BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780882|ref|YP_003065295.1| site-specific tyrosine
recombinase XerC [Candidatus Liberibacter asiaticus str. psy62]
         (328 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780882|ref|YP_003065295.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040559|gb|ACT57355.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 328

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/328 (100%), Positives = 328/328 (100%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI
Sbjct: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK
Sbjct: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN
Sbjct: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP
Sbjct: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN
Sbjct: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           VNSKNGGDWMMEIYDQTHPSITQKDKKN
Sbjct: 301 VNSKNGGDWMMEIYDQTHPSITQKDKKN 328


>gi|315122698|ref|YP_004063187.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496100|gb|ADR52699.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 324

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/327 (71%), Positives = 279/327 (85%), Gaps = 7/327 (2%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ME  NL EIV+ ELL+ERQNWL +L++E GLSKLTLQSYE D RQFL F+AFYT EKI +
Sbjct: 1   MERKNLHEIVTTELLEERQNWLNSLKVEHGLSKLTLQSYERDMRQFLTFMAFYTGEKIDL 60

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           Q +RQL YT+IRAF+SKRR   I +RSL RSLSGI+SFLKYLKKR+IT E+NILNM+NLK
Sbjct: 61  QAMRQLLYTDIRAFVSKRRLHGIENRSLTRSLSGIRSFLKYLKKRQITGEANILNMKNLK 120

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           KSNSLP+ L+EKQAL L+ N  ++T ++TKWI+ARNSAILYLLYGCGLRISE LSLTPQN
Sbjct: 121 KSNSLPKPLSEKQALNLI-NYDINTHNDTKWINARNSAILYLLYGCGLRISETLSLTPQN 179

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I+DD+S+LRI GKG+K RIVPLL SVR+ I++YY LCPFD  L+I+LPLFRG RGKPLNP
Sbjct: 180 IIDDESSLRITGKGNKTRIVPLLSSVREIIMKYYTLCPFD--LHIELPLFRGARGKPLNP 237

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           GVFQRYIR LR+ L LP +TT HTLRHSFATH+LSNGGDLRSIQS+LGH RLS+TQ+YTN
Sbjct: 238 GVFQRYIRYLRQNLSLPTTTTPHTLRHSFATHILSNGGDLRSIQSVLGHARLSSTQVYTN 297

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKDKK 327
           V+SK     ++EIYDQ+HP +T  +KK
Sbjct: 298 VDSKR----IIEIYDQSHPIVTNNNKK 320


>gi|222150032|ref|YP_002550989.1| site-specific tyrosine recombinase XerC [Agrobacterium vitis S4]
 gi|221737014|gb|ACM37977.1| site-specific tyrosine recombinase XerC [Agrobacterium vitis S4]
          Length = 322

 Score =  302 bits (773), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 156/321 (48%), Positives = 213/321 (66%), Gaps = 11/321 (3%)

Query: 2   EGNNLPE---IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI 58
           EG  + E   I + +L+ ERQNWL +L  +R L+  TL +YE DTRQFL FL  Y     
Sbjct: 8   EGPAVTELLLIAAPDLMAERQNWLASLSGQRRLADHTLTAYERDTRQFLGFLTGYFGGPP 67

Query: 59  TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
           +I  I+ L  +++RAF+S RR +  G RSL R L+G++S L+YL+++ +   +    +R+
Sbjct: 68  SIDDIKALRPSDLRAFLSSRRKEGAGARSLGRHLAGVRSLLRYLERKGLVNAAGAGAIRS 127

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            K+  SLP+ L+  QALT+V        +E  WI AR++A+  LLYGCGLRISEAL LTP
Sbjct: 128 PKQPKSLPKPLSAAQALTVVAAET--QLNEEPWIAARDAAVFALLYGCGLRISEALDLTP 185

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
            +I+   +TLR+ GKG+K R+VPLLP VR+A+  Y  LCP+  +L    PLFRG RG  L
Sbjct: 186 ADIVATTTTLRVTGKGNKTRLVPLLPIVRQAVESYQSLCPY--HLPATEPLFRGARGGKL 243

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             G+ QR +++LR  LGLP + T H LRHSFATHLLS GGDLR+IQ +LGH  LSTTQIY
Sbjct: 244 QQGIIQREMQRLRSALGLPDTATPHALRHSFATHLLSGGGDLRTIQELLGHASLSTTQIY 303

Query: 299 TNVNSKNGGDWMMEIYDQTHP 319
           T V+S      ++++YD+ HP
Sbjct: 304 TGVDSAR----LLDVYDRAHP 320


>gi|190893726|ref|YP_001980268.1| tyrosine site-specific integrase/recombinase [Rhizobium etli CIAT
           652]
 gi|190699005|gb|ACE93090.1| tyrosine site-specific integrase/recombinase protein [Rhizobium
           etli CIAT 652]
          Length = 311

 Score =  301 bits (772), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 150/316 (47%), Positives = 209/316 (66%), Gaps = 8/316 (2%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N L  I    L+ ER  WL+NL  ER LS+ TL +YE DTRQFL FL  +    +T+  I
Sbjct: 2   NELLVIADPRLMAERAAWLENLARERRLSEHTLDAYERDTRQFLTFLTGHLAGPVTLSDI 61

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           R+L   + RAF++ RR Q  G RSL R+L+G++S L++L+K+ +   +    +R+ K+  
Sbjct: 62  RELRPADFRAFLAARRKQGSGARSLGRNLAGLRSLLRHLEKKGLVNAAGAAAIRSPKQPK 121

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           SLP+ L++ QA+T+V N      H+  WI AR++A++ LLYGCGLRISEAL L P ++  
Sbjct: 122 SLPKPLSDTQAITVVSNEA--QLHDEPWIAARDAAVMTLLYGCGLRISEALDLVPADLPK 179

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
             +TLRI GKG+K R+VPLLP V +A+ +Y  LCP+  +L    PLFRG RG  L   + 
Sbjct: 180 GATTLRITGKGNKTRLVPLLPVVFEAVEKYRALCPY--HLENDAPLFRGARGGKLQAAII 237

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           QR +++LR   GLP + T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ+YT V++
Sbjct: 238 QRAMQKLRSAFGLPETATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDA 297

Query: 304 KNGGDWMMEIYDQTHP 319
                 ++E+YD+ HP
Sbjct: 298 SR----LLEVYDRAHP 309


>gi|86359460|ref|YP_471352.1| site-specific tyrosine recombinase XerC [Rhizobium etli CFN 42]
 gi|86283562|gb|ABC92625.1| tyrosine site-specific integrase/recombinase protein [Rhizobium
           etli CFN 42]
          Length = 311

 Score =  301 bits (771), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 153/317 (48%), Positives = 211/317 (66%), Gaps = 10/317 (3%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N L  I    L+ ER  WL+NL  ER LS+ TL +YE DTRQFL FL  +     T+  I
Sbjct: 2   NELLVIADPRLMAERAAWLENLARERRLSEHTLDAYERDTRQFLTFLTGHLAGPATLGDI 61

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           R+L   ++RAF++ RR Q  G RSL R+L+G++S L++L+K+ +   +    +R+ K+  
Sbjct: 62  RELRPADLRAFLAARRRQGSGARSLGRNLAGLRSLLRHLEKKGLVNAAGAGAIRSPKQPK 121

Query: 124 SLPRALNEKQALTLV-DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           SLP+ L++ QA+T+V D   L   H+  WI AR++A++ LLYGCGLRISEAL+L P ++ 
Sbjct: 122 SLPKPLSDTQAITIVSDEAQL---HDEPWIAARDAAVMTLLYGCGLRISEALNLVPADLP 178

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
              +TLRI GKG+K R+VPLLP V  A+ +Y  LCP+DL      PLFRG RG  L   +
Sbjct: 179 KGATTLRITGKGNKTRLVPLLPVVFDAVEKYRALCPYDLESGE--PLFRGARGGKLQAAI 236

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            QR +++LR  LGLP + T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ+YT V+
Sbjct: 237 IQRAMQKLRGALGLPETATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVD 296

Query: 303 SKNGGDWMMEIYDQTHP 319
           +      ++E+YD+ HP
Sbjct: 297 ASR----LLEVYDRAHP 309


>gi|241206644|ref|YP_002977740.1| site-specific tyrosine recombinase XerC [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240860534|gb|ACS58201.1| integrase family protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 311

 Score =  298 bits (764), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 149/317 (47%), Positives = 210/317 (66%), Gaps = 10/317 (3%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N L  I    L+ ER  WL+NL  ER LS+ TL +YE DTRQFL FL  +    +T+  I
Sbjct: 2   NELLVIADPRLMTERAAWLENLASERRLSEHTLDAYERDTRQFLTFLTGHLAGPVTLGDI 61

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           R+L   + RAF++ RR Q  G RSL R+L+G++S L++L+K+ +   +    +R+ K+  
Sbjct: 62  RELRSADFRAFLAARRKQGSGARSLGRNLAGLRSLLRHLEKKGLVNAAGAAAVRSPKQPK 121

Query: 124 SLPRALNEKQALTLV-DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           SLP+ L++ QA+T+V D+  L   H+  WI AR++A++ LLYGCGLRISEAL LTP ++ 
Sbjct: 122 SLPKPLSDTQAITVVSDDAQL---HDEPWIAARDAAVMTLLYGCGLRISEALDLTPADLQ 178

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
              +TLRI GKG+K R+VPLL  +  A+ +Y  LCP+  +L    PLFRG RG  L   +
Sbjct: 179 KGATTLRITGKGNKTRLVPLLSVIFDAVEKYRTLCPY--HLEAGEPLFRGARGGKLQAAI 236

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            QR ++++R   GLP + T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ+YT V+
Sbjct: 237 IQRTMQKMRSAFGLPETATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVD 296

Query: 303 SKNGGDWMMEIYDQTHP 319
           +      ++E+YD+ HP
Sbjct: 297 ASR----LLEVYDRAHP 309


>gi|209551233|ref|YP_002283150.1| site-specific tyrosine recombinase XerC [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209536989|gb|ACI56924.1| tyrosine recombinase XerC [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 311

 Score =  298 bits (763), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 151/316 (47%), Positives = 206/316 (65%), Gaps = 8/316 (2%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N L  I    L+ ER  WL+NL  ER LS+ TL +YE DTRQFL FL  +     T+  I
Sbjct: 2   NELLVIADPRLMAERAAWLENLARERRLSEHTLDAYERDTRQFLTFLTGHLAGPATLGDI 61

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           R+L   + RAF++ RR Q  G RSL R+L+G++S L+YL+K+ +   +    +R+ K+  
Sbjct: 62  RELRPADFRAFLAARRKQGSGARSLGRNLAGLRSLLRYLEKKGLVNAAGAGAIRSPKQPK 121

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           SLP+ L++ QA+T+V N      H+  WI AR++A++ LLYGCGLRISEAL L P ++  
Sbjct: 122 SLPKPLSDTQAITVVSNEA--QLHDEPWIAARDAAVMTLLYGCGLRISEALDLIPSDLKK 179

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
             +TLRI GKG+K R+VPLL  V  A+ +Y  LCP+DL      PLFRG RG  L   + 
Sbjct: 180 GATTLRITGKGNKTRLVPLLSVVFDAVEKYRTLCPYDLEPGE--PLFRGARGGKLQAAII 237

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           QR +++LR   GLP + T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ+YT V++
Sbjct: 238 QRAMQKLRSAFGLPETATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDA 297

Query: 304 KNGGDWMMEIYDQTHP 319
                 ++E+YD+ HP
Sbjct: 298 SR----LLEVYDRAHP 309


>gi|222087447|ref|YP_002545984.1| tyrosine recombinase XerC [Agrobacterium radiobacter K84]
 gi|221724895|gb|ACM28051.1| tyrosine recombinase XerC [Agrobacterium radiobacter K84]
          Length = 311

 Score =  298 bits (763), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 152/317 (47%), Positives = 207/317 (65%), Gaps = 10/317 (3%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N L  I   +L+ ER  WL+ L  ER LS  TL +YE DTRQFL FL  +     +I  I
Sbjct: 2   NELLIIADPKLMDERSRWLEVLGQERRLSAHTLDAYERDTRQFLTFLTGHLGGPASINDI 61

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           + L   + R F++ RR    G RSL R+L+G++S L+YL+K+ +   +    +R+ K+  
Sbjct: 62  QALRPADFRGFLAARRKDGAGARSLGRNLAGLRSLLRYLEKKGLVNAAGAGAVRSPKQPK 121

Query: 124 SLPRALNEKQALTLV-DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           SLP+ L++ QA+T+V D   LH   E  WI AR++A+L LLYGCGLRISEAL LTP +I 
Sbjct: 122 SLPKPLSDTQAITVVSDEAQLH---EEPWIAARDAAVLTLLYGCGLRISEALDLTPDDIR 178

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
              + LRI GKG+K R+VPLLP V +A+  Y  +CP+  +L+   PLFRG RG  L+PG+
Sbjct: 179 PGATALRITGKGNKTRLVPLLPVVAEAVERYRAICPY--HLDAGSPLFRGARGGKLHPGI 236

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            QR +++LR   GLP + T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ+YT V+
Sbjct: 237 IQRGMQKLRSAFGLPDTATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVD 296

Query: 303 SKNGGDWMMEIYDQTHP 319
                  ++E+YD+ HP
Sbjct: 297 QSR----LLEVYDRAHP 309


>gi|325293997|ref|YP_004279861.1| site-specific tyrosine recombinase XerC [Agrobacterium sp. H13-3]
 gi|325061850|gb|ADY65541.1| site-specific tyrosine recombinase XerC [Agrobacterium sp. H13-3]
          Length = 311

 Score =  295 bits (754), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 151/315 (47%), Positives = 204/315 (64%), Gaps = 11/315 (3%)

Query: 8   EIVSF---ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           EI++F   +LL ERQ+WL  +  ER L+  T+++YE DTRQFL FL  Y  +  +I  I 
Sbjct: 3   EILTFATPDLLNERQSWLAAIAGERRLADNTVEAYERDTRQFLTFLTGYIGKPASIADIA 62

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            L   ++RAF++ RR +  G RSL R L+G++SFL YL+K+++   +    MR+ K+  S
Sbjct: 63  DLRPVDLRAFLASRRKEGAGARSLGRHLAGLRSFLHYLQKKRLVNAAGATAMRSPKQPKS 122

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP+ L ++QAL +         +E  WI ARN+A+L LLYGCGLRISEAL L P +   D
Sbjct: 123 LPKPLTDRQALKITTTEA--QLNEEPWIAARNAAVLSLLYGCGLRISEALGLAPADFTPD 180

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
             +LRI GKG+K R+VPLL  V +A+  Y  LCP+  +L    PLF G RG  L P + Q
Sbjct: 181 ARSLRITGKGNKTRMVPLLAVVTEAVEAYKKLCPY--HLAADQPLFLGARGGKLQPAIIQ 238

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R +++LR   GLP + T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQIYT V++ 
Sbjct: 239 REMQKLRGAFGLPENATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQIYTGVDTA 298

Query: 305 NGGDWMMEIYDQTHP 319
                ++EIYD  HP
Sbjct: 299 R----LLEIYDNAHP 309


>gi|116254158|ref|YP_769996.1| site-specific tyrosine recombinase XerC [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115258806|emb|CAK09912.1| putative tyrosine recombinase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 299

 Score =  293 bits (750), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 146/306 (47%), Positives = 205/306 (66%), Gaps = 10/306 (3%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           + ER  WL+NL  ER LS+ TL +YE DTRQFL FL  +     T++ IR+L   + RAF
Sbjct: 1   MAERAAWLENLARERRLSEHTLDAYERDTRQFLTFLTGHLAGPATLRDIRELRPADFRAF 60

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++ RR Q  G RSL R+L+G++S L++L+K+ +   +    +R+ K+  SLP+ L++ QA
Sbjct: 61  LAARRKQGSGARSLGRNLAGLRSLLRHLEKKGLVNAAGAAAVRSPKQPKSLPKPLSDTQA 120

Query: 135 LTLV-DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           +T+V D   L   H+  WI AR++A++ LLYGCGLRISEAL LTP ++    +TLRI GK
Sbjct: 121 ITVVSDEAQL---HDEPWIAARDAAVMTLLYGCGLRISEALDLTPADLQKGATTLRITGK 177

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R+VPLL  V  A+ +Y  LCP+  +L    PLFRG RG  L   + QR ++++R  
Sbjct: 178 GNKTRLVPLLSVVFDAVEKYRALCPY--HLESGEPLFRGARGGKLQAAIIQRTMQKMRSA 235

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GLP + T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ+YT V++      ++E+
Sbjct: 236 FGLPETATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASR----LLEV 291

Query: 314 YDQTHP 319
           YD+ HP
Sbjct: 292 YDRAHP 297


>gi|150398130|ref|YP_001328597.1| site-specific tyrosine recombinase XerC [Sinorhizobium medicae
           WSM419]
 gi|150029645|gb|ABR61762.1| phage integrase family protein [Sinorhizobium medicae WSM419]
          Length = 313

 Score =  286 bits (732), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 147/318 (46%), Positives = 204/318 (64%), Gaps = 12/318 (3%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N L  I   E++ ER+ WL +L  ER LS  T+++YE DTRQFL FL  +      +  I
Sbjct: 4   NELLIIGHPEVMAERKRWLASLAEERRLSGKTVEAYERDTRQFLTFLTGHLAGPPRLSDI 63

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           R L   ++R F+++RR    G R+L R L+G++SFL+YL+K  +   +    +R+ K+  
Sbjct: 64  RALRPADLRGFLAQRRKGGAGARTLGRGLAGLRSFLRYLEKNGLANAAGAGAVRSPKQPK 123

Query: 124 SLPRALNEKQALTLV--DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           SLP+ L ++ AL +V  D+ L     E  WI ARN+A+L LLYGCGLRI+EAL LTP + 
Sbjct: 124 SLPKPLTDRDALKVVTTDSQLA----EEPWIAARNAAVLTLLYGCGLRIAEALDLTPADF 179

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
            +   +LR+ GKG K RIVPL+ +  +A+  Y  LCP+  ++    P+FRG RG  L P 
Sbjct: 180 TETARSLRVTGKGGKTRIVPLIAAAAEAVTTYRKLCPY--HIEAGEPIFRGARGAKLQPA 237

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + QR +++LR  LGLP S T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ+YT V
Sbjct: 238 IIQREMQKLRSALGLPDSATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGV 297

Query: 302 NSKNGGDWMMEIYDQTHP 319
           +S      ++EIYD+ HP
Sbjct: 298 DSAR----LLEIYDRAHP 311


>gi|15889883|ref|NP_355564.1| site-specific tyrosine recombinase XerC [Agrobacterium tumefaciens
           str. C58]
 gi|34222928|sp|Q8UC70|XERC_AGRT5 RecName: Full=Tyrosine recombinase xerC
 gi|15157830|gb|AAK88349.1| site-specific recombinase [Agrobacterium tumefaciens str. C58]
          Length = 315

 Score =  285 bits (730), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 151/317 (47%), Positives = 202/317 (63%), Gaps = 15/317 (4%)

Query: 8   EIVSF---ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           EI++F   +LL ERQ+WL  L  ER L+  T+++YE DTRQFL FL  Y      I+ I 
Sbjct: 7   EILTFAEPDLLNERQSWLATLAGERRLADNTVEAYERDTRQFLRFLTGYIGRPAAIRDIA 66

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            L   ++RAF++ RR +  G RSL R L+G++S L +L+K+ +   +    MR  K+  S
Sbjct: 67  DLRPVDLRAFLANRRKEGAGARSLGRHLAGLRSLLHHLQKKGLVNAAGATAMRAPKQPKS 126

Query: 125 LPRALNEKQAL--TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           LP+ L ++QAL  T  +  L    +E  WI ARN+A+L LLYGCGLRISEAL LTP +  
Sbjct: 127 LPKPLTDRQALKITTAEAQL----NEEPWIAARNAAVLSLLYGCGLRISEALGLTPADFP 182

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
               +LRI GKG+K RIVPLL  V +A+  Y  LCP+ L  +   P+F G RG  L P +
Sbjct: 183 PGTRSLRITGKGNKTRIVPLLAVVTEAVDTYRKLCPYALAADE--PMFLGARGGKLQPAI 240

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            QR +++LR   GLP + T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ+YT V+
Sbjct: 241 IQREMQKLRGAFGLPENATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVD 300

Query: 303 SKNGGDWMMEIYDQTHP 319
           +      ++EIYD  HP
Sbjct: 301 TAR----LLEIYDNAHP 313


>gi|34222987|sp|Q92LK1|XERC_RHIME RecName: Full=Tyrosine recombinase xerC
          Length = 318

 Score =  284 bits (726), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 145/318 (45%), Positives = 205/318 (64%), Gaps = 12/318 (3%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N L  I   E++ ER+ WL +L  ER LS+ T+ +YE DTRQFL FL  +      +  I
Sbjct: 9   NELLAIGHPEVMAERRRWLASLAEERRLSEKTVDAYERDTRQFLTFLTGHLAGPPRLSDI 68

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
             L   ++R F+++RR    G R+L R L+G++SFL+YL++  +   +    +R+ K+  
Sbjct: 69  CALRPADLRGFLAQRRKGGAGARTLGRGLAGLRSFLRYLERNGLANAAGAGAVRSPKQPK 128

Query: 124 SLPRALNEKQALTLV--DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           SLP+AL +++AL +V  D  L     E  WI ARN+A+L LLYGCGLRI+EAL LTP + 
Sbjct: 129 SLPKALTDREALKVVTADAQLA----EEPWIAARNAAVLTLLYGCGLRIAEALDLTPADF 184

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
               ++LR+ GKG K RIVP++ +  +A+  Y  LCP+  ++  + P+FRG RG  L P 
Sbjct: 185 SGPVTSLRVTGKGGKTRIVPMIAAAAEAVETYRKLCPY--HIEPEEPIFRGARGAKLQPA 242

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + QR +++LR  LGLP S T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ+YT V
Sbjct: 243 IIQREMQKLRAALGLPDSATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGV 302

Query: 302 NSKNGGDWMMEIYDQTHP 319
           +S      ++EIYD+ HP
Sbjct: 303 DSAR----LLEIYDRAHP 316


>gi|227823634|ref|YP_002827607.1| site-specific tyrosine recombinase XerC [Sinorhizobium fredii
           NGR234]
 gi|227342636|gb|ACP26854.1| tyrosine recombinase XerC [Sinorhizobium fredii NGR234]
          Length = 310

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 149/318 (46%), Positives = 202/318 (63%), Gaps = 13/318 (4%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N L  I   E++ ER  WL +L  ER LS+ T+++YE DTRQFL FL  +      +  I
Sbjct: 2   NELLVIGHPEVMAERHRWLASLAEERRLSEKTIEAYERDTRQFLTFLTGHLAGPPRLADI 61

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           R L   ++R F+++RR    G R+L R L+G++SFL+YL+K  +   +    +R+ K+  
Sbjct: 62  RTLRPADLRGFLAQRRKAGAGARTLGRGLAGLRSFLRYLEKHGLANAAGAGAVRSPKQPK 121

Query: 124 SLPRALNEKQALTLV--DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           SLP+ L ++ AL +V  D  L     E  WI ARN+A+L LLYGCGLRISEAL LTP + 
Sbjct: 122 SLPKPLTDRDALEVVTADAQLA----EEPWIAARNAAVLTLLYGCGLRISEALDLTPDD- 176

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
               ++LRI GKG K RIVPL+ +   A+  Y  LCP+  ++    P+FRG RG  L P 
Sbjct: 177 FSGAASLRITGKGGKTRIVPLIAAATGAVATYRKLCPY--HIGPGEPIFRGARGAKLQPA 234

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + QR +++LR  LGLP S T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ+YT V
Sbjct: 235 IIQREMQKLRSALGLPDSATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGV 294

Query: 302 NSKNGGDWMMEIYDQTHP 319
           +S      ++EIYD+ HP
Sbjct: 295 DSAR----LLEIYDRAHP 308


>gi|15966799|ref|NP_387152.1| site-specific tyrosine recombinase XerC [Sinorhizobium meliloti
           1021]
 gi|307301627|ref|ZP_07581386.1| integrase family protein [Sinorhizobium meliloti BL225C]
 gi|15076071|emb|CAC47625.1| Probable integrase/recombinase [Sinorhizobium meliloti 1021]
 gi|306903325|gb|EFN33914.1| integrase family protein [Sinorhizobium meliloti BL225C]
          Length = 330

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 145/318 (45%), Positives = 205/318 (64%), Gaps = 12/318 (3%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N L  I   E++ ER+ WL +L  ER LS+ T+ +YE DTRQFL FL  +      +  I
Sbjct: 21  NELLAIGHPEVMAERRRWLASLAEERRLSEKTVDAYERDTRQFLTFLTGHLAGPPRLSDI 80

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
             L   ++R F+++RR    G R+L R L+G++SFL+YL++  +   +    +R+ K+  
Sbjct: 81  CALRPADLRGFLAQRRKGGAGARTLGRGLAGLRSFLRYLERNGLANAAGAGAVRSPKQPK 140

Query: 124 SLPRALNEKQALTLV--DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           SLP+AL +++AL +V  D  L     E  WI ARN+A+L LLYGCGLRI+EAL LTP + 
Sbjct: 141 SLPKALTDREALKVVTADAQLA----EEPWIAARNAAVLTLLYGCGLRIAEALDLTPADF 196

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
               ++LR+ GKG K RIVP++ +  +A+  Y  LCP+  ++  + P+FRG RG  L P 
Sbjct: 197 SGPVTSLRVTGKGGKTRIVPMIAAAAEAVETYRKLCPY--HIEPEEPIFRGARGAKLQPA 254

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + QR +++LR  LGLP S T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ+YT V
Sbjct: 255 IIQREMQKLRAALGLPDSATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGV 314

Query: 302 NSKNGGDWMMEIYDQTHP 319
           +S      ++EIYD+ HP
Sbjct: 315 DSAR----LLEIYDRAHP 328


>gi|163843939|ref|YP_001628343.1| site-specific tyrosine recombinase XerC [Brucella suis ATCC 23445]
 gi|163674662|gb|ABY38773.1| tyrosine recombinase XerC [Brucella suis ATCC 23445]
          Length = 315

 Score =  282 bits (722), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 145/310 (46%), Positives = 201/310 (64%), Gaps = 13/310 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L   R+ WL++L+  R LS  TL +YE DTRQFL FL  +  E  +++ I  L   ++R
Sbjct: 14  DLAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLR 73

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +F++ RR    G R+L R L+G++S L++L+KR +   +    MR  ++  SLP+ L   
Sbjct: 74  SFLANRRNDGAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTAD 133

Query: 133 QALTLV--DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLR 189
            A  LV  D  +     E  WI ARN+A+L LLYGCGLRISEAL L+   + D  + ++ 
Sbjct: 134 DARRLVSADGQMA----EEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMT 189

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           I GKG K R+VPLLP+V KA+ +Y  LCPFDL+     PLFRG +G PL+  + QR +++
Sbjct: 190 ITGKGSKTRLVPLLPAVHKAVAQYRALCPFDLSAG--QPLFRGAKGGPLHAAIIQREMQK 247

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           LR  LGLP S T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ+YT V+++     
Sbjct: 248 LRAGLGLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQR---- 303

Query: 310 MMEIYDQTHP 319
           ++E+YD+THP
Sbjct: 304 LLEVYDKTHP 313


>gi|23502766|ref|NP_698893.1| site-specific tyrosine recombinase XerC [Brucella suis 1330]
 gi|62290770|ref|YP_222563.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 1
           str. 9-941]
 gi|82700682|ref|YP_415256.1| site-specific tyrosine recombinase XerC [Brucella melitensis biovar
           Abortus 2308]
 gi|161619834|ref|YP_001593721.1| site-specific tyrosine recombinase XerC [Brucella canis ATCC 23365]
 gi|189024985|ref|YP_001935753.1| site-specific tyrosine recombinase XerC [Brucella abortus S19]
 gi|225853354|ref|YP_002733587.1| site-specific tyrosine recombinase XerC [Brucella melitensis ATCC
           23457]
 gi|254690060|ref|ZP_05153314.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 6
           str. 870]
 gi|254694548|ref|ZP_05156376.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 3
           str. Tulya]
 gi|254696173|ref|ZP_05158001.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254700560|ref|ZP_05162388.1| site-specific tyrosine recombinase XerC [Brucella suis bv. 5 str.
           513]
 gi|254704930|ref|ZP_05166758.1| site-specific tyrosine recombinase XerC [Brucella suis bv. 3 str.
           686]
 gi|254707556|ref|ZP_05169384.1| site-specific tyrosine recombinase XerC [Brucella pinnipedialis
           M163/99/10]
 gi|254708907|ref|ZP_05170718.1| site-specific tyrosine recombinase XerC [Brucella pinnipedialis
           B2/94]
 gi|254715980|ref|ZP_05177791.1| site-specific tyrosine recombinase XerC [Brucella ceti M13/05/1]
 gi|254731091|ref|ZP_05189669.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 4
           str. 292]
 gi|256030433|ref|ZP_05444047.1| site-specific tyrosine recombinase XerC [Brucella pinnipedialis
           M292/94/1]
 gi|256112250|ref|ZP_05453171.1| site-specific tyrosine recombinase XerC [Brucella melitensis bv. 3
           str. Ether]
 gi|256158417|ref|ZP_05456315.1| site-specific tyrosine recombinase XerC [Brucella ceti M490/95/1]
 gi|256253837|ref|ZP_05459373.1| site-specific tyrosine recombinase XerC [Brucella ceti B1/94]
 gi|256258313|ref|ZP_05463849.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 9
           str. C68]
 gi|256263161|ref|ZP_05465693.1| tyrosine recombinase xerC [Brucella melitensis bv. 2 str. 63/9]
 gi|256370318|ref|YP_003107829.1| tyrosine recombinase [Brucella microti CCM 4915]
 gi|260169343|ref|ZP_05756154.1| site-specific tyrosine recombinase XerC [Brucella sp. F5/99]
 gi|260546037|ref|ZP_05821777.1| tyrosine recombinase xerC [Brucella abortus NCTC 8038]
 gi|260567595|ref|ZP_05838065.1| tyrosine recombinase xerC [Brucella suis bv. 4 str. 40]
 gi|260755595|ref|ZP_05867943.1| tyrosine recombinase xerC [Brucella abortus bv. 6 str. 870]
 gi|260758821|ref|ZP_05871169.1| tyrosine recombinase xerC [Brucella abortus bv. 4 str. 292]
 gi|260760545|ref|ZP_05872888.1| tyrosine recombinase xerC [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884621|ref|ZP_05896235.1| tyrosine recombinase xerC [Brucella abortus bv. 9 str. C68]
 gi|261214868|ref|ZP_05929149.1| tyrosine recombinase xerC [Brucella abortus bv. 3 str. Tulya]
 gi|261217745|ref|ZP_05932026.1| tyrosine recombinase xerC [Brucella ceti M13/05/1]
 gi|261220972|ref|ZP_05935253.1| tyrosine recombinase xerC [Brucella ceti B1/94]
 gi|261315040|ref|ZP_05954237.1| tyrosine recombinase xerC [Brucella pinnipedialis M163/99/10]
 gi|261316403|ref|ZP_05955600.1| tyrosine recombinase xerC [Brucella pinnipedialis B2/94]
 gi|261751064|ref|ZP_05994773.1| tyrosine recombinase xerC [Brucella suis bv. 5 str. 513]
 gi|261755626|ref|ZP_05999335.1| tyrosine recombinase xerC [Brucella suis bv. 3 str. 686]
 gi|261758859|ref|ZP_06002568.1| tyrosine recombinase xerC [Brucella sp. F5/99]
 gi|265987475|ref|ZP_06100032.1| tyrosine recombinase xerC [Brucella pinnipedialis M292/94/1]
 gi|265993679|ref|ZP_06106236.1| tyrosine recombinase xerC [Brucella melitensis bv. 3 str. Ether]
 gi|265996931|ref|ZP_06109488.1| tyrosine recombinase xerC [Brucella ceti M490/95/1]
 gi|294851157|ref|ZP_06791830.1| tyrosine recombinase XerC [Brucella sp. NVSL 07-0026]
 gi|297247158|ref|ZP_06930876.1| tyrosine recombinase XerC [Brucella abortus bv. 5 str. B3196]
 gi|306843367|ref|ZP_07475968.1| tyrosine recombinase XerC [Brucella sp. BO1]
 gi|34222806|sp|Q7ZAN7|XERC_BRUSU RecName: Full=Tyrosine recombinase xerC
 gi|23348785|gb|AAN30808.1| integrase/recombinase XerC [Brucella suis 1330]
 gi|62196902|gb|AAX75202.1| XerC, integrase/recombinase [Brucella abortus bv. 1 str. 9-941]
 gi|82616783|emb|CAJ11872.1| Phage integrase:Phage integrase, N-terminal SAM-like [Brucella
           melitensis biovar Abortus 2308]
 gi|161336645|gb|ABX62950.1| tyrosine recombinase XerC [Brucella canis ATCC 23365]
 gi|189020557|gb|ACD73279.1| Phage integrase [Brucella abortus S19]
 gi|225641719|gb|ACO01633.1| tyrosine recombinase XerC [Brucella melitensis ATCC 23457]
 gi|256000481|gb|ACU48880.1| tyrosine recombinase [Brucella microti CCM 4915]
 gi|260096144|gb|EEW80020.1| tyrosine recombinase xerC [Brucella abortus NCTC 8038]
 gi|260157113|gb|EEW92193.1| tyrosine recombinase xerC [Brucella suis bv. 4 str. 40]
 gi|260669139|gb|EEX56079.1| tyrosine recombinase xerC [Brucella abortus bv. 4 str. 292]
 gi|260670977|gb|EEX57798.1| tyrosine recombinase xerC [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675703|gb|EEX62524.1| tyrosine recombinase xerC [Brucella abortus bv. 6 str. 870]
 gi|260874149|gb|EEX81218.1| tyrosine recombinase xerC [Brucella abortus bv. 9 str. C68]
 gi|260916475|gb|EEX83336.1| tyrosine recombinase xerC [Brucella abortus bv. 3 str. Tulya]
 gi|260919556|gb|EEX86209.1| tyrosine recombinase xerC [Brucella ceti B1/94]
 gi|260922834|gb|EEX89402.1| tyrosine recombinase xerC [Brucella ceti M13/05/1]
 gi|261295626|gb|EEX99122.1| tyrosine recombinase xerC [Brucella pinnipedialis B2/94]
 gi|261304066|gb|EEY07563.1| tyrosine recombinase xerC [Brucella pinnipedialis M163/99/10]
 gi|261738843|gb|EEY26839.1| tyrosine recombinase xerC [Brucella sp. F5/99]
 gi|261740817|gb|EEY28743.1| tyrosine recombinase xerC [Brucella suis bv. 5 str. 513]
 gi|261745379|gb|EEY33305.1| tyrosine recombinase xerC [Brucella suis bv. 3 str. 686]
 gi|262551399|gb|EEZ07389.1| tyrosine recombinase xerC [Brucella ceti M490/95/1]
 gi|262764660|gb|EEZ10581.1| tyrosine recombinase xerC [Brucella melitensis bv. 3 str. Ether]
 gi|263093066|gb|EEZ17216.1| tyrosine recombinase xerC [Brucella melitensis bv. 2 str. 63/9]
 gi|264659672|gb|EEZ29933.1| tyrosine recombinase xerC [Brucella pinnipedialis M292/94/1]
 gi|294819746|gb|EFG36745.1| tyrosine recombinase XerC [Brucella sp. NVSL 07-0026]
 gi|297174327|gb|EFH33674.1| tyrosine recombinase XerC [Brucella abortus bv. 5 str. B3196]
 gi|306276058|gb|EFM57758.1| tyrosine recombinase XerC [Brucella sp. BO1]
 gi|326409918|gb|ADZ66983.1| Phage integrase [Brucella melitensis M28]
 gi|326539631|gb|ADZ87846.1| tyrosine recombinase XerC [Brucella melitensis M5-90]
          Length = 315

 Score =  281 bits (719), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 144/310 (46%), Positives = 201/310 (64%), Gaps = 13/310 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L   R+ WL++L+  R LS  TL +YE DTRQFL FL  +  E  +++ I  L   ++R
Sbjct: 14  DLAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLR 73

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +F++ RR    G R+L R L+G++S L++L+KR +   +    MR  ++  SLP+ L   
Sbjct: 74  SFLANRRNDGAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTAD 133

Query: 133 QALTLV--DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLR 189
            A  +V  D  +     E  WI ARN+A+L LLYGCGLRISEAL L+   + D  + ++ 
Sbjct: 134 DARRVVSADGQMA----EEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMT 189

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           I GKG K R+VPLLP+V KA+ +Y  LCPFDL+     PLFRG +G PL+  + QR +++
Sbjct: 190 ITGKGSKTRLVPLLPAVHKAVAQYRALCPFDLSAG--QPLFRGAKGGPLHAAIIQREMQK 247

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           LR  LGLP S T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ+YT V+++     
Sbjct: 248 LRAGLGLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQR---- 303

Query: 310 MMEIYDQTHP 319
           ++E+YD+THP
Sbjct: 304 LLEVYDKTHP 313


>gi|225628115|ref|ZP_03786150.1| tyrosine recombinase XerC [Brucella ceti str. Cudo]
 gi|237816277|ref|ZP_04595270.1| tyrosine recombinase XerC [Brucella abortus str. 2308 A]
 gi|225616940|gb|EEH13987.1| tyrosine recombinase XerC [Brucella ceti str. Cudo]
 gi|237788344|gb|EEP62559.1| tyrosine recombinase XerC [Brucella abortus str. 2308 A]
          Length = 317

 Score =  281 bits (719), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 144/310 (46%), Positives = 201/310 (64%), Gaps = 13/310 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L   R+ WL++L+  R LS  TL +YE DTRQFL FL  +  E  +++ I  L   ++R
Sbjct: 16  DLAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLR 75

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +F++ RR    G R+L R L+G++S L++L+KR +   +    MR  ++  SLP+ L   
Sbjct: 76  SFLANRRNDGAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTAD 135

Query: 133 QALTLV--DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLR 189
            A  +V  D  +     E  WI ARN+A+L LLYGCGLRISEAL L+   + D  + ++ 
Sbjct: 136 DARRVVSADGQMA----EEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMT 191

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           I GKG K R+VPLLP+V KA+ +Y  LCPFDL+     PLFRG +G PL+  + QR +++
Sbjct: 192 ITGKGSKTRLVPLLPAVHKAVAQYRALCPFDLSAG--QPLFRGAKGGPLHAAIIQREMQK 249

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           LR  LGLP S T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ+YT V+++     
Sbjct: 250 LRAGLGLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQR---- 305

Query: 310 MMEIYDQTHP 319
           ++E+YD+THP
Sbjct: 306 LLEVYDKTHP 315


>gi|307316349|ref|ZP_07595793.1| integrase family protein [Sinorhizobium meliloti AK83]
 gi|306898189|gb|EFN28931.1| integrase family protein [Sinorhizobium meliloti AK83]
          Length = 330

 Score =  281 bits (719), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 144/318 (45%), Positives = 204/318 (64%), Gaps = 12/318 (3%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N L  I   E++ ER+ WL +L  ER LS+ T+ +YE DTRQFL FL  +      +  I
Sbjct: 21  NELLAIGHPEVMAERRRWLASLAEERRLSEKTVDAYERDTRQFLTFLTGHLAGPPRLSDI 80

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
             L   ++R F+++RR    G R+L R L+G++SFL+YL++  +   +    +R+ K+  
Sbjct: 81  CALRPADLRGFLAQRRKGGAGARTLGRGLAGLRSFLRYLERNGLANAAGAGAVRSPKQPK 140

Query: 124 SLPRALNEKQALTLV--DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           SLP+AL +++AL +V  D  L     E  WI ARN+A+L LLYGCGLRI+EAL L P + 
Sbjct: 141 SLPKALTDREALKVVTADAQLA----EEPWIAARNAAVLTLLYGCGLRIAEALDLIPADF 196

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
               ++LR+ GKG K RIVP++ +  +A+  Y  LCP+  ++  + P+FRG RG  L P 
Sbjct: 197 SGPVTSLRVTGKGGKTRIVPMIAAAAEAVETYRKLCPY--HIEPEEPIFRGARGAKLQPA 254

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + QR +++LR  LGLP S T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ+YT V
Sbjct: 255 IIQREMQKLRAALGLPDSATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGV 314

Query: 302 NSKNGGDWMMEIYDQTHP 319
           +S      ++EIYD+ HP
Sbjct: 315 DSAR----LLEIYDRAHP 328


>gi|254713666|ref|ZP_05175477.1| site-specific tyrosine recombinase XerC [Brucella ceti M644/93/1]
 gi|261321407|ref|ZP_05960604.1| tyrosine recombinase xerC [Brucella ceti M644/93/1]
 gi|261323863|ref|ZP_05963060.1| tyrosine recombinase xerC [Brucella neotomae 5K33]
 gi|261294097|gb|EEX97593.1| tyrosine recombinase xerC [Brucella ceti M644/93/1]
 gi|261299843|gb|EEY03340.1| tyrosine recombinase xerC [Brucella neotomae 5K33]
          Length = 308

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 144/310 (46%), Positives = 201/310 (64%), Gaps = 13/310 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L   R+ WL++L+  R LS  TL +YE DTRQFL FL  +  E  +++ I  L   ++R
Sbjct: 7   DLAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLR 66

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +F++ RR    G R+L R L+G++S L++L+KR +   +    MR  ++  SLP+ L   
Sbjct: 67  SFLANRRNDGAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTAD 126

Query: 133 QALTLV--DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLR 189
            A  +V  D  +     E  WI ARN+A+L LLYGCGLRISEAL L+   + D  + ++ 
Sbjct: 127 DARRVVSADGQMA----EEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMT 182

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           I GKG K R+VPLLP+V KA+ +Y  LCPFDL+     PLFRG +G PL+  + QR +++
Sbjct: 183 ITGKGSKTRLVPLLPAVHKAVAQYRALCPFDLSAG--QPLFRGAKGGPLHAAIIQREMQK 240

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           LR  LGLP S T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ+YT V+++     
Sbjct: 241 LRAGLGLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQR---- 296

Query: 310 MMEIYDQTHP 319
           ++E+YD+THP
Sbjct: 297 LLEVYDKTHP 306


>gi|256059893|ref|ZP_05450079.1| site-specific tyrosine recombinase XerC [Brucella neotomae 5K33]
          Length = 309

 Score =  281 bits (718), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 144/310 (46%), Positives = 201/310 (64%), Gaps = 13/310 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L   R+ WL++L+  R LS  TL +YE DTRQFL FL  +  E  +++ I  L   ++R
Sbjct: 8   DLAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLR 67

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +F++ RR    G R+L R L+G++S L++L+KR +   +    MR  ++  SLP+ L   
Sbjct: 68  SFLANRRNDGAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTAD 127

Query: 133 QALTLV--DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLR 189
            A  +V  D  +     E  WI ARN+A+L LLYGCGLRISEAL L+   + D  + ++ 
Sbjct: 128 DARRVVSADGQMA----EEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMT 183

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           I GKG K R+VPLLP+V KA+ +Y  LCPFDL+     PLFRG +G PL+  + QR +++
Sbjct: 184 ITGKGSKTRLVPLLPAVHKAVAQYRALCPFDLSAG--QPLFRGAKGGPLHAAIIQREMQK 241

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           LR  LGLP S T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ+YT V+++     
Sbjct: 242 LRAGLGLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQR---- 297

Query: 310 MMEIYDQTHP 319
           ++E+YD+THP
Sbjct: 298 LLEVYDKTHP 307


>gi|163761399|ref|ZP_02168473.1| site-specific tyrosine recombinase XerC [Hoeflea phototrophica
           DFL-43]
 gi|162281394|gb|EDQ31691.1| site-specific tyrosine recombinase XerC [Hoeflea phototrophica
           DFL-43]
          Length = 316

 Score =  281 bits (718), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 147/322 (45%), Positives = 202/322 (62%), Gaps = 11/322 (3%)

Query: 1   MEGNNLPE---IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK 57
           M+G  + +   I + +++ E+Q WL  L  ER L+  T ++YE D RQFL FL  +    
Sbjct: 1   MDGQTMEKPLVIAAPDVVAEQQRWLAQLTEERRLADKTAEAYERDLRQFLGFLTLHLGGP 60

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
             I  +  L   ++RAF+++RR +  G R+L R L+GI+SFL++L+++ +   +     R
Sbjct: 61  PKISDLADLRPLDLRAFMAERRREGAGARTLGRGLAGIRSFLRHLERKGLANAAGATATR 120

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             K+  SLP+ L+ + A  +VD   L  S E  WI AR++A+L LLYGCGLRISEAL LT
Sbjct: 121 APKQPKSLPKPLSARDARRVVD-ADLQLSDE-PWIAARDAAVLTLLYGCGLRISEALGLT 178

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
             +I  D  +LRI GKG K RIVPLLP  R AI +Y +L PF    +   P+FRG RG P
Sbjct: 179 RNDIPRDGESLRITGKGGKTRIVPLLPIARSAISDYLELSPFRPAADA--PMFRGARGCP 236

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L P + Q+ +R LR  L LP + T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ+
Sbjct: 237 LQPAIVQKAMRALRSALDLPETATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQV 296

Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319
           YT V +      ++EIYD+ HP
Sbjct: 297 YTGVETSR----LLEIYDRAHP 314


>gi|148559918|ref|YP_001259740.1| site-specific tyrosine recombinase XerC [Brucella ovis ATCC 25840]
 gi|148371175|gb|ABQ61154.1| tyrosine recombinase XerC [Brucella ovis ATCC 25840]
          Length = 315

 Score =  280 bits (717), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 143/310 (46%), Positives = 201/310 (64%), Gaps = 13/310 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L   R+ WL++L+  R LS  TL +YE DTRQFL FL  +  E  +++ I  L   ++R
Sbjct: 14  DLAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLR 73

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +F++ RR    G R+L R L+G++S L++L+KR +   +    MR  ++  SLP+ L   
Sbjct: 74  SFLANRRNDGAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTAD 133

Query: 133 QALTLV--DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLR 189
            A  +V  D  +     E  WI ARN+A+L LLYGCGLRISEAL L+   + D  + ++ 
Sbjct: 134 DARRVVSADGQMA----EEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMT 189

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           I GKG K R+VPLLP+V KA+ +Y  LCPFDL+     PLFRG +G PL+  + QR +++
Sbjct: 190 ITGKGSKTRLVPLLPAVHKAVAQYRALCPFDLSAG--QPLFRGAKGGPLHAAIIQREMQK 247

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           LR  LGLP S T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ+YT ++++     
Sbjct: 248 LRAGLGLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGIDTQR---- 303

Query: 310 MMEIYDQTHP 319
           ++E+YD+THP
Sbjct: 304 LLEVYDKTHP 313


>gi|254717978|ref|ZP_05179789.1| site-specific tyrosine recombinase XerC [Brucella sp. 83/13]
 gi|265982921|ref|ZP_06095656.1| tyrosine recombinase xerC [Brucella sp. 83/13]
 gi|306838931|ref|ZP_07471758.1| tyrosine recombinase XerC [Brucella sp. NF 2653]
 gi|306842934|ref|ZP_07475568.1| tyrosine recombinase XerC [Brucella sp. BO2]
 gi|264661513|gb|EEZ31774.1| tyrosine recombinase xerC [Brucella sp. 83/13]
 gi|306286862|gb|EFM58387.1| tyrosine recombinase XerC [Brucella sp. BO2]
 gi|306406001|gb|EFM62253.1| tyrosine recombinase XerC [Brucella sp. NF 2653]
          Length = 315

 Score =  280 bits (715), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 143/310 (46%), Positives = 200/310 (64%), Gaps = 13/310 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L   R+ WL++L+  R LS  TL +YE DTRQFL FL  +  E  +++ I  L   ++R
Sbjct: 14  DLAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLR 73

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +F++ RR    G R+L R L+G++S L++L+KR +   +    MR  ++  SLP+ L   
Sbjct: 74  SFLANRRNDGAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTAD 133

Query: 133 QALTLV--DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLR 189
            A  +V  D  +     E  WI ARN+A+L LLYGCGLRISEAL L+   + D  + ++ 
Sbjct: 134 DARRVVSADGQMA----EEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMT 189

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           I GKG K R+VPLLP+V KA+ +Y  LCPFDL+     PLFRG +G PL+  + QR +++
Sbjct: 190 ITGKGSKTRLVPLLPAVHKAVAQYRALCPFDLSAG--QPLFRGAKGGPLHAAIIQREMQK 247

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           LR  LGLP S T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ+YT V+++     
Sbjct: 248 LRAGLGLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQR---- 303

Query: 310 MMEIYDQTHP 319
           ++E+YD+ HP
Sbjct: 304 LLEVYDKAHP 313


>gi|49476240|ref|YP_034281.1| site-specific tyrosine recombinase XerC [Bartonella henselae str.
           Houston-1]
 gi|49239048|emb|CAF28348.1| Integrase /recombinase xerC [Bartonella henselae str. Houston-1]
          Length = 326

 Score =  279 bits (714), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 150/307 (48%), Positives = 196/307 (63%), Gaps = 9/307 (2%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +L  R+NWL NL   R ++  T Q+YE DTRQFL FL  +     T + +  L   ++RA
Sbjct: 22  VLAARKNWLDNLLGTRRMATYTAQAYERDTRQFLFFLCQHLGHTPTFKDLANLRVIDLRA 81

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++ RR   I  RSL R ++GI+SF  YL +  I +      +R  K   SLP+ LN K 
Sbjct: 82  YLAYRRKHDISARSLSRGMAGIRSFFNYLSREGIASIPAAKLVRTPKHPKSLPKPLNIKS 141

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-LRIQG 192
           AL LV     +      WI ARN+A+L LLYGCG+RISEALSLTP+   D Q T L + G
Sbjct: 142 ALHLVKQE--NQQENEPWIIARNTAVLMLLYGCGMRISEALSLTPEQFSDPQKTSLFVTG 199

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R+VPL+  V +AI  Y   CP+ L L+ Q P+FRG RG PL P + Q+ +R LR 
Sbjct: 200 KGGKTRLVPLIKVVYEAIQNYLKCCPYPL-LDNQ-PMFRGARGGPLQPAIIQKTVRNLRA 257

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           YLGLP + T HTLRHSFATHLLS GGDLR+IQ +LGH  LSTTQ+YT+V++K+    ++E
Sbjct: 258 YLGLPETATPHTLRHSFATHLLSRGGDLRTIQELLGHACLSTTQVYTHVDTKH----LLE 313

Query: 313 IYDQTHP 319
           IY + HP
Sbjct: 314 IYQKAHP 320


>gi|17986431|ref|NP_539065.1| site-specific tyrosine recombinase XerC [Brucella melitensis bv. 1
           str. 16M]
 gi|256045523|ref|ZP_05448406.1| site-specific tyrosine recombinase XerC [Brucella melitensis bv. 1
           str. Rev.1]
 gi|260562833|ref|ZP_05833319.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. 16M]
 gi|265991947|ref|ZP_06104504.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. Rev.1]
 gi|34222942|sp|Q8YJD9|XERC_BRUME RecName: Full=Tyrosine recombinase xerC
 gi|17982026|gb|AAL51329.1| integrase [Brucella melitensis bv. 1 str. 16M]
 gi|260152849|gb|EEW87941.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. 16M]
 gi|263003013|gb|EEZ15306.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. Rev.1]
          Length = 315

 Score =  278 bits (712), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 145/310 (46%), Positives = 202/310 (65%), Gaps = 13/310 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L   R+ WL++L+  R LS  TL +YE DTRQFL FL  +  E  +++ I  L   ++R
Sbjct: 14  DLAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLR 73

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +F++ RR    G R+L R L+G++S L++L+KR +   +    MR  ++  SLP+ L   
Sbjct: 74  SFLANRRNDGAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTAD 133

Query: 133 QALTLV--DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLR 189
            A  +V  D  +     E  WI ARN+A+L LLYGCGLRISEAL L+   + D  + ++ 
Sbjct: 134 DARRVVSADGQMA----EEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMT 189

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           I GKG K R+VPLLP+V KA+ +Y  LCPFDL+   QL LFRG +G PL+  + QR +++
Sbjct: 190 ITGKGSKTRLVPLLPAVHKAVAQYRALCPFDLSAG-QL-LFRGAKGGPLHAAIIQREMQK 247

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           LR  LGLP S T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ+YT V+++     
Sbjct: 248 LRAGLGLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQR---- 303

Query: 310 MMEIYDQTHP 319
           ++E+YD+THP
Sbjct: 304 LLEVYDKTHP 313


>gi|239833042|ref|ZP_04681371.1| tyrosine recombinase XerC [Ochrobactrum intermedium LMG 3301]
 gi|239825309|gb|EEQ96877.1| tyrosine recombinase XerC [Ochrobactrum intermedium LMG 3301]
          Length = 315

 Score =  278 bits (712), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 142/310 (45%), Positives = 203/310 (65%), Gaps = 13/310 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L   R+ WL+ L+  R LS+ TL +YE DTRQFL FL  +  E  +++ +  L   ++R
Sbjct: 14  DLAAAREEWLKTLKDARRLSENTLDAYERDTRQFLNFLTGHLGEPPSLKDVGNLRIADLR 73

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +F++ RR + +G R+L R L+G++S L++L+KR +   +    MR  ++  SLP+ L  +
Sbjct: 74  SFLASRRNEGVGARTLGRGLAGVRSLLRHLEKRGLANAAGASAMRAPRQPKSLPKPLTAE 133

Query: 133 QALTLV--DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLR 189
            A  +V  D  L     E  WI ARN+A+L LLYGCGLRISEAL LT   + D  + ++ 
Sbjct: 134 DARRVVAADGQLA----EEPWIAARNAAVLTLLYGCGLRISEALGLTGDALSDSTALSIT 189

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           I GKG+K R+VPLLP V +A+ +Y  LCPFDL+ +   PLFRG +G  L+  + QR +++
Sbjct: 190 ITGKGNKARLVPLLPVVHRAVAQYRTLCPFDLSADK--PLFRGAKGGILHAAIIQREMQK 247

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           LR  LGLP S T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ+YT V+++     
Sbjct: 248 LRAGLGLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTER---- 303

Query: 310 MMEIYDQTHP 319
           ++E+YD+ HP
Sbjct: 304 LLEVYDKAHP 313


>gi|240851325|ref|YP_002972728.1| integrase /recombinase XerC [Bartonella grahamii as4aup]
 gi|240268448|gb|ACS52036.1| integrase /recombinase XerC [Bartonella grahamii as4aup]
          Length = 322

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 151/319 (47%), Positives = 205/319 (64%), Gaps = 14/319 (4%)

Query: 5   NLPEI-VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N+P I     +L  R+NWL+ L   R +S  T+Q+YE DTRQFL FL  +     T+  +
Sbjct: 12  NIPLIPADHAILNARKNWLECLVQTRRMSAQTMQAYERDTRQFLSFLCQHLSHTPTLTDL 71

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
             L  +++RA+++ RRT  +  RSL R ++GI+SF KYL +  I        +R+ K   
Sbjct: 72  AHLRISDLRAYLAYRRTNNVSARSLSRGVAGIRSFFKYLSREGIVNVPAAQLIRSPKHPK 131

Query: 124 SLPRALNEKQALTLV--DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           SLP+ L  K AL +V  +N L        WI ARN+A+L LLYGCG+RISEALSLTP+  
Sbjct: 132 SLPKPLAIKSALHIVKQENQL----ENEPWISARNAAVLMLLYGCGMRISEALSLTPEQF 187

Query: 182 MD-DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
            D ++++L I GKG K R+VPL+  V +A+  Y   CP+ L +N Q P+FRG RG PL P
Sbjct: 188 SDPEKTSLFITGKGGKTRLVPLIKVVYEAVQNYLKCCPYPL-VNNQ-PIFRGARGGPLQP 245

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            + Q+ +R LR  LGLP + T HTLRHSFATHLLS GGDLR+IQ +LGH  LSTTQIYT+
Sbjct: 246 AIIQKTVRNLRASLGLPETATPHTLRHSFATHLLSRGGDLRTIQELLGHASLSTTQIYTH 305

Query: 301 VNSKNGGDWMMEIYDQTHP 319
           V++    D +++IY + HP
Sbjct: 306 VDT----DHLLKIYQKAHP 320


>gi|153008277|ref|YP_001369492.1| site-specific tyrosine recombinase XerC [Ochrobactrum anthropi ATCC
           49188]
 gi|151560165|gb|ABS13663.1| tyrosine recombinase XerC [Ochrobactrum anthropi ATCC 49188]
          Length = 315

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 140/310 (45%), Positives = 203/310 (65%), Gaps = 13/310 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L   R+ WL+ L+  R LS+ TL++YE DTRQFL FL  +  E  +++ +  L   ++R
Sbjct: 14  DLAAAREEWLKTLKDARRLSENTLEAYERDTRQFLNFLTGHLGEPPSLKDVGNLRIADLR 73

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +F++ RR + +G R+L R L+G++S L++L+KR +   +    MR  ++  SLP+ L  +
Sbjct: 74  SFLASRRNEGVGARTLGRGLAGVRSLLRHLEKRGLANAAGASAMRAPRQPKSLPKPLTAE 133

Query: 133 QALTLV--DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLR 189
            A  +V  D  +     E  WI ARN+A+L LLYGCGLRISEAL L    + D  + ++ 
Sbjct: 134 DARRVVAADGQMA----EEPWIAARNAAVLTLLYGCGLRISEALGLMGDALSDSTARSIT 189

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           I GKG+K R+VPLLP V +A+ +Y  LCPFDL+ +   PLFRG +G  L+  + QR +++
Sbjct: 190 ITGKGNKARLVPLLPIVHRAVAQYRTLCPFDLSADK--PLFRGAKGGVLHAAIIQREMQK 247

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           LR  LGLP S T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ+YT V+++     
Sbjct: 248 LRAGLGLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTER---- 303

Query: 310 MMEIYDQTHP 319
           ++E+YD+ HP
Sbjct: 304 LLEVYDKAHP 313


>gi|114706518|ref|ZP_01439419.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506]
 gi|114537910|gb|EAU41033.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506]
          Length = 319

 Score =  276 bits (707), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 141/322 (43%), Positives = 201/322 (62%), Gaps = 9/322 (2%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           +N+    S  +++E   WL+ L  ER  S+ T+++YE D RQF+IFL  Y      +   
Sbjct: 2   SNVLIFASKSVMREISAWLEALRNERQASEETVEAYERDVRQFMIFLTDYHARPSELDDF 61

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
             L   ++R+F++ RR    G RSL R LSGI+SFL++L+KR + + +    MR  K++ 
Sbjct: 62  ADLKPMDLRSFLAARRRDGAGARSLGRGLSGIRSFLRHLEKRGLASSAGAKAMRAPKQTK 121

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            LPR L+   AL + +     ++    W+ AR+ A+L LLYGCGLRISEAL+L    + D
Sbjct: 122 GLPRPLSVAGALDVTEEADAFSTE--PWVGARDVAVLTLLYGCGLRISEALTLRGDALTD 179

Query: 184 DQS-TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           + + ++ I+GKG K R+VPL+P+V +A+  Y  LCP DL+     PLFRG+RG PL P +
Sbjct: 180 EMARSMTIRGKGGKTRLVPLIPAVHEAVATYRRLCPHDLDAG--HPLFRGVRGGPLRPQI 237

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            QR + +LR   GLP S T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ YT V+
Sbjct: 238 VQRNMARLRGAFGLPPSATPHALRHSFATHLLAAGGDLRTIQDLLGHASLSTTQAYTAVD 297

Query: 303 SKNGGDWMMEIYDQTHPSITQK 324
           +    D ++ +YD  HP   +K
Sbjct: 298 A----DRLLSVYDNAHPRARRK 315


>gi|163869253|ref|YP_001610509.1| site-specific tyrosine recombinase XerC [Bartonella tribocorum CIP
           105476]
 gi|161018956|emb|CAK02514.1| integrase/recombinase XerC [Bartonella tribocorum CIP 105476]
          Length = 322

 Score =  276 bits (705), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 147/313 (46%), Positives = 200/313 (63%), Gaps = 13/313 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           V   +L  R+NWL+ L   R +S  T Q+YE DTRQFL FL  +  +  T+  +  L  +
Sbjct: 18  VDHAVLTARKNWLECLVKTRRMSAQTAQAYERDTRQFLFFLCQHLGQAPTLNDLAHLRVS 77

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++RA+++ RRT  +  RSL R ++GI+SF KYL +  I        +++ K   SLP+ L
Sbjct: 78  DLRAYLAYRRTNNVSARSLSRGVAGIRSFFKYLSREGIVNVPAAQLIKSPKHPKSLPKPL 137

Query: 130 NEKQALTLV--DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQS 186
             + AL +V  +N L        WI+ARN+A+L LLYGCG+RISEALSLTP+   D +++
Sbjct: 138 AIQSALHIVKQENQL----ENEPWINARNAAVLMLLYGCGMRISEALSLTPEQFSDPEKT 193

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           +L I GKG K R+VPL+  V +A+  Y   CP+ L  N   PLFRG RG PL P + Q+ 
Sbjct: 194 SLFITGKGRKTRLVPLIKIVYEAVQNYLKCCPYPLRDN--QPLFRGARGGPLQPAIIQKT 251

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +R LR  LGLP + T HTLRHSFATHLLS GGDLR+IQ +LGH  LSTTQ YT+V++   
Sbjct: 252 VRNLRASLGLPETATPHTLRHSFATHLLSRGGDLRTIQELLGHASLSTTQTYTHVDT--- 308

Query: 307 GDWMMEIYDQTHP 319
            D ++EIY + HP
Sbjct: 309 -DHLLEIYQKAHP 320


>gi|319899442|ref|YP_004159539.1| integrase/recombinase XerC [Bartonella clarridgeiae 73]
 gi|319403410|emb|CBI76978.1| integrase/recombinase XerC [Bartonella clarridgeiae 73]
          Length = 322

 Score =  273 bits (698), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 146/317 (46%), Positives = 203/317 (64%), Gaps = 10/317 (3%)

Query: 5   NLPEI-VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N+P I     LL  R+NWL++L   R ++  T  +YE DTRQFL FL  +   + T+  +
Sbjct: 12  NIPLIPADHTLLIARKNWLESLVQTRRMTAQTAIAYERDTRQFLFFLCQHLGYQPTLNDL 71

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
             L   + RA+++ RRTQ I  RSL R+++ ++SF  YL + K         +R  K   
Sbjct: 72  ANLRVADFRAYLAYRRTQNINARSLSRNMASLRSFFNYLSREKEVNVPAAKLVRTPKYPK 131

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           SLP+AL  + AL +V     +      WI ARN+AIL LLYGCG+RISEAL+LTP+   D
Sbjct: 132 SLPKALTIESALRIVKEE--NQQENEPWIIARNTAILILLYGCGMRISEALALTPEQFAD 189

Query: 184 DQ-STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
               +L + GKG K R+VP++P V +A+  Y   CP+ L LN Q P+FRG+RGKPL P +
Sbjct: 190 PSIKSLSVTGKGGKTRLVPMIPIVHEAVENYLKCCPYPL-LNNQ-PIFRGVRGKPLQPAI 247

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            QR ++ LR +LGLP +TT H LRHSFATHLLS GGDLR+IQ +LGH  LSTTQ+YT+++
Sbjct: 248 IQRTVQNLRAHLGLPETTTPHALRHSFATHLLSRGGDLRTIQELLGHACLSTTQVYTHID 307

Query: 303 SKNGGDWMMEIYDQTHP 319
           +    ++++EIY + HP
Sbjct: 308 T----NYLLEIYQKAHP 320


>gi|49474762|ref|YP_032804.1| site-specific tyrosine recombinase XerC [Bartonella quintana str.
           Toulouse]
 gi|49240266|emb|CAF26736.1| Integrase /recombinase xerC [Bartonella quintana str. Toulouse]
          Length = 322

 Score =  273 bits (697), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 146/307 (47%), Positives = 196/307 (63%), Gaps = 9/307 (2%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +L  R+NWL NL   R ++  T Q+YE DTRQFL FL  +   K T   +  L  T++RA
Sbjct: 22  VLAARKNWLDNLLQTRRMATHTAQAYERDTRQFLSFLCQHLGHKPTFHDLANLRVTDLRA 81

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++ RRT  I  RSL R ++G++SF  YL +  I +      +R  K S SLP+ L  K 
Sbjct: 82  YLAYRRTLNISARSLSRGMAGLRSFFNYLSREGIVSIPASKLVRTPKYSKSLPKPLAIKS 141

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQG 192
           AL +V     +      WI ARN+A+L LLYGCG+RISEAL+LTP+   D ++++L + G
Sbjct: 142 ALHVVKQE--NQQENESWIIARNAAVLILLYGCGMRISEALALTPEQFSDPEKTSLFVTG 199

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R+VPL+  V + I  Y   CP+ L  N   P+FRG RG PL+P + QR +R LR 
Sbjct: 200 KGGKTRLVPLIKVVYETIQNYLKCCPYPLVEN--QPMFRGARGGPLHPAIIQRTVRNLRS 257

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            LGLP + T H+LRHSFATHLLS GGDLR+IQ +LGH  LSTTQIYT+V++    D ++E
Sbjct: 258 SLGLPETATPHSLRHSFATHLLSRGGDLRTIQELLGHASLSTTQIYTHVDT----DRLLE 313

Query: 313 IYDQTHP 319
           IY + HP
Sbjct: 314 IYQKAHP 320


>gi|319404836|emb|CBI78437.1| integrase/recombinase XerC [Bartonella rochalimae ATCC BAA-1498]
          Length = 321

 Score =  271 bits (692), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 145/308 (47%), Positives = 198/308 (64%), Gaps = 11/308 (3%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL  R+NWL +L   R ++  T  +YE DTRQFL FL  +   + T+  +  L   ++RA
Sbjct: 21  LLIARKNWLDHLTQTRRMALHTAVAYERDTRQFLFFLCQHLGYQPTLDDLADLRVADLRA 80

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++ RRTQ I  RSL R+++ ++SF  YL + K+        +R  K   SLP+ L  + 
Sbjct: 81  YLAYRRTQNISARSLSRNMASLRSFFNYLSREKLVNVPAAKLVRTPKHPKSLPKPLTIES 140

Query: 134 ALTLVDNVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQ 191
           AL +V         ET+ WI ARN+AIL LLYGCG+RISEAL+LTP+   D    +L + 
Sbjct: 141 ALRIVKE---ENQQETEPWIIARNTAILILLYGCGMRISEALALTPEQFADPSIKSLSVN 197

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG K R++PL+P V KAI  Y   CP+ L +N Q P+F G+RGKPL P + QR ++ LR
Sbjct: 198 GKGGKTRLIPLIPIVHKAIENYLKCCPYPL-VNTQ-PIFLGVRGKPLQPAIIQRTVQNLR 255

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             LGLP +TT H LRHSFATHLLS GGDLR+IQ +LGH  LSTTQIYT++++ +    ++
Sbjct: 256 ARLGLPETTTPHALRHSFATHLLSRGGDLRTIQELLGHACLSTTQIYTHIDTNH----LL 311

Query: 312 EIYDQTHP 319
           EIY + HP
Sbjct: 312 EIYQKAHP 319


>gi|319406320|emb|CBI79957.1| integrase/recombinase XerC [Bartonella sp. AR 15-3]
          Length = 321

 Score =  269 bits (688), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 146/310 (47%), Positives = 202/310 (65%), Gaps = 15/310 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL  R+NWL +L   R ++  T+ +YE DTRQFL FL  +   + T+  +  L   ++RA
Sbjct: 21  LLIARKNWLDHLTQTRRMAVHTVVAYERDTRQFLFFLCKHLGYQPTLNDLADLRVADLRA 80

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++ RRTQ I  RSL R+++ ++SF  YL + ++        +R  K   SLP++L  + 
Sbjct: 81  YLAYRRTQNINARSLSRNMASLRSFFNYLSREQLVNVPAAKLVRTPKYPKSLPKSLTIES 140

Query: 134 ALTLV--DNVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLR 189
           AL +V  DN       ET+ WI ARN+AIL LLYGCG+RISEAL+LTP+   D    +L 
Sbjct: 141 ALRIVREDN-----QQETEPWIIARNTAILILLYGCGMRISEALALTPEKFSDPNIKSLP 195

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           I GKG K R++PL+P    AI  Y   CP+ L +N Q P+FRG+RGKPL P + QR ++ 
Sbjct: 196 ITGKGGKTRLIPLIPIAHTAIKNYLKCCPYPL-VNNQ-PIFRGVRGKPLQPAIIQRTVQN 253

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           LR +LGLP +TT H LRHSFATHLLS GGDLR+IQ +LGH  LSTTQIYT++++ +    
Sbjct: 254 LRAHLGLPETTTPHALRHSFATHLLSRGGDLRTIQELLGHACLSTTQIYTHIDTNH---- 309

Query: 310 MMEIYDQTHP 319
           ++EIY + HP
Sbjct: 310 LLEIYQKAHP 319


>gi|319407796|emb|CBI81447.1| integrase/recombinase XerC [Bartonella sp. 1-1C]
          Length = 321

 Score =  269 bits (687), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 143/308 (46%), Positives = 198/308 (64%), Gaps = 11/308 (3%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL  R+NWL +L   R ++  T  +YE DTRQFL FL  +   +  +  +  L   ++RA
Sbjct: 21  LLIARKNWLDHLIQTRRMALHTAVAYERDTRQFLFFLCQHLGYQPALNDLADLHVADLRA 80

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++ RRTQ I  RSL R+++ ++SF  YL + K+        +R  K   SLP+ L  + 
Sbjct: 81  YLAYRRTQNISARSLSRNMASLRSFFNYLSREKLVNVPAAKLVRTPKHRKSLPKPLTIES 140

Query: 134 ALTLVDNVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQ 191
           AL +V         ET+ WI ARN+AIL LLYGCG+RISEAL+LTP+   D    +L + 
Sbjct: 141 ALRIVKE---ENQQETEPWIIARNTAILILLYGCGMRISEALALTPEQFADPSIKSLSVT 197

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG K R++PL+P V KAI  Y   CP+ L +N Q P+F G+RGKPL P + QR ++ LR
Sbjct: 198 GKGGKTRLIPLIPIVHKAIENYLKCCPYPL-VNTQ-PIFLGVRGKPLQPAIIQRAVQNLR 255

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            +LGLP +TT H LRHSFATHLLS GGDLR+IQ +LGH  LSTTQ+YT++++ +    ++
Sbjct: 256 AHLGLPETTTPHALRHSFATHLLSRGGDLRTIQELLGHACLSTTQVYTHIDTNH----LL 311

Query: 312 EIYDQTHP 319
           EIY + HP
Sbjct: 312 EIYQKAHP 319


>gi|319409399|emb|CBI83043.1| integrase/recombinase XerC [Bartonella schoenbuchensis R1]
          Length = 332

 Score =  269 bits (687), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 141/324 (43%), Positives = 207/324 (63%), Gaps = 10/324 (3%)

Query: 2   EGNNLPEIVSFE-LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           +G N P I + + LL  R+ WL+ L   R ++  T Q+YE DTRQFLIFL  +   ++T 
Sbjct: 9   KGQNAPLIPAEQGLLVARKKWLEGLVKTRRMATHTAQAYERDTRQFLIFLCHHLGHEVTC 68

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           + +  L   ++RA+++ RRT KI  RSL R+++ ++SF  YL +  I        +R  K
Sbjct: 69  KDLADLRVVDLRAYLAHRRTLKISARSLSRNVASLRSFFNYLSREGIVDTLAAKLIRTPK 128

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LP+ LN + AL ++     +   +  WI ARN A+L LLYGCG+RISEAL+LTP+ 
Sbjct: 129 HPKLLPKPLNVQAALHIIKPE--NQQEDEPWIIARNVAVLALLYGCGMRISEALALTPEQ 186

Query: 181 IMDDQ-STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
             D + ++L + GKG K R+VPL+ +V + +  Y   CP+ L ++ Q P+FRG+RG PL 
Sbjct: 187 FSDPEITSLSVIGKGGKTRLVPLIKTVYEMVETYLKCCPYPL-VSTQ-PMFRGVRGGPLQ 244

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           P + QR ++ LR  LGLP +TT H LRHSFATHLLS GGDLR+IQ +LGH  LSTTQ+YT
Sbjct: 245 PAIIQRLVQNLRARLGLPETTTPHALRHSFATHLLSRGGDLRTIQELLGHACLSTTQVYT 304

Query: 300 NVNSKNGGDWMMEIYDQTHPSITQ 323
           ++++    D ++E+Y + HP  ++
Sbjct: 305 HIDT----DRLLEVYQKAHPRASK 324


>gi|260431124|ref|ZP_05785095.1| site-specific tyrosine recombinase XerC [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260414952|gb|EEX08211.1| site-specific tyrosine recombinase XerC [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 306

 Score =  265 bits (678), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 135/301 (44%), Positives = 192/301 (63%), Gaps = 9/301 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q WL++L    G S  T  +Y  D   FL F+  +  E+  +  + ++S T++RA+++++
Sbjct: 13  QLWLESLSALAGRSDNTTNAYRRDVTDFLAFMTLHHNERQGLAALERISVTDMRAWMAQQ 72

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R   +G RSL R LS +KSF ++L +R+    + +L+ R  K +  LPR L E  A  ++
Sbjct: 73  RDSGVGARSLARKLSAVKSFYRWLAEREGFEPTAVLSTRAPKFTKKLPRPLAEDAARAMI 132

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           + V L +S +  W+ AR+ A++ LLYGCGLRISEALSLT  +     +TLRI GKGDK R
Sbjct: 133 ETVELQSSSD--WVAARDVAVVTLLYGCGLRISEALSLTGADA-PLPATLRIVGKGDKER 189

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVP++P+ R+A+  Y +LCP         PLFRG+RGK LNP   Q  + + R  LGLP 
Sbjct: 190 IVPVIPAARQAVDRYLELCPHPQGAT--EPLFRGVRGKALNPKAIQSVMAKARMQLGLPA 247

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + T H +RHSFATHLLS GGDLR+IQ +LGH  LSTTQ YT V++      +ME+Y++TH
Sbjct: 248 TATPHAMRHSFATHLLSAGGDLRAIQELLGHASLSTTQAYTAVDTAR----LMEVYNRTH 303

Query: 319 P 319
           P
Sbjct: 304 P 304


>gi|304394248|ref|ZP_07376171.1| tyrosine recombinase XerC [Ahrensia sp. R2A130]
 gi|303293688|gb|EFL88065.1| tyrosine recombinase XerC [Ahrensia sp. R2A130]
          Length = 342

 Score =  264 bits (675), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 132/312 (42%), Positives = 193/312 (61%), Gaps = 16/312 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K R+ WL+ +E ER ++  T+++Y+ D +QF +FL  Y      ++    L    +RA++
Sbjct: 37  KARERWLRWMETERRMAARTMEAYDRDLQQFCLFLTDYHGRPAKVKDFADLRPISLRAYL 96

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++RR    G R+L R L+GI SF+++L+++ + + + I  MR  ++  +LP+ +   QAL
Sbjct: 97  AQRRNTGAGPRTLARGLAGIGSFIRHLERQGLASSAGITAMRAPRQPRTLPKPVRADQAL 156

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--------MDDQST 187
            L +       HE  WI AR++A++ LLYGCGLR+ EAL LTP ++             T
Sbjct: 157 RLTETS--EQLHEEPWIAARDAALMTLLYGCGLRLGEALGLTPFDLGITNMAAPTVTTDT 214

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           LRI GKG K R+VPLLP V +AI  Y  LCP  +  +   P+FRG+RG P+ P VFQR +
Sbjct: 215 LRITGKGGKTRLVPLLPVVGEAIASYLRLCPHVIEADA--PIFRGMRGGPVQPAVFQRAM 272

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            ++R  LGLP + T H LRHSFATHLL NGGDLR+IQ +LGH  LSTTQ YT V++++  
Sbjct: 273 ARMRGALGLPSTATPHALRHSFATHLLGNGGDLRTIQELLGHASLSTTQKYTAVDTES-- 330

Query: 308 DWMMEIYDQTHP 319
             +M  +   HP
Sbjct: 331 --LMASWAAAHP 340


>gi|254460911|ref|ZP_05074327.1| tyrosine recombinase XerC [Rhodobacterales bacterium HTCC2083]
 gi|206677500|gb|EDZ41987.1| tyrosine recombinase XerC [Rhodobacteraceae bacterium HTCC2083]
          Length = 306

 Score =  261 bits (668), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 130/301 (43%), Positives = 192/301 (63%), Gaps = 9/301 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++WL+  +  +G S+ T+++Y  DT  F+ F+  Y  E   +  + +++  ++RA++++ 
Sbjct: 13  EHWLETQKSLKGGSENTIKAYSADTADFIGFMTSYKSEPQGLAALARITTRDMRAWMAQT 72

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R  ++  RSL R LS +KSF ++L +R+    + +L +R  K    LPR L  + A  ++
Sbjct: 73  RGDEVSARSLARKLSSVKSFYRWLAEREGFEPTAVLTIRAPKFQKKLPRPLAVEAAKAMI 132

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           + V   T+H   W+ AR+SA+L LLYGCGLRISEAL LT  ++    + LRI GKG K R
Sbjct: 133 ETVEYQTAH--TWVAARDSAVLTLLYGCGLRISEALGLTGADV-PLPTALRILGKGGKER 189

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VP+LP+ R+A+  Y ++CP+ L  N   PLFRGIRG  LNP   Q  + + R  LGLP 
Sbjct: 190 VVPVLPAAREAVQAYLNICPYPLEPNA--PLFRGIRGGALNPRAVQSVMAKARMQLGLPA 247

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + T H +RHSFATHLLS GGDLRSIQ +LGH  LSTTQ YT V++      +ME+Y++ H
Sbjct: 248 TATPHAMRHSFATHLLSAGGDLRSIQELLGHSSLSTTQAYTAVDTAR----LMEVYERAH 303

Query: 319 P 319
           P
Sbjct: 304 P 304


>gi|121602434|ref|YP_988421.1| site-specific tyrosine recombinase XerC [Bartonella bacilliformis
           KC583]
 gi|120614611|gb|ABM45212.1| tyrosine recombinase xerC [Bartonella bacilliformis KC583]
          Length = 322

 Score =  260 bits (664), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 135/307 (43%), Positives = 192/307 (62%), Gaps = 9/307 (2%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +L  RQ+WL++L     ++  T+++YE DTRQFL FL  +   K T   +  L   ++R+
Sbjct: 22  VLAARQSWLESLLHIHRMATRTVEAYERDTRQFLFFLCQHLGRKPTYHDLADLQVADLRS 81

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++ RR Q +  RSL R+++ ++SF  YL +  +        +R  K + SLP+ L  K 
Sbjct: 82  YMAYRRKQMVSTRSLSRNMASMRSFFNYLSRENLVDVPAAKLVRTPKYAKSLPKTLTMKA 141

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-LRIQG 192
           ALT+V     +   +  WI ARN+A+L LLYGCG+RISEAL+LTP+   D   T L I G
Sbjct: 142 ALTIVKQG--NQQEDEPWIAARNAAVLTLLYGCGMRISEALALTPKQFSDPNVTSLSIVG 199

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R+VPL+ +V +++  Y   CP+ L  N   P+FRG RG PL P + QR ++ LR 
Sbjct: 200 KGGKTRLVPLIKTVYESVETYLKCCPYPLGDN--QPMFRGARGGPLQPAIIQRAVQNLRA 257

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            LGLP + T H LRHSFATHLLS GG+LR IQ +LGH  LSTTQ+YT ++S    D +++
Sbjct: 258 SLGLPKTATPHALRHSFATHLLSRGGNLRIIQELLGHASLSTTQVYTEIDS----DRLLD 313

Query: 313 IYDQTHP 319
           IY + HP
Sbjct: 314 IYQKAHP 320


>gi|254470878|ref|ZP_05084281.1| tyrosine site-specific integrase/recombinase protein [Pseudovibrio
           sp. JE062]
 gi|211960020|gb|EEA95217.1| tyrosine site-specific integrase/recombinase protein [Pseudovibrio
           sp. JE062]
          Length = 319

 Score =  259 bits (663), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 141/318 (44%), Positives = 203/318 (63%), Gaps = 9/318 (2%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
           G +L  I   ++    ++W+ +L  ER L++ TL++YE DTRQFL F+  Y  E + ++ 
Sbjct: 8   GEDLLIICKPDVTAAIEDWIDHLGSERRLAERTLEAYERDTRQFLRFMTSYEGEPVALRH 67

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +  L   + R F++ RR      R+L R L+GI+SFL +L++R     +    +R  +  
Sbjct: 68  LESLKPKDFRGFLATRRKDGAQTRTLARGLAGIRSFLSFLEERGEVNAAGAAAVRTPRLP 127

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI- 181
            SLP+ +  ++A  +V + L     +T W++ARN+A+  LLYGCGLRISEALSLTP    
Sbjct: 128 RSLPKPIPVEEAKAIVSSDLAF--EDTPWVEARNAAVFTLLYGCGLRISEALSLTPATAP 185

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
            +   +L+++GKG+K R+VP+LP V +AI  Y D CP+DL+ N   PLFRG+RG  LN  
Sbjct: 186 KEGDKSLKVRGKGNKERLVPVLPVVVEAIEAYKDQCPYDLSANS--PLFRGVRGGALNAR 243

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + Q  ++++R  LGLP + T H LRHSFATHLLS GGDLRSIQ +LGH  LSTTQIYT V
Sbjct: 244 MIQLAMQKIRSALGLPDTATPHALRHSFATHLLSEGGDLRSIQELLGHASLSTTQIYTEV 303

Query: 302 NSKNGGDWMMEIYDQTHP 319
           NS      +++ YD+ HP
Sbjct: 304 NSAQ----LLDAYDKAHP 317


>gi|110635731|ref|YP_675939.1| site-specific tyrosine recombinase XerC [Mesorhizobium sp. BNC1]
 gi|110286715|gb|ABG64774.1| tyrosine recombinase XerC subunit [Chelativorans sp. BNC1]
          Length = 313

 Score =  257 bits (657), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 140/310 (45%), Positives = 191/310 (61%), Gaps = 13/310 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ELLK R  WL +L+ ER L+ LTL +YE DTRQFL FL  +      +  I  L   ++R
Sbjct: 12  ELLKARAEWLSSLKEERRLAPLTLDAYERDTRQFLQFLTRHGGGAPGLCDIAALRPADLR 71

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           AF++ RR    G R+L R L+G++SFL++L+KR +   +    +R  +    LP+ L   
Sbjct: 72  AFLAARRIDGAGARTLGRGLAGVRSFLRFLEKRGLANAAGAGALRAPRAPKGLPKPLTAA 131

Query: 133 QA--LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLR 189
            A  +T  +  L     E  WI ARN+A+  LLYG GLRI EAL L   +I   +S +LR
Sbjct: 132 DAKRVTSGEGQLA----EEPWIAARNAAVFALLYGSGLRIGEALGLKGVDIAALRSGSLR 187

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG K R+VP+LP V +A+ EY  LCP+  +L  + PLFRG RG  L P + QR +++
Sbjct: 188 VTGKGSKTRVVPVLPVVGEAVAEYQRLCPY--HLEAEAPLFRGARGGALQPAIIQREMQK 245

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           +R  L LP + T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ+YT V++      
Sbjct: 246 MRSALNLPDTATPHALRHSFATHLLGRGGDLRAIQELLGHASLSTTQVYTAVDTSR---- 301

Query: 310 MMEIYDQTHP 319
           ++EIY+  HP
Sbjct: 302 LLEIYENAHP 311


>gi|332559009|ref|ZP_08413331.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides
           WS8N]
 gi|332276721|gb|EGJ22036.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides
           WS8N]
          Length = 306

 Score =  257 bits (656), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 132/301 (43%), Positives = 182/301 (60%), Gaps = 10/301 (3%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + WL +     G S  T+++Y  D   +L FLA +  E   ++ +  + + ++RA+++  
Sbjct: 14  EAWLTHQRAIEGASAHTIRAYAADVTGWLAFLAGHLGEGYGLKMLASVPHADLRAWMAHE 73

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R + +G RSL RSLS ++ F  +L +R+    + +L+ R  K    LPR L+E  A  L+
Sbjct: 74  RARGLGARSLARSLSAVRQFTGWLAEREGVDATAVLSARGPKFRRKLPRPLSEADAKALL 133

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             V    + +  WI AR+ A++ LLYGCGLRISEAL L P         LRI+GKGDK R
Sbjct: 134 STVAEEAAED--WIRARDLAVVTLLYGCGLRISEALGL-PGTAHPLPEVLRIRGKGDKER 190

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VP LP  R+A+  Y  LCPFDL   +   LFRG RG PLNP +  R + + R  LGLP 
Sbjct: 191 LVPSLPVAREAVARYAALCPFDLASGV---LFRGARGGPLNPRLVARTMERARATLGLPP 247

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + T H LRHSFATHLL+ GGDLRSIQ +LGH  LSTTQ+YT V+    G  +ME+Y + H
Sbjct: 248 TATPHALRHSFATHLLNAGGDLRSIQELLGHASLSTTQVYTAVD----GARLMEVYAKAH 303

Query: 319 P 319
           P
Sbjct: 304 P 304


>gi|307942817|ref|ZP_07658162.1| tyrosine recombinase XerC [Roseibium sp. TrichSKD4]
 gi|307773613|gb|EFO32829.1| tyrosine recombinase XerC [Roseibium sp. TrichSKD4]
          Length = 320

 Score =  256 bits (655), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 140/301 (46%), Positives = 188/301 (62%), Gaps = 10/301 (3%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR- 79
           WL +L  ER L+  TL SYE D RQFL FL  +      ++ + +L   + R+F++KRR 
Sbjct: 24  WLDHLADERRLADKTLVSYERDVRQFLRFLTGHLGGAPCVKDLGELRPADYRSFLAKRRQ 83

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
             K G RSL R LSG++SFL++L+KR     + I  +R  + + SLP+ L    A  +V 
Sbjct: 84  ADKAGSRSLARGLSGVRSFLRFLEKRGELNAAAIGAVRPPRIAQSLPKPLTVPDAEEIVS 143

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIR 198
             L   S    WI+ RN A+L LLYGCGLRISEALSLT +     D  T+RI GKG K R
Sbjct: 144 GDLGLESE--TWIETRNMAVLTLLYGCGLRISEALSLTGRTAPKGDARTMRITGKGGKER 201

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VP+LP V +AI  Y   CP+ +  N   PLF G RG  LNP + Q+ + ++R  LGLP 
Sbjct: 202 LVPMLPVVTQAIETYIAQCPYPITANG--PLFLGARGGALNPRLIQKAMEKMRSALGLPA 259

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           S T H LRHSFATHLL+ GGDLR+IQ ++GH  LS+TQIYT ++S +    ++  YD++H
Sbjct: 260 SATPHALRHSFATHLLAGGGDLRTIQELMGHASLSSTQIYTQIDSAS----LLAAYDRSH 315

Query: 319 P 319
           P
Sbjct: 316 P 316


>gi|149915599|ref|ZP_01904125.1| tyrosine recombinase [Roseobacter sp. AzwK-3b]
 gi|149810491|gb|EDM70334.1| tyrosine recombinase [Roseobacter sp. AzwK-3b]
          Length = 304

 Score =  256 bits (654), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 131/301 (43%), Positives = 185/301 (61%), Gaps = 9/301 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q WL+  +  +G +  TL++Y  D   FL F+  +  E   I  + ++  T++RA+++  
Sbjct: 11  QGWLETQKALKGAADNTLEAYGRDVAGFLTFMTGHKGEMQGIAPLTRIGVTDMRAWMAFI 70

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R + +G RSL R LS +KSF ++L +R+    + +L+ R  K    LPR L  + A  L+
Sbjct: 71  RGEDVGPRSLARKLSAVKSFYRWLAEREGFDATAVLSARAPKFQRKLPRPLAPEAAQDLI 130

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D + L ++  T W+ AR+ A++ LLYGCGLRISEAL LT  ++   ++ LRI GKG K R
Sbjct: 131 DTLELQSA--TPWVAARDQAVVTLLYGCGLRISEALGLTGGDLPMGEA-LRITGKGGKER 187

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVP++   R A+  Y  LCPFDL      PLFRG+RG PLNP   Q+     R  LGLP 
Sbjct: 188 IVPVIAPARDAVAHYARLCPFDLRPGT--PLFRGMRGGPLNPRAVQKVTEAARTQLGLPA 245

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + T H +RHSFATHLL+ GGDLR+IQ +LGH  LSTTQ YT V++      +ME+Y + H
Sbjct: 246 TATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTAVDTSR----LMEVYRKAH 301

Query: 319 P 319
           P
Sbjct: 302 P 302


>gi|118590571|ref|ZP_01547973.1| site-specific tyrosine recombinase XerC [Stappia aggregata IAM
           12614]
 gi|118437034|gb|EAV43673.1| site-specific tyrosine recombinase XerC [Stappia aggregata IAM
           12614]
          Length = 319

 Score =  256 bits (654), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 139/310 (44%), Positives = 193/310 (62%), Gaps = 13/310 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL +    WL +L  ER LS  TL +YE D RQFL FL  +      ++ I  L   + R
Sbjct: 18  ELNRRVDQWLDHLSDERRLSDKTLLAYERDLRQFLRFLTNHLGGAPDLKEIAALRPADFR 77

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F++ RR   +  RSL R L+GI+SFL++L++R     +    +R  +++ SLP+ ++ K
Sbjct: 78  GFLASRRRDGVQSRSLARGLAGIRSFLRFLERRGEVNAAASAAVRPPRQARSLPKPVSSK 137

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLR 189
            A+ +    L   S    W++ARN+A+L LLYGCGLRISEALSLT    M  ++   TLR
Sbjct: 138 DAIDVTSGELAMESE--PWLEARNAAVLTLLYGCGLRISEALSLT--GAMAPRTGTKTLR 193

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG K RIVP+LP+V +A+  Y  LCP+ ++     PLF G RG PLNP + Q  + +
Sbjct: 194 VVGKGGKERIVPILPAVCQAVEHYLKLCPYAISPGG--PLFLGARGGPLNPRMIQLAMAR 251

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           LR  LGLP S T H LRHSFATHLL+ GGDLR+IQ +LGH  L++TQIYT ++S +    
Sbjct: 252 LRGALGLPDSATPHALRHSFATHLLAGGGDLRTIQELLGHASLASTQIYTEIDSAH---- 307

Query: 310 MMEIYDQTHP 319
           ++  YD+ HP
Sbjct: 308 LLAAYDKAHP 317


>gi|254504224|ref|ZP_05116375.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
 gi|222440295|gb|EEE46974.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
          Length = 317

 Score =  256 bits (654), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 141/304 (46%), Positives = 194/304 (63%), Gaps = 17/304 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL +L  ER LS  TL +YE D RQFL FL  +      I+ I  L   + R F+++RR 
Sbjct: 24  WLDHLSDERRLSDKTLIAYERDLRQFLRFLTDHLGGAPGIKDIADLRPADFRGFLAQRRR 83

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            K+  RSL R L+GI+SFLK+L++R     +    +R  ++  SLP+ ++ K A+ +   
Sbjct: 84  NKVQSRSLARGLAGIRSFLKFLERRGEINAAASDAVRPPRQLRSLPKPVSAKDAIDITSG 143

Query: 141 VLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLT----PQNIMDDQSTLRIQGKGD 195
            L   + ET+ W++ARN+A+L LLYGCGLRISEALSLT    PQ       T+RI GKG 
Sbjct: 144 DL---AMETEAWVEARNAAVLTLLYGCGLRISEALSLTGKMAPQP---GTKTMRIIGKGR 197

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RIVP+LP+V +A+  Y  LCP+ ++ +   PLF G RG PLNP + Q  + +LR  LG
Sbjct: 198 KERIVPILPAVCEAVAHYVKLCPYAISPDG--PLFLGARGGPLNPRMIQLSMAKLRGALG 255

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           LP + T H LRHSFATHLL+ GGDLR+IQ +LGH  L++TQIYT ++S +    ++  YD
Sbjct: 256 LPETATPHALRHSFATHLLAGGGDLRTIQELLGHASLASTQIYTEIDSAH----LLAAYD 311

Query: 316 QTHP 319
           + HP
Sbjct: 312 KAHP 315


>gi|319780736|ref|YP_004140212.1| tyrosine recombinase XerC [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166624|gb|ADV10162.1| tyrosine recombinase XerC [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 312

 Score =  254 bits (649), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 140/308 (45%), Positives = 190/308 (61%), Gaps = 9/308 (2%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L   R++WL+ L  ER LS  T+++YE DTRQFL FL  +      I  I  L   ++R
Sbjct: 11  DLQAARESWLKMLARERRLSPETVEAYERDTRQFLHFLTGHCGGSPGISDIADLRPADLR 70

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F++ RR    G R+L R L+GI+S L++L++R +   +    +R  ++  SLP+ L   
Sbjct: 71  GFLAARRNGGAGARTLGRGLAGIRSLLRFLERRGLANAAGAAALRAPRQPKSLPKPLTAS 130

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-LRIQ 191
            A  +V   +     E  WI ARN+A+L LLYG GLRISEAL L   ++     T LR+ 
Sbjct: 131 DAKHIVS--IEGQLAEEPWIAARNAAVLTLLYGSGLRISEALGLAGADLASAADTVLRVA 188

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG K R+VP+LP   +AI EY  LCP+  +L+ +  LFRG RG PLNP + QR + +LR
Sbjct: 189 GKGGKTRLVPVLPVALRAIAEYRRLCPY--HLDPKGLLFRGARGGPLNPAIVQRDMAKLR 246

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             L LP + T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQIYT V++      ++
Sbjct: 247 SALNLPDTATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQIYTGVDTAR----LL 302

Query: 312 EIYDQTHP 319
           EIY+Q HP
Sbjct: 303 EIYEQAHP 310


>gi|182680028|ref|YP_001834174.1| integrase family protein [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182635911|gb|ACB96685.1| integrase family protein [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 323

 Score =  252 bits (644), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 132/302 (43%), Positives = 185/302 (61%), Gaps = 7/302 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + WL +L  ER +S LT ++Y  D RQFL FLA +     +++T  +L+  ++RAF++ R
Sbjct: 25  EAWLLHLSGERRVSALTAEAYARDLRQFLAFLAEHFGGAPSLETFAELTPADLRAFMTAR 84

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R Q +G RSL R L+G++SF ++L++           +R  K +  LP+ LN   A  +V
Sbjct: 85  RNQDVGSRSLSRQLAGLRSFARFLEREGKGKALVFSAVRTPKLARHLPKPLNPTAACEVV 144

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKI 197
           D      +    W+ AR++A+L LLYG GLRISEALSLT +   + +   L + GKG K 
Sbjct: 145 DVANRTDTERPAWVLARDAAVLGLLYGAGLRISEALSLTRREAPIGETDALTVTGKGRKT 204

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VP++  VR+ I  Y  LCP+ L    Q PLF G +G PL+P + Q  + Q+R  LGLP
Sbjct: 205 RMVPIIEPVRRGIESYLALCPYPLP--PQGPLFVGAKGGPLSPRIIQLAVEQMRGALGLP 262

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            S T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ+YT V+S+     ++E Y   
Sbjct: 263 KSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQLYTAVDSER----LLEAYRSA 318

Query: 318 HP 319
           HP
Sbjct: 319 HP 320


>gi|110679359|ref|YP_682366.1| site-specific tyrosine recombinase XerC [Roseobacter denitrificans
           OCh 114]
 gi|109455475|gb|ABG31680.1| tyrosine recombinase XerC [Roseobacter denitrificans OCh 114]
          Length = 306

 Score =  251 bits (642), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 128/301 (42%), Positives = 183/301 (60%), Gaps = 9/301 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q+WL +    +G ++ TL +Y+ D   FL F+  +      +  +  +S T++RA++++ 
Sbjct: 13  QSWLAHQRAIKGAAENTLIAYQGDVIDFLSFITAHKGAPQGLGALADVSVTDMRAWMAQT 72

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R   +  RSL R LS +K+F K+L  R+    + +L+ R  K    LPR L    A  L+
Sbjct: 73  RETGVAARSLARKLSAVKAFYKWLALREGFEPTAVLSTRAPKFQKKLPRPLAPDAARNLI 132

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D + + + H   W+ AR+ A++ LL+GCGLRISEALSLT  +     +TLRI GKG K R
Sbjct: 133 DAIEIQSQHP--WVCARDVAVVTLLWGCGLRISEALSLTAAD-APLPATLRISGKGGKER 189

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVP+LP+ R A+  Y  +CP     +   PLFR +RG PL PG  Q+ +   R  LGLP 
Sbjct: 190 IVPVLPAARDAVDAYVRMCPHPQTADA--PLFRAVRGGPLRPGAIQKVMAAARMQLGLPA 247

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + T H +RHSFATHLL+ GGDLR+IQ +LGH  LSTTQ YT V++      +ME+YD+TH
Sbjct: 248 TATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTAVDTVR----LMEVYDRTH 303

Query: 319 P 319
           P
Sbjct: 304 P 304


>gi|254512300|ref|ZP_05124367.1| tyrosine recombinase XerC [Rhodobacteraceae bacterium KLH11]
 gi|221536011|gb|EEE38999.1| tyrosine recombinase XerC [Rhodobacteraceae bacterium KLH11]
          Length = 306

 Score =  251 bits (640), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 127/302 (42%), Positives = 190/302 (62%), Gaps = 11/302 (3%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q+WL +L    G S+ T  +Y  D  +FL F+  +  E+  +  + +++ +++RA+++ +
Sbjct: 13  QHWLDSLRALAGRSENTQNAYRGDVTEFLSFMTLHHSERQGLAALERITVSDMRAWMADQ 72

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R   +  RSL R LS +KSF ++L +R+    + +L+ R  K +  LPR L E  A  ++
Sbjct: 73  RNSDVSARSLARKLSAVKSFYRWLAEREGFEPTAVLSTRAPKFTKKLPRPLAEDAARAMI 132

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKI 197
           + V L ++  + W+ AR+ A++ LLYGCGLRISEALSLT  +  + D  TLRI GKG+K 
Sbjct: 133 ETVELQSA--SDWVAARDVAVVTLLYGCGLRISEALSLTGADAPLPD--TLRILGKGEKE 188

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VP++P+ R A+  Y  LCP   + +  L  FRG+RG  LNP   Q  + + R  LGLP
Sbjct: 189 RVVPVIPAARSAVDRYLRLCPHPQSPDAAL--FRGVRGGALNPSAIQGVMAKARMQLGLP 246

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + T H +RHSFATHLLS GGDLR+IQ +LGH  LSTTQ YT V++      +ME+Y++ 
Sbjct: 247 ATATPHAMRHSFATHLLSAGGDLRAIQELLGHASLSTTQAYTAVDTAR----LMEVYNRA 302

Query: 318 HP 319
           HP
Sbjct: 303 HP 304


>gi|90421041|ref|ZP_01228944.1| tyrosine recombinase XerC [Aurantimonas manganoxydans SI85-9A1]
 gi|90334676|gb|EAS48453.1| tyrosine recombinase XerC [Aurantimonas manganoxydans SI85-9A1]
          Length = 319

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 136/308 (44%), Positives = 186/308 (60%), Gaps = 11/308 (3%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL E+  WL  L  ER  S  T+++YE D RQFLIFL  Y      +  +  L   ++R 
Sbjct: 13  LLDEKAAWLTILADERRSSPHTIEAYERDLRQFLIFLTDYHARPAQLGDLADLKTADLRG 72

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F++ RR    G +++ R L+G++SF+++L+++ + + +    MR  K+  SLPR L    
Sbjct: 73  FLAARRRDGAGAKTMGRGLAGVRSFIRHLERKGLASSAGAKAMRAPKQPKSLPRPLTVDD 132

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQ 191
           A+ + +           WI AR+ AIL LLYGCGLRISEALSL P + + D +  ++ + 
Sbjct: 133 AMAVTEEA--GAFAADAWIAARDVAILTLLYGCGLRISEALSL-PGDALGDATARSMPVA 189

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG K R+VPLLP+V +A  EY   CP+ L  +  L  FRG RG PL P + QR + +LR
Sbjct: 190 GKGGKTRLVPLLPAVLEAAAEYRRRCPYPLTADNAL--FRGARGGPLQPQIVQRAMARLR 247

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             LGLP S T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ YT V+       +M
Sbjct: 248 GVLGLPDSATPHALRHSFATHLLAGGGDLRTIQDLLGHASLSTTQNYTAVDQAR----LM 303

Query: 312 EIYDQTHP 319
            IY+  HP
Sbjct: 304 SIYEDAHP 311


>gi|99082221|ref|YP_614375.1| site-specific tyrosine recombinase XerC [Ruegeria sp. TM1040]
 gi|99038501|gb|ABF65113.1| phage integrase [Ruegeria sp. TM1040]
          Length = 311

 Score =  250 bits (639), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 129/313 (41%), Positives = 187/313 (59%), Gaps = 9/313 (2%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P ++S       Q WL  L    G +  TL +Y  D  +FL F++ +      +  +RQ+
Sbjct: 6   PTLISPAARDALQRWLDGLGALEGAADNTLAAYRGDVVEFLSFMSLHFGAPQGLGALRQI 65

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           +  ++RA+++  R+   G RSL R LS +K F  +L KR+    + +L+ R  K    LP
Sbjct: 66  TTADMRAWMASARSSGTGARSLARKLSAVKKFYGWLAKREGFEPTAVLSTRAPKFQKKLP 125

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R L++  A  ++D V L +  +  W+ AR+ A++ LLYGCGLRISEAL L  ++     +
Sbjct: 126 RPLDQDAARAMIDTVELQS--QKDWVSARDVAVVTLLYGCGLRISEALGLLGKDA-PLPA 182

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           TLRI+GKG K R+VP+LP+ ++A+  Y  LCP     +  LPLFRG+RG  L+  + Q  
Sbjct: 183 TLRIKGKGGKERVVPVLPAAQQAVERYLALCPHPKEAH--LPLFRGVRGGALHARMIQGV 240

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +   RR LGLP + T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ YT V++ + 
Sbjct: 241 MAGARRQLGLPATATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAH- 299

Query: 307 GDWMMEIYDQTHP 319
              +ME+Y + HP
Sbjct: 300 ---LMEVYARAHP 309


>gi|218682269|ref|ZP_03529870.1| site-specific tyrosine recombinase XerC [Rhizobium etli CIAT 894]
          Length = 248

 Score =  249 bits (637), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 121/251 (48%), Positives = 169/251 (67%), Gaps = 8/251 (3%)

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            + RAF++ RR Q  G RSL R+L+G++S L++L+K+ +   +    +R+ K+  SLP+ 
Sbjct: 4   ADFRAFLAARRKQGSGARSLGRNLAGLRSLLRHLEKKGLVNAAGAGAIRSPKQPKSLPKP 63

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L++ QA+T+V N      H+  WI AR++A++ LLYGCGLRISEAL L P ++    +TL
Sbjct: 64  LSDTQAITVVSNEA--QLHDEPWIAARDAAVMTLLYGCGLRISEALDLVPADLQKGATTL 121

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKG+K R+VPLL  V  A+ +Y  LCP DL      PLFRG RG  L P + QR ++
Sbjct: 122 RITGKGNKTRLVPLLSVVFDAVEKYRTLCPHDLE--AAEPLFRGARGGKLQPAIIQRAMQ 179

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +LR   GLP + T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ+YT V++     
Sbjct: 180 KLRSAFGLPETATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASR--- 236

Query: 309 WMMEIYDQTHP 319
            ++E+YD+ HP
Sbjct: 237 -LLEVYDRAHP 246


>gi|255264826|ref|ZP_05344168.1| site-specific tyrosine recombinase XerC [Thalassiobium sp. R2A62]
 gi|255107161|gb|EET49835.1| site-specific tyrosine recombinase XerC [Thalassiobium sp. R2A62]
          Length = 304

 Score =  249 bits (637), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 127/311 (40%), Positives = 183/311 (58%), Gaps = 9/311 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++S  L    + WL +     G S+ T ++Y+ D   FL F+  +      +  I Q+  
Sbjct: 1   MISPALRDALEGWLASTAALNGTSENTTKAYQADVAGFLAFMTVHHGGAQGLGPISQICV 60

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           +++RA+++  R + +  RSL RSLS +K+F  +  +R+    + +L+ R  K    LPR 
Sbjct: 61  SDMRAWMASERGRGVAARSLARSLSAVKTFYCWFAEREGFEPTAVLSTRAPKFQKKLPRP 120

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L E  A  ++D V L  +    W+ AR+ A++ LLYGCGLRISEAL L  +++   Q TL
Sbjct: 121 LAEDAARAMIDTVELQAAE--PWVAARDMAVMTLLYGCGLRISEALGLCGRDVPLPQ-TL 177

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKG K R+VP++P    A+  Y   CP+ +  +   PLFRG+RG  LNP   Q+   
Sbjct: 178 RILGKGGKERVVPVIPQACDAVAAYLRQCPYPVEPDA--PLFRGVRGGALNPRAIQKVTE 235

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
             R  LGLP + T H +RHSFATHLLS GGDLR+IQ +LGH  LSTTQ YT V++     
Sbjct: 236 AARLQLGLPATATPHAMRHSFATHLLSAGGDLRAIQELLGHASLSTTQTYTAVDTAR--- 292

Query: 309 WMMEIYDQTHP 319
            +ME+YD+THP
Sbjct: 293 -LMEVYDRTHP 302


>gi|146277269|ref|YP_001167428.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145555510|gb|ABP70123.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 306

 Score =  249 bits (636), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 128/301 (42%), Positives = 180/301 (59%), Gaps = 10/301 (3%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + WL +  +  G S  T+++Y  D   +L FLA +  E   +  +  + + ++RA+++  
Sbjct: 14  EAWLTHQRVIEGASPHTIRAYAADVAGWLAFLAGHLGEGYGLPALASVPHADLRAWMAHE 73

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R + +G RSL RSLS ++ F  +L +R+    + +L+ R  K    LPR L+E  A  L+
Sbjct: 74  RARGLGARSLARSLSAVRQFTGWLAEREGVDATAVLSARGPKFRRKLPRPLSEGDAKALL 133

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             V    + +  WI AR+ A++ LLYGCGLRISEAL L P         LRI GKG K R
Sbjct: 134 LTVAEDGAED--WIRARDLAVVTLLYGCGLRISEALGL-PATAHPLPEVLRILGKGSKER 190

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VP +P+ R+A+  Y  LCPFDL      PLFRG RG  LNP +  + + + R  LGLP 
Sbjct: 191 LVPAIPAAREAVARYAALCPFDLTSG---PLFRGARGGALNPRLVAKVMERARATLGLPP 247

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ+YT V+    G  +ME+Y + H
Sbjct: 248 TATPHALRHSFATHLLNAGGDLRAIQELLGHASLSTTQVYTAVD----GARLMEVYARAH 303

Query: 319 P 319
           P
Sbjct: 304 P 304


>gi|254454192|ref|ZP_05067629.1| tyrosine recombinase XerC [Octadecabacter antarcticus 238]
 gi|198268598|gb|EDY92868.1| tyrosine recombinase XerC [Octadecabacter antarcticus 238]
          Length = 301

 Score =  248 bits (634), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 129/300 (43%), Positives = 180/300 (60%), Gaps = 9/300 (3%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +WL +     G +  T+ +Y+ D   FL F+  Y  E   +  I +++ +++RA+++  R
Sbjct: 7   DWLDHQRALNGAAANTITAYQTDLLGFLNFMTTYHGEAQGLGPISRITVSDMRAWMASER 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +  RSL RSLS +KSF ++L  R+    + +L+ R+ K    LPR L    A  ++D
Sbjct: 67  GRGVAARSLARSLSAVKSFYRWLADREGFEPTAVLSTRSPKFQKKLPRPLAVDGARAMID 126

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            V L       WI AR+ A++ LLYGCGLRISEAL LTP ++    +TLRI GKG K R+
Sbjct: 127 TVELQA--REPWIAARDVAVVTLLYGCGLRISEALGLTPTDV-PLPATLRIIGKGGKERL 183

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VP++P+ R A+  Y D CP  L  +   P+FRG RG PL P   Q  +   R  LGLP +
Sbjct: 184 VPVIPAARAAVNAYLDACPHQLTAD--QPIFRGSRGGPLYPKAIQNVMASSRMQLGLPAT 241

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T H +RHSFATHLL+ GGDLRSIQ +LGH  LSTTQ YT V++      +ME+YD  HP
Sbjct: 242 ATPHAMRHSFATHLLNAGGDLRSIQELLGHASLSTTQSYTAVDTAR----LMEVYDAAHP 297


>gi|126728166|ref|ZP_01743982.1| site-specific tyrosine recombinase XerC [Sagittula stellata E-37]
 gi|126711131|gb|EBA10181.1| site-specific tyrosine recombinase XerC [Sagittula stellata E-37]
          Length = 308

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 128/300 (42%), Positives = 186/300 (62%), Gaps = 9/300 (3%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +WL + +  R  S  T+ +Y  D   F+ FL  +  E   +  + +++ +++RA+++  R
Sbjct: 15  DWLDHAKALREASDNTITAYRADVIDFIAFLTQHHAEPQGLAPLARVTTSDMRAWMAHLR 74

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
             +IG RS+ R LS +K+F ++L  R+    + +L  R  K    LPR L+E+ A  ++D
Sbjct: 75  RTEIGPRSMARKLSAVKTFYRWLADREGFEPTAVLATRAPKFQKKLPRPLSEEAARAMID 134

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            V + ++  T W  AR++A++ LLYGCGLRISEALSLT +++    S LRI GKG+K R+
Sbjct: 135 TVEIQST--TSWQGARDAAVVTLLYGCGLRISEALSLTGRHLPLTDS-LRIVGKGNKERV 191

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VP+LP  R+A+  Y  LCPF    ++ L  FRG RG PLNP +  +   Q R  LGLP +
Sbjct: 192 VPVLPVARRAVETYLSLCPFPPERDVAL--FRGARGGPLNPRLIAKVTEQARMQLGLPAT 249

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T H +RHSFATHLL  GGDLR+IQ +LGH  LSTTQ YT V+  +    +M+IYD  HP
Sbjct: 250 ATPHAMRHSFATHLLHAGGDLRAIQELLGHASLSTTQAYTAVDQVH----LMKIYDACHP 305


>gi|192288610|ref|YP_001989215.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris
           TIE-1]
 gi|192282359|gb|ACE98739.1| integrase family protein [Rhodopseudomonas palustris TIE-1]
          Length = 323

 Score =  248 bits (632), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 131/312 (41%), Positives = 188/312 (60%), Gaps = 8/312 (2%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            + +L  E   WL +L  ER LS  TL++Y  D RQFL FLA +   ++T+    +L  T
Sbjct: 16  AAADLTAEMTKWLSHLRAERRLSGKTLEAYARDVRQFLQFLAEHWGGEVTLGRFARLEAT 75

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++RAF++ RR  +I  RSL R+L+G++SF ++L++        + ++R  K   SLP+ L
Sbjct: 76  DVRAFMAARRADEIAGRSLMRALAGMRSFGRFLEREGKGRVGALASVRAPKIKKSLPKPL 135

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQST 187
               A  L D           W+  R++A++ LLYG GLRISEAL L  +++       T
Sbjct: 136 PIAAAKRLADADERAGEERETWVLIRDAAVMALLYGSGLRISEALGLKRRDVPAAGKGDT 195

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           L + GKG+K R+VP+L +V   I EY   CP+  NL    P+F G RG PL+P + Q  +
Sbjct: 196 LIVHGKGNKTRMVPVLQNVLAQIAEYAAACPY--NLPPDGPMFVGARGGPLSPRIIQLAM 253

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +LR  LGLP S T H LRHSFATHLLS GGDLR+IQ +LGH  LSTTQ+YT ++++   
Sbjct: 254 ERLRGGLGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYTGIDTER-- 311

Query: 308 DWMMEIYDQTHP 319
             ++E+Y+  HP
Sbjct: 312 --LLEVYNSAHP 321


>gi|260425750|ref|ZP_05779730.1| site-specific recombinase, phage integrase family [Citreicella sp.
           SE45]
 gi|260423690|gb|EEX16940.1| site-specific recombinase, phage integrase family [Citreicella sp.
           SE45]
          Length = 308

 Score =  248 bits (632), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 123/301 (40%), Positives = 187/301 (62%), Gaps = 9/301 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +NWL +    +G ++ T+ +Y  D  +F++FL  +  E   ++ + +++  ++RAF++  
Sbjct: 14  ENWLASARALKGAAENTITAYRADVLEFIVFLTTHHAEPQGLKPLARVTTPDMRAFMAHL 73

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R Q    RS+ R LS +KSF ++L +R+    + ++  R  K    LPR L+E  A  ++
Sbjct: 74  RGQGAAPRSMARKLSAVKSFYRWLAEREGFEPTAVIMARAPKFQKKLPRPLDESAARAMI 133

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           + V + ++    WI AR++A++ LLYGCGLRISEAL L  ++    +S LRI GKG K R
Sbjct: 134 ETVEMQSA--DSWIGARDAAVVTLLYGCGLRISEALGLRGRDWPMGES-LRITGKGGKER 190

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVP+LP  R A+  Y  LCPF+     + P+FRG RG  LNP + Q+   + R  LGLP 
Sbjct: 191 IVPVLPVARDAVGIYLQLCPFEPE--PEAPIFRGARGGALNPRLIQKVTEKARLQLGLPA 248

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + T H +RHSFATHLL+ GGDLR+IQ +LGH  LSTTQ YT V+  +    +M++Y+ +H
Sbjct: 249 TATPHAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYTAVDEVH----LMKVYEASH 304

Query: 319 P 319
           P
Sbjct: 305 P 305


>gi|294678724|ref|YP_003579339.1| tyrosine recombinase XerC [Rhodobacter capsulatus SB 1003]
 gi|294477544|gb|ADE86932.1| tyrosine recombinase XerC [Rhodobacter capsulatus SB 1003]
          Length = 307

 Score =  248 bits (632), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 122/299 (40%), Positives = 187/299 (62%), Gaps = 9/299 (3%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W+ +L    G +  TL +Y  D   FL FL  +  E + +  +  L  +++RA+++  R 
Sbjct: 16  WISHLRAIDGAASHTLTAYSSDVAGFLAFLHRHRGESLGLAQLAGLGQSDMRAWMAHERN 75

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  RSL R+LS +K+F+++L  R+    +++L+ +  K    LPR L+ + A  +++ 
Sbjct: 76  RGLSGRSLARALSAVKNFIRWLAAREGFDATHVLSAKAPKYQRKLPRPLSVEAAAEVLEQ 135

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           V +    +  WI AR+SA++ L+YGCGLR+SEAL+L   +    +  LRI+GKGDK R+V
Sbjct: 136 VEVQA--QEPWIAARDSAVMTLMYGCGLRVSEALALKGSDAPLPE-VLRIRGKGDKERLV 192

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+LP+ RKA+ +Y  LCPF ++     PLFRG RG PLNP +  + + + R  LGLP + 
Sbjct: 193 PVLPAARKAVADYLRLCPFPMSRYE--PLFRGARGGPLNPRLVAKSMERARLGLGLPATA 250

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           T H LRHSFATHLL+ GGDLR+IQ +LGH  L+TTQ+YT V+       +M++Y   HP
Sbjct: 251 TPHALRHSFATHLLAEGGDLRAIQELLGHASLATTQVYTAVDQAR----LMQVYQAAHP 305


>gi|89068699|ref|ZP_01156085.1| tyrosine recombinase [Oceanicola granulosus HTCC2516]
 gi|89045662|gb|EAR51724.1| tyrosine recombinase [Oceanicola granulosus HTCC2516]
          Length = 307

 Score =  247 bits (631), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 127/311 (40%), Positives = 184/311 (59%), Gaps = 9/311 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++S  L    + WL +    RG S+ T+ +Y  D   FL F+A +   +  +  + ++  
Sbjct: 4   LISPALTDAAEAWLAHARALRGASEKTINAYRTDVLGFLAFMAEHHGGQQGLAPLARVGV 63

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           +++RA+++  R + +  RSL R+LS +K F +++ +R+    + +L+ R+ K    LPR 
Sbjct: 64  SDMRAWMAHERGRGVSARSLARALSAVKGFYRWIAEREGFEPTAVLSTRSPKFQKKLPRP 123

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L    A  ++D V L       W+ AR+ A++ LLYGCGLRISEAL LT   +   +  +
Sbjct: 124 LAVDAAQAMIDRVELQA--REGWVAARDVAVVTLLYGCGLRISEALGLTGAAVPLPE-VV 180

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKG K R+VP++   R A+  Y  LCP  L  +  LPLFRG+RG  LNP   Q+ + 
Sbjct: 181 RIVGKGGKERVVPVIAPARDAVDAYARLCPHPLEPH--LPLFRGVRGGALNPRAIQKVME 238

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           Q R  LGLP + T H LRHSFATHLL  GGDLRSIQ +LGH  LSTTQ YT V++     
Sbjct: 239 QARLQLGLPATATPHALRHSFATHLLGAGGDLRSIQELLGHASLSTTQAYTAVDTAR--- 295

Query: 309 WMMEIYDQTHP 319
            +ME+YD+ HP
Sbjct: 296 -LMEVYDKAHP 305


>gi|316931849|ref|YP_004106831.1| integrase family protein [Rhodopseudomonas palustris DX-1]
 gi|315599563|gb|ADU42098.1| integrase family protein [Rhodopseudomonas palustris DX-1]
          Length = 323

 Score =  247 bits (630), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 131/312 (41%), Positives = 188/312 (60%), Gaps = 8/312 (2%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            + +L  E   WL +L  ER LS  TL++Y  D RQFL FLA +   ++T+    +L  T
Sbjct: 16  AAADLTAEMAKWLSHLRAERRLSGKTLEAYARDVRQFLQFLAGHWGGEVTLGRFARLEAT 75

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++RAF++ RR   I  RSL R+L+G++SF ++L++        + ++R  K   SLP+ L
Sbjct: 76  DVRAFMAARRADDIAGRSLMRALAGLRSFGRFLEREGKGRVGALASVRAPKIRKSLPKPL 135

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQST 187
               A  L D           W+  R++A++ LLYG GLRISEAL L  +++       T
Sbjct: 136 PIAAAKRLADADERAGEERETWVLIRDAAVMALLYGSGLRISEALGLKRRDVPAPGKGDT 195

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           L + GKG+K R+VP+L +V + I EY   CP+  NL    P+F G RG PL+P + Q  +
Sbjct: 196 LIVHGKGNKTRMVPVLQNVLEQIAEYAAACPY--NLPPDGPMFVGARGGPLSPRIIQLAM 253

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +LR  LGLP S T H LRHSFATHLLS GGDLR+IQ +LGH  LSTTQ+YT ++++   
Sbjct: 254 ERLRGGLGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYTGIDTER-- 311

Query: 308 DWMMEIYDQTHP 319
             ++E+Y+  HP
Sbjct: 312 --LLEVYNSAHP 321


>gi|39933259|ref|NP_945535.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris
           CGA009]
 gi|39652884|emb|CAE25626.1| putative site-specific recombinase, INTEGRASE/RECOMBINASE RIPX
           (xerC) [Rhodopseudomonas palustris CGA009]
          Length = 371

 Score =  247 bits (630), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 131/313 (41%), Positives = 188/313 (60%), Gaps = 8/313 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
             + +L  E   WL +L  ER LS  TL++Y  D RQFL FLA +   ++T+    +L  
Sbjct: 63  CAAADLTAEMTKWLSHLRAERRLSGKTLEAYARDVRQFLQFLAGHWGGEVTLGRFARLEA 122

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           T++RAF++ RR  +I  RSL R+L+G++SF ++L++        + ++R  K   SLP+ 
Sbjct: 123 TDVRAFMAARRADEIAGRSLMRALAGMRSFGRFLEREGKGRVGALASVRAPKIKKSLPKP 182

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQS 186
           L    A  L D           W+  R++A++ LLYG GLRISEAL L  +++       
Sbjct: 183 LPIAAAKRLADADERAGEERETWVLIRDAAVMALLYGSGLRISEALGLKRRDVPAPGKGD 242

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           TL + GKG+K R+VP+L +V   I EY   CP+  NL    P+F G RG PL+P + Q  
Sbjct: 243 TLIVHGKGNKTRMVPVLQNVLAQIAEYAAACPY--NLPPDGPMFVGARGGPLSPRIIQLA 300

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           + +LR  LGLP S T H LRHSFATHLLS GGDLR+IQ +LGH  LSTTQ+YT ++++  
Sbjct: 301 MERLRGGLGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYTGIDTER- 359

Query: 307 GDWMMEIYDQTHP 319
              ++E+Y+  HP
Sbjct: 360 ---LLEVYNSAHP 369


>gi|254475428|ref|ZP_05088814.1| tyrosine recombinase XerC [Ruegeria sp. R11]
 gi|214029671|gb|EEB70506.1| tyrosine recombinase XerC [Ruegeria sp. R11]
          Length = 305

 Score =  246 bits (629), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 126/301 (41%), Positives = 182/301 (60%), Gaps = 9/301 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++WL +L   R  +  TL +Y  D   FL F+  +      +  + +++  ++RA+++  
Sbjct: 12  EHWLAHLGGLRDAADNTLTAYRGDVVDFLAFMTQHFGSPQGLGALAEITTGDMRAWMAAT 71

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R    G RSL R LS +KSF  +L +R+    + +L+ R+ K    LPR L E  A  ++
Sbjct: 72  RAGGTGARSLARKLSAVKSFYTWLAERQGFEATAVLSARSPKFQKKLPRPLAEDAAKAMI 131

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           + V   ++  + W+ AR+ A++ +LYGCGLRISEAL LT  +     + LRI GKG K R
Sbjct: 132 ETVEYQST--SDWVAARDVAVVTVLYGCGLRISEALGLTGGD-APLPAVLRITGKGGKER 188

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVP+LP+ R A+  Y DLCP     N   PLFRG+RG PLN  + ++ + Q R  LGLP 
Sbjct: 189 IVPVLPAARAAVDRYLDLCPHPQETNA--PLFRGVRGGPLNASIIRKAMAQARAQLGLPA 246

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ YT V++ +    +ME+Y++ H
Sbjct: 247 TATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAH----LMEVYNRAH 302

Query: 319 P 319
           P
Sbjct: 303 P 303


>gi|163733501|ref|ZP_02140944.1| site-specific tyrosine recombinase XerC [Roseobacter litoralis Och
           149]
 gi|161393289|gb|EDQ17615.1| site-specific tyrosine recombinase XerC [Roseobacter litoralis Och
           149]
          Length = 306

 Score =  246 bits (628), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 127/301 (42%), Positives = 181/301 (60%), Gaps = 9/301 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           QNWL +    +G ++ TL +Y+ D   FL F+  +      +  +  +S T++RA++++ 
Sbjct: 13  QNWLAHQRAIKGAAENTLIAYQGDVIDFLSFITAHKGAPQGLGALADISVTDMRAWMAQT 72

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R   +  RSL R LS +K+F K+L  R+    + +L+ R  K    LPR L    A  L+
Sbjct: 73  RETGVAARSLARKLSAVKAFYKWLALREGFEPTAVLSTRAPKFQKKLPRPLAPDAARNLI 132

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D + + + H   W+ AR+ A++ LL+GCGLRISEALSL         +TLRI GKG K R
Sbjct: 133 DAIEIQSQHP--WVCARDVAVVTLLWGCGLRISEALSLA-AADAPLPATLRITGKGGKER 189

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVP+LP+ R A+  Y  +CP       + PLFR +RG PL PG  Q+ +   R  LGLP 
Sbjct: 190 IVPVLPAARDAVDAYVRMCPHPQT--AEAPLFRAVRGGPLRPGTIQKVMAAARMQLGLPA 247

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + T H +RHSFATHLL+ GGDLR+IQ +LGH  LSTTQ YT V++      +M++YD+TH
Sbjct: 248 TATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTAVDTVR----LMKVYDRTH 303

Query: 319 P 319
           P
Sbjct: 304 P 304


>gi|299135445|ref|ZP_07028635.1| tyrosine recombinase XerC [Afipia sp. 1NLS2]
 gi|298589853|gb|EFI50058.1| tyrosine recombinase XerC [Afipia sp. 1NLS2]
          Length = 327

 Score =  245 bits (625), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 128/309 (41%), Positives = 190/309 (61%), Gaps = 8/309 (2%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ++  E   WL +L+ ER LS  TL++YE D RQ L+FLA +  +  +++    +  T++R
Sbjct: 23  DIQAEAARWLAHLKSERRLSPKTLEAYERDLRQCLMFLAEHWGKPASLKAFAAIEATDVR 82

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           AF++ RR   IG RSL R+L+G++SF ++L++        +  +R  K S +LP+ L   
Sbjct: 83  AFMAARRADDIGGRSLMRALAGLRSFGRFLEREGKGKVGALSAIRAPKISKTLPKPLAVS 142

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRI 190
            A  L +  +        WI AR++A++ LLYG GLRISEAL L  ++I +      + +
Sbjct: 143 AARNLTEADIRAGEDRPPWIWARDAAVMALLYGSGLRISEALGLNRRDIPEPGRGDVITV 202

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG+K R+VP+L  V +A+ +Y   CP+   L  + P+F G RG PL+P + Q  + +L
Sbjct: 203 TGKGNKTRMVPVLQGVLEAVQDYIAQCPYP--LAPEKPVFVGARGGPLSPRIIQLTMERL 260

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           R  LGLP S T H LRHSFATHLLS GGDLR+IQ +LGH  LSTTQIYT ++++     +
Sbjct: 261 RGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDAER----L 316

Query: 311 MEIYDQTHP 319
           M++Y   HP
Sbjct: 317 MDVYQSAHP 325


>gi|221640000|ref|YP_002526262.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides
           KD131]
 gi|221160781|gb|ACM01761.1| Phage integrase family protein [Rhodobacter sphaeroides KD131]
          Length = 306

 Score =  244 bits (624), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 132/301 (43%), Positives = 180/301 (59%), Gaps = 10/301 (3%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + WL +     G S  T+++Y  D   +L FLA +  E   ++ +  + + ++RA+++  
Sbjct: 14  EAWLTHQRAIEGASAHTIRAYTADVTGWLAFLAGHLGEGYGLKRLASVPHADLRAWMAHE 73

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R + +G RSL RSLS ++ F  +L +R+    + +L+ R  K    LPR L+E  A  L+
Sbjct: 74  RARGLGARSLARSLSAVRQFTGWLAEREGVDATAVLSARGPKFRRKLPRPLSEADAKALL 133

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             V    + +  WI AR+ A++ LLYGCGLRISEAL L P         LRI GKGDK R
Sbjct: 134 STVAEDAAED--WIRARDLAVVTLLYGCGLRISEALGL-PGTAHPLPEVLRITGKGDKER 190

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VP LP  R A+  Y  LCPFDL   +   LFRG RG PLNP +  R + + R  LGLP 
Sbjct: 191 LVPSLPVARAAVARYAALCPFDLGSGV---LFRGARGGPLNPRLVARTMERARATLGLPP 247

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + T H LRHSFATHLL+ GGDLRSIQ +LGH  LSTTQ+YT V+    G  +ME+Y + H
Sbjct: 248 TATPHALRHSFATHLLNAGGDLRSIQELLGHASLSTTQVYTAVD----GARLMEVYAKAH 303

Query: 319 P 319
           P
Sbjct: 304 P 304


>gi|126733327|ref|ZP_01749074.1| tyrosine recombinase [Roseobacter sp. CCS2]
 gi|126716193|gb|EBA13057.1| tyrosine recombinase [Roseobacter sp. CCS2]
          Length = 304

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 124/299 (41%), Positives = 183/299 (61%), Gaps = 9/299 (3%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL       G ++ TL++Y+ D   FL F+  Y  E   +  I +++  ++RA+++  R 
Sbjct: 13  WLAGQRALAGTAENTLKAYQTDVMGFLAFMTQYNGESQGLAPIARVTVRDMRAWMAHERG 72

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + IG RSL RSLS +KSF ++L +R+    + +L+ R  K    LPR L    A  ++D 
Sbjct: 73  RGIGARSLARSLSAVKSFYRWLAEREGFEPTAVLSTRAPKFQRKLPRPLEVNAASAMIDT 132

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           V L  +    W+ AR++A++ LLYGCGLRISEAL LT  ++   +  LRI GKG K RIV
Sbjct: 133 VELQANE--PWVAARDAAVVTLLYGCGLRISEALGLTSVDVPLPE-VLRIVGKGGKERIV 189

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P++   R+A+  Y  LCP+ +  +   P+FR +RG  L+P   Q+ + Q R  LGLP + 
Sbjct: 190 PVIAEAREAVATYVRLCPYPVAQD--QPIFRAVRGGILSPRAIQKVMEQARLQLGLPATA 247

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           T H +RHSFATHLL+ GGDLR+IQ +LGH  LSTTQ YT V++ +    +M +Y++ HP
Sbjct: 248 TPHAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYTAVDAAH----LMSVYEKAHP 302


>gi|77464133|ref|YP_353637.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides
           2.4.1]
 gi|126462976|ref|YP_001044090.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides
           ATCC 17029]
 gi|77388551|gb|ABA79736.1| putative site-specific recombinase [Rhodobacter sphaeroides 2.4.1]
 gi|126104640|gb|ABN77318.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 306

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 132/301 (43%), Positives = 180/301 (59%), Gaps = 10/301 (3%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + WL +     G S  T+++Y  D   +L FLA +  E   ++ +  + + ++RA+++  
Sbjct: 14  EAWLTHQRAIEGASAHTIRAYTADVTGWLAFLAGHLGEGYGLKRLASVPHADLRAWMAHE 73

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R + +G RSL RSLS ++ F  +L +R+    + +L+ R  K    LPR L+E  A  L+
Sbjct: 74  RARGLGARSLARSLSAVRQFTGWLAEREGVDATAVLSARGPKFRRKLPRPLSEADAKALL 133

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             V    + +  WI AR+ A++ LLYGCGLRISEAL L P         LRI GKGDK R
Sbjct: 134 STVAEDAAED--WIRARDLAVVTLLYGCGLRISEALGL-PGTAHPLPEVLRITGKGDKER 190

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VP LP  R A+  Y  LCPFDL   +   LFRG RG PLNP +  R + + R  LGLP 
Sbjct: 191 LVPSLPVARAAVARYAALCPFDLASGV---LFRGARGGPLNPRLVARTMERARATLGLPP 247

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + T H LRHSFATHLL+ GGDLRSIQ +LGH  LSTTQ+YT V+    G  +ME+Y + H
Sbjct: 248 TATPHALRHSFATHLLNAGGDLRSIQELLGHASLSTTQVYTAVD----GARLMEVYAKAH 303

Query: 319 P 319
           P
Sbjct: 304 P 304


>gi|209883739|ref|YP_002287596.1| tyrosine recombinase XerC [Oligotropha carboxidovorans OM5]
 gi|209871935|gb|ACI91731.1| tyrosine recombinase XerC [Oligotropha carboxidovorans OM5]
          Length = 355

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 129/316 (40%), Positives = 194/316 (61%), Gaps = 10/316 (3%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP    F+   E   WL +L+ ER LS  TL++YE D RQ + FLA +  + +++ +   
Sbjct: 46  LPATGDFQ--AEVARWLAHLKSERRLSPKTLEAYERDLRQCIGFLAEHWGKPVSLASFAG 103

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +  T++RAF++ RR+  +  RSL R+L+G++SF ++L++        +  +R  K S SL
Sbjct: 104 IEATDVRAFMASRRSHDVAGRSLMRALAGLRSFGRFLEREGKGKVGALSAIRAPKISKSL 163

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD- 184
           P+ L    A  L +  +        WI AR++A++ LLYG GLRISEAL L  ++I +  
Sbjct: 164 PKPLAVSAARHLTEAEIRAGEDRPPWIWARDAAVMALLYGSGLRISEALGLARRDIPEPG 223

Query: 185 -QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
               + + GKG+K R+VP+L +V  A+ +Y   CP++L+ +   P+F G RG PL+P + 
Sbjct: 224 RGDVITVTGKGNKTRMVPVLQAVLDAVQDYIAQCPYELSPD--KPVFVGARGGPLSPRII 281

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           Q  + +LR  LGLP S T H LRHSFATHLLS GGDLR+IQ +LGH  LSTTQIYT +++
Sbjct: 282 QLTMERLRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDA 341

Query: 304 KNGGDWMMEIYDQTHP 319
           +     +M++Y   HP
Sbjct: 342 ER----LMDVYQSAHP 353


>gi|13473627|ref|NP_105195.1| site-specific tyrosine recombinase XerC [Mesorhizobium loti
           MAFF303099]
 gi|34222994|sp|Q98ED9|XERC_RHILO RecName: Full=Tyrosine recombinase xerC
 gi|14024377|dbj|BAB50981.1| site-specific recombinase, integrase/recombinase RipX; XerC
           [Mesorhizobium loti MAFF303099]
          Length = 312

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 139/308 (45%), Positives = 190/308 (61%), Gaps = 9/308 (2%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L   R++WL+ L  ER LS  T+++YE DTRQFL FL  +      I  I  L   ++R
Sbjct: 11  DLQAARESWLKMLARERRLSPETVEAYERDTRQFLHFLTGHCGGSPGISDIANLRPADLR 70

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F++ RR    G R+L R L+GI+S L++L++R +   +    +R  ++  SLP+ L   
Sbjct: 71  GFLAARRNAGAGARTLGRGLAGIRSLLRFLERRGLVNAAGAAALRAPRQPKSLPKPLTAS 130

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-LRIQ 191
            A  +V   +     E  WI ARN+A+L LLYG GLRISEAL L   ++  +  T LR+ 
Sbjct: 131 DAKQVVS--VEGQLAEEPWIAARNAAVLTLLYGSGLRISEALGLAGADLASETDTVLRVT 188

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG K R+VP+LP   +AI EY  LCP+  +L+ +  LFRG RG PLNP + QR + +LR
Sbjct: 189 GKGGKTRLVPVLPVALRAIAEYRRLCPY--HLDPKGLLFRGARGGPLNPAIIQRDMAKLR 246

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             L LP + T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQIYT V++      ++
Sbjct: 247 SALNLPDTATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQIYTGVDTAR----LL 302

Query: 312 EIYDQTHP 319
           EIY+  HP
Sbjct: 303 EIYESAHP 310


>gi|114764172|ref|ZP_01443410.1| tyrosine recombinase [Pelagibaca bermudensis HTCC2601]
 gi|114543324|gb|EAU46340.1| tyrosine recombinase [Roseovarius sp. HTCC2601]
          Length = 308

 Score =  243 bits (621), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 124/301 (41%), Positives = 185/301 (61%), Gaps = 9/301 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++WL      +G S+ T+ +Y  D  +F++FL  +  E   +  + +++  ++RAF++  
Sbjct: 14  ESWLTAARALKGNSENTITAYRADVLEFIVFLTSHHAEPQGLAPLARVTTPDMRAFLAHL 73

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R Q +G R++ R LS +KSF ++L + +    + ++  R  K    LPR L E  A  ++
Sbjct: 74  RGQGVGSRTMARKLSAVKSFYRWLAELEGFEPTAVMMARAPKFQKKLPRPLAEDAAKAMI 133

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D V +  +    WI AR++A++ LLYGCGLRISEAL L  +++   +S LRI GKG K R
Sbjct: 134 DTVEMQAAD--SWIGARDAAVVTLLYGCGLRISEALGLRGRDLPLGES-LRIVGKGGKER 190

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVP+LP  R+A+  Y  LCP+D   +   P+FRG RG  LNP + Q+     R  LGLP 
Sbjct: 191 IVPVLPIARRALDTYLRLCPYDPEPDA--PVFRGKRGGALNPRLIQKVTEAARLQLGLPA 248

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + T H +RHSFATHLL+ GGDLR+IQ +LGH  LSTTQ YT+V+  +    +M++Y  TH
Sbjct: 249 TATPHAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYTSVDEVH----LMKVYAATH 304

Query: 319 P 319
           P
Sbjct: 305 P 305


>gi|259417214|ref|ZP_05741133.1| site-specific tyrosine recombinase XerC [Silicibacter sp.
           TrichCH4B]
 gi|259346120|gb|EEW57934.1| site-specific tyrosine recombinase XerC [Silicibacter sp.
           TrichCH4B]
          Length = 311

 Score =  243 bits (621), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 127/313 (40%), Positives = 185/313 (59%), Gaps = 9/313 (2%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P ++S       Q WL  L    G +  T  +Y  D   FL F++ +      +  + Q+
Sbjct: 6   PTLISPAARDALQIWLDGLGALEGAADNTRTAYRGDVVDFLAFMSLHFGGPQGLGALSQI 65

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           +  ++RA+++  R    G RSL R LS +K F  +L KR+    + +L+ R+ K    LP
Sbjct: 66  TTADMRAWMASSRNAGTGARSLARKLSAVKKFYGWLAKREGFEPTAVLSTRSPKFQKKLP 125

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R L++  A  ++D V L +  +  W+ AR+ A++ LLYGCGLRISEAL L  ++     +
Sbjct: 126 RPLDKDAARAMIDTVELQSQQD--WVAARDVAVVTLLYGCGLRISEALGLLGKDA-PLPA 182

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           TLRI+GKG K RIVP+LP+ ++A+  Y  LCP     +  LPLFRG+RG  L+  + Q  
Sbjct: 183 TLRIKGKGGKERIVPVLPAAQQAVSRYLKLCPHPQEAS--LPLFRGVRGGGLHARMIQGV 240

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +   RR LGLP + T H +RHSFATHLL  GGDLR+IQ +LGH  LSTTQ YT V++ + 
Sbjct: 241 VADARRQLGLPATATPHAMRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAH- 299

Query: 307 GDWMMEIYDQTHP 319
              +ME+Y ++HP
Sbjct: 300 ---LMEVYARSHP 309


>gi|56697962|ref|YP_168333.1| site-specific tyrosine recombinase XerC [Ruegeria pomeroyi DSS-3]
 gi|56679699|gb|AAV96365.1| tyrosine recombinase XerC [Ruegeria pomeroyi DSS-3]
          Length = 306

 Score =  243 bits (619), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 126/301 (41%), Positives = 182/301 (60%), Gaps = 9/301 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q WL       G ++ T+ +Y  D  +F+ F+  +      +  + ++   ++RA++++ 
Sbjct: 13  QLWLDTQRALAGRAENTITAYRTDVVEFMSFMTLHFGATQGLAPLARIGVPDMRAWMAQM 72

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R   IG RSL R LS +KSF ++L +R+    + +L+ R  K    LPR L E  A  ++
Sbjct: 73  RADGIGARSLARKLSAVKSFYRWLAEREGFEPTAVLSTRAPKFQRKLPRPLAEDAARAMI 132

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D V L +S    WI AR+ A++ LLYGCGLRISEALSLT        +TLRI+GKG K R
Sbjct: 133 DTVELQSSK--PWIAARDMAVVTLLYGCGLRISEALSLT-GRAAPLPATLRIRGKGGKER 189

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VP++P  R A+  Y  LCP+ +    + PLFRG RG PLN    Q  + + R  LGLP 
Sbjct: 190 LVPVIPVARAAVDTYLRLCPWPVE--PETPLFRGARGGPLNARSIQAVMAKARMQLGLPA 247

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + T H +RHSFATHLL  GGDLR+IQ +LGH  LSTTQ YT V++ +    +M++Y+++H
Sbjct: 248 TATPHAMRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAH----LMDVYNRSH 303

Query: 319 P 319
           P
Sbjct: 304 P 304


>gi|254440821|ref|ZP_05054314.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198250899|gb|EDY75214.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 319

 Score =  243 bits (619), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 125/311 (40%), Positives = 184/311 (59%), Gaps = 9/311 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++S  +     +WL +     G +  T+ +Y+ D   FL F+  Y      +  I +++ 
Sbjct: 1   MISPAMSSALGDWLDHKRALNGAASNTITAYQTDLLGFLNFMTSYYSGAQGLGPISRITV 60

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           +++RA+++  R++ +  RSL RSLS +KSF ++L  R+    + +L+ R+ K    LPR 
Sbjct: 61  SDMRAWMASERSRGVAARSLARSLSAVKSFYRWLADREGFEPTAVLSTRSPKFQKKLPRP 120

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L    A  ++D V L       WI AR+ A++ LLYGCGLRISEAL L P ++    +TL
Sbjct: 121 LAVDAARAMIDTVQLQAGEP--WIAARDMAVVTLLYGCGLRISEALGLIPADV-PLPATL 177

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKG K R+VP++P+ R A+  Y + CP  ++ +   P+FRG RG PL P   Q  + 
Sbjct: 178 RIIGKGGKERLVPVIPAARTAVNAYLEACPHPMDAD--QPIFRGSRGGPLYPRAIQIVMA 235

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
             R  LGLP + T H +RHSFATHLL+ GGDLRSIQ +LGH  LSTTQ YT V++     
Sbjct: 236 NARMQLGLPATATPHAMRHSFATHLLNAGGDLRSIQELLGHASLSTTQAYTAVDTAR--- 292

Query: 309 WMMEIYDQTHP 319
            +M++YD  HP
Sbjct: 293 -LMKVYDAAHP 302


>gi|27375557|ref|NP_767086.1| site-specific tyrosine recombinase XerC [Bradyrhizobium japonicum
           USDA 110]
 gi|34222842|sp|Q89X68|XERC_BRAJA RecName: Full=Tyrosine recombinase xerC
 gi|27348694|dbj|BAC45711.1| xerC [Bradyrhizobium japonicum USDA 110]
          Length = 321

 Score =  242 bits (617), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 130/308 (42%), Positives = 185/308 (60%), Gaps = 8/308 (2%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +E   WL +L  ER LS  TL++Y  D RQ L FL  +  E++T++    L  T++RA
Sbjct: 18  IAQEMTRWLSHLGAERRLSPKTLEAYGRDLRQCLDFLCNHWGERVTLKRFAALEATDVRA 77

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F++ RR   I  RSL R+L+G++SF ++L++        +  +R  K + SLP+ L    
Sbjct: 78  FMAMRRADDIAGRSLMRALAGLRSFGRFLEREGKGKVGALSAIRAPKVAKSLPKPLPMAS 137

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQ 191
           A  L D           WI AR++A++ LLYG GLRISEAL L  + +    +   L + 
Sbjct: 138 AKRLADADERAGEERETWILARDAAVMALLYGSGLRISEALGLKRREVPKPGEGDVLVVT 197

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG+K R+VP+L +V   + EY  +CP+ L    + P+F G RG PL+P + Q  + +LR
Sbjct: 198 GKGNKTRMVPVLQNVLALVQEYVSMCPYPLP--AEGPIFVGARGGPLSPRIIQLAMERLR 255

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             LGLP S T H LRHSFATHLLS GGDLR+IQ +LGH  LSTTQIYT ++S+     ++
Sbjct: 256 GALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHSSLSTTQIYTGIDSER----LL 311

Query: 312 EIYDQTHP 319
           E+Y   HP
Sbjct: 312 EVYASAHP 319


>gi|83950126|ref|ZP_00958859.1| tyrosine recombinase [Roseovarius nubinhibens ISM]
 gi|83838025|gb|EAP77321.1| tyrosine recombinase [Roseovarius nubinhibens ISM]
          Length = 305

 Score =  241 bits (614), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 128/302 (42%), Positives = 197/302 (65%), Gaps = 10/302 (3%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q WL      +G S  T+++Y  D  +FL F++ +   +  I  + ++S T++R+++++ 
Sbjct: 11  QGWLDMSRALKGQSDNTIEAYGRDVAEFLTFMSLHLGGEAGIAALGRISVTDMRSWMAQM 70

Query: 79  RTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R+  ++G RSL R LS +KSF+++L +R+    + +L+MR+ K +  LPR L+ + A  +
Sbjct: 71  RSGGEVGPRSLARKLSAVKSFIRWLAEREGFDPTAVLSMRSPKFTRKLPRPLSAEHARDV 130

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++     +S    WI +R+ A++ LLYGCGLRISEALSLT +++   +  LRI+GKG K 
Sbjct: 131 IETAGQQSS--APWIGSRDMAVITLLYGCGLRISEALSLTGESLPLGE-MLRIRGKGGKE 187

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VP++ + R A+ EY  LCP+ L+     PLFRG RG PL+P + Q+ ++Q+R  LGLP
Sbjct: 188 RLVPVIGAARAAVAEYAKLCPYPLDEGA--PLFRGARGGPLSPRIVQKVVQQVRMQLGLP 245

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            S T H +RHSFATHLL+ GGDLR+IQ +LGH  LSTTQ YT V++      ++EIY   
Sbjct: 246 ASATPHAMRHSFATHLLNAGGDLRTIQELLGHASLSTTQAYTAVDTAR----LLEIYRAA 301

Query: 318 HP 319
           HP
Sbjct: 302 HP 303


>gi|85713711|ref|ZP_01044701.1| phage integrase [Nitrobacter sp. Nb-311A]
 gi|85699615|gb|EAQ37482.1| phage integrase [Nitrobacter sp. Nb-311A]
          Length = 322

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 129/315 (40%), Positives = 186/315 (59%), Gaps = 8/315 (2%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P   + ++ ++   WL +L  ER LS  TL++Y  D RQ L+FL  +  E +T++    L
Sbjct: 12  PACAASDVGQQIARWLTHLRAERRLSAKTLEAYARDVRQCLMFLGQHWGELVTLERFAAL 71

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
              +IRAF++ RR + IG RSL RSL+G++SF ++L++  +     +  +R  K   SLP
Sbjct: 72  EPGDIRAFMAARRAEDIGGRSLMRSLAGLRSFARFLEREGLGKVGALGAIRAPKVGKSLP 131

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DD 184
           + +    A    D           WI AR++A++ LLYG GLRISEAL L  +++     
Sbjct: 132 KPIQMSAAKRFADASERAGEDREPWIWARDAAVMALLYGSGLRISEALGLKRRDVPLPGA 191

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
              L + GKG+K R+VP+L +V   I EY  +CP  L+ +   P+F G RG PL   + Q
Sbjct: 192 GDVLVVTGKGNKTRMVPVLHNVLALIHEYVAMCPHSLSPDG--PIFVGARGGPLRARIIQ 249

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             + ++R  LGLP S T H LRHSFATHLLS GGDLR+IQ +LGH  LSTTQIYT ++S+
Sbjct: 250 LVMARMRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDSE 309

Query: 305 NGGDWMMEIYDQTHP 319
                ++E+Y   HP
Sbjct: 310 R----LLEVYRTAHP 320


>gi|92116157|ref|YP_575886.1| site-specific tyrosine recombinase XerC [Nitrobacter hamburgensis
           X14]
 gi|91799051|gb|ABE61426.1| tyrosine recombinase XerC subunit [Nitrobacter hamburgensis X14]
          Length = 300

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 128/303 (42%), Positives = 182/303 (60%), Gaps = 12/303 (3%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL +L  ER LS  T ++Y  D RQ L+FL+ +  E +T++    L  +++RAF++ RR 
Sbjct: 4   WLSHLRAERRLSPKTCEAYARDARQCLMFLSQHWGELVTLKRFAALEASDVRAFMAARRA 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             IG RSL R+L+G++SF ++L++  +     +  +R  K   SLP+ +    A    D 
Sbjct: 64  DDIGGRSLMRALAGLRSFARFLEREGLGKVGALSAIRAPKVGKSLPKPIQMSAAKRFADA 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL----TPQNIMDDQSTLRIQGKGDK 196
                     WI AR++A++ LLYG GLRISEAL L     PQ    D   L + GKG+K
Sbjct: 124 SERAGEDREPWIWARDAAVMALLYGSGLRISEALGLKRRDVPQPGAGD--VLVVTGKGNK 181

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+VP+L +V   + EY  +CP   +L  + P+F G RG PL+P + Q  + ++R  LGL
Sbjct: 182 TRMVPVLQNVLALVHEYVAVCPH--SLPPEGPIFVGARGGPLSPRIIQLTMARMRGALGL 239

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           P S T H LRHSFATHLLS GGDLR+IQ +LGH  LSTTQIYT ++S+     ++E+Y  
Sbjct: 240 PDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDSER----LLEVYKT 295

Query: 317 THP 319
            HP
Sbjct: 296 AHP 298


>gi|149201080|ref|ZP_01878055.1| site-specific tyrosine recombinase XerC [Roseovarius sp. TM1035]
 gi|149145413|gb|EDM33439.1| site-specific tyrosine recombinase XerC [Roseovarius sp. TM1035]
          Length = 306

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 124/300 (41%), Positives = 183/300 (61%), Gaps = 9/300 (3%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            WL   +  +G +  T+ +Y  D   FL F+  +  E   +  + +++ +++RA+++  R
Sbjct: 12  TWLATQKALKGAAANTIDAYARDVGDFLRFMTLHNGETQGLGALSRITTSDMRAWMAHTR 71

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +G RSL R LS +KSF ++L +R+    + +L +R+ K    LPR L+ + A  +++
Sbjct: 72  GGDVGPRSLARKLSAVKSFYRWLSEREGFEPTAVLAIRSPKFQRKLPRPLSPEAASDMIN 131

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              L     T WI AR+ A++ LLYGCGLRISEALSLT  ++   Q  LRI GKG K R+
Sbjct: 132 T--LDAQSLTPWIAARDQAVVTLLYGCGLRISEALSLTGADLPLGQ-VLRIIGKGGKERL 188

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VP++   R A+ +Y  LCP+D+  N   PLF G RG  L+P + Q+ + Q R  LGLP +
Sbjct: 189 VPVIEPARAAVAQYARLCPYDIPRNG--PLFLGARGGALSPRLIQKVMEQARAQLGLPAT 246

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T H +RHSFATHLL+ GGDLR+IQ +LGH  LSTTQ YT V++      +ME+Y + HP
Sbjct: 247 ATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTGVDTAR----LMEVYARAHP 302


>gi|83943902|ref|ZP_00956359.1| tyrosine recombinase [Sulfitobacter sp. EE-36]
 gi|83845149|gb|EAP83029.1| tyrosine recombinase [Sulfitobacter sp. EE-36]
          Length = 315

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 119/301 (39%), Positives = 183/301 (60%), Gaps = 9/301 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q+WL +    +G ++ T+ +Y+ D   FL F+  +  +   +  + Q++ +++RA++++ 
Sbjct: 18  QSWLDHQRALKGAAENTITAYQGDLVDFLAFMTLHKGDSQGLGALSQITISDMRAWMAQT 77

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R+  +G RS+ R LS +K+F ++L +R+    + +L+ R+ K    LPR L    A  ++
Sbjct: 78  RSGDVGPRSMARKLSAVKAFYRWLAEREGFEPTAVLSTRSPKFPKKLPRPLAIDAAQAMI 137

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D+V + + H   W+ AR+ A+L LL+GCGLRISEAL L   +    +  LRI GKG K R
Sbjct: 138 DSVEMQSRH--AWVAARDVAVLTLLWGCGLRISEALGLKGADAPLPE-VLRIIGKGGKER 194

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VP+LP+ R A+  Y  +CPF    +   PLFR +RG PL      + +   R  LGLP 
Sbjct: 195 VVPVLPAARDAVDAYLRVCPFGKERDA--PLFRAMRGGPLAARAISQVMADARMQLGLPA 252

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           S T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ YT V++      +M++Y++ H
Sbjct: 253 SATPHALRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYTAVDTAR----LMDVYNRAH 308

Query: 319 P 319
           P
Sbjct: 309 P 309


>gi|84501636|ref|ZP_00999808.1| tyrosine recombinase [Oceanicola batsensis HTCC2597]
 gi|84390257|gb|EAQ02816.1| tyrosine recombinase [Oceanicola batsensis HTCC2597]
          Length = 310

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 123/305 (40%), Positives = 188/305 (61%), Gaps = 9/305 (2%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +WL  ++  RG S+ T+ +Y  D   +L F+  +      I  + +++ +++RA++++ R
Sbjct: 15  DWLSGMKSLRGASEATIGAYRRDLVDYLSFMTEHLGGPQGIAALGRVTTSDMRAWMARER 74

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +G RSL R LS +K+F ++L +R+    + +L+ R  +   SLPR L E  A  +++
Sbjct: 75  GAGLGARSLARKLSAVKTFYRWLAEREGLEVTPVLSARAPRYQRSLPRPLAEDAARAMIE 134

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            V   +S    W+ AR++A++ LLYGCGLRISEALSLT  ++    S LRI+GKG K RI
Sbjct: 135 TV--GSSDTRPWVAARDAAVVTLLYGCGLRISEALSLTVDDLPLGDS-LRIRGKGGKERI 191

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPL+   R+A+  Y ++ P  +      PLFR IRG  L+    Q+ + + R  LGLP +
Sbjct: 192 VPLIAPARQAVEAYLEIMPHPVTSGA--PLFRAIRGGALSARTVQKSMERARMGLGLPAT 249

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T H +RHSFATHLLS GGDLRSIQ +LGH  LSTTQ+YT V++      +ME+Y+ +HP
Sbjct: 250 ATPHAMRHSFATHLLSAGGDLRSIQDLLGHASLSTTQVYTGVDTAR----LMEVYEASHP 305

Query: 320 SITQK 324
              ++
Sbjct: 306 RAARR 310


>gi|91975033|ref|YP_567692.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris
           BisB5]
 gi|91681489|gb|ABE37791.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris
           BisB5]
          Length = 329

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 130/312 (41%), Positives = 187/312 (59%), Gaps = 8/312 (2%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            S +L  E   WL +L  ER LS  TL++Y  D RQFLIFLA +    +T+    +L  T
Sbjct: 22  ASADLNAEFTRWLSHLRAERRLSGKTLEAYARDLRQFLIFLAGHWGGVVTLGRFARLEAT 81

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++RAF++ RR   I  RSL R+L+G++SF ++L++    +   + ++R  K   SLP+ +
Sbjct: 82  DVRAFMAARRGDAIAGRSLMRALAGLRSFGRFLEREGKGSVGALSSVRAPKIKKSLPKPI 141

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQST 187
               A  L D           WI  R++A++ LLYG GLRISEAL L  +++       T
Sbjct: 142 QIAAAKRLADADERAGEDRETWILVRDAAVMALLYGSGLRISEALGLRRRDVPAPGKGDT 201

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           L + GKG+K R+VP+L +V   I +Y   CP  L  +   P+F G RG PL+P + Q  +
Sbjct: 202 LIVLGKGNKTRMVPVLQNVLAQIADYASACPHPLPPDG--PMFVGARGGPLSPRIIQLAM 259

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +LR  LGLP S T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ+YT ++++   
Sbjct: 260 ERLRGSLGLPDSATPHALRHSFATHLLTRGGDLRAIQELLGHASLSTTQVYTGIDTER-- 317

Query: 308 DWMMEIYDQTHP 319
             ++E+Y+  HP
Sbjct: 318 --LLEVYNSAHP 327


>gi|218532541|ref|YP_002423357.1| tyrosine recombinase XerC [Methylobacterium chloromethanicum CM4]
 gi|218524844|gb|ACK85429.1| tyrosine recombinase XerC [Methylobacterium chloromethanicum CM4]
          Length = 365

 Score =  239 bits (610), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 126/302 (41%), Positives = 182/302 (60%), Gaps = 8/302 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + W + L  ER ++  T+++YE D RQFLI  A  +    TI  +  L   ++RAF++ R
Sbjct: 28  RGWREALARERRMAANTVEAYERDLRQFLIHRAARSGTP-TIAGLIALKPRDLRAFMAAR 86

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R + IG RSL R L+G++SF ++L++    + + +  +R+ K    LPR L    AL + 
Sbjct: 87  RAEGIGGRSLMRMLAGLRSFARFLEREGHGSVAALGAVRSPKVERRLPRPLPISAALAMT 146

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKI 197
                       W+ AR++A++ LLYG GLRISEAL LT ++  M     +R+ GKG K+
Sbjct: 147 APETRPDDDRAPWVLARDAAVIALLYGSGLRISEALGLTARDAPMPGIDEVRVTGKGGKV 206

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R VP+LP+V +A+  Y  LCP    L+ + PLF G++G PL+P V Q  +  LR  LGLP
Sbjct: 207 RAVPVLPAVAEAVAAYLSLCPH--PLDPEGPLFVGVKGGPLSPRVVQYAVSALRGALGLP 264

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            S T H LRHSFATHLL+  G+LR+IQ +LGH  LSTTQIYT V++      +M  ++  
Sbjct: 265 ESATPHALRHSFATHLLARRGELRAIQELLGHASLSTTQIYTKVDAAR----LMSAFEDA 320

Query: 318 HP 319
           HP
Sbjct: 321 HP 322


>gi|254563619|ref|YP_003070714.1| ptyrosine recombinase xerC, integrase/recombinase Ripx
           [Methylobacterium extorquens DM4]
 gi|254270897|emb|CAX26902.1| ptyrosine recombinase xerC, integrase/recombinase Ripx (xerC)
           [Methylobacterium extorquens DM4]
          Length = 365

 Score =  239 bits (610), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 126/302 (41%), Positives = 182/302 (60%), Gaps = 8/302 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + W + L  ER ++  T+++YE D RQFLI  A  +    TI  +  L   ++RAF++ R
Sbjct: 28  RGWREALARERRMAANTVEAYERDLRQFLIHRAARSGTP-TIAGLIALKPRDLRAFMAAR 86

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R + IG RSL R L+G++SF ++L++    + + +  +R+ K    LPR L    AL + 
Sbjct: 87  RAEGIGGRSLMRMLAGLRSFARFLEREGHGSVAALGAVRSPKVERRLPRPLPISAALAMT 146

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKI 197
                       W+ AR++A++ LLYG GLRISEAL LT ++  M     +R+ GKG K+
Sbjct: 147 APETRPDDDRAPWVLARDAAVIALLYGSGLRISEALGLTARDAPMPGIDEVRVTGKGGKV 206

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R VP+LP+V +A+  Y  LCP    L+ + PLF G++G PL+P V Q  +  LR  LGLP
Sbjct: 207 RAVPVLPAVAEAVAAYLSLCPH--PLDPEGPLFVGVKGGPLSPRVVQYAVSALRGALGLP 264

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            S T H LRHSFATHLL+  G+LR+IQ +LGH  LSTTQIYT V++      +M  ++  
Sbjct: 265 ESATPHALRHSFATHLLARRGELRAIQELLGHASLSTTQIYTKVDAAR----LMSAFEDA 320

Query: 318 HP 319
           HP
Sbjct: 321 HP 322


>gi|86139170|ref|ZP_01057740.1| tyrosine recombinase [Roseobacter sp. MED193]
 gi|85824014|gb|EAQ44219.1| tyrosine recombinase [Roseobacter sp. MED193]
          Length = 312

 Score =  239 bits (610), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 127/301 (42%), Positives = 184/301 (61%), Gaps = 9/301 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q WLQ L    G S  T+ +Y+ D   FL F+  ++     +  + +++ +++R+++++ 
Sbjct: 19  QLWLQGLRALDGASDNTINAYQGDISSFLAFMTQHSGAPQGLGALARITTSDMRSWMAQE 78

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R    G RSL R LS +KSF ++L +R+    + +L  R  K    LPR L+E  A  ++
Sbjct: 79  RNAGTGARSLARRLSAVKSFYRWLAEREGFELTAVLAARAPKFQKKLPRPLDEDAARAVI 138

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           + V L ++  T WI AR+ A++ LLYGCGLRISEAL+LT +      S+LRI GKG K R
Sbjct: 139 ETVELQSN--TDWIAARDVAVVTLLYGCGLRISEALALTGKT-APLPSSLRILGKGGKER 195

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VP++ + R+A+  Y  L P+    +   PLFRG RG  LNP   Q  + Q R  LGLP 
Sbjct: 196 LVPVIAAAREAVARYIALSPYPNEADG--PLFRGARGGALNPRQIQGAMAQARAQLGLPA 253

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           S T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ YT V++ +    +M +Y+++H
Sbjct: 254 SATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAH----LMAVYNRSH 309

Query: 319 P 319
           P
Sbjct: 310 P 310


>gi|86747397|ref|YP_483893.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris
           HaA2]
 gi|86570425|gb|ABD04982.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris HaA2]
          Length = 351

 Score =  239 bits (609), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 131/317 (41%), Positives = 188/317 (59%), Gaps = 9/317 (2%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           +LP   + +L  E   WL +L  ER LS  TL++Y  D RQFL FLA +   ++T+    
Sbjct: 40  DLP-CAAADLNAEFTRWLSHLRAERRLSGKTLEAYARDLRQFLFFLAGHWGGEVTLGRFA 98

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           +L  T++RAF++ RR   I  RSL R+L+G++SF ++L++    +   +  +R  K   S
Sbjct: 99  RLETTDVRAFMAARRGDAIAGRSLMRALAGLRSFGRFLEREGKGSVGALSAVRAPKIKKS 158

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-- 182
           LP+ +    A  L D           W+  R++A++ LLYG GLRISEAL L  +++   
Sbjct: 159 LPKPIQIAAAKRLADADERAGEDRETWVLVRDAAVMALLYGSGLRISEALGLKRRDVPAP 218

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
               TL + GKG+K R+VP+L +V   I +Y   CP  L  +   P+F G RG PL+P +
Sbjct: 219 GKGDTLIVLGKGNKTRMVPVLDAVLAQIADYAKACPHPLPPDG--PMFVGARGGPLSPRI 276

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            Q  + +LR  LGLP S T H LRHSFATHLLS GGDLR+IQ +LGH  LSTTQIYT ++
Sbjct: 277 IQLAMERLRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGID 336

Query: 303 SKNGGDWMMEIYDQTHP 319
           ++     ++E+Y   HP
Sbjct: 337 TER----LLEVYASAHP 349


>gi|83954474|ref|ZP_00963185.1| tyrosine recombinase [Sulfitobacter sp. NAS-14.1]
 gi|83840758|gb|EAP79929.1| tyrosine recombinase [Sulfitobacter sp. NAS-14.1]
          Length = 315

 Score =  239 bits (609), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 118/301 (39%), Positives = 183/301 (60%), Gaps = 9/301 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q+WL +    +G ++ T+ +Y+ D   FL F+  +  +   +  + +++ +++RA++++ 
Sbjct: 18  QSWLDHQRALKGAAENTITAYQGDLVDFLAFMTLHKGDSQGLGALSKITISDMRAWMAQT 77

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R+  +G RS+ R LS +K+F ++L +R+    + +L+ R+ K    LPR L    A  ++
Sbjct: 78  RSGDVGPRSMARKLSAVKAFYRWLAEREGFEPTAVLSTRSPKFPKKLPRPLAIDAAQAMI 137

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D+V + + H   W+ AR+ A+L LL+GCGLRISEAL L   +    +  LRI GKG K R
Sbjct: 138 DSVEMQSRH--AWVAARDVAVLTLLWGCGLRISEALGLKGADAPLPE-VLRIIGKGGKER 194

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VP+LP+ R A+  Y  +CPF    +   PLFR +RG PL      + +   R  LGLP 
Sbjct: 195 VVPVLPAARDAVEAYLRVCPFGKERDA--PLFRAVRGGPLAARAISQVMADARMQLGLPA 252

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           S T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ YT V++      +M++Y++ H
Sbjct: 253 SATPHALRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYTAVDTAR----LMDVYNRAH 308

Query: 319 P 319
           P
Sbjct: 309 P 309


>gi|163853685|ref|YP_001641728.1| tyrosine recombinase XerC [Methylobacterium extorquens PA1]
 gi|240141109|ref|YP_002965589.1| ptyrosine recombinase xerC, integrase/recombinase Ripx (xerC)
           [Methylobacterium extorquens AM1]
 gi|163665290|gb|ABY32657.1| tyrosine recombinase XerC [Methylobacterium extorquens PA1]
 gi|240011086|gb|ACS42312.1| ptyrosine recombinase xerC, integrase/recombinase Ripx (xerC)
           [Methylobacterium extorquens AM1]
          Length = 365

 Score =  239 bits (609), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 126/302 (41%), Positives = 182/302 (60%), Gaps = 8/302 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + W + L  ER ++  T+++YE D RQFLI  A  +    TI  +  L   ++RAF++ R
Sbjct: 28  RGWREALARERRMAANTVEAYERDLRQFLIHRAARSGTP-TIAGLIALKPRDLRAFMAAR 86

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R + IG RSL R L+G++SF ++L++    + + +  +R+ K    LPR L    AL + 
Sbjct: 87  RAEGIGGRSLMRMLAGLRSFARFLEREGHGSVAALGAVRSPKVERRLPRPLPISAALAMT 146

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKI 197
                       W+ AR++A++ LLYG GLRISEAL LT ++  M     +R+ GKG K+
Sbjct: 147 APETRPDDDRAPWVLARDAAVIALLYGSGLRISEALGLTARDAPMPGIDEVRVTGKGGKV 206

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R VP+LP+V +A+  Y  LCP    L+ + PLF G++G PL+P V Q  +  LR  LGLP
Sbjct: 207 RAVPVLPAVAEAVAAYLSLCPH--PLDPEGPLFVGVKGGPLSPRVVQYAVSALRGALGLP 264

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            S T H LRHSFATHLL+  G+LR+IQ +LGH  LSTTQIYT V++      +M  ++  
Sbjct: 265 ESATPHALRHSFATHLLARRGELRAIQELLGHASLSTTQIYTKVDAAR----LMSAFEDA 320

Query: 318 HP 319
           HP
Sbjct: 321 HP 322


>gi|85706394|ref|ZP_01037488.1| tyrosine recombinase XerC [Roseovarius sp. 217]
 gi|85669167|gb|EAQ24034.1| tyrosine recombinase XerC [Roseovarius sp. 217]
          Length = 306

 Score =  238 bits (608), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 124/299 (41%), Positives = 183/299 (61%), Gaps = 9/299 (3%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL   +  +G +  T+ +Y  D   FL F+  +  E   +  + +++ +++RA+++  R 
Sbjct: 13  WLAAQKALKGAAANTIDAYARDVGDFLRFMTQHHGETQGLGALSRITTSDMRAWMAHTRG 72

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +G RSL R LS +KSF ++L +R+    + +L+ R+ K    LPR L+ + A  ++D 
Sbjct: 73  GDVGPRSLARKLSAVKSFYRWLSEREGFEPTAVLSTRSPKFQRKLPRPLSPEAASEMIDT 132

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L     T WI AR+ A++ LLYGCGLRISEAL LT  + +   + LRI GKG K R+V
Sbjct: 133 --LEVQSLTPWIAARDQAVVTLLYGCGLRISEALGLTGAD-LPIGTVLRILGKGGKERLV 189

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P++   R A+ +Y  LCP+D+  N   PLF G RG  L+P + Q+ + Q R  LGLP + 
Sbjct: 190 PVIEPARAAVTQYARLCPYDIPRNG--PLFLGARGGALSPRLIQKVMEQTRAQLGLPATA 247

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           T H +RHSFATHLL+ GGDLR+IQ +LGH  LSTTQ YT V++      +ME+Y +THP
Sbjct: 248 TPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTGVDTAR----LMEVYARTHP 302


>gi|89053521|ref|YP_508972.1| site-specific tyrosine recombinase XerC [Jannaschia sp. CCS1]
 gi|88863070|gb|ABD53947.1| phage integrase [Jannaschia sp. CCS1]
          Length = 307

 Score =  238 bits (608), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 126/300 (42%), Positives = 172/300 (57%), Gaps = 9/300 (3%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            WL +L   RG ++ TL +Y  D  +FL F A +         +R L   ++RA++S +R
Sbjct: 15  GWLTHLRGVRGRAEATLTAYGADVGEFLAFQADHLGGSPGPAALRTLQTRDLRAWMSSQR 74

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +G RSL R LS +K+F  +  +R     + +L+MR  K +  LPR L E  A  ++ 
Sbjct: 75  ARDVGARSLARRLSAVKAFYNWWAERDGFDATAVLSMRAPKHTRRLPRPLTEVGAKDMIA 134

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              L    +  W+ AR+ A++ LLYGCGLRISEAL LT  +++     LRI GKG K R 
Sbjct: 135 G--LADQDDRDWVQARDMAVVTLLYGCGLRISEALGLT-ADLLPLPGILRITGKGGKERE 191

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VP+LP+ + A   Y  LCP DL      PLFR IRG  L P    + + + R  LGLP +
Sbjct: 192 VPVLPAAQDACARYAQLCPHDLAPGT--PLFRAIRGGALGPRAVAKVMEKTRLQLGLPAT 249

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T H +RHSFATHLL  GGDLR+IQ +LGH  LSTTQ YT V++      +ME+Y   HP
Sbjct: 250 ATPHAMRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYTAVDTAR----LMEVYANAHP 305


>gi|260464185|ref|ZP_05812378.1| tyrosine recombinase XerC [Mesorhizobium opportunistum WSM2075]
 gi|259029988|gb|EEW31271.1| tyrosine recombinase XerC [Mesorhizobium opportunistum WSM2075]
          Length = 312

 Score =  238 bits (608), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 140/310 (45%), Positives = 189/310 (60%), Gaps = 13/310 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L   R+ WL+ L  ER LS  T+++YE DTRQFL FL  +      I  I  L   ++R
Sbjct: 11  DLQAAREGWLKMLARERRLSPETVEAYERDTRQFLHFLTGHCGGSPGISDIANLRPADLR 70

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F++ RR    G R+L R L+GI+S L++L++R +   +    +R  ++  SLP+ L   
Sbjct: 71  GFLAARRNAGAGARTLGRGLAGIRSLLRFLERRGLANAAGAAALRAPRQPKSLPKPLTAS 130

Query: 133 QA--LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-LR 189
            A  +  V+  L     E  WI ARN+A+L LLYG GLRISEAL L   ++  +  T LR
Sbjct: 131 DAKHVVSVEGQLA----EEPWIAARNAAVLTLLYGSGLRISEALGLAGADLASEADTVLR 186

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG K R+VP+LP   +AI EY  LCP   +L+ +  LFRG RG PLNP + QR + +
Sbjct: 187 VTGKGGKTRLVPVLPVALRAIAEYRRLCPH--HLDPKGLLFRGARGGPLNPAIIQRDMAK 244

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           LR  L LP + T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQIYT V++      
Sbjct: 245 LRSALNLPDTATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQIYTGVDTTR---- 300

Query: 310 MMEIYDQTHP 319
           ++EIY+  HP
Sbjct: 301 LLEIYESAHP 310


>gi|284928595|ref|YP_003422327.1| hypothetical protein Dshi_5002 [Dinoroseobacter shibae DFL 12]
 gi|251736500|gb|ACT10200.1| hypothtical protein [Dinoroseobacter shibae DFL 12]
          Length = 308

 Score =  238 bits (608), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 129/301 (42%), Positives = 179/301 (59%), Gaps = 9/301 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + WL +L         TL +Y+ D   FL FLA +     +   +R+++ +++RA+++  
Sbjct: 15  ETWLTHLRALDDSPASTLSAYQRDVAGFLGFLARHDGGLASPARLRRITQSDMRAWMAAE 74

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R + +G RSL R+LS +KSF +++ +R     + +L  R+ K    LPR L E  AL ++
Sbjct: 75  RRRGLGARSLARALSAVKSFFRWVGERDGFEPTAVLAARSPKYQRKLPRPLAEDAALEMI 134

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             V L  +    WI AR+ A++ LLYGCGLRISEAL LT          L I+GKGDK R
Sbjct: 135 AQVELQAA--DSWIAARDVAVVTLLYGCGLRISEALGLT-GAAAPLPEVLTIRGKGDKER 191

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVP+LP+ R A+  Y  L P  L  +   PLFRG RG  LNP V  + + Q R  LGLP 
Sbjct: 192 IVPVLPAARTAVDTYLRLSPHPLEKDG--PLFRGKRGGQLNPRVIAKVMEQARMQLGLPS 249

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           S T H +RHSFATHLL+ GGDLR+IQ +LGH  LSTTQ YT V++      ++E+Y+  H
Sbjct: 250 SATPHAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYTAVDATR----LLEVYNAAH 305

Query: 319 P 319
           P
Sbjct: 306 P 306


>gi|75674624|ref|YP_317045.1| site-specific tyrosine recombinase XerC [Nitrobacter winogradskyi
           Nb-255]
 gi|123773314|sp|Q3SVJ8|XERC_NITWN RecName: Full=Tyrosine recombinase xerC
 gi|74419494|gb|ABA03693.1| tyrosine recombinase XerC subunit [Nitrobacter winogradskyi Nb-255]
          Length = 321

 Score =  238 bits (607), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 126/315 (40%), Positives = 188/315 (59%), Gaps = 8/315 (2%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P   + ++ ++   WL +L  ER LS  TL++Y  D RQ L+FL  +  E++T++    L
Sbjct: 11  PACAASDIGQQIVRWLTHLRAERRLSPKTLEAYARDVRQCLMFLGQHWSEQVTLEGFVAL 70

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
              +IR+F++ RR   IG RSL RSL+G++SF ++L++  +     +  +R  K   S+P
Sbjct: 71  EPADIRSFMAARRADDIGGRSLMRSLAGLRSFARFLEREGLGKVGALGAIRAPKVGKSVP 130

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + ++   A    D           WI AR++A++ LLYG GLRISEAL L  +++    +
Sbjct: 131 KPIHMSAAKRFADASERAGEDREPWIWARDAAVMALLYGSGLRISEALGLKRRDVPPPGA 190

Query: 187 --TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
              L + GKG+K R+VP+L +V   I EY  +CP   +L  + P+F G RG PL   + Q
Sbjct: 191 GDVLVVTGKGNKTRMVPVLQNVLALIHEYVAMCPH--SLPPEGPIFVGARGGPLRARIIQ 248

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             + ++R  LGLP S T H LRHSFATHLLS GGDLR+IQ +LGH  LSTTQIYT ++S+
Sbjct: 249 LVMARMRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDSE 308

Query: 305 NGGDWMMEIYDQTHP 319
                ++++Y   HP
Sbjct: 309 R----LLDVYRTAHP 319


>gi|90421704|ref|YP_530074.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris
           BisB18]
 gi|90103718|gb|ABD85755.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris
           BisB18]
          Length = 324

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 131/312 (41%), Positives = 186/312 (59%), Gaps = 8/312 (2%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            + +L+ E   WL  L  ER LS  TL++Y  D RQ L FL  + + +++I+    L   
Sbjct: 17  AAADLVAEATRWLAYLRSERRLSPKTLEAYTRDLRQCLTFLNEHWDAQVSIKRFAALEAG 76

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +IRAF++ RR  +IG RSL R+L+G++SF ++L++        +  +R  K   SLP+ +
Sbjct: 77  DIRAFMASRRADEIGGRSLMRALAGLRSFGRFLEREGKGKVGALSAIRAPKVGKSLPKPI 136

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQST 187
               A  L D       +   WI AR++A++ LLYG GLRISEAL L  +++       T
Sbjct: 137 QIAGAKRLADATERAGENREPWIWARDAAVMALLYGSGLRISEALGLKRRDVPLPGKGDT 196

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           L + GKG+K R+VP+L +V   I +Y  +CP  L    Q P+F G RG PL+P + Q  +
Sbjct: 197 LIVTGKGNKTRMVPVLQNVLSLIQDYVAVCPHPLPQ--QGPIFVGARGGPLSPRIIQLTM 254

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +LR  LGLP S T H LRHSFATHLLS GG+LR+IQ +LGH  LSTTQIYT ++S+   
Sbjct: 255 ERLRGALGLPDSATPHALRHSFATHLLSRGGELRAIQELLGHTSLSTTQIYTGIDSER-- 312

Query: 308 DWMMEIYDQTHP 319
             + E+Y   HP
Sbjct: 313 --LFEVYKTAHP 322


>gi|126737207|ref|ZP_01752942.1| tyrosine recombinase [Roseobacter sp. SK209-2-6]
 gi|126721792|gb|EBA18495.1| tyrosine recombinase [Roseobacter sp. SK209-2-6]
          Length = 328

 Score =  238 bits (606), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 128/316 (40%), Positives = 183/316 (57%), Gaps = 9/316 (2%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           NN   ++S       +NWL  L    G S+ T+ +Y+ D   FL F+  +      ++ +
Sbjct: 20  NNAGLLISPACRDALENWLLGLTALSGASENTITAYQGDLTSFLGFMTLHRGSPQGLKAL 79

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
             +   ++RA++++ R    G RSL R LS +KSF ++L +R+    + +L  R  K   
Sbjct: 80  ADIKTADMRAWMAQERGSGTGPRSLARRLSAVKSFYRWLAEREGFEPTAVLAARAPKFQK 139

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            LPR L E+ A  +++ V      ET WI AR+ A++ LLYGCGLRISEAL L   +   
Sbjct: 140 KLPRPLAEEAAKAVLERV--EQQSETDWIGARDLAVVTLLYGCGLRISEALGLKGGDA-P 196

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
             ++LRI GKG K R+VP+L + R A+  Y  LCP   +   + PLFRG+RG  LNP   
Sbjct: 197 LPASLRILGKGGKERLVPVLDAARDAVDHYLALCPH--SAEKETPLFRGVRGGALNPRQI 254

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           Q  + ++R  LGLP S T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ Y  V++
Sbjct: 255 QSTMAKVRAQLGLPASATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYAAVDT 314

Query: 304 KNGGDWMMEIYDQTHP 319
            +    +M +Y++ HP
Sbjct: 315 AH----LMAVYNRAHP 326


>gi|146337558|ref|YP_001202606.1| site-specific tyrosine recombinase XerC [Bradyrhizobium sp. ORS278]
 gi|146190364|emb|CAL74360.1| Tyrosine recombinase (integrase/recombinase) [Bradyrhizobium sp.
           ORS278]
          Length = 327

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 128/319 (40%), Positives = 190/319 (59%), Gaps = 10/319 (3%)

Query: 5   NLPEIVSFE--LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
           +LP+++  +  +++    WL +L  ER LS  T+++Y  D RQ L FL  +  E +T+  
Sbjct: 13  DLPDLIGADDGVVRAMTQWLAHLRSERRLSPKTVEAYARDLRQCLQFLCTHWGEPVTLPR 72

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
              L  ++IRAF++ RR   I  RSL R+L+G++SF ++L++        +  +R  K +
Sbjct: 73  FAALEASDIRAFMAMRRADDIAGRSLMRTLAGLRSFGRFLEREGQGKVGALAGVRAPKIA 132

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            SLP+ L    A  L D           W+ AR++A++ LLYG GLRISEAL L  + + 
Sbjct: 133 KSLPKPLPMDSAKRLTDADERAGESRETWVLARDAAVMALLYGSGLRISEALGLKRREVP 192

Query: 183 --DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
              +   L + GKG+K R+VP+L +V   I EY  LCP+   L  + P+F G +G PL+P
Sbjct: 193 RPGEGDVLIVTGKGNKTRMVPVLQNVLALIDEYARLCPY--PLPAEGPMFLGAKGGPLSP 250

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            + Q  + +LR  LGLP S T H LRHSFATHLLS GGDLR+IQ +LGH  LSTTQ+YT 
Sbjct: 251 RIIQLAMERLRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYTG 310

Query: 301 VNSKNGGDWMMEIYDQTHP 319
           ++S+     ++++Y   HP
Sbjct: 311 IDSER----LLQVYASAHP 325


>gi|84514470|ref|ZP_01001834.1| tyrosine recombinase [Loktanella vestfoldensis SKA53]
 gi|84511521|gb|EAQ07974.1| tyrosine recombinase [Loktanella vestfoldensis SKA53]
          Length = 306

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 122/300 (40%), Positives = 179/300 (59%), Gaps = 9/300 (3%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +WL +     G+++ T+ +Y  D   F+ FL  +  +   +  + +++ +++RA+++  R
Sbjct: 14  HWLDHERALAGVAENTIVAYRADVLGFMAFLTQHNGDTQGLGPLARVTLSDMRAWMAHER 73

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +  RSL RSLS +KSF ++L  R+    + +L+ R  K    LPR L+   A  ++D
Sbjct: 74  GRGVAARSLARSLSAVKSFYRWLAAREGFEPTAVLSTRAPKFQPKLPRPLSAPAASDMID 133

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            + L       W+ AR++A++ LLYGCGLRISEALSL  ++       LRI GKG K RI
Sbjct: 134 QIGLQAC--DPWVAARDTAVVTLLYGCGLRISEALSLQGRD-APLPPVLRITGKGGKQRI 190

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VP+L   R A+  Y  LCP++   +   PLFR IRG PL P   Q+ + Q R  LGLP +
Sbjct: 191 VPVLDIARDAVAGYLRLCPYEQAADA--PLFRAIRGGPLAPRAIQKVVEQTRLQLGLPGT 248

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T H LRHSFATHL++ GGDLR IQ +LGH  LSTTQ YT V++      +M +YD+ HP
Sbjct: 249 ATPHALRHSFATHLMAAGGDLRCIQELLGHASLSTTQAYTAVDAAQ----LMAVYDRAHP 304


>gi|126725541|ref|ZP_01741383.1| site-specific tyrosine recombinase XerC [Rhodobacterales bacterium
           HTCC2150]
 gi|126704745|gb|EBA03836.1| site-specific tyrosine recombinase XerC [Rhodobacterales bacterium
           HTCC2150]
          Length = 306

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 125/302 (41%), Positives = 179/302 (59%), Gaps = 11/302 (3%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           QNWL +++     ++ TL +Y  D   FL FL  +  E   I  ++ +   +IR++++  
Sbjct: 13  QNWLSHIKSLDDAAQNTLDAYTRDLTSFLSFLTQHFGETSGISALKAVGQRDIRSWMAFE 72

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R   +  RSL R LS +KSF ++  + +    + +L+ R  K    LPR +    A  ++
Sbjct: 73  RGSGVSARSLARKLSAVKSFYRWFGEHEGFEPTAVLSARTPKFQKKLPRPIAPDAARAMI 132

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKI 197
           D V L +  E  W+  R++A++ +LYGCGLRISEAL L   +  + D   LRI GKG K 
Sbjct: 133 DTVPLQS--EKNWVGLRDTAVVTVLYGCGLRISEALGLLGSDAPLPD--VLRILGKGGKE 188

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RIVP++P+ ++A+ EY   CP  +  +   PLFRGIRG  LNP + Q  + + R  LGLP
Sbjct: 189 RIVPVIPAAKRAVDEYIRACPHPIEADS--PLFRGIRGGALNPRIIQGVVAKARMQLGLP 246

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + T H LRHSFATHLL  GGDLRSIQ +LGH  LSTTQ YT V++      +ME+YD+ 
Sbjct: 247 ATATPHALRHSFATHLLEAGGDLRSIQELLGHASLSTTQAYTAVDTAR----LMEVYDKA 302

Query: 318 HP 319
           HP
Sbjct: 303 HP 304


>gi|163745808|ref|ZP_02153167.1| site-specific tyrosine recombinase XerC [Oceanibulbus indolifex
           HEL-45]
 gi|161380553|gb|EDQ04963.1| site-specific tyrosine recombinase XerC [Oceanibulbus indolifex
           HEL-45]
          Length = 314

 Score =  236 bits (601), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 121/319 (37%), Positives = 184/319 (57%), Gaps = 9/319 (2%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M     P ++S       Q WL +    +G ++ T+ +Y  D  +FL F+  +  +   +
Sbjct: 1   MSAEANPLLISPAARDALQTWLTHQSALKGAAENTVTAYRGDVTEFLAFMTLHKGDTQGL 60

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             + +++ +++RA++++ R+  +G RS+ R LS +K+F ++L +R+    + +L  R+ K
Sbjct: 61  GALAKITISDMRAWMARMRSGGVGSRSVARKLSAVKAFYRWLAEREGFEPTAVLLTRSPK 120

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LPR L E  A  L+D V   T     W+ AR+ A+L +L+GCGLRISEAL+L   +
Sbjct: 121 FQKKLPRPLAEDAARALIDCV--ETQARAPWVAARDVAVLTMLWGCGLRISEALALKGGD 178

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                S+LRI GKG K R+VP+LP+ R A+ +Y  +CP     +   PLFR IRG  L  
Sbjct: 179 A-PLPSSLRILGKGGKERVVPVLPAARAAVEDYLAVCPHPQEPHA--PLFRAIRGGALGA 235

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               + +   R  LGLP + T H +RHSFATHLL  GGDLR+IQ +LGH  LSTTQ YT 
Sbjct: 236 RAVAQVMADARMQLGLPATATPHAMRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYTA 295

Query: 301 VNSKNGGDWMMEIYDQTHP 319
           V++      +ME+Y+  HP
Sbjct: 296 VDTAR----LMEVYNNAHP 310


>gi|188583991|ref|YP_001927436.1| tyrosine recombinase XerC [Methylobacterium populi BJ001]
 gi|179347489|gb|ACB82901.1| tyrosine recombinase XerC [Methylobacterium populi BJ001]
          Length = 367

 Score =  235 bits (600), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 125/303 (41%), Positives = 181/303 (59%), Gaps = 12/303 (3%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLA--FYTEEKITIQTIRQLSYTEIRAFISK 77
            W + L  ER ++  T+++YE D RQFL + A  F T    TI  +  L   ++RAF++ 
Sbjct: 29  GWREALARERRMAANTVEAYERDLRQFLAYRAARFGTP---TIAGLIALKPRDLRAFMAA 85

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           RR + IG RSL R L+G++SF ++L++    + + +  +R+ K    LPR L    AL +
Sbjct: 86  RRAEGIGGRSLMRMLAGLRSFARFLEREGHGSVAALGAVRSPKVERRLPRPLPVPAALAM 145

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDK 196
                        W+ AR++A++ LLYG GLRISEAL L  ++  +     +R+ GKG K
Sbjct: 146 TAPGTRPDDSREPWVLARDAAVIALLYGSGLRISEALGLAARDAPVPGIDEVRVTGKGGK 205

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +R VP+LP+V +A+  Y  LCP    L+ + PLF G++G PL+P V Q  +  LR  LGL
Sbjct: 206 VRAVPVLPAVAEAVAAYLSLCPH--PLDPEGPLFVGVKGGPLSPRVVQYAVAALRGALGL 263

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           P S T H LRHSFATHLL+  G+LR+IQ +LGH  LSTTQIYT V++      +M  ++ 
Sbjct: 264 PESATPHALRHSFATHLLARQGELRAIQELLGHASLSTTQIYTKVDAAR----LMSAFED 319

Query: 317 THP 319
            HP
Sbjct: 320 AHP 322


>gi|154244121|ref|YP_001415079.1| integrase family protein [Xanthobacter autotrophicus Py2]
 gi|154158206|gb|ABS65422.1| integrase family protein [Xanthobacter autotrophicus Py2]
          Length = 342

 Score =  235 bits (599), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 122/316 (38%), Positives = 182/316 (57%), Gaps = 6/316 (1%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           + L   V+ E+    + WL  L  ER LS  TL++Y  D    L+ L  +      +  +
Sbjct: 14  HGLLSAVTPEVGAAIEGWLAGLAHERRLSPKTLEAYARDLAVVLLRLTDHLGACPGLGDL 73

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
             L+  ++RA ++ RR   +  R+L R L+  +SF ++L++  +     +  +R  K   
Sbjct: 74  AGLTTADVRAVLAARRADGVAPRTLVRLLAAARSFGRHLEREGLGKVGALTAVRAPKVPR 133

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           SLP+ ++   A  L D           W+ AR++A++ LLYG GLRISEALSLTP+++  
Sbjct: 134 SLPKPVSIAAARALSDPTTRAGEDREDWVLARDAAVIALLYGAGLRISEALSLTPRDVPA 193

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           D  ++ + GKG K R+VPL+  VR++I EY  +CP    L  + PLFRG RG PL+P + 
Sbjct: 194 DAESITVTGKGRKTRMVPLIAPVRRSIAEYRAICPH--ALGPEGPLFRGTRGGPLSPRIV 251

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           Q  + ++R  LGLP S T H LRH+FATHLLS GG++R+IQ +LGH  LSTTQIYT V++
Sbjct: 252 QLAVERMRGALGLPQSATPHALRHAFATHLLSRGGEIRAIQELLGHASLSTTQIYTEVDA 311

Query: 304 KNGGDWMMEIYDQTHP 319
                 +M  +   HP
Sbjct: 312 TA----LMAAWRSAHP 323


>gi|84683488|ref|ZP_01011391.1| tyrosine recombinase XerC [Maritimibacter alkaliphilus HTCC2654]
 gi|84668231|gb|EAQ14698.1| tyrosine recombinase XerC [Rhodobacterales bacterium HTCC2654]
          Length = 313

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 121/302 (40%), Positives = 179/302 (59%), Gaps = 11/302 (3%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
             WL +L    G +  T+++Y  D   FL FL+ +         +  ++ +++RA+++  
Sbjct: 16  SGWLDHLRALDGAAANTIEAYRKDVVSFLAFLSAHHGTSHGRTALASVTISDMRAWMASE 75

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R   +  RSL R+LS +K F ++L  R     S +L+ R  K +  LPR ++++ A  ++
Sbjct: 76  RAGGLSARSLARALSAVKGFYRWLSDRDGFDASTVLSTRAPKFTAKLPRPVSQEAAEEVI 135

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ-NIMDDQSTLRIQGKGDKI 197
               +       WI AR++A++ LLYGCGLRISEAL LT + + + D   LRI GKG K 
Sbjct: 136 STTAIQA--RDGWIGARDAAVVTLLYGCGLRISEALGLTGRAHPLPD--VLRIVGKGGKE 191

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VP+LP+ R A+  Y  LCP+ +  +   PLF G RGK L P   Q+ +   R  LGLP
Sbjct: 192 RLVPVLPAARDAVASYVRLCPYPVTDDT--PLFYGARGKALGPRTVQKAMESARLQLGLP 249

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + T H +RHSFATHLL+ GGDLR+IQ +LGH  LSTTQ YT V+++     +ME+YD+ 
Sbjct: 250 ATATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTAVDTQR----LMEVYDRA 305

Query: 318 HP 319
           HP
Sbjct: 306 HP 307


>gi|119385228|ref|YP_916284.1| site-specific tyrosine recombinase XerC [Paracoccus denitrificans
           PD1222]
 gi|119374995|gb|ABL70588.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 312

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 125/301 (41%), Positives = 178/301 (59%), Gaps = 9/301 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + WL +    R  S  T+++Y+ D   FL FL  Y        T+  L+ T++RAF +  
Sbjct: 19  ERWLASERAARDRSDHTIRAYQADLLAFLTFLGSYHGTPALPATLAGLTQTDMRAFAAAE 78

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R + +  RSL R LS  +SF++++  R     S  L  R  K + SLPR L  +QA  ++
Sbjct: 79  RGRGLSARSLARRLSATRSFIRWMSDRHGFDASRALASRGPKYTRSLPRPLAPEQAQDVL 138

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +  +  ++H   WI  R++A+L LL+GCGLRISEAL L   +    +  L I+GKG + R
Sbjct: 139 E--ITGSTHPEAWIATRDAAVLTLLWGCGLRISEALGLNGAD-WPLREALTIRGKGGRER 195

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            VP+LP  R+AI +Y  LCP+ L    + PLFRG RG  L+P +    +RQ R+ LGLP 
Sbjct: 196 QVPVLPIAREAIADYLRLCPYPLQ--AKAPLFRGARGGRLSPTLISGAMRQARQVLGLPP 253

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ+YT V+  +    ++ +Y   H
Sbjct: 254 TATPHALRHSFATHLLTAGGDLRTIQELLGHASLSTTQVYTGVDDAH----LLAVYRAAH 309

Query: 319 P 319
           P
Sbjct: 310 P 310


>gi|323137166|ref|ZP_08072245.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322397524|gb|EFY00047.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 336

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 130/323 (40%), Positives = 185/323 (57%), Gaps = 12/323 (3%)

Query: 2   EGNNLPEIVSF----ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK 57
           E   LP    F    ++ +E   WLQ L  ER  S+ T+ +Y  D   FL FL  +   K
Sbjct: 18  EARPLPGPAFFSAAPQIAEEAALWLQALSGERRASRHTIDAYARDVGVFLRFLTEHLGAK 77

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
                +  +   ++RAF+++RR   +  RSL R+L+ +++FL++L+K+ +        +R
Sbjct: 78  PDAAALSAMQPADLRAFLARRRNDGLESRSLLRALAAVRNFLRFLEKKGLARTDVFGAVR 137

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             K+ +SLP+AL    A  L+D           W+ AR++A++ LLYG GLRISEALS+ 
Sbjct: 138 APKRPHSLPKALTVGDARDLIDPEQRAGEAREPWVLARDAAVMALLYGVGLRISEALSIQ 197

Query: 178 PQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
             +  +     + I GKG K R +P++  VR+AI  Y  +CP+DL      PLF G RG 
Sbjct: 198 RADAPIGRTDRVTITGKGGKTRTLPVIEPVRRAIEAYLAICPYDLAGG---PLFVGARGG 254

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           PL+P + Q  I++LR  LGLP S T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ
Sbjct: 255 PLSPRIVQLAIQRLRGALGLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQ 314

Query: 297 IYTNVNSKNGGDWMMEIYDQTHP 319
           IYT V+ K     +++ Y   HP
Sbjct: 315 IYTAVDKKR----LLDAYRSAHP 333


>gi|115522315|ref|YP_779226.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris
           BisA53]
 gi|115516262|gb|ABJ04246.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris
           BisA53]
          Length = 342

 Score =  234 bits (597), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 126/312 (40%), Positives = 185/312 (59%), Gaps = 8/312 (2%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            S +L  E   WL +L  ER LS  TL++Y  D RQFL FL  +   ++++    +L   
Sbjct: 35  ASKDLTAEIVRWLGHLRAERRLSPKTLEAYARDLRQFLGFLCEHWGTQVSVARFAKLEAG 94

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++RAF++ RR   IG RSL R+L+G++SF ++L++        +  +R  K   +LP+ +
Sbjct: 95  DVRAFMASRRADAIGGRSLMRALAGLRSFGRFLEREGKGKVGALSAIRAPKVGKTLPKPI 154

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQST 187
               A  L D           WI  R++A++ LLYG GLRISEAL L  +++       T
Sbjct: 155 QIASAKRLTDPDERAGEERENWILVRDAAVMALLYGSGLRISEALGLKRRDVPLPGQGDT 214

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           L + GKG+K R+VP+L SV +++ +Y  +CP  L  +    +F G RG PL+P + Q  +
Sbjct: 215 LIVTGKGNKTRMVPVLQSVLQSVADYVAICPHPLAADRA--IFVGARGGPLSPRIIQLTM 272

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            ++R  LGLP S T H LRHSFATHLLS GG+LR+IQ +LGH  LSTTQIYT ++S+   
Sbjct: 273 ERMRGALGLPDSATPHALRHSFATHLLSRGGELRAIQELLGHASLSTTQIYTGIDSER-- 330

Query: 308 DWMMEIYDQTHP 319
             ++E+Y   HP
Sbjct: 331 --LLEVYATAHP 340


>gi|328545835|ref|YP_004305944.1| Site-specific recombinase, phage integrase family protein
           [polymorphum gilvum SL003B-26A1]
 gi|326415575|gb|ADZ72638.1| Site-specific recombinase, phage integrase family protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 316

 Score =  233 bits (593), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 137/300 (45%), Positives = 185/300 (61%), Gaps = 9/300 (3%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL +L  ER LS  TL +YE D RQFL FL  +      +  +R L   + RAF+++RR 
Sbjct: 23  WLDHLGDERRLSDKTLVAYERDVRQFLRFLTDHLGGTPGMAELRDLRPADFRAFLARRRR 82

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                RSL R L+GI+SFL +L++R     +    +R  ++  SLP+ ++   A  +V  
Sbjct: 83  AGAQSRSLARGLAGIRSFLGFLERRGEVNAAAAGAIRPPRQPRSLPKPVSAADARAIVSG 142

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLRIQGKGDKIRI 199
            L   +    WI+ARN+A+L LLYGCGLR++EALSLT +      + TL I+GKG K RI
Sbjct: 143 ELAMEAE--PWIEARNAAVLTLLYGCGLRLAEALSLTGRTAPRRGTKTLTIRGKGGKERI 200

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VP+LP V +A+  Y  LCP+    +   PLF G RG PLNP + Q  +++LR  L LP S
Sbjct: 201 VPVLPVVCEAVDAYLKLCPYTPEPDG--PLFLGARGGPLNPRLVQLAMQKLRSALALPDS 258

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQIYT V++      ++E YD+ HP
Sbjct: 259 ATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQIYTEVDTAR----LLEAYDKAHP 314


>gi|154251910|ref|YP_001412734.1| integrase family protein [Parvibaculum lavamentivorans DS-1]
 gi|154155860|gb|ABS63077.1| integrase family protein [Parvibaculum lavamentivorans DS-1]
          Length = 326

 Score =  233 bits (593), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 127/301 (42%), Positives = 183/301 (60%), Gaps = 9/301 (2%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E +NW  +L  ER +S+ TL +Y  D  +F  FL  +     T++ + +L   + RAF+S
Sbjct: 31  EIRNWYSHLMGERRMSEATLINYHRDLTRFFEFLVDHLGGPATLKDLGRLELRDFRAFVS 90

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           +RR   +  RSL R LS ++SF ++L +  + + ++   +R+ K  +++P+ L    A  
Sbjct: 91  QRRKDGLQSRSLARMLSSVRSFFRFLDRTHVLSNASATALRSPKLPHAIPKPLTAAGARE 150

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+D      +HE  WI AR+ A+L LLYGCGLR+SEAL L  ++    +  LRI GKG K
Sbjct: 151 LLDEA--EIAHEEPWIGARDIAVLTLLYGCGLRVSEALGLN-RSEAPLKDVLRITGKGGK 207

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+VP+LP+ R A+ +Y  LCP  L  +   PLF G RG  L     +  + +LRR LGL
Sbjct: 208 ERVVPVLPAARMAVDDYLRLCPHGLAKDD--PLFVGSRGARLGQRQVRETMTRLRRRLGL 265

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           P S T H LRHSFATHLL+ GGDLRSIQ +LGH  LSTTQ+YT V++      ++E+YD+
Sbjct: 266 PESATPHALRHSFATHLLAGGGDLRSIQELLGHASLSTTQMYTEVDAAR----LLEVYDK 321

Query: 317 T 317
            
Sbjct: 322 A 322


>gi|114571348|ref|YP_758028.1| phage integrase family protein [Maricaulis maris MCS10]
 gi|114341810|gb|ABI67090.1| phage integrase family protein [Maricaulis maris MCS10]
          Length = 311

 Score =  232 bits (592), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 131/299 (43%), Positives = 182/299 (60%), Gaps = 9/299 (3%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L  ER LS  TL +Y+ D   F  FL  +      + T+  LS  + RA+++ RR 
Sbjct: 17  FLAHLSGERRLSPRTLDAYQRDLDNFGAFLCEHHGRLPDLMTLGDLSSRDFRAYMASRRR 76

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RSL R+LS I++F  Y K+R     + +  + + K   S P+ ++E  A +L+  
Sbjct: 77  DGLSARSLARALSAIRTFFDYAKRRWGVDNAALSLVESPKLLRSAPKPVSESAAKSLLAE 136

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                  +  W+ AR++A+L LLYGCGLRISEALSLT  N +    TLRI GKG+K RIV
Sbjct: 137 TGARGGPD--WVSARDNAVLLLLYGCGLRISEALSLT-GNDLPIGDTLRIAGKGNKTRIV 193

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+LP+V +AI +Y  LCPF    +  L  FRG+RG  L+    Q  +++LR  LGLP + 
Sbjct: 194 PVLPAVAEAISQYVALCPFATKDDAAL--FRGVRGGNLSARSVQALMQELRGRLGLPETA 251

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           T H LRH+FATHLL++GGDLR+IQ +LGH  LSTTQIY +V S      ++ IYD THP
Sbjct: 252 TPHALRHAFATHLLAHGGDLRAIQELLGHASLSTTQIYADVESAR----LLSIYDGTHP 306


>gi|217977361|ref|YP_002361508.1| integrase family protein [Methylocella silvestris BL2]
 gi|217502737|gb|ACK50146.1| integrase family protein [Methylocella silvestris BL2]
          Length = 329

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 133/308 (43%), Positives = 182/308 (59%), Gaps = 7/308 (2%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL    + WL +L  ER +++LTL +Y  D RQFL F A +     ++  +  LS  ++R
Sbjct: 25  ELASCARAWLAHLGGERRVAELTLAAYSRDLRQFLSFAAIHFGAPPSLAMVSTLSPADLR 84

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           AF++ RR   +G RSL R L+G++SF  YL++  +   + +  +R  K    LP+ L   
Sbjct: 85  AFMAARRAAGVGSRSLLRQLAGLRSFTHYLQRSGVQQSAALGAVRAPKAPRRLPKPLTAA 144

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS-LTPQNIMDDQSTLRIQ 191
            A  +             WI AR++A+L LLYG GLRISEALS L     + ++ TLRI 
Sbjct: 145 AACAVTSVESRAGEDRPTWILARDAAVLGLLYGAGLRISEALSILRADAPIGERDTLRIT 204

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG KIR  P++  VR+A+  Y  LCP+  +L  +  LF G +G PL+P + Q  + ++R
Sbjct: 205 GKGGKIREAPVIAPVRQAVEAYLKLCPY--HLPPERHLFVGAKGGPLSPRIIQLAVERMR 262

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             LGLP S T H LRHSFATHLLS GGDLRSIQ +LGH  LSTTQIYT V+S      ++
Sbjct: 263 GALGLPDSATPHALRHSFATHLLSRGGDLRSIQELLGHASLSTTQIYTAVDSAR----LI 318

Query: 312 EIYDQTHP 319
           E Y   HP
Sbjct: 319 EAYRSAHP 326


>gi|83944764|ref|ZP_00957130.1| integrase/recombinase XerC, putative [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851546|gb|EAP89401.1| integrase/recombinase XerC, putative [Oceanicaulis alexandrii
           HTCC2633]
          Length = 313

 Score =  231 bits (589), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 121/299 (40%), Positives = 181/299 (60%), Gaps = 9/299 (3%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +LE ER LS  T+++Y+ D      FL  +   ++T++ +  LS  + RA+++ RR 
Sbjct: 19  FLSHLEGERRLSPRTVEAYDRDLSGLFEFLTGHLGGRLTLKALSDLSSADWRAWLADRRR 78

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +G R+L+R LS  ++F  Y ++R       +  + + K     PR ++E  A +L+  
Sbjct: 79  DGVGPRTLQRGLSAARTFFSYGRRRWGLDNPALGLVESPKAQRRQPRPVSESAAKSLLKE 138

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
               T  +  WI AR++A+L LLYGCGLRISEAL+LT ++    +  LR+ GKG K RIV
Sbjct: 139 A--ETGAKEPWIGARDAAVLSLLYGCGLRISEALALTGRDHPLPE-VLRVAGKGGKTRIV 195

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+LP+VR+A+  Y D CP+ +  +   PLFR  RG PL     Q  ++ +R  LGLP + 
Sbjct: 196 PVLPAVRQAVSAYVDACPYQIERDE--PLFRASRGGPLQARAMQSAMQTMRSRLGLPATA 253

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           T H LRH+FATHLL++GGDLR+IQ +LGH  LSTTQIY ++        ++ I+  THP
Sbjct: 254 TPHALRHAFATHLLAHGGDLRAIQDLLGHASLSTTQIYADIEQSR----LIAIHAATHP 308


>gi|254466182|ref|ZP_05079593.1| tyrosine recombinase XerC [Rhodobacterales bacterium Y4I]
 gi|206687090|gb|EDZ47572.1| tyrosine recombinase XerC [Rhodobacterales bacterium Y4I]
          Length = 306

 Score =  231 bits (589), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 126/301 (41%), Positives = 175/301 (58%), Gaps = 9/301 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q WL+ L      S  TL +Y  D   FL F+  +      +  + +++  ++RA+++  
Sbjct: 13  QLWLERLGGLEDASANTLAAYRGDVTAFLAFMTQHFGGPQGLGALARITTADMRAWMASE 72

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R    G RSL R LS +K+F ++L KR+    + +L  R  K    LPR L  + A  ++
Sbjct: 73  RNSGTGARSLARKLSAVKTFYRWLAKREGFEPAAVLLARAPKFQKKLPRPLAPEAAKAVL 132

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           + V L +  ET W+ AR+ A++ LLYGCGLRISEAL L   +    Q  LRI GKG K R
Sbjct: 133 EAVELQS--ETDWVAARDVAVVTLLYGCGLRISEALGLKGADAPLPQ-VLRILGKGRKER 189

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VP+LP+ R A+  Y +LCP         PLFRG+RG  LNP   Q  + + R  LGLP 
Sbjct: 190 VVPVLPAARAAVDRYLELCPHPQERAA--PLFRGVRGGALNPRQIQGVMAKTRAQLGLPA 247

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ YT V++ +    +M++Y + H
Sbjct: 248 TATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQTYTAVDTTH----LMDVYMRAH 303

Query: 319 P 319
           P
Sbjct: 304 P 304


>gi|148252009|ref|YP_001236594.1| site-specific tyrosine recombinase XerC [Bradyrhizobium sp. BTAi1]
 gi|146404182|gb|ABQ32688.1| tyrosine recombinase XerC subunit [Bradyrhizobium sp. BTAi1]
          Length = 324

 Score =  231 bits (589), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 124/308 (40%), Positives = 182/308 (59%), Gaps = 8/308 (2%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +++    WL +L  ER LS  T+++Y  D RQ L FL  +    +T+     L   +IRA
Sbjct: 21  VIRAMMQWLAHLRSERRLSPKTVEAYARDLRQCLQFLCTHWGGPVTLARFAALEAADIRA 80

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F++ RR   I  RSL R+L+G++SF ++L++        +  +R  K + SLP+ L    
Sbjct: 81  FMAMRRADDIAGRSLMRTLAGLRSFGRFLEREGQGKVGALAGIRAPKIAKSLPKPLPMDA 140

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQ 191
           A  L D           W+ AR++A++ LLYG GLRISEAL L  + +    +   L + 
Sbjct: 141 AKRLADADERAGETRETWVLARDAAVMALLYGSGLRISEALGLKRREVPRPGEGDVLVVT 200

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG+K R+VP+L +V + I +Y  LCP+   L  + P+F G +G PL+P + Q  + +LR
Sbjct: 201 GKGNKTRMVPVLQNVLQLIDDYARLCPY--PLPAEGPMFLGAKGGPLSPRIIQLAMERLR 258

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             LGLP S T H LRHSFATHLLS GGDLR+IQ +LGH  LSTTQ+YT ++S+     ++
Sbjct: 259 GALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYTGIDSER----LL 314

Query: 312 EIYDQTHP 319
           ++Y   HP
Sbjct: 315 QVYASAHP 322


>gi|310816227|ref|YP_003964191.1| site-specific tyrosine recombinase XerC [Ketogulonicigenium vulgare
           Y25]
 gi|308754962|gb|ADO42891.1| site-specific tyrosine recombinase XerC [Ketogulonicigenium vulgare
           Y25]
          Length = 307

 Score =  229 bits (584), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 127/312 (40%), Positives = 179/312 (57%), Gaps = 11/312 (3%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++S  L      WL +     G +  TL +Y  D   FL F+  +         I Q+  
Sbjct: 1   MISAALADALDRWLVHSGAIEGKAGATLVAYRHDVSTFLTFMTLHHGGPQGFAAIAQIEV 60

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++RA++++ R   +  RSL R+LS +K F  +L  R+    + +L  R  K   +LPR 
Sbjct: 61  ADMRAWMAQMRGTGLSSRSLARALSAVKGFYTWLAAREGFEPTAVLAARAPKFQRNLPRP 120

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQST 187
           L    A  L+D V + ++    W+ AR+ A++ LLYG GLRISEALSLT ++  + D   
Sbjct: 121 LEVDDARRLMDRVEVQSNE--PWVAARDLAVITLLYGSGLRISEALSLTGEDYPLPD--V 176

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           LR+ GKG K R+VP+LP    A+ +Y    P+        PLFRG+RG  L+P + Q+ I
Sbjct: 177 LRMTGKGGKQRLVPVLPIAAAAVKDYVRRTPYAPVAGA--PLFRGVRGGALSPRIIQKMI 234

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            Q+R  LGLP S T H LRHSFATHLL+ GGDLRSIQ +LGH  LSTTQ YT V++ +  
Sbjct: 235 EQVRLQLGLPASATPHALRHSFATHLLAAGGDLRSIQELLGHASLSTTQAYTAVDAAH-- 292

Query: 308 DWMMEIYDQTHP 319
             +M+IYD+ HP
Sbjct: 293 --LMQIYDRAHP 302


>gi|83592556|ref|YP_426308.1| site-specific tyrosine recombinase XerC [Rhodospirillum rubrum ATCC
           11170]
 gi|83575470|gb|ABC22021.1| tyrosine recombinase XerC subunit [Rhodospirillum rubrum ATCC
           11170]
          Length = 330

 Score =  229 bits (584), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 123/299 (41%), Positives = 180/299 (60%), Gaps = 9/299 (3%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL  L+ ER  S+ TL +Y  D   FL FL  Y  E+  + T+  L   + RA+++ R T
Sbjct: 38  WLGWLQGERRASRHTLDAYGRDLAAFLTFLRDYRGEEPGLATLASLGPADFRAYMAARLT 97

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q +   S+ R+LS +++  ++L +  +     I  +R+ ++  ++P+AL+E +AL  +  
Sbjct: 98  QGLSRPSMARALSTLRNLFRWLDREGVLRNGAIATIRSPRQPQAVPKALSESEALDALS- 156

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +     +  W+  R+ A+  LLYGCGLR+ EAL L  +  +     +RI GKG K R+V
Sbjct: 157 -VASDLQDDPWLAKRDLALFTLLYGCGLRLGEALDLD-RGDLPSGEVMRITGKGRKERLV 214

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           PLLP V +A+ +Y   CPF    +   PLF G RGK LNPGV QR +R+LR +LGLP + 
Sbjct: 215 PLLPVVVEALADYLAACPFAGGPDD--PLFLGSRGKRLNPGVVQRQMRRLRGFLGLPETA 272

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ YT V++      ++ ++  THP
Sbjct: 273 TPHALRHSFATHLLAQGGDLRTIQELLGHASLSTTQRYTKVDAGT----LVGLHGATHP 327


>gi|158425627|ref|YP_001526919.1| putative site-specific recombinase [Azorhizobium caulinodans ORS
           571]
 gi|158332516|dbj|BAF90001.1| putative site-specific recombinase [Azorhizobium caulinodans ORS
           571]
          Length = 327

 Score =  228 bits (582), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 120/305 (39%), Positives = 176/305 (57%), Gaps = 12/305 (3%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + WL  L  ER LS  T  +Y  D    L  L  +   + T+  +  L+  ++RA ++ R
Sbjct: 29  EGWLARLAHERRLSPKTQDAYARDLTVVLNLLTLHLGHRPTVADMAALAPADVRAVLAAR 88

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R + +  R+L R ++  +SF ++L++  +     +  +R  K   SLP+ ++   A  L 
Sbjct: 89  RMEGVAPRTLVRLMAAARSFGRHLEREGLGKVGALAAVRAPKVPRSLPKPVSVSDAKALA 148

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT----PQNIMDDQSTLRIQGKG 194
           D           W+ AR++A++ LLYGCGLRISEAL LT    P+    DQ T  + GKG
Sbjct: 149 DPATRAGEDRAPWVLARDAAVIALLYGCGLRISEALGLTRSMMPEPGGGDQIT--VTGKG 206

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +K R+VPLLP V +A+ +Y  LCP+ L  +   PLFRG +G PL+  + Q  + ++R  L
Sbjct: 207 NKTRMVPLLPQVTQAVADYAALCPYVLEPDK--PLFRGAKGGPLSARIVQMAVERMRGAL 264

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           GLP S T H LRHSFATHLL+ GG+LR+IQ +LGH  LSTTQ+YT V++      +M+ Y
Sbjct: 265 GLPDSATPHALRHSFATHLLARGGELRAIQELLGHASLSTTQVYTAVDATR----LMDAY 320

Query: 315 DQTHP 319
              HP
Sbjct: 321 RAAHP 325


>gi|163742251|ref|ZP_02149639.1| site-specific tyrosine recombinase XerC [Phaeobacter gallaeciensis
           2.10]
 gi|161384581|gb|EDQ08962.1| site-specific tyrosine recombinase XerC [Phaeobacter gallaeciensis
           2.10]
          Length = 311

 Score =  228 bits (581), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 120/285 (42%), Positives = 170/285 (59%), Gaps = 9/285 (3%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T+ +Y  D  +FL F+  +      +  + ++S  ++RA+++  R    G RSL R LS 
Sbjct: 34  TVTAYRGDVVEFLAFMTHHFGGPQGLGALAEISTGDMRAWMAATRATGTGARSLARKLSA 93

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +KSF  +L +R+    + +L+ R+ K    LPR L E  A  +++ V   ++  T W+ A
Sbjct: 94  VKSFYTWLAERQGFEPTAVLSARSPKFQKKLPRPLAEDAARAVIETVEFQST--TDWVAA 151

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A++ LLYGCGLRISEAL LT  +     + LRI GKG K RIVP+L + R A+  Y 
Sbjct: 152 RDVAVVTLLYGCGLRISEALGLTGAD-APLPAVLRITGKGGKERIVPVLSAARAAVDRYL 210

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
            LCP         PLFRG+RG  LN  + +  + Q R  LGLP S T H LRHSFATHLL
Sbjct: 211 RLCPHPQERAA--PLFRGVRGGALNARLIRSAMAQARAQLGLPASATPHALRHSFATHLL 268

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
             GGDLR+IQ +LGH  LSTTQ YT V++ +    +M++Y++ HP
Sbjct: 269 EAGGDLRAIQELLGHASLSTTQAYTAVDTAH----LMDVYNRAHP 309


>gi|254486283|ref|ZP_05099488.1| tyrosine recombinase XerC [Roseobacter sp. GAI101]
 gi|214043152|gb|EEB83790.1| tyrosine recombinase XerC [Roseobacter sp. GAI101]
          Length = 314

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 116/305 (38%), Positives = 177/305 (58%), Gaps = 11/305 (3%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q WL +    +G ++ T+ +Y+ D   FL F+  +  + I +  +  ++ +++R+++++ 
Sbjct: 19  QTWLDHQRALKGAAENTITAYQGDVTDFLAFMTLHKGDSIGLGALANITISDMRSWMART 78

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R   +G RSL R LS +K+F ++L +R+    + +L+ R+ K    LPR L    A  ++
Sbjct: 79  RGPDVGPRSLARKLSAVKAFYRWLAEREGFEPTAVLSTRSPKFPKKLPRPLAVDAAKAMI 138

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKI 197
           D V L +     W+ AR+ A+L LL+GCGLRISEAL L   +  + D   LRI GKG K 
Sbjct: 139 DCVELQSPRP--WVAARDVAVLTLLWGCGLRISEALGLKGADAPLPD--VLRIVGKGGKE 194

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VP+LP+ R A+  Y   CP        L  F+ +RG PL      + +   R  LGLP
Sbjct: 195 RVVPVLPAARDAVDAYLRACPHPQEHGTAL--FKAVRGGPLAARAIAQVMADARMQLGLP 252

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + T H +RHSFATHLL  GGDLR+IQ +LGH  LSTTQ YT V++      +M++Y++ 
Sbjct: 253 ATATPHAMRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYTAVDTAR----LMDVYNRA 308

Query: 318 HPSIT 322
           HP  T
Sbjct: 309 HPKAT 313


>gi|163738332|ref|ZP_02145747.1| phage integrase [Phaeobacter gallaeciensis BS107]
 gi|161388253|gb|EDQ12607.1| phage integrase [Phaeobacter gallaeciensis BS107]
          Length = 311

 Score =  228 bits (580), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 120/285 (42%), Positives = 170/285 (59%), Gaps = 9/285 (3%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T+ +Y  D  +FL F+  +      +  + ++S  ++RA+++  R    G RSL R LS 
Sbjct: 34  TITAYRGDVVEFLAFMTHHFGGPQGLGALAEISTGDMRAWMAATRATGTGARSLARKLSA 93

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +KSF  +L +R+    + +L+ R+ K    LPR L E  A  +++ V   ++  T W+ A
Sbjct: 94  VKSFYTWLAERQGFEPTAVLSARSPKFQKKLPRPLAEDAARAVIETVEFQST--TDWVAA 151

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A++ LLYGCGLRISEAL LT  +     + LRI GKG K RIVP+L + R A+  Y 
Sbjct: 152 RDVAVVTLLYGCGLRISEALGLTGAD-APLPAVLRITGKGGKERIVPVLHAARAAVDRYL 210

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
            LCP         PLFRG+RG  LN  + +  + Q R  LGLP S T H LRHSFATHLL
Sbjct: 211 RLCPHPQERAA--PLFRGVRGGALNARLIRSAMAQARAQLGLPASATPHALRHSFATHLL 268

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
             GGDLR+IQ +LGH  LSTTQ YT V++ +    +M++Y++ HP
Sbjct: 269 EAGGDLRAIQELLGHASLSTTQAYTAVDTAH----LMDVYNRAHP 309


>gi|114769433|ref|ZP_01447059.1| tyrosine recombinase [alpha proteobacterium HTCC2255]
 gi|114550350|gb|EAU53231.1| tyrosine recombinase [alpha proteobacterium HTCC2255]
          Length = 305

 Score =  226 bits (577), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 121/301 (40%), Positives = 181/301 (60%), Gaps = 9/301 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +NWL +L    G ++ T+ +Y  D   F+ FL+ +  +  +   + ++S  ++R++IS  
Sbjct: 12  ENWLSSLSAVGGRAEKTIDAYRHDVSHFIHFLSQHNGKMPSKAILSKVSVKDMRSWISHA 71

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R   +  RSL R+LS IKSF +++ +    + + +L+ R  K    LPR + +  A  L+
Sbjct: 72  RRSGLSPRSLARALSAIKSFYRWMGQTYGVSTTAVLSTRTPKFEKPLPRPVKKSDAKDLI 131

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             + L + HE  WI+ARN A++ LLYGCGLRISEALS+T       +  L+I GKG+K R
Sbjct: 132 KQIDLQSEHE--WINARNVAVITLLYGCGLRISEALSITFDKTPLPE-VLKIIGKGNKER 188

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVP+LP  + A+  Y   CP+    N +L  F+G RG PLN  + ++ + Q R  LGLP 
Sbjct: 189 IVPILPVAKAAVKNYLKCCPYSFLPNDRL--FKGARGGPLNQRLIRKVMEQTRIQLGLPS 246

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + T H++RHSFATHLL  GGDLR IQ +LGH  LS+TQ YT V+       +M++Y + H
Sbjct: 247 TATPHSMRHSFATHLLEAGGDLRVIQELLGHASLSSTQAYTAVDQTR----LMDVYKKAH 302

Query: 319 P 319
           P
Sbjct: 303 P 303


>gi|260576668|ref|ZP_05844655.1| integrase family protein [Rhodobacter sp. SW2]
 gi|259021153|gb|EEW24462.1| integrase family protein [Rhodobacter sp. SW2]
          Length = 307

 Score =  225 bits (574), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 125/301 (41%), Positives = 173/301 (57%), Gaps = 9/301 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + WL  L    G +  T+ +Y  D   +L FL+ +      +  +  +   ++RA+++  
Sbjct: 14  EAWLTQLRALDGAADHTITAYSADVAGYLSFLSLHRGGTEGLAALTAVPLADLRAWMAHE 73

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + + +  RSL R+LS +K F  +L +R+    + +L+ R  K    LPR L+   A  ++
Sbjct: 74  KGRGLSPRSLARALSAVKGFTGWLAEREGADATAVLSARAPKFRRKLPRPLSVDAAADVL 133

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D V         WI AR++A++ LLYGCGLRISEAL LT          LRI GKG K R
Sbjct: 134 DRV--GDQSLEPWIAARDAAVVTLLYGCGLRISEALGLT-GATHPLPEVLRITGKGGKQR 190

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VP+LP+ R A+  Y  LCPF+L      PLFRG RG  LNP      + + R  LGLP 
Sbjct: 191 LVPVLPAARAAVARYVSLCPFELAATG--PLFRGARGGALNPRQIALVMEKTRAQLGLPA 248

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           S T H LRHSFATHLLS GGDLR+IQ +LGH  LSTTQ YT V+++     +ME+YD+ H
Sbjct: 249 SATPHALRHSFATHLLSAGGDLRAIQELLGHASLSTTQGYTAVDTQR----LMEVYDKAH 304

Query: 319 P 319
           P
Sbjct: 305 P 305


>gi|307295097|ref|ZP_07574939.1| integrase family protein [Sphingobium chlorophenolicum L-1]
 gi|306879571|gb|EFN10789.1| integrase family protein [Sphingobium chlorophenolicum L-1]
          Length = 298

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 119/301 (39%), Positives = 179/301 (59%), Gaps = 13/301 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + W ++L ++R  S  T+++Y     + + FL  +  E +T   +  +   ++RAF++ R
Sbjct: 9   EQWRRHLALDRRRSVHTVRAYVATAERLVAFLEEHRGEAVTAAMLAGIEQADLRAFLTVR 68

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R   IG+ S  R LS ++ FL+++       ++ +  ++  +    LPR ++  +A+ L 
Sbjct: 69  RMDGIGNVSAARELSAVRGFLRFVGG----EDARVPMLKGPRVKRGLPRPVSPDEAVALA 124

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            ++   T+ E +WI AR+ A+L LLYG GLRI EA+ LT   ++    TLR+ GK  K R
Sbjct: 125 GDIA-ETARE-EWIGARDWAVLLLLYGAGLRIGEAMGLT-GAVLPLGETLRVTGKRGKTR 181

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVPLLP VR AI  Y  LCPF    +   PLFRG RG PL+P + +R ++  R  LGL  
Sbjct: 182 IVPLLPQVRSAIDAYVALCPFGAERDA--PLFRGARGGPLSPALIRRAVQGARGRLGLSD 239

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
            TT H LRHSFATHLL  G DLRS+Q +LGH  LS+TQIYT+V++ +    +++IY   H
Sbjct: 240 RTTPHALRHSFATHLLGRGADLRSLQELLGHASLSSTQIYTHVDAAH----LLDIYRNAH 295

Query: 319 P 319
           P
Sbjct: 296 P 296


>gi|254294584|ref|YP_003060607.1| integrase family protein [Hirschia baltica ATCC 49814]
 gi|254043115|gb|ACT59910.1| integrase family protein [Hirschia baltica ATCC 49814]
          Length = 318

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 124/300 (41%), Positives = 191/300 (63%), Gaps = 10/300 (3%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++++L  ER +S+ T+  Y  D   FL FL  +   +  +  +  L+ +++RA+++ RR 
Sbjct: 26  FVEHLTHERRMSEHTIDGYRRDVGNFLGFLVNHLGGEAHVNDLVNLTPSDVRAWLAFRRA 85

Query: 81  -QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +   S+ R+LS +++F KYL ++     + I  ++  K+   LPR ++++ A  L+ 
Sbjct: 86  NDDLQATSISRALSAVRAFFKYLDRQLDKPNARIQMVKAPKRPQRLPRPVSQEIAKNLLK 145

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            V         WI AR++A++ L+YG GLRISEALSLT  ++   +  LRIQGKG+K+R+
Sbjct: 146 EV--ENQDVEPWIAARDAAMVALMYGAGLRISEALSLTDADV-PARDILRIQGKGNKVRL 202

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPL+P+VR A+  YY+  PF L+ + + PLFRG++GK LNP + Q+ I +LR  +GLP +
Sbjct: 203 VPLIPAVRDALNVYYEKRPF-LS-DEEGPLFRGVKGKKLNPRIIQKLIEKLRISMGLPDT 260

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T H LRHSFATHLL+NG DLRSIQ++LGH  LS+TQIYT V +    D +  I+   HP
Sbjct: 261 ATPHALRHSFATHLLANGADLRSIQTLLGHASLSSTQIYTGVEA----DRLKAIHKAAHP 316


>gi|254417725|ref|ZP_05031449.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
 gi|196183902|gb|EDX78878.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
          Length = 309

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 130/301 (43%), Positives = 178/301 (59%), Gaps = 10/301 (3%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL++L  ER LS  TL++Y    R ++ FL  +  E ++++ +  ++  E+RA +++RR+
Sbjct: 15  WLEHLAHERRLSPRTLEAYGHIGRLYVAFLERHRGEALSLKGLGTVTAAEVRAHMAERRS 74

Query: 81  --QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +  RSL +SLS I+ F  +L +R  T    +  +R  +   SLPR + E QA  L+
Sbjct: 75  GDHPLAARSLSQSLSAIRGFHAFLDRRLDTPAPQLALVRGPRIKPSLPRPVTEDQARGLL 134

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                    E  W  AR+ A+L LLYGCGLRISE LSLT  +    + TLR+ GKG K R
Sbjct: 135 AEPNADPDAE-PWEAARDRAVLTLLYGCGLRISEGLSLTRADAPLGE-TLRVLGKGSKTR 192

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVP+LP+VR A+  Y  L PF L  +  L  FR  RG PL+P   Q  +++LR  LGLP 
Sbjct: 193 IVPVLPAVRAAVDAYLALQPFPLQPSDAL--FRARRGGPLSPRHVQASVQRLRGRLGLPE 250

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
            TT H LRHSFATHLL  G DLRSIQ +LGH  LSTTQ YT V+++     ++  Y   H
Sbjct: 251 RTTPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQKYTGVDAER----LLNAYAAAH 306

Query: 319 P 319
           P
Sbjct: 307 P 307


>gi|294012827|ref|YP_003546287.1| integrase/recombinase XerC [Sphingobium japonicum UT26S]
 gi|292676157|dbj|BAI97675.1| integrase/recombinase XerC [Sphingobium japonicum UT26S]
          Length = 298

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 119/301 (39%), Positives = 179/301 (59%), Gaps = 13/301 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + W ++L ++R  S  T+++Y     + L FL  +  E  T   +  +   ++RAF++ R
Sbjct: 9   EQWRRHLALDRRRSVHTVRAYVATAERLLAFLEEHRGEAATAAMLAGIEQADLRAFLTVR 68

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R   IG+ S  R LS ++ FL+++       ++ +  ++  +    LPR ++  +A+ L 
Sbjct: 69  RMDGIGNVSAARELSAVRGFLRFVGG----EDARVPMLKGPRVKRGLPRPVSPDEAVALA 124

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            ++   T+ E +WI AR+ A+L LLYG GLRI EA++LT   ++    TLR+ GK  K R
Sbjct: 125 GDIA-ETARE-EWIGARDWAVLLLLYGAGLRIGEAMALT-GAVLPLGETLRVTGKRGKTR 181

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVPLLP VRKA+  Y  LCPF    +   PLFRG RG PL+P + +R ++  R  LGL  
Sbjct: 182 IVPLLPQVRKAMEAYVALCPFGQEKDA--PLFRGARGGPLSPALIRRAVQGARGRLGLSD 239

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
            TT H LRHSFATHLL  G DLRS+Q +LGH  LS+TQIYT V++ +    ++++Y   H
Sbjct: 240 RTTPHALRHSFATHLLGRGADLRSLQELLGHASLSSTQIYTQVDAAH----LLDVYRNAH 295

Query: 319 P 319
           P
Sbjct: 296 P 296


>gi|220920293|ref|YP_002495594.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|259710433|sp|B8I9N8|XERC_METNO RecName: Full=Tyrosine recombinase xerC
 gi|219944899|gb|ACL55291.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 322

 Score =  223 bits (567), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 121/308 (39%), Positives = 178/308 (57%), Gaps = 8/308 (2%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L +    WL  L+ ER  S+ T+++Y  D RQFL  LA  +     I  +  L   ++R
Sbjct: 15  DLREAAAAWLAVLKTERRFSENTVEAYGRDLRQFLAHLA-RSGAAPDIPALVALKPRDLR 73

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           AF++ RR + +  RSL R+L+ ++SF ++L +    T S +  +R+ K    LPR L   
Sbjct: 74  AFMAARRAEGVSGRSLMRALAALRSFARHLDREGHGTVSALSAVRSPKVERRLPRPLPVA 133

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQ 191
            A+ +    +        W+ AR++A+L LLYG GLRI EAL +  ++  + D  TL I 
Sbjct: 134 AAVAMASPDIRAGEDRPDWVLARDAAVLALLYGAGLRIGEALGIRRKDAPVGDIDTLTIL 193

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG K R+VP++  V+ A+ +Y  +CP  L  +   PLF G +G PL+P + Q  +  LR
Sbjct: 194 GKGQKTRMVPVIAPVQAAVADYLAVCPHPLPPDG--PLFVGQKGGPLSPRIVQLAVASLR 251

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             LGLP S T H LRHSFATHLL+  GDLR+IQ +LGH  L+TTQ+YT V+S      ++
Sbjct: 252 GALGLPDSATPHALRHSFATHLLARQGDLRAIQDLLGHASLATTQVYTKVDSAR----LL 307

Query: 312 EIYDQTHP 319
             +D  HP
Sbjct: 308 SAFDAAHP 315


>gi|300024727|ref|YP_003757338.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526548|gb|ADJ25017.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888]
          Length = 327

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 130/308 (42%), Positives = 185/308 (60%), Gaps = 10/308 (3%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L +  ++WL +L  ERG S  T ++Y  D  QFL FL  +      +  + ++     R
Sbjct: 24  DLKRAVEDWLAHLINERGQSAATREAYARDVTQFLAFLKTHLGRAPCLGDLSRVDTKVFR 83

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           AF++ RR   +  RSL RSLS +++F ++L++        +L +   K  +S+P+ L   
Sbjct: 84  AFLAHRRKSDVVSRSLARSLSSLRTFFRWLEREGRLQNRAVLQVALPKIPHSVPKPLTVD 143

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQ 191
            A  LV           +WI+AR++A+L LLYG GLRISEALSLTP +  ++ +  + I 
Sbjct: 144 GAAELVAT---KNDDRAEWINARDTAVLLLLYGAGLRISEALSLTPNSAPLNGRDVMHIT 200

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG K R+VP LP + +AI +Y  LCPF L+ +   PLF G RG PL+P + Q  + ++R
Sbjct: 201 GKGGKDRLVPALPIISEAIAKYMRLCPFPLSGDG--PLFLGARGGPLSPRLIQLAMARMR 258

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R LGLP + T H LRHSFATHLLS G DLR IQ +LGH  LSTTQ+YT V+     D ++
Sbjct: 259 RELGLPETATPHALRHSFATHLLSAGADLRQIQELLGHASLSTTQVYTEVDR----DRLL 314

Query: 312 EIYDQTHP 319
            +YDQ HP
Sbjct: 315 SVYDQAHP 322


>gi|163792312|ref|ZP_02186289.1| Integrase [alpha proteobacterium BAL199]
 gi|159182017|gb|EDP66526.1| Integrase [alpha proteobacterium BAL199]
          Length = 323

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 117/300 (39%), Positives = 183/300 (61%), Gaps = 9/300 (3%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +W + L+ E+ +S  TL +Y  D   F+ FLA +  + + +  +  L   + RA++++R 
Sbjct: 28  DWREWLKSEKRVSPHTLAAYGRDLGGFVNFLAGHLGDTVNLSALGTLQPADFRAWLARRA 87

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +   S  R+LS I+ F ++L++R + + + +  +R  +   S+P+AL   +A   ++
Sbjct: 88  GGGLEKSSTARALSTIRGFFRFLERRGLASNAAVGVVRGPRVPRSIPKALTVDEARDALE 147

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           +V   T  +  WI AR+SA+L LLYGCGLR+ EAL L  + ++    TL I GKG K R+
Sbjct: 148 SVGELT--DEPWIAARDSAVLTLLYGCGLRVGEALDLN-RRVVPLSDTLTITGKGGKARM 204

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VP+LP VR+A+ +Y + CP+ L  +   PLF G+RG  L     Q+ I+ LR +LGLP +
Sbjct: 205 VPVLPVVRRAVADYLERCPYRLGPDD--PLFVGVRGGRLGARRVQQSIQTLRCWLGLPET 262

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ YT V++      +++++   HP
Sbjct: 263 ATPHALRHSFATHLLAGGGDLRAIQELLGHASLSTTQRYTEVDAAR----LLDVHRSAHP 318


>gi|144898915|emb|CAM75779.1| Tyrosine recombinase xerC [Magnetospirillum gryphiswaldense MSR-1]
          Length = 314

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 121/300 (40%), Positives = 168/300 (56%), Gaps = 9/300 (3%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            W   L  E+  S  TL  Y  D   F  FL  +   +  +  + QL   + RAF++ R+
Sbjct: 20  QWRDWLAGEKRSSPHTLDGYARDVSAFTTFLLGHLGGEADLAALGQLQPADFRAFLAARQ 79

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +G  S+ R +S ++ F KYL +  +     I  +++ +   SLP+ L  + A+  + 
Sbjct: 80  ADGLGRSSVARLMSSLRGFFKYLDRHDLVHNPAINAVKSPRPPKSLPKPLAAEDAIEALS 139

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                  H+  W+ AR+ A+  LLYGCGLR+ EAL+L  ++I    + + I GKG K R+
Sbjct: 140 TA--GELHDEPWLAARDVALFTLLYGCGLRLGEALALQKRDIPAGDA-MTITGKGRKQRL 196

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VP+LP VR+AI EY  LCP  L  +   PLF G RG  LNPGV QR +R+LR  +GLP +
Sbjct: 197 VPVLPIVRQAIGEYVTLCPHPLAADG--PLFVGARGGLLNPGVVQRQMRRLRALMGLPDT 254

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ YT V+       +   Y   HP
Sbjct: 255 ATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQRYTQVDEAR----LTRAYRDAHP 310


>gi|94495392|ref|ZP_01301972.1| phage integrase [Sphingomonas sp. SKA58]
 gi|94424780|gb|EAT09801.1| phage integrase [Sphingomonas sp. SKA58]
          Length = 312

 Score =  218 bits (556), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 117/299 (39%), Positives = 174/299 (58%), Gaps = 13/299 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W  +L ++R  S  T+++Y+    + + FL  +  E +T   +  L   ++RAF++ RR 
Sbjct: 25  WRAHLALDRRRSVHTVRAYQATAERLVAFLEQHRGEAVTQAMLASLEQADLRAFLTSRRM 84

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             IG+ S  R LS ++ FL+++       ++    ++  +    LPR ++  +A+ L  +
Sbjct: 85  DGIGNLSAARELSAVRGFLRFVGG----EDARPPRLKGPRVKRGLPRPVSPDEAMALAAD 140

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +   T+ E  WI AR+ A+L LLYG GLRI EA+ LT   +     TLR+ GK  K R+V
Sbjct: 141 IA-ETARE-GWIGARDWAVLLLLYGAGLRIGEAMGLT-GAVWPLGDTLRVTGKRGKTRLV 197

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           PLLP +R AI  Y   CP+ L  +   PLFRG RG PL+P + +R ++  R  LGL   T
Sbjct: 198 PLLPQLRAAIESYVAACPYPLERDA--PLFRGARGGPLSPALIRRAVQGARGRLGLSERT 255

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           T H LRHSFATHLL  G DLRS+Q +LGH  LS+TQIYT V++ +    +++IY   HP
Sbjct: 256 TPHALRHSFATHLLGRGADLRSLQELLGHASLSSTQIYTQVDAAH----LLDIYRNAHP 310


>gi|197106796|ref|YP_002132173.1| integrase/recombinase XerC [Phenylobacterium zucineum HLK1]
 gi|196480216|gb|ACG79744.1| integrase/recombinase XerC [Phenylobacterium zucineum HLK1]
          Length = 308

 Score =  218 bits (555), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 125/288 (43%), Positives = 173/288 (60%), Gaps = 8/288 (2%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           R  WL  LE ER  S  TL++Y     ++L FL  +  E ++ + +  ++  E+RA+++ 
Sbjct: 11  RAAWLGRLEHERRASPRTLEAYGFVVARYLAFLERHRGEALSAKDLGSVTAGEVRAWLAH 70

Query: 78  RRTQK--IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            R+ +  +  RSL ++LS I++F ++L +R     + +  +R  +     PR ++E QA+
Sbjct: 71  LRSGETPLSPRSLSQALSAIRTFHRFLDRRLEIPNAAVGLVRGPRVKPGAPRPVSEDQAI 130

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKG 194
            L+         E  W  AR+ A+L LLYGCGLRISEALSL   +  + +Q  LRI GKG
Sbjct: 131 GLIAEPAFDPDRE-GWEAARDQAVLTLLYGCGLRISEALSLRRSDAPLPEQ--LRITGKG 187

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K RIVP+LP+VR+A+  Y    PF L  +   PLFR  RG PL+P   Q  ++QLR  L
Sbjct: 188 AKTRIVPVLPAVREAVDAYLTQVPFGLAPDE--PLFRAKRGGPLSPRHVQATVQQLRGRL 245

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           GLP S T H LRHSFATHLL  G DLRSIQ +LGH  LSTTQ YT V+
Sbjct: 246 GLPASATPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQRYTEVD 293


>gi|114798167|ref|YP_761981.1| putative tyrosine recombinase XerC [Hyphomonas neptunium ATCC
           15444]
 gi|114738341|gb|ABI76466.1| putative tyrosine recombinase XerC [Hyphomonas neptunium ATCC
           15444]
          Length = 299

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 120/299 (40%), Positives = 184/299 (61%), Gaps = 8/299 (2%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L  ER ++  T+++Y  D   FL FL  +   + +   +  +   +IRA++++RR 
Sbjct: 7   FLDYLTRERRMATKTVEAYGSDLSFFLAFLRVHMGAEPSPALLADVRARDIRAYLAERRR 66

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + + D ++ R LS IK+  ++L +      + +  ++  ++   LPR ++   A  L+  
Sbjct: 67  EGLSDATVARILSSIKALYRWLDRAHGVGNAEVGYLQGPRRPQRLPRPVSIDAAKDLISE 126

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                  E  WI AR++A+L LLYG GLRISEALSLT  ++   +  LRI+GKG K+RIV
Sbjct: 127 AENEPDQE-PWIGARDAAVLSLLYGGGLRISEALSLTGADVPAPER-LRIKGKGGKVRIV 184

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           PL+P+VR AI  Y D+CP+ L  +   PLFRG +G  LNP + Q  ++++R YLGLP + 
Sbjct: 185 PLIPAVRDAIHVYADICPWALTRDK--PLFRGAKGGALNPRLIQGLMQRMRAYLGLPDTA 242

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           T H LRH+FATHLL+NG DLR+IQ++LGH  LSTTQ+YT ++S      + E++   HP
Sbjct: 243 TPHALRHAFATHLLANGADLRAIQTLLGHASLSTTQVYTGIDSSR----LREVHAAAHP 297


>gi|296532590|ref|ZP_06895295.1| tyrosine recombinase XerC [Roseomonas cervicalis ATCC 49957]
 gi|296267081|gb|EFH13001.1| tyrosine recombinase XerC [Roseomonas cervicalis ATCC 49957]
          Length = 307

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 124/306 (40%), Positives = 175/306 (57%), Gaps = 10/306 (3%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+ R  WL  LE ER  S+ TL +Y  D  +FL FL  +   +     ++ L   ++RAF
Sbjct: 8   LEARALWLDWLEKERRASRHTLAAYGADLAEFLGFLTRHLGAEPDFAALQALRPADLRAF 67

Query: 75  ISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++R  +  +G+ +  R L+ I+ FL++L KR       I  +R  K     PR L   Q
Sbjct: 68  LAERAMRDGVGNATRARQLAAIRGFLRFLAKRHGLVPQAIAGLRGPKVVPPAPRPLTPDQ 127

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           AL +  +    +   +  +  R+SA+  LLYGCGLRISEAL+L   +     + L+++GK
Sbjct: 128 ALDVTRDA--GSVENSTVLALRDSALFTLLYGCGLRISEALALNLADAPRAGAGLKVRGK 185

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GDK R+VP+LP+V +AI  Y  L           PLF G RG  L+ G+ QR +R  RR 
Sbjct: 186 GDKERVVPVLPAVEQAIAAYLRL---RGGGEPDAPLFLGARGGRLDAGMAQRALRNYRRL 242

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +GLP S T H LRHSFATHLL+ G DLRSIQ +LGH  LSTTQ YT+V+S      ++E 
Sbjct: 243 VGLPESATPHALRHSFATHLLTAGADLRSIQELLGHASLSTTQRYTSVDSAR----LLET 298

Query: 314 YDQTHP 319
           + + HP
Sbjct: 299 WQKAHP 304


>gi|170741374|ref|YP_001770029.1| integrase family protein [Methylobacterium sp. 4-46]
 gi|259710434|sp|B0UNY7|XERC_METS4 RecName: Full=Tyrosine recombinase xerC
 gi|168195648|gb|ACA17595.1| integrase family protein [Methylobacterium sp. 4-46]
          Length = 320

 Score =  216 bits (550), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 127/304 (41%), Positives = 175/304 (57%), Gaps = 14/304 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +WL  L  ER  S  T+++Y  D RQFL   A    +   I ++  L   ++RAF++ RR
Sbjct: 22  SWLTLLARERRFSPNTVEAYARDLRQFLAHRARAGTQP-DIPSLVALKPRDLRAFMAARR 80

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + IG RSL R+L+ ++SF ++L++    T S +  +R+ K    LPR L    A+ L  
Sbjct: 81  AEGIGGRSLMRALASLRSFARHLEREGHGTVSALSAVRSPKVERRLPRPLPVAAAVALAS 140

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL----TPQNIMDDQSTLRIQGKGD 195
             +        W+ AR++A+L LLYG GLRI EAL L     P   +D   TL I GKG 
Sbjct: 141 PDIRAGEDRPDWVLARDAAVLALLYGAGLRIGEALGLRRKDAPVGGLD---TLTIVGKGQ 197

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R+VP++  V+ A+ EY   CP+ L  +   PLF G +G PL+P V Q  +  LR  LG
Sbjct: 198 KTRMVPVIAPVQAALAEYLAACPYALAPDG--PLFVGQKGGPLSPRVVQLAVASLRGALG 255

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           LP S T H LRHSFATHLL+  GDLR+IQ +LGH  L+TTQIYT V+S      +M  ++
Sbjct: 256 LPDSATPHALRHSFATHLLARQGDLRAIQDLLGHASLATTQIYTKVDSAR----LMSAFE 311

Query: 316 QTHP 319
             HP
Sbjct: 312 AAHP 315


>gi|114328726|ref|YP_745883.1| site-specific tyrosine recombinase XerC [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316900|gb|ABI62960.1| integrase/recombinase (XerC/CodV family) [Granulibacter
           bethesdensis CGDNIH1]
          Length = 300

 Score =  216 bits (549), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 116/304 (38%), Positives = 174/304 (57%), Gaps = 11/304 (3%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           + R++W+  L  E+  + LT ++Y  D   FL FLA +   +  +  + +L  ++ RA++
Sbjct: 5   QARRDWIDWLRDEKRAAPLTCRAYGDDVAAFLGFLATHQGAEPDMAMLGRLGLSDFRAWL 64

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +  G+ +  R L+ I+SF  +L++R     S +  +R  K    LPRAL++ QAL
Sbjct: 65  ASEAVKGAGNATRARHLASIRSFFHFLRQRHALENSALPLLRTPKAKPPLPRALDQTQAL 124

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
               ++    + E  +  AR++A+  LLYGCGLR+ EAL L   +   D  TLRI GKG 
Sbjct: 125 AAARDI--GEASENPFTQARDTALFALLYGCGLRLGEALGLMVGDSQHD--TLRITGKGG 180

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           + R+VP++PSVR ++ ++    P         PLF G+RG  LNPGV QR +RQ R    
Sbjct: 181 RQRMVPVIPSVRTSLSDWLRFHPVP---EASAPLFVGVRGARLNPGVAQRTLRQFRTLYN 237

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           LP   T H LRHSFATHLL+ G DLR+IQ +LGH  LSTTQ YT V+       ++ ++ 
Sbjct: 238 LPEHATPHALRHSFATHLLAAGADLRAIQDLLGHASLSTTQRYTQVDQAQ----LLAVWQ 293

Query: 316 QTHP 319
           + HP
Sbjct: 294 KAHP 297


>gi|329890948|ref|ZP_08269291.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568]
 gi|328846249|gb|EGF95813.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568]
          Length = 304

 Score =  215 bits (548), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 128/301 (42%), Positives = 174/301 (57%), Gaps = 10/301 (3%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL++L  ER LS  TL++Y    R +L FL  +     +   +  ++  E RA +++RR+
Sbjct: 10  WLEHLAHERRLSPRTLEAYGHIGRLYLAFLERHRGGPQSAADLGSVTAAEARAHLAERRS 69

Query: 81  --QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +  RSL ++L+ I+ F  +L +R       +  +R  K   SLPR ++E QA  L+
Sbjct: 70  GDRPLNARSLSQTLAAIRGFHAFLDRRLGVATPQLALVRGPKVKPSLPRPVSEDQAKGLL 129

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                    E  W  AR+ A+L LLYGCGLRISEALSL   +    +S LRI GKGDK R
Sbjct: 130 HEPEADPDME-PWEAARDRAVLTLLYGCGLRISEALSLKRSDAPLPES-LRITGKGDKTR 187

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VP+LP VR+A   Y  L PF ++ +  L  FR  RG PL+    Q  +++LR  LGLP 
Sbjct: 188 MVPVLPEVREATQAYLALQPFVIDADQAL--FRARRGGPLSARHVQATVQRLRGRLGLPA 245

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           S T H LRHSFATHLL  G DLRSIQ +LGH  LSTTQ YT V++      ++  Y Q H
Sbjct: 246 SATPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQKYTQVDAAR----LLAAYAQAH 301

Query: 319 P 319
           P
Sbjct: 302 P 302


>gi|218513302|ref|ZP_03510142.1| site-specific tyrosine recombinase XerC [Rhizobium etli 8C-3]
          Length = 210

 Score =  215 bits (548), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 104/216 (48%), Positives = 144/216 (66%), Gaps = 8/216 (3%)

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           K+ +   +    +R+ K+  SLP+ L++ QA+T+V N      H+  WI AR++A++ LL
Sbjct: 1   KKGLVNAAGAAAIRSPKQPKSLPKPLSDTQAITVVSNEA--QLHDEPWIAARDAAVMTLL 58

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
           YGCGLRISEAL L P ++    +TLRI GKG+K R+VPLLP V  A+ +Y  LCP+  +L
Sbjct: 59  YGCGLRISEALDLVPADLPKGAATLRITGKGNKTRLVPLLPVVFDAVEKYRALCPY--HL 116

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
               PLFRG RG  L   + QR +++LR   GLP + T H LRHSFATHLL+ GGDLR+I
Sbjct: 117 ENDAPLFRGARGGKLQAAIIQRAMQKLRSAFGLPETATPHALRHSFATHLLAGGGDLRTI 176

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           Q +LGH  LSTTQ+YT V++      ++E+YD+ HP
Sbjct: 177 QELLGHASLSTTQVYTGVDASR----LLEVYDRAHP 208


>gi|157804202|ref|YP_001492751.1| site-specific tyrosine recombinase XerC [Rickettsia canadensis str.
           McKiel]
 gi|166918899|sp|A8F033|XERC_RICCK RecName: Full=Tyrosine recombinase xerC
 gi|157785465|gb|ABV73966.1| tyrosine recombinase [Rickettsia canadensis str. McKiel]
          Length = 305

 Score =  215 bits (547), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 120/304 (39%), Positives = 181/304 (59%), Gaps = 19/304 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W Q L +++  S  T+ SY  D + FL F+ +Y  + +TI  I+      IR++++KR  
Sbjct: 13  WQQYLILQKNYSHHTVVSYNNDLKHFLEFMHYYNSDLVTINHIKTADIRLIRSWLAKRNC 72

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                 S+ R LS +K+F K+L+K        I ++++ KK+  LP++L+E       D+
Sbjct: 73  NNFTTSSISRGLSAVKNFYKFLEKTTQLNSHIIFSIKSPKKTKLLPKSLSE-------DD 125

Query: 141 VLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           V++   H       KW++ RN A+L L+Y  GLRISEALS+T  + + +   +RI GKG 
Sbjct: 126 VVISLKHIEEYGNVKWVELRNKALLVLIYATGLRISEALSITKLH-LQNLEFIRIIGKGS 184

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RI+P LP V+  I +Y ++ P+ L  N   P+FRG +GK L P VF R + +L+R+ G
Sbjct: 185 KERIIPWLPIVKNLITQYLEILPYKLGEN--EPIFRGKQGKKLQPTVFNRELIKLKRFYG 242

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           LP   TAH+ RHSFA+HLL +G DLRSIQ +LGH  LSTTQ YT  + K+    ++ +Y 
Sbjct: 243 LPEHLTAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTSIKH----LVSVYT 298

Query: 316 QTHP 319
             +P
Sbjct: 299 SAYP 302


>gi|51473985|ref|YP_067742.1| site-specific tyrosine recombinase XerC [Rickettsia typhi str.
           Wilmington]
 gi|81389926|sp|Q68VT2|XERC_RICTY RecName: Full=Tyrosine recombinase xerC
 gi|51460297|gb|AAU04260.1| DNA integrase/recombinase XerC [Rickettsia typhi str. Wilmington]
          Length = 305

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 124/312 (39%), Positives = 186/312 (59%), Gaps = 22/312 (7%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL+K+   W + L ++R  S  T+ +Y  D + FL F+ +Y  E +TI  I+ +    IR
Sbjct: 8   ELIKQ---WQKYLILQRNYSNNTVIAYNNDLKHFLEFMNYYNSELVTINHIKTVDIRLIR 64

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           ++++KR+ +     S+ R LS +K+F K+L+K  +     I ++++ KK+  LP+AL+  
Sbjct: 65  SWLAKRKYENFTASSIARGLSTVKNFYKFLEKTILLNSHIIFSIKSPKKAKLLPKALS-- 122

Query: 133 QALTLVDNVLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
                VD+VL+   H       KW++ RN A+L L+Y  GLRISEALS+T  + + +   
Sbjct: 123 -----VDDVLISLEHIEGYGNVKWVELRNKALLVLIYAAGLRISEALSITKLH-LQNLEF 176

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           ++I GKG K RI+P LP  R  I +Y  + P+ L+ N   P+FRG  GK L P VF R +
Sbjct: 177 IKIIGKGSKERIIPWLPFARNLITKYLGILPYKLDEN--EPIFRGKHGKKLQPSVFNREL 234

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +L+R  GLP   TAH+ RHSFA+HLL  G DLRSIQ +LGH  LSTTQ YT  + K+  
Sbjct: 235 IKLKRVYGLPEYLTAHSFRHSFASHLLEYGADLRSIQELLGHKSLSTTQKYTQTSIKH-- 292

Query: 308 DWMMEIYDQTHP 319
             +  +Y+  +P
Sbjct: 293 --LEAVYNTAYP 302


>gi|170747361|ref|YP_001753621.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
 gi|170653883|gb|ACB22938.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
          Length = 326

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 122/300 (40%), Positives = 174/300 (58%), Gaps = 8/300 (2%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W++ L  ER +S  T+++Y  D RQFL  LA   +   TI  +  L   +IR F++ RR 
Sbjct: 30  WIEALARERRMSSNTVEAYGRDLRQFLHHLA-SRQGTPTIPMLIGLKVRDIRGFMAARRA 88

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            ++  RSL R L+G++SF ++L++    T S +  +R+ K    LPR L    A+ L D 
Sbjct: 89  DEVSGRSLMRMLAGLRSFARFLEREGFGTVSALGGVRSPKVPRRLPRPLPVSAAVALTDT 148

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRI 199
            +        W+ AR++A+L LLYG GLRISEAL L+ ++  +     + + GKG K R+
Sbjct: 149 AIRAGEEREPWVLARDAAVLALLYGAGLRISEALGLSRRDAPLPGVDQVTVLGKGGKQRM 208

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VP+LP V +A+ +Y   CP  L     L  F G RG PL+P + Q  + + R  LGLP S
Sbjct: 209 VPILPVVAQAVADYVAACPLPLPPEGPL--FLGARGGPLSPRIIQYTVARARGALGLPES 266

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T H LRHSFATHLL+  G+LR+IQ +LGH  LSTTQ+YT V++      +M  Y   HP
Sbjct: 267 ATPHALRHSFATHLLARQGELRAIQELLGHASLSTTQLYTQVDAAR----LMSAYAAAHP 322


>gi|326402863|ref|YP_004282944.1| tyrosine recombinase XerC [Acidiphilium multivorum AIU301]
 gi|325049724|dbj|BAJ80062.1| tyrosine recombinase XerC [Acidiphilium multivorum AIU301]
          Length = 313

 Score =  213 bits (541), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 118/302 (39%), Positives = 170/302 (56%), Gaps = 9/302 (2%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           R  +L  L  ER  + LT+ +Y  D  +FL F+  +   + T   +  LS  + RA+++K
Sbjct: 17  RVEFLDFLAGERRAAALTVSTYGADLAEFLGFVTRHIGAEPTGADLAALSLADFRAWLAK 76

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             +  +G+ +  + LS ++SF ++L++R          +R  K    LPRAL    A  +
Sbjct: 77  AASDGVGNATRAKKLSAVRSFFRWLRQRHGMINEAPGLLRTPKSRRPLPRALTAPDAAAV 136

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           VD+  L     +  + AR++A++ LLYG GLRI EAL L   ++  + + L ++GKG + 
Sbjct: 137 VDS--LGDDAASPALAARDTALMALLYGAGLRIHEALGLNIGDLPPEGAPLSVRGKGGRQ 194

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RIVPLLP +R+ I  +    P         PLF G RG  LNPGV QR +R  RR  GLP
Sbjct: 195 RIVPLLPVLRREIASWLRHHPAP---TPDAPLFLGARGARLNPGVVQRRLRDFRRLNGLP 251

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T H LRHSFATHLL+NG DLR+IQ +LGH  LSTTQ YT V++    D +M ++   
Sbjct: 252 EHATPHALRHSFATHLLANGADLRAIQELLGHASLSTTQRYTAVDA----DRLMAVWQAA 307

Query: 318 HP 319
           HP
Sbjct: 308 HP 309


>gi|296446249|ref|ZP_06888196.1| integrase family protein [Methylosinus trichosporium OB3b]
 gi|296256286|gb|EFH03366.1| integrase family protein [Methylosinus trichosporium OB3b]
          Length = 339

 Score =  212 bits (540), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 130/320 (40%), Positives = 184/320 (57%), Gaps = 14/320 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E+ +  Q+WL  L  E+  S+ TL +Y  D R FL FLA +         +  L+  ++R
Sbjct: 30  EIARAAQDWLDYLSGEKRCSRHTLAAYARDARFFLAFLAEHKGAPANAALLGALAPADLR 89

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           AF+++RR Q + +RSL R L+ ++S +++L+KR +        +R  K+ ++LP+AL   
Sbjct: 90  AFMARRRAQGVENRSLLRGLAAVRSLMRFLEKRDLAKTDVFAAIRAPKRPHALPKALGVA 149

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL----TPQNIMDDQSTL 188
            A  LVD           WI AR++A L LLYG GLRISEALS+     P   +D    +
Sbjct: 150 DARELVDPATRAGEAREPWIIARDAAALALLYGAGLRISEALSIDRDAAPIGKID---RV 206

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            I GKG K R+ P++  VR+AI +Y  LCP +L+     PLF G RG  L+P + Q  + 
Sbjct: 207 TIHGKGGKTRVAPIIEPVRRAIEDYIRLCPHELSGG---PLFIGARGGRLSPRILQLAME 263

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           ++R  LGLP S T H LRHSFATHLL  GGDLRSIQ +LGH  LSTTQIY  V+ +    
Sbjct: 264 RMRGALGLPDSATPHALRHSFATHLLGRGGDLRSIQELLGHASLSTTQIYAAVDKQR--- 320

Query: 309 WMMEIYDQTHPSITQKDKKN 328
            ++E Y   HP   + + + 
Sbjct: 321 -LLEAYRSAHPRAGRGESRE 339


>gi|218458541|ref|ZP_03498632.1| site-specific tyrosine recombinase XerC [Rhizobium etli Kim 5]
          Length = 198

 Score =  212 bits (540), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 103/204 (50%), Positives = 140/204 (68%), Gaps = 8/204 (3%)

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +R+ K+  SLP+ L++ QA+T+V N      H+  WI AR++A++ LLYGCGLRISEAL 
Sbjct: 1   IRSPKQPKSLPKPLSDTQAITVVSNEA--QLHDEPWIAARDAAVMTLLYGCGLRISEALD 58

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           L P ++    +TLRI GKG+K R+VPLLP V  A+ +Y  LCP+  +L    PLFRG RG
Sbjct: 59  LVPADLPKGAATLRITGKGNKTRLVPLLPVVFDAVEKYRTLCPY--HLESGAPLFRGARG 116

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             L   + QR +++LR   GLP + T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTT
Sbjct: 117 GKLQAAIIQRAMQKLRSAFGLPETATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTT 176

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHP 319
           Q+YT V++      ++E+YD+ HP
Sbjct: 177 QVYTGVDASR----LLEVYDRAHP 196


>gi|148260195|ref|YP_001234322.1| site-specific tyrosine recombinase XerC [Acidiphilium cryptum JF-5]
 gi|146401876|gb|ABQ30403.1| phage integrase family protein [Acidiphilium cryptum JF-5]
          Length = 313

 Score =  212 bits (539), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 118/302 (39%), Positives = 170/302 (56%), Gaps = 9/302 (2%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           R  +L  L  ER  + LT+ +Y  D  +FL F+  +   + T   +  LS  + RA+++K
Sbjct: 17  RVEFLDFLVGERRAAALTVSTYGADLAEFLGFVTRHIGAEPTGADLAALSLADFRAWLAK 76

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             +  +G+ +  + LS ++SF ++L++R          +R  K    LPRAL    A  +
Sbjct: 77  AASDGVGNATRAKKLSAVRSFFRWLRQRHGMINEAPGLLRTPKSRRPLPRALTAPDAAAV 136

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           VD+  L     +  + AR++A++ LLYG GLRI EAL L   ++  + + L ++GKG + 
Sbjct: 137 VDS--LGDDAASPALAARDTALMALLYGAGLRIHEALGLNIGDLPPEGAPLSVRGKGGRQ 194

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RIVPLLP +R+ I  +    P         PLF G RG  LNPGV QR +R  RR  GLP
Sbjct: 195 RIVPLLPVLRREIASWLRHHPAP---TPDAPLFLGARGARLNPGVVQRRLRDFRRLNGLP 251

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T H LRHSFATHLL+NG DLR+IQ +LGH  LSTTQ YT V++    D +M ++   
Sbjct: 252 EHATPHALRHSFATHLLANGADLRAIQELLGHASLSTTQRYTAVDA----DRLMAVWQAA 307

Query: 318 HP 319
           HP
Sbjct: 308 HP 309


>gi|67459687|ref|YP_247311.1| site-specific tyrosine recombinase XerC [Rickettsia felis
           URRWXCal2]
 gi|75535922|sp|Q4UJZ3|XERC_RICFE RecName: Full=Tyrosine recombinase xerC
 gi|67005220|gb|AAY62146.1| Tyrosine recombinase XerC [Rickettsia felis URRWXCal2]
          Length = 305

 Score =  212 bits (539), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 119/304 (39%), Positives = 179/304 (58%), Gaps = 19/304 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W + L+++R  S  T+ SY  D + FL F+ +Y  E +TI  I+      IR++++KR  
Sbjct: 13  WQKYLDLQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRLIRSWLAKRNC 72

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                 S+ R LS +K+F ++L+K        I ++++ KK+  LP+AL+E       D+
Sbjct: 73  DNFTTSSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSE-------DD 125

Query: 141 VLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           V++   H       KW++ RN A+L L+Y  GLRISEALS+T  + + +   +RI GKG 
Sbjct: 126 VVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLH-LQNLEFIRIIGKGS 184

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RI+P LP  +  I +Y ++ P+ L  N   P+FRG +GK L P VF R + +L+ + G
Sbjct: 185 KERIIPWLPIAKNLITQYLEILPYKLGDN--EPIFRGKQGKKLQPPVFNRELIKLKHFYG 242

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           LP   TAH+ RHSFA+HLL +G DLRSIQ +LGH  LSTTQ YT  + K+    +  +Y 
Sbjct: 243 LPQHLTAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTSIKH----LEAVYT 298

Query: 316 QTHP 319
             +P
Sbjct: 299 TAYP 302


>gi|16124599|ref|NP_419163.1| site-specific tyrosine recombinase XerC [Caulobacter crescentus
           CB15]
 gi|221233288|ref|YP_002515724.1| site-specific tyrosine recombinase XerC [Caulobacter crescentus
           NA1000]
 gi|13421495|gb|AAK22331.1| integrase/recombinase XerC, putative [Caulobacter crescentus CB15]
 gi|220962460|gb|ACL93816.1| integrase/recombinase, XerC-CodV family [Caulobacter crescentus
           NA1000]
          Length = 304

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 123/304 (40%), Positives = 173/304 (56%), Gaps = 16/304 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR- 79
           WL +L +ER  S  T+++Y  +   +L FL  +  E +++  + ++S  ++R +++ RR 
Sbjct: 10  WLDHLTLERRASPRTVRAYGDNVLAYLNFLEAHRGEALSLSALAEISAADLRGYLAWRRQ 69

Query: 80  -TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +  RSL ++LS I++F +YL +R     + +  +R  +    LPR ++E QA  L+
Sbjct: 70  GEHALAPRSLSQALSSIRAFHRYLDQRHGVANAAVDLVRGPRLKIGLPRPVSEDQARDLI 129

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ---STLRIQGKGD 195
                 T  +  W  AR+ A+L LL+GCGLRISEALSL     M D    +TLRI GKG 
Sbjct: 130 TQAAEDTERD-PWETARDEAVLTLLWGCGLRISEALSLR----MSDAPLAATLRITGKGG 184

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RIVP+L +VR AI  Y D  PF  NL     LFR  RG PL+P   Q  ++ LR  LG
Sbjct: 185 KTRIVPVLDAVRDAIEAYLDELPF--NLAPDEALFRAKRGGPLSPRHVQGLVQTLRGRLG 242

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L    T H  RH+FATHLL  G DLR+IQ +LGH  LSTTQ YT V++      ++  Y 
Sbjct: 243 LSDRVTPHAFRHAFATHLLGAGADLRAIQDLLGHASLSTTQRYTQVDAAG----LLAAYQ 298

Query: 316 QTHP 319
             HP
Sbjct: 299 AAHP 302


>gi|157964965|ref|YP_001499789.1| site-specific tyrosine recombinase XerC [Rickettsia massiliae MTU5]
 gi|166918900|sp|A8F2V6|XERC_RICM5 RecName: Full=Tyrosine recombinase xerC
 gi|157844741|gb|ABV85242.1| Tyrosine recombinase XerC [Rickettsia massiliae MTU5]
          Length = 305

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 119/304 (39%), Positives = 178/304 (58%), Gaps = 19/304 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W + L ++R  S  T+ SY  D + FL F+ +Y  E +TI  I+      IR++++KR  
Sbjct: 13  WQKYLVLQRNYSNHTVISYNNDLKHFLEFMNYYNSEFVTINHIKTADIRLIRSWLAKRHC 72

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                 S+ R LS +K+F ++L+K        I ++++ KK+  LP+AL+E       D+
Sbjct: 73  DNFTTSSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSE-------DD 125

Query: 141 VLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           V++   H       KW++ RN A+L L+Y  GLRISEALS+T  + + +   +RI GKG 
Sbjct: 126 VVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLH-LQNLEFIRIIGKGS 184

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RI+P LP  +  I +Y ++ P+ L  N   P+FRG +GK L P VF R + +L+ + G
Sbjct: 185 KERIIPWLPIAKNLITQYLEILPYKLGDN--EPIFRGKQGKKLQPPVFNRELIKLKHFYG 242

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           LP   TAH+ RHSFA+HLL +G DLRSIQ +LGH  LSTTQ YT  + K+    +  +Y 
Sbjct: 243 LPQHLTAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTSIKH----LEAVYT 298

Query: 316 QTHP 319
             +P
Sbjct: 299 TAYP 302


>gi|157829099|ref|YP_001495341.1| site-specific tyrosine recombinase XerC [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165933823|ref|YP_001650612.1| site-specific tyrosine recombinase XerC [Rickettsia rickettsii str.
           Iowa]
 gi|166918901|sp|A8GTV8|XERC_RICRS RecName: Full=Tyrosine recombinase xerC
 gi|189030082|sp|B0BVE6|XERC_RICRO RecName: Full=Tyrosine recombinase xerC
 gi|157801580|gb|ABV76833.1| site-specific tyrosine recombinase XerC [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165908910|gb|ABY73206.1| integrase/recombinase (XerC/CodV family) [Rickettsia rickettsii
           str. Iowa]
          Length = 305

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 118/304 (38%), Positives = 179/304 (58%), Gaps = 19/304 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W + L ++R  S  T+ SY  D + FL F+ +Y  E +TI  I+      IR++++KR  
Sbjct: 13  WQKYLVLQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRLIRSWLAKRNC 72

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                 S+ R LS +K+F ++L+K        I ++++ KK+  LP+AL+E       D+
Sbjct: 73  DNFAASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSE-------DD 125

Query: 141 VLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           V++   H       KW++ RN A+L L+Y  GLRISEALS+T  + + +   +RI GKG 
Sbjct: 126 VVISLEHIEEYGNIKWVELRNKALLVLIYASGLRISEALSITKLH-LQNLEFIRIIGKGS 184

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RI+P LP  +  I +Y ++ P+ L  N   P+FRG +GK L P VF R + +L+ + G
Sbjct: 185 KERIIPWLPIAKNLITQYLEILPYKLGDN--EPIFRGKQGKKLQPPVFNRELIKLKHFYG 242

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           LP   TAH+ RHSFA+HLL +G DLRS+Q++LGH  LSTTQ YT  + K+    +  +Y 
Sbjct: 243 LPQHLTAHSFRHSFASHLLEHGADLRSLQALLGHKSLSTTQNYTKTSIKH----LEAVYT 298

Query: 316 QTHP 319
             +P
Sbjct: 299 TAYP 302


>gi|157827676|ref|YP_001496740.1| site-specific tyrosine recombinase XerC [Rickettsia bellii OSU
           85-389]
 gi|166918898|sp|A8GXV3|XERC_RICB8 RecName: Full=Tyrosine recombinase xerC
 gi|157802980|gb|ABV79703.1| site-specific tyrosine recombinase XerC [Rickettsia bellii OSU
           85-389]
          Length = 305

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 116/299 (38%), Positives = 182/299 (60%), Gaps = 9/299 (3%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W + L +++  S  TL SY  D + FL F+ +Y  + +T+  I+      +R++++KR+ 
Sbjct: 13  WQKYLSLQKNYSNHTLISYNNDLKHFLEFMNYYNSDIVTMDYIKAADIRLMRSWLAKRKC 72

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                 S+ R LS IK+F K+L+K        + ++++ KKS  LP+AL+E++    +D+
Sbjct: 73  DNFVTSSIARGLSAIKNFYKFLEKTAELHNHVVFSIKSPKKSKLLPKALSEEEVNISLDH 132

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +  + +  ++WI+ RN A+L L+Y  GLRISEALS+T  ++ + +  ++I GKG K R++
Sbjct: 133 IEEYGN--SQWIEIRNKALLVLIYASGLRISEALSITKLHLQNLE-FIKIMGKGSKERVI 189

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P L   R  I EY +  P++L  +   P+FRG +GK L P VF R + +L+R+ GLP   
Sbjct: 190 PWLAIARNLITEYLEKLPYELKDD--EPIFRGKQGKKLQPPVFNRELIKLKRFYGLPEHL 247

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           +AH+ RHSFA+HLL NG DLRSIQ +LGH  LSTTQ YT  + K+    +   Y   HP
Sbjct: 248 SAHSFRHSFASHLLENGADLRSIQELLGHKSLSTTQSYTKTSIKH----LETAYVTAHP 302


>gi|238650850|ref|YP_002916705.1| site-specific tyrosine recombinase XerC [Rickettsia peacockii str.
           Rustic]
 gi|259710438|sp|C4K256|XERC_RICPU RecName: Full=Tyrosine recombinase xerC
 gi|238624948|gb|ACR47654.1| site-specific tyrosine recombinase XerC [Rickettsia peacockii str.
           Rustic]
          Length = 305

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 118/304 (38%), Positives = 178/304 (58%), Gaps = 19/304 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W + L ++R  S  T+ SY  D + FL F+ +Y  E +TI  I+      IR++++KR  
Sbjct: 13  WQKYLVLQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRLIRSWLAKRNC 72

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                 S+ R LS +K+F ++L+K        I ++++ KK+  LP+AL+E       D+
Sbjct: 73  DNFTASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSE-------DD 125

Query: 141 VLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           V++   H       KW++ RN A+L L+Y  GLRISEALS+T  + + +   +RI GKG 
Sbjct: 126 VVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLH-LQNLEFIRIIGKGS 184

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RI+P LP  +  I +Y ++ P+ L  N   P+FRG +GK L P VF R + +L+ + G
Sbjct: 185 KERIIPWLPIAKNLITQYLEILPYKLGDN--EPIFRGKQGKELQPSVFNRELIKLKHFYG 242

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           LP   TAH+ RHSFA+HLL +G DLRS+Q +LGH  LSTTQ YT  + K+    +  +Y 
Sbjct: 243 LPQHLTAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTKTSIKH----LEAVYT 298

Query: 316 QTHP 319
             +P
Sbjct: 299 TAYP 302


>gi|229587180|ref|YP_002845681.1| site-specific tyrosine recombinase XerC [Rickettsia africae ESF-5]
 gi|259710437|sp|C3PLU8|XERC_RICAE RecName: Full=Tyrosine recombinase xerC
 gi|228022230|gb|ACP53938.1| Tyrosine recombinase XerC [Rickettsia africae ESF-5]
          Length = 305

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 119/304 (39%), Positives = 178/304 (58%), Gaps = 19/304 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W + L ++R  S  T+ SY  D + FL F+ +Y  E +TI  I+      IR++++KR  
Sbjct: 13  WQKYLVLQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRLIRSWLAKRNC 72

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                 S+ R LS +K+F ++L+K        I ++++ KK+  LP+AL+E       D+
Sbjct: 73  DNFTASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSE-------DD 125

Query: 141 VLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           V++   H       KWI+ RN A+L L+Y  GLRISEALS+T  + + +   +RI GKG 
Sbjct: 126 VVISLEHIEEYGNVKWIELRNKALLVLIYASGLRISEALSITKLH-LQNLEFIRIIGKGS 184

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RI+P LP  +  I +Y ++ P+ L  N   P+FRG +GK L P VF R + +L+ + G
Sbjct: 185 KERIIPWLPIAKNLITQYLEILPYKLGDN--EPIFRGKQGKKLQPPVFNRELIKLKHFYG 242

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           LP   TAH+ RHSFA+HLL +G DLRS+Q +LGH  LSTTQ YT  + K+    +  +Y 
Sbjct: 243 LPQHLTAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQSYTKTSIKH----LEAVYT 298

Query: 316 QTHP 319
             +P
Sbjct: 299 TAYP 302


>gi|91204992|ref|YP_537347.1| site-specific tyrosine recombinase XerC [Rickettsia bellii
           RML369-C]
 gi|122990944|sp|Q1RK56|XERC_RICBR RecName: Full=Tyrosine recombinase xerC
 gi|91068536|gb|ABE04258.1| Tyrosine recombinase XerC [Rickettsia bellii RML369-C]
          Length = 305

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 116/299 (38%), Positives = 182/299 (60%), Gaps = 9/299 (3%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W + L +++  S  TL SY  D + FL F+ +Y  + +T+  I+      +R++++KR+ 
Sbjct: 13  WQKYLSLQKNYSNHTLISYNNDLKHFLEFMNYYNSDIVTMDYIKAADIRLMRSWLAKRKC 72

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                 S+ R LS IK+F K+L+K        + ++++ KKS  LP+AL+E++    +D+
Sbjct: 73  DNFVTSSIARGLSAIKNFYKFLEKTAELHNHVVFSIKSPKKSKLLPKALSEEEVNISLDH 132

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +  + +  ++WI+ RN A+L L+Y  GLRISEALS+T  ++ + +  ++I GKG K R++
Sbjct: 133 IEEYGN--SQWIEIRNKALLVLIYASGLRISEALSITKLHLQNLE-FIKIMGKGSKERVI 189

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P L   R  I EY +  P++L  +   P+FRG +GK L P VF R + +L+R+ GLP   
Sbjct: 190 PWLAIARNLITEYLEKLPYELKDD--EPIFRGKQGKKLQPPVFNRELIKLKRFYGLPEYL 247

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           +AH+ RHSFA+HLL NG DLRSIQ +LGH  LSTTQ YT  + K+    +   Y   HP
Sbjct: 248 SAHSFRHSFASHLLENGADLRSIQELLGHKSLSTTQSYTKTSIKH----LETAYVTAHP 302


>gi|15893191|ref|NP_360905.1| site-specific tyrosine recombinase XerC [Rickettsia conorii str.
           Malish 7]
 gi|34222950|sp|Q92G55|XERC_RICCN RecName: Full=Tyrosine recombinase xerC
 gi|15620404|gb|AAL03806.1| integrase/recombinase [Rickettsia conorii str. Malish 7]
          Length = 305

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 118/304 (38%), Positives = 178/304 (58%), Gaps = 19/304 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W + L ++R  S  T+ SY  D + FL F+ +Y  E +TI  I+      IR++++KR  
Sbjct: 13  WQKYLALQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRLIRSWLAKRNC 72

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                 S+ R LS +K+F ++L+K        I ++++ KK+  LP+AL+E       D+
Sbjct: 73  DNFTASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSE-------DD 125

Query: 141 VLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           V++   H       KW++ RN A+L L+Y  GLRISEALS+T  + + +   +RI GKG 
Sbjct: 126 VVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLH-LQNLEFIRIIGKGS 184

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RI+P LP  +  I +Y ++ P+ L  N   P+FRG +GK L P VF R + +L+ + G
Sbjct: 185 KERIIPWLPIAKNLITQYLEILPYKLGDN--EPIFRGKQGKKLQPPVFNRELIKLKHFYG 242

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           LP   TAH+ RHSFA+HLL +G DLRS+Q +LGH  LSTTQ YT  + K+    +  +Y 
Sbjct: 243 LPQHLTAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTKTSIKH----LEAVYT 298

Query: 316 QTHP 319
             +P
Sbjct: 299 TAYP 302


>gi|239946786|ref|ZP_04698539.1| tyrosine recombinase XerC [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921062|gb|EER21086.1| tyrosine recombinase XerC [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 305

 Score =  209 bits (533), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 119/304 (39%), Positives = 178/304 (58%), Gaps = 19/304 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W + L ++R  S  T+ SY  D + FL F+ +Y  E +TI  I+      IR++++KR  
Sbjct: 13  WQKYLVLQRNCSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRLIRSWLAKRNC 72

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                 S+ R LS +K+F ++L+K        I ++++ KK+  LP+AL+E       D+
Sbjct: 73  NNFTTSSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSE-------DD 125

Query: 141 VLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           V++   H       KW++ RN A+L L+Y  GLRISEALS+T  + + +   +RI GKG 
Sbjct: 126 VVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLH-LQNLEFIRIIGKGS 184

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RI+P LP  +  I +Y ++ P+ L  N   P+FRG +GK L P VF R + +L+ + G
Sbjct: 185 KERIIPWLPITKNLITKYLEILPYKLGDN--EPIFRGKQGKKLQPPVFNRELIKLKHFYG 242

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           LP   TAH+ RHSFA+HLL +G DLRSIQ +LGH  LSTTQ YT  + K+    +  +Y 
Sbjct: 243 LPQHLTAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTSIKH----LEAVYT 298

Query: 316 QTHP 319
             +P
Sbjct: 299 TAYP 302


>gi|34581137|ref|ZP_00142617.1| integrase/recombinase [Rickettsia sibirica 246]
 gi|28262522|gb|EAA26026.1| integrase/recombinase [Rickettsia sibirica 246]
          Length = 305

 Score =  209 bits (533), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 118/304 (38%), Positives = 178/304 (58%), Gaps = 19/304 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W + L ++R  S  T+ SY  D + FL F+ +Y  E +TI  I+      IR++++KR  
Sbjct: 13  WQKYLVLQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRLIRSWLAKRNC 72

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                 S+ R LS +K+F ++L+K        I ++++ KK+  LP+AL+E       D+
Sbjct: 73  DNFTASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSE-------DD 125

Query: 141 VLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           V++   H       KW++ RN A+L L+Y  GLRISEALS+T  + + +   +RI GKG 
Sbjct: 126 VVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLH-LQNLEFIRIIGKGS 184

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RI+P LP  +  I +Y ++ P+ L  N   P+FRG +GK L P VF R + +L+ + G
Sbjct: 185 KERIIPWLPIAKNLITQYLEILPYKLGDN--EPIFRGKQGKKLQPPVFNRELIKLKHFYG 242

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           LP   TAH+ RHSFA+HLL +G DLRS+Q +LGH  LSTTQ YT  + K+    +  +Y 
Sbjct: 243 LPQHLTAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTKTSIKH----LEAVYT 298

Query: 316 QTHP 319
             +P
Sbjct: 299 NAYP 302


>gi|296284090|ref|ZP_06862088.1| phage integrase [Citromicrobium bathyomarinum JL354]
          Length = 299

 Score =  209 bits (532), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 113/301 (37%), Positives = 171/301 (56%), Gaps = 18/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI--QTIRQLSYTEIRAFISKR 78
           W  +L  ER LS  T+++Y     + L       EE      Q + +L    +RA +++R
Sbjct: 5   WESHLATERRLSPHTVRAYIRAAERLL-------EETPATDWQGVARLGAPALRAQLARR 57

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R   + +RS  R LS +++FL + +      ++    +R  +   +LPR +   +AL L 
Sbjct: 58  RADGLSNRSAARELSALRAFLAFARAEAGFDDAQAPRLRGPRIKRTLPRPVTPDEALHLA 117

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           + +        +W   R+ A+L LLYG G+R+ EALSLT ++    + T+R+ GKG K R
Sbjct: 118 ERIG--EERREEWTGLRDRAVLLLLYGAGMRLGEALSLTGEHAQIGE-TIRVTGKGGKTR 174

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           + P+LP++R AI  Y   CP DL  +   PLFRG RG PL+PG+ Q+ + Q+R  +GLP 
Sbjct: 175 VAPILPAIRSAIAAYVAACPHDLAPDK--PLFRGQRGGPLSPGLVQKAMAQVRGEIGLPA 232

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + T H LRHSFATHLL  G DLRS+Q +LGH  L +TQIYT V++ +    +++ Y   H
Sbjct: 233 NATPHALRHSFATHLLGAGADLRSLQELLGHASLGSTQIYTEVDAAS----LLDTYRNAH 288

Query: 319 P 319
           P
Sbjct: 289 P 289


>gi|15604648|ref|NP_221166.1| site-specific tyrosine recombinase XerC [Rickettsia prowazekii str.
           Madrid E]
 gi|34223090|sp|Q9ZCE0|XERC_RICPR RecName: Full=Tyrosine recombinase xerC
 gi|3861343|emb|CAA15242.1| PROBABLE INTEGRASE/RECOMBINASE RIPX (xerC) [Rickettsia prowazekii]
 gi|292572467|gb|ADE30382.1| Tyrosine recombinase XerC [Rickettsia prowazekii Rp22]
          Length = 305

 Score =  208 bits (530), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 119/312 (38%), Positives = 186/312 (59%), Gaps = 22/312 (7%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL+K+   W + L +++  S  T+ +Y  D + FL F+ +Y  E +T+  I+      IR
Sbjct: 8   ELIKQ---WQKYLILQKNYSNNTVIAYNNDLKHFLEFMNYYNSELVTLNHIKTADIRLIR 64

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           ++++KR+ +     S+ R LS +K+F K+L+K  +     I ++++ KK+  LP+ L+  
Sbjct: 65  SWLAKRKCENFTASSIARGLSTVKNFYKFLEKTLLLNNHIIFSIKSPKKAKLLPKGLS-- 122

Query: 133 QALTLVDNVLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
                VD+VL+   H       KW++ RN A++ L+Y  GLRISEALS+T  + + +   
Sbjct: 123 -----VDDVLISLEHIEEYGNVKWVELRNKALIVLIYAAGLRISEALSITKLH-LQNLEF 176

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           ++I GKG K RI+P LP  +  I +Y ++ P+ L+ N   P+FRG +GK L P VF R +
Sbjct: 177 IKIIGKGSKERIIPWLPLTKNLITKYLEILPYKLDEN--EPIFRGRQGKKLQPSVFNREL 234

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +L+R  GLP   TAH+ RHSFA+HLL  G DLRSIQ +LGH  LSTTQ YT  + K+  
Sbjct: 235 IKLKRIYGLPEYLTAHSFRHSFASHLLEYGADLRSIQELLGHKSLSTTQKYTQTSIKH-- 292

Query: 308 DWMMEIYDQTHP 319
             +  +Y+  +P
Sbjct: 293 --LEAVYNTAYP 302


>gi|295691144|ref|YP_003594837.1| integrase family protein [Caulobacter segnis ATCC 21756]
 gi|295433047|gb|ADG12219.1| integrase family protein [Caulobacter segnis ATCC 21756]
          Length = 309

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 119/301 (39%), Positives = 175/301 (58%), Gaps = 10/301 (3%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL +L +ER  S  T+++Y  +   +L FL  +  E +++  + ++S  ++R +++ RR 
Sbjct: 15  WLDHLTLERRASPRTVRAYGDNVLAYLNFLENHRGEALSVAALGEISAADLRGYLAFRRQ 74

Query: 81  QK--IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            +  +  RS+ ++LS I++F +Y+ +R     + I  +R  +    LPR ++E QA  L+
Sbjct: 75  GENALAPRSISQALSSIRAFHRYVDQRHGVANAAIGLVRGPRLKIGLPRPVSEDQARDLI 134

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                 T  E  W  AR+ A+L LL+GCGLRISEALSLT  ++    + LRI GKG K R
Sbjct: 135 FEASGDTERE-PWETARDEAVLTLLWGCGLRISEALSLTWSDV-PLGAALRITGKGGKTR 192

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           I P+L +VR+A+  Y D  PF L  +   PLFR  RG PL+P   Q  ++ LR  LGL  
Sbjct: 193 IAPVLDAVREAVAVYADELPFVLGPD--EPLFRAKRGGPLSPRHVQALVQTLRGRLGLSD 250

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             T H  RH+FATHLL  G DLR+IQ +LGH  LSTTQ YT V++      ++  Y   H
Sbjct: 251 RVTPHAFRHAFATHLLGAGADLRTIQELLGHASLSTTQRYTQVDAAG----LLAAYQAAH 306

Query: 319 P 319
           P
Sbjct: 307 P 307


>gi|312112853|ref|YP_004010449.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311217982|gb|ADP69350.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 344

 Score =  207 bits (528), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 123/304 (40%), Positives = 172/304 (56%), Gaps = 12/304 (3%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            WL  L      +  TL++YE D+RQFL  LA      +T+  +  L+  + R+F++ RR
Sbjct: 47  GWLAYLRDAHRYADNTLEAYERDSRQFLAHLAGKDARPVTLARLNALTPHDFRSFLADRR 106

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                 RSL R+LS ++S  + L++       +IL +   K    LP+ + E +A  +VD
Sbjct: 107 DDGAQSRSLSRTLSALRSLFRTLERTGALQNRSILAVALPKLPPRLPKPVTEAKAKEVVD 166

Query: 140 NVLLH---TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGD 195
              L    ++H   W  ARN A+L LLYG GLRISEAL L  ++  +  +  LRI+GKG 
Sbjct: 167 EAALDGELSAH--PWTGARNQAVLLLLYGSGLRISEALGLNRKDAPLGPRDVLRIRGKGG 224

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           + R+ P+LP  + AI +Y + CP    L  Q PLF G++G  LNP + Q  + +LR  L 
Sbjct: 225 RERLAPVLPVAQTAIADYIEQCPH--KLEPQGPLFVGVKGGRLNPRIVQLLLARLRTNLA 282

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           LP + T H LRHSFATHLLS G DLR IQ +LGH  LSTTQ YT V+     D + + Y 
Sbjct: 283 LPATATPHALRHSFATHLLSRGADLRVIQELLGHASLSTTQGYTAVDR----DRLFQAYS 338

Query: 316 QTHP 319
           + HP
Sbjct: 339 KAHP 342


>gi|157826278|ref|YP_001493998.1| site-specific tyrosine recombinase XerC [Rickettsia akari str.
           Hartford]
 gi|166918897|sp|A8GQ15|XERC_RICAH RecName: Full=Tyrosine recombinase xerC
 gi|157800236|gb|ABV75490.1| site-specific tyrosine recombinase XerC [Rickettsia akari str.
           Hartford]
          Length = 305

 Score =  207 bits (528), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 118/304 (38%), Positives = 176/304 (57%), Gaps = 19/304 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W + L ++R  S  T+ SY  D + FL F+ +Y  E +TI  I+      IR++++KR  
Sbjct: 13  WQKYLVLQRNYSNYTVISYNNDLKNFLEFMNYYNSELVTINHIKNADIRLIRSWLAKRNY 72

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                 S+ R LS +K+F ++L+K        I ++++ KK+  LP+AL+E       D+
Sbjct: 73  DNFTTSSIARGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSE-------DD 125

Query: 141 VLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           V++   H       KW++ RN ++L L+Y  GLRISEALS+T  + + +   +RI GKG 
Sbjct: 126 VVVSLEHIEEYGNVKWVELRNKSLLVLIYASGLRISEALSITKLH-LQNLEFIRIIGKGS 184

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RI+P LP  +  I +Y ++ P+ L  N   P+FRG RGK L P VF R + +L+ + G
Sbjct: 185 KERIIPWLPIAKNLITQYLEILPYKLGDN--EPIFRGKRGKKLQPQVFNRELIKLKHFYG 242

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           LP   TAH+ RHSFA+HLL  G +LRSIQ +LGH  LSTTQ YT  + K     +  +Y 
Sbjct: 243 LPQHLTAHSFRHSFASHLLERGAELRSIQELLGHKSLSTTQNYTKTSIKR----LEAVYT 298

Query: 316 QTHP 319
             +P
Sbjct: 299 TAYP 302


>gi|302381671|ref|YP_003817494.1| integrase [Brevundimonas subvibrioides ATCC 15264]
 gi|302192299|gb|ADK99870.1| integrase family protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 314

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 126/301 (41%), Positives = 174/301 (57%), Gaps = 10/301 (3%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL++L  ER LS  TL++Y    RQ+L FL  +  E   +  +  ++  E+RA +++RR+
Sbjct: 20  WLEHLAHERRLSPRTLEAYGHIGRQYLAFLERHRGEAQRLPDLGTVTAAELRAHLAERRS 79

Query: 81  --QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +  RSL ++LS I++F  +L +R  T    +  +R  +   +LPR ++  QA  L+
Sbjct: 80  GDHPLNARSLSQTLSAIRTFHVFLDRRCDTPAPQLALVRGPRVKATLPRPVSADQARGLL 139

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
               L    E  W   R++A+L LLYGCGLRISEALSLT  +    + TLRI GKG K R
Sbjct: 140 AEPGLDPDVE-PWEALRDTAVLSLLYGCGLRISEALSLTRADAPLPE-TLRITGKGGKTR 197

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VP+LP VR A+       PF L+    L  FR  RG  L+    Q  +++LR  LGLP 
Sbjct: 198 LVPVLPVVRSAVDAALAAQPFPLSPPDAL--FRARRGGALSARHVQATVQRLRGRLGLPA 255

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           S T H LRHSFATHLL  G DLRSIQ +LGH  LSTTQ YT V++ +    ++  Y   H
Sbjct: 256 SATPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQKYTAVDAAH----LLGAYAAAH 311

Query: 319 P 319
           P
Sbjct: 312 P 312


>gi|298293261|ref|YP_003695200.1| integrase family protein [Starkeya novella DSM 506]
 gi|296929772|gb|ADH90581.1| integrase family protein [Starkeya novella DSM 506]
          Length = 328

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 115/289 (39%), Positives = 162/289 (56%), Gaps = 8/289 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + WL  L  ER LS  T ++Y  D   FL  LA     +  I  +  LS  E+RA I+ R
Sbjct: 29  KGWLARLGHERRLSPKTREAYARDMSIFLGLLARQIGRQPEIADLANLSPREVRAVIAAR 88

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R + I  R+  R L+  +SF +++++  +     +  +R  + + +LPR L+   A  + 
Sbjct: 89  RAEGIEARTQMRFLAAARSFGRHMEREGLGKVGALTAVRAPRIARTLPRPLSPADARAMA 148

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT----PQNIMDDQSTLRIQGKG 194
           D           W+  R++A++ LLYG GLRISEAL L     P+    DQ  + + GKG
Sbjct: 149 DPATRAGEEREPWVLMRDAAVIALLYGSGLRISEALGLMRRDMPEPGRGDQ--IVVHGKG 206

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K R+VP+L  V + +  Y   CP++L  +  L  FRG +G PL+P + Q  + ++R  L
Sbjct: 207 GKTRMVPVLRQVAEMVDAYVCACPYELEPSSSL--FRGAKGGPLSPRIVQLAVERMRGGL 264

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           GLP S T H LRHSFATHLL  GGDLRSIQ +LGH  LSTTQIY  V+S
Sbjct: 265 GLPDSATPHALRHSFATHLLGRGGDLRSIQELLGHASLSTTQIYAAVDS 313


>gi|103485754|ref|YP_615315.1| phage integrase [Sphingopyxis alaskensis RB2256]
 gi|98975831|gb|ABF51982.1| phage integrase [Sphingopyxis alaskensis RB2256]
          Length = 297

 Score =  206 bits (524), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 117/301 (38%), Positives = 181/301 (60%), Gaps = 13/301 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++W  +L  E+  S+ T ++Y     +F  FL+ +    +    +  L+  ++RA+++ R
Sbjct: 7   RDWDAHLAHEKRRSEHTRRAYIATAERFCAFLSLHRGGAVDAAMLTALTPNDLRAYLADR 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R + +G+ S  R LS +++FL+++      + +++  MR  +    LPR ++  +A+ L 
Sbjct: 67  RAEGLGNASAARELSALRAFLRFVGG----SNASVPQMRGPRVKKGLPRPVSPAEAMQLA 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            NV    +    W+ AR+ A+L LLYG GLRI EAL+LT    M    TLR+ GK +K R
Sbjct: 123 QNV--EDNAREGWVGARDFALLLLLYGAGLRIGEALALT-GAAMPLGDTLRVTGKRNKTR 179

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVP+LP+V KA+  Y   CP+ +    + PLF G+RG PL+PGV +  +R  RR LGL  
Sbjct: 180 IVPILPAVAKAVARYVAACPWPIAR--ETPLFLGVRGGPLHPGVVRVSVRSARRALGLSD 237

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
            TT H LRHSFATHLL+ G DLRS+Q +LGH  L++TQIYT V++ +    +++IY   H
Sbjct: 238 RTTPHALRHSFATHLLAGGADLRSLQELLGHASLASTQIYTAVDAAH----LLDIYRSAH 293

Query: 319 P 319
           P
Sbjct: 294 P 294


>gi|167644210|ref|YP_001681873.1| site-specific tyrosine recombinase XerC [Caulobacter sp. K31]
 gi|167346640|gb|ABZ69375.1| integrase family protein [Caulobacter sp. K31]
          Length = 306

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 126/301 (41%), Positives = 174/301 (57%), Gaps = 10/301 (3%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL++L  ER  S  T+++Y  +   +L FL  +  E  ++  +  ++  E+RA+++ RR 
Sbjct: 12  WLEHLTHERRASPRTVRAYGDNVLAYLNFLERHRGEPQSVSDLGGITAAELRAYLAFRRE 71

Query: 81  QKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            + G   RSL +SLS I++F +YL  R  T  + I  +R  +     PR ++E QA  L+
Sbjct: 72  GENGLSPRSLSQSLSSIRAFHRYLDHRLDTPNAAIGLVRGPRIKVGAPRPVSEDQAHGLI 131

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             + L +  E  W  AR+ A+L LL+GCGLRISE LSL  ++    +S LRI GKG K R
Sbjct: 132 AEISLDSDRE-DWEVARDEAVLTLLWGCGLRISEGLSLLRRDAPLAES-LRITGKGGKTR 189

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVP+L  VR+ I  Y    PF L  +   PLFR  RG PL+P   Q  ++ LR  LGL  
Sbjct: 190 IVPVLDIVRERIDAYLAALPFALEPDD--PLFRAKRGGPLSPRHVQATMQHLRSRLGLSD 247

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             T H LRHSFATHLL  G DLRSIQ +LGH  LSTTQ YT V++      ++  Y + H
Sbjct: 248 RATPHALRHSFATHLLGAGADLRSIQDLLGHASLSTTQRYTQVDAAG----LLAAYGKAH 303

Query: 319 P 319
           P
Sbjct: 304 P 304


>gi|87200080|ref|YP_497337.1| phage integrase [Novosphingobium aromaticivorans DSM 12444]
 gi|87135761|gb|ABD26503.1| phage integrase [Novosphingobium aromaticivorans DSM 12444]
          Length = 297

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 171/301 (56%), Gaps = 13/301 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + W  +L + R  S  T+++Y     +FL  L    +      ++ ++    +RA ++ R
Sbjct: 8   EAWNAHLALGRRRSPHTVRAYAATAARFLRGLPGEQD----WSSLARIDAATLRAHLADR 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R   +G+ S  R LS +K+F+ + +++    +++   +R  +    LPR +   +A+ L 
Sbjct: 64  RADGLGNVSAARELSALKTFIAFAREQAGHEDASRPRLRGPRVKRGLPRPITPDEAVNLA 123

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           + V    +    WI AR+ A+L LLYG G+RI+EAL+L P + +     + I GKG + R
Sbjct: 124 ETVADDAA--VPWIAARDRAVLLLLYGAGMRIAEALAL-PASALPLGEAVTITGKGGRQR 180

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VPLLP VR  + +Y   CP+ L  +   PLFRG +G PL  G+ QR + + R  LGLP 
Sbjct: 181 VVPLLPIVRAGVDDYVRQCPWPLEKDK--PLFRGAKGGPLAQGMVQRAVARARIALGLPA 238

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + T H LRHSFATHLL  G DLRS+Q +LGH  LS+TQIYT V++      ++++Y   H
Sbjct: 239 TATPHALRHSFATHLLGAGADLRSLQELLGHASLSSTQIYTRVDAAT----LLDVYRNAH 294

Query: 319 P 319
           P
Sbjct: 295 P 295


>gi|83313349|ref|YP_423613.1| site-specific tyrosine recombinase XerC [Magnetospirillum
           magneticum AMB-1]
 gi|82948190|dbj|BAE53054.1| Integrase [Magnetospirillum magneticum AMB-1]
          Length = 314

 Score =  203 bits (516), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 120/307 (39%), Positives = 176/307 (57%), Gaps = 9/307 (2%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L +  ++W Q L  ER  S  TL  Y  D   FL FL  +   +  +  +  L   + R
Sbjct: 13  DLARAVESWWQWLGSERRASSHTLDGYGRDLAAFLTFLTEHLAAEPDLAALASLGAGDFR 72

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           AF+++R    +G  SL R +S ++ F K+L +  +     +  +++ +   S+P+ L   
Sbjct: 73  AFLARRTQDGLGRSSLARLMSTLRGFFKFLDRHDLVHNPALKAVKSPRPPKSVPKPLAPD 132

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +AL  + +      H+  W+ AR+ A+  LLYG GLR+ EALSLT +++     T+ I G
Sbjct: 133 EALEALSSA--GELHDEPWLAARDVALFTLLYGAGLRLGEALSLTRRDL-PKGDTMVITG 189

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG+K R+VP+LP VR AI +Y    P+        P+F G RG PLNPGV QR +R+LR+
Sbjct: 190 KGNKQRVVPVLPVVRDAIADYLKRLPYPAEPTD--PIFLGARGGPLNPGVVQRQMRRLRQ 247

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            +GLP + T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ YT V++      +  
Sbjct: 248 MMGLPETATPHALRHSFATHLLAGGGDLRTIQELLGHSSLSTTQRYTEVDAAR----LTR 303

Query: 313 IYDQTHP 319
           +Y   HP
Sbjct: 304 VYRDAHP 310


>gi|209965542|ref|YP_002298457.1| tyrosine recombinase XerC, putative [Rhodospirillum centenum SW]
 gi|259710436|sp|B6IPE2|XERC_RHOCS RecName: Full=Tyrosine recombinase xerC
 gi|209959008|gb|ACI99644.1| tyrosine recombinase XerC, putative [Rhodospirillum centenum SW]
          Length = 341

 Score =  202 bits (515), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 117/301 (38%), Positives = 167/301 (55%), Gaps = 8/301 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + W + LE ERG S  TL+SY  D   FL F+A +      +  +  L     RA+++ R
Sbjct: 21  ERWGRWLEHERGASTHTLRSYRADLAGFLAFVAEHRGRPPGLNDLGALDLGAFRAWLAAR 80

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                G  +  R +SG++SF ++  +  +     I  +   K    LPR L    A  L+
Sbjct: 81  AADGAGAATRSRGVSGVRSFFRWADRSGLLHNPAIALLTAPKAQRPLPRPLAADDAALLL 140

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +        E  WI  R+ A+  LLYGCGLRISEA+ L   ++    +++R+ GKG K R
Sbjct: 141 EEAA--AVPEAPWIGLRDRALFTLLYGCGLRISEAIGLNRSDLPAGAASVRVLGKGGKQR 198

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            VP+LP+VR+A+  Y    P+        PLF G +G  L+P V +R +R LR  LGLP 
Sbjct: 199 DVPVLPAVREAVAAYLAAVPW--GGGRAAPLFVGAKGDRLSPDVARRQMRHLRALLGLPD 256

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           STT H LRHSFATHLL  G DLR+IQ +LGH  LSTTQ YT+V++++    ++ +Y+  H
Sbjct: 257 STTPHALRHSFATHLLGGGADLRAIQDLLGHASLSTTQRYTDVDAEH----LLSVYETAH 312

Query: 319 P 319
           P
Sbjct: 313 P 313


>gi|148285154|ref|YP_001249244.1| site-specific tyrosine recombinase XerC [Orientia tsutsugamushi
           str. Boryong]
 gi|146740593|emb|CAM81243.1| tyrosine recombinase XerC [Orientia tsutsugamushi str. Boryong]
          Length = 312

 Score =  202 bits (514), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 122/308 (39%), Positives = 187/308 (60%), Gaps = 11/308 (3%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQTIRQLSYTEIRAFISKRR 79
           WL +L+  +  S  T  SY  D +QFL F+  Y    ++    +  +    +R+++S+R 
Sbjct: 14  WLNHLKNYKNYSINTCNSYNNDLQQFLNFIVDYCNLSELKTSHLCSVDIRLMRSWLSQRY 73

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
             +    S  R+LS +++F KYL K+       I  +R+ K +  LP+AL+ +  +    
Sbjct: 74  NLQYNSSSNSRALSSVRNFYKYLFKQHNLVNKIISAVRSPKLAKRLPKALDIEDTVACTT 133

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            +  +     KWI AR+ A+L+LLYG GLRISEALS+T  ++  +  +L I+GKG+KIR+
Sbjct: 134 EI--NNIANDKWIGARDKALLFLLYGQGLRISEALSVTKVSLKSE--SLIIKGKGNKIRL 189

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +P L   ++ + +Y +L P+ L  N   PLF G RGK L P VF R++ +LRR L LP S
Sbjct: 190 IPWLDITKQLVSDYVNLVPYSLTENS--PLFVGKRGKKLQPAVFGRHLIKLRRQLNLPES 247

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T HT RH FA+HLL+NG DLRSIQ +LGH  LS+TQIYT +NS    D++  +Y+++HP
Sbjct: 248 LTPHTFRHCFASHLLNNGADLRSIQELLGHQSLSSTQIYTKINS----DFLTSVYNKSHP 303

Query: 320 SITQKDKK 327
            + +++ K
Sbjct: 304 LVREQNNK 311


>gi|315497300|ref|YP_004086104.1| integrase family protein [Asticcacaulis excentricus CB 48]
 gi|315415312|gb|ADU11953.1| integrase family protein [Asticcacaulis excentricus CB 48]
          Length = 304

 Score =  202 bits (514), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 124/304 (40%), Positives = 176/304 (57%), Gaps = 10/304 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS- 76
           R  WLQ L+ ++ +S  TL++Y      ++  L       I +  +  L+  +IR +++ 
Sbjct: 7   RLQWLQYLKAQKRVSPRTLEAYGHAFSLYIGHLRKALGADIDLNDLSHLTSADIRGWMAY 66

Query: 77  -KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            + + + +  RSL + LS IKSF  YL        + ++  +  +   SLPR LNE QA 
Sbjct: 67  LRGKDEPLSARSLAQHLSAIKSFHSYLDLHMGYANAQVVLTQGPRLKTSLPRPLNEDQAQ 126

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+  + L    +++W  AR+ A+L LLYGCGLRISEALSLT ++    + TLRI GKG+
Sbjct: 127 GLLTEIEL-DGDKSEWEAARDRAVLLLLYGCGLRISEALSLTAKDTPLAE-TLRIVGKGN 184

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R+VP+L +VR+A+  Y  L PF   L  +  LFR  RG PL+P   Q  ++ LR  LG
Sbjct: 185 KTRLVPVLEAVREAVDTYRRLQPF--TLTEEDALFRAPRGGPLSPRHVQLSVQHLRSRLG 242

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L    T H LRHSFATHLL +G DLRSIQ +LGH  LSTTQ YT V+++     ++  Y 
Sbjct: 243 LSDRATPHALRHSFATHLLGSGADLRSIQELLGHASLSTTQKYTQVDAER----LLSAYA 298

Query: 316 QTHP 319
             HP
Sbjct: 299 AAHP 302


>gi|85708628|ref|ZP_01039694.1| tyrosine recombinase [Erythrobacter sp. NAP1]
 gi|85690162|gb|EAQ30165.1| tyrosine recombinase [Erythrobacter sp. NAP1]
          Length = 265

 Score =  199 bits (507), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 101/261 (38%), Positives = 155/261 (59%), Gaps = 9/261 (3%)

Query: 59  TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
           T   +  +   ++R+ ++ RR Q + + S  R LS +K+ + Y +      + +   +  
Sbjct: 9   TWHDVAAVEAHDLRSHLASRRAQGLSNSSAARELSALKALIAYARSEAGDPDPSAPRLCG 68

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            +    LPR +   +A+ + D  L+  +    WI AR+ A+L L+YG GLRI+EALSL  
Sbjct: 69  PRLKKGLPRPVTPDEAVNIAD--LIDGTASEDWIGARDRAVLLLMYGSGLRIAEALSLEG 126

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           ++ +  + TL++ GKG K R+VP+LP  R+A+ EY + CP+   L    PLFRG +G PL
Sbjct: 127 RDAVLGE-TLQVTGKGGKQRLVPILPITREAVAEYANACPW--PLPTHEPLFRGAKGGPL 183

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           + G+ Q+ + + RR LGLP + T H LRHSFATHLL  G DLRS+Q +LGH  L +TQIY
Sbjct: 184 SAGMVQKAMARARRALGLPDTATPHALRHSFATHLLGAGADLRSLQELLGHASLGSTQIY 243

Query: 299 TNVNSKNGGDWMMEIYDQTHP 319
           T V++ +    ++E Y   HP
Sbjct: 244 TKVDAAS----LLETYRGAHP 260


>gi|332187766|ref|ZP_08389500.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas
           sp. S17]
 gi|332012116|gb|EGI54187.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas
           sp. S17]
          Length = 292

 Score =  199 bits (507), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 111/300 (37%), Positives = 170/300 (56%), Gaps = 16/300 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++ ++L ++   S  T+++Y     +   FL  +   ++    + +++ T++RA+++ RR
Sbjct: 7   DYYRHLTVDLRRSDHTVRAYVATAERLTGFLTRHWGSEVDAGALSRITATDLRAYLAFRR 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +   S  R LS +++FL++              ++  ++  S+PR       + L +
Sbjct: 67  GEGLTAASTARELSAVRTFLQFAGIEPPA-------LKGPRRKRSMPRPQAPADIIALAE 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           +V    +    WI AR+ A+L LLYG GLRI EAL+L P  I+    TLR+ GK DK RI
Sbjct: 120 DVAEDAAE--PWIAARDWAVLLLLYGAGLRIGEALAL-PAAILPLGETLRVLGKRDKTRI 176

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPLLP VR+AI  Y    PF   +  + PLFRG +G PL+P + +R +R  R  LGL   
Sbjct: 177 VPLLPQVREAIERYAAQMPF--AVEGREPLFRGAKGGPLSPAIIRRSVRGARERLGLGAR 234

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           TT H LRHSFATHLL  G DLR +Q +LGH  LS+TQIYT V++      +++IY   HP
Sbjct: 235 TTPHALRHSFATHLLGRGADLRQLQELLGHASLSSTQIYTAVDAAR----LLDIYRTAHP 290


>gi|85374026|ref|YP_458088.1| tyrosine recombinase XerC [Erythrobacter litoralis HTCC2594]
 gi|84787109|gb|ABC63291.1| tyrosine recombinase XerC [Erythrobacter litoralis HTCC2594]
          Length = 264

 Score =  199 bits (507), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 101/249 (40%), Positives = 148/249 (59%), Gaps = 9/249 (3%)

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +R  ++ RR + + + S  R LS +K+F+ Y +      E+    +R  +    LPR + 
Sbjct: 21  LRRHLAARRAEGLANTSAARELSALKAFIAYARSETGDAEATAPRLRGPRIKKGLPRPVT 80

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             +A+ L D V    S    WI  R+ A+L LLYG GLRI+EALSLT + +   +S L++
Sbjct: 81  PDEAINLADTV--DASAADDWIGKRDRAVLLLLYGAGLRIAEALSLTGKAVPLGES-LQV 137

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG K R+VP+LP +  A+ +Y   CP+   +  + PLFRG +G PL+ G+ Q+   + 
Sbjct: 138 TGKGGKQRVVPILPLIGDAVADYAKTCPW--PIEPKGPLFRGAKGGPLSQGMIQKTTARA 195

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           RR LGLP + T H LRHSFATHLL  G DLRS+Q +LGH  L +TQIYT V++      +
Sbjct: 196 RRALGLPDTATPHALRHSFATHLLGAGADLRSLQELLGHASLGSTQIYTKVDAAT----L 251

Query: 311 MEIYDQTHP 319
           ++ Y + HP
Sbjct: 252 LDTYRKAHP 260


>gi|23014819|ref|ZP_00054617.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1]
          Length = 314

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 120/307 (39%), Positives = 175/307 (57%), Gaps = 9/307 (2%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L +  ++W Q L  E+  S  TL  Y  D   FL FL  +   +  +  +  L   + R
Sbjct: 13  DLARAVESWRQWLGSEKRASAHTLDGYGRDLAAFLTFLTEHLAAEPDLAALAALGPGDFR 72

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           AF+++R    +G  SL R +S ++ F K+L +  +     I  +++ +   S+P+ L   
Sbjct: 73  AFLARRTQDGLGRSSLARLMSTLRGFFKFLDRHGLVHNPAIKAVKSPRPPKSIPKPLAPD 132

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +AL  + +      H+  W+ AR+ A+  LLYG GLR+ EALSL  ++ +    T+ I G
Sbjct: 133 EALEALSSA--GELHDEPWLAARDVALFSLLYGAGLRLGEALSLLRRD-LPKGDTMVITG 189

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG+K R+VP+LP VR AI +Y    PF        P+F G RG PLNPGV QR +R+LR+
Sbjct: 190 KGNKQRVVPVLPVVRDAIADYLKRLPFPSESTD--PVFLGARGGPLNPGVVQRQMRRLRQ 247

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            +GLP + T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ YT V++      +  
Sbjct: 248 VMGLPDTATPHALRHSFATHLLAGGGDLRTIQELLGHSSLSTTQRYTEVDAAR----LTR 303

Query: 313 IYDQTHP 319
           +Y   HP
Sbjct: 304 VYRDAHP 310


>gi|56552810|ref|YP_163649.1| site-specific tyrosine recombinase XerC [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56544384|gb|AAV90538.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 307

 Score =  199 bits (506), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 116/300 (38%), Positives = 177/300 (59%), Gaps = 15/300 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            W Q L+     S  ++++Y     +F+ FL  +  + I   T+++    EIRAF++ RR
Sbjct: 19  QWEQYLQFSLRRSPHSIRAYMATVHRFISFLGNHRGDLIDKNTLQKTDIAEIRAFLAYRR 78

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              + + S+ R +SGI++FL+++    I        ++  +    +PR L+ + A+ L  
Sbjct: 79  QSGLANSSVAREISGIRAFLRFIGLDPIPA------IKGARVKKGIPRPLSPEDAVALAK 132

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                 S +  WI+AR+ A+L LLYG GLRISEAL+LT + I+  Q+TLR+ GK  KIRI
Sbjct: 133 EASEEASEQ--WIEARDLALLLLLYGSGLRISEALNLTCE-ILPLQTTLRVVGKRSKIRI 189

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPLL  V++A+  Y  LCP+  + +   P FRG +G  L+  V +R +R+ R +LGL   
Sbjct: 190 VPLLEKVKRAMETYVRLCPYAFSGS--QPFFRGAKGGVLSADVLRRTVRKARYHLGLDNK 247

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T H LRHSFA+HLL  G DLRS+Q +LGH  LS+TQIYT V++      ++++Y   HP
Sbjct: 248 ATPHALRHSFASHLLGRGADLRSLQELLGHASLSSTQIYTAVDAAR----LLDVYRAAHP 303


>gi|241762668|ref|ZP_04760738.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241372739|gb|EER62461.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 307

 Score =  198 bits (504), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 116/300 (38%), Positives = 176/300 (58%), Gaps = 15/300 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            W Q L+     S   +++Y     +F+ FL  +  + I   T+++    EIRAF++ RR
Sbjct: 19  QWEQYLQFSLRRSPHGIRAYMATVHRFISFLGNHRGDLIDKNTLQKTDIAEIRAFLAYRR 78

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              + + S+ R +SGI++FL+++    I        ++  +    +PR L+ + A+ L  
Sbjct: 79  QSGLANSSVAREISGIRAFLRFIGLDPIPA------IKGARVKKGIPRPLSPEDAVALAK 132

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                 S +  WI+AR+ A+L LLYG GLRISEAL+LT + I+  Q+TLR+ GK  KIRI
Sbjct: 133 EASEEASEQ--WIEARDLALLLLLYGSGLRISEALNLTCE-ILPLQTTLRVVGKRSKIRI 189

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPLL  V++A+  Y  LCP+  + +   P FRG +G  L+  V +R +R+ R +LGL   
Sbjct: 190 VPLLEKVKRAMETYVRLCPYAFSGS--QPFFRGAKGGVLSADVLRRTVRKARYHLGLDNK 247

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T H LRHSFA+HLL  G DLRS+Q +LGH  LS+TQIYT V++      ++++Y   HP
Sbjct: 248 ATPHALRHSFASHLLGRGADLRSLQELLGHASLSSTQIYTAVDAAR----LLDVYRAAHP 303


>gi|260753463|ref|YP_003226356.1| site-specific tyrosine recombinase XerC [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552826|gb|ACV75772.1| integrase family protein [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 307

 Score =  198 bits (504), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 115/300 (38%), Positives = 177/300 (59%), Gaps = 15/300 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            W Q L+     S  ++++Y     +F+ FL  +  + I   T+++    EIRAF++ RR
Sbjct: 19  QWEQYLQFSLRRSPHSIRAYMATVHRFISFLGNHRGDLIDKNTLQKTDIAEIRAFLAYRR 78

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              + + S+ R +SGI++FL+++    I        ++  +    +PR L+ + A+ L  
Sbjct: 79  QSGLANSSVAREISGIRAFLRFIGLDPIPA------IKGARVKKGIPRPLSPEDAVALAK 132

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                 S +  WI+AR+ A+L LLYG GLRISEAL+LT + I+  Q+TLR+ GK  KIRI
Sbjct: 133 EASEEASEQ--WIEARDLALLLLLYGSGLRISEALNLTCE-ILPLQTTLRVVGKRSKIRI 189

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPLL  V++A+  Y  LCP+  + +   P FRG +G  L+  V +R +R+ R +LG+   
Sbjct: 190 VPLLEKVKRAMETYVRLCPYAFSGS--QPFFRGAKGGVLSADVLRRTVRKARYHLGVDNK 247

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T H LRHSFA+HLL  G DLRS+Q +LGH  LS+TQIYT V++      ++++Y   HP
Sbjct: 248 ATPHALRHSFASHLLGRGADLRSLQELLGHASLSSTQIYTAVDAAR----LLDVYRAAHP 303


>gi|288959341|ref|YP_003449682.1| integrase/recombinase [Azospirillum sp. B510]
 gi|288911649|dbj|BAI73138.1| integrase/recombinase [Azospirillum sp. B510]
          Length = 321

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 114/302 (37%), Positives = 169/302 (55%), Gaps = 12/302 (3%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKR 78
           +W + LE E+ +S+ TL +Y  D  +FL FL  F+     ++  +  L   + RA++S+ 
Sbjct: 25  HWRRWLESEKVVSRHTLSAYTADVAEFLRFLTEFHGGSPPSLNDLGDLKAADFRAWMSRL 84

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +   S  R L+ +++  +++ +        +  +   K     PR L E  A  L+
Sbjct: 85  AMDGLVGASRARKLAAVRNLFRWMDRGGRLHNPAVATLATPKVKRPAPRPLTEIDADRLL 144

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKI 197
                    E  WI  R+ A+  LLYGCGLRISEAL L  ++  + D  TLR+ GKG K 
Sbjct: 145 --EEAEREREEPWIGKRDRALFTLLYGCGLRISEALGLAARDAPLGD--TLRVTGKGRKD 200

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R++P+LP+V +A+  Y D CPF   L    PLF G RG  LN  + Q  +++LR  +G+P
Sbjct: 201 RMIPILPAVTEAVRAYLDSCPF--TLAPDGPLFVGTRGGRLNASIAQHQMQKLRALMGMP 258

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + T H LRHSFATHLL++GGDLR+IQ +LGH  LSTTQ YT+V ++     +M +Y   
Sbjct: 259 DNATPHALRHSFATHLLADGGDLRAIQDLLGHASLSTTQRYTDVENEQ----LMNVYRNA 314

Query: 318 HP 319
           HP
Sbjct: 315 HP 316


>gi|189184773|ref|YP_001938558.1| site-specific tyrosine recombinase XerC [Orientia tsutsugamushi
           str. Ikeda]
 gi|189181544|dbj|BAG41324.1| integrase/recombinase XerC [Orientia tsutsugamushi str. Ikeda]
          Length = 312

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 124/308 (40%), Positives = 186/308 (60%), Gaps = 11/308 (3%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQTIRQLSYTEIRAFISKRR 79
           WL  L+  +  S  T  SY  D +QFL F+  Y    ++ I  +  +    +R+++S+R 
Sbjct: 14  WLNYLKNYKNYSINTCSSYNNDLQQFLNFIVDYCNLSELKISHLCSVDIRLMRSWLSQRY 73

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
             +    S  R+LS +++F KYL K        I  +R+ K +  LP+AL+ +  +    
Sbjct: 74  NLQYNSSSNSRALSSVRNFYKYLFKHHNLVNKIICAVRSPKLAKRLPKALDIQDTVACTT 133

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            +  +     KWI AR+ A+L LLYG GLRISEALS+T  ++  +  +L I+GKG+KIR+
Sbjct: 134 EI--NNIANDKWIGARDKALLLLLYGQGLRISEALSVTKASLKSE--SLIIKGKGNKIRL 189

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +P L   ++ + +Y +L P+ L  N   PLF G RGK L P VF R++ +LRR L LP S
Sbjct: 190 IPWLDITKQLLSDYVNLVPYSLTDNS--PLFVGKRGKKLQPAVFGRHLIKLRRQLNLPES 247

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            TAHT RH FA+HLL+NG DLRSIQ +LGH  LS+TQIYT +NS    D++  +Y+++HP
Sbjct: 248 LTAHTFRHCFASHLLNNGADLRSIQELLGHQSLSSTQIYTKINS----DFLTSVYNKSHP 303

Query: 320 SITQKDKK 327
            + +++ K
Sbjct: 304 LVREQNNK 311


>gi|73667280|ref|YP_303296.1| Phage integrase, N-terminal SAM- like [Ehrlichia canis str. Jake]
 gi|72394421|gb|AAZ68698.1| Phage integrase, N-terminal SAM- like protein [Ehrlichia canis str.
           Jake]
          Length = 310

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 112/306 (36%), Positives = 175/306 (57%), Gaps = 12/306 (3%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W+  LE ER  S  T+ +Y  D  +FL FL  Y    +T++ +  +   ++R + + R  
Sbjct: 13  WVSWLEKERRYSVNTVDAYVRDVNKFLGFLYTYVLRPVTLEDVVNIKVADLRKWFTFRYQ 72

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +   +  RSLS +K+F +YL +       +I  +   K  ++LP+ L +      ++N
Sbjct: 73  ANVEAITNARSLSALKNFFRYLSRTYDVDNQSIFCLSRPKLKSALPKTLGQFH----IEN 128

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           ++ + S    W+  R+ AI+ LLYGCGLRISEA+ L  Q++   +  + I GKG+K RI+
Sbjct: 129 IVNYYSLHDNWVFKRDFAIIMLLYGCGLRISEAVGLKFQDVRTGE--ILITGKGNKERIL 186

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           P+LP VR ++ EY   CP+   LN      +F G+ GK L    F   I+++   +GLP 
Sbjct: 187 PILPVVRNSLDEYIKFCPYHTKLNSVGNEYIFVGVNGKKLGRTYFANRIQKICEKIGLPD 246

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           +TT H  RHSFATHLL +G D+RSIQ +LGH  LSTTQIYT+++ K+    +++ Y   H
Sbjct: 247 TTTPHVFRHSFATHLLLSGADIRSIQELLGHANLSTTQIYTHLDHKS----IIDHYKNFH 302

Query: 319 PSITQK 324
           P + +K
Sbjct: 303 PQVIKK 308


>gi|149184521|ref|ZP_01862839.1| phage integrase [Erythrobacter sp. SD-21]
 gi|148831841|gb|EDL50274.1| phage integrase [Erythrobacter sp. SD-21]
          Length = 299

 Score =  195 bits (496), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 108/288 (37%), Positives = 165/288 (57%), Gaps = 14/288 (4%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  T+++Y     + L  L  +  ++I      +LS  ++R  ++ RR+  + + S  R 
Sbjct: 21  SPHTVRAYHKAAERLLSRLHLHEFDQIA-----ELSAGKLRTHLASRRSDGLSNASAARE 75

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           LS +KSF+ + + +    +++   MR  +    LPR +    A+ L + +         W
Sbjct: 76  LSALKSFIGFARAQAGHEQTDAPRMRGPRLKKGLPRPVTPDDAIGLAETI--EELAVDGW 133

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           + AR+ A+L LLYG G+RISEALSL   ++   + TL + GKG+K R+VPLLP VR ++ 
Sbjct: 134 VGARDRAVLLLLYGAGMRISEALSLKGGDLPLGE-TLTVTGKGNKQRVVPLLPLVRDSVA 192

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
            Y   CP+   L  + PLFRG++G  L+ GV Q+   + RR LGLP + T H LRHSFAT
Sbjct: 193 TYVKQCPW--PLGPKDPLFRGVKGGVLSQGVVQKATARARRALGLPDTATPHALRHSFAT 250

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HLL  G DLRS+Q +LGH  L +TQIYT V++ +    +++ Y   HP
Sbjct: 251 HLLGAGADLRSLQELLGHASLGSTQIYTKVDAAS----LLDTYRNAHP 294


>gi|326387918|ref|ZP_08209524.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207964|gb|EGD58775.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 298

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 119/317 (37%), Positives = 172/317 (54%), Gaps = 24/317 (7%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
            LPEI+S         W  +L   R  S  T+++Y    R+ +  L    E+   +   R
Sbjct: 2   TLPEILS--------AWHDHLAHGRRRSPHTVRAYVATARRLITRL----EQDGALHWAR 49

Query: 65  --QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
              L  T +R +++ RR   IG+ S  R LS +K+F+ + +  +         +R  +  
Sbjct: 50  LGALDATALRHYLADRREHGIGNVSAARELSALKAFIAFART-QADMPPGAPRLRGPRVK 108

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             LPR +    A+ L + V    +    WI AR++A+L LLYG GLRI EAL+L P  I+
Sbjct: 109 KGLPRPITPDDAVNLAETVAEDATE--PWIAARDTAVLLLLYGSGLRIGEALAL-PAGIL 165

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
               ++ I GKG + R+V LLP VR A+  Y  L P+ L  +   PLFRG +G PL+ G+
Sbjct: 166 PAGESMVITGKGGRQRLVALLPVVRAALERYAALVPWPLGKDD--PLFRGAKGGPLSAGM 223

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +R + + R  LGLP S T H LRHSFATHLL  G DLRS+Q +LGH  LS+TQIYT V+
Sbjct: 224 IRRAMARARVALGLPPSATPHALRHSFATHLLGAGADLRSLQELLGHASLSSTQIYTKVD 283

Query: 303 SKNGGDWMMEIYDQTHP 319
           +      ++++Y   HP
Sbjct: 284 AAR----LLDVYRSAHP 296


>gi|294085404|ref|YP_003552164.1| phage integrase family protein [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664979|gb|ADE40080.1| phage integrase family protein [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 299

 Score =  192 bits (487), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 113/304 (37%), Positives = 173/304 (56%), Gaps = 16/304 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
            R  WL  L  E+   + T+ +YE D   +  +LA    +K+T    R    T  R +I+
Sbjct: 6   HRAAWLAWLAEEKRYGRNTIDAYETDLDDYTSYLA-TQPDKLTSSPNR----TVFRGWIA 60

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               + +   ++ R +S ++SFL++  ++ +    ++  +R  +   ++P++L+   A  
Sbjct: 61  SMSGRDLARTTIARRVSALRSFLRFASRQNLLDVPDLSWLRAPRPPRTVPKSLSVDDAQA 120

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGD 195
           L+  +      +  WI AR+ A+L LLYG GLRISEALSL  Q+  + D   L I GKG+
Sbjct: 121 LLAAIFARRGDD--WIKARDFAVLMLLYGAGLRISEALSLRRQDAPLGDW--LSIMGKGN 176

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K+R VP+L +  +A+ EY DLCP  L L+   PLF   RG  L     QR +  LR  L 
Sbjct: 177 KMRDVPVLRAAAQAVDEYIDLCP--LALDSDKPLFVSSRGGALGARAVQRLVESLRVELD 234

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           LP   T H LRH+FATHLL NGGDLR+IQ +LGH  L+TTQ+YT+V+  +    +++++ 
Sbjct: 235 LPAHVTPHALRHAFATHLLGNGGDLRAIQQLLGHVSLATTQLYTHVDEAH----LVKVHQ 290

Query: 316 QTHP 319
           +THP
Sbjct: 291 ETHP 294


>gi|269958529|ref|YP_003328316.1| site-specific tyrosine recombinase [Anaplasma centrale str. Israel]
 gi|269848358|gb|ACZ49002.1| site-specific tyrosine recombinase [Anaplasma centrale str. Israel]
          Length = 312

 Score =  192 bits (487), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 116/317 (36%), Positives = 178/317 (56%), Gaps = 20/317 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIR 72
           LL    +WL  L +ER  S  T+ +YE D   F  F+     E++  ++ I++L   E+R
Sbjct: 6   LLSAINDWLCWLRVERKCSPNTVAAYERDIMDFYKFICGEPCERVAGLKDIQELRSAELR 65

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           ++++ R  Q     S  R+++ ++SF +YL ++     S + N+       SLP+ L E 
Sbjct: 66  SWLADRFKQGKQSSSNARAVAVVRSFFRYLHRKCGMNGSVVSNISRPIVRKSLPKVLEES 125

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q   ++            W   R+ A+  LLYGCGLRISEA+++   ++   Q  LR+ G
Sbjct: 126 QIRKVMGE-----REAPHWTHTRDLAVSALLYGCGLRISEAVNVKFCDL--GQDGLRVLG 178

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYI 247
           KG K R++P+LP VR+AI EY   CP   +L +        +F G+RG  L+   F   +
Sbjct: 179 KGSKERVIPVLPWVRRAIDEYVANCP---HLRVHSASGTEYIFVGLRGGRLSRTYFAHRM 235

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           R+LRR +GLP +TT HTLRHSFATHL   G D+R +Q +LGH  L+TTQIYT+++  +  
Sbjct: 236 RKLRRRVGLPETTTPHTLRHSFATHLFLEGADIRVVQELLGHASLATTQIYTHLDYNS-- 293

Query: 308 DWMMEIYDQTHPSITQK 324
             ++E Y + HP  T+K
Sbjct: 294 --VIENYREFHPQTTKK 308


>gi|88607829|ref|YP_504822.1| tyrosine recombinase XerC [Anaplasma phagocytophilum HZ]
 gi|88598892|gb|ABD44362.1| tyrosine recombinase XerC [Anaplasma phagocytophilum HZ]
          Length = 319

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 118/309 (38%), Positives = 172/309 (55%), Gaps = 17/309 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK--ITIQTIRQLSYTEIRAFISKR 78
           W++ LE E+  SK T+ +Y  D R FL  +    +EK  + I  +  L  TE R +I+ R
Sbjct: 21  WVKCLEEEKRYSKHTVAAYLRDIRDFLQVVYGLRQEKSVVLITEMENLPMTEFRRWITIR 80

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R++S I++F +YL++        + ++ N      LP+ L +   L +V
Sbjct: 81  CNQGKQSVSNLRAISAIRNFFRYLQRNHGIKNDVVFHIVNPIVRKGLPKVLEKSHVLKMV 140

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                  S    W   R++AI+ LLYGCGLRISEA+ L   ++  D   +R+ GKG K R
Sbjct: 141 -------SENIHWTSRRDAAIVALLYGCGLRISEAVGLRFGDLEAD--AVRVLGKGKKER 191

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           I+P+LP V+K +  Y + CPF      N    +F G+RGK L+   F   ++ LRR +GL
Sbjct: 192 IIPILPWVQKLLDGYVESCPFHGTGCGNKASYVFLGVRGKVLDRTYFAHRMQALRRNMGL 251

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           P STT H LRHSFATHL   G D+R IQ +LGH  LSTTQIYT+++ K+    +++ Y  
Sbjct: 252 PESTTPHALRHSFATHLFLEGADIRVIQELLGHENLSTTQIYTHLDHKS----IIDNYMG 307

Query: 317 THPSITQKD 325
            HP   +K+
Sbjct: 308 FHPQTVKKN 316


>gi|162148139|ref|YP_001602600.1| site-specific tyrosine recombinase XerC [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786716|emb|CAP56299.1| Tyrosine recombinase xerC [Gluconacetobacter diazotrophicus PAl 5]
          Length = 324

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 114/318 (35%), Positives = 170/318 (53%), Gaps = 30/318 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +W+++   ER  S LT+ +Y  D  +FL F+  +    + +  + +LS  ++RA+++   
Sbjct: 12  DWMRD---ERRASPLTIAAYRGDLDRFLDFIGAHVGGTVDLAVLDRLSLADLRAWLAFEH 68

Query: 80  TQ--KIGDRSLKRS-------------LSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            Q   +  R   RS             +S ++SF +YL +R   T      +   +  + 
Sbjct: 69  AQGHALAQRDRGRSSTPDRAARTRARRVSAMRSFYRYLARRHGVTNPAPGLLAAPRTKSP 128

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--- 181
           LPR L+E QAL + D V       T    AR++A+  LLYGCGLRISEAL L  +++   
Sbjct: 129 LPRPLSEAQALDVPDGV--GDLAVTPLGQARDAALFLLLYGCGLRISEALGLDVRDLDHA 186

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
           +    TL ++GKG + R+VP+LP+V + + ++    P  L      PLF G+RG  L P 
Sbjct: 187 LSAGGTLLVRGKGGRERLVPILPAVARVLTDWRARHPAPLP---DAPLFPGVRGGRLQPA 243

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           V QR +R  R   GLP   T H LRHSFATHL+  G DLR+IQ +LGH  LSTTQ YT  
Sbjct: 244 VAQRAMRAWRDMAGLPDHATPHALRHSFATHLMEGGADLRTIQELLGHASLSTTQRYTLA 303

Query: 302 NSKNGGDWMMEIYDQTHP 319
           +       +ME++ + HP
Sbjct: 304 DEAR----LMEVWTRAHP 317


>gi|329114535|ref|ZP_08243294.1| Tyrosine recombinase XerC [Acetobacter pomorum DM001]
 gi|326696015|gb|EGE47697.1| Tyrosine recombinase XerC [Acetobacter pomorum DM001]
          Length = 315

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 112/316 (35%), Positives = 174/316 (55%), Gaps = 26/316 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS-- 76
           Q +L+ + +E+  S LT+++Y+ D  +FL F+  + +    +  +  +S  + RA+++  
Sbjct: 8   QKFLEWMAVEKQASPLTIEAYQGDLARFLGFMTTHLDGLPDMVGLGLISLRDFRAWLAYE 67

Query: 77  ---------KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
                    ++ +     R+  R +S ++SF KYL +R+      I  +   +    LPR
Sbjct: 68  QAEASKPTARKTSSDQATRTRARRVSAVRSFFKYLARRQGVENPAIQLLSTPRTKKPLPR 127

Query: 128 ALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSL--TPQNIMD 183
            L + QAL   +++  L HT  E +    R++A+  LLYGCGLRISEAL+L     ++M 
Sbjct: 128 PLAKDQALAAPEDISDLAHTPMEQQ----RDAALFLLLYGCGLRISEALNLNIADLDVMR 183

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
             + LRI GKG K R+VP+LP V++A+  +    P         PLF GIRGK L P + 
Sbjct: 184 SSNVLRILGKGGKERLVPVLPVVQQALEAWRGRHPAP---TPDAPLFVGIRGKRLQPAIA 240

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           Q+ +R+ R   GLP   T H LRHSFATHL+  G DLR IQ +LGH  LSTTQ YT  + 
Sbjct: 241 QKAMREWRHLSGLPDYVTPHALRHSFATHLMEGGADLRVIQELLGHASLSTTQRYTLADE 300

Query: 304 KNGGDWMMEIYDQTHP 319
                 +++++ + HP
Sbjct: 301 AR----LLDVWTRAHP 312


>gi|68171192|ref|ZP_00544598.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88658398|ref|YP_507161.1| phage integrase family site specific recombinase [Ehrlichia
           chaffeensis str. Arkansas]
 gi|67999386|gb|EAM86029.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88599855|gb|ABD45324.1| site-specific recombinase, phage integrase family [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 311

 Score =  189 bits (479), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 112/307 (36%), Positives = 173/307 (56%), Gaps = 11/307 (3%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W+  ++ ER  +  T+ SY  D  +F+ FL       +T++ I  +   ++R + + R  
Sbjct: 13  WVSWIKKERRYATNTVDSYLRDVNKFIEFLYMCVLRPVTLEDIIGVKVADLRKWFAFRYQ 72

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             I   +  RSLS +K+F +YL +        +  +   K  ++LPR L +     ++D 
Sbjct: 73  ANIEAVTNARSLSALKNFFRYLSRTYNIDGQAVFCLSRPKLKSTLPRTLTQSHIQKIIDY 132

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L    +T WI  R+ A++ LLYGCGLRISEA++L  QNI  ++  L I GK  K RI+
Sbjct: 133 YALL---DTDWIVKRDFALIVLLYGCGLRISEAVNLKFQNIRREE--LLIIGKRSKERIL 187

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           P+LP VR+++ EY   CP+ + LN      +F G+RGK L    F   I+++ + +GLP 
Sbjct: 188 PILPIVRQSLDEYVRCCPYHMELNSVKNEYVFVGVRGKKLKRTYFANRIQKICKEIGLPD 247

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             T H  RHSFATHL   G D+RSIQ +LGH  LSTTQIYT+++ K+    +++ Y   H
Sbjct: 248 VITPHAFRHSFATHLFLGGADIRSIQELLGHANLSTTQIYTHLDHKS----VIDHYKNFH 303

Query: 319 PSITQKD 325
           P + +K+
Sbjct: 304 PQVIKKN 310


>gi|258542904|ref|YP_003188337.1| site-specific tyrosine recombinase XerC [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256633982|dbj|BAH99957.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637042|dbj|BAI03011.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640094|dbj|BAI06056.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643151|dbj|BAI09106.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646206|dbj|BAI12154.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649258|dbj|BAI15199.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652245|dbj|BAI18179.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655302|dbj|BAI21229.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-12]
          Length = 315

 Score =  188 bits (478), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 111/316 (35%), Positives = 174/316 (55%), Gaps = 26/316 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS-- 76
           Q +L+ + +E+  S LT+++Y+ D  +FL F+  + +    +  +  +S  + RA+++  
Sbjct: 8   QKFLEWMAVEKQASPLTIEAYQGDLARFLGFMTTHLDGLPDMIGLGLISLRDFRAWLAYE 67

Query: 77  ---------KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
                    ++ +     R+  R +S ++SF KYL +R+      I  +   +    LPR
Sbjct: 68  QAEASKPTARKTSSDQATRTRARRVSAVRSFFKYLARRQGVENPAIQLLSTPRTKKPLPR 127

Query: 128 ALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSL--TPQNIMD 183
            L + QAL   +++  L HT  E +    R++A+  LLYGCGLRISEAL+L     ++M 
Sbjct: 128 PLAKDQALAAPEDISDLAHTPMEQQ----RDAALFLLLYGCGLRISEALNLNIADLDVMR 183

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
             + LRI GKG K R+VP+LP V++A+  +    P         PLF G+RGK L P + 
Sbjct: 184 SSNVLRILGKGGKERLVPVLPVVQQALEAWRTRHPAP---TPDAPLFVGVRGKRLQPAIA 240

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           Q+ +R+ R   GLP   T H LRHSFATHL+  G DLR IQ +LGH  LSTTQ YT  + 
Sbjct: 241 QKAMREWRHLSGLPDYVTPHALRHSFATHLMEGGADLRVIQELLGHASLSTTQRYTLADE 300

Query: 304 KNGGDWMMEIYDQTHP 319
                 +++++ + HP
Sbjct: 301 AR----LLDVWTRAHP 312


>gi|209542780|ref|YP_002275009.1| site-specific tyrosine recombinase XerC [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530457|gb|ACI50394.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 324

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 113/318 (35%), Positives = 169/318 (53%), Gaps = 30/318 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +W+++   ER  S LT+ +Y  D  +FL F+  +    + +  + +LS  ++RA+++   
Sbjct: 12  DWMRD---ERRASPLTIAAYRGDLDRFLDFIGAHVGGTVDLAVLDRLSLADLRAWLAFEH 68

Query: 80  TQ--KIGDRSLKRS-------------LSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            Q   +  R   RS             +S ++SF +YL +R   T      +   +  + 
Sbjct: 69  AQGHALAQRDRGRSSTPDRAARTRARRVSAMRSFYRYLARRHGVTNPAPGLLAAPRTKSP 128

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--- 181
           LPR L+E QAL + D V       T    AR++A+  LLYGCGLRISEAL L  +++   
Sbjct: 129 LPRPLSEAQALDVPDGV--GDLAVTPLGQARDAALFLLLYGCGLRISEALGLDVRDLDHA 186

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
           +    TL ++GKG + R+VP+LP+V + + ++    P  L      PLF G+RG  L P 
Sbjct: 187 LSAGGTLLVRGKGGRERLVPILPAVARVLTDWRARHPAPLP---DAPLFPGVRGGRLQPA 243

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           V QR +R  R   GLP   T H LRHSFATHL+  G DLR+IQ +LGH  LSTTQ YT  
Sbjct: 244 VAQRAMRAWRDMAGLPDHATPHALRHSFATHLMEGGADLRTIQELLGHASLSTTQRYTLA 303

Query: 302 NSKNGGDWMMEIYDQTHP 319
           +       + E++ + HP
Sbjct: 304 DEAR----LTEVWTRAHP 317


>gi|58039205|ref|YP_191169.1| site-specific tyrosine recombinase XerC [Gluconobacter oxydans
           621H]
 gi|58001619|gb|AAW60513.1| Site-specific recombinase, integrase/recombinase RipX, XerC
           [Gluconobacter oxydans 621H]
          Length = 321

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 113/318 (35%), Positives = 171/318 (53%), Gaps = 21/318 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK- 77
           ++W + L  ER  S  T+++Y  D    L F   +   ++T+  + +LS  ++RA+++  
Sbjct: 12  RDWTEWLTHERRASPRTVEAYRHDVLLALTFFQQHLGAEVTLADLGKLSLADLRAWLAHE 71

Query: 78  --------RRTQKIGDRSLKRS--LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
                   RR      R+  R+  +S ++SF +YL  R   +      +   +    LPR
Sbjct: 72  TARSEQPTRRPTSADSRARSRARHVSALRSFFRYLGLRHDLSNPAPSLLATPRTKKRLPR 131

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQS 186
            L E  A    + +      ET     R+ A+  LLYG GLRI EALSL  +++ +  Q+
Sbjct: 132 PLGEDAARAAAEGI--SDDAETSLAALRDRALFTLLYGTGLRIGEALSLDIRDLTNAGQN 189

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            LR+ GKG K R+VPLLP+V +A+  +    P   +     PLF G+RG  LNPGV QR 
Sbjct: 190 MLRVVGKGGKERLVPLLPAVMEALESWKAAHP---SPTPDAPLFCGVRGGRLNPGVAQRA 246

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +R  R+  GLP S T H LRHSFATHL+  G DLR+IQ ++GH  LSTTQ YT  + K+ 
Sbjct: 247 MRTWRKGEGLPDSATPHALRHSFATHLMEGGADLRTIQELMGHASLSTTQAYTLADEKH- 305

Query: 307 GDWMMEIYDQTHPSITQK 324
              +++++ + HP   Q+
Sbjct: 306 ---LLDVWRKAHPRAGQE 320


>gi|88607956|ref|YP_506332.1| phage integrase family site specific recombinase [Neorickettsia
           sennetsu str. Miyayama]
 gi|88600125|gb|ABD45593.1| site-specific recombinase, phage integrase family [Neorickettsia
           sennetsu str. Miyayama]
          Length = 307

 Score =  186 bits (471), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 120/316 (37%), Positives = 174/316 (55%), Gaps = 16/316 (5%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ME    P +  F +L E   WL  ++     S  TL +Y  D   FL FL+ +  E +  
Sbjct: 1   MECKIDPSV--FTILDEWTRWLGGVKC---FSSNTLVAYSRDLMAFLDFLSTFRGEPVRF 55

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            ++  +   ++RA+++ RR   I  R+  R+LS +KSF KYL K K     ++L +    
Sbjct: 56  TSLDCIDSKDLRAWLASRRKNSISFRTNARALSSVKSFFKYLAKHKGIINEDVLGVVLRF 115

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K N+LPR+L  K+ + L++     +  +T WI  RN A+ YLLYG GLRISEALSLT  +
Sbjct: 116 KPNTLPRSLTFKEIIELIEKF---SFLKTSWIVKRNIALCYLLYGSGLRISEALSLTVAD 172

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           + +  S ++I GKG + R++ LLP VR A+ +Y   CPF  +    L L R   G  L  
Sbjct: 173 LTN--SEIKIIGKGGRERMIRLLPIVRVALSDYIASCPFQPDAGGFLFLDRN--GNKLCR 228

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               R    +RR   LP   T H LRHSFATHLL  G  +R IQ +LGH  L++T++YT 
Sbjct: 229 TAVARAFLSIRRGFNLPDHITPHALRHSFATHLLQEGVGVRKIQELLGHASLASTEVYTK 288

Query: 301 VNSKNGGDWMMEIYDQ 316
           +N+++    +ME Y Q
Sbjct: 289 LNAES----LMEKYKQ 300


>gi|56417058|ref|YP_154132.1| integrase/recombinase ripx [Anaplasma marginale str. St. Maries]
 gi|222475424|ref|YP_002563841.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str.
           Florida]
 gi|56388290|gb|AAV86877.1| integrase/recombinase ripx [Anaplasma marginale str. St. Maries]
 gi|222419562|gb|ACM49585.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str.
           Florida]
          Length = 316

 Score =  182 bits (463), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 113/318 (35%), Positives = 172/318 (54%), Gaps = 14/318 (4%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFL-IFLAFYTEEKITIQTIRQLSYT 69
           S +LL    NWL  L  ER  S  T+ +YE D   F         E  +++Q +++L   
Sbjct: 7   SGDLLSAINNWLCWLREERRYSPNTVAAYERDIMDFYRSVCGEPCERSVSLQEVQELRSA 66

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           E R++++ R  Q     S  R++S ++SF +YL  +     S + N+       SLP+ L
Sbjct: 67  EFRSWLADRFKQGKQSASNARAISVVRSFFRYLHHKCGMKSSVVFNISKPIVRRSLPKVL 126

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            E Q   +++        +  W   R+ A+  LLYGCGLRISEA+++   ++  D+  LR
Sbjct: 127 EEPQMRKVMEE-----PEDLHWTHRRDLAVSALLYGCGLRISEAVNIKFCDLRQDE--LR 179

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYI 247
           + GKG K R++P+LP VR  I EY   CP       +    +F G+RG  L+   F   +
Sbjct: 180 VLGKGSKERVIPILPWVRCIIDEYVASCPHQRVHGASSTEYVFVGLRGGRLSRTYFAYRM 239

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           + LRR +GLP +TT HTLRHSFATHL   G D+R +Q +LGH  L+TTQ+YT+++  +  
Sbjct: 240 KGLRRRIGLPETTTPHTLRHSFATHLFLEGADIRVVQELLGHASLATTQVYTHLDYNS-- 297

Query: 308 DWMMEIYDQTHPSITQKD 325
             ++E Y   HP   +K+
Sbjct: 298 --VIENYRGFHPQTIKKN 313


>gi|255003412|ref|ZP_05278376.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str. Puerto
           Rico]
          Length = 312

 Score =  182 bits (462), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 113/318 (35%), Positives = 172/318 (54%), Gaps = 14/318 (4%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFL-IFLAFYTEEKITIQTIRQLSYT 69
           S +LL    NWL  L  ER  S  T+ +YE D   F         E  +++Q +++L   
Sbjct: 3   SGDLLSAINNWLCWLREERRYSPNTVAAYERDIMDFYRSVCGEPCERSVSLQEVQELRSA 62

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           E R++++ R  Q     S  R++S ++SF +YL  +     S + N+       SLP+ L
Sbjct: 63  EFRSWLADRFKQGKQSASNARAISVVRSFFRYLHHKCGMKSSVVFNISKPIVRRSLPKVL 122

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            E Q   +++        +  W   R+ A+  LLYGCGLRISEA+++   ++  D+  LR
Sbjct: 123 EEPQMRKVMEE-----PEDLHWTHRRDLAVSALLYGCGLRISEAVNIKFCDLRQDE--LR 175

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYI 247
           + GKG K R++P+LP VR  I EY   CP       +    +F G+RG  L+   F   +
Sbjct: 176 VLGKGSKERVIPILPWVRCIIDEYVASCPHQRVHGASSTEYVFVGLRGGRLSRTYFAYRM 235

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           + LRR +GLP +TT HTLRHSFATHL   G D+R +Q +LGH  L+TTQ+YT+++  +  
Sbjct: 236 KGLRRRIGLPETTTPHTLRHSFATHLFLEGADIRVVQELLGHASLATTQVYTHLDYNS-- 293

Query: 308 DWMMEIYDQTHPSITQKD 325
             ++E Y   HP   +K+
Sbjct: 294 --VIENYRGFHPQTIKKN 309


>gi|255004532|ref|ZP_05279333.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str.
           Virginia]
          Length = 311

 Score =  182 bits (461), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 113/318 (35%), Positives = 174/318 (54%), Gaps = 15/318 (4%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFL-IFLAFYTEEKITIQTIRQLSYT 69
           S +LL    NWL  L  ER  S  T+ +YE D   F         E  +++Q +++L   
Sbjct: 3   SGDLLSAINNWLCWLREERRYSPNTVAAYERDIMDFYRSVCGEPCERSVSLQEVQELRSA 62

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           E R++++ R  Q     S  R++S ++SF +YL  +     S + N + + +  SLP+ L
Sbjct: 63  EFRSWLADRFKQGKQSASNARAISVVRSFFRYLHHKCGMKSSVVFNTKPIVR-RSLPKVL 121

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            E Q   +++        +  W   R+ A+  LLYGCGLRISEA+++   ++  D+  LR
Sbjct: 122 EEPQMRKVMEE-----PEDLHWTHRRDLAVSALLYGCGLRISEAVNIKFCDLRQDE--LR 174

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYI 247
           + GKG K R++P+LP VR  I EY   CP       +    +F G+RG  L+   F   +
Sbjct: 175 VLGKGSKERVIPILPWVRCIIDEYVASCPHQRVHGASSTEYVFVGLRGGRLSRTYFAYRM 234

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           + LRR +GLP +TT HTLRHSFATHL   G D+R +Q +LGH  L+TTQ+YT+++  +  
Sbjct: 235 KGLRRRIGLPETTTPHTLRHSFATHLFLEGADIRVVQELLGHASLATTQVYTHLDYNS-- 292

Query: 308 DWMMEIYDQTHPSITQKD 325
             ++E Y   HP   +K+
Sbjct: 293 --VIENYRGFHPQTIKKN 308


>gi|218673354|ref|ZP_03523023.1| site-specific tyrosine recombinase XerC [Rhizobium etli GR56]
          Length = 199

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 92/200 (46%), Positives = 131/200 (65%), Gaps = 2/200 (1%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N L  I    L+ ER  WL+NL  ER LS+ TL +YE DTRQFL FL  +    +T+  I
Sbjct: 2   NELLVIADPRLMAERAAWLENLARERRLSEHTLDAYERDTRQFLTFLTGHLAGPVTLSDI 61

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           R+L   + RAF++ RR Q  G RSL R+L+G++S L++L+K+ +   +    +R+ K+  
Sbjct: 62  RELRPADFRAFLAARRKQGSGARSLGRNLAGLRSLLRHLEKKGLVNAAGAAAIRSPKQPK 121

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           SLP+ L++ QA+T+V N      H+  WI AR++A++ LLYGCGLRISEAL L P ++  
Sbjct: 122 SLPKPLSDTQAITVVSNE--AQLHDEPWIAARDAAVMTLLYGCGLRISEALDLVPADLPT 179

Query: 184 DQSTLRIQGKGDKIRIVPLL 203
             +TLRI GKG+K R+VPLL
Sbjct: 180 GAATLRITGKGNKTRLVPLL 199


>gi|329847560|ref|ZP_08262588.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19]
 gi|328842623|gb|EGF92192.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19]
          Length = 303

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/305 (38%), Positives = 171/305 (56%), Gaps = 13/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           R  W   L+ +R  S  TL +Y    R +  +L  +  E  ++  + +++  ++R +++ 
Sbjct: 7   RTAWFGWLKGQRRCSAHTLAAYGHAFRGYTDYLRQHWGEA-SLDDVARVTSADLRGWMAY 65

Query: 78  RRTQK--IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            R ++  +  RSL + LS +KSF  YL          +  MR  +   +LPR LNE QA+
Sbjct: 66  LRGKENPLSARSLAQHLSAVKSFHSYLDLHLDRGNVQVGLMRGPRLKATLPRPLNEDQAI 125

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKG 194
            L+    +    +  W ++R+ A+  LLYG GLRISEALSLT  +  + D  +LRI GKG
Sbjct: 126 GLLAETRMDADRD-DWENSRDEAVYMLLYGLGLRISEALSLTVADTPLGD--SLRITGKG 182

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +K+R++P+L +VR+AI  Y    PF L    +L  FR  RG  L+P   Q  ++ LR  L
Sbjct: 183 NKMRVLPVLEAVREAIERYKSQQPFILAATDRL--FRAKRGGELSPRHVQATMQHLRSRL 240

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           GL    T H LRHSFATH+L +G DLRSIQ +LGH  LSTTQ YT V+++     ++  Y
Sbjct: 241 GLSDRATPHALRHSFATHMLGSGADLRSIQELLGHASLSTTQKYTQVDAER----LLSAY 296

Query: 315 DQTHP 319
              HP
Sbjct: 297 AAAHP 301


>gi|254796806|ref|YP_003081643.1| site-specific recombinase, phage integrase family [Neorickettsia
           risticii str. Illinois]
 gi|254590046|gb|ACT69408.1| site-specific recombinase, phage integrase family [Neorickettsia
           risticii str. Illinois]
          Length = 307

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/316 (36%), Positives = 173/316 (54%), Gaps = 16/316 (5%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ME    P +  + +L E   WL +++     S  TL +Y  DT  FL FL+ +  E +  
Sbjct: 1   MECRIDPSV--YAILDEWTRWLGSVKC---FSSNTLVAYSRDTIAFLDFLSTFRGESVNC 55

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            ++  +   ++RA+++ RR   I  R+  R+LS +KSF +YL K       ++L +    
Sbjct: 56  ASLEGIDDKDLRAWLASRRKNSISFRTNARALSSVKSFFRYLAKHNGIINEDVLGVVLRF 115

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K N+LPR+L  K+ + L++     +  +T WI  RN A+ YLLYG GLRISEALSLT  +
Sbjct: 116 KPNTLPRSLTFKEIIELIEKF---SFLKTGWIVKRNIALCYLLYGSGLRISEALSLTVAD 172

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           + + +  ++I GKG + R++ LLP VR A+ +Y   CPF L+    L L R   G  L  
Sbjct: 173 LANTE--IKIMGKGSRERMIRLLPIVRVALADYIASCPFQLDGGGFLFLDRN--GNKLCR 228

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                    +RR   L    T H LRHSFATHLL  G  +R IQ +LGH  L++T +YT 
Sbjct: 229 TAVAGAFLSIRRRFNLSNHITPHALRHSFATHLLQEGVGVRKIQELLGHASLASTAVYTK 288

Query: 301 VNSKNGGDWMMEIYDQ 316
           +N+++    +ME Y Q
Sbjct: 289 LNAES----LMEKYRQ 300


>gi|225630477|ref|YP_002727268.1| site-specific recombinase, phage integrase family [Wolbachia sp.
           wRi]
 gi|225592458|gb|ACN95477.1| site-specific recombinase, phage integrase family [Wolbachia sp.
           wRi]
          Length = 306

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 112/308 (36%), Positives = 170/308 (55%), Gaps = 10/308 (3%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + W + L   R  S  TL+SY  D +  + FL  +   ++ + T++ LS  E+R++++ R
Sbjct: 8   EKWYEWLRCNRSYSPNTLESYMRDLKDLISFLNTHIGGEVNVGTLKNLSIPELRSWLTSR 67

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +  RS  R+LS I++F KY+K         + ++    +  +LP+AL+     TL+
Sbjct: 68  YARGVNARSNTRALSVIRNFFKYIKNNHNIDNEAVFSLSRPIQRRTLPKALSIPNIKTLL 127

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             + L    E  W+  R  AI+ LLYG GLRISEAL+L   +I  +  +L + GKGDK R
Sbjct: 128 KEMKLSDLGEP-WVVKREIAIIVLLYGTGLRISEALNLRVSDI--NNESLIVTGKGDKQR 184

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            V +LP V+K I EY   CP+   L+    LF G+RGK L        ++++RR L LP 
Sbjct: 185 QVFILPVVKKCIQEYIKACPY---LDEAQHLFVGVRGKKLGRTYVANRLQKIRRMLNLPE 241

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H  RHSFATHLL    D+RSIQ +LGH  L TTQIYT++N ++    +  +Y    
Sbjct: 242 ILSPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQIYTHLNYQD----VFNMYKNFQ 297

Query: 319 PSITQKDK 326
             + +K K
Sbjct: 298 QGLEKKSK 305


>gi|148553149|ref|YP_001260731.1| phage integrase family protein [Sphingomonas wittichii RW1]
 gi|148498339|gb|ABQ66593.1| phage integrase family protein [Sphingomonas wittichii RW1]
          Length = 308

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 109/299 (36%), Positives = 166/299 (55%), Gaps = 11/299 (3%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W  +L  +R  S+ T+++Y     + + FL  +    +    + +L   ++R ++++RR 
Sbjct: 19  WADHLRRDRRRSEHTVRAYLATAHRLIAFLGRHRGAAVDGALLARLDRGDLRGYLAERRG 78

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + + + S  R LS +++FL Y+ +R+   +   +    +KK   +PR +       + ++
Sbjct: 79  EGLSNVSTARELSAVRNFLDYVAEREGAAKPVKVKGPRIKKG--VPRPVAPDDIAAIAED 136

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                S    WI AR+ A+L LLYG GLRI EA++LT  +I+    TL + GK  K RIV
Sbjct: 137 AA--ESAAEPWIAARDEAVLLLLYGAGLRIGEAMALT-GDILPLGDTLSVTGKRAKTRIV 193

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+L  VR+AI  Y  L P        L  FRG RG PL P + +R +R  R  LGL   T
Sbjct: 194 PMLAPVREAIERYVALSPHGAAPGEIL--FRGARGGPLAPELIRRAMRAARVRLGLGERT 251

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           T H LRHSFATHLL  G DLRS+Q +LGH  LS+TQ+YT V++ +    +M++Y   HP
Sbjct: 252 TPHALRHSFATHLLGRGADLRSLQELLGHASLSSTQVYTGVDAAH----LMDVYRNAHP 306


>gi|58617409|ref|YP_196608.1| integrase/recombinase [Ehrlichia ruminantium str. Gardel]
 gi|58417021|emb|CAI28134.1| Integrase/recombinase [Ehrlichia ruminantium str. Gardel]
          Length = 318

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 110/315 (34%), Positives = 173/315 (54%), Gaps = 12/315 (3%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL     +W   +E E+  S  T+ SY  D  + + FL   T   +T+  +  +   ++R
Sbjct: 11  ELYDIVNDWKIWMEQEKRYSLNTVVSYVRDLDKLIEFLHKSTGCSVTLNDLVHVKIGDLR 70

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            + + R    +   +  RSLS +++F +YL +        +  +       +LP+ L   
Sbjct: 71  KWFASRYQCGVEAVTNARSLSALRNFFRYLSRMYYIDSQAVFYLSRPHLKKTLPKVLAGS 130

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               +++    +      W+D RN AI+ LLYG G RISE ++L  Q++ +D+  L I G
Sbjct: 131 HIEIILN---YYKQLPQNWVDMRNFAIMMLLYGSGFRISEVVNLKFQDVREDR--LFITG 185

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           KG+K R+VP+L  V K++ +Y + CP+ L    N Q  +F G+RGK L+   F   +++L
Sbjct: 186 KGNKERVVPILSVVYKSLCQYIECCPYYLGARPNNQY-IFVGVRGKKLSRTHFANIMQKL 244

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           R  +GLP  TTAHT RHSFATHL   G D+RS+Q +LGH  LSTTQIYT+++ K+    +
Sbjct: 245 RAEMGLPDITTAHTFRHSFATHLFIGGADIRSVQELLGHTSLSTTQIYTHLDHKS----I 300

Query: 311 MEIYDQTHPSITQKD 325
           +E Y   HP I +K+
Sbjct: 301 IEHYKAFHPQIVKKN 315


>gi|57239387|ref|YP_180523.1| integrase/recombinase [Ehrlichia ruminantium str. Welgevonden]
 gi|57161466|emb|CAH58391.1| putative integrase/recombinase XerD or XerC [Ehrlichia ruminantium
           str. Welgevonden]
          Length = 312

 Score =  179 bits (453), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 108/314 (34%), Positives = 171/314 (54%), Gaps = 10/314 (3%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL     +W   +E E+  S  T+ SY  D  + + FL   T   +T+  +  +   ++R
Sbjct: 5   ELYDIVNDWKIWMEQEKRYSLNTVVSYVRDLDKLIKFLHKSTGCSVTLNDLVHVKIGDLR 64

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            + + R    +   +  RSLS +++F +YL +        +  +       +LP+ L   
Sbjct: 65  KWFASRYQCGVEAVTNARSLSALRNFFRYLSRMYYIDSQAVFYLSRPHLKKTLPKVLAGS 124

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               +++    +      W+D RN AI+ LLYG G RISE ++L  Q++ +D+  L I G
Sbjct: 125 HIEIILN---YYKQLPQNWVDMRNFAIMMLLYGSGFRISEVVNLKFQDVREDR--LFITG 179

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG+K R+VP+L  V K++ +Y + CP+ L        +F G+RGK L+   F   +++LR
Sbjct: 180 KGNKERVVPILSMVYKSLCQYIECCPYYLGARPSNQYIFVGVRGKKLSRTHFANIMQKLR 239

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             +GLP  TTAHT RHSFATHL   G D+RS+Q +LGH  LSTTQIYT+++ K+    ++
Sbjct: 240 AEMGLPDITTAHTFRHSFATHLFIGGADIRSVQELLGHTSLSTTQIYTHLDHKS----II 295

Query: 312 EIYDQTHPSITQKD 325
           E Y   HP I +K+
Sbjct: 296 EHYKAFHPQIVKKN 309


>gi|225677009|ref|ZP_03788023.1| site-specific recombinase, phage integrase [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
 gi|225590948|gb|EEH12161.1| site-specific recombinase, phage integrase [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
          Length = 310

 Score =  178 bits (452), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 112/309 (36%), Positives = 174/309 (56%), Gaps = 9/309 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + W + L   R  S  TL+SY  D +  + FL  +   ++ + T+ +LS  E+R++++ R
Sbjct: 8   EKWYEWLRCNRSYSPNTLESYMRDLKDLISFLNTHIGGEVNVGTLEKLSVPELRSWLTSR 67

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +  RS  R+LS I++F KY+K         + ++    +  +LP+AL+     TL+
Sbjct: 68  YARGVNARSNARALSVIRNFFKYIKNNYNIDNEAVFSLSRPIQRRTLPKALSIPNIKTLL 127

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             + L    E+ W+  R  AI+ LLY  GLRISEAL+L   +I ++  +L + GKGDK R
Sbjct: 128 KEMKLSDLGES-WVVKREIAIIVLLYSTGLRISEALNLRVSDINNE--SLIVTGKGDKQR 184

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
            V +LP V+K I EY   CP+ L +N +   LF G+RGK L        ++++RR L LP
Sbjct: 185 QVFILPVVKKCIQEYVKTCPY-LGINDEAQYLFLGVRGKKLGRTYVANRLQKIRRILNLP 243

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H  RHSFATHLL    D+RSIQ +LGH  L TTQ+YT++N ++    +  +Y   
Sbjct: 244 EILSPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQVYTHLNYQD----VFNMYKNF 299

Query: 318 HPSITQKDK 326
             S+ +K K
Sbjct: 300 QQSLEKKPK 308


>gi|58579355|ref|YP_197567.1| integrase/recombinase [Ehrlichia ruminantium str. Welgevonden]
 gi|58417981|emb|CAI27185.1| Integrase/recombinase [Ehrlichia ruminantium str. Welgevonden]
          Length = 318

 Score =  178 bits (452), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 108/314 (34%), Positives = 171/314 (54%), Gaps = 10/314 (3%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL     +W   +E E+  S  T+ SY  D  + + FL   T   +T+  +  +   ++R
Sbjct: 11  ELYDIVNDWKIWMEQEKRYSLNTVVSYVRDLDKLIKFLHKSTGCSVTLNDLVHVKIGDLR 70

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            + + R    +   +  RSLS +++F +YL +        +  +       +LP+ L   
Sbjct: 71  KWFASRYQCGVEAVTNARSLSALRNFFRYLSRMYYIDSQAVFYLSRPHLKKTLPKVLAGS 130

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               +++    +      W+D RN AI+ LLYG G RISE ++L  Q++ +D+  L I G
Sbjct: 131 HIEIILN---YYKQLPQNWVDMRNFAIMMLLYGSGFRISEVVNLKFQDVREDR--LFITG 185

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG+K R+VP+L  V K++ +Y + CP+ L        +F G+RGK L+   F   +++LR
Sbjct: 186 KGNKERVVPILSMVYKSLCQYIECCPYYLGARPSNQYIFVGVRGKKLSRTHFANIMQKLR 245

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             +GLP  TTAHT RHSFATHL   G D+RS+Q +LGH  LSTTQIYT+++ K+    ++
Sbjct: 246 AEMGLPDITTAHTFRHSFATHLFIGGADIRSVQELLGHTSLSTTQIYTHLDHKS----II 301

Query: 312 EIYDQTHPSITQKD 325
           E Y   HP I +K+
Sbjct: 302 EHYKAFHPQIVKKN 315


>gi|190570559|ref|YP_001974917.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|190356831|emb|CAQ54200.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
          Length = 306

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 109/308 (35%), Positives = 172/308 (55%), Gaps = 10/308 (3%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + W   L+  R  S  TL+SY  D +  + FL  +  E++ + ++ +LS  E+R++ + R
Sbjct: 8   EKWYDWLKYNRSYSPNTLESYMRDLKDLISFLNTHIGEEVNVGSLEKLSIPELRSWFTSR 67

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +  RS  R+LS I++F KY+K         + ++    +  +LP+AL+     TL+
Sbjct: 68  YARGVNARSNTRALSVIRNFFKYIKNNYEINNEAVFSLSRPIQRRTLPKALSISNIETLL 127

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             + L    E  W+  R  AI+ LLYG GLRI+EAL+L   +I ++  +L + GKGDK R
Sbjct: 128 KEMKLPDLGEP-WVVKREIAIVVLLYGTGLRITEALNLKVSDISNE--SLIVTGKGDKQR 184

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            V +LP V+K I +Y   CP   + +    LF G+RGK L        ++++RR+L LP 
Sbjct: 185 QVFILPVVKKCIQKYIKACP---HFDEAGHLFVGVRGKKLGRTYVANRLQKIRRFLNLPE 241

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H  RHSFATHLL    D+RSIQ +LGH  L TTQ+YT++N ++    +  +Y    
Sbjct: 242 ILSPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQVYTHLNYQD----VFNMYKNFQ 297

Query: 319 PSITQKDK 326
            S+ +K K
Sbjct: 298 KSLNKKSK 305


>gi|242280181|ref|YP_002992310.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
 gi|242123075|gb|ACS80771.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
          Length = 319

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/317 (35%), Positives = 172/317 (54%), Gaps = 22/317 (6%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           NNLPE V        Q ++  L++E+  S  TL+SY  D  QF  FL      K T+   
Sbjct: 9   NNLPEPV--------QVFMTYLDVEKRSSAATLRSYAKDISQFEEFL---ETRKKTLAVP 57

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
            +++   +RAF++K   Q++   ++ R LS ++SF KY+ K +      ++ +RN K+  
Sbjct: 58  EKITSDLVRAFLAKLHGQRLAKSTMSRKLSSLRSFFKYMTKHRFIQNDPMVGIRNPKQEI 117

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
             PR+LN  QA+ L+D    H   E    D R+ A+  +LYG GLR+SEA++L   +I  
Sbjct: 118 RHPRSLNVDQAVNLMD---AHVGDEP--ADKRDLALAEMLYGSGLRVSEAITLDLFDIDT 172

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGV 242
               +R+ GKG+K R+ PL  +  KA+ +Y  +       L  Q  LF G RG  +N   
Sbjct: 173 SSGVVRVSGKGNKERLSPLSDAACKAVNDYLAVRAELGPALEEQ-ALFVGNRGGRINRRQ 231

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             R + ++    GL      H LRHSFA+H+L +G D+RS+Q +LGH  LSTTQ YT++N
Sbjct: 232 VNRILARMAEGAGLHEGVHPHMLRHSFASHMLQSGADMRSVQELLGHEHLSTTQRYTHLN 291

Query: 303 SKNGGDWMMEIYDQTHP 319
            +     +M +YD+ HP
Sbjct: 292 LQ----QIMNVYDKAHP 304


>gi|42520593|ref|NP_966508.1| phage integrase family site specific recombinase [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|42410332|gb|AAS14442.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 309

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/308 (36%), Positives = 169/308 (54%), Gaps = 7/308 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + W + L   R  S  TL+SY  D +  + FL  +   ++ + T+ +LS  E+R++++ R
Sbjct: 8   EKWYEWLRRNRSYSPNTLESYMRDLKDLISFLNTHIGGEVNVGTLEKLSVPELRSWLTSR 67

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +  RS  R+LS I++F KY+K         + ++    +  +LP+AL+     TL+
Sbjct: 68  YARGVNARSNTRALSVIRNFFKYIKNNHNIDNEAVFSLSRPIQRRTLPKALSIPDIKTLL 127

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             + L    E+ W+  R  AI+ LLY  GLRISEAL+L   +I  +  +L + GKGDK R
Sbjct: 128 KEMKLSDLGES-WVVKREIAIIVLLYSTGLRISEALNLRVSDI--NNESLIVTGKGDKQR 184

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            V +LP V+K I EY   CP+    N    LF G+RGK L        ++++RR L LP 
Sbjct: 185 QVFILPVVKKCIQEYVKACPYLGTNNETQYLFLGVRGKKLGRTYVANRLQKIRRMLNLPE 244

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H  RHSFATHLL    D+RSIQ +LGH  L TTQIYT++N ++    +  +Y    
Sbjct: 245 ILSPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQIYTHLNYQD----VFNMYKNFQ 300

Query: 319 PSITQKDK 326
             + +K K
Sbjct: 301 QGLEKKSK 308


>gi|296114852|ref|ZP_06833500.1| site-specific tyrosine recombinase XerC [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295978558|gb|EFG85288.1| site-specific tyrosine recombinase XerC [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 324

 Score =  176 bits (446), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 111/323 (34%), Positives = 161/323 (49%), Gaps = 37/323 (11%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +W+ +   ER  S  T ++Y  D  +FL FL  +   ++ +  +  LS  ++RA+++   
Sbjct: 12  DWMAD---ERRASPRTTEAYRGDLHRFLDFLGGHLGGEVDVAALDALSLADLRAWLAFEH 68

Query: 80  TQKIGDRSLKR-------------SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
            Q +  R   R              +S ++SF +YL +           +   +   +LP
Sbjct: 69  DQALRPRPGHRVTTRDRAARTRARRVSALRSFFRYLARHHGVDNPAPALLAAPRVKKTLP 128

Query: 127 RALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--- 181
           R L+ + AL +   V  + HT         R+ A+  LLYGCGLRISEALSL   ++   
Sbjct: 129 RPLSHEDALEVPQGVGEIAHTPMARM----RDGALFLLLYGCGLRISEALSLDVADLDRA 184

Query: 182 -----MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
                  D+  LRI GKG K R+VPLLP V +A+ E+    P  +      PLF G+RG 
Sbjct: 185 MALGGGADEGVLRIMGKGGKERMVPLLPVVGRALREWRRHHPAPVA---GAPLFPGVRGG 241

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L   V QR +R  R   GLP   T H LRHSFATHL+  G DLR IQ +LGH  LSTTQ
Sbjct: 242 RLQAAVAQRAMRTWRHMAGLPDHATPHALRHSFATHLMEGGADLRVIQELLGHASLSTTQ 301

Query: 297 IYTNVNSKNGGDWMMEIYDQTHP 319
            YT  +       +++++ + HP
Sbjct: 302 RYTLADESR----LLDVWTRAHP 320


>gi|78356628|ref|YP_388077.1| site-specific recombinase XerD-like [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219033|gb|ABB38382.1| Site-specific recombinase XerD-like protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 332

 Score =  176 bits (445), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 113/314 (35%), Positives = 170/314 (54%), Gaps = 26/314 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  L +E+G S  T++ Y CD  QF  FL       +++ T   +    I  F++    
Sbjct: 22  YMGYLALEKGYSSATVRGYACDLAQFEDFL---QRRDMSLDTPADIVPRTIHDFLADLHR 78

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKK----RKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           Q +G  S+ R LS ++ F +YL +    R + TE  I N R  ++S   PRALN  QA  
Sbjct: 79  QHVGKSSMGRKLSALRGFFRYLARKGFIRSVPTE-GITNPRQAQRS---PRALNVDQAYA 134

Query: 137 LVDN---------VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           ++D          V +  +H+ + +  R+ A+  LLYG GLRISEAL+L   +       
Sbjct: 135 VLDTRTQAASRAQVHVRQAHKREQL-TRDLALAELLYGSGLRISEALALDLCHTDPSSGL 193

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           +++ GKG K RIVPL  + R+A+  + D+    D++   +  +F G RG  LN     R 
Sbjct: 194 IKVTGKGSKERIVPLSDTSRQALQLWLDVRETLDVSGGAEQAVFLGARGGRLNRRQALRI 253

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           I  L R  GLP + + H LRHSFATHLL  G D+RS+Q +LGH RL+TTQ YT++  +  
Sbjct: 254 IEDLCRAAGLPQAVSPHALRHSFATHLLEAGADMRSVQELLGHERLTTTQRYTHLTLRK- 312

Query: 307 GDWMMEIYDQTHPS 320
              ++E+YD+ HP 
Sbjct: 313 ---IVEVYDRAHPG 323


>gi|317153571|ref|YP_004121619.1| tyrosine recombinase XerC [Desulfovibrio aespoeensis Aspo-2]
 gi|316943822|gb|ADU62873.1| tyrosine recombinase XerC [Desulfovibrio aespoeensis Aspo-2]
          Length = 313

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/310 (33%), Positives = 173/310 (55%), Gaps = 16/310 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L +L +E+G S+ T++SY  D  QF  FL      K +++   +++   +R+F+++ 
Sbjct: 15  RGFLAHLAVEKGYSEATIRSYGTDLEQFDGFL---KRSKRSLEHPERVTRDHVRSFLAEM 71

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
              ++G  ++ R LS ++++ +YL + ++ T      +RN K+    P+ LN  QA+ ++
Sbjct: 72  HRLRLGKATMGRKLSSLRAYFRYLLRHRMITTDPTATIRNPKQEKRHPQVLNVDQAVAMM 131

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           + ++     E      R+ A+  +LYG GLRISEA+ L   ++  D   +R+ GKG K R
Sbjct: 132 EAMI-----EPDPEGLRDLALAEVLYGSGLRISEAVGLDLNDV--DSDVIRVTGKGSKER 184

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGL 256
           IVPL  +  K I  Y +     +  N  +  LF  +R GK LN     R + +L    GL
Sbjct: 185 IVPLSDAAVKRIRRYMEQRHALIGDNYAEQALFLSVRSGKRLNRRQANRIVAKLGGLAGL 244

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           P     H LRHSFATH+L  G DLRS+Q +LGH RL+TTQ YT+++ ++    +M++YDQ
Sbjct: 245 PKDVHPHMLRHSFATHMLEAGADLRSVQELLGHERLTTTQRYTHLDMQH----LMQVYDQ 300

Query: 317 THPSITQKDK 326
            HP   +  K
Sbjct: 301 AHPRAKEDGK 310


>gi|323697647|ref|ZP_08109559.1| integrase family protein [Desulfovibrio sp. ND132]
 gi|323457579|gb|EGB13444.1| integrase family protein [Desulfovibrio desulfuricans ND132]
          Length = 316

 Score =  172 bits (435), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 168/303 (55%), Gaps = 16/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  LE+E+G S  T++SY  D  QF  FL      K +++   +L+   +R F+++ 
Sbjct: 16  RGFLAFLEVEKGYSPATIRSYGTDLEQFEEFL---RGRKASLERPARLNRDHVRGFLAEL 72

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +++   S+ R LS ++++ KYL + K+ T+  +  +RN K+    P+ LN  QA++L+
Sbjct: 73  HRRQMTKTSMGRKLSSLRAYFKYLLRHKVITKDPVAGIRNPKQEKHHPQVLNVDQAVSLM 132

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +  +     E      R+ A+  +LYG GLRISEA+ L   ++  D   +R+ GKG K R
Sbjct: 133 EARV-----EPDPEGLRDVALAEVLYGSGLRISEAIGLDLNDV--DSDVIRVTGKGSKER 185

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGL 256
           IVPL  +    I  Y       L  N  +  LF   R GK L+     R + +L +  GL
Sbjct: 186 IVPLSDAAVARIRRYLGQRHAFLKGNYAEQALFLSSRAGKRLDRRQANRIVARLGKLAGL 245

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           PL    HTLRHSFATH+L  G DLRS+Q +LGH  L+TTQ YT+++ +     +M++YD 
Sbjct: 246 PLDVHPHTLRHSFATHMLEAGADLRSVQELLGHENLTTTQRYTHLDMQR----IMQVYDH 301

Query: 317 THP 319
            HP
Sbjct: 302 AHP 304


>gi|298529953|ref|ZP_07017355.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509327|gb|EFI33231.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 312

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 114/318 (35%), Positives = 176/318 (55%), Gaps = 14/318 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++  L  E   +L +L++E+G S  TLQ+Y  D  Q+  FL   T  K T  + + +   
Sbjct: 4   IADSLPDEATAFLAHLDVEKGFSGATLQAYSKDLLQWEEFL--QTRNK-TCASPQDIVRA 60

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++ AF+ +     +   S+ R LS +++F ++L+K+KI  ++    +RN K+    P  L
Sbjct: 61  DVHAFLVQMHKLNLSKSSMARKLSSLRTFFRFLQKQKIIQQNPCTGVRNPKQEKPQPGVL 120

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           N  QAL +V   L     E    + R+ A+  +LYG GLR+SEALSL   ++   QS +R
Sbjct: 121 NVDQALEMVQAQL-----EPSPRNTRDLALAEVLYGSGLRVSEALSLDLDDVDQGQSLVR 175

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           +QGKG K R+  L     + + +Y  L   F+ +L  +  LF G+RG  L+     R I+
Sbjct: 176 VQGKGRKERLAFLTRPGLERLSQYIALRHAFEPDLR-EKALFLGMRGGRLHRREAVRIIQ 234

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L +        + HTLRHSFATH+L  G DLR +Q +LGH R+STTQ YT++N     D
Sbjct: 235 RLGQIFARAQGVSPHTLRHSFATHMLQAGADLRIVQELLGHSRISTTQRYTHLNL----D 290

Query: 309 WMMEIYDQTHPSITQKDK 326
            +M+ YD+ HP   +KDK
Sbjct: 291 QVMQTYDKAHPLAREKDK 308


>gi|304322147|ref|YP_003855790.1| integrase/recombinase XerC [Parvularcula bermudensis HTCC2503]
 gi|303301049|gb|ADM10648.1| integrase/recombinase XerC, putative [Parvularcula bermudensis
           HTCC2503]
          Length = 315

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 103/299 (34%), Positives = 163/299 (54%), Gaps = 8/299 (2%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L++LE +   S  T+++Y     +F  F   +   ++ +  I +    + RAF++ RR 
Sbjct: 19  FLRHLETQTRASPYTIRNYRQTIDRFSDFARRHRGGEVDLVDIARWRTADFRAFLADRRA 78

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + I   +L+  LS +K   +++ +R  +  + +  +R  K    LPR + +  AL L + 
Sbjct: 79  EGIAPPTLRLDLSALKQLFRFIDRRTGSETTPLYALRTPKAPRRLPRPIGQAPALALAEA 138

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                 H   W   R+ A+  LLYG GLR+SEAL+L  +++     +LR+ GKG K+R V
Sbjct: 139 A----EHTQDWTVHRDRALFALLYGAGLRLSEALALDRRDLPPRGVSLRVLGKGAKMRDV 194

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           PLL  VR  I  Y D     +  N    LF G +G+ L+PGV QR +R+ R  LGL    
Sbjct: 195 PLLDVVRTRIDTYLDHRDKAIPGNTAPALFLGAKGRRLSPGVAQRALRRERATLGLSDDA 254

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           T H LRH+FATHLL+ G DLR++Q++LGH  L TTQ YT +++      ++ ++   HP
Sbjct: 255 TPHALRHAFATHLLAAGTDLRTLQTLLGHSSLKTTQGYTEIDAGR----LLAVHAAAHP 309


>gi|303248297|ref|ZP_07334559.1| integrase family protein [Desulfovibrio fructosovorans JJ]
 gi|302490322|gb|EFL50234.1| integrase family protein [Desulfovibrio fructosovorans JJ]
          Length = 331

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 102/306 (33%), Positives = 158/306 (51%), Gaps = 9/306 (2%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L  ++G S  TL +Y  D  QF  FL       I++ T  +++    R F+++   
Sbjct: 25  FLDYLAAQKGYSPATLAAYGVDLDQFEEFL---RGRGISLATPEKVAREHGRGFLAELHR 81

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           ++    S+ R LS ++ F +Y+ ++K+     +  ++N K     P+ALN  +A+ LV  
Sbjct: 82  RREAKTSMGRKLSALRGFFRYMLRKKLVAADPLAGLKNPKTDKRQPKALNVDEAVALVSP 141

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                + +      R+ A+  LLYG GLR++EA+ L   ++   Q   R+ GKG K R+ 
Sbjct: 142 APGAPAADGSREACRDLALAELLYGSGLRVAEAVGLDLDDVSIAQGVARVYGKGGKERLA 201

Query: 201 PLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           PL  + R+ + EY      F  +   Q   F G RG  LN     R +  L R  G+   
Sbjct: 202 PLSDASRERLREYAMRRAEFTPDPREQA-FFLGSRGGRLNRRQAARIVDALAREAGIAKH 260

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           T  H LRHSFATHLL +G D+RS+Q +LGH RLSTTQ YT++        +M++YD+ HP
Sbjct: 261 THPHMLRHSFATHLLESGADMRSVQELLGHARLSTTQRYTHLELAR----IMQVYDKAHP 316

Query: 320 SITQKD 325
              + D
Sbjct: 317 RSDEAD 322


>gi|58697179|ref|ZP_00372594.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|58536507|gb|EAL59887.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Drosophila simulans]
          Length = 278

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 101/264 (38%), Positives = 152/264 (57%), Gaps = 6/264 (2%)

Query: 42  DTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY 101
           D +  + FL  +   ++ + T++ LS  E+R++++ R  + +  RS  R+LS I++F KY
Sbjct: 3   DLKDLISFLNTHIGGEVNVGTLKNLSIPELRSWLTSRYARGVNARSNTRALSVIRNFFKY 62

Query: 102 LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
           +K         + ++    +  +LP+AL+     TL+  + L    E  W+  R  AI+ 
Sbjct: 63  IKNNHNIDNEAVFSLSRPIQRRTLPKALSIPNIKTLLKEMKLSDLGEP-WVVKREIAIIV 121

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           LLYG GLRISEAL+L   +I  +  +L + GKGDK R V +LP V+K I EY   CP+  
Sbjct: 122 LLYGTGLRISEALNLRVSDI--NNESLIVTGKGDKQRQVFILPVVKKCIQEYIKACPY-- 177

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
            L+    LF G+RGK L        ++++RR L LP   + H  RHSFATHLL    D+R
Sbjct: 178 -LDEAQHLFVGVRGKKLGRTYVANRLQKIRRMLNLPEILSPHAFRHSFATHLLQEDIDIR 236

Query: 282 SIQSILGHFRLSTTQIYTNVNSKN 305
           SIQ +LGH  L TTQIYT++N ++
Sbjct: 237 SIQQLLGHSSLETTQIYTHLNYQD 260


>gi|283852866|ref|ZP_06370128.1| integrase family protein [Desulfovibrio sp. FW1012B]
 gi|283571776|gb|EFC19774.1| integrase family protein [Desulfovibrio sp. FW1012B]
          Length = 319

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 101/299 (33%), Positives = 155/299 (51%), Gaps = 7/299 (2%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L +E+G S  TL +Y  D  QF   LA      +T+     ++    R F+++   
Sbjct: 21  YLDHLRVEKGYSPATLAAYAEDLAQFEESLAG---RGLTLAAPGAVTLEAARGFLAELHR 77

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +++   S+ R LS ++    +L+++K  T   +  ++N K     P+ALN  +A+ LV  
Sbjct: 78  RRVAKSSMGRKLSALRGLFTFLRRKKRVTGDPLAGLKNPKTDKRQPKALNVDEAVALVTP 137

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                + +      R+ A+  LLYG GLR+SEA++L   ++   Q  +R+ GKG K R+ 
Sbjct: 138 GPESPAADGSREACRDLALAELLYGSGLRVSEAMTLDVDDLDLSQGIVRVMGKGGKERLA 197

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           PL  + R  + EY            +   F G RG  L+     R I  L R  GL    
Sbjct: 198 PLSDAARVRLGEYARRRAEFAPAPREPAFFLGARGGRLDRRQAARIIDALARGAGLARHA 257

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
             H LRHSFATHLL +G D+RS+Q +LGH RLSTTQ YT+++       +M++YDQ HP
Sbjct: 258 HPHMLRHSFATHLLESGADMRSVQELLGHARLSTTQRYTHLDLAR----LMQVYDQAHP 312


>gi|332704250|ref|ZP_08424338.1| Tyrosine recombinase xerC [Desulfovibrio africanus str. Walvis Bay]
 gi|332554399|gb|EGJ51443.1| Tyrosine recombinase xerC [Desulfovibrio africanus str. Walvis Bay]
          Length = 313

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 114/320 (35%), Positives = 169/320 (52%), Gaps = 18/320 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           I  FEL      +L +L++E+G S  T+Q+Y  D  QF  FL   +    ++     +  
Sbjct: 8   IPEFELPDSCLAFLVHLDVEKGYSPATVQAYGRDVEQFERFL---SRRDRSLAEPEGVDR 64

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++R+F+++     +   S+ R LS +++  +YL+K  + T + +  + N K+    P++
Sbjct: 65  DDVRSFLAELHRMGVRKSSMSRKLSSLRTLFRYLRKSGLATGNPMAGVGNPKQDKRHPKS 124

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           LN  QAL +++      S   + +  R+ A+  LLYG GLRISEAL L   +I      L
Sbjct: 125 LNVDQALAVMEA---QVSAGPEGL--RDLALAELLYGSGLRISEALDLNVDDIDPGSGIL 179

Query: 189 RIQGKGDKIRIVPLL-PSVR--KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
           R+ GKG K RIVPL   SVR  K+ L      P +     +  LF G RG  LN     R
Sbjct: 180 RVMGKGRKERIVPLSDASVRRLKSYLVQRHAFPVEPQ---ERALFLGSRGGRLNRRQAAR 236

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +  +    GLP S + HTLRHSFA+HLL +G  LRS+Q +LGH RL+TTQ YT++N   
Sbjct: 237 IVEHMAGLAGLPQSISPHTLRHSFASHLLQSGAGLRSVQELLGHKRLTTTQRYTHLNLAQ 296

Query: 306 GGDWMMEIYDQTHPSITQKD 325
               +   YD  HP   +KD
Sbjct: 297 ----ITRAYDAAHPRSKKKD 312


>gi|213019194|ref|ZP_03335001.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|212995303|gb|EEB55944.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 278

 Score =  166 bits (421), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 101/285 (35%), Positives = 161/285 (56%), Gaps = 10/285 (3%)

Query: 42  DTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY 101
           D +  + FL  +  E++ + ++ +LS  E+R++ + R  + +  RS  R+LS I++F KY
Sbjct: 3   DLKDLISFLNTHIGEEVNVGSLEKLSIPELRSWFTSRYARGVNARSNTRALSVIRNFFKY 62

Query: 102 LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
           +K         + ++    +  +LP+AL+     TL+  + L    E  W+  R  AI+ 
Sbjct: 63  IKNNYEINNEAVFSLSRPIQRRTLPKALSISNIETLLKEMKLPDLGEP-WVVKREIAIVV 121

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           LLYG GLRI+EAL+L   +I ++  +L + GKGDK R V +LP V+K I +Y   CP   
Sbjct: 122 LLYGTGLRITEALNLKVSDISNE--SLIVTGKGDKQRQVFILPVVKKCIQKYIKACP--- 176

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
           + +    LF G+RGK L        ++++RR+L LP   + H  RHSFATHLL    D+R
Sbjct: 177 HFDEAGHLFVGVRGKKLGRTYVANRLQKIRRFLNLPEILSPHAFRHSFATHLLQEDIDIR 236

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
           SIQ +LGH  L TTQ+YT++N ++    +  +Y     S+ +K K
Sbjct: 237 SIQQLLGHSSLETTQVYTHLNYQD----VFNMYKNFQKSLNKKSK 277


>gi|239787464|emb|CAX83935.1| Tyrosine recombinase XerC subunit [uncultured bacterium]
          Length = 321

 Score =  166 bits (420), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 104/303 (34%), Positives = 164/303 (54%), Gaps = 10/303 (3%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           ++L +ER LS  T+ +Y  D   F  +        +T + +RQ+   ++RAF+   + + 
Sbjct: 13  RHLAVERRLSPNTVSAYLRDLELFGRYWCQRHGGGLTEEQLRQMRPEDLRAFMGMGQREG 72

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
               +L+R ++ ++++ +YL++  +   +    + + K++  LPRA  E+    L++++ 
Sbjct: 73  AAKSTLQRRMASVRAWFRYLEREGLAENNPAALVASPKQAQRLPRAPTEEDTARLIESLP 132

Query: 143 LHTSHE--TKWIDAR---NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                   T W   R   + AIL LLYG GLRI E   L   ++   Q+ +R+ GKG K 
Sbjct: 133 PPGPQSPLTGWARVRLLRDGAILELLYGSGLRIGELCGLDRLDLNLRQAEVRVLGKGGKE 192

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL     +A+  Y +    +      L P+F G +G  LNP   QR + +LRR LGL
Sbjct: 193 RLVPLGSMAIQALERYLEARKAEAPPPDHLGPVFTGRQGGRLNPREVQRLVVKLRRRLGL 252

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           P   T H LRH+FATHLL  G DLRSIQ +LGH  L+TTQ YT+++  N    + +IYD 
Sbjct: 253 PEKVTPHALRHAFATHLLQAGADLRSIQEMLGHASLTTTQRYTHLDLAN----LTKIYDA 308

Query: 317 THP 319
            HP
Sbjct: 309 AHP 311


>gi|94986556|ref|YP_594489.1| site-specific recombinase XerC [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94730805|emb|CAJ54167.1| Site-specific recombinase XerC [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 313

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 110/305 (36%), Positives = 165/305 (54%), Gaps = 12/305 (3%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L + +G S  T  +Y  D  QF ++L       +T++    ++   I+ F +  
Sbjct: 8   ETFLSWLNLHKGFSLATQDAYRRDISQFEVYLRTI---GLTLEHPEHINKKHIQQFSASL 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +K+   S+ R L+ ++S  +YL K     ++  + + N K+    P  LN  Q   L+
Sbjct: 65  YYKKLTRTSIARKLAALRSLFRYLLKTHHIKDNPAVGVHNPKQHVKYPEILNVDQVFLLL 124

Query: 139 D--NVLLHTSHE--TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
              N +L TSH      I  RN+A+L LLYG GLRISEAL L   +I  +   +R+ GKG
Sbjct: 125 KGANNILKTSHTGLELAIAHRNNALLELLYGSGLRISEALCLNVSDIRTEDGFVRVIGKG 184

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +K R+ PL  +   A+ E+  +      L  Q  LF G+RGK L+     R + +L    
Sbjct: 185 NKERLAPLSDTSIVALEEWLAIRHMVATLGEQ-ALFVGVRGKRLHRRQTIRILEELCLQA 243

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           GLPL+T  HTLRHSFATHLL  G +LR++Q +LGH RLSTTQ YT++      D +++ Y
Sbjct: 244 GLPLTTAPHTLRHSFATHLLEGGANLRAVQELLGHARLSTTQRYTHITL----DKLIQAY 299

Query: 315 DQTHP 319
           D+ HP
Sbjct: 300 DKAHP 304


>gi|303326955|ref|ZP_07357397.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3]
 gi|302862943|gb|EFL85875.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3]
          Length = 331

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/321 (33%), Positives = 169/321 (52%), Gaps = 16/321 (4%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P++   ++    + +L  L +++G S  T ++Y  D  Q  +FL    E+   +    ++
Sbjct: 24  PDMAGLQI----EAFLSWLAVQKGASDATQKAYGADLTQLAVFL---REQGADLARPGEV 76

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           S   I+AF++    +     S+ R L+ ++SF ++L +    +E+    +RN ++    P
Sbjct: 77  SRKHIQAFLAWLFRRGEAKSSMARKLAAVRSFFRFLLRSGRVSENVAAQVRNPRQEKHHP 136

Query: 127 RALNEKQALTLVDN---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           RALN  +   L+D         +H  + +  R+ A+  LLYG GLRISEALSL   +   
Sbjct: 137 RALNVDETFALLDTPKAAPPSEAHAARLL-CRDLALAELLYGSGLRISEALSLDLDDAQL 195

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
               LR+ GKG + R+ PL  +  +A+  +     + L L  +  LF G RG  LN    
Sbjct: 196 RSRVLRVMGKGSRERLSPLSDTSCEALAAWLAERSY-LALPEEQALFVGARGARLNRREA 254

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            R I  L R  GL  + + H+LRHSFATHLL+ G DLRS+Q +LGH RL+TTQ YT V+ 
Sbjct: 255 ARIIAGLCRRAGLAFTVSPHSLRHSFATHLLAAGADLRSVQELLGHRRLTTTQRYTQVSL 314

Query: 304 KNGGDWMMEIYDQTHPSITQK 324
           ++    ++  YDQ HP   +K
Sbjct: 315 EH----LIRAYDQAHPRSGKK 331


>gi|330993163|ref|ZP_08317100.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
 gi|329759714|gb|EGG76221.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
          Length = 349

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 119/324 (36%), Positives = 164/324 (50%), Gaps = 28/324 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI-- 75
           R  +L  +E ER  S LTL +Y  D  +FL FL  +      +  +  LS  ++RA++  
Sbjct: 27  RDAFLHWMETERRASPLTLAAYRGDLDRFLAFLVGHLGAGPDLAALAGLSLADLRAWLAH 86

Query: 76  ------SKRR--TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
                 S RR  TQ    R+  R +S ++SF +YL +           +   +    LPR
Sbjct: 87  EHAAALSGRRATTQDRAARTRARRVSALRSFYRYLARYHGVDNPAPGLLATPRTRRPLPR 146

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS- 186
            L   QAL + + V    +H T     R+ A+  LLYGCGLRISEAL L  +++   Q+ 
Sbjct: 147 PLPTAQALDVPEGVA-DIAH-TPLARVRDGALFMLLYGCGLRISEALGLDVRDLDRAQAL 204

Query: 187 --------TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
                    LRIQGKG + R+VP+LP V  A+  +  + P         PLF G+RG  L
Sbjct: 205 GEGTKGDGVLRIQGKGGRERMVPVLPQVMAALRRWRGVHPLP---QADAPLFVGVRGGRL 261

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             G+ QR +R  R   GLP   T H LRHSFATHL+  G DLR IQ +LGH  LSTTQ Y
Sbjct: 262 QAGIAQRAMRTWRHMAGLPEHATPHALRHSFATHLMEGGADLRVIQDLLGHASLSTTQRY 321

Query: 299 TNVNSKNGGDWMMEIYDQTHPSIT 322
           T  +       +M+++ + HP  T
Sbjct: 322 TLADEAR----LMDVWTRAHPHAT 341


>gi|220904240|ref|YP_002479552.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868539|gb|ACL48874.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 373

 Score =  162 bits (411), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 163/309 (52%), Gaps = 16/309 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + +++G S+ T ++Y  D  Q   FL     ++I +   + ++   ++AF++  
Sbjct: 68  EAFLAWMTVQKGASEATRKAYAVDLAQLAEFL---RGQEIDLGQPQTVTRRHMQAFLAWL 124

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S+ R L+  +SF ++  +     E+    +RN ++    PRALN  +   L+
Sbjct: 125 FRKGEAKSSMARKLAAARSFFRFQMRGGKVAENVAAQVRNPRQEKRHPRALNVDETFALL 184

Query: 139 DNVL--------LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           D+          +  S E + I  R+ A+  LLYG GLRISEALSL   ++      LR+
Sbjct: 185 DSATGPGGKRGPVAGSAEEERILCRDLALAELLYGSGLRISEALSLDVDDVQLSSRVLRV 244

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG + R+ PL  +    +  + +  P  L L  +  LF G RG  LN     R + +L
Sbjct: 245 MGKGSRERLAPLSDTSFSCLKAWLEERPL-LALPDEAALFVGARGARLNRREAARIVERL 303

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            R  GL  + + H+LRHSFATHLL  G D+RS+Q +LGH RL+TTQ YT V+ ++    +
Sbjct: 304 CRRAGLTFTVSPHSLRHSFATHLLEAGADMRSVQELLGHQRLTTTQRYTQVSLES----L 359

Query: 311 MEIYDQTHP 319
           M+ YDQ HP
Sbjct: 360 MQTYDQAHP 368


>gi|295399802|ref|ZP_06809783.1| tyrosine recombinase XerC [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312111686|ref|YP_003990002.1| tyrosine recombinase XerC [Geobacillus sp. Y4.1MC1]
 gi|294978205|gb|EFG53802.1| tyrosine recombinase XerC [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216787|gb|ADP75391.1| tyrosine recombinase XerC [Geobacillus sp. Y4.1MC1]
          Length = 300

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 100/304 (32%), Positives = 159/304 (52%), Gaps = 17/304 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +++ L+IE+  S+ T+  Y+ D  QF  F+      +  I  + +++Y+++R +++K 
Sbjct: 9   QLFIEYLQIEKNYSQYTIVCYQRDIEQFFEFM-----NEQGIHDLAEVTYSDVRLYLTKL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             QK   RS+ R +S ++SF K+L + K   E+        KK   +P  L E++     
Sbjct: 64  YEQKQSSRSVSRKISSLRSFYKFLLREKKVLENPFALAALPKKEQKIPNFLYEQEL---- 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             +L H +     I  RN A+L LLY  G+R+SE   +   +I    ST+ I GKG K R
Sbjct: 120 -EILFHVNDVNTAIGQRNQAMLELLYATGVRVSECCHIQLSDIDFSSSTILIHGKGSKQR 178

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            VP     ++A+  Y      +L  N +     LF   RG PL P   +  + ++ +   
Sbjct: 179 YVPFGRFAKEALERYIHHGRRELLQNAKAAHAYLFVNARGNPLTPRGARYILDEMVKKAA 238

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L    + H LRH+FATHLL+ G D+R++Q +LGH  LS+TQ+YT+V      D +  IY 
Sbjct: 239 LTQHVSPHVLRHTFATHLLNEGADMRAVQELLGHAHLSSTQVYTHVTK----DRLRHIYL 294

Query: 316 QTHP 319
           QTHP
Sbjct: 295 QTHP 298


>gi|212703032|ref|ZP_03311160.1| hypothetical protein DESPIG_01070 [Desulfovibrio piger ATCC 29098]
 gi|212673620|gb|EEB34103.1| hypothetical protein DESPIG_01070 [Desulfovibrio piger ATCC 29098]
          Length = 327

 Score =  159 bits (402), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 115/338 (34%), Positives = 181/338 (53%), Gaps = 29/338 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           +E + + E +      E +++L  L+++RGLS  T  +Y  D RQ  +FLA   +   ++
Sbjct: 5   IEKDTMEEELDPRTTLEIESFLAWLDVQRGLSPTTQIAYGTDLRQLALFLA---QRGASL 61

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNL 119
               ++S   I+A++++         ++ R L+  ++F +Y ++R   TE+N+   +RN 
Sbjct: 62  ARPAEVSKKHIQAWLARLYALGEAKSTMARKLAAARTFFRY-QQRMGRTENNVAAQVRNP 120

Query: 120 KKSNSLPRALNEKQALTLVD--NVLLHTSHE------TKWIDARNSAILYLLYGCGLRIS 171
           K+    PR LN  QA  ++D  + L  T            + AR+ A+  LLYG GLRIS
Sbjct: 121 KQEQRHPRVLNVDQAFAVLDTPDALAGTGSPRIPPATGDALAARDHALAELLYGSGLRIS 180

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQL 227
           EAL L   ++  D+S +R+ GKG + R+ PL    + ++R  + +   L P       + 
Sbjct: 181 EALGLDVTDLRLDESVVRVFGKGARERMSPLSDTSVTALRAWLEQRGTLAP-----EGEK 235

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
            LF G RG  L+     R I +L R  G+ P+S   H LRHSFATHLL  G DLRS+Q +
Sbjct: 236 ALFVGARGGRLDRREAMRRIERLCRNAGVEPVSP--HALRHSFATHLLDAGADLRSVQEL 293

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LGH RL+TTQ YT V+ +     +M +YD+ HP   +K
Sbjct: 294 LGHQRLTTTQRYTRVSLER----LMHLYDEAHPRAQKK 327


>gi|167752437|ref|ZP_02424564.1| hypothetical protein ALIPUT_00681 [Alistipes putredinis DSM 17216]
 gi|167660678|gb|EDS04808.1| hypothetical protein ALIPUT_00681 [Alistipes putredinis DSM 17216]
          Length = 309

 Score =  159 bits (401), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 163/306 (53%), Gaps = 17/306 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFL----AFYTEEKITIQTIRQLSYTEIRAF 74
           Q +LQ L   R  S LT+Q+Y  D   FL +L    A +   +IT++ +R+         
Sbjct: 3   QEFLQYLATVRRFSPLTVQNYRRDVTNFLEWLDVPEADFDPRRITVEDVREW-------I 55

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + +  T+ +G  S+ R LS ++SF +YL +     +  +  +  LK S  +P  +   + 
Sbjct: 56  VHRTETKHLGAASMNRELSSLRSFFRYLHRTGRIDKEVMYRIHALKTSRRIPAFVPSTRM 115

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             ++D  L   S   ++   RNS I+ L Y CGLR++E + +   +   D + L+++GKG
Sbjct: 116 EGILDE-LDRESESPEFKFVRNSLIVLLFYSCGLRLAELVGIDRDDFSGDYTALKVRGKG 174

Query: 195 DKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           DK RIVP+LP VR+ IL Y D +    + ++ +  LF   +GK ++     R ++   R 
Sbjct: 175 DKERIVPILPPVREKILHYLDEIDRQGICISKEKALFLNQQGKRISRSTVYRTVQSQLRQ 234

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    + H LRH+FAT LL+NG D+R+IQ +LGH  L  TQ+YT+    N    + +I
Sbjct: 235 GGVQGKKSPHVLRHTFATELLNNGADMRAIQELLGHASLQATQVYTH----NSIAKLQKI 290

Query: 314 YDQTHP 319
           Y + HP
Sbjct: 291 YSKAHP 296


>gi|256828291|ref|YP_003157019.1| integrase family protein [Desulfomicrobium baculatum DSM 4028]
 gi|256577467|gb|ACU88603.1| integrase family protein [Desulfomicrobium baculatum DSM 4028]
          Length = 312

 Score =  158 bits (400), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 98/306 (32%), Positives = 165/306 (53%), Gaps = 12/306 (3%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L+ +RG S  T+ +Y  D     +FL   ++         +++  +I A+++    
Sbjct: 15  FLLYLDAQRGYSPATVAAYGTDLEGAHLFLGRRSK---GFDAPGEVTKADITAYLADLHR 71

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   S+ R LS +++F ++L++RK+  E     + N K     P+ LN  QA+ LV+ 
Sbjct: 72  RGLAKSSVCRKLSALRAFYRFLRQRKMVVEDPCAALANPKLPKVHPKVLNVDQAIHLVET 131

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +   + + + +  R+ A+L +LYG GLR+SEAL L   ++  DQ  +R+ GKG K R+V
Sbjct: 132 EI---TLDPEGL--RDLALLEVLYGSGLRVSEALGLDFAHVDLDQKLVRVLGKGRKERLV 186

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           PL     + +  Y +          +  +F G RG  L+     R ++++    G P S 
Sbjct: 187 PLTGPAAERLARYIEQRGAFAPAAREQAVFLGKRGGRLSRKQADRIVKEMAVRSGAPCSI 246

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + HTLRHSFA+H+L  G DLRS+Q +LGH R+STTQ YT+++       +M +YD  HP 
Sbjct: 247 SPHTLRHSFASHMLQAGADLRSVQELLGHSRISTTQRYTHLDLAQ----VMRVYDAAHPL 302

Query: 321 ITQKDK 326
             +KD+
Sbjct: 303 AAKKDE 308


>gi|158522508|ref|YP_001530378.1| integrase family protein [Desulfococcus oleovorans Hxd3]
 gi|158511334|gb|ABW68301.1| integrase family protein [Desulfococcus oleovorans Hxd3]
          Length = 308

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 159/304 (52%), Gaps = 19/304 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY--TEEKITIQTIRQLSYTEIRAFISKR 78
           ++++L  E+G S  T ++Y  D ++FL FL+    TE  + +  I   S   IR +++  
Sbjct: 17  FVESLASEKGYSPNTCRAYSADLKEFLAFLSPPDDTEHPVCLDDI---SVIAIRGYLAFL 73

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +K+   ++ R LS ++SF +YL+KR I T +    + + K    +P  L+       V
Sbjct: 74  HKKKMDKSTVSRKLSVLRSFFRYLEKRGIMTGNPARAVLSPKIGRKIPAFLS-------V 126

Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           D++  LL  S     +D RN AI   +Y  G+R+SEA  L   ++  D+   R+ GKG K
Sbjct: 127 DDMFRLLDASTGDTLLDLRNRAIFETIYSTGIRVSEAAGLDAAHVETDERVFRVYGKGAK 186

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R+VP+      +I  Y      +  + ++  PLF       L      R ++Q     G
Sbjct: 187 ERVVPVGKKALASIAAYRTRLFEETGIGVEEGPLFLNKNRGRLTTRSMDRILKQTALRCG 246

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L +S + H LRHSFATH+L  G DLR++Q ILGH  LSTTQ YT+V+     D +ME+YD
Sbjct: 247 LTVSLSPHALRHSFATHMLDAGADLRTVQEILGHKSLSTTQKYTHVSM----DKLMEVYD 302

Query: 316 QTHP 319
             HP
Sbjct: 303 HAHP 306


>gi|146297890|ref|YP_001192481.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146152308|gb|ABQ03162.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 298

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 116/311 (37%), Positives = 169/311 (54%), Gaps = 27/311 (8%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE----KITIQTIRQLSYTE 70
           +K+ Q++L+   IERGLSK T+++Y  D  +  +FL     E    KIT +TI+Q  Y  
Sbjct: 7   IKDYQSYLR---IERGLSKNTIENYSFDIERLCLFLETNQIEVSPLKITDETIQQFIYA- 62

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
               ISK    ++  RS  R +SG+KSF  YL       +S +  + + K    LP  L 
Sbjct: 63  ----ISK----EVNPRSQARIISGLKSFFSYLVFEDYRNDSPLELIESPKTGRKLPDTLA 114

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            K+   L+D + L +S+E +    RN AIL  LYGCGLR+SE +SL   ++  D+  ++I
Sbjct: 115 VKEIDALIDAIDL-SSNEGE----RNRAILESLYGCGLRVSELVSLKISDLYFDEGFIKI 169

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIR 248
            GKG+K R VP+    +K I  Y +     LN+    +  LF   RG  L   +    I+
Sbjct: 170 TGKGNKERFVPIGKLTQKYIQIYQNEVRVHLNIKKGCEDTLFLNRRGNQLTRAMIFTIIK 229

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            L   + L  S + HTLRHSFATHLL NG DLRSIQ +LGH  ++TT+IY +++      
Sbjct: 230 DLAVKINLNKSISPHTLRHSFATHLLENGADLRSIQLMLGHESITTTEIYVHLDRS---- 285

Query: 309 WMMEIYDQTHP 319
           ++ E+    HP
Sbjct: 286 FLKEVMHSYHP 296


>gi|171910181|ref|ZP_02925651.1| hypothetical protein VspiD_03395 [Verrucomicrobium spinosum DSM
           4136]
          Length = 318

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/304 (33%), Positives = 163/304 (53%), Gaps = 22/304 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  +E+ER  S  TL++Y          ++ + + +    T   L+  + R ++ ++ 
Sbjct: 31  DFLTFMEVERSASPKTLENYRHA-------MSTFRKSQPACMTWESLTPDDFRLYLYEQM 83

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
             ++G  +++   + ++SF K+L +R+   ++ +L ++  K    LP  L   Q  TL+ 
Sbjct: 84  KAELGRATIRLHFAALRSFFKFLTRRRGLVKNPLLEVQLPKPEKKLPVVLTLSQVETLL- 142

Query: 140 NVLLHTSHETK---WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           N+ L+T  E +   W   R++AIL L Y  G+RISE  SL  +++     TLR+ GKG K
Sbjct: 143 NLPLNTPREKQAPAWAPERDAAILELFYSTGVRISELASLNVEDVDVYSETLRVIGKGRK 202

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            RI P+     +A+  Y         L +   PLFR   GK +        + +  +  G
Sbjct: 203 ERICPVGGPAIRAMQRYQS------RLGVYSGPLFRSKVGKRMTNQAINNVVEKYWKLSG 256

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           LP+  T H LRHSFATHLL+NG DLRS+Q++LGH  LSTTQIYT+V ++     M E+Y+
Sbjct: 257 LPVQVTPHKLRHSFATHLLNNGADLRSVQTLLGHASLSTTQIYTHVTTER----MKEVYE 312

Query: 316 QTHP 319
             HP
Sbjct: 313 DAHP 316


>gi|302879884|ref|YP_003848448.1| tyrosine recombinase XerC [Gallionella capsiferriformans ES-2]
 gi|302582673|gb|ADL56684.1| tyrosine recombinase XerC [Gallionella capsiferriformans ES-2]
          Length = 317

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 106/309 (34%), Positives = 162/309 (52%), Gaps = 23/309 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L  L  ER  SKLT +SY  D             E  T   + +L  + IR +I++ 
Sbjct: 28  QGYLAWLLGERRYSKLTAESYARDLAHLF--------ELSTGLALNELKVSHIRRYIAQL 79

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            +  +G RSL R LS  + F  YL +    T++  + +R  K + +LP+ L+  QA+ +V
Sbjct: 80  HSSGLGGRSLARLLSAWRGFYNYLLRDHGFTDNPCVGLRAPKSARALPQVLSPDQAVRMV 139

Query: 139 DNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGD 195
           D         T   D+ R+ A+  L Y  GLR+ E + L  ++I  D     +R+ GKG 
Sbjct: 140 DL-------PTDAPDSIRDKAMFELFYSSGLRLMELIDLDAESIRSDITAGEVRVTGKGH 192

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RIVPL      A+ E+  + P   N+  +  LF G RG  ++P V Q  ++Q     G
Sbjct: 193 KTRIVPLGGCAISALHEWLAVRPTLANIG-ERALFVGARGARISPRVVQLRMKQWGIKQG 251

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  S   H LRHSFATH+L + GDLR++Q +LGH  +STTQ+YT+++ +    ++ +IYD
Sbjct: 252 ITSSVHPHMLRHSFATHVLQSSGDLRAVQEMLGHASISTTQVYTHLDFQ----YLSKIYD 307

Query: 316 QTHPSITQK 324
             HP   +K
Sbjct: 308 AAHPRAKRK 316


>gi|227893483|ref|ZP_04011288.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047]
 gi|227864708|gb|EEJ72129.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047]
          Length = 303

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 102/316 (32%), Positives = 174/316 (55%), Gaps = 18/316 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +V+ +L  +  ++L+  ++ERGLS  T+ +Y  D  ++L F+     EK  + +      
Sbjct: 3   MVNSKLQDQIDDYLRYSQVERGLSSNTISAYRQDLEEYLSFI-----EKEGMPSW-PTEA 56

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           +++ AF++++R       S+ R +S ++ F ++L ++ I   + +L +   KK   LP A
Sbjct: 57  SDVDAFLARQRDLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTA 116

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L +++      N LL      + +  R+ AIL  LY  G+R+SE ++L  Q++ DD   +
Sbjct: 117 LTQEEV-----NKLLEQPDVKRKLGLRDRAILETLYATGMRVSELINLELQDLHDDLGLV 171

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI---QLPLFRGIRGKPLNPGVFQR 245
           R+ GKG K R++P+ P     I +Y       L L++      +F   RGK L      +
Sbjct: 172 RVIGKGSKERLIPISPVALNWIKKYEKEVRDPLILHVGQNDEHIFLNSRGKMLTRQAIWQ 231

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            I++  +  G+    T HTLRH+FATHLL NG DLR +Q ILGH  +STTQIYTN++ K+
Sbjct: 232 MIKKYCQMAGIVKDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKH 291

Query: 306 GGDWMMEIYDQTHPSI 321
               ++++Y +THP +
Sbjct: 292 ----ILQVYQKTHPRL 303


>gi|212639574|ref|YP_002316094.1| site-specific tyrosine recombinase XerC [Anoxybacillus flavithermus
           WK1]
 gi|254799325|sp|B7GGC7|XERC_ANOFW RecName: Full=Tyrosine recombinase xerC
 gi|212561054|gb|ACJ34109.1| Site-specific recombinase XerD [Anoxybacillus flavithermus WK1]
          Length = 300

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 98/304 (32%), Positives = 162/304 (53%), Gaps = 21/304 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +++ L+IE+  S+ T+  Y+ D  +F  F+     E+  I+ ++Q+SY+++R F+++   
Sbjct: 11  FIEYLQIEKNYSEYTIACYKHDIGEFFEFM-----EREQIKQLQQVSYSDVRLFLTELHQ 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL--NEKQALTLV 138
           +K   RS+ R +S ++SF K+L + KI +E+        KK   +P  L  +E + L +V
Sbjct: 66  RKQSSRSIARKMSSLRSFYKFLLREKIVSENPFALASLPKKEQKIPHFLYPDELEQLFVV 125

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +++          I  RN A++ LLY  G+R+SE  ++   +I     T+ I GKG+K R
Sbjct: 126 NDL-------NTAIGQRNQAMIELLYATGIRVSECCNIRLSHIDFSVCTILISGKGNKQR 178

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            VP     ++A+  Y       L    + P   LF   RG  L P   +  +  +     
Sbjct: 179 YVPFGTYAKEALERYIQDGRQQLASKAKTPTDVLFLNARGGALTPRGVRHILNDIVERAA 238

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L L  + HT RH+FATHLL+ G DLRS+Q +LGH  LS+TQ+YT+V      D +  +Y 
Sbjct: 239 LSLKVSPHTFRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTK----DHLRYVYL 294

Query: 316 QTHP 319
            +HP
Sbjct: 295 HSHP 298


>gi|229815095|ref|ZP_04445432.1| hypothetical protein COLINT_02137 [Collinsella intestinalis DSM
           13280]
 gi|229809325|gb|EEP45090.1| hypothetical protein COLINT_02137 [Collinsella intestinalis DSM
           13280]
          Length = 333

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 162/312 (51%), Gaps = 20/312 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL + R  +L +L +ER L+  T+ +YE D R +L FL      +     IR+    ++ 
Sbjct: 35  ELERCRGEYLNHLTVERNLAANTIAAYERDLRAYLAFLGERGTRRPD-DVIRR----DVE 89

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F++ +R     D S+ R+LS +K F +++ +  +++ +    +R  K  + LP  ++ +
Sbjct: 90  DFVAAKRADHAADASVNRALSAVKGFHRFMVREGLSSVNPTATLRVPKMGDHLPDVISIE 149

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
            A  L+D     T+        R+ A+L +LYGCGLR SE   L    +  D+  +R+ G
Sbjct: 150 AAERLLDQDFPATA-----AGMRDRAVLEVLYGCGLRASELCGLDVNEVYLDEGFVRVMG 204

Query: 193 KGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           KG K R+VPL+ + R+ +  Y      +L     + +    +F  +RG  L+        
Sbjct: 205 KGSKERLVPLVGTARRVLGTYLAEARSELFSHTRSASASAAVFLNMRGTRLSRQSVHAIC 264

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +  R +G+      HTLRHSFATH+L+ G DLR++Q ILGH  ++TTQIYT+++     
Sbjct: 265 ERYGRMVGID-GLHPHTLRHSFATHMLAGGADLRALQEILGHADIATTQIYTHIDRTQ-- 321

Query: 308 DWMMEIYDQTHP 319
             + E+Y   HP
Sbjct: 322 --LREVYLAAHP 331


>gi|194016964|ref|ZP_03055577.1| tyrosine recombinase XerD [Bacillus pumilus ATCC 7061]
 gi|194011570|gb|EDW21139.1| tyrosine recombinase XerD [Bacillus pumilus ATCC 7061]
          Length = 296

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 105/308 (34%), Positives = 163/308 (52%), Gaps = 28/308 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +++  + +ERGLS+ T+ SY+ D + +L FL   T E++T   I+ ++   I  ++ K +
Sbjct: 7   DFIHFMTVERGLSENTIVSYKRDLQNYLSFLM--THEQLT--DIKDVTRLHIIHYLKKLK 62

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +    ++  R LS I+SF ++L + K+TT+    N+   K    LP+ L+  +   L+D
Sbjct: 63  EEGKSSKTSVRHLSSIRSFHQFLLREKVTTDDPSWNIETQKTERKLPKVLSLGEVEKLLD 122

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
               HT       D R+ A+L LLY  G+R+SE L LT  ++      +R  GKG K RI
Sbjct: 123 TPNQHTP-----FDYRDKAMLELLYATGIRVSEMLDLTLADVHLTMGFIRCFGKGRKERI 177

Query: 200 VPLLPSVRKAILEYYDLC--------PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           VP+  +   AI EY +          P D        LF    GK ++   F + +++  
Sbjct: 178 VPIGEAAASAIEEYLEKGRSKLLKKQPAD-------ALFLNHHGKKMSRQGFWKNLKKRA 230

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        + 
Sbjct: 231 LEAGIQKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----LK 286

Query: 312 EIYDQTHP 319
           ++Y + HP
Sbjct: 287 DVYHKFHP 294


>gi|221135227|ref|ZP_03561530.1| site-specific tyrosine recombinase XerD [Glaciecola sp. HTCC2999]
          Length = 303

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 101/299 (33%), Positives = 160/299 (53%), Gaps = 13/299 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L +E+GLS  TL +Y+ D RQ   FL   T++      +  ++ T+IRA++S R+ 
Sbjct: 16  FLEVLYLEKGLSDNTLSAYQTDLRQLCRFL---TQQDAAFSLV-DITDTDIRAYLSHRQA 71

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS  R+LS +K+F+KY    KI  +  + +++  K + SLP +L E Q       
Sbjct: 72  NNVSARSTARALSSLKTFIKYCLSEKIRDDDPLRHIKPPKVAVSLPDSLTEAQV-----E 126

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL        +  R+ A+L +LY  GLR++E + L    +   Q  +R+ GKG+K R+V
Sbjct: 127 SLLAAPDTALAVGQRDKAMLEVLYATGLRVTELVGLRLDQMSLLQGVVRVIGKGNKERLV 186

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           PL     +A+  +      +L  +    +F   RG  +    F   I+      G+ +  
Sbjct: 187 PLGEPAIEALTLFLQQGRHELLKHSSDVVFPSTRGTQMTRQTFWHRIKHYAMVAGIQVHL 246

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V S+     +  I +  HP
Sbjct: 247 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVASER----LTHIIESHHP 301


>gi|52080868|ref|YP_079659.1| site-specific tyrosine recombinase XerD [Bacillus licheniformis
           ATCC 14580]
 gi|52786240|ref|YP_092069.1| site-specific tyrosine recombinase XerD [Bacillus licheniformis
           ATCC 14580]
 gi|319645175|ref|ZP_07999408.1| RipX protein [Bacillus sp. BT1B_CT2]
 gi|52004079|gb|AAU24021.1| site-specific integrase/recombinase [Bacillus licheniformis ATCC
           14580]
 gi|52348742|gb|AAU41376.1| RipX [Bacillus licheniformis ATCC 14580]
 gi|317392984|gb|EFV73778.1| RipX protein [Bacillus sp. BT1B_CT2]
          Length = 296

 Score =  156 bits (394), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 99/302 (32%), Positives = 162/302 (53%), Gaps = 14/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++    +ERGLS  T+ SYE D   +    A Y EE+  + +  Q++   I  F+   
Sbjct: 6   KDFIHYAVVERGLSHNTVVSYERDLNSY----AAYLEEQEQLSSFDQVTRLHIIQFLKHL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +      +++ R L+ I+SF ++L + K+T +   +++ + K   +LP+ L+ ++  TL+
Sbjct: 62  KDAGKSGKTVARHLASIRSFHQFLLREKVTAQDPSVHIESQKTERTLPKVLSLQEVETLL 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D   L     T     R+ A+L LLY  G+R+SE ++L   ++      +R  GKG K R
Sbjct: 122 DTPKL-----TGPFGYRDKAMLELLYATGIRVSEMIALKLSDVHLSMGFIRCFGKGRKER 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           IVPL  +   A+ EY       L   N +  LF    G+ ++   F + ++++    G+ 
Sbjct: 177 IVPLGEAASHAVGEYLSKARGKLLKKNTEDALFLNHHGRQMSRQGFWKNLKKIALEAGIN 236

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        + ++Y Q 
Sbjct: 237 KELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----LKDVYRQY 292

Query: 318 HP 319
           HP
Sbjct: 293 HP 294


>gi|314939481|ref|ZP_07846715.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a04]
 gi|314941112|ref|ZP_07848010.1| tyrosine recombinase XerD [Enterococcus faecium TX0133C]
 gi|314948724|ref|ZP_07852096.1| tyrosine recombinase XerD [Enterococcus faecium TX0082]
 gi|314951697|ref|ZP_07854740.1| tyrosine recombinase XerD [Enterococcus faecium TX0133A]
 gi|314993956|ref|ZP_07859283.1| tyrosine recombinase XerD [Enterococcus faecium TX0133B]
 gi|314997520|ref|ZP_07862465.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a01]
 gi|313588431|gb|EFR67276.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a01]
 gi|313591558|gb|EFR70403.1| tyrosine recombinase XerD [Enterococcus faecium TX0133B]
 gi|313596161|gb|EFR75006.1| tyrosine recombinase XerD [Enterococcus faecium TX0133A]
 gi|313600113|gb|EFR78956.1| tyrosine recombinase XerD [Enterococcus faecium TX0133C]
 gi|313641283|gb|EFS05863.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a04]
 gi|313644790|gb|EFS09370.1| tyrosine recombinase XerD [Enterococcus faecium TX0082]
          Length = 300

 Score =  155 bits (393), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 167/308 (54%), Gaps = 16/308 (5%)

Query: 14  LLKERQN-WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ++KE+ N +L  L IERGLS  T QSYE D  Q+L FL    E+KI   + + +    + 
Sbjct: 5   IMKEQINDYLHYLNIERGLSANTRQSYERDLEQYLHFLQ---EQKIA--SWQDVDRFLVI 59

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F+ K   +K    ++ R +S ++ F ++L++ +IT    + ++   KK+  LP  L   
Sbjct: 60  RFLEKLHEEKKATATVTRMISSLRRFHQFLRQERITDHDPMQHIDTPKKAQKLPSTLT-- 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
             LT V+  L+     TK +  R+ AIL ++Y  G+R+SE + L   ++      ++  G
Sbjct: 118 --LTEVEK-LIEAPDTTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVG 174

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KGDK RI+PL     + +  Y D   P  +    ++ +F    GK L+     + ++QL 
Sbjct: 175 KGDKERIIPLGDYAIQWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLV 234

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R  G+    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT++  K     M 
Sbjct: 235 REAGIYKEVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR----MT 290

Query: 312 EIYDQTHP 319
           ++Y Q  P
Sbjct: 291 DVYKQHFP 298


>gi|119503715|ref|ZP_01625797.1| site-specific tyrosine recombinase XerC [marine gamma
           proteobacterium HTCC2080]
 gi|119460223|gb|EAW41316.1| site-specific tyrosine recombinase XerC [marine gamma
           proteobacterium HTCC2080]
          Length = 304

 Score =  155 bits (393), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 94/299 (31%), Positives = 169/299 (56%), Gaps = 16/299 (5%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R +S+ TL+ Y  D R+F+ F A   ++  T  ++R+   +++R ++S+   Q +   S+
Sbjct: 20  RQVSRHTLEGYGRDIRRFVSFCAVSNKQSAT--SVRE---SDVRNWVSQLHRQGLSPTSI 74

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           +R+LS ++S  ++L +R +T  +  L ++  K+  +LP+ L+         N L     E
Sbjct: 75  QRALSSVRSLYRFLSERDVTLGNPALGVQAPKRPRNLPKTLDADSV-----NHLFQWQPE 129

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
           T  +D R+ AI  LLY  GLR+SE +S    ++  ++  + + GKG K R +P+      
Sbjct: 130 TT-LDFRDMAIAELLYSSGLRLSELVSANINDLEFNERMITVTGKGRKTRTLPVGGPALT 188

Query: 209 AILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           A+ ++  L P  + ++    PLF   RG  ++P   Q  ++++ R+  LP     H LRH
Sbjct: 189 AVTKWLSLRPLGNEDVGPASPLFVSARGTRISPRSVQLRLQRMARFSALPGKLHPHMLRH 248

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
           SFA+H+L + GDLR++Q +LGH  +STTQIYT+++ ++    + ++YD  HP   +K+K
Sbjct: 249 SFASHMLESSGDLRAVQELLGHSDISTTQIYTHLDFQH----LSKVYDAAHPRARRKNK 303


>gi|187476668|ref|YP_784691.1| site-specific tyrosine recombinase XerC [Bordetella avium 197N]
 gi|115421254|emb|CAJ47759.1| tyrosine recombinase [Bordetella avium 197N]
          Length = 325

 Score =  155 bits (392), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 101/326 (30%), Positives = 167/326 (51%), Gaps = 28/326 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++WLQ+L+ +R  S  TL +Y  D        A  T+  + +Q    LS + IR  I++ 
Sbjct: 9   EDWLQHLQTQRRYSSHTLAAYRHDLESLA---ALATQAGLALQ---DLSVSHIRQQIARL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q +G RSL R L+  + F ++         + +  +R  K   +LP+AL+  QA  ++
Sbjct: 63  HAQGLGPRSLARRLAAWRGFYQWWAPHIGLARNPVAGVRAPKAPRALPKALSVDQAQAML 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL-----------TPQNIMD-DQS 186
           D+     S  T  +  R+ AI  LLY  GLR+SE +SL            P   ++  ++
Sbjct: 123 DHAPAQLS--TDPVSLRDHAISELLYSSGLRLSELVSLDTHYHRHTGSEEPAGWLNRAEA 180

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI----QLPLFRGIRGKPLNPGV 242
            + + GKG K RIVP+  +   A+ ++    P  L+          LF G RG  ++P V
Sbjct: 181 EVVVLGKGGKRRIVPVGSAALAALDKWLQARPTLLSAATPAADSYALFLGARGARISPRV 240

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            Q  + +L +  G+P     H LRHSFA+H+L +  DLR++Q +LGH  ++TTQ+YT ++
Sbjct: 241 VQLQLARLAQQAGVPAHVHPHVLRHSFASHVLQSAQDLRAVQELLGHANIATTQVYTRLD 300

Query: 303 SKNGGDWMMEIYDQTHPSITQKDKKN 328
            ++    + ++YDQ HP   +K + N
Sbjct: 301 FQH----LAKVYDQAHPRANRKPEDN 322


>gi|262369523|ref|ZP_06062851.1| site-specific tyrosine recombinase [Acinetobacter johnsonii SH046]
 gi|262315591|gb|EEY96630.1| site-specific tyrosine recombinase [Acinetobacter johnsonii SH046]
          Length = 308

 Score =  155 bits (392), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 103/320 (32%), Positives = 177/320 (55%), Gaps = 16/320 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++FE ++    WL+  EI+   S  TLQ+YE D   FL+F     ++K+ +  +     T
Sbjct: 1   MTFEPMQLLAMWLKQREIQNQ-SAHTLQAYERDVSDFLLFC---EQKKLELGDV---EAT 53

Query: 70  EIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           ++R FI+++   Q++   SL+R LS I+ F+K+ ++ +    +   + +  +K   LP  
Sbjct: 54  DLREFIAQKVEYQQLSSSSLQRMLSSIRQFMKWAEQGQHLAFNPADDFQLKRKPRPLPGL 113

Query: 129 LNEKQALTLVDNVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           ++ +    ++D  L     E + W   R+ A+L LLY  GLR++E   L  ++I  ++  
Sbjct: 114 VDIETINQILDQALPEKEVEQQMWY--RDKALLELLYSSGLRLAEVQGLRIKDIDFNRQL 171

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           LRI GKG+K R+VP     + A++++  + P ++ +      +F   +G PL     +  
Sbjct: 172 LRITGKGNKTRVVPFGSKAKDAVMKWLSIYPLWNGDFVPDAQVFITQKGNPLGMRQIENR 231

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           ++   +  G+ +    H LRH FA+H+LSN GDLR++Q +LGH  LSTTQIYT+V+    
Sbjct: 232 VKFQAQRAGVNIDLHPHLLRHCFASHMLSNSGDLRAVQEMLGHSNLSTTQIYTHVDF--- 288

Query: 307 GDWMMEIYDQTHPSITQKDK 326
            D + ++YDQTHP   QK K
Sbjct: 289 -DRLAQVYDQTHPRAQQKVK 307


>gi|88813056|ref|ZP_01128298.1| Tyrosine recombinase XerC [Nitrococcus mobilis Nb-231]
 gi|88789689|gb|EAR20814.1| Tyrosine recombinase XerC [Nitrococcus mobilis Nb-231]
          Length = 301

 Score =  155 bits (392), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 102/311 (32%), Positives = 164/311 (52%), Gaps = 19/311 (6%)

Query: 21  WLQ----NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           WL+    +L  ER L++LT Q Y  D    L  LA Y    + +    Q++ T IR FI+
Sbjct: 4   WLERFDAHLRTERRLARLTRQHYRRD----LETLAGYCG-ALGLSGWEQVNATHIRRFIA 58

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            R    +  RSL+R LS I++  +YL +  +T  +    +R  K    LP AL+  +   
Sbjct: 59  WRHRSGLAGRSLQRMLSSIRTLYRYLIREGVTRSNPGTGVRAPKTRQRLPEALDVDETAH 118

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+D         +  +  R+ A+  LLY CGLR++E   L+   +   ++ LR+ GKG K
Sbjct: 119 LLDE-----PPASDPLRVRDVAMFELLYSCGLRLAELAGLSTDAVTGREAELRVTGKGCK 173

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +R+VP+    R A+L +  L P  L  + +  LF    G+ L+    Q  + +L +  GL
Sbjct: 174 MRVVPIGRQARCALLRWLTLRP-GLARSDEPALFVARHGRRLSHRSIQVRLERLAQRRGL 232

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRHSFA+HLL + GDLR++Q +LGH  + TTQ+YT+++ ++    + ++YD 
Sbjct: 233 HRRVHPHMLRHSFASHLLESSGDLRAVQELLGHAHIGTTQVYTHLDFQH----LTKVYDA 288

Query: 317 THPSITQKDKK 327
            HP   +K ++
Sbjct: 289 AHPRARRKPRE 299


>gi|257877980|ref|ZP_05657633.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257881234|ref|ZP_05660887.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257884899|ref|ZP_05664552.1| phage integrase [Enterococcus faecium 1,231,501]
 gi|257889821|ref|ZP_05669474.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|258616535|ref|ZP_05714305.1| integrase/recombinase XerD, putative [Enterococcus faecium DO]
 gi|260559031|ref|ZP_05831217.1| phage integrase [Enterococcus faecium C68]
 gi|261207565|ref|ZP_05922250.1| phage integrase [Enterococcus faecium TC 6]
 gi|289565077|ref|ZP_06445530.1| tyrosine recombinase XerD [Enterococcus faecium D344SRF]
 gi|293556722|ref|ZP_06675285.1| tyrosine recombinase XerD [Enterococcus faecium E1039]
 gi|293563380|ref|ZP_06677829.1| tyrosine recombinase XerD [Enterococcus faecium E1162]
 gi|293568038|ref|ZP_06679376.1| tyrosine recombinase XerD [Enterococcus faecium E1071]
 gi|294614864|ref|ZP_06694759.1| tyrosine recombinase XerD [Enterococcus faecium E1636]
 gi|294618694|ref|ZP_06698228.1| tyrosine recombinase XerD [Enterococcus faecium E1679]
 gi|294622985|ref|ZP_06701875.1| tyrosine recombinase XerD [Enterococcus faecium U0317]
 gi|257812208|gb|EEV40966.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257816892|gb|EEV44220.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257820737|gb|EEV47885.1| phage integrase [Enterococcus faecium 1,231,501]
 gi|257826181|gb|EEV52807.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|260074788|gb|EEW63104.1| phage integrase [Enterococcus faecium C68]
 gi|260077948|gb|EEW65654.1| phage integrase [Enterococcus faecium TC 6]
 gi|289163084|gb|EFD10931.1| tyrosine recombinase XerD [Enterococcus faecium D344SRF]
 gi|291589259|gb|EFF21069.1| tyrosine recombinase XerD [Enterococcus faecium E1071]
 gi|291592326|gb|EFF23940.1| tyrosine recombinase XerD [Enterococcus faecium E1636]
 gi|291595077|gb|EFF26420.1| tyrosine recombinase XerD [Enterococcus faecium E1679]
 gi|291597613|gb|EFF28774.1| tyrosine recombinase XerD [Enterococcus faecium U0317]
 gi|291601054|gb|EFF31343.1| tyrosine recombinase XerD [Enterococcus faecium E1039]
 gi|291604641|gb|EFF34126.1| tyrosine recombinase XerD [Enterococcus faecium E1162]
          Length = 295

 Score =  155 bits (391), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 108/307 (35%), Positives = 166/307 (54%), Gaps = 16/307 (5%)

Query: 15  LKERQN-WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +KE+ N +L  L IERGLS  T QSYE D  Q+L FL    E+KI   + + +    +  
Sbjct: 1   MKEQINDYLHYLNIERGLSANTRQSYERDLEQYLHFLQ---EQKIA--SWQDVDRFLVIR 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+ K   +K    ++ R +S ++ F ++L++ +IT    + ++   KK+  LP  L    
Sbjct: 56  FLEKLHEEKKATATVTRMISSLRRFHQFLRQERITDHDPMQHIDTPKKAQKLPSTLT--- 112

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
            LT V+  L+     TK +  R+ AIL ++Y  G+R+SE + L   ++      ++  GK
Sbjct: 113 -LTEVEK-LIEAPDTTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           GDK RI+PL     + +  Y D   P  +    ++ +F    GK L+     + ++QL R
Sbjct: 171 GDKERIIPLGDYAIQWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVR 230

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT++  K     M +
Sbjct: 231 EAGIYKEVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR----MTD 286

Query: 313 IYDQTHP 319
           +Y Q  P
Sbjct: 287 VYKQHFP 293


>gi|28493419|ref|NP_787580.1| integrase/recombinase [Tropheryma whipplei str. Twist]
 gi|28476460|gb|AAO44549.1| integrase/recombinase [Tropheryma whipplei str. Twist]
          Length = 316

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/307 (34%), Positives = 170/307 (55%), Gaps = 18/307 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L++E   +L+N+   RG S  T ++Y  D   F  ++  + + +  ++++R +S  ++R+
Sbjct: 25  LIREFIIYLENV---RGYSSHTCRAYYRDLMCFGEYIITH-DSRENVKSLRDVSIQDLRS 80

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++  +  +    RS++R++S +KSF ++   RKIT ++    +R  K ++ LP  L+EK+
Sbjct: 81  WLYSQSHKSA--RSIRRAVSSLKSFFRWAYDRKITAQNTAAALRAPKSTSQLPSVLSEKR 138

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++ N     SH    I  RN+AI  LLY   +R+SE +SL   +I  D  T+R+ GK
Sbjct: 139 IAQILGNF----SHTVPVIQLRNTAIFELLYASAIRVSELVSLDLDSIDHDLCTVRVDGK 194

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
             K R+V        A+  Y ++    L+      LF G RG+ +NP V  R + +L   
Sbjct: 195 NGKQRVVLFGKPASHALDLYLNMRHTLLSDRSSKALFLGSRGRRINPRVVYRLVSEL--- 251

Query: 254 LGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           L +P      H LRHS ATH+L NG DLRS+Q ILGH  LSTTQIYT+V+ +     ++ 
Sbjct: 252 LEMPKGPRGPHVLRHSAATHMLDNGADLRSLQEILGHSSLSTTQIYTHVSLER----LIS 307

Query: 313 IYDQTHP 319
            Y+Q HP
Sbjct: 308 SYNQAHP 314


>gi|28572470|ref|NP_789250.1| DNA recombinase [Tropheryma whipplei TW08/27]
 gi|28410602|emb|CAD66988.1| putative DNA recombinase [Tropheryma whipplei TW08/27]
          Length = 306

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/307 (34%), Positives = 170/307 (55%), Gaps = 18/307 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L++E   +L+N+   RG S  T ++Y  D   F  ++  + + +  ++++R +S  ++R+
Sbjct: 15  LIREFIIYLENV---RGYSSHTCRAYYRDLMCFGEYIITH-DSRENVKSLRDVSIQDLRS 70

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++  +  +    RS++R++S +KSF ++   RKIT ++    +R  K ++ LP  L+EK+
Sbjct: 71  WLYSQSHKSA--RSIRRAVSSLKSFFRWAYDRKITAQNTAAALRAPKSTSQLPSVLSEKR 128

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++ N     SH    I  RN+AI  LLY   +R+SE +SL   +I  D  T+R+ GK
Sbjct: 129 IAQILGNF----SHTVPVIQLRNTAIFELLYASAIRVSELVSLDLDSIDHDLCTVRVDGK 184

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
             K R+V        A+  Y ++    L+      LF G RG+ +NP V  R + +L   
Sbjct: 185 NGKQRVVLFGKPASHALDLYLNMRHTLLSDRSSKALFLGSRGRRINPRVVYRLVSEL--- 241

Query: 254 LGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           L +P      H LRHS ATH+L NG DLRS+Q ILGH  LSTTQIYT+V+ +     ++ 
Sbjct: 242 LEMPKGPRGPHVLRHSAATHMLDNGADLRSLQEILGHSSLSTTQIYTHVSLER----LIS 297

Query: 313 IYDQTHP 319
            Y+Q HP
Sbjct: 298 SYNQAHP 304


>gi|311030726|ref|ZP_07708816.1| site-specific tyrosine recombinase XerD [Bacillus sp. m3-13]
          Length = 296

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/302 (31%), Positives = 163/302 (53%), Gaps = 14/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  L +E+GL+  T+ SYE D + +L++L+   E    I ++  +S + I  F+   
Sbjct: 6   KDFIHFLVVEKGLASNTVVSYERDLKSYLLYLSKVEE----ISSLEAVSRSTIIQFLKFL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  +++ R ++ I+SF ++L + K+TT+   +++   K+   LP+ ++ ++   L+
Sbjct: 62  TENGKSSKTIARHIASIRSFHQFLLREKVTTQDPTVHIDRPKQEQKLPQVMSVEEVQALL 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D     +   +K    R+ A+L LLY  G+R+SE +SL   ++      +R  GKG+K R
Sbjct: 122 D-----SPDTSKVFGMRDKAMLELLYATGMRVSELISLNLSDVHLTMGFVRCIGKGNKER 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           I+PL    + AI  Y +     L        LF  + G  L    F + +++L +  G+ 
Sbjct: 177 IIPLGTMAQNAITNYIEESRSQLLKKKTTDALFVNLYGNRLTRQGFWKILKKLTKEAGIE 236

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        M ++Y   
Sbjct: 237 KELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----MKDVYSMF 292

Query: 318 HP 319
           HP
Sbjct: 293 HP 294


>gi|257898863|ref|ZP_05678516.1| phage integrase [Enterococcus faecium Com15]
 gi|293570233|ref|ZP_06681302.1| tyrosine recombinase XerD [Enterococcus faecium E980]
 gi|257836775|gb|EEV61849.1| phage integrase [Enterococcus faecium Com15]
 gi|291609640|gb|EFF38901.1| tyrosine recombinase XerD [Enterococcus faecium E980]
          Length = 295

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/307 (33%), Positives = 163/307 (53%), Gaps = 16/307 (5%)

Query: 15  LKERQN-WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +KE+ N +L  L IERGLS  T QSYE D  Q+L FL     E+  + + + +    +  
Sbjct: 1   MKEQINDYLHYLNIERGLSANTRQSYERDLEQYLHFL-----EEQKVASWQDVDRFLVIR 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+ K   +K    ++ R +S ++ F ++L++ +IT    + ++   KK+  LP  L   +
Sbjct: 56  FLEKMHEEKKATATVTRMISSLRRFHQFLRQERITDHDPMQHIDTPKKAQKLPSTLTLAE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++         TK +  R+ AIL ++Y  G+R+SE + L   ++      ++  GK
Sbjct: 116 VEKLIE-----APDTTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           GDK RI+PL     + +  Y D   P  +    ++ +F    GK L+     + ++QL R
Sbjct: 171 GDKERIIPLGDYAIQWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVR 230

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT++  K     M +
Sbjct: 231 EAGIYKEVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR----MTD 286

Query: 313 IYDQTHP 319
           +Y Q  P
Sbjct: 287 VYKQHFP 293


>gi|311068948|ref|YP_003973871.1| site-specific tyrosine recombinase XerD [Bacillus atrophaeus 1942]
 gi|310869465|gb|ADP32940.1| site-specific tyrosine recombinase XerD [Bacillus atrophaeus 1942]
          Length = 296

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 161/302 (53%), Gaps = 14/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  + +ERGLS+ T+ SYE D + + +FL     E + + +  +++   I  ++   
Sbjct: 6   KDFIHYVMVERGLSQNTMMSYERDLKSYSLFLT----ETLQVTSWNEVTRIHIIQYLKHL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +      ++  R L+ I+SF ++L + K+T +   +++   K   +LP+ L+ K+   L+
Sbjct: 62  KDSGKSGKTSARHLASIRSFHQFLLREKVTDKDPSVHIETQKTERTLPKVLSLKEVELLL 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D   L     T     R+ A+L LLY  G+R+SE + L   ++      +R  GKG K R
Sbjct: 122 DTPKL-----TSPFGYRDKAMLELLYATGIRVSEMIDLKTSDVHLSMGFVRCFGKGRKER 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           IVP+  +   AI EY       L   N+   LF    GK ++   F + ++++    G+ 
Sbjct: 177 IVPIGETAAHAIEEYLAKARGKLLKKNVSDALFLNHHGKQISRQGFWKNLKKIALEAGIK 236

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        + ++Y Q 
Sbjct: 237 KELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----LKDVYKQY 292

Query: 318 HP 319
           HP
Sbjct: 293 HP 294


>gi|319651425|ref|ZP_08005554.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2]
 gi|317396956|gb|EFV77665.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2]
          Length = 297

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 99/303 (32%), Positives = 167/303 (55%), Gaps = 15/303 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  L +E+GL+K T+ SYE D + +L +L   +EEKI+  ++  +  T+I  F+   
Sbjct: 6   RDFIHYLLVEKGLAKNTIVSYERDLKSYLKYLK--SEEKIS--SLESVQRTQIVQFLGFL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + Q    ++L R ++ I++F ++L + K       +++   +   SLP+ LN ++  TL+
Sbjct: 62  KKQGKSSKTLARHIASIRAFHQFLLREKAVGHDPSVHIETPQMERSLPKVLNMQEVETLL 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D   +           R+ A+L LLY  G+R+SE + L   ++      +R  GKG+K R
Sbjct: 122 DFPEI-----KDHFGLRDKAMLELLYATGIRVSELIGLNIGDVHLTMGFVRCIGKGNKER 176

Query: 199 IVPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           IVP+  +  +A+ +Y +     F    +    LF    GK L+   F + +++L +  G+
Sbjct: 177 IVPIGKTASEALEKYLNEGRGKFAPKKHKDEALFLNHHGKRLSRQGFWKILKRLAQEAGI 236

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        + ++Y Q
Sbjct: 237 EKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----LKDVYSQ 292

Query: 317 THP 319
            HP
Sbjct: 293 YHP 295


>gi|261419412|ref|YP_003253094.1| site-specific tyrosine recombinase XerC [Geobacillus sp. Y412MC61]
 gi|297530613|ref|YP_003671888.1| tyrosine recombinase XerC [Geobacillus sp. C56-T3]
 gi|319766227|ref|YP_004131728.1| tyrosine recombinase XerC [Geobacillus sp. Y412MC52]
 gi|261375869|gb|ACX78612.1| tyrosine recombinase XerC [Geobacillus sp. Y412MC61]
 gi|297253865|gb|ADI27311.1| tyrosine recombinase XerC [Geobacillus sp. C56-T3]
 gi|317111093|gb|ADU93585.1| tyrosine recombinase XerC [Geobacillus sp. Y412MC52]
          Length = 300

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/308 (33%), Positives = 161/308 (52%), Gaps = 25/308 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +++ L+IE+  S+ T+  Y  D  QF  F+     ++  I  + ++SY+++R +++K 
Sbjct: 9   QLFMEYLQIEKNYSQYTIVCYRRDIEQFFRFM-----DEEGIGALNEVSYSDVRLYLTKL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL--NEKQALT 136
             Q++  RS+ R +S ++SF K+L +     E+        KK   +P  L   E +AL 
Sbjct: 64  YEQQLASRSVARKISSLRSFYKFLLREGRVAENPFALATLPKKEQKIPNFLYPKELEALF 123

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           LV++       E   +  RN+A+L LLY  G R+SE   +   ++     T+ I GKG+K
Sbjct: 124 LVND-------ENTALGQRNAALLELLYATGARVSECCHIQLSDVDFVAETVLIHGKGNK 176

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLR 251
            R VP     R+A+  Y      +L    +LP     LF   RG PL P   +  + ++ 
Sbjct: 177 QRYVPFGRPAREALERYIHRGRRELTR--KLPADHRYLFVNARGNPLTPRGVRHILDRIV 234

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               L  + + H LRH+FATHLL+ G DLRS+Q +LGH  LS+TQ+YT+V      D + 
Sbjct: 235 EAAALTQNISPHVLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTK----DRLR 290

Query: 312 EIYDQTHP 319
            IY Q HP
Sbjct: 291 HIYLQAHP 298


>gi|227551150|ref|ZP_03981199.1| site-specific DNA tyrosine recombinase [Enterococcus faecium
           TX1330]
 gi|227179712|gb|EEI60684.1| site-specific DNA tyrosine recombinase [Enterococcus faecium
           TX1330]
          Length = 300

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/308 (33%), Positives = 164/308 (53%), Gaps = 16/308 (5%)

Query: 14  LLKERQN-WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ++KE+ N +L  L IERGLS  T QSYE D  Q+L FL     E+  + + + +    + 
Sbjct: 5   IMKEQINDYLHYLNIERGLSANTRQSYERDLEQYLHFL-----EEQKVASWQDVDRFLVI 59

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F+ K   +K    ++ R +S ++ F ++L++ ++T    + ++   KK+  LP  L   
Sbjct: 60  RFLEKLHEEKKATATVTRMISSLRRFHQFLRQERVTDHDPMQHIDTPKKAQKLPSTLTLA 119

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L++         TK +  R+ AIL ++Y  G+R+SE + L   ++      ++  G
Sbjct: 120 EVEKLIE-----APDTTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVG 174

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KGDK RI+PL     + +  Y D   P  +    ++ +F    GK L+     + ++QL 
Sbjct: 175 KGDKERIIPLGDYAIQWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLV 234

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R  G+    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT++  K     M 
Sbjct: 235 REAGIYKEVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR----MT 290

Query: 312 EIYDQTHP 319
           ++Y Q  P
Sbjct: 291 DVYKQHFP 298


>gi|15614092|ref|NP_242395.1| integrase/recombinase [Bacillus halodurans C-125]
 gi|34223074|sp|Q9KCP0|XERD_BACHD RecName: Full=Tyrosine recombinase xerD
 gi|10174146|dbj|BAB05248.1| integrase/recombinase [Bacillus halodurans C-125]
          Length = 299

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/302 (33%), Positives = 160/302 (52%), Gaps = 14/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L   ++ERGLS  T+QSY  D +Q++     Y E    I++ R ++   I  ++   
Sbjct: 9   QQFLHFQKVERGLSNNTIQSYGRDLKQYIQ----YVERVEEIRSARNITRETILHYLYHL 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R Q   + S+ R+++ I+SF ++L + K++     +++   K +  LP+AL  ++     
Sbjct: 65  REQGRAETSIARAVAAIRSFHQFLLREKLSDSDPTVHVEIPKATKRLPKALTIEEV---- 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL++         RN A+L LLY  G+R+SE + LT  +I      +R  GKG+K R
Sbjct: 121 -EALLNSPQGRDPFSLRNKAMLELLYATGMRVSELIGLTLSDIHLSMGFVRCLGKGNKER 179

Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           I+P+     +A+  Y       L        +F    G+PL+   F + ++QL + + + 
Sbjct: 180 IIPIGQVATEAVESYLANGRGKLMKKQSHDHVFVNHHGRPLSRQGFWKMLKQLAKNVNID 239

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        M ++Y   
Sbjct: 240 KPLTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----MRDVYAHF 295

Query: 318 HP 319
           HP
Sbjct: 296 HP 297


>gi|297571163|ref|YP_003696937.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595]
 gi|296931510|gb|ADH92318.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595]
          Length = 313

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/319 (32%), Positives = 171/319 (53%), Gaps = 14/319 (4%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           E ++ P    FE + ER  + + LE+ RGLS  T ++Y  + R  L F+  ++++  T  
Sbjct: 6   ETDHFP--TQFEQILER--YQRELELRRGLSAHTCRAYLHEARSLLEFVCKHSDDPAT-- 59

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           ++ ++   ++R +++  +       S+ R  + I++F ++L K   T       +++ K 
Sbjct: 60  SLPEIDIRDMRLWLADNQQAGHSRASIARHSASIRTFTRWLFKNAYTAADPGTQLKSPKV 119

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           SN LP  L  +QA  L+  V    + +   +  R++AI+ LLY   +R+SE L+ T  + 
Sbjct: 120 SNELPHVLTVEQARELL-RVAKERTADGNALAIRDAAIVELLYATAIRVSE-LTGTDVSD 177

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNP 240
           +   S LR+ GKGDK RIVP     R A++ + D+    L  N  +  LF G RGK ++P
Sbjct: 178 VSPSSNLRVIGKGDKERIVPFGRPARNALMAWLDVRGTLLEKNPTEQALFVGARGKRIDP 237

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              +  + QL +  GLP   T H LRHS ATHLL  G DLR++Q ILGH  + TTQ YT+
Sbjct: 238 RTVRTLLTQLTKAAGLP-DITPHDLRHSAATHLLDGGSDLRTVQEILGHSSIGTTQRYTH 296

Query: 301 VNSKNGGDWMMEIYDQTHP 319
           V+++     +   + Q HP
Sbjct: 297 VSAER----LRAAFGQAHP 311


>gi|295692872|ref|YP_003601482.1| tyrosine recombinase xerd [Lactobacillus crispatus ST1]
 gi|295030978|emb|CBL50457.1| Tyrosine recombinase xerD [Lactobacillus crispatus ST1]
          Length = 301

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/324 (31%), Positives = 172/324 (53%), Gaps = 26/324 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ME NNL + +         ++L+  ++ERGLS  T+ +Y  D  +F  F+    E   + 
Sbjct: 1   MEKNNLKDQID--------DYLRYSQVERGLSDNTINAYRQDLEEFRTFVE--NEGMASW 50

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            T      +++ AF++++R       S+ R +S ++ F ++L ++ I   + +L +   K
Sbjct: 51  PT----EASDVDAFLARQRDLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPK 106

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K   LP AL++ +      N LL   +  + +  R+ AIL  LY  G+R+SE ++L  Q+
Sbjct: 107 KERRLPTALSQAEM-----NRLLEQPNTKRKLGIRDRAILETLYATGMRVSELINLELQD 161

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI---QLPLFRGIRGKP 237
           + D+   +R+ GKG+K R++P+ P     I +Y +     L L +      +F   RGK 
Sbjct: 162 LHDNLGLVRVLGKGEKERLIPISPVALDWIKKYENEVRDPLILQVGKSDEHIFLNNRGKK 221

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +      + I++  +   +    T HTLRH+FATHLL NG DLR +Q ILGH  +STTQI
Sbjct: 222 ITRQAIWQMIKKYCQMAAITKDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQI 281

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSI 321
           YTN++ K     ++ +Y +THP +
Sbjct: 282 YTNLSQKQ----ILNVYQKTHPRL 301


>gi|227879087|ref|ZP_03996976.1| integrase-recombinase [Lactobacillus crispatus JV-V01]
 gi|256843076|ref|ZP_05548564.1| tyrosine recombinase XerD [Lactobacillus crispatus 125-2-CHN]
 gi|256850272|ref|ZP_05555701.1| integrase/recombinase [Lactobacillus crispatus MV-1A-US]
 gi|262046336|ref|ZP_06019298.1| tyrosine recombinase XerD [Lactobacillus crispatus MV-3A-US]
 gi|293379759|ref|ZP_06625891.1| tyrosine recombinase XerD [Lactobacillus crispatus 214-1]
 gi|312977261|ref|ZP_07789009.1| tyrosine recombinase XerD [Lactobacillus crispatus CTV-05]
 gi|227861328|gb|EEJ68958.1| integrase-recombinase [Lactobacillus crispatus JV-V01]
 gi|256614496|gb|EEU19697.1| tyrosine recombinase XerD [Lactobacillus crispatus 125-2-CHN]
 gi|256712909|gb|EEU27901.1| integrase/recombinase [Lactobacillus crispatus MV-1A-US]
 gi|260573207|gb|EEX29765.1| tyrosine recombinase XerD [Lactobacillus crispatus MV-3A-US]
 gi|290923668|gb|EFE00539.1| tyrosine recombinase XerD [Lactobacillus crispatus 214-1]
 gi|310895692|gb|EFQ44758.1| tyrosine recombinase XerD [Lactobacillus crispatus CTV-05]
          Length = 301

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 98/305 (32%), Positives = 165/305 (54%), Gaps = 18/305 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L+  ++ERGLS  T+ +Y  D  +F  F+    E   +  T      +++ AF++++R
Sbjct: 12  DYLRYSQVERGLSDNTINAYRQDLEEFQTFVE--NEGMASWPT----EASDVDAFLARQR 65

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  S+ R +S ++ F ++L ++ I   + +L +   KK   LP AL++ +      
Sbjct: 66  DLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSQAEM----- 120

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           N LL   +  + +  R+ AIL  LY  G+R+SE ++L  Q++ DD   +R+ GKG+K R+
Sbjct: 121 NRLLEQPNTKRKLGIRDRAILETLYATGMRVSELINLELQDLHDDLGLVRVLGKGEKERL 180

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNI---QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +P+ P     I +Y +     L L +      +F   RGK +      + I++  +   +
Sbjct: 181 IPISPVALDWIKKYENEVRDPLILQVGKSDEHIFLNNRGKKITRQAIWQMIKKYCQMAAI 240

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               T HTLRH+FATHLL NG DLR +Q ILGH  +STTQIYTN++ K     ++ +Y +
Sbjct: 241 TKDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKQ----ILNVYQK 296

Query: 317 THPSI 321
           THP +
Sbjct: 297 THPRL 301


>gi|210634278|ref|ZP_03298051.1| hypothetical protein COLSTE_01973 [Collinsella stercoris DSM 13279]
 gi|210158880|gb|EEA89851.1| hypothetical protein COLSTE_01973 [Collinsella stercoris DSM 13279]
          Length = 302

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 106/320 (33%), Positives = 160/320 (50%), Gaps = 35/320 (10%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL +  + +L +L +ER LS  T+ +Y  D   +  FLA   E  +T      ++  ++ 
Sbjct: 3   ELERCCREYLGHLSVERNLSPYTVAAYRRDLEAYRAFLA---ERGVTGPD--SVTRRDVE 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F++ RR     D S+ R+LS +K   ++L +  I+T      +R  K +  LP  ++  
Sbjct: 58  DFVAHRRETGAADASVNRALSAVKGLHRFLVREGISTTYPTSAIRTPKAAKHLPDVISID 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           QA  L+D     T+       AR+ A L +LYGCGLR+SE   L  +++  D+  L + G
Sbjct: 118 QACALLDQPFPATA-----AGARDHAALEVLYGCGLRVSELTGLDVRDLHLDEEFLLVMG 172

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF-----QRYI 247
           KG K R+ P+  S  +A+  Y       L L  +  L    R   ++P VF      R  
Sbjct: 173 KGSKERLAPITGSALRALEAY-------LTLGARDELMGHARAAGVSPAVFLNARGTRLS 225

Query: 248 RQ-----LRRY---LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           RQ       RY   +G+      HTLRHSFATH+L+ G DLR +Q ILGH  ++TTQIYT
Sbjct: 226 RQSVHAICERYGRMVGIE-GLHPHTLRHSFATHMLAGGADLRVLQEILGHADIATTQIYT 284

Query: 300 NVNSKNGGDWMMEIYDQTHP 319
           +V+       + E+Y   HP
Sbjct: 285 HVDQTQ----LREVYLAAHP 300


>gi|315640716|ref|ZP_07895818.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952]
 gi|315483471|gb|EFU73965.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952]
          Length = 310

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 109/324 (33%), Positives = 163/324 (50%), Gaps = 29/324 (8%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           E  N P I  F+       + Q L +ERG S+ T  +Y  D  QFL FL     E+   +
Sbjct: 8   EQENTPSIQWFD------EFSQYLIVERGYSEKTQAAYAEDFFQFLDFL-----EQSGSR 56

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
               + Y ++R ++S    Q+    S+ R ++ ++SF +YL KR + TE+    +   KK
Sbjct: 57  DFLAIDYRDVRIYLSFLNDQEYSRNSISRKVASLRSFYQYLLKRMVLTENPFAYVHLKKK 116

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           +  LPR   E +   L D+V       T+ ++ RN A+L +LYGCGLR+SE  ++T  +I
Sbjct: 117 NQKLPRFFYEDELQQLFDSV-----KGTEPLEQRNLALLEILYGCGLRVSECAAITLTSI 171

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRG 235
             +   L + GKG K RIVP      KA+  Y        L  F    +    LF    G
Sbjct: 172 DWEHQILLVYGKGSKERIVPFNEHANKAMSHYIQNGRKELLTQFKKEHDY---LFVNHLG 228

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            P+     +  + QL +   L      H LRH+FATHLL+NG D+R++Q +LGH  LSTT
Sbjct: 229 SPVTATGIEYILNQLLKRSQLDSEIHPHKLRHTFATHLLNNGADMRTVQELLGHANLSTT 288

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHP 319
           QIY +V  ++    + + Y + HP
Sbjct: 289 QIYAHVTKES----LQKNYRKFHP 308


>gi|291612618|ref|YP_003522775.1| tyrosine recombinase XerC [Sideroxydans lithotrophicus ES-1]
 gi|291582730|gb|ADE10388.1| tyrosine recombinase XerC [Sideroxydans lithotrophicus ES-1]
          Length = 299

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/310 (33%), Positives = 159/310 (51%), Gaps = 27/310 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L  L  ER  S LT ++Y  D R+          E      +  L    IR +I++ 
Sbjct: 12  QGYLAYLNNERNYSPLTAENYARDIRRLF--------ELAGATPLPDLKSHHIRRYIAQL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +G RSL R LS  + F  YL +      +  + +R  K   +LP AL+  +A+ LV
Sbjct: 64  HGSGLGGRSLARVLSAWRGFYGYLMRDHGCKSNPCVGLRAPKAPKTLPHALSPDEAVKLV 123

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           + +L+ T      +DAR+ A+  LLY  GLR++E +SL P ++    +++R+ GKG+K R
Sbjct: 124 E-MLVATP-----LDARDKAMFELLYSSGLRLAELVSLDPIDMDFADASVRVTGKGNKTR 177

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYL 254
           IVPL      A+  +       +   I  P    LF G  G  ++P   Q  +RQ     
Sbjct: 178 IVPLGSHAIDALKAW-----LAVRDQIAKPGETALFVGKNGARISPRTVQLQLRQRGITQ 232

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+      H LRHSFATH+L + GDLR++Q +LGH  +STTQ+YT+++ +    ++ +IY
Sbjct: 233 GIASGVHPHLLRHSFATHVLQSSGDLRAVQEMLGHASISTTQVYTHLDFQ----YLAKIY 288

Query: 315 DQTHPSITQK 324
           D  HP   +K
Sbjct: 289 DGAHPRAKKK 298


>gi|257887731|ref|ZP_05667384.1| phage integrase [Enterococcus faecium 1,141,733]
 gi|257896226|ref|ZP_05675879.1| phage integrase [Enterococcus faecium Com12]
 gi|293379533|ref|ZP_06625675.1| tyrosine recombinase XerD [Enterococcus faecium PC4.1]
 gi|257823785|gb|EEV50717.1| phage integrase [Enterococcus faecium 1,141,733]
 gi|257832791|gb|EEV59212.1| phage integrase [Enterococcus faecium Com12]
 gi|292641842|gb|EFF60010.1| tyrosine recombinase XerD [Enterococcus faecium PC4.1]
          Length = 295

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 102/307 (33%), Positives = 163/307 (53%), Gaps = 16/307 (5%)

Query: 15  LKERQN-WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +KE+ N +L  L IERGLS  T QSYE D  Q+L FL     E+  + + + +    +  
Sbjct: 1   MKEQINDYLHYLNIERGLSANTRQSYERDLEQYLHFL-----EEQKVASWQDVDRFLVIR 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+ K   +K    ++ R +S ++ F ++L++ ++T    + ++   KK+  LP  L   +
Sbjct: 56  FLEKLHEEKKATATVTRMISSLRRFHQFLRQERVTDHDPMQHIDTPKKAQKLPSTLTLAE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++         TK +  R+ AIL ++Y  G+R+SE + L   ++      ++  GK
Sbjct: 116 VEKLIE-----APDTTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           GDK RI+PL     + +  Y D   P  +    ++ +F    GK L+     + ++QL R
Sbjct: 171 GDKERIIPLGDYAIQWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVR 230

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT++  K     M +
Sbjct: 231 EAGIYKEVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR----MTD 286

Query: 313 IYDQTHP 319
           +Y Q  P
Sbjct: 287 VYKQHFP 293


>gi|117923766|ref|YP_864383.1| tyrosine recombinase XerC subunit [Magnetococcus sp. MC-1]
 gi|117607522|gb|ABK42977.1| tyrosine recombinase XerC subunit [Magnetococcus sp. MC-1]
          Length = 335

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 104/313 (33%), Positives = 159/313 (50%), Gaps = 16/313 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +  +L  ER LS  T + Y  D   F  F A Y  E +T   + QL    I AF+ + 
Sbjct: 7   QRFFDHLMQERRLSVHTEKGYRRDLEAFSAFYAEYEGEPLTPTKLAQLDGDHILAFLGRG 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   +++R ++ ++++  Y+++  + + +    + + K    LPRA + +Q L L+
Sbjct: 67  HREGLARTTMQRRMAALRAWFNYMQREGLVSGNPAAAVSSPKAPKRLPRAPSVEQTLNLL 126

Query: 139 DNVLLHT-SHETKWIDA---------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           D       S E    D          R++A+L LLY  GLRISEA +L   ++      L
Sbjct: 127 DKSTPRPLSPEASDFDTSAWAVLRSLRDTALLELLYSAGLRISEACNLDRADVDLRGGEL 186

Query: 189 RIQ-GKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           R++ GKG K R+VPL  +   AI  +          L+   P+F G  GK LN    QR 
Sbjct: 187 RVRHGKGGKQRMVPLGRTAVAAIEAWLQARTRAKPQLDPMGPIFTGQLGKRLNSREGQRL 246

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           + + R  L LP S T H LRH+FATHLL  G DLR+IQ ++GH  LS TQ YT+++ +  
Sbjct: 247 LEKWRARLDLPESVTPHALRHAFATHLLQAGADLRAIQEMMGHASLSATQKYTHLDMQA- 305

Query: 307 GDWMMEIYDQTHP 319
              + ++YD  HP
Sbjct: 306 ---LAKVYDAAHP 315


>gi|254429866|ref|ZP_05043573.1| tyrosine recombinase XerD [Alcanivorax sp. DG881]
 gi|196196035|gb|EDX90994.1| tyrosine recombinase XerD [Alcanivorax sp. DG881]
          Length = 312

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/305 (33%), Positives = 154/305 (50%), Gaps = 20/305 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +WL    +E+GLS+ +L +Y  D  Q  ++L     ++ T+    +    E   F++ R 
Sbjct: 19  SWLDQQWLEKGLSEHSLSNYRRDISQLAVWL---QHQQATLLACERYQLLE---FLAARH 72

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q +  RS+ R LS +KSF ++LK+     E   L +   K    LP+ L+E     L+ 
Sbjct: 73  QQGLSARSVARQLSAVKSFYRWLKREGRIAEDPALLIERPKLGRPLPKTLSEADVEALLA 132

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              L T      +  R+ A+L +LY  GLR++E ++LT   I   Q  +R+ GKGDK R+
Sbjct: 133 APDLSTP-----LGLRDRAMLEVLYATGLRVTELVTLTQSQINPRQGLIRVIGKGDKERL 187

Query: 200 VPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           VPL       +  Y       L   D     Q  LF   RG  +    F   I+QL    
Sbjct: 188 VPLGEEALHWLARYAQEGRPQLLAADQQGGNQELLFPSRRGTCMTRQTFWHRIKQLAVVA 247

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V  +     + ++Y
Sbjct: 248 GVQKKLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQQR----LQDVY 303

Query: 315 DQTHP 319
            + HP
Sbjct: 304 QKHHP 308


>gi|56419747|ref|YP_147065.1| site-specific tyrosine recombinase XerC [Geobacillus kaustophilus
           HTA426]
 gi|56379589|dbj|BAD75497.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
          Length = 289

 Score =  153 bits (386), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 101/305 (33%), Positives = 159/305 (52%), Gaps = 25/305 (8%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           ++ L+IE+  S+ T+  Y  D  QF  F+     ++  I  + ++SY+++R +++K   Q
Sbjct: 1   MEYLQIEKNYSQYTIVCYRRDIEQFFRFM-----DEEGIGALNEVSYSDVRLYLTKLYEQ 55

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL--NEKQALTLVD 139
           ++  RS+ R +S ++SF K+L +     E+        KK   +P  L   E +AL LV+
Sbjct: 56  QLASRSVARKISSLRSFYKFLLREGRAAENPFALATLPKKEQKIPNFLYPKELEALFLVN 115

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           +       E   +  RN+A+L LLY  G R+SE   +   ++     T+ I GKG+K R 
Sbjct: 116 D-------ENTALGQRNAALLELLYATGARVSECCHIQLSDVDFVAETVLIHGKGNKQRY 168

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYL 254
           VP     R+A+  Y      +L    +LP     LF   RG PL P   +  + ++    
Sbjct: 169 VPFGRPAREALERYIHRGRRELTR--KLPADHRYLFVNARGNPLTPRGVRHILDRIVEAA 226

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            L  + + H LRH+FATHLL+ G DLRS+Q +LGH  LS+TQ+YT+V      D +  IY
Sbjct: 227 ALTQNISPHVLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTK----DRLRHIY 282

Query: 315 DQTHP 319
            Q HP
Sbjct: 283 LQAHP 287


>gi|188586285|ref|YP_001917830.1| tyrosine recombinase XerD subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350972|gb|ACB85242.1| tyrosine recombinase XerD subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 295

 Score =  153 bits (386), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 97/296 (32%), Positives = 166/296 (56%), Gaps = 15/296 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +ERGLS+ TL SY  D + FL FL    ++ +T    +++  T I  ++   + +   
Sbjct: 12  LNVERGLSENTLNSYLRDLKNFLEFL---NQQGVT--KWQEVKRTHIMKYLIFMKEKGKA 66

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             ++ R+++ ++SF ++L +  + +E+   ++   K+   LP  L+ ++    VD  LL+
Sbjct: 67  SATVTRNIASVRSFFQFLLQEGMISENPSTDLETPKQEKKLPEILSPQE----VDK-LLN 121

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
               T +   R+ A+L +LY  G+R+SE +SL  +++  +   +  +GKGDK RIVPL  
Sbjct: 122 QPDTTDFKGKRDKAMLEVLYATGMRVSELISLNVEHVDSNNGYILCKGKGDKERIVPLGK 181

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              K++ +Y       L  N+  P LF    GK L+   F + +++    +G+    T H
Sbjct: 182 MAIKSVSDYISKSRPQLRKNLSEPALFLNHHGKRLSRQGFWKILKKYAEKIGIKQKITPH 241

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           TLRHSFATHLL NG DLR++Q +LGH  +STTQIYT++  +     + ++Y ++HP
Sbjct: 242 TLRHSFATHLLENGADLRAVQEMLGHSDISTTQIYTHLTKQR----LKDVYSKSHP 293


>gi|239908039|ref|YP_002954780.1| tyrosine recombinase XerC [Desulfovibrio magneticus RS-1]
 gi|239797905|dbj|BAH76894.1| tyrosine recombinase XerC [Desulfovibrio magneticus RS-1]
          Length = 308

 Score =  153 bits (386), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 105/313 (33%), Positives = 156/313 (49%), Gaps = 15/313 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L   +G S  T+ +YE D  QF  FL       + +     ++   +R F+++  
Sbjct: 3   EFLTALAAVKGYSPATVAAYEDDLAQFEAFL---RGRGLGLDAPEAITRDHVRGFLAELH 59

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            ++    S+ R LS ++ F KY  ++K         ++N K     PRALN  +A+ LV 
Sbjct: 60  RRRAAKSSMGRKLSTLRGFFKYQLQKKRLAADPTAGLKNPKAERRGPRALNADEAVALVT 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                 + +      R+ A+  LLYG GLRISEAL L   ++   Q   R+ GKG K R+
Sbjct: 120 PPPAAPAADGSAAACRDLALAELLYGSGLRISEALGLDLDDLDLSQGIARVMGKGSKERL 179

Query: 200 VPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            PL  + R+ + EY     +L P  +    +L LF G RG  L+     R +  L +  G
Sbjct: 180 APLSDASRERLREYLRRRGELGPGPM----ELALFLGNRGGRLDRRQAARIVDALAKGAG 235

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L      H LRHSFATHLL +G DLRS+Q +LGH RL+TT  YTN++       ++ IYD
Sbjct: 236 LARHAHPHMLRHSFATHLLESGADLRSVQELLGHARLTTTTRYTNLDLAR----IVGIYD 291

Query: 316 QTHPSITQKDKKN 328
           + HP    K + +
Sbjct: 292 KAHPRSDHKGEGD 304


>gi|297537394|ref|YP_003673163.1| tyrosine recombinase XerC [Methylotenera sp. 301]
 gi|297256741|gb|ADI28586.1| tyrosine recombinase XerC [Methylotenera sp. 301]
          Length = 294

 Score =  153 bits (386), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 103/309 (33%), Positives = 168/309 (54%), Gaps = 25/309 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++LQ+L  ERGLS LTL++Y  D  Q L  LA    +   + T+   + T+IR +I+   
Sbjct: 6   DYLQHLTFERGLSALTLKNYARDI-QLLESLA----DNTALDTV---TNTQIRRYIATLH 57

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +  +++ R+LS  + F  YL   K  T++ ++ +R  K + +LP+AL+  QA+  VD
Sbjct: 58  GRGLSGKTIARALSAWRGFYNYLTHHKGYTQNPVMGLRAPKSAKTLPQALSTDQAVKFVD 117

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                       ++ R+ AIL L Y  GLR++E ++L    +   + T+ + GKG+K RI
Sbjct: 118 ------IKGDGPLERRDHAILELFYSSGLRLAELVNLDIGMLDFSEGTVTVTGKGNKTRI 171

Query: 200 VPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           VP+      AI  +      +   D+N N    LF   +GK + P   Q  +++     G
Sbjct: 172 VPMGSHAVSAIQTWLQSRALIKIADINPN---ALFVTQQGKRITPRAVQYRVKEWSIKQG 228

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L +S   H LRHSFA+H+L +  DLR++Q +LGH  +STTQIYT+++ ++    +  IYD
Sbjct: 229 LNISMHPHLLRHSFASHVLQSSQDLRAVQEMLGHANISTTQIYTHLDFQH----LASIYD 284

Query: 316 QTHPSITQK 324
             HP   +K
Sbjct: 285 SAHPRAKKK 293


>gi|89091916|ref|ZP_01164871.1| tyrosine recombinase [Oceanospirillum sp. MED92]
 gi|89083651|gb|EAR62868.1| tyrosine recombinase [Oceanospirillum sp. MED92]
          Length = 299

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 105/319 (32%), Positives = 173/319 (54%), Gaps = 26/319 (8%)

Query: 15  LKERQ--NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +KE Q   ++  L  ER LS  TL +Y  D  +F  F    TEE+  I     ++  ++R
Sbjct: 1   MKEAQLEQFIHYLANERQLSPHTLDNYTRDINRFFDF----TEEQ-GIPAWSSVTAKQVR 55

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F ++   Q +  +S++RSLS ++SF ++L +  +  ++    ++  K    LP  L+  
Sbjct: 56  QFAAQIHRQGLAGKSIQRSLSALRSFFRFLSREGVVDQNPADAVQAPKSQRKLPETLDVD 115

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q   L+D  +         + AR+SAI+ L+Y  GLRISE + L   ++     +LR+ G
Sbjct: 116 QIDRLLDIPV------KDAVSARDSAIMELIYSSGLRISELVGLDIHSLDLADHSLRVLG 169

Query: 193 KGDKIRIVPLLPSVRKAI---LEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           KG+K R +P+     +AI   L+Y ++L  FD N      LF   RGK ++    Q+ + 
Sbjct: 170 KGNKQRELPIGRKALQAIDRWLDYRHELASFDEN-----ALFVSSRGKRISVRTVQQRMY 224

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
              +YL +      H LRHSFA+H+L + GDLR++Q +LGH  +STTQIYT+++ ++   
Sbjct: 225 HWGKYLEVNGHVHPHRLRHSFASHMLESSGDLRAVQELLGHEDISTTQIYTHLDFQH--- 281

Query: 309 WMMEIYDQTHPSITQKDKK 327
            +M++Y+  HP   +K KK
Sbjct: 282 -LMQVYEGAHPRAHKKGKK 299


>gi|78224235|ref|YP_385982.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15]
 gi|78195490|gb|ABB33257.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15]
          Length = 294

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 106/308 (34%), Positives = 155/308 (50%), Gaps = 24/308 (7%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +E   ++++LE ER +S  TL +Y  D  QF  F+   T      + +  L      A +
Sbjct: 3   QEIAAFIRHLETERNVSPHTLAAYRSDLAQFREFVRQETGAAAEPEGVSHLLIRRWLALL 62

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            +  T+     S+ R L+ +++F K+L +     ++    +   KK   +P  L+  +A 
Sbjct: 63  HRDHTKS----SVGRKLAAVRAFFKHLIRTGRLVKNPAELVSTPKKEKKVPYHLSIDEAT 118

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            LV+     T  E   +  R+ AIL  LY CG+R+SE   L    I  D  T R+ GKG 
Sbjct: 119 ALVE-----TPKEPDILSLRDRAILETLYSCGVRVSELTGLNIGGIDLDDGTARVLGKGG 173

Query: 196 KIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           K RIVP+  S+ +A L +Y    +  P D       PLF   RG  L P   +R + +  
Sbjct: 174 KERIVPV-GSIARAALSHYLTARNHPPLDA------PLFTNARGGRLTPRSVRRVVDKHI 226

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             +      + HTLRH+FATHLL  G DLR+IQ +LGH  LSTTQ YT+V    G D +M
Sbjct: 227 LRIAAMRKISPHTLRHTFATHLLEGGADLRAIQELLGHASLSTTQKYTHV----GIDRLM 282

Query: 312 EIYDQTHP 319
           E+YD+ HP
Sbjct: 283 EVYDKAHP 290


>gi|169831443|ref|YP_001717425.1| tyrosine recombinase XerD [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169638287|gb|ACA59793.1| tyrosine recombinase XerD [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 295

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 162/304 (53%), Gaps = 23/304 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L +ERGLS+ TL +Y  D +QF  FLA        ++ +  L  + I A++  ++ 
Sbjct: 8   FLNHLHVERGLSENTLAAYRGDLQQFGAFLAAQG-----VRDLNDLQASHITAYLLAQK- 61

Query: 81  QKIGDR--SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            ++G R  ++ R LS +++FLK+L    + T +      + K++  LPR L        V
Sbjct: 62  -RLGRRPATVARRLSAVRAFLKFLTAEGLVTANPAEYTGSPKQAQRLPRVLR-------V 113

Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           D V  LL        +  R+ A++ +LY  GLR+SEA++L   ++      +R  GKG +
Sbjct: 114 DEVDRLLTAPDTANPMGLRDRALMEVLYASGLRVSEAVNLKVGDLDLRGGLVRCVGKGGR 173

Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R+VP+     + + EY     P  L       LF   RG+PL      + +++  R  G
Sbjct: 174 ERVVPVGGEAVRLVDEYLARSRPLLLKGRRTRFLFVNRRGQPLTRQTVWKLLKRYAREAG 233

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFATHLL NG DLR++Q +LGH  + TTQIYT++ S+     +  +YD
Sbjct: 234 IQKEITPHTLRHSFATHLLENGADLRAVQEMLGHADIVTTQIYTHLTSRG----LRAVYD 289

Query: 316 QTHP 319
           +THP
Sbjct: 290 RTHP 293


>gi|163859107|ref|YP_001633405.1| site-specific tyrosine recombinase XerC [Bordetella petrii DSM
           12804]
 gi|163262835|emb|CAP45138.1| putative integrase/recombinase [Bordetella petrii]
          Length = 326

 Score =  152 bits (385), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 99/319 (31%), Positives = 158/319 (49%), Gaps = 27/319 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WLQ+L   R  S  TL +Y  D RQ  +        +     + QL+   IR F+++   
Sbjct: 19  WLQHLRAHRRYSPHTLDAYRRDLRQLAVL------AQAAGLPLEQLANGHIRQFVARLHA 72

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q +G RSL R+L+  + F ++         + +  +R  K +  LP+AL+ +QA  L+D+
Sbjct: 73  QGLGPRSLARTLAAWRGFYQWWAPGAGLAGNPVAGVRAPKAARGLPKALSVEQAQALLDH 132

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMD---------DQSTLR 189
                + +   +  R+ A+  LLY  GLR+SE   L +  +   D         D + + 
Sbjct: 133 ATSRLATDPAGL--RDRAMFELLYSSGLRLSELVGLDIRYERSADYESRSWLNLDDAEVV 190

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCP----FDLNLNIQLPLFRGIRGKPLNPGVFQR 245
           + GKG K R VP+  +   A+  + D  P       +      LF G RG+ + P V Q 
Sbjct: 191 VLGKGGKRRAVPVGQAALTALRRWIDARPQLAAAAASAGDAAALFVGARGRRIAPRVVQL 250

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            + +L +  GLP     H LRHSFA+H+L +  DLR++Q +LGH  +STTQIYT ++ ++
Sbjct: 251 QLARLAQAAGLPAHVHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQIYTRLDFQH 310

Query: 306 GGDWMMEIYDQTHPSITQK 324
               + + YDQ HP   +K
Sbjct: 311 ----LAKAYDQAHPRAGRK 325


>gi|269219629|ref|ZP_06163483.1| integrase/recombinase XerC [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269210871|gb|EEZ77211.1| integrase/recombinase XerC [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 303

 Score =  152 bits (384), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 104/304 (34%), Positives = 162/304 (53%), Gaps = 21/304 (6%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFL----AFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + L + RGLS+ T+ +Y  + R  L F+        EE + +   R L   ++RA++++ 
Sbjct: 12  RELRLRRGLSENTVAAYVREARSLLEFIWEIAGGDVEEPMDL---RGLELADVRAWLARS 68

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + +     +L R  + I++F ++L ++  T       ++  +  N+LPR LN++QA  L 
Sbjct: 69  QAKGRSRSTLARHSASIRTFCRWLHRKGHTDVDAAARLKAPRADNALPRVLNQEQARRLA 128

Query: 139 DNV-LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++   L  S +   +  R+ A + LLY  G+RI E  SL   ++  D STLR+ GKGDK 
Sbjct: 129 EHAGRLAASGDP--LALRDHAAVELLYASGIRIGELCSLDVDSLGAD-STLRVIGKGDKE 185

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           RIVP     R+A+  Y    P    L ++    LF G RG  L+P   ++ I +L    G
Sbjct: 186 RIVPFGVPARRALTAYL---PARAQLLVRPNRALFLGARGGRLDPRTLRKTIHRLAASAG 242

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +P   + H LRHS ATHLL  G DLR++Q ILGH  L TTQ YT+V+S+     +   + 
Sbjct: 243 VP-DISPHDLRHSAATHLLDGGSDLRTVQEILGHASLGTTQRYTHVSSER----LRAAFT 297

Query: 316 QTHP 319
           Q HP
Sbjct: 298 QAHP 301


>gi|302389829|ref|YP_003825650.1| tyrosine recombinase XerD subunit [Thermosediminibacter oceani DSM
           16646]
 gi|302200457|gb|ADL08027.1| tyrosine recombinase XerD subunit [Thermosediminibacter oceani DSM
           16646]
          Length = 299

 Score =  152 bits (384), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 107/318 (33%), Positives = 164/318 (51%), Gaps = 38/318 (11%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ELLK+   +L+ L +E+GL++ T++SY  D + +L+FL         I  I+  S T I 
Sbjct: 7   ELLKQ---FLEFLSVEKGLARNTIESYRRDLKSYLVFL-----RSQHIPDIKFTSKTTII 58

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +++   +       S+ R+ + IKSF  +L + +   E   +N+   K    LPR L  +
Sbjct: 59  SYLLLMQKSGKASSSISRACAAIKSFYHFLVRERYIQEDPTVNLDTPKLEKKLPRVLTVE 118

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +        LL     +  +  R+  +L +LY  G+R+SE +SLT  ++  D   LR  G
Sbjct: 119 EV-----ERLLEQPDTSNPLGFRDKTMLEVLYATGIRVSELISLTVDDVNLDMGFLRCLG 173

Query: 193 KGDKIRIVPL-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
           KG K RIVP+           +  VRK IL+         + NI   LF    G+ L   
Sbjct: 174 KGSKERIVPIGSFAVNYLRQYINDVRKKILK-------GKSTNI---LFVNHMGQALTRQ 223

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            F + I++  R  G+    T HTLRHSFATHL+ NG DLR++Q +LGH  +STTQ+YT++
Sbjct: 224 GFWKIIKKYARKAGINKVITPHTLRHSFATHLIENGADLRAVQEMLGHADISTTQVYTHI 283

Query: 302 NSKNGGDWMMEIYDQTHP 319
                   + E+YD+THP
Sbjct: 284 TRTR----IKEVYDKTHP 297


>gi|257784281|ref|YP_003179498.1| tyrosine recombinase XerD [Atopobium parvulum DSM 20469]
 gi|257472788|gb|ACV50907.1| tyrosine recombinase XerD [Atopobium parvulum DSM 20469]
          Length = 302

 Score =  152 bits (384), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 165/308 (53%), Gaps = 12/308 (3%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            +L + R  ++  + +ERGLS  TL +Y  D   +L +L   + +KIT  +  Q++ +++
Sbjct: 1   MDLAQARTEYIAYVAVERGLSVNTLDAYTRDLEGYLFWL---SGKKIT--SPNQVTRSDV 55

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
             +I   R   +   S++R  + I++F K++   +I   S   ++    +   LP  +++
Sbjct: 56  EEYIGSLRDLGMAPASVERHTAAIRNFHKFMAVEQICESSPAEDLPTTARIQRLPDVISQ 115

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           ++A  L+D    ++      +  R+ AIL LLYGCGLR+SE   L  + ++ +   LR+ 
Sbjct: 116 EKAEELLDQPFPNSP-----LGIRDKAILELLYGCGLRVSELCDLEVRGVLLEDELLRVF 170

Query: 192 GKGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           GKG K R+VP+L S  +A+  Y ++     L       +F   RG  ++     + +   
Sbjct: 171 GKGSKERVVPVLGSAYRALKTYLFEARSLLLKHGQVSEVFVNARGGRISRQSVHKLVANY 230

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            R +G+      HTLRHSFATHLL  G DLRS+Q +LGH  +STTQ+YT+V+  +  D  
Sbjct: 231 GRVVGIE-GLHPHTLRHSFATHLLEGGADLRSVQELLGHVDISTTQLYTHVDRSHIRDVY 289

Query: 311 MEIYDQTH 318
           +E + + H
Sbjct: 290 LEAHPRAH 297


>gi|332140209|ref|YP_004425947.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550231|gb|AEA96949.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 308

 Score =  152 bits (384), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 96/285 (33%), Positives = 157/285 (55%), Gaps = 10/285 (3%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +++ L +E+GLS+ T QSY  D  +  +F          I+ I  LS  +++ +++ R 
Sbjct: 21  GFIEMLWLEKGLSEHTQQSYRTDLSKLAVF-----SNNQGIKDIAVLSTEQLQDYLAYRH 75

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +  RS +R+LS I++F  YL  ++I  +S +  + N K   +LP +L+E+Q    V+
Sbjct: 76  DKGLSTRSTQRALSAIRAFFVYLISKQIRVDSPVSALSNPKTPKALPASLSEQQ----VE 131

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           + LL+       I+ R+ ++L +LY  GLR+SE + LT   I   Q  +R+ GKG+K R+
Sbjct: 132 D-LLNAPQTDDPIECRDRSMLEVLYATGLRVSELIGLTMDQISLQQGVVRVVGKGNKERL 190

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPL     + +L Y       L       ++   RG+ +    F   I+      G+   
Sbjct: 191 VPLGEEAIEWLLTYIKTARPILATKTSDFVYLSKRGQKMTRQTFWHRIKYYAVKAGIEQH 250

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++
Sbjct: 251 LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATE 295


>gi|121535764|ref|ZP_01667566.1| tyrosine recombinase XerD [Thermosinus carboxydivorans Nor1]
 gi|121305663|gb|EAX46603.1| tyrosine recombinase XerD [Thermosinus carboxydivorans Nor1]
          Length = 295

 Score =  152 bits (383), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 109/302 (36%), Positives = 162/302 (53%), Gaps = 19/302 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  L +ERGL++ TL+SY  D RQF +FL     +K+ I  I+  +   I  +++  ++
Sbjct: 8   FINYLAVERGLAQNTLESYGRDLRQFQLFL---QNDKLDI--IKDSNRNTILNYLNNLQS 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN--EKQALTLV 138
           +     ++ R+L+ IKSF +YL + +   +    N+ + K    LP+ L+  E + L   
Sbjct: 63  KGRAVSTISRNLAAIKSFYQYLVRERYIDKDPAANLESPKLEKKLPKILSIAEVEELLKQ 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            N LL T         R+ A+L LLY  G+R+SE +SL   ++  D   ++  GKG K R
Sbjct: 123 PNSLLPTG-------LRDKAMLELLYATGIRVSELISLNITDVNLDMGYIKCYGKGAKER 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           IVPL     K + EY       L      P LF    G  L    F + I++  +   + 
Sbjct: 176 IVPLGSIAAKCVQEYIAKGRPKLVRTYDEPALFVNHHGNRLTRQGFWKIIKKYAQEANIT 235

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT+V +KN    + E+YD+ 
Sbjct: 236 KEITPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHV-TKN---RLKEVYDKA 291

Query: 318 HP 319
           HP
Sbjct: 292 HP 293


>gi|327183467|gb|AEA31914.1| tyrosine recombinase xerD [Lactobacillus amylovorus GRL 1118]
          Length = 301

 Score =  152 bits (383), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 101/312 (32%), Positives = 168/312 (53%), Gaps = 18/312 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL  +  ++L+  ++ERGLS  T+ +Y  D  ++L   +F  +E ++         +++ 
Sbjct: 5   ELQDQIDDYLRFSQVERGLSTNTISAYRQDLEEYL---SFIKKEGVSSWPT---EASDVD 58

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           AF++++R       S+ R +S ++ F ++L ++ I   + +L +   KK   LP AL+ +
Sbjct: 59  AFLARQRDLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSRE 118

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +      N LL      + +  R+ AIL  LY  G+R+SE ++L  Q+I +D   +R+ G
Sbjct: 119 EV-----NRLLEQPDVEQKLGLRDRAILETLYATGMRVSELINLELQDIHEDLGLIRVLG 173

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI---QLPLFRGIRGKPLNPGVFQRYIRQ 249
           KG K R++P+ P     I +Y       L L        LF   RG  L      + I++
Sbjct: 174 KGSKERLIPISPVALHWIDKYQKQVRDPLILKSGKNDEHLFLNNRGGKLTRQAIWQMIKK 233

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +  G+    T HTLRH+FATHLL NG DLR +Q ILGH  +STTQIYTN++ K+    
Sbjct: 234 YCQMAGITKDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKH---- 289

Query: 310 MMEIYDQTHPSI 321
           ++++Y +THP +
Sbjct: 290 ILQVYQKTHPRL 301


>gi|300361568|ref|ZP_07057745.1| tyrosine recombinase XerD [Lactobacillus gasseri JV-V03]
 gi|300354187|gb|EFJ70058.1| tyrosine recombinase XerD [Lactobacillus gasseri JV-V03]
          Length = 302

 Score =  152 bits (383), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 99/305 (32%), Positives = 165/305 (54%), Gaps = 20/305 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L+  ++ERGLS  T+ SY  D  ++L +L    E      T  ++ Y  + AF++ +
Sbjct: 12  EDYLRFSQVERGLSPNTIISYRTDLEEYLDYLQDQNE------TSWEVDYLVVDAFLAAQ 65

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + +     S+ R +S ++ F ++L ++ I     ++ + + K    LP AL+E++    V
Sbjct: 66  KDKGKATTSISRMISSLRKFYQWLLRQDIIERDPLIKIDSPKSERRLPTALSEEE----V 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D +L      T  +  R+ A+L LLY  G+R+SE ++L   +I  D   +R+ GKG K R
Sbjct: 122 DKLLAAPDTNTP-LGIRDRAMLELLYATGMRVSELINLRTGDIHSDLKIIRVLGKGSKER 180

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +VP+   V  + LE Y     D  +         +F    G  L      + I++  + +
Sbjct: 181 LVPI-TEVALSWLEKYQKDVRDAQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYCQLV 239

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+  + T HTLRH+FATHLL NG DLR +Q ILGH  ++TTQIYTN+  K+    ++E+Y
Sbjct: 240 GITKNVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKH----ILEVY 295

Query: 315 DQTHP 319
           +Q HP
Sbjct: 296 NQAHP 300


>gi|157692850|ref|YP_001487312.1| site-specific tyrosine recombinase XerD [Bacillus pumilus SAFR-032]
 gi|157681608|gb|ABV62752.1| tyrosine recombinase [Bacillus pumilus SAFR-032]
          Length = 296

 Score =  152 bits (383), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 102/308 (33%), Positives = 162/308 (52%), Gaps = 28/308 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +++  + +ERGLS+ T+ SY+ D + +L FL   T E+++   I+ ++   I  ++ + +
Sbjct: 7   DFIHFMTVERGLSENTIVSYKRDLQNYLSFLM--THEQLS--DIKDVTRLHIIHYLKQLK 62

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +    ++  R LS I+SF ++L + K+T +    N+   K    LP+ L+  +   L+D
Sbjct: 63  EEGKSSKTSVRHLSSIRSFHQFLLREKVTKDDPSWNIETQKTERKLPKVLSLGEVEKLLD 122

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
               HT       D R+ A+L LLY  G+R+SE L LT  ++      +R  GKG K RI
Sbjct: 123 TPNQHTP-----FDYRDKAMLELLYATGIRVSEMLDLTLADVHLTMGFIRCFGKGRKERI 177

Query: 200 VPLLPSVRKAILEYYDLC--------PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           VP+  +   AI EY +          P D        LF    GK ++   F + +++  
Sbjct: 178 VPIGEAAASAIEEYLEKGRGKLLKKQPAD-------ALFLNHHGKKMSRQGFWKNLKKRA 230

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        + 
Sbjct: 231 LEAGIQKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----LK 286

Query: 312 EIYDQTHP 319
           ++Y + HP
Sbjct: 287 DVYHKFHP 294


>gi|224369851|ref|YP_002604015.1| site-specific recombinase XerD (DNA replication, recombination and
           repair) [Desulfobacterium autotrophicum HRM2]
 gi|223692568|gb|ACN15851.1| site-specific recombinase XerD (DNA replication, recombination and
           repair) [Desulfobacterium autotrophicum HRM2]
          Length = 297

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/305 (32%), Positives = 155/305 (50%), Gaps = 21/305 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIF------LAFYTEEKITIQTIRQLSYTEIRAF 74
           +LQ L  E+G S  T+++Y  D   FL F      +A  T+E++ ++ IR      +R F
Sbjct: 6   FLQTLSSEKGYSPHTIRAYGGDLTAFLGFCFPGKPVAAITDEQL-LKEIRDSETNPVRGF 64

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +     +K+  R++ R LS +KSF  YL        +    +   K   S+P+ L   + 
Sbjct: 65  LMDLAKKKVTRRTISRRLSALKSFFNYLVVVGKIEVNPAQGVSAPKLPRSIPQFLTVDEL 124

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
            TL+D++   T      +D RN A+  L Y  G+R+SE  +L   +I  +   +R++GKG
Sbjct: 125 FTLLDSIKTRT-----VVDKRNRAVFELFYSTGMRVSELSNLNVGDIDRESHLVRVRGKG 179

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           ++ R+VP+     KA+ +Y      +        LF        +    +R +  L +  
Sbjct: 180 NRERLVPVGDRALKAVDDYRTCIDGEFG-----ALFLNRDAHRFSDSSIRRVLSVLVKAC 234

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           GL +  + HTLRHSFATH+L  G DLR IQ ILGH  LS+TQIYT+V        +ME+Y
Sbjct: 235 GLGVPVSPHTLRHSFATHMLDAGADLRGIQEILGHASLSSTQIYTHVTYAR----LMEVY 290

Query: 315 DQTHP 319
           D+ HP
Sbjct: 291 DRAHP 295


>gi|227890931|ref|ZP_04008736.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus
           salivarius ATCC 11741]
 gi|227867340|gb|EEJ74761.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus
           salivarius ATCC 11741]
          Length = 290

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/302 (33%), Positives = 167/302 (55%), Gaps = 17/302 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L++ERGLS+ T+ SY  D + FL +L      +  I + +Q++   I  ++   +
Sbjct: 2   DYLHYLKVERGLSENTINSYGIDLKLFLEYL-----RENEIPSFKQVNKEVIVNYMQAEK 56

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                + S+ RS+S ++ F +YL + KI  +  +L +   KK   LP+ L +++      
Sbjct: 57  NNNKANSSILRSVSSLRKFFQYLAQEKIIEKDPMLLIDTPKKKQHLPQVLTKEEV----- 111

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LLH+ +  + +  R+ A+L L+Y  GLRISE ++L  +++     TL+  GKG K RI
Sbjct: 112 EKLLHSPNTGQVLGLRDRAMLELMYATGLRISEIINLKLEDLHLTMGTLQTLGKGHKERI 171

Query: 200 VPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYLGLP 257
           VP+     K +  Y +   P  L       LF    G  L   GV++    ++R+  G+ 
Sbjct: 172 VPVGDEAIKWVNRYLEEARPKLLKQKRSNYLFLNFHGNNLTRQGVWKNLKAEVRK-AGIQ 230

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + T HTLRHSFATH+L NG DLR +Q +LGH  +STTQIYT++++K     + +IY++ 
Sbjct: 231 KNITPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHLSNKQ----LTDIYNRA 286

Query: 318 HP 319
           HP
Sbjct: 287 HP 288


>gi|114566378|ref|YP_753532.1| hypothetical protein Swol_0842 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337313|gb|ABI68161.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 290

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/300 (32%), Positives = 162/300 (54%), Gaps = 17/300 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLA---FYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           + +E+  S  TL SY+ D  QF  FL+       E++ ++ I   S+  +R ++++ + +
Sbjct: 1   MRVEKSASNFTLSSYKTDLSQFFAFLSQKKGINPEEVGVELI---SHNSVRKYLAQMQEK 57

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +   ++ R L+ ++SF+K+L +  I  ++ I  +   K+   LPR L  ++      ++
Sbjct: 58  GLSRATMARKLAALRSFIKFLCRENILADNPIAAVSTPKQERKLPRFLYTREI-----DL 112

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           L++    +     R+ AIL  LY  GLR+SE  +L   +I   +  +++ GKG K RIVP
Sbjct: 113 LMNAPDLSMAAGKRDRAILETLYASGLRVSELTNLDKPDIDFGEDYIKVLGKGGKERIVP 172

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           L    R+A+L Y       L    Q    LF    G+ L+    +  I +    + +   
Sbjct: 173 LGSKAREALLLYLQQGRVYLEAKGQASPALFLNKNGQRLSTRSIRNIINKYVETIAINQK 232

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRHSFATHLL+NG DLRS+Q +LGH +LSTTQIYT+++     + + +I+ QTHP
Sbjct: 233 VSPHTLRHSFATHLLNNGADLRSVQELLGHVKLSTTQIYTHLSR----EKIKDIHQQTHP 288


>gi|69248064|ref|ZP_00604609.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus
           faecium DO]
 gi|68194583|gb|EAN09074.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus
           faecium DO]
          Length = 284

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/296 (34%), Positives = 159/296 (53%), Gaps = 15/296 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           + IERGLS  T QSYE D  Q+L FL    E+KI   + + +    +  F+ K   +K  
Sbjct: 1   MNIERGLSANTRQSYERDLEQYLHFLQ---EQKIA--SWQDVDRFLVIRFLEKLHEEKKA 55

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             ++ R +S ++ F ++L++ +IT    + ++   KK+  LP  L     LT V+  L+ 
Sbjct: 56  TATVTRMISSLRRFHQFLRQERITDHDPMQHIDTPKKAQKLPSTLT----LTEVEK-LIE 110

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
               TK +  R+ AIL ++Y  G+R+SE + L   ++      ++  GKGDK RI+PL  
Sbjct: 111 APDTTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGKGDKERIIPLGD 170

Query: 205 SVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              + +  Y D   P  +    ++ +F    GK L+     + ++QL R  G+    T H
Sbjct: 171 YAIQWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVREAGIYKEVTPH 230

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           TLRHSFATHLL NG DLR++Q +LGH  +STTQIYT++  K     M ++Y Q  P
Sbjct: 231 TLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR----MTDVYKQHFP 282


>gi|291515062|emb|CBK64272.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 300

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 163/305 (53%), Gaps = 19/305 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFL----AFYTEEKITIQTIRQLSYTEIRAFI 75
           ++++ LE ER  S LT+++Y  D  QFL +L    A +  ++IT   IR+         +
Sbjct: 4   DFVRYLEAERRYSPLTVRNYRHDVEQFLAWLGVDDARFEPQRITTDDIREW-------IL 56

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            +  T ++   S+ R +S +++  ++L +        +  + +L+ S  LP  + E +  
Sbjct: 57  YRTETGRVSAASMNREISSLRALFRWLLRTGAVGRDVVHPIPSLRTSQRLPAFVPESRMN 116

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            +V      +     ++  RNS I+ LLY CGLR++E + +   +   D S+LRI+GKGD
Sbjct: 117 GIVSECECDSE---DFVRERNSLIILLLYTCGLRLAELVGIDRDDFSADFSSLRIRGKGD 173

Query: 196 KIRIVPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K RIVP+L  VR+ IL Y  L    ++ ++ +  LF   +GK ++     R +++     
Sbjct: 174 KERIVPMLEFVREKILHYIGLIERQNICISSEKALFLTHKGKRISRTAVYRTVQEELDRA 233

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+    + H LRH+FATHLL++G D+R IQ +LGH  L  TQ+YT+    N    + EIY
Sbjct: 234 GVQGKKSPHVLRHTFATHLLNSGADMREIQELLGHASLQATQVYTH----NSIARLREIY 289

Query: 315 DQTHP 319
            + HP
Sbjct: 290 AKAHP 294


>gi|138894733|ref|YP_001125186.1| site-specific tyrosine recombinase XerC [Geobacillus
           thermodenitrificans NG80-2]
 gi|134266246|gb|ABO66441.1| Integrase/recombinase (XerC/CodV family) [Geobacillus
           thermodenitrificans NG80-2]
          Length = 309

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/306 (33%), Positives = 159/306 (51%), Gaps = 21/306 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L+ L+IE+  S+ T+  Y  D  QFL F+    EE   I  + +++Y+++R +++K 
Sbjct: 18  QLFLEYLQIEKNYSQYTIVCYRRDIEQFLQFM---NEE--GIDELNEVAYSDVRLYLTKL 72

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q++  RS+ R +S ++SF K+L +   T E+        KK   +P  L  ++     
Sbjct: 73  YGQQLASRSVARKISSLRSFYKFLLREGWTAENPFALAALPKKEQKIPNFLYREEL---- 128

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L   +     +  RN+A+L LLY  G R+SE   +   ++    ST+ I GKG+K R
Sbjct: 129 -EALFRVNDGNTAVGQRNAALLELLYATGARVSECCHIRLSDLDFAASTVLIHGKGNKQR 187

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRY 253
            VP     R+A+  Y  +      L  +LP     LF   RG PL P   +  + ++   
Sbjct: 188 YVPFGRPAREALERY--IGGGRRELVGKLPADHRYLFVNARGNPLTPRGVRYILDRIVET 245

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L  + + H LRH+FATHLL+ G DLRS+Q +LGH  LS+TQ+YT+V      D +  I
Sbjct: 246 AALTQNISPHVLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTK----DRLRCI 301

Query: 314 YDQTHP 319
           Y Q HP
Sbjct: 302 YLQAHP 307


>gi|315038190|ref|YP_004031758.1| tyrosine recombinase XerD [Lactobacillus amylovorus GRL 1112]
 gi|312276323|gb|ADQ58963.1| tyrosine recombinase XerD [Lactobacillus amylovorus GRL 1112]
          Length = 301

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/312 (32%), Positives = 168/312 (53%), Gaps = 18/312 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL  +  ++L+  ++ERGLS  T+ +Y  D  ++L   +F  +E ++         +++ 
Sbjct: 5   ELQDQIDDYLRFSQVERGLSTNTISAYRQDLEEYL---SFIKKEGMSSWPT---EASDVD 58

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           AF++++R       S+ R +S ++ F ++L ++ I   + +L +   KK   LP AL+ +
Sbjct: 59  AFLARQRDLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSRE 118

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +      N LL      + +  R+ AIL  LY  G+R+SE ++L  Q+I +D   +R+ G
Sbjct: 119 EV-----NRLLEQPDVEQKLGLRDRAILETLYATGMRVSELINLELQDIHEDLGLIRVLG 173

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI---QLPLFRGIRGKPLNPGVFQRYIRQ 249
           KG K R++P+ P     I +Y       L L        LF   RG  L      + I++
Sbjct: 174 KGSKERLIPISPVALHWIDKYQKQVRDPLILKSGKNDEHLFLNNRGGKLTRQAIWQMIKK 233

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +  G+    T HTLRH+FATHLL NG DLR +Q ILGH  +STTQIYTN++ K+    
Sbjct: 234 YCQMAGITKDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKH---- 289

Query: 310 MMEIYDQTHPSI 321
           ++++Y +THP +
Sbjct: 290 ILQVYQKTHPRL 301


>gi|116629539|ref|YP_814711.1| integrase [Lactobacillus gasseri ATCC 33323]
 gi|238852689|ref|ZP_04643099.1| tyrosine recombinase XerD [Lactobacillus gasseri 202-4]
 gi|311110818|ref|ZP_07712215.1| tyrosine recombinase XerD [Lactobacillus gasseri MV-22]
 gi|116095121|gb|ABJ60273.1| tyrosine recombinase XerD subunit [Lactobacillus gasseri ATCC
           33323]
 gi|238834835|gb|EEQ27062.1| tyrosine recombinase XerD [Lactobacillus gasseri 202-4]
 gi|311065972|gb|EFQ46312.1| tyrosine recombinase XerD [Lactobacillus gasseri MV-22]
          Length = 302

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/305 (32%), Positives = 165/305 (54%), Gaps = 20/305 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L+  ++ERGLS  T+ SY  D  ++L +L    E      T  ++ Y  + AF++ +
Sbjct: 12  EDYLRFSQVERGLSPNTIISYRTDLEEYLDYLQDQNE------TSWEVDYLVVDAFLATQ 65

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + +     S+ R +S ++ F ++L ++ I     ++ + + K    LP AL+E++    V
Sbjct: 66  KDKGKATTSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEE----V 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D +L      T  +  R+ A+L +LY  G+R+SE ++L   +I  D   +R+ GKG K R
Sbjct: 122 DKLLAAPDTNTP-LGIRDRAMLEVLYATGMRVSELINLRTGDIHADLKIIRVLGKGSKER 180

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +VP+   V  + LE Y     D  +         +F    G  L      + I++  + +
Sbjct: 181 LVPI-TEVALSWLEKYQTDVRDAQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYCQLI 239

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+  + T HTLRH+FATHLL NG DLR +Q ILGH  ++TTQIYTN+  K+    ++E+Y
Sbjct: 240 GITKNVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKH----ILEVY 295

Query: 315 DQTHP 319
           +Q HP
Sbjct: 296 NQAHP 300


>gi|296117987|ref|ZP_06836570.1| tyrosine recombinase XerD [Corynebacterium ammoniagenes DSM 20306]
 gi|295969218|gb|EFG82460.1| tyrosine recombinase XerD [Corynebacterium ammoniagenes DSM 20306]
          Length = 322

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 100/318 (31%), Positives = 155/318 (48%), Gaps = 21/318 (6%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           PE+VS       Q WL +L +E+G SK T+ +Y  D ++++ +L         I T+ ++
Sbjct: 19  PELVSVA-----QGWLDHLAVEKGASKNTVSNYRRDLKRYVSWLT-----TANISTLSEV 68

Query: 67  SYTEIRAFISKRRTQKIGDRSLK-----RSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           S   + ++++  R    G + L      R+L   +   K+     +        +     
Sbjct: 69  SSHHVESYVADLRRGWDGQKPLSSASTSRALIVARGLHKFALSEGLIDVDVAAEVAPPSP 128

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              LP +L+  +   L+D+V          +D R+ A+L +LYG G R+SE L L   ++
Sbjct: 129 GKHLPDSLSIDEVTRLIDSVP--AGEVATAVDIRDKALLEMLYGTGARVSELLDLAVDDV 186

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
            D    L + GKG K R+VPL    R AI EY       L+      LF    GKPL+  
Sbjct: 187 ADSPEILTVTGKGSKQRLVPLGSHARTAIEEYLVRARPQLSRGKSHALFLNTLGKPLSRQ 246

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                I+Q  +  GL    + HTLRHSFATHLL  G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 247 SAWAVIQQAVQRAGLDKKVSPHTLRHSFATHLLQGGADVRTVQELLGHSSVTTTQIYTHV 306

Query: 302 NSKNGGDWMMEIYDQTHP 319
            +    D + E++   HP
Sbjct: 307 TA----DSLREVWRVAHP 320


>gi|292493801|ref|YP_003529240.1| tyrosine recombinase XerC [Nitrosococcus halophilus Nc4]
 gi|291582396|gb|ADE16853.1| tyrosine recombinase XerC [Nitrosococcus halophilus Nc4]
          Length = 300

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/318 (31%), Positives = 167/318 (52%), Gaps = 30/318 (9%)

Query: 16  KERQNWLQ----NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           +E+Q W+Q    +L+ ERGLS  T+ SY  D  +   F      ++  IQ   +L   ++
Sbjct: 3   EEQQAWIQRFLTHLQYERGLSGQTIVSYRRDLAKVATFC-----DRHGIQGWGELDAQKV 57

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           RA ++    + +  RS++R LS ++SF  YL++  +        +   K    LP AL+ 
Sbjct: 58  RALVAAHHQKGLSGRSIQRLLSALRSFSTYLQREGVVENHPAQGVSAPKGKRQLPHALDV 117

Query: 132 KQALTLV-----DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
            Q   L+     D +LL           R+ A+L L Y  GLR++E + L  + +  + +
Sbjct: 118 DQVAQLLKGEPSDQLLL-----------RDQAMLELFYSSGLRLAELVGLNLRELDLEAA 166

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            +R+ GKG K R VPL    + A+L +  +       N Q  +F   +G+ L+P   Q+ 
Sbjct: 167 LVRVVGKGAKTREVPLGRQAKAALLAWLPVREAWTPRN-QDAVFVSRQGRRLSPRGVQKR 225

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +R      GL ++   H LRH+FA+HLL + GDLR++Q +LGH  +STTQIYT+++ ++ 
Sbjct: 226 LRIWGLRQGLDVAIHPHRLRHAFASHLLESSGDLRAVQELLGHADISTTQIYTHLDFQH- 284

Query: 307 GDWMMEIYDQTHPSITQK 324
              + ++YDQTHP   +K
Sbjct: 285 ---LAKVYDQTHPRARKK 299


>gi|282852078|ref|ZP_06261436.1| tyrosine recombinase XerD [Lactobacillus gasseri 224-1]
 gi|282556838|gb|EFB62442.1| tyrosine recombinase XerD [Lactobacillus gasseri 224-1]
          Length = 296

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/305 (32%), Positives = 165/305 (54%), Gaps = 20/305 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L+  ++ERGLS  T+ SY  D  ++L +L    E      T  ++ Y  + AF++ +
Sbjct: 6   EDYLRFSQVERGLSPNTIISYRTDLEEYLDYLQDQNE------TSWEVDYLVVDAFLATQ 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + +     S+ R +S ++ F ++L ++ I     ++ + + K    LP AL+E++    V
Sbjct: 60  KDKGKATTSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEE----V 115

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D +L      T  +  R+ A+L +LY  G+R+SE ++L   +I  D   +R+ GKG K R
Sbjct: 116 DKLLAAPDTNTP-LGIRDRAMLEVLYATGMRVSELINLRTGDIHADLKIIRVLGKGSKER 174

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +VP+   V  + LE Y     D  +         +F    G  L      + I++  + +
Sbjct: 175 LVPI-TEVALSWLEKYQTDVRDAQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYCQLI 233

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+  + T HTLRH+FATHLL NG DLR +Q ILGH  ++TTQIYTN+  K+    ++E+Y
Sbjct: 234 GITKNVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKH----ILEVY 289

Query: 315 DQTHP 319
           +Q HP
Sbjct: 290 NQAHP 294


>gi|297205885|ref|ZP_06923280.1| tyrosine recombinase XerD [Lactobacillus jensenii JV-V16]
 gi|297149011|gb|EFH29309.1| tyrosine recombinase XerD [Lactobacillus jensenii JV-V16]
          Length = 300

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/331 (32%), Positives = 172/331 (51%), Gaps = 45/331 (13%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+ NNL ++  F         L+   +ERGLSK T+ SY+ D  QF+ +L    +EKIT 
Sbjct: 1   MKKNNLDQVADF---------LRFCSLERGLSKNTVDSYQLDLNQFIEYL---DKEKITD 48

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
                L    I ++++K+R +     ++ R ++ ++ F +YL ++ I     ++ +   K
Sbjct: 49  WPEDPLI---IDSYLAKQRDEGKKTSTISRGITTLRRFYRYLLRQHILVVDPLIQIDTPK 105

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +   LP AL++K+   L+    + T+        R+ AIL LLY  G+R+SE ++L   +
Sbjct: 106 QEKRLPLALSQKEVEQLLAQPDIKTT-----TGLRDRAILELLYATGMRVSELINLKEAD 160

Query: 181 IMDDQSTLRIQGKGDKIRIVPL-----------LPSVRK-AILEYYDLCPFDLNLNIQLP 228
           +  D   +R+ GKG K R+VP+           L +VR  A+L+    C F         
Sbjct: 161 LHTDLKIIRVLGKGSKERLVPVTDFALNWLDKYLKNVRDPALLKKGVACDF--------- 211

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LF   R   L      + I++  +   +    T HTLRH+FATHLL NG DLR +Q ILG
Sbjct: 212 LFLNNRAGQLTRQAVWQSIKKYSKLAKIDKDITPHTLRHTFATHLLENGADLRVVQEILG 271

Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           H  +STTQIYTN++ K+    + ++Y +THP
Sbjct: 272 HSDISTTQIYTNLSQKH----IFDVYQKTHP 298


>gi|254427826|ref|ZP_05041533.1| tyrosine recombinase XerC [Alcanivorax sp. DG881]
 gi|196193995|gb|EDX88954.1| tyrosine recombinase XerC [Alcanivorax sp. DG881]
          Length = 307

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 165/308 (53%), Gaps = 16/308 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L  ER LS  T+ SY+ D  +    L     + +T+  IR L+ T         R 
Sbjct: 15  FLTHLASERRLSPHTVSSYQRDLVEARKVLGTQPWDTLTVHDIRSLAAT-------LHRK 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            K G ++++R LS +++F +YL +  +  ++  +++R  K    LP+AL+  Q   L+D 
Sbjct: 68  GKSG-KTIQRMLSTLRTFFRYLMREGLARDNPAMDIRAPKSGKRLPKALDADQVSHLLDA 126

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                +H ++ +  R+ A++ LLY CGLR++E LSL   +I      L + GKG+K R +
Sbjct: 127 ----GTHSSEPLALRDQAMMELLYACGLRLAELLSLNLDSIDLRDGQLLVTGKGNKTRQL 182

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+      A+  +  + P  +    Q  LF    G+ L+P   Q+ +++     GL    
Sbjct: 183 PVGKPALTAVRRWLKVRPLLIKSGEQTALFISKNGRRLSPSSVQQRLKRHALERGLDDHL 242

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
             H LRHSFATHLL + GDLR++Q +LGH  L+TTQ+YT+++ ++    + ++YD  HP 
Sbjct: 243 HPHKLRHSFATHLLESSGDLRAVQELLGHADLATTQVYTHLDFQH----LAQVYDGAHPR 298

Query: 321 ITQKDKKN 328
             ++  ++
Sbjct: 299 AQRRKDED 306


>gi|227889862|ref|ZP_04007667.1| integrase-recombinase [Lactobacillus johnsonii ATCC 33200]
 gi|227849726|gb|EEJ59812.1| integrase-recombinase [Lactobacillus johnsonii ATCC 33200]
          Length = 296

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 167/308 (54%), Gaps = 26/308 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L+  ++ERGLS  T+ SY  D  ++L +L    E      T  ++ Y  + +F++ +
Sbjct: 6   EDYLRFSQVERGLSPNTIVSYRTDLEEYLSYLEDQNE------TSWEVDYLVVDSFLATQ 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + +     S+ R +S ++ F ++L ++ I     ++ + + K    LP AL+E++   L+
Sbjct: 60  KDKGKATTSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVTKLL 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D    +TS     +  R+ A+L +LY  G+R+SE ++L   +I  +   +R+ GKG K R
Sbjct: 120 DAPDTNTS-----LGIRDRAMLEVLYATGMRVSELINLRTGDIHSELKIIRVLGKGSKER 174

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-------LFRGIRGKPLNPGVFQRYIRQLR 251
           +VP    + +  L + +    D+  N  L        +F    G  L      + I++  
Sbjct: 175 LVP----ITEVALSWLEKYQKDVRENQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYC 230

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           + +G+  + T HTLRH+FATHLL NG DLR +Q ILGH  ++TTQIYTN+  K+    ++
Sbjct: 231 QLIGITKNVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKH----IL 286

Query: 312 EIYDQTHP 319
           E+Y+Q HP
Sbjct: 287 EVYNQAHP 294


>gi|329667457|gb|AEB93405.1| integrase/recombinase XerD [Lactobacillus johnsonii DPC 6026]
          Length = 296

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 166/308 (53%), Gaps = 26/308 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L+  ++ERGLS  T+ SY  D  ++L +L    E      T  ++ Y  + AF++ +
Sbjct: 6   EDYLRFSQVERGLSPNTIVSYRTDLEEYLSYLEDQNE------TSWEVDYLVVDAFLATQ 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + +     S+ R +S ++ F ++L ++ I     ++ + + K    LP AL+E++   L+
Sbjct: 60  KDKGKATTSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVTKLL 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D    +T      +  R+ A+L +LY  G+R+SE ++L   +I  +   +R+ GKG K R
Sbjct: 120 DAPDTNTR-----LGIRDRAMLEVLYATGMRVSELINLRTGDIHSELKIIRVLGKGSKER 174

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-------LFRGIRGKPLNPGVFQRYIRQLR 251
           +VP    V +  L + +    D+  N  L        +F    G  L      + I++  
Sbjct: 175 LVP----VTEVALSWLEKYQKDVRENQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYC 230

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           + +G+  + T HTLRH+FATHLL NG DLR +Q ILGH  ++TTQIYTN+  K+    ++
Sbjct: 231 QLIGITKNVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKH----IL 286

Query: 312 EIYDQTHP 319
           E+Y+Q HP
Sbjct: 287 EVYNQAHP 294


>gi|256851002|ref|ZP_05556391.1| tyrosine recombinase XerD [Lactobacillus jensenii 27-2-CHN]
 gi|260661214|ref|ZP_05862128.1| tyrosine recombinase XerD [Lactobacillus jensenii 115-3-CHN]
 gi|282932045|ref|ZP_06337503.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1]
 gi|256616064|gb|EEU21252.1| tyrosine recombinase XerD [Lactobacillus jensenii 27-2-CHN]
 gi|260548151|gb|EEX24127.1| tyrosine recombinase XerD [Lactobacillus jensenii 115-3-CHN]
 gi|281303812|gb|EFA95956.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1]
          Length = 300

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/331 (32%), Positives = 172/331 (51%), Gaps = 45/331 (13%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+ NNL ++  F         L+   +ERGLSK T+ SY+ D  QF+ +L    +EKIT 
Sbjct: 1   MKKNNLDQVADF---------LRFCSLERGLSKNTVDSYQLDLNQFIEYL---DKEKITD 48

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
                L    I ++++K+R +     ++ R ++ ++ F +YL ++ I     ++ +   K
Sbjct: 49  WPEDPLI---IDSYLAKQRDEGKKTSTISRGITTLRRFYRYLLRQHILVVDPLIQIDTPK 105

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +   LP AL++K+   L+    + T+        R+ AIL LLY  G+R+SE ++L   +
Sbjct: 106 QEKRLPLALSQKEVEQLLAQPDIKTT-----TGLRDRAILELLYATGMRVSELINLKEAD 160

Query: 181 IMDDQSTLRIQGKGDKIRIVPL-----------LPSVRK-AILEYYDLCPFDLNLNIQLP 228
           +  D   +R+ GKG K R+VP+           L +VR  A+L+    C F         
Sbjct: 161 LHTDLKIIRVLGKGSKERLVPVTDFALSWLDKYLKNVRDPALLKKGVACDF--------- 211

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LF   R   L      + I++  +   +    T HTLRH+FATHLL NG DLR +Q ILG
Sbjct: 212 LFLNNRAGQLTRQAVWQSIKKYSKLAKIDKDITPHTLRHTFATHLLENGADLRVVQEILG 271

Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           H  +STTQIYTN++ K+    + ++Y +THP
Sbjct: 272 HSDISTTQIYTNLSQKH----IFDVYQKTHP 298


>gi|196247646|ref|ZP_03146348.1| tyrosine recombinase XerC [Geobacillus sp. G11MC16]
 gi|196212430|gb|EDY07187.1| tyrosine recombinase XerC [Geobacillus sp. G11MC16]
          Length = 300

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/306 (33%), Positives = 158/306 (51%), Gaps = 21/306 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L+ L+IE+  S+ T+  Y  D  QFL F+    EE   I  + +++Y+++R +++K 
Sbjct: 9   QLFLEYLQIEKNYSQYTIVCYRRDIEQFLQFM---NEE--GIDELNEVAYSDVRLYLTKL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q++  RS+ R +S ++SF K+L +     E+        KK   +P  L  ++     
Sbjct: 64  YGQQLASRSVARKISSLRSFYKFLLREGWAAENPFALAALPKKEQKIPNFLYREEL---- 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L   +     +  RN+A+L LLY  G R+SE   +   ++    ST+ I GKG+K R
Sbjct: 120 -EALFRVNDGNTAVGQRNAALLELLYATGARVSECCHIRLSDLDFAASTVLIHGKGNKQR 178

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRY 253
            VP     R+A+  Y  +      L  +LP     LF   RG PL P   +  + ++   
Sbjct: 179 YVPFGRPAREALERY--IGGGRRELVGKLPADHRYLFVNARGNPLTPRGVRYILDRIVET 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L  + + H LRH+FATHLL+ G DLRS+Q +LGH  LS+TQ+YT+V      D +  I
Sbjct: 237 AALTQNISPHVLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTK----DRLRRI 292

Query: 314 YDQTHP 319
           Y Q HP
Sbjct: 293 YLQAHP 298


>gi|296133169|ref|YP_003640416.1| tyrosine recombinase XerD [Thermincola sp. JR]
 gi|296031747|gb|ADG82515.1| tyrosine recombinase XerD [Thermincola potens JR]
          Length = 295

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/302 (32%), Positives = 159/302 (52%), Gaps = 15/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + ++  L +ERGL++ TL+SY  D  ++  FL+     K  I      + T + A++   
Sbjct: 6   EEFIYYLTVERGLAENTLESYARDLERYSAFLS-----KHGITKFEATNKTNVMAYLLHL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + Q     ++ R L+ +KSF +YL + K   +   +N+ + K    LPR L+ ++     
Sbjct: 61  QKQGKATSTISRHLASLKSFYQYLLREKHIEQDPTVNLESPKLQKKLPRVLSVEEV---- 116

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             +LL+     +   +R+ A+L LLY  G+R+SE +SL   ++  +   +R  GKG K R
Sbjct: 117 -EILLNQPRLNEPAGSRDKAMLELLYATGIRVSELISLDLDHVNLEMGYVRCFGKGSKER 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           I+P+    +K + EY       L     +  LF    G+ +    F + I++  R  G+ 
Sbjct: 176 IIPIGSLAKKYVEEYLHRGRVRLIKSKGETALFVNHHGRRMTRQGFWKIIKKYAREAGIK 235

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T HTLRHSFATHLL NG DLRS+Q +LGH  ++TTQIYT++        + E+Y +T
Sbjct: 236 KDITPHTLRHSFATHLLENGADLRSVQEMLGHADITTTQIYTHLTRGR----LREVYSKT 291

Query: 318 HP 319
           HP
Sbjct: 292 HP 293


>gi|325956642|ref|YP_004292054.1| tyrosine recombinase xerD [Lactobacillus acidophilus 30SC]
 gi|325333207|gb|ADZ07115.1| tyrosine recombinase xerD [Lactobacillus acidophilus 30SC]
          Length = 301

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/312 (32%), Positives = 168/312 (53%), Gaps = 18/312 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL  +  ++L+  ++ERGLS  T+ +Y  D  ++L   +F  +E ++         +++ 
Sbjct: 5   ELQDQIDDYLRFSQVERGLSTNTISAYRQDLEEYL---SFIKKEGMSSWPT---EASDVD 58

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           AF++++R       S+ R +S ++ F ++L ++ I   + +L +   KK   LP AL+ +
Sbjct: 59  AFLARQRDLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSGE 118

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +      N LL      + +  R+ AIL  LY  G+R+SE ++L  Q+I +D   +R+ G
Sbjct: 119 EV-----NRLLEQPDVEQKLGLRDRAILETLYATGMRVSELINLELQDIHEDLGLIRVLG 173

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI---QLPLFRGIRGKPLNPGVFQRYIRQ 249
           KG K R++P+ P     I +Y       L L        LF   RG  L      + I++
Sbjct: 174 KGSKERLIPISPVALHWIDKYQKQVRDPLILKSGKNDEHLFLNNRGGKLTRQAIWQMIKK 233

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +  G+    T HTLRH+FATHLL NG DLR +Q ILGH  +STTQIYTN++ K+    
Sbjct: 234 YCQMAGITKDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKH---- 289

Query: 310 MMEIYDQTHPSI 321
           ++++Y +THP +
Sbjct: 290 ILQVYQKTHPRL 301


>gi|219669732|ref|YP_002460167.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
 gi|219539992|gb|ACL21731.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
          Length = 298

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/288 (34%), Positives = 152/288 (52%), Gaps = 14/288 (4%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ TL +Y  D  QF +F A    E+    T+ Q+    +R+F+ +   + +  +S+ R 
Sbjct: 20  SQHTLMAYHKDLIQFFVFAARELGEEPEKVTVDQVDIYIVRSFLGEMTDRGLERKSMARK 79

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           LS +++F K+L +  I  ++ I  +   K    LP  L+ ++      + L+ T      
Sbjct: 80  LSALRAFFKFLCREGILQKNPIQRIATPKLGRKLPHFLSLEEL-----DRLIRTPDCATL 134

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           + AR+  IL LLYG GLR+SE   L  Q+I    S LR++GKG+K RIVPL     +A  
Sbjct: 135 LGARDQVILELLYGSGLRVSELADLNRQDIDAGSSLLRVRGKGNKERIVPLTNYALEAAR 194

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           +Y      ++  + Q  L    +G  L+    +R +  L    GL      H LRHSFAT
Sbjct: 195 QY-----LEMREDKQEALLLNYQGTRLSVRSIRRILDGLALEAGLSQHLHPHMLRHSFAT 249

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HLL  G DLRS+Q +LGH +LS+TQIYT++      + + E+Y+Q HP
Sbjct: 250 HLLDGGADLRSVQELLGHAKLSSTQIYTHLTK----ERLREVYEQNHP 293


>gi|315640591|ref|ZP_07895697.1| integrase/recombinase XerD [Enterococcus italicus DSM 15952]
 gi|315483619|gb|EFU74109.1| integrase/recombinase XerD [Enterococcus italicus DSM 15952]
          Length = 296

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/304 (34%), Positives = 163/304 (53%), Gaps = 18/304 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  L IERGLS  T  SYE D +Q+  F+     +   I + +Q+    I AF+ + 
Sbjct: 6   EDYLHFLTIERGLSLNTRSSYERDLKQYYTFV-----QTKQITSWQQIDRYTILAFLEQL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + +     ++ R +S ++ F ++L++ + T    + ++   KK   LP  L+ K+   L+
Sbjct: 61  KKENKSTATITRMISSLRRFHQFLRQERHTDHDPMQHIDTPKKVQKLPDTLSLKEVERLI 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D     T    K +  R+ AIL ++Y  GLR+SE + L   +I  + + L+  GKGDK R
Sbjct: 121 D-----TPDTRKILGIRDRAILEVMYATGLRVSELIQLQLSDIHLNMALLQTIGKGDKER 175

Query: 199 IVPLLPSVRKAILEYY--DLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           IVPL   +    LE Y  D  P  ++    +  LF    GK L      + ++++ R  G
Sbjct: 176 IVPL-GDMAIHWLEVYLSDARPILVSKQPNETALFVNSHGKKLTRQGIWKNLKEIVRAAG 234

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT++  K     M ++Y 
Sbjct: 235 IHKTVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR----MTDVYK 290

Query: 316 QTHP 319
           Q  P
Sbjct: 291 QYFP 294


>gi|239996020|ref|ZP_04716544.1| tyrosine recombinase [Alteromonas macleodii ATCC 27126]
          Length = 308

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/285 (33%), Positives = 153/285 (53%), Gaps = 10/285 (3%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +++ L +E+GLS  T QSY  D  +  IF      + I + T  QL     + +++ R 
Sbjct: 21  GFIEMLWLEKGLSDHTQQSYRTDLTKLAIFSNNQGVKDIAVLTTEQL-----QDYLAYRH 75

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +  RS +R+LS I++F  +L  +++  +S +  + N K   +LP +L+E+Q   L++
Sbjct: 76  DKGLSTRSTQRALSAIRAFFVFLISKQVRVDSPVSALSNPKTPKALPSSLSEQQVEDLLN 135

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             L         I+ R+ ++L +LY  GLR+SE + LT   I   Q  +R+ GKG+K R+
Sbjct: 136 APLTDDP-----IECRDKSMLEVLYATGLRVSELIGLTMDQISLQQGVVRVVGKGNKERL 190

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPL     + +L Y       L       +F   RG+ +    F   I+      G+   
Sbjct: 191 VPLGEDAIEWLLTYIKTARPILASKASDVVFLSKRGQKMTRQTFWHRIKYYAVKAGIEQH 250

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++
Sbjct: 251 LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATE 295


>gi|189423412|ref|YP_001950589.1| tyrosine recombinase XerC [Geobacter lovleyi SZ]
 gi|254799343|sp|B3E1H7|XERC_GEOLS RecName: Full=Tyrosine recombinase xerC
 gi|189419671|gb|ACD94069.1| tyrosine recombinase XerC [Geobacter lovleyi SZ]
          Length = 317

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 110/325 (33%), Positives = 166/325 (51%), Gaps = 23/325 (7%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL  +   +L+ L  +R  S  T+ +Y  D   F  F+       ++ +T+  L      
Sbjct: 3   ELAHQVARFLEFLATQRSASPHTIAAYRNDLNGFSSFVRSERGNTVSTKTVDHLLLRLYL 62

Query: 73  ----AFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPR 127
                 + K++       S+ R L+ +++F  +L + R++      L +   K+   LP 
Sbjct: 63  ASLNGGLDKQQRAGYAKSSIGRKLAAVRAFFGWLVRTRQLEVNPAEL-IATPKREQRLPF 121

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            LN  Q +TL++    HT  E     AR++AIL LLY  GLR+SE   L   ++      
Sbjct: 122 HLNIDQTVTLIE-APGHTGQEQPTF-ARDTAILELLYSSGLRVSELTGLAVADLDRAAGM 179

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           +R+QGKG K RIVP+  +  +A+ +Y         L    PLF G RG  +N    +R +
Sbjct: 180 VRVQGKGGKERIVPVGSAALEALEQY---LAGRGQLADDAPLFLGCRGARIN----RRTV 232

Query: 248 RQL--RRYLGLPL--STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            QL  R   G+P   S + HTLRH+FATH+L  G DLRSIQ +LGH  LSTTQ YT+V  
Sbjct: 233 AQLVKRWASGIPAFRSISPHTLRHTFATHMLEGGADLRSIQELLGHSSLSTTQKYTHV-- 290

Query: 304 KNGGDWMMEIYDQTHPSITQKDKKN 328
             G D ++E+YD+ HP   + D++N
Sbjct: 291 --GLDRLLEVYDKAHPRARETDQQN 313


>gi|42519008|ref|NP_964938.1| integrase/recombinase XerD [Lactobacillus johnsonii NCC 533]
 gi|41583295|gb|AAS08904.1| integrase/recombinase XerD [Lactobacillus johnsonii NCC 533]
          Length = 296

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 166/308 (53%), Gaps = 26/308 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L+  ++ERGLS  T+ SY  D  ++L +L    E      T  ++ Y  + AF++ +
Sbjct: 6   EDYLRFSQVERGLSPNTIVSYRTDLEEYLSYLEDQNE------TSWEVDYLVVDAFLATQ 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + +     S+ R +S ++ F ++L ++ I     ++ + + K    LP AL+E++   L+
Sbjct: 60  KDKGKATTSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVTKLL 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D    +T      +  R+ A+L +LY  G+R+SE ++L   +I  +   +R+ GKG K R
Sbjct: 120 DAPDTNTR-----LGIRDRAMLEVLYATGMRVSELINLRTGDIHSELKIIRVLGKGSKER 174

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-------LFRGIRGKPLNPGVFQRYIRQLR 251
           +VP    + +  L + +    D+  N  L        +F    G  L      + I++  
Sbjct: 175 LVP----ITEVALSWLEKYQKDVRENQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYC 230

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           + +G+  + T HTLRH+FATHLL NG DLR +Q ILGH  ++TTQIYTN+  K+    ++
Sbjct: 231 QLIGITKNVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKH----IL 286

Query: 312 EIYDQTHP 319
           E+Y+Q HP
Sbjct: 287 EVYNQAHP 294


>gi|118578727|ref|YP_899977.1| tyrosine recombinase XerC [Pelobacter propionicus DSM 2379]
 gi|166918893|sp|A1AKP9|XERC_PELPD RecName: Full=Tyrosine recombinase xerC
 gi|118501437|gb|ABK97919.1| tyrosine recombinase XerC [Pelobacter propionicus DSM 2379]
          Length = 302

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 108/306 (35%), Positives = 156/306 (50%), Gaps = 16/306 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L+++ + +  +LE ER LS  TL +Y+ D RQF  F+A    +  T + +  L    +R 
Sbjct: 4   LMEQIRAFRLHLETERNLSPHTLAAYDRDLRQFAAFVAAEMGDSATAEDVDHLL---LRR 60

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++++  TQ I   S  R L+ I+SF ++L +    + +    +   K+   LP  L+  Q
Sbjct: 61  YLAQLGTQ-IRKSSQGRKLAAIRSFYRHLLRLGSVSRNPAELIATPKREQRLPFHLDIDQ 119

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           A       L+ T  E +    R+ AIL  LY  GLR+SE   L  ++I      LR+ GK
Sbjct: 120 A-----TALMETPTEEENYGLRDRAILETLYSSGLRVSELTGLAIRDINLAGGMLRVMGK 174

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K RIVPL     +AI EY D            PLF   RG  +N     R +      
Sbjct: 175 GGKERIVPLGSRAVRAIQEYLDSRG---GGTATAPLFLNSRGDRINRRSVARIVDAHVHE 231

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +      + HTLRH+FATH+L  G DLR+IQ +LGH  LSTTQ YT+V+     D +ME+
Sbjct: 232 IAAFKHISPHTLRHTFATHMLEGGADLRAIQELLGHASLSTTQKYTHVSL----DRLMEV 287

Query: 314 YDQTHP 319
           YD+ HP
Sbjct: 288 YDKAHP 293


>gi|300113125|ref|YP_003759700.1| tyrosine recombinase XerC [Nitrosococcus watsonii C-113]
 gi|299539062|gb|ADJ27379.1| tyrosine recombinase XerC [Nitrosococcus watsonii C-113]
          Length = 300

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/318 (32%), Positives = 168/318 (52%), Gaps = 30/318 (9%)

Query: 16  KERQNWLQ----NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           +ERQ W+Q    +L+ ERGLS  T+ SY  D  + + F       +  I   + L   ++
Sbjct: 3   EERQIWIQKFLLHLQYERGLSPQTVVSYRRDLAKVMAFCG-----RNGIGNWQALDAQKV 57

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           RA ++      +  RS++R LS ++SF  YL++  I   +    +   +   +LP  L+ 
Sbjct: 58  RALVAAYHQTGLSGRSIQRLLSALRSFYVYLQRENIVDHNPAQGISAPRGKRALPPTLDV 117

Query: 132 KQALTLVD-----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
            QA  L++     ++LL           R+ AIL L Y  GLR++E + L    +  D +
Sbjct: 118 DQAAQLLNTKPCGDLLL-----------RDQAILELFYSSGLRLAELVGLNLSALDLDTA 166

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            +R+ GKG K R VPL    + A+L +  +    ++ + Q  +F   RG+ L+P   Q+ 
Sbjct: 167 LVRVVGKGAKTREVPLGRRAKAALLAWLPIRAGWISQS-QEAVFVTRRGRRLSPRAVQKR 225

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +R      G  ++   H LRH+FA+HLL + GDLR++Q +LGH  +STTQIYT+++ ++ 
Sbjct: 226 LRLWGLRQGFDVAIHPHRLRHAFASHLLESSGDLRAVQELLGHADISTTQIYTHLDFQH- 284

Query: 307 GDWMMEIYDQTHPSITQK 324
              + +IYDQTHP   +K
Sbjct: 285 ---LAKIYDQTHPRARKK 299


>gi|329894263|ref|ZP_08270149.1| Site-specific recombinase XerD [gamma proteobacterium IMCC3088]
 gi|328923194|gb|EGG30516.1| Site-specific recombinase XerD [gamma proteobacterium IMCC3088]
          Length = 298

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/302 (31%), Positives = 162/302 (53%), Gaps = 14/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + ++  L +ERGLS  +L +Y  D   +  +L    ++ +  + +RQ    +++ ++  R
Sbjct: 8   EQFIDALWMERGLSDNSLSAYRTDLAHYQAWL----DKAVAGRQLRQADGADLQRYLGLR 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q    RS  R LS ++SF +Y  ++         ++ + K   +LP++L+E+     V
Sbjct: 64  LKQGRSPRSTARLLSCLRSFYRYALRQNWCVTDPTADVESPKMGRALPKSLSEQD----V 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D +L   + E+  I+ R+ A+L LLY CGLR+SE + LT  NI  +Q  +R+ GKG K R
Sbjct: 120 DALLSAPNVESP-IELRDKAMLELLYACGLRVSELVGLTQLNISVNQGVVRVLGKGSKER 178

Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+       +  Y  +  P  +       LF  IRG+ +    F   I+   +  G+ 
Sbjct: 179 LVPMGEEALDWLTRYLREGRPLIVEKKANDWLFPSIRGQGMTRQTFWHRIKLYAKRAGIK 238

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + HTLRH+FATHLL++G DLR +Q +LGH  L+TTQIYT+V  +     + +++ + 
Sbjct: 239 APLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLTTTQIYTHVAQQR----LQDLHAKH 294

Query: 318 HP 319
           HP
Sbjct: 295 HP 296


>gi|224370397|ref|YP_002604561.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2]
 gi|223693114|gb|ACN16397.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2]
          Length = 295

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 97/301 (32%), Positives = 161/301 (53%), Gaps = 17/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++ +L +ERGL++ +L SY  D   F  FL     E   I  + Q+    I A++     
Sbjct: 8   YMAHLTLERGLAQNSLTSYAMDLATFADFL-----ETNQISALDQVDTVVILAWLVHLEA 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQALTLVD 139
           + +  RS  R L  ++ F ++L    +T  SN L + ++ K+ + LPR L++ Q      
Sbjct: 63  KGLSPRSRARHLIAVRGFYRFLALENLT-RSNPLRLIDIPKAGTRLPRFLSQDQV----- 116

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL     T     RN+A+L +LYG GLR+SE + L  + +      +R+ GKG + RI
Sbjct: 117 TALLEMPDRTTHRGLRNAAMLEILYGAGLRVSELVGLKTEQVDLVACFVRLFGKGSRERI 176

Query: 200 VPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP     R+  +E+ +   P+ L  N    LF    G P+    F + +++     G+ +
Sbjct: 177 VPFGSHARQRTMEWLEWGRPWMLKKNASRYLFVARAGNPMTRQGFWKLLKKYALGAGISI 236

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HTLRHSFATHLL  G DLRS+Q++LGH  +++TQIYT+V+ +    ++++++ + H
Sbjct: 237 KVSPHTLRHSFATHLLEGGADLRSVQTMLGHADIASTQIYTHVSRQ----YLVDMHKKYH 292

Query: 319 P 319
           P
Sbjct: 293 P 293


>gi|326692503|ref|ZP_08229508.1| tyrosine recombinase XerD [Leuconostoc argentinum KCTC 3773]
          Length = 298

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 97/301 (32%), Positives = 160/301 (53%), Gaps = 16/301 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  + IERGLS  T+ SY  D  QF    A+ T EK+T++ +    +  + A++++ R
Sbjct: 11  DYLHYIRIERGLSDNTINSYRQDLTQFG---AYLTAEKLTLEAV---DHVVVLAWLNQLR 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                + S+ R ++ ++ F  YL + KI   + + +++  KK+  LP  L+  +      
Sbjct: 65  LVGKSNNSVIRMVTSLRKFFGYLAQEKIVLPNPMRDIQPPKKATHLPAVLSVAEI----- 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           + LL    +T  +D RN  ++ ++Y  GLR+SE ++L   ++      ++  GKGDK RI
Sbjct: 120 DALLAVPTDTTPLDIRNRTLIEVMYATGLRVSELVNLKLSDLHLQLGLIQTIGKGDKERI 179

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +P+       +  Y+      L      P +F   RG  L      + I++L    G+  
Sbjct: 180 IPIGEVAADWLTRYFASSRLALLKGKASPYVFLNDRGGQLTRQGVWKIIKKLVVEAGITK 239

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HTLRHSFATH+L NG DLR +Q +LGH  +STTQIYT+++ K     + E+YDQ H
Sbjct: 240 DVSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKR----LSEVYDQYH 295

Query: 319 P 319
           P
Sbjct: 296 P 296


>gi|221195834|ref|ZP_03568887.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626]
 gi|221184308|gb|EEE16702.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626]
          Length = 311

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 97/318 (30%), Positives = 167/318 (52%), Gaps = 16/318 (5%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            +L++  + +L  + +ERGLS  TL +YE D   +  +L+        I     ++   +
Sbjct: 1   MDLVQALKEFLAYVAVERGLSHNTLDAYERDLNGYSDWLS-----SCGIHNPCAVTQQIL 55

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
             +I++ R   +   S++R  + I++F ++L   +I   S   ++ +  +   LP  ++ 
Sbjct: 56  ETYIAELREIGLAPASVERHTAAIRNFHRFLVAEQICATSPADDLSSTARPLRLPDVISR 115

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           ++A  L+D        E      R+ AIL +LYGCGLR+SE   L  + ++ D+  LR+ 
Sbjct: 116 EKAAELLDQPF-----ERSPRGIRDKAILEVLYGCGLRVSEVSGLEVRGVLLDEELLRVF 170

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQL 250
           GKG K R+VP+  + ++A+ EY +       ++ Q P +F   RG  L+       +   
Sbjct: 171 GKGSKERVVPIFGTAQEALREYLEGARGAFLIHGQSPYVFLNRRGGRLSRQWIHTSVAAY 230

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            R +G+  +   HTLRHSFATHLL  G DLRS+Q +LGH  +STTQ+YT+V+  +    +
Sbjct: 231 GRAVGIE-NLHPHTLRHSFATHLLEGGADLRSVQELLGHVDISTTQLYTHVDRSH----V 285

Query: 311 MEIYDQTHPSITQKDKKN 328
            E+Y   HP   +  +K+
Sbjct: 286 REVYLSAHPRAHEAFRKD 303


>gi|206889353|ref|YP_002249196.1| tyrosine recombinase XerC [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|254799359|sp|B5YFZ8|XERC_THEYD RecName: Full=Tyrosine recombinase xerC
 gi|206741291|gb|ACI20348.1| tyrosine recombinase XerC [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 301

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 96/305 (31%), Positives = 165/305 (54%), Gaps = 24/305 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N+L ++++++G S  TL++Y+ D  +F  F     E         ++    IR FIS++ 
Sbjct: 10  NFLNHIKLQKGDSSHTLRAYKNDLEEFFNFAKVEPE---------KVEPIVIRGFISEQI 60

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +     ++ R LS ++SF  YL        +    + ++K   +LP+ L    A  LV+
Sbjct: 61  LKGKSKTTVARKLSTLRSFFSYLYSEGFIKINPARVVSSVKIKRALPKFLTVDDAFKLVE 120

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                   E K+   R+ AIL L Y  G+R+SE   L  +++   +  ++++GKG K RI
Sbjct: 121 -----APSEDKFTVQRDKAILELFYSSGIRVSELCGLNLEDLDLKEGLIKVRGKGKKERI 175

Query: 200 VPLLPSVRKAILEYYDLCPF-----DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           VP+    ++A+ +Y  +         L+L+ + PLF   RG+ ++    +R + +  +++
Sbjct: 176 VPVGQKAKEALKKYLAIRQILRIKKKLSLD-ETPLFINNRGQRISDRQVRRIVEKYAKFI 234

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+      HTLRH+FA+HLL  G DLR IQ +LGH  LSTTQIYT+V+ K+    ++E+Y
Sbjct: 235 GVLEKIGPHTLRHTFASHLLMEGADLRVIQELLGHASLSTTQIYTHVDLKH----LIEVY 290

Query: 315 DQTHP 319
           D++HP
Sbjct: 291 DKSHP 295


>gi|90961911|ref|YP_535827.1| integrase/recombinase XerD/RipX family [Lactobacillus salivarius
           UCC118]
 gi|90821105|gb|ABD99744.1| Integrase/recombinase, XerD/RipX family [Lactobacillus salivarius
           UCC118]
          Length = 297

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 103/302 (34%), Positives = 166/302 (54%), Gaps = 17/302 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L++ERGLS+ T+ SY  D   F +FL +  E +I   + +Q++   I  ++   +
Sbjct: 9   DYLHYLKVERGLSENTINSYGID---FKLFLEYLRENEIP--SFKQVNKEVIVNYMQSEK 63

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                + S+ RS+S ++ F +YL + KI  +  +L +   KK   LP+ L +++      
Sbjct: 64  NNNKANSSILRSVSSLRKFFQYLAQEKIIEKDPMLLIDTPKKKQHLPQVLTKEEV----- 118

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL + +  + +  R+ A+L L+Y  GLRISE ++L  +++     TL+  GKG K RI
Sbjct: 119 EKLLRSPNTGQVLGLRDRAMLELMYATGLRISEIINLKLEDLHLTMGTLQTLGKGHKERI 178

Query: 200 VPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYLGLP 257
           VP+     K +  Y +   P  L       LF    G  L   GV++    ++R+  G+ 
Sbjct: 179 VPVGDEAIKWVNRYLEEARPKLLKQKRSNYLFLNFHGNNLTRQGVWKNLKAEVRK-AGIQ 237

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + T HTLRHSFATH+L NG DLR +Q +LGH  +STTQIYT++++K   D    IY++ 
Sbjct: 238 KNITPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHLSNKQLAD----IYNRA 293

Query: 318 HP 319
           HP
Sbjct: 294 HP 295


>gi|300812172|ref|ZP_07092616.1| tyrosine recombinase XerD [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496857|gb|EFK31935.1| tyrosine recombinase XerD [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 301

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 102/320 (31%), Positives = 168/320 (52%), Gaps = 35/320 (10%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L ++  ++L+  +IERGLS  T+ +Y+ D    L FLAF  EE++       L   EI 
Sbjct: 6   KLAEQINDYLRYSQIERGLSPNTIAAYKQD---LLEFLAFVKEEQMPAWP---LEAVEID 59

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           AF++K R     + S+ R +S +  F ++L ++++     +  +   K+   +P AL E 
Sbjct: 60  AFLAKERDLGKANSSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEA 119

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L++   L T      +  R+ A++ LLY  G+R+SEA++L   ++  D   +++ G
Sbjct: 120 EVGKLLEQPDLTTD-----LGIRDRALVELLYATGMRVSEAVNLQLADVHADLQLIKVLG 174

Query: 193 KGDKIRIVPL-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
           KG K R++P+           LP   + +L+      +         LF   RG  L   
Sbjct: 175 KGSKERLIPVSALALDWIKRYLPVRDQQLLKRGKSSDY---------LFLNSRGGQLTRQ 225

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              + I++  +  G+    T HTLRHSFATHLL +G DLR +Q ILGH  +STTQIYTN+
Sbjct: 226 AVWQKIKKYCQQAGIAKDVTPHTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYTNL 285

Query: 302 NSKNGGDWMMEIYDQTHPSI 321
             K+    ++++Y +THP I
Sbjct: 286 TQKH----ILDVYQKTHPRI 301


>gi|268319602|ref|YP_003293258.1| tyrosine recombinase xerD [Lactobacillus johnsonii FI9785]
 gi|262397977|emb|CAX66991.1| tyrosine recombinase xerD [Lactobacillus johnsonii FI9785]
          Length = 302

 Score =  149 bits (376), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 94/308 (30%), Positives = 166/308 (53%), Gaps = 26/308 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L+  ++ERGLS  T+ SY  D  ++L +L    E+        ++ Y  + AF++ +
Sbjct: 12  EDYLRFSQVERGLSPNTIVSYRTDLEEYLSYLEDQNEKSW------EVDYLVVDAFLATQ 65

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + +     S+ R +S ++ F ++L ++ I     ++ + + K    LP AL+E++   L+
Sbjct: 66  KDKGKATTSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVTKLL 125

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D    +T      +  R+ A+L +LY  G+R+SE ++L   +I  +   +R+ GKG K R
Sbjct: 126 DAPDTNTR-----LGIRDRAMLEVLYATGMRVSELINLRTGDIHSELKIIRVLGKGSKER 180

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-------LFRGIRGKPLNPGVFQRYIRQLR 251
           +VP    + +  L + +    D+  N  L        +F    G  L      + I++  
Sbjct: 181 LVP----ITEVALSWLEKYQKDVRENQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYC 236

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           + +G+  + T HTLRH+FATHLL NG DLR +Q ILGH  ++TTQIYTN+  K+    ++
Sbjct: 237 QLIGITKNVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKH----IL 292

Query: 312 EIYDQTHP 319
           E+Y+Q HP
Sbjct: 293 EVYNQAHP 300


>gi|329895691|ref|ZP_08271114.1| site-specific tyrosine recombinase XerC [gamma proteobacterium
           IMCC3088]
 gi|328922209|gb|EGG29563.1| site-specific tyrosine recombinase XerC [gamma proteobacterium
           IMCC3088]
          Length = 306

 Score =  149 bits (376), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 91/289 (31%), Positives = 153/289 (52%), Gaps = 15/289 (5%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           LS  TL+ Y+ D   F+  L     E      I  L    +R++ +  R + +   S+ R
Sbjct: 24  LSAHTLKHYQRDIDSFVAQL-----EPSDADNIHSLKEYHVRSWANSLRRKGLAPASIAR 78

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            LS ++S+ ++  KR   + +    +R  K++  LP+A++  Q    ++  L+  S    
Sbjct: 79  HLSSVRSWFQFCAKRFGLSHNPAAGVRAPKQARKLPKAMDADQ----INQCLVAPSESD- 133

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
            +D R+ A+  LLY CGLR+SE  SLT   I   Q  + + GKG+K R +P+      A+
Sbjct: 134 -LDTRDLAMAELLYSCGLRLSELQSLTLAQIDIQQRLVTVTGKGNKTRQIPIGGVALDAL 192

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            ++    P   +L    P+F   +GK L+P   Q  + +L ++  +P+    H +RHSFA
Sbjct: 193 KKWMRQHPLAGDLQASTPVFTTRQGKALSPRSIQTRLDRLAKHNAIPVHVHPHMMRHSFA 252

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           +HLL + GDLR++Q +LGH  +STTQIYT+++ ++    + + YD  HP
Sbjct: 253 SHLLESSGDLRAVQELLGHSNISTTQIYTHLDFQH----LAKTYDAAHP 297


>gi|319954373|ref|YP_004165640.1| tyrosine recombinase xerc [Cellulophaga algicola DSM 14237]
 gi|319423033|gb|ADV50142.1| Tyrosine recombinase xerC [Cellulophaga algicola DSM 14237]
          Length = 298

 Score =  149 bits (376), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 103/307 (33%), Positives = 166/307 (54%), Gaps = 19/307 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L + QN+L+   IERGLS+ ++ SY  D ++ L+FL      KI    I Q+    ++ F
Sbjct: 7   LNDYQNYLK---IERGLSENSISSYSLDIQKLLLFLE---TNKIVTSPI-QIDKHIVQQF 59

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I +  ++ +  RS  R +SG+KSF  YL       ++ +  + + K    LP  L+E + 
Sbjct: 60  IYEI-SKDVNPRSQARIISGLKSFFNYLVFEDYRIDNPLELIESPKTGRKLPDTLSEDEI 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+  + L T         RN AIL  LYGCG+R+SE ++L   ++  ++  +++ GKG
Sbjct: 119 NDLIAAINLSTPE-----GERNRAILETLYGCGVRVSELINLKISDLFFEEDFIKVTGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           DK R VP+    +K I  Y +     LN+    +  LF   RG+ L   +    I+QL  
Sbjct: 174 DKQRFVPISDINKKYINLYKNEIRVHLNIQKGFEDILFLNRRGRQLTRAMIFTIIKQLAI 233

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            + L  + + HT RHSFATHLL NG DLR+IQ +LGH  ++TT++Y +V+  +    + +
Sbjct: 234 KIDLKKTISPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEVYMHVDRSH----LAQ 289

Query: 313 IYDQTHP 319
           + ++ HP
Sbjct: 290 VLNEFHP 296


>gi|325684289|gb|EGD26462.1| integrase/recombinase XerD [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 301

 Score =  149 bits (376), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 102/320 (31%), Positives = 168/320 (52%), Gaps = 35/320 (10%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L ++  ++L+  +IERGLS  T+ +Y  D    L FLAF  EE++       L   EI 
Sbjct: 6   KLAEQINDYLRYSQIERGLSPNTIAAYHQD---LLEFLAFVKEEQMPAWP---LEAVEID 59

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           AF++K R     + S+ R +S +  F ++L ++++     +  +   K+   +P AL E 
Sbjct: 60  AFLAKERDLGKANSSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEA 119

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L++   L T      +  R+ A++ LLY  G+R+SEA++L   ++  D   +++ G
Sbjct: 120 EVGKLLEQPDLTTD-----LGIRDRALVELLYATGIRVSEAVNLKLADVHADLQLIKVLG 174

Query: 193 KGDKIRIVPL-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
           KG+K R++P+           LP   + +L+      +         LF   RG  L   
Sbjct: 175 KGNKERLIPVSALALDWIKRYLPVRDQQLLKRGKSSDY---------LFLNSRGGQLTRQ 225

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              + I++  +  G+    T HTLRHSFATHLL +G DLR +Q ILGH  +STTQIYTN+
Sbjct: 226 AVWQKIKKYCQQAGIAKDVTPHTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYTNL 285

Query: 302 NSKNGGDWMMEIYDQTHPSI 321
             K+    ++++Y +THP I
Sbjct: 286 TQKH----ILDVYQKTHPRI 301


>gi|313123528|ref|YP_004033787.1| tyrosine recombinase xerd subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280091|gb|ADQ60810.1| Tyrosine recombinase XerD subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 301

 Score =  149 bits (376), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 102/320 (31%), Positives = 167/320 (52%), Gaps = 35/320 (10%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L ++  ++L+  +IERGLS  T+ +Y  D    L FLAF  EE++       L   EI 
Sbjct: 6   KLAEQINDYLRYSQIERGLSPNTIAAYHQD---LLEFLAFVKEEQMPAWP---LEAVEID 59

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           AF++K R     + S+ R +S +  F ++L ++++     +  +   K+   +P AL E 
Sbjct: 60  AFLAKERDLGKANSSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEA 119

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L++   L T      +  R+ A++ LLY  G+R+SEA++L   ++  D   +++ G
Sbjct: 120 EVGKLLEQPDLTTD-----LGIRDRALVELLYATGMRVSEAVNLKLADVHADLQLIKVLG 174

Query: 193 KGDKIRIVPL-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
           KG K R++P+           LP   + +L+      +         LF   RG  L   
Sbjct: 175 KGSKERLIPVSALALDWIKRYLPVRDQQLLKRGKSSDY---------LFLNSRGGQLTRQ 225

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              + I++  +  G+    T HTLRHSFATHLL +G DLR +Q ILGH  +STTQIYTN+
Sbjct: 226 AVWQKIKKYCQQAGIAKDVTPHTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYTNL 285

Query: 302 NSKNGGDWMMEIYDQTHPSI 321
             K+    ++++Y +THP I
Sbjct: 286 TQKH----ILDVYQKTHPRI 301


>gi|241896013|ref|ZP_04783309.1| integrase/recombinase [Weissella paramesenteroides ATCC 33313]
 gi|241870744|gb|EER74495.1| integrase/recombinase [Weissella paramesenteroides ATCC 33313]
          Length = 308

 Score =  149 bits (376), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/314 (31%), Positives = 160/314 (50%), Gaps = 13/314 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E  + +Q +L  L IER  S  T ++YE D  +FL FL+     K  +  +  ++  ++R
Sbjct: 5   EAERAKQLFLDYLRIERQYSLETQKAYEGDIAEFLTFLSGTQATKSIV--LSNITSFDVR 62

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F+S+   +  G R++ R +S ++SF ++L   ++  E+  + +   K    LPR   +K
Sbjct: 63  VFLSELYEKGDGSRTIARKVSSLRSFYRFLINNEMVAENPFVGIVLKKPGQHLPRYFYQK 122

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   + D V+   S     +  RN  +L +LYG G R+SE  ++T QN+      + I G
Sbjct: 123 ELTKMFDVVMTDQS----ALGLRNHLLLEMLYGTGARVSEIANMTLQNVDSHARVVTITG 178

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           KG+K RIVP       A+ +Y       L     +    LF   RG P+     +  ++Q
Sbjct: 179 KGNKTRIVPFGRYAADALAKYLKTGRPVLASKQADTSNKLFLNQRGAPVTTAGIEYILKQ 238

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           + +  GL    TAH  RH+FAT LL+N  DLR++Q +LGH  LSTTQIYT+V +    D 
Sbjct: 239 IGKKSGLTQEVTAHMFRHTFATDLLNNQADLRTVQQLLGHSSLSTTQIYTHVTT----DA 294

Query: 310 MMEIYDQTHPSITQ 323
           + + Y    P  ++
Sbjct: 295 LQKSYRNFFPRASE 308


>gi|308274298|emb|CBX30897.1| Tyrosine recombinase xerD [uncultured Desulfobacterium sp.]
          Length = 298

 Score =  149 bits (375), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 107/303 (35%), Positives = 158/303 (52%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
             +L  L +E+GLSK TL+SY  D   ++ FL      K  I+ I +     I   I   
Sbjct: 9   DQYLNYLVVEKGLSKKTLESYGSDIATYIDFLG-----KKGIKDISEADTPTILMHIIAL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNEKQALTL 137
           R   +  RS  R L  ++ F K+L + K+ T ++   + +L KS   LP  L + +  +L
Sbjct: 64  REDGLKARSRARHLVTLRGFYKFLVREKLIT-TDPTRVIDLPKSGFYLPNVLTQDEVKSL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L     +K    R+SA++ LLY  GLR+SE + L   ++  D   +R+ GKG K 
Sbjct: 123 -----LSVPDVSKPAGLRDSAMIELLYAAGLRVSELVGLKLFDVNMDACFVRVFGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVP+    ++ + EY +   P  L  N+   LF G  GKPL    F + I++      +
Sbjct: 178 RIVPIGTFAKEKVSEYINTARPLILKNNMSNFLFVGRGGKPLTRQGFWKIIKRYSTLGKI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + T H+LRHSFATHLL  G DLRS+Q +LGH  +STTQIYT+V      D + +I+ +
Sbjct: 238 TKTITPHSLRHSFATHLLEGGADLRSVQLMLGHVDISTTQIYTHVVR----DHLKKIHSK 293

Query: 317 THP 319
            HP
Sbjct: 294 YHP 296


>gi|238855202|ref|ZP_04645521.1| tyrosine recombinase XerD [Lactobacillus jensenii 269-3]
 gi|260664565|ref|ZP_05865417.1| tyrosine recombinase XerD [Lactobacillus jensenii SJ-7A-US]
 gi|282932504|ref|ZP_06337929.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1]
 gi|313471969|ref|ZP_07812461.1| tyrosine recombinase XerD [Lactobacillus jensenii 1153]
 gi|238832094|gb|EEQ24412.1| tyrosine recombinase XerD [Lactobacillus jensenii 269-3]
 gi|260561630|gb|EEX27602.1| tyrosine recombinase XerD [Lactobacillus jensenii SJ-7A-US]
 gi|281303453|gb|EFA95630.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1]
 gi|313449040|gb|EFR61308.1| tyrosine recombinase XerD [Lactobacillus jensenii 1153]
          Length = 300

 Score =  149 bits (375), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 108/331 (32%), Positives = 172/331 (51%), Gaps = 45/331 (13%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+ NNL ++  F         L+   +ERGLSK T+ SY+ D  QF+ +L    +EKI+ 
Sbjct: 1   MKKNNLDQVADF---------LRFCSLERGLSKNTVNSYQLDLNQFVEYL---DKEKISD 48

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
                L    I ++++K+R +     ++ R ++ ++ F +YL ++ I     ++ +   K
Sbjct: 49  WPEDPLV---IDSYLAKQRDEGKKTSTISRGITTLRRFYRYLLRQHILVVDPLIQIDTPK 105

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +   LP AL++K+   L+    L+T+        R+ AIL LLY  G+R+SE ++L   +
Sbjct: 106 QEKRLPLALSQKEVSELLAQPNLNTA-----TGLRDRAILELLYATGMRVSELINLKETD 160

Query: 181 IMDDQSTLRIQGKGDKIRIVPL-----------LPSVRK-AILEYYDLCPFDLNLNIQLP 228
           +  D   +R+ GKG K R+VP+           L  VR  A+L+    C F         
Sbjct: 161 LHTDLKIIRVLGKGSKERLVPVTDFALNWVDKYLKEVRDPALLKKGVACDF--------- 211

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LF   R   L      + I++  +   +    T HTLRH+FATHLL NG DLR +Q ILG
Sbjct: 212 LFLNNRAGQLTRQAVWQSIKKYSKLARIDKDITPHTLRHTFATHLLENGADLRVVQEILG 271

Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           H  +STTQIYTN++ K+    + ++Y +THP
Sbjct: 272 HSDISTTQIYTNLSQKH----IFDVYLKTHP 298


>gi|300214635|gb|ADJ79051.1| Integrase/recombinase, XerD/RipX family [Lactobacillus salivarius
           CECT 5713]
          Length = 297

 Score =  149 bits (375), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 102/302 (33%), Positives = 165/302 (54%), Gaps = 17/302 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L++ERGLS+ T+ SY  D + FL +L      +  I + +Q++   I  ++   +
Sbjct: 9   DYLHYLKVERGLSENTINSYGIDLKLFLEYL-----RENEIPSFKQVNKEVIVNYMQSEK 63

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                + S+ RS+S ++ F +YL + KI  +  +L +   KK   LP+ L +++      
Sbjct: 64  NNNKANSSILRSVSSLRKFFQYLAQEKIIEKDPMLLIDTPKKKQHLPQVLTKEEV----- 118

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL + +  + +  R+ A+L L+Y  GLRISE ++L  +++     TL+  GKG K RI
Sbjct: 119 EKLLRSPNTGQVLGLRDRAMLELMYATGLRISEIINLKLEDLHLTMGTLQTLGKGHKERI 178

Query: 200 VPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYLGLP 257
           VP+     K +  Y +   P  L       LF    G  L   GV++    ++R+  G+ 
Sbjct: 179 VPVGDEAIKWVNRYLEEARPKLLKQKRSNYLFLNFHGNNLTRQGVWKNLKAEVRK-AGIQ 237

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + T HTLRHSFATH+L NG DLR +Q +LGH  +STTQIYT++++K   D    IY++ 
Sbjct: 238 KNITPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHLSNKQLAD----IYNRA 293

Query: 318 HP 319
           HP
Sbjct: 294 HP 295


>gi|221310269|ref|ZP_03592116.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314592|ref|ZP_03596397.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319515|ref|ZP_03600809.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323791|ref|ZP_03605085.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|255767509|ref|NP_390232.2| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|321311827|ref|YP_004204114.1| site-specific tyrosine recombinase XerD [Bacillus subtilis BSn5]
 gi|251757430|sp|P46352|XERD_BACSU RecName: Full=Tyrosine recombinase xerD
 gi|225185137|emb|CAB14283.2| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|320018101|gb|ADV93087.1| site-specific tyrosine recombinase XerD [Bacillus subtilis BSn5]
          Length = 296

 Score =  149 bits (375), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 98/302 (32%), Positives = 159/302 (52%), Gaps = 14/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  + +ERGLS+ T+ SYE D + + ++L     E + +     ++   I  ++   
Sbjct: 6   KDFIHYVMVERGLSQNTIVSYERDLKSYSLYLT----ETLHVTDWNHVTRIHIIQYLKHL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +      ++  R L+ I+SF ++L + K+T +   +++   K   +LP+ L    AL  V
Sbjct: 62  KDSGKSGKTSARHLASIRSFHQFLLREKVTDKDPSVHIETQKTERALPKVL----ALNEV 117

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +  LL T   T     R+ A+L LLY  G+R+SE + L   ++      +R  GKG K R
Sbjct: 118 ER-LLDTPKLTSPFGYRDKAMLELLYATGIRVSEMIELKTADVHLSMGFIRCFGKGRKER 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           IVP+  +   AI EY       L   N+   LF    GK ++   F + ++++    G+ 
Sbjct: 177 IVPIGEAAASAIEEYMTKARGKLLKNNVSDALFLNHHGKQISRQGFWKNLKKIALEAGIK 236

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        + ++Y Q 
Sbjct: 237 KELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----LKDVYKQF 292

Query: 318 HP 319
           HP
Sbjct: 293 HP 294


>gi|104773902|ref|YP_618882.1| site-specific recombinase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103422983|emb|CAI97665.1| Site-specific recombinase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 298

 Score =  149 bits (375), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 102/320 (31%), Positives = 168/320 (52%), Gaps = 35/320 (10%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L ++  ++L+  +IERGLS  T+ +Y+ D    L FLAF  EE++       L   EI 
Sbjct: 3   KLAEQINDYLRYSQIERGLSPNTIAAYQQD---LLEFLAFVKEEQMPAWP---LEAVEID 56

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           AF++K R     + S+ R +S +  F ++L ++++     +  +   K+   +P AL E 
Sbjct: 57  AFLAKERDLGKANSSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEA 116

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L++   L T      +  R+ A+L LLY  G+R+SEA++L   ++  +   +++ G
Sbjct: 117 EVGKLLEQPDLTTD-----LGIRDRALLELLYATGMRVSEAVNLQLADVHANLQLIKVLG 171

Query: 193 KGDKIRIVPL-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
           KG K R++P+           LP   + +L+      +         LF   RG  L   
Sbjct: 172 KGSKERLIPVSALALDWIKRYLPVRDQQLLKRGKSSDY---------LFLNSRGGQLTRQ 222

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              + I++  +  G+    T HTLRHSFATHLL +G DLR +Q ILGH  +STTQIYTN+
Sbjct: 223 AVWQKIKKYCQQAGIAKDVTPHTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYTNL 282

Query: 302 NSKNGGDWMMEIYDQTHPSI 321
             K+    ++++Y +THP I
Sbjct: 283 TQKH----ILDVYQKTHPRI 298


>gi|328957336|ref|YP_004374722.1| site-specific tyrosine recombinase XerD [Carnobacterium sp. 17-4]
 gi|328673660|gb|AEB29706.1| site-specific tyrosine recombinase XerD [Carnobacterium sp. 17-4]
          Length = 299

 Score =  148 bits (374), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 163/303 (53%), Gaps = 16/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +++ L IERGLSK T++SY+ D RQ+L+F+     E+I +    Q+    + +F+   
Sbjct: 9   EEYIRFLTIERGLSKNTIESYKRDIRQYLVFI-----EQIKVTKWDQIDRYTVLSFLQDL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + ++    ++ R +S ++ F ++LK+ +I+    +L++   KK+  LP+ L+ K+     
Sbjct: 64  KEKEKSAGTIIRMISCLRQFHQFLKQEQISQSDPMLHIDTPKKAQKLPKVLSIKEV---- 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            + L+ T +  + +  R+ A+L ++Y  GLR+SE   L   ++      ++  GKGDK R
Sbjct: 120 -DRLIETPNTGETLGLRDRAMLEVMYATGLRVSELTELKLDDLHLSLGLIQTIGKGDKER 178

Query: 199 IVPLLPSVRKAILEY--YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           I+PL       I +Y  Y     + +      LF    G+ L      + ++ + +  G+
Sbjct: 179 IIPLGDLAITWIEKYLRYSRTKLEKDGQRSPHLFLNHHGRKLTRQGVWKNLKIIVKKAGI 238

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               T HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT++  K     M  +Y  
Sbjct: 239 EKEVTPHTLRHSFATHLLENGADLRVVQELLGHSDISTTQIYTHITKKR----MSSVYKT 294

Query: 317 THP 319
            HP
Sbjct: 295 YHP 297


>gi|301299326|ref|ZP_07205611.1| tyrosine recombinase XerD [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300853066|gb|EFK80665.1| tyrosine recombinase XerD [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 290

 Score =  148 bits (374), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 102/302 (33%), Positives = 165/302 (54%), Gaps = 17/302 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L++ERGLS+ T+ SY  D + FL +L      +  I + +Q++   I  ++   +
Sbjct: 2   DYLHYLKVERGLSENTINSYGIDLKLFLEYL-----RENEIPSFKQVNKEVIVNYMQSEK 56

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                + S+ RS+S ++ F +YL + KI  +  +L +   KK   LP+ L +++      
Sbjct: 57  NNNKANSSILRSVSSLRKFFQYLAQEKIIEKDPMLLIDTPKKKQHLPQVLTKEEV----- 111

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL + +  + +  R+ A+L L+Y  GLRISE ++L  +++     TL+  GKG K RI
Sbjct: 112 EKLLRSPNTGQVLGLRDRAMLELMYATGLRISEIINLKLEDLHLTMGTLQTLGKGHKERI 171

Query: 200 VPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYLGLP 257
           VP+     K +  Y +   P  L       LF    G  L   GV++    ++R+  G+ 
Sbjct: 172 VPVGDEAIKWVNRYLEEARPKLLKQKRSNYLFLNFHGNNLTRQGVWKNLKAEVRK-AGIQ 230

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + T HTLRHSFATH+L NG DLR +Q +LGH  +STTQIYT++++K   D    IY++ 
Sbjct: 231 KNITPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHLSNKQLAD----IYNRA 286

Query: 318 HP 319
           HP
Sbjct: 287 HP 288


>gi|110835195|ref|YP_694054.1| integrase/recombinase XerC [Alcanivorax borkumensis SK2]
 gi|122959294|sp|Q0VM16|XERC_ALCBS RecName: Full=Tyrosine recombinase xerC
 gi|110648306|emb|CAL17782.1| integrase/recombinase XerC [Alcanivorax borkumensis SK2]
          Length = 307

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/309 (31%), Positives = 165/309 (53%), Gaps = 16/309 (5%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           S   L+    +L +L  ER LS  T+  Y+ D  +    L     + +T+  +R L+   
Sbjct: 5   SHNTLQTVNTFLTHLASERRLSPHTVNGYQRDLIEARTLLGSQPWDTLTVHDMRSLA--- 61

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
                S  R  K G ++++R LS +++F +YL +  +  ++  +++R  K    LP+AL+
Sbjct: 62  ----ASLHRQGKSG-KTIQRMLSTLRTFFRYLMREGLARDNPAIDIRAPKSGKRLPKALD 116

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             Q   L+D      +  ++ +  R+ AI+ LLY CGLR++E LSL   +I   +S L +
Sbjct: 117 VDQVSHLLDA----GTSNSEPLALRDQAIMELLYACGLRLAELLSLNLDSIDLHESQLLV 172

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG+K R +P+      A+  +  + P  +  + Q  LF    G+ L+P   Q+ +++ 
Sbjct: 173 TGKGNKTRQLPVGKPALTAVRRWLQVRPMLIKSSDQNALFISKNGRRLSPSSVQQRLKRH 232

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               GL      H LRHSFATHLL + GDLR++Q +LGH  L+TTQ+YT+++ ++    +
Sbjct: 233 ALERGLDAHLHPHKLRHSFATHLLESSGDLRAVQELLGHADLATTQVYTHLDFQH----L 288

Query: 311 MEIYDQTHP 319
            ++YD  HP
Sbjct: 289 AQVYDGAHP 297


>gi|291484781|dbj|BAI85856.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           natto BEST195]
          Length = 296

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/302 (32%), Positives = 159/302 (52%), Gaps = 14/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  + +ERGLS+ T+ SYE D + + ++L     E + +     ++   I  ++   
Sbjct: 6   KDFIHYVMVERGLSQNTIVSYERDLKSYSLYLT----ETLHVTDWNHVTRIHIIQYLKHL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +      ++  R L+ I+SF ++L + K+T +   +++   K   +LP+ L    AL  V
Sbjct: 62  KDSGKSGKTSARHLASIRSFHQFLLREKVTDKDPSVHIETQKTERALPKVL----ALNEV 117

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +  LL T   T     R+ A+L LLY  G+R+SE + L   ++      +R  GKG K R
Sbjct: 118 ER-LLDTPKLTSPFGYRDKAMLELLYATGIRVSEMIELKTTDVHLSMGFVRCFGKGRKER 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           IVP+  +   AI EY       L   N+   LF    GK ++   F + ++++    G+ 
Sbjct: 177 IVPIGEAAASAIEEYMTKARGKLLKNNVSDALFLNHHGKQISRQGFWKNLKKIALEAGIK 236

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        + ++Y Q 
Sbjct: 237 KELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----LKDVYKQF 292

Query: 318 HP 319
           HP
Sbjct: 293 HP 294


>gi|228992829|ref|ZP_04152754.1| Tyrosine recombinase xerD [Bacillus pseudomycoides DSM 12442]
 gi|228998874|ref|ZP_04158459.1| Tyrosine recombinase xerD [Bacillus mycoides Rock3-17]
 gi|228760890|gb|EEM09851.1| Tyrosine recombinase xerD [Bacillus mycoides Rock3-17]
 gi|228766878|gb|EEM15516.1| Tyrosine recombinase xerD [Bacillus pseudomycoides DSM 12442]
          Length = 296

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 161/302 (53%), Gaps = 14/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  + +E+GL+K T+ SYE D + ++ +L    +    I+T  +++   I  F+   
Sbjct: 6   KDFIHYMIVEKGLAKNTVVSYERDLKSYVKYLQHVEQ----IKTFHEVTRIHIVNFLQYL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +      ++L R ++ I+SF ++L + ++      +++   +    LP+ L+  +     
Sbjct: 62  KENGKSSKTLARHIASIRSFHQFLLRERVVEHDPSVHIETPQGERKLPKVLSVSEV---- 117

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL T  ET     R+ A+L LLY  GLR+SE ++L  +++      +R  GKG+K R
Sbjct: 118 -EALLQTPKETSAFGIRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCVGKGNKER 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           I+PL     +AI  Y +    +L     +  LF    G  L+   F + +++L +   + 
Sbjct: 177 IIPLGSLATEAIQRYIEKGRKELMGKKTVDALFLNHHGNRLSRQGFWKILKRLAKEANIE 236

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + ++Y Q 
Sbjct: 237 KELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKAR----LKDVYKQF 292

Query: 318 HP 319
           HP
Sbjct: 293 HP 294


>gi|126663469|ref|ZP_01734466.1| site-specific recombinase [Flavobacteria bacterium BAL38]
 gi|126624417|gb|EAZ95108.1| site-specific recombinase [Flavobacteria bacterium BAL38]
          Length = 299

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/311 (33%), Positives = 164/311 (52%), Gaps = 27/311 (8%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE----KITIQTIRQLSYTE 70
           +KE QN+L+   +ERGLSK T+++Y  D  + ++FL  +  +     I+ +TI+Q  Y E
Sbjct: 8   IKEYQNYLR---LERGLSKNTIENYTFDIEKLVVFLNTHDIQVSPIHISEETIQQFIY-E 63

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           I +        K+  RS  R +SG+KSF  YL       ++ +  +   K    LP  L 
Sbjct: 64  IAS--------KVNARSQSRLISGLKSFFNYLVFEDYRKDTPLELIEVPKTGRKLPDTLA 115

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            ++   L+  + L T         RN A+L  LY CGLR+SE + L   ++  ++  ++I
Sbjct: 116 TEEIDALIAAIDLSTPE-----GERNRAMLETLYSCGLRVSELVGLKISDLFFEEGFIKI 170

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDL--CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            GKG+K R VP+  S  K I  Y +L    + +    +  LF   RGK L   +    I+
Sbjct: 171 TGKGNKQRFVPVGGSTIKYITSYMNLIRVHYTVQKGHEDTLFLNRRGKQLTRAMVFTIIK 230

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            L   + L  + + HT RHSFATHLL NG DLRSIQ +LGH  ++TT++Y +++ K    
Sbjct: 231 DLAVKINLNKTISPHTFRHSFATHLLENGADLRSIQLMLGHESITTTEVYMHLDRK---- 286

Query: 309 WMMEIYDQTHP 319
           ++ E+ +  HP
Sbjct: 287 FLSEVLNNYHP 297


>gi|293602487|ref|ZP_06684933.1| phage integrase family site-specific recombinase [Achromobacter
           piechaudii ATCC 43553]
 gi|292819249|gb|EFF78284.1| phage integrase family site-specific recombinase [Achromobacter
           piechaudii ATCC 43553]
          Length = 335

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/319 (31%), Positives = 153/319 (47%), Gaps = 27/319 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL++LE  R  S  TL  Y    R+           K+ +  I   +   IR FI++   
Sbjct: 28  WLRHLETNRRYSPHTLDGYR---RELHFLHELADRAKLPLDKI---ANGHIRQFIARLHA 81

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q  G RSL R+L+  + F ++         + +  +R  K    LP+AL+ +Q   L+D 
Sbjct: 82  QGRGPRSLARTLAAWRGFYQWWAPAVDLAGNPVAGVRAPKAPRGLPKALSVEQTQALLDR 141

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMD---------DQSTLR 189
                ++E   +  R+ A+  LLY  GLR+SE   L L      D         D++ + 
Sbjct: 142 PAAKVANEP--VALRDQAMFELLYSSGLRLSELVGLDLRYTRTADYESAGWLKLDEAEVE 199

Query: 190 IQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
           + GKG K R VP+    L ++ K I     L P          LF G RGK ++P V Q 
Sbjct: 200 VLGKGGKRRSVPVGQAALAALSKWIAARPQLAPPSPAPQDAAALFLGARGKRISPRVVQL 259

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            + Q  +  GLP     H LRHSFA+H+L +  DLR++Q +LGH  +STTQIYT ++ ++
Sbjct: 260 QLAQFAQAAGLPTHVHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQIYTRLDFQH 319

Query: 306 GGDWMMEIYDQTHPSITQK 324
               + + YDQ HP   +K
Sbjct: 320 ----LAKAYDQAHPRAGRK 334


>gi|69246761|ref|ZP_00604109.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus
           faecium DO]
 gi|257878024|ref|ZP_05657677.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257881190|ref|ZP_05660843.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257884853|ref|ZP_05664506.1| phage integrase [Enterococcus faecium 1,231,501]
 gi|257889777|ref|ZP_05669430.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|257892286|ref|ZP_05671939.1| phage integrase [Enterococcus faecium 1,231,408]
 gi|261207608|ref|ZP_05922293.1| phage integrase [Enterococcus faecium TC 6]
 gi|289565120|ref|ZP_06445573.1| tyrosine recombinase XerC [Enterococcus faecium D344SRF]
 gi|293556768|ref|ZP_06675331.1| tyrosine recombinase XerC [Enterococcus faecium E1039]
 gi|293563426|ref|ZP_06677875.1| tyrosine recombinase XerC [Enterococcus faecium E1162]
 gi|293568161|ref|ZP_06679497.1| tyrosine recombinase XerC [Enterococcus faecium E1071]
 gi|294614817|ref|ZP_06694712.1| tyrosine recombinase XerC [Enterococcus faecium E1636]
 gi|294617496|ref|ZP_06697127.1| tyrosine recombinase XerC [Enterococcus faecium E1679]
 gi|294622307|ref|ZP_06701350.1| tyrosine recombinase XerC [Enterococcus faecium U0317]
 gi|68195115|gb|EAN09575.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus
           faecium DO]
 gi|257812252|gb|EEV41010.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257816848|gb|EEV44176.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257820691|gb|EEV47839.1| phage integrase [Enterococcus faecium 1,231,501]
 gi|257826137|gb|EEV52763.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|257828665|gb|EEV55272.1| phage integrase [Enterococcus faecium 1,231,408]
 gi|260077991|gb|EEW65697.1| phage integrase [Enterococcus faecium TC 6]
 gi|289163127|gb|EFD10974.1| tyrosine recombinase XerC [Enterococcus faecium D344SRF]
 gi|291589151|gb|EFF20963.1| tyrosine recombinase XerC [Enterococcus faecium E1071]
 gi|291592279|gb|EFF23893.1| tyrosine recombinase XerC [Enterococcus faecium E1636]
 gi|291596236|gb|EFF27498.1| tyrosine recombinase XerC [Enterococcus faecium E1679]
 gi|291598199|gb|EFF29297.1| tyrosine recombinase XerC [Enterococcus faecium U0317]
 gi|291601100|gb|EFF31389.1| tyrosine recombinase XerC [Enterococcus faecium E1039]
 gi|291604687|gb|EFF34172.1| tyrosine recombinase XerC [Enterococcus faecium E1162]
          Length = 301

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 103/310 (33%), Positives = 160/310 (51%), Gaps = 27/310 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L+ L +ERG S+ T ++YE D   F  FL     E+     + +  Y  +R ++S  
Sbjct: 8   QKFLRYLIVERGYSEKTKEAYEEDILHFKHFL-----EESGDADLLKAEYFTVRVYLSAL 62

Query: 79  RTQK--IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNEKQAL 135
              +      S+ R ++ ++SF +YL K ++  E N  +  +LKK N  LPR   E +  
Sbjct: 63  ADHRPSYSRNSISRKIASLRSFYQYLLKEEVIKE-NPFSYVHLKKKNLRLPRFFYENEMQ 121

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L D+V   +      +D RN A+L +LYG G+R+SE  SL+  +I  D   + I GKG+
Sbjct: 122 ALFDSVAGDSP-----LDLRNRALLEVLYGSGIRLSECSSLSVSDIDFDSEVMLIHGKGN 176

Query: 196 KIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           K R  PL    + A+ EY+       +  +    +I   +F    GKP+ P   +  + Q
Sbjct: 177 KERYAPLGSFAQDALQEYFREGRQVLMTKYHEEHDI---VFVNHHGKPITPTGIEYVLNQ 233

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           + +   L      H LRH+FATHLL+NG DLR++Q +LGH  LSTTQIY +V  ++    
Sbjct: 234 MIKKSSLDSDIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKES---- 289

Query: 310 MMEIYDQTHP 319
           + + Y   HP
Sbjct: 290 LQKNYRSFHP 299


>gi|314938036|ref|ZP_07845346.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a04]
 gi|314941978|ref|ZP_07848839.1| tyrosine recombinase XerC [Enterococcus faecium TX0133C]
 gi|314948769|ref|ZP_07852141.1| tyrosine recombinase XerC [Enterococcus faecium TX0082]
 gi|314951787|ref|ZP_07854826.1| tyrosine recombinase XerC [Enterococcus faecium TX0133A]
 gi|314991806|ref|ZP_07857264.1| tyrosine recombinase XerC [Enterococcus faecium TX0133B]
 gi|314995847|ref|ZP_07860934.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a01]
 gi|313589951|gb|EFR68796.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a01]
 gi|313593617|gb|EFR72462.1| tyrosine recombinase XerC [Enterococcus faecium TX0133B]
 gi|313596066|gb|EFR74911.1| tyrosine recombinase XerC [Enterococcus faecium TX0133A]
 gi|313599230|gb|EFR78075.1| tyrosine recombinase XerC [Enterococcus faecium TX0133C]
 gi|313642611|gb|EFS07191.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a04]
 gi|313644835|gb|EFS09415.1| tyrosine recombinase XerC [Enterococcus faecium TX0082]
          Length = 314

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 103/310 (33%), Positives = 160/310 (51%), Gaps = 27/310 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L+ L +ERG S+ T ++YE D   F  FL     E+     + +  Y  +R ++S  
Sbjct: 21  QKFLRYLIVERGYSEKTKEAYEEDILHFKHFL-----EESGDADLLKAEYFTVRVYLSAL 75

Query: 79  RTQK--IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNEKQAL 135
              +      S+ R ++ ++SF +YL K ++  E N  +  +LKK N  LPR   E +  
Sbjct: 76  ADHRPSYSRNSISRKIASLRSFYQYLLKEEVIKE-NPFSYVHLKKKNLRLPRFFYENEMQ 134

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L D+V   +      +D RN A+L +LYG G+R+SE  SL+  +I  D   + I GKG+
Sbjct: 135 ALFDSVAGDSP-----LDLRNRALLEVLYGSGIRLSECSSLSVSDIDFDSEVMLIHGKGN 189

Query: 196 KIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           K R  PL    + A+ EY+       +  +    +I   +F    GKP+ P   +  + Q
Sbjct: 190 KERYAPLGSFAQDALQEYFREGRQVLMTKYHEEHDI---VFVNHHGKPITPTGIEYVLNQ 246

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           + +   L      H LRH+FATHLL+NG DLR++Q +LGH  LSTTQIY +V  ++    
Sbjct: 247 MIKKSSLDSDIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKES---- 302

Query: 310 MMEIYDQTHP 319
           + + Y   HP
Sbjct: 303 LQKNYRSFHP 312


>gi|260559074|ref|ZP_05831260.1| phage integrase [Enterococcus faecium C68]
 gi|260074831|gb|EEW63147.1| phage integrase [Enterococcus faecium C68]
          Length = 301

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 103/310 (33%), Positives = 160/310 (51%), Gaps = 27/310 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L+ L +ERG S+ T ++YE D   F  FL     E+     + +  Y  +R ++S  
Sbjct: 8   QKFLRYLIVERGYSEKTKEAYEEDILHFKHFL-----EESGDADLLKAEYFTVRVYLSAL 62

Query: 79  RTQK--IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNEKQAL 135
              +      S+ R ++ ++SF +YL K ++  E N  +  +LKK N  LPR   E +  
Sbjct: 63  ADHRSSYSRNSISRKIASLRSFYQYLLKEEVIKE-NPFSYVHLKKKNLRLPRFFYENEMQ 121

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L D+V   +      +D RN A+L +LYG G+R+SE  SL+  +I  D   + I GKG+
Sbjct: 122 ALFDSVAGDSP-----LDLRNRALLEVLYGSGIRLSECSSLSVSDIDFDSEVMLIHGKGN 176

Query: 196 KIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           K R  PL    + A+ EY+       +  +    +I   +F    GKP+ P   +  + Q
Sbjct: 177 KERYAPLGSFAQDALQEYFREGRQVLMTKYHEEHDI---VFVNHHGKPITPTGIEYVLNQ 233

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           + +   L      H LRH+FATHLL+NG DLR++Q +LGH  LSTTQIY +V  ++    
Sbjct: 234 MIKKSSLDSDIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKES---- 289

Query: 310 MMEIYDQTHP 319
           + + Y   HP
Sbjct: 290 LQKNYRSFHP 299


>gi|120555190|ref|YP_959541.1| tyrosine recombinase XerD [Marinobacter aquaeolei VT8]
 gi|120325039|gb|ABM19354.1| tyrosine recombinase XerD subunit [Marinobacter aquaeolei VT8]
          Length = 301

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/294 (33%), Positives = 152/294 (51%), Gaps = 14/294 (4%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +E GL + T Q+Y  D    L  L+ + E++    T+R    T++ A++S+  +  +   
Sbjct: 19  LEDGLGEKTRQAYASD----LYRLSGWLEQQAGAPTLRSARRTDLLAWMSRGLSDGLKTS 74

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           +  R LSG++ F ++L +  I  E   L + + +    LP  L E      V+++L    
Sbjct: 75  TAARRLSGVRRFYRFLLREGIIAEDPTLRIDSPRLPRRLPDTLTEAD----VESLLTEPD 130

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
            E   ++ R+ A+L +LYGCGLR+SE   LT   +   Q  +RIQGKG K R+VPL    
Sbjct: 131 PELP-VELRDRAMLEILYGCGLRVSELTGLTVDQVNLRQGVVRIQGKGGKERLVPLGEEA 189

Query: 207 RKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              +L+Y      +L        LF G RG  +    F   IR      G+    + HTL
Sbjct: 190 VDWLLQYMRQARGELLRGKTSDALFPGNRGTAMTRQAFWYRIRHYAIRCGITKHLSPHTL 249

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           RH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V  +     + +++   HP
Sbjct: 250 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARQR----LQDLHQAHHP 299


>gi|253997561|ref|YP_003049625.1| tyrosine recombinase XerC [Methylotenera mobilis JLW8]
 gi|253984240|gb|ACT49098.1| tyrosine recombinase XerC [Methylotenera mobilis JLW8]
          Length = 293

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/307 (33%), Positives = 162/307 (52%), Gaps = 23/307 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++Q+L  ERGLS+LT  +Y  D     I L     E   +QTI   S+ +IR FI K   
Sbjct: 7   YIQHLTFERGLSQLTCINYRRD-----ISLLESLAEAADLQTI---SHAQIRRFIGKLHA 58

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +++  +S+ R+LS  + F  YL      T++ +  +R  K + +LP+AL+  QA+  VD 
Sbjct: 59  RELSSKSIARALSAWRGFYDYLIHHHGYTQNPVHGLRAPKAAKTLPQALSVDQAVNFVD- 117

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                      +D R+ AIL L Y  GLR++E ++L    +     T+ + GKG+K RIV
Sbjct: 118 -----IQGGGTLDLRDHAILELFYSSGLRLAELVNLDIDRLDFTDGTVEVIGKGNKTRIV 172

Query: 201 PLLPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           PL     +A+   L+   L P     N Q  +F   +GK + P   Q  ++      G  
Sbjct: 173 PLGSHAAEAMQKWLQARALIP-TAETNKQ-AVFITQQGKRITPRAVQYRVKAWAIKQGAD 230

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            +   H LRHSFA+H+L +  DLR++Q +LGH  +STTQ+YT+++ ++    + ++YD  
Sbjct: 231 SNLHPHMLRHSFASHVLQSSQDLRAVQEMLGHANISTTQVYTHLDFQH----LAKVYDNA 286

Query: 318 HPSITQK 324
           HP   +K
Sbjct: 287 HPRAKKK 293


>gi|281357422|ref|ZP_06243910.1| integrase family protein [Victivallis vadensis ATCC BAA-548]
 gi|281316025|gb|EFB00051.1| integrase family protein [Victivallis vadensis ATCC BAA-548]
          Length = 314

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/312 (33%), Positives = 154/312 (49%), Gaps = 19/312 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +LQ L +ER  S  T+++Y  D    L FL    E   +     Q+   + R F+S   
Sbjct: 7   GFLQYLRVERNASSHTVEAYRSD---ILEFLRRVMEADESFNAWSQVERNQARRFVSSLF 63

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP--RALNEKQALT- 136
                 RS++R LS ++SF +Y+ + ++  ++  L +  +K    LP   ++N+   LT 
Sbjct: 64  EAGDSKRSIQRKLSALRSFFRYMMRMELLGDNPFLKLPPIKADQPLPLVMSINQIDLLTK 123

Query: 137 --------LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
                      N +  +    ++  AR+ A++ ++Y  GLRISE   L   +I       
Sbjct: 124 AVGEYWEMAAANGISKSDEAAEFAAARDLAMVEVIYSGGLRISETTGLDMGDIDLIGGIA 183

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           R++GKG K RI  L    +KA+  Y+ L            P+F    GK L P  FQR +
Sbjct: 184 RVRGKGKKERIAVLGRPSQKALRNYFKLRSTVGGGRAPGSPVFLNKFGKRLTPRSFQRNL 243

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +       LP   T H LRHSFATHLL  G DLRS+Q +LGH  LSTTQIYT+V+++   
Sbjct: 244 KNYLIAANLPPDLTPHKLRHSFATHLLDAGADLRSVQEMLGHENLSTTQIYTHVSAER-- 301

Query: 308 DWMMEIYDQTHP 319
             M E+Y + HP
Sbjct: 302 --MKEVYKEAHP 311


>gi|161507450|ref|YP_001577404.1| integrase/recombinase [Lactobacillus helveticus DPC 4571]
 gi|260101638|ref|ZP_05751875.1| integrase/recombinase XerD [Lactobacillus helveticus DSM 20075]
 gi|160348439|gb|ABX27113.1| Integrase/recombinase [Lactobacillus helveticus DPC 4571]
 gi|260084571|gb|EEW68691.1| integrase/recombinase XerD [Lactobacillus helveticus DSM 20075]
 gi|323466665|gb|ADX70352.1| Tyrosine recombinase xerD [Lactobacillus helveticus H10]
 gi|328467464|gb|EGF38539.1| tyrosine recombinase xerD [Lactobacillus helveticus MTCC 5463]
          Length = 301

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/324 (31%), Positives = 168/324 (51%), Gaps = 26/324 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ME N L + +         ++L+  +IERGLS  T+ +Y  D  ++L F+     +    
Sbjct: 1   MEKNKLQDQID--------DYLRYSQIERGLSSNTITAYRQDLEEYLAFVKKEGMDSWPT 52

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           +       +++ AF++++        S+ R +S ++ F ++L ++ I   + +L +   K
Sbjct: 53  EA------SDVDAFLARQYDLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPK 106

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K   LP ALN+K+      N LL      + +  R+ AIL  LY  G+R+SE ++L  Q+
Sbjct: 107 KERRLPVALNQKEI-----NDLLAQPDIKRKLGLRDRAILETLYATGMRVSELINLELQD 161

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI---QLPLFRGIRGKP 237
           + +D   +R+ GKG K R++P+       I +Y       L L        +F   R K 
Sbjct: 162 LHEDLGLVRVLGKGSKERLIPISSVALHWIKQYQKEVRDPLILKAGQNDEHIFLNSRAKQ 221

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L      + I++  +  G+    T HTLRH+FATHLL NG DLR +Q ILGH  +STTQI
Sbjct: 222 LTRQAIWQMIKKYCQSAGITKDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQI 281

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSI 321
           YTN++ K+    ++++Y +THP +
Sbjct: 282 YTNLSQKH----ILQVYQKTHPRL 301


>gi|294500946|ref|YP_003564646.1| tyrosine recombinase XerC [Bacillus megaterium QM B1551]
 gi|294350883|gb|ADE71212.1| tyrosine recombinase XerC [Bacillus megaterium QM B1551]
          Length = 300

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/317 (33%), Positives = 164/317 (51%), Gaps = 30/317 (9%)

Query: 13  ELLKERQN-WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           E +K+  N +L+ L+IE+  SK T+  YE D     IF++F  EE+I  Q ++ ++Y + 
Sbjct: 2   EFVKDVLNSFLEYLQIEKNYSKYTVDCYEKDIG---IFMSFMQEEQI--QNLQSVTYADA 56

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALN 130
           R F+++   ++   RS+ R +S +++F +YL + ++  E N   +  L KK    PR L 
Sbjct: 57  RLFLTRLYEKQYSKRSMSRKISCLRTFYRYLNREELV-EDNPFALVTLPKKEERNPRFLY 115

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           E++ + L        +  T  +  RN ++L LLY  G+R+SE  S+   +I     TL +
Sbjct: 116 EEEIVKL-----FQMNDLTTPLGQRNQSLLELLYATGIRVSECASIKLSDIDFSLQTLLV 170

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYD--------LCPFDLNLNIQLPLFRGIRGKPLNPGV 242
            GKG K R VP     + A+  Y D          P D +      LF   +G PL    
Sbjct: 171 YGKGKKQRYVPFGCYAKGALRVYIDNGRKLLLKKAPSDTH-----SLFLNYKGTPLTDRG 225

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +  I QL +     +  + H LRH+FATH+L+ G DLR++Q +LGH  LSTTQIYT+V 
Sbjct: 226 IRLVIDQLVKKTAENIHISPHVLRHTFATHMLNEGADLRTVQEMLGHEHLSTTQIYTHVT 285

Query: 303 SKNGGDWMMEIYDQTHP 319
                D +  +Y   HP
Sbjct: 286 K----DRLKAVYMNHHP 298


>gi|312880071|ref|ZP_07739871.1| integrase family protein [Aminomonas paucivorans DSM 12260]
 gi|310783362|gb|EFQ23760.1| integrase family protein [Aminomonas paucivorans DSM 12260]
          Length = 308

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/303 (33%), Positives = 163/303 (53%), Gaps = 21/303 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  L +ERG S+ TL++Y  D   F  F A   +     +        E+  F+ + 
Sbjct: 23  ESFLTYLALERGASEHTLRAYRSDLTHFEDFCARRGKPPCPPEE------NELTLFLREL 76

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES-NILNMRNLKKSNSLPRALNEKQALTL 137
           + Q +   S++R  + ++SFL++L+++     S   L++ +  +   LP+ L E +    
Sbjct: 77  QRQGLAASSVQRRAACLRSFLRFLQEQGEPAASREPLSLPD--RPAPLPQILTEGEV--- 131

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               LL T   +  +D R+ A+  L+YGCGLR SEA SL  +++     TLR+QGKG+K 
Sbjct: 132 --GRLLETCDGSASLDLRDRALFELIYGCGLRASEACSLRLRDVDFTGGTLRVQGKGNKT 189

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RIVPLL  VRKA+  Y      +   + +  L    R +PL      R +R+     G+P
Sbjct: 190 RIVPLLGEVRKAVERYLAAGRGEAPGDPEALLLSRNR-RPLRREDLWRIVRRRGVQAGIP 248

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            S    H LRHSFATHLL +G DLR++QS+LGH  L TT+ YT+ + +     + ++YD+
Sbjct: 249 SSRLHPHILRHSFATHLLRHGMDLRTLQSLLGHASLGTTEKYTHFDQE-----LRDVYDR 303

Query: 317 THP 319
            HP
Sbjct: 304 AHP 306


>gi|89895297|ref|YP_518784.1| hypothetical protein DSY2551 [Desulfitobacterium hafniense Y51]
 gi|89334745|dbj|BAE84340.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 298

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/288 (34%), Positives = 152/288 (52%), Gaps = 14/288 (4%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ TL +Y  D  QF  F A    E+    T+ Q+    +R+F+ +   + +  +S+ R 
Sbjct: 20  SQHTLMAYHKDLIQFFEFAARELGEEPEKVTVDQVDIYIVRSFLGEMTERGLERKSMARK 79

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           LS +++F K+L +  I  ++ I  +   K    LP  L+ ++      + L+ T      
Sbjct: 80  LSALRAFFKFLCREGILQKNPIQRIATPKLGRKLPHFLSLEEL-----DRLIRTPDCATL 134

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           + AR+  IL LLYG GLR+SE   L  ++I +  S LR++GKG+K RIVPL     +A  
Sbjct: 135 LGARDQVILELLYGSGLRVSELADLNCRDIDEGTSLLRVRGKGNKERIVPLTHYALEAAR 194

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           +Y      ++  + Q  L    +G  L+    +R +  L    GL      H LRHSFAT
Sbjct: 195 QY-----LEMREDKQEALLLNYQGTRLSVRSIRRILDGLALEAGLSQHLHPHMLRHSFAT 249

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HLL  G DLRS+Q +LGH +LS+TQIYT++      + + E+Y+Q HP
Sbjct: 250 HLLDGGADLRSVQELLGHAKLSSTQIYTHLTK----ERLREVYEQNHP 293


>gi|1303994|dbj|BAA12649.1| YqkM [Bacillus subtilis]
          Length = 296

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 159/302 (52%), Gaps = 14/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  + +ERGLS+ T+ SYE D + + ++L     E + +     ++   I  ++   
Sbjct: 6   KDFIHYVMVERGLSQNTIVSYERDLKSYSLYLT----ETLHVTDWNHVTRIHIIQYLKHL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +      ++  R L+ I+SF ++L + K+T +   +++   K   +LP+ L    AL  V
Sbjct: 62  KDSGKSGKTSARHLASIRSFHQFLLREKVTDKDPSVHIETQKTERALPKVL----ALNEV 117

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +  LL T   T     R+ A+L LLY  G+R+SE + L   ++      +R  GKG K R
Sbjct: 118 ER-LLDTPKLTSPFGYRDKAMLELLYATGIRVSEMIELKTADVHLSMGFIRCFGKGRKER 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           IVP+  +   AI EY       L   N+   LF    GK ++   F + ++++    G+ 
Sbjct: 177 IVPIGEAAASAIEEYMTKARGKLLKNNVSDALFLNHHGKQISRQGFWKNLKKIALEAGIK 236

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T HTLRHSFATHLL +G DLR++Q +LGH  +STTQIYT+V        + ++Y Q 
Sbjct: 237 KELTPHTLRHSFATHLLEDGADLRAVQEMLGHADISTTQIYTHVTKTR----LKDVYKQF 292

Query: 318 HP 319
           HP
Sbjct: 293 HP 294


>gi|315653500|ref|ZP_07906421.1| integrase/recombinase XerD [Lactobacillus iners ATCC 55195]
 gi|315489191|gb|EFU78832.1| integrase/recombinase XerD [Lactobacillus iners ATCC 55195]
          Length = 297

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 166/307 (54%), Gaps = 20/307 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L+  +IERGLS  TL SY  D    L + +F     IT   +  L    I +F+++ 
Sbjct: 7   EDYLRFAQIERGLSNNTLLSYRQD---LLEYFSFLKSLGITTWEVDALI---IDSFLAQE 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R +     S+ R LS ++ F ++L ++ +  +  +L + + KK   LP AL+  +   L+
Sbjct: 61  RDKGKAIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPTALSTTEVTKLI 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +         T  +  R+ AIL  LY  G+R+SE ++L   +I ++   +++ GKG K R
Sbjct: 121 N-----MPDTTTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQR 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           ++P+  +V  + ++ Y +   +  L      +  +F   RG  +      + I++  +  
Sbjct: 176 LIPI-SNVAMSWIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLA 234

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+  + T HTLRH+FATHLL NG DLR +Q ILGH  +STTQIYTN+  K+    +M++Y
Sbjct: 235 GINKNVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKH----IMDVY 290

Query: 315 DQTHPSI 321
            +THP I
Sbjct: 291 KRTHPRI 297


>gi|134299829|ref|YP_001113325.1| tyrosine recombinase XerC [Desulfotomaculum reducens MI-1]
 gi|134052529|gb|ABO50500.1| tyrosine recombinase XerC subunit [Desulfotomaculum reducens MI-1]
          Length = 298

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 161/300 (53%), Gaps = 10/300 (3%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N++  L++++  S  T+++Y+ D    L + +    + I       ++ + +R F++  R
Sbjct: 7   NFVNYLKVQKNFSIHTIEAYQKDLFDGLDYFSIVLNKPIEKMDHASINSSLVREFLAYLR 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +   ++ R L+  ++F K+L   ++   + +L + N K+   LP+ L +++   LV+
Sbjct: 67  QKNLSRATVARKLASWRAFFKFLYNERLAYTNPMLRVANPKREKRLPKFLYQEETKQLVE 126

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                 + +   +  R+ A+L LLY  G+R+SE ++L   NI   +  +R+ GKG K R+
Sbjct: 127 ------APDHSPLGIRDRALLELLYATGIRVSELVALDLSNIDLARGYIRVMGKGSKERV 180

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VP   S   A+ EY       + +     +F   +G  L+    ++ + +  + LG+ L+
Sbjct: 181 VPFHQSAVAAMKEYCRNARPKMVIKDCEAVFVNYKGTRLSDRGIRKIVDKYCQRLGMKLN 240

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HT+RHSFATHLL NG DLRS+Q +LGH  LSTTQIYT+V  K     +  +Y  +HP
Sbjct: 241 VSPHTIRHSFATHLLDNGADLRSVQELLGHVSLSTTQIYTHVTKKK----IKRVYKMSHP 296


>gi|77918237|ref|YP_356052.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380]
 gi|77544320|gb|ABA87882.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380]
          Length = 332

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/321 (33%), Positives = 166/321 (51%), Gaps = 24/321 (7%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI---TIQTIRQLS 67
            F++ +    + ++LE+ER LS  TL++Y  D  +F  FL     E+    T   I Q+ 
Sbjct: 28  GFDMDRLIARFCRHLEVERNLSPHTLRAYRQDLTEFSRFLKQEAGEEGSSNTASAIEQVD 87

Query: 68  YTEIRAFISK--RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
              +R ++++  +R +K    ++ R LS ++SF +YL ++     S    +   K+   L
Sbjct: 88  ALVLRRYLARLHKRNRKT---TIGRKLSAVRSFFRYLVRQGELAVSPAETVATPKREQYL 144

Query: 126 PRALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           P+ L        VD V  L+  +   + +  R+ AIL L Y  GLR+ E   L   ++  
Sbjct: 145 PKVLT-------VDEVFALIKAADGDEPLTVRDRAILELFYSSGLRVGELEGLDVGHVDL 197

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
               +R++GKGDK RIVP+    R+A+  Y  L    +    Q PLF   RG  L+    
Sbjct: 198 RDGLVRVRGKGDKERIVPMGRPARQALGRY--LAERGVPDREQ-PLFLNYRGGRLSSRSI 254

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +R +++     G+    + H LRH+FATHLL  G DLR+IQ +LGH  LSTTQ YT V+ 
Sbjct: 255 ERNLKKWLLCAGILKDASPHALRHTFATHLLDGGADLRAIQELLGHASLSTTQKYTQVSL 314

Query: 304 KNGGDWMMEIYDQTHPSITQK 324
               D +ME+YD+THP   +K
Sbjct: 315 ----DRLMEVYDRTHPRGRKK 331


>gi|257869544|ref|ZP_05649197.1| phage integrase [Enterococcus gallinarum EG2]
 gi|257803708|gb|EEV32530.1| phage integrase [Enterococcus gallinarum EG2]
          Length = 296

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 107/305 (35%), Positives = 165/305 (54%), Gaps = 22/305 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L IERGLS+ T +SYE D  Q+L FL   TE+ I  +  + +    I +F+ + +
Sbjct: 7   DYLHYLTIERGLSQNTRKSYERDLEQYLTFL---TEQHI--KDWQAVDRVLILSFLQQLQ 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  ++ R +S ++ F ++L++ + T    + ++ + KK   LP  L    +L+ V+
Sbjct: 62  QSGKSSATIIRMVSSLRRFHQFLRQERFTDHDPMQHIDSPKKQQKLPDTL----SLSEVE 117

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             L+ T    + +  R+ AIL ++Y  GLR+SE + L  +++      L+  GKGDK RI
Sbjct: 118 R-LIETPDTKEVLGIRDRAILEVMYATGLRVSELIGLQLKDLHLSMGLLQTTGKGDKERI 176

Query: 200 VPLLPSVRKAILEYYDLC-PFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYL 254
           VPL     + I  Y +   PF   L  + P    LF    GK L+     + ++ L R  
Sbjct: 177 VPLGDLAIQWIETYLEEARPF---LTRKHPEESHLFVNNHGKQLSRQGIWKNLKALVRKA 233

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+  + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT++  K     M E+Y
Sbjct: 234 GITKNVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR----MTEVY 289

Query: 315 DQTHP 319
            Q  P
Sbjct: 290 KQHFP 294


>gi|306836032|ref|ZP_07469022.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726]
 gi|304568059|gb|EFM43634.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726]
          Length = 296

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 99/301 (32%), Positives = 150/301 (49%), Gaps = 15/301 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q WL +L +ERG+S  TL +Y  D R+++ +LA        +Q +RQ++   + A++   
Sbjct: 9   QTWLNHLAVERGVSANTLSNYRRDIRRYVDWLA-----DNGVQDLRQVTRPMVEAYLKDL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R +K+   S  R+L   +   K+              +        LP  L+  +   L+
Sbjct: 64  R-EKMAVSSANRALIVARGLHKFAVAEGEVDSDVAAEVSPPSTGQHLPETLSVDEVSRLI 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           ++    T  ET  +D R+ A+L +LYG G RISE +SL   ++      L + GKGDK R
Sbjct: 123 ES----TPTETP-VDLRDRALLEVLYGTGARISEVISLNVDDVATADDVLMLHGKGDKER 177

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VPL    R+AI  Y       L       LF   RG  L+       I+   +   L  
Sbjct: 178 LVPLGSHARQAIDAYLVRARPVLGKGKTAALFLNTRGGALSRQSAWSIIKTAAQRSQLDK 237

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           S + HTLRHSFATHLL  G D+R++Q +LGH  ++TTQIYT+V +    D + E++   H
Sbjct: 238 SISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTA----DSLREVWRTAH 293

Query: 319 P 319
           P
Sbjct: 294 P 294


>gi|295706292|ref|YP_003599367.1| tyrosine recombinase XerC [Bacillus megaterium DSM 319]
 gi|294803951|gb|ADF41017.1| tyrosine recombinase XerC [Bacillus megaterium DSM 319]
          Length = 300

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 105/317 (33%), Positives = 164/317 (51%), Gaps = 30/317 (9%)

Query: 13  ELLKERQN-WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           E +K+  N +L+ L+IE+  SK T+  YE D     IF++F  EE+I  Q ++ ++Y + 
Sbjct: 2   EFVKDVLNSFLEYLQIEKNYSKYTVDCYEKDIG---IFMSFMQEEQI--QNLQSVTYADA 56

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALN 130
           R F+++   ++   RS+ R +S +++F +YL + ++  E N   +  L KK    PR L 
Sbjct: 57  RLFLTRLYEKQYSKRSMSRKISCLRTFYRYLNREELV-EDNPFALVTLPKKEERNPRFLY 115

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           E++ + L        +  T  +  RN ++L LLY  G+R+SE  S+   +I     TL +
Sbjct: 116 EEEIVKL-----FQMNDLTTPLGQRNQSLLELLYATGIRVSECSSIKLSDIDFSLQTLLV 170

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYD--------LCPFDLNLNIQLPLFRGIRGKPLNPGV 242
            GKG K R VP     + A+  Y D          P D +      LF   +G PL    
Sbjct: 171 YGKGKKQRYVPFGCYAKGALRVYIDNGRKLLLKKAPSDTH-----SLFLNYKGTPLTDRG 225

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +  I QL +     +  + H LRH+FATH+L+ G DLR++Q +LGH  LSTTQIYT+V 
Sbjct: 226 IRLVIDQLVKKTAENIHISPHVLRHTFATHMLNEGADLRTVQEMLGHEHLSTTQIYTHVT 285

Query: 303 SKNGGDWMMEIYDQTHP 319
                D +  +Y   HP
Sbjct: 286 K----DRLKAVYMNHHP 298


>gi|116513910|ref|YP_812816.1| integrase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093225|gb|ABJ58378.1| tyrosine recombinase XerD subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|325125576|gb|ADY84906.1| Integrase-recombinase [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 298

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 101/320 (31%), Positives = 167/320 (52%), Gaps = 35/320 (10%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L ++  ++L+  +IERGLS  T+ +Y+ D    L FLAF  EE++       L   EI 
Sbjct: 3   KLAEQINDYLRYSQIERGLSPNTIAAYQQD---LLEFLAFVKEEQMPAWP---LEAVEID 56

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           AF++K R     + S+ R +S +  F ++L ++++     +  +   K+   +P AL E 
Sbjct: 57  AFLAKERDLGKANSSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEA 116

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L++   L T      +  R+  +L LLY  G+R+SEA++L   ++  +   +++ G
Sbjct: 117 EVGKLLEQPDLTTD-----LGIRDRVLLELLYATGMRVSEAVNLQLADVHANLQLIKVLG 171

Query: 193 KGDKIRIVPL-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
           KG K R++P+           LP   + +L+      +         LF   RG  L   
Sbjct: 172 KGSKERLIPVSALALDWIKRYLPVRDQQLLKRGKSSDY---------LFLNSRGGQLTRQ 222

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              + I++  +  G+    T HTLRHSFATHLL +G DLR +Q ILGH  +STTQIYTN+
Sbjct: 223 AVWQKIKKYCQQAGIAKDVTPHTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYTNL 282

Query: 302 NSKNGGDWMMEIYDQTHPSI 321
             K+    ++++Y +THP I
Sbjct: 283 TQKH----ILDVYQKTHPRI 298


>gi|296332285|ref|ZP_06874747.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674986|ref|YP_003866658.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296150599|gb|EFG91486.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413230|gb|ADM38349.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 296

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 159/302 (52%), Gaps = 14/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  + +ERGLS+ T+ SYE D + + ++L     E + +     ++   I  ++   
Sbjct: 6   KDFIHYVMVERGLSQNTVVSYERDLKSYSLYLT----ETLHVTDWNHVTRIHIIQYLKHL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +      ++  R L+ I+SF ++L + K+T +   +++   K   +LP+ L    AL  V
Sbjct: 62  KDSGKSGKTSARHLASIRSFHQFLLREKVTDKDPSVHIETQKTERALPKVL----ALNEV 117

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +  LL T   T     R+ A+L LLY  G+R+SE + L   ++      +R  GKG K R
Sbjct: 118 ER-LLDTPKLTSPFGYRDKAMLELLYATGIRVSEMIELKTADVHLSMGFVRCFGKGRKER 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           IVP+  +   AI EY       L   N+   LF    GK ++   F + ++++    G+ 
Sbjct: 177 IVPIGEAAASAIEEYITKARGKLLKNNVSDALFLNHHGKQISRQGFWKNLKKIALEAGIK 236

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T HTLRHSFA+HLL NG DLR++Q +LGH  +STTQIYT+V        + ++Y Q 
Sbjct: 237 KELTPHTLRHSFASHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----LKDVYKQF 292

Query: 318 HP 319
           HP
Sbjct: 293 HP 294


>gi|309807082|ref|ZP_07701061.1| tyrosine recombinase XerD [Lactobacillus iners LactinV 03V1-b]
 gi|309809309|ref|ZP_07703178.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 2503V10-D]
 gi|325911997|ref|ZP_08174399.1| tyrosine recombinase XerD [Lactobacillus iners UPII 143-D]
 gi|325912838|ref|ZP_08175216.1| tyrosine recombinase XerD [Lactobacillus iners UPII 60-B]
 gi|329921320|ref|ZP_08277758.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 1401G]
 gi|308166512|gb|EFO68712.1| tyrosine recombinase XerD [Lactobacillus iners LactinV 03V1-b]
 gi|308170422|gb|EFO72446.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 2503V10-D]
 gi|325476182|gb|EGC79346.1| tyrosine recombinase XerD [Lactobacillus iners UPII 143-D]
 gi|325477831|gb|EGC80965.1| tyrosine recombinase XerD [Lactobacillus iners UPII 60-B]
 gi|328934612|gb|EGG31116.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 1401G]
          Length = 296

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 166/307 (54%), Gaps = 20/307 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L+  +IERGLS  TL SY  D    L + +F     IT   +  L    I +F+++ 
Sbjct: 6   EDYLRFAQIERGLSNNTLLSYRQD---LLEYFSFLKSLGITTWEVDALI---IDSFLAQE 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R +     S+ R LS ++ F ++L ++ +  +  +L + + KK   LP AL+  +   L+
Sbjct: 60  RDKGKAIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPTALSTTEVTKLI 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +         T  +  R+ AIL  LY  G+R+SE ++L   +I ++   +++ GKG K R
Sbjct: 120 N-----MPDTTTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQR 174

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           ++P+  +V  + ++ Y +   +  L      +  +F   RG  +      + I++  +  
Sbjct: 175 LIPI-SNVAMSWIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLA 233

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+  + T HTLRH+FATHLL NG DLR +Q ILGH  +STTQIYTN+  K+    +M++Y
Sbjct: 234 GINKNVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKH----IMDVY 289

Query: 315 DQTHPSI 321
            +THP I
Sbjct: 290 KRTHPRI 296


>gi|283768283|ref|ZP_06341195.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa
           W1219]
 gi|283104675|gb|EFC06047.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa
           W1219]
          Length = 297

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 103/305 (33%), Positives = 157/305 (51%), Gaps = 17/305 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI-RAF 74
           K  +++L  + + R  S  T ++Y  D   F+ +L     EK  I T +++    +   F
Sbjct: 5   KSLKSFLDYIRLARTGSLHTEKAYRRDVENFIAYL-----EKKKIHTWKRVDKNFLLEYF 59

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
            + R+   + + S  R LS ++SF +YL   +    + + + +N+K S  LP  L   Q 
Sbjct: 60  TTLRQKNHLSNSSYDRHLSSLRSFFRYLNVVEGIGHNPMSSFKNVKTSRPLPEYLTVDQV 119

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D+  L    + K +  RN  I+ LLY CGLRISE  ++  Q+I      +R+ GK 
Sbjct: 120 QDLLDSFDLE---DKKGL--RNRCIVELLYACGLRISECANIKIQDIHFRDYYVRVMGKE 174

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K RIVP    +   + +Y  L  +     +  P F+G +GK ++    Q  + +  R L
Sbjct: 175 SKERIVPFYKELGDLLTKY--LKKYGSFSQLSDPFFKGSKGKAISVRSIQLLLEKKGREL 232

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            LP     H LRHSFATHLL NG DLR +QS+LGH  LSTTQIYT+V+     D +  + 
Sbjct: 233 KLPFQLHPHVLRHSFATHLLDNGADLRIVQSLLGHENLSTTQIYTHVSQ----DTLRRVI 288

Query: 315 DQTHP 319
            +THP
Sbjct: 289 AETHP 293


>gi|91774554|ref|YP_544310.1| tyrosine recombinase XerC subunit [Methylobacillus flagellatus KT]
 gi|91708541|gb|ABE48469.1| tyrosine recombinase XerC subunit [Methylobacillus flagellatus KT]
          Length = 291

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 162/306 (52%), Gaps = 19/306 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L+ L+ ERGLS LT++ Y  D     + L F  +  + +     L  + IR FI+  
Sbjct: 5   QRYLEYLQFERGLSLLTVKHYRRD-----LELLFDLKSGMALDA---LQPSHIRRFIATL 56

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +  +++ R LSG + F  YL KR   T +   +MR  K   SLP+AL   QA+ LV
Sbjct: 57  HGRGLSGKTIARHLSGWRGFFDYLVKRHGATCNPCHDMRAPKSPKSLPKALAIDQAVQLV 116

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D            +  R+ AIL L Y  GLR+SE   L   ++   + T+++ GKG K R
Sbjct: 117 D------MKGEDVLSIRDKAILELFYSSGLRLSEVTGLNIGDLNLHEGTVKVLGKGSKSR 170

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVP+     +A+ ++  +    ++ + Q  +F    G+ ++    Q  I+Q     G+  
Sbjct: 171 IVPIGRHAIQAMQDWLAVRQPAISSDEQ-AVFLNRNGRRISGRAIQYRIKQWAIRRGISS 229

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           +   H LRHSFA+H+L + GDLR++Q +LGH  +STTQ+YT+++ ++    + ++YD  H
Sbjct: 230 NVHPHMLRHSFASHVLQSSGDLRAVQEMLGHANISTTQVYTHLDFQH----LAKVYDAAH 285

Query: 319 PSITQK 324
           P   +K
Sbjct: 286 PRARKK 291


>gi|313158817|gb|EFR58200.1| phage integrase, N-terminal SAM domain protein [Alistipes sp. HGB5]
          Length = 300

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 160/306 (52%), Gaps = 21/306 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFL----AFYTEEKITIQTIRQLSYTEIRAFI 75
            +++ L  ER  S LT+++Y+ D  QFL +L    + +    +T + IR+         I
Sbjct: 4   EFIRYLSAERRYSPLTVRNYKHDVEQFLAWLDCDESRFDPRSVTTEQIREW-------II 56

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-RNLKKSNSLPRALNEKQA 134
            +    K+   S+ R ++ +++F ++L  R    E +I  M   LK S  LP  + E + 
Sbjct: 57  FRTEEGKLSAGSMNREVASLRAFFRWLH-RTGAVEKDIFRMISTLKTSRRLPAFVPESRM 115

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
            T+V            +   RNS I+ + Y CGLR++E + +   +   D ++LR++GKG
Sbjct: 116 TTIVSEC---GPDSEDFQTERNSLIILMFYACGLRLAELVGIDRSDFSADYTSLRVRGKG 172

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           DK R+VP+L  +R+ IL Y  L    ++ ++ +  LF   +GK ++  V  R +++    
Sbjct: 173 DKQRMVPILEFLREKILHYLGLIERQNICISSEKALFLTHKGKRISRSVVYRTVQEELTR 232

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    + H LRH+FATHLL+ G D+R IQ +LGH  L  TQ+YT+    N    + EI
Sbjct: 233 AGVQGKKSPHVLRHTFATHLLNGGADMREIQELLGHASLQATQVYTH----NSIARLREI 288

Query: 314 YDQTHP 319
           Y + HP
Sbjct: 289 YAKAHP 294


>gi|110833664|ref|YP_692523.1| integrase/recombinase XerD [Alcanivorax borkumensis SK2]
 gi|110646775|emb|CAL16251.1| integrase/recombinase XerD [Alcanivorax borkumensis SK2]
          Length = 312

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 100/305 (32%), Positives = 153/305 (50%), Gaps = 20/305 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +WL    +E+GLS+ +L +Y  D  Q   +L     +++ +    +    E   F++ R 
Sbjct: 19  SWLDQQWLEKGLSEHSLSNYRRDLSQLACWL---QGQRVALLGCERYQLLE---FLAYRH 72

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q +  RS+ R LS +KSF ++LK+    +E   L +   K    LP+ L+E     L+ 
Sbjct: 73  QQGLSARSVARQLSAVKSFYRWLKREGRISEDPALLIERPKLGRPLPKTLSEADVEALLA 132

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              L T      +  R+ A+L +LY  GLR++E ++LT   +   Q  +R+ GKGDK R+
Sbjct: 133 APDLSTP-----LGLRDRAMLEVLYATGLRVTELVTLTQSQVNPRQGVIRVIGKGDKERL 187

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYL 254
           VPL       +  Y       L      P     LF   RG  +    F   I+QL    
Sbjct: 188 VPLGEEALHWLERYLREGRALLMGGAATPGNQELLFPSRRGTCMTRQTFWHRIKQLAVVA 247

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V  +     + ++Y
Sbjct: 248 GVQKKLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQQR----LQDVY 303

Query: 315 DQTHP 319
            + HP
Sbjct: 304 QKHHP 308


>gi|325285115|ref|YP_004260905.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489]
 gi|324320569|gb|ADY28034.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489]
          Length = 298

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 106/301 (35%), Positives = 160/301 (53%), Gaps = 24/301 (7%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFL--AFYTEEKITI--QTIRQLSYTEIRAFISKRRT 80
           L+IERGL + ++ +Y  D  + + FL     TE  I+I  +T +Q  Y EI A       
Sbjct: 14  LKIERGLMENSITNYVLDVEKLITFLNKKNITESPISISKETTQQFIY-EISA------- 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             I  RS  R +SG+KSF  YL       ++ +  +   K    LP  L+ ++   L+D 
Sbjct: 66  -SINPRSQARIISGLKSFFNYLIFEDYRADNPMDLIEAPKIGRKLPDTLSVEEINDLIDA 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           + L     +K    RN A+L  LYGCGLR+SE  +L   ++   +  +R+ GKGDK R V
Sbjct: 125 IDL-----SKPEGERNRAMLETLYGCGLRVSELTNLRLSDLFFKEDFIRVTGKGDKQRFV 179

Query: 201 PLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           P+    +K I  Y D     LN+    +  LF   RG+ L   +    I+QL   +GL  
Sbjct: 180 PISNINKKYINIYKDEIRNHLNIKKGFEDILFLNRRGRQLTRAMIFTIIKQLAETIGLKK 239

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + + HTLRHSFATHLL NG DLR+IQ +LGH  ++TT++Y +++ K+    + ++ +  H
Sbjct: 240 TISPHTLRHSFATHLLENGADLRAIQQMLGHESITTTEVYVHIDRKH----LSQVIENYH 295

Query: 319 P 319
           P
Sbjct: 296 P 296


>gi|77163851|ref|YP_342376.1| site-specific tyrosine recombinase XerC [Nitrosococcus oceani ATCC
           19707]
 gi|254435837|ref|ZP_05049344.1| tyrosine recombinase XerC [Nitrosococcus oceani AFC27]
 gi|76882165|gb|ABA56846.1| tyrosine recombinase XerC subunit [Nitrosococcus oceani ATCC 19707]
 gi|207088948|gb|EDZ66220.1| tyrosine recombinase XerC [Nitrosococcus oceani AFC27]
          Length = 300

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 99/313 (31%), Positives = 164/313 (52%), Gaps = 20/313 (6%)

Query: 16  KERQNWLQ----NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           +E+Q W+Q    +L+ ERGLS  T+ SY  D  + + F       +  I   ++L    +
Sbjct: 3   EEQQIWIQKFFTHLQYERGLSPQTVVSYRRDLAKAIAFCG-----RNGIGNWQELDAQRV 57

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           RA +       +  RS++R LS ++SF  YL++  I   +    +   K   +LP +L+ 
Sbjct: 58  RALVVAHHQAGLSGRSIQRLLSALRSFYVYLQRENIVDHNPAQGISAPKGKRALPPSLDV 117

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            Q   L++      +     +  R+ AIL L Y  GLR++E + L    +  D + +R+ 
Sbjct: 118 DQTAQLLN------TQPCSDLLLRDQAILELFYSSGLRLAELVGLNLSALDLDTALVRVV 171

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG K R VPL    + A+L +  +    +N + Q  +F    G+ L+P   Q+ +R   
Sbjct: 172 GKGAKTREVPLGRRAKVALLAWLPVRAGWINQS-QEAVFITRHGRRLSPRAVQKRLRLWG 230

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G  ++   H LRH+FA+HLL + GDLR++Q +LGH  +STTQIYT+++ ++    + 
Sbjct: 231 LRQGFDVAIHPHRLRHAFASHLLESSGDLRAVQELLGHADISTTQIYTHLDFQH----LA 286

Query: 312 EIYDQTHPSITQK 324
           +IYDQTHP   +K
Sbjct: 287 KIYDQTHPRARKK 299


>gi|332799335|ref|YP_004460834.1| Tyrosine recombinase xerC [Tepidanaerobacter sp. Re1]
 gi|332697070|gb|AEE91527.1| Tyrosine recombinase xerC [Tepidanaerobacter sp. Re1]
          Length = 295

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 100/303 (33%), Positives = 162/303 (53%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N+LQ L +E+GL+K T+ +Y  D + ++ +L     +KIT   I   + + I +++   
Sbjct: 6   ENFLQYLSVEKGLAKNTIDAYRRDLKSYIYYLK---TKKIT--NINSTNRSTIASYLLLM 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +       S+ R+ + IKSF ++L    I +E   +N+   K    LP+ L+ ++     
Sbjct: 61  QKNGKASSSISRACAAIKSFYQFLFMEHIISEDPTVNLDAPKLEQRLPKVLSVEEI---- 116

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL        +  R+ ++L LLY  G+R+SE +S++ +++  +   LR  GKG K R
Sbjct: 117 -EKLLCQPDMANPLGIRDRSMLELLYATGMRVSELISISVEDVNLEMGFLRCVGKGSKER 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           IVP+  S+    L+ Y L   +  LN +    LF   +G  +    F + I++  +  G+
Sbjct: 176 IVPI-GSIAVKYLKLYTLDARNKILNGKKSKILFLNRQGSAMTRQGFWKIIKKYSQQAGI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               T HT RHSFATHLL NG DLR +Q ILGH  +STTQIYT++      + + E+YD 
Sbjct: 235 NKKITPHTFRHSFATHLLENGADLRVVQEILGHSDISTTQIYTHITR----NKIKEVYDN 290

Query: 317 THP 319
           THP
Sbjct: 291 THP 293


>gi|329571616|gb|EGG53297.1| tyrosine recombinase XerC [Enterococcus faecalis TX1467]
          Length = 298

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 98/322 (30%), Positives = 163/322 (50%), Gaps = 29/322 (9%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ME  N PE+ +  L+           +ERG S+ T ++Y+ D + F  FL     + +T+
Sbjct: 1   MEEKNWPELFARYLI-----------VERGYSEKTKKAYQEDIQHFFSFLKTSGNDYLTV 49

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           + +      ++RA++S+   Q+    S+ R ++ ++SF ++L K +   E+    +   K
Sbjct: 50  EHL------DVRAYLSELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKK 103

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K   LPR   EK+      + L  ++   + +D RN A+L +LYG G+R+SE  +LT   
Sbjct: 104 KQLRLPRFFYEKEM-----DALFESAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDA 158

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKP 237
           +    S L + GKG+K R VP     + A+ +Y +     L    Q     +F    G+ 
Sbjct: 159 VDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENSRALLMTKYQKKHPYVFVNHHGEQ 218

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           + P   +  + QL +   L      H LRH+FATHLL+NG D+R++Q +LGH  LSTTQI
Sbjct: 219 ITPTGIEYVLNQLIKKSSLNAEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQI 278

Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319
           Y +V  ++    + + Y   HP
Sbjct: 279 YAHVTKES----LQKNYRTFHP 296


>gi|312872390|ref|ZP_07732460.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2062A-h1]
 gi|312873969|ref|ZP_07734005.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2052A-d]
 gi|312875440|ref|ZP_07735443.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2053A-b]
 gi|311088951|gb|EFQ47392.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2053A-b]
 gi|311090518|gb|EFQ48926.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2052A-d]
 gi|311092213|gb|EFQ50587.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2062A-h1]
          Length = 296

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 166/307 (54%), Gaps = 20/307 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L+  +IERGLS  TL SY  D    L + +F     IT   +  L    I +F+++ 
Sbjct: 6   EDYLRFAQIERGLSNNTLLSYRQD---LLEYFSFLKSLGITTWEVDALI---IDSFLAQE 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R +     S+ R LS ++ F ++L ++ +  +  +L + + KK   LP AL+  +   L+
Sbjct: 60  RDKGKAIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPIALSTTEVTKLI 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +         T  +  R+ AIL  LY  G+R+SE ++L   +I ++   +++ GKG K R
Sbjct: 120 N-----MPDTTTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQR 174

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           ++P+  +V  + ++ Y +   +  L      +  +F   RG  +      + I++  +  
Sbjct: 175 LIPI-SNVAMSWIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLA 233

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+  + T HTLRH+FATHLL NG DLR +Q ILGH  +STTQIYTN+  K+    +M++Y
Sbjct: 234 GINKNVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKH----IMDVY 289

Query: 315 DQTHPSI 321
            +THP I
Sbjct: 290 KRTHPRI 296


>gi|288555956|ref|YP_003427891.1| integrase/recombinase [Bacillus pseudofirmus OF4]
 gi|288547116|gb|ADC50999.1| integrase/recombinase [Bacillus pseudofirmus OF4]
          Length = 295

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 161/305 (52%), Gaps = 15/305 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K+   +L  ++IERGL++ T+QSY  D   +  FL    +  I IQT + ++   I  ++
Sbjct: 3   KDVSEFLHYIQIERGLAENTIQSYRRDLLNYAKFL----QNVIDIQTFKDVTRHMIVDYL 58

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
              + Q   + ++ R+++ I++F ++L + K++ +   +++   K S  LP+ L+ ++  
Sbjct: 59  FFLKEQGRAEATIARTIASIRAFHQFLLREKLSEQDPSVHLDIPKASKRLPKVLSLEEVE 118

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+      T      +  RN A++  LY  G+R+SE ++L   +       +R  GKG+
Sbjct: 119 ALL------TISGQDHLSIRNRAMMETLYATGMRVSELINLKLTDTHLSMGFVRCIGKGN 172

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K RI+PL     KA+  Y +      L  N    +F    G+PL    F + +++L    
Sbjct: 173 KERIIPLGQQATKALQLYLEQARSTMLKKNRHEYVFVNHYGRPLTRQGFWKIVKKLAEAA 232

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        M ++Y
Sbjct: 233 KIEKELTPHTLRHSFATHLLENGADLRAVQEMLGHVDISTTQIYTHVTKTR----MKDVY 288

Query: 315 DQTHP 319
            Q HP
Sbjct: 289 AQYHP 293


>gi|269792633|ref|YP_003317537.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100268|gb|ACZ19255.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 297

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 163/302 (53%), Gaps = 25/302 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L+ L +ER  S  T Q+Y  D  +++ F A    + +  +         +  F++  
Sbjct: 15  ESFLEYLSLERAFSPNTCQAYRRDLSKYVSFCAERGRDPVPPEV------DTVSLFLASL 68

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R+Q     S++R+ + IKSF ++L +  +  +   + M    K + +P  L E + L L+
Sbjct: 69  RSQGAAKSSVQRAAACIKSFSRFLGE--VGEDPGKVPMLP-DKPSPMPAILTEGEVLRLL 125

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +     T+ +    D R+ A++ LLYGCGLR SE  SLT +++     T+R++GKGDK+R
Sbjct: 126 EA----TAGDAPG-DLRDRAMIELLYGCGLRASELCSLTMKDLDLSSGTVRVRGKGDKVR 180

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++PL+   R A+  Y       +    Q P+F+G RG P    +  + I++  R   +  
Sbjct: 181 VLPLVGETRSALERY-----LKVRGTHQGPIFQGDRGGPFRREMLWKMIQRRGRQACIAA 235

Query: 259 STT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           S    H LRHS ATHLL  G DLR++Q +LGH  + TT++YT+ + +     + ++YD++
Sbjct: 236 SRLHPHILRHSCATHLLRRGMDLRTLQCLLGHSSVRTTEVYTHFDLE-----LRDVYDRS 290

Query: 318 HP 319
           HP
Sbjct: 291 HP 292


>gi|257887688|ref|ZP_05667341.1| phage integrase [Enterococcus faecium 1,141,733]
 gi|257823742|gb|EEV50674.1| phage integrase [Enterococcus faecium 1,141,733]
          Length = 301

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 102/310 (32%), Positives = 160/310 (51%), Gaps = 27/310 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L+ L +ERG S+ T ++YE D   F  FL     E+     + +  Y  +R ++S  
Sbjct: 8   QKFLRYLIVERGYSEKTKEAYEEDILHFKHFL-----EESGDADLLKAEYFTVRVYLSAL 62

Query: 79  RTQK--IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNEKQAL 135
              +      S+ R ++ ++SF +YL K ++  E N  +  +LKK N  LPR   E +  
Sbjct: 63  ADHRPSYSRNSISRKIASLRSFYQYLLKEEVIKE-NPFSYVHLKKKNLRLPRFFYENEMQ 121

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L D+V   ++     +D RN A+L +LYG G+R+SE  +L   +I  D   + I GKG+
Sbjct: 122 ALFDSVAGDST-----LDLRNRALLEVLYGSGIRLSECSNLLVSDIDFDSEVMLIHGKGN 176

Query: 196 KIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           K R  PL    + A+ EY+       +  +    +I   +F    GKP+ P   +  + Q
Sbjct: 177 KERYAPLGSFAQDALQEYFTEGRQVLMTKYHEEHDI---VFVNHHGKPITPTGIEYVLNQ 233

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           + +   L      H LRH+FATHLL+NG DLR++Q +LGH  LSTTQIY +V  ++    
Sbjct: 234 IIKKSSLDSDIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKES---- 289

Query: 310 MMEIYDQTHP 319
           + + Y   HP
Sbjct: 290 LQKNYRSFHP 299


>gi|259500665|ref|ZP_05743567.1| integrase/recombinase XerD [Lactobacillus iners DSM 13335]
 gi|259168049|gb|EEW52544.1| integrase/recombinase XerD [Lactobacillus iners DSM 13335]
          Length = 297

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 97/307 (31%), Positives = 165/307 (53%), Gaps = 20/307 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L+  +IERGLS  TL SY  D    L + +F     IT   +  L    I +F ++ 
Sbjct: 7   EDYLRFAQIERGLSNNTLLSYRQD---LLEYFSFLKSLGITTWEVDALI---IDSFFAQE 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R +     S+ R LS ++ F ++L ++ +  +  +L + + KK   LP A++  +   L+
Sbjct: 61  RDKGKAIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPTAMSTTEVTKLI 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +         T  +  R+ AIL  LY  G+R+SE ++L   +I ++   +++ GKG K R
Sbjct: 121 N-----MPDTTTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQR 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           ++P+  +V  + ++ Y +   +  L      +  +F   RG  +      + I++  +  
Sbjct: 176 LIPI-SNVAMSWIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLA 234

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+  + T HTLRH+FATHLL NG DLR +Q ILGH  +STTQIYTN+  K+    +M++Y
Sbjct: 235 GINKNVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKH----IMDVY 290

Query: 315 DQTHPSI 321
            +THP I
Sbjct: 291 KRTHPRI 297


>gi|300173433|ref|YP_003772599.1| tyrosine recombinase XerD [Leuconostoc gasicomitatum LMG 18811]
 gi|299887812|emb|CBL91780.1| tyrosine recombinase XerD [Leuconostoc gasicomitatum LMG 18811]
          Length = 298

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 96/301 (31%), Positives = 160/301 (53%), Gaps = 16/301 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  + IERGLS  T++SY  D +QF +++   T EK+ +  I  ++   I  +++  R
Sbjct: 11  DYLHYIRIERGLSDNTIKSYHQDLQQFALYV---TTEKLQLNDIDHIA---ILTWLNNLR 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q   + S+ R ++ ++ F  YL +  +   + + ++R  KK+  LP  L   +      
Sbjct: 65  EQGKSNNSVIRMVTSLRKFFGYLLQEGLILHNPMTDVRPPKKAEHLPSVLTVAEI----- 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           + LL    ET  +  RN  ++ +LY  GLR+SE ++L   ++      ++  GKGDK RI
Sbjct: 120 DALLAVPTETTPLGVRNRTLIEVLYATGLRVSELVNLKMSDLHLQLGLIQTIGKGDKERI 179

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +P+       + +Y+      L    + P +F   RG  L+     + I++L    G+  
Sbjct: 180 IPIGEVAADWLEKYFSNSRLLLLKGNESPFVFLNDRGNQLSRQGVWKIIKKLVLLAGITK 239

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HTLRHSFATH+L NG DLR +Q +LGH  +STTQIYT+++ K     + E+YD  H
Sbjct: 240 DVSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKR----LSEVYDNFH 295

Query: 319 P 319
           P
Sbjct: 296 P 296


>gi|77919114|ref|YP_356929.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380]
 gi|77545197|gb|ABA88759.1| tyrosine recombinase XerD subunit [Pelobacter carbinolicus DSM
           2380]
          Length = 295

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 103/300 (34%), Positives = 153/300 (51%), Gaps = 15/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +E+GLS  TL +Y  D  ++L FL+        +  + Q+S   + AF+S  + 
Sbjct: 8   FLNYLVVEKGLSANTLDAYGRDLARYLEFLSVKG-----VTGLEQVSPPMVVAFLSALKE 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  RS  R L  ++ F ++L    + T +    +   K    LP+ L   +       
Sbjct: 63  RGLSARSRARKLVSLRMFHRFLLAENLATTNPAAQVAAPKSFAKLPQILTPDEV-----E 117

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL     T   D R+ A+L +LY  GLR+SE + LT Q++  D   L   GK  K RIV
Sbjct: 118 SLLSAPGNTTCFDLRDKAMLEILYATGLRVSELVGLTLQDLQLDVGYLTAFGKRAKQRIV 177

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           PL  + R+A+LEY      +L   +    LF    G  L    F + +++     G+  +
Sbjct: 178 PLGDAAREAVLEYLSHGRGELAGEVGSGFLFLNRSGNGLTRQGFWKMMKRRAMEAGINKN 237

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T HTLRHSFATHLL NG DLR++Q++LGH  +STTQIYT+V  +     M  I+ Q HP
Sbjct: 238 ITPHTLRHSFATHLLDNGADLRAVQAMLGHADISTTQIYTHVTRER----MKVIHQQHHP 293


>gi|169827113|ref|YP_001697271.1| tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41]
 gi|168991601|gb|ACA39141.1| Tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41]
          Length = 299

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 158/302 (52%), Gaps = 15/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + ++  +++E+  S  T++ YE D   FL FL     ++  I  +  + Y   R +++K 
Sbjct: 10  EQFMLYIQVEKNFSVHTVREYESDLLDFLAFL-----QREGINDLASVEYIHARLYVTKL 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +K    S+ R +S I+SF ++L ++    +    ++ + KK + LP    E++ + L 
Sbjct: 65  YDEKRARASISRKISSIRSFFRFLNRQYGFDDGAFRSLYHPKKESRLPNFFYEEELMQLF 124

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D    +T  + K +  RN AIL LLY  G+R+SE  S+  +++    S +R+ GKG K R
Sbjct: 125 DA---NTGDDLKSL--RNMAILELLYATGIRVSELTSIQVKDVDFHYSIIRVMGKGRKER 179

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           I+P       A+L+Y +   P  +       LF  +RG  L P   +  + ++     L 
Sbjct: 180 IIPFGQFASLAMLDYIEQARPRLMKKTNHQQLFVNMRGGELTPRGVRHVLNEMIDKASLH 239

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRH+FATHLL+NG DLR++Q +LGH  LS+TQ+YT+V  ++    + + Y   
Sbjct: 240 TKIYPHMLRHTFATHLLNNGADLRTVQELLGHSHLSSTQVYTHVTKEH----LRQTYMNA 295

Query: 318 HP 319
           HP
Sbjct: 296 HP 297


>gi|254481807|ref|ZP_05095050.1| tyrosine recombinase XerD [marine gamma proteobacterium HTCC2148]
 gi|214037936|gb|EEB78600.1| tyrosine recombinase XerD [marine gamma proteobacterium HTCC2148]
          Length = 298

 Score =  145 bits (367), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 106/306 (34%), Positives = 161/306 (52%), Gaps = 19/306 (6%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E + ++  + +E+GLS  TL SY  D RQF  +LA  +++   I T R     E++A++ 
Sbjct: 7   EIERYIDAMWMEKGLSDNTLSSYRRDLRQFNDWLA-KSKKSSVISTDR----AELQAYLG 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            R  Q    RS  R +S  + F KYL +    T    L++ + K    LPR+L+E     
Sbjct: 62  ARLQQGQSQRSTARFMSCARGFYKYLLREGRLTVDPTLDVDSPKLGRPLPRSLSEGDVDK 121

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+D   L  +     ++ R+  +L +LY CGLR+SE   L    I  +Q  +R+ GKG K
Sbjct: 122 LLDAPDLDIA-----LEYRDRTMLEMLYACGLRVSELTGLQINQISINQGVVRVFGKGSK 176

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRY 253
            R+VP+      A L+ Y   P    L   +P   +F   RG+ +    F   I+   + 
Sbjct: 177 ERLVPMGEEA-LAWLQGYLAGP-RAELLKGIPSDVVFPSKRGRQMTRQTFWYRIKIYAKR 234

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+  + + HTLRH+FATHLL++G DLR +Q +LGH  L+TTQIYT+V  +     M E+
Sbjct: 235 AGIKQNLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLTTTQIYTHVAKQR----MQEL 290

Query: 314 YDQTHP 319
           + Q HP
Sbjct: 291 HAQHHP 296


>gi|302191354|ref|ZP_07267608.1| tyrosine recombinase XerD [Lactobacillus iners AB-1]
 gi|312871387|ref|ZP_07731482.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 3008A-a]
 gi|311093040|gb|EFQ51389.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 3008A-a]
          Length = 296

 Score =  145 bits (367), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 97/307 (31%), Positives = 165/307 (53%), Gaps = 20/307 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L+  +IERGLS  TL SY  D    L + +F     IT   +  L    I +F ++ 
Sbjct: 6   EDYLRFAQIERGLSNNTLLSYRQD---LLEYFSFLKSLGITTWEVDALI---IDSFFAQE 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R +     S+ R LS ++ F ++L ++ +  +  +L + + KK   LP A++  +   L+
Sbjct: 60  RDKGKAIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPTAMSTTEVTKLI 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +         T  +  R+ AIL  LY  G+R+SE ++L   +I ++   +++ GKG K R
Sbjct: 120 N-----MPDTTTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQR 174

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           ++P+  +V  + ++ Y +   +  L      +  +F   RG  +      + I++  +  
Sbjct: 175 LIPI-SNVAMSWIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLA 233

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+  + T HTLRH+FATHLL NG DLR +Q ILGH  +STTQIYTN+  K+    +M++Y
Sbjct: 234 GINKNVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKH----IMDVY 289

Query: 315 DQTHPSI 321
            +THP I
Sbjct: 290 KRTHPRI 296


>gi|262089688|gb|ACY24783.1| XerD tyrosine recombinase [uncultured organism]
          Length = 323

 Score =  145 bits (367), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 101/315 (32%), Positives = 158/315 (50%), Gaps = 19/315 (6%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +P +   +L+ E   +L  + +E+GLS  T +SY  D  QF ++L     + I +     
Sbjct: 25  VPTVADSQLIAE---YLDAIWMEKGLSHNTQESYRRDLSQFAMWLNQQGRQLIGVDPALV 81

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
             Y +IR        QK+  R+  R LS ++   +YL +    +ES +  + N K S SL
Sbjct: 82  QDYLDIRL------QQKLSSRTSARFLSCVRGLYRYLLRESRISESPVALIDNPKLSRSL 135

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P++L+E          LL     +  +  R+  +L +LY CGLR++E + LT   I   Q
Sbjct: 136 PKSLSETDV-----EALLAAPDLSDPVGLRDRTMLEVLYACGLRVTELVELTMPQINLRQ 190

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           + +R+ GKG K R++P+       ++ Y  +  P  LN      +F   R +P+    F 
Sbjct: 191 NVVRVMGKGSKERLIPMGEEAAAWLVRYLREARPVLLNNMPDEVVFPSTRAQPMTRQTFW 250

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             I+      G+    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V   
Sbjct: 251 YRIKHWAMVAGIKKDLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKL 310

Query: 305 NGGDWMMEIYDQTHP 319
                M + + Q HP
Sbjct: 311 R----MKQQHAQHHP 321


>gi|257898819|ref|ZP_05678472.1| phage integrase [Enterococcus faecium Com15]
 gi|257836731|gb|EEV61805.1| phage integrase [Enterococcus faecium Com15]
          Length = 301

 Score =  145 bits (367), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 102/310 (32%), Positives = 159/310 (51%), Gaps = 27/310 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L+ L +ERG S+ T ++YE D   F  FL     E+     + +  Y  +R ++S  
Sbjct: 8   QKFLRYLIVERGYSEKTKEAYEEDILHFKHFL-----EESGDADLLKAEYFTVRVYLSAL 62

Query: 79  RTQK--IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNEKQAL 135
              +      S+ R ++ ++SF +YL K ++  E N  +  +LKK N  LPR   E +  
Sbjct: 63  ADHRPSYSRNSISRKIASLRSFYQYLLKEEVIKE-NPFSYVHLKKKNLRLPRFFYEDEMQ 121

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L D+V   +      +D RN A+L +LYG G+R+SE  +L   +I  D   + I GKG+
Sbjct: 122 ALFDSVAGDSP-----LDLRNRALLEVLYGSGIRLSECSNLLVSDIDFDSEVMLIHGKGN 176

Query: 196 KIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           K R  PL    + A+ EY+       +  +    +I   +F    GKP+ P   +  + Q
Sbjct: 177 KERYAPLGSFAQDALQEYFTEGRQVLMTKYHEEHDI---VFVNHHGKPITPTGIEYVLNQ 233

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           + +   L      H LRH+FATHLL+NG DLR++Q +LGH  LSTTQIY +V  ++    
Sbjct: 234 MIKKSSLDSDIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKES---- 289

Query: 310 MMEIYDQTHP 319
           + + Y   HP
Sbjct: 290 LQKNYRSFHP 299


>gi|293570278|ref|ZP_06681347.1| tyrosine recombinase XerC [Enterococcus faecium E980]
 gi|291609685|gb|EFF38946.1| tyrosine recombinase XerC [Enterococcus faecium E980]
          Length = 301

 Score =  145 bits (367), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 102/310 (32%), Positives = 159/310 (51%), Gaps = 27/310 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L+ L +ERG S+ T ++YE D   F  FL     E+     + +  Y  +R ++S  
Sbjct: 8   QKFLRYLIVERGYSEKTKEAYEEDILHFKHFL-----EESGDADLLKAEYFTVRVYLSAL 62

Query: 79  RTQK--IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNEKQAL 135
              +      S+ R ++ ++SF +YL K ++  E N  +  +LKK N  LPR   E +  
Sbjct: 63  ADHRPSYSRNSISRKIASLRSFYQYLLKEEVIKE-NPFSYVHLKKKNLRLPRFFYENEMQ 121

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L D+V   +      +D RN A+L +LYG G+R+SE  +L   +I  D   + I GKG+
Sbjct: 122 ALFDSVAGDSP-----LDLRNRALLEVLYGSGIRLSECSNLLVSDIDFDSEVMLIHGKGN 176

Query: 196 KIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           K R  PL    + A+ EY+       +  +    +I   +F    GKP+ P   +  + Q
Sbjct: 177 KERYAPLGSFAQDALQEYFTEGRQVLMTKYHEEHDI---VFVNHHGKPITPTGIEYVLNQ 233

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           + +   L      H LRH+FATHLL+NG DLR++Q +LGH  LSTTQIY +V  ++    
Sbjct: 234 MIKKSSLDSDIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKES---- 289

Query: 310 MMEIYDQTHP 319
           + + Y   HP
Sbjct: 290 LQKNYRSFHP 299


>gi|227503694|ref|ZP_03933743.1| site-specific tyrosine recombinase XerD [Corynebacterium accolens
           ATCC 49725]
 gi|227075730|gb|EEI13693.1| site-specific tyrosine recombinase XerD [Corynebacterium accolens
           ATCC 49725]
          Length = 296

 Score =  145 bits (367), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 98/301 (32%), Positives = 148/301 (49%), Gaps = 15/301 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q WL +L +ERG+S  TL +Y  D R+++ +LA        +Q +RQ++   + A++   
Sbjct: 9   QTWLNHLAVERGVSANTLSNYRRDIRRYVDWLAVNE-----VQDLRQVTRPMVEAYLKDL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R + +   S  R+L   +   K+              +        LP  L+  +   L+
Sbjct: 64  R-ETMAVSSANRALIVARGLHKFAVAEGEIDSDVAAEVSPPSTGQHLPETLSVDEVTQLI 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +     T  ET  +D R+ A+L +LYG G RISE +SL   ++      L + GKGDK R
Sbjct: 123 EA----TPTETP-VDLRDRALLEVLYGTGARISEVISLNVDDVATGDDVLVLHGKGDKER 177

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VPL    R+AI  Y       L       LF   RG  L+       I+   +   L  
Sbjct: 178 LVPLGSHARQAIDAYLVRARPVLGKGKTAALFLNTRGGALSRQSAWSIIKTAAQRSQLDK 237

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           S + HTLRHSFATHLL  G D+R++Q +LGH  ++TTQIYT+V +    D + E++   H
Sbjct: 238 SISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTA----DSLREVWRTAH 293

Query: 319 P 319
           P
Sbjct: 294 P 294


>gi|192360546|ref|YP_001981926.1| tyrosine recombinase XerD [Cellvibrio japonicus Ueda107]
 gi|190686711|gb|ACE84389.1| tyrosine recombinase XerD [Cellvibrio japonicus Ueda107]
          Length = 299

 Score =  145 bits (367), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 102/282 (36%), Positives = 151/282 (53%), Gaps = 13/282 (4%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L  L +E+GLS+ T +SY  D  QF  +LA      +   T      TE++A+++ R  Q
Sbjct: 13  LDQLWMEKGLSENTQESYRRDLEQFAGWLAAGQGPDLLAVTA-----TEVQAYLAWRHQQ 67

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-RNLKKSNSLPRALNEKQALTLVDN 140
            +  RS  R LS ++ F + L+ R+     N L +  N K S SLP++L+E      V+N
Sbjct: 68  HLSSRSTARFLSCLRGFYR-LQIREGHLHDNPLALVENPKLSRSLPKSLSESD----VEN 122

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL        +  R+  +L +LY CGLR+SE + LT   +   Q+ +R+ GKG K R+V
Sbjct: 123 -LLSAPDVDDPVGLRDKTMLEVLYACGLRVSELVGLTMSQVNLRQNVVRVMGKGSKERLV 181

Query: 201 PLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+       +  Y  +  P  LN      +F   RG+P+    F   I+   +  G+   
Sbjct: 182 PMGEEAAAWLQRYLREARPVLLNNFPDEVVFPSSRGQPMTRQTFWYRIKHWAQVAGINKP 241

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V
Sbjct: 242 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHV 283


>gi|260062440|ref|YP_003195520.1| putative tyrosine recombinase [Robiginitalea biformata HTCC2501]
 gi|88784003|gb|EAR15174.1| putative tyrosine recombinase [Robiginitalea biformata HTCC2501]
          Length = 300

 Score =  145 bits (367), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 104/302 (34%), Positives = 161/302 (53%), Gaps = 16/302 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L +ERGLS+ +++SY  D R+   +LA   E  IT ++I +    +I AFI    
Sbjct: 9   DYLHYLRLERGLSENSVRSYRRDVRKLAGYLA-ENEPGITPKSIDR---KDIEAFIHHVG 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           T  +  RS  R +SG+K F  YL    I       N  +L ++  L R L +  ++  +D
Sbjct: 65  TD-LKARSQARLISGLKGFFGYL----IFEGYRKDNPMDLIEAPKLGRKLPDTLSVEEID 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            ++          + RN AIL  LYGCGLR+SE L L   ++  D+  +++ GKG K R 
Sbjct: 120 RLVAEIDRSAPEGE-RNLAILETLYGCGLRVSELLGLRLSDLFFDEGFIKVTGKGSKDRF 178

Query: 200 VPLLPSVRKAILEYY-DLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           VP+ P  R+ IL Y  ++ P        +  +F   RG+ L+  +    IR L    GL 
Sbjct: 179 VPIGPYNRECILRYIREVRPHQQPQAGFEDVVFLNRRGRGLSRAMIFTIIRDLAARAGLR 238

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + + HT RHSFATHLL NG D+R+IQ +LGH  ++TT++Y +V+  +    + E+  + 
Sbjct: 239 KNVSPHTFRHSFATHLLQNGADIRAIQQMLGHESITTTEVYMHVDRTH----LAEVVREH 294

Query: 318 HP 319
           HP
Sbjct: 295 HP 296


>gi|25028109|ref|NP_738163.1| site-specific tyrosine recombinase XerD [Corynebacterium efficiens
           YS-314]
 gi|259507166|ref|ZP_05750066.1| tyrosine recombinase XerD [Corynebacterium efficiens YS-314]
 gi|34222804|sp|Q7ZAN4|XERD_COREF RecName: Full=Tyrosine recombinase xerD
 gi|23493393|dbj|BAC18363.1| putative integrase/recombinase [Corynebacterium efficiens YS-314]
 gi|259165247|gb|EEW49801.1| tyrosine recombinase XerD [Corynebacterium efficiens YS-314]
          Length = 304

 Score =  145 bits (367), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 148/306 (48%), Gaps = 16/306 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + WL +L +ERGLS  TL SY  D  ++  +L     E   I  I +++   + A++   
Sbjct: 8   RTWLTHLAVERGLSSNTLSSYRRDIERYCDWL-----EAARIGDISEIATATVEAYVMDL 62

Query: 79  RTQKIGDRSLKRSLSG-----IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           R    G   L  S +G     ++   K+     +       ++        LP  L+  +
Sbjct: 63  RRGVDGRAPLSASSAGRALIVVRGLHKFALAEGLVGVDVAADVSPPSTGRHLPDTLSVPE 122

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
             TL+D +   TS     +D R+ A+L +LYG G RISEA+ L   ++      LRI GK
Sbjct: 123 VETLIDAI--PTSDIATPVDIRDRALLEVLYGTGARISEAVGLMVDDVTHTPEVLRITGK 180

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R+VP     R A+ +Y       L+      LF   RG PL+       +++    
Sbjct: 181 GSKQRMVPYGSMARAAVDDYLVRARPALSKGRTPVLFLNQRGGPLSRQSAWAALKKAAGR 240

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT+V ++N    + ++
Sbjct: 241 AGIAKDISPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTHVTAEN----LRQV 296

Query: 314 YDQTHP 319
           +   HP
Sbjct: 297 WRSAHP 302


>gi|308174137|ref|YP_003920842.1| site-specific tyrosine recombinase [Bacillus amyloliquefaciens DSM
           7]
 gi|307607001|emb|CBI43372.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus amyloliquefaciens DSM 7]
 gi|328554079|gb|AEB24571.1| site-specific tyrosine recombinase XerD [Bacillus amyloliquefaciens
           TA208]
 gi|328912472|gb|AEB64068.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus amyloliquefaciens LL3]
          Length = 296

 Score =  145 bits (367), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 158/302 (52%), Gaps = 14/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  + +ERGLS+ T+ SYE D + + +FL     E + I +   ++   I  ++   
Sbjct: 6   KDFIHYVRVERGLSQNTMMSYERDLKSYSLFLT----ETLQITSWNDVTRLHIIQYLKHL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +      ++  R L+ I+SF ++L + K   +   +++   K   +LP+ L  ++   L+
Sbjct: 62  KDSGKSGKTSARHLASIRSFHQFLLREKAADKDPSVHIETQKTERALPKVLALQEVERLL 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D   L +         R+ A+L LLY  G+R+SE + L   ++      +R  GKG K R
Sbjct: 122 DTPKLDSP-----FGLRDKAMLELLYATGIRVSEMIELKLSDVHLTMGFVRCFGKGRKER 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           IVP+  +   AI  Y +     L   N+   LF    G+ ++   F + ++++    G+ 
Sbjct: 177 IVPIGEAASHAIEAYIEKARGKLLKKNVTEALFLNHHGRQISRQGFWKNLKKIALEAGIK 236

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + ++Y Q 
Sbjct: 237 KELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKDVYKQY 292

Query: 318 HP 319
           HP
Sbjct: 293 HP 294


>gi|312951578|ref|ZP_07770474.1| tyrosine recombinase XerC [Enterococcus faecalis TX0102]
 gi|310630544|gb|EFQ13827.1| tyrosine recombinase XerC [Enterococcus faecalis TX0102]
          Length = 299

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 101/322 (31%), Positives = 162/322 (50%), Gaps = 28/322 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ME  N PE+ +  L+           +ERG S+ T ++Y+ D + F  FL   T      
Sbjct: 1   MEEKNWPELFARYLI-----------VERGYSEKTKKAYQEDIQHFFSFLK--TSGNDNY 47

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            T+  L   E+RA++S+   Q+    S+ R ++ ++SF ++L K +   E+    +   K
Sbjct: 48  LTVEHL---EVRAYLSELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKK 104

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K   LPR   EK+      + L  ++   + +D RN A+L +LYG G+R+SE  +LT   
Sbjct: 105 KQLRLPRFFYEKEM-----DALFESAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDA 159

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKP 237
           +    S L + GKG+K R VP     + A+ +Y +     L    Q     +F    G+ 
Sbjct: 160 VDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQ 219

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           + P   +  + QL +   L +    H LRH+FATHLL+NG D+R++Q +LGH  LSTTQI
Sbjct: 220 ITPTGIEYVLNQLIKKSSLNVEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQI 279

Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319
           Y +V  ++    + + Y   HP
Sbjct: 280 YAHVTKES----LQKNYRTFHP 297


>gi|237748814|ref|ZP_04579294.1| site specific integrase/recombinase [Oxalobacter formigenes OXCC13]
 gi|229380176|gb|EEO30267.1| site specific integrase/recombinase [Oxalobacter formigenes OXCC13]
          Length = 317

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 105/328 (32%), Positives = 169/328 (51%), Gaps = 36/328 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L  +R LS  T+ +Y  D  + LI LA  T+       +  LS ++IR F SK   
Sbjct: 5   YLDTLTGQRQLSDQTVINYRRDLEE-LIELANQTK-------LATLSSSDIRRFTSKLHA 56

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  RS+ R LS  + F ++L +  +T+ + + ++   KK+  LP+AL+   A+ +V +
Sbjct: 57  KGLNPRSISRKLSAWRGFYRWLIEENLTSANPVEDIHAPKKNKPLPKALSVDDAVRVVAS 116

Query: 141 VLLHTSHETKWIDAR-----NSAILYLLYGCGLRISEALSLTPQNIMD-----------D 184
               TS +      R     N A+  LLY  GLR+SE  SL    I D           +
Sbjct: 117 ----TSEKEAVEQDRATLLCNHAMFELLYSSGLRVSELTSLDIHAIKDTGYRSASWINLE 172

Query: 185 QSTLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           +  + + GKG+K RIVP+    + ++R  +L    L    L       LF   RG+ ++P
Sbjct: 173 EKEVTVTGKGNKTRIVPIGDAAVHAIRNWLLTRETLIDPSLQQEHTNALFINSRGRRISP 232

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              Q  ++     LGLP+S   H LRHSFA+H+L + GDLR++Q +LGH  +++TQIYT 
Sbjct: 233 RTVQLRLKSHANALGLPVSVHPHVLRHSFASHILQSSGDLRAVQEMLGHSSIASTQIYTA 292

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           ++ +     + ++YD  HP    K++KN
Sbjct: 293 LDFQR----LAQVYDAAHPRAKTKNEKN 316


>gi|257896182|ref|ZP_05675835.1| phage integrase [Enterococcus faecium Com12]
 gi|293377182|ref|ZP_06623390.1| tyrosine recombinase XerC [Enterococcus faecium PC4.1]
 gi|257832747|gb|EEV59168.1| phage integrase [Enterococcus faecium Com12]
 gi|292644202|gb|EFF62304.1| tyrosine recombinase XerC [Enterococcus faecium PC4.1]
          Length = 301

 Score =  145 bits (366), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 102/310 (32%), Positives = 159/310 (51%), Gaps = 27/310 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L+ L +ERG S+ T ++YE D   F  FL     E+     + +  Y  +R ++S  
Sbjct: 8   QKFLRYLIVERGYSEKTKEAYEEDILHFKHFL-----EESGDADLLKAEYFTVRVYLSAL 62

Query: 79  RTQK--IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNEKQAL 135
              +      S+ R ++ ++SF +YL K ++  E N  +  +LKK N  LPR   E +  
Sbjct: 63  ADHRPSYSRNSISRKIASLRSFYQYLLKEEVIKE-NPFSYVHLKKKNLRLPRFFYENEMQ 121

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L D+V   +      +D RN A+L +LYG G+R+SE  +L   +I  D   + I GKG+
Sbjct: 122 ALFDSVAGDSP-----LDLRNRALLEVLYGSGIRLSECSNLLVSDIDFDSEVMLIHGKGN 176

Query: 196 KIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           K R  PL    + A+ EY+       +  +    +I   +F    GKP+ P   +  + Q
Sbjct: 177 KERYAPLGSFAQDALQEYFTEGRQVLMTKYHEEHDI---VFVNHHGKPITPTGIEYVLNQ 233

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           + +   L      H LRH+FATHLL+NG DLR++Q +LGH  LSTTQIY +V  ++    
Sbjct: 234 IIKKSSLDSDIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKES---- 289

Query: 310 MMEIYDQTHP 319
           + + Y   HP
Sbjct: 290 LQKNYRSFHP 299


>gi|255325630|ref|ZP_05366727.1| tyrosine recombinase XerD [Corynebacterium tuberculostearicum
           SK141]
 gi|255297240|gb|EET76560.1| tyrosine recombinase XerD [Corynebacterium tuberculostearicum
           SK141]
          Length = 296

 Score =  145 bits (366), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 95/301 (31%), Positives = 152/301 (50%), Gaps = 15/301 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q WL +L +ERG+S  TL +Y  D R++L +L         ++ +R ++   + A++   
Sbjct: 9   QTWLNHLAVERGVSANTLSNYRRDVRRYLAWLG-----DNGVEDLRSVTRPMVEAYLKDL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R+  +   S  R+L   +   K+     +      + +        LP  L+  +   L+
Sbjct: 64  RSH-MAVSSANRALIVARGLHKFAVSEGVVDVDVAVEVTPPSTGQHLPETLSVDEVTALI 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +     T  ET  +D R+ A+L +LYG G RISE +SL   ++   Q  +R++GKGDK R
Sbjct: 123 EA----TPTETP-VDVRDRALLEMLYGTGARISEIVSLNVDDVSSAQEVIRLRGKGDKER 177

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVP+    R+A+  Y       L+      LF   RG  L+       ++   +   L  
Sbjct: 178 IVPVGSHARQALDAYLVRARPALSKGKTPALFLNTRGGALSRQSAWTVLKTAAQRAQLGK 237

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           S + HTLRHSFATHLL  G D+R++Q +LGH  ++TTQIYT+V +    D + E++   H
Sbjct: 238 SISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTA----DSLREVWRTAH 293

Query: 319 P 319
           P
Sbjct: 294 P 294


>gi|227551195|ref|ZP_03981244.1| site-specific recombinase XerD [Enterococcus faecium TX1330]
 gi|227179663|gb|EEI60635.1| site-specific recombinase XerD [Enterococcus faecium TX1330]
          Length = 314

 Score =  145 bits (366), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 102/310 (32%), Positives = 159/310 (51%), Gaps = 27/310 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L+ L +ERG S+ T ++YE D   F  FL     E+     + +  Y  +R ++S  
Sbjct: 21  QKFLRYLIVERGYSEKTKEAYEEDILHFKHFL-----EESGDADLLKAEYFTVRVYLSAL 75

Query: 79  RTQK--IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNEKQAL 135
              +      S+ R ++ ++SF +YL K ++  E N  +  +LKK N  LPR   E +  
Sbjct: 76  ADHRPSYSRNSISRKIASLRSFYQYLLKEEVIKE-NPFSYVHLKKKNLRLPRFFYENEMQ 134

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L D+V   +      +D RN A+L +LYG G+R+SE  +L   +I  D   + I GKG+
Sbjct: 135 ALFDSVAGDSP-----LDLRNRALLEVLYGSGIRLSECSNLLVSDIDFDSEVMLIHGKGN 189

Query: 196 KIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           K R  PL    + A+ EY+       +  +    +I   +F    GKP+ P   +  + Q
Sbjct: 190 KERYAPLGSFAQDALQEYFTEGRQVLMTKYHEEHDI---VFVNHHGKPITPTGIEYVLNQ 246

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           + +   L      H LRH+FATHLL+NG DLR++Q +LGH  LSTTQIY +V  ++    
Sbjct: 247 IIKKSSLDSDIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKES---- 302

Query: 310 MMEIYDQTHP 319
           + + Y   HP
Sbjct: 303 LQKNYRSFHP 312


>gi|126654062|ref|ZP_01725888.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905]
 gi|126589442|gb|EAZ83589.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905]
          Length = 299

 Score =  145 bits (366), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 157/302 (51%), Gaps = 15/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + ++  +++E+  S  T++ YE D   FL FL     +   I  +  + Y   R +++K 
Sbjct: 10  EQFMLYIQVEKNFSVHTVREYESDLLDFLAFL-----QGEGIHDLASVEYIHARLYVTKL 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +K    S+ R +S I+SF ++L ++    +    ++ + KK + LP    E++ + L 
Sbjct: 65  YDEKRARASISRKISSIRSFFRFLNRQYGFDDGAFRSLYHPKKESRLPNFFYEEELMQLF 124

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D    +T  + K +  RN AIL LLY  G+R+SE  S+  +++    S +R+ GKG K R
Sbjct: 125 DA---NTGDDLKSL--RNMAILELLYATGIRVSELTSIQVKDVDFHYSIIRVMGKGRKER 179

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           I+P       A+L+Y +   P  +       LF  +RG  L P   +  + ++     L 
Sbjct: 180 IIPFGQFASLAMLDYIEQARPRLMKKTNHQQLFVNMRGGELTPRGVRHVLNEMIDKASLH 239

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRH+FATHLL+NG DLR++Q +LGH  LS+TQ+YT+V  ++    + + Y   
Sbjct: 240 TKIYPHMLRHTFATHLLNNGADLRTVQELLGHSHLSSTQVYTHVTKEH----LRQTYMNA 295

Query: 318 HP 319
           HP
Sbjct: 296 HP 297


>gi|89898086|ref|YP_515196.1| site-specific tyrosine recombinase XerD [Chlamydophila felis
           Fe/C-56]
 gi|89331458|dbj|BAE81051.1| integrase/recombinase [Chlamydophila felis Fe/C-56]
          Length = 298

 Score =  145 bits (366), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 101/299 (33%), Positives = 153/299 (51%), Gaps = 25/299 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L ++RGLS+ ++ +Y  D   FL   A        I +I ++S   +  F+ +   ++  
Sbjct: 18  LSVDRGLSRNSISAYSQDITLFLKISA--------ITSIEEISQDSVYLFVQQLHKRQES 69

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           + +L R L  +K F ++LK+ ++     ++    + K   LP  L  K+   L+   +  
Sbjct: 70  ESTLARRLIALKVFFRFLKETELLDHPPLIEHPKIWKR--LPSVLTPKEVDALL--AIPK 125

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           TS  +  I AR+SAIL+ LY  G+R+SE   L   ++ DD   LR+ GKG K R+VPL  
Sbjct: 126 TSETSPMISARDSAILHTLYSTGIRVSELCGLCIGDVSDD--FLRVTGKGSKTRLVPLGE 183

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
              K I  Y  LCPF      Q P    LF  +RG  L      R I    + +      
Sbjct: 184 RACKTIDAY--LCPFRETFQKQRPEEHHLFLSVRGHKLERSCVWRRIHHYAKQITHK-QV 240

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           + H+LRH+FATHLL N  DLR IQ +LGH R+++T+IYT+V S    D ++E +   HP
Sbjct: 241 SPHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEIYTHVAS----DTLIENFLSHHP 295


>gi|119356400|ref|YP_911044.1| tyrosine recombinase XerC subunit [Chlorobium phaeobacteroides DSM
           266]
 gi|119353749|gb|ABL64620.1| tyrosine recombinase XerC subunit [Chlorobium phaeobacteroides DSM
           266]
          Length = 328

 Score =  145 bits (366), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 166/314 (52%), Gaps = 16/314 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQTIRQLSYTEIRAF 74
           +E + +L  L+  + +S+ T+ +Y  D  QF  F+  + E + +++    Q++   +R F
Sbjct: 19  REAERFLGYLKTSKNVSRHTITAYRNDLDQFFSFMQRHLELQHMSLFDPEQVTVASVRLF 78

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +     + +  +S+ R L+ +KSF +YL++  +   S +  +   +    +P  L E+Q 
Sbjct: 79  MGDLLQRGLQPKSIARKLASVKSFYRYLQETGVIKSSVLSLVSTPRYPRHVPGFLTEQQT 138

Query: 135 LTLV---DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
             +    D+ L  +    ++   R+ ++L +LYGCGLRISE + L P +I   Q  ++I 
Sbjct: 139 EKIFEQEDSGLFGSDDTFEF--HRDISVLEMLYGCGLRISELIDLCPDDINFLQGYVKIT 196

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP------LFRGIRGKPLNPGVFQR 245
           GKG K RIVPL     +A+ +Y+++      +N  +       +F   RGK L P + QR
Sbjct: 197 GKGQKQRIVPLGTQAAEAVRKYFEVRRNFFRINKLMDEKELNHVFVTKRGKKLYPMLVQR 256

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             ++    +        H LRH+FATHLL+NG DL+S+  +LGH  L+TT+IYT+V    
Sbjct: 257 ITKKYLMSVTEQKEKNPHLLRHTFATHLLNNGADLKSVSEMLGHSSLATTEIYTHVTFGR 316

Query: 306 GGDWMMEIYDQTHP 319
               + E+Y + HP
Sbjct: 317 ----LKEVYRKAHP 326


>gi|257876556|ref|ZP_05656209.1| phage integrase [Enterococcus casseliflavus EC20]
 gi|257810722|gb|EEV39542.1| phage integrase [Enterococcus casseliflavus EC20]
          Length = 296

 Score =  145 bits (365), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 102/305 (33%), Positives = 160/305 (52%), Gaps = 22/305 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L IERGLS+ T  SY+ D +Q+L FL     +K  +   +Q+    + +F+   +
Sbjct: 7   DYLHYLTIERGLSQNTRASYQRDLQQYLAFL-----QKKQVTQWQQIDRVIVLSFLQSLQ 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  ++ R +S ++ F +YL++ ++T    + ++ + KK   LP  L+ ++   L++
Sbjct: 62  EAGKSSATVIRMVSSLRRFHQYLRQERLTDHDPMQHIDSPKKQQKLPDTLSLQEVERLIE 121

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                T      +  R+ AIL ++Y  GLR+SE + L   ++      L+  GKGDK RI
Sbjct: 122 -----TPDTRAVLGIRDRAILEVMYATGLRVSELIGLKLNDLHLSMGLLQTTGKGDKERI 176

Query: 200 VPLLPSVRKAILEYY-DLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYL 254
           VPL     + I  Y  D  P+   L  + P    LF    G  L+     + ++ L R  
Sbjct: 177 VPLGDLAIQWIETYLSDARPY---LTRKTPDESHLFVNNHGTQLSRQGIWKNLKALVRQA 233

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+  + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT++  K     M E+Y
Sbjct: 234 GITKNVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR----MTEVY 289

Query: 315 DQTHP 319
            Q  P
Sbjct: 290 KQHFP 294


>gi|189499552|ref|YP_001959022.1| integrase family protein [Chlorobium phaeobacteroides BS1]
 gi|189494993|gb|ACE03541.1| integrase family protein [Chlorobium phaeobacteroides BS1]
          Length = 330

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/318 (30%), Positives = 172/318 (54%), Gaps = 28/318 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKRR 79
           +++ +  +R  S+ T ++Y  D  QF  FL+  +  EK     +  ++  ++R F+    
Sbjct: 20  FVEYMRAQRKYSEHTCKAYSKDITQFYEFLSLQHGGEKAADPGL--VTRIDMRLFLGFLL 77

Query: 80  TQKIGDRSLKRSLSGIKSFLKYL---KKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            + +  +S+ R L+ +KSF  YL    + K++  + ++  R    S ++P  LNE+Q  T
Sbjct: 78  KKGLQPKSIARKLASVKSFYNYLLETGRIKVSVPAQVVTPRF---SKTVPGFLNEEQTET 134

Query: 137 LVDNVLL----------HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           L D++L           +T +E ++  +R+ AIL LLYGCGLRISE + L  + +  +Q 
Sbjct: 135 LFDHILAAPQHLSGSSKNTRYEDEFTYSRDRAILELLYGCGLRISEVVHLEREQVNIEQG 194

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP--FDL---NLNIQLPLFRGIRGKPLNPG 241
            ++I GKG+K R++PL     +A+  Y+++    F +    ++    +F   +G  + P 
Sbjct: 195 FMKINGKGNKQRVLPLGSYAVEALKNYFEVKRNFFRMKKGEVSAAAYVFVTKKGIGIYPV 254

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + QR  ++    +        H LRHSFATH+L+NG DL+S+  +LGH  L+TT+IYT+V
Sbjct: 255 LVQRLTKKYLSAVTELKYKNPHALRHSFATHMLNNGADLKSVSEMLGHANLTTTEIYTHV 314

Query: 302 NSKNGGDWMMEIYDQTHP 319
                   + E+YD+ HP
Sbjct: 315 TF----GRVREVYDKAHP 328


>gi|257867648|ref|ZP_05647301.1| phage integrase [Enterococcus casseliflavus EC30]
 gi|257873977|ref|ZP_05653630.1| phage integrase [Enterococcus casseliflavus EC10]
 gi|257801731|gb|EEV30634.1| phage integrase [Enterococcus casseliflavus EC30]
 gi|257808141|gb|EEV36963.1| phage integrase [Enterococcus casseliflavus EC10]
          Length = 296

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 102/305 (33%), Positives = 160/305 (52%), Gaps = 22/305 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L IERGLS+ T  SY+ D +Q+L FL     +K  +   +Q+    + +F+   +
Sbjct: 7   DYLHYLTIERGLSQNTRASYQRDLQQYLAFL-----QKKQVTQWQQIDRVIVLSFLQSLQ 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  ++ R +S ++ F +YL++ ++T    + ++ + KK   LP  L+ ++   L++
Sbjct: 62  DAGKSSATVIRMVSSLRRFHQYLRQERLTDHDPMQHIDSPKKQQKLPDTLSLQEVERLIE 121

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                T      +  R+ AIL ++Y  GLR+SE + L   ++      L+  GKGDK RI
Sbjct: 122 -----TPDTRAVLGIRDRAILEVMYATGLRVSELIGLKLNDLHLSMGLLQTTGKGDKERI 176

Query: 200 VPLLPSVRKAILEYY-DLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYL 254
           VPL     + I  Y  D  P+   L  + P    LF    G  L+     + ++ L R  
Sbjct: 177 VPLGDLAIQWIETYLSDARPY---LTRKTPDESHLFVNNHGTQLSRQGIWKNLKALVRQA 233

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+  + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT++  K     M E+Y
Sbjct: 234 GITKNVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR----MTEVY 289

Query: 315 DQTHP 319
            Q  P
Sbjct: 290 KQHFP 294


>gi|254360931|ref|ZP_04977077.1| site-specific recombinase XerD [Mannheimia haemolytica PHL213]
 gi|261493842|ref|ZP_05990354.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261495108|ref|ZP_05991572.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|153092410|gb|EDN73473.1| site-specific recombinase XerD [Mannheimia haemolytica PHL213]
 gi|261309178|gb|EEY10417.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310444|gb|EEY11635.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 297

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/303 (33%), Positives = 155/303 (51%), Gaps = 18/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L  E GLS+ T+ SY  D  +F     +++E K  +     L + +++ F+ +R
Sbjct: 9   EQFLDTLWQEHGLSENTVASYRSDLERFS---DYFSEPKAFLS----LDHIDLQGFLGER 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R LS ++ F ++L       +   L + + K+  SLP++L+E Q + L+
Sbjct: 62  LEQGYKATSSARMLSCLRKFFRFLCLEHYRQDDPTLTLSSPKRGASLPKSLSEDQVMDLL 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D       +    I+ R+ A+L LLY  GLR++E +SL+  NI   Q  +RI GKGDK R
Sbjct: 122 D-----APNTLDPIELRDKAMLELLYATGLRVTELVSLSMDNISLKQGVVRIIGKGDKER 176

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       I E++    P  LN      +F   RG+ +    F   I+      G+ 
Sbjct: 177 LVPLGEEANYWIQEFFQYGRPILLNNQQSDVVFPSRRGQQMTRQTFWHRIKHYAVLAGID 236

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT V        +  ++ Q
Sbjct: 237 ADKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTQVAKAR----LKSLHQQ 292

Query: 317 THP 319
            HP
Sbjct: 293 FHP 295


>gi|320096216|ref|ZP_08027802.1| integrase/recombinase XerD [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319976842|gb|EFW08599.1| integrase/recombinase XerD [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 299

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 148/301 (49%), Gaps = 10/301 (3%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
             W  +L   RG S  T+++Y  D      FLAF   +         L+    RA+++  
Sbjct: 7   DQWGAHLRHSRGASAHTVRAYTAD---LAAFLAFTGTDPADPGAASALTLRAARAWLADS 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     ++ R ++ +++F  +  +  +        + + +    LPR +++ +A  L+
Sbjct: 64  VARGAARSTVSRHVAALRNFSAWAHREGLAPTDAAAALASARADQRLPRVVDQDEAAALL 123

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +      S +   +  R+ AIL L+Y  G+R+SEA SLT  +I     T+R+ GKGDK R
Sbjct: 124 ECARSRASADDP-VSVRDWAILELIYATGIRVSEACSLTTSSIDPAALTVRVLGKGDKER 182

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            VP     R A+ ++       L +     LF G +G P++P V +  I ++    G+  
Sbjct: 183 TVPFGVPARDALDQWTVRARPSLAVGTDA-LFVGAKGGPIDPRVVRAMIHRMCARAGV-R 240

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRHS ATHLL  G DLR++Q ILGH  L+TTQ YT+V++      + ++Y + H
Sbjct: 241 DIAPHGLRHSAATHLLQGGADLRAVQEILGHSSLATTQRYTHVDAGR----LSDVYRRAH 296

Query: 319 P 319
           P
Sbjct: 297 P 297


>gi|258405018|ref|YP_003197760.1| integrase family protein [Desulfohalobium retbaense DSM 5692]
 gi|257797245|gb|ACV68182.1| integrase family protein [Desulfohalobium retbaense DSM 5692]
          Length = 306

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 114/328 (34%), Positives = 171/328 (52%), Gaps = 26/328 (7%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           E + LPE V        + +L  L+ +RG S  T+++Y  D  QF   L       + + 
Sbjct: 3   EQSRLPETV--------ETFLAYLDGQRGASPATVRAYRRDLEQFEAVL---RRRGLDMD 51

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
             +Q+    ++ F +    Q +   S+ R LS ++ F ++  +R+    +   ++ N K+
Sbjct: 52  RPQQIDREAVQGFAADLHRQGLRRSSVSRKLSAVRRFFRFCLQRQWVDTNPAHSVANPKQ 111

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
               P+ L  +QAL L+D    H  ++ K    R+ A+  LLYG GLRISEAL L   +I
Sbjct: 112 EVRHPKVLTVEQALELMDT---HLPNDPKGC--RDLALAELLYGSGLRISEALQLDIDDI 166

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNP 240
              +  +R+ GKG K R+ PL    +  +  Y +       ++ Q P LF G+RGK L  
Sbjct: 167 EPGRGVVRVVGKGGKERLAPLTEPGQSRLRRYLEQR-RAFVVDPQEPALFLGLRGKRLQR 225

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               R + +L +  GLP   + H LRHSFATHLL +G DLRS+Q +LGH RLSTTQ YT+
Sbjct: 226 REANRILARLSQTAGLPEEISPHVLRHSFATHLLRSGADLRSVQELLGHSRLSTTQRYTH 285

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           ++     D +M+ YDQ HP    K KKN
Sbjct: 286 LSL----DGIMQTYDQAHP----KAKKN 305


>gi|227541999|ref|ZP_03972048.1| site-specific tyrosine recombinase XerD [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182214|gb|EEI63186.1| site-specific tyrosine recombinase XerD [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 360

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 152/308 (49%), Gaps = 21/308 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  + W+  L +ERG ++ T+ SY  D   +L F+          +++  ++ T+I AF+
Sbjct: 68  KVARQWITYLTVERGKARNTIASYRRDLASYLDFVGE--------RSLDSIAATDIEAFL 119

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                  +   S++R LS I+ F  + +   I  +    ++        LP  L+  +  
Sbjct: 120 QSLGRHGLAVTSVRRMLSTIRGFHAFARDEGIVADDVAHDITPPAMPQHLPDTLSVDEI- 178

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQG 192
               N L+ +      +  RN A+L LLYG G RISE LSL   +I   + T   L + G
Sbjct: 179 ----NTLIESQAGDSAVALRNKALLELLYGTGARISEVLSLAVDDITALEETDGILVLTG 234

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLR 251
           KGDK RIVP+    R+A+  Y       LN      LF  +RG K ++     + ++Q  
Sbjct: 235 KGDKQRIVPVGSHARQAVDAYLVRGRPQLNKGKSAALFLNVRGGKAMSRQSAWQVVKQAA 294

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+    + HTLRHSFATHLL  G D+RS+Q +LGH  ++TTQIYT++ +    D + 
Sbjct: 295 TEAGITKDISPHTLRHSFATHLLEGGADVRSVQELLGHASVTTTQIYTHITA----DSLR 350

Query: 312 EIYDQTHP 319
            ++   HP
Sbjct: 351 AMWRTAHP 358


>gi|152981264|ref|YP_001354893.1| site specific integrase/recombinase protein [Janthinobacterium sp.
           Marseille]
 gi|151281341|gb|ABR89751.1| site specific integrase/recombinase protein [Janthinobacterium sp.
           Marseille]
          Length = 319

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/316 (30%), Positives = 163/316 (51%), Gaps = 21/316 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L NL  +R L+ LT  SY  D  + L F A  ++ K T+  +   ++ +IR F ++  
Sbjct: 12  GYLDNLISQRQLAPLTTVSYRRDLLELLAF-ATASDSKATLTGV---THFQIRKFAAQLH 67

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q +  RS+ R LS  + F  +L ++   T + +  ++  K+S  LP+AL    A+ LV 
Sbjct: 68  AQGLNARSIARKLSAWRGFFTWLSEQNAITSNPVDGIKAPKRSKPLPKALAADDAVRLVA 127

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL----------TPQNIMD-DQSTL 188
                 S ++  +   N A+  LLY  GLR+SE + L          T    +D D   +
Sbjct: 128 EHAPGKSADSA-MQLCNHAMFELLYSSGLRVSELVGLDVRYAQEARYTSAGWIDFDAHEV 186

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG+K+R VP+  +   A+  +  +    + L+   PLF   RG  ++  V Q  ++
Sbjct: 187 MVTGKGNKMRTVPIGQAAMDALKAWLAVRDTLVKLDPH-PLFLSERGTRVSARVVQLRLK 245

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
              + +GLP     H LRHSFA+H+L + GDLR++Q +LGH  ++ TQIYT+++ +    
Sbjct: 246 AHGQAIGLPTDVHPHVLRHSFASHVLQSSGDLRAVQEMLGHASIAATQIYTSLDFQR--- 302

Query: 309 WMMEIYDQTHPSITQK 324
            + ++YD  HP   +K
Sbjct: 303 -LAQVYDAAHPRAKKK 317


>gi|229163028|ref|ZP_04290984.1| Tyrosine recombinase xerD [Bacillus cereus R309803]
 gi|228620434|gb|EEK77304.1| Tyrosine recombinase xerD [Bacillus cereus R309803]
          Length = 296

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 161/304 (52%), Gaps = 18/304 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  + +E+GL+K T+ SYE D + ++ +L    + K    T  +++   I  F+   
Sbjct: 6   KDFIHYMVVEKGLAKNTVVSYERDLKSYVKYLQNVEQTK----TFHEVTRLHIVNFLQHL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +      ++L R ++ I+SF ++L + +       +++   +    LP+ L+       V
Sbjct: 62  KENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLS-------V 114

Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           D V  LL T   T     R+ A+L LLY  GLR+SE ++L  +++      +R  GKG+K
Sbjct: 115 DEVEALLQTPKMTSAFGVRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNK 174

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            RI+PL     +AI +Y +    +L    +   LF    G  L+   F + +++L +   
Sbjct: 175 ERIIPLGSLATEAIQKYIEKGRRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEAN 234

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + ++Y 
Sbjct: 235 IEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKDVYK 290

Query: 316 QTHP 319
           Q HP
Sbjct: 291 QFHP 294


>gi|110598394|ref|ZP_01386667.1| Tyrosine recombinase XerD [Chlorobium ferrooxidans DSM 13031]
 gi|110340003|gb|EAT58505.1| Tyrosine recombinase XerD [Chlorobium ferrooxidans DSM 13031]
          Length = 304

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/302 (32%), Positives = 162/302 (53%), Gaps = 13/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  + IER  S+ T  SY  D  ++L+F+    +  I++++I   +  +IR FI++ 
Sbjct: 13  ESFLNYMLIERNFSENTRVSYRNDLERYLLFMQ---QNAISLESI---TPNQIREFITEL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +   SL R++S I+S  K+L   + T+ +   N+   K++  LP  L   + L L+
Sbjct: 67  YLTGLEASSLARNISAIRSLHKFLLSERTTSINPAENLHQPKQARYLPTVLTIDETLRLL 126

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +  LL       ++  R+  I+ LLY  G+R+SE +S+  QN+  +   +RI GKG K R
Sbjct: 127 EAPLLQNPQSKYFL--RDKTIVELLYATGVRVSELISIQQQNLYLEAGFVRIFGKGSKER 184

Query: 199 IVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+  +  + I  Y       L+  N    LF   RGKPL+       +RQ     G+ 
Sbjct: 185 LVPVGSAATEWITRYQRELRQGLSGRNSGDYLFLNARGKPLSRMAIFSMVRQYAIIAGIE 244

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + HT RH+FATHLL  G DLR++Q +LGH  +STTQIYT+++      ++ E++   
Sbjct: 245 KQISPHTFRHTFATHLLEGGADLRAVQEMLGHSSISTTQIYTHIDR----SFVKEVHKTF 300

Query: 318 HP 319
           HP
Sbjct: 301 HP 302


>gi|332312396|gb|EGJ25491.1| Tyrosine recombinase xerD [Listeria monocytogenes str. Scott A]
          Length = 302

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 162/309 (52%), Gaps = 27/309 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  L +ERGLS  T+++YE D R F+     Y +    +     L  ++I  F++  
Sbjct: 11  EDFLHFLIVERGLSANTIKAYERDLRYFVS----YMDVAKGLTDPNTLERSDIVGFMAFA 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R +    RS+ R ++ ++SF  YL      +   ++ +   K++  LP+ LN       +
Sbjct: 67  RQEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLN-------L 119

Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           D+V  LL +S  +  +  R+ A++ +LY  GLR++E +SL   ++      ++  GKGDK
Sbjct: 120 DDVEKLLSSSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDK 179

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI------RGKPLNPGVFQRYIRQL 250
            RI+PL  +    + +Y +    +    ++ P +R         G+ L    F + ++ +
Sbjct: 180 ERIIPLGKTATTVLEKYLE----EARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGI 235

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  G+    T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT+V        +
Sbjct: 236 AKESGIEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLR----L 291

Query: 311 MEIYDQTHP 319
            ++Y Q HP
Sbjct: 292 KDVYKQFHP 300


>gi|78187478|ref|YP_375521.1| phage/XerD family site-specific recombinase [Chlorobium luteolum
           DSM 273]
 gi|78167380|gb|ABB24478.1| site-specific recombinase, phage/XerD family [Chlorobium luteolum
           DSM 273]
          Length = 341

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 108/335 (32%), Positives = 174/335 (51%), Gaps = 37/335 (11%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT---EEKITIQTI 63
           P  +S  L++E   +L +   ++ LS  T+ +Y  D RQF  FLA ++   E  +++ T 
Sbjct: 20  PATLSERLIEE---FLLSGRGQKNLSGTTIVAYRTDLRQFFGFLARHSGSGEFDLSLVTP 76

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
                + +R F+     + +  RS+ R L+ +KSF ++L + +  TES +  +   + S 
Sbjct: 77  -----SLVRMFMGDLLRRGLQQRSIARKLASLKSFFRFLHESRHLTESALSAVSMPRYSR 131

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDAR----------NSAILYLLYGCGLRISEA 173
            +P  L E +A  L ++V+    H   +   R          ++AIL +LYGCGLRISE 
Sbjct: 132 PIPSFLTEPEASMLFEDVVPMAPHREGFAHGRELQRNFTLLRDAAILEMLYGCGLRISEL 191

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD--LCPFDLNLNIQLP--- 228
             L   ++      +++ GKG K RIVPL      A+ +Y++  L  F ++++  L    
Sbjct: 192 TGLRQSDLEMVGGFVKLTGKGRKQRIVPLGAPAVSALKKYFEVRLNFFRISVDGALGESD 251

Query: 229 -LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS---TTAHTLRHSFATHLLSNGGDLRSIQ 284
            +F   +GK + P + QR  R   RYL           HTLRH+FATHLL+ G DL+S+ 
Sbjct: 252 FVFLTNKGKQIYPMLVQRMTR---RYLAAVTEQKKKNPHTLRHTFATHLLNGGADLQSVS 308

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            +LGH  LSTT+IYT+V      + + E+Y + HP
Sbjct: 309 EMLGHSNLSTTEIYTHVTF----ERLREVYRKAHP 339


>gi|257063600|ref|YP_003143272.1| tyrosine recombinase XerD [Slackia heliotrinireducens DSM 20476]
 gi|256791253|gb|ACV21923.1| tyrosine recombinase XerD [Slackia heliotrinireducens DSM 20476]
          Length = 309

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 102/313 (32%), Positives = 157/313 (50%), Gaps = 27/313 (8%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
            L +R ++L  L +ERG S LT+ SY  D   ++ FL      +  +     ++  ++ A
Sbjct: 11  FLPDRNDYLAYLSVERGSSSLTVGSYATDLNDYISFLG-----ERGVPDSAAITRDDVVA 65

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK-SNSLPRALNEK 132
           +    R +   D S++R LS +K F ++L    +T + N  ++ +L K  + LP  L+  
Sbjct: 66  YEYDLRRRGYADSSIERHLSALKGFHRFLVGEGVT-KGNPADLVSLPKVPDRLPDVLSVS 124

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +      N LL    +   +  R+ A L LLYGCGLR SE +SL   ++   +  LR+ G
Sbjct: 125 EV-----NELLDQPFKDGPLGLRDQAALELLYGCGLRASELISLDLGDVFFAEGILRVMG 179

Query: 193 KGDKIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           KG + RIVP+  S ++ +L+Y +        P   +  + L      RG  L+       
Sbjct: 180 KGSRERIVPIGGSAQRVLLDYLENGRPKLAKPSKTDGAVIL----NARGGRLSRQALHTI 235

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +R     +G P     HTLRHSFATH+L  G DLR+IQ ILGH  +STTQIY +V+  + 
Sbjct: 236 VRTAGATIGRP-DLHPHTLRHSFATHMLEGGADLRTIQEILGHSDISTTQIYVHVDRSH- 293

Query: 307 GDWMMEIYDQTHP 319
              + E Y   HP
Sbjct: 294 ---IREEYLAAHP 303


>gi|311739368|ref|ZP_07713203.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311305184|gb|EFQ81252.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 296

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/301 (31%), Positives = 152/301 (50%), Gaps = 15/301 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q WL +L +ERG+S  TL +Y  D R++L +L         ++ +R ++   + A++   
Sbjct: 9   QTWLNHLAVERGVSANTLSNYRRDVRRYLSWLG-----DNGVEDLRSVTRPMVEAYLKDL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R+  +   S  R+L   +   K+     +      + +        LP  L+  +   L+
Sbjct: 64  RSH-MAVSSANRALIVARGLHKFAVSEGVVDVDVAVEVTPPSTGQQLPETLSVDEVTALI 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +     T  ET  +D R+ A+L +LYG G RISE +SL   ++   Q  +R++GKGDK R
Sbjct: 123 EA----TPTETP-VDVRDRALLEMLYGTGARISEIVSLNVDDVSSAQEVIRLRGKGDKER 177

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVP+    R+A+  Y       L+      LF   RG  L+       ++   +   L  
Sbjct: 178 IVPVGSHARQALDAYLVRARPALSKGKTPALFLNTRGGALSRQSAWTVLKTAAQRAQLGK 237

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           S + HTLRHSFATHLL  G D+R++Q +LGH  ++TTQIYT+V +    D + E++   H
Sbjct: 238 SISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTA----DSLREVWRTAH 293

Query: 319 P 319
           P
Sbjct: 294 P 294


>gi|229545742|ref|ZP_04434467.1| site-specific recombinase XerD [Enterococcus faecalis TX1322]
 gi|229309192|gb|EEN75179.1| site-specific recombinase XerD [Enterococcus faecalis TX1322]
          Length = 299

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 162/322 (50%), Gaps = 28/322 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ME  N PE+ +  L+           +ERG S+ T ++Y+ D + F +FL   T      
Sbjct: 1   MEEKNWPELFARYLI-----------VERGYSEKTKKAYQEDIQHFFLFLK--TSGNDNY 47

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            T+  L   ++RA++S+   Q+    S+ R ++ ++SF ++L K +   E+    +   K
Sbjct: 48  LTVEHL---DVRAYLSELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKK 104

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K   LPR   EK+      + L  ++   + +D RN A+L +LYG G+R+SE  +LT   
Sbjct: 105 KQLRLPRFFYEKEM-----DALFESAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDA 159

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKP 237
           +    S L + GKG+K R VP     + A+ +Y +     L    Q     +F    G+ 
Sbjct: 160 VDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQ 219

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           + P   +  + QL +   L      H LRH+FATHLL+NG D+R++Q +LGH  LSTTQI
Sbjct: 220 ITPTGIEYVLNQLIKKSSLNAEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQI 279

Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319
           Y +V  ++    + + Y   HP
Sbjct: 280 YAHVTKES----LQKNYRTFHP 297


>gi|148266023|ref|YP_001232729.1| tyrosine recombinase XerC [Geobacter uraniireducens Rf4]
 gi|146399523|gb|ABQ28156.1| tyrosine recombinase XerD subunit [Geobacter uraniireducens Rf4]
          Length = 294

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/303 (33%), Positives = 153/303 (50%), Gaps = 20/303 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK- 77
           + + + L  ER +S  TL +Y  D  QFL   AF   E+     +  +++  IR ++++ 
Sbjct: 6   EQFCRYLSTERNVSPHTLGAYRSDLEQFL---AFIDREQRPGADVNSVTHLLIRRYMAQL 62

Query: 78  -RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            +  QK    S+ R L+ I++F +YL +  +  ++    +   K    +P  LN  +   
Sbjct: 63  HKDHQK---SSIGRKLAAIRAFFRYLLREGLAAKNPAELVSTPKMEKKVPFHLNIDEVTA 119

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           LV+            +  RN AIL  LY CG+R+SE   L   ++  D+   R+ GKG+K
Sbjct: 120 LVE-----APQSADSLSLRNRAILETLYSCGIRVSELTGLNVGDVDMDERLARVLGKGNK 174

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            RIVP+    R A+  Y  L   + N ++  PL    RG  L      R I +    +  
Sbjct: 175 ERIVPVGTYARNALAAY--LASRN-NPSMDAPLILNARGGRLTSRSVARIIDKYIIKIAA 231

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATH+L  G DLR+IQ +LGH  LSTTQ YT+V+     D +ME+YD+
Sbjct: 232 MKKVSPHTLRHTFATHMLEGGADLRAIQELLGHSSLSTTQKYTHVSI----DRLMEVYDK 287

Query: 317 THP 319
            HP
Sbjct: 288 AHP 290


>gi|167041136|gb|ABZ05896.1| putative Phage integrase family protein [uncultured marine
           microorganism HF4000_001A02]
          Length = 298

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 163/304 (53%), Gaps = 17/304 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q+++  L++ER L++ +L+SYE D +Q+  +L    + ++ ++TIR ++   IR+F+ K 
Sbjct: 6   QDYMTMLKVERNLARNSLESYERDLQQYHQYL----KTELKLKTIRNVTLGHIRSFVRKL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   S+KR++S I+++  +L       +    N   L  +  +PR L     +  +
Sbjct: 62  SNRGLAANSIKRAVSSIRTYHNFLSAEGHMKD----NPAQLLDTPKIPRKLPNVLTIQEI 117

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D +L     E   +  R+ AI  ++Y CGLR++E       +I+ D   +R+QGKG K R
Sbjct: 118 DKIL-GIIPENAPMAQRDLAIFEMMYSCGLRVTELCDFKTSDILWDSEMIRVQGKGSKQR 176

Query: 199 IVPLLPSVRKAILEYYDL---CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            VP+ P  R+ +  Y +       D N N+   +F    G+ L   +    +++      
Sbjct: 177 FVPIGPIARENLKNYLNHERNTLADKNPNVA-EVFLSRNGRKLTRMMIWVLLKKWTESAE 235

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + HTLRHSFATHLL  G DLRS+Q +LGH  ++TTQ+YT+++ ++    + E++ 
Sbjct: 236 VKKEVSPHTLRHSFATHLLEGGADLRSVQEMLGHTDITTTQVYTHLDKEH----LKEVHR 291

Query: 316 QTHP 319
             HP
Sbjct: 292 TYHP 295


>gi|260556505|ref|ZP_05828723.1| tyrosine recombinase XerC [Acinetobacter baumannii ATCC 19606]
 gi|260409764|gb|EEX03064.1| tyrosine recombinase XerC [Acinetobacter baumannii ATCC 19606]
          Length = 308

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 102/311 (32%), Positives = 173/311 (55%), Gaps = 26/311 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+  +I+   S+ T+ +YE D + FL F      +K+ +   R +  +++R ++++R  
Sbjct: 15  WLKERKIQNQ-SEHTITAYERDVKSFLEFCEL---KKVDL---RNVEASDLREYLAQRVE 67

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           Q ++   S++R L+ I+ F+K+ ++ K   E N  +   LK+    PR L     +  V+
Sbjct: 68  QDQLSSSSMQRHLTSIRQFMKWAEQGKYL-EINPTDDFKLKRQ---PRPLPGMIDIETVN 123

Query: 140 NVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            +L     E K ID     R+ A+L LLY  GLR++E   LT ++I  ++  +RI GKG+
Sbjct: 124 QILDQPMPE-KPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGN 182

Query: 196 KIRIVPLLPSVRKAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K RIVP     ++++L +   Y++     + N   P+F   RG  L P   ++ ++   +
Sbjct: 183 KTRIVPFGKKAKESLLNWLKIYNIWKGHFDQNA--PVFISQRGGALTPRQIEKRVKLQAQ 240

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+ +    H LRH FA+H+LS+ GDLRS+Q +LGH  LSTTQIYT+++     D + +
Sbjct: 241 RAGVNVDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHLAQ 296

Query: 313 IYDQTHPSITQ 323
           +YDQ HP  T+
Sbjct: 297 VYDQAHPRATK 307


>gi|227489005|ref|ZP_03919321.1| site-specific tyrosine recombinase XerD [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091081|gb|EEI26393.1| site-specific tyrosine recombinase XerD [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 360

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 155/308 (50%), Gaps = 21/308 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  + W+  L +ERG ++ T+ SY  D   +L F+          +++  ++ T+I AF+
Sbjct: 68  KVARQWITYLTVERGKARNTIASYRRDLASYLDFVGE--------RSLDSIAATDIEAFL 119

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                  +   S++R LS I+ F  + +   I  +    ++        LP  L+  +  
Sbjct: 120 QSLGRHGLAVTSVRRMLSTIRGFHAFARDEGIVADDVAHDITPPAMPQHLPDTLSVDEIN 179

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQG 192
           TL+++    ++     +  RN A+L LLYG G RISE LSL   +I   + T   L + G
Sbjct: 180 TLIESQAGDSA-----VALRNKALLELLYGTGARISEVLSLAVDDITALEETDGILVLTG 234

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLR 251
           KGDK RIVP+    R+A+  Y       LN      LF  +RG K ++     + ++Q  
Sbjct: 235 KGDKQRIVPVGSHARQAVDAYLVRGRPQLNKGKSAALFLNVRGGKAMSRQSAWQVVKQAA 294

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+    + HTLRHSFATHLL  G D+RS+Q +LGH  ++TTQIYT++ +    D + 
Sbjct: 295 TEAGITKDISPHTLRHSFATHLLEGGADVRSVQELLGHASVTTTQIYTHITA----DSLR 350

Query: 312 EIYDQTHP 319
            ++   HP
Sbjct: 351 AMWRTAHP 358


>gi|152976499|ref|YP_001376016.1| site-specific tyrosine recombinase XerD [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025251|gb|ABS23021.1| tyrosine recombinase XerD [Bacillus cytotoxicus NVH 391-98]
          Length = 296

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 162/303 (53%), Gaps = 16/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISK 77
           ++++  + +E+GL+K T+ SYE D + ++ +L     +K+  ++T  +++  +I  F+  
Sbjct: 6   KDFIHYMVVEKGLAKNTVVSYERDLKSYVKYL-----QKVEQMKTFHEVTRMQIVNFLQH 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R      ++L R ++ I+SF ++L + +       +++   +    LP+ L+  +    
Sbjct: 61  LRENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVSEV--- 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               LL T   T     R+ A+L LLY  GLR+SE ++L  +++      +R  GKG+K 
Sbjct: 118 --EALLQTPKTTSAYGIRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCVGKGNKE 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RI+PL     +AI  Y +    +L     +  LF    G  L+   F + +++L +   +
Sbjct: 176 RIIPLGSLATEAIQRYIEKGRKELMGKKAVDALFLNHHGNRLSRQGFWKILKRLAKEANI 235

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + ++Y Q
Sbjct: 236 EKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKDVYKQ 291

Query: 317 THP 319
            HP
Sbjct: 292 FHP 294


>gi|218778680|ref|YP_002429998.1| tyrosine recombinase XerD [Desulfatibacillum alkenivorans AK-01]
 gi|218760064|gb|ACL02530.1| tyrosine recombinase XerD [Desulfatibacillum alkenivorans AK-01]
          Length = 298

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/303 (33%), Positives = 157/303 (51%), Gaps = 19/303 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            ++  L +E+GLS+ TL++Y  D   F  FL     +K  I  + +    +I   +   R
Sbjct: 10  QYMNYLLVEKGLSQNTLEAYGKDLGVFTDFL-----QKRKIDDLTKADTPDIVQHLIDLR 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLV 138
            Q +G R+  R L  I+    +L++ KI          N  K   LP+  L+    +++V
Sbjct: 65  AQGLGARTRARHLVAIRGLFSFLEQEKIIKH-------NPAKLVDLPKTGLHLPDVISVV 117

Query: 139 D-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +   LL   +E   + AR+ A++ L Y  GLR+SE +++  Q+I  D   +R+ GKG K 
Sbjct: 118 EIEQLLEAPNEMDILGARDRAMMELAYASGLRVSELINVRVQDIHLDAGFVRVMGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVP+    R+ I  Y D   P  L       LF    G+P+    F + +++     G+
Sbjct: 178 RIVPMGRQAREKIKTYMDHDRPILLKGKPGEYLFVVRGGRPMTRQAFWKLLKKYALKAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + T HTLRHSFA+HLL  G DLR +Q +LGH  +STTQIYT+V  +     ++EI+++
Sbjct: 238 AKNITPHTLRHSFASHLLEGGADLRVVQEMLGHVDISTTQIYTHVARER----LIEIHER 293

Query: 317 THP 319
            HP
Sbjct: 294 YHP 296


>gi|89091996|ref|ZP_01164951.1| tyrosine recombinase XerD [Oceanospirillum sp. MED92]
 gi|89083731|gb|EAR62948.1| tyrosine recombinase XerD [Oceanospirillum sp. MED92]
          Length = 306

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/300 (31%), Positives = 161/300 (53%), Gaps = 16/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  + +E+GLS  TL SY  D  QF ++L   T++ + +   ++    +I+ +++ R  
Sbjct: 20  YLDAIWMEKGLSDNTLSSYRRDLVQFSVWL---TDQGVIM---KRCCRVDIQKYLAWRVK 73

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           ++    S  R LS ++ F +YL + ++ +E  +L + + KK   LP+ L E +   L+D 
Sbjct: 74  ERRKASSTSRMLSCLRGFYRYLLREEMISEDPLLLIDSPKKGRPLPKTLTESEVELLLDA 133

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L        +  R+ A+L +LY  GLR+SE ++L    I  +Q  LR+ GKG K R+V
Sbjct: 134 PDLSDP-----VQYRDRAMLEVLYATGLRVSELVALRLHEINLNQGVLRVMGKGGKERLV 188

Query: 201 PLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           PL       ++ Y  ++ P     ++   LF   RG+ +    F   I++     G+  +
Sbjct: 189 PLGEEAIHWVMRYMGEVRPALFTHDVSDVLFPSRRGQQMTRQTFWHRIKRHALTAGIDKT 248

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++ + HP
Sbjct: 249 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQQR----LQSLHQEHHP 304


>gi|332521441|ref|ZP_08397895.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
 gi|332042840|gb|EGI79039.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
          Length = 298

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/292 (33%), Positives = 153/292 (52%), Gaps = 20/292 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L+IERGLS  ++ +Y  D ++ +  L    EE   + +   +    I+ FI    ++ I 
Sbjct: 14  LKIERGLSNNSIDNYSFDVKKLIKHL----EENNIVSSPVNIQKQTIQEFIYAI-SKTIN 68

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            RS  R +SG+K F  YL       ++ +  +   K    LP  L+E++   L+  V L 
Sbjct: 69  SRSQSRLISGLKGFFNYLVFEDYRFDNPLDTIDAPKIGRKLPDTLSEQEINNLISAVDLS 128

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           T         RN  IL LLYGCGLR+SE   L   ++  D+  +++ GKGDK R VP++P
Sbjct: 129 TPQ-----GERNRCILELLYGCGLRVSELTHLKISDLFFDEGYIKVTGKGDKQRFVPIVP 183

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           + +K I  Y +    ++  ++ +P      LF   RGK L   +    ++ L   + L  
Sbjct: 184 ATQKFINIYRN----EVRNHMVIPSEYKDTLFLNRRGKQLTRAMIFTIVKSLAIKINLGK 239

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           + + HT RHSFATHLL NG DLR+IQ +LGH  ++TT+IY +V+  +  D M
Sbjct: 240 TISPHTFRHSFATHLLENGADLRAIQLMLGHESITTTEIYMHVDKSHLKDVM 291


>gi|196034794|ref|ZP_03102201.1| integrase/recombinase XerD [Bacillus cereus W]
 gi|195992333|gb|EDX56294.1| integrase/recombinase XerD [Bacillus cereus W]
          Length = 296

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 161/304 (52%), Gaps = 18/304 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  + +E+GL+K T+ SYE D + ++ +L    + K    +  +++   I  F+   
Sbjct: 6   KDFIHYMVVEKGLAKNTVVSYERDLKSYVKYLQKVEQAK----SFHEVTRLHIVNFLQHL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +      ++L R ++ I+SF ++L + +       +++   +    LP+ L+       V
Sbjct: 62  KENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLS-------V 114

Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           D V  LL T   T     R+ A+L LLY  GLR+SE ++L  +++      +R  GKG+K
Sbjct: 115 DEVEALLQTPKMTSVFGVRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCVGKGNK 174

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            RI+PL     +AI +Y +    +L    +   LF    G  L+   F + +++L +   
Sbjct: 175 ERIIPLGSLATEAIQKYIEKGRRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEAN 234

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + ++Y 
Sbjct: 235 IEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKDVYK 290

Query: 316 QTHP 319
           Q HP
Sbjct: 291 QFHP 294


>gi|23099302|ref|NP_692768.1| integrase:recombinase [Oceanobacillus iheyensis HTE831]
 gi|34222800|sp|Q7ZAM3|XERD_OCEIH RecName: Full=Tyrosine recombinase xerD
 gi|22777531|dbj|BAC13803.1| integrase : recombinase [Oceanobacillus iheyensis HTE831]
          Length = 297

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/303 (33%), Positives = 157/303 (51%), Gaps = 16/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++   L IERGLS  TL SY+ D   +L     Y ++     T  ++S T+I  F+   
Sbjct: 7   EDFFHFLRIERGLSDNTLSSYKRDLTNYLQ----YMKDHDKTATWDKISRTDIMGFLYML 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + Q     ++ R +S I+SF ++L + +IT+    L++   KK   LP  L++ +     
Sbjct: 63  KDQGKSTATISRHISSIRSFHQFLIREQITSNDPSLHIETPKKDRKLPDILSQDEV---- 118

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            + LL     TK +  RN A+L LLY  GLR+SE +SL   ++      ++  GKG K R
Sbjct: 119 -DRLLEIKMNTK-LSVRNKAMLELLYATGLRVSELISLNVSDLHLMMGFVQCFGKGSKER 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           IVPL  + +  + +Y       L    N +  LF    G+ L    F + ++ L    G+
Sbjct: 177 IVPLGDTAKHYLEKYISEARDSLIKKNNREDALFVNQHGRRLTRQGFWKILKGLTLEAGI 236

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + T HTLRHSFATHLL NG DLR +Q +LGH  +STTQ+YT+V        + ++Y  
Sbjct: 237 LKTITPHTLRHSFATHLLENGADLRLVQEMLGHADISTTQVYTHVTKAR----LKDMYQS 292

Query: 317 THP 319
            HP
Sbjct: 293 YHP 295


>gi|57234018|ref|YP_181928.1| tyrosine recombinase XerD [Dehalococcoides ethenogenes 195]
 gi|57224466|gb|AAW39523.1| tyrosine recombinase XerD [Dehalococcoides ethenogenes 195]
          Length = 302

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 155/302 (51%), Gaps = 9/302 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q++L  L +E+G S+ T ++YE D RQ + F      +   I      +   + A++   
Sbjct: 6   QSFLNYLMVEKGFSENTTEAYENDLRQMMTFADKEAAKSGKIPGWENFTRQTMLAYMLDL 65

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + +     ++ R ++  KSF  ++       E+   N+   K    LP A++  Q   L+
Sbjct: 66  KERNYAITTVVRKMAAAKSFFNFMVAEGKLKENPTENISTPKVGKPLPDAISISQVRALL 125

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +  +   S E K    R+ A+L LLY  G+R++E ++L   ++   +  +R  GKG K R
Sbjct: 126 NQPVKSGSSEAK----RDKAMLELLYASGMRVTELVNLNVLDVDLKEGFVRCFGKGRKER 181

Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           ++P+ P   ++I EY  ++ P  +    +  LF   RG  L      + ++   R  GL 
Sbjct: 182 MIPIYPQAAQSIQEYLTEIRPNLVRAETEKALFLNRRGDRLTRQGLWQILKGYAREAGLD 241

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T HTLRHSFATH+LS G DLRS+Q +LGH  +STTQIYT++ S++    +   Y++ 
Sbjct: 242 DVVTPHTLRHSFATHMLSGGADLRSVQELLGHANISTTQIYTHLTSEH----IKRSYEKA 297

Query: 318 HP 319
           HP
Sbjct: 298 HP 299


>gi|217963893|ref|YP_002349571.1| tyrosine recombinase XerD [Listeria monocytogenes HCC23]
 gi|290892115|ref|ZP_06555111.1| integrase/recombinase XerD [Listeria monocytogenes FSL J2-071]
 gi|217333163|gb|ACK38957.1| tyrosine recombinase XerD [Listeria monocytogenes HCC23]
 gi|290558238|gb|EFD91756.1| integrase/recombinase XerD [Listeria monocytogenes FSL J2-071]
 gi|307571537|emb|CAR84716.1| integrase/recombinase [Listeria monocytogenes L99]
          Length = 297

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 162/309 (52%), Gaps = 27/309 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  L +ERGLS  T+++YE D R F+     Y +    +     L  ++I  F++  
Sbjct: 6   EDFLHFLIVERGLSANTIKAYERDLRYFVS----YMDVAKGLTDPNTLERSDIVGFMAFA 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R +    RS+ R ++ ++SF  YL      +   ++ +   K++  LP+ LN       +
Sbjct: 62  RQEGKSPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLN-------L 114

Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           D+V  LL +S  +  +  R+ A++ +LY  GLR++E +SL   ++      ++  GKGDK
Sbjct: 115 DDVEKLLSSSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDK 174

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI------RGKPLNPGVFQRYIRQL 250
            RI+PL  +    + +Y +    +    ++ P +R         G+ L    F + ++ +
Sbjct: 175 ERIIPLGKTATTVLEKYLE----EARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGI 230

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  G+    T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT+V        +
Sbjct: 231 AKESGIEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLR----L 286

Query: 311 MEIYDQTHP 319
            ++Y Q HP
Sbjct: 287 KDVYKQFHP 295


>gi|30264167|ref|NP_846544.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           Ames]
 gi|47778274|ref|YP_020956.2| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49186997|ref|YP_030249.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           Sterne]
 gi|49480325|ref|YP_038149.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|65321483|ref|ZP_00394442.1| COG4974: Site-specific recombinase XerD [Bacillus anthracis str.
           A2012]
 gi|118479292|ref|YP_896443.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           str. Al Hakam]
 gi|165871247|ref|ZP_02215897.1| integrase/recombinase XerD [Bacillus anthracis str. A0488]
 gi|167633747|ref|ZP_02392071.1| integrase/recombinase XerD [Bacillus anthracis str. A0442]
 gi|167639424|ref|ZP_02397695.1| integrase/recombinase XerD [Bacillus anthracis str. A0193]
 gi|170687265|ref|ZP_02878483.1| integrase/recombinase XerD [Bacillus anthracis str. A0465]
 gi|170705812|ref|ZP_02896275.1| integrase/recombinase XerD [Bacillus anthracis str. A0389]
 gi|177652642|ref|ZP_02935058.1| integrase/recombinase XerD [Bacillus anthracis str. A0174]
 gi|190565945|ref|ZP_03018864.1| integrase/recombinase XerD [Bacillus anthracis Tsiankovskii-I]
 gi|196038584|ref|ZP_03105892.1| integrase/recombinase XerD [Bacillus cereus NVH0597-99]
 gi|196047216|ref|ZP_03114432.1| integrase/recombinase XerD [Bacillus cereus 03BB108]
 gi|218905229|ref|YP_002453063.1| integrase/recombinase XerD [Bacillus cereus AH820]
 gi|225866075|ref|YP_002751453.1| integrase/recombinase XerD [Bacillus cereus 03BB102]
 gi|227816868|ref|YP_002816877.1| integrase/recombinase XerD [Bacillus anthracis str. CDC 684]
 gi|228929139|ref|ZP_04092166.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228947809|ref|ZP_04110096.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229093151|ref|ZP_04224269.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-42]
 gi|229123612|ref|ZP_04252807.1| Tyrosine recombinase xerD [Bacillus cereus 95/8201]
 gi|229186335|ref|ZP_04313500.1| Tyrosine recombinase xerD [Bacillus cereus BGSC 6E1]
 gi|229604915|ref|YP_002868390.1| integrase/recombinase XerD [Bacillus anthracis str. A0248]
 gi|254683858|ref|ZP_05147718.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721693|ref|ZP_05183482.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           A1055]
 gi|254736205|ref|ZP_05193911.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           Western North America USA6153]
 gi|254744094|ref|ZP_05201777.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           Kruger B]
 gi|254754126|ref|ZP_05206161.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           Vollum]
 gi|254758184|ref|ZP_05210211.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           Australia 94]
 gi|301055587|ref|YP_003793798.1| tyrosine recombinase [Bacillus anthracis CI]
 gi|30258812|gb|AAP28030.1| integrase/recombinase XerD [Bacillus anthracis str. Ames]
 gi|47551979|gb|AAT33431.2| integrase/recombinase XerD [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49180924|gb|AAT56300.1| integrase/recombinase XerD [Bacillus anthracis str. Sterne]
 gi|49331881|gb|AAT62527.1| integrase/recombinase (tyrosine recombinase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|118418517|gb|ABK86936.1| tyrosine recombinase XerD subunit [Bacillus thuringiensis str. Al
           Hakam]
 gi|164713166|gb|EDR18693.1| integrase/recombinase XerD [Bacillus anthracis str. A0488]
 gi|167512483|gb|EDR87858.1| integrase/recombinase XerD [Bacillus anthracis str. A0193]
 gi|167531153|gb|EDR93840.1| integrase/recombinase XerD [Bacillus anthracis str. A0442]
 gi|170129352|gb|EDS98216.1| integrase/recombinase XerD [Bacillus anthracis str. A0389]
 gi|170668882|gb|EDT19627.1| integrase/recombinase XerD [Bacillus anthracis str. A0465]
 gi|172081977|gb|EDT67045.1| integrase/recombinase XerD [Bacillus anthracis str. A0174]
 gi|190562864|gb|EDV16830.1| integrase/recombinase XerD [Bacillus anthracis Tsiankovskii-I]
 gi|196021965|gb|EDX60656.1| integrase/recombinase XerD [Bacillus cereus 03BB108]
 gi|196030307|gb|EDX68906.1| integrase/recombinase XerD [Bacillus cereus NVH0597-99]
 gi|218535959|gb|ACK88357.1| integrase/recombinase XerD [Bacillus cereus AH820]
 gi|225786005|gb|ACO26222.1| integrase/recombinase XerD [Bacillus cereus 03BB102]
 gi|227002405|gb|ACP12148.1| integrase/recombinase XerD [Bacillus anthracis str. CDC 684]
 gi|228597129|gb|EEK54784.1| Tyrosine recombinase xerD [Bacillus cereus BGSC 6E1]
 gi|228659747|gb|EEL15392.1| Tyrosine recombinase xerD [Bacillus cereus 95/8201]
 gi|228690125|gb|EEL43919.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-42]
 gi|228811796|gb|EEM58130.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228830429|gb|EEM76039.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229269323|gb|ACQ50960.1| integrase/recombinase XerD [Bacillus anthracis str. A0248]
 gi|300377756|gb|ADK06660.1| tyrosine recombinase [Bacillus cereus biovar anthracis str. CI]
          Length = 296

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 161/304 (52%), Gaps = 18/304 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  + +E+GL+K T+ SYE D + ++ +L    + K    +  +++   I  F+   
Sbjct: 6   KDFIHYMVVEKGLAKNTVVSYERDLKSYVKYLQKVEQAK----SFHEVTRLHIVNFLQHL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +      ++L R ++ I+SF ++L + +       +++   +    LP+ L+       V
Sbjct: 62  KENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLS-------V 114

Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           D V  LL T   T     R+ A+L LLY  GLR+SE ++L  +++      +R  GKG+K
Sbjct: 115 DEVEALLQTPKMTSAFGVRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCVGKGNK 174

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            RI+PL     +AI +Y +    +L    +   LF    G  L+   F + +++L +   
Sbjct: 175 ERIIPLGSLATEAIQKYIEKGRRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEAN 234

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + ++Y 
Sbjct: 235 IEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKDVYK 290

Query: 316 QTHP 319
           Q HP
Sbjct: 291 QFHP 294


>gi|332534749|ref|ZP_08410577.1| site-specific recombinase XerD [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332035836|gb|EGI72320.1| site-specific recombinase XerD [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 308

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/301 (30%), Positives = 161/301 (53%), Gaps = 17/301 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L +L +E+G+S+ TL +Y  D  +F +FL    E  +T+  +      +I ++++ R
Sbjct: 23  ETFLDSLYLEQGVSENTLSAYRSDLDKFCLFLK--GENLMTVTGL------DIESYLAHR 74

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +  RS  RS+S +K F +Y  + KI ++S +LN+   K   SLP+ L+E +     
Sbjct: 75  VDLGLKPRSTARSISALKRFYQYFVREKIISDSPMLNIAQPKAGQSLPKTLSEAEV---- 130

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL+  +  + +  R+ A+L LLY  GLR+SE + L  + I   Q+ + ++GKG+K R
Sbjct: 131 -EALLNAPNTEEAMGLRDKAMLELLYATGLRVSELVGLRMEQINLRQAVVFVKGKGNKER 189

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VPL       + ++       +  +    +F   RG  +    F   I+       +  
Sbjct: 190 LVPLGEEAMYWLEQFLKGGRAQMIKHATDFVFPSKRGVGMTRQTFWHRIKHYAILASVES 249

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HT+RH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  ++ + H
Sbjct: 250 PLSPHTMRHAFATHLLNHGADLRVVQMMLGHSDLSTTQIYTHVANER----LKSVHAEHH 305

Query: 319 P 319
           P
Sbjct: 306 P 306


>gi|58337257|ref|YP_193842.1| integrase-recombinase [Lactobacillus acidophilus NCFM]
 gi|227903842|ref|ZP_04021647.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796]
 gi|58254574|gb|AAV42811.1| integrase-recombinase [Lactobacillus acidophilus NCFM]
 gi|227868729|gb|EEJ76150.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796]
          Length = 301

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/305 (32%), Positives = 168/305 (55%), Gaps = 18/305 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L+  +IERGLS  T+ +Y  D  ++L F+    +E +T         T++ AF++++ 
Sbjct: 12  DYLRYSQIERGLSVNTINAYRQDLEEYLTFVK---KENMTSWPTEA---TDVDAFLARQH 65

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  S+ R +S ++ F ++L ++ I   + +L +   KK + LP AL + + + L+D
Sbjct: 66  DLNKATSSISRLISSLRKFYQWLARQNIQKLNPMLEIDLPKKEHKLPIALTQDEVVNLLD 125

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                  +  + +  R+ AIL  LY  G+R+SE ++L  Q++ +D   +R+ GKG K R+
Sbjct: 126 Q-----PNTKQKLGLRDKAILETLYATGMRVSELINLKLQDLHEDLGLVRVLGKGAKERL 180

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNI---QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +P+       + +Y       L LN+      +F   RGK L      + I++  +  G+
Sbjct: 181 IPISSVALDWLKKYEKQVRDPLILNVGKDDEHIFLNNRGKQLTRQAIWQMIKKYCQLAGI 240

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               T HTLRH+FATHLL NG DLR +Q ILGH  +STTQIYTN++ K+    ++++Y +
Sbjct: 241 AKDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKH----ILQVYQK 296

Query: 317 THPSI 321
           THP +
Sbjct: 297 THPRL 301


>gi|46908189|ref|YP_014578.1| integrase/recombinase XerD [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47093384|ref|ZP_00231151.1| integrase/recombinase XerD [Listeria monocytogenes str. 4b H7858]
 gi|226224560|ref|YP_002758667.1| integrase/recombinase [Listeria monocytogenes Clip81459]
 gi|254825549|ref|ZP_05230550.1| integrase/recombinase XerD [Listeria monocytogenes FSL J1-194]
 gi|254852857|ref|ZP_05242205.1| integrase/recombinase XerD [Listeria monocytogenes FSL R2-503]
 gi|254931873|ref|ZP_05265232.1| integrase/recombinase XerD [Listeria monocytogenes HPB2262]
 gi|254992940|ref|ZP_05275130.1| integrase/recombinase [Listeria monocytogenes FSL J2-064]
 gi|255520096|ref|ZP_05387333.1| integrase/recombinase [Listeria monocytogenes FSL J1-175]
 gi|300763733|ref|ZP_07073730.1| tyrosine recombinase XerD [Listeria monocytogenes FSL N1-017]
 gi|71153414|sp|Q71Y59|XERD_LISMF RecName: Full=Tyrosine recombinase xerD
 gi|46881459|gb|AAT04755.1| integrase/recombinase XerD [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47018255|gb|EAL09021.1| integrase/recombinase XerD [Listeria monocytogenes str. 4b H7858]
 gi|225877022|emb|CAS05731.1| Putative integrase/recombinase [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
 gi|258606190|gb|EEW18798.1| integrase/recombinase XerD [Listeria monocytogenes FSL R2-503]
 gi|293583424|gb|EFF95456.1| integrase/recombinase XerD [Listeria monocytogenes HPB2262]
 gi|293594790|gb|EFG02551.1| integrase/recombinase XerD [Listeria monocytogenes FSL J1-194]
 gi|300515469|gb|EFK42519.1| tyrosine recombinase XerD [Listeria monocytogenes FSL N1-017]
 gi|328466303|gb|EGF37460.1| tyrosine recombinase xerD [Listeria monocytogenes 1816]
 gi|328472797|gb|EGF43646.1| tyrosine recombinase xerD [Listeria monocytogenes 220]
          Length = 297

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 162/309 (52%), Gaps = 27/309 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  L +ERGLS  T+++YE D R F+     Y +    +     L  ++I  F++  
Sbjct: 6   EDFLHFLIVERGLSANTIKAYERDLRYFVS----YMDVAKGLTDPNTLERSDIVGFMAFA 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R +    RS+ R ++ ++SF  YL      +   ++ +   K++  LP+ LN       +
Sbjct: 62  RQEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLN-------L 114

Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           D+V  LL +S  +  +  R+ A++ +LY  GLR++E +SL   ++      ++  GKGDK
Sbjct: 115 DDVEKLLSSSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDK 174

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI------RGKPLNPGVFQRYIRQL 250
            RI+PL  +    + +Y +    +    ++ P +R         G+ L    F + ++ +
Sbjct: 175 ERIIPLGKTATTVLEKYLE----EARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGI 230

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  G+    T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT+V        +
Sbjct: 231 AKESGIEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLR----L 286

Query: 311 MEIYDQTHP 319
            ++Y Q HP
Sbjct: 287 KDVYKQFHP 295


>gi|167585124|ref|ZP_02377512.1| site-specific tyrosine recombinase XerC [Burkholderia ubonensis Bu]
          Length = 306

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 164/318 (51%), Gaps = 33/318 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L NL+  R LS  TL++Y  +  +     A         + +  LS  ++R  +++   
Sbjct: 9   YLSNLKHVRQLSDHTLRAYTHELGELKKLAAG--------RPLEALSAVDMRGAVARAHA 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS+   LS  ++F ++L +R     + +  +R  K++ +LP+AL+   A  L+D 
Sbjct: 61  AGLSARSISHRLSAWRAFYRWLAQRIEMPANPVAAVRAPKRAKTLPKALSVDDATALMDA 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTLR 189
            L  T+        R+ AIL LLY  GLR++E + L  +    D           ++ + 
Sbjct: 121 PLPGTTEGL-----RDHAILELLYSSGLRLAELIGLDVRYAQADGYRSAGWLDLAEAEVT 175

Query: 190 IQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           ++GKG+K R VP+    RKAI  L  +     +   +   PLF  +RG  ++PGV +  +
Sbjct: 176 VRGKGNKERKVPV---GRKAIDALNAWLAVRGEFVKHDPHPLFLSVRGNRMSPGVVRERV 232

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++     G+P     H LRHSFATH+L + GDLR++Q +LGH  ++ TQ+YT+++ ++  
Sbjct: 233 KRAALAAGIPAHVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYTSLDFQH-- 290

Query: 308 DWMMEIYDQTHPSITQKD 325
             + +IYD  HP   ++D
Sbjct: 291 --LAKIYDSAHPRAKKRD 306


>gi|329943079|ref|ZP_08291853.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila
           psittaci Cal10]
 gi|313848235|emb|CBY17236.1| putative site-specific recombinase [Chlamydophila psittaci RD1]
 gi|328814626|gb|EGF84616.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila
           psittaci Cal10]
          Length = 299

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 105/303 (34%), Positives = 158/303 (52%), Gaps = 33/303 (10%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L ++RGLS  ++ +Y  D   FL   A        I +I ++S   +  F+ +   +K  
Sbjct: 18  LSVDRGLSCNSISAYIQDITLFLKINA--------ITSIAEISQDSVHLFVDQLHKRKEA 69

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           + +L R L  +K F ++LK+ K+     ++    + K   LP  L  K+  TL+   +  
Sbjct: 70  EATLARRLIALKVFFRFLKEAKLLEHPPLIEHPKIWKR--LPTVLTPKEVDTLL--AIPK 125

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            +  +  I  R++AIL+ LY  G+R+SE   L   ++ DD   LR+ GKG K R+VPL  
Sbjct: 126 KTTTSSMISTRDTAILHTLYSTGIRVSELCGLHIGDVSDD--FLRVTGKGSKTRLVPLGK 183

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLN-PGVFQR---YIRQLRRYLGL 256
              KAI  Y  LCPF  NL  + P    LF  IRG+ L    V++R   Y +Q+      
Sbjct: 184 LASKAIDAY--LCPFRENLQKKQPEEHHLFLSIRGRKLERSCVWKRIHYYAKQVTHKRVS 241

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           P     H+LRH+FATHLL N  DLR IQ +LGH R+++T++YT+V      D +ME +  
Sbjct: 242 P-----HSLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHV----AADTLMENFLS 292

Query: 317 THP 319
            HP
Sbjct: 293 YHP 295


>gi|154686593|ref|YP_001421754.1| site-specific tyrosine recombinase XerD [Bacillus amyloliquefaciens
           FZB42]
 gi|154352444|gb|ABS74523.1| XerD [Bacillus amyloliquefaciens FZB42]
          Length = 296

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 156/302 (51%), Gaps = 14/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  + +ERGLS+ T+ SYE D + + +FL     E + I +   ++   I  ++   
Sbjct: 6   KDFIHYVRVERGLSQNTMMSYERDLKSYSLFLT----ETLQITSWNDVTRLHIIQYLKHI 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +      ++  R L+ I+SF ++L + K   +   +++   K   +LP+ L   +   L+
Sbjct: 62  KDSGKSGKTSARHLASIRSFHQFLLREKAADKDPSVHIETQKTERTLPKVLALHEVERLL 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D   L +         R+ A+L LLY  G+R+SE + L   ++      +R  GKG K R
Sbjct: 122 DTPKLDSP-----FGLRDKAMLELLYATGIRVSEMIELKLSDVHLTMGFVRCFGKGRKER 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           IVP+  +   AI  Y +     L   N+   LF    G+ ++   F + ++++    G+ 
Sbjct: 177 IVPIGEAASHAIEAYIEKARGKLLKKNVTEALFLNHHGRQISRQGFWKNLKKIALEAGIK 236

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        + ++Y Q 
Sbjct: 237 KELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----LKDVYKQY 292

Query: 318 HP 319
           HP
Sbjct: 293 HP 294


>gi|311109403|ref|YP_003982256.1| tyrosine recombinase XerC [Achromobacter xylosoxidans A8]
 gi|310764092|gb|ADP19541.1| tyrosine recombinase XerC [Achromobacter xylosoxidans A8]
          Length = 331

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/319 (31%), Positives = 159/319 (49%), Gaps = 27/319 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL++LE  R  S  TL  Y  +   FL  LA +   K+ +  I       IR F+++   
Sbjct: 24  WLRHLETNRRYSPHTLDGYRREL-HFLRELADHA--KLPLDKI---GNGHIRQFVARLHA 77

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q  G RSL R+L+  + F ++         + +  +R  K    LP+AL+ +Q   L+D 
Sbjct: 78  QGRGPRSLARTLAAWRGFYQWWAPAIELAGNPVAGVRAPKAPRGLPKALSVEQTQALLDR 137

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL-----------TPQNIMDDQSTLR 189
                + E   +  R+ A+L LLY  GLR+SE + L           +   +  +++ + 
Sbjct: 138 APAQVATEPAAL--RDQAMLELLYSSGLRLSELVGLDLRYERSGNYESRGWLSLEEAEVI 195

Query: 190 IQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
           + GKG K R VP+    L ++RK I     L PF         LF G RG+ ++P V Q 
Sbjct: 196 VLGKGGKRRSVPVGQAALEALRKWIAVRPQLTPFTAQPEDAAALFLGARGRRISPRVVQL 255

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            + ++ +  G+P     H LRHSFA+H+L +  DLR++Q +LGH  +STTQIYT ++ ++
Sbjct: 256 QLARIAQQAGVPTHVHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQIYTRLDFQH 315

Query: 306 GGDWMMEIYDQTHPSITQK 324
               +   YDQ HP   +K
Sbjct: 316 ----LARAYDQAHPRAGRK 330


>gi|52141402|ref|YP_085426.1| site-specific tyrosine recombinase XerD [Bacillus cereus E33L]
 gi|228987282|ref|ZP_04147403.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229157674|ref|ZP_04285749.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 4342]
 gi|51974871|gb|AAU16421.1| integrase/recombinase (tyrosine recombinase) [Bacillus cereus E33L]
 gi|228625631|gb|EEK82383.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 4342]
 gi|228772511|gb|EEM20956.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 296

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 161/304 (52%), Gaps = 18/304 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  + +E+GL+K T+ SYE D + ++ +L    + K    +  +++   I  F+   
Sbjct: 6   KDFIHYMVVEKGLAKNTVVSYERDLKSYVKYLQKVEQAK----SFHEVTRLHIVNFLQHL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +      ++L R ++ I+SF ++L + +       +++   +    LP+ L+       V
Sbjct: 62  KENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLS-------V 114

Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           D V  LL T   T     R+ A+L LLY  GLR+SE ++L  +++      +R  GKG+K
Sbjct: 115 DEVEALLQTPKMTSAFGVRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNK 174

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            RI+PL     +AI +Y +    +L    +   LF    G  L+   F + +++L +   
Sbjct: 175 ERIIPLGSLATEAIQKYIEKGRRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEAN 234

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + ++Y 
Sbjct: 235 IEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKDVYK 290

Query: 316 QTHP 319
           Q HP
Sbjct: 291 QFHP 294


>gi|315152400|gb|EFT96416.1| tyrosine recombinase XerC [Enterococcus faecalis TX0031]
          Length = 299

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 162/322 (50%), Gaps = 28/322 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ME  N PE+ +  L+           +ERG S+ T ++Y+ D + F  FL   T      
Sbjct: 1   MEEKNWPELFARYLI-----------VERGYSEKTKKAYQEDIQHFFSFLK--TSGNDNY 47

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            T+  L   ++RA++S+   Q+    S+ R ++ ++SF ++L K +   E+    +   K
Sbjct: 48  LTVEHL---DVRAYLSELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKK 104

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K   LPR   EK+      + L  ++   + +D RN A+L +LYG G+R+SE  +LT   
Sbjct: 105 KQLRLPRFFYEKEM-----DALFESAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDA 159

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKP 237
           +    S L + GKG+K R VP     + A+ +Y +     L    Q     +F    G+ 
Sbjct: 160 VDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQ 219

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           + P   +  + QL +   L +    H LRH+FATHLL+NG D+R++Q +LGH  LSTTQI
Sbjct: 220 ITPTGIEYVLNQLIKKSSLNVEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQI 279

Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319
           Y +V  ++    + + Y   HP
Sbjct: 280 YAHVTKES----LQKNYRTFHP 297


>gi|152988673|ref|YP_001351339.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa
           PA7]
 gi|166918894|sp|A6VE54|XERC_PSEA7 RecName: Full=Tyrosine recombinase xerC
 gi|150963831|gb|ABR85856.1| tyrosine recombinase XerC [Pseudomonas aeruginosa PA7]
          Length = 303

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/309 (33%), Positives = 158/309 (51%), Gaps = 27/309 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L++L  ER +S  TL  Y+   R  L  LA    EK  +     L    +R F+++   
Sbjct: 8   FLEHLRSERQVSAHTLDGYQ---RDLLKILAL--AEKAGLTDWNALDTRTLRTFVARLHQ 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q    RSL R LS  + F +YL +           +   K    LPR L+  +AL L+D 
Sbjct: 63  QGQSSRSLARLLSATRGFYQYLLREGRCRHDPANGLSAPKSPRKLPRTLDADRALQLLDG 122

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +     E  +I  R+ A+L L Y  GLR+SE + L  + +   +  +R++GKG+K+R +
Sbjct: 123 AV-----EDDFIARRDQALLELFYSSGLRLSELVGLDLEWLDLKEGLVRVRGKGNKVREL 177

Query: 201 PLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR-RYLG 255
           P+  + R+A+  +  L     P D        +F G  GK L P   Q  +RQ   R LG
Sbjct: 178 PVGKAARQALEAWLPLRAQATPEDG------AVFIGRGGKRLTPRAVQLRVRQAGVRELG 231

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
             L    H LRHSFA+HLL + GDLR++Q +LGH  ++TTQIYT+++ ++    +  +YD
Sbjct: 232 QHLHP--HMLRHSFASHLLESSGDLRAVQELLGHADIATTQIYTHLDFQH----LASVYD 285

Query: 316 QTHPSITQK 324
           + HP   +K
Sbjct: 286 RAHPRAKRK 294


>gi|16803994|ref|NP_465479.1| hypothetical protein lmo1955 [Listeria monocytogenes EGD-e]
 gi|47097098|ref|ZP_00234668.1| integrase/recombinase XerD [Listeria monocytogenes str. 1/2a F6854]
 gi|224498595|ref|ZP_03666944.1| hypothetical protein LmonF1_02414 [Listeria monocytogenes Finland
           1988]
 gi|224501245|ref|ZP_03669552.1| hypothetical protein LmonFR_01770 [Listeria monocytogenes FSL
           R2-561]
 gi|254827160|ref|ZP_05231847.1| integrase/recombinase XerD [Listeria monocytogenes FSL N3-165]
 gi|254899348|ref|ZP_05259272.1| hypothetical protein LmonJ_06029 [Listeria monocytogenes J0161]
 gi|254912513|ref|ZP_05262525.1| tyrosine recombinase XerD [Listeria monocytogenes J2818]
 gi|254936840|ref|ZP_05268537.1| integrase/recombinase XerD [Listeria monocytogenes F6900]
 gi|255028942|ref|ZP_05300893.1| hypothetical protein LmonL_06711 [Listeria monocytogenes LO28]
 gi|34222939|sp|Q8Y5V0|XERD_LISMO RecName: Full=Tyrosine recombinase xerD
 gi|16411408|emb|CAD00033.1| lmo1955 [Listeria monocytogenes EGD-e]
 gi|47014543|gb|EAL05506.1| integrase/recombinase XerD [Listeria monocytogenes str. 1/2a F6854]
 gi|258599542|gb|EEW12867.1| integrase/recombinase XerD [Listeria monocytogenes FSL N3-165]
 gi|258609436|gb|EEW22044.1| integrase/recombinase XerD [Listeria monocytogenes F6900]
 gi|293590498|gb|EFF98832.1| tyrosine recombinase XerD [Listeria monocytogenes J2818]
          Length = 297

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 162/309 (52%), Gaps = 27/309 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  L +ERGLS  T+++YE D   F+ ++    E    +     L  ++I  F++  
Sbjct: 6   EDFLHFLIVERGLSANTIKAYERDLHYFVSYMDVTKE----LTDPNTLERSDIVGFMAFA 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R +    RS+ R ++ ++SF  YL      +   ++ +   K++  LP+ LN       +
Sbjct: 62  RQEGKSPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLN-------L 114

Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           D+V  LL +S  +  +  R+ A++ +LY  GLR++E +SL   ++      ++  GKGDK
Sbjct: 115 DDVEKLLSSSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDK 174

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI------RGKPLNPGVFQRYIRQL 250
            RI+PL  +    + +Y +    +    ++ P +R         G+ L    F + ++ +
Sbjct: 175 ERIIPLGKTATTVLEKYLE----EARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGI 230

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  G+    T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT+V        +
Sbjct: 231 AKESGIEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLR----L 286

Query: 311 MEIYDQTHP 319
            ++Y Q HP
Sbjct: 287 KDVYKQFHP 295


>gi|254831444|ref|ZP_05236099.1| hypothetical protein Lmon1_08823 [Listeria monocytogenes 10403S]
 gi|284802400|ref|YP_003414265.1| hypothetical protein LM5578_2156 [Listeria monocytogenes 08-5578]
 gi|284995542|ref|YP_003417310.1| hypothetical protein LM5923_2107 [Listeria monocytogenes 08-5923]
 gi|284057962|gb|ADB68903.1| hypothetical protein LM5578_2156 [Listeria monocytogenes 08-5578]
 gi|284061009|gb|ADB71948.1| hypothetical protein LM5923_2107 [Listeria monocytogenes 08-5923]
          Length = 297

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 162/309 (52%), Gaps = 27/309 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  L +ERGLS  T+++YE D   F+ ++    E    +     L  ++I  F++  
Sbjct: 6   EDFLHFLIVERGLSANTIKAYERDLHYFVSYMDVTKE----LTDPNTLERSDIVGFMAFA 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R +    RS+ R ++ ++SF  YL      +   ++ +   K++  LP+ LN       +
Sbjct: 62  RQEGKSPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAKGLPKVLN-------L 114

Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           D+V  LL +S  +  +  R+ A++ +LY  GLR++E +SL   ++      ++  GKGDK
Sbjct: 115 DDVEKLLSSSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDK 174

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI------RGKPLNPGVFQRYIRQL 250
            RI+PL  +    + +Y +    +    ++ P +R         G+ L    F + ++ +
Sbjct: 175 ERIIPLGKTATTVLEKYLE----EARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGI 230

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  G+    T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT+V        +
Sbjct: 231 AKESGIEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLR----L 286

Query: 311 MEIYDQTHP 319
            ++Y Q HP
Sbjct: 287 KDVYKQFHP 295


>gi|42783204|ref|NP_980451.1| site-specific tyrosine recombinase XerD [Bacillus cereus ATCC
           10987]
 gi|206976263|ref|ZP_03237171.1| integrase/recombinase XerD [Bacillus cereus H3081.97]
 gi|217961583|ref|YP_002340153.1| site-specific tyrosine recombinase XerD [Bacillus cereus AH187]
 gi|229140825|ref|ZP_04269370.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST26]
 gi|229198213|ref|ZP_04324921.1| Tyrosine recombinase xerD [Bacillus cereus m1293]
 gi|42739132|gb|AAS43059.1| integrase/recombinase XerD [Bacillus cereus ATCC 10987]
 gi|206745459|gb|EDZ56858.1| integrase/recombinase XerD [Bacillus cereus H3081.97]
 gi|217064224|gb|ACJ78474.1| integrase/recombinase XerD [Bacillus cereus AH187]
 gi|228585232|gb|EEK43342.1| Tyrosine recombinase xerD [Bacillus cereus m1293]
 gi|228642615|gb|EEK98901.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST26]
 gi|324327997|gb|ADY23257.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 296

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 161/304 (52%), Gaps = 18/304 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  + +E+GL+K T+ SYE D + ++ +L    + K    +  +++   I  F+   
Sbjct: 6   KDFIHYMVVEKGLAKNTVVSYERDLKSYVKYLQNVEQAK----SFHEVTRLHIVNFLQHL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +      ++L R ++ I+SF ++L + +       +++   +    LP+ L+       V
Sbjct: 62  KENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLS-------V 114

Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           D V  LL T   T     R+ A+L LLY  GLR+SE ++L  +++      +R  GKG+K
Sbjct: 115 DEVEALLQTPKMTSAFGVRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNK 174

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            RI+PL     +AI +Y +    +L    +   LF    G  L+   F + +++L +   
Sbjct: 175 ERIIPLGSLATEAIQKYIEKGRRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEAN 234

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + ++Y 
Sbjct: 235 IEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKDVYK 290

Query: 316 QTHP 319
           Q HP
Sbjct: 291 QFHP 294


>gi|239500991|ref|ZP_04660301.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB900]
          Length = 304

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/310 (30%), Positives = 174/310 (56%), Gaps = 24/310 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+  +I+   S+ T+ +YE D R FL F      +K+ +   R +  +++R ++++R  
Sbjct: 11  WLKERKIQ-NQSEHTITAYERDVRSFLEFCEL---KKVDL---RNVEASDLREYLAQRVE 63

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           Q ++   S++R L+ I+ F+K+ ++ K    +   + +  ++   LP  ++ +    ++D
Sbjct: 64  QDQLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILD 123

Query: 140 NVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             +     + + W+  R+ A+L LLY  GLR++E   LT ++I  ++  +RI GKG+K R
Sbjct: 124 QPMPEKPVDQQLWL--RDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTR 181

Query: 199 IVPLLPSVRKAILEY---YDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           IVP     ++++L +   Y++    FD N ++    F   RG  L P   ++ ++   + 
Sbjct: 182 IVPFGKKAKESLLNWLKIYNIWKGHFDQNASV----FISQRGSALTPRQIEKRVKLQAQR 237

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+ +    H LRH FA+H+LS+ GDLRS+Q +LGH  LSTTQIYT+++     D + ++
Sbjct: 238 AGVNVDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHLAQV 293

Query: 314 YDQTHPSITQ 323
           YDQ HP  T+
Sbjct: 294 YDQAHPRATK 303


>gi|153005549|ref|YP_001379874.1| tyrosine recombinase XerC [Anaeromyxobacter sp. Fw109-5]
 gi|152029122|gb|ABS26890.1| tyrosine recombinase XerC [Anaeromyxobacter sp. Fw109-5]
          Length = 311

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 105/322 (32%), Positives = 153/322 (47%), Gaps = 25/322 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L  E Q +   L  ER  S  T+++Y  D  Q+  +LA         Q +   S   +RA
Sbjct: 8   LPPEVQRFAVYLRTERRASPHTVKAYLTDLSQYAAYLAGAG------QGVVPSSPALVRA 61

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F++ R   + G  SL R LS I++  ++L +  +   +   ++   K+   LP+ L E++
Sbjct: 62  FLA-RAAGEAGATSLGRKLSAIRTLYRFLVREGLAAGNPARSVSGPKRPMRLPQVLPEEE 120

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              LV+   L        ++ R+ A L LLY  GLR+SE   L   +I      +R+ GK
Sbjct: 121 VAALVEAPELAAP-----LEQRDRAFLELLYASGLRVSELTGLDLASIDLSGRLVRVLGK 175

Query: 194 GDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            +K RIVP   S  +A+  Y D     L     +   +  LF   RG  L+P    R + 
Sbjct: 176 RNKERIVPFGASAGEAVRRYLDEARPILAAGRDHATAEEALFLNYRGGRLSPRSVARRLD 235

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GLP     H LRH FATHLL NG DLR IQ +LGH  LSTTQ YT+V      D
Sbjct: 236 RWVLATGLPRHVHPHVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTHV------D 289

Query: 309 W--MMEIYDQTHPSITQKDKKN 328
           W  +  +YD  HP   ++ ++ 
Sbjct: 290 WKRLAAVYDAAHPRAKRERERG 311


>gi|145295553|ref|YP_001138374.1| site-specific tyrosine recombinase XerD [Corynebacterium glutamicum
           R]
 gi|140845473|dbj|BAF54472.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 304

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/306 (31%), Positives = 149/306 (48%), Gaps = 16/306 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + WL +L +ERGLS  TL +Y  D  ++  +L     E   +  IR ++   + +++   
Sbjct: 8   KTWLTHLAVERGLSANTLSNYRRDVERYCDWL-----EAAGLDDIRDITTAHVESYVKDL 62

Query: 79  RTQKIGDRSLKRSLSG-----IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           R    G ++L  S +G      +   K+             ++        LP  L+  +
Sbjct: 63  RRGIDGQQALSASSAGRALIVARGLHKFALMEGEVAADVAADVSPPAMGRHLPDTLSINE 122

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D +  H+   T  +D R+ A++ LLYG G RISEA+ L   ++ +    LRI GK
Sbjct: 123 VALLIDAIP-HSDIATP-VDLRDRALVELLYGTGARISEAIGLAVDDVSEMPEVLRITGK 180

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K RIVP     ++A+ EY       L+      LF   RG PL+       +++    
Sbjct: 181 GSKKRIVPFGSMAQQAVREYLIRARPALSKGKSHALFLNQRGGPLSRQSAWAVLKKTVER 240

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT++ +    D + E+
Sbjct: 241 AGLDKDISPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTHITA----DSLREV 296

Query: 314 YDQTHP 319
           +   HP
Sbjct: 297 WRGAHP 302


>gi|228922841|ref|ZP_04086139.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836896|gb|EEM82239.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 296

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 161/304 (52%), Gaps = 18/304 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  + +E+GL+K T+ SYE D + ++ +L    + K    T  +++   I  F+   
Sbjct: 6   KDFIHYMVVEKGLAKNTVVSYERDLKSYIKYLQNVEQTK----TFHEVTRLHIVNFLQYL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +      ++L R ++ I+SF ++L + +       +++   +    LP+ L+       V
Sbjct: 62  KENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLS-------V 114

Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           D V  LL T   T     R+ A+L LLY  GLR+SE ++L  +++      +R  GKG+K
Sbjct: 115 DEVEALLQTPKMTSAFGIRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNK 174

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            RI+PL     +AI +Y +    +L    +   LF    G  L+   F + +++L +   
Sbjct: 175 ERIIPLGSLATEAIQKYIEKGRRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEAN 234

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + ++Y 
Sbjct: 235 IEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKDVYK 290

Query: 316 QTHP 319
           Q HP
Sbjct: 291 QFHP 294


>gi|319785871|ref|YP_004145346.1| tyrosine recombinase XerC [Pseudoxanthomonas suwonensis 11-1]
 gi|317464383|gb|ADV26115.1| tyrosine recombinase XerC [Pseudoxanthomonas suwonensis 11-1]
          Length = 291

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/306 (31%), Positives = 160/306 (52%), Gaps = 20/306 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q++L++L +ER +S  TL +Y  D  Q L   AF   E +      ++    +R F++  
Sbjct: 5   QDFLEHLRVERAMSPHTLDAYRRDL-QALQDWAFERGEDVV-----RMDGGRLREFVASE 58

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   SL+R LS  +S+  +L K  +   S  + +R  +    LP+ L+  +A+ LV
Sbjct: 59  HRRGLSPTSLQRRLSACRSYYAWLLKHGVIEASPAIGLRAPRAPRKLPQVLDVDEAVQLV 118

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +   + TS     +  R+ A+L L Y  GLR+SE  +L  +++  DQ  + + GKG + R
Sbjct: 119 E---VDTSAP---LGLRDRALLELFYSSGLRLSELCALRWRDLHLDQGLVTVLGKGSRQR 172

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            VP+    R+A+ E+        +  +    F G  G P++    Q  +RQL    GL  
Sbjct: 173 SVPVGSHARRALEEWRSSTGAGSDDFV----FPGRGGGPISQRAVQVRMRQLAARQGLFK 228

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRHSFA+H+L + GDLR +Q +LGH  ++TTQIYT+++ ++    + ++YD  H
Sbjct: 229 HVHPHMLRHSFASHVLESSGDLRGVQELLGHADIATTQIYTHLDFQH----LAKVYDAAH 284

Query: 319 PSITQK 324
           P   +K
Sbjct: 285 PRAKRK 290


>gi|228916729|ref|ZP_04080294.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228935411|ref|ZP_04098229.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228824163|gb|EEM69977.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228842916|gb|EEM87999.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 296

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 161/304 (52%), Gaps = 18/304 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  + +E+GL+K T+ SYE D + ++ +L    + K    +  +++   I  F+   
Sbjct: 6   KDFIHYMVVEKGLAKNTVVSYERDLKSYVKYLQKVEQAK----SFHEVTRLHIVNFLQHL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL--NEKQALT 136
           +      ++L R ++ I+SF ++L + +       +++   +    LP+ L  NE +AL 
Sbjct: 62  KENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVNEVEAL- 120

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
                 L T   T     R+ A+L LLY  GLR+SE ++L  +++      +R  GKG+K
Sbjct: 121 ------LQTPKMTSAFGVRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCVGKGNK 174

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            RI+PL     +AI +Y +    +L    +   LF    G  L+   F + +++L +   
Sbjct: 175 ERIIPLGSLATEAIQKYIEKGRRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEAN 234

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + ++Y 
Sbjct: 235 IEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKDVYK 290

Query: 316 QTHP 319
           Q HP
Sbjct: 291 QFHP 294


>gi|28198608|ref|NP_778922.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa
           Temecula1]
 gi|182681291|ref|YP_001829451.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa M23]
 gi|73920479|sp|Q87DI2|XERC_XYLFT RecName: Full=Tyrosine recombinase xerC
 gi|254799363|sp|B2IA18|XERC_XYLF2 RecName: Full=Tyrosine recombinase xerC
 gi|28056692|gb|AAO28571.1| site-specific recombinase [Xylella fastidiosa Temecula1]
 gi|182631401|gb|ACB92177.1| tyrosine recombinase XerC [Xylella fastidiosa M23]
 gi|307579742|gb|ADN63711.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 294

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 156/308 (50%), Gaps = 19/308 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++   L +ERG+S  TL +Y    R     +A+  ++   +  +  L   +++AF+S  
Sbjct: 6   EDFFAFLHVERGMSSHTLDAYR---RDIGALIAWGGQQ--AVGEVVALDRAQLQAFVSAE 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +  +SL+R LS  + F  +L KR     +    +R  K    LPR L+  +A++ V
Sbjct: 61  HRRGLSAKSLQRRLSACRGFYTWLVKRGHIAVNPAAGLRAPKALRKLPRILDADEAVSFV 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                    +T  +  R+ A+L L Y  GLR+SE   L    +  D   + + GKG + R
Sbjct: 121 -----QIPTDTP-LGLRDRALLELFYSSGLRLSELCGLRWDGLDLDAGLVSVLGKGSRQR 174

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VP+      A+ E+   C        Q P+F G  G P++    Q  I+QL +  G+  
Sbjct: 175 VVPVGSYALSALREW---CASSGG-GAQQPVFPGRYGGPISARAVQVRIKQLAQRQGMAK 230

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRHSFA+HLL + GDLR +Q +LGH  ++TTQIYT+++ +    ++ ++YD  H
Sbjct: 231 HVHPHMLRHSFASHLLESSGDLRGVQELLGHADITTTQIYTHLDFQ----YLSKVYDAAH 286

Query: 319 PSITQKDK 326
           P   +K +
Sbjct: 287 PRARRKAR 294


>gi|169632680|ref|YP_001706416.1| site-specific tyrosine recombinase [Acinetobacter baumannii SDF]
 gi|169151472|emb|CAP00223.1| site-specific tyrosine recombinase [Acinetobacter baumannii]
          Length = 308

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/310 (30%), Positives = 174/310 (56%), Gaps = 24/310 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+  +I+   S+ T+ +YE D R FL F      +K+ +   R +  +++R ++++R  
Sbjct: 15  WLKERKIQ-NQSEHTITAYERDVRSFLEFCEL---KKVDL---RNVEASDLREYLAQRVE 67

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           Q ++   S++R L+ I+ F+K+ ++ K    +   + +  ++   LP  ++ +    ++D
Sbjct: 68  QDQLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILD 127

Query: 140 NVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             +     + + W+  R+ A+L LLY  GLR++E   LT ++I  ++  +RI GKG+K R
Sbjct: 128 QPMPEKPVDQQLWL--RDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTR 185

Query: 199 IVPLLPSVRKAILEY---YDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           IVP     ++++L +   Y++    FD N ++    F   RG  L P   ++ ++   + 
Sbjct: 186 IVPFGKKAKESLLNWLKIYNIWKGHFDQNASV----FISQRGGALTPRQIEKRVKLQAQR 241

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+ +    H LRH FA+H+LS+ GDLRS+Q +LGH  LSTTQIYT+++     D + ++
Sbjct: 242 AGVNVDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHLAQV 297

Query: 314 YDQTHPSITQ 323
           YDQ HP  T+
Sbjct: 298 YDQAHPRATK 307


>gi|262376584|ref|ZP_06069812.1| tyrosine recombinase XerC [Acinetobacter lwoffii SH145]
 gi|262308294|gb|EEY89429.1| tyrosine recombinase XerC [Acinetobacter lwoffii SH145]
          Length = 305

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/307 (31%), Positives = 166/307 (54%), Gaps = 16/307 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+  EI+   SK TLQ+Y  D   FL    F   E++ +  +     T++R F++++  
Sbjct: 10  WLKEREIQ-NQSKHTLQAYARDVSDFL---EFCQREQLNLNDV---EATDLRQFLAEKVE 62

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           Q ++   SL+R LS I+ F+K+ ++ +    +   + +  ++S  LP  ++ +    ++D
Sbjct: 63  QHQLSPSSLQRMLSSIRQFMKWAEQAQHLAFNPADDFQLKRQSRPLPGMVDIETVNQIID 122

Query: 140 NVLLHTS-HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                    +  W+  R+ AIL LLY  GLR++E  +L  ++I  ++  LRI GKG+K R
Sbjct: 123 QPAPENEIQQQMWL--RDKAILELLYSSGLRLAELQNLRIKDIDFNRQLLRITGKGNKTR 180

Query: 199 IVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           IVP     + +++ +  + P ++ +   +  +F   +G PL     +  ++   +  G+ 
Sbjct: 181 IVPFGSKAKASVMAWLQVYPLWNGDFVPEANVFITQKGNPLGARQIENRVKFQAQRAGVN 240

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           +    H LRH FA+H+LSN  DLR++Q +LGH  LSTTQIYT+V+     D + +IYDQ 
Sbjct: 241 VDLHPHLLRHCFASHMLSNSRDLRAVQEMLGHSNLSTTQIYTHVDF----DHLAQIYDQA 296

Query: 318 HPSITQK 324
           HP    K
Sbjct: 297 HPRAQHK 303


>gi|19552635|ref|NP_600637.1| site-specific tyrosine recombinase XerD [Corynebacterium glutamicum
           ATCC 13032]
 gi|62390303|ref|YP_225705.1| site-specific tyrosine recombinase XerD [Corynebacterium glutamicum
           ATCC 13032]
 gi|34222909|sp|Q8NQL5|XERD_CORGL RecName: Full=Tyrosine recombinase xerD
 gi|21324187|dbj|BAB98812.1| Integrase [Corynebacterium glutamicum ATCC 13032]
 gi|41325640|emb|CAF21429.1| INTEGRASE/RECOMBINASE XERD [Corynebacterium glutamicum ATCC 13032]
          Length = 304

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/306 (31%), Positives = 149/306 (48%), Gaps = 16/306 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + WL +L +ERGLS  TL +Y  D  ++  +L     E   +  IR ++   + +++   
Sbjct: 8   KTWLTHLAVERGLSANTLSNYRRDVERYCDWL-----EAAGLDDIRDITTAHVESYVKDL 62

Query: 79  RTQKIGDRSLKRSLSG-----IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           R    G ++L  S +G      +   K+             ++        LP  L+  +
Sbjct: 63  RRGIDGQQALSASSAGRALIVARGLHKFALMEGEVAADVAADVSPPAMGRHLPDTLSINE 122

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D +  H+   T  +D R+ A++ LLYG G RISEA+ L   ++ +    LRI GK
Sbjct: 123 VALLIDAIP-HSDIATP-VDLRDRALVELLYGTGARISEAIGLAVDDVSEMPEVLRITGK 180

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K RIVP     ++A+ EY       L+      LF   RG PL+       +++    
Sbjct: 181 GSKQRIVPFGSMAQQAVREYLVRARPALSKGKSHALFLNQRGGPLSRQSAWAVLKKTVER 240

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT++ +    D + E+
Sbjct: 241 AGLDKDISPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTHITA----DSLREV 296

Query: 314 YDQTHP 319
           +   HP
Sbjct: 297 WRGAHP 302


>gi|229031733|ref|ZP_04187726.1| Tyrosine recombinase xerD [Bacillus cereus AH1271]
 gi|228729617|gb|EEL80604.1| Tyrosine recombinase xerD [Bacillus cereus AH1271]
          Length = 296

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 161/304 (52%), Gaps = 18/304 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  + +E+GL+K T+ SYE D + ++ +L    + K    +  +++   I  F+   
Sbjct: 6   KDFIHYMVVEKGLAKNTVVSYERDLKSYVKYLQNVEQAK----SFHEVTRLHIVNFLQHL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +      ++L R ++ I+SF ++L + +       +++   +    LP+ L+       +
Sbjct: 62  KENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLS-------I 114

Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           D V  LL T   T     R+ A+L LLY  GLR+SE ++L  ++I      +R  GKG+K
Sbjct: 115 DEVEALLQTPKMTSAFGVRDKAMLELLYATGLRVSELIALNLEDIHLTMGFVRCIGKGNK 174

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            RI+PL     +AI +Y +    +L    +   LF    G  L+   F + +++L +   
Sbjct: 175 ERIIPLGSLATEAIQKYIEKGRRELMGKRVVDALFLNHHGNRLSRQGFWKILKRLAKEAN 234

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + ++Y 
Sbjct: 235 IEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKAR----LKDVYK 290

Query: 316 QTHP 319
           Q HP
Sbjct: 291 QFHP 294


>gi|223985629|ref|ZP_03635679.1| hypothetical protein HOLDEFILI_02985 [Holdemania filiformis DSM
           12042]
 gi|223962396|gb|EEF66858.1| hypothetical protein HOLDEFILI_02985 [Holdemania filiformis DSM
           12042]
          Length = 323

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/316 (34%), Positives = 155/316 (49%), Gaps = 17/316 (5%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT--IQTIRQ 65
           E    +L+   + +++ +   R  S  T  SY  D  +F  +LA   E+KIT   Q  + 
Sbjct: 9   EAAKKQLMSVAEEFVEFIVARRSGSPATADSYGRDLERFAAYLA---EKKITDFSQVDKA 65

Query: 66  LSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           + +  +    S + T+ KI D S  R LS ++SF  YL + K    +    +R  K + +
Sbjct: 66  VMFDYVTLLRSGKITRCKISDSSFSRMLSTLRSFYHYLIRYKGVKVNPTRGLRAPKLNRT 125

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           +P  L   Q +TL D+  L+          RN AIL  +Y CGLR+SE  SLT   +  +
Sbjct: 126 IPEFLTFDQMMTLFDSFDLNDPAAL-----RNRAILETMYACGLRVSEVCSLTLAELDLN 180

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           +  L + GKGDK RIVP    +R  +  Y  D     L       +F   RG P+ P   
Sbjct: 181 ERILTVTGKGDKQRIVPFYKRLRTLLTRYLRDSRALYLKEEHGF-VFVSQRGAPITPRAV 239

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           Q  + Q  +  GL      H LRHSFATHLL NG DLR++Q +LGH  LSTTQIYT+V  
Sbjct: 240 QLILAQAGQDAGLNQPLHPHILRHSFATHLLDNGVDLRTVQELLGHSSLSTTQIYTHVTV 299

Query: 304 KNGGDWMMEIYDQTHP 319
               D + +  D  HP
Sbjct: 300 ----DRLKQSVDAAHP 311


>gi|270308385|ref|YP_003330443.1| integrase/recombinase [Dehalococcoides sp. VS]
 gi|270154277|gb|ACZ62115.1| integrase/recombinase [Dehalococcoides sp. VS]
          Length = 302

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 155/302 (51%), Gaps = 9/302 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q++L  L +E+G S+ T ++YE D RQ + F      +   I      +   + A++   
Sbjct: 6   QSFLNYLMVEKGFSENTTEAYENDLRQMMTFADKEAAKFGKIPGWENFTRQTMLAYMLDL 65

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + +     ++ R ++  KSF  ++       E+   N+   K    LP A++  Q   L+
Sbjct: 66  KERNYAITTVVRKMAAAKSFFNFMVAEGKLKENPTENISTPKVGKPLPDAISISQVRALL 125

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +  +   S E K    R+ A+L LLY  G+R++E ++L   +I   +  +R  GKG K R
Sbjct: 126 NQPVKSGSSEAK----RDKAMLELLYASGMRVTELVNLNVLDIDLKEGFVRCFGKGRKER 181

Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           ++P+ P   ++I EY  ++ P  +    +  LF   RG  L      + ++   R  GL 
Sbjct: 182 MIPIYPQAAQSIQEYLTEIRPNLVRAETEKALFLNRRGDRLTRQGLWQILKGYAREAGLD 241

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T HTLRHSFATH+LS G DLRS+Q +LGH  +STTQIYT++ S++    +   Y++ 
Sbjct: 242 DVVTPHTLRHSFATHMLSGGADLRSVQELLGHANISTTQIYTHLTSEH----IRRSYEKA 297

Query: 318 HP 319
           HP
Sbjct: 298 HP 299


>gi|256959059|ref|ZP_05563230.1| integrase [Enterococcus faecalis DS5]
 gi|257079090|ref|ZP_05573451.1| phage integrase [Enterococcus faecalis JH1]
 gi|294781639|ref|ZP_06746975.1| tyrosine recombinase XerC [Enterococcus faecalis PC1.1]
 gi|307270938|ref|ZP_07552221.1| tyrosine recombinase XerC [Enterococcus faecalis TX4248]
 gi|256949555|gb|EEU66187.1| integrase [Enterococcus faecalis DS5]
 gi|256987120|gb|EEU74422.1| phage integrase [Enterococcus faecalis JH1]
 gi|294451335|gb|EFG19801.1| tyrosine recombinase XerC [Enterococcus faecalis PC1.1]
 gi|306512436|gb|EFM81085.1| tyrosine recombinase XerC [Enterococcus faecalis TX4248]
 gi|315037059|gb|EFT48991.1| tyrosine recombinase XerC [Enterococcus faecalis TX0027]
          Length = 299

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 161/322 (50%), Gaps = 28/322 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ME  N PE+ +  L+           +ERG S+ T ++Y+ D + F  FL   T      
Sbjct: 1   MEEKNWPELFARYLI-----------VERGYSEKTKKAYQEDIQHFFSFLK--TSGNDNY 47

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            T+  L   ++RA++S+   Q+    S+ R ++ ++SF ++L K +   E+    +   K
Sbjct: 48  LTVEHL---DVRAYLSELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKK 104

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K   LPR   EK+      + L  ++   + +D RN A+L +LYG G+R+SE  +LT   
Sbjct: 105 KQLRLPRFFYEKEM-----DALFESAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDA 159

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKP 237
           +    S L + GKG+K R VP     + A+ +Y +     L    Q     +F    G+ 
Sbjct: 160 VDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENSRALLMTKYQKKHPYVFVNHHGEQ 219

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           + P   +  + QL +   L      H LRH+FATHLL+NG D+R++Q +LGH  LSTTQI
Sbjct: 220 ITPTGIEYVLNQLIKKSSLNAEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQI 279

Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319
           Y +V  ++    + + Y   HP
Sbjct: 280 YAHVTKES----LQKNYRTFHP 297


>gi|162447539|ref|YP_001620671.1| site-specific tyrosine recombinase [Acholeplasma laidlawii PG-8A]
 gi|161985646|gb|ABX81295.1| site-specific tyrosine recombinase [Acholeplasma laidlawii PG-8A]
          Length = 301

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 101/314 (32%), Positives = 168/314 (53%), Gaps = 17/314 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L+K+   +L N   E GLSK T+ +Y  D + +  FL  Y +    ++ +  +    I  
Sbjct: 4   LIKDFSYYLNN---ELGLSKNTIDAYMRDLKDYESFLDKYHK----LKDVDNIQSKHIEG 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++   + + +  +++ R L+ IKSF K+L   K   E     +   K   +LP  L+  +
Sbjct: 57  YLKSIKKKGLSAKTISRKLTSIKSFHKFLLMEKEVDEDVTHKIARPKIEKTLPTVLSVDE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
            +++++ +      ++  +  RN A+L L+YG GLR+SE L++  ++I   QS + + GK
Sbjct: 117 VISILEVI-----DKSTTLGLRNMALLELIYGSGLRVSELLNIKLKDIHMQQSYVIVTGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R+VP+      AI  Y      DL       LF   +GK L+   F + +++L   
Sbjct: 172 GSKERMVPISDMAIIAIRNYLVKARDDLIKEKTDYLFINNQGKTLSRVGFFKVLKKLASE 231

Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             L P   + HTLRHSFATHLL NG DLRS+Q++LGH  +STTQIYT+++       + +
Sbjct: 232 ANLDPEKVSPHTLRHSFATHLLENGMDLRSLQNLLGHEDISTTQIYTHISQSR----LKQ 287

Query: 313 IYDQTHPSITQKDK 326
           +Y++THP   + +K
Sbjct: 288 VYNKTHPRAKENNK 301


>gi|30022176|ref|NP_833807.1| site-specific tyrosine recombinase XerD [Bacillus cereus ATCC
           14579]
 gi|206971233|ref|ZP_03232184.1| integrase/recombinase XerD [Bacillus cereus AH1134]
 gi|218235095|ref|YP_002368894.1| site-specific tyrosine recombinase XerD [Bacillus cereus B4264]
 gi|218899252|ref|YP_002447663.1| integrase/recombinase XerD [Bacillus cereus G9842]
 gi|228902600|ref|ZP_04066751.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 4222]
 gi|228909920|ref|ZP_04073741.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 200]
 gi|228941242|ref|ZP_04103795.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228954374|ref|ZP_04116400.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228960355|ref|ZP_04122008.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228974174|ref|ZP_04134744.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980765|ref|ZP_04141070.1| Tyrosine recombinase xerD [Bacillus thuringiensis Bt407]
 gi|229047783|ref|ZP_04193363.1| Tyrosine recombinase xerD [Bacillus cereus AH676]
 gi|229071595|ref|ZP_04204813.1| Tyrosine recombinase xerD [Bacillus cereus F65185]
 gi|229081347|ref|ZP_04213850.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-2]
 gi|229111564|ref|ZP_04241115.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-15]
 gi|229129370|ref|ZP_04258341.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-Cer4]
 gi|229146665|ref|ZP_04275032.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST24]
 gi|229152292|ref|ZP_04280485.1| Tyrosine recombinase xerD [Bacillus cereus m1550]
 gi|229180370|ref|ZP_04307713.1| Tyrosine recombinase xerD [Bacillus cereus 172560W]
 gi|296504585|ref|YP_003666285.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           BMB171]
 gi|29897733|gb|AAP11008.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 14579]
 gi|206734005|gb|EDZ51176.1| integrase/recombinase XerD [Bacillus cereus AH1134]
 gi|218163052|gb|ACK63044.1| integrase/recombinase XerD [Bacillus cereus B4264]
 gi|218543889|gb|ACK96283.1| integrase/recombinase XerD [Bacillus cereus G9842]
 gi|228603117|gb|EEK60595.1| Tyrosine recombinase xerD [Bacillus cereus 172560W]
 gi|228631254|gb|EEK87890.1| Tyrosine recombinase xerD [Bacillus cereus m1550]
 gi|228636835|gb|EEK93298.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST24]
 gi|228653975|gb|EEL09842.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-Cer4]
 gi|228671946|gb|EEL27239.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-15]
 gi|228701969|gb|EEL54452.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-2]
 gi|228711531|gb|EEL63488.1| Tyrosine recombinase xerD [Bacillus cereus F65185]
 gi|228723575|gb|EEL74940.1| Tyrosine recombinase xerD [Bacillus cereus AH676]
 gi|228778934|gb|EEM27196.1| Tyrosine recombinase xerD [Bacillus thuringiensis Bt407]
 gi|228785514|gb|EEM33523.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228799379|gb|EEM46343.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228805306|gb|EEM51899.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228818401|gb|EEM64473.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228849755|gb|EEM94588.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 200]
 gi|228857041|gb|EEN01550.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 4222]
 gi|296325637|gb|ADH08565.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           BMB171]
 gi|326941864|gb|AEA17760.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 296

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 161/304 (52%), Gaps = 18/304 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  + +E+GL+K T+ SYE D + ++ +L    + K    T  +++   I  F+   
Sbjct: 6   KDFIHYMVVEKGLAKNTVVSYERDLKSYVKYLQNVEQTK----TFHEVTRLHIVNFLQYL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +      ++L R ++ I+SF ++L + +       +++   +    LP+ L+       V
Sbjct: 62  KENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLS-------V 114

Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           D V  LL T   T     R+ A+L LLY  GLR+SE ++L  +++      +R  GKG+K
Sbjct: 115 DEVEALLQTPKMTSAFGIRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNK 174

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            RI+PL     +AI +Y +    +L    +   LF    G  L+   F + +++L +   
Sbjct: 175 ERIIPLGSLATEAIQKYIEKGRRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEAN 234

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + ++Y 
Sbjct: 235 IEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKDVYK 290

Query: 316 QTHP 319
           Q HP
Sbjct: 291 QFHP 294


>gi|217967855|ref|YP_002353361.1| tyrosine recombinase XerD [Dictyoglomus turgidum DSM 6724]
 gi|217336954|gb|ACK42747.1| tyrosine recombinase XerD [Dictyoglomus turgidum DSM 6724]
          Length = 296

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 105/312 (33%), Positives = 164/312 (52%), Gaps = 25/312 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  L+ E+ +S  T+ SY  D   F+IFL    +EK+ I+ +++  +   R  +S  
Sbjct: 6   EDFLFYLKFEKNMSPNTIDSYRRDLEDFIIFLQ---KEKVNIKNLKREEWQ--RYLVSLY 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
              KI  +S+ R +S I+SFLK+L +      +    M   K    LP  L+ K+    +
Sbjct: 61  NRYKI--KSIARKISSIRSFLKFLLREGYINRNYSSFMIIPKIPMYLPEILDNKE----I 114

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +N  L        +  RN AIL   Y  G+R+SE ++L  Q+I  ++  +R  GKGDK R
Sbjct: 115 EN-FLKIPDPLSPLGIRNIAILETFYATGMRVSELVNLDVQSINLEEKYVRCFGKGDKER 173

Query: 199 IVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           I+PL    + S++K +L      P D     +  LF   +G+ +        I+   + L
Sbjct: 174 IIPLGDYAVESLKKYLLVRDSFNPKD-----EKALFLNKKGERITRQGVWFIIKTYSKIL 228

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           GLP   + HT RHSFATHLLSNG D+R +Q +LGH  ++TTQIYT++ S      + E+Y
Sbjct: 229 GLPKKVSPHTFRHSFATHLLSNGADIRIVQELLGHSDVATTQIYTHIVSSK----LHEVY 284

Query: 315 DQTHPSITQKDK 326
            + HP   + DK
Sbjct: 285 QKAHPLTRRNDK 296


>gi|149200277|ref|ZP_01877298.1| integrase/recombinase [Lentisphaera araneosa HTCC2155]
 gi|149136641|gb|EDM25073.1| integrase/recombinase [Lentisphaera araneosa HTCC2155]
          Length = 318

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 165/305 (54%), Gaps = 17/305 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEIRAFISKRRTQK 82
           L+ E+  S  T ++Y  D  +F+     + +E I  Q++  +Q+     + +I   +  K
Sbjct: 17  LKTEKNFSLHTQKAYFFDIVEFIT--QTWGDEAIEAQSLAWKQIDKNAAKGYIFSLQESK 74

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           I   +L R  S ++S   + ++ ++ + +   +++  KK  SLP  L+ +   TL+ +  
Sbjct: 75  ISKNTLLRKCSSLRSLYNFFQREELQSTNPFQDIKAAKKDKSLPLILSREDISTLLSSPA 134

Query: 143 LHTSHE----TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            + + +      ++ +R++AIL ++Y  GLRI EAL +    I  ++STL+I GKG K R
Sbjct: 135 PYWAQKKGKNNDFMASRDAAILEIIYSGGLRIQEALDINFDQINLEESTLKIFGKGKKQR 194

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLN---IQLPLFRGIRG-KPLNPGVFQRYIRQLRRYL 254
              L    ++A+ +Y+  C  +  LN      P+F  ++  K L+    QR ++   +  
Sbjct: 195 TAYLGNPAKQALEQYF-ACRKNAELNWTSANDPVFINLKDLKRLSARSIQRNLKAYLQSC 253

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            LP   T H LRHSFATHLL  G DLRS+Q +LGH  LSTTQIYT++++    D +++ Y
Sbjct: 254 QLPPDITPHKLRHSFATHLLDAGADLRSVQELLGHENLSTTQIYTHIST----DRLLQAY 309

Query: 315 DQTHP 319
           DQ HP
Sbjct: 310 DQAHP 314


>gi|169795024|ref|YP_001712817.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE]
 gi|301345401|ref|ZP_07226142.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB056]
 gi|301511585|ref|ZP_07236822.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB058]
 gi|332854278|ref|ZP_08435278.1| putative tyrosine recombinase XerC [Acinetobacter baumannii
           6013150]
 gi|332865654|ref|ZP_08436480.1| putative tyrosine recombinase XerC [Acinetobacter baumannii
           6013113]
 gi|169147951|emb|CAM85814.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE]
 gi|332728094|gb|EGJ59483.1| putative tyrosine recombinase XerC [Acinetobacter baumannii
           6013150]
 gi|332735175|gb|EGJ66255.1| putative tyrosine recombinase XerC [Acinetobacter baumannii
           6013113]
          Length = 308

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 104/313 (33%), Positives = 174/313 (55%), Gaps = 30/313 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+  +I+   S+ T+ +YE D R FL F      +K+ +   R +  +++R ++++R  
Sbjct: 15  WLKERKIQ-NQSEHTITAYERDVRSFLEFCEL---KKVDL---RNVEASDLREYLAQRVE 67

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           Q ++   S++R L+ I+ F+K+ ++ K   E N  +   LK+    PR L     +  V+
Sbjct: 68  QDQLSSSSMQRHLTSIRQFMKWAEQGKYL-EINPTDDFKLKRQ---PRPLPGMIDIETVN 123

Query: 140 NVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            +L     E K ID     R+ A+L LLY  GLR++E   LT ++I  ++  +RI GKG+
Sbjct: 124 QILDQPMPE-KPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGN 182

Query: 196 KIRIVPLLPSVRKAILEY---YDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           K RIVP     ++++L +   Y++    FD N ++    F   RG  L P   ++ ++  
Sbjct: 183 KTRIVPFGKKAKESLLNWLKIYNIWKGHFDQNASV----FISQRGGALTPRQIEKRVKLQ 238

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  G+ +    H LRH FA+H+LS+ GDLRS+Q +LGH  LSTTQIYT+++     D +
Sbjct: 239 AQRAGVNVDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHL 294

Query: 311 MEIYDQTHPSITQ 323
            ++YDQ HP  T+
Sbjct: 295 AQVYDQAHPRATK 307


>gi|229086660|ref|ZP_04218828.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-44]
 gi|228696607|gb|EEL49424.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-44]
          Length = 296

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 160/302 (52%), Gaps = 14/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  + +E+GL+K T+ SYE D + ++ +L    +    I+T  +++   I  F+   
Sbjct: 6   KDFIHYMIVEKGLAKNTVVSYERDLKSYVKYLQNVEQ----IKTFHEVTRIHIVNFLQYL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +      ++L R ++ I+SF ++L + ++      +++   +    LP+ L+  +     
Sbjct: 62  KENGKSSKTLARHIASIRSFHQFLLRERVVEHDPSVHIETPQGERKLPKVLSVGEV---- 117

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL T   T     R+ A+L LLY  GLR+SE ++L  +++      +R  GKG+K R
Sbjct: 118 -EALLQTPKATSAFGIRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKER 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           I+PL     +AI  Y +    +L     +  LF    G  L+   F + +++L +   + 
Sbjct: 177 IIPLGSLATEAIQRYIEKGRRELVGKKTVDALFLNHHGNRLSRQGFWKILKRLAKEANIE 236

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + ++Y Q 
Sbjct: 237 KELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKDVYKQF 292

Query: 318 HP 319
           HP
Sbjct: 293 HP 294


>gi|256827378|ref|YP_003151337.1| tyrosine recombinase XerD [Cryptobacterium curtum DSM 15641]
 gi|256583521|gb|ACU94655.1| tyrosine recombinase XerD [Cryptobacterium curtum DSM 15641]
          Length = 302

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 105/306 (34%), Positives = 155/306 (50%), Gaps = 18/306 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ERG +  T+++YE D  +++ FLA        I +   ++   I AF S  
Sbjct: 6   REFLSYLRVERGAATSTVRAYEHDLTRYVEFLASLQPAGTAI-SWSHITRDNIVAFESSL 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + Q +   S  R+LS IKSF ++L+     +++    +   KK   LP  L+       +
Sbjct: 65  KDQGLALTSRARALSSIKSFHRFLEVDGRCSKNPASLISLPKKPQRLPDVLS-------I 117

Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           D V  LL +S   + +D R+ A+L +LYGCGLR SE   L    +  D   L ++GKGDK
Sbjct: 118 DTVGRLLDSSIGDRPVDLRDRALLEVLYGCGLRASELCGLDVDRVNTDDGVLLVRGKGDK 177

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            RIVPL  +  KA+ +Y +     L        + +F   RG  L      R +R     
Sbjct: 178 ERIVPLAGTAEKALCDYLEHGRPVLARAGRTSTMAVFLNARGSRLTRQSVHRIVRNAGLR 237

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +G+  +   HTLRHS ATHLL  G DLR IQ +LGH  ++TTQIYT+V   +    + E 
Sbjct: 238 VGID-NLHPHTLRHSCATHLLEGGADLRIIQDMLGHSDIATTQIYTHVQQTH----LQEE 292

Query: 314 YDQTHP 319
           Y   HP
Sbjct: 293 YRSAHP 298


>gi|297620964|ref|YP_003709101.1| Tyrosine recombinase XerD [Waddlia chondrophila WSU 86-1044]
 gi|297376265|gb|ADI38095.1| Tyrosine recombinase XerD [Waddlia chondrophila WSU 86-1044]
          Length = 292

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/306 (31%), Positives = 165/306 (53%), Gaps = 16/306 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++++  ++L  L  E+GL++ T+++Y+ D   F+  L     E   IQ   ++   EI  
Sbjct: 1   MIEQLDDFLIYLGSEKGLTQNTIEAYQRDVFSFISHL-----ESKGIQGFNEVGQEEIVD 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+S  +++++   ++ R L  IK F ++LK+  +   +  L +++ K    +P  L  ++
Sbjct: 56  FLSYLKSRQLAVSTISRHLIAIKVFFRFLKREGVVENNVSLYLQSPKGWQIIPDVLTMEE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++     TS        R+ AIL LLY CGLR+SE   +  +++  ++ T+R+ GK
Sbjct: 116 MEILLNQPDPETSE-----GVRDRAILELLYACGLRVSELCQMKIEDL--EEETVRVFGK 168

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K RIVPL     +AI  Y        +++    LF   RGKP+N  +  + I++    
Sbjct: 169 GRKERIVPLGSHASQAINRYLAKRADCKSIDEAGYLFVNKRGKPMNRVLIWKMIKEYGAQ 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+  S + HT+RHSFATHLL NG +LR IQ +LGH  +S+T  YT+++  +    +   
Sbjct: 229 AGITKSLSPHTMRHSFATHLLDNGAELRVIQEMLGHASISSTDRYTHISRIH----LQNA 284

Query: 314 YDQTHP 319
           +D+ HP
Sbjct: 285 FDRYHP 290


>gi|323340732|ref|ZP_08080984.1| integrase/recombinase XerD [Lactobacillus ruminis ATCC 25644]
 gi|323091855|gb|EFZ34475.1| integrase/recombinase XerD [Lactobacillus ruminis ATCC 25644]
          Length = 300

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 170/310 (54%), Gaps = 17/310 (5%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            EL +   ++L  L+ ERGLS+ T+ SY  D +QF+ +L   +E KIT   +  +    I
Sbjct: 4   IELQRILNDYLHYLKAERGLSENTVSSYGLDLQQFINYL---SEHKIT--DLNDVDKQVI 58

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
             ++     +   + S+ R ++ ++ F + +K+ +   +  ++++   K    LP  L+ 
Sbjct: 59  VDYLDYLMNKGKANASIIRCVTSLRKFFQSMKQDEKIQDDPMISIETPKGEKHLPEVLSI 118

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           ++       +LL+    ++ +  RN AIL L+Y  GLR+SE ++L  +++  D   ++  
Sbjct: 119 EEV-----EMLLNAPDTSQTLGIRNRAILELMYATGLRVSEVVNLKLEDLHLDVGIIQTM 173

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLN-PGVFQRYIRQ 249
           GKG K RIVP+       I  Y +    +L  N + P LF    G+ L   G+++    +
Sbjct: 174 GKGRKERIVPIGDEAIVWINNYLNDARPELCKNKRSPFLFVNFHGERLTRQGIWKNLKNE 233

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           +++  G+  + T HTLRHSFATH+L NG DLR +Q +LGH  +STTQIYT+++ K     
Sbjct: 234 VKK-AGISKNVTPHTLRHSFATHILENGADLRIVQELLGHSDISTTQIYTHISKKR---- 288

Query: 310 MMEIYDQTHP 319
           + +IYD++HP
Sbjct: 289 LSKIYDESHP 298


>gi|229192302|ref|ZP_04319267.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 10876]
 gi|228591252|gb|EEK49106.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 10876]
          Length = 296

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 161/304 (52%), Gaps = 18/304 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  + +E+GL+K T+ SYE D + ++ +L    + K    T  +++   I  F+   
Sbjct: 6   KDFIHYMVVEKGLAKNTVVSYERDLKSYVKYLQNVEQTK----TFHEVTRLHIVNFLQYL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +      ++L R ++ I+SF ++L + +       +++   +    LP+ L+       V
Sbjct: 62  KENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLS-------V 114

Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           D V  LL T   T     R+ A+L LLY  GLR+SE ++L  +++      +R  GKG+K
Sbjct: 115 DEVEALLQTPKMTSAFGIRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNK 174

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            RI+PL     +AI +Y +    +L    +   LF    G  L+   F + +++L +   
Sbjct: 175 ERIIPLGSLATEAIQKYIEKGRRELIGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEAN 234

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + ++Y 
Sbjct: 235 IEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKDVYK 290

Query: 316 QTHP 319
           Q HP
Sbjct: 291 QFHP 294


>gi|319764396|ref|YP_004128333.1| tyrosine recombinase xerc [Alicycliphilus denitrificans BC]
 gi|330826617|ref|YP_004389920.1| tyrosine recombinase XerC [Alicycliphilus denitrificans K601]
 gi|317118957|gb|ADV01446.1| tyrosine recombinase XerC [Alicycliphilus denitrificans BC]
 gi|329311989|gb|AEB86404.1| tyrosine recombinase XerC [Alicycliphilus denitrificans K601]
          Length = 320

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 159/325 (48%), Gaps = 27/325 (8%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  E   +L+++ +E+ L+  TL  Y  D ++   F A        +  +R L+   +R
Sbjct: 10  QLPPEALQYLEHVRVEKRLAARTLTLYTLDLQRLAAFAA-----DAGLPLLR-LTGAHVR 63

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F+++        R +   LSG + F  +  ++ +   + + ++R  K    LP+AL   
Sbjct: 64  RFVAQMHAAGRSGRGIALILSGWRGFYAWAARQGLVPHNPVQDVRAPKAPKPLPKALPVD 123

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQS---- 186
           +A+ L ++     S    W++AR++AI+ LLYGCGLR+ E   L + P      Q     
Sbjct: 124 EAVRLAEH---EESGADPWLEARDAAIVELLYGCGLRVGELVGLDVAPSPAAHQQGRGWI 180

Query: 187 -----TLRIQGKGDKIRIVPLLPSVRKAILEYYDL--CPFDLNLNIQLPLFRGIRGKPLN 239
                   + GKG K R VP+  +  +A+  +  +   PF         LF G RG  L+
Sbjct: 181 DLQAGEAHVFGKGAKRRSVPVGRAAAEALRGWLAVRAQPFG-GAAADAALFVGRRGARLS 239

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                  +RQ  +  GL      H LRHSFA+HLL + GDLR++Q +LGH  ++TTQ+YT
Sbjct: 240 AQSVWLRLRQRSQRAGLTTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYT 299

Query: 300 NVNSKNGGDWMMEIYDQTHPSITQK 324
            ++ ++    +  +YDQ HP   +K
Sbjct: 300 RLDFQH----LARVYDQAHPRARRK 320


>gi|225174860|ref|ZP_03728857.1| tyrosine recombinase XerD [Dethiobacter alkaliphilus AHT 1]
 gi|225169500|gb|EEG78297.1| tyrosine recombinase XerD [Dethiobacter alkaliphilus AHT 1]
          Length = 295

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 158/302 (52%), Gaps = 15/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  L +E+GL+K TL+SY  D R +  +L     ++  I ++ + S + I  ++   
Sbjct: 6   RDFIHYLSVEKGLAKNTLESYNRDLRTYYTYL-----KQNGITSLEETSRSNIVGYLLSL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +       +L R+++ I+SF  YL + +   E+    + + K    LPR L  ++     
Sbjct: 61  QNMGKATSTLSRNMASIRSFYNYLFQERHLVENPAAELESPKLEKKLPRVLTPQEM---- 116

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            ++LL    +T+    R+ A+L ++Y  G+R+SE +SL   ++  D   +R  GKG K R
Sbjct: 117 -DLLLEQPDQTQVTGIRDKAMLEVIYATGIRVSELMSLDIGDVNLDAGFIRCLGKGSKER 175

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           I+PL     + +  Y +   P  +    +  LF    G  L    F + +++     G+ 
Sbjct: 176 IIPLGSVAIRNVGRYLNEGRPKLVRQAGEASLFVNQHGNRLTRQGFWKILKKYATRAGIT 235

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T HT+RHSFATHLL NG DLRS+Q +LGH  +STTQIYT V        + ++Y+++
Sbjct: 236 KEITPHTMRHSFATHLLENGADLRSVQEMLGHADISTTQIYTQVTKHK----LRDVYEKS 291

Query: 318 HP 319
           HP
Sbjct: 292 HP 293


>gi|229174766|ref|ZP_04302290.1| Tyrosine recombinase xerD [Bacillus cereus MM3]
 gi|228608756|gb|EEK66054.1| Tyrosine recombinase xerD [Bacillus cereus MM3]
          Length = 296

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 161/304 (52%), Gaps = 18/304 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  + +E+GL+K T+ SYE D + ++ +L    + K    +  +++   I  F+   
Sbjct: 6   KDFIHYMVVEKGLAKNTVVSYERDLKSYVKYLQNVEQAK----SFHEVTRLHIVNFLQHL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +      ++L R ++ I+SF ++L + +       +++   +    LP+ L+       +
Sbjct: 62  KENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLS-------I 114

Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           D V  LL T   T     R+ A+L LLY  GLR+SE ++L  +++      +R  GKG+K
Sbjct: 115 DEVEALLQTPKMTSAFGVRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNK 174

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            RI+PL     +AI +Y +    +L    +   LF    G  L+   F + +++L +   
Sbjct: 175 ERIIPLGSLATEAIQKYIEKGRRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEAN 234

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + ++Y 
Sbjct: 235 IEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKAR----LKDVYK 290

Query: 316 QTHP 319
           Q HP
Sbjct: 291 QFHP 294


>gi|315282996|ref|ZP_07871279.1| tyrosine recombinase XerD [Listeria marthii FSL S4-120]
 gi|313613367|gb|EFR87228.1| tyrosine recombinase XerD [Listeria marthii FSL S4-120]
          Length = 297

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 165/309 (53%), Gaps = 27/309 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  L +ERGLS  T+++Y+ D   F+ ++   T + +T   I  L  ++I  F++  
Sbjct: 6   EDFLHFLIVERGLSANTIKAYQRDLHYFVSYME--TSKNLTDPNI--LERSDIVGFMAFA 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R +    RS+ R ++ ++SF  YL      +   ++ +   K++ SLP+ LN       +
Sbjct: 62  RQEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQSLPKVLN-------L 114

Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           D+V  LL +S  +  +  R+ A++ +LY  GLR++E + L   ++      ++  GKGDK
Sbjct: 115 DDVEKLLSSSDTSTPLGLRDQAMMEILYATGLRVTELVRLKMDDLHLHMGFIQTIGKGDK 174

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI------RGKPLNPGVFQRYIRQL 250
            RI+PL  +    + +Y +    +    ++ P +R         G+ L    F + ++ +
Sbjct: 175 ERIIPLGKTATTVLEQYLE----EARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGI 230

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  G+    T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT+V        +
Sbjct: 231 AKESGIEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLR----L 286

Query: 311 MEIYDQTHP 319
            ++Y Q HP
Sbjct: 287 KDVYKQFHP 295


>gi|256965045|ref|ZP_05569216.1| phage integrase [Enterococcus faecalis HIP11704]
 gi|307273143|ref|ZP_07554389.1| tyrosine recombinase XerC [Enterococcus faecalis TX0855]
 gi|256955541|gb|EEU72173.1| phage integrase [Enterococcus faecalis HIP11704]
 gi|306510128|gb|EFM79152.1| tyrosine recombinase XerC [Enterococcus faecalis TX0855]
          Length = 299

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 161/322 (50%), Gaps = 28/322 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ME  N PE+ +  L+           +ERG S+ T ++Y+ D + F  FL   T      
Sbjct: 1   MEEKNWPELFARYLI-----------VERGYSEKTKKAYQEDIQHFFSFLK--TSGNDNY 47

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            T+  L   ++RA++S+   Q+    S+ R ++ ++SF ++L K +   E+    +   K
Sbjct: 48  LTVEHL---DVRAYLSELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKK 104

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K   LPR   EK+      + L  ++   + +D RN A+L +LYG G+R+SE  +LT   
Sbjct: 105 KELRLPRFFYEKEM-----DALFESAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDA 159

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKP 237
           +    S L + GKG+K R VP     + A+ +Y +     L    Q     +F    G+ 
Sbjct: 160 VDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQ 219

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           + P   +  + QL +   L      H LRH+FATHLL+NG D+R++Q +LGH  LSTTQI
Sbjct: 220 ITPTGIEYVLNQLIKKSSLNAEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQI 279

Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319
           Y +V  ++    + + Y   HP
Sbjct: 280 YAHVTKES----LQKNYRTFHP 297


>gi|257085103|ref|ZP_05579464.1| phage integrase [Enterococcus faecalis Fly1]
 gi|256993133|gb|EEU80435.1| phage integrase [Enterococcus faecalis Fly1]
 gi|315168954|gb|EFU12971.1| tyrosine recombinase XerC [Enterococcus faecalis TX1341]
          Length = 299

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 161/322 (50%), Gaps = 28/322 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ME  N PE+ +  L+           +ERG S+ T ++Y+ D + F  FL   T      
Sbjct: 1   MEEKNWPELFARYLI-----------VERGYSEKTKKAYQEDIQHFFSFLK--TSGNDNY 47

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            T+  L   ++RA++S+   Q+    S+ R ++ ++SF ++L K +   E+    +   K
Sbjct: 48  LTVEHL---DVRAYLSELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKK 104

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K   LPR   EK+      + L  ++   + +D RN A+L +LYG G+R+SE  +LT   
Sbjct: 105 KQLRLPRFFYEKEM-----DALFESAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDA 159

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKP 237
           +    S L + GKG+K R VP     + A+ +Y +     L    Q     +F    G+ 
Sbjct: 160 VDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGRALLMTKYQKKHPYIFVNHHGEQ 219

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           + P   +  + QL +   L      H LRH+FATHLL+NG D+R++Q +LGH  LSTTQI
Sbjct: 220 ITPTGIEYVLNQLIKKSSLNAEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQI 279

Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319
           Y +V  ++    + + Y   HP
Sbjct: 280 YAHVTKES----LQKNYRTFHP 297


>gi|213158313|ref|YP_002320364.1| tyrosine recombinase XerC [Acinetobacter baumannii AB0057]
 gi|215482572|ref|YP_002324764.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294]
 gi|301594795|ref|ZP_07239803.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB059]
 gi|213057473|gb|ACJ42375.1| tyrosine recombinase XerC [Acinetobacter baumannii AB0057]
 gi|213986400|gb|ACJ56699.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294]
          Length = 304

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 104/313 (33%), Positives = 174/313 (55%), Gaps = 30/313 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+  +I+   S+ T+ +YE D R FL F      +K+ +   R +  +++R ++++R  
Sbjct: 11  WLKERKIQ-NQSEHTITAYERDVRSFLEFCEL---KKVDL---RNVEASDLREYLAQRVE 63

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           Q ++   S++R L+ I+ F+K+ ++ K   E N  +   LK+    PR L     +  V+
Sbjct: 64  QDQLSSSSMQRHLTSIRQFMKWAEQGKYL-EINPTDDFKLKRQ---PRPLPGMIDIETVN 119

Query: 140 NVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            +L     E K ID     R+ A+L LLY  GLR++E   LT ++I  ++  +RI GKG+
Sbjct: 120 QILDQPMPE-KPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGN 178

Query: 196 KIRIVPLLPSVRKAILEY---YDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           K RIVP     ++++L +   Y++    FD N ++    F   RG  L P   ++ ++  
Sbjct: 179 KTRIVPFGKKAKESLLNWLKIYNIWKGHFDQNASV----FISQRGGALTPRQIEKRVKLQ 234

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  G+ +    H LRH FA+H+LS+ GDLRS+Q +LGH  LSTTQIYT+++     D +
Sbjct: 235 AQRAGVNVDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHL 290

Query: 311 MEIYDQTHPSITQ 323
            ++YDQ HP  T+
Sbjct: 291 AQVYDQAHPRATK 303


>gi|116873397|ref|YP_850178.1| integrase/recombinase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742275|emb|CAK21399.1| integrase/recombinase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 297

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 166/309 (53%), Gaps = 27/309 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  L +E+GLS  T+++Y+ D R F+ ++   T + +T   I  L  ++I  F++  
Sbjct: 6   EDFLHFLIVEKGLSANTIKAYQRDLRYFVSYME--TSKNLTDPNI--LERSDIVGFMAFA 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R +    RS+ R ++ ++SF  YL      +   ++ +   K++ SLP+ LN       +
Sbjct: 62  RQEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQSLPKVLN-------L 114

Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           D+V  LL +S  +  +  R+ A++ +LY  GLR++E + L   ++      ++  GKGDK
Sbjct: 115 DDVEKLLSSSDISTPLGLRDQAMMEILYATGLRVTELVRLKMDDLHLHMGFIQTIGKGDK 174

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI------RGKPLNPGVFQRYIRQL 250
            RI+PL  +    + +Y +    +    ++ P +R         G+ L    F + ++ +
Sbjct: 175 ERIIPLGKTATTVLEQYLE----EARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGI 230

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  G+    T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT+V        +
Sbjct: 231 AKESGIEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLR----L 286

Query: 311 MEIYDQTHP 319
            ++Y Q HP
Sbjct: 287 KDVYKQFHP 295


>gi|194333561|ref|YP_002015421.1| tyrosine recombinase XerD [Prosthecochloris aestuarii DSM 271]
 gi|194311379|gb|ACF45774.1| tyrosine recombinase XerD [Prosthecochloris aestuarii DSM 271]
          Length = 304

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 98/315 (31%), Positives = 156/315 (49%), Gaps = 21/315 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           + F  +    ++L  L +ER  S  T QSY  D  ++L+++    +++  +++I+     
Sbjct: 4   LEFPYIDHLDSFLNYLTLERNFSVNTRQSYTNDLSRYLLYM---QQQQKAVESIK---LD 57

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +IR FI       +  RS+ R++S I+S  K+L   KI   +   N+R  K   +LP+ L
Sbjct: 58  DIREFIHTLSATGMEARSIARNISAIRSLHKFLVAEKIVQVNETNNLRQPKPLKALPKVL 117

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              +A  L+D  L   S     +  R+ AIL  LY  G+R+SE + +   N   D+  +R
Sbjct: 118 THDEAFKLLDAPLAKDSSSRYAL--RDKAILEFLYATGVRVSELVDVCQNNCFLDEGFIR 175

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQ 244
           I GKG K R+VP+  S    I  Y D    +L + I        LF   RG  L      
Sbjct: 176 IFGKGSKERLVPIGSSAVSWIKRYLD----ELRMRIANDRSADFLFLNARGGRLTRMTVY 231

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +       G+  + + HTLRH+FATHLL  G DLR++Q +LGH  +  TQIYT+++  
Sbjct: 232 NIVTHYSLIAGISKTISPHTLRHTFATHLLEGGADLRAVQEMLGHSSILATQIYTHIDRS 291

Query: 305 NGGDWMMEIYDQTHP 319
               ++ E++   HP
Sbjct: 292 ----FLCEVHKSFHP 302


>gi|257422531|ref|ZP_05599521.1| recombinase [Enterococcus faecalis X98]
 gi|257164355|gb|EEU94315.1| recombinase [Enterococcus faecalis X98]
 gi|315155672|gb|EFT99688.1| tyrosine recombinase XerC [Enterococcus faecalis TX0043]
          Length = 299

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 161/322 (50%), Gaps = 28/322 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ME  N PE+ +  L+           +ERG S+ T ++Y+ D + F  FL   T      
Sbjct: 1   MEEKNWPELFARYLI-----------VERGYSEKTKKAYQEDIQHFFSFLK--TSGNDNY 47

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            T+  L   ++RA++S+   Q+    S+ R ++ ++SF ++L K +   E+    +   K
Sbjct: 48  LTVEHL---DVRAYLSELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKK 104

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K   LPR   EK+      + L  ++   + +D RN A+L +LYG G+R+SE  +LT   
Sbjct: 105 KQLRLPRFFYEKEM-----DALFESAQGEQPLDLRNKALLEVLYGTGIRVSECANLTVDA 159

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKP 237
           +    S L + GKG+K R VP     + A+ +Y +     L    Q     +F    G+ 
Sbjct: 160 VDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQ 219

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           + P   +  + QL +   L      H LRH+FATHLL+NG D+R++Q +LGH  LSTTQI
Sbjct: 220 ITPTGIEYVLNQLIKKSSLNAEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQI 279

Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319
           Y +V  ++    + + Y   HP
Sbjct: 280 YAHVTKES----LQKNYRTFHP 297


>gi|323140540|ref|ZP_08075467.1| tyrosine recombinase XerC [Phascolarctobacterium sp. YIT 12067]
 gi|322414992|gb|EFY05784.1| tyrosine recombinase XerC [Phascolarctobacterium sp. YIT 12067]
          Length = 302

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 165/319 (51%), Gaps = 27/319 (8%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           NN PE            +L  LE+E+  S+ T++SY+ D   F  F+    ++    Q  
Sbjct: 6   NNYPE-----------RFLTYLEVEKNCSQHTIESYQKDLAAFAEFMLRRNKQNFFWQ-- 52

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
            Q    ++R ++++   ++   R++ R +S ++SF KYL +  +   S +  +R  K   
Sbjct: 53  -QTGPLDVRGYLAELNEKQYARRTIARRISALRSFFKYLVREAVIEYSPLTKVRTPKLEK 111

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            LP  L+E +      N LL    ++K +  R+ A+L +LY  G R+SE + LT + +  
Sbjct: 112 KLPAFLDEIEI-----NELLAMPDKSKVLGVRDQAVLEMLYATGCRVSELVGLTLERVDL 166

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNP 240
               + + GKG+K R++P+  +   A+  YY +    L L  Q     +F   RG  L  
Sbjct: 167 SNRFVLLLGKGNKERVMPVGHTCCAALSTYYRVRQ-QLMLQYQQKHDFIFVNNRGGRLTD 225

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              +R + +    L +  + + HT+RHSFATHLL +G DLRS+Q +LGH  LSTTQIYT+
Sbjct: 226 RSVRRILEKYINMLAIHKNVSPHTIRHSFATHLLEHGADLRSVQELLGHANLSTTQIYTH 285

Query: 301 VNSKNGGDWMMEIYDQTHP 319
           V++++    +  +Y + HP
Sbjct: 286 VSNEH----VTNVYKKNHP 300


>gi|307289187|ref|ZP_07569143.1| tyrosine recombinase XerC [Enterococcus faecalis TX0109]
 gi|306499896|gb|EFM69257.1| tyrosine recombinase XerC [Enterococcus faecalis TX0109]
 gi|315164096|gb|EFU08113.1| tyrosine recombinase XerC [Enterococcus faecalis TX1302]
          Length = 299

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 161/322 (50%), Gaps = 28/322 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ME  N PE+ +  L+           +ERG S+ T ++Y+ D + F  FL   T      
Sbjct: 1   MEEKNWPELFARYLI-----------VERGYSEKTKKAYQEDIQHFFSFLK--TSGSDNY 47

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            T+  L   ++RA++S+   Q+    S+ R ++ ++SF ++L K +   E+    +   K
Sbjct: 48  LTVEHL---DVRAYLSELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKK 104

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K   LPR   EK+      + L  ++   + +D RN A+L +LYG G+R+SE  +LT   
Sbjct: 105 KQLRLPRFFYEKEM-----DALFESAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDA 159

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKP 237
           +    S L + GKG+K R VP     + A+ +Y +     L    Q     +F    G+ 
Sbjct: 160 VDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQ 219

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           + P   +  + QL +   L      H LRH+FATHLL+NG D+R++Q +LGH  LSTTQI
Sbjct: 220 ITPTGIEYVLNQLIKKSSLNAEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQI 279

Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319
           Y +V  ++    + + Y   HP
Sbjct: 280 YAHVTKES----LQKNYRTFHP 297


>gi|29376202|ref|NP_815356.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|227518833|ref|ZP_03948882.1| site-specific recombinase XerD [Enterococcus faecalis TX0104]
 gi|227553450|ref|ZP_03983499.1| site-specific recombinase XerD [Enterococcus faecalis HH22]
 gi|229549931|ref|ZP_04438656.1| site-specific recombinase XerD [Enterococcus faecalis ATCC 29200]
 gi|255972714|ref|ZP_05423300.1| phage integrase [Enterococcus faecalis T1]
 gi|256619143|ref|ZP_05475989.1| integrase [Enterococcus faecalis ATCC 4200]
 gi|256762579|ref|ZP_05503159.1| phage integrase [Enterococcus faecalis T3]
 gi|256853205|ref|ZP_05558575.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|256961848|ref|ZP_05566019.1| phage integrase [Enterococcus faecalis Merz96]
 gi|257082471|ref|ZP_05576832.1| phage integrase [Enterococcus faecalis E1Sol]
 gi|257086664|ref|ZP_05581025.1| phage integrase [Enterococcus faecalis D6]
 gi|257416173|ref|ZP_05593167.1| integrase [Enterococcus faecalis AR01/DG]
 gi|257419375|ref|ZP_05596369.1| phage integrase [Enterococcus faecalis T11]
 gi|293382913|ref|ZP_06628831.1| tyrosine recombinase XerC [Enterococcus faecalis R712]
 gi|293389598|ref|ZP_06634055.1| tyrosine recombinase XerC [Enterococcus faecalis S613]
 gi|300860343|ref|ZP_07106430.1| tyrosine recombinase XerC [Enterococcus faecalis TUSoD Ef11]
 gi|307274878|ref|ZP_07556041.1| tyrosine recombinase XerC [Enterococcus faecalis TX2134]
 gi|307291916|ref|ZP_07571785.1| tyrosine recombinase XerC [Enterococcus faecalis TX0411]
 gi|312907617|ref|ZP_07766608.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 512]
 gi|312910234|ref|ZP_07769081.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 516]
 gi|29343665|gb|AAO81426.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
 gi|227073746|gb|EEI11709.1| site-specific recombinase XerD [Enterococcus faecalis TX0104]
 gi|227177426|gb|EEI58398.1| site-specific recombinase XerD [Enterococcus faecalis HH22]
 gi|229304944|gb|EEN70940.1| site-specific recombinase XerD [Enterococcus faecalis ATCC 29200]
 gi|255963732|gb|EET96208.1| phage integrase [Enterococcus faecalis T1]
 gi|256598670|gb|EEU17846.1| integrase [Enterococcus faecalis ATCC 4200]
 gi|256683830|gb|EEU23525.1| phage integrase [Enterococcus faecalis T3]
 gi|256711664|gb|EEU26702.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|256952344|gb|EEU68976.1| phage integrase [Enterococcus faecalis Merz96]
 gi|256990501|gb|EEU77803.1| phage integrase [Enterococcus faecalis E1Sol]
 gi|256994694|gb|EEU81996.1| phage integrase [Enterococcus faecalis D6]
 gi|257158001|gb|EEU87961.1| integrase [Enterococcus faecalis ARO1/DG]
 gi|257161203|gb|EEU91163.1| phage integrase [Enterococcus faecalis T11]
 gi|291079578|gb|EFE16942.1| tyrosine recombinase XerC [Enterococcus faecalis R712]
 gi|291081215|gb|EFE18178.1| tyrosine recombinase XerC [Enterococcus faecalis S613]
 gi|295113045|emb|CBL31682.1| tyrosine recombinase XerC subunit [Enterococcus sp. 7L76]
 gi|300849382|gb|EFK77132.1| tyrosine recombinase XerC [Enterococcus faecalis TUSoD Ef11]
 gi|306496914|gb|EFM66462.1| tyrosine recombinase XerC [Enterococcus faecalis TX0411]
 gi|306508326|gb|EFM77433.1| tyrosine recombinase XerC [Enterococcus faecalis TX2134]
 gi|310626645|gb|EFQ09928.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 512]
 gi|311289507|gb|EFQ68063.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 516]
 gi|315027186|gb|EFT39118.1| tyrosine recombinase XerC [Enterococcus faecalis TX2137]
 gi|315029303|gb|EFT41235.1| tyrosine recombinase XerC [Enterococcus faecalis TX4000]
 gi|315034051|gb|EFT45983.1| tyrosine recombinase XerC [Enterococcus faecalis TX0017]
 gi|315145127|gb|EFT89143.1| tyrosine recombinase XerC [Enterococcus faecalis TX2141]
 gi|315147344|gb|EFT91360.1| tyrosine recombinase XerC [Enterococcus faecalis TX4244]
 gi|315150456|gb|EFT94472.1| tyrosine recombinase XerC [Enterococcus faecalis TX0012]
 gi|315158157|gb|EFU02174.1| tyrosine recombinase XerC [Enterococcus faecalis TX0312]
 gi|315160539|gb|EFU04556.1| tyrosine recombinase XerC [Enterococcus faecalis TX0645]
 gi|315169812|gb|EFU13829.1| tyrosine recombinase XerC [Enterococcus faecalis TX1342]
 gi|315172224|gb|EFU16241.1| tyrosine recombinase XerC [Enterococcus faecalis TX1346]
 gi|315575784|gb|EFU87975.1| tyrosine recombinase XerC [Enterococcus faecalis TX0309B]
 gi|315580436|gb|EFU92627.1| tyrosine recombinase XerC [Enterococcus faecalis TX0309A]
 gi|323480809|gb|ADX80248.1| tyrosine recombinase XerC [Enterococcus faecalis 62]
 gi|327535213|gb|AEA94047.1| tyrosine recombinase XerC [Enterococcus faecalis OG1RF]
          Length = 299

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 161/322 (50%), Gaps = 28/322 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ME  N PE+ +  L+           +ERG S+ T ++Y+ D + F  FL   T      
Sbjct: 1   MEEKNWPELFARYLI-----------VERGYSEKTKKAYQEDIQHFFSFLK--TSGNDNY 47

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            T+  L   ++RA++S+   Q+    S+ R ++ ++SF ++L K +   E+    +   K
Sbjct: 48  LTVEHL---DVRAYLSELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKK 104

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K   LPR   EK+      + L  ++   + +D RN A+L +LYG G+R+SE  +LT   
Sbjct: 105 KQLRLPRFFYEKEM-----DALFESAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDA 159

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKP 237
           +    S L + GKG+K R VP     + A+ +Y +     L    Q     +F    G+ 
Sbjct: 160 VDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQ 219

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           + P   +  + QL +   L      H LRH+FATHLL+NG D+R++Q +LGH  LSTTQI
Sbjct: 220 ITPTGIEYVLNQLIKKSSLNAEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQI 279

Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319
           Y +V  ++    + + Y   HP
Sbjct: 280 YAHVTKES----LQKNYRTFHP 297


>gi|325571148|ref|ZP_08146720.1| integrase/recombinase XerD [Enterococcus casseliflavus ATCC 12755]
 gi|325156233|gb|EGC68419.1| integrase/recombinase XerD [Enterococcus casseliflavus ATCC 12755]
          Length = 296

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 101/305 (33%), Positives = 159/305 (52%), Gaps = 22/305 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L IERGLS+ T  SY+ D +Q+L FL     +K  +   +Q+    + +F+   +
Sbjct: 7   DYLHYLTIERGLSQNTRASYQRDLQQYLAFL-----QKKQVTQWQQIDRVIVLSFLQSLQ 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  ++ R +S ++ F ++L++ + T    + ++ + KK   LP  L+ ++   L++
Sbjct: 62  EAGKSSATVIRMVSSLRRFHQFLRQERFTDHDPMQHIDSPKKQQKLPDTLSLQEVERLIE 121

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                T      +  R+ AIL ++Y  GLR+SE + L   ++      L+  GKGDK RI
Sbjct: 122 -----TPDTRAVLGIRDRAILEVMYATGLRVSELIGLKLNDLHLSMGLLQTTGKGDKERI 176

Query: 200 VPLLPSVRKAILEYY-DLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYL 254
           VPL     + I  Y  D  P+   L  + P    LF    G  L+     + ++ L R  
Sbjct: 177 VPLGDLAIQWIETYLSDARPY---LTRKTPDESHLFVNNHGTQLSRQGIWKNLKALVRQA 233

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+  + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT++  K     M E+Y
Sbjct: 234 GITKNVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR----MTEVY 289

Query: 315 DQTHP 319
            Q  P
Sbjct: 290 KQHFP 294


>gi|315655029|ref|ZP_07907933.1| integrase/recombinase XerD [Mobiluncus curtisii ATCC 51333]
 gi|315490685|gb|EFU80306.1| integrase/recombinase XerD [Mobiluncus curtisii ATCC 51333]
          Length = 323

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 103/330 (31%), Positives = 162/330 (49%), Gaps = 20/330 (6%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY-TEEKIT 59
           M  NN   + + E+  +   WL    + RGLS  T+++Y  D R+ + FL    + +  T
Sbjct: 1   MSENNPAAVFAEEITADFGQWL---SVNRGLSPQTVRAYLTDLRELMTFLVDSDSGDGPT 57

Query: 60  IQTIRQ--LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
            Q +R    +   IRA++       +   +L R ++  ++F  + + R I       N+R
Sbjct: 58  AQQLRVDLANPARIRAWLGAMSRAGMSRATLARRVASFRTFSSWAQVRDIVPGDAGQNLR 117

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW----IDARNSAILYLLYGCGLRISEA 173
            ++  N+LP  L+   A  L++   +    E       +  R+ A L LLY  G+R+SE 
Sbjct: 118 AMRPDNALPTVLSATDAAHLLETARVAAYPEASTAPNPVKLRDWAALELLYATGIRVSEL 177

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----L 229
             L   NI   Q T+R+ GKGDK R+VP       A+ EY +     L +N + P    +
Sbjct: 178 TGLELGNINKSQRTIRVTGKGDKQRVVPYGIPAGLALEEYLEKGRPAL-VNPEKPALNRV 236

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F G +G  L+  + +  + +L    G+P     H LRH+ ATHLL  G DLRS+Q ILGH
Sbjct: 237 FLGAKGGMLDTRIVRGMLHRLTAQAGVP-DLGPHGLRHTAATHLLDGGADLRSVQEILGH 295

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
             L+TTQ YT+++     D +  +Y Q HP
Sbjct: 296 ASLATTQRYTHLSM----DKLRAVYLQAHP 321


>gi|225874532|ref|YP_002755991.1| putative tyrosine recombinase XerD [Acidobacterium capsulatum ATCC
           51196]
 gi|225794156|gb|ACO34246.1| putative tyrosine recombinase XerD [Acidobacterium capsulatum ATCC
           51196]
          Length = 302

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 102/311 (32%), Positives = 157/311 (50%), Gaps = 25/311 (8%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +LL++ Q++L+   +E+GL  L+ Q+Y+ D    L+  A Y E   T   +       + 
Sbjct: 8   DLLRDYQSYLR---VEKGLRPLSCQAYQSD----LLLFAEYLESMNT--ALLDARSEHVA 58

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F+    T  +  RS+ R LS ++ F K+L   K       +NM +      LP++L ++
Sbjct: 59  GFLEHLNTHGVVSRSVARKLSCLRGFYKWLILDKRIHRDPTINMDSPSAWKILPKSLAQE 118

Query: 133 QALTLVDNVLLHTSH-ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
               ++D   L   H E   I  RN AIL LLY  GLR+SE   L   ++  D   + ++
Sbjct: 119 DMTAMLDRARLLAEHPEADGIALRNYAILELLYAGGLRVSELTGLRVADLSLDAGRVLVR 178

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIRGKPLNPGVFQRYIR 248
           GKGDK R+VPL      A+ +Y D    +L       Q  LF   RGKPL     + Y+ 
Sbjct: 179 GKGDKERLVPLGQPAVAALRQYLDRGRAELARKARGAQGALFLSARGKPLT----REYVW 234

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L R  G     + H LRHS ATH++ +G DLR++Q+ LGH  ++TTQ+YT+V   +   
Sbjct: 235 KLVRQYG----ASPHMLRHSAATHMVEHGADLRTVQTFLGHADIATTQVYTHVALGH--- 287

Query: 309 WMMEIYDQTHP 319
            +  +  Q HP
Sbjct: 288 -LKAVVRQHHP 297


>gi|255534331|ref|YP_003094702.1| Integrase [Flavobacteriaceae bacterium 3519-10]
 gi|255340527|gb|ACU06640.1| Integrase [Flavobacteriaceae bacterium 3519-10]
          Length = 302

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 97/297 (32%), Positives = 152/297 (51%), Gaps = 15/297 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L+ ER  S  TL +Y  D R+    L+ Y E  +      ++SY  I+ ++ +   QK  
Sbjct: 15  LKYERNFSDNTLDAYLRDIRK----LSDYAEFHLDGTGPLEISYENIQEYLFQLSKQKFS 70

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           +RS  R +S IK+F KYL + +   ++    + + K    LP  L+ +    ++  + + 
Sbjct: 71  ERSQARWISSIKAFFKYLAEDEAREDNPTTLLESPKLGLYLPDTLSFEDVERIIKAINIS 130

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           T      +  RN  ++ +LYGCGLR+SE + L   NI   +  L++ GKGDK R VPL  
Sbjct: 131 TD-----LGRRNQCMIEVLYGCGLRVSELIDLKISNINFKELYLKVDGKGDKSRFVPLAT 185

Query: 205 SVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
              K I EY       + +N   +  LF   RG  ++  +    I++L    G+    + 
Sbjct: 186 YTAKLIKEYIQEIRSKYKINKKCEDVLFLNSRGSAMSRVIVFIIIKELTEKAGINKKISP 245

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HT RHSFATHLL NG DLR IQ +LGH  ++TT+IYT++ ++   D ++      HP
Sbjct: 246 HTFRHSFATHLLQNGADLRYIQEMLGHSSITTTEIYTHLKNEELRDVILNF----HP 298


>gi|327440847|dbj|BAK17212.1| site-specific recombinase XerD [Solibacillus silvestris StLB046]
          Length = 300

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 101/304 (33%), Positives = 161/304 (52%), Gaps = 17/304 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  +++ER LS  TLQSY+ D    L+  A +   +  I     +    I  ++   
Sbjct: 9   EDYLHFIKVERQLSDNTLQSYKRD----LVAYARHIHYEQQIMEFDNVMREHILLYLDSL 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R+     +++ R +S I+SF ++L + K+T +   +++   KK  SLP+ L+ ++    +
Sbjct: 65  RSVGKSSKTISRQISSIRSFHQFLLREKVTNQDPTVHLEMPKKELSLPKVLSIEE----I 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D +L   S E K    R+ AIL ++YG G+RISE + L  +++      +R+ GKG K R
Sbjct: 121 DALLTAPSVE-KPQGTRDIAILEMMYGSGMRISELIDLNLEDVHLTMGFVRVFGKGGKER 179

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           I+PL  S  +A + Y +     L L   L     F   RGK        + I++     G
Sbjct: 180 IIPLGRSAIQACINYLEQARPQL-LGDALKNDAFFITQRGKRFTRQGCWKIIKEHAATAG 238

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T H LRHSFATHL+ NG DLR++Q +LGH  +STTQIYT+V+       + E+Y 
Sbjct: 239 ISKEITPHVLRHSFATHLIENGADLRAVQELLGHADISTTQIYTHVSKTR----LSEVYK 294

Query: 316 QTHP 319
           Q HP
Sbjct: 295 QFHP 298


>gi|116618399|ref|YP_818770.1| tyrosine recombinase XerD subunit [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097246|gb|ABJ62397.1| tyrosine recombinase XerD subunit [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 297

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 95/301 (31%), Positives = 164/301 (54%), Gaps = 16/301 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  + IERGLS+ T++SY  D  QF  +L     EK+ +    Q+ +  I ++++K R
Sbjct: 10  DYLHYIRIERGLSENTIKSYHQDLVQFGEYL---NGEKLVLD---QVDHIVILSWLNKLR 63

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                + S+ R ++ +++F  YL + K+   + + ++R  KK+  LP  L+ ++      
Sbjct: 64  DLGKSNSSVIRMVTTLRNFFGYLVREKVVAHNPMNDVRPPKKAEHLPAVLSIEEI----- 118

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           + LL    E   +  RN  +L ++Y  GLR+SE ++L   ++      ++  GKGDK RI
Sbjct: 119 DRLLQAPIEDTPLGLRNRTLLEVMYATGLRVSELVNLKMSDLHLQLGLIQTLGKGDKERI 178

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +P+       +  Y++     L  + + P +F   RG  ++     + I++L    G+  
Sbjct: 179 IPIGEIAIDWLTRYFNESRIVLLKDKESPYVFLNDRGNQISRQGIWKIIKKLVTTAGITK 238

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HTLRHSFATH+L NG DLR +Q +LGH  +STTQIYT+++ K     + E+YD+ H
Sbjct: 239 DVSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKR----LSEVYDEYH 294

Query: 319 P 319
           P
Sbjct: 295 P 295


>gi|89099048|ref|ZP_01171927.1| tyrosine recombinase [Bacillus sp. NRRL B-14911]
 gi|89086178|gb|EAR65300.1| tyrosine recombinase [Bacillus sp. NRRL B-14911]
          Length = 297

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 161/303 (53%), Gaps = 15/303 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  L IE+GL+  T+ SYE D + +L F+     +   + ++ ++    I  F+ K 
Sbjct: 6   KDFVHFLLIEKGLANNTIVSYERDLKNYLKFIV----KSEGLASLNEVQRVHIVQFLKKL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + Q    ++L R ++ I++F ++L + K+      +++ + ++  SLP+ L+  +  TL 
Sbjct: 62  KEQGKSAKTLARHIASIRAFHQFLLREKVCENDPSVHIESPQQERSLPKVLSMAEVETL- 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
               L +  ++     R+ A+L LLY  G+R+SE + L   ++      +R  GKG+K R
Sbjct: 121 ----LESPSDSSHYSLRDKAMLELLYATGIRVSELIGLQIGDVHLTMGFVRCIGKGNKER 176

Query: 199 IVPLLPSVRKAILEY--YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           I+P+  +  +AI  Y  +    F         LF    G+ L    F + +++L    G+
Sbjct: 177 IIPIGKTASEAIERYLLHGRPNFVSKSRRDDTLFLNHHGRQLTRQGFWKILKKLAGDAGI 236

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        + ++Y +
Sbjct: 237 EKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----LKDVYSK 292

Query: 317 THP 319
            HP
Sbjct: 293 FHP 295


>gi|15838084|ref|NP_298772.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa 9a5c]
 gi|34223079|sp|Q9PD96|XERC_XYLFA RecName: Full=Tyrosine recombinase xerC
 gi|9106507|gb|AAF84292.1|AE003977_15 site-specific recombinase [Xylella fastidiosa 9a5c]
          Length = 294

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 155/307 (50%), Gaps = 19/307 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++   L +ERG+S  TL +Y    R     +A+  ++   +  +  L   +++AF++   
Sbjct: 7   DFFAFLHVERGMSAHTLDAYR---RDIGALIAWGVQQ--AVGEVVALDRAQLQAFVAAEH 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +  +SL+R LS  + F  +L KR     +    +R  K    LPR L+  +A++ V 
Sbjct: 62  RRGLSAKSLQRRLSACRGFYAWLVKRGHIAINPAAGLRAPKALRKLPRILDADEAVSFV- 120

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                   +T  +  R+ A+L L Y  GLR+SE   L    +  D   + + GKG + R+
Sbjct: 121 ----QIPTDTP-LGLRDRALLELFYSSGLRLSELCGLRWGGVDLDAGLVSVLGKGSRQRV 175

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VP+      A+ E+   C        Q P+F G  G P++    Q  I+QL +  G+   
Sbjct: 176 VPVGSYALSALREW---CASSGG-GAQQPVFPGRYGGPISARAVQVRIKQLAQRQGMAKH 231

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRHSFA+HLL + GDLR +Q +LGH  ++TTQIYT+++ +    ++ ++YD  HP
Sbjct: 232 VHPHMLRHSFASHLLESSGDLRGVQELLGHADITTTQIYTHLDFQ----YLSKVYDAAHP 287

Query: 320 SITQKDK 326
              +K +
Sbjct: 288 RARRKAR 294


>gi|299536758|ref|ZP_07050066.1| tyrosine recombinase xerC [Lysinibacillus fusiformis ZC1]
 gi|298727770|gb|EFI68337.1| tyrosine recombinase xerC [Lysinibacillus fusiformis ZC1]
          Length = 299

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 95/302 (31%), Positives = 157/302 (51%), Gaps = 15/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + ++  +++E+  S  T++ YE D   FL FL   TE    I  +  + Y   R +++K 
Sbjct: 10  EQFMLYIQVEKNFSVHTVREYESDLLDFLTFLQ--TE---GIDDLASVEYIHARLYVTKL 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +K    S+ R +S I+SF ++L ++    +    ++ + KK + LP    E++   L 
Sbjct: 65  YDEKRARASISRKISSIRSFFRFLNRQYGLDDGAFRSLYHPKKESRLPNFFYEEELKQLF 124

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D    +T  + K +  RN AIL LLY  G+R+SE  S+  +++    S +R+ GKG K R
Sbjct: 125 DA---NTGDDLKSL--RNIAILELLYATGIRVSELTSIQVEDVDFHYSIIRVMGKGRKER 179

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           I+P       A+ +Y +   P  +     L LF  +RG  L P   +  + ++     L 
Sbjct: 180 IIPFGQFASLAMQDYIEQARPRLMKKTNHLQLFVNMRGGELTPRGVRHILNEMIDKASLH 239

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRH+FATHLL+NG DLR++Q +LGH  LS+TQ+YT+V  ++    + + Y   
Sbjct: 240 TKIYPHMLRHTFATHLLNNGADLRTVQELLGHSHLSSTQVYTHVTKEH----LRQTYMNA 295

Query: 318 HP 319
           HP
Sbjct: 296 HP 297


>gi|323702534|ref|ZP_08114197.1| tyrosine recombinase XerD [Desulfotomaculum nigrificans DSM 574]
 gi|323532508|gb|EGB22384.1| tyrosine recombinase XerD [Desulfotomaculum nigrificans DSM 574]
          Length = 296

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 148/307 (48%), Gaps = 20/307 (6%)

Query: 19  QNWLQN----LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           + WLQ     L +ERGL++ TL SY  D  Q+L  L     +K  +  I Q +   +   
Sbjct: 2   ERWLQEFIHYLAVERGLAQNTLASYRIDLSQYLSHL-----KKQGVTAIDQANRNHVLTH 56

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + K +       ++ R L+ +K F ++L    + TE   +N+ + K    LP+ L   + 
Sbjct: 57  LYKLQKSGKAPATISRHLAALKHFYRFLLADGVVTEDPTVNLESPKLGQRLPQVLTTAEV 116

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+    L           R+ A+L L+Y  G+R+SE ++L  +++  D   +R  GKG
Sbjct: 117 EALLSQPQL-----ADPAGLRDKAMLELIYATGIRVSEMVTLDIEHVELDMGYIRCFGKG 171

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQLRR 252
            K RI+PL       + EY       L         LF   +GK L    F + +++  R
Sbjct: 172 SKERIIPLGAVAAHYVREYLARSRVKLTKGKTEHRALFVNAQGKRLTRQGFWKILKKYAR 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +    T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT++        + E
Sbjct: 232 EANINKHITPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHLTKIR----LRE 287

Query: 313 IYDQTHP 319
           +Y   HP
Sbjct: 288 VYTNAHP 294


>gi|16801135|ref|NP_471403.1| hypothetical protein lin2069 [Listeria innocua Clip11262]
 gi|34222947|sp|Q92A53|XERD_LISIN RecName: Full=Tyrosine recombinase xerD
 gi|16414570|emb|CAC97299.1| lin2069 [Listeria innocua Clip11262]
 gi|313618111|gb|EFR90213.1| tyrosine recombinase XerD [Listeria innocua FSL S4-378]
 gi|313623100|gb|EFR93374.1| tyrosine recombinase XerD [Listeria innocua FSL J1-023]
          Length = 297

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 160/308 (51%), Gaps = 27/308 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L +E+GLS  T+++YE D    L +   Y +   T+     L   +I  F++  R
Sbjct: 7   DFLHFLIVEKGLSANTIKAYERD----LHYFVSYMDTSRTLTDPDTLERNDIVGFMAFAR 62

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +    RS+ R ++ ++SF  YL      +   ++ +   K++ SLP+ LN       +D
Sbjct: 63  KEGKSPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQSLPKVLN-------LD 115

Query: 140 NV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +V  LL +S  +  +  R+ A+L +LY  GLR++E + L   ++      ++  GKGDK 
Sbjct: 116 DVEKLLSSSDTSTPLGLRDQAMLEILYATGLRVTELVKLKMDDLHLQMGFIQTIGKGDKE 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI------RGKPLNPGVFQRYIRQLR 251
           RI+PL  +    + +Y +    +    ++ P +R         G+ L    F + ++ + 
Sbjct: 176 RIIPLGKTATTVLEQYLE----EARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIA 231

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +  G+    T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT+V        + 
Sbjct: 232 KESGIEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLR----LK 287

Query: 312 EIYDQTHP 319
           ++Y Q HP
Sbjct: 288 DVYKQFHP 295


>gi|284048585|ref|YP_003398924.1| tyrosine recombinase XerC [Acidaminococcus fermentans DSM 20731]
 gi|283952806|gb|ADB47609.1| tyrosine recombinase XerC [Acidaminococcus fermentans DSM 20731]
          Length = 311

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 98/311 (31%), Positives = 159/311 (51%), Gaps = 25/311 (8%)

Query: 19  QNWLQN----LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR--QLSYTEIR 72
           + W ++    LE+E+  S LT+++Y  D R F  F+A  TE+       R  Q++  +IR
Sbjct: 14  EKWPEDFALYLEVEKDDSPLTIENYLADIRHFKEFMAQRTED------FRWPQVTVLDIR 67

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +++++   + +  R++ R +S ++SF +YL++      +    +R  K    LP  L E 
Sbjct: 68  SYLAQMHDRDLSRRTIARRISSLRSFYRYLRREGRVKTNPFTRVRTPKLEKKLPVFLEEF 127

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +      N+LL     T  +  R+ AIL  LY  G R+SE + LT   +        + G
Sbjct: 128 EI-----NLLLRMPDCTTVLGRRDRAILEFLYSTGCRVSELVGLTLTRVDLGNRYAILLG 182

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIR 248
           KG K R+VPL      A+ +Y       L    Q P    +F   RG+PL+    +R + 
Sbjct: 183 KGRKERLVPLGHPCVAAMEDYLRHSRGTLMEKYQAPRHQTVFVNSRGRPLSARSVRRILD 242

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +      L    + HT+RH+FATHLL +G DLR++Q +LGH  LSTTQIYT+V ++    
Sbjct: 243 KYVEMTALQKHVSPHTIRHTFATHLLDHGADLRAVQELLGHVSLSTTQIYTHVTAER--- 299

Query: 309 WMMEIYDQTHP 319
            +  +Y++ HP
Sbjct: 300 -LTAVYEKHHP 309


>gi|317486704|ref|ZP_07945521.1| phage integrase [Bilophila wadsworthia 3_1_6]
 gi|316922087|gb|EFV43356.1| phage integrase [Bilophila wadsworthia 3_1_6]
          Length = 339

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 102/323 (31%), Positives = 159/323 (49%), Gaps = 27/323 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            W+ +   ++G S  T+ +Y  D  QF  +L     E+ ++    +L     + + +   
Sbjct: 20  TWMTD---QKGFSPATISAYRTDLLQFEEWL---HREQHSLARPGELEKYHFQDYSAHLF 73

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +     S+ R LS ++S  +YL K K   ++    +RN K+    P ALN  Q  TL+D
Sbjct: 74  HEGQARSSIGRKLSALRSLFRYLMKMKKIDKNPAKLVRNPKRELRHPTALNVDQMFTLLD 133

Query: 140 NVLLHTSHETKWIDARNS----------------AILYLLYGCGLRISEALSLTPQNIMD 183
              + +        +R +                A+  LLYG GLRISEAL L   ++  
Sbjct: 134 EASVESGGAAGLDGSRQAEQTVTDREHAGHTRDLALAELLYGSGLRISEALDLDVDDVDP 193

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
               +R+ GKG K RI PL  +  +A+  +  +    +    +  LF G RGK LN    
Sbjct: 194 ASGFIRVIGKGSKERIAPLSDTSVRALFLWLRVRAL-IAPPAEKALFVGNRGKRLNRRQA 252

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            R + ++R+  GLP   + HTLRH+FATH+L NG D+RS+Q +LGH  LSTTQ YT++  
Sbjct: 253 ARILDEIRKSAGLPQHLSPHTLRHTFATHMLENGADMRSVQELLGHASLSTTQRYTHITL 312

Query: 304 KNGGDWMMEIYDQTHPSITQKDK 326
               D +M +YD+ HP  + + K
Sbjct: 313 ----DHLMRVYDKAHPRSSVRGK 331


>gi|229075797|ref|ZP_04208774.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-18]
 gi|229098560|ref|ZP_04229501.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-29]
 gi|229104696|ref|ZP_04235358.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-28]
 gi|229117586|ref|ZP_04246958.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-3]
 gi|228665906|gb|EEL21376.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-3]
 gi|228678760|gb|EEL32975.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-28]
 gi|228684882|gb|EEL38819.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-29]
 gi|228707349|gb|EEL59545.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-18]
          Length = 296

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 162/304 (53%), Gaps = 18/304 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  + +E+GL+K T+ SYE D + ++ +L    +    ++T  +++   I  F+   
Sbjct: 6   KDFIHYMIVEKGLAKNTVVSYERDLKSYVKYLQNVEQ----MKTFHEVTRLHIVNFLQYL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +      ++L R ++ I+SF ++L + +       +++   +    LP+ L+       +
Sbjct: 62  KENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLS-------I 114

Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           D V  LL T   T     R+ A+L LLY  GLR+SE ++L  +++      +R  GKG+K
Sbjct: 115 DEVEALLQTPKMTSAFGIRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNK 174

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            RI+PL     +AI +Y +    +L    +   LF    G  L+   F + +++L +   
Sbjct: 175 ERIIPLGSLATEAIQKYIEKGRRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEAN 234

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + ++Y 
Sbjct: 235 IEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKAR----LKDVYK 290

Query: 316 QTHP 319
           Q HP
Sbjct: 291 QFHP 294


>gi|311693653|gb|ADP96526.1| site-specific tyrosine recombinase XerD [marine bacterium HP15]
          Length = 300

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 97/294 (32%), Positives = 150/294 (51%), Gaps = 14/294 (4%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +E GL + T Q+Y  D    L+ L+ + E +     +R +  T++ A++S    Q +   
Sbjct: 18  LEDGLGEKTRQAYRSD----LLRLSEWLESQPGKPLLRDVRRTDLLAWMSSGLAQGVKSS 73

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           +  R LSG++ F ++L +  + TE   L + + +    LP +L E +      + LL   
Sbjct: 74  TAARRLSGLRRFYRFLLREGLITEDPTLRIDSPRLPRRLPDSLTEGEV-----DALLSEP 128

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                I+ R+ A+L +LYGCGLR+SE   L    +   Q  +RI GKGDK R+VPL    
Sbjct: 129 DPGIAIELRDKAMLEILYGCGLRVSELTELRVDQVNLRQGVVRITGKGDKERLVPLGEEA 188

Query: 207 RKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              +L+Y  +  P  L       LF G R   +    F   I+     +G+    + HTL
Sbjct: 189 VDWLLQYMKEGRPELLKGRSCDALFPGNRAAAMTRQTFWHRIKHYAVRVGIRKHLSPHTL 248

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           RH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++   HP
Sbjct: 249 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARQR----LQSLHQAHHP 298


>gi|224541324|ref|ZP_03681863.1| hypothetical protein CATMIT_00484 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525761|gb|EEF94866.1| hypothetical protein CATMIT_00484 [Catenibacterium mitsuokai DSM
           15897]
          Length = 310

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 103/310 (33%), Positives = 167/310 (53%), Gaps = 22/310 (7%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           + E++ +L  L+ ++  S LTLQSYE +   FL+F+    +E I++Q   ++ Y  I+ +
Sbjct: 1   MDEKKAFLHYLKYQKNYSVLTLQSYERELTDFLLFIG---KESISLQ---EVDYYVIQNY 54

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +     + +   ++   LS ++SF KYL ++     +    + +LK  +  P  L   + 
Sbjct: 55  LIYLNEKHLSHTTINHYLSSLRSFFKYLCQQNSVVSNPFSQVHSLKTGSRNPDFLYVDEM 114

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           +  +D++  HTS     +  RN A+L L+Y  GLR+SE +SL    I  ++  +R+ GKG
Sbjct: 115 MGYLDSIDTHTS-----LGVRNKALLELMYASGLRVSEVVSLRLSQIDFNRQMIRVLGKG 169

Query: 195 DKIRIVPLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQL 250
            K R VP     +K +L+Y +   +   +        +F   RGK L N GV     R +
Sbjct: 170 SKEREVPFHDYAKKWLLQYINDDRISIMNEYHEAHDYVFVNRRGKKLTNRGVENIIDRTM 229

Query: 251 RRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             YL  PL     HT+RHSFATHLL  G D+R +Q +LGH  LSTTQIYT+V+ ++    
Sbjct: 230 --YLYDPLRKIHPHTIRHSFATHLLDAGMDIRVVQELLGHSSLSTTQIYTHVSQEH---- 283

Query: 310 MMEIYDQTHP 319
           + E+Y++T P
Sbjct: 284 LREVYNRTCP 293


>gi|255975766|ref|ZP_05426352.1| phage integrase [Enterococcus faecalis T2]
 gi|307277985|ref|ZP_07559069.1| tyrosine recombinase XerC [Enterococcus faecalis TX0860]
 gi|312899495|ref|ZP_07758825.1| tyrosine recombinase XerC [Enterococcus faecalis TX0470]
 gi|255968638|gb|EET99260.1| phage integrase [Enterococcus faecalis T2]
 gi|306505382|gb|EFM74568.1| tyrosine recombinase XerC [Enterococcus faecalis TX0860]
 gi|311293365|gb|EFQ71921.1| tyrosine recombinase XerC [Enterococcus faecalis TX0470]
          Length = 299

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 160/322 (49%), Gaps = 28/322 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ME  N PE+ +  L+           +ERG S+ T ++Y+ D + F  FL   T      
Sbjct: 1   MEEKNWPELFARYLI-----------VERGYSEKTKKAYQEDIQHFFSFLK--TSGNDNY 47

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            T+  L   ++RA++S+   Q+    S+ R ++ ++SF ++L K +   E+    +   K
Sbjct: 48  LTVEHL---DVRAYLSELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKK 104

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K   LPR   EK+      + L  ++     +D RN A+L +LYG G+R+SE  +LT   
Sbjct: 105 KQLRLPRFFYEKEM-----DALFESAQGEHPLDLRNQALLEVLYGTGIRVSECANLTVDA 159

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKP 237
           +    S L + GKG+K R VP     + A+ +Y +     L    Q     +F    G+ 
Sbjct: 160 VDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQ 219

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           + P   +  + QL +   L      H LRH+FATHLL+NG D+R++Q +LGH  LSTTQI
Sbjct: 220 ITPTGIEYVLNQLIKKSSLNAEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQI 279

Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319
           Y +V  ++    + + Y   HP
Sbjct: 280 YAHVTKES----LQKNYRTFHP 297


>gi|320355009|ref|YP_004196348.1| tyrosine recombinase XerD [Desulfobulbus propionicus DSM 2032]
 gi|320123511|gb|ADW19057.1| tyrosine recombinase XerD [Desulfobulbus propionicus DSM 2032]
          Length = 306

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 102/303 (33%), Positives = 161/303 (53%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +LQ+L ++R L++ T+ +Y+ D   F  F  F   + I I+ I +    +   +  +R
Sbjct: 17  QLFLQHLTLQRRLARNTVAAYQADLEFFFRF--FSDADAILIERIDKEHVQQFFQYCHQR 74

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R   IG RS  R L+ +++F ++L+ R +   + +  +   K   SLP+ L     +  V
Sbjct: 75  R---IGARSNARRLAALRAFFRFLQDRGVLAGNPLAEIDAPKIGRSLPKVLT----IAEV 127

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D +L   S  T  +  RN A+L+LLY  GLR+SE ++L           LRI GKG+K R
Sbjct: 128 DALLRPPSPPTP-LAIRNHAMLHLLYASGLRVSELVNLPVNGCNLHTGHLRILGKGNKER 186

Query: 199 IVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           IVP   +V   IL  Y   + P  L       LF   RG+ +    F + +R++    G+
Sbjct: 187 IVPF-SAVAGTILRDYIERVRPLLLKGKGSPLLFCSNRGEAMTRHRFWQIVREIALIAGI 245

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + H LRHSFATHL++ G DLRS+Q +LGH  ++TTQIYT+V++    D +   + +
Sbjct: 246 RKAISPHVLRHSFATHLVAGGADLRSVQMMLGHSDIATTQIYTHVDA----DRLKSTHRR 301

Query: 317 THP 319
            HP
Sbjct: 302 FHP 304


>gi|184159192|ref|YP_001847531.1| site-specific recombinase XerC [Acinetobacter baumannii ACICU]
 gi|332876021|ref|ZP_08443807.1| putative tyrosine recombinase XerC [Acinetobacter baumannii
           6014059]
 gi|183210786|gb|ACC58184.1| Site-specific recombinase XerC [Acinetobacter baumannii ACICU]
 gi|332735887|gb|EGJ66928.1| putative tyrosine recombinase XerC [Acinetobacter baumannii
           6014059]
          Length = 308

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 174/310 (56%), Gaps = 24/310 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+  +I+   S+ T+ +YE D + FL F      +K+ +   R +  +++R ++++R  
Sbjct: 15  WLKERKIQNQ-SEHTITAYERDVKSFLEFCEL---KKVDL---RNVEASDLREYLAQRVE 67

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           Q ++   S++R L+ I+ F+K+ ++ K    +   + +  ++   LP  ++ +    ++D
Sbjct: 68  QDQLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILD 127

Query: 140 NVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             +     + + W+  R+ A+L LLY  GLR++E   LT ++I  ++  +RI GKG+K R
Sbjct: 128 QPMPEKPVDQQLWL--RDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTR 185

Query: 199 IVPLLPSVRKAILEY---YDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           IVP     ++++L +   Y++    FD N ++    F   RG  L P   ++ ++   + 
Sbjct: 186 IVPFGKKAKESLLNWLKIYNIWKGHFDQNASV----FISQRGGALTPRQIEKRVKLQAQR 241

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+ +    H LRH FA+H+LS+ GDLRS+Q +LGH  LSTTQIYT+++     D + ++
Sbjct: 242 AGVNVDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHLAQV 297

Query: 314 YDQTHPSITQ 323
           YDQ HP  T+
Sbjct: 298 YDQAHPRATK 307


>gi|77359472|ref|YP_339047.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874383|emb|CAI85604.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 308

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 93/301 (30%), Positives = 159/301 (52%), Gaps = 17/301 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +E+G+S+ TL +Y  D  +F  FL     +   + T+  L   ++ ++++ R
Sbjct: 23  ETFLDCLYLEQGVSENTLSAYRSDLDKFCQFL-----KGKNLMTVTGL---DVESYLAHR 74

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +  RS  RS+S +K F +Y  + K+ ++S +LN+   K   SLP+ L+E +     
Sbjct: 75  VDLGLKPRSTARSISALKRFYQYFVREKLISDSPMLNIAQPKAGQSLPKTLSEAEV---- 130

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL   +  + +  R+ A+L LLY  GLR+SE + L  + I   Q+ + ++GKG+K R
Sbjct: 131 -EALLSAPNTDEPMGLRDKAMLELLYATGLRVSELVGLRIEQINLRQAVVFVKGKGNKER 189

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VPL       + ++  +    +  +    +F   RG  +    F   ++       +  
Sbjct: 190 LVPLGEEAMYWLEQFLKVGRAQMIKHATDFVFPSKRGVGMTRQTFWHRVKHYAILASIES 249

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V      + +  ++ Q H
Sbjct: 250 SLSPHTLRHAFATHLLNHGADLRVVQMMLGHSDLSTTQIYTHV----ANERLKSVHAQHH 305

Query: 319 P 319
           P
Sbjct: 306 P 306


>gi|332287662|ref|YP_004422563.1| site-specific tyrosine recombinase xerD [Chlamydophila psittaci
           6BC]
 gi|325506468|gb|ADZ18106.1| site-specific tyrosine recombinase xerD [Chlamydophila psittaci
           6BC]
 gi|328914913|gb|AEB55746.1| integrase/recombinase XerD [Chlamydophila psittaci 6BC]
          Length = 299

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 104/303 (34%), Positives = 158/303 (52%), Gaps = 33/303 (10%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L ++RGLS  ++ +Y  D   FL   A        I +I ++S   +  F+ +   +K  
Sbjct: 18  LSVDRGLSCNSISAYIQDITLFLKINA--------ITSIAEISQDSVHLFVDQLHKRKEA 69

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           + +L R L  +K F ++LK+ K+     ++    + K   LP  L  K+  TL+   +  
Sbjct: 70  EATLARRLIALKVFFRFLKEAKLLEHPPLIEHPKIWKR--LPTVLTPKEVDTLL--AIPK 125

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            +  +  I  R++AIL+ LY  G+R+SE   L   ++ DD   LR+ GKG K R+VPL  
Sbjct: 126 KTTTSSMISTRDTAILHTLYSTGIRVSELCGLHIGDVSDD--FLRVTGKGSKTRLVPLGK 183

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLN-PGVFQR---YIRQLRRYLGL 256
              +AI  Y  LCPF  NL  + P    LF  IRG+ L    V++R   Y +Q+      
Sbjct: 184 LASEAIDAY--LCPFRENLQKKQPEEHHLFLSIRGRKLERSCVWKRIHYYAKQVTHKRVS 241

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           P     H+LRH+FATHLL N  DLR IQ +LGH R+++T++YT+V      D +ME +  
Sbjct: 242 P-----HSLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHV----AADTLMENFLS 292

Query: 317 THP 319
            HP
Sbjct: 293 YHP 295


>gi|258544388|ref|ZP_05704622.1| tyrosine recombinase XerD [Cardiobacterium hominis ATCC 15826]
 gi|258520347|gb|EEV89206.1| tyrosine recombinase XerD [Cardiobacterium hominis ATCC 15826]
          Length = 289

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 155/302 (51%), Gaps = 19/302 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + + + +E GL++ ++ SY  D R           E++  + +   S  +++A +++ 
Sbjct: 4   ERFCEAMWLEAGLAEASVASYRRDLR---------LAERLCAKPLSDFSAADVQAVLAQL 54

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
              +    SL R    ++ F  ++ + ++  +   + +  ++    LPR+L+E +   L+
Sbjct: 55  LDLQRKASSLARMRVSLRRFFAWMVEERLRADDPTVLLEAVRHEKPLPRSLSEAEVERLL 114

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
               L T         R++A+L LLY CGLR+SE + L    +   ++ LR++GKGDK+R
Sbjct: 115 AAPDLATP-----AGLRDAAMLELLYACGLRVSELVGLPLSAVFLQEAVLRVRGKGDKVR 169

Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+     + +  Y  +  P  L   +   LF   RG  +N   F + I      +G+ 
Sbjct: 170 LVPMGEQAAEMVERYCREARPLLLEGRVSDVLFIAARGGAMNRRTFWKLIHDYAIAVGIR 229

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + + HTLRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V        + +++   
Sbjct: 230 TAVSPHTLRHAFATHLVNHGADLRVVQMLLGHSNLSTTQIYTHVAEAR----LAKVFAAH 285

Query: 318 HP 319
           HP
Sbjct: 286 HP 287


>gi|330504633|ref|YP_004381502.1| site-specific tyrosine recombinase XerD [Pseudomonas mendocina
           NK-01]
 gi|328918919|gb|AEB59750.1| site-specific tyrosine recombinase XerD [Pseudomonas mendocina
           NK-01]
          Length = 313

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 99/302 (32%), Positives = 149/302 (49%), Gaps = 16/302 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+   +E+GLS  T  +Y  D   F    A+     + +Q I       I   ++ R
Sbjct: 25  ERFLEAQWLEKGLSAHTQAAYRSDLEHFN---AWLDARGLALQHI---GRDAILDHLAWR 78

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q    RS  R LSG++ F ++L +  + +E   L +   +    LP++L+E       
Sbjct: 79  LEQGYQARSTARFLSGVRGFYRFLLREMLISEDPTLQVELPQIGRPLPKSLSEADV---- 134

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL        I  R+ A+L +LY CGLR+SE + LT + +   Q  LR+ GKG K R
Sbjct: 135 -EALLQAPDLDDPIGLRDRAMLEVLYACGLRVSELVGLTLEQVNLRQGVLRVFGKGSKER 193

Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       I  Y  +  P  L       LF  +RG+ +    F   I+   R  G+ 
Sbjct: 194 LVPLGEEAIAWIERYMREARPLLLGGKPSDVLFPSLRGEQMTRQTFWHRIKHQARVAGIS 253

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT++        + E++ Q 
Sbjct: 254 KALSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARAR----LQELHAQH 309

Query: 318 HP 319
           HP
Sbjct: 310 HP 311


>gi|81428639|ref|YP_395639.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78610281|emb|CAI55330.1| Site-specific DNA tyrosine recombinase, XerD [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 294

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 102/306 (33%), Positives = 159/306 (51%), Gaps = 24/306 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR----AF 74
           Q++L  L+IERGLS+ T QSY  D +Q+  FL     +K+T       S+TE R     F
Sbjct: 6   QDYLHYLKIERGLSENTRQSYRQDLKQYQQFLV---SQKLT-------SFTEDRFIVLGF 55

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +  + T +    S+ RS+S ++ F +YL +     +  +L + + K+   LP  L+ ++ 
Sbjct: 56  LQAQTTAQKAQSSITRSISTLRKFYQYLAREGRIQKDPMLQIDSPKQGRHLPAVLSSEEI 115

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
                  LL T   +  +  R+ AIL +LY  GLR+SE + L   ++      ++  GKG
Sbjct: 116 -----ERLLKTPDTSTPLGLRDRAILEVLYATGLRVSELVHLKLTDLHLSLGLIQTLGKG 170

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRY 253
           DK RI+P+       I +Y +     L      P LF    G  L      + ++ + + 
Sbjct: 171 DKERIIPIGDVAVDWINQYLERSRNRLTKGKDSPYLFVNFHGNGLTRQGIWKNLKAIVQA 230

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    T HTLRHSFAT LL NG DLR +Q +LGH  +STTQIYT+++ K+    + E+
Sbjct: 231 AGIDKDVTPHTLRHSFATVLLENGADLRIVQELLGHSDISTTQIYTHISKKH----LTEV 286

Query: 314 YDQTHP 319
           Y ++HP
Sbjct: 287 YQRSHP 292


>gi|301063905|ref|ZP_07204380.1| tyrosine recombinase XerC [delta proteobacterium NaphS2]
 gi|300441980|gb|EFK06270.1| tyrosine recombinase XerC [delta proteobacterium NaphS2]
          Length = 329

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 99/318 (31%), Positives = 160/318 (50%), Gaps = 20/318 (6%)

Query: 12  FELLKER--QNWLQNLEIERGLSKLTLQSYECDTRQFLIF----LAFYTEEKITIQTIRQ 65
           F LL E   + +++ L  E+G SK T ++Y  D  QF  F    +A   +E     +I +
Sbjct: 19  FGLLLEEGIKRFIRYLHDEKGYSKHTQRNYRVDLEQFASFVAREMALPLKETDLDFSIEE 78

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +    IR F+      K+   ++ R LS ++SF  +L+K ++   +    +++ K    +
Sbjct: 79  IESKTIRKFVGSL-YGKLKRTTIARKLSAVRSFFLFLEKEELIKTNPAGELQSPKLEKYI 137

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P  L   +   L+D       +  + +  R+ AIL +LY CG+R++E   +   +I  DQ
Sbjct: 138 PSHLPVDEVFRLMD-----LPNRERSLGLRDLAILEVLYSCGIRVAELAGMNVSSIDHDQ 192

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI----QLPLFRGIRGKPLNPG 241
             +++ GKG+K R+VP+     KA+  Y      D           PL    RG  L   
Sbjct: 193 RLVKVTGKGNKERLVPIGRQALKAVKAYLAATDEDRRRAALRGEGEPLIMNFRGGRLTTR 252

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              R +++     GL    + H++RH+FATH+L  G DLRS+Q +LGH  LSTTQ YT+V
Sbjct: 253 SIGRIVKKYAGAGGLTEDISPHSMRHTFATHMLDGGADLRSVQELLGHKSLSTTQKYTHV 312

Query: 302 NSKNGGDWMMEIYDQTHP 319
           +     D +ME+YD+THP
Sbjct: 313 SL----DRLMEVYDKTHP 326


>gi|222053854|ref|YP_002536216.1| tyrosine recombinase XerC [Geobacter sp. FRC-32]
 gi|221563143|gb|ACM19115.1| tyrosine recombinase XerC [Geobacter sp. FRC-32]
          Length = 294

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 100/307 (32%), Positives = 155/307 (50%), Gaps = 21/307 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-- 77
            + + L IER +S  T+  Y  D      FL+F   EK+    +  +S+  IR +I+   
Sbjct: 7   QFCRYLAIERNVSPHTVAGYRSD---LTFFLSFLDREKVQAD-VGSISHLLIRRYIAGLY 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +  QK    S+ R L+ I++  KYL ++ + +++    +   KK   +P  L   +  TL
Sbjct: 63  KDHQK---SSIGRQLAAIRALFKYLLRQGLVSKNPAELVSTPKKEKKIPYHLTIDEVTTL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           V+        +   +  R+ AIL LLY CG+R+SE  +L    +  ++  +R+ GKG+K 
Sbjct: 120 VE-----APQQEDLLSLRDRAILELLYSCGIRVSELTALNVGEVEMNERLIRVCGKGNKE 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RIVP+    RKA+    D          + PL    RG  L      R + +    +   
Sbjct: 175 RIVPI---GRKALEALADYLSARNTPPEEAPLILNARGTRLTSRSVARIVDRYIVKIATM 231

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + HTLRH+FATH+L  G DLR+IQ +LGH  LSTTQ YT+V+     D +ME+YD+ 
Sbjct: 232 KKISPHTLRHTFATHMLEGGADLRAIQELLGHASLSTTQKYTHVSI----DRLMEVYDKA 287

Query: 318 HPSITQK 324
           HP   +K
Sbjct: 288 HPKARKK 294


>gi|85859268|ref|YP_461470.1| integrase/recombinase [Syntrophus aciditrophicus SB]
 gi|123725256|sp|Q2LT92|XERC_SYNAS RecName: Full=Tyrosine recombinase xerC
 gi|85722359|gb|ABC77302.1| integrase/recombinase [Syntrophus aciditrophicus SB]
          Length = 310

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 108/320 (33%), Positives = 161/320 (50%), Gaps = 31/320 (9%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA--FYTEEKITIQTIRQLSYTE 70
           EL+KE   ++   ++ER LS  T ++Y  D  QF I+L        ++  +  + + Y  
Sbjct: 3   ELIKEFDRYM---DLERNLSTHTRKNYLSDLNQFKIYLEENHRVPTELKTEAWQNVDYMM 59

Query: 71  IRAFIS---KRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLP 126
           +RAF+    +RR +K+   ++ R L+ +++F KYL +KRKI          N  ++ S P
Sbjct: 60  VRAFLGALYRRRVKKV---TIARKLASLRAFFKYLHQKRKIQC--------NPLEAVSTP 108

Query: 127 RALNEKQALTLVDN--VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           R      A+  VD   VLL+          R+ AIL L Y  G+R+SE   +  +++   
Sbjct: 109 RTEKYIPAVLSVDEIFVLLNLPFPEDVFGLRDRAILELFYSSGIRVSELTGINEEDMDFS 168

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-----LNIQLPLFRGIRGKPLN 239
           Q  +RI+GKG K RIVP+     +A+  Y    P             +PLF   R   L+
Sbjct: 169 QGLIRIRGKGKKERIVPIGQPASEAVQRYMMKKPGSETSGKAVATCPVPLFVNRRQGRLS 228

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                R + +     GL    + HTLRHSFATHL+  G DLRSIQ +LGH  LSTTQ YT
Sbjct: 229 ARSVARILSKYVSMSGLQKQISPHTLRHSFATHLMDAGADLRSIQELLGHESLSTTQKYT 288

Query: 300 NVNSKNGGDWMMEIYDQTHP 319
            V+     + +M +YD+ HP
Sbjct: 289 AVSV----NRLMAVYDRAHP 304


>gi|329571728|gb|EGG53409.1| tyrosine recombinase XerD [Enterococcus faecalis TX1467]
          Length = 305

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 163/304 (53%), Gaps = 20/304 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L+IERGLS  T +SYE D ++++ FL     ++  + +  ++    I  F+    
Sbjct: 7   DYLHYLQIERGLSNNTRRSYERDLKKYVAFL-----QEQGLHSWDEVDRYMITEFLQSLH 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            ++    S+ R +S ++ F ++L++ +++  + + ++ + KK   LP  L+       VD
Sbjct: 62  EEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLS-------VD 114

Query: 140 NV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            V  L+ T   +K +  RN AIL ++Y  GLR+SE + +   ++      L+  GKGDK 
Sbjct: 115 EVTRLIETPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKE 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           RI+PL     + I  Y +     L  N   +  LF    G+PL+     + ++Q+ R   
Sbjct: 175 RIIPLGDYAIQWIERYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQ 234

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + T HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT++  +     M ++Y 
Sbjct: 235 IEKNITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQR----MADVYK 290

Query: 316 QTHP 319
           +  P
Sbjct: 291 EHFP 294


>gi|322509106|gb|ADX04560.1| xerC [Acinetobacter baumannii 1656-2]
 gi|323519136|gb|ADX93517.1| site-specific recombinase XerC [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 295

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 174/310 (56%), Gaps = 24/310 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+  +I+   S+ T+ +YE D + FL F      +K+ +   R +  +++R ++++R  
Sbjct: 2   WLKERKIQ-NQSEHTITAYERDVKSFLEFCEL---KKVDL---RNVEASDLREYLAQRVE 54

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           Q ++   S++R L+ I+ F+K+ ++ K    +   + +  ++   LP  ++ +    ++D
Sbjct: 55  QDQLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILD 114

Query: 140 NVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             +     + + W+  R+ A+L LLY  GLR++E   LT ++I  ++  +RI GKG+K R
Sbjct: 115 QPMPEKPVDQQLWL--RDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTR 172

Query: 199 IVPLLPSVRKAILEY---YDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           IVP     ++++L +   Y++    FD N ++    F   RG  L P   ++ ++   + 
Sbjct: 173 IVPFGKKAKESLLNWLKIYNIWKGHFDQNASV----FISQRGGALTPRQIEKRVKLQAQR 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+ +    H LRH FA+H+LS+ GDLRS+Q +LGH  LSTTQIYT+++     D + ++
Sbjct: 229 AGVNVDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHLAQV 284

Query: 314 YDQTHPSITQ 323
           YDQ HP  T+
Sbjct: 285 YDQAHPRATK 294


>gi|92115230|ref|YP_575158.1| phage integrase [Chromohalobacter salexigens DSM 3043]
 gi|123083908|sp|Q1QSU9|XERC_CHRSD RecName: Full=Tyrosine recombinase xerC
 gi|91798320|gb|ABE60459.1| phage integrase [Chromohalobacter salexigens DSM 3043]
          Length = 298

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 97/296 (32%), Positives = 146/296 (49%), Gaps = 23/296 (7%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  TL +Y  D      FL     E   I     L   ++R F+   RT+ +  RSL R 
Sbjct: 17  SPATLDAYRRDLTALARFL-----EASGIDDWAALDVAQVRRFMGAERTRGLAPRSLARR 71

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
            + +  F  +L +  I   + +   +  ++   LPR ++  Q    +D     T H+   
Sbjct: 72  RAALSRFADHLVRSGILDHNPVALTQTPRQPRHLPRPVDVDQLARFLD-----TPHDGTP 126

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGDKIRIVPLLPSVRKAI 210
           +  R+ A+L L Y CGLR++E   LT  ++ D D   LR+ GKG+K R +P+    + A+
Sbjct: 127 LAVRDQAMLELFYSCGLRLAE---LTALDVTDLDARRLRVVGKGNKPRQMPIGRRAQAAL 183

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            ++Y L    L  + +  LF G RG  L     Q+ + QL R  GL      H LRHSFA
Sbjct: 184 ADWYRLR-GQLAGHDEPALFVGQRGARLGHRAVQKRLAQLARERGLAEHLHPHRLRHSFA 242

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW--MMEIYDQTHPSITQK 324
           +HLL +  DLR++Q +LGH  LSTTQ+YT +      DW  + + YDQ HP   ++
Sbjct: 243 SHLLESSQDLRAVQELLGHANLSTTQVYTRL------DWQHLADAYDQAHPRARRR 292


>gi|315127593|ref|YP_004069596.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas sp.
           SM9913]
 gi|315016107|gb|ADT69445.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas sp.
           SM9913]
          Length = 308

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 160/301 (53%), Gaps = 17/301 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L +L +E+G+S+ TL +Y  D  +F  FL    E  +T+ ++      ++ ++++ R
Sbjct: 23  ETFLDSLYLEQGVSENTLSAYRSDLDKFCQFLK--GESLMTVTSL------DVESYLAHR 74

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +  RS  RS+S +K F +Y  + KI ++S ++N+   K   SLP+ L+E +     
Sbjct: 75  VDLGLKPRSTARSISALKRFYQYFVREKIISDSPMVNIAQPKAGQSLPKTLSEAEV---- 130

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL   +  + +  R+ A+L LLY  GLR++E + L  + I   Q+ + ++GKG+K R
Sbjct: 131 -EALLSAPNIEEPMGLRDKAMLELLYATGLRVTELVGLRMEQINLRQAVVFVKGKGNKER 189

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VPL       + ++  L    +  +    +F   RG  +    F   I+       +  
Sbjct: 190 LVPLGEEAMYWLEQFLKLGRAQMIKHATDFVFPSKRGVGMTRQTFWHRIKHYAILASVES 249

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V      + +  ++ + H
Sbjct: 250 PLSPHTLRHAFATHLLNHGADLRVVQMMLGHSDLSTTQIYTHV----ANERLKSVHAEHH 305

Query: 319 P 319
           P
Sbjct: 306 P 306


>gi|332286571|ref|YP_004418482.1| site-specific tyrosine recombinase XerC [Pusillimonas sp. T7-7]
 gi|330430524|gb|AEC21858.1| site-specific tyrosine recombinase XerC [Pusillimonas sp. T7-7]
          Length = 316

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 99/322 (30%), Positives = 157/322 (48%), Gaps = 31/322 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + WL +L+  R  S  TL  Y  D    +   A    +  T   IRQ         +++ 
Sbjct: 9   EQWLAHLQGHRRYSIHTLSGYRQDLHHLIQCHADLKLDHCTESHIRQA--------VARL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q +  RSL R+L+  + F ++   +     + +  +R  K   SLP+AL+ +Q   L+
Sbjct: 61  HGQGLQPRSLARALAAWRGFFQWWAPQAGMESNPVAGVRAPKIPRSLPKALSVEQTQVLL 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI------------MDDQS 186
           D   L        ID R+ A+  +LY  GLR++E +SL  +              +D+Q 
Sbjct: 121 DRPQLPAPDTA--IDCRDQAMFEVLYSSGLRLAELVSLDWRYARTGGYESQSWVQLDEQE 178

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLNPGV 242
            + ++GKG K R VPL      AI  +      L     + +    LF G RGK ++P V
Sbjct: 179 AI-VKGKGGKTRNVPLGGKAIAAIQTWLQKRDQLLGGSSDPDTAAALFLGARGKRISPRV 237

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            Q  + +L   +GLP+    H+LRHSFA+H+L +  DLR++Q +LGH  +STTQIYT ++
Sbjct: 238 VQLQLNKLATLVGLPVHVHPHSLRHSFASHMLQSAQDLRAVQELLGHANISTTQIYTRLD 297

Query: 303 SKNGGDWMMEIYDQTHPSITQK 324
            ++    + + YDQ HP   +K
Sbjct: 298 FQH----LAQAYDQAHPRAGRK 315


>gi|315163991|gb|EFU08008.1| tyrosine recombinase XerD [Enterococcus faecalis TX1302]
          Length = 296

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 163/304 (53%), Gaps = 20/304 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L+IERGLS  T +SYE D ++++ FL     ++  + +  ++    I  F+    
Sbjct: 7   DYLHYLQIERGLSNNTRRSYERDLKKYVAFL-----QEQGLHSWDEVDRYMITEFLQSLH 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            ++    S+ R +S ++ F ++L++ +++  + + ++ + KK   LP  L+       VD
Sbjct: 62  EEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLS-------VD 114

Query: 140 NV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            V  L+ T   +K +  RN AIL ++Y  GLR+SE + +   ++      L+  GKGDK 
Sbjct: 115 EVTRLIETPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKE 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           RI+PL     + I  Y +     L  N   +  LF    G+PL+     + ++Q+ R   
Sbjct: 175 RIIPLGDYAIQWIQRYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQ 234

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + T HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT++  +     M ++Y 
Sbjct: 235 IEKNITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQR----MADVYK 290

Query: 316 QTHP 319
           +  P
Sbjct: 291 EHFP 294


>gi|296112007|ref|YP_003622389.1| integrase/recombinase [Leuconostoc kimchii IMSNU 11154]
 gi|295833539|gb|ADG41420.1| integrase/recombinase [Leuconostoc kimchii IMSNU 11154]
          Length = 298

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 159/301 (52%), Gaps = 16/301 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  + IERGLS  T++SY+ D +QF +++   T E + +  +    +  I  ++++ R
Sbjct: 11  DYLHYIRIERGLSDNTIKSYQQDLKQFSVYM---TAENLNLNAV---DHVVILTWLNQLR 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                + S+ R ++ ++ F  YL +  +   + + +++  KK+  LP  L+  +      
Sbjct: 65  ELNKSNNSVIRMVTSLRKFFGYLLQENVIRHNPMSDVKPPKKAEHLPAVLSVAEI----- 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           + LL    E   +  RN A++ ++Y  GLR+SE ++L   ++      ++  GKGDK RI
Sbjct: 120 DALLQVPTEKTALGLRNRALIEVMYATGLRVSELVNLKMSDLHLQLGLIQTIGKGDKERI 179

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +P+     + +  Y+      L  +   P +F   RG  L+     + I+ L    G+  
Sbjct: 180 IPIGEIATEWLERYFSHSRLTLLKDKVSPFVFLNDRGTQLSRQGVWKIIKNLVSAAGIDK 239

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HTLRHSFATH+L NG DLR +Q +LGH  +STTQIYT+++ K     + E+YD  H
Sbjct: 240 DVSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKR----LSEVYDAFH 295

Query: 319 P 319
           P
Sbjct: 296 P 296


>gi|328952112|ref|YP_004369446.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109]
 gi|328452436|gb|AEB08265.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109]
          Length = 295

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 102/302 (33%), Positives = 154/302 (50%), Gaps = 15/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + Q+L +ERGL+ LT+++Y  D      FL      +    T+  L +     F++  
Sbjct: 6   EQFFQHLIVERGLAPLTVEAYAHDLAGLRSFLTGLGRSRWDETTLEDLQF-----FLNHL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q +G RS  R LS ++   ++L  R+ TT  N L   +   S  LP+ L     L  V
Sbjct: 61  EEQGVGPRSRARKLSAVRQLYRFLL-RQGTTSHNPLEWLD---SPKLPKGLPTVLGLEEV 116

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D  LL     T  +  R+ A+L LLY  G+R+SE + LT   +   +  + ++GKG K R
Sbjct: 117 DR-LLAAPDPTTPLGQRDDAMLELLYATGMRVSELVGLTASQLDLRRGVVLVRGKGGKER 175

Query: 199 IVPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           ++P+ + +V K  L    + P  L       LF    G  L    F + ++   R  GLP
Sbjct: 176 LIPMVMRAVEKLQLYLQYVRPVLLKRQKTPELFLNRSGTGLTRQGFWKILKGYARQTGLP 235

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + HTLRHSFATHLL  G DLR++Q +LGH  +STTQIYT++++      + EI+ Q 
Sbjct: 236 KDLSPHTLRHSFATHLLWQGADLRALQLLLGHADISTTQIYTHLHTAR----LQEIHRQA 291

Query: 318 HP 319
           HP
Sbjct: 292 HP 293


>gi|29376101|ref|NP_815255.1| integrase/recombinase XerD, putative [Enterococcus faecalis V583]
 gi|227518728|ref|ZP_03948777.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           TX0104]
 gi|227553337|ref|ZP_03983386.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           HH22]
 gi|255975876|ref|ZP_05426462.1| phage integrase [Enterococcus faecalis T2]
 gi|256619040|ref|ZP_05475886.1| integrase [Enterococcus faecalis ATCC 4200]
 gi|256762466|ref|ZP_05503046.1| phage integrase [Enterococcus faecalis T3]
 gi|256958957|ref|ZP_05563128.1| integrase [Enterococcus faecalis DS5]
 gi|256961950|ref|ZP_05566121.1| phage integrase [Enterococcus faecalis Merz96]
 gi|256965148|ref|ZP_05569319.1| phage integrase [Enterococcus faecalis HIP11704]
 gi|257078988|ref|ZP_05573349.1| phage integrase [Enterococcus faecalis JH1]
 gi|257082573|ref|ZP_05576934.1| phage integrase [Enterococcus faecalis E1Sol]
 gi|257085206|ref|ZP_05579567.1| phage integrase [Enterococcus faecalis Fly1]
 gi|257086767|ref|ZP_05581128.1| phage integrase [Enterococcus faecalis D6]
 gi|257416070|ref|ZP_05593064.1| integrase [Enterococcus faecalis AR01/DG]
 gi|257419273|ref|ZP_05596267.1| phage integrase [Enterococcus faecalis T11]
 gi|293383018|ref|ZP_06628936.1| tyrosine recombinase XerD [Enterococcus faecalis R712]
 gi|293389493|ref|ZP_06633950.1| tyrosine recombinase XerD [Enterococcus faecalis S613]
 gi|294781340|ref|ZP_06746683.1| tyrosine recombinase XerD [Enterococcus faecalis PC1.1]
 gi|300860304|ref|ZP_07106391.1| tyrosine recombinase XerD [Enterococcus faecalis TUSoD Ef11]
 gi|307271041|ref|ZP_07552324.1| tyrosine recombinase XerD [Enterococcus faecalis TX4248]
 gi|307273248|ref|ZP_07554494.1| tyrosine recombinase XerD [Enterococcus faecalis TX0855]
 gi|307274985|ref|ZP_07556148.1| tyrosine recombinase XerD [Enterococcus faecalis TX2134]
 gi|307278097|ref|ZP_07559181.1| tyrosine recombinase XerD [Enterococcus faecalis TX0860]
 gi|312907511|ref|ZP_07766502.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 512]
 gi|312910129|ref|ZP_07768976.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 516]
 gi|29343563|gb|AAO81325.1| integrase/recombinase XerD, putative [Enterococcus faecalis V583]
 gi|227073809|gb|EEI11772.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           TX0104]
 gi|227177524|gb|EEI58496.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           HH22]
 gi|255968748|gb|EET99370.1| phage integrase [Enterococcus faecalis T2]
 gi|256598567|gb|EEU17743.1| integrase [Enterococcus faecalis ATCC 4200]
 gi|256683717|gb|EEU23412.1| phage integrase [Enterococcus faecalis T3]
 gi|256949453|gb|EEU66085.1| integrase [Enterococcus faecalis DS5]
 gi|256952446|gb|EEU69078.1| phage integrase [Enterococcus faecalis Merz96]
 gi|256955644|gb|EEU72276.1| phage integrase [Enterococcus faecalis HIP11704]
 gi|256987018|gb|EEU74320.1| phage integrase [Enterococcus faecalis JH1]
 gi|256990603|gb|EEU77905.1| phage integrase [Enterococcus faecalis E1Sol]
 gi|256993236|gb|EEU80538.1| phage integrase [Enterococcus faecalis Fly1]
 gi|256994797|gb|EEU82099.1| phage integrase [Enterococcus faecalis D6]
 gi|257157898|gb|EEU87858.1| integrase [Enterococcus faecalis ARO1/DG]
 gi|257161101|gb|EEU91061.1| phage integrase [Enterococcus faecalis T11]
 gi|291079683|gb|EFE17047.1| tyrosine recombinase XerD [Enterococcus faecalis R712]
 gi|291081110|gb|EFE18073.1| tyrosine recombinase XerD [Enterococcus faecalis S613]
 gi|294451570|gb|EFG20029.1| tyrosine recombinase XerD [Enterococcus faecalis PC1.1]
 gi|300849343|gb|EFK77093.1| tyrosine recombinase XerD [Enterococcus faecalis TUSoD Ef11]
 gi|306505494|gb|EFM74680.1| tyrosine recombinase XerD [Enterococcus faecalis TX0860]
 gi|306508433|gb|EFM77540.1| tyrosine recombinase XerD [Enterococcus faecalis TX2134]
 gi|306510233|gb|EFM79257.1| tyrosine recombinase XerD [Enterococcus faecalis TX0855]
 gi|306512539|gb|EFM81188.1| tyrosine recombinase XerD [Enterococcus faecalis TX4248]
 gi|310626539|gb|EFQ09822.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 512]
 gi|311289402|gb|EFQ67958.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 516]
 gi|315027289|gb|EFT39221.1| tyrosine recombinase XerD [Enterococcus faecalis TX2137]
 gi|315033946|gb|EFT45878.1| tyrosine recombinase XerD [Enterococcus faecalis TX0017]
 gi|315036955|gb|EFT48887.1| tyrosine recombinase XerD [Enterococcus faecalis TX0027]
 gi|315144440|gb|EFT88456.1| tyrosine recombinase XerD [Enterococcus faecalis TX2141]
 gi|315147241|gb|EFT91257.1| tyrosine recombinase XerD [Enterococcus faecalis TX4244]
 gi|315150560|gb|EFT94576.1| tyrosine recombinase XerD [Enterococcus faecalis TX0012]
 gi|315160468|gb|EFU04485.1| tyrosine recombinase XerD [Enterococcus faecalis TX0645]
 gi|315169058|gb|EFU13075.1| tyrosine recombinase XerD [Enterococcus faecalis TX1341]
 gi|315172335|gb|EFU16352.1| tyrosine recombinase XerD [Enterococcus faecalis TX1346]
 gi|315575890|gb|EFU88081.1| tyrosine recombinase XerD [Enterococcus faecalis TX0309B]
 gi|315580542|gb|EFU92733.1| tyrosine recombinase XerD [Enterococcus faecalis TX0309A]
 gi|323480700|gb|ADX80139.1| tyrosine recombinase XerD [Enterococcus faecalis 62]
          Length = 296

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 163/304 (53%), Gaps = 20/304 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L+IERGLS  T +SYE D ++++ FL     ++  + +  ++    I  F+    
Sbjct: 7   DYLHYLQIERGLSNNTRRSYERDLKKYVAFL-----QEQGLHSWDEVDRYMITEFLQSLH 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            ++    S+ R +S ++ F ++L++ +++  + + ++ + KK   LP  L+       VD
Sbjct: 62  EEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLS-------VD 114

Query: 140 NV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            V  L+ T   +K +  RN AIL ++Y  GLR+SE + +   ++      L+  GKGDK 
Sbjct: 115 EVTRLIETPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKE 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           RI+PL     + I  Y +     L  N   +  LF    G+PL+     + ++Q+ R   
Sbjct: 175 RIIPLGDYAIQWIERYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQ 234

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + T HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT++  +     M ++Y 
Sbjct: 235 IEKNITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQR----MADVYK 290

Query: 316 QTHP 319
           +  P
Sbjct: 291 EHFP 294


>gi|285019335|ref|YP_003377046.1| tyrosine recombinase [Xanthomonas albilineans GPE PC73]
 gi|283474553|emb|CBA17054.1| probable tyrosine recombinase protein [Xanthomonas albilineans]
          Length = 296

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 156/308 (50%), Gaps = 25/308 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L +ER +S  TL +Y    R+ L  L  +  + +  +    L   ++R FI+   
Sbjct: 10  EFLAYLRVERRMSAHTLDAY----RRDLAALTTWAADNLLGEPA-ALGAEQLRQFIAAEH 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +  +SL+R LS  +SF  +L K      S    +R  K    LP+ L+  +A+ LV+
Sbjct: 65  RRGLSPKSLQRRLSACRSFYVWLLKHGHIEASPAAALRAPKAPRKLPQVLDADEAVRLVE 124

Query: 140 ---NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
              +V L           R+ A+L L Y  GLR+SE  +L  +++      + + GKG K
Sbjct: 125 VPTDVPL---------GLRDRALLELFYSSGLRLSELCALRWRDLDAASGLVSVHGKGGK 175

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+VP+    RKA+ E+ +    +   +   P+F G  G P+     Q  I+QL    GL
Sbjct: 176 QRLVPIGSHARKALSEWRE----EHCADAAAPVFPGRGGVPIGARAVQIRIKQLAARQGL 231

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRHSFA+H+L + GDLR +Q +LGH  ++TTQIYT+++ ++    + ++YD 
Sbjct: 232 FKHVHPHMLRHSFASHILESSGDLRGVQELLGHADIATTQIYTHLDFQH----LAKVYDA 287

Query: 317 THPSITQK 324
            HP   +K
Sbjct: 288 AHPRAKRK 295


>gi|15600473|ref|NP_253967.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa
           PAO1]
 gi|254238023|ref|ZP_04931346.1| site-specific recombinase Sss [Pseudomonas aeruginosa C3719]
 gi|34222782|sp|Q51566|XERC_PSEAE RecName: Full=Tyrosine recombinase xerC
 gi|9951593|gb|AAG08665.1|AE004940_9 site-specific recombinase Sss [Pseudomonas aeruginosa PAO1]
 gi|126169954|gb|EAZ55465.1| site-specific recombinase Sss [Pseudomonas aeruginosa C3719]
          Length = 303

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 156/309 (50%), Gaps = 27/309 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L++L  ER +S  TL  Y    R  L  LA    EK  +     L    +R F+++   
Sbjct: 8   FLEHLRSERQVSAHTLDGYR---RDLLKILAL--AEKAGLSDWNALDTRSLRTFVARLHQ 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q    RSL R LS  +   +YL +           +   K    LPR L+  +AL L+D 
Sbjct: 63  QGQSSRSLARLLSATRGLYQYLLREGRCRHDPANGLSAPKSPRKLPRTLDADRALQLLDG 122

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +     E  +I  R+ A+L L Y  GLR+SE + L  + +   +  +R++GKG+K+R +
Sbjct: 123 AV-----EDDFIARRDQALLELFYSSGLRLSELVGLDLEWLDLKEGLVRVRGKGNKVREL 177

Query: 201 PLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR-RYLG 255
           P+  + R+A+  +  L     P D        +F G  GK L P   Q  +RQ   R LG
Sbjct: 178 PVGKAARQALEAWLPLRTQAAPEDG------AVFIGRSGKRLTPRAIQLRVRQAGVRELG 231

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
             L    H LRHSFA+HLL + GDLR++Q +LGH  ++TTQIYT+++ ++    +  +YD
Sbjct: 232 QHLHP--HMLRHSFASHLLESSGDLRAVQELLGHADIATTQIYTHLDFQH----LASVYD 285

Query: 316 QTHPSITQK 324
           + HP   +K
Sbjct: 286 RAHPRAKRK 294


>gi|119470495|ref|ZP_01613198.1| site-specific tyrosine recombinase XerD [Alteromonadales bacterium
           TW-7]
 gi|119446196|gb|EAW27473.1| site-specific tyrosine recombinase XerD [Alteromonadales bacterium
           TW-7]
          Length = 308

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 158/301 (52%), Gaps = 17/301 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L +L +E+G+S+ TL +Y  D  +F  FL          + +  ++  +I ++++ R
Sbjct: 23  ETFLDSLYLEQGVSENTLSAYRSDLDKFCQFLKG--------ENLMTVTGHDIESYLAHR 74

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +  RS  RS+S +K F +Y  + K+ T++ +LN+   K   SLP+ L+E +     
Sbjct: 75  VDLGLKPRSTARSISALKRFYQYFVREKMITDTPMLNIAQPKAGQSLPKTLSETEV---- 130

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL+  +  + +  R+ A+L LLY  GLR+SE + L  + I   Q+ + ++GKG+K R
Sbjct: 131 -EALLNAPNTEEPMGLRDKAMLELLYATGLRVSELVGLRMEQINLRQAVVFVKGKGNKER 189

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VPL       +  +  +    +  +    +F   RG  +    F   I+       +  
Sbjct: 190 LVPLGEEAMHWLELFLKVGRAQMIKHATDFVFPSKRGVGMTRQTFWHRIKHYAILASVES 249

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V      + +  ++ Q H
Sbjct: 250 PLSPHTLRHAFATHLLNHGADLRVVQMMLGHSDLSTTQIYTHV----ANERLKSVHAQHH 305

Query: 319 P 319
           P
Sbjct: 306 P 306


>gi|47568147|ref|ZP_00238851.1| integrase/recombinase XerD [Bacillus cereus G9241]
 gi|222097540|ref|YP_002531597.1| site-specific tyrosine recombinase xerd [Bacillus cereus Q1]
 gi|47555137|gb|EAL13484.1| integrase/recombinase XerD [Bacillus cereus G9241]
 gi|221241598|gb|ACM14308.1| integrase/recombinase (tyrosine recombinase) [Bacillus cereus Q1]
          Length = 285

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 156/296 (52%), Gaps = 18/296 (6%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +E+GL+K T+ SYE D + ++ +L    + K    +  +++   I  F+   +      +
Sbjct: 3   VEKGLAKNTVVSYERDLKSYVKYLQNVEQAK----SFHEVTRLHIVNFLQHLKENGKSSK 58

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--LLH 144
           +L R ++ I+SF ++L + +       +++   +    LP+ L+       VD V  LL 
Sbjct: 59  TLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLS-------VDEVEALLQ 111

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           T   T     R+ A+L LLY  GLR+SE ++L  +++      +R  GKG+K RI+PL  
Sbjct: 112 TPKMTSAFGVRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGS 171

Query: 205 SVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              +AI +Y +    +L    +   LF    G  L+   F + +++L +   +    T H
Sbjct: 172 LATEAIQKYIEKGRRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPH 231

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           TLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + ++Y Q HP
Sbjct: 232 TLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKDVYKQFHP 283


>gi|118579574|ref|YP_900824.1| tyrosine recombinase XerD [Pelobacter propionicus DSM 2379]
 gi|118502284|gb|ABK98766.1| tyrosine recombinase XerD subunit [Pelobacter propionicus DSM 2379]
          Length = 295

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 98/300 (32%), Positives = 155/300 (51%), Gaps = 15/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  + +ERGL+  T Q+Y  D  ++L FLA   + +       +++  +I +F+ + R 
Sbjct: 8   FLGYIAVERGLATNTRQAYSRDLGRYLDFLAERGKNEPA-----EVTAADIASFLVRLRD 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   S  R LS I+ F K+L   K   ++    +   +  + LP  L   +    VD 
Sbjct: 63  EGLAPASRARCLSAIRMFHKFLMIEKYCDDNPSAILEAPRTLHKLPAFLEPAE----VDR 118

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            L      T   D R+ A+L LLY  GLR+SE +++T + +  D   L + GKGDK R+V
Sbjct: 119 -LFSACAGTSGEDLRDRAMLELLYATGLRVSELVTITLRQVNLDVGYLMVVGKGDKERLV 177

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+  S R  +  Y +   + L+   + P LF    G  ++   F   IR+  +   +   
Sbjct: 178 PIGESARGRVRRYIEEARYRLDPQGRTPHLFLSRLGDAMSRQAFWNLIRKRAKLAAIAKD 237

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRHSFATHLL NG DLRS+Q +LGH  LS+TQIYT+V  +     +  ++ + HP
Sbjct: 238 ISPHTLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRER----LKRLHQEIHP 293


>gi|147677545|ref|YP_001211760.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
 gi|146273642|dbj|BAF59391.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
          Length = 295

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 159/302 (52%), Gaps = 15/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + ++ +L +ERGLS+ TL SY  D  +F+ F A     K  ++++ Q     + A++ + 
Sbjct: 6   EEFIYHLAVERGLSENTLVSYRADLAKFISFCA-----KAGLKSVEQAGRDTVMAYLFQL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +       ++ R L+ I++F ++     I       ++   K +  LPR L+ ++     
Sbjct: 61  QLDGRSTATISRHLASIRAFYRFAVGEGILPADPSSDLETPKPAQKLPRVLSVEEV---- 116

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            ++L+      +    R+ A+L LLY  G+R+SE +SL  +++  +   +R  GKG + R
Sbjct: 117 -DLLMGQPGSGEPAGLRDKAMLELLYATGMRVSELVSLNLEHVNLENGFVRCLGKGSRER 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           I+P+     + + EY +   + L+   +   LF    G+ L    F + I++  R   + 
Sbjct: 176 IIPVGDVAVRWLKEYLERARYKLSKPGRTDALFVNQHGRRLTRQGFWKIIKKYARKAKIK 235

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT++        + ++Y++T
Sbjct: 236 KVITPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHLTRNR----LRDVYNRT 291

Query: 318 HP 319
           HP
Sbjct: 292 HP 293


>gi|319649574|ref|ZP_08003730.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2]
 gi|317398736|gb|EFV79418.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2]
          Length = 300

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 160/301 (53%), Gaps = 16/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +++ L+IE+  S+ T++ Y+ D  +F +F+A     +  I  + +++Y ++R ++++   
Sbjct: 12  FIEYLQIEKNYSQYTIEHYQHDISEFFMFMA-----EQAIADLTKVAYQDVRIYLTELYD 66

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +K+  +S+ R +S ++SF K+L + +   E+    +   K    LP    E + + L + 
Sbjct: 67  KKMSRKSVARKISSLRSFFKFLLREEKVAENPFALVSIPKAQKKLPEFFYEAEMMQLFNA 126

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
               T      +  RN A+L LLY  G+R+SE   +  +++    ST+ ++GKG K R V
Sbjct: 127 CEASTP-----LGQRNKALLELLYATGIRVSECSQIRLKDLDMYLSTVLVRGKGSKERYV 181

Query: 201 PLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           P     + A+  Y +     L  N N+Q  LF   RG PL     +  + ++     L  
Sbjct: 182 PFGSFAQDALDTYINHGREKLLANGNVQENLFLNARGGPLTARGIRTILDRIIEKSSLTG 241

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRH+FATHL++NG D+R++Q +LGH  LS+TQ+YT+V +    +++ + Y   H
Sbjct: 242 KIHPHMLRHTFATHLMANGADMRTVQELLGHAFLSSTQVYTHVTN----EYLKKTYMAHH 297

Query: 319 P 319
           P
Sbjct: 298 P 298


>gi|107104381|ref|ZP_01368299.1| hypothetical protein PaerPA_01005457 [Pseudomonas aeruginosa PACS2]
 gi|116053429|ref|YP_793754.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218894383|ref|YP_002443253.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa
           LESB58]
 gi|254243833|ref|ZP_04937155.1| site-specific recombinase Sss [Pseudomonas aeruginosa 2192]
 gi|296392138|ref|ZP_06881613.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa
           PAb1]
 gi|313106696|ref|ZP_07792914.1| site-specific recombinase [Pseudomonas aeruginosa 39016]
 gi|122256552|sp|Q02E82|XERC_PSEAB RecName: Full=Tyrosine recombinase xerC
 gi|254799351|sp|B7V5H1|XERC_PSEA8 RecName: Full=Tyrosine recombinase xerC
 gi|115588650|gb|ABJ14665.1| site-specific recombinase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126197211|gb|EAZ61274.1| site-specific recombinase Sss [Pseudomonas aeruginosa 2192]
 gi|218774612|emb|CAW30429.1| site-specific recombinase Sss [Pseudomonas aeruginosa LESB58]
 gi|310879416|gb|EFQ38010.1| site-specific recombinase [Pseudomonas aeruginosa 39016]
          Length = 303

 Score =  142 bits (357), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 156/309 (50%), Gaps = 27/309 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L++L  ER +S  TL  Y    R  L  LA    EK  +     L    +R F+++   
Sbjct: 8   FLEHLRSERQVSAHTLDGYR---RDLLKILAL--AEKAGLSDWNALDTRSLRTFVARLHQ 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q    RSL R LS  +   +YL +           +   K    LPR L+  +AL L+D 
Sbjct: 63  QGQSSRSLARLLSATRGLYQYLLREGRCRHDPANGLSAPKSPRKLPRTLDADRALQLLDG 122

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +     E  +I  R+ A+L L Y  GLR+SE + L  + +   +  +R++GKG+K+R +
Sbjct: 123 AV-----EDDFIARRDQALLELFYSSGLRLSELVGLDLEWLDLKEGLVRVRGKGNKVREL 177

Query: 201 PLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR-RYLG 255
           P+  + R+A+  +  L     P D        +F G  GK L P   Q  +RQ   R LG
Sbjct: 178 PVGKAARQALEAWLPLRAQAAPEDG------AVFIGRGGKRLTPRAIQLRVRQAGVRELG 231

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
             L    H LRHSFA+HLL + GDLR++Q +LGH  ++TTQIYT+++ ++    +  +YD
Sbjct: 232 QHLHP--HMLRHSFASHLLESSGDLRAVQELLGHADIATTQIYTHLDFQH----LASVYD 285

Query: 316 QTHPSITQK 324
           + HP   +K
Sbjct: 286 RAHPRAKRK 294


>gi|229550039|ref|ZP_04438764.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           ATCC 29200]
 gi|255972820|ref|ZP_05423406.1| phage integrase [Enterococcus faecalis T1]
 gi|257089862|ref|ZP_05584223.1| phage integrase [Enterococcus faecalis CH188]
 gi|257422642|ref|ZP_05599632.1| phage integrase [Enterococcus faecalis X98]
 gi|312951470|ref|ZP_07770366.1| tyrosine recombinase XerD [Enterococcus faecalis TX0102]
 gi|229304845|gb|EEN70841.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           ATCC 29200]
 gi|255963838|gb|EET96314.1| phage integrase [Enterococcus faecalis T1]
 gi|256998674|gb|EEU85194.1| phage integrase [Enterococcus faecalis CH188]
 gi|257164466|gb|EEU94426.1| phage integrase [Enterococcus faecalis X98]
 gi|310630436|gb|EFQ13719.1| tyrosine recombinase XerD [Enterococcus faecalis TX0102]
 gi|315152507|gb|EFT96523.1| tyrosine recombinase XerD [Enterococcus faecalis TX0031]
 gi|315155785|gb|EFT99801.1| tyrosine recombinase XerD [Enterococcus faecalis TX0043]
 gi|315158048|gb|EFU02065.1| tyrosine recombinase XerD [Enterococcus faecalis TX0312]
 gi|315577730|gb|EFU89921.1| tyrosine recombinase XerD [Enterococcus faecalis TX0630]
 gi|327535109|gb|AEA93943.1| tyrosine recombinase XerD [Enterococcus faecalis OG1RF]
          Length = 296

 Score =  142 bits (357), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 163/304 (53%), Gaps = 20/304 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L+IERGLS  T +SYE D ++++ FL     ++  + +  ++    I  F+    
Sbjct: 7   DYLHYLQIERGLSNNTRRSYERDLKKYVAFL-----QEQGLHSWDEVDRYMITEFLQSLH 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            ++    S+ R +S ++ F ++L++ +++  + + ++ + KK   LP  L+       VD
Sbjct: 62  EEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLS-------VD 114

Query: 140 NV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            V  L+ T   +K +  RN AIL ++Y  GLR+SE + +   ++      L+  GKGDK 
Sbjct: 115 EVTRLIETPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKE 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           RI+PL     + I  Y +     L  N   +  LF    G+PL+     + ++Q+ R   
Sbjct: 175 RIIPLGDYAIQWIERYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAR 234

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + T HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT++  +     M ++Y 
Sbjct: 235 IEKNITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQR----MADVYK 290

Query: 316 QTHP 319
           +  P
Sbjct: 291 EHFP 294


>gi|193214435|ref|YP_001995634.1| integrase family protein [Chloroherpeton thalassium ATCC 35110]
 gi|193087912|gb|ACF13187.1| integrase family protein [Chloroherpeton thalassium ATCC 35110]
          Length = 336

 Score =  142 bits (357), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 102/325 (31%), Positives = 163/325 (50%), Gaps = 33/325 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFL----AFYTEEKITIQTIRQLSYTEIRAFIS 76
           +L+ L  ER +S  T+ +Y  D  QFL FL       + + I++  +     + IR F+ 
Sbjct: 17  FLKYLANERNMSAYTVTAYRKDLSQFLEFLKKEFELPSSQDISLADVET---STIRLFLG 73

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           +        +S+ R L+ +KSF K+L        S   N+   K   +LP  LNE Q  T
Sbjct: 74  ELLDAGYQSKSIGRKLASVKSFFKFLVYINHLPASPAANVTTPKAKKTLPTFLNETQTQT 133

Query: 137 LVDNVLLH-----------TSHET----KWI--DARNSAILYLLYGCGLRISEALSLTPQ 179
           L D +L H             HE     +W     R+ AIL + Y CGLR++E + L   
Sbjct: 134 LFDEILDHFNEAFYHDNRAKKHEKVNTLEWDFRYNRDRAILEMFYSCGLRLAELIGLNIM 193

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP--FDL---NLNIQLPLFRGIR 234
            +      +++ GKG K RI+PL  S +K +  Y ++    F++   N+  +  +F   +
Sbjct: 194 ELDFQNGFVKVLGKGRKQRIIPLGESAQKTLKNYLEIKKKFFEMKRSNVLEREAVFVTEK 253

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           GK + P + QR +++    +      + H LRH+FATHLL+NG DLRS+  +LGH  LST
Sbjct: 254 GKRVYPVLVQRLVKKYLSPVTEQKKKSPHVLRHTFATHLLNNGADLRSVSEMLGHSNLST 313

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHP 319
           T+IYT+++     + + ++Y Q HP
Sbjct: 314 TEIYTHISF----ERLKQVYQQAHP 334


>gi|312962849|ref|ZP_07777336.1| integrase/recombinase XerD [Pseudomonas fluorescens WH6]
 gi|311282876|gb|EFQ61470.1| integrase/recombinase XerD [Pseudomonas fluorescens WH6]
          Length = 298

 Score =  142 bits (357), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 102/308 (33%), Positives = 158/308 (51%), Gaps = 32/308 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKRR 79
           +L  L +E+GLS  T Q+Y  D     +F  +  E+ +  I   R+L    I   ++ R 
Sbjct: 12  FLDALWLEKGLSDNTRQAYRSD---LALFNGWLQEKHLELINAGREL----ILDHLAWRL 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q    RS  R LSG++ F +YL + K+ T    L +   +    LP++L+E        
Sbjct: 65  EQNYKPRSTARFLSGVRGFYRYLLREKLITLDPTLQIDMPQLGRPLPKSLSEADV----- 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL     ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K R+
Sbjct: 120 EALLAAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179

Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           VP+           +R+A  E     P D+       LF  +RG+ +    F   I+   
Sbjct: 180 VPMGEEAIVWVERYMREARSELLGGRPSDV-------LFPSLRGEQMTRQTFWHRIKHQA 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +  G+  + + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + 
Sbjct: 233 KVAGIGKTLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288

Query: 312 EIYDQTHP 319
           +++ + HP
Sbjct: 289 DMHAKHHP 296


>gi|256003998|ref|ZP_05428984.1| tyrosine recombinase XerD [Clostridium thermocellum DSM 2360]
 gi|281417393|ref|ZP_06248413.1| tyrosine recombinase XerD [Clostridium thermocellum JW20]
 gi|255992126|gb|EEU02222.1| tyrosine recombinase XerD [Clostridium thermocellum DSM 2360]
 gi|281408795|gb|EFB39053.1| tyrosine recombinase XerD [Clostridium thermocellum JW20]
 gi|316940575|gb|ADU74609.1| tyrosine recombinase XerD [Clostridium thermocellum DSM 1313]
          Length = 294

 Score =  142 bits (357), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 159/304 (52%), Gaps = 22/304 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L+ ++ LS  TLQSY+ D  Q++ +L     + + IQ I   + T + A++   +
Sbjct: 7   HFLDFLKNDKRLSLNTLQSYKRDIEQYITYL-----KDMKIQNIANTNKTTVIAYLLHLQ 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +     ++ R+L+ I+SF +YL K+ I ++    N+ + K    LP+ L+ K+      
Sbjct: 62  KKGRATSTISRNLASIRSFYQYLTKKGIISQDPTENLESPKVEKKLPQILSTKEV----- 116

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            +LL           R+ A+L LLY  G+R+SE +SL   ++  +   +R   KG + RI
Sbjct: 117 ELLLEQPKCDDLKGYRDKAMLELLYATGIRVSELISLDLDDVNLEMQYIRC-NKGARERI 175

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           VP+      A+ EY        NL IQ P    LF  + GK L    F + I+Q +    
Sbjct: 176 VPIGSVSVNALQEY---LTKSRNLLIQRPDEKALFVNVNGKRLTRQGFWKIIKQYKNQAK 232

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFA HLL NG DLRSIQ +LGH  +S+TQIY  +      + + EIY 
Sbjct: 233 INKDITPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQL----AKNRIKEIYK 288

Query: 316 QTHP 319
           +THP
Sbjct: 289 KTHP 292


>gi|119478678|ref|ZP_01618568.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143]
 gi|119448404|gb|EAW29656.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143]
          Length = 300

 Score =  142 bits (357), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 99/301 (32%), Positives = 165/301 (54%), Gaps = 18/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  + +ERG+S+ TL SY  D  QF  +L    +++ T+  +R+    +I A+++ R  
Sbjct: 14  FLDGIWMERGVSENTLSSYRQDLMQFNQWL---LDQQTTMLAVRK---NDIEAYLAFRLM 67

Query: 81  QKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           +KI  RS  R LS ++ F +Y L++ +I+ +   L++ + K    LP++L+E+       
Sbjct: 68  RKISARSTARLLSCLRGFYQYQLRESRISLDPT-LDIDSPKMGRPLPKSLSEQDV----- 121

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL+     + ++ R+ A+L LLY  GLR++E ++L    +  +Q  +R+ GKG K R+
Sbjct: 122 EALLNAPDTDEPLELRDKAMLELLYASGLRVTELITLQVGQLSVNQGVVRVMGKGSKERL 181

Query: 200 VPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP        +  Y  D  P  L   +   +F   RG  +    F   I+   +  G+  
Sbjct: 182 VPTGEEALDWLQRYMKDGRPALLGARMSDTMFPSRRGAVMTRQTFWYRIKIYAQRAGIRQ 241

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           S + HTLRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     M +++ Q H
Sbjct: 242 SLSPHTLRHAFATHLINHGADLRVVQLLLGHSDLSTTQIYTHVAKER----MKDLHAQHH 297

Query: 319 P 319
           P
Sbjct: 298 P 298


>gi|289432900|ref|YP_003462773.1| tyrosine recombinase XerD [Dehalococcoides sp. GT]
 gi|288946620|gb|ADC74317.1| tyrosine recombinase XerD [Dehalococcoides sp. GT]
          Length = 302

 Score =  142 bits (357), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 154/302 (50%), Gaps = 9/302 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q++L  L +E+G S+ T ++YE D RQ   F      +   I      +   + A++   
Sbjct: 6   QSFLNYLMVEKGFSENTSEAYENDLRQMTTFADKEAAKSGKIPGWDNFTRQTMLAYMLDL 65

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + +     ++ R ++  KSF  ++       E+   N+   K    LP A++  Q   L+
Sbjct: 66  KERNYAITTVVRKMAAAKSFFNFMVAEGKLKENPTENISTPKVGKPLPDAISISQVRALL 125

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +  +   S E K    R+ A+L LLY  G+R++E ++L   ++   +  +R  GKG K R
Sbjct: 126 NQPVKSGSSEAK----RDKAMLELLYASGMRVTELVNLNMLDVDLKEGFVRCFGKGRKER 181

Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           ++P+ P   +++ EY  ++ P  +    +  LF   RG  L      + ++   R  GL 
Sbjct: 182 MIPIYPQAAQSVQEYLNEIRPNLVRAEAEKALFLNRRGDRLTRQGLWQILKAYAREAGLD 241

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T HTLRHSFATH+LS G DLRS+Q +LGH  +STTQIYT++ S++    +   Y++ 
Sbjct: 242 DVVTPHTLRHSFATHMLSGGADLRSVQELLGHANISTTQIYTHLTSEH----IRRSYEKA 297

Query: 318 HP 319
           HP
Sbjct: 298 HP 299


>gi|229134899|ref|ZP_04263706.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST196]
 gi|228648574|gb|EEL04602.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST196]
          Length = 296

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 161/304 (52%), Gaps = 18/304 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  + +E+GL+K T+ SYE D + ++ +L    + K    T  +++   I  F+   
Sbjct: 6   KDFIHYMIVEKGLAKNTVVSYERDLKSYVKYLQNVEQTK----TFHEVTRLHIVNFLQHL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +      ++L R ++ I+SF ++L + +       +++   +    LP+ L+       +
Sbjct: 62  KENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLS-------I 114

Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           D V  LL T+        R+ A+L LLY  GLR+SE ++L  +++      +R  GKG+K
Sbjct: 115 DEVEALLQTTKTASAFGIRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNK 174

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            RI+PL     +AI +Y +    +L     +  LF    G  L+   F + +++L +   
Sbjct: 175 ERIIPLGSLATEAIQKYIEKGRRELMGKKAVDALFLNHHGNRLSRQGFWKILKRLAKEAN 234

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + ++Y 
Sbjct: 235 IAKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKDVYK 290

Query: 316 QTHP 319
           Q HP
Sbjct: 291 QFHP 294


>gi|125973194|ref|YP_001037104.1| tyrosine recombinase XerD subunit [Clostridium thermocellum ATCC
           27405]
 gi|125713419|gb|ABN51911.1| tyrosine recombinase XerD subunit [Clostridium thermocellum ATCC
           27405]
          Length = 296

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 159/304 (52%), Gaps = 22/304 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L+ ++ LS  TLQSY+ D  Q++ +L     + + IQ I   + T + A++   +
Sbjct: 9   HFLDFLKNDKRLSLNTLQSYKRDIEQYITYL-----KDMKIQNIANTNKTTVIAYLLHLQ 63

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +     ++ R+L+ I+SF +YL K+ I ++    N+ + K    LP+ L+ K+      
Sbjct: 64  KKGRATSTISRNLASIRSFYQYLTKKGIISQDPTENLESPKVEKKLPQILSTKEV----- 118

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            +LL           R+ A+L LLY  G+R+SE +SL   ++  +   +R   KG + RI
Sbjct: 119 ELLLEQPKCDDLKGYRDKAMLELLYATGIRVSELISLDLDDVNLEMQYIRC-NKGARERI 177

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           VP+      A+ EY        NL IQ P    LF  + GK L    F + I+Q +    
Sbjct: 178 VPIGSVSVNALQEY---LTKSRNLLIQRPDEKALFVNVNGKRLTRQGFWKIIKQYKNQAK 234

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFA HLL NG DLRSIQ +LGH  +S+TQIY  +      + + EIY 
Sbjct: 235 INKDITPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQL----AKNRIKEIYK 290

Query: 316 QTHP 319
           +THP
Sbjct: 291 KTHP 294


>gi|193078105|gb|ABO13046.2| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC
           17978]
          Length = 308

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/314 (31%), Positives = 174/314 (55%), Gaps = 32/314 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+  +I+   S+ T+ +Y+ D + FL F      +K+ +   R +  +++R ++++R  
Sbjct: 15  WLKERKIQ-NQSEHTITAYKRDVKSFLEFCEL---KKVDL---RNVEASDLREYLAQRVE 67

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           Q ++   S++R L+ I+ F+K+ ++ K   E N  +   LK+    PR L     + +V+
Sbjct: 68  QDQLSSSSMQRHLTSIRQFMKWAEQGKYL-EINPTDDFKLKRQ---PRPLPGMIDIEMVN 123

Query: 140 NVLLHTSHETK-----WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
            +L     E       W+  R+ A+L LLY  GLR++E   LT ++I  ++  +RI GKG
Sbjct: 124 QILDQPMPEKPVDQQLWL--RDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKG 181

Query: 195 DKIRIVPLLPSVRKAILEY---YDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           +K RIVP     ++++L +   Y++    FD N ++    F   RG  L P   ++ ++ 
Sbjct: 182 NKTRIVPFGKKAKESLLNWLKIYNIWKGHFDQNASV----FISQRGGALTPRQIEKRVKL 237

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +  G+ +    H LRH FA+H+LS+ GDLRS+Q +LGH  LSTTQIYT+++     D 
Sbjct: 238 QAQRAGVNVDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DH 293

Query: 310 MMEIYDQTHPSITQ 323
           + ++YDQ HP  T+
Sbjct: 294 LAQVYDQAHPRATK 307


>gi|73748904|ref|YP_308143.1| tyrosine recombinase XerD [Dehalococcoides sp. CBDB1]
 gi|147669665|ref|YP_001214483.1| tyrosine recombinase XerD subunit [Dehalococcoides sp. BAV1]
 gi|73660620|emb|CAI83227.1| tyrosine recombinase XerD [Dehalococcoides sp. CBDB1]
 gi|146270613|gb|ABQ17605.1| tyrosine recombinase XerD subunit [Dehalococcoides sp. BAV1]
          Length = 302

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 154/302 (50%), Gaps = 9/302 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q++L  L +E+G S+ T ++YE D RQ   F      +   I      +   + A++   
Sbjct: 6   QSFLNYLMVEKGFSENTSEAYENDLRQMTTFADKEAAKSGKIPGWDNFTRQTMLAYMLDL 65

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + +     ++ R ++  KSF  ++       E+   N+   K    LP A++  Q   L+
Sbjct: 66  KERNYAITTVVRKMAAAKSFFNFMVAEGKLKENPTENISTPKVGKPLPDAISISQVRALL 125

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +  +   S E K    R+ A+L LLY  G+R++E ++L   ++   +  +R  GKG K R
Sbjct: 126 NQPIKSGSSEAK----RDKAMLELLYASGMRVTELVNLNMLDVDLKEGFVRCFGKGRKER 181

Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           ++P+ P   +++ EY  ++ P  +    +  LF   RG  L      + ++   R  GL 
Sbjct: 182 MIPIYPQAAQSVQEYLNEIRPNLVRAEAEKALFLNRRGDRLTRQGLWQILKAYAREAGLD 241

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T HTLRHSFATH+LS G DLRS+Q +LGH  +STTQIYT++ S++    +   Y++ 
Sbjct: 242 DVVTPHTLRHSFATHMLSGGADLRSVQELLGHANISTTQIYTHLTSEH----IRRSYEKA 297

Query: 318 HP 319
           HP
Sbjct: 298 HP 299


>gi|293374710|ref|ZP_06621018.1| tyrosine recombinase XerC [Turicibacter sanguinis PC909]
 gi|325840598|ref|ZP_08167079.1| tyrosine recombinase XerC [Turicibacter sp. HGF1]
 gi|292646624|gb|EFF64626.1| tyrosine recombinase XerC [Turicibacter sanguinis PC909]
 gi|325490247|gb|EGC92580.1| tyrosine recombinase XerC [Turicibacter sp. HGF1]
          Length = 301

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/311 (30%), Positives = 165/311 (53%), Gaps = 21/311 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  L+ E+  S+ TL +YE D +++  F      ++  I    +  Y+++R++++   T
Sbjct: 8   YMDYLKYEKRYSEHTLLNYERDVKEWFSFC-----QREGINEF-EFDYSDVRSYLNDCYT 61

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            ++   ++ R LS ++S+ ++L K K   ++  L M+  KK+ +LP+ L E++   L D+
Sbjct: 62  HQLSRSTMSRKLSSLRSYYQFLLKEKQVKQNPFLIMKGPKKAETLPQFLYEEELQALFDS 121

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +      +T  +  RN A+L LLYG G+R+SE   +    +  +  T+ I GKG K R V
Sbjct: 122 I-----DQTSILGCRNYALLELLYGTGIRVSECCQMKQSQLNVELGTVLIHGKGGKDRYV 176

Query: 201 PLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           P+     +AI  Y       L    NL   + LF    G PL     +  + ++      
Sbjct: 177 PIGEFAVEAIEAYLQRSRPQLLKKSNLETDV-LFLNHLGTPLTERGVRDILSRMTNQTAK 235

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            +    H +RH+FATHLL+NG DLRS+Q +LGH  LS+TQIYT+V+ ++    + + Y  
Sbjct: 236 HIKVAPHMIRHTFATHLLNNGADLRSVQELLGHENLSSTQIYTHVSKEH----LRQAYAL 291

Query: 317 THPSITQKDKK 327
            HP   +KD+K
Sbjct: 292 AHPR-ARKDRK 301


>gi|261405985|ref|YP_003242226.1| integrase family protein [Paenibacillus sp. Y412MC10]
 gi|261282448|gb|ACX64419.1| integrase family protein [Paenibacillus sp. Y412MC10]
          Length = 294

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/301 (32%), Positives = 155/301 (51%), Gaps = 16/301 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            ++Q LE E+GLS+ T+ SY  D + FL   AF  E ++T    R+++ T +  ++ + R
Sbjct: 7   EYVQYLEDEKGLSRSTIASYRADLQGFL---AFAAEREVT--HPREVNRTLLGLYVGRLR 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q     SL R  + ++SF +YL ++ +  +     + N K     P++L  +Q    VD
Sbjct: 62  QQGKAASSLLRCTASLRSFFQYLVRQAVIVQDPTQLLDNPKPERKPPKSLTVEQ----VD 117

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            +L      T    AR+ A+L LLY  G+++SE ++L+  +I  +   LR    G K RI
Sbjct: 118 KLLSAPDSGTPQ-GARDKAMLELLYASGIKVSELVNLSIHDIHLEMRFLRCAVSGGKERI 176

Query: 200 VPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +P+ P   +++  Y  D+    +    +  LF    G  L    F + I++  +  G+  
Sbjct: 177 LPITPIAAESVAFYVRDMRDKLMRDAGEDALFLNSLGTRLTRQGFWKIIKKYGKLAGIDE 236

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             T HTLRHSFA HLL NG DLRS+Q +LGH  LSTT +Y +         M E+YD  H
Sbjct: 237 DITPHTLRHSFAMHLLGNGADLRSVQEMLGHSALSTTGMYQSAKKS-----MKEVYDHYH 291

Query: 319 P 319
           P
Sbjct: 292 P 292


>gi|229545847|ref|ZP_04434572.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           TX1322]
 gi|256853102|ref|ZP_05558472.1| phage integrase [Enterococcus faecalis T8]
 gi|307292019|ref|ZP_07571888.1| tyrosine recombinase XerD [Enterococcus faecalis TX0411]
 gi|229309046|gb|EEN75033.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           TX1322]
 gi|256711561|gb|EEU26599.1| phage integrase [Enterococcus faecalis T8]
 gi|306497017|gb|EFM66565.1| tyrosine recombinase XerD [Enterococcus faecalis TX0411]
 gi|315029408|gb|EFT41340.1| tyrosine recombinase XerD [Enterococcus faecalis TX4000]
          Length = 296

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/299 (32%), Positives = 160/299 (53%), Gaps = 16/299 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L+IERGLS  T +SYE D ++++ FL     ++  + +  ++    I  F+    
Sbjct: 7   DYLHYLQIERGLSNNTRRSYERDLKKYVAFL-----QEQGLHSWDEVDRYMITEFLQSLH 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            ++    S+ R +S ++ F ++L++ +++  + + ++ + KK   LP  L+       VD
Sbjct: 62  EEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKIQKLPSTLS-------VD 114

Query: 140 NV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            V  L+ T   +K +  RN AIL ++Y  GLR+SE + +   ++      L+  GKGDK 
Sbjct: 115 EVTRLIETPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKE 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           RI+PL     + I  Y +     L  N   +  LF    G+PL+     + ++Q+ R   
Sbjct: 175 RIIPLGDYAIQWIERYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQ 234

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           +  + T HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT++  +   D   E +
Sbjct: 235 IEKNITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEYF 293


>gi|160876749|ref|YP_001556065.1| tyrosine recombinase XerD [Shewanella baltica OS195]
 gi|160862271|gb|ABX50805.1| tyrosine recombinase XerD [Shewanella baltica OS195]
          Length = 309

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/300 (34%), Positives = 158/300 (52%), Gaps = 16/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L   +GLS  TL +Y  D R F  + A   ++ +T+ ++ Q    ++RA+++ R  
Sbjct: 23  FLDDLWSNKGLSDNTLSAYRTDLRHFDRYQA---QQGVTLLSVSQ---ADVRAYLAFRVE 76

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     S  R LS ++ F  YL + K  +   +  + + K +  LP +L+E Q    VD 
Sbjct: 77  QDFARTSSARLLSSLRRFYTYLVQTKQISADPMALVESPKLTRHLPDSLSESQ----VDR 132

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +L   + E   ++ R+ A+L LLY  GLR+SE + LT + +   Q  +RI GKG K R+V
Sbjct: 133 LLSEPNVEDA-VECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLV 191

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           PL       +  Y      +L  N Q  + F   RG+ +    F   I+      G+  +
Sbjct: 192 PLGELAITEVESYMKFARQELLGNKQSDVVFPSKRGQMMTRQTFWHRIKLYALRAGIETA 251

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ Q HP
Sbjct: 252 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARAR----LQELHQQHHP 307


>gi|288941805|ref|YP_003444045.1| tyrosine recombinase XerC [Allochromatium vinosum DSM 180]
 gi|288897177|gb|ADC63013.1| tyrosine recombinase XerC [Allochromatium vinosum DSM 180]
          Length = 320

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 158/309 (51%), Gaps = 13/309 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L +L  ER LS+ T+++Y  D  Q  ++LA   E     + I  L    IR + + R
Sbjct: 20  ERFLAHLAHERQLSEHTVRAYRHDLNQIAVWLADQGEP--GAEPIASLDEAGIRRYTAWR 77

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q +  ++L+R LS ++ F ++L +      +  + +R  K    LP   +  Q   L+
Sbjct: 78  HRQGVSGKTLQRELSSLRGFYRWLLRENQAVANPAVGLRAPKSPRKLPHTFDADQLGALL 137

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D V      +   +  R++A++ L Y  GLR++E +S+   +I   +  L + GKG K R
Sbjct: 138 DPV------DEDPLMIRDTAMVELFYSSGLRLAELVSIDLGDIDMSEGELGVIGKGSKSR 191

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            VP+    R+AI E +      L    +  LF  +RG  ++P   ++ + +     G   
Sbjct: 192 RVPVGRKAREAI-ERWLAVRSALADRDERALFVSLRGGRIHPRTVEKRLARWAVERGASR 250

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRHSFA+HLL + GDLR++Q +LGH  + TTQIYT+++ ++    + ++YDQ H
Sbjct: 251 HLHPHLLRHSFASHLLESSGDLRAVQELLGHTDIGTTQIYTHLDFQH----LAQVYDQAH 306

Query: 319 PSITQKDKK 327
           P   +K  K
Sbjct: 307 PRARKKASK 315


>gi|299137337|ref|ZP_07030519.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
 gi|298600742|gb|EFI56898.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
          Length = 317

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 164/317 (51%), Gaps = 23/317 (7%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P I +  LL+E   ++ +L +ERGL  L+ ++Y+   R   +F  F      T+ T RQ 
Sbjct: 6   PTINAASLLRE---YMTHLRVERGLRPLSCEAYQ---RDLEMFAEFLEGANATLLTARQE 59

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           S   +  F+   R   I  RS+ R LS ++ F ++L   K       +N+ +      LP
Sbjct: 60  S---VSGFMQHLREHGIESRSVARKLSCLRGFYRWLLMDKRIPHDPTVNIESPSSWKVLP 116

Query: 127 RALNEKQALTLVDNV-LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           ++L E +   +++   +   S        R+ AIL LLY  GLR+ E +SL  +++  + 
Sbjct: 117 KSLAETEVNEMLERTGVAARSDAADGASLRDHAILELLYAGGLRVGEIVSLRQEDLRLES 176

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGV 242
           ++++++GKGDK RIVP+  S  +A+  Y      +L      +Q  LF  +RG PL    
Sbjct: 177 ASVQVRGKGDKERIVPIGRSAIEALEAYVQRGRPELMRSKSGVQRTLFLSVRGNPLTTQK 236

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             + +R +  +       + H LRHS ATH++ +G DLR++Q++LGH  ++TTQ+YT++ 
Sbjct: 237 VWQMVRSVNSH------ASPHKLRHSCATHMVEHGADLRTVQTLLGHADIATTQVYTHL- 289

Query: 303 SKNGGDWMMEIYDQTHP 319
                D + +++   HP
Sbjct: 290 ---AIDRLKQVHRLHHP 303


>gi|307289082|ref|ZP_07569038.1| tyrosine recombinase XerD [Enterococcus faecalis TX0109]
 gi|306499791|gb|EFM69152.1| tyrosine recombinase XerD [Enterococcus faecalis TX0109]
          Length = 296

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 163/304 (53%), Gaps = 20/304 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L+IERGLS  T +SYE D ++++ FL     ++  + +  ++    I  F+    
Sbjct: 7   DYLHYLQIERGLSNNTRRSYERDLKKYVDFL-----QEQGLHSWDEVDRYMITEFLQSLH 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            ++    S+ R +S ++ F ++L++ +++  + + ++ + KK   LP  L+       VD
Sbjct: 62  EEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLS-------VD 114

Query: 140 NV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            V  L+ T   +K +  RN AIL ++Y  GLR+SE + +   ++      L+  GKGDK 
Sbjct: 115 EVTRLIETPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKE 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           RI+PL     + I  Y +     L  N   +  LF    G+PL+     + ++Q+ R   
Sbjct: 175 RIIPLGDYAIQWIQRYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQ 234

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + T HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT++  +     M ++Y 
Sbjct: 235 IEKNITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQR----MADVYK 290

Query: 316 QTHP 319
           +  P
Sbjct: 291 EHFP 294


>gi|170703226|ref|ZP_02894029.1| tyrosine recombinase XerC [Burkholderia ambifaria IOP40-10]
 gi|170131859|gb|EDT00384.1| tyrosine recombinase XerC [Burkholderia ambifaria IOP40-10]
          Length = 306

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 164/318 (51%), Gaps = 33/318 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L NL+  R LS+ TL++Y  +  +     A         + +  L+  ++R  +++   
Sbjct: 9   YLSNLKHVRQLSEHTLRAYTHELDELKKLAAG--------RPLDTLTAVDMRGAVARAHA 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS+   LS  ++F ++L +R     + +  +R  K+  +LP+AL+   A  L+D 
Sbjct: 61  GGLSARSIAHRLSAWRAFYRWLAQRIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDA 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT----------PQNIMD-DQSTLR 189
            L  T+        R+ AIL L Y  GLR++E + L               +D D++ + 
Sbjct: 121 PLAGTTEGI-----RDHAILELFYSSGLRLAELIGLDVMYTQADGYRSAGWLDLDEAEVT 175

Query: 190 IQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           ++GKG+K R VP+    RKAI  L  +     +   +   PLF  +RG  + PGV +  +
Sbjct: 176 VRGKGNKERKVPV---GRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMAPGVVRERV 232

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  +S TQ+YT+++ ++  
Sbjct: 233 KRAALTAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYTSLDFQH-- 290

Query: 308 DWMMEIYDQTHPSITQKD 325
             + +IYD  HP   ++D
Sbjct: 291 --LAKIYDSAHPRAKKRD 306


>gi|254468110|ref|ZP_05081516.1| tyrosine recombinase XerD [beta proteobacterium KB13]
 gi|207086920|gb|EDZ64203.1| tyrosine recombinase XerD [beta proteobacterium KB13]
          Length = 298

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/300 (33%), Positives = 157/300 (52%), Gaps = 19/300 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++ +L +E GLSK TL SY  D +Q  I+ +      IT   I++  Y   R  +SK   
Sbjct: 15  FINSLWLEDGLSKNTLDSYRYDLKQLAIWYSNRDIAHITKSEIQE--YLAYRFPLSK--- 69

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                RS+ R L+ ++ F +YL +  I  E   L +   K S +LP++LNE +       
Sbjct: 70  ----SRSIARLLACLRRFYRYLVRENIIHEDPTLMIEAPKPSKALPKSLNENEV-----E 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL+  + +     R+ A+L LLY CGLR+SE +++    +  +   +RI GKGDK R+V
Sbjct: 121 KLLNAPNISDDQGLRDRAMLELLYACGLRVSELITIMVTEVSLNDGVIRITGKGDKTRLV 180

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+       I +Y      +L    +   LF  +RG  +    F   I++     G+  +
Sbjct: 181 PMGEEASHWIEQYLKSSRDNLLKEKKSKYLFVTLRGAAMTRQAFWYLIKRYAVASGIKHA 240

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + H LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     + +++ + HP
Sbjct: 241 ISPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARER----LKDLHQKHHP 296


>gi|325982877|ref|YP_004295279.1| tyrosine recombinase XerC [Nitrosomonas sp. AL212]
 gi|325532396|gb|ADZ27117.1| tyrosine recombinase XerC [Nitrosomonas sp. AL212]
          Length = 297

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 156/313 (49%), Gaps = 35/313 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++ +L  ER LS LT +SY  D R  L        E +    + Q+    IR  I++   
Sbjct: 12  YIDHLAYERRLSPLTCKSYARDIRVLL--------EHLGTDDLAQVQSPNIRQAIAQLHG 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL--- 137
           + +G RSL R LS    F  +L ++     +    +R  K    LP AL+  +A  L   
Sbjct: 64  KGLGGRSLARMLSAWCGFYNFLIRKHGFQHNPCYAVRVPKSPQKLPHALSPDEATRLLQF 123

Query: 138 -VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
            V+N+LL          AR+SA+  L Y  GLR++E   L P+++   + T+R+ GKG K
Sbjct: 124 PVENILL----------ARDSAMFELFYSSGLRLAELTHLRPEDVHFAEGTIRVLGKGGK 173

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRR 252
            RIVP+      +I  +       L L I  P    LF   RG  ++       ++   R
Sbjct: 174 ARIVPVGEYALHSITTW-----LALRLQIIKPNVTALFLSRRGDAISMRAIAYRLKSRAR 228

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL  +   H LRHSFA+H+L + GDLR++Q +LGH  +++TQ+YT+++ ++    + +
Sbjct: 229 QQGLHQNVHPHVLRHSFASHVLQSSGDLRAVQEMLGHAHITSTQVYTHLDFQH----LAK 284

Query: 313 IYDQTHPSITQKD 325
           IYD  HP   +++
Sbjct: 285 IYDAAHPRAKKRN 297


>gi|56461653|ref|YP_156934.1| site-specific recombinase XerC [Idiomarina loihiensis L2TR]
 gi|56180663|gb|AAV83385.1| Site-specific recombinase XerC [Idiomarina loihiensis L2TR]
          Length = 300

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 158/308 (51%), Gaps = 17/308 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +Q W+Q L+ ERGL++LTL++Y     Q LI       E   I   + L    I   +  
Sbjct: 7   QQKWMQQLQGERGLAELTLKNY-----QRLIAADLTALELQKITEPKALRVPVIERLLVG 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R   +G+RS+   LS  ++F +++ +     ++  +++   K    LP+ L+       
Sbjct: 62  WRRNGLGERSIALKLSAWRTFCQFMVESNAMDDNPAMSVSAPKIPKRLPKNLD------- 114

Query: 138 VDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           VD++       T    A R++A++ LLY  G+R++E +SL   +I      LR+ GKG K
Sbjct: 115 VDSISHLLDLPTDDDLAIRDAAMMELLYASGIRLAELVSLDLDHIDHRMMQLRVTGKGSK 174

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            RIVP      KA+ ++  +    LN   +L LF   R + ++P   Q+ +    +  G+
Sbjct: 175 TRIVPFGRCAEKALKKWLSVRQAWLNQKPELALFVSKRLQRISPRTVQQRLNYWGKQQGV 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRHSFA+H+L + GDLR++Q +LGH  LSTTQ+YT+++ K     +  +YD 
Sbjct: 235 VGDLHPHKLRHSFASHMLESSGDLRAVQEMLGHANLSTTQVYTHLDFKR----LASVYDS 290

Query: 317 THPSITQK 324
            HP   +K
Sbjct: 291 AHPRARKK 298


>gi|205373757|ref|ZP_03226559.1| site-specific tyrosine recombinase XerD [Bacillus coahuilensis
           m4-4]
          Length = 297

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/303 (33%), Positives = 158/303 (52%), Gaps = 15/303 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  L+IERGLS  TL SYE D + +   L   TE+   I+ +  +    I  F++  
Sbjct: 6   KDFLHFLQIERGLSSNTLVSYERDLKSYCNHLK-NTEQ---IEDLNHVVRGNIIEFLAFL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + Q    +++ R ++ I+SF ++L + KIT     +++   K   SLP+ L+  +  TL+
Sbjct: 62  KDQGKSSKTIARHIASIRSFHQFLLREKITDHDPTVHIDTPKAERSLPKVLSLDEVETLL 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D+  L      K    R+ A+L +LY  G+R+SE + L  +++      +R  GKG+K R
Sbjct: 122 DSPNLQ-----KPSGIRDKAMLEILYATGIRVSELIELNLEDVHLTMGFVRCIGKGNKER 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           I+PL       + EY +     L  +      LF    G  L    F + ++ L     +
Sbjct: 177 IIPLGNHAITILKEYLEKARPKLRSSKYRTDALFLNHHGNRLTRQGFWKILKGLATKANI 236

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        + E+Y +
Sbjct: 237 QKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----LKEVYSK 292

Query: 317 THP 319
            HP
Sbjct: 293 FHP 295


>gi|107024018|ref|YP_622345.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia
           AU 1054]
 gi|116691105|ref|YP_836728.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia
           HI2424]
 gi|105894207|gb|ABF77372.1| Tyrosine recombinase XerC [Burkholderia cenocepacia AU 1054]
 gi|116649194|gb|ABK09835.1| tyrosine recombinase XerC [Burkholderia cenocepacia HI2424]
          Length = 306

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 160/316 (50%), Gaps = 29/316 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L NL+  R LS+ TL++Y  +  +     A    E +T          ++R  + +   
Sbjct: 9   YLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLEALTA--------ADMRGAVVRGHA 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS+   LS  ++F ++  +R     + +  +R  K+  SLP+AL+   A+ L+D 
Sbjct: 61  AGLSARSISHRLSAWRAFYRWFAQRVEMPANPVAGVRAPKREKSLPKALSVDDAVALMDA 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTLR 189
            L  T+        R+ AIL L Y  GLR++E + L  +    D           ++ + 
Sbjct: 121 PLAGTTESI-----RDHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLAEAEVT 175

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           ++GKG+K R VP+      A+  +  +    +  +   PLF  +RG  ++PGV +  +++
Sbjct: 176 VRGKGNKERKVPVGSKAIDALNAWLAVRDEFVKHDPH-PLFVSVRGNRMSPGVVRERVKR 234

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+P +   H LRHSFATH+L + GDLR++Q +LGH  ++ TQIYT+++ ++    
Sbjct: 235 AALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQH---- 290

Query: 310 MMEIYDQTHPSITQKD 325
           + +IYD  HP   ++D
Sbjct: 291 LAKIYDSAHPRAKKRD 306


>gi|289177291|gb|ADC84537.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium animalis
           subsp. lactis BB-12]
          Length = 309

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 151/304 (49%), Gaps = 16/304 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L ++++ERGLS  T+Q+YE D  Q++ +L      +  I     ++  ++  F++ +  
Sbjct: 14  FLAHIDVERGLSAATVQAYENDIDQYVRWLG-----EQGIAKAASITSNDVEDFVAAQSK 68

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                 SL R L+ I  F ++++  ++  +    ++R  K + +LP  L   +   L+D 
Sbjct: 69  SGTSAVSLARRLASIHMFHRFMQSERVVADDVSQSVRPPKSAETLPEVLTVDEVQRLLDA 128

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                + E   +  R+SA+L L+Y  G R+SEA+ L   ++  D   +R+ GKG K R+V
Sbjct: 129 ARHDDASEA--VSMRDSALLELMYATGCRVSEAVGLDFTDVDMDAQVVRLTGKGAKQRLV 186

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQ-----LPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           P       A+  Y +    +L    +       +F   RGK L        I+       
Sbjct: 187 PFGTYAANALRAYVEHARPELENKAKGERERSAIFLNKRGKRLTRQSVWEIIKHAGALAH 246

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +      HTLRHSFATH+L  G D+R++Q +LGH  + TTQ+YT+V+     D ++E Y 
Sbjct: 247 VSKPLHPHTLRHSFATHMLQGGADVRTVQELLGHASVKTTQMYTHVSQ----DTLIETYI 302

Query: 316 QTHP 319
            +HP
Sbjct: 303 TSHP 306


>gi|229019302|ref|ZP_04176128.1| Tyrosine recombinase xerD [Bacillus cereus AH1273]
 gi|229025548|ref|ZP_04181956.1| Tyrosine recombinase xerD [Bacillus cereus AH1272]
 gi|228735730|gb|EEL86317.1| Tyrosine recombinase xerD [Bacillus cereus AH1272]
 gi|228741987|gb|EEL92161.1| Tyrosine recombinase xerD [Bacillus cereus AH1273]
          Length = 296

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 160/304 (52%), Gaps = 18/304 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  + +E+GL+K T+ SYE D + ++ +L    + K    T  +++   I  F+   
Sbjct: 6   KDFIHYMIVEKGLAKNTVVSYERDLKSYVKYLQNVEQTK----TFHEVTRIHIVNFLQYL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +      ++L R ++ I+SF ++L + +       +++   +    LP+ L+       +
Sbjct: 62  KENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLS-------I 114

Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           D V  LL T         R+ A+L LLY  GLR+SE ++L  +++      +R  GKG+K
Sbjct: 115 DEVEALLQTPKAVSAFGIRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNK 174

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            RI+PL     +AI +Y +    +L     +  LF    G  L+   F + +++L +   
Sbjct: 175 ERIIPLGSLATEAIQKYIEKGRRELMGKKAVDALFLNHHGNRLSRQGFWKILKRLAKEAN 234

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + ++Y 
Sbjct: 235 IEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKAR----LKDVYK 290

Query: 316 QTHP 319
           Q HP
Sbjct: 291 QFHP 294


>gi|328955348|ref|YP_004372681.1| integrase family protein [Coriobacterium glomerans PW2]
 gi|328455672|gb|AEB06866.1| integrase family protein [Coriobacterium glomerans PW2]
          Length = 314

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 155/312 (49%), Gaps = 20/312 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ++ +   ++L  L +ERGLS+ T+  Y    R    ++AF  +E I    +  +   ++ 
Sbjct: 14  QIARAADSYLSYLSVERGLSENTIAGYR---RDLSSYIAFLLDEGI--DRLDGIDRADVE 68

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           AF+  +R       S++R+LS +K F ++  +  +T      ++R  ++ + LP  ++ +
Sbjct: 69  AFVCAKRDGGYSSASIERALSAVKGFHRFAIREGLTETHPTASLRLPRREDRLPAVISIE 128

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           QA  L+D     T+       AR+ A L +LYGCGLR+SE + L  +++  D+  L   G
Sbjct: 129 QARALLDQPFAPTA-----AGARDRATLEVLYGCGLRVSELIGLDVRDLHLDEEFLHALG 183

Query: 193 KGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           KG K R+VP+  +   A+  Y      +L       +    +     G  L+        
Sbjct: 184 KGSKERLVPITGTAAAAMEAYMSGPRSELAAHARRASPSPAVLLNKNGGRLSRQAVHACC 243

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +  R  G+      HTLRHSFATH+L+ G DLR +Q ILGH  ++TTQ+YT+++     
Sbjct: 244 ERWGRIAGID-GLHPHTLRHSFATHMLAGGADLRVLQEILGHASITTTQLYTHLDRAQ-- 300

Query: 308 DWMMEIYDQTHP 319
             + EIY   HP
Sbjct: 301 --ITEIYLGAHP 310


>gi|315268949|gb|ADT95802.1| tyrosine recombinase XerD [Shewanella baltica OS678]
          Length = 300

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/300 (34%), Positives = 158/300 (52%), Gaps = 16/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L   +GLS  TL +Y  D R F  + A   ++ +T+ ++ Q    ++RA+++ R  
Sbjct: 14  FLDDLWSNKGLSDNTLSAYRTDLRHFDRYQA---QQGVTLLSVSQ---ADVRAYLAFRVE 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     S  R LS ++ F  YL + K  +   +  + + K +  LP +L+E Q    VD 
Sbjct: 68  QDFARTSSARLLSSLRRFYTYLVQTKQISADPMALVESPKLTRHLPDSLSESQ----VDR 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +L   + E   ++ R+ A+L LLY  GLR+SE + LT + +   Q  +RI GKG K R+V
Sbjct: 124 LLSEPNVEDA-VECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLV 182

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           PL       +  Y      +L  N Q  + F   RG+ +    F   I+      G+  +
Sbjct: 183 PLGELAITEVESYMKFARQELLGNKQSDVVFPSKRGQMMTRQTFWHRIKLYALRAGIETA 242

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ Q HP
Sbjct: 243 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARAR----LQELHQQHHP 298


>gi|153002033|ref|YP_001367714.1| tyrosine recombinase XerD [Shewanella baltica OS185]
 gi|151366651|gb|ABS09651.1| tyrosine recombinase XerD [Shewanella baltica OS185]
          Length = 309

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/300 (34%), Positives = 157/300 (52%), Gaps = 16/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L   +GLS  TL +Y  D R F  + A   ++ +T+  + Q    ++RA+++ R  
Sbjct: 23  FLDDLWSNKGLSDNTLSAYRTDLRHFDRYQA---QQGVTLLAVSQ---ADVRAYLAFRVE 76

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     S  R LS ++ F  YL + K  +   +  + + K +  LP +L+E Q    VD 
Sbjct: 77  QDFARTSSARLLSSLRRFYTYLVQTKQISADPMALVESPKLTRHLPDSLSESQ----VDR 132

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +L   + E   ++ R+ A+L LLY  GLR+SE + LT + +   Q  +RI GKG K R+V
Sbjct: 133 LLSEPNVEDA-VECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLV 191

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           PL       +  Y      +L  N Q  + F   RG+ +    F   I+      G+  +
Sbjct: 192 PLGELAITEVESYMKFARQELLGNKQSDVVFPSKRGQMMTRQTFWHRIKLYALRAGIETA 251

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ Q HP
Sbjct: 252 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARAR----LQELHQQHHP 307


>gi|297570024|ref|YP_003691368.1| tyrosine recombinase XerD [Desulfurivibrio alkaliphilus AHT2]
 gi|296925939|gb|ADH86749.1| tyrosine recombinase XerD [Desulfurivibrio alkaliphilus AHT2]
          Length = 356

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/323 (30%), Positives = 157/323 (48%), Gaps = 33/323 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT--------------------- 59
           +LQ L  ER L+  TL +Y+ D   F  FLA  T                          
Sbjct: 41  FLQYLAAERRLATNTLAAYQSDLLSFFAFLARATAPVAATVDAGATGTAGKDRGAGLASA 100

Query: 60  --IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
             I  I Q+    +RA+++  R +K   RS  R +S +++F ++L+  ++        + 
Sbjct: 101 RPITEINQIGPEHLRAYLAACRQEKAAPRSTSRRISALRAFFRFLQGEQLLGHDPAALLD 160

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             K   +LP+ L+  +    V+ +L   +     +  RN A+L+LLY  G+R+SE + L 
Sbjct: 161 LPKIGRALPKVLSSAE----VEQLLAPPAPPASILALRNHAMLHLLYATGMRVSELVKL- 215

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGK 236
           P   ++    LRI GKG K R+VP   + R+A+  Y     P  L       LF   RG 
Sbjct: 216 PVAAVNQAGHLRILGKGSKERLVPFGEAARQAMAVYITQARPRLLKKRRSDFLFVTGRGT 275

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            +    F + +R+  R  G+    + H LRHSFATHLL +G DLR++Q +LGH  ++TTQ
Sbjct: 276 AMTRLRFWQIVRKSARERGIAREISPHVLRHSFATHLLEHGADLRAVQVMLGHADIATTQ 335

Query: 297 IYTNVNSKNGGDWMMEIYDQTHP 319
           IYT+V++    + +  I+ + HP
Sbjct: 336 IYTHVDT----NRLKAIHRKFHP 354


>gi|304410563|ref|ZP_07392181.1| tyrosine recombinase XerD [Shewanella baltica OS183]
 gi|307304656|ref|ZP_07584406.1| tyrosine recombinase XerD [Shewanella baltica BA175]
 gi|304351047|gb|EFM15447.1| tyrosine recombinase XerD [Shewanella baltica OS183]
 gi|306912058|gb|EFN42482.1| tyrosine recombinase XerD [Shewanella baltica BA175]
          Length = 300

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/300 (34%), Positives = 157/300 (52%), Gaps = 16/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L   +GLS  TL +Y  D R F  + A   ++ +T+  + Q    ++RA+++ R  
Sbjct: 14  FLDDLWSSKGLSDNTLSAYRTDLRHFDRYQA---QQGVTLLAVSQ---ADVRAYLAFRVE 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     S  R LS ++ F  YL + K  +   +  + + K +  LP +L+E Q    VD 
Sbjct: 68  QDFARTSSARLLSSLRRFYTYLVQTKQISADPMALVESPKLTRHLPDSLSESQ----VDR 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +L   + E   ++ R+ A+L LLY  GLR+SE + LT + +   Q  +RI GKG K R+V
Sbjct: 124 LLSEPNVEDA-VECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLV 182

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           PL       +  Y      +L  N Q  + F   RG+ +    F   I+      G+  +
Sbjct: 183 PLGELAITEVESYMKFARQELLGNKQSDVVFPSKRGQMMTRQTFWHRIKLYALRAGIETA 242

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ Q HP
Sbjct: 243 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARAR----LQELHQQHHP 298


>gi|264680261|ref|YP_003280171.1| phage integrase [Comamonas testosteroni CNB-2]
 gi|262210777|gb|ACY34875.1| phage integrase [Comamonas testosteroni CNB-2]
          Length = 348

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/332 (29%), Positives = 161/332 (48%), Gaps = 38/332 (11%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
            LPE+V         ++L+++ +++ L++ T   Y  D  +   F     +E +T+Q   
Sbjct: 15  QLPEVV--------HSYLEHVRVQKRLAERTHTLYALDLIKLQSFAQAAAQELLTLQP-- 64

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
               + IR F ++        R +   LSG +SF ++  +R++   + +  +R  K +  
Sbjct: 65  ----SHIRRFAAQMHGAGRSARGIALILSGWRSFFRWAAQRELVPFNPVEGVRGPKAAKP 120

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQN-- 180
           LP+AL    A+ L      H      W++AR+ A+  LLY CGLR++E   L L P    
Sbjct: 121 LPKALAVDDAVQLAS---FHNPEADPWMEARDVAMTELLYSCGLRVAELVGLDLRPDQQS 177

Query: 181 -------IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL------ 227
                  I  +     +QGKG K RIVP+     +A+  +  L    L    QL      
Sbjct: 178 RHEGRGWIDLEAGDAHVQGKGSKRRIVPVGRMAIEALQRWLALRSSALVGTAQLKAQDEA 237

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
            LF G RG+ L+       ++Q  +  GL      H LRHSFA+H+L + GDLR++Q +L
Sbjct: 238 ALFVGRRGERLSAQSVWSRLKQRGQQAGLATGVHPHVLRHSFASHMLQSSGDLRAVQELL 297

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           GH  ++TTQIYT ++ ++    + + Y++ HP
Sbjct: 298 GHSSIATTQIYTRLDFQH----LAQAYEKAHP 325


>gi|229592394|ref|YP_002874513.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens
           SBW25]
 gi|229364260|emb|CAY51975.1| integrase/recombinase [Pseudomonas fluorescens SBW25]
          Length = 298

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 157/308 (50%), Gaps = 32/308 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKRR 79
           +L  L +E+GLS  T Q+Y  D     +F  +  E+ +  I   R+L    I   ++ R 
Sbjct: 12  FLDALWLEKGLSDNTRQAYRSD---LALFNGWLQEKNLELINAGREL----ILDHLAWRL 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q    RS  R LSG++ F +YL + K+      L +   +    LP++L+E        
Sbjct: 65  EQNYKPRSTARFLSGVRGFYRYLLREKLIALDPTLQVEMPQLGRPLPKSLSEADV----- 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           + LL     ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K R+
Sbjct: 120 DALLAAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179

Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           VP+           +R A  E     P D+       LF  +RG+ +    F   I+   
Sbjct: 180 VPMGEEAIVWVERYMRDARGELLGGRPSDV-------LFPSLRGEQMTRQTFWHRIKHQA 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +  G+  + + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + 
Sbjct: 233 KVAGIGKALSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288

Query: 312 EIYDQTHP 319
           +++ + HP
Sbjct: 289 DMHAKHHP 296


>gi|229168834|ref|ZP_04296553.1| Tyrosine recombinase xerD [Bacillus cereus AH621]
 gi|228614682|gb|EEK71788.1| Tyrosine recombinase xerD [Bacillus cereus AH621]
          Length = 296

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 160/304 (52%), Gaps = 18/304 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  + +E+GL+K T+ SYE D + ++ +L    + K    T  +++   I  F+   
Sbjct: 6   KDFIHYMIVEKGLAKNTVVSYERDLKSYVKYLQNVEQTK----TFHEVTRLHIVNFLQHL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +      ++L R ++ I+SF ++L + +       +++   +    LP+ L+       +
Sbjct: 62  KENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLS-------I 114

Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           D V  LL T         R+ A+L LLY  GLR+SE ++L  +++      +R  GKG+K
Sbjct: 115 DEVEALLQTPKTASAFGIRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNK 174

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            RI+PL     +AI +Y +    +L     +  LF    G  L+   F + +++L +   
Sbjct: 175 ERIIPLGSLATEAIQKYIEKGRRELMGKKAVDALFLNHHGNRLSRQGFWKILKRLAKEAN 234

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + ++Y 
Sbjct: 235 IAKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKAR----LKDVYK 290

Query: 316 QTHP 319
           Q HP
Sbjct: 291 QFHP 294


>gi|53802409|ref|YP_112927.1| tyrosine recombinase XerD [Methylococcus capsulatus str. Bath]
 gi|53756170|gb|AAU90461.1| tyrosine recombinase XerD [Methylococcus capsulatus str. Bath]
          Length = 309

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/303 (34%), Positives = 159/303 (52%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++++L +E GLS  TL++Y  D R F  +LA     ++T      L+  +I A++  R
Sbjct: 20  QRFVESLWVEEGLSPHTLKAYGSDLRLFAAWLATNRCAELT-----ALTGEDIEAYLGWR 74

Query: 79  RTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            ++K   R+  R LS I+ F  Y L++ +IT +   L +   K    LP  L E +    
Sbjct: 75  HSRKSKSRTSARVLSSIRHFCAYRLRRGEITGDPCAL-IAPPKLGRFLPDTLTESE---- 129

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           V+ +L     +T  +  R+ A+L +LY  GLR+SE + L+   I   Q  +RI GKGDK 
Sbjct: 130 VEALLAAPDVDTP-LGFRDRAMLEMLYATGLRVSELVGLSFGQISLRQGVVRISGKGDKD 188

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y D + P  L       LF   RG  +    F   I++     G+
Sbjct: 189 RLVPVGEEALDWLERYLDKVRPVTLKGRQSDFLFVTDRGGAMTRQAFWHLIKRYAGQAGI 248

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V  +     + E++ +
Sbjct: 249 SKPLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQER----LKELHTR 304

Query: 317 THP 319
            HP
Sbjct: 305 FHP 307


>gi|82751090|ref|YP_416831.1| site-specific recombinase [Staphylococcus aureus RF122]
 gi|82656621|emb|CAI81047.1| site-specific recombinase [Staphylococcus aureus RF122]
          Length = 295

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/304 (33%), Positives = 167/304 (54%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTI-RQLSYTEIRAFIS 76
           + +L+ ++IE+GLS  T+ +Y  D +++  ++   TE  I+ I  I RQL    +   I 
Sbjct: 6   EEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYM---TEHHISHIDFIDRQLIQECLGHLID 62

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           + ++ K    S+ R +S I+SF ++  + K   +   + + + K    LP  LN  + L 
Sbjct: 63  QGQSAK----SIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLA 118

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L++ + L+     K    R+  +L LLY  G+R+SE + L  +N+      +R+ GKGDK
Sbjct: 119 LLETLDLN-----KINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDK 173

Query: 197 IRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            RIVPL  +V + +  Y + + P  L   +   LF  + GKPL+     + I+Q      
Sbjct: 174 ERIVPLGDAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKAN 233

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y+
Sbjct: 234 IKKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYN 289

Query: 316 QTHP 319
           Q HP
Sbjct: 290 QFHP 293


>gi|183602465|ref|ZP_02963831.1| probable integrase/recombinase [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219683221|ref|YP_002469604.1| tyrosine recombinase XerD [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241191181|ref|YP_002968575.1| Integrase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196587|ref|YP_002970142.1| Integrase [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183218384|gb|EDT89029.1| probable integrase/recombinase [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219620871|gb|ACL29028.1| tyrosine recombinase XerD [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240249573|gb|ACS46513.1| Integrase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240251141|gb|ACS48080.1| Integrase [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|295794174|gb|ADG33709.1| Integrase [Bifidobacterium animalis subsp. lactis V9]
          Length = 307

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 151/304 (49%), Gaps = 16/304 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L ++++ERGLS  T+Q+YE D  Q++ +L      +  I     ++  ++  F++ +  
Sbjct: 12  FLAHIDVERGLSAATVQAYENDIDQYVRWLG-----EQGIAKAASITSNDVEDFVAAQSK 66

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                 SL R L+ I  F ++++  ++  +    ++R  K + +LP  L   +   L+D 
Sbjct: 67  SGTSAVSLARRLASIHMFHRFMQSERVVADDVSQSVRPPKSAETLPEVLTVDEVQRLLDA 126

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                + E   +  R+SA+L L+Y  G R+SEA+ L   ++  D   +R+ GKG K R+V
Sbjct: 127 ARHDDASEA--VSMRDSALLELMYATGCRVSEAVGLDFTDVDMDAQVVRLTGKGAKQRLV 184

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQ-----LPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           P       A+  Y +    +L    +       +F   RGK L        I+       
Sbjct: 185 PFGTYAANALRAYVEHARPELENKAKGERERSAIFLNKRGKRLTRQSVWEIIKHAGALAH 244

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +      HTLRHSFATH+L  G D+R++Q +LGH  + TTQ+YT+V+     D ++E Y 
Sbjct: 245 VSKPLHPHTLRHSFATHMLQGGADVRTVQELLGHASVKTTQMYTHVSQ----DTLIETYI 300

Query: 316 QTHP 319
            +HP
Sbjct: 301 TSHP 304


>gi|134297261|ref|YP_001120996.1| site-specific tyrosine recombinase XerC [Burkholderia vietnamiensis
           G4]
 gi|134140418|gb|ABO56161.1| tyrosine recombinase XerC [Burkholderia vietnamiensis G4]
          Length = 306

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 161/318 (50%), Gaps = 33/318 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L NL+  R LS+ TL+ Y  +  +     A         + +  L+ T++R  +++   
Sbjct: 9   YLSNLKHVRQLSEHTLRGYTHELDELKKLAAG--------RPLETLTATDVRGAVARAHA 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS+   LS  ++F ++L  R     + +  +R  K+  +LP+AL+   A  L+D 
Sbjct: 61  GGLSARSISHRLSAWRAFYRWLALRIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDA 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTLR 189
            L  T+        R+ AIL L Y  GLR++E + L       D           ++ + 
Sbjct: 121 PLPDTTEGI-----RDHAILELFYSSGLRLAELVGLDAMYTQADGYRSAGWLDLAEAEVT 175

Query: 190 IQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           ++GKG+K R VP+    RKAI  L  +     +   +   PLF  +RG  + PGV +  +
Sbjct: 176 VRGKGNKERKVPV---GRKAIAALNAWLAVRGEFVKHDPHPLFLSVRGNRMAPGVVRERV 232

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  ++ TQIYT+++ ++  
Sbjct: 233 KRAALSAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQH-- 290

Query: 308 DWMMEIYDQTHPSITQKD 325
             + +IYD  HP   ++D
Sbjct: 291 --LAKIYDSAHPRAKKRD 306


>gi|253732140|ref|ZP_04866305.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724095|gb|EES92824.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 295

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 164/304 (53%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTI-RQLSYTEIRAFIS 76
           + +L+ ++IE+GLS  T+ +Y  D +++  ++   TE  I+ I  I RQL    +   I 
Sbjct: 6   EEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYM---TEHHISHIDFIDRQLIQECLGHLID 62

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           + ++ K    S+ R +S I+SF ++  + K   +   + + + K    LP  LN  + L 
Sbjct: 63  QGQSAK----SIARFISTIRSFHQFAIREKYAVKDPTVLLDSPKYDKKLPDVLNVDEVLA 118

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L     L T    K    R+  +L LLY  G+R+SE + L  +N+      +R+ GKGDK
Sbjct: 119 L-----LETPDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDK 173

Query: 197 IRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            RIVPL  +V + +  Y + + P  L   +   LF  + GKPL+     + I+Q      
Sbjct: 174 ERIVPLGDAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKAN 233

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y+
Sbjct: 234 IKKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYN 289

Query: 316 QTHP 319
           Q HP
Sbjct: 290 QFHP 293


>gi|295428073|ref|ZP_06820705.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|295128431|gb|EFG58065.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           EMRSA16]
          Length = 297

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 164/304 (53%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTI-RQLSYTEIRAFIS 76
           + +L+ ++IE+GLS  T+ +Y  D +++  ++   TE  I+ I  I RQL    +   I 
Sbjct: 8   EEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYM---TEHHISHIDFIDRQLIQECLGHLID 64

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           + ++ K    S+ R +S I+SF ++  + K   +   + + + K    LP  LN  + L 
Sbjct: 65  QGQSAK----SIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLA 120

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L     L T    K    R+  +L LLY  G+R+SE + L  +N+      +R+ GKGDK
Sbjct: 121 L-----LETPDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDK 175

Query: 197 IRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            RIVPL  +V + +  Y + + P  L   +   LF  + GKPL+     + I+Q      
Sbjct: 176 ERIVPLGDAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKAN 235

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y+
Sbjct: 236 IKKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYN 291

Query: 316 QTHP 319
           Q HP
Sbjct: 292 QFHP 295


>gi|194367246|ref|YP_002029856.1| site-specific tyrosine recombinase XerC [Stenotrophomonas
           maltophilia R551-3]
 gi|194350050|gb|ACF53173.1| tyrosine recombinase XerC [Stenotrophomonas maltophilia R551-3]
          Length = 296

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 161/310 (51%), Gaps = 21/310 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +LQ+L++ER +S  TL +Y  D    L  L+ + E +     +  L    +R F++  
Sbjct: 5   QAFLQHLQVERRMSAHTLDAYRRD----LDALSVWAEPRGM--AVEALDAETLRQFVADE 58

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +  +SL+R LS  +SF  +L K      +    ++  +    LP+ L+  +A+ LV
Sbjct: 59  HRRGLSAKSLQRRLSACRSFYAWLLKHGRIEVNPAATLKAPRAPRRLPQVLDADEAVQLV 118

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +   L    E   +  R+ A+L L Y  GLR+SE  +LT +++      + + GKG++ R
Sbjct: 119 E---LEPEGE---LGRRDRALLELFYSSGLRLSEVCALTWRDLDFASGLVNVMGKGNRQR 172

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            VP     R+A+  +      +      +P+F G R  P++    Q  IRQL +  GL  
Sbjct: 173 RVPFGRPAREALQAWR----AESGGGPAMPVFPG-RNGPISQRAVQIRIRQLAQRQGLFK 227

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRHSFA+H+L + GDLR +Q +LGH  ++TTQIYT+++ ++    + ++YD  H
Sbjct: 228 HVHPHMLRHSFASHILESSGDLRGVQELLGHADIATTQIYTHLDFQH----LAKVYDAAH 283

Query: 319 PSITQKDKKN 328
           P   ++ K +
Sbjct: 284 PRAKRRSKDD 293


>gi|206558906|ref|YP_002229666.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia
           J2315]
 gi|198034943|emb|CAR50815.1| tyrosine recombinase XerC [Burkholderia cenocepacia J2315]
          Length = 306

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 163/318 (51%), Gaps = 33/318 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L NL+  R LS+ TL++Y  +  +     A         + +  L+  ++R  +++   
Sbjct: 9   YLSNLKHVRQLSEHTLRAYTHELDELKKLAAG--------RPLDALTAADMRGAVARAHA 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS+   LS  ++F ++L +R     + +  +R  K+  +LP+AL+   A  L+D 
Sbjct: 61  GGLSARSISHRLSAWRAFYRWLAQRIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDA 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTLR 189
            L  T+        R+ AIL L Y  GLR++E + L       D           ++ + 
Sbjct: 121 PLAGTTEGI-----RDHAILELFYSSGLRLAELIGLDVTYTQADGYRSAGWLDLAEAEVT 175

Query: 190 IQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           ++GKG+K R VP+    RKAI  L  +     +   +   PLF  +RG  ++PGV +  +
Sbjct: 176 VRGKGNKERKVPV---GRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMSPGVVRERV 232

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  ++ TQ+YT+++ ++  
Sbjct: 233 KRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYTSLDFQH-- 290

Query: 308 DWMMEIYDQTHPSITQKD 325
             + +IYD  HP   ++D
Sbjct: 291 --LAKIYDSAHPRAKKRD 306


>gi|170734437|ref|YP_001766384.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia
           MC0-3]
 gi|169817679|gb|ACA92262.1| tyrosine recombinase XerC [Burkholderia cenocepacia MC0-3]
          Length = 306

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 161/318 (50%), Gaps = 33/318 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L NL+  R LS+ TL++Y  +  +     A    E +T          ++R  + +   
Sbjct: 9   YLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLEALTA--------ADMRGAVVRGHA 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS+   LS  ++F ++  +R     + +  +R  K+  SLP+AL+   A+ L+D 
Sbjct: 61  AGLSARSISHRLSAWRAFYRWFAQRVEMPANPVAGVRAPKREKSLPKALSVDDAVALMDA 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTLR 189
            L  T+        R+ AIL L Y  GLR++E + L  +    D           ++ + 
Sbjct: 121 PLAGTTEGI-----RDHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLAEAEVT 175

Query: 190 IQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           ++GKG+K R VP+     KAI  L  +     +   +   PLF  +RG  ++PGV +  +
Sbjct: 176 VRGKGNKERKVPV---GSKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMSPGVVRERV 232

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  ++ TQIYT+++ ++  
Sbjct: 233 KRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQH-- 290

Query: 308 DWMMEIYDQTHPSITQKD 325
             + +IYD  HP   ++D
Sbjct: 291 --LAKIYDSAHPRAKKRD 306


>gi|15924487|ref|NP_372021.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927078|ref|NP_374611.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           N315]
 gi|21283180|ref|NP_646268.1| site-specific recombinase [Staphylococcus aureus subsp. aureus MW2]
 gi|49483747|ref|YP_040971.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49486335|ref|YP_043556.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57650453|ref|YP_186382.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus COL]
 gi|87160007|ref|YP_494143.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195302|ref|YP_500106.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|148267981|ref|YP_001246924.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus JH9]
 gi|150394046|ref|YP_001316721.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus JH1]
 gi|151221617|ref|YP_001332439.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156979816|ref|YP_001442075.1| site-specific recombinase [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509725|ref|YP_001575384.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221140082|ref|ZP_03564575.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|253314865|ref|ZP_04838078.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253733255|ref|ZP_04867420.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255006283|ref|ZP_05144884.2| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257425620|ref|ZP_05602044.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428281|ref|ZP_05604679.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430918|ref|ZP_05607298.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433607|ref|ZP_05609965.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436520|ref|ZP_05612564.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           M876]
 gi|257793574|ref|ZP_05642553.1| tyrosine recombinase XerD [Staphylococcus aureus A9781]
 gi|258411126|ref|ZP_05681406.1| tyrosine recombinase xerD [Staphylococcus aureus A9763]
 gi|258419910|ref|ZP_05682871.1| tyrosine recombinase XerD [Staphylococcus aureus A9719]
 gi|258423151|ref|ZP_05686044.1| tyrosine recombinase XerD [Staphylococcus aureus A9635]
 gi|258437328|ref|ZP_05689312.1| tyrosine recombinase xerD [Staphylococcus aureus A9299]
 gi|258443533|ref|ZP_05691872.1| tyrosine recombinase xerD [Staphylococcus aureus A8115]
 gi|258446740|ref|ZP_05694894.1| tyrosine recombinase xerD [Staphylococcus aureus A6300]
 gi|258448655|ref|ZP_05696767.1| tyrosine recombinase xerD [Staphylococcus aureus A6224]
 gi|258451155|ref|ZP_05699190.1| tyrosine recombinase xerD [Staphylococcus aureus A5948]
 gi|258454271|ref|ZP_05702241.1| tyrosine recombinase xerD [Staphylococcus aureus A5937]
 gi|262049084|ref|ZP_06021961.1| site-specific recombinase [Staphylococcus aureus D30]
 gi|262051169|ref|ZP_06023393.1| site-specific recombinase [Staphylococcus aureus 930918-3]
 gi|269203124|ref|YP_003282393.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282892996|ref|ZP_06301230.1| tyrosine recombinase XerD [Staphylococcus aureus A8117]
 gi|282904077|ref|ZP_06311965.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           C160]
 gi|282905904|ref|ZP_06313759.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908814|ref|ZP_06316632.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282911133|ref|ZP_06318935.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914302|ref|ZP_06322088.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           M899]
 gi|282919271|ref|ZP_06327006.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           C427]
 gi|282924596|ref|ZP_06332264.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           C101]
 gi|282924746|ref|ZP_06332413.1| tyrosine recombinase XerD [Staphylococcus aureus A9765]
 gi|282928967|ref|ZP_06336554.1| tyrosine recombinase XerD [Staphylococcus aureus A10102]
 gi|283958259|ref|ZP_06375710.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|284024557|ref|ZP_06378955.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 132]
 gi|293503379|ref|ZP_06667226.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510394|ref|ZP_06669100.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           M809]
 gi|293530933|ref|ZP_06671615.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           M1015]
 gi|294848527|ref|ZP_06789273.1| tyrosine recombinase XerD [Staphylococcus aureus A9754]
 gi|295406617|ref|ZP_06816422.1| tyrosine recombinase XerD [Staphylococcus aureus A8819]
 gi|296276353|ref|ZP_06858860.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MR1]
 gi|297207783|ref|ZP_06924218.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297245799|ref|ZP_06929664.1| tyrosine recombinase XerD [Staphylococcus aureus A8796]
 gi|297590959|ref|ZP_06949597.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MN8]
 gi|300911864|ref|ZP_07129307.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304380916|ref|ZP_07363576.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|60416269|sp|P0A0N9|XERD_STAAM RecName: Full=Tyrosine recombinase xerD
 gi|60416270|sp|P0A0P0|XERD_STAAN RecName: Full=Tyrosine recombinase xerD
 gi|60416271|sp|P0A0P1|XERD_STAAW RecName: Full=Tyrosine recombinase xerD
 gi|60416272|sp|P0A0P2|XERD_STAAU RecName: Full=Tyrosine recombinase xerD
 gi|81649271|sp|Q6G967|XERD_STAAS RecName: Full=Tyrosine recombinase xerD
 gi|81651036|sp|Q6GGK1|XERD_STAAR RecName: Full=Tyrosine recombinase xerD
 gi|81694449|sp|Q5HFS5|XERD_STAAC RecName: Full=Tyrosine recombinase xerD
 gi|3747042|gb|AAC64162.1| tyrosine recombinase XerD [Staphylococcus aureus]
 gi|13701296|dbj|BAB42590.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247268|dbj|BAB57659.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|21204620|dbj|BAB95316.1| site-specific recombinase [Staphylococcus aureus subsp. aureus MW2]
 gi|49241876|emb|CAG40569.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49244778|emb|CAG43214.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57284639|gb|AAW36733.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus COL]
 gi|87125981|gb|ABD20495.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202860|gb|ABD30670.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147741050|gb|ABQ49348.1| tyrosine recombinase XerD subunit [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946498|gb|ABR52434.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus JH1]
 gi|150374417|dbj|BAF67677.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156721951|dbj|BAF78368.1| site-specific recombinase [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368534|gb|ABX29505.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253728795|gb|EES97524.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257271314|gb|EEV03460.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275122|gb|EEV06609.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278348|gb|EEV08984.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281700|gb|EEV11837.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283871|gb|EEV13994.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           M876]
 gi|257787546|gb|EEV25886.1| tyrosine recombinase XerD [Staphylococcus aureus A9781]
 gi|257840276|gb|EEV64740.1| tyrosine recombinase xerD [Staphylococcus aureus A9763]
 gi|257844095|gb|EEV68483.1| tyrosine recombinase XerD [Staphylococcus aureus A9719]
 gi|257846601|gb|EEV70622.1| tyrosine recombinase XerD [Staphylococcus aureus A9635]
 gi|257848533|gb|EEV72521.1| tyrosine recombinase xerD [Staphylococcus aureus A9299]
 gi|257850939|gb|EEV74882.1| tyrosine recombinase xerD [Staphylococcus aureus A8115]
 gi|257854315|gb|EEV77264.1| tyrosine recombinase xerD [Staphylococcus aureus A6300]
 gi|257857933|gb|EEV80822.1| tyrosine recombinase xerD [Staphylococcus aureus A6224]
 gi|257861210|gb|EEV84023.1| tyrosine recombinase xerD [Staphylococcus aureus A5948]
 gi|257863550|gb|EEV86308.1| tyrosine recombinase xerD [Staphylococcus aureus A5937]
 gi|259160806|gb|EEW45826.1| site-specific recombinase [Staphylococcus aureus 930918-3]
 gi|259162753|gb|EEW47318.1| site-specific recombinase [Staphylococcus aureus D30]
 gi|262075414|gb|ACY11387.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269940989|emb|CBI49373.1| integrase/recombinase [Staphylococcus aureus subsp. aureus TW20]
 gi|282313431|gb|EFB43826.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           C101]
 gi|282317081|gb|EFB47455.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           C427]
 gi|282321483|gb|EFB51808.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           M899]
 gi|282324828|gb|EFB55138.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327078|gb|EFB57373.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282331196|gb|EFB60710.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282589374|gb|EFB94465.1| tyrosine recombinase XerD [Staphylococcus aureus A10102]
 gi|282592753|gb|EFB97759.1| tyrosine recombinase XerD [Staphylococcus aureus A9765]
 gi|282595695|gb|EFC00659.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           C160]
 gi|282764314|gb|EFC04440.1| tyrosine recombinase XerD [Staphylococcus aureus A8117]
 gi|283470776|emb|CAQ49987.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           ST398]
 gi|283790408|gb|EFC29225.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|285817178|gb|ADC37665.1| Site-specific recombinase XerD [Staphylococcus aureus 04-02981]
 gi|290920201|gb|EFD97267.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291095045|gb|EFE25310.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466758|gb|EFF09278.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           M809]
 gi|294824553|gb|EFG40976.1| tyrosine recombinase XerD [Staphylococcus aureus A9754]
 gi|294968364|gb|EFG44388.1| tyrosine recombinase XerD [Staphylococcus aureus A8819]
 gi|296887800|gb|EFH26698.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297177450|gb|EFH36702.1| tyrosine recombinase XerD [Staphylococcus aureus A8796]
 gi|297575845|gb|EFH94561.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MN8]
 gi|298694781|gb|ADI98003.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           ED133]
 gi|300886110|gb|EFK81312.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302751329|gb|ADL65506.1| site-specific recombinase XerD [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340643|gb|EFM06577.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312438035|gb|ADQ77106.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|312829886|emb|CBX34728.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315129770|gb|EFT85760.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315195394|gb|EFU25781.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|315198812|gb|EFU29140.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140619|gb|EFW32473.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144155|gb|EFW35924.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329314175|gb|AEB88588.1| Tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329725291|gb|EGG61778.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           21189]
 gi|329727344|gb|EGG63800.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           21172]
          Length = 295

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 164/304 (53%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTI-RQLSYTEIRAFIS 76
           + +L+ ++IE+GLS  T+ +Y  D +++  ++   TE  I+ I  I RQL    +   I 
Sbjct: 6   EEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYM---TEHHISHIDFIDRQLIQECLGHLID 62

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           + ++ K    S+ R +S I+SF ++  + K   +   + + + K    LP  LN  + L 
Sbjct: 63  QGQSAK----SIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLA 118

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L     L T    K    R+  +L LLY  G+R+SE + L  +N+      +R+ GKGDK
Sbjct: 119 L-----LETPDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDK 173

Query: 197 IRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            RIVPL  +V + +  Y + + P  L   +   LF  + GKPL+     + I+Q      
Sbjct: 174 ERIVPLGDAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKAN 233

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y+
Sbjct: 234 IKKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYN 289

Query: 316 QTHP 319
           Q HP
Sbjct: 290 QFHP 293


>gi|193215186|ref|YP_001996385.1| tyrosine recombinase XerD [Chloroherpeton thalassium ATCC 35110]
 gi|193088663|gb|ACF13938.1| tyrosine recombinase XerD [Chloroherpeton thalassium ATCC 35110]
          Length = 305

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/306 (33%), Positives = 157/306 (51%), Gaps = 20/306 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER LS+ T  SY  D  ++L+++      + + + + ++   ++R FI++ 
Sbjct: 13  REFLNYLRLERNLSENTKASYAHDLTRYLLYV------QDSHENLDEVRAEDVRKFITEL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYL----KKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
               +   S+ R++S I+S  K+L    K RK   E  IL     K    LP  LN+++ 
Sbjct: 67  HDLGLEASSISRNISAIRSLHKFLSAEKKIRKNVAEEVILP----KLGKYLPTVLNQQEV 122

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L++ + LH  +    +  R+ AIL  LY  G+R+SE + L  QN+  D    RI GKG
Sbjct: 123 DKLLE-MPLHPENPKPKLAIRDKAILEFLYATGVRVSELVELKQQNLFFDSGFARIFGKG 181

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            K R+VP+  S   A+  Y       L N      LF   RGK L        +++  + 
Sbjct: 182 AKERLVPVGSSAIHAVETYQKTIRIKLVNRASADFLFLNARGKKLTRMSIYNIVQEYAQQ 241

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+  S + HTLRHSFATHLL  G DLRS+Q +LGH  +  TQIYT+V+      ++ E+
Sbjct: 242 AGIEKSISPHTLRHSFATHLLEGGADLRSVQEMLGHSSIKATQIYTHVDRA----FIKEV 297

Query: 314 YDQTHP 319
           +   HP
Sbjct: 298 HKSFHP 303


>gi|190575908|ref|YP_001973753.1| site-specific tyrosine recombinase XerC [Stenotrophomonas
           maltophilia K279a]
 gi|190013830|emb|CAQ47468.1| putative integrase/recombinase [Stenotrophomonas maltophilia K279a]
          Length = 298

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/301 (31%), Positives = 157/301 (52%), Gaps = 21/301 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +LQ+L++ER +S  TL +Y  D    L  L+ + E +     +  L    +R F++  
Sbjct: 5   QAFLQHLQVERRMSAHTLDAYRRD----LDALSVWAEPRGV--AVEALDADALRQFVADE 58

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +  +SL+R LS  +SF  +L K      S    ++  +    LP+ L+  +A+ LV
Sbjct: 59  HRRGLSAKSLQRRLSACRSFYAWLLKHGRIEVSPAATLKAPRAPRRLPQVLDADEAVQLV 118

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +   L    E   +  R+ A+L L Y  GLR+SE  +LT +++  D   + + GKG++ R
Sbjct: 119 E---LEPEGE---LGRRDRALLELFYSSGLRLSEVCALTWRDLDFDSGLVNVLGKGNRQR 172

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            VP     R+A+  +      +       P+F G R  P++    Q  IRQL +  GL  
Sbjct: 173 RVPFGRPAREALQAWR----AESGGGPASPVFPG-RNGPISQRAVQIRIRQLAQRQGLFK 227

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRHSFA+H+L + GDLR +Q +LGH  ++TTQIYT+++ ++    + ++YD  H
Sbjct: 228 HVHPHMLRHSFASHILESSGDLRGVQELLGHADIATTQIYTHLDFQH----LAKVYDAAH 283

Query: 319 P 319
           P
Sbjct: 284 P 284


>gi|49084748|gb|AAT51227.1| PA5280 [synthetic construct]
          Length = 304

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 156/309 (50%), Gaps = 27/309 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L++L  ER +S  TL  Y    R  L  LA    EK  +     L    +R F+++   
Sbjct: 8   FLEHLRSERQVSAHTLDGYR---RDLLKILAL--AEKAGLSDWNALDTRSLRTFVARLHQ 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q    RSL R LS  +   +YL +           +   K    LPR L+  +AL L+D 
Sbjct: 63  QGQSSRSLARLLSATRGLYQYLLREGRCRHDPANGLSAPKSPRKLPRTLDADRALQLLDG 122

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +     E  +I  R+ A+L L Y  GLR+SE + L  + +   +  +R++GKG+++R +
Sbjct: 123 AV-----EDDFIARRDQALLELFYSSGLRLSELVGLDLEWLDLKEGLVRVRGKGNRVREL 177

Query: 201 PLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR-RYLG 255
           P+  + R+A+  +  L     P D        +F G  GK L P   Q  +RQ   R LG
Sbjct: 178 PVGKAARQALEAWLPLRTQAAPEDG------AVFIGRSGKRLTPRAIQLRVRQAGVRELG 231

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
             L    H LRHSFA+HLL + GDLR++Q +LGH  ++TTQIYT+++ ++    +  +YD
Sbjct: 232 QRLHP--HMLRHSFASHLLESSGDLRAVQELLGHADIATTQIYTHLDFQH----LASVYD 285

Query: 316 QTHPSITQK 324
           + HP   +K
Sbjct: 286 RAHPRAKRK 294


>gi|305667659|ref|YP_003863946.1| putative tyrosine recombinase [Maribacter sp. HTCC2170]
 gi|88709709|gb|EAR01942.1| putative tyrosine recombinase [Maribacter sp. HTCC2170]
          Length = 298

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/303 (33%), Positives = 157/303 (51%), Gaps = 16/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q++   L IERGLS  ++++Y  D  + + FL       + I  I+ +    ++AFI + 
Sbjct: 8   QDFQHYLRIERGLSDNSIKNYVWDVEKLVGFLDV---NDMVISPIK-IDKETVQAFIYEI 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + I  RS  R +SG+KSF  YL       ++ +  + + K    LP  L+E +   L+
Sbjct: 64  -AKTINPRSQARIISGLKSFFNYLNFEDYRQDNPMDLLESPKIGRKLPDTLSEDEINQLI 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D + L     +K    RN A+L  LYGCGLR+SE + L   ++  ++  +++ GKG+K R
Sbjct: 123 DAIDL-----SKPEGERNRAMLETLYGCGLRVSELIGLKISDLFFEEDFIKVTGKGNKQR 177

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            VP+    +K I  Y         +       LF   RGK L   +    I+QL   + L
Sbjct: 178 FVPISDFNKKYINIYRKEIRVHQKIQKGFDDILFLNRRGKQLTRAMIFTIIKQLAVKIDL 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S + HT RHSFATHLL NG DLR+IQ +LGH  ++TT++Y +V+  +  D M    ++
Sbjct: 238 GKSISPHTFRHSFATHLLQNGADLRAIQQMLGHESITTTEVYMHVDRTHLADVM----NK 293

Query: 317 THP 319
            HP
Sbjct: 294 YHP 296


>gi|227431702|ref|ZP_03913732.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352526|gb|EEJ42722.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 298

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/301 (30%), Positives = 164/301 (54%), Gaps = 16/301 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  + IERGLS+ T++SY  D  QF  +L     EK+ +    Q+ +  I +++++ R
Sbjct: 11  DYLHYIRIERGLSENTIKSYHQDLVQFGEYL---NGEKLVLD---QVDHIVILSWLNQLR 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                + S+ R ++ +++F  YL + K+   + + ++R  KK+  LP  L+ ++      
Sbjct: 65  DLGKSNSSVIRMVTTLRNFFGYLVREKVVAHNPMNDVRPPKKAEHLPAVLSIEEI----- 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           + LL    E   +  RN  ++ ++Y  GLR+SE ++L   ++      ++  GKGDK RI
Sbjct: 120 DRLLQAPIEDTPLGLRNRTLIEVMYATGLRVSELVNLKMSDLHLQLGLIQTLGKGDKERI 179

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +P+       +  Y++     L  + + P +F   RG  ++     + I++L    G+  
Sbjct: 180 IPIGEIAIDWLTRYFNESRIVLLKDKESPYVFLNDRGNQISRQGIWKIIKKLVTTAGITK 239

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HTLRHSFATH+L NG DLR +Q +LGH  +STTQIYT+++ K     + E+YD+ H
Sbjct: 240 DVSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKR----LSEVYDEYH 295

Query: 319 P 319
           P
Sbjct: 296 P 296


>gi|329730857|gb|EGG67235.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           21193]
          Length = 295

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 164/304 (53%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTI-RQLSYTEIRAFIS 76
           + +L+ ++IE+GLS  T+ +Y  D +++  ++   TE  I+ I  I RQL    +   I 
Sbjct: 6   EEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYM---TEHHISHIDFIDRQLILECLGHLID 62

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           + ++ K    S+ R +S I+SF ++  + K   +   + + + K    LP  LN  + L 
Sbjct: 63  QGQSAK----SIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLA 118

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L     L T    K    R+  +L LLY  G+R+SE + L  +N+      +R+ GKGDK
Sbjct: 119 L-----LETPDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDK 173

Query: 197 IRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            RIVPL  +V + +  Y + + P  L   +   LF  + GKPL+     + I+Q      
Sbjct: 174 ERIVPLGDAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKAN 233

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y+
Sbjct: 234 IKKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYN 289

Query: 316 QTHP 319
           Q HP
Sbjct: 290 QFHP 293


>gi|163791502|ref|ZP_02185908.1| integrase/recombinase XerD, putative [Carnobacterium sp. AT7]
 gi|159873225|gb|EDP67323.1| integrase/recombinase XerD, putative [Carnobacterium sp. AT7]
          Length = 296

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/303 (33%), Positives = 163/303 (53%), Gaps = 16/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L IERGLSK T++SY+ D  Q+L F+    E K+T     Q+    + +F+ K 
Sbjct: 6   EEYLRFLTIERGLSKNTIESYKRDISQYLTFIE---ENKLTEWV--QIDRYVVLSFLQKL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +  +    ++ R +S ++ F ++LK+ +++    +L++   KK+  LP+ L+ K+    V
Sbjct: 61  KENQKSAGTIIRMISCLRQFHQFLKQEQLSLTDPMLHIDTPKKAQKLPKVLSIKE----V 116

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D  L+ T +  + +  R+ A+L +LY  GLR+SE   L   ++      ++  GKGDK R
Sbjct: 117 DR-LIETPNTGETLGLRDRAMLEVLYATGLRVSELTELKLNDLHLSLGLIQTIGKGDKER 175

Query: 199 IVPLLPSVRKAILEY--YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           I+PL     + I +Y  Y     +   +    LF    G+ L      + ++ L +  G+
Sbjct: 176 ILPLGDMAIEWIEKYRRYSRSKLEKEGHRSPYLFLNHHGRKLTRQGVWKNLKILVKKAGI 235

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               T HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT++  +     M  +Y  
Sbjct: 236 EKEVTPHTLRHSFATHLLENGADLRVVQELLGHSDISTTQIYTHITKQR----MSSVYKT 291

Query: 317 THP 319
            HP
Sbjct: 292 YHP 294


>gi|167579401|ref|ZP_02372275.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis
           TXDOH]
          Length = 306

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 160/319 (50%), Gaps = 33/319 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L NL   R LS  TL++Y  +  +          +    + +  L+  ++R  +++  
Sbjct: 8   DYLSNLRHVRKLSDHTLRAYAHELGEL--------RKLANGRPLESLTAVDMRGAVARAH 59

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +  RS+   LS  ++F ++  +      + +  +R  K++ +LP+AL+   A  L+D
Sbjct: 60  AGGLSARSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDAAALMD 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTL 188
                T+        R+ AIL L Y  GLR++E + L  +   D            ++ +
Sbjct: 120 APTAGTAEHL-----RDHAILELFYSSGLRLAELIGLDVEYTKDGDYRSEGWLDLAEAEV 174

Query: 189 RIQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            ++GKGDK R VP+    RKAI  L  +     +       PLF  +RG  ++PGV +  
Sbjct: 175 TVRGKGDKERKVPV---GRKAIDALNAWLAVRGEFVKRDARPLFLSVRGNRMSPGVVRER 231

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  +S TQ+YT+++ ++ 
Sbjct: 232 VKRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQH- 290

Query: 307 GDWMMEIYDQTHPSITQKD 325
              + +IYD  HP   ++D
Sbjct: 291 ---LAKIYDSAHPRAKKRD 306


>gi|332994410|gb|AEF04465.1| tyrosine recombinase [Alteromonas sp. SN2]
          Length = 305

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/285 (31%), Positives = 151/285 (52%), Gaps = 10/285 (3%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            ++  L +E+GLS  T QSY  D  +  IF          I+ I  L+   ++ +++ R 
Sbjct: 18  GFIDMLWLEKGLSDHTQQSYRTDLTKLAIFC-----NNQGIKDIAVLTTEMMQDYLAYRH 72

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +  RS +R++S +++F  YL  ++I  ++ I ++ N K   SLP +L+E+Q   L+ 
Sbjct: 73  DKGLSARSTQRAMSALRAFYTYLIGKQIRVDNPISSLSNPKLPKSLPASLSERQVEDLLA 132

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             L+        I+ R+ ++L +LY  GLR+SE + L    +   Q  +R+ GKG+K R+
Sbjct: 133 APLIEDP-----IECRDKSMLEVLYATGLRVSELIGLQMSEVSLQQGVVRVTGKGNKDRL 187

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPL     + +L Y       L       ++   RG+ +    F   I+       +   
Sbjct: 188 VPLGEDAIEWLLTYIKTARPVLATKQSDYVYLSKRGQKMTRQTFWHRIKYYAVKANIEQH 247

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++
Sbjct: 248 LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATE 292


>gi|146308415|ref|YP_001188880.1| site-specific tyrosine recombinase XerD [Pseudomonas mendocina ymp]
 gi|145576616|gb|ABP86148.1| tyrosine recombinase XerD subunit [Pseudomonas mendocina ymp]
          Length = 298

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/302 (32%), Positives = 149/302 (49%), Gaps = 16/302 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L +E+GLS  T  +Y  D   F  +L       + +Q I       I   ++ R
Sbjct: 10  ERFLETLWLEKGLSAHTRAAYRSDLEHFNHWL---DGRGLQLQCI---GRDAILDHLAWR 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q    RS  R LSG++ F ++L +  +  E   L +   +    LP++L+E       
Sbjct: 64  LEQGYQARSTARFLSGVRGFYRFLLREGVVEEDPSLQVELPQIGRPLPKSLSEADV---- 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL        I  R+ A+L +LY CGLR+SE + LT + +   Q  LR+ GKG K R
Sbjct: 120 -EALLQAPDLDDPIGLRDRAMLEVLYACGLRVSELVGLTLEQVNLRQGVLRVFGKGSKER 178

Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       I  Y  +  P  L       LF  +RG+ +    F   I+   +  G+ 
Sbjct: 179 LVPLGEEAIAWIERYSREARPLLLGGKPSDVLFPSLRGEQMTRQTFWHRIKHQAKVAGIG 238

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT++        + E++ + 
Sbjct: 239 KSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARAR----LQELHAKH 294

Query: 318 HP 319
           HP
Sbjct: 295 HP 296


>gi|293609893|ref|ZP_06692195.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828345|gb|EFF86708.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 304

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 170/306 (55%), Gaps = 24/306 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+  +I+   S+ T+ +YE D + FL F     E K     +R +  +++R ++++R  
Sbjct: 11  WLKERKIQ-NQSEHTINAYERDVKSFLEF----CEHKQL--DLRNIEASDLREYLAQRVE 63

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           Q ++   S++R L+ I+ F+K+ ++ K    +   + +  ++   LP  ++ +    ++D
Sbjct: 64  QDQLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILD 123

Query: 140 NVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             +     + + W+  R+ A+L LLY  GLR++E   LT +++  ++  +RI GKG+K R
Sbjct: 124 QPMPEKPVDQQLWL--RDKAMLELLYSSGLRLAELQGLTVKDVDFNRQLVRITGKGNKTR 181

Query: 199 IVPLLPSVRKAILEYYDLCP-----FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           IVP     ++++L +  +       FD N ++    F  +RG  L P   ++ ++   + 
Sbjct: 182 IVPFGKKAKESLLNWLKVYKIWKGHFDQNDSV----FISLRGGALTPRQIEKRVKLQAQR 237

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+ +    H LRH FA+H+LS+ GDLRS+Q +LGH  LSTTQIYT+++     D + ++
Sbjct: 238 AGVNVDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHLAQV 293

Query: 314 YDQTHP 319
           YDQ HP
Sbjct: 294 YDQAHP 299


>gi|163941832|ref|YP_001646716.1| site-specific tyrosine recombinase XerD [Bacillus
           weihenstephanensis KBAB4]
 gi|229013300|ref|ZP_04170441.1| Tyrosine recombinase xerD [Bacillus mycoides DSM 2048]
 gi|229061763|ref|ZP_04199096.1| Tyrosine recombinase xerD [Bacillus cereus AH603]
 gi|163864029|gb|ABY45088.1| tyrosine recombinase XerD [Bacillus weihenstephanensis KBAB4]
 gi|228717509|gb|EEL69173.1| Tyrosine recombinase xerD [Bacillus cereus AH603]
 gi|228748067|gb|EEL97931.1| Tyrosine recombinase xerD [Bacillus mycoides DSM 2048]
          Length = 296

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 160/304 (52%), Gaps = 18/304 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  + +E+GL+K T+ SYE D + ++ +L    + K    T  +++   I  F+   
Sbjct: 6   KDFIHYMIVEKGLAKNTVVSYERDLKSYVKYLQNVEQTK----TFHEVTRLHIVNFLQHL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +      ++L R ++ I+SF ++L + +       +++   +    LP+ L+       +
Sbjct: 62  KENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLS-------I 114

Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           D V  LL T         R+ A+L LLY  GLR+SE ++L  +++      +R  GKG+K
Sbjct: 115 DEVEALLQTPKTASAFGIRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNK 174

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            RI+PL     +AI +Y +    +L     +  LF    G  L+   F + +++L +   
Sbjct: 175 ERIIPLGSLATEAIQKYIEKGRRELMGKKAVDALFLNHHGNRLSRQGFWKILKRLAKEAN 234

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + ++Y 
Sbjct: 235 IAKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKDVYK 290

Query: 316 QTHP 319
           Q HP
Sbjct: 291 QFHP 294


>gi|256819226|ref|YP_003140505.1| tyrosine recombinase XerD [Capnocytophaga ochracea DSM 7271]
 gi|315224660|ref|ZP_07866483.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287]
 gi|256580809|gb|ACU91944.1| tyrosine recombinase XerD [Capnocytophaga ochracea DSM 7271]
 gi|314945288|gb|EFS97314.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287]
          Length = 303

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/313 (33%), Positives = 164/313 (52%), Gaps = 39/313 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY--TEEKITIQ--TIRQLSYTEIRAF 74
           QN+L+   ++RGLS+ T+ SY  D  + + +L  Y  TE   TIQ  T+RQ  Y      
Sbjct: 10  QNYLR---LQRGLSQNTVVSYGLDIEKLIGYLEKYNITEPPDTIQVDTLRQFVYE----- 61

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +SK    ++  RS  R +S +KSF K++   K   +  +  + + K    LP  L+ K+ 
Sbjct: 62  VSK----ELNARSQARLISALKSFFKFMISEKGREDFPMSLIDSPKIGVKLPDTLSLKEI 117

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             ++ ++ L T         RN AI+  LYGCGLR+SE +SL   ++  ++  +R+ GKG
Sbjct: 118 DAMLASIDLSTDE-----GHRNKAIIETLYGCGLRVSELVSLRLSDLFFEEDFIRVMGKG 172

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--------RGKPLNPGVFQRY 246
            K R+VP+    +K I  Y +      N   QL + +G         RGK L   +    
Sbjct: 173 SKQRLVPIESYTQKQINNYIN------NQRKQLKIAKGHEDYVFLNRRGKQLTRAMIFTI 226

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +RQ+   +GL  + + HT RHSFATHLL NG +LR+IQ +LGH  ++TT+IY +V     
Sbjct: 227 VRQVAENIGLQKTISPHTFRHSFATHLLENGANLRAIQMMLGHENITTTEIYVHVEK--- 283

Query: 307 GDWMMEIYDQTHP 319
             ++ E   + HP
Sbjct: 284 -SYLREALVKYHP 295


>gi|194333360|ref|YP_002015220.1| integrase family protein [Prosthecochloris aestuarii DSM 271]
 gi|194311178|gb|ACF45573.1| integrase family protein [Prosthecochloris aestuarii DSM 271]
          Length = 335

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/321 (32%), Positives = 166/321 (51%), Gaps = 28/321 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT--EEKITIQTIRQLSYTEIRAFIS 76
           + +L  + +ER  S+ T ++Y  D  QF  F+ +     +K  I     +S  ++R F+ 
Sbjct: 21  KGFLDYVTLERHFSRHTREAYRTDICQFYTFIRYQHTLADKDPIDPA-SISVLDVRLFMG 79

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKR---KITTESNILNMRNLKKSNSLPRALNEKQ 133
           +   + +  +S+ R L+ +KSF  YL +    K++  S ++  R    S  +P  L+E++
Sbjct: 80  ELLEKGLQPKSIARKLAAVKSFYNYLLETGAVKVSVPSQVITPRF---SKPVPGFLSERE 136

Query: 134 ALTLVDNVL-LHTSHET---------KWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
              L D +L L    E           +  AR+ A+L +LYGCGLRISE + L  +N+  
Sbjct: 137 TEKLFDELLSLPAPGEALGAVRAGDGGFTYARDRALLEVLYGCGLRISEVIGLQYENVNL 196

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLP----LFRGIRGKPL 238
             S LR+ GKG K RIVPL    R A+  Y+++   F    N + P    +F   +G+ +
Sbjct: 197 QDSLLRVSGKGGKQRIVPLGGPARTALRNYFEVRRNFFRMKNEESPDASYVFVTKKGRRI 256

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            P + QR  R+    +        H LRHSFATH+L++G DL+S+  +LGH  L+TT+IY
Sbjct: 257 YPVLVQRVTRKYLSAVTEIKYKNPHVLRHSFATHMLNSGADLKSVSEMLGHTNLTTTEIY 316

Query: 299 TNVNSKNGGDWMMEIYDQTHP 319
           T+V        + E+Y + HP
Sbjct: 317 THVTFGR----IKEVYLKAHP 333


>gi|227513310|ref|ZP_03943359.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus buchneri
           ATCC 11577]
 gi|227083511|gb|EEI18823.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus buchneri
           ATCC 11577]
          Length = 295

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 160/303 (52%), Gaps = 19/303 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L +ERGLS+ T++SY+ D  + + F    T++   +     L+Y E        +
Sbjct: 7   DYLHFLRVERGLSENTIKSYQQDLSEAIHFFQKTTKDISKVDQFLILNYLE------NLQ 60

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +K    ++ R++S +++F +YL +  +  +  +L + + K+S +LP  L+  +      
Sbjct: 61  QEKKSRNTVIRTVSSLRNFFRYLAQFGVVPDDPMLKVDSPKQSKTLPDVLSVSEV----- 115

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           N LL   + +K +  R+ A+L  LY  GLR+SE ++L   ++      ++  GKGD+ RI
Sbjct: 116 NKLLSMPNVSKPLGVRDRAMLETLYATGLRVSELVNLRLVDLHLPMKLIQTVGKGDRERI 175

Query: 200 VPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +P+       I +Y      DL     N    +F    G+ L      + I++  +  G+
Sbjct: 176 IPIGDVAIDWITQYLKTTRIDLLRKRTNTDF-VFLNAHGRRLTRQAIWQMIKKYVKLAGI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               T HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT+++ K+    + E+Y +
Sbjct: 235 KRHVTPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHISHKH----LTEVYQK 290

Query: 317 THP 319
            HP
Sbjct: 291 FHP 293


>gi|300088077|ref|YP_003758599.1| tyrosine recombinase XerD [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527810|gb|ADJ26278.1| tyrosine recombinase XerD [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 303

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/301 (30%), Positives = 152/301 (50%), Gaps = 9/301 (2%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N+L  L +E+G S  T  +Y  D  Q   F      ++         +  ++ +++   +
Sbjct: 7   NFLNYLMVEKGFSGNTRDAYHNDLYQLADFSTRCLRQRGDQDLWDNFNRQDMLSYLLDLK 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +     ++ R L+  KSF  +L +     ++   N+ + K    LP A++ +Q   L++
Sbjct: 67  ERNYAVTTVVRKLAAAKSFFSFLLEENKIRQNPTDNIESPKVGKPLPDAISVQQVKALLE 126

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              L    E K    R+ A+L LLY  G+R+SE + L   ++  D+  +R  GKG+K RI
Sbjct: 127 QPTLAGGPEAK----RDRAMLELLYASGMRVSELIGLDLADVDCDEEQVRCFGKGNKERI 182

Query: 200 VPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +P+ P   + + EY + + P  +  N +  LF   RG+ L      + +++     GL  
Sbjct: 183 IPIHPQAARIVSEYIEEVRPRLVRSNDEKALFLNRRGERLTRQGLWQILKEYAVAAGLNG 242

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             T HTLRHSFATH+L+ G DLRS+Q +LGH  +STTQIYT++ S    D +   YD  H
Sbjct: 243 QVTPHTLRHSFATHMLNGGADLRSVQELLGHANISTTQIYTHLTS----DHIRRAYDSAH 298

Query: 319 P 319
           P
Sbjct: 299 P 299


>gi|312900737|ref|ZP_07760034.1| tyrosine recombinase XerD [Enterococcus faecalis TX0470]
 gi|295112966|emb|CBL31603.1| tyrosine recombinase XerD subunit [Enterococcus sp. 7L76]
 gi|311292218|gb|EFQ70774.1| tyrosine recombinase XerD [Enterococcus faecalis TX0470]
 gi|315169704|gb|EFU13721.1| tyrosine recombinase XerD [Enterococcus faecalis TX1342]
          Length = 296

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/304 (31%), Positives = 162/304 (53%), Gaps = 20/304 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L+IERGLS  T +SYE D ++++ FL     ++  + +  ++    I  F+    
Sbjct: 7   DYLHYLQIERGLSNNTRRSYERDLKKYVAFL-----QEQGLHSWDEVDRYMITEFLQSLH 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            ++    S+ R +S ++ F ++L++ +++  + + ++ + KK   LP  L+       VD
Sbjct: 62  EEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLS-------VD 114

Query: 140 NV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            V  L+     +K +  RN AIL ++Y  GLR+SE + +   ++      L+  GKGDK 
Sbjct: 115 EVTRLIEAPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKE 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           RI+PL     + I  Y +     L  N   +  LF    G+PL+     + ++Q+ R   
Sbjct: 175 RIIPLGDYAIQWIERYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQ 234

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + T HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT++  +     M ++Y 
Sbjct: 235 IEKNITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQR----MADVYK 290

Query: 316 QTHP 319
           +  P
Sbjct: 291 EHFP 294


>gi|312110344|ref|YP_003988660.1| tyrosine recombinase XerD [Geobacillus sp. Y4.1MC1]
 gi|311215445|gb|ADP74049.1| tyrosine recombinase XerD [Geobacillus sp. Y4.1MC1]
          Length = 299

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 161/306 (52%), Gaps = 16/306 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E +++L  L +ER L+K T+ SYE D +++    A Y      IQ+   +S   I  F+ 
Sbjct: 5   ELKDFLHYLTVERNLAKNTIVSYERDLKKY----AHYLRHVEQIQSWNDVSRLHIMQFLK 60

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             + +    +++ R ++ I+SF ++L + KI  +   +++ + +   +LP+ L+ ++   
Sbjct: 61  FLKEKGSSPKTIARHIASIRSFHQFLLREKIADQDPSVHIESPQMERTLPKVLSLEEVEA 120

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L++    +T      I  R+ A++ LLY  G+R+SE ++L   ++      +R  GKG+K
Sbjct: 121 LLEAPKTNTP-----IGIRDKAMIELLYATGMRVSELVNLNLSDVHLTMGFVRCYGKGNK 175

Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRY 253
            RIVP+      A+  Y +   P  +N   +    LF    G  L    F + +++L + 
Sbjct: 176 ERIVPIGSMALDALKAYLETARPKLINPKKRATDALFLNHYGDRLTRQGFWKILKKLAKE 235

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V      D    +
Sbjct: 236 ANIEKELTPHTLRHSFATHLLENGADLRAVQELLGHADISTTQIYTHVTKTRLKD----V 291

Query: 314 YDQTHP 319
           Y Q HP
Sbjct: 292 YKQFHP 297


>gi|313884807|ref|ZP_07818559.1| putative tyrosine recombinase XerC [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619498|gb|EFR30935.1| putative tyrosine recombinase XerC [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 304

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/311 (32%), Positives = 165/311 (53%), Gaps = 18/311 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  ++ E+  S LT Q+Y+ D ++F  FLA    +++     + +SY +IR FI+    
Sbjct: 8   FITYIQDEKRYSPLTAQAYQRDLKEFAHFLASSGNDQV-----QSISYYDIRLFIAFLNE 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK-KSNSLPRALNEKQALTLVD 139
           +++   S+ R LS ++SF K+++  +   + N +++ N + K   LP    E +      
Sbjct: 63  KRLSRTSIARKLSTLRSFFKFMQV-ETKLDQNPMDLVNYQVKKQRLPDFFYEDEM----- 116

Query: 140 NVLLHTSHETKW-IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             LL  + E++  +  RN AIL +LY  GLR+SE   L    +      LR+ GKG+K R
Sbjct: 117 QALLKAAAESEHPLALRNQAILEVLYASGLRVSECRLLELGQVDFLAQVLRVHGKGNKER 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           IVP+  S  + + +Y       L++  Q   +F   +GK L      + + ++     L 
Sbjct: 177 IVPMSDSASQTMQDYIKYLRPKLDVTGQAKQVFLSNKGKTLTTRQVSQILNEIVAEGALN 236

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           LS   H LRH+FATHLL+NG DLRS+Q +LGH  LS+TQIYT++      D + E Y   
Sbjct: 237 LSIHPHKLRHTFATHLLNNGADLRSVQEMLGHADLSSTQIYTHITK----DKLRENYMHL 292

Query: 318 HPSITQKDKKN 328
           HP   ++ K++
Sbjct: 293 HPRAHRQTKED 303


>gi|325123125|gb|ADY82648.1| site-specific tyrosine recombinase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 295

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 169/306 (55%), Gaps = 24/306 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+  +I+   S+ T+ +YE D + FL F      +      +R +  +++R ++++R  
Sbjct: 2   WLKERKIQ-NQSEHTITAYERDVKSFLEFCEHKQLD------LRNIEASDLREYLAQRVE 54

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           Q ++   S++R L+ I+ F+K+ ++ K    +   + +  ++   LP  ++ +    ++D
Sbjct: 55  QDQLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILD 114

Query: 140 NVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             +     + + W+  R+ A+L LLY  GLR++E   LT +++  ++  +RI GKG+K R
Sbjct: 115 QPMPEKPVDQQLWL--RDKAMLELLYSSGLRLAELQGLTVKDVDFNRQLVRITGKGNKTR 172

Query: 199 IVPLLPSVRKAILEYYDLCP-----FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           IVP     ++++L +  +       FD N ++    F  +RG  L P   ++ ++   + 
Sbjct: 173 IVPFGKKAKESLLNWLKVYKIWKGHFDQNDSV----FISLRGGALTPRQIEKRVKLQAQR 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+ +    H LRH FA+H+LS+ GDLRS+Q +LGH  LSTTQIYT+++     D + ++
Sbjct: 229 AGVNVDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHLAQV 284

Query: 314 YDQTHP 319
           YDQ HP
Sbjct: 285 YDQAHP 290


>gi|254246904|ref|ZP_04940225.1| Phage integrase [Burkholderia cenocepacia PC184]
 gi|124871680|gb|EAY63396.1| Phage integrase [Burkholderia cenocepacia PC184]
          Length = 355

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 162/318 (50%), Gaps = 33/318 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L NL+  R LS+ TL++Y  +  +     A         + +  L+  ++R  + +   
Sbjct: 58  YLSNLKHVRQLSEHTLRAYTHELDELKKLAAG--------RPLDALTAADMRGAVVRGHA 109

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS+   LS  ++F ++  +R     + +  +R  K+  SLP+AL+   A+ L+D 
Sbjct: 110 AGLSARSISHRLSAWRAFYRWFAQRVEMPANPVAGVRAPKREKSLPKALSVDDAVALMDA 169

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTLR 189
            L  T+        R+ AIL L Y  GLR++E + L  +    D           ++ + 
Sbjct: 170 PLAGTTESI-----RDHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLAEAEVT 224

Query: 190 IQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           ++GKG+K R VP+     KAI  L  +     +   +   PLF  +RG  ++PGV +  +
Sbjct: 225 VRGKGNKERKVPV---GSKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMSPGVVRERV 281

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  ++ TQIYT+++ ++  
Sbjct: 282 KRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQH-- 339

Query: 308 DWMMEIYDQTHPSITQKD 325
             + +IYD  HP   ++D
Sbjct: 340 --LAKIYDSAHPRAKKRD 355


>gi|33594003|ref|NP_881647.1| site-specific tyrosine recombinase XerC [Bordetella pertussis
           Tohama I]
 gi|33564077|emb|CAE43345.1| putative integrase/recombinase [Bordetella pertussis Tohama I]
 gi|332383420|gb|AEE68267.1| site-specific tyrosine recombinase XerC [Bordetella pertussis CS]
          Length = 326

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 156/323 (48%), Gaps = 27/323 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +WL++L+  R  S  TL  Y  D RQ         +       + +++   IR F+++  
Sbjct: 16  DWLRHLQAHRRYSAHTLDGYTRDLRQLA------QQAAAAGLPLERVANGHIRHFVARLH 69

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q +G RSL R+L+  + F ++         +    +R  K    LP+AL+ +Q   L+D
Sbjct: 70  AQGLGPRSLARALAAWRGFYQWWAPAAGLPGNPATGVRAPKAPRGLPKALSVEQTQVLLD 129

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL------TPQN-----IMDDQSTL 188
           +     + E   +  R+ A+  LLY  GLR++E +SL      TP+      +  D + +
Sbjct: 130 HAPARLATEPAAL--RDHAMFELLYSSGLRLAELVSLDLRYERTPEYESRSWLNRDDAEV 187

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL----FRGIRGKPLNPGVFQ 244
            + GKG K R VP+  S   A+ ++    P               F G RG+ + P V Q
Sbjct: 188 IVVGKGGKRRSVPVGQSALAALDKWLQARPQLAAAGAGAQDAAALFVGARGRRIAPRVVQ 247

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             + +L +  GLP     H LRHSFA+H+L +  DLR++Q +LGH  +STTQ+YT ++ +
Sbjct: 248 LQLARLAQAAGLPAHVHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQVYTRLDFQ 307

Query: 305 NGGDWMMEIYDQTHPSITQKDKK 327
           +    +   YDQ HP   +K  +
Sbjct: 308 H----LARAYDQAHPRAGRKTSR 326


>gi|239826606|ref|YP_002949230.1| site-specific tyrosine recombinase XerC [Geobacillus sp. WCH70]
 gi|239806899|gb|ACS23964.1| tyrosine recombinase XerC [Geobacillus sp. WCH70]
          Length = 300

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/306 (33%), Positives = 161/306 (52%), Gaps = 25/306 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +++ L++E+  S+ T+  Y+ D  QF  F+      +  I  + +++Y ++R +++K   
Sbjct: 11  FIEYLQVEKNYSQYTIVCYQRDVEQFFEFM-----NEQGIHHLHEVTYNDVRLYLTKLYE 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ--ALTLV 138
           QK   RS+ R +S ++SF K+L + K   E+        KK   +P  L E++   L  V
Sbjct: 66  QKQSSRSISRKISSLRSFYKFLLREKKVKENPFALAALPKKEQKIPNFLYEQELEKLFYV 125

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           ++V          I  RN AIL LLY  G+R+SE   +   +I    ST+ I GKG+K R
Sbjct: 126 NDV-------NTAIGQRNQAILELLYATGVRVSECCHIQLSDIDFSVSTILIHGKGNKQR 178

Query: 199 IVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNP-GVFQRYI-RQLRRY 253
            VP     ++A+  Y      +L     +    LF   RG PL P GV  RYI  ++ + 
Sbjct: 179 YVPFGRFAKEALERYIHHGRRELLQKAKSAHAYLFVNARGNPLTPRGV--RYILDEIVKK 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L  + + H LRH+FATHLL+ G D+R++Q +LGH  LS+TQ+YT+V      D +  I
Sbjct: 237 AALTQNISPHVLRHTFATHLLNEGADMRTVQELLGHAHLSSTQVYTHVTK----DRLRHI 292

Query: 314 YDQTHP 319
           Y  THP
Sbjct: 293 YLHTHP 298


>gi|297616683|ref|YP_003701842.1| tyrosine recombinase XerD [Syntrophothermus lipocalidus DSM 12680]
 gi|297144520|gb|ADI01277.1| tyrosine recombinase XerD [Syntrophothermus lipocalidus DSM 12680]
          Length = 296

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/296 (33%), Positives = 152/296 (51%), Gaps = 14/296 (4%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  ERGLS+ TLQ+Y  D   FL+    Y E++  I  I Q+   ++  F+         
Sbjct: 12  LNFERGLSENTLQAYRRDIGSFLV----YCEKERGISDISQVKRHDVVDFLGWLLKGGRA 67

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             SL R+LS +KSF ++++K +    +   N+ + +    LPR L+  +        LL 
Sbjct: 68  YSSLARTLSALKSFFRFMQKERYILTNPTDNIESPQVVRRLPRVLSVSEV-----EKLLE 122

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
             +       R+ A+L L+Y  GLR+SE L+L  ++I      +R  GKG K RIVP+  
Sbjct: 123 QPNPVTVRGIRDRAMLELMYATGLRVSELLALQLEDINLVAGFVRCLGKGRKERIVPVNK 182

Query: 205 SVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           +    +  Y       L   +++  LF   +GK L+   F + +    R  G+      H
Sbjct: 183 TSVFWVERYISRSRNHLVKSSLERTLFVNAKGKKLSRQGFWKILNGYARQAGIEKEIHPH 242

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           TLRHSFATHLL NG DLR++Q +LGH  +STTQIYT++        + E+Y+++HP
Sbjct: 243 TLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHLTKSR----LREVYEKSHP 294


>gi|228473046|ref|ZP_04057803.1| tyrosine recombinase XerD [Capnocytophaga gingivalis ATCC 33624]
 gi|228275628|gb|EEK14405.1| tyrosine recombinase XerD [Capnocytophaga gingivalis ATCC 33624]
          Length = 301

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 100/316 (31%), Positives = 168/316 (53%), Gaps = 33/316 (10%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT----EEKITIQTIRQLSY 68
           +LLK+ +++L+   IERG+S  ++QSY  D  +   ++  +      E I+ +T+R+  Y
Sbjct: 8   KLLKDFEHYLK---IERGMSPNSVQSYLFDLEKLSDYINLHQIEERPENISAETLREFVY 64

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
                    ++++++  RS  R +S +KSF KYL       +  +  +   K    LP  
Sbjct: 65  ---------QQSKELQARSQSRLISSLKSFFKYLLLENYREDFPMEYIDTPKYGMKLPDT 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+ ++   L+  + L TS        RN AI+  LYGCGLR+SE ++L   ++  ++  +
Sbjct: 116 LSVEEIDALIAGIDLSTSE-----GHRNRAIIETLYGCGLRVSELVNLHLSDLFFEEGFI 170

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-----RGKPLNPGVF 243
           R+ GKGDK R+VP+    +K I  Y      ++    Q+  F  I     RGK L   + 
Sbjct: 171 RVLGKGDKQRLVPISEYTQKQINNYIQHQRKEVP---QVKEFTDIVFLNRRGKQLTRAMI 227

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              I+Q    +GL  + + HT RHSFATHLL NG +LR+IQ +LGH  ++TT+IYT+++ 
Sbjct: 228 FTIIKQTAAAIGLTKTISPHTFRHSFATHLLENGANLRAIQLMLGHESITTTEIYTHIDH 287

Query: 304 KNGGDWMMEIYDQTHP 319
                ++ ++ +  HP
Sbjct: 288 ----SYLSQVVNTYHP 299


>gi|149372373|ref|ZP_01891561.1| integrase [unidentified eubacterium SCB49]
 gi|149354763|gb|EDM43326.1| integrase [unidentified eubacterium SCB49]
          Length = 295

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/310 (31%), Positives = 165/310 (53%), Gaps = 33/310 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFL--AFYTEEKITIQTIRQLSYTEIRAFISK 77
           +++  L +ER  SK T+ +YE D   F  FL   F  E+ + +      +Y+ IR++I  
Sbjct: 5   SFIDYLLLERNYSKHTIVAYERDLETFFKFLKTTFSEEDPVNV------NYSMIRSWIVC 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q I +RS+ R +S +K++ K+L K K  T + +   ++LK S  +     E    T 
Sbjct: 59  LVEQGISNRSINRKVSSLKTYYKFLLKTKQITATPLAKHKSLKVSKKIQVPFYE----TE 114

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D V+    H T +  AR+  I+ L YG G+R +E +SL  +++   +  +++ GK +K 
Sbjct: 115 IDEVITLLDHPTDFKTARDKLIVALFYGTGMRRAELISLKLKDVDLAEGVVKVLGKRNKE 174

Query: 198 RIVPLLPSVRKAILEYYDL--------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           R++PLLPSV K++  Y             + L  N  L ++  +  + +N G F    ++
Sbjct: 175 RLIPLLPSVLKSVDLYLKFRKEIVVVDSDYLLLTNKGLKIYETLVYRLIN-GYFSTTSQK 233

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           +++        + H LRHSFATHLL+ G DL S++ +LGH  L++TQ+YT+    N    
Sbjct: 234 VKK--------SPHILRHSFATHLLNEGADLNSVKELLGHASLASTQVYTH----NSIAT 281

Query: 310 MMEIYDQTHP 319
           + E+Y +THP
Sbjct: 282 LKEVYRKTHP 291


>gi|127511704|ref|YP_001092901.1| tyrosine recombinase XerD [Shewanella loihica PV-4]
 gi|126636999|gb|ABO22642.1| tyrosine recombinase XerD [Shewanella loihica PV-4]
          Length = 303

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/302 (32%), Positives = 153/302 (50%), Gaps = 16/302 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L +L   +GLS  TLQ+Y  D   F  +L    ++  ++ +  Q    E+R +++ R
Sbjct: 15  EPFLDDLWAAKGLSDHTLQAYRSDLSHFDRYL---NKQGSSLLSTSQ---AEVRDYLALR 68

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++ F KYL  +K+     +  ++  K +  LP AL+E      V
Sbjct: 69  VEHGFAKTSSARLLSSLRRFYKYLLAKKLIEVDPMAMIKPPKLARKLPDALSEAD----V 124

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D +L   + E   ++AR+ A+L LLY  GLR+SE + LT   +   Q  +RI GKG K R
Sbjct: 125 DRLLSEPNREDP-VEARDRAMLELLYASGLRVSELVGLTLDQMSLRQGVVRIVGKGSKER 183

Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP        I +Y     F+L        +F   RG  +    F   I+   +  G+ 
Sbjct: 184 LVPFGEQAGAEIEDYLKAARFELLKGKASDVVFPSKRGNMMTRQTFWHRIKLYAQRAGIA 243

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           +  + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + +++   
Sbjct: 244 VHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKAR----LAQLHQAH 299

Query: 318 HP 319
           HP
Sbjct: 300 HP 301


>gi|257089964|ref|ZP_05584325.1| phage integrase [Enterococcus faecalis CH188]
 gi|312903388|ref|ZP_07762568.1| tyrosine recombinase XerC [Enterococcus faecalis TX0635]
 gi|256998776|gb|EEU85296.1| phage integrase [Enterococcus faecalis CH188]
 gi|310633264|gb|EFQ16547.1| tyrosine recombinase XerC [Enterococcus faecalis TX0635]
 gi|315577626|gb|EFU89817.1| tyrosine recombinase XerC [Enterococcus faecalis TX0630]
          Length = 299

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/322 (30%), Positives = 159/322 (49%), Gaps = 28/322 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ME  N PE+ +  L+           +ERG S+ T ++Y+ D + F  FL   T      
Sbjct: 1   MEEKNWPELFARYLI-----------VERGYSEKTKKAYQEDIQHFFSFLK--TSGNDNY 47

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            T+  L   ++RA++S+   Q+    S+ R ++ ++SF ++  K +   E+    +   K
Sbjct: 48  LTVEHL---DVRAYLSELYDQEYSRNSISRKIASLRSFYQFSLKNEAIQENPFSYVHMKK 104

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K   LPR   EK+      + L  ++     +D RN A+L +LYG G+R+SE  +LT   
Sbjct: 105 KQLRLPRFFYEKEM-----DALFESAQGEHPLDLRNQALLEVLYGTGIRVSECANLTVDA 159

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKP 237
           +    S L + GKG+K R VP     + A+ +Y +     L    Q     +F    G+ 
Sbjct: 160 VDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQ 219

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           + P   +  + QL +   L      H LRH+FATHLL+NG D+R++Q +LGH  LSTTQI
Sbjct: 220 ITPTGIEYVLNQLIKKSSLNAEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQI 279

Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319
           Y +V  ++    + + Y   HP
Sbjct: 280 YAHVTKES----LQKNYRTFHP 297


>gi|78067906|ref|YP_370675.1| site-specific tyrosine recombinase XerC [Burkholderia sp. 383]
 gi|77968651|gb|ABB10031.1| Tyrosine recombinase XerC [Burkholderia sp. 383]
          Length = 306

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 166/318 (52%), Gaps = 33/318 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L NL+  R LS+ TL+ Y  +  +         ++    + +  L+  ++R  +++  +
Sbjct: 9   YLSNLKHVRQLSEHTLRGYTHELDEL--------KKLANGRPLEALTAADMRGAVARAHS 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS+   LS  ++F ++L +R     + +  +R  K++ +LP+AL+   A  L++ 
Sbjct: 61  GGLSARSISHRLSAWRAFYRWLAQRIEMPANPVAAVRAPKRAKTLPKALSVDDASALMNA 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTLR 189
            L +T+        R+ AIL L Y  GLR++E + L       D           ++ + 
Sbjct: 121 PLANTTEGI-----RDHAILELFYSSGLRLAELIGLDVMYTQADGYRSAGWLDLAEAEVT 175

Query: 190 IQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           ++GKG+K R VP+    RKAI  L  +     +   +   PLF  +RG  ++PGV +  +
Sbjct: 176 VRGKGNKERKVPV---GRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMSPGVVRERV 232

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  +S TQ+YT+++ ++  
Sbjct: 233 KRAALTAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYTSLDFQH-- 290

Query: 308 DWMMEIYDQTHPSITQKD 325
             + +IYD  HP   ++D
Sbjct: 291 --LAKIYDSAHPRAKKRD 306


>gi|295399051|ref|ZP_06809033.1| tyrosine recombinase XerD [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294978517|gb|EFG54113.1| tyrosine recombinase XerD [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 299

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 161/306 (52%), Gaps = 16/306 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E +++L  L +ER L+K T+ SYE D +++    A Y      IQ+   +S   I  F+ 
Sbjct: 5   ELKDFLHYLTVERNLAKNTIVSYERDLKKY----AHYLRHVEQIQSWNDVSRLHIMQFLK 60

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             + +    +++ R ++ I+SF ++L + KI  +   +++ + +   +LP+ L+ ++   
Sbjct: 61  FLKEKGSSPKTIARHIASIRSFHQFLLREKIADQDPSVHIESPQMERTLPKVLSLEEVEA 120

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L++    +T      I  R+ A++ LLY  G+R+SE ++L   ++      +R  GKG+K
Sbjct: 121 LLEAPKTNTP-----IGIRDKAMIELLYATGMRVSELVNLNLSDVHLTMGFVRCYGKGNK 175

Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRY 253
            RIVP+      A+  Y +   P  +N   +    LF    G  L    F + +++L + 
Sbjct: 176 ERIVPVGSMALDALKAYLETARPKLINPKKRTTDALFLNHYGDRLTRQGFWKILKKLAKE 235

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V      D    +
Sbjct: 236 ANIEKELTPHTLRHSFATHLLENGADLRAVQELLGHADISTTQIYTHVTKTRLKD----V 291

Query: 314 YDQTHP 319
           Y Q HP
Sbjct: 292 YKQFHP 297


>gi|149913845|ref|ZP_01902377.1| tyrosine recombinase XerD [Roseobacter sp. AzwK-3b]
 gi|149812129|gb|EDM71960.1| tyrosine recombinase XerD [Roseobacter sp. AzwK-3b]
          Length = 323

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 165/333 (49%), Gaps = 38/333 (11%)

Query: 15  LKERQNW----LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           +++ ++W    L+    E G ++ TLQ+Y  D   F  +LA   +      TI Q   + 
Sbjct: 1   MRQGRHWISAFLEAQAAELGAAQNTLQAYARDLSDFDAWLASQGD------TIEQADQSR 54

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           + A++     Q +   +  R LS IK   ++  + ++  ++  + ++   +S  LP+ L+
Sbjct: 55  VEAYLVHCDAQGLARATRARRLSAIKQLYRFAFEERLRDDNPAITIKGPGRSRKLPKTLS 114

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           EK+   L+     H    T  +  RN+ ++ LLY  G+R+SE ++L       +   L I
Sbjct: 115 EKEVDLLLGAARTHGRSATDRV--RNTCLMELLYATGMRVSELVALPVAAARGNPQMLLI 172

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF------- 243
           +GKG K R+VPL P  R  ++E+       L L           GKP +P +F       
Sbjct: 173 RGKGGKERMVPLSPDARDVMVEW-------LKLRDAADAAARKAGKPGSPFLFPSSGKIG 225

Query: 244 ----QRY---IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                R+   I++L    G+ P   T HTLRH+FATHLL+NG DLR+IQ++LGH  ++TT
Sbjct: 226 HLTRHRFYMLIKELAVAGGVSPDKVTPHTLRHAFATHLLANGADLRAIQTLLGHADVATT 285

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           +IYT+V  +     + E+  + HP      +K+
Sbjct: 286 EIYTHVLEER----LRELVQEHHPLAVASRRKS 314


>gi|254521772|ref|ZP_05133827.1| tyrosine recombinase XerC [Stenotrophomonas sp. SKA14]
 gi|219719363|gb|EED37888.1| tyrosine recombinase XerC [Stenotrophomonas sp. SKA14]
          Length = 296

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/310 (30%), Positives = 160/310 (51%), Gaps = 21/310 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +LQ+L++ER +S  TL +Y  D    L  L+ + E +     +  L    +R F++  
Sbjct: 5   QAFLQHLQVERRMSAHTLDAYRRD----LDALSVWAEPRGM--AVEALDAETLRQFVADE 58

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +  +SL+R LS  +SF  +L K      S    ++  +    LP+ L+  +A+ LV
Sbjct: 59  HRRGLSAKSLQRRLSACRSFYAWLLKHGRIEVSPAATLKAPRAPRRLPQVLDADEAVQLV 118

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +   L    E   +  R+ A+L L Y  GLR+SE  +LT +++      + + GKG++ R
Sbjct: 119 E---LEPEGE---LGRRDRALLELFYSSGLRLSEVCALTWRDLDFASGLVNVMGKGNRQR 172

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            VP     R+A+  +      +       P+F G R  P++    Q  IRQL +  GL  
Sbjct: 173 RVPFGRPAREALQAWR----AESGGGPASPVFPG-RNGPISQRAVQIRIRQLAQRQGLFK 227

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRHSFA+H+L + GDLR +Q +LGH  ++TTQIYT+++ ++    + ++YD  H
Sbjct: 228 HVHPHMLRHSFASHILESSGDLRGVQELLGHADIATTQIYTHLDFQH----LAKVYDAAH 283

Query: 319 PSITQKDKKN 328
           P   ++ K +
Sbjct: 284 PRAKRRSKGD 293


>gi|161526251|ref|YP_001581263.1| site-specific tyrosine recombinase XerC [Burkholderia multivorans
           ATCC 17616]
 gi|189349035|ref|YP_001944663.1| site-specific tyrosine recombinase XerC [Burkholderia multivorans
           ATCC 17616]
 gi|160343680|gb|ABX16766.1| tyrosine recombinase XerC [Burkholderia multivorans ATCC 17616]
 gi|189333057|dbj|BAG42127.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
          Length = 306

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 162/318 (50%), Gaps = 33/318 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L NL+  R LS+ TL++Y  +  +     A         + +  L   +IR  +++   
Sbjct: 9   YLSNLKYVRQLSEHTLRAYTHELDELKKLAAG--------RPLDTLVAADIRGAVARAHA 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS+   LS  ++F ++L +R     + +  +R  K+  +LP+AL+   A  L+D 
Sbjct: 61  GGLSARSISHRLSAWRAFYRWLAQRVEMPANPVAAVRAPKRPKTLPKALSVDDASALMDA 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT----------PQNIMD-DQSTLR 189
            L  T+        R+ AIL L Y  GLR++E + L               +D  ++ + 
Sbjct: 121 PLADTTEGI-----RDHAILELFYSSGLRLAELIGLDVAYTQTGDYRSAGWLDLAEAEVT 175

Query: 190 IQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           ++GKG+K R VP+    RKAI  L  +     +   +   PLF  +RG  ++PGV +  +
Sbjct: 176 VRGKGNKERKVPV---GRKAIDALNAWLAVRGEFVKHDPHPLFLSVRGNRMSPGVVRERV 232

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++     G+P     H LRHSFATH+L + GDLR++Q +LGH  +S TQ+YT+++ ++  
Sbjct: 233 KRAALAAGIPAHVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYTSLDFQH-- 290

Query: 308 DWMMEIYDQTHPSITQKD 325
             + +IYD  HP   ++D
Sbjct: 291 --LAKIYDSAHPRAKKRD 306


>gi|227510303|ref|ZP_03940352.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
 gi|227189955|gb|EEI70022.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
          Length = 295

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 160/303 (52%), Gaps = 19/303 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L +ERGLS+ T++SY+ D  + + F    T++   +     L+Y E        +
Sbjct: 7   DYLHFLRVERGLSENTIKSYQQDLSEAIHFFQKTTKDISKVDQFLILNYLE------NLQ 60

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +K    ++ R++S +++F +YL +  +  +  +L + + K+S +LP  L+  +      
Sbjct: 61  QEKKSRNTVIRTVSSLRNFFRYLAQFGVVPDDPMLKVDSPKQSKTLPDVLSVSEV----- 115

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           N LL   + +K +  R+ A+L  LY  GLR+SE ++L   ++      ++  GKGD+ RI
Sbjct: 116 NKLLSMPNVSKPLGVRDRAMLETLYATGLRVSELVNLRLVDLHLPMKLIQTVGKGDRERI 175

Query: 200 VPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +P+       I +Y      DL     N    +F    G+ L      + I++  +  G+
Sbjct: 176 IPIGDVAIDWITKYLKTTRIDLLRKRTNTDF-VFLNAHGRRLTRQAIWQMIKKYVKLAGI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               T HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT+++ K+    + E+Y +
Sbjct: 235 KRHVTPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHISHKH----LTEVYQK 290

Query: 317 THP 319
            HP
Sbjct: 291 FHP 293


>gi|304389803|ref|ZP_07371762.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315657108|ref|ZP_07909992.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|304326979|gb|EFL94218.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315492211|gb|EFU81818.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 323

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 102/330 (30%), Positives = 159/330 (48%), Gaps = 20/330 (6%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY-TEEKIT 59
           M  NN   + + E+  +   WL    + RGLS  T+++Y  D R+ + FL    + +   
Sbjct: 1   MSENNPAAVFAREITADFGQWL---SVNRGLSPQTVRAYLTDLRELMTFLVDSDSGDGPA 57

Query: 60  IQTIRQ--LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
            Q +R    +   IRA++       +   +L R ++  ++F  + + R I       N+R
Sbjct: 58  AQQLRADLANPARIRAWLGAMSRAGMSRATLARRVASFRTFASWAQVRGIVPGDAGQNLR 117

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW----IDARNSAILYLLYGCGLRISEA 173
             +  N+LP  L+   A  L++        E       +  R+ A L LLY  G+R+SE 
Sbjct: 118 ASRPDNALPTVLSATDAAHLLETARAAAYPEASTAPNPVKLRDWAALELLYATGIRVSEL 177

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----L 229
             L   NI   Q T+R+ GKGDK R+VP       A+ EY +     L +N + P    +
Sbjct: 178 TGLELGNINKSQRTVRVTGKGDKQRVVPYGIPAGLALEEYLEKGRPAL-VNPEKPALNRV 236

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F G +G  L+  + +  + +L    G+P     H LRH+ ATHLL  G DLRS+Q ILGH
Sbjct: 237 FLGAKGGMLDTRIVRGMLHRLTAQAGVP-DLGPHGLRHTAATHLLDGGADLRSVQEILGH 295

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
             L+TTQ YT+++     D +  +Y Q HP
Sbjct: 296 ASLATTQRYTHLSM----DKLRAVYLQAHP 321


>gi|197116868|ref|YP_002137295.1| site-specific recombinase, XerC [Geobacter bemidjiensis Bem]
 gi|197086228|gb|ACH37499.1| site-specific recombinase, XerC [Geobacter bemidjiensis Bem]
          Length = 293

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 105/310 (33%), Positives = 149/310 (48%), Gaps = 31/310 (10%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E + +   LE ER +S  TL +Y  D  QFL FLA   E         ++ +  IR +++
Sbjct: 4   ELEQFYSYLETERNVSPHTLAAYRSDLEQFLSFLARERE----APRAEEVDHLAIRRYLA 59

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           +   +     S+ R LS I++  +YL +     ++    +   KK   LP  LN  Q   
Sbjct: 60  QLH-KGCAKSSIGRKLSAIRALFRYLMREGKLEKNPAELVSTPKKEKRLPFHLNIDQVSA 118

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTL-RIQGK 193
           LV          +  +  R+ A+L  LY CG+R+SE   LT  N+  MD  + L R+ GK
Sbjct: 119 LVT-----APAGSSGLPLRDRAVLETLYSCGIRVSE---LTGMNVGDMDLAAGLARVMGK 170

Query: 194 GDKIRIVPLLPSVRKAILEY----YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           G K R+VP+    R A+  Y     D  P +       PL    RG  L      R +  
Sbjct: 171 GGKERLVPVGSCARSALAAYLAERADPGPAE-------PLILNARGGRLTRRSVARIVDA 223

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
               +      + HTLRH+FATHLL  G DLR+IQ +LGH  LSTTQ YT+V+     D 
Sbjct: 224 HMLLIAAMRKVSPHTLRHTFATHLLEGGADLRAIQELLGHASLSTTQKYTHVSI----DK 279

Query: 310 MMEIYDQTHP 319
           +ME+YD+ HP
Sbjct: 280 LMEVYDKAHP 289


>gi|257095701|ref|YP_003169342.1| tyrosine recombinase XerC [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257048225|gb|ACV37413.1| tyrosine recombinase XerC [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 304

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/307 (31%), Positives = 159/307 (51%), Gaps = 20/307 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L  +R LS  T+ +Y  D       +     E  +      +    IR F++   T
Sbjct: 13  YLDELAGQRRLSPHTVSNYRHDLETLCALIG----ELPSDSGFAAIETHHIRRFVAILHT 68

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +G RSL R+LS  + F ++L +R +TT + + ++R  K    LP+AL+  +A     N
Sbjct: 69  RGLGGRSLGRTLSAWRGFYRWLVQRGMTTLNPVDSVRPPKSPKGLPKALSPDEA-----N 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRI 199
            LL    E   ++ R+ AI  L Y  GLR++E  +L    + D     +R+ GK +K+RI
Sbjct: 124 RLLAAQSEN-LLEIRDQAIFELFYSSGLRLAELAALDIGCLEDLLAGEVRVLGKRNKLRI 182

Query: 200 VPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           VP+    R+A+  +     C   L    +  LF G RG+ L   + Q  + +  R  GLP
Sbjct: 183 VPVGSQAREAVALWAGQRAC---LAAADETALFVGQRGRRLGVRMIQLRLLRRGRAQGLP 239

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRHSFA+H+L + GDLR++Q +LGH  +++TQ+YT+++ ++    +  +YDQ 
Sbjct: 240 ARVHPHMLRHSFASHVLQSSGDLRAVQEMLGHASIASTQVYTHLDFQH----LAAVYDQA 295

Query: 318 HPSITQK 324
           HP   +K
Sbjct: 296 HPRAKRK 302


>gi|237746680|ref|ZP_04577160.1| site specific integrase/recombinase [Oxalobacter formigenes HOxBLS]
 gi|229378031|gb|EEO28122.1| site specific integrase/recombinase [Oxalobacter formigenes HOxBLS]
          Length = 326

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/327 (30%), Positives = 160/327 (48%), Gaps = 29/327 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  L  +R LS  TL SY  D  Q          E      + +LS T+IR F+S+ 
Sbjct: 12  KSYLDTLSGQRKLSGNTLDSYRRDLAQL--------TEMAGETGLNRLSSTDIRRFVSRL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +  RS+ R LS  + F ++L    + + +   ++   KKS  LP+AL+   A+ LV
Sbjct: 64  HASGLSPRSIGRKLSAWRGFFQWLVDEALLSTNPAEDIHAPKKSKPLPKALSVDDAVRLV 123

Query: 139 DNVLLHTSHETKWIDAR--NSAILYLLYGCGLRISEALSLTPQNIMD-----------DQ 185
            +    T+  +    A   + A+  LLY  GLR+SE   L  Q +             ++
Sbjct: 124 SSGPADTNASSAGQAAALCDRAMFELLYSSGLRVSELTGLDIQAVRQAGYVSAGWIDLNE 183

Query: 186 STLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
             + + GKG+K RIVP     + +VR  +    +L   +        LF   RGK ++P 
Sbjct: 184 KEVTVTGKGNKTRIVPAGDAAITAVRNWLAARDNLVHPEALPRDAFALFVNSRGKRISPR 243

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             Q  ++   + LGLP++   H LRHSFA+H+L + GDLR++Q +LGH  +++TQIYT +
Sbjct: 244 QVQLRLKAHAKRLGLPVNVHPHVLRHSFASHILQSSGDLRAVQEMLGHSSIASTQIYTAL 303

Query: 302 NSKNGGDWMMEIYDQTHPSITQKDKKN 328
           + ++    +  +YD  HP    K   N
Sbjct: 304 DFQH----LAAVYDSAHPRAKTKKSGN 326


>gi|312797553|ref|YP_004030475.1| integrase/recombinase (XerC/CodV family) [Burkholderia rhizoxinica
           HKI 454]
 gi|312169328|emb|CBW76331.1| Integrase/recombinase (XerC/CodV family) [Burkholderia rhizoxinica
           HKI 454]
          Length = 312

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 100/323 (30%), Positives = 163/323 (50%), Gaps = 43/323 (13%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L  ER LS  TL+ Y  +    L  LA   E       + QL+  ++R  +S+  +
Sbjct: 11  YLDSLAHERRLSAHTLRGYAHEL-DMLRQLAGTRE-------LTQLTPVDVRGAVSRAHS 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS+   LS  +SF ++L   +  T + +  +R  K++ +LP+AL+   A+TL++ 
Sbjct: 63  GGLSPRSIAHRLSVWRSFYRWLALHQPLTMNPVAGVRAPKRAKTLPKALSVDDAVTLMEA 122

Query: 141 VLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQ-----------STL 188
             + T       DA R+ A+L L Y CGLR++E + L    +   Q           + +
Sbjct: 123 SCIETP------DALRDRAMLELFYSCGLRLAELIGLDIAFVNTAQYRSVGWIDLGTADV 176

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL------PLFRGIRGKPLNPGV 242
            + GKG K R VP+      A+  +       L +  QL      PLF   RG  ++ GV
Sbjct: 177 TVLGKGGKRRTVPIGSKALDALHRW-------LAVRDQLLKHDPHPLFLSARGMRMSAGV 229

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +  +R+     G+P     H LRHSFATHLL + GDLR++Q +LGH  ++ TQ+YT+++
Sbjct: 230 VRERVRRAALAAGVPSHVHPHVLRHSFATHLLQSSGDLRAVQELLGHASVAATQVYTSLD 289

Query: 303 SKNGGDWMMEIYDQTHPSITQKD 325
            ++    +  IYDQ HP   ++D
Sbjct: 290 FQH----LARIYDQAHPRAKKRD 308


>gi|15678913|ref|NP_276030.1| integrase-recombinase protein [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|73920472|sp|O26979|XERCL_METTH RecName: Full=Probable tyrosine recombinase xerC-like
 gi|2621988|gb|AAB85391.1| integrase-recombinase protein [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 311

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 157/308 (50%), Gaps = 34/308 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA----FYTEE 56
           +E  N PE++        +++L  LEI R  S  T+++Y+   + F  FL      Y + 
Sbjct: 18  LERYNFPELI--------EDYLIELEI-RNYSPNTIKTYKSIVKNFYEFLMNEDDLYDDR 68

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           ++     R + Y         +R +K+    +      +K F ++      +    +  +
Sbjct: 69  RVLRSFKRYIQYL--------KRDKKVTQNYIYLVTVVVKKFFEF------SGIDCLEEV 114

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHET--KWIDARNSAILYLLYGCGLRISEAL 174
           +  K++ SLP++LNE +  +L++ V +        ++I  R+  IL LLY  GLR+SE +
Sbjct: 115 KAPKRTKSLPKSLNEDEVKSLINAVEVADDGSVIRRFIKTRDRLILSLLYSSGLRVSELV 174

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           SL   +I  D+ T+RI+GKGDK RIV    + R  +++Y         ++    LF    
Sbjct: 175 SLRINDIDPDERTIRIRGKGDKDRIVLFDENTRDLLMDY-----LKRRIHESEYLFLNRF 229

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G PL P   Q  I+   R  G+    T H LRHSFATHLL NG D+R+IQ +LGH  LST
Sbjct: 230 GDPLTPRYVQMMIKNYARKAGIKKKVTPHILRHSFATHLLKNGVDIRAIQQLLGHSNLST 289

Query: 295 TQIYTNVN 302
           TQIYT+V+
Sbjct: 290 TQIYTSVD 297


>gi|255026410|ref|ZP_05298396.1| hypothetical protein LmonocytFSL_08880 [Listeria monocytogenes FSL
           J2-003]
          Length = 290

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 155/292 (53%), Gaps = 23/292 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  L +ERGLS  T+++YE D   F+ ++    E    +     L  ++I  F++  
Sbjct: 6   EDFLHFLIVERGLSANTIKAYERDLHYFVSYMDVTKE----LTDPNTLERSDIVGFMAFA 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R +    RS+ R ++ ++SF  YL      +   ++ +   K++  LP+ LN       +
Sbjct: 62  RQEGKSPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAKGLPKVLN-------L 114

Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           D+V  LL +S  +  +  R+ A++ +LY  GLR++E +SL   ++      ++  GKGDK
Sbjct: 115 DDVEKLLSSSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDK 174

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI------RGKPLNPGVFQRYIRQL 250
            RI+PL  +    + +Y +    +    ++ P +R         G+ L    F + ++ +
Sbjct: 175 ERIIPLGKTATTVLEKYLE----EARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGI 230

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +  G+    T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT+V 
Sbjct: 231 AKESGIEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVT 282


>gi|193212222|ref|YP_001998175.1| integrase family protein [Chlorobaculum parvum NCIB 8327]
 gi|254799328|sp|B3QM22|XERC_CHLP8 RecName: Full=Tyrosine recombinase xerC
 gi|193085699|gb|ACF10975.1| integrase family protein [Chlorobaculum parvum NCIB 8327]
          Length = 336

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 102/327 (31%), Positives = 169/327 (51%), Gaps = 39/327 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQTIRQLSYTEIRAFISK 77
           + +L +L+  R +S  T+ +Y CD  Q+  FL      +++      ++   ++R F+  
Sbjct: 21  EPFLSHLQAARNVSPKTVTAYRCDLLQYFSFLKEQAGLDRLEAVEPERVEVADVRLFMGH 80

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + I  RS+ R L+ +KSF ++L +    + S +  +   +    +PR ++E++A  L
Sbjct: 81  LLDKGIQPRSIARKLASVKSFYRFLLETGRISSSPLSLVVTPRLDKKVPRFVSEEEARQL 140

Query: 138 V-------DNVLLH---TSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
                   DN  L       E +  +  R+ A+L +LYGCGLR+SE ++L   ++     
Sbjct: 141 FRRFESQEDNAALQGDGKKAEVRQFETFRDRAVLEVLYGCGLRLSELIALERADVDLVHG 200

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPL---------FRGIRGK 236
            L++ GKG K RIVPL     +A+ +Y     F++  N  ++PL         F   RG+
Sbjct: 201 FLKVTGKGRKQRIVPLGEPAVEALRKY-----FEVRRNFFRIPLERTGESSRVFVTSRGR 255

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTT----AHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
            L P + QR  +   RYL  P+S +     H LRHSFATH+L+ G DL+S+  +LGH  L
Sbjct: 256 QLYPMLVQRMTK---RYL-TPVSESEKKNPHILRHSFATHMLNGGADLKSVSEMLGHSSL 311

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHP 319
           +TT++YT+V        + EIYD+ HP
Sbjct: 312 TTTELYTHVTFSR----LKEIYDKAHP 334


>gi|149181661|ref|ZP_01860154.1| site-specific tyrosine recombinase XerD [Bacillus sp. SG-1]
 gi|148850639|gb|EDL64796.1| site-specific tyrosine recombinase XerD [Bacillus sp. SG-1]
          Length = 297

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 161/306 (52%), Gaps = 21/306 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q+++  L +E+GL+K ++ SY+ D + ++ F+    +   + ++   +    I  F+   
Sbjct: 6   QDYIHFLIVEKGLAKNSVDSYQRDLKNYMKFI----QNVDSAESWNDVQRVNITGFLGHL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + +    +++ R ++ I+SF ++L + K+T +   +++ + K   SLP+ L+       +
Sbjct: 62  KNEGKSAKTVARHVASIRSFHQFLLREKVTDQDPSIHIESPKMERSLPKVLS-------I 114

Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           D V  LL    E+  +  R+ A+L +LY  G+R+SE + L   ++      +R  GKG+K
Sbjct: 115 DEVEALLEAPQESSALGIRDKAMLEVLYATGIRVSELIRLKMDDVHLKMGFVRCIGKGNK 174

Query: 197 IRIVPLLPSVRKAILEYYDL---CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            RI+P+  +    +LE Y L          +    LF    GK L+   F + ++ L   
Sbjct: 175 ERIIPIGKAA-ITVLEKYLLEGRPKLVSKKHKDDSLFLNHHGKGLSRQGFWKILKGLAAE 233

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        M ++
Sbjct: 234 AKITKELTPHTLRHSFATHLLENGADLRAVQEMLGHVDISTTQIYTHVTKTR----MKDV 289

Query: 314 YDQTHP 319
           Y + HP
Sbjct: 290 YSKFHP 295


>gi|15615028|ref|NP_243331.1| integrase/recombinase [Bacillus halodurans C-125]
 gi|34223073|sp|Q9KA25|XERC_BACHD RecName: Full=Tyrosine recombinase xerC
 gi|10175085|dbj|BAB06184.1| integrase/recombinase [Bacillus halodurans C-125]
          Length = 303

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/304 (32%), Positives = 154/304 (50%), Gaps = 19/304 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L++E+  S  T+ +YE D R F  F+     E+ +I +   +SY  +R +++    
Sbjct: 12  FLLYLKMEKNHSPHTIVNYELDLRHFRDFM-----EQQSIPSFAAVSYAFVRHYLTVLYE 66

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q+    ++ R LS ++SF ++L + K   E+  L     K    LP  L E++   L+D 
Sbjct: 67  QEYARSTVSRKLSTLRSFYQFLVREKWVMENPFLLAHTPKGVKKLPSFLYEEEMEQLLDA 126

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +     +    +  RN A+   +Y  GLR+SE   L  Q++     T+ + GKG K R V
Sbjct: 127 L-----NGDSPLQLRNRALFETIYASGLRVSECCGLKLQDVDLSIGTVFVFGKGRKERYV 181

Query: 201 PLLPSVRKAILEYYDLCPFDL---NLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           P+      AI EY +     L   + ++ LP  LF   RG PL     ++ + Q      
Sbjct: 182 PIGSFACDAIQEYIENGREKLLKKSKSVDLPGDLFLNYRGGPLTERGVRKILHQALDQAA 241

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L    + H+LRHSFATHLL+NG DLR +Q +LGH  LSTTQ+YT+V      D + ++Y 
Sbjct: 242 LSTRVSPHSLRHSFATHLLNNGADLRVVQDLLGHENLSTTQVYTHVTK----DRLRDVYR 297

Query: 316 QTHP 319
             HP
Sbjct: 298 THHP 301


>gi|229824242|ref|ZP_04450311.1| hypothetical protein GCWU000282_01546 [Catonella morbi ATCC 51271]
 gi|229786596|gb|EEP22710.1| hypothetical protein GCWU000282_01546 [Catonella morbi ATCC 51271]
          Length = 331

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 98/304 (32%), Positives = 157/304 (51%), Gaps = 15/304 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +LQ + +ER  S+ TL +Y+ D   F  F+     E      ++Q++Y ++R +++    
Sbjct: 37  FLQYISVERRYSQKTLAAYQQDLAAFQSFI-----ETSGGGDLKQIAYQDVRLYLAYLNE 91

Query: 81  QKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           Q     S++R LS ++SF  Y L +  I T    L    +KK  +LP+   E++   L D
Sbjct: 92  QAYAKTSIRRKLSSLRSFFTYCLSQGWIETNPMELVQYQVKK-KTLPQFFYEQELTQLFD 150

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           + L     +  W   R+  +L +LY  G+R+SE   L+ + +  +   +R+ GKG+K RI
Sbjct: 151 S-LYKREDDAAW---RDRMLLEVLYATGMRVSELSELSLERLNLEVQLIRVLGKGNKERI 206

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPL  S  +AI +Y       ++ N    L    +G P++P   +  ++ L     + L 
Sbjct: 207 VPLGDSATQAIRDYLSHLRPKIDRNNSPYLLLTDKGAPMSPRQIRTRLKSLVEEQAMNLK 266

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRHSFATHLL+ G DLR++Q +LGH  LS+TQIYT+V      D +   Y + HP
Sbjct: 267 IYPHKLRHSFATHLLNKGADLRTVQELLGHANLSSTQIYTHVTK----DQLRSQYLKAHP 322

Query: 320 SITQ 323
              Q
Sbjct: 323 RAKQ 326


>gi|294501141|ref|YP_003564841.1| tyrosine recombinase XerD [Bacillus megaterium QM B1551]
 gi|294351078|gb|ADE71407.1| tyrosine recombinase XerD [Bacillus megaterium QM B1551]
          Length = 297

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 98/306 (32%), Positives = 159/306 (51%), Gaps = 21/306 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q+++  L +ERGL+K T+ SYE D +++    A Y E    +++  +++   I  F+   
Sbjct: 6   QDFIHYLVVERGLAKNTIDSYERDLKKY----AQYLEHVEQLKSFNEVTRLHIVNFLKYL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q+   +++ R ++  +SF ++L + K       +++   +    LP+ LN ++     
Sbjct: 62  SDQQKSSKTIARHVASTRSFHQFLLREKAADTDPSVHIDTPQLERKLPKVLNAEEV---- 117

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL---RIQGKGD 195
              LL+    +     R+ A+L LLY  G+R+SE ++L   NI D   T+   R  GKG+
Sbjct: 118 -EALLNVFDTSTPFGIRDKAMLELLYATGIRVSELVNL---NIDDAHLTMGFIRCIGKGN 173

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K RIVP+     +AI EY       L    +    LF    G+ L    F + +++L   
Sbjct: 174 KERIVPIGRLATEAIEEYLQHSRSVLTKQKEQDKALFVNHHGRRLTRQGFWKILKKLASE 233

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        + ++
Sbjct: 234 AKIEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKAR----LKDV 289

Query: 314 YDQTHP 319
           Y+Q HP
Sbjct: 290 YNQFHP 295


>gi|312903284|ref|ZP_07762464.1| tyrosine recombinase XerD [Enterococcus faecalis TX0635]
 gi|310633160|gb|EFQ16443.1| tyrosine recombinase XerD [Enterococcus faecalis TX0635]
          Length = 296

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 96/304 (31%), Positives = 163/304 (53%), Gaps = 20/304 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L+IERGLS  T +SYE D ++++ FL     ++  + +  ++    I  F+    
Sbjct: 7   DYLHYLQIERGLSNNTRRSYERDLKKYVAFL-----QEQGLHSWDEVDRYMITEFLQSLH 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            ++    S+ R +S ++ F ++L++ +++  + + ++ + KK   LP  L+       VD
Sbjct: 62  EEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLS-------VD 114

Query: 140 NV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            V  L+ T   +K +  RN AIL ++Y  GLR+SE + +   ++      L+  GKGDK 
Sbjct: 115 EVTRLIETPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKE 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           RI+PL     + I  Y +     L  N   +  LF    G+PL+     + ++++ R   
Sbjct: 175 RIIPLGDYAIQWIERYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKRIVREAR 234

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + T HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT++  +     M ++Y 
Sbjct: 235 IEKNITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQR----MADVYK 290

Query: 316 QTHP 319
           +  P
Sbjct: 291 EHFP 294


>gi|239827607|ref|YP_002950231.1| site-specific tyrosine recombinase XerD [Geobacillus sp. WCH70]
 gi|239807900|gb|ACS24965.1| tyrosine recombinase XerD [Geobacillus sp. WCH70]
          Length = 299

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 95/306 (31%), Positives = 161/306 (52%), Gaps = 16/306 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E +++L  L +ER L+K T+ SYE D +++    A Y      IQ+   ++   I  F+ 
Sbjct: 5   ELKDFLHYLTVERNLAKNTIISYERDLKKY----AHYLRHVEQIQSWNDVTRLHIMQFLK 60

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             + +    +++ R ++ I+SF ++L + K+  +   +++ + +   +LP+ L+ ++   
Sbjct: 61  FLKEKGNSPKTIARHIASIRSFHQFLLREKVAEQDPSVHIESPQMERTLPKVLSLEEVEA 120

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L++    +T      I  R+ A+L LLY  G+R+SE ++L   ++      +R  GKG K
Sbjct: 121 LLEAPKTNTP-----IGVRDKAMLELLYATGMRVSELVNLNLSDVHLTMGFVRCYGKGKK 175

Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRY 253
            RIVP+      A+  Y +   P  +N   +    LF    G+ L    F + +++L + 
Sbjct: 176 ERIVPVGSMALNALKVYLETARPKLINSKKRTTDALFLNHHGERLTRQGFWKILKKLAKE 235

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V      D    +
Sbjct: 236 ANIEKELTPHTLRHSFATHLLENGADLRAVQELLGHADISTTQIYTHVTKTRLKD----V 291

Query: 314 YDQTHP 319
           Y Q HP
Sbjct: 292 YKQYHP 297


>gi|167835019|ref|ZP_02461902.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis
           MSMB43]
          Length = 306

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 161/319 (50%), Gaps = 33/319 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L NL   R LS  TL++Y  +  +         ++    + +  L+  ++R  +++  
Sbjct: 8   DYLSNLRHVRKLSDHTLRAYAHELDEL--------KKLANGRPLESLTAVDMRGAVARAH 59

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +  RS+   LS  ++F ++  +      + +  +R  K + +LP+AL+   A  L+D
Sbjct: 60  AGGLSARSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKHAKTLPKALSVDDAAALMD 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTL 188
                T+      + R+ AIL L Y  GLR++E + L  +   D            ++ +
Sbjct: 120 APTAGTAE-----NLRDHAILELFYSSGLRLAELIGLDIEYAKDGDYRSEGWLDLAEAEV 174

Query: 189 RIQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            ++GKGDK R VP+    RKAI  L  +     +       PLF  +RG  ++PGV +  
Sbjct: 175 TVRGKGDKERKVPV---GRKAIDALNAWLAVRGEFVKRDPRPLFLSVRGNRMSPGVVRER 231

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  +S TQ+YT+++ ++ 
Sbjct: 232 VKRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQH- 290

Query: 307 GDWMMEIYDQTHPSITQKD 325
              + +IYD  HP   ++D
Sbjct: 291 ---LAKIYDSAHPRAKKRD 306


>gi|304315042|ref|YP_003850189.1| site-specific recombinase/integrase [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588501|gb|ADL58876.1| predicted site-specific recombinase/integrase [Methanothermobacter
           marburgensis str. Marburg]
          Length = 311

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 105/309 (33%), Positives = 156/309 (50%), Gaps = 36/309 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA----FYTEE 56
           +E  N PE++        +++L  LEI R  S  T+++Y    + F  FL      Y + 
Sbjct: 18  LERYNFPELI--------EDYLVELEI-RNYSPNTIKTYRSIVKNFYEFLMEEDDLYDDR 68

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-N 115
           ++     R + Y         +R + +    +      IK F ++       +E + L  
Sbjct: 69  RVLRSFKRYIQYL--------KRDKNVTQNYIYLVTVVIKKFFEF-------SEIDCLQE 113

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHT--SHETKWIDARNSAILYLLYGCGLRISEA 173
           ++  K++ SLP++LNE + + L++ V L    S   ++I  R+  IL LLY  GLR+SE 
Sbjct: 114 VKAPKRTKSLPKSLNEDEVMRLINAVELSDDGSPIKRFIKTRDRLILSLLYSSGLRVSEL 173

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
           +SL   +I     T+RI+GKGDK RIV    S R  ++EY         ++    LF   
Sbjct: 174 VSLKVNDIDMGDRTIRIRGKGDKDRIVLFDESTRDLLVEY-----LSRRIHESEYLFLNR 228

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            G PL P   Q  I+   R  G+    T H LRHSFATHLL NG D+R+IQ +LGH  LS
Sbjct: 229 FGDPLTPRYVQMMIKNYARKAGINKKVTPHILRHSFATHLLKNGVDIRAIQQLLGHSNLS 288

Query: 294 TTQIYTNVN 302
           TTQIYT+V+
Sbjct: 289 TTQIYTSVD 297


>gi|221201912|ref|ZP_03574949.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2M]
 gi|221207582|ref|ZP_03580590.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2]
 gi|221215807|ref|ZP_03588766.1| tyrosine recombinase XerC [Burkholderia multivorans CGD1]
 gi|221164343|gb|EED96830.1| tyrosine recombinase XerC [Burkholderia multivorans CGD1]
 gi|221172428|gb|EEE04867.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2]
 gi|221178332|gb|EEE10742.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2M]
          Length = 306

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 162/318 (50%), Gaps = 33/318 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L NL+  R LS+ TL++Y  +  +     A         + +  L   +IR  +++   
Sbjct: 9   YLSNLKHVRQLSEHTLRAYTHELDELKKLAAG--------RPLDTLVAADIRGAVARAHA 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS+   LS  ++F ++L +R     + +  +R  K+  +LP+AL+   A  L+D 
Sbjct: 61  GGLSARSISHRLSAWRAFYRWLAQRVEMPANPVAAVRAPKRPKTLPKALSVDDASALMDA 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT----------PQNIMD-DQSTLR 189
            L  T+        R+ AIL L Y  GLR++E + L               +D  ++ + 
Sbjct: 121 PLADTTEGI-----RDHAILELFYSSGLRLAELIGLDVAYTQTGDYRSAGWLDLAEAEVT 175

Query: 190 IQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           ++GKG+K R VP+    RKAI  L  +     +   +   PLF  +RG  ++PGV +  +
Sbjct: 176 VRGKGNKERKVPV---GRKAIDALNAWLAVRGEFVKHDPHPLFLSVRGNRMSPGVVRERV 232

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++     G+P     H LRHSFATH+L + GDLR++Q +LGH  +S TQ+YT+++ ++  
Sbjct: 233 KRAALAAGIPAHVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYTSLDFQH-- 290

Query: 308 DWMMEIYDQTHPSITQKD 325
             + +IYD  HP   ++D
Sbjct: 291 --LAKIYDSAHPRAKKRD 306


>gi|317401433|gb|EFV82066.1| integrase/recombinase [Achromobacter xylosoxidans C54]
          Length = 324

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 98/320 (30%), Positives = 155/320 (48%), Gaps = 27/320 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL++LE  R  S  TL  Y    R+     A     K+ ++   +L    IR F+++   
Sbjct: 17  WLRHLESNRRYSPHTLDGYR---RELGFLHALAERAKLPLE---RLGNGHIRQFVARLHA 70

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q  G RSL R+L+  + F ++         + +  +R  K   SLP+AL+ +Q   L+D 
Sbjct: 71  QGRGPRSLARTLAAWRGFYQWWAPAIGLAGNPVAGVRAPKAPRSLPKALSVEQTQALLDR 130

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMD---------DQSTLR 189
                + E   +  R+ A+  LLY  GLR+SE   L L      D         D++ + 
Sbjct: 131 APAKVATEPAAL--RDQAMFELLYSSGLRLSELVGLDLRYARSADYESRGWLNLDEAEVI 188

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCP----FDLNLNIQLPLFRGIRGKPLNPGVFQR 245
           + GKG K R VP+  +   A+  + +  P       + +    LF G RG+ ++P V Q 
Sbjct: 189 VLGKGGKRRSVPVGQAAVAALQRWIEARPQLAPPAASPSDAAALFLGARGRRISPRVVQL 248

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +  + +  GLP     H LRHSFA+H+L +  DLR++Q +LGH  +STTQIYT ++ ++
Sbjct: 249 QLAHVAQAAGLPTHVHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQIYTRLDFQH 308

Query: 306 GGDWMMEIYDQTHPSITQKD 325
               +   YDQ HP   +K 
Sbjct: 309 ----LARAYDQAHPRAGRKS 324


>gi|167917076|ref|ZP_02504167.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           BCC215]
          Length = 310

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 162/319 (50%), Gaps = 33/319 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L NL   R LS  TL++Y  +  +         +     + +  L+  ++R+ +++  
Sbjct: 12  DYLSNLRHVRKLSDHTLRAYAHELDEL--------KRLANGRPLDSLTAIDMRSAVARAH 63

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +  RS+   LS  ++F ++  +      + +  +R  K++ +LP+AL+      L+D
Sbjct: 64  AGGLSARSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDTAALMD 123

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTL 188
                T+        R+ AIL L Y  GLR++E + L  + + D            ++ +
Sbjct: 124 APTAGTAESL-----RDHAILELFYSSGLRLAELIGLDIEYVKDGAYRSAGWLDLAEAEV 178

Query: 189 RIQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            + GKGDK R VP+    RKA+  L  +     +L  +   PLF  +RG  ++PGV +  
Sbjct: 179 TVHGKGDKERKVPV---GRKALDALHAWLAVRGELVKHDPRPLFLSVRGNRMSPGVVRER 235

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  +S TQ+YT+++ ++ 
Sbjct: 236 VKRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQH- 294

Query: 307 GDWMMEIYDQTHPSITQKD 325
              + +IYD  HP   ++D
Sbjct: 295 ---LAKIYDSAHPRAKKRD 310


>gi|213963184|ref|ZP_03391442.1| tyrosine recombinase XerD [Capnocytophaga sputigena Capno]
 gi|213954268|gb|EEB65592.1| tyrosine recombinase XerD [Capnocytophaga sputigena Capno]
          Length = 303

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 98/311 (31%), Positives = 159/311 (51%), Gaps = 32/311 (10%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFY----TEEKITIQTIRQLSYTEIRAFISKRRT 80
           L ++RGLS+ T  SY  D  + + +L  Y    T   I   T+RQ  Y E+         
Sbjct: 13  LRLQRGLSQNTAVSYGLDIEKLICYLEKYNITETPNNIEEDTLRQFVY-EV--------A 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  RS  R +S +KSF K++   K   +  +  + + K    LP  L+ ++   ++ +
Sbjct: 64  KDLNARSQARLISALKSFFKFMMYEKGREDFPMSLIESPKIGVKLPDTLSLQEIDAMLAS 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           + L T         RN A++ +LY CGLR+SE +SL   ++  D+  +R+ GKG K R+V
Sbjct: 124 IDLSTDE-----GHRNKAMIEMLYACGLRVSELISLRLSDLFFDEDFIRVMGKGSKQRLV 178

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--------RGKPLNPGVFQRYIRQLRR 252
           P+    +K + +Y D      N   QL + +G         RGK L   +    +RQ+  
Sbjct: 179 PIEAYTQKQVKQYID------NQRRQLKIAKGHEDFVFLNRRGKQLTRAMIFTIVRQVAE 232

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            +GL  + + HT RHSFATHLL NG +LR+IQ +LGH  ++TT+IY +V      + +++
Sbjct: 233 NIGLQKTISPHTFRHSFATHLLENGANLRAIQMMLGHENITTTEIYVHVEKSYLREALIK 292

Query: 313 IYDQTHPSITQ 323
            + +   S TQ
Sbjct: 293 YHPRQKMSFTQ 303


>gi|325839425|ref|ZP_08166864.1| tyrosine recombinase XerD [Turicibacter sp. HGF1]
 gi|325490545|gb|EGC92861.1| tyrosine recombinase XerD [Turicibacter sp. HGF1]
          Length = 305

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 102/307 (33%), Positives = 166/307 (54%), Gaps = 17/307 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L +L I+RGLS  T  SYE D  ++L++L     +  ++  + ++    ++ ++    
Sbjct: 11  DFLAHLLIDRGLSLNTKISYERDLTEYLLYL-----QNQSVHQLDEIRREHVQQYLITLY 65

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +  +S+ R LS I+SF +YL   KI+      N   L +S  L R L E  ++  V+
Sbjct: 66  ERNLNTKSVARHLSAIRSFHQYLMIEKISNT----NPCELIESPKLKRHLPEILSIDEVE 121

Query: 140 NVLLHTSHETKWI-DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           ++L  +S  TK + D RN A++ L+Y  GLR+SE L L   ++      +R  GKGDK R
Sbjct: 122 HLL--SSFNTKTVNDIRNKAMVELMYASGLRVSELLQLKLDDVHLSMMFVRCVGKGDKER 179

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVP+     + +  Y D    +L       LF    G+ +    F + +++  +  G+  
Sbjct: 180 IVPIGEVATELLQLYLDTARPNLLKKSNDWLFLNRFGEVMTRQGFWKILKKQAKEAGIEK 239

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRHSFATHL+ NG DLR +Q +LGH  +STTQIYT+++ ++  D    +YD  H
Sbjct: 240 EISPHKLRHSFATHLIENGVDLRLVQEMLGHSDISTTQIYTHISKEHLKD----VYDLYH 295

Query: 319 PSITQKD 325
           P  +QKD
Sbjct: 296 PR-SQKD 301


>gi|83590344|ref|YP_430353.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC
           39073]
 gi|83573258|gb|ABC19810.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC
           39073]
          Length = 295

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 97/300 (32%), Positives = 153/300 (51%), Gaps = 15/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +ERGL++ TL SY  D +QFL++L     E   +++ R ++   + A++ K + 
Sbjct: 8   FLYYLVVERGLAENTLASYNSDLQQFLLYL-----EGAGVKSPRDVTRGLLVAYLVKMQQ 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                 ++ + L+ +KSF  +L + ++       ++ + ++S  LP+ L   +   L++ 
Sbjct: 63  DGRSPATISQHLAALKSFYHFLLRERLVESDPTADLESPRQSKKLPQVLTVAEVEKLLNQ 122

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
               T         R+ A+L LLY  GLR+SE +SL    +  +   +R  GKG K R+V
Sbjct: 123 PRTDTP-----AGLRDKAMLELLYATGLRVSELVSLNVDQVNLEGEFVRCLGKGSKERVV 177

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+       +  Y +     L      P LF    G+ L+     + ++   R   L   
Sbjct: 178 PMGQVACFYVRTYIENGRGKLIKRATEPALFVNHHGRRLSRQGCWKILKGYVRAANLKKD 237

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T HTLRHSFATHLL NG DLRS+Q +LGH  + TTQIYT++  K     + EIYD THP
Sbjct: 238 ITPHTLRHSFATHLLENGADLRSVQELLGHADIGTTQIYTHLTRKK----IREIYDHTHP 293


>gi|39995600|ref|NP_951551.1| PfpI family intracellular peptidase [Geobacter sulfurreducens PCA]
 gi|39982363|gb|AAR33824.1| site-specific recombinase, phage integrase family [Geobacter
           sulfurreducens PCA]
 gi|298504620|gb|ADI83343.1| site-specific recombinase, XerC [Geobacter sulfurreducens KN400]
          Length = 294

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 99/303 (32%), Positives = 151/303 (49%), Gaps = 16/303 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E   +++ LE ER +S  T  +YE D  QF  F+     E         +S+  +R +++
Sbjct: 4   EVTTFIRYLENERAVSPHTRAAYESDLAQFRDFV---RGELGAGAGAAAISHLLVRRWLA 60

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           +   Q     S+ R L+ +++F  YL +      +    +   K+   +P  LN  +   
Sbjct: 61  QLH-QSHARSSIGRKLAAVRAFFTYLVRTGALPRNPAELVSTPKREKKVPFHLNIDEVTA 119

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           LV+     +  E   +  R+ AIL  LY CG+R+SE   L    I     T+R+ GKG K
Sbjct: 120 LVE-----SPREPGVLSLRDRAILETLYSCGVRVSELTGLNVGGIDLADGTVRVLGKGGK 174

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+VP+    R A+  Y  L   + +  +++PLF   RG  L     +R + +    +  
Sbjct: 175 ERVVPIGSHARLALSSY--LAARN-HPPLEVPLFTNARGGRLTARSVRRVVDKHILKVAA 231

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL  G DLR+IQ +LGH  LSTTQ YT+V    G D +ME+YD+
Sbjct: 232 MRKISPHTLRHTFATHLLEGGADLRAIQELLGHASLSTTQKYTHV----GIDRLMEVYDK 287

Query: 317 THP 319
            HP
Sbjct: 288 AHP 290


>gi|167032086|ref|YP_001667317.1| site-specific tyrosine recombinase XerD [Pseudomonas putida GB-1]
 gi|166858574|gb|ABY96981.1| tyrosine recombinase XerD [Pseudomonas putida GB-1]
          Length = 298

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 152/309 (49%), Gaps = 32/309 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKR 78
            +L  L +E+GLS  T  SY  D     +F  +  E+ +++    R+L    I   ++ R
Sbjct: 11  QFLDALWLEKGLSDNTRVSYRSD---LALFNGWLQEQAVSLPDAGREL----ILDHLAWR 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q    RS  R LSG++ F +YL + ++      L +   +    LP++L+E       
Sbjct: 64  LDQGYKPRSTARFLSGLRGFFRYLLRERLVAIDPTLQVDMPQLGKPLPKSLSEADV---- 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL      + I  R+ A+L +LY CGLR++E +SLT   +   Q  LR+ GKG K R
Sbjct: 120 -EALLQAPDLGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKER 178

Query: 199 IVPLLPSV--------RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +VP+            R    E  +  P D+       LF  +RG+ +    F   I+  
Sbjct: 179 LVPMGEEAVVWLERYQRDGRAELLNGRPSDV-------LFPSLRGEQMTRQTFWHRIKHH 231

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            R  G+    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        +
Sbjct: 232 ARVAGIDKPLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR----L 287

Query: 311 MEIYDQTHP 319
            +++ Q HP
Sbjct: 288 QQLHAQHHP 296


>gi|283782965|ref|YP_003373719.1| tyrosine recombinase XerD [Gardnerella vaginalis 409-05]
 gi|283441042|gb|ADB13508.1| tyrosine recombinase XerD [Gardnerella vaginalis 409-05]
          Length = 319

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 97/320 (30%), Positives = 168/320 (52%), Gaps = 19/320 (5%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI-TIQT 62
           NN+PE  +  +    Q ++ +++IERGLSK T+ +Y  D + +  +L  Y E KI  I T
Sbjct: 12  NNIPEEFALHI----QRFIAHIDIERGLSKKTVSAYASDLQDYTCWL--YNERKIKDITT 65

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           I QL   +I ++I       +G R++ R L+ I  + +++             ++  K++
Sbjct: 66  ISQL---DIESYIRTLNELGLGTRTVARRLASIHEWHRFMLAHGDIQADVSAQVKAPKQA 122

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           + LP  L+ ++   +++      S +   I  R++A+L  LY  G RISEA+ +  ++I 
Sbjct: 123 DYLPDVLSIEEVNRVIEAAGNFGSSDA--ISIRDTALLEFLYATGARISEAVGVKFEDID 180

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL---FRGIRGKPLN 239
            ++S +++ GKG K R+VP+     +A+  Y +    +L L  +  L   F   RG  L+
Sbjct: 181 LNESVVKLTGKGSKQRLVPIGGCAVRALRNYMEKSRPELALKGKRELHTIFLNKRGSALS 240

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                  + Q      L      HTLRHS ATHL++ G D+R++Q +LGH  ++TTQIYT
Sbjct: 241 RQSAWEIVTQAGERAKLDKPLHPHTLRHSLATHLIAGGADVRTVQELLGHASVTTTQIYT 300

Query: 300 NVNSKNGGDWMMEIYDQTHP 319
           +++     D ++E Y  +HP
Sbjct: 301 HISP----DALVEAYVMSHP 316


>gi|115353184|ref|YP_775023.1| site-specific tyrosine recombinase XerC [Burkholderia ambifaria
           AMMD]
 gi|115283172|gb|ABI88689.1| tyrosine recombinase XerC [Burkholderia ambifaria AMMD]
          Length = 306

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 162/318 (50%), Gaps = 33/318 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L NL+  R LS+ TL++Y  +  +     A         + +  L+  ++R  +++   
Sbjct: 9   YLSNLKHVRQLSEHTLRAYSHELDELKKLAAG--------RPLDTLTAVDMRGAVARAHA 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS+   LS  ++F ++L +      + +  +R  K+  +LP+AL+   A  L+D 
Sbjct: 61  GGLSARSISHRLSAWRAFYRWLAQHIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDA 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTLR 189
            L  T+        R+ AIL L Y  GLR++E + L  +    D           ++ + 
Sbjct: 121 PLAGTTEGI-----RDHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLAEAEVT 175

Query: 190 IQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           ++GKG+K R VP+    RKAI  L  +     +   +   PLF  +RG  + PGV +  +
Sbjct: 176 VRGKGNKERKVPV---GRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMAPGVVRERV 232

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  +S TQ+YT+++ ++  
Sbjct: 233 KRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQH-- 290

Query: 308 DWMMEIYDQTHPSITQKD 325
             + +IYD  HP   ++D
Sbjct: 291 --LAKIYDSAHPRAKKRD 306


>gi|298253373|ref|ZP_06977165.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
 gi|297532768|gb|EFH71654.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
          Length = 319

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 97/320 (30%), Positives = 168/320 (52%), Gaps = 19/320 (5%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI-TIQT 62
           NN+PE  +  +    Q ++ +++IERGLSK T+ +Y  D + +  +L  Y E KI  I T
Sbjct: 12  NNIPEEFALHI----QRFIAHIDIERGLSKKTVSAYASDLQDYTCWL--YDERKIKDIAT 65

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           I QL   +I ++I       +G R++ R L+ I  + +++             ++  K++
Sbjct: 66  ISQL---DIESYIRTLNELGLGTRTVARRLASIHEWHRFMLAHGDIQADVSAQVKAPKQA 122

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           + LP  L+ ++   +++      S +   I  R++A+L  LY  G RISEA+ +  ++I 
Sbjct: 123 DYLPDVLSIEEVNRVIEAAGNFGSSDA--ISIRDTALLEFLYATGARISEAVGVKFEDID 180

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL---FRGIRGKPLN 239
            ++S +++ GKG K R+VP+     +A+  Y +    +L L  +  L   F   RG  L+
Sbjct: 181 LNESVVKLTGKGSKQRLVPIGGCAVRALRNYMEKSRPELALKGKRELHTIFLNKRGNALS 240

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                  + Q      L      HTLRHS ATHL++ G D+R++Q +LGH  ++TTQIYT
Sbjct: 241 RQSAWAIVTQAGERAKLDKPLHPHTLRHSLATHLIAGGADVRTVQELLGHASVTTTQIYT 300

Query: 300 NVNSKNGGDWMMEIYDQTHP 319
           +++     D ++E Y  +HP
Sbjct: 301 HISP----DALVEAYVMSHP 316


>gi|317129216|ref|YP_004095498.1| tyrosine recombinase XerC [Bacillus cellulosilyticus DSM 2522]
 gi|315474164|gb|ADU30767.1| tyrosine recombinase XerC [Bacillus cellulosilyticus DSM 2522]
          Length = 297

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 159/309 (51%), Gaps = 19/309 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL+K+   ++  L++E+  S  T  +Y+ D   F  F      + + I T   +SY +IR
Sbjct: 4   ELIKQ---FITYLQLEKQASNHTTLNYKNDILDFYAF-----TKSLKISTFVDVSYNDIR 55

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            +++    +     S+ R +S ++SF  +L + +I  E+   ++   K    LP    E+
Sbjct: 56  DYLTVLHQKAYSRNSIARKISALRSFYSFLMREEIVKENPFQSVTTPKGGKRLPTFFFEE 115

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L D     ++  +K +  RN+AIL LLY  G+R+SE +SL   +  +D  TL ++G
Sbjct: 116 ELAKLFD-----STDTSKPLGKRNNAILELLYATGIRVSECVSLNLMDYDNDIGTLFVRG 170

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           KG K R VP+     +A+ +Y +     L  N   +  LF   RG  L+    +  +  +
Sbjct: 171 KGKKERYVPVGSFAMEALNDYLNNGRPHLRSNQTNKDALFVNYRGGRLSDRSIRTILNNI 230

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            R        + H LRH+FATH+L+ G DLR++Q +LGH RLS+TQ+YT+V      D +
Sbjct: 231 VRDASTASRISPHVLRHTFATHMLNEGADLRTVQELLGHSRLSSTQVYTHVTK----DRL 286

Query: 311 MEIYDQTHP 319
            ++Y   HP
Sbjct: 287 RDVYRSAHP 295


>gi|332521253|ref|ZP_08397709.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
 gi|332042981|gb|EGI79179.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
          Length = 296

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 92/299 (30%), Positives = 155/299 (51%), Gaps = 12/299 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  LE+ER  S+LT+++Y  D   F  +L    E      TI+  +Y++IR++I +   
Sbjct: 6   FVDYLELERNYSQLTIKAYSKDIEAFQKYLKKNHE----TTTIKTANYSQIRSWIVQLVE 61

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            KI +R++ R +S + ++ K+L K +    + +   + LK S  +    ++ +    +D+
Sbjct: 62  SKISNRTINRKISALNTYYKFLLKIEQLKTNPLAKHKALKTSKKIQVPFSQTEVAMAIDD 121

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +     HE  +   RN  I+ L Y  G+R  E ++L  ++I     TL++ GK +K R V
Sbjct: 122 L----QHENNFKGLRNKLIIELFYSTGIRRIELVNLKIKDINQANKTLKVLGKRNKERYV 177

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           PLL SV K I +Y +      N+  Q  LF   RG  +   +  R I +        +  
Sbjct: 178 PLLDSVNKTINQYIEKRQELKNIKDQEYLFLTKRGVKIYETLVYRIINEYFSLASNKVKK 237

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           + H LRHSFATHLL+ G DL +++ +LGH  L+ TQ+YT+    N    + E+Y + HP
Sbjct: 238 SPHILRHSFATHLLNQGADLNAVKELLGHSSLAATQVYTH----NSIAQLKEVYLKAHP 292


>gi|332881238|ref|ZP_08448888.1| tyrosine recombinase XerD [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332680614|gb|EGJ53561.1| tyrosine recombinase XerD [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 317

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 96/288 (33%), Positives = 154/288 (53%), Gaps = 17/288 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + Q L++ERGLS  TL +Y  D R+ L FL    E  +  +T+   S  ++  F+++ 
Sbjct: 21  RRYYQYLKLERGLSGNTLDAYTEDLRKLLGFL---WEGGLDFRTV---SVDDLHQFMAEL 74

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               IG RS+ R LSGI+SF ++L   K   +     + + K    LP  L   +   ++
Sbjct: 75  ADVGIGPRSMARILSGIRSFYRFLYVEKEIVQDPTELLESPKIGRHLPEVLTVAEIDAMI 134

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             + L           RN AIL +LY CGLR+SE   L   ++  ++  +R++GKG K R
Sbjct: 135 AGIDLSQPE-----GQRNRAILEMLYSCGLRVSELCGLRISDLFLEEGFIRVKGKGGKER 189

Query: 199 IVPLLP-SVRKAILEYYDLCPFDLNL---NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +VP+   +VR+  LE + LC   +++   N         RG  L+      ++++L    
Sbjct: 190 LVPISGRAVRE--LENWFLCRNLIHIKPGNEDFVFLSLRRGASLSRITIFYWVKELAVAA 247

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           G+    + HT RHSFATHLL  G +LR+IQ++LGH  +STT+IYT+++
Sbjct: 248 GIQKKISPHTFRHSFATHLLEGGANLRAIQAMLGHESISTTEIYTHID 295


>gi|311742411|ref|ZP_07716220.1| tyrosine recombinase XerD [Aeromicrobium marinum DSM 15272]
 gi|311314039|gb|EFQ83947.1| tyrosine recombinase XerD [Aeromicrobium marinum DSM 15272]
          Length = 310

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 156/306 (50%), Gaps = 19/306 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L +L +ERGL+  TL SY  D R++L +LA    E+       +++  ++  F++  R
Sbjct: 14  DYLSHLGVERGLADNTLLSYRRDLRRYLGYLAEIGREQPD-----EITEADLLGFVALLR 68

Query: 80  TQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           T       +G  S+ R +  ++   ++  + ++        ++  + +  LP+AL    A
Sbjct: 69  TGDDLTGPLGAASVARHVVTVRGLHRFWLREQLVATDVAGAVKPPRPAQRLPKAL----A 124

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           L  V+ +L         +  R+ A+L LLYG G RISEA+ +   ++  D+STL ++GKG
Sbjct: 125 LEQVEAILDAAGAPGTRLAQRDRALLELLYGTGARISEAVGIDVDDLDLDESTLLLRGKG 184

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRY 253
            K RIVP+      AI +Y       L+     P LF   RG  L+       + +  R 
Sbjct: 185 GKHRIVPVGSFAATAIGDYLVGARVALSSTAASPALFLNSRGGRLSRQSAWTVLTRAARR 244

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V  +     + E+
Sbjct: 245 AGVETDVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVER----LREV 300

Query: 314 YDQTHP 319
           Y   HP
Sbjct: 301 YATAHP 306


>gi|53717850|ref|YP_106836.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           K96243]
 gi|76808989|ref|YP_331806.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           1710b]
 gi|126451479|ref|YP_001064490.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           1106a]
 gi|134283593|ref|ZP_01770292.1| tyrosine recombinase XerC [Burkholderia pseudomallei 305]
 gi|167736614|ref|ZP_02409388.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           14]
 gi|167813712|ref|ZP_02445392.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           91]
 gi|167822227|ref|ZP_02453698.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           9]
 gi|167843822|ref|ZP_02469330.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           B7210]
 gi|167909037|ref|ZP_02496128.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           112]
 gi|226199796|ref|ZP_03795347.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pakistan 9]
 gi|242316661|ref|ZP_04815677.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1106b]
 gi|254182208|ref|ZP_04888805.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1655]
 gi|254188137|ref|ZP_04894649.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pasteur 52237]
 gi|254196193|ref|ZP_04902617.1| tyrosine recombinase XerC [Burkholderia pseudomallei S13]
 gi|254261174|ref|ZP_04952228.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1710a]
 gi|254295751|ref|ZP_04963208.1| tyrosine recombinase XerC [Burkholderia pseudomallei 406e]
 gi|52208264|emb|CAH34195.1| integrase/recombinase [Burkholderia pseudomallei K96243]
 gi|76578442|gb|ABA47917.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1710b]
 gi|126225121|gb|ABN88661.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1106a]
 gi|134245002|gb|EBA45097.1| tyrosine recombinase XerC [Burkholderia pseudomallei 305]
 gi|157806287|gb|EDO83457.1| tyrosine recombinase XerC [Burkholderia pseudomallei 406e]
 gi|157935817|gb|EDO91487.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pasteur 52237]
 gi|169652936|gb|EDS85629.1| tyrosine recombinase XerC [Burkholderia pseudomallei S13]
 gi|184212746|gb|EDU09789.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1655]
 gi|225928147|gb|EEH24183.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pakistan 9]
 gi|242139900|gb|EES26302.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1106b]
 gi|254219863|gb|EET09247.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1710a]
          Length = 310

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 163/319 (51%), Gaps = 33/319 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L NL   R LS  TL++Y  +  +         ++    + +  L+  ++R+ +++  
Sbjct: 12  DYLSNLRHVRKLSDHTLRAYAHELDEL--------KKLANGRPLDSLTAVDMRSAVARAH 63

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +  RS+   LS  ++F ++  +      + +  +R  K++ +LP+AL+      L+D
Sbjct: 64  AGGLSARSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDTAALMD 123

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTL 188
                T+        R+ AIL L Y  GLR++E + L  + + D            ++ +
Sbjct: 124 APTAGTAESL-----RDHAILELFYSSGLRLAELIGLDIEYVKDGAYRSAGWLDLAEAEV 178

Query: 189 RIQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            ++GKGDK R VP+    RKA+  L  +     +   +   PLF  +RG  ++PGV +  
Sbjct: 179 TVRGKGDKERKVPV---GRKALDALHAWLAVRGEFVKHDPRPLFLSVRGNRMSPGVVRER 235

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  +S TQ+YT+++ ++ 
Sbjct: 236 VKRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQH- 294

Query: 307 GDWMMEIYDQTHPSITQKD 325
              + +IYD  HP   ++D
Sbjct: 295 ---LAKIYDSAHPRAKKRD 310


>gi|302335890|ref|YP_003801097.1| tyrosine recombinase XerD [Olsenella uli DSM 7084]
 gi|301319730|gb|ADK68217.1| tyrosine recombinase XerD [Olsenella uli DSM 7084]
          Length = 321

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 101/310 (32%), Positives = 157/310 (50%), Gaps = 29/310 (9%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            +L + +  +L  L IERG S  TL++Y  D  +++  L     +         +S  +I
Sbjct: 1   MDLTRAKDEYLNYLAIERGSSPNTLEAYGRDLGRYVAHLRGRGADDPD-----AVSRHDI 55

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
            A++       +   S++RS++ IK F +++   +IT      ++   +K+  LP  L+ 
Sbjct: 56  EAYLETLAEGGLSPSSVQRSVAAIKGFHRFMVSEQITENHPTADLPLPRKALHLPDTLSH 115

Query: 132 KQALTLVDNVLLHTSHETKWIDA-------------RNSAILYLLYGCGLRISEALSLTP 178
           +Q   L+D              A             R+ AIL +LYGCGLR+SE  SL  
Sbjct: 116 EQVFRLLDEPFQDACRPAPRALADGGTDDSGAARFYRDKAILEVLYGCGLRVSELCSLEL 175

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLP-LFRGIRGK 236
           ++++ D   LRI GKG K R+VP+L +  +A+  Y  D  P  L      P +F G RG 
Sbjct: 176 RDVLLDDEVLRILGKGSKERVVPILGTAARALGSYLEDWRPLLLKPPRICPAVFLGSRGT 235

Query: 237 PLNP----GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
            ++     G+ +RY R L    GL      H+LRHS+ATHLL  G DLR++Q +LGH  +
Sbjct: 236 KISRQAVFGIVERYGR-LTGIEGL----HPHSLRHSYATHLLEGGMDLRAVQELLGHASI 290

Query: 293 STTQIYTNVN 302
           STTQ+YT+V+
Sbjct: 291 STTQLYTHVD 300


>gi|300871744|ref|YP_003786617.1| tyrosine recombinase XerD [Brachyspira pilosicoli 95/1000]
 gi|300689445|gb|ADK32116.1| tyrosine recombinase, XerD [Brachyspira pilosicoli 95/1000]
          Length = 307

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 97/315 (30%), Positives = 165/315 (52%), Gaps = 35/315 (11%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL+E  ++LQ L      +  T+ SY  D ++++ FL     E   I       YT IR 
Sbjct: 16  LLEEFADYLQTL----NYAAHTINSYTKDLKEYIKFL-----EDNNIDFNDATHYT-IRD 65

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           + +  + +K+ + +  R LS IK F KYL +   + ++ I+NM++ K+   + + L    
Sbjct: 66  YFASLKNKKLKNATTSRHLSSIKKFYKYLIRNGYSDKTRIINMKSPKREEHIAKFL---- 121

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           +L  +D +L     E  +   R+  +   +Y  GLR SE +S+    +    +TLRI GK
Sbjct: 122 SLNDIDKIL-EIDDENDFTIIRDKMMAIFMYAIGLRASELISIKLNMMHKGSTTLRILGK 180

Query: 194 GDKIRIVPLLPSV---------RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           G K+R +PL+P +         ++AI++      +  N N    LF    GKP++    +
Sbjct: 181 GSKVREIPLIPIIYDNWDLYMQKRAIIQ----REYGSNNNY---LFVNRFGKPISDRSVR 233

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +++L R   + +  + HTLRH+FATHLL+N  ++R +Q +LGH  +STTQ YT+V + 
Sbjct: 234 NSMKRLMRMANISVDFSPHTLRHTFATHLLNNDAEIRGVQELLGHESISTTQRYTHVTN- 292

Query: 305 NGGDWMMEIYDQTHP 319
              D + E+Y++ HP
Sbjct: 293 ---DRLFEVYNRAHP 304


>gi|126665073|ref|ZP_01736056.1| site-specific tyrosine recombinase XerD [Marinobacter sp. ELB17]
 gi|126630443|gb|EBA01058.1| site-specific tyrosine recombinase XerD [Marinobacter sp. ELB17]
          Length = 314

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 99/294 (33%), Positives = 146/294 (49%), Gaps = 14/294 (4%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +E GLS+ T ++Y  D      +L       + I T R    +++  ++S      +   
Sbjct: 32  LEDGLSEKTREAYRSDLGGLAQWLQGQPGTPLLIATQR----SDLLTWLSGGLAGGVKAS 87

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           +  R LSGI+ F +YL +  +  E   L + + K +  LP  L E +      N LL   
Sbjct: 88  TAARRLSGIRRFYRYLLREGLIPEDPTLRIESPKLTRPLPDTLTEAEV-----NALLTEP 142

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                I+ R+ A+L +LYGCGLR++E  SL    +   Q  +RI GKGDK R+VPL    
Sbjct: 143 DPEVPIELRDKAMLEILYGCGLRVTELTSLRLDQVNLRQGVVRITGKGDKDRLVPLGEEA 202

Query: 207 RKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              +  Y  +  P  L  +    LF G R K +    F   I+      G+    + HTL
Sbjct: 203 IDWLQRYIKEARPELLKGHACDDLFPGNRPKAMTRQTFWHRIKHYAARTGIQKHLSPHTL 262

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           RH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V  +     + E++ Q HP
Sbjct: 263 RHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVARQR----LQELHRQHHP 312


>gi|171320566|ref|ZP_02909590.1| tyrosine recombinase XerC [Burkholderia ambifaria MEX-5]
 gi|171094193|gb|EDT39276.1| tyrosine recombinase XerC [Burkholderia ambifaria MEX-5]
          Length = 306

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 162/318 (50%), Gaps = 33/318 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L NL+  R LS+ TL++Y  +  +     A         + +  L+  ++R  +++   
Sbjct: 9   YLSNLKHVRQLSEHTLRAYTHELDELKKLAAG--------RPLDALTAVDMRGAVARAHA 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS+   LS  ++F ++L +R     + +  +R  K+  +LP+AL+   A  L+D 
Sbjct: 61  GGLSARSIAHRLSAWRAFYRWLAQRIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDA 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTLR 189
            L  T+        R+ AIL L Y  GLR++E + L       D           ++ + 
Sbjct: 121 PLAGTTEGI-----RDHAILELFYSSGLRLAELVGLDVMYTQADGYRSAGWLDLAEAEVT 175

Query: 190 IQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           ++GKG+K R VP+    RKAI  L  +     +   +   PLF  +RG  + PGV +  +
Sbjct: 176 VRGKGNKERKVPV---GRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMAPGVVRDRV 232

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  ++ TQ+YT+++ ++  
Sbjct: 233 KRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYTSLDFQH-- 290

Query: 308 DWMMEIYDQTHPSITQKD 325
             + +IYD  HP   ++D
Sbjct: 291 --LAKIYDSAHPRAKKRD 306


>gi|186474845|ref|YP_001856315.1| site-specific tyrosine recombinase XerC [Burkholderia phymatum
           STM815]
 gi|184191304|gb|ACC69269.1| tyrosine recombinase XerC [Burkholderia phymatum STM815]
          Length = 307

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 162/323 (50%), Gaps = 41/323 (12%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L +LE ER LS  TL++Y  +  +               + +  L+ T+IR  +++  
Sbjct: 9   TYLSSLEHERRLSAHTLRAYTHELGELKTL--------ANGRPLESLTATDIRGAVARAH 60

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +  RS+   LS  ++F ++L  R     + +  +R  K++ +LP+AL+       VD
Sbjct: 61  AGGLSARSIGHRLSAWRAFYRWLAGRVDLPANPVATVRAPKRAKTLPKALS-------VD 113

Query: 140 NV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-----------IMDDQS 186
           +   L+ T         R+ A+L L Y  GLR+SE + L  Q            +  D +
Sbjct: 114 DTHKLMETPATATAEGLRDHAMLELFYSSGLRLSELVGLDAQYADADGYRSQGWLKLDDA 173

Query: 187 TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
            + + GKG++ R+VP+    L ++R  +    +L   D +     PLF  +RG  ++P V
Sbjct: 174 EVEVLGKGNRRRVVPVGSKALEALRAWLAVRGELVKHDPH-----PLFVSVRGNRMSPNV 228

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +  +++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  ++ TQ+YT ++
Sbjct: 229 VRDRVKRAALTAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASIAATQVYTGLD 288

Query: 303 SKNGGDWMMEIYDQTHPSITQKD 325
            ++    +  IYDQ HP   ++D
Sbjct: 289 FQH----LARIYDQAHPRAKKRD 307


>gi|254251134|ref|ZP_04944452.1| Site-specific recombinase XerC [Burkholderia dolosa AUO158]
 gi|124893743|gb|EAY67623.1| Site-specific recombinase XerC [Burkholderia dolosa AUO158]
          Length = 306

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 160/318 (50%), Gaps = 33/318 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L NL+  R LS+ TL++Y  +  +     A    E +T          ++R  +++   
Sbjct: 9   YLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLETLTA--------VDMRGAVARAHA 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS+   LS  ++F ++L +      + +  +R  K+  +LP+AL+   A  L+D 
Sbjct: 61  GGLSARSIAHRLSAWRAFYRWLAQHVEMPANPVAAVRAPKRPKTLPKALSVDDASALMDA 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTLR 189
            L  T+        R+ AIL L Y  GLR++E + L       D           ++ + 
Sbjct: 121 PLADTTEGI-----RDRAILELFYSSGLRLAELIGLDVAYAQADGYRSAGWLDLAEAEVT 175

Query: 190 IQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           ++GKG+K R VP+    RKAI  L  +     +   +   PLF  +RG  + PGV +  +
Sbjct: 176 VRGKGNKERKVPV---GRKAIDALNAWLAVRGEFVRHDPHPLFLSVRGNRMAPGVVRERV 232

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  ++ TQIYT+++ ++  
Sbjct: 233 KRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQH-- 290

Query: 308 DWMMEIYDQTHPSITQKD 325
             + +IYD  HP   ++D
Sbjct: 291 --LAKIYDSAHPRAKKRD 306


>gi|172062036|ref|YP_001809688.1| site-specific tyrosine recombinase XerC [Burkholderia ambifaria
           MC40-6]
 gi|171994553|gb|ACB65472.1| tyrosine recombinase XerC [Burkholderia ambifaria MC40-6]
          Length = 306

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 162/318 (50%), Gaps = 33/318 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L NL+  R LS+ TL++Y  +  +     A         + +  L+  ++R  +++   
Sbjct: 9   YLSNLKHVRQLSEHTLRAYTHELDELKKLAAG--------RPLDTLTAVDMRGAVARAHA 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS+   LS  ++F ++L +      + +  +R  K+  +LP+AL+   A  L+D 
Sbjct: 61  GGLSARSISHRLSAWRAFYRWLAQHIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDA 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTLR 189
            L  T+        R+ AIL L Y  GLR++E + L  +    D           ++ + 
Sbjct: 121 PLAGTTEGI-----RDHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLAEAEVT 175

Query: 190 IQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           ++GKG+K R VP+    RKAI  L  +     +   +   PLF  +RG  + PGV +  +
Sbjct: 176 VRGKGNKERKVPV---GRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMAPGVVRERV 232

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  +S TQ+YT+++ ++  
Sbjct: 233 KRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQH-- 290

Query: 308 DWMMEIYDQTHPSITQKD 325
             + +IYD  HP   ++D
Sbjct: 291 --LAKIYDSAHPRAKKRD 306


>gi|258515282|ref|YP_003191504.1| tyrosine recombinase XerD [Desulfotomaculum acetoxidans DSM 771]
 gi|257778987|gb|ACV62881.1| tyrosine recombinase XerD [Desulfotomaculum acetoxidans DSM 771]
          Length = 296

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 150/302 (49%), Gaps = 16/302 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N++  L +ERGL++ TL +Y  D + FL F      +   I++        I  ++   +
Sbjct: 7   NFIYYLAVERGLAENTLSAYRMDLQNFLSFC-----QDKQIKSWSDAGKNTILMYMMFLK 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q +   ++ R L+ +KSF ++L   ++   S   +M + K S  LP  L+  +      
Sbjct: 62  QQAMSPATISRRLAALKSFFRFLTSEQVVEFSPTESMESPKLSQKLPNVLSTSEV----- 116

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            +LL     ++    R+ A+L LLY  G+R+SE + L  +++   +  +R  GKG K RI
Sbjct: 117 ELLLMQPKISQPAGIRDKAMLELLYATGIRVSELVDLNLEDVSIAEQFIRCYGKGSKERI 176

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           VPL       + EY       L    Q    LF    G+ L    F + I++  R   + 
Sbjct: 177 VPLGSLSASFVEEYLQKGRVKLIKKAQTTNALFLNHHGQRLTRQGFWKIIKKYGRQGKID 236

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT++        + E+Y  +
Sbjct: 237 KPITPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHLTKTR----LKEVYKNS 292

Query: 318 HP 319
           HP
Sbjct: 293 HP 294


>gi|149372788|ref|ZP_01891809.1| site-specific recombinase [unidentified eubacterium SCB49]
 gi|149354485|gb|EDM43050.1| site-specific recombinase [unidentified eubacterium SCB49]
          Length = 299

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 100/303 (33%), Positives = 155/303 (51%), Gaps = 28/303 (9%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L IERGLS  T+ +Y  D  +   +L    E ++ I  I  +S   I+ FI +   + + 
Sbjct: 14  LRIERGLSDNTIANYALDILKLTKWLE---ENEMAISPI-DISEKTIQEFIYEI-AKTVA 68

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R +SG+K F  YL   +  T + +  M + K    LP  L+EK+   L+  + L 
Sbjct: 69  PSSQSRVISGLKGFFNYLVFEEYRTTNPLELMESPKIGRKLPDTLSEKEIDLLISEIDLS 128

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           +         RN AIL  LYGCGLR+SE ++L   ++  ++  +++ GKGDK R VP+  
Sbjct: 129 SPQ-----GERNRAILETLYGCGLRVSEIINLKISDLFFEEGFIKVTGKGDKERFVPIGD 183

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP--------LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +  K I  Y +       + +  P        LF   RGK L   +    I++L    G+
Sbjct: 184 NTIKFINIYRN------EIRVHEPIKPEASDTLFLNRRGKGLTRAMIFTIIKRLLEKTGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HT RHSFATHLL  G DLR+IQ +LGH  ++TT+IYT+++  +    + E+  +
Sbjct: 238 QKNVSPHTFRHSFATHLLERGADLRAIQQMLGHESITTTEIYTHIDKSH----LTEVIHK 293

Query: 317 THP 319
            HP
Sbjct: 294 FHP 296


>gi|323489648|ref|ZP_08094875.1| tyrosine recombinase xerD [Planococcus donghaensis MPA1U2]
 gi|323396779|gb|EGA89598.1| tyrosine recombinase xerD [Planococcus donghaensis MPA1U2]
          Length = 300

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 158/302 (52%), Gaps = 15/302 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +++  L +ER L+  TL SYE D + +L +L    +E   +++++++    I   +   +
Sbjct: 10  DYIHFLRVERQLADNTLSSYERDLKVYLQYL----KEVEQLESLKKVERVHILNHLRHLK 65

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                 R++ R +S I+SF +++ + +I      +++   +    LP  L+ ++      
Sbjct: 66  ETTKTPRTVARHISSIRSFHQFMIRERIVETDPTVHLEMPQMDKKLPNILSIEEV----- 120

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           + L+      K    R+ A+L LLY  G+R+SE ++L  +++      +R  GKG K RI
Sbjct: 121 DALIQVPATNKANGLRDQAMLELLYASGMRVSECINLDIEDVHLTMGFVRCTGKGGKERI 180

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +PL  S   +   Y +    DL  + +    LF   RGK L    F + ++Q  +  G+ 
Sbjct: 181 IPLGKSALTSCQTYLEQGRIDLVKSGEKTDALFINQRGKRLTRQGFWKLLKQHAQKAGIQ 240

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T HTLRHSFATHLL NG D+R++Q +LGH  +STTQIYT+V+       + ++Y Q 
Sbjct: 241 KELTPHTLRHSFATHLLENGADIRAVQEMLGHADISTTQIYTHVSKTR----LKDVYSQF 296

Query: 318 HP 319
           HP
Sbjct: 297 HP 298


>gi|227549328|ref|ZP_03979377.1| site-specific tyrosine recombinase XerD [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078647|gb|EEI16610.1| site-specific tyrosine recombinase XerD [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 301

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 143/313 (45%), Gaps = 19/313 (6%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
             LL+    WL +L +ERG++  TL +Y  D  +++ +L     E   I  +  +S   +
Sbjct: 1   MNLLQVATMWLDHLAVERGVAANTLSNYRRDVERYIAWL-----EAAGISRLDDVSTNHV 55

Query: 72  RAFISK-----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
            A+++       R + +   S  R+L   +   K+     +T       +        LP
Sbjct: 56  EAYVADLRRGVGRAKPLSASSAGRALVVARGLHKFAVAEGLTQADVASAVAPPSAGEKLP 115

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             L+  +   L+D     T       D R+ A+L +LY  G R+SE L L   ++  D  
Sbjct: 116 DTLSIDEVARLLDACPTRTP-----CDLRDKALLEVLYATGARVSEVLGLVVDDVASDAD 170

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            L + GKG K R+VPL    R+A+  Y       L       LF   RG  L+       
Sbjct: 171 VLTVTGKGSKQRLVPLGSHAREAVDAYLVRGRPVLAKGSTYALFLNRRGTALSRQSAWGI 230

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           I+      GL    + HTLRHSFATHLL  G D+R++Q +LGH  ++TTQIYT++ + N 
Sbjct: 231 IKDAAERAGLAKDISPHTLRHSFATHLLEGGADVRTVQELLGHASVTTTQIYTHITADN- 289

Query: 307 GDWMMEIYDQTHP 319
              + E++   HP
Sbjct: 290 ---LREVWRMAHP 299


>gi|468715|emb|CAA55226.1| sss [Pseudomonas aeruginosa]
          Length = 302

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 102/313 (32%), Positives = 155/313 (49%), Gaps = 27/313 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L++L  ER +S  TL  Y    R  L  LA    EK  +     L    +R F+++   
Sbjct: 8   FLEHLRSERQVSAHTLDGYR---RDLLKILAL--AEKAGLSDWNALDTRSLRTFVARLHQ 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q    RSL R LS  +   +YL +           +R  K    LPR L+  +AL L+D 
Sbjct: 63  QGQSSRSLARLLSATRGLYQYLLREGRCRHDPANGLRAPKSPRKLPRTLDADRALQLLDG 122

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +     E  +I  R+ A+L L Y  GLR+SE + L  + +   +  +R++GKG+K+R +
Sbjct: 123 AV-----EDDFIARRDQALLELFYSSGLRLSELVGLDLEWLDLKEGLVRVRGKGNKVREL 177

Query: 201 PLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR-RYLG 255
           P+  + R+A+  +  L     P D        +F G  GK L P   Q  +RQ   R LG
Sbjct: 178 PVGKAARQALEAWLPLRTQAAPEDG------AVFIGRSGKRLTPRAIQLRVRQAGVRELG 231

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
             L    H LRHSFA+HLL + GDLR++Q +LGH  ++TTQIYT+++ ++    +  +YD
Sbjct: 232 QHLHP--HMLRHSFASHLLESSGDLRAVQELLGHADIATTQIYTHLDFQH----LASVYD 285

Query: 316 QTHPSITQKDKKN 328
              P   Q  +  
Sbjct: 286 APIPRAKQGQRDG 298


>gi|282916763|ref|ZP_06324521.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           D139]
 gi|283770568|ref|ZP_06343460.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus H19]
 gi|282319250|gb|EFB49602.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           D139]
 gi|283460715|gb|EFC07805.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus H19]
 gi|302333169|gb|ADL23362.1| site-specific recombinase XerD [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 295

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 102/304 (33%), Positives = 164/304 (53%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTI-RQLSYTEIRAFIS 76
           + +L+ ++IE+GLS  T+ +Y  D +++  ++   TE  I+ I  I RQL    +   I 
Sbjct: 6   EEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYM---TEHHISHIDFIDRQLIQECLGHLID 62

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           + ++ K    S+ R +S I+SF ++  + K   +   + + + K    LP  LN  + L 
Sbjct: 63  QGQSAK----SIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLA 118

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L     L T    K    R+  +L LLY  G+R+SE + L  +++      +R+ GKGDK
Sbjct: 119 L-----LETPDLNKINGYRDRTMLELLYATGMRVSELIHLELEHVNLIMGFVRVFGKGDK 173

Query: 197 IRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            RIVPL  +V + +  Y + + P  L   +   LF  + GKPL+     + I+Q      
Sbjct: 174 ERIVPLGDAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKAN 233

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y+
Sbjct: 234 IKKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYN 289

Query: 316 QTHP 319
           Q HP
Sbjct: 290 QFHP 293


>gi|329929830|ref|ZP_08283506.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
 gi|328935808|gb|EGG32269.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
          Length = 294

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 98/301 (32%), Positives = 154/301 (51%), Gaps = 16/301 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            ++Q LE E+GLS+ T+ SY  D + FL   AF  E ++T    R+++ T +  ++ + R
Sbjct: 7   EYVQYLEDEKGLSRSTIASYRADLQGFL---AFAAEREVT--HPREVNRTLLGLYVGRLR 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q     SL R  + ++SF +YL ++ +  +     + N K     P++L  +Q    VD
Sbjct: 62  QQGKAASSLLRCTASLRSFFQYLVRQAVIVQDPTQLLDNPKPERKPPKSLTVEQ----VD 117

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            +L      T    AR+ A+L LLY  G+++SE ++L+  +I  +   LR    G K RI
Sbjct: 118 KLLSAPDSGTPQ-GARDKAMLELLYASGIKVSELVNLSVHDIQLEMRFLRCAVSGGKERI 176

Query: 200 VPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +P+ P   +++  Y  D+    +    +  LF    G  L    F + I++  +   +  
Sbjct: 177 LPITPIAAESVALYVRDMRDKLMRDAGEDALFLNSLGTRLTRQGFWKIIKKYGKLADIDE 236

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             T HTLRHSFA HLL NG DLRS+Q +LGH  LSTT +Y +         M E+YD  H
Sbjct: 237 DITPHTLRHSFAMHLLGNGADLRSVQEMLGHSALSTTGMYQSAKKS-----MKEVYDHYH 291

Query: 319 P 319
           P
Sbjct: 292 P 292


>gi|299821615|ref|ZP_07053503.1| tyrosine recombinase XerD [Listeria grayi DSM 20601]
 gi|299817280|gb|EFI84516.1| tyrosine recombinase XerD [Listeria grayi DSM 20601]
          Length = 296

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 95/307 (30%), Positives = 157/307 (51%), Gaps = 24/307 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  L +E+GL+  T+Q+Y+ D R F  FL     E IT      ++   + AFI+  
Sbjct: 6   EDFLHYLVVEKGLAANTIQAYKRDLRYFDSFLEI---EGIT--DPNSITRGTVVAFIAFA 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R      R++ R L+ ++SF  +L   +      ++ +   K++ +LP+ L+ ++     
Sbjct: 61  RDADKSPRTIARYLASLRSFFHFLLHDQKMDHDPMIQIETPKQTKALPKVLHLEEV---- 116

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL        +  R+ A+L +LY  GLR+SE + L   ++      ++  GKGDK R
Sbjct: 117 -EKLLAAPDPNSILGLRDQAMLEILYATGLRVSELIHLKLDDLHLHMGFIQTIGKGDKER 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI------RGKPLNPGVFQRYIRQLRR 252
           I+PL  +    + +Y +    +    ++ P +R         G  L    F + ++QL +
Sbjct: 176 IIPLGHTATAVLTKYLE----EARPKLRKPKYRNDYVFLNHHGGGLTRQGFWKLLKQLAQ 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT+V        + +
Sbjct: 232 KAGIDKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLR----LQD 287

Query: 313 IYDQTHP 319
           +Y + HP
Sbjct: 288 VYKKYHP 294


>gi|227488616|ref|ZP_03918932.1| site-specific tyrosine recombinase XerC [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227543219|ref|ZP_03973268.1| site-specific tyrosine recombinase XerC [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227091510|gb|EEI26822.1| site-specific tyrosine recombinase XerC [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227181028|gb|EEI62000.1| site-specific tyrosine recombinase XerC [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 295

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 153/302 (50%), Gaps = 20/302 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++  +L    G S+ T++ Y  D    L+    Y      +  +   + T +RA++ + 
Sbjct: 11  EDYCDHLRFNEGKSEATIRGYRSD----LLLACEY------LNGVAGFTLTGLRAWLGEA 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            +      +L R  + ++SF  +  K+    E     +R   KS+ LP  L   QA  ++
Sbjct: 61  VSAGKSRATLARRTAAVRSFSAWAHKQGYLEEDAARRLRVPYKSHHLPTVLTSDQAGEMM 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            N   H+  E +++  R+SAIL LLY  G+R++E  SL   ++   ++T+++ GKG+K R
Sbjct: 121 GNAGSHS--EPEFL--RDSAILELLYATGMRVAELCSLDVADVDGAKNTVKVTGKGNKQR 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP     R A+ ++           +    LF G+RG  ++P   +R +       G+ 
Sbjct: 177 VVPFGAPARNALDQWISAGRGHFATADSGDALFLGVRGGRIDPRQVRRIVETAAANTGVD 236

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T H+LRH+ ATHLL  G DLR++Q  LGH  L TTQIYT+V+    G+ + +IY+  
Sbjct: 237 -GITPHSLRHTAATHLLEGGADLRAVQEFLGHSSLQTTQIYTHVS----GERLKKIYNNA 291

Query: 318 HP 319
           HP
Sbjct: 292 HP 293


>gi|70733299|ref|YP_263073.1| site-specific tyrosine recombinase XerC [Pseudomonas fluorescens
           Pf-5]
 gi|123748313|sp|Q4K3W0|XERC_PSEF5 RecName: Full=Tyrosine recombinase xerC
 gi|68347598|gb|AAY95204.1| tyrosine recombinase XerC [Pseudomonas fluorescens Pf-5]
          Length = 298

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 95/300 (31%), Positives = 150/300 (50%), Gaps = 19/300 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +  +L  ER +S  TLQ+Y  D  + L F      EK+ +++   L    +R+ I++   
Sbjct: 8   YCAHLRSERQVSPHTLQAYRRDLEKVLGFC-----EKMQVRSWTDLDIQGLRSLIARLHQ 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q    RSL R LS ++    YL +  + T      +   K    LP+ L+  + L L+D 
Sbjct: 63  QGQSSRSLARLLSAVRGLYHYLNREGLCTHDPANGLAPPKGERRLPKTLDTDRTLQLLDG 122

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +     E  ++  R+ AIL L Y CGLR+SE  SL    +      +++ GKG K R++
Sbjct: 123 AV-----EDDFLAHRDQAILELFYSCGLRLSELTSLNLDQLDLADGLVQVHGKGSKTRVL 177

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLS 259
           P+    R A+ ++  L    L+      LF   +G+ L P   Q  ++    R LG  L 
Sbjct: 178 PVGKKARSALEQWLPL--RALSNPPDGALFVSQKGRRLGPRAIQLRVKAAGERELGQNLH 235

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +YD  HP
Sbjct: 236 P--HMLRHSFASHLLESSQDLRAVQELLGHSDIKTTQIYTHLDFQH----LAAVYDSAHP 289


>gi|323439501|gb|EGA97222.1| site-specific recombinase [Staphylococcus aureus O11]
 gi|323441531|gb|EGA99182.1| site-specific recombinase [Staphylococcus aureus O46]
          Length = 295

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 102/304 (33%), Positives = 164/304 (53%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTI-RQLSYTEIRAFIS 76
           + +L+ ++IE+GLS  T+ +Y  D +++  ++   TE  I+ I  I RQL    +   I 
Sbjct: 6   EEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYM---TEHHISHIDFIDRQLIQECLGHLID 62

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           + ++ K    S+ R +S I+SF ++  + K   +   + + + K    LP  LN  + L 
Sbjct: 63  QGQSAK----SIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLA 118

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L     L T    K    R+  +L LLY  G+R+SE + L  +++      +R+ GKGDK
Sbjct: 119 L-----LETPDLNKINGYRDRTMLELLYATGMRVSELIHLELEHVNLIMGFVRVFGKGDK 173

Query: 197 IRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            RIVPL  +V + +  Y + + P  L   +   LF  + GKPL+     + I+Q      
Sbjct: 174 ERIVPLGDTVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKAN 233

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y+
Sbjct: 234 IKKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYN 289

Query: 316 QTHP 319
           Q HP
Sbjct: 290 QFHP 293


>gi|187930760|ref|YP_001901247.1| site-specific tyrosine recombinase XerC [Ralstonia pickettii 12J]
 gi|254799354|sp|B2U7W2|XERC_RALPJ RecName: Full=Tyrosine recombinase xerC
 gi|187727650|gb|ACD28815.1| tyrosine recombinase XerC [Ralstonia pickettii 12J]
          Length = 328

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 100/325 (30%), Positives = 164/325 (50%), Gaps = 39/325 (12%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L+ ER LS  TLQSY   TR+  +      +    I  + QL    IR  +++   
Sbjct: 22  YLDALKFERQLSPHTLQSY---TRELAVLQRLGAQHAANID-LTQLQSHHIRRMMAQLHG 77

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVD 139
             +  RS+ R+LS  + + K++  R     +N ++ +R  K    LP+AL+ +QA+ L++
Sbjct: 78  DGLSGRSIARALSAWRGWFKWMALRDAAVTANPVDGVRAPKSPKRLPKALSVEQAVALME 137

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----------MD-DQSTL 188
             L     ET     R+ A+  L Y CGLR+SE +SL  +++          +D +   +
Sbjct: 138 Q-LPGDDAET----IRDRAVNELFYSCGLRLSELVSLDMRHVKAGAYESASWLDLEAREV 192

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYY---------DLCPFDLNLNIQLPLFRGIRGKPLN 239
           ++ GKG K R VP+     +A+  +          D  P D +      LF   RGK L 
Sbjct: 193 QVLGKGSKRRTVPVGTKATEALAAWLAVRAQLAKSDAAPEDAHA-----LFLSPRGKRLA 247

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               Q  +++     G+P     H LRHSFATH+L + GDLR++Q +LGH  +++TQ+YT
Sbjct: 248 QRQIQLRMKRNAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT 307

Query: 300 NVNSKNGGDWMMEIYDQTHPSITQK 324
           +++ ++    + +IYDQ HP   +K
Sbjct: 308 SLDFQH----LAKIYDQAHPRAKKK 328


>gi|227524454|ref|ZP_03954503.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus
           hilgardii ATCC 8290]
 gi|227088413|gb|EEI23725.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus
           hilgardii ATCC 8290]
          Length = 295

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 159/303 (52%), Gaps = 19/303 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L +ERGLS+ T++ Y+ D  + + F    T++   +     L+Y E        +
Sbjct: 7   DYLHFLRVERGLSENTIKGYQQDLSEAIHFFQKTTKDISKVDQFLILNYLE------NLQ 60

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +K    ++ R++S +++F +YL +  +  +  +L + + K+S +LP  L+  +      
Sbjct: 61  QEKKSRNTVIRTVSSLRNFFRYLAQFGVVPDDPMLKVDSPKQSKTLPDVLSVSEV----- 115

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           N LL   + +K +  R+ A+L  LY  GLR+SE ++L   ++      ++  GKGD+ RI
Sbjct: 116 NKLLSMPNVSKPLGVRDRAMLETLYATGLRVSELVNLRLVDLHLPMKLIQTVGKGDRERI 175

Query: 200 VPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +P+       I +Y      DL     N    +F    G+ L      + I++  +  G+
Sbjct: 176 IPIGDVAIDWITQYLKTTRIDLLRKRTNTDF-VFLNAHGRRLTRQAIWQMIKKYVKLAGI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               T HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT+++ K+    + E+Y +
Sbjct: 235 KRHVTPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHISHKH----LTEVYQK 290

Query: 317 THP 319
            HP
Sbjct: 291 FHP 293


>gi|83720176|ref|YP_440728.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis
           E264]
 gi|167617501|ref|ZP_02386132.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis
           Bt4]
 gi|257140623|ref|ZP_05588885.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis
           E264]
 gi|83654001|gb|ABC38064.1| tyrosine recombinase XerC [Burkholderia thailandensis E264]
          Length = 306

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 160/319 (50%), Gaps = 33/319 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L NL   R LS  TL++Y  +  +          +    + +  L+  ++R  +++  
Sbjct: 8   DYLSNLRHVRKLSDHTLRAYAHELGEL--------RKLANGRPLESLTAVDMRGAVARAH 59

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +  RS+   LS  ++F ++  +      + +  +R  K++ +LP+AL+   A  L+D
Sbjct: 60  AGGLSARSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDAAALMD 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTL 188
                T+        R+ AIL L Y  GLR++E + L  +   D            ++ +
Sbjct: 120 APTAGTAEHL-----RDHAILELFYSSGLRLAELIGLDVEYTKDGDYRSEGWLDLAEAEV 174

Query: 189 RIQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            ++GKG+K R VP+    RKAI  L  +     +       PLF  +RG  ++PGV +  
Sbjct: 175 TVRGKGEKERKVPV---GRKAIDALNAWLAVRGEFVKRDARPLFLSVRGNRMSPGVVRER 231

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  +S TQ+YT+++ ++ 
Sbjct: 232 VKRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQH- 290

Query: 307 GDWMMEIYDQTHPSITQKD 325
              + +IYD  HP   ++D
Sbjct: 291 ---LAKIYDSAHPRAKKRD 306


>gi|53724457|ref|YP_104732.1| site-specific tyrosine recombinase XerC [Burkholderia mallei ATCC
           23344]
 gi|67639320|ref|ZP_00438190.1| tyrosine recombinase XerC [Burkholderia mallei GB8 horse 4]
 gi|121598868|ref|YP_994214.1| site-specific tyrosine recombinase XerC [Burkholderia mallei SAVP1]
 gi|124383751|ref|YP_001028133.1| site-specific tyrosine recombinase XerC [Burkholderia mallei NCTC
           10229]
 gi|126441319|ref|YP_001057248.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           668]
 gi|126449297|ref|YP_001082944.1| site-specific tyrosine recombinase XerC [Burkholderia mallei NCTC
           10247]
 gi|167003305|ref|ZP_02269093.1| tyrosine recombinase XerC [Burkholderia mallei PRL-20]
 gi|167892320|ref|ZP_02479722.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           7894]
 gi|167900817|ref|ZP_02488022.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           NCTC 13177]
 gi|217424901|ref|ZP_03456397.1| tyrosine recombinase XerC [Burkholderia pseudomallei 576]
 gi|237810385|ref|YP_002894836.1| tyrosine recombinase XerC [Burkholderia pseudomallei MSHR346]
 gi|254175248|ref|ZP_04881909.1| tyrosine recombinase XerC [Burkholderia mallei ATCC 10399]
 gi|254201831|ref|ZP_04908195.1| tyrosine recombinase XerC [Burkholderia mallei FMH]
 gi|254207161|ref|ZP_04913512.1| tyrosine recombinase XerC [Burkholderia mallei JHU]
 gi|254359667|ref|ZP_04975938.1| tyrosine recombinase XerC [Burkholderia mallei 2002721280]
 gi|52427880|gb|AAU48473.1| integrase/recombinase XerC [Burkholderia mallei ATCC 23344]
 gi|121227678|gb|ABM50196.1| tyrosine recombinase XerC [Burkholderia mallei SAVP1]
 gi|124291771|gb|ABN01040.1| integrase/recombinase XerC [Burkholderia mallei NCTC 10229]
 gi|126220812|gb|ABN84318.1| tyrosine recombinase XerC [Burkholderia pseudomallei 668]
 gi|126242167|gb|ABO05260.1| tyrosine recombinase XerC [Burkholderia mallei NCTC 10247]
 gi|147747725|gb|EDK54801.1| tyrosine recombinase XerC [Burkholderia mallei FMH]
 gi|147752703|gb|EDK59769.1| tyrosine recombinase XerC [Burkholderia mallei JHU]
 gi|148028881|gb|EDK86813.1| tyrosine recombinase XerC [Burkholderia mallei 2002721280]
 gi|160696293|gb|EDP86263.1| tyrosine recombinase XerC [Burkholderia mallei ATCC 10399]
 gi|217391921|gb|EEC31947.1| tyrosine recombinase XerC [Burkholderia pseudomallei 576]
 gi|237506023|gb|ACQ98341.1| tyrosine recombinase XerC [Burkholderia pseudomallei MSHR346]
 gi|238519856|gb|EEP83322.1| tyrosine recombinase XerC [Burkholderia mallei GB8 horse 4]
 gi|243061115|gb|EES43301.1| tyrosine recombinase XerC [Burkholderia mallei PRL-20]
          Length = 310

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 162/319 (50%), Gaps = 33/319 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L NL   R LS  TL++Y  +  +         +     + +  L+  ++R+ +++  
Sbjct: 12  DYLSNLRHVRKLSDHTLRAYAHELDEL--------KRLANGRPLDSLTAVDMRSAVARAH 63

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +  RS+   LS  ++F ++  +      + +  +R  K++ +LP+AL+      L+D
Sbjct: 64  AGGLSARSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDTAALMD 123

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTL 188
                T+        R+ AIL L Y  GLR++E + L  + + D            ++ +
Sbjct: 124 APTAGTAESL-----RDHAILELFYSSGLRLAELIGLDIEYVKDGAYRSAGWLDLAEAEV 178

Query: 189 RIQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            ++GKGDK R VP+    RKA+  L  +     +   +   PLF  +RG  ++PGV +  
Sbjct: 179 TVRGKGDKERKVPV---GRKALDALHAWLAVRGEFVKHDPRPLFLSVRGNRMSPGVVRER 235

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  +S TQ+YT+++ ++ 
Sbjct: 236 VKRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQH- 294

Query: 307 GDWMMEIYDQTHPSITQKD 325
              + +IYD  HP   ++D
Sbjct: 295 ---LAKIYDSAHPRAKKRD 310


>gi|104783227|ref|YP_609725.1| site-specific tyrosine recombinase XerD [Pseudomonas entomophila
           L48]
 gi|95112214|emb|CAK16941.1| site-specific tyrosine recombinase, integrase family [Pseudomonas
           entomophila L48]
          Length = 298

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 152/309 (49%), Gaps = 32/309 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKR 78
            +L  L +E+GLS  T  SY  D     +F  +  E+ + +    R+L    I   ++ R
Sbjct: 11  QFLDALWLEKGLSDNTRTSYRSD---LALFNGWLQEQGVALPDAGREL----ILDHLAWR 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q    RS  R LSG++ F +YL + ++      L +   +    LP++L+E       
Sbjct: 64  FDQAYKPRSTARFLSGVRGFYRYLLRERMIAVDPTLQVDMPQLGRPLPKSLSEADV---- 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL      + I  R+ A+L +LY CGLR++E +SLT   +   Q  LR+ GKG K R
Sbjct: 120 -EALLKAPDLGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKER 178

Query: 199 IVPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +VP+           +R    E  +  P D+       LF  +RG+ +    F   I+  
Sbjct: 179 LVPMGEEAVLWLERYLRDGRAELLNGRPSDV-------LFPSLRGEQMTRQTFWHRIKHH 231

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            R  G+    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        +
Sbjct: 232 ARVAGIDKPLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR----L 287

Query: 311 MEIYDQTHP 319
            +++ Q HP
Sbjct: 288 QQLHAQHHP 296


>gi|54399934|gb|AAV34206.1| site-specific recombinase [Pseudomonas fluorescens]
          Length = 298

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 153/309 (49%), Gaps = 32/309 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKR 78
            +L  L +E+GLS  T  +Y  D     +F  +  E  +  I   R+L    I   ++ R
Sbjct: 11  QFLDALWLEKGLSDNTRDAYRSD---LALFNGWLQENHLELINAGREL----ILDHLAWR 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q    RS  R LSG++ F +YL + K+      L +   +    LP++L+E       
Sbjct: 64  LEQNYKPRSTARFLSGLRGFYRYLLREKLIAVDPTLRVEMPQLGRPLPKSLSEADV---- 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL     ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K R
Sbjct: 120 -EALLAAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKER 178

Query: 199 IVPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +VP+           VR A  E     P D        LF  +RG+ +    F   I+  
Sbjct: 179 LVPMGEEAIVWVERYVRDARHELLGGRPSD-------ALFPSLRGEQMTRQTFWHRIKHQ 231

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  G+  S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        +
Sbjct: 232 AKVAGINKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----L 287

Query: 311 MEIYDQTHP 319
            +++ + HP
Sbjct: 288 QDLHAKHHP 296


>gi|269215886|ref|ZP_06159740.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122]
 gi|269130836|gb|EEZ61912.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122]
          Length = 315

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 98/317 (30%), Positives = 146/317 (46%), Gaps = 35/317 (11%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL   +++L  L IE+G S LT++SY  D   ++ FL     +   +   R ++   + +
Sbjct: 17  LLSSVRDFLSFLSIEKGSSDLTVRSYAADLEDYVAFL-----DSEGVHAARDVTRDALAS 71

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++    +     S++R +S +K F  +L +  +        +        LP  L+  Q
Sbjct: 72  YVADLSGRGYAAASIERHVSALKGFHAFLVRDGLVASDPACALPLPGVPARLPDVLSIDQ 131

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
             TL+D            +  RN+  L LLYGCGLR SE   L   +   D+  LRI GK
Sbjct: 132 VNTLLDQEF-----REGPLGVRNACALELLYGCGLRASELSGLDAGDAFLDEGILRIVGK 186

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-----------IRGKPLNPGV 242
           G + RIVP+  S  + +  Y         L    PL R             RG  L+   
Sbjct: 187 GSRERIVPIGGSAARCLASY---------LEDARPLLRSPRRLTPAVMLNARGGRLSRQS 237

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               +R+    +G+      HTLRHSFATHLL  G DLR+IQ +LGH  +STTQIYT+V+
Sbjct: 238 IHSIVREAGHVIGIK-DLHPHTLRHSFATHLLEGGADLRAIQEMLGHSDISTTQIYTHVD 296

Query: 303 SKNGGDWMMEIYDQTHP 319
             +    + E Y   HP
Sbjct: 297 RTH----VREEYLSAHP 309


>gi|217974605|ref|YP_002359356.1| tyrosine recombinase XerD [Shewanella baltica OS223]
 gi|217499740|gb|ACK47933.1| tyrosine recombinase XerD [Shewanella baltica OS223]
          Length = 300

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 101/300 (33%), Positives = 155/300 (51%), Gaps = 16/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L   +GLS  TL +Y  D R F     +  ++ +T+  + Q    ++RA+++ R  
Sbjct: 14  FLDDLWSSKGLSDNTLSAYRTDLRHFD---RYQGQQGVTLLAVSQ---ADVRAYLAFRVE 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     S  R LS ++ F  YL + K      +  + + K +  LP +L+E Q    VD 
Sbjct: 68  QDFARTSSARLLSSLRRFYTYLVQTKQILADPMALVESPKLTRHLPDSLSESQ----VDR 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +L   + E   ++ R+ A+L LLY  GLR+SE + LT + +   Q  +RI GKG K R+V
Sbjct: 124 LLSEPNVEDA-VECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLV 182

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           PL       +  Y      +L  N Q  + F   RG+ +    F   I+      G+  +
Sbjct: 183 PLGELAITEVENYMKFARQELLGNKQSDVVFPSKRGQMMTRQTFWHRIKLYALRAGIETA 242

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ Q HP
Sbjct: 243 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARAR----LQELHQQHHP 298


>gi|313676501|ref|YP_004054497.1| integrase family protein [Marivirga tractuosa DSM 4126]
 gi|312943199|gb|ADR22389.1| integrase family protein [Marivirga tractuosa DSM 4126]
          Length = 293

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 153/302 (50%), Gaps = 12/302 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           R  + + L+ E+  S  TL SY+ D  QF    + Y E++     + +  +  IR+++  
Sbjct: 2   RDTFFKYLQFEKRYSSHTLVSYQNDLDQF----SKYLEDQFQTCDLLKAEHRHIRSWVVN 57

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +  RS+ R +  ++SF K+   R+   ++    ++ LK +  LP+ + EK+    
Sbjct: 58  LMQDGVKPRSINRKIIALRSFYKFAISREAIHQNPTQKIKALKSAKELPQFVQEKE---- 113

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +DN+L H      +   R++ I+ LLYG G+R++E + L   +      T+RI GKG+K 
Sbjct: 114 MDNLLSHIVFPEDFEGNRDALIMELLYGTGMRLAELIGLKEDDFNRQAGTIRILGKGNKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VP    + + + +Y        + N Q PL     G    P +  R  ++    +   
Sbjct: 174 RVVPFHLEIGRRLDKYIFHKKELFSHNGQSPLIVSNNGSKAYPMLINRITKKYLDQVTTI 233

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FATHLL+ G DL +++ +LGH  L+ TQ+YT+    N  D + +++DQ 
Sbjct: 234 SKRSPHVLRHTFATHLLNKGADLNAVKDMLGHSSLAATQVYTH----NSLDKLKKVFDQA 289

Query: 318 HP 319
           HP
Sbjct: 290 HP 291


>gi|293376592|ref|ZP_06622820.1| tyrosine recombinase XerD [Turicibacter sanguinis PC909]
 gi|292644818|gb|EFF62900.1| tyrosine recombinase XerD [Turicibacter sanguinis PC909]
          Length = 305

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 102/307 (33%), Positives = 165/307 (53%), Gaps = 17/307 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L +L I+RGLS  T  SYE D  ++L++L     +  ++  + ++    ++ ++    
Sbjct: 11  DFLAHLLIDRGLSLNTKISYERDLTEYLLYL-----QNQSVHQLDEIRREHVQQYLITLY 65

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +  +S+ R LS I+SF +YL   KI+      N   L +S  L R L E  ++  V+
Sbjct: 66  ERNLNTKSVARHLSAIRSFHQYLMIEKISNT----NPCELIESPKLKRHLPEILSIDEVE 121

Query: 140 NVLLHTSHETKWI-DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           ++L  +S  TK + D RN A++ L+Y  GLR+SE L L   ++      +R  GKGDK R
Sbjct: 122 HLL--SSFNTKTVNDIRNKAMVELMYASGLRVSELLQLKLDDVHLSMMFVRCVGKGDKER 179

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVP+     + +  Y D     L       LF    G+ +    F + +++  +  G+  
Sbjct: 180 IVPIGEVATELLQLYLDTARPKLLKKSNDWLFLNRFGEVMTRQGFWKILKKQAKEAGIEK 239

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRHSFATHL+ NG DLR +Q +LGH  +STTQIYT+++ ++  D    +YD  H
Sbjct: 240 EISPHKLRHSFATHLIENGVDLRLVQEMLGHSDISTTQIYTHISKEHLKD----VYDLYH 295

Query: 319 PSITQKD 325
           P  +QKD
Sbjct: 296 PR-SQKD 301


>gi|126173088|ref|YP_001049237.1| tyrosine recombinase XerD [Shewanella baltica OS155]
 gi|125996293|gb|ABN60368.1| tyrosine recombinase XerD [Shewanella baltica OS155]
          Length = 309

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 101/300 (33%), Positives = 155/300 (51%), Gaps = 16/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L   +GLS  TL +Y  D R F     +  ++ +T+  + Q    ++RA+++ R  
Sbjct: 23  FLDDLWSSKGLSDNTLSAYRTDLRHFD---RYQGQQGVTLLAVSQ---ADVRAYLAFRVE 76

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     S  R LS ++ F  YL + K      +  + + K +  LP +L+E Q    VD 
Sbjct: 77  QDFARTSSARLLSSLRRFYTYLVQTKQILADPMALVESPKLTRHLPDSLSESQ----VDR 132

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +L   + E   ++ R+ A+L LLY  GLR+SE + LT + +   Q  +RI GKG K R+V
Sbjct: 133 LLSEPNVEDA-VECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLV 191

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           PL       +  Y      +L  N Q  + F   RG+ +    F   I+      G+  +
Sbjct: 192 PLGELAITEVESYMKFARQELLGNKQSDVVFPSKRGQMMTRQTFWHRIKLYALRAGIETA 251

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ Q HP
Sbjct: 252 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARAR----LQELHQQHHP 307


>gi|189499779|ref|YP_001959249.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides BS1]
 gi|189495220|gb|ACE03768.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides BS1]
          Length = 305

 Score =  139 bits (349), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 98/305 (32%), Positives = 158/305 (51%), Gaps = 21/305 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L +ER  S  T+ SY  D  ++L+F+  ++E++I     + +  T+I+ FI +  
Sbjct: 15  SFLNYLTLERNFSSHTITSYANDLNRYLLFMQ-HSEKQI-----KAVVLTDIQHFIQELH 68

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +  RS+ R++S I+SF K+L +  I  E+   ++   K    LP  L+  +   L+D
Sbjct: 69  EAGLESRSISRNISAIRSFHKFLIRENILEENAAKSLHQPKPGLHLPTVLSVDEVFRLLD 128

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL       ++  R+  +L LLY  G+R+SE +++   N   D    RI GKG K R+
Sbjct: 129 APLLEKPPGKYFL--RDKVLLELLYATGVRVSELINIQQSNCYLDAGFARIFGKGSKERL 186

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYL 254
           VP+  +  + I  Y      +L LN+        LF   RGK L+       +R+L    
Sbjct: 187 VPVGHTAIEWIRRYQQ----ELRLNMANRESGDYLFLNARGKQLSRMSAWNIVRRLSSVA 242

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           GL    + HTLRH+FATHLL  G DLR++Q +LGH  +  TQIYT+++      ++ E +
Sbjct: 243 GLTKKISPHTLRHTFATHLLEGGADLRAVQEMLGHSSIIATQIYTHIDR----SFIKEAH 298

Query: 315 DQTHP 319
              HP
Sbjct: 299 KTFHP 303


>gi|308069572|ref|YP_003871177.1| Tyrosine recombinase xerD [Paenibacillus polymyxa E681]
 gi|305858851|gb|ADM70639.1| Tyrosine recombinase xerD [Paenibacillus polymyxa E681]
          Length = 317

 Score =  138 bits (348), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 155/311 (49%), Gaps = 26/311 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++Q +E E+GLS+ TL++Y+ D +QF  F      E   I+    +  + +  ++ + 
Sbjct: 9   QPFVQYMEEEKGLSRSTLEAYQRDVQQFAEFA-----ESCGIEQPDNVQRSHLVLYLGRL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + Q     ++ RS++ I+SF  +L +  IT     + +        LP+A  +K ++   
Sbjct: 64  KEQGKAAATISRSVASIRSFFHFLIREGITIHDPSVLL-------ELPKATKKKPSVLTQ 116

Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           D +  LL     T     R+ A+L LLY  G+R+SE ++L  +++  D   +   G+  K
Sbjct: 117 DEIERLLDAPDVTAPQGVRDKAMLELLYATGIRVSELIALNVRDVRTDLRFVHCGGEAGK 176

Query: 197 IRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIR 248
            R+VP+     +    Y D     L         Q+    +F  + G+ L+   F + I+
Sbjct: 177 ERVVPISREASQWAQAYMDEQRLLLLKSGQGEEAQVEQEAMFLNVSGQRLSRQGFWKMIK 236

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +  +  G+    T HTLRHSFA H+L  G DLRS+Q +LGH  LSTTQ+Y     +N   
Sbjct: 237 KYGQEAGISEDITPHTLRHSFAVHMLEGGADLRSVQEMLGHADLSTTQVYAQTARRN--- 293

Query: 309 WMMEIYDQTHP 319
            M E+Y++ HP
Sbjct: 294 -MKEVYEKHHP 303


>gi|325068736|ref|ZP_08127409.1| tyrosine recombinase XerD [Actinomyces oris K20]
          Length = 307

 Score =  138 bits (348), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 99/315 (31%), Positives = 156/315 (49%), Gaps = 27/315 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L +L +ERGLS  TL +YE D  ++L +L         I   +++S  ++  F+   
Sbjct: 2   RGYLAHLRVERGLSPHTLSAYERDLGRYLRYL-----RSAGISAPQEVSRNDVAGFLEVL 56

Query: 79  RTQKIGDRSLK-----RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           RT   G R L      R+++ ++ + K+L     T+E     +R  +    LP+AL   +
Sbjct: 57  RTGSDGARPLASSSASRTVTAVRGWHKFLLAEGTTSEDPSATVRPPQPGRRLPKALGVDE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++   +  S     +  R+ A+L +LY  G RISEA+ L   ++  D   LR+ GK
Sbjct: 117 VRRLLEAAGVDDSP----VSLRDRALLEVLYATGARISEAVGLVVDDLDTDSKLLRLFGK 172

Query: 194 GDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLR 251
           G K R+VP+     +A+  Y     P        +P +F    G+PL+       ++Q  
Sbjct: 173 GRKERVVPMGAYAWEALDAYLVRGRPVLAEKGRGVPQVFLNTLGRPLSRQSAWAVLQQAA 232

Query: 252 RYLGLPLSTTA-------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              GL  +  A       HTLRHSFATHLL+ G D+R +Q +LGH  ++TTQIYT V   
Sbjct: 233 ERAGLIGTDGADERRISPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTKVTV- 291

Query: 305 NGGDWMMEIYDQTHP 319
              D + E+Y  +HP
Sbjct: 292 ---DHLREVYATSHP 303


>gi|83643202|ref|YP_431637.1| site-specific tyrosine recombinase XerC [Hahella chejuensis KCTC
           2396]
 gi|83631245|gb|ABC27212.1| tyrosine recombinase XerC [Hahella chejuensis KCTC 2396]
          Length = 301

 Score =  138 bits (348), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 92/308 (29%), Positives = 160/308 (51%), Gaps = 15/308 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + ++  L  ER  S  T+ SY  D R+ + +      +   + + + L   ++R  +S+ 
Sbjct: 8   EAFIAYLHSERRYSVHTVSSYNRDLRRVVAYC-----DANGVASWKDLHTPQLRQALSEF 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +G RSL R LS ++ F +YL + ++  E+    +R  K +  LP  ++  QA  L+
Sbjct: 63  HRRGLGSRSLHRLLSTVRRFYEYLLRERLVYENPANGVRAPKMTKRLPATMDVDQAKQLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D+ +     E + ++ R+ AI  L Y  G+R+SE   L   ++   +   R+ GKG K R
Sbjct: 123 DSPV-----EEEELEIRDQAIAELFYTSGIRLSELAGLDLAHLDLSEGLARVLGKGGKER 177

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VP+    RKA+ ++       L +  +  +F  +RG  L+    Q  +RQ  +  G   
Sbjct: 178 LVPVGGQARKALRDWLQ-ARASLAVAGEPAVFVSLRGGRLSRRSIQERLRQWAQKKGFSG 236

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H  RHS A+HLL + GDLR++Q +LGH  +STTQIYT++N ++    + E+YD+ H
Sbjct: 237 RLYPHLFRHSCASHLLESSGDLRAVQELLGHADISTTQIYTHLNFQH----LAEVYDKAH 292

Query: 319 PSITQKDK 326
           P   ++ K
Sbjct: 293 PRARKRKK 300


>gi|308234475|ref|ZP_07665212.1| integrase family protein [Atopobium vaginae DSM 15829]
 gi|328944068|ref|ZP_08241533.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829]
 gi|327492037|gb|EGF23811.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829]
          Length = 337

 Score =  138 bits (348), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 94/293 (32%), Positives = 153/293 (52%), Gaps = 21/293 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++Q+L   + LS  T ++YE D + ++ +L   + + + I      S+ ++R+++++ 
Sbjct: 42  ESFIQHLMTTQNLSPNTTRAYETDLKAYVRWLIKNSYDLLDI------SHKQLRSYLAQL 95

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
              +   R++ R LS I+++ K+L ++ +T + +   + + K   +LP  L+E       
Sbjct: 96  YAARYASRTINRHLSAIRAWYKWLVRKGLTKKDSAAALASPKIPKTLPHVLSESSI---- 151

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL T  E      R+ A+L LLY  G RISEA  L   +I  D   +R+ GKG K R
Sbjct: 152 -EKLLATCQEDTVCGLRDRALLELLYATGCRISEAAHLCVSDISFDSKQVRLFGKGSKER 210

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQ---------LPLFRGIRGKPLNPGVFQRYIRQ 249
           IVP+ P   + IL  Y      + L+ Q           +F   RGK ++    +     
Sbjct: 211 IVPIYPECAR-ILHMYLTTARPVLLSKQKNQAQAQTNQHVFISTRGKAMSDQALRYVFEH 269

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             R   L    T HT+RHSFAT LLS+G DLRS+Q +LGH  L+TTQIYT+V+
Sbjct: 270 YMRLSHLQEIATPHTMRHSFATELLSHGADLRSVQELLGHASLATTQIYTHVS 322


>gi|170723312|ref|YP_001751000.1| site-specific tyrosine recombinase XerD [Pseudomonas putida W619]
 gi|169761315|gb|ACA74631.1| tyrosine recombinase XerD [Pseudomonas putida W619]
          Length = 298

 Score =  138 bits (348), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 99/309 (32%), Positives = 152/309 (49%), Gaps = 32/309 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKR 78
            +L  L +E+GLS  T  SY  D     +F  +  +  + +    R+L    I   ++ R
Sbjct: 11  QFLDALWLEKGLSDNTRVSYRSD---LALFNGWLQDHGLALPAAGREL----ILDHLAWR 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q    RS  R LSG++ F +YL + K+      L +   +    LP++L+E       
Sbjct: 64  LDQGYKPRSTARFLSGLRGFFRYLLREKLIAVDPTLQIEMPQLGKPLPKSLSEADV---- 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            + LL      + I  R+ A+L +LY CGLR++E +SL    +   Q  LR+ GKG K R
Sbjct: 120 -DALLQAPDLGEAIGQRDRAMLEVLYACGLRVTELVSLALDQVNLRQGVLRVMGKGSKER 178

Query: 199 IVPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +VP+           +R   +E  +  P D+       LF  +RG+ +    F   I+  
Sbjct: 179 LVPMGEEAVLWLERYLRDGRVELLNGRPSDV-------LFPSLRGEQMTRQTFWHRIKHH 231

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            R  G+    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        +
Sbjct: 232 ARIAGIDKPLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR----L 287

Query: 311 MEIYDQTHP 319
            +++ Q HP
Sbjct: 288 QQLHAQHHP 296


>gi|167568329|ref|ZP_02361203.1| site-specific tyrosine recombinase XerC [Burkholderia oklahomensis
           C6786]
          Length = 306

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 162/319 (50%), Gaps = 33/319 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L NL   R LS  TL++Y  +  +         ++    + +  L+  ++R  +++  
Sbjct: 8   DYLSNLRHVRKLSDHTLRAYAHELDEL--------KKLANGRPLESLTAVDVRGAVARAH 59

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +  RS+   LS  ++F ++  +      + +  +R  K++  LP+AL+   A  L+D
Sbjct: 60  AGGLSARSISHRLSAWRAFYRWFAQHVEMNANPVATIRAPKRAKMLPKALSVDDAAALMD 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT----------PQNIMD-DQSTL 188
                T+        R+ AIL L Y  GLR++E + L            +  +D  ++ +
Sbjct: 120 APASGTAESL-----RDHAILELFYSSGLRLAELIGLDVAYVKIGEYRSEGWLDLAEAEV 174

Query: 189 RIQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            ++GKGDK R VP+    RKAI  L  +     +   +   PLF  +RG  ++PGV +  
Sbjct: 175 TVRGKGDKERKVPV---GRKAIDALNAWLAVRGEFVRHDPHPLFLSVRGNRMSPGVVRGR 231

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  +S TQ+YT+++ ++ 
Sbjct: 232 VKRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQH- 290

Query: 307 GDWMMEIYDQTHPSITQKD 325
              + +IYD  HP   ++D
Sbjct: 291 ---LAKIYDSAHPRAKKRD 306


>gi|167561111|ref|ZP_02354027.1| site-specific tyrosine recombinase XerC [Burkholderia oklahomensis
           EO147]
          Length = 306

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 162/319 (50%), Gaps = 33/319 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L NL   R LS  TL++Y  +  +         ++    + +  L+  ++R  +++  
Sbjct: 8   DYLSNLRHVRKLSDHTLRAYAHELDEL--------KKLANGRPLESLTAVDVRGAVARAH 59

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +  RS+   LS  ++F ++  +      + +  +R  K++  LP+AL+   A  L+D
Sbjct: 60  AGGLSARSISHRLSAWRAFYRWFAQHVEMNANPVATIRAPKRAKMLPKALSVDDAAALMD 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT----------PQNIMD-DQSTL 188
                T+        R+ AIL L Y  GLR++E + L            +  +D  ++ +
Sbjct: 120 APASGTAESL-----RDHAILELFYSSGLRLAELIGLDVAYVKIGEYRSEGWLDLAEAEV 174

Query: 189 RIQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            ++GKGDK R VP+    RKAI  L  +     +   +   PLF  +RG  ++PGV +  
Sbjct: 175 TVRGKGDKERKVPV---GRKAIDALNAWLAVRGEFVRHDPHPLFLSVRGNRMSPGVVRGR 231

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  +S TQ+YT+++ ++ 
Sbjct: 232 VKRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQH- 290

Query: 307 GDWMMEIYDQTHPSITQKD 325
              + +IYD  HP   ++D
Sbjct: 291 ---LAKIYDSAHPRAKKRD 306


>gi|317128498|ref|YP_004094780.1| tyrosine recombinase XerD [Bacillus cellulosilyticus DSM 2522]
 gi|315473446|gb|ADU30049.1| tyrosine recombinase XerD [Bacillus cellulosilyticus DSM 2522]
          Length = 296

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 159/305 (52%), Gaps = 14/305 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +E + +L  L +ERGLSK T ++Y  D   ++ ++  +  +K     + +++   I  ++
Sbjct: 3   QELREFLHYLIVERGLSKNTTEAYNRDLTAYIQYIESHENKK----DVNEINRPAIMQYL 58

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
              +       ++ R++S I++F ++L + ++++    +++   K+   LP+ L+  +  
Sbjct: 59  YFLKDNGRAPTTITRNISSIRAFHQFLLRERLSSSDPTIHISRPKQEKKLPKILSTTEVE 118

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+       S +   ++ RN A+L +LY  G+R+SE   L+  ++  D   +R  GKG+
Sbjct: 119 ALIS-----ASVKNPALNIRNKAMLEVLYATGIRVSELCQLSLSDLHLDMGFIRCIGKGN 173

Query: 196 KIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K RI+P+     KA+  Y     P  L       LF    G  ++   F + I+ L +  
Sbjct: 174 KERIIPIGNVATKALETYLQKSRPTLLKKQAHSILFVNHHGNKMSRQGFWKIIKLLAKEA 233

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT++        M ++Y
Sbjct: 234 NIKKELTPHTLRHSFATHLLENGADLRAVQEMLGHVDISTTQIYTHITKTR----MKDVY 289

Query: 315 DQTHP 319
            + HP
Sbjct: 290 SRYHP 294


>gi|238028907|ref|YP_002913138.1| site-specific tyrosine recombinase XerC [Burkholderia glumae BGR1]
 gi|237878101|gb|ACR30434.1| Site-specific recombinase XerC [Burkholderia glumae BGR1]
          Length = 306

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 159/324 (49%), Gaps = 45/324 (13%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L+  R LS  TL+ Y  +      F         + + +  L+  ++R+ +++   
Sbjct: 9   YLSYLQHVRQLSAHTLRGYAHELAALTAF--------ASGRPLASLTAADMRSAVARAHA 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS+   LS  ++F ++  +R     + +  +R  K++ +LP+AL+   A TL+++
Sbjct: 61  GGLSARSIAHRLSAWRAFYRWYAQRVEMPANPVATVRAPKRARALPKALSVDDANTLMES 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTLR 189
               T         R+ AI+ L Y  GLR++E + L    +  D           ++ L 
Sbjct: 121 AFPDTPEGL-----RDRAIVELFYSSGLRLAELVGLDVHYVNADGYRSAGWLDRGEAELS 175

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--------LPLFRGIRGKPLNPG 241
           + GKG K R VP+    RKA      L   D  L ++         PLF  +RG  + PG
Sbjct: 176 VLGKGGKERKVPV---GRKA------LEALDAWLAVREGWVRGDPHPLFLSVRGNRMAPG 226

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           V +  +++  R  G+P +   H LRHSFATH+L + GDLR++Q +LGH  +S TQ+YT++
Sbjct: 227 VVRERVKRAARVAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSL 286

Query: 302 NSKNGGDWMMEIYDQTHPSITQKD 325
           + ++    +  IYD  HP   ++D
Sbjct: 287 DFQH----LARIYDSAHPRAKKRD 306


>gi|56963547|ref|YP_175278.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16]
 gi|56909790|dbj|BAD64317.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16]
          Length = 297

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 156/302 (51%), Gaps = 15/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  +++E+GLS  T++SY  D +Q+  +L     +K  I    ++  + ++ ++   
Sbjct: 8   QEFIHFIKVEKGLSPNTIESYARDLKQYGAYL-----KKRGIDQFAKVDRSTLQHYLFTL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +       ++ R+++ +++  ++L + K T     L +   +    LP  L+ ++     
Sbjct: 63  KETGKSSATIARNVTTLRALHQFLYREKWTDHDPTLWIETPRIDKKLPGVLSIEEV---- 118

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            + LL     +     RN A+L LLY  G+R++E +SL   ++      +R+ GKG+K R
Sbjct: 119 -DALLAAPDSSTPFGVRNKAMLELLYASGMRVTELISLGLDDVHLSMGFVRVIGKGNKER 177

Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           IVPL     KA+  Y +     L        LF    G+P++   F + ++QL +   + 
Sbjct: 178 IVPLGKEATKALNTYLERGRGALLKHERHDKLFVNHHGRPISRQGFWKIMKQLAKTANIE 237

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + HTLRHSFATHLL NG DLRS+Q +LGH  LSTTQIYT+V        M ++Y + 
Sbjct: 238 KDFSPHTLRHSFATHLLENGADLRSVQEMLGHADLSTTQIYTHVTKTR----MKDVYSRY 293

Query: 318 HP 319
           HP
Sbjct: 294 HP 295


>gi|51892959|ref|YP_075650.1| recombinase [Symbiobacterium thermophilum IAM 14863]
 gi|51856648|dbj|BAD40806.1| recombinase [Symbiobacterium thermophilum IAM 14863]
          Length = 294

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 150/302 (49%), Gaps = 16/302 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
             ++  L +ERGL+  TL+SY  D RQ+  +L    E+++ +  + + +      ++ K 
Sbjct: 6   HEFINYLSVERGLATNTLESYGRDLRQYYQYLG---EDQVDLDAVSRSTIINYLMYLQK- 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     ++ R L+ +K+F ++L + K        N+ + K    LPR L   +     
Sbjct: 62  --QGKATATIARRLAALKAFYQFLVREKRIKTDPTANLESPKLEKRLPRVLTVSEV---- 115

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL     +     R+ A+L LLY  G+R+SE +SL  +++  +   +R  GKG K R
Sbjct: 116 -ERLLAQPDPSLPAGLRDRAMLELLYATGIRVSELVSLNIEDVNLETGYIRCTGKGSKER 174

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           IVPL     K + EY     P  +    +  LF    G  L    F + +++      + 
Sbjct: 175 IVPLGSLAIKWVKEYLQQGRPKLVKDREEAALFVNHHGHRLTRQGFWKIVKKYAEDARID 234

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT+V        + E+Y +T
Sbjct: 235 KEITPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHVTKGR----LKEVYART 290

Query: 318 HP 319
           HP
Sbjct: 291 HP 292


>gi|299769077|ref|YP_003731103.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1]
 gi|298699165|gb|ADI89730.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1]
          Length = 310

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 167/309 (54%), Gaps = 30/309 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+  +I+   S+ T+ +YE D + FL F      +      +R +  +++R ++++R  
Sbjct: 15  WLKERKIQ-NQSEHTITAYERDVKSFLEFCELKQID------LRNIEASDLREYLAQRVE 67

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           Q ++   S++R L+ I+ F+K+ ++ K   E N  +   LK+    PR L     +  V 
Sbjct: 68  QDQLSSSSMQRHLTSIRQFMKWAEQGKYL-EINPTDDFKLKRQ---PRPLPGMIDIETV- 122

Query: 140 NVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           N +L  S   K ID     R+ A+L LLY  GLR++E   LT ++I  ++  +RI GKG+
Sbjct: 123 NQILDQSMPEKPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGN 182

Query: 196 KIRIVPLLPSVRKAILEYYDLCP-----FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           K RIVP     ++++L +  +       FD N  +    F   RG  L P   ++ ++  
Sbjct: 183 KTRIVPFGKKAKESLLNWLKIYKIWKGHFDQNAFV----FISQRGGALTPRQIEKRVKLQ 238

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  G+ +    H LRH FA+H+LS+ GDLRS+Q +LGH  LSTTQIYT+++     D +
Sbjct: 239 AQRAGVNVDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHL 294

Query: 311 MEIYDQTHP 319
            ++YD+ HP
Sbjct: 295 AQVYDRAHP 303


>gi|298208960|ref|YP_003717139.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559]
 gi|83848887|gb|EAP86756.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559]
          Length = 298

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/311 (32%), Positives = 167/311 (53%), Gaps = 27/311 (8%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           LK+ Q++L+   IERGLS  +++SY  D  + + FL     EK  ++T    S  +I A 
Sbjct: 7   LKDYQHYLK---IERGLSLNSIKSYSYDVEKLMKFL-----EKNDLKT----SPLKIDAN 54

Query: 75  ISKR----RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           I+K       + + +RS  R +SG+KSF  YL    +  +    N  +L +S  + R L 
Sbjct: 55  ITKAFVYDVAKHMNERSQARLISGLKSFFNYL----VFEDYRETNPVDLIESPRIGRKLP 110

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           +  +L  +DN++ H    +K    RN A++  LY CGLR+SE ++L   ++  ++  +++
Sbjct: 111 DTLSLEEIDNLIAHID-LSKPEGERNRAMIDTLYSCGLRVSELITLNLSDLFFEEGFIKV 169

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            GKG+K R VP+    +K I  Y        D+    +  LF   RG+ L   +    ++
Sbjct: 170 TGKGNKQRFVPIAEHTQKLISIYKTEIRNHQDIKKGHEDTLFLNRRGRGLTRAMIFTIVK 229

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            L    GL  + + HT RHSFATHLL NG DLR+IQ +LGH  ++TT+IY +++  +   
Sbjct: 230 NLSEKCGLQKTISPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEIYMHLDQTH--- 286

Query: 309 WMMEIYDQTHP 319
            + ++ +Q HP
Sbjct: 287 -LRDVVNQFHP 296


>gi|110639086|ref|YP_679295.1| site-specific recombinase [Cytophaga hutchinsonii ATCC 33406]
 gi|110281767|gb|ABG59953.1| site-specific recombinase [Cytophaga hutchinsonii ATCC 33406]
          Length = 299

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/297 (33%), Positives = 154/297 (51%), Gaps = 15/297 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L++ER LS  ++++YE D  +F+ FL   TE  +      Q+    I+ F+       + 
Sbjct: 14  LKLERSLSGNSVEAYEHDVIKFMQFLEL-TEPSVGPL---QVKGKHIQLFLEYITELGMS 69

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R LSGIKSF ++L   +I  E    +  +L  S  L R L +  +   ++ +LL 
Sbjct: 70  AYSQARILSGIKSFFRFLLMEEIRDE----DPSSLIDSPKLGRKLPDTLSFPEIEQILLA 125

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
               T     RN A+L  LY CGLR+SE   L   N+  D   +++ GKG+K R+VP+  
Sbjct: 126 IDLSTPE-GMRNRAMLETLYSCGLRVSELTDLKISNLFFDDGFVKVLGKGNKERLVPIGR 184

Query: 205 SVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
             RK I  Y +   C  D+    +  +F   RG  L+  +    I+ L   +GL  + + 
Sbjct: 185 DARKYIGMYRNEVRCHLDIVKGAENYVFLNRRGNKLSRVMVFTIIKNLAVKIGLKKTVSP 244

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HT RHSFATHL+  G DLR++Q +LGH  ++TT+IYT+++     D++ +I    HP
Sbjct: 245 HTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLDR----DYLQQIIKDFHP 297


>gi|74318396|ref|YP_316136.1| tyrosine recombinase XerD [Thiobacillus denitrificans ATCC 25259]
 gi|74057891|gb|AAZ98331.1| tyrosine recombinase XerD [Thiobacillus denitrificans ATCC 25259]
          Length = 296

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/297 (31%), Positives = 150/297 (50%), Gaps = 15/297 (5%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           +L +E GL++LTL +Y  D R F  +L     +K   +++  ++  ++ A++  R    +
Sbjct: 12  HLWLEDGLAELTLAAYRRDLRSFAGWL-----DKTRARSLDAVAPGDVEAYLGWRFAHHV 66

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
           G RS  R  S +K F +YL +  +      LN+   K   +LP +L+E    T V+ +L 
Sbjct: 67  GPRSAARYTSALKRFYRYLLRENLIAADPTLNLDRPKLPRALPASLSE----TDVERLLE 122

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
               +T     R+ A+L  LY  GLR+SE + L    +  D   LR+ GKG+K R+VPL 
Sbjct: 123 RADSDTPQ-GLRDRAMLETLYATGLRVSELVGLKLNALNLDDGVLRVTGKGNKDRLVPLG 181

Query: 204 PSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
               + +  Y       L    +   +F   RG  +    F   I++     G+    + 
Sbjct: 182 EEAVRRLRHYLAEARSQLLRRQVSDAVFVTPRGAAMTRQAFWYLIKRRAAAAGVTRQLSP 241

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     M  ++   HP
Sbjct: 242 HTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARER----MKRLHAAHHP 294


>gi|85711580|ref|ZP_01042638.1| Site-specific recombinase XerC [Idiomarina baltica OS145]
 gi|85694732|gb|EAQ32672.1| Site-specific recombinase XerC [Idiomarina baltica OS145]
          Length = 302

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 161/309 (52%), Gaps = 17/309 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WLQ LE ERGL++LT+++Y     Q L  +     ++  ++   QL+ +     +   R 
Sbjct: 10  WLQQLEGERGLAQLTIKNY-----QRLTGIDIEQLDRQGVEHAHQLTRSIFERLLVGWRR 64

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +G+RS+   LS  ++F++Y+   +   +  +  ++  K    LP+ L+       VD+
Sbjct: 65  DGLGERSIALKLSAWRTFVQYMLDYQHLNDDPLSGLKAPKIPKRLPKNLD-------VDS 117

Query: 141 VLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           +            A R+SA++ LLY  GLR++E +SL   +I      LR+ GKG K RI
Sbjct: 118 ISHLLELPLDDELAIRDSAMMELLYSSGLRLAELVSLDMDSIDLRYGQLRVVGKGSKTRI 177

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VP+     KAI  +  +    L +  ++ LF   R + ++    Q+ +    +  G+  +
Sbjct: 178 VPVGKIAIKAIQRWLKVRANWLAMRPEVALFISQRNQRISQRTVQQRLNFWGKQQGVVGN 237

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRHSFA+H+L + GDLR++Q +LGH  LSTTQ+YT+++ K     + E+YD  HP
Sbjct: 238 LHPHKLRHSFASHMLESSGDLRAVQELLGHANLSTTQVYTHLDFKR----LAEVYDSAHP 293

Query: 320 SITQKDKKN 328
             T+  K +
Sbjct: 294 RATKGKKSS 302


>gi|117921769|ref|YP_870961.1| tyrosine recombinase XerD [Shewanella sp. ANA-3]
 gi|117614101|gb|ABK49555.1| tyrosine recombinase XerD [Shewanella sp. ANA-3]
          Length = 300

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/300 (33%), Positives = 156/300 (52%), Gaps = 16/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L   +GLS  TL +Y  D R F  +     ++   ++ I ++   ++RA+++ R  
Sbjct: 14  FLDDLWSSKGLSDNTLSAYRTDLRHFDRY-----QQGQGLRLI-EVGQADVRAYLAYRVE 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q+    S  R LS ++ F  YL + K      +  + + K S  LP +L+E Q    VD 
Sbjct: 68  QQFARTSSARLLSSLRRFYTYLLQTKQIAGDPMALIESPKLSRQLPDSLSESQ----VDR 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +L   + +   ++ R+ A+L LLY  GLR+SE + LT + +   Q  +RI GKG K R+V
Sbjct: 124 LLAEPNVDDP-VECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLV 182

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+       +  Y     ++L  NIQ  + F   R + +    F   I+      G+   
Sbjct: 183 PMGELAITEVERYLSFARYELLGNIQSDVVFPSKRAQMMTRQTFWHRIKLYASRAGIETE 242

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ Q HP
Sbjct: 243 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARAR----LQELHQQHHP 298


>gi|330807709|ref|YP_004352171.1| Site-specific tyrosine recombinase XerD [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327375817|gb|AEA67167.1| Site-specific tyrosine recombinase XerD [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 298

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 154/309 (49%), Gaps = 32/309 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKR 78
            +L  L +E+GLS  T  +Y  D     +F  +  E  +  I   R+L    I   ++ R
Sbjct: 11  QFLDALWLEKGLSDNTRDAYRSD---LALFNGWLQENHLELINAGREL----ILDHLAWR 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q    RS  R LSG++ F +YL + K+      L +   +    LP++L+E       
Sbjct: 64  LEQNYKPRSTARFLSGLRGFYRYLLREKLIAVDPTLRVEMPQLGRPLPKSLSEADV---- 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL     ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K R
Sbjct: 120 -EALLAAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKER 178

Query: 199 IVPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +VP+           +R A  E     P D+       LF  +RG+ +    F   I+  
Sbjct: 179 LVPMGEEAIVWVERYMRDARHELLGGRPSDV-------LFPSLRGEQMTRQTFWHRIKHQ 231

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  G+  S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        +
Sbjct: 232 AKVAGINKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----L 287

Query: 311 MEIYDQTHP 319
            +++ + HP
Sbjct: 288 QDLHAKHHP 296


>gi|289435303|ref|YP_003465175.1| integrase/recombinase XerD [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171547|emb|CBH28093.1| integrase/recombinase XerD [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 297

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/308 (30%), Positives = 161/308 (52%), Gaps = 27/308 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L +E+GLS  T+++YE D   F+ ++   T   +T      L  ++I  F++  R
Sbjct: 7   DFLHFLIVEKGLSANTIKAYERDLHYFVSYIN--TARPLT--DPNTLERSDIVGFMAFAR 62

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +    RS+ R ++ ++SF  YL      +   ++ +   K++  LP+ LN       +D
Sbjct: 63  KEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLN-------LD 115

Query: 140 NV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +V  LL +S  +  +  R+ A++ +LY  GLR++E + L   ++      ++  GKGDK 
Sbjct: 116 DVELLLSSSDTSTPLGLRDQAMMEILYATGLRVTELVQLKMDDLHLQMGFIQTIGKGDKE 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI------RGKPLNPGVFQRYIRQLR 251
           RI+PL  +    + +Y +    +    ++ P +R         G+ L    F + ++ + 
Sbjct: 176 RIIPLGKTATTVLEQYLE----EARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIA 231

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +  G+    T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT+V        + 
Sbjct: 232 KESGIEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLR----LK 287

Query: 312 EIYDQTHP 319
           ++Y Q HP
Sbjct: 288 DVYKQFHP 295


>gi|170017033|ref|YP_001727952.1| site-specific recombinase XerD [Leuconostoc citreum KM20]
 gi|169803890|gb|ACA82508.1| Site-specific recombinase XerD [Leuconostoc citreum KM20]
          Length = 298

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 163/301 (54%), Gaps = 16/301 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +++  + IERGLS+ T+ SY  D  QF ++L+   +E + +    ++ +  + +++++ R
Sbjct: 11  DYIHYIRIERGLSENTITSYRQDLNQFGMYLS---QEHLLLG---EVDHIVVLSWLNRLR 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           T    + S+ R ++ ++ F  YL +  + T + + +++  KK+  LP  L+ ++  TL+ 
Sbjct: 65  TNGKSNSSVIRMVTSLRRFFGYLTQENMITHNPMSHVKPPKKAAHLPAVLSFEEIDTLLG 124

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             +  T      +  RN  +L ++Y  GLR+SE ++L   ++      ++  GKGDK RI
Sbjct: 125 VPVPSTP-----LGMRNRTLLEVMYATGLRVSELVNLKMSDLHIQLGLIQTLGKGDKERI 179

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +P+       +  Y+      L    + P +F   RG  L      + I++L    G+  
Sbjct: 180 IPIGEVAVDWLERYFAGARLTLLKAQESPYVFVNDRGGQLTRQGVWKIIKKLVLEAGITK 239

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HTLRHSFATH+L NG DLR +Q +LGH  +STTQIYT+++ K     + E+YD+ H
Sbjct: 240 DVSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKR----LSEVYDEYH 295

Query: 319 P 319
           P
Sbjct: 296 P 296


>gi|163788788|ref|ZP_02183233.1| 3-dehydroquinate dehydratase [Flavobacteriales bacterium ALC-1]
 gi|159876025|gb|EDP70084.1| 3-dehydroquinate dehydratase [Flavobacteriales bacterium ALC-1]
          Length = 302

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/297 (31%), Positives = 160/297 (53%), Gaps = 12/297 (4%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L+IERGLSK ++++Y  D ++ +++L    EE   I +        ++ FI    ++ + 
Sbjct: 14  LQIERGLSKNSIENYCYDIKKLIVYL----EENALIVSPITTDNAIVKQFIYTI-SKSLN 68

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNM-RNLKKSNSLPRALNEKQALTLVDNVLL 143
            RS  R +SG+++F  YL       E+N L++  + +    LP  L+      LV+N+ L
Sbjct: 69  ARSQARLISGLRNFFDYLIFENYR-ETNPLDLIESPRIGRKLPDTLSIDDIDNLVNNIDL 127

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
              +    +  RN AI+  LY CGLR+SE + L   ++  D+  +++ GKGDK R VP+ 
Sbjct: 128 SYQYNGVNLGERNRAIIETLYSCGLRVSELIELKISDLFFDEGFIKVTGKGDKQRFVPIG 187

Query: 204 PSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            + +  I  +  +    ++  N +  LF   +GK L   +    I++L    G+  + + 
Sbjct: 188 LTTQNYIAIWIGIRNHIEVQPNSKDNLFLNYKGKKLTRAMIFTIIKKLVEKSGITKNVSP 247

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HT RHSFATHLL NG DLR+IQ +LGH  ++TT+IY +V+  +  D    + ++ HP
Sbjct: 248 HTFRHSFATHLLENGADLRAIQMMLGHESITTTEIYMHVDRSHLSD----VLNKFHP 300


>gi|29840494|ref|NP_829600.1| site-specific tyrosine recombinase XerD [Chlamydophila caviae GPIC]
 gi|29834843|gb|AAP05478.1| integrase/recombinase XerD [Chlamydophila caviae GPIC]
          Length = 298

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 153/308 (49%), Gaps = 31/308 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + ++  L ++RGL + ++ +Y  D   FL   A  + E+I        S   +  F+ + 
Sbjct: 12  EQFILFLSVDRGLCRNSISAYCQDITLFLKINAITSTEEI--------SQDSVYLFVQQL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +K  + +L R L  +K F ++LK+ K+     ++    + K   LP  L  K+     
Sbjct: 64  HKRKEAESTLARRLIALKVFFRFLKEAKLLDHPPLIEHPKIWKR--LPSVLTPKEV---- 117

Query: 139 DNVLLHTSHETK---WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            + LL  + ++K    I AR++AIL  LY  G+R+SE   L   ++ DD   LR+ GKG 
Sbjct: 118 -DALLSAAQQSKTSPIISARDTAILLTLYSTGIRVSELCDLCISDVSDD--FLRVTGKGS 174

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLR 251
           K R+VPL     KAI  Y  LCPF        P    LF  +RG  L      R I    
Sbjct: 175 KTRLVPLGKVACKAIDAY--LCPFRETFQKLHPEEHHLFLSVRGHRLERSCVWRRIHYYA 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           + +      + H+LRH+FATHLL N  DLR IQ +LGH R+++T+IYT+V      D +M
Sbjct: 233 KQVTHK-RVSPHSLRHAFATHLLDNKADLRIIQEMLGHARIASTEIYTHV----AADTLM 287

Query: 312 EIYDQTHP 319
           E +   HP
Sbjct: 288 ENFLSYHP 295


>gi|296110353|ref|YP_003620734.1| site-specific recombinase, phage integrase family [Leuconostoc
           kimchii IMSNU 11154]
 gi|295831884|gb|ADG39765.1| site-specific recombinase, phage integrase family [Leuconostoc
           kimchii IMSNU 11154]
          Length = 304

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/289 (30%), Positives = 144/289 (49%), Gaps = 11/289 (3%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +E+Q +   L  ER  S LTL++Y  D  +F+ FLA    +       R +   ++R ++
Sbjct: 4   REQQLYRIYLVSERQYSPLTLKAYLSDIDEFINFLA----QNGGFTNFRAVQPLDVRVYL 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    + +   S+ R +S ++ F +++   +   ++   N+   K  N LP    E +  
Sbjct: 60  NDLYERHLARTSISRKISSLRMFYQFMVANQFVIDNPFENIALRKHQNHLPEFFYETEMA 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           TL D    +   +  W   RN+A+L  LY  G R++E  +LT   +   Q  + I GKG+
Sbjct: 120 TLFDTA--YNQEDKLW--QRNAALLEFLYATGARVTEIATLTIAQLDFSQRLVLIHGKGN 175

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRR 252
           K R VP      +A+++Y      DL      P   +F   RG+P+        + QL +
Sbjct: 176 KDRYVPFGHFAAQALMQYLSETRADLTAKQPAPHQVVFVNHRGEPITAAGITYILNQLMQ 235

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              L      H LRH+FATHLL+NG D+R++Q +LGH  LSTTQ+YT+V
Sbjct: 236 RSALTGKIHPHMLRHTFATHLLNNGADMRTVQELLGHVNLSTTQMYTHV 284


>gi|189347316|ref|YP_001943845.1| tyrosine recombinase XerD [Chlorobium limicola DSM 245]
 gi|189341463|gb|ACD90866.1| tyrosine recombinase XerD [Chlorobium limicola DSM 245]
          Length = 306

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 161/302 (53%), Gaps = 13/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N+L +L +ER  S  T +SY  D +++L+F+    E K     I  +   +IR FIS+ 
Sbjct: 15  ENFLNHLSVERNFSVNTRESYRNDLKRYLLFMQ--DENK----AIGAVETADIRKFISEL 68

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +   +L R++S I+S  K+L   +    +    ++  K + +LP  L+  + ++L+
Sbjct: 69  HATGLEASTLGRNISAIRSLHKFLLIERTLETNPAETIQQPKLAKNLPDVLSLSEVMSLL 128

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +   L  +   K++  R+ AIL  LY  G+R+SE  +L  Q++  D   +RI GKG K R
Sbjct: 129 E-APLQQNPPGKFL-LRDKAILEFLYAAGVRVSELTALQQQHLYFDAGFVRILGKGSKER 186

Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+  +  +AI +Y +     +     +  LF   RGK L+       +R+     G+ 
Sbjct: 187 LVPVGNAAIEAITQYQNQLRIGMVTKESEDCLFLNARGKKLSRMAVYLMVREYAALAGIR 246

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + + HTLRH+FATHLL  G DLR++Q +LGH  +  TQIYT+++      ++ E++   
Sbjct: 247 KNISPHTLRHTFATHLLEGGADLRAVQEMLGHSSILATQIYTHIDR----SFIREVHKTF 302

Query: 318 HP 319
           HP
Sbjct: 303 HP 304


>gi|322421383|ref|YP_004200606.1| tyrosine recombinase XerC [Geobacter sp. M18]
 gi|320127770|gb|ADW15330.1| tyrosine recombinase XerC [Geobacter sp. M18]
          Length = 292

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/308 (33%), Positives = 145/308 (47%), Gaps = 32/308 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +   LE ER +S  TL +Y  D  QF   L+ + E         Q+ +  IR ++++ 
Sbjct: 6   EQFCSYLETERNVSPHTLAAYRSDLEQFASSLSRHGEP-----LPEQVDHLAIRRYLAQL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S+ R LS I++  ++L +     ++    +   KK   LP  LN  Q   LV
Sbjct: 61  HKGH-AKSSIGRKLSAIRALFRFLLREGRLEKNPAELVSTPKKEKRLPFHLNIDQVSALV 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD---DQSTLRIQGKGD 195
           +            +  R+ A+L  LY CG+R+SE   LT  N+ D    Q+  R+ GKG 
Sbjct: 120 E-----APAGAAGLPLRDRAVLETLYSCGIRVSE---LTGMNVGDLDLHQALARVMGKGG 171

Query: 196 KIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           K RIVP+    RKA+  Y     D  P D       PL    RG  L      R + +  
Sbjct: 172 KERIVPVGSFARKALSAYLEERGDPPPCD-------PLILNSRGGRLTRRSVARIVDRHM 224

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             +      + HTLRH+FATHLL  G DLR IQ +LGH  LSTTQ YT V+     D +M
Sbjct: 225 LMIAAMRKVSPHTLRHTFATHLLEGGADLRCIQELLGHASLSTTQKYTQVSI----DRLM 280

Query: 312 EIYDQTHP 319
           E+YDQ HP
Sbjct: 281 EVYDQAHP 288


>gi|149377067|ref|ZP_01894817.1| integrase/recombinase XerD [Marinobacter algicola DG893]
 gi|149358603|gb|EDM47075.1| integrase/recombinase XerD [Marinobacter algicola DG893]
          Length = 310

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/294 (32%), Positives = 152/294 (51%), Gaps = 14/294 (4%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +E GL + T Q+Y  D    L  LA + +E+     + ++  T++ ++IS+  +      
Sbjct: 28  LEDGLGEKTRQAYRSD----LERLAAWLQEQPGKPLLTEVRRTDLLSWISRGLSDGFKTS 83

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           +  R LSG++ F +YL +  +  E   L + + +    LP +L+E      V+N+L    
Sbjct: 84  TAARRLSGLRRFFRYLLREGVIAEDPTLRIDSPRLPRRLPDSLSEDD----VENLLSEPD 139

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
            E   I+ R+ A++ +LYGCGLR+SE ++LT   +   Q  +RI GKG+K R+VPL    
Sbjct: 140 PEVP-IELRDKAMMEILYGCGLRVSELVALTVDEVNLRQGVVRIVGKGNKERLVPLGEEA 198

Query: 207 RKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              ++ Y      +L        LF G R   +    F   I+      G+    + HTL
Sbjct: 199 VDWLVRYMREGRGELLKGRASNALFPGNRPTAMTRQTFWHRIKHYALRAGIHKHLSPHTL 258

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           RH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++   HP
Sbjct: 259 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARQR----LQSLHQAHHP 308


>gi|189346148|ref|YP_001942677.1| integrase family protein [Chlorobium limicola DSM 245]
 gi|189340295|gb|ACD89698.1| integrase family protein [Chlorobium limicola DSM 245]
          Length = 337

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 165/339 (48%), Gaps = 38/339 (11%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           +G   PEI         + +L  L+ ++ +S  TL +Y  D  QF IF+A      + I 
Sbjct: 14  DGRRYPEI---------ERFLDYLKSQKNVSSHTLTAYRNDLDQFSIFIA----SHLGIG 60

Query: 62  TIR-----QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
            +R     QL+  ++R ++       +  +S+ R L+ +KSF +YL+   I   S +  +
Sbjct: 61  DMRNFLPEQLAVVDVRLYMGYLLKNGLQPKSIARKLATLKSFYRYLQHIGIIRTSVLAYV 120

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA----------RNSAILYLLYGC 166
              K   ++P  L E+Q   L   VL  +S +     A          R+ A+L +LY C
Sbjct: 121 TTPKYPRTVPGFLTEQQTEKLFGEVLSGSSADASRSGAQDIQEQFELERDRALLEVLYSC 180

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL------CPFD 220
           GLRISE   L   N+  +   ++I GKG+K RIVPL     +A+ +Y+++          
Sbjct: 181 GLRISELTGLEMHNLSLENGYVKITGKGNKQRIVPLGSCAVEALKKYFEVRRNFFRIFLK 240

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
            +      +F   +GK + P + QR  R+    +        H LRHSFATHLL++G DL
Sbjct: 241 GDAGALAHVFVTKKGKKIYPMLVQRITRKYLTPVTEQKERNPHILRHSFATHLLNSGADL 300

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           +S+  +LGH  L+TT+IYT+V        + E+Y + HP
Sbjct: 301 KSVSEMLGHSSLTTTEIYTHVTFSR----LSEVYRKAHP 335


>gi|330997435|ref|ZP_08321286.1| tyrosine recombinase XerD [Paraprevotella xylaniphila YIT 11841]
 gi|329570809|gb|EGG52525.1| tyrosine recombinase XerD [Paraprevotella xylaniphila YIT 11841]
          Length = 317

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/287 (32%), Positives = 154/287 (53%), Gaps = 15/287 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + Q L++ERGLS+ TL +Y  D R+ L    F+++E++     R +S  ++  F+++ 
Sbjct: 21  RRYYQYLKLERGLSENTLDAYTEDLRKLL---DFFSDEELDF---RAVSLDDLHQFMAEL 74

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               I  RS+ R LSGI+SF ++L   K   +     + + K    LP  L   +   ++
Sbjct: 75  ADVGISPRSMARILSGIRSFYRFLYVEKEIEQDPTELLESPKIGRRLPEVLTVAEIDAMI 134

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           + + L           RN AIL +LY CGLR+SE   L   ++  ++  +R++GKG+K R
Sbjct: 135 EGIDLSQPE-----GQRNRAILEMLYSCGLRVSELCGLRISDLFLEEGFIRVKGKGEKER 189

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI---RGKPLNPGVFQRYIRQLRRYLG 255
           +VP+        LE + LC   + +      F  +   RG  L+      ++++L    G
Sbjct: 190 LVPISGRAVHE-LENWFLCRNLIRIKPGHEDFVFLSLRRGTALSRITIFYWVKELAVAAG 248

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +  + + HT RHSFATHLL  G +LR IQ++LGH  +STT+IYT+++
Sbjct: 249 IQKTISPHTFRHSFATHLLEGGANLRVIQAMLGHESISTTEIYTHID 295


>gi|284044544|ref|YP_003394884.1| tyrosine recombinase XerD [Conexibacter woesei DSM 14684]
 gi|283948765|gb|ADB51509.1| tyrosine recombinase XerD [Conexibacter woesei DSM 14684]
          Length = 320

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 157/306 (51%), Gaps = 21/306 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +++  LE+ERGLS+ TL++Y  D  Q+  +L    ++ + ++      + ++ AF+    
Sbjct: 21  DFIAYLELERGLSRNTLEAYRSDLLQYGAYLDRAGKDALRVE------HGDLAAFVGALA 74

Query: 80  TQKIG-----DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
               G       +++R ++ ++SF ++L++ +I        ++   +   LP+ L+  + 
Sbjct: 75  AGGDGRAPAAATTVQRKVACLRSFYRHLRREEILDRDPTAELKGPPRGKKLPKVLSRDEV 134

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
                  LL     T     R+ A+L L+Y CGLR SEA+ +    +  D   LR  GKG
Sbjct: 135 -----QHLLSQPRGTGPAALRDRALLELMYACGLRASEAVDMQLDELDVDDGILRANGKG 189

Query: 195 DKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VP+      A+  Y     P  + L  +  +F   RG  L      + +++  R 
Sbjct: 190 NKERLVPIGSKALDALRHYLTRGRPQMVGLREEKRVFVNQRGHGLTRQGLYKIVQRHART 249

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL    + HTLRH+FATHLL+ G DLRS+Q +LGH  ++TTQIYT+++++     + ++
Sbjct: 250 AGLGDKMSPHTLRHTFATHLLAGGCDLRSLQEMLGHADIATTQIYTHLSAER----LRDV 305

Query: 314 YDQTHP 319
           Y   HP
Sbjct: 306 YFDAHP 311


>gi|148264429|ref|YP_001231135.1| tyrosine recombinase XerD [Geobacter uraniireducens Rf4]
 gi|146397929|gb|ABQ26562.1| tyrosine recombinase XerD subunit [Geobacter uraniireducens Rf4]
          Length = 295

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/302 (32%), Positives = 159/302 (52%), Gaps = 19/302 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +E+GL+K TL++Y  D   +L FLA    ++   + +  L   E    +++ + 
Sbjct: 8   FLNYLLVEKGLTKNTLEAYSRDLSVYLDFLA--ERKRTNPENVTALDVVE---HVTRLKD 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS  R+LS I+ F ++L     +  +    +   K  N LP  L+ ++  +L   
Sbjct: 63  SGLAPRSRARALSAIRMFHRFLLVENYSVSNPTAIIETPKTVNRLPEVLSGREVESL--- 119

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L T+      + R+ A+L +LY  GLR+SE +SL  +++  D   L   GKG+K R+V
Sbjct: 120 --LATAKGDGTFEVRDRAMLEVLYATGLRVSELVSLKLRDVNIDAGYLLTMGKGEKERLV 177

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           P+  S R AI EY  L    + L+ +     LF    G  ++   F   I++     G+ 
Sbjct: 178 PMGESARTAIGEY--LAGIRILLDRKGDNEYLFLSRLGGKMSRQAFWNIIKKRSGAAGIR 235

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + + HTLRHSFATHLL NG DLRS+Q +LGH  LS+TQIYT+V  +     + +++ + 
Sbjct: 236 KNISPHTLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRER----LKKLHQEF 291

Query: 318 HP 319
           HP
Sbjct: 292 HP 293


>gi|109900015|ref|YP_663270.1| tyrosine recombinase XerD [Pseudoalteromonas atlantica T6c]
 gi|109702296|gb|ABG42216.1| tyrosine recombinase XerD [Pseudoalteromonas atlantica T6c]
          Length = 301

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/301 (31%), Positives = 153/301 (50%), Gaps = 13/301 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + +E+GLS+ TL +Y  D  +F  FL      + ++  +  +   +I  ++++R
Sbjct: 12  EQFLDTIWLEKGLSENTLDAYRSDLTKFSDFL----RAQSSVVNLLDIQTEDINQYMAER 67

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               + +RS  R LS ++ F  Y+    +  +  +  M+N K S  LP+ L+E+Q    V
Sbjct: 68  FDNGLSERSSARCLSSLRRFSGYMLAHGLREDDPVSRMQNPKLSKPLPKTLSEQQ----V 123

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D+ LL+       I  R+ A+L +LY  GLR++E ++L    +   Q  +R+ GKG+K R
Sbjct: 124 DD-LLNAPQTDDPIQLRDKAMLEVLYATGLRVTELVTLRVGQLSISQGVVRVTGKGNKER 182

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VPL       +  Y       L  N    LF   RG  +    F   I+       +  
Sbjct: 183 LVPLGEEALDWLTTYMKEARGALLRNESDVLFPSNRGTIMTRQTFWHRIKFHATQANITS 242

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V +      + E+    H
Sbjct: 243 DLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATAR----LQELVAAHH 298

Query: 319 P 319
           P
Sbjct: 299 P 299


>gi|78042632|ref|YP_360783.1| tyrosine recombinase XerD [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77994747|gb|ABB13646.1| tyrosine recombinase XerD [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 287

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/299 (32%), Positives = 161/299 (53%), Gaps = 18/299 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  L +E+G S  TL SY  D  +F+ FL     EK  I  I   S  +I+ ++     
Sbjct: 5   FIDYLLLEKGFSLNTLLSYRRDLEKFVSFL-----EKRNISIIDATS-KDIKLYLQDL-A 57

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +K+   S+ R+L+ I+SF KYL + KI  E+  L++   K    LP  L+ ++      +
Sbjct: 58  RKLKPASVARNLAAIRSFYKYLLREKIVGENPALDVDGPKLGLKLPEILSYEEI-----D 112

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +LL     + W   R+ A+L LLY  GLR+SE ++L   N+  D+  ++I GKG K+RIV
Sbjct: 113 LLLKAPDLSTWEGVRDRAMLELLYATGLRVSELVNLELPNLYLDERYVKILGKGAKMRIV 172

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P        + +Y  L     + +++L + R  +G       F + +++  +  G+  + 
Sbjct: 173 PFGEVAAHYLNQYLALRAKRKSNSLKLFITR--KGSGFTRQGFWKMLKRYGQKAGIVKNL 230

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           T H +RHSFATHLL NG DLR +Q +LGH  + TTQIYT++ ++     + E++ + HP
Sbjct: 231 TPHLIRHSFATHLLENGADLRIVQELLGHSFIETTQIYTHLTTRK----LREVFRKAHP 285


>gi|330962350|gb|EGH62610.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 290

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/303 (32%), Positives = 149/303 (49%), Gaps = 21/303 (6%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           +L  ER +S  TL++Y  D  + L F      +K  + +   L    +R+F +++  Q  
Sbjct: 2   HLRSERQVSPHTLEAYRRDLGKVLAFC-----QKAGLSSWTNLDIQHLRSFTARQHQQGQ 56

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
             RSL R LS ++ F KYL +  I        +   K    LP+ L+  +A  L+D  + 
Sbjct: 57  SSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRAAQLLDGAV- 115

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
               E  ++  R+ AIL LLY  GLR+SE   L    +      +++ GKG K R++P+ 
Sbjct: 116 ----EEDFLAQRDQAILELLYSSGLRLSELTGLNLDQLDLRAGLVQVLGKGSKTRVLPVG 171

Query: 204 PSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLSTT 261
              RKA+  +    P     N Q   +F    GK L P   Q  ++    R LG  L   
Sbjct: 172 SKARKALESW---LPLRALTNPQDDAVFVSQHGKRLGPRAVQNRVKAAGERELGQNLHP- 227

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            H LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +YD  HP  
Sbjct: 228 -HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAHPRA 282

Query: 322 TQK 324
            +K
Sbjct: 283 KRK 285


>gi|326773392|ref|ZP_08232675.1| tyrosine recombinase XerD [Actinomyces viscosus C505]
 gi|326636622|gb|EGE37525.1| tyrosine recombinase XerD [Actinomyces viscosus C505]
          Length = 311

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/315 (31%), Positives = 155/315 (49%), Gaps = 27/315 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L +L +ERGLS  TL +YE D  ++L +L         I   + +S  ++  F+   
Sbjct: 6   RGYLAHLRVERGLSPHTLSAYERDLGRYLRYL-----RSAGISAPQDVSRNDVAGFLEVL 60

Query: 79  RTQKIGDRSLK-----RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           RT   G R L      R+++ ++ + K+L     T+E     +R  +    LP+AL   +
Sbjct: 61  RTGSDGARPLASSSASRTVTAVRGWHKFLLAEGTTSEDPSATVRPPQPGRRLPKALGVDE 120

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++   +  S     +  R+ A+L +LY  G RISEA+ L   ++  D   LR+ GK
Sbjct: 121 VCRLLEAAGVDDSP----VSLRDRALLEVLYATGARISEAVGLVVDDLDTDSRLLRLFGK 176

Query: 194 GDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLR 251
           G K R+VP+     +A+  Y     P        +P +F    G+PL+       ++Q  
Sbjct: 177 GRKERVVPMGAYAWEALDAYLVRGRPVLAEKGRGVPQVFLNTLGRPLSRQSAWAVLQQAA 236

Query: 252 RYLGLPLSTTA-------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              GL  +  A       HTLRHSFATHLL+ G D+R +Q +LGH  ++TTQIYT V   
Sbjct: 237 ERAGLIGTDGADERRISPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTKVTV- 295

Query: 305 NGGDWMMEIYDQTHP 319
              D + E+Y  +HP
Sbjct: 296 ---DHLREVYATSHP 307


>gi|6648971|gb|AAF21314.1| site-specific recombinase [Staphylococcus aureus]
          Length = 293

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/303 (33%), Positives = 163/303 (53%), Gaps = 19/303 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTI-RQLSYTEIRAFIS 76
           + +L+ ++IE+GLS  T+ +Y  D +++  ++   TE  I+ I  I RQL    +   I 
Sbjct: 6   EEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYM---TEHHISHIDFIDRQLIQECLGHLID 62

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           + ++ K    S+ R +S I+SF ++  + K   +   + + + K    LP  LN  + L 
Sbjct: 63  QGQSAK----SIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLA 118

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L     L T    K    R+  +L LLY  G+R+SE + L  +N+      +R+ GKGDK
Sbjct: 119 L-----LETPDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDK 173

Query: 197 IRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            RIVPL  +V + +  Y + + P  L   +   LF  + GKPL+     + I+Q      
Sbjct: 174 ERIVPLGDAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKAN 233

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y+
Sbjct: 234 IKKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYN 289

Query: 316 QTH 318
           Q H
Sbjct: 290 QFH 292


>gi|325971096|ref|YP_004247287.1| tyrosine recombinase xerC [Spirochaeta sp. Buddy]
 gi|324026334|gb|ADY13093.1| Tyrosine recombinase xerC [Spirochaeta sp. Buddy]
          Length = 300

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 103/315 (32%), Positives = 168/315 (53%), Gaps = 32/315 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQTIRQLSYTEIRAFISK 77
           +++   L ++R LS+ T   Y     +  +FLA  ++ E IT   I   +Y  I+     
Sbjct: 12  EDYTDYLAMQRRLSEATQSVY---AHELALFLAAGSDYETITASLIE--AYIVIQV---- 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            +T+ + +RS+ + LS ++SF  +L+  KI  ++ +L ++  ++  SLP+  +  Q    
Sbjct: 63  -QTRHLSERSVAKLLSALRSFFSFLQMSKIREDNPVLLIQRGRQKQSLPQVASVAQV--- 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-LRIQGKGDK 196
             + LL +   +  +  R+  +  L+Y CGLRISEA +L    + D Q T +R+ GK  K
Sbjct: 119 --DALLESIDTSDLLGFRDRTLFELIYSCGLRISEACTL---QVSDYQKTSIRVVGKRHK 173

Query: 197 IRIVPLLPSVRKAILEYY-DLCPFDLNLNIQL-PLFRGIRGKPLN-PGVFQRYIRQLRRY 253
           IRI+P+    R  +  Y  D+ P  + + +    LF G RG  L    +++R+I     Y
Sbjct: 174 IRIIPVGEIARMWVDAYLKDIRPKLIGMRLSTKALFVGRRGHQLTRQAMYKRFIA----Y 229

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             +  L    HTLRHSFATHLL  G DLRS+Q +LGH  + TTQIYT+V++K     + +
Sbjct: 230 CDVAGLDAKVHTLRHSFATHLLEGGADLRSVQELLGHSDIKTTQIYTHVDTKQ----LQK 285

Query: 313 IYDQTHPSITQKDKK 327
            Y+Q H  I  K+ +
Sbjct: 286 AYEQFHAGIHDKEDQ 300


>gi|229916183|ref|YP_002884829.1| tyrosine recombinase XerD [Exiguobacterium sp. AT1b]
 gi|229467612|gb|ACQ69384.1| tyrosine recombinase XerD [Exiguobacterium sp. AT1b]
          Length = 295

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 155/301 (51%), Gaps = 14/301 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++LQ + +E+ +S  T Q+Y  D  Q+   L      ++ ++   +++ + I   I + 
Sbjct: 7   ESFLQYMTVEKRMSANTRQAYASDLTQYASTLT-----QLGVEEWNEVTRSHIVKHIEEL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   SL+R++S I+ F  +LK   +TT    L + + K    LP   ++ +   L+
Sbjct: 62  SQAGRASSSLRRAVSSIRMFHHHLKMTGVTTTDPSLYLESPKAEKQLPDTWSQTEVERLL 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D+V       +  +  R+ A+L LLYG G+R+SE L L   ++  +   L+ +GKG++ R
Sbjct: 122 DSVPT-----SDPLSLRDRAMLELLYGTGMRVSELLGLDLDDLQFELGYLQCEGKGERAR 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           I+P+    +  +  Y       L       LF   RG  L+   F + I++  +  G+  
Sbjct: 177 IIPVSSVAQSFVERYIQQARNGLGGRETEALFLNGRGGRLSRQGFWKMIKRRAKLAGIEK 236

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             T H LRHSFATHLL NG DLR+IQ +LGH  L+TTQ+YT+VN       + ++Y + H
Sbjct: 237 EITPHVLRHSFATHLLENGADLRAIQQMLGHADLATTQVYTHVNKSR----LHDVYRKHH 292

Query: 319 P 319
           P
Sbjct: 293 P 293


>gi|70728483|ref|YP_258232.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens
           Pf-5]
 gi|68342782|gb|AAY90388.1| tyrosine recombinase XerD [Pseudomonas fluorescens Pf-5]
          Length = 298

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 156/308 (50%), Gaps = 32/308 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI-QTIRQLSYTEIRAFISKRR 79
           +L  L +E+GLS  T  +Y  D     +F  +  E+ + + +  R+L    I   ++ R 
Sbjct: 12  FLDALWLEKGLSDNTRDAYRSD---LALFNGWLQEQGLELPRAGREL----ILDHLAWRV 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q    RS  R LSG++ F +YL + K+      L +   +    LP++L+E        
Sbjct: 65  EQAYKPRSTARFLSGVRGFYRYLLREKLIEIDPTLQIDMPQLGRPLPKSLSEADV----- 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL     ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K R+
Sbjct: 120 EALLAAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179

Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           VP+           +R A  E     P D+       LF  +RG+ +    F   I+   
Sbjct: 180 VPMGEEAIVWVERYMRDARAELLGGRPSDV-------LFPSLRGEQMTRQTFWHRIKHQA 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +  G+  + + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + 
Sbjct: 233 KVAGIGKALSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288

Query: 312 EIYDQTHP 319
           +++ + HP
Sbjct: 289 DLHAKHHP 296


>gi|226328247|ref|ZP_03803765.1| hypothetical protein PROPEN_02140 [Proteus penneri ATCC 35198]
 gi|225202980|gb|EEG85334.1| hypothetical protein PROPEN_02140 [Proteus penneri ATCC 35198]
          Length = 312

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 161/303 (53%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L N+ +E+GLS  TL SY  D +    +LA +  + +++ T+      ++++F++ R
Sbjct: 23  EQFLDNIWLEQGLSANTLSSYRLDLQALGQWLAHHQLDWLSVSTL------DLQSFLATR 76

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S  R LS ++   +YL + K+  +     +   K    LP+ L+E+Q    V
Sbjct: 77  LDEGYKASSAARLLSTMRRLFQYLYREKLRLDDPSALLSTPKLPKRLPKDLSEQQ----V 132

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D+ LL+     + ++ R+ A+L +LY CGLR+SE + L+  +I   Q  LR+ GKGDK R
Sbjct: 133 DD-LLNAPCIDEPLELRDKAMLEVLYACGLRVSELVGLSLSDISLRQGVLRVIGKGDKER 191

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       + +Y     P  +       +F  +RG+ +    F   I+      G+ 
Sbjct: 192 LVPLGEEAIYWLEQYLQYGRPTLMQGKTDDIVFPSLRGQKMTRQTFWHRIKHYAVIAGID 251

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  ++ Q
Sbjct: 252 TEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKVLHQQ 307

Query: 317 THP 319
            HP
Sbjct: 308 HHP 310


>gi|295706488|ref|YP_003599563.1| tyrosine recombinase XerD [Bacillus megaterium DSM 319]
 gi|294804147|gb|ADF41213.1| tyrosine recombinase XerD [Bacillus megaterium DSM 319]
          Length = 297

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 158/306 (51%), Gaps = 21/306 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q+++  L +ERGL+K T+ SYE D + +    A Y E    +++  +++   I  F+   
Sbjct: 6   QDFIHYLVVERGLAKNTIDSYERDLKNY----AQYLEHVEQLKSFNEVTRLHIVNFLKYL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q+   +++ R ++  +SF ++L + K       +++   +    LP+ LN ++     
Sbjct: 62  SDQQKSSKTIARHVASTRSFHQFLLREKAADTDPSVHIDTPQLERKLPKVLNAEEV---- 117

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL---RIQGKGD 195
              LL+    +     R+ A+L LLY  G+R+SE ++L   NI D   T+   R  GKG+
Sbjct: 118 -EALLNVFDTSTPFGIRDKAMLELLYATGIRVSELVNL---NIDDAHLTMGFIRCIGKGN 173

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K RIVP+     +AI +Y       L    +    LF    G+ L    F + +++L   
Sbjct: 174 KERIVPIGRLATEAIEDYLQHSRSVLTKQKEQDKALFVNHHGRRLTRQGFWKILKKLASE 233

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        + ++
Sbjct: 234 AKIEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKAR----LKDV 289

Query: 314 YDQTHP 319
           Y+Q HP
Sbjct: 290 YNQFHP 295


>gi|259046718|ref|ZP_05737119.1| integrase/recombinase XerC [Granulicatella adiacens ATCC 49175]
 gi|259036614|gb|EEW37869.1| integrase/recombinase XerC [Granulicatella adiacens ATCC 49175]
          Length = 318

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/289 (32%), Positives = 150/289 (51%), Gaps = 15/289 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E Q++L  +++ER  S  T+ +YE D + F  +L      ++ I +   +S  ++R ++ 
Sbjct: 5   EMQDFLAYIKVERRYSPETIHAYERDIQHFCDYLT-----EVPITSWNDVSVVDVRIYLG 59

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-PRALNEKQAL 135
               +     S+ R LS ++SF  +L +RK   ESN     + KK   L P    E +  
Sbjct: 60  VLHRENYNRSSISRFLSSLRSFYHFLVERK-AVESNPFASVSYKKGKMLLPEFFYEDEIE 118

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
             ++++  + S     +D RN A++ +LY  G+R+SE  +LT + +  D S + + GKG 
Sbjct: 119 KFINSIDGNQS-----LDQRNKALVEVLYATGMRVSELTNLTLEQLDLDNSIILVIGKGS 173

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K R VP+    R A+  Y +    DL          +F    G PL     +  + +L +
Sbjct: 174 KERYVPIGDFARTALETYLEEGRKDLMAKERKEHFFVFVNHLGDPLTTNGVRYILEKLIQ 233

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             GL L    H LRH+FATHLL+NG D+R++Q +LGH  LS+TQIYT+V
Sbjct: 234 ESGLTLKIHPHMLRHTFATHLLNNGADMRTVQELLGHVSLSSTQIYTHV 282


>gi|313500307|gb|ADR61673.1| XerD [Pseudomonas putida BIRD-1]
          Length = 298

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 149/309 (48%), Gaps = 32/309 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKR 78
            +L  L +E+GLS  T  SY  D     +F  +  E  +++    R L    I   ++ R
Sbjct: 11  QFLDALWLEKGLSDNTRVSYRSD---LALFNGWLQEHSVSLPDAGRDL----ILDHLAWR 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q    RS  R LSG++ F +YL + K+      L +   +    LP++L+E       
Sbjct: 64  LDQGYKPRSTARFLSGLRGFFRYLLREKLVAIDPTLQVDMPQLGKPLPKSLSEADV---- 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL      + I  R+ A+L +LY CGLR++E +SLT   +   Q  LR+ GKG K R
Sbjct: 120 -EALLQAPDLGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKER 178

Query: 199 IVPLLPSV--------RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +VP+            R    E  +  P D+       LF   RG+ +    F   I+  
Sbjct: 179 LVPMGEEAVVWLDRYQRDGRAELLNGRPSDV-------LFPSQRGEQMTRQTFWHRIKHH 231

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            R  G+    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        +
Sbjct: 232 ARVAGIDKPLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR----L 287

Query: 311 MEIYDQTHP 319
            +++ Q HP
Sbjct: 288 QQLHAQHHP 296


>gi|227536514|ref|ZP_03966563.1| integrase/recombinase XerD [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227243591|gb|EEI93606.1| integrase/recombinase XerD [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 297

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 168/310 (54%), Gaps = 29/310 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++++ + L++ERGL+  ++++Y  D  +  ++    T++++T+   +QLS   I+ F+  
Sbjct: 7   KKDFKRYLQLERGLTSNSIEAYLNDIAKLEVYC---TDQQLTL---KQLSVHNIQEFLVW 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             T  I   S  R +SG+K+F  YL+   + T++ +  +++ + S  +P  LN ++   L
Sbjct: 61  INTFDISPYSQSRLISGLKAFFGYLQLEGLITKNPVELIQSPRLSRKIPVVLNIEEIDQL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +  + L T+        RN AIL +LYGCGLR+SE ++L   N+      ++++GKG+K 
Sbjct: 121 IGALDLSTAD-----GMRNKAILEILYGCGLRVSELVNLRISNLFLHIDFIKVEGKGNKE 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--------RGKPLNPGVFQRYIRQ 249
           R++P+     K +  Y +       + +  P+  G         RG  L+  +    I+ 
Sbjct: 176 RLIPIGQHAIKYLNIYLN------EIRVHQPVKAGFEDYVFLNKRGTSLSRVMIFLIIKD 229

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           L    GL    + HT RHSFA+HL+  G DLR++Q +LGH  ++TT+IYT+++     D+
Sbjct: 230 LAAKTGLQKEISPHTFRHSFASHLVEGGADLRAVQDMLGHESITTTEIYTHIDR----DY 285

Query: 310 MMEIYDQTHP 319
           +  I  Q HP
Sbjct: 286 LHAIITQFHP 295


>gi|319646005|ref|ZP_08000235.1| tyrosine recombinase xerC [Bacillus sp. BT1B_CT2]
 gi|317391755|gb|EFV72552.1| tyrosine recombinase xerC [Bacillus sp. BT1B_CT2]
          Length = 305

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 154/311 (49%), Gaps = 35/311 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +++ L+IE+  SK T+  Y      F  FL         I+    ++Y ++R F+++   
Sbjct: 12  FIEYLQIEKNYSKYTIVGYISSIEDFERFLHVQG-----IKGFEDVTYPDVRIFLTEAHE 66

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  R++ + +S ++SF K+L + K+  E+  L +   K+   +P+ L EK+   L + 
Sbjct: 67  KGLTRRTISKKISALRSFYKFLLREKLVKENPFLLVSLPKQDKRIPKFLYEKELEELFEV 126

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L T      +  RN A+L  LY  G+R+SE  SL   ++     T+ + GKG K R +
Sbjct: 127 SDLSTP-----LGQRNQALLEFLYATGMRVSELCSLKESDLDLFLDTVLVHGKGRKQRYI 181

Query: 201 PLLPSVRKAI------------LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           P     R+A+            L+  + CPF         +F   RG PL P   +  + 
Sbjct: 182 PFGSFAREALDLYLQNGRRILLLKAKEPCPF---------IFLNQRGGPLTPRGVRYILG 232

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L +     L    H LRH+FATHLL+ G DLRS+Q +LGH  LS+TQ+YT+V+     D
Sbjct: 233 ELVKKTSGTLHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVSK----D 288

Query: 309 WMMEIYDQTHP 319
            + + Y   HP
Sbjct: 289 MLRKTYMSHHP 299


>gi|307728182|ref|YP_003905406.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1003]
 gi|307582717|gb|ADN56115.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1003]
          Length = 307

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 159/318 (50%), Gaps = 33/318 (10%)

Query: 21  WLQNLEIERGLSKLTLQSY--ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +L NLE ER LS  TL+ Y  E D  + L             + ++ L+  +IR  +++ 
Sbjct: 10  YLSNLEHERRLSAHTLRGYTHELDELRLLA----------KGRPLQSLTAVDIRGAVARA 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +  RS+   LS  ++F ++L  R     + +  +R  K+  +LP+AL+   A    
Sbjct: 60  HAGGLTARSISHRLSAWRAFYRWLAGRIDLPANPVATVRAPKQPKTLPKALSVDDA---- 115

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL-----------TPQNIMDDQST 187
            N L+ T         R+ A+L L Y  GLR++E + L           +   +  D + 
Sbjct: 116 -NRLMETPPAASAEGLRDHAMLELFYSSGLRLAELVGLDVRFADADGYRSAGWLKLDSAE 174

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           + + GKG++ RIVP+     +A+  +  +    + L+   PLF   RG  L+P V +  +
Sbjct: 175 VEVLGKGNRRRIVPVGSKALEALNAWLAVRDQMVRLDPH-PLFLSARGNRLSPNVVRERV 233

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  ++ TQ+YT ++ ++  
Sbjct: 234 KRAALVAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTGLDFQH-- 291

Query: 308 DWMMEIYDQTHPSITQKD 325
             +  +YDQ HP   ++D
Sbjct: 292 --LARVYDQAHPRAKKRD 307


>gi|26988201|ref|NP_743626.1| site-specific tyrosine recombinase XerD [Pseudomonas putida KT2440]
 gi|148549459|ref|YP_001269561.1| site-specific tyrosine recombinase XerD [Pseudomonas putida F1]
 gi|34222835|sp|Q88MV0|XERD_PSEPK RecName: Full=Tyrosine recombinase xerD
 gi|24982938|gb|AAN67090.1|AE016337_13 integrase/recombinase XerD [Pseudomonas putida KT2440]
 gi|148513517|gb|ABQ80377.1| tyrosine recombinase XerD subunit [Pseudomonas putida F1]
          Length = 298

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 149/309 (48%), Gaps = 32/309 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKR 78
            +L  L +E+GLS  T  SY  D     +F  +  E  +++    R L    I   ++ R
Sbjct: 11  QFLDALWLEKGLSDNTRVSYRSD---LALFNGWLQEHSVSLPDAGRDL----ILDHLAWR 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q    RS  R LSG++ F +YL + K+      L +   +    LP++L+E       
Sbjct: 64  LDQGYKPRSTARFLSGLRGFFRYLLREKLVAIDPTLQVDMPQLGKPLPKSLSEADV---- 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL      + I  R+ A+L +LY CGLR++E +SLT   +   Q  LR+ GKG K R
Sbjct: 120 -EALLQAPDLGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKER 178

Query: 199 IVPLLPSV--------RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +VP+            R    E  +  P D+       LF   RG+ +    F   I+  
Sbjct: 179 LVPMGEEAVVWLERYQRDGRAELLNGRPSDV-------LFPSQRGEQMTRQTFWHRIKHH 231

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            R  G+    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        +
Sbjct: 232 ARVAGIDKPLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR----L 287

Query: 311 MEIYDQTHP 319
            +++ Q HP
Sbjct: 288 QQLHAQHHP 296


>gi|260583968|ref|ZP_05851716.1| tyrosine recombinase XerD [Granulicatella elegans ATCC 700633]
 gi|260158594|gb|EEW93662.1| tyrosine recombinase XerD [Granulicatella elegans ATCC 700633]
          Length = 297

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/295 (31%), Positives = 156/295 (52%), Gaps = 20/295 (6%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +GLS+ T+ SY+ D  +F  FL     ++  I+  +++ Y+ I  F+   +       S 
Sbjct: 15  QGLSQNTVMSYQRDLMKFYQFL-----KEQQIRDWKEVDYSLIVLFLQDLKQDGYATSST 69

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--LLHTS 146
            R +S +K F K+L++ ++   + +  ++  KKS  LP+AL        VD V  +L++ 
Sbjct: 70  SRMISCLKKFFKFLQQEQLVETNPVQPLKVPKKSKMLPKALT-------VDEVTQVLNSC 122

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
             +  +  R+ A+L LLY  G+R+SE ++L   ++  +   L+  GKG+K RI+P+  + 
Sbjct: 123 DTSTVLGLRDKAMLELLYATGMRVSELITLKLSDLHLELGFLQTIGKGNKQRIIPIGQAA 182

Query: 207 RKAILEY--YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
              +  Y  Y     +   N    LF   RG       F + ++++ +  G+    + HT
Sbjct: 183 TNWVQHYLTYARVVLEQESNPVEYLFLNHRGNGFTRQGFWKNLKKIVQEAGVHKDVSPHT 242

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           LRHSFATH+L  G DLR +Q +LGH  +STTQIYT++ ++     M EIY Q HP
Sbjct: 243 LRHSFATHILEAGADLRIVQELLGHSDISTTQIYTHLTNER----MKEIYQQAHP 293


>gi|303236823|ref|ZP_07323402.1| tyrosine recombinase XerD [Prevotella disiens FB035-09AN]
 gi|302482991|gb|EFL46007.1| tyrosine recombinase XerD [Prevotella disiens FB035-09AN]
          Length = 318

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/280 (32%), Positives = 145/280 (51%), Gaps = 12/280 (4%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L++E+  S  TL +Y  D  + L +LA    EKI  +  +      I  F +      IG
Sbjct: 29  LKLEKAYSANTLDAYMRDVEKLLKYLA---NEKINPEEAK---LENIENFAAAVGDLGIG 82

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            RSL R LSG++ F +YL             + + K+   LP  L+ ++  +L + + L 
Sbjct: 83  ARSLARILSGVRQFFRYLVLEGYIEADPTELLESPKQPQHLPEVLSTEEVDSLENAIDL- 141

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
               +KW   RN AI+ +L+ CGLR+SE  +L   N+  D+  +R+ GKG K R+VP+ P
Sbjct: 142 ----SKWEGHRNKAIIEVLFSCGLRVSELTNLKLSNLYADEQFVRVMGKGSKERLVPISP 197

Query: 205 SVRKAI-LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              K +   + D     +    +  +F   RG  L   +    I++  +  G+  + + H
Sbjct: 198 RALKELNFWFIDRNQMKIKEGEEDFVFLNRRGAHLTRTMILIMIKKYAQEAGIKKTISPH 257

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           TLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++
Sbjct: 258 TLRHSFATALLEGGADLRAIQAMLGHESIGTTEIYTHIDT 297


>gi|52080216|ref|YP_079007.1| site-specific tyrosine recombinase XerC [Bacillus licheniformis
           ATCC 14580]
 gi|52785593|ref|YP_091422.1| site-specific tyrosine recombinase XerC [Bacillus licheniformis
           ATCC 14580]
 gi|81385577|sp|Q65JN5|XERC_BACLD RecName: Full=Tyrosine recombinase xerC
 gi|52003427|gb|AAU23369.1| site-specific integrase/recombinase [Bacillus licheniformis ATCC
           14580]
 gi|52348095|gb|AAU40729.1| CodV [Bacillus licheniformis ATCC 14580]
          Length = 304

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 154/311 (49%), Gaps = 35/311 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +++ L+IE+  SK T+  Y      F  FL         I+    ++Y ++R F+++   
Sbjct: 11  FIEYLQIEKNYSKYTIVGYISSIEDFERFLHVQG-----IKGFEDVTYPDVRIFLTEAHE 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  R++ + +S ++SF K+L + K+  E+  L +   K+   +P+ L EK+   L + 
Sbjct: 66  KGLTRRTISKKISALRSFYKFLLREKLVKENPFLLVSLPKQDKRIPKFLYEKELEELFEV 125

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L T      +  RN A+L  LY  G+R+SE  SL   ++     T+ + GKG K R +
Sbjct: 126 SDLSTP-----LGQRNQALLEFLYATGMRVSELCSLKESDLDLFLDTVLVHGKGRKQRYI 180

Query: 201 PLLPSVRKAI------------LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           P     R+A+            L+  + CPF         +F   RG PL P   +  + 
Sbjct: 181 PFGSFAREALDLYLQNGRRILLLKAKEPCPF---------IFLNQRGGPLTPRGVRYILG 231

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L +     L    H LRH+FATHLL+ G DLRS+Q +LGH  LS+TQ+YT+V+     D
Sbjct: 232 ELVKKTSGTLHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVSK----D 287

Query: 309 WMMEIYDQTHP 319
            + + Y   HP
Sbjct: 288 MLRKTYMSHHP 298


>gi|117928448|ref|YP_872999.1| tyrosine recombinase XerD [Acidothermus cellulolyticus 11B]
 gi|117648911|gb|ABK53013.1| tyrosine recombinase XerD [Acidothermus cellulolyticus 11B]
          Length = 311

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/311 (31%), Positives = 153/311 (49%), Gaps = 24/311 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L ++ +E+GL+K T+  Y  D R++  FL    E++ T    R ++   I AF++  
Sbjct: 11  EAYLAHVAVEKGLAKNTVAGYRRDLRRYQEFL----EQRGTTDP-RAVTEEHITAFLAAL 65

Query: 79  RTQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           RT       +   S  R++  ++   ++     IT +    ++R       LP+A+   +
Sbjct: 66  RTGDADHPPLAVSSSARAVVAVRGLHRFAAMDGITADDPSRDVRPPTPGRRLPKAITVAE 125

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+  V  H   E      R+ A+L +LYG G RISEA+ L   ++  D   +R++GK
Sbjct: 126 VERLLAAVDGHAPREL-----RDRALLEVLYGTGARISEAVGLAIDDLDLDAGLVRLRGK 180

Query: 194 GDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           G K R+VPL    R A+ EY       L     + + +  +F   RG  L+       +R
Sbjct: 181 GSKQRVVPLGGYARSALREYLTAGRPALLAAARSGSARGAVFLNARGGRLSRQSAWTVLR 240

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GL    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V      D
Sbjct: 241 RAALRAGLATVISPHTLRHSFATHLLEGGADIRVVQELLGHASVTTTQIYTLVTV----D 296

Query: 309 WMMEIYDQTHP 319
            + E+Y   HP
Sbjct: 297 TLREVYAMAHP 307


>gi|308177312|ref|YP_003916718.1| tyrosine recombinase subunit XerC [Arthrobacter arilaitensis Re117]
 gi|307744775|emb|CBT75747.1| tyrosine recombinase subunit XerC [Arthrobacter arilaitensis Re117]
          Length = 334

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/319 (31%), Positives = 154/319 (48%), Gaps = 30/319 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L+ L+ ERG S+ TL++Y+ D R    FL     E      ++Q+S   +R +++   
Sbjct: 25  DYLEYLQRERGRSENTLRAYDVDLRNLGQFL----NEHAGDPALKQISVQMLRDWLAYLH 80

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP---------RALN 130
             ++   +L R +S +K+F  +  K  +      L +   KK   LP         R L+
Sbjct: 81  ESEVSRTTLARRISAVKNFFAWALKNHLVENDPALRLAAPKKERRLPHILQPSQIDRLLS 140

Query: 131 EKQALTLVDNVLLHTSHET------KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           E   LT  +         T      + I  R+  I  LLY  GLRISE ++L   +I  +
Sbjct: 141 EHAGLTEENEAARQKGDGTDQDPKARAIQCRDRVIAELLYASGLRISELVALDISDIDFE 200

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILE----YYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           + TLR+ GKG+K R+VP      + I+E    Y  +   +     +  L  G+RG  LN 
Sbjct: 201 RRTLRVLGKGNKERMVPFGKPAERVIIEWIRSYRRVVAAE---QAEDALLVGVRGSRLNV 257

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              +  I    R LG   ++  H LRH+ ATHLL  G DLR++Q  LGH  L+TTQ+YT+
Sbjct: 258 RQAREVIASALRSLGDTSASGPHALRHTVATHLLDGGADLRAVQEFLGHASLATTQLYTH 317

Query: 301 VNSKNGGDWMMEIYDQTHP 319
           V+     D + + Y Q HP
Sbjct: 318 VSV----DRLRQSYRQAHP 332


>gi|282889659|ref|ZP_06298199.1| hypothetical protein pah_c003o054 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500486|gb|EFB42765.1| hypothetical protein pah_c003o054 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 304

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/309 (31%), Positives = 162/309 (52%), Gaps = 22/309 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE--- 70
             +E +++L  +  E+GLS  T+++Y  D + F    A Y  +    Q +R+    E   
Sbjct: 12  FFREIKDFLVFIRSEKGLSSNTIEAYMRDVQNF----ANYAWQ----QEVRRYQAVEPEH 63

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           + AF+   ++      ++ R+L  +K F  +LK+     ++  + + + K    LP  L+
Sbjct: 64  LIAFLGSLKSADYATSTISRTLVSLKVFFGFLKREGTIEQNPSMLLESPKLWQLLPDILD 123

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            ++      ++L++          R+ AI  LLYG GLR+SE  +LT  +I DDQ  +R+
Sbjct: 124 IEEV-----DLLMNQPDNKTAKGVRDRAIFELLYGSGLRVSEVCTLTIYSI-DDQ-YIRV 176

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG K RIVP+      A+ +Y  L  +  +   +  LF  +RGK ++     R I++ 
Sbjct: 177 YGKGSKERIVPIGSQALMAVDQYLSLYRWQWDSEKEQSLFVTLRGKSMDRISIWRSIKEY 236

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  G+  + + HTLRHSFATHLL+NG DLR IQ +LGH  +S+T  YT V+S +    +
Sbjct: 237 AQQAGITKTISPHTLRHSFATHLLNNGADLRVIQDLLGHANISSTDRYTRVSSAH----L 292

Query: 311 MEIYDQTHP 319
            E + + HP
Sbjct: 293 QEAFHRFHP 301


>gi|171464293|ref|YP_001798406.1| integrase family protein [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171193831|gb|ACB44792.1| integrase family protein [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 333

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 161/324 (49%), Gaps = 33/324 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L  L + R LS  TL++Y  D      F    T E + +      S   +R +  + 
Sbjct: 13  QEYLHELHVLRQLSPHTLKAYGMDLSDLQNFALEDTVELLKV------SNGHVRRWAGRL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKR---------KITTE---SNILNMRNLKKSNSLP 126
            ++    RS+ R+LS  + +  +L ++         K+T+    + + +++  K+  SLP
Sbjct: 67  HSKGKSPRSIARTLSAWRGWYDWLSEKDARRDVHAGKVTSALVANPVDDVKAPKRPKSLP 126

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--- 183
           +AL+ +QAL LV+  +     +      R++AI+ LLY  GLR+SE L +      D   
Sbjct: 127 KALSVEQALALVNQAVKEAEEKKDLESIRDAAIIGLLYSSGLRLSELLGIDVIQSKDRQH 186

Query: 184 --------DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
                   D + + + GKG K R VP+     K++  + +L          + LF    G
Sbjct: 187 ESAGWLDWDAAEVTVLGKGGKRRSVPVGVPAMKSLAAWRELRDDGSYAEESIALFLSATG 246

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           K L+P   Q  +R L    GLP     H +RHSFA+H+L +  DLR++Q +LGH  +++T
Sbjct: 247 KRLSPRTVQARLRTLAMRAGLPTHVHPHMMRHSFASHVLQSSQDLRAVQEMLGHASIAST 306

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHP 319
           QIYT+++S++    + + YD+THP
Sbjct: 307 QIYTSLDSQH----LAQAYDKTHP 326


>gi|119357566|ref|YP_912210.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides DSM 266]
 gi|119354915|gb|ABL65786.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides DSM 266]
          Length = 304

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 158/302 (52%), Gaps = 13/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N+L +L IER  S+ T  SY  D  ++L+ +      + T++ I  ++ ++IR FIS+ 
Sbjct: 13  ENFLNHLLIERNFSQNTRVSYRNDLHRYLLTV------QETMKPITSVTASDIRQFISEL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +   ++ R++S I+S  ++L    +   +   N+   K++ +LP  L  ++ L L+
Sbjct: 67  HETGLEPATIARNISAIRSLFRFLVIEHLLEANPAENIHQPKQAKNLPSVLTIEETLRLL 126

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +  +L   H       R+ AIL  LY  G+R+SE   L  Q++  +   +RI GKG K R
Sbjct: 127 EAPIL--QHPPGKYLLRDKAILEFLYATGVRVSELTELQQQSLFLEAGFVRILGKGSKER 184

Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+  S   +I  Y       L N N Q  +F   RGK L+       +++     G+ 
Sbjct: 185 LVPIGLSAINSINRYRTELRIGLINRNSQDYVFLNARGKKLSRMAIYSMVQEYASLSGIE 244

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + HTLRH+FATHLL  G DLR++Q +LGH  +  TQ+YT+++      ++ E++   
Sbjct: 245 KKISPHTLRHTFATHLLEGGADLRAVQEMLGHSSILATQLYTHIDR----SFIKEVHKTF 300

Query: 318 HP 319
           HP
Sbjct: 301 HP 302


>gi|289667446|ref|ZP_06488521.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 305

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 152/310 (49%), Gaps = 19/310 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-----RQLSYTEIRAF 74
            +L  L++ER +S  TL +Y  D    + + A +  E    QT       QL    +R F
Sbjct: 6   EFLSYLQVERQVSAHTLDAYRRDLAALVAWTAEHNTEDGAQQTATPLDTAQLDSAHLRQF 65

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++    + +  +SL+R LS  +S+  +L K      S    MR  K    LP+ L+  +A
Sbjct: 66  VAAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIASSPAAAMRAPKSPRKLPQVLDADEA 125

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           + LV+            +  R+ A+L L Y  GLR+SE  +L  +++  D   + + GKG
Sbjct: 126 VRLVEVP------TDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVMVLGKG 179

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K R+VP+      A+ E+      D   +    +F G  G  ++    Q  I+QL    
Sbjct: 180 SKQRLVPVGSHAIAALREWLR----DSGASADTHVFPGRAGGAISQRAVQIRIKQLALRQ 235

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+      H LRHSFA+H+L + GDLR +Q +LGH  ++TTQIYT+++ ++    + ++Y
Sbjct: 236 GMFKDVHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQH----LAKVY 291

Query: 315 DQTHPSITQK 324
           D  HP   +K
Sbjct: 292 DAAHPRAKRK 301


>gi|311030138|ref|ZP_07708228.1| site-specific tyrosine recombinase XerC [Bacillus sp. m3-13]
          Length = 302

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 160/305 (52%), Gaps = 19/305 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L+ L+IE+  SK T+  Y+ D   F  F+    EE I+  +I ++++TE R ++++  
Sbjct: 10  SFLEYLQIEKNYSKYTIVFYQKDIEDFFDFMK---EEAIS--SINEVTHTEARMYLTRLH 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +K   +S+ R  S ++SF K+L + +   ++   ++   K+   LP+ L  ++    +D
Sbjct: 65  QKKYARKSVARKTSSLRSFYKFLLREEKVEQNPFTSVSLPKQEKRLPQFLYSEE----LD 120

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            +   +  ET  +  RN AIL LLY  G+RISE   +   +I     T+ + GKG+K R 
Sbjct: 121 KLFAVSDLETP-LGQRNQAILELLYATGIRISECCHIQIHDIDFQVGTILVTGKGNKQRY 179

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +P     + AI  Y +     L    + P     LF   RG  L P   +  +  + +  
Sbjct: 180 IPFGSFAQDAIKIYLEDGRKSLLEKQKTPNSTKHLFLNFRGGALTPRGVRLILNDMVQQA 239

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
              L  + H LRH+FATH+L+ G DLR +Q +LGH  LS+TQIYT+V  ++    + + Y
Sbjct: 240 CSTLHISPHMLRHTFATHMLNEGADLRVVQELLGHASLSSTQIYTHVTKEH----LQKTY 295

Query: 315 DQTHP 319
           +Q HP
Sbjct: 296 NQFHP 300


>gi|289664010|ref|ZP_06485591.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 305

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 152/310 (49%), Gaps = 19/310 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-----RQLSYTEIRAF 74
            +L  L++ER +S  TL +Y  D    + + A +  E    QT       QL    +R F
Sbjct: 6   EFLSYLQVERQVSAHTLDAYRRDLAALVAWTAEHNTEDGAQQTATPLDTAQLDSAHLRQF 65

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++    + +  +SL+R LS  +S+  +L K      S    MR  K    LP+ L+  +A
Sbjct: 66  VAAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIASSPAAAMRAPKSPRKLPQVLDADEA 125

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           + LV+            +  R+ A+L L Y  GLR+SE  +L  +++  D   + + GKG
Sbjct: 126 VRLVEVP------TDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVMVLGKG 179

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K R+VP+      A+ E+      D   +    +F G  G  ++    Q  I+QL    
Sbjct: 180 SKQRLVPVGSHAIAALREWLR----DSGASADTHVFPGRAGGAISQRAVQIRIKQLAVRQ 235

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+      H LRHSFA+H+L + GDLR +Q +LGH  ++TTQIYT+++ ++    + ++Y
Sbjct: 236 GMFKDVHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQH----LAKVY 291

Query: 315 DQTHPSITQK 324
           D  HP   +K
Sbjct: 292 DAAHPRAKRK 301


>gi|24372537|ref|NP_716579.1| integrase/recombinase XerD [Shewanella oneidensis MR-1]
 gi|34222794|sp|Q7ZAJ8|XERD_SHEON RecName: Full=Tyrosine recombinase xerD
 gi|24346549|gb|AAN54024.1|AE015540_4 integrase/recombinase XerD [Shewanella oneidensis MR-1]
          Length = 300

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/300 (33%), Positives = 154/300 (51%), Gaps = 16/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L   +GLS  TL +Y  D R F  +L      +     +R +   ++RA+++ R  
Sbjct: 14  FLDDLWSSKGLSDNTLSAYRTDLRHFDRYL------QSQGLRLRDVGQADVRAYLAYRVE 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q+    S  R LS ++ F  YL + K  +   +  + + K S  LP +L+E Q    VD 
Sbjct: 68  QQFARTSSARLLSSLRRFYNYLLQTKQISGDPMAQIESPKLSRHLPDSLSESQ----VDR 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +L   + +   ++ R+ A+L LLY  GLR+SE + LT + +   Q  +RI GKG K R+V
Sbjct: 124 LLAEPNVDDP-VECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIIGKGGKERLV 182

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+       +  Y      +L  +IQ  + F   R + +    F   I+      G+   
Sbjct: 183 PMGEMAITEVEHYLTSARHELLGHIQSDVVFPSKRSQMMTRQTFWHRIKLYASRAGIETE 242

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ Q HP
Sbjct: 243 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARAR----LQELHQQHHP 298


>gi|189219748|ref|YP_001940389.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4]
 gi|189186606|gb|ACD83791.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4]
          Length = 280

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/294 (32%), Positives = 144/294 (48%), Gaps = 26/294 (8%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           +++Y    ++F  F+ +   ++  I+  R   Y     F+ KR   K    S++   + +
Sbjct: 1   MRNYVQPLKEFFSFVKWQQCKEPKIEECRDYLY-----FLCKRPDLKPS--SIRVRFAAL 53

Query: 96  KSFLKYL-KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN---------VLLHT 145
           +SF  +  +++KI  ES    +   K   +LPR L+ +Q   L++               
Sbjct: 54  RSFFNFFYREKKINKESPFSQVMLPKPDRNLPRYLSLEQVQALLNAPQKKWEKEKEKGKK 113

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           S   +W   R+ A L  LYG GLR+ E  SL  +N       L ++GK  K R   L   
Sbjct: 114 SRWNEWQWKRDQAWLETLYGAGLRVGELSSLKRKNFFPSDLALLVEGKRKKERYCILGEV 173

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              ++  Y + CPF+        LF   RGKPL P  FQ  +++     GL  S + H L
Sbjct: 174 ATASLCSYLESCPFESEF-----LFVSSRGKPLTPRFFQLSLKEYLAIAGLDQSISPHKL 228

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           RH+FATHLL  G DLRSIQ +LGH  LSTTQIYT V++++    + E Y +THP
Sbjct: 229 RHTFATHLLEGGADLRSIQELLGHAHLSTTQIYTAVSAEH----LKESYFRTHP 278


>gi|34222990|sp|Q93C64|XERD_LACCA RecName: Full=Tyrosine recombinase xerD
 gi|15778434|gb|AAL07436.1|AF413208_1 tyrosine recombinase [Lactobacillus casei]
          Length = 293

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 156/302 (51%), Gaps = 19/302 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +++  L++ERGL++ T  SY+ D      F+A+ +++K   QT     +  I+AF+  + 
Sbjct: 7   DFIHYLDVERGLARTTQVSYQQD---LTTFMAWLSDQK---QTTFPEDFGVIQAFLKHQN 60

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
             K    S+ R +S ++ F ++L +        +  +   KK+  LP  L+  +      
Sbjct: 61  DTK-APASVSRMISALRKFYRFLLREGAIKSDPMTKIDTPKKAQHLPATLSGTEI----- 114

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           + L+     TK +  R+ AI  L+Y  GLR+SE + L    +    + L++ GKGDK R+
Sbjct: 115 DALMAKPDTTKPLGLRDRAIFELMYATGLRVSEVVGLRLDQLHLAMNLLQVTGKGDKERL 174

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           VP+ P     +  Y       L +  Q P  +F    G  L   V  + ++     +G+ 
Sbjct: 175 VPISPQAADWVNRYLQESRPRL-IKHQQPKAVFVNFHGHALTRQVIWKNLKAYIASVGIE 233

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T HTLRHSFAT LL NG DLR +Q +LGH  +STTQIYT++++++    ++ +Y +T
Sbjct: 234 KDVTPHTLRHSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQH----LVAVYHKT 289

Query: 318 HP 319
           HP
Sbjct: 290 HP 291


>gi|74318546|ref|YP_316286.1| tyrosine recombinase XerC [Thiobacillus denitrificans ATCC 25259]
 gi|74058041|gb|AAZ98481.1| tyrosine recombinase XerC [Thiobacillus denitrificans ATCC 25259]
          Length = 294

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/310 (32%), Positives = 151/310 (48%), Gaps = 27/310 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +LQ+L  ER LS  TL +Y  D    L  LA  T+ K     +  L+  +IR  I K R 
Sbjct: 7   YLQHLAAERRLSAHTLSAYARD----LENLARLTDGK----PLDTLTSHDIRGAIVKLRA 58

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +   S+ R LS  + F  +  +R    ++    +R  K S +LP  L+      L+D 
Sbjct: 59  GGLAAASVARQLSSWRGFYAFACRRLGYPDNPCAGLRPPKASRALPDILSPDACARLLDA 118

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                  +   +  R+ A+  L Y  GLR+SE + +   ++       R+ GKG K R+V
Sbjct: 119 ----PDGDEDLLATRDRAMFELFYSSGLRLSELVGIDLPDLDLASGEARVTGKGKKTRLV 174

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           P+    R+A+       P  L L ++ P   LF G RG  L P   Q  + +  R  GL 
Sbjct: 175 PV---GRQAVAAITAWLPLRLTL-VRTPTEALFVGQRGARLTPRNVQLRLARWARASGLG 230

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW--MMEIYD 315
                H LRH+FATH+L + GDLR++Q +LGH  +STTQ+YT++      DW  + + YD
Sbjct: 231 QHVHPHMLRHAFATHVLQSSGDLRAVQEMLGHASISTTQVYTHL------DWQHLAKAYD 284

Query: 316 QTHPSITQKD 325
           Q HP   +KD
Sbjct: 285 QAHPRARKKD 294


>gi|229061434|ref|ZP_04198779.1| Tyrosine recombinase xerC [Bacillus cereus AH603]
 gi|228717857|gb|EEL69505.1| Tyrosine recombinase xerC [Bacillus cereus AH603]
          Length = 301

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 160/311 (51%), Gaps = 31/311 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R +++  
Sbjct: 10  QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYLTTL 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137
             QK+  +S+ R +S ++S  ++L  R+   + N   + +L KK  S+P+ L  ++    
Sbjct: 65  HDQKLARKSVARKVSSLRSLYRFLM-REGYQKDNPFALASLPKKELSIPKFLYAEEL--- 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               L   S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG K 
Sbjct: 121 --EELFEVSDTGAPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 178

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248
           R +P     + A++ Y +      N   QL          +F   +GKPL     +  + 
Sbjct: 179 RYIPFGSYAQDALITYIE------NGRKQLAQKTEEQSHMVFLNAKGKPLTDQGVRYVLN 232

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L +   L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+     +
Sbjct: 233 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 288

Query: 309 WMMEIYDQTHP 319
            +  +Y + HP
Sbjct: 289 RLRSVYMKHHP 299


>gi|315023982|gb|EFT36984.1| tyrosine recombinase XerD [Riemerella anatipestifer RA-YM]
          Length = 303

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 160/303 (52%), Gaps = 15/303 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q++   L+ E+ LS  T+ +Y  D ++    L ++ E K+   +   +SY +I+ ++ + 
Sbjct: 8   QDFANALKFEKNLSNNTIDAYTRDIKK----LQYFAENKLNDTSALDISYEQIQEYLYQI 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                 +RS  R +S IK+F K+L + ++  ++    +   K    LP  LN ++  +L+
Sbjct: 64  SKNYTNERSQSRWISSIKAFFKFLHEDELRADNPARLLETPKLGLYLPDTLNFEEIESLI 123

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           + +      +T  +  RN  I+  LYGCGLR+SE + L   N+  ++  + + GKG K R
Sbjct: 124 EAI-----DKTTSLGKRNHTIIETLYGCGLRVSELVELKISNLNFEEEFIIVDGKGGKTR 178

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL     + I +Y      ++ +N +    LF   RG  L   +    I+ L     +
Sbjct: 179 LVPLAQYTAELIKDYLLEVRSEIKINPKHSDILFLNRRGSKLTRVMVFIIIKDLALQANI 238

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HT RHSFATHLL NG DLR IQ +LGH  ++TT+IYT++++++  + +M    +
Sbjct: 239 KKNISPHTFRHSFATHLLKNGADLRYIQEMLGHSSITTTEIYTHLDNEDLRETIM----K 294

Query: 317 THP 319
            HP
Sbjct: 295 YHP 297


>gi|294056182|ref|YP_003549840.1| integrase family protein [Coraliomargarita akajimensis DSM 45221]
 gi|293615515|gb|ADE55670.1| integrase family protein [Coraliomargarita akajimensis DSM 45221]
          Length = 307

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/302 (33%), Positives = 157/302 (51%), Gaps = 14/302 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +  +L +ER LS+ T+++Y      F+  +      +     IR +   ++R+F+  +  
Sbjct: 15  FCAHLALERRLSEYTVRNYRHAVEVFVESVQERGNWQGDFAAIRSV---DVRSFLVDQ-G 70

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK-SNSLPRALNEKQALTLVD 139
           +K+  R+L   +SG+++F  YL+K+    ESN     +L K    LP+ L E Q   L+D
Sbjct: 71  RKVSRRTLHNQVSGLRAFYLYLRKQG-QVESNPFAGVSLPKLDKPLPKFLTESQMRRLLD 129

Query: 140 N-VLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
             V L  + +    DA R+S IL LLYG GLR+SE  +L    I   +   R+ GKG K 
Sbjct: 130 APVELWKAGKLSEFDAFRDSLILELLYGGGLRVSELCALNHGAIDLQRGVARVIGKGQKE 189

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+ PL P   + +  + D       L+  +   R   G+ + P + Q+ ++       LP
Sbjct: 190 RLCPLGPVAIQCLKTFVDRFKLSAELDQAVACQRN--GRRMEPRMVQKQLKLHLAQAELP 247

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T H LRHS+ATHLL NG DLR++Q +LGH  LSTTQ+YT+V+       + E + Q 
Sbjct: 248 SDMTPHKLRHSYATHLLDNGADLRAVQELLGHANLSTTQVYTHVSIAR----LKEAHKQA 303

Query: 318 HP 319
           HP
Sbjct: 304 HP 305


>gi|291299701|ref|YP_003510979.1| integrase family protein [Stackebrandtia nassauensis DSM 44728]
 gi|290568921|gb|ADD41886.1| integrase family protein [Stackebrandtia nassauensis DSM 44728]
          Length = 317

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 145/301 (48%), Gaps = 15/301 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            ++ +L  E G S  T++ Y  D    L+ LA     ++    I  L     R++++ RR
Sbjct: 29  QFVHHLTHECGRSAHTVRGYRADVTSLLVHLAATGTTRLAGVDIAGL-----RSWLANRR 83

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q I   SL R +S +++F  +  ++          +      ++ P  L   QA TL  
Sbjct: 84  AQGIARASLARKVSAVRAFTAWAHRQGHLDADAGARLSGPSVPHNPPEILRTDQAETLAA 143

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                T+ +      R+ A++ LLY  G+R+SE   L   ++   ++ LR+ GKG K R 
Sbjct: 144 A----TASDGSATGLRDRAVVELLYATGIRVSELCGLDVASVDRSRNVLRVFGKGAKERT 199

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP      +A+ +Y      +L  +     L  G+RG  L+P   +R +R      G+P 
Sbjct: 200 VPFGIPAARAVDDYLQRARPELAADHSGDALLLGVRGGRLHPSTVRRVLRDWLSRTGMP- 258

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           S T H LRHS ATHLL  G DLRS+Q +LGH  + +TQIYT+V+++     +   Y Q H
Sbjct: 259 SLTPHGLRHSAATHLLDGGADLRSVQELLGHASIDSTQIYTHVSAER----LRGAYRQAH 314

Query: 319 P 319
           P
Sbjct: 315 P 315


>gi|163941569|ref|YP_001646453.1| site-specific tyrosine recombinase XerC [Bacillus
           weihenstephanensis KBAB4]
 gi|229013014|ref|ZP_04170179.1| Tyrosine recombinase xerC [Bacillus mycoides DSM 2048]
 gi|229134638|ref|ZP_04263448.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST196]
 gi|229168570|ref|ZP_04296293.1| Tyrosine recombinase xerC [Bacillus cereus AH621]
 gi|163863766|gb|ABY44825.1| tyrosine recombinase XerC [Bacillus weihenstephanensis KBAB4]
 gi|228614976|gb|EEK72078.1| Tyrosine recombinase xerC [Bacillus cereus AH621]
 gi|228648899|gb|EEL04924.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST196]
 gi|228748268|gb|EEL98128.1| Tyrosine recombinase xerC [Bacillus mycoides DSM 2048]
          Length = 301

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 160/311 (51%), Gaps = 31/311 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R +++  
Sbjct: 10  QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYLTTL 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137
             QK+  +S+ R +S ++S  ++L  R+   + N   + +L KK  S+P+ L  ++    
Sbjct: 65  HDQKLARKSVARKVSSLRSLYRFLM-REGYQKDNPFALASLPKKELSIPKFLYAEEL--- 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               L   S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG K 
Sbjct: 121 --EELFEVSDTGAPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 178

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248
           R +P     + A++ Y +      N   QL          +F   +GKPL     +  + 
Sbjct: 179 RYIPFGSYAQDALITYIE------NGRKQLAQKTEEQSHMVFLNAKGKPLTDQGVRYVLN 232

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L +   L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+     +
Sbjct: 233 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 288

Query: 309 WMMEIYDQTHP 319
            +  +Y + HP
Sbjct: 289 RLRSVYMKHHP 299


>gi|254445051|ref|ZP_05058527.1| site-specific recombinase, phage integrase family protein
           [Verrucomicrobiae bacterium DG1235]
 gi|198259359|gb|EDY83667.1| site-specific recombinase, phage integrase family protein
           [Verrucomicrobiae bacterium DG1235]
          Length = 307

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/313 (33%), Positives = 161/313 (51%), Gaps = 16/313 (5%)

Query: 13  ELLKERQNWLQ----NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           E  K R  W++    +L  ER LS  T+++YE     F  FL   T+ K     + ++S 
Sbjct: 3   EAEKWRVVWVEPFVRHLSGERRLSAYTVRNYEAALETFFQFLD--TDSKWG-GNLGKVSL 59

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            E R F+ +++ +++  R+L   +SG+++F KY  ++     + ++ +   K    LP  
Sbjct: 60  REARDFVIEQQ-RRVSRRTLHNYVSGLRTFFKYWIRQGKLEANPLVGLVLPKLPKKLPAF 118

Query: 129 LNEKQALTLVDNVLLHTSHE--TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + +KQ   L+D  +L   +E  T +   R+  +L LLYG G R+SE   LT   +  D+ 
Sbjct: 119 MTQKQVKLLLDGPMLLLENESITAFQAWRDRLVLELLYGAGFRVSELCGLTYGQVSFDEG 178

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
             RI GKG K RI PL   V  A+L+ +    F +      P+    R     P   Q  
Sbjct: 179 VARIVGKGGKSRICPL-GRVAMAVLDKWRR-EFAVGTAFADPVVLSNRRVKWTPRGVQLL 236

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +++      LP+  T H +RHS+ATHLL NG DLR +Q +LGH +LSTTQIYT+VN    
Sbjct: 237 LKKYLALADLPMDLTPHKIRHSYATHLLDNGADLRLVQELLGHAKLSTTQIYTHVNIGR- 295

Query: 307 GDWMMEIYDQTHP 319
              + E +DQ HP
Sbjct: 296 ---LKEAFDQAHP 305


>gi|28211202|ref|NP_782146.1| integrase/recombinase [Clostridium tetani E88]
 gi|28203642|gb|AAO36083.1| integrase/recombinase [Clostridium tetani E88]
          Length = 303

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 168/295 (56%), Gaps = 19/295 (6%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +++GLSK TL +Y  D  +FL FL    E+ + ++ +  ++Y +     S ++++K  + 
Sbjct: 24  MDKGLSKNTLDAYIRDVNRFLDFLKEREEDILDVEEVTIMAYVQ-----SLQKSRK-ANS 77

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S+ R++  I++F K+L K+    E  ++N    K   ++P+ L  ++      ++LL+  
Sbjct: 78  SIVRNVVSIRNFYKFLYKKGYIDEDPVINYELPKVKRNIPKVLTVEEV-----DILLNAP 132

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
           + ++    R+ A+L ++Y  G++++E L++T  ++    S ++ +G  +K RI+P+    
Sbjct: 133 NISEEKGIRDKAMLEVMYATGVKVTELLNMTVFDVNLKLSYIKCRGSKNKERIIPIGAYA 192

Query: 207 RKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
              + +Y  + P   N+NI     LF  ++G  +    F + +++  +  G+  S  ++T
Sbjct: 193 VNCLDDYLSVRP---NINIYNLDYLFLNLKGTQMTRQGFWKIVKKYAKISGIKKSINSYT 249

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           LRHSFA HLL NG D++S+Q +LGH  L+ TQIY+ +++K+    + E+Y +THP
Sbjct: 250 LRHSFAVHLLQNGADMKSVQELLGHSDLAATQIYSTISNKSK---IAEVYKKTHP 301


>gi|226945992|ref|YP_002801065.1| site-specific tyrosine recombinase XerD [Azotobacter vinelandii DJ]
 gi|226720919|gb|ACO80090.1| Site-specific tyrosine recombinase [Azotobacter vinelandii DJ]
          Length = 298

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/322 (31%), Positives = 156/322 (48%), Gaps = 29/322 (9%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT- 59
           M G   P+I  F         L+ L +E+GLS  T  +Y  D     +F  +  E  +  
Sbjct: 1   MPGVEHPQIERF---------LEALWLEKGLSAHTRAAYRSDLE---LFNGWLCERGLAL 48

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           ++  R+L    I   ++ R       RS  R LSG++ F +YL +  +      L +   
Sbjct: 49  VEVGREL----ILDHLAWRVDAGYKARSTARFLSGLRGFFRYLLREGVIAGDPTLQVELP 104

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           +    LP++L+E          LL    +   +  R+ A+L +LY CGLR+SE + L  +
Sbjct: 105 QLGRPLPKSLSEADV-----EALLAAPEDDDPLGLRDRAMLEVLYACGLRVSELVGLRLE 159

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKP 237
            +   Q  +R+ GKG K R+VPL      A LE Y  +  P  L       LF  +RG+ 
Sbjct: 160 QLNLRQGVVRVFGKGSKERLVPLGEEA-IAWLERYLVEARPLLLGGRPSDVLFPSLRGEQ 218

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    F   I+   R  G+  S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQI
Sbjct: 219 MTRQTFWHRIKHHARLAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQI 278

Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319
           YT++        + E++ + HP
Sbjct: 279 YTHIARAR----LQELHARHHP 296


>gi|299533133|ref|ZP_07046518.1| phage integrase [Comamonas testosteroni S44]
 gi|298718910|gb|EFI59882.1| phage integrase [Comamonas testosteroni S44]
          Length = 348

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 159/332 (47%), Gaps = 38/332 (11%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
            LPE+V         ++L+++ +++ L++ T   Y  D  +   F     +E +T+Q   
Sbjct: 15  QLPEVV--------HSYLEHVRVQKRLAERTHTLYALDLIKLQSFAQAAAQELLTLQP-- 64

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
               + IR F ++        R +   LSG +SF ++  +R++   + +  +R  K +  
Sbjct: 65  ----SHIRRFAAQMHGAGRSARGIALILSGWRSFFRWAAQRELVPFNPVEGVRGPKAAKP 120

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQN-- 180
           LP+AL    A+ L             W++AR+ A+  LLY CGLR++E   L L P    
Sbjct: 121 LPKALAVDDAVQLAS---FQNPEADPWMEARDVAMTELLYSCGLRVAELVGLDLRPDQQS 177

Query: 181 -------IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL--CPF----DLNLNIQL 227
                  I  +     +QGKG K RIVP+      A+  +  L  C       L    + 
Sbjct: 178 RHEGRGWIDLEAGDAHVQGKGSKRRIVPVGRMAILALQRWLALRSCALVGAAQLKAQDEA 237

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
            LF G RG+ L+       ++Q  +  GL      H LRHSFA+H+L + GDLR++Q +L
Sbjct: 238 ALFVGRRGERLSAQSVWSRLKQRGQQAGLATGVHPHVLRHSFASHMLQSSGDLRAVQELL 297

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           GH  ++TTQIYT ++ ++    + + Y++ HP
Sbjct: 298 GHSSIATTQIYTRLDFQH----LAQAYEKAHP 325


>gi|257876703|ref|ZP_05656356.1| site-specific recombinase [Enterococcus casseliflavus EC20]
 gi|257810869|gb|EEV39689.1| site-specific recombinase [Enterococcus casseliflavus EC20]
          Length = 299

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 154/307 (50%), Gaps = 21/307 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY-TEEKITIQTIRQLSYTEIRAFIS 76
           ++ + + L +ERG S+ T ++Y+ D   F  FL     E+ + ++      Y ++R ++S
Sbjct: 7   QEEFFRYLIVERGYSEKTKKAYQEDMNDFFHFLKESGNEDPLAVE------YRDVRVYLS 60

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               ++    S+ R ++ ++SF ++L K +I  E+    +   KK+  LPR   EK+   
Sbjct: 61  YLTERRYSRNSISRKMASLRSFYQFLTKHEIVKENPFAYIHLKKKNAKLPRFFYEKEMDA 120

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L  +V        + +  RN A+L +LYG GLR+SE  SLT   I  +   L I GKG+K
Sbjct: 121 LFQSVA-----GDEPLQQRNQALLEVLYGSGLRVSECSSLTLGAIDWESGVLLIHGKGNK 175

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
            R VP     + A+  Y       L    N   ++ LF    G  +     +  + Q+ R
Sbjct: 176 DRYVPFGSYAQAAVKRYLSSGRKQLMEKQNKEHEV-LFVNHLGDGITATGIEYVLNQIIR 234

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L      H LRH+FATHLL+NG D+R++Q +LGH  LSTTQIY +V      D + +
Sbjct: 235 KSSLDSKIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTK----DSLQK 290

Query: 313 IYDQTHP 319
            Y Q HP
Sbjct: 291 NYRQFHP 297


>gi|229162767|ref|ZP_04290724.1| Tyrosine recombinase xerC [Bacillus cereus R309803]
 gi|228620649|gb|EEK77518.1| Tyrosine recombinase xerC [Bacillus cereus R309803]
          Length = 302

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 157/310 (50%), Gaps = 29/310 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R +++  
Sbjct: 11  QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYLTTL 65

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +K+  +S+ R +S ++S  ++L +    T++        KK  S+P+ L  ++     
Sbjct: 66  HDEKLARKSVARKVSSLRSLYRFLMREGYRTDNPFALASLPKKELSIPKFLYAEEL---- 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L   S     +  RN A+L L+YG G+R+SE ++L   +I     T+ + GKG K R
Sbjct: 122 -EELFEVSDTETPLGQRNQALLELMYGTGIRVSECVNLQLTDIDFAVGTILVMGKGKKQR 180

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIRQ 249
            +P     + A++ Y +      N   QL          +F   +G PL     +  + +
Sbjct: 181 YIPFGSYAQDALITYIE------NGRKQLANKTEEHSHMVFLNAKGTPLTSRGVRYVLNE 234

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           L +   L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+     + 
Sbjct: 235 LIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----ER 290

Query: 310 MMEIYDQTHP 319
           +  +Y + HP
Sbjct: 291 LRSVYMKHHP 300


>gi|59711055|ref|YP_203831.1| site-specific tyrosine recombinase XerD [Vibrio fischeri ES114]
 gi|197335240|ref|YP_002155204.1| tyrosine recombinase XerD [Vibrio fischeri MJ11]
 gi|59479156|gb|AAW84943.1| site-specific tyrosine recombinase [Vibrio fischeri ES114]
 gi|197316730|gb|ACH66177.1| tyrosine recombinase XerD [Vibrio fischeri MJ11]
          Length = 298

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 157/303 (51%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + +ERGLS+ TL SY  D  + L +L    +      +I  +   E +A++  +
Sbjct: 9   ERFLDTMWMERGLSENTLASYRNDLVKLLQWL---EDNHYKCASISAMGLNEFQAYLVDK 65

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             ++    S  R LS ++ F +YL + KI  +     + + K    LP+ L+E+Q     
Sbjct: 66  EYKQT---SRARMLSALRRFFQYLHREKIRGDDPTALLASPKLPQRLPKDLSEEQV---- 118

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            + LL+  +    ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKGDK R
Sbjct: 119 -DALLNAPNVEDPLELRDRAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGDKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+  +    I ++     P  L       +F   R K +    F   I+      G+ 
Sbjct: 178 LVPMGENAVDWIEQFLTHGRPMLLGEKSSDVVFPSKRAKQMTRQTFWHRIKHYAVIAGID 237

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +I+ +
Sbjct: 238 SDKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIHQE 293

Query: 317 THP 319
            HP
Sbjct: 294 HHP 296


>gi|295426297|ref|ZP_06818957.1| tyrosine recombinase XerD [Lactobacillus amylolyticus DSM 11664]
 gi|295064036|gb|EFG54984.1| tyrosine recombinase XerD [Lactobacillus amylolyticus DSM 11664]
          Length = 299

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/305 (32%), Positives = 167/305 (54%), Gaps = 20/305 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L+  +IERGLS+ T+ +Y  D  +FL FL    +EKI       +   EI AF++++
Sbjct: 9   EDYLRFGQIERGLSENTITAYRQDLTEFLNFLQ---QEKIDSWPTEAV---EIDAFLARQ 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +       S+ R +S ++ F ++L ++ I   + ++ + + KK   LP AL + +    +
Sbjct: 63  KDLNKASSSISRMISSLRKFYQWLARQNIQKLNPMIEIDSPKKQRRLPVALTQDE----M 118

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D +L   + E K +  R+ A+L ++Y  G+R+SE ++L  +++  D   +++ GKG K R
Sbjct: 119 DRLLAAPNVEKK-LGLRDRALLEMMYATGMRVSEVINLQLEDVHPDLKLIKVFGKGSKER 177

Query: 199 IVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +VP+    L  + K   E  +        N +  +F   RG  L      + I+   +  
Sbjct: 178 LVPVSNIALDWLAKYEKEVRESLVLKQGRNTEF-VFLNNRGGSLTRQAVWQIIKHYCQLA 236

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            +    T HTLRH+FATHLL NG DLR +Q ILGH  +STTQIYTN+  K+    ++E+Y
Sbjct: 237 NINKDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLTQKH----ILEVY 292

Query: 315 DQTHP 319
            +THP
Sbjct: 293 IETHP 297


>gi|323524461|ref|YP_004226614.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1001]
 gi|323381463|gb|ADX53554.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1001]
          Length = 307

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 159/320 (49%), Gaps = 37/320 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L NLE ER LS  TL+ Y  +  +  +            + ++ L+  +IR  +++   
Sbjct: 10  YLSNLEHERRLSAHTLRGYAHELDELRLL--------TKGRPLQSLTAVDIRGAVARAHA 61

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS+   LS  ++F ++L  R     + +  +R  K++ +LP+AL+   A     N
Sbjct: 62  GGLTARSISHRLSAWRAFYRWLAGRVDLPANPVATVRAPKQAKALPKALSVDDA-----N 116

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL-----------TPQNIMDDQSTLR 189
            L+ +         R+ A+L L Y  GLR+SE + L           +   +  D + + 
Sbjct: 117 RLMESPPAASAEGLRDHAMLELFYSSGLRLSELVGLDVRFADVDGHRSAGWLKLDSAEVE 176

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
           + GKG++ RIVP+     +A+  +     ++   D +     PLF   RG  L+P V + 
Sbjct: 177 VLGKGNQRRIVPVGSKALEALNAWLAVRDEMVKHDPH-----PLFLSARGNRLSPNVVRE 231

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  ++ TQ+YT ++ ++
Sbjct: 232 RVKRAALVAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTGLDFQH 291

Query: 306 GGDWMMEIYDQTHPSITQKD 325
               +  +YDQ HP   ++D
Sbjct: 292 ----LAHVYDQAHPRAKKRD 307


>gi|260549307|ref|ZP_05823527.1| site-specific tyrosine recombinase [Acinetobacter sp. RUH2624]
 gi|260407713|gb|EEX01186.1| site-specific tyrosine recombinase [Acinetobacter sp. RUH2624]
          Length = 308

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/313 (32%), Positives = 170/313 (54%), Gaps = 30/313 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+  +I+   S+ T+ +YE D + FL    F   +KI ++ +     +++R ++++R  
Sbjct: 15  WLKERKIQNQ-SEHTITAYERDVKSFL---EFCDSKKINLKNVEA---SDLREYLAQRVE 67

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           Q ++   S++R L+ I+ F+K+ ++ K   E N  +   LK+    PR L     +  V+
Sbjct: 68  QDQLSASSMQRHLTSIRQFMKWAEQGKYL-EINPTDDFKLKRQ---PRPLPGMIDIETVN 123

Query: 140 NVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            +L     E K ID     R+ A+L LLY  GLR++E   LT ++I  ++  +RI GKG+
Sbjct: 124 QILDQPMPE-KPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRHLVRITGKGN 182

Query: 196 KIRIVPLLPSVRKAILEYYDLCP-----FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           K RIVP     ++++L +  +       FD N  +    F    G  L P   ++ ++  
Sbjct: 183 KTRIVPFGKKAKESLLNWLKVYKIWKGHFDQNAFV----FISQHGGVLTPRQIEKRVKLQ 238

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  G+ +    H LRH FA+H+LS+ GDLRS+Q +LGH  LSTTQIYT+++     D +
Sbjct: 239 AQRAGVNVDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHL 294

Query: 311 MEIYDQTHPSITQ 323
            ++YDQ HP  T+
Sbjct: 295 AQVYDQAHPRATK 307


>gi|90961925|ref|YP_535841.1| XerC/CodV family integrase/recombinase [Lactobacillus salivarius
           UCC118]
 gi|90821119|gb|ABD99758.1| Integrase/recombinase, XerC/CodV family [Lactobacillus salivarius
           UCC118]
 gi|300214646|gb|ADJ79062.1| Integrase/recombinase, XerC/CodV family [Lactobacillus salivarius
           CECT 5713]
          Length = 298

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 155/296 (52%), Gaps = 25/296 (8%)

Query: 21  WLQNLE----IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           W++  +    IE+  S  TL++Y  D + F+ F+    +E    ++ +++   ++ A++S
Sbjct: 5   WIEEFKKYLLIEKQYSDETLKAYSEDLQHFVDFI----DETGGAKSFKEIGSNDVHAYMS 60

Query: 77  KRRTQKIGDR----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
                 + DR    S+ R +S +++F  +L K ++T E+    ++  +   SLPR   EK
Sbjct: 61  Y-----LYDRYEMTSISRMISSLRAFYNFLIKNELTDENPFAYVQLKRHPRSLPRFFYEK 115

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L +     T  +T+ +  R+ A+L  LYG G+R+SE   L  +N+      + + G
Sbjct: 116 EMTALFEA----TEGDTQML-IRDRALLESLYGTGMRVSECTGLKMENVDLTNKKMLLHG 170

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQ 249
           KGDK R+VP     ++A+  Y++     L          +F    G PL P      ++Q
Sbjct: 171 KGDKDRLVPFGSYCQEALQRYFEQTRTPLMEKYHRDHDLVFVNHYGNPLTPAGVAYILKQ 230

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           + +   L  S   H LRH+FATHL+SNG DLR++Q +LGH  LSTTQIYT+V  ++
Sbjct: 231 IVKRSSLHTSIHPHELRHTFATHLMSNGADLRAVQELLGHSSLSTTQIYTHVTPEH 286


>gi|253997434|ref|YP_003049498.1| tyrosine recombinase XerD [Methylotenera mobilis JLW8]
 gi|253984113|gb|ACT48971.1| tyrosine recombinase XerD [Methylotenera mobilis JLW8]
          Length = 302

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/288 (32%), Positives = 146/288 (50%), Gaps = 23/288 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  + +E GLSK TL SY  D   F I+ +   ++ +TI       Y  ++  +SK  
Sbjct: 16  SFLDAIWLEDGLSKNTLDSYRLDLTAFAIWASSQHKQLLTIDKADVQQYLAVKFPLSK-- 73

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL-- 137
                 RS+ R ++ ++ F +Y  +  +      L + + K   SLP++LNE++ + L  
Sbjct: 74  -----PRSIGRLIASLRRFYRYNLRENLIAIDPTLQIESPKLPRSLPKSLNEEEVMALLN 128

Query: 138 ---VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
              VD+V          +  R+ A+L LLY  GLR+SE +S+    +    S +R+ GKG
Sbjct: 129 APNVDDV----------VGLRDKAMLELLYASGLRVSELVSIKTSEVSMSDSVVRVTGKG 178

Query: 195 DKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            K R+VP+  +  + I  Y     P  L   +   LF   RG  +    F   I++    
Sbjct: 179 SKTRLVPMGENAVEWISHYLKAARPQILQNRLSDALFVTNRGDAMTRQTFWHMIKRYALL 238

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            G+    + H LRH+FATHLL++G DLR +Q +LGH  +STTQIYT V
Sbjct: 239 AGITKHMSPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTYV 286


>gi|331701395|ref|YP_004398354.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929]
 gi|329128738|gb|AEB73291.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929]
          Length = 296

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/314 (32%), Positives = 162/314 (51%), Gaps = 39/314 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  L +ERGLS  T++SY  D ++     AF+ +   +I  I Q     I  ++   
Sbjct: 7   EDYLHYLRVERGLSDNTIKSYRQDLQEAG---AFFDKHAKSIADIDQFV---ILDYLETL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + Q     ++ R +S ++ F +YL +  +  +  +L + + KK+ +LP  L   Q     
Sbjct: 61  QRQHKARNTVIRVVSTLRRFFQYLVQFHVIVDDPMLKVDSPKKAQTLPDVLTVAQV---- 116

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            N LL      K +  R+ AIL  LY  GLR+SE ++L   ++    + L+  GKGDK R
Sbjct: 117 -NQLLSMPDTHKKLGLRDRAILETLYATGLRVSELVNLKLGDLHLPMNLLQTIGKGDKER 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------QRYIR 248
           I+P+            D+    LN  IQ    + + G+P +  +F          Q   +
Sbjct: 176 IIPI-----------SDVAIDWLNQYIQSTRVQLLSGRPNSEFLFLNAHGHQLTRQAIWQ 224

Query: 249 QLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +++Y+   G+    T HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT+V+ K+
Sbjct: 225 MIKKYVNQAGIKRHVTPHTLRHSFATHLLENGADLRIVQELLGHSDISTTQIYTHVSHKH 284

Query: 306 GGDWMMEIYDQTHP 319
               + E+Y++ HP
Sbjct: 285 ----LTEVYNKYHP 294


>gi|227112633|ref|ZP_03826289.1| site-specific tyrosine recombinase XerD [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 299

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/304 (33%), Positives = 159/304 (52%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER L++ TL SY  D R    +LA +  + +  Q++      +++AF++ R
Sbjct: 10  EQFLDALWLERNLAENTLASYRLDLRTLAEWLAHHDNDLLQAQSL------DLQAFLADR 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++ F +YL + K  ++     + + K    LP+ L+E Q    V
Sbjct: 64  VEGGYKATSSARLLSAMRRFFQYLYREKCRSDDPSAVLSSPKLPQRLPKDLSEAQ----V 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D +L   S E   ++ R+ A+L +LY  GLR+SE +SLT  ++   Q  +R+ GKG+K R
Sbjct: 120 DTLLNAPSIEQP-LELRDKAMLEVLYATGLRVSELVSLTMSDVSLRQGVVRVLGKGNKER 178

Query: 199 IVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL       I EYY     P+ LN      LF   R + +    F   I+       +
Sbjct: 179 LVPLGEEAVYWI-EYYLEHGRPWLLNGQTLDVLFPSNRARQMTRQTFWHRIKHYAVLASI 237

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 238 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQ 293

Query: 316 QTHP 319
           Q HP
Sbjct: 294 QHHP 297


>gi|297584490|ref|YP_003700270.1| tyrosine recombinase XerD [Bacillus selenitireducens MLS10]
 gi|297142947|gb|ADH99704.1| tyrosine recombinase XerD [Bacillus selenitireducens MLS10]
          Length = 296

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 152/296 (51%), Gaps = 14/296 (4%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E+GLS  T+++Y  D   +L FL    ++   I + + ++   +  ++         
Sbjct: 12  LSVEKGLSTKTIEAYAGDLSGYLTFL----QDTYGIFSWKDVNKKHVLHYLQWMNQSGKA 67

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S+ R+LS IKS   +L   K   E+  +++   +K   LP+ L    A++ V+  L  
Sbjct: 68  SSSISRTLSAIKSLHVFLMLEKEMDENPAVHIERPRKPAILPKTL----AISEVE-ALFS 122

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            +   + ID R  A+L +LY  G+R+SE  +L  +++  +   ++  GKG+  RI+PL  
Sbjct: 123 AAEGNRPIDIRTVAMLEVLYSTGMRVSELCALELKDLNLEMGFVKCTGKGNTERIIPLGE 182

Query: 205 SVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              +AI  Y D   P  +       LF    G  ++   F + IR L    G+    + H
Sbjct: 183 FATEAIRIYLDHARPVMMKDKEHHDLFVNHHGHRISRQGFWKLIRSLATKAGIQKEISPH 242

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           TLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT+++       M ++Y + HP
Sbjct: 243 TLRHSFATHLLENGADLRSVQEMLGHSDISTTQIYTHISQTR----MRDVYRKHHP 294


>gi|313673072|ref|YP_004051183.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939828|gb|ADR19020.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672]
          Length = 300

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 160/298 (53%), Gaps = 19/298 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L+IE+  S  T++SY  D  + + F+    +E I I   +++ +  +R +I+    + + 
Sbjct: 14  LKIEKNASDHTIRSYMNDLVELINFVK---DESIDI---KEIDFFALRGYITTLYDRSLS 67

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S++R +S IKSF K+L ++    E++   ++  KK   L +  N     TL++   L 
Sbjct: 68  KSSIERKISTIKSFFKFLTQKGYLEENHARMLKFPKKEKKLFKVFNIDDLFTLLE---LP 124

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
             +  + I  R++ ++ L+YG G+R+SE + +   +I      +R++GKG K R++PL  
Sbjct: 125 DKNTPQGI--RDALLMELMYGTGVRVSELVGIKIDDIDFQGLRVRVRGKGKKERMIPLAE 182

Query: 205 ---SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
                 K  L   D  P    +     LF    G  L+    +R + +  +  GLPL  +
Sbjct: 183 FHIDFIKKYLATRDDIPKSRTIKTD-KLFINKNGTSLSDRSVRRIVEKYLKMAGLPLDFS 241

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            H+ RHSFATH+L +G DLR+IQS+LGH  LSTTQ YT++N  +    +++IYD+ HP
Sbjct: 242 PHSFRHSFATHMLESGADLRTIQSLLGHSSLSTTQKYTHLNLSD----ILKIYDEAHP 295


>gi|213964731|ref|ZP_03392931.1| tyrosine recombinase XerC [Corynebacterium amycolatum SK46]
 gi|213952924|gb|EEB64306.1| tyrosine recombinase XerC [Corynebacterium amycolatum SK46]
          Length = 304

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/301 (30%), Positives = 142/301 (47%), Gaps = 26/301 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L   R LS  T+++Y  D    L  L            I +LS   IRA +  + 
Sbjct: 27  DFLDELTYSRRLSGATVRAYRADLMPLLAGL----------DHISELSTPVIRAHLGAKH 76

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +     SL R  + I+ F  +L  R+I      L +   KK   LP  L+ ++    V+
Sbjct: 77  AEGAARSSLARLTTSIRQFCSWLVARQILDADPSLRLSTPKKHQHLPEVLSPEK----VE 132

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             +   S E   + AR+ AI+ LLY  G+R+ E       ++   +  + + GKGDK RI
Sbjct: 133 EAIEKVSSEDSAVAARDLAIVELLYATGMRVEELCKADVSDVNFSRHIISVVGKGDKQRI 192

Query: 200 VPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP       A+  +  +   F  +   +  LF G+RG  LNP       RQ RR +    
Sbjct: 193 VPFGAPAEAALKGWLQVRGNFPASAQAEHALFLGVRGGRLNP-------RQARRVIHKWA 245

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRHS AT ++  G DLR +Q +LGH  L+TTQIYT+V++    D + E++ + H
Sbjct: 246 DVSPHALRHSAATAMVEGGADLRVVQEMLGHSSLATTQIYTHVSA----DRLREVHKRAH 301

Query: 319 P 319
           P
Sbjct: 302 P 302


>gi|226227913|ref|YP_002762019.1| tyrosine recombinase XerC [Gemmatimonas aurantiaca T-27]
 gi|226091104|dbj|BAH39549.1| tyrosine recombinase XerC [Gemmatimonas aurantiaca T-27]
          Length = 324

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/311 (31%), Positives = 159/311 (51%), Gaps = 20/311 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L +LE ER LS  TLQ+Y  D R+F  +LA      I      +L+ T IR +++   
Sbjct: 21  EFLTHLEKERDLSPNTLQAYRRDLREFASWLA--ATHGIAGWEWNELTRTNIRGYMAHLT 78

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +  RS+ R LS ++SF +++ + +    +    + + K   +LP  L+  QA TL+ 
Sbjct: 79  RRGLAKRSIARQLSAVRSFYRWMHRDERVDVNPARAVGSPKLPRTLPAYLDRTQAETLMQ 138

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQSTLRIQGKGDKI 197
           +     +   ++ D RN A+L L Y  GLR+SE   + L   +++  Q  ++++GKG K 
Sbjct: 139 HAATR-AQSLEFTDVRNLAMLELFYSSGLRLSELRGVDLADLDLVSQQ--VKVRGKGRKE 195

Query: 198 RIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGI-----RGKPLNPGVFQRYIR 248
           RIVPL    ++A+  Y      L        +   + RG      RG  ++    Q  + 
Sbjct: 196 RIVPLGDHAQRALRNYLVKRDALIAQASGGAVGRRVARGAVFLSERGARISARAVQHAMV 255

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            L   +      T H+LRH+FATHL+  G DLR++Q +LGH  +STTQIYT+ +     D
Sbjct: 256 TLMSAVSEGADLTTHSLRHTFATHLVDAGADLRAVQELLGHASISTTQIYTHTSV----D 311

Query: 309 WMMEIYDQTHP 319
            + ++Y Q HP
Sbjct: 312 RLKKVYRQAHP 322


>gi|121997992|ref|YP_001002779.1| tyrosine recombinase XerC [Halorhodospira halophila SL1]
 gi|121589397|gb|ABM61977.1| tyrosine recombinase XerC subunit [Halorhodospira halophila SL1]
          Length = 304

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 164/319 (51%), Gaps = 27/319 (8%)

Query: 19  QNWLQ----NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           + WL+    +L  ER L++ T + Y  D      F AF T+  +   +   +++  +RA+
Sbjct: 3   RGWLERFDRHLASERRLAEPTRRRYRQD---LDAFAAFCTDRGLA--SWAAVTHDVVRAW 57

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++ +R + +  R+L R L+ ++SF ++L +           +R  +    LP  L+  + 
Sbjct: 58  VAHQRRRGLAGRTLGRQLAALRSFYRFLIREGAVAADPAAEVRPPQTRRRLPGTLDPDEV 117

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----DQSTLRI 190
             L+D      +     + AR++A+  L+Y  GLR+SE + L   N+MD    D     +
Sbjct: 118 AGLLDG-----ADPGDPLQARDAALYELIYSSGLRLSEVIGL---NMMDLDRRDGLVRVL 169

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +GKG K R+VP+     +A+  +    P   +   +  +F G  G  L     QR +++L
Sbjct: 170 RGKGAKDRVVPVGRQALRALDAWLRHRPAWASAE-ETAIFVGRHGGRLGARTVQRRLQRL 228

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+      H LRHSFATH+L + GDLR+IQ +LGH  +STTQ+YT+++ ++    +
Sbjct: 229 AHLRGVQRRVHPHMLRHSFATHMLESSGDLRAIQELLGHADISTTQVYTHLDFQH----L 284

Query: 311 MEIYDQTHP-SITQKDKKN 328
            ++YDQ HP +  +KD  N
Sbjct: 285 AQVYDQAHPRARRRKDPDN 303


>gi|253699136|ref|YP_003020325.1| tyrosine recombinase XerC [Geobacter sp. M21]
 gi|251773986|gb|ACT16567.1| tyrosine recombinase XerC [Geobacter sp. M21]
          Length = 293

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 105/310 (33%), Positives = 149/310 (48%), Gaps = 31/310 (10%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E + +   LE ER +S  TL +Y  D  QFL FLA   EE        ++ +  IR +++
Sbjct: 4   ELEQFYSYLETERNVSPHTLAAYRSDLEQFLSFLAKEREEP----RAEEVDHLAIRRYLA 59

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           +   +     S+ R LS I++  +YL +     ++    +   K+   LP  LN  Q   
Sbjct: 60  QLH-KGCAKSSIGRKLSAIRALYRYLMREGKLEKNPAELVSTPKREKRLPFHLNIDQVSA 118

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTL-RIQGK 193
           LV             +  R+ AIL  LY CG+R+SE   LT  N+  MD  + L R+ GK
Sbjct: 119 LVT-----APAGGSELPLRDRAILETLYSCGIRVSE---LTGMNVGDMDLAAGLARVMGK 170

Query: 194 GDKIRIVPLLPSVRKAILEY----YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           G K R+VP+      A+  Y     D  P +       PL    RG  L      R +  
Sbjct: 171 GGKERLVPVGSCAGSALAAYLAERADPGPAE-------PLILNARGGRLTRRSVARIVDA 223

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
               +      + HTLRH+FATHLL  G DLR+IQ +LGH  LSTTQ YT+V+     D 
Sbjct: 224 HMLMIATMRKVSPHTLRHTFATHLLEGGADLRAIQELLGHASLSTTQKYTHVSI----DK 279

Query: 310 MMEIYDQTHP 319
           +ME+YD++HP
Sbjct: 280 LMEVYDKSHP 289


>gi|297539666|ref|YP_003675435.1| tyrosine recombinase XerD [Methylotenera sp. 301]
 gi|297259013|gb|ADI30858.1| tyrosine recombinase XerD [Methylotenera sp. 301]
          Length = 302

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 161/316 (50%), Gaps = 37/316 (11%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L E   ++ +L +E GLSK TL+SY  D   F  +L    ++ +T+         +I+ +
Sbjct: 11  LAELDTFIDHLWLEDGLSKNTLESYRLDLTSFAYWLTPQNKQLLTVDQ------ADIQQY 64

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++ +  Q    RS+ R ++ ++ F +YL +    +    + +++ K   SLP++LNE++ 
Sbjct: 65  LAVKFPQS-QPRSISRLIASMRRFYRYLMRDNKISLDPTIQIQSPKLPRSLPKSLNEEEV 123

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           + L     L+  +  +    R+ A+L LLY CGLR+SE + +    +      +RI GKG
Sbjct: 124 IAL-----LNAPNIVEAAGLRDRAMLELLYACGLRVSELVGVKVTEVSVSDGVVRITGKG 178

Query: 195 DKIRIVPL-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
            K R+VP+           L   R AIL+   LC           LF   RG+ +    F
Sbjct: 179 SKTRLVPMGEEAVDWISRYLSDARSAILQK-RLCD---------ALFVTNRGEAMTRQAF 228

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              I++     G+    + H LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  
Sbjct: 229 WYLIKRYALLAGINKHMSPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVAR 288

Query: 304 KNGGDWMMEIYDQTHP 319
           +     + +++ + HP
Sbjct: 289 ER----LKQLHHKHHP 300


>gi|114331554|ref|YP_747776.1| tyrosine recombinase XerC [Nitrosomonas eutropha C91]
 gi|114308568|gb|ABI59811.1| tyrosine recombinase XerC subunit [Nitrosomonas eutropha C91]
          Length = 321

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 107/334 (32%), Positives = 165/334 (49%), Gaps = 25/334 (7%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT------- 54
           +  +LP + S  LL E   +L  L   R LS  T   Y  D    LI L   T       
Sbjct: 6   DKQDLPALPS--LLGE---YLTYLSSTRSLSVQTQHHYRRD----LIALVRCTIAQHENG 56

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
             KI+  ++ +L   +IR FI++  +  +  RSL R LS  + F +YL +      +  L
Sbjct: 57  NNKISDISLTRLHSHDIRHFIARLHSSGLSGRSLARMLSAWRGFYRYLIRHHHHNGNPCL 116

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           ++R  K  + LP AL+  +A  L    L         +  R+ AI  L Y  GLR++E  
Sbjct: 117 DVRVPKSPHKLPHALSPDEAAQL----LTFNPSSNDMLATRDLAIFELFYSSGLRLTELT 172

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
            L P +I     T+R+ GKG+K RIVP+     +A+  +  L    L +  +  LF   R
Sbjct: 173 QLQPTDIDFTGGTVRVTGKGNKTRIVPVGELALRALQAWLPLRSAWL-IPGETALFLSQR 231

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G+ ++P      + Q  +   L      HTLRHSFA+HLL + GDLR++Q +LGH  + +
Sbjct: 232 GRRIHPRTIAYRLHQRAQLQNLDSRVHPHTLRHSFASHLLQSSGDLRAVQEMLGHSSIRS 291

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           TQ+YT+++ ++    + +IYDQ HP   +K K +
Sbjct: 292 TQVYTHLDFQH----LAKIYDQAHPRARKKPKTD 321


>gi|156740074|ref|YP_001430203.1| integrase family protein [Roseiflexus castenholzii DSM 13941]
 gi|254799355|sp|A7NFG3|XERC_ROSCS RecName: Full=Tyrosine recombinase xerC
 gi|156231402|gb|ABU56185.1| integrase family protein [Roseiflexus castenholzii DSM 13941]
          Length = 314

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 153/290 (52%), Gaps = 13/290 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L++L  ER LS  T+ +Y  D  QF  FL         +     +++ ++ AF+   
Sbjct: 6   EAFLRHLADERNLSANTIAAYRTDLEQFCEFL-----HGRRLFAWHDVTHDDVLAFLIDL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R ++    ++ R ++ +KSF  +L  R I        + + K    LPRAL  +Q   L+
Sbjct: 61  RERRYASSTVARRVAAVKSFFTFLTGRGIVQRDPTERIDSPKVDRDLPRALTPRQVDELL 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +  L   + E      R+ A+L LLY  G+R+SE ++L   ++  +++ +R  GK  ++R
Sbjct: 121 ELPLRSPTPER----IRDKAMLELLYATGVRVSELVALNVNDVDLERNEVRCIGKNGRVR 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           ++P+  S   A+ EY+D+    L   + +    LF   RGK L    F   ++Q    LG
Sbjct: 177 VLPINGSAATALEEYFDISRNQLARGSGSSTEALFLNHRGKRLTRQGFWLILKQYAEELG 236

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           L    T H LRHSFA H+L+ G DLR++Q +LGH  +STTQIYT++N ++
Sbjct: 237 LS-DLTPHVLRHSFAVHMLNAGFDLRAVQELLGHTSISTTQIYTHLNHES 285


>gi|148655021|ref|YP_001275226.1| phage integrase family protein [Roseiflexus sp. RS-1]
 gi|254799356|sp|A5URM3|XERC_ROSS1 RecName: Full=Tyrosine recombinase xerC
 gi|148567131|gb|ABQ89276.1| phage integrase family protein [Roseiflexus sp. RS-1]
          Length = 313

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 147/292 (50%), Gaps = 13/292 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L++L  ER L+  T+ +Y  D  QF  F++     +      R +S+ +I +F+   
Sbjct: 6   EAFLRHLADERNLAANTIAAYRTDLDQFCDFVSARNRREW-----RDVSHDDILSFMLYL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R ++    ++ R ++ +KSF  +L             + + K    LPRAL   Q   L+
Sbjct: 61  RERRYASSTVARRVAAVKSFFAFLTGSGAVPHDPTERIDSPKVDRDLPRALTPHQVDELL 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +  L   + E      R+ A+L LLY  G+R+SE ++L   +I    ST+R  GK  ++R
Sbjct: 121 ELPLRSPTPER----IRDKAMLELLYATGMRVSELVALNMTDIDLVHSTVRCTGKNGRVR 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           ++P+  S   A+ EY D     L      P   LF   RGK L    F   ++Q    +G
Sbjct: 177 VLPINGSAATALEEYCDNSRSQLARGSDAPIDALFLNHRGKRLTRQGFWLILKQYAEEMG 236

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           L    T H LRHSFA H+L+ G DLR++Q +LGH  +STTQIYT++N  +  
Sbjct: 237 LG-ELTPHMLRHSFAVHMLNAGADLRAVQELLGHTSISTTQIYTHINHASSA 287


>gi|325290382|ref|YP_004266563.1| Tyrosine recombinase xerC [Syntrophobotulus glycolicus DSM 8271]
 gi|324965783|gb|ADY56562.1| Tyrosine recombinase xerC [Syntrophobotulus glycolicus DSM 8271]
          Length = 300

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 149/291 (51%), Gaps = 12/291 (4%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R LS  T+ +Y+ D  QF  F A     +     +  +    +R +I +   + +  R++
Sbjct: 17  RNLSLHTISAYQSDLVQFTEFAAAELGVEFAEVELDLVDKIIVRTYIFQLADKGLSRRTV 76

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R L+ I++F +YL +  I  +S +L +   K   +LPR L  +         LL    +
Sbjct: 77  ARKLAAIRAFFRYLSREGIVKQSPMLKINTPKLGQTLPRFLYPEHM-----EKLLAVLDD 131

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
           +  +  R+  I+ LLYG GLR+SE + +  +++  + + +RI+GKG K RIVPL      
Sbjct: 132 SSEMGQRDKLIIELLYGSGLRVSELVGINIEDLDLESAFVRIRGKGGKERIVPLTEPAVL 191

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            +  Y D      +   Q  L R  +G  ++    +R + +L +   L      H LRH+
Sbjct: 192 ELRRYLDRWGRSQH---QEALIRNYQGTRMSTRSVRRILDKLEKKANLNQHIYPHMLRHT 248

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           FATHLL  G DLRS+Q +LGH +LS+TQIYT++  +     + E+Y Q+HP
Sbjct: 249 FATHLLDGGADLRSVQELLGHKKLSSTQIYTHLTREK----LREVYRQSHP 295


>gi|30248355|ref|NP_840425.1| phage integrase domain/SAM domain-containing protein [Nitrosomonas
           europaea ATCC 19718]
 gi|30138241|emb|CAD84249.1| Phage integrase:Phage integrase N-terminal SAM-like domain
           [Nitrosomonas europaea ATCC 19718]
          Length = 321

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 152/313 (48%), Gaps = 17/313 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE------EKITIQTIRQLSYTEIRA 73
            +L  L   R LS LT  SY  D    +  +A   +       ++T  ++ +L   +IR 
Sbjct: 18  EYLAYLASTRSLSLLTQHSYRRDLVALVCCIAAQHQSEHENGHEVTDASLTRLHSHDIRH 77

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           FI+      +  RSL R LS  + F +YL +    TE+   ++R  K    LP AL+  +
Sbjct: 78  FIAHLHHGGLSGRSLARMLSAWRGFYRYLMRHHHHTENPCQDIRVPKSPRKLPHALSPDE 137

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           A  L+             +  R+ A+  L Y  GLR++E   L P +I   +  +R+ GK
Sbjct: 138 AAQLL------AFDPADALATRDLAMFELFYSSGLRLAELTRLQPTDIDFSEGIVRVTGK 191

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K RIVP+     +A+  +  L    L  + +  LF    G+ ++P      + Q  R 
Sbjct: 192 GSKTRIVPVGEPALRALQAWLPLRSAWLT-SGETALFLSRHGQRIHPRTIAVRLHQRARL 250

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRHSFA+HLL + GDLR++Q +LGH  + +TQ+YT+++ ++    + +I
Sbjct: 251 QNLDDRVHPHALRHSFASHLLQSSGDLRAVQEMLGHSSIRSTQVYTHLDFQH----LAKI 306

Query: 314 YDQTHPSITQKDK 326
           YDQ HP   ++ K
Sbjct: 307 YDQAHPRAKKRPK 319


>gi|332638608|ref|ZP_08417471.1| integrase/recombinase [Weissella cibaria KACC 11862]
          Length = 305

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/307 (31%), Positives = 153/307 (49%), Gaps = 15/307 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK-ITIQTIRQLSYTEIRAFISKRR 79
           +L  L +ER  S+ T ++Y+ D  +F+ FL    + K + + TI Q    + R F+S   
Sbjct: 10  FLDYLRVERQYSEDTQKAYQSDITEFVAFLTDSGDGKPVDLTTIDQY---DARVFLSMLY 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +    R++ R +S +++F ++L++  + T +    ++  K    LPR   EK+   L D
Sbjct: 67  EKGDVSRTIARKVSSLRAFYRFLERNAVVTTNPFAGVQLKKAGQHLPRYFYEKELNKLFD 126

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            V+  TS               +LYG G R+SEA  LT   +      + I GKG+K RI
Sbjct: 127 VVMADTSLLGLRNRLLLE----ILYGTGARVSEAAGLTLGMLDQAARVITITGKGNKTRI 182

Query: 200 VPLLPSVRKAILEYY-DLCPFDLNLN--IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           VP       A+  Y  D  P  L  +  +   LF   RG+ L     +  ++QL +  GL
Sbjct: 183 VPYGQYAADALASYLRDARPQLLAKSPVMHDKLFVNQRGQALTASGIEYILKQLAKKAGL 242

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               +AH  RH++AT +L+NG DLR++Q +LGH  LSTTQIYT+V +    D + + Y  
Sbjct: 243 TQMISAHMFRHTYATDMLNNGADLRTVQQLLGHSSLSTTQIYTHVTT----DALQKSYRD 298

Query: 317 THPSITQ 323
             P  T+
Sbjct: 299 FFPRATE 305


>gi|114048718|ref|YP_739268.1| tyrosine recombinase XerD [Shewanella sp. MR-7]
 gi|113890160|gb|ABI44211.1| tyrosine recombinase XerD [Shewanella sp. MR-7]
          Length = 300

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 99/300 (33%), Positives = 155/300 (51%), Gaps = 16/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L   +GLS  TL +Y  D R F  +     ++   ++ I ++   ++RA+++ R  
Sbjct: 14  FLDDLWSSKGLSDNTLSAYRTDLRHFDRY-----QQSQGLRLI-EVGQADVRAYLAYRVQ 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q+    S  R LS ++ F  YL + K      +  + + K S  LP +L+E Q    VD 
Sbjct: 68  QQFARTSSARLLSSLRRFYTYLLQTKQIAGDPMALIESPKLSRQLPDSLSESQ----VDR 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +L   + +   ++ R+ A+L LLY  GLR+SE + LT + +   Q  +RI GKG K R+V
Sbjct: 124 LLAEPNVDDP-VECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLV 182

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+       +  Y      +L  NIQ  + F   R + +    F   I+      G+   
Sbjct: 183 PMGELAITEVERYLSFARHELLGNIQSDVVFPSKRSQMMTRQTFWHRIKLYASRAGIETE 242

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ Q HP
Sbjct: 243 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARAR----LQELHQQHHP 298


>gi|300173202|ref|YP_003772368.1| tyrosine recombinase XerC [Leuconostoc gasicomitatum LMG 18811]
 gi|299887581|emb|CBL91549.1| tyrosine recombinase XerC [Leuconostoc gasicomitatum LMG 18811]
          Length = 303

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/293 (31%), Positives = 153/293 (52%), Gaps = 12/293 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +E+Q +   +E ER  S LTL++Y  D  +F+IFL       I  +T++ L   ++R ++
Sbjct: 4   REQQLYQVYIESERQYSPLTLKAYLSDIDEFVIFLT-KNGGFINFKTVQIL---DVRVYL 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +K+   ++ R +S ++ F +++   +  T++   N+   K  N LP    E +  
Sbjct: 60  NDLYERKLARTTISRKISSLRMFYQFMIANQFVTDNPFDNVALRKHENHLPEFFYETEMT 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           TL D  + +   +  W   RN+AIL  LY  G R++E  +L    +   Q  + I GKG+
Sbjct: 120 TLFD--VAYNPEDLLW--QRNAAILEFLYATGARVAEIANLMTTQLDFSQRLVLIHGKGN 175

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRR 252
           K R VP      +A+ +Y       L +  Q+P   +F   RG+P+        + +L +
Sbjct: 176 KDRYVPFGHFAAQALSQYLKETRPKL-IAKQVPHDFVFVNHRGEPITTAGITYILNELMK 234

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
              L      H LRH+FATHLL+NG D+R++Q +LGH  LSTTQ+YT+V  +N
Sbjct: 235 RSTLTGKIHPHMLRHTFATHLLNNGADMRTVQELLGHVNLSTTQMYTHVTREN 287


>gi|297242750|ref|ZP_06926688.1| site-specific recombinase XerD [Gardnerella vaginalis AMD]
 gi|296888961|gb|EFH27695.1| site-specific recombinase XerD [Gardnerella vaginalis AMD]
          Length = 319

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 96/320 (30%), Positives = 167/320 (52%), Gaps = 19/320 (5%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI-TIQT 62
           NN+PE  +  +    Q ++ +++IERGLSK T+ +Y  D + +  +L  Y E KI  I T
Sbjct: 12  NNIPEEFALHI----QRFIAHIDIERGLSKKTVSAYASDLQDYTCWL--YDERKIKDITT 65

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           I QL   +I ++I       +G R++ R L+ I  + +++             ++  K++
Sbjct: 66  ISQL---DIESYIRTLNELGLGTRTVARRLASIHEWHRFMLAHGDIQADVSAQVKAPKQA 122

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           + LP  L+ ++   +++      S +   I  R++A+L  LY  G RISEA+ +  ++I 
Sbjct: 123 DYLPDVLSIEEVNRVIEAAGNFGSSDA--ISIRDTALLEFLYATGARISEAVGVKFEDID 180

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL---FRGIRGKPLN 239
            ++S +++ GKG K R+VP+     +A+  Y +    +L    +  L   F   RG  L+
Sbjct: 181 LNESVVKLTGKGSKQRLVPIGGCAVRALRNYMEKSRPELASKGKRELHTIFLNKRGNALS 240

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                  + Q      L      HTLRHS ATHL++ G D+R++Q +LGH  ++TTQIYT
Sbjct: 241 RQSAWAIVTQAGERAKLDKPLHPHTLRHSLATHLIAGGADVRTVQELLGHASVTTTQIYT 300

Query: 300 NVNSKNGGDWMMEIYDQTHP 319
           +++     D ++E Y  +HP
Sbjct: 301 HISP----DALVEAYVMSHP 316


>gi|289550729|ref|YP_003471633.1| Site-specific recombinase XerD [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180261|gb|ADC87506.1| Site-specific recombinase XerD [Staphylococcus lugdunensis
           HKU09-01]
          Length = 295

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 99/304 (32%), Positives = 157/304 (51%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ ++IE+GLS  T+ +Y  D  ++ ++L     E   I+ I  +    I+  +   
Sbjct: 6   EEYLKFIQIEKGLSPNTIGAYRRDLDKYKLYL-----ETRHIEHIDFIDRQTIQECLGYL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q    +SL R +S I+SF ++  + K   +   + +   K    LP  L        +
Sbjct: 61  IDQGSSAKSLARFISTIRSFHQFALREKYAAKDPTVLLETPKYEKKLPDVLE-------I 113

Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           D V  LL     +K    R+  IL L+Y  G+R+SE + +  +NI      +R+ GKGDK
Sbjct: 114 DEVVRLLEAPDLSKKNGYRDRTILELMYATGMRVSELVHIEIENINVIMGFVRVFGKGDK 173

Query: 197 IRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            RI+PL  +V   +  Y  ++ P  L   +   LF  + GKPL+     + I+Q      
Sbjct: 174 ERIIPLGDTVIDYLKTYMKEIRPQLLKSTVTNVLFLNMHGKPLSRQGIWKMIKQYGIKSN 233

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + +IY+
Sbjct: 234 ITKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKAQ----IRQIYN 289

Query: 316 QTHP 319
           Q HP
Sbjct: 290 QYHP 293


>gi|228992559|ref|ZP_04152486.1| Tyrosine recombinase xerC [Bacillus pseudomycoides DSM 12442]
 gi|228767193|gb|EEM15829.1| Tyrosine recombinase xerC [Bacillus pseudomycoides DSM 12442]
          Length = 302

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 100/313 (31%), Positives = 164/313 (52%), Gaps = 35/313 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R +++  
Sbjct: 11  QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYVDVRLYLTTL 65

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137
             +K+  +S+ R +S ++S  ++L  R+   E N   + +L KK  S+P+ L  ++    
Sbjct: 66  HDEKLARKSVARKVSSLRSLYRFLM-REGYREDNPFALASLPKKELSIPKFLYVEEL--- 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               L   S     +  R+ A+L L+Y  G+R+SE +SL   +I     T+ + GKG K 
Sbjct: 122 --EKLFEVSDVKTPLGQRDQALLELMYATGIRVSECVSLQLTDIDFSVGTILVTGKGKKQ 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPL-NPGVFQRYI 247
           R VP     + A++ Y +      N   QL          +F   +GKPL + GV  RYI
Sbjct: 180 RYVPFGSYAQDALITYIE------NGRKQLAKKTEEHSQMVFLNAKGKPLTDRGV--RYI 231

Query: 248 -RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
             +L +   L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+    
Sbjct: 232 LNELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK--- 288

Query: 307 GDWMMEIYDQTHP 319
            + +  +Y + HP
Sbjct: 289 -ERLRSVYMKHHP 300


>gi|150009884|ref|YP_001304627.1| tyrosine type site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|256838407|ref|ZP_05543917.1| tyrosine recombinase XerD [Parabacteroides sp. D13]
 gi|262382840|ref|ZP_06075977.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_33B]
 gi|298374238|ref|ZP_06984196.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_19]
 gi|301312384|ref|ZP_07218300.1| tyrosine recombinase XerD [Bacteroides sp. 20_3]
 gi|149938308|gb|ABR45005.1| tyrosine type site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|256739326|gb|EEU52650.1| tyrosine recombinase XerD [Parabacteroides sp. D13]
 gi|262295718|gb|EEY83649.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_33B]
 gi|298268606|gb|EFI10261.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_19]
 gi|300829567|gb|EFK60221.1| tyrosine recombinase XerD [Bacteroides sp. 20_3]
          Length = 301

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 156/296 (52%), Gaps = 12/296 (4%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E+ LS  ++ +Y  D  + L    F  +EK   + ++++SY +++ FI++ R   I 
Sbjct: 15  LRLEKSLSANSIDAYLTDLDKLL---RFAEDEK---KDVKEISYDDLQQFIAQLRDIGIH 68

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            RS  R +SGIKSF ++L      T      + + K    LP  L   +  +++D + L 
Sbjct: 69  PRSQARIISGIKSFYRFLLLDNYITNDPTELLESPKIGLKLPEVLTVNEINSILDTIDL- 127

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
               T     RN A+L +LY CGLR+SE   L   +I   +  +R++GKG K R+VP+  
Sbjct: 128 ----TLPEGQRNRAMLEVLYSCGLRVSELTGLRYSDIYPKEGFIRVEGKGSKQRLVPISE 183

Query: 205 SVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              + I  Y YD     +    +  LF   RG  L+  +    I+Q     G+  + + H
Sbjct: 184 VALREIKNYLYDRNSVVVKKGFEDILFLSRRGTALSRIMVFHIIKQQTEAAGIHKNVSPH 243

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           T RHSFATHLL  G +LR+IQ +LGH +++TT+IYT+++ +     ++E + ++ P
Sbjct: 244 TFRHSFATHLLEGGANLRAIQEMLGHEKITTTEIYTHIDREFLRKEILEHHPRSRP 299


>gi|82701881|ref|YP_411447.1| tyrosine recombinase XerD [Nitrosospira multiformis ATCC 25196]
 gi|82409946|gb|ABB74055.1| Tyrosine recombinase XerD [Nitrosospira multiformis ATCC 25196]
          Length = 303

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 156/308 (50%), Gaps = 16/308 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ELL E   +   L +E GLS+ T++SY  D  QF  + A    +  +  T+   +++++ 
Sbjct: 9   ELLDE---FCDALWLEDGLSRNTMESYRSDLEQFGDWFARQKPDDSSFLTV---THSDLL 62

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F++ R +  +   +  R LS +K F ++L ++        LN+   +   +LP +L E 
Sbjct: 63  GFMTGRFSAGMKASTTSRELSSLKRFYRFLLRQGKINADPTLNIDTPRLPRNLPVSLTEA 122

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
                    LL     T  +  R+ A+L +LY  GLR+SE +SL    I  D   +RI G
Sbjct: 123 DV-----EALLGAPDVTFPLGLRDRAMLEVLYASGLRVSELVSLESGQISLDMGVVRIMG 177

Query: 193 KGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG K R+ PL     + ++ Y  ++ P  L+      LF   RG  +    F   I++  
Sbjct: 178 KGGKERLTPLGEEALEWMVRYIKEIRPGLLDGKSSNALFVTYRGAGMTRQAFWYLIKRYA 237

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R  G+    + H LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     + 
Sbjct: 238 RQAGITKPLSPHGLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER----LK 293

Query: 312 EIYDQTHP 319
           +I++  HP
Sbjct: 294 KIHEMHHP 301


>gi|167628445|ref|YP_001678944.1| tyrosine recombinase xerd, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167591185|gb|ABZ82933.1| tyrosine recombinase xerd, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 328

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 151/306 (49%), Gaps = 16/306 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ++    +L +L +ERGLS  T+ +Y  D      FLA     +  I     ++ ++++ +
Sbjct: 24  MRHGDAFLAHLAVERGLSGNTIDAYRRDLADLAAFLA-----ERGIGDPADVTRSDLQDY 78

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +     + +   +  R L+ IK +  +L    I  +     +   +    LP  LN ++ 
Sbjct: 79  LYHTYRRGLSAATRARRLAAIKGYFGFLFDEAIRRDDPTELIDGPRLQRLLPDVLNVEEV 138

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+       +     +  R+ A+L  +Y CGLR+SE ++LT   +  D   +R+ GKG
Sbjct: 139 AALLQ------APPRTIVGLRDRAMLETMYACGLRVSELIALTLDQVRLDLGLVRVVGKG 192

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            K RIVPL      AI EY       L     +  LF   RGKPL    F + ++     
Sbjct: 193 MKERIVPLGGLAAAAIEEYLSRTRGTLAGHGAEKHLFLNQRGKPLTRQGFWKILKAYAAE 252

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    T HTLRHSFATHLLSNG DLR++Q +LGH  +STTQIYT++        + E+
Sbjct: 253 AGIAKEVTPHTLRHSFATHLLSNGADLRAVQEMLGHADVSTTQIYTHLTMGR----LREV 308

Query: 314 YDQTHP 319
           YD++HP
Sbjct: 309 YDRSHP 314


>gi|255530752|ref|YP_003091124.1| integrase family protein [Pedobacter heparinus DSM 2366]
 gi|255343736|gb|ACU03062.1| integrase family protein [Pedobacter heparinus DSM 2366]
          Length = 294

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 155/301 (51%), Gaps = 12/301 (3%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  L+ E+  S  T+QSY+ D  QF  F+    E  +T     ++ Y  IR FI   
Sbjct: 4   EHFLTYLQHEKRYSSHTIQSYQTDLLQFTDFMQQTFELPLT-----EVKYVHIRNFIVAL 58

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
              +I + S+ R LS ++SF KYL +  + + + +  ++  K    LP  ++E +   L+
Sbjct: 59  MEDEISENSVGRKLSALRSFYKYLLRENVLSSNPMALVKAPKVPKRLPVFVDEGKLDLLL 118

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D+       +  +   R+  ++  L+G G+R++E LSL   +I   +ST+R+ GK  K R
Sbjct: 119 DS---EEFFDGSFPSLRDKTVIETLFGTGIRLAELLSLKETDINFYESTIRVMGKRSKER 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVP+  ++R+    Y +L       N    LF   +G    P +  R +++   Y+    
Sbjct: 176 IVPIGKTLREQFRVYMELKTLQNFDNKTTMLFVTDKGAAAYPKLIYRTVQRYLTYVSTQD 235

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRHS+AT LL+ G DL +I+ +LGH  L+ TQ+YT+    N  + +  IY Q H
Sbjct: 236 KKSPHVLRHSYATSLLNRGADLNAIKELLGHASLAATQVYTH----NSVERLKTIYKQAH 291

Query: 319 P 319
           P
Sbjct: 292 P 292


>gi|261337541|ref|ZP_05965425.1| tyrosine recombinase XerD [Bifidobacterium gallicum DSM 20093]
 gi|270277948|gb|EFA23802.1| tyrosine recombinase XerD [Bifidobacterium gallicum DSM 20093]
          Length = 306

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 99/314 (31%), Positives = 151/314 (48%), Gaps = 31/314 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISK 77
           + +L ++++ERGLS+ TL +Y  D  Q+L FL A    E   I+T       ++  F+  
Sbjct: 8   RKFLTSMDVERGLSRATLDAYRTDLEQYLTFLDARGLNEPTRIRT------EDVEQFVQH 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q +   S+ R L+ ++ F ++L + +         M   K    LP  L+      L
Sbjct: 62  LDAQGLQPASIARRLACVRMFHRFLLQERAVAVDVTATMHAPKTGEHLPDVLSVDDVFQL 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D      S     +  R+ A+L +LY  G R+SEA+ L   +I +    +R+ GKG K 
Sbjct: 122 LDTAQQMAS-TGDVVATRDWALLEMLYATGARVSEAVGLNLDDIDETDRVMRLTGKGSKQ 180

Query: 198 RIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP   +  +A+ +Y D   P    L  +    R +R   LN    +R  R  R+    
Sbjct: 181 RLVPFGSTAAQALQQYLDASRPV---LEAKAKGERELRAVWLN----KRGKRLSRQSAWE 233

Query: 257 PLSTTA-----------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            L T A           HTLRHSFATHL+  G D+RS+Q +LGH  + TTQIYT+V+   
Sbjct: 234 VLQTAAGRAKLTRPIHPHTLRHSFATHLIQGGADVRSVQELLGHASVQTTQIYTHVSP-- 291

Query: 306 GGDWMMEIYDQTHP 319
             D ++E Y   HP
Sbjct: 292 --DSLIEAYAMAHP 303


>gi|188534907|ref|YP_001908704.1| Tyrosine recombinase XerD [Erwinia tasmaniensis Et1/99]
 gi|188029949|emb|CAO97833.1| Tyrosine recombinase XerD [Erwinia tasmaniensis Et1/99]
          Length = 297

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 98/303 (32%), Positives = 154/303 (50%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L IER L++ T+ SY  D R    +LA      +  Q I      ++RAF+++R
Sbjct: 8   EQFLDALWIERNLAQNTVASYRLDLRSLCDWLACQPLSLLNAQAI------DLRAFLAQR 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q   L+
Sbjct: 62  LEGGYKASSSARLLSAMRRLFQYLYREKLREDDPSALLSSPKLPQRLPKDLSEAQVERLL 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            +  L        I+ R+ A+L LLY  GLR++E + LT  +I   Q  +R+ GKG+K R
Sbjct: 122 QSPCLEQP-----IELRDKAMLELLYATGLRVTELVGLTLSDISLRQGVVRVLGKGNKER 176

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+       I ++ +   P+ LN      LF   R K +    F   I+      G+ 
Sbjct: 177 LVPMGEEAVHWIEQFIEYGRPWLLNGQTLDVLFPSNRAKQMTRQTFWHRIKHYATLAGID 236

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q
Sbjct: 237 SDKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQ 292

Query: 317 THP 319
            HP
Sbjct: 293 HHP 295


>gi|332877022|ref|ZP_08444775.1| tyrosine recombinase XerD [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332685130|gb|EGJ57974.1| tyrosine recombinase XerD [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 304

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 99/318 (31%), Positives = 159/318 (50%), Gaps = 28/318 (8%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY----TEEKITIQTIRQLSYTEI 71
           K  +++   L ++RGLS+ T  SY  D  + + +L  Y    T   I   T+RQ  Y   
Sbjct: 5   KTNEDFQHYLRLQRGLSENTAVSYGLDIEKLIQYLEKYNITETPNNIGEDTLRQFVYEVG 64

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           +          +  RS  R +S +K F KY+   K   +  +  + + K    LP  L+ 
Sbjct: 65  KG---------LNARSQARLISSLKGFFKYMMYEKNREDFPMEIIESPKIGMKLPDTLSL 115

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           ++   ++ ++ L T         RN AI+  LY CGLR+SE +SL   ++  ++  +R+ 
Sbjct: 116 QEIDAMLASIDLSTEE-----GHRNKAIIETLYACGLRVSELVSLRLSDLFFEEDFIRVM 170

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           GKG K R++P+    +K I  Y D     L +    +  +F   RGK L   +    +RQ
Sbjct: 171 GKGSKQRLIPIEHYTQKQISHYIDNQRKSLKIAKGNEDYVFLNRRGKQLTRAMIFTIVRQ 230

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           +   +GL    + HT RHSFATHLL NG +LR+IQ +LGH  ++TT+IY +V       +
Sbjct: 231 VAENIGLKKKISPHTFRHSFATHLLENGANLRAIQMMLGHENITTTEIYVHVEK----SY 286

Query: 310 MMEIYDQTHP----SITQ 323
           + E+ ++ HP    S+TQ
Sbjct: 287 LREVLEKFHPRQKMSLTQ 304


>gi|62185317|ref|YP_220102.1| site-specific tyrosine recombinase XerD [Chlamydophila abortus
           S26/3]
 gi|62148384|emb|CAH64151.1| putative site-specific recombinase [Chlamydophila abortus S26/3]
          Length = 299

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 157/304 (51%), Gaps = 35/304 (11%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI-TIQTIRQLSYTEIRAFISKRRTQKI 83
           L ++RGLS  ++ +Y  D   FL         KI TI +I ++S   +  F+ +   +K 
Sbjct: 18  LSVDRGLSSNSISAYCQDITLFL---------KINTITSIAEISQDSVHLFVRQLHKRKE 68

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
            + +L R L  +K F ++LK+ K+     ++    + K   LP  L  ++   L+   + 
Sbjct: 69  AEATLARRLIALKVFFRFLKEAKLLEHPPLIEHPKIWKR--LPTVLTPQEVDALL--AIP 124

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
             +  +  I  R++AIL+ LY  G+R+SE   L   ++ DD   LR+ GKG K R+VPL 
Sbjct: 125 KKTPTSSLISTRDTAILHTLYSTGIRVSELCGLHIGDVSDD--FLRVTGKGSKTRLVPLG 182

Query: 204 PSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLN-PGVFQR---YIRQLRRYLG 255
                AI  Y  LCPF  NL    + +  LF  IRG  L    V++R   Y +Q+     
Sbjct: 183 KLASAAIDAY--LCPFRENLQKKQSEEHHLFLSIRGHKLERSCVWKRIHYYAKQVTHKRV 240

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            P     H+LRH+FATHLL N  DLR IQ +LGH R+++T++YT+V      D +ME + 
Sbjct: 241 SP-----HSLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHV----AADTLMENFL 291

Query: 316 QTHP 319
             HP
Sbjct: 292 SYHP 295


>gi|298346458|ref|YP_003719145.1| putative integrase/recombinase XerD [Mobiluncus curtisii ATCC
           43063]
 gi|298236519|gb|ADI67651.1| possible integrase/recombinase XerD [Mobiluncus curtisii ATCC
           43063]
          Length = 323

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 101/330 (30%), Positives = 158/330 (47%), Gaps = 20/330 (6%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY-TEEKIT 59
           M  NN   + + E+  +   WL    + RGLS  T+++Y  D R+ + FL    + +   
Sbjct: 1   MSENNPAAVFAREITADFGQWL---SVNRGLSPQTVRAYLTDLRELMTFLVDSDSGDGPA 57

Query: 60  IQTIRQ--LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
            Q +R    +   IRA++       +   +L R ++  ++F  + + R I       N+R
Sbjct: 58  AQQLRADLANPARIRAWLGAMSRAGMSRATLARRVASFRTFASWAQVRGIVPGDAGQNLR 117

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW----IDARNSAILYLLYGCGLRISEA 173
             +  N+LP  L+   A  L++        E       +  R+ A L LLY  G+R+SE 
Sbjct: 118 ASRPDNALPTVLSATDAAHLLETARAAAYPEASTAPNPVKLRDWAALELLYATGIRVSEL 177

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----L 229
             L   NI   Q T+R+ GKGDK R+VP       A+ EY +     L +N + P    +
Sbjct: 178 TGLELGNINKSQRTVRVTGKGDKQRVVPYGIPAGLALEEYLEKGRPAL-VNPEKPALNRV 236

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F G +G  L+  + +  + +L     +P     H LRH+ ATHLL  G DLRS+Q ILGH
Sbjct: 237 FLGAKGGMLDTRIVRGMLHRLTAQAEVP-DLGPHGLRHTAATHLLDGGADLRSVQEILGH 295

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
             L+TTQ YT+++     D +  +Y Q HP
Sbjct: 296 ASLATTQRYTHLSM----DKLRAVYLQAHP 321


>gi|325570911|ref|ZP_08146560.1| site-specific tyrosine recombinase XerC [Enterococcus casseliflavus
           ATCC 12755]
 gi|325156315|gb|EGC68498.1| site-specific tyrosine recombinase XerC [Enterococcus casseliflavus
           ATCC 12755]
          Length = 312

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 154/307 (50%), Gaps = 21/307 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY-TEEKITIQTIRQLSYTEIRAFIS 76
           ++ + + L +ERG S+ T ++Y+ D   F  FL     E+ + ++      Y ++R ++S
Sbjct: 20  QEEFFRYLIVERGYSEKTKKAYQEDMGDFFHFLKESGNEDPLAVE------YRDVRVYLS 73

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               ++    S+ R ++ ++SF ++L K +I  E+    +   KK+  LPR   EK+   
Sbjct: 74  YLTEREYSRNSISRKMASLRSFYQFLTKHEIVKENPFAYIHLKKKNAKLPRFFYEKEMDA 133

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L  +V        + +  RN A+L +LYG GLR+SE  SLT   I  +   L I GKG+K
Sbjct: 134 LFQSVA-----GDEPLQQRNQALLEVLYGSGLRVSECSSLTLGAIDWESGVLLIHGKGNK 188

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
            R VP     + A+  Y       L    N   ++ LF    G  +     +  + Q+ R
Sbjct: 189 DRYVPFGSYAQAAVKRYLSSGRKQLMEKQNKEHEI-LFVNHLGDGITATGIEYVLNQIIR 247

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L      H LRH+FATHLL+NG D+R++Q +LGH  LSTTQIY +V      D + +
Sbjct: 248 KSSLDSKIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTK----DSLQK 303

Query: 313 IYDQTHP 319
            Y Q HP
Sbjct: 304 NYRQFHP 310


>gi|228998607|ref|ZP_04158194.1| Tyrosine recombinase xerC [Bacillus mycoides Rock3-17]
 gi|229006107|ref|ZP_04163795.1| Tyrosine recombinase xerC [Bacillus mycoides Rock1-4]
 gi|228755183|gb|EEM04540.1| Tyrosine recombinase xerC [Bacillus mycoides Rock1-4]
 gi|228761075|gb|EEM10034.1| Tyrosine recombinase xerC [Bacillus mycoides Rock3-17]
          Length = 302

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 100/313 (31%), Positives = 164/313 (52%), Gaps = 35/313 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R +++  
Sbjct: 11  QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYVDVRLYLTTL 65

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137
             +K+  +S+ R +S ++S  ++L  R+   E N   + +L KK  S+P+ L  ++    
Sbjct: 66  HDEKLARKSVARKVSSLRSLYRFLM-REGYREDNPFALASLPKKDLSIPKFLYVEEL--- 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               L   S     +  R+ A+L L+Y  G+R+SE +SL   +I     T+ + GKG K 
Sbjct: 122 --EKLFEVSDVKTPLGQRDQALLELMYATGIRVSECVSLQLTDIDFSVGTILVTGKGKKQ 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPL-NPGVFQRYI 247
           R VP     + A++ Y +      N   QL          +F   +GKPL + GV  RYI
Sbjct: 180 RYVPFGSYAQDALITYIE------NGRKQLAKKTEEHSQMVFLNAKGKPLTDRGV--RYI 231

Query: 248 -RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
             +L +   L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +  
Sbjct: 232 LNELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER- 290

Query: 307 GDWMMEIYDQTHP 319
              +  +Y + HP
Sbjct: 291 ---LRSVYMKHHP 300


>gi|218778262|ref|YP_002429580.1| tyrosine recombinase XerC [Desulfatibacillum alkenivorans AK-01]
 gi|218759646|gb|ACL02112.1| tyrosine recombinase XerC [Desulfatibacillum alkenivorans AK-01]
          Length = 315

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 152/308 (49%), Gaps = 20/308 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF------YTEEKITIQTIRQLSYTEIR 72
            ++L++L  ER  S  T  +Y  D R+F  ++A        + E   ++ +  L+     
Sbjct: 16  DSFLESLAAERRYSPATCLAYGKDLREFFSYVAESGLQGEISPENADVERVDNLAIRGYL 75

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F+ K+  +     ++ R LS ++SF ++L+KR     +   ++   K+  ++   L   
Sbjct: 76  GFLHKKNEKS----TMARKLSSLRSFYRFLEKRGRVAVNPAQSVVTPKRKKTVAAHLTVD 131

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +A  L+D++L     +     AR+ A+   LY  G+R+SE   L    +     TLR+ G
Sbjct: 132 EAFALLDSIL-----DDSLAGARDRAMFECLYSTGIRVSELAGLNMGRVNFSGKTLRVLG 186

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLR 251
           KGDK RIVP+     + I  Y D    +   N     +F    G  L     +R + ++ 
Sbjct: 187 KGDKERIVPVGAKALEHIKAYRDRLAVEGPKNPDPEAVFLNKNGGRLTTRSIRRILEKIV 246

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R +GL    + H LRH+FATH+L NG DLRS+Q +LGH  +STT  YT+V+     D +M
Sbjct: 247 RDMGLNRPLSPHGLRHTFATHMLDNGADLRSVQELLGHASISTTGRYTHVSI----DRLM 302

Query: 312 EIYDQTHP 319
             YD+ HP
Sbjct: 303 AAYDKAHP 310


>gi|149177593|ref|ZP_01856195.1| integrase/recombinase [Planctomyces maris DSM 8797]
 gi|148843573|gb|EDL57934.1| integrase/recombinase [Planctomyces maris DSM 8797]
          Length = 313

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 107/326 (32%), Positives = 166/326 (50%), Gaps = 26/326 (7%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + S +L     ++L+ L+IER  S LTL+SY  D    + +L   TE +  +    Q+  
Sbjct: 7   VRSIDLHDAIDHFLRYLQIERNSSDLTLKSYAEDLESLVEYL---TEYEGALLPPDQIGI 63

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           +E+R +++     +    ++ R L+ ++SF +Y  +   +  +    +R  +    LP  
Sbjct: 64  SELRRYVAYLHECQYEKTTIARRLACLRSFFRYCCREGYSKTNPAKPLRTPRTGRKLPHF 123

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L   Q  TL     L      + +  R+ AIL  LY  GLR+SE ++L   +   D + +
Sbjct: 124 LTTDQIGTL-----LEAPPANQKMGLRDRAILETLYSAGLRVSELVALNVSDWDQDANII 178

Query: 189 RIQGKGDKIRIVPLLPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
           R+ GKG K RI P+     KA+   LE  +  P     +  L L R      L   +  R
Sbjct: 179 RVLGKGRKERIAPIGSFAAKALTHWLEEREAKPGAHPDSDALFLNR------LKTRLTSR 232

Query: 246 YI-RQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            + R L +YL   GL   T+ HTLRH+FATHLL  G DLRS+Q +LGH  L+TTQIYT+V
Sbjct: 233 SVGRMLEKYLLQTGLDKKTSPHTLRHTFATHLLDGGADLRSVQELLGHKSLTTTQIYTHV 292

Query: 302 NSKNGGDWMMEIYDQTHPSITQKDKK 327
           ++K     ++E Y++ HP   Q+ KK
Sbjct: 293 STKR----LLETYEKAHPH-AQRSKK 313


>gi|228470587|ref|ZP_04055444.1| tyrosine recombinase XerD [Porphyromonas uenonis 60-3]
 gi|228307714|gb|EEK16690.1| tyrosine recombinase XerD [Porphyromonas uenonis 60-3]
          Length = 309

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 93/294 (31%), Positives = 153/294 (52%), Gaps = 18/294 (6%)

Query: 15  LKERQNWLQN----LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           L+ RQ  +Q     L +E+ LS  ++ SY  D  +   ++           ++R+++   
Sbjct: 3   LEPRQQLIQRYKTYLRLEQHLSDNSIDSYLYDVDKLYTYIGDMG------LSLREVTLQH 56

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTESNILNMRNLKKSNSLPRAL 129
           +  F +      I  RSL R LSG+KSF ++L  + +I  +       ++ ++  +P+ L
Sbjct: 57  LNNFAAHLLDLGISMRSLARVLSGVKSFFRFLSLEEEIERDPT-----DMLQTPPIPKKL 111

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            E   L  +D+ LL    E +   +R++AI+ +LY CGLR+SE   LT  ++  D+  L 
Sbjct: 112 PEVLTLAEIDS-LLGAIDEERPEASRDTAIIEVLYSCGLRVSELCGLTYSDVFLDEGYLH 170

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           + GKG K R+VP+ P     +  Y  D C ++        +F   RG+P++       IR
Sbjct: 171 VWGKGRKERLVPMSPKAVSDVQRYLNDPCRYNAKPEYDQYIFISRRGQPISRITVFCLIR 230

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            L    G+    + HTLRHSFATHLL  G DL +IQ ++GH  ++TT+IYT+V+
Sbjct: 231 TLAELAGIHKEISPHTLRHSFATHLLEGGADLHAIQLMMGHESIATTEIYTHVD 284


>gi|269467899|gb|EEZ79638.1| site-specific recombinase XerC [uncultured SUP05 cluster bacterium]
          Length = 292

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 154/295 (52%), Gaps = 20/295 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L++ERG +  T Q+Y  D ++ L F    + E+        LS   +  F+   R Q I 
Sbjct: 12  LKVERGYALNTQQAYARDLQKLLAFTQTQSVERWA-----SLSSENLNLFVMTMRHQNIS 66

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            R+++R LS I+ FL YL  + +   +    +++ K + SLP+ L+ ++ + ++      
Sbjct: 67  GRTIRRHLSSIRGFLSYLVNQGLLEVNCAQGLQSPKVAKSLPKTLDYERLVQML------ 120

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           T   + + + R++A++ +LY CGLR+SE + L  +++   Q  LR+ GKG K+R  PL  
Sbjct: 121 TPKSSAFSELRDAAMVEVLYSCGLRVSELVGLDIEDVDASQGFLRVMGKGSKVRYTPLGE 180

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           S +K+I  Y          +    LF   R + ++    Q  I+     +G+ ++   H 
Sbjct: 181 SAQKSINRYLQKTS-----HTNKALFVNNRQERISTRTVQNIIKNRALSVGIKVNVHPHM 235

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           LRH+ ATH L +  DLRS+Q  LGH  + +TQ+YT+++       + ++YD+ HP
Sbjct: 236 LRHAAATHFLQSSHDLRSVQEFLGHKSIKSTQVYTHLDFLE----LSKVYDKCHP 286


>gi|116747518|ref|YP_844205.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
 gi|189030087|sp|A0LEB8|XERC_SYNFM RecName: Full=Tyrosine recombinase xerC
 gi|116696582|gb|ABK15770.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
          Length = 328

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 97/309 (31%), Positives = 151/309 (48%), Gaps = 24/309 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RR 79
           ++ +L  ERGLS  T+++Y  D  QF   +            + Q+    IR +++   +
Sbjct: 25  FIAHLRHERGLSAETVRAYAGDLDQFREHM--NATAGTADPRLSQVDADAIRGYLAALHK 82

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           T+K   R+  R LS ++SF  +L  R++  E+    +   K    +P  L       L+D
Sbjct: 83  TRKKTSRA--RKLSTLRSFYHFLNDRELVRENPAALVAYPKLGTKIPSFLGVDDVFHLLD 140

Query: 140 NVLLHTSHE-TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           ++    +     W   RN A+   +Y  G+R+SE   +   ++   +  +R+ GKG K R
Sbjct: 141 SLNAGAARAGASWRRCRNWALFECMYSTGVRVSELAGMDESDVDFHEGMVRVLGKGSKER 200

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP--------LFRGIRGKPLNPGVFQRYIRQL 250
           IVP+      A+  Y  +      L+ Q P        LFR  RG+ L      R +R  
Sbjct: 201 IVPVGGKALDAVKLYLRV------LDSQFPEARRMGSALFRNARGRRLTTRSVHRLLRME 254

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            R  GL    + H LRH+FATHLL++G DLR+IQ +LGH  LSTTQ YT+V+     D +
Sbjct: 255 LRRCGLWQHLSPHGLRHTFATHLLNSGADLRAIQEMLGHSNLSTTQRYTHVHV----DQL 310

Query: 311 MEIYDQTHP 319
           M++YD  HP
Sbjct: 311 MKVYDAAHP 319


>gi|294054307|ref|YP_003547965.1| tyrosine recombinase XerD [Coraliomargarita akajimensis DSM 45221]
 gi|293613640|gb|ADE53795.1| tyrosine recombinase XerD [Coraliomargarita akajimensis DSM 45221]
          Length = 312

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 155/306 (50%), Gaps = 16/306 (5%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           + +PE     L++  +++L  LE+ERGL+  T+QSY  D  QF  FL      +  I + 
Sbjct: 7   DTIPE----NLVEAVESFLVWLELERGLATNTVQSYAQDLCQFASFL-----HRAGIGSW 57

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           + +   ++ A+ ++         S  R LS ++ F ++L + +I  +     +   K+  
Sbjct: 58  QAVEAEQVSAWTAELAV-GYARSSQARKLSAVRMFARHLVREQIRADDFTELVSAPKQRR 116

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           SLP  L+ ++   L++   + T H       R+ AIL L Y  GLR+SE   L  Q++  
Sbjct: 117 SLPEVLSREEVDLLLNAPSMSTPH-----GLRDRAILELFYSSGLRVSELCGLPLQSVNL 171

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGV 242
           D+  LR+ GKG K R+VP+  +   A+ +Y  +     +       +F   RG+ ++  +
Sbjct: 172 DEGFLRVYGKGSKERVVPIGAAAVAALKDYLAVGRSQFVQAKTGSEVFLSQRGQAISRKM 231

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               I+Q    +G+      H LRHSFATHLL  G DLR+IQ +LGH  +STTQIYT V 
Sbjct: 232 VWVMIKQHATKVGIKKPIKPHLLRHSFATHLLEGGADLRAIQEMLGHADISTTQIYTAVQ 291

Query: 303 SKNGGD 308
           +    D
Sbjct: 292 ANRLAD 297


>gi|300773591|ref|ZP_07083460.1| tyrosine recombinase XerD [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300759762|gb|EFK56589.1| tyrosine recombinase XerD [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 297

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 166/310 (53%), Gaps = 29/310 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++++ + L++ERGL+  ++++Y  D  +  +F    T +++T+    QLS   ++ F+  
Sbjct: 7   KKDFKRYLQLERGLAPHSIEAYLNDISKLEVFC---TNQQLTVN---QLSVDHLQEFLVW 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             T  I   +  R +SG+K+F  YL+   + T++    +++ + S  +P  LN ++   L
Sbjct: 61  LNTFNISPYTQSRLISGLKAFFGYLQLEGLITKNPAELIQSPRLSRKIPVVLNIEEIDQL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +  + L T+        RN AIL +LYGCGLR+SE ++L   N+      ++++GKG+K 
Sbjct: 121 IGALDLSTTD-----GMRNKAILEILYGCGLRVSELVNLRISNLFLHIDFIKVEGKGNKE 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--------RGKPLNPGVFQRYIRQ 249
           R++P+     K +  Y +       + +Q P+  G         RG  L+  +    I+ 
Sbjct: 176 RLIPIGQHAIKYLNIYLN------EIRVQQPVKAGFEDYVFLNKRGTSLSRVMIFLIIKD 229

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           L    GL    + HT RHSFA+HL+  G DLR++Q +LGH  ++TT+IYT+++     D+
Sbjct: 230 LAAKTGLQKEISPHTFRHSFASHLVEGGADLRAVQDMLGHESITTTEIYTHIDR----DY 285

Query: 310 MMEIYDQTHP 319
           +  +  Q HP
Sbjct: 286 LHAVITQYHP 295


>gi|269103442|ref|ZP_06156139.1| site-specific recombinase XerD [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163340|gb|EEZ41836.1| site-specific recombinase XerD [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 298

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 158/303 (52%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + +ERGLS+ TL SY  D  + ++++    E K+ +++I   S  +++ +    
Sbjct: 9   ERFLDAMWMERGLSENTLASYRNDLTKLMMWM---KEHKLVLESI---SADDLQRYQQWL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R +S I+   +YL + KI  +     + + K    LP+ ++E Q     
Sbjct: 63  FDQDYKQTSRARMVSAIRRVFQYLHREKIRVDDPSAMLISPKLPKRLPKDISEAQV---- 118

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            + LL   +    I+ R+ A+L LLY  GLR++E +SLT +NI   Q  +R+ GKGDK R
Sbjct: 119 -DALLDAPNVDDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVVGKGDKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+  +    I ++     P  L       +F   R + +    F   I+      G+ 
Sbjct: 178 LVPMGENAVDWIEQFLAQGRPMLLGEKSSDVVFPSKRAQQMTRQTFWHRIKHYAVLAGID 237

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             T + H +RH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + ++++Q
Sbjct: 238 ADTLSPHVMRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHEQ 293

Query: 317 THP 319
            HP
Sbjct: 294 HHP 296


>gi|163791334|ref|ZP_02185747.1| site-specific recombinase, phage integrase family protein
           [Carnobacterium sp. AT7]
 gi|159873413|gb|EDP67504.1| site-specific recombinase, phage integrase family protein
           [Carnobacterium sp. AT7]
          Length = 299

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 96/302 (31%), Positives = 153/302 (50%), Gaps = 17/302 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +LQ L  ER  S+LT ++YE D   F  FL    +   +  T++     ++R ++ +   
Sbjct: 10  FLQYLITERHYSELTKKAYEEDITHFESFLNQTGDTNFSNVTLQ-----DVRIYLGELNE 64

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q +   S+ R +S +++F ++L K ++  ++    +   KK+  LP+   EK+   L + 
Sbjct: 65  QGLSRNSISRKISSMRAFYQFLLKNQLVEDNPFSYIHLKKKTLRLPKFFYEKEMDALFEA 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           V        K +D RN AIL +LYG G+R+SE   +  ++I  D S L I GKG+K R V
Sbjct: 125 V-----KGEKPLDFRNEAILEILYGTGIRVSECSGIQLKDIDFDLSVLLIHGKGNKERYV 179

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           P       A+ +Y +     L    +     LF    G P+     +  + Q+ +   L 
Sbjct: 180 PFGHYAAVAMRDYMEKSRTPLMAKYKKSHDLLFVNHHGDPITSTGIEYVLNQVIKKSSLT 239

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRHSFATHLL+NG D+R++Q +LGH  LS+TQIY +V      + + + Y Q 
Sbjct: 240 SDIHPHMLRHSFATHLLNNGADMRTVQELLGHASLSSTQIYAHVTK----ERLQKNYRQF 295

Query: 318 HP 319
           HP
Sbjct: 296 HP 297


>gi|172057038|ref|YP_001813498.1| tyrosine recombinase XerD [Exiguobacterium sibiricum 255-15]
 gi|171989559|gb|ACB60481.1| tyrosine recombinase XerD [Exiguobacterium sibiricum 255-15]
          Length = 294

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 95/301 (31%), Positives = 153/301 (50%), Gaps = 14/301 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + ++  L IER +S  T  +Y  D  Q+L  L     E+  I +  +++   I   I   
Sbjct: 6   ETFIDYLVIERQMSANTAAAYRNDLNQYLTTL-----EQQGISSAEEVTRHHIVLHIESL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
              +    +++RS S I+SF ++L +R+I       ++   K    LP   ++   + L+
Sbjct: 61  LQAQKSRATVRRSTSSIRSFHQFLVERQIVRHDPSRHLDLPKPDKKLPVVWSQTDIVRLL 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D+V+         +  R++A+L LLYG G+R+SE L LT  ++  +   L   GKG+K R
Sbjct: 121 DSVV-----GNDPLVRRDAAMLELLYGTGMRVSELLQLTLSDLQLELGYLSCLGKGNKTR 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           I+P+  +   ++  Y +L    L       +F   RG  L+   F + I++  +  G+  
Sbjct: 176 IIPISQTAIDSVSVYLELARNSLGGRQTDYVFLNSRGDRLSRQGFWKMIKRRAKEAGIEK 235

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             T H LRHSFATHLL NG DLR +Q +LGH  LSTTQ+YT+VN       + ++Y   H
Sbjct: 236 DITPHVLRHSFATHLLENGADLRVVQEMLGHADLSTTQMYTHVNKAR----LHDVYKNHH 291

Query: 319 P 319
           P
Sbjct: 292 P 292


>gi|315658225|ref|ZP_07911097.1| tyrosine recombinase XerD [Staphylococcus lugdunensis M23590]
 gi|315496554|gb|EFU84877.1| tyrosine recombinase XerD [Staphylococcus lugdunensis M23590]
          Length = 295

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 99/304 (32%), Positives = 157/304 (51%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ ++IE+GLS  T+ +Y  D  ++ ++L     E   I+ I  +    I+  +   
Sbjct: 6   EEYLKFIQIEKGLSPNTIGAYRRDLDKYKLYL-----ETRHIEHIDFIDRQTIQECLGYL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q    +SL R +S I+SF ++  + K   +   + +   K    LP  L        +
Sbjct: 61  IDQGSSAKSLARFISTIRSFHQFALREKYAAKDPTVLLETPKYEKKLPDVLE-------I 113

Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           D V  LL     +K    R+  IL L+Y  G+R+SE + +  +NI      +R+ GKGDK
Sbjct: 114 DEVVRLLEAPDLSKKNGYRDRTILELMYATGIRVSELVHIEIENINVIMGFVRVFGKGDK 173

Query: 197 IRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            RI+PL  +V   +  Y  ++ P  L   +   LF  + GKPL+     + I+Q      
Sbjct: 174 ERIIPLGDTVIDYLKTYMKEIRPQLLKSTVTNVLFLNMHGKPLSRQGIWKMIKQYGIKSN 233

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + +IY+
Sbjct: 234 ITKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKAQ----IRQIYN 289

Query: 316 QTHP 319
           Q HP
Sbjct: 290 QYHP 293


>gi|114319227|ref|YP_740910.1| tyrosine recombinase XerC [Alkalilimnicola ehrlichii MLHE-1]
 gi|114225621|gb|ABI55420.1| tyrosine recombinase XerC [Alkalilimnicola ehrlichii MLHE-1]
          Length = 304

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 158/301 (52%), Gaps = 15/301 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L +L  ERGLS  TLQ+Y+ D  +F  + A   E  +  +    +S  +IR F + R
Sbjct: 9   RHFLHHLRYERGLSPHTLQAYQRDLTRFHHWCA---ENGLADRDA--VSAHDIRRFAAAR 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q +   S++R+LS ++S  +YL +    T +    +   ++   LP  L+  +A  L+
Sbjct: 64  HRQGLAPGSVQRTLSSLRSLFRYLVREGRLTGNPAEGVAAPRRPRRLPGVLSPDEAARLL 123

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +      S E   +  R+ A+  L+Y  GLR++EA+ L    +   +  + + GKG K R
Sbjct: 124 EG-----SPEDDPLALRDRALYELIYSSGLRLAEAVGLDLGRLDLTEGLVEVVGKGAKTR 178

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            VP+    R+A+  +  + P  L    +  +F   RG  L+    Q  + +L    G+  
Sbjct: 179 RVPVGGKAREALQAWLAVRPA-LAGADEPAVFVSQRGGRLSARSVQARLARLATLSGVGR 237

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRHSFA+HLL + GDLR++Q +LGH  ++TTQ+YT+++ ++    +  +YDQ H
Sbjct: 238 PVHPHMLRHSFASHLLESSGDLRAVQELLGHADIATTQVYTHLDFQH----LARVYDQAH 293

Query: 319 P 319
           P
Sbjct: 294 P 294


>gi|222112165|ref|YP_002554429.1| tyrosine recombinase xerc [Acidovorax ebreus TPSY]
 gi|221731609|gb|ACM34429.1| tyrosine recombinase XerC [Acidovorax ebreus TPSY]
          Length = 323

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 157/336 (46%), Gaps = 30/336 (8%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N  P  V+  L  E   +L+++ +E+ L+  TL  Y  D ++     A      + +  +
Sbjct: 2   NGTP--VALHLPPEALQYLEHVRVEKRLAARTLTLYTLDLQRLAAMAA-----GVDLPLL 54

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           R L+   IR F+++        R +   LSG + F  +  ++ +   + + ++R  K   
Sbjct: 55  R-LTSAHIRRFVAQMHAGGRSGRGIALILSGWRGFYTWAARQGLVPHNPVQDVRAPKAPK 113

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNI 181
            LP+AL   +A+ L ++     +    W++AR++AI+ LLYGCGLR+ E   L + P   
Sbjct: 114 PLPKALPVDEAVRLAEH---QETGADPWLEARDAAIVELLYGCGLRVGELVGLDVAPSPA 170

Query: 182 MDDQS---------TLRIQGKGDKIRIVPL--LPSVRKAILEYYDLCPFDLNLNIQL--P 228
              Q             + GKG K R VP+    +            PF      +L   
Sbjct: 171 AHQQGRGWVDLQAGEAHVFGKGSKRRSVPVGRAAAAALQAWLAQRALPFGAAGAARLEPA 230

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LF G RG  L        +RQ  +  GL      H LRHSFA+HLL + GDLR++Q +LG
Sbjct: 231 LFIGRRGARLTAQSVWLRLRQRSQVAGLTTPVHPHMLRHSFASHLLQSSGDLRAVQELLG 290

Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           H  ++TTQ+YT ++ ++    +  +YD  HP   +K
Sbjct: 291 HANITTTQVYTRLDFQH----LARVYDAAHPRARRK 322


>gi|262278120|ref|ZP_06055905.1| site-specific recombinase XerC [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258471|gb|EEY77204.1| site-specific recombinase XerC [Acinetobacter calcoaceticus
           RUH2202]
          Length = 310

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 167/306 (54%), Gaps = 24/306 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+  +I+   S+ T+ +YE D + FL F      +      +R +  +++R ++++R  
Sbjct: 15  WLKERKIQ-NQSEHTITAYERDVKSFLEFCDLKQID------LRNVEASDLREYLAQRVE 67

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           Q ++   S++R L+ I+ F+K+ ++ K    +   + +  ++   LP  ++ +    ++D
Sbjct: 68  QDQLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILD 127

Query: 140 NVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             +     + + W+  R+ A+L LLY  GLR++E   LT ++I  ++  +RI GKG+K R
Sbjct: 128 QPMPEKPVDQQLWL--RDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTR 185

Query: 199 IVPLLPSVRKAILEYYDLCP-----FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           IVP     ++++L +  +       FD N  +    F   RG  L P   ++ ++   + 
Sbjct: 186 IVPFGKKAKESLLNWLKIYKIWKGHFDQNAFV----FISQRGGVLTPRQIEKRVKLQAQR 241

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+ +    H LRH FA+H+LS+ GDLRS+Q +LGH  LSTTQIYT+++     D + ++
Sbjct: 242 AGVNVDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHLAQV 297

Query: 314 YDQTHP 319
           YD+ HP
Sbjct: 298 YDRAHP 303


>gi|9622620|gb|AAF89876.1| putative site-specific recombinase XerD [Staphylococcus aureus]
          Length = 295

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 102/304 (33%), Positives = 161/304 (52%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTI-RQLSYTEIRAFIS 76
           + +L+ ++IE+GLS  T+ +Y  D +++  ++   TE  I+ I  I RQL    +   I 
Sbjct: 6   EEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYM---TEHHISHIDFIDRQLIQECLGHLID 62

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           + ++ K    S+ R +S I+SF ++  + K   +   + + + K    LP  LN  + L 
Sbjct: 63  QGQSAK----SIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLA 118

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L     L T    K    R+  +L LLY  G+R+SE + L  +N+      +R+ GKGDK
Sbjct: 119 L-----LETPDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDK 173

Query: 197 IRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            RIVPL  +V + +  Y + + P  L   +   LF  + GKPL+     + I+Q      
Sbjct: 174 ERIVPLGDAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKAN 233

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y 
Sbjct: 234 IKKKLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IKKMYY 289

Query: 316 QTHP 319
             HP
Sbjct: 290 PFHP 293


>gi|241896295|ref|ZP_04783591.1| site-specific recombinase XerD [Weissella paramesenteroides ATCC
           33313]
 gi|241870456|gb|EER74207.1| site-specific recombinase XerD [Weissella paramesenteroides ATCC
           33313]
          Length = 302

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 99/314 (31%), Positives = 157/314 (50%), Gaps = 41/314 (13%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L +ERGLS  T  SY+ D  QF  +L    E+  T+  + + +   I AF+ +  
Sbjct: 14  DYLHYLTVERGLSANTKHSYQQDLVQFFQYLI--AEKYDTLTVVDRFT---IMAFLGQLE 68

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +     ++ R +S ++ F ++++   + T + +  + + KK+  LP  L  ++      
Sbjct: 69  QKGKSRNTIIRMVSTLRKFFEFVQMNNLITSNPMDQVDSPKKAQHLPAVLTLEEV----- 123

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL        +  RN  IL ++Y  GLR+SE ++L   N+  D   ++  GKGDK RI
Sbjct: 124 EALLQVPDTNTPLGLRNRTILEVMYATGLRVSELVNLRLDNLHLDLGLIQTIGKGDKERI 183

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF--------------QR 245
           VP+   V    LE Y        LN   PL     GK  +P V                +
Sbjct: 184 VPI-GDVAVKWLENY--------LNNSRPLL----GKQQDPHVIFLNDHGHQLTRQGVWK 230

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            I+Q  +  G+    + HTLRHSFATH+L NG DLR +Q +LGH  +STTQIYT++++K 
Sbjct: 231 LIKQWVKQAGITKDVSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISNKR 290

Query: 306 GGDWMMEIYDQTHP 319
               + E+Y++ HP
Sbjct: 291 ----LTEVYEKAHP 300


>gi|169350488|ref|ZP_02867426.1| hypothetical protein CLOSPI_01256 [Clostridium spiroforme DSM 1552]
 gi|169292808|gb|EDS74941.1| hypothetical protein CLOSPI_01256 [Clostridium spiroforme DSM 1552]
          Length = 302

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 102/315 (32%), Positives = 165/315 (52%), Gaps = 17/315 (5%)

Query: 14  LLK-ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           LLK E + + Q L +E+GLSK T+ +Y  D  QF      Y +    I  I  ++   +R
Sbjct: 2   LLKDEIEEYKQYLIVEKGLSKNTINAYIKDLNQF----ESYLDHNFQITKINDIAKEHVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK-SNSLPRALNE 131
            +I K  ++KI   S+ R L  ++ F  +  K  +  ++NI++  +L K    LP  L++
Sbjct: 58  LYI-KELSKKISATSINRKLVSLRMFFTFATKETVI-DTNIMSDFDLPKIDKKLPIVLSK 115

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           ++   L+D++ ++       I +RN  +  L+Y  GLR+SE  +LT  ++  +   L+I 
Sbjct: 116 EEMQELLDSIEIND-----HISSRNRCMFELMYATGLRVSELTNLTISSLNINMGYLKII 170

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKGDK RIVPL    R  + +Y      +        LF    G  L+       ++Q+ 
Sbjct: 171 GKGDKERIVPLSNMARNILNDYLKHYRNEFIKKDSPLLFFNNHGNKLSREECYIILKQII 230

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               +    + HT+RHSFATHLL NG DLRSIQ +LGH  +STT IYT+++++     + 
Sbjct: 231 ERTTINKKISPHTIRHSFATHLLENGADLRSIQELLGHSNISTTTIYTHISNQK----IK 286

Query: 312 EIYDQTHPSITQKDK 326
           + Y   HP + +K+K
Sbjct: 287 KEYQLFHPRVKKKNK 301


>gi|323489572|ref|ZP_08094799.1| tyrosine recombinase xerC [Planococcus donghaensis MPA1U2]
 gi|323396703|gb|EGA89522.1| tyrosine recombinase xerC [Planococcus donghaensis MPA1U2]
          Length = 297

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 155/303 (51%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  +++E+  S+ T+  YE D   F +FL         +  IR++ Y   R +++K 
Sbjct: 8   ESFMSYIQLEKNYSEHTVHHYEHDLADFFLFL-----NAEGVPDIREVEYIHARNYVTKL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
              K+   ++ R +S I+SF +Y  +     E+   ++ + KK   LP+   E++   L 
Sbjct: 63  YDAKLSRTTVSRKISAIRSFFRYANREYGLDEAAFRSLYHPKKEERLPQFFYEEELAQLF 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            +VL         +  RN+A+L LLY  G+R+SE +S+   ++      +++ GKG K R
Sbjct: 123 KSVL-----GDDKLSIRNTALLELLYATGMRVSECVSIRLTDLDQTMQIVKVMGKGRKER 177

Query: 199 IVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            +P     + A LE+Y  D  P  +       LF   RG+ +     +  + +  +   +
Sbjct: 178 YIPYGQFAQDA-LEHYLEDARPKLMKKQDHDYLFVNSRGEAVTDRGIRHILSECMKKASV 236

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S   H +RH+FATHL++NG D+R++Q +LGH  LS+TQ+YT+V  ++    +   Y  
Sbjct: 237 NSSIYPHMIRHTFATHLINNGADIRTVQELLGHSHLSSTQVYTHVTKEH----LRNTYLN 292

Query: 317 THP 319
           +HP
Sbjct: 293 SHP 295


>gi|283782472|ref|YP_003373227.1| tyrosine recombinase XerC [Pirellula staleyi DSM 6068]
 gi|283440925|gb|ADB19367.1| tyrosine recombinase XerC [Pirellula staleyi DSM 6068]
          Length = 323

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 156/318 (49%), Gaps = 27/318 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFL--AFYTEEKITIQTIRQLSYTEIRAFISK 77
            +L+ L +ERG ++LT +SY  D      +L  A+  E K +     +++  ++R ++S 
Sbjct: 7   QFLRYLVVERGAAELTSKSYREDLTSLADYLTQAYGREPKPS-----EITPLDLRGYVSA 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    S+ R L+ +++F K+ ++  +   +    +RN +K   LP  L   +    
Sbjct: 62  LHEAGYAKTSIARRLASLRTFYKFAQREGMADSNPAKPLRNPRKDRKLPHFLAGDEL--- 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               LL           R+ A+L  LY  GLR+SE + +  +++  D+  +RI+GKG K 
Sbjct: 119 --GKLLEAPPADDPAGLRDRAMLETLYSAGLRVSELVGMNDEDLDLDEGVVRIRGKGSKE 176

Query: 198 RIVPLLPSVRKAI---LEYYDLCPFDLNLNIQ--------LPLFRGIRGKPLNPGVFQRY 246
           R+ PL     +AI   L +  L    ++   +         P+F    GK L      R 
Sbjct: 177 RLAPLGSFALRAIKKWLAHRKLASISVSSTRKSASKAGHGTPVFTNKFGKRLTTRSVARM 236

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           + +  +  GL L TT HTLRH+FATHLL  G D+RS+Q +LGH  L TTQIYT+V++   
Sbjct: 237 LEKYLKLTGLDLRTTPHTLRHTFATHLLDRGADIRSVQELLGHKSLVTTQIYTHVSTA-- 294

Query: 307 GDWMMEIYDQTHPSITQK 324
              +  +Y++ HP    K
Sbjct: 295 --ALKAVYERAHPRARNK 310


>gi|257874138|ref|ZP_05653791.1| site-specific recombinase [Enterococcus casseliflavus EC10]
 gi|257808302|gb|EEV37124.1| site-specific recombinase [Enterococcus casseliflavus EC10]
          Length = 299

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 153/307 (49%), Gaps = 21/307 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY-TEEKITIQTIRQLSYTEIRAFIS 76
           ++ + + L +ERG S+ T ++Y+ D   F  FL     E+ + ++      Y ++R ++S
Sbjct: 7   QEEFFRYLIVERGYSEKTKKAYQEDMNDFFHFLKESGNEDPLAVE------YRDVRVYLS 60

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               +     S+ R ++ ++SF ++L K +I  E+    +   KK+  LPR   EK+   
Sbjct: 61  YLTERGYSRNSISRKMASLRSFYQFLTKHEIVKENPFAYIHLKKKNAKLPRFFYEKEMDA 120

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L  +V        + +  RN A+L +LYG GLR+SE  SLT   I  +   L I GKG+K
Sbjct: 121 LFQSVA-----GDEPLQQRNQALLEVLYGSGLRVSECSSLTLGAIDWESGVLLIHGKGNK 175

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
            R VP     + A+  Y       L    N   ++ LF    G  +     +  + Q+ R
Sbjct: 176 DRYVPFGSYAQAAVKRYLSSGRKQLMEKQNKEHEV-LFVNHLGDGITATGIEYVLNQIIR 234

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L      H LRH+FATHLL+NG D+R++Q +LGH  LSTTQIY +V      D + +
Sbjct: 235 KSSLDSKIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTK----DSLQK 290

Query: 313 IYDQTHP 319
            Y Q HP
Sbjct: 291 NYRQFHP 297


>gi|254467807|ref|ZP_05081213.1| tyrosine recombinase XerC [beta proteobacterium KB13]
 gi|207086617|gb|EDZ63900.1| tyrosine recombinase XerC [beta proteobacterium KB13]
          Length = 295

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 103/319 (32%), Positives = 171/319 (53%), Gaps = 30/319 (9%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S ELL +  N+++    E+ LS+LT+++Y+ D  + ++      ++K+T     + +  
Sbjct: 1   MSNELLDQFLNYIK---FEKRLSELTIKNYQNDINRLILI----NDKKLT-----EFNSE 48

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +IR  +SK     +  +SL R LS  +S   +  K ++        ++  K    LP+ L
Sbjct: 49  DIRLSLSKLHASGLSGKSLSRILSSWRSCFLFFNKSQLMKYDPTSGIKAPKSQKKLPQTL 108

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  Q   L++        +T +ID R+ AIL   Y  GLR+SE +++   +I  ++ TL+
Sbjct: 109 SIDQVFNLIN------IPQTNFIDTRDRAILEFFYSSGLRLSELVNIHLSDIDTNEQTLK 162

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLP---LFRGIRGKPLNPGVFQR 245
           + GKG+K RIVPL    RKAI E  DL     N LN  +    LF   +GK L     Q 
Sbjct: 163 VLGKGNKFRIVPL---GRKAI-EALDLWILQRNKLNKLVDDEFLFLNQQGKKLTARAIQY 218

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            ++   +   +P +   H LRHSFA+H+L +  DLR++Q +LGH  +STTQIYT+++ ++
Sbjct: 219 RLKFWAQKNNIPENIHPHLLRHSFASHVLQSSQDLRAVQELLGHSNISTTQIYTHLDFQH 278

Query: 306 GGDWMMEIYDQTHPSITQK 324
               + +IYDQ HP   +K
Sbjct: 279 ----LSKIYDQAHPRSKKK 293


>gi|320104451|ref|YP_004180042.1| tyrosine recombinase XerD subunit [Isosphaera pallida ATCC 43644]
 gi|319751733|gb|ADV63493.1| tyrosine recombinase XerD subunit [Isosphaera pallida ATCC 43644]
          Length = 325

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 145/301 (48%), Gaps = 13/301 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L  E  LS  TL +Y  D    + F  +    +   + I  L   ++ A++    
Sbjct: 35  GFLHYLMTECRLSPGTLAAYRGD---LVKFTRWRAAREAVPRPIAALQVGDLEAYVDYLH 91

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +   ++ R LS + SF +YL      +E+ +  +        LP  +  +       
Sbjct: 92  GLGLAPATVCRHLSSLSSFFRYLAIEGRLSENRVELVTAPSLWERLPTVIGPQAV----- 146

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           + LL    E  W   R+ AIL  LY  G R+SE   LT +++  D ++ R+ GKGD+ RI
Sbjct: 147 SQLLEAPAEWGWKGRRDRAILETLYATGCRVSEVAGLTIRDLDLDSASARVVGKGDRERI 206

Query: 200 VPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VPL    ++A+  + +            + +F    G+PL+ G   R ++   R  GL  
Sbjct: 207 VPLGQPAQRALRRWLEERPRRVQRRPQVVAVFVSRTGRPLDRGSIWRIVKASARLAGLSA 266

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + + HTLRHSFATHLL+ G DLR++Q +LGH  +STTQIYT V        ++E++ + H
Sbjct: 267 TVSPHTLRHSFATHLLAGGADLRAVQELLGHASISTTQIYTRVEVSR----LLEVHAKFH 322

Query: 319 P 319
           P
Sbjct: 323 P 323


>gi|86142675|ref|ZP_01061114.1| putative tyrosine recombinase [Leeuwenhoekiella blandensis MED217]
 gi|85830707|gb|EAQ49165.1| putative tyrosine recombinase [Leeuwenhoekiella blandensis MED217]
          Length = 298

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 95/289 (32%), Positives = 150/289 (51%), Gaps = 18/289 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L+IERGLS+ T+ +Y  D  + + ++  ++ E   I   ++    +++ FI     +++ 
Sbjct: 14  LKIERGLSENTVVNYGLDISKLIKWIDEHSVEASPISITKE----QLQDFIYTY-AKELT 68

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R +SG+K + +YL       ++    +   K    LP  L+E +   ++D V L 
Sbjct: 69  ASSQARLISGLKGYFEYLVFEDYRKDNPTDLIEAPKVGRKLPDTLSEDEVNRIIDAVDL- 127

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
               ++    RN AIL  LYGCGLR+SE L+L   ++  D+  + + GKGDK R VP+ P
Sbjct: 128 ----SRPQGERNRAILETLYGCGLRVSEVLNLKLSDLFFDEGYILVTGKGDKQRFVPIAP 183

Query: 205 SVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
             +K I  Y D       P     NI   LF   RG  L   +    ++Q  +  G+   
Sbjct: 184 ITQKYIEIYRDQIRIHEAPKPEFKNI---LFLNRRGAQLTRAMIFTLVKQHTQKAGIKKK 240

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            + HT RHSFATHLL NG DLR+IQ +LGH  ++TT++Y +V+  +  D
Sbjct: 241 ISPHTFRHSFATHLLQNGADLRAIQQMLGHESITTTEVYMHVDRSHLAD 289


>gi|227496090|ref|ZP_03926396.1| tyrosine recombinase [Actinomyces urogenitalis DSM 15434]
 gi|226834324|gb|EEH66707.1| tyrosine recombinase [Actinomyces urogenitalis DSM 15434]
          Length = 316

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 99/315 (31%), Positives = 158/315 (50%), Gaps = 22/315 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L + R+ +L +L +ERGLS  TL +YE D  ++  FL         +Q +  ++  ++ A
Sbjct: 11  LERARRGYLAHLRVERGLSPNTLAAYERDLTRYCRFLLARG-----VQDLAAVTEADVAA 65

Query: 74  FISKRRTQKIGDRSLK-----RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           F+   RT   G R+L      R+++ ++ + K+L     T       +   +    LP+A
Sbjct: 66  FLEAIRTGDDGGRALAASSASRTVTAVRGWHKFLLDEGNTDVDPSAAVHPPQVGRRLPKA 125

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+ ++   L++      S  +     R+ A+L LLY  G RISEA+ L   ++  +   +
Sbjct: 126 LSVEEVQALLEAASTDDSPRSL----RDRALLELLYATGARISEAVGLVIDDLDRESGCI 181

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRY 246
           R+ GKG K RIVP+      A+  Y     P        +P +F    G+PL+       
Sbjct: 182 RLFGKGRKERIVPVGQYAWDALDAYLVQARPVLAAKGRGVPEVFLNTLGRPLSRQSAWGV 241

Query: 247 IRQL--RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +RQ   R  LG     + HTLRHSFATHLL+ G D+R +Q +LGH  ++TTQIYT V  +
Sbjct: 242 LRQASARAGLGADKHVSPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTKVTVE 301

Query: 305 NGGDWMMEIYDQTHP 319
           +    + E+Y  +HP
Sbjct: 302 H----LREVYATSHP 312


>gi|167756895|ref|ZP_02429022.1| hypothetical protein CLORAM_02444 [Clostridium ramosum DSM 1402]
 gi|167703070|gb|EDS17649.1| hypothetical protein CLORAM_02444 [Clostridium ramosum DSM 1402]
          Length = 302

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 95/302 (31%), Positives = 158/302 (52%), Gaps = 18/302 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L+ +R  +  T++SY+   RQ   F  F  EE  +I     +SY  +R +++K   
Sbjct: 12  YLDYLQYQRHYADKTIESYK---RQIDHFKQFLIEE--SIDDYNDVSYAMLRGYLTKLYE 66

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   ++   LS ++SF  YL K ++  ++  L + + K +   P  L  ++ L L+D+
Sbjct: 67  KNLSKTTINHKLSALRSFFNYLLKEELINDNPFLLIESQKVAKRNPDFLFPEEILGLLDS 126

Query: 141 VLLHTSHETKW-IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           +      ETK  +  RN A++ L+Y  GLR SE ++L   NI  +Q  L I GKG+K R 
Sbjct: 127 I------ETKDDLGIRNKAMMELMYASGLRCSEVVNLQLSNIDFNQMVLFIHGKGNKDRY 180

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGLP 257
           VP      + +++Y      +L +  +   F  +   G PL     +  + ++ R     
Sbjct: 181 VPFHDYAGEWLIKYIQEARENLMIKNEGHNFVFVNKFGNPLTNRGVENIVDRIMRLYDST 240

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                HT+RHSFATHLL+ G D+R++Q +LGH  LSTTQIYT+++     D + E+Y + 
Sbjct: 241 KKIHPHTIRHSFATHLLNAGADIRTVQELLGHENLSTTQIYTHISR----DHLKEVYLKA 296

Query: 318 HP 319
           HP
Sbjct: 297 HP 298


>gi|254483258|ref|ZP_05096490.1| tyrosine recombinase XerC [marine gamma proteobacterium HTCC2148]
 gi|214036481|gb|EEB77156.1| tyrosine recombinase XerC [marine gamma proteobacterium HTCC2148]
          Length = 304

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 162/308 (52%), Gaps = 19/308 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +  KE  ++L+++   R LS  TL++Y+ D    L  L  Y E+ I  QT  +L   +IR
Sbjct: 7   DACKEFIDYLRDV---RQLSPHTLENYQRD----LASLQRYGEQ-IKKQTAAELDEADIR 58

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           A++S+   + +   S++RSLS  +SF  YL +      +    ++  +K   LP+ L+  
Sbjct: 59  AWVSQLHRRGLAGSSIQRSLSAARSFFNYLSRINGHPRNPAAAVQAPRKPRKLPKTLDAD 118

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q    VD  L+        +  R+ A+  L Y  GLR++E  S+   +I      L + G
Sbjct: 119 Q----VDRYLMFEDDSPTAL--RDHAMAELFYSSGLRLAELNSVNINDIDRGSRLLTVTG 172

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG+K R VP+  +  KAI ++  + P    + +  + LF   RG+ ++    Q  ++   
Sbjct: 173 KGNKTRTVPVGSAALKAIDKWLTVRPDIAADEDASVALFTSNRGQRISVRNIQARLKLQG 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R  G+      H LRHSFA+H+L + GDLR++Q +LGH  +STTQIYT+++ ++    + 
Sbjct: 233 RKAGMRQDVHPHMLRHSFASHMLESSGDLRAVQELLGHANISTTQIYTHLDFQH----LA 288

Query: 312 EIYDQTHP 319
           ++YD  HP
Sbjct: 289 KVYDAAHP 296


>gi|223938389|ref|ZP_03630283.1| integrase family protein [bacterium Ellin514]
 gi|223892958|gb|EEF59425.1| integrase family protein [bacterium Ellin514]
          Length = 337

 Score =  136 bits (342), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 103/336 (30%), Positives = 165/336 (49%), Gaps = 28/336 (8%)

Query: 2   EGNNLPEI--VSFELLKERQNW----LQNLEIERGLSKLTLQSYECDTRQFLI-FLAFYT 54
           EG+  PE   VS       + W    L +L  +RG S  T ++Y    RQ L+ F  ++ 
Sbjct: 10  EGDPTPEPAEVSGTNSASEEKWIKTFLHHLAADRGASIYTQRNY----RQTLVEFYGWHR 65

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
           +E+        L   + R ++       +   +++     +++F K+L +  + + S I 
Sbjct: 66  KERGVEPAWENLHRDDFRGYLRFLGRGNLSRAAIQLRFCALRTFYKFLIRHGVVSASPIK 125

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVL--LHTSHE-------TKWIDARNSAILYLLYG 165
           N+   K    LP+ L  +Q + L+   L  L T  +       +  +  R+ AIL  +Y 
Sbjct: 126 NVSLPKMEKRLPKFLTAQQMVELLGAPLKPLATPKKKGPGRPISATVCYRDVAILETIYS 185

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           CGLRISE   LT Q+I  ++  +R++GKG K R VP+      AI  Y+     + +   
Sbjct: 186 CGLRISELCGLTAQDIDWNEQLVRVRGKGKKERQVPIGEPALTAIRNYWST--LEQSPGG 243

Query: 226 QLPLFRGI--RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             P+F G   +   L+P V Q+ +++     GL  S T H LRHS+ATH+L  G DLRS+
Sbjct: 244 GSPVFLGETEKAAALSPRVLQQRLKKYLALAGLDPSLTPHKLRHSYATHMLDAGADLRSV 303

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           Q +LGH  L TTQ+YT+V+++     +   YD  HP
Sbjct: 304 QELLGHAHLITTQVYTHVSTER----LKRAYDSAHP 335


>gi|254284183|ref|ZP_04959151.1| tyrosine recombinase XerD [gamma proteobacterium NOR51-B]
 gi|219680386|gb|EED36735.1| tyrosine recombinase XerD [gamma proteobacterium NOR51-B]
          Length = 299

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 160/306 (52%), Gaps = 19/306 (6%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E   ++  L IERGLS  TL +Y  D RQF  FL     ++  I +++      ++ F++
Sbjct: 8   EIDQFIDALWIERGLSANTLAAYRRDLRQFADFL-----DERGIASLKAADAGALQGFLA 62

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            R      +RS  R LS ++ F +Y L++ +I  +     + + +   SLP++++E    
Sbjct: 63  SRLKSGHSNRSAARFLSTLRGFYRYHLRENRIDRDPTQF-IDSPRLGRSLPKSISEAD-- 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
             V+ +L   + E   ID R+  +L LLY CGLR++E   L    +  +Q  +R+ GKGD
Sbjct: 120 --VERLLAAPNVEDP-IDFRDRTMLELLYACGLRVTELTGLQVSQLSLNQGVVRVVGKGD 176

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R++P+       + ++    P  + L  ++   LF   RG  +    F   I+   + 
Sbjct: 177 KERLIPIGEEALSWVQQFL-AGPRQVLLKERMSEVLFPSNRGGQMTRQTFWYRIKLHAKR 235

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    + HTLRH+FATHL+++G DLR +Q +LGH  L+TTQIYT+V        M ++
Sbjct: 236 AGIEAHLSPHTLRHAFATHLINHGADLRVVQMLLGHSDLTTTQIYTHVARHR----MQQL 291

Query: 314 YDQTHP 319
           + Q HP
Sbjct: 292 HAQHHP 297


>gi|325273831|ref|ZP_08140016.1| site-specific tyrosine recombinase XerD [Pseudomonas sp. TJI-51]
 gi|324101037|gb|EGB98698.1| site-specific tyrosine recombinase XerD [Pseudomonas sp. TJI-51]
          Length = 298

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 99/309 (32%), Positives = 149/309 (48%), Gaps = 32/309 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKR 78
            +L  L +E+GLS  T  SY  D     +F  +  E  + +    R L    I   ++ R
Sbjct: 11  QFLDALWLEKGLSDNTRVSYRSD---LALFNGWLHERSVALPDAGRDL----ILDHLAWR 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q    RS  R +SG++ F +YL + K+      L +   +    LP++L+E       
Sbjct: 64  LEQGYKPRSTARFISGLRGFFRYLLREKLVAIDPTLQVDMPQLGKPLPKSLSEADV---- 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL      + I  R+ A+L +LY CGLR++E +SL    +   Q  LR+ GKG K R
Sbjct: 120 -EALLQAPDLGEAIGQRDRAMLEVLYACGLRVTELVSLALDQVNLRQGVLRVMGKGSKER 178

Query: 199 IVPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +VP+           +R    E  +  P D+       LF  +RG+ +    F   I+  
Sbjct: 179 LVPMGEEAVVWLERYLRSGRAELLNGRPSDV-------LFPSLRGEQMTRQTFWHRIKHH 231

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            R  G+    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        +
Sbjct: 232 ARVAGIDKPLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR----L 287

Query: 311 MEIYDQTHP 319
            +++ Q HP
Sbjct: 288 QQLHAQHHP 296


>gi|253566424|ref|ZP_04843877.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|251944596|gb|EES85071.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|301165207|emb|CBW24778.1| putative tyrosine recombinase [Bacteroides fragilis 638R]
          Length = 317

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 94/285 (32%), Positives = 149/285 (52%), Gaps = 12/285 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + Q L++E+ LSK TL++Y  D  + L FL+    E      I ++S T+++ F +  
Sbjct: 18  KKYQQYLKLEKSLSKNTLEAYLTDLEKLLSFLSAEGVE------ILEVSLTDLQRFAAGL 71

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               I  RS  R +SGIKSF  +L             +   K    LP  L  ++   ++
Sbjct: 72  HDIGIHARSQARIISGIKSFFHFLIIADYIEADPSELLEGPKIGFKLPEVLTVEEIDRII 131

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             + L     +K    RN AIL  LY CGLR+SE   L   ++  D+  ++++GKG K R
Sbjct: 132 STIDL-----SKNEGQRNRAILETLYSCGLRVSELTGLKLSDLYFDEGFIKVEGKGSKQR 186

Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+ P   + I  Y+ D    ++  + +  LF   RG  L+  +    I++L    G+ 
Sbjct: 187 LVPISPKAIQEIKLYFLDRNRINIKKDHEDYLFLSRRGTHLSRIMIFHLIKELADMAGIT 246

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            + + HT RHSFATHLL  G +LR+IQ +LGH  +STT+IYT+++
Sbjct: 247 QNISPHTFRHSFATHLLEGGANLRAIQCMLGHESISTTEIYTHID 291


>gi|33599180|ref|NP_886740.1| site-specific tyrosine recombinase XerC [Bordetella bronchiseptica
           RB50]
 gi|33575226|emb|CAE30689.1| putative integrase/recombinase [Bordetella bronchiseptica RB50]
          Length = 326

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 155/323 (47%), Gaps = 27/323 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +WL++L+  R  S  TL  Y  D RQ                 + +++   IR F+++  
Sbjct: 16  DWLRHLQAHRRYSAHTLDGYTRDLRQLA------QLAAAAGLPLERVANGHIRHFVARLH 69

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q +G RSL R+L+  + F ++         +    +R  K    LP+AL+ +Q   L+D
Sbjct: 70  AQGLGPRSLARALAAWRGFYQWWAPAAGLPGNPATGVRAPKAPRGLPKALSVEQTQVLLD 129

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL------TPQN-----IMDDQSTL 188
           +     + E   +  R+ A+  LLY  GLR++E +SL      TP+      +  D + +
Sbjct: 130 HAPARLATEPAAL--RDHAMFELLYSSGLRLAELVSLDLHYERTPEYESRSWLNRDDAEV 187

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL----FRGIRGKPLNPGVFQ 244
            + GKG K R VP+  S   A+ ++    P               F G RG+ + P V Q
Sbjct: 188 IVVGKGGKRRSVPVGQSALAALDKWLQARPQLAAAGAGAQDAAALFVGTRGRRIAPRVVQ 247

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             + +L +  GLP     H LRHSFA+H+L +  DLR++Q +LGH  +STTQ+YT ++ +
Sbjct: 248 LQLARLAQAAGLPAHVHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQVYTRLDFQ 307

Query: 305 NGGDWMMEIYDQTHPSITQKDKK 327
           +    +   YDQ HP   +K  +
Sbjct: 308 H----LARAYDQAHPRAGRKTSR 326


>gi|53715763|ref|YP_101755.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60683694|ref|YP_213838.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343]
 gi|265767295|ref|ZP_06094961.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_16]
 gi|52218628|dbj|BAD51221.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60495128|emb|CAH09949.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343]
 gi|263252600|gb|EEZ24112.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_16]
          Length = 317

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 94/285 (32%), Positives = 149/285 (52%), Gaps = 12/285 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + Q L++E+ LSK TL++Y  D  + L FL+    E      I ++S T+++ F +  
Sbjct: 18  KKYQQYLKLEKSLSKNTLEAYLTDLEKLLSFLSAEGVE------ILEVSLTDLQRFAAGL 71

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               I  RS  R +SGIKSF  +L             +   K    LP  L  ++   ++
Sbjct: 72  HDIGIHARSQARIISGIKSFFHFLIIADYIEADPSELLEGPKIGFKLPEVLTVEEIDRII 131

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             + L     +K    RN AIL  LY CGLR+SE   L   ++  D+  ++++GKG K R
Sbjct: 132 STIDL-----SKNEGQRNRAILETLYSCGLRVSELTGLKLSDLYFDEGFIKVEGKGSKQR 186

Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+ P   + I  Y+ D    ++  + +  LF   RG  L+  +    I++L    G+ 
Sbjct: 187 LVPISPKAIQEIKLYFLDRNRINIKKDHEDYLFLSRRGTHLSRIMIFHLIKELADMAGIT 246

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            + + HT RHSFATHLL  G +LR+IQ +LGH  +STT+IYT+++
Sbjct: 247 KNISPHTFRHSFATHLLEGGANLRAIQCMLGHESISTTEIYTHID 291


>gi|297617131|ref|YP_003702290.1| tyrosine recombinase XerC [Syntrophothermus lipocalidus DSM 12680]
 gi|297144968|gb|ADI01725.1| tyrosine recombinase XerC [Syntrophothermus lipocalidus DSM 12680]
          Length = 306

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 97/316 (30%), Positives = 156/316 (49%), Gaps = 26/316 (8%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA---FYTEEKITIQTIRQLSYTE 70
           LL   + +L++LEIE+G S LTL  Y  D  +F+   A       E+I  +    L    
Sbjct: 5   LLSHVKRFLEHLEIEKGASPLTLAGYRSDLERFVAHFADKRGIGPEEIGFEV---LDPRT 61

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +R +++  +   +   ++ R ++ ++SF KYL   +I   + +  +   ++   LPR L 
Sbjct: 62  VREYLAHLQECGLKRSTMARKVAALRSFGKYLCSSQIIEVNPVATVSTPRREKRLPRFLY 121

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            ++        LL        +  R+ AIL LLY  G+R+ E + L   +   ++  +R+
Sbjct: 122 SQEV-----EALLAAPDGGDVLGLRDQAILELLYATGIRVGELVGLDLPDFDAEERFIRV 176

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNP----GVF 243
            GKG K RIVP+     +A+  Y +     L    Q     +F    G  L+      + 
Sbjct: 177 MGKGSKERIVPVGARAVEAMNRYLNSSRRVLAARKQGTENAIFLNRHGTRLSARGVRNIV 236

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            RY+ ++     L L  + HTLRH+FATHLL+ G DLRS+Q +LGH RLSTTQ+YT+V +
Sbjct: 237 NRYVEEI----ALRLKISPHTLRHTFATHLLNGGADLRSVQELLGHARLSTTQVYTHVTA 292

Query: 304 KNGGDWMMEIYDQTHP 319
               + +  IYD   P
Sbjct: 293 ----ERLKNIYDDKFP 304


>gi|330752024|emb|CBL80536.1| tyrosine recombinase [uncultured Flavobacteria bacterium]
          Length = 323

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 98/303 (32%), Positives = 160/303 (52%), Gaps = 19/303 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           QN+L+   IERGLS+ ++ +Y  D  + + ++    + KI+   I + +  E    I+K 
Sbjct: 36  QNYLK---IERGLSENSIANYTFDINKLVKWMVI-NDIKISPINIEKETLQEFIYTIAK- 90

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
              ++  RS  R +SG+K F  YL    +  E    N  +L +S  + R L +  ++  +
Sbjct: 91  ---ELNPRSQSRIISGLKGFFNYL----VFEEYRTTNPLDLIESPKIGRKLPDILSIEEI 143

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D  ++ T   TK    RN  I+ +LYGCGLR+SE ++L   ++  D+  +++ GKG+K R
Sbjct: 144 D-AIISTIDLTKPQGERNRGIIEVLYGCGLRVSELINLKISDLFFDEGFIKVTGKGNKQR 202

Query: 199 IVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            VP+     K I  Y +       +  N Q  LF   RG  L   +    +++L    G+
Sbjct: 203 FVPIGSLTIKFIDIYRNEIRVHQVIKPNAQDTLFLNRRGNGLTRAMIFHIVKELTEKAGI 262

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HT RHSFATHLL NG DLR+IQ +LGH  ++TT+IYT+++  +    + +I + 
Sbjct: 263 HKKISPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEIYTHIDKSH----LTQIINN 318

Query: 317 THP 319
            HP
Sbjct: 319 FHP 321


>gi|322515725|ref|ZP_08068691.1| tyrosine recombinase XerD [Actinobacillus ureae ATCC 25976]
 gi|322118197|gb|EFX90503.1| tyrosine recombinase XerD [Actinobacillus ureae ATCC 25976]
          Length = 297

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 97/303 (32%), Positives = 155/303 (51%), Gaps = 18/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L  E GLS+ T  SY  D  +F       +E   T +    L + ++++F+ +R
Sbjct: 9   EQFLDTLWQEHGLSENTSASYRLDLERF-------SEWLPTPKAFLTLDHFDLQSFLGER 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R LS ++ F ++L       +   L + + +K  +LP++L+E+Q + L+
Sbjct: 62  LEQGYKATSSARMLSCLRKFFRFLYIENYRQDDPTLTLISPRKPTNLPKSLSEEQVMDLL 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D       +    ++ R+ A+L LLY  GLR++E +SLT  N+   Q  +RI GKG+K R
Sbjct: 122 D-----CPNTLDPVELRDKAMLELLYATGLRVTELVSLTTDNLNLRQGVMRIVGKGNKER 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+       I E++      L  NIQ  + F   RG  +    F   I+      G+ 
Sbjct: 177 LVPIGEEASYWIQEFFQYGRAILLNNIQSDVVFPSRRGLQMTRQTFWHRIKHYAVLAGID 236

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V        +  ++ Q
Sbjct: 237 SEKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR----LKSLHQQ 292

Query: 317 THP 319
            HP
Sbjct: 293 FHP 295


>gi|237734604|ref|ZP_04565085.1| tyrosine recombinase xerC [Mollicutes bacterium D7]
 gi|229382424|gb|EEO32515.1| tyrosine recombinase xerC [Coprobacillus sp. D7]
          Length = 304

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 95/302 (31%), Positives = 158/302 (52%), Gaps = 18/302 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L+ +R  +  T++SY+   RQ   F  F  EE  +I     +SY  +R +++K   
Sbjct: 14  YLDYLQYQRHYADKTIESYK---RQIDHFKQFLIEE--SIDDYNDVSYAMLRGYLTKLYE 68

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   ++   LS ++SF  YL K ++  ++  L + + K +   P  L  ++ L L+D+
Sbjct: 69  KNLSKTTINHKLSALRSFFNYLLKEELINDNPFLLIESQKVAKRNPDFLFPEEILGLLDS 128

Query: 141 VLLHTSHETKW-IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           +      ETK  +  RN A++ L+Y  GLR SE ++L   NI  +Q  L I GKG+K R 
Sbjct: 129 I------ETKDDLGIRNKAMMELMYASGLRCSEVVNLQLSNIDFNQMVLFIHGKGNKDRY 182

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGLP 257
           VP      + +++Y      +L +  +   F  +   G PL     +  + ++ R     
Sbjct: 183 VPFHDYAGEWLIKYIQEARENLMIKNEGHNFVFVNKFGNPLTNRGVENIVDRIMRLYDST 242

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                HT+RHSFATHLL+ G D+R++Q +LGH  LSTTQIYT+++     D + E+Y + 
Sbjct: 243 KKIHPHTIRHSFATHLLNAGADIRTVQELLGHENLSTTQIYTHISR----DHLKEVYLKA 298

Query: 318 HP 319
           HP
Sbjct: 299 HP 300


>gi|187734784|ref|YP_001876896.1| tyrosine recombinase XerC [Akkermansia muciniphila ATCC BAA-835]
 gi|187424836|gb|ACD04115.1| tyrosine recombinase XerC [Akkermansia muciniphila ATCC BAA-835]
          Length = 300

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 152/309 (49%), Gaps = 20/309 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA--FYTEEKITIQTIRQLSYTEIR 72
           L+  Q++LQ LE+E+  S  T++ Y    RQF  + A  F   E  T   +R   + E++
Sbjct: 6   LEPEQDFLQYLEVEKQASPHTVEVYARALRQFRAWAADSFPGWENCTPDQMRDWLFQELK 65

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
                    +    S++   + ++SF +++ +R     + +  +   ++  +LP  L   
Sbjct: 66  --------DEAATSSIRLRFAALRSFYRFMMRRHGLETNPMTGVSLPRRKKTLPVFLTLN 117

Query: 133 QALTLVD--NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           Q L L++        ++   W+  R++AIL L Y CG+R+SE + L   ++      +++
Sbjct: 118 QMLELLELPYKTAVPANAPAWLPYRDAAILELFYSCGMRLSELVGLDVGSVDHRFRGVKV 177

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG K RI+P+      A+  Y  +     N     PLF    G  L+    Q  + + 
Sbjct: 178 MGKGRKERILPVGTPALAALETYVSMACLPKNS----PLFVSRIGTRLSARSVQMMLNKY 233

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +   +P + + H +RH+FATH+L  G DLRS+Q +LGH  LSTTQIYT+V        M
Sbjct: 234 VKLSSIPFTISPHKIRHTFATHILEAGADLRSVQELLGHASLSTTQIYTHVTRAR----M 289

Query: 311 MEIYDQTHP 319
            E+Y Q HP
Sbjct: 290 AEVYRQAHP 298


>gi|258590894|emb|CBE67189.1| Tyrosine recombinase xerC [NC10 bacterium 'Dutch sediment']
          Length = 349

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 105/334 (31%), Positives = 166/334 (49%), Gaps = 36/334 (10%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI--TIQTI------- 63
           ++L++ + +L  L+ ER  S  TL++Y  D +QF  FL      ++  T+  +       
Sbjct: 23  QMLEQIEAYLLYLQAERAASPHTLKNYAIDLQQFRTFLRAGESSQLEPTVSAVERPVVRD 82

Query: 64  --------RQLSYTEI-----RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE 110
                   RQ+   EI     RAF++    + I   S+ R L+ ++SF +YL +  +   
Sbjct: 83  TGRGDALHRQIKPGEIDVLAIRAFVADLHRRGIARSSIARKLATLRSFFRYLCREGVVAA 142

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
               N   L  +  LP+ L     +  VD  LL +  E     AR+ AIL L Y  G+R+
Sbjct: 143 ----NPAKLVSTPKLPKRLPAYLTVDEVDR-LLASPGEQDLPGARDLAILELFYASGIRL 197

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQ 226
           SE   L  +++   +  +R++GKG K RIVP+    + ++R+ +    DL      +  +
Sbjct: 198 SELTGLDVRDVDIREGLVRVKGKGGKERIVPVGSKAIVALRRYLDRRSDLIHESKRVAPE 257

Query: 227 -LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
            + LF   +G  L+     R + +     G+    T H LRHS+ATHLL  G DLR+IQ 
Sbjct: 258 SVALFLNRQGGRLSQRSIARIVLKHLNQSGVGPKITPHGLRHSYATHLLQAGADLRAIQE 317

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           +LGH RLSTTQ YT++N     D +M +YD+ HP
Sbjct: 318 LLGHSRLSTTQRYTHLNL----DHLMAVYDKAHP 347


>gi|300722127|ref|YP_003711410.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC
           19061]
 gi|297628627|emb|CBJ89205.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC
           19061]
          Length = 323

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 156/303 (51%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + +E+ L++ TL SY  D +    +L  Y  + + +Q I      E+++F+++R
Sbjct: 34  EQFLDTIWLEKDLAENTLASYRLDLQALDNWLMNYGHDVLLVQVI------ELQSFLAER 87

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K+  +     +   K    LP+ L+EKQ     
Sbjct: 88  VDGGYKASSSARLLSAMRRLFQYLYREKMREDDPTALLSAPKLPKRLPKDLSEKQV---- 143

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL+T    + I+ R+ A+L +LY CGLR+SE + LT  ++   Q  +R+ GKG+K R
Sbjct: 144 -EDLLNTPLTDQPIELRDKAMLEVLYACGLRVSELVGLTLSDVSLRQGVVRVVGKGNKER 202

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       + +Y +   P+ LN  +    F   RG  +    F   I+       + 
Sbjct: 203 LVPLGEEAVYWLEKYLEYGRPWLLNGAVSDVFFPSKRGTQMTRQTFWHRIKHYAILAEID 262

Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  ++ Q
Sbjct: 263 AERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKVLHQQ 318

Query: 317 THP 319
            HP
Sbjct: 319 HHP 321


>gi|317489856|ref|ZP_07948349.1| tyrosine recombinase XerD [Eggerthella sp. 1_3_56FAA]
 gi|325829949|ref|ZP_08163407.1| tyrosine recombinase XerD [Eggerthella sp. HGA1]
 gi|316911011|gb|EFV32627.1| tyrosine recombinase XerD [Eggerthella sp. 1_3_56FAA]
 gi|325488116|gb|EGC90553.1| tyrosine recombinase XerD [Eggerthella sp. HGA1]
          Length = 297

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 156/310 (50%), Gaps = 21/310 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL +E   +L  L +ERG S LT+ +Y  D + +  FL     EK  ++++  +    I 
Sbjct: 3   ELYRE---YLAYLRVERGSSPLTVSAYAADLKDYAQFL-----EKRGVESLDDVDREVIV 54

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           A+ S    +     ++ R +S +K F ++L +      +    ++  K  + LP  L+  
Sbjct: 55  AYESDLFGRGYAASTVDRHVSVLKGFHRFLVREGYARRNPADTIQLPKAPDRLPDVLSVA 114

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q      + +L    +   +  RN AIL +LYGCGLR+SE   L   + + ++  L I G
Sbjct: 115 QV-----DAMLSRPLDEGPLALRNQAILEVLYGCGLRVSECTGLDLGDAILEEGYLHILG 169

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQ 249
           KG+K RI P+  +  +A+ +Y +    +L  +       +F   RG  L        + +
Sbjct: 170 KGNKERIAPISGAALRALRDYLERGRPELVRSYAKSTSAVFLNARGGRLTRQSVHSLVAE 229

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             R++G+  +   HTLRHSFATH+L+ G DLR IQ ILGH  +STTQIYT+VN  +    
Sbjct: 230 AGRFIGVA-NLHPHTLRHSFATHMLAGGADLRVIQEILGHSDISTTQIYTHVNRTH---- 284

Query: 310 MMEIYDQTHP 319
           + E Y   HP
Sbjct: 285 IREEYLSAHP 294


>gi|309780244|ref|ZP_07674995.1| tyrosine recombinase XerC [Ralstonia sp. 5_7_47FAA]
 gi|308920947|gb|EFP66593.1| tyrosine recombinase XerC [Ralstonia sp. 5_7_47FAA]
          Length = 328

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 99/325 (30%), Positives = 163/325 (50%), Gaps = 39/325 (12%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L+ ER LS  TL+SY   TR+  +      +    +  + QL    IR  +++   
Sbjct: 22  YLDALKFERQLSPHTLESY---TRELAVLQRLGAQHAANVD-LTQLQSHHIRRMMAQLHG 77

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVD 139
             +  RS+ R+LS  + + K++  R     +N ++ +R  K    LP+AL+ +QA+ L++
Sbjct: 78  DGLSGRSIARALSAWRGWFKWMALRDAAVTANPVDGVRAPKSPKRLPKALSVEQAVALME 137

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----------MD-DQSTL 188
             L     ET     R+ A+  L Y CGLR+SE +SL  +++          +D +   +
Sbjct: 138 Q-LPGDDPET----VRDRAVNELFYSCGLRLSELVSLDMRHVKAGAYESASWLDLEAREV 192

Query: 189 RIQGKGDKIRIVPL---------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           ++ GKG K R VP+              +A L   D  P D +      LF   RGK L 
Sbjct: 193 QVLGKGSKRRTVPVGTKAAEALAAWLAVRAQLARPDAAPEDAHA-----LFLSPRGKRLA 247

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               Q  +++     G+P     H LRHSFATH+L + GDLR++Q +LGH  +++TQ+YT
Sbjct: 248 QRQIQLRMKRNAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT 307

Query: 300 NVNSKNGGDWMMEIYDQTHPSITQK 324
           +++ ++    + +IYDQ HP   +K
Sbjct: 308 SLDFQH----LAKIYDQAHPRAKKK 328


>gi|88803246|ref|ZP_01118772.1| putative tyrosine recombinase [Polaribacter irgensii 23-P]
 gi|88780812|gb|EAR11991.1| putative tyrosine recombinase [Polaribacter irgensii 23-P]
          Length = 298

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 108/312 (34%), Positives = 156/312 (50%), Gaps = 29/312 (9%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +KE Q +L+   IERGLSK T+ SY  D  +  +F   + + KITI  I  ++   I+ F
Sbjct: 7   IKEYQMYLK---IERGLSKNTVDSYTKDIEKLCLF---FCKNKITISPI-NINSDLIKQF 59

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL----KKSNSLPRALN 130
           I     Q I  RS  R +SG++SF  YL    I  E  +LN  +L    K    LP  L+
Sbjct: 60  IYDIAKQ-INPRSQARIISGLRSFFDYL----IFEEYRVLNPTDLLETPKIGKKLPDTLS 114

Query: 131 EKQALTLVDNV-LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +     L   + L H   E      RN  +L  +Y CGLR+SE ++L   ++  ++  +R
Sbjct: 115 QDDIDALFSAIDLSHPQGE------RNRTLLETMYSCGLRVSELITLKVSDLFFEEGFIR 168

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDL--CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           + GKG+K R VP+       I  Y        +     +  LF   RGK L   +    +
Sbjct: 169 VLGKGNKERYVPIHKDAESYISIYKRTIRTHIEPKKGFEDTLFLNRRGKGLTRQMIFIIL 228

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           + L   + L    + HTLRHSFATHLL NG DLR IQ ILGH  ++TT+IY +V+     
Sbjct: 229 KDLAFKIDLKKKISPHTLRHSFATHLLQNGADLRVIQQILGHESITTTEIYVHVDKT--- 285

Query: 308 DWMMEIYDQTHP 319
            ++ E+ +  HP
Sbjct: 286 -YLKEVVETFHP 296


>gi|85859051|ref|YP_461253.1| integrase/recombinase [Syntrophus aciditrophicus SB]
 gi|85722142|gb|ABC77085.1| integrase/recombinase [Syntrophus aciditrophicus SB]
          Length = 296

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 165/314 (52%), Gaps = 24/314 (7%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++F+L+ E   +L  L +E+G S  TL++Y  D  ++   +     ++  I+ I ++S  
Sbjct: 1   MNFQLIDE---YLNYLTVEKGASHNTLEAYGRDLSRYSGLI-----QERGIKEIHEISPD 52

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++  ++++ + + +   S+ RSL+ ++ F K+L + K   ++ +  +   K    LP  L
Sbjct: 53  DVIYYMAELKRKGLSANSINRSLAALRGFYKFLLREKKIEQNPVAEIELAKVWMRLPDTL 112

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           + ++   L+    + T         R++A+L L+Y  GLR+SE +SLT  +I      L 
Sbjct: 113 SHEEMDQLLSQPGVRTDSAI-----RDTAMLELMYATGLRVSELISLTTGSINWQVGYLV 167

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
           +QGKG+K RIVP+     + +  Y+D     C      N+   LF    G+ +    F +
Sbjct: 168 VQGKGNKERIVPIGQVAYEHVRRYFDEVRPKCIRGAQTNV---LFLNKSGQGMTRQGFWK 224

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +R+     GL      HT RHSFA+HLL  G DLRS+Q +LGH  +STTQIYT+V  ++
Sbjct: 225 LVRKYAVKAGLQKKVHPHTFRHSFASHLLEGGADLRSVQMMLGHADISTTQIYTHVTREH 284

Query: 306 GGDWMMEIYDQTHP 319
               + +I+ + HP
Sbjct: 285 ----LKDIHKKYHP 294


>gi|312879576|ref|ZP_07739376.1| integrase family protein [Aminomonas paucivorans DSM 12260]
 gi|310782867|gb|EFQ23265.1| integrase family protein [Aminomonas paucivorans DSM 12260]
          Length = 294

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 98/289 (33%), Positives = 136/289 (47%), Gaps = 22/289 (7%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T  +Y  D  QF+ FL         ++    ++   +R F+           S  R 
Sbjct: 23  SENTTVNYAVDLAQFVEFLQLEG-----VEGPEGINRDRVRGFLRSLMGYGFAPTSAARK 77

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           LS ++ F  YL +  +  +     +R  K   +LPRAL         D V L        
Sbjct: 78  LSSVRGFTAYLTREGLVEQDPAAGVRGPKLPANLPRAL------AYPDVVRLLEEGPGGR 131

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
              R+  +L LLYG GLR+SEA  L  +++  ++  LR+ GKG K R VP    V K +L
Sbjct: 132 HAQRDRLMLELLYGSGLRVSEAAGLDWEDLEPEERWLRVLGKGQKGRAVPFGRGV-KELL 190

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           + +   P    +  Q P+F G RG P + P    R + Q  R +GL    T HTLRHSFA
Sbjct: 191 QDWRPDP----VTRQGPVFPGERGAPRITPRTIHRLVTQSARRVGL-AGVTPHTLRHSFA 245

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           THLL  G  LR +Q +LGH  L TTQ Y ++ S    D M   Y+Q HP
Sbjct: 246 THLLEGGASLRVVQELLGHESLLTTQRYLDITS----DQMKRSYEQAHP 290


>gi|199598714|ref|ZP_03212128.1| Integrase [Lactobacillus rhamnosus HN001]
 gi|229552169|ref|ZP_04440894.1| integrase XerD [Lactobacillus rhamnosus LMS2-1]
 gi|258508373|ref|YP_003171124.1| tyrosine recombinase XerD [Lactobacillus rhamnosus GG]
 gi|258539584|ref|YP_003174083.1| tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705]
 gi|199590402|gb|EDY98494.1| Integrase [Lactobacillus rhamnosus HN001]
 gi|229314471|gb|EEN80444.1| integrase XerD [Lactobacillus rhamnosus LMS2-1]
 gi|257148300|emb|CAR87273.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus GG]
 gi|257151260|emb|CAR90232.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705]
 gi|259649687|dbj|BAI41849.1| integrase [Lactobacillus rhamnosus GG]
          Length = 293

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 155/302 (51%), Gaps = 19/302 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +++  L++ERGL++ T  SY+ D      F+A+ +++K   QT     +  I+AF+  + 
Sbjct: 7   DFIHYLDVERGLARTTQVSYQQD---LTTFMAWLSDQK---QTTFPEDFGVIQAFLKHQN 60

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
             K    S+ R +S ++ F ++L +        +  +   KK+  LP  L+  +      
Sbjct: 61  DTK-APASVSRMISALRKFYRFLLREGAIKSDPMTKIDTPKKAQHLPATLSGTEI----- 114

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           + L+     TK +  R+ AI  L+Y  GLR+SE + L    +    + L++ GKGDK R+
Sbjct: 115 DALMAKPDTTKPLGLRDRAIFELMYATGLRVSEVVGLRLDQLHLAMNLLQVTGKGDKERL 174

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           VP+ P     +  Y       L +  Q P  +F    G  L      + ++     +G+ 
Sbjct: 175 VPISPQAADWVNRYLQESRPRL-IKHQQPKAVFVNFHGHALTRQAIWKNLKAYIASVGIE 233

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T HTLRHSFAT LL NG DLR +Q +LGH  +STTQIYT++++++    ++ +Y +T
Sbjct: 234 KDVTPHTLRHSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQH----LVAVYHKT 289

Query: 318 HP 319
           HP
Sbjct: 290 HP 291


>gi|330936913|gb|EGH41038.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 298

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 151/308 (49%), Gaps = 32/308 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKRR 79
           +L  L +E+GLS  T  SY  D     +F  +  E  +  I   R++    I   ++ R 
Sbjct: 12  FLDALWLEKGLSDNTRDSYRSD---LALFNGWLQERNVDLISAGREV----ILDHLAWRV 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                 RS  R LSG++ F +YL + K+ +    L +   +    LP++L+E        
Sbjct: 65  ENAYKPRSTARFLSGVRGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADV----- 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL     ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K R+
Sbjct: 120 EALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179

Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           VP+           +R A  E     P D+       LF   RG  +    F   I+   
Sbjct: 180 VPMGEESIVWVERYLRGARDELLGGKPSDV-------LFPSTRGDQMTRQTFWHRIKHQA 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+  S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + 
Sbjct: 233 TVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288

Query: 312 EIYDQTHP 319
           E++ + HP
Sbjct: 289 ELHAKHHP 296


>gi|241664950|ref|YP_002983310.1| site-specific tyrosine recombinase XerC [Ralstonia pickettii 12D]
 gi|240866977|gb|ACS64638.1| tyrosine recombinase XerC [Ralstonia pickettii 12D]
          Length = 328

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 100/325 (30%), Positives = 162/325 (49%), Gaps = 39/325 (12%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L  ER LS  TL+SY   TR+  +      +    I  + QL    IR  +++   
Sbjct: 22  YLDALRFERQLSPHTLESY---TRELAVLQRLGAQHAANID-LTQLQSHHIRRMMAQLHG 77

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVD 139
             +  RS+ R+LS  + + K++  R     +N ++ +R  K    LP+AL+ +QA+ L++
Sbjct: 78  DGLSGRSIARALSAWRGWFKWMALRDAAVTANPVDGVRAPKSPKRLPKALSVEQAVALME 137

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----------MD-DQSTL 188
             L     ET     R+ A+  L Y CGLR+SE +SL  +++          +D +   +
Sbjct: 138 Q-LPGDDPET----VRDRAVNELFYSCGLRLSELVSLDMRHVKAGAYESASWLDLEAREV 192

Query: 189 RIQGKGDKIRIVPL---------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           ++ GKG K R VP+              +A L   D  P D +      LF   RGK L 
Sbjct: 193 QVLGKGSKRRTVPVGTKAAQALAAWLAVRAQLAKPDAAPEDAHA-----LFLSPRGKRLA 247

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               Q  +++     G+P     H LRHSFATH+L + GDLR++Q +LGH  +++TQ+YT
Sbjct: 248 QRQIQLRMKRNAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT 307

Query: 300 NVNSKNGGDWMMEIYDQTHPSITQK 324
           +++ ++    + +IYDQ HP   +K
Sbjct: 308 SLDFQH----LAKIYDQAHPRAKKK 328


>gi|300718203|ref|YP_003743006.1| Tyrosine recombinase [Erwinia billingiae Eb661]
 gi|299064039|emb|CAX61159.1| Tyrosine recombinase [Erwinia billingiae Eb661]
          Length = 297

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 99/303 (32%), Positives = 160/303 (52%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L IER L++ T+ SY  D    L+ LA + +   +   + ++   +++ F+++R
Sbjct: 8   EQFLDALWIERNLAENTVASYRLD----LLSLAGWLQHNES--NLLRVDAVDLQGFLAER 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q    +
Sbjct: 62  VEGGYKATSSARLLSAMRRLFQYLYREKLREDDPSALLASPKLPQRLPKDLSEAQ----I 117

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D +L   S E   I+ R+ A+L LLY  GLR++E +SLT  N+   Q  +R+ GKGDK R
Sbjct: 118 DRLLQAPSVEQP-IELRDKAMLELLYATGLRVTELVSLTLNNVSLRQGVVRVIGKGDKER 176

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       I +Y +   P+ LN      LF   R + +    F   I+      G+ 
Sbjct: 177 LVPLGEEAVHWIEQYLEYGRPWLLNGQTLDVLFPSSRAQQMTRQTFWHRIKHYATLAGID 236

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            +  + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q
Sbjct: 237 SAKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQ 292

Query: 317 THP 319
            HP
Sbjct: 293 HHP 295


>gi|145220218|ref|YP_001130927.1| phage integrase family protein [Prosthecochloris vibrioformis DSM
           265]
 gi|145206382|gb|ABP37425.1| phage integrase family protein [Chlorobium phaeovibrioides DSM 265]
          Length = 325

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 165/306 (53%), Gaps = 32/306 (10%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           LS+ T+ +Y  D RQF   L+           ++ L+  +IR F+++   + +  RS+ R
Sbjct: 33  LSEHTVLAYRTDIRQFFSILS-------PPDDLQLLTAADIRFFMAELIRRGLQPRSIAR 85

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH--- 147
            L+ ++SF  YL++R +   S +  +   +   S+P  L+  +   L + V+    +   
Sbjct: 86  KLASVRSFFHYLQERGLLGHSVLQTLSMPRYQRSVPAFLSVSETRELFETVVPAARYRKG 145

Query: 148 ETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
           E   +D+    R++A L LLYGCGLRISE  +L   ++      +++ GKG K RIVPL 
Sbjct: 146 EAGLLDSFVLHRDAAALELLYGCGLRISELTALQDNDLELAGGFVKLTGKGRKQRIVPLG 205

Query: 204 PSVRKAILEYYDLCP--FDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
            +   A+ +Y+++    F +    +L     +F   +GK + P + QR  R   +YL LP
Sbjct: 206 LAAVSALKKYFEVRRNFFRMKRGTELVGNGYVFLTNKGKKIYPMLVQRMTR---KYL-LP 261

Query: 258 LST----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           ++       H LRHSFATHLL++G DL+S+  +LGH  LSTT+IYT+V+     + + E+
Sbjct: 262 VTEQKKKNPHILRHSFATHLLNSGADLQSVSEMLGHSNLSTTEIYTHVSF----ERLKEV 317

Query: 314 YDQTHP 319
           Y + HP
Sbjct: 318 YRKAHP 323


>gi|332527817|ref|ZP_08403855.1| tyrosine recombinase XerC subunit [Rubrivivax benzoatilyticus JA2]
 gi|332112212|gb|EGJ12188.1| tyrosine recombinase XerC subunit [Rubrivivax benzoatilyticus JA2]
          Length = 313

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 99/317 (31%), Positives = 153/317 (48%), Gaps = 29/317 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q WL +L +ER L+  TL  Y    R  L  LA           +R      +R ++++ 
Sbjct: 10  QRWLDHLGVERRLAPRTLALY----RDALGRLAASAAADGV--ELRAAQPHHVRRWMAQL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           RT  +  RS+   LS  +   ++  +  +   + +  ++  K    LP+AL   QA+ L 
Sbjct: 64  RTAGLAPRSIALVLSAWRGLYRWWGREGLVPANPVDGLKAPKTGKPLPKALPVDQAVALA 123

Query: 139 DNVLLHTSHETKWIDAR----NSAILYLLYGCGLRISE--ALSLTPQN-----IMDDQST 187
           +       HE +  DAR    + AI+ LLYGCGLRI E  AL L P       I  + ++
Sbjct: 124 E-------HENEDGDARLAARDHAIVELLYGCGLRIGELLALDLAPSAGAAGWIDAEDAS 176

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
             + GKG K R VP+  +     L  +      L    +  LF   RG+ L+ G  +  +
Sbjct: 177 AHVLGKGRKRRSVPV-GAKALEALAAWLAVRGQLAAAGEPALFVSRRGERLSQGALRARL 235

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +Q+    GLP     H LRHS+A+HLL + GDLR++Q +LGH  +STTQ+YT ++ ++  
Sbjct: 236 KQIALQAGLPTHVHPHMLRHSYASHLLQSSGDLRAVQELLGHASISTTQVYTQLDFQH-- 293

Query: 308 DWMMEIYDQTHPSITQK 324
             +   YD  HP   +K
Sbjct: 294 --LARAYDAAHPRAKRK 308


>gi|94266574|ref|ZP_01290258.1| Tyrosine recombinase XerD [delta proteobacterium MLMS-1]
 gi|93452792|gb|EAT03324.1| Tyrosine recombinase XerD [delta proteobacterium MLMS-1]
          Length = 325

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 155/302 (51%), Gaps = 16/302 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +LQ L  ER L+  TL +Y  D   F  FLA        I    +++   +RA++   R 
Sbjct: 35  FLQYLAAERRLAANTLTAYHTDLLSFFDFLA-RRRPTPAISGPAEITPEHLRAYLEACRR 93

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           ++I  RS  R LS +++F ++L++  +     S +L++   K    LP+ LN  +     
Sbjct: 94  RQIAARSNARRLSALRAFFRFLRRENLIPADPSALLDLP--KPGRPLPKVLNLDEV---- 147

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            N LL        +  R+ A+L+LLY  G+R+SE ++L P   ++    LR+ GKG K R
Sbjct: 148 -NQLLAGPAAATPLALRDHAMLHLLYATGMRVSELVNL-PVAAVNQAGHLRVLGKGSKER 205

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           ++P   +  +++  Y     P  L       LF   RG  +    F + IR   R   + 
Sbjct: 206 LIPFGAAAGRSLARYITQGRPRLLKKRRSDFLFVTNRGTAMTRLRFWQIIRDRARVCRID 265

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRHSFATHLL +G DLR++Q++LGH  ++TTQIYT+V+++     + +I+ Q 
Sbjct: 266 KEVGPHVLRHSFATHLLEHGADLRAVQAMLGHADIATTQIYTHVDAQR----LKKIHRQF 321

Query: 318 HP 319
           HP
Sbjct: 322 HP 323


>gi|145295931|ref|YP_001138752.1| site-specific tyrosine recombinase XerC [Corynebacterium glutamicum
           R]
 gi|140845851|dbj|BAF54850.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 315

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 159/300 (53%), Gaps = 21/300 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++ ++L++  G S  T++ Y  D    L  +A       TI+ I   S   +R ++    
Sbjct: 35  DFCEHLDLVVGRSAATIRGYRSD----LYAMAD------TIEDIDNFSLPTLRQWLGIAV 84

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +     +L R  + +K+F  + +K           + + K +  LP+ L E+QA   V+
Sbjct: 85  DEGKSRATLARRTASVKAFSSWAQKNGHLKADEAARLISPKITRDLPKILGEQQAGDFVE 144

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           N    +++E +++  R+SAIL LLY  G+R++E   +   +I  D+  +R+ GKG+K R+
Sbjct: 145 NAA--STNEEEFL--RDSAILELLYATGMRVAELCGIDLPDIDYDRKMVRVLGKGNKERV 200

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VP   S  KA+  + D+   D        LF G+RG+ +N    +R + ++ +  G+   
Sbjct: 201 VPFGESAHKALRNWLDV--RDEMAEDPKALFVGVRGQRINARQVRRIVDRVAKVTGVD-H 257

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + H+LRH+ ATHLL  G DLR +Q +LGH  + TTQIYT+V++K     ++E +++ HP
Sbjct: 258 LSPHSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNKR----LLEAFNKAHP 313


>gi|222055852|ref|YP_002538214.1| tyrosine recombinase XerD [Geobacter sp. FRC-32]
 gi|221565141|gb|ACM21113.1| tyrosine recombinase XerD [Geobacter sp. FRC-32]
          Length = 295

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 97/301 (32%), Positives = 157/301 (52%), Gaps = 17/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L++E+GL+K TL++Y  D   +L FLA   + ++ +  I  +   E  A + +R  
Sbjct: 8   FLNYLQVEKGLTKNTLEAYSRDLSVYLDFLA--GQGRLDLDHITAMDVIEHLAGLKER-- 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS  R+LS +K F ++L        +  + +   +  N LP  L+ ++       
Sbjct: 64  -GLSPRSRARALSAVKMFHRFLMVENHCPNNPAVIIEAPRSLNRLPDVLSGREV-----E 117

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +LL ++      D R+ A+L +LY  GLR+SE ++L  +++  D   L   GKG+K R+V
Sbjct: 118 LLLDSARSADLNDVRDLAMLEVLYATGLRVSELVALKLRDVNLDAGYLLTMGKGEKERLV 177

Query: 201 PLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           PL  + R A  EY        D   + ++ LF    G  +    F   I++     G+  
Sbjct: 178 PLGETARLATAEYLRSARVKADRKGDCEI-LFISRLGDGMTRQAFWNIIKKRAAAAGIRK 236

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           S + H+LRHSFATHLL NG DLRS+Q +LGH  LS+TQIYT+V  +     + +++   H
Sbjct: 237 SISPHSLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRER----LKQLHQDIH 292

Query: 319 P 319
           P
Sbjct: 293 P 293


>gi|134298963|ref|YP_001112459.1| tyrosine recombinase XerD [Desulfotomaculum reducens MI-1]
 gi|134051663|gb|ABO49634.1| tyrosine recombinase XerD subunit [Desulfotomaculum reducens MI-1]
          Length = 296

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 95/302 (31%), Positives = 153/302 (50%), Gaps = 16/302 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            ++  L +ERGL++ TL SY  D  Q+L  L     +K  + ++ Q     I + + K +
Sbjct: 7   EFIHYLAVERGLAQNTLASYRIDLSQYLDHL-----KKQGVSSLTQADRNHILSHLYKLQ 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  ++ R L+ +K F ++L      +E   +++ + K    LP  L+ ++    V+
Sbjct: 62  KDGKAPATISRHLAALKHFYRFLVSDGAVSEDYTVSLESPKLKQRLPHVLSTEE----VE 117

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           N LL     +     R+ A+L L+Y  G+R+SE +SL   ++  D   ++  GKG K RI
Sbjct: 118 N-LLCQPQLSDPAGLRDKAMLELIYATGIRVSEMVSLNLPDVELDMGYIKCFGKGAKERI 176

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +PL     + I EY +     L         LF  ++GK L    F + I++  +   + 
Sbjct: 177 IPLGSVAIRYIREYLERSRVKLTKGKTEHQALFVNVQGKRLTRQGFWKIIKKYAKEGRIN 236

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT++        + E+Y + 
Sbjct: 237 KPITPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHLTKLR----LREVYTKA 292

Query: 318 HP 319
           HP
Sbjct: 293 HP 294


>gi|227328397|ref|ZP_03832421.1| site-specific tyrosine recombinase XerD [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 299

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 100/304 (32%), Positives = 159/304 (52%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER L++ TL SY  D R    ++A +    +  Q++      +++AF++ R
Sbjct: 10  EQFLDALWLERNLAENTLASYRLDLRTLAEWVAHHENGLLQAQSL------DLQAFLADR 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++ F +YL + K+ ++     + + K    LP+ L+E Q    V
Sbjct: 64  VEGGYKATSSARLLSAMRRFFQYLYREKLRSDDPSAVLSSPKLPQRLPKDLSEAQ----V 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D +L   S E   ++ R+ A+L +LY  GLR+SE +SLT  ++   Q  +R+ GKG+K R
Sbjct: 120 DALLNAPSIEQP-LELRDKAMLEVLYATGLRVSELVSLTMSDVSLRQGVVRVLGKGNKER 178

Query: 199 IVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL       I EYY     P+ LN      LF   R + +    F   I+       +
Sbjct: 179 LVPLGEEAVYWI-EYYLEHGRPWLLNGQTLDVLFPSSRARQMTRQTFWHRIKHYAVLASI 237

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 238 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQ 293

Query: 316 QTHP 319
           Q HP
Sbjct: 294 QHHP 297


>gi|255320348|ref|ZP_05361532.1| site-specific recombinase XerC [Acinetobacter radioresistens SK82]
 gi|262379369|ref|ZP_06072525.1| tyrosine recombinase XerC [Acinetobacter radioresistens SH164]
 gi|255302543|gb|EET81776.1| site-specific recombinase XerC [Acinetobacter radioresistens SK82]
 gi|262298826|gb|EEY86739.1| tyrosine recombinase XerC [Acinetobacter radioresistens SH164]
          Length = 306

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 163/302 (53%), Gaps = 16/302 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS-KRR 79
           WL+  EI+   S  TL +Y  D + FL F A    +K+ + +I     +++R +++ K  
Sbjct: 12  WLKEREIQNQ-SAHTLSAYARDVKDFLDFCAV---KKLPLNSIEA---SDLREYLALKVE 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +++   SL+R LS I+ F+K+ ++ +    +   + +  ++   LP  ++ +    ++D
Sbjct: 65  REQLSSSSLQRHLSAIRQFMKWAEQGQYLGFNPADDFQLKRQPRPLPGMIDIETVQQILD 124

Query: 140 NVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                   +   W+  R+ A+L LLY  GLR++E  SL  ++I  ++  LRI GKG+K R
Sbjct: 125 QPAPEKLQDQHLWL--RDKAMLELLYSSGLRLTELQSLCMKDIDFNRRLLRITGKGNKTR 182

Query: 199 IVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           IVP      +++L++ ++   +    N    +F   +G  L P   +  ++      G+ 
Sbjct: 183 IVPFGTQAYESLLKWLEVYRLWQGQFNADSAVFISQKGGQLGPRQIENRVKLQALRAGVN 242

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           +    H LRH FA+H+LSN GDLR++Q +LGH  LSTTQIYT+++     D + +IYDQ 
Sbjct: 243 IDLHPHLLRHCFASHMLSNSGDLRAVQEMLGHSNLSTTQIYTHIDF----DHLAKIYDQA 298

Query: 318 HP 319
           HP
Sbjct: 299 HP 300


>gi|296136669|ref|YP_003643911.1| integrase family protein [Thiomonas intermedia K12]
 gi|295796791|gb|ADG31581.1| integrase family protein [Thiomonas intermedia K12]
          Length = 336

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 157/328 (47%), Gaps = 35/328 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L + + ER L++ TL +Y  D    L        ++       Q+    IR + ++  
Sbjct: 20  DYLAHAQTERRLAEGTLVNYRRDLDDLL--------QRAETLGAAQIESVHIRRWAAQLH 71

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV- 138
              +  R++   LS  +SF +++ +      + + ++R  K +  LP+AL+  QA+ L  
Sbjct: 72  AGGMSPRAIAARLSAWRSFFRWMGRLGFVAANPVQDVRAPKAAKPLPKALSVDQAVALAA 131

Query: 139 -----------DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL------TPQNI 181
                       +   H +       AR  AI  LLY CGLR+SE   L      T +  
Sbjct: 132 YSPQKSTPAARPHRRPHQAEPFATRSARVHAIAELLYSCGLRVSELTGLDVRASKTARGW 191

Query: 182 MD-DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF----DLNLNIQLPLFRGIRGK 236
           +D D +   + GKG+K R VP+      A+ ++ +  P     D + + Q+ LF G RG 
Sbjct: 192 IDWDAAEATVTGKGNKRRSVPIGRPALLALRQWLEQRPALLRPDADADAQVALFLGARGA 251

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L P      +R+  R  GL      H LRHSFA+H+L + GDLR++Q +LGH  ++TTQ
Sbjct: 252 RLTPQRVWLELREHARAAGLDARVHPHMLRHSFASHVLQSSGDLRAVQELLGHSSIATTQ 311

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           +YT ++ ++    + ++YD  HP   +K
Sbjct: 312 VYTRLDFQH----LAKVYDAAHPRARKK 335


>gi|332308051|ref|YP_004435902.1| tyrosine recombinase XerD [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175380|gb|AEE24634.1| tyrosine recombinase XerD [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 301

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 153/301 (50%), Gaps = 13/301 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + +E+GLS+ TL++Y  D  +F    + Y  +++    +  +   +I  +++ R
Sbjct: 12  EQFLDTIWLEKGLSENTLEAYRSDLTKF----SDYLNKQLPHTHLLDIQTEDINQYMAHR 67

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               + +RS  R LS  + F  Y+    +  +  +  M+N K S  LP+ L+E+Q    V
Sbjct: 68  YDSGLTERSSARCLSSFRRFSGYMLAHGLREDDPVSRMQNPKLSKPLPKTLSEQQ----V 123

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D+ LL+       I  R+ A+L +LY  GLR++E ++L    +   Q  +R+ GKG+K R
Sbjct: 124 DD-LLNAPQTDDPIHLRDKAMLEVLYATGLRVTELVTLRVGQLSVSQGVVRVTGKGNKER 182

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VPL       + +Y       L  N    LF   RG  +    F   I+       +  
Sbjct: 183 LVPLGEEALDWLSKYLKEARGALLRNESDVLFPSNRGTIMTRQTFWHRIKFHAAQANITS 242

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V +      + E+    H
Sbjct: 243 DLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATAR----LQELVANHH 298

Query: 319 P 319
           P
Sbjct: 299 P 299


>gi|253687046|ref|YP_003016236.1| tyrosine recombinase XerD [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753624|gb|ACT11700.1| tyrosine recombinase XerD [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 299

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 102/308 (33%), Positives = 160/308 (51%), Gaps = 27/308 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER L++ TL SY  D R    +LA +  + +  Q +      +++AF++ R
Sbjct: 10  EQFLDALWLERNLAENTLASYRLDLRTLAEWLAHHDNDLLQAQAL------DLQAFLADR 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++ F +YL + K+ ++     + + K    LP+ L+E Q    V
Sbjct: 64  VDGGYKATSSARLLSAMRRFFQYLYREKLRSDDPSAVLSSPKLPQRLPKDLSEAQ----V 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D +L   S E   ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K R
Sbjct: 120 DALLNAPSIEQP-LELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVLGKGNKER 178

Query: 199 IVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL       I EYY     P+ LN      LF   R + +    F   I+    Y  +
Sbjct: 179 LVPLGEEAVYWI-EYYLEHGRPWLLNGQTLDVLFPSNRARQMTRQTFWHRIK----YYAV 233

Query: 257 PLST-----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             S      + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + 
Sbjct: 234 LASIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LK 289

Query: 312 EIYDQTHP 319
           +++ Q HP
Sbjct: 290 QLHQQHHP 297


>gi|257791851|ref|YP_003182457.1| tyrosine recombinase XerD [Eggerthella lenta DSM 2243]
 gi|257475748|gb|ACV56068.1| tyrosine recombinase XerD [Eggerthella lenta DSM 2243]
          Length = 297

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 156/310 (50%), Gaps = 21/310 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL +E   +L  L +ERG S LT+ +Y  D + +  FL     EK  ++++  +    I 
Sbjct: 3   ELYRE---YLAYLRVERGSSPLTVSAYAADLKDYAQFL-----EKRGVESLDDVDREVIV 54

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           A+ S    +     ++ R +S +K F ++L +      +    ++  K  + LP  L+  
Sbjct: 55  AYESDLFGRGYAASTVDRHVSVLKGFHRFLVREGYARRNPADTIQLPKAPDRLPDVLSVA 114

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q      + +L    +   +  RN AIL +LYGCGLR+SE   L   + + ++  L I G
Sbjct: 115 QV-----DAMLSRPLDEGPLALRNRAILEVLYGCGLRVSECTGLDLGDAILEEGYLHILG 169

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQ 249
           KG+K RI P+  +  +A+ +Y +    +L  +       +F   RG  L        + +
Sbjct: 170 KGNKERIAPISGAALRALRDYLERGRPELVRSYAKSTSAVFLNARGGRLTRQSVHSLVAE 229

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             R++G+  +   HTLRHSFATH+L+ G DLR IQ ILGH  +STTQIYT+VN  +    
Sbjct: 230 AGRFIGVA-NLHPHTLRHSFATHMLAGGADLRVIQEILGHSDISTTQIYTHVNRTH---- 284

Query: 310 MMEIYDQTHP 319
           + E Y   HP
Sbjct: 285 IREEYLSAHP 294


>gi|114331692|ref|YP_747914.1| tyrosine recombinase XerD [Nitrosomonas eutropha C91]
 gi|114308706|gb|ABI59949.1| tyrosine recombinase XerD [Nitrosomonas eutropha C91]
          Length = 305

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 98/300 (32%), Positives = 152/300 (50%), Gaps = 21/300 (7%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E GLS+ TL SY  D  Q + +L+   +    +  + Q    ++ AF+S R  Q   
Sbjct: 18  LWLEDGLSRNTLASYRADLMQLVEWLSRREQTNGLLNDVTQ---ADLLAFLSDRIAQGAK 74

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +  R+L+ I+ F +YL ++        +N+ + K S  LP +L E +        LL 
Sbjct: 75  ASTASRALACIRRFYRYLLRQGKILIDPAVNIDSPKVSRHLPVSLAESEV-----EALLA 129

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            S   + +  R+ A+L +LY  GLR+SE +SL    +  D   +RI GKG+K R++PL  
Sbjct: 130 VSDIKQPLGLRDRAMLEILYAAGLRVSELVSLAISQVRQDMGVVRILGKGNKERLIPLGD 189

Query: 205 SVRKAILEYYDLC-----PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
                 L + DL      P  L       LF   RG  +    F   I++  R  G+   
Sbjct: 190 EA----LYWLDLYLREARPILLAGKHSNMLFVTTRGDAMTRQAFWYLIKRHARQAGIVKQ 245

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     + +++ + HP
Sbjct: 246 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LRQLHARHHP 301


>gi|330895934|gb|EGH28218.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 298

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 151/308 (49%), Gaps = 32/308 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKRR 79
           +L  L +E+GLS  T  SY  D     +F  +  E  +  I   R++    I   ++ R 
Sbjct: 12  FLDALWLEKGLSDNTRDSYRSD---LALFNGWLQERNVDLISAGREV----ILDHLAWRV 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                 RS  R LSG++ F +YL + K+ +    L +   +    LP++L+E        
Sbjct: 65  ENAYKPRSTARFLSGVRGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADV----- 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL     ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K R+
Sbjct: 120 EALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179

Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           VP+           +R A  E     P D+       LF   RG  +    F   I+   
Sbjct: 180 VPMGEESIVWVERYLRGARDELLGGKPSDV-------LFPSTRGDQMTRQTFWHRIKHQA 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+  S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + 
Sbjct: 233 TVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288

Query: 312 EIYDQTHP 319
           E++ + HP
Sbjct: 289 ELHARHHP 296


>gi|114566153|ref|YP_753307.1| recombinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114337088|gb|ABI67936.1| tyrosine recombinase XerD subunit [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 296

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 99/302 (32%), Positives = 157/302 (51%), Gaps = 14/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  L  E+GL+  +  +Y+ D  +F  FL    +E     + + +S  +I AF++ +
Sbjct: 6   EDFISYLNFEKGLAANSRIAYKRDLLKFQQFL----QENSRALSPQNISKHDIMAFLAWQ 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S+ RSLS IKS+ K+L       ++   ++   K    LP+ L+ ++    V
Sbjct: 62  LDQGAAHSSIARSLSSIKSYYKFLILEGELDKNPSSDLETPKIKRKLPQVLSIEE----V 117

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D  L+   +    +  R+ A+L L+YG G+R+SE LSL  +++      LR  GKG K R
Sbjct: 118 DK-LMEQPNPVVPLGIRDRAMLELMYGTGIRVSELLSLQVEDLNPTAGFLRCMGKGRKER 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           I+P+  +    +  Y       L  N ++  LF   RG+PL+   F + +        L 
Sbjct: 177 IIPVNQTSIDWVQRYLARVRNSLVKNPLERTLFLNARGRPLSRQGFFKILGNYVEKAELE 236

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT++        + E+Y Q 
Sbjct: 237 KEVTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHLTKSR----LREVYQQY 292

Query: 318 HP 319
           HP
Sbjct: 293 HP 294


>gi|301299347|ref|ZP_07205632.1| tyrosine recombinase XerC [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300853087|gb|EFK80686.1| tyrosine recombinase XerC [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 298

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 154/296 (52%), Gaps = 25/296 (8%)

Query: 21  WLQNLE----IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           W++  +    IE+  S  TL++Y  D + F+ F+    +E    ++ +++   ++ A++S
Sbjct: 5   WIEEFKKYLLIEKQYSDETLKAYSEDLQHFVDFI----DETGGAKSFKEIGSNDVHAYMS 60

Query: 77  KRRTQKIGDR----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
                 + DR    S+ R +S +++F  +L K ++T E+    ++  +   SLPR   EK
Sbjct: 61  Y-----LYDRYEMTSISRMISSLRAFYNFLIKNELTDENPFAYVQLKRHPRSLPRFFYEK 115

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L +     T  +T+ +  R+ A+L  LYG G+R+SE   L   N+      + + G
Sbjct: 116 EMTALFEA----TEGDTQML-IRDRALLESLYGTGMRVSECTGLKMGNVDLTNKKMLLHG 170

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQ 249
           KGDK R+VP     ++A+  Y++     L          +F    G PL P      ++Q
Sbjct: 171 KGDKDRLVPFGSYCQEALQRYFEQTRTPLMEKYHRDHDLVFVNHYGNPLTPAGVAYILKQ 230

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           + +   L  S   H LRH+FATHL+SNG DLR++Q +LGH  LSTTQIYT+V  ++
Sbjct: 231 IVKRSSLHTSIHPHELRHTFATHLMSNGADLRAVQELLGHSSLSTTQIYTHVTPEH 286


>gi|189485678|ref|YP_001956619.1| tyrosine recombinase XerC [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287637|dbj|BAG14158.1| tyrosine recombinase XerC [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 314

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 99/301 (32%), Positives = 155/301 (51%), Gaps = 29/301 (9%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  ER  S  TL++Y+ D   F +FL    ++++           +IR F+ +   +K+ 
Sbjct: 34  LNAERNFSAHTLRAYKRDISDFALFL---QKKRLNFS---HAGKRDIREFLEELGNKKLS 87

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNM-RNLKKSNSLPRALNEKQALTLVDNVLL 143
             +L R L+ + SF K+L   KI  E+ I +M  +LKK   +P  L E +   L++    
Sbjct: 88  RATLARKLAVLHSFYKFLIINKIIKENFIESMPASLKKDKKVPSFLTENEMQMLLN---- 143

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
                   +  R+ A++ L Y CGLRI E +SL  +NI    + + + GK +K RIVP+ 
Sbjct: 144 -----LPDLKPRDRAMIELFYSCGLRIEELVSLDLKNIDFISNVVTVTGKRNKERIVPVG 198

Query: 204 PSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
                AI +Y +       P+D    I+ P+F   R K L     +R + +     G   
Sbjct: 199 DICLHAIKDYINKRRNLGLPYD----IRSPVFLSDRAKRLGQRTARRILHRYFVKAGFTK 254

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HTLRH+FATH+L  G DLRS+Q +LGH  LS+TQIYT+V  ++    + ++Y +TH
Sbjct: 255 KVSPHTLRHTFATHILDRGCDLRSVQEMLGHKNLSSTQIYTHVTIES----LKKVYKETH 310

Query: 319 P 319
           P
Sbjct: 311 P 311


>gi|221065123|ref|ZP_03541228.1| integrase family protein [Comamonas testosteroni KF-1]
 gi|220710146|gb|EED65514.1| integrase family protein [Comamonas testosteroni KF-1]
          Length = 348

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 160/335 (47%), Gaps = 44/335 (13%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
            LPE+V         ++L+++ +++ L+  T   Y  D  +         +E +T+Q   
Sbjct: 15  QLPEVV--------HSYLEHVRVQKRLADRTHTLYALDLIKLQSLAQAADQELLTLQP-- 64

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
                 IR F ++  +     R +   LSG +SF ++  +R++   + +  +R  K +  
Sbjct: 65  ----AHIRRFAAQMHSAGRSARGIALILSGWRSFFRWAAQRELVPFNPVEGVRGPKAAKP 120

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP+AL    A+ L             WI+AR+ A+  LLY CGLR++E + L   ++  D
Sbjct: 121 LPKALAVDDAVQLAS---FQIPDADPWIEARDVAMTELLYSCGLRVAELVGL---DLRPD 174

Query: 185 QSTLR--------------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--- 227
           Q +L+              +QGKG K RIVP+     +A+  +  L    L    Q    
Sbjct: 175 QQSLQQGRGWIDLEAGDAHVQGKGSKRRIVPVGRMAIEALQRWLALRSSALTGAAQFKAQ 234

Query: 228 ---PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
               LF G RG+ L        ++Q  +  GL      H LRHSFA+H+L + GDLR++Q
Sbjct: 235 DETALFIGRRGERLGGHSVWSRLKQRGQRAGLASGVHPHVLRHSFASHMLQSSGDLRAVQ 294

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            +LGH  ++TTQIYT ++ ++    + + Y++ HP
Sbjct: 295 ELLGHASIATTQIYTRLDFQH----LAQAYEKAHP 325


>gi|56420850|ref|YP_148168.1| site-specific tyrosine recombinase XerD [Geobacillus kaustophilus
           HTA426]
 gi|56380692|dbj|BAD76600.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
          Length = 298

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 95/306 (31%), Positives = 157/306 (51%), Gaps = 16/306 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E +++L  L +ER L+  T+ SYE D ++++ +L     +   +Q   ++    I  F+ 
Sbjct: 4   ELKDFLHYLTVERNLAHNTIVSYERDLKKYVRYL----RQVEQLQAWGEVERLHILHFLK 59

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               Q    R++ R L+ I+SF ++L + KI  +   +++   +   +LP+ L+ ++   
Sbjct: 60  FLSEQGQSARTIARHLASIRSFHQFLLREKIAAQDPTVHIETPQFERTLPKVLSVEEV-- 117

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
                LL     +     R+ A+L LLY  G+R+SE + L   ++      +R  GKG K
Sbjct: 118 ---EALLAAPQVSTPFGLRDKAMLELLYATGMRVSELVQLNLSDVHLTMGFVRCYGKGRK 174

Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRY 253
            RIVP+     +A+  Y +   P  +N   +    LF    G+ L    F + +++L + 
Sbjct: 175 ERIVPIGRMAIEALAHYLERGRPQLVNPRRRATEALFLNHYGQRLTRQGFWKILKRLAKE 234

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V      D    +
Sbjct: 235 AGIEKELTPHTLRHSFATHLLENGADLRAVQELLGHADISTTQMYTHVTKTRLKD----V 290

Query: 314 YDQTHP 319
           Y Q HP
Sbjct: 291 YKQYHP 296


>gi|330443758|ref|YP_004376744.1| tyrosine recombinase XerD [Chlamydophila pecorum E58]
 gi|328806868|gb|AEB41041.1| tyrosine recombinase XerD [Chlamydophila pecorum E58]
          Length = 321

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 103/303 (33%), Positives = 155/303 (51%), Gaps = 32/303 (10%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L ++RGL + T+ +Y  D   FL+     + E+I        S   +  F+ K   +   
Sbjct: 40  LSVDRGLCQQTILAYSQDISLFLLLNKILSTEEI--------SQNSVCYFVEKLHERNEA 91

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL- 143
           + +L R L  +K F  +LK  ++     I+    + K   LP  L+ ++    V+ +LL 
Sbjct: 92  EATLARRLIALKVFFIFLKDAQLLKHPPIIEHPKIWKR--LPTVLSPQE----VEQLLLT 145

Query: 144 --HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
                H +  I AR++AILY LY  G+R+SE   L   ++ D+   +R+ GKG K R+VP
Sbjct: 146 PKRAKHLSPLIVARDTAILYTLYSTGIRVSELCDLEIGDVNDE--FIRVTGKGSKTRLVP 203

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYL-GL 256
           L    R AI  Y  L PF   +  + P    LF   RGK L      R I +  + +   
Sbjct: 204 LGSLARDAIDAY--LSPFRDLMRQKSPKEEHLFLSFRGKKLERSCIWRRIHEYAKQITSK 261

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           P+S   H+LRH+FATHLL+N  DLR IQ +LGH R+S+T+IYT+V S    D ++E +  
Sbjct: 262 PVS--PHSLRHAFATHLLNNKADLRVIQEMLGHSRISSTEIYTHVAS----DALIEKFHT 315

Query: 317 THP 319
            HP
Sbjct: 316 FHP 318


>gi|206900840|ref|YP_002251182.1| tyrosine recombinase XerD [Dictyoglomus thermophilum H-6-12]
 gi|206739943|gb|ACI19001.1| tyrosine recombinase XerD [Dictyoglomus thermophilum H-6-12]
          Length = 296

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 96/301 (31%), Positives = 156/301 (51%), Gaps = 17/301 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  L+ E+ +S  T+ SY  D   F+ FL    +E I I+ +++  +   R  ++  
Sbjct: 6   EDFLFYLKFEKNMSSATIDSYRRDLEDFINFL---QKEGINIKNLKREEWQ--RYLVALY 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +  KI  +S+ R +S I+SF+K+L +     ++    M   K    LP  L+ K+  +  
Sbjct: 61  KKYKI--KSIARKISSIRSFIKFLLREGYINKNYSNFMLIPKIPMYLPEVLDPKEIESF- 117

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
               L        +  RN AIL   Y  G+R+SE ++L  QN+  ++  +R  GKG+K R
Sbjct: 118 ----LKIPDPLSPLGIRNMAILETFYATGIRVSELVNLNIQNVDLEEKYVRCFGKGEKER 173

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVPL     +++  Y  +     N   +  LF   +G+ +        I+   + LGLP 
Sbjct: 174 IVPLGDYAVESLKRYLSVRHL-FNPKDKEALFLNKKGERITRQGVWFIIKAYSKILGLPK 232

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HT RHSFATHLLSNG D+R +Q +LGH  ++TTQIYT++ S      + E+Y + H
Sbjct: 233 KVSPHTFRHSFATHLLSNGADIRIVQELLGHSDIATTQIYTHIVSSK----LHEVYQRAH 288

Query: 319 P 319
           P
Sbjct: 289 P 289


>gi|117620205|ref|YP_857765.1| tyrosine recombinase XerD [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117561612|gb|ABK38560.1| tyrosine recombinase XerD [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 299

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 156/302 (51%), Gaps = 16/302 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ERGLS  T+ SY  D  +F    A + +E+     +  L   +I+ +++ R
Sbjct: 11  EPFLDALWLERGLSDNTVSSYRTDLEKF----ALWLDEQGGSLLLAGLD--DIQHYLAWR 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q+    S  R LS ++ F +YL + K+ ++   + +   K    LP  L+E +   L+
Sbjct: 65  VDQQFAASSTARFLSALRRFYQYLNREKLRSDDPTVLLEGPKLPKKLPSDLSEAEVEALL 124

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L+        ++ R+ A+L LLY  GLR+SE + LT +++   Q  +R+ GKG+K R
Sbjct: 125 QAPLVDEP-----LELRDKAMLELLYATGLRVSELVGLTAEHVSLRQGLVRVVGKGNKER 179

Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+       +  YY +     L       +F   + + +    F   I+   +  G+ 
Sbjct: 180 LVPMGEEAVHWLERYYREARTLLLGGTSSDVVFPSKQARMMTRQTFWHRIKLYAQRAGIQ 239

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  ++ Q 
Sbjct: 240 GELSPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVANER----LKALHGQH 295

Query: 318 HP 319
           HP
Sbjct: 296 HP 297


>gi|116619488|ref|YP_821644.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222650|gb|ABJ81359.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 303

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 97/307 (31%), Positives = 150/307 (48%), Gaps = 19/307 (6%)

Query: 17  ERQNWLQNLEIER-GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           ERQ  L   ++ R G S+ ++++YE D RQFL FL+           I  L    +R ++
Sbjct: 10  ERQIVLYLEDLARAGNSEHSIRAYESDLRQFLAFLSPPDLAPPAPAAIDLLI---LREWL 66

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +      +   +L+R L+ ++   ++L +  +   +    +R  K    LP  +   Q  
Sbjct: 67  AGLYRDDLSAVTLRRKLAAVRGLFRFLLREGVVPLNVACLVRTPKAPKKLPEVMTADQVN 126

Query: 136 TLVDNV---LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +L+D V    L   H      AR+ AI  LLYGCG+R+SE   L  ++I   +  LR++G
Sbjct: 127 SLIDGVGGVELERPHP-----ARDRAIFELLYGCGIRVSELAGLNLEDIDRTEGWLRVRG 181

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R VPL     +++  Y    P       Q  +F   R   L        ++    
Sbjct: 182 KGKKERQVPLPGQAAQSLERYLAERPVARE---QPAVFVNHRRARLTTRGISGIVKLYAT 238

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           YL        H+ RH++ATHLL++G DLR+IQ +LGH RLSTTQ YT V+  +    +M 
Sbjct: 239 YLSNDPGIHPHSFRHAYATHLLADGADLRAIQELLGHARLSTTQKYTQVSLTD----LMA 294

Query: 313 IYDQTHP 319
           +YD+ HP
Sbjct: 295 VYDKAHP 301


>gi|257869686|ref|ZP_05649339.1| site-specific recombinase [Enterococcus gallinarum EG2]
 gi|257803850|gb|EEV32672.1| site-specific recombinase [Enterococcus gallinarum EG2]
          Length = 299

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 150/309 (48%), Gaps = 22/309 (7%)

Query: 19  QNWLQN-----LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +N LQN     L +ERG S  T  +Y+ D   F  FL     E         + + ++R 
Sbjct: 3   ENELQNDFFRYLIVERGYSDKTKSAYQEDMEDFFRFLKESGNEDFLA-----IDHRDVRV 57

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++S    +     S+ R ++ ++SF  +L K ++  E+    +   KK+  LPR   EK+
Sbjct: 58  YLSFLNERNYSRNSISRKMASLRSFYHFLTKHEVIKENPFAYIHLKKKNAKLPRFFYEKE 117

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L ++V  H       +  RN A+L +LYG GLR+SE  +LT  ++  +   L I GK
Sbjct: 118 MEALFESVKGHEP-----LQQRNRALLEILYGSGLRVSECSNLTLSDVDWENGVLLIHGK 172

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           G+K R VP     ++A+ +Y       L   +      +F    G  +     +  + Q+
Sbjct: 173 GNKDRYVPFGSYAQEALRDYVSAGRQQLMEKHHKRHEIVFVNHLGDGITATGIEYVLNQI 232

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            R   L      H LRH+FATHLL++G D+R++Q +LGH  LSTTQIY +V      D +
Sbjct: 233 IRKSSLDSKIHPHMLRHTFATHLLNHGADMRTVQELLGHANLSTTQIYAHVTK----DSL 288

Query: 311 MEIYDQTHP 319
            + Y Q HP
Sbjct: 289 QKNYRQFHP 297


>gi|330959145|gb|EGH59405.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 298

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 147/308 (47%), Gaps = 30/308 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L +E+GLS  T  SY  D     +F  +  E  + + +        I   ++ R 
Sbjct: 11  QFLDALWLEKGLSDNTRDSYRSD---LALFNGWLQERNVDLPSA---GREVILDHLAWRV 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                 RS  R LSG + F +YL + K+      L +   +    LP++L+E        
Sbjct: 65  DNAYKPRSTARFLSGARGFYRYLLREKLIAIDPTLQIDMPQLGKPLPKSLSEADV----- 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL     ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K R+
Sbjct: 120 EALLAAPDLSEPIGQRDRAVLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179

Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           VP+           +R A  E     P D+       LF   RG  +    F   I+   
Sbjct: 180 VPMGEEAIVWVERYLRGARDELLGGKPSDV-------LFPSTRGDQMTRQTFWHRIKHQA 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+  S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + 
Sbjct: 233 TVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288

Query: 312 EIYDQTHP 319
           EI+ + HP
Sbjct: 289 EIHAKHHP 296


>gi|302185529|ref|ZP_07262202.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           syringae 642]
          Length = 298

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 151/309 (48%), Gaps = 32/309 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKR 78
            +L  L +E+GLS  T  SY  D     +F  +  E  +  I   R++    I   ++ R
Sbjct: 11  QFLDALWLEKGLSDNTRDSYRSD---LALFHGWLQERNVDLISAGREV----ILDHLAWR 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  RS  R LSG + F +YL + K+ +    L +   +    LP++L+E       
Sbjct: 64  VENAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADV---- 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL     ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K R
Sbjct: 120 -EALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKER 178

Query: 199 IVPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +VP+           +R A  E     P D+       LF   RG+ +    F   I+  
Sbjct: 179 LVPMGEESIVWVERYLRGARDELLGGKPSDV-------LFPSTRGEQMTRQTFWHRIKHQ 231

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+  S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        +
Sbjct: 232 ATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----L 287

Query: 311 MEIYDQTHP 319
            E++ + HP
Sbjct: 288 QEMHARHHP 296


>gi|220933239|ref|YP_002512138.1| tyrosine recombinase XerC [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994549|gb|ACL71151.1| tyrosine recombinase XerC [Thioalkalivibrio sp. HL-EbGR7]
          Length = 298

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 149/306 (48%), Gaps = 24/306 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L++L  ER  S  T+++Y  D R+           +        +   +IRA ++K   
Sbjct: 12  YLRHLREERRYSPHTVENYARDLRRLC---------EAVGDDWSSVKVHDIRALVAKEHR 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q  G ++L+R LS I+ F  YL +  +   +  L++R  K    LP  L+  Q   L+D 
Sbjct: 63  QGAGSKTLQRLLSAIRGFFNYLIREGVADANPALDVRAPKSGRKLPGVLDVDQVARLLDL 122

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                    + +  R+ AIL L Y  GLR++E + L   ++    + LR+ GKG K R +
Sbjct: 123 P------GDEALVVRDRAILELFYSSGLRLAELVGLDLVDVDLGDAQLRVTGKGRKARDL 176

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           P+    R A+       P    L    +  LF G RG+ L     Q  + +     GL  
Sbjct: 177 PI---GRHAVAALKAWLPMRAGLAAADEQALFVGQRGRRLGARAVQTRLARHAGLQGLDR 233

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRHSFA+HLL + GDLR++Q +LGH  +STTQ+YT+++ ++    + ++YD  H
Sbjct: 234 RVHPHLLRHSFASHLLESSGDLRAVQELLGHADISTTQVYTHLDYQH----LAKVYDAAH 289

Query: 319 PSITQK 324
           P   +K
Sbjct: 290 PRARRK 295


>gi|284008429|emb|CBA74880.1| tyrosine recombinase [Arsenophonus nasoniae]
          Length = 303

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 157/306 (51%), Gaps = 23/306 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + +E  L+  TL SY  D +  + +L+    + +T+  +      ++++F+++R
Sbjct: 14  EQFLDTIWLEHDLAANTLSSYRTDLQTLVGWLSRQGYDLLTVGVM------DLQSFLAER 67

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +Y  + K+ T+     +   K    LP+ LNEKQ     
Sbjct: 68  VEGGYKATSSARLLSAMRRLFQYFYREKLRTDDPTAQLSAPKLPKRLPKDLNEKQV---- 123

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LLH       I+ R+  +L +LY CGLR+SE + LT  +I   Q  +R+ GKG+K R
Sbjct: 124 -EDLLHAPTTQDPIELRDKTMLEVLYACGLRVSELVGLTLTDISLRQGVIRVVGKGNKER 182

Query: 199 IVPLLPSVRKAI--LEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +VPL     +AI  LE Y  +  P  LN      LF   RG  +    F   I+      
Sbjct: 183 LVPL---GEEAIYWLETYLTESRPILLNGLTNDVLFPSKRGTQMTRQTFWHRIKYYAAIA 239

Query: 255 GLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           G+  +  + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + ++
Sbjct: 240 GIDSAKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQL 295

Query: 314 YDQTHP 319
           + Q HP
Sbjct: 296 HQQHHP 301


>gi|295133714|ref|YP_003584390.1| tyrosine recombinase [Zunongwangia profunda SM-A87]
 gi|294981729|gb|ADF52194.1| tyrosine recombinase [Zunongwangia profunda SM-A87]
          Length = 299

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/309 (33%), Positives = 157/309 (50%), Gaps = 22/309 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF--YTEEKITI-QTIRQLSYTEIRAFI 75
           +++L  L++ERGLS  ++ SYE D  + + FL     +   +TI Q   QL   EI    
Sbjct: 8   KDYLTYLKLERGLSVNSISSYELDLIKLINFLKVKSISASPLTIDQETLQLFLYEI---- 63

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                +++  RS  R +SG+KSF  YL    I  +    N  +L ++  + R L E  ++
Sbjct: 64  ----AKELNSRSRARIISGLKSFFNYL----IFEDYRKDNPTDLIEAPKIGRKLPETISV 115

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
             +D  L+     TK    RN AI+  LYGCGLR+SE  +L   ++  ++  +++ GKGD
Sbjct: 116 EEIDE-LIAAIDLTKTEGERNRAIIETLYGCGLRVSELTNLRISDLYFEEGFIKVTGKGD 174

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R VP+     K I  Y D       +  +    LF   RG  L   +    IRQL   
Sbjct: 175 KQRFVPISDYNIKYITIYKDQVRAHQEIKPEASDTLFLNRRGAQLTRAMIFTIIRQLAEK 234

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    + HT RHSFATHLL NG DLR+IQ +LGH  ++TT+IY +++      ++ E+
Sbjct: 235 ANIRKKISPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEIYMHMDRT----YLREV 290

Query: 314 YDQTHPSIT 322
            +  HP  T
Sbjct: 291 LETYHPKKT 299


>gi|260913748|ref|ZP_05920224.1| tyrosine recombinase XerD [Pasteurella dagmatis ATCC 43325]
 gi|260632287|gb|EEX50462.1| tyrosine recombinase XerD [Pasteurella dagmatis ATCC 43325]
          Length = 301

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/302 (33%), Positives = 159/302 (52%), Gaps = 15/302 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L ++ IER LS+ T+QSY  D    L +L   +EE+    T+  L   +++ F+ +R T
Sbjct: 10  FLNDVWIERKLSQNTVQSYRLDLTALLQWLEKQSEEQPL--TLITLDAIDLQTFLGERLT 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     S  R LS I+   +YL + K  T+     + + K  + LP+ L E+Q   L++ 
Sbjct: 68  QGYKATSTARLLSAIRKLFQYLYREKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDLLNA 127

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             +        ++ R+ A++ LLY  GLR++E +SLT +NI  +Q  +R+ GKG+K RIV
Sbjct: 128 PDVDVP-----LELRDKAMMELLYATGLRVTELVSLTVENININQGIVRVIGKGNKERIV 182

Query: 201 PLLPSVRKAILEY--YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           P+       I ++  Y      LN      LF   R   +    F   I+       + L
Sbjct: 183 PIGEEATYWIRQFVLYGRTTL-LNGQSSDVLFPSKRAVQMTRQTFWHRIKHYALISEIDL 241

Query: 259 -STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            S + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++++ 
Sbjct: 242 NSLSPHVLRHAFATHLINHGADLRVVQMLLGHSDLSTTQIYTHVAKER----LKHLHERY 297

Query: 318 HP 319
           HP
Sbjct: 298 HP 299


>gi|307250820|ref|ZP_07532749.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
 gi|306857179|gb|EFM89306.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
          Length = 297

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 154/303 (50%), Gaps = 18/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L  E GLS+ T  +Y  D   F       +E   T +    L + +++AF+ +R
Sbjct: 9   EQFLDTLWQEHGLSENTSAAYRLDLESF-------SEWLPTPKAFLTLDHFDLQAFLGER 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++ F ++L       +   L + + +K   LP++L+E+Q + L+
Sbjct: 62  LELGYKATSSARMLSCLRKFFRFLYTENYRQDDPTLTLTSPRKPAHLPKSLSEEQVMDLL 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D     + +    I+ R+ A+L LLY  GLR+SE +SL+  N+   Q  +R+ GKGDK R
Sbjct: 122 D-----SPNTLDPIELRDKAMLELLYATGLRVSELVSLSIDNLSLRQGVVRVVGKGDKER 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+       I E++      L  N+Q  + F   RG+ +    F   I+      G+ 
Sbjct: 177 LVPIGEEAGYWIQEFFRYGRAILLNNLQSDVVFPSRRGQQMTRQTFWHRIKHYAVLAGID 236

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V        +  ++ Q
Sbjct: 237 SEKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR----LKSLHQQ 292

Query: 317 THP 319
            HP
Sbjct: 293 FHP 295


>gi|170781657|ref|YP_001709989.1| site-specific tyrosine recombinase XerD [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169156225|emb|CAQ01367.1| putative XerD-family recombinase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 328

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/325 (29%), Positives = 156/325 (48%), Gaps = 24/325 (7%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           +  PE V   L +    WL+++E+ERGLS+ T+Q+Y  D  ++   LA        +   
Sbjct: 14  DTAPE-VPVALRRAVDRWLRHVEVERGLSRNTIQAYRRDLARYTAHLAAEG-----VADP 67

Query: 64  RQLSYTEIRAFISKRRTQKIGD---RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
              +   +  F  + R  + G     SL R LS ++SF ++L +  I         +  K
Sbjct: 68  ADATSAHVAGFAQRVRDPEQGGLTASSLARMLSSVRSFHRFLVEEGIVEVDVSAEQKPPK 127

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
             + LP+A++ +    ++D      +   + +  R+ A+L LLY  G R+SE  +LT  +
Sbjct: 128 LPSRLPKAVSVETMGRILD-----ATDGDEPLRVRDKALLELLYATGARVSEITALTVDD 182

Query: 181 IMDDQST----LRIQGKGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLP-LFRGIR 234
           ++         +R+ GKG K RIVP+    R+A+  Y   + P         P LF G+R
Sbjct: 183 VLGPDGAAAEIVRVVGKGGKQRIVPVGSFARRAVDAYLVRVRPILAARGSATPALFLGLR 242

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G  L+       I+      G+    + H  RHSFATHL++ G D+R +Q +LGH  ++T
Sbjct: 243 GHALSRQNAWLVIKAAAERAGVTEEISPHIFRHSFATHLIAGGADVRVVQELLGHSSVAT 302

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHP 319
           TQIYT V      D + ++Y   HP
Sbjct: 303 TQIYTRVTV----DTLRDVYTTAHP 323


>gi|25028473|ref|NP_738527.1| site-specific tyrosine recombinase XerC [Corynebacterium efficiens
           YS-314]
 gi|34222795|sp|Q7ZAK0|XERC_COREF RecName: Full=Tyrosine recombinase xerC
 gi|23493758|dbj|BAC18727.1| putative phage integrase/recombinase XerC [Corynebacterium
           efficiens YS-314]
          Length = 310

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 153/307 (49%), Gaps = 21/307 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ++L+  +++   L +  G S  T++ Y  D R              TI  + + +   +R
Sbjct: 23  QMLEAIEDFCDYLILVVGRSDATVRGYRSDLRHM----------AATIPDLTEFTLPNLR 72

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           A++ +   +     +L R  + +KSF  +  K  + +      + + K + +LPR L E 
Sbjct: 73  AWLGRAVEEGKSRATLARRTASVKSFSTWAVKNGLISGDEAARLVSPKVTRNLPRVLGEV 132

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           QA   + +    T  E +    R+SAIL LLY  G+R+SE   L   ++   +  +R+ G
Sbjct: 133 QAGEFMGSAAADTEDEFR----RDSAILELLYATGMRVSELCGLDLGDVDHHRRMVRVLG 188

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KGDK R++P   +   A+ ++  L   D    ++  +F G+RG  ++    +R + +  +
Sbjct: 189 KGDKERMIPFGKAAADALEQW--LEARDRMAKVEDAMFVGVRGGRIDARQIRRIVDRTAQ 246

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G     + H+LRH+ ATHLL  G DLR +Q +LGH  L TTQIYT+V+S+     ++E
Sbjct: 247 VAGAD-HLSPHSLRHTAATHLLDGGADLRQVQEMLGHSSLQTTQIYTHVSSQR----LLE 301

Query: 313 IYDQTHP 319
            + Q HP
Sbjct: 302 AFRQAHP 308


>gi|313206906|ref|YP_004046083.1| tyrosine recombinase xerd [Riemerella anatipestifer DSM 15868]
 gi|312446222|gb|ADQ82577.1| tyrosine recombinase XerD [Riemerella anatipestifer DSM 15868]
 gi|325335657|gb|ADZ11931.1| XerD [Riemerella anatipestifer RA-GD]
          Length = 303

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 160/303 (52%), Gaps = 15/303 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q++   L+ E+ LS  T+ +Y  D ++    L ++ E K+   +   +SY +I+ ++ + 
Sbjct: 8   QDFANALKFEKNLSNNTIDAYTRDIKK----LQYFAENKLNDTSALDISYEQIQEYLYQI 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                 +RS  R +S IK+F K+L + ++  ++    +   K    LP  L+ ++  +L+
Sbjct: 64  SKNYTNERSQSRWISSIKAFFKFLHEDELRADNPARLLETPKLGLYLPDTLSFEEIESLI 123

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           + +      +T  +  RN  I+  LYGCGLR+SE + L   N+  ++  + + GKG K R
Sbjct: 124 EAI-----DKTTSLGKRNHTIIETLYGCGLRVSELVELKISNLNFEEEFIIVDGKGGKTR 178

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL     + I +Y      ++ +N +    LF   RG  L   +    I+ L     +
Sbjct: 179 LVPLAQYTAELIKDYLLEVRSEIKINPKHSDILFLNRRGSKLTRVMVFIIIKDLALQANI 238

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HT RHSFATHLL NG DLR IQ +LGH  ++TT+IYT++++++  + +M    +
Sbjct: 239 KKNISPHTFRHSFATHLLKNGADLRYIQEMLGHSSITTTEIYTHLDNEDLRETIM----K 294

Query: 317 THP 319
            HP
Sbjct: 295 YHP 297


>gi|190150873|ref|YP_001969398.1| tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|307264224|ref|ZP_07545815.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
 gi|189916004|gb|ACE62256.1| tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|306870470|gb|EFN02223.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
          Length = 297

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 153/303 (50%), Gaps = 18/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L  E GLS+ T  +Y  D   F       +E   T +    L + +++AF+  R
Sbjct: 9   EQFLDTLWQEHGLSENTSAAYRLDLESF-------SEWLPTPKAFLTLDHFDLQAFLGGR 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++ F ++L       +   L + + +K   LP++L+E+Q + L+
Sbjct: 62  LELGYKATSSARMLSCLRKFFRFLYTENYRQDDPTLTLTSPRKPAHLPKSLSEEQVMDLL 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D     + +    I+ R+ A+L LLY  GLR+SE +SL+  N+   Q  +R+ GKGDK R
Sbjct: 122 D-----SPNTLDPIELRDKAMLELLYATGLRVSELVSLSIDNLSLRQGVVRVVGKGDKER 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+       I E++      L  N+Q  + F   RG+ +    F   I+      G+ 
Sbjct: 177 LVPIGEEAGYWIQEFFQYGRAILLNNLQSDVVFPSRRGQQMTRQTFWHRIKHYAVLAGID 236

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V        +  ++ Q
Sbjct: 237 SEKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR----LKSLHQQ 292

Query: 317 THP 319
            HP
Sbjct: 293 FHP 295


>gi|261417849|ref|YP_003251531.1| site-specific tyrosine recombinase XerD [Geobacillus sp. Y412MC61]
 gi|297529517|ref|YP_003670792.1| tyrosine recombinase XerD [Geobacillus sp. C56-T3]
 gi|319767339|ref|YP_004132840.1| tyrosine recombinase XerD [Geobacillus sp. Y412MC52]
 gi|261374306|gb|ACX77049.1| tyrosine recombinase XerD [Geobacillus sp. Y412MC61]
 gi|297252769|gb|ADI26215.1| tyrosine recombinase XerD [Geobacillus sp. C56-T3]
 gi|317112205|gb|ADU94697.1| tyrosine recombinase XerD [Geobacillus sp. Y412MC52]
          Length = 298

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/306 (31%), Positives = 157/306 (51%), Gaps = 16/306 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E +++L  L +ER L+  T+ SYE D ++++ +L     +   +Q   ++    I  F+ 
Sbjct: 4   ELKDFLHYLTVERNLAHNTIVSYERDLKKYVRYL----RQVEQLQAWGEVERLHILHFLK 59

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               Q    R++ R L+ I+SF ++L + KI  +   +++   +   +LP+ L+ ++   
Sbjct: 60  FLSEQGQSARTIARHLASIRSFHQFLLREKIAAQDPTVHIETPQFERTLPKVLSVEEV-- 117

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
                LL     +     R+ A+L LLY  G+R+SE + L   ++      +R  GKG K
Sbjct: 118 ---EALLAAPQVSTPFGLRDKAMLELLYATGMRVSELVQLNLADVHLTMGFVRCYGKGRK 174

Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRY 253
            RIVP+     +A+  Y +   P  +N   +    LF    G+ L    F + +++L + 
Sbjct: 175 ERIVPIGRMAIEALAHYLERGRPQLVNPRRRATEALFLNHYGQRLTRQGFWKILKRLAKE 234

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V      D    +
Sbjct: 235 AGIEKELTPHTLRHSFATHLLENGADLRAVQELLGHADISTTQMYTHVTKTRLKD----V 290

Query: 314 YDQTHP 319
           Y Q HP
Sbjct: 291 YKQYHP 296


>gi|160896902|ref|YP_001562484.1| integrase family protein [Delftia acidovorans SPH-1]
 gi|160362486|gb|ABX34099.1| integrase family protein [Delftia acidovorans SPH-1]
          Length = 365

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 150/316 (47%), Gaps = 30/316 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+++ +++ L+  T   Y  D  +         +E + +Q         IR F+++  +
Sbjct: 35  YLEHVRVQKRLADRTCALYALDMARLCTMARDAGQELLALQP------AHIRRFVAQMHS 88

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +    R +   LSG +SF ++  ++ +   + +  +R  K    LP+AL    A+ L   
Sbjct: 89  RGRSPRGIALILSGWRSFFRWAAQQSLVPFNPVEGVRGPKAPKPLPKALGVDDAVQLA-- 146

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR----------- 189
                +    WI+AR++AI  LLY CGLR+ E + L      D Q   R           
Sbjct: 147 -AFSNAEADPWIEARDAAITELLYSCGLRVGELVGLDVAPGQDTQRQGRGWIDLQAADAH 205

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDL------CPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           +QGKG K R VP+  +  +A+  +  L          L  + +  LF G RG+ L     
Sbjct: 206 VQGKGGKRRTVPVGAAALQALQRWLALRETGLAGAAALAAHHESALFIGRRGERLGAQSV 265

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              +RQ  +  GL      H LRHSFA+H+L + GDLR++Q +LGH  +STTQIYT ++ 
Sbjct: 266 WTRLRQRGQQAGLSAGVHPHVLRHSFASHMLQSSGDLRAVQELLGHASISTTQIYTRLDF 325

Query: 304 KNGGDWMMEIYDQTHP 319
           ++    + + Y+  HP
Sbjct: 326 QH----LAQAYENAHP 337


>gi|39996918|ref|NP_952869.1| integrase/recombinase XerD [Geobacter sulfurreducens PCA]
 gi|39983806|gb|AAR35196.1| integrase/recombinase XerD [Geobacter sulfurreducens PCA]
          Length = 295

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/303 (32%), Positives = 158/303 (52%), Gaps = 21/303 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +E+GL++ +++SY  D  ++L ++  +         IR L   +   F++  + 
Sbjct: 8   FLGYLVVEKGLARNSVESYARDLSRYLGYVEQHAGGDPA--AIRPLHVAD---FLAHLKE 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYL--KKRKITTESNILNM-RNLKKSNSLPRALNEKQALTL 137
             +G RS  R+LS ++ F ++L  +    T  ++I+   R L K   LP+ L  ++    
Sbjct: 63  SGLGARSRARALSAVRMFHRFLLVEGYAETNPTSIIEAPRVLAK---LPQVLTGREV--- 116

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
              +LL        I+ R+ A+L LLY  GLR+SE + L  +++      L   GKG+K 
Sbjct: 117 --EMLLAAPAGDAPIEVRDRAMLELLYATGLRVSELVGLRTRDVNTSAGYLMTVGKGEKE 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  S   A++ Y       L    + P LF    G+ +    F   I++  R  G+
Sbjct: 175 RLVPMGESACAAVVLYLSSARIQLGRGGESPFLFLSRLGERMTRQAFWNIIKKRSRQAGI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRHSFATHLL NG DLRS+Q++LGH  LSTTQIYT+V  +     +  +++Q
Sbjct: 235 LKGISPHTLRHSFATHLLENGADLRSVQAMLGHADLSTTQIYTHVTRER----LKRLHEQ 290

Query: 317 THP 319
            HP
Sbjct: 291 FHP 293


>gi|19553231|ref|NP_601233.1| site-specific tyrosine recombinase XerC [Corynebacterium glutamicum
           ATCC 13032]
 gi|62390867|ref|YP_226269.1| site-specific tyrosine recombinase XerC [Corynebacterium glutamicum
           ATCC 13032]
 gi|41326206|emb|CAF20368.1| SITE-SPECIFIC RECOMBINASE [Corynebacterium glutamicum ATCC 13032]
          Length = 315

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 158/300 (52%), Gaps = 21/300 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++ ++L++  G S  T++ Y  D    L  +A       TI+ I   S   +R ++    
Sbjct: 35  DFCEHLDLVVGRSAATIRGYRSD----LYAMAD------TIEDIDNFSLPTLRQWLGIAV 84

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +     +L R  + +K+F  + +K           + + K +  LP+ L E+QA   V+
Sbjct: 85  DEGKSRATLARRTASVKAFSSWAQKNGHLKADEAARLISPKITRDLPKILGEQQAGDFVE 144

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           N    +++E +++  R+SAIL LLY  G+R++E   +   +I  D+  +R+ GKG+K R+
Sbjct: 145 NAA--STNEEEFL--RDSAILELLYATGMRVAELCGIDLSDIDYDRKMVRVLGKGNKERV 200

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VP   S  KA+  + D+   D        LF G+RG+ +N    +R + +  +  G+   
Sbjct: 201 VPFGESAHKALRNWLDV--RDEMTEDPKALFVGVRGQRINARQVRRIVDRAAKVTGVD-H 257

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + H+LRH+ ATHLL  G DLR +Q +LGH  + TTQIYT+V++K     ++E +++ HP
Sbjct: 258 LSPHSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNKR----LLEAFNKAHP 313


>gi|291286773|ref|YP_003503589.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290883933|gb|ADD67633.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 312

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 160/310 (51%), Gaps = 24/310 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ ++ E+G S  T+++Y  D     ++L     E   I  I+   +  +R F++    
Sbjct: 19  FLKFMQQEKGASDHTIKNYSRDLADLCMYL-----EDSAIDDIQDADFFTLRGFVAMLFD 73

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   +++R ++ +KSF  +++K+  T ++    ++  KK     +  N    + L+D 
Sbjct: 74  KGLAKSTIERKIACLKSFFAFMQKKNHTDDNPARMLKFPKKEQKAFKVFNIDSIIALLD- 132

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--QGKGDKIR 198
                  + K    R++ I  L+YG G+R+SE + L   +I  D   +RI  +GKG K R
Sbjct: 133 ----APDKDKPAGMRDALIQELMYGTGVRVSELVGLNLSDI--DFGGMRILVRGKGKKER 186

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYL 254
           IVP+     + I +Y D+   D+  N  LP    +F    G  L     +R + +  +  
Sbjct: 187 IVPIADMHIEMINDYLDV-KMDI-CNGYLPDNEAIFINKFGSRLTDRSVRRIVEKYLKIA 244

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           GLP+  + H+ RHS+ATHLL  G DLR+IQS+LGH  L+TTQ YT++N       ++ +Y
Sbjct: 245 GLPMDFSPHSFRHSYATHLLEGGADLRTIQSLLGHESLTTTQKYTHLNLTE----LLRVY 300

Query: 315 DQTHPSITQK 324
           D THP  + K
Sbjct: 301 DATHPFASGK 310


>gi|86140290|ref|ZP_01058849.1| putative site-specific recombinase [Leeuwenhoekiella blandensis
           MED217]
 gi|85832232|gb|EAQ50681.1| putative site-specific recombinase [Leeuwenhoekiella blandensis
           MED217]
          Length = 298

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 156/300 (52%), Gaps = 14/300 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  LE+ER  SK T+ +Y+ D   F +FL     E   ++  +++SY  +RA+I     
Sbjct: 6   FINYLELERKYSKHTVLAYQKDLEAFFLFL----NEHYAVEDPKEVSYVYVRAWIVHLTD 61

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS+ R +S +K+F K+L+K      S +   ++LK    +    +E +  T++  
Sbjct: 62  VGVSHRSINRKISSLKAFFKFLQKTGDIEVSPLAKHKSLKIKKEIQVPFSETEVNTVIK- 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +L +  +  + + R+ AI+ L Y  G+R SE ++L   +I  DQ  +++ GK +K RI+
Sbjct: 121 -MLQSGED--FSELRDLAIVTLFYATGMRRSELINLKVADIDFDQHNIKVLGKRNKERII 177

Query: 201 PLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           PL+P +   + +Y  +   + ++ N    L    +G  L      R I +          
Sbjct: 178 PLIPWLEDGLKKYLSVRENYGVDKNSGFLLLTD-KGDKLYETFVCRIINRYFSRASQKTK 236

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           T+ H LRH+FATHLL+NG DL +++ +LGH  L++TQ+YT+ +    G     +Y   HP
Sbjct: 237 TSPHMLRHTFATHLLNNGADLNAVKELLGHASLASTQVYTHTSIAELG----RVYKNAHP 292


>gi|218283546|ref|ZP_03489536.1| hypothetical protein EUBIFOR_02126 [Eubacterium biforme DSM 3989]
 gi|218215814|gb|EEC89352.1| hypothetical protein EUBIFOR_02126 [Eubacterium biforme DSM 3989]
          Length = 291

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/291 (31%), Positives = 150/291 (51%), Gaps = 24/291 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSLKR 90
           S+ T++SY+ D  QF        +E +T Q+I      +   F++   T   +   S+ R
Sbjct: 19  SEKTIESYKNDLNQF--------KEYLTSQSIDSFESCDRLTFMNFLATLDHLKASSIAR 70

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--LLHTSHE 148
            +S  +SF  YL +     E+ ++ ++  KKS  +P  L        V+ +   L++ ++
Sbjct: 71  KMSVYRSFYTYLAEYMGIIENPLIGIQTPKKSKQIPDFL-------FVEEIQEFLNSYND 123

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
            K  + R+  +  ++Y CGLR+SE ++L  + I  +   + I+GKGDK RIVP      K
Sbjct: 124 EKDDEYRDRILFTIMYACGLRVSECVNLEWKQIDLNNRIVHIRGKGDKDRIVPFYQGFEK 183

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            +LEY     F     I   +F  ++GK L+    Q  + +    +G+ +    H LRHS
Sbjct: 184 ELLEY--KSKFWTKYAIDDHVFVNLKGKSLSSRGVQYLMDKHATKIGMHMKLHPHMLRHS 241

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           FATHLL NG D+R +Q +LGH  LSTTQIYT+V +      +++ Y + HP
Sbjct: 242 FATHLLDNGADIRVVQELLGHSSLSTTQIYTHVTTAQ----LVKAYKKAHP 288


>gi|227890941|ref|ZP_04008746.1| site-specific recombinase XerD [Lactobacillus salivarius ATCC
           11741]
 gi|227867350|gb|EEJ74771.1| site-specific recombinase XerD [Lactobacillus salivarius ATCC
           11741]
          Length = 298

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 155/296 (52%), Gaps = 25/296 (8%)

Query: 21  WLQNLE----IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           W++  +    IE+  S  TL++Y  D + F+ F+    +E    ++ +++   ++ A++S
Sbjct: 5   WIEEFKKYLLIEKQYSDETLKAYSEDLQHFVDFI----DETGGAKSFKEIGSNDVHAYMS 60

Query: 77  KRRTQKIGDR----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
                 + DR    S+ R +S +++F  +L K ++T E+    ++  +   SLPR   EK
Sbjct: 61  Y-----LYDRYEMTSISRMISSLRAFYNFLIKNELTDENPFAYVQLKRHPRSLPRFFYEK 115

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L +     T  +T+ +  R+ A+L  LYG G+R+SE   L  +++      + + G
Sbjct: 116 EMTALFEA----TEGDTQML-IRDRALLESLYGTGMRVSECTGLKMESVDLTNKKMLLHG 170

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQ 249
           KGDK R+VP     ++A+  Y++     L          +F    G PL P      ++Q
Sbjct: 171 KGDKDRLVPFGSYCQEALQRYFEQTRTPLMEKYHRDHDLVFVNHYGNPLTPAGVAYILKQ 230

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           + +   L  S   H LRH+FATHL+SNG DLR++Q +LGH  LSTTQIYT+V  ++
Sbjct: 231 IVKRSSLHTSIHPHELRHTFATHLMSNGADLRAVQELLGHSSLSTTQIYTHVTPEH 286


>gi|222151393|ref|YP_002560549.1| site-specific tyrosine recombinase XerD [Macrococcus caseolyticus
           JCSC5402]
 gi|222120518|dbj|BAH17853.1| site-specific tyrosine recombinase XerD [Macrococcus caseolyticus
           JCSC5402]
          Length = 295

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 153/300 (51%), Gaps = 15/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  + IE+GLS+ T+ +Y  D   +  FL     E+  I +I  +    I  F+ K + 
Sbjct: 8   FLHFIMIEKGLSENTIAAYRRDLNHYKKFL-----EESHIGSIDNIDRFTISLFLGKLKD 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                ++L R  + ++ F ++  + K   +   + +   K    LP  L  ++      +
Sbjct: 63  DGKSSKTLARVTASVRGFHQFALREKYAVKDPTIILEPPKFERKLPGILTVEEV-----D 117

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           + L +   +K    R+ A+L LLY  G+R+SE ++L   ++      +++ GKG+K RIV
Sbjct: 118 IFLSSPDTSKVTGRRDQAMLELLYATGMRVSELINLDVADVNTIMGFVKVTGKGNKERIV 177

Query: 201 PLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+   + K +  Y        L   +   LF    GK +    F + ++Q++   G+   
Sbjct: 178 PIGTHMIKLMDAYIANTRHKMLKKEMTDSLFLNFHGKRMTRQGFWKIMKQVQAESGIQKK 237

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T HTLRHSFATHLL NG DLR++Q +LGH  +S+TQ+YT++++K     + E+Y  THP
Sbjct: 238 LTPHTLRHSFATHLLENGADLRAVQEMLGHADISSTQLYTHIDTKQ----IREVYKNTHP 293


>gi|34222908|sp|Q8NNZ9|XERC_CORGL RecName: Full=Tyrosine recombinase xerC
 gi|21324798|dbj|BAB99421.1| Integrase [Corynebacterium glutamicum ATCC 13032]
          Length = 308

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 158/300 (52%), Gaps = 21/300 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++ ++L++  G S  T++ Y  D    L  +A       TI+ I   S   +R ++    
Sbjct: 28  DFCEHLDLVVGRSAATIRGYRSD----LYAMAD------TIEDIDNFSLPTLRQWLGIAV 77

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +     +L R  + +K+F  + +K           + + K +  LP+ L E+QA   V+
Sbjct: 78  DEGKSRATLARRTASVKAFSSWAQKNGHLKADEAARLISPKITRDLPKILGEQQAGDFVE 137

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           N    +++E +++  R+SAIL LLY  G+R++E   +   +I  D+  +R+ GKG+K R+
Sbjct: 138 NAA--STNEEEFL--RDSAILELLYATGMRVAELCGIDLSDIDYDRKMVRVLGKGNKERV 193

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VP   S  KA+  + D+   D        LF G+RG+ +N    +R + +  +  G+   
Sbjct: 194 VPFGESAHKALRNWLDV--RDEMTEDPKALFVGVRGQRINARQVRRIVDRAAKVTGVD-H 250

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + H+LRH+ ATHLL  G DLR +Q +LGH  + TTQIYT+V++K     ++E +++ HP
Sbjct: 251 LSPHSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNKR----LLEAFNKAHP 306


>gi|257487154|ref|ZP_05641195.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331009225|gb|EGH89281.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 298

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 151/308 (49%), Gaps = 32/308 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKRR 79
           +L  L +E+GLS  T  SY  D     +F  +  E  + + +  R++    I   ++ R 
Sbjct: 12  FLDALWLEKGLSDNTRDSYRSD---LALFNGWLQERNVDLPSAGREV----ILDHLAWRV 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                 RS  R LSG + F +YL + K+ +    L +   +    LP++L+E        
Sbjct: 65  ENAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADV----- 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL     ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K R+
Sbjct: 120 EALLAAPDLSEAIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179

Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           VP+           +R A  E     P D+       LF   RG  +    F   I+   
Sbjct: 180 VPMGEEAIVWVERYLRGARDELLGGKPSDV-------LFPSTRGDQMTRQTFWHRIKHQA 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+  S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + 
Sbjct: 233 TVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288

Query: 312 EIYDQTHP 319
           E++ + HP
Sbjct: 289 EMHAKHHP 296


>gi|255349272|ref|ZP_05381279.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis 70]
 gi|255503808|ref|ZP_05382198.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis 70s]
          Length = 300

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/299 (32%), Positives = 159/299 (53%), Gaps = 24/299 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L ++RG+S L++Q+Y  D   FL        ++ +I+   +++   +  F+ K    K  
Sbjct: 19  LSVDRGISPLSVQAYCQDVLLFL--------QRASIEATDRINQESVFLFVEKCHKAKES 70

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           + +L R L  +K F  +LK  K+  +   +    + K   LP  L+ ++  +L+D  L  
Sbjct: 71  ETTLARRLIALKVFFHFLKDAKMLDQQPFIEHPKIWKR--LPSILSTEEVNSLLDQPLNI 128

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            + +T  I +R++AILY  Y  G+R+SE   L   +I DD   +R+ GKG K R+VP+  
Sbjct: 129 PNLDTH-IASRDAAILYTFYATGIRVSELCDLCIGDISDD--FIRVTGKGRKTRLVPISI 185

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
             ++AI  Y  L  F   L  + P    +F  IRGK L+     + I    + +      
Sbjct: 186 KAKQAIDAY--LSSFRDELQKKNPSEEHIFLSIRGKKLDRSCVWKRITFYAKLVTTK-RI 242

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           + H+LRH+FATHLL+N  DLR IQ +LGH R+S+T+IYT+V S++    ++E +   HP
Sbjct: 243 SPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASES----LIEKFHTYHP 297


>gi|110597063|ref|ZP_01385352.1| Phage integrase:Phage integrase, N-terminal SAM-like [Chlorobium
           ferrooxidans DSM 13031]
 gi|110341254|gb|EAT59719.1| Phage integrase:Phage integrase, N-terminal SAM-like [Chlorobium
           ferrooxidans DSM 13031]
          Length = 336

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/328 (30%), Positives = 164/328 (50%), Gaps = 21/328 (6%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQTIRQLS 67
           I + E  K   ++L  L   + LS  TL++Y  D  Q+  FL  +   + +    + Q+ 
Sbjct: 11  IPAAEEYKPLGDFLSALRSRKNLSPNTLKAYRGDLIQYFSFLLHHFRLDDLNGFALEQVK 70

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
             ++R F+     + +  RS+ R L+ +KSF +Y ++    T S    +   +    +P 
Sbjct: 71  AVDVRLFMGALIERGVKPRSIARKLASVKSFYRYQQETGKITGSLFSFIATPRYPKRVPA 130

Query: 128 ALNEKQALTLVDNVLL----------HTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
            L E+Q   L +  L            +  E +++  R+ +IL LLY CGLR+SE   LT
Sbjct: 131 FLTEQQTEKLFNEELSSGRAPFRQSEKSPIEEEFVSERDRSILELLYSCGLRVSELTGLT 190

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP--FDLNLNIQLP----LFR 231
              +  D   +++ GKG K RIVP+  +  +A+ +Y+++    F ++L  +      +F 
Sbjct: 191 TDRLDLDGGYVKLTGKGRKQRIVPVGGAALQALKKYFEVRRNFFRISLKGRAESINYVFV 250

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
             +GK L P + QR  R+    +        H LRHSFATHLL++G DL S+  +LGH  
Sbjct: 251 TKKGKQLYPMLVQRLTRKYLVSVTEQKQKNPHILRHSFATHLLNSGADLTSVSEMLGHSN 310

Query: 292 LSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           LSTT+IYT+V      D + E+Y + HP
Sbjct: 311 LSTTEIYTHVTF----DRLKEVYRKAHP 334


>gi|77457252|ref|YP_346757.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens
           Pf0-1]
 gi|77381255|gb|ABA72768.1| integrase/recombinase [Pseudomonas fluorescens Pf0-1]
          Length = 298

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/309 (32%), Positives = 154/309 (49%), Gaps = 32/309 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKR 78
            +L  L +E+GLS  T  +Y  D     +F  +  ++ +  I   R+L    I   ++ R
Sbjct: 11  QFLDALWLEKGLSDNTRDAYRSD---LALFNGWLQDKGLELINAGREL----ILDHLAWR 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q    RS  R LSG++ F +YL + K+ +    L +   +    LP++L+E       
Sbjct: 64  LEQNYKPRSTARFLSGVRGFYRYLLREKLISVDPTLRVDMPQLGRPLPKSLSEADV---- 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL     ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K R
Sbjct: 120 -EALLKAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKER 178

Query: 199 IVPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +VP+           +R    E     P D+       LF   RG+ +    F   I+  
Sbjct: 179 LVPMGEEAIVWVERYLRDGRGELLGGRPSDV-------LFPSQRGEQMTRQTFWHRIKHQ 231

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  G+  S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        +
Sbjct: 232 AKVAGISKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----L 287

Query: 311 MEIYDQTHP 319
            +++ + HP
Sbjct: 288 QDLHAKHHP 296


>gi|289525911|emb|CBJ15393.1| integrase/recombinase [Chlamydia trachomatis Sweden2]
 gi|296435499|gb|ADH17677.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           E/150]
          Length = 300

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/299 (32%), Positives = 159/299 (53%), Gaps = 24/299 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L ++RG+S L++Q+Y  D   FL        ++ +I+   +++   +  F+ K    K  
Sbjct: 19  LSVDRGISPLSVQAYCQDVLLFL--------QRASIEATDRINQESVFLFVEKCHKAKES 70

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           + +L R L  +K F  +LK  K+  +   +    + K   LP  L+ ++  +L+D  L  
Sbjct: 71  ETTLARRLIALKVFFHFLKDAKMLDQQPFIEHPKIWKR--LPSILSTEEVNSLLDQPLNI 128

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            + +T  I +R++AILY  Y  G+R+SE   L   +I DD   +R+ GKG K R+VP+  
Sbjct: 129 PNLDTH-IASRDAAILYTFYATGIRVSELCDLCIGDISDD--FIRVTGKGRKTRLVPISI 185

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
             ++AI  Y  L  F   L  + P    +F  IRGK L+     + I    + +      
Sbjct: 186 KAKQAIDAY--LSSFRDELQKKNPSEEHVFLSIRGKKLDRSCIWKRITFYAKLVTTK-RI 242

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           + H+LRH+FATHLL+N  DLR IQ +LGH R+S+T+IYT+V S++    ++E +   HP
Sbjct: 243 SPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASES----LIEKFHTYHP 297


>gi|257068193|ref|YP_003154448.1| site-specific recombinase XerD [Brachybacterium faecium DSM 4810]
 gi|256559011|gb|ACU84858.1| site-specific recombinase XerD [Brachybacterium faecium DSM 4810]
          Length = 332

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/326 (30%), Positives = 159/326 (48%), Gaps = 38/326 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +  +L +ERG S+ T+++Y  +    L  L   T E+IT+    +L  T +R+++S R  
Sbjct: 16  FADHLHLERGRSEHTVRAYRREAAGLLAHL--RTVERITLP---ELDVTALRSWLSARAE 70

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                 +L RS + +++F  +L             +R  ++   LP  L   QA  L+D 
Sbjct: 71  TGASASTLARSAASVRTFTTWLASTGRIPHDVGGRLRAPRRGRHLPTVLTGDQAGELLDG 130

Query: 141 VLLHTSHET----KWIDA---------------RNSAILYLLYGCGLRISEALSLTPQNI 181
           +      ++    + I A               R++A+L LLY  GLR+SE ++L    I
Sbjct: 131 LDGSARDDSAAPPREIAAAPRAEQDPRDRAVLLRDAAVLELLYSSGLRVSELVALDRSRI 190

Query: 182 MDDQSTLRIQGKGDKIRIVPL-LPSVRKAILEYYDLCPFDLNLNIQLP-------LFRGI 233
                T+R++GKGD+ RIVP+ LP++    L+ ++     + L    P       LF G+
Sbjct: 191 DRQHGTVRVRGKGDRERIVPVGLPALEA--LQRWESEGRPVLLAAATPGTPPGDALFLGV 248

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           RG  L     +  + +     G+    T HTLRHS ATHL+  G DLRS+Q  LGH  L+
Sbjct: 249 RGGRLGDRAVRTLVDRHVAEAGISRHVTPHTLRHSAATHLVEGGADLRSVQDFLGHSSLA 308

Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHP 319
           TTQIYT+V+++     +    DQ HP
Sbjct: 309 TTQIYTHVSAER----LRRTVDQAHP 330


>gi|158521685|ref|YP_001529555.1| tyrosine recombinase XerD [Desulfococcus oleovorans Hxd3]
 gi|158510511|gb|ABW67478.1| tyrosine recombinase XerD [Desulfococcus oleovorans Hxd3]
          Length = 297

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/306 (31%), Positives = 157/306 (51%), Gaps = 25/306 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR- 78
            ++  L IE+GL++ +L++Y  D   +L +L          Q I ++S T++   +    
Sbjct: 10  QYMSYLLIEKGLAENSLEAYGSDLAAYLDYL--------KAQNIDRVSETDMPVLLKYLI 61

Query: 79  --RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             R + +  RS  R L  ++ F +YL + K+   S    +   KK   LP  L+      
Sbjct: 62  FLRDRGLNKRSRSRHLVTLRGFYRYLAQEKVLAFSPAETIDLPKKGLRLPDVLS------ 115

Query: 137 LVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
            VD V  LL     T     R++A++ L+Y  GLR+SE +++  Q++  +   +R+ GKG
Sbjct: 116 -VDEVKKLLAAPDTTTARGMRDAAMIELMYAAGLRVSELVAMKVQDVNTEVCFVRVFGKG 174

Query: 195 DKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            K R+VP+    ++ +  Y     P  L     L LF   RG+P+    F + +++    
Sbjct: 175 AKERVVPMGAYAKEKLEAYLSGARPALLKNYASLFLFVAWRGRPMTRQGFWKALKKYGLA 234

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+  S   HTLRHSFA+HLL  G DLRS+Q +LGH  +STTQIYT+V  ++    + + 
Sbjct: 235 AGIRKSIKPHTLRHSFASHLLEGGADLRSVQIMLGHSDISTTQIYTHVTYRH----LKDA 290

Query: 314 YDQTHP 319
           +++ HP
Sbjct: 291 HEKFHP 296


>gi|50119715|ref|YP_048882.1| site-specific tyrosine recombinase XerD [Pectobacterium
           atrosepticum SCRI1043]
 gi|49610241|emb|CAG73684.1| integrase/recombinase [Pectobacterium atrosepticum SCRI1043]
          Length = 299

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 156/304 (51%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER L++ TL SY  D R    +LA +  + +  Q +      +++AF++ R
Sbjct: 10  EQFLDALWLERNLAENTLASYRLDLRSLAEWLAHHDNDLLHAQAL------DLQAFLADR 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++ F +YL + K  ++     + + K    LP+ L+E Q   L+
Sbjct: 64  IDGGYKATSSARLLSAMRRFFQYLYREKQRSDDPSAVLSSPKLPQRLPKDLSEAQVSALL 123

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D   +        ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K R
Sbjct: 124 DAPSIEQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVLGKGNKER 178

Query: 199 IVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL       I EYY     P+ LN      LF   R + +    F   I+       +
Sbjct: 179 LVPLGEEAVYWI-EYYLEHGRPWLLNGQTLDVLFPSNRARQMTRQTFWHRIKHYAVLASI 237

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
             +  + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 238 DSAKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQ 293

Query: 316 QTHP 319
           Q HP
Sbjct: 294 QHHP 297


>gi|154252172|ref|YP_001412996.1| tyrosine recombinase XerD [Parvibaculum lavamentivorans DS-1]
 gi|154156122|gb|ABS63339.1| tyrosine recombinase XerD [Parvibaculum lavamentivorans DS-1]
          Length = 319

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 157/319 (49%), Gaps = 21/319 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L  ERG ++ TL +YE D + F  FL     + +      Q S  +IR ++   
Sbjct: 13  EAFLEMLSAERGAARNTLDAYERDLKDFSGFLVSRGRDLV------QASANDIRQYLENL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q +   +  R LS I+ F  +L    + T+    ++   +++  LP+ L  ++   L+
Sbjct: 67  SDQGLSASTAARRLSAIRQFHGFLFAEGVRTDDPCGSIEGPRRARPLPKTLTVEEVDALL 126

Query: 139 DNVLLHTSHETK------WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
                     T+      +  AR   ++ +LY  GLR+SE + L    +   +  L + G
Sbjct: 127 SAAQRAEDGRTQEESVLAYKRARLVCLMEVLYATGLRVSELVGLPLSAVRGQERFLAVSG 186

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF--RGIRGKPLNPGVFQRYIRQL 250
           KG + R+VPL  + R AI  Y  L    L   +   LF  RG +G  L    F + ++ L
Sbjct: 187 KGGRERLVPLSETARAAIDAYLPLRSLRLGEQVSPWLFPSRGRQGH-LTRHRFAQLLKDL 245

Query: 251 RRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
               GL  S  + HTLRH+FA+HLL+NG DLR++Q +LGH  +STTQIYT+V      D 
Sbjct: 246 AVAAGLDASRVSPHTLRHAFASHLLANGADLRAVQQMLGHADISTTQIYTHVL-----DE 300

Query: 310 MMEIYDQTHPSITQKDKKN 328
            ++   QTH  + +K K +
Sbjct: 301 RLKELVQTHHPLAKKGKAS 319


>gi|325954400|ref|YP_004238060.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922]
 gi|323437018|gb|ADX67482.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922]
          Length = 294

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 159/299 (53%), Gaps = 28/299 (9%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E L E Q +L+   +E+ ++  T++SY  D ++   F     +E          +Y  + 
Sbjct: 5   ESLLEYQTYLK---LEKHMANNTIESYMRDIKKLQQFSPLLPQEH---------TYDSLV 52

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F+     ++   RS  R LSG+KS+  YL+  +I  ++    + + K    LP  L EK
Sbjct: 53  EFVHAM-AKEYSQRSQARILSGLKSYFNYLQYEEIRQDNPTELLESPKIGTKLPDVLTEK 111

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   LVD + L     +K    RN AI+ +LYGCGLR++E ++L   ++  ++  +R+ G
Sbjct: 112 EIDRLVDVIDL-----SKPEGERNRAIIEMLYGCGLRVTELVNLRISDLFFEEGYIRVLG 166

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP------LFRGIRGKPLNPGVFQRY 246
           KG+K R+VP+ P      ++Y DL   ++  +  +       LF   RG+ +   +    
Sbjct: 167 KGNKERLVPISPYT----IKYIDLYRNEIRKHQPIQPGYEDILFLNRRGRNITRVMIFTI 222

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           I++L    G+  + + HT RHSFATHLL NG DLR+IQ +LGH  + TT++YT+++ ++
Sbjct: 223 IKELSIIAGIQKNISPHTFRHSFATHLLKNGADLRAIQQMLGHENIVTTEVYTHIDQEH 281


>gi|296161400|ref|ZP_06844207.1| tyrosine recombinase XerC [Burkholderia sp. Ch1-1]
 gi|295888386|gb|EFG68197.1| tyrosine recombinase XerC [Burkholderia sp. Ch1-1]
          Length = 307

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 158/317 (49%), Gaps = 31/317 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L NLE ER LS  TL+ Y  +  +  +            + +  L+  +IR  +S+   
Sbjct: 10  YLSNLEHERRLSAHTLRGYTHELEELKLL--------AKGRPLESLTAVDIRGAVSRAHA 61

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS+   LS  ++F ++L  R     + +  +R  K++ +LP+AL+   A  L+++
Sbjct: 62  GGLTARSISHRLSAWRAFYRWLAGRVDLPANPVATVRAPKQAKTLPKALSVDDATRLMES 121

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD------------DQSTL 188
               +         R+ A+L L Y  GLR++E + L  +   D            D + +
Sbjct: 122 PPAASPEGL-----RDHAMLELFYSSGLRLAELVGLDAR-FADADGYRSAGWLKLDSAEV 175

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG++ R+VP+     +A+  +  +    +  +   PLF   RG  L+P V +  ++
Sbjct: 176 EVLGKGNRRRVVPVGSKALEALGAWLAVRDQMVKHDPH-PLFLSARGNRLSPNVVRERVK 234

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     G+P +   H LRHSFATH+L + GDLR++Q +LGH  ++ TQ+YT ++ ++   
Sbjct: 235 RAALVAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTALDFQH--- 291

Query: 309 WMMEIYDQTHPSITQKD 325
            +  +YDQ HP   ++D
Sbjct: 292 -LAHVYDQAHPRAKKRD 307


>gi|50085725|ref|YP_047235.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1]
 gi|49531701|emb|CAG69413.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1]
          Length = 305

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 164/306 (53%), Gaps = 24/306 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+   I+   S+ TL +Y+ D   F  F      EK  ++ + Q+  +++R +++ R  
Sbjct: 11  WLKERMIQNQ-SEHTLNAYQRDLTDFFDFC-----EKRKLELM-QVEASDLREYLAYRVE 63

Query: 81  QK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           Q  +   S++R LS I+ F+K+ ++ +    + + + +  +KS  LP  ++    +  V 
Sbjct: 64  QSNLSSSSIQRHLSSIRQFMKWAQQSQFLNMNPVEDFKLKRKSRPLPGMID----IETVH 119

Query: 140 NVLLHTSHETK-----WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
            +L  T+ E +     W+  R+ AIL LLY  GLR++E   L   ++  ++  LR+ GKG
Sbjct: 120 QILDQTAPEDELGTQLWL--RDKAILELLYSSGLRLAELQGLKLIDLDFNRQLLRVTGKG 177

Query: 195 DKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R++P     +++++++ ++   +      Q PLF    G  L P   +  ++     
Sbjct: 178 NKTRVIPFGKKAKQSLIDWLNVYRLWKGQFTQQDPLFVSQNGGALTPRQIENRVKHQALR 237

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+ +    H LRH FA+H+LS  GDLRS+Q +LGH  LSTTQIYT+++     D + ++
Sbjct: 238 AGVNVDLHPHLLRHCFASHMLSASGDLRSVQEMLGHSNLSTTQIYTHIDF----DHLAQV 293

Query: 314 YDQTHP 319
           YD+ HP
Sbjct: 294 YDRAHP 299


>gi|259507532|ref|ZP_05750432.1| tyrosine recombinase XerC [Corynebacterium efficiens YS-314]
 gi|259164917|gb|EEW49471.1| tyrosine recombinase XerC [Corynebacterium efficiens YS-314]
          Length = 296

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 153/307 (49%), Gaps = 21/307 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ++L+  +++   L +  G S  T++ Y  D R              TI  + + +   +R
Sbjct: 9   QMLEAIEDFCDYLILVVGRSDATVRGYRSDLRHM----------AATIPDLTEFTLPNLR 58

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           A++ +   +     +L R  + +KSF  +  K  + +      + + K + +LPR L E 
Sbjct: 59  AWLGRAVEEGKSRATLARRTASVKSFSTWAVKNGLISGDEAARLVSPKVTRNLPRVLGEV 118

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           QA   + +    T  E +    R+SAIL LLY  G+R+SE   L   ++   +  +R+ G
Sbjct: 119 QAGEFMGSAAADTEDEFR----RDSAILELLYATGMRVSELCGLDLGDVDHHRRMVRVLG 174

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KGDK R++P   +   A+ ++  L   D    ++  +F G+RG  ++    +R + +  +
Sbjct: 175 KGDKERMIPFGKAAADALEQW--LEARDRMAKVEDAMFVGVRGGRIDARQIRRIVDRTAQ 232

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G     + H+LRH+ ATHLL  G DLR +Q +LGH  L TTQIYT+V+S+     ++E
Sbjct: 233 VAGAD-HLSPHSLRHTAATHLLDGGADLRQVQEMLGHSSLQTTQIYTHVSSQR----LLE 287

Query: 313 IYDQTHP 319
            + Q HP
Sbjct: 288 AFRQAHP 294


>gi|330818646|ref|YP_004362351.1| Site-specific recombinase XerC [Burkholderia gladioli BSR3]
 gi|327371039|gb|AEA62395.1| Site-specific recombinase XerC [Burkholderia gladioli BSR3]
          Length = 306

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 156/324 (48%), Gaps = 45/324 (13%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L+  R LS+ TL+ Y  +    L             + +  L   ++R  +++   
Sbjct: 9   YLSYLQHVRQLSEHTLRGYAHELDALLAL--------ADGRPLASLGAADMRGAVARAHA 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS+   LS  ++F ++   R     + +  +R  K++ +LP+AL+   A TL+++
Sbjct: 61  GGLSARSIAHRLSAWRAFYRWYALRVEMPANPVATVRAPKRAKTLPKALSVDDANTLMES 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTLR 189
               T         R+ AIL L Y  GLR++E + L       D           Q+ + 
Sbjct: 121 PFPDTPEGL-----RDHAILELFYSSGLRLAELVGLDVHYTQADGYRSASWLDREQAEVS 175

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--------PLFRGIRGKPLNPG 241
           + GKG K R VP+    RKA      L   D  L ++         PLF  +RGK ++PG
Sbjct: 176 VLGKGGKERKVPV---GRKA------LEALDAWLAVRAGWVRTDPHPLFLSVRGKRMSPG 226

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           V +  +++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  +S TQ+YT++
Sbjct: 227 VVRERVKRAALVAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSL 286

Query: 302 NSKNGGDWMMEIYDQTHPSITQKD 325
           + ++    +  IYD  HP   ++D
Sbjct: 287 DFQH----LARIYDSAHPRAKKRD 306


>gi|330964079|gb|EGH64339.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 298

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 150/309 (48%), Gaps = 32/309 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKR 78
            +L  L +E+GLS  T  SY  D     +F  +  E  + + +  R++    I   ++ R
Sbjct: 11  QFLDTLWLEKGLSDNTRDSYRSD---LALFNGWLQERNVDLPSAGREV----ILDHLAWR 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  RS  R LSG + F +YL + K+      L +   +    LP++L+E       
Sbjct: 64  VDNAYKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADV---- 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL     ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K R
Sbjct: 120 -EALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKER 178

Query: 199 IVPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +VP+           +R A  E     P D+       LF   RG  +    F   I+  
Sbjct: 179 LVPMGEEAIVWVERYMRGARDELLGGKPSDV-------LFPSTRGDQMTRQTFWHRIKHQ 231

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+  S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        +
Sbjct: 232 ATVAGISKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----L 287

Query: 311 MEIYDQTHP 319
            E++ + HP
Sbjct: 288 QEMHAKHHP 296


>gi|290476402|ref|YP_003469307.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004]
 gi|289175740|emb|CBJ82543.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004]
          Length = 318

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 157/303 (51%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + +E+ L++ TL SY  D +    +L +   + +++++I      E++ F+++R
Sbjct: 29  EQFLDTIWLEKDLAENTLSSYRLDLQALNNWLVYSGHDLLSVESI------ELQLFLAER 82

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K+  +     +   K    LP+ L+EKQ     
Sbjct: 83  VDSGYKASSSARLLSAMRRLFQYLYREKMRLDDPTALLSAPKLPKRLPKDLSEKQV---- 138

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL+T    + I+ R+ A+L +LY CGLR+SE + LT  ++   Q  +R+ GKG+K R
Sbjct: 139 -GDLLNTPLTDQPIELRDKAMLEVLYACGLRVSELVGLTLSDMSLRQGVVRVVGKGNKER 197

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       + +Y +   P+ LN +     F   RG  +    F   I+      G+ 
Sbjct: 198 LVPLGEEALYWLEKYLEYGRPWLLNGSASDVFFPSKRGTQMTRQTFWHRIKHYAVLSGID 257

Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT V ++     +  ++ Q
Sbjct: 258 TERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTYVATER----LKMLHQQ 313

Query: 317 THP 319
            HP
Sbjct: 314 HHP 316


>gi|150026059|ref|YP_001296885.1| tyrosine recombinase XerD [Flavobacterium psychrophilum JIP02/86]
 gi|149772600|emb|CAL44083.1| Tyrosine recombinase XerD [Flavobacterium psychrophilum JIP02/86]
          Length = 299

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 106/303 (34%), Positives = 156/303 (51%), Gaps = 28/303 (9%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLA----FYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           L+IERGLSK ++ +Y  D  +   +L+      +   I  QTI+Q  Y      ISK   
Sbjct: 14  LKIERGLSKNSVANYVLDIEKLNHYLSDNNIHVSPVNINEQTIQQFIYE-----ISK--- 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS  R++SG+KSF  YL       ++ +  +   +    LP  LN +    L+  
Sbjct: 66  -SVNPRSQARTISGLKSFFSYLIFEDYRPDNPLALIETPRLGRKLPDTLNIEDIDKLIAA 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           + L T+        RN A+L  LY CGLR+SE +SL   ++   +  ++I GKG+K R V
Sbjct: 125 INLTTNE-----GERNRAMLETLYACGLRVSELVSLKISDLFFAEGFIKITGKGNKQRFV 179

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQL----PLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           P+    +K I E Y     +L L+IQ      LF   RG+ L   +    I+ L   +GL
Sbjct: 180 PISEYTQKYI-EIYKNTDRNL-LSIQKGHEDTLFLNRRGRQLTRAMIFTIIKNLAVEIGL 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HT RHSFATHLL NG DLRSIQ +LGH  ++TT+IY +V+ K+    + ++   
Sbjct: 238 NKVISPHTFRHSFATHLLENGADLRSIQLMLGHESITTTEIYMHVDRKH----LSQVMQT 293

Query: 317 THP 319
            HP
Sbjct: 294 FHP 296


>gi|15605600|ref|NP_220386.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           D/UW-3/CX]
 gi|255311708|ref|ZP_05354278.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           6276]
 gi|255318009|ref|ZP_05359255.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           6276s]
 gi|34222769|sp|O84872|XERD_CHLTR RecName: Full=Tyrosine recombinase xerD
 gi|3329338|gb|AAC68462.1| Integrase/recombinase [Chlamydia trachomatis D/UW-3/CX]
 gi|296436423|gb|ADH18597.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           G/9768]
 gi|296437354|gb|ADH19524.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           G/11222]
 gi|296438282|gb|ADH20443.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           G/11074]
 gi|297140783|gb|ADH97541.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           G/9301]
          Length = 300

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/299 (32%), Positives = 159/299 (53%), Gaps = 24/299 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L ++RG+S L++Q+Y  D   FL        ++ +I+   +++   +  F+ K    K  
Sbjct: 19  LSVDRGISPLSVQAYCQDVLLFL--------QRASIEATDRINQESVFLFVEKCHKAKES 70

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           + +L R L  +K F  +LK  K+  +   +    + K   LP  L+ ++  +L+D  L  
Sbjct: 71  ETTLARRLIALKVFFHFLKDAKMLDQQPFIEHPKIWKR--LPSILSTEEVNSLLDQPLNI 128

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            + +T  I +R++AILY  Y  G+R+SE   L   +I DD   +R+ GKG K R+VP+  
Sbjct: 129 PNLDTH-IASRDAAILYTFYATGIRVSELCDLCIGDISDD--FIRVTGKGRKTRLVPISI 185

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
             ++AI  Y  L  F   L  + P    +F  IRGK L+     + I    + +      
Sbjct: 186 KAKQAIDAY--LSSFRDELQKKNPSEEHVFLSIRGKKLDRSCVWKRITFYAKLVTTK-RI 242

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           + H+LRH+FATHLL+N  DLR IQ +LGH R+S+T+IYT+V S++    ++E +   HP
Sbjct: 243 SPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASES----LIEKFHTYHP 297


>gi|241764927|ref|ZP_04762927.1| integrase family protein [Acidovorax delafieldii 2AN]
 gi|241365489|gb|EER60254.1| integrase family protein [Acidovorax delafieldii 2AN]
          Length = 327

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 151/320 (47%), Gaps = 30/320 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRAFISKRR 79
           +L++  +E+ L+  TL  Y  D  +   F A        +Q  + QL    IR F+++  
Sbjct: 18  YLEHARVEKRLAARTLTLYALDLDKLARFAA-------AVQVPLLQLGSAHIRRFVAQMH 70

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           +     R +   LSG + F  +  ++ + + + + ++R  +    LP+AL    A+ L +
Sbjct: 71  SGGRSGRGIALILSGWRGFFAWAGRQGLISHNPVQDVRAPRAPKPLPKALGVDDAVRLAE 130

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR---------- 189
                 S    W++AR++A++ LLYGCGLR+ E + L      D +   R          
Sbjct: 131 ---YDHSGADPWLEARDAAMVELLYGCGLRVGELVGLDAAPHADSRRQGRGWVDLEAGEA 187

Query: 190 -IQGKGDKIRIVPL--LPSVRKAILEYYDLCPF--DLNLNIQLPLFRGIRGKPLNPGVFQ 244
            + GKG K R VP+                 PF  D +  +   LF G RG  L      
Sbjct: 188 HVFGKGSKRRSVPVGAAAMAALRAWLALRAAPFGGDASPRLDAALFVGRRGVRLTAQSIW 247

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +RQ  +  GL      H LRHSFA+HLL + GDLR++Q +LGH  ++TTQ+YT ++ +
Sbjct: 248 LRLRQRSQQAGLTTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTRLDFQ 307

Query: 305 NGGDWMMEIYDQTHPSITQK 324
           +    + ++YD  HP   +K
Sbjct: 308 H----LAKVYDAAHPRARRK 323


>gi|116494854|ref|YP_806588.1| integrase [Lactobacillus casei ATCC 334]
 gi|191638361|ref|YP_001987527.1| Tyrosine recombinase xerD [Lactobacillus casei BL23]
 gi|227535149|ref|ZP_03965198.1| site-specific DNA tyrosine recombinase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239631553|ref|ZP_04674584.1| tyrosine recombinase xerD [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301066416|ref|YP_003788439.1| integrase [Lactobacillus casei str. Zhang]
 gi|116105004|gb|ABJ70146.1| tyrosine recombinase XerD subunit [Lactobacillus casei ATCC 334]
 gi|190712663|emb|CAQ66669.1| Tyrosine recombinase xerD [Lactobacillus casei BL23]
 gi|227187194|gb|EEI67261.1| site-specific DNA tyrosine recombinase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239526018|gb|EEQ65019.1| tyrosine recombinase xerD [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300438823|gb|ADK18589.1| Integrase [Lactobacillus casei str. Zhang]
 gi|327382389|gb|AEA53865.1| hypothetical protein LC2W_1532 [Lactobacillus casei LC2W]
 gi|327385590|gb|AEA57064.1| hypothetical protein LCBD_1567 [Lactobacillus casei BD-II]
          Length = 293

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 154/306 (50%), Gaps = 27/306 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF-----YTEEKITIQTIRQLSYTEIRAF 74
           +++  L +ERGL+K T  SY+ D   F  +LA      + EE  TIQ+           F
Sbjct: 7   DFIHYLNVERGLAKATQTSYQQDLITFSAWLAARKRRTFPEEFGTIQS-----------F 55

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + ++   K    S+ R +S ++ F ++L +    +   +  +   K++  LP  L+ ++ 
Sbjct: 56  LKEQNATK-APASVSRMISALRKFYRFLLREGAISADPMTKIDTPKRAQHLPATLSSQEV 114

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
                + L+      K +  R+ AI  L+Y  GLR+SE + L    +    + L++ GKG
Sbjct: 115 -----DALMAKPDTDKPLGLRDRAIFELMYATGLRVSEVVDLRLDQLHLAMNLLQVTGKG 169

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRY 253
           DK R+VP+ P   + +  Y       L   +Q   +F    G P+      + ++     
Sbjct: 170 DKERLVPISPQATQWVDRYLQEARPKLLKRVQPKNVFVNFHGGPMTRQGIWKNLKAYIAS 229

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +G+    T HTLRHSFAT LL NG DLR +Q +LGH  +STTQIYT++++++    ++ +
Sbjct: 230 IGIEKDVTPHTLRHSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQH----LVAV 285

Query: 314 YDQTHP 319
           Y +THP
Sbjct: 286 YHKTHP 291


>gi|326693050|ref|ZP_08230055.1| tyrosine recombinase XerC [Leuconostoc argentinum KCTC 3773]
          Length = 302

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/294 (29%), Positives = 153/294 (52%), Gaps = 14/294 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           KE Q +   L+ ER  S LT+++Y  D   F  FLA    E     T R +   ++R ++
Sbjct: 4   KEAQLYQDYLQAERQYSDLTVKAYLTDIEAFTTFLA----ENGGFTTYRAVQTLDVRVYL 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++   +++   ++ R +S ++ F +++   +  +++   N+   K  + LP    E +  
Sbjct: 60  NELYERQLARTTIARKISSLRMFFQFMLANQFVSDNPFENVALRKHQSHLPEFFYESELT 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           TL +  + +   E  W   RN+A+L  LY  G R++E  +LT   +   Q  + I GKG+
Sbjct: 120 TLFE--VAYAEDEPLW--QRNAALLEFLYATGARVAEIANLTITQLDFAQRLVLIHGKGN 175

Query: 196 KIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLR 251
           K R VP      +A+ +Y ++L P    +  Q P   +F   RG+P+        + +L 
Sbjct: 176 KDRYVPFGHFAAQAMTQYLHELRP--QLVAKQAPHDRVFVNHRGEPITAAGITYILNELM 233

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +   L  +   H LRH+FATHLL++G D+R++Q +LGH  LSTTQ+YT+V  ++
Sbjct: 234 KKSALTGTIHPHMLRHTFATHLLNHGADMRTVQELLGHVNLSTTQMYTHVTRES 287


>gi|46143544|ref|ZP_00135036.2| COG4974: Site-specific recombinase XerD [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126209006|ref|YP_001054231.1| site-specific tyrosine recombinase XerD [Actinobacillus
           pleuropneumoniae L20]
 gi|303253035|ref|ZP_07339187.1| site-specific tyrosine recombinase XerD [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307246462|ref|ZP_07528535.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|307248587|ref|ZP_07530602.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|307255445|ref|ZP_07537252.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|307257614|ref|ZP_07539374.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|307259897|ref|ZP_07541611.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|307262027|ref|ZP_07543682.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|126097798|gb|ABN74626.1| tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
 gi|302648099|gb|EFL78303.1| site-specific tyrosine recombinase XerD [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306852666|gb|EFM84898.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|306854937|gb|EFM87125.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|306861629|gb|EFM93616.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|306863917|gb|EFM95840.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|306866067|gb|EFM97941.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|306868310|gb|EFN00132.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
          Length = 297

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 153/303 (50%), Gaps = 18/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L  E GLS+ T  +Y  D   F       +E   T +    L + +++AF+  R
Sbjct: 9   EQFLDTLWQEHGLSENTSAAYRLDLESF-------SEWLPTPKAFLTLDHFDLQAFLGGR 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++ F ++L       +   L + + +K   LP++L+E+Q + L+
Sbjct: 62  LELGYKATSSARMLSCLRKFFRFLYTENYRQDDPTLTLTSPRKPAHLPKSLSEEQVMDLL 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D     + +    I+ R+ A+L LLY  GLR+SE +SL+  N+   Q  +R+ GKGDK R
Sbjct: 122 D-----SPNTLDPIELRDKAMLELLYATGLRVSELVSLSIDNLSLRQGVVRVVGKGDKER 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+       I E++      L  N+Q  + F   RG+ +    F   I+      G+ 
Sbjct: 177 LVPIGEEAGYWIQEFFRYGRAILLNNLQSDVVFPSRRGQQMTRQTFWHRIKHYAVLAGID 236

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V        +  ++ Q
Sbjct: 237 SEKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR----LKSLHQQ 292

Query: 317 THP 319
            HP
Sbjct: 293 FHP 295


>gi|33151294|ref|NP_872647.1| site-specific tyrosine recombinase XerD [Haemophilus ducreyi
           35000HP]
 gi|71153413|sp|Q7VPN8|XERD_HAEDU RecName: Full=Tyrosine recombinase xerD
 gi|33147514|gb|AAP95036.1| integrase/recombinase XerD [Haemophilus ducreyi 35000HP]
          Length = 297

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/303 (32%), Positives = 156/303 (51%), Gaps = 18/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +E+ LS  TL SY  D     +F A+  E +  +     L++T+++ F+  R
Sbjct: 9   EQFLDTLWLEQSLSHNTLLSYRLDLE---LFSAWLVEPRAFLT----LTHTDLQLFLGDR 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S  R +S ++ F ++L   K   +     + + +K   LP++L+E+Q + L+
Sbjct: 62  LDKGYKSSSSARIISCLRKFFRFLCLEKYRLDDPTSMLISPRKRVQLPKSLSEEQVMDLL 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D       +    I+ R+ A+L LLY  GLR++E +SLT  N+   Q  +R+ GKGDK R
Sbjct: 122 D-----APNPLDPIELRDKAMLELLYATGLRVTELISLTIDNLNLRQGVVRVIGKGDKER 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+       I E++D     L  + Q   LF   R K +    F   I+      G+ 
Sbjct: 177 LVPIGEEASYWIQEFFDYGRMILLSDQQSDVLFPSRRAKQMTRQTFWHRIKYYAILAGID 236

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V        +  I+ Q
Sbjct: 237 AEKLSPHVLRHAFATHLINHGADLRVVQMLLGHSDLSTTQIYTHVAKTR----LKSIHKQ 292

Query: 317 THP 319
            HP
Sbjct: 293 FHP 295


>gi|189425748|ref|YP_001952925.1| tyrosine recombinase XerD [Geobacter lovleyi SZ]
 gi|189422007|gb|ACD96405.1| tyrosine recombinase XerD [Geobacter lovleyi SZ]
          Length = 295

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/303 (33%), Positives = 162/303 (53%), Gaps = 21/303 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +E+GLS  T  +Y  D  ++L +L     E++   T   +  ++I  F+ K R 
Sbjct: 8   FLAWLTVEKGLSANTRSAYAADLGRYLDYL-----ERLQRDTPDSIQPSDIAEFLGKERE 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYL--KKRKITTESNILNM-RNLKKSNSLPRALNEKQALTL 137
           + +  RS  R LS I+   ++L  ++  +T  S I+   R LKK   LP  L+  +    
Sbjct: 63  RGLAPRSRARLLSAIRMLHRFLLIERYAVTNPSAIIEAPRPLKK---LPTFLSMAE---- 115

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           VD  LL  +H ++  D R+ A+L LLY  GLR+SE ++L  + +  +   L   GKG+K 
Sbjct: 116 VDR-LLGATHGSRSEDIRDRAMLELLYATGLRVSELVNLKQREVNLEIGYLMTIGKGNKE 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R++P+  +    + +Y +      +   +Q  LF    G+ +    F   I++     G+
Sbjct: 175 RLIPIGAAACHRVADYLEQVRSKQDPEGLQPQLFLSRLGEAMTRQAFWNIIKKRALLAGV 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S + HTLRHSFATHLL+NG DLRS+Q +LGH  LSTTQIYT+V  +     + +++ +
Sbjct: 235 RTSISPHTLRHSFATHLLANGADLRSVQIMLGHADLSTTQIYTHVTRER----LKQLHRE 290

Query: 317 THP 319
            HP
Sbjct: 291 LHP 293


>gi|298505931|gb|ADI84654.1| integrase/recombinase XerD [Geobacter sulfurreducens KN400]
          Length = 295

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/303 (32%), Positives = 158/303 (52%), Gaps = 21/303 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +E+GL++ +++SY  D  ++L ++  +         IR L   +   F++  + 
Sbjct: 8   FLGYLVVEKGLARNSVESYARDLSRYLGYVEQHAGGDPA--AIRPLHVAD---FLAHLKE 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYL--KKRKITTESNILNM-RNLKKSNSLPRALNEKQALTL 137
             +G RS  R+LS ++ F ++L  +    T  ++I+   R L K   LP+ L  ++    
Sbjct: 63  SGLGARSRARALSAVRMFHRFLLVEGYAETNPTSIIEAPRVLAK---LPQVLTGREV--- 116

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
              +LL        I+ R+ A+L LLY  GLR+SE + L  +++      L   GKG+K 
Sbjct: 117 --EMLLAAPAGDAPIEVRDRAMLELLYATGLRVSELVGLRTRDVNTSAGYLMTVGKGEKE 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  S   A++ Y       L    + P LF    G+ +    F   I++  R  G+
Sbjct: 175 RLVPMGESACAAVVLYLSSARTQLGRGGESPFLFLSRLGERMTRQAFWNIIKKRSRQAGI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRHSFATHLL NG DLRS+Q++LGH  LSTTQIYT+V  +     +  +++Q
Sbjct: 235 LKGISPHTLRHSFATHLLENGADLRSVQAMLGHADLSTTQIYTHVTRER----LKRLHEQ 290

Query: 317 THP 319
            HP
Sbjct: 291 FHP 293


>gi|21232926|ref|NP_638843.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66767001|ref|YP_241763.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188990094|ref|YP_001902104.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv.
           campestris str. B100]
 gi|34222915|sp|Q8P550|XERC_XANCP RecName: Full=Tyrosine recombinase xerC
 gi|81307012|sp|Q4UYY0|XERC_XANC8 RecName: Full=Tyrosine recombinase xerC
 gi|254799362|sp|B0RNK3|XERC_XANCB RecName: Full=Tyrosine recombinase xerC
 gi|21114762|gb|AAM42767.1| site-specific recombinase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66572333|gb|AAY47743.1| site-specific recombinase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167731854|emb|CAP50038.1| site-specific tyrosine recombinase [Xanthomonas campestris pv.
           campestris]
          Length = 322

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 154/310 (49%), Gaps = 19/310 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L +L+IER +S  TL +Y  D    + + +    E +      QL   ++R F
Sbjct: 28  LSAVEPFLAHLQIERQVSAHTLDAYRRDLAALIGWASAQGSEDVA-----QLDSAQLRKF 82

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++    + +  +SL+R LS  +S+  +L K      S    +R  K    LP+ L+  +A
Sbjct: 83  VTAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIATSPAAALRAPKAPRKLPQVLDADEA 142

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           + LV+            +  R+ A+L L Y  GLR+SE  +L  +++  D   + + GKG
Sbjct: 143 VRLVEVP------TDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVTVLGKG 196

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K R+VP+      A+  +      D   + Q  +F G  G  ++    Q  I+QL    
Sbjct: 197 GKQRLVPVGSHAVAALRAWQR----DSGGSAQTHVFPGRAGGAISQRAVQIRIKQLAVRQ 252

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+      H LRHSFA+H+L + GDLR +Q +LGH  ++TTQIYT+++ ++    + ++Y
Sbjct: 253 GMFKHVHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQH----LAKVY 308

Query: 315 DQTHPSITQK 324
           D  HP   +K
Sbjct: 309 DAAHPRAKRK 318


>gi|320107747|ref|YP_004183337.1| integrase family protein [Terriglobus saanensis SP1PR4]
 gi|319926268|gb|ADV83343.1| integrase family protein [Terriglobus saanensis SP1PR4]
          Length = 311

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/281 (32%), Positives = 147/281 (52%), Gaps = 18/281 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRAFISKRRTQKI 83
           L +ERGL  LTL+SY+ D       L  ++E   ++ T + Q +   I +F++  R    
Sbjct: 20  LRVERGLRPLTLESYQGD-------LYAFSEHLDSLHTSLLQATQENIASFMAHLREHDQ 72

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD--NV 141
             RS+ R LS ++ F ++L   K       LN+ +      LP++L E +   ++D   V
Sbjct: 73  ESRSIARKLSCLRGFYRWLLLDKRIHHDPTLNIESPASWKVLPKSLAESEVREMLDRTGV 132

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
             H S +   +  R+ A++ LLY  GLR +E   L  +++  DQ   +++GKGDK RIVP
Sbjct: 133 AAH-SQQAGALSLRDHALMNLLYAGGLRAAEICDLRVEDLHLDQQRAQVRGKGDKERIVP 191

Query: 202 LLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           L  +  +A+  Y     P  +   +Q  LF  +RGKPL        ++   +        
Sbjct: 192 LADTAVQALEVYLQRGRPQLVAKGLQRALFLSVRGKPLTNQTVWSIVKSTNQL------A 245

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + H LRHS ATH++ +G DLRS+Q++LGH  + TTQ+YT++
Sbjct: 246 SPHKLRHSCATHMVEHGADLRSVQTLLGHADIVTTQVYTHL 286


>gi|255507490|ref|ZP_05383129.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           D(s)2923]
 gi|296439216|gb|ADH21369.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           E/11023]
          Length = 300

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/299 (32%), Positives = 158/299 (52%), Gaps = 24/299 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L ++RG+S L++Q+Y  D   FL        ++ +I+   +++   +  F+ K    K  
Sbjct: 19  LSVDRGISPLSVQAYCQDVLLFL--------QRASIEATDRINQESVFLFVEKCHKAKES 70

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           + +L R L  +K F  +LK  K+  +   +    + K   LP  L+ ++  +L+D  L  
Sbjct: 71  ETTLARRLIALKVFFHFLKDAKMLDQQPFIEHPKIWKR--LPSILSTEEVNSLLDQPLNI 128

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            + +T  I +R++AILY  Y  G+R+SE   L   +I DD   +R+ GKG K R+VP+  
Sbjct: 129 PNLDTH-IASRDAAILYTFYATGIRVSELCDLCIGDISDD--FIRVTGKGRKTRLVPISI 185

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
             ++AI  Y  L  F   L  + P    +F  IRGK L+     + I    + +      
Sbjct: 186 KAKQAIDAY--LSSFRDELQKKNPSEEHVFLSIRGKKLDRSCVWKRITFYAKLVTTK-RI 242

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           + H+LRH+FATHLL N  DLR IQ +LGH R+S+T+IYT+V S++    ++E +   HP
Sbjct: 243 SPHSLRHAFATHLLDNHADLRIIQEMLGHSRISSTEIYTHVASES----LIEKFHTYHP 297


>gi|187922354|ref|YP_001893996.1| site-specific tyrosine recombinase XerC [Burkholderia phytofirmans
           PsJN]
 gi|187713548|gb|ACD14772.1| tyrosine recombinase XerC [Burkholderia phytofirmans PsJN]
          Length = 307

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 159/323 (49%), Gaps = 43/323 (13%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L NLE ER LS  TL+ Y  +  +         ++    + +  L+  +IR  +S+   
Sbjct: 10  YLSNLEHERRLSAHTLRGYAHELEEL--------KQLAKGRPLESLTPVDIRGAVSRAHA 61

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS+   LS  ++F ++L  R     + +  +R  K++  LP+AL+   A  L+++
Sbjct: 62  GGLTARSISHRLSAWRAFYRWLAGRVDLAANPVATVRAPKQAKPLPKALSVDDATRLMES 121

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD------------DQSTL 188
               +         R+ A+L L Y  GLR++E + L  +   D            D + +
Sbjct: 122 PPAASPEGL-----RDHAMLELFYSSGLRLAELVGLDAR-FADADGYRSAGWLKLDSAEV 175

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL------PLFRGIRGKPLNPGV 242
            + GKG++ R+VP+     +A+  +       L +  Q+      PLF   RG  L+P V
Sbjct: 176 EVLGKGNRRRVVPVGSKALEALGAW-------LAVRDQMVKHDPHPLFLSARGNRLSPNV 228

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +  +++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  ++ TQ+YT ++
Sbjct: 229 VRERVKRAALVAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTALD 288

Query: 303 SKNGGDWMMEIYDQTHPSITQKD 325
            ++    +  +YDQ HP   ++D
Sbjct: 289 FQH----LAHVYDQAHPRAKKRD 307


>gi|289523043|ref|ZP_06439897.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503586|gb|EFD24750.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 299

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/300 (32%), Positives = 155/300 (51%), Gaps = 26/300 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +ERG S+ T+++Y  D  +++ F +    + I  +      +  +  F+    ++   
Sbjct: 19  LRLERGYSENTIEAYMTDIAKWIKFCSNQNLDPIPPR------HEYMSRFLKAMASEGKS 72

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL----KKSNSLPRALNEKQALTLVDN 140
             SL+R  + I+S+ +YL     T E  +   + L     K   LPR L+E +   L+  
Sbjct: 73  KASLQRYAAAIRSWNRYL-----TIEGWVDGEQWLPSLPSKEQKLPRILSEGEIERLIS- 126

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
               +  +   +  R+ A+  L YGCGLR SE  SL  ++I     TLR+ GKGDK R+V
Sbjct: 127 ----SCRDGSVLGGRDEALFELAYGCGLRASEVCSLALEDIDWRAGTLRVIGKGDKERVV 182

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LS 259
           PLL SV++ +  Y D     LN   +  LF    G+ L+     R IR+  +  G+P + 
Sbjct: 183 PLLGSVKEKLRHYVDAIRPLLNRREERWLFLTRTGRKLHREDLWRIIRRRGKAAGIPSVR 242

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRHS ATH+L  G DLR++Q +LGH  +STT+ YT+++ +     + +IYD+ HP
Sbjct: 243 LHPHVLRHSLATHMLRRGLDLRTLQELLGHASISTTERYTHLDLE-----LRDIYDKCHP 297


>gi|220929173|ref|YP_002506082.1| tyrosine recombinase XerD [Clostridium cellulolyticum H10]
 gi|219999501|gb|ACL76102.1| tyrosine recombinase XerD [Clostridium cellulolyticum H10]
          Length = 294

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 161/305 (52%), Gaps = 22/305 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + ++  LE ++ LS  TLQSY+ D  Q++ +L     ++I +  I   + T + A++   
Sbjct: 6   EKFINFLERDKRLSLNTLQSYKRDIEQYITYL-----KEINVTNIVNTNKTTVIAYLLHL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + +     ++ R+L+ I+SF ++L K K+        + + K    LP+ L+ ++   L+
Sbjct: 61  QKKGRATSTISRNLASIRSFYQFLYKDKVIDNDPTSELESPKVEKKLPQILSTQEVELLL 120

Query: 139 DNVLLHTSHETKWID---ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           D        + K +D    R+ A+L LLY  G+R+SE +SL   +I  D   ++   KG 
Sbjct: 121 D--------QPKCLDLKGIRDKAMLELLYATGIRVSELISLNLDDINFDLGLIKC-NKGT 171

Query: 196 KIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           + R +P+      A+ EY +    F +  + ++ LF  + GK L    F + I+  +   
Sbjct: 172 RERTIPIGSISTAAVHEYLEKSRNFLIQDSQEIALFVNVNGKRLTRQGFWKIIKHYKNQA 231

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            +    T HTLRHSFA HLL NG DLRSIQ +LGH  +S+TQIY  + +KN    + ++Y
Sbjct: 232 KINKDITPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQI-AKNK---IKDVY 287

Query: 315 DQTHP 319
            +THP
Sbjct: 288 KKTHP 292


>gi|297748991|gb|ADI51537.1| Integrase/recombinase (XerC/CodV family) [Chlamydia trachomatis
           D-EC]
 gi|297749871|gb|ADI52549.1| Integrase/recombinase (XerC/CodV family) [Chlamydia trachomatis
           D-LC]
          Length = 308

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/299 (32%), Positives = 159/299 (53%), Gaps = 24/299 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L ++RG+S L++Q+Y  D   FL        ++ +I+   +++   +  F+ K    K  
Sbjct: 27  LSVDRGISPLSVQAYCQDVLLFL--------QRASIEATDRINQESVFLFVEKCHKAKES 78

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           + +L R L  +K F  +LK  K+  +   +    + K   LP  L+ ++  +L+D  L  
Sbjct: 79  ETTLARRLIALKVFFHFLKDAKMLDQQPFIEHPKIWKR--LPSILSTEEVNSLLDQPLNI 136

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            + +T  I +R++AILY  Y  G+R+SE   L   +I DD   +R+ GKG K R+VP+  
Sbjct: 137 PNLDTH-IASRDAAILYTFYATGIRVSELCDLCIGDISDD--FIRVTGKGRKTRLVPISI 193

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
             ++AI  Y  L  F   L  + P    +F  IRGK L+     + I    + +      
Sbjct: 194 KAKQAIDAY--LSSFRDELQKKNPSEEHVFLSIRGKKLDRSCVWKRITFYAKLVTTK-RI 250

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           + H+LRH+FATHLL+N  DLR IQ +LGH R+S+T+IYT+V S++    ++E +   HP
Sbjct: 251 SPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASES----LIEKFHTYHP 305


>gi|262373155|ref|ZP_06066434.1| tyrosine recombinase XerC [Acinetobacter junii SH205]
 gi|262313180|gb|EEY94265.1| tyrosine recombinase XerC [Acinetobacter junii SH205]
          Length = 311

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/315 (31%), Positives = 165/315 (52%), Gaps = 31/315 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIF-----LAFYTEEKITIQTIRQLSYTEIRAFI 75
           WL+   I +  S+ T+++Y+ D   F  F     LA Y  E            +++R ++
Sbjct: 18  WLKE-RIIQNQSEHTIEAYQRDLTDFFNFCDSKSLALYDIEA-----------SDLREYL 65

Query: 76  SKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + R    ++   SL+R L+ I+ F+K+ ++ +   ++   + +  ++   LP  ++ +  
Sbjct: 66  ANRVEKDQLSSSSLQRHLTSIRQFMKWAEQGQYLQQNPSEDFKLKRQPRPLPGMVDIETV 125

Query: 135 LTLVDNVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
             ++D        E + W+  R+ AIL LLY  GLR++E   L  ++I  ++  LRI GK
Sbjct: 126 HQILDQAPPDKPIEQQLWL--RDKAILELLYSSGLRLAELQGLMIKDIDFNRQLLRITGK 183

Query: 194 GDKIRIVPLLPSVRKAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           G+K RIVP     + +++E+   Y +   + NL+    +F   RG  L P   +  ++  
Sbjct: 184 GNKTRIVPFGQKAKDSLIEWLKIYRIWQGEFNLDS--AVFISQRGNRLTPRQIENRVKLQ 241

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  G+ +    H LRH FA+H+LS  GDLRS+Q +LGH  LSTTQIYT+V+     D +
Sbjct: 242 AQRAGVNVDLHPHLLRHCFASHMLSASGDLRSVQEMLGHSNLSTTQIYTHVDF----DQL 297

Query: 311 MEIYDQTHPSITQKD 325
             +YDQTHP   QKD
Sbjct: 298 ARVYDQTHPR-AQKD 311


>gi|330985052|gb|EGH83155.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 298

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 151/308 (49%), Gaps = 32/308 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKRR 79
           +L  L +E+GLS  T  SY  D     +F  +  E  + + +  R++    I   ++ R 
Sbjct: 12  FLDALWLEKGLSDNTRDSYRSD---LALFNGWLQERNVDLPSAGREV----ILDHLAWRV 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                 RS  R LSG + F +YL + K+ +    L +   +    LP++L+E        
Sbjct: 65  ENAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADV----- 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL     ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K R+
Sbjct: 120 EALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179

Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           VP+           +R A  E     P D+       LF   RG  +    F   I+   
Sbjct: 180 VPMGEEAIVWVERYLRGARDELLGGKPSDV-------LFPSTRGDQMTRQTFWHRIKHQA 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+  S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + 
Sbjct: 233 TVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288

Query: 312 EIYDQTHP 319
           E++ + HP
Sbjct: 289 ELHAKHHP 296


>gi|330686041|gb|EGG97664.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU121]
          Length = 295

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 160/305 (52%), Gaps = 21/305 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE---IRAFI 75
           + +L+ ++IE+GLS  T+ +Y  D  ++        +E +T+Q I  + + +   I+  +
Sbjct: 6   EEYLKFIQIEKGLSVNTIGAYRRDLNKY--------KEYLTLQKISNIDFVDRQTIQECL 57

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                Q    +S+ R +S I+SF ++  + K   +   + +   K    LP  L   + +
Sbjct: 58  GYLIDQGQSSKSIARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEVDEVI 117

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L++   L+ ++       R+  +L LLY  G+R+SE + +  +++      +R+ GKGD
Sbjct: 118 ELLNAPDLNKNN-----GYRDRTMLELLYATGMRVSEVIQIEVEDVNLMMGFVRVFGKGD 172

Query: 196 KIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K RIVPL  +V   +  Y +   P  L   +   LF  + GKPL+     + I+Q     
Sbjct: 173 KERIVPLGDTVIDYLTTYIETVRPQLLKQTVTNVLFLNMHGKPLSRQGIWKMIKQNGLKA 232

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            +  + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y
Sbjct: 233 NINKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMY 288

Query: 315 DQTHP 319
           +Q HP
Sbjct: 289 NQYHP 293


>gi|295695953|ref|YP_003589191.1| tyrosine recombinase XerD [Bacillus tusciae DSM 2912]
 gi|295411555|gb|ADG06047.1| tyrosine recombinase XerD [Bacillus tusciae DSM 2912]
          Length = 295

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 155/304 (50%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +++ L IE+GL+  TL SY  D   F  FL     ++       +     I A+++  
Sbjct: 6   ERFIRYLAIEKGLAPSTLGSYRSDLEDFSDFL-----QRTGCGDWPETGRRHIVAYLA-- 58

Query: 79  RTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             QK+G    ++ R ++ ++SF ++L +  +        + + K    LPR LN ++   
Sbjct: 59  HLQKLGRAPATVSRHMASLRSFYQFLSREGLIEVDPTGQLDSPKADKRLPRVLNVEEV-- 116

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
                LL        +  R+ A+L +LY  G+R+SE +SL   ++  +   ++  GKG K
Sbjct: 117 ---ERLLAAPEGLTPMALRDRAMLEMLYATGVRVSELVSLNVTDVNLNMGYVKCYGKGSK 173

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            RIVPL  +  +A+  Y       L  N     LF   +GK L    F + +++  +  G
Sbjct: 174 ERIVPLGSAALEAVHAYLTRGRAGLLKNGDPGALFVNHQGKRLTRQGFWKILKKYAQTAG 233

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        + ++Y+
Sbjct: 234 IQKAITPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTQTR----LKDVYE 289

Query: 316 QTHP 319
           +THP
Sbjct: 290 RTHP 293


>gi|152976197|ref|YP_001375714.1| site-specific tyrosine recombinase XerC [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152024949|gb|ABS22719.1| tyrosine recombinase XerC [Bacillus cytotoxicus NVH 391-98]
          Length = 299

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/311 (29%), Positives = 159/311 (51%), Gaps = 31/311 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R +++  
Sbjct: 8   QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYVDVRLYLTTL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137
             +K+  +S+ R +S ++S  ++L  R+   E N   + +L KK  S+P+ L  ++    
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLM-REGYREDNPFALASLPKKEWSIPKFLYAEEL--- 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               L   S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG K 
Sbjct: 119 --EKLFEVSDTKTPLGQRNQALLELMYATGIRVSECVTLKLTDIDFSVGTILVMGKGKKQ 176

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248
           R +P     + A++ Y +      N   QL          +F   +G PL     +  + 
Sbjct: 177 RYIPFGSYAQDALITYIE------NGRKQLAKKTEEYSQMVFLNAKGVPLTDRGVRYILN 230

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L +   L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +    
Sbjct: 231 ELIKKTSLTMRISPHMLRHTFATHMLDEGSDLRAVQELLGHENLSTTQIYTHVSKER--- 287

Query: 309 WMMEIYDQTHP 319
            +  +Y + HP
Sbjct: 288 -LRSVYMKHHP 297


>gi|242373798|ref|ZP_04819372.1| tyrosine recombinase XerD [Staphylococcus epidermidis M23864:W1]
 gi|242348535|gb|EES40137.1| tyrosine recombinase XerD [Staphylococcus epidermidis M23864:W1]
          Length = 295

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/304 (33%), Positives = 160/304 (52%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTI-RQLSYTEIRAFIS 76
           + +L  ++IE+GLS  T+ +Y  D  ++  +L    E KIT I  + RQ+    +   I 
Sbjct: 6   EEYLNFIQIEKGLSSNTIGAYRRDLNKYKTYLE---ERKITHIDFVDRQVIQECLGHLID 62

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             ++ K    SL R +S I+SF ++  + K   +   + +   K    LP  L  ++ L 
Sbjct: 63  LGQSSK----SLARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEVQEVLD 118

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L     L T   TK    R+  +L LLY  G+R+SE + L  +++      +R+ GKG+K
Sbjct: 119 L-----LETPDLTKNNGYRDRTMLELLYATGMRVSEIIQLEVEDVNLMMGFVRVFGKGNK 173

Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            RIVPL  +V + +  Y +   P  L   +   LF  + GKPL+     + I+Q      
Sbjct: 174 ERIVPLGDAVIEYLTTYIETVRPQLLKQTVTHVLFLNMHGKPLSRQGIWKMIKQNGIKAN 233

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y+
Sbjct: 234 INKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYN 289

Query: 316 QTHP 319
           Q HP
Sbjct: 290 QFHP 293


>gi|183221728|ref|YP_001839724.1| tyrosine recombinase xerD [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189911803|ref|YP_001963358.1| site-specific recombinase XerD [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167776479|gb|ABZ94780.1| Site-specific recombinase XerD [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167780150|gb|ABZ98448.1| Tyrosine recombinase xerD [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 302

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 161/328 (49%), Gaps = 40/328 (12%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
           G+ LP +   +LL+  Q +L    +E+GLS  ++ SY  D  +F IFL     EK  I  
Sbjct: 2   GSKLP-VSQNQLLQTFQEYLS---VEKGLSDNSIYSYGYDLNKFAIFL-----EKEHINF 52

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           + ++   +I  F+ + R +KI  ++L R +  I+ F KYL+  K    +    +   + +
Sbjct: 53  L-EVKANDIMRFLEEERERKISAKTLAREVVAIRQFYKYLRDEKRLDSNPTEKIETPEVA 111

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            ++P  L + +   L  N+      E    + R+  I  LLY  GLRISEA +L   +I 
Sbjct: 112 RTIPDYLTQAEIEELFRNI-----KEDNLYELRDKCIFELLYSSGLRISEACNLKMTDID 166

Query: 183 DDQSTLRIQGKGDKIRIVPL-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            +  T+ ++GKG + R+VP            L   R  IL+    C F         +F 
Sbjct: 167 MENMTITVEGKGGRQRLVPFGEKSLEILKRYLVESRTEILKK-RTCDF---------VFV 216

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
             +G  +N     R +    +   +    T HTLRHSFATHLL N  DL+S+Q +LGH  
Sbjct: 217 SKKGSYINRKSVWRLLNHYIKRTKIKKKVTPHTLRHSFATHLLENHADLKSVQELLGHID 276

Query: 292 LSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           +STTQIYT++ +K     + E++ + HP
Sbjct: 277 ISTTQIYTHMANKT----LKEVHKKFHP 300


>gi|298571314|gb|ADI87658.1| tyrosine recombinase XerC [uncultured Nitrospirae bacterium MY2-1F]
 gi|298571415|gb|ADI87756.1| tyrosine recombinase XerC [uncultured Nitrospirae bacterium
           MY3-11A]
          Length = 288

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 154/303 (50%), Gaps = 27/303 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +E+E+  S  TL++Y+ D  +F    AF  ++  ++         +IR F++ +  Q + 
Sbjct: 1   MEVEKNASPHTLRAYKKDLEEFA---AFVKKDPASVDLY------DIRGFVAAQSKQGLA 51

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S+ R LS +K+F  YL      T +    + + K    LP  L++    T+++     
Sbjct: 52  KSSVMRRLSTVKAFFNYLASIGAVTANPTRLVPSPKVPKHLPNFLSKDDTFTMMEK---- 107

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            +    +  ARN AIL L Y  GLR+SE      ++I   Q+ ++++GKG K RIVP+  
Sbjct: 108 -AEGIGFTAARNKAILELFYSSGLRVSELAGADMESINLKQAMVKVRGKGKKERIVPI-G 165

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP--------LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           S     L+ Y +    +  +   P        LF    G+ L     +R + +  R  G+
Sbjct: 166 SYALGALKTYLVERLLIKEDTTRPRISTDPAALFINSSGERLTDRHIRRIVVKFARLTGV 225

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             +   HTLRH+FATHLL +G DLR IQ +LGH  LSTTQ YT+++ ++    +M++Y++
Sbjct: 226 EGAVGPHTLRHTFATHLLQSGADLRVIQELLGHASLSTTQKYTHLDIQH----LMDVYEK 281

Query: 317 THP 319
            HP
Sbjct: 282 CHP 284


>gi|322435169|ref|YP_004217381.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321162896|gb|ADW68601.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 310

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 158/317 (49%), Gaps = 22/317 (6%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           +E+L +   +L  L  ERG S+ T+++Y  + + F  +LA    E+     I  + +  I
Sbjct: 4   YEVLAD--GFLAMLRNERGASEHTVRAYTREVKDFAAYLAGEMGER----GIGAVEHLHI 57

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           R ++S    + +   S+ R+L+ ++S+ K+L K     ++  L +   K++  LPR  + 
Sbjct: 58  RGYLSVLYARGLEKSSMARALASVRSWFKWLAKEGKVEQNPALLVSTPKRAQHLPRVPSA 117

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           ++   ++D+  L ++    W + R+  I  LLYGCG+R SE   L   N+      + ++
Sbjct: 118 EEVNRVMDS--LESADGGTWPE-RDRVIFELLYGCGIRNSELCGLDMGNVQWANDAVLVR 174

Query: 192 GKGDKIRIVPLLPSVRKAILEYY--------DLCPFDLNLNIQLPLFRGIRGKP-LNPGV 242
           GKG K R+VPL      A+  Y               L  +  L +   +RG   L    
Sbjct: 175 GKGKKERLVPLGDEAAAAVRAYMPQRAERLAAAGKGGLIGDGALLMNARMRGTCRLTTRS 234

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             R ++ + +  GL      HTLRH+F TH+L +G DLR+IQ +LGH RLSTTQ YT + 
Sbjct: 235 VGRIVKAIAQSRGLAADVHPHTLRHAFGTHMLEDGADLRAIQEMLGHERLSTTQRYTQLT 294

Query: 303 SKNGGDWMMEIYDQTHP 319
                  +  +Y+++HP
Sbjct: 295 VGQ----VQRVYEESHP 307


>gi|289625892|ref|ZP_06458846.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646210|ref|ZP_06477553.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298488278|ref|ZP_07006311.1| Site-specific recombinase XerD [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157217|gb|EFH98304.1| Site-specific recombinase XerD [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330867528|gb|EGH02237.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 298

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 151/308 (49%), Gaps = 32/308 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKRR 79
           +L  L +E+GLS  T  SY  D     +F  +  E  + + +  R++    I   ++ R 
Sbjct: 12  FLDALWLEKGLSDNTRDSYRSD---LALFNGWLQERNVDLPSAGREV----ILDHLAWRV 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                 RS  R LSG + F +YL + K+ +    L +   +    LP++L+E        
Sbjct: 65  ENAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADV----- 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL     ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K R+
Sbjct: 120 EALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179

Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           VP+           +R A  E     P D+       LF   RG  +    F   I+   
Sbjct: 180 VPMGEEAIVWVERYLRGARDELLGGKPSDV-------LFPSTRGDQMTRQTFWHRIKHQA 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+  S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + 
Sbjct: 233 TVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288

Query: 312 EIYDQTHP 319
           E++ + HP
Sbjct: 289 EMHAKHHP 296


>gi|212715594|ref|ZP_03323722.1| hypothetical protein BIFCAT_00493 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660961|gb|EEB21536.1| hypothetical protein BIFCAT_00493 [Bifidobacterium catenulatum DSM
           16992]
          Length = 308

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 153/287 (53%), Gaps = 16/287 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L+  RGLS+ T ++Y  D  + L+ L     E++  + + +++  ++R ++++  ++K  
Sbjct: 14  LKANRGLSENTRKAYRGDVEECLLAL-----ERLGCRNLNEVTIEDLRMWMAES-SKKHA 67

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S+ R    ++ F  +  +  +TT      +   K  ++LP  L+E QA  L++ V   
Sbjct: 68  KSSMARKTVAVRGFFAWTHEHGVTTTDPACVLMTPKIPDTLPDVLSESQAEQLMERVDED 127

Query: 145 T--------SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           +        + + + I+ R++A+L LLY  G+R++E + L   +++    T+++ GKG+K
Sbjct: 128 SETSQPKERTMKQQAIELRDAAMLELLYATGMRVAELVGLDVPDVVFSNRTVKVTGKGNK 187

Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R++P     +KAI  + D   P  +       LF G +GK ++  + +R +    R  G
Sbjct: 188 QRVMPFGAPAQKAIRRWLDDGRPLLVGEQSAAALFLGRQGKRIDQRMVRRVVHACARDAG 247

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +P   + H LRHS ATH+L  G DLR +Q +LGH  L TTQ YT+V+
Sbjct: 248 VP-DISPHALRHSAATHMLDGGADLREVQELLGHSSLKTTQRYTHVS 293


>gi|330975463|gb|EGH75529.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 298

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 150/308 (48%), Gaps = 32/308 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKRR 79
           +L  L +E+GLS  T  SY  D     +F  +  E  +  I   R++    I   ++ R 
Sbjct: 12  FLDALWLEKGLSDNTRDSYRSD---LALFNGWLQERNVDLISAGREV----ILDHLAWRV 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                 RS  R LSG + F +YL + K+ +    L +   +    LP++L+E        
Sbjct: 65  ENAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADV----- 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL     ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K R+
Sbjct: 120 EALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179

Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           VP+           +R A  E     P D+       LF   RG  +    F   I+   
Sbjct: 180 VPMGEESIVWVERYLRGARDELLGGKPSDV-------LFPSTRGDQMTRQTFWHRIKHQA 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+  S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + 
Sbjct: 233 TVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288

Query: 312 EIYDQTHP 319
           E++ + HP
Sbjct: 289 ELHAKHHP 296


>gi|303232676|ref|ZP_07319361.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae
           PB189-T1-4]
 gi|302481162|gb|EFL44237.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae
           PB189-T1-4]
          Length = 346

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/343 (30%), Positives = 162/343 (47%), Gaps = 48/343 (13%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L+K +Q ++ +L   R LS  TL++Y  D   ++ ++     + ++I T RQL     R 
Sbjct: 21  LMKLKQEFMSHLSSTRNLSHNTLRAYSIDLDAYIAWVLARQYDALSI-THRQL-----RE 74

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++   ++    R++ R LS I+S+ K+   +  TT      + + K   +LPR LN   
Sbjct: 75  YLASLSSRGYATRTINRHLSAIRSWYKWFVWQGYTTSDAPAALASPKNPKTLPRVLNHHD 134

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
             TL  N    ++ E      R+   + +LY  G RISEA  LT  +I   ++ +R+ GK
Sbjct: 135 ITTLF-NAFDESTPE----GVRDRCFVEVLYATGCRISEAAQLTLGDIDMHEAQIRLFGK 189

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-------------NLNIQLP------------ 228
           G K+RIVP+       + EY       L               +  +P            
Sbjct: 190 GSKMRIVPVYKECLDELSEYITKARPRLLAARTATSRRRAAGKSAAVPTRGTAATGASNR 249

Query: 229 LFRGIRGKPLNPG----VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
           LF   RG P++      VF  YI +      LP + + H++RH+FAT LLS G DLRS+Q
Sbjct: 250 LFISTRGNPMSATALRYVFDSYIEK----ANLPATLSPHSMRHTFATDLLSGGADLRSVQ 305

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
            +LGH  LSTTQIYT+V+     D M     Q HP    + K+
Sbjct: 306 ELLGHSSLSTTQIYTHVSI----DAMKRAVKQAHPRAEAETKR 344


>gi|165976973|ref|YP_001652566.1| site-specific tyrosine recombinase XerD [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|303250986|ref|ZP_07337174.1| site-specific tyrosine recombinase XerD [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307253199|ref|ZP_07535075.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|165877074|gb|ABY70122.1| integrase/recombinase XerD [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|302650143|gb|EFL80311.1| site-specific tyrosine recombinase XerD [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306859343|gb|EFM91380.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
          Length = 297

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 154/303 (50%), Gaps = 18/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L  E GLS+ T  +Y  D   F       +E   T +    L + +++AF+ +R
Sbjct: 9   EQFLDTLWQEHGLSENTSVAYRLDLESF-------SEWLPTPKAFLTLDHFDLQAFLGER 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++ F ++L       +   L + + +K   LP++L+E+Q + L+
Sbjct: 62  LELGYKATSSARMLSCLRKFFRFLYTENYRQDDPTLTLTSPRKPAHLPKSLSEEQVMDLL 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D     + +    ++ R+ A+L LLY  GLR+SE +SL+  N+   Q  +R+ GKGDK R
Sbjct: 122 D-----SPNTLDPVELRDKAMLELLYATGLRVSELVSLSIDNLSLRQGVVRVVGKGDKER 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+       I E++      L  N+Q  + F   RG+ +    F   I+      G+ 
Sbjct: 177 LVPIGEEAGYWIQEFFRYGRAILLNNLQSDVVFPSRRGQQMTRQTFWHRIKHYAVLAGID 236

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V        +  ++ Q
Sbjct: 237 SEKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR----LKSLHQQ 292

Query: 317 THP 319
            HP
Sbjct: 293 FHP 295


>gi|294340803|emb|CAZ89198.1| putative XerD or XerC integrase [Thiomonas sp. 3As]
          Length = 340

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 159/328 (48%), Gaps = 35/328 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L + + ER L++ TL +Y  D    L        E +    I  L    IR + ++  
Sbjct: 24  DYLAHAQTERRLAEGTLVNYRRDLDDLL-----QRAEALGAAPIESL---HIRRWAAQLH 75

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV- 138
              +  R++   LS  +SF +++ +      + + ++R  K +  LP+AL+  QA+ L  
Sbjct: 76  AGGMSPRAIAARLSAWRSFFRWMGRLGFVAANPVQDVRAPKAAKPLPKALSVDQAVALAA 135

Query: 139 -----------DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL------TPQNI 181
                       +   H +       AR  AI  LLY CGLR+SE   L      T +  
Sbjct: 136 YTPQESTPASHPHRRPHQAEPFATRGARVHAIAELLYSCGLRVSELTGLDVRASKTARGW 195

Query: 182 MD-DQSTLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
           +D D +   + GKG+K R VP+    L ++R+ + +   L   D + + Q+ LF G RG 
Sbjct: 196 IDWDAAEATVTGKGNKRRSVPIGRPALLALRQWLEQRPALLRCDADADAQVALFLGARGA 255

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L P      +R+  R  GL      H LRHSFA+H+L + GDLR++Q +LGH  ++TTQ
Sbjct: 256 RLTPQRVWLELREHARAAGLDARVHPHMLRHSFASHVLQSSGDLRAVQELLGHSSIATTQ 315

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           +YT ++ ++    + ++YD  HP   +K
Sbjct: 316 VYTRLDFQH----LAKVYDAAHPRARKK 339


>gi|118594353|ref|ZP_01551700.1| Tyrosine recombinase XerD [Methylophilales bacterium HTCC2181]
 gi|118440131|gb|EAV46758.1| Tyrosine recombinase XerD [Methylophilales bacterium HTCC2181]
          Length = 295

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 159/305 (52%), Gaps = 24/305 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK-ITIQTIRQLSYTEIRAFISKR 78
           +++ +L +E GLSK TL SY  D    +IF ++  E+K I +  + +L   E  AF    
Sbjct: 8   DFIDHLWLEDGLSKNTLNSYRFD---LIIFDSWLGEQKKIAMMDVSELEIQEFLAF---- 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +      RS+ R L+ ++ F +Y  + K   +   L ++  K   SLP++L+E++  +L+
Sbjct: 61  KFPSSKSRSISRLLATLRRFFRYQLREKKIQKDPTLKIQTPKIPKSLPKSLSEEEVESLL 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D   L +S        R+ ++L LLY CGLR++E + +    ++     +R+ GKG K R
Sbjct: 121 DAPNLDSSS-----GLRDRSMLELLYACGLRVTELVDIQLTEVILSDGVIRVTGKGSKTR 175

Query: 199 IVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +VP+    +  ++K I E  D     L       LF   RG  +    F   I++     
Sbjct: 176 LVPMGEEAVDWIKKYIAEARDDI---LRKKTSKFLFVTNRGGAMTRQAFWYVIKKYAVIA 232

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            +    + H LRH+FATHL+++G DLR +Q +LGH  +STTQIYT+V  +     + +I+
Sbjct: 233 NINKPMSPHILRHAFATHLINHGADLRVVQMLLGHTDISTTQIYTHVARER----LKKIH 288

Query: 315 DQTHP 319
            + HP
Sbjct: 289 QEHHP 293


>gi|166154210|ref|YP_001654328.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           434/Bu]
 gi|166155085|ref|YP_001653340.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335456|ref|ZP_07223700.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           L2tet1]
 gi|165930198|emb|CAP03683.1| integrase/recombinase [Chlamydia trachomatis 434/Bu]
 gi|165931073|emb|CAP06637.1| integrase/recombinase [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 300

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/299 (32%), Positives = 159/299 (53%), Gaps = 24/299 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L ++RG+S L++Q+Y  D   FL        ++ +I+   +++   +  F+ K    K  
Sbjct: 19  LSVDRGISPLSVQAYCQDVLLFL--------QRASIEATDRINQESVFLFVEKCHKAKES 70

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           + +L R L  +K F  +LK  K+  +   +    + K   LP  L+ ++  +L+D  L  
Sbjct: 71  ETTLARRLIALKVFFHFLKDVKMLDQQPFIEHPKIWKR--LPSILSTEEVNSLLDQPLNI 128

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            + +T  I +R++AILY  Y  G+R+SE   L   +I DD   +R+ GKG K R+VP+  
Sbjct: 129 PNLDTH-IASRDAAILYTFYATGIRVSELCDLCIGDISDD--FIRVTGKGRKTRLVPISI 185

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
             ++AI  Y  L  F   L  + P    +F  IRGK L+     + I    + +      
Sbjct: 186 KAKQAIDAY--LSSFRDELQKKNPSEEHVFLSIRGKKLDRSCVWKRITFYAKLVTTK-RI 242

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           + H+LRH+FATHLL+N  DLR IQ +LGH R+S+T+IYT+V S++    ++E +   HP
Sbjct: 243 SPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASES----LIEKFHTYHP 297


>gi|326803729|ref|YP_004321547.1| tyrosine recombinase XerD [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651687|gb|AEA01870.1| tyrosine recombinase XerD [Aerococcus urinae ACS-120-V-Col10a]
          Length = 299

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/305 (32%), Positives = 163/305 (53%), Gaps = 19/305 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  L +E+GLS+ T+++Y     QF + L+     +  I+ I+ +   +I   +   
Sbjct: 8   EDFLIALRVEQGLSENTIKTYHNVLNQFQMILS-----EAGIEDIQAVKRQDIIQQLENL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     ++ + LS ++ F KYL    +  E+ + N+   KK   LP+ L+ ++    V
Sbjct: 63  NQKGRAVSTMSQYLSTLRHFFKYLILDSVIEENPVENISLPKKKQQLPQVLSVEE----V 118

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D  LL        +  R+ ++L LLY  GLR+SE + L   +  +D   L+  GKG+K R
Sbjct: 119 DR-LLEMPDVNSTLGLRDRSLLELLYASGLRVSELVHLKISDFHEDLGFLQTIGKGNKER 177

Query: 199 IVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYL 254
           I+PL    +  +  Y       L   N   Q  ++    G+PL+  GV+++ ++Q  +  
Sbjct: 178 IIPLGEVAKDWLQTYLKESRLKLLGENDQSQGMIYLNHHGRPLSRQGVWKK-LKQYIQAA 236

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+    + HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT+++S++    M EIY
Sbjct: 237 GITKEVSPHTLRHSFATHLLENGADLRVVQELLGHADISTTQIYTHIHSQH----MREIY 292

Query: 315 DQTHP 319
            +T P
Sbjct: 293 KKTFP 297


>gi|330894535|gb|EGH27196.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 298

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 151/308 (49%), Gaps = 32/308 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKRR 79
           +L  L +E+GLS  T +SY  D     +F  +  E  + + +  R++    I   ++ R 
Sbjct: 12  FLDALWLEKGLSDNTRESYRSD---LALFNGWLQERNVDLPSAGREV----ILDHLAWRV 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                 RS  R LSG + F +YL + K+ T    L +   +    LP++L+E        
Sbjct: 65  ENAYKPRSTARFLSGARGFYRYLLREKLITLDPTLQIDMPQLGKPLPKSLSEADV----- 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL     ++    R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K R+
Sbjct: 120 EALLAAPDLSEPTGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179

Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           VP+           +R A  E     P D+       LF   RG  +    F   I+   
Sbjct: 180 VPMGEEAIVWVERYLRGARDELLGGKPSDV-------LFPSTRGDQMTRQTFWHRIKHQA 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+  S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + 
Sbjct: 233 TVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288

Query: 312 EIYDQTHP 319
           E++ + HP
Sbjct: 289 EMHAKHHP 296


>gi|21673437|ref|NP_661502.1| integrase/recombinase XerD [Chlorobium tepidum TLS]
 gi|34222899|sp|Q8KET0|XERD_CHLTE RecName: Full=Tyrosine recombinase xerD
 gi|21646539|gb|AAM71844.1| integrase/recombinase XerD [Chlorobium tepidum TLS]
          Length = 304

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 152/305 (49%), Gaps = 13/305 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  + +L  L +ER  S  T  SY  D  ++L +L      +  ++   + +  +IR FI
Sbjct: 10  KTLETFLNYLTLERNFSGNTRASYLNDLGRYLAWL-----HECGVKP-EEAAPGDIRKFI 63

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            +     +   S+ R++S I+SF K+L   ++ T +   N+   K +  LP  L  ++  
Sbjct: 64  QELHEIGLEASSIARNISAIRSFHKFLLTERLATMNPAENIHQPKLARYLPSVLTIEEMA 123

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           TL+D  L    H T     R+ A+L  LY  G+R+SE L L+  N+  D   +R+ GKG 
Sbjct: 124 TLLDAPL--KRHPTSTFMLRDKAMLEFLYATGVRVSELLGLSRLNLHMDDGFVRVFGKGS 181

Query: 196 KIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K R+VP+  +    +  Y D L P  ++      +F   RG PL+       +R+     
Sbjct: 182 KERLVPVGQTAISWMKRYLDELRPGMMSATSHDTIFLNSRGGPLSRMAAWNIVREHAVIA 241

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+    + HT RHSFATHLL  G DLR +Q +LGH  +  TQIYT+++      ++ E++
Sbjct: 242 GIEKPISPHTFRHSFATHLLEGGADLRVVQEMLGHSSIIATQIYTHIDR----SFIKEVH 297

Query: 315 DQTHP 319
              HP
Sbjct: 298 KTFHP 302


>gi|209694155|ref|YP_002262083.1| site-specific tyrosine recombinase XerD [Aliivibrio salmonicida
           LFI1238]
 gi|208008106|emb|CAQ78247.1| tyrosine recombinase XerD [Aliivibrio salmonicida LFI1238]
          Length = 300

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/303 (32%), Positives = 156/303 (51%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + +ERGLS+ TL SY  D  + L +L    E      +I  +   E +A++  +
Sbjct: 11  ERFLDTMWMERGLSENTLSSYRNDLMKLLNWL---DENHYKCASISAMGLNEYQAYLVDK 67

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + ++    S  R LS ++ F +YL + KI  +     + + K    LP+ L+E+Q     
Sbjct: 68  QYKQT---SRARMLSALRRFFQYLHREKIRGDDPTALLMSPKLPQRLPKDLSEEQV---- 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            N LL   +    ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKGDK R
Sbjct: 121 -NDLLEAPNVDDPLELRDRAMLELLYATGLRVTELVSLTMENLSLRQGVVRVTGKGDKER 179

Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+  +    I  + D     L        +F   R + +    F   I+      G+ 
Sbjct: 180 LVPMGENAVYWIQTFLDQGRSTLLGEKSSDVVFPSRRARQMTRQTFWHRIKHYAVIAGID 239

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +I+ +
Sbjct: 240 TDKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIHQE 295

Query: 317 THP 319
            HP
Sbjct: 296 HHP 298


>gi|327402648|ref|YP_004343486.1| tyrosine recombinase XerD subunit [Fluviicola taffensis DSM 16823]
 gi|327318156|gb|AEA42648.1| tyrosine recombinase XerD subunit [Fluviicola taffensis DSM 16823]
          Length = 301

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/288 (31%), Positives = 154/288 (53%), Gaps = 13/288 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + ++  L+IER L++ ++ +Y+ D  +   F   YT     IQT        ++ F+++ 
Sbjct: 9   KQFVHYLKIERSLAENSIFAYQQDIAKLRDFCESYTLSPEHIQT------GHLKQFVAEL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +  RS  R +SG K F  +L   +I  +     +   K    LP  L  ++   L+
Sbjct: 63  YDMGLSARSQARIISGWKQFFDFLVLEEIRKDDPSEALELPKIGRKLPEVLTIEEIDALI 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D + L +S+E +    RN AIL  LY CG+R+SE +SL  ++   ++  +R+ GKG+K R
Sbjct: 123 DAIDL-SSNEGQ----RNKAILETLYSCGIRVSELVSLRFEDCFFEEGFIRVIGKGNKER 177

Query: 199 IVPLLPSVRKAILEY--YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VP+ PSV + + EY  +D     +    +  +F   RG  L   +    I++L    G+
Sbjct: 178 LVPVSPSVIEEVGEYVEHDRSNLLIKKGHEQFVFLNRRGAQLTRVMIFTIIKRLADLAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             + + HT RHSFATHL+  G +LR+IQ +LGH  ++TT+IYT+++ +
Sbjct: 238 KKNISPHTFRHSFATHLIEGGANLRAIQDMLGHESITTTEIYTHLDQR 285


>gi|33594905|ref|NP_882548.1| site-specific tyrosine recombinase XerC [Bordetella parapertussis
           12822]
 gi|33564981|emb|CAE39928.1| putative integrase/recombinase [Bordetella parapertussis]
          Length = 326

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 155/323 (47%), Gaps = 27/323 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +WL++L+  R  S  TL  Y  D RQ                 + +++   IR F+++  
Sbjct: 16  DWLRHLQAHRRYSAHTLDGYTRDLRQLA------QLAAAAGLPLERVANGHIRHFVARLH 69

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q +G RSL R+L+  + F ++         +    +R  K    LP+AL+ +Q   L+D
Sbjct: 70  AQGLGPRSLARALAAWRGFYQWWAPAAGLPGNPATGVRAPKAPRGLPKALSVEQTQVLLD 129

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL------TPQN-----IMDDQSTL 188
           +     + E   +  R+ A+  LLY  GLR++E +SL      TP+      +  D + +
Sbjct: 130 HAPARLATEPAAL--RDHAMFELLYSSGLRLAELVSLDLRYERTPEYESRSWLNRDDAEV 187

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL----FRGIRGKPLNPGVFQ 244
            + GKG K R VP+  S   A+ ++    P               F G RG+ + P V Q
Sbjct: 188 IVVGKGGKRRSVPVGQSALAALDKWLQARPQLAAAGAGAQDAAALFVGTRGRRIAPRVVQ 247

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             + +L +  GLP     H LRH+FA+H+L +  DLR++Q +LGH  +STTQ+YT ++ +
Sbjct: 248 LQLARLAQAAGLPAHVHPHVLRHNFASHVLQSAQDLRAVQEMLGHANISTTQVYTRLDFQ 307

Query: 305 NGGDWMMEIYDQTHPSITQKDKK 327
           +    +   YDQ HP   +K  +
Sbjct: 308 H----LARAYDQAHPRADRKTSR 326


>gi|304311873|ref|YP_003811471.1| Phage integrase/ Tyrosine recombinase XerD [gamma proteobacterium
           HdN1]
 gi|301797606|emb|CBL45827.1| Phage integrase/ Tyrosine recombinase XerD [gamma proteobacterium
           HdN1]
          Length = 316

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 152/303 (50%), Gaps = 22/303 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL  + +E+GLS  TL++Y  D  Q+  +    +E+ + ++   Q+    ++ ++  R  
Sbjct: 30  WLDAVWLEKGLSSRTLEAYRQDLEQWCRWC---SEQAVLLE---QVDADTVQRYLQARAQ 83

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                RSL R LS ++ F  Y  +    T+     +   K    LPR+++E        +
Sbjct: 84  HGTHSRSLARMLSCLRGFFAYQVRAGALTQDPTALVEAPKSGRPLPRSISEADV-----S 138

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL   +    ++ R+ A+L +LY  GLR+SE + L    I   Q  +R+ GKG K R+V
Sbjct: 139 ALLAAPNLEDPLELRDRAMLEVLYATGLRVSELIGLRLAQINRRQGVVRVMGKGSKERLV 198

Query: 201 PL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           PL    L  + +  L+   L     + +I  P   G RG  +    F   I+   +  GL
Sbjct: 199 PLGEEALFWLERYFLQARALLLSSSDDDIVFP---GRRGTEMTRQAFWYRIKYHAQQAGL 255

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            +  + HTLRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V        + +++ Q
Sbjct: 256 RVHLSPHTLRHAFATHLINHGADLRVVQMLLGHSDLSTTQIYTHVARLR----LKQLHAQ 311

Query: 317 THP 319
            HP
Sbjct: 312 HHP 314


>gi|294669162|ref|ZP_06734243.1| tyrosine recombinase XerC [Neisseria elongata subsp. glycolytica
           ATCC 29315]
 gi|291308906|gb|EFE50149.1| tyrosine recombinase XerC [Neisseria elongata subsp. glycolytica
           ATCC 29315]
          Length = 303

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/300 (31%), Positives = 148/300 (49%), Gaps = 22/300 (7%)

Query: 26  EIER-GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           E++R G S+ TL +Y  D  Q    L  + +          +   +  A + K   Q   
Sbjct: 21  ELQRQGKSEHTLTAYRRDLTQLFNLLPAHGQS---------VGRNDFVAVLKKLSQQNQS 71

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           +RSL R LS  + +  +L ++K+      + ++  K    LP+A++ +    L+D    H
Sbjct: 72  ERSLARKLSAWRQYCAFLMRQKLLDADPTVRLKAPKAPERLPKAVDAEPLNRLLD----H 127

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
              E   +D R+ AI  LLYG GLR++E   L   +I+ D+  + ++GKG K R VPL  
Sbjct: 128 APAENG-LDVRDLAIFELLYGSGLRVAEVHGLNTDDILLDEGWVEVRGKGGKHRQVPLGS 186

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
               A+  Y    P  +  + +  LF G  GK L     Q  +R      G P   + H 
Sbjct: 187 RSVSALRAY---LPQRIAQSGETALFTGHTGKRLGIRQIQNRLRDWAVKNGSPQHLSPHM 243

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           +RHS+A+HLL + GD+R+IQ +LGH  LS TQIYT ++     D + ++YD+ HP   +K
Sbjct: 244 MRHSYASHLLQSSGDIRAIQELLGHSNLSATQIYTKLDF----DRLAQVYDRAHPRAKRK 299


>gi|289675164|ref|ZP_06496054.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           syringae FF5]
          Length = 298

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 150/308 (48%), Gaps = 32/308 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKRR 79
           +L  L +E+GLS  T  SY  D     +F  +  E  +  I   R++    I   ++ R 
Sbjct: 12  FLDALWLEKGLSDNTRDSYRSD---LALFNGWLQERNVDLISAGREV----ILDHLAWRV 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                 RS  R LSG + F +YL + K+ +    L +   +    LP++L+E        
Sbjct: 65  ENAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADV----- 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL     ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K R+
Sbjct: 120 EALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179

Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           VP+           +R A  E     P D+       LF   RG  +    F   I+   
Sbjct: 180 VPMGEESIVWVERYLRGARDELLGGKPSDV-------LFPSTRGDQMTRQTFWHRIKHQA 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+  S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + 
Sbjct: 233 TVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288

Query: 312 EIYDQTHP 319
           E++ + HP
Sbjct: 289 ELHARHHP 296


>gi|330872807|gb|EGH06956.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 298

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 150/308 (48%), Gaps = 32/308 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKRR 79
           +L  L +E+GLS  T  SY  D     +F  +  E  + + +  R++    I   ++ R 
Sbjct: 12  FLDALWLEKGLSDNTRDSYRSD---LALFNGWLQERNVDLPSAGREV----ILDHLAWRV 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                 RS  R LSG + F +YL + K+      L +   +    LP++L+E        
Sbjct: 65  DNAYKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADV----- 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL     ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K R+
Sbjct: 120 EALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179

Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           VP+           +R A  E     P D+       LF   RG  +    F   I+   
Sbjct: 180 VPMGEEAIVWVERYMRGARDELLGGKPSDV-------LFPSTRGDQMTRQTFWHRIKHQA 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+  S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + 
Sbjct: 233 TVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288

Query: 312 EIYDQTHP 319
           E++ + HP
Sbjct: 289 EMHAKHHP 296


>gi|78189718|ref|YP_380056.1| phage/XerD family site-specific recombinase [Chlorobium
           chlorochromatii CaD3]
 gi|78171917|gb|ABB29013.1| site-specific recombinase, phage/XerD family [Chlorobium
           chlorochromatii CaD3]
          Length = 338

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/322 (30%), Positives = 167/322 (51%), Gaps = 28/322 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT--EIRAFIS 76
           Q +L+++   RGLS  T+ +Y  D  QF  FLA + E  + ++  +  S T  ++R F+ 
Sbjct: 24  QAFLEHVAQRRGLSPNTVVAYRGDLIQFFTFLAQHLE-LLDLRAFQPESVTPMDVRLFMG 82

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA-- 134
               Q +  RS+ R L  +K F +YL++  I T     ++ + K    +P  L E+Q   
Sbjct: 83  FLLEQGVKQRSIARKLVAVKVFYRYLQEHGIITTCLFSSLGSPKFPQRVPNFLTEEQTSK 142

Query: 135 ----LTLVDNVLLHTSHET-----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
               L  V N  +  S         +  AR+ +IL LLY  GLR+SE ++L    +  ++
Sbjct: 143 LFELLETVPNGAVSDSQPANSALHAFTAARDCSILELLYSSGLRVSELVNLRMDELDVER 202

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI----RGKPLNPG 241
             +++ GKG++ RIVP+  +  +A+ +Y+++      +N ++  F  +    +G  + P 
Sbjct: 203 GYVKVHGKGNRERIVPVGAAAIEALKKYFEVRRNFFRMNKEVEPFTSVFVTQKGAKIYPM 262

Query: 242 VFQRYIRQLRRYLGLPLS---TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           + QR      R+L L         H LRH+FATHLL++G DL S+  +LGH  L+TT++Y
Sbjct: 263 LVQRVTA---RHLSLVTEQKKKNPHLLRHTFATHLLNSGADLESVSEMLGHSNLATTELY 319

Query: 299 TNVNSKNGGDWMMEIYDQTHPS 320
           T+V      + + E+Y + HP+
Sbjct: 320 THVTF----ERLKEVYRKAHPN 337


>gi|300692939|ref|YP_003753934.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07]
 gi|299079999|emb|CBJ52674.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07]
          Length = 329

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/325 (30%), Positives = 162/325 (49%), Gaps = 39/325 (12%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L+ ER LS+ TL SY    R+  +      +    I  + QL    IR  +++   
Sbjct: 23  YLDTLKFERQLSQHTLASY---ARELAVLQQLGAQFAAGIDLM-QLQPHHIRRMMAQLHG 78

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVD 139
             +  RS+ R+LS  + + ++L  R     +N ++ +R  K    LP+AL+ +QA+ L++
Sbjct: 79  GGLSGRSIARALSAWRGWYRWLALRDAAVTANPVDGVRAPKSPKKLPKALSVEQAVALME 138

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----------MD-DQSTL 188
             L     ET     R+ A+  L Y CGLR+SE + L  +++          +D D   +
Sbjct: 139 Q-LPGDDPET----VRDRAVNELFYSCGLRLSELVGLDLRHVRAGDYESASWLDLDTREV 193

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYY---------DLCPFDLNLNIQLPLFRGIRGKPLN 239
            + GKG K R VP+     +A++ +          D  P D +      LF   RGK L 
Sbjct: 194 MVLGKGSKRRTVPVGRKAAEALVAWLAARPQLARPDAAPEDAHA-----LFLSARGKRLA 248

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               Q  +++     G+P     H LRHSFATH+L + GDLR++Q +LGH  +++TQ+YT
Sbjct: 249 QRQIQMRMKRNAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT 308

Query: 300 NVNSKNGGDWMMEIYDQTHPSITQK 324
           +++ ++    + +IYDQ HP   +K
Sbjct: 309 SLDFQH----LAKIYDQAHPRAKKK 329


>gi|113969139|ref|YP_732932.1| tyrosine recombinase XerD [Shewanella sp. MR-4]
 gi|113883823|gb|ABI37875.1| tyrosine recombinase XerD [Shewanella sp. MR-4]
          Length = 300

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/300 (32%), Positives = 155/300 (51%), Gaps = 16/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L   +GLS  TL +Y  D R F  +     ++   ++ I ++   ++RA+++ R  
Sbjct: 14  FLDDLWSSKGLSDNTLSAYRTDLRHFDRY-----QQSQGLRLI-EVVQADVRAYLAYRVE 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q+    S  R LS ++ F  YL + K      +  + + K S  LP +L+E Q    VD 
Sbjct: 68  QQFARTSSARLLSSLRRFYTYLLQTKQIAGDPMALIESPKLSRQLPDSLSESQ----VDR 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +L   + +   ++ R+ A+L LLY  GLR+SE + LT + +   Q  +RI GKG K R+V
Sbjct: 124 LLAEPNVDDP-VECRDKAMLELLYATGLRVSELVGLTLEQMSLRQGLVRIVGKGGKERLV 182

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+       +  Y      +L  N+Q  + F   R + +    F   I+      G+   
Sbjct: 183 PMGELAITEVERYLSSARHELLGNVQSDVVFPSKRSQMMTRQTFWHRIKLYASRAGIETE 242

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ Q HP
Sbjct: 243 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARAR----LQELHQQHHP 298


>gi|229086384|ref|ZP_04218560.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-44]
 gi|228696900|gb|EEL49709.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-44]
          Length = 302

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/313 (31%), Positives = 161/313 (51%), Gaps = 35/313 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R +++  
Sbjct: 11  QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYVDVRLYLTTL 65

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137
             +K+  +S+ R +S ++S  ++L  R+   E N   + +L KK  S+P+ L  ++    
Sbjct: 66  HDEKLARKSVARKVSSLRSLYRFLM-REGYREDNPFALASLPKKEWSIPKFLYVEEL--- 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               L   S     +  RN A+L L+Y  G+R+SE +SL   +I     T+ + GKG K 
Sbjct: 122 --EKLFEVSDVKTPLGQRNQALLELMYATGIRVSECVSLQFTDIDFSVGTILVTGKGKKQ 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPL-NPGVFQRYI 247
           R +P     + A+  Y +      N   QL          +F   +G PL + GV  RYI
Sbjct: 180 RYIPFGSYAQDALTTYIE------NGRKQLAKKTEEHSQMVFLNAKGAPLTDRGV--RYI 231

Query: 248 -RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
              L +   L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +  
Sbjct: 232 LNDLIKKASLTMKISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER- 290

Query: 307 GDWMMEIYDQTHP 319
              +  +Y + HP
Sbjct: 291 ---LRSVYMKHHP 300


>gi|148273162|ref|YP_001222723.1| site-specific tyrosine recombinase XerD [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147831092|emb|CAN02037.1| integrase/recombinase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 328

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/332 (29%), Positives = 156/332 (46%), Gaps = 38/332 (11%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA----------FY 53
           + +PE V   L +    WL+++E+ERGLS+ TLQ+Y  D  ++   LA            
Sbjct: 14  DAVPE-VPVALRRAVDRWLRHVEVERGLSRNTLQAYRRDLARYTAHLADEGVADPADASA 72

Query: 54  TEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI 113
                  Q +R   +  + A             SL R LS ++SF ++L +  I      
Sbjct: 73  AHIAAFAQRVRDPEHGGLTA------------SSLARMLSSVRSFHRFLVEEGIVEVDVS 120

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
              R  K  + LP+A++ +    ++D      +   + +  R+ A+L LLY  G R+SE 
Sbjct: 121 AEQRPPKLPSRLPKAVSIETMGRILD-----ATDGDEPLRVRDKALLELLYATGARVSEI 175

Query: 174 LSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLP 228
            +LT  +++         +R+ GKG K RIVP+    R+A+  Y   + P         P
Sbjct: 176 TALTVDDVLGADGAAAELVRVLGKGGKQRIVPVGSFARRAVDAYLVRVRPILAARGSATP 235

Query: 229 -LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
            LF G+RG  L+       I+      G+    + HT RHSFATHL++ G D+R +Q +L
Sbjct: 236 ALFLGLRGHALSRQNAWLVIKAAAERAGVAEEISPHTFRHSFATHLIAGGADVRVVQELL 295

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           GH  ++TTQIYT V      D + ++Y   HP
Sbjct: 296 GHSSVATTQIYTRVTV----DTLRDVYTTAHP 323


>gi|291280177|ref|YP_003497012.1| tyrosine recombinase [Deferribacter desulfuricans SSM1]
 gi|290754879|dbj|BAI81256.1| tyrosine recombinase [Deferribacter desulfuricans SSM1]
          Length = 302

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/310 (30%), Positives = 163/310 (52%), Gaps = 22/310 (7%)

Query: 15  LKERQNWLQNLEI-ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LKE  ++ +N  I ER +S  T++SY  D    + F+    E+K    +++++ Y  +R 
Sbjct: 3   LKEAIDYFENYLISERQVSSNTVKSYLNDLNDLVSFIK--DEDK----SLKEIDYFALRM 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F++    +     S++R ++ ++SF K+L KR +  ++    ++  KK   L    +   
Sbjct: 57  FVAYLYDKGFSKSSIERKIATLRSFFKFLIKRGLIEDNPARMIKFPKKDKKLFTVFD--- 113

Query: 134 ALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
               +D +  LL    +      R++ IL  LYG G+R+SE +++   +I      +RI 
Sbjct: 114 ----IDTIFSLLELPDKETPSGIRDALILEFLYGTGVRVSELVNIKLDDIDFGGMRVRIF 169

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQ 249
           GKG K+R++PL   +   I +Y  +    +   I     LF    G  L     +R + +
Sbjct: 170 GKGKKMRVIPLSDYIMDLIKKYLSVRENIVQKGIVNTDHLFINKFGTALTDRSVRRIVDK 229

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +  GLPL+ + H+ RH+FATHLL NG DLR+IQ +LGH  L+TTQ YT++N       
Sbjct: 230 YLKKAGLPLNYSPHSFRHTFATHLLENGADLRTIQKLLGHSSLATTQKYTHLNLSE---- 285

Query: 310 MMEIYDQTHP 319
           ++++YD+THP
Sbjct: 286 ILKVYDKTHP 295


>gi|52141657|ref|YP_085172.1| site-specific tyrosine recombinase XerC [Bacillus cereus E33L]
 gi|51975126|gb|AAU16676.1| site-specific integrase/recombinase XerD protein [Bacillus cereus
           E33L]
          Length = 299

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 159/311 (51%), Gaps = 31/311 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R +++  
Sbjct: 8   QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDITYADVRLYLTTL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137
             +K+  +S+ R +S ++S  ++L  R+   + N   + +L KK  S+P+ L  ++    
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               L   S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG K 
Sbjct: 119 --EELFEVSDTATPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248
           R +P     + A++ Y +      N   QL          +F   +G PL     +  + 
Sbjct: 177 RYIPFGSYAQDALITYIE------NGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLN 230

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L +   L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+     +
Sbjct: 231 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 286

Query: 309 WMMEIYDQTHP 319
            +  +Y + HP
Sbjct: 287 RLRSVYMKHHP 297


>gi|330969023|gb|EGH69089.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 298

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 149/308 (48%), Gaps = 32/308 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKRR 79
           +L  L +E+GLS  T  SY  D     +F  +  E  +  I   R++    I   ++ R 
Sbjct: 12  FLDALWLEKGLSDNTRDSYRSD---LALFNGWLQERNVDLISAGREV----ILDHLAWRV 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                 RS  R LSG + F +YL + K+      L +   +    LP++L+E        
Sbjct: 65  ENAYKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADV----- 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL     ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K R+
Sbjct: 120 EALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179

Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           VP+           +R A  E     P D+       LF   RG  +    F   I+   
Sbjct: 180 VPMGEESIVWVERYLRGARDELLGGKPSDV-------LFPSTRGDQMTRQTFWHRIKHQA 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+  S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + 
Sbjct: 233 TVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288

Query: 312 EIYDQTHP 319
           E++ + HP
Sbjct: 289 EMHARHHP 296


>gi|326335596|ref|ZP_08201783.1| integrase/recombinase XerD [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325692362|gb|EGD34314.1| integrase/recombinase XerD [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 297

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/315 (30%), Positives = 164/315 (52%), Gaps = 31/315 (9%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +LLK+ +++L+   IERG+S+ ++ SY  D  +   F+A +  E+  +     +S   +R
Sbjct: 4   KLLKDFEHYLK---IERGMSENSVHSYLFDMEKLREFVAIHQIEETPVN----ISAETLR 56

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            FI +   +++  RS  R +S +KSF K+L       +  +  +   K    LP  L+ +
Sbjct: 57  MFIYEV-GKELHARSQSRLISALKSFFKFLLLENYREDFPMETIDTPKFGMKLPDTLSLE 115

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   ++  + L T         RN AI+  LYGCGLR+SE ++L   ++   +  +R+ G
Sbjct: 116 EIDAIIAGIDLSTEE-----GHRNRAIIETLYGCGLRVSELVNLHLSDLFFSEGFIRVLG 170

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL--------FRGIRGKPLNPGVFQ 244
           KG+K R+VP+    +K I  Y       L+    +P+        F   RGK L   +  
Sbjct: 171 KGNKQRLVPISEYTQKEINNYI------LHQRKNIPIVKEFSDIVFLNRRGKQLTRAMIF 224

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             I+Q    +GL  + + HT RHSFATHLL NG +LR+IQ +LGH  + TT+IYT+++  
Sbjct: 225 TIIKQAASAIGLTKTISPHTFRHSFATHLLENGANLRAIQLMLGHESIITTEIYTHIDH- 283

Query: 305 NGGDWMMEIYDQTHP 319
               ++ ++ +  HP
Sbjct: 284 ---SYLSQVINTYHP 295


>gi|227498489|ref|ZP_03928635.1| tyrosine recombinase xerC [Acidaminococcus sp. D21]
 gi|226903947|gb|EEH89865.1| tyrosine recombinase xerC [Acidaminococcus sp. D21]
          Length = 302

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 156/312 (50%), Gaps = 32/312 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L +ER  S  T+ +Y+ D   F +FL+   +      T  ++S  +IR+++++ 
Sbjct: 10  ERFLRYLRVERNDSPNTILNYKDDLIAFSVFLSGRGK-----ATWLEVSLLDIRSYLAQL 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             ++   R++ R +S ++SF +YL +  +T ++    ++  K    LP  L E +     
Sbjct: 65  HREEKARRTIARRISSLRSFYRYLMREGLTDKNPFTKVKTPKLEKKLPVFLEEFEM---- 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            N LL     +  +  R+ A+L  LY  G R+SE + LT   +        + GKG K R
Sbjct: 121 -NHLLELPDLSTELGQRDRALLEFLYSTGCRVSELVGLTLTRLDLSNRYALLLGKGHKER 179

Query: 199 IVPL-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           IVPL           L   R+ ++E Y++   D        +F   RG PL     +R +
Sbjct: 180 IVPLGHPCIRAMNAYLTGARRVLMEKYEVPSHDF-------IFVNHRGTPLTARSVRRIL 232

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +      +    + HT+RH+FATHLL +G DLRS+Q +LGH  LSTTQIYT+V +    
Sbjct: 233 DRYVEMASIQKHVSPHTIRHTFATHLLDHGADLRSVQELLGHASLSTTQIYTHVTA---- 288

Query: 308 DWMMEIYDQTHP 319
           D +  +Y + HP
Sbjct: 289 DRIASVYKKHHP 300


>gi|197285863|ref|YP_002151735.1| tyrosine recombinase [Proteus mirabilis HI4320]
 gi|227356364|ref|ZP_03840752.1| tyrosine recombinase [Proteus mirabilis ATCC 29906]
 gi|34222762|sp|O31206|XERD_PROMI RecName: Full=Tyrosine recombinase xerD
 gi|2645800|gb|AAB87499.1| site-specific recombinase [Proteus mirabilis]
 gi|194683350|emb|CAR44057.1| tyrosine recombinase [Proteus mirabilis HI4320]
 gi|227163474|gb|EEI48395.1| tyrosine recombinase [Proteus mirabilis ATCC 29906]
          Length = 313

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 157/303 (51%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L ++ +E+GLS  TL +Y  D +    +L       +++ T+      ++ AF++ R
Sbjct: 24  EQFLDSIWLEQGLSANTLSAYRLDLQALSQWLVTQKLNWLSVTTL------DLHAFLATR 77

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S  R LS ++ F +YL + K+  +     +   K    LP+ L+E+Q    V
Sbjct: 78  LDEGYKATSAARLLSTLRRFFQYLYREKLRQDDPSALLSTPKLPKRLPKDLSEQQ----V 133

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +N LL      + I+ R+ A+L +LY CGLR+SE + L+  +I   Q  LR+ GKGDK R
Sbjct: 134 EN-LLSAPCIDEPIELRDKAMLEVLYACGLRVSELVGLSLSDISLRQGVLRVIGKGDKER 192

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       + +Y     P  +       +F  +RG+ +    F   I+      G+ 
Sbjct: 193 LVPLGEEAIYWLEQYLQYGRPALMQGKTDDIVFPSLRGQKMTRQTFWHRIKHYAVIAGID 252

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  ++ Q
Sbjct: 253 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKVLHQQ 308

Query: 317 THP 319
            HP
Sbjct: 309 HHP 311


>gi|330970503|gb|EGH70569.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 299

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 152/306 (49%), Gaps = 21/306 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +  +L  ER +S  TL++Y  D  + L +      +K  + +   L    +R+F +++  
Sbjct: 8   YCMHLRSERQVSPHTLEAYRRDLGKVLAYC-----QKAQVSSWSDLDIQHLRSFTARQHQ 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q    RSL R LS ++ F KYL +  I        +   K    LP+ L+  +A  L+D 
Sbjct: 63  QGQSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRAAQLLDG 122

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +     E  ++  R+ AIL LLY  GLR+SE   L    +      +++ GKG K R++
Sbjct: 123 GV-----EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVL 177

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPL 258
           P+    R+A LE +   P     N Q   +F   +GK L P   Q  ++    R LG  L
Sbjct: 178 PVGSKARQA-LEVW--LPLRALTNPQDDAVFVSQQGKRLGPRAIQVRLKAAGERELGQNL 234

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +YD  H
Sbjct: 235 HP--HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAH 288

Query: 319 PSITQK 324
           P   +K
Sbjct: 289 PRAKRK 294


>gi|66043455|ref|YP_233296.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           syringae B728a]
 gi|75503929|sp|Q500B4|XERC_PSEU2 RecName: Full=Tyrosine recombinase xerC
 gi|63254162|gb|AAY35258.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 299

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 152/306 (49%), Gaps = 21/306 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +  +L  ER +S  TL++Y  D  + L +      +K  + +   L    +R+F +++  
Sbjct: 8   YCMHLRSERQVSPHTLEAYRRDLGKVLAYC-----QKAQVSSWSDLDIQHLRSFTARQHQ 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q    RSL R LS ++ F KYL +  I        +   K    LP+ L+  +A  L+D 
Sbjct: 63  QGQSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRAAQLLDG 122

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +     E  ++  R+ AIL LLY  GLR+SE   L    +      +++ GKG K R++
Sbjct: 123 GV-----EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVL 177

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPL 258
           P+    R+A LE +   P     N Q   +F   +GK L P   Q  ++    R LG  L
Sbjct: 178 PVGSKARQA-LEVW--LPLRALTNPQDDAVFVSQQGKRLGPRAIQVRLKAAGERELGQNL 234

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +YD  H
Sbjct: 235 HP--HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAH 288

Query: 319 PSITQK 324
           P   +K
Sbjct: 289 PRAKRK 294


>gi|332297599|ref|YP_004439521.1| Tyrosine recombinase xerC [Treponema brennaborense DSM 12168]
 gi|332180702|gb|AEE16390.1| Tyrosine recombinase xerC [Treponema brennaborense DSM 12168]
          Length = 311

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/271 (30%), Positives = 152/271 (56%), Gaps = 10/271 (3%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
           +T ++Y      FL +L      +   Q + +++  ++  ++ +R+T    + ++ + +S
Sbjct: 32  MTAETYSGAVSLFLDWLQKKHPAESVEQALERVTVQDLLYYLVQRKTVGADELTIAKDIS 91

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            ++SF  +L  R + +E+    +   K   +LPR L+ +Q  T ++ + +     ++ + 
Sbjct: 92  ALRSFGNFLVARHVWSENCACLLERPKARRALPRVLSPEQVETFLNAIDV-----SEPLG 146

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            R+ A+  L+Y CGLRISEA  L  QN+   +  + ++GKGDK RIVP   +  + +  +
Sbjct: 147 VRDRALFELIYSCGLRISEASGLLLQNLHLKERIVLVRGKGDKERIVPFGDAALRWLSSW 206

Query: 214 YDLCPFDLNLNIQLP-LFRGIRGKPLN-PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
                  L  + Q+P +F   +G PL+  G+++R+ +++    G+  S   HTLRHSFAT
Sbjct: 207 LSEYRPQLVGSRQIPYVFVNYKGMPLSRKGIWKRF-QEIEVRSGV--SAKVHTLRHSFAT 263

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           HLL+ G DLRS+Q +LGH  L TTQIYT+++
Sbjct: 264 HLLAGGADLRSVQELLGHSDLVTTQIYTHID 294


>gi|189485661|ref|YP_001956602.1| tyrosine recombinase XerD [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287620|dbj|BAG14141.1| tyrosine recombinase XerD [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 294

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 166/300 (55%), Gaps = 17/300 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +++  + +E+GLS+ T+ +Y+ D    L F+ F  +++I+++      + +I  F+ + +
Sbjct: 10  DFISYIIVEKGLSENTVLAYKADV---LKFINFAKKKRISLE---NFEHNDITDFLWEMK 63

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           T+ +  RS+ R +  ++ F K+L    +   +  L +     + +LP  L +      VD
Sbjct: 64  TEGLKPRSIFRVIESLRQFYKFLNSEDLAKNNPTLYL----ATPNLPENLPDILTFDEVD 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            +LL++ ++   +  RN A+L LLY  GLR+SE ++L   +I  +   LRI GKG K R+
Sbjct: 120 -LLLNSINDDDEMHIRNKAMLELLYAAGLRVSELINLKFSDINLEDCFLRIIGKGSKERL 178

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VP     +  I  Y       LN+N  + + R   GK L+   F R ++ + + +G+  +
Sbjct: 179 VPFGNKAKFFISIYLKKRRPCLNVNDHIFISR--LGKKLSRIEFWRQLKNIAKNVGINKN 236

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T HTLRHSFA+HLL  G D+R +Q +LGH  ++TTQIYT+++     D +++ + + HP
Sbjct: 237 ITPHTLRHSFASHLLKGGADIRFVQEMLGHASITTTQIYTHLDE----DRIVQQHKKFHP 292


>gi|330950740|gb|EGH51000.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae Cit
           7]
          Length = 298

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 150/308 (48%), Gaps = 32/308 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKRR 79
           +L  L +E+GLS  T  SY  D     +F  +  E  +  I   R++    I   ++ R 
Sbjct: 12  FLDALWLEKGLSDNTRDSYRSD---LALFNGWLQERNVDLISAGREV----ILDHLAWRV 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                 RS  R LSG + F +YL + K+ +    L +   +    LP++L+E        
Sbjct: 65  ENAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADV----- 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL     ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K R+
Sbjct: 120 EALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179

Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           VP+           +R A  E     P D+       LF   RG  +    F   I+   
Sbjct: 180 VPMGEESIVWVERYLRGARDELLGGKPSDV-------LFPSSRGDQMTRQTFWHRIKHQA 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+  S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + 
Sbjct: 233 TVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288

Query: 312 EIYDQTHP 319
           E++ + HP
Sbjct: 289 ELHAKHHP 296


>gi|261820181|ref|YP_003258287.1| site-specific tyrosine recombinase XerD [Pectobacterium wasabiae
           WPP163]
 gi|261604194|gb|ACX86680.1| tyrosine recombinase XerD [Pectobacterium wasabiae WPP163]
          Length = 299

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 156/304 (51%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER L++ TL SY  D R    +LA    + + +Q +      +++AF++ R
Sbjct: 10  EQFLDALWLERNLAENTLASYRLDLRTLAEWLAHRDNDFLQVQAL------DLQAFLADR 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++ F +YL + K+ ++     + + K    LP+ L+E Q   L+
Sbjct: 64  VDGGYKATSSARLLSAMRRFFQYLYREKLRSDDPSAVLSSPKLPLRLPKDLSEAQVGALL 123

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D   +        ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K R
Sbjct: 124 DAPSIEQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVLGKGNKER 178

Query: 199 IVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL       I EYY     P+ LN      LF   R + +    F   I+       +
Sbjct: 179 LVPLGEEAVYWI-EYYLEHGRPWLLNGQTLDVLFPSNRARQMTRQTFWHRIKHYAVQASI 237

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 238 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQ 293

Query: 316 QTHP 319
           Q HP
Sbjct: 294 QHHP 297


>gi|170693977|ref|ZP_02885133.1| tyrosine recombinase XerC [Burkholderia graminis C4D1M]
 gi|170141049|gb|EDT09221.1| tyrosine recombinase XerC [Burkholderia graminis C4D1M]
          Length = 307

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 154/317 (48%), Gaps = 31/317 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L NLE ER LS  TL+ Y  +  Q  +            + +  L+  ++R  +S+   
Sbjct: 10  YLSNLEHERRLSAHTLRGYTHELEQLRLL--------AKGRPLESLTAVDVRGAVSRAHA 61

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS+   LS  ++F ++L  R     + +  +R  K+  +LP+AL+   A     N
Sbjct: 62  GGLTARSISHRLSAWRAFYRWLAGRIDLPANPVATVRAPKQPKALPKALSVDDA-----N 116

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD------------DQSTL 188
            L+ +         R+ A+L L Y  GLR+SE + L  +   D            D + +
Sbjct: 117 RLMESPPAASAEGLRDHAMLELFYSSGLRLSELVGLDAR-FADADGYRSAGWLKLDSAEV 175

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG + RIVP+      A+  +  +    +  +   PLF   RG  L+P V +  ++
Sbjct: 176 EVLGKGKRRRIVPVGSKALTALNAWLAVRDQMVKHDPH-PLFLSARGNRLSPNVVRERVK 234

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     G+P +   H LRHSFATH+L + GDLR++Q +LGH  ++ TQ+YT ++ ++   
Sbjct: 235 RAALLAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTGLDFQH--- 291

Query: 309 WMMEIYDQTHPSITQKD 325
            +  +YDQ HP   +++
Sbjct: 292 -LARVYDQAHPRAKKRE 307


>gi|32474020|ref|NP_867014.1| integrase/recombinase [Rhodopirellula baltica SH 1]
 gi|32444557|emb|CAD74556.1| integrase/recombinase [Rhodopirellula baltica SH 1]
 gi|327543299|gb|EGF29732.1| integrase/recombinase [Rhodopirellula baltica WH47]
          Length = 300

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 146/302 (48%), Gaps = 15/302 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +LQ +  ER  S LT+++Y  D   F  ++      +I + +   L+  ++R F +  + 
Sbjct: 8   FLQYMATERNASDLTIKAYREDLFAFAEWIGQAEAGRIQLDS---LTPQQLRQFQAALQQ 64

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                 ++ R L+ ++SF K+  +  + + +    +RN + S  LP  L  ++       
Sbjct: 65  AGYARTTIARKLASLRSFFKFAMREGMASSNPAKPLRNPRSSRKLPHVLTSEEV-----G 119

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL           R+ AIL  +Y  GLR+SE + L   ++   Q   R++GKG K RI 
Sbjct: 120 RLLVAPPAISEAGLRDRAILETMYSSGLRVSELVGLRDGDLDFSQGITRVRGKGRKERIS 179

Query: 201 PLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           PL     KAI  Y       P    L    P+F    G  L      R + +      L 
Sbjct: 180 PLGSYAIKAIQAYAGRRSRSPESEKLGRAAPVFVNRFGNILTTRSVGRMLEKYIAKAELD 239

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
             T+ HTLRHSFATHLL  G D+RS+Q +LGH  L+TTQIYT+V++ N    + ++Y++ 
Sbjct: 240 TRTSPHTLRHSFATHLLDRGADIRSVQELLGHKSLTTTQIYTHVSAAN----LRQVYEKA 295

Query: 318 HP 319
           HP
Sbjct: 296 HP 297


>gi|289209264|ref|YP_003461330.1| tyrosine recombinase XerD [Thioalkalivibrio sp. K90mix]
 gi|288944895|gb|ADC72594.1| tyrosine recombinase XerD [Thioalkalivibrio sp. K90mix]
          Length = 301

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/310 (31%), Positives = 148/310 (47%), Gaps = 35/310 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L    GLS  TL +Y  D    L  LA +   +     +   S  ++ AF+S R  
Sbjct: 14  FLDELWAVEGLSDHTLAAYRRD----LEALARWLHGRGV--ALEAASSADLLAFVSARMQ 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                +S+ R+LS I+ F +YL  +    +     + + +    LP +L+E Q   L+  
Sbjct: 68  AGARPKSITRALSSIRRFYRYLVHQGEREDDPSAGIESPRAGRPLPDSLSETQVNALLAA 127

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             LHT      +  R+ A+L L+Y  GLR+SE + L    +   Q  +RI GKGDK R+V
Sbjct: 128 PELHTE-----VGLRDRAMLELMYATGLRVSELVGLEQSEVNSRQGVVRITGKGDKERLV 182

Query: 201 PL-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           PL           L   R A++  +   P D        +F   RG+ L    F   I+ 
Sbjct: 183 PLGEEAAHWLARYLREARGALMSGH--PPVDT-------VFVTRRGRGLTRQAFWYRIKH 233

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +  G+ +  + HTLRH+FATHLL +G DLR +Q +LGH  LSTTQIYT+V        
Sbjct: 234 YAQVAGIEVPLSPHTLRHAFATHLLDHGADLRVVQMLLGHSSLSTTQIYTHVARAR---- 289

Query: 310 MMEIYDQTHP 319
           +  ++ + HP
Sbjct: 290 LQSLHAEHHP 299


>gi|56964041|ref|YP_175772.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16]
 gi|56910284|dbj|BAD64811.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16]
          Length = 300

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 155/302 (51%), Gaps = 16/302 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +++ +++E+  SK T+  Y  D +QF  F++        I  I+ + + ++R FIS+  
Sbjct: 11  QFVRYVQVEKNGSKWTIDHYRKDVQQFAAFMS-----AAGIAEIKDVKHQDVRLFISELV 65

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +K   +S+ R LS ++SF K+L +    +E+  L+    K+   LP  L E++    ++
Sbjct: 66  DKKYARKSIARKLSALRSFGKFLMEEGHISENPFLHTHLPKQKTRLPTFLYEEE----ME 121

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           + LL      K ++ R+ AI+ LLY  G+R+SE   L          T+R+ GKG K R 
Sbjct: 122 HWLLALP-ANKPLEKRDKAIIELLYATGMRVSECSMLALDQWDRVSETVRVFGKGRKERY 180

Query: 200 VPLLPSVRKAILEY-YDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           VP+      A+  Y ++  P  L  N     LF   RG  L+    ++ + +      + 
Sbjct: 181 VPVGKMAVSAVESYIHEARPKLLRANDPTSHLFLNYRGGALSDRSIRKIVEKRLDEAAMQ 240

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H +RHSFATHLL+ G DLR++Q +LGH  L TTQ+YT+V+ +     +  +Y   
Sbjct: 241 KKISPHAIRHSFATHLLNAGADLRAVQELLGHQSLKTTQVYTHVSKER----LYAVYKGA 296

Query: 318 HP 319
           HP
Sbjct: 297 HP 298


>gi|255291939|dbj|BAH90427.1| tyrosine recombinase [uncultured bacterium]
          Length = 320

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 156/313 (49%), Gaps = 25/313 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+++ +E+ L+  T+  Y  D  +      F  ++ + +  ++    T +R ++++ 
Sbjct: 16  ERYLEHVRVEKRLAARTVTLYGLDLDKLG---QFAVQDDVGLTAVQG---THVRRWVARM 69

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  R +   LSG + F  +L ++ +   + + ++R  ++   LP+AL   +A+ L 
Sbjct: 70  HAGGRSGRGIALILSGWRGFYAWLGRQGLIAANPVQDVRAPRQPRPLPKALGVDEAVQLA 129

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQN---------IMDDQST 187
           ++V      +  W+DAR++A++ LLYG GLR+ E   L LT  +         I    + 
Sbjct: 130 EHV---AESDDPWLDARDAAMVELLYGSGLRVGELAGLDLTASDAALQAGRGWIDLAGAE 186

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           +++QGKG K R+VPL      A+  +  L             LF G RG  L      + 
Sbjct: 187 VQVQGKGAKRRVVPLGRQAVAALRHWLALRGQVAAVDAAAQALFIGRRGTRLTAQAIWQR 246

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +++     GL      H LRHSFA+HLL + GDLR++Q +LGH  + TTQ+YT ++ ++ 
Sbjct: 247 LKRRSLQAGLATPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANIGTTQVYTRLDFQH- 305

Query: 307 GDWMMEIYDQTHP 319
              + + YD  HP
Sbjct: 306 ---LAQAYDAAHP 315


>gi|237800088|ref|ZP_04588549.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022943|gb|EGI03000.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 298

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 149/308 (48%), Gaps = 32/308 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKRR 79
           +L  L +E+GLS  T  SY  D     +F  +  E  + +    R++    I   ++ R 
Sbjct: 12  FLDALWLEKGLSDNTRDSYRSD---LALFNGWLQERNVDLPVAGREV----ILDHLAWRV 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                 RS  R LSG + F +YL + K+      L +   +    LP++L+E        
Sbjct: 65  ENAYKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADV----- 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL     ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K R+
Sbjct: 120 EALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179

Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           VP+           +R A  E     P D+       LF   RG  +    F   I+   
Sbjct: 180 VPMGEEAIVWVERYMRGARDELLGGKPSDV-------LFPSTRGDQMTRQTFWHRIKHQA 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+  S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + 
Sbjct: 233 TVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288

Query: 312 EIYDQTHP 319
           E++ + HP
Sbjct: 289 EMHAKHHP 296


>gi|228954107|ref|ZP_04116136.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|229071329|ref|ZP_04204552.1| Tyrosine recombinase xerC [Bacillus cereus F65185]
 gi|229081086|ref|ZP_04213596.1| Tyrosine recombinase xerC [Bacillus cereus Rock4-2]
 gi|229192000|ref|ZP_04318970.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 10876]
 gi|228591551|gb|EEK49400.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 10876]
 gi|228702130|gb|EEL54606.1| Tyrosine recombinase xerC [Bacillus cereus Rock4-2]
 gi|228711783|gb|EEL63735.1| Tyrosine recombinase xerC [Bacillus cereus F65185]
 gi|228805673|gb|EEM52263.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 299

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 162/308 (52%), Gaps = 25/308 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R +++  
Sbjct: 8   QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYLTTL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137
             +K+  +S+ R +S ++S  ++L  R+   + N   + +L KK  S+P+ L  ++    
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               L   S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG K 
Sbjct: 119 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176

Query: 198 RIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           R +P     + +++ Y +      +   D + ++   +F   +GKPL     +  + +L 
Sbjct: 177 RYIPFGSYAQDSLITYIENGRKQLVNKTDEDSHM---VFLNAKGKPLTSRGVRYVLNELI 233

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +   L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+     + + 
Sbjct: 234 KKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----ERLR 289

Query: 312 EIYDQTHP 319
            +Y + HP
Sbjct: 290 SVYMKHHP 297


>gi|229117317|ref|ZP_04246695.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-3]
 gi|228666217|gb|EEL21681.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-3]
          Length = 302

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 161/311 (51%), Gaps = 31/311 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R +++  
Sbjct: 11  QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYLTTL 65

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137
             +K+  +S+ R +S ++S  ++L  R+   + N   + +L KK  S+P+ L  ++   L
Sbjct: 66  HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEELEEL 124

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            +   + T      +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG K 
Sbjct: 125 FEVSDMETP-----LGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248
           R +P     + A++ Y +      N   QL          +F   +G PL     +  + 
Sbjct: 180 RYIPFGSYAQDALITYME------NGRKQLANKTEEQSHMVFLNAKGTPLTSRGVRYVLN 233

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L +   L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+     +
Sbjct: 234 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 289

Query: 309 WMMEIYDQTHP 319
            +  +Y + HP
Sbjct: 290 RLRSVYMKHHP 300


>gi|226227035|ref|YP_002761141.1| tyrosine recombinase XerD [Gemmatimonas aurantiaca T-27]
 gi|226090226|dbj|BAH38671.1| tyrosine recombinase XerD [Gemmatimonas aurantiaca T-27]
          Length = 312

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 157/304 (51%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +   L+IE G S  T+++Y  D     +         + I   + ++   +R F+   
Sbjct: 23  QAFEDALQIEEGASPRTIEAYRRD-----VIRCAAQMRAMGITQAKDITPAALREFVYHL 77

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +   +   S++R++S ++++ + +    + T      + + ++  +LP  L+       V
Sbjct: 78  KDLGLAGSSIRRNISALRTWFRIMVAEGLVTTDPTERLDSPQRWRTLPEVLS-------V 130

Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           D V  LL      + +  R+ A+L L YG GLR+SE + ++ +++M + S +R+ GKG+K
Sbjct: 131 DEVTRLLAAPGLDERLAFRDRAMLELAYGAGLRVSEWIGMSVKDVMLEDSLVRVLGKGNK 190

Query: 197 IRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R+VP+  S   A+  Y  +L P       +  LF   RG PL+     + +R+     G
Sbjct: 191 ERLVPIGRSAIGAVAVYLRELRPVLERGGGKGILFLNGRGAPLSRMGAWKLVRKYVGMAG 250

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + HTLRHSFATHLL  G DLR++Q +LGH  ++TTQIYT+V+     +++  ++ 
Sbjct: 251 IEKPVSPHTLRHSFATHLLEGGADLRAVQEMLGHADIATTQIYTHVDR----EYLRSVHR 306

Query: 316 QTHP 319
           Q HP
Sbjct: 307 QFHP 310


>gi|146305305|ref|YP_001185770.1| site-specific tyrosine recombinase XerC [Pseudomonas mendocina ymp]
 gi|145573506|gb|ABP83038.1| tyrosine recombinase XerC subunit [Pseudomonas mendocina ymp]
          Length = 315

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 98/320 (30%), Positives = 156/320 (48%), Gaps = 29/320 (9%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           V+FE       +L++L  ER +S  TL  Y  D  + L F      E   +     L   
Sbjct: 16  VTFE--AHLDAYLEHLRRERQVSVHTLDGYRRDLGKLLAFC-----EAEGLSDWAALDTR 68

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R  I++   Q +  RSL R LS  +   +YL +  +        +   K+   LPR L
Sbjct: 69  SLRRLIARLHAQGLASRSLARLLSATRGLYQYLLREGLCRHDPAAGLSPPKRERRLPRTL 128

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  ++  L+D  +     E  +I  R+ A+L L Y  GLR+SE + L    +      +R
Sbjct: 129 DADRSAQLLDGAV-----EDDFIARRDQAMLELFYSSGLRLSELVGLDVDGLDLPAGLVR 183

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
           ++GKG+K R +P+    R+A+ ++  L     P D  +      F   +G+ L P   Q 
Sbjct: 184 VRGKGNKTRELPVGSMARQALEQWLPLRKLAGPSDGAV------FISQQGRRLGPRAVQL 237

Query: 246 YIRQLR-RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            +RQ   R LG  L    H LRHSFA+H+L +  DLR++Q +LGH  ++TTQIYT+++ +
Sbjct: 238 RVRQAGVRELGQHLHP--HMLRHSFASHMLESSQDLRAVQELLGHADIATTQIYTHLDFQ 295

Query: 305 NGGDWMMEIYDQTHPSITQK 324
           +    +  +YDQ HP   +K
Sbjct: 296 H----LATVYDQAHPRAKRK 311


>gi|253997885|ref|YP_003049948.1| tyrosine recombinase XerC [Methylovorus sp. SIP3-4]
 gi|253984564|gb|ACT49421.1| tyrosine recombinase XerC [Methylovorus sp. SIP3-4]
          Length = 292

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 157/304 (51%), Gaps = 19/304 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L  ER LS LT ++Y+ D R   + L    E  +     + ++ T IR  ++    
Sbjct: 8   YLDHLSHERRLSPLTRENYQRDLR---VLLELNGEVPL-----QNMTGTHIRRHVATLHG 59

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +G RS+ R LS  + F ++L +R   + +    +R  K   SLP AL+  QA+ LV  
Sbjct: 60  RNLGGRSIARMLSAWRGFFEFLIQRHGFSANPCQGIRAPKSPKSLPHALSPDQAVQLV-- 117

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
               +  +   +  R+ A+L L Y  GLR++E ++L    +   + T+ + GKG+K RIV
Sbjct: 118 ----SIDDEDTLAQRDHAMLELFYSSGLRLAELVNLDLDALNLGEGTITVTGKGNKTRIV 173

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+      A L+ +      L +     LF    GK L+    Q  ++Q     G+ +  
Sbjct: 174 PVGQHAMNA-LQAWLAIRSGLPIQDTSALFLSRLGKRLSRRAVQYRLQQWAIRQGINIRV 232

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
             H LRHSFA+H+L + GDLR++Q +LGH  +STTQ+YT+++  +    + ++YD  HP 
Sbjct: 233 HPHMLRHSFASHVLQSSGDLRAVQEMLGHANISTTQVYTHLDFHH----LAKVYDSAHPR 288

Query: 321 ITQK 324
             +K
Sbjct: 289 ARKK 292


>gi|294139500|ref|YP_003555478.1| integrase/recombinase XerD [Shewanella violacea DSS12]
 gi|293325969|dbj|BAJ00700.1| integrase/recombinase XerD [Shewanella violacea DSS12]
          Length = 305

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/300 (32%), Positives = 151/300 (50%), Gaps = 16/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L   RGLS  TL +Y  D R F  ++     E +      Q+S   IR ++  R  
Sbjct: 19  FLDDLWSNRGLSDNTLAAYRTDLRHFDRYIQELGAELV------QVSQELIRGYLDVRFD 72

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     S  R +S ++ F  +L  +K+ T   I  +++ K +  LP +L+E        +
Sbjct: 73  KGFARTSSARMMSSLRRFFGFLLLKKMITADPIARIKSPKLARKLPDSLSEADV-----D 127

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +LL+       I+ R+ A+L LLY  GLR++E +SLT + +   Q  +R+ GKG K R+V
Sbjct: 128 ILLNEPDIQDPIECRDRAMLELLYATGLRVTELVSLTMEQLSLRQGLVRVVGKGGKERLV 187

Query: 201 PLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           PL       +  Y      +L    +   LF   RG+ +    F   I+      G+   
Sbjct: 188 PLGELAVSEVENYLQGARAELLKGKLSDVLFPSKRGQMMARQTFWYRIKLYALRAGIVTH 247

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + +++ + HP
Sbjct: 248 ISPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKAR----LSQLHSEHHP 303


>gi|119505219|ref|ZP_01627294.1| site-specific tyrosine recombinase XerD [marine gamma
           proteobacterium HTCC2080]
 gi|119458910|gb|EAW40010.1| site-specific tyrosine recombinase XerD [marine gamma
           proteobacterium HTCC2080]
          Length = 282

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/297 (30%), Positives = 152/297 (51%), Gaps = 21/297 (7%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +ERGLS+ TL +Y  D   +  +LA  T E +          ++I++++  +  Q    R
Sbjct: 1   MERGLSENTLAAYRRDLSLYDEWLAEQTAESLLTA-----GSSQIQSYLGLKLRQGASPR 55

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R LS  +SF ++  +     E   L + + K+   LP++L+E     L+    L  +
Sbjct: 56  SSARFLSAARSFYRWALREGHIVEDPTLRIESPKQGRPLPKSLSETDVERLLGAPDLELA 115

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                ++ R+  +L +LY CGLR+SE + L  + +  +Q  +R+ GKG K R+VP+    
Sbjct: 116 -----LEFRDRTMLEMLYACGLRVSELVGLQVEQVGLNQGIVRVLGKGGKERLVPMGEEA 170

Query: 207 RKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
              +++Y      +L    + N+   LF   R + +    F   I+      G+    + 
Sbjct: 171 LDWLIQYMRGPRIELLKGQSSNV---LFPSNRSREMTRQTFWYRIKLYGERAGIQSHLSP 227

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V  +     M E+++  HP
Sbjct: 228 HTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKQR----MQELHEHHHP 280


>gi|71897645|ref|ZP_00679890.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71732548|gb|EAO34601.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
          Length = 277

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 148/296 (50%), Gaps = 19/296 (6%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +S  TL +Y    R     +A+  ++   +  +  L   +++AF+S    + +  +SL+R
Sbjct: 1   MSSHTLDAYR---RDIGALIAWGGQQ--AVGEVVALDRAQLQAFVSAEHRRGLSAKSLQR 55

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            LS  + F  +L KR     +    +R  K    LPR L+  +A++ V         +T 
Sbjct: 56  RLSACRGFYTWLVKRGHIAVNPAAGLRAPKALRKLPRILDADEAVSFV-----QIPTDTP 110

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
            +  R+ A+L L Y  GLR+SE   L    +  D   + + GKG + R+VP+      A+
Sbjct: 111 -LGLRDRALLELFYSSGLRLSELCGLRWDGLDLDAGLVSVLGKGSRQRVVPVGSYALSAL 169

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            E+   C        Q P+F G  G P++    Q  I+QL +  G+      H LRHSFA
Sbjct: 170 REW---CASSGG-GAQQPVFPGRYGGPISARAVQVRIKQLAQRQGMAKHVHPHMLRHSFA 225

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
           +HLL + GDLR +Q +LGH  ++TTQIYT+++ +    ++ ++YD  HP   +K +
Sbjct: 226 SHLLESSGDLRGVQELLGHADITTTQIYTHLDFQ----YLSKVYDAAHPRARRKAR 277


>gi|226311968|ref|YP_002771862.1| tyrosine recombinase [Brevibacillus brevis NBRC 100599]
 gi|226094916|dbj|BAH43358.1| probable tyrosine recombinase [Brevibacillus brevis NBRC 100599]
          Length = 295

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 158/300 (52%), Gaps = 15/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  L +E+GLS+ TL+SY+   R  + F ++  E+ +T   +   + T I  ++   R 
Sbjct: 8   FIHFLTVEKGLSRNTLESYQ---RDMVAFTSYLQEQGVT--RVEDSTRTHIIGYLLVLRE 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     +L R+++ I++F ++L + K   +   +++   K    LP+ L+ ++   L+++
Sbjct: 63  KGRATATLSRNMASIRAFYQFLIRDKYIDKDPSIHLETPKIEKRLPKVLSVEEVERLLES 122

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             +  +H       R+ A+L LLY  G+R+SE ++L   ++  D   ++  GKG K RI+
Sbjct: 123 PPV--NHPAGL---RDKAMLELLYATGIRVSELVNLDSADVNLDMGFVKCLGKGSKERII 177

Query: 201 PLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           PL     + +  Y     P  +       LF    GK +    F + I++  +   +   
Sbjct: 178 PLGSVAIQMVRHYLQAGRPKMVKGTGDTALFLNHLGKQITRQGFWKIIKRYAQKSNIRAE 237

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT+V        + +IY +THP
Sbjct: 238 ITPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHVTRTR----IKDIYAKTHP 293


>gi|86131894|ref|ZP_01050491.1| phage integrase family protein [Dokdonia donghaensis MED134]
 gi|85817716|gb|EAQ38890.1| phage integrase family protein [Dokdonia donghaensis MED134]
          Length = 299

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 98/302 (32%), Positives = 154/302 (50%), Gaps = 22/302 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N+   L IERGLS  T+ +Y  D ++    L  Y E+        Q++  +++ FI    
Sbjct: 9   NYKNYLRIERGLSDNTIDNYARDLKK----LTRYLEQLENSINPLQITREDLQEFIYTI- 63

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +++  RS  R +SG+K F  YL      T++ I  + + K    LP  L+E++   L+D
Sbjct: 64  AKEVQARSQARVISGLKGFFNYLVFEDYRTDNPIDLIESPKIGRKLPDTLSEEEIDALID 123

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            + L      K    RN A+L  LY CGLR++E +SL   ++  ++  + + GKGDK R 
Sbjct: 124 AIDL-----GKPQGERNRAMLETLYSCGLRVTELISLKLSDLYFEEGFINVVGKGDKQRF 178

Query: 200 VPLLPSVRKAILEY-------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           VP+    +K I  Y        D+ P  +++     LF   RG+ L   +    I+ L  
Sbjct: 179 VPISEHTQKYINIYRNELRNHIDVKPEHVDI-----LFLNRRGRQLTRAMIFTIIKDLAI 233

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +  + + HT RHSFATHLL NG DLRSIQ +LGH  ++TT+IY +V+  +    M +
Sbjct: 234 KADIKKNISPHTFRHSFATHLLQNGADLRSIQQMLGHESITTTEIYMHVDRNDLAREMAK 293

Query: 313 IY 314
            +
Sbjct: 294 FH 295


>gi|229098300|ref|ZP_04229247.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-29]
 gi|228685198|gb|EEL39129.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-29]
          Length = 302

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 159/311 (51%), Gaps = 31/311 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R +++  
Sbjct: 11  QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYLTTL 65

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137
             +K+  +S+ R +S ++S  ++L  R+   + N   + +L KK  S+P+ L  ++    
Sbjct: 66  HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               L   S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG K 
Sbjct: 122 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248
           R +P     + A++ Y +      N   QL          +F   +G PL     +  + 
Sbjct: 180 RYIPFGSYAQDALITYME------NGRKQLANKTEEQSHMVFLNAKGTPLTSRGVRYVLN 233

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L +   L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+     +
Sbjct: 234 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 289

Query: 309 WMMEIYDQTHP 319
            +  +Y + HP
Sbjct: 290 RLRSVYMKHHP 300


>gi|119946910|ref|YP_944590.1| tyrosine recombinase XerD [Psychromonas ingrahamii 37]
 gi|119865514|gb|ABM04991.1| tyrosine recombinase XerD subunit [Psychromonas ingrahamii 37]
          Length = 298

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/303 (33%), Positives = 156/303 (51%), Gaps = 17/303 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L +L +ERGLS+ TL+SY  D R   IFLA       +  ++  + Y   R  +S  +
Sbjct: 8   QFLDSLWLERGLSQNTLESYRHDLRLVEIFLATRLVSLCSASSLDLIDYFSCR--LSGEK 65

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
             K  + S  R +S ++ + +YL + KI  +     + + K    LP++L+E +    VD
Sbjct: 66  EYK--NASTARLMSALRRYYQYLCREKIREDDPSAKLESPKIIKPLPKSLSESE----VD 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL +   T  +  R+ A+L LLY  GLR+SE + L+ + I   Q  +R+ GKGDK R+
Sbjct: 120 G-LLSSPDLTDSVQFRDKAMLELLYATGLRVSELVGLSMEEINLKQGVVRVTGKGDKTRL 178

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           VPL       +  Y +    DL L  Q    LF   R   +    F   I+   +  G+ 
Sbjct: 179 VPLGEEAIYWVERYIEEARPDL-LKGQSSDVLFPSRRATVMVRQTFWHRIKFYAQLCGID 237

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT++      D + E++ +
Sbjct: 238 KEALSPHVLRHAFATHLLNYGADLRVVQMLLGHSNLSTTQIYTHI----AQDRLKELHQE 293

Query: 317 THP 319
            HP
Sbjct: 294 HHP 296


>gi|47570332|ref|ZP_00240977.1| site-specific recombinase, phage integrase family [Bacillus cereus
           G9241]
 gi|47552997|gb|EAL11403.1| site-specific recombinase, phage integrase family [Bacillus cereus
           G9241]
          Length = 302

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 159/311 (51%), Gaps = 31/311 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R +++  
Sbjct: 11  QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDITYADVRLYLTTL 65

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137
             +K+  +S+ R +S ++S  ++L  R+   + N   + +L KK  S+P+ L  ++    
Sbjct: 66  HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               L   S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG K 
Sbjct: 122 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248
           R +P     + A++ Y +      N   QL          +F   +G PL     +  + 
Sbjct: 180 RYIPFGSYAQDALITYIE------NGRKQLAEKTEEHSHMVFLNAKGTPLTSRGVRYVLN 233

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L +   L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+     +
Sbjct: 234 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 289

Query: 309 WMMEIYDQTHP 319
            +  +Y + HP
Sbjct: 290 RLRSVYMKHHP 300


>gi|213969060|ref|ZP_03397199.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato T1]
 gi|301384045|ref|ZP_07232463.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           tomato Max13]
 gi|302058751|ref|ZP_07250292.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           tomato K40]
 gi|302131712|ref|ZP_07257702.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213926058|gb|EEB59614.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato T1]
          Length = 298

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 150/309 (48%), Gaps = 32/309 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKR 78
            +L  L +E+GLS  T  SY  D     +F  +  E  + +    R++    I   ++ R
Sbjct: 11  QFLDALWLEKGLSDNTRDSYRSD---LALFNGWLQERNVDLPGAGREV----ILDHLAWR 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  RS  R LSG + F +YL + K+ +    L +   +    LP++L+E       
Sbjct: 64  VENAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADV---- 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL     ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K R
Sbjct: 120 -EALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKER 178

Query: 199 IVPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +VP+           +R A  E     P D+       LF   RG  +    F   I+  
Sbjct: 179 LVPMGEEAIVWVERYMRGARDELLGGKPSDV-------LFPSTRGDQMTRQTFWHRIKHQ 231

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+  S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        +
Sbjct: 232 ATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----L 287

Query: 311 MEIYDQTHP 319
            E++ + HP
Sbjct: 288 QEMHAKHHP 296


>gi|28868685|ref|NP_791304.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|28851924|gb|AAO54999.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|331016306|gb|EGH96362.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 298

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 150/308 (48%), Gaps = 32/308 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKRR 79
           +L  L +E+GLS  T  SY  D     +F  +  E  + +    R++    I   ++ R 
Sbjct: 12  FLDALWLEKGLSDNTRDSYRSD---LALFNGWLQERNVDLPGAGREV----ILDHLAWRV 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                 RS  R LSG + F +YL + K+ +    L +   +    LP++L+E        
Sbjct: 65  ENAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADV----- 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL     ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K R+
Sbjct: 120 EALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179

Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           VP+           +R A  E     P D+       LF   RG  +    F   I+   
Sbjct: 180 VPMGEEAIVWVERYMRGARDELLGGKPSDV-------LFPSTRGDQMTRQTFWHRIKHQA 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+  S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + 
Sbjct: 233 TVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288

Query: 312 EIYDQTHP 319
           E++ + HP
Sbjct: 289 EMHAKHHP 296


>gi|206978533|ref|ZP_03239383.1| tyrosine recombinase XerC [Bacillus cereus H3081.97]
 gi|217961251|ref|YP_002339819.1| site-specific tyrosine recombinase XerC [Bacillus cereus AH187]
 gi|229140473|ref|ZP_04269028.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST26]
 gi|206743256|gb|EDZ54713.1| tyrosine recombinase XerC [Bacillus cereus H3081.97]
 gi|217067516|gb|ACJ81766.1| tyrosine recombinase XerC [Bacillus cereus AH187]
 gi|228643034|gb|EEK99310.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST26]
          Length = 299

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 159/311 (51%), Gaps = 31/311 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R +++  
Sbjct: 8   QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDITYADVRLYLTTL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137
             +K+  +S+ R +S ++S  ++L  R+   + N   + +L KK  S+P+ L  ++    
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               L   S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG K 
Sbjct: 119 --EELFEVSDTKTPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248
           R +P     + A++ Y +      N   QL          +F   +G PL     +  + 
Sbjct: 177 RYIPFGSYAQDALITYIE------NGRKQLAKKTEEQSHMVFLNAKGTPLTSRGVRYVLN 230

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L +   L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+     +
Sbjct: 231 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 286

Query: 309 WMMEIYDQTHP 319
            +  +Y + HP
Sbjct: 287 RLRSVYMKHHP 297


>gi|118479053|ref|YP_896204.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis
           str. Al Hakam]
 gi|228986974|ref|ZP_04147100.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|118418278|gb|ABK86697.1| tyrosine recombinase XerC subunit [Bacillus thuringiensis str. Al
           Hakam]
 gi|228772752|gb|EEM21192.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 302

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 159/311 (51%), Gaps = 31/311 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R +++  
Sbjct: 11  QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDITYADVRLYLTTL 65

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137
             +K+  +S+ R +S ++S  ++L  R+   + N   + +L KK  S+P+ L  ++    
Sbjct: 66  HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               L   S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG K 
Sbjct: 122 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248
           R +P     + A++ Y +      N   QL          +F   +G PL     +  + 
Sbjct: 180 RYIPFGSYAQDALITYIE------NGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLN 233

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L +   L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+     +
Sbjct: 234 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 289

Query: 309 WMMEIYDQTHP 319
            +  +Y + HP
Sbjct: 290 RLRSVYMKHHP 300


>gi|89098652|ref|ZP_01171534.1| tyrosine recombinase [Bacillus sp. NRRL B-14911]
 gi|89086614|gb|EAR65733.1| tyrosine recombinase [Bacillus sp. NRRL B-14911]
          Length = 260

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/263 (31%), Positives = 137/263 (52%), Gaps = 11/263 (4%)

Query: 59  TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
            IQ++  + Y ++R ++++   QK+  +S  R +S ++SF K+L + K+  ++    +  
Sbjct: 5   AIQSVNDVEYFDVRLYLTRLYEQKLSRKSAARKISSLRSFYKFLAREKLANDNPFSAVSL 64

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            K    LP    E++      N L  +      +  RN A+L LLY  G+R+SE   ++ 
Sbjct: 65  PKLEKRLPEFFYEEEL-----NCLFESCETDSPLGKRNKALLELLYATGMRVSECSQISL 119

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGK 236
           ++I    ST+ + GKG K R +P     + A+  Y      +L         LF   RG 
Sbjct: 120 KDIDMALSTVLVHGKGQKDRYIPFGSFAQDALELYITEGRKELLTGRESHDRLFVNFRGG 179

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           PL P   +  + ++ +   L  +   H LRHSFATHLLSNG D+R++Q +LGH  LS+TQ
Sbjct: 180 PLTPRGIREILNKMIQKSSLEGTIHPHMLRHSFATHLLSNGADMRTVQELLGHAFLSSTQ 239

Query: 297 IYTNVNSKNGGDWMMEIYDQTHP 319
           +YT+V +    +++ + Y  THP
Sbjct: 240 VYTHVTN----EYLRKTYLNTHP 258


>gi|288559967|ref|YP_003423453.1| tyrosine recombinase XerC [Methanobrevibacter ruminantium M1]
 gi|288542677|gb|ADC46561.1| tyrosine recombinase XerC [Methanobrevibacter ruminantium M1]
          Length = 326

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/205 (39%), Positives = 112/205 (54%), Gaps = 11/205 (5%)

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLL--HTSHETKWIDARNSAILYLLYGCGLRISE 172
           +++N K++ SLP++L EK+  +L+D V +    S   K    R+  IL  LY  GLRISE
Sbjct: 129 DVQNPKRTKSLPKSLTEKEVKSLIDAVQITDEDSELKKKAKMRDKVILEFLYSTGLRISE 188

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
            + L  ++I  D+ T+R++GKG+K RIV    + R  I  Y      +        LF  
Sbjct: 189 LVKLQKKDIDFDERTIRVRGKGEKDRIVLFDENTRDLIDNY-----IETQNQKSEYLFIN 243

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
             G+ L P   Q  I++     G+    T H LRHSFATHLL NG D+R IQ +LGH  L
Sbjct: 244 KNGRKLTPRYVQMMIKEYAEKAGIKKKVTPHVLRHSFATHLLKNGVDIRVIQQLLGHSSL 303

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQT 317
           STTQIYTNV+     D +  +YD  
Sbjct: 304 STTQIYTNVDM----DTIKSVYDHA 324


>gi|138895887|ref|YP_001126340.1| site-specific tyrosine recombinase XerD [Geobacillus
           thermodenitrificans NG80-2]
 gi|196248777|ref|ZP_03147477.1| tyrosine recombinase XerD [Geobacillus sp. G11MC16]
 gi|134267400|gb|ABO67595.1| DNA integration/recombination/invertion protein [Geobacillus
           thermodenitrificans NG80-2]
 gi|196211653|gb|EDY06412.1| tyrosine recombinase XerD [Geobacillus sp. G11MC16]
          Length = 298

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 155/306 (50%), Gaps = 16/306 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E +++L  L +ER L+  T+ SYE D ++++     Y  E   ++   ++    I  F+ 
Sbjct: 4   ELKDFLHYLTVERNLAHNTIISYERDLKKYV----HYLREVEQLEAWGEVERLHILHFLK 59

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               Q    R++ R L+ I+SF ++L + K+  +   +++   +   +LP+ L+ ++   
Sbjct: 60  FLSEQGQSARTIARHLASIRSFHQFLLREKMAAQDPTVHIETPQFERTLPKVLSVEEV-- 117

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
                LL           R+ A+L +LY  G+R+SE + L   ++      +R  GKG K
Sbjct: 118 ---EALLAAPQTNTPFGLRDKAMLEVLYATGMRVSELVQLNLGDVHLTMGFVRCYGKGRK 174

Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRY 253
            RIVP+     +A+  Y +   P  +N   +    LF    G+ L    F + +++L + 
Sbjct: 175 ERIVPIGRMALEALARYLEYGRPQLVNPRKRATEALFLNHYGQRLTRQGFWKILKRLSKE 234

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V      D    +
Sbjct: 235 AGIEKELTPHTLRHSFATHLLENGADLRAVQELLGHADISTTQMYTHVTKTRLKD----V 290

Query: 314 YDQTHP 319
           Y Q HP
Sbjct: 291 YKQYHP 296


>gi|65321158|ref|ZP_00394117.1| COG4974: Site-specific recombinase XerD [Bacillus anthracis str.
           A2012]
          Length = 302

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 159/311 (51%), Gaps = 31/311 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R +++  
Sbjct: 11  QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDITYADVRLYLTTL 65

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137
             +K+  +S+ R +S ++S  ++L  R+   + N   + +L KK  S+P+ L  ++    
Sbjct: 66  HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               L   S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG K 
Sbjct: 122 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248
           R +P     + A++ Y +      N   QL          +F   +G PL     +  + 
Sbjct: 180 RYIPFGSYAQDALITYIE------NGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLN 233

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L +   L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+     +
Sbjct: 234 ELIKKASLTMRISPHILRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 289

Query: 309 WMMEIYDQTHP 319
            +  +Y + HP
Sbjct: 290 RLRSVYMKHHP 300


>gi|119961787|ref|YP_948168.1| tyrosine recombinase XerC [Arthrobacter aurescens TC1]
 gi|119948646|gb|ABM07557.1| putative tyrosine recombinase XerC [Arthrobacter aurescens TC1]
          Length = 311

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/296 (31%), Positives = 150/296 (50%), Gaps = 11/296 (3%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           LE E   S  T+++Y  D    L    F  +E +  Q +RQL    +R ++  +    + 
Sbjct: 24  LEGECARSAHTVRAYLSDVESLL---GFAVQEGV--QELRQLELGSLRRWLGAQSEAGMA 78

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +L R  +  +SF  +  + ++      + ++  K+  SLP  L ++Q   +VD+ L  
Sbjct: 79  RATLARRAATARSFTGWALREELIETDPAVRLQAPKRDKSLPGVLQQQQVSRMVDD-LNT 137

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            + +   +  RN A++ LLY  G+R+ E   L   ++  D+ T+R+ GKG+K R VP   
Sbjct: 138 AAADGGPMALRNRAMVELLYATGVRVGELAGLDIDDLDPDRRTVRVLGKGNKERTVPFGV 197

Query: 205 SVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
               A+ ++     P  +       LF G+RG  ++P   +  + +L + LG   +T  H
Sbjct: 198 PAAVAVDDWLRRGRPAVVGATSGPALFLGVRGNRVDPRQIRAVVSELLQALGDTSATGPH 257

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            LRHS ATHLL  G DLR++Q ILGH  L+TTQIYT+V+     D + + Y Q HP
Sbjct: 258 ALRHSAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSV----DRLRKSYQQAHP 309


>gi|222097276|ref|YP_002531333.1| site-specific tyrosine recombinase xerc [Bacillus cereus Q1]
 gi|229197941|ref|ZP_04324656.1| Tyrosine recombinase xerC [Bacillus cereus m1293]
 gi|221241334|gb|ACM14044.1| site-specific integrase/recombinase [Bacillus cereus Q1]
 gi|228585520|gb|EEK43623.1| Tyrosine recombinase xerC [Bacillus cereus m1293]
 gi|324327728|gb|ADY22988.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 299

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 159/311 (51%), Gaps = 31/311 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R +++  
Sbjct: 8   QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDITYADVRLYLTTL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137
             +K+  +S+ R +S ++S  ++L  R+   + N   + +L KK  S+P+ L  ++    
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               L   S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG K 
Sbjct: 119 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248
           R +P     + A++ Y +      N   QL          +F   +G PL     +  + 
Sbjct: 177 RYIPFGSYAQDALITYIE------NGRKQLAKKTEEQSHMVFLNAKGTPLTSRGVRYVLN 230

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L +   L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+     +
Sbjct: 231 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 286

Query: 309 WMMEIYDQTHP 319
            +  +Y + HP
Sbjct: 287 RLRSVYMKHHP 297


>gi|304398153|ref|ZP_07380028.1| tyrosine recombinase XerC [Pantoea sp. aB]
 gi|304354439|gb|EFM18811.1| tyrosine recombinase XerC [Pantoea sp. aB]
          Length = 301

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/311 (30%), Positives = 158/311 (50%), Gaps = 19/311 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S  LL+    +L+ L++ER LS LT  SY    RQ    +A   E K++  +  QL   
Sbjct: 1   MSSTLLEAVDGFLRYLKVERQLSPLTQSSY---ARQLAALVAIADEMKLS--SWAQLEPA 55

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++R+  ++ R   +   SL   LS ++SFL +   + + + +    +   +K+  LP+ +
Sbjct: 56  QVRSMAARSRRAGLSASSLALRLSALRSFLDWQVSQGLLSANPAKGVMTPRKARHLPKNI 115

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  +      N LL    +   +  R+ A+L ++YG GLR+SE +++  +++  D   + 
Sbjct: 116 DVDEV-----NQLLEIDLDDP-LAVRDRAMLEVMYGGGLRLSELVNMDCRHVDLDSGEVW 169

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIR 248
           + GKG K R VP+    R A+       P       Q   LF   RG  ++P   Q+   
Sbjct: 170 VVGKGSKERRVPI---GRTAVTWIQHWLPLRETFGAQDDALFLSTRGNRISPRNVQKRFA 226

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GL      H LRHSFATHLL + GDLR++Q +LGH  LSTTQIYT+++ ++   
Sbjct: 227 EWGIRQGLASHIHPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQH--- 283

Query: 309 WMMEIYDQTHP 319
            +  +YD  HP
Sbjct: 284 -LASVYDAAHP 293


>gi|260593346|ref|ZP_05858804.1| integrase/recombinase XerD [Prevotella veroralis F0319]
 gi|260534622|gb|EEX17239.1| integrase/recombinase XerD [Prevotella veroralis F0319]
          Length = 314

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 91/280 (32%), Positives = 146/280 (52%), Gaps = 12/280 (4%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L++E+G S  TL +Y  D  + L +LA    E I +  ++     ++  F +      IG
Sbjct: 18  LKLEKGHSANTLDAYMRDLDKLLRYLA---AENIDVLKVK---LEDLEFFAASISDLGIG 71

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            RSL R LSG++ F ++L             + + K+ N LP  L+  +   L   + L 
Sbjct: 72  PRSLARILSGVRQFYRFLVLDGYLEVDPTELLESPKQPNHLPEVLSTAEVDLLEQAIDL- 130

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
               +KW   RN AI+ +L+ CGLR+SE   LT  N+  ++  LR+ GKG K R+VP+ P
Sbjct: 131 ----SKWEGHRNRAIIEVLFSCGLRVSELTHLTLSNLYIEEQYLRVLGKGSKERLVPISP 186

Query: 205 SVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              + +  ++D     D+    +  +F   RG  L   +    I++     G+  + + H
Sbjct: 187 RALEELSYWFDDRNKMDIKPGEEDYVFLNRRGHHLTRTMILIMIKRYAVEAGIKKTISPH 246

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           TLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++
Sbjct: 247 TLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDT 286


>gi|49478402|ref|YP_037892.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|196042353|ref|ZP_03109624.1| tyrosine recombinase XerC [Bacillus cereus NVH0597-99]
 gi|218904959|ref|YP_002452793.1| tyrosine recombinase XerC [Bacillus cereus AH820]
 gi|225865812|ref|YP_002751190.1| tyrosine recombinase XerC [Bacillus cereus 03BB102]
 gi|228916468|ref|ZP_04080034.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228928879|ref|ZP_04091911.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935145|ref|ZP_04097972.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228947550|ref|ZP_04109840.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229123345|ref|ZP_04252549.1| Tyrosine recombinase xerC [Bacillus cereus 95/8201]
 gi|229157407|ref|ZP_04285485.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 4342]
 gi|254721983|ref|ZP_05183772.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           A1055]
 gi|301055321|ref|YP_003793532.1| tyrosine recombinase [Bacillus anthracis CI]
 gi|49329958|gb|AAT60604.1| site-specific integrase/recombinase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|196026809|gb|EDX65445.1| tyrosine recombinase XerC [Bacillus cereus NVH0597-99]
 gi|218540108|gb|ACK92506.1| tyrosine recombinase XerC [Bacillus cereus AH820]
 gi|225791021|gb|ACO31238.1| tyrosine recombinase XerC [Bacillus cereus 03BB102]
 gi|228626134|gb|EEK82883.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 4342]
 gi|228660121|gb|EEL15757.1| Tyrosine recombinase xerC [Bacillus cereus 95/8201]
 gi|228812070|gb|EEM58401.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228824510|gb|EEM70315.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830686|gb|EEM76291.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228843047|gb|EEM88129.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|300377490|gb|ADK06394.1| tyrosine recombinase [Bacillus cereus biovar anthracis str. CI]
          Length = 299

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 159/311 (51%), Gaps = 31/311 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R +++  
Sbjct: 8   QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDITYADVRLYLTTL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137
             +K+  +S+ R +S ++S  ++L  R+   + N   + +L KK  S+P+ L  ++    
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               L   S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG K 
Sbjct: 119 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248
           R +P     + A++ Y +      N   QL          +F   +G PL     +  + 
Sbjct: 177 RYIPFGSYAQDALITYIE------NGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLN 230

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L +   L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+     +
Sbjct: 231 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 286

Query: 309 WMMEIYDQTHP 319
            +  +Y + HP
Sbjct: 287 RLRSVYMKHHP 297


>gi|256822057|ref|YP_003146020.1| tyrosine recombinase XerD [Kangiella koreensis DSM 16069]
 gi|256795596|gb|ACV26252.1| tyrosine recombinase XerD [Kangiella koreensis DSM 16069]
          Length = 295

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 97/294 (32%), Positives = 157/294 (53%), Gaps = 16/294 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +E+GLS  TL SY  D + F  +L     +K     +R   + +I+ ++++R T++   R
Sbjct: 15  MEQGLSDATLSSYRSDLKLFNQWL-----QKQGKDLLRSSPF-DIQQYLAERYTKQYSSR 68

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R LS  + F +YL +           + + K    +P++L+E +    VD++L    
Sbjct: 69  STARFLSSARKFYRYLIQSNQIKVDPTQQIDSPKIQPPVPKSLSEDE----VDSLLSQPD 124

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
            ET  +  R+ A+L LLY  GLRI+E +S+    I   Q  +R+ GKG+K R+VP+    
Sbjct: 125 LETA-LGLRDKAMLELLYSSGLRITELISVEVNQIGFQQGVMRVIGKGNKERLVPIGEEA 183

Query: 207 RKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            +AI  Y      +L N  +   LF   RG+ +    F   I+   +  G+    + HTL
Sbjct: 184 LQAISLYIRHGRAELANEKVCDWLFLSTRGQRMTRQTFWHRIKLYAKTAGIRKHLSPHTL 243

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           RH+FATHLL++G DLR++Q +LGH  LSTTQIYT+V  +     + +++ + HP
Sbjct: 244 RHAFATHLLNHGADLRTLQMLLGHSDLSTTQIYTHVAKER----LKQLHSEHHP 293


>gi|225351382|ref|ZP_03742405.1| hypothetical protein BIFPSEUDO_02976 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157726|gb|EEG71009.1| hypothetical protein BIFPSEUDO_02976 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 308

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 152/287 (52%), Gaps = 16/287 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L+  RGLS+ T ++Y  D  + L+ L     E++  + + +++  ++R ++++  ++   
Sbjct: 14  LKANRGLSENTRKAYRGDVEECLLAL-----ERLRCRDLNEVTIEDLRMWMAES-SKNHA 67

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--- 141
             S+ R    ++ F  +  +  +TT      +   K  ++LP  L+E QA  L++ V   
Sbjct: 68  KSSMARKTVAVRGFFAWTHEHGVTTTDPACALMTPKIPDTLPDVLSESQAEQLMERVDED 127

Query: 142 -----LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
                    + + + I+ R++A+L LLY  G+R++E + L   +++    T+++ GKG+K
Sbjct: 128 GETSQPKERTMKQQAIELRDAAMLELLYATGMRVAELVGLDVPDVVFSNRTVKVTGKGNK 187

Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R++P     +KAI  + D   P  +       LF G +GK ++  + +R + +  R  G
Sbjct: 188 QRVMPFGAPAQKAIRRWLDDGRPLLVGEQSAAALFLGRQGKRIDQRMVRRVVHECARDAG 247

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +P   + H LRHS ATH+L  G DLR +Q +LGH  L TTQ YT+V+
Sbjct: 248 VP-DISPHALRHSAATHMLDGGADLREVQELLGHSSLKTTQRYTHVS 293


>gi|302038654|ref|YP_003798976.1| tyrosine recombinase XerD [Candidatus Nitrospira defluvii]
 gi|300606718|emb|CBK43051.1| Tyrosine recombinase XerD [Candidatus Nitrospira defluvii]
          Length = 299

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 145/286 (50%), Gaps = 11/286 (3%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +  ++ I RGLS+ TL +Y+ D   F  +L         +  +R++S   +  F+   
Sbjct: 6   ERYWDHVRIARGLSRNTLLAYQRDVASFQHYL-----RDQQVSDVREMSPPLLAGFLDHL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +   S  R+L+ ++S  ++LK+  +   +  +++R+  ++  LP+ L+ ++     
Sbjct: 61  HQSGLASPSRARALAAVRSLFRFLKQEGMIAANPTVSLRSASRARRLPKTLSPEEV---- 116

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL         D R+ A++ +LY  G+R+SE +SL       D   + I GKG+K R
Sbjct: 117 -TRLLELPPRPLPEDHRDRAMVEVLYAAGVRVSELISLRVDQCNLDVGYIGITGKGEKQR 175

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+     +A+  Y     P  L       +F   RG PL    F + +R      G+ 
Sbjct: 176 VVPIGRPAIEAVQAYLLAARPALLKQRSSRFVFVSRRGTPLTRQAFWKLLRARAHRAGIA 235

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              + H LRHSFATHLL  G DLRS+Q++LGH  ++TTQIYT+V+S
Sbjct: 236 RIPSPHMLRHSFATHLLQRGADLRSVQAMLGHADIATTQIYTHVDS 281


>gi|171056822|ref|YP_001789171.1| integrase family protein [Leptothrix cholodnii SP-6]
 gi|170774267|gb|ACB32406.1| integrase family protein [Leptothrix cholodnii SP-6]
          Length = 312

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 151/311 (48%), Gaps = 21/311 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +LQ+L+++R L+  TL  Y       L       E+++ +  +R      +R + +    
Sbjct: 15  FLQHLQVQRRLAPRTLTMYGA---ALLRLEHAAAEQQLALTQVRP---PHVRRWAAMLHG 68

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q +G RS+   L+  +   ++L +    + + +  +R  K    LP+AL   +A+ L D+
Sbjct: 69  QGLGPRSIAIHLAAWRGLYRWLGREGQVSANPVDGLRPPKAGRPLPKALAVDEAVVLADH 128

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-------DQSTLRIQGK 193
              H       +D R+ A+  LLYGCGLR +E + L      D       +    ++ GK
Sbjct: 129 ---HDPATDPLLDLRDHAMTELLYGCGLRAAELIGLDCIAGPDAAGWIDLEGGDAQVLGK 185

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G   RIVP+ P    A+  +  +    +    +L LF   RG  L     +R + Q  + 
Sbjct: 186 GSNRRIVPVGPPAVAAVQAWLAVR-HQMARAGELALFVSRRGTRLTDSQLRRRLAQRAQS 244

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL      H LRHS+A+HLL + GDLR++Q +LGH ++STTQ+YT ++ ++    +  I
Sbjct: 245 AGLTSHVHPHMLRHSYASHLLQSSGDLRAVQELLGHAQISTTQVYTRLDYQH----LARI 300

Query: 314 YDQTHPSITQK 324
           YD  HP   +K
Sbjct: 301 YDAAHPRARRK 311


>gi|30263835|ref|NP_846212.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           Ames]
 gi|47529259|ref|YP_020608.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49186681|ref|YP_029933.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           Sterne]
 gi|165873312|ref|ZP_02217917.1| tyrosine recombinase XerC [Bacillus anthracis str. A0488]
 gi|167642028|ref|ZP_02400258.1| tyrosine recombinase XerC [Bacillus anthracis str. A0193]
 gi|170689658|ref|ZP_02880838.1| tyrosine recombinase XerC [Bacillus anthracis str. A0465]
 gi|170709363|ref|ZP_02899777.1| tyrosine recombinase XerC [Bacillus anthracis str. A0389]
 gi|177655993|ref|ZP_02937120.1| tyrosine recombinase XerC [Bacillus anthracis str. A0174]
 gi|229603261|ref|YP_002868069.1| tyrosine recombinase XerC [Bacillus anthracis str. A0248]
 gi|254683462|ref|ZP_05147322.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           CNEVA-9066]
 gi|254735869|ref|ZP_05193575.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           Western North America USA6153]
 gi|254739605|ref|ZP_05197299.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           Kruger B]
 gi|254751200|ref|ZP_05203239.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           Vollum]
 gi|254759317|ref|ZP_05211342.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           Australia 94]
 gi|30258479|gb|AAP27698.1| tyrosine recombinase XerC [Bacillus anthracis str. Ames]
 gi|47504407|gb|AAT33083.1| tyrosine recombinase XerC [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180608|gb|AAT55984.1| site-specific recombinase, phage integrase family [Bacillus
           anthracis str. Sterne]
 gi|164710950|gb|EDR16522.1| tyrosine recombinase XerC [Bacillus anthracis str. A0488]
 gi|167510008|gb|EDR85424.1| tyrosine recombinase XerC [Bacillus anthracis str. A0193]
 gi|170125737|gb|EDS94650.1| tyrosine recombinase XerC [Bacillus anthracis str. A0389]
 gi|170666382|gb|EDT17165.1| tyrosine recombinase XerC [Bacillus anthracis str. A0465]
 gi|172079892|gb|EDT65000.1| tyrosine recombinase XerC [Bacillus anthracis str. A0174]
 gi|229267669|gb|ACQ49306.1| tyrosine recombinase XerC [Bacillus anthracis str. A0248]
          Length = 299

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 159/311 (51%), Gaps = 31/311 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R +++  
Sbjct: 8   QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDITYADVRLYLTTL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137
             +K+  +S+ R +S ++S  ++L  R+   + N   + +L KK  S+P+ L  ++    
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               L   S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG K 
Sbjct: 119 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248
           R +P     + A++ Y +      N   QL          +F   +G PL     +  + 
Sbjct: 177 RYIPFGSYAQDALITYIE------NGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLN 230

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L +   L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+     +
Sbjct: 231 ELIKKASLTMRISPHILRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 286

Query: 309 WMMEIYDQTHP 319
            +  +Y + HP
Sbjct: 287 RLRSVYMKHHP 297


>gi|58584819|ref|YP_198392.1| integrase [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|58419135|gb|AAW71150.1| Integrase [Wolbachia endosymbiont strain TRS of Brugia malayi]
          Length = 392

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/218 (40%), Positives = 119/218 (54%), Gaps = 11/218 (5%)

Query: 113 ILNMRNLKKSNSLPR---ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
           I+N R L   N +P       E    T V  + L    E  WI  R  AI+ LLYG GLR
Sbjct: 180 IINKRTLSIKNWIPVLSIGTTEGNTKTSVKEIKLLDLGEP-WIIKREIAIIVLLYGTGLR 238

Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
           ISEAL+L   +I ++  +L + GKGDK R V +LP V+  I EY   CP+    N    L
Sbjct: 239 ISEALNLKVSDISNE--SLIVTGKGDKQRQVFILPVVKMFIQEYVKACPYLSVNNEAQHL 296

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F G+RGK L        ++++RR L LP   + H  RHSFATHLL    D+R IQ +LGH
Sbjct: 297 FVGVRGKKLGRTYVANRLQKIRRMLNLPEIVSPHAFRHSFATHLLQENVDIRFIQQLLGH 356

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
             L TTQ+YT++N ++    +  +Y     S+ +KDKK
Sbjct: 357 SSLETTQVYTHLNYQD----VFNMYKNFQQSL-EKDKK 389



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 68/124 (54%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +NW + L   R  S  TL+SY  D + F+ FL+ +  E++ + ++ +LS  E+R++ S R
Sbjct: 8   ENWHEWLRCYRSYSSNTLESYMRDLKDFISFLSAHIGEEVNVGSLEKLSVPELRSWFSFR 67

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + I  RS  R+LS I++F KY+K         + ++    +  +LP+AL+     TLV
Sbjct: 68  YARGINARSNTRALSVIRNFFKYIKNNYEVNNEAVFSLSRPIQRRTLPKALSISDIKTLV 127

Query: 139 DNVL 142
           D  L
Sbjct: 128 DFFL 131


>gi|332637865|ref|ZP_08416728.1| site-specific recombinase XerD [Weissella cibaria KACC 11862]
          Length = 303

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 98/304 (32%), Positives = 150/304 (49%), Gaps = 20/304 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L +ERGLS  T  SY  D   F  +L     +K     + Q+    I AF+ +  
Sbjct: 14  DYLHYLTVERGLSANTRTSYRQDLTHFFTYLI----DKEKSLPLTQVDRFTIMAFLGEME 69

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL--NEKQALTL 137
           TQ     S+   +S ++ F ++      TT   +  +   KK+  LP  L  +E +AL  
Sbjct: 70  TQGKSRNSVIHMVSTLRKFFQFATDSGWTTTDPMTQVDPPKKAQHLPAVLTLSEVEALLA 129

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           V +           +  RN  +L ++Y  GLR+SE ++L   N+  D   ++  GKGDK 
Sbjct: 130 VPDT-------NTTLGLRNRTMLEVMYATGLRVSELVNLRLDNLHLDLGLIQTIGKGDKE 182

Query: 198 RIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           RI+P+   V    L+ Y  D  PF      +  +F    G  L      + I+Q     G
Sbjct: 183 RIIPI-GDVATHWLQRYLADGRPFLGRQQDEQVIFLNDHGHQLTRQGVWKLIKQWVIAAG 241

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + HTLRHSFATH+L NG DLR +Q +LGH  +STTQIYT++++K     + E+Y 
Sbjct: 242 ITKDVSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISNKR----LTEVYQ 297

Query: 316 QTHP 319
           ++HP
Sbjct: 298 KSHP 301


>gi|332882567|ref|ZP_08450179.1| putative tyrosine recombinase XerC [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332679367|gb|EGJ52352.1| putative tyrosine recombinase XerC [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 332

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 96/302 (31%), Positives = 155/302 (51%), Gaps = 21/302 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L IE   S  T+++Y+ D R F  F+    E++     + +    +I+ +I     Q + 
Sbjct: 32  LSIEMKYSIHTVEAYKHDLRAFERFIKSECEKEEEDCPLERADQEDIKKWIISLSNQSMS 91

Query: 85  DRSLKRSLSGIKSFLKYLKKRK-ITT---ESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            RS+ R LS +K++  +LKK K I T   E  I  ++  KK N LP +  E      ++ 
Sbjct: 92  FRSINRKLSALKTYYTFLKKTKQIETSPFERGIFLLKTEKK-NKLPFSEAE------IEK 144

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           VL + S ++ + + R+ AI+  LY  G+R SE   L  Q++  +Q  ++I GKGDK R +
Sbjct: 145 VLSYFSSKSSFDEVRDRAIIETLYATGMRRSELTGLKLQDLDLEQKQIKISGKGDKERYI 204

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P++P +   + EY  L     N   +  LF    GK + P +  R I      +      
Sbjct: 205 PVIPELEATLKEYLRLREEIANKKSEDFLFLVKNGKKIYPTLVYRIINSYFSAVTSKKDV 264

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI---YDQT 317
           + H LRHSFA+HLL NG DL +++ +LGH  L++TQ+YTN +       ++E+   Y + 
Sbjct: 265 SPHILRHSFASHLLDNGADLNTVKELLGHSSLASTQVYTNTS-------LVELKRQYKKA 317

Query: 318 HP 319
           HP
Sbjct: 318 HP 319


>gi|229104393|ref|ZP_04235062.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-28]
 gi|228679091|gb|EEL33299.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-28]
          Length = 299

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 159/311 (51%), Gaps = 31/311 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R +++  
Sbjct: 8   QLFVGYLQIERNYSKYTIASYQNDLEHFVRFM-----EREGISSFLDVTYADVRLYLTTL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137
             +K+  +S+ R +S ++S  ++L  R+   + N   + +L KK  S+P+ L  ++    
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               L   S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG K 
Sbjct: 119 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248
           R +P     + A++ Y +      N   QL          +F   +G PL     +  + 
Sbjct: 177 RYIPFGSYAQDALITYME------NGRKQLANKTEEQSHMVFLNAKGTPLTSRGVRYVLN 230

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L +   L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+     +
Sbjct: 231 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 286

Query: 309 WMMEIYDQTHP 319
            +  +Y + HP
Sbjct: 287 RLRSVYMKHHP 297


>gi|95929136|ref|ZP_01311880.1| Tyrosine recombinase XerD [Desulfuromonas acetoxidans DSM 684]
 gi|95134634|gb|EAT16289.1| Tyrosine recombinase XerD [Desulfuromonas acetoxidans DSM 684]
          Length = 298

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/297 (31%), Positives = 149/297 (50%), Gaps = 16/297 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L IERGLS  TL+SY  D ++++ FL     E+  I  +  +   ++  F ++ + Q +G
Sbjct: 14  LSIERGLSANTLESYARDLQRYIGFL-----EERHINDVIAIRQNDVLDFFTELKEQGMG 68

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            RS  R L+ ++ F  Y         + +  +   K   +LP  L+         + LL 
Sbjct: 69  VRSRARLLAALRGFHHYAVDEYQLANNPVARLTTPKMLQTLPDTLSPADV-----DALLD 123

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            + + + +  R+ A+L LLY  G+R+SE + L   ++  +   LR+ GKG K RI+P+  
Sbjct: 124 INDDGQALTRRDIAMLELLYATGMRVSELVGLKLDDLHLNSGYLRVFGKGSKQRIIPIGE 183

Query: 205 SVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
                + +Y        D   N+   +F    GK L    F + I++     G+  + T 
Sbjct: 184 IAIDTLRDYLARVRPELDRQRNLSPCVFLNRSGKGLTRQGFWKMIKRRALEAGITKNVTP 243

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT+V  ++    +  ++   HP
Sbjct: 244 HTLRHSFATHLLENGADLRVVQMLLGHVDISTTQIYTHVTREH----VRHVHQSFHP 296


>gi|299538357|ref|ZP_07051640.1| tyrosine recombinase xerD [Lysinibacillus fusiformis ZC1]
 gi|298725944|gb|EFI66536.1| tyrosine recombinase xerD [Lysinibacillus fusiformis ZC1]
          Length = 300

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 103/307 (33%), Positives = 159/307 (51%), Gaps = 23/307 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  +++ER LS  TL SY  D   ++ FL    +E   +     +  T I   + + 
Sbjct: 9   EDYIHFIQVERQLSVNTLASYRRDLESYVHFL----KEAEGMSDFSVVERTTILRHLEQL 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYL--KKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           R Q    R++ R +S I+SF ++L  +KR  T  +  L M  +++   LP  L+ ++   
Sbjct: 65  RAQGKTSRTVARHISSIRSFHQFLLREKRAETDPTVHLEMPTIEQK--LPNILSIEEI-- 120

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
                LL   +++K    R+ A+L LLYG G+RISE ++L   +I      +R+ GKG K
Sbjct: 121 ---EALLTAPNKSKPQGIRDLAMLELLYGSGMRISELIALDLADIHLTMGFVRVFGKGGK 177

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRR 252
            RI+PL  S   AI  Y  L      L  + P     F   RGK L      + +++   
Sbjct: 178 ERIIPLGKSALSAINAY--LNGARGQLQGKYPKTDAFFINQRGKRLTRQGCWKLMKEHAL 235

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    T HTLRHSFATHL+ NG DLR++Q +LGH  +STTQIYT+++       + E
Sbjct: 236 KAGIQHELTPHTLRHSFATHLVENGADLRAVQEMLGHADISTTQIYTHISKTR----LSE 291

Query: 313 IYDQTHP 319
           +Y Q HP
Sbjct: 292 VYKQFHP 298


>gi|218289606|ref|ZP_03493826.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius LAA1]
 gi|218240256|gb|EED07439.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius LAA1]
          Length = 294

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 150/304 (49%), Gaps = 16/304 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E + +L +L +ERGLS+ T  SY  D   F  +LA   E++    T+R    T +  ++S
Sbjct: 4   EIRTFLDHLRLERGLSENTATSYARDLADFSQYLA--CEQR----TMRDADRTVVLRYLS 57

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             + + +   ++ R +S ++SF +YL +  I       N+        LPR ++E+    
Sbjct: 58  DLKRRGMKSTTIARRMSALRSFFRYLLREGILQADPTANIEVAAPDEHLPRVVSEEDVER 117

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+  V          +  R+ A+L  LY  G+R+SE L+L+ +++      +R+ GKG K
Sbjct: 118 LIGAV-----RRPDAMGLRDRAMLETLYATGVRVSELLALSLEDVELAAGFIRVFGKGKK 172

Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R+VPL    + A+  Y     P  +    +  +F    G+ +    F   ++   R  G
Sbjct: 173 ERVVPLGEIAQDALGLYLRYGRPLLVRDRGESAVFLNRLGRRMTRQGFWNILKGYARQAG 232

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFATHLL  G DLR +Q +LGH  +STT+ YT+V        + E+Y 
Sbjct: 233 VSAEVTPHTLRHSFATHLLEGGADLRVVQELLGHADISTTERYTHVTPHR----LREVYR 288

Query: 316 QTHP 319
             HP
Sbjct: 289 NAHP 292


>gi|229031461|ref|ZP_04187461.1| Tyrosine recombinase xerC [Bacillus cereus AH1271]
 gi|228729750|gb|EEL80730.1| Tyrosine recombinase xerC [Bacillus cereus AH1271]
          Length = 299

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 159/311 (51%), Gaps = 31/311 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R +++  
Sbjct: 8   QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYLTTL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137
             +K+  +S+ R +S ++S  ++L  R+   + N   + +L KK  S+P+ L  ++    
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               L   S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG K 
Sbjct: 119 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248
           R +P     + A++ Y +      N   QL          +F   +G PL     +  + 
Sbjct: 177 RYIPFGSYAQDALITYIE------NGRKQLAHKTEEHSHMVFLNAKGTPLTSRGVRYVLN 230

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L +   L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+     +
Sbjct: 231 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 286

Query: 309 WMMEIYDQTHP 319
            +  +Y + HP
Sbjct: 287 RLRSVYMKHHP 297


>gi|328948451|ref|YP_004365788.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489]
 gi|328448775|gb|AEB14491.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489]
          Length = 297

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/274 (33%), Positives = 153/274 (55%), Gaps = 18/274 (6%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTE--EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            KLT ++Y    ++FL +L       EK+T+Q++  L YT   AF   R+T    + +L 
Sbjct: 21  GKLTAETYLICVQEFLDYLEKNETPLEKVTVQSL--LYYT---AF---RKTSGRKEITLA 72

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           + LS ++ F  +L ++KI  E+    +   K S +LP+ L  +Q  +L+ ++ +      
Sbjct: 73  KDLSALRIFGSFLVRKKIWIENFAHEIGKPKVSRALPKVLEVEQVDSLLASIDV-----K 127

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           K +  R+ A+  ++Y CGLRISEA SL   N+  D++ + ++GKG K R+VP        
Sbjct: 128 KPLGIRDRALYEVIYSCGLRISEACSLLIANVHFDENLILVRGKGSKERLVPFGEDAAFW 187

Query: 210 ILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           + ++ +++ P  +   I   +F   +G P++     +  + + +  G+      HTLRHS
Sbjct: 188 LKKWIFEIRPGFVGSRIIPEVFVNSKGNPISRKGIWKNFKAMGKKTGI--EAKVHTLRHS 245

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           FATHLLS G DLRS+Q +LGH  LSTTQIYT+++
Sbjct: 246 FATHLLSGGADLRSVQELLGHSDLSTTQIYTHID 279


>gi|258511717|ref|YP_003185151.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478443|gb|ACV58762.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 294

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 149/302 (49%), Gaps = 16/302 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L +L +ERGLS+ T  SY  D   F  +LA   E++    T+R    T +  ++S  
Sbjct: 6   RTFLDHLRLERGLSENTATSYARDLADFSQYLA--REQR----TMRDADRTAVLRYLSDL 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + + +   ++ R +S ++SF +YL +  +       N+        LPR ++E+    L+
Sbjct: 60  KRRGMKSTTIARRMSALRSFFRYLLREGVLQADPTANIEVAAPDEHLPRVVSEEDVERLI 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             V          +  R+ A+L  LY  G+R+SE L+L+ +++      +R+ GKG K R
Sbjct: 120 GAV-----RRPDAMGLRDRAMLETLYATGVRVSELLALSLEDVELAAGFIRVFGKGKKER 174

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL    + A+  Y     P  +    +  +F    G+ +    F   ++   R  G+ 
Sbjct: 175 VVPLGEIAQDALGLYLRYGRPLLVRDRGESAVFLNRLGRRMTRQGFWNILKGYARQAGVS 234

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T HTLRHSFATHLL  G DLR +Q +LGH  +STT+ YT+V        + E+Y   
Sbjct: 235 AEVTPHTLRHSFATHLLEGGADLRVVQELLGHADISTTERYTHVTPHR----LREVYRNA 290

Query: 318 HP 319
           HP
Sbjct: 291 HP 292


>gi|34497827|ref|NP_902042.1| integrase/recombinase XerC [Chromobacterium violaceum ATCC 12472]
 gi|81655548|sp|Q7NVH1|XERC_CHRVO RecName: Full=Tyrosine recombinase xerC
 gi|34103683|gb|AAQ60044.1| integrase/recombinase XerC [Chromobacterium violaceum ATCC 12472]
          Length = 299

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 145/299 (48%), Gaps = 20/299 (6%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G S  TL +Y  D            E  +  ++ R  +  E+R  ++K   Q +  RSL 
Sbjct: 16  GRSPHTLAAYRADIELL--------ENMMQAKSARDATAAELRKALAKLHAQGLSSRSLA 67

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R LS  + F  +L++     ++    +   K+   LP+AL       L+D +   +    
Sbjct: 68  RRLSSWRQFYHWLQRNGEREDNPAAGLYAPKRDKLLPKALPVDGTAALLDRIEGESE--- 124

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
             +DAR+ AI  L+Y CGLR+SE ++L   ++    S LRI+GKG K R+VP+       
Sbjct: 125 --LDARDRAIFELVYSCGLRLSETVALNLDDVDFSDSLLRIRGKGGKERLVPIGAEAMLR 182

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +  +       ++   +  LF G  G  L     ++ +R      G       H LRHSF
Sbjct: 183 LRTWLGERSAGMD---EPALFLGRHGHRLGGRQVEKRLRDWAIKTGAGQHVHPHMLRHSF 239

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           A+H+L + GDLR++Q +LGH  LS+TQIYT ++ ++    + ++YD  HP   ++ K +
Sbjct: 240 ASHMLQSSGDLRAVQELLGHANLSSTQIYTALDFQH----LAKVYDGAHPRARKRGKPD 294


>gi|308235900|ref|ZP_07666637.1| tyrosine recombinase XerD [Gardnerella vaginalis ATCC 14018]
 gi|311115004|ref|YP_003986225.1| integrase/recombinase [Gardnerella vaginalis ATCC 14019]
 gi|310946498|gb|ADP39202.1| integrase/recombinase [Gardnerella vaginalis ATCC 14019]
          Length = 335

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 160/327 (48%), Gaps = 34/327 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTE-IRAFIS 76
           Q +L ++ +ERGLS  T++SYE D  ++  +L      KI  +  I QL   E +RA  S
Sbjct: 14  QQFLNHISVERGLSPKTVESYESDLTKYTNWL--REARKINDVNEITQLDIEEYVRAMSS 71

Query: 77  KR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +   +Q +G R++ R ++ I  + K++             ++  K++  LP  L+  +  
Sbjct: 72  QAMSSQNLGPRTIARRIASIHEWNKFMLSNAQIASDPSAEVKAPKQAEHLPDVLSISEVE 131

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            ++D      S  T  +  R+ A++  LY  G R+SEA+ L  ++I   +S +R+ GKG 
Sbjct: 132 RVIDAAGGFGS--TDAVSLRDRALVEFLYATGARVSEAVGLKFEDIDLTESVVRLSGKGQ 189

Query: 196 KIRIVPLLPSVRKAILEY-----------YDLCPFDLNLNIQLPL------------FRG 232
           K R+VP+     +A+ +Y               P      ++ PL            F  
Sbjct: 190 KQRLVPIGKCAVRALRDYLANARPILASRAQKSPATAKSRLKSPLNSSSKSANTHVIFLN 249

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
            RGK L+       I +  +   +      HTLRHSFATHL+S G D+R++Q +LGH  +
Sbjct: 250 KRGKSLSRQSAWEAISRAGKMAKIGKELHPHTLRHSFATHLISGGADVRTVQELLGHASV 309

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHP 319
           +TTQIYT+++     D +ME Y  +HP
Sbjct: 310 TTTQIYTHISP----DALMEAYVMSHP 332


>gi|194014676|ref|ZP_03053293.1| tyrosine recombinase XerC [Bacillus pumilus ATCC 7061]
 gi|194013702|gb|EDW23267.1| tyrosine recombinase XerC [Bacillus pumilus ATCC 7061]
          Length = 305

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 151/303 (49%), Gaps = 18/303 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +++ L+IE+  S LT+  Y     +F+ F+         I    ++SY + R ++++   
Sbjct: 11  FIEYLQIEKNYSALTISGYTEAIEEFVRFMNVQG-----IDGFEEVSYQDTRIYLTEAYE 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  R++ + +S ++SF K+L + ++  E+  L +   K+   +P  L E++       
Sbjct: 66  KGLTRRTISKKVSALRSFYKFLLREQLVKENPFLLVSLPKQDKRIPSFLYEEEL-----K 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            L   S  +  +  RN AIL LLY  G+R+SE  SL   ++     T+ + GKG K R V
Sbjct: 121 ELFTVSDVSTPLGQRNQAILELLYATGMRVSELCSLKESDLDLSMDTVLVHGKGSKQRYV 180

Query: 201 PLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           P      +A++ Y +     L    N      +F   RG PL     +  + +L +    
Sbjct: 181 PFGSYAHEALITYLEDGRLKLKAKGNDRADAYVFLNQRGAPLTDRGVRFILTELMKKASG 240

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            L    H LRH+FATHLL+ G DLRS+Q +LGH  LS+TQ+YT+V+     D + + Y  
Sbjct: 241 TLHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVSK----DSLRKTYMS 296

Query: 317 THP 319
            HP
Sbjct: 297 HHP 299


>gi|73662564|ref|YP_301345.1| site-specific recombinase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|82582339|sp|Q49XU5|XERD_STAS1 RecName: Full=Tyrosine recombinase xerD
 gi|72495079|dbj|BAE18400.1| site-specific recombinase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 295

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 156/302 (51%), Gaps = 15/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ +++E+GLS  T+ +Y  D +++  FL     E   I  I  +    I+  +   
Sbjct: 6   EEYLKFIQLEKGLSSNTIGAYRRDLKKYNTFL-----ELQKISHIDFIDRASIQQCLGYL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  +SL R +S I+SF ++  + K   +   + +   K    LP  L   + L   
Sbjct: 61  HDNGASAKSLARFISTIRSFHQFALREKYAAKDPTVLIETPKYDRKLPDVLEINEVL--- 117

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL T +  K    R+  +L LLY  G+R+SE + +  +++      +++ GKG+K R
Sbjct: 118 --ALLETPNLAKINGYRDRTMLELLYATGMRVSELIQIELEDVNLIMGFVKVFGKGNKER 175

Query: 199 IVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           IVPL  +V + +  Y + + P  L   +   LF  + GKPL+     + I+Q      + 
Sbjct: 176 IVPLGDTVIEYLKTYIETIRPQLLKKTVTNTLFLNMHGKPLSRQAIWKMIKQNAIKANIT 235

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            S T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y++ 
Sbjct: 236 KSLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYNEF 291

Query: 318 HP 319
           HP
Sbjct: 292 HP 293


>gi|296122593|ref|YP_003630371.1| tyrosine recombinase XerC [Planctomyces limnophilus DSM 3776]
 gi|296014933|gb|ADG68172.1| tyrosine recombinase XerC [Planctomyces limnophilus DSM 3776]
          Length = 302

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 153/308 (49%), Gaps = 16/308 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L+IER  S+LTL+SY  D   F     + TE    I    QL  +E+R +++    
Sbjct: 8   FLRYLQIERNASELTLKSYAED---FGSLHDYLTERVGHITEPGQLGISELRGYVAYLNE 64

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                 ++ R L+ ++SF ++ ++ ++   +    +R  +    LP+ L  +Q + L++ 
Sbjct: 65  CGYAKTTIARRLASLRSFFRFCQREQLVEGNPAKALRTPRVGRKLPKFLTTEQIVKLLE- 123

Query: 141 VLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                +     +D  R+ AIL   Y  GLR++E + L   +   D   L + GKG K RI
Sbjct: 124 -----APPANEVDGLRDRAILETFYSAGLRVAELVGLNLDDWDQDAQILHVFGKGKKERI 178

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
            PL     KA+ ++  +   +     QL   LF    G  L      R + +  +  GL 
Sbjct: 179 APLGKHATKALEKWVAVRKPEEAAPPQLKNALFLNRFGTRLTTRSVGRMLEKYIQLTGLD 238

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + HTLRH+FATHLL  G DLRS+Q +LGH  L+TTQIYT+V+++     + + Y Q 
Sbjct: 239 QLISPHTLRHTFATHLLDGGADLRSVQEMLGHKSLTTTQIYTHVSTQR----LKDTYQQA 294

Query: 318 HPSITQKD 325
           HP    +D
Sbjct: 295 HPHAKVQD 302


>gi|152979627|ref|YP_001345256.1| site-specific tyrosine recombinase XerC [Actinobacillus
           succinogenes 130Z]
 gi|171704362|sp|A6VQS4|XERC_ACTSZ RecName: Full=Tyrosine recombinase xerC
 gi|150841350|gb|ABR75321.1| tyrosine recombinase XerC [Actinobacillus succinogenes 130Z]
          Length = 295

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 101/311 (32%), Positives = 161/311 (51%), Gaps = 23/311 (7%)

Query: 19  QNWLQN----LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           QN LQ     L IER LS  TL +Y    RQ        T+    I++ +Q++ + +R  
Sbjct: 2   QNALQKYYDFLRIERRLSPYTLTNYR---RQLSAVTELLTQN--GIRSWQQVTPSVVRFI 56

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++ R   + ++SL   LS ++ FL YL  ++    +    +   K+   LP+ ++++Q 
Sbjct: 57  LAESRKAGLHEKSLALRLSALRQFLAYLVVQEELKVNPATGISAPKQGKYLPKNIDQEQI 116

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+DN     S+E   ID R+ A+L L+Y  GLR+SE   L   ++      +R+ GKG
Sbjct: 117 GKLLDN----RSNEP--IDIRDRAMLELMYSSGLRLSELHGLDLNHVNLQSREVRVLGKG 170

Query: 195 DKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            K RI+P+      A+L++  +   F+   N    LF   +G  L P   Q+ +      
Sbjct: 171 SKERILPVGHQALDAVLDWLQVRLRFNPKDN---ALFVSSQGGRLTPRAIQKRMEIWGVK 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL      H LRHSFATH+L    DLR++Q +LGH  L+TTQIYT+++ K+    + ++
Sbjct: 228 QGLSTHLNPHKLRHSFATHMLEASADLRAVQELLGHSNLATTQIYTHLDFKH----LTDV 283

Query: 314 YDQTHPSITQK 324
           YDQ HP   +K
Sbjct: 284 YDQAHPRAKRK 294


>gi|332994945|gb|AEF05000.1| tyrosine recombinase [Alteromonas sp. SN2]
          Length = 307

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 93/321 (28%), Positives = 156/321 (48%), Gaps = 44/321 (13%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L +L++ERGLS LT+ +Y        I L  Y    +T         ++++  ++  
Sbjct: 16  EKFLLHLQVERGLSPLTISNYRRQLTSIAITLGLYEWSGMTP--------SDVKRVMAAA 67

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +      RS+   LS +++F +YL   +    + +  ++  K+   LP+ L+  +   L+
Sbjct: 68  KMDGHKPRSIALRLSALRTFCQYLIDNEQLFSNPVEGIQAPKQGKPLPKQLSVDEMQQLL 127

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDK 196
            N    +    + I  R+ A+  LLYGCGLR+SE   LT  N+ D     T+++ GKG K
Sbjct: 128 ANEQAASGDTDEGIICRDVAMFELLYGCGLRLSE---LTGLNLSDYPKDGTIKVTGKGSK 184

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF--QRYIR------ 248
            RI+PL    +KA+  +  + P                  P  P +F  +R  R      
Sbjct: 185 QRILPLGRQAQKALHAWLKVRP--------------AYASPYEPAIFVSKRKTRISNRQV 230

Query: 249 -----QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
                Q+     L    + H LRHSFATH+L + GDLR++Q +LGH  LSTTQ+YT+++ 
Sbjct: 231 ANRLNQMAELQSLSQKVSPHKLRHSFATHVLESSGDLRAVQELLGHANLSTTQVYTHLDF 290

Query: 304 KNGGDWMMEIYDQTHPSITQK 324
           ++    + ++YD  HP   +K
Sbjct: 291 QH----LAKVYDAAHPRAHKK 307


>gi|319778943|ref|YP_004129856.1| Tyrosine recombinase XerC [Taylorella equigenitalis MCE9]
 gi|317108967|gb|ADU91713.1| Tyrosine recombinase XerC [Taylorella equigenitalis MCE9]
          Length = 315

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 100/328 (30%), Positives = 169/328 (51%), Gaps = 43/328 (13%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + WLQ+L  E+  S  T+ +Y+ D +  +     + E+ ++     +L+  ++R  I+  
Sbjct: 6   EQWLQSLVTEKNSSPHTVAAYKRDLQHLI---DIFPEKDLS-----KLNNMDVRQAIATL 57

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            ++    RSL R LS  ++F K+   +     +  L ++  K +  LP+AL   +A  L+
Sbjct: 58  HSRDFNPRSLTRILSSWRNFYKWYSLKYELDINPTLGIKAPKVARPLPKALTADEAKLLL 117

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL----------TPQNIMD-DQST 187
           D V L T   +  + AR+ A+  LLY  GLR+SE ++L            +  +D +   
Sbjct: 118 D-VGLQTDDNSA-VHARDQAMFELLYSSGLRLSELVNLDIEYHKSQDHVSKGWLDINNHE 175

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----------PLFRGIRGK 236
           L + GKG+K RIVPL     +AIL +       LN  I+L            LF G +GK
Sbjct: 176 LTVIGKGNKPRIVPLGEKAEEAILHW-------LNRRIELEGPKTSASDKCALFLGAQGK 228

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            ++  V Q  +++L     +P +   H LRHSFA+H+L +  DLR++Q +LGH ++STTQ
Sbjct: 229 RISTRVVQLQLKKLALKTNIPSNIHPHVLRHSFASHILQSSQDLRAVQDLLGHSKISTTQ 288

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           +YT ++ ++    + E YD+ HP   +K
Sbjct: 289 LYTRLDFQH----LSEAYDKAHPRAKKK 312


>gi|213964199|ref|ZP_03392435.1| tyrosine recombinase XerC [Capnocytophaga sputigena Capno]
 gi|213953166|gb|EEB64512.1| tyrosine recombinase XerC [Capnocytophaga sputigena Capno]
          Length = 308

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/308 (29%), Positives = 157/308 (50%), Gaps = 15/308 (4%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L IE   S  T+++Y+ D R F  F+    E+K     + +    +I+ +I +   Q++ 
Sbjct: 10  LSIEMKYSIHTVEAYKHDLRAFEKFIKSEYEDKEEECPLERADQEDIKKWIIQLSQQEMS 69

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITT----ESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            RS+ R LS +K++  +LKK K       E  I  ++  +K   LP +  E      ++ 
Sbjct: 70  FRSINRKLSALKTYYTFLKKTKQIEVSPFEKGIFLLKT-EKRQKLPFSEAE------IEK 122

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           VL + S ++ + + R+ A++ +LY  G+R SE  +L   ++   Q  L++ GKGDK R +
Sbjct: 123 VLSYFSSKSSFDEVRDRAVIEMLYATGIRRSELANLRLSDVDLAQKQLKVSGKGDKERYI 182

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P++P + + + EY  L     N   Q  LF    GK L   +  R I      +      
Sbjct: 183 PIIPELEETLKEYLKLREEVANEKSQNYLFLVKNGKKLYSTLVYRIINSYFSAVTPKKDV 242

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H LRHSFA+HLL NG DL +++ +LGH  L++TQ+YTN +       + + Y + HP 
Sbjct: 243 SPHVLRHSFASHLLDNGADLNTVKELLGHSSLASTQVYTNTSLAE----LKKQYKKAHPR 298

Query: 321 ITQKDKKN 328
             +K++ +
Sbjct: 299 ADRKEEDD 306


>gi|42782923|ref|NP_980170.1| site-specific tyrosine recombinase XerC [Bacillus cereus ATCC
           10987]
 gi|42738850|gb|AAS42778.1| site-specific recombinase, phage integrase family [Bacillus cereus
           ATCC 10987]
          Length = 299

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 159/311 (51%), Gaps = 31/311 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R +++  
Sbjct: 8   QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDITYADVRLYLTTL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137
             +K+  +S+ R +S ++S  ++L  R+   + N   + +L KK  S+P+ L  ++    
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               L   S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG K 
Sbjct: 119 --EELFKVSDTGTPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248
           R +P     + A++ Y +      N   QL          +F   +G PL     +  + 
Sbjct: 177 RYIPFGSYAQDALITYIE------NGRKQLAKKTEEQSHMVFLNAKGTPLTSRGVRYVLN 230

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L +   L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+     +
Sbjct: 231 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 286

Query: 309 WMMEIYDQTHP 319
            +  +Y + HP
Sbjct: 287 RLRSVYMKHHP 297


>gi|71736133|ref|YP_273616.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556686|gb|AAZ35897.1| tyrosine recombinase XerD [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 298

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 150/308 (48%), Gaps = 32/308 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKRR 79
           +L  L +E+GLS  T  SY  D     +F  +  E    + +  R++    I   ++ R 
Sbjct: 12  FLDALWLEKGLSDNTRDSYRSD---LALFNGWLQERNADLPSAGREV----ILDHLAWRV 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                 RS  R LSG + F +YL + K+ +    L +   +    LP++L+E        
Sbjct: 65  ENAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADV----- 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL     ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K R+
Sbjct: 120 EALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179

Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           VP+           +R A  E     P D+       LF   RG  +    F   I+   
Sbjct: 180 VPMGEEAIVWVERYLRGARDELLGGKPSDV-------LFPSTRGDQMTRQTFWHRIKHQA 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+  S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + 
Sbjct: 233 TVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288

Query: 312 EIYDQTHP 319
           E++ + HP
Sbjct: 289 ELHAKHHP 296


>gi|66044534|ref|YP_234375.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           syringae B728a]
 gi|63255241|gb|AAY36337.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 298

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 149/308 (48%), Gaps = 32/308 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKRR 79
           +L  L +E+GLS  T  +Y  D     +F  +  E  +  I   R++    I   ++ R 
Sbjct: 12  FLDALWLEKGLSDNTRDAYRSD---LALFNGWLQERNVDLISAGREV----ILDHLAWRV 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                 RS  R LSG + F +YL + K+      L +   +    LP++L+E        
Sbjct: 65  DNAYKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADV----- 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL     ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K R+
Sbjct: 120 EALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179

Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           VP+           +R A  E     P D+       LF   RG  +    F   I+   
Sbjct: 180 VPMGEESIVWVERYLRGARDELLGGKPSDV-------LFPSTRGDQMTRQTFWHRIKHQA 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+  S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + 
Sbjct: 233 TVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288

Query: 312 EIYDQTHP 319
           E++ + HP
Sbjct: 289 EMHARHHP 296


>gi|320323174|gb|EFW79263.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329555|gb|EFW85544.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 298

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 148/307 (48%), Gaps = 30/307 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +E+GLS  T  SY  D     +F  +  E  + + +        I   ++ R  
Sbjct: 12  FLDALWLEKGLSDNTRDSYRSD---LALFNGWLQERNVDLPSA---GREVILDHLAWRVE 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                RS  R LSG + F +YL + K+ +    L +   +    LP++L+E         
Sbjct: 66  NAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADV-----E 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL     ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K R+V
Sbjct: 121 ALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLV 180

Query: 201 PLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           P+           +R A  E     P D+       LF   RG  +    F   I+    
Sbjct: 181 PMGEEAIVWVERYLRGARDELLGGKPSDV-------LFPSTRGDQMTRQTFWHRIKHQAT 233

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+  S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT++        + E
Sbjct: 234 VAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHLARAR----LQE 289

Query: 313 IYDQTHP 319
           ++ + HP
Sbjct: 290 LHAKHHP 296


>gi|292491052|ref|YP_003526491.1| tyrosine recombinase XerD [Nitrosococcus halophilus Nc4]
 gi|291579647|gb|ADE14104.1| tyrosine recombinase XerD [Nitrosococcus halophilus Nc4]
          Length = 306

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 95/301 (31%), Positives = 158/301 (52%), Gaps = 18/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +E GL++ TL +Y  D   F  +L  Y + +  ++  R+    ++ A+++ R  
Sbjct: 20  FLDALWLEEGLAENTLAAYRRDLEGFSRWL--YPQGRTLVEAQRE----DLLAYLAHRLE 73

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +    RS  RS+S ++ F +YL + K+        +   +    LP +L+E++   L+  
Sbjct: 74  RSHKARSAARSVSSLRRFYRYLVREKVRDSDPSDRVEAPRLGRPLPESLSEEEVEALLAA 133

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             ++ +     +  R+ A+L  LY  GLR+SE + LT   +   Q  +R+ GKG+K R+V
Sbjct: 134 PEVNCN-----LGLRDRAMLETLYATGLRVSELVHLTLPQLNLRQGVVRLSGKGNKERLV 188

Query: 201 PLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           PL   V  + LE Y  +  P  +   +   LF   RG  +    F   I++  R  G+  
Sbjct: 189 PL-GEVALSWLECYSREARPGLIKAQMSEILFLTRRGGAMTRQAFWYLIKRYARQAGVRK 247

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + +++ Q H
Sbjct: 248 ALSPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVARAR----LQQLHQQHH 303

Query: 319 P 319
           P
Sbjct: 304 P 304


>gi|196232913|ref|ZP_03131763.1| integrase family protein [Chthoniobacter flavus Ellin428]
 gi|196223112|gb|EDY17632.1| integrase family protein [Chthoniobacter flavus Ellin428]
          Length = 298

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 151/302 (50%), Gaps = 19/302 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++   LE+ER  S  TL +Y     +F         +   +   ++L+    R ++ +  
Sbjct: 12  DFFTFLEVERNASPRTLINYRHALAEF--------RQVPNLPAWKELTADHFRRYLFECS 63

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + I   +++   + +++F K+L +R    E+ +  ++  K    LP  L  KQ   L+ 
Sbjct: 64  KRGIARPTIRLHFAALRTFYKFLTERHGLKENPLKEVQLPKLEKKLPLVLTTKQIDELLS 123

Query: 140 NVLL--HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
             L    ++    W+ AR++AIL L Y  GLR++E ++L   N+     ++R+ GKG K 
Sbjct: 124 APLRIEKSAKAPVWMPARDAAILELFYSSGLRLAELVALDVANVDIYSESVRVLGKGRKE 183

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VP+      AI +Y      + N++   PLF     + L        IR+   +  +P
Sbjct: 184 RVVPVGAPALTAIQKYRQ----EANVHAG-PLFLSKVRRRLTAANVWLVIRRYLPHTSIP 238

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           L  + H LRHSFATHLL  G DLRS+QS+LGH  LSTTQIYT+V  +     +   YD+ 
Sbjct: 239 LKVSPHKLRHSFATHLLDAGADLRSVQSLLGHASLSTTQIYTHVTIER----LKTAYDEA 294

Query: 318 HP 319
           HP
Sbjct: 295 HP 296


>gi|126640131|ref|YP_001083115.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC
           17978]
 gi|126386015|gb|ABO10513.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC
           17978]
 gi|322506426|gb|ADX01880.1| Site-specific tyrosine recombinase [Acinetobacter baumannii 1656-2]
 gi|323517823|gb|ADX92204.1| site-specific tyrosine recombinase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|323519204|gb|ADX93585.1| site-specific tyrosine recombinase [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 310

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 141/267 (52%), Gaps = 17/267 (6%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            + ++  ++IR FI+ R    +G  +LK+++S I++F  YL K K+   +   +++  K 
Sbjct: 42  ALEEIEASDIRTFIAYRAQNGVGVSTLKKNISAIRTFFHYLTKEKLINFNPAEDIKIKKS 101

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSH------ETKWIDARNSAILYLLYGCGLRISEALS 175
           S  LP+       +T+++ VL    +       +  I  R+ A++ + Y CGLR+ E  S
Sbjct: 102 SKVLPKF----HEVTVINEVLDSNKNLEFERPSSTVIFKRDLALIEIAYSCGLRLEEIHS 157

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRG 232
           L  +N+   +  +R+ GKG+K RI+PL     +A LE+  L    +N +       +F  
Sbjct: 158 LQIENVEVKRKQVRVTGKGNKTRIIPLGSKAIEAYLEWLPLREEIMNKDTNQKHNYVFVT 217

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
             G  L+     + I+   +  G P+ +  H LRHSFATHL++N   +R IQ +LGH  L
Sbjct: 218 TTGAQLSRVQINKRIKNAFKLAGYPIQSNPHMLRHSFATHLINNSVGIREIQEMLGHSNL 277

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHP 319
           +TTQIYT+++  +    M  +Y  THP
Sbjct: 278 NTTQIYTDLDHTS----MTNVYMDTHP 300


>gi|170017324|ref|YP_001728243.1| site-specific recombinase XerD [Leuconostoc citreum KM20]
 gi|169804181|gb|ACA82799.1| Site-specific recombinase XerD [Leuconostoc citreum KM20]
          Length = 304

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 88/279 (31%), Positives = 139/279 (49%), Gaps = 10/279 (3%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L+ ER  S LTL++Y  D  +F+ FL    E     QT + +   ++R +++    + + 
Sbjct: 16  LQSERQYSALTLKAYLSDIDEFVAFL----ERNGGFQTFKTVQTLDVRVYLNDLYERHLA 71

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S+ R +S ++ F ++L      T++   N+   K  N LP    E +   L +  + +
Sbjct: 72  RTSIARKISSLRMFYQFLIANHFATDNPFENVALRKHQNHLPEFFYETEMQVLFE--IAY 129

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
              +  W   RN+A+L  LY  G R++E  +LT   I   Q  + I GKG+K R VP   
Sbjct: 130 DQKDPLW--QRNAALLECLYATGARVAEIATLTLSQIDFQQRLILIHGKGNKDRYVPFGH 187

Query: 205 SVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
             +KA+ +Y      +L  N      +F   RG+P+        +  L     L      
Sbjct: 188 YAQKAMQQYIAQLRPELVANCPENTVVFVNHRGQPITAAGITYILNTLMNRSTLTGKIHP 247

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H LRH+FATHLL+NG D+R++Q +LGH  LSTTQ+YT+V
Sbjct: 248 HMLRHTFATHLLNNGADMRTVQELLGHVNLSTTQMYTHV 286


>gi|332686606|ref|YP_004456380.1| site-specific tyrosine recombinase [Melissococcus plutonius ATCC
           35311]
 gi|332370615|dbj|BAK21571.1| site-specific tyrosine recombinase [Melissococcus plutonius ATCC
           35311]
          Length = 299

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 100/323 (30%), Positives = 155/323 (47%), Gaps = 30/323 (9%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ME  N PE+           +L+ L +ERG S+ T  +Y+ D   +  FL          
Sbjct: 1   MENTNWPEL-----------FLRYLIVERGYSQKTKLAYQEDLSHYFQFLK--ESGNTDY 47

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            TI  L   ++R ++S          ++ R ++ ++SF ++L K +   E+    +   K
Sbjct: 48  LTIDHL---DVRVYLSFLYENNYSRSTISRKIASLRSFYQFLLKNERIQENPFSYVHMKK 104

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K   LP    EK+   L D+   +T      +D RN A+L +LYG G+R+ E ++LT + 
Sbjct: 105 KQQRLPLFFYEKEMALLFDSTTGNTP-----LDYRNRALLEVLYGTGIRVGECINLTMEA 159

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI----QLPLFRGIRGK 236
           I  D S L + GKG+K R +P       A+ EY+     D+ +N        +F    G 
Sbjct: 160 IDFDTSVLFVHGKGNKDRYIPFGSFANDALKEYFHKGR-DILMNKYQKQHKYVFVNHYGD 218

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L     +  + QL R   L      H LRH+FATHLL+NG D+R++Q +LGH  LSTTQ
Sbjct: 219 QLTSAGIEYILNQLIRKSSLNTEIHPHMLRHTFATHLLNNGADMRTVQELLGHENLSTTQ 278

Query: 297 IYTNVNSKNGGDWMMEIYDQTHP 319
           IY +V  ++    + + Y   HP
Sbjct: 279 IYAHVTKES----LQKNYRTFHP 297


>gi|326202104|ref|ZP_08191974.1| tyrosine recombinase XerD [Clostridium papyrosolvens DSM 2782]
 gi|325987899|gb|EGD48725.1| tyrosine recombinase XerD [Clostridium papyrosolvens DSM 2782]
          Length = 294

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 160/305 (52%), Gaps = 22/305 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + ++  LE ++ LS  TLQSY+ D  Q++ +L     ++I +  I   + T + A++   
Sbjct: 6   EKFINFLERDKRLSLNTLQSYKRDIEQYITYL-----KEINVTNIANTNKTTVIAYLLHL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + +     ++ R+L+ I+SF ++L K K+        + + K    LP+ L+ ++   L+
Sbjct: 61  QKKGRATSTISRNLASIRSFYQFLYKDKVIDNDPTSELESPKVEKKLPQILSTQEVELLL 120

Query: 139 DNVLLHTSHETKWID---ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +        + K +D    R+ A+L LLY  G+R+SE +SL   +I  +   +R   KG 
Sbjct: 121 E--------QPKCLDLKGIRDKAMLELLYATGIRVSELISLNLDDINFELGFIRC-NKGT 171

Query: 196 KIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           + R +P+      A+ EY D    F +  + +  LF  + GK L    F + I+  +   
Sbjct: 172 RERTIPIGSISMAAVHEYLDKSRNFLIQDSQETALFVNVNGKRLTRQGFWKIIKHYKNQA 231

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            +    T HTLRHSFA HLL NG DLRSIQ +LGH  +S+TQIY  + +KN    + ++Y
Sbjct: 232 KINKDITPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQI-AKNK---IKDVY 287

Query: 315 DQTHP 319
            +THP
Sbjct: 288 KKTHP 292


>gi|91216360|ref|ZP_01253327.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755]
 gi|91185498|gb|EAS71874.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755]
          Length = 298

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 163/309 (52%), Gaps = 28/309 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY----TEEKITIQTIRQLSYTEIRAF 74
           Q++   L+IERGL+  T+Q+Y  D  +   +++ Y    T E +  +T++   Y+     
Sbjct: 8   QDFTYYLKIERGLADNTVQNYRLDILKLANYISEYNATLTPELVDEETLQSFIYS----- 62

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ISK     I +RS  R +SG+KSF  YL        + +  + + +    LP  L+  + 
Sbjct: 63  ISK----VINERSQARLISGLKSFFDYLIFEDYRKTNPLELIESPRLGRRLPDTLSTDEI 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             LV+ + L  SH       RN AI+  LYGCGLR+SE + L   ++  ++  +++ GKG
Sbjct: 119 DQLVEAIDL--SH---LQGHRNKAIIETLYGCGLRVSELVELKISDLFFEKGFIKVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQL 250
           +K R+VP+    +K I  Y +   F ++LN Q      LF   RG  L   +    ++QL
Sbjct: 174 NKERLVPINTYTQKFISIYKE--EFRIHLNQQSEFKDILFLNRRGAQLTRAMIFTIVKQL 231

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            + + L  + + HT RHSFATHLL NG +LR IQ +LGH  ++TT+IY +++  +    +
Sbjct: 232 AKKINLQKNISPHTFRHSFATHLLENGANLRVIQQMLGHESITTTEIYMHLDKTH----L 287

Query: 311 MEIYDQTHP 319
             + +  HP
Sbjct: 288 KSVLENYHP 296


>gi|322435168|ref|YP_004217380.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321162895|gb|ADW68600.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 311

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 155/305 (50%), Gaps = 19/305 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +ERGL   + ++Y  D  QF  FL     + + +   +Q    ++  F+ + R   + 
Sbjct: 16  LRVERGLRPNSCEAYGRDLLQFAEFLE--KRDGLLVGATQQ----DVGEFLGQLRGHAVE 69

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            RS+ R LSG+K F K+L   K       LN+ +      LP+++ E + + +++   + 
Sbjct: 70  SRSVARKLSGLKGFYKWLLMDKRVRHDPTLNVASPSVWKILPKSMAESEVVGMLERTGVA 129

Query: 145 T-SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
             + +   I  R+ AIL LLY  GLR+ E  +L  +++  +    +++GKGDK RIVPL 
Sbjct: 130 ARAADADGIALRDHAILELLYAGGLRVGEICALRVEDVRLEDQRAQVRGKGDKERIVPLG 189

Query: 204 PSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
                A+  Y D     L       ++  +F  +RG+ L     ++++ ++ R       
Sbjct: 190 RQACDALAIYLDRGRPGLARGAGAGMRREMFLSVRGRALT----RQWVWEMVRGCSENGD 245

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + H LRHS ATH++ +G DLRS+Q+ LGH  ++TTQ+YT+V   +    + E++   HP
Sbjct: 246 ASPHKLRHSCATHMVEHGADLRSVQTFLGHADIATTQVYTHVALGH----LKEVHRLHHP 301

Query: 320 SITQK 324
              ++
Sbjct: 302 RAKRR 306


>gi|229174497|ref|ZP_04302029.1| Tyrosine recombinase xerC [Bacillus cereus MM3]
 gi|228609057|gb|EEK66347.1| Tyrosine recombinase xerC [Bacillus cereus MM3]
          Length = 299

 Score =  132 bits (332), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 160/311 (51%), Gaps = 31/311 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R +++  
Sbjct: 8   QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYLTTL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137
             +K+  +S+ R +S ++S  ++L  R+   + N   + +L KK  S+P+ L  ++   L
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEELEEL 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            +     T      +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG K 
Sbjct: 122 FEVADTETP-----LGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248
           R +P     + A++ Y +      N   QL          +F   +G PL     +  + 
Sbjct: 177 RYIPFGSYAQDALITYIE------NGRKQLAHKTEEHSHMVFLNAKGTPLTSRGVRYVLN 230

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L +   L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+     +
Sbjct: 231 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 286

Query: 309 WMMEIYDQTHP 319
            +  +Y + HP
Sbjct: 287 RLRSVYMKHHP 297


>gi|57234468|ref|YP_181457.1| tyrosine recombinase XerC [Dehalococcoides ethenogenes 195]
 gi|57224916|gb|AAW39973.1| tyrosine recombinase XerC [Dehalococcoides ethenogenes 195]
          Length = 307

 Score =  132 bits (332), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 155/310 (50%), Gaps = 35/310 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L +E+ +S  TL++Y  D    + F+ +  E+K++  +  ++    +R ++S    
Sbjct: 8   YLEYLTVEKNVSAYTLRNYRTD---LIGFVNYLIEKKVS--SFDKVDRYILRDYMSSLIE 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + I   S+ R LS ++SF +YL +  +  ++  LN  + +    LP  L   +      N
Sbjct: 63  KGIVKGSIARKLSAVRSFYRYLMREGLIQKNPTLNASSPRLDKRLPEFLTTAEV-----N 117

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL     +     R+ A + LLY  GLR+SE + L  +N+      +R+ GKG K RIV
Sbjct: 118 KLLRIPDSSTPQGLRDKAFMELLYASGLRVSELVKLDIENLDLHSHQIRVWGKGSKERIV 177

Query: 201 PL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---LNPG-------VFQRYIRQ 249
            + LP++ ++I  Y         LN+  PL +G R  P   LNP         FQ  + +
Sbjct: 178 LMGLPAI-QSIQTY---------LNLGRPLLKGKRNTPALFLNPNGGRLSARSFQERLDK 227

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           L    G+      H LRH+FATHLL  G DLR +Q +LGH  LSTTQIYT+V        
Sbjct: 228 LAHQAGIEKHVHPHMLRHTFATHLLDGGADLRVVQELLGHSNLSTTQIYTHVTKSQA--- 284

Query: 310 MMEIYDQTHP 319
             ++Y  +HP
Sbjct: 285 -RKVYMSSHP 293


>gi|120609495|ref|YP_969173.1| phage integrase family protein [Acidovorax citrulli AAC00-1]
 gi|120587959|gb|ABM31399.1| phage integrase family protein [Acidovorax citrulli AAC00-1]
          Length = 326

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 154/318 (48%), Gaps = 26/318 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+++ +E+ L++ T+  Y  D    L  LA    +      + QL    IR F+++   
Sbjct: 18  YLEHVRVEKRLAERTVTLYTLD----LAKLAASARDAGV--PLLQLQTAHIRRFVAQMHA 71

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                R +   LSG + F  +  ++ +   + +  +R  +    LP+AL    A+ L + 
Sbjct: 72  GGRSGRGIALILSGWRGFFAWAARQGLVPHNPVQGVRAPRAPKPLPKALGVDDAVRLAE- 130

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR----------- 189
               +S    W++AR++A++ LLYGCGLR+ E   L      D Q   R           
Sbjct: 131 -FEGSSGSDPWLEARDAAMVELLYGCGLRVGELAGLDAVPGPDTQRQGRGWIDLEAAEAH 189

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYD--LCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRY 246
           + GKG K R VP+  +   A+  + +  L PF   +  +   LF G RG  L        
Sbjct: 190 VFGKGSKRRSVPVGSAALAALRAWLEVRLQPFGAASGRVDAALFLGRRGARLTGQSIWSR 249

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +RQ  +  GL      H LRHSFA+HLL + GDLR++Q +LGH  ++TTQ+YT ++ ++ 
Sbjct: 250 LRQRSQLAGLSTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTRLDFQH- 308

Query: 307 GDWMMEIYDQTHPSITQK 324
              + ++YD  HP   +K
Sbjct: 309 ---LAKVYDAAHPRARRK 323


>gi|76789612|ref|YP_328698.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           A/HAR-13]
 gi|237803298|ref|YP_002888492.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237805218|ref|YP_002889372.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|76168142|gb|AAX51150.1| integrase/recombinase [Chlamydia trachomatis A/HAR-13]
 gi|231273518|emb|CAX10435.1| integrase/recombinase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274532|emb|CAX11328.1| integrase/recombinase [Chlamydia trachomatis B/Jali20/OT]
          Length = 300

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 96/299 (32%), Positives = 158/299 (52%), Gaps = 24/299 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L ++ G+S L++Q+Y  D   FL        ++ +I+   +++   +  F+ K    K  
Sbjct: 19  LSVDHGISPLSVQAYCQDVLLFL--------QRASIEATDRINQESVFLFVEKCHKAKES 70

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           + +L R L  +K F  +LK  K+  +   +    + K   LP  L+ ++  +L+D  L  
Sbjct: 71  ETTLARRLIALKVFFHFLKDAKMLDQQPFIEHPKIWKR--LPSILSTEEVNSLLDQPLNI 128

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            + +T  I +R++AILY  Y  G+R+SE   L   +I DD   +R+ GKG K R+VP+  
Sbjct: 129 PNLDTH-IASRDAAILYTFYATGIRVSELCDLCIGDISDD--FIRVTGKGRKTRLVPISI 185

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
             ++AI  Y  L  F   L  + P    +F  IRGK L+     + I    + +      
Sbjct: 186 KAKQAIDAY--LSSFRDELQKKNPSEEHVFLSIRGKKLDRSCVWKRITFYAKLVTTK-RI 242

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           + H+LRH+FATHLL+N  DLR IQ +LGH R+S+T+IYT+V S++    ++E +   HP
Sbjct: 243 SPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASES----LIEKFHTYHP 297


>gi|317493832|ref|ZP_07952249.1| tyrosine recombinase XerD [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918159|gb|EFV39501.1| tyrosine recombinase XerD [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 299

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 154/303 (50%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER L++ TL SY  D R    +LA +  + +  Q       ++++ F+++R
Sbjct: 10  EQFLDALWLERNLAENTLASYRLDLRSLAEWLAHHHSDLLLAQV------SDLQDFLAER 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +Y  + K+ ++     + + K    LP+ L E Q  TL+
Sbjct: 64  VDGGYKATSSARLLSAMRRLFQYFYREKMRSDDPTTLLSSPKLPQRLPKDLTEAQVDTLL 123

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
               +        I+ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K R
Sbjct: 124 QTPCIENP-----IELRDKAMLEVLYATGLRVSELVGLTLADVSLRQGVVRVIGKGNKER 178

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       I  Y +   P+ LN      LF   R + +    F   I+      G+ 
Sbjct: 179 LVPLGEEAVYWIEYYLEYGRPWLLNGQTIDVLFPSNRTQQMTRQTFWHRIKHYAVLAGID 238

Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            S  + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q
Sbjct: 239 SSRLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQQ 294

Query: 317 THP 319
            HP
Sbjct: 295 HHP 297


>gi|86131808|ref|ZP_01050405.1| phage integrase family protein [Dokdonia donghaensis MED134]
 gi|85817630|gb|EAQ38804.1| phage integrase family protein [Dokdonia donghaensis MED134]
          Length = 296

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 154/300 (51%), Gaps = 14/300 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L +E+  SK T+ +YE D   F +FL     E+  ++    ++Y +IRA+I     
Sbjct: 6   FLEYLNLEKNYSKHTVLAYEKDVTSFFVFLENNYGERDPVK----VAYAQIRAWIISLVD 61

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  +S+ R +S +KS+ K+L K      S ++  ++LK S  +    +EK+    V  
Sbjct: 62  AGLSSQSVNRKVSSLKSYYKFLLKTGDILVSPLVKHKSLKVSKRVQIPFSEKE----VAI 117

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           VL        +   R+  I+ LLYG G+R +E + LT  ++   Q  L+++GK DK R +
Sbjct: 118 VLEELRESQDFTSLRDLLIVELLYGTGMRRAELIDLTMGSVDFSQKILKVKGKRDKERFI 177

Query: 201 PLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           PLLP V   +  Y  +      + N + PL   ++G  +   +  R I +          
Sbjct: 178 PLLPGVITTLERYVVERAQVAQSGNSE-PLLVTLKGLKVYSTLVYRIINRYFSEASDKFK 236

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           T+ H LRHSFATHLL+ G DL  ++ +LGH  L++TQ+YT+    N    + ++Y + HP
Sbjct: 237 TSPHILRHSFATHLLNQGADLNVVKELLGHASLASTQVYTH----NSIKALKDVYSKAHP 292


>gi|332139609|ref|YP_004425347.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549631|gb|AEA96349.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 306

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 161/310 (51%), Gaps = 19/310 (6%)

Query: 19  QNWLQ----NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           Q WL     +L++ERGLS  T+++Y+    +    L  Y    +T         ++I+  
Sbjct: 12  QQWLDKFLLHLQVERGLSLHTIKNYKRQLTEVAKLLGLYEWSGLTP--------SDIKRV 63

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++  +      RS+   LS +++F +YL + +    + +  ++  K+   LP+ L+  + 
Sbjct: 64  MADAKMSGHSPRSIALRLSALRTFCQYLIEHQQLFSNPVEGIQAPKQGKPLPKQLSVDEM 123

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+ N    +S E + +  R+ A+  LLYGCGLR+SE   L   + + D  T+++ GKG
Sbjct: 124 QQLL-NASPQSSDEDEGMQLRDVAMFELLYGCGLRLSELTGLNLADCLKD-GTVKVMGKG 181

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K RI+PL    +KA+  +  + P   +   +  +F   R   ++       + ++ +  
Sbjct: 182 SKQRILPLGRHAQKALNAWLKVRPAYAS-PYESAVFVSKRKTRISNRQVANRLDKMAKEH 240

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            L    + H LRHSFATH+L + GDLR++Q +LGH  LSTTQ+YT+++ ++    +  +Y
Sbjct: 241 SLSQKVSPHKLRHSFATHVLESSGDLRAVQELLGHANLSTTQVYTHLDFQH----LANVY 296

Query: 315 DQTHPSITQK 324
           D+ HP   +K
Sbjct: 297 DEAHPRAHKK 306


>gi|229019026|ref|ZP_04175867.1| Tyrosine recombinase xerC [Bacillus cereus AH1273]
 gi|229025272|ref|ZP_04181692.1| Tyrosine recombinase xerC [Bacillus cereus AH1272]
 gi|228736025|gb|EEL86600.1| Tyrosine recombinase xerC [Bacillus cereus AH1272]
 gi|228742266|gb|EEL92425.1| Tyrosine recombinase xerC [Bacillus cereus AH1273]
          Length = 302

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 159/311 (51%), Gaps = 31/311 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R +++  
Sbjct: 11  QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYLTTL 65

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137
             +K+  +S+ R +S ++S  ++L  R+   + N   + +L KK  S+P+ L  ++    
Sbjct: 66  HDEKLARKSVARKVSSLRSLYRFLM-REGYQKDNPFALASLPKKELSIPKFLYAEEL--- 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               L   S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG K 
Sbjct: 122 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQL---------PLFRGIRGKPLNPGVFQRYIR 248
           R +P     + A++ Y +      N   QL          +F   +G PL     +  + 
Sbjct: 180 RYIPFGSYAQDALITYIE------NGRKQLIQKTEEHSHMVFLNAKGTPLTDRGVRYVLN 233

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L +   L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+     +
Sbjct: 234 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 289

Query: 309 WMMEIYDQTHP 319
            +  +Y + HP
Sbjct: 290 RLRSVYMKHHP 300


>gi|319892482|ref|YP_004149357.1| Tyrosine recombinase XerD [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162178|gb|ADV05721.1| Tyrosine recombinase XerD [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323464415|gb|ADX76568.1| tyrosine recombinase XerD [Staphylococcus pseudintermedius ED99]
          Length = 295

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 161/306 (52%), Gaps = 21/306 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE---IRAF 74
           R  +L+ ++IE+GLS  T+ +Y  D   +L +LA   E K+       L++ +   I+ +
Sbjct: 5   RDEYLRFIQIEKGLSNNTIAAYRRDLNHYLNYLA---EHKVA-----NLNFVDRQMIQEW 56

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
                 +    +++ R  S I+SF ++  +   T+    + +   K    LP  L    +
Sbjct: 57  FGFLHDEGRSAKTIARFTSTIRSFHQFALRENYTSHDPTVLIETPKYDRKLPDVL----S 112

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           +  V+ +L+    E+K    R+  +L LLY  G+R+SE +++  ++I      +++ GKG
Sbjct: 113 IAEVEQLLM-APDESKVNGYRDKTMLELLYATGIRVSELINIEVEDINLMMGFVKVFGKG 171

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            K RIVPL  +V   +  Y  ++ P  L   +   LF  + GKPL+     + I+Q    
Sbjct: 172 SKERIVPLGETVIDCLTHYIQNIRPQLLKHTVTHVLFLNLHGKPLSRQGVWKMIKQTGVK 231

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT++ +KN    + +I
Sbjct: 232 AGIMKRLTPHTLRHSFATHLLENGADLRAVQDMLGHSDISTTQLYTHI-TKN---QIRKI 287

Query: 314 YDQTHP 319
           Y   HP
Sbjct: 288 YQDYHP 293


>gi|223041687|ref|ZP_03611883.1| site-specific recombinase XerD [Actinobacillus minor 202]
 gi|223017496|gb|EEF15911.1| site-specific recombinase XerD [Actinobacillus minor 202]
          Length = 301

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 98/303 (32%), Positives = 150/303 (49%), Gaps = 18/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L  E GLS  T+ SY  D    LI    + +E     TI    +  ++ F+  R
Sbjct: 13  EQFLDTLWQEHGLSDNTVSSYRLD----LILFMEWLDESRAFLTI---DHHALQEFLGYR 65

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R LS ++ F ++L       +     +   +K + LP+ LNE+Q + L+
Sbjct: 66  FDQGYKASSSLRMLSCLRKFFRFLYLENYRKDDPTAMLVAPRKPSRLPKTLNEEQVMDLL 125

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D       +    I+ R+ A+L LLY  GLR++E +SLT +N+   Q  +RI GKGDK R
Sbjct: 126 D-----CPNPLDPIELRDKAMLELLYATGLRVTELISLTTENLSLRQGVVRIIGKGDKER 180

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       I E++       LN      +F   RG+ +    F   I+      G+ 
Sbjct: 181 LVPLGEEASYWIQEFFQYGRGILLNNEPSSIVFPSKRGQMMTRQTFWHRIKHYAVLAGID 240

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V        +  ++++
Sbjct: 241 SEKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR----LKSLHEK 296

Query: 317 THP 319
            HP
Sbjct: 297 YHP 299


>gi|325918374|ref|ZP_08180505.1| tyrosine recombinase XerC subunit [Xanthomonas vesicatoria ATCC
           35937]
 gi|325535397|gb|EGD07262.1| tyrosine recombinase XerC subunit [Xanthomonas vesicatoria ATCC
           35937]
          Length = 302

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 154/311 (49%), Gaps = 22/311 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK-----ITIQTIRQLSYTEIRA 73
           + +L  L++ER +S  TL +Y    R     L++  E+K          + QL   ++R 
Sbjct: 5   EAFLAYLQVERQVSAHTLDAYR---RDLAALLSWAAEQKNDAGVAVALDVAQLDSAQLRQ 61

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F++    + +  +SL+R LS  +S+  +L K    T S    +R  K    LP+ L+  +
Sbjct: 62  FVAAEHRRGLSAKSLQRRLSACRSYYAWLLKHGRITASPAAALRAPKAPRKLPQVLDADE 121

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           A+ LV+            +  R+ A+L L Y  GLR+SE  +L  +++      + + GK
Sbjct: 122 AVRLVEVP------TDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLASGLVMVLGK 175

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R+VP+      A+ E+      D     +  +F G  G  ++    Q  I+QL   
Sbjct: 176 GGKQRLVPVGSHAIAALREWQR----DSGGRAETHVFPGRAGGAISQRAVQIRIKQLAVR 231

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+      H LRHSFA+H+L + GDLR +Q +LGH  ++TTQIYT+++ ++    + ++
Sbjct: 232 QGMFKDVHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQH----LAKV 287

Query: 314 YDQTHPSITQK 324
           YD  HP   +K
Sbjct: 288 YDAAHPRARRK 298


>gi|311745586|ref|ZP_07719371.1| tyrosine recombinase XerD [Algoriphagus sp. PR1]
 gi|126578148|gb|EAZ82368.1| tyrosine recombinase XerD [Algoriphagus sp. PR1]
          Length = 301

 Score =  132 bits (332), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 157/301 (52%), Gaps = 23/301 (7%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L++ER LS+ ++++Y  D  +    LA Y+ +    +    L    +R F+++    +I 
Sbjct: 16  LKLERSLSENSIEAYTRDVEK----LAAYSSKNFPDKNPLNLELEHLRKFVNELAQLEIS 71

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           D +  R +SGIK+F ++L      TE     +   K    LP  L+ ++ + L++ + L 
Sbjct: 72  DYTQARIISGIKAFYRFLMYEDKITEDPAQLLEAPKLGRKLPDTLSYQEIVQLLEAIPLG 131

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
                     RN A+L +LY  GLR+SE + L    I +D   LR+ GKG+K R+VP   
Sbjct: 132 EPE-----GHRNRAMLEMLYSSGLRVSELIELKKGQIFEDIGFLRVIGKGNKERLVP--- 183

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            + K  L+Y ++   ++ ++  +       +F   RGK L+  +    I++     G+  
Sbjct: 184 -IGKDALKYLNIYKDEVRVHQSIAKGHEEFVFLNRRGKKLSRVMIFLIIKKTAELAGIEK 242

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + + HT RHSFATHL+  G DLR++Q +LGH  ++TT+IYT+++     D++ ++    H
Sbjct: 243 NISPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLDR----DYLRQVLTDFH 298

Query: 319 P 319
           P
Sbjct: 299 P 299


>gi|325860159|ref|ZP_08173284.1| putative tyrosine recombinase XerD [Prevotella denticola CRIS
           18C-A]
 gi|325482246|gb|EGC85254.1| putative tyrosine recombinase XerD [Prevotella denticola CRIS
           18C-A]
          Length = 315

 Score =  132 bits (332), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 99/309 (32%), Positives = 155/309 (50%), Gaps = 24/309 (7%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L++E+G S  TL +Y  D  + L +LA   +  +T  T+ QL +     F +      IG
Sbjct: 18  LKLEKGCSPNTLDAYLHDVDKLLRYLAG-EQVSVTDVTLEQLEH-----FAASVSDLGIG 71

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            RSL R LSG++ F ++L             + + K+ + LP  L+  +   L   V L 
Sbjct: 72  ARSLARILSGVRQFYRFLVLDGYMEADPTELLESPKQPDHLPEVLSTAEVDLLEQAVDL- 130

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
               TKW   RN AI+ +L+ CGLR+SE   L   ++  ++  +R+ GKG K R+VP+ P
Sbjct: 131 ----TKWEGHRNRAIIEVLFSCGLRVSELTHLKLSDLYREEQFVRVMGKGSKERLVPISP 186

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
                 L+  D    D N+    P     +F   RG  L   +    I++     G+  +
Sbjct: 187 RA----LDELDCWFADRNVMKIKPGEEDYVFLNRRGHHLTRTMILIMIKRYAVEAGIRKT 242

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++      ++E     HP
Sbjct: 243 ISPHTLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDTSTLRQEILE----HHP 298

Query: 320 SITQKDKKN 328
              + DK++
Sbjct: 299 RNIRYDKEH 307


>gi|168703879|ref|ZP_02736156.1| integrase/recombinase [Gemmata obscuriglobus UQM 2246]
          Length = 301

 Score =  132 bits (332), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 149/303 (49%), Gaps = 15/303 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L +L +E+  S  T++SY  D  Q L F+   T++      +   +   +R+F+S   
Sbjct: 9   DFLTHLGLEKNSSDKTVKSYREDLTQALGFVRDRTKKGHV--AVGDWTTRTVRSFVSWLH 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q     ++ R L+ ++SF KYL +  +   +  L +R  K+   LP        LTL D
Sbjct: 67  EQGYAKSTIARRLAAVRSFSKYLCRAGVLDVNPALALRGPKQDKKLP------HFLTLAD 120

Query: 140 -NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL     T W   R+ A+L  LY  G+R+SE + L    +  +   + ++GKG K R
Sbjct: 121 VQKLLTAPPATDWAGRRDRAVLETLYASGIRVSELVGLDLLAVDLNDGVITVRGKGKKER 180

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +  L P   KAI  +Y+     L    Q    +F   +G  L      R +    +  GL
Sbjct: 181 LALLGPDAVKAITLWYEDRSALLARTGQETEAVFLNNKGGRLTTRSVGRLLSHHLKVAGL 240

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
              T+ HTLRHSFATH+L  G D+R +Q +LGH  L+TTQ+YT+V ++     + + Y +
Sbjct: 241 DPRTSPHTLRHSFATHMLDAGADIRGVQELLGHKSLATTQVYTHVTTQR----LQQSYQK 296

Query: 317 THP 319
            HP
Sbjct: 297 AHP 299


>gi|223043159|ref|ZP_03613206.1| tyrosine recombinase XerD [Staphylococcus capitis SK14]
 gi|314933674|ref|ZP_07841039.1| tyrosine recombinase XerD [Staphylococcus caprae C87]
 gi|222443370|gb|EEE49468.1| tyrosine recombinase XerD [Staphylococcus capitis SK14]
 gi|313653824|gb|EFS17581.1| tyrosine recombinase XerD [Staphylococcus caprae C87]
          Length = 295

 Score =  132 bits (331), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 97/311 (31%), Positives = 161/311 (51%), Gaps = 33/311 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  ++IE+GLS  T+ +Y  D +++      Y EE       R++S+ +   F+ ++
Sbjct: 6   EEYLNFIQIEKGLSSNTIGAYRRDLKKY----EEYLEE-------RKISHID---FVDRQ 51

Query: 79  RTQKI---------GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
             Q+            +SL R +S I+SF ++  + +   +   + +   K    LP  L
Sbjct: 52  VIQECLGHLIDLGQSSKSLARFISTIRSFHQFALRERYAAKDPTVLIETPKYEKKLPDVL 111

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
             ++ L L     L T   +K    R+  +L LLY  G+R+SE + L  +++      +R
Sbjct: 112 EVQEVLDL-----LETPDLSKNNGYRDRTMLELLYATGMRVSEIIQLEVEDVNLMMGFVR 166

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           + GKG+K RIVPL  +V + +  Y +   P  L   +   LF  + GKPL+     + I+
Sbjct: 167 VFGKGNKERIVPLGDAVIEYLTTYIETVRPQLLKQTVTHVLFLNMHGKPLSRQGIWKMIK 226

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           Q      +  + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+      
Sbjct: 227 QNGIKANINKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ--- 283

Query: 309 WMMEIYDQTHP 319
            + ++Y+Q HP
Sbjct: 284 -IRKMYNQFHP 293


>gi|269140272|ref|YP_003296973.1| site-specific tyrosine recombinase [Edwardsiella tarda EIB202]
 gi|267985933|gb|ACY85762.1| site-specific tyrosine recombinase [Edwardsiella tarda EIB202]
 gi|304560099|gb|ADM42763.1| Site-specific recombinase XerD [Edwardsiella tarda FL6-60]
          Length = 299

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 160/303 (52%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +E+ L++ TL SY  D R    +LA++    +T+ T    ++ +++ F ++R
Sbjct: 10  EQFLDALWLEKNLAENTLASYRQDLRTLAEWLAYH---DLTLLTA---AHGDLQDFFAQR 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K+ ++     + + K    LP+ L+E Q    V
Sbjct: 64  MDGGYKASSSARLLSALRRCYQYLYREKLRSDDPSALLASPKLPQRLPKDLSEAQ----V 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D +L   + +T  ++ R+ A+L LLY  GLR+SE + L  ++I   Q  +R+ GKG+K R
Sbjct: 120 DALLQAPAIDTP-LELRDKAMLELLYATGLRVSELVGLAQEDISLRQGVVRVIGKGNKER 178

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       I  Y +   P+ +N      LF   R + +    F   I+      G+ 
Sbjct: 179 LVPLGEEAIYWIEYYLEYGRPWLVNGQTVAALFPSNRARQMTRQTFWHRIKHYAVLAGID 238

Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q
Sbjct: 239 AERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQ 294

Query: 317 THP 319
            HP
Sbjct: 295 HHP 297


>gi|320104524|ref|YP_004180115.1| integrase family protein [Isosphaera pallida ATCC 43644]
 gi|319751806|gb|ADV63566.1| integrase family protein [Isosphaera pallida ATCC 43644]
          Length = 442

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 152/303 (50%), Gaps = 17/303 (5%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLA-----FYTEEKITIQTIRQLSYTEIRAFIS 76
           + +LE  R +S+ TL++Y+ D   F  +LA       + ++  I   R      +R + S
Sbjct: 150 VTSLERNREVSEHTLRAYQEDLGLFSRYLAESQPGCASSDREPIDP-RLADARRLRGYSS 208

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               Q     ++ R L+ +++F ++L+K           MRN K +  LPR L   Q   
Sbjct: 209 WLSRQGYAPGTIARRLASLRTFYRHLRKHGHLEGDPTAAMRNPKPARRLPRPLRLDQIER 268

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L++ V    S     +  R+ AIL LLYG GLR+ E ++L  +++  +++ +R++GKG +
Sbjct: 269 LLEAVPTDQS-----LGVRDRAILELLYGGGLRVGELVALDLEDLDLERNVVRVRGKGRR 323

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+ P+     + +  +  L     +   +  LF    G+ L      R      R LGL
Sbjct: 324 ERLTPIGKQAAEWVRRW--LTHRRPDHGGEHALFLNRYGRRLTARSVDRLFETHARGLGL 381

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               T H+LRHSFATHLL  G DLRS+Q +LGH RL+TTQIYT V  +     ++E Y +
Sbjct: 382 DADATPHSLRHSFATHLLDRGADLRSVQELLGHRRLTTTQIYTQVTRER----LLETYRK 437

Query: 317 THP 319
            HP
Sbjct: 438 AHP 440


>gi|256587797|gb|ACU98929.1| integrase [Propionibacterium jensenii]
          Length = 305

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 82/261 (31%), Positives = 132/261 (50%), Gaps = 6/261 (2%)

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           +  + ++  + +R++++  R       +L+R  +  + F ++     +        ++  
Sbjct: 48  VTRLAEIDVSALRSWLADGRGAAEAPATLQRHWASARVFFRWACAEGLIGVDPAARLKAA 107

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K    LPR L   QA  L+D+ +   S +     AR++AIL +LYG G+R+ E   L   
Sbjct: 108 KVPRRLPRTLGVDQARRLLDDAVASASTDDSPQGARDAAILEVLYGSGIRVGELCGLDLS 167

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           ++   + TLR+ GKG K R VPL     +AI  +          +    LF G RG  ++
Sbjct: 168 SLDRARDTLRVLGKGSKERTVPLGDPGWRAIDGWLSRRSEWQTASSGQALFLGARGARID 227

Query: 240 PGVFQRYIRQ-LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           P V +R + Q LR   G P     H LRH+ ATHLL  G DLR++Q ILGH  L+TTQIY
Sbjct: 228 PRVVRRMVHQHLRSEPGFP-DLGPHGLRHAMATHLLEGGADLRTVQEILGHESLATTQIY 286

Query: 299 TNVNSKNGGDWMMEIYDQTHP 319
           T+V+++     +   ++Q HP
Sbjct: 287 THVSTER----LRRAFNQAHP 303


>gi|255011423|ref|ZP_05283549.1| putative tyrosine recombinase [Bacteroides fragilis 3_1_12]
 gi|313149239|ref|ZP_07811432.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313138006|gb|EFR55366.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 319

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 93/285 (32%), Positives = 150/285 (52%), Gaps = 12/285 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + Q L++E+ LSK TL +Y  D  + L FL   ++E + I    ++S  +++ F +  
Sbjct: 18  KKYQQYLKLEKSLSKNTLDAYLTDLDKLLNFL---SDEGVDIL---EISLKDLQRFAAGL 71

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               I  RS  R +SGIKSF  +L             +   K    LP  L  ++   ++
Sbjct: 72  HDIGIHARSQARIISGIKSFFHFLIMADYIEADPSELLEGPKIGFKLPEVLTVEEIDHII 131

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             V L     +K    RN AIL  LY CGLR+SE  +L   ++  ++  ++++GKG K R
Sbjct: 132 STVDL-----SKNEGQRNRAILETLYSCGLRVSELTNLKLSDLYFNEGFIKVEGKGSKQR 186

Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+ P   + I  Y+ D    ++  + +  LF   RG  L+  +    I++L    G+ 
Sbjct: 187 LVPISPRAIQEIKYYFMDRNRINIKKDYEDYLFLSRRGTHLSRIMIFHLIKELADMAGIT 246

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            + + HT RHSFATHLL  G +LR+IQ +LGH  +STT+IYT+++
Sbjct: 247 KNISPHTFRHSFATHLLEGGANLRAIQCMLGHESISTTEIYTHID 291


>gi|146280903|ref|YP_001171056.1| site-specific tyrosine recombinase XerC [Pseudomonas stutzeri
           A1501]
 gi|166918896|sp|A4VGW3|XERC_PSEU5 RecName: Full=Tyrosine recombinase xerC
 gi|145569108|gb|ABP78214.1| integrase/recombinase XerC [Pseudomonas stutzeri A1501]
 gi|327479172|gb|AEA82482.1| site-specific tyrosine recombinase XerC [Pseudomonas stutzeri DSM
           4166]
          Length = 299

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 152/313 (48%), Gaps = 27/313 (8%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E   + + L   R LS  +L +Y  D  + L +      E+  I   R L    +R  I+
Sbjct: 4   ELDAYFEYLRSARQLSGHSLDAYRRDLDKVLTYC-----ERERIAGWRDLQGRHLRHLIA 58

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           ++  Q    RSL R LS ++   +YL +  +        +   K    LPR L+  +A+ 
Sbjct: 59  EQHRQGQSSRSLARLLSSVRGLYRYLNQEGLCEHDPATGLSAPKGERRLPRLLDTDRAMQ 118

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+D  +     E  +I  R+ A+L L Y  GLR+SE + L    +      +R+ GKG+K
Sbjct: 119 LLDGGV-----EDDFIARRDQAMLELFYSSGLRLSELVGLNLDQLDLAAGLVRVLGKGNK 173

Query: 197 IRIVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR- 251
           +R +P+    R+A+  +  L     P D        +F G +G+ L     Q  +RQ   
Sbjct: 174 VRELPVGSKAREALQAWLPLRTLAGPADG------AVFIGQQGRRLGARAVQLRVRQAGV 227

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R LG  L    H LRHSFA+HLL +  DLRS+Q +LGH  + TTQIYT+++ ++    + 
Sbjct: 228 RELGQHLHP--HMLRHSFASHLLESSQDLRSVQELLGHADIGTTQIYTHLDFQH----LA 281

Query: 312 EIYDQTHPSITQK 324
           ++YD  HP   +K
Sbjct: 282 KVYDHAHPRAKRK 294


>gi|270285043|ref|ZP_06194437.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum Nigg]
 gi|270289068|ref|ZP_06195370.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum Weiss]
 gi|301336439|ref|ZP_07224641.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum
           MopnTet14]
          Length = 299

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 96/299 (32%), Positives = 156/299 (52%), Gaps = 24/299 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L ++RG++ L++Q+Y  D   FL        +++ I+T   ++   +  F+ K    K  
Sbjct: 17  LSVDRGIAPLSVQAYCQDILLFL--------QRVPIETTDMINQESVFLFVEKCHQAKES 68

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           + +L R L  +K F  +LK  K+  +   +    + K   LP  L+ ++  +L+ N  L+
Sbjct: 69  ETTLARRLIALKVFFHFLKDAKLIHQQPFIEHPKVWKR--LPSILSTEEVNSLL-NQPLN 125

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           T +   +I  R++AILY  Y  G+R+SE   L   +I DD   +R+ GKG K R+VP+  
Sbjct: 126 TLNLDAYIANRDTAILYTFYATGIRVSELCDLCIGDISDD--FIRVTGKGRKTRLVPISI 183

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
             R+ I  Y  L  F      + P    +F  IRGK L      + I    + +      
Sbjct: 184 KARQTIDSY--LTMFRERFQKKNPSEEHVFLSIRGKKLERSCVWKRITFYAKLVTTK-HI 240

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           + H+LRH+FATHLL+N  DLR IQ +LGH R+S+T+IYT+V S++    ++E +   HP
Sbjct: 241 SPHSLRHAFATHLLNNQADLRIIQEMLGHARISSTEIYTHVASES----IIEKFHTHHP 295


>gi|145298066|ref|YP_001140907.1| site-specific integrase/recombinase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850838|gb|ABO89159.1| site-specific integrase/recombinase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 303

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 157/302 (51%), Gaps = 16/302 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ERGLS  T+ SY  D  +F    AF+ + +   +++      +I+ +++ R
Sbjct: 15  EPFLDALWLERGLSDNTVSSYRSDLEKF----AFWLDGQG--RSLLLAGMDDIQHYLAWR 68

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
              +    S  R LS ++ F +YL + K+ ++   + +   K    LP  L+E +   L+
Sbjct: 69  VDHQFAASSTARFLSALRRFYQYLNREKLRSDDPTVLLEGPKLPKKLPSDLSEAEVEALL 128

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            + L+        ++ R+ A+L LLY  GLR+SE + LT +++   Q  +R+ GKG+K R
Sbjct: 129 QSPLVDDP-----LELRDKAMLELLYATGLRVSELVGLTAEHVSLRQGLVRVVGKGNKER 183

Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+       +  YY +     L       +F   + + +    F   I+   +  G+ 
Sbjct: 184 LVPMGEEAVHWLERYYREARTLLLGGTSSDVVFPSKQARMMTRQTFWHRIKLYAQRAGIR 243

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  ++ + 
Sbjct: 244 GELSPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVANER----LKALHGEH 299

Query: 318 HP 319
           HP
Sbjct: 300 HP 301


>gi|78046247|ref|YP_362422.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325925416|ref|ZP_08186815.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118]
 gi|325928769|ref|ZP_08189938.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118]
 gi|78034677|emb|CAJ22322.1| Site-specific recombinase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325540850|gb|EGD12423.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118]
 gi|325544176|gb|EGD15560.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118]
          Length = 305

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 155/314 (49%), Gaps = 27/314 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTI----RQLSYTEIRAF 74
            +L  L++ER +S  TL +Y  D    +++ A   TE  +    +     QL    +R F
Sbjct: 6   EFLTYLQVERQVSAHTLDAYRRDLAALVVWAAEQATEAGVQDAAVPGETAQLDSAHLRQF 65

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++    + +  +SL+R LS  +S+  +L K    + S    +R  K    LP+ L+  +A
Sbjct: 66  VAAEHRRGLSAKSLQRRLSACRSYYAWLLKHGRISASPAAALRAPKAPRKLPQVLDADEA 125

Query: 135 LTLVDNVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           + LV+             DA    R+ A+L + Y  GLR+SE  +L  +++  D   + +
Sbjct: 126 VRLVEVP----------TDAPLGLRDRALLEVFYSSGLRLSELCALRWRDLDLDSGLVMV 175

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG K R+VP+      A+ E+      D   +    +F G  G  ++    Q  I+QL
Sbjct: 176 LGKGSKQRLVPVGSHAIAALREWRR----DSGASADSHVFPGRAGGAISQRAVQIRIKQL 231

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+      H LRHSFA+H+L + GDLR +Q +LGH  ++TTQIYT+++ ++    +
Sbjct: 232 AVRQGMFKDVHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQH----L 287

Query: 311 MEIYDQTHPSITQK 324
            ++YD  HP   +K
Sbjct: 288 AKVYDAAHPRARRK 301


>gi|300870084|ref|YP_003784955.1| tyrosine recombinase XerD [Brachyspira pilosicoli 95/1000]
 gi|300687783|gb|ADK30454.1| tyrosine recombinase, XerD [Brachyspira pilosicoli 95/1000]
          Length = 288

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 161/304 (52%), Gaps = 19/304 (6%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +E+GLS+ TL+SY    R  +I+L F    K   +TI + +  +I  F+S+R+ Q    R
Sbjct: 1   MEKGLSQNTLESYR---RDIVIYLDFLGRNK---KTILKATRKDIEKFLSERKEQGSKSR 54

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL-LHT 145
           ++ R+   I +  K+L      +++   N+  ++    LP +L  ++    VD++L +H 
Sbjct: 55  TVARNKVSIVNLYKFLVMENYISKNPTDNLEVIRLKRVLPESLTTEE----VDDLLSVHN 110

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
               K +  R+ AI  L+Y  GLR+SE  SL  ++I  D+  L+I GKG + RIVP+   
Sbjct: 111 EKTDKGL--RDKAIFELMYSSGLRVSEICSLKIEDIFFDEKYLKICGKGKRERIVPINDK 168

Query: 206 VRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
               +  Y       +    +   LF   RG  ++     + +++  +  G+  +   HT
Sbjct: 169 ALDILKRYIQTSRVVMVKGKKTSELFLNFRGDKISRVGIWKIVKEAMKKSGIEKNVYPHT 228

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LRHSFATHL+ +G DLRS+Q +LGH  ++TT+IYT+V+S +    + +     HP  T+ 
Sbjct: 229 LRHSFATHLIQHGADLRSVQRMLGHSDITTTEIYTHVDSTHLKKQIAK-----HPKYTKH 283

Query: 325 DKKN 328
            ++N
Sbjct: 284 TRQN 287


>gi|300775316|ref|ZP_07085178.1| tyrosine recombinase XerD [Chryseobacterium gleum ATCC 35910]
 gi|300506056|gb|EFK37192.1| tyrosine recombinase XerD [Chryseobacterium gleum ATCC 35910]
          Length = 304

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 93/301 (30%), Positives = 150/301 (49%), Gaps = 12/301 (3%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  ER  S+ TL +Y  D ++    L  Y EE +       ++Y  ++ +I     QK  
Sbjct: 14  LRFERNFSENTLDAYVRDIKK----LKDYAEEDLENVGPDSIAYENLQEYIFNLSKQKFS 69

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           +RS  R +S IK+F K+L + +   ++    +   K    LP  L+      ++  + ++
Sbjct: 70  ERSQARWISSIKAFFKFLLEDEYREDNPAALLEGPKLGLYLPDTLSLPDINKIIAAIEVN 129

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           T      +  RN  I+ +LYGCGLR+SE + L   NI   +  +++ GKG+K R VPL  
Sbjct: 130 TD-----LGKRNQCIIEVLYGCGLRVSELIDLKISNINFKEQYIKVHGKGNKTRFVPLAD 184

Query: 205 SVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
                +  Y         +N   +  LF   RG  ++  +    I++L    G+    + 
Sbjct: 185 YTADLLDSYIKEVRSKGKINKKYEDTLFLNSRGTSMSRVIVFLIIKELTDKAGVNKKISP 244

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           HT RHSFATHLL NG DLR IQ +LGH  ++TT+IYT++ ++   D ++  Y   + +IT
Sbjct: 245 HTFRHSFATHLLQNGADLRYIQEMLGHSSITTTEIYTHLKTEELRDVILS-YHPRNINIT 303

Query: 323 Q 323
           Q
Sbjct: 304 Q 304


>gi|157692293|ref|YP_001486755.1| site-specific tyrosine recombinase XerC [Bacillus pumilus SAFR-032]
 gi|172046054|sp|A8FD78|XERC_BACP2 RecName: Full=Tyrosine recombinase xerC
 gi|157681051|gb|ABV62195.1| tyrosine recombinase [Bacillus pumilus SAFR-032]
          Length = 305

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 150/303 (49%), Gaps = 18/303 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +++ L+IE+  S LT+  Y     +F+ F+         I    ++SY + R ++++   
Sbjct: 11  FIEYLQIEKNYSALTISGYTEAIEEFVRFMNVQG-----IDGFEEVSYQDTRIYLTEAYE 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  R++ + +S ++SF K+L + ++  E+  L +   K+   +P  L E++       
Sbjct: 66  KGLTRRTISKKVSALRSFYKFLLREQLVKENPFLLVSLPKQDKRIPSFLYEEEL-----K 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            L   S  +  +  RN AIL LLY  G+R+SE  SL   ++     T+ + GKG K R V
Sbjct: 121 ELFTVSDVSTPLGQRNQAILELLYATGMRVSELCSLKESDLDLSMDTVLVHGKGSKQRYV 180

Query: 201 PLLPSVRKAILEYYDLCPFDLNLN----IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           P      +A++ Y +     L           +F   RG PL     +  + +L +    
Sbjct: 181 PFGSYAHEALITYLEDGRLKLKAKGKDRADAYVFLNQRGAPLTDRGVRFILTELMKKASG 240

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            L    H LRH+FATHLL+ G DLRS+Q +LGH  LS+TQ+YT+V+     D + + Y  
Sbjct: 241 TLHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVSK----DSLRKTYMS 296

Query: 317 THP 319
            HP
Sbjct: 297 HHP 299


>gi|226952079|ref|ZP_03822543.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244]
 gi|226837171|gb|EEH69554.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244]
          Length = 310

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 164/305 (53%), Gaps = 22/305 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+   I+   S  T+ +Y+ D   F  F  +   +++ ++ +     +++R +++ R  
Sbjct: 15  WLKERVIQNQ-SAHTISAYQRDLTDFFKFCEY---KQLQLEDV---EASDLREYLASRVE 67

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           Q ++   SL+R L+ I+ F+K+  + +    +   + +  ++   LP  ++    +  V+
Sbjct: 68  QDQLSSSSLQRHLTSIRQFMKWAAQGRYLQHNPSADFKLKRQPRPLPGMID----IETVN 123

Query: 140 NVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            +L  T+ E K ID     R+ A+L LLY  GLR++E   LT ++I  ++  LRI GKG+
Sbjct: 124 QILDQTAPE-KLIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLLRITGKGN 182

Query: 196 KIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K RIVP     +++++E+  +   +         +F   +G+ L P   +  ++   +  
Sbjct: 183 KTRIVPFGLKAKQSLIEWLKIYRIWQGGFTADSAVFISQQGRALMPRQIENRVKLQAQRA 242

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+ +    H LRH FA+H+LS  GDLRS+Q +LGH  LSTTQIYT+V+     D + ++Y
Sbjct: 243 GVNVDLHPHLLRHCFASHMLSASGDLRSVQEMLGHSNLSTTQIYTHVDF----DQLAKVY 298

Query: 315 DQTHP 319
           DQ HP
Sbjct: 299 DQAHP 303


>gi|126650133|ref|ZP_01722366.1| site-specific tyrosine recombinase XerD [Bacillus sp. B14905]
 gi|126593305|gb|EAZ87267.1| site-specific tyrosine recombinase XerD [Bacillus sp. B14905]
          Length = 300

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/309 (31%), Positives = 153/309 (49%), Gaps = 27/309 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  +++ER LS  TL SY  D   ++ FL    +    +    ++  T I   + + 
Sbjct: 9   EDYIHFIQVERQLSVNTLASYRRDLESYVNFL----QNAEGMADFNRVERTTILRHLEQL 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R Q    R++ R +S I+SF ++L + K       +++        LP  L+ ++     
Sbjct: 65  RAQGKTSRTIARHISSIRSFHQFLLREKRAESDPTVHLEMPTIEQKLPNILSIEEI---- 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL   + +K    R+ A+L LLYG G+RISE ++L   +I      +R+ GKG K R
Sbjct: 121 -EALLTAPNRSKPQGIRDLAMLELLYGSGMRISELIALDLADIHLTMGFVRVFGKGGKER 179

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL--------PLFRGIRGKPLNPGVFQRYIRQL 250
           I+PL  S   AI  Y +      N   QL          F   RGK L      + +++ 
Sbjct: 180 IIPLGKSALSAISTYLN------NARGQLQGKYPKTDAFFINQRGKRLTRQGCWKLMKEH 233

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+    T HTLRHSFATHL+ NG DLR++Q +LGH  +STTQIYT+++       +
Sbjct: 234 ALKAGIQHELTPHTLRHSFATHLVENGADLRAVQEMLGHADISTTQIYTHISKTR----L 289

Query: 311 MEIYDQTHP 319
            E+Y Q HP
Sbjct: 290 SEVYKQFHP 298


>gi|237797828|ref|ZP_04586289.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331020678|gb|EGI00735.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 290

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 149/303 (49%), Gaps = 21/303 (6%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           +L  ER +S  TL++Y  D  + L +      +K  + +  +L    +R+F +++  Q  
Sbjct: 2   HLRSERQVSPHTLEAYRRDLGKVLAYC-----QKAQLSSWNELDIQHLRSFTARQHQQGQ 56

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
             RSL R LS ++ F KYL +  I        +   K    LP+ L+  +   L+D  + 
Sbjct: 57  SSRSLARMLSAVRGFYKYLNREAICAHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGV- 115

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
               E  ++  R+ AIL L Y  GLR+SE   L    +      +++ GKG K R++P+ 
Sbjct: 116 ----EDDFLAHRDHAILELFYSSGLRLSELTGLNLDQLDLSDGLIQVLGKGSKTRVLPVG 171

Query: 204 PSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLSTT 261
              R+A+  +    P     N Q   +F   +GK L P   Q  ++    R LG  L   
Sbjct: 172 SKARRALETW---LPLRALANPQDDAVFVTRQGKRLGPRAVQVRLKAAGERELGQNLHP- 227

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            H LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +YD  HP  
Sbjct: 228 -HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDNAHPRA 282

Query: 322 TQK 324
            +K
Sbjct: 283 KRK 285


>gi|149917823|ref|ZP_01906318.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
 gi|149821343|gb|EDM80745.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
          Length = 346

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/322 (30%), Positives = 163/322 (50%), Gaps = 32/322 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L +L+ ER LS  T ++Y  D   F+  +    +    +   R L   E+RA++++  
Sbjct: 7   SFLVHLDKERRLSPNTCRAYARDIEGFIDNVEARRDRPAKL---RDLRLREVRAYLAELH 63

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            ++    ++ R LS +++F +Y ++     E+ +  MR  K    LP AL  +    ++D
Sbjct: 64  GKRAAS-TVGRKLSALRTFAEYCRREGWIAENEVALMRRPKLGRKLPVALPVEDLTEMID 122

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS------TLRI-QG 192
                       +  R+ A+L +LYG GLR+SEA++L   ++  + S      TLR+ QG
Sbjct: 123 G-----EQRPGAVGLRDRALLEVLYGAGLRVSEAVALNLADLRWEGSGDAARLTLRVLQG 177

Query: 193 KGDKIRIVPLLPSVRKAILEYYD-----LCPFD-------LNLNIQLPLFRGIRGKPLNP 240
           KG+K R+VPL     +A+  + D     L P           ++    +F G RG  L+ 
Sbjct: 178 KGNKDRVVPLGRKGAEAMRAWLDTREGLLAPTPREGMRSPARIDAGKAVFLGARGGRLST 237

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            V +  + +  +  G       H LRHSFATHLL +G DLRSIQS+LGH  LSTTQ YT+
Sbjct: 238 RVAREVVYRRCQASGARAVVGPHGLRHSFATHLLQSGCDLRSIQSMLGHASLSTTQRYTH 297

Query: 301 VNSKNGGDWMMEIYDQTHPSIT 322
           ++  +    +  +Y++ HP  +
Sbjct: 298 LDMGH----LFSLYERAHPRAS 315


>gi|330984816|gb|EGH82919.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 290

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/303 (32%), Positives = 150/303 (49%), Gaps = 21/303 (6%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           +L  ER +S  TL++Y  D  + L +      +K  + +   L    +R+F +++  Q  
Sbjct: 2   HLRSERQVSPHTLEAYRRDLGKVLAYC-----QKAQLSSWNDLDIQHLRSFTARQHQQGQ 56

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
             RSL R LS ++ F KYL +  I        M   K    LP+ L+  +   L+D  + 
Sbjct: 57  SSRSLARMLSAVRGFYKYLNREGICQHDPANGMSPPKGERRLPKTLDTDRTAQLLDGGV- 115

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
               E  ++  R+ AIL LLY  GLR+SE   L    +      +++ GKG K R++P+ 
Sbjct: 116 ----EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVG 171

Query: 204 PSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLSTT 261
              R+A LE +   P     N Q   +F   +GK L P   Q  ++    R LG  L   
Sbjct: 172 SKARQA-LEIW--LPLRALTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNLHP- 227

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            H LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +YD  HP  
Sbjct: 228 -HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAHPRA 282

Query: 322 TQK 324
            +K
Sbjct: 283 KRK 285


>gi|313204480|ref|YP_004043137.1| tyrosine recombinase xerd subunit [Paludibacter propionicigenes
           WB4]
 gi|312443796|gb|ADQ80152.1| tyrosine recombinase XerD subunit [Paludibacter propionicigenes
           WB4]
          Length = 302

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/281 (32%), Positives = 146/281 (51%), Gaps = 16/281 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFL--AFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           L++E+ LS  T+ +YE D ++  ++L  A    E+ T + +R         FI +  +  
Sbjct: 12  LKLEKALSANTIDAYERDLQKLTVYLSEAHVKPEEATTEILRD--------FIIEISSLG 63

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           I  RS  R LS IKSF  +L  + +        + + K    LP  L+  +   +V  + 
Sbjct: 64  IHPRSQARILSSIKSFYHFLIYKDVIDNDPTELLESPKTGLRLPEVLSLNEIDDIVSAID 123

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
           L     +K    RN AI+ +LYG GLR+SE + L    +  D+  + ++GKG K R+VP+
Sbjct: 124 L-----SKPEGQRNKAIIEVLYGSGLRVSELIGLQLSKMYMDEGYMLVEGKGSKQRLVPM 178

Query: 203 LPSVRKAI-LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            P   K I L   D    D+    +  LF   RG  L   +  + +++L    G+  + +
Sbjct: 179 SPQAMKQIELWKTDRNLLDIKKGNEDCLFLNRRGSKLTRDMIFKIVKELALLAGIRKNVS 238

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            HT RHSFATHLL NG +LR+IQ +LGH  ++TT+IYT+++
Sbjct: 239 PHTFRHSFATHLLENGANLRAIQQLLGHESITTTEIYTHID 279


>gi|219871550|ref|YP_002475925.1| site-specific tyrosine recombinase XerD [Haemophilus parasuis
           SH0165]
 gi|219691754|gb|ACL32977.1| site-specific tyrosine recombinase XerD [Haemophilus parasuis
           SH0165]
          Length = 297

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 153/303 (50%), Gaps = 18/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L  E+GLS+ T+ SY  D   F  +L+             ++ Y +++ F+ +R
Sbjct: 9   EQFLDTLWQEQGLSENTVASYRLDLESFTQWLS-------EPNAFLKVDYVDLQTFLGER 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R LS ++ F ++L   K   +     + + +K   LP++L+E+Q L L 
Sbjct: 62  LEQGYKATSSSRMLSCLRKFFRFLYLEKYRDDDPTATLTSPRKPAHLPKSLSEEQVLDL- 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
               L+  +    ++ R+ A+L LLY  GLR++E +SLT  N+   Q  +RI GKGDK R
Sbjct: 121 ----LNIPNTQDPLELRDKAMLELLYATGLRVTELVSLTLDNLSLRQGLVRIIGKGDKER 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       I ++++     L   +Q  + F    G  +    F   I+      G+ 
Sbjct: 177 LVPLGEEASYWIQQFFEYGRSSLLNGMQSDVVFPSRLGNQMTRQTFWHRIKHYALLAGID 236

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            +  + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT V        +  ++ Q
Sbjct: 237 SNKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTQVAKTR----LKSLHQQ 292

Query: 317 THP 319
            HP
Sbjct: 293 FHP 295


>gi|319937347|ref|ZP_08011754.1| site-specific tyrosine recombinase xerD [Coprobacillus sp. 29_1]
 gi|319807713|gb|EFW04306.1| site-specific tyrosine recombinase xerD [Coprobacillus sp. 29_1]
          Length = 301

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 156/306 (50%), Gaps = 23/306 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + Q + +E+G S+ T+++YE D   F+ F+     +K  +  +  +    +  ++ K 
Sbjct: 8   KEYKQYMIVEKGYSRYTVENYERDILHFINFI----HKKYEVDNVNNVIKDHMYHYL-KD 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +   S+ R ++ +K F  +L K  I  ++ + +    KK+  LP  L   +   L+
Sbjct: 63  LHNHLKASSVDRHMTSLKQFYIFLVKENIIKDNIMSSFEMSKKAKYLPEVLTVGEVNQLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D++ +        + ARN  ++ +LY  GLR+SE   LT QN+   +  ++  GK +K R
Sbjct: 123 DSIAV-----GDPVSARNRCMVEVLYASGLRVSEMCFLTLQNVNIHKGFVKCIGKRNKER 177

Query: 199 IVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           IVP+  +    + EY +     LC     ++ Q  LF   RG+P+    F   +  + + 
Sbjct: 178 IVPMNENCCLLLKEYIEEYRPQLCE---EVSSQY-LFINKRGQPIQRDDFYHILENIVKK 233

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL    T HTLRH+FATHLL N  DLRSIQ +LGH  +STT IYT+V++       +E 
Sbjct: 234 SGLKKHVTPHTLRHTFATHLLENDADLRSIQEMLGHSDISTTTIYTHVSNNKA----IEE 289

Query: 314 YDQTHP 319
           Y + HP
Sbjct: 290 YRKLHP 295


>gi|15834875|ref|NP_296634.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum Nigg]
 gi|34223084|sp|Q9PL53|XERD_CHLMU RecName: Full=Tyrosine recombinase xerD
 gi|7190294|gb|AAF39124.1| integrase/recombinase XerD [Chlamydia muridarum Nigg]
          Length = 301

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/299 (32%), Positives = 156/299 (52%), Gaps = 24/299 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L ++RG++ L++Q+Y  D   FL        +++ I+T   ++   +  F+ K    K  
Sbjct: 19  LSVDRGIAPLSVQAYCQDILLFL--------QRVPIETTDMINQESVFLFVEKCHQAKES 70

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           + +L R L  +K F  +LK  K+  +   +    + K   LP  L+ ++  +L+ N  L+
Sbjct: 71  ETTLARRLIALKVFFHFLKDAKLIHQQPFIEHPKVWKR--LPSILSTEEVNSLL-NQPLN 127

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           T +   +I  R++AILY  Y  G+R+SE   L   +I DD   +R+ GKG K R+VP+  
Sbjct: 128 TLNLDAYIANRDTAILYTFYATGIRVSELCDLCIGDISDD--FIRVTGKGRKTRLVPISI 185

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
             R+ I  Y  L  F      + P    +F  IRGK L      + I    + +      
Sbjct: 186 KARQTIDSY--LTMFRERFQKKNPSEEHVFLSIRGKKLERSCVWKRITFYAKLVTTK-HI 242

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           + H+LRH+FATHLL+N  DLR IQ +LGH R+S+T+IYT+V S++    ++E +   HP
Sbjct: 243 SPHSLRHAFATHLLNNQADLRIIQEMLGHARISSTEIYTHVASES----IIEKFHTHHP 297


>gi|253700949|ref|YP_003022138.1| tyrosine recombinase XerD [Geobacter sp. M21]
 gi|251775799|gb|ACT18380.1| tyrosine recombinase XerD [Geobacter sp. M21]
          Length = 292

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/300 (32%), Positives = 150/300 (50%), Gaps = 18/300 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +E+G +  T+ +Y  D  ++L+FL     E   I+ I      ++  F++K + 
Sbjct: 8   FLNYLLVEKGAAANTVAAYSRDLNRYLLFLG--EREPDGIRPI------DVTGFLAKLKG 59

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + I  RS  R+LS ++   ++L +      +    +   K    LP  L+ ++       
Sbjct: 60  EGIAPRSRARALSALRMLHRFLLREGYCELNPTAIVEAPKGVRKLPAVLSGREV-----E 114

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL + H+T   + R+ A+L LLY  GLR+SE + L    +      L   GKGDK R+V
Sbjct: 115 ALLSSPHDTGAQELRDKAMLELLYATGLRVSELVGLKLGEVNLSAGYLMTIGKGDKERLV 174

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+  S  +A   Y      +L      PL F    G  ++   F   I++     G+  S
Sbjct: 175 PIGESACRATGAYLQKARGELLKGKASPLLFLSRLGGGMSRQAFWNIIKKRALQAGVRAS 234

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRHSFATHLL NG DLRS+Q +LGH  LS+TQIYT+V  +     M +++ + HP
Sbjct: 235 ISPHTLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRER----MKKLHAEFHP 290


>gi|254492686|ref|ZP_05105857.1| tyrosine recombinase XerD [Methylophaga thiooxidans DMS010]
 gi|224462207|gb|EEF78485.1| tyrosine recombinase XerD [Methylophaga thiooxydans DMS010]
          Length = 303

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 154/302 (50%), Gaps = 16/302 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L +L +E GLS+ T+++Y    R  L F A+  +  + +    Q    +I+ + S+R
Sbjct: 15  QPFLDSLWLEAGLSQNTVEAYR---RDLLAFAAWLAKLDVDLAAATQ---HDIQRYQSQR 68

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +    RS  R LS ++ F +YL +  I        + + +    LP +L E+      
Sbjct: 69  MREGRKVRSEARLLSTLRRFYRYLLREDIRDSDPTAQLESPRLGKPLPDSLTEQDV---- 124

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL     T  +  R+  +L LLY  GLR+SE + L  + I   Q  +R  GKG+K R
Sbjct: 125 -EDLLAQPDITDLLGLRDRTMLELLYASGLRVSELVGLKQEQINMRQGLVRCIGKGNKER 183

Query: 199 IVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       + +Y Y+  P  LN  +   +F   RGK +    F   I++  +   + 
Sbjct: 184 LVPLGEVALDWLQQYFYESRPGLLNGKVTDDVFPTRRGKAMTRQAFWYIIKRYAKQAQIQ 243

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V  +     + +++ Q 
Sbjct: 244 KTLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKER----LKQLHGQH 299

Query: 318 HP 319
           HP
Sbjct: 300 HP 301


>gi|120436224|ref|YP_861910.1| tyrosine recombinase [Gramella forsetii KT0803]
 gi|117578374|emb|CAL66843.1| tyrosine recombinase [Gramella forsetii KT0803]
          Length = 298

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/311 (31%), Positives = 160/311 (51%), Gaps = 28/311 (9%)

Query: 19  QNWLQN----LEIERGLSKLTLQSYECDTRQFLIFLAF----YTEEKITIQTIRQLSYTE 70
           QN L++    L++ERGLS+ ++ +Y  D  + + +L       + +KI+ + I++  Y+ 
Sbjct: 4   QNALKDYQYYLKLERGLSENSIANYSLDVIKLINYLDVNEIQISPDKISEKWIQEFIYS- 62

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
               +SK     +  RS  R +SG++SF  YL    +  +    N  +L +S  + R L 
Sbjct: 63  ----VSK----DLNARSQSRLISGLRSFFSYL----LFEDYRKDNPLDLMESPKIGRKLP 110

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           +  ++  VD ++      +K    RN AI+  LYGCGLR+SE   L   ++   +  +++
Sbjct: 111 DTISIAEVDKIIAAIDL-SKNEGERNRAIIETLYGCGLRVSELTDLKISDLFFKEGFIKV 169

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            GKGDK R VP+     K I  Y D      D+       LF   RG  L   +    ++
Sbjct: 170 TGKGDKQRFVPISEYTVKFINLYKDQVRNHQDIKPEATDTLFLNRRGNKLTRAMIFTIVK 229

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L    G+    + HT RHSFATHLL NG DLR+IQ +LGH  ++TT++Y +V+  +   
Sbjct: 230 KLTEVAGISKKVSPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEVYVHVDRSH--- 286

Query: 309 WMMEIYDQTHP 319
            + ++ +Q HP
Sbjct: 287 -LRQVMEQFHP 296


>gi|308448796|ref|XP_003087755.1| hypothetical protein CRE_30625 [Caenorhabditis remanei]
 gi|308253057|gb|EFO97009.1| hypothetical protein CRE_30625 [Caenorhabditis remanei]
          Length = 543

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 171/324 (52%), Gaps = 16/324 (4%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E++ +  ++    W+++ +I+   S  TL +Y  D   F+ F     +++I +   +Q+ 
Sbjct: 233 ELMQYGAMQLLSMWIKDRKIQNQ-SVHTLDAYFRDVSNFIDFC---YDKQIEL---KQVE 285

Query: 68  YTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
             ++R +++ R    ++   SL+R L+ I+ F+K+ K+      +   + +  +++  LP
Sbjct: 286 AADLREYVAYRVEKDQLSTSSLQRHLTSIRQFMKWAKQGGYLEINAADDFQIKRQARPLP 345

Query: 127 RALNEKQALTLVDNVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
             ++ +    ++D        E + W+  R+ AIL LLY  GLR++E  SL  ++I   +
Sbjct: 346 GMIDIETVNQIMDQPEPEKPIEKQLWL--RDKAILELLYSSGLRLAEVQSLAIRDIDFTR 403

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQ 244
             LRI GKG+K RIVP     R +++E+  +   +    + +  +F   RG  ++P   +
Sbjct: 404 HLLRITGKGNKTRIVPFGSKARDSLIEWLKIYRIWQGEFSPESLVFITQRGTSISPRQIE 463

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             ++      G+ +    H LRH FA+H+LSN GDLR++Q +LGH  L+TTQIYT+V+  
Sbjct: 464 NRVKYQALRAGVNVDLHPHLLRHCFASHMLSNSGDLRAVQEMLGHSNLTTTQIYTHVDF- 522

Query: 305 NGGDWMMEIYDQTHPSITQKDKKN 328
              D + ++YDQ HP       KN
Sbjct: 523 ---DHLAQVYDQAHPRAAASKIKN 543


>gi|196047758|ref|ZP_03114951.1| tyrosine recombinase XerC [Bacillus cereus 03BB108]
 gi|196021406|gb|EDX60120.1| tyrosine recombinase XerC [Bacillus cereus 03BB108]
          Length = 299

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 158/311 (50%), Gaps = 31/311 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R +++  
Sbjct: 8   QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDITYADVRLYLTTL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137
             +K+  +S+ R +S ++S  ++L  R+   + N   + +L KK  S+P+ L  ++    
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               L   S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG K 
Sbjct: 119 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248
           R +P     + A++ Y +      N   QL          +F   +G PL     +  + 
Sbjct: 177 RYIPFGSYAQDALITYIE------NGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLN 230

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L +   L +  + H LRH+FATH+L  G DLR++Q +LGH  LS TQIYT+V+     +
Sbjct: 231 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSATQIYTHVSK----E 286

Query: 309 WMMEIYDQTHP 319
            +  +Y + HP
Sbjct: 287 RLRSVYMKHHP 297


>gi|206890528|ref|YP_002247908.1| tyrosine recombinase XerD [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742466|gb|ACI21523.1| tyrosine recombinase XerD [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 294

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/310 (33%), Positives = 161/310 (51%), Gaps = 26/310 (8%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E+LK+  N+L     E+ LS  T++SYE D + FL +L   TE+ I +   ++    +I 
Sbjct: 5   EILKKFLNYLLT---EKALSINTVKSYENDLKNFLKWL---TEQNILVLNCKK---DDIV 55

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            ++   + +     S+ R LS +K F +++    I        +++ K    LP+AL   
Sbjct: 56  QYLLNLKEKAYSSTSIARILSSLKQFFRFMIFDSIINHDPTEGLKSPKLWLRLPKALE-- 113

Query: 133 QALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
                +D V  LL    E+K+   R+ A+L L+Y  GLR+SE + L   +I  +   +R+
Sbjct: 114 -----IDEVKRLLSVMLESKYY-LRDIAMLELMYASGLRVSELVRLKLSDINFEAGFIRV 167

Query: 191 QGKGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           +GKGDK R+VP+       I  Y   L P  L       +F   RG+P+    F + I+ 
Sbjct: 168 KGKGDKERVVPIAQRSIDKIKNYLVKLRPVLLKKKASEYVFLNNRGQPMTRQRFWQNIKA 227

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           + R  G+  + T H +RHSFATHLL  G DLRS+Q +LGH  +STTQIYT V+     D 
Sbjct: 228 IGRIAGV--NVTPHMIRHSFATHLLEGGADLRSLQKMLGHSDISTTQIYTKVSM----DR 281

Query: 310 MMEIYDQTHP 319
           + + Y + HP
Sbjct: 282 LRKEYLKHHP 291


>gi|330878502|gb|EGH12651.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 290

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 149/303 (49%), Gaps = 21/303 (6%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           +L  ER +S  TL++Y  D  + L F      +K  + +   L    +R+F +++  Q  
Sbjct: 2   HLRSERQVSPHTLEAYRRDLSKVLTFC-----QKAQLSSWNDLDIQHLRSFTARQHQQGQ 56

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
             RSL R LS ++ F KYL +  +        +   K    LP+ L+  +   L+D  + 
Sbjct: 57  SSRSLARMLSAVRGFYKYLNREGLCQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGV- 115

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
               E  ++  R+ AI+ LLY  GLR+SE   L    +      +++ GKG K R++P+ 
Sbjct: 116 ----EDDFLAHRDQAIMELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVG 171

Query: 204 PSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLSTT 261
              R+A+  +    P     N Q   +F   +GK L P   Q  I+    R LG  L   
Sbjct: 172 SKARQALETW---LPLRALTNPQDDAVFVSQQGKRLGPRAVQLRIKTAGERELGQNLH-- 226

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            H LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +YD  HP  
Sbjct: 227 PHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAHPRA 282

Query: 322 TQK 324
            +K
Sbjct: 283 KRK 285


>gi|325576773|ref|ZP_08147388.1| site-specific tyrosine recombinase XerC [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160979|gb|EGC73097.1| site-specific tyrosine recombinase XerC [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 295

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/301 (32%), Positives = 151/301 (50%), Gaps = 19/301 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L IER LS  TL +Y+      L  LA    EK  IQ  +Q++ + +R  +++ R   + 
Sbjct: 12  LRIERQLSPHTLTNYQHQLNAILAILA----EK-GIQHWQQVNPSVVRLILAESRKHGLK 66

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           ++SL   LS ++ F  YL  +     +    +   K+S  LP+ ++ +Q   L+ N    
Sbjct: 67  EKSLALRLSALRQFFSYLVHQGQMKVNPATGISAPKQSKHLPKNIDAEQVQKLLSN---- 122

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
                  ID R+ A++ L+Y  GLR+SE   L   +I      +R+ GKG+K RIVP   
Sbjct: 123 --DSKDPIDLRDRAMMELMYSSGLRLSELQGLNLNSINTRVREVRVIGKGNKERIVPFGR 180

Query: 205 SVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
               AI ++  + P F+   +    +F   +G  L     Q+ +       GL      H
Sbjct: 181 YASHAIQQWLKVRPLFNPKDD---AIFVSQQGNRLTHRSIQKRMENWGIRQGLNSHLNPH 237

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    + E+YDQ HP   +
Sbjct: 238 KLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEVYDQAHPRAKR 293

Query: 324 K 324
           K
Sbjct: 294 K 294


>gi|319791651|ref|YP_004153291.1| integrase family protein [Variovorax paradoxus EPS]
 gi|315594114|gb|ADU35180.1| integrase family protein [Variovorax paradoxus EPS]
          Length = 317

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 155/317 (48%), Gaps = 29/317 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+++ +ER L+  T++ Y    +      A        +QT        IR +++K  +
Sbjct: 19  YLEHVRVERRLAARTVELYAFHLQALRENAAEANLPLDRVQT------AHIRRWMAKLHS 72

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                R +   LS  +SF ++L    +   + + ++   K    LP+AL    A+ L + 
Sbjct: 73  AGREPRGIALVLSCWRSFYRWLGHEGLIGFNPVQDVHAPKAGRPLPKALGVDDAVQLAE- 131

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ------NIMD-DQSTLRIQGK 193
             LH      WI+AR+ AI+ +LYGCGLR+SE   L  Q        +D D     + GK
Sbjct: 132 --LHDEDADPWIEARDRAIVEILYGCGLRVSELTGLDAQASNTALGWVDLDAKEANVLGK 189

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRR 252
           G K RIVP+     +A+ E+      D+  +  +P LF   +G  ++     + +R+   
Sbjct: 190 GSKRRIVPVGSKAAEALQEW-----LDVRGDRSVPALFVSSKGARMSSQAVWKLLRERSL 244

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFA+H+L +  DLR++Q +LGH  ++TTQIYT ++ ++    + +
Sbjct: 245 KAGLAAPVHPHMLRHSFASHVLQSSSDLRAVQELLGHANIATTQIYTRLDFQH----LAK 300

Query: 313 IYDQTHP---SITQKDK 326
            YD  HP   + T KDK
Sbjct: 301 AYDAAHPRAKARTDKDK 317


>gi|154686030|ref|YP_001421191.1| site-specific tyrosine recombinase XerC [Bacillus amyloliquefaciens
           FZB42]
 gi|154351881|gb|ABS73960.1| CodV [Bacillus amyloliquefaciens FZB42]
          Length = 305

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 152/302 (50%), Gaps = 17/302 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +++ L+IE+  S+ T+ +Y     +F +FL         I  +++ +Y ++R F+++   
Sbjct: 12  FVEYLQIEKNYSQYTIVNYVNSIEEFGMFL-----HAQNINGMKEAAYHDVRIFLTEAYE 66

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  +++ + +S ++SF K+L + K+  E+    +   K+   +P+ L EK+       
Sbjct: 67  KGLSRKTISKKISALRSFYKFLMREKLVEENPFQLVHLPKQEKRIPKFLYEKEL-----E 121

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            L   S  ++    R+ A+L LLY  G+R+SE  +LT  ++     T+ + GKG K R +
Sbjct: 122 ELFAVSDRSQPSGMRDQALLELLYATGMRVSECCTLTVGDLDLFMDTVLVHGKGKKQRYI 181

Query: 201 PLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           P     R A+  Y +    C  +        LF   RG PL     +  +  L +     
Sbjct: 182 PFGSYARDALELYINSGRQCLLEKAKEPHDVLFVNQRGGPLTARGIRYILSGLVKKASGT 241

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           L    H LRH+FATHLL+ G DLRS+Q +LGH  LS+TQIYT+V+     + +   Y   
Sbjct: 242 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSK----EMLRNTYMSH 297

Query: 318 HP 319
           HP
Sbjct: 298 HP 299


>gi|92115127|ref|YP_575055.1| tyrosine recombinase XerD subunit [Chromohalobacter salexigens DSM
           3043]
 gi|91798217|gb|ABE60356.1| tyrosine recombinase XerD subunit [Chromohalobacter salexigens DSM
           3043]
          Length = 295

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/306 (32%), Positives = 148/306 (48%), Gaps = 17/306 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+ R  +L  L +ERGLS+ TL +Y  D   +L  LA           +       +  F
Sbjct: 4   LEWRDAFLDGLWLERGLSQHTLAAYRRDLDAWLAHLAARG------ACLMAPDEQALETF 57

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++ RR +    RS+ R LS ++ F ++       +   + + R  +    LP  L+E + 
Sbjct: 58  LAARR-EHYHPRSVARLLSCLRRFYRWALAEGHVSVDPLADARAPRAVTKLPDTLDEAE- 115

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
              V+ +L     E   +  R+  +L +LYGCGLR+SE + LT   +   Q  LR+ GKG
Sbjct: 116 ---VERLLAAPDVELP-LGLRDRTMLEVLYGCGLRVSELVGLTVDAVNLRQGVLRVLGKG 171

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           DK R+VPL       +  Y      DL  +  + PLF G     +    F   I++    
Sbjct: 172 DKERLVPLGEEATAWLARYLRQGRGDLMQDPTRPPLFPGRHDGFMTRQTFWHRIKRHAVS 231

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    + HTLRH+FATHLL++G +LR +Q +LGH  LSTTQIYT V        +  +
Sbjct: 232 AGIDKPLSPHTLRHAFATHLLNHGANLRVVQMLLGHSDLSTTQIYTQVAQAR----LEAL 287

Query: 314 YDQTHP 319
           + Q HP
Sbjct: 288 HAQHHP 293


>gi|320354502|ref|YP_004195841.1| tyrosine recombinase XerC [Desulfobulbus propionicus DSM 2032]
 gi|320123004|gb|ADW18550.1| tyrosine recombinase XerC [Desulfobulbus propionicus DSM 2032]
          Length = 303

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 156/313 (49%), Gaps = 24/313 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +++ L +E+G S  T   Y+ D  +F  F          + +   ++ + ++AF+   
Sbjct: 6   ERFVRWLLVEKGYSPHTADGYQRDLLEFQRFCG-------GVLSPESITSSLVQAFVGSL 58

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S+ R LS +++F ++L + K+     +  +   K  ++LP  L   +  +L+
Sbjct: 59  YASN-ASASVARKLSALRTFFRFLLREKVIESDPVAGIVGPKLGHALPAFLTVDEVFSLL 117

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +      + +  W   R+ A++ +LY  G+R++E +    +++      +R++GKG K R
Sbjct: 118 ETP---ATSDRYW--RRDRAVMEVLYATGMRVAELVGCNREDVDLAAEMVRVRGKGRKER 172

Query: 199 IVPLLPSVRKAILEYYD----LCPFDLNLN---IQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           +VP   +  +A+ +Y      LC   +       Q  LF   RG  L+    +R I+   
Sbjct: 173 LVPFGRAAHEALEQYLPEREALCIARVQRGRKPEQRALFLNGRGTRLSARSVERSIQTYA 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+ ++ T H LRHSFATHLL  G DLR++Q +LGH  LSTTQ YT++N     D + 
Sbjct: 233 LRAGIGVTVTPHALRHSFATHLLEMGADLRTVQELLGHVSLSTTQKYTHINI----DHLS 288

Query: 312 EIYDQTHPSITQK 324
           ++YDQ HP   +K
Sbjct: 289 KVYDQAHPQAQKK 301


>gi|301155134|emb|CBW14598.1| site-specific tyrosine recombinase [Haemophilus parainfluenzae
           T3T1]
          Length = 295

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/301 (32%), Positives = 152/301 (50%), Gaps = 19/301 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L IER +S  TL +Y+      L  LA    EK  IQ  +Q++ + +R  +++ R Q + 
Sbjct: 12  LRIERQVSPHTLTNYQHQLDAILAILA----EK-GIQHWQQVNPSVVRLILAESRKQGLK 66

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           ++SL   LS ++ F  YL ++     +    +   K+   LP+ ++ +Q   L+ N    
Sbjct: 67  EKSLALRLSALRQFFSYLVQQGQMKVNPATGISAPKQGKHLPKNIDAEQVQKLLSN---- 122

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
                  ID R+ A++ L+Y  GLR+SE   L   +I      +R+ GKG+K RIVP   
Sbjct: 123 --DSKDPIDLRDRAMMELMYSSGLRLSELQGLNLNSINTRVREVRVIGKGNKERIVPFGR 180

Query: 205 SVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
               AI ++  + P F+   +    LF   +G  L     Q+ +       GL      H
Sbjct: 181 YASHAIQQWLKVRPLFNPKDD---ALFVSQQGNRLTHRSIQKRMETWGIRQGLNSHLNPH 237

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    + E+YDQ HP   +
Sbjct: 238 KLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEVYDQAHPRAKR 293

Query: 324 K 324
           K
Sbjct: 294 K 294


>gi|91781471|ref|YP_556677.1| site-specific tyrosine recombinase XerC [Burkholderia xenovorans
           LB400]
 gi|91685425|gb|ABE28625.1| Putative integrase/recombinase [Burkholderia xenovorans LB400]
          Length = 307

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 155/316 (49%), Gaps = 29/316 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L NLE ER LS  TL+ Y  +  +  +            + +  LS  +IR  +S+   
Sbjct: 10  YLSNLEHERRLSAHTLRGYTHELEELKLL--------AKGRPLESLSAVDIRGAVSRAHA 61

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS+   LS  ++F ++L  R     + +  +R  K+  +LP+AL+   A  L+++
Sbjct: 62  GGLTARSISHRLSAWRAFYRWLAGRVDLPANPVATVRAPKQPKTLPKALSVDDATRLMES 121

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-----------IMDDQSTLR 189
               +         R+ A+L L Y  GLR++E + L  +            I  D + + 
Sbjct: 122 PPAASPEGL-----RDHAMLELFYSSGLRLAELVGLDARFADADGYRSAGWIKLDSAEVE 176

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG++ R+VP+  S     L  +      +  +   PLF   RG  L+P V +  +++
Sbjct: 177 VLGKGNRRRVVPV-GSKALEALAAWLAVRDQMVKHDPHPLFLSARGNRLSPNVVRERVKR 235

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+P +   H LRHSFATH+L + GDLR++Q +LGH  ++ TQ+YT ++ ++    
Sbjct: 236 AALVAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTALDFQH---- 291

Query: 310 MMEIYDQTHPSITQKD 325
           +  +YDQ HP   ++D
Sbjct: 292 LAHVYDQAHPRAKKRD 307


>gi|227504282|ref|ZP_03934331.1| site-specific tyrosine recombinase XerD [Corynebacterium striatum
           ATCC 6940]
 gi|227199121|gb|EEI79169.1| site-specific tyrosine recombinase XerD [Corynebacterium striatum
           ATCC 6940]
          Length = 298

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 148/302 (49%), Gaps = 14/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q WL +L +E+G S  TL +Y  D R++L +LA        I  +  +    +  ++   
Sbjct: 8   QTWLNHLAVEKGASANTLSNYRRDVRRYLGWLA-----DNGIDDLADVDRGMVEEYLKFL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R       + +  +   +   K+     +        +   K +  LP  L   +   L+
Sbjct: 63  RGGLAAASASRALIVA-RGLHKFGVAEGVLDVDVAGEVAPPKNAAHLPETLRVDEVEKLI 121

Query: 139 DNVLLHTSHETKW-IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           D+V      ET   ID R+ A+L +LYG G RISE ++L+  ++ D+   L + GKG+K 
Sbjct: 122 DSV---PDGETATPIDIRDRALLEMLYGTGARISEVIALSVDDMSDNDGILVLTGKGNKQ 178

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VP+    +KA+ EY       L+      LF   RG  L+       ++   +  GL 
Sbjct: 179 RMVPVGSQAQKAVEEYLVRARPVLSKGKSHALFLNTRGGALSRQSAWAALKLAVQRAGLN 238

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            S + HTLRHSFATHLL  G D+R++Q +LGH  ++TTQIYT+V +    D + E++   
Sbjct: 239 KSISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTA----DSLREVWRTA 294

Query: 318 HP 319
           HP
Sbjct: 295 HP 296


>gi|116671017|ref|YP_831950.1| tyrosine recombinase XerC subunit [Arthrobacter sp. FB24]
 gi|116611126|gb|ABK03850.1| tyrosine recombinase XerC subunit [Arthrobacter sp. FB24]
          Length = 308

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 160/323 (49%), Gaps = 21/323 (6%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE---EK 57
           M+  +LP      L    + + + LE ER  S  T+++Y  D    L   A       + 
Sbjct: 1   MDTPDLPPA----LADAARGFGRYLEGERARSPHTVRAYLSDVHSLLTVAAADGATDLDG 56

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           I + T+R+    +  A +S+         +L R  +  +SF  +  + ++      L ++
Sbjct: 57  IELATLRRWLGAQSEARMSRS--------TLARRAATARSFTSWAVREELLGSDPALRLK 108

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             K+  SLP  L+++Q L +VD+ L   + +   +  R+ A++ LLY  G+R+ E   + 
Sbjct: 109 APKRERSLPGVLHQQQVLRVVDH-LKAAAEDGGPLALRDRAMVELLYATGVRVGELAGMD 167

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGK 236
             ++  D+ TLR+ GKG+K R VP       A+ ++       L ++   P LF G RG+
Sbjct: 168 VDDLDPDRRTLRVVGKGNKERTVPYGLPAAVAVDDWLRRGRPVLAVDGSGPALFLGARGR 227

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            ++    +  ++ +   LG   +T  H LRHS ATHLL  G DLR++Q ILGH  L+TTQ
Sbjct: 228 RVDQRQVRTVVKDVLDALGDTAATGPHALRHSAATHLLDGGADLRAVQEILGHSSLATTQ 287

Query: 297 IYTNVNSKNGGDWMMEIYDQTHP 319
           IYT+V+ +     + + Y Q HP
Sbjct: 288 IYTHVSVER----LRQSYQQAHP 306


>gi|73748515|ref|YP_307754.1| tyrosine recombinase XerC [Dehalococcoides sp. CBDB1]
 gi|147669296|ref|YP_001214114.1| tyrosine recombinase XerC subunit [Dehalococcoides sp. BAV1]
 gi|289432563|ref|YP_003462436.1| tyrosine recombinase XerC [Dehalococcoides sp. GT]
 gi|73660231|emb|CAI82838.1| tyrosine recombinase XerC [Dehalococcoides sp. CBDB1]
 gi|146270244|gb|ABQ17236.1| tyrosine recombinase XerC subunit [Dehalococcoides sp. BAV1]
 gi|288946283|gb|ADC73980.1| tyrosine recombinase XerC [Dehalococcoides sp. GT]
          Length = 307

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/310 (31%), Positives = 155/310 (50%), Gaps = 35/310 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L +E+ +S  TL++Y  D    + F+ +  E+K++  +  ++    +R ++S    
Sbjct: 8   YLEYLSVEKNVSPYTLRNYRTD---LIGFVNYLIEKKVS--SFDRVDRYILRDYMSSLIA 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + I   S+ R LS ++SF +YL +  +  ++  LN  + +    LP  L   +      N
Sbjct: 63  KGIVKGSIARKLSAVRSFYRYLMREGLIQKNPTLNASSPRLDKRLPEFLTVTEV-----N 117

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL     +     R+ A + LLY  GLR+SE + L  +N+      +R+ GKG K R+V
Sbjct: 118 KLLRVPDSSTPQGLRDKAFMELLYASGLRVSELVKLDIENMDLHSHQIRVWGKGSKERVV 177

Query: 201 -PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---LNPG-------VFQRYIRQ 249
              LP++ ++I  Y         LN+  PL +G R  P   LNP         FQ  + +
Sbjct: 178 LAGLPAI-QSIQNY---------LNLGRPLLKGKRNTPALFLNPTGGRLSARSFQERLDK 227

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           L +  G+      H LRH+FATHLL  G DLR +Q +LGH  LSTTQIYT+V        
Sbjct: 228 LAKQAGIEKHVHPHMLRHTFATHLLDGGADLRVVQELLGHSNLSTTQIYTHVTKSQA--- 284

Query: 310 MMEIYDQTHP 319
             ++Y  +HP
Sbjct: 285 -RKVYMSSHP 293


>gi|119776379|ref|YP_929119.1| integrase/recombinase XerC [Shewanella amazonensis SB2B]
 gi|171704602|sp|A1SAP3|XERC_SHEAM RecName: Full=Tyrosine recombinase xerC
 gi|119768879|gb|ABM01450.1| integrase/recombinase XerC [Shewanella amazonensis SB2B]
          Length = 296

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 163/322 (50%), Gaps = 40/322 (12%)

Query: 15  LKERQNWLQN----LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI---QTIRQLS 67
           + ++ +WL+     L  ER LS +T+++Y            F  E   T+   ++ +QLS
Sbjct: 1   MADQASWLERFTRYLATERQLSPMTVRNYR-----------FELERADTLLGQRSWQQLS 49

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
             ++   +++   Q +  RSL  + S +K F ++L K  +   +    +   K+S +LP+
Sbjct: 50  RQDLSGLMARLHRQGLSPRSLSLTASALKQFGQFLLKEGLIDTNPAATLSAPKQSKTLPK 109

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L+         N LL    E   +  R+ AI+ L Y CGLR++E  +L  +++  +   
Sbjct: 110 NLDPDSV-----NHLLDIPPEDG-LALRDKAIMELFYSCGLRLAELAALDVKDLDRESRE 163

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGV 242
           +R+ GKG K RI+P+      AI ++       L +  Q+P     LF   RG  L+   
Sbjct: 164 VRVIGKGSKERILPVGSVALAAIGDW-------LKVRNQMPCQDDALFVSSRGSRLSHRS 216

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            Q  + +  +  GL +    H LRHSFATH+L + GDLR++Q +LGH  L+TTQIYT+++
Sbjct: 217 IQARMEKWAQIQGLSVGVHPHKLRHSFATHMLESSGDLRAVQELLGHANLATTQIYTSLD 276

Query: 303 SKNGGDWMMEIYDQTHPSITQK 324
            ++    + ++YD  HP   +K
Sbjct: 277 FQH----LAKVYDGAHPRARKK 294


>gi|330828608|ref|YP_004391560.1| Tyrosine recombinase XerD [Aeromonas veronii B565]
 gi|328803744|gb|AEB48943.1| Tyrosine recombinase XerD [Aeromonas veronii B565]
          Length = 303

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 156/302 (51%), Gaps = 16/302 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ERGLS  T+ SY  D  +F ++L    +E+ +  ++      EI+ +++ R
Sbjct: 15  EPFLDALWLERGLSDNTVSSYRSDLEKFSLWL----DEQGS--SLLLAGMDEIQHYLAWR 68

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
              +    S  R LS ++ F +YL + K+ ++   + +   K    LP  L+E +   L+
Sbjct: 69  VDHQFAASSTARFLSALRRFYQYLNREKLRSDDPTVLLEGPKLPKKLPSDLSETEVEALL 128

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L+        ++ R+ A+L LLY  GLR+SE + LT +++   Q  +R+ GKG+K R
Sbjct: 129 SAPLVDDP-----LELRDKAMLELLYATGLRVSELVGLTAEHVSLRQGLVRVVGKGNKER 183

Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+       +  YY +     L       +F   + + +    F   I+      G+ 
Sbjct: 184 LVPMGEEAMHWLERYYREARTLLLGGTSSDVVFPSKQARMMTRQTFWHRIKLYALRAGIN 243

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  ++ + 
Sbjct: 244 GELSPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVANER----LKALHGEH 299

Query: 318 HP 319
           HP
Sbjct: 300 HP 301


>gi|16078677|ref|NP_389496.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221309489|ref|ZP_03591336.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313814|ref|ZP_03595619.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318738|ref|ZP_03600032.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323009|ref|ZP_03604303.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321315380|ref|YP_004207667.1| site-specific tyrosine recombinase XerC [Bacillus subtilis BSn5]
 gi|729174|sp|P39776|XERC_BACSU RecName: Full=Tyrosine recombinase xerC
 gi|535348|gb|AAB03369.1| CodV [Bacillus subtilis subsp. subtilis str. JH642]
 gi|2633986|emb|CAB13487.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|320021654|gb|ADV96640.1| site-specific tyrosine recombinase XerC [Bacillus subtilis BSn5]
          Length = 304

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 155/308 (50%), Gaps = 17/308 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +++ L+IE+  S+ T+ +Y     +F  FL         I    + +Y + R F+++   
Sbjct: 11  FVEYLQIEKNYSQYTIVNYVDSIEEFETFLRVQG-----INGFEEAAYQDTRIFLTEAYE 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  R++ + +S ++SF K+L + K+  E+    +   K+   +P+ L +K+   L + 
Sbjct: 66  KGLSRRTISKKISALRSFYKFLMREKLIEENPFQLVHLPKQEKRIPKFLYQKELEELFE- 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                S  ++    R+ A+L LLY  G+R+SE  S+T  ++     T+ + GKG K R +
Sbjct: 125 ----VSDISQPAGMRDQALLELLYATGMRVSECCSITINDVDLFMDTVLVHGKGKKQRYI 180

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           P     R+A+  Y +     L +  + P   LF   RG PL     +  +  L +     
Sbjct: 181 PFGSYAREALKVYMNSGRQCLLMKAKEPHDLLFVNQRGGPLTARGIRHILSGLVQKASST 240

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           L    H LRH+FATHLL+ G DLRS+Q +LGH  LS+TQIYT+V+     + +   Y   
Sbjct: 241 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSK----EMLRNTYMSH 296

Query: 318 HPSITQKD 325
           HP   +K+
Sbjct: 297 HPRAFKKN 304


>gi|167856576|ref|ZP_02479280.1| tyrosine recombinase XerD [Haemophilus parasuis 29755]
 gi|167852293|gb|EDS23603.1| tyrosine recombinase XerD [Haemophilus parasuis 29755]
          Length = 297

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 152/303 (50%), Gaps = 18/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L  E+GLS+ T+ SY  D   F  +L+             ++ Y +++ F+ +R
Sbjct: 9   EQFLDTLWQEQGLSENTVASYRLDLESFTQWLS-------EPNAFLKVDYVDLQTFLGER 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R LS ++ F ++L   K   +     + + +K   LP++L+E+Q L L 
Sbjct: 62  LEQGYKATSSSRMLSCLRKFFRFLYLEKYRDDDPTATLTSPRKPAHLPKSLSEEQVLDL- 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
               L+       ++ R+ A+L LLY  GLR++E +SLT  N+   Q  +RI GKGDK R
Sbjct: 121 ----LNIPDTQDPLELRDKAMLELLYATGLRVTELVSLTLDNLSLRQGLVRIIGKGDKER 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       I ++++     L   +Q  + F    G  +    F   I+      G+ 
Sbjct: 177 LVPLGEEASYWIQQFFEYGRSSLLNGMQSDVVFPSRLGNQMTRQTFWHRIKHYALLAGID 236

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            +  + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT V        +  ++ Q
Sbjct: 237 SNKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTQVAKTR----LKSLHQQ 292

Query: 317 THP 319
            HP
Sbjct: 293 FHP 295


>gi|91792109|ref|YP_561760.1| tyrosine recombinase XerD [Shewanella denitrificans OS217]
 gi|91714111|gb|ABE54037.1| Tyrosine recombinase XerD [Shewanella denitrificans OS217]
          Length = 303

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/300 (33%), Positives = 147/300 (49%), Gaps = 16/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L   +GLS  TL SY  D R F  +LA    +++ +    Q     +R +++ R+ 
Sbjct: 17  FLDALWSSKGLSNNTLASYGTDLRHFQRYLA---AQQLNLLDASQ---ETVRQYLAWRQE 70

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     S  R +S ++ F  Y    K         + + K S  LP AL+E +    VD 
Sbjct: 71  QGFAKSSSARLMSSLRRFYAYWLSLKRIAIDPCAKLASPKLSRGLPAALSEAE----VDA 126

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +L   + +   I+ R+ A+L LLY  GLR++E +SLT   I   Q  +RI GKG K R+V
Sbjct: 127 LLSEPAADDP-IEIRDKAMLELLYATGLRVTELVSLTMDQISLRQGLVRITGKGGKERLV 185

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           PL       +  Y  L   +L    Q   LF   RG  +    F   I+       +   
Sbjct: 186 PLGELAVAEVDTYLSLARSELLKGKQSEVLFPSKRGTMMTRQTFWHRIKHYALRASIATE 245

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + +++ Q HP
Sbjct: 246 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKAR----LQDLHRQHHP 301


>gi|85712976|ref|ZP_01044015.1| Site-specific recombinase [Idiomarina baltica OS145]
 gi|85693214|gb|EAQ31173.1| Site-specific recombinase [Idiomarina baltica OS145]
          Length = 301

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 152/301 (50%), Gaps = 15/301 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + ++++L +  G+S+ T  +Y  D ++F  FLA   + ++ +    Q++ T ++ ++  R
Sbjct: 14  EQFVEHLWLAHGVSENTQAAYRSDLKKFCEFLA---QHRLGLH---QVTSTVVQDYLLWR 67

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R+Q +  RS  R LS +K    Y  K        I  ++  K S ++P +L E   L+L+
Sbjct: 68  RSQGLSPRSTSRFLSAMKKLTPYALKSGWFVTDPIAKLKRPKMSPAVPHSLTESDVLSLL 127

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D   + T      I  R+ A+L +LY  GLR++E + L    +   Q  +R+ GKGDK R
Sbjct: 128 DAPDVDTP-----IGLRDRAMLEVLYATGLRVTELVRLQYDQVSLAQGLVRVVGKGDKER 182

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VPL     + +  Y       L+      +F   RG  L    F   IR       +  
Sbjct: 183 LVPLGEEAIEWLSRYMKSGRPVLSERQSGWVFITQRGTLLTRQAFWYRIRTYAEQAQINS 242

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT V  +     + +++   H
Sbjct: 243 HLSPHTLRHAFATHLLNHGADLRVLQMLLGHSDLSTTQIYTQVAKER----LQQMHATFH 298

Query: 319 P 319
           P
Sbjct: 299 P 299


>gi|315223453|ref|ZP_07865310.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287]
 gi|314946626|gb|EFS98617.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287]
          Length = 307

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 147/299 (49%), Gaps = 15/299 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L IE   S  T+++Y+ D R F  F+    EEK     + Q    +I+ +I     + I 
Sbjct: 10  LSIEMKYSDHTVEAYKHDLRSFEKFIKSLYEEKGEDCCLEQADQEDIKKWIIHLSDETIS 69

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITT----ESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            RS+ R LS +K++  +LKK K       E  I  ++  KK + LP +  E      ++ 
Sbjct: 70  FRSINRKLSALKTYYNFLKKTKQIEISPFEKGIFLLKTEKK-HKLPFSEAE------IEK 122

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           VL   S +  + + RN A++  LY  G+R SE   L   ++  +Q  +++ GKGDK R +
Sbjct: 123 VLSFFSSKDSFDEVRNRAVIETLYATGIRRSELSGLKVSDVDFEQKQIKVLGKGDKERYI 182

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P++P +   + EY  L     N   Q  LF    GK +   +  R I      +      
Sbjct: 183 PIIPELENTLKEYLVLREEVKNEKSQDYLFLVKNGKKIYSTLVYRIINSYFSVVTTKKDV 242

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           + H LRHSFA+HLL NG DL +++ +LGH  L++TQ+YTN +       + + Y + HP
Sbjct: 243 SPHVLRHSFASHLLDNGADLYTVKELLGHSSLASTQVYTNTSLAE----LKKQYKKAHP 297


>gi|229047517|ref|ZP_04193107.1| Tyrosine recombinase xerC [Bacillus cereus AH676]
 gi|228723764|gb|EEL75119.1| Tyrosine recombinase xerC [Bacillus cereus AH676]
          Length = 299

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 163/308 (52%), Gaps = 25/308 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R +++  
Sbjct: 8   QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYLTTL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137
             +K+  +S+ R +S ++S  ++L  R+   + N   + +L KK  S+P+ L  ++   L
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEELEEL 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            +   + T      +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG K 
Sbjct: 122 FEVSDMETP-----LGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176

Query: 198 RIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           R +P     + +++ Y +      +   D + ++   +F   +G PL     +  + +L 
Sbjct: 177 RYIPFGSYAQDSLITYIENGRKQLVNKTDEDSHM---VFLNAKGTPLTSRGVRYVLNELI 233

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +   L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+     + + 
Sbjct: 234 KKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----ERLR 289

Query: 312 EIYDQTHP 319
            +Y + HP
Sbjct: 290 SVYMKHHP 297


>gi|87307014|ref|ZP_01089160.1| integrase/recombinase [Blastopirellula marina DSM 3645]
 gi|87290387|gb|EAQ82275.1| integrase/recombinase [Blastopirellula marina DSM 3645]
          Length = 300

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 148/301 (49%), Gaps = 14/301 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L +ER  S LT++SY  D    + +L    E      +  ++S  ++R +++    
Sbjct: 8   FLRYLRVERNASDLTIKSYGEDLEALVDYL---EELYAAPASTGEVSTLDLRGYVAAVSD 64

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
               + ++ R L+ ++SF ++ ++ ++   S    +RN ++   LP  L   +   L+  
Sbjct: 65  AGYAETTVSRRLASMRSFFRFAQREELIDRSPAKPLRNPRRKRKLPHFLTGDEISKLLSA 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
              +TS        R+ AI    Y  GLR+SE + L   +I  +Q  +RI+GKG + R+ 
Sbjct: 125 PPANTS-----AGLRDRAIFETTYSAGLRVSELVGLNDSDIDAEQGLIRIRGKGKRERLG 179

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           PL     KA+ ++              + P+F    G  L      R + +     GL  
Sbjct: 180 PLGSYAIKALHDWLSQRTLSARAAAAKEKPVFTNKFGNRLTTRSVGRMLEKYIAIAGLDT 239

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
            T+ HTLRHSFATHLL  G D+RS+Q +LGH  L TTQIYT+V++      + E Y++ H
Sbjct: 240 RTSPHTLRHSFATHLLDAGADIRSVQELLGHKSLVTTQIYTHVSTTR----LKEAYEKAH 295

Query: 319 P 319
           P
Sbjct: 296 P 296


>gi|320326565|gb|EFW82616.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320331369|gb|EFW87310.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330881323|gb|EGH15472.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 299

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 151/306 (49%), Gaps = 21/306 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +  +L  ER +S  TL++Y  D  + L +      +K  + +   L    +R+F +++  
Sbjct: 8   YCMHLRSERQVSPHTLEAYRRDLSKVLAYC-----QKAQLSSWNDLDIQHLRSFTARQHQ 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q    RSL R LS ++ F KYL +  I        +   K    LP+ L+  +   L+D 
Sbjct: 63  QGQSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDG 122

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +     E  ++  R+ AIL LLY  GLR+SE   L    +      +++ GKG K R++
Sbjct: 123 GV-----EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVL 177

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPL 258
           P+    R+A LE +   P     N Q   +F   +GK L P   Q  ++    R LG  L
Sbjct: 178 PVGSKARQA-LEIW--LPLRALTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNL 234

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +YD  H
Sbjct: 235 HP--HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAH 288

Query: 319 PSITQK 324
           P   +K
Sbjct: 289 PRAKRK 294


>gi|218235700|ref|YP_002368632.1| site-specific tyrosine recombinase XerC [Bacillus cereus B4264]
 gi|229111302|ref|ZP_04240855.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-15]
 gi|229129107|ref|ZP_04258080.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-Cer4]
 gi|229146402|ref|ZP_04274773.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST24]
 gi|229152030|ref|ZP_04280225.1| Tyrosine recombinase xerC [Bacillus cereus m1550]
 gi|296504326|ref|YP_003666026.1| site-specific tyrosine recombinase [Bacillus thuringiensis BMB171]
 gi|218163657|gb|ACK63649.1| tyrosine recombinase XerC [Bacillus cereus B4264]
 gi|228631379|gb|EEK88013.1| Tyrosine recombinase xerC [Bacillus cereus m1550]
 gi|228637035|gb|EEK93494.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST24]
 gi|228654344|gb|EEL10209.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-Cer4]
 gi|228672078|gb|EEL27369.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-15]
 gi|296325378|gb|ADH08306.1| site-specific tyrosine recombinase [Bacillus thuringiensis BMB171]
          Length = 299

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 161/308 (52%), Gaps = 25/308 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R +++  
Sbjct: 8   QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYLTTL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137
             +K+  +S+ R +S ++S  ++L  R+   + N   + +L KK  S+P+ L  ++    
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               L   S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG K 
Sbjct: 119 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176

Query: 198 RIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           R +P     + +++ Y +      +   D + ++   +F   +G PL     +  + +L 
Sbjct: 177 RYIPFGSYAQDSLITYIENGRKQLVNKTDEDSHM---VFLNAKGTPLTSRGVRYVLNELI 233

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +   L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+     + + 
Sbjct: 234 KKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----ERLR 289

Query: 312 EIYDQTHP 319
            +Y + HP
Sbjct: 290 SVYMKHHP 297


>gi|75763959|ref|ZP_00743586.1| Integrase/recombinase (XerD/RipX family) [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74488552|gb|EAO52141.1| Integrase/recombinase (XerD/RipX family) [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 302

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 159/311 (51%), Gaps = 31/311 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R +++  
Sbjct: 11  QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYLTTL 65

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137
             +K+  +S+ R +S ++S  ++L  R+   + N   + +L KK  S+P+ L  ++    
Sbjct: 66  HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               L   S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG K 
Sbjct: 122 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248
           R +P     + +++ Y +      N   QL          +F   +G PL     +  + 
Sbjct: 180 RYIPFGSYAQDSLITYIE------NGRKQLVNKTDEDSRMVFLNAKGTPLTSRGVRYVLN 233

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L +   L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+     +
Sbjct: 234 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 289

Query: 309 WMMEIYDQTHP 319
            +  +Y + HP
Sbjct: 290 RLRSVYMKHHP 300


>gi|307565005|ref|ZP_07627522.1| putative tyrosine recombinase XerD [Prevotella amnii CRIS 21A-A]
 gi|307346318|gb|EFN91638.1| putative tyrosine recombinase XerD [Prevotella amnii CRIS 21A-A]
          Length = 310

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/283 (33%), Positives = 149/283 (52%), Gaps = 18/283 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L++E+G S+ T+ +Y  D  +   FL     EKI +  +R     ++  F +      IG
Sbjct: 19  LKLEKGYSEHTIDAYMRDIEKLSSFLE---AEKIDVLDVR---LEDLERFTACMSELGIG 72

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            RSL R LSGI+ F ++L    I      ++   L +S   P+ L E  +   VD ++L+
Sbjct: 73  ARSLSRVLSGIRHFYRFL----ILDGYLEIDPTELLESPKQPKHLPEVLSTAEVD-IILN 127

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           +   TKW   RN AI+ +L+ CGLR+SE  SL   N+   +  +RI GKG K R+VP+ P
Sbjct: 128 SIDLTKWEGQRNKAIIEVLFSCGLRVSELTSLKISNLYFQEQYVRIMGKGSKERLVPISP 187

Query: 205 SVRKAILE----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
              +AI E    + D     +       +F   RG  L   +    +++     G+  + 
Sbjct: 188 ---RAIEELNYWFLDRSQMKIKEGEDDYVFLNRRGSHLTRTMILIMLKRYAYAAGIKKTI 244

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           + HTLRHSFAT LL  G DLRSIQ++LGH  + TT++YT++++
Sbjct: 245 SPHTLRHSFATALLEGGADLRSIQAMLGHESIVTTELYTHLDT 287


>gi|239636836|ref|ZP_04677835.1| tyrosine recombinase XerD [Staphylococcus warneri L37603]
 gi|239597510|gb|EEQ80008.1| tyrosine recombinase XerD [Staphylococcus warneri L37603]
          Length = 295

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 159/305 (52%), Gaps = 21/305 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE---IRAFI 75
           + +L+ ++IE+GLS  T+ +Y  D  ++        +E + +Q I  + + +   I+  +
Sbjct: 6   EEYLKFIQIEKGLSVNTIGAYRRDLNKY--------KEYLDLQKISNIDFVDRQTIQECL 57

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                Q    +S+ R +S I+SF ++  + K   +   + +   K    LP  L   + +
Sbjct: 58  GYLIDQGQSSKSIARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEVDEVI 117

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L++   L+ ++       R+  +L LLY  G+R+SE + +  +++      +R+ GKGD
Sbjct: 118 DLLNAPDLNKNN-----GYRDRTMLELLYATGMRVSEVIQIEVEDVNLMMGFVRVFGKGD 172

Query: 196 KIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K RIVPL  +V   +  Y +   P  L   +   LF  + GKPL+     + ++Q     
Sbjct: 173 KERIVPLSDTVIDYLTTYIETVRPQLLKQTVTNVLFLNMHGKPLSRQGIWKMMKQNGLKA 232

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            +  + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y
Sbjct: 233 NINKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMY 288

Query: 315 DQTHP 319
           +Q HP
Sbjct: 289 NQYHP 293


>gi|239816431|ref|YP_002945341.1| tyrosine recombinase XerD [Variovorax paradoxus S110]
 gi|239803008|gb|ACS20075.1| tyrosine recombinase XerD [Variovorax paradoxus S110]
          Length = 303

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 163/308 (52%), Gaps = 22/308 (7%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E  +++  L +E GLSK TL +Y  D    L   A +   + + + +     ++++A++ 
Sbjct: 11  EIDDFIDALWLEDGLSKNTLAAYRRD----LALFAQWLGSQRSGRALDTAQESDLQAYMG 66

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRA---LNEK 132
            R + +    S  R L+  K + ++ L++R+I  + +I     L  +  +PRA   L+EK
Sbjct: 67  ARLSTRGKATSANRRLTVFKRYYRWALRERRIAADPSI----RLAPARQMPRAIKTLSEK 122

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q    VD++L     ET  +  R+ A+L L+Y  GLR+SE ++L   ++  +   LR+ G
Sbjct: 123 Q----VDDLLAAPDVETP-LGLRDRAMLELMYASGLRVSELVALKVIDMSLNDGVLRVLG 177

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG K R+VP     R+ I  Y D   P  L+      LF   RG  +   +F   +++  
Sbjct: 178 KGSKERLVPFGGEARRWIERYLDESRPTILDGQQTPDLFVTARGAGMTRVMFWIIVKKQA 237

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+ +  + HTLRH+FATHLL+ G DLR++Q +LGH  +STT IYT+V  +     + 
Sbjct: 238 AAAGIHVPLSPHTLRHAFATHLLNRGVDLRAVQLLLGHADISTTTIYTHVARER----LK 293

Query: 312 EIYDQTHP 319
           +++ Q HP
Sbjct: 294 QLHAQHHP 301


>gi|167622800|ref|YP_001673094.1| tyrosine recombinase XerD [Shewanella halifaxensis HAW-EB4]
 gi|167352822|gb|ABZ75435.1| tyrosine recombinase XerD [Shewanella halifaxensis HAW-EB4]
          Length = 300

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/301 (33%), Positives = 152/301 (50%), Gaps = 18/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L   +GLS  TL +Y  D R    +L     E +T       S  E+R ++++R  
Sbjct: 14  FLDDLWSTKGLSDNTLSAYRTDLRHLDRYLQKLGGELVTC------SQLEVRDYLAERFD 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           +     S  R +S ++ F  YL  K++I T+   L + + K S  LP +L+E+       
Sbjct: 68  KGSAKTSSARMMSSLRRFYGYLIVKKQIDTDPMAL-IESPKLSRKLPDSLSEEDI----- 121

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           + LL    E   I+ R+ A+L LLY  GLR+SE + LT + +   Q  +RI GKG K R+
Sbjct: 122 DRLLAEPIEDDPIECRDKAMLELLYATGLRVSELVGLTMEQLSLRQGLVRITGKGGKERL 181

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VPL       I  Y      +L    Q   LF   RG+ +    F   I+      G+  
Sbjct: 182 VPLGELAITEIESYLKFARTELLKGKQSDVLFPSKRGQQMTRQTFWHRIKLYALRAGIST 241

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V +      +  ++ + H
Sbjct: 242 ELSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATAR----LATLHSEHH 297

Query: 319 P 319
           P
Sbjct: 298 P 298


>gi|294625642|ref|ZP_06704265.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|294666817|ref|ZP_06732050.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292600065|gb|EFF44179.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292603401|gb|EFF46819.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 305

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 153/314 (48%), Gaps = 27/314 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT-----EEKITIQTIRQLSYTEIRAF 74
            +L  L++ER +S  TL +Y  D    +++ A  T     ++        Q     +R F
Sbjct: 6   EFLTYLQVERQVSAHTLDAYRRDLAALVVWAAEQTTDDGVQDAAVPAETAQFDSAHLRQF 65

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++    + +  +SL+R LS  +S+  +L K    + S    +R  K    LP+ L+  +A
Sbjct: 66  VAAEHRRGLSAKSLQRRLSACRSYYAWLLKHGRISASPAAALRAPKAPRKLPQVLDADEA 125

Query: 135 LTLVDNVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           + LV+             DA    R+ A+L + Y  GLR+SE  +L  +++  D   + +
Sbjct: 126 VRLVEVP----------TDAPLGLRDRALLEVFYSSGLRLSELCALRWRDLDLDSGLVMV 175

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG K R+VP+      A+ E+      D   +    +F G  G  ++    Q  I+QL
Sbjct: 176 LGKGSKQRLVPVGSHAIAALREWRR----DSGASADSHVFPGRAGGAISQRAVQIRIKQL 231

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+      H LRHSFA+H+L + GDLR +Q +LGH  ++TTQIYT+++ ++    +
Sbjct: 232 AVRQGMFKDVHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQH----L 287

Query: 311 MEIYDQTHPSITQK 324
            ++YD  HP   +K
Sbjct: 288 AKVYDAAHPRARRK 301


>gi|209521419|ref|ZP_03270129.1| tyrosine recombinase XerC [Burkholderia sp. H160]
 gi|209498137|gb|EDZ98282.1| tyrosine recombinase XerC [Burkholderia sp. H160]
          Length = 307

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 158/322 (49%), Gaps = 41/322 (12%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +LE ER LS  TL+ Y  +  +         ++    + +  L+  +IR  +++   
Sbjct: 10  YLSHLEHERRLSAHTLRGYTHELEEL--------KQLAKGRPLESLTAVDIRGAVARAHA 61

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS+   LS  ++F ++L  R     + +  +R  K++ +LP+AL+   A  L+DN
Sbjct: 62  GGLTARSIGHRLSAWRAFYRWLAGRVELPANPVAAVRAPKQAKTLPKALSVDDAARLMDN 121

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL-----------TPQNIMDDQSTLR 189
               +         R+ A+L L Y  GLR++E + L           +   +  D + + 
Sbjct: 122 PAADSPEGL-----RDHAMLELFYSSGLRLAELVGLDVRFADIDGHRSAGWLKLDAAEVE 176

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL------PLFRGIRGKPLNPGVF 243
           + GKG++ R+VP+      A+  +       L +  Q+      PLF   RG  L+P V 
Sbjct: 177 VLGKGNRRRVVPVGSKAVAALNAW-------LGVRDQMVRHDPHPLFLSTRGNRLSPNVV 229

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +  +++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  ++ TQ+YT ++ 
Sbjct: 230 RERVKRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTGLDF 289

Query: 304 KNGGDWMMEIYDQTHPSITQKD 325
           ++    +  +YD  HP   +++
Sbjct: 290 QH----LAHVYDSAHPRAKKRN 307


>gi|328541970|ref|YP_004302079.1| Tyrosine recombinase XerD [polymorphum gilvum SL003B-26A1]
 gi|326411720|gb|ADZ68783.1| Tyrosine recombinase XerD [Polymorphum gilvum SL003B-26A1]
          Length = 308

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 140/292 (47%), Gaps = 17/292 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           R+++L+ L  ERG +  TL SY  D   F  FL             R  +  ++ A++S 
Sbjct: 8   RESFLEMLAAERGAAHNTLDSYRRDLDDFAAFLG--------TTATRDATAEDVSAYLSD 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S  R LS ++ + K+L       +     + + KK   LPR L+E +   L
Sbjct: 60  LAARGFAASSQARRLSALRQYFKFLYAEGERGDDPTRTLASPKKRQGLPRILSEAEVDRL 119

Query: 138 VDNVLLHTS--HETKWIDARNS---AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           ++      +  HET     R      +L +LY  GLR+SE ++L     + D   + I+G
Sbjct: 120 IEAACFDATLEHETPGRALRAQRLYTLLEVLYATGLRVSELVALPVGAALRDARLIGIRG 179

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF--RGIRGKPLNPGVFQRYIRQL 250
           KG K R+VPL P  ++A+  Y      +        LF   G  G       F R ++ L
Sbjct: 180 KGGKERLVPLSPRAQEAMRAYVARRNAEGAYKGSPWLFPSHGESGH-FTRQAFARDLKDL 238

Query: 251 RRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            R +GL  +  + H LRH+FA+HLL NG DLR +Q +LGH  +STTQIYT+V
Sbjct: 239 ARAVGLDAAKVSPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHV 290


>gi|21241407|ref|NP_640989.1| site-specific tyrosine recombinase XerC [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|34222918|sp|Q8PPP9|XERC_XANAC RecName: Full=Tyrosine recombinase xerC
 gi|21106742|gb|AAM35525.1| site-specific recombinase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 305

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 155/318 (48%), Gaps = 35/318 (11%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR---------QLSYTE 70
            +L  L++ER +S  TL +Y  D    L  L  +  E+ T   ++         Q     
Sbjct: 6   EFLTYLQVERQVSAHTLDAYRRD----LAALVVWASEQKTDDGVQDAAVPAETAQFDSAH 61

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +R F++    + +  +SL+R LS  +S+  +L KR   + S    +R  K    LP+ L+
Sbjct: 62  LRQFVAAEHRRGLSAKSLQRRLSACRSYYAWLLKRGRISASPAAALRAPKAPRKLPQVLD 121

Query: 131 EKQALTLVDNVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             +A+ LV+             DA    R+ A+L + Y  GLR+SE  +L  +++  D  
Sbjct: 122 ADEAVRLVEVP----------TDAPLGLRDRALLEVFYSSGLRLSELCALRWRDLDLDSG 171

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            + + GKG K R+VP+      A+ E+      D   +    +F G  G  ++    Q  
Sbjct: 172 LVMVLGKGSKQRLVPVGSHAIAALREWRR----DSGASADSHVFPGRAGGAISQRAVQIR 227

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           I+QL    G+      H LRHSFA+H+L + GDLR +Q +LGH  ++TTQIYT+++ ++ 
Sbjct: 228 IKQLAVRQGMFKDVHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQH- 286

Query: 307 GDWMMEIYDQTHPSITQK 324
              + ++YD  HP   +K
Sbjct: 287 ---LAKVYDAAHPRARRK 301


>gi|257791164|ref|YP_003181770.1| integrase family protein [Eggerthella lenta DSM 2243]
 gi|317488103|ref|ZP_07946680.1| phage integrase [Eggerthella sp. 1_3_56FAA]
 gi|325832921|ref|ZP_08165594.1| phage integrase, N-terminal SAM domain protein [Eggerthella sp.
           HGA1]
 gi|257475061|gb|ACV55381.1| integrase family protein [Eggerthella lenta DSM 2243]
 gi|316912811|gb|EFV34343.1| phage integrase [Eggerthella sp. 1_3_56FAA]
 gi|325485786|gb|EGC88250.1| phage integrase, N-terminal SAM domain protein [Eggerthella sp.
           HGA1]
          Length = 323

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 149/318 (46%), Gaps = 20/318 (6%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P IV  EL+     +   + +ER  S  TL++Y  D    + F  +   E+I I      
Sbjct: 19  PRIV--ELIDA---FCHAMRVERNASVHTLRAYRID---LMDFARWACRERIDILAA--- 67

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           ++ ++R ++ +    +    ++ R LS ++SF ++L    I  E     ++  K+  SLP
Sbjct: 68  THRQLRRYLGELDRAQYSRTTVNRRLSALRSFFRWLNVTGIADEDPASILQGPKQPKSLP 127

Query: 127 RALNEKQALTLV----DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             +     + L+             E   +DARN A+L  LY CG R+SEA  L   N+ 
Sbjct: 128 HVIRASDMVKLLTVYGKRDAAGREREQSSVDARNLALLEFLYACGARVSEASGLLAANVD 187

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPG 241
                +++ GKG K RIVPL      ++  Y     P  L        F   RG  +   
Sbjct: 188 FGSGQVKVFGKGSKERIVPLHDMAVSSMRAYATWARPLILRDRTCDYFFVSTRGNRMGTD 247

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             ++  +   R  GL  S + H +RH+FAT LL  G DLRS+Q +LGH  LSTTQIYT++
Sbjct: 248 AIRKMFKDALRQAGLDESLSPHDMRHTFATDLLDGGADLRSVQEMLGHASLSTTQIYTHL 307

Query: 302 NSKNGGDWMMEIYDQTHP 319
           +       + +++ +THP
Sbjct: 308 SPGR----LKQVHARTHP 321


>gi|114561848|ref|YP_749361.1| tyrosine recombinase XerD [Shewanella frigidimarina NCIMB 400]
 gi|114333141|gb|ABI70523.1| tyrosine recombinase XerD [Shewanella frigidimarina NCIMB 400]
          Length = 305

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/302 (33%), Positives = 160/302 (52%), Gaps = 18/302 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L +L    GLS  TL SY  D +    ++   T+ K  +Q  + L    +R ++++R 
Sbjct: 18  QFLDDLWSTNGLSDNTLVSYRTDLQNAERYI--LTKGKDLLQVDQAL----LRDYLAERF 71

Query: 80  TQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            ++    S  R LS ++ F  YL  K+KI+ +   L +++ K    LP  L+E Q    +
Sbjct: 72  DKQFAKSSTARLLSSLRRFYAYLLVKQKISQDPTAL-IKSPKLVRQLPDTLSEAQ----I 126

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           DN+L   + +   I+ R+ A+L LLY  GLR++E +SLT + I   Q  +R+ GKG K R
Sbjct: 127 DNLLSEPNIDDP-IEHRDKAMLELLYATGLRVTELVSLTMEQISLRQGLVRVMGKGGKER 185

Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL      A+ +Y      +L ++     LF   RG+ +    F   I+      G+ 
Sbjct: 186 LVPLGELAITAVEQYIKFARAELLSMKQSDVLFPSRRGQMMTRQTFWHRIKLYAARAGIQ 245

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + +++ Q 
Sbjct: 246 CHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKVR----LQQLHSQH 301

Query: 318 HP 319
           HP
Sbjct: 302 HP 303


>gi|310642630|ref|YP_003947388.1| phage integrase:phage integrase, n-terminal sam-like protein
           [Paenibacillus polymyxa SC2]
 gi|309247580|gb|ADO57147.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Paenibacillus polymyxa SC2]
          Length = 314

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 152/311 (48%), Gaps = 26/311 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++Q +E E+GLS+ TL++Y+ D +QF  F      E   ++    +  + +  ++   
Sbjct: 6   QPFVQYMEEEKGLSRSTLEAYQRDVQQFAEFA-----ESCGLEQPDNVQRSHLVLYLGHL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + Q     ++ RS++ I+SF  +L +  I      + +        LP+A  +K ++   
Sbjct: 61  KEQGKAAATISRSVASIRSFFHFLIREGIAIHDPSVLV-------ELPKATKKKPSVLTQ 113

Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           D +  LL     +     R+ A+L LLY  G+R+SE ++L   ++  D   +   G+  K
Sbjct: 114 DEIERLLAAPDVSAPQGGRDKAMLELLYATGIRVSELIALNVCDVRIDLRFVHCGGEAGK 173

Query: 197 IRIVPLLPSVRKAILEYYD------LCPF--DLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            R+VP+     +    Y D      L P   +     Q  LF  + G+ L+   F + I+
Sbjct: 174 ERVVPISREASQWAQAYLDEQRPALLRPGQGEEAQTKQEALFLNVSGQRLSRQGFWKIIK 233

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +  +  G+    T HTLRHSFA H+L  G DLRS+Q +LGH  L+TTQ+Y     +N   
Sbjct: 234 KYAQEAGISKDITPHTLRHSFAVHMLEGGADLRSVQEMLGHADLATTQVYAQTARRN--- 290

Query: 309 WMMEIYDQTHP 319
            M E+Y+  HP
Sbjct: 291 -MKEVYEMHHP 300


>gi|30021919|ref|NP_833550.1| site-specific tyrosine recombinase XerC [Bacillus cereus ATCC
           14579]
 gi|29897475|gb|AAP10751.1| Integrase/recombinase (XerC/CodV family) [Bacillus cereus ATCC
           14579]
          Length = 294

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 161/308 (52%), Gaps = 25/308 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R +++  
Sbjct: 3   QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYLTTL 57

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137
             +K+  +S+ R +S ++S  ++L  R+   + N   + +L KK  S+P+ L  ++    
Sbjct: 58  HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 113

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               L   S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG K 
Sbjct: 114 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 171

Query: 198 RIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           R +P     + +++ Y +      +   D + ++   +F   +G PL     +  + +L 
Sbjct: 172 RYIPFGSYAQDSLITYIENGRKQLVNKTDEDSHM---VFLNAKGTPLTSRGVRYVLNELI 228

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +   L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+     + + 
Sbjct: 229 KKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----ERLR 284

Query: 312 EIYDQTHP 319
            +Y + HP
Sbjct: 285 SVYMKHHP 292


>gi|313632584|gb|EFR99578.1| tyrosine recombinase XerD [Listeria seeligeri FSL N1-067]
 gi|313637133|gb|EFS02675.1| tyrosine recombinase XerD [Listeria seeligeri FSL S4-171]
          Length = 297

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/308 (30%), Positives = 161/308 (52%), Gaps = 27/308 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L +E+GLS  T+++YE D   F+ ++   T   +T      L  ++I  F++  R
Sbjct: 7   DFLHFLIVEKGLSANTIKAYERDLHYFVSYIN--TARPLTDPNT--LERSDIVGFMAFAR 62

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +    RS+ R ++ ++SF  YL      +   ++ +   K++  LP+ LN       +D
Sbjct: 63  KEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLN-------LD 115

Query: 140 NV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +V  LL +S  +  +  R+ A++ +LY  GLR++E + L   ++      ++  GKGDK 
Sbjct: 116 DVELLLSSSDTSTSLGLRDQAMMEILYATGLRVTELVQLKMDDLHLQMGFIQTIGKGDKE 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI------RGKPLNPGVFQRYIRQLR 251
           RI+PL  +    + +Y +    +    ++ P +R         G+ L    F + ++ + 
Sbjct: 176 RIIPLGKTATTVLEQYLE----EARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIA 231

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +  G+    T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT+V        + 
Sbjct: 232 KESGIEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLR----LK 287

Query: 312 EIYDQTHP 319
           ++Y Q HP
Sbjct: 288 DVYKQFHP 295


>gi|71905836|ref|YP_283423.1| tyrosine recombinase XerC subunit [Dechloromonas aromatica RCB]
 gi|71845457|gb|AAZ44953.1| tyrosine recombinase XerC subunit [Dechloromonas aromatica RCB]
          Length = 295

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 157/307 (51%), Gaps = 19/307 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            WL  L  +R LS  T+ +Y  D ++ L          I + +   L    +R F+++  
Sbjct: 6   TWLAELSDQRRLSAHTVSNYRRDLQKLLA-----AAGDIPLAS---LQVHHLRRFVAQLH 57

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q +  RSL R+LS  + F  +L +R +   +    +R  K    LP+AL+  +      
Sbjct: 58  GQGLAGRSLARALSAWRGFFHWLGERGMVKANPCDGIRPPKSPRMLPKALSVDE----TS 113

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKI 197
            +L+    +     AR+ A+  L Y  GLR++E ++L  + + D   +S +R+ GK +K+
Sbjct: 114 RLLMPVDDDDPVQAARDLAMFELFYSSGLRLAELVALDCEALDDIAHESEVRVLGKRNKL 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VP+  S  +  L  +     +L    +  LF G RG  ++P + +  + +    LGLP
Sbjct: 174 RLVPV-GSKAREALAAWAAVRNELAKPEEKALFVGQRGGRISPRMVEARLARRAVLLGLP 232

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRHSFA+H+L + GDLR++Q +LGH  +++TQ+YT+++ ++    + ++YD  
Sbjct: 233 THVHPHMLRHSFASHVLQSSGDLRAVQEMLGHASIASTQVYTHLDFQH----LAKVYDAA 288

Query: 318 HPSITQK 324
           HP    K
Sbjct: 289 HPRAKSK 295


>gi|328954140|ref|YP_004371474.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109]
 gi|328454464|gb|AEB10293.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109]
          Length = 310

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 162/306 (52%), Gaps = 22/306 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++ ++L IER L+  T+++Y  D  QF+ F  +    +    ++ +L+Y ++RAF+++R 
Sbjct: 19  DFSRHLRIERSLAAHTVRNYLSDIGQFMEFWNY----RRPGHSLGELTYQDLRAFLAERH 74

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  S+ R L+ +++F K+L ++ + + +        K    LP+ L   +   L++
Sbjct: 75  RLNC-KTSIARKLAALRTFCKFLTRQGLLSHNIAALTPTPKLEARLPKFLTIDEVFHLLE 133

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                T      +  R+ AIL L Y  GLR++E + L   N+   Q   +++GKG K R+
Sbjct: 134 QTWGQTV-----LAVRDRAILELFYSGGLRVAELVGLNLDNLDLPQHLAKVRGKGGKERL 188

Query: 200 VPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ--LRRY 253
           V +    L ++   +L   +L   D  ++ +  +F   RG  L      R + +  ++  
Sbjct: 189 VIIGRQALQTLNSYLLVRRELITPDSPVSGREAVFLNYRGGRLTSRSVARLVEKWAIKAG 248

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           LG PLS   H LRH+FATHLL    DLR++Q +LGH +LSTTQ Y +VN     D++ME+
Sbjct: 249 LGQPLS--PHGLRHTFATHLLEGKADLRAVQELLGHAQLSTTQKYLHVNL----DYLMEV 302

Query: 314 YDQTHP 319
           YD+ HP
Sbjct: 303 YDKAHP 308


>gi|149276499|ref|ZP_01882643.1| site-specific recombinase [Pedobacter sp. BAL39]
 gi|149233019|gb|EDM38394.1| site-specific recombinase [Pedobacter sp. BAL39]
          Length = 292

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 152/286 (53%), Gaps = 23/286 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L++ER LS  ++ +Y  D ++    L  Y +       I++++ ++++ FIS      + 
Sbjct: 7   LKLERALSVNSISAYISDVKK----LFEYFDSTGKSYDIQEVNTSDLKLFISWVNELGML 62

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +  R +SGIKS+  +L   ++ +     ++   + +  LP  LN ++      N ++ 
Sbjct: 63  PVTQARVISGIKSYFSFLSLEQLISSDPASSLETPRLNKKLPDTLNIEEI-----NAMIQ 117

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
               +K    R+ A+L +LYGCGLR+SE + +   NI  +   +++ GKGDK RI+P+  
Sbjct: 118 AIDHSKAEGLRSRAMLEVLYGCGLRVSELIQMKISNIFINSEFIKVVGKGDKERIIPIGS 177

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGI--------RGKPLNPGVFQRYIRQLRRYLGL 256
           +  K I+ Y +       + I++P+ +G         RG  L   +    I+ L +  G+
Sbjct: 178 AALKYIMMYIN------EVRIEVPIKKGQEDFVFLNRRGTALTRMLIFNMIKGLAKDAGI 231

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             + + HT RHSFATHL+  G DLR++Q +LGH  ++TT+IYT+++
Sbjct: 232 QKNISPHTFRHSFATHLIEGGADLRAVQEMLGHSSITTTEIYTHLD 277


>gi|70726420|ref|YP_253334.1| site-specific recombinase [Staphylococcus haemolyticus JCSC1435]
 gi|82582338|sp|Q4L6J7|XERD_STAHJ RecName: Full=Tyrosine recombinase xerD
 gi|68447144|dbj|BAE04728.1| site-specific recombinase [Staphylococcus haemolyticus JCSC1435]
          Length = 295

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 162/308 (52%), Gaps = 27/308 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ ++IE+GLS+ T+ +Y  D +++ +++    E+KI    I  +    I+  +   
Sbjct: 6   EEYLKFIQIEKGLSENTIGAYRRDLKKYQLYMQ---EQKIA--HIDFIDRQTIQECLGSL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q    +S+ R +S I+SF ++  + K   +   + +   K    LP  L+ ++ + L 
Sbjct: 61  IDQGASAKSIARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLDVEEVIQL- 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
               L T   TK    R+  IL LLY  G+R++E + +   ++      +++ GKG+K R
Sbjct: 120 ----LETPDLTKNNGYRDRTILELLYATGMRVTELIQIEIDDVNLIMGFVKVFGKGNKER 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL-------PLFRGIRGKPLNPGVFQRYIRQLR 251
           I+PL  +V    +EY D   +  N+  QL        LF  + G+PL      + I+Q  
Sbjct: 176 IIPLGDTV----IEYLD--TYINNVRSQLLKKTVTNVLFLNLHGRPLTRQGIWKLIKQYG 229

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               +  + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + 
Sbjct: 230 LRANINKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKTQ----IR 285

Query: 312 EIYDQTHP 319
           ++Y+Q HP
Sbjct: 286 QMYNQFHP 293


>gi|145590194|ref|YP_001156791.1| phage integrase family protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145048600|gb|ABP35227.1| tyrosine recombinase XerC subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 333

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 159/324 (49%), Gaps = 33/324 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L  L + R LS  TL++Y  D         F  E+ + +  +   S   +R +  + 
Sbjct: 13  QEYLHELHVLRQLSPHTLKAYGMDLSDLQ---NFALEDSVELLKV---SNGHVRRWAGRL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKR---------KITT---ESNILNMRNLKKSNSLP 126
            ++    RS+ R+LS  + +  +L ++         K+T     + + +++  K+  SLP
Sbjct: 67  HSKGKSSRSIARALSAWRGWYDWLTEKDARRDARAGKVTNNLIANPVDDVKAPKRLKSLP 126

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--- 183
           +AL+ +QAL LV+  +     +      R++AI+ LLY  GLR+SE L +      D   
Sbjct: 127 KALSVEQALALVNQAVKEAEEKKDLESIRDAAIIDLLYSSGLRLSELLGIDVMQSKDRQH 186

Query: 184 --------DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
                   D + + + GKG K R VP+     K++  + +L          + LF    G
Sbjct: 187 ESAGWLDWDAAEVTVLGKGGKRRSVPVGVPAMKSLAVWRELRDAGSYSEESIALFLSATG 246

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           K L+P   Q  +R L    GLP     H +RHSFA+H+L +  DLR++Q +LGH  +++T
Sbjct: 247 KRLSPRTVQARLRTLAMRAGLPTHVHPHMMRHSFASHVLQSSQDLRAVQEMLGHASIAST 306

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHP 319
           QIYT+++ ++    + + YD+ HP
Sbjct: 307 QIYTSLDFQH----LAQAYDKAHP 326


>gi|256820383|ref|YP_003141662.1| integrase family protein [Capnocytophaga ochracea DSM 7271]
 gi|256581966|gb|ACU93101.1| integrase family protein [Capnocytophaga ochracea DSM 7271]
          Length = 307

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 147/299 (49%), Gaps = 15/299 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L IE   S  T+++Y+ D R F  F+    EEK     + Q    +I+ +I     + I 
Sbjct: 10  LSIEMKYSDHTVEAYKHDLRSFEKFIKNLYEEKGEDCCLEQADQEDIKKWIIHLSDETIS 69

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITT----ESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            RS+ R LS +K++  +LKK K       E  I  ++  KK + LP +  E      ++ 
Sbjct: 70  FRSINRKLSALKTYYNFLKKTKQIEISPFEKGIFLLKTEKK-HKLPFSEAE------IEK 122

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           VL   S +  + + RN A++  LY  G+R SE   L   ++  +Q  +++ GKGDK R +
Sbjct: 123 VLSFFSSKDSFDEVRNRAVIETLYATGIRRSELSGLKVSDVDFEQKQIKVLGKGDKERYI 182

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P++P +   + EY  L     N   Q  LF    GK +   +  R I      +      
Sbjct: 183 PIIPELENTLKEYLVLREEVKNEKSQDYLFLVKNGKKIYSTLVYRIINSYFSVVTTKKDV 242

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           + H LRHSFA+HLL NG DL +++ +LGH  L++TQ+YTN +       + + Y + HP
Sbjct: 243 SPHVLRHSFASHLLDNGADLYTVKELLGHSSLASTQVYTNTSLAE----LKKQYKKAHP 297


>gi|228902334|ref|ZP_04066491.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 4222]
 gi|228966776|ref|ZP_04127820.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228792875|gb|EEM40433.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228857303|gb|EEN01806.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 4222]
          Length = 299

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 159/311 (51%), Gaps = 31/311 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R +++  
Sbjct: 8   QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYLTTL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137
             +K+  +S+ R +S ++S  ++L  R+   + N   + +L KK  S+P+ L  ++    
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               L   S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG K 
Sbjct: 119 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248
           R +P     + +++ Y +      N   QL          +F   +G PL     +  + 
Sbjct: 177 RYIPFGSYAQDSLITYIE------NGRKQLVNKTDEDSRMVFLNAKGTPLTSRGVRYVLN 230

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L +   L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+     +
Sbjct: 231 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 286

Query: 309 WMMEIYDQTHP 319
            +  +Y + HP
Sbjct: 287 RLRSVYMKHHP 297


>gi|134102479|ref|YP_001108140.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
 gi|133915102|emb|CAM05215.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
          Length = 325

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 148/317 (46%), Gaps = 13/317 (4%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           + LP  V   +      + ++L+ ERGLS  T+++Y  D    L       EE+   + +
Sbjct: 19  DGLPGPVGAAV----DGFERHLKAERGLSAHTVRAYIGDVVSLLDHFCAGDEER---KGL 71

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
             L  T +R +++ +        +L R  +  ++F  +  + ++        +       
Sbjct: 72  NGLGLTVLREWLAAQHADGASRSTLARRAASARTFTAWAHRAELLPHDPGPRLAAPAPKR 131

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            LP  L  +QA + + +     + +   I  R+ A++ LLY  G+R+SE   L   ++  
Sbjct: 132 KLPTVLRAEQAKSAM-SASQAGAEQGDPIALRDHAVVELLYATGVRVSELCGLDLDDVDH 190

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGV 242
           ++  +R+ GKGDK R VP       A+  +      +L  +   P LF G RG  L+P  
Sbjct: 191 ERRVVRVIGKGDKERAVPFGVPAEDAVSRWISAGRPELATDASGPALFLGARGGRLDPRA 250

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +R +      +        H LRHS ATHLL  G DLRS+Q +LGH  L+TTQ+YT+V 
Sbjct: 251 VRRVVHDAVGAVSGATDVGPHGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTHVT 310

Query: 303 SKNGGDWMMEIYDQTHP 319
            +     +  I+D+THP
Sbjct: 311 VER----LKAIHDRTHP 323


>gi|229820995|ref|YP_002882521.1| integrase family protein [Beutenbergia cavernae DSM 12333]
 gi|229566908|gb|ACQ80759.1| integrase family protein [Beutenbergia cavernae DSM 12333]
          Length = 380

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 147/310 (47%), Gaps = 16/310 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +  +LE +RGLS  T+++Y  D    L  L    +E       R L    +R +++++
Sbjct: 76  ERYALHLEAQRGLSAHTVRAYTSDVADLLAELPPTGDEPNGADLTR-LDLVALRRWLARQ 134

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +   +L R  +  ++F  +  +  +  E     +R+ +    +P  L E  A T++
Sbjct: 135 ARAGLARSTLARRSASARTFTAWAHRAGLLAEDVGARLRSPRADVVVPVVLTEADAATVL 194

Query: 139 DNV--------LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           D V              E   +  R+SA+L LLYG  LR+SE   L   ++   +  +R+
Sbjct: 195 DGVRADDGGVGADDDEGERSALALRDSAMLELLYGAALRVSELAGLDTGDVDLRERLVRV 254

Query: 191 QGKGDKIRIVPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
            GKG K R+VP  LP+ R AI  +  + P          LF G RG  ++P V +  + +
Sbjct: 255 LGKGAKERVVPFGLPAAR-AIEAWISVRPELAGPRSGRALFLGARGGRIDPRVVRDVVHR 313

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+      H LRHS ATHLL+ G DLRS+Q ILGH  L+TTQ YT+V  +     
Sbjct: 314 ATARAGV-RDLAPHGLRHSAATHLLAGGSDLRSVQEILGHASLATTQRYTHVTPER---- 368

Query: 310 MMEIYDQTHP 319
           +   + Q HP
Sbjct: 369 LRAAFRQAHP 378


>gi|303232711|ref|ZP_07319396.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae
           PB189-T1-4]
 gi|302481197|gb|EFL44272.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae
           PB189-T1-4]
          Length = 324

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/301 (31%), Positives = 149/301 (49%), Gaps = 27/301 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+ +  ER  S  TL++Y  D   +  FL   T++ I   T   ++   +  ++S   
Sbjct: 9   EYLRYIRFERNFSANTLEAYARDLNAYCEFL---TDKHI--DTPVHITRRVVEEYLSYVA 63

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           T      S++R +S IKSF +++   +I T     ++   KK   LP+ L+  +   L+D
Sbjct: 64  TLDKAPSSVQRCVSAIKSFHRFMVIEQICTAHPTADIALPKKPALLPQVLSHTEVERLLD 123

Query: 140 NVLLH----TSHETK------------WIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
              L      +H TK            W   R+ AIL LLYGCGLR+SE  +LT  N+  
Sbjct: 124 EPFLQELQPAAHTTKQGTTTMTKAACFW---RDKAILELLYGCGLRVSELCNLTCDNVSR 180

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPG 241
               LR+ GKG K R+VPL+ S   A   Y D    +L         +F  +RG  ++  
Sbjct: 181 TDEVLRVIGKGSKERVVPLIGSALAAYTRYVDTWRAELYNPRRSNHAVFLSVRGSAISRQ 240

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                + +  R +G+      HTLRH++ATHLL  G DLR +Q +LGH  ++TTQ+YT++
Sbjct: 241 AVFALVEKYGRMVGI-RGLHPHTLRHTYATHLLEGGMDLRIVQELLGHASIATTQLYTHI 299

Query: 302 N 302
           +
Sbjct: 300 D 300


>gi|270308039|ref|YP_003330097.1| site-specific recombinase [Dehalococcoides sp. VS]
 gi|270153931|gb|ACZ61769.1| site-specific recombinase [Dehalococcoides sp. VS]
          Length = 307

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/310 (31%), Positives = 155/310 (50%), Gaps = 35/310 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L +E+ +S  TL++Y  D    + F+ +  E+K++  +  ++    +R ++S    
Sbjct: 8   YLEYLSVEKNVSAYTLRNYRTD---LIGFVNYLIEKKVS--SFDRVDRYILRDYMSSLIA 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + I   S+ R LS ++SF +YL +  +  ++  LN  + +    LP  L   +      +
Sbjct: 63  KGIVKGSIARKLSAVRSFYRYLMREGLIQKNPTLNASSPRLDKRLPEFLTTAEV-----S 117

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL     +     R+ A + LLY  GLR+SE + L  +N+      +R+ GKG K RIV
Sbjct: 118 KLLRMPDSSTPQGLRDKAFMELLYASGLRVSELVKLDIENLDLHSHQIRVWGKGSKERIV 177

Query: 201 PL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---LNPG-------VFQRYIRQ 249
            + LP++ ++I  Y         LN+  PL +G R  P   LNP         FQ  + +
Sbjct: 178 LMGLPAI-QSIQTY---------LNLGRPLLKGKRNTPALFLNPNGGRLSARSFQERLDK 227

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           L    G+      H LRH+FATHLL  G DLR +Q +LGH  LSTTQIYT+V        
Sbjct: 228 LAHQAGIEKHVHPHMLRHTFATHLLDGGADLRVVQELLGHSNLSTTQIYTHVTKSQA--- 284

Query: 310 MMEIYDQTHP 319
             ++Y  +HP
Sbjct: 285 -RKVYMSSHP 293


>gi|289624627|ref|ZP_06457581.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289651147|ref|ZP_06482490.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298489345|ref|ZP_07007359.1| Tyrosine recombinase xerC [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298156136|gb|EFH97242.1| Tyrosine recombinase xerC [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 299

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 151/306 (49%), Gaps = 21/306 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +  +L  ER +S  TL++Y  D  + L +      +K  + +   L    +R+F +++  
Sbjct: 8   YCMHLRSERQVSPHTLEAYRRDLGKVLAYC-----QKAQLSSWNDLDIQHLRSFTARQHQ 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q    RSL R LS ++ F KYL +  I        +   K    LP+ L+  +   L+D 
Sbjct: 63  QGQSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDG 122

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +     E  ++  R+ AIL LLY  GLR+SE   L    +      +++ GKG K R++
Sbjct: 123 GV-----EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVL 177

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPL 258
           P+    R+A LE +   P     N Q   +F   +GK L P   Q  ++    R LG  L
Sbjct: 178 PVGSKARQA-LEIW--LPLRALTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNL 234

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +YD  H
Sbjct: 235 HP--HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAH 288

Query: 319 PSITQK 324
           P   +K
Sbjct: 289 PRAKRK 294


>gi|167717571|ref|ZP_02400807.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           DM98]
          Length = 244

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 134/253 (52%), Gaps = 25/253 (9%)

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           RS+   LS  ++F ++  +      + +  +R  K++ +LP+AL+      L+D     T
Sbjct: 4   RSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDTAALMDAPTAGT 63

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTLRIQGKG 194
           +        R+ AIL L Y  GLR++E + L  + + D            ++ + ++GKG
Sbjct: 64  AESL-----RDHAILELFYSSGLRLAELIGLDIEYVKDGAYRSAGWLDLAEAEVTVRGKG 118

Query: 195 DKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           DK R VP+    RKA+  L  +     +   +   PLF  +RG  ++PGV +  +++   
Sbjct: 119 DKERKVPV---GRKALDALHAWLAVRGEFVKHDPRPLFLSVRGNRMSPGVVRERVKRAAL 175

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+P +   H LRHSFATH+L + GDLR++Q +LGH  +S TQ+YT+++ ++    + +
Sbjct: 176 AAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQH----LAK 231

Query: 313 IYDQTHPSITQKD 325
           IYD  HP   ++D
Sbjct: 232 IYDSAHPRAKKRD 244


>gi|167756958|ref|ZP_02429085.1| hypothetical protein CLORAM_02507 [Clostridium ramosum DSM 1402]
 gi|167703133|gb|EDS17712.1| hypothetical protein CLORAM_02507 [Clostridium ramosum DSM 1402]
          Length = 312

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 166/318 (52%), Gaps = 15/318 (4%)

Query: 9   IVSFELLKER-QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           +  F L+K+    + Q L +E+GLSK T+ SY  D    LI  + +  E+  I  I  ++
Sbjct: 7   LAKFMLIKDALSEYKQYLIVEKGLSKNTIYSYLRD----LIAFSNFIGEEYEINQIENIN 62

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
              I  ++ K  ++     S+ R L  ++    +L K  I  E+ + +    K+   LP 
Sbjct: 63  KEHIHLYL-KELSKTNCTNSISRKLVSLRMLYIFLVKENIVKENLMSSFTLPKRDKKLPI 121

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L++++ + ++D +++        I +RN  ++ LLY  G+RISE L+LT +++      
Sbjct: 122 VLSQEEMIEILDGIIV-----CDAISSRNRCMVELLYATGMRISELLNLTLKDLNIKMGF 176

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           +++ GKG+K R++P+   V + + +Y +    + N+     LF    G+ L+   F   +
Sbjct: 177 IKVIGKGNKERMIPIGSYVGEILEQYINDYRAEFNIKNDSLLFFNKHGQRLSREEFYSIL 236

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           + +     +    + HT RH+FATHLL NG DLRSIQ +LGH  +STT IYT+++++   
Sbjct: 237 QTIVNSTSITKKVSPHTFRHTFATHLLENGADLRSIQELLGHSDISTTTIYTHISNQK-- 294

Query: 308 DWMMEIYDQTHPSITQKD 325
             +   Y Q HP I + +
Sbjct: 295 --IRSEYQQFHPRIKKHN 310


>gi|86133541|ref|ZP_01052123.1| phage integrase family protein [Polaribacter sp. MED152]
 gi|85820404|gb|EAQ41551.1| phage integrase family protein [Polaribacter sp. MED152]
          Length = 298

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 155/306 (50%), Gaps = 34/306 (11%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEE----KITIQTIRQLSYTEIRAFISKRRT 80
           L+IERGLS+ T+ SY  D  +   FL     E    KI  + ++Q  Y   +        
Sbjct: 14  LKIERGLSQNTIDSYTRDLNKLTQFLNVNDIEISPIKIDKEIVQQFIYDVAKG------- 66

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK-SNSLPRALNEKQALTLVD 139
             +  RS  R +SG++SF  YL       E+N  ++    K    LP  L+E +  +L+ 
Sbjct: 67  --VNPRSQARIISGLRSFFDYLVFEDFR-ETNPTDLIEAPKIGRKLPDTLSEDEINSLIQ 123

Query: 140 NV-LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           ++ L H   E      RN  IL  LY CGLR+SE ++L   ++  D+  +++ GKG+K R
Sbjct: 124 SIDLSHPQGE------RNRTILETLYSCGLRVSELITLKISDLYFDEGFIKVTGKGNKER 177

Query: 199 IVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            VP+  + +K I  Y       + P     + +  LF   RGK L   +    ++ L   
Sbjct: 178 FVPIHYNAQKYITTYIHQIRNQVKPVK---SFEDTLFLNRRGKGLTRQMIFTILKDLAIK 234

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           + L    + HTLRHSFATHLL NG DLR+IQ +LGH  ++TT++Y ++++     ++ EI
Sbjct: 235 IDLNKKISPHTLRHSFATHLLKNGADLRAIQQMLGHESITTTEVYVHLDNS----YLKEI 290

Query: 314 YDQTHP 319
            +  HP
Sbjct: 291 VETYHP 296


>gi|325268524|ref|ZP_08135154.1| integrase/recombinase XerD [Prevotella multiformis DSM 16608]
 gi|324989052|gb|EGC21005.1| integrase/recombinase XerD [Prevotella multiformis DSM 16608]
          Length = 310

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/284 (32%), Positives = 145/284 (51%), Gaps = 20/284 (7%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L++E+G S  T+ +Y  D  + L +LA   +  +T  T+ QL +     F +      IG
Sbjct: 18  LKLEKGCSPNTVDAYLHDVDKLLRYLAG-EQVPVTDVTLEQLEH-----FAASVSDLGIG 71

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            RSL R LSG++ F ++L             + + K+ + LP  L+  +   L   V L 
Sbjct: 72  ARSLARILSGVRQFYRFLVLDGYMEADPTELLESPKQPDHLPEVLSTAEVDLLEQAVDL- 130

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
               TKW   RN AI+ +L+ CGLR+SE   L   ++  ++  +R+ GKG K R+VP+ P
Sbjct: 131 ----TKWEGHRNRAIIEVLFSCGLRVSELTHLKLSDLYREEQYVRVMGKGSKERLVPISP 186

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
                 L+  D    D N+    P     +F   RG  L   +    I++     G+  +
Sbjct: 187 RA----LDELDCWFADRNVMKIKPGEEDYVFLNRRGHHLTRTMILIMIKRYAAEAGIRKT 242

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            + HTLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++
Sbjct: 243 ISPHTLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDT 286


>gi|299822639|ref|ZP_07054525.1| tyrosine recombinase XerC [Listeria grayi DSM 20601]
 gi|299816168|gb|EFI83406.1| tyrosine recombinase XerC [Listeria grayi DSM 20601]
          Length = 304

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/319 (30%), Positives = 158/319 (49%), Gaps = 46/319 (14%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q++L  LE ER  S  T+ +Y+ D   F  FL    +E+I I+++  + Y E+R ++++ 
Sbjct: 12  QSFLTYLEKERNYSAYTVAAYKQDIHDFQTFL----KEEI-IESLTDVRYLEVRVYLTRL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R ++    ++ R LS ++SF  +L + +   E+    + + K    LP+    ++   L 
Sbjct: 67  REKEYSRSTVSRKLSSLRSFYTFLLRDQQIAENPFSYVSHSKNHLRLPKFFYSEEMEALF 126

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             V      + K +  RN A+L +LYG G+R+SE   +   +I     ++ I+GKG+K R
Sbjct: 127 TVVY----QDDKLLTLRNRALLEILYGTGIRVSECADIRLADIDATYQSILIRGKGNKER 182

Query: 199 IVPL-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
            VP            L + RKA++E Y              LF    G PL P       
Sbjct: 183 YVPFGAYAEDAVQLYLEASRKALMEKYH--------KEHDYLFVNHYGDPLTP------- 227

Query: 248 RQLRRYLGLPLSTTA-------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           R +R  L   + + A       H LRH+FAT LL+NG D+R++Q +LGH  LS+TQIYT+
Sbjct: 228 RGIRYCLSKTIESAAMTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTH 287

Query: 301 VNSKNGGDWMMEIYDQTHP 319
           V  ++    +   Y + HP
Sbjct: 288 VTKEH----LKATYMKFHP 302


>gi|193222420|emb|CAL63069.2| Tyrosine recombinase xerC [Herminiimonas arsenicoxydans]
          Length = 318

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 154/320 (48%), Gaps = 29/320 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L NL  +R LS LT+ SY  D  + L               +  +S+ +IR F ++  
Sbjct: 12  GYLDNLISQRQLSPLTITSYRRDLLELLALATASDGNA----ALSAISHFQIRKFAAQLH 67

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +  RS+ R LS  + F  +L ++     + +  ++  K++  LP+AL    A+ LV 
Sbjct: 68  AKGLNARSIARKLSAWRGFFTWLSEQNAVASNPVDGIKAPKRNKPLPKALAADDAVRLVS 127

Query: 140 NVLLHTSHETKWIDAR----NSAILYLLYGCGLRISEALSL----------TPQNIMD-D 184
                ++   K  DA     N A+  LLY  GLR SE + L          T    +D D
Sbjct: 128 -----SNSPGKNADATMQLCNRAMFELLYSSGLRASELVGLDLKYAQENRYTSAGWIDFD 182

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                + GKG K+R  P+      A+  +  +    L L+   PLF   RG  ++  V Q
Sbjct: 183 AHEAMVTGKGSKMRSAPIGQPAIDALKAWLAVRDTLLKLDPH-PLFLSERGTRISARVLQ 241

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             ++   + +GLP+    H LRHSFA+H+L + GDLR++Q +LGH  +S TQIYT+++ +
Sbjct: 242 LRLKAHAQAVGLPMDVHPHVLRHSFASHVLQSSGDLRAVQEMLGHASISATQIYTSLDFQ 301

Query: 305 NGGDWMMEIYDQTHPSITQK 324
                + ++YD  HP   +K
Sbjct: 302 R----LAQVYDAAHPRAKKK 317


>gi|312130041|ref|YP_003997381.1| integrase family protein [Leadbetterella byssophila DSM 17132]
 gi|311906587|gb|ADQ17028.1| integrase family protein [Leadbetterella byssophila DSM 17132]
          Length = 282

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 158/299 (52%), Gaps = 23/299 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L+ ER LS  T++SY+ D  Q   FL              Q+S  ++RA++     
Sbjct: 5   FLSHLQHERRLSPHTIKSYKLDLEQLHTFLNGIDPS--------QISTEDLRAWVVSLSE 56

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             + +RS+ R L+  ++F  +L+++KI +++    +++LK    LP  L E+    L + 
Sbjct: 57  DGLENRSINRKLASARAFFTFLQRKKIISQNPADLIKSLKTPKPLPVFLEERNTQDLFEQ 116

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +      E      R+  +L LLYG G+R+SE +S+  +++ +D+  +++ GK  K RI+
Sbjct: 117 LEFTEDFE----GLRDKLLLELLYGTGIRLSELISIQVKDLENDR--VKVLGKRSKYRII 170

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           PL  +++  I  Y +L P +        L    +G+ L P   QR ++   + +     T
Sbjct: 171 PLHRTLQDLIKRYLELHPKN-----DTHLLLTDKGEALYPVFVQRKVKHYLQQISTLTKT 225

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           + H LRH+FATHLL+ G DL +I+ +LGH  LS TQIYT+    N    + E++ + HP
Sbjct: 226 SPHVLRHTFATHLLNRGADLNAIKELLGHANLSATQIYTH----NSIQKLKEVFQKAHP 280


>gi|113461442|ref|YP_719511.1| site-specific tyrosine recombinase XerC [Haemophilus somnus 129PT]
 gi|112823485|gb|ABI25574.1| tyrosine recombinase XerC subunit [Haemophilus somnus 129PT]
          Length = 291

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/310 (31%), Positives = 163/310 (52%), Gaps = 25/310 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +   L IER LS  TL +Y+    + ++ L     ++  IQ+ +Q++ + +R  +++ 
Sbjct: 2   QKYYNYLRIERQLSPYTLINYQRQLEKIVVIL-----QQNDIQSWQQVTPSVVRFVLAQS 56

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R + + +RSL   LS ++ FL YL  +     ++ + +   K+S  LP+ ++ +Q    V
Sbjct: 57  RKEGLHERSLALRLSALRQFLNYLVVQGELKVNSAVGISAPKQSKYLPKNMDMEQ----V 112

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             +L + S E   ID R+ A++ L+Y  GLR+SE  SL   +I      +R+ GKG+K R
Sbjct: 113 QQLLTNESKEP--IDLRDKAMMELMYSSGLRLSELQSLNLNSINIRSREVRVIGKGNKER 170

Query: 199 IVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           I+P      +AI ++  +     P D        LF    G  ++    Q+ +       
Sbjct: 171 ILPFGRYASQAIQQWLKVRLLFNPKDE------ALFVSQLGNRISHRSIQKRMETWGIRQ 224

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           GL      H LRHSFATH+L N  DLR++Q +LGH  LSTTQIYT+++ ++    + ++Y
Sbjct: 225 GLNGHLNPHKLRHSFATHMLENSSDLRAVQELLGHSNLSTTQIYTHLDFQH----LAQVY 280

Query: 315 DQTHPSITQK 324
           D+ HP   +K
Sbjct: 281 DKAHPRAKRK 290


>gi|218898984|ref|YP_002447395.1| tyrosine recombinase XerC [Bacillus cereus G9842]
 gi|228909656|ref|ZP_04073479.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 200]
 gi|228940919|ref|ZP_04103478.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228973848|ref|ZP_04134424.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980438|ref|ZP_04140748.1| Tyrosine recombinase xerC [Bacillus thuringiensis Bt407]
 gi|218544580|gb|ACK96974.1| tyrosine recombinase XerC [Bacillus cereus G9842]
 gi|228779258|gb|EEM27515.1| Tyrosine recombinase xerC [Bacillus thuringiensis Bt407]
 gi|228785873|gb|EEM33876.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818755|gb|EEM64821.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228849945|gb|EEM94776.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 200]
 gi|326941600|gb|AEA17496.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 299

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 159/311 (51%), Gaps = 31/311 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R +++  
Sbjct: 8   QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYLTTL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137
             +K+  +S+ R +S ++S  ++L  R+   + N   + +L KK  S+P+ L  ++    
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               L   S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG K 
Sbjct: 119 --EELFEVSDTGTPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248
           R +P     + +++ Y +      N   QL          +F   +G PL     +  + 
Sbjct: 177 RYIPFGSYAQDSLITYIE------NGRKQLVNKTDEDSRMVFLNAKGTPLTSRGVRYVLN 230

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L +   L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+     +
Sbjct: 231 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 286

Query: 309 WMMEIYDQTHP 319
            +  +Y + HP
Sbjct: 287 RLRSVYMKHHP 297


>gi|296268973|ref|YP_003651605.1| integrase family protein [Thermobispora bispora DSM 43833]
 gi|296091760|gb|ADG87712.1| integrase family protein [Thermobispora bispora DSM 43833]
          Length = 292

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 149/301 (49%), Gaps = 25/301 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +ER LS  T+++Y  D       L     E+I      +L  T++RA++ ++    + 
Sbjct: 9   LRLERDLSPHTVRAYLGDVASLFAHLRATGRERIA-----ELDITDLRAWLGEQHRAGLS 63

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +L R ++  ++F  +  +R          +   K    LP  L ++QA   +   +  
Sbjct: 64  RTTLARRIACARTFTAFCHRRGWLAHDPGPLLGTTKAERRLPAVLTQEQAQAALSPPV-- 121

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            S + K  + R+ AI+ LLY  G+R+SE  +L   ++  +++T+R+ GKG K R VP   
Sbjct: 122 -SGDPK--ELRDHAIMELLYATGIRVSELCALDLGDVDRERNTIRVMGKGRKERTVPFGQ 178

Query: 205 SVRKAILEYYDLC----PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
              +A+  +   C    P  +       LF G+RG  ++PG  +R +    R  G+P + 
Sbjct: 179 PAARALDAW---CVRGRPQWVRDGTPPALFLGVRGGRIDPGTVRRVVHA--RLAGVPGAP 233

Query: 261 T--AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H +RH+ ATHLL  G DLRS+Q ILGH  L+TTQ+YT+V+ +     +   Y Q H
Sbjct: 234 GMGPHGIRHTMATHLLEGGADLRSVQEILGHASLATTQLYTHVSIER----LRAAYRQAH 289

Query: 319 P 319
           P
Sbjct: 290 P 290


>gi|169827277|ref|YP_001697435.1| tyrosine recombinase xerD [Lysinibacillus sphaericus C3-41]
 gi|168991765|gb|ACA39305.1| Tyrosine recombinase xerD [Lysinibacillus sphaericus C3-41]
          Length = 300

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/309 (31%), Positives = 152/309 (49%), Gaps = 27/309 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  +++ER LS  TL SY  D   ++ FL    +    +     +  T I   + + 
Sbjct: 9   EDYIHFIQVERQLSVNTLASYRRDLESYVNFL----QNAEGMANFNHIERTTILRHLEQL 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R Q    R++ R +S I+SF ++L + K       +++        LP  L+ ++     
Sbjct: 65  RVQGKTSRTIARHISSIRSFHQFLLREKRAESDPTVHLEMPTIEQKLPNILSIEEI---- 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL   + +K    R+ A+L LLYG G+RISE ++L   ++      +R+ GKG K R
Sbjct: 121 -EALLTAPNRSKPQGIRDLAMLELLYGSGMRISELIALDLADLHLTMGFVRVFGKGGKER 179

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL--------PLFRGIRGKPLNPGVFQRYIRQL 250
           I+PL  S   AI  Y +      N   QL          F   RGK L      + +++ 
Sbjct: 180 IIPLGKSALSAISTYLN------NARGQLQGKYPKTDAFFINQRGKRLTRQGCWKLMKEH 233

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+    T HTLRHSFATHL+ NG DLR++Q +LGH  +STTQIYT+++       +
Sbjct: 234 ALKAGIQHELTPHTLRHSFATHLVENGADLRAVQEMLGHADISTTQIYTHISKTR----L 289

Query: 311 MEIYDQTHP 319
            E+Y Q HP
Sbjct: 290 SEVYKQFHP 298


>gi|332704140|ref|ZP_08424228.1| Tyrosine recombinase xerC [Desulfovibrio africanus str. Walvis Bay]
 gi|332554289|gb|EGJ51333.1| Tyrosine recombinase xerC [Desulfovibrio africanus str. Walvis Bay]
          Length = 322

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 158/307 (51%), Gaps = 16/307 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L++L + +GLS+ +L +Y  D   F   L F TE+ + ++  R    T +   +  RR 
Sbjct: 21  YLEHLLVSKGLSENSLTAYATD---FESLLEFLTEKALPME--RVTPQTLLLYLLHLRR- 74

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +G+RS+ R LS ++ F  +  +     E+    + N K   +LP  L+ ++    V+ 
Sbjct: 75  KGLGNRSMARHLSALRGFFAFALEEGWLVENPAELLENPKLPQTLPEVLSREE----VER 130

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +L      TK +  R+ A+L LLY  GLR+SE + L P +       LR+ GKG K R+V
Sbjct: 131 MLERPDTRTK-LGFRDRAMLELLYAAGLRVSELVDLRPLDFDPQTGVLRVFGKGSKERLV 189

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           PL    ++ +L Y +         ++  +F    GK L      + I++     G+    
Sbjct: 190 PLHDLAQRFVLAYLESWRNSFK-PLEEHMFLNRSGKGLTRQAIWKLIKRYALEAGIFREI 248

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + HT+RHSFATHLL  G DLR++Q +LGH  +S T+IYT++ +      ++ ++ + HP 
Sbjct: 249 SPHTMRHSFATHLLEGGADLRTVQILLGHADISATEIYTHLQTSR----LLAVHREHHPR 304

Query: 321 ITQKDKK 327
             +K  +
Sbjct: 305 SARKSGR 311


>gi|332666489|ref|YP_004449277.1| Tyrosine recombinase xerC [Haliscomenobacter hydrossis DSM 1100]
 gi|332335303|gb|AEE52404.1| Tyrosine recombinase xerC [Haliscomenobacter hydrossis DSM 1100]
          Length = 297

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 154/303 (50%), Gaps = 16/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA--FYTEEKITIQTIRQLSYTEIRAFIS 76
           + +L+ L+ E+  S  T+++Y+ D  QF  +L   +   E  TIQ I       IR++  
Sbjct: 4   EKFLRYLQYEKRFSVHTIEAYQSDLVQFSTYLQSQYEIAEPTTIQHI------HIRSWAV 57

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               QK    +++R LS +KS+ +YL++ KI + S +L +   K    LP  + EK    
Sbjct: 58  SLMEQKNAATTIRRKLSTLKSYFRYLQREKIISRSPMLQVSLPKLGKRLPVVVPEKSLDK 117

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+D V       T +   R+  ++ LLY  G+R +E LSL   ++     T+++ GKG+K
Sbjct: 118 LLDPV----ETPTDYTGLRDQVVIELLYLTGMRRAELLSLKVSDLNLHTHTIKVLGKGNK 173

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R++P+  +    +  Y +        ++Q  LF   RG+P  P +  R +      +  
Sbjct: 174 ERLIPMGHATVGLLKLYLETRRETFPDSMQTALFLTDRGEPAYPKLIYRIVNGYLSTVTT 233

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRHSFATHL  +G +L +I+ +LGH  L+ TQIYT+    +  + + +IY Q
Sbjct: 234 QEKRSPHVLRHSFATHLSDHGANLNAIKELLGHSSLAATQIYTH----HSIERLKKIYQQ 289

Query: 317 THP 319
            HP
Sbjct: 290 AHP 292


>gi|331012748|gb|EGH92804.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 299

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 151/306 (49%), Gaps = 21/306 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +  +L  ER +S  TL++Y  D  + L +      +K  + +   L    +R+F +++  
Sbjct: 8   YCMHLRSERQVSPHTLEAYRRDLGKVLAYC-----QKAQLSSWNDLDIQHLRSFTARQHQ 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q    RSL R LS ++ F KYL +  I        +   K    LP+ L+  +   L+D 
Sbjct: 63  QGQSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGDRRLPKTLDTDRTAQLLDG 122

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +     E  ++  R+ AIL LLY  GLR+SE   L    +      +++ GKG K R++
Sbjct: 123 GV-----EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVL 177

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPL 258
           P+    R+A LE +   P     N Q   +F   +GK L P   Q  ++    R LG  L
Sbjct: 178 PVGSKARQA-LEIW--LPLRALTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNL 234

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +YD  H
Sbjct: 235 HP--HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAH 288

Query: 319 PSITQK 324
           P   +K
Sbjct: 289 PRAKRK 294


>gi|228960047|ref|ZP_04121711.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228799563|gb|EEM46516.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 299

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 161/308 (52%), Gaps = 25/308 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R +++  
Sbjct: 8   QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYLTTL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137
             +K+  +S+ R +S ++S  ++L  R+   + N   + +L KK  S+P+ L  ++    
Sbjct: 63  YDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               L   S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG K 
Sbjct: 119 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176

Query: 198 RIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           R +P     + +++ Y +      +   D + ++   +F   +G PL     +  + +L 
Sbjct: 177 RYIPFGSYAQDSLITYIENGRKQLVNKTDEDSHM---VFLNAKGTPLTSRGVRYVLNELI 233

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +   L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+     + + 
Sbjct: 234 KKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----ERLR 289

Query: 312 EIYDQTHP 319
            +Y + HP
Sbjct: 290 SVYMKHHP 297


>gi|121595977|ref|YP_987873.1| tyrosine recombinase XerC [Acidovorax sp. JS42]
 gi|120608057|gb|ABM43797.1| tyrosine recombinase XerC [Acidovorax sp. JS42]
          Length = 323

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 158/336 (47%), Gaps = 30/336 (8%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N  P  V+  L  E   +L+++ +E+ L+  TL  Y  D ++     A      + +  +
Sbjct: 2   NGTP--VALHLPPEALQYLEHVRVEKRLAARTLTLYTLDLQRLAAMAA-----GVDLPLL 54

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           R L+   IR F+++        R +   LSG + F  +  ++ +   + + ++R  K   
Sbjct: 55  R-LTSAHIRRFVAQMHAGGRSGRGIALILSGWRGFYTWAARQGLVPHNPVQDVRAPKAPK 113

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNI 181
            LP+AL   +A+ L ++     +    W++ R++AI+ LLYGCGLR+ E   L + P   
Sbjct: 114 PLPKALPVDEAVRLAEH---QETGADPWLETRDAAIVELLYGCGLRVGELVGLDVAPSPA 170

Query: 182 MDDQS---------TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLP 228
              Q             + GKG K R VP+      +++  + +            ++  
Sbjct: 171 AHQQGRGWVDLQAGEAHVFGKGSKRRSVPVGRAAAAALQAWLAQRALPLGAAGAARLEPA 230

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LF G RG  L        +RQ  +  GL      H LRHSFA+HLL + GDLR++Q +LG
Sbjct: 231 LFIGRRGARLTAQSVWSRLRQRSQVAGLTTPVHPHMLRHSFASHLLQSSGDLRAVQELLG 290

Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           H  ++TTQ+YT ++ ++    +  +YD  HP   +K
Sbjct: 291 HANITTTQVYTRLDFQH----LARVYDAAHPRARRK 322


>gi|147677583|ref|YP_001211798.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
 gi|189030080|sp|A5D2W6|XERC_PELTS RecName: Full=Tyrosine recombinase xerC
 gi|146273680|dbj|BAF59429.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
          Length = 306

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/306 (31%), Positives = 157/306 (51%), Gaps = 16/306 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N+L  L +E+  S  T +SY+ D    L + A    ++        + +   R +++  +
Sbjct: 7   NFLVYLRVEKNASPRTTESYQKDLFHGLDYFASRLGKEDHAIVPSDIDHRIFRHYLAHMQ 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q +   ++ R L+  +SF +YL + KI   + +L + + K    LPR L E +A  LV+
Sbjct: 67  KQGLARATMARRLAAWRSFYRYLYREKIIDGNPLLRVASPKLEKRLPRFLYEDEAKELVE 126

Query: 140 NVLLHTSHETKW-IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                 + +TK  +  R+ A+L  LY  GLRISE + L   ++      +R+ GK  + R
Sbjct: 127 ------APDTKQPLGMRDRALLETLYAGGLRISELVLLDLGDLDISSGYIRVTGKRARER 180

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLN-----IQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +VPL     +A+  Y       L  N     I   LF   RG+ L+    ++ + +    
Sbjct: 181 LVPLGSMAVEALQAYLAKARPRLMANSVAKKINNALFLNCRGERLSARGIRKILDKYVEK 240

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           + L    + HTLRHSFATHLL+ G DLRS+Q ++GH RLS+TQ+YT+V     G+ + ++
Sbjct: 241 VSLERKISPHTLRHSFATHLLNAGADLRSVQELMGHVRLSSTQVYTHVT----GERLKKV 296

Query: 314 YDQTHP 319
           Y ++HP
Sbjct: 297 YRKSHP 302


>gi|291301889|ref|YP_003513167.1| tyrosine recombinase XerD [Stackebrandtia nassauensis DSM 44728]
 gi|290571109|gb|ADD44074.1| tyrosine recombinase XerD [Stackebrandtia nassauensis DSM 44728]
          Length = 301

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 157/308 (50%), Gaps = 23/308 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK- 77
           +++L ++ +ERG S  T+ +Y  D  ++L +L+     +  +  + Q++  +I  ++++ 
Sbjct: 7   RDYLDHVTVERGHSANTIAAYRRDLGRYLDWLS-----ETGLDALSQVTAADIGGYLARL 61

Query: 78  ----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
                    +  RS+ R+ S ++   ++     +T       +   K +  LP+A+   +
Sbjct: 62  SQGDDEHPGLSARSIARATSALRGLHRFALDEGVTDTDPTQALSTPKPALRLPKAIGVDE 121

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++   +   + T     R++A++  LYG G R+SE +     ++  D + +R++GK
Sbjct: 122 VARLLEAAAI-LDNPTGL---RDTALVEFLYGTGARVSETIGADIDDLDFDAAAVRLRGK 177

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLN-PGVFQRYIRQLR 251
           G K+R+VPL     +A+  Y  L     +     P LF   RGKPL   GVF   +R L 
Sbjct: 178 GGKVRVVPLGGYAVRALENY--LTRARPSWTPGHPKLFVNSRGKPLTRQGVFF-ILRGLA 234

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+ +    HTLRHSFATHLL  G D+R +Q +LGH  +STTQIYT V      D + 
Sbjct: 235 DRAGMAVDLGPHTLRHSFATHLLDGGADIRVVQELLGHAAVSTTQIYTLVTV----DKLR 290

Query: 312 EIYDQTHP 319
           E+Y  +HP
Sbjct: 291 EVYATSHP 298


>gi|254513968|ref|ZP_05126029.1| tyrosine recombinase XerD [gamma proteobacterium NOR5-3]
 gi|219676211|gb|EED32576.1| tyrosine recombinase XerD [gamma proteobacterium NOR5-3]
          Length = 302

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 152/302 (50%), Gaps = 16/302 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + +E+GLS+ TL +Y  D + F  + +  T  + T +  R    T+I A+++  
Sbjct: 14  ETYLDAVWMEKGLSENTLAAYRRDLQSFARWAS--TRNRSTTKVAR----TDIEAYLAYL 67

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
              K   RS  R+LS ++ + ++L +     E   L + + +    LP+ L+E       
Sbjct: 68  LAHKRSPRSAARALSCLRGYYRHLLRSGQLKEDPTLGLDSPRLGRPLPKTLSEADV---- 123

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            + LL   +  + I  R+  +L LLY CGLR+SE   LT   +  +Q  +RI GKG K R
Sbjct: 124 -DALLQAPNLEELIGFRDRCMLELLYACGLRVSELTGLTVSQLSLNQGVVRISGKGGKER 182

Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+       +  Y  ++ P  L       LF   R + +    F   I+Q     G+ 
Sbjct: 183 LVPVGEEALHWLQRYLREIRPQLLGETSSEVLFPSRRAQMMTRQTFWHRIKQHAITAGIH 242

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++ + 
Sbjct: 243 KPISPHVLRHAFATHLVNHGADLRVVQLLLGHSDLSTTQIYTHVARQR----LQSLHAKH 298

Query: 318 HP 319
           HP
Sbjct: 299 HP 300


>gi|33242394|ref|NP_877335.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae
           TW-183]
 gi|33236905|gb|AAP98992.1| tyrosine recombinase [Chlamydophila pneumoniae TW-183]
 gi|269302825|gb|ACZ32925.1| tyrosine recombinase XerD [Chlamydophila pneumoniae LPCoLN]
          Length = 299

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/300 (32%), Positives = 151/300 (50%), Gaps = 26/300 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L ++RGL + ++ +Y  D   FL   A        I + + +S   +  F  +   +K  
Sbjct: 18  LSVDRGLCQQSIAAYRQDISSFLTISA--------ISSPQDISQNSVYIFAEELYRRKEA 69

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           + +L R L  +K F  +LK +++     I+    + K   LP  L  ++   L+  V L 
Sbjct: 70  ETTLARRLIALKVFFLFLKDQQLLPYPPIIEHPKIWKR--LPSVLTPQEVDALL-AVPLQ 126

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
                + +  R++AIL+ LY  G+R+SE   L   ++ DD   +R+ GKG K R+VPL  
Sbjct: 127 MEKNPRHLAFRDTAILHTLYSTGVRVSELCDLRLGHVSDD--CIRVTGKGSKTRLVPLGS 184

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLN-PGVFQRYIRQLRRYLGLPLS 259
             R+AI  Y  LCPF      + P    LF   RG  L    V++R     ++    P+S
Sbjct: 185 RAREAIDAY--LCPFRDQYQKKNPHEDHLFLSTRGHKLERSCVWRRIHNYAKQVTSKPVS 242

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H+LRH+FATHLL N  DLR IQ +LGH R+++T++YT+V      D ++E +   HP
Sbjct: 243 --PHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHV----AADSLIEKFLAHHP 296


>gi|15618932|ref|NP_225218.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae
           CWL029]
 gi|15836555|ref|NP_301079.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae
           J138]
 gi|16752001|ref|NP_445367.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae
           AR39]
 gi|34223088|sp|Q9Z6N5|XERD_CHLPN RecName: Full=Tyrosine recombinase xerD
 gi|4377356|gb|AAD19161.1| Integrase/recombinase [Chlamydophila pneumoniae CWL029]
 gi|7189741|gb|AAF38621.1| integrase/recombinase XerD [Chlamydophila pneumoniae AR39]
 gi|8979397|dbj|BAA99231.1| integrase/recombinase [Chlamydophila pneumoniae J138]
          Length = 301

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/300 (32%), Positives = 151/300 (50%), Gaps = 26/300 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L ++RGL + ++ +Y  D   FL   A        I + + +S   +  F  +   +K  
Sbjct: 20  LSVDRGLCQQSIAAYRQDISSFLTISA--------ISSPQDISQNSVYIFAEELYRRKEA 71

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           + +L R L  +K F  +LK +++     I+    + K   LP  L  ++   L+  V L 
Sbjct: 72  ETTLARRLIALKVFFLFLKDQQLLPYPPIIEHPKIWKR--LPSVLTPQEVDALL-AVPLQ 128

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
                + +  R++AIL+ LY  G+R+SE   L   ++ DD   +R+ GKG K R+VPL  
Sbjct: 129 MEKNPRHLAFRDTAILHTLYSTGVRVSELCDLRLGHVSDD--CIRVTGKGSKTRLVPLGS 186

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLN-PGVFQRYIRQLRRYLGLPLS 259
             R+AI  Y  LCPF      + P    LF   RG  L    V++R     ++    P+S
Sbjct: 187 RAREAIDAY--LCPFRDQYQKKNPHEDHLFLSTRGHKLERSCVWRRIHNYAKQVTSKPVS 244

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H+LRH+FATHLL N  DLR IQ +LGH R+++T++YT+V      D ++E +   HP
Sbjct: 245 --PHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHV----AADSLIEKFLAHHP 298


>gi|240949807|ref|ZP_04754136.1| site-specific tyrosine recombinase XerD [Actinobacillus minor
           NM305]
 gi|240295724|gb|EER46419.1| site-specific tyrosine recombinase XerD [Actinobacillus minor
           NM305]
          Length = 297

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 150/303 (49%), Gaps = 18/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L  E GLS  T+ SY  D       L+ +TE     +    + +  ++ F+  R
Sbjct: 9   EQFLDTLWQEHGLSDNTVSSYRLD-------LSLFTEWLDEPRAFLTVDHHTLQEFLGYR 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R LS ++ F ++L       +     + + +K + LP+ LNE+Q + L 
Sbjct: 62  FDQGYKASSSLRMLSCLRKFFRFLYLENYRKDDPTAMLISPRKPSRLPKTLNEEQVMDL- 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
               L   +    I+ R+ A+L LLY  GLR++E +SLT +N+   Q  +RI GKGDK R
Sbjct: 121 ----LECPNPLDPIELRDKAMLELLYATGLRVTELISLTTENLSLRQGVVRIIGKGDKER 176

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       I E++       LN      +F   RG+ +    F   I+      G+ 
Sbjct: 177 LVPLGEEASYWIQEFFQYGRGILLNNEPSNVVFPSKRGQMMTRQTFWHRIKHYAVLAGID 236

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V        +  ++++
Sbjct: 237 SEKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR----LKSLHEK 292

Query: 317 THP 319
            HP
Sbjct: 293 YHP 295


>gi|330501235|ref|YP_004378104.1| site-specific tyrosine recombinase XerC [Pseudomonas mendocina
           NK-01]
 gi|328915521|gb|AEB56352.1| site-specific tyrosine recombinase XerC [Pseudomonas mendocina
           NK-01]
          Length = 298

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 153/309 (49%), Gaps = 27/309 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L++L  ER +S  TL  Y  D  + L F      E   +    +L    +R  +++   
Sbjct: 8   YLEHLRRERQVSVHTLDGYRRDLGKVLAFC-----EAEGLSDWAELDTRNLRRLVARLHQ 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q +  RSL R LS  +   +YL +  +        +   K+   LPR L+  ++  L+D 
Sbjct: 63  QGLSSRSLARLLSATRGLYQYLLREGLCRHDPATGLSPPKRERRLPRTLDADRSAQLLDG 122

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +     E  +I  R+ A+L L Y  GLR+SE + L    +      +R++GKG+K+R +
Sbjct: 123 AV-----EDDFIARRDQAMLELFYSSGLRLSELVGLDLDGLDLPAGLIRVRGKGNKVREL 177

Query: 201 PLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR-RYLG 255
           P+    R+A+ ++  L     P D        +F   +G+ L P   Q  + Q   R LG
Sbjct: 178 PVGSLARQALEQWLPLRKLANPSDG------AVFISQQGRRLGPRAVQLRVHQAGVRELG 231

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
             L    H LRHSFA+H+L +  DLR++Q +LGH  ++TTQIYT+++ ++    +  +YD
Sbjct: 232 QHLHP--HMLRHSFASHMLESSQDLRAVQELLGHADIATTQIYTHLDFQH----LANVYD 285

Query: 316 QTHPSITQK 324
           Q HP   +K
Sbjct: 286 QAHPRAKRK 294


>gi|332184671|gb|AEE26925.1| Tyrosine recombinase xerD [Francisella cf. novicida 3523]
          Length = 292

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 145/300 (48%), Gaps = 18/300 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L NL +E GLS+ T+ SY  D +          E       +  L + ++ AFIS R  
Sbjct: 8   FLDNLWLEHGLSQNTISSYRTDLKLL--------ENYFAKTDLISLDFEQLYAFISYRSK 59

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                RS  R +S ++ F  +L     T  +    +   K +  LP+ + E         
Sbjct: 60  NGYSSRSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDV-----E 114

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LLH    T+ +  R+ A+L L+Y  GLR+SE + L   +I  +   +++ GKG K RIV
Sbjct: 115 RLLHAPDMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIV 174

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+     + + +Y+      L+ N  +  +F     K +    F   I+      G+   
Sbjct: 175 PIGEYALEYLQKYFAEARMSLSKNFKEKAVFISKHTKRITRQSFWHRIKNYALIAGINTD 234

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLRS+Q +LGH  +STT IYT+++       + EIY + HP
Sbjct: 235 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR----LQEIYQKHHP 290


>gi|239631511|ref|ZP_04674542.1| tyrosine recombinase XerC subunit [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239525976|gb|EEQ64977.1| tyrosine recombinase XerC subunit [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 298

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/294 (31%), Positives = 147/294 (50%), Gaps = 14/294 (4%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           LE+ER  S  T+ +Y  D ++F  FL    +        R +   +++ +++    Q + 
Sbjct: 11  LEVERQYSPETVTAYLSDLQEFQAFL----KANGGFTDFRHVDDLDVQTYLTDLNKQDLA 66

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQALTLVDNVLL 143
             S+ R +S ++SF +YL +  +  +SN   +  LKK +  LP+   E +   L   V  
Sbjct: 67  RTSIARKISSLRSFYRYLTRIDVV-KSNPFELVELKKQHHHLPQFFYEAEIQELFKTVAG 125

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
            T      +D RN A+L +LYG G+R+SE   LT   +  + + L I GKG+K R VP  
Sbjct: 126 KTP-----LDQRNRALLEVLYGTGIRVSECAKLTLNQVDFNTALLLIHGKGNKDRYVPFG 180

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
              ++A+  Y       L    Q     +F    G+P+     +  + QL +   L  + 
Sbjct: 181 QYAQQALRTYLKDGRQVLMAKSQAQHRYVFVNQYGRPITSRGIEYILDQLIKQTTLTANI 240

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
             H LRHSFATH+L +G DLR++Q +LGH  LSTTQIYT+V   +  +  M+ Y
Sbjct: 241 HPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYY 294


>gi|291004130|ref|ZP_06562103.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
          Length = 301

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 142/298 (47%), Gaps = 9/298 (3%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           ++L+ ERGLS  T+++Y  D    L       EE+   + +  L  T +R +++ +    
Sbjct: 10  RHLKAERGLSAHTVRAYIGDVVSLLDHFCAGDEER---KGLNGLGLTVLREWLAAQHADG 66

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
               +L R  +  ++F  +  + ++        +        LP  L  +QA + + +  
Sbjct: 67  ASRSTLARRAASARTFTAWAHRAELLPHDPGPRLAAPAPKRKLPTVLRAEQAKSAM-SAS 125

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
              + +   I  R+ A++ LLY  G+R+SE   L   ++  ++  +R+ GKGDK R VP 
Sbjct: 126 QAGAEQGDPIALRDHAVVELLYATGVRVSELCGLDLDDVDHERRVVRVIGKGDKERAVPF 185

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
                 A+  +      +L  +   P LF G RG  L+P   +R +      +       
Sbjct: 186 GVPAEDAVSRWISAGRPELATDASGPALFLGARGGRLDPRAVRRVVHDAVGAVSGATDVG 245

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            H LRHS ATHLL  G DLRS+Q +LGH  L+TTQ+YT+V  +     +  I+D+THP
Sbjct: 246 PHGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTHVTVER----LKAIHDRTHP 299


>gi|308173576|ref|YP_003920281.1| site-specific tyrosine recombinase [Bacillus amyloliquefaciens DSM
           7]
 gi|307606440|emb|CBI42811.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus amyloliquefaciens DSM 7]
 gi|328553491|gb|AEB23983.1| site-specific tyrosine recombinase XerC [Bacillus amyloliquefaciens
           TA208]
 gi|328911717|gb|AEB63313.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus amyloliquefaciens LL3]
          Length = 305

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 151/302 (50%), Gaps = 17/302 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +++ L+IE+  S+ T+ +Y     +F +FL         I  + + +Y ++R F+++   
Sbjct: 12  FVEYLQIEKNYSQYTIVNYVNSIEEFGMFL-----HAQNINGLNEAAYHDVRIFLTEAYE 66

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  +++ + +S ++SF K+L + K+  E+    +   K+   +P+ L EK+       
Sbjct: 67  KGLSRKTISKKISALRSFYKFLMREKLVEENPFQLVHLPKQEKRIPKFLYEKEL-----E 121

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            L   S  ++    R+ A+L LLY  G+R+SE  +LT  ++     T+ + GKG K R +
Sbjct: 122 ELFAVSDRSQPSGMRDQALLELLYATGMRVSECCTLTVSDLDLFMDTVLVHGKGRKQRYI 181

Query: 201 PLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           P     R A+  Y +    C  +        LF   RG PL     +  +  L +     
Sbjct: 182 PFGSYARDALELYINSGRQCLLEKAKEPHDVLFVNQRGGPLTARGIRYILSGLVKKASGT 241

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           L    H LRH+FATHLL+ G DLRS+Q +LGH  LS+TQIYT+V+     + +   Y   
Sbjct: 242 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSK----EMLRNTYMSH 297

Query: 318 HP 319
           HP
Sbjct: 298 HP 299


>gi|28867454|ref|NP_790073.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213970725|ref|ZP_03398850.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato T1]
 gi|81732947|sp|Q88B11|XERC_PSESM RecName: Full=Tyrosine recombinase xerC
 gi|28850688|gb|AAO53768.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213924559|gb|EEB58129.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato T1]
          Length = 299

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 150/306 (49%), Gaps = 21/306 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +  +L  ER +S  TL++Y  D  + L +      +K  + +   L    +R+F +++  
Sbjct: 8   YCMHLRSERQVSPHTLEAYRRDLSKVLAYC-----QKARLSSWNDLDIQHLRSFTARQHQ 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q    RSL R LS ++ F KYL +  +        +   K    LP+ L+  +   L+D 
Sbjct: 63  QGQSSRSLARMLSAVRGFYKYLNREGLCQHDPANGLSPPKGERRLPKTLDTDRTAQLLDG 122

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +     E  ++  R+ AI+ LLY  GLR+SE   L    +      +++ GKG K R++
Sbjct: 123 GV-----EDDFLAHRDQAIMELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVL 177

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPL 258
           P+    R+A+  +    P     N Q   +F   +GK L P   Q  I+    R LG  L
Sbjct: 178 PVGSKARQALETW---LPLRALTNPQDDAVFVSQQGKRLGPRAVQLRIKTAGERELGQNL 234

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +YD  H
Sbjct: 235 HP--HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAH 288

Query: 319 PSITQK 324
           P   +K
Sbjct: 289 PRAKRK 294


>gi|330952167|gb|EGH52427.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae Cit
           7]
          Length = 299

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 150/305 (49%), Gaps = 19/305 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +  +L  ER +S  TL++Y  D  + L +      +K  + +   L    +R+F +++  
Sbjct: 8   YCMHLRSERQVSPHTLEAYRRDLGKVLAYC-----QKARLSSWSDLDIQHLRSFTARQHQ 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q    RSL R LS ++ F KYL +  I        +   K    LP+ L+  +   L+D 
Sbjct: 63  QGQSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDG 122

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +     E  ++  R+ AIL LLY  GLR+SE   L    +      +++ GKG K R++
Sbjct: 123 GV-----EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVL 177

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLS 259
           P+    R+A+  +  L    L       +F  ++G+ L P   Q  ++    R LG  L 
Sbjct: 178 PVGSKARQALEVWLPLRA--LTHPQDDAVFVSLQGRRLGPRAIQVRLKAAGERELGQNLH 235

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +YD  HP
Sbjct: 236 P--HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAHP 289

Query: 320 SITQK 324
              +K
Sbjct: 290 RAKRK 294


>gi|29348252|ref|NP_811755.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253569382|ref|ZP_04846792.1| integrase [Bacteroides sp. 1_1_6]
 gi|298386055|ref|ZP_06995612.1| tyrosine recombinase XerD [Bacteroides sp. 1_1_14]
 gi|29340155|gb|AAO77949.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251841401|gb|EES69482.1| integrase [Bacteroides sp. 1_1_6]
 gi|298261283|gb|EFI04150.1| tyrosine recombinase XerD [Bacteroides sp. 1_1_14]
          Length = 319

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/286 (32%), Positives = 155/286 (54%), Gaps = 13/286 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + Q L++E+ LS  TL +Y  D  + + FL   T E I +    ++  ++++ F +  
Sbjct: 18  RKYQQYLKLEKSLSPNTLDAYLTDLDKLMSFL---TLEGIDVL---EVCLSDLQRFAAGL 71

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               I  RS  R LSGIKSF ++L             +   K    LP  L  ++    +
Sbjct: 72  HDIGIHPRSQARILSGIKSFFRFLIMADYLEADPSELLEGPKIGLKLPEVLTVEE----I 127

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           DN++  +   +K    RN AIL  LY CGLR+SE +SL   ++  D+  ++++GKG K R
Sbjct: 128 DNII-SSVDRSKAEGQRNRAILETLYSCGLRVSELVSLKLSDLYFDEGFIKVEGKGSKQR 186

Query: 199 IVPLLP-SVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGL 256
           +VP+ P ++ +  L + D    ++  + +  +F   R GK L+  +    I++L +  G+
Sbjct: 187 LVPISPRAINEIKLYFLDRNRIEVKKDYEDFVFVSQRRGKSLSRIMIFHMIKELAQNAGI 246

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++
Sbjct: 247 TKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHID 292


>gi|323341690|ref|ZP_08081923.1| tyrosine recombinase XerC [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464115|gb|EFY09308.1| tyrosine recombinase XerC [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 296

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/297 (30%), Positives = 154/297 (51%), Gaps = 19/297 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++++++ I    S+ T  +YE D RQFL F+    E +   +  R ++Y     +++   
Sbjct: 9   DFMRHIAITNTSSEHTNVAYERDIRQFLDFI----EGQAVHEVDRLMAYD----YLNMLY 60

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +   S+ R +S ++SF K+L+     T++    ++  ++   LP  L   +  TL+ 
Sbjct: 61  DSNLSSSSVARKISTLRSFYKFLQINYGLTDNPFQQIKIKRQGRHLPHFLMYDEIETLL- 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                 S +   +  RN  ++ L+Y CGLR+SE + L   ++   + +LR+ GKG+K R 
Sbjct: 120 -----LSCDESVLGVRNQVMIELMYACGLRVSEVVDLQIHDLDLTERSLRVIGKGNKERQ 174

Query: 200 VPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +    S+   +  Y +L  P   N++    +F   RGKPL P   Q  +    +  GL +
Sbjct: 175 LFFYESLVPKLWSYLNLYRPQFPNVSDTEAVFLNQRGKPLTPRGIQHILEHQGKTAGLRM 234

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
               H LRHSFATHLL NG  LR +Q++LGH  LSTTQIYT+V+ +     + E+YD
Sbjct: 235 KLHPHMLRHSFATHLLDNGASLRVVQTLLGHESLSTTQIYTHVSMQK----IKEVYD 287


>gi|291484165|dbj|BAI85240.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           natto BEST195]
          Length = 304

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 155/308 (50%), Gaps = 17/308 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +++ L+IE+  S+ T+ +Y     +F  FL         I    + +Y + R F+++   
Sbjct: 11  FVEYLQIEKNNSQYTIVNYVDSIEEFETFLRVQG-----INGFEEAAYQDTRIFLTEAYE 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  R++ + +S ++SF K+L + K+  E+    +   K+   +P+ L +K+   L + 
Sbjct: 66  KGLSRRTISKKISALRSFYKFLMREKLIEENPFQLVHLPKQEKRIPKFLYQKELEELFE- 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                S  ++    R+ A+L LLY  G+R+SE  S+T  ++     T+ + GKG K R +
Sbjct: 125 ----VSDISQPAGMRDQALLELLYATGMRVSECCSITINDVDLFMDTVLVHGKGKKQRYI 180

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           P     R+A+  Y +     L +  + P   LF   RG PL     +  +  L +     
Sbjct: 181 PFGSYAREALKVYMNSGRQCLLMKAKEPHDLLFVNQRGGPLTARGIRHILSGLVQKASST 240

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           L    H LRH+FATHLL+ G DLRS+Q +LGH  LS+TQIYT+V+     + +   Y   
Sbjct: 241 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSK----EMLRNTYMSH 296

Query: 318 HPSITQKD 325
           HP   +K+
Sbjct: 297 HPRAFKKN 304


>gi|206576348|ref|YP_002236649.1| tyrosine recombinase XerD [Klebsiella pneumoniae 342]
 gi|290511308|ref|ZP_06550677.1| tyrosine recombinase XerD [Klebsiella sp. 1_1_55]
 gi|206565406|gb|ACI07182.1| tyrosine recombinase XerD [Klebsiella pneumoniae 342]
 gi|289776301|gb|EFD84300.1| tyrosine recombinase XerD [Klebsiella sp. 1_1_55]
          Length = 298

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 159/307 (51%), Gaps = 17/307 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L + + +L  L +ER L++ TL +Y    R   + + +     +++ ++      +++A 
Sbjct: 5   LAQIEQFLDALWLERNLAENTLSAYR---RDLTMLVEWLHHRGLSLASV---GSDDLQAL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R+T      S  R LS ++ F ++L + KI  +     + + K    LP+ L+E Q 
Sbjct: 59  LAERQTGGYKATSTARLLSAVRRFFQHLYREKIRPDDPSALLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+   L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  LR+ GKG
Sbjct: 119 ERLLQAPLVEQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVLRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y +   P+ LN      LF   R + +    F   I+     
Sbjct: 174 NKERLVPLGEEAVMWVENYLEYGRPWLLNGVASDVLFPSQRAQQMTRQTFWHRIKHYAVL 233

Query: 254 LGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+  +  + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSAKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHP 319
           ++ Q HP
Sbjct: 290 LHQQHHP 296


>gi|330870011|gb|EGH04720.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330892013|gb|EGH24674.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 290

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 150/303 (49%), Gaps = 21/303 (6%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           +L  ER +S  TL++Y  D  + L +      +K  + +   L    +R+F +++  Q  
Sbjct: 2   HLRSERQVSPHTLEAYRRDLGKVLAYC-----QKAQLSSWNDLDIQHLRSFTARQHQQGQ 56

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
             RSL R LS ++ F KYL +  I        +   K    LP+ L+  +   L+D  + 
Sbjct: 57  SSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGV- 115

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
               E  ++  R+ AIL LLY  GLR+SE   L    +      +++ GKG K R++P+ 
Sbjct: 116 ----EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVG 171

Query: 204 PSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLSTT 261
              R+A LE +   P     N Q   +F   +GK L P   Q  ++    R LG  L   
Sbjct: 172 SKARQA-LEIW--LPLRALTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNLHP- 227

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            H LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +YD  HP  
Sbjct: 228 -HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAHPRA 282

Query: 322 TQK 324
            +K
Sbjct: 283 KRK 285


>gi|218961949|ref|YP_001741724.1| site-specific recombinase, phage integrase family [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730606|emb|CAO81518.1| site-specific recombinase, phage integrase family [Candidatus
           Cloacamonas acidaminovorans]
          Length = 298

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 146/295 (49%), Gaps = 21/295 (7%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEE-KITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           G S  T+ +Y+ D  QF  F+  Y E  ++ I+ I  L+   IR F      +   +RSL
Sbjct: 16  GKSPRTITAYKLDLEQFHSFIQRYFENGEVDIKGITVLN---IRDFFRFLNEKPDCNRSL 72

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R  + + SF +Y K+      + +  ++  K    LP+   E++  TL     L     
Sbjct: 73  ARKSAALNSFFRYCKRSGFIQNNPMEKIKRPKYEVPLPKCFTEEEVRTL-----LSIPDT 127

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
                 RN AIL  LY  GLRISE   +  Q+I   +  +R+ GKG+K RIVPL     +
Sbjct: 128 DSPFGIRNKAILETLYSSGLRISELAGIRLQDIDLKRGLVRVTGKGNKQRIVPLGSYAIE 187

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQRYIRQLRRYLGLPLSTTAHT 264
           AI  Y  + P  +  N    LF    GK  +      + +RY   + +  G     + H+
Sbjct: 188 AINNYLKVRPQFMRENSPDLLFLTKSGKAFDTKQLDIILKRYFELVAKAKGY----SPHS 243

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           LRHSFATHLLS G DLR+IQ +LGH  LSTT+ YT+++ ++    + E Y + HP
Sbjct: 244 LRHSFATHLLSRGADLRAIQELLGHSLLSTTETYTHISLED----IKEAYKKGHP 294


>gi|294102502|ref|YP_003554360.1| integrase family protein [Aminobacterium colombiense DSM 12261]
 gi|293617482|gb|ADE57636.1| integrase family protein [Aminobacterium colombiense DSM 12261]
          Length = 297

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 158/312 (50%), Gaps = 21/312 (6%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           + E +SF L      +L+ +   + +S  T+++Y  D  QF+ +L    E+ +T+  + +
Sbjct: 3   MVEKLSFAL----DYYLEQMRFAKSMSMYTIENYAVDLNQFVNYL---LEQNVTL--LSE 53

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +    IR ++    +      S+ R LS IK++  +L  +K+  +    N++  +    L
Sbjct: 54  VDTRIIREYLRVLASFGYARSSVARKLSAIKNWFAFLVDKKLVGKDPAKNVKGPRLPGRL 113

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           PRAL+ +Q   L++     ++        R+ A+L LLYGCGLRI E + L  ++I   +
Sbjct: 114 PRALSVEQVSRLIEVGCAKSADPL-----RDKAVLELLYGCGLRIGELVVLRWEDIDFAE 168

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             +R++GKG+K R++P+     KA+  + D C       + + LF G  G  L      R
Sbjct: 169 RWVRVRGKGNKERMIPVGKMAIKALYNWRDSC------QMGIFLFTGEEGSHLTVRTVGR 222

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            + +  +  GL    T H LRHSFATH+L  G  +R +Q +LGH  L TTQ Y  V +++
Sbjct: 223 IVDRAAKRAGLS-GVTPHMLRHSFATHMLEGGASIRVVQELLGHESLITTQRYLTVTAEH 281

Query: 306 GGDWMMEIYDQT 317
                +E + +T
Sbjct: 282 LKQSYIEAFPRT 293


>gi|257482612|ref|ZP_05636653.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 290

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 150/303 (49%), Gaps = 21/303 (6%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           +L  ER +S  TL++Y  D  + L +      +K  + +   L    +R+F +++  Q  
Sbjct: 2   HLRSERQVSPHTLEAYRRDLGKVLAYC-----QKAQLSSWNDLDIQHLRSFTARQHQQGQ 56

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
             RSL R LS ++ F KYL +  I        +   K    LP+ L+  +   L+D  + 
Sbjct: 57  SSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGDRRLPKTLDTDRTAQLLDGGV- 115

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
               E  ++  R+ AIL LLY  GLR+SE   L    +      +++ GKG K R++P+ 
Sbjct: 116 ----EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVG 171

Query: 204 PSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLSTT 261
              R+A LE +   P     N Q   +F   +GK L P   Q  ++    R LG  L   
Sbjct: 172 SKARQA-LEIW--LPLRALTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNLHP- 227

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            H LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +YD  HP  
Sbjct: 228 -HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAHPRA 282

Query: 322 TQK 324
            +K
Sbjct: 283 KRK 285


>gi|330964222|gb|EGH64482.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 290

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 149/303 (49%), Gaps = 21/303 (6%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           +L  ER +S  TL++Y  D  + L +      +K  + +   L    +R+F +++  Q  
Sbjct: 2   HLRSERQVSPHTLEAYRRDLSKVLAYC-----QKAQLSSWNDLDIQHLRSFTARQHQQGQ 56

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
             RSL R LS ++ F KYL +  +        +   K    LP+ L+  +   L+D  + 
Sbjct: 57  SSRSLARMLSAVRGFYKYLNREGLCQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGV- 115

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
               E  ++  R+ AI+ LLY  GLR+SE   L    +      +++ GKG K R++P+ 
Sbjct: 116 ----EDDFLAHRDQAIMELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVG 171

Query: 204 PSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLSTT 261
              R+A+  +    P     N Q   +F   +GK L P   Q  I+    R LG  L   
Sbjct: 172 SKARQALETW---LPLRALTNPQDDAVFVSQQGKRLGPRAVQLRIKTAGERELGQNLHP- 227

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            H LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +YD  HP  
Sbjct: 228 -HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAHPRA 282

Query: 322 TQK 324
            +K
Sbjct: 283 KRK 285


>gi|291457670|ref|ZP_06597060.1| tyrosine recombinase XerD [Bifidobacterium breve DSM 20213]
 gi|291380723|gb|EFE88241.1| tyrosine recombinase XerD [Bifidobacterium breve DSM 20213]
          Length = 309

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 154/308 (50%), Gaps = 17/308 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           R+ +L ++ IERGL+K T+ +YE D  +++ +L  +      I     ++  ++  +I+ 
Sbjct: 10  REQFLVHIGIERGLAKATVSAYESDLNKYVAWLQTHG-----ITKPDDIAKQDVEDYIAA 64

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                   RS  R L+ I  F ++   +   +     +++  K ++ LP  L+  +   L
Sbjct: 65  LDADGESARSKARRLASIHEFHRFALAQHAVSADVAASVKAPKGASVLPDVLSVDEVSRL 124

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D   +  S  T  +  R+ A+L  +Y  G R+SEA+     +I  ++  +R+ GKG K 
Sbjct: 125 LDAAAVGGS--TDPVVLRDKALLEFMYATGCRVSEAVGTNLDDIDLEEKVVRLMGKGSKQ 182

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLN--LNIQLP----LFRGIRGKPLNPGVFQRYIRQLR 251
           R+VPL    R +++ Y +    +L      ++P    LF   RGK ++       ++   
Sbjct: 183 RLVPLGSYARNSVVAYLNAGRGELERRSTAKVPERRALFLNKRGKRISRQSVWEIVKTAG 242

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               +      HTLRHSFATHL+  G D+R++Q +LGH  ++TTQIYT+V+ +     ++
Sbjct: 243 GRADITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPEA----LI 298

Query: 312 EIYDQTHP 319
           E Y   HP
Sbjct: 299 ETYLTAHP 306


>gi|208779461|ref|ZP_03246806.1| tyrosine recombinase XerD [Francisella novicida FTG]
 gi|208744422|gb|EDZ90721.1| tyrosine recombinase XerD [Francisella novicida FTG]
          Length = 292

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/300 (31%), Positives = 147/300 (49%), Gaps = 18/300 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L NL +E GLS+ T+ SY  D    L FL  Y  +   I     L + ++ AFIS R  
Sbjct: 8   FLDNLWLEHGLSQNTISSYRTD----LKFLQNYFAKTDLIS----LDFEQLYAFISYRSK 59

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                RS  R +S ++ F  +L     T  +    +   K +  LP+ + E         
Sbjct: 60  NGYSSRSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDV-----E 114

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL     T+ +  R+ A+L L+Y  GLR+SE + L   +I  +   +++ GKG K RIV
Sbjct: 115 RLLQAPDMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIV 174

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+     + + +Y+      L+ N  +  +F     K +    F   I+      G+   
Sbjct: 175 PIGEYALEYLQKYFAEARMSLSKNFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTD 234

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLRS+Q +LGH  +STT IYT+++       + EIY + HP
Sbjct: 235 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR----LQEIYQKHHP 290


>gi|30249429|ref|NP_841499.1| phage integrase domain/SAM domain-containing protein [Nitrosomonas
           europaea ATCC 19718]
 gi|30138792|emb|CAD85369.1| Phage integrase:Phage integrase N-terminal SAM-like domain
           [Nitrosomonas europaea ATCC 19718]
          Length = 318

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/296 (32%), Positives = 149/296 (50%), Gaps = 13/296 (4%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E GLS+ TL SY  D  Q + +L     +  T  ++  ++  ++ AF+S R  Q + 
Sbjct: 31  LWLEDGLSRNTLASYRADLMQLVEWLG---RQPRTNGSLSDVTQADLLAFLSDRIGQGVK 87

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +  R+L+ IK F +YL ++         N+ + K S  LP +L E +        LL 
Sbjct: 88  ASTTCRALTCIKRFYRYLLRQGKILADPATNIDSPKISRHLPVSLTETEV-----EALLA 142

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
                + +  R+ A+L +LY  GLR+SE + L+   I  D   +RI GKG K R++PL  
Sbjct: 143 APDTRQPLGLRDRAMLEILYAAGLRVSELVGLSISQIRQDMGVVRILGKGSKERLIPLGE 202

Query: 205 SVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
                +  Y  +  P  L        F   RG  +    F   I++  R  G+    + H
Sbjct: 203 EALHWLSLYLQEARPVLLAGKHSNMSFVTTRGDAMTRQAFWYLIKRHARQAGIVKLLSPH 262

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           TLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     + +++ + HP
Sbjct: 263 TLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LKQLHARHHP 314


>gi|296330829|ref|ZP_06873304.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674347|ref|YP_003866019.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296151834|gb|EFG92708.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412591|gb|ADM37710.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 304

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 154/308 (50%), Gaps = 17/308 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +++ L+IE+  S+ T+ +Y     +F  FL         I    +  Y + R F+++   
Sbjct: 11  FVEYLQIEKNYSQYTIVNYVDSIEEFETFLRVQG-----INGFEKAVYQDTRIFLTEAYE 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  R++ + +S ++SF K+L + K+  E+    +   K+   +P+ L +K+   L + 
Sbjct: 66  KGLSRRTISKKISALRSFYKFLMREKLVEENPFQLVHLPKQEKRIPKFLYQKELEELFE- 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                S  ++    R+ A+L LLY  G+R+SE  S+T  ++     T+ + GKG K R +
Sbjct: 125 ----VSDISQPTGMRDQALLELLYATGMRVSECCSITVNDVDLFMDTVLVHGKGKKQRYI 180

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           P     R+A+  Y +     L +  + P   LF   RG PL     +  +  L +     
Sbjct: 181 PFGSYAREALKVYMNSGRQCLLMKAKEPHDLLFVNQRGGPLTARGIRHILSGLVQKASGT 240

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           L    H LRH+FATHLL+ G DLRS+Q +LGH  LS+TQIYT+V+     + +   Y   
Sbjct: 241 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSK----EMLRNTYMSH 296

Query: 318 HPSITQKD 325
           HP   +K+
Sbjct: 297 HPRAFKKN 304


>gi|302346034|ref|YP_003814387.1| phage integrase, N-terminal SAM domain protein [Prevotella
           melaninogenica ATCC 25845]
 gi|302149123|gb|ADK95385.1| phage integrase, N-terminal SAM domain protein [Prevotella
           melaninogenica ATCC 25845]
          Length = 314

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/280 (31%), Positives = 145/280 (51%), Gaps = 12/280 (4%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L++E+G S  TL +Y  D  +   +LA    E++ +  ++        AFIS      IG
Sbjct: 18  LKLEKGYSVNTLDAYMRDVDKLFRYLAV---EQVDVLDVKLEDLEHFAAFISD---LGIG 71

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            RSL R LSG++ F ++L             + + K+ + LP  L+  +   L   + L 
Sbjct: 72  PRSLARILSGVRQFYRFLVIDGYLEVDPTELLESPKQPDHLPEVLSTAEVDLLEQAIDL- 130

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
               +KW   RN AI+ +L+ CGLR+SE  +L   N+  ++  +R+ GKG K R+VP+ P
Sbjct: 131 ----SKWEGHRNRAIIEVLFSCGLRVSELTNLKLSNLYIEEQYIRVMGKGSKERLVPISP 186

Query: 205 SVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
                +  ++ D     +    +  +F   RG+ L   +    I++     G+  + + H
Sbjct: 187 RALDELSYWFADRNVMKIKPGEEDYVFLNRRGQHLTRTMILIMIKRYAVEAGIKKTISPH 246

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           TLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++
Sbjct: 247 TLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDT 286


>gi|325289988|ref|YP_004266169.1| tyrosine recombinase XerD subunit [Syntrophobotulus glycolicus DSM
           8271]
 gi|324965389|gb|ADY56168.1| tyrosine recombinase XerD subunit [Syntrophobotulus glycolicus DSM
           8271]
          Length = 315

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 105/321 (32%), Positives = 166/321 (51%), Gaps = 27/321 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +++  L+IERGLS  T QSY  D ++ LI+L    EE      + Q    ++ +F+    
Sbjct: 8   DYINYLKIERGLSGNTCQSYRRDLKKLLIYL----EE--NQNNLFQCQPVDLFSFLYSVN 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q I  RS+ R  + +K F  YL      T+     +   K    LP  L+E    +L++
Sbjct: 62  EQGISARSIARYTAALKGFFSYLSDEGKRTDDPTELIVVPKLEQPLPHVLSESAVNSLIN 121

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           +     S     ++ R++AIL +LYG GLR+SE ++L+   I  +   +R +GKG+K RI
Sbjct: 122 HRDDKESQAGMLLEIRDTAILEVLYGSGLRVSELITLSLNQISLEVGYVRCRGKGNKERI 181

Query: 200 VPL----LPSVRKAILEYYDLC------PFDLNLNIQLPLFRGIRGKPLN-PGVFQRYI- 247
           VPL    L +++K +LE  +        P     N    LF   RG  L   G++     
Sbjct: 182 VPLSEPCLLALQKYLLEARNHLLRKNRKPTTAESN---SLFLNARGGRLTRQGIWTILKN 238

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           R ++   G  +    H +RH FATHLL +G DLRS+Q +LGH  +STTQIYT++ +KN  
Sbjct: 239 RAVKNKAGAKI--YPHLMRHCFATHLLDHGADLRSVQEMLGHADISTTQIYTHL-TKN-- 293

Query: 308 DWMMEIYDQTHPSITQKDKKN 328
             + +++++ HP   +  +KN
Sbjct: 294 -RLRDVFEKAHPRAKRGGQKN 313


>gi|182415361|ref|YP_001820427.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177842575|gb|ACB76827.1| integrase family protein [Opitutus terrae PB90-1]
          Length = 324

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 101/319 (31%), Positives = 156/319 (48%), Gaps = 21/319 (6%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP  V  E  +  +N+L +   ER  S  T+++Y      F  +L       +  +    
Sbjct: 20  LPAEVQAEWWQPFENYLAH---ERRYSAYTVRNYRQAFEDFYRWLVL---AGVWERGFDA 73

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           L   E+R F+ + + ++ G R+L   +SG++SF K+  +R     +  L +   K    L
Sbjct: 74  LQMRELRDFVIEAQ-RRFGRRTLHNHVSGLRSFFKFWLRRGKVQRNPFLGVPLPKLEKRL 132

Query: 126 PRALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           P+ L E+Q + L+     LL +     +   R+  +L LLYG GLR+SE   L    I  
Sbjct: 133 PKFLTEEQMVRLLAGPQQLLASESIDAFTAHRDRLVLELLYGAGLRVSELTGLNYGAIDL 192

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           +    RI GKG K R+ P+       + ++ D   F        P+    RG  ++P   
Sbjct: 193 EAGVARIVGKGRKERLCPIGRVAVAVLRKFRD--EFAPATAPDAPVIVTQRGTRMSPREV 250

Query: 244 QRYIRQLRRYLGL---PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           Q     L+RYL L   P+  T H LRHS+ATHLL+ G DLR +Q +LGH +L+TTQ+YT+
Sbjct: 251 QL---MLKRYLALAELPMDLTPHKLRHSYATHLLNAGADLRLVQELLGHAQLATTQVYTH 307

Query: 301 VNSKNGGDWMMEIYDQTHP 319
           V+       + EIY + HP
Sbjct: 308 VSVAR----LKEIYAKAHP 322


>gi|289672837|ref|ZP_06493727.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           syringae FF5]
 gi|330900733|gb|EGH32152.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           japonica str. M301072PT]
 gi|330941149|gb|EGH44028.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           pisi str. 1704B]
 gi|330976605|gb|EGH76649.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 299

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 149/305 (48%), Gaps = 19/305 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +  +L  ER +S  TL++Y  D  + L +      +K  + +   L    +R+F +++  
Sbjct: 8   YCMHLRSERQVSPHTLEAYRRDLGKVLAYC-----QKAQLSSWSDLDIQHLRSFTARQHQ 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q    RSL R LS ++ F KYL +  I        +   K    LP+ L+  +   L+D 
Sbjct: 63  QGQSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDG 122

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +     E  ++  R+ AIL LLY  GLR+SE   L    +      +++ GKG K R++
Sbjct: 123 GV-----EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVL 177

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLS 259
           P+    R+A+  +  L    L       +F   +GK L P   Q  ++    R LG  L 
Sbjct: 178 PVGSKARQALEVWLPLRA--LTHPQDDAVFVSQQGKRLGPRAIQVRLKAAGERELGQNLH 235

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +YD  HP
Sbjct: 236 P--HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAHP 289

Query: 320 SITQK 324
              +K
Sbjct: 290 RAKRK 294


>gi|227535113|ref|ZP_03965162.1| site-specific recombinase XerD [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227187254|gb|EEI67321.1| site-specific recombinase XerD [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 298

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 148/298 (49%), Gaps = 14/298 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + + LE+ER  S  T+ +Y  D R+F  FL    +        R +   +++ +++    
Sbjct: 7   FQEYLEVERQYSPETVTAYLSDLREFQAFL----KANGGFTDFRHVDDLDVQTYLTDLNK 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQALTLVD 139
           Q +   S+ R +S ++SF +YL +  +  + N   +  LKK +  LP+   E +   L  
Sbjct: 63  QDLARTSIARKISSLRSFYRYLTRIDVV-KRNPFELVELKKQHHHLPQFFYEAEIQELFK 121

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            V   T      +D RN A+L +LYG G+R+SE   LT   +  + + L I GKG+K R 
Sbjct: 122 TVAGKTP-----LDQRNRALLEVLYGTGIRVSECAKLTLNQVDFNTALLLIHGKGNKDRY 176

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           VP     ++A+  Y       L    Q     +F    G+P+     +  + QL +   L
Sbjct: 177 VPFGQYAQQALRTYLKDGRQVLMAKSQAQHRYVFVNQYGRPITSRGIEYILDQLIKQTTL 236

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
             +   H LRHSFATH+L +G DLR++Q +LGH  LSTTQIYT+V   +  +  M+ Y
Sbjct: 237 TANIHPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYY 294


>gi|302525185|ref|ZP_07277527.1| tyrosine recombinase XerC [Streptomyces sp. AA4]
 gi|302434080|gb|EFL05896.1| tyrosine recombinase XerC [Streptomyces sp. AA4]
          Length = 307

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 147/301 (48%), Gaps = 7/301 (2%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            + ++L +ERGLS  T+++Y  D    L F     E++   +    L  T++RA+++ +R
Sbjct: 11  GYERHLSLERGLSPHTVRAYVGDVVSLLAFQTVGAEDR-PARRFEDLDVTQLRAWLAGQR 69

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           +   G  +L R  +  ++F  +  +  +        +   +   +LP  L  +QA  L+D
Sbjct: 70  SDGAGRTTLARRAAAARTFTAWAHRTGLLKSDPGGRLAAPRTHRTLPGVLRAEQADALMD 129

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                 + E   +  R+ A++ LLY  G+R+SE   L   ++   +  L + GKGDK R 
Sbjct: 130 ASAKGAA-ERDPVALRDRALVELLYATGIRVSELCGLDVASVDFSRRVLSVVGKGDKERT 188

Query: 200 VPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP  +P+         D  P          LF G+RGK L+P   +R + +    +    
Sbjct: 189 VPFGVPAAEALTAWLEDGRPALAGETPPKALFLGVRGKRLDPRAARRVVHEAVAAVPGAA 248

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRHS ATHLL  G DLRS+Q +LGH  L+TTQ+YT+V      D +  I+D+ H
Sbjct: 249 DMGPHGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTHVTV----DRLKAIHDRAH 304

Query: 319 P 319
           P
Sbjct: 305 P 305


>gi|288940120|ref|YP_003442360.1| tyrosine recombinase XerD [Allochromatium vinosum DSM 180]
 gi|288895492|gb|ADC61328.1| tyrosine recombinase XerD [Allochromatium vinosum DSM 180]
          Length = 297

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 153/302 (50%), Gaps = 15/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +   L +ERGLS+ TL +Y+ D R F  +L   ++E+   +T+      ++  ++++ 
Sbjct: 8   EGFADALWMERGLSRNTLTAYQSDLRAFAHWL---SQERG--RTLIAAERADLLDYLARL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q    RS  R LS ++ F ++L++R +        +   K    LP++L+E       
Sbjct: 63  AKQGRNPRSSARLLSCLRQFYQHLRRRGLIEADPSARVEAPKLGRPLPKSLSEADV---- 118

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL+          R+  +L +LY  GLR+SE ++LTP  +   Q  +RI GKG K R
Sbjct: 119 -EALLNAPDTEDARGHRDRTMLEVLYASGLRVSELVNLTPSQVSLTQGVVRILGKGGKER 177

Query: 199 IVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       + +Y     FD L       LF   R   +    F + I++     G+ 
Sbjct: 178 LVPLGEDACNWLRDYVRGPRFDILGGRASDFLFPTRRSDCMTRQAFWQLIKRYAILAGVA 237

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V  +     + +++ + 
Sbjct: 238 KPLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARER----LKQLHARH 293

Query: 318 HP 319
           HP
Sbjct: 294 HP 295


>gi|296394365|ref|YP_003659249.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296181512|gb|ADG98418.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 304

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 149/302 (49%), Gaps = 14/302 (4%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI--QTIRQLSYTEIRAFISKRRT 80
           ++L  ERG S  T+++Y  D R +        ++  T   + +  ++  ++R ++S+   
Sbjct: 10  RHLRFERGRSPNTVRAYLGDLRAYFGPAVDGNDQDDTAAHEVLGAVTIADLRGWLSEMTA 69

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     +L R  SG+K+F ++  +  +        +   K   +LP  L + QA    + 
Sbjct: 70  EGASRATLARRASGMKTFFEWAMRNGLAEHDPTARLSTPKLRRTLPHVLRQDQA----EQ 125

Query: 141 VLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            L    H+ +   A R+  IL LLYG G+R+ E   L   +I  D+    + GKGDK R 
Sbjct: 126 ALGPAPHQREGPLALRDQLILELLYGTGMRVGELCGLDLDDIDQDRRLATVLGKGDKQRA 185

Query: 200 VPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ-LRRYLGLP 257
           VP       A+  +  D  P  +       L  G RGK L+P   +R +++ +    GLP
Sbjct: 186 VPFGAKAADALAAWLRDGRPALVGPRSGAALLLGARGKRLDPRTARRVVQERVAEEAGLP 245

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            S   H LRHS ATHLL  G DLR +Q ILGH  L+TTQIYT+V+ +     + ++++Q 
Sbjct: 246 -SLGPHGLRHSAATHLLEGGADLRVVQEILGHSSLATTQIYTHVSVER----LRKVHEQA 300

Query: 318 HP 319
           HP
Sbjct: 301 HP 302


>gi|108760213|ref|YP_631219.1| phage integrase family site specific recombinase [Myxococcus
           xanthus DK 1622]
 gi|34222772|sp|P59818|XERC_MYXXA RecName: Full=Tyrosine recombinase xerC
 gi|122981099|sp|Q1D804|XERC_MYXXD RecName: Full=Tyrosine recombinase xerC
 gi|27804888|gb|AAO22922.1| integrase/recombinase [Myxococcus xanthus]
 gi|108464093|gb|ABF89278.1| site-specific recombinase, phage integrase family [Myxococcus
           xanthus DK 1622]
          Length = 300

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 104/309 (33%), Positives = 153/309 (49%), Gaps = 27/309 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +  +LE E+G S  T+++Y  D    L+    Y  E++ +  +   ++  IR ++   
Sbjct: 9   EKFRAHLEDEKGSSPHTVRNYLID----LVDFERYLVERMKLSLLSG-THAAIRGYLGTL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            T      S  R L+ IKSF KYL ++K+   S    +++ K   +LP+ L  ++   ++
Sbjct: 64  STDH-APASRARRLASIKSFYKYLVRQKLLPASPAKLVKSPKLPKTLPKVLPVEEVFAIL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D   + T      +  R+ AIL LLYG GLRISE   L   +I      +R+ GKG K R
Sbjct: 123 DMPDVKT-----VLGLRDRAILELLYGGGLRISELCGLDLLDIDRSGRIVRVMGKGSKER 177

Query: 199 IVPL-LPSVRKAILEYYDLCPFDLNLNI---QLP--LFRGIRGKPLNPGVFQRYIRQLRR 252
           +VP+   S+R   LE Y     +L   I   Q P  +F   RG  L P    R++     
Sbjct: 178 LVPVNAQSIRA--LEAYLARRGELLATIRKDQAPEAMFLNFRGGRLTPRSIARHLDTYVL 235

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW--M 310
              L    + H +RHSFATHLL  G D+RSIQ +LGH  LSTTQ YT V       W  +
Sbjct: 236 KCALTRKVSPHAMRHSFATHLLGGGADIRSIQELLGHSSLSTTQRYTQVT------WEQL 289

Query: 311 MEIYDQTHP 319
            ++YD  HP
Sbjct: 290 QQVYDSAHP 298


>gi|301382613|ref|ZP_07231031.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           tomato Max13]
 gi|302063357|ref|ZP_07254898.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           tomato K40]
 gi|302133632|ref|ZP_07259622.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|331017919|gb|EGH97975.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 290

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 149/303 (49%), Gaps = 21/303 (6%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           +L  ER +S  TL++Y  D  + L +      +K  + +   L    +R+F +++  Q  
Sbjct: 2   HLRSERQVSPHTLEAYRRDLSKVLAYC-----QKARLSSWNDLDIQHLRSFTARQHQQGQ 56

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
             RSL R LS ++ F KYL +  +        +   K    LP+ L+  +   L+D  + 
Sbjct: 57  SSRSLARMLSAVRGFYKYLNREGLCQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGV- 115

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
               E  ++  R+ AI+ LLY  GLR+SE   L    +      +++ GKG K R++P+ 
Sbjct: 116 ----EDDFLAHRDQAIMELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVG 171

Query: 204 PSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLSTT 261
              R+A+  +    P     N Q   +F   +GK L P   Q  I+    R LG  L   
Sbjct: 172 SKARQALETW---LPLRALTNPQDDAVFVSQQGKRLGPRAVQLRIKTAGERELGQNLHP- 227

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            H LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +YD  HP  
Sbjct: 228 -HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAHPRA 282

Query: 322 TQK 324
            +K
Sbjct: 283 KRK 285


>gi|319792815|ref|YP_004154455.1| tyrosine recombinase xerd [Variovorax paradoxus EPS]
 gi|315595278|gb|ADU36344.1| tyrosine recombinase XerD [Variovorax paradoxus EPS]
          Length = 303

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 164/308 (53%), Gaps = 22/308 (7%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E   ++  L +E GLSK TL +Y  D   F  +L       I + T ++   ++++A++ 
Sbjct: 11  EIDEFIDALWLEDGLSKNTLAAYRRDLALFSQWLG-KQRSGIALDTAQE---SDVQAYMG 66

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRA---LNEK 132
            R + K    S  R L+  K + ++ L++R+IT +  I     L  +  +PRA   L+EK
Sbjct: 67  VRLSTKGKATSANRRLTVFKRYYRWALRERRITADPTI----RLAPARQMPRAIKTLSEK 122

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q    VD++L     ET  +  R+ A+L ++Y  GLR+SE ++L   ++  +   LR+ G
Sbjct: 123 Q----VDDLLAAPDVETP-LGLRDRAMLEVMYASGLRVSELVALKVIDMSLNDGVLRVLG 177

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG+K R+VP     R+ I  Y +   P  L+      LF   RG  +   +F   +++  
Sbjct: 178 KGNKERLVPFGGEARRWIERYLEESRPVILDGQQTPDLFVTARGAGMTRVMFWIIVKKQA 237

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+ +  + HTLRH+FATHLL++G DLR++Q +LGH  +STT IYT+V  +     + 
Sbjct: 238 AAAGIHVPLSPHTLRHAFATHLLNHGVDLRAVQLLLGHADISTTTIYTHVARER----LK 293

Query: 312 EIYDQTHP 319
           +++   HP
Sbjct: 294 QLHAAHHP 301


>gi|284991421|ref|YP_003409975.1| tyrosine recombinase XerD [Geodermatophilus obscurus DSM 43160]
 gi|284064666|gb|ADB75604.1| tyrosine recombinase XerD [Geodermatophilus obscurus DSM 43160]
          Length = 315

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 149/310 (48%), Gaps = 23/310 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L +L +ERGL+  T+ SY  D R++  FL     +   ++ + +++ +++  F++  R
Sbjct: 15  GYLDHLTVERGLAANTISSYRRDLRRYTEFL-----DAAGVRGLGEVAESDVAGFLAALR 69

Query: 80  T-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
                   +   S  R++  ++   ++     +  +     +R    +  LP+A+  +  
Sbjct: 70  QGDDDHPPLSATSAARAVVAVRGLHRFALLDGLVPDDVAHEVRPPSPARRLPKAIPVESV 129

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           + L++          + +  R+ A+L LLYG G RISEA+ L   ++   QS +R+ GKG
Sbjct: 130 VALIEAA--GALEGPRGL--RDRALLELLYGTGARISEAVGLAVDDLDRGQSVVRLAGKG 185

Query: 195 DKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
            K RIVP+     +A+ +Y       L            LF   RG  L+       +R 
Sbjct: 186 GKQRIVPVGSYALRAVEDYLVRARPALAAAGRGGVRGGALFLNARGGSLSRQSAWAILRT 245

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                GL    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQ+YT V      D 
Sbjct: 246 AAERAGLTAEVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTV----DR 301

Query: 310 MMEIYDQTHP 319
           + E+Y  +HP
Sbjct: 302 LREVYASSHP 311


>gi|326803545|ref|YP_004321363.1| phage integrase, N-terminal SAM domain protein [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651486|gb|AEA01669.1| phage integrase, N-terminal SAM domain protein [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 309

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 156/312 (50%), Gaps = 11/312 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           R+   + ++ E+  S  TL++Y  D   F+ FL     +++ I    QLSY +IR ++S 
Sbjct: 7   RKRLKEYIKDEKHYSDQTLKAYLSDFDDFISFL----RDELLISDFEQLSYRDIRLYLSH 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            + + +  +SL R LS +++       + +  ++    ++  K    LP    E +    
Sbjct: 63  LQRKGLSRKSLARHLSSLRTAFNRFLDQGLVKDNPFTYVQAAKTGLRLPDFFYEAEL--- 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
             + L   +   + +D RN A+L  LY  G R+SE  +LT   +    S   + GKG K 
Sbjct: 120 --DPLFEAAKGPRALDKRNIALLEFLYATGARVSECTNLTITQVDLKNSIALLHGKGSKD 177

Query: 198 RIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R VP     +KA+ EY D   P  L  +    +F   RG+ L P      +  L +    
Sbjct: 178 RYVPFGSYCKKALEEYLDSGRPVLLKGHDHEYIFVNSRGEALTPSGVTYILNDLVKKSAS 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            L    H LRHSFATHLL++G D+R++Q +LGH  LS+TQIYT+++ ++  +  ++ + +
Sbjct: 238 NLDIHPHKLRHSFATHLLNHGADIRTVQELLGHSSLSSTQIYTHMSKESLRNNYLKYFPR 297

Query: 317 T-HPSITQKDKK 327
             H  + ++DK+
Sbjct: 298 AKHSDVHKEDKE 309


>gi|308233786|ref|ZP_07664523.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829]
 gi|328943765|ref|ZP_08241230.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829]
 gi|327491734|gb|EGF23508.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829]
          Length = 319

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 97/310 (31%), Positives = 159/310 (51%), Gaps = 29/310 (9%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           +F+ +KE   +L  + IERG S  TL SY+ D   +L FL  +  +     T R++    
Sbjct: 3   TFDTIKE--EYLNYVLIERGYSVHTLHSYDHDLTLYLSFLQSHDIDDPAYIT-REI---- 55

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           + A+I+    + +   +++R++S IK F K++   +I       N++  KKS  LP  L 
Sbjct: 56  VEAYIAHLFHEGMSSSTVQRAVSSIKGFHKFMVVEQICENHPTTNLKLPKKSFHLPDVLT 115

Query: 131 EKQALTLVDNV----LLHT---------SHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           + Q + L+D+     LL           S + +    R+ AIL +LYGCGLR+SE   L 
Sbjct: 116 QDQIIHLLDDPFKPQLLPAPKLTARKALSLKPQACFYRDKAILEMLYGCGLRVSELCGLN 175

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRG 232
             +++     +R+ GKG K R+VP L +   A+  Y + C     L    P     +F  
Sbjct: 176 QGDVLVSDELVRVFGKGSKERLVPCLGT---ALESYQNYCTKWRALLACSPKTTDAVFLS 232

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +RG  ++       + +   Y+G+      HTLRHS+ATH+L  G +LR +Q +LGH  +
Sbjct: 233 VRGTRISRQAVFSLVERYGSYVGIK-GLHPHTLRHSYATHMLEGGMNLRIVQELLGHASI 291

Query: 293 STTQIYTNVN 302
           STTQ+YT+++
Sbjct: 292 STTQLYTHID 301


>gi|121611464|ref|YP_999271.1| phage integrase family protein [Verminephrobacter eiseniae EF01-2]
 gi|121556104|gb|ABM60253.1| phage integrase family protein [Verminephrobacter eiseniae EF01-2]
          Length = 378

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 151/318 (47%), Gaps = 27/318 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L++L +E+ L+  +L  Y  D  +   F A  +   +      QL+   IR F+++ 
Sbjct: 24  QRYLEHLRVEKRLAARSLTLYRLDLEKLARFAAGLSLPLL------QLTDAHIRRFVAQM 77

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            +     R +   LSG + F  +  ++ +   + +L +R  K    LP+AL   QA+ L 
Sbjct: 78  HSAGRSGRGIALILSGWRGFFIWAGRQGLIGRNPVLGIRAPKSPKPLPKALGVDQAMRLA 137

Query: 139 DNVLLHT--SHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQS-------- 186
           D        +    W+  R++A+  LLYG GLR  E   L   P    + Q         
Sbjct: 138 DFDGAAGAATEADIWLQIRDAAMAELLYGSGLRAGELAGLDAVPNADTERQGRGWVDLQA 197

Query: 187 -TLRIQGKGDKIRIVPLLPSVRKAILEYYDL--CPFDLNLNIQLPL--FRGIRGKPLNPG 241
             + + GKG K R VP+  +   A+  +  L   PF      +L    F G RG  L   
Sbjct: 198 GEVHVLGKGSKRRSVPMGRAASAALRAWLALRAKPFGAAGAARLDAALFVGRRGARLTTL 257

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              R +RQ  +  GLP     H LRHSFA+HLL + GDLR++Q +LGH  +++TQ+YT +
Sbjct: 258 SIWRRLRQRSQRAGLPSPVHPHMLRHSFASHLLQSSGDLRAVQELLGHASITSTQVYTRL 317

Query: 302 NSKNGGDWMMEIYDQTHP 319
           + ++    +  +YD THP
Sbjct: 318 DFQH----LARVYDATHP 331


>gi|256847174|ref|ZP_05552620.1| tyrosine recombinase XerC [Lactobacillus coleohominis 101-4-CHN]
 gi|256715838|gb|EEU30813.1| tyrosine recombinase XerC [Lactobacillus coleohominis 101-4-CHN]
          Length = 312

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 150/303 (49%), Gaps = 15/303 (4%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           ER L+  T+Q YE D R F  FL         ++  RQ    +I+A+++     +    +
Sbjct: 20  ERQLAATTVQGYENDLRMFRKFLTAKKHWLGWLKIKRQ----DIQAYLTHLNDLRRQWTT 75

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           + R L+ +++F  +L    +   +    +R    S SLPR   E +      N L   + 
Sbjct: 76  INRELASLRTFYNFLLTNGLVVANPFDEVRMKHHSRSLPRYFYEPEM-----NALFKAAD 130

Query: 148 -ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
            + + +D RN AI+ LLY  G+R+SE  SL+ + I  D   + + GKGDK R VP     
Sbjct: 131 GDGRPLDFRNRAIIELLYATGMRVSECASLSLEQINWDVQMILVHGKGDKERYVPFGHYA 190

Query: 207 RKAILEYYDLCP---FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           + A+  Y   C     D        +F    GKP+     +  + Q+ +   L +    H
Sbjct: 191 KVALERYLHECREPLMDKYHEEHRRVFINHYGKPITSEGIEYVLNQVVKKSSLNIHIHPH 250

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            LRHSFAT +L+NG D+RS+Q +LGH  LSTTQIYT+V  +N     M+++ +    +T+
Sbjct: 251 MLRHSFATAMLNNGADIRSVQELLGHSSLSTTQIYTHVTRENLQKTYMKLFPRA--KMTK 308

Query: 324 KDK 326
           +D+
Sbjct: 309 EDQ 311


>gi|228922585|ref|ZP_04085885.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837014|gb|EEM82355.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 299

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 161/308 (52%), Gaps = 25/308 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R +++  
Sbjct: 8   QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYLTTL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137
             +K+  +S+ R +S ++S  ++L  R+   + N   + +L KK  S+P+ L  ++    
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLI-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               L   S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG K 
Sbjct: 119 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176

Query: 198 RIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           R +P     + +++ Y +      +   D + ++   +F   +G PL     +  + ++ 
Sbjct: 177 RYIPFGSYAQDSLITYIENGRKQLVNKTDEDSHM---VFLNAKGTPLTSRGVRYVLNEII 233

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +   L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+     + + 
Sbjct: 234 KKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----ERLR 289

Query: 312 EIYDQTHP 319
            +Y + HP
Sbjct: 290 SVYMKHHP 297


>gi|88706916|ref|ZP_01104615.1| Tyrosine recombinase xerD [Congregibacter litoralis KT71]
 gi|88698838|gb|EAQ95958.1| Tyrosine recombinase xerD [Congregibacter litoralis KT71]
          Length = 302

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 152/303 (50%), Gaps = 18/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  + +E+GLS+ TL +Y  D + F  + A   +   T     Q+  ++I A+++  
Sbjct: 14  ESYLDAVWMEKGLSENTLAAYRRDLQAFARW-ALSRQRTAT-----QIERSDIEAYLASL 67

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +K   RS  R+LS ++ F +YL +         L + + +    LP+ L+E      V
Sbjct: 68  LEKKSSPRSAARALSCLRGFYRYLLRSGQLDTDPTLGLDSPRLGRPLPKTLSE------V 121

Query: 139 D-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           D + LL        I  R+  +L LLY CGLR+SE   LT   +  +Q  LRI GKG K 
Sbjct: 122 DVDALLKAPKLDDPIGFRDRCMLELLYACGLRVSELTGLTLSQLSLNQGVLRIVGKGGKE 181

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  +  D+ P  L       LF   R + +    F   I+Q     G+
Sbjct: 182 RLVPIGEEALHWLQRFLRDVRPELLGETSSDVLFPSRRAREMTRQTFWHRIKQHAMTAGI 241

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++ +
Sbjct: 242 RKPISPHVLRHAFATHLVNHGADLRVVQLLLGHSDLSTTQIYTHVARQR----LQSLHAK 297

Query: 317 THP 319
            HP
Sbjct: 298 HHP 300


>gi|289426394|ref|ZP_06428137.1| phage integrase, N-terminal SAM domain protein [Propionibacterium
           acnes SK187]
 gi|289153122|gb|EFD01840.1| phage integrase, N-terminal SAM domain protein [Propionibacterium
           acnes SK187]
 gi|313773500|gb|EFS39466.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL074PA1]
 gi|313807979|gb|EFS46460.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL087PA2]
 gi|313811552|gb|EFS49266.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL083PA1]
 gi|313819548|gb|EFS57262.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL046PA2]
 gi|313822129|gb|EFS59843.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL036PA1]
 gi|313823637|gb|EFS61351.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL036PA2]
 gi|313825961|gb|EFS63675.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL063PA1]
 gi|313831292|gb|EFS69006.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL007PA1]
 gi|313834903|gb|EFS72617.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL056PA1]
 gi|314924714|gb|EFS88545.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL036PA3]
 gi|314962115|gb|EFT06216.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL002PA2]
 gi|314974168|gb|EFT18264.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL053PA1]
 gi|314976542|gb|EFT20637.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL045PA1]
 gi|314979003|gb|EFT23097.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL072PA2]
 gi|314984361|gb|EFT28453.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL005PA1]
 gi|314986551|gb|EFT30643.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL005PA2]
 gi|314990910|gb|EFT35001.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL005PA3]
 gi|315081228|gb|EFT53204.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL078PA1]
 gi|315083594|gb|EFT55570.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL027PA2]
 gi|315087111|gb|EFT59087.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL002PA3]
 gi|315095307|gb|EFT67283.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL038PA1]
 gi|327328430|gb|EGE70192.1| putative tyrosine recombinase XerC [Propionibacterium acnes
           HL096PA2]
 gi|327329704|gb|EGE71460.1| putative tyrosine recombinase XerC [Propionibacterium acnes
           HL096PA3]
 gi|327444217|gb|EGE90871.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL043PA2]
 gi|327444904|gb|EGE91558.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL043PA1]
 gi|327446389|gb|EGE93043.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL013PA2]
 gi|328752379|gb|EGF65995.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL020PA1]
 gi|328760018|gb|EGF73600.1| putative tyrosine recombinase XerC [Propionibacterium acnes
           HL099PA1]
 gi|332675950|gb|AEE72766.1| tyrosine recombinase XerC [Propionibacterium acnes 266]
          Length = 315

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 138/285 (48%), Gaps = 9/285 (3%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T++ Y  D    +     + ++     T+ ++  +++RA+++  R       +++R  S 
Sbjct: 38  TIRGYRADLIDLMGHAHSHGDD-----TLGRIGTSQVRAWLADTRVAGASAATMQRRWSA 92

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
            + F ++     + +      + + K    LP  L   QA  ++D  +    H+     A
Sbjct: 93  ARVFFRWAANEGLISADPTTALNSAKVPKRLPATLGVDQARHILDEAVAQARHDESPHGA 152

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R++AIL +LYG GLR+ E   L   ++   + T+++ GKGDK R VP+     +AI  + 
Sbjct: 153 RDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVKVTGKGDKERTVPMGAPALRAIDTWL 212

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                 +  +    LF G RG+ ++  V +R +    R          H LRH+ ATHLL
Sbjct: 213 PRREEWVGPHSGQALFLGARGRRIDQRVVRRVVHTHLRAEPDSPDLGPHGLRHAMATHLL 272

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
             G DLR++Q ILGH  L+TTQIYT+V+++     +   + Q HP
Sbjct: 273 EGGADLRTVQDILGHESLATTQIYTHVSTER----LRTAFRQAHP 313


>gi|288803482|ref|ZP_06408914.1| integrase/recombinase XerD [Prevotella melaninogenica D18]
 gi|288334092|gb|EFC72535.1| integrase/recombinase XerD [Prevotella melaninogenica D18]
          Length = 314

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/280 (31%), Positives = 145/280 (51%), Gaps = 12/280 (4%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L++E+G S  TL +Y  D  +   +LA    E++ +  ++        AFIS      IG
Sbjct: 18  LKLEKGYSANTLDAYMRDVDKLFRYLAV---EQVDVLDVKLEDLEYFAAFISD---LGIG 71

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            RSL R LSG++ F ++L             + + K+ + LP  L+  +   L   + L 
Sbjct: 72  PRSLARILSGVRQFYRFLVIDGYLEVDPTELLESPKQPDHLPEVLSTAEVDLLEQAIDL- 130

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
               +KW   RN AI+ +L+ CGLR+SE  +L   N+  ++  +R+ GKG K R+VP+ P
Sbjct: 131 ----SKWEGHRNRAIIEVLFSCGLRVSELTNLKLSNLYIEEQYIRVMGKGSKERLVPISP 186

Query: 205 SVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
                +  ++ D     +    +  +F   RG+ L   +    I++     G+  + + H
Sbjct: 187 RALDELNYWFADRNVMKIKPGEEDYVFLNRRGQHLTRTMILIMIKRYAVEAGIKKTISPH 246

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           TLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++
Sbjct: 247 TLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDT 286


>gi|229543943|ref|ZP_04433002.1| tyrosine recombinase XerD [Bacillus coagulans 36D1]
 gi|229325082|gb|EEN90758.1| tyrosine recombinase XerD [Bacillus coagulans 36D1]
          Length = 297

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 161/304 (52%), Gaps = 17/304 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISK 77
           ++++  + +E+GL++ T+ SY+ D   +L +L     +K+ + T   +++   I  F++ 
Sbjct: 6   KDFMHFMIVEKGLAENTIASYKRDLHSYLRYL-----QKVELVTSWNEVTRFHILHFLNF 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            + Q    +++ R ++ I+SF ++L + K   +   +++   K   +LP+ L+ ++    
Sbjct: 61  LKQQGKSSKTIARHVASIRSFHQFLLREKFAGQDPTVHIETPKPERTLPKVLSVQE---- 116

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           V+ +L     +T  +  R+ A+L LLY  G+R+SE   L   ++      ++  GKGDK 
Sbjct: 117 VEALLAAPKGDTP-LHMRDGAMLELLYATGMRVSEMTGLNLDDLHLSMGFIKCIGKGDKE 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           RI+P+  +   A+  Y       L    N    LF    G  L+   F + ++ L +   
Sbjct: 176 RIIPIGRTASAALERYLKEGRPKLVSKTNRTDALFLNHHGARLSRQGFWKILKALAKKAN 235

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFATHL+ NG DLR++Q +LGH  +STTQIYT+V+       + ++Y 
Sbjct: 236 IEKDITPHTLRHSFATHLIENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKDVYA 291

Query: 316 QTHP 319
           + HP
Sbjct: 292 KFHP 295


>gi|319425289|gb|ADV53363.1| tyrosine recombinase XerD [Shewanella putrefaciens 200]
          Length = 300

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 97/300 (32%), Positives = 152/300 (50%), Gaps = 16/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L   +GLS  TL +Y  D R F         ++    T+ + +  ++R++++ R  
Sbjct: 14  FLDDLWSSKGLSDNTLSAYRTDLRHF------DRHQQRHGTTLLEATAADVRSYLALRLE 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     S  R LS ++ F  YL   K      +  + + K +  LP +L+E Q    VD 
Sbjct: 68  QHFARTSSARLLSSLRRFYTYLLLTKQIAVDPMALIESPKLTRHLPHSLSESQ----VDR 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +L   + +   ++ R+ A+L LLY  GLR+SE + LT + +   Q  +RI GKG K R+V
Sbjct: 124 LLAEPNVDDP-VECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLV 182

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           PL       +  Y      +L  + Q  + F   RG+ +    F   I+      G+  +
Sbjct: 183 PLGELAVTEVEAYLKFARQELLGHKQSDVVFPSNRGQMMTRQTFWHRIKLYALRAGIETA 242

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ Q HP
Sbjct: 243 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARAR----LQELHQQHHP 298


>gi|303245447|ref|ZP_07331731.1| tyrosine recombinase XerD [Desulfovibrio fructosovorans JJ]
 gi|302493296|gb|EFL53158.1| tyrosine recombinase XerD [Desulfovibrio fructosovorans JJ]
          Length = 307

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 155/316 (49%), Gaps = 19/316 (6%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N  P I S   +   +N+L++L + +GL++ ++++Y  D   FLIFL    +   +++T+
Sbjct: 5   NTSPAIPSHPWV---ENYLEHLIVAKGLAEHSIKAYSTDITDFLIFL---NDHAGSLETV 58

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
                  +  ++   R++ +  RSL R LS ++ F  Y        ES    + N K   
Sbjct: 59  TD---DTLFLYLMHLRSRGLASRSLARHLSALRGFFAYAAGEGWLPESPAALIENPKLPR 115

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            LP  L+      L+D     T      +  R+  +L LLY  GLR+SE + L   +   
Sbjct: 116 LLPDVLSRDDVARLLDAPDTATP-----LGYRDRTMLELLYAAGLRVSELIGLALTDFDA 170

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
               LR+ GKG K R++P+    ++ +  Y        +   Q  +F    G+ L+    
Sbjct: 171 QAGLLRVFGKGSKERLIPIHALAQEFLSTYIQTIRGAFHPKEQF-VFLNRSGRGLSRQAV 229

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            + I++     G+ L  + H+LRHSFATHLL  G DLR++Q++LGH  +S T+IYT+V +
Sbjct: 230 WKGIKRHALVAGISLHISPHSLRHSFATHLLDGGADLRTVQTLLGHADISATEIYTHVQA 289

Query: 304 KNGGDWMMEIYDQTHP 319
           +     ++ ++   HP
Sbjct: 290 ER----LLAVHRAHHP 301


>gi|303241573|ref|ZP_07328073.1| tyrosine recombinase XerD [Acetivibrio cellulolyticus CD2]
 gi|302590891|gb|EFL60639.1| tyrosine recombinase XerD [Acetivibrio cellulolyticus CD2]
          Length = 294

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 98/306 (32%), Positives = 155/306 (50%), Gaps = 28/306 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  LE ++ LS  TLQSY  D  Q++ +L      +I +Q I   + T +  ++   + 
Sbjct: 8   FLTFLEKDKRLSLNTLQSYRRDIEQYITYL-----NEIKLQNISNTNKTTVITYLLHLQK 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     ++ R+L+ I+SF +YL K  + +      + + K    LP+ L+ K+   L+D 
Sbjct: 63  KGRATSTISRNLASIRSFYQYLTKNGVISGDPTEELESPKVEKKLPQILSTKEVELLLD- 121

Query: 141 VLLHTSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                  + K  D    R+ A+L LLY  G+R+SE + L   +I  D   ++   KG + 
Sbjct: 122 -------QPKCDDLKGFRDKAMLELLYATGIRVSELICLNVLDINLDMGFIKC-NKGTRE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQL----PLFRGIRGKPLNPGVFQRYIRQLRRY 253
           R++P+     +A+ EY        NL IQ      LF  + GK L    F + I+Q +  
Sbjct: 174 RMIPIGSLSIQALNEY---LAKSRNLLIQRSDEKALFVNVNGKRLTRQGFWKIIKQYKNL 230

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    T HTLRHSFA HLL NG DLRSIQ +LGH  +S+TQ+Y  +      + + E+
Sbjct: 231 AKINKDITPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQVYAQI----AKNRIKEV 286

Query: 314 YDQTHP 319
           Y +THP
Sbjct: 287 YKKTHP 292


>gi|289428621|ref|ZP_06430304.1| phage integrase, N-terminal SAM domain protein [Propionibacterium
           acnes J165]
 gi|295131071|ref|YP_003581734.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes SK137]
 gi|289158019|gb|EFD06239.1| phage integrase, N-terminal SAM domain protein [Propionibacterium
           acnes J165]
 gi|291376498|gb|ADE00353.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes SK137]
          Length = 300

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 138/285 (48%), Gaps = 9/285 (3%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T++ Y  D    +     + ++     T+ ++  +++RA+++  R       +++R  S 
Sbjct: 23  TIRGYRADLIDLMGHAHSHGDD-----TLGRIGTSQVRAWLADTRVAGASAATMQRRWSA 77

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
            + F ++     + +      + + K    LP  L   QA  ++D  +    H+     A
Sbjct: 78  ARVFFRWAANEGLISADPTTALNSAKVPKRLPATLGVDQARHILDEAVAQARHDESPHGA 137

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R++AIL +LYG GLR+ E   L   ++   + T+++ GKGDK R VP+     +AI  + 
Sbjct: 138 RDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVKVTGKGDKERTVPMGAPALRAIDTWL 197

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                 +  +    LF G RG+ ++  V +R +    R          H LRH+ ATHLL
Sbjct: 198 PRREEWVGPHSGQALFLGARGRRIDQRVVRRVVHTHLRAEPDSPDLGPHGLRHAMATHLL 257

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
             G DLR++Q ILGH  L+TTQIYT+V+++     +   + Q HP
Sbjct: 258 EGGADLRTVQDILGHESLATTQIYTHVSTER----LRTAFRQAHP 298


>gi|83644610|ref|YP_433045.1| tyrosine recombinase XerD [Hahella chejuensis KCTC 2396]
 gi|83632653|gb|ABC28620.1| tyrosine recombinase XerD [Hahella chejuensis KCTC 2396]
          Length = 284

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 97/296 (32%), Positives = 151/296 (51%), Gaps = 16/296 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E+GLS+ T  SY CD    L+ LA +   +   +T+   S  ++ +F++ R  +   
Sbjct: 2   LWLEQGLSENTRMSYRCD----LLRLAEWLMGRG--RTLVDASREDLFSFLAVRMQKGAK 55

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R LS ++ F +YL +  +  E   L + + K    LP A++E +        LL 
Sbjct: 56  GASSARMLSTLRKFYRYLLREGVVQEDPTLRIEHPKVGRLLPGAISEMEV-----EQLLA 110

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
               ++ I+AR+  +L +LY  GLR+SE +SL    +   Q  LR+ GKG K R+ PL  
Sbjct: 111 EPDASQPIEARDKVMLEVLYASGLRVSELVSLRLYQVNLRQGVLRVVGKGGKERLTPLGE 170

Query: 205 SVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              + +  Y   + P  L       LF  +RG  +    F   I+      G+  + T H
Sbjct: 171 QAVEQLEAYIKGVRPQLLAGREDGVLFPSMRGSEMTRQTFWHRIKLYASRSGISKNITPH 230

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           TLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + +++ + HP
Sbjct: 231 TLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKAR----LQQLHSRHHP 282


>gi|187736389|ref|YP_001878501.1| integrase family protein [Akkermansia muciniphila ATCC BAA-835]
 gi|187426441|gb|ACD05720.1| integrase family protein [Akkermansia muciniphila ATCC BAA-835]
          Length = 295

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 156/302 (51%), Gaps = 15/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +++ L  E+GLS     +Y+   RQ L   A + E   T   + Q     + AF+   
Sbjct: 6   ERFIRFLAAEKGLST----AYQLSVRQTLEEFARFLEMDNT--GLAQTGIDTLSAFLRHL 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + + +   S++  +  ++ F ++L    I  +   + +   ++  SLP  L++K     V
Sbjct: 60  QDRGMARSSMRVEMVHLRIFFRWLAGTGILEKDPSVFLEMPRQGLSLPHVLDQKT----V 115

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            N+L     +   +  R+ A+L ++Y CG+R+SE ++   ++   D++ +R+ GKG+K R
Sbjct: 116 SNLLESIDIQDIPLGCRDRALLEMIYACGMRVSEIINCKLESFDKDEAFVRVLGKGNKTR 175

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+  S   A+  Y +   P  +    +  +F  +RG+PL     ++ +R+  R  GL 
Sbjct: 176 LVPVGRSALDALQMYLEKGRPKLVRTGTKSHIFLTVRGRPLTRERIRQILRERARAAGLE 235

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRHSFATHLL NG DLR IQ +LGH  +STTQIYT++  +     +  I+ + 
Sbjct: 236 QHVFPHILRHSFATHLLENGADLRIIQEMLGHADISTTQIYTHLEQQR----LNSIHHRF 291

Query: 318 HP 319
           HP
Sbjct: 292 HP 293


>gi|94264969|ref|ZP_01288740.1| Tyrosine recombinase XerC [delta proteobacterium MLMS-1]
 gi|93454572|gb|EAT04850.1| Tyrosine recombinase XerC [delta proteobacterium MLMS-1]
          Length = 339

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 144/336 (42%), Gaps = 49/336 (14%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLA------------------------FYTEE 56
           +L+ L +E+G S  T+ SY+ D R+F+                               E+
Sbjct: 12  FLRWLRVEKGYSGHTVASYQRDLREFVASAGRRSAPAPTAVGRKGRGRGRAAAAPLPAED 71

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
                 + QL  T +RAF+     +     S+ R LS ++SF ++L+K  I  +     +
Sbjct: 72  PAAELDVAQLDATRVRAFVYSLHGRNKSS-SVARKLSALRSFFRFLRKNGIINDDPAAAI 130

Query: 117 RNLKKSNSLPRALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
              K    LP  L+       VD V  LL          AR+ AIL LLY  GLR+SE  
Sbjct: 131 AAPKGEGYLPVVLS-------VDEVFSLLEMPGAGDRFAARDRAILELLYATGLRVSELA 183

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL------- 227
            L    +      +R+ GKG+K R+VP+  +   AI  Y       L             
Sbjct: 184 GLDLAQLDLADGMVRVVGKGNKERLVPMGTAAVAAIEAYLPQRQVLLRQTAGQQKEGKKA 243

Query: 228 ----PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
               PL    RG  L     +R ++      G+    + H LRHSFATHLL  G DLR +
Sbjct: 244 RGADPLLVNSRGGRLTSRSIERLVKMYAERAGIAARVSPHALRHSFATHLLEMGADLRVV 303

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           Q +LGH  LSTTQ YT++N     D +  +YDQ HP
Sbjct: 304 QELLGHASLSTTQRYTHLNL----DHLTAVYDQAHP 335


>gi|315089284|gb|EFT61260.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL072PA1]
          Length = 315

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 138/285 (48%), Gaps = 9/285 (3%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T++ Y  D    +     + ++     T+ ++  +++RA+++  R       +++R  S 
Sbjct: 38  TIRGYRADLIDLMGHAHSHGDD-----TLGRIGTSQVRAWLADTRVAGASAATMQRRWSA 92

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
            + F ++     + +      + + K    LP  L   QA  ++D  +    H+     A
Sbjct: 93  ARVFFRWAANEGLISADPTTALNSAKVPKRLPATLGVDQARHILDEAVAQARHDESPHGA 152

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R++AIL +LYG GLR+ E   L   ++   + T+++ GKGDK R VP+     +AI  + 
Sbjct: 153 RDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVKVTGKGDKERTVPMGAPALRAIDTWL 212

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                 +  +    LF G RG+ ++  V +R +    R          H LRH+ ATHLL
Sbjct: 213 PRREEWVGPHSGQALFLGARGRRIDQRVVRRVVHTHLRAEPDSPDLGPHGLRHAMATHLL 272

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
             G DLR++Q ILGH  L+TTQIYT+V+++     +   + Q HP
Sbjct: 273 EGGADLRTVQDILGHESLATTQIYTHVSTER----LRTAFRQAHP 313


>gi|86159117|ref|YP_465902.1| tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775628|gb|ABC82465.1| Tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 342

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 98/314 (31%), Positives = 145/314 (46%), Gaps = 23/314 (7%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL +E + +   L  E+  S  T ++Y+ D  Q+  +LA         Q +   S   +R
Sbjct: 10  ELPEELRRFDAYLASEKRASPHTRKAYQVDLAQYAAYLADQG------QPLVPSSPALVR 63

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F++ R+    G  SL R LS ++S  ++L +  +   +    + + K+   LP  L E+
Sbjct: 64  GFLA-RQAGAAGAVSLGRKLSALRSLYRFLVREGLAPGNPARAVASPKRPKRLPEVLPEE 122

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   LV+      +     +  R+ A L LLYG GLR+SE   L  +++      +R+ G
Sbjct: 123 EVAALVETP---DAAGEAPLALRDRAFLELLYGSGLRVSELTGLDLEDLDLAGGLVRVLG 179

Query: 193 KGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           K +K RIVP      +A+  Y D     L     +      +F   RG  L      R +
Sbjct: 180 KRNKERIVPFGAPAAEALRRYLDGARPVLAAGPDHAGAAEAVFLNFRGGRLTSRSVARRL 239

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                  GLP     H LRH FATHLL NG DLR IQ +LGH  LSTTQ YT++      
Sbjct: 240 DGWVLASGLPRHVHPHVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTHL------ 293

Query: 308 DW--MMEIYDQTHP 319
           DW  +  +YD  HP
Sbjct: 294 DWKRLAAVYDAAHP 307


>gi|332528836|ref|ZP_08404810.1| phage integrase [Hylemonella gracilis ATCC 19624]
 gi|332041695|gb|EGI78047.1| phage integrase [Hylemonella gracilis ATCC 19624]
          Length = 369

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 159/324 (49%), Gaps = 34/324 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L ++ +E+ L++ T++ Y  D  +   F       +    ++ Q+    +R +I++  
Sbjct: 40  QYLAHVRVEKRLAQRTVELYTLDLDKLGEF------ARQAGVSLLQVHSAHVRRWIAQMH 93

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                 R +   LSG + F  +L ++   T + + ++R  K +  LP+AL+   A+ L  
Sbjct: 94  AGGRSGRGIALILSGWRGFYAWLGRQGYITSNPVQDVRAPKAAKPLPKALSVDDAVRLAS 153

Query: 140 NVLLHTSHETK---------WIDARNSAILYLLYGCGLRISE--ALSLTP--------QN 180
                +  +T          W  AR++A+  LLY  GLR+SE   L + P        + 
Sbjct: 154 YRGGESGADTPQGDALDDDPWFSARDAAMTELLYSSGLRVSELTGLDVAPSEAARKAGRG 213

Query: 181 IMDDQST-LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRG 235
            +D Q+  + +QGKG K R VP+  + RKA+L++ ++    ++     + Q  LF G  G
Sbjct: 214 WLDLQAGEVEVQGKGGKRRAVPVGTAARKALLQWLEVRGQGVSAAALQDGQTALFIGRNG 273

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             L P    + +++     GL      H LRHSFA+H+L + GDLR++Q +LGH  + TT
Sbjct: 274 TRLTPQSIWQRLKRRSLLAGLATPVHPHMLRHSFASHVLQSSGDLRAVQELLGHANIGTT 333

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHP 319
           Q+YT ++ ++    +   YD  HP
Sbjct: 334 QVYTRLDFQH----LARAYDDAHP 353


>gi|170730010|ref|YP_001775443.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa M12]
 gi|167964803|gb|ACA11813.1| site-specific recombinase [Xylella fastidiosa M12]
          Length = 277

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 82/261 (31%), Positives = 133/261 (50%), Gaps = 14/261 (5%)

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           L   +++AF+S    + +  +SL+R LS  + F  +L K      +    +R  K    L
Sbjct: 31  LDRAQLQAFVSAEHRRGLSPKSLQRRLSACRGFYAWLVKSGHIAVNPAAGLRAPKALRKL 90

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           PR L+  +A++ V         +T  +  R+ A+L L Y  GLR+SE   L    +  D 
Sbjct: 91  PRILDADEAVSFV-----QIPTDTP-LGLRDRALLELFYSSGLRLSELCGLRWDGLDLDA 144

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             + + GKG + R+VP+      A+ E+   C        Q P+F G  G P++    Q 
Sbjct: 145 GLVSVLGKGSRQRVVPVGSYALSALREW---CASSGG-GAQQPVFPGRYGGPISARAVQV 200

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            I+QL +  G+      H LRHSFA+HLL + GDLR +Q +LGH  ++TTQIYT+++ + 
Sbjct: 201 RIKQLAQRQGMAKHVHPHMLRHSFASHLLESSGDLRGVQELLGHADITTTQIYTHLDFQ- 259

Query: 306 GGDWMMEIYDQTHPSITQKDK 326
              ++ ++YD  HP   +K +
Sbjct: 260 ---YLSKVYDAAHPRARRKAR 277


>gi|71274748|ref|ZP_00651036.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71901196|ref|ZP_00683299.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71164480|gb|EAO14194.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71729040|gb|EAO31168.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
          Length = 277

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 82/261 (31%), Positives = 133/261 (50%), Gaps = 14/261 (5%)

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           L   +++AF+S    + +  +SL+R LS  + F  +L K      +    +R  K    L
Sbjct: 31  LDRAQLQAFVSAEHRRGLSPKSLQRRLSACRGFYAWLVKSGHIAVNPAAGLRAPKALRKL 90

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           PR L+  +A++ V         +T  +  R+ A+L L Y  GLR+SE   L    +  D 
Sbjct: 91  PRILDADEAVSFV-----QIPTDTP-LGLRDRALLELFYSSGLRLSELCGLRWDGLDLDA 144

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             + + GKG + R+VP+      A+ E+   C        Q P+F G  G P++    Q 
Sbjct: 145 GLVSVLGKGSRQRVVPVGSYALSALREW---CASSGG-GAQQPVFPGRYGGPISARAVQV 200

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            I+QL +  G+      H LRHSFA+HLL + GDLR +Q +LGH  ++TTQIYT+++ + 
Sbjct: 201 RIKQLAQRQGMAKHVHPHMLRHSFASHLLESSGDLRGVQELLGHADITTTQIYTHLDFQ- 259

Query: 306 GGDWMMEIYDQTHPSITQKDK 326
              ++ ++YD  HP   +K +
Sbjct: 260 ---YLSKVYDAAHPRARRKAR 277


>gi|310766537|gb|ADP11487.1| Tyrosine recombinase xerD [Erwinia sp. Ejp617]
          Length = 297

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 151/303 (49%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L IER L++ T+ SY  D R    +LA      + ++         ++ F+++R
Sbjct: 8   EQFLDALWIERNLAQNTVDSYRLDLRSLGDWLAHQQLSLLNVEVF------NLQEFLAQR 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q   L+
Sbjct: 62  LEGGYKATSSARLLSAMRRLFQYLYREKLREDDPSALLSSPKLPQRLPKDLSEAQVERLL 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
               L        I+ R+ A+L LLY  GLR++E + LT  +I   Q  +R+ GKG+K R
Sbjct: 122 QAPCLEQP-----IELRDKAMLELLYATGLRVTELVGLTLSDISLRQGVVRVIGKGNKER 176

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+       I +Y +   P+ LN      LF   R K +    F   I+      G+ 
Sbjct: 177 LVPMGEEAVHWIEQYIEYGRPWLLNGQTIDVLFPSNRAKQMTRQTFWHRIKHYATLAGID 236

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q
Sbjct: 237 SDKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQ 292

Query: 317 THP 319
            HP
Sbjct: 293 HHP 295


>gi|50843000|ref|YP_056227.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           KPA171202]
 gi|50840602|gb|AAT83269.1| integrase/recombinase [Propionibacterium acnes KPA171202]
 gi|313763561|gb|EFS34925.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL013PA1]
 gi|313793954|gb|EFS41978.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL110PA1]
 gi|313801341|gb|EFS42592.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL110PA2]
 gi|313816741|gb|EFS54455.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL059PA1]
 gi|313829428|gb|EFS67142.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL063PA2]
 gi|313839938|gb|EFS77652.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL086PA1]
 gi|314914715|gb|EFS78546.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL005PA4]
 gi|314919323|gb|EFS83154.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL050PA1]
 gi|314920767|gb|EFS84598.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL050PA3]
 gi|314930647|gb|EFS94478.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL067PA1]
 gi|314954397|gb|EFS98803.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL027PA1]
 gi|314957518|gb|EFT01621.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL002PA1]
 gi|314963694|gb|EFT07794.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL082PA1]
 gi|314968478|gb|EFT12576.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL037PA1]
 gi|315079544|gb|EFT51537.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL053PA2]
 gi|315099188|gb|EFT71164.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL059PA2]
 gi|315100329|gb|EFT72305.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL046PA1]
 gi|315106859|gb|EFT78835.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL030PA1]
 gi|315108987|gb|EFT80963.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL030PA2]
 gi|327452023|gb|EGE98677.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL092PA1]
 gi|327454940|gb|EGF01595.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL087PA3]
 gi|327457774|gb|EGF04429.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL083PA2]
 gi|328755227|gb|EGF68843.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL087PA1]
 gi|328758294|gb|EGF71910.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL025PA2]
          Length = 315

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 138/285 (48%), Gaps = 9/285 (3%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T++ Y  D    +     + ++     T+ ++  +++RA+++  R       +++R  S 
Sbjct: 38  TIRGYRADLIDLMGHAHSHGDD-----TLGRIGTSQVRAWLADTRVAGASAATMQRRWSA 92

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
            + F ++     + +      + + K    LP  L   QA  ++D  +    H+     A
Sbjct: 93  ARVFFRWAANEGLISADPTTALNSAKVPKRLPATLGVDQARHILDEAVAQARHDESPHGA 152

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R++AIL +LYG GLR+ E   L   ++   + T+++ GKGDK R VP+     +AI  + 
Sbjct: 153 RDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVKVTGKGDKERTVPMGAPALRAIDTWL 212

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                 +  +    LF G RG+ ++  V +R +    R          H LRH+ ATHLL
Sbjct: 213 PRREEWVGPHSGQALFLGARGRRIDQRVVRRVVHTDLRAEPDSPDLGPHGLRHAMATHLL 272

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
             G DLR++Q ILGH  L+TTQIYT+V+++     +   + Q HP
Sbjct: 273 EGGADLRTVQDILGHESLATTQIYTHVSTER----LRTAFRQAHP 313


>gi|254374937|ref|ZP_04990418.1| site specific recombinase XerD [Francisella novicida GA99-3548]
 gi|151572656|gb|EDN38310.1| site specific recombinase XerD [Francisella novicida GA99-3548]
          Length = 292

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/300 (31%), Positives = 147/300 (49%), Gaps = 18/300 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L NL +E GLS+ T+ SY  D    L FL  Y  +   I     L + ++ AFIS R  
Sbjct: 8   FLDNLWLEHGLSQNTISSYRTD----LKFLQNYFAKTDLIS----LDFEQLYAFISYRSK 59

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                RS  R +S ++ F  +L     T  +    +   K +  LP+ + E         
Sbjct: 60  NGYSSRSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDV-----E 114

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL     T+ +  R+ A+L L+Y  GLR+SE + L   +I  +   +++ GKG K RIV
Sbjct: 115 RLLQAPDMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIV 174

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+     + + +Y+      L+ N  +  +F     K +    F   I+      G+   
Sbjct: 175 PIGEYALEYLQKYFAEARMSLSKNFKEKAVFISKHTKRITRQSFWHRIKNYALIAGINTD 234

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLRS+Q +LGH  +STT IYT+++       + EIY + HP
Sbjct: 235 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR----LQEIYQKHHP 290


>gi|297626543|ref|YP_003688306.1| Site-specific recombinase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296922308|emb|CBL56880.1| Site-specific recombinase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 331

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 146/311 (46%), Gaps = 22/311 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA---FYTEEKITIQTIRQLSYTEIRAFI 75
           +++L +L +ERGLS  T+ +Y  D  ++L  L+        +IT   +        R   
Sbjct: 29  EDYLDHLGVERGLSPNTVAAYRRDLTRYLRHLSSRGIDDPSRITTADVTSFEEELSRGDA 88

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           S +    +   S+ R++  ++ F  +  +  +   +    +   +    LP+AL   +  
Sbjct: 89  SHK---ALAPSSVGRAVVAVRMFHGFAAREGLVDHNVAAALHPPRAGKRLPKALGVDEVA 145

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----MDDQSTLRIQ 191
            L+D++   T      I  R++A+  +LYG G RISEALSL   ++     D    LR+ 
Sbjct: 146 RLIDSIERQTP-----IGLRDAALFEVLYGTGARISEALSLDVDDLTRVLADPDGPLRVV 200

Query: 192 GKGDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           GKG+K R+VPL    R A+  +         +        LF   RG  L+       +R
Sbjct: 201 GKGNKERVVPLGSYARSAVQAWLVRGRPALAERAREFTPALFLNTRGARLSRQSAWEALR 260

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
              R  G+      H+LRHSFATHLL  G D+R +Q +LGH  +STTQIYT V ++    
Sbjct: 261 TRARQAGITADIGPHSLRHSFATHLLDGGADIRVVQELLGHASVSTTQIYTEVTAQQ--- 317

Query: 309 WMMEIYDQTHP 319
            + E+Y  + P
Sbjct: 318 -LREVYSSSFP 327


>gi|226946779|ref|YP_002801852.1| site-specific tyrosine recombinase XerC [Azotobacter vinelandii DJ]
 gi|259710429|sp|C1DJ58|XERC_AZOVD RecName: Full=Tyrosine recombinase xerC
 gi|226721706|gb|ACO80877.1| tyrosine recombinase XerC [Azotobacter vinelandii DJ]
          Length = 299

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 96/310 (30%), Positives = 148/310 (47%), Gaps = 29/310 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L  ER +S+ TL  Y  D  +          E+  +     L    +R  I++   
Sbjct: 8   FLDHLRNERQVSQHTLDGYRRDLAKVHAHC-----EREGLDAWSALDAGRLRRLIARLHL 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q    RSL R LS ++ F +YL +           +   K    LPR L+  +   L+D 
Sbjct: 63  QGHSSRSLARLLSALRGFYRYLLREGRCRHDPAAGLSPPKGERRLPRTLDADRTQQLLDG 122

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +     E  +I  R+ A+L L Y  GLR+SE + L    +      +R+ GKG+K R +
Sbjct: 123 AV-----EDDFIARRDQAMLELFYSSGLRLSELVGLDLDRLDLAAGLVRVHGKGNKARDL 177

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVFQRYIRQLR-RYL 254
           P+    R+A+  +       L+L  Q       LF G  G+ L P   Q  +RQ   R L
Sbjct: 178 PIGSKAREALRAW-------LSLRAQARPADGALFVGRTGRRLTPRAVQLRVRQAGVREL 230

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G  L    H LRHSFA+HLL +  DLR++Q +LGH  ++TTQIYT+++ ++    +  +Y
Sbjct: 231 GQHLHP--HMLRHSFASHLLESSQDLRAVQELLGHADIATTQIYTHLDFQH----LAAVY 284

Query: 315 DQTHPSITQK 324
           DQ HP   ++
Sbjct: 285 DQAHPRARRR 294


>gi|259909555|ref|YP_002649911.1| Tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
 gi|224965177|emb|CAX56709.1| Tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 309

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 151/303 (49%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L IER L++ T+ SY  D R    +LA      + ++         ++ F+++R
Sbjct: 20  EQFLDALWIERNLAQNTVDSYRLDLRSLGDWLAHQQLSLLNVEVF------NLQEFLAQR 73

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q   L+
Sbjct: 74  LEGGYKATSSARLLSAMRRLFQYLYREKLREDDPSALLSSPKLPQRLPKDLSEAQVERLL 133

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
               L        I+ R+ A+L LLY  GLR++E + LT  +I   Q  +R+ GKG+K R
Sbjct: 134 QAPCLEQP-----IELRDKAMLELLYATGLRVTELVGLTLSDISLRQGVVRVIGKGNKER 188

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+       I +Y +   P+ LN      LF   R K +    F   I+      G+ 
Sbjct: 189 LVPMGEEAVHWIEQYIEYGRPWLLNGQTIDVLFPSNRAKQMTRQTFWHRIKHYATLAGID 248

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q
Sbjct: 249 SDKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQ 304

Query: 317 THP 319
            HP
Sbjct: 305 HHP 307


>gi|23335402|ref|ZP_00120638.1| COG4974: Site-specific recombinase XerD [Bifidobacterium longum
           DJO10A]
 gi|227547607|ref|ZP_03977656.1| integrase/recombinase XerD family protein [Bifidobacterium longum
           subsp. infantis ATCC 55813]
 gi|239621212|ref|ZP_04664243.1| tyrosine recombinase xerD [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|312132535|ref|YP_003999874.1| integrase/recombinase [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482508|ref|ZP_07941524.1| tyrosine recombinase XerD [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689456|ref|YP_004209190.1| recombinase [Bifidobacterium longum subsp. infantis 157F]
 gi|227211862|gb|EEI79758.1| integrase/recombinase XerD family protein [Bifidobacterium longum
           subsp. infantis ATCC 55813]
 gi|239515673|gb|EEQ55540.1| tyrosine recombinase xerD [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|291516706|emb|CBK70322.1| tyrosine recombinase XerD subunit [Bifidobacterium longum subsp.
           longum F8]
 gi|311773469|gb|ADQ02957.1| probable integrase/recomBinase [Bifidobacterium longum subsp.
           longum BBMN68]
 gi|316916060|gb|EFV37466.1| tyrosine recombinase XerD [Bifidobacterium sp. 12_1_47BFAA]
 gi|320460792|dbj|BAJ71412.1| recombinase [Bifidobacterium longum subsp. infantis 157F]
          Length = 311

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 151/307 (49%), Gaps = 17/307 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L ++ +ERGL+  T+ +YE D  +++ +L     E   I     ++  ++  +I+  
Sbjct: 13  EQFLVHIGVERGLATATVTAYESDIAKYIDWL-----ETRGIHEPDAITKQDVEDYIAAL 67

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  RS  R L+ I  F ++   +   T      ++  K +++LP  L   +   L+
Sbjct: 68  DQAGESARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLL 127

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D   +  S  T  +  R+ A+L  +Y  G R+SEA      +I  D+   R+ GKG K R
Sbjct: 128 DAAAVGGS--TDPVVLRDKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQR 185

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNL--NIQLP----LFRGIRGKPLNPGVFQRYIRQLRR 252
           +VPL     +AI  Y +    +L    + ++P    LF   RGK ++       ++    
Sbjct: 186 LVPLGSYACRAITAYLNAGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGE 245

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+      HTLRHSFATHL+  G D+R++Q +LGH  ++TTQIYT+V+ +     ++E
Sbjct: 246 RAGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPET----LIE 301

Query: 313 IYDQTHP 319
            Y  +HP
Sbjct: 302 TYLTSHP 308


>gi|296126655|ref|YP_003633907.1| tyrosine recombinase XerD [Brachyspira murdochii DSM 12563]
 gi|296018471|gb|ADG71708.1| tyrosine recombinase XerD [Brachyspira murdochii DSM 12563]
          Length = 310

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/285 (32%), Positives = 152/285 (53%), Gaps = 14/285 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L    +E+GLS  TL+SY+   R  +I+L F T  K   +TI + +  +I  F+S+R+ 
Sbjct: 15  YLNYEAVEKGLSSNTLESYK---RDIVIYLDFLTRNK---KTILKATRKDIEKFLSERKE 68

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q    R++ R+   I +  K+L      +++   N+  ++    L R L E    T VD+
Sbjct: 69  QGSKSRTVARNKVSIVNLYKFLVMENYISKNPTDNLEVIR----LKRVLPESLTTTEVDD 124

Query: 141 VL-LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           +L +H     K +  R+ AI  L+Y  GLR+SE  SL   +I  +   L+I+GKG+K RI
Sbjct: 125 LLSVHNEKTDKGL--RDKAIFELMYSSGLRVSEICSLRIDDIFFEGKYLKIRGKGNKERI 182

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+       +  Y       +    +   LF   RG  ++     + +++  +   +  
Sbjct: 183 VPINDRALDILQRYIQTSRVIMVKGKKTSELFLNFRGDKISRVGIWKIVKETMKKSNITK 242

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +   HTLRHSFATHL+ +G DLR++Q +LGH  ++TT+IYT+V+S
Sbjct: 243 NVYPHTLRHSFATHLIQHGADLRAVQRMLGHSDITTTEIYTHVDS 287


>gi|88860260|ref|ZP_01134898.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas tunicata
           D2]
 gi|88817458|gb|EAR27275.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas tunicata
           D2]
          Length = 301

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 153/301 (50%), Gaps = 17/301 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ + +E+G+S+ TL +Y  D  +F  F        I  + + ++   +++ +++ R
Sbjct: 16  EQFLEAIWLEQGVSENTLAAYRTDLTKFAEF--------ILPKGLIEVEQQDVQYYLAHR 67

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  RS  R++S +K F +Y  + K  + + + ++   K   SLP+ L+E++   L+
Sbjct: 68  LDNGFKPRSTARTVSALKRFYQYYLREKQLSTNPMTHIGQPKAGQSLPKTLSEEEVGRLL 127

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D   L        I  R+ A+L LLY  GLR+SE + L  + I   Q+ + ++GKG+K R
Sbjct: 128 DAPDLEEP-----IGLRDKAMLELLYATGLRVSELVGLRIEQINLRQAVVFVKGKGNKER 182

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VP+       I  +       L  +    +F   RG  +    F   I+      G+  
Sbjct: 183 LVPMGEEALDCIERFIKEGRPQLIKHATDFVFPSKRGIGMTRQTFWHRIKHYALVAGIES 242

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HTLRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++   H
Sbjct: 243 ELSPHTLRHAFATHLINHGADLRVVQMMLGHSDLSTTQIYTHVAKER----LKSLHQAHH 298

Query: 319 P 319
           P
Sbjct: 299 P 299


>gi|283479632|emb|CAY75548.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 316

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 151/303 (49%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L IER L++ T+ SY  D R    +LA      + ++         ++ F+++R
Sbjct: 27  EQFLDALWIERNLAQNTVDSYRLDLRSLGDWLAHQQLSLLNVEVF------NLQEFLAQR 80

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q   L+
Sbjct: 81  LEGGYKATSSARLLSAMRRLFQYLYREKLREDDPSALLSSPKLPQRLPKDLSEAQVERLL 140

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
               L        I+ R+ A+L LLY  GLR++E + LT  +I   Q  +R+ GKG+K R
Sbjct: 141 QAPCLEQP-----IELRDKAMLELLYATGLRVTELVGLTLSDISLRQGVVRVIGKGNKER 195

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+       I +Y +   P+ LN      LF   R K +    F   I+      G+ 
Sbjct: 196 LVPMGEEAVHWIEQYIEYGRPWLLNGQTIDVLFPSNRAKQMTRQTFWHRIKHYATLAGID 255

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q
Sbjct: 256 SDKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQ 311

Query: 317 THP 319
            HP
Sbjct: 312 HHP 314


>gi|313887306|ref|ZP_07820997.1| phage integrase, N-terminal SAM domain protein [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332299242|ref|YP_004441163.1| Tyrosine recombinase xerC [Porphyromonas asaccharolytica DSM 20707]
 gi|312923225|gb|EFR34043.1| phage integrase, N-terminal SAM domain protein [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332176305|gb|AEE11995.1| Tyrosine recombinase xerC [Porphyromonas asaccharolytica DSM 20707]
          Length = 314

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 91/281 (32%), Positives = 149/281 (53%), Gaps = 16/281 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E+ LS  ++ SY  D  +   ++     E + + ++R++    +  F +      I 
Sbjct: 17  LRLEQHLSDNSIDSYLYDVDKLYTYI-----EDMGL-SLREVELQHLNNFAAHLLDLGIS 70

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
            RSL R LSG+KSF ++L     T E  I  +  ++ ++  + + L E   L  +D+ LL
Sbjct: 71  MRSLARVLSGVKSFFRFL-----TLEEEIERDPTDMLQTPPIHKKLPEVLTLAEIDS-LL 124

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
               E +   +R++AI+ +LY CGLR+SE   LT  ++  D+  L + GKG K R+VP+ 
Sbjct: 125 GAIDEDRIEASRDTAIIEVLYSCGLRVSELCGLTYSDVFLDEGYLHVWGKGRKERLVPMS 184

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           P     +  Y +  P+  N   +    LF   RG+P++       IR L    G+    +
Sbjct: 185 PKAVADVQRYLN-DPYRYNAKPEYDQYLFISRRGQPISRITVFCLIRTLAEQAGIQKEIS 243

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            HTLRHSFATHLL  G DL +IQ ++GH  ++TT++YT+V+
Sbjct: 244 PHTLRHSFATHLLEGGADLHAIQLMMGHESIATTEVYTHVD 284


>gi|253988692|ref|YP_003040048.1| site-specific tyrosine recombinase XerD [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211637984|emb|CAR66612.1| tyrosine recombinase xerd [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780142|emb|CAQ83303.1| tyrosine recombinase xerd [Photorhabdus asymbiotica]
          Length = 303

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 158/306 (51%), Gaps = 23/306 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + +E  L++ TL SY  D +    +L  Y  + +++Q+I      ++++F+++R
Sbjct: 14  EQFLDAIWLEHDLAENTLISYRLDLQALDNWLVNYGHDLLSVQSI------DLQSFLAER 67

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +Y  + K+  +     +   K    LP+ L+EKQ     
Sbjct: 68  VDGGYKASSSARLLSAMRQLFQYFYREKMRADDPTALLSAPKLPKRLPKDLSEKQV---- 123

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL+     + ++ R+ A+L +LY CGLR+SE + LT  ++   Q  +R+ GKG+K R
Sbjct: 124 -EALLNAPCTDQPVELRDKAMLEVLYACGLRVSELVGLTLSDVSLRQGVVRVIGKGNKER 182

Query: 199 IVPLLPSVRKAI--LEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +VPL     +AI  LE Y     D  LN      LF   RG+ +    F   I+      
Sbjct: 183 LVPL---GEEAIYWLENYIEYGRDGLLNGATLDVLFPSNRGRQMTRQTFWYRIKHYALLA 239

Query: 255 GLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  +
Sbjct: 240 GIDTERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRLL 295

Query: 314 YDQTHP 319
           + Q HP
Sbjct: 296 HQQHHP 301


>gi|189439098|ref|YP_001954179.1| Integrase [Bifidobacterium longum DJO10A]
 gi|189427533|gb|ACD97681.1| Integrase [Bifidobacterium longum DJO10A]
          Length = 308

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 151/307 (49%), Gaps = 17/307 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L ++ +ERGL+  T+ +YE D  +++ +L     E   I     ++  ++  +I+  
Sbjct: 10  EQFLVHIGVERGLATATVTAYESDIAKYIDWL-----ETRGIHEPDAITKQDVEDYIAAL 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  RS  R L+ I  F ++   +   T      ++  K +++LP  L   +   L+
Sbjct: 65  DQAGESARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLL 124

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D   +  S  T  +  R+ A+L  +Y  G R+SEA      +I  D+   R+ GKG K R
Sbjct: 125 DAAAVGGS--TDPVVLRDKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQR 182

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNL--NIQLP----LFRGIRGKPLNPGVFQRYIRQLRR 252
           +VPL     +AI  Y +    +L    + ++P    LF   RGK ++       ++    
Sbjct: 183 LVPLGSYACRAITAYLNAGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGE 242

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+      HTLRHSFATHL+  G D+R++Q +LGH  ++TTQIYT+V+ +     ++E
Sbjct: 243 RAGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPET----LIE 298

Query: 313 IYDQTHP 319
            Y  +HP
Sbjct: 299 TYLTSHP 305


>gi|228476153|ref|ZP_04060861.1| tyrosine recombinase XerD [Staphylococcus hominis SK119]
 gi|314936376|ref|ZP_07843723.1| tyrosine recombinase XerD [Staphylococcus hominis subsp. hominis
           C80]
 gi|228269976|gb|EEK11456.1| tyrosine recombinase XerD [Staphylococcus hominis SK119]
 gi|313654995|gb|EFS18740.1| tyrosine recombinase XerD [Staphylococcus hominis subsp. hominis
           C80]
          Length = 295

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 156/305 (51%), Gaps = 21/305 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE---IRAFI 75
           + +L+ ++IE+GLS  T+ +Y  D  ++        EE +    I  + + +   I+  +
Sbjct: 6   EEFLKFIQIEKGLSDNTIGAYRRDLAKY--------EEYMKEHKIAHIDFIDRQVIQECL 57

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                Q    +S+ R +S I++F ++  + K   +   + +   K    LP  L  ++ L
Sbjct: 58  GYLIDQGASAKSMARFISTIRNFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEVEEVL 117

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L     L T    K    R+  IL LLY  G+R+SE + +  ++I      +R+ GKG+
Sbjct: 118 QL-----LETPDLNKKNGYRDRTILELLYATGMRVSELIQINIEDINLIMGFVRVFGKGN 172

Query: 196 KIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K RI+PL  +V + +  Y + + P  L   I   LF  + G+PL      + I+Q     
Sbjct: 173 KERIIPLGDTVIEFLDTYLEKVRPQLLKKTITNVLFLNMHGRPLTRQGIWKMIKQYGLKA 232

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            +  + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y
Sbjct: 233 NINKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRQMY 288

Query: 315 DQTHP 319
           +Q HP
Sbjct: 289 NQFHP 293


>gi|288933626|ref|YP_003437685.1| tyrosine recombinase XerD [Klebsiella variicola At-22]
 gi|288888355|gb|ADC56673.1| tyrosine recombinase XerD [Klebsiella variicola At-22]
          Length = 298

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 159/307 (51%), Gaps = 17/307 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L + + +L  L +ER L++ TL +Y    R   + + +     +++ ++      +++A 
Sbjct: 5   LAQIEQFLDALWLERNLAENTLSAYR---RDLTMLVEWLHHRGLSLASV---GSDDLQAL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R+T      S  R +S ++ F ++L + KI  +     + + K    LP+ L+E Q 
Sbjct: 59  LAERQTGGYKATSTARLISAVRRFFQHLYREKIRPDDPSALLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+   L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  LR+ GKG
Sbjct: 119 ERLLQAPLVEQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVLRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y +   P+ LN      LF   R + +    F   I+     
Sbjct: 174 NKERLVPLGEEAVMWVENYLEYGRPWLLNGVASDVLFPSQRAQQMTRQTFWHRIKHYAVL 233

Query: 254 LGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+  +  + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSAKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHP 319
           ++ Q HP
Sbjct: 290 LHQQHHP 296


>gi|229180107|ref|ZP_04307451.1| Tyrosine recombinase xerC [Bacillus cereus 172560W]
 gi|228603316|gb|EEK60793.1| Tyrosine recombinase xerC [Bacillus cereus 172560W]
          Length = 299

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 161/308 (52%), Gaps = 25/308 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  L+IER  SK T+ SY+ D   F+ F+     ++  I +   ++Y ++R +++  
Sbjct: 8   QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----KREGISSFLDVTYADVRLYLTML 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137
             +K+  +S+ R +S ++S  ++L  R+   + N   + +L KK  S+P+ L  ++    
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               L   S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG K 
Sbjct: 119 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176

Query: 198 RIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           R +P     + +++ Y +      +   D + ++   +F   +G PL     +  + +L 
Sbjct: 177 RYIPFGSYAQDSLITYIENGRKQLVNKTDEDSHM---VFLNAKGTPLTSRGVRYVLNELI 233

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +   L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+     + + 
Sbjct: 234 KKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----ERLR 289

Query: 312 EIYDQTHP 319
            +Y + HP
Sbjct: 290 SVYMKHHP 297


>gi|307718592|ref|YP_003874124.1| tyrosine recombinase XerC [Spirochaeta thermophila DSM 6192]
 gi|306532317|gb|ADN01851.1| tyrosine recombinase XerC [Spirochaeta thermophila DSM 6192]
          Length = 312

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 160/328 (48%), Gaps = 22/328 (6%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           MEG ++  +    L+     +L +L   RGLS+ T++SY  D  +   FL     EK+  
Sbjct: 3   MEGGSVSTLPQETLI---DRFLAHLSHMRGLSEATVRSYRNDLVKVGAFL-----EKLGT 54

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             +   +  +IR  +++    +    S+ R LS ++S+ ++L+K  + ++S +  + ++K
Sbjct: 55  DLV-SATREDIRHCVAEYTLARQAPSSINRMLSSLRSWYRFLRKEGVRSDSPMEGISSVK 113

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LP  L E +   L+D         + +   R+ A+L +LY  G R+ E +SLT   
Sbjct: 114 AGKRLPSFLFEDEVDRLLDI------EGSDFASLRDRALLEVLYSTGCRVQELVSLTTSG 167

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF---DLNLNIQLPLFRGIRGKP 237
           +   +    ++GKG K R++ L    RKA+  Y  L       +    +  LF   +G P
Sbjct: 168 VQVSRGWCVVKGKGGKERLLFLGLGARKALAAYLPLRQALLERMGRREEGALFVNQKGSP 227

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L P      I +  R  GL    + H  RHSFATH+LS G DLR +Q +LGH  LSTTQ+
Sbjct: 228 LTPRGVAYIIERRAREKGLEKRISPHVFRHSFATHVLSRGADLRVVQEMLGHASLSTTQV 287

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           YT+++       +  +Y + HP   + D
Sbjct: 288 YTHLSLPA----LKRMYRKAHPHAERSD 311


>gi|237732945|ref|ZP_04563426.1| site-specific tyrosine recombinase xerD [Mollicutes bacterium D7]
 gi|229384014|gb|EEO34105.1| site-specific tyrosine recombinase xerD [Coprobacillus sp. D7]
          Length = 302

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 160/305 (52%), Gaps = 14/305 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + Q L +E+GLSK T+ SY  D    LI  + +  E+  I  I  ++   I  ++ K  +
Sbjct: 10  YKQYLIVEKGLSKNTIYSYLRD----LIAFSNFIGEEYEINQIENINKEHIHLYL-KELS 64

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     S+ R L  ++    +L K  I  E+ + +    K+   LP  L++++ + ++D 
Sbjct: 65  KTNCTNSISRKLVSLRMLYIFLVKENIVKENLMSSFTLPKRDKKLPIILSQEEMIEILDG 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +++        I +RN  ++ LLY  G+RISE L+LT +++      +++ GKG+K R++
Sbjct: 125 IIV-----CDAISSRNRCMVELLYATGMRISELLNLTLKDLNIKMGFIKVIGKGNKERMI 179

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+   V + + +Y +    + N+     LF    G+ L+   F   ++ +     +    
Sbjct: 180 PIGSYVGEILEQYINDYRAEFNIKNDSLLFFNKHGQRLSREEFYSILQTIVNSTSITKKV 239

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + HT RH+FATHLL NG DLRSIQ +LGH  +STT IYT+++++     +   Y Q HP 
Sbjct: 240 SPHTFRHTFATHLLENGADLRSIQELLGHSDISTTTIYTHISNQK----IRSEYQQFHPR 295

Query: 321 ITQKD 325
           I + +
Sbjct: 296 IKKHN 300


>gi|296133056|ref|YP_003640303.1| tyrosine recombinase XerC [Thermincola sp. JR]
 gi|296031634|gb|ADG82402.1| tyrosine recombinase XerC [Thermincola potens JR]
          Length = 302

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 163/305 (53%), Gaps = 16/305 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR--QLSYTEIRAFISK 77
           +++  L++E+  S+ TLQSY+ D  Q + F++   E  IT + ++  ++ +  IR F+++
Sbjct: 7   DFMVYLQVEKNASEKTLQSYQTDLFQMVDFIS--AEINITPENLQPDRVDHLVIRKFLAE 64

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            + + +   ++ R L+ +++F ++L + ++ T + ++ +   K    LP+ L +     L
Sbjct: 65  LQRRGLSRSTIARKLAAMRTFFRFLCREEVITRNPLIEVATPKVEKRLPQFLYQDDIRNL 124

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++    +T         R+ AIL  LY  G+R+SE ++L   +I  +   +R+ GKG K 
Sbjct: 125 IEAPERNTPR-----GLRDRAILETLYASGIRVSELVNLDMTDIDLNTGYVRVMGKGAKE 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYL 254
           R+VPL      A+  Y       L    + P   +F    G+ ++    +  + +  R +
Sbjct: 180 RVVPLGQFAINALKAYLTHGRTRLACRSKEPSEAVFLNKAGQRISVRSIRDIVNKYVRKI 239

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            +    + H +RHSFATHLL  G DLR++Q +LGH ++STTQIYT+V  ++    + E+Y
Sbjct: 240 SIRQRVSPHIIRHSFATHLLDAGADLRTVQELLGHVKMSTTQIYTHVTREH----LKEVY 295

Query: 315 DQTHP 319
            + HP
Sbjct: 296 KKAHP 300


>gi|118498126|ref|YP_899176.1| site-specific recombinase [Francisella tularensis subsp. novicida
           U112]
 gi|194323353|ref|ZP_03057137.1| tyrosine recombinase XerD [Francisella tularensis subsp. novicida
           FTE]
 gi|254373477|ref|ZP_04988965.1| site specific recombinase XerD [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|118424032|gb|ABK90422.1| site-specific recombinase [Francisella novicida U112]
 gi|151571203|gb|EDN36857.1| site specific recombinase XerD [Francisella novicida GA99-3549]
 gi|194322717|gb|EDX20197.1| tyrosine recombinase XerD [Francisella tularensis subsp. novicida
           FTE]
          Length = 292

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 95/300 (31%), Positives = 147/300 (49%), Gaps = 18/300 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L NL +E GLS+ T+ SY  D    L FL  Y  +   I     L + ++ AFIS R  
Sbjct: 8   FLDNLWLEHGLSQNTISSYRTD----LKFLQNYFAKTDLIS----LDFEQLYAFISYRSK 59

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                RS  R +S ++ F  +L     T  +    +   K +  LP+ + E         
Sbjct: 60  NGYSSRSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDV-----E 114

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL     T+ +  R+ A+L L+Y  GLR+SE + L   +I  +   +++ GKG K RIV
Sbjct: 115 RLLQAPDMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIV 174

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+     + + +Y+      L+ N  +  +F     K +    F   I+      G+   
Sbjct: 175 PIGEYALEYLQKYFAEARTSLSKNFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTD 234

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLRS+Q +LGH  +STT IYT+++       + EIY + HP
Sbjct: 235 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR----LQEIYQKHHP 290


>gi|227833151|ref|YP_002834858.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975]
 gi|262182358|ref|ZP_06041779.1| site-specific tyrosine recombinase XerD [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454167|gb|ACP32920.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975]
          Length = 292

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 150/301 (49%), Gaps = 17/301 (5%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           +L +E+G SK T+ +Y  D  +++ +LA   E  IT   +R+++   +  ++   R + +
Sbjct: 2   HLMVEKGASKNTVSNYRRDINRYVDWLA---ESGIT--DLRRVTRAHVENYLVFLR-ESL 55

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
              S  R+L   +   K+     +  E     +   K++ +LP  L+ +    L++ +  
Sbjct: 56  AQSSASRALIVARGLHKFALAEGMIEEDVAAEVSPPKRAQALPETLSVQDVEALLNAI-- 113

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----QSTLRIQGKGDKIR 198
            T      ID R+ A+L +LYG G RISE +SL+  ++  +     +  L + GKGDK R
Sbjct: 114 PTDESATPIDIRDRALLEMLYGTGARISEVISLSVDDVTGEGPASVRDILVLSGKGDKQR 173

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VPL      A+  Y       L       LF   RGK L+       I+   +   L  
Sbjct: 174 LVPLGSHAVTAVENYLVRARPVLATGASHSLFLNTRGKALSRQSAWAAIKTAAQRAHLST 233

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HTLRHSFATHLL  G D+R++Q +LGH  ++TTQIYT+V +    D + E++   H
Sbjct: 234 KISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTA----DSLREVWRTAH 289

Query: 319 P 319
           P
Sbjct: 290 P 290


>gi|162452703|ref|YP_001615070.1| site-specific recombinase [Sorangium cellulosum 'So ce 56']
 gi|161163285|emb|CAN94590.1| site-specific recombinase [Sorangium cellulosum 'So ce 56']
          Length = 323

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 146/300 (48%), Gaps = 16/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L +ER L+ LTL++Y  D  + +        E   I T+  L  + I  ++     
Sbjct: 37  YLDHLRVERALAPLTLEAYGHDLAKLVAH-----AEASGITTVEGLDQSLIGTYLVALGQ 91

Query: 81  QKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
             I   S  R LS ++ F+++L ++R+I  +   L  R  +    LP+ L+  +   L++
Sbjct: 92  AGISASSAARHLSAVRGFVRFLLRERRIERDPCALVERP-RVGRRLPKVLSFDEIALLIE 150

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                   +  +   R+ A+L+++Y  GLR+SE + L   +I   +  +   GKG K R+
Sbjct: 151 -----APEQGTFKGLRDRAMLHVMYAAGLRVSEVVRLKLADIDRRKGIVMALGKGGKRRL 205

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPL      AI  Y +L            LF   RG PL      + +    R +G+   
Sbjct: 206 VPLGEPALAAIDAYLELRATHPRSAATQVLFLSPRGGPLTRQAVWKLLGGYARAVGIAKP 265

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           ++ H LRHSFATHLL  G DLRS+Q++LGH  + TT+IYT++      D +   Y + HP
Sbjct: 266 SSPHKLRHSFATHLLEGGADLRSVQALLGHANVVTTEIYTHLAD----DHVRAAYRRAHP 321


>gi|301154937|emb|CBW14400.1| site-specific tyrosine recombinase [Haemophilus parainfluenzae
           T3T1]
          Length = 297

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/295 (31%), Positives = 154/295 (52%), Gaps = 17/295 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           IE+GLS+ T+QSY  D      +L    ++ ++++T+  L   +++ F+  R  Q     
Sbjct: 16  IEKGLSENTVQSYRLDLTALCDWL---DKQNLSLETLEPL---DLQQFLGSRLEQGYKAT 69

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R LS ++   +YL + K  T+     + + K  + LP+ L E+Q   L     L+T 
Sbjct: 70  STARMLSAMRKLFQYLYREKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDL-----LNTP 124

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                ++ R+ A+L LLY  GLR++E ++LT +N+   Q  +R+ GKG+K RIVP+    
Sbjct: 125 DVEIPLELRDKAMLELLYATGLRVTELVTLTIENMNLQQGVVRVIGKGNKERIVPMGEEA 184

Query: 207 RKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHT 264
              + ++     P  LN      +F   R + +    F   I+      G+     + H 
Sbjct: 185 AFWVRQFVLYGRPILLNGQSSDVVFPSQRAQQMTRQTFWHRIKHYAILAGIDTDALSPHV 244

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++++ HP
Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER----LKHLHERFHP 295


>gi|297571450|ref|YP_003697224.1| tyrosine recombinase XerD [Arcanobacterium haemolyticum DSM 20595]
 gi|296931797|gb|ADH92605.1| tyrosine recombinase XerD [Arcanobacterium haemolyticum DSM 20595]
          Length = 310

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 154/316 (48%), Gaps = 25/316 (7%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE--EKITIQTIRQLSYTE 70
           E  +  ++++ +L IER LS  TL +Y  D       L  Y E  E  ++ ++  +S  +
Sbjct: 6   EFDRALRDYVAHLGIERSLSDNTLGAYRRD-------LTHYKEHLELRSVASLAAISPED 58

Query: 71  IRAFISKRRTQKIGD----RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
             +F+   R    G      S+ R ++ ++ F ++L    ITT     ++   K    LP
Sbjct: 59  AASFVEYLRDGSAGSVMATSSVARMVTAVRRFHEFLLAEGITTTDASADLHPPKIGMRLP 118

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           +A+   +    ++ +L   +     I  R+ A+L +LYG G RISE + LT  ++  + +
Sbjct: 119 KAITIPE----MEQLLAVVARGDDAISTRDRALLEILYGTGARISEVVGLTVDDMSCENA 174

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVF 243
           T+R+ GKG K RI+PL     +AI  Y +    +L      P    F   RGK L+    
Sbjct: 175 TIRLFGKGRKERILPLGTYAIEAIRAYLNHGRTELVARSAAPTSSFFLNKRGKTLSRQSA 234

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              I+ +    GL    + HT RHSFATHLL  G D+R +Q +LGH  ++TTQIYT V  
Sbjct: 235 WGVIQAVAEEAGLT-DISPHTFRHSFATHLLQGGADVRVVQEMLGHSSVTTTQIYTKVTR 293

Query: 304 KNGGDWMMEIYDQTHP 319
           +     + EIY   HP
Sbjct: 294 ET----LKEIYATAHP 305


>gi|261345596|ref|ZP_05973240.1| tyrosine recombinase XerD [Providencia rustigianii DSM 4541]
 gi|282566076|gb|EFB71611.1| tyrosine recombinase XerD [Providencia rustigianii DSM 4541]
          Length = 300

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 98/305 (32%), Positives = 155/305 (50%), Gaps = 21/305 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + +E+ L++ TL SY  D +    +L         +Q+I      ++++F+++R
Sbjct: 11  EQFLDTIWLEQDLAENTLASYRNDLQSLDRWLDAQQLHLENVQSI------DLQSFLAER 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + KI  +     +   K    LP+ L+EKQ   L+
Sbjct: 65  IDSGYKAASSARLLSAMRRLFQYLYREKIRLDDPSAVIAAPKIPQRLPKDLSEKQVEDLL 124

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +      S     ++ R+ A+L +LY CGLR+SE + LT  +I   Q  +R+ GKGDK R
Sbjct: 125 NAPATEDS-----LELRDKAMLEVLYACGLRVSELIGLTFSDISLRQGVIRVVGKGDKER 179

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQ---RYIRQLRRYL 254
           ++PL       + +Y +   P  LN      LF   RG  +    F    +Y   L    
Sbjct: 180 LIPLGEEAIYWVEKYLEYGRPDLLNGKASDVLFPSKRGTKMTRQTFWHRIKYYAVLANID 239

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G  LS   H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  ++
Sbjct: 240 GESLS--PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRTLH 293

Query: 315 DQTHP 319
           +Q HP
Sbjct: 294 EQHHP 298


>gi|300741394|ref|ZP_07071415.1| putative tyrosine recombinase XerC [Rothia dentocariosa M567]
 gi|300380579|gb|EFJ77141.1| putative tyrosine recombinase XerC [Rothia dentocariosa M567]
          Length = 339

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/299 (30%), Positives = 152/299 (50%), Gaps = 13/299 (4%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  E+  S+ T++SY  D   F  F+      +  I  +  ++   IR ++     ++  
Sbjct: 48  LRYEKYRSEETIRSYISDLYGFFGFIG-----RRGISRVEDINLQLIREWLGSMHLKQNA 102

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             ++ R  S +++F  +  + ++ TE+    M   K+   LP  L+++Q  +++D V L 
Sbjct: 103 KTTVARRGSTLRTFFSWAHEEELITENPTRGMSTPKRDRHLPAVLSQEQMSSVLDTVALR 162

Query: 145 TSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
                + I   R  A+L +LY  G+RISE   L   +I     T+R+ GKG+K R+VPL 
Sbjct: 163 CRENPQDIRMLRLWAVLEVLYSSGMRISELTGLNLSSIDRANKTVRVIGKGNKERVVPLG 222

Query: 204 PSVRKAILEYYDLC-PFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
               K + ++  +  P+ +    +    LF G RGK  NP   +  I ++ R L     +
Sbjct: 223 TPAMKVLSQWVKIGRPYWIAKGSRDVTALFIGPRGKRANPRQIREDISRILRTLEDTEVS 282

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            AH LRHS ATHL+  G D+R++Q +LGH  LSTTQIYT+V+ K     + + Y + HP
Sbjct: 283 GAHVLRHSAATHLVDGGADIRTVQELLGHASLSTTQIYTHVSMKR----LADTYTRAHP 337


>gi|163754938|ref|ZP_02162059.1| site-specific recombinase [Kordia algicida OT-1]
 gi|161325005|gb|EDP96333.1| site-specific recombinase [Kordia algicida OT-1]
          Length = 298

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 102/313 (32%), Positives = 159/313 (50%), Gaps = 31/313 (9%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF----YTEEKITIQTIRQLSYTE 70
           L++ Q++L+   IERGLS+ T+ +Y  D  + + F+      ++   I   T++Q  Y E
Sbjct: 7   LRDFQHFLR---IERGLSENTIVNYSHDIEKLIRFVENNAINHSPLSIDEATVQQFIY-E 62

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           I         + +  RS  R +SG+KSF  YL       ++    +   K    LP  L 
Sbjct: 63  I--------AKVLNARSQTRIISGLKSFFNYLVFEDYRKDNPTELIEAPKIGRKLPDTLA 114

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            K    L+  + L     +K    RN AI+  LYGCGLR+SE ++L   ++  D+  +R+
Sbjct: 115 LKDIEKLIAAIDL-----SKNEGHRNKAIIETLYGCGLRVSELVNLKISDLFFDEGFIRV 169

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            GKGDK R VP+    +K I  Y        P+       + L R  RGK L   +    
Sbjct: 170 TGKGDKQRFVPISSITKKYINLYIQGQRQHVPYIPEFGDTVFLNR--RGKQLTRVMIFTI 227

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +++L    GL  + + HT RHSFATHLL NG DLR+IQ +LGH  ++TT+IY +V+  + 
Sbjct: 228 VKRLTEKSGLKKNISPHTFRHSFATHLLENGADLRAIQLMLGHESITTTEIYMHVDRSH- 286

Query: 307 GDWMMEIYDQTHP 319
              + ++ ++ HP
Sbjct: 287 ---LAKVMEKYHP 296


>gi|256851129|ref|ZP_05556518.1| tyrosine recombinase XerC [Lactobacillus jensenii 27-2-CHN]
 gi|260660553|ref|ZP_05861468.1| tyrosine recombinase XerC [Lactobacillus jensenii 115-3-CHN]
 gi|282932232|ref|ZP_06337676.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1]
 gi|297205994|ref|ZP_06923389.1| tyrosine recombinase XerC [Lactobacillus jensenii JV-V16]
 gi|256616191|gb|EEU21379.1| tyrosine recombinase XerC [Lactobacillus jensenii 27-2-CHN]
 gi|260548275|gb|EEX24250.1| tyrosine recombinase XerC [Lactobacillus jensenii 115-3-CHN]
 gi|281303627|gb|EFA95785.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1]
 gi|297149120|gb|EFH29418.1| tyrosine recombinase XerC [Lactobacillus jensenii JV-V16]
          Length = 302

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 91/279 (32%), Positives = 139/279 (49%), Gaps = 12/279 (4%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  ERG S LTL +Y  D +Q   F     +         Q+S  ++  FI+   +  + 
Sbjct: 14  LAYERGYSNLTLTAYINDLKQAEDFW----KNNGGFNGFEQVSSRDVEIFITSLASAGLS 69

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R LS +KS  K+L +R +        +   +KS  LP    E +   ++D++   
Sbjct: 70  QASQARKLSSLKSLYKFLTRRNLVAVDPTQTVSIHRKSKKLPEFFYEPEIKKVLDSL--- 126

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            S   K+   RN A+  L Y  G+R+SE  +LT Q +  D   + + GKG+K R VP   
Sbjct: 127 -SASDKFT-VRNKAMFELFYATGMRVSEVSNLTLQQVDFDVQMILVHGKGNKDRYVPFGD 184

Query: 205 SVRKAILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
             + ++L Y +     F+ + N    +F   RG  L     +  +R++ +  GL  +   
Sbjct: 185 YAKASLLRYLNEARSLFNPDENNHF-VFLDNRGHQLTSRGIEYIMRKVFQKGGLSANVHP 243

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H LRH+FAT +L+NG DLRS+Q +LGH  LSTTQIYT+V
Sbjct: 244 HELRHTFATQMLNNGADLRSVQELLGHESLSTTQIYTHV 282


>gi|327312733|ref|YP_004328170.1| putative tyrosine recombinase XerD [Prevotella denticola F0289]
 gi|326945335|gb|AEA21220.1| putative tyrosine recombinase XerD [Prevotella denticola F0289]
          Length = 315

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 98/309 (31%), Positives = 154/309 (49%), Gaps = 24/309 (7%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L++E+G S  TL +Y  D  + L +LA   +  +T  T+ QL +     F +      IG
Sbjct: 18  LKLEKGCSPNTLDAYLHDVDKLLRYLAG-EQVSVTDVTLEQLEH-----FAASVSDLGIG 71

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            RSL R LS ++ F ++L             + + K+ + LP  L+  +   L   V L 
Sbjct: 72  ARSLARILSSVRQFYRFLVLDGYMEADPTELLESPKQPDHLPEVLSTAEVDLLEQAVDL- 130

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
               TKW   RN AI+ +L+ CGLR+SE   L   ++  D+  +R+ GKG K R+VP+ P
Sbjct: 131 ----TKWEGHRNRAIIEVLFSCGLRVSELTHLKLSDLYRDEQFVRVMGKGSKERLVPISP 186

Query: 205 SVRKAILEYYDLCPFDLNL-----NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
                 L+  D    D N+       +  +F   RG  L   +    I++     G+  +
Sbjct: 187 RA----LDELDCWFADRNVMKIKSGEEDYVFLNRRGHHLTRTMILIMIKRYAVEAGIRKT 242

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++      ++E     HP
Sbjct: 243 ISPHTLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDTSTLRQEILE----HHP 298

Query: 320 SITQKDKKN 328
              + DK++
Sbjct: 299 RNIRYDKEH 307


>gi|89072532|ref|ZP_01159104.1| tyrosine recombinase [Photobacterium sp. SKA34]
 gi|89051636|gb|EAR57089.1| tyrosine recombinase [Photobacterium sp. SKA34]
          Length = 298

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 152/303 (50%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + +ERGLS+ TL SY  D  + L +L   +   I++      S  +++ +    
Sbjct: 9   ERFLDAMWMERGLSENTLSSYRNDLTKLLRWLKQESRNVISV------SVDDLQRYQQWL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S  R +S I+   +YL + K+  +   + +   K    LP+ L+E Q     
Sbjct: 63  FDKDYKQTSRARMVSAIRRLFQYLHREKMRDDDPSVMLVTPKLPKRLPKDLSEAQV---- 118

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            + LL        I+ R+ A+L LLY  GLR++E ++LT +NI   Q  +RI GKGDK R
Sbjct: 119 -DALLEAPDVNDPIELRDKAMLELLYATGLRVTELVTLTMENISLRQGVVRITGKGDKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+  +    I ++ +   P  L       LF   R + +    F   I+      G+ 
Sbjct: 178 LVPMGENAVDWIEQFIETGRPQLLGEKSSDVLFPSRRARQMTRQTFWHRIKHYAVLAGID 237

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             T + H +RH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +++  
Sbjct: 238 ADTLSPHVMRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQT 293

Query: 317 THP 319
            HP
Sbjct: 294 HHP 296


>gi|90413180|ref|ZP_01221176.1| tyrosine recombinase [Photobacterium profundum 3TCK]
 gi|90325871|gb|EAS42323.1| tyrosine recombinase [Photobacterium profundum 3TCK]
          Length = 298

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 98/305 (32%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + +ERGLS+ TL SY  D    L  L  ++E+K     +  LS  +++ +    
Sbjct: 9   ERFLDAMWMERGLSENTLMSYRND----LTKLRKWSEDKNY--RLVTLSSDDLQRYQQWL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R +S I+   +YL + K+  +     M + +    LP+ L E+Q   L+
Sbjct: 63  FDADFKQTSRARMVSAIRRLFQYLYREKMRDDDPSSMMVSPRLPKRLPKDLTEEQVGALL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D            I+ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKGDK R
Sbjct: 123 D-----APDTNNPIELRDKAMLELLYATGLRVTELVSLTMENVSLRQGVVRVMGKGDKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+  S    I E+ D   P  L       LF   R + +    F   I+      G+ 
Sbjct: 178 LVPMGESAIDWIEEFIDSGRPQLLGEKSSDVLFPSKRARQMTRQTFWHRIKHYAVIAGID 237

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             T + H +RH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +++  
Sbjct: 238 TDTLSPHVMRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHAT 293

Query: 317 THPSI 321
            HP +
Sbjct: 294 HHPRV 298


>gi|292487142|ref|YP_003530012.1| tyrosine recombinase xerD [Erwinia amylovora CFBP1430]
 gi|292900477|ref|YP_003539846.1| integrase/recombinase [Erwinia amylovora ATCC 49946]
 gi|291200325|emb|CBJ47453.1| integrase/recombinase [Erwinia amylovora ATCC 49946]
 gi|291552559|emb|CBA19604.1| Tyrosine recombinase xerD [Erwinia amylovora CFBP1430]
 gi|312171246|emb|CBX79505.1| Tyrosine recombinase xerD [Erwinia amylovora ATCC BAA-2158]
          Length = 297

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 151/303 (49%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L IER L++ T+ SY  D R    +LA      + ++         ++ F+++R
Sbjct: 8   EQFLDALWIERNLAQNTVDSYRLDLRSLGDWLAHQQLSLLNVEV------ANLQEFLAQR 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q   L+
Sbjct: 62  LEGGYKASSSARLLSAMRRLFQYLYREKLRDDDPSALLSSPKLPQRLPKDLSEAQVERLL 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
               L        I+ R+ A+L LLY  GLR++E + LT  +I   Q  +R+ GKG+K R
Sbjct: 122 QAPCLDLP-----IELRDKAMLELLYATGLRVTELVGLTLSDISLRQGVVRVMGKGNKER 176

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+       I ++ +   P+ LN      LF   R K +    F   I+      G+ 
Sbjct: 177 LVPMGEEAVHWIEQFIEYGRPWLLNGQTIDVLFPSNRAKQMTRQTFWHRIKHYATLAGID 236

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q
Sbjct: 237 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQ 292

Query: 317 THP 319
            HP
Sbjct: 293 HHP 295


>gi|332290936|ref|YP_004429545.1| tyrosine recombinase XerD [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169022|gb|AEE18277.1| tyrosine recombinase XerD [Krokinobacter diaphorus 4H-3-7-5]
          Length = 300

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 96/307 (31%), Positives = 155/307 (50%), Gaps = 26/307 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N+   L IERGLS+ T+ +Y  D ++    L  + E+  +      ++  +I+ FI    
Sbjct: 9   NYKSYLRIERGLSENTIDNYARDLKK----LTRHLEQLDSAPDPITITKDDIQDFIYTI- 63

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +++  RS  R +SG+K F  YL       ++ +  + + +    LP  L E++   L+ 
Sbjct: 64  AKEVQARSQARIISGLKGFFNYLIFEDYRKDNPLDLIESPRLGRKLPDTLAEEEIDALIT 123

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            + L           RN A+L  LY CGLR++E +SL   ++  ++  + + GKGDK R 
Sbjct: 124 AIDLSNPQ-----GERNRAMLETLYSCGLRVTELISLKLSDLYFEEGFINVIGKGDKQRF 178

Query: 200 VPLLPSVRKAILEY-------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           VP+    +K I  Y        D+ P  +++     LF   RG+ L   +    I+ L  
Sbjct: 179 VPISEHTQKYINIYRNEIRTHTDVKPEYVDI-----LFLNRRGRQLTRAMIFTIIKDLAV 233

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+  S + HT RHSFATHLL NG DLRSIQ +LGH  ++TT+IY +V+  +    +  
Sbjct: 234 KAGIKKSISPHTFRHSFATHLLQNGADLRSIQQMLGHESITTTEIYMHVDRSD----LAR 289

Query: 313 IYDQTHP 319
           + +Q HP
Sbjct: 290 VMEQYHP 296


>gi|291618684|ref|YP_003521426.1| XerD [Pantoea ananatis LMG 20103]
 gi|291153714|gb|ADD78298.1| XerD [Pantoea ananatis LMG 20103]
          Length = 297

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 103/306 (33%), Positives = 158/306 (51%), Gaps = 23/306 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L IER L++ TL SY  D +    +LA +    +T+ T   LS  +++ F+++R
Sbjct: 8   EQFLDALWIERNLAQNTLSSYRQDLQTLTGWLAHH---GLTLTT---LSAPDLQQFLAER 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K+ T+     +   K    LP+ L+E Q    V
Sbjct: 62  LEGGYKASSSARLLSAMRRLFQYLYREKMRTDDPSAMLAAPKLPQRLPKDLSEAQ----V 117

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D  LL        ++ R+ A+L LLY  GLR+SE + LT  ++   Q  +R+ GKG+K R
Sbjct: 118 DR-LLQAPDVNVPLELRDKAMLELLYATGLRVSELVGLTLNDVSLRQGVVRVIGKGNKER 176

Query: 199 IVPLLPSVRKAI--LEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +VPL     +A+  LEYY     P+ LN       F   R + +    F   I+      
Sbjct: 177 LVPL---GEEAVHWLEYYMEHGRPWLLNGQTLDVFFPSNRAQQMTRQTFWHRIKHYAMLA 233

Query: 255 GLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  +
Sbjct: 234 GIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRLL 289

Query: 314 YDQTHP 319
           + Q HP
Sbjct: 290 HQQHHP 295


>gi|116328373|ref|YP_798093.1| site-specific recombinase XerD [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331099|ref|YP_800817.1| site-specific recombinase XerD [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116121117|gb|ABJ79160.1| Site-specific recombinase XerD [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116124788|gb|ABJ76059.1| Site-specific recombinase XerD [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 298

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 150/302 (49%), Gaps = 16/302 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           QN+ + L +E+GLS  ++ SY  D  +F  FL     EK  I  ++ +   +I  F+++ 
Sbjct: 10  QNFQEYLSVEKGLSDNSIYSYGYDLNKFKNFL-----EKEHIDFLK-VQANDIMRFLNEE 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R +KI  +++ R +  I+ F K+LK  K    +    +   +   ++P  L + +   L 
Sbjct: 64  RDRKISSKTIAREVVAIRQFYKFLKDEKKLDTNPTEKIETPEVMRNIPDYLTQDEIEELF 123

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            ++      E    + R+  I  LLY  GLRISEA +L   ++  +   L ++GKG + R
Sbjct: 124 ASI-----REDNLYELRDKCIFELLYSSGLRISEACNLRLSDMDLEGMILTVEGKGGRQR 178

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP        +  Y     PF L       LF   +G  +N     R +    +   + 
Sbjct: 179 LVPFGEKSLDIMNRYLKQSRPFILKARNCEYLFVSKKGSYINRKSVWRLLNHYIKRTSIS 238

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T HTLRHSFATHLL N  DL+S+Q +LGH  +STTQIYT++ +K     + E++ + 
Sbjct: 239 KKVTPHTLRHSFATHLLENHADLKSVQELLGHIDISTTQIYTHMANKT----LKEVHKKF 294

Query: 318 HP 319
           HP
Sbjct: 295 HP 296


>gi|81428597|ref|YP_395597.1| site-specific DNA-tyrosine recombinase, XerC [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78610239|emb|CAI55288.1| Site-specific DNA-tyrosine recombinase, XerC [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 303

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 88/294 (29%), Positives = 147/294 (50%), Gaps = 16/294 (5%)

Query: 19  QNW----LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           Q+W    LQ L ++R  S  T ++Y+ D + F+ FLA        + + +Q+   E++ +
Sbjct: 5   QDWINLFLQYLIVDRHYSPETQKAYQADIKAFVDFLA----ANGGLTSFKQVGTLEVQTY 60

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++   +K    ++ R +S ++SF +YL + +         ++  K+ + LPR   EK+ 
Sbjct: 61  LNEMDQKKYSGETIARRISSLRSFYRYLIRNEFLQTDPFETVQLKKQRHKLPRFFYEKEM 120

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L   ++       + +  RN AIL LLY  G+R+SE   LT   I      + + GKG
Sbjct: 121 DALFAAIV-----GQEPLTQRNRAILELLYATGMRVSECAQLTIGQIDFGLRVILVHGKG 175

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLR 251
           +K R VP      KA+ +Y +     L    Q     +F    G P+     +  + Q+ 
Sbjct: 176 NKDRYVPFGNHATKALQDYLNDGRVQLMAKRQQEHDVVFVNHLGNPITSRGIEYALDQVD 235

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +   L      H +RH+FATHLL +G DLR++Q +LGH  LSTTQIYT+V + +
Sbjct: 236 KKTCLTSGIHPHMIRHTFATHLLDHGADLRTVQELLGHSSLSTTQIYTHVTTAH 289


>gi|302389650|ref|YP_003825471.1| tyrosine recombinase XerC [Thermosediminibacter oceani DSM 16646]
 gi|302200278|gb|ADL07848.1| tyrosine recombinase XerC [Thermosediminibacter oceani DSM 16646]
          Length = 298

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 156/302 (51%), Gaps = 15/302 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKR 78
           ++L  +   +  S  TL++Y  D  QF+ +L    + KI+  +T+  +++ +IR F++  
Sbjct: 8   SFLTYISAAKNQSPNTLKAYANDLGQFIEYLE---QNKISKTKTLNDITHLDIRGFLAYL 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +      +++ R LS I+SF +YL    + +E     ++ +K    LP  L   +   L+
Sbjct: 65  KESGASKKTIARKLSAIRSFFRYLSTEGLVSEDPTKMVQGMKLPKKLPLFLYPAEIEALL 124

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                 ++     +  R+ AI+ LLY  G+R+SE +SL  +++    + + + GKG K R
Sbjct: 125 ------SAPGQDVLGIRDRAIMELLYATGMRVSELVSLKLKDVNLGANFIIVFGKGSKER 178

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +V       +++ EY       L  N+    LF    G  L     +R I +  + L L 
Sbjct: 179 VVFFGSKAAESLEEYLRKSRPYLVKNLTCDYLFLNKNGTRLTDRSVRRIIDKYVKLLSLN 238

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + HTLRH+FATH+L+NG DL+++Q +LGH  LSTTQIYT+V      + + E+YD+ 
Sbjct: 239 AKISPHTLRHTFATHMLNNGADLKTVQELLGHVSLSTTQIYTHVTK----ERLKEVYDKA 294

Query: 318 HP 319
            P
Sbjct: 295 FP 296


>gi|120600077|ref|YP_964651.1| tyrosine recombinase XerD [Shewanella sp. W3-18-1]
 gi|146291994|ref|YP_001182418.1| tyrosine recombinase XerD [Shewanella putrefaciens CN-32]
 gi|120560170|gb|ABM26097.1| tyrosine recombinase XerD [Shewanella sp. W3-18-1]
 gi|145563684|gb|ABP74619.1| tyrosine recombinase XerD [Shewanella putrefaciens CN-32]
          Length = 300

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 98/300 (32%), Positives = 151/300 (50%), Gaps = 16/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L   +GLS  TL +Y  D R F         ++    T+ + +  ++R++++ R  
Sbjct: 14  FLDDLWSSKGLSDNTLSAYRTDLRHF------DRHQQRHGTTLLEATAADVRSYLALRLE 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     S  R LS ++ F  YL   K      +  + + K +  LP +L+E Q    VD 
Sbjct: 68  QHFARTSSARLLSSLRRFYTYLLLTKQIAVDPMALIESPKLTRHLPHSLSESQ----VDR 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL   +    ++ R+ A+L LLY  GLR+SE + LT + +   Q  +RI GKG K R+V
Sbjct: 124 -LLSEPNVDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLV 182

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           PL       +  Y      +L  + Q  + F   RG+ +    F   I+      G+  +
Sbjct: 183 PLGELAVTEVEAYLKFARQELLGHKQSDVVFPSNRGQMMTRQTFWHRIKLYALRAGIETA 242

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ Q HP
Sbjct: 243 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARAR----LQELHQQHHP 298


>gi|23465930|ref|NP_696533.1| integrase/recombinase [Bifidobacterium longum NCC2705]
 gi|34222807|sp|Q7ZAP1|XERD_BIFLO RecName: Full=Tyrosine recombinase xerD
 gi|23326639|gb|AAN25169.1| probable integrase/recombinase [Bifidobacterium longum NCC2705]
          Length = 308

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 151/307 (49%), Gaps = 17/307 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L ++ +ERGL+  T+ +YE D  +++ +L     E   I     ++  ++  +I+  
Sbjct: 10  EQFLIHIGVERGLATATVTAYESDIAKYIDWL-----ETRGIHEPDAITKQDVEDYIAAL 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  RS  R L+ I  F ++   +   T      ++  K +++LP  L   +   L+
Sbjct: 65  DQAGESARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLL 124

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D   +  S  T  +  R+ A+L  +Y  G R+SEA      +I  D+   R+ GKG K R
Sbjct: 125 DAAAVGGS--TDPVVLRDKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQR 182

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNL--NIQLP----LFRGIRGKPLNPGVFQRYIRQLRR 252
           +VPL     +AI  Y +    +L    + ++P    LF   RGK ++       ++    
Sbjct: 183 LVPLGSYACRAITAYLNAGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGE 242

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+      HTLRHSFATHL+  G D+R++Q +LGH  ++TTQIYT+V+ +     ++E
Sbjct: 243 RAGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPET----LIE 298

Query: 313 IYDQTHP 319
            Y  +HP
Sbjct: 299 TYLTSHP 305


>gi|71734696|ref|YP_277090.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|123761139|sp|Q48C04|XERC_PSE14 RecName: Full=Tyrosine recombinase xerC
 gi|71555249|gb|AAZ34460.1| tyrosine recombinase XerC [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 299

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 150/306 (49%), Gaps = 21/306 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +  +L  ER +S  TL++Y  D  + L +      +K    +   L    +R+F +++  
Sbjct: 8   YCMHLRSERQVSPHTLEAYRRDLSKVLAYC-----QKAQRSSWNDLDIQHLRSFTARQHQ 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q    RSL R LS ++ F KYL +  I        +   K    LP+ L+  +   L+D 
Sbjct: 63  QGQSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDG 122

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +     E  ++  R+ AIL LLY  GLR+SE   L    +      +++ GKG K R++
Sbjct: 123 GV-----EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVL 177

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPL 258
           P+    R+A LE +   P     N Q   +F   +GK L P   Q  ++    R LG  L
Sbjct: 178 PVGSKARQA-LEIW--LPLRALTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNL 234

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +YD  H
Sbjct: 235 HP--HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAH 288

Query: 319 PSITQK 324
           P   +K
Sbjct: 289 PRAKRK 294


>gi|320527482|ref|ZP_08028663.1| putative site-specific tyrosine recombinase XerC [Solobacterium
           moorei F0204]
 gi|320132195|gb|EFW24744.1| putative site-specific tyrosine recombinase XerC [Solobacterium
           moorei F0204]
          Length = 307

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 146/306 (47%), Gaps = 21/306 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ +   R  SK T  +Y  D  +FL +L  +      I +   ++ T++  +I++ R 
Sbjct: 10  FLRQIARVRTGSKDTENAYRRDVERFLEYLREHR-----IDSFEHVTKTDVSDYITQLRD 64

Query: 81  QKIGDRSLK-----RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            +IG + L      R+LS +KSF +YL + +    + +   +       LP  L   Q  
Sbjct: 65  GEIGGKPLSNSSYARNLSSLKSFYRYLNRFEGIKANPVRIFKGGSIRRKLPEFLTFDQME 124

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           T+++   LH       +  RN  I+ ++Y CGLR+SE   L   +I   +  L + GK  
Sbjct: 125 TMLNQFDLHDP-----VQIRNRCIIEVMYACGLRVSECAGLKISSINLVEGFLTVLGKES 179

Query: 196 KIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R+VP  P  ++ I  Y +     F         LF    G+P++    Q    +    
Sbjct: 180 KERMVPFYPRCKQLIQYYMNNARGTFMEKTQEHDILFVNQNGRPISARSIQLICEKAGED 239

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             LP+    H +RHSFATH+L NG DLR +Q +LGH  L TTQIYT+V      D + ++
Sbjct: 240 ANLPIHIHPHMIRHSFATHMLDNGADLRIVQELLGHENLGTTQIYTHVTQ----DRLRKV 295

Query: 314 YDQTHP 319
            D+ HP
Sbjct: 296 VDEAHP 301


>gi|308271353|emb|CBX27961.1| Tyrosine recombinase xerC [uncultured Desulfobacterium sp.]
          Length = 310

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 95/311 (30%), Positives = 153/311 (49%), Gaps = 25/311 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT------EEKITIQTIRQLSYTEIRA 73
           ++++ L  E+G S  T ++Y  D  +F  + A  +      E +I+   +   +Y  IRA
Sbjct: 12  SFIETLASEKGYSVNTCRAYANDLYEFSSYAAEKSGQDSDEESEISTFMVEDANYLLIRA 71

Query: 74  ---FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
              F+ K+  +K    S+ R LS ++SF K+L +R I +++ +  +   K+  ++P  L 
Sbjct: 72  YLGFLHKKNKKK----SIIRKLSALRSFFKHLVRRNIISDNPLELISTPKQDKNIPAYLT 127

Query: 131 EKQALTLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
             +   L+D++      +T  +   RN AI   +Y  G+R+SE   L   ++      ++
Sbjct: 128 VDEMFRLLDSI------KTDTVSGLRNRAIFETMYSSGIRVSELAGLNVSSVDFGAGLIK 181

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIR 248
           + GKG K RIVP+       I  Y      D  L+ +  PLF       L      R + 
Sbjct: 182 VFGKGGKERIVPIGSKAMDTIKSYRQKIQGDNILSDKNSPLFLNKNKGRLTTRSIARVLE 241

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +      + +  + H LRHSFATH+L  G DLR +Q +LGH  LSTTQ YT+V    G D
Sbjct: 242 KFVSEFCISVPVSPHALRHSFATHMLDAGADLRVVQELLGHKSLSTTQRYTHV----GID 297

Query: 309 WMMEIYDQTHP 319
            +ME YD+ HP
Sbjct: 298 RLMETYDKAHP 308


>gi|226525271|gb|ACO70871.1| integrase family protein [uncultured Verrucomicrobia bacterium]
          Length = 294

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 154/308 (50%), Gaps = 29/308 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L +LE ER +S  TL +Y+    +F   +     + +T    R+  +   +  +SK 
Sbjct: 7   EGFLHHLENERNVSPRTLTNYQHALSEFRKAMPDANWKTLTADHFRRYLFAMAKREMSKP 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK-SNSLPRALNEKQALTL 137
            TQ++         + +++F KYL +R    E+N L    L K    LP  L  KQ + L
Sbjct: 67  -TQRL-------HFAALRTFYKYLVERH-GLETNPLKQVQLPKLDRKLPVVLTAKQVVEL 117

Query: 138 VDNVLLHTSHETK--WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           ++  L     +    W+  R++AI+ L Y  GLR++E + L   ++     ++R+ GKG 
Sbjct: 118 LEAPLKVDKQKQAPVWMPFRDAAIMELFYSSGLRLAELVGLNVADLDVYTESVRVIGKGR 177

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQRYIRQLR 251
           K R+VP+      A+ +Y       +      PLF       L P     V QRY+    
Sbjct: 178 KERVVPVGQPALLAVQKYRQEAKVHVG-----PLFISKLRTRLTPMRVWLVIQRYLP--- 229

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            +  +P++ T H LRHSFATHLL +G DLR++QS+LGH  LSTTQIYT+V ++     + 
Sbjct: 230 -HTSIPVNVTPHKLRHSFATHLLDHGADLRAVQSLLGHASLSTTQIYTHVTTER----LK 284

Query: 312 EIYDQTHP 319
             YD  HP
Sbjct: 285 RAYDDAHP 292


>gi|302189430|ref|ZP_07266103.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           syringae 642]
          Length = 299

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 148/313 (47%), Gaps = 41/313 (13%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           +L  ER +S  TL++Y  D  + L +      +K  + +   L    +R+F +++  Q  
Sbjct: 11  HLRSERQVSPHTLEAYRRDLGKVLAYC-----QKAQLSSWSDLDIQHLRSFTARQHQQGQ 65

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
             RSL R LS ++ F KYL +  I        +   K    LP+ L+  +   L+D  + 
Sbjct: 66  SSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGV- 124

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
               E  ++  R+ AIL LLY  GLR+SE   L    +      +++ GKG K R++P+ 
Sbjct: 125 ----EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVG 180

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPL-----------FRGIRGKPLNPGVFQRYIRQL-R 251
              R+A             L + LPL           F   +GK L P   Q  ++    
Sbjct: 181 SKARQA-------------LEVWLPLRALTNPRDDAVFVSQQGKRLGPRAIQVRLKAAGE 227

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R LG  L    H LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    + 
Sbjct: 228 RELGQNLHP--HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LA 281

Query: 312 EIYDQTHPSITQK 324
            +YD  HP   +K
Sbjct: 282 TVYDSAHPRAKRK 294


>gi|242240703|ref|YP_002988884.1| tyrosine recombinase XerD [Dickeya dadantii Ech703]
 gi|242132760|gb|ACS87062.1| tyrosine recombinase XerD [Dickeya dadantii Ech703]
          Length = 299

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 154/303 (50%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + +ER L++ TLQSY  D R    +LA +        ++      ++++F+++R
Sbjct: 10  EQFLDAVWLERNLAENTLQSYRRDLRTLAAWLAHHHA------SLSDARPDDLQSFLAER 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K+  +     + + K    LP+ L E Q     
Sbjct: 64  VDGGYKATSSARLLSAMRRLFQYLYREKVRPDDPSAVLSSPKLPQRLPKDLTEAQV---- 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL      + ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K R
Sbjct: 120 -ESLLAAPATDQPLELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKER 178

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       + +Y +   P+ L+      +F   RG+ +    F   I+       + 
Sbjct: 179 LVPLGEEAVYWVEQYLEYGRPWLLDGQTLDVMFPSTRGRQMTRQTFWHRIKHYAVLASID 238

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            +  + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q
Sbjct: 239 SARLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQQ 294

Query: 317 THP 319
            HP
Sbjct: 295 HHP 297


>gi|213691797|ref|YP_002322383.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|213523258|gb|ACJ52005.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320457891|dbj|BAJ68512.1| recombinase [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 308

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 150/307 (48%), Gaps = 17/307 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L ++ +ERGL+  T+ +YE D  +++ +L     E   I     ++  ++  +I+  
Sbjct: 10  EQFLVHIGVERGLATATVTAYESDIAKYIDWL-----ETRGIHEPDAITKQDVEDYIAAL 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  RS  R L+ I  F ++   +   T      ++  K +++LP  L   +   L+
Sbjct: 65  DQAGESARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLL 124

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D   +  S  T  +  R+ A+L  +Y  G R+SEA      +I  D+   R+ GKG K R
Sbjct: 125 DTAAVGGS--TDPVVLRDKALLEFMYATGCRVSEATGTNLDDIDLDEHIARLMGKGSKQR 182

Query: 199 IVPLLPSVRKAILEYYDLCPFDLN--LNIQLP----LFRGIRGKPLNPGVFQRYIRQLRR 252
           +VPL     +AI  Y +    +L    + ++P    LF   RGK ++       ++    
Sbjct: 183 LVPLGSYACRAITAYLNAGRGELERRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGE 242

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+      HTLRHSFATHL+  G D+R++Q +LGH  ++TTQIYT+V+ +     ++E
Sbjct: 243 RAGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPEA----LIE 298

Query: 313 IYDQTHP 319
            Y   HP
Sbjct: 299 TYLTAHP 305


>gi|296454370|ref|YP_003661513.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183801|gb|ADH00683.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 308

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 150/307 (48%), Gaps = 17/307 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L ++ +ERGL+  T+ +YE D  +++ +L     E   I     ++  ++  +I+  
Sbjct: 10  EQFLIHIGVERGLATATVTAYESDIAKYIDWL-----ETRGIHEPDAITKQDVEDYIAAL 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  RS  R L+ I  F ++   +   T      ++  K +++LP  L   +   L+
Sbjct: 65  DQAGESARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLL 124

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D   +  S  T  +  R+ A+L  +Y  G R+SEA      +I  D+   R+ GKG K R
Sbjct: 125 DTAAVGGS--TDPVVLRDKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQR 182

Query: 199 IVPLLPSVRKAILEYYDLCPFDLN--LNIQLP----LFRGIRGKPLNPGVFQRYIRQLRR 252
           +VPL     +AI  Y +    +L    + ++P    LF   RGK ++       ++    
Sbjct: 183 LVPLGSYACRAITAYLNAGRGELERRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGE 242

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+      HTLRHSFATHL+  G D+R++Q +LGH  ++TTQIYT+V+ +     ++E
Sbjct: 243 RAGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPET----LIE 298

Query: 313 IYDQTHP 319
            Y   HP
Sbjct: 299 TYLTAHP 305


>gi|149910171|ref|ZP_01898817.1| tyrosine recombinase [Moritella sp. PE36]
 gi|149806757|gb|EDM66721.1| tyrosine recombinase [Moritella sp. PE36]
          Length = 296

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 92/296 (31%), Positives = 147/296 (49%), Gaps = 22/296 (7%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           ERGLS  TL SY  D  Q+  +L  + ++ +T+  +      EI+AF++ R        S
Sbjct: 17  ERGLSDNTLSSYRNDLNQYHHWLVQHKQQLLTVDRL------EIQAFMASRFDLGYKASS 70

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             R LS I+ F +YL + ++  +     + + K    LP  L+E +      N LL    
Sbjct: 71  TARQLSAIRRFYQYLYREQMRDDDPTALLISPKLPQRLPDDLSEAEV-----NALLAAPE 125

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV- 206
               I  R+ A++ +LY  GLR+SE + L+ +++   Q  +R+ GKG K R+VP+     
Sbjct: 126 LDDPIQLRDKAMMEVLYATGLRVSELVGLSMESVSLRQGLVRVTGKGGKERLVPMGEEAV 185

Query: 207 ---RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
               + I E        L  ++  P     RG  +    F   ++   +  G+    + H
Sbjct: 186 YWTERFIAEGRATLLKGLTSDVVFP---SRRGNFMTRQTFWHRLKHYSQVAGITTHLSPH 242

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           TLRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V +      + +++ + HP
Sbjct: 243 TLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATAR----LEQLHSEHHP 294


>gi|332799166|ref|YP_004460665.1| Tyrosine recombinase xerC [Tepidanaerobacter sp. Re1]
 gi|332696901|gb|AEE91358.1| Tyrosine recombinase xerC [Tepidanaerobacter sp. Re1]
          Length = 300

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 157/304 (51%), Gaps = 20/304 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +++  L   +  S+ T+++Y  D  QFL +L    ++K++   +   ++  IR F++  +
Sbjct: 8   SFIDYLRATKTASQNTIKAYSEDLSQFLEYLK---QKKLSEPILVNATHLHIRGFLAYLQ 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +KI  R+  R LS ++SF KYL       E+   ++   K S  LP  L   +   L+ 
Sbjct: 65  EKKISKRTAARKLSALRSFYKYLVVEGFVQENIAKSISTPKTSKKLPLFLYPGEIEVLL- 123

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                ++ +   +  R+ AI+ LLY  G+R+ E + L   +I    + + + GKG K R+
Sbjct: 124 -----SAPKNDVLGIRDKAIMELLYATGMRVGELVLLKTSDINFGSNYIIVFGKGSKERV 178

Query: 200 VPLLPSVRKAILEYYDLC-PF---DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           V       +++ +Y     PF   D+N +    LF    G  ++    +R I +  +   
Sbjct: 179 VFFGQKAEESLEKYLKESRPFLTKDINCD---SLFLNKNGTAISARSIRRIIDKYVKIAT 235

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L    + HTLRH+FATH+L+NG DL+++Q +LGH  LSTTQIYT+V      + + E+YD
Sbjct: 236 LNSEVSPHTLRHTFATHMLNNGADLKTVQELLGHSSLSTTQIYTHVTK----ERLKEVYD 291

Query: 316 QTHP 319
           +T P
Sbjct: 292 KTFP 295


>gi|323701841|ref|ZP_08113511.1| tyrosine recombinase XerC [Desulfotomaculum nigrificans DSM 574]
 gi|323533145|gb|EGB23014.1| tyrosine recombinase XerC [Desulfotomaculum nigrificans DSM 574]
          Length = 300

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 158/302 (52%), Gaps = 14/302 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR--QLSYTEIRAFISK 77
           +++  L++++  S  T+++Y+ D  + + F  F T   +  + +   Q+     R F+S 
Sbjct: 7   HFINFLKVQKNFSDHTIEAYQKDLFEGIDF--FSTVLNVCDEKLHPSQIDSRLFRNFLSH 64

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            + + +   ++ R L+  ++F ++L +  +   + +L M N K+   LP+ L + +A  L
Sbjct: 65  MQERNLQRSTIARRLAAWRTFFRFLYREGLVQTNPLLRMANPKQEKRLPKFLYQDEAKEL 124

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           V+      S     +  R+ ++L LLY  G+R+SE ++L   ++   +  LR+ GKG K 
Sbjct: 125 VE------SPGNTPLGVRDRSLLELLYATGIRVSELVALDLYHLDLSRGYLRVWGKGSKE 178

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VP+      A+  Y       L       +F   +G  L+    ++ I +  + +GL 
Sbjct: 179 RLVPIHDRAVAALKRYLTEARPKLAQPDCPAVFVNYKGSRLSDRGVRKLIDKYCQQVGLT 238

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + + H +RHSFATHLL NG DLRS+Q +LGH  LSTTQIYT+V  +     + +IY  +
Sbjct: 239 KNISPHVIRHSFATHLLDNGADLRSVQELLGHVSLSTTQIYTHVTKQK----LKKIYHLS 294

Query: 318 HP 319
           HP
Sbjct: 295 HP 296


>gi|218258194|ref|ZP_03474596.1| hypothetical protein PRABACTJOHN_00250 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225689|gb|EEC98339.1| hypothetical protein PRABACTJOHN_00250 [Parabacteroides johnsonii
           DSM 18315]
          Length = 301

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 93/297 (31%), Positives = 158/297 (53%), Gaps = 14/297 (4%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E+ LS  ++ +Y  D  +   F+   +E K        ++Y +++ F+++     I 
Sbjct: 15  LRLEKALSANSIDAYLTDLDKLTNFVE--SEGK----KYADVTYDDLQQFVARLHDIGIH 68

Query: 85  DRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
            RS  R +SGIKSF ++L     ITT+   L + + K    LP  L   +  +++D + L
Sbjct: 69  PRSQARIISGIKSFYRFLFLDNYITTDPTEL-LESPKIGLKLPEVLTVNEINSILDTIDL 127

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
                T     RN A+L +LY CGLR+SE +SL   ++  D+  ++++GKG K R+VP+ 
Sbjct: 128 -----TLPEGQRNRAMLEVLYSCGLRVSELVSLRFTDVYFDEGFIKVEGKGSKQRLVPIS 182

Query: 204 PSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            +  K I  Y YD     +    +  LF   RG  L+  +    I+Q     G+  + + 
Sbjct: 183 ETAIKEIKNYLYDRNHVPVKKGFEDILFLSRRGTALSRIMVFHIIKQQTEMAGIKKNVSP 242

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HT RHSFATHLL  G +L +IQ +LGH +++TT+IYT+++ +     ++E + ++ P
Sbjct: 243 HTFRHSFATHLLEGGANLLAIQEMLGHEKITTTEIYTHIDRQFLRKEILEHHPRSKP 299


>gi|172040772|ref|YP_001800486.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109]
 gi|171852076|emb|CAQ05052.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109]
          Length = 303

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 152/306 (49%), Gaps = 16/306 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+ R+ WL++L +ER LS+ TL SY  DT ++L +L          +++ +L+  +I +F
Sbjct: 10  LQHRERWLRHLRLERNLSRNTLDSYRRDTDRYLAWLG--------ARSVTELNTGDIESF 61

Query: 75  ISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++   + + +   +  R L+ +++F ++L    +T      ++    ++ S+P+AL+  +
Sbjct: 62  MASLAKGEGLAASTRARILAAVRNFHRFLTGEGVTEGDVADDVARPGQAASIPKALSIAE 121

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++++           I  R+ A+L +LY  G R+SE L L   ++   +  + ++GK
Sbjct: 122 VTAILESC--PNDDAASLIQIRDRALLEMLYSTGARVSELLGLDVDDVDPTEKLIIVRGK 179

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R+VP+      A+  Y        N      LF    G  +        +  +   
Sbjct: 180 GSKERVVPVGDPALDALQHYLVRVRPAFNKKGSAALFLNRNGGRMGRQSAFNMVSSVSEK 239

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    + H+ RHSFATHLL  G D+R +Q +LGH  + TTQIYT V+     D + E 
Sbjct: 240 AGVA-GVSPHSFRHSFATHLLEGGADIRVVQELLGHSNVVTTQIYTKVSP----DHLREA 294

Query: 314 YDQTHP 319
           + ++HP
Sbjct: 295 WSESHP 300


>gi|50954349|ref|YP_061637.1| site-specific tyrosine recombinase XerD [Leifsonia xyli subsp. xyli
           str. CTCB07]
 gi|50950831|gb|AAT88532.1| integrase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 301

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 153/304 (50%), Gaps = 20/304 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI---SK 77
           +L+++ IERGLS  T+ +Y    R   ++  +   E++T QT   ++   + A++   + 
Sbjct: 10  YLRHVAIERGLSANTVAAYR---RDLAVYAGWLAVEQVT-QTA-AVTPATVSAYLQHLAT 64

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R    +   SL R LS ++SF ++L +    T     ++R  K  + LP+A+   Q    
Sbjct: 65  RGESPLTASSLARMLSTVRSFHRFLLEEGRVTVDAAHDIRPPKLPSRLPKAIGVDQV--- 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               LL  +      D R+ A+L L+Y  G R+SEA+ L   + + D   +R+ GKG K 
Sbjct: 122 --AALLAATDGDDLADLRDKALLELMYATGARVSEAVGLN-VDDVIDTDVVRLTGKGAKQ 178

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           RIVPL    R A+  Y       L+   +    LF G+RG  L+       IR       
Sbjct: 179 RIVPLGSYARAAVSAYLVRARPTLSTRGRATPALFLGMRGARLSRQNVWLIIRAAADRAD 238

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L +  + H LRHSFATHLL+ G D+R +Q +LGH  ++TTQ+YT V +    D + ++Y 
Sbjct: 239 LTVEVSPHILRHSFATHLLAGGADVRVVQELLGHSSVATTQLYTLVTA----DTLRDVYV 294

Query: 316 QTHP 319
             HP
Sbjct: 295 SAHP 298


>gi|319892267|ref|YP_004149142.1| Site-specific tyrosine recombinase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161963|gb|ADV05506.1| Site-specific tyrosine recombinase [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 303

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 98/312 (31%), Positives = 164/312 (52%), Gaps = 24/312 (7%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           FEL + ++ +L  L+ ER  S  TL++Y  D  QF  FLA   +E++++   +   Y + 
Sbjct: 6   FELKQIQEQFLDMLKRERFFSDHTLKAYHDDLVQFNRFLA---QEQLSLTAFK---YIDA 59

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           R ++       +   ++ R +S ++SF  +   +     +  + + + KK   LP     
Sbjct: 60  RNYLQTLYDLGLQRTTVSRKISTLRSFYAFWMTQDHEIVNPFVQLVHPKKERYLPTFFYT 119

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           ++   L   V+   +H+      R+  IL L Y  G+R+SE +SL  +++  +   +++ 
Sbjct: 120 EEMEALFQTVM-QDAHK----GLRDRVILELFYATGIRVSELVSLKTEDVDLEMCWIKVL 174

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNP-GVFQRYIRQ 249
           GKG K RIVP     R++I +Y  L  F    N+Q P L   ++G+P+   GV  RY+  
Sbjct: 175 GKGGKERIVPFGEFCRQSIEQY--LAEFAPIQNVQHPYLITNLKGQPITERGV--RYVLN 230

Query: 250 --LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
             ++R  G+  S   H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V ++   
Sbjct: 231 DIVKRTAGVT-SIHPHKLRHTFATHLLNEGADLRTVQSLLGHVNLSTTGRYTHVTNQQ-- 287

Query: 308 DWMMEIYDQTHP 319
             +  +Y Q HP
Sbjct: 288 --LRNVYLQAHP 297


>gi|322419214|ref|YP_004198437.1| tyrosine recombinase XerD [Geobacter sp. M18]
 gi|320125601|gb|ADW13161.1| tyrosine recombinase XerD [Geobacter sp. M18]
          Length = 292

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 150/300 (50%), Gaps = 18/300 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +ERG +  T+ +Y  D  ++L +L     +        Q+  +++  ++ K + 
Sbjct: 8   FLNYLLVERGAAANTVAAYSRDLTRYLAYLGEREPD--------QIRPSDVTGYLGKLKG 59

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + I  RS  R+LS ++   ++L +      +    +   K    LP  L+ ++       
Sbjct: 60  EGIAPRSRARALSALRMLHRFLVREGHCEVNPTAIVEAPKGLLKLPTVLSSREV-----E 114

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL +  +T  I+ R+ A+L LLY  GLR+SE + L   ++      L   GKGDK R++
Sbjct: 115 ALLASPLDTGAIELRDKAMLELLYATGLRVSELVGLKTGDVNIAAGYLMTIGKGDKERLI 174

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+  S  +A+ EY +    +L      PL F    G+ +    F   I++     G+   
Sbjct: 175 PMGESACRAVGEYLEKARQELLKQKSSPLLFISRLGEGMTRQAFWNIIKKRALQAGVRSG 234

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRHSFATHLL NG DLRS+Q +LGH  LSTTQIYT+V  +     +  ++ + HP
Sbjct: 235 ISPHTLRHSFATHLLENGADLRSVQIMLGHADLSTTQIYTHVTRER----LKRLHAEFHP 290


>gi|159901208|ref|YP_001547455.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
 gi|254799344|sp|A9B1E0|XERC_HERA2 RecName: Full=Tyrosine recombinase xerC
 gi|159894247|gb|ABX07327.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 306

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 95/286 (33%), Positives = 154/286 (53%), Gaps = 11/286 (3%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ERGL+  T+ +Y  D  QF+ F+     E+ T  +   +S  ++ AF+   
Sbjct: 6   EQFLAYLTVERGLTGNTIAAYRTDLDQFVNFIV----ERNT-GSWSNVSRDDLLAFLLFL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + ++    ++ R  + IKSF +YL+ +   T +   N+ + K    LP+A+   Q   L+
Sbjct: 61  KEKRYATSTIARRTAAIKSFFEYLQGQHSITTNPTENLDSPKVDRFLPKAITVAQVDELL 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +  L  +  E      R+ A+L +LY  G+R+SE ++L   ++      +R  GK +K R
Sbjct: 121 ELPLTTSGPE----GLRDKAMLEVLYATGMRVSELVALDVGDVDLAIHQIRCLGKANKER 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
            +P++ S   A+ EY D+    ++ N   P LF   RGK L    F   ++     LGL 
Sbjct: 177 NLPIVGSASTALEEYLDIARGQISRNGGDPALFLNHRGKRLTRQGFWLILKGYAERLGLS 236

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              T HTLRHSFATH+L+ G DLR +Q +LGH  +STTQIYT+V++
Sbjct: 237 -DLTPHTLRHSFATHMLNRGKDLREVQELLGHASISTTQIYTHVSN 281


>gi|295396859|ref|ZP_06806987.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563]
 gi|294974885|gb|EFG50584.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563]
          Length = 311

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 148/303 (48%), Gaps = 20/303 (6%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           E+  S  T+++Y  D   F  F+     +   I  + Q++Y +IR ++   +   +  +S
Sbjct: 17  EKQYSPETIKAYMADLDNFQAFM-----KDAGIAQLDQVAYRDIRIYLGNLQRGGLSRKS 71

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           + R LS ++S    L  R++ +E+    ++  K    LP    E +  +L D+V      
Sbjct: 72  ISRHLSSLRSAYNLLLDRELVSENPFNYVKTAKTGLKLPDFFYESEIQSLFDSV-----Q 126

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
            +  I  RN A+L  LYG G R+SE   L    +      + ++GKG+K R VP+     
Sbjct: 127 GSDPIALRNRALLEFLYGTGARVSEVRDLAINQVDLTADMVLLRGKGNKDRYVPIGSFCH 186

Query: 208 KAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            A+++Y +      +       N  + LF   +G+ L        + Q+ +     LS  
Sbjct: 187 DALVDYLENGRSQLMAKGHYEDNEHVFLFVNYKGEQLTSQGIAYILDQIVKNSATTLSIH 246

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            H LRHSFATHLL+NG D+R++Q +LGH  LSTTQIYT+++ +     + + Y Q HP  
Sbjct: 247 PHKLRHSFATHLLNNGADIRTVQELLGHASLSTTQIYTHLSKEK----LRDNYLQFHPHA 302

Query: 322 TQK 324
            QK
Sbjct: 303 KQK 305


>gi|238855698|ref|ZP_04645995.1| tyrosine recombinase XerC [Lactobacillus jensenii 269-3]
 gi|260664453|ref|ZP_05865305.1| tyrosine recombinase XerC [Lactobacillus jensenii SJ-7A-US]
 gi|282932212|ref|ZP_06337659.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1]
 gi|313472147|ref|ZP_07812639.1| tyrosine recombinase XerC [Lactobacillus jensenii 1153]
 gi|238831683|gb|EEQ24023.1| tyrosine recombinase XerC [Lactobacillus jensenii 269-3]
 gi|239529518|gb|EEQ68519.1| tyrosine recombinase XerC [Lactobacillus jensenii 1153]
 gi|260561518|gb|EEX27490.1| tyrosine recombinase XerC [Lactobacillus jensenii SJ-7A-US]
 gi|281303662|gb|EFA95817.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1]
          Length = 302

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 90/282 (31%), Positives = 138/282 (48%), Gaps = 18/282 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  ERG S LTL +Y  D +Q   F     +        +Q++  +I  +I+   +  + 
Sbjct: 14  LAYERGYSNLTLTAYLNDLKQAEDFW----KNNGGFNGFKQVTSRDIEIYIASLASTGLS 69

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R LS +KSF K+L +R +        +   +KS  LP    E +   ++D++   
Sbjct: 70  QASQARKLSSLKSFYKFLTRRNLVEVDPTQTVSIHRKSKKLPEFFYEPEIKKVLDSL--- 126

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
               +  +  RN A+  L Y  G+R+SE  +LT + I  D   + + GKG+K R VP   
Sbjct: 127 --SASDKLTVRNKAMFELFYATGMRVSEVSNLTLEQIDFDVQMILVHGKGNKDRYVPFGD 184

Query: 205 SVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
             +  +L Y +       P D N  +    F   RG  L     +  +R++ +  GL  +
Sbjct: 185 YAKACLLRYLNEARRLFNPDDDNHYV----FLDNRGHQLTSRGIEYIMRKVFQKGGLSAN 240

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              H LRH+FAT +L+NG DLRS+Q +LGH  LSTTQIYT+V
Sbjct: 241 VHPHELRHTFATQMLNNGADLRSVQELLGHESLSTTQIYTHV 282


>gi|320540116|ref|ZP_08039771.1| site-specific tyrosine recombinase [Serratia symbiotica str.
           Tucson]
 gi|320029782|gb|EFW11806.1| site-specific tyrosine recombinase [Serratia symbiotica str.
           Tucson]
          Length = 299

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 156/303 (51%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER L++ TL SY  D +     +A+   + IT+   + L   +++AF+++R
Sbjct: 10  EQFLDALWLERNLAENTLVSYRLDLQ---ALVAWLNHQNITLLQAQAL---DLQAFLAER 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q     
Sbjct: 64  VDGGYKATSSARLLSAMRRLFQYLYREKLRADDPTTRLASPKLPQRLPKDLSEAQI---- 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            + LL      + I+ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K R
Sbjct: 120 -DALLKAPCVDQPIELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKER 178

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       I  Y +   P+ +N      LF   R + +    F   I+      G+ 
Sbjct: 179 LVPLGEEAVYWIENYLEHGRPWLVNSQALDVLFPSQRCQQMTRQTFWHRIKHYAILAGID 238

Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q
Sbjct: 239 SERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQQ 294

Query: 317 THP 319
            HP
Sbjct: 295 HHP 297


>gi|325922226|ref|ZP_08184012.1| tyrosine recombinase XerC subunit [Xanthomonas gardneri ATCC 19865]
 gi|325547296|gb|EGD18364.1| tyrosine recombinase XerC subunit [Xanthomonas gardneri ATCC 19865]
          Length = 305

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 158/314 (50%), Gaps = 25/314 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK--------ITIQTIRQLSYTE 70
           +++L  L++ER +S  TL +Y    R     +++  E+K          +    QL+  +
Sbjct: 5   EDFLAYLQVERQVSAHTLDAYR---RDLAALVSWAAEQKGEDGAPLDAALLDSAQLTSAQ 61

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +R F++    + +  +SL+R LS  +S+  +L K      S    MR  K    LP+ L+
Sbjct: 62  LRQFVAAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIAASPAAAMRAPKAPRKLPQVLD 121

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             +A+ LV+            +  R+ A+L L Y  GLR+SE  +L  +++  +   + +
Sbjct: 122 ADEAVRLVEVP------TDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLESGLVMV 175

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG+K R+VP+ P    A+ E+      D     +  +F G  G  ++    Q  I+QL
Sbjct: 176 LGKGEKQRLVPVGPHAITALREWLR----DSGGRAETHVFPGRAGGAISQRAVQIRIKQL 231

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+      H LRHSFA+H+L + GDLR +Q +LGH  ++TTQIYT+++ ++    +
Sbjct: 232 AVRQGMFKDVHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQH----L 287

Query: 311 MEIYDQTHPSITQK 324
            ++YD  HP   +K
Sbjct: 288 AKVYDAAHPRAKRK 301


>gi|212710035|ref|ZP_03318163.1| hypothetical protein PROVALCAL_01088 [Providencia alcalifaciens DSM
           30120]
 gi|212687242|gb|EEB46770.1| hypothetical protein PROVALCAL_01088 [Providencia alcalifaciens DSM
           30120]
          Length = 300

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 163/308 (52%), Gaps = 27/308 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + +E+ L++ TL SY  D +    +L    ++++ ++T++ +   ++++F+++R
Sbjct: 11  EQFLDTIWLEQDLAENTLASYRNDLQSLDRWL---DKQQLHLETVQSI---DLQSFLAER 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS I+   +Y  + KI ++     +   K    LP+ L+EKQ   L+
Sbjct: 65  IDGGYKAASSARLLSSIRRLFQYFYREKIRSDDPSAVIAAPKIPQRLPKDLSEKQVEDLL 124

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +      S     ++ R+ A+L +LY CGLR+SE   LT  +I   Q  +R+ GKGDK R
Sbjct: 125 NAPATEDS-----LELRDKAMLEVLYACGLRVSELTGLTFSDISLRQGVVRVVGKGDKER 179

Query: 199 IVPLLPSVRKAI--LEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ---RYIRQLR 251
           ++PL     +AI  LE Y  +  P  LN      LF   RG  +    F    +Y   L 
Sbjct: 180 LIPL---GEEAIYWLEKYIAEGRPDLLNGKTSDVLFPSKRGTKMTRQTFWHRIKYYAVLA 236

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G  LS   H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + 
Sbjct: 237 NIDGEALS--PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LR 290

Query: 312 EIYDQTHP 319
            +++Q HP
Sbjct: 291 ALHEQHHP 298


>gi|288928808|ref|ZP_06422654.1| integrase/recombinase XerD [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288329792|gb|EFC68377.1| integrase/recombinase XerD [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 304

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 149/286 (52%), Gaps = 12/286 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +++ L++ER LS  T+++Y  D R  L ++ F+         + +L    +  F +    
Sbjct: 15  YMRYLKLERNLSPNTIEAYRNDLRWLLAYVNFHG------LKVEELKLEHLDNFSASLHD 68

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q+I  RS  R LSG++SF K+L             + +    N+LP  L+  +   L  +
Sbjct: 69  QRIMPRSQARILSGVRSFFKFLLLDGFIDADPTELLVSPHVRNALPDVLSTAEVDRLEAS 128

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           + L     +KW   RN AI+ +L+ CGLR+SE ++L   N+  ++  +R+ GKGDK R+V
Sbjct: 129 IDL-----SKWEGQRNRAIVEVLFSCGLRVSELVNLKLSNLYVEEKFVRVTGKGDKERLV 183

Query: 201 PLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+       +  ++ D     +    +  +F   RG  L   +    I++     G+  +
Sbjct: 184 PISSRALDELNAWFADRNAMRIKPGEEDYVFLNRRGAHLTRTMILIMIKRQAVAAGITKT 243

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            + HTLRHSFAT LL  G DL +IQ+++GH  ++TT+IYT++++ +
Sbjct: 244 ISPHTLRHSFATALLEGGADLIAIQAMMGHEDIATTEIYTHIDTSS 289


>gi|256829239|ref|YP_003157967.1| tyrosine recombinase XerD [Desulfomicrobium baculatum DSM 4028]
 gi|256578415|gb|ACU89551.1| tyrosine recombinase XerD [Desulfomicrobium baculatum DSM 4028]
          Length = 292

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 98/317 (30%), Positives = 154/317 (48%), Gaps = 42/317 (13%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +E   +LQ+L + RGL++ T+++Y  D    L F  F +E      ++ Q+    +  ++
Sbjct: 3   EEIDAYLQHLTVIRGLAEKTVEAYGSD---LLFFRDFLSELG---GSLHQIDEHTLFLYM 56

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
              R + + + S+ R++S ++ F ++L + +    S    + + K    LP  L+  +  
Sbjct: 57  VHLRRKGLKNTSMARNISSLRGFFEFLVQERHLASSPAALLDSPKLVRKLPEVLSRDEVT 116

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+D   L+T      +  R+  +L LLY CGLR+SE +SLT  +       LR+ GKG 
Sbjct: 117 ALLDRPALNTP-----LGFRDRTMLELLYACGLRVSELVSLTAPDFDPQAGLLRVLGKGS 171

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------QR 245
           K R VPL  S    +L +         L    PLF      P    VF          Q 
Sbjct: 172 KERYVPLHDSAVSFMLSF---------LRQWRPLF-----GPKTDTVFLNRSGLGLSRQG 217

Query: 246 YIRQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             + LRRY    G+    + HTLRHSFATHLL  G DLR++Q +LGH  +  T+IYT+V 
Sbjct: 218 VWKLLRRYALEAGITRPVSPHTLRHSFATHLLEGGADLRTVQILLGHSDIMATEIYTHVQ 277

Query: 303 SKNGGDWMMEIYDQTHP 319
           S      M+ ++ + HP
Sbjct: 278 SAR----MVALHRKFHP 290


>gi|329947868|ref|ZP_08294800.1| phage integrase, SAM-like domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328523492|gb|EGF50590.1| phage integrase, SAM-like domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 306

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 146/301 (48%), Gaps = 18/301 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L ++R LS+ T ++Y  D    L FL     +      +  L   ++R +++        
Sbjct: 16  LSLQRDLSQHTARAYLVDICDLLSFLGVGEGDAPIGAALATLDLADLRDWLAALAASGHS 75

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +L R  + +++F  +  +  I T      +R  +  N LP  L  +QA  L+      
Sbjct: 76  RATLARRSASVRTFSAWAFEEGILTSDVAARLRAPRVDNRLPGVLTAQQAAQLLQTAA-D 134

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL-L 203
            + +   +  R+ AI   LY  G+R+SE + L   ++   Q TLR+ GKG K R VP  L
Sbjct: 135 LAADGDILAVRDLAIAETLYATGVRVSELVGLDVTDLDHSQRTLRVLGKGRKERTVPYGL 194

Query: 204 PSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           P+ R   LE +     ++C  D        LF G RG+ ++P   +  + +L    G+P 
Sbjct: 195 PAARA--LEGWLSRREEICAPDAGTA----LFLGARGRRIDPRAARDIVHRLCAAAGVP- 247

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRHS ATH+LS G DLRS+Q +LGH  L+TTQ YT+V+++     +  +Y+Q  
Sbjct: 248 DLGPHGLRHSAATHVLSGGADLRSVQELLGHSSLATTQRYTHVSAER----LRSVYEQAF 303

Query: 319 P 319
           P
Sbjct: 304 P 304


>gi|254494929|ref|ZP_01052592.2| phage integrase family protein [Polaribacter sp. MED152]
 gi|213690511|gb|EAQ42020.2| phage integrase family protein [Polaribacter sp. MED152]
          Length = 315

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 167/308 (54%), Gaps = 19/308 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L  E+  SK T+ +Y+ D   F  F+    ++    + + +++Y++IR++I     
Sbjct: 26  FLDYLSHEKNYSKHTVIAYQKDLNSFKSFIRINFDQ----EDLLEVNYSQIRSWIVSLVE 81

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           ++I +R++ R +S +KSF K+L+K +    + +   + LK +  +    ++K+  T+   
Sbjct: 82  EEISNRTINRKISSLKSFYKFLQKTEQIKSNPLQKHKALKVAKKVQVPFSQKEVATV--- 138

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L ++ E  ++  RN  ++ + Y  G+R +E +++  ++I    + L++ GK +K R+V
Sbjct: 139 --LESNTENSFVSIRNKLMVEIFYSTGIRRAELINIQLKDINSGSNVLKVLGKRNKERLV 196

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+L SV K  L  Y     +++ N +  LF   +G  +   +  R I      +   +  
Sbjct: 197 PILNSVLKT-LNLYLGHRKNISNNSEY-LFITEKGNKIYETLVYRVINSYFSKVSSKVKK 254

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H LRHSFATHLL+ G DL S++ +LGH  L++TQ+YT+    N  D + ++Y+Q HP 
Sbjct: 255 SPHMLRHSFATHLLNEGADLNSVKELLGHSSLASTQVYTH----NSLDAIKQVYNQAHP- 309

Query: 321 ITQKDKKN 328
              K KKN
Sbjct: 310 ---KSKKN 314


>gi|154494032|ref|ZP_02033352.1| hypothetical protein PARMER_03377 [Parabacteroides merdae ATCC
           43184]
 gi|154086292|gb|EDN85337.1| hypothetical protein PARMER_03377 [Parabacteroides merdae ATCC
           43184]
          Length = 301

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 93/297 (31%), Positives = 158/297 (53%), Gaps = 14/297 (4%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E+ LS  ++ +Y  D  +   F+   +E K        ++Y +++ F+++     I 
Sbjct: 15  LRLEKALSANSIDAYLTDLDKLTNFVE--SEGK----KYADVTYDDLQQFVARLHDIGIH 68

Query: 85  DRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
            RS  R +SGIKSF ++L     ITT+   L + + K    LP  L   +  +++D + L
Sbjct: 69  PRSQARIISGIKSFYRFLFLDDYITTDPTEL-LESPKIGLKLPEVLTVNEINSILDTIDL 127

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
                T     RN A+L +LY CGLR+SE +SL   ++  D+  ++++GKG K R+VP+ 
Sbjct: 128 -----TLPEGQRNRAMLEVLYSCGLRVSELVSLRFTDVYFDEGFIKVEGKGSKQRLVPIS 182

Query: 204 PSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            +  K I  Y YD     +    +  LF   RG  L+  +    I+Q     G+  + + 
Sbjct: 183 ETAIKEIKNYLYDRNHVAVKKGFEDILFLSRRGTALSRIMVFHIIKQQTEMAGIKKNVSP 242

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HT RHSFATHLL  G +L +IQ +LGH +++TT+IYT+++ +     ++E + ++ P
Sbjct: 243 HTFRHSFATHLLEGGANLLAIQEMLGHEKITTTEIYTHIDRQFLRKEILEHHPRSKP 299


>gi|170718451|ref|YP_001783668.1| site-specific tyrosine recombinase XerC [Haemophilus somnus 2336]
 gi|189030077|sp|B0UWL5|XERC_HAES2 RecName: Full=Tyrosine recombinase xerC
 gi|168826580|gb|ACA31951.1| tyrosine recombinase XerC [Haemophilus somnus 2336]
          Length = 295

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 96/311 (30%), Positives = 162/311 (52%), Gaps = 27/311 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +   L IER LS  TL +Y+    + ++ L     ++  I + +Q++ + +R  +++ 
Sbjct: 6   QKYYNYLRIERQLSPYTLINYQRQLEKIVVIL-----QQNDIHSWQQVTPSVVRFVLAQS 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R + + +RSL   LS ++ FL YL  +     ++ + +   K+S  LP+ ++ +Q   L+
Sbjct: 61  RKEGLHERSLALRLSALRQFLNYLVVQGELKVNSAVGISAPKQSKYLPKNMDMEQVQQLL 120

Query: 139 DNVLLHTSHETKW-IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            N       E+K  ID R+ A++ L+Y  GLR+SE  SL   +I      +R+ GKG+K 
Sbjct: 121 TN-------ESKEPIDLRDKAMMELMYSSGLRLSELQSLNLNSINIRSREVRVIGKGNKE 173

Query: 198 RIVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           RI+P      +AI ++  +     P D        LF    G  ++    Q+ +      
Sbjct: 174 RILPFGRYASQAIQQWLKVRLLFNPKDE------ALFVSQLGNRISHRSIQKRMETWGIR 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL      H LRHSFATH+L N  DLR++Q +LGH  LSTTQIYT+++ ++    + ++
Sbjct: 228 QGLNGHLNPHKLRHSFATHMLENSSDLRAVQELLGHSNLSTTQIYTHLDFQH----LAQV 283

Query: 314 YDQTHPSITQK 324
           YD+ HP   +K
Sbjct: 284 YDKAHPRAKRK 294


>gi|167945040|ref|ZP_02532114.1| tyrosine recombinase XerD [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 227

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 86/219 (39%), Positives = 123/219 (56%), Gaps = 14/219 (6%)

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           +R +  I+ F K+L K K+ +   + N+   K   SLP  ++ K+   L+D+V      +
Sbjct: 4   QRHIITIRGFYKFLIKEKLISFDPVKNIDIPKTGLSLPEVISSKEMELLIDSV------D 57

Query: 149 TKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL----L 203
           TK     RN+A+L  LYG GLR+SE +S+  +NI  + S +RI GKG K RIVP+    +
Sbjct: 58  TKNPRGLRNAAMLETLYGAGLRVSELVSMKMENINLEASFIRIFGKGSKERIVPIGSFAI 117

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
             VR  I+      P  L       LF    GKP+    F + +++  R  G+    T H
Sbjct: 118 EKVRNWIMHGR---PIILKNIPSHYLFVARAGKPMTRQGFWKLLKKYSRASGISKKITPH 174

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           T RHSFATHLL  G DLRS+Q++LGH  +STTQIYT+V+
Sbjct: 175 TFRHSFATHLLEGGADLRSVQTMLGHSDISTTQIYTHVS 213


>gi|300313582|ref|YP_003777674.1| site-specific integrase/recombinase [Herbaspirillum seropedicae
           SmR1]
 gi|300076367|gb|ADJ65766.1| site-specific integrase/recombinase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 330

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 155/314 (49%), Gaps = 22/314 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L  +R LS  T++ Y  D ++    LA   EE   I  +R+ +  +IR   ++   
Sbjct: 16  YLSFLRTQRKLSDHTVEHYGRDLQELRSLLAPAGEEHADID-LRKTTQVQIRKCAARLHA 74

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  RS+ R LS  + F  +L  +     + +  ++  KKS  LP+AL    A+ LV  
Sbjct: 75  RGLNARSIARKLSAWRGFFGWLSMQMDLAANPVDGVKAPKKSKPLPKALAADDAIRLVSQ 134

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-----------DQSTLR 189
                  ++  + A N A+  LLY  GLR+SE + +   ++ +           +++ + 
Sbjct: 135 PDPVRDPDST-LAACNRAMFELLYSSGLRVSELVGIDVADVREGGYESAGWVDLEEAEVT 193

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCP----FDLNLNIQLPLFRGIRGKPLNPGVFQR 245
           + GKG K R VP+  + R A+ ++  L       D   +    LF   RG  ++P V Q 
Sbjct: 194 VTGKGGKKRKVPVGQAARAALADWLPLRARLRKADGGPDSHA-LFLNERGARISPRVAQL 252

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            ++   R L +      H LRHSFA+H+L + GDLR++Q +LGH  ++ TQ+YT ++ + 
Sbjct: 253 RLKAHGRALEMASDVHPHMLRHSFASHVLQSSGDLRAVQEMLGHASITATQVYTALDFQR 312

Query: 306 GGDWMMEIYDQTHP 319
               + ++YDQ HP
Sbjct: 313 ----LAQVYDQAHP 322


>gi|239993652|ref|ZP_04714176.1| tyrosine recombinase [Alteromonas macleodii ATCC 27126]
          Length = 306

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 159/310 (51%), Gaps = 19/310 (6%)

Query: 19  QNWLQ----NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           Q WL     +L++ERGLS  T+++Y+    +    L  Y    +T         ++I+  
Sbjct: 12  QQWLDKFLLHLQVERGLSLHTIKNYQRQLTEVAKLLGLYEWSGLTP--------SDIKRV 63

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++  +      RS+   LS +++F +YL   +    + +  ++  K+   LP+ L+  + 
Sbjct: 64  MADAKMSGHSPRSIALRLSALRTFCQYLIDHQQLFSNPVEGIQAPKQGKPLPKQLSVDEM 123

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+ N    +S + + +  R+ A+  LLYGCGLR+SE   L   + + D  T+++ GKG
Sbjct: 124 QQLL-NASPRSSDDDEGMQLRDVAMFELLYGCGLRLSELTGLNLADCLKD-GTVKVMGKG 181

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K RI+PL    +KA+  +  + P   +   +  +F   R   ++       + ++    
Sbjct: 182 SKQRILPLGRHAQKALNAWLKVRPAYAS-PYESAVFVSKRKTRISNRQVANRLDKMASEQ 240

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            L    + H LRHSFATH+L + GDLR++Q +LGH  LSTTQ+YT+++ ++    + ++Y
Sbjct: 241 SLSQKVSPHKLRHSFATHVLESSGDLRAVQELLGHANLSTTQVYTHLDFQH----LAKVY 296

Query: 315 DQTHPSITQK 324
           D  HP   +K
Sbjct: 297 DAAHPRAHKK 306


>gi|322691424|ref|YP_004220994.1| recombinase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320456280|dbj|BAJ66902.1| recombinase [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 311

 Score =  129 bits (323), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 150/307 (48%), Gaps = 17/307 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L ++ +ERGL+  T+ +YE D  +++ +L     E   I     ++  ++  +I+  
Sbjct: 13  EQFLVHIGVERGLATATVTAYESDIAKYIDWL-----ETRGIHEPDAITKQDVEDYIAAL 67

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  RS  R L+ I  F ++   +   T      ++  K +++LP  L   +   L+
Sbjct: 68  DQAGESARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLL 127

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D      S  T  +  R+ A+L  +Y  G R+SEA      +I  D+   R+ GKG K R
Sbjct: 128 DAAAAGGS--TDPVVLRDKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQR 185

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNL--NIQLP----LFRGIRGKPLNPGVFQRYIRQLRR 252
           +VPL     +AI  Y +    +L    + ++P    LF   RGK ++       ++    
Sbjct: 186 LVPLGSYACRAITAYLNAGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGE 245

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+      HTLRHSFATHL+  G D+R++Q +LGH  ++TTQIYT+V+ +     ++E
Sbjct: 246 RAGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPET----LIE 301

Query: 313 IYDQTHP 319
            Y  +HP
Sbjct: 302 TYLTSHP 308


>gi|300858389|ref|YP_003783372.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41]
 gi|300685843|gb|ADK28765.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41]
 gi|302206103|gb|ADL10445.1| site-specific tyrosine recombinase XerD [Corynebacterium
           pseudotuberculosis C231]
 gi|302330656|gb|ADL20850.1| site-specific tyrosine recombinase XerD [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276340|gb|ADO26239.1| site-specific tyrosine recombinase XerD [Corynebacterium
           pseudotuberculosis I19]
          Length = 310

 Score =  129 bits (323), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 150/304 (49%), Gaps = 11/304 (3%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL-SYT-EIRAFISKR 78
           WL +L IERG+S  TL +Y  D +++L ++     + + I T R + SY  ++R      
Sbjct: 11  WLTHLAIERGVSANTLSNYRRDVQRYLDWIESRGIDDLGILTSRDVESYVLDLRRGDPDT 70

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q +   S  R+L   +   K+     + +      +        LP  L+  +   L+
Sbjct: 71  GKQPLAASSAGRALVVARGLHKFAMMEGLISVDVAGEVSPPSTGRHLPDTLSVTEVEELI 130

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRIQGKGD 195
             +   T +     D R++A++ LLYG G RISE ++LT   +    + +  LRI GKGD
Sbjct: 131 SAI--PTDNIATPEDLRDAALIELLYGTGARISEIMNLTVDEVTVLEETEGMLRIVGKGD 188

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RIVP+    +KA+  Y       L       LF   RG  L+     + ++   R  G
Sbjct: 189 KHRIVPVGSMAQKALRRYLVRARPQLTKGKSHALFLNKRGGALSRQSAWQILKSSARRAG 248

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + HTLRHS+A+HLL  G D+R +Q +LGH  ++TTQIYT++ + N    +  ++ 
Sbjct: 249 VQKDISPHTLRHSYASHLLEGGADVRVVQELLGHSSVTTTQIYTHITADN----LRIVWS 304

Query: 316 QTHP 319
           Q+HP
Sbjct: 305 QSHP 308


>gi|78189085|ref|YP_379423.1| tyrosine recombinase XerD [Chlorobium chlorochromatii CaD3]
 gi|78171284|gb|ABB28380.1| Tyrosine recombinase XerD [Chlorobium chlorochromatii CaD3]
          Length = 304

 Score =  129 bits (323), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 158/307 (51%), Gaps = 25/307 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L +ER  S  T  SY  D  ++L+F+    +E+ T   I +++   I  F+++  
Sbjct: 14  SFLNYLIVERNFSANTRSSYHNDLHRYLLFV----QEQAT--PIAEITSKVIDRFLAELV 67

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +   S+ R++S I+SF K+L   ++++ +    +   KK++ LP  LN  + L L++
Sbjct: 68  ALGLETTSMARNISTIRSFHKFLHNERLSSNNPAERLHLPKKAHYLPAVLNLSETLALLE 127

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              +     T  +  R+ A+L LLY  G+R +E +S+  +++  D   +RI GKG K R+
Sbjct: 128 APSIMQPAPTYAL--RDRAMLELLYATGVRATELISIQQEHLYSDAGFIRIFGKGSKERL 185

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-------LFRGIRGKPLNPGVFQRYIRQLRR 252
           VP+  S    +  Y         L +QL        LF   RG  L+       ++    
Sbjct: 186 VPIGASATLWVQRYQK------ELRVQLVKAHSNDFLFLNSRGGKLSRMSLFEMVKTYSV 239

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+  S + HTLRH+FATHL+  G DLR++Q +LGH  + TTQIYT+++      ++ E
Sbjct: 240 VAGITKSISPHTLRHTFATHLIEGGADLRAVQEMLGHSSIVTTQIYTHLDR----SFIKE 295

Query: 313 IYDQTHP 319
           ++   HP
Sbjct: 296 VHKTFHP 302


>gi|160915107|ref|ZP_02077320.1| hypothetical protein EUBDOL_01115 [Eubacterium dolichum DSM 3991]
 gi|158432906|gb|EDP11195.1| hypothetical protein EUBDOL_01115 [Eubacterium dolichum DSM 3991]
          Length = 311

 Score =  129 bits (323), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 150/320 (46%), Gaps = 43/320 (13%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q++L  ++     ++ T+ SY  D RQ++ ++     +   I+ +  + Y+ ++ F+   
Sbjct: 8   QDYLHYIQAIDRKAEATIASYTNDLRQYVQYM-----QTCKIEEVENIDYSHVQDFLEYL 62

Query: 79  RTQKIGDR-----------SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
           R     ++           S+   ++ +  F +YL        + + N+R  K    LP 
Sbjct: 63  RQDHYDEKGQCIHKKKSSASINHMITSLHVFHRYLSMTYPKLLNPVQNIRTKKAVQHLPV 122

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
             N +    L+D      S      +  + AI+ LLYGCGLR+SE  SL  Q +  +Q  
Sbjct: 123 YFNMQDIERLLD------SFRDSDAEIMDKAIVELLYGCGLRVSECCSLMLQQVYLEQGF 176

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEY--------YDLCPFDLNLNIQLPLFRGIRGKPLN 239
           LR+ GKG+K R+VP+    +KA+  Y        Y    F         +F   +G+ + 
Sbjct: 177 LRVIGKGNKERMVPMHARCKKALENYLTKVRKQRYARSNF---------VFINAKGQEIT 227

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                  I++    LGL    +AH+ RHSFA+HLL  G DLR +Q +LGH  +STTQIYT
Sbjct: 228 RQYIHVMIKKRLLALGLDERLSAHSFRHSFASHLLDGGADLRVVQELLGHSDISTTQIYT 287

Query: 300 NVNSKNGGDWMMEIYDQTHP 319
           +V +K     +  +Y   HP
Sbjct: 288 HVQNKR----LQSVYTSFHP 303


>gi|86158112|ref|YP_464897.1| tyrosine recombinase XerD subunit [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774623|gb|ABC81460.1| tyrosine recombinase XerD subunit [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 314

 Score =  129 bits (323), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 157/300 (52%), Gaps = 15/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L ++ +E+GL++ ++++Y  D R++L  L     +++ +    ++  +EI+A +++   
Sbjct: 27  FLAHVRVEKGLAENSVEAYGRDLRRYLEHL-----DELGVDAWERVGRSEIQAHLAELVR 81

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  RS  R+LS I+S  + L   ++T+      + + +    LP  L+  +    VD 
Sbjct: 82  RGLSPRSQARALSAIRSLHRLLAAERVTSADPSDEIESPRPGRRLPGLLSHDE----VDR 137

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL           R+ A+L LLY  GLR+SE +SL   ++  +   L  +GKGDK RIV
Sbjct: 138 -LLAAPDVRSAAGIRDRAMLELLYATGLRVSELVSLQLNDVNLETRVLVARGKGDKERIV 196

Query: 201 PLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+      A+  Y  +    L +      LF   RG  +    F + + +  R  G+   
Sbjct: 197 PVGAPAADAVKAYLAVARERLLHGRRSKDLFVTPRGGRMTRQGFAKILDRCARRAGIRRR 256

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + H LRHSFATHLL  G DLR++Q +LGH  +STTQIYT+V+  +    +  +YD+ HP
Sbjct: 257 ISPHKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHVDRTH----VKRLYDRFHP 312


>gi|83748651|ref|ZP_00945669.1| Integrase/recombinase (XerC/CodV family) [Ralstonia solanacearum
           UW551]
 gi|207741931|ref|YP_002258323.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum
           IPO1609]
 gi|83724695|gb|EAP71855.1| Integrase/recombinase (XerC/CodV family) [Ralstonia solanacearum
           UW551]
 gi|206593317|emb|CAQ60244.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum
           IPO1609]
          Length = 329

 Score =  129 bits (323), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 99/325 (30%), Positives = 161/325 (49%), Gaps = 39/325 (12%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L+ ER LS  TL++Y   TR+  +           I   R L +  IR+ I+    
Sbjct: 23  YLDVLKFERQLSPHTLENY---TRELAVLQRLGARFATGIDLTRLLPH-HIRSMIAHLHG 78

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVD 139
             +  RS+ R+LS  + + K+L  R+    +N ++ +R  K    LP+AL+ +QA+ L++
Sbjct: 79  NGLSGRSIARALSVWRGWYKWLALREAAVTANPVDGVRAPKSPKRLPKALSVEQAVALME 138

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----------MD-DQSTL 188
             L     ET     R+ A+  L Y CGLR+SE + L  +++          +D +   +
Sbjct: 139 Q-LPGDDPET----IRDRAVNELFYSCGLRLSELVGLDLRHVKAGDYASAGWLDLEAREV 193

Query: 189 RIQGKGDKIRIVPL---------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
            + GKG+K R VP+              +  L   D  P D +      LF   RGK L 
Sbjct: 194 MVLGKGNKYRTVPVGSKAAEALAAWLAARPQLARPDAAPEDAHA-----LFLSARGKRLT 248

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               Q  +++     G+P     H LRHSFATH+L + GDLR++Q +LGH  +++TQ+YT
Sbjct: 249 QRQIQIRMKRNAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT 308

Query: 300 NVNSKNGGDWMMEIYDQTHPSITQK 324
           +++ ++    + +IYDQ HP   +K
Sbjct: 309 SLDFQH----LAKIYDQAHPRAKKK 329


>gi|302342643|ref|YP_003807172.1| tyrosine recombinase XerD [Desulfarculus baarsii DSM 2075]
 gi|301639256|gb|ADK84578.1| tyrosine recombinase XerD [Desulfarculus baarsii DSM 2075]
          Length = 311

 Score =  129 bits (323), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 95/302 (31%), Positives = 147/302 (48%), Gaps = 18/302 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L  ERGL++ TL +Y  D      FL         +Q   Q+    + A+++    
Sbjct: 23  YLDHLAGERGLARNTLAAYADDLADICGFL-----HDNGVQGWEQVDELHMVAYLAHAAK 77

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   S  R LS  +  + YL +R+  +   +  +R  KK+  LP  L++++ L L   
Sbjct: 78  EGLAANSRARRLSAARGLVGYLLRREKLSADPLATLRGPKKTAGLPHFLSQEEMLRL--- 134

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L T      +  R+ A+L  +YG GLR+SE + L    I      L ++GKG K R+V
Sbjct: 135 --LETPAADSDLGRRDRAMLEAMYGAGLRVSEVIDLGVGQIQFQIGCLLVRGKGAKERLV 192

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           PL   V    LE Y   P    L  Q     +F   RG  L+     + + +     G+ 
Sbjct: 193 PL-HQVAIQRLEDYLRGPRQNLLRGQKASDTVFLNARGGKLSRMGVWKILAKHVAAAGID 251

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + HTLRH+FATHLL  G DLRS+Q +LGH  + TTQIYT++  K     +++++ Q 
Sbjct: 252 HHVSPHTLRHTFATHLLEGGADLRSVQLMLGHADIGTTQIYTHLGMKR----LVDVHRQC 307

Query: 318 HP 319
           HP
Sbjct: 308 HP 309


>gi|254282053|ref|ZP_04957021.1| tyrosine recombinase XerC [gamma proteobacterium NOR51-B]
 gi|219678256|gb|EED34605.1| tyrosine recombinase XerC [gamma proteobacterium NOR51-B]
          Length = 304

 Score =  129 bits (323), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 146/292 (50%), Gaps = 16/292 (5%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R +S  T+ +Y  D   F  F            + R +  + +R++  + + Q     ++
Sbjct: 20  RRMSHHTVSNYRRDLNHFEEFC-----RASNCTSPRDIKESVVRSWAGQMQRQGKAPATI 74

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           +R LS ++S+ K+L  R     +  + +R  ++   LP+ +   +   L       T   
Sbjct: 75  QRGLSSVRSYFKHLAARHADISNPAIGIRAPRRPRKLPKTIEADRIGALFQRPAEST--- 131

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
              ++ R+ AI  LLY  GLR++E + +  +++   +  + + GKGDK R VP+  +  K
Sbjct: 132 ---LEKRDQAIAELLYSSGLRLAELVDVNLEDLDRREGVITVTGKGDKTRTVPVGVAALK 188

Query: 209 AILEYYDLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           A+  +    P     L+ + PLF   RG  L     Q  +++L +   L  +   H LRH
Sbjct: 189 ALEAWIACRPIGQEVLSAKAPLFVNQRGTRLGQRSVQDRLKKLAKATHLGQNLHPHMLRH 248

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           SFATHLL + GDLR++Q +LGH  +STTQIYT+++ ++    + ++YD  HP
Sbjct: 249 SFATHLLESSGDLRAVQELLGHANISTTQIYTHLDFQH----LSKVYDTAHP 296


>gi|187250579|ref|YP_001875061.1| integrase family protein [Elusimicrobium minutum Pei191]
 gi|186970739|gb|ACC97724.1| Integrase family protein [Elusimicrobium minutum Pei191]
          Length = 295

 Score =  129 bits (323), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 148/291 (50%), Gaps = 17/291 (5%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +  S+ TL++Y  D +    ++A   E  +T       ++T++R ++           ++
Sbjct: 18  KNFSRHTLRAYTADLKDVENYMA---EHNLTAAEF--FTHTKLRGYLGVTSEGDYKKNTV 72

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R +S ++SF KYL K ++   +    +   K+   LP+ L +++   L+D     T+  
Sbjct: 73  LRKISVMRSFAKYLLKHEVIKNNPFKLLPLPKREKLLPKFLTQEETDRLID-----TAAN 127

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
              + AR+ A+  L+Y  GLR SE   L+ ++I  +   +R+ GKG K R+VP+     +
Sbjct: 128 QGKLPARDKALFELIYSSGLRRSEVTGLSIKDIDLNLGVVRVMGKGSKERLVPITDLAIE 187

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           A+ EY          N   PLF    G  L        ++ +     L    TAH+LRHS
Sbjct: 188 ALKEYLSTRGV---YNSGDPLFLNRLGGRLTGDGLAYLVKNITIKANLARKVTAHSLRHS 244

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           FATH+L+NG DLRS+Q +LGH  LS TQ+YT+V+     D + +IY QTHP
Sbjct: 245 FATHMLNNGCDLRSLQEMLGHKSLSATQVYTHVSL----DRLKKIYGQTHP 291


>gi|294651114|ref|ZP_06728450.1| site-specific tyrosine recombinase [Acinetobacter haemolyticus ATCC
           19194]
 gi|292823008|gb|EFF81875.1| site-specific tyrosine recombinase [Acinetobacter haemolyticus ATCC
           19194]
          Length = 308

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 164/305 (53%), Gaps = 22/305 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+   I +  S  T+ +Y+ D   F  F  +   +++ +Q +     +++R +++ R  
Sbjct: 15  WLKE-RIIQNQSAHTISAYQRDLSDFFRFCEY---KQLQLQDV---EASDLREYLASRVE 67

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           Q ++   SL+R+L+ I+ F+K+  + +    +   +++  ++   LP  ++    +  V+
Sbjct: 68  QDQLSSSSLQRNLTSIRQFMKWAAQGQYLQHNPSADLKLKRQPRPLPGMID----IETVN 123

Query: 140 NVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            +L   + E K ID     R+ A+L LLY  GLR++E   LT ++I  ++  LRI GKG+
Sbjct: 124 QILDQAAPE-KPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLLRITGKGN 182

Query: 196 KIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K RIVP     +++++E+  +   +  +      +F   RG  L P   +  ++   +  
Sbjct: 183 KTRIVPFGTKAKQSLIEWLKIYRIWQGSFMADSAVFISQRGGALMPRQIENRVKLQAQRA 242

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+ +    H LRH FA+H+LS   DLRS+Q +LGH  LSTTQIYT+V+     D + ++Y
Sbjct: 243 GVNVDLHPHLLRHCFASHMLSASRDLRSVQEMLGHSNLSTTQIYTHVDF----DQLAKVY 298

Query: 315 DQTHP 319
           DQ HP
Sbjct: 299 DQAHP 303


>gi|313813390|gb|EFS51104.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL025PA1]
 gi|327334220|gb|EGE75934.1| putative tyrosine recombinase XerC [Propionibacterium acnes
           HL097PA1]
          Length = 315

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 137/285 (48%), Gaps = 9/285 (3%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T++ Y  D    +     + ++ +      ++  +++RA+++  R       +++R  S 
Sbjct: 38  TIRGYRADLIDLMGHAHSHGDDALG-----RIGTSQVRAWLADTRVAGASAATMQRRWSA 92

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
            + F ++     + +      + + K    LP  L   QA  ++D  +    H+     A
Sbjct: 93  ARVFFRWAANEGLISADPTTALNSAKVPKRLPATLGVDQARHILDEAVAQARHDESPHGA 152

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R++AIL +LYG GLR+ E   L   ++   + T+++ GKGDK R VP+     +AI  + 
Sbjct: 153 RDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVKVTGKGDKERTVPMGAPALRAIDTWL 212

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                 +  +    LF G RG+ ++  V +R +    R          H LRH+ ATHLL
Sbjct: 213 PRREEWVGPHSGQALFLGARGRRIDQRVVRRVVHTHLRAEPDSPDLGPHGLRHAMATHLL 272

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
             G DLR++Q ILGH  L+TTQIYT+V+++     +   + Q HP
Sbjct: 273 EGGADLRTVQDILGHESLATTQIYTHVSTER----LRTAFRQAHP 313


>gi|325983273|ref|YP_004295675.1| tyrosine recombinase XerD [Nitrosomonas sp. AL212]
 gi|325532792|gb|ADZ27513.1| tyrosine recombinase XerD [Nitrosomonas sp. AL212]
          Length = 303

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 90/297 (30%), Positives = 155/297 (52%), Gaps = 15/297 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E GLS+ TL SY  D +   +F  +      +   + + + +++  F++ R   K+ 
Sbjct: 18  LWLEDGLSRNTLDSYRNDLQ---LFSEWLKRRNPSNSMLTEATNSDLLEFLASRVAAKMK 74

Query: 85  DRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
             +  R LS +K F ++L ++ KI  + + LN+   K    LP +L+EK+       +LL
Sbjct: 75  ASTTSRELSSLKRFYRFLLRQGKIAIDPS-LNIETPKLQRHLPESLSEKEV-----ELLL 128

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
                 + +  R+ A+L  LY  GLR+SE ++L    +  D   LR+ GKG K R+ P+ 
Sbjct: 129 SAPDLAQPLGLRDRAMLEALYASGLRVSELINLKYSQVSMDMGVLRVMGKGRKERLAPVG 188

Query: 204 PSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
               + +  Y  +  P  LN  +   +F   RG  +    F   I++  + +G+    + 
Sbjct: 189 EESLQWLNRYTKEARPLLLNGIVTDTIFVTTRGAAMTRQAFWYLIKRYAQLVGIAKQLSP 248

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT++  +     + +++ + HP
Sbjct: 249 HTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHIARER----LKQLHAKHHP 301


>gi|207727540|ref|YP_002255934.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum MolK2]
 gi|206590777|emb|CAQ56389.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum MolK2]
          Length = 329

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 99/325 (30%), Positives = 161/325 (49%), Gaps = 39/325 (12%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L+ ER LS  TL++Y   TR+  +           I   R L +  IR+ I+    
Sbjct: 23  YLDVLKFERQLSPHTLENY---TRELAVLQRLGARFATGIDLTRLLPH-HIRSMIAHLHG 78

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVD 139
             +  RS+ R+LS  + + K+L  R+    +N ++ +R  K    LP+AL+ +QA+ L++
Sbjct: 79  NGLSGRSIARALSVWRGWYKWLALREAAVTANPVDGVRAPKSPKRLPKALSVEQAVALME 138

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----------MD-DQSTL 188
             L     ET     R+ A+  L Y CGLR+SE + L  +++          +D +   +
Sbjct: 139 Q-LPGDDPET----IRDRAVNELFYSCGLRLSELVGLDLRHVKAGDYASASWLDLEAREV 193

Query: 189 RIQGKGDKIRIVPL---------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
            + GKG+K R VP+              +  L   D  P D +      LF   RGK L 
Sbjct: 194 MVLGKGNKYRTVPVGSKAAEALAAWLAARPQLARPDAAPEDAHA-----LFLSARGKRLT 248

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               Q  +++     G+P     H LRHSFATH+L + GDLR++Q +LGH  +++TQ+YT
Sbjct: 249 QRQIQIRMKRNAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT 308

Query: 300 NVNSKNGGDWMMEIYDQTHPSITQK 324
           +++ ++    + +IYDQ HP   +K
Sbjct: 309 SLDFQH----LAKIYDQAHPRAKKK 329


>gi|325280456|ref|YP_004252998.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712]
 gi|324312265|gb|ADY32818.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712]
          Length = 307

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 156/295 (52%), Gaps = 15/295 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +E+ LS  ++++Y  D ++    LA Y  +K  + T   +SY  ++ ++       + +R
Sbjct: 16  LEKSLSSNSVEAYLNDIKK----LAKYCADKHHVTTPDAISYDHLKDYLMFINEVGVTNR 71

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           +  R +S I+SF K+L        +    +   K    LP  L  ++   ++++V ++  
Sbjct: 72  TQARCISSIRSFYKFLVFDGQLENNPTKLLEAPKIGRKLPNILTTEEIDAMLNSVEMY-- 129

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
              K    RN AI+ +LY CGLR+SE +S+   NI   Q  ++I+GKG+K R++PL  + 
Sbjct: 130 ---KPEAQRNKAIIEMLYSCGLRVSELISIKLSNINFRQGIVKIEGKGNKERMIPLSKNA 186

Query: 207 RKAILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           ++ I +Y  +     ++    +  LF   RG  L+  +    I+ L    G+  + + HT
Sbjct: 187 KQEIKQYMKVYRDYLEIEKGYEDVLFLNKRGTALSRVMVFNIIKHLATRAGIKKNVSPHT 246

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            RHSFA+HL+S G DLR++Q +LGH  + TT+IYT+++      ++ +  ++ HP
Sbjct: 247 FRHSFASHLVSGGADLRAVQDMLGHESILTTEIYTHLDDH----YLKDTINKFHP 297


>gi|260583822|ref|ZP_05851570.1| integrase/recombinase XerC [Granulicatella elegans ATCC 700633]
 gi|260158448|gb|EEW93516.1| integrase/recombinase XerC [Granulicatella elegans ATCC 700633]
          Length = 294

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 147/294 (50%), Gaps = 17/294 (5%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T+++Y+ D  QFL+FL     ++I +  + +++  ++R ++ K   Q+    S+ R LS 
Sbjct: 3   TVEAYQRDIEQFLMFL-----KEIPLTKLSEVTAVDVRIYLGKLHQQQYNRSSISRFLSS 57

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           ++SF +YL +     E+   ++   K    LP    E +    + ++        + +D 
Sbjct: 58  LRSFYQYLLEHDFVEENPFASISYKKGQKRLPEFFYEDEMEKFIASI-----DGNQPLDQ 112

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           RN A++ +LY  G+R+SE   LT Q +      + + GKG K R VP+     +A+  Y 
Sbjct: 113 RNRALIEVLYATGMRVSELTELTLQQLDLKNGVILVIGKGSKERYVPIGDFATEALQLYL 172

Query: 215 DLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           +     L    +     +F    G P+     +  + QL +  GL L    H LRH+FAT
Sbjct: 173 EESRSSLMSQYKKEHASVFVNHLGDPITTTGVRYILNQLLQESGLQLKIHPHMLRHTFAT 232

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           HLL+NG D++++Q +LGH  LS+TQIYT+V      D + + Y    P   Q++
Sbjct: 233 HLLNNGADMKTVQELLGHVSLSSTQIYTHVTK----DALQQNYQLYFPRAKQEE 282


>gi|305681436|ref|ZP_07404243.1| tyrosine recombinase XerD [Corynebacterium matruchotii ATCC 14266]
 gi|305659641|gb|EFM49141.1| tyrosine recombinase XerD [Corynebacterium matruchotii ATCC 14266]
          Length = 305

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 86/306 (28%), Positives = 146/306 (47%), Gaps = 18/306 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK--- 77
           WL +L++E+G S  TL +Y  D  +++ +L       + +  + Q++ +++ A++++   
Sbjct: 9   WLTHLKVEKGYSSNTLSNYRRDLYRYVTWL-----HAVGVTDLNQVTTSQVEAYVTELRR 63

Query: 78  ----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
               R  + +   S  R+L   +   K+     + T     ++        LP  L   +
Sbjct: 64  GDPDRNIKPLAVSSAARALIVARGLHKFALLEGLVTTDVAADVSPPATGRHLPDVLTIAE 123

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D +   T      ID R+ A++ LLYG G RISE  +LT  N  D+   LRI GK
Sbjct: 124 VTQLIDAI--PTDDTASPIDLRDRALIELLYGTGARISEITALTVDNFHDNDGMLRITGK 181

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R+VP+      A+ +Y               L    RG+ L+       ++     
Sbjct: 182 GNKQRLVPVGSQAMAAVDQYLVRARPVFATGASHALLLNTRGRTLSRQSAWAVLKTAAAR 241

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    + HTLRHSFATHLL  G   R +Q +LGH  ++TTQIYT+V+++N    + + 
Sbjct: 242 AHITKDISPHTLRHSFATHLLEGGAGERVVQELLGHSSVTTTQIYTHVSAEN----LRQA 297

Query: 314 YDQTHP 319
           +  +HP
Sbjct: 298 WVMSHP 303


>gi|116333414|ref|YP_794941.1| integrase [Lactobacillus brevis ATCC 367]
 gi|116098761|gb|ABJ63910.1| tyrosine recombinase XerD subunit [Lactobacillus brevis ATCC 367]
          Length = 298

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 152/308 (49%), Gaps = 15/308 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL  +  ++   L +E+GL+  ++ SY  + R    +LA   ++ +T  + +      I 
Sbjct: 3   ELATQVADFGHYLTVEQGLAANSVTSYTQELRNLGTYLA---QQHLT--SFKDADRLTIM 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           A++S          S+  ++S ++ F +YL +    T + + N+   K +  LP  L   
Sbjct: 58  AYLSNLTATGKSRNSVIHAVSALRKFYRYLVQTHQMTTNPMANVAAPKHAEHLPAVLTVA 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +    VD +L      TK+   R+ AIL ++Y  GLR+SE + L   ++  +   ++  G
Sbjct: 118 E----VDRLLAAPDTTTKY-GLRDRAILEVMYATGLRVSELVHLKLADLHLEMGLIQTLG 172

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KGDK RI+P+       I  Y     P  L       LF    G  L+     + I+Q  
Sbjct: 173 KGDKERIIPIGDVATDWINRYLQTSRPVLLKQRTSPYLFLNAHGGGLSRQAIWQKIKQYV 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               +    T HTLRHSFATH+L NG DLR +Q +LGH  ++TTQIYT+++ K     ++
Sbjct: 233 AVAQINKDVTPHTLRHSFATHILENGADLRVVQELLGHADITTTQIYTHISKKR----LV 288

Query: 312 EIYDQTHP 319
           ++YDQ HP
Sbjct: 289 KVYDQYHP 296


>gi|88855485|ref|ZP_01130149.1| tyrosine recombinase [marine actinobacterium PHSC20C1]
 gi|88815392|gb|EAR25250.1| tyrosine recombinase [marine actinobacterium PHSC20C1]
          Length = 311

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 156/306 (50%), Gaps = 20/306 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L++L IERGLS+ TL +Y  D   +L FL   +E  +   +   ++  ++ AF    
Sbjct: 18  ERFLRHLAIERGLSQNTLAAYRRDLDSYLGFL---SERDLAEPS--AITADDVAAFAHSL 72

Query: 79  RT---QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           R    + +   S+ R LS ++    +     + ++     +   K++  LP+A+  +Q  
Sbjct: 73  RVDPERPLAASSVARMLSTVRGLHTFFVDESLVSDDVAHKVAIPKQTMRLPKAITIEQ-- 130

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
             + +VL   + +   +  RN+A+L LLY  G R+SE  +L   +++D    +R+ GKG+
Sbjct: 131 --MSSVLASFAGD-DVVSLRNTALLELLYATGARVSEVTALNVDDMIDGD-VVRLLGKGN 186

Query: 196 KIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRY 253
           K RIVP+    + AI +Y     P         P LF G RG  L+       I+     
Sbjct: 187 KQRIVPVGSFAQAAIEKYLVRSRPVLSAKGTATPALFLGARGARLSRQNVWLIIQSAAER 246

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           + L L  + HT RHSFATHLLS G D+R +Q +LGH  ++TTQIYT V +    D + ++
Sbjct: 247 VNLGLDISPHTFRHSFATHLLSGGADVRVVQELLGHSSVATTQIYTLVTA----DTLRDM 302

Query: 314 YDQTHP 319
           Y   HP
Sbjct: 303 YTTAHP 308


>gi|24215183|ref|NP_712664.1| integrase/recombinase XerD [Leptospira interrogans serovar Lai str.
           56601]
 gi|45657354|ref|YP_001440.1| putative integrase/recombinase protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|34222802|sp|Q7ZAM7|XERD_LEPIN RecName: Full=Tyrosine recombinase xerD
 gi|73920480|sp|Q72SA5|XERD_LEPIC RecName: Full=Tyrosine recombinase xerD
 gi|24196257|gb|AAN49682.1| integrase/recombinase XerD [Leptospira interrogans serovar Lai str.
           56601]
 gi|45600593|gb|AAS70077.1| putative integrase/recombinase protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 298

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 151/302 (50%), Gaps = 16/302 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           QN+ + L +E+GLS  ++ SY  D  +F  FL     EK  I  ++ +   +I  F+++ 
Sbjct: 10  QNFQEYLSVEKGLSDNSIYSYGYDLNKFKNFL-----EKEHIDFLK-VQADDIMRFLNEE 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + +KI  +++ R +  I+ F K+LK  K    +    +   +   S+P  L + +   L 
Sbjct: 64  KDRKISSKTIAREVVAIRQFYKFLKDEKKLDTNPTEKIETPEVMRSIPDYLTQDEIEELF 123

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            ++      E    + R+  I  LLY  GLRISEA +L   ++  +  TL ++GKG + R
Sbjct: 124 ASI-----KEDNLYELRDKCIFELLYSSGLRISEACNLRLNDMDLEGMTLTVEGKGGRQR 178

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP        +  Y     PF L       LF   +G  +N     R +    +   + 
Sbjct: 179 LVPFGEKSLDILNRYLKQSRPFILKSRNCEYLFVSKKGSYINRKSVWRLLNHYIKRTSIL 238

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T HTLRHSFATHLL N  DL+S+Q +LGH  ++TTQIYT++ +K     + E++ + 
Sbjct: 239 KKVTPHTLRHSFATHLLENHADLKSVQELLGHIDIATTQIYTHMANKT----LREVHKKF 294

Query: 318 HP 319
           HP
Sbjct: 295 HP 296


>gi|323358629|ref|YP_004225025.1| site-specific recombinase XerD [Microbacterium testaceum StLB037]
 gi|323275000|dbj|BAJ75145.1| site-specific recombinase XerD [Microbacterium testaceum StLB037]
          Length = 309

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/318 (31%), Positives = 148/318 (46%), Gaps = 22/318 (6%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE--EKITIQTIRQLSYT 69
            EL +  + +L+++ +ERGLS  T+ +Y  D       LA Y E      +  I  ++  
Sbjct: 1   MELERAVEGYLRHVALERGLSDHTVAAYRRD-------LAVYIEWLRGRGVDAIETVTPA 53

Query: 70  EIRAFISKRRTQKI--GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
            I  F ++R + +      SL R  S ++   ++L       +     +R  K    LP+
Sbjct: 54  LIADFAAERASAEPPPASSSLARLQSSVRGLHRFLVLEGRVDDDPSGRLRPPKAPRRLPK 113

Query: 128 ALNEKQALTLVDNVLLHTSHETKWID----ARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           AL   Q   L+D            +      R+ A+L LLY  G R+SE + L   + + 
Sbjct: 114 ALTIGQVNELLDAAGPAPGSSDASVAEPAAVRDRALLELLYATGARVSEIVQLDVDDTVH 173

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLP-LFRGIRGKPLNPG 241
               LR++GKGDK R+VP+    R AI  Y   + P         P LF G+RG PL+  
Sbjct: 174 GD-LLRVRGKGDKERVVPVGSYARAAIEAYLTRVRPALAAKGRATPRLFLGVRGAPLSRQ 232

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                I+       L    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT+V
Sbjct: 233 SAWLIIQAAAERASLTAHVSPHTLRHSFATHLLQGGADVRVVQELLGHASVATTQIYTHV 292

Query: 302 NSKNGGDWMMEIYDQTHP 319
                 D + ++Y   HP
Sbjct: 293 TV----DALRDVYAGAHP 306


>gi|302035680|ref|YP_003796002.1| tyrosine recombinase xerC [Candidatus Nitrospira defluvii]
 gi|300603744|emb|CBK40076.1| Tyrosine recombinase xerC [Candidatus Nitrospira defluvii]
          Length = 317

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 156/308 (50%), Gaps = 21/308 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +++  S  T+++Y  D  QF  F A   ++         ++   IR F++ R
Sbjct: 6   RTFLDVLAVQQNASSQTIRAYTSDLAQFHAF-ALGVQQPGGTLVPESVTPALIREFLAAR 64

Query: 79  RTQKIGDR--SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              + GD+  SL R L+ ++SF +YL +      +   ++R  K    LP+ L+  Q LT
Sbjct: 65  --DRTGDKKTSLARKLACLRSFFRYLVRIGQLDVNPAEDVRAPK----LPKHLS--QVLT 116

Query: 137 LVD-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
             D   L+     T+ +  R+ AIL  LY  G R+SE + +   +I   +  +R++GKG 
Sbjct: 117 KDDAGALMEFPGGTERVGLRDRAILETLYSTGARVSELVGMNCDDISRSEGLVRLRGKGR 176

Query: 196 KIRIVPLLPSVRKAILEYY---DLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           K R++PL     +AI  Y+      P      +    +FR  RG  L      R + +  
Sbjct: 177 KERVIPLGIIALEAIDAYHAQIQAVPGPSSGRSDAAAVFRNSRGGRLTTRTIARIVAKYS 236

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R L    +   HTLRHSFATHLL  G DLR+IQ +LGH  LSTTQ YT++ +    D ++
Sbjct: 237 RQL-TGGAVHPHTLRHSFATHLLDEGADLRAIQEMLGHASLSTTQKYTHLAT----DQLL 291

Query: 312 EIYDQTHP 319
            +YD+THP
Sbjct: 292 ALYDRTHP 299


>gi|227813261|ref|YP_002813270.1| tyrosine recombinase XerC [Bacillus anthracis str. CDC 684]
 gi|227007518|gb|ACP17261.1| tyrosine recombinase XerC [Bacillus anthracis str. CDC 684]
          Length = 299

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 156/311 (50%), Gaps = 31/311 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R +++  
Sbjct: 8   QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDITYADVRLYLTTL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137
             +K+  +S+ R +S ++S  ++L  R+   + N   + +L KK  S+P     K     
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIP-----KFLYAE 116

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               L   S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG K 
Sbjct: 117 ELEELFEASDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248
           R +P     + A++ Y +      N   QL          +F   +G PL     +  + 
Sbjct: 177 RYIPFGSYAQDALITYIE------NGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLN 230

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L +   L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+     +
Sbjct: 231 ELIKKASLTMRISPHILRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 286

Query: 309 WMMEIYDQTHP 319
            +  +Y + HP
Sbjct: 287 RLRSVYMKHHP 297


>gi|317049380|ref|YP_004117028.1| tyrosine recombinase XerD [Pantoea sp. At-9b]
 gi|316950997|gb|ADU70472.1| tyrosine recombinase XerD [Pantoea sp. At-9b]
          Length = 297

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 155/303 (51%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L IER L++ TL SY  D +    +L  +    +T++ +      +++ F+++R
Sbjct: 8   EQFLDTLWIERNLAQNTLASYRQDLQTLTGWLHHHERTLLTLEAL------DLQQFLAER 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R+LS I+   +YL + K+ ++     +   K    LP+ L+E Q    V
Sbjct: 62  VEGGYKATSSARTLSAIRRLFQYLYREKLRSDDPSALLSAPKLPQRLPKDLSESQ----V 117

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           + +L   S E   ++ R+ A+L LLY  GLR+SE + LT  ++   Q  +R+ GKG+K R
Sbjct: 118 ERLLQAPSTEIP-LELRDKAMLELLYATGLRVSELVGLTLSDVSLRQGVVRVIGKGNKER 176

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+       I  Y     P+ LN      LF   R + +    F   I+      G+ 
Sbjct: 177 LVPMGEEAIYWIEHYMTHGRPWLLNGQTLDVLFPSNRAQKMTRQTFWHRIKHYALLAGID 236

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  ++ Q
Sbjct: 237 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRLLHQQ 292

Query: 317 THP 319
            HP
Sbjct: 293 HHP 295


>gi|157960633|ref|YP_001500667.1| tyrosine recombinase XerD [Shewanella pealeana ATCC 700345]
 gi|157845633|gb|ABV86132.1| tyrosine recombinase XerD [Shewanella pealeana ATCC 700345]
          Length = 300

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/300 (31%), Positives = 150/300 (50%), Gaps = 16/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L   +GLS  TL +Y  D R    +L    ++ +T       S  +IR ++++R  
Sbjct: 14  FLDDLWSTKGLSDNTLSAYRTDLRHLDRYLQKQGDDLVTC------SQFDIRNYLAERFD 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     S  R +S ++ F  YL  +K      +  + + K +  LP +L+E+     +D 
Sbjct: 68  KGFAKTSSARMMSSLRRFYGYLIVKKQIDSDPMALIESPKLARKLPDSLSEED----IDR 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +L     +   I++R+ A+L LLY  GLR+SE + LT + +   Q  +RI GKG K R+V
Sbjct: 124 LLAEPEQDDP-IESRDKAMLELLYATGLRVSELVGLTMEQLSLRQGLVRITGKGGKERLV 182

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           PL       I  Y      +L    Q   LF   R + +    F   I+      G+   
Sbjct: 183 PLGELAITEIESYLKFARAELLKGKQSDVLFPSKRAQQMTRQTFWHRIKLYALRAGISTE 242

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V +      +  ++ + HP
Sbjct: 243 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATAR----LASLHSEHHP 298


>gi|116494889|ref|YP_806623.1| integrase [Lactobacillus casei ATCC 334]
 gi|191638400|ref|YP_001987566.1| Tyrosine recombinase xerC [Lactobacillus casei BL23]
 gi|301066449|ref|YP_003788472.1| integrase [Lactobacillus casei str. Zhang]
 gi|122263693|sp|Q039E1|XERC_LACC3 RecName: Full=Tyrosine recombinase xerC
 gi|254799345|sp|B3WEA7|XERC_LACCB RecName: Full=Tyrosine recombinase xerC
 gi|116105039|gb|ABJ70181.1| tyrosine recombinase XerC subunit [Lactobacillus casei ATCC 334]
 gi|190712702|emb|CAQ66708.1| Tyrosine recombinase xerC [Lactobacillus casei BL23]
 gi|300438856|gb|ADK18622.1| Integrase [Lactobacillus casei str. Zhang]
 gi|327382429|gb|AEA53905.1| Site-specific recombinase [Lactobacillus casei LC2W]
 gi|327385628|gb|AEA57102.1| Site-specific recombinase [Lactobacillus casei BD-II]
          Length = 298

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/294 (31%), Positives = 146/294 (49%), Gaps = 14/294 (4%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           LE+ER  S  T+ +Y  D ++F  FL    +        R +   +++ +++    Q + 
Sbjct: 11  LEVERQYSPETVTAYLSDLQEFQAFL----KANGGFTDFRHVDDLDVQTYLTDLNKQDLA 66

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQALTLVDNVLL 143
             S+ R +S ++SF +YL +  +  + N   +  LKK +  LP+   E +   L   V  
Sbjct: 67  RTSIARKISSLRSFYRYLTRIDVV-KRNPFELVELKKQHHHLPQFFYEAEIQELFKTVAG 125

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
            T      +D RN A+L +LYG G+R+SE   LT   +  + + L I GKG+K R VP  
Sbjct: 126 KTP-----LDQRNRALLEVLYGTGIRVSECAKLTLNQVDFNTALLLIHGKGNKDRYVPFG 180

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
              ++A+  Y       L    Q     +F    G+P+     +  + QL +   L  + 
Sbjct: 181 QYAQQALRTYLKDGRQVLMAKSQAQHRYVFVNQYGRPITSRGIEYILDQLIKQTTLTANI 240

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
             H LRHSFATH+L +G DLR++Q +LGH  LSTTQIYT+V   +  +  M+ Y
Sbjct: 241 HPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYY 294


>gi|296125451|ref|YP_003632703.1| integrase family protein [Brachyspira murdochii DSM 12563]
 gi|296017267|gb|ADG70504.1| integrase family protein [Brachyspira murdochii DSM 12563]
          Length = 310

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 164/310 (52%), Gaps = 25/310 (8%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL E  ++LQ L      +  T+ SY  D +++  FL     + I +      S   +R 
Sbjct: 17  LLDEFSDYLQTL----NFAAHTINSYNKDLKEYFNFLE---SKNILLDNADHYS---VRD 66

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++  +++ + + ++ R LS IK F KYL +  ++ ++ I++M++ K+   + + L    
Sbjct: 67  YLTFLKSKSLTNSTMSRHLSSIKKFYKYLIRNGLSDKTRIVDMKSPKREEHIAKFL---- 122

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           +L  +D +L     +  +   R+  +   +Y  GLR+SE  SL    I     TLRI GK
Sbjct: 123 SLDDIDRILA-IDDDGDFTLLRDKMMALFMYAIGLRVSELASLRLSMIKKGDETLRICGK 181

Query: 194 GDKIRIVPLLPSVRK---AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           G K+R +P+LP V +     +E   +   + + N    LF    GKP++    +  +++L
Sbjct: 182 GSKVRDIPVLPVVYENWDIYMEKRRMIQKEYSQNNDY-LFINRFGKPISDRSIRTSMKRL 240

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGDW 309
            R   + +  + HTLRH+FATHLL+N  ++R +Q +LGH  ++TTQ YT+V NS+     
Sbjct: 241 IRNANISMDFSPHTLRHTFATHLLNNDAEIRGVQELLGHETIATTQRYTHVTNSR----- 295

Query: 310 MMEIYDQTHP 319
           + E+Y++ HP
Sbjct: 296 LFEVYNRFHP 305


>gi|91789051|ref|YP_550003.1| tyrosine recombinase XerD subunit [Polaromonas sp. JS666]
 gi|91698276|gb|ABE45105.1| tyrosine recombinase XerD subunit [Polaromonas sp. JS666]
          Length = 300

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 154/301 (51%), Gaps = 14/301 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            ++  L +E GLSK TL +Y  D   F  +LA   ++   +    +   T++  + S R 
Sbjct: 11  GFIDALWLEDGLSKNTLAAYRRDLSLFAAWLAAPAQQGRRLDDTVE---TDLNRYFSTRH 67

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  S  R L+  K + ++  + ++ T    L +++ K++  +P+ ++E Q      
Sbjct: 68  ATTKAT-SANRRLTVFKRYFRWALRERLITVDPTLKLQSAKQALRVPKVMSEAQV----- 121

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL    E+  +  R+ A+L L+Y  GLR+SE + L   ++  ++  LR+ GKG K R+
Sbjct: 122 EALLAAPSESTPLGQRDRAMLELMYASGLRVSELVGLKTFHVGLNEGVLRVMGKGSKERL 181

Query: 200 VPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP     R+ ++ Y  +  P  L       LF   RG  ++  +F   +++  +  G+  
Sbjct: 182 VPFGQVAREWVVLYLAEARPAILGGQQTDDLFVTNRGSGMSRVMFWMLVKKYAQLAGIHS 241

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HTLRH+FATHLL++G DLR++Q +LGH  +STT IYT+V  +     +  ++ Q H
Sbjct: 242 PLSPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVARER----LKALHAQHH 297

Query: 319 P 319
           P
Sbjct: 298 P 298


>gi|307823075|ref|ZP_07653305.1| tyrosine recombinase XerC [Methylobacter tundripaludum SV96]
 gi|307735850|gb|EFO06697.1| tyrosine recombinase XerC [Methylobacter tundripaludum SV96]
          Length = 302

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/306 (31%), Positives = 162/306 (52%), Gaps = 17/306 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++ + L +E   S+ T+++Y+ D    L  L+ Y  +K  I     L +T+IRA I+ R 
Sbjct: 11  DFFKQLTVEVRASEHTVKNYQRD----LKHLSRYCTDK-PITRWADLKHTDIRAHIASRH 65

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +  +SL+R LS I+SF  YL K+  T  +   +++  K++  LP+ L+  Q   L++
Sbjct: 66  RKGLSSKSLQRELSAIRSFYNYLLKKGQTDVNPAQHIQAPKQARKLPKTLDVDQLSGLLE 125

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR 198
                 +  +  ++ R+ A+  L Y  GLR+SE  +L   ++    STL ++ GKG K R
Sbjct: 126 ------AGASSLLEIRDLAMFELFYSSGLRLSELSALDLTDLDLPDSTLTVRIGKGGKSR 179

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++P+      AI  +       +   I+  LF   RG  L     +  + +  +  G+  
Sbjct: 180 VLPVGSKAVTAIENWLQQRAVKIP-AIEPALFVSTRGTRLGQRNIELRLERWCKAKGIAE 238

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRHSFA+HLL +  DLR++Q +LGH  +STTQIYT+++ ++    + EIYD+ H
Sbjct: 239 HIHPHMLRHSFASHLLESSHDLRAVQELLGHSNISTTQIYTHLDFQH----LAEIYDKAH 294

Query: 319 PSITQK 324
           P   +K
Sbjct: 295 PRAKKK 300


>gi|323343537|ref|ZP_08083764.1| integrase/recombinase XerD [Prevotella oralis ATCC 33269]
 gi|323095356|gb|EFZ37930.1| integrase/recombinase XerD [Prevotella oralis ATCC 33269]
          Length = 317

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/289 (31%), Positives = 150/289 (51%), Gaps = 20/289 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++++ L++ER  S  TL++Y+ D    L +L  Y  ++     + +L   ++  F  + 
Sbjct: 15  KSYVRYLKLERNYSPHTLEAYQHD----LSWLIGYCAQQDL--NVFELKLADLERFAVQI 68

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +G  +  R LSG++SF ++L             + +      LP  L+  +   L 
Sbjct: 69  HEHGVGPATQARILSGVRSFYRFLVLDGYIAADPTELLESPHIGEHLPEVLSAAEVDMLE 128

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D++ L     +KW   RN AI+ +L+ CGLR+SE ++L   ++  ++  +R+ GKGDK R
Sbjct: 129 DSIDL-----SKWEGQRNKAIIEMLFSCGLRVSELVNLKLSDLYIEEEYVRVLGKGDKER 183

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRY 253
           +VP+ P   KAI E   L   D NL    P     +F   RG  L   +    I++    
Sbjct: 184 LVPISP---KAIKEL-KLWFIDRNLMQIKPGEIDFVFLNRRGSHLTRTMILIMIKRQAEA 239

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            G+  + + HTLRHSFAT LL  G DLR+IQ +LGH  + TT+IYT+++
Sbjct: 240 AGIRKTISPHTLRHSFATELLKGGADLRAIQEMLGHESIGTTEIYTHID 288


>gi|119026091|ref|YP_909936.1| tyrosine recombinase xerD [Bifidobacterium adolescentis ATCC 15703]
 gi|154488864|ref|ZP_02029713.1| hypothetical protein BIFADO_02172 [Bifidobacterium adolescentis
           L2-32]
 gi|118765675|dbj|BAF39854.1| tyrosine recombinase xerD [Bifidobacterium adolescentis ATCC 15703]
 gi|154083001|gb|EDN82046.1| hypothetical protein BIFADO_02172 [Bifidobacterium adolescentis
           L2-32]
          Length = 317

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 155/315 (49%), Gaps = 27/315 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  +++ERGL+K T+++Y+ D R++  +LA        IQ +  ++  ++  +I+    
Sbjct: 11  FLAYIDVERGLAKATVRAYDSDLRKYNGWLATQG-----IQDLNAVTTQDVERYIAFLDD 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                RS  R L+ I +F ++     + +      ++  K + +LP  L   +  +L+D 
Sbjct: 66  SGESARSKARRLASIHAFHRFALNEHVVSNDVAAQVKAPKGATTLPDVLTVDEVASLLDA 125

Query: 141 VLLHTSHETKWIDA---------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           + +  +       A         R+ A+L  +Y  G R+SEA      ++  + +  R+ 
Sbjct: 126 IPVSQNRPQSEGMADMPDDPAMLRDKALLEFMYATGARVSEACGANLDDVDLESNVARLM 185

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRY 246
           GKG K R+VP+     +AI  Y       L    + P     LF   RGK L+       
Sbjct: 186 GKGSKQRLVPVGSYACEAIARYLKNGRPQLESKAKGPTERRALFLNKRGKRLSRQSVWEI 245

Query: 247 IRQL--RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           IR    R ++  PL    HTLRHSFATHL+  G D+R++Q +LGH  ++TTQIYT+V+ +
Sbjct: 246 IRAAGERAHIDKPLHP--HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPE 303

Query: 305 NGGDWMMEIYDQTHP 319
           N    ++E Y  +HP
Sbjct: 304 N----LIETYLTSHP 314


>gi|163750315|ref|ZP_02157556.1| integrase/recombinase XerD [Shewanella benthica KT99]
 gi|161329987|gb|EDQ00972.1| integrase/recombinase XerD [Shewanella benthica KT99]
          Length = 308

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 154/301 (51%), Gaps = 16/301 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L +L   RGLS  TL +Y  D R F  ++     +K+    + Q+S   IR ++  R 
Sbjct: 21  TFLDDLWSNRGLSDNTLAAYRTDLRHFDRYM-----QKLGGGLV-QVSQQLIRDYLDVRF 74

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +     S  R +S ++ F  +L  +K+     I  +++ K +  LP +L+E        
Sbjct: 75  DKGFARTSSARLMSSLRRFYGFLILKKLIQVDPIARIKSPKLARKLPDSLSEADV----- 129

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           ++LL+     + I+ R+ A+L LLY  GLR++E +SLT + +   Q  +R+ GKG K R+
Sbjct: 130 DILLNEPDLQEPIECRDRAMLELLYATGLRVTELVSLTMEQLSLRQGLVRVVGKGGKERL 189

Query: 200 VPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VPL       +  Y +    +L    +   LF   RG+ +    F   I+      G+  
Sbjct: 190 VPLGEIAVNEVEHYLEGARAELLKGKLSDVLFPSRRGQMMTRQTFWHRIKLYALRAGIVT 249

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HT+RH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + +++ + H
Sbjct: 250 HISPHTMRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKAR----LSQLHSEHH 305

Query: 319 P 319
           P
Sbjct: 306 P 306


>gi|71906177|ref|YP_283764.1| tyrosine recombinase XerD subunit [Dechloromonas aromatica RCB]
 gi|71845798|gb|AAZ45294.1| tyrosine recombinase XerD subunit [Dechloromonas aromatica RCB]
          Length = 302

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/296 (33%), Positives = 145/296 (48%), Gaps = 13/296 (4%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           +I S   L E  N+   L +E GL+K TL SY  D  +  ++LA    E +       L 
Sbjct: 2   KIASQADLSEIDNFCDALWLEDGLAKATLDSYRSDLSRLALWLANNASEPLL-----DLH 56

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
            T + AFI+    Q     S  R LS ++ F ++   R        L + N  + + LP+
Sbjct: 57  ETTLTAFIAHLAKQTRAT-SQARYLSTLRRFYRWQLGRGRIVADPTLKLANPSRPSRLPK 115

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            ++EKQ   L+D   L T      +  R+ A+L  +Y  GLR+SE ++L    +      
Sbjct: 116 VMSEKQVEALLDAPDLDTP-----LGLRDRAMLETIYATGLRVSELVNLRLHEVSLADGV 170

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           LR  GKG K R+VPL     + I  Y +   P  LN      LF   RG  +    F + 
Sbjct: 171 LRALGKGSKERLVPLGQLAIEWIKRYLNEARPDILNGQHSDDLFITARGGGMTRQAFWQL 230

Query: 247 IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           I++     G+ P   + H LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 231 IKRYALIAGIAPDKLSPHVLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHV 286


>gi|251791941|ref|YP_003006661.1| site-specific tyrosine recombinase XerD [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533328|gb|ACS96574.1| tyrosine recombinase XerD [Aggregatibacter aphrophilus NJ8700]
          Length = 297

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/296 (31%), Positives = 151/296 (51%), Gaps = 19/296 (6%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           IE+GLS  T+QSY  D      +L  +    +T+  +      +++ F+ +R  Q     
Sbjct: 16  IEKGLSPNTVQSYRLDLTALCDWLEVHKLSLLTLDAV------DLQTFLGERLQQGYKAT 69

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R LS ++   +YL K K  T+     + + K  + LP+ L E+Q   L++   L   
Sbjct: 70  STARLLSAMRKLFQYLYKEKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDLLNVQSLEQP 129

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                ++ R+ A+L LLY  GLR++E ++L   +I  +Q  +R+ GKG+K RIVP+    
Sbjct: 130 -----VELRDKAMLELLYATGLRVTELVTLGTDSINLNQGVVRVIGKGNKERIVPMGEEA 184

Query: 207 RKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ--LRRYLGLPLSTTAH 263
              I +Y     P  L+      LF   RG  +    F   I+   +R  +   +  + H
Sbjct: 185 THWIKQYILFVRPILLDGQSSDVLFPSRRGTQMTRQTFWHRIKHYAVRAEIDSDM-LSPH 243

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++++ HP
Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER----LKRLHERYHP 295


>gi|241667835|ref|ZP_04755413.1| site-specific recombinase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876378|ref|ZP_05249088.1| site-specific recombinase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842399|gb|EET20813.1| site-specific recombinase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 292

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/301 (32%), Positives = 148/301 (49%), Gaps = 20/301 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L NL +E GLS+ T+ SY  D    L FL  Y  +   I     L + ++ AFIS R  
Sbjct: 8   FLDNLWLEHGLSQNTISSYRTD----LKFLQSYFSQVELIN----LDFEQLYAFISYRSK 59

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD- 139
                RS  R +S ++ F  +L      T +    +   K +  LP+ + E      VD 
Sbjct: 60  NGYSSRSNARMISTLRKFYNWLISTGQATTNPTTKLTLPKLAKRLPKDMTE------VDV 113

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL     T  I  R+ A+L L+Y  GLR+SE + L   +I  +   +++ GKG K RI
Sbjct: 114 ERLLQAPDLTDDIGIRDKAMLELMYATGLRVSELVGLNTNDIDLNVGVIQVMGKGSKERI 173

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+     + + +Y++     L  N  +  +F     K +    F   I+      G+  
Sbjct: 174 VPIGEYALEYLHKYFEESRESLAKNFKEKAVFISKHSKRITRQSFWHRIKSYALIAGINT 233

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HTLRH+FATHLL++G DLRS+Q +LGH  +STT IYT+++       + EIY + H
Sbjct: 234 DISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR----LQEIYQKHH 289

Query: 319 P 319
           P
Sbjct: 290 P 290


>gi|90580583|ref|ZP_01236388.1| tyrosine recombinase [Vibrio angustum S14]
 gi|90438241|gb|EAS63427.1| tyrosine recombinase [Photobacterium angustum S14]
          Length = 298

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 151/303 (49%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + +ERGLS+ TL SY  D  + L +L   +   I++      S  +++ +    
Sbjct: 9   ERFLDAMWMERGLSENTLSSYRNDLTKLLRWLKQESRNVISV------SVDDLQRYQQWL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S  R +S I+   +YL + K+  +     +   K    LP+ L+E Q     
Sbjct: 63  FDKDYKQTSRARMVSAIRRLFQYLHREKMRDDDPSAMLVTPKLPKRLPKDLSEAQV---- 118

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            + LL        I+ R+ A+L LLY  GLR++E ++LT +NI   Q  +RI GKGDK R
Sbjct: 119 -DALLEAPDVNDPIELRDKAMLELLYATGLRVTELVTLTMENISLRQGVVRITGKGDKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+  +    I ++ +   P  L       LF   R + +    F   I+      G+ 
Sbjct: 178 LVPMGENAVDWIEQFIETGRPQLLGEKSSDVLFPSRRARQMTRQTFWHRIKHYAVLAGID 237

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             T + H +RH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +++  
Sbjct: 238 ADTLSPHVMRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQT 293

Query: 317 THP 319
            HP
Sbjct: 294 HHP 296


>gi|271499210|ref|YP_003332235.1| tyrosine recombinase XerD [Dickeya dadantii Ech586]
 gi|270342765|gb|ACZ75530.1| tyrosine recombinase XerD [Dickeya dadantii Ech586]
          Length = 299

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 151/303 (49%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER L++ TL SY  D      +LA +    +  Q       ++++ F+++R
Sbjct: 10  EQFLDALWLERNLAENTLSSYRNDLSSLAEWLAHHDRHLLEAQP------SDLQDFLAER 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K  T+     + + K    LP+ L E Q     
Sbjct: 64  LEGGYKATSSARLLSAMRRLFQYLYREKRRTDDPSAPLSSPKLPQRLPKDLTEAQV---- 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL      + I+ R+ A+L LLY  GLR+SE + LT  ++   Q  +R+ GKG+K R
Sbjct: 120 -EALLAAPVTDQPIELRDKAMLELLYATGLRVSELVGLTMSDVSLRQGVVRVVGKGNKER 178

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       + +Y +   P+ LN      LF   R + +    F   I+       + 
Sbjct: 179 LVPLGEEAVYWLEQYLEYSRPWLLNGQTLDVLFPSNRAQQMTRQTFWHRIKHYATLASID 238

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            +  + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q
Sbjct: 239 SNKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQQ 294

Query: 317 THP 319
            HP
Sbjct: 295 HHP 297


>gi|315633750|ref|ZP_07889040.1| tyrosine recombinase XerD [Aggregatibacter segnis ATCC 33393]
 gi|315477792|gb|EFU68534.1| tyrosine recombinase XerD [Aggregatibacter segnis ATCC 33393]
          Length = 297

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/301 (31%), Positives = 153/301 (50%), Gaps = 17/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L I +GLS  T+QSY  D      +L+   E K+++     L   +++ F+ +R  
Sbjct: 10  FLNELWIGKGLSPNTVQSYRLDLTALCDWLS---ERKLSL---LDLDSVDLQTFLGERVE 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     S  R LS I+   +YL + K  T+     + + K  + LP+ L E+Q   L++ 
Sbjct: 64  QGYKATSTARLLSAIRKLFQYLYQEKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDLLNV 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L        I+ R+ A+L LLY  GLR++E +SL   +I  +Q  +R+ GKG+K RIV
Sbjct: 124 QSLEQP-----IELRDKAMLELLYATGLRVTELVSLHTDSISLNQGVVRVIGKGNKERIV 178

Query: 201 PLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+       + ++     P  LN      LF   RG  +    F   I+       +  +
Sbjct: 179 PMGEEATHWVKQFMLFARPILLNGQSSDVLFPSRRGTQMTRQTFWHRIKHYAVLAEIDSN 238

Query: 260 T-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++++ H
Sbjct: 239 MLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER----LKRLHERYH 294

Query: 319 P 319
           P
Sbjct: 295 P 295


>gi|251790996|ref|YP_003005717.1| tyrosine recombinase XerD [Dickeya zeae Ech1591]
 gi|247539617|gb|ACT08238.1| tyrosine recombinase XerD [Dickeya zeae Ech1591]
          Length = 299

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 151/303 (49%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER L++ TL SY  D      +LA +  + +  Q +      +++ F+++R
Sbjct: 10  EQFLDALWLERNLAENTLSSYRNDLCSLAEWLAHHNSDLLQAQPL------DLQGFLAER 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K   +     + + K    LP+ L E Q     
Sbjct: 64  LEGGYKATSSARLLSAMRRLFQYLYREKRRADDPSAPLSSPKLPQRLPKDLTEAQV---- 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL      + I+ R+ A+L LLY  GLR+SE + LT  ++   Q  +R+ GKG+K R
Sbjct: 120 -EALLAAPVTDQPIELRDKAMLELLYATGLRVSELVGLTISDVSLRQGVVRVVGKGNKER 178

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       + +Y +   P+ LN      LF   R + +    F   I+       + 
Sbjct: 179 LVPLGEEAVYWLEQYLEFSRPWLLNGQTLDVLFPSNRAQQMTRQTFWHRIKHYATLASID 238

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            +  + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q
Sbjct: 239 SNKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQQ 294

Query: 317 THP 319
            HP
Sbjct: 295 HHP 297


>gi|307129430|ref|YP_003881446.1| site-specific tyrosine recombinase [Dickeya dadantii 3937]
 gi|306526959|gb|ADM96889.1| site-specific tyrosine recombinase [Dickeya dadantii 3937]
          Length = 299

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 151/303 (49%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER L++ TL SY  D R    +LA +    +  Q       ++++ F+++R
Sbjct: 10  EQFLDALWLERNLAENTLSSYRNDLRSLADWLAHHDSSLLQAQP------SDLQDFLAER 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K   +     + + K    LP+ L E Q     
Sbjct: 64  LEGGYKATSSARLLSAMRRLFQYLYREKQRPDDPSAPLSSPKLPQRLPKDLTEAQV---- 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL      + I+ R+ A+L LLY  GLR+SE + LT  ++   Q  +R+ GKG+K R
Sbjct: 120 -EALLAAPVTDQPIELRDKAMLELLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKER 178

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       + +Y +   P+ LN      LF   R + +    F   I+       + 
Sbjct: 179 LVPLGEEAVYWLEQYLEYSRPWLLNGQTLDVLFPSNRAQQMTRQTFWHRIKHYATLASID 238

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            +  + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q
Sbjct: 239 SNKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQ 294

Query: 317 THP 319
            HP
Sbjct: 295 HHP 297


>gi|150397765|ref|YP_001328232.1| site-specific tyrosine recombinase XerD [Sinorhizobium medicae
           WSM419]
 gi|150029280|gb|ABR61397.1| tyrosine recombinase XerD [Sinorhizobium medicae WSM419]
          Length = 313

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 157/316 (49%), Gaps = 18/316 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ +  ERG +  TLQSYE D R    FL      +     +   S  ++R+++S  
Sbjct: 10  EAFLEMMSAERGAAVNTLQSYERDLRDARSFL------RSRGVGLVDASADDLRSYLSHL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S  R LS ++ F K+L    + T+     +   KK+ +LP+ L+ +    L+
Sbjct: 64  TGEGFKSSSQARRLSALRQFYKFLYAEGLRTDEPTGILDAPKKNRALPKTLSIEDVTRLI 123

Query: 139 DNVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
                 T  E    DA    R  A++ LLY  G+R+SE +SL    +  D   L I+GKG
Sbjct: 124 GQA--ETEAEKGGEDAVAKLRMHALIELLYATGMRVSELVSLPASVLAQDGRFLIIRGKG 181

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL  +  +A+  Y      + +      LF    R   L   VF R ++ L   
Sbjct: 182 NKERLVPLSQTAIRAMRAYGQALHREADGADSPWLFPSYGRNGYLPRQVFARDLKSLAAR 241

Query: 254 LGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+ ++  + H LRH+FA+HLL+NG DLR++Q +LGH  +STTQIYT+V  +     + +
Sbjct: 242 AGIRVAAISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEER----LHD 297

Query: 313 IYDQTHPSITQKDKKN 328
           +    HP   Q  K++
Sbjct: 298 LVQSHHPLAKQAKKQD 313


>gi|84502972|ref|ZP_01001074.1| tyrosine recombinase XerD [Oceanicola batsensis HTCC2597]
 gi|84388717|gb|EAQ01588.1| tyrosine recombinase XerD [Oceanicola batsensis HTCC2597]
          Length = 315

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/312 (30%), Positives = 156/312 (50%), Gaps = 29/312 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L+    E G S+ TL +Y  D + F  +L      +     I   +  ++ A+++   
Sbjct: 12  SFLEAQAAEAGASRNTLLAYGRDLKDFAGWL------ERQHHAIDSATRADVEAYLTDCD 65

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q +   +  R LS I+   ++  +    +++  + +R   +S  LPR L   +   L+D
Sbjct: 66  AQGLSQATRARRLSAIRQLFRFAFEEGWRSDNPAIEIRGPGRSRKLPRTLTTDEVGALLD 125

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                  +E+  +  RN+ ++ LLY  G+R++E +SL       D   L I+GKG K R+
Sbjct: 126 AARTKGRNESDRL--RNTCLMELLYATGMRVTELVSLPLAAARGDPRMLLIRGKGGKERM 183

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNP-----GVFQRY-----IR 248
           VPL P  R+A+  +  L   +   +  LP  RG R  + L P     G   R+     I+
Sbjct: 184 VPLSPPAREALAAW--LAAREAR-DEALP--RGARPSRALFPSRSAEGHLTRHRFYILIK 238

Query: 249 QLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++    G+ P   T HTLRH+FATHLL NG DLR+IQ++LGH  L+TT+IYT+V      
Sbjct: 239 EIALAAGVSPAKVTPHTLRHAFATHLLENGADLRAIQTLLGHADLATTEIYTHVLEHR-- 296

Query: 308 DWMMEIYDQTHP 319
             + E+ +  HP
Sbjct: 297 --LRELVETHHP 306


>gi|73662825|ref|YP_301606.1| integrase recombinase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|82582337|sp|Q49X37|XERC_STAS1 RecName: Full=Tyrosine recombinase xerC
 gi|72495340|dbj|BAE18661.1| putative integrase recombinase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 296

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 160/308 (51%), Gaps = 24/308 (7%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K +Q +L  L++E+  S+ TL+SY  D  QF +FLA   +E + +       Y + R ++
Sbjct: 3   KIQQAYLYMLKVEKQFSEHTLKSYHDDLEQFNVFLA---QEHLDLNA---FEYKDARNYL 56

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           S   ++ +   S+ R +S ++SF +Y   +     +  + + + KK + LP    E++  
Sbjct: 57  SYLYSKNLKRTSVSRKISTLRSFYEYWMTQDEAVVNPFIQLVHPKKEHYLPHFFYEEEME 116

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L D V    +   K +  R+  IL LLY  G+R+SE + +  Q+I      +++ GKG 
Sbjct: 117 ALFDTV---ENDAKKGL--RDRVILELLYSTGIRVSELVHIKEQDIDMTSPGVKVLGKGG 171

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNP-GVFQRYIRQ--LR 251
           K R +P     ++++  Y  L  F   LN     L   ++G P+   GV  RY+    ++
Sbjct: 172 KERFIPFGEFCKQSMERY--LASFKPKLNSNHDYLLVNMKGDPITERGV--RYVLNDVVK 227

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R  G+      H LRH+FATH+L+ G DLR++QS+LGH  LSTT  YT+V +    + + 
Sbjct: 228 RTAGVT-EIHPHKLRHTFATHMLNQGADLRTVQSLLGHVNLSTTGRYTHVTN----EQLR 282

Query: 312 EIYDQTHP 319
           ++Y   HP
Sbjct: 283 KVYLNAHP 290


>gi|84393959|ref|ZP_00992699.1| tyrosine recombinase [Vibrio splendidus 12B01]
 gi|84375403|gb|EAP92310.1| tyrosine recombinase [Vibrio splendidus 12B01]
          Length = 304

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/305 (32%), Positives = 154/305 (50%), Gaps = 21/305 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF--YTEEKITIQTIRQLSYTEIRAFIS 76
           + +L  + +ERGLS+ TL SY  D  + L ++    Y  + I++  ++   Y    A   
Sbjct: 15  EQFLDAMWMERGLSENTLVSYRTDLSKLLTWMEKNNYRLDFISLSGLQ--DYQGWLADAD 72

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            ++T +       R LS I+   +YL + K+  +     + + K    LP+ L+E+Q   
Sbjct: 73  FKQTSR------ARMLSAIRRLFQYLHREKVRGDDPSALLISPKLPQRLPKDLSEEQV-- 124

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
              N LL        I+ R+ A+L LLY  GLR++E +SLT +NI   Q  +R+ GKG K
Sbjct: 125 ---NALLEAPDPNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGK 181

Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R+VP+  +    I  + +   P  L  N    +F   R K +    F   I+      G
Sbjct: 182 ERLVPMGENAVDWIETFIEQGRPQLLGENSSDVVFPSKRAKQMTRQTFWYRIKHYSVVAG 241

Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           +     + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +I+
Sbjct: 242 IDTELLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIH 297

Query: 315 DQTHP 319
            Q HP
Sbjct: 298 AQHHP 302


>gi|325106888|ref|YP_004267956.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM
           5305]
 gi|324967156|gb|ADY57934.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM
           5305]
          Length = 315

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/297 (30%), Positives = 153/297 (51%), Gaps = 17/297 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  E G+++ ++++Y  D  QFL +L     +K     +R+L+  ++ A++     + + 
Sbjct: 32  LRAECGMAENSVKAYIRDLEQFLDWL-----KKKHWHDVRELTLQQLTAYLKHLHDEGLK 86

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             ++ R L  +K+F ++L    + T+S    + + K    LP+ L+ ++    VD +L  
Sbjct: 87  ASTVARKLVALKTFFRFLVLEGVITDSKAELLNSPKLWQYLPKVLSPEK----VDALLTA 142

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            S E ++   R+ AIL +LY  G R SE   LT   +  D+   + +GKG+K RIV L P
Sbjct: 143 PSWEDEFPH-RDRAILSVLYATGCRASEVTDLTLDQVRLDEGYCKCRGKGNKERIVSLNP 201

Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            V  A LE Y     P     + Q  LF    G+PL+     R +++    +G     + 
Sbjct: 202 -VAIAALETYLQRERPALAARHEQTHLFLSRTGRPLDRLTIWRIVKRYAARIGCSAQVSP 260

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HTLRHSFATH+L+ G ++R++Q +LGH  + TTQ+YT+V        +  I+   HP
Sbjct: 261 HTLRHSFATHMLAGGAEIRALQEMLGHANIRTTQVYTHVEHSR----LKSIHRDCHP 313


>gi|326315550|ref|YP_004233222.1| integrase family protein [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323372386|gb|ADX44655.1| integrase family protein [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 326

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 155/318 (48%), Gaps = 26/318 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+++ +E+ L++ T+  Y  D    L  LA    +      + QL    IR F+++   
Sbjct: 18  YLEHVRVEKRLAQRTVTLYTLD----LAKLAASARDAGV--PLLQLQTAHIRRFVAQMHA 71

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
              G R +   LSG + F  +  ++ +   + +  +R  +    LP+AL    A+ L + 
Sbjct: 72  GGRGGRGIALILSGWRGFFTWAARQGLVPHNPVQGVRAPRAPKPLPKALGVDDAVRLAE- 130

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR----------- 189
               +S    W++AR++A++ LLYGCGLR+ E   L      D Q   R           
Sbjct: 131 -FEGSSGSDPWLEARDAAMVELLYGCGLRVGELAGLDAVPGPDTQRQGRGWIDLQAAEAH 189

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYD--LCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRY 246
           + GKG K R VP+  +   A+  + +  L PF   +      LF G RG  L        
Sbjct: 190 VFGKGSKRRSVPVGSAALAALRAWLEVRLQPFGAASGRADAALFLGRRGARLTGQSIWSR 249

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +RQ  +  GL      H LRHSFA+HLL + GDLR++Q +LGH  ++TTQ+YT ++ ++ 
Sbjct: 250 LRQRSQLAGLSTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTRLDFQH- 308

Query: 307 GDWMMEIYDQTHPSITQK 324
              + ++YD +HP   +K
Sbjct: 309 ---LAKVYDASHPRARRK 323


>gi|28378506|ref|NP_785398.1| integrase/recombinase [Lactobacillus plantarum WCFS1]
 gi|254556720|ref|YP_003063137.1| integrase/recombinase [Lactobacillus plantarum JDM1]
 gi|300767452|ref|ZP_07077364.1| tyrosine recombinase XerC [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308180663|ref|YP_003924791.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28271342|emb|CAD64247.1| integrase/recombinase [Lactobacillus plantarum WCFS1]
 gi|254045647|gb|ACT62440.1| integrase/recombinase [Lactobacillus plantarum JDM1]
 gi|300495271|gb|EFK30427.1| tyrosine recombinase XerC [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308046154|gb|ADN98697.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 314

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 150/310 (48%), Gaps = 15/310 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ + +ER  S+ T  +Y  D + F  FL      K   +  R     ++  ++S    
Sbjct: 9   FLKYIRVERQYSEETAAAYREDIQAFNDFLTANGGAKAYTEVDR----LDVNVYLSHLYD 64

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   S+ R +S ++SF  +L K  +   +  + ++  K +  LPR   +K+   L   
Sbjct: 65  RHLTRNSIARKVSSLRSFYNFLVKNDLAKLNPFVYVQLKKHAARLPRFFYQKELDVLFQT 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           V    S     + ARN+A+L +LYG G+R+SE + L   ++  D   + I+GKGDK R V
Sbjct: 125 VYADDS----VMGARNAALLEVLYGTGIRLSECVDLQLADVDYDLKMMLIRGKGDKERYV 180

Query: 201 PLLPSVRKAILEYYDLC--PFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           P       A+  Y  +C  P           +F    G P+  G  +  + Q+ +   L 
Sbjct: 181 PFGRYAATALQHYETVCRQPVMAKYGQTHQTVFINRHGGPITGGGIEYVLNQIVKKSSLT 240

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRH+FAT +L+NG DLR++Q +LGH  LSTTQIY +V  ++    + + Y Q 
Sbjct: 241 ADIHPHMLRHTFATQMLNNGADLRTVQELLGHTSLSTTQIYAHVTKEH----LQQDYRQF 296

Query: 318 HPSITQKDKK 327
            P  T++  K
Sbjct: 297 FPRATRESTK 306


>gi|327441062|dbj|BAK17427.1| site-specific recombinase XerD [Solibacillus silvestris StLB046]
          Length = 299

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 151/300 (50%), Gaps = 15/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +++ +++E+  S  T++ Y  D  +F  FL         IQ I ++ Y   R +++K   
Sbjct: 12  FIRYVQLEKNFSLHTVREYTSDLEEFFAFL-----HAEGIQKIAEVEYIHARLYVTKLYD 66

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           ++    S+ R +S I+SF ++L + +   ++   ++ + KK   LP    E++   L + 
Sbjct: 67  EQKARTSISRKISSIRSFFRFLNREQNIDDAPFRSLYHPKKEERLPSFFYEEELKELFE- 125

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                +     I  RN A+L LLY  G+R+SE +SL   +I    + +R+ GKG K RI+
Sbjct: 126 ----KNEGDDPIQIRNMALLELLYATGMRVSECVSLELTDIDFHYNIVRVMGKGRKERII 181

Query: 201 PLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P       A++ Y   + P  +       +F  +RG  L     +  + ++     +   
Sbjct: 182 PFGQYAHDALIRYIKQVRPTLMKKENHQKVFVNMRGGELTTRGVRYILSEMIDNASMHTK 241

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRH+FATHLL+NG D+R++Q +LGH  LS+TQIYT+V      + + + Y  +HP
Sbjct: 242 IYPHMLRHTFATHLLNNGADMRTVQELLGHANLSSTQIYTHVTK----EALRKTYMNSHP 297


>gi|301063083|ref|ZP_07203644.1| tyrosine recombinase XerD [delta proteobacterium NaphS2]
 gi|300442803|gb|EFK07007.1| tyrosine recombinase XerD [delta proteobacterium NaphS2]
          Length = 293

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 156/309 (50%), Gaps = 20/309 (6%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           ++L+ E   ++  L +ERGL++ T+ +Y   +R  + F+A+     IT       S T I
Sbjct: 2   YDLIDE---FITYLRVERGLAENTVHAY---SRDLIRFVAYLENRNITPV---DCSRTAI 52

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           R ++    T ++  RS  R++S IK+F ++L       E+    +   +    LP  L+ 
Sbjct: 53  RDYLGTL-THELSKRSRARNVSAIKTFYRFLVSEGKMEENPARLVETPRIQQKLPDILSV 111

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            +    V+ +LL     T  I  R+ A+L LLY  GLR+SE + L   ++  +   ++  
Sbjct: 112 DE----VERLLLQPDGATP-IGQRDRAMLELLYATGLRVSELVRLRLLDVNMEAGFVKAL 166

Query: 192 GKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           GKG K R+VP     R+A+  Y  D  P  L       LF   RGKPL    F + I+  
Sbjct: 167 GKGSKERMVPFGEKARQALKTYLSDGRPALLKEGHPPYLFLNFRGKPLTRQGFWKIIKNH 226

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+  +   H LRHSFA+HLL  G DLRS+Q +LGH  ++TTQIYT+V  +     +
Sbjct: 227 GIMAGIKKNIKPHGLRHSFASHLLEAGADLRSVQLMLGHADITTTQIYTHVTRER----L 282

Query: 311 MEIYDQTHP 319
            E++   HP
Sbjct: 283 KELHGTCHP 291


>gi|258593730|emb|CBE70071.1| Tyrosine recombinase xerD [NC10 bacterium 'Dutch sediment']
          Length = 295

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 155/302 (51%), Gaps = 15/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L+ L +E+GL++ +L +Y  D R+ + +      ++  + + R++S  ++   +   
Sbjct: 6   EDYLRYLAVEKGLAENSLAAYGRDLRRIVGYF-----KQGGVGSFREVSRGQVARLLLTL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R   +  R++ R  S ++   +YL  +    E    ++ +      LP  L++++   L+
Sbjct: 61  REAGLAPRTVSRHTSSLRGLYRYLLTQDHVKEDPTAHLESSSPWVRLPGVLSQEEVERLL 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L  TS+    +  R+ A+L LLY  GLR+SE ++L    +  +   +  QGKG K R
Sbjct: 121 AAPL--TSNP---LGLRDKAMLELLYAAGLRVSEMVTLRLSEVDLEVGYVHCQGKGGKDR 175

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL    + A+  Y +   P+         LF    G PL    F + +R      G+ 
Sbjct: 176 VVPLGRDAQTAVRRYLETSRPYLQRGWSSSTLFLNRFGYPLTRQGFWKLLRAYAIAAGID 235

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T HTLRHSFATHLL  G DLR++Q +LGH  +STTQIYT+V+  +    +  +Y++ 
Sbjct: 236 RRVTPHTLRHSFATHLLERGADLRAVQMMLGHADISTTQIYTHVSRAH----LKTVYNRY 291

Query: 318 HP 319
           HP
Sbjct: 292 HP 293


>gi|78357014|ref|YP_388463.1| tyrosine recombinase XerD subunit [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219419|gb|ABB38768.1| tyrosine recombinase XerD subunit [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 309

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/304 (32%), Positives = 155/304 (50%), Gaps = 24/304 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE--EKITIQTIRQLSYTEIRAFISK 77
           ++LQ+L I RGLS+ TL SY  D + FL FL       E +T Q++          +I  
Sbjct: 20  SFLQHLLISRGLSENTLSSYGTDLQSFLDFLHHKKSRLEDVTDQSLL--------LYIMH 71

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R + +  +SL R L+ ++   +Y  ++ + +E+    + N K   SLP  L++++    
Sbjct: 72  LRRRGLSSKSLARQLAALRGLFRYGTEQNLLSENPCRFLENPKIPKSLPEYLSQQE---- 127

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +  VL     + K +  R+  +L LLY  GLR+SE ++L P +       +R+ GKG K 
Sbjct: 128 IAEVLAQPDLKEK-LGFRDRTMLELLYAAGLRVSELITLKPLDFDPLTGLVRVFGKGAKE 186

Query: 198 RIVPLLPSVRKAILEYY-DLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R VP+  +  + +  Y  D  P F    NI   LF    GK L      + +R+     G
Sbjct: 187 RTVPVHATAARFLGAYLRDWRPAFKPVENI---LFLNRSGKGLTRQAVWKIVRRHVADAG 243

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + HT RHSFATHLL  G DLR++Q +LGH  ++ T+IYT+V ++     +  I+ 
Sbjct: 244 IHRQISPHTFRHSFATHLLEGGADLRTVQLLLGHADIAATEIYTHVETER----LRRIHK 299

Query: 316 QTHP 319
           Q HP
Sbjct: 300 QFHP 303


>gi|317485554|ref|ZP_07944431.1| tyrosine recombinase XerD [Bilophila wadsworthia 3_1_6]
 gi|316923234|gb|EFV44443.1| tyrosine recombinase XerD [Bilophila wadsworthia 3_1_6]
          Length = 336

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/312 (32%), Positives = 153/312 (49%), Gaps = 42/312 (13%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL  L  ERGLS+ T+ +Y    RQ L  L  + +E  T   +  L    I  FI+  R 
Sbjct: 34  WLDGLIAERGLSRNTVAAY----RQDLDALQDFLDELET--PLSGLDDENITLFIAWLRK 87

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +    R+L R +S ++SFL +  +R     +    +   K  + LP  L + + + L   
Sbjct: 88  RGDATRTLARRISSLRSFLAWCVERGELASNPAALIDTPKLPSLLPDVLTQDEIVRL--- 144

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L+    T  +  R+ A+L LLY  G+R+SE + L P ++   +  +RI GKG K R+V
Sbjct: 145 --LNAPDATSKLGLRDRAMLELLYAAGMRVSELIELQPIDLDLQRGVVRIFGKGSKERLV 202

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------QRYIRQL 250
           PL  +    + EY         L I  PLF      P+   VF          Q   + +
Sbjct: 203 PLHDAAVMRMAEY---------LKIVRPLF-----TPVEDRVFLNRSGNGLSRQGVWKLV 248

Query: 251 RRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +RY    G+    + HT RHSFATHLL  G DLRS+Q +LGH  +S T++YT+V S+   
Sbjct: 249 KRYALEAGIRKPISPHTFRHSFATHLLEGGADLRSVQILLGHADMSATELYTHVQSER-- 306

Query: 308 DWMMEIYDQTHP 319
             +++I+ + HP
Sbjct: 307 --LLQIHRKYHP 316


>gi|298370045|ref|ZP_06981361.1| tyrosine recombinase XerC [Neisseria sp. oral taxon 014 str. F0314]
 gi|298281505|gb|EFI22994.1| tyrosine recombinase XerC [Neisseria sp. oral taxon 014 str. F0314]
          Length = 300

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 144/297 (48%), Gaps = 17/297 (5%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           + G S  T+++Y  D  Q    L     E      +R+  +    A + K   + + +RS
Sbjct: 19  QEGKSAHTVEAYRRDLSQLERLLMLRPSENGA--DVRRGDFL---AALKKLSQRNLSERS 73

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           + R LS  + +  +L +R +       N++  K    LP+A+ ++       N LL+   
Sbjct: 74  MARKLSVWRQYCGWLVQRGLMAADPTANLKAPKPPQRLPKAVQQEPL-----NHLLNQGC 128

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
               +  R+ A+  LLYG GLR+SE   L   +++ D+  + + GKG K R VPL   VR
Sbjct: 129 GEDALALRDRAVFELLYGSGLRLSEVCGLNLHDVLPDEGWVGVTGKGGKQRRVPL---VR 185

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           K+I    D  P  +    +  LF    G+ L     Q+ ++Q     G     + H LRH
Sbjct: 186 KSIDALLDYLPHRVAAEGEAALFTNKNGRRLGQRQIQKRLQQWAAEQGSAQHLSPHMLRH 245

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           S+A+HLL    D+R++Q +LGH  LSTTQIYT ++ ++    +  +YD+ HP   +K
Sbjct: 246 SYASHLLQASRDIRAVQELLGHSNLSTTQIYTKLDLEH----LAAVYDEAHPRAKRK 298


>gi|315500433|ref|YP_004089236.1| integrase family protein [Asticcacaulis excentricus CB 48]
 gi|315418445|gb|ADU15085.1| integrase family protein [Asticcacaulis excentricus CB 48]
          Length = 304

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 145/308 (47%), Gaps = 28/308 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + + L +ER  S  T ++Y  D       L       I    +  L+  +I  F +    
Sbjct: 9   FFEMLSVERNASPRTREAYGHD------LLDLRNHAGIDADGLLTLNEGDIAGFFAALDA 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   +L+R  + ++ F ++  +  ++       +   KK   LP+ L+ ++   L+  
Sbjct: 63  RGLASSTLQRKRAAVRQFYRFCVREGLSDNDPSRKIAAAKKGRPLPKILSRQEVDALIAA 122

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                +H+      R   ++ + Y  G+R+SE ++L    +  D + L ++GKG   R+V
Sbjct: 123 ADAKDAHQAT----RLQCLIEIAYASGMRVSEIVALRLDAVQKDPAYLIVKGKGGTERLV 178

Query: 201 PLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           PL PS R AI +Y D+ P  LN     N  L   RG  G      + +R + QL     L
Sbjct: 179 PLNPSARAAIKDYLDIRPLFLNAKDKANPYLFCSRGAEGH-----LTRRRVGQLLDEAAL 233

Query: 257 -----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
                P   + H LRH+FATHLL  G DLR +Q++LGH  +STTQ+YT+V ++     + 
Sbjct: 234 EAGIDPARVSPHVLRHAFATHLLEGGADLRVVQTLLGHADISTTQVYTHVATER----LK 289

Query: 312 EIYDQTHP 319
           E+ +  HP
Sbjct: 290 EVVETHHP 297


>gi|293400524|ref|ZP_06644669.1| integrase/recombinase XerC [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305550|gb|EFE46794.1| integrase/recombinase XerC [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 305

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 150/302 (49%), Gaps = 14/302 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-- 78
           +L  L+     S  T  +Y+ D  +FL FL   +E  +++  + ++      + + +R  
Sbjct: 8   FLDYLDTVNSGSAHTKDAYQRDITEFLDFLK--SENIMSLDDVDRIIVMNYVSHLRERDG 65

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R   + + ++ R LS ++S+ +YL +      +  L  +  K++  +P  L   +    +
Sbjct: 66  RQGTMKNATVARKLSSLRSYYRYLNEYVGVQNNPFLYFKAPKQTRRIPEFLFYDEIALFL 125

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            +  LH +     +D R+ A+  L+Y  GLR+SEA++L   +I    + L I GKGDK R
Sbjct: 126 ASFDLHEA-----VDVRDRALFELMYASGLRVSEAVNLRLSDIDFHDNILHIIGKGDKQR 180

Query: 199 IVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP     ++ +++Y + + P  +N      +F   +GKPL     Q  +    +   L 
Sbjct: 181 LVPFYDLAKERLVDYIEHVRPKWVNTLQHEYVFVNQKGKPLTSRGVQYRMELAAKKCHLH 240

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           L    H  RHSFATHLL NG DLR +Q +LGH  LSTTQIY +V      D +   Y+  
Sbjct: 241 LHIHPHMFRHSFATHLLDNGADLRVVQELLGHASLSTTQIYVHVTQ----DRLKSAYEHA 296

Query: 318 HP 319
           HP
Sbjct: 297 HP 298


>gi|189219127|ref|YP_001939768.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4]
 gi|189185985|gb|ACD83170.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4]
          Length = 315

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/310 (32%), Positives = 165/310 (53%), Gaps = 25/310 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQ-SYECDT----RQFL-IFLAFYTEEKITIQTIRQLSYTEIR 72
           Q+W +   IE+ L+ L ++ S+  +T    RQ L  FL +    K++I ++R    + I 
Sbjct: 8   QSWQKT--IEKALAFLAIERSHAINTQLLYRQILEKFLDWVLSHKLSIGSVRS---SHIE 62

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKSNS-LPRALN 130
            F+ + R + + D S+K ++  ++   +YLK++ KI T  N L+ + L    S LP+ L 
Sbjct: 63  LFLDEERKRGLSDSSIKITIIALRHLFEYLKEQNKIKT--NPLDHKELPSIQSRLPQFLT 120

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            K+   L+      T      +  R+ AIL LLY  GLR+SE +SL  ++   +   +++
Sbjct: 121 TKEIEKLLQAPFPDTP-----LGWRDKAILELLYSSGLRVSELISLKLESYYPEHFQIKV 175

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
            GKG+K R VP+    ++A+ +Y       L     +  +F   RG+PL     ++ I  
Sbjct: 176 LGKGNKERAVPIGKCAKEALDKYIAEGRTKLLAKKTRGEVFLNQRGQPLTRSRIRQLIIH 235

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             R  G+      H LRH+FA+HL+ NG DLR IQ +LGH  ++TTQIYT+VN K+    
Sbjct: 236 YARLGGIDKKVYPHLLRHTFASHLVENGADLRVIQELLGHANIATTQIYTHVNLKH---- 291

Query: 310 MMEIYDQTHP 319
           + EI+ + HP
Sbjct: 292 LKEIHRRCHP 301


>gi|304385052|ref|ZP_07367398.1| tyrosine recombinase XerD [Pediococcus acidilactici DSM 20284]
 gi|304329246|gb|EFL96466.1| tyrosine recombinase XerD [Pediococcus acidilactici DSM 20284]
          Length = 296

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 154/303 (50%), Gaps = 19/303 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L++ERGLS  T+ SY  + R    FL     ++  I  I+ +    I  ++   +
Sbjct: 8   DYLHALKVERGLSDNTIVSYRQELRHLQNFL-----QEQHIADIKDVDRYTILNYLDALK 62

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  S   ++S ++ F KYL        + ++N+   K++  LP  L  ++      
Sbjct: 63  QTGRARSSSIHTISSLRKFFKYLLLNDQIQTNPMVNIDPPKRAQHLPSVLTTEEV----- 117

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL     +K +  R+ AIL ++Y  GLR+SE ++L    +  +   +   GKG+K RI
Sbjct: 118 ERLLKVPDTSKPLGIRDRAILEVMYATGLRVSELIALNLNELHLEMGLIETVGKGNKQRI 177

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLN-PGVFQRYIRQLRRYLGL 256
           +P+   V    LE Y   P    L  +    +F    G PL   GV++    Q+++  G+
Sbjct: 178 IPI-GDVAIQWLERYINGPRRALLGAKRYNEIFLNQHGHPLTRQGVWKNLKAQVQK-AGI 235

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + T HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT++  +     ++++YD+
Sbjct: 236 KKNITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITQQR----LVDVYDK 291

Query: 317 THP 319
            HP
Sbjct: 292 YHP 294


>gi|255326004|ref|ZP_05367092.1| tyrosine recombinase XerC [Rothia mucilaginosa ATCC 25296]
 gi|255296895|gb|EET76224.1| tyrosine recombinase XerC [Rothia mucilaginosa ATCC 25296]
          Length = 358

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/332 (29%), Positives = 166/332 (50%), Gaps = 27/332 (8%)

Query: 1   MEGNNLPEI---VSFELLKERQNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEE 56
           +E + LPE    VS E+ +   +  +  L  E+  S+ T++SY  D   F  ++A     
Sbjct: 39  VESSALPESALGVSGEVFRPVLDRFERFLRYEKHRSEETIRSYISDLEGFFGYMA----- 93

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           +  ++ +  +  + IR ++     ++    ++ R  S +++F  + ++ ++   +    M
Sbjct: 94  RRGVRHLDSIDASPIREWLGSLHLRQAARSTVARRGSTLRTFFTWAQEEELVHANPTRGM 153

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS------AILYLLYGCGLRI 170
           R  K+ N LP  L+ +Q      N LL T  E +  D R++      A++ +LY  G+RI
Sbjct: 154 RTPKRENHLPPVLSREQM-----NQLLTTLQERRAQDPRDARLLRLEAVVEVLYASGMRI 208

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQ--L 227
           SE   L  Q++     T+R+ GKG+K R+VPL     KA+  +     P  +    Q   
Sbjct: 209 SELTGLDLQSVDRANKTVRVLGKGNKERVVPLGTPALKALNRWVSYGRPQWIPEGAQGVT 268

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
            LF G RG   N    +  + +L R +    ++ AH LRHS ATHL+  G D+RS+Q +L
Sbjct: 269 ALFIGPRGGRANARQIREDLTRLLRTVENTQASGAHVLRHSAATHLVDGGADIRSVQELL 328

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           GH  L+TTQIYT+V+ K     + E Y + HP
Sbjct: 329 GHSSLATTQIYTHVSMKR----LAETYARAHP 356


>gi|255689937|ref|ZP_05413612.1| tyrosine recombinase XerD [Bacteroides finegoldii DSM 17565]
 gi|260624543|gb|EEX47414.1| tyrosine recombinase XerD [Bacteroides finegoldii DSM 17565]
          Length = 319

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/286 (32%), Positives = 157/286 (54%), Gaps = 13/286 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + Q L++E+ LS  TL++Y  D  + L FL   T E I I  +      +++ F +  
Sbjct: 18  RKYQQYLKLEKSLSPNTLEAYLTDLDKLLSFL---TLEGINILDV---CLADLQRFAAGL 71

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               I  RS  R LSGIKSF ++L    I  +    +   L +S ++   L E   +  +
Sbjct: 72  HDIGIHPRSQARILSGIKSFFRFL----IMADYLEADPSELLESPNIGLKLPEVLTVEEI 127

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D ++  T   +K    RN AIL  LY CGLR+SE ++L   ++  D+  ++++GKG+K R
Sbjct: 128 DRIIA-TVDRSKAEGQRNRAILETLYSCGLRVSELVNLKLSDLYFDEGFIKVEGKGNKQR 186

Query: 199 IVPLLP-SVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGL 256
           ++P+ P ++ +  L + D    ++    +  +F  +R GK L+  +    I++L +   +
Sbjct: 187 LIPISPRAINEIKLYFTDRNQIEVKSGHEDFVFISLRRGKRLSRIMIFHMIKELAQQASI 246

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++
Sbjct: 247 TKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHID 292


>gi|331701475|ref|YP_004398434.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929]
 gi|329128818|gb|AEB73371.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929]
          Length = 314

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 149/290 (51%), Gaps = 11/290 (3%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q +L+ L+ +R  S  T+Q+Y+    +F  FLA    E+   + + Q+   ++ AF+
Sbjct: 9   KNIQWFLKYLQSDRHYSTDTIQAYQQAIAEFTRFLAEIPSER---KPLTQVDSFDVEAFL 65

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQA 134
           S    +K    S+ + +S +KSF  +L K  +   +N     +LK ++  LPR L + + 
Sbjct: 66  SDLYERKYARNSIAQKVSALKSFYAFLVKNTVIA-NNPFEYVHLKSNHRRLPRFLYQNEM 124

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L      + +H+   +  R++A+L  LY  G+R+SE   +   +I  D  T+ + GKG
Sbjct: 125 RALFQGARQNPNHQ---LGLRDTAVLETLYATGIRVSECAGIQLNDIDLDNRTILVTGKG 181

Query: 195 DKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLR 251
           +K R VP     ++AI  Y      P     +   P LF    G+PL     +  + Q+ 
Sbjct: 182 NKQRYVPFGEYAQEAIETYLSDARSPIMAKYHQDHPFLFVNHYGRPLTSRGIEYLMDQIV 241

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +   L      H LRH+FAT +L+NG D+RS+Q +LGH  LSTTQIYT+V
Sbjct: 242 KQSSLTTKIHPHMLRHTFATEMLNNGADMRSVQELLGHSSLSTTQIYTHV 291


>gi|224476375|ref|YP_002633981.1| putative site-specific recombinase XerC [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|254799358|sp|B9DPG4|XERC_STACT RecName: Full=Tyrosine recombinase xerC
 gi|222420982|emb|CAL27796.1| putative site-specific recombinase XerC [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 296

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 163/307 (53%), Gaps = 22/307 (7%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K ++++L  L++ER  SK TL+SY  D  QF  FL     E + +++     Y + R ++
Sbjct: 3   KIQESFLYMLKVERFFSKHTLKSYHDDLVQFNAFLE---HEHLKLKS---FEYKDARNYL 56

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           S   ++ +   ++ R +S ++SF ++   +  T  +  + + + KK   LP    E++  
Sbjct: 57  SFLYSKGLKRTTVSRKISTLRSFYEFWMTQDDTVVNPFVQLVHPKKEQYLPHFFYEEEM- 115

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
               + L  T         R+  IL LLYG G+R+SE +++  +++  +   +++ GKG+
Sbjct: 116 ----SALFETVEADGHKGLRDRVILELLYGTGIRVSELVNIKLEDLDLNSPGVKVLGKGN 171

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQ--LRR 252
           K R +P     R++I  Y +L P   N+     L   I G+P+   GV  RY+    ++R
Sbjct: 172 KERFIPFGNMCRESIERYLELFPPIQNVKHDY-LLVNINGRPITERGV--RYVLNDIVKR 228

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+      H LRH+FATH+L+ G DLR++QS+LGH  LSTT  YT+V+++     + +
Sbjct: 229 TAGVT-DIHPHKLRHTFATHMLNEGADLRTVQSLLGHVNLSTTGRYTHVSNQQ----LRK 283

Query: 313 IYDQTHP 319
           +Y   HP
Sbjct: 284 VYLNAHP 290


>gi|225021521|ref|ZP_03710713.1| hypothetical protein CORMATOL_01542 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945903|gb|EEG27112.1| hypothetical protein CORMATOL_01542 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 305

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/306 (28%), Positives = 146/306 (47%), Gaps = 18/306 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK--- 77
           WL +L++E+G S  TL +Y  D  +++ +L       + +  + Q++ +++ A++++   
Sbjct: 9   WLTHLKVEKGYSSNTLSNYRRDLYRYVTWL-----HAVGVTDLNQVTTSQVEAYVTELRR 63

Query: 78  ----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
               R  + +   S  R+L   +   K+     + T     ++        LP  L   +
Sbjct: 64  GDPDRNIKPLAVSSAARALIVARGLHKFALLEGLVTTDVAADVSPPATGRHLPDVLTIAE 123

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D +   T      ID R+ A++ LLYG G RISE  +LT  N  D+   LRI GK
Sbjct: 124 ITQLIDAI--PTDDTASPIDLRDRALIELLYGTGARISEITALTVDNFHDNDGMLRITGK 181

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R+VP+      A+ +Y               L    RG+ L+       ++     
Sbjct: 182 GNKQRLVPVGSQAMAAVDQYLVRARPVFATGASHALLLNTRGRTLSRQSAWAVLKTAAAR 241

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    + HTLRHSFATHLL  G   R +Q +LGH  ++TTQIYT+V+++N    + + 
Sbjct: 242 AHITKDISPHTLRHSFATHLLEGGAGERVVQELLGHSSVTTTQIYTHVSAEN----LRQA 297

Query: 314 YDQTHP 319
           +  +HP
Sbjct: 298 WVMSHP 303


>gi|313202049|ref|YP_004040707.1| tyrosine recombinase xerd [Methylovorus sp. MP688]
 gi|312441365|gb|ADQ85471.1| tyrosine recombinase XerD [Methylovorus sp. MP688]
          Length = 298

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 157/302 (51%), Gaps = 18/302 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +++ +L +E GL++ TL+SY  D   F  +L  ++E    +    Q    +  AF    R
Sbjct: 11  SFVDHLWLEDGLARNTLESYRRDLALFAEWL--WSEHAKLLNQADQGDLQQYLAF----R 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                 RS+ R ++ ++ F +Y L++ +I+ +  +L +   K   SLP++LNE + + L 
Sbjct: 65  FPTSKPRSVSRLIASLRRFYRYGLREGQISVDPTLL-IDTPKLPRSLPKSLNEDEVVAL- 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
               L+     + I  R+ A+L  LY CGLR+SE + L    +  ++  +R+ GKG K R
Sbjct: 123 ----LNAPDIAQAIGLRDRAMLETLYACGLRVSELVGLRYTEVSLNEGVVRVTGKGSKTR 178

Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       +L Y  +  P  L   +   LF   RG+ +    F   I++     G+ 
Sbjct: 179 LVPLGEESVDWLLRYAREGRPQILQQRVSDSLFVTQRGEAMTRQAFWYLIKRYALQAGIH 238

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     + +++   
Sbjct: 239 KPLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARER----LKQLHAMH 294

Query: 318 HP 319
           HP
Sbjct: 295 HP 296


>gi|198284552|ref|YP_002220873.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218667700|ref|YP_002427220.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198249073|gb|ACH84666.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218519913|gb|ACK80499.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 302

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/313 (30%), Positives = 153/313 (48%), Gaps = 19/313 (6%)

Query: 11  SFELLKERQ---NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           S  L  ERQ    +L  L +E+ L + TL +Y  D  Q    LA   E  +T+ T    +
Sbjct: 3   SAGLSAERQRIDTFLDALWLEKNLGENTLTAYRQDLLQVAAALA---EWDLTLTTADDGA 59

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
              I   + +R       RS+ R LS ++ F  Y ++    +     N+++ +    LP 
Sbjct: 60  LARI---LGQRLQSGAALRSVVRLLSSVRRFYGYAEREGWVSRDPSRNLQSPRIGRVLPH 116

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L+E +        LL     T  +  R++A+L L+Y CGLR+SE ++L  + +      
Sbjct: 117 VLSETEI-----EALLAAPDCTHPLGLRDAAMLELMYACGLRVSELVNLETRQVDLSADM 171

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           + + GKG K R+VP+       + +Y  +  P  L   I   LF   RG  +    F + 
Sbjct: 172 VVVFGKGRKERLVPMGEVAAGRVTQYLQMGRPQILGQRISAALFVTGRGAAMTRQRFWQN 231

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           I +  R  G+  + + H+LRH+FATHLL++G DLRS+Q +LGH  LSTT+IYT+V     
Sbjct: 232 IERYARSAGITQTVSPHSLRHAFATHLLNHGADLRSVQLMLGHAALSTTEIYTHVAQAR- 290

Query: 307 GDWMMEIYDQTHP 319
              +  ++ + HP
Sbjct: 291 ---LKALHAKHHP 300


>gi|282854671|ref|ZP_06264006.1| phage integrase, N-terminal SAM domain protein [Propionibacterium
           acnes J139]
 gi|282582253|gb|EFB87635.1| phage integrase, N-terminal SAM domain protein [Propionibacterium
           acnes J139]
 gi|314981983|gb|EFT26076.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL110PA3]
 gi|315090894|gb|EFT62870.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL110PA4]
          Length = 300

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 128/255 (50%), Gaps = 4/255 (1%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           ++  +++RA+++  R       +++R  S  + F ++     + +      + ++K    
Sbjct: 48  RIGISQVRAWLADTRVAGASAATMQRRWSAARVFFRWAANEGLVSADPTATLNSVKVPKR 107

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   QA  ++D  +    H+     AR++AIL +LYG GLR+ E   L   ++   
Sbjct: 108 LPATLGVDQARHILDEAVAQARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRS 167

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           + T+++ GKGDK R VP+     +AI  +       +  +    LF G RG+ ++  V +
Sbjct: 168 RHTVKVTGKGDKERTVPMGAPALRAIDTWLPRREEWVGPHSGQALFLGERGRRIDQRVVR 227

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R +    R          H LRH+ ATHLL  G DLR++Q +LGH  L+TTQIYT+V+++
Sbjct: 228 RVVHTHLRAEPDSPDLGPHGLRHAMATHLLEGGADLRTVQDMLGHKSLATTQIYTHVSTE 287

Query: 305 NGGDWMMEIYDQTHP 319
                +   + Q HP
Sbjct: 288 R----LRTAFRQAHP 298


>gi|317121809|ref|YP_004101812.1| integrase family protein [Thermaerobacter marianensis DSM 12885]
 gi|315591789|gb|ADU51085.1| integrase family protein [Thermaerobacter marianensis DSM 12885]
          Length = 336

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 151/327 (46%), Gaps = 20/327 (6%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           EG   PE          + +L +L +ERGL+  TL++Y  D   +L FL    E  +   
Sbjct: 10  EGPGRPEAGGPPAADVVEAYLDHLRLERGLAVRTLEAYAADLAGWLDFLGL--EPPVDAA 67

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           T+ +++  ++R ++++   + +   ++ R L+ ++   ++  +      S    +   + 
Sbjct: 68  TLGRVTGRDLRRWLAQLDQRGLQRSTVARKLAAVRGLFRFAVREGWIPASPAARLGTPRV 127

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              LPR    ++A  L++     T         RN A+L LLYGCGLR+ E   L   ++
Sbjct: 128 RRRLPRVYTPEEARALLEAAGAGTGPAAL----RNRALLELLYGCGLRVGELSGLDLDDV 183

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIR------ 234
             +   LR+ GKG K RI+PL   V  A+  Y  D  P         P   G R      
Sbjct: 184 DWEGGWLRVYGKGGKERILPLAGPVAAALRAYVEDGRPHLAAARGSRPCPPGDRQAVFLN 243

Query: 235 --GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
             G  L+P   Q  +R+    +   L    H LRH+FATHLL  G  LR++Q +LGH  L
Sbjct: 244 RWGGRLSPRSIQAIVRKAGAVVAR-LEAHPHLLRHTFATHLLDGGAGLRAVQELLGHASL 302

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHP 319
           + TQIYT+V+       +  +Y Q HP
Sbjct: 303 AATQIYTHVSRAR----LWAVYRQAHP 325


>gi|317124968|ref|YP_004099080.1| tyrosine recombinase XerD subunit [Intrasporangium calvum DSM
           43043]
 gi|315589056|gb|ADU48353.1| tyrosine recombinase XerD subunit [Intrasporangium calvum DSM
           43043]
          Length = 311

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/319 (30%), Positives = 154/319 (48%), Gaps = 19/319 (5%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P+  + +L +E + WL ++ IE+G S  TL+SYE D R++   L     E+        +
Sbjct: 3   PKPRTTQLDREVRGWLDHVRIEKGASDNTLKSYERDLRKYREHLHHRGIERAA-----AV 57

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           S  ++  F++  R + +   S  R+L  ++ F ++L            N+      + LP
Sbjct: 58  SERDVTDFLASLRERGLAASSAARTLVAVRGFHRFLALEGEVAGDPAGNVAPPTPPSRLP 117

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN----IM 182
           +A+     +  V+ +L  +S        R+ A+L +LYG G RISEA+ L   +    + 
Sbjct: 118 KAIP----IEAVERLLAASSVGDTPESLRDRALLEVLYGVGARISEAIDLDVDDLDTGVA 173

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNP 240
            +   +R+ GKG K RIVP+     +A+  Y       L    Q    LF   RG+ L+ 
Sbjct: 174 GEVGLVRLLGKGSKERIVPVGRFAVEAVDAYLVRGRPALAQRGQGGPALFLNQRGRRLSR 233

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                 +++     GL    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT 
Sbjct: 234 QSAWSVVQRAAERAGLTEHVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTL 293

Query: 301 VNSKNGGDWMMEIYDQTHP 319
           V+       + E+Y   HP
Sbjct: 294 VSPHR----LREVYAGAHP 308


>gi|152971840|ref|YP_001336949.1| site-specific tyrosine recombinase XerD [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238896434|ref|YP_002921172.1| site-specific tyrosine recombinase XerD [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262042535|ref|ZP_06015692.1| tyrosine recombinase XerD [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330010972|ref|ZP_08306937.1| tyrosine recombinase XerD [Klebsiella sp. MS 92-3]
 gi|150956689|gb|ABR78719.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238548754|dbj|BAH65105.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259040095|gb|EEW41209.1| tyrosine recombinase XerD [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328534349|gb|EGF60959.1| tyrosine recombinase XerD [Klebsiella sp. MS 92-3]
          Length = 298

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 156/303 (51%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER L++ TL +Y    R   + + +     +++ ++      +++A +++R
Sbjct: 9   EQFLDALWLERNLAENTLSAYR---RDLTMLVEWLHHRGLSLASV---GSDDLQALLAER 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           ++      S  R LS ++ F ++L + KI  +     + + K    LP+ L+E Q   L+
Sbjct: 63  QSGGYKATSTARLLSAVRRFFQHLYREKIRPDDPSALLASPKLPQRLPKDLSEAQVERLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  LR+ GKG+K R
Sbjct: 123 QAPLVEQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVLRVVGKGNKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       +  Y +   P+ LN      LF   R + +    F   I+      G+ 
Sbjct: 178 LVPLGEEAVLWVENYLEYGRPWLLNGVASDVLFPSQRAQQMTRQTFWHRIKHYAVLAGID 237

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q
Sbjct: 238 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQ 293

Query: 317 THP 319
            HP
Sbjct: 294 HHP 296


>gi|300705544|ref|YP_003747147.1| site-specific tyrosine recombinase [Ralstonia solanacearum
           CFBP2957]
 gi|299073208|emb|CBJ44566.1| site-specific tyrosine recombinase [Ralstonia solanacearum
           CFBP2957]
          Length = 329

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/326 (30%), Positives = 163/326 (50%), Gaps = 41/326 (12%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L+ ER LS  TL++Y   TR+  +           +   R L +  IR+ I+    
Sbjct: 23  YLDVLKFERQLSPHTLENY---TRELAVLQRLGARFAAGVDLTRLLPH-HIRSMIAHLHG 78

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVD 139
             +  RS+ R+LS  + + K+L  R+    +N ++ +R  K    LP+AL+ +QA+ L++
Sbjct: 79  NGLSGRSIARALSVWRGWYKWLALREAAVTANPVDGVRAPKSPKRLPKALSVEQAVALME 138

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----------MD-DQSTL 188
             L     ET     R+ A+  L Y CGLR+SE + L  +++          +D +   +
Sbjct: 139 Q-LPGDDPET----VRDRAVNELFYSCGLRLSELVGLDLRHVKAGDYASAGWLDLEAREV 193

Query: 189 RIQGKGDKIRIVPL----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
            + GKG+K R VP+            +VR   L   D  P D +      LF   RGK L
Sbjct: 194 MVLGKGNKYRTVPVGSKAAEALAAWLAVRPQ-LARPDAAPEDAHA-----LFLSARGKRL 247

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                Q  +++     G+P     H LRHSFATH+L + GDLR++Q +LGH  +++TQ+Y
Sbjct: 248 TQRQIQIRMKRNAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVY 307

Query: 299 TNVNSKNGGDWMMEIYDQTHPSITQK 324
           T+++ ++    + +IYDQ HP   +K
Sbjct: 308 TSLDFQH----LAKIYDQAHPRAKKK 329


>gi|254000090|ref|YP_003052153.1| tyrosine recombinase XerD [Methylovorus sp. SIP3-4]
 gi|253986769|gb|ACT51626.1| tyrosine recombinase XerD [Methylovorus sp. SIP3-4]
          Length = 298

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 157/302 (51%), Gaps = 18/302 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +++ +L +E GL++ TL+SY  D   F  +L  ++E    +    Q    +  AF    R
Sbjct: 11  SFVDHLWLEDGLARNTLESYRRDLALFADWL--WSEHAKLLNQADQGDLQQYLAF----R 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                 RS+ R ++ ++ F +Y L++ +++ +  +L +   K   SLP++LNE + + L 
Sbjct: 65  FPTSKPRSVSRLIASLRRFYRYGLREGQVSVDPTLL-IDTPKLPRSLPKSLNEDEVVAL- 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
               L+     + I  R+ A+L  LY CGLR+SE + L    +  ++  +R+ GKG K R
Sbjct: 123 ----LNAPDIAQAIGLRDRAMLETLYACGLRVSELVGLRYTEVSLNEGVVRVTGKGSKTR 178

Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       +L Y  +  P  L   +   LF   RG+ +    F   I++     G+ 
Sbjct: 179 LVPLGEESVDWLLRYVREGRPQILQQRVSDSLFVTQRGEAMTRQAFWYLIKRYALQAGIH 238

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     + +++   
Sbjct: 239 KPLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARER----LKQLHAMH 294

Query: 318 HP 319
           HP
Sbjct: 295 HP 296


>gi|308188856|ref|YP_003932987.1| Tyrosine recombinase xerC [Pantoea vagans C9-1]
 gi|308059366|gb|ADO11538.1| Tyrosine recombinase xerC [Pantoea vagans C9-1]
          Length = 301

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 152/301 (50%), Gaps = 19/301 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+ L++ER LS LT  SY    RQ    +A   E K+   +  QL   ++R+  ++ R
Sbjct: 11  GFLRYLKVERQLSPLTQSSY---ARQLAALVAIADEMKLG--SWAQLEPAQVRSMAARSR 65

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +   SL   LS ++SFL +   + + + +    +   +K+  LP+ ++  +   L++
Sbjct: 66  RAGLSASSLALRLSALRSFLDWQVSQGLLSANPAKGVMTPRKARHLPKNIDVDEVNQLLE 125

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             L         +  R+ A+L ++YG GLR+SE +++  +++  D   + + GKG K R 
Sbjct: 126 IDL------NDPLAVRDRAMLEVMYGGGLRLSELVNMDCRHVDLDSGEVWVVGKGSKERR 179

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+    R A+       P       Q   LF   RG  ++P   Q+   +     G+  
Sbjct: 180 VPI---GRTAVTWIQHWLPLRETFGGQDDALFLSTRGNRISPRNVQKRFAEWGVRQGVAS 236

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRHSFATHLL + GDLR++Q +LGH  LSTTQIYT+++ ++    +  +YD  H
Sbjct: 237 HIHPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LASVYDAAH 292

Query: 319 P 319
           P
Sbjct: 293 P 293


>gi|90408775|ref|ZP_01216920.1| integrase/recombinase (XerC/CodV family) [Psychromonas sp. CNPT3]
 gi|90310119|gb|EAS38259.1| integrase/recombinase (XerC/CodV family) [Psychromonas sp. CNPT3]
          Length = 298

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 168/311 (54%), Gaps = 16/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L K+   +L ++  +RGLS +T+++Y  +  +F+  L     E   I++ + L+   +R 
Sbjct: 3   LQKQIDRYLNHIASQRGLSPITIKNYSRNLAEFISLL-----EPQNIKSWQDLNSDHVRL 57

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            I +   + I  RS+   +S ++SFL++L + ++ T +    +   K +  LP+ ++  +
Sbjct: 58  IIKELHQKGIKSRSIATKISALRSFLEFLVQDEVLTFNPAKGVVTPKLNKPLPKNISVDE 117

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++       HE   +  R+  ++ L+Y  GLR+SE + +  +++   ++ + + GK
Sbjct: 118 VFQLLN------IHEDDPLSLRDQCMMELMYSSGLRLSELVGIDLKDLKLREAEVMVLGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R++P+     +++  +  + P +L  + +  LF   + K ++    Q  + +    
Sbjct: 172 GSKQRLLPITKKAVESLRAWLKVRP-ELCESGEQALFVSKQKKRISARNVQMRMEKWGLQ 230

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             LP     H LRHSFATH+L + G+LR++QS+LGH  LSTTQ+YT+++ ++    + E+
Sbjct: 231 QQLPSHLNPHKLRHSFATHMLESSGNLRAVQSLLGHANLSTTQVYTHLDFQH----LAEV 286

Query: 314 YDQTHPSITQK 324
           YD+ HP   +K
Sbjct: 287 YDKAHPRAKRK 297


>gi|296121441|ref|YP_003629219.1| tyrosine recombinase XerD [Planctomyces limnophilus DSM 3776]
 gi|296013781|gb|ADG67020.1| tyrosine recombinase XerD [Planctomyces limnophilus DSM 3776]
          Length = 315

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 149/302 (49%), Gaps = 15/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + ++  L+ E GL++ T+ SYE D ++F  +       ++T  T++ LS      ++   
Sbjct: 26  EGFVAYLQGECGLARNTVISYERDIKRFSDWFHESGVVRVTDITLQDLS-----GYLRYL 80

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
              K+   ++ R L  +K F +YL    I  ES    + + K    LP+ L+E       
Sbjct: 81  HELKLATSTIARHLVSLKMFFRYLMLEGILKESVADLLNSPKLWEHLPKVLSEDAV---- 136

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            N LL           R+ A+L +LY  G R SE  SL  +++  D+   R  GKG+K R
Sbjct: 137 -NRLLDAPMHQDLNPYRDRALLAVLYATGCRASEVCSLKMRDLQLDEGFCRCVGKGNKER 195

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +V L P    A+  Y     P     N+  P+F    G+ ++     + +++    +GL 
Sbjct: 196 LVSLNPVAVSALKTYLARERPARAGTNLDSPVFTSRSGRSIDRIQVWKLVKRYASRIGLS 255

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + T HTLRHSFATH+L+NG ++R++Q +LGH  + TTQIYT+V        +  I+ Q 
Sbjct: 256 DAVTPHTLRHSFATHMLANGAEIRALQELLGHASIRTTQIYTHVEHSR----LKAIHKQC 311

Query: 318 HP 319
           HP
Sbjct: 312 HP 313


>gi|314923769|gb|EFS87600.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL001PA1]
 gi|314966217|gb|EFT10316.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL082PA2]
 gi|315095107|gb|EFT67083.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL060PA1]
 gi|315104336|gb|EFT76312.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL050PA2]
 gi|327328115|gb|EGE69884.1| putative tyrosine recombinase XerC [Propionibacterium acnes
           HL103PA1]
          Length = 300

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 128/255 (50%), Gaps = 4/255 (1%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           ++  +++RA+++  R       +++R  S  + F ++     + +      + ++K    
Sbjct: 48  RIGISQVRAWLADTRVAGASAATMQRRWSAARVFFRWAANEGLVSADPTATLNSVKVPKR 107

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   QA  ++D  +    H+     AR++AIL +LYG GLR+ E   L   ++   
Sbjct: 108 LPATLGVDQARHILDEAVAQARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRS 167

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           + T+++ GKGDK R VP+     +AI  +       +  +    LF G RG+ ++  V +
Sbjct: 168 RHTVKVTGKGDKERTVPMGAPALRAIDTWLPRREEWVGPHSGQALFLGERGRRIDQRVVR 227

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R +    R          H LRH+ ATHLL  G DLR++Q +LGH  L+TTQIYT+V+++
Sbjct: 228 RVVHTHLRAEPDSPDLGPHGLRHAMATHLLEGGADLRTVQDMLGHKSLATTQIYTHVSTE 287

Query: 305 NGGDWMMEIYDQTHP 319
                +   + Q HP
Sbjct: 288 R----LRTAFRQAHP 298


>gi|253681771|ref|ZP_04862568.1| tyrosine recombinase XerD [Clostridium botulinum D str. 1873]
 gi|253561483|gb|EES90935.1| tyrosine recombinase XerD [Clostridium botulinum D str. 1873]
          Length = 292

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 154/295 (52%), Gaps = 19/295 (6%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +++ LSK T+++Y+ D  +F  FL    E       I +     I A++   + ++  D 
Sbjct: 13  LKKELSKNTIEAYKRDLLKFAKFLNKRHE------NILESDMVSIMAYVQILKKERKADS 66

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--LLH 144
           S+ RSL  I++F K+L K     ++ ++N    K   +LP  L        VD V   L 
Sbjct: 67  SIIRSLVAIRNFYKFLIKTGENVDNPLINYEVPKNKRTLPEILT-------VDEVDKFLS 119

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
               +++   R+ A+L L+Y  G+++SE L +T  ++    S ++ +G  DK RI+P+  
Sbjct: 120 APDCSEYKGIRDKAMLELMYATGMKVSELLKITIFDVNLKLSYIKCKGAKDKERIIPIGS 179

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
                + EY  +    +N +    LF  +RG  +    F + +++  +   +     ++T
Sbjct: 180 YAVNCLNEYLKVRD-KMNADNSELLFCNLRGGKMTRQGFWKIVKKYAKDANINKKIDSYT 238

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           LRHSFA HLL NG D++S+Q +LGH  ++TTQIY++++ KN    ++++Y + HP
Sbjct: 239 LRHSFAVHLLQNGADMKSVQELLGHNTIATTQIYSSISKKNK---IVDVYKKAHP 290


>gi|114776721|ref|ZP_01451764.1| tyrosine recombinase [Mariprofundus ferrooxydans PV-1]
 gi|114552807|gb|EAU55238.1| tyrosine recombinase [Mariprofundus ferrooxydans PV-1]
          Length = 298

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 152/305 (49%), Gaps = 20/305 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +LQ L   R  S  T+ +Y  D       L  + E    I  ++Q++  +++ ++     
Sbjct: 13  YLQELAEVRLASPHTIAAYRRD-------LGAFGEHCGNI-GLQQITRLQVQDWLVVGHA 64

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   +L R LS +   L    +  I   +    +R  KKS  LPR L  +Q       
Sbjct: 65  KGLAAATLARRLSALTGLLDSAVQAGICPANVAAGVRPPKKSARLPRTLPPEQT-----A 119

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            L+  +H +   D R+ A+L ++YG GLR+SEA+ L   +I      LR+ GKG K RIV
Sbjct: 120 ALMQPTHASA--DRRDLALLAVMYGAGLRVSEAVGLDLHDIDLHSCELRVLGKGSKQRIV 177

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           PL  +    + ++ D     L +  +  +F    G+ L     QR ++      G  +S 
Sbjct: 178 PLPTTAADLLGQWLDERLLGL-VRDERAVFLNRFGQRLTARSVQRMLKTRALESGADISV 236

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           T H LRHSFATHLL+ G DLR+IQ +LGH  L+TT+ YT+++       + E+YD++HP 
Sbjct: 237 TPHRLRHSFATHLLAGGVDLRAIQELLGHASLATTERYTHLDIAK----LTEVYDRSHPR 292

Query: 321 ITQKD 325
             ++D
Sbjct: 293 AGRRD 297


>gi|281421506|ref|ZP_06252505.1| integrase/recombinase XerD [Prevotella copri DSM 18205]
 gi|281404578|gb|EFB35258.1| integrase/recombinase XerD [Prevotella copri DSM 18205]
          Length = 318

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 149/292 (51%), Gaps = 20/292 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N+++ L++ R  SK TL +Y  D    L FL  Y ++   + T  ++   ++  F +  
Sbjct: 7   KNYMRYLKLGRNFSKNTLDAYYHD----LNFLLEYADKNNLVLT--EMKLEDLENFSASL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +  RS  R LSGI+SF +YL       +     + + +    LP  L+ ++   L 
Sbjct: 61  HDRGVSARSQARILSGIRSFYRYLVLDDYIKDDPTELLVSPQIGKHLPEYLSVEEVDMLE 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             + L      KW   RN AI+ +L+ CGLR+SE ++L   ++ +++  +R+ GKG+K R
Sbjct: 121 AAIDLE-----KWEGQRNKAIIEILFSCGLRVSELVNLKKSDVFEEEKFIRVIGKGNKER 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRY 253
           IVP+     K I  +Y     D NL    P     +F   RG  L   +    I+     
Sbjct: 176 IVPISGKALKEINLWY----IDRNLMTIKPGEEDYVFLNRRGAHLTRNMILIMIKNAAYD 231

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            G+  + + HTLRHSFAT LL  G DLR IQ++LGH  + TT+IYT++ + +
Sbjct: 232 AGIKKTISPHTLRHSFATALLKGGADLRVIQALLGHEDIGTTEIYTHLETSD 283


>gi|255524155|ref|ZP_05391115.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296186613|ref|ZP_06855015.1| putative tyrosine recombinase XerD [Clostridium carboxidivorans P7]
 gi|255512140|gb|EET88420.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296048650|gb|EFG88082.1| putative tyrosine recombinase XerD [Clostridium carboxidivorans P7]
          Length = 292

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 163/303 (53%), Gaps = 24/303 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +++NLE ++ +SK T+ +Y  D  +F  F+    E  + I+ +       I A++ + + 
Sbjct: 8   YIENLE-KKNVSKNTMDAYVRDISKFYNFIKERNENVVEIEVV------SIMAYVQQLQK 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     S+ R++  +++F KYL  +    E+ ++N    K  +++P+ L  ++  TL+  
Sbjct: 61  EGRATSSIIRNIVSLRNFYKYLTIKGFINENPMINYEIPKVKHNIPKILTVEEVDTLLST 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L T+        R+ A+L +LY  G++++E L++T  +I    + ++ +G  ++ RI+
Sbjct: 121 PDLGTNK-----GIRDKAMLEVLYATGMKVTEILNITIYDINLKLAYIKCKGSKNQERII 175

Query: 201 PLLPSVRKAILEYYDLCP----FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           P+     + + EY  +      ++L+L     LF  +RG  +    F + ++   +  G+
Sbjct: 176 PIGSIAIQCLQEYLKIRSQINIYNLDL-----LFINLRGIQMTRQGFWKIVKYYAKAAGV 230

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                A TLRHSFA HLL NG D++S+Q +LGH  LS TQIY++++ KN    + E+Y +
Sbjct: 231 DKHINAFTLRHSFAVHLLQNGADIKSVQELLGHKDLSATQIYSSISRKNK---IAEVYKK 287

Query: 317 THP 319
           +HP
Sbjct: 288 SHP 290


>gi|227431599|ref|ZP_03913636.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352657|gb|EEJ42846.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 300

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 139/287 (48%), Gaps = 9/287 (3%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +E Q +   LE ER  S  TL++Y  D  +F  +L     E        ++   ++R ++
Sbjct: 4   REEQLYHDYLESERQYSPQTLKAYLTDIAEFKNYL----HESGGFTKFGEVQTLDVRVYL 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +K+   ++ R +S ++ F ++L   +   ++   ++   K  N LP    E +  
Sbjct: 60  NDLYEKKLARTTISRKISSLRMFYQFLIINQFAIDNPFDSISLKKHQNQLPDFFYEDELH 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L D    H  H   W   RN+A+L  LY  G+R++E   LT   +   Q  + I GKG+
Sbjct: 120 ELFDVTYNHEDH--LW--ERNAALLEFLYATGIRVAEIAGLTLSQLDFSQRLVLIHGKGN 175

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K R VP        + EY       L +N +   +F   RG+P+ P      + QL +  
Sbjct: 176 KDRYVPFGHFAENIMKEYITDLRASLTVNQEHEYVFVNHRGEPITPAGITYILNQLMQRS 235

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            L      H LRH+FATHL++ G D+R++Q +LGH  LSTTQ+YT+V
Sbjct: 236 ALTGKIHPHMLRHTFATHLINRGADMRTVQELLGHVNLSTTQMYTHV 282


>gi|311113476|ref|YP_003984698.1| tyrosine recombinase XerC [Rothia dentocariosa ATCC 17931]
 gi|310944970|gb|ADP41264.1| tyrosine recombinase XerC [Rothia dentocariosa ATCC 17931]
          Length = 356

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 152/299 (50%), Gaps = 13/299 (4%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  E+  S+ T++SY  D   F  F+      +  I  +  ++   IR ++     ++  
Sbjct: 65  LRYEKYRSEETIRSYISDLCGFFGFIG-----RRGISRVEDVNLQLIREWLGSMHLKQNA 119

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             ++ R  S +++F  +  + ++ TE+    M   K+   LP  L+++Q  +++D V L 
Sbjct: 120 KTTVARRGSTLRTFFSWAHEEELITENPTRGMSTPKRDRHLPAVLSQEQMSSVLDTVALR 179

Query: 145 TSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
                + I   R  A+L +LY  G+RISE   L   ++     T+R+ GKG+K R+VPL 
Sbjct: 180 CRENPQDIRMLRLWAVLEVLYSSGMRISELTGLNLSSVDRANKTVRVIGKGNKERVVPLG 239

Query: 204 PSVRKAILEYYDLC-PFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
               K + ++  +  P+ +    +    LF G RGK  NP   +  I ++ R L     +
Sbjct: 240 TPAMKVLSQWVKIGRPYWIAKGSRDVTALFIGPRGKRANPRQIREDISRILRTLENTEVS 299

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            AH LRHS ATHL+  G D+R++Q +LGH  LSTTQIYT+V+ K     + + Y + HP
Sbjct: 300 GAHVLRHSAATHLVDGGADIRTVQELLGHASLSTTQIYTHVSMKR----LADTYIRAHP 354


>gi|237785449|ref|YP_002906154.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758361|gb|ACR17611.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 326

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 150/306 (49%), Gaps = 19/306 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++ +L +E+  S  TL +Y+ D  +++ +L    +  + I ++ +    +I  FI+  R 
Sbjct: 31  YIDHLAVEKNASPNTLSNYQRDLNKYVAWL---DQHDLNIDSVDE---PDIEQFIADLRR 84

Query: 81  -------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
                    +   S  R+   ++S  ++  +           +  L+   SLP AL  +Q
Sbjct: 85  GDSTLGWSPLAASSAARATVAVRSLHRFSHEEGQLARDVAAGVTVLRSGQSLPHALTVEQ 144

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++   ++ S  +  I  R+ A++ LLYG G+RISEAL+L   +I  + + +R+ GK
Sbjct: 145 VNRLIEACPVNES--SNPIALRDRAVIELLYGTGMRISEALNLDIDSIDRNHAYVRVVGK 202

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R+VP+      AI  +       +       LF   RG  L      +++      
Sbjct: 203 GRKERLVPIGAPALHAIDAWLVRGRPSMVKRSDKALFLNARGNRLGRQSVWKFLHAAAER 262

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL  S   HTLRHS+ATHLL  G D+R++Q +LGH  ++TTQIYT V+  N    + E+
Sbjct: 263 CGLGDSVGPHTLRHSYATHLLQGGADIRAVQELLGHASVTTTQIYTAVSIDN----LREV 318

Query: 314 YDQTHP 319
           Y  +HP
Sbjct: 319 YATSHP 324


>gi|313897322|ref|ZP_07830865.1| phage integrase, N-terminal SAM domain protein [Clostridium sp.
           HGF2]
 gi|312957692|gb|EFR39317.1| phage integrase, N-terminal SAM domain protein [Clostridium sp.
           HGF2]
          Length = 307

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/318 (31%), Positives = 150/318 (47%), Gaps = 28/318 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q++L  ++     S  T+ SY  D +++L +L    + ++     R     +I++F+S  
Sbjct: 8   QDYLHYIQAVDQKSLATIHSYTQDLQEYLSWLQMQGKTEMEDILPR-----DIQSFLSDM 62

Query: 79  RTQKIGDRSL--KRS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
               I +  L  KRS     LS I  F +++     +     +++R  KK   LP   N 
Sbjct: 63  EQGDIQEDGLCYKRSSVNHMLSSIHMFHRFISMNHPSILDPSIHLRGGKKEQKLPLYFNP 122

Query: 132 KQALTLVDNVLLHTSHETKWIDARN---SAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
                L+D+            DA+     AIL LLYGCGLR+SE   L    +  +Q  L
Sbjct: 123 HDIELLLDSF---------GQDAQGLYQKAILELLYGCGLRVSEVCELRINQVHLEQGYL 173

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R+ GKGDK R+VP+     + +  Y               +F   RG  L        I+
Sbjct: 174 RVIGKGDKERMVPMHERCMRVLRTYLTQIRPTWEKRKSTRVFLNSRGNVLTRQYVHTLIK 233

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           Q  + LGL    +AH+ RHSFATHLL  G DLR +Q +LGH  ++TTQIYT+V ++    
Sbjct: 234 QRLQALGLDERLSAHSFRHSFATHLLDGGADLRVVQELLGHSDIATTQIYTHVQNRR--- 290

Query: 309 WMMEIYDQTHPSITQKDK 326
            + E  DQ HP   +K+K
Sbjct: 291 -LKEAIDQYHPRSVKKEK 307


>gi|94986683|ref|YP_594616.1| site-specific recombinase [Lawsonia intracellularis PHE/MN1-00]
 gi|94730932|emb|CAJ54295.1| site-specific recombinase [Lawsonia intracellularis PHE/MN1-00]
          Length = 306

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/300 (32%), Positives = 146/300 (48%), Gaps = 18/300 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL  L  ERGLS  T+Q+Y+ D     +F  F+ +      +I       I  FI   R 
Sbjct: 13  WLDKLISERGLSHNTIQAYKQDID---VFYLFFQDAGCNFNSIDD---EYIMLFIIWLRK 66

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +    R+L R LS I++F  +  +  I   +  L +   K  + LP  L++ + L L   
Sbjct: 67  RGDSSRTLARRLSSIRNFFHWCVEEDILLSNPALLIDGPKLPSLLPNILSQDEMLRL--- 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L T   T  +  R+  IL LLY  G+R+SE + +   +   D+  +++ GKG K R +
Sbjct: 124 --LTTPDITNKLGFRDKVILELLYASGIRVSELIGVHVLDFDQDKGIIKVFGKGGKERYI 181

Query: 201 PLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           PL  S  K ++ Y   + P  +   I+  LF    GK L      + I++      +  S
Sbjct: 182 PLHSSAMKLLIHYVQKIRP--MFTPIEKFLFLNRSGKGLTRQAIWKIIKRYALLASINKS 239

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HT RH+FATHLL  G DLRS+Q +LGH  +S T++YT+V S    D +  I+   HP
Sbjct: 240 ISPHTFRHTFATHLLEGGADLRSVQLLLGHVDMSATELYTHVQS----DRLKYIHSMFHP 295


>gi|46446417|ref|YP_007782.1| XerD protein [Candidatus Protochlamydia amoebophila UWE25]
 gi|46400058|emb|CAF23507.1| probable XerD protein [Candidatus Protochlamydia amoebophila UWE25]
          Length = 291

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/289 (31%), Positives = 150/289 (51%), Gaps = 13/289 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++++ +++   L  E+GL++ TL++Y  D   F  FL     ++ ++    Q+    I  
Sbjct: 1   MIRDLEDFFIYLASEKGLAQNTLEAYRRDLFSFATFL-----KQRSVNNWSQIHLQAIID 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++ ++ Q     S+ R+L  IK   ++LK+  + T + +L M   K    +P  L+   
Sbjct: 56  YLALKQQQHYASASICRALIAIKVLFRFLKREGMITTNILLLMETPKLWQLIPDVLS--- 112

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
            L  +D +L   + +T W  AR+ AIL  LY CGLR+SE   L   ++  D + +R+ GK
Sbjct: 113 -LEEIDRILAIPNIQT-WRGARDKAILETLYACGLRVSELCQLKIYDV--DDTFVRVLGK 168

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K RIVP+      AI  Y        N   +  LF   + KPL   +  + ++   R 
Sbjct: 169 GGKERIVPIGQQAIAAIDGYLSFREGGENSRNEF-LFITKKSKPLTRALVWKLVKFYARQ 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             +  S + HT RH+FATHLL +G DLR IQ +LGH  +++T  YT+V+
Sbjct: 228 ASIFKSISPHTFRHTFATHLLDHGADLRVIQDMLGHASINSTDRYTHVS 276


>gi|294634844|ref|ZP_06713366.1| tyrosine recombinase XerD [Edwardsiella tarda ATCC 23685]
 gi|291091717|gb|EFE24278.1| tyrosine recombinase XerD [Edwardsiella tarda ATCC 23685]
          Length = 299

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 151/303 (49%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +E+ L++ TL SY  D R    +LA++    +T       S  +++ F ++R
Sbjct: 10  EQFLDALWLEKNLAENTLASYRQDLRTLAEWLAYHDLSLLTA------SPGDLQNFFAQR 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL +  + T+     +   K    LP+ L+E Q     
Sbjct: 64  VDGGYKASSSARLLSALRRCYQYLYRETLRTDDPSAQLAAPKLPQRLPKDLSEAQV---- 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            + LL        ++ R+ A+L LLY  GLR+SE + L  +++   Q  +R+ GKG+K R
Sbjct: 120 -DALLQAPAIDNPLELRDKAMLELLYATGLRVSELVGLGQEDVSLRQGVVRVIGKGNKER 178

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       I  Y +   P+ +N      LF   R + +    F   I+      G+ 
Sbjct: 179 LVPLGEEAIYWIEYYLEYGRPWLVNGQTVAALFPSNRARQMTRQTFWHRIKHYAVLAGID 238

Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q
Sbjct: 239 TQRLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQ 294

Query: 317 THP 319
            HP
Sbjct: 295 HHP 297


>gi|229817402|ref|ZP_04447684.1| hypothetical protein BIFANG_02664 [Bifidobacterium angulatum DSM
           20098]
 gi|229785191|gb|EEP21305.1| hypothetical protein BIFANG_02664 [Bifidobacterium angulatum DSM
           20098]
          Length = 316

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/294 (30%), Positives = 151/294 (51%), Gaps = 25/294 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L   RGLS  TL+SY  D    L +L     E   I+ + +++  ++R ++ +R +    
Sbjct: 17  LGANRGLSGNTLKSYRTDVLDCLTYL-----ESQGIEALDEITIDDLRGWMGQR-SPSHA 70

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD---NV 141
             S+ R +  ++ F  +  +  I   +    ++  K +++LP  L+E QA  L+D     
Sbjct: 71  RSSMARGVVAVRCFFSWGYEHGIIRTNPASALKTPKIADTLPTVLSEDQAERLMDREDET 130

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
              +  + K +  R++AIL LLY  G+R++E + L   ++     T+++ GKG+K R+VP
Sbjct: 131 AAQSPDDPKAL--RDAAILELLYATGIRVAELVGLDIADVDFSNRTVKVTGKGNKQRVVP 188

Query: 202 L-LPSV----------RKAILEYYD-LCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIR 248
             LP+           R ++LE    +   D + +  +  LF G+RG+ L+  + +R + 
Sbjct: 189 FGLPAAHAVEAWLKHGRPSVLESCSGMQRTDGDADDAMRALFLGMRGRRLDQRMARRVVH 248

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              R  G+P     H LRHS ATHLL  G DLR +Q +LGH  L TTQ YT+V+
Sbjct: 249 DAARRAGVP-DVGPHALRHSAATHLLDGGADLREVQEMLGHSSLKTTQRYTHVS 301


>gi|282859943|ref|ZP_06269031.1| tyrosine recombinase XerD [Prevotella bivia JCVIHMP010]
 gi|282587346|gb|EFB92563.1| tyrosine recombinase XerD [Prevotella bivia JCVIHMP010]
          Length = 310

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 146/280 (52%), Gaps = 12/280 (4%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L++E+G S+ T+ +Y  D  +   +L     EK+ +  ++        A IS+     IG
Sbjct: 19  LKLEKGHSENTVDAYMHDIEKLSSYLK---AEKVDVLDVKLDDLEHFAASISE---IGIG 72

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            RSL R LSG++ F ++L             + + K+   LP  L+  +      +++L 
Sbjct: 73  ARSLARILSGVRHFYRFLVLDGYLEADPTELLESPKQPQHLPEVLSTAEV-----DIILQ 127

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           +   +KW   RN AI+ +L+ CGLR+SE  +L   N+  D   +R+ GKG K R+VP+ P
Sbjct: 128 SIDLSKWEGQRNKAIIEMLFSCGLRVSELTNLKLSNLYLDDLYIRVMGKGSKERLVPISP 187

Query: 205 -SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
            +V +    + D     +    +  +F   RG  L   +    +++  +  G+  + + H
Sbjct: 188 RAVEELNYWFLDRNQMVIKEGEEDYVFLNRRGAHLTRTMILIMLKRYAKGAGIKKTISPH 247

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           TLRHSFAT LL  G DLRSIQ++LGH  + TT+IYT++++
Sbjct: 248 TLRHSFATALLEGGADLRSIQAMLGHESVVTTEIYTHIDT 287


>gi|94969888|ref|YP_591936.1| tyrosine recombinase XerD subunit [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551938|gb|ABF41862.1| tyrosine recombinase XerD subunit [Candidatus Koribacter versatilis
           Ellin345]
          Length = 313

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 160/303 (52%), Gaps = 14/303 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  L +E+GLS+L++ +Y  D +QF  FLA   + K ++   ++    ++R F+   
Sbjct: 12  RDFLDYLRVEKGLSRLSVSAYSKDMQQFAEFLA---KRKRSLDAAKR---QDVRDFLDSL 65

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL-TL 137
            + ++  R++ R LS  + F KYL   +       LN+ + ++   LP++L+  + L TL
Sbjct: 66  FSNQLDGRTVARKLSSSRQFYKYLLLDRRIEHDPTLNIESPRQWKVLPKSLSADEVLQTL 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                +  + E++ +  R+ A+L + Y   LR+SE + +  ++   D   + ++GKGDK 
Sbjct: 126 QGPPRVLDTKESQALALRDRAMLEVFYAGALRVSEMIGVRMEDAKLDLGYMMVRGKGDKE 185

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVPL  S   A+  Y +     L      P LF G   + L+     + +    +  G 
Sbjct: 186 RIVPLGQSALVAVKSYLESGREVLCAGKTSPILFVGKGCRKLSRQRVWQMVSAASQASGR 245

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S   H LRHS ATH++ NG DLR++Q+ILGH  +STTQIYT++      D + +++  
Sbjct: 246 HASP--HMLRHSCATHMVENGADLRTVQTILGHADISTTQIYTHL----ALDRLKQVHRT 299

Query: 317 THP 319
            HP
Sbjct: 300 FHP 302


>gi|291615189|ref|YP_003525346.1| tyrosine recombinase XerD [Sideroxydans lithotrophicus ES-1]
 gi|291585301|gb|ADE12959.1| tyrosine recombinase XerD [Sideroxydans lithotrophicus ES-1]
          Length = 303

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/279 (32%), Positives = 145/279 (51%), Gaps = 12/279 (4%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKI 83
           L +E GLS+ TL+SY  D  +F  +L     +K     ++  ++ +I+ F++   + +K 
Sbjct: 19  LWLEDGLSRNTLESYRRDLNKFTEWL-----QKQRGCGLQAATHADIQGFLAHLVSGEKA 73

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
              S  R++S +K   +YL ++   T    L +   K   SLP++L E+        +LL
Sbjct: 74  KATSTSRAISSLKRLFRYLLRQNKITADPTLQIATPKLPRSLPKSLTEEDV-----ELLL 128

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
           +       +  R+  +L +LY  GLR+SE + L+   +  D    R+ GKG K R+VPL 
Sbjct: 129 NAPDVDTPLGMRDRTMLEVLYASGLRVSELVGLSVAQVSLDMGVTRVMGKGSKERLVPLG 188

Query: 204 PSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
                 +  Y  +  P  L   +   LF   RG+ +   +F   I++  +  GL    + 
Sbjct: 189 EEALDWVKRYLAEARPALLAGQVADALFVTQRGEGMTRQMFWYLIKKHAKEGGLHKPLSP 248

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 249 HTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHV 287


>gi|259046879|ref|ZP_05737280.1| integrase/recombinase XerD [Granulicatella adiacens ATCC 49175]
 gi|259036502|gb|EEW37757.1| integrase/recombinase XerD [Granulicatella adiacens ATCC 49175]
          Length = 294

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/307 (31%), Positives = 158/307 (51%), Gaps = 17/307 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +KE   +L ++ ++ GLS  T+ SY  D  +F  FL    EE+  I+ ++ + +T +  F
Sbjct: 1   MKEIHYFLDSIAVQ-GLSDNTVSSYRRDLEKFSQFL----EEQKVIR-LQNVDHTTMVLF 54

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + K +  +    S  R +S +K F ++L + +I  +     +   K    LP+AL+  + 
Sbjct: 55  LQKLKKDEYAVSSTSRMISCLKKFFQFLIQERIIDKDPTQQIHPPKPKKQLPKALSIDEV 114

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
                N LL     T  +  R+ A+L LLY  G+R+SE +S+   ++  +   L+  GKG
Sbjct: 115 -----NRLLEVPDTTTVLGLRDKAMLELLYATGMRVSELISIELGDLHLELGFLQTIGKG 169

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRR 252
           +K RI+P+       I  Y +     L    +L   LF   RG P     F + ++++ +
Sbjct: 170 NKQRIIPIGQEATNWIQNYLEYARPALEDEKKLSNVLFLNHRGGPFTRQGFWKNLKKIVQ 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +    + HTLRHSFATH+L  G DLR +Q +LGH  +STTQIYT++ ++     M E
Sbjct: 230 TAMITKEVSPHTLRHSFATHILEAGADLRIVQELLGHSDISTTQIYTHITNER----MKE 285

Query: 313 IYDQTHP 319
           IY Q HP
Sbjct: 286 IYKQAHP 292


>gi|304396715|ref|ZP_07378595.1| tyrosine recombinase XerD [Pantoea sp. aB]
 gi|304355511|gb|EFM19878.1| tyrosine recombinase XerD [Pantoea sp. aB]
          Length = 297

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 156/303 (51%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L IER L++ TL SY  D +    +LA +   ++T+ ++  L   +++ F+++R
Sbjct: 8   EQFLDALWIERNLAQNTLSSYRQDLQTLTGWLAHH---QLTLLSVTPL---DLQQFLAER 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K+  +     +   K    LP+ L+E Q     
Sbjct: 62  LEGGYKATSSARLLSAMRRLFQYLYREKLRPDDPSALLSAPKLPQRLPKDLSEAQV---- 117

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL   +    ++ R+ A+L LLY  GLR+SE + LT  +I   Q  +R+ GKGDK R
Sbjct: 118 -ERLLQAPNIDIPLELRDKAMLELLYATGLRVSELIGLTLSDISLRQGVVRVIGKGDKER 176

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       + +Y +   P+ LN      +F   R + +    F   I+      G+ 
Sbjct: 177 LVPLGEEAVYWLEQYMEHGRPWLLNGQTLDVMFPSNRAQQMTRQTFWHRIKHYATLAGID 236

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H +RH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q
Sbjct: 237 SEKLSPHVMRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQ 292

Query: 317 THP 319
            HP
Sbjct: 293 HHP 295


>gi|293394605|ref|ZP_06638899.1| tyrosine recombinase XerD [Serratia odorifera DSM 4582]
 gi|291422914|gb|EFE96149.1| tyrosine recombinase XerD [Serratia odorifera DSM 4582]
          Length = 299

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 156/303 (51%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER L++ TL SY  D +  + +LA +  + +  + +      +++AF+++R
Sbjct: 10  EQFLDALWLERNLAENTLASYRLDLQALVNWLAQHNSDLLQAEAL------DLQAFLAER 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q     
Sbjct: 64  VEGGYKASSSARLLSAMRRLFQYLYREKMRADDPTALLASPKLPQRLPKDLSEAQI---- 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            + LL      + ++ R+ A+L +LY  GLR+SE + L+  ++   Q  +R+ GKG+K R
Sbjct: 120 -DALLQAPCVDQPLELRDKAMLEVLYATGLRVSELVGLSISDVSLRQGVVRVIGKGNKER 178

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       I  Y +   P+ +N      LF   R + +    F   I+      G+ 
Sbjct: 179 LVPLGEEAVYWIENYLEHGRPWLVNGQTIDVLFPSQRCQQMTRQTFWHRIKHYAILAGID 238

Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q
Sbjct: 239 SERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQQ 294

Query: 317 THP 319
            HP
Sbjct: 295 HHP 297


>gi|89257003|ref|YP_514365.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115315363|ref|YP_764086.1| site specific recombinase XerD [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156503203|ref|YP_001429268.1| tyrosine recombinase XerD/ phage integrase family protein
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|167009383|ref|ZP_02274314.1| tyrosine recombinase XerD [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254368256|ref|ZP_04984276.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           257]
 gi|254369853|ref|ZP_04985863.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|290954477|ref|ZP_06559098.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295312082|ref|ZP_06802895.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|89144834|emb|CAJ80173.1| Integrase/recombinase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115130262|gb|ABI83449.1| site specific recombinase XerD [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134254066|gb|EBA53160.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           257]
 gi|156253806|gb|ABU62312.1| tyrosine recombinase XerD/ phage integrase family protein
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|157122812|gb|EDO66941.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           FSC022]
          Length = 292

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/300 (31%), Positives = 146/300 (48%), Gaps = 18/300 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L NL +E GLS+ T+ SY  D    L FL  Y  +   I     L + ++ AFIS R  
Sbjct: 8   FLDNLWLEHGLSQNTISSYRTD----LKFLQNYFAKTDLIS----LDFEQLYAFISYRSK 59

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                 S  R +S ++ F  +L     T  +    +   K +  LP+ + E         
Sbjct: 60  NGYSSHSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDV-----E 114

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL     T+ +  R+ A+L L+Y  GLR+SE + L   +I  +   +++ GKG K RIV
Sbjct: 115 RLLQAPDMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDININIGVIQVMGKGSKERIV 174

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+     + + +Y+      L+ N  +  +F     K +    F   I+      G+   
Sbjct: 175 PIGEYALEYLQKYFAEARTSLSKNFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTD 234

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLRS+Q +LGH  +STT IYT+++       + EIY + HP
Sbjct: 235 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR----LQEIYQKHHP 290


>gi|313199950|ref|YP_004038608.1| tyrosine recombinase xerc [Methylovorus sp. MP688]
 gi|312439266|gb|ADQ83372.1| tyrosine recombinase XerC [Methylovorus sp. MP688]
          Length = 298

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/297 (30%), Positives = 154/297 (51%), Gaps = 19/297 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L  ER LS LT ++Y+ D +   + L    E  +     + ++ T IR  ++    
Sbjct: 8   YLDHLSHERRLSPLTRENYQRDLK---VLLELNGEVPL-----QNMTGTHIRRHVATLHG 59

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +G RS+ R LS  + F ++L +R   + +    +R  K   SLP AL+  QA+ LV  
Sbjct: 60  RNLGGRSIARMLSAWRGFFEFLIQRHGFSANPCQGIRAPKSPKSLPHALSPDQAVQLV-- 117

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
               +  +   +  R+ A+L L Y  GLR++E ++L    +   + T+ + GKG+K RIV
Sbjct: 118 ----SIDDEDTLAQRDHAMLELFYSSGLRLAELVNLNLDALNLGEGTITVTGKGNKTRIV 173

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+      A L+ +      L +     LF    GK L+    Q  ++Q     G+ +  
Sbjct: 174 PVGQHAMNA-LQAWLAIRSGLPIQDTSALFLSRLGKRLSRRAVQYRLQQWAIRQGINIRV 232

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
             H LRHSFA+H+L + GDLR++Q +LGH  +STTQ+YT+++  +    + ++YD T
Sbjct: 233 HPHMLRHSFASHVLQSSGDLRAVQEMLGHANISTTQVYTHLDFHH----LAKVYDST 285


>gi|116492850|ref|YP_804585.1| tyrosine recombinase XerD subunit [Pediococcus pentosaceus ATCC
           25745]
 gi|116103000|gb|ABJ68143.1| tyrosine recombinase XerD subunit [Pediococcus pentosaceus ATCC
           25745]
          Length = 295

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 158/305 (51%), Gaps = 23/305 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L +L++ERGLS  T+ SY  + R    +L   T+EKIT   I+++    I  ++ + +
Sbjct: 7   DYLHSLKVERGLSDNTIISYRQELRHLNDYL---TKEKIT--DIKKIDRYAILDYLDELK 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  S   ++S ++ F KYL          ++N+   K+++ LP  L   +      
Sbjct: 62  KTGRARSSSIHTISSLRKFFKYLLIVDKIDVDPMVNIDPPKRAHHLPSVLTTAEV----- 116

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL   +  + +  R+  IL ++Y  GLR+SE ++L    +  +   +   GKG+K RI
Sbjct: 117 EKLLQVPNTNEPLGMRDRTILEVMYATGLRVSELITLNLNELHLEMGLIETIGKGNKKRI 176

Query: 200 VPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYL 254
           +P+     K +  Y +    +   D   N    +F    G PL   G+++    Q+++  
Sbjct: 177 IPIGDVAIKWLNRYINGPRRILLGDKKYN---EIFLNQHGHPLTRQGIWKNLKAQVKK-A 232

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+  + T HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT++  +     ++++Y
Sbjct: 233 GIEKNITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITQQR----LVDVY 288

Query: 315 DQTHP 319
           D+ HP
Sbjct: 289 DKYHP 293


>gi|288800351|ref|ZP_06405809.1| integrase/recombinase XerD [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332564|gb|EFC71044.1| integrase/recombinase XerD [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 311

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 165/311 (53%), Gaps = 18/311 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L+ L++ER  S  T+++Y+ D    + +      + + +Q    ++  E  AFI   
Sbjct: 13  RSYLRYLKLERNYSINTIEAYKNDLEHLITYCQENNRDVLKMQ----IADFEHFAFILHE 68

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R  KIG  S  R LSG++SF +YL    I  ++    + +      LP  L+ ++   L 
Sbjct: 69  R--KIGASSQARILSGVRSFYRYLVIDGILEDNPTELLESPILGEHLPEVLSTEEVDQLQ 126

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +++ L     +KW   RN AI+ +L+ CGLR+SE ++L   NI   +  +R+ GKG K R
Sbjct: 127 NSIDL-----SKWEGHRNRAIIEILFSCGLRVSELINLKLSNIYIIERYIRVIGKGSKER 181

Query: 199 IVPLLPSVRKAILE----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           ++P+     KA+ E    + D    ++    Q  +F   RG  L   +    I++     
Sbjct: 182 LIPI---SDKALYELELWFRDRNIMNIKPGEQDYVFLNRRGAHLTRTMILIMIKKQAELA 238

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+  + + HTLRHSFAT LL  G DL +IQ++LGH  +STT+IYT+++ ++    ++E +
Sbjct: 239 GIKKTISPHTLRHSFATELLRGGADLIAIQAMLGHESVSTTEIYTHIDRESLRKAIIEHH 298

Query: 315 DQTHPSITQKD 325
            +  P  T+++
Sbjct: 299 PRNKPKYTKEN 309


>gi|260910520|ref|ZP_05917188.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635362|gb|EEX53384.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 304

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 153/286 (53%), Gaps = 12/286 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +++ L++ER LS+ T+++Y  D R  L ++ ++    + ++ ++     ++  F +    
Sbjct: 15  YMRYLKLERNLSQNTIEAYRNDLRWLLAYVNYHG---LKVEAVK---LEDLDNFSASLHD 68

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q+I  RS  R LSG++SF K+L             + +    N+LP  L+  +   L  +
Sbjct: 69  QRITPRSQARILSGVRSFFKFLLLDGFIDADPTELLVSPHVRNALPDVLSTAEVDRLEAS 128

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           + L     +KW   RN AI+ +L+ CGLR+SE ++L   N+  ++  +R+ GKGDK R+V
Sbjct: 129 IDL-----SKWEGQRNRAIIEVLFSCGLRVSELVNLKLSNLYVEEKFVRVTGKGDKERLV 183

Query: 201 PLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+       +  ++ D     +    +  +F   RG  L   +    I++     G+  +
Sbjct: 184 PISSRALDELNAWFADRNAMRIKPGEEDYVFLNRRGAHLTRTMILIMIKRQAVAAGITKT 243

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            + HTLRHSFAT LL  G DL +IQ+++GH  ++TT+IYT++++ +
Sbjct: 244 ISPHTLRHSFATALLEGGADLIAIQAMMGHEDIATTEIYTHIDTSS 289


>gi|294787035|ref|ZP_06752289.1| site-specific recombinase, phage integrase family [Parascardovia
           denticolens F0305]
 gi|315226683|ref|ZP_07868471.1| tyrosine recombinase XerC [Parascardovia denticolens DSM 10105]
 gi|294485868|gb|EFG33502.1| site-specific recombinase, phage integrase family [Parascardovia
           denticolens F0305]
 gi|315120815|gb|EFT83947.1| tyrosine recombinase XerC [Parascardovia denticolens DSM 10105]
          Length = 334

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 150/313 (47%), Gaps = 42/313 (13%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L+  +GLS  +L++YE D  Q L FL  +   +  IQ+I   +   +R ++S   ++K+ 
Sbjct: 14  LKDSKGLSPQSLKAYESDVDQCLHFLCLHG--RTDIQSI---NTDYLRMWMSYE-SRKVA 67

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--- 141
             SL R +  ++ F  YL   K+   +    +   K   +LP  L +KQA+ L+D     
Sbjct: 68  KSSLARKIVAVRGFFAYLYTHKLIPSNPARPLGTPKLPKTLPAVLTQKQAVRLMDQAEEV 127

Query: 142 --------------------LLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQN 180
                               L     E K  +D R+ AI+ +LY  G+R++E +SL   +
Sbjct: 128 CERDRDGQADRAETGKAKAELSKAEAEKKTLLDMRDDAIMEVLYATGIRVAELVSLDVDD 187

Query: 181 IMDDQSTLRIQGKGDKIRIVPL-LPSV----------RKAILEYYDLCPFDLNLNIQLPL 229
           I     T+++ GKG+K R+VP   P+           R  +L+         +   +  +
Sbjct: 188 IDFTTRTVKVTGKGNKQRVVPFGKPAAEALDRWIRQGRDGLLDQAAPSAAQGSAADRSAV 247

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F G RGK +N    +  + +L R  G+P   + H LRHS ATHLL  G DLR +Q +LGH
Sbjct: 248 FVGSRGKRINQRQVREVVHRLAREAGVP-DISPHALRHSAATHLLDGGADLREVQEMLGH 306

Query: 290 FRLSTTQIYTNVN 302
             L TTQ YT+V+
Sbjct: 307 SSLQTTQRYTHVS 319


>gi|193212286|ref|YP_001998239.1| tyrosine recombinase XerD [Chlorobaculum parvum NCIB 8327]
 gi|193085763|gb|ACF11039.1| tyrosine recombinase XerD [Chlorobaculum parvum NCIB 8327]
          Length = 304

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/302 (31%), Positives = 150/302 (49%), Gaps = 17/302 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAF--YTEEKITIQTIRQLSYTEIRAFISKR 78
           +L  L IER  S  T +SY  D  ++L  L       E+ T   IRQ        FI + 
Sbjct: 15  FLNYLTIERNFSGNTRESYLNDLGRYLAHLQGQQVKPEEATPDHIRQ--------FIEEL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +   S+ R++S I+S+ K+L   +I   +   N+   K + +LP  L  ++ + L+
Sbjct: 67  HDIGLEASSVARNISAIRSYHKFLLAERIAQANPAENIHQPKLARTLPSVLTVEEMMALL 126

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +  L    H       R+ A+L LLY  G+R+SE + L   N+  D+  +R+ GKG K R
Sbjct: 127 EAPL--RRHPPGSFMLRDKAMLELLYATGIRVSELIGLGKLNLYLDEGFIRVFGKGSKER 184

Query: 199 IVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+  +  K +  Y + L P  ++   +  LF   RG  L+       +RQ     G+ 
Sbjct: 185 LVPVGRNATKWLKRYLEELRPGMVSATSKDVLFLNSRGGKLSRMSAWNIVRQHAIIAGIE 244

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + HT RHSFATHLL  G DLR++Q +LGH  +  TQIYT+++      ++ E++   
Sbjct: 245 KPISPHTFRHSFATHLLEGGADLRAVQEMLGHSSIIATQIYTHIDR----SFVKEVHRTF 300

Query: 318 HP 319
           HP
Sbjct: 301 HP 302


>gi|329962342|ref|ZP_08300347.1| tyrosine recombinase XerD [Bacteroides fluxus YIT 12057]
 gi|328530203|gb|EGF57084.1| tyrosine recombinase XerD [Bacteroides fluxus YIT 12057]
          Length = 317

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/282 (31%), Positives = 143/282 (50%), Gaps = 13/282 (4%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           Q L++E+ LS  TL +Y  D  + L FL     EKI I  +   +  +++ F +      
Sbjct: 22  QYLKLEKSLSPNTLDAYRTDLEKLLRFLE---AEKIDILAV---TLDDLQRFTAGLHDIG 75

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           I  RS  R LSGIKSF  +L             +   K    LP  L  ++   ++  V 
Sbjct: 76  IHPRSQARILSGIKSFFHFLVLADYLEGDPSELLEGPKIGFKLPEVLTVEEIDKIISTVD 135

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
           L T+        RN AIL  LY CGLR+SE  +L   ++  D+  ++++GKG K R+VP+
Sbjct: 136 LSTNE-----GQRNRAILETLYSCGLRVSELCNLKISDLYFDEGFIKVEGKGSKQRLVPI 190

Query: 203 LPSVRKAILEYYDL--CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
            P   K I  ++      + +  + +  +F    G  ++  +    I++L    G+  + 
Sbjct: 191 SPRAIKEIKNWFADRNEKWKIKKDFEDYVFLARWGNGISRIMIFHLIKELAEKAGITKNI 250

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++
Sbjct: 251 SPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHID 292


>gi|262091726|gb|ACY25315.1| tyrosine recombinase XerD [uncultured actinobacterium]
          Length = 311

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 159/314 (50%), Gaps = 34/314 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + IE+G S  T+++Y  D  ++  FL   + + +++Q+        I  FI+  
Sbjct: 8   ERFLTWMTIEQGRSPRTIEAYRRDLHRYEAFLVLKSCDVLSVQS------PVIEQFIASL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ----- 133
           R +    +S+ R  + ++   +YL + ++  ++    +  +K  + +P+AL+E +     
Sbjct: 62  RAEGKAAKSVARMYAAVRMMHRYLIEERLRPDNPTSGVDGVKVPSGIPKALSEDEVARIL 121

Query: 134 -ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
            ++T VD+  L           R+ A+L  LY  G RISEA  L+  ++  +   +R+ G
Sbjct: 122 ASVTGVDSFAL-----------RDRALLEFLYATGARISEACGLSLSDLDMESQLVRLFG 170

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-------LFRGIRGKPLNPGVFQR 245
           KG K RIVP     + A+ E+       + ++ Q         +F G RG  L+     R
Sbjct: 171 KGSKERIVPFGSHAKAALEEWLGAGGRTMLVSEQWAKRDHADAVFLGSRGTRLSRQAAWR 230

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +++  +   +    + H LRHS ATH+L +G DLR +Q +LGH  +STTQ+YT V+++ 
Sbjct: 231 IVQKFAQIAEVGDEVSPHVLRHSCATHMLIHGADLRIVQELLGHASVSTTQVYTRVDNEV 290

Query: 306 GGDWMMEIYDQTHP 319
               + ++Y ++HP
Sbjct: 291 ----LFDMYKESHP 300


>gi|294102004|ref|YP_003553862.1| integrase family protein [Aminobacterium colombiense DSM 12261]
 gi|293616984|gb|ADE57138.1| integrase family protein [Aminobacterium colombiense DSM 12261]
          Length = 294

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/316 (31%), Positives = 161/316 (50%), Gaps = 29/316 (9%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +V FE  +   ++L  L +ERG S+ T+ +Y  D + +L F               Q +Y
Sbjct: 1   MVKFEYDQLLDDFLDYLFLERGCSENTILAYNRDIKAWLDF----------CDKNDQPAY 50

Query: 69  TEIRAFISK--RRTQKIGDR--SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
              + ++ +  R   + G +  S +R+++ ++S+L+YL   K+  E   L    LK  +S
Sbjct: 51  PPNQTYLERYQRSLHEEGKKRSSQQRAIASLRSWLRYLDSEKLVEEEVTLPTLPLK-GDS 109

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  LNE +    V+ +    S  + ++  R+ AIL   YGCGLR SE  ++  ++I   
Sbjct: 110 LPHILNEGE----VERIFEACSGNS-FLALRDRAILETAYGCGLRASELCTICLRDIDFS 164

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
             TLRI GKG K RI+P L  V + +  Y +    D ++     LF    G PL      
Sbjct: 165 GRTLRIFGKGGKERIIPFLGEVSRRVGFYMEKARPDAHVQ---ELFISKTGNPLRREDIW 221

Query: 245 RYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           R +++     G+  S    H LRHSFATHLL  G DLR++Q +LGH  ++TT+ Y + + 
Sbjct: 222 RIVKKRGAAAGISSSRLFPHILRHSFATHLLRRGMDLRTLQELLGHATIATTEKYVHFDL 281

Query: 304 KNGGDWMMEIYDQTHP 319
           +     + +IYD+THP
Sbjct: 282 E-----LRDIYDKTHP 292


>gi|145634691|ref|ZP_01790400.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittAA]
 gi|145268236|gb|EDK08231.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittAA]
          Length = 297

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/295 (30%), Positives = 153/295 (51%), Gaps = 17/295 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           IE+GLS+ T+QSY  D      +L    +  ++++T   L   +++ F+ +R  +     
Sbjct: 16  IEKGLSENTVQSYRLDLTALCDWL---DKNDLSLET---LDAVDLQGFLGERLEKGYKAT 69

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R LS ++   +YL + K   +     + + K  + LP+ L E+Q      + LL+T 
Sbjct: 70  STARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQV-----SDLLNTP 124

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG+K RIVP+    
Sbjct: 125 DVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184

Query: 207 RKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHT 264
              + ++     P  LN      +F   R + +    F   ++       +   T + H 
Sbjct: 185 AYWVRQFMLYGRPVLLNRQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADTLSPHV 244

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++++ HP
Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER----LKRLHERFHP 295


>gi|330447418|ref|ZP_08311067.1| tyrosine recombinase XerD [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491609|dbj|GAA05564.1| tyrosine recombinase XerD [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 298

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 152/303 (50%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + +ERGLS+ TL SY  D  + L +L   +   I +      S  +++ +    
Sbjct: 9   ERFLDAMWMERGLSENTLASYRNDLMKLLNWLKQESRNVINV------SVDDLQRYQQWL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S  R +S I+   +YL + K+  +     +   K    LP+ L+E Q   L+
Sbjct: 63  FDKDYKQTSRARMVSAIRRLFQYLHREKMRDDDPSAMLVTPKLPKRLPKDLSEAQVDALL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D   ++       I+ R+ A+L LLY  GLR++E ++LT +NI   Q  +RI GKGDK R
Sbjct: 123 DAPDVNDP-----IELRDKAMLELLYATGLRVTELVTLTMENISLRQGVVRITGKGDKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+  +    I ++ +   P  L       LF   R + +    F   I+      G+ 
Sbjct: 178 LVPMGENAIDWIEQFIETGRPQLLGEKSSDVLFPSRRARQMTRQTFWHRIKHYAVLAGID 237

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             T + H +RH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +++  
Sbjct: 238 AETLSPHVMRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQT 293

Query: 317 THP 319
            HP
Sbjct: 294 HHP 296


>gi|78484754|ref|YP_390679.1| Phage integrase [Thiomicrospira crunogena XCL-2]
 gi|78363040|gb|ABB41005.1| tyrosine recombinase XerC subunit [Thiomicrospira crunogena XCL-2]
          Length = 317

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 164/328 (50%), Gaps = 30/328 (9%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIF-LAFYTEEKITIQTIRQ-------- 65
           + + Q +++ L++E   S+ T+ +Y+ D    L+F L  Y E+ +  + ++         
Sbjct: 1   MSDYQRFIKQLKLENK-SEHTISNYQRDLMGLLVFYLGDYLEQPLDEKALKSDQAWAFLD 59

Query: 66  -------LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
                  +    ++AFI+ R  Q I  RS+ R LS I++F  +L ++     +    ++ 
Sbjct: 60  QFDDWQAIKLPVLQAFIAFRMQQGIAARSIARQLSAIRAFYAFLIEQGRANHNPAKGLKA 119

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            K+  +LP++L+      L++  L        W D R+ AI  +LY  GLR+SE + L  
Sbjct: 120 PKQPKALPKSLDVDLTRQLLEQPL------KTWQDVRDQAIFEILYSGGLRVSELVELDL 173

Query: 179 QNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
              +D  ++  +R+ GKG K R  P+    +KA+  + ++   D     +  +F    GK
Sbjct: 174 SPGLDGLASGWVRVLGKGQKERDAPVGQPAQKALHRWLEIRS-DYAQPGEQAVFVNRFGK 232

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L     Q  + +     GLP   + H LRH+ ATH+L + GDLR++Q +LGH  LSTTQ
Sbjct: 233 RLGVRSIQTQLDKRTLQAGLPTKMSPHRLRHACATHVLESSGDLRAVQEMLGHANLSTTQ 292

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           IYT ++ ++    +  +YD+ HP   +K
Sbjct: 293 IYTKLDLQH----LATVYDKAHPRAKKK 316


>gi|319442272|ref|ZP_07991428.1| integrase/recombinase [Corynebacterium variabile DSM 44702]
          Length = 312

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/321 (31%), Positives = 155/321 (48%), Gaps = 38/321 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           R++W ++L  ERGLS  TL++Y  D  ++L +L     E +T+ T    +  +I  FI+ 
Sbjct: 9   RRDWFRHLRTERGLSSNTLENYGRDADRYLTWL---EGEGLTVATA---TVADIERFITD 62

Query: 78  RRT--QKIGDR-----SLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRAL 129
            R   +  G R     S  RSLS ++S   +  + R I   ++ + +   ++   LP+AL
Sbjct: 63  LRKGHEVTGGRPLAQTSAARSLSTVRSLHAFAARDRGIPDAADAVPV--TQQRADLPKAL 120

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              Q   L++ V +    + + +D R+ A++ LLY  G RISE L L   +I   Q T+ 
Sbjct: 121 TIDQVTALIEAVPV--GEDARPLDLRDRALVELLYSTGARISEVLDLNVDDIDRTQDTVL 178

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           ++GKGD  R+VP+      A+  Y  L      L  +     G  G  L         R+
Sbjct: 179 LRGKGDHERVVPVGTPALAAVDAY--LVRARPTLAARGSGRAGSDGAAL---FLTASGRR 233

Query: 250 LRRYLGLPLSTTA-----------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +RR  G  +   A           H LRHSFATHLL+ G D+R +Q +LGH  + TTQIY
Sbjct: 234 MRRQSGFNVVAAAGEKAGLGKVSPHALRHSFATHLLAGGADIRVVQELLGHSHVVTTQIY 293

Query: 299 TNVNSKNGGDWMMEIYDQTHP 319
             V      D + E +  +HP
Sbjct: 294 AKVTP----DLLRESWALSHP 310


>gi|262273209|ref|ZP_06051025.1| tyrosine recombinase XerC [Grimontia hollisae CIP 101886]
 gi|262222787|gb|EEY74096.1| tyrosine recombinase XerC [Grimontia hollisae CIP 101886]
          Length = 305

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 151/301 (50%), Gaps = 34/301 (11%)

Query: 28  ERGLSKLTLQSYE---CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           ERGLS+ T  +Y        +FL+       + +    +RQ++        +KR   K G
Sbjct: 21  ERGLSRHTETNYRQQLAACAEFLVGAGVSQWQDVDAAWVRQIAAQ------AKREQLKAG 74

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +L+  LS ++SF  ++    +   +    +   K+  +LP+ L+  +      N LL 
Sbjct: 75  SIALR--LSALRSFFDFMVADGVMAANPAKGVSAPKQGRTLPKNLDVDEV-----NQLLS 127

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
              +   +  R+ A++ L+YG GLR+SE + L  +++   +  LR+ GKGDK RIVP   
Sbjct: 128 VDADDP-LSVRDRAMMELMYGAGLRLSELIGLNVRDVAMRKGDLRVIGKGDKERIVPFTG 186

Query: 205 SVRKAILEYYDLCPFDLNLNIQL------PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
             ++ ++ +       L +  QL       LF    GK ++P   Q+ + +  +   +  
Sbjct: 187 MAKEWLINW-------LKVRNQLLKGPEDALFLSKLGKRISPRSVQKRMAEWGQKQAVSS 239

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRHSFATH+L + GDLR++Q +LGH  LSTTQ+YT+++ ++    + ++YD  H
Sbjct: 240 HINPHKLRHSFATHMLESSGDLRAVQELLGHADLSTTQVYTHLDFQH----LAKVYDAAH 295

Query: 319 P 319
           P
Sbjct: 296 P 296


>gi|304382767|ref|ZP_07365251.1| tyrosine recombinase XerD [Prevotella marshii DSM 16973]
 gi|304336086|gb|EFM02332.1| tyrosine recombinase XerD [Prevotella marshii DSM 16973]
          Length = 315

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 154/284 (54%), Gaps = 12/284 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L+++R  S  TL++Y  D  + L++L    +E +T   ++      ++ F ++   
Sbjct: 15  YLRYLKLQRNYSGNTLEAYRRDLNRLLVYLK---QEGLTPTEVK---LEHLQHFSAQLYD 68

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             IG RS  R LSG++SF ++L+            + + +    LP  L+ ++   L ++
Sbjct: 69  CGIGARSQARVLSGVRSFYRFLQLDGYMESDPSELLESPQIGTHLPEVLSTEEVDRLENS 128

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           + L     +K    RN AI+ +L+ CGLR++E +SL   N+  D+  +R+ GKG K R V
Sbjct: 129 LDL-----SKPEGQRNRAIIEVLFSCGLRVTELVSLRLSNLYLDEGFIRVLGKGRKERFV 183

Query: 201 PLLP-SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+ P ++++  L +YD     +    +  +F   RG  L   +    I++     G+  +
Sbjct: 184 PISPRAIKELKLWFYDRNELKIRAGEEDYVFLNRRGVHLTRTMILIMIKRQATEAGIQKT 243

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            + HTLRHSFAT LL  G DLR+IQ +LGH  +STT+IYT++++
Sbjct: 244 ISPHTLRHSFATALLEGGADLRAIQVMLGHESISTTEIYTHIDT 287


>gi|284035039|ref|YP_003384969.1| integrase family protein [Spirosoma linguale DSM 74]
 gi|283814332|gb|ADB36170.1| integrase family protein [Spirosoma linguale DSM 74]
          Length = 298

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 153/302 (50%), Gaps = 13/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q++L ++  E+ LS  TL +Y  D  QF  FL      +  I    +  +  +R++I   
Sbjct: 5   QDFLAHIRYEKRLSHHTLTAYANDLEQFCTFLL----AECNIDQPERADFRHVRSWIVSL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +   S+ R ++ +++F  +L +RK+     +  ++ LK S  LP+ + EK    L+
Sbjct: 61  VESGMDKSSVNRKIATLRNFFGFLLRRKVIDFDPMSKIQALKASKRLPQYVEEKPMEMLL 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D++    + E      R+  +L LLYG G+R+SE   L   ++   + T+ + GK +K R
Sbjct: 121 DDIEFPDTFE----GLRDKLVLELLYGTGIRLSELTGLKTTDVNLYEKTIVVLGKRNKHR 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           IVPL   + + I +Y  L   + +       L    +G    P + QR +++    +   
Sbjct: 177 IVPLNQPLFELIQQYNLLKEKEFSGQADTAHLIVSDKGVAAYPVLIQRIVKRHLTLVTTL 236

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + + H LRH+FATHLL+ G DL +I+ +LGH  L+ TQIYT+ +     D + + YDQ 
Sbjct: 237 GTKSPHVLRHTFATHLLNRGADLNAIKDLLGHSSLAATQIYTHTSL----DQLKKTYDQA 292

Query: 318 HP 319
           HP
Sbjct: 293 HP 294


>gi|297183673|gb|ADI19798.1| site-specific recombinase xerd [uncultured alpha proteobacterium
           EB000_37G09]
          Length = 302

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/310 (30%), Positives = 151/310 (48%), Gaps = 20/310 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L  ERG+S+ TL  Y+ D       +A +    ++      ++  +IR  + K  
Sbjct: 12  HFLSALAAERGVSENTLFGYKND------LMALHDSMAVSFVV---MTADDIRQSVQKFY 62

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +  R++ R LS ++ F  ++    I  ++  L + N K  + LP++LNE      V 
Sbjct: 63  IEGLAARTVSRRLSAVRQFAGWMVSDHIRQDNPSLFLDNPKLPDPLPKSLNEAD----VS 118

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           +++   S      D    A L L+Y  GLRISE LSL  Q+   D+  L I+GKG + R+
Sbjct: 119 SLITACSKLEPPYDLLMQAGLELMYSAGLRISELLSLRLQDFTADKDMLLIRGKGGRERM 178

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PL 258
           VPL          + D    D   + +     G R + +    F   ++Q+ R+  L   
Sbjct: 179 VPLTAIAIATARRWRDARDAD-GPDAETDQLLGYRSQEMTRQKFSLLLKQVARHADLDER 237

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             +AH LRHSFATHLL+ G DLRS+Q +LGH  ++TTQIYT        D +  +    H
Sbjct: 238 KVSAHVLRHSFATHLLNRGADLRSLQMLLGHADIATTQIYTRTRQ----DRLAGLVSDAH 293

Query: 319 PSITQKDKKN 328
           P + + D+K 
Sbjct: 294 P-LAESDRKE 302


>gi|225351391|ref|ZP_03742414.1| hypothetical protein BIFPSEUDO_02985 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157735|gb|EEG71018.1| hypothetical protein BIFPSEUDO_02985 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 317

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 154/317 (48%), Gaps = 27/317 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L ++++ERGLSK T+ +Y  D +++  +LA        +  I  ++  ++  +I   
Sbjct: 9   RQFLAHIDVERGLSKATVSAYGADLKKYRQWLA-----DQGVGGIAAVTTQDVERYIVFL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  RS  R L+ I +  ++     I  +     ++  K  ++LP  L   +   L+
Sbjct: 64  DESGESSRSKARRLASIHALHRFAVNEHIVVDDVSAQVKAPKGVSTLPDVLTVDEVARLL 123

Query: 139 DNVLLHTSHETKWIDA---------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           D++ +  + E   + +         R+ A+L  +Y  G R+SEA      ++  D    R
Sbjct: 124 DSIPVSQNREHDGVVSEFPDDPVMLRDKALLEFMYAIGARVSEACGANLDDVDVDGRIAR 183

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQ 244
           + GKG K R+VP+     +AI+ Y       L    + P     LF   RGK L+     
Sbjct: 184 LMGKGSKQRLVPVGSYACEAIIRYLHAGRPKLESKSKGPVERRALFLNKRGKRLSRQSVW 243

Query: 245 RYIRQL--RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             IR    R ++  PL    HTLRHSFATHL+  G D+R++Q +LGH  ++TTQIYT+++
Sbjct: 244 EIIRGAGERAHIDKPLHP--HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHIS 301

Query: 303 SKNGGDWMMEIYDQTHP 319
            +N    ++E Y  +HP
Sbjct: 302 PEN----LIETYLMSHP 314


>gi|149920280|ref|ZP_01908751.1| integrase/recombinase XerD [Plesiocystis pacifica SIR-1]
 gi|149818867|gb|EDM78307.1| integrase/recombinase XerD [Plesiocystis pacifica SIR-1]
          Length = 302

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 153/304 (50%), Gaps = 18/304 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++LQ+L++ER LS  TL++Y  D R+ L  L+    E+ +     Q+S   +  F+   
Sbjct: 12  EDYLQHLKVERNLSPNTLEAYGNDLRRLLDALSGAGVERAS-----QVSPAALLGFLRSL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +  RS  R    ++   ++L+  ++        +   K  N LP  L+ ++ + L+
Sbjct: 67  AEAGLSARSQARRWVAVRGLFRWLRSEQLVEVDPTQGIALPKAVNKLPELLSREEVVRLI 126

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
               + T      +  R++A+L  +Y  G R+SEA  L   ++  DQ  + + GKG K R
Sbjct: 127 AAPGVDTP-----LGLRDTALLEFMYATGCRVSEACDLELSSLHLDQGLVVLTGKGSKQR 181

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLN-PGVFQRYIRQLRRYLG 255
           +VPL      A+L + +    +L      +  +F   RG  L+  G F R +RQ     G
Sbjct: 182 MVPLGDCALVALLAWLEEGRPELVARAPREAHVFVNKRGSRLSRQGCFFR-LRQHAVSAG 240

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + H LRHSFATHL+  G DLR++Q++LGH  +STTQ+YT+++  +    +   YD
Sbjct: 241 ITRDISPHKLRHSFATHLIEGGADLRAVQTLLGHADISTTQVYTHLSQSH----VRHAYD 296

Query: 316 QTHP 319
             HP
Sbjct: 297 LHHP 300


>gi|254780490|ref|YP_003064903.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040167|gb|ACT56963.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 67

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 64/71 (90%), Positives = 65/71 (91%), Gaps = 4/71 (5%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           +STTAHTLRHSFATHLLSNGGDLRSIQSILGH RLSTTQIYTNVNSK     MMEIYDQT
Sbjct: 1   MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR----MMEIYDQT 56

Query: 318 HPSITQKDKKN 328
           HPSITQKDKKN
Sbjct: 57  HPSITQKDKKN 67


>gi|91202903|emb|CAJ72542.1| similar to site-specific tyrosine recombinase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 298

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 147/299 (49%), Gaps = 19/299 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  +E +R  S  TL++Y  D  Q+L FL    E    +  + +L   +  AF+ K+  
Sbjct: 17  YLAYIENDRNYSPQTLRAYRNDLGQYLSFLK--GEGCTDLAGVTRLQLRKYLAFLKKKNP 74

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            K    ++ R L+ I+S  K+L +  I   + +  ++  K    LP  ++          
Sbjct: 75  SKT---TVARKLASIRSLYKFLCQHGILEYNPVEQIKTPKTDKKLPGFMSVNDT-----E 126

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +LL+          R+ AI+  LY  G+R+SE + +   +I      ++++GKG K RI+
Sbjct: 127 ILLNQPDTCNLSGLRDKAIMETLYSTGMRVSELVGINIADIDFHSGIVKVRGKGSKERIL 186

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+      AI  Y +    D N  + L  F G     L      R I +  +   + L  
Sbjct: 187 PVGNHALNAIQLYLEKRKAD-NEALFLNKFHG----RLTERSVARMIEKYMKKAAMHLRV 241

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           + HT RHSFATHLL NG DLR++Q  LGH  LSTTQIYT+V +    + + ++YD+THP
Sbjct: 242 SPHTFRHSFATHLLDNGADLRAVQEFLGHSSLSTTQIYTHVTT----ERLKQVYDKTHP 296


>gi|120403198|ref|YP_953027.1| site-specific tyrosine recombinase XerC [Mycobacterium vanbaalenii
           PYR-1]
 gi|119956016|gb|ABM13021.1| tyrosine recombinase XerC subunit [Mycobacterium vanbaalenii PYR-1]
          Length = 319

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 141/296 (47%), Gaps = 10/296 (3%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +ERG S+ T ++Y  D R    FLA    E+     +R L+   +R++++ + T    
Sbjct: 31  LALERGRSEHTRRAYLGDVRALFDFLA----ERRPGTGLRGLTLPVLRSWLAAQATAGAA 86

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +L R  S +K+F  +  +R + TE     ++  K   +LP  L + QA   +D     
Sbjct: 87  RSTLARRTSAVKTFTAWAVRRGLMTEDPAARLQVPKARRTLPSVLRQDQAREAMDAAK-S 145

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            + +   +  R+  I+ +LY  G+R+SE   L   ++   +  LR+ GKG+K R VP   
Sbjct: 146 GAQQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTARRLLRVLGKGNKQRTVPYGD 205

Query: 205 SVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
               A+  +  D  P  +       L  G RG  L+P   +  + Q    +        H
Sbjct: 206 PAHAALTAWLSDGRPALVTAGSGAALLLGARGGRLDPRQARTVVHQTMAAVSGAPDIGPH 265

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V        +  ++DQ HP
Sbjct: 266 GLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVTVAR----LRAVHDQAHP 317


>gi|238921200|ref|YP_002934715.1| tyrosine recombinase XerD, [Edwardsiella ictaluri 93-146]
 gi|238870769|gb|ACR70480.1| tyrosine recombinase XerD, putative [Edwardsiella ictaluri 93-146]
          Length = 299

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 157/303 (51%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +E+ L++ TL SY  D R    +LA +    +T+ T    ++ +++ F ++R
Sbjct: 10  EQFLDALWLEKNLAENTLASYRQDLRTLAEWLACH---DLTLLTA---AHGDLQDFFAQR 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL +  +  +     + + K    LP+ L+E Q    V
Sbjct: 64  MDGGYKASSSARLLSALRRCYQYLYRETLRGDDPSALLASPKLPQRLPKDLSEAQ----V 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D +L   S +T  ++ R+ A+L LLY  GLR+SE + L  ++I   Q  +R+ GKG+K R
Sbjct: 120 DALLQAPSIDTP-LELRDKAMLELLYATGLRVSELVGLAQEDISLRQGVVRVIGKGNKER 178

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       I  Y +   P+ +N      LF   R + +    F   I+      G+ 
Sbjct: 179 LVPLGEEAIYWIEYYLEYGRPWLVNGQTVAALFPSNRARQMTRQTFWHRIKHYAVLAGID 238

Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q
Sbjct: 239 GDRLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQ 294

Query: 317 THP 319
            HP
Sbjct: 295 HHP 297


>gi|310822341|ref|YP_003954699.1| Tyrosine recombinase XerC [Stigmatella aurantiaca DW4/3-1]
 gi|309395413|gb|ADO72872.1| Tyrosine recombinase XerC [Stigmatella aurantiaca DW4/3-1]
          Length = 300

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/302 (32%), Positives = 145/302 (48%), Gaps = 23/302 (7%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           +LE E+G S  T+++Y  D   F  +L    +  +   T     +  IR ++        
Sbjct: 14  HLEHEKGASPHTVRNYLIDLVDFEKYLVGTMKLSLLAGT-----HAAIRGYLGTLSVDH- 67

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
              S  R L+ IKSF KYL ++K+ + S    +++ K   SLP+ L   +   +++   L
Sbjct: 68  APASRGRRLASIKSFYKYLVRQKLLSASPAKLVKSPKLPKSLPKVLPVDEVFAILEMPSL 127

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL- 202
            T      +  R+ AIL +LYG GLRISE   L   ++      +R+ GKG K R+ P+ 
Sbjct: 128 KT-----VLGLRDRAILEILYGGGLRISELCGLNLLDVDRSGRIVRVMGKGGKERLCPVN 182

Query: 203 LPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
            PS+R   LE Y     +L            +F   RG  L P    R++        L 
Sbjct: 183 EPSIRA--LEAYLARRGELLATPHAGQDPEAMFLNYRGGRLTPRSIARHLDTYVVKCALT 240

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRHSFATHLL  G D+RSIQ +LGH  LSTTQ YT+V      + + ++YD  
Sbjct: 241 RKVSPHALRHSFATHLLGGGADVRSIQELLGHASLSTTQRYTHVTV----EQLQQVYDAA 296

Query: 318 HP 319
           HP
Sbjct: 297 HP 298


>gi|134301363|ref|YP_001121331.1| tyrosine recombinase/integrase XerD [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|187931093|ref|YP_001891077.1| tyrosine recombinase XerD [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|134049140|gb|ABO46211.1| tyrosine recombinase/integrase XerD [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|187712002|gb|ACD30299.1| tyrosine recombinase XerD [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 292

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/300 (31%), Positives = 146/300 (48%), Gaps = 18/300 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L NL +E GLS+ T+ SY  D    L FL  Y  +   I     L + ++ AFIS R  
Sbjct: 8   FLDNLWLEHGLSQNTISSYRTD----LKFLQNYFAKTDLIS----LDFEQLYAFISYRSK 59

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                 S  R +S ++ F  +L     T  +    +   K +  LP+ + E         
Sbjct: 60  NGYSSHSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDV-----E 114

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL     T+ +  R+ A+L L+Y  GLR+SE + L   +I  +   +++ GKG K RIV
Sbjct: 115 RLLQAPDMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIV 174

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+     + + +Y+      L+ N  +  +F     K +    F   I+      G+   
Sbjct: 175 PIGEYALEYLQKYFAEARRSLSKNFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTD 234

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLRS+Q +LGH  +STT IYT+++       + EIY + HP
Sbjct: 235 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR----LQEIYQKHHP 290


>gi|330444894|ref|ZP_08308549.1| tyrosine recombinase XerC [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489204|dbj|GAA03046.1| tyrosine recombinase XerC [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 297

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 154/302 (50%), Gaps = 16/302 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  ER LS  T Q+Y+   RQ         E  + +++ +Q+    +R   SK     + 
Sbjct: 12  LRSERELSLHTQQNYK---RQLTRIAEQLVE--LKVESWQQVDAGWVRQIASKGMRDGLK 66

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             SL   LS ++SF  +L  + +   +    +   +KS  LP+ L+  +   L+D     
Sbjct: 67  ASSLAMRLSALRSFFDFLVHQNVLKANPAKGVAAPRKSRPLPKNLDVDEMNQLLD----- 121

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
             +E   +  R+ A++ L+YG GLR+SE + +  +NI   +  LR+ GKGDK RIVP   
Sbjct: 122 -VNEDDPLAIRDRAMMELMYGAGLRLSELVGIDLRNISLSKGDLRVIGKGDKERIVPFSG 180

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             R+ + ++  L       + Q  LF    G  ++    Q+ + +  +   +      H 
Sbjct: 181 LAREWVAKWLKLRDSIAQADEQ-ALFVSKLGHRISTRNVQKRMAEWGQKQAVSSHINPHK 239

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++    + ++YD+ HP   ++
Sbjct: 240 LRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LAKVYDEAHPRAKKR 295

Query: 325 DK 326
           +K
Sbjct: 296 NK 297


>gi|295398591|ref|ZP_06808623.1| tyrosine recombinase XerD [Aerococcus viridans ATCC 11563]
 gi|294973192|gb|EFG48987.1| tyrosine recombinase XerD [Aerococcus viridans ATCC 11563]
          Length = 309

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 164/317 (51%), Gaps = 17/317 (5%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           + E VS +L +  +++L  + +E GL++ ++ SY+ +  + + +L     EK+  Q I Q
Sbjct: 5   IEERVSMKLTEVIEDFLNTMRVEEGLAENSIISYKQELNRMMTYLNRQGIEKV--QVISQ 62

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
            +  +   ++ +     +   +    +S ++ F +YLK   +  ++ +  +   KK+  L
Sbjct: 63  DTVLDHLKWMDE---DHLATSTRSHYVSTLRHFFRYLKLDGVIEDNPMEKISLPKKTQHL 119

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P  L     L  VD +L  T   TK +  R+  +L  LY  G+R+SE + +  ++I  D 
Sbjct: 120 PAVL----TLDEVDRILA-TPDITKPLGLRDRTLLETLYSTGMRVSEIIHIKLEDIHLDM 174

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGV 242
             ++  GKG K R+VP+       I +Y       L       Q  LF   RGKPL+   
Sbjct: 175 GFIQTIGKGGKERLVPIGEMAEDWINKYLTEGRPKLVKDEDETQGYLFVNNRGKPLSRQG 234

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             + ++++     +    + HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT+++
Sbjct: 235 VWKNLKKMVMMAHITKDISPHTLRHSFATHLLENGADLRVVQELLGHSDISTTQIYTHIH 294

Query: 303 SKNGGDWMMEIYDQTHP 319
           +++    M +IY+Q HP
Sbjct: 295 AQH----MKDIYNQNHP 307


>gi|300781243|ref|ZP_07091097.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030]
 gi|300532950|gb|EFK54011.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030]
          Length = 298

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 146/301 (48%), Gaps = 16/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL +L +ERGLS  TL +Y  D  +++ +L     E      +  ++ +++  +++  R 
Sbjct: 10  WLDHLAVERGLSANTLSNYRRDVDRYVTWL-----ESAGKTDLNSVTASDLGDYVADLRR 64

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +   S  R+L   +   K+              +   K    LP  L+ ++   L+D 
Sbjct: 65  GGLAASSAGRALVVARGLHKFATVEGAVAADVAAGVSPPKTGEKLPDTLSIEEVGLLLDA 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIR 198
               T       D R+ A+L +LY  G R+SE L L   +++  +D + +++ GKG+K R
Sbjct: 125 CPTDTP-----ADLRDKALLEVLYATGARVSEVLGLVVDDVVGLEDGTFIKVTGKGNKQR 179

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVP+  + R A+  Y       L+      LF   RG  L+       I++     G+  
Sbjct: 180 IVPVGSAARDAVEAYLVRGRPALSKGKTHALFLNKRGGALSRQSAWTVIKEAAGRAGVDK 239

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HTLRHSFATHLL  G D+R++Q +LGH  ++TTQIYT+V  +N    + E++   H
Sbjct: 240 HISPHTLRHSFATHLLEGGADVRTVQELLGHASVTTTQIYTHVTPEN----LREVWRTAH 295

Query: 319 P 319
           P
Sbjct: 296 P 296


>gi|145636556|ref|ZP_01792224.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittHH]
 gi|145270381|gb|EDK10316.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittHH]
          Length = 297

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 155/298 (52%), Gaps = 23/298 (7%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           IE+GLS+ T+QSY  D      +L    +  ++++T   L   +++ F+ +R  +     
Sbjct: 16  IEKGLSENTVQSYRLDLTALCDWL---DKNDLSLET---LDAVDLQGFLGERLEKGYKAT 69

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R LS ++   +YL + K   +     + + K  + LP+ L E+Q      + LL+T 
Sbjct: 70  STARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQV-----SDLLNTP 124

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS- 205
                ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG+K RIVP+    
Sbjct: 125 DVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184

Query: 206 ---VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-T 261
              VR+ IL      P  LN      +F   R + +    F   ++       +   T +
Sbjct: 185 AYWVRQFILYGR---PVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADTLS 241

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++++ HP
Sbjct: 242 PHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER----LKRLHERFHP 295


>gi|319937629|ref|ZP_08012033.1| tyrosine recombinase xerC [Coprobacillus sp. 29_1]
 gi|319807271|gb|EFW03883.1| tyrosine recombinase xerC [Coprobacillus sp. 29_1]
          Length = 301

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 150/305 (49%), Gaps = 19/305 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L  L+ ++  S LT+  Y+ +   F+++L      K  I   + + Y  +R ++++ 
Sbjct: 9   QEYLDVLKYQKNYSSLTIDGYKREIEHFIVYL-----NKENICDFKDVRYPFLRGYLAQL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            ++ +  +++   +S ++   +YL+ +    ++  L + +LK+    P  L   + + L+
Sbjct: 64  HSENLSPKTINHKMSSLRGLYRYLQTQGYIDDNPFLLIDSLKQPLRNPDFLYIDEMMDLL 123

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D++   T      +  RN A+L L+Y  GLR SE + LT   I  ++  L I GKG+K R
Sbjct: 124 DSIDTQT-----LLGRRNKALLELMYASGLRCSEVVELTLSQIDFERQLLLIHGKGNKDR 178

Query: 199 IVPLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            VP        +  Y +    +L    +L  Q         K  N G+     R  +RY 
Sbjct: 179 YVPFHDYAADWLKTYIEEDRPELMAVKHLEHQFVFVNKNGAKMTNRGIEDIVNRVTQRYD 238

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
                   HT RHSFATHLL  G D+R +Q +LGH  LSTTQIYT+V +++    + E+Y
Sbjct: 239 ATK-KVHPHTFRHSFATHLLEQGVDIRVVQELLGHSNLSTTQIYTHVTNQH----LKEVY 293

Query: 315 DQTHP 319
           D  HP
Sbjct: 294 DHAHP 298


>gi|145637619|ref|ZP_01793275.1| tyrosine recombinase [Haemophilus influenzae PittHH]
 gi|145269216|gb|EDK09163.1| tyrosine recombinase [Haemophilus influenzae PittHH]
          Length = 325

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 154/306 (50%), Gaps = 25/306 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L IER +S  TL +Y+      +  LA     +  I +  Q++ + +R  +++ + Q + 
Sbjct: 12  LRIERQMSPHTLTNYQHQLDATIKILA-----QQDIHSWTQVTPSVVRFILAESKKQGLK 66

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           ++SL   LS ++ FL +L ++     +    +   K+   LP+ ++ +Q    V  +L +
Sbjct: 67  EKSLALRLSALRRFLSFLVQQGELKVNPTTGISAPKQGKHLPKNMDGEQ----VQQLLAN 122

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            S E   ID R+ AIL L+Y  GLR+SE   L   +I      +R+ GKG+K R+VP   
Sbjct: 123 DSKEP--IDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGR 180

Query: 205 SVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
               AI E+  +     P D        LF    G  ++    Q+ +       GL    
Sbjct: 181 YASHAIQEWLKVRALFNPKDE------ALFVSQLGNRISHRAIQKRLETWGIRQGLNSHL 234

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
             H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    + E+YDQ HP 
Sbjct: 235 NPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEVYDQAHPR 290

Query: 321 ITQKDK 326
             +K+K
Sbjct: 291 AKRKNK 296


>gi|110639767|ref|YP_679977.1| integrase [Cytophaga hutchinsonii ATCC 33406]
 gi|110282448|gb|ABG60634.1| integrase [Cytophaga hutchinsonii ATCC 33406]
          Length = 293

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 151/308 (49%), Gaps = 30/308 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L  E+  SK T  SY+ D      +L    E    + T    +Y  +R++I     
Sbjct: 5   FLTYLSFEKRYSKHTTVSYKNDLSNLSDYLLITYE----LSTPEHANYPMLRSWIVTLVD 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q++  +S+ R ++ ++S+  +L+K++  T+   L +R LK   SLP  + E+    L+D 
Sbjct: 61  QELEPKSINRKIACLRSYYHFLQKKEFITKDPTLKIRALKVKKSLPVFVAEENITDLLDK 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                S E      R+  +L LLYG G+R+SE + L   ++   Q T+++ GKG+K RI+
Sbjct: 121 FEFADSFE----GLRDKLVLELLYGTGIRLSELIGLKNADVNMFQKTIKVLGKGNKERII 176

Query: 201 PL---------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           P+           +++K    + +   F +  N          G+ + P    R +R   
Sbjct: 177 PIHDTFITLAKAYTIKKKSESFSNNTEFFVVTN---------NGEQVYPMFIYRLVRMYL 227

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             +      + H LRH+FATHLL+ G DL +I+ +LGH  L+ TQ+YT+    N  D + 
Sbjct: 228 DQVTTVDKRSPHVLRHTFATHLLNKGADLNAIKDLLGHTSLAATQVYTH----NSIDKLK 283

Query: 312 EIYDQTHP 319
            I+DQ HP
Sbjct: 284 AIFDQAHP 291


>gi|62258790|gb|AAX77820.1| unknown protein [synthetic construct]
          Length = 327

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/300 (31%), Positives = 146/300 (48%), Gaps = 18/300 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L NL +E GLS+ T+ SY  D    L FL  Y  +   I     L + ++ AFIS R  
Sbjct: 34  FLDNLWLEHGLSQNTISSYRTD----LKFLQNYFAKTDLIS----LDFEQLYAFISYRSK 85

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                 S  R +S ++ F  +L     T  +    +   K +  LP+ + E         
Sbjct: 86  NGYSSHSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDV-----E 140

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL     T+ +  R+ A+L L+Y  GLR+SE + L   +I  +   +++ GKG K RIV
Sbjct: 141 RLLQAPDMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIV 200

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+     + + +Y+      L+ N  +  +F     K +    F   I+      G+   
Sbjct: 201 PIGEYALEYLQKYFAEARRSLSENFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTD 260

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLRS+Q +LGH  +STT IYT+++       + EIY + HP
Sbjct: 261 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR----LQEIYQKHHP 316


>gi|258616485|ref|ZP_05714255.1| phage integrase family site specific recombinase [Enterococcus
           faecium DO]
          Length = 225

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/235 (35%), Positives = 126/235 (53%), Gaps = 20/235 (8%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNEKQALTLVDNVLLHTSHETK 150
           ++ ++SF +YL K ++  E N  +  +LKK N  LPR   E +   L D+V   +     
Sbjct: 2   IASLRSFYQYLLKEEVIKE-NPFSYVHLKKKNLRLPRFFYENEMQALFDSVAGDSP---- 56

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
            +D RN A+L +LYG G+R+SE  SL+  +I  D   + I GKG+K R  PL    + A+
Sbjct: 57  -LDLRNRALLEVLYGSGIRLSECSSLSVSDIDFDSEVMLIHGKGNKERYAPLGSFAQDAL 115

Query: 211 LEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            EY+       +  +    +I   +F    GKP+ P   +  + Q+ +   L      H 
Sbjct: 116 QEYFREGRQVLMTKYHEEHDI---VFVNHHGKPITPTGIEYVLNQMIKKSSLDSDIHPHM 172

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           LRH+FATHLL+NG DLR++Q +LGH  LSTTQIY +V  ++    + + Y   HP
Sbjct: 173 LRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKES----LQKNYRSFHP 223


>gi|262091779|gb|ACY25367.1| site-specific recombinase XerD [uncultured actinobacterium]
          Length = 308

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 156/312 (50%), Gaps = 26/312 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L +L+IERGL+  ++ +Y  D  +F IFL          +++ ++    I  F    R
Sbjct: 14  SFLNHLQIERGLAANSIAAYRRDLVKFSIFLGS--------KSLSEVDSNAINDFEISLR 65

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
             K+   S+ R  S ++SF K+L++     +   L +   K +  LP+AL   Q ++++D
Sbjct: 66  EAKLSVASINRVDSTLRSFFKHLQQEYGYADPT-LEIAPQKSARRLPKALTISQIVSMID 124

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS-----LTPQNIMDDQ-STLRIQGK 193
                   E + I AR+ A+L LLY  G R+SE +      L+  +  D + +TL+++GK
Sbjct: 125 VAY----REGQPITARDQAMLELLYSSGARVSELIGINLNDLSSIDTSDGKVTTLKLRGK 180

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           G K RIVPL     KA+  Y      DL   +  +   LF   RG  ++     + +   
Sbjct: 181 GAKERIVPLGSFATKAVENYLVRVRPDLASKSSKVTSALFLNSRGSRISRQSAWQMVLDA 240

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+    + H  RHS+ATHLL+ G D+R +Q +LGH  ++TTQIYT +      D +
Sbjct: 241 ADAAGITEHVSPHVFRHSYATHLLNGGADIRVVQELLGHASVTTTQIYTLITI----DKV 296

Query: 311 MEIYDQTHPSIT 322
            E Y  THP  T
Sbjct: 297 RESYALTHPRAT 308


>gi|56707324|ref|YP_169220.1| integrase/recombinase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110669794|ref|YP_666351.1| integrase/recombinase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|224456388|ref|ZP_03664861.1| integrase/recombinase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370002|ref|ZP_04986009.1| site-specific recombinase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874160|ref|ZP_05246870.1| integrase/recombinase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|54114539|gb|AAV29903.1| NT02FT0289 [synthetic construct]
 gi|56603816|emb|CAG44787.1| Integrase/recombinase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110320127|emb|CAL08170.1| Integrase/recombinase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151568247|gb|EDN33901.1| site-specific recombinase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254840159|gb|EET18595.1| integrase/recombinase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158450|gb|ADA77841.1| Integrase/recombinase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 292

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/300 (31%), Positives = 146/300 (48%), Gaps = 18/300 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L NL +E GLS+ T+ SY  D    L FL  Y  +   I     L + ++ AFIS R  
Sbjct: 8   FLDNLWLEHGLSQNTISSYRTD----LKFLQNYFAKTDLIS----LDFEQLYAFISYRSK 59

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                 S  R +S ++ F  +L     T  +    +   K +  LP+ + E         
Sbjct: 60  NGYSSHSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDV-----E 114

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL     T+ +  R+ A+L L+Y  GLR+SE + L   +I  +   +++ GKG K RIV
Sbjct: 115 RLLQAPDMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIV 174

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+     + + +Y+      L+ N  +  +F     K +    F   I+      G+   
Sbjct: 175 PIGEYALEYLQKYFAEARRSLSENFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTD 234

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLRS+Q +LGH  +STT IYT+++       + EIY + HP
Sbjct: 235 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR----LQEIYQKHHP 290


>gi|270291303|ref|ZP_06197525.1| tyrosine recombinase XerD [Pediococcus acidilactici 7_4]
 gi|270280149|gb|EFA25985.1| tyrosine recombinase XerD [Pediococcus acidilactici 7_4]
          Length = 295

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 153/303 (50%), Gaps = 19/303 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L++ERGLS  T+ SY  + R    FL     ++  I  I+ +    I  ++   +
Sbjct: 7   DYLHALKVERGLSDNTIVSYRQELRHLQNFL-----QEQHIADIKDVDRYTILNYLDALK 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  S   ++S ++ F KYL        + + N+   K++  LP  L  ++      
Sbjct: 62  QTGRARSSSIHTISSLRKFFKYLLLNDQIQTNPMANIDPPKRAQHLPSVLTTEEV----- 116

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL     +K +  R+ AIL ++Y  GLR+SE ++L    +  +   +   GKG+K RI
Sbjct: 117 ERLLKVPDTSKPLGIRDRAILEVMYATGLRVSELIALNLNELHLEMGLIETVGKGNKQRI 176

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLN-PGVFQRYIRQLRRYLGL 256
           +P+   V    LE Y   P    L  +    +F    G PL   GV++    Q+++  G+
Sbjct: 177 IPI-GDVAIQWLERYINGPRRALLGAKRYNEIFLNQHGHPLTRQGVWKNLKAQVQK-AGI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + T HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT++  +     ++++YD+
Sbjct: 235 KKNITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITQQR----LVDVYDK 290

Query: 317 THP 319
            HP
Sbjct: 291 YHP 293


>gi|167627279|ref|YP_001677779.1| site-specific recombinase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597280|gb|ABZ87278.1| site-specific recombinase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 292

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 98/301 (32%), Positives = 148/301 (49%), Gaps = 20/301 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L NL +E GLS+ T+ SY  D    L FL  Y  +   I     L + ++ AFIS R  
Sbjct: 8   FLDNLWLEHGLSQNTISSYRTD----LKFLQSYFSQVELIN----LDFEQLYAFISYRSK 59

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD- 139
                RS  R +S ++ F  +L      T +    +   K +  LP+ + E      VD 
Sbjct: 60  NGYSSRSNARMISTLRKFYNWLISTGQATTNPTTKLTLPKLAKRLPKDMTE------VDV 113

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL     T  I  R+ A+L L+Y  GLR+SE + L   +I  +   +++ GKG K RI
Sbjct: 114 ERLLQAPDLTDDIGIRDKAMLELMYATGLRVSELVGLNTHDIDLNVGVIQVMGKGSKERI 173

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+     + + +Y++     L  N  +  +F     K +    F   I+      G+  
Sbjct: 174 VPIGEYALEYLHKYFEESRELLAKNFKEKAVFISKHSKRITRQSFWHRIKSYVLIAGINT 233

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HTLRH+FATHLL++G DLRS+Q +LGH  +STT IYT+++       + EIY + H
Sbjct: 234 DISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR----LQEIYQKHH 289

Query: 319 P 319
           P
Sbjct: 290 P 290


>gi|182416388|ref|YP_001821454.1| tyrosine recombinase XerD [Opitutus terrae PB90-1]
 gi|177843602|gb|ACB77854.1| tyrosine recombinase XerD [Opitutus terrae PB90-1]
          Length = 317

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 146/302 (48%), Gaps = 15/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + +ERGL+  T+ SY  D  Q    LA         +  R ++  +   +I   
Sbjct: 23  EAFLGYIALERGLAANTVASYRRDLDQAATHLA-----AQGARDWRAVTGEQAAGWIHSL 77

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            +      SL R LS ++S   +L + +   +     +   K S  +P  L E++   L+
Sbjct: 78  SSASYTVASLARKLSALRSLAHFLVRERFRADDFTALLSGPKASRRIPGTLTEEEIARLL 137

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                 T  + + +  R+ A+L L Y  GLR+SE   L  Q +  +   LR+ GKG K R
Sbjct: 138 AAP---TGGDARAL--RDRALLELFYSSGLRVSELAGLLLQQVDLEHGFLRVFGKGAKER 192

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+     +A+  Y     P  +       LF    G PL+  +    +++  +  GL 
Sbjct: 193 VVPIGGKAIEALATYLTAGRPHFVRSRTGSQLFLNKNGGPLSRVMLWMLVKKYAKRAGLT 252

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            +   H LRHSFATHLLS G DLR+IQ +LGH  +STTQIYT+V S+     ++E +D+ 
Sbjct: 253 KNVKPHGLRHSFATHLLSGGADLRAIQEMLGHASISTTQIYTSVESQR----LLEQHDKF 308

Query: 318 HP 319
           HP
Sbjct: 309 HP 310


>gi|148981819|ref|ZP_01816536.1| site-specific tyrosine recombinase XerD [Vibrionales bacterium
           SWAT-3]
 gi|145960727|gb|EDK26067.1| site-specific tyrosine recombinase XerD [Vibrionales bacterium
           SWAT-3]
          Length = 304

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 152/305 (49%), Gaps = 21/305 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA--FYTEEKITIQTIRQLSYTEIRAFIS 76
           + +L  + +ERGLS+ TL SY  D  + L ++    Y  + I++  ++      + A   
Sbjct: 15  EQFLDAMWMERGLSENTLVSYRTDLSKLLTWMEQNNYRLDFISLSGLQDYQSWLVDADFK 74

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           +         S  R LS I+   +YL + K+  +     + + K    LP+ L+E+Q   
Sbjct: 75  QT--------SRARMLSAIRRLFQYLHREKVRADDPSALLISPKLPQRLPKDLSEEQV-- 124

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
              + LL        I+ R+ A+L LLY  GLR++E +SLT +NI   Q  +R+ GKG K
Sbjct: 125 ---DALLDAPDPNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGK 181

Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R+VP+  +    I  + +   P  L  N    +F   R K +    F   I+      G
Sbjct: 182 ERLVPMGENAVDWIESFIEQGRPQLLGENSSDVVFPSKRAKQMTRQTFWYRIKHYAVIAG 241

Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           +     + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +I+
Sbjct: 242 IDTELLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIH 297

Query: 315 DQTHP 319
            Q HP
Sbjct: 298 TQHHP 302


>gi|332289908|ref|YP_004420760.1| site-specific tyrosine recombinase XerC [Gallibacterium anatis
           UMN179]
 gi|330432804|gb|AEC17863.1| site-specific tyrosine recombinase XerC [Gallibacterium anatis
           UMN179]
          Length = 296

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 97/311 (31%), Positives = 155/311 (49%), Gaps = 23/311 (7%)

Query: 19  QNWLQN----LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           Q+WL+     L IER LS  TLQSY+   +Q +  +   T E IT    RQ+  + IR  
Sbjct: 3   QDWLKKYWDYLRIERQLSAKTLQSYQ---QQIVACVELLTNEGIT--DWRQVDGSVIRFI 57

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++ +   + + SL   LS ++ F ++L + +    +    +   K    LP++++ +  
Sbjct: 58  LTQGKKSGLHEHSLALRLSSLRGFFQFLLRNQQIKVNPTDGISAPKAGKRLPKSIDAESI 117

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D            +  R+ AI+ L+Y  GLR+SE   L  ++I      L++ GKG
Sbjct: 118 SQLLD------IKSKDPLSLRDKAIMELMYSSGLRLSELRGLNLEDINFKARELKVLGKG 171

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K RI+P       A+ ++ ++    L  N Q   LF    G  L     Q+ + Q    
Sbjct: 172 NKERILPFGRYAAGALHQWLEV---RLQFNPQDNALFISHLGHRLTSSAIQQRLEQWGIK 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL      H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    + ++
Sbjct: 229 QGLNAHLNPHKLRHSFATHMLEASSDLRAVQELLGHENLSTTQIYTHLNFQH----LAQV 284

Query: 314 YDQTHPSITQK 324
           YD  HP   +K
Sbjct: 285 YDSAHPRAKRK 295


>gi|294787053|ref|ZP_06752307.1| tyrosine recombinase XerD [Parascardovia denticolens F0305]
 gi|315226701|ref|ZP_07868489.1| tyrosine recombinase XerD [Parascardovia denticolens DSM 10105]
 gi|294485886|gb|EFG33520.1| tyrosine recombinase XerD [Parascardovia denticolens F0305]
 gi|315120833|gb|EFT83965.1| tyrosine recombinase XerD [Parascardovia denticolens DSM 10105]
          Length = 310

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 153/309 (49%), Gaps = 20/309 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           R+ +L  + IE+GLS+ T ++YE D ++++ +LA +      I    Q+   ++  F++ 
Sbjct: 12  RELFLGYISIEKGLSEATRRAYESDLKKYMAWLARHG-----IDRPDQIRQEDVETFVAS 66

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +    RS+ R L+ I  + ++L  R +        ++  K ++ LP  L  ++    
Sbjct: 67  LSQEGESSRSIARRLASIHEYHRFLTSRGMAQADVSQGVKPPKAASVLPDVLTIEE---- 122

Query: 138 VDNVLLHTSHE--TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           V  +L  TS+E  T  +  R+ A+L  LY  G R+SEA+     ++  D    R+ GKG+
Sbjct: 123 VRRLLEKTSNERDTDPVVLRDRALLEFLYATGARVSEAVGANLTDVDLDDHFARLTGKGN 182

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVFQRYIRQL 250
           K R+VPL     +A+  Y D     L            +F   +GK L+       +++ 
Sbjct: 183 KQRLVPLGSYACQAMERYLDGPRAQLQAKAAKGAEVNAIFLNKKGKRLSRQSVWEIVQKA 242

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+      HTLRHS ATHL+  G D+R +Q +LGH  ++TTQIYT+++ +     +
Sbjct: 243 ADRAGITKEVHPHTLRHSCATHLIQGGADVRMVQELLGHASVTTTQIYTHISPQT----L 298

Query: 311 MEIYDQTHP 319
           +E Y   HP
Sbjct: 299 IESYMGAHP 307


>gi|260219998|emb|CBA27096.1| Tyrosine recombinase xerC 1 [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 321

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 157/320 (49%), Gaps = 35/320 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ-TIRQLSYTEIRAFISK 77
           + +L+ + +E+ L+  T++ Y  D       L   +E+      T+R +    IR ++++
Sbjct: 10  EKYLEFVRVEKRLAARTVELYSLD-------LGRLSEQATRAGVTMRDVRNHHIRRWVAQ 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             +     R +   LSG + F  +L +  + + + + ++R+ K    LP+AL    A+  
Sbjct: 63  MHSAGRSGRGIALILSGWRGFYAWLGREGLVSSNPVQDVRSPKAPKPLPKALAVDDAVQF 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------ 191
            D      S++  W++AR++AI+ LLYG GLR+ E + L      D +  + +Q      
Sbjct: 123 AD----FESYDNAWLEARDAAIVELLYGSGLRVGELVGLDVVAGKDAKGWIDMQAAEAHV 178

Query: 192 -GKGDKIRIVPLLPSVRKAILEYYDL----------CPFDLNLNIQLPLFRGIRGKPLNP 240
            GKG K R VP+  +  +A+  + +L                 +    LF G  G  L  
Sbjct: 179 LGKGSKRRSVPVGATAMQALQRWLELRGPSGTATAAPVDAAAAHAASALFTGRNGTRLTA 238

Query: 241 -GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
             V+QR  R+  +  GL +    H LRHSFA+H+L + GDLR +Q +LGH  ++TTQ+YT
Sbjct: 239 QSVWQRLKRR-SQLAGLNVPVHPHMLRHSFASHVLQSSGDLRGVQELLGHANITTTQVYT 297

Query: 300 NVNSKNGGDWMMEIYDQTHP 319
            ++ ++    + + YD  HP
Sbjct: 298 RLDFQH----LAKAYDAAHP 313


>gi|94969887|ref|YP_591935.1| tyrosine recombinase XerC subunit [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551937|gb|ABF41861.1| tyrosine recombinase XerC subunit [Candidatus Koribacter versatilis
           Ellin345]
          Length = 300

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 142/297 (47%), Gaps = 23/297 (7%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           E+  S  T+++Y  D  +F  FL     + I         +  IR F+S    + +   S
Sbjct: 19  EKNSSVHTIKAYTTDLEEFSAFLGPAKWDDI--------DHVRIRGFLSHLYDKGLSKPS 70

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           + R+L+ ++S  K+L +     ++    +   K    LPR    ++  T++D  +     
Sbjct: 71  VARALAALRSLYKWLAREGFVEQNPAALVATPKLPKKLPRVPTMEELNTVMDAEM----P 126

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
           E      R++ I  LLYGCG+R SE   +   +I      + I+GKG K R VP   +  
Sbjct: 127 EAASFPERDALIFELLYGCGIRNSELTGINLDDIRWSNEAILIRGKGKKERFVPFGDAAA 186

Query: 208 KAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            A   Y       L     + N  L   R +  + L      R ++++    GLP     
Sbjct: 187 VAAKVYLKKRQDILAERHKSTNALLINLRDV--QRLTSRSVGRIVKKIAVARGLPADVHP 244

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HTLRH+F THLL  G DLR+IQ +LGH RL+TTQ YT +++++    ++E+YD+THP
Sbjct: 245 HTLRHAFGTHLLEEGADLRAIQELLGHERLATTQRYTQLSTRH----VLEVYDKTHP 297


>gi|300858733|ref|YP_003783716.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41]
 gi|300686187|gb|ADK29109.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41]
 gi|302206440|gb|ADL10782.1| Tyrosine recombinase XerC [Corynebacterium pseudotuberculosis C231]
 gi|302330996|gb|ADL21190.1| Tyrosine recombinase XerC [Corynebacterium pseudotuberculosis 1002]
 gi|308276682|gb|ADO26581.1| Tyrosine recombinase XerC [Corynebacterium pseudotuberculosis I19]
          Length = 293

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 151/301 (50%), Gaps = 20/301 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +++++LE+  G S  TL+ Y  D   F    A    E      ++  +   +R ++ +  
Sbjct: 10  DFIEHLELVSGRSPATLKGYRSDLNTF----AMRKPE------LKDFTLDNLRDWLGEAV 59

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +     +L R ++  +S   +L K+          +   K    LP+ L   QA ++V+
Sbjct: 60  AEGKTRATLARRVAAARSMSSWLLKQGYIETDMAARLVAPKVGRHLPKVLAAGQAESVVE 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
               H + +T+   AR+ A+L LLY  G+R+SE   +  ++I   + TL++ GKGDK R+
Sbjct: 120 ----HPASKTEAEFARDRAVLELLYATGIRVSELCGINLEDIDWRRKTLKVLGKGDKQRV 175

Query: 200 VPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP   +   A+  + +   P       +  LF G+RG  L+P   +R +    +  G+  
Sbjct: 176 VPFGQAACDALTHWIETGRPAMCKDQSEAALFLGVRGGRLDPRQVRRLVDAAGKEAGIS- 234

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H++RH+ ATH+L  G DLR +Q +LGH  L+TTQIYT+V+S+     + E + ++H
Sbjct: 235 GLGPHSVRHTAATHMLDGGADLRIVQELLGHSSLNTTQIYTHVSSQR----LKEAFKRSH 290

Query: 319 P 319
           P
Sbjct: 291 P 291


>gi|32474160|ref|NP_867154.1| integrase/recombinase [Rhodopirellula baltica SH 1]
 gi|32444697|emb|CAD74699.1| integrase/recombinase [Rhodopirellula baltica SH 1]
          Length = 325

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 152/308 (49%), Gaps = 30/308 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L+ E  L+  T+ +Y  D ++F+ ++       +TI        TE+  F++   
Sbjct: 38  EFLVYLKRECHLADNTVAAYGRDMKRFVTWMDGRRPADLTI--------TELSDFVASLH 89

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +   S+ R++  I++F KYL+   IT ++    +   K    +P  L+  +    + 
Sbjct: 90  GEGLAPASISRAIVAIRTFFKYLQLEGITVDNPAELLATQKAWQRMPGVLSPNEVEAFLS 149

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            V      ++ W   R+ A+L +LY  G R SE  +L  +++  D+ TLR  GKGDK R+
Sbjct: 150 AV---KKSDSFW--QRDRALLEVLYATGCRASEVCTLRVRDLTLDEKTLRCHGKGDKQRM 204

Query: 200 VPLLPSVRKAILEY--------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           VP+     +AI  Y         D  P  ++   +L L RG  GK L+     R +++  
Sbjct: 205 VPIGGRAIRAIQLYLEESRHILADRNPGQID---ELFLSRG--GKALDRIQLWRLVKRYA 259

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +  G+    + H+LRHSFATHLL+ G DLR +Q +LGH  + TTQIYT+V        + 
Sbjct: 260 KRAGISDEISPHSLRHSFATHLLAGGADLRQVQEMLGHASIQTTQIYTHVEHSR----LQ 315

Query: 312 EIYDQTHP 319
            ++   HP
Sbjct: 316 RVHRDFHP 323


>gi|297584028|ref|YP_003699808.1| tyrosine recombinase XerC [Bacillus selenitireducens MLS10]
 gi|297142485|gb|ADH99242.1| tyrosine recombinase XerC [Bacillus selenitireducens MLS10]
          Length = 303

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 150/302 (49%), Gaps = 17/302 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++++ L+IE+G S  T+  Y+ D        AF+     T + +  +++ +IR +++  
Sbjct: 14  RDYMRYLQIEKGASPSTISQYQKD------ICAFFQNMDHT-KPVEDVNHQDIRRYLALL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +      R++ R L+ ++S  ++L++      +  L +   K    LP  L E +   + 
Sbjct: 67  QKDGYARRTVARKLASLRSLWRFLEREGRIQLNPFLYVTTPKLDKKLPSFLYENEMQAIF 126

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D +          + ARN AI+ LLY  G+R SE   L  ++I  D STL + GKG K R
Sbjct: 127 DAI-----DTDSLLGARNLAIIELLYASGIRASECTGLKLKDIDLDLSTLLVMGKGKKER 181

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
            +P+     +A+  Y D        + Q  PLF   RG  L     ++ + ++     L 
Sbjct: 182 FLPVGSFAVEALSLYLDKRTAKFGPHAQSDPLFINYRGGALTDRGLRKILAKVIEDASLT 241

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T H +RH+FATH+L+ G DLR++Q +LGH  L  TQIYT+V      D + ++Y  +
Sbjct: 242 SKLTPHVIRHTFATHMLNEGADLRTVQELLGHTDLKATQIYTHVTR----DRLRDVYRHS 297

Query: 318 HP 319
           HP
Sbjct: 298 HP 299


>gi|293400627|ref|ZP_06644772.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305653|gb|EFE46897.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 303

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 153/316 (48%), Gaps = 34/316 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  +++    S  T+ SY  D +++L FL     +      I  ++Y +++ F+ ++
Sbjct: 8   EDYLHYIQVVENKSLATVASYRNDLKEYLAFL-----DAHGFTAIEDVTYMDLQDFLKEQ 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + +K    S+   ++ ++ F +YL           L++ + K +  LP   N      L+
Sbjct: 63  KVKK-KTSSVNHMITSLRMFHRYLTMTYPKIPDATLHICSSKTAKKLPTYFNVADIERLL 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D      S +   +D  + A+L +LYGCGLR+SE   L       +Q  L++ GKG+K R
Sbjct: 122 D------SFQDSDMDIFHKALLEVLYGCGLRVSELTHLRLNMTHLEQGFLKVLGKGEKER 175

Query: 199 IVPLLPSVRKAILEYYDLC---------PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           +VP+      A+ +Y +           PF         +F   RG+ ++       I+ 
Sbjct: 176 MVPMHQRSVHALQQYLEFVRPQWVKQRSPF---------VFLNSRGQNISRQYVHNLIKS 226

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
               LGL    +AH+ RHSFATHLL  G DLR +Q +LGH  ++TTQIYT++ +K     
Sbjct: 227 KLTALGLDERLSAHSFRHSFATHLLDGGADLRVVQELLGHADIATTQIYTHIQNKR---- 282

Query: 310 MMEIYDQTHPSITQKD 325
           + + Y   HP   ++D
Sbjct: 283 LQDAYASFHPRSKEED 298


>gi|116618278|ref|YP_818649.1| tyrosine recombinase XerC subunit [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097125|gb|ABJ62276.1| tyrosine recombinase XerC subunit [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 300

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 139/287 (48%), Gaps = 9/287 (3%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +E Q +   LE ER  S  TL++Y  D  +F  +L     E        ++   ++R ++
Sbjct: 4   REEQLYHDYLESERQYSPQTLKAYLTDIAEFKNYL----HESGGFTKFGEVQTLDVRVYL 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +K+   ++ R +S ++ F ++L   +   ++   ++   K  N LP    E +  
Sbjct: 60  NDLYEKKLARTTISRKISSLRMFYQFLITNQFAIDNPFDSISLKKHQNQLPDFFYEDELH 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L D    H      ++  RN+A+L  LY  G+R++E   LT   +   Q  + I GKG+
Sbjct: 120 ELFDVAYNHED----YLWERNAALLEFLYATGIRVAEIAGLTLSQLDFSQRLVLIHGKGN 175

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K R VP        + EY       L +N +   +F   RG+P+ P      + QL +  
Sbjct: 176 KDRYVPFGHFAENIMKEYITDLRASLTVNQEHEYVFVNHRGEPITPAGITYILNQLMQRS 235

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            L      H LRH+FATHL++ G D+R++Q +LGH  LSTTQ+YT+V
Sbjct: 236 ALTGKIHPHMLRHTFATHLINRGADMRTVQELLGHVNLSTTQMYTHV 282


>gi|268591702|ref|ZP_06125923.1| tyrosine recombinase XerD [Providencia rettgeri DSM 1131]
 gi|291312661|gb|EFE53114.1| tyrosine recombinase XerD [Providencia rettgeri DSM 1131]
          Length = 300

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 157/303 (51%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + +E+ L++ TL SY  D +    +L  +     ++Q+I      ++++F ++R
Sbjct: 11  EQFLDTIWLEQDLAENTLASYRNDLQLLDKWLDAHQLHLESVQSI------DLQSFFAER 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + KI  +     +   K    LP+ L+EKQ    V
Sbjct: 65  IDCGYKATSSARLLSAMRRLFQYLYREKIRLDDPSAVIAAPKIPQRLPKDLSEKQ----V 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +++L   + E   ++ R+ A+L +LY CGLR+SE + LT  +I   Q  +R+ GKGDK R
Sbjct: 121 EDLLNAPATEDA-LELRDKAMLEVLYACGLRVSELIGLTFSDISLRQGVIRVVGKGDKER 179

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           ++PL       + +Y D   P  LN      LF   RG  +    F   I+       + 
Sbjct: 180 LIPLGEEAIYWLEKYIDEGRPDLLNGKTSDILFPSKRGTKMTRQTFWHRIKYYAVLAHID 239

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  +++Q
Sbjct: 240 SELLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRVLHEQ 295

Query: 317 THP 319
            HP
Sbjct: 296 HHP 298


>gi|194335806|ref|YP_002017600.1| integrase family protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|254799350|sp|B4SDZ2|XERC_PELPB RecName: Full=Tyrosine recombinase xerC
 gi|194308283|gb|ACF42983.1| integrase family protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 336

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 160/318 (50%), Gaps = 21/318 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQTIRQLSYTEIRAFISKR 78
           ++L+ L   + LS  T+ +Y  D  QF  FLA +     +++    Q++  E+R F++  
Sbjct: 22  DFLEKLSTLKNLSPNTVIAYRTDLFQFFSFLAQHLGLADLSLFDPEQVTTVEVRLFMAAL 81

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +  RS+ R L+ +KSF +YL++      S    +   +    +P  L E+Q     
Sbjct: 82  IERGVRQRSIARKLASVKSFYRYLQESGHIRNSLFSALATPQYPKRVPGFLTEQQTEKFF 141

Query: 139 DNVLLHTSH----------ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           + +L  ++           +  +I  R+ +IL LLY  GLRISE + L    +  ++  +
Sbjct: 142 NELLPQSAQGFRKPEKNELDESFICERDRSILELLYSSGLRISELIGLKVGELDLERGYV 201

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCP--FDL----NLNIQLPLFRGIRGKPLNPGV 242
           ++ GKG K RIVP+      A+ +Y+++    F +    +    L +F    GK L P +
Sbjct: 202 KLTGKGRKQRIVPVGQQAVDALKKYFEVRRNFFRMKRTGDAGELLHVFVTKSGKKLYPML 261

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            QR  R+    +        H LRH+FATHLL++G DL S+  +LGH  LSTT+IYT+V 
Sbjct: 262 VQRLTRKYLTSVTDQKKKNPHLLRHTFATHLLNSGADLNSVSDMLGHSNLSTTEIYTHVT 321

Query: 303 SKNGGDWMMEIYDQTHPS 320
                + + E+Y + HP+
Sbjct: 322 F----ERLKEVYRKAHPN 335


>gi|57866964|ref|YP_188637.1| tyrosine recombinase XerD [Staphylococcus epidermidis RP62A]
 gi|293366542|ref|ZP_06613219.1| integrase/recombinase XerD [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81674519|sp|Q5HP53|XERD_STAEQ RecName: Full=Tyrosine recombinase xerD
 gi|57637622|gb|AAW54410.1| tyrosine recombinase XerD [Staphylococcus epidermidis RP62A]
 gi|291319311|gb|EFE59680.1| integrase/recombinase XerD [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329725406|gb|EGG61889.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU144]
 gi|329735284|gb|EGG71576.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU045]
          Length = 295

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 151/302 (50%), Gaps = 15/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  ++IE+GLS  T+ +Y  D +++  +L     E   I  I  +    I+  +   
Sbjct: 6   EEYLNFIQIEKGLSNNTIGAYRRDLKKYKDYL-----EDNKISHIDFIDRQIIQECLGHL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  +SL R +S I+SF ++  + K   +   + +   K    LP  L   + +   
Sbjct: 61  IDMGQSSKSLARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEIDEVI--- 117

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL T   TK    R+  +L LLY  G+R++E + L  +++      +R+ GKG+K R
Sbjct: 118 --ALLETPDLTKNNGYRDRTMLELLYATGMRVTEIIQLDVEDVNLMMGFVRVFGKGNKER 175

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           IVPL  +V + +  Y +   P  L       LF  + GK L+     + I+Q      + 
Sbjct: 176 IVPLGDTVIEYLTTYIETVRPQLLKQTTTQALFLNMHGKSLSRQGIWKIIKQYGLKANIN 235

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y Q 
Sbjct: 236 KTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYTQF 291

Query: 318 HP 319
           HP
Sbjct: 292 HP 293


>gi|171742561|ref|ZP_02918368.1| hypothetical protein BIFDEN_01674 [Bifidobacterium dentium ATCC
           27678]
 gi|283456353|ref|YP_003360917.1| Integrase/recombinase [Bifidobacterium dentium Bd1]
 gi|306822472|ref|ZP_07455850.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679]
 gi|309801397|ref|ZP_07695524.1| site-specific tyrosine recombinase XerC [Bifidobacterium dentium
           JCVIHMP022]
 gi|171278175|gb|EDT45836.1| hypothetical protein BIFDEN_01674 [Bifidobacterium dentium ATCC
           27678]
 gi|283102987|gb|ADB10093.1| Integrase/recombinase [Bifidobacterium dentium Bd1]
 gi|304554017|gb|EFM41926.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679]
 gi|308221912|gb|EFO78197.1| site-specific tyrosine recombinase XerC [Bifidobacterium dentium
           JCVIHMP022]
          Length = 306

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 147/285 (51%), Gaps = 14/285 (4%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L+  RGLS  T ++Y  D  + +  L     E +  + + +++  ++R ++S+  +++  
Sbjct: 14  LKANRGLSDNTRKAYRGDLEECMTQL-----EILGCEDLNEVTIEDLRMWMSQS-SKRHA 67

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S+ R    ++ F  +  +R +T  +    +   K  ++LP  L+E QA  L+D V   
Sbjct: 68  RSSMARKTVAVRGFFAWTHERGVTNANPAAMLMTPKIPDTLPAVLSESQAEKLMDCVDEQ 127

Query: 145 T------SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                  S   + +  RN+A+L +LY  G+R++E + L   ++  D  T+++ GKG+K R
Sbjct: 128 MPKSRTKSVRKQAVGLRNAAMLEVLYATGIRVAELVGLDVHDVAFDNRTMKVTGKGNKQR 187

Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP      ++I  +  D  P  +       LF G +G  ++  V ++ + +  +  G+P
Sbjct: 188 VVPFGVPAEQSIRRWLEDGRPRLVRARSADALFLGAQGNRIDQRVVRQVVHECAQRAGVP 247

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              + H LRHS ATHLL  G DLR +Q +LGH  L TTQ YT+V+
Sbjct: 248 -DISPHALRHSAATHLLDGGADLRQVQELLGHSSLKTTQRYTHVS 291


>gi|332289739|ref|YP_004420591.1| site-specific tyrosine recombinase XerD [Gallibacterium anatis
           UMN179]
 gi|330432635|gb|AEC17694.1| site-specific tyrosine recombinase XerD [Gallibacterium anatis
           UMN179]
          Length = 297

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 155/302 (51%), Gaps = 19/302 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L + + LS+ T+ SY  D    L FL+ + E+     T++Q+ Y +++AF+ +R  
Sbjct: 10  FLDELWLGKNLSQNTIASYRSD----LKFLSEWLEKHHL--TLQQVQYLDLQAFLGERLQ 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     S  R LS ++   +YL + K   ++    + + K    LP+ L E Q   L   
Sbjct: 64  QGYKATSYSRMLSAMRKLFQYLYQEKYREDNPCSLLTSPKLPARLPKYLTESQVTDL--- 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L+T      ++ R+ A+L LLY  GLR+SE +SLT  NI   Q  +R+ GK DK R+V
Sbjct: 121 --LNTPATENALELRDKAMLELLYATGLRVSELVSLTTNNINLQQGVVRVIGKADKERLV 178

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           P+       + ++      +L L  Q    LF   +GK +    F   I+       +  
Sbjct: 179 PIGEEANYWVQQFILYGRAEL-LGGQSSDVLFPSRQGKLMTRQTFWYRIKHYASLANIDA 237

Query: 259 ST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     + +++ + 
Sbjct: 238 DKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER----LKQLHSKY 293

Query: 318 HP 319
           HP
Sbjct: 294 HP 295


>gi|300310183|ref|YP_003774275.1| site specific integrase/recombinase [Herbaspirillum seropedicae
           SmR1]
 gi|300072968|gb|ADJ62367.1| site specific integrase/recombinase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 307

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 155/319 (48%), Gaps = 17/319 (5%)

Query: 3   GNNLPEIVSFELLKER-QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           G   P+I +  + +E    +  +L +E GLSK TL++Y  D  ++  +L  Y E     +
Sbjct: 2   GRTTPKIEAPAVSREAIDEFCDSLWLEDGLSKNTLEAYRRDMTRYAHWL--YQERA---K 56

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            + +    ++ A+ + R  Q     S  R L+ +K F +   ++        L +R+ ++
Sbjct: 57  ALYETQAEDLNAYFAARHDQTKPSSS-NRRLAVLKRFFQLALRQHHVAADPCLKLRSARQ 115

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
               P+ L+E Q        LL     +  +  R+ A++ L+Y  GLR+SE + L    +
Sbjct: 116 PQRFPKTLSEGQV-----EALLAAPDVSTPLGLRDRAMIELMYASGLRVSELVLLKSIEV 170

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNP 240
             ++  LR+ GKG K R+VP        ++ Y        L   +   LF   RG P+  
Sbjct: 171 GMNEGVLRVTGKGSKTRLVPFGEEAGSWLMRYLAEARAQILQGQVDDALFVTARGGPMTR 230

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            +F   I++     G+    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+
Sbjct: 231 QMFWTLIKKYALQAGVTARLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTH 290

Query: 301 VNSKNGGDWMMEIYDQTHP 319
           V  +     + +++   HP
Sbjct: 291 VARER----LKQLHAAHHP 305


>gi|73539788|ref|YP_294308.1| site-specific tyrosine recombinase XerC [Ralstonia eutropha JMP134]
 gi|72117201|gb|AAZ59464.1| tyrosine recombinase XerC subunit [Ralstonia eutropha JMP134]
          Length = 339

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 154/322 (47%), Gaps = 39/322 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L  LE  R L+  T+ SY  D    L  L  +  +      +  L    IRAF ++ 
Sbjct: 16  QRYLAWLEGSRKLAGHTISSYRRD----LTVLQAHAAKHAPGIALLALQTRHIRAFAARM 71

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTL 137
             + +   S+ R+LS  + F  +  +  +  ++N ++ +R  +  + LP+AL+ + A+ L
Sbjct: 72  HGEGLAGTSIARTLSAWRGFYLWAAQHGLGVQANPVDGVRAPRSGHRLPKALSVEHAVAL 131

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT----------PQNIMD-DQS 186
           V +        T     R+ A+  L Y  GLR++E + L               +D   +
Sbjct: 132 VSHPA-----GTDAAALRDQAVWELFYSSGLRLAELVQLDVRYERLDGYESAGWLDLSGA 186

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDL---------CPFDLNLNIQLPLFRGIRGKP 237
            L + GKG + R VP+     +A+  +  +          P D +      LF G RG  
Sbjct: 187 ELTVTGKGSRRRTVPVGSKAMEALRAWLGVREQLLRPGAAPEDASA-----LFLGARGHR 241

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+  V Q  ++Q     G+P     H LRHSFATH+L + GDLR++Q +LGH  ++TTQI
Sbjct: 242 LSMRVVQMRLKQQAIRAGVPADVHPHMLRHSFATHMLQSSGDLRAVQELLGHASIATTQI 301

Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319
           YT+++ ++    + ++YD+ HP
Sbjct: 302 YTSLDFQH----LAKVYDKAHP 319


>gi|37527425|ref|NP_930769.1| site-specific tyrosine recombinase XerD [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36786860|emb|CAE15925.1| Integrase/recombinase xerD [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 303

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 151/303 (49%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + +E  L++ TL SY  D +    +L  +    +++QTI      ++ +F+++R
Sbjct: 14  EQFLDAIWLEHDLAENTLASYRLDLQALDNWLIHHGHNLLSVQTI------DLHSFLAER 67

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++    Y  + K+  +     +   K    LP+ L+EKQ     
Sbjct: 68  VDGGYKASSSARLLSAMRQLFLYFYREKMREDDPTALLSAPKLPKRLPKDLSEKQV---- 123

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL+     + ++ R+ A+L +LY CGLR+SE + LT  ++   Q  +R+ GKG+K R
Sbjct: 124 -EDLLNAPCTDQPVELRDKAMLEVLYACGLRVSELVGLTLSDVSLRQGVVRVIGKGNKER 182

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       +  Y +     L     L  LF   RG+ +    F   I+      G+ 
Sbjct: 183 LVPLGEEAIYWLENYLEYGRVGLLNGATLDVLFPSNRGRQMTRQTFWYRIKHYALLAGID 242

Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  ++ Q
Sbjct: 243 TGRLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKLLHQQ 298

Query: 317 THP 319
            HP
Sbjct: 299 HHP 301


>gi|189465186|ref|ZP_03013971.1| hypothetical protein BACINT_01531 [Bacteroides intestinalis DSM
           17393]
 gi|189437460|gb|EDV06445.1| hypothetical protein BACINT_01531 [Bacteroides intestinalis DSM
           17393]
          Length = 316

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/291 (32%), Positives = 147/291 (50%), Gaps = 24/291 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT--EIRAFIS 76
           + + Q L++E+ LS  TL +Y  D  + L FL          + I  L+ T  +++ F +
Sbjct: 18  RKYQQYLKLEKALSANTLDAYLTDLNKLLCFLK--------TENIDMLAVTLDDLQRFAA 69

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                 I  RS  R LSGIKSF  +L       +     +   K    LP  L  ++  T
Sbjct: 70  GLHDIGIHPRSQARILSGIKSFFHFLVMADYREDDPSELLEGPKIGFKLPEVLTVEEIDT 129

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           ++  V +     +K    RN AIL  LY CGLR+SE  +L    +  D+  ++++GKG K
Sbjct: 130 IISTVDM-----SKKEGQRNRAILETLYSCGLRVSELCNLKLSELYFDEGFIKVEGKGSK 184

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLN-----IQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            R+VP+ P   K I +Y+ L   D NL       +  +F    G  ++  +    I++L 
Sbjct: 185 QRLVPISPRAIKEI-KYWLL---DRNLGKIKKGFEDYVFLARWGNSISRIMVFHLIKELA 240

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              G+  + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++
Sbjct: 241 EKAGITKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHID 291


>gi|311745481|ref|ZP_07719266.1| tyrosine recombinase XerD [Algoriphagus sp. PR1]
 gi|126578034|gb|EAZ82254.1| tyrosine recombinase XerD [Algoriphagus sp. PR1]
          Length = 294

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 155/302 (51%), Gaps = 15/302 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKR 78
           +++  LE E+  S  T+ +Y  D  QFL F++  + EE I       + ++EIRA++   
Sbjct: 4   SFINYLEFEKKSSSHTVLAYRKDLEQFLEFVSVSFGEEDILF-----VGHSEIRAWVIDL 58

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
              ++   ++ R ++ ++S+ K+L + ++ ++     +++LK    LP  L E   LT +
Sbjct: 59  VENQLSTTTVNRKIATLRSYYKFLLRSRVISKDPTYKLKSLKNPKKLPEFLQE---LT-I 114

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            +VL  + +E  +   R+  +L  LY  G+R+SE   L   +I   +  +++ GK  K R
Sbjct: 115 SSVLEESVYEENFEGQRDKMVLEFLYLTGVRLSELTGLKWGDINLSEKVVKVLGKRKKER 174

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF-RGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           I+PL   + + I+ Y  +     +   Q   F     GKP  P +  R +R+        
Sbjct: 175 IIPLTNGLARNIISYQKVFEERFSKVSQSDYFIVSNNGKPSYPMMIYRVVRKYLDIFAQT 234

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FATHLL+ G DL +++ +LGH  L+ TQ+YT+    N  + +  +++Q 
Sbjct: 235 SKRSPHVLRHTFATHLLNKGADLNAVKDLLGHSNLAATQVYTH----NSLEKLKAVFEQA 290

Query: 318 HP 319
           HP
Sbjct: 291 HP 292


>gi|258514510|ref|YP_003190732.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257778215|gb|ACV62109.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 301

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 155/302 (51%), Gaps = 11/302 (3%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N++  L++++  S  T++SY+ D    + F +    +K        +S+  +R ++++ +
Sbjct: 7   NFIIYLQLQKNASPKTVESYQKDLFDGIDFFSAALNKKDNELLPMDVSHNLMRRYLAQMQ 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +   ++ R L+  +SF KYL +     ++++  +   K +  LP  L  +Q      
Sbjct: 67  QKGLARSTVARRLASWRSFYKYLCREDYLQQNHLAGVATPKGNGKLPLFLETEQL----- 121

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            +LL     T  +  R++A+L +LY  GLR+SEA++L    +  D   L+  GKG K R+
Sbjct: 122 KLLLEAPDSTTSLGQRDAALLEILYAAGLRVSEAVNLDLSALDFDSRMLKAYGKGSKERM 181

Query: 200 VPLLPSVRKAILEYYDLCPFDLN--LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +P       A+  Y       L+     +  +F    G  L+    ++ I +     GL 
Sbjct: 182 IPFGTYAAAALKLYIKDGRHKLSKISQSEQAVFLNNSGTRLSDRGIRKIIDKYIEKTGLK 241

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + + HTLRH+FATHLL NG DLRS+Q +LGH RLSTTQIYT+V+ +     +  ++ + 
Sbjct: 242 SAISPHTLRHTFATHLLDNGADLRSVQELLGHVRLSTTQIYTHVSVEK----LKGVHKKY 297

Query: 318 HP 319
           HP
Sbjct: 298 HP 299


>gi|225619262|ref|YP_002720488.1| tyrosine recombinase XerD [Brachyspira hyodysenteriae WA1]
 gi|225214081|gb|ACN82815.1| tyrosine recombinase XerD [Brachyspira hyodysenteriae WA1]
          Length = 309

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 166/312 (53%), Gaps = 25/312 (8%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           + LL+E  ++LQ L      +  T+ SY  D +++  FL     + I +    + ++  +
Sbjct: 15  YVLLEEFSDYLQTL----NFAAHTINSYNKDLKEYFQFLH---NKNIPLD---EANHYTV 64

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           R +++  + + + + ++ R LS IK F KYL +   + ++ I++M++ K+   + + L  
Sbjct: 65  RDYLTFLKEKSLTNSTMSRHLSSIKKFYKYLIRNGYSDKNRIVDMKSPKREEHIAKFL-- 122

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
             ++  +DN+L        +   R+  +   +Y  GLR+SE  SL    I     TLRI 
Sbjct: 123 --SIDDIDNILA-IDDGGDFTLIRDKMMALFMYAIGLRVSELASLKLSMIKKGSETLRIC 179

Query: 192 GKGDKIRIVPLLPSVRK---AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           GKG K+R +P+LP + +     +E   +   + + N    +F    GKP++    +  ++
Sbjct: 180 GKGSKVRDIPILPIIYENWDVYMEKRRIIQREYSENNDY-IFINRFGKPISDRSIRTSMK 238

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGG 307
           +L R   + +  + HTLRH+FATHLL+N  ++R +Q +LGH  ++TTQ YT+V NS+   
Sbjct: 239 RLIRNANISIDFSPHTLRHTFATHLLNNDAEIRGVQELLGHETIATTQRYTHVTNSR--- 295

Query: 308 DWMMEIYDQTHP 319
             + E+Y++ HP
Sbjct: 296 --LFEVYNKFHP 305


>gi|27468099|ref|NP_764736.1| site-specific recombinase [Staphylococcus epidermidis ATCC 12228]
 gi|251810914|ref|ZP_04825387.1| integrase/recombinase XerD [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876077|ref|ZP_06284944.1| tyrosine recombinase XerD [Staphylococcus epidermidis SK135]
 gi|34222791|sp|Q7ZAJ2|XERD_STAES RecName: Full=Tyrosine recombinase xerD
 gi|27315645|gb|AAO04780.1|AE016748_14 site-specific recombinase [Staphylococcus epidermidis ATCC 12228]
 gi|251805594|gb|EES58251.1| integrase/recombinase XerD [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295102|gb|EFA87629.1| tyrosine recombinase XerD [Staphylococcus epidermidis SK135]
 gi|329737213|gb|EGG73467.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU028]
          Length = 295

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 98/304 (32%), Positives = 157/304 (51%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTI-RQLSYTEIRAFIS 76
           + +L  ++IE+GLS  T+ +Y  D +++  +L    + KI+ I  I RQ+    +   I 
Sbjct: 6   EEYLNFIQIEKGLSNNTIGAYRRDLKKYKDYLE---DNKISHIDFIDRQIIQECLGHLID 62

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             ++ K    SL R +S I+SF ++  + K   +   + +   K    LP  L   + + 
Sbjct: 63  MGQSSK----SLARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEIDEVI- 117

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
                LL T   TK    R+  +L LLY  G+R++E + L  +++      +R+ GKG+K
Sbjct: 118 ----ALLETPDLTKNNGYRDRTMLELLYATGMRVTEIIQLDVEDVNLIMGFVRVFGKGNK 173

Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            RIVPL  +V + +  Y +   P  L       LF  + GK L+     + I+Q      
Sbjct: 174 ERIVPLGDTVIEYLTTYIETVRPQLLKQTTTQALFLNMHGKSLSRQGIWKIIKQYGLKAN 233

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y 
Sbjct: 234 INKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYT 289

Query: 316 QTHP 319
           Q HP
Sbjct: 290 QFHP 293


>gi|154509161|ref|ZP_02044803.1| hypothetical protein ACTODO_01682 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798795|gb|EDN81215.1| hypothetical protein ACTODO_01682 [Actinomyces odontolyticus ATCC
           17982]
          Length = 303

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 148/307 (48%), Gaps = 18/307 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-LSYTEIRAFISK 77
           + W + L + R +S  T+ +Y  D    + FL+   +   T + +R+ L+   +R+++++
Sbjct: 7   ERWEEYLRLGRRMSPHTVSAYLGDLHSLMEFLSL--DADATPEQLREALTQRAVRSWLAR 64

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    ++ R  + I++F  +  +  I        + + +    LP  L+E  A   
Sbjct: 65  TLADGGARSTIARHTAAIRNFTSWAMREGILVSDPAALLSSPRADQLLPSPLDESDA--- 121

Query: 138 VDNVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              VLL+T+ +          RN AIL L Y CGLR+SE  +L   ++  D  T+R+ GK
Sbjct: 122 --RVLLNTARDEAAAGGASQIRNWAILELTYACGLRVSEVCALDISSLNRDALTVRVVGK 179

Query: 194 GDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G+K R+VP  P    A+  +     P          LF G +G  ++P + +  + +   
Sbjct: 180 GNKERVVPYGPPAADALDHWLVRGRPQLAGERSGNALFLGDKGGRIDPRIVRSMVHKTAA 239

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+      H LRHS ATHLL  G DLR++Q +LGH  LSTTQ YT+V++      +  
Sbjct: 240 RAGV-HDIAPHGLRHSTATHLLQGGADLRAVQEMLGHSSLSTTQRYTHVDTAR----LSA 294

Query: 313 IYDQTHP 319
           IY + HP
Sbjct: 295 IYQRAHP 301


>gi|300783889|ref|YP_003764180.1| integrase/recombinase XerC [Amycolatopsis mediterranei U32]
 gi|299793403|gb|ADJ43778.1| integrase/recombinase XerC [Amycolatopsis mediterranei U32]
          Length = 326

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 142/302 (47%), Gaps = 16/302 (5%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           ++L +ERGLS  T+++Y  D    L F+     E      + +L    +RA+++ +++  
Sbjct: 34  RHLGLERGLSAHTVRAYVGDAVSLLGFVVDGGSE------VAELDLARLRAWLAAQQSGG 87

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
               +L R  +  ++F  +  +  +        +   +   +LP  L   QA  ++    
Sbjct: 88  ASRTTLARRAASARTFTAWAHRTGVLATDPGGRLAAPRAHRTLPGVLRAGQAGEVMQASA 147

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
              +     +  R+ AI+ LLY  G+R+SE   L        +  + + GKG K R+VP 
Sbjct: 148 AGAAQRDP-VALRDRAIVELLYATGIRVSELCGLDVGEADFSRRVVTVLGKGGKERVVPF 206

Query: 203 LPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
                +A+ ++ D     +       + +  LF G+RGK ++P   +R +      +   
Sbjct: 207 GVPAAEALADWIDEGRPKIITESGGESAEAALFLGVRGKRVDPRAVRRVVHDAVTAVPGA 266

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           L    H LRHS ATHLL  G DLRS+Q +LGH  L+TTQ+YT+V      D +  I+D+ 
Sbjct: 267 LDMGPHGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTHVTV----DRLKAIHDRA 322

Query: 318 HP 319
           HP
Sbjct: 323 HP 324


>gi|169350427|ref|ZP_02867365.1| hypothetical protein CLOSPI_01195 [Clostridium spiroforme DSM 1552]
 gi|169292747|gb|EDS74880.1| hypothetical protein CLOSPI_01195 [Clostridium spiroforme DSM 1552]
          Length = 298

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 154/304 (50%), Gaps = 22/304 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L+ ER  S  T+ SY    R+ + F  +  +E I+      + Y  +R +++K   
Sbjct: 10  YLDCLKYERNYSNNTIASYR---REIMHFKVYLVQEGIS--DYNDVDYLMLRGYLTKLYD 64

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   S+   LS ++SF  YL K +   ++    + + K     P  L +++ + L+D+
Sbjct: 65  KNLAKSSINHRLSALRSFFDYLLKEEFIKDNPFKLIESQKVGQRNPDFLFQEEMIDLLDS 124

Query: 141 VLLHTSHETKW-IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           +      ETK  +  RN A+L L+Y  GLR SE  +L   +I  +Q  + + GKG K R 
Sbjct: 125 I------ETKDDLGIRNKAMLELMYASGLRCSEVANLQISDIDFNQMVVLVHGKGGKDRY 178

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           VP     R  +++Y D      NL I+      +F    G PL     +  + ++     
Sbjct: 179 VPFHEYARDWLVKYIDEARN--NLMIKNAGHNFIFVNKLGNPLTNRGIENIVDRVTFKYD 236

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                  HT+RHSFATHLL+ G D+R++Q +LGH  L+TTQ+YT++ SKN    + ++Y 
Sbjct: 237 ATKKIHPHTIRHSFATHLLNAGADIRTVQELLGHKNLATTQVYTHI-SKN---HLKKVYM 292

Query: 316 QTHP 319
           +THP
Sbjct: 293 KTHP 296


>gi|169830712|ref|YP_001716694.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637556|gb|ACA59062.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 300

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 152/309 (49%), Gaps = 26/309 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L  E+  S  TL +Y  D R    FL     E+I  +     +    R FI  +
Sbjct: 9   REFLRYLRAEKDASPETLAAYRSDLRPLEDFL---FRERIAPELANLTTPVLRRYFIWLQ 65

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +K+   SL+R +   +SF +YL +++      +  +R  K+ + +P  L E++    +
Sbjct: 66  EERKLKAASLRRKIHCFRSFFRYLAEQEYIPGDPMRKIRPPKEPDRVPIYLKEEE----L 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             +L    H       R+  IL+LL  CGLR SE L L   ++     TLR++GKG + R
Sbjct: 122 KWLLTAPGHLGGPYHLRDKLILHLLAYCGLRRSELLRLDWDDVDLGAGTLRVRGKGKRER 181

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRY 253
           ++PL+P +++ + EY         L  +LP     LF G  G  +N     R  ++  R 
Sbjct: 182 LIPLIPELQQILWEY---------LQTRLPLENRALFLGREGGRMNKDALTRLFKRYVRM 232

Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            GL P   T H LRHSFAT LL  G D+ +IQ ++GH  L++T+IY + +SK     + E
Sbjct: 233 AGLDPAVITPHKLRHSFATLLLEKGTDVFTIQELMGHADLASTRIYAHCSSKR----LRE 288

Query: 313 IYDQTHPSI 321
             ++  P I
Sbjct: 289 AVERIRPGI 297


>gi|89890184|ref|ZP_01201695.1| site-specific integrase/recombinase XerD protein [Flavobacteria
           bacterium BBFL7]
 gi|89518457|gb|EAS21113.1| site-specific integrase/recombinase XerD protein [Flavobacteria
           bacterium BBFL7]
          Length = 295

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 164/302 (54%), Gaps = 16/302 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  L  E+  S+ T+ +YE D  QF +FL    E  + IQ     SY  IR +++  
Sbjct: 4   KSYLDYLSFEKKYSQNTITAYEKDLEQFGLFLM--DEYDLEIQNA---SYPIIRTWLALL 58

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q++  R++ R ++ +KS+ K+L   +      + N ++LK S ++    ++++     
Sbjct: 59  LDQQLSSRTVNRKVAALKSYFKFLLLIEQIDYHPLSNHKSLKVSKNIQIPFSKQEV---- 114

Query: 139 DNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
              +L+ S++++  ++ R+  I+ L Y  G+R  E ++L  +N+     T+++ GK +K 
Sbjct: 115 -QQILNASYDSEDFESVRDLLIIELFYVTGVRREELINLRIENVNLLSRTIKVVGKRNKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R++P+L SV+  + E Y L    +  + +  LF   +G  L PG+  R I+     +   
Sbjct: 174 RLIPMLESVKFKV-EAYLLLKESIETDKRPELFVTRKGDKLYPGLVYRIIKSYFSKVSQK 232

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           + T+ H LRHSFATHLL  G DL +++ +LGH  L++TQ+YT+    +  + + E++   
Sbjct: 233 VKTSPHILRHSFATHLLDEGADLNAVKELLGHASLASTQVYTH----SSMEMLKEMHRNA 288

Query: 318 HP 319
           HP
Sbjct: 289 HP 290


>gi|260892475|ref|YP_003238572.1| integrase family protein [Ammonifex degensii KC4]
 gi|260864616|gb|ACX51722.1| integrase family protein [Ammonifex degensii KC4]
          Length = 304

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 96/304 (31%), Positives = 151/304 (49%), Gaps = 20/304 (6%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLA---FYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ E+G S  TL  Y+ D  + L F A      E +++ Q+I   + +  R F+     
Sbjct: 11  HLQTEKGASLRTLTEYQKDLLEGLSFFARLLGVAEAELSPQSI---TPSLFRRFLGYLHE 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   ++ R L+  +SF ++L +  I     +  +   K+   LPR L   +A  LV  
Sbjct: 68  RSLSRNTIARKLAAWRSFFRFLCREGILNADPLKLVSAPKREKRLPRVLYPHEAEALVTA 127

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                +    W   R+ A+L +LYG GLR+SE   L   ++  ++  LR+ GKG K RI 
Sbjct: 128 P--KGTDPKAW---RDRALLEVLYGAGLRVSEVEHLNLSDVDLERGELRVWGKGGKERIA 182

Query: 201 PLLPSVRKAILEYYDLC-PFDLNLNI----QLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            L P    A+ +Y +   P  L+       +  LF   RG+ L+    +  +       G
Sbjct: 183 LLHPLAVAALKDYLERGRPLLLSRRSRGEEEPALFLNHRGERLSARGIRLIVTSYAAKTG 242

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HT RHSFATHLL  G DLR++Q +LGH RL+TTQIYT ++ +     +  IY+
Sbjct: 243 VKGKVTPHTFRHSFATHLLDGGADLRTVQELLGHKRLATTQIYTRLSLER----IKHIYE 298

Query: 316 QTHP 319
           +THP
Sbjct: 299 KTHP 302


>gi|270264904|ref|ZP_06193168.1| DNA integration/recombination/invertion protein [Serratia odorifera
           4Rx13]
 gi|270041202|gb|EFA14302.1| DNA integration/recombination/invertion protein [Serratia odorifera
           4Rx13]
          Length = 299

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 152/303 (50%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER L++ TL SY  D +    +L       +  Q +      +++AF+++R
Sbjct: 10  EQFLDALWLERNLAENTLASYRLDLQALSAWLNHQNTSLLQAQAL------DLQAFLAER 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q     
Sbjct: 64  VAGGYKATSSARLLSAMRRLFQYLYREKLREDDPTALLASPKLPQRLPKDLSEAQV---- 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            + LL      + ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K R
Sbjct: 120 -DALLQAPCVDQPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKER 178

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       I  Y +   P+ +N      LF   R + +    F   I+      G+ 
Sbjct: 179 LVPLGEEAVYWIENYLEHGRPWMVNGQALDVLFPSNRCQQMTRQTFWHRIKHYAILAGID 238

Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q
Sbjct: 239 SERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQQ 294

Query: 317 THP 319
            HP
Sbjct: 295 HHP 297


>gi|257892241|ref|ZP_05671894.1| phage integrase [Enterococcus faecium 1,231,408]
 gi|257828620|gb|EEV55227.1| phage integrase [Enterococcus faecium 1,231,408]
          Length = 223

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 125/229 (54%), Gaps = 10/229 (4%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           +S ++ F ++L++ +IT    + ++   KK+  LP  L     LT V+  L+     TK 
Sbjct: 2   ISSLRRFHQFLRQERITDHDPMQHIDTPKKAQKLPSTLT----LTEVEK-LIEAPDTTKT 56

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           +  R+ AIL ++Y  G+R+SE + L   ++      ++  GKGDK RI+PL     + + 
Sbjct: 57  LGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGKGDKERIIPLGDYAIQWLE 116

Query: 212 EYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            Y D   P  +    ++ +F    GK L+     + ++QL R  G+    T HTLRHSFA
Sbjct: 117 RYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVREAGIYKEVTPHTLRHSFA 176

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           THLL NG DLR++Q +LGH  +STTQIYT++  K     M ++Y Q  P
Sbjct: 177 THLLENGADLRTVQELLGHADISTTQIYTHITKKR----MTDVYKQHFP 221


>gi|218708546|ref|YP_002416167.1| site-specific tyrosine recombinase XerD [Vibrio splendidus LGP32]
 gi|218321565|emb|CAV17517.1| Tyrosine recombinase xerD [Vibrio splendidus LGP32]
          Length = 320

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 100/305 (32%), Positives = 156/305 (51%), Gaps = 21/305 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF--YTEEKITIQTIRQLSYTEIRAFIS 76
           + +L  + +ERGLS+ TL SY  D  + L ++    Y  + I++  ++   Y    A   
Sbjct: 31  EQFLDAMWMERGLSENTLVSYRTDLSKLLTWMEKNNYRLDFISLSGLQ--DYQGWLADAD 88

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            ++T +       R LS I+   +YL + K+  +     + + K    LP+ L+E+Q   
Sbjct: 89  FKQTSR------ARMLSAIRRLFQYLHREKVRADDPSALLISPKLPKRLPKDLSEEQ--- 139

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
            VD+ LL        I+ R+ A+L LLY  GLR++E +SLT +NI   Q  +R+ GKG K
Sbjct: 140 -VDS-LLEAPDPNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGK 197

Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R+VP+  +    I  + +   P  L  N    +F   R K +    F   I+      G
Sbjct: 198 ERLVPMGENAVDWIETFIEQGRPQLLGDNSSDVVFPSKRAKQMTRQTFWYRIKHYSVIAG 257

Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           +     + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +I+
Sbjct: 258 IDTELLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIH 313

Query: 315 DQTHP 319
            Q HP
Sbjct: 314 AQHHP 318


>gi|171915713|ref|ZP_02931183.1| hypothetical protein VspiD_31120 [Verrucomicrobium spinosum DSM
           4136]
          Length = 297

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 146/301 (48%), Gaps = 15/301 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L  ERGLS     +Y+   R+ L   A +   +     I  ++   I  F+  R+ 
Sbjct: 8   FLLHLATERGLSV----NYQLLVRRVLETFASWLHREHDSDDIADVTTQHISGFLGHRKG 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +   SL+  L  +K F ++L  R          +   +   SLP  LNE +   L+++
Sbjct: 64  DGLIPSSLRVELVALKIFFRWLAARGRRLGDPAEPVLPPRVEQSLPDTLNEPEVRRLLES 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           V   T  E   +D R+ AIL + Y  GLRISE      +N+  ++  +R+ GKG+K R+V
Sbjct: 124 V---TGQEP--LDLRDRAILEIFYASGLRISEVTGARVENLSLEEGWVRVTGKGNKTRLV 178

Query: 201 PLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+  + R AI  Y D   P  +    +  +F    G  L      + +++     G+   
Sbjct: 179 PVGGAARDAISRYLDSARPQLVKPKTKSFIFLNRNGGQLTTARVWQIVKERAAAAGMDAD 238

Query: 260 TT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRHSFATHLL NG DLR IQ +LGH  ++TTQIYT+V+ K     + + + + H
Sbjct: 239 RIYPHLLRHSFATHLLGNGADLRVIQEMLGHADIATTQIYTHVDQKR----LKDTHRKFH 294

Query: 319 P 319
           P
Sbjct: 295 P 295


>gi|153805793|ref|ZP_01958461.1| hypothetical protein BACCAC_00029 [Bacteroides caccae ATCC 43185]
 gi|149130470|gb|EDM21676.1| hypothetical protein BACCAC_00029 [Bacteroides caccae ATCC 43185]
          Length = 316

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 152/286 (53%), Gaps = 13/286 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + Q L++E+ LS  TL++Y  D  + + FL   T E I +    ++  ++++ F +  
Sbjct: 18  RKYQQYLKLEKSLSPNTLEAYLTDLDKLMSFL---TLEGINVL---EVCLSDLQRFTAGL 71

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               I  RS  R LSGIKSF ++L             +   K    LP  L  ++   ++
Sbjct: 72  HDIGIHPRSQARILSGIKSFFRFLLMADYLEADPSELLEGPKIGFKLPEVLTVEEIDRII 131

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             V       +K    RN AIL  LY CGLR+SE ++L   ++  D+  ++++GKG K R
Sbjct: 132 SAV-----DRSKAEGQRNRAILETLYSCGLRVSELVNLKLSDLYFDEGFIKVEGKGSKQR 186

Query: 199 IVPLLP-SVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGL 256
           +VP+ P ++ +  L + D    ++    +  +F   R GK L+  +    I++L +  G+
Sbjct: 187 LVPISPRAINEIKLYFTDRNRIEVKKEYEDFVFVSQRRGKGLSRIMIFHMIKELAQTAGI 246

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++
Sbjct: 247 IKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHID 292


>gi|85702955|ref|ZP_01034059.1| tyrosine recombinase XerD [Roseovarius sp. 217]
 gi|85671883|gb|EAQ26740.1| tyrosine recombinase XerD [Roseovarius sp. 217]
          Length = 323

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 150/296 (50%), Gaps = 30/296 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+    E G +K TL +Y  D R F  ++ +   + +++  + Q    +I +++ +   
Sbjct: 11  FLEAQAAELGAAKNTLMAYARDLRDFTDWVKY---QNLSLDNLMQ---PDIESYLVQCDA 64

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q +   +  R LS I+   ++  + ++  ++  + ++   K+  LP+ L E +   L++ 
Sbjct: 65  QGLAPATRARRLSAIRQLYRFAFEERLRADNPAIRIKGPGKAQRLPKTLTEDEVGRLLEV 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
              H    T+    RN+ ++ LLY  G+R+SE +SL       D   L ++GKG K R+V
Sbjct: 125 APQHGRTATE--RCRNACLMALLYATGMRVSELVSLPLAAARGDPQMLLVRGKGGKERMV 182

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-----YIRQLRRYLG 255
           PL P  R A++++       L L       R  +G   +P +F       Y+ + R Y  
Sbjct: 183 PLSPPARTALVDW-------LALRDAEETARRSKGLAPSPFLFASGGTAGYLTRHRFYNL 235

Query: 256 L----------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +          P   T HTLRH+FATHLL+NG DLR IQ++LGH  ++TT+IYT+V
Sbjct: 236 IKEFAVKAHVDPEKVTPHTLRHAFATHLLANGADLRVIQTLLGHADIATTEIYTHV 291


>gi|218885871|ref|YP_002435192.1| integrase family protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756825|gb|ACL07724.1| integrase family protein [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 371

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 157/338 (46%), Gaps = 46/338 (13%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFL-------------------AFYTEEKITIQ 61
           +L +L +E+G +  T+ +Y  D  QF  FL                      +   +++ 
Sbjct: 2   FLVHLGMEKGYADATVTAYGTDMDQFAAFLEDEGDGPAIPGRPSLLNLNPAPSPAPLSLD 61

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           T   ++   ++ F+++   Q+I   S+ R LS +++F ++L + +  T      + N K+
Sbjct: 62  TPEHITKRHVQRFLAELHRQRIAKSSVARKLSALRAFFRFLLRLRRVTADPTAGVHNPKQ 121

Query: 122 SNSLPRALNEKQALTLVDN-----VLLHTSHETKWIDARN------------SAILYLLY 164
               P ALN  QA  L+D       L             +             A+  LLY
Sbjct: 122 DQRHPHALNVDQAFALLDERRQRKALATAHATAHAGHGTDFGPTDAALLARDLALAELLY 181

Query: 165 GCGLRISEALSLTPQNIMDDQST---LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           G GLR+SEAL L   N++D       +R+ GKG + R+ PL  + R A+  +  +     
Sbjct: 182 GSGLRVSEALEL---NVLDADPASGVVRVMGKGGRERMSPLSDTARDALSAWLAVRHQVD 238

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
               +  LF G RG  LN     R I  L    GLP + + H LRHSFATHLL  G DLR
Sbjct: 239 EGRGEPALFLGARGGRLNRRQAARIIETLCLRAGLPQAISPHGLRHSFATHLLEAGADLR 298

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           S+Q +LGH RLSTTQ YT++        ++++YD+ HP
Sbjct: 299 SVQELLGHARLSTTQRYTHLTLSR----LVDVYDRAHP 332


>gi|323143371|ref|ZP_08078059.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei
           YIT 12066]
 gi|322416889|gb|EFY07535.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei
           YIT 12066]
          Length = 297

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 154/302 (50%), Gaps = 20/302 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++   L +ERGL   ++ +Y  D  QF  +L     + + ++  +  S  +I  F++  +
Sbjct: 10  DFTDYLLLERGLLPKSITAYLSDLHQFFCYL-----DSVGVEPAK-FSSKDIEGFLASAK 63

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
             ++  RS  R L  +++F  +LK      +  +  + N K   SLP+ ++E      ++
Sbjct: 64  -DRLSARSTARFLCSMRAFSAFLKLENYRDDDPLSLIDNPKLPQSLPKIMSEATVDEFIN 122

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            +   T      +  R+ A+   +Y CGLR+SE ++LT  ++      L I+GKGDK R+
Sbjct: 123 AITTDTD-----VGLRDRAMFETVYSCGLRVSELVNLTFDSLNLVDGYLIIRGKGDKERL 177

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY---LGL 256
           VPL  +    I  Y        +   Q P +  + GK + P   + +  +++ Y   +GL
Sbjct: 178 VPLGDNAVWWIKRYLAEGRISKDPKNQCP-YVFLSGKGVGPLSREGFWYRVKYYASKIGL 236

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HT RH+FATHLL++  DLRS+Q +LGH  L+TTQIYT+V +      M EIY +
Sbjct: 237 SKAPSPHTFRHAFATHLLNHDADLRSVQLLLGHSSLTTTQIYTHVATAR----MHEIYKK 292

Query: 317 TH 318
            H
Sbjct: 293 AH 294


>gi|86147402|ref|ZP_01065715.1| tyrosine recombinase [Vibrio sp. MED222]
 gi|85834830|gb|EAQ52975.1| tyrosine recombinase [Vibrio sp. MED222]
          Length = 304

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 100/305 (32%), Positives = 156/305 (51%), Gaps = 21/305 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF--YTEEKITIQTIRQLSYTEIRAFIS 76
           + +L  + +ERGLS+ TL SY  D  + L ++    Y  + I++  ++   Y    A   
Sbjct: 15  EQFLDAMWMERGLSENTLVSYRTDLSKLLTWMEKNNYRLDFISLSGLQ--DYQGWLADAD 72

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            ++T +       R LS I+   +YL + K+  +     + + K    LP+ L+E+Q   
Sbjct: 73  FKQTSR------ARMLSAIRRLFQYLHREKVRADDPSALLISPKLPKRLPKDLSEEQ--- 123

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
            VD+ LL        I+ R+ A+L LLY  GLR++E +SLT +NI   Q  +R+ GKG K
Sbjct: 124 -VDS-LLEAPDPNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGK 181

Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R+VP+  +    I  + +   P  L  N    +F   R K +    F   I+      G
Sbjct: 182 ERLVPMGENAVDWIETFIEQGRPQLLGDNSSDVVFPSKRAKQMTRQTFWYRIKHYSVIAG 241

Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           +     + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +I+
Sbjct: 242 IDTDLLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIH 297

Query: 315 DQTHP 319
            Q HP
Sbjct: 298 AQHHP 302


>gi|325577298|ref|ZP_08147782.1| tyrosine recombinase XerD [Haemophilus parainfluenzae ATCC 33392]
 gi|325160880|gb|EGC73001.1| tyrosine recombinase XerD [Haemophilus parainfluenzae ATCC 33392]
          Length = 297

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 153/295 (51%), Gaps = 17/295 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           IE+GLS+ T+QSY  D      +L    ++ ++++T+  L   +++ F+  R  Q     
Sbjct: 16  IEKGLSENTVQSYRLDLTALCDWL---DKQNLSLETLDPL---DLQQFLGSRLEQGYKAT 69

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R LS ++   +YL + K  T+     + + K  + LP+ L E+Q   L     L+T 
Sbjct: 70  STARMLSAMRKLFQYLYREKYRTDDPSAVLNSPKLPSRLPKYLTEQQVTDL-----LNTP 124

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                ++ R+ A+L LLY  GLR++E ++LT +N+   Q  +R+ GKG+K RIVP+    
Sbjct: 125 DVEIPLELRDKAMLELLYATGLRVTELVTLTIENMNLQQGVVRVIGKGNKERIVPMGEEA 184

Query: 207 RKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHT 264
              + ++     P  LN      +F   R + +    F   I+       +     + H 
Sbjct: 185 AFWVRQFVLYGRPILLNGQSSDVVFPSQRAQQMTRQTFWHRIKHYAVLAEIDTDALSPHV 244

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++++ HP
Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER----LKHLHERFHP 295


>gi|257784507|ref|YP_003179724.1| integrase family protein [Atopobium parvulum DSM 20469]
 gi|257473014|gb|ACV51133.1| integrase family protein [Atopobium parvulum DSM 20469]
          Length = 305

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 148/306 (48%), Gaps = 20/306 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +++ L   R LS+ TL+SY+ D    L F  + + E + +    Q+ +  +R +++  
Sbjct: 12  EQFIEYLHKVRNLSENTLRSYQTD---LLSFAQWCSRENVDLT---QVDHKNLRLYLAYL 65

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +  +   ++L R LS ++ F K++++ K+      L + N +   +LP  + +       
Sbjct: 66  KQAQYSAKTLNRHLSALRGFYKWMQREKLIATDPALALSNPRAPRNLPHTMTDSDV---- 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            N LL +   +     R+ A L  LY  G RISE  +L  + +     T+R+ GKG K R
Sbjct: 122 -NRLLESCDVSTAAGLRDRAFLEFLYATGARISEVATLRLEQVDLQNGTVRLFGKGSKER 180

Query: 199 IVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           IVPL  S  + + +Y       L   D    +   LF  +RG  ++    ++        
Sbjct: 181 IVPLYESAIEWLKKYLRSSRPTLLLKDKTGRVHSALFISVRGNNMSADSLRKVFSSYLTA 240

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL  S + H +RH++AT LL  G DLR +Q +LGH  LSTTQ+YT+++     D + E 
Sbjct: 241 AGLDSSLSPHAMRHTYATELLGGGADLRIVQELLGHESLSTTQVYTHLSV----DRLKEA 296

Query: 314 YDQTHP 319
               HP
Sbjct: 297 AKAAHP 302


>gi|160884146|ref|ZP_02065149.1| hypothetical protein BACOVA_02123 [Bacteroides ovatus ATCC 8483]
 gi|156110488|gb|EDO12233.1| hypothetical protein BACOVA_02123 [Bacteroides ovatus ATCC 8483]
          Length = 319

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 95/293 (32%), Positives = 151/293 (51%), Gaps = 27/293 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + Q L++E+ LS  TL +Y  D  + + FL    +EK+ I  +     ++++ F +  
Sbjct: 18  RKYQQYLKLEKSLSPNTLDAYLTDLYKLINFL---EQEKVGILDV---CLSDLQHFAAGL 71

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               I  RS  R LSGIKSF ++L             +   K    LP  L  ++   ++
Sbjct: 72  HDIGIHPRSQARILSGIKSFFRFLIIEDYLEADPSELLEGPKIGFKLPEVLTVEEIDRII 131

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             V       +K    RN AIL  LY CGLR+SE ++L   ++  D+  ++++GKG K R
Sbjct: 132 SAV-----DRSKAEGQRNRAILETLYSCGLRVSELVTLKLSDLYFDEGFIKVEGKGSKQR 186

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI---------RGKPLNPGVFQRYIRQ 249
           +VP+ P   +AI E     P D N   Q+ + +G          RGK L+  +    I++
Sbjct: 187 LVPISP---RAINEIKLYIP-DRN---QIEVKKGHEDFVFVSQRRGKGLSRIMIFHMIKE 239

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           L    G+  + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++
Sbjct: 240 LAEKAGITKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHID 292


>gi|256832498|ref|YP_003161225.1| tyrosine recombinase XerD [Jonesia denitrificans DSM 20603]
 gi|256686029|gb|ACV08922.1| tyrosine recombinase XerD [Jonesia denitrificans DSM 20603]
          Length = 310

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 92/308 (29%), Positives = 151/308 (49%), Gaps = 19/308 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE-IRAFISK 77
           Q +LQ+L +ERG+S  TL +Y  D  ++L +L   +  ++++ ++ Q +  + + A    
Sbjct: 11  QGYLQHLLVERGVSPNTLAAYRRDLARYLDYL---SHRELSLHSVTQSTIDDFLVALREG 67

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q +   S+ R L+ ++   +Y +   +      +++R  K    LP  L+       
Sbjct: 68  SLGQSLSQSSVSRHLASLRGLHRYAEAEGVVAGDPAVSVRPPKLPQRLPDVLSTHDV--- 124

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGD 195
               LL T      +  R+ A+L  LY  G RISE + L   +++ D      R+ GKG 
Sbjct: 125 --ERLLTTPPLDSAVGLRDRALLEFLYATGARISEVVGLDRDDVIADDGFVVARVLGKGH 182

Query: 196 KIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R+VP+      A+  Y     P      +  P LF   RG+ L+       +R   R 
Sbjct: 183 KERLVPVGSCAYDALNAYLVRARPELAGAGVGTPALFLNTRGRRLSRQSAFGVVRSAARL 242

Query: 254 LGLP--LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             +P   S + HTLRH FATH+LS G D+R +Q +LGH  ++TTQIYT+V++    D + 
Sbjct: 243 AAIPGAESVSPHTLRHCFATHMLSGGADIRVVQELLGHASVTTTQIYTHVSA----DALR 298

Query: 312 EIYDQTHP 319
           E+Y  +HP
Sbjct: 299 EVYASSHP 306


>gi|238754564|ref|ZP_04615918.1| Tyrosine recombinase xerD [Yersinia ruckeri ATCC 29473]
 gi|238707195|gb|EEP99558.1| Tyrosine recombinase xerD [Yersinia ruckeri ATCC 29473]
          Length = 299

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 156/303 (51%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER L++ TL SY  D +    +L  + +  +    +      ++++F+++R
Sbjct: 10  EQFLDALWLERNLAENTLASYRLDLQALAGWLQRHNKSLLLADPL------DLQSFLAER 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++ F +YL + K+  +     + + K    LP+ L+E Q     
Sbjct: 64  IEGGYKATSSARLLSAMRRFFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQV---- 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            + LL++ +    ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K R
Sbjct: 120 -DALLNSPNVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKER 178

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       I  Y +   P+ +N      LF   R + +    F   I+      G+ 
Sbjct: 179 LVPLGEEAVYWIENYMEYGRPWLINGQALDVLFPSNRSQQMTRQTFWHRIKHYAILAGID 238

Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q
Sbjct: 239 SERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQQ 294

Query: 317 THP 319
            HP
Sbjct: 295 HHP 297


>gi|118473200|ref|YP_886852.1| site-specific tyrosine recombinase XerC [Mycobacterium smegmatis
           str. MC2 155]
 gi|166918888|sp|A0QVB4|XERC_MYCS2 RecName: Full=Tyrosine recombinase xerC
 gi|118174487|gb|ABK75383.1| tyrosine recombinase XerC [Mycobacterium smegmatis str. MC2 155]
          Length = 300

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 88/296 (29%), Positives = 144/296 (48%), Gaps = 10/296 (3%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +ERG S  T ++Y  D    L  L  + E++   +++ ++S   +R++++++      
Sbjct: 12  LGLERGHSDHTRRAYRGD----LTALFDFVEQRTGERSLARVSLPLLRSWLAEQSASGAA 67

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +L R  S +K+F  +  +R +        ++  K   +LP  L   QAL  +D V   
Sbjct: 68  RTTLARRTSSVKTFCAWALRRGLIGVDPAARLQVPKARRTLPAVLRRDQALDALDAVN-S 126

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            + E   I  R+  I+ LLY  G+R+SE   L   +I   +  +R+ GKG+K R VP   
Sbjct: 127 GAQEGDPIALRDRLIVELLYATGIRVSELCGLDIDDIDTSRRVVRVLGKGNKQRTVPFGE 186

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
               A+  +       L++    P L  G RG+ L+P   +  + Q    +        H
Sbjct: 187 PAHAALTAWLTEGRPQLSIPESGPALLLGARGRRLDPRQARTVVHQTVSAVNGAPDIGPH 246

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V  +     +  ++DQ HP
Sbjct: 247 GLRHSAATHLLEGGADLRIVQELLGHTSLATTQLYTHVTVER----LRAVHDQAHP 298


>gi|212633304|ref|YP_002309829.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella
           piezotolerans WP3]
 gi|212554788|gb|ACJ27242.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella
           piezotolerans WP3]
          Length = 304

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 158/323 (48%), Gaps = 45/323 (13%)

Query: 21  WLQNLE----IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           WL + E     ER +S  T+++Y  + ++     A   +         +L +  ++A I+
Sbjct: 12  WLIDFERYLTTERQVSAYTVRNYLFELKRVEAVFAANDD-------WLELKHESLQAIIA 64

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           K   + +  RSL  +LS IK F  +L + +  + +  LN+   K++  LP+ ++      
Sbjct: 65  KLHRKGLSPRSLSLTLSSIKQFFDFLLREQQISVNPALNLSAPKQAKPLPKNMDVDSVTH 124

Query: 137 LVDNVLLHTSHETKWIDA------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           L++            IDA      R+ AI+ L Y  GLR++E  +L   +I   Q+ +++
Sbjct: 125 LLE------------IDANDPLSYRDKAIMELFYSSGLRLAELAALNVTDIKFSQAQVKV 172

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            GKG K RIVP+      AI ++ D+     C  D        LF   +G+ L     Q 
Sbjct: 173 MGKGSKERIVPIGKLALTAISQWLDIKRDIPCEDD-------ALFVTAKGRRLAHRSIQA 225

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            + +  +   L +    H LRHSFATH+L +  DLR++Q +LGH  LSTTQ+YT+++ ++
Sbjct: 226 RLAKWGQEQALSVKVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQVYTSLDFQH 285

Query: 306 GGDWMMEIYDQTHPSITQKDKKN 328
               + ++YD  HP   ++  K+
Sbjct: 286 ----LAKVYDSAHPRAKKRGNKS 304


>gi|84496359|ref|ZP_00995213.1| tyrosine recombinase [Janibacter sp. HTCC2649]
 gi|84383127|gb|EAP99008.1| tyrosine recombinase [Janibacter sp. HTCC2649]
          Length = 299

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 143/303 (47%), Gaps = 10/303 (3%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++WL +L++ERGLS  TL++Y  D  ++  +L+    +     T R +S    R      
Sbjct: 2   RSWLTHLDVERGLSANTLKAYRRDLGRWTAYLSVVGIDDPAKVTERHVSEFLARLREGDE 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +   S  R+L  ++   K+L             +      + LP+A++  +   L+
Sbjct: 62  DHPALAANSAARTLVSVRGLHKFLALEGEVDADPAAAVSPPPPPSRLPKAISVSEVERLL 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +   +  +  +     R+ A+L LLYG G RISEA+ L   ++  D   +R++GKG K R
Sbjct: 122 NAAAVGDTPAS----LRDKALLELLYGTGARISEAVGLDIDDVDMDAGIVRLEGKGGKQR 177

Query: 199 IVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL    R A+  Y       F         +F   RG  L+       +R       L
Sbjct: 178 LVPLGSYARTALTAYLVRGRGTFSTKGKGTPAIFLNQRGSRLSRQSAWSILRAAAARADL 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQ+YT V  +     + E+Y Q
Sbjct: 238 SGHLSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTVQQ----LREVYAQ 293

Query: 317 THP 319
           +HP
Sbjct: 294 SHP 296


>gi|312130418|ref|YP_003997758.1| tyrosine recombinase xerd [Leadbetterella byssophila DSM 17132]
 gi|311906964|gb|ADQ17405.1| tyrosine recombinase XerD [Leadbetterella byssophila DSM 17132]
          Length = 296

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 156/313 (49%), Gaps = 29/313 (9%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E ++  +N+L+   +ERGL+  +++SY  D    L  LA + + K+   T+ +     + 
Sbjct: 5   EAIRAFKNYLK---LERGLAPNSVESYLRD----LGALASFLDGKVAPNTVEE---DHLY 54

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           AFI       +   +  R LSGIK+F ++L+  KI        +   K    LP  L  K
Sbjct: 55  AFIETISEMGLSSSTQARMLSGIKAFFEFLRLEKIRDTDPTALLVGPKLIRKLPEVLQVK 114

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L++ + L T   T     RN A+L +LY  GLR+SE ++L       ++  L+++G
Sbjct: 115 EVEALLEGIDLSTPEGT-----RNRAMLEVLYSSGLRVSEVVNLQISRCFFEEGYLQVRG 169

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLC------PFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           KG K R+VP    + K  + Y ++         D+    +  LF   RG  L+  +    
Sbjct: 170 KGSKTRLVP----IGKQAIHYTEIYKTLVRPSLDIKKGYEDHLFLNRRGAALSRVMVFYV 225

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           ++      G+  + + HTLRHSFATHL+  G DLR++Q +LGH  + TT+IYT+++    
Sbjct: 226 VKNAAEAAGIQKTISPHTLRHSFATHLVEGGADLRAVQEMLGHESILTTEIYTHLDRA-- 283

Query: 307 GDWMMEIYDQTHP 319
             ++ +   + HP
Sbjct: 284 --FLQQTLREFHP 294


>gi|256424447|ref|YP_003125100.1| tyrosine recombinase XerD [Chitinophaga pinensis DSM 2588]
 gi|256039355|gb|ACU62899.1| tyrosine recombinase XerD [Chitinophaga pinensis DSM 2588]
          Length = 316

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 151/304 (49%), Gaps = 29/304 (9%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKRRTQKI 83
           L++ER LS  ++++Y  D  + + +L     + + IQ    Q+S +++++ +    T  +
Sbjct: 31  LQLERSLSANSIEAYLRDVEKLVQYL-----QSVNIQPPPDQVSLSDLQSCVRWIATLGM 85

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
              S  R +SGIK+F +YL    +  +   + +   K    LP  L+ ++   ++  +  
Sbjct: 86  TATSQARIISGIKAFYRYLALEDVVRQDPTILLEAPKTKRQLPDVLSFEEIEQIIGQIKA 145

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
            T         RN AIL  +Y CGLR+SE  +L    +  D   +R+ GKGDK R+VP+ 
Sbjct: 146 GTPE-----GQRNRAILETMYSCGLRVSEVTNLQISQLHFDAGFIRVVGKGDKERLVPIG 200

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLP--------LFRGIRGKPLNPGVFQRYIRQLRRYLG 255
               K I  Y D       + + +P        LF   RG  L   +    I++L    G
Sbjct: 201 SDAVKYINIYKD------EVRVHVPVKKGQEDILFLNRRGSALTRVMIFLVIKELTAAAG 254

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + HT RHSFATHL+  G DLR++Q +LGH  ++TT+IYT+++     +++ +   
Sbjct: 255 IDKQVSPHTFRHSFATHLVEGGADLRAVQEMLGHESITTTEIYTHLDR----EYLRDTLQ 310

Query: 316 QTHP 319
           + HP
Sbjct: 311 RFHP 314


>gi|257055038|ref|YP_003132870.1| tyrosine recombinase XerC subunit [Saccharomonospora viridis DSM
           43017]
 gi|256584910|gb|ACU96043.1| tyrosine recombinase XerC subunit [Saccharomonospora viridis DSM
           43017]
          Length = 329

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 146/316 (46%), Gaps = 23/316 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-------------L 66
           ++  +L  ER LS+ T ++Y  D    L FL    E+     +  +             L
Sbjct: 18  DYEDHLRDERMLSQHTTRAYVGDVVSLLAFLHGVNEDGADGPSAHEEHPDGEHSDGVNGL 77

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
               +RA+++++        ++ R ++  ++F  +  +R +      + + + +    LP
Sbjct: 78  HVGVLRAWLARQHEAGCSRATVARRVASARTFTAWAYRRGLLPSDPGIRLASPRPHRRLP 137

Query: 127 RAL--NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
             L  +E   L  V      T H    +  R+ A++ LLY  G+RISE   L   ++  D
Sbjct: 138 GVLRMDEATELMRVSEAGTATGHP---VALRDHALIELLYATGVRISELCGLDIDDVDFD 194

Query: 185 QSTLRIQGKGDKIRIVPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           +  +R+ GKG K R+VP  LPS R   L      P     +    LF G RGK ++P   
Sbjct: 195 RRVVRVLGKGRKQRMVPFGLPSERALRLWLRQGRPEVATADSGAALFLGARGKRVDPRTV 254

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +R +      +        H LRHS ATH+L  G DLRS+Q +LGH  L+TTQ+YT+V  
Sbjct: 255 RRVVHDAVAAVPGAADIGPHGLRHSAATHMLDGGADLRSVQELLGHATLATTQLYTHVTV 314

Query: 304 KNGGDWMMEIYDQTHP 319
           +     +  I+DQTHP
Sbjct: 315 ER----LKAIHDQTHP 326


>gi|325963702|ref|YP_004241608.1| tyrosine recombinase XerC subunit [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469789|gb|ADX73474.1| tyrosine recombinase XerC subunit [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 308

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 145/320 (45%), Gaps = 15/320 (4%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ME   LP     EL      + + L  ER +S  TL+ Y  D R  L   +    +++  
Sbjct: 1   MENPELP----VELAGALDAFARYLAAERAVSPHTLRGYVGDVRGLLSHASIEGAKRL-- 54

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
                L     R ++  +        +L R  + ++ F  +    +       L ++  K
Sbjct: 55  ---EDLELGTFRRWLGAQSQAGAARTTLARRSASVRVFTAWALGEERIVADPALRLKAPK 111

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +  SLP  L+  Q   L+   L   + E   +  RN AI+ LLY  G+R+ E   L   +
Sbjct: 112 REASLPGVLHSGQLARLLAG-LAQAAEEGAPLALRNRAIVELLYATGVRVGELAGLDIDD 170

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLN 239
           +  D+ TLR+ GKG+K R VP       A+ ++     P          LF G+RG  ++
Sbjct: 171 LDPDRRTLRVIGKGNKERTVPYGVPAALAVDDWLRRGRPLVARSTSGQALFLGMRGGRVD 230

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               +  +  L + LG   ++  H LRHS ATHLL  G DLR++Q ILGH  L+TTQIYT
Sbjct: 231 QRQVRTMVNGLFKELGDTSASGPHALRHSAATHLLDGGADLRAVQEILGHSSLATTQIYT 290

Query: 300 NVNSKNGGDWMMEIYDQTHP 319
           +V+     D + + Y Q HP
Sbjct: 291 HVSV----DRLRKSYQQAHP 306


>gi|51892621|ref|YP_075312.1| recombinase [Symbiobacterium thermophilum IAM 14863]
 gi|51856310|dbj|BAD40468.1| recombinase [Symbiobacterium thermophilum IAM 14863]
          Length = 356

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 172/355 (48%), Gaps = 55/355 (15%)

Query: 2   EGNNL-PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA--------- 51
           +G++L PE+  F         L +L +E+  S+ TL+SY  D  QF  +LA         
Sbjct: 9   QGDSLGPEVAGF---------LASLSVEKSASQHTLRSYRLDLAQFYAWLASGGTTAPVV 59

Query: 52  ------------FYTEEK-----ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
                       F  +++     + +  +R +++  IR++++  + Q+   R++ R LS 
Sbjct: 60  GGRGSGRTRRHDFAAQQEEPVRPVGLDELRAVNHLTIRSYLAFLQRQEFSRRTIARKLSC 119

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           ++SF KYL +  +   + +  +   K    LP  L+E++   L+     HT      +  
Sbjct: 120 LRSFYKYLVRADLVPTNPVAGVHTPKLERRLPVFLDEEEIGGLLSQPDTHTP-----LGL 174

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A+L LLY  GLR+ E ++L   +I   +  + + GKG K R VP+     +A+  Y 
Sbjct: 175 RDRALLELLYATGLRVGELVALNRGDIDYSEGWVIVWGKGRKERAVPVGSEALQALGHYL 234

Query: 215 -DLCPF--------DLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            D  P         + +L   + PLF    G  L+    +R + +    L L    + H 
Sbjct: 235 RDGWPVLRARAPAAEQSLPEAKQPLFLNKLGGRLSDRSVRRLLDRYVSQLALSRQISPHK 294

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           +RH+FATH+L++G DLR++Q +LGH  LSTTQIYT+V ++     +   Y + HP
Sbjct: 295 IRHTFATHMLNHGADLRAVQEMLGHASLSTTQIYTHVTTQR----LRTEYLRAHP 345


>gi|258648906|ref|ZP_05736375.1| tyrosine recombinase XerD [Prevotella tannerae ATCC 51259]
 gi|260850938|gb|EEX70807.1| tyrosine recombinase XerD [Prevotella tannerae ATCC 51259]
          Length = 296

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 93/281 (33%), Positives = 144/281 (51%), Gaps = 15/281 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +E+GLS  T ++Y  D  + + FL    +E I I  ++     ++  F        I  R
Sbjct: 13  LEQGLSDNTREAYMHDVEKLIDFL---QQEGIDILNVK---LDDLHRFTEALTDVGIMAR 66

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S+ R LSG++SF  +L             + + K    LP  L+ ++    VD +L    
Sbjct: 67  SINRILSGVRSFYHFLLLEGYLEADPTQLLESPKVGAHLPTVLSIEE----VDALLAVID 122

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
             TK   AR+ AI+ +LY CGLR+SE   L   ++  D+  +RI GKG+K RIVP+ P  
Sbjct: 123 QSTKE-GARDHAIIEILYSCGLRVSELCFLMLSDLYLDEGFIRIIGKGNKQRIVPISPRA 181

Query: 207 RKAILEYYDLCPFDLNL---NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
            K  L+ + L   ++N+            +RGK L+       ++      G+  + + H
Sbjct: 182 VKE-LKNWLLIRHEINIKKGEEDYVFVSALRGKHLSRITVFHNLKVYAAEAGITKNISPH 240

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           TLRH+FATHLL  G +LR+IQ +LGH  LSTTQ+YTN++ +
Sbjct: 241 TLRHTFATHLLEGGANLRAIQMMLGHTDLSTTQVYTNIDRR 281


>gi|15966434|ref|NP_386787.1| site-specific tyrosine recombinase XerD [Sinorhizobium meliloti
           1021]
 gi|307318393|ref|ZP_07597828.1| tyrosine recombinase XerD [Sinorhizobium meliloti AK83]
 gi|34222988|sp|Q92ME3|XERD_RHIME RecName: Full=Tyrosine recombinase xerD
 gi|15075705|emb|CAC47260.1| Probable integrase/recombinase DNA recombination protein
           [Sinorhizobium meliloti 1021]
 gi|306896075|gb|EFN26826.1| tyrosine recombinase XerD [Sinorhizobium meliloti AK83]
          Length = 311

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 156/313 (49%), Gaps = 14/313 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ +  ERG +  TLQSYE D      FL      +     +   S  ++R+++S  
Sbjct: 10  EAFLEMMSAERGAAANTLQSYERDLEDARSFL------RSRGTGLTDASADDLRSYLSHL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R LS ++ F K+L    + T+     +   KK+ +LP+ L+ +    L+
Sbjct: 64  AGQGFKASSQARRLSALRQFYKFLYAEGLRTDDPTGILDAPKKARTLPKTLSIEDVTRLI 123

Query: 139 DNVLLHTSHETKWIDA--RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
                     +  + A  R  A++ LLY  G+R+SE +SL    +  +   L I+GKG+K
Sbjct: 124 GQAEAEAKSGSDDVMAKLRMHALIELLYATGMRVSELVSLPASVLAQNGRFLIIRGKGNK 183

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+VPL  +  +A+  Y +    +   +  L    G  G  L   VF R ++ L    G+
Sbjct: 184 ERLVPLSQAAIRAMRAYGEALQEESADSPWLFPSNGKSGH-LPRQVFARDLKSLAARAGI 242

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            ++  + H LRH+FA+HLL+NG DLR++Q +LGH  +STTQIYT+V  +     + ++  
Sbjct: 243 RVAAISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEER----LHDLVQ 298

Query: 316 QTHPSITQKDKKN 328
             HP   Q  K++
Sbjct: 299 NHHPLAKQAKKQD 311


>gi|329851121|ref|ZP_08265878.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19]
 gi|328839967|gb|EGF89539.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19]
          Length = 315

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 28/310 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +LQ + +ER  ++ TL +Y  D    +         K+T Q +  LS  ++  +    
Sbjct: 20  RQFLQMMAVERNAARPTLDAYGRDLDDLMATC------KVTPQGLLGLSDGDLAGYFQDL 73

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   SL+R  S ++ F ++     +T       +   KK   LP+ L+  +   L+
Sbjct: 74  SERGLASSSLQRKRSAVRQFYRFCVAENLTGHDPSRKIAAAKKGLKLPKILSRDEVDALI 133

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                   ++      R   ++ + Y  G+RISE + L    +  D + L I+GKG   R
Sbjct: 134 AAADAIAPNQA----VRLECLIEMAYASGMRISELVGLKLDAVARDPACLIIKGKGGVER 189

Query: 199 IVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +VPL PS R AI EY D+     P     N  L   RG  G      + +R + QL    
Sbjct: 190 LVPLNPSARAAIKEYLDIRYTFLPAGDKANPYLFSSRGKEGH-----LTRRRVGQLLDQA 244

Query: 255 GL-----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            +     P   + H LRH+FATHLL  G DLR +Q++LGH  +STTQIYT+V     G+ 
Sbjct: 245 AINAGIDPARVSPHVLRHAFATHLLEGGADLRVVQTLLGHADISTTQIYTHV----AGER 300

Query: 310 MMEIYDQTHP 319
           + E+ +  HP
Sbjct: 301 LREVVETHHP 310


>gi|121606322|ref|YP_983651.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
 gi|120595291|gb|ABM38730.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
          Length = 345

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 158/311 (50%), Gaps = 23/311 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  + +E+ L+  T++ Y  D  +     A   +  + +  ++   +T +R ++++  +
Sbjct: 22  YLAYVRVEKRLASRTVELYMADLEKLQ---ANARKAGVALTDVK---HTHLRRWVAQMHS 75

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +    R +   LSG + F  +L +  +   + + ++R+ K +  LP+AL+  +A+ L  +
Sbjct: 76  RGRSGRGIALILSGWRGFYTWLGREGLVPGNPVQDVRSPKIAKPLPKALSVDEAVQLA-S 134

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-------K 193
             L  +    +++AR+  I  LLYGCGLRISE + L  Q     +  + +QG       K
Sbjct: 135 FELEATDGDPFLEARDQCITELLYGCGLRISELVGLDAQASGKARGWIDMQGGDAHVLGK 194

Query: 194 GDKIRIVPLLPSVRKAILEYYDLC-----PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           G+K R VP+  +  K++ ++         P    +     LF   RG  L P   +  ++
Sbjct: 195 GEKRRSVPVGGAALKSLHKWLAARSLWARPGADGVQGGEALFINQRGSRLTPQHIRVRLK 254

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           Q  +  GL      H LRHSFA+H+L + GDLR++Q +LGH  ++TTQ YT ++ ++   
Sbjct: 255 QRSQQAGLATPVHPHMLRHSFASHVLQSSGDLRAVQELLGHASITTTQAYTRLDFQH--- 311

Query: 309 WMMEIYDQTHP 319
            + +IYD  HP
Sbjct: 312 -LAKIYDAAHP 321


>gi|21674453|ref|NP_662518.1| phage/XerD family site-specific recombinase [Chlorobium tepidum
           TLS]
 gi|34222894|sp|Q8KBZ5|XERC_CHLTE RecName: Full=Tyrosine recombinase xerC
 gi|21647640|gb|AAM72860.1| site-specific recombinase, phage/XerD family [Chlorobium tepidum
           TLS]
          Length = 336

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 157/321 (48%), Gaps = 29/321 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT-EEKITIQTIRQLSYTEIRAFISKR 78
            +L +LE  R +S  T+ +Y  D  QF  FL   +  ++++      +   ++R F+   
Sbjct: 22  EFLVHLESTRNVSAKTVTAYTTDLIQFFEFLTDESGHQEMSAVDPELVEVADVRRFMGDL 81

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               I  RS+ R L+ +KSF ++L        S +  +   +    +P  L+E++A  L 
Sbjct: 82  LDSGIKPRSIARKLASVKSFYRFLLDTGKIERSPLSLVLTPRLERKIPDFLSEEEASRLF 141

Query: 139 DNVLLHTSHET-----------KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           D ++L                 ++  AR+ A+L LLYGCGLR+SE   L   ++      
Sbjct: 142 DQLVLSDQESVGPEQGQKAAVQRFELARDRAVLELLYGCGLRLSEVTGLENADVDLVHGF 201

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCP-----FDLNLNIQLPLFRGIRGKPLNPGV 242
           L++ GKG K RIVP      +A+  Y+++                 +F   +G+ + P +
Sbjct: 202 LKVTGKGRKQRIVPFGEPAAEALRNYFEVRRNFFRILKEGAGETSKVFVTAKGRQIYPML 261

Query: 243 FQRYIRQLRRYLGLPLSTTA----HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            QR  +   RYL  P++ +A    H LRH+FATH+L+ G DL+S+  +LGH  L+TT++Y
Sbjct: 262 VQRMTK---RYLS-PVTESARKNPHMLRHTFATHMLNGGADLKSVSEMLGHSNLTTTELY 317

Query: 299 TNVNSKNGGDWMMEIYDQTHP 319
           T+V      + + + Y + HP
Sbjct: 318 THVTF----NRLRDAYTKAHP 334


>gi|118592100|ref|ZP_01549494.1| probable site-specific integrase/recombinase [Stappia aggregata IAM
           12614]
 gi|118435396|gb|EAV42043.1| probable site-specific integrase/recombinase [Stappia aggregata IAM
           12614]
          Length = 307

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 145/309 (46%), Gaps = 21/309 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N+L+ L  ERG ++ TL  Y  D   F  FL          +++      +I A++   
Sbjct: 8   ENFLEMLAAERGAAENTLAGYRRDLEDFSGFLGR--------KSLASAQSEDISAYLGDL 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +   + S  R LS +K F K+L       +     +   KK  SLP+ L+ +    L+
Sbjct: 60  NRRGFAETSQARRLSALKQFYKFLYAEGTREDDPTRTLSAPKKRASLPKVLSIEDVDRLI 119

Query: 139 DNVLLHTSHETKWIDARNSA-----ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           +     T    K   AR  A     ++ +LY  GLR+SE ++L     + D   + I+GK
Sbjct: 120 ETARAETERPRKSATARLRAQRMYTLIEVLYATGLRVSELVALPVTAALRDARLIEIKGK 179

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF--RGIRGKPLNPGVFQRYIRQLR 251
           G K R+VPL  + + A+ +Y  L   +        LF   G  G  L    F R ++ L 
Sbjct: 180 GGKERLVPLSRAAQAAMKDYVGLRAAEGAYEKSPWLFPSHGDSGH-LTRQHFARELKDLA 238

Query: 252 RYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              GL     + H LRH+FA+HLL NG DLR +Q +LGH  +STTQIYT+V  +     +
Sbjct: 239 VAAGLDAGKISPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDER----L 294

Query: 311 MEIYDQTHP 319
            E+ +  HP
Sbjct: 295 RELVESAHP 303


>gi|197122574|ref|YP_002134525.1| tyrosine recombinase XerD [Anaeromyxobacter sp. K]
 gi|196172423|gb|ACG73396.1| tyrosine recombinase XerD [Anaeromyxobacter sp. K]
          Length = 298

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 157/300 (52%), Gaps = 15/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L ++ +E+GL++ ++++Y  D R++L  L     +++ +    ++   EI+A +++   
Sbjct: 11  FLAHVRVEKGLAENSVEAYGRDLRRYLEHL-----DELGVDAWERVGRGEIQAHLAELVR 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  RS  R+LS I+S  + L   ++T+      + + +    LP  L+  +    VD 
Sbjct: 66  RGLSPRSQARALSAIRSLHRLLAAERVTSADPSDEIESPRPGRRLPGLLSHDE----VDR 121

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL           R+ A+L LLY  GLR+SE +SL   ++  +   L  +GKG+K RIV
Sbjct: 122 -LLAAPDVRSAAGIRDRAMLELLYATGLRVSELVSLQLNDVNLETRVLIARGKGNKERIV 180

Query: 201 PLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+     +A+  Y  +    L +      LF   RG  +    F + + +  R  G+   
Sbjct: 181 PVGAPAAEAVKAYLAVARERLLHGRRSKDLFVTPRGGRMTRQGFAKILDRCARRAGIRRR 240

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + H LRHSFATHLL  G DLR++Q +LGH  +STTQIYT+V+  +    +  +YD+ HP
Sbjct: 241 ISPHKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHVDRTH----VKRLYDRFHP 296


>gi|119775871|ref|YP_928611.1| integrase/recombinase XerD [Shewanella amazonensis SB2B]
 gi|119768371|gb|ABM00942.1| integrase/recombinase XerD [Shewanella amazonensis SB2B]
          Length = 321

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 98/301 (32%), Positives = 153/301 (50%), Gaps = 18/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L   +GLS  TL +Y  D  QF    AF T + I +  +  L+   +R +++ R  
Sbjct: 35  FLDELWSLQGLSDNTLSAYRTDLCQFD---AFLTAKGIGLLALDSLT---LRDYLAYRFE 88

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q +   S  R LS ++ F ++       +E     + + K   SLP +L+E Q    V+ 
Sbjct: 89  QGMAKTSTARMLSSLRRFYRHQLVSGTLSEDPTALIESPKLPKSLPGSLSEAQ----VEQ 144

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +L   S +   ++ R+ A+L LLY  GLR+SE + L    +   Q  +RI GKG K R+V
Sbjct: 145 LLAEPSSDDP-VECRDKAMLELLYATGLRVSELVGLGMSELGLRQGLVRIIGKGGKERLV 203

Query: 201 PLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           P+   V +  LE +   P  + L       +F   RG+ +    F   I+      G+  
Sbjct: 204 PM-GEVAQDALEQFLAGPRQMLLKQGATEVVFPSNRGQQMTRQTFWHRIKLYALRAGIST 262

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + +++++ H
Sbjct: 263 ELSPHTLRHAFATHLLNHGADLRVVQLLLGHSSLSTTQIYTHVARTR----LADLHEKHH 318

Query: 319 P 319
           P
Sbjct: 319 P 319


>gi|153214077|ref|ZP_01949211.1| tyrosine recombinase XerD [Vibrio cholerae 1587]
 gi|124115503|gb|EAY34323.1| tyrosine recombinase XerD [Vibrio cholerae 1587]
          Length = 302

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 156/304 (51%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  +  ERGL++ T+ SY  D  + L ++A   + +  +  I      E ++++S+ 
Sbjct: 13  EQFLDTMWFERGLAENTVASYRNDLSKLLEWMA---QNQYRLDFISFAGLQEYQSWLSE- 68

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R LS I+   +YL + K+  +     + + K    LP+ L+E Q     
Sbjct: 69  --QNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQV---- 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL        ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG K R
Sbjct: 123 -EALLSAPDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKER 181

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VP+  +  + I E +      L L  Q    +F   RG+ +    F   I+      G+
Sbjct: 182 LVPMGENAIEWI-ETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAAIAGI 240

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            +   + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + ++++
Sbjct: 241 DVEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHN 296

Query: 316 QTHP 319
           + HP
Sbjct: 297 EHHP 300


>gi|16272264|ref|NP_438476.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae Rd
           KW20]
 gi|260581222|ref|ZP_05849041.1| tyrosine recombinase XerD [Haemophilus influenzae RdAW]
 gi|1175025|sp|P44630|XERD_HAEIN RecName: Full=Tyrosine recombinase xerD
 gi|1573278|gb|AAC21974.1| integrase/recombinase (xerD) [Haemophilus influenzae Rd KW20]
 gi|260092147|gb|EEW76091.1| tyrosine recombinase XerD [Haemophilus influenzae RdAW]
          Length = 297

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 153/295 (51%), Gaps = 17/295 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           IE+GLS+ T+QSY  D      +L    +  ++++T   L   +++ F+ +R  +     
Sbjct: 16  IEKGLSENTVQSYRLDLTALCDWL---DKNDLSLET---LDAVDLQGFLGERLEKGYKAT 69

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R LS ++   +YL + K   +     + + K  + LP+ L E+Q      + LL+T 
Sbjct: 70  STARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQV-----SDLLNTP 124

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
           +    ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG+K RIVP+    
Sbjct: 125 NVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184

Query: 207 RKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHT 264
              + ++     P  LN      +F   R + +    F   ++       +     + H 
Sbjct: 185 AYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADALSPHV 244

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++++ HP
Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER----LKRLHERFHP 295


>gi|78043995|ref|YP_360612.1| tyrosine recombinase XerC [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996110|gb|ABB15009.1| tyrosine recombinase XerC [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 297

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 97/323 (30%), Positives = 155/323 (47%), Gaps = 36/323 (11%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +E + +L  L +ER  S  T+ +YE D   F  FL          ++   ++  +++ 
Sbjct: 1   MAEELKAFLNYLLLERNYSPNTIAAYERDILDFQEFLQG--------KSFLSVNEVDLKQ 52

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+     +    R+  R +  ++SF ++LK+     E+  L++   K   +LP  L   +
Sbjct: 53  FLVDILRKNRSRRTAARKMVALRSFYRFLKRCGFIKENPALSLEIPKIPKTLPEVLTVDE 112

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              +++         +     RN A+L L YG GLRI E   LT  ++   Q  +R+ GK
Sbjct: 113 VFKVIEG-----QENSTPTGLRNRALLELFYGAGLRIGEIAGLTLNDLDLTQGYVRVTGK 167

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL----NPGVFQRYIR- 248
           G + RIVPL           Y L    L L    P F+    K        G+  R IR 
Sbjct: 168 GRRQRIVPL---------GKYALDSLKLYLEAGRPAFKPKSEKLFLNQQGAGLTVRGIRY 218

Query: 249 ---QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
              Q+ +  GL    T HT RHS+ATHLL  G D+R++Q +LGH RLSTT+IYT+++   
Sbjct: 219 LISQIVKKAGLNRKITPHTFRHSYATHLLEGGADIRAVQELLGHKRLSTTEIYTHLSK-- 276

Query: 306 GGDWMMEIYDQTHPSITQKDKKN 328
             + + E+Y +THP    +++KN
Sbjct: 277 --ERLREVYLRTHPR--SREEKN 295


>gi|329296874|ref|ZP_08254210.1| tyrosine recombinase XerD [Plautia stali symbiont]
          Length = 297

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 159/306 (51%), Gaps = 23/306 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L  ER L++ TL SY  D +    +L  +       +T+  L   +++ F+++R
Sbjct: 8   EQFLDALWTERNLAQNTLASYRQDLQTLTAWLHHHE------RTLLSLEAADLQQFLAER 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R+LS ++   +YL + K+ ++     +   K    LP+ L+E Q    V
Sbjct: 62  IEGGYKATSSARTLSAMRRLFQYLYREKLRSDDPSALLSAPKLPQRLPKDLSENQ----V 117

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           + +L   + +   ++ R+ A+L LLY  GLR+SE + LT  ++   Q  +R+ GKG+K R
Sbjct: 118 ERLLQAPATDIP-LELRDKAMLELLYATGLRVSELVGLTLSDVSLRQGVVRVIGKGNKER 176

Query: 199 IVPLLPSVRKAI--LEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +VPL     +AI  LE+Y     P+ LN      LF   R + +    F   I+      
Sbjct: 177 LVPL---GEEAIYWLEHYMEHGRPWLLNGQTIDVLFPSNRAQQMTRQTFWHRIKHYATLA 233

Query: 255 GLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + ++
Sbjct: 234 GIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQL 289

Query: 314 YDQTHP 319
           + Q HP
Sbjct: 290 HQQHHP 295


>gi|49085926|gb|AAT51315.1| PA3738 [synthetic construct]
          Length = 299

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 146/300 (48%), Gaps = 16/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +E+GL+  T ++Y  D +QF    A+     + ++ I       I   ++ R  
Sbjct: 12  FLDALWLEKGLADNTREAYRNDLQQFN---AWLDGRGLRLEGI---GRDAILDHLAWRLE 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q    RS  R LSG++ F +Y  +  +  E   L +   +    LP++L+E         
Sbjct: 66  QGYKARSTARFLSGLRGFYRYCLRDGLIAEDPTLQVDLPQLGKPLPKSLSEADV-----E 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL        +  R+  +L +LY CGLR+SE + LT + +   Q  +++ GKG K R+V
Sbjct: 121 ALLAAPEVDDPLGLRDRTMLEVLYACGLRVSELVGLTLEQVNLRQGVVKVFGKGSKERLV 180

Query: 201 PLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           PL       +  Y      DL        LF  +RG+ +    F   I+   +   +  S
Sbjct: 181 PLGEEAIGWLERYLREARGDLLGGRPSDVLFPSLRGEQMTRQTFWHRIKHHAQVAAIGTS 240

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT++        + +++ + HP
Sbjct: 241 ISPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARAR----LQDLHARHHP 296


>gi|295111500|emb|CBL28250.1| Site-specific recombinase XerD [Synergistetes bacterium SGP1]
          Length = 308

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 97/309 (31%), Positives = 141/309 (45%), Gaps = 43/309 (13%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R  S+ TL +Y  D RQF  +L     E      +R +    +RA++           ++
Sbjct: 16  RSQSEHTLVNYASDLRQFAEYL-----EGCGASEVRSVEAPILRAYLRALFGWGYAKATV 70

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R LS ++SF  +LK+R +       N+R       +PRAL+E+    +V+ +       
Sbjct: 71  ARKLSSLRSFFAFLKERGVLERDPARNLRGPGAPRRIPRALSEE----VVERLFAAAGES 126

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
            + +  R++AIL +LYGCGLR+SE   L  +++  D+  L I GKG K R VP     ++
Sbjct: 127 EEAL--RDTAILEVLYGCGLRVSELTGLRWEDVDLDERWLIILGKGSKERRVPFGRCAQR 184

Query: 209 AILEYYD---LCPFDLNLNIQLPLFRGIRG---------------KPLNPGVFQRYIRQL 250
           A+        L PF         +F G  G               KP+      R +  L
Sbjct: 185 ALTALRGEQALGPF---------VFVGHEGAGSPGREGRRGRTGQKPVTVRTVHRVVTAL 235

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               GL    T H LRHS ATHLL +G  L+ +Q  LGH  L+TTQIY  V++     WM
Sbjct: 236 AARAGLE-GVTPHVLRHSCATHLLEHGASLKFVQEFLGHESLATTQIYLTVSA----SWM 290

Query: 311 MEIYDQTHP 319
            E Y   HP
Sbjct: 291 KESYAAAHP 299


>gi|149192204|ref|ZP_01870421.1| site-specific tyrosine recombinase XerD [Vibrio shilonii AK1]
 gi|148833962|gb|EDL50982.1| site-specific tyrosine recombinase XerD [Vibrio shilonii AK1]
          Length = 304

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 148/303 (48%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L ++ +ERGLS+ TL SY  D       L +  E    +  I      E + ++  +
Sbjct: 15  EQFLDSMWMERGLSENTLSSYRND---LFKLLKWMNEHNYRLDFISLSGLQEYQTWLMDQ 71

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q+    S  R LS I+   +YL + K+ ++     + + K    LP+ L E Q     
Sbjct: 72  NYQQ---SSRARMLSAIRRLFQYLHREKLRSDDPTALLVSPKLPKRLPKDLTEDQV---- 124

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL        I+ R+ A+L LLY  GLR++E +SLT +NI   Q  +R+ GKG+K R
Sbjct: 125 -TALLEAPDPNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGNKER 183

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+  +    I E+ +   P  L       +F   R + +    F   I+       + 
Sbjct: 184 LVPMGENAIDWISEFIEKGRPALLGDKTSDVVFPSKRARQMTRQTFWHRIKFYAVLADID 243

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     +  I+ Q
Sbjct: 244 TELLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKNIHSQ 299

Query: 317 THP 319
            HP
Sbjct: 300 HHP 302


>gi|299068373|emb|CBJ39597.1| site-specific tyrosine recombinase [Ralstonia solanacearum CMR15]
          Length = 329

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 158/325 (48%), Gaps = 39/325 (12%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L+ ER LS+ TL SY    R+  +           I  + QL    IR  +++   
Sbjct: 23  YLDALKFERKLSEHTLASY---ARELAVLQQLGARFAAGIDPM-QLQPHHIRRMMAQLHG 78

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS-NSLPRALNEKQALTLVD 139
             +  RS+ R+LS  + + K+L  R     +N ++  +  KS   LP+AL+ +QA+ L++
Sbjct: 79  GGLSGRSIARALSAWRGWYKWLALRDAAVTANPVDGIHAPKSPKRLPKALSVEQAVALME 138

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQST---------L 188
           ++      + + +  R+ A+  L Y CGLR+SE   L L      D  S          +
Sbjct: 139 HL---PGDDPEAV--RDRAVNELFYSCGLRLSELVGLDLRHAKAGDYASASWLDLEAREV 193

Query: 189 RIQGKGDKIRIVPL---------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
            + GKG+K R +P+              +A L   D  P D +      LF   RGK L 
Sbjct: 194 TVLGKGNKRRTLPVGSKAAEALAAWLAVRAQLAPPDAAPEDAHA-----LFLSARGKRLT 248

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               Q  +++     G+P     H LRHSFATH+L + GDLR++Q +LGH  +++TQ+YT
Sbjct: 249 QRQIQTRMKRNAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT 308

Query: 300 NVNSKNGGDWMMEIYDQTHPSITQK 324
           +++ ++    + +IYDQ HP   +K
Sbjct: 309 SLDFQH----LAKIYDQAHPRAKKK 329


>gi|219669469|ref|YP_002459904.1| tyrosine recombinase XerD [Desulfitobacterium hafniense DCB-2]
 gi|219539729|gb|ACL21468.1| tyrosine recombinase XerD [Desulfitobacterium hafniense DCB-2]
          Length = 322

 Score =  125 bits (315), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 93/320 (29%), Positives = 153/320 (47%), Gaps = 29/320 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ERGLS  T  SYE D R+F  FL    +  I  +        ++  F+ + 
Sbjct: 10  KKYLSYLNVERGLSPNTRNSYERDLRKFTAFLQQRGKNIIACEG------NDLFLFLLQE 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + Q    R+L R L+ ++ F  +L   ++  +     +   K    LP  L+E     L+
Sbjct: 64  KNQGRSARTLARYLATLRGFFAFLLGEEMREDDPTEYLSTPKLEQHLPHVLSEGSISKLM 123

Query: 139 DNVL------------------LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                                   +  + K +  RN A++ +LYGCGLR+SE + L   +
Sbjct: 124 GEGGDRDKEGPKPGKSSKKAGDSDSEGKDKGLLMRNMAMIEVLYGCGLRVSELVGLKVSD 183

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLN 239
           I+ +  TLR +GKG+K RIVP+     + +  Y +     L    +   LF   RG  L 
Sbjct: 184 IIFETRTLRCRGKGNKERIVPIGEYALEVLQNYLEHDRERLRGKHKTEVLFLNSRGTALT 243

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                  +++  +  G+  +   H  RHSFATHLL +G DLRS+Q +LGH  ++TTQIYT
Sbjct: 244 RQGIWDILKKWAQTHGVQENIYPHKFRHSFATHLLDHGADLRSVQEMLGHADIATTQIYT 303

Query: 300 NVNSKNGGDWMMEIYDQTHP 319
           +++ +     ++E++ + HP
Sbjct: 304 HLSRQR----LLEVFRKAHP 319


>gi|331269460|ref|YP_004395952.1| tyrosine recombinase XerD [Clostridium botulinum BKT015925]
 gi|329126010|gb|AEB75955.1| tyrosine recombinase XerD [Clostridium botulinum BKT015925]
          Length = 292

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 154/295 (52%), Gaps = 19/295 (6%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +++ LSK T+++Y+ D  +F  FL    E+      I       I A++   + ++  D 
Sbjct: 13  LKKELSKNTIEAYKRDLIKFGEFLNKRHED------ILDSDMVSIMAYVQTLKKERKADS 66

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--LLH 144
           S+ RSL  I++F K+L K     ++ ++N    K   +LP  L        VD V   L 
Sbjct: 67  SIIRSLVAIRNFYKFLIKTGQNIDNPLINYEVPKNKRTLPETLT-------VDEVDKFLS 119

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
                ++   R+ A+L L+Y  G+++SE L +T  ++    S ++ +G  DK RI+P+  
Sbjct: 120 APDCNEYKGIRDKAMLELMYATGMKVSELLRITIFDVNLKLSYIKCKGAKDKERIIPIGS 179

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
                + EY  +       N++L LF  +RG  +    F + +++  +   +     ++T
Sbjct: 180 YAVNCLNEYLKVRDRMNADNLEL-LFCNLRGGKMTRQGFWKIVKKYAKDANINKKIDSYT 238

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           LRHSFA HLL NG D++S+Q +LGH  ++TTQIY++++ KN    ++++Y + HP
Sbjct: 239 LRHSFAVHLLQNGADMKSVQELLGHNTIATTQIYSSISKKNK---IVDVYKKAHP 290


>gi|311739716|ref|ZP_07713551.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311305532|gb|EFQ81600.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 305

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 141/291 (48%), Gaps = 19/291 (6%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RG ++ T++ Y  D R              ++ T  +     +R ++++  T+     +L
Sbjct: 32  RGRAEATVRGYRADLRDL----------ARSVPTFAEFDLNSLRQWLAEAVTEGKSRSTL 81

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R  +  K F  +  +           +   K    LP  L  +QA  L+ N +  ++ E
Sbjct: 82  ARRTAAAKGFSTWAVREGHLKRDVAARLVTPKVGRHLPTVLAPEQAGELMGNAV--SADE 139

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
             ++  R+SAIL LLY  G+R++E + L   +I   + TL + GKG+K R+VP   +   
Sbjct: 140 VHFL--RDSAILELLYASGMRVAELVRLDLGDIDFQRGTLHVTGKGNKQRVVPFGHAAED 197

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           A+ ++ D    ++       +F G RG  ++    +R + +  +  G     T H +RHS
Sbjct: 198 ALKQWIDKGRGEIASAETEAVFVGSRGGRIDQRQVRRIVEKAAKVTGAQ-GLTPHGVRHS 256

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            ATHLL  G DLR +Q +LGH  L+TTQIYT+V+++     +  +YDQ HP
Sbjct: 257 AATHLLEGGADLRVVQELLGHSSLNTTQIYTHVSAQR----LQRVYDQAHP 303


>gi|114320644|ref|YP_742327.1| tyrosine recombinase XerD [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227038|gb|ABI56837.1| tyrosine recombinase XerD [Alkalilimnicola ehrlichii MLHE-1]
          Length = 304

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 158/306 (51%), Gaps = 16/306 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L E + +L  L +E+GL + TL +Y  D    L F  +   +  ++ + R+    ++ A+
Sbjct: 12  LAELEAFLDALWMEQGLGERTLSAYRSD---LLGFQRWLGGQGGSLLSARR---DQVLAY 65

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +  R  Q    RS+ R L+ ++ F +Y  +     E    ++ + +    LP  L+E + 
Sbjct: 66  LGGRLGQGAKPRSVARLLTSLRRFYRYQLREGRVAEDPTRDVESPRLGRPLPGGLSESE- 124

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
              V+ +L     ET  +  R+  +L +LY  GLR+SE + L+   +   Q  +R+ GKG
Sbjct: 125 ---VERLLAAPDPETP-LGQRDRCMLEVLYASGLRVSELVGLSLSELSLSQGLVRVVGKG 180

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            + R+VPL  +  + + ++  +  P  L   +   +F   RG+ L    F   +++  R 
Sbjct: 181 GRERLVPLGETALEQVQQWLREGRPALLGRRVSDAVFVTGRGEGLTRQAFWYRVKKHARS 240

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +G+    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V  +     +  +
Sbjct: 241 VGITRPISPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARQR----LQTL 296

Query: 314 YDQTHP 319
           + + HP
Sbjct: 297 HAEHHP 302


>gi|319897879|ref|YP_004136076.1| site-specific tyrosine recombinase [Haemophilus influenzae F3031]
 gi|329122492|ref|ZP_08251077.1| site-specific tyrosine recombinase XerC [Haemophilus aegyptius ATCC
           11116]
 gi|317433385|emb|CBY81765.1| site-specific tyrosine recombinase [Haemophilus influenzae F3031]
 gi|327473182|gb|EGF18604.1| site-specific tyrosine recombinase XerC [Haemophilus aegyptius ATCC
           11116]
          Length = 299

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 154/308 (50%), Gaps = 25/308 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L IER +S  T+ +Y+      +  LA     +  I    Q++ + +R  +++ + Q + 
Sbjct: 12  LRIERQMSPHTITNYQHQLDATIKILA-----QQDIHAWTQVTPSVVRFILAESKKQGLK 66

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           ++SL   LS ++ FL +L ++     +    +   K+   LP+ ++ +Q    V  +L +
Sbjct: 67  EKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGKHLPKNMDGEQ----VQQLLAN 122

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            S E   ID R+ AIL L+Y  GLR+SE   L   +I      +R+ GKG+K R+VP   
Sbjct: 123 DSKEP--IDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGR 180

Query: 205 SVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
               AI E+  +     P D        LF    G  ++    Q+ +       GL    
Sbjct: 181 YASHAIQEWLKVRALFNPKDE------ALFVSQLGNRISHRAIQKRLETWGIRQGLNSHL 234

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
             H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    + E+YDQ HP 
Sbjct: 235 NPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LSEVYDQAHPR 290

Query: 321 ITQKDKKN 328
             +K +K+
Sbjct: 291 AKRKKQKS 298


>gi|163803381|ref|ZP_02197257.1| tyrosine recombinase [Vibrio sp. AND4]
 gi|159172843|gb|EDP57685.1| tyrosine recombinase [Vibrio sp. AND4]
          Length = 305

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 154/305 (50%), Gaps = 21/305 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA--FYTEEKITIQTIRQLSYTEIRAFIS 76
           + +L  + +ERGLS+ TL SY  D  + L+++    Y    I++  +++  Y      + 
Sbjct: 16  EQFLDAMWMERGLSENTLASYRNDLMKLLVWMEQHCYHLSFISLSGLQE--YQSYLVDLD 73

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            ++T +       R LS I+   +Y+ + K+ ++     + + K    LP+ ++E+Q   
Sbjct: 74  YKQTSR------ARMLSAIRRLFQYIHREKVRSDDPSALLVSPKLPQRLPKDISEEQV-- 125

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
              + LL        I+ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG K
Sbjct: 126 ---DALLDAPDPNDPIELRDKAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGGK 182

Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R+VP+  +    I  +     P  L       +F   R + +    F   I+      G
Sbjct: 183 ERLVPMGENAVDWIETFIKQGRPALLGEKTSDVVFPSKRARQMTRQTFWHRIKHYAVIAG 242

Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           +     + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +I+
Sbjct: 243 IDTGHLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIH 298

Query: 315 DQTHP 319
            Q HP
Sbjct: 299 SQHHP 303


>gi|149376980|ref|ZP_01894734.1| tyrosine recombinase XerC [Marinobacter algicola DG893]
 gi|149358757|gb|EDM47227.1| tyrosine recombinase XerC [Marinobacter algicola DG893]
          Length = 317

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 155/303 (51%), Gaps = 24/303 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L  E+  S  T  SY  D ++F +++     E       R ++  ++R ++++   
Sbjct: 21  FLRYLASEKRHSPRTCDSYRDDLKRFAVWV-----EHQPSPAWRSVTSHDLRRYVAQLSR 75

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +G RS+ R LS I+ F +YL +  +  ++  L++R  K    LPR  +  Q   L+D 
Sbjct: 76  EGLGGRSIARHLSAIRRFYEYLLREHLAVDNPALDIRAPKSGKRLPRVADVDQLNHLLDA 135

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                      ++ R+ ++  L+Y  GLR+SE   L  Q++      +R+ GKG K R++
Sbjct: 136 A------PDDPLEIRDLSMFELMYSSGLRLSELAGLDLQSVDVRGGEVRVLGKGRKERLL 189

Query: 201 PLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           P+     +A+ ++ +    + P   N      L+   RG  L+    Q  + +     G 
Sbjct: 190 PVGRRALEALAQWLEVRGAMAPDGENA-----LYVSRRGDRLSTRSIQSRLSRWGMSKGA 244

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRHSFA+H+L + GDLR++Q +LGH  ++TTQ+YT+++ ++    + ++YDQ
Sbjct: 245 DQRLHPHLLRHSFASHMLESSGDLRAVQELLGHADIATTQVYTHLDFQH----LAKVYDQ 300

Query: 317 THP 319
           +HP
Sbjct: 301 SHP 303


>gi|225181363|ref|ZP_03734807.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
 gi|225167944|gb|EEG76751.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
          Length = 299

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 153/307 (49%), Gaps = 23/307 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L++E+  S  T+++Y  D  QF  FL     EK      + L Y  IR F++  +
Sbjct: 7   SFLTFLQVEKNASPHTIRNYAEDLGQFFQFL-----EKEGASFPQDLDYLAIRHFLALMQ 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                 R++ R L+ I+SFL++L +     +++   +   +    LP+ L        VD
Sbjct: 62  AHGYERRTIARKLAAIRSFLRHLNREGYLADTSWTTISTPRIGKKLPKFL-------YVD 114

Query: 140 NV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            V  LL           R+ AIL  LY  G+R+SE ++L  Q++  ++    + GKG   
Sbjct: 115 EVFRLLAAPDSQTPAGLRDVAILEFLYSSGVRVSELVALELQSLDLNRGQAIVMGKGGCE 174

Query: 198 RIVPLLPSVRKAILEYYDLC-PFDLNLNI----QLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           R+V L    R+++L Y +   P  L  N     +  L+    G  L+    +R + +  R
Sbjct: 175 RLVHLGRFARRSLLAYLEQGRPEILRKNADGDREGALWLNKYGTRLSDRGVRRIVEKYVR 234

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            + L    + H++RHSFATHLL+ G DLR +Q +LGH  +STTQIYT++      D + E
Sbjct: 235 QVSLAKGISPHSIRHSFATHLLNAGADLRVVQELLGHVNISTTQIYTHITR----DQLKE 290

Query: 313 IYDQTHP 319
           +Y+  HP
Sbjct: 291 VYNGAHP 297


>gi|322831506|ref|YP_004211533.1| tyrosine recombinase XerD [Rahnella sp. Y9602]
 gi|321166707|gb|ADW72406.1| tyrosine recombinase XerD [Rahnella sp. Y9602]
          Length = 319

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 154/303 (50%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L IER L++ TL SY  D +  L +L     + + +      S  +++ F+S+R
Sbjct: 30  EQFLDMLWIERNLAENTLSSYRQDLKSLLGWLHHNNTDLLHV------SAEDLQLFLSER 83

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +Y+ +  +  +     + + K    LP+ L+E Q    V
Sbjct: 84  IEGGYKATSSARLLSAMRRLFQYMNRESVRQDDPTALLSSPKLPQRLPKDLSEAQ----V 139

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D +L   S +   ++ R+ A+L LLY  GLR+SE + LT  ++   Q  +R+ GKG+K R
Sbjct: 140 DALLASPSVDVP-LELRDKAMLELLYATGLRVSELVGLTLSDLSLRQGVVRVIGKGNKER 198

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+       I  Y++   P+ LN      +F   R + +    F   I+      G+ 
Sbjct: 199 LVPMGEEAVYWIENYFEHGRPWLLNGQSLDVVFPSNRAQQMTRQTFWHRIKHYAILAGID 258

Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  ++ Q
Sbjct: 259 AERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKLLHQQ 314

Query: 317 THP 319
            HP
Sbjct: 315 HHP 317


>gi|322834929|ref|YP_004214956.1| tyrosine recombinase XerC [Rahnella sp. Y9602]
 gi|321170130|gb|ADW75829.1| tyrosine recombinase XerC [Rahnella sp. Y9602]
          Length = 303

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 156/303 (51%), Gaps = 21/303 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L +ER LS LT  +Y   +RQ    +A   E  I I   +QL   ++R  +++ 
Sbjct: 13  EAFLRYLHVERQLSPLTTTNY---SRQLEALIAISGE--IGISHWQQLDAPKVRMLLARS 67

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +   +G  SL   +S ++SFL +L ++ + + +    +   +    LP+ L+  +   L+
Sbjct: 68  KRAGLGPSSLALRMSSLRSFLDWLVRQGVLSANPAKGISTPRSPKHLPKNLDVDEVNKLL 127

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D  L         +  R+ A+L ++YG GLR+SE + +  ++I      +R+ GKG K R
Sbjct: 128 DIDL------NDPLSVRDRAMLEVMYGGGLRLSELVGIDCKHIDMASGEVRVLGKGSKER 181

Query: 199 IVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            VP+    R A+  LE++     D N      +F   +G  ++    Q+   +     G+
Sbjct: 182 KVPI---GRTAVIWLEHWLERRADFNPQDD-AMFLSSKGSRISARNVQKRFAEWGVKQGV 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++    +  +YD 
Sbjct: 238 NSHIHPHKLRHSFATHVLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LATVYDA 293

Query: 317 THP 319
            HP
Sbjct: 294 AHP 296


>gi|15598933|ref|NP_252427.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa
           PAO1]
 gi|107103253|ref|ZP_01367171.1| hypothetical protein PaerPA_01004322 [Pseudomonas aeruginosa PACS2]
 gi|116051736|ref|YP_789425.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218889984|ref|YP_002438848.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa
           LESB58]
 gi|254236648|ref|ZP_04929971.1| integrase/recombinase XerD [Pseudomonas aeruginosa C3719]
 gi|254242429|ref|ZP_04935751.1| integrase/recombinase XerD [Pseudomonas aeruginosa 2192]
 gi|296387753|ref|ZP_06877228.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa
           PAb1]
 gi|313109145|ref|ZP_07795116.1| integrase/recombinase XerD [Pseudomonas aeruginosa 39016]
 gi|34223067|sp|Q9HXQ6|XERD_PSEAE RecName: Full=Tyrosine recombinase xerD
 gi|9949906|gb|AAG07125.1|AE004793_2 integrase/recombinase XerD [Pseudomonas aeruginosa PAO1]
 gi|115586957|gb|ABJ12972.1| integrase/recombinase XerD [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126168579|gb|EAZ54090.1| integrase/recombinase XerD [Pseudomonas aeruginosa C3719]
 gi|126195807|gb|EAZ59870.1| integrase/recombinase XerD [Pseudomonas aeruginosa 2192]
 gi|218770207|emb|CAW25969.1| integrase/recombinase XerD [Pseudomonas aeruginosa LESB58]
 gi|310881618|gb|EFQ40212.1| integrase/recombinase XerD [Pseudomonas aeruginosa 39016]
          Length = 298

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 146/300 (48%), Gaps = 16/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +E+GL+  T ++Y  D +QF    A+     + ++ I       I   ++ R  
Sbjct: 12  FLDALWLEKGLADNTREAYRNDLQQFN---AWLDGRGLRLEGI---GRDAILDHLAWRLE 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q    RS  R LSG++ F +Y  +  +  E   L +   +    LP++L+E         
Sbjct: 66  QGYKARSTARFLSGLRGFYRYCLRDGLIAEDPTLQVDLPQLGKPLPKSLSEADV-----E 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL        +  R+  +L +LY CGLR+SE + LT + +   Q  +++ GKG K R+V
Sbjct: 121 ALLAAPEVDDPLGLRDRTMLEVLYACGLRVSELVGLTLEQVNLRQGVVKVFGKGSKERLV 180

Query: 201 PLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           PL       +  Y      DL        LF  +RG+ +    F   I+   +   +  S
Sbjct: 181 PLGEEAIGWLERYLREARGDLLGGRPSDVLFPSLRGEQMTRQTFWHRIKHHAQVAAIGTS 240

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT++        + +++ + HP
Sbjct: 241 ISPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARAR----LQDLHARHHP 296


>gi|317508798|ref|ZP_07966443.1| tyrosine recombinase XerD [Segniliparus rugosus ATCC BAA-974]
 gi|316252907|gb|EFV12332.1| tyrosine recombinase XerD [Segniliparus rugosus ATCC BAA-974]
          Length = 340

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 159/335 (47%), Gaps = 35/335 (10%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + S +L ++ +++L +L +ERG SK T+ SY  D  +++ FL      + +   + Q++ 
Sbjct: 15  LTSDKLSEQVKSYLDHLTVERGASKHTVSSYRRDLDRYMDFL-----RERSATDLAQVTS 69

Query: 69  TEIRAFISKRRTQK---IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
            +I  F++  R  +   +   S  R LS ++   K+     +  +     ++  +    L
Sbjct: 70  AQIAEFLAWSRDPEGMGLAQSSAARGLSAVRGLHKFAVLEGMAAQDAAHGVKPPQPGRRL 129

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P+AL   Q + +++   +  S        R++A+L L+Y  G R+SEA+ L   ++    
Sbjct: 130 PKALPVDQVIAIIEASGMADSESDIPRALRDAALLELMYCTGCRVSEAVGLNLLDVDFQA 189

Query: 186 STLRIQGKGDKIRIVPLL-PSVRKAILEYYDLCPFDLNLNIQLP---------------- 228
            + R+ GKGDK R+VPL  P+V  A L+ Y +      L  ++P                
Sbjct: 190 RSARVLGKGDKERLVPLGGPAV--AALDAYLVRGRPALLAARIPRGSASRSYSREAPPGK 247

Query: 229 ----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
               LF   RG+  +       +R      G+    + HTLRHS ATHLL  G D+R +Q
Sbjct: 248 ATNALFLNARGERFSRQSTWASLRHAAAKAGVKAEISPHTLRHSCATHLLEGGADVRVVQ 307

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            +LGH  + TTQIYT V++      + E+Y   HP
Sbjct: 308 ELLGHASVVTTQIYTMVSATT----LREVYATAHP 338


>gi|288553072|ref|YP_003425007.1| integrase/recombinase [Bacillus pseudofirmus OF4]
 gi|288544232|gb|ADC48115.1| integrase/recombinase [Bacillus pseudofirmus OF4]
          Length = 321

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 148/308 (48%), Gaps = 25/308 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +++ +++E+  S  T++SY  D   F  F+     ++        ++Y  +R++++  
Sbjct: 30  QMFVRYMQVEKNYSLHTVKSYLSDIEDFCHFM-----KEHNCAAFSDVTYLFVRSYLTFL 84

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S+ R +S ++S   +L + +  T +        K+++ LP  L E++   L 
Sbjct: 85  YDKAYARNSVARKISSMRSLFHFLMREEELTRNVFAETHLPKQASKLPSFLYEEEMDELF 144

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                +T      +D R+ AIL LLY  G+R+ E   L   +I     T  ++GKG+K R
Sbjct: 145 KAFEGNTP-----LDKRDRAILELLYATGMRVGECSQLDVADIDLRIGTAFVKGKGNKER 199

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNI-------QLPLFRGIRGKPLNPGVFQRYIRQLR 251
            VP+      A+ EY +    D  +N+          LF   RG PL     +R + +  
Sbjct: 200 YVPIGSFACDALHEYIE----DARVNLLKKGNSETKRLFLNYRGGPLTDRSIRRMLAKRV 255

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               +      H LRHSFATHLL+NG DLR +Q +LGH  LSTTQ+YT+V      D + 
Sbjct: 256 EEASMQKHIRPHDLRHSFATHLLNNGADLRVVQELLGHEHLSTTQVYTHVTK----DRLR 311

Query: 312 EIYDQTHP 319
           E+Y   HP
Sbjct: 312 EVYKNHHP 319


>gi|145635531|ref|ZP_01791230.1| tyrosine recombinase [Haemophilus influenzae PittAA]
 gi|145267194|gb|EDK07199.1| tyrosine recombinase [Haemophilus influenzae PittAA]
          Length = 295

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 96/304 (31%), Positives = 152/304 (50%), Gaps = 25/304 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L IER +S  T+ +Y+      +  LA     +  I    Q++ + +R  +++ + Q + 
Sbjct: 12  LRIERQMSPHTITNYQHQLDAIIKILA-----QQDIHAWTQVTPSVVRFILAESKKQGLK 66

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           ++SL   LS ++ FL +L ++     +    +   K+   LP+ ++ +Q    V  +L +
Sbjct: 67  EKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQ----VQQLLAN 122

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            S E   ID R+ AIL L+Y  GLR+SE   L   +I      +R+ GKG+K R+VP   
Sbjct: 123 DSKEP--IDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGR 180

Query: 205 SVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
               AI E+  +     P D        LF    G  ++    Q+ +       GL    
Sbjct: 181 YASHAIQEWLKVRALFNPKDE------ALFVSQLGNRISHRAIQKRLETWGIRQGLNSHL 234

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
             H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    + E+YDQTHP 
Sbjct: 235 NPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEMYDQTHPR 290

Query: 321 ITQK 324
             +K
Sbjct: 291 AKRK 294


>gi|262037917|ref|ZP_06011342.1| tyrosine recombinase XerC [Leptotrichia goodfellowii F0264]
 gi|261748060|gb|EEY35474.1| tyrosine recombinase XerC [Leptotrichia goodfellowii F0264]
          Length = 315

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 95/301 (31%), Positives = 152/301 (50%), Gaps = 18/301 (5%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTE--EKITIQTIRQLSYTEIRAFISKRRTQK- 82
           E+  G S  T++SY+ D  QF+ +L  Y E  E   ++TI   S+       SK    + 
Sbjct: 22  EVITGKSYNTIKSYKKDIMQFIDYLNEYEEIDEFENVETITFRSFIAYLNSTSKENNDER 81

Query: 83  --IGDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +  RS+ R +S +++F KYL+++KI  T + N + M   +K   LP  L  +    L 
Sbjct: 82  KVVSKRSINRKISALRTFFKYLQEKKIVKTNKVNYITMPKFEKE--LPNVLGREDINKLR 139

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D V     + +K    R+  I+ LLY  G+R SE + L    I  ++  LR+ GKG+K R
Sbjct: 140 DAV-----NTSKITGIRDRLIIELLYSSGIRASELIDLNEYMINIEERELRVIGKGNKER 194

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           I     + +K + +Y +      +   +  +F   +G+ L     +R I    +  GL  
Sbjct: 195 ITFFSENSKKWLEKYIEEKKEKYSNYTKDVVFANSKGEKLTTRSLRRLIADYAKKAGLQK 254

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             T H  RH+FAT LL+NG D+R +Q +LGH  +STTQ+YT+V+       + ++Y  TH
Sbjct: 255 EVTPHVFRHTFATELLNNGVDIRYLQELLGHSSISTTQVYTHVSKA----LLKDVYMNTH 310

Query: 319 P 319
           P
Sbjct: 311 P 311


>gi|152989006|ref|YP_001346765.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa
           PA7]
 gi|150964164|gb|ABR86189.1| tyrosine recombinase XerD [Pseudomonas aeruginosa PA7]
          Length = 298

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 149/307 (48%), Gaps = 30/307 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +E+GL+  T ++Y  D  QF  +L  +         +  +    I   ++ R  
Sbjct: 12  FLDALWLEKGLADNTREAYRNDLEQFNAWLDGHG------LRLEGVGRDAILDHLAWRLE 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q    RS  R LSG++ F +Y  +  +  E   L +   +    LP++L+E         
Sbjct: 66  QGYKARSTARFLSGLRGFYRYCLRDGLIAEDPTLQVDLPQLGKPLPKSLSEADV-----E 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL        +  R+  +L +LY CGLR+SE + LT + +   Q  +++ GKG K R+V
Sbjct: 121 ALLAAPEVDDPLGLRDRTMLEVLYACGLRVSELVGLTLEQVNLRQGVVKVFGKGSKERLV 180

Query: 201 PLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           PL           +R+A  +     P D+       LF  +RG+ +    F   I++  +
Sbjct: 181 PLGEEAIGWLERYLREARADLLGGRPSDV-------LFPSLRGEQMTRQTFWHRIKRHAQ 233

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +  S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT++        + +
Sbjct: 234 VAAIGKSISPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARAR----LQD 289

Query: 313 IYDQTHP 319
           ++ + HP
Sbjct: 290 LHARHHP 296


>gi|84625422|ref|YP_452794.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|84369362|dbj|BAE70520.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 305

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 150/310 (48%), Gaps = 19/310 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-----RQLSYTEIRAF 74
            +L  L++ER +S  TL +Y  D    + +      E    QT       QL    +R F
Sbjct: 6   EFLTYLQVERQVSAHTLDAYRRDLAALVAWTGERNAEDGAQQTATPVDSAQLDSAHLRQF 65

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++    + +  +SL+R LS  +S+  +L K      S    +R  K    LP+ L+  +A
Sbjct: 66  VAAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIAASPAAALRAPKAQRKLPQVLDADEA 125

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           + LV+            +  R+ A+L L Y  GLR+SE  +L  +++  D   + + GKG
Sbjct: 126 VRLVEVP------TDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVMVLGKG 179

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K R+VP+      A+ ++      D   +    +F G  G  ++    Q  I+QL    
Sbjct: 180 SKQRLVPVGSHAIAALRQWRR----DSGASADAHVFPGRAGGAISQRAVQIRIKQLAVRQ 235

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+      H LRHSFA+H+L + GDLR +Q +LGH  ++TTQIYT+++ ++    + ++Y
Sbjct: 236 GMFKDVHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQH----LAKVY 291

Query: 315 DQTHPSITQK 324
           D  HP   +K
Sbjct: 292 DAAHPRARRK 301


>gi|229845511|ref|ZP_04465639.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           6P18H1]
 gi|229811527|gb|EEP47228.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           6P18H1]
          Length = 295

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 96/304 (31%), Positives = 152/304 (50%), Gaps = 25/304 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L IER +S  T+ +Y+      +  LA     +  I    Q++ + +R  +++ + Q + 
Sbjct: 12  LRIERQMSPHTITNYQHQLDAIIKILA-----QQDIHAWTQVTPSVVRFILAESKKQGLK 66

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           ++SL   LS ++ FL +L ++     +    +   K+   LP+ ++ +Q    V  +L +
Sbjct: 67  EKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQ----VQQLLAN 122

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            S E   ID R+ AIL L+Y  GLR+SE   L   +I      +R+ GKG+K R+VP   
Sbjct: 123 DSKEP--IDIRDRAILELMYSSGLRLSELHGLDLNSINTRVREVRVIGKGNKERVVPFGR 180

Query: 205 SVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
               AI E+  +     P D        LF    G  ++    Q+ +       GL    
Sbjct: 181 YASHAIQEWLKVRALFNPKDE------ALFVSQLGNRISHRAIQKRLETWGIRQGLNSHL 234

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
             H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    + E+YDQTHP 
Sbjct: 235 NPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEMYDQTHPR 290

Query: 321 ITQK 324
             +K
Sbjct: 291 AKRK 294


>gi|296117640|ref|ZP_06836224.1| tyrosine recombinase XerC [Corynebacterium ammoniagenes DSM 20306]
 gi|295969371|gb|EFG82612.1| tyrosine recombinase XerC [Corynebacterium ammoniagenes DSM 20306]
          Length = 281

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 144/292 (49%), Gaps = 31/292 (10%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G S+ T++ Y  D    L+ LA  TE+          +   +R++++          +L 
Sbjct: 17  GRSEATIKGYTSD----LLDLAQTTED------FASFNLAHLRSWLASAVAAGKARSTLA 66

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R  +  K+F  +  K+          +   K    LP+ LNE++A T + N   H+  E 
Sbjct: 67  RRTAAAKAFSTWAVKQGYLRTDEAAKLSTPKVPKQLPKVLNEQEAATAMGNA--HSVDEL 124

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
             +  R++A+L LLY  G+R+SE   +   +I   + T+R+ GKG+K R+VP   + +KA
Sbjct: 125 HSL--RDAAMLELLYATGMRVSELTGIDLSDIDSSRQTIRVLGKGNKQRVVPYGQAAQKA 182

Query: 210 ILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +    DL         + P  LF G RG  ++        RQ+RR +      + H LRH
Sbjct: 183 L----DLWLARRAEMAKDPSALFVGTRGGRIDQ-------RQVRRVVEAAGQVSPHALRH 231

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           S ATH+L  G DLR +Q +LGH  L TTQ+YT+V S+     + ++++Q HP
Sbjct: 232 SAATHMLEGGADLRVVQELLGHSSLQTTQVYTHVTSER----LKKVFNQAHP 279


>gi|15601958|ref|NP_245030.1| site-specific tyrosine recombinase XerD [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|31563286|sp|Q9CPF0|XERD_PASMU RecName: Full=Tyrosine recombinase xerD
 gi|12720303|gb|AAK02177.1| XerD [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 297

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 93/301 (30%), Positives = 157/301 (52%), Gaps = 17/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  + IE+ LS+ T+ SY  D    + +L     EK  + T+  L   +++ F+ +R  
Sbjct: 10  FLNEIWIEKQLSQNTIASYRLDLTALIQWL-----EKQQL-TLINLDAIDLQTFLGERLN 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     S  R LS ++   +YL + K  T+     + + K  + LP+ L E+Q   L+++
Sbjct: 64  QGYKATSTARLLSAMRKLFQYLYREKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDLLNS 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             +        ++ R+ A++ LLY  GLR++E +SLT +NI  +Q  +R+ GKG+K RIV
Sbjct: 124 PDVDIP-----LELRDKAMMELLYATGLRVTELVSLTIENININQGIVRVVGKGNKERIV 178

Query: 201 PLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL- 258
           P+       I ++     PF L+      +F   R   +    F   I+       + + 
Sbjct: 179 PIGEEATYWIRQFMLYGRPFLLHGQSSDVVFPSKRALQMTRQTFWHRIKHYALLSDIDIN 238

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           S + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++++ H
Sbjct: 239 SLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER----LKHLHERYH 294

Query: 319 P 319
           P
Sbjct: 295 P 295


>gi|237785754|ref|YP_002906459.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758666|gb|ACR17916.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 327

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 154/312 (49%), Gaps = 33/312 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  L   +G S+ T+++Y  D    +  L   T +++T+  IR+     +RA  ++ 
Sbjct: 36  EDYLDFLTFTKGRSENTVKAYRNDLHSLVDGLT--TVDQLTLHHIRRWQADALRAGHARS 93

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   SL R  S +++F ++L+ R I        + + +   +LPR L   Q   ++
Sbjct: 94  --------SLSRRASAVRNFGRWLEHRGIVQSDPASRLSSPRPDKTLPRVLAADQTAEIL 145

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            N+ +    E   I  R+ A++  +YG G+R+SE   L   ++   + T+ I GKG+K R
Sbjct: 146 HNLEVGAEEEDP-IALRDLAMVEFMYGTGVRVSELCRLNIGDLDFARQTVTILGKGNKQR 204

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLN-----IQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +VP   S   A+  + D+    +  N         +F G RG  ++P       RQ+R  
Sbjct: 205 VVPFGESAAHALKRWIDIGRPAIAANGHHKDADEAVFLGKRGGRIDP-------RQVRTV 257

Query: 254 LGLPLSTTA------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +    ST +      H LRHS AT +L  G DLR +Q +LGH  L+TTQIYT+V+S+   
Sbjct: 258 VHQATSTVSGGDVSPHALRHSAATDVLEGGADLRVVQEMLGHASLATTQIYTHVDSER-- 315

Query: 308 DWMMEIYDQTHP 319
             +  +++Q HP
Sbjct: 316 --LKAVFNQAHP 325


>gi|315604538|ref|ZP_07879601.1| tyrosine recombinase XerC [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313550|gb|EFU61604.1| tyrosine recombinase XerC [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 303

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 146/304 (48%), Gaps = 16/304 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W + L   RG+S  T+++Y  D R  L F A    E    +    L+   IR++++    
Sbjct: 9   WGEYLRHGRGMSDHTIEAYLGDLRSLLSF-AGLAWEASAAELAEALTQRRIRSWLADTLA 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     ++ R  + ++ F  +  +  I        + + +    LP  L+E +A  L++ 
Sbjct: 68  RGGARSTIARHTASVRHFTAWATREGILAHDPAALLTSPRADQRLPAPLDESEARLLLN- 126

Query: 141 VLLHTSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
              H   E +       RN AIL L+Y CGLR+SEA  L   ++  +  T+R+ GKG+K 
Sbjct: 127 ---HARDEARGGGPSQLRNWAILELIYACGLRVSEACGLDISSLNREALTVRVTGKGNKE 183

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R+VP  P    A L+++ L    L         LF G RG  ++P + +  +       G
Sbjct: 184 RVVPYGPPAADA-LDHWLLRGRALLAREGSGDALFLGDRGGRIDPRIVRSMVHAAAARAG 242

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +      H LRHS ATHLL  G DLR++Q +LGH  L+TTQ YT+V++      +  IY 
Sbjct: 243 VH-DVAPHGLRHSTATHLLQGGADLRAVQEMLGHASLATTQRYTHVDTAR----LSAIYQ 297

Query: 316 QTHP 319
           + HP
Sbjct: 298 RAHP 301


>gi|145632561|ref|ZP_01788295.1| tyrosine recombinase [Haemophilus influenzae 3655]
 gi|148825411|ref|YP_001290164.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittEE]
 gi|229845011|ref|ZP_04465148.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           6P18H1]
 gi|260582592|ref|ZP_05850382.1| tyrosine recombinase XerD [Haemophilus influenzae NT127]
 gi|144986756|gb|EDJ93308.1| tyrosine recombinase [Haemophilus influenzae 3655]
 gi|148715571|gb|ABQ97781.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittEE]
 gi|229812145|gb|EEP47837.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           6P18H1]
 gi|260094403|gb|EEW78301.1| tyrosine recombinase XerD [Haemophilus influenzae NT127]
 gi|301169019|emb|CBW28616.1| site-specific tyrosine recombinase [Haemophilus influenzae 10810]
          Length = 297

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 152/295 (51%), Gaps = 17/295 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           IE+GLS+ T+QSY  D      +L    +  ++++T   L   +++ F+ +R  +     
Sbjct: 16  IEKGLSENTVQSYRLDLTALCDWL---DKNDLSLET---LDAVDLQGFLGERLEKGYKAT 69

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R LS ++   +YL + K   +     + + K  + LP+ L E+Q      + LL+T 
Sbjct: 70  STARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQV-----SDLLNTP 124

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG+K RIVP+    
Sbjct: 125 DVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184

Query: 207 RKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHT 264
              + ++     P  LN      +F   R + +    F   ++       +     + H 
Sbjct: 185 AYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADALSPHV 244

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++++ HP
Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER----LKRLHERFHP 295


>gi|134096115|ref|YP_001101190.1| tyrosine recombinase xerC [Herminiimonas arsenicoxydans]
          Length = 296

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 138/278 (49%), Gaps = 25/278 (8%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            +  +S+ +IR F ++   + +  RS+ R LS  + F  +L ++     + +  ++  K+
Sbjct: 28  ALSAISHFQIRKFAAQLHAKGLNARSIARKLSAWRGFFTWLSEQNAVASNPVDGIKAPKR 87

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR----NSAILYLLYGCGLRISEALSL- 176
           +  LP+AL    A+ LV      ++   K  DA     N A+  LLY  GLR SE + L 
Sbjct: 88  NKPLPKALAADDAVRLVS-----SNSPGKNADATMQLCNRAMFELLYSSGLRASELVGLD 142

Query: 177 ---------TPQNIMD-DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
                    T    +D D     + GKG K+R  P+      A+  +  +    L L+  
Sbjct: 143 LKYAQENRYTSAGWIDFDAHEAMVTGKGSKMRSAPIGQPAIDALKAWLAVRDTLLKLDPH 202

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
            PLF   RG  ++  V Q  ++   + +GLP+    H LRHSFA+H+L + GDLR++Q +
Sbjct: 203 -PLFLSERGTRISARVLQLRLKAHAQAVGLPMDVHPHVLRHSFASHVLQSSGDLRAVQEM 261

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LGH  +S TQIYT+++ +     + ++YD  HP   +K
Sbjct: 262 LGHASISATQIYTSLDFQR----LAQVYDAAHPRAKKK 295


>gi|89902211|ref|YP_524682.1| phage integrase [Rhodoferax ferrireducens T118]
 gi|89346948|gb|ABD71151.1| phage integrase [Rhodoferax ferrireducens T118]
          Length = 337

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 152/318 (47%), Gaps = 30/318 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+++ +E+ L++ T++ Y  D ++     A    E + +Q       + IR ++++ 
Sbjct: 23  ERYLEHVRVEKRLAQRTVELYALDLQKLSQQAAQAGVELLQVQN------SHIRRWVAQM 76

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  R +   LSG + F  +L +  + + + + ++R  K    LP+AL+  QA+ L 
Sbjct: 77  NAGGRSGRGIALILSGWRGFYVWLGREGLISSNPVQDVRAPKAGKPLPKALSVDQAVQLA 136

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL------TPQNIMDDQST-LRIQ 191
                 +     W++AR++A++ LLYG GLR+ E   L      + +  +D Q     + 
Sbjct: 137 S---FASGSNDPWLEARDAAMVELLYGAGLRVGELTGLDTVASSSARGWIDLQGGEAHVL 193

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDL----------NLNIQLPLFRGIRGKPLNPG 241
           GKG K R VP+      AI  +  L    L            N Q  LF G  G  L+  
Sbjct: 194 GKGGKRRSVPVGAKAVLAITHWLALRDQALAQAKPGLQGPGGNAQAALFMGRNGTRLSAQ 253

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              + +RQ     GL      H LRHSFA+HLL +  DLR++Q +LGH  ++TTQ YT +
Sbjct: 254 SIWQRLRQRSLQAGLTTPVHPHMLRHSFASHLLQSSSDLRAVQELLGHASITTTQAYTRL 313

Query: 302 NSKNGGDWMMEIYDQTHP 319
           + ++    + + YD  HP
Sbjct: 314 DFQH----LAKAYDAAHP 327


>gi|240948880|ref|ZP_04753236.1| site-specific tyrosine recombinase XerC [Actinobacillus minor
           NM305]
 gi|240296695|gb|EER47306.1| site-specific tyrosine recombinase XerC [Actinobacillus minor
           NM305]
          Length = 300

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 156/301 (51%), Gaps = 19/301 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  E+ +S  TL +Y+   RQ     A   +++I+  + +++  + IR  +S+   Q +G
Sbjct: 16  LRAEKQVSPHTLSNYQ---RQLQAVCAMLKQQQIS--SWQEVDASVIRWILSQSHKQGLG 70

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            +S+   L  ++ +  YL K +    +  L ++  K    LP+ ++ +Q   L++     
Sbjct: 71  AKSIGVRLVALRQWFAYLVKNEQLQANPALGIKAPKVGRHLPKNVDAEQVAQLLN----- 125

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            +  TK ++ R+ A++ L+Y  GLR+SE   L    +      +R+ GKG+K RIVP+  
Sbjct: 126 -TEATKPLEIRDLAMMELMYSSGLRLSELQGLDLDRMDLSTREVRLLGKGNKERIVPIGS 184

Query: 205 SVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              +AI  + ++   F+   N    +F   RG  L+    Q  + +  R  GL      H
Sbjct: 185 KALEAIHRWLEVRMRFNPQDN---AVFLNNRGGRLSHRSIQLIMEKWGRKQGLETHLHPH 241

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            LRHSFATH+L   GDLR++Q +LGH  L+TTQIYT+++ ++    + ++YD  HP   +
Sbjct: 242 KLRHSFATHMLEGSGDLRAVQELLGHSSLATTQIYTHLDFQH----LAKVYDAAHPRARK 297

Query: 324 K 324
           K
Sbjct: 298 K 298


>gi|329733650|gb|EGG69978.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           21193]
          Length = 298

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 164/319 (51%), Gaps = 42/319 (13%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L++ER  S+ TL+SY+ D  QF  FL    +E + + T     Y + R ++S   +
Sbjct: 8   FLNTLKVERNFSEHTLKSYQDDLIQFNQFLE---QEHLELNT---FEYRDARNYLSYLYS 61

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNEKQALT 136
             +   S+ R +S +++F +Y     +T + NI+N    + + KK   LP+   E++   
Sbjct: 62  NHLKRTSVSRKISTLRTFYEYW----MTLDENIINPFVQLVHPKKEKYLPQFFYEEEM-- 115

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
               VL  T  E    + R+  IL LLY  G+R+SE +++  Q+I    + + + GKG K
Sbjct: 116 ---EVLFKTVEEDTSKNLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSK 172

Query: 197 IRIVPLLPSVRKAILEYYDL------CPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQ 249
            R VP     R++I  Y +       C  D        L   ++G+ +   GV  RY+  
Sbjct: 173 ERFVPFGAYCRQSIENYLEHFKPIQSCNHDF-------LIVNMKGEAITERGV--RYVLN 223

Query: 250 --LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
             ++R  G+      H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++   
Sbjct: 224 DIVKRTAGVS-EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ-- 280

Query: 308 DWMMEIYDQTHPSITQKDK 326
             + ++Y   HP   ++++
Sbjct: 281 --LRKVYLNAHPRAKKENE 297


>gi|323464636|gb|ADX76789.1| tyrosine recombinase XerC [Staphylococcus pseudintermedius ED99]
          Length = 296

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/306 (31%), Positives = 160/306 (52%), Gaps = 24/306 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +L  L+ ER  S  TL++Y  D  QF  FLA   +E++++   +   Y + R ++  
Sbjct: 5   QEQFLDMLKRERFFSDHTLKAYHDDLVQFNRFLA---QEQLSLTAFK---YIDARNYLQT 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +   ++ R +S ++SF  +   +     +  + + + KK   LP     ++   L
Sbjct: 59  LYDLGLQRTTVSRKISTLRSFYAFWMTQDDEIVNPFVQLVHPKKERYLPTFFYTEEMEAL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
              V+   +H+      R+  IL L Y  G+R+SE +SL  +++  +   +++ GKG K 
Sbjct: 119 FQTVM-QDAHK----GLRDRVILELFYATGIRVSELVSLKTEDVDLEMCWIKVLGKGGKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNP-GVFQRYIRQ--LRRY 253
           RIVP     R++I +Y  L  F    N+Q P L   ++G+P+   GV  RY+    ++R 
Sbjct: 174 RIVPFGEFCRQSIEQY--LAEFAPIQNVQHPYLITNLKGQPITERGV--RYVLNDIVKRT 229

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+  S   H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V ++     +  +
Sbjct: 230 AGVT-SIHPHKLRHTFATHLLNEGADLRTVQSLLGHVNLSTTGRYTHVTNQQ----LRNV 284

Query: 314 YDQTHP 319
           Y Q HP
Sbjct: 285 YLQAHP 290


>gi|269215605|ref|ZP_06159459.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122]
 gi|269131092|gb|EEZ62167.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122]
          Length = 307

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 143/292 (48%), Gaps = 15/292 (5%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RG S  T++ Y  D   F  + A +    + +      +Y +IR+++ ++       R++
Sbjct: 28  RGDSVHTVRGYRNDLLDFGRWAARHGIVPLDV------TYRQIRSYLGEQNQAGYARRTI 81

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R LS ++ F ++L      +   +  +   K S  LPR +       +++  + H+S E
Sbjct: 82  NRRLSSLRGFFRWLNVTGRVSGDPVGVVSGPKLSKGLPRFIPASDMARILN--VHHSSSE 139

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
            +  D RN AIL  LY  G RISEA  L   ++      +R+ GKG K RIVPL      
Sbjct: 140 PE--DMRNQAILEFLYASGARISEASGLLASDVDFSSRQVRVMGKGSKERIVPLHDLAVS 197

Query: 209 AILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           ++  Y +     L  +   P  F   RG+ ++    ++  ++     G+  + T H +RH
Sbjct: 198 SMRAYAEHARPQLQGSGSCPRFFVSSRGRAMSTDALRKMFKRTLASAGVDGTYTPHDMRH 257

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           +FAT LL  G DLRS+Q +LGH  LSTTQIYT+V+S+     +  ++   HP
Sbjct: 258 TFATDLLDGGADLRSVQEMLGHASLSTTQIYTHVSSER----LRSVHHAAHP 305


>gi|145631442|ref|ZP_01787212.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           R3021]
 gi|144982979|gb|EDJ90488.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           R3021]
          Length = 297

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 152/295 (51%), Gaps = 17/295 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           IE+GLS+ T+QSY  D      +L    +  ++++T   L   +++ F+ +R  +     
Sbjct: 16  IEKGLSENTVQSYRLDLTALCDWL---DKNDLSLET---LDAVDLQGFLGERLEKGYKAT 69

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R LS ++   +YL + K   +     + + K  + LP+ L E+Q      + LL+T 
Sbjct: 70  STARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQV-----SDLLNTP 124

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG+K RIVP+    
Sbjct: 125 DVDVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184

Query: 207 RKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHT 264
              + ++     P  LN      +F   R + +    F   ++       +     + H 
Sbjct: 185 AYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADALSPHV 244

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++++ HP
Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER----LKRLHERFHP 295


>gi|238783654|ref|ZP_04627674.1| Tyrosine recombinase xerD [Yersinia bercovieri ATCC 43970]
 gi|238715367|gb|EEQ07359.1| Tyrosine recombinase xerD [Yersinia bercovieri ATCC 43970]
          Length = 299

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 154/303 (50%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER L++ TL SY  D      +L  +  + +   +       E+++F+++R
Sbjct: 10  EQFLDALWLERNLAENTLASYRLDLHALTGWLDHHGSDLLRAGS------QELQSFLAER 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q  TL+
Sbjct: 64  IEGGYKATSSARLLSAMRRLFQYLYREKLRDDDPTAILSSPKLPQRLPKDLSEAQVDTLL 123

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           ++  +        ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K R
Sbjct: 124 NSPNVDIP-----LELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKER 178

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       I  Y D   P+ +N      LF   R + +    F   I+      G+ 
Sbjct: 179 LVPLGEEAVYWIENYMDHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGID 238

Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q
Sbjct: 239 SERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQQ 294

Query: 317 THP 319
            HP
Sbjct: 295 HHP 297


>gi|319944411|ref|ZP_08018685.1| tyrosine recombinase XerD [Lautropia mirabilis ATCC 51599]
 gi|319742372|gb|EFV94785.1| tyrosine recombinase XerD [Lautropia mirabilis ATCC 51599]
          Length = 342

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 149/302 (49%), Gaps = 15/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q++   L +E GLSK TLQ+Y  D  Q   +LA  T        + + S  ++ A+++  
Sbjct: 53  QSFSDALWLEDGLSKNTLQAYRRDLVQLARWLAPSTRGV----ALAEASEADLLAYLADA 108

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R L+ IK F ++L +     +   L +R +++    P  L+E Q    V
Sbjct: 109 HGHG-KPSSANRRLTVIKRFYRHLLREGRRQDDPTLRIRAMRQPARFPATLSEAQ----V 163

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           + +L     ET  +  R+ A+L +LY  GLR+SE + L    +    S +RI GKG K R
Sbjct: 164 EALLAAPDVETA-LGLRDRAMLEVLYATGLRVSELVGLKLSEVSMVDSLVRIVGKGSKER 222

Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL    R  ++ Y  +  P  L       +F   R   +   +F   IR+     G+ 
Sbjct: 223 LVPLGEEARAWLVRYLQEARPRLLGARQAEAVFVTQRATGMTRQMFWVLIRRHALRAGIE 282

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V        +  ++ Q 
Sbjct: 283 AQLSPHTLRHAFATHLLNHGADLRVVQVLLGHADISTTQIYTHVARAR----LKALHAQH 338

Query: 318 HP 319
           HP
Sbjct: 339 HP 340


>gi|283769465|ref|ZP_06342361.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa
           W1219]
 gi|283103733|gb|EFC05119.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa
           W1219]
          Length = 297

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/305 (32%), Positives = 157/305 (51%), Gaps = 24/305 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA---FYTEEKITIQTIRQLSYTEIRAFI 75
           Q +  +LEI +G S  T++SYE D +Q+L +L        +K+T+Q ++         F+
Sbjct: 8   QQFHLHLEINQGKSPRTVRSYENDLKQYLAYLKEKHILDSQKVTLQVVQD--------FL 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQA 134
           S++ T K    S+    + I++F + ++    T E N +++  ++K+ + LP  L+ ++ 
Sbjct: 60  SQQSTIK-SSNSVVHMATSIRNFHEDIEFS--TGEENPVSLIQVRKNETYLPSFLSVEEV 116

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+++    T  + K     N  IL L+Y CGLRISE  SLT   +  +   LRI GKG
Sbjct: 117 KQLLNSF---TRDDPK--QELNRTILELIYACGLRISELCSLTVAQVQLETGILRILGKG 171

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +K RIVP+   V K +  Y +L     N +     F    G  +     Q  ++Q     
Sbjct: 172 NKERIVPIPNQVVKDLDYYLNLIRPIWNQHKTNTFFINHLGNRITARSIQLLLKQKAMEC 231

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G     T H+LRH++ATHLL  G DLR IQ +LGH  + TT+IYT+V ++     + E Y
Sbjct: 232 GFQKDITPHSLRHTYATHLLQAGADLRIIQELLGHSNIKTTEIYTHVQNRQ----LFEAY 287

Query: 315 DQTHP 319
              HP
Sbjct: 288 QNFHP 292


>gi|188575133|ref|YP_001912062.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188519585|gb|ACD57530.1| tyrosine recombinase XerC [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 305

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 150/310 (48%), Gaps = 19/310 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-----RQLSYTEIRAF 74
            +L  L++ER +S  TL +Y  D    + +      E    QT       QL    +R F
Sbjct: 6   EFLTYLQVERQVSAHTLDAYRRDLAALVAWTGERNAEDGAQQTATPVDSAQLDSAHLRQF 65

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++    + +  +SL+R LS  +S+  +L K      S    +R  K    LP+ L+  +A
Sbjct: 66  VAAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIAASPAAALRAPKAQRKLPQVLDADEA 125

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           + LV+            +  R+ A+L L Y  GLR+SE  +L  +++  D   + + GKG
Sbjct: 126 VRLVEVP------TDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVMVLGKG 179

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K R+VP+      A+ ++      D   +    +F G  G  ++    Q  I+QL    
Sbjct: 180 SKQRLVPVGSHAIAALRQWRR----DSGASADAHVFPGRTGGAISQRAVQIRIKQLAVRQ 235

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+      H LRHSFA+H+L + GDLR +Q +LGH  ++TTQIYT+++ ++    + ++Y
Sbjct: 236 GMFKDVHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQH----LAKVY 291

Query: 315 DQTHPSITQK 324
           D  HP   +K
Sbjct: 292 DAAHPRARRK 301


>gi|308187997|ref|YP_003932128.1| Tyrosine recombinase xerD [Pantoea vagans C9-1]
 gi|308058507|gb|ADO10679.1| Tyrosine recombinase xerD [Pantoea vagans C9-1]
          Length = 297

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 153/303 (50%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L IER L++ TL SY  D +    +L   T  ++T+ ++  L   +++ F+++R
Sbjct: 8   EQFLDALWIERNLAQNTLSSYRQDLQTLTGWL---THHQLTLLSVTPL---DLQQFLAER 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K+  +     +   K    LP+ L+E Q     
Sbjct: 62  LEGGYKATSSARLLSAMRRLFQYLYREKLRPDDPSALLSAPKLPQRLPKDLSEAQV---- 117

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL        ++ R+ A+L +LY  GLR+SE   LT  +I   Q  +R+ GKGDK R
Sbjct: 118 -ERLLQAPDTNIPLELRDKAMLEVLYATGLRVSELTGLTLSDISLRQGVVRVIGKGDKER 176

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       + +Y +   P+ LN      +F   R + +    F   I+      G+ 
Sbjct: 177 LVPLGEEAVYWLEQYMEHGRPWLLNGQTLDVMFPSNRAQQMTRQTFWHRIKHYATLAGID 236

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H +RH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q
Sbjct: 237 SEKLSPHVMRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQ 292

Query: 317 THP 319
            HP
Sbjct: 293 HHP 295


>gi|15642416|ref|NP_232049.1| site-specific tyrosine recombinase XerD [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121587637|ref|ZP_01677401.1| tyrosine recombinase XerD [Vibrio cholerae 2740-80]
 gi|121728363|ref|ZP_01681392.1| tyrosine recombinase XerD [Vibrio cholerae V52]
 gi|147673043|ref|YP_001217919.1| site-specific tyrosine recombinase XerD [Vibrio cholerae O395]
 gi|153802800|ref|ZP_01957386.1| tyrosine recombinase XerD [Vibrio cholerae MZO-3]
 gi|153818418|ref|ZP_01971085.1| tyrosine recombinase XerD [Vibrio cholerae NCTC 8457]
 gi|153822226|ref|ZP_01974893.1| tyrosine recombinase XerD [Vibrio cholerae B33]
 gi|153826869|ref|ZP_01979536.1| tyrosine recombinase XerD [Vibrio cholerae MZO-2]
 gi|227082540|ref|YP_002811091.1| integrase/recombinase XerD [Vibrio cholerae M66-2]
 gi|229507521|ref|ZP_04397026.1| tyrosine recombinase XerD [Vibrio cholerae BX 330286]
 gi|229512283|ref|ZP_04401762.1| tyrosine recombinase XerD [Vibrio cholerae B33]
 gi|229514045|ref|ZP_04403507.1| tyrosine recombinase XerD [Vibrio cholerae TMA 21]
 gi|229519419|ref|ZP_04408862.1| tyrosine recombinase XerD [Vibrio cholerae RC9]
 gi|229521248|ref|ZP_04410668.1| tyrosine recombinase XerD [Vibrio cholerae TM 11079-80]
 gi|229528596|ref|ZP_04417986.1| tyrosine recombinase XerD [Vibrio cholerae 12129(1)]
 gi|229607027|ref|YP_002877675.1| site-specific tyrosine recombinase XerD [Vibrio cholerae MJ-1236]
 gi|254226633|ref|ZP_04920213.1| tyrosine recombinase XerD [Vibrio cholerae V51]
 gi|254291785|ref|ZP_04962570.1| tyrosine recombinase XerD [Vibrio cholerae AM-19226]
 gi|254849542|ref|ZP_05238892.1| tyrosine recombinase XerD [Vibrio cholerae MO10]
 gi|255746910|ref|ZP_05420855.1| site-specific recombinase XerD [Vibrio cholera CIRS 101]
 gi|262161547|ref|ZP_06030657.1| site-specific recombinase XerD [Vibrio cholerae INDRE 91/1]
 gi|262168398|ref|ZP_06036095.1| site-specific recombinase XerD [Vibrio cholerae RC27]
 gi|262190652|ref|ZP_06048886.1| site-specific recombinase XerD [Vibrio cholerae CT 5369-93]
 gi|297581043|ref|ZP_06942968.1| tyrosine recombinase xerD [Vibrio cholerae RC385]
 gi|298500223|ref|ZP_07010028.1| tyrosine recombinase XerD [Vibrio cholerae MAK 757]
 gi|34223076|sp|Q9KPE9|XERD_VIBCH RecName: Full=Tyrosine recombinase xerD
 gi|9656993|gb|AAF95562.1| integrase/recombinase XerD [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121548147|gb|EAX58220.1| tyrosine recombinase XerD [Vibrio cholerae 2740-80]
 gi|121629354|gb|EAX61785.1| tyrosine recombinase XerD [Vibrio cholerae V52]
 gi|124121665|gb|EAY40408.1| tyrosine recombinase XerD [Vibrio cholerae MZO-3]
 gi|125620852|gb|EAZ49206.1| tyrosine recombinase XerD [Vibrio cholerae V51]
 gi|126511051|gb|EAZ73645.1| tyrosine recombinase XerD [Vibrio cholerae NCTC 8457]
 gi|126520236|gb|EAZ77459.1| tyrosine recombinase XerD [Vibrio cholerae B33]
 gi|146314926|gb|ABQ19465.1| tyrosine recombinase XerD [Vibrio cholerae O395]
 gi|149739285|gb|EDM53541.1| tyrosine recombinase XerD [Vibrio cholerae MZO-2]
 gi|150422297|gb|EDN14259.1| tyrosine recombinase XerD [Vibrio cholerae AM-19226]
 gi|227010428|gb|ACP06640.1| integrase/recombinase XerD [Vibrio cholerae M66-2]
 gi|227014311|gb|ACP10521.1| integrase/recombinase XerD [Vibrio cholerae O395]
 gi|229332370|gb|EEN97856.1| tyrosine recombinase XerD [Vibrio cholerae 12129(1)]
 gi|229341780|gb|EEO06782.1| tyrosine recombinase XerD [Vibrio cholerae TM 11079-80]
 gi|229344108|gb|EEO09083.1| tyrosine recombinase XerD [Vibrio cholerae RC9]
 gi|229349226|gb|EEO14183.1| tyrosine recombinase XerD [Vibrio cholerae TMA 21]
 gi|229352248|gb|EEO17189.1| tyrosine recombinase XerD [Vibrio cholerae B33]
 gi|229355026|gb|EEO19947.1| tyrosine recombinase XerD [Vibrio cholerae BX 330286]
 gi|229369682|gb|ACQ60105.1| tyrosine recombinase XerD [Vibrio cholerae MJ-1236]
 gi|254845247|gb|EET23661.1| tyrosine recombinase XerD [Vibrio cholerae MO10]
 gi|255735312|gb|EET90712.1| site-specific recombinase XerD [Vibrio cholera CIRS 101]
 gi|262023290|gb|EEY41994.1| site-specific recombinase XerD [Vibrio cholerae RC27]
 gi|262028858|gb|EEY47512.1| site-specific recombinase XerD [Vibrio cholerae INDRE 91/1]
 gi|262033466|gb|EEY51970.1| site-specific recombinase XerD [Vibrio cholerae CT 5369-93]
 gi|297534869|gb|EFH73705.1| tyrosine recombinase xerD [Vibrio cholerae RC385]
 gi|297540916|gb|EFH76970.1| tyrosine recombinase XerD [Vibrio cholerae MAK 757]
 gi|327484912|gb|AEA79319.1| Tyrosine recombinase XerD [Vibrio cholerae LMA3894-4]
          Length = 302

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 156/304 (51%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  +  ERGL++ T+ SY  D  + L ++A   + +  +  I      E ++++S+ 
Sbjct: 13  EQFLDTMWFERGLAENTVASYRNDLSKLLEWMA---QNQYRLDFISFAGLQEYQSWLSE- 68

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R LS I+   +YL + K+  +     + + K    LP+ L+E Q     
Sbjct: 69  --QNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQV---- 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL        ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG K R
Sbjct: 123 -EALLSAPDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKER 181

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VP+  +  + I E +      L L  Q    +F   RG+ +    F   I+      G+
Sbjct: 182 LVPMGENAIEWI-ETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGI 240

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            +   + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + ++++
Sbjct: 241 DVEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHN 296

Query: 316 QTHP 319
           + HP
Sbjct: 297 EHHP 300


>gi|68248917|ref|YP_248029.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           86-028NP]
 gi|68057116|gb|AAX87369.1| Site-specific recombinase XerD [Haemophilus influenzae 86-028NP]
          Length = 297

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 152/295 (51%), Gaps = 17/295 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           IE+GLS+ T+QSY  D      +L    +  ++++T   L   +++ F+ +R  +     
Sbjct: 16  IEKGLSENTVQSYRLDLTALCDWL---DKNDLSLET---LDAVDLQGFLGERLEKGYKAT 69

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R LS ++   +YL + K   +     + + K  + LP+ L E+Q      + LL+T 
Sbjct: 70  STARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQV-----SDLLNTP 124

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG+K RIVP+    
Sbjct: 125 DVKVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184

Query: 207 RKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHT 264
              + ++     P  LN      +F   R + +    F   ++       +     + H 
Sbjct: 185 AYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADALSPHV 244

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++++ HP
Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER----LKRLHERFHP 295


>gi|126642664|ref|YP_001085648.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC
           17978]
          Length = 233

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/246 (34%), Positives = 137/246 (55%), Gaps = 24/246 (9%)

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           ++R L+ I+ F+K+ ++ K   E N  +   LK+    PR L     + +V+ +L     
Sbjct: 1   MQRHLTSIRQFMKWAEQGKYL-EINPTDDFKLKRQ---PRPLPGMIDIEMVNQILDQPMP 56

Query: 148 ETK-----WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
           E       W+  R+ A+L LLY  GLR++E   LT ++I  ++  +RI GKG+K RIVP 
Sbjct: 57  EKPVDQQLWL--RDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 114

Query: 203 LPSVRKAILEY---YDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
               ++++L +   Y++    FD N ++    F   RG  L P   ++ ++   +  G+ 
Sbjct: 115 GKKAKESLLNWLKIYNIWKGHFDQNASV----FISQRGGALTPRQIEKRVKLQAQRAGVN 170

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           +    H LRH FA+H+LS+ GDLRS+Q +LGH  LSTTQIYT+++     D + ++YDQ 
Sbjct: 171 VDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHLAQVYDQA 226

Query: 318 HPSITQ 323
           HP  T+
Sbjct: 227 HPRATK 232


>gi|88802458|ref|ZP_01117985.1| putative site-specific recombinase [Polaribacter irgensii 23-P]
 gi|88781316|gb|EAR12494.1| putative site-specific recombinase [Polaribacter irgensii 23-P]
          Length = 301

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 155/307 (50%), Gaps = 18/307 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKR 78
           ++L+ L +E+G SK T+ +Y  D   F  F A  + +E IT+     ++Y ++R +I   
Sbjct: 10  SFLEYLLLEKGYSKHTIIAYRKDLIDFSSFCALHFDQESITV-----VAYAQVRRWIVSL 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               I + ++ R +S +KSF K+L+K      + +   ++LK +  +      K+   ++
Sbjct: 65  VAADISNSTINRKVSSLKSFYKFLQKSSQIENNPLSKHKSLKVAKRVQVPFTAKEINAVL 124

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +N+    + E      RN  ++ LLY  G+R +E +S+   ++     T+++ GK +K R
Sbjct: 125 ENMAGGQNFEA----CRNRLLVELLYSTGMRRAELISIQEVDVNCADQTIKVVGKRNKER 180

Query: 199 IVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
            VP+L SV + I EY  L    D      L   +G     L   +  R I      +   
Sbjct: 181 YVPILSSVLQTIKEYQGLKATIDGGSGFFLITSKG---NKLYETLVYRIINSYFSKISSK 237

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           +  + H LRHSFATHLL+ G DL S++ +LGH  L++TQ+YT+    N  D +  IY Q 
Sbjct: 238 VKKSPHILRHSFATHLLNEGADLNSVKELLGHSSLASTQVYTH----NSLDAIKNIYKQA 293

Query: 318 HPSITQK 324
           HP   +K
Sbjct: 294 HPRSNKK 300


>gi|89895059|ref|YP_518546.1| hypothetical protein DSY2313 [Desulfitobacterium hafniense Y51]
 gi|89334507|dbj|BAE84102.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 322

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/320 (29%), Positives = 152/320 (47%), Gaps = 29/320 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ERGLS  T  SYE D R+F  FL    +  I  +        ++  F+ + 
Sbjct: 10  KKYLSYLNVERGLSPNTRNSYERDLRKFTAFLQQRGKNIIACEG------NDLFLFLLQE 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + Q    R+L R L+ ++ F  +L   ++  +     +   K    LP  L+E     L+
Sbjct: 64  KNQGRSARTLARYLATLRGFFAFLLGEEMREDDPTEYLSTPKLEQHLPHVLSEGSISKLM 123

Query: 139 DNVL------------------LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                                   +  + K +  RN A++ +LYGCGLR+SE + L   +
Sbjct: 124 GEGGDRDKEGPKPGKSSKKAGDSDSEGKDKGLLMRNMAMIEVLYGCGLRVSELVGLKVSD 183

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLN 239
           I+ +  TLR +GKG K RIVP+     + +  Y +     L    +   LF   RG  L 
Sbjct: 184 IIFETRTLRCRGKGSKERIVPIGEYALEVLQNYLEHDRERLRGKHKTEVLFLNSRGTALT 243

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                  +++  +  G+  +   H  RHSFATHLL +G DLRS+Q +LGH  ++TTQIYT
Sbjct: 244 RQGIWDILKKWAQTHGVQENIYPHKFRHSFATHLLDHGADLRSVQEMLGHADIATTQIYT 303

Query: 300 NVNSKNGGDWMMEIYDQTHP 319
           +++ +     ++E++ + HP
Sbjct: 304 HLSRQR----LLEVFRKAHP 319


>gi|289550957|ref|YP_003471861.1| Site-specific tyrosine recombinase [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658459|ref|ZP_07911331.1| tyrosine recombinase XerC [Staphylococcus lugdunensis M23590]
 gi|289180489|gb|ADC87734.1| Site-specific tyrosine recombinase [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496788|gb|EFU85111.1| tyrosine recombinase XerC [Staphylococcus lugdunensis M23590]
          Length = 297

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 159/306 (51%), Gaps = 24/306 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +L  L++ER  S  T++SY  D  QF  FLA   +E +T+ T     Y + R ++S 
Sbjct: 5   QKAFLYMLKVERNFSDHTIKSYHDDLMQFNEFLA---QEMLTLST---FEYKDARNYLSY 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + +   ++ R +S ++SF +Y   +  T  +  + + + KK   LP+   E +   L
Sbjct: 59  LYNKNLKRTTVSRKISTLRSFYEYWMTQDETVINPFVQLVHPKKEQYLPQFFYEAEMDAL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            + VL    H+ K    R+  IL LLY  G+R+SE + +   +I      +++ GKG K 
Sbjct: 119 FETVL----HDAKK-GLRDRVILELLYSTGMRVSELVHIKKMDIDLTLPGVKVLGKGSKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNP-GVFQRYIRQ--LRRY 253
           R +P     +++I +Y  L  F  +  N    L   + G+P+   GV  RY+    ++R 
Sbjct: 174 RFLPFGEFCKQSIEQY--LLEFGPVKQNDHPFLLVNMNGQPITERGV--RYVLNDIVKRT 229

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+      H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+     D + ++
Sbjct: 230 AGVT-DIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSK----DQLRKV 284

Query: 314 YDQTHP 319
           Y   HP
Sbjct: 285 YLNAHP 290


>gi|23099003|ref|NP_692469.1| site-specific tyrosine recombinase XerC [Oceanobacillus iheyensis
           HTE831]
 gi|34222801|sp|Q7ZAM5|XERC_OCEIH RecName: Full=Tyrosine recombinase xerC
 gi|22777231|dbj|BAC13504.1| integrase:recombinase [Oceanobacillus iheyensis HTE831]
          Length = 305

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 154/303 (50%), Gaps = 19/303 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +++ L+IE+  S  T++ Y  D     IF  F   E ++   I  ++Y ++R F++    
Sbjct: 11  FVEYLQIEKNASPYTVKYYRNDLE---IFADFLRSEGLS--HIANVTYKDVRIFLTSLYE 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q++  RS+ R +S ++SF ++L++      +  + +   K S  +P  L +++      +
Sbjct: 66  QELSRRSVSRKISTLRSFYRFLEREGYVEGNPFVQLHLPKTSKPVPGFLYQEEL-----D 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            L   +  T  +  R+ A+L +LYG G+R+SE  +L  Q+I     T+ ++GKG K R V
Sbjct: 121 KLFEVNDITTPLGQRDQALLEMLYGTGIRVSECQNLRLQDIDFAIGTIFVRGKGRKERYV 180

Query: 201 PLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           P       A+  Y       L    N + +  +F   RG  L     +  + ++     L
Sbjct: 181 PFGSFAEIALETYLQEGRTKLLEKSNSDTEF-IFLNSRGGHLTNRGIRTILNKIVERASL 239

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            +    H LRH+FATHLL+ G DLRS+Q +LGH  LS+TQIYT+V      D + E Y +
Sbjct: 240 TVHVHPHKLRHTFATHLLNEGADLRSVQELLGHESLSSTQIYTHVTK----DHLREAYMK 295

Query: 317 THP 319
           +HP
Sbjct: 296 SHP 298


>gi|17544771|ref|NP_518173.1| site-specific tyrosine recombinase XerC [Ralstonia solanacearum
           GMI1000]
 gi|34222938|sp|Q8Y3C8|XERC1_RALSO RecName: Full=Tyrosine recombinase xerC 1
 gi|17427060|emb|CAD13580.1| probable tyrosine recombinase xerc 1 protein [Ralstonia
           solanacearum GMI1000]
          Length = 329

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/326 (29%), Positives = 159/326 (48%), Gaps = 41/326 (12%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L+ ER LS+ TL SY    R+  +           I  +R L    IR  +++   
Sbjct: 23  YLDALKFERKLSQHTLASY---ARELAVLQQLGARFAAGIDLMR-LQPHHIRRMMAQLHG 78

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVD 139
             +  RS+ R+LS  + + ++L  R     +N ++ +R  K    LP+AL+ +QA+ L++
Sbjct: 79  GGLSGRSIARALSAWRGWYQWLALRDAAVTANPVDGIRAPKSPKRLPKALSVEQAVALME 138

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQST---------L 188
            +      + + +  R+ A+  L Y CGLR+SE   L L      D  S          +
Sbjct: 139 QL---PGDDPEAV--RDRAVNELFYSCGLRLSELVGLDLRHAQAGDYASASWLDLEAREV 193

Query: 189 RIQGKGDKIRIVPL----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
            + GKG+K R VP+            +VR  + +  D  P D +      LF   RGK L
Sbjct: 194 TVLGKGNKRRTVPVGSKAAEALAAWLAVRPQLAQP-DAAPEDAHA-----LFLSARGKRL 247

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                Q  +++     G+P     H LRHSFATH+L + GDLR++Q +LGH  +++TQ+Y
Sbjct: 248 AQRQIQTRMKRNAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVY 307

Query: 299 TNVNSKNGGDWMMEIYDQTHPSITQK 324
           T+++ ++    + +IYDQ HP   +K
Sbjct: 308 TSLDFQH----LAKIYDQAHPRAKKK 329


>gi|46580064|ref|YP_010872.1| phage integrase family site specific recombinase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46449480|gb|AAS96131.1| site-specific recombinase, phage integrase family [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 294

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 150/302 (49%), Gaps = 22/302 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL++L +ERGL++ TL +Y  D    LI L  + EE+  +  + ++    +   +   R 
Sbjct: 4   WLEHLLVERGLAENTLAAYSAD----LIELQVFLEERGCL--LAEVDEQTLFMHVVDLRR 57

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  R+L R L+ ++ F  +            L + N K + +LP  L   +  T++  
Sbjct: 58  RGMAGRTLARHLATLRGFFAFAVGEGELEADPALFLENPKLARNLPDVLTRDEMATILAR 117

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L     +  +  R+  +L L+Y  GLR+SE  +L P +       +R+ GKG K RIV
Sbjct: 118 PDL-----SDRLGFRDRTMLELMYAAGLRVSELCALRPLDFDAQAGVVRVFGKGAKERIV 172

Query: 201 PLLPSVRKAILEYY--DLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           P+   V  A++  Y  D  P F     ++  +F    GK L+     + +++     G+ 
Sbjct: 173 PV-HHVSCALVTAYLRDWRPAFS---PVEPAMFLNRSGKGLSRQAVWKVVKRHVAEAGIH 228

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + HT RHSFATHLL  G DLRS+Q +LGH  +S T+IYT+V +    D +  I++  
Sbjct: 229 KDISPHTFRHSFATHLLEGGADLRSVQLLLGHADISATEIYTHVQA----DRLRRIHNAH 284

Query: 318 HP 319
           HP
Sbjct: 285 HP 286


>gi|332678853|gb|AEE87982.1| Tyrosine recombinase xerD [Francisella cf. novicida Fx1]
          Length = 292

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/300 (31%), Positives = 146/300 (48%), Gaps = 18/300 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L NL +E GLS+ ++ SY  D    L FL  Y  +   I     L + ++ AFIS R  
Sbjct: 8   FLDNLWLEHGLSQNSISSYRTD----LKFLQNYFAKTDLIS----LDFEQLYAFISYRSK 59

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                RS  R +S ++ F  +L     T  +    +   K +  LP+ + E         
Sbjct: 60  NGYSSRSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDV-----E 114

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL     T+ +  R+ A+L L+Y  GLR+SE + L   +I  +   +++ GKG K RIV
Sbjct: 115 RLLQAPDMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIV 174

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+     + + +Y+      L+ N  +  +F     K +    F   I+      G+   
Sbjct: 175 PIGEYALEYLQKYFAEARTSLSKNFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTD 234

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLRS+Q +LGH  +STT IYT+++       +  IY + HP
Sbjct: 235 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR----LQVIYQKHHP 290


>gi|319775822|ref|YP_004138310.1| Site-specific recombinase XerD [Haemophilus influenzae F3047]
 gi|329123666|ref|ZP_08252226.1| tyrosine recombinase XerD [Haemophilus aegyptius ATCC 11116]
 gi|317450413|emb|CBY86629.1| Site-specific recombinase XerD [Haemophilus influenzae F3047]
 gi|327469865|gb|EGF15330.1| tyrosine recombinase XerD [Haemophilus aegyptius ATCC 11116]
          Length = 297

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 152/295 (51%), Gaps = 17/295 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           IE+GLS+ T+QSY  D      +L    +  ++++T   L   +++ F+ +R  +     
Sbjct: 16  IEKGLSENTVQSYRLDLTALCDWL---DKNGLSLET---LDAVDLQGFLGERLEKGYKAT 69

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R LS ++   +YL + K   +     + + K  + LP+ L E+Q      + LL+T 
Sbjct: 70  STARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQV-----SDLLNTP 124

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG+K RIVP+    
Sbjct: 125 DVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184

Query: 207 RKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHT 264
              + ++     P  LN      +F   R + +    F   ++       +     + H 
Sbjct: 185 AYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDAEALSPHV 244

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++++ HP
Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER----LKRLHERFHP 295


>gi|325271628|ref|ZP_08138130.1| site-specific tyrosine recombinase XerC [Pseudomonas sp. TJI-51]
 gi|324103232|gb|EGC00577.1| site-specific tyrosine recombinase XerC [Pseudomonas sp. TJI-51]
          Length = 299

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 156/310 (50%), Gaps = 29/310 (9%)

Query: 17  ERQ--NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ERQ   +  +L  ER +S+ TL  Y  D  + +   A+  E+ I     + L   ++R  
Sbjct: 2   ERQLEAYCAHLRSERQVSEHTLLGYRRDLDKVI---AYCKEQGIA--DWQALQIQQLRQL 56

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++        RSL R LS ++   +YL +  +        +   K    LP+ L+  +A
Sbjct: 57  VARLHHHGQASRSLARLLSAVRGLYRYLNREGLCQHDPAAGLSAPKGERKLPKVLDTDRA 116

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           L L+D  +     +  +I  R+ A+L L Y  GLR+SE  +L   ++      +++ GKG
Sbjct: 117 LQLLDGGV-----DDDFIARRDQAMLELFYSSGLRLSELSNLDLDHLDLAAGLVQVLGKG 171

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI----RGKPLNPGVFQRYIRQL 250
            K R++P+    R+A+ E+Y L        I  P  R +    +G  ++P   Q+ ++ +
Sbjct: 172 GKARVLPVGRKAREALKEWYRL------RGIGNPRDRAVFITRQGNRISPRTVQQRVKAV 225

Query: 251 -RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             R LG  L    H LRHSFA+H+L +  DLR++Q +LGH  +STTQIYT+++ ++    
Sbjct: 226 GERELGQHLHP--HMLRHSFASHVLESSQDLRAVQEMLGHADISTTQIYTHLDFQH---- 279

Query: 310 MMEIYDQTHP 319
           +  +YD  HP
Sbjct: 280 LAAVYDSAHP 289


>gi|83595067|ref|YP_428819.1| tyrosine recombinase XerD subunit [Rhodospirillum rubrum ATCC
           11170]
 gi|83577981|gb|ABC24532.1| tyrosine recombinase XerD subunit [Rhodospirillum rubrum ATCC
           11170]
          Length = 328

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 155/340 (45%), Gaps = 34/340 (10%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
           G+  P      L  + + +L+ +  ERG ++ T+++Y  D R +  FL     + +T+  
Sbjct: 7   GDTAPSSRGPSLAVQAEAFLEMMLAERGAARRTVEAYGRDLRDYAAFLREKGLDGLTV-- 64

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
               S   +RA+++      +  RS  R LS ++ F  +L       +   + + + +  
Sbjct: 65  ----SRPTLRAYLATMAAAGLAPRSQARKLSCLRQFHGFLVSEGRRPDDPTIGLDSPRLG 120

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             LPR L+E +    VD +L+           R   +L LLY  GLR+SE +SL      
Sbjct: 121 RPLPRVLSEAE----VDALLVAAEAGEGARGLRARVLLELLYSTGLRVSELVSLPLSVAN 176

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP----- 237
            D  T+ ++GKGDK R+VPL    R A+ ++    P        LP     R +      
Sbjct: 177 RDPETILVRGKGDKERLVPLGLPARAALRDWLIARP------TTLPASGAARRRADRFLF 230

Query: 238 --------LNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
                   L    F + + +L    G+ P   + H LRH FA+H+L++G DLR +Q++LG
Sbjct: 231 PSSAAEGHLTRDGFAKMLGELALRAGIDPARVSPHVLRHCFASHMLAHGADLRGVQTLLG 290

Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           H  ++TTQIYT+V      D +  +    HP    K + N
Sbjct: 291 HADIATTQIYTHVLD----DRLTTLVRTAHPLARLKGEGN 326


>gi|166710518|ref|ZP_02241725.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 345

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 151/314 (48%), Gaps = 27/314 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-----RQLSYTEIRAF 74
            +L  L++ER +S  TL +Y  D    + +      E    QT       QL    +R F
Sbjct: 46  EFLTYLQVERQVSAHTLDAYRRDLAALVAWTGERNTEDGAQQTATPVDSAQLDSAHLRQF 105

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++    + +  +SL+R LS  +S+  +L K      S    +R  K    LP+ L+  +A
Sbjct: 106 VAAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIAASPAAALRAPKAPRKLPQVLDADEA 165

Query: 135 LTLVDNVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           + LV+             DA    R+ A+L L Y  GLR+SE  +L  +++  D   + +
Sbjct: 166 VRLVEVP----------TDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVMV 215

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG K R+VP+      A+ ++      D   +    +F G  G  ++    Q  I+QL
Sbjct: 216 LGKGSKQRLVPVGSHAIAALRQWRR----DSGASADAHVFPGRAGGAISQRAVQIRIKQL 271

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+      H LRHSFA+H+L + GDLR +Q +LGH  ++TTQIYT+++ ++    +
Sbjct: 272 AVRQGMFKDVHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQH----L 327

Query: 311 MEIYDQTHPSITQK 324
            ++YD  HP   +K
Sbjct: 328 AKVYDAAHPRARRK 341


>gi|229846398|ref|ZP_04466506.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           7P49H1]
 gi|229810491|gb|EEP46209.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           7P49H1]
          Length = 297

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 152/295 (51%), Gaps = 17/295 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           IE+GLS+ T+QSY  D      +L    +  ++++T   L   +++ F+ +R  +     
Sbjct: 16  IEKGLSENTVQSYRLDLTALCDWL---DKNDLSLET---LDAVDLQGFLGERLEKGYKVT 69

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R LS ++   +YL + K   +     + + K  + LP+ L E+Q      + LL+T 
Sbjct: 70  STARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQV-----SDLLNTP 124

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG+K RIVP+    
Sbjct: 125 DVDVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184

Query: 207 RKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHT 264
              + ++     P  LN      +F   R + +    F   ++       +     + H 
Sbjct: 185 AYWVRQFMLYGRPVLLNRQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADALSPHV 244

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++++ HP
Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER----LKRLHERFHP 295


>gi|222035509|emb|CAP78254.1| Tyrosine recombinase xerC [Escherichia coli LF82]
 gi|312948364|gb|ADR29191.1| site-specific tyrosine recombinase XerC [Escherichia coli O83:H1
           str. NRG 857C]
 gi|324007468|gb|EGB76687.1| tyrosine recombinase XerC [Escherichia coli MS 57-2]
          Length = 298

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 155/307 (50%), Gaps = 17/307 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+   RQ    + F +E    +Q+ +Q   T +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIIHFASEN--GLQSWQQCDVTMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHP 319
           +YD THP
Sbjct: 286 VYDATHP 292


>gi|327537504|gb|EGF24226.1| site-specific DNA tyrosine recombinase, XerD [Rhodopirellula
           baltica WH47]
          Length = 317

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 152/308 (49%), Gaps = 30/308 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L+ E  L+  T+ +Y  D ++F+ ++       +TI        TE+  F++   
Sbjct: 30  EFLVYLKRECHLADNTVAAYGRDMKRFVTWMDGRRPADLTI--------TELSDFVASLH 81

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +   S+ R++  I++F KYL+   IT ++    +   K    +P  L+  +    + 
Sbjct: 82  GEGLAPASISRAIVAIRTFFKYLQLEGITVDNPAELLATQKAWQRMPGVLSPNEVEAFLS 141

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            V      ++ W   R+ A+L +LY  G R SE  +L  +++  D+ TLR  GKGDK R+
Sbjct: 142 AV---KKSDSFW--QRDRALLEVLYATGCRASEVCTLRVRDLTLDEKTLRCHGKGDKQRM 196

Query: 200 VPLLPSVRKAILEY--------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           VP+     ++I  Y         D  P  ++   +L L RG  GK L+     R +++  
Sbjct: 197 VPIGGRAIRSIQLYLEESRHILADRNPGQID---ELFLSRG--GKALDRIQLWRLVKRYA 251

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +  G+    + H+LRHSFATHLL+ G DLR +Q +LGH  + TTQIYT+V        + 
Sbjct: 252 KRAGISDEISPHSLRHSFATHLLAGGADLRQVQEMLGHASIQTTQIYTHVEHSR----LQ 307

Query: 312 EIYDQTHP 319
            ++   HP
Sbjct: 308 RVHRDFHP 315


>gi|224476610|ref|YP_002634216.1| putative site-specific recombinase XerD [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|222421217|emb|CAL28031.1| putative site-specific recombinase XerD [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 299

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 156/305 (51%), Gaps = 21/305 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE---IRAFI 75
           + +L+ ++IE+GLS  T+ +Y  D  ++        +E + ++ I  + + +   I+  +
Sbjct: 10  EEYLKFIQIEKGLSANTIGAYRRDLNKY--------KEYLVLKKINNIDFIDREIIQQCL 61

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                     +S+ R +S ++SF ++  + +   +   + +   K    LP  L+ +  L
Sbjct: 62  GYLHDDGHSAKSIARFISTVRSFHQFALRERYAAKDPTVLIETPKYERRLPDVLDVEDVL 121

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L     L T   +K    R+  IL LLY  G+R++E + +  +++      +R+ GKG 
Sbjct: 122 AL-----LETPDLSKNNGYRDRTILELLYATGMRVTELIHVRVEDVNLIMGFVRVFGKGS 176

Query: 196 KIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K RI+PL  +V   + +Y +   P  L   +   LF  + GKPL+     + I+Q     
Sbjct: 177 KERIIPLGETVIDYLKKYIETVRPQLLKQTVTDVLFLNLHGKPLSRQGIWKLIKQYGVKA 236

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            +    T H+LRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y
Sbjct: 237 NIKKKLTPHSLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMY 292

Query: 315 DQTHP 319
           ++ HP
Sbjct: 293 NEFHP 297


>gi|307300528|ref|ZP_07580308.1| tyrosine recombinase XerD [Sinorhizobium meliloti BL225C]
 gi|306904694|gb|EFN35278.1| tyrosine recombinase XerD [Sinorhizobium meliloti BL225C]
          Length = 311

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 155/313 (49%), Gaps = 14/313 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ +  ERG +  TLQSYE D      FL      +     +   S  ++R+++S  
Sbjct: 10  EAFLEMMSAERGAAANTLQSYERDLEDARSFL------RSRGTGLTDASADDLRSYLSHL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R LS ++ F K+L    + T+     +   KK+ +LP+ L+ +    L+
Sbjct: 64  AGQGFKASSQARRLSALRQFYKFLYAEGLRTDDPTGILDAPKKARTLPKTLSIEDVTRLI 123

Query: 139 DNVLLHTSHETKWIDA--RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
                     +  + A  R  A++ LLY  G+R+SE +SL    +  +   L I+GKG+K
Sbjct: 124 GQAEAEAKSGSDDVMAKLRMHALIELLYATGMRVSELVSLPASVLAQNGRFLIIRGKGNK 183

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+VPL  +  +A+  Y +    +   +  L    G  G  L   VF R ++ L    G+
Sbjct: 184 ERLVPLSQAAIRAMRAYGEALQEESADSPWLFPSNGKSGH-LPRQVFARDLKSLAARAGI 242

Query: 257 PLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            ++    H LRH+FA+HLL+NG DLR++Q +LGH  +STTQIYT+V  +     + ++  
Sbjct: 243 RVAAIWPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEER----LHDLVQ 298

Query: 316 QTHPSITQKDKKN 328
             HP   Q  K++
Sbjct: 299 NHHPLAKQAKKQD 311


>gi|88705495|ref|ZP_01103205.1| site-specific recombinase [Congregibacter litoralis KT71]
 gi|88700008|gb|EAQ97117.1| site-specific recombinase [Congregibacter litoralis KT71]
          Length = 312

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 156/313 (49%), Gaps = 17/313 (5%)

Query: 15  LKER-QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L ER   +L+ L   R LS  T+ +Y+ D   F  F      +  ++Q   ++  + +R 
Sbjct: 11  LDERISAFLEYLRSVRRLSPHTVAAYQRDLGSFRAFC-----DAQSLQDCDEVQESHVRQ 65

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++++   + +   SL+R LS ++++ ++         +  L ++  +K   LP  L   Q
Sbjct: 66  WLAQGHRRSLAPNSLQRQLSALRAYFEWESSDTGRRRNPALAVQAPRKRRKLPGTLEADQ 125

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                  V L    E   +  R+ A+  L Y  GLR+ E  ++   +I   QS + + GK
Sbjct: 126 V-----GVYLRADAEDP-LQLRDLAMAELFYSSGLRLGELRAVNLYDIDRGQSLISVTGK 179

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R VP+  +   AI  Y    P  ++ + Q  LF   RG+ ++    Q  ++ L   
Sbjct: 180 GSKTRTVPVGSAAIAAIDAYLPHRPAAVSDDDQEALFLSSRGRRISERSIQSRVQLLAER 239

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL      H LRHSFA+HLL + GDLR++Q +LGH  +STTQIYT+++ ++    + ++
Sbjct: 240 NGLGRDVHPHMLRHSFASHLLESSGDLRAVQELLGHSDISTTQIYTHLDFQH----LAKV 295

Query: 314 YDQTHP-SITQKD 325
           YD +HP +  QKD
Sbjct: 296 YDGSHPRARKQKD 308


>gi|110635391|ref|YP_675599.1| site-specific tyrosine recombinase XerD [Mesorhizobium sp. BNC1]
 gi|110286375|gb|ABG64434.1| tyrosine recombinase XerD subunit [Chelativorans sp. BNC1]
          Length = 308

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 147/308 (47%), Gaps = 17/308 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ +  ERG S  TL SY  D      +L      +     + + S  +IR +++  
Sbjct: 8   EAFLEMMAAERGASDNTLASYRRDLGDADAYL------EAPCGGVFKASAADIRKYLADM 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     +  R LS ++ F K+L    +  +     + + KK   LP+ L+E +   L+
Sbjct: 62  TARGFASTTQARKLSSLRQFFKFLYSEGMRDDDPTGVLDSPKKGRPLPKTLSESEMNALL 121

Query: 139 DNVLLHTSHETKWIDARNSA-----ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           +              AR +A     +L +LY  GLR+SE +SL  +  + D+    ++GK
Sbjct: 122 ERAADEAREAPAGTPARVAAQRLSTLLEMLYASGLRVSELVSLPLRVALRDERFFTVRGK 181

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRR 252
           G K R+VPL    R+A+  +        +      LF  +     L+  VF R ++ L  
Sbjct: 182 GGKERMVPLSAKAREAVALWLKERARHPSFANSPWLFPAVSASGYLSRQVFARELKGLAG 241

Query: 253 YLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             G+  +  + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V  K     + 
Sbjct: 242 RAGISTAKISPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHVLEKR----LQ 297

Query: 312 EIYDQTHP 319
           E+  + HP
Sbjct: 298 ELVQKHHP 305


>gi|320535370|ref|ZP_08035484.1| putative site-specific tyrosine recombinase XerD [Treponema
           phagedenis F0421]
 gi|320147772|gb|EFW39274.1| putative site-specific tyrosine recombinase XerD [Treponema
           phagedenis F0421]
          Length = 255

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 146/263 (55%), Gaps = 23/263 (8%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           FI  R    I  ++  + ++ + SF ++L    +  ++   N+   ++  +LPR L+ ++
Sbjct: 3   FIISRSEAGIMGKTTAKDIAALNSFYRFLILENVRQDNPAENIEAPRREKNLPRVLSPEE 62

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D++ L++ +       R+ A+  L+Y  GLR+SE + L+ ++I  D+  L++ GK
Sbjct: 63  VDLLLDSIPLNSPN-----GIRDRALFELIYSAGLRVSEVVGLSLEDIFFDEQLLKVTGK 117

Query: 194 GDKIRIVPLLPSVRKAILEYYD------LCP-FDLNLNIQLPLFRGIRGKPLN-PGVFQR 245
           G K RIVP     ++ +  Y D      + P +  N   +  +F    GK L+  G+++R
Sbjct: 118 GSKERIVPFGKQAKQQLQNYIDGARKAFIKPQYTENTETRGAVFLNKNGKRLSRKGIWKR 177

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            ++++    G+  +T  HTLRHS+ATHLL+ G DLRS+Q +LGH  +STTQIYT++ +  
Sbjct: 178 -LQEIEVISGI--NTKVHTLRHSYATHLLAGGADLRSVQCLLGHADISTTQIYTHIETDE 234

Query: 306 GGDWMMEIYDQTHPSITQKDKKN 328
                +E+Y +     T+K+K N
Sbjct: 235 -----LEMYHKEF--FTEKEKTN 250


>gi|306836381|ref|ZP_07469359.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726]
 gi|304567741|gb|EFM43328.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726]
          Length = 305

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 144/297 (48%), Gaps = 31/297 (10%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +G ++ T++ Y  D +          +E   I T    +   +R ++     +     +L
Sbjct: 32  KGRAEATVRGYRADLKNL-------AQE---IDTFADFNLNNLRQWLGNAVAEGKARATL 81

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R  + +K+F  + ++ +  T      +   K    LP  +  +QA  LV N +  +  E
Sbjct: 82  ARRTASVKAFSTWAERERYLTRDVAARLVTPKVGQHLPTVMAPQQAGELVGNAV--SVDE 139

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
             +   R+SAIL LLY  G+R++E + L  +++   +ST R+ GKG+K R+VP   +   
Sbjct: 140 AHF--QRDSAILELLYATGMRVAELVRLDLEDVDFKRSTARVTGKGNKQRVVPFGAAATD 197

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA------ 262
           A+ ++ D    ++       +F G RG  ++        RQ+RR +    + T       
Sbjct: 198 ALQQWIDGGRKEMARGETQAIFVGSRGARIDQ-------RQVRRIVDKAATVTGTSGLTP 250

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           H +RH  ATHLL  G DLR +Q +LGH  LSTTQIYT+V++K     + ++Y Q HP
Sbjct: 251 HGVRHLAATHLLEGGADLRVVQELLGHSSLSTTQIYTHVSAKR----LKQVYSQAHP 303


>gi|220917980|ref|YP_002493284.1| tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955834|gb|ACL66218.1| tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 343

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 143/313 (45%), Gaps = 23/313 (7%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E+ +E + +   L  E+  S  T ++Y+ D  Q+  +LA         Q +   S   +R
Sbjct: 11  EVPEEIRRFDAYLASEKRASPHTRKAYQVDLAQYAAYLADQG------QPLVPSSPALVR 64

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F++ R+    G  SL R LS ++S  ++L +  +   +    + + K+   LP  L E+
Sbjct: 65  GFLA-RQAGAAGAVSLGRKLSALRSLYRFLVREGLAPGNPARAVASPKRPKRLPEVLPEE 123

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   LV+     T      +  R+ A L LLYG GLR+SE   L  +++      +R+ G
Sbjct: 124 EVAALVETPDAATEAP---LALRDRAFLELLYGSGLRVSELTGLDLEDLDLAGGLVRVLG 180

Query: 193 KGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           K +K RIVP       A+  Y D     L     +      +F   RG  L      R +
Sbjct: 181 KRNKERIVPFGAPAADALRRYLDGARPVLAAGPDHARAGDAVFLNFRGGRLTSRSVARRL 240

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                  GLP     H LRH FATHLL NG DLR IQ +LGH  LSTTQ YT++      
Sbjct: 241 DGWVLASGLPRHVHPHVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTHL------ 294

Query: 308 DW--MMEIYDQTH 318
           DW  +  +YD  H
Sbjct: 295 DWKRLAAVYDAAH 307


>gi|269956359|ref|YP_003326148.1| tyrosine recombinase XerD [Xylanimonas cellulosilytica DSM 15894]
 gi|269305040|gb|ACZ30590.1| tyrosine recombinase XerD [Xylanimonas cellulosilytica DSM 15894]
          Length = 331

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 154/333 (46%), Gaps = 37/333 (11%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +VS  L     ++L +L +ERGLS  T  +Y  D  +++  L     E++   ++  +  
Sbjct: 11  VVSGPLEAALDDYLAHLRVERGLSHNTTAAYRRDLARYVRHL-----ERLGRTSLGAVRE 65

Query: 69  TEIRAFISKRRTQKIGD-----RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
            ++  F++  R    G       S  R+L+ ++ + ++     + T+     +R   +  
Sbjct: 66  DDVTGFVTAVREGADGGARLSASSTARALAAVRGWHRFAHAEGLATQDPAAEVRAPTQLR 125

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL------- 176
            LP AL+      L+D   +        +  R+ A+L LLY  G RISE + L       
Sbjct: 126 RLPHALSVDAVTRLLDAAGVGDGP----VPLRDRALLELLYSTGGRISEVVGLDVDALGW 181

Query: 177 -----TPQNIMDDQ--STLRIQGKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQL 227
                 P +   D   + +R+ GKGDK RIVP+  S   A L+ Y     P         
Sbjct: 182 LGAGSAPGDGAGDDGPAVVRLHGKGDKQRIVPV-GSYAIAALDAYLVRARPALAAAGSGT 240

Query: 228 P-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           P LF   RG+PL+       ++      GL  + + HTLRHSFATHLL  G D+R +Q +
Sbjct: 241 PALFLNTRGRPLSRQSAWAVLQAASARAGLE-NVSPHTLRHSFATHLLQGGADVRVVQEL 299

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           LGH  ++TTQIYT V      D + E+Y  THP
Sbjct: 300 LGHASVTTTQIYTMVTP----DTLREVYAATHP 328


>gi|171742548|ref|ZP_02918355.1| hypothetical protein BIFDEN_01661 [Bifidobacterium dentium ATCC
           27678]
 gi|283456366|ref|YP_003360930.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium dentium
           Bd1]
 gi|171278162|gb|EDT45823.1| hypothetical protein BIFDEN_01661 [Bifidobacterium dentium ATCC
           27678]
 gi|283103000|gb|ADB10106.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium dentium
           Bd1]
          Length = 318

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 158/318 (49%), Gaps = 28/318 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L ++++ERGLSK T+ +Y  D  +++ +L      +  I  +  ++   +  +++  
Sbjct: 9   RQFLAHIDVERGLSKATVCAYGSDLHKYVSWL-----HEQGIHDLDDVTTRHVEEYVASL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  RS  R L+ I +F ++     +  +     ++  K +++LP  L+  + + L+
Sbjct: 64  DDSGESARSKARRLASIHAFHRFALSEHVVHDDVAAQVKAPKGASTLPDVLSVDEVMRLM 123

Query: 139 DNVLLHTSHETK--WIDA--------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           D++ L   H+ K    DA        R+ A+L  +Y  G R+SEA  +   +I  D    
Sbjct: 124 DSIPLSRHHDGKQGHGDAAADDPVMLRDKALLEFMYATGSRVSEACGVDLDDIDLDDKVA 183

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGI----RGKPLNPGVF 243
           R+ GKG K R+VP+     +A+  Y     P   + +      R +    RGK L+    
Sbjct: 184 RLMGKGSKQRLVPVGSFACEALRRYLRFGRPVLQSKSKGAAEHRAVFLNKRGKRLSRQSV 243

Query: 244 QRYIRQL--RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              IR    R ++  PL    HTLRHSFATHL+  G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 244 WEIIRTAGERAHITKPLHP--HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHV 301

Query: 302 NSKNGGDWMMEIYDQTHP 319
           + +N    ++E Y   HP
Sbjct: 302 SPEN----LIEAYLTAHP 315


>gi|58583617|ref|YP_202633.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58428211|gb|AAW77248.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 347

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 150/310 (48%), Gaps = 19/310 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-----RQLSYTEIRAF 74
            +L  L++ER +S  TL +Y  D    + +      E    QT       QL    +R F
Sbjct: 48  EFLTYLQVERQVSAHTLDAYRRDLAALVAWTGERNAEDGAQQTATPVDSAQLDSAHLRQF 107

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++    + +  +SL+R LS  +S+  +L K      S    +R  K    LP+ L+  +A
Sbjct: 108 VAAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIAASPAAALRAPKAQRKLPQVLDADEA 167

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           + LV+            +  R+ A+L L Y  GLR+SE  +L  +++  D   + + GKG
Sbjct: 168 VRLVEVP------TDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVMVLGKG 221

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K R+VP+      A+ ++      D   +    +F G  G  ++    Q  I+QL    
Sbjct: 222 SKQRLVPVGSHAIAALRQWRR----DSGASADAHVFPGRTGGAISQRAVQIRIKQLAVRQ 277

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+      H LRHSFA+H+L + GDLR +Q +LGH  ++TTQIYT+++ ++    + ++Y
Sbjct: 278 GMFKDVHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQH----LAKVY 333

Query: 315 DQTHPSITQK 324
           D  HP   +K
Sbjct: 334 DAAHPRARRK 343


>gi|297569003|ref|YP_003690347.1| tyrosine recombinase XerC [Desulfurivibrio alkaliphilus AHT2]
 gi|296924918|gb|ADH85728.1| tyrosine recombinase XerC [Desulfurivibrio alkaliphilus AHT2]
          Length = 330

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 153/346 (44%), Gaps = 55/346 (15%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + S  L +    +L+ L++E+G S  T+ SY  D  +F    A        ++ + QL  
Sbjct: 1   MTSDRLAEHVDGFLRWLQVEKGYSPHTVSSYRRDLDEF----AALDRGAGPLERVDQLDA 56

Query: 69  TEIRAFI----SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
             +RAF+     + R+      S+ R LS +++F +YL+K  +        +   K    
Sbjct: 57  RRVRAFVYSLHGRNRSS-----SVARKLSALRTFFRYLQKNGVIAHDPAAAVAAPKAEGY 111

Query: 125 LPRALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           LP  L+       VD V  LL          AR+ A+L LLY  G+R++E  +L  + + 
Sbjct: 112 LPTVLS-------VDEVFSLLEMPGPADTYAARDRAMLELLYSTGMRVAELAALNLEQLD 164

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC------------------------- 217
             +  +R++GKG+K R+VP+     +A+  Y                             
Sbjct: 165 LAEGMVRVRGKGNKERLVPIGTPACEAVQAYLPQREVLLRAAKREREEPQEEKPPAPAGG 224

Query: 218 ----PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
               P       + PL    RG  L     +R ++      G+    + H LRHSFATHL
Sbjct: 225 KRSRPARREAAQEQPLLLNARGGRLTTRSIERLVKLYAERAGIAARVSPHALRHSFATHL 284

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           L  G DLR++Q +LGH  LSTTQ YT++N     D +  +YD+ HP
Sbjct: 285 LEMGADLRTVQELLGHASLSTTQRYTHLNL----DHLTAVYDKAHP 326


>gi|224537518|ref|ZP_03678057.1| hypothetical protein BACCELL_02397 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520831|gb|EEF89936.1| hypothetical protein BACCELL_02397 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 316

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/291 (32%), Positives = 147/291 (50%), Gaps = 24/291 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT--EIRAFIS 76
           + + Q L++E+ LS  TL +Y  D  + L FL          + I  LS T  +++ F +
Sbjct: 18  RKYQQYLKLEKALSANTLDAYLTDLDKLLRFL--------KAENIDMLSVTLDDLQRFAA 69

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                 I  RS  R +SGIKSF  +L       +     +   K    LP  L  ++  T
Sbjct: 70  GLHDIGIHPRSQARIMSGIKSFFHFLIMADYREDDPSELLEGPKIGFKLPEVLTVEEIDT 129

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           ++  V +     +K    RN AIL  LY CGLR+SE  +L    +  D+  ++++GKG K
Sbjct: 130 IIATVDM-----SKKEGQRNRAILETLYSCGLRVSELCNLKLSELYFDEGFIKVEGKGSK 184

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLN-----IQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            R+VP+ P   K I +Y+ L   D NL       +  +F    G  ++  +    I++L 
Sbjct: 185 QRLVPISPRAIKEI-KYWLL---DRNLGKIKKGFEDYVFLARWGNSISRIMVFHLIKELA 240

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              G+  + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++
Sbjct: 241 EKAGITKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHID 291


>gi|78186473|ref|YP_374516.1| tyrosine recombinase XerD [Chlorobium luteolum DSM 273]
 gi|78166375|gb|ABB23473.1| Tyrosine recombinase XerD [Chlorobium luteolum DSM 273]
          Length = 306

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 151/302 (50%), Gaps = 13/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L IER  +  T +SY  D  ++L+ +    E+ + ++ I   +   I  F+   
Sbjct: 15  EGFLDYLFIERNFAGNTRESYRNDLGRYLLAM---QEDDVPLEAI---TAERINHFVLAL 68

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +   S+ R++S I+S  ++L        +    +   K++  LP  L  ++   ++
Sbjct: 69  HQAGLEPSSIARNVSAIRSLHRFLFNEHRLASNPAETLHQPKQARYLPAVLTLQETERVL 128

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +  +L +      +  R+ AIL LLY  G+R++E + +T QN+  D+  +RI GKG K R
Sbjct: 129 EAPMLQSPPGRFLL--RDRAILELLYASGIRVTELVDMTQQNLYLDERFIRIFGKGSKER 186

Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+  +    I  Y +     L N N    LF   RG+ L        +++  R  G+ 
Sbjct: 187 LVPIGDAAAAWIRRYREELRMKLSNRNSLDHLFLNARGRKLTRMAVYNMVKEYARLAGIE 246

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + + HT RH+FATHLL  G DLR++Q +LGH  +  TQIYT+++      ++ E++   
Sbjct: 247 KNISPHTFRHTFATHLLEGGADLRAVQEMLGHSSIVATQIYTHIDRT----FVKEVHRTC 302

Query: 318 HP 319
           HP
Sbjct: 303 HP 304


>gi|317121982|ref|YP_004101985.1| tyrosine recombinase XerD [Thermaerobacter marianensis DSM 12885]
 gi|315591962|gb|ADU51258.1| tyrosine recombinase XerD subunit [Thermaerobacter marianensis DSM
           12885]
          Length = 401

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 146/305 (47%), Gaps = 16/305 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+ L +ERGL+  TL++Y                E+      R L    + A++   R
Sbjct: 23  EYLEILRVERGLAARTLEAYR--RDLADFAAFAAGRERGPEAVTRSL----VMAYLHHLR 76

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  ++ R L+ ++ F +YL +    ++  +  M   +    LPR ++  +      
Sbjct: 77  QAGRAHTTVARRLAALRGFFRYLVEEGRLSQDPVEGMTAPRAGRPLPRVMSVAEV----- 131

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             +L           R+ A+L LLY  GLR+SE + L   +++ D   LR +GKG K R+
Sbjct: 132 ERMLEVPQPPSPAGLRDRAVLELLYATGLRVSELVGLDLDDLLLDHGLLRCRGKGGKERV 191

Query: 200 VPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+ P   +A   Y +   P       Q  LF   RG  L+       +R+  R  G+  
Sbjct: 192 VPVAPPAVEATRIYLERGRPHLCRRPSQRALFLNHRGGRLSRQWVWHLLRRAARRAGVSR 251

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + + HT+RHSFATHLL+ G DLR++Q +LGH  +STTQIYT++   +    ++E Y + H
Sbjct: 252 AVSPHTIRHSFATHLLAGGADLRAVQELLGHADISTTQIYTHLTRHH----LLEAYLKAH 307

Query: 319 PSITQ 323
           P + Q
Sbjct: 308 PRLAQ 312


>gi|170760942|ref|YP_001787191.1| tyrosine recombinase XerD [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407931|gb|ACA56342.1| tyrosine recombinase XerD [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 291

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 161/301 (53%), Gaps = 17/301 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N++++L+ ++ LSK TL++Y  D  +F  F+    E+ +++ T+       I AF+   
Sbjct: 6   ENYIKDLQ-KKNLSKNTLEAYRRDVEKFSEFVRNREEKMLSVDTV------TIMAFVQYL 58

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + +     S+ R++  I++F KYL K+ + +E   L     K   ++P+ L+ ++    V
Sbjct: 59  QREGRATSSIVRNIVSIRNFYKYLIKKNMISEDPTLGYEIPKIERTIPKILSVEE----V 114

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D +L       K +  R+ A+L L+Y  G++I+E L+L   +I    + ++ +G   + R
Sbjct: 115 DKLLNSPDSSKKGL--RDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRER 172

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           I+P+     K +  Y ++ P     N+   LF  ++G  +    F + I+   +   +  
Sbjct: 173 IIPIGSYAIKCLKNYLEVRPAINVYNLDY-LFLNLKGTQMTRQGFWKIIKFYAKEASIDK 231

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
              ++TLRHSFA HLL NG D++S+Q +LGH  L+ TQIY++++ K+    + E+Y   H
Sbjct: 232 EIDSYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSK---IAEVYKNAH 288

Query: 319 P 319
           P
Sbjct: 289 P 289


>gi|160891605|ref|ZP_02072608.1| hypothetical protein BACUNI_04058 [Bacteroides uniformis ATCC 8492]
 gi|317478317|ref|ZP_07937481.1| tyrosine recombinase XerD [Bacteroides sp. 4_1_36]
 gi|156859012|gb|EDO52443.1| hypothetical protein BACUNI_04058 [Bacteroides uniformis ATCC 8492]
 gi|316905476|gb|EFV27266.1| tyrosine recombinase XerD [Bacteroides sp. 4_1_36]
          Length = 317

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/294 (31%), Positives = 150/294 (51%), Gaps = 18/294 (6%)

Query: 16  KERQN-----WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           KE+Q      + Q L++E+ LS  T+ +Y+ D ++ L FL     E I I      +  +
Sbjct: 10  KEKQTLIIRKYHQYLKLEKALSPNTVDAYQTDLQKLLHFLE---GEGIAIL---DTTLDD 63

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           ++ F S      I  RS  R LSGIKSF  +L             +   K    LP  L 
Sbjct: 64  LQHFASGLHDIGIHPRSQARILSGIKSFFHFLVMADYLEGDPSELLEGPKIGFKLPEVLT 123

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            ++   ++  + L T+        RN AIL  LY CGLR+SE  +L   ++  D+  +++
Sbjct: 124 VEEIDRIISAIDLGTNE-----GQRNRAILETLYSCGLRVSELCNLKISDLYFDEGFIKV 178

Query: 191 QGKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           +GKG K R+VP+     K I  ++      + +  + +  +F    GK ++  +    I+
Sbjct: 179 EGKGSKQRLVPISSRAIKEIRNWFVDRNGGWKIKKDFEDYVFLARWGKNISRIMVFHLIK 238

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +L +  G+  + + HT RHSFATHLL  G +LR+IQS+LGH  ++TT+IYT+++
Sbjct: 239 ELAKKAGITKNISPHTFRHSFATHLLEGGANLRAIQSMLGHESIATTEIYTHID 292


>gi|148267742|ref|YP_001246685.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus JH9]
 gi|150393800|ref|YP_001316475.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus JH1]
 gi|189030083|sp|A6U170|XERC_STAA2 RecName: Full=Tyrosine recombinase xerC
 gi|189030084|sp|A5ISD6|XERC_STAA9 RecName: Full=Tyrosine recombinase xerC
 gi|147740811|gb|ABQ49109.1| tyrosine recombinase XerC subunit [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946252|gb|ABR52188.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus JH1]
          Length = 298

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 166/322 (51%), Gaps = 42/322 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +L  L++ER  S+ TL+SY+ D  QF  FL    +E + ++T     Y + R ++S 
Sbjct: 5   QEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLE---QEHLQLKT---FEYRDARNYLSY 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNEKQ 133
             +  +   S+ R +S +++F +Y     +T + NI+N    + + KK   LP+   E++
Sbjct: 59  LYSNHLKRTSVSRKISTLRTFYEYW----MTLDENIINPFVQLVHPKKEKYLPQFFYEEE 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L   V   TS      + R+  IL LLY  G+R+SE +++  Q+I    + + + GK
Sbjct: 115 MEALFKTVEEDTSK-----NLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDL------CPFD---LNLNIQLPLFRGIRGKPLNPGVFQ 244
           G K R VP     R++I  Y +       C  D   LN+  +    RG+R   LN  V  
Sbjct: 170 GSKERFVPFGAYCRQSIENYLEHFKPIQSCNHDFLILNMKGEAITERGVR-YVLNDIV-- 226

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
                 +R  G+      H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++
Sbjct: 227 ------KRTAGVS-EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQ 279

Query: 305 NGGDWMMEIYDQTHPSITQKDK 326
                + ++Y   HP   ++++
Sbjct: 280 Q----LRKVYLNAHPRAKKENE 297


>gi|238796542|ref|ZP_04640049.1| Tyrosine recombinase xerD [Yersinia mollaretii ATCC 43969]
 gi|238719520|gb|EEQ11329.1| Tyrosine recombinase xerD [Yersinia mollaretii ATCC 43969]
          Length = 299

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 153/303 (50%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER L++ TL SY  D      +L  +  + +   +       E+++F+++R
Sbjct: 10  EQFLDALWLERNLAENTLASYRLDLHALTGWLDHHGSDLLRAGS------QELQSFLAER 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q     
Sbjct: 64  IEGGYKATSSARLLSAMRRLFQYLYREKLRDDDPTAALSSPKLPQRLPKDLSEAQV---- 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            + LL+  +    ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K R
Sbjct: 120 -DALLNAPNVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKER 178

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       I  Y +   P+ +N      LF   R + +    F   I+      G+ 
Sbjct: 179 LVPLGEEAVYWIENYMEHGRPWLINGQALDVLFPSNRSQQMTRQTFWHRIKHYAILAGID 238

Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q
Sbjct: 239 SERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQQ 294

Query: 317 THP 319
            HP
Sbjct: 295 HHP 297


>gi|326335714|ref|ZP_08201900.1| site-specific tyrosine recombinase XerC [Capnocytophaga sp. oral
           taxon 338 str. F0234]
 gi|325692143|gb|EGD34096.1| site-specific tyrosine recombinase XerC [Capnocytophaga sp. oral
           taxon 338 str. F0234]
          Length = 296

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 151/301 (50%), Gaps = 14/301 (4%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E+  S  T+ +Y  D  +F  FL    EE  T++ + +++Y  IR++I      KI 
Sbjct: 9   LRLEKKYSPHTVTAYLTDVEEFAAFLK---EEDPTVE-LSKVNYPLIRSWIIHLVESKIT 64

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           +RS+ R ++ +K++  +L +      +       LK    L    +EK+    +++VL  
Sbjct: 65  NRSINRKIASLKAYYAFLVRSLAIKSTPFQQHIPLKTQKKLSIPFSEKE----IEDVLSI 120

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            + E  +   RN  I+ L Y  G+R SE + L   +I   Q T+++ GK +K RI+PL+ 
Sbjct: 121 PTEEDSYTSLRNRMIIELFYATGIRRSELIELKINDIDLSQKTIKVLGKRNKERIIPLIH 180

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           +V ++ LE Y L   D+  + +  LF    GK + P +    I      +      + H 
Sbjct: 181 TVVES-LEKYLLIRKDVETSEEF-LFLTNNGKKMYPKLVYNIINSYFSSVTTKQKKSPHV 238

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LRHSFATHLL NG DL +++ +LGH  L+ TQ+YT+    +    +   Y   HP  T K
Sbjct: 239 LRHSFATHLLDNGADLNAVKELLGHAGLAATQVYTH----SSIAELKNQYKNAHPRETNK 294

Query: 325 D 325
           +
Sbjct: 295 E 295


>gi|306822461|ref|ZP_07455839.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679]
 gi|309801460|ref|ZP_07695587.1| tyrosine recombinase XerD [Bifidobacterium dentium JCVIHMP022]
 gi|304554006|gb|EFM41915.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679]
 gi|308221975|gb|EFO78260.1| tyrosine recombinase XerD [Bifidobacterium dentium JCVIHMP022]
          Length = 318

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 156/318 (49%), Gaps = 28/318 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L ++++ERGLSK T+ +Y  D  +++ +L      +  I  +  ++   +  +++  
Sbjct: 9   RQFLAHIDVERGLSKATVCAYGSDLHKYVSWL-----HEQGIHDLDDVTTRHVEEYVASL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  RS  R L+ I +F ++     +  +     ++  K +++LP  L+  + + L+
Sbjct: 64  DDSGESARSKARRLASIHAFHRFALSEHVVHDDVASQVKAPKGASTLPDVLSVDEVMRLM 123

Query: 139 DNVLLHTSHETK--WIDA--------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           D++ L   H+ K    DA        R+ A+L  +Y  G R+SEA  +   +I  D    
Sbjct: 124 DSIPLSRHHDGKQGHGDAAADDPVMLRDKALLEFMYATGSRVSEACGVDLDDIDLDDKVA 183

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-----NLNIQLPLFRGIRGKPLNPGVF 243
           R+ GKG K R+VP+     +A+  Y       L            +F   RGK L+    
Sbjct: 184 RLMGKGSKQRLVPVGSFACEALRRYLRFGRPALQSKSKGAAEHRAVFLNKRGKRLSRQSV 243

Query: 244 QRYIRQL--RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              IR    R ++  PL    HTLRHSFATHL+  G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 244 WEIIRTAGERAHITKPLHP--HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHV 301

Query: 302 NSKNGGDWMMEIYDQTHP 319
           + +N    ++E Y   HP
Sbjct: 302 SPEN----LIEAYLTAHP 315


>gi|227889898|ref|ZP_04007703.1| site-specific recombinase XerD [Lactobacillus johnsonii ATCC 33200]
 gi|268319571|ref|YP_003293227.1| tyrosine recombinase XerC [Lactobacillus johnsonii FI9785]
 gi|227849342|gb|EEJ59428.1| site-specific recombinase XerD [Lactobacillus johnsonii ATCC 33200]
 gi|262397946|emb|CAX66960.1| tyrosine recombinase XerC [Lactobacillus johnsonii FI9785]
          Length = 307

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 150/316 (47%), Gaps = 18/316 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L+K+ Q++L     ER  SK T+ SY  D  +   F     +E        Q+   ++ 
Sbjct: 7   KLIKQFQDYLN---YERNYSKNTVNSYLNDLNEAKEFF----KENGGFSGWDQVKSRDVE 59

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F+    TQ     +  R +S ++SF ++L KR++     +  +        LP+   EK
Sbjct: 60  IFLQNLATQNRSRTTQARKMSSLRSFYRFLVKREVLDNDPMQTISLRLGEKKLPQFFYEK 119

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   + D++  H       +  RN A+  L Y  G+R+SE  SL    I  D   + + G
Sbjct: 120 EMRQVFDSLAGHEK-----LVVRNRAMFELFYATGMRLSEMASLKLDQIDFDLKIILVHG 174

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLP-LFRGIRGKPLNPGVFQRYIRQL 250
           KG+K R VP       A+ EY D    DL   N  L  +F   RG+ L     +  ++Q+
Sbjct: 175 KGNKDRYVPFGKDAANALKEYCDESRLDLLGKNEDLGYVFLNNRGQKLTGRGIEYIMQQV 234

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+      H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V  K+    +
Sbjct: 235 FIKAGVGGKVHPHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKH----L 290

Query: 311 MEIYDQTHPSITQKDK 326
              Y +  P   +KD+
Sbjct: 291 QADYQKFFPRKDKKDE 306


>gi|15924242|ref|NP_371776.1| site-specific recombinase XerC-like protein [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15926835|ref|NP_374368.1| hypothetical protein SA1095 [Staphylococcus aureus subsp. aureus
           N315]
 gi|156979573|ref|YP_001441832.1| site-specific recombinase XerC homologue [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|253315609|ref|ZP_04838822.1| hypothetical protein SauraC_05582 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255006039|ref|ZP_05144640.2| hypothetical protein SauraM_06200 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257795692|ref|ZP_05644671.1| tyrosine recombinase XerC [Staphylococcus aureus A9781]
 gi|258415916|ref|ZP_05682186.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|258421678|ref|ZP_05684602.1| tyrosine recombinase XerC [Staphylococcus aureus A9719]
 gi|258434834|ref|ZP_05688908.1| xerC protein [Staphylococcus aureus A9299]
 gi|258444590|ref|ZP_05692919.1| xerC protein [Staphylococcus aureus A8115]
 gi|258447577|ref|ZP_05695721.1| tyrosine recombinase xerC [Staphylococcus aureus A6300]
 gi|258449419|ref|ZP_05697522.1| tyrosine recombinase xerC [Staphylococcus aureus A6224]
 gi|258454798|ref|ZP_05702762.1| tyrosine recombinase XerC [Staphylococcus aureus A5937]
 gi|269202868|ref|YP_003282137.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282892740|ref|ZP_06300975.1| tyrosine recombinase XerC [Staphylococcus aureus A8117]
 gi|282927594|ref|ZP_06335210.1| tyrosine recombinase XerC [Staphylococcus aureus A10102]
 gi|295406188|ref|ZP_06815995.1| tyrosine recombinase XerC [Staphylococcus aureus A8819]
 gi|296274810|ref|ZP_06857317.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus MR1]
 gi|297244416|ref|ZP_06928299.1| tyrosine recombinase XerC [Staphylococcus aureus A8796]
 gi|54039882|sp|P67631|XERC_STAAN RecName: Full=Tyrosine recombinase xerC
 gi|54042779|sp|P67630|XERC_STAAM RecName: Full=Tyrosine recombinase xerC
 gi|166918904|sp|A7X1M7|XERC_STAA1 RecName: Full=Tyrosine recombinase xerC
 gi|13701052|dbj|BAB42347.1| xerC [Staphylococcus aureus subsp. aureus N315]
 gi|14247022|dbj|BAB57414.1| site-specific recombinase XerC homologue [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|156721708|dbj|BAF78125.1| site-specific recombinase XerC homologue [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|257789664|gb|EEV28004.1| tyrosine recombinase XerC [Staphylococcus aureus A9781]
 gi|257839252|gb|EEV63726.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|257842364|gb|EEV66789.1| tyrosine recombinase XerC [Staphylococcus aureus A9719]
 gi|257849195|gb|EEV73177.1| xerC protein [Staphylococcus aureus A9299]
 gi|257850083|gb|EEV74036.1| xerC protein [Staphylococcus aureus A8115]
 gi|257853768|gb|EEV76727.1| tyrosine recombinase xerC [Staphylococcus aureus A6300]
 gi|257857407|gb|EEV80305.1| tyrosine recombinase xerC [Staphylococcus aureus A6224]
 gi|257863181|gb|EEV85945.1| tyrosine recombinase XerC [Staphylococcus aureus A5937]
 gi|262075158|gb|ACY11131.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282590597|gb|EFB95674.1| tyrosine recombinase XerC [Staphylococcus aureus A10102]
 gi|282764737|gb|EFC04862.1| tyrosine recombinase XerC [Staphylococcus aureus A8117]
 gi|285816934|gb|ADC37421.1| Site-specific tyrosine recombinase [Staphylococcus aureus 04-02981]
 gi|294968776|gb|EFG44798.1| tyrosine recombinase XerC [Staphylococcus aureus A8819]
 gi|297178446|gb|EFH37692.1| tyrosine recombinase XerC [Staphylococcus aureus A8796]
 gi|312829646|emb|CBX34488.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315131045|gb|EFT87029.1| hypothetical protein CGSSa03_05869 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329727078|gb|EGG63534.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           21172]
          Length = 298

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 166/322 (51%), Gaps = 42/322 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +L  L++ER  S+ TL+SY+ D  QF  FL    +E + ++T     Y + R ++S 
Sbjct: 5   QEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLE---QEHLQLKT---FEYRDARNYLSY 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNEKQ 133
             +  +   S+ R +S +++F +Y     +T + NI+N    + + KK   LP+   E++
Sbjct: 59  LYSNHLKRTSVSRKISTLRTFYEYW----MTLDENIINPFVQLVHPKKEKYLPQFFYEEE 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L   V   TS      + R+  IL LLY  G+R+SE +++  Q+I    + + + GK
Sbjct: 115 MEALFKTVEEDTSK-----NLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDL------CPFD---LNLNIQLPLFRGIRGKPLNPGVFQ 244
           G K R VP     R++I  Y +       C  D   LN+  +    RG+R   LN  V  
Sbjct: 170 GSKERFVPFGAYCRQSIENYLEHFKPIQSCNHDFLILNMKGEAITERGVR-YVLNDIV-- 226

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
                 +R  G+      H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++
Sbjct: 227 ------KRTAGVS-EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQ 279

Query: 305 NGGDWMMEIYDQTHPSITQKDK 326
                + ++Y   HP   ++++
Sbjct: 280 Q----LRKVYLNAHPRAKKENE 297


>gi|153830656|ref|ZP_01983323.1| tyrosine recombinase XerD [Vibrio cholerae 623-39]
 gi|148873865|gb|EDL72000.1| tyrosine recombinase XerD [Vibrio cholerae 623-39]
          Length = 302

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 156/304 (51%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  +  ERGL++ T+ SY  D  + L ++A   + +  +  I      E ++++S+ 
Sbjct: 13  EQFLDTMWFERGLAENTVVSYRNDLSKLLEWMA---QNQYRLDFISFAGLQEYQSWLSE- 68

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R LS I+   +YL + K+  +     + + K    LP+ L+E Q     
Sbjct: 69  --QNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQV---- 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL        ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG K R
Sbjct: 123 -EALLSAPDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKER 181

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VP+  +  + I E +      L L  Q    +F   RG+ +    F   I+      G+
Sbjct: 182 LVPMGENAIEWI-ETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGI 240

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            +   + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + ++++
Sbjct: 241 DVEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHN 296

Query: 316 QTHP 319
           + HP
Sbjct: 297 EHHP 300


>gi|197123191|ref|YP_002135142.1| tyrosine recombinase XerC [Anaeromyxobacter sp. K]
 gi|196173040|gb|ACG74013.1| tyrosine recombinase XerC [Anaeromyxobacter sp. K]
          Length = 343

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 144/313 (46%), Gaps = 23/313 (7%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E+ +E + +   L  E+  S  T ++Y+ D  Q+  +LA         Q +   S   +R
Sbjct: 11  EVPEEIRRFDAYLASEKRASPHTRKAYQVDLAQYAAYLADQG------QPLVPSSPALVR 64

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F++ R+    G  SL R LS ++S  ++L +  +   +    + + K+   LP  L E+
Sbjct: 65  GFLA-RQAGAAGAVSLGRKLSALRSLYRFLVREGLAPGNPARAVASPKRPKRLPEVLPEE 123

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   LV+     T      +  R+ A L LLYG GLR+SE   L  +++      +R+ G
Sbjct: 124 EVAALVETPDAATEAP---LALRDRAFLELLYGSGLRVSELTGLDLEDLDLAGGLVRVLG 180

Query: 193 KGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           K +K RIVP      +A+  Y D     L     +      +F   RG  L      R +
Sbjct: 181 KRNKERIVPFGAPAAEALRRYLDGARPVLATGPDHARAGDAVFLNFRGGRLTSRSVARRL 240

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                  GLP     H LRH FATHLL NG DLR IQ +LGH  LSTTQ YT++      
Sbjct: 241 DGWVLASGLPRHVHPHVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTHL------ 294

Query: 308 DW--MMEIYDQTH 318
           DW  +  +YD  H
Sbjct: 295 DWKRLAAVYDAAH 307


>gi|148260468|ref|YP_001234595.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|146402149|gb|ABQ30676.1| phage integrase family protein [Acidiphilium cryptum JF-5]
          Length = 304

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 156/315 (49%), Gaps = 26/315 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+++  ERG ++ T+ +Y+ D   F  F A             +     +  ++   
Sbjct: 8   EAFLESMVAERGAARNTILAYQADLADFAAFCASRGHGPA------EADAASVADYLGGL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            T  +  R+  R LS ++ F ++L +     +       + K + +LP+ ++E +    V
Sbjct: 62  ATAGLSARTQARRLSSLRQFQRFLLRDGQRADDPTALTSSPKLARTLPKTISEAE----V 117

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D +L   +           A L +LY  G+RISE L L    +  D S L I+GKG + R
Sbjct: 118 DALLTAAAAMPGQAGRVAEAGLEILYATGMRISELLVLPANALSTDASALLIKGKGGRER 177

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIR-GKPLNPGVFQRYIRQLRRYL 254
           IVPL  + R A     ++       N + P   LF G R G P+    F R ++++    
Sbjct: 178 IVPLSAAARDAAARLREM-------NRKRPSRHLFPGRRMGFPMTRQAFARQLKRVAVMA 230

Query: 255 GL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           G+ P   + H+LRH+FATHLL+ G DLRS+Q++LGH  +STTQIYT+V +    + + ++
Sbjct: 231 GIHPARLSPHSLRHAFATHLLARGADLRSLQTLLGHADISTTQIYTHVLA----ERLQKL 286

Query: 314 YDQTHPSITQKDKKN 328
            ++ HP  T+  ++ 
Sbjct: 287 VEEHHPLATRPGRRK 301


>gi|120602477|ref|YP_966877.1| tyrosine recombinase XerD [Desulfovibrio vulgaris DP4]
 gi|120562706|gb|ABM28450.1| tyrosine recombinase XerD subunit [Desulfovibrio vulgaris DP4]
 gi|311233936|gb|ADP86790.1| tyrosine recombinase XerD [Desulfovibrio vulgaris RCH1]
          Length = 321

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 150/302 (49%), Gaps = 22/302 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL++L +ERGL++ TL +Y  D    LI L  + EE+  +  + ++    +   +   R 
Sbjct: 31  WLEHLLVERGLAENTLAAYSAD----LIELQVFLEERGCL--LAEVDEQTLFMHVVDLRR 84

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  R+L R L+ ++ F  +            L + N K + +LP  L   +  T++  
Sbjct: 85  RGMAGRTLARHLATLRGFFAFAVGEGELEADPALFLENPKLARNLPDVLTRDEMATILAR 144

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L     +  +  R+  +L L+Y  GLR+SE  +L P +       +R+ GKG K RIV
Sbjct: 145 PDL-----SDRLGFRDRTMLELMYAAGLRVSELCALRPLDFDAQAGVVRVFGKGAKERIV 199

Query: 201 PLLPSVRKAILEYY--DLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           P+   V  A++  Y  D  P F     ++  +F    GK L+     + +++     G+ 
Sbjct: 200 PVH-HVSCALVTAYLRDWRPAFS---PVEPAMFLNRSGKGLSRQAVWKVVKRHVAEAGIH 255

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + HT RHSFATHLL  G DLRS+Q +LGH  +S T+IYT+V +    D +  I++  
Sbjct: 256 KDISPHTFRHSFATHLLEGGADLRSVQLLLGHADISATEIYTHVQA----DRLRRIHNAH 311

Query: 318 HP 319
           HP
Sbjct: 312 HP 313


>gi|15603566|ref|NP_246640.1| site-specific tyrosine recombinase XerC [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|34223005|sp|Q9CKC2|XERC_PASMU RecName: Full=Tyrosine recombinase xerC
 gi|12722110|gb|AAK03785.1| XerC [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 295

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/304 (32%), Positives = 151/304 (49%), Gaps = 25/304 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L IER +S  TL +Y+   RQ    +    E  IT  + + ++ + +R  +++     + 
Sbjct: 12  LRIERQVSPHTLTNYQ---RQLYRIVDILAENGIT--SWQAVTPSIVRFILAQSNKDGLK 66

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           +RSL   LS ++ F  YL +++    +    +   K++  LP+ ++ +Q   L++N    
Sbjct: 67  ERSLALRLSVLRRFFTYLVQQQDINVNPATGVSAPKQNRHLPKNIDAEQVQQLLNN---- 122

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            S E   ID R+ AIL LLY  GLR+SE  SL   +I      +R+ GKG+K RIVP   
Sbjct: 123 DSKEP--IDIRDRAILELLYSSGLRLSELQSLNLNSINTRVREVRVMGKGNKERIVPFGR 180

Query: 205 SVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
               AI ++  +     P D        LF    G  L     Q+ +       GL    
Sbjct: 181 YASHAIQQWLKVRILFNPKDE------ALFVSQLGNRLTHRAIQQRLEVWGIKQGLSSHL 234

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
             H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    + E+YD  HP 
Sbjct: 235 NPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEVYDSAHPR 290

Query: 321 ITQK 324
             +K
Sbjct: 291 AKRK 294


>gi|145638777|ref|ZP_01794386.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittII]
 gi|148827463|ref|YP_001292216.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittGG]
 gi|145272372|gb|EDK12280.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittII]
 gi|148718705|gb|ABQ99832.1| tyrosine recombinase [Haemophilus influenzae PittGG]
 gi|309750267|gb|ADO80251.1| Site-specific, tyrosine recombinase XerD [Haemophilus influenzae
           R2866]
          Length = 297

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/295 (30%), Positives = 151/295 (51%), Gaps = 17/295 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           IE+GLS+ T+QSY  D      +L    +  ++++T   L    ++ F+ +R  +     
Sbjct: 16  IEKGLSENTVQSYRLDLTALCDWL---DKNDLSLET---LDAVHLQGFLGERLEKGYKAT 69

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R LS I+   +YL + K   +     + + K  + LP+ L E+Q      + LL+T 
Sbjct: 70  STARMLSAIRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQV-----SDLLNTP 124

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG+K RIVP+    
Sbjct: 125 DVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184

Query: 207 RKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHT 264
              + ++     P  LN      +F   R + +    F   ++       +     + H 
Sbjct: 185 AYWVRQFMLYGRPVLLNGQSSDVVFPSQRTQQMTRQTFWHRVKHYAILADIDADALSPHV 244

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++++ HP
Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER----LKRLHERFHP 295


>gi|212702793|ref|ZP_03310921.1| hypothetical protein DESPIG_00823 [Desulfovibrio piger ATCC 29098]
 gi|212673655|gb|EEB34138.1| hypothetical protein DESPIG_00823 [Desulfovibrio piger ATCC 29098]
          Length = 312

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/323 (30%), Positives = 161/323 (49%), Gaps = 22/323 (6%)

Query: 2   EGNNLPEIV--SFELLKER-QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI 58
           E + LPE    S ++LK++   W + L  +RGLS  T+ SY  D   F +FL     +++
Sbjct: 3   EKSVLPEATERSLQILKKQIPAWGEYLLAQRGLSMRTVVSYRQDLENFFLFL-----DEL 57

Query: 59  TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL--NM 116
                  L   ++  +++  R +K   R+L R LS ++ F +Y      T E  +L  N 
Sbjct: 58  DAGDKTSLDEHDLFLYLAWLRARKNAGRTLARRLSALRGFFEY------TVEEGLLESNP 111

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
            +L +S  LP+ L E  +   +D +L       K    R+  +L +LY  GLR+SE  +L
Sbjct: 112 ASLLESPRLPQYLPEVLSKAEMDRLLQLPDMREK-CGRRDRCLLEMLYAAGLRVSEVCNL 170

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
              ++   +  + + GKG K R+VPL   V   + ++      D +   +  LF    GK
Sbjct: 171 LVADVDMQRGLVLVSGKGAKDRLVPLHSLVLDLLQQWLSFWRDDFSPQSRY-LFLNRSGK 229

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L+     + +++     G+  S + HT RHSFATHLL  G DLR++Q +LGH  +S T+
Sbjct: 230 GLSRQYVWKMVKKYALLAGIRRSISPHTFRHSFATHLLEGGADLRAVQLLLGHADISATE 289

Query: 297 IYTNVNSKNGGDWMMEIYDQTHP 319
           IYT+V ++     +  ++ Q HP
Sbjct: 290 IYTHVQAER----LHALHRQFHP 308


>gi|258541884|ref|YP_003187317.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-01]
 gi|256632962|dbj|BAH98937.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-01]
 gi|256636019|dbj|BAI01988.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-03]
 gi|256639074|dbj|BAI05036.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-07]
 gi|256642128|dbj|BAI08083.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-22]
 gi|256645183|dbj|BAI11131.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-26]
 gi|256648238|dbj|BAI14179.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-32]
 gi|256651291|dbj|BAI17225.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654282|dbj|BAI20209.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-12]
          Length = 306

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/290 (33%), Positives = 150/290 (51%), Gaps = 18/290 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE-IRAFISKRR 79
           +L+ L  ER  +  TL +YE D       LA    E  T+QT    + TE ++ +++   
Sbjct: 9   FLEMLAAERAAAPNTLAAYEADLTSCAESLA---REGQTLQT----ATTEGLQNWMAALV 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                 R++ R LS I+ F  +L +  +  ++   ++ + K    LPR L+E + L L++
Sbjct: 62  GSGQARRTVARRLSCIRQFYLFLLREGMRADNPAAHLDSPKPHTPLPRFLSESEVLALLN 121

Query: 140 NVL--LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                   S   K       A L LLY  GLRISE L+L  + I  DQ  + ++GKG + 
Sbjct: 122 ACAEPAGASLAKKRRGILAKAALELLYASGLRISELLALPRKAIAGDQRMIMVRGKGGRE 181

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRG-IRGKPLNPGVFQRYIRQLR-RYL 254
           R+VPL  S R+A          +++ +++ P LF G    KP+    F R +  +  R  
Sbjct: 182 RLVPLSDSAREAAQAL-----LEVDAHLESPFLFPGRDPAKPMTRQAFDRILHTVAIRAE 236

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             P   + H LRHSFATHLL++G DLR++Q +LGH  ++TTQIYT+V ++
Sbjct: 237 IDPARLSPHVLRHSFATHLLAHGADLRALQMLLGHADIATTQIYTHVQTE 286


>gi|255320980|ref|ZP_05362153.1| tyrosine recombinase XerD [Acinetobacter radioresistens SK82]
 gi|262379931|ref|ZP_06073086.1| tyrosine recombinase XerD [Acinetobacter radioresistens SH164]
 gi|255301944|gb|EET81188.1| tyrosine recombinase XerD [Acinetobacter radioresistens SK82]
 gi|262298125|gb|EEY86039.1| tyrosine recombinase XerD [Acinetobacter radioresistens SH164]
          Length = 306

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/239 (34%), Positives = 131/239 (54%), Gaps = 9/239 (3%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q    RS+ R+LS ++SF K+++++++ +++ +   +  K   +LP+ L+E     L   
Sbjct: 75  QGKSPRSIARTLSALRSFFKFMREQQLRSDNPVATHKTPKLGRALPKDLSE-----LDVE 129

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LLH       +  R+ A+L +LY CGLR++E L+L  + I   Q  LRI GKG+K R+V
Sbjct: 130 HLLHAPDINTALGLRDRAMLEVLYACGLRVTELLNLRLELINLKQGYLRITGKGNKERLV 189

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           PL     + + +Y +     L  +    LF    G  ++   F   I++     G+    
Sbjct: 190 PLGQVAIEWVEKYLNEARPQLYKSATDYLFLTQHGGIMSRQNFWYAIKRYALQAGIQAEL 249

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        M +++   HP
Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQIR----MQQLHAAHHP 304


>gi|163755827|ref|ZP_02162945.1| integrase, site-specific recombinase [Kordia algicida OT-1]
 gi|161324348|gb|EDP95679.1| integrase, site-specific recombinase [Kordia algicida OT-1]
          Length = 295

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 151/299 (50%), Gaps = 13/299 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + + L++E+  S+ T+ +YE D R F  F     E+     +I  + Y +IR +I     
Sbjct: 6   FTEYLKLEKNYSEHTVTAYEKDLRSFAEFCKKEYED----DSIINVHYVQIRNWIVSLVE 61

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + + + ++ R +S +K++ KYL K K    S +   + LK +  +    ++K+    +D 
Sbjct: 62  KGLQNATINRKISSLKTYYKYLLKTKQIEASPLAKHKALKTAKKVQVPFSQKE----MDI 117

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           VL     +  +   RN  I+ + Y  G+R SE ++L   +I     T+RI GK +K RIV
Sbjct: 118 VLNAVEFKNDFEGVRNKTIIEMFYATGMRRSELINLKQSDIDYTAKTIRILGKRNKERIV 177

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           PLL  + +A L+ Y L    ++   +  LF   +G  +   +  R I          +  
Sbjct: 178 PLLQKL-EAQLKEYILHRKQIDNQKKEELFLTAKGNKIYSNLVYRLINDYFSIASTKVKK 236

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           + H LRH+FATHLL+ G DL +++ +LGH  L++TQ+YT+    N    +  +Y + HP
Sbjct: 237 SPHMLRHTFATHLLNQGADLNAVKELLGHASLASTQVYTH----NSLAELKNVYAKAHP 291


>gi|256821403|ref|YP_003145366.1| tyrosine recombinase XerC [Kangiella koreensis DSM 16069]
 gi|256794942|gb|ACV25598.1| tyrosine recombinase XerC [Kangiella koreensis DSM 16069]
          Length = 299

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 158/309 (51%), Gaps = 20/309 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L  L  E+  S+ T+ +Y    RQ    LAF  +   +    +Q++  +IR  I+KR
Sbjct: 6   QRYLNRLLHEKRYSEHTVNNYR---RQLERLLAFCHDAGYS--NWQQITTQDIRMLIAKR 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S    LS ++ FL++L   K  T +  + +R  KK+  LP+ ++       V
Sbjct: 61  HRQGASPSSSALQLSAMRRFLEFLLSEKKITVNPAVGVRGPKKAKRLPKNID-------V 113

Query: 139 D--NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           D  N  L    E + I+ R+ A++ LLY  G+R++E  ++   ++     +LR+ GKG+K
Sbjct: 114 DSLNHFLDQMPEDEPIEVRDKAMMELLYSSGIRLAELSAMDIDDLSFSDQSLRVLGKGNK 173

Query: 197 IRIVPLLPSVRKAI-LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           +R VP   S +K + L   +   F  N + +  LF   +G  L     Q+ +    + LG
Sbjct: 174 VREVPFGNSSKKVLSLWLKERNNFAKNSD-EKALFLSQQGNRLTNRAIQQRLAHWGKKLG 232

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L      H LRHS ATH+L +  DLR++Q +LGH  +STTQIYT+++ ++    + + YD
Sbjct: 233 LNDRLHPHKLRHSCATHVLESSSDLRAVQELLGHASISTTQIYTHLDFQH----LAKTYD 288

Query: 316 QTHPSITQK 324
             HP   +K
Sbjct: 289 AAHPRARKK 297


>gi|153004979|ref|YP_001379304.1| tyrosine recombinase XerD [Anaeromyxobacter sp. Fw109-5]
 gi|152028552|gb|ABS26320.1| tyrosine recombinase XerD [Anaeromyxobacter sp. Fw109-5]
          Length = 298

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 151/300 (50%), Gaps = 15/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++ ++ +E+GL++ +++ Y  D R+++  L     + + I    ++   EI+A + +   
Sbjct: 11  FVAHVRVEKGLAENSVEGYLRDLRRYVEHL-----DALGIGAWERVGRIEIQAHLGELVR 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  RS  R+LS I+S  + L   K+T       +   +    LP  L+  +   L   
Sbjct: 66  RGLSPRSQARALSAIRSLHRLLFAEKLTPVDAGDELDAPRPGRKLPELLSHDEIARL--- 122

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L +         R+ A+L LLY  GLR+SE +SL   ++  +   L  +GKG+K RIV
Sbjct: 123 --LASPDPRSAAGLRDRAMLELLYATGLRVSELVSLGLNDVNLETRVLVARGKGNKERIV 180

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+     +A+  Y  +    L        LF   RG  L    F + + +  R  G+   
Sbjct: 181 PVGAPAAEAVKAYLAVGRERLLRGRRSKDLFVSPRGGRLTRQGFAKLLGRHARAAGIRRR 240

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + H LRHSFATHLL  G DLR++Q++LGH  +STTQIYT+V+  +    +  +YD+ HP
Sbjct: 241 ISPHKLRHSFATHLLEGGADLRAVQAMLGHADVSTTQIYTHVDRSH----VRRLYDRFHP 296


>gi|315607090|ref|ZP_07882094.1| integrase/recombinase XerD [Prevotella buccae ATCC 33574]
 gi|315251144|gb|EFU31129.1| integrase/recombinase XerD [Prevotella buccae ATCC 33574]
          Length = 313

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 158/302 (52%), Gaps = 16/302 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L++ER  S+ T+++Y  D    + FL    +E+       +LS  ++  F +  
Sbjct: 22  KAYLRYLKLERNYSENTVEAYRHDLGYLMAFL----KERGLAAVDAELS--DMEEFAATL 75

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +  RS  R LSG++SF ++L+            + + +    LP  L+ ++   L 
Sbjct: 76  HEKNVSARSQSRILSGVRSFYRFLRLDGYMETDPTELLGSPQTGEHLPEYLSTEEVDLLE 135

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            ++ L     +KW   RN AI+ +L+ CGLR+SE ++L   ++  ++  +R+ GKG+K R
Sbjct: 136 GSIDL-----SKWEGQRNKAIIEVLFSCGLRVSELVNLKFSDLFPEEKFVRVIGKGNKER 190

Query: 199 IVPLLPS-VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+  S +R+  L Y D     +    +  +F   RG  L   +    I++     G+ 
Sbjct: 191 LVPISSSALRQLELWYMDRNLMTIKPGEEDYVFLNRRGHHLTRTMILIMIKRQAVAAGIK 250

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT++YT++ +    D   EI +  
Sbjct: 251 KTISPHTLRHSFATALLKGGADLRAIQAMLGHESIGTTEVYTHLET---SDLRREILEH- 306

Query: 318 HP 319
           HP
Sbjct: 307 HP 308


>gi|153939513|ref|YP_001391125.1| tyrosine recombinase XerD [Clostridium botulinum F str. Langeland]
 gi|170757059|ref|YP_001781413.1| tyrosine recombinase XerD [Clostridium botulinum B1 str. Okra]
 gi|152935409|gb|ABS40907.1| tyrosine recombinase XerD [Clostridium botulinum F str. Langeland]
 gi|169122271|gb|ACA46107.1| tyrosine recombinase XerD [Clostridium botulinum B1 str. Okra]
 gi|295319169|gb|ADF99546.1| tyrosine recombinase XerD [Clostridium botulinum F str. 230613]
          Length = 291

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 162/301 (53%), Gaps = 17/301 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N++++L+ ++ LSK TL++Y  D  +F  F+    E+ +++ T+       I AF+   
Sbjct: 6   ENYIKDLQ-KKNLSKNTLEAYRRDVEKFSEFVRNREEKILSVDTV------TIMAFVQYL 58

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + +     S+ R++  I++F KYL K+ + +E   L     K   ++P+ L+ ++    V
Sbjct: 59  QREGRATSSIVRNIVSIRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILSVEE----V 114

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D +L   +   K +  R+ A+L L+Y  G++I+E L+L   +I    + ++ +G   + R
Sbjct: 115 DKLLNSPNSSKKGL--RDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRER 172

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           I+P+     K +  Y ++ P     N+   LF  ++G  +    F + I+   +   +  
Sbjct: 173 IIPIGSYAIKCLKNYLEVRPAINVYNLDY-LFLNLKGTQMTRQGFWKIIKFYAKEASIDK 231

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
              ++TLRHSFA HLL NG D++S+Q +LGH  L+ TQIY++++ K+    + E+Y   H
Sbjct: 232 EIDSYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSK---IAEVYKNAH 288

Query: 319 P 319
           P
Sbjct: 289 P 289


>gi|126434558|ref|YP_001070249.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. JLS]
 gi|166918889|sp|A3PXY1|XERC_MYCSJ RecName: Full=Tyrosine recombinase xerC
 gi|126234358|gb|ABN97758.1| tyrosine recombinase XerC subunit [Mycobacterium sp. JLS]
          Length = 300

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 138/298 (46%), Gaps = 10/298 (3%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           Q L +ERG S  T ++Y  D R    F+    +E+     +  L+   +RA++S +    
Sbjct: 10  QYLALERGRSDHTRRAYLGDLRSLFAFV----DERTPGADLGSLTLPVLRAWLSAQAAAG 65

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
               +L R  S +K+F  +  +R +        ++  K   +LP  L + QA   +D   
Sbjct: 66  TARTTLARRTSAVKTFTAWAVRRGLMASDPATRLQMPKARRTLPAVLRQDQARDALDAAN 125

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
              + +   +  R+  I+ +LY  G+R+SE   L   ++   +  LR+ GKGDK R VP 
Sbjct: 126 -SGAQQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTSRRLLRVLGKGDKQRTVPF 184

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
                +A+  +       L      P L  G RG+ L+P   +  + +    +       
Sbjct: 185 GEPAEQALRAWLTSGRPALATAESGPALLLGARGRRLDPRQARTVVHETVGAVAGAPDIG 244

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V        +  ++DQ HP
Sbjct: 245 PHGLRHSAATHLLEGGADLRIVQELLGHSTLATTQLYTHVTVAR----LRAVHDQAHP 298


>gi|95929339|ref|ZP_01312082.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
 gi|95134455|gb|EAT16111.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
          Length = 297

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/311 (30%), Positives = 157/311 (50%), Gaps = 22/311 (7%)

Query: 20  NWLQN----LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            WL      L +ER L+  T  +Y  D + F  F+     E++    +  +    +R ++
Sbjct: 3   TWLDEFSRYLSVERNLASHTQTAYLRDVQAFCDFICGEHREQLKT-LLPAVEKHTLRRWM 61

Query: 76  SK--RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++  +  +K+   ++ R ++ I+SF  +L+++     +  L +R  +    LP  L+   
Sbjct: 62  AQLLKNNKKV---TVARKVASIRSFYSFLQRQGHVEHNPALQVRLPRVERYLPTTLDVDY 118

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D        ++     R+ A   LLY  GLR+ E ++L   ++  DQ+ +R+ GK
Sbjct: 119 MYHLLD-----APGDSTLQSLRDRAAFELLYSSGLRVGELVALNVADLDFDQALVRVLGK 173

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K RIVP+     +A++ Y +            PL    +G  L+    QR +++    
Sbjct: 174 GGKQRIVPVGSKALQALMAYLERRGVT---ERDEPLLVNRQGTRLSARTVQRNLKKKLLQ 230

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           LGLP + T H+LRHSFATHLL  G DLR+IQ +LGH  LSTTQ YT V++    D MM+ 
Sbjct: 231 LGLPTTATPHSLRHSFATHLLDEGADLRAIQEMLGHQSLSTTQKYTQVST----DRMMKE 286

Query: 314 YDQTHPSITQK 324
           YD+ HP   +K
Sbjct: 287 YDRAHPRSRKK 297


>gi|210633132|ref|ZP_03297699.1| hypothetical protein COLSTE_01612 [Collinsella stercoris DSM 13279]
 gi|210159286|gb|EEA90257.1| hypothetical protein COLSTE_01612 [Collinsella stercoris DSM 13279]
          Length = 305

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 144/314 (45%), Gaps = 20/314 (6%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           S  LL    +++ +L    G S  T+++Y      +  + A    + +   T       +
Sbjct: 5   SARLLGLIDDYIAHLSRFEGASSETVRAYTQHLEAYARWAARAGRDGLAPST------RD 58

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +RA++S+ R      R++   LS I+SF ++L    +     +  + + K    LP  L 
Sbjct: 59  VRAYLSELRAAGYAARTVAAHLSSIRSFFRWLSDEGLAGADPVTAIASPKLDRPLPHVLA 118

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             Q   L+D   L ++        R++A+L L    G RISE  +L   ++   ++++R+
Sbjct: 119 PDQLARLMDAPDLASAGGK-----RDAAMLELFIATGARISELAALDLADVDVSRASVRL 173

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            GKG K R+VPL          Y +     L       + +   F   RG+P++    + 
Sbjct: 174 FGKGSKERLVPLYDRACSVCARYLEEGRGELLGRGAASSREASFFISDRGRPMSASSLRH 233

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
               L+R  G+P   T H +RH+FAT LL  G DLRS+Q +LGH  LSTTQIYT++    
Sbjct: 234 RFDALKRRAGIPADITPHAMRHTFATELLIGGADLRSVQELLGHASLSTTQIYTHLTP-- 291

Query: 306 GGDWMMEIYDQTHP 319
             D +     Q HP
Sbjct: 292 --DRLKSAVHQAHP 303


>gi|226949108|ref|YP_002804199.1| tyrosine recombinase XerD [Clostridium botulinum A2 str. Kyoto]
 gi|226843555|gb|ACO86221.1| tyrosine recombinase XerD [Clostridium botulinum A2 str. Kyoto]
          Length = 291

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 161/301 (53%), Gaps = 17/301 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N++++L+ ++ LSK TL++Y  D  +F  F+    E+ +++ T+       I AF+   
Sbjct: 6   ENYIKDLQ-KKNLSKNTLEAYRRDVEKFSEFVRNREEKILSVDTV------TIMAFVQYL 58

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + +     S+ R++  I++F KYL K+ + +E   L     K   ++P+ L+ ++    V
Sbjct: 59  QREGRATSSIVRNIVSIRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILSVEE----V 114

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D +L       K +  R+ A+L L+Y  G++I+E L+L   +I    + ++ +G   + R
Sbjct: 115 DKLLNSPDSSKKGL--RDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRER 172

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           I+P+     K +  Y ++ P     N+   LF  ++G  +    F + I+   +   +  
Sbjct: 173 IIPIGSYAIKCLKNYLEVRPAINVYNLDY-LFLNLKGTQMTRQGFWKIIKFYAKEASIDK 231

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
              ++TLRHSFA HLL NG D++S+Q +LGH  L+ TQIY++++ K+    + E+Y   H
Sbjct: 232 EIDSYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSK---IAEVYKNAH 288

Query: 319 P 319
           P
Sbjct: 289 P 289


>gi|307246735|ref|ZP_07528805.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|307255720|ref|ZP_07537524.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|307260172|ref|ZP_07541882.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|306852435|gb|EFM84670.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|306861397|gb|EFM93387.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|306865818|gb|EFM97696.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
          Length = 336

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 160/305 (52%), Gaps = 19/305 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L IE+  S+ TL +Y+   RQ L      ++  I+  T ++++   +R  I++   Q +G
Sbjct: 49  LRIEKQASQHTLSNYQ---RQLLAVSDMLSQAGIS--TWQEVNSATVRWIIAQSNKQGLG 103

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            +S+   L  ++ +  YL +++  + +  + ++  K S  LP+ ++ +QA    + +L  
Sbjct: 104 AKSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQA----EQLLTS 159

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            SHE    D R+ A++ L+Y  GLR+SE   L   ++      +R+ GKG+K RIVP+  
Sbjct: 160 DSHEPS--DLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGS 217

Query: 205 SVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              +A+  +  +   F    N    +F   RG  L+    Q  +++     GL      H
Sbjct: 218 KALEALNRWLAVRNQFKPQDN---AVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPH 274

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            LRHSFATH+L   GDLR++Q +LGH  L+TTQIYT+++ ++    + +IYD  HP   +
Sbjct: 275 KLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQH----LAKIYDAAHPRAKR 330

Query: 324 KDKKN 328
           K + +
Sbjct: 331 KKQDD 335


>gi|229817386|ref|ZP_04447668.1| hypothetical protein BIFANG_02648 [Bifidobacterium angulatum DSM
           20098]
 gi|229785175|gb|EEP21289.1| hypothetical protein BIFANG_02648 [Bifidobacterium angulatum DSM
           20098]
          Length = 324

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 153/314 (48%), Gaps = 29/314 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++ ++++ERGLSK T+ +Y  D  ++ ++L      +  I     +S   +  +I+   +
Sbjct: 22  FIAHIDVERGLSKATVTAYTSDLDRYCVWL-----REAGITEPASISRNHVEEYIAHLDS 76

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD- 139
                RS  R+L+ I  F ++   +    +     ++  K +++LP  L   +   L+D 
Sbjct: 77  HGASARSKARNLASIHEFHRFALAQHAVADDVSAAVKAPKGASTLPDVLTVDEVARLLDC 136

Query: 140 ------NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                   ++   H    +  R+ A+L  +Y  G R+SEA+     +I  ++   R+ GK
Sbjct: 137 APVPAPGCVMDVPHA---VLMRDKALLEFMYATGCRVSEAVGTDLNDIDLNERVARLLGK 193

Query: 194 GDKIRIVPLLPSVRKAILEYYD--LCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYI 247
           G K R+VP+      A+  Y D      +     + P    +F   RG+ ++       +
Sbjct: 194 GSKQRLVPVGEYACAAMTRYLDEGRSLLEGCAKSKAPERSAVFLNKRGQRMSRQSVWEVV 253

Query: 248 RQL--RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            Q   R ++G PL    HTLRHSFATHL+  G D+R++Q +LGH  ++TTQIYT+V+ +N
Sbjct: 254 NQAGKRAHIGKPLHP--HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPEN 311

Query: 306 GGDWMMEIYDQTHP 319
               ++E Y   HP
Sbjct: 312 ----LIETYLTAHP 321


>gi|288926604|ref|ZP_06420520.1| integrase/recombinase XerD [Prevotella buccae D17]
 gi|288336626|gb|EFC74996.1| integrase/recombinase XerD [Prevotella buccae D17]
          Length = 304

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 153/288 (53%), Gaps = 12/288 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L++ER  S+ T+++Y  D    + FL    +E+       +LS  ++  F +  
Sbjct: 13  KAYLRYLKLERNYSENTVEAYRHDLGYLMAFL----KERGLAAVDAELS--DMEEFAATL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +  RS  R LSG++SF ++L+            + + +    LP  L+ ++   L 
Sbjct: 67  HEKNVSARSQSRILSGVRSFYRFLRLDGYMETDPTELLGSPQTGEHLPEYLSTEEVDLLE 126

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            ++ L     +KW   RN AI+ +L+ CGLR+SE ++L   ++  ++  +R+ GKG+K R
Sbjct: 127 GSIDL-----SKWEGQRNKAIIEVLFSCGLRVSELVNLKFSDLFPEEKFVRVIGKGNKER 181

Query: 199 IVPLLPS-VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+  S +R+  L Y D     +    +  +F   RG  L   +    I++     G+ 
Sbjct: 182 LVPISSSALRQLELWYMDRNLMTIKPGEEDYVFLNRRGHHLTRTMILIMIKRQAVAAGIK 241

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT++YT++ + +
Sbjct: 242 KTISPHTLRHSFATALLKGGADLRAIQAMLGHESIGTTEVYTHLETSD 289


>gi|89890506|ref|ZP_01202016.1| tyrosine recombinase XerD [Flavobacteria bacterium BBFL7]
 gi|89517421|gb|EAS20078.1| tyrosine recombinase XerD [Flavobacteria bacterium BBFL7]
          Length = 298

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 155/303 (51%), Gaps = 16/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L    +ER L+  TL++Y  D  +   +L       I+I    +++   +R +I + 
Sbjct: 8   KDFLTYSRLERSLADNTLKAYSRDLHKLNNWLL---ANDISISPT-EINSNILRDYIYEL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +  RS  R+LS +K F  YL       ++ +  + + K    LP  L+ ++   L+
Sbjct: 64  -AKNVSSRSQARALSSLKVFFNYLILEDYRKDNPLELIESPKIGRKLPDTLSTQEIDALI 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +++   T H       RN AIL  LYGCGLR+SE  +L   ++   +  +++ GKGDK R
Sbjct: 123 NSIDRSTPH-----GERNRAILETLYGCGLRVSELTTLKISDLFFQEGFIKVTGKGDKQR 177

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            +P+     K I  Y +     L +  Q    +F   RG  L   +    I++L+   G+
Sbjct: 178 FIPIGDFTIKVINLYINEIRPHLPIKPQHTDTVFLNRRGAGLTRAMIFHIIKELKVKAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HT RHSFATHLL NG DLRSIQ +LGH  ++TT+IY +V+  +    + ++ ++
Sbjct: 238 TKKISPHTFRHSFATHLLENGADLRSIQMMLGHESITTTEIYMHVDRAH----LTKVMEK 293

Query: 317 THP 319
            HP
Sbjct: 294 HHP 296


>gi|326403661|ref|YP_004283743.1| tyrosine recombinase XerD [Acidiphilium multivorum AIU301]
 gi|325050523|dbj|BAJ80861.1| tyrosine recombinase XerD [Acidiphilium multivorum AIU301]
          Length = 320

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 155/315 (49%), Gaps = 26/315 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+++  ERG ++ T+ +Y+ D   F  F A             +     +  ++   
Sbjct: 24  EAFLESMVAERGAARNTILAYQADLADFAAFCASRGHGPA------EADAASVADYLGGL 77

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            T  +  R+  R LS ++ F ++L +     +       + K + +LP+ ++E +    V
Sbjct: 78  ATAGLSARTQARRLSSLRQFQRFLLRDGQRADDPTALTSSPKLARTLPKTISEAE----V 133

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D +L   +           A L +LY  G+RISE L L    +  D S L I+GKG + R
Sbjct: 134 DALLTAAAAMPGQAGRVAEAGLEILYATGMRISELLVLPANALSTDASALLIKGKGGRER 193

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIR-GKPLNPGVFQRYIRQLRRYL 254
           IVPL  + R A     ++       N + P   LF G R G P+    F R ++++    
Sbjct: 194 IVPLSAAARDAAARLREM-------NRKRPSRHLFPGRRMGFPMTRQAFARQLKRVAVMA 246

Query: 255 GL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           G+ P   + H+LRH+FATHLL+ G DLRS+Q++LGH  +STTQIYT+V +    + + ++
Sbjct: 247 GIHPARVSPHSLRHAFATHLLARGADLRSLQTLLGHADISTTQIYTHVLA----ERLQKL 302

Query: 314 YDQTHPSITQKDKKN 328
            ++ HP  T   ++ 
Sbjct: 303 VEEHHPLATPPGRRK 317


>gi|145628659|ref|ZP_01784459.1| tyrosine recombinase [Haemophilus influenzae 22.1-21]
 gi|144979129|gb|EDJ88815.1| tyrosine recombinase [Haemophilus influenzae 22.1-21]
 gi|309972530|gb|ADO95731.1| Site-specific, tyrosine recombinase XerD [Haemophilus influenzae
           R2846]
          Length = 297

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 152/295 (51%), Gaps = 17/295 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           IE+GLS+ T+QSY  D      +L    +  ++++T   L   +++ F+ +R  +     
Sbjct: 16  IEKGLSENTVQSYRLDLTALCDWL---DKNDLSLET---LDAVDLQGFLGERLEKGYKAT 69

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R LS ++   +YL + K   +     + + K  + LP+ L E+Q      + LL+T 
Sbjct: 70  STARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQV-----SDLLNTP 124

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG+K RIVP+    
Sbjct: 125 DVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184

Query: 207 RKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHT 264
              + ++     P  LN      +F   R + +    F   ++       +     + H 
Sbjct: 185 AYWVRQFMLYGRPVLLNGQSSDVVFPSQRTQQMTRQTFWHRVKHYAILADIDADALSPHV 244

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++++ HP
Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER----LKRLHERFHP 295


>gi|302335678|ref|YP_003800885.1| integrase family protein [Olsenella uli DSM 7084]
 gi|301319518|gb|ADK68005.1| integrase family protein [Olsenella uli DSM 7084]
          Length = 308

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 151/315 (47%), Gaps = 40/315 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L +L + R LS+ T+++Y  D    L   A +T  +  +  +  ++++++RA++ + 
Sbjct: 17  RRFLSDLSVTRNLSENTIRAYGTD----LAAYARWTRRQ-GVDPL-DVTHSQLRAYLGEL 70

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
              +   R+L R LS I++  ++L +   T +     + + K + +LP+ + +     L 
Sbjct: 71  VRARYSSRTLNRRLSAIRTLYRWLVREGYTNKDAAAAIASPKVARTLPKTMTDPDVCQL- 129

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
               L    E   I  R+ A++ LLY  G RISE   L   +I  ++  + + GKG K R
Sbjct: 130 ----LGACDEDGVIGLRDRALIELLYASGARISEISRLDVGDIDRERRQVTLLGKGGKER 185

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNL--------------NIQLPLFRGIRGKPLNPGVFQ 244
           IVPL           YD+C  +L+                    LF   RG+ ++    +
Sbjct: 186 IVPL-----------YDMCIDELDAYLLTARPALVVRGEGASEALFVSTRGRRMSAAALR 234

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
               +  R  GL    T H +RH++AT LLS G DLRS+Q +LGH  LSTTQIYT+++  
Sbjct: 235 EAFERRVRLAGLDADITPHAMRHTYATELLSGGADLRSVQELLGHSSLSTTQIYTHLSV- 293

Query: 305 NGGDWMMEIYDQTHP 319
              D +     Q HP
Sbjct: 294 ---DRLKAAARQAHP 305


>gi|22127152|ref|NP_670575.1| site-specific tyrosine recombinase XerD [Yersinia pestis KIM 10]
 gi|45443323|ref|NP_994862.1| site-specific tyrosine recombinase XerD [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51597478|ref|YP_071669.1| site-specific tyrosine recombinase XerD [Yersinia
           pseudotuberculosis IP 32953]
 gi|108806374|ref|YP_650290.1| site-specific tyrosine recombinase XerD [Yersinia pestis Antiqua]
 gi|108813251|ref|YP_649018.1| site-specific tyrosine recombinase XerD [Yersinia pestis Nepal516]
 gi|145597930|ref|YP_001162006.1| site-specific tyrosine recombinase XerD [Yersinia pestis Pestoides
           F]
 gi|150260097|ref|ZP_01916825.1| integrase/recombinase [Yersinia pestis CA88-4125]
 gi|153948372|ref|YP_001399863.1| site-specific tyrosine recombinase XerD [Yersinia
           pseudotuberculosis IP 31758]
 gi|162418404|ref|YP_001608154.1| site-specific tyrosine recombinase XerD [Yersinia pestis Angola]
 gi|165924857|ref|ZP_02220689.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165937373|ref|ZP_02225937.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166010314|ref|ZP_02231212.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166212682|ref|ZP_02238717.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167399752|ref|ZP_02305270.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167418760|ref|ZP_02310513.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167425367|ref|ZP_02317120.1| tyrosine recombinase XerD [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|170023169|ref|YP_001719674.1| site-specific tyrosine recombinase XerD [Yersinia
           pseudotuberculosis YPIII]
 gi|186896598|ref|YP_001873710.1| site-specific tyrosine recombinase XerD [Yersinia
           pseudotuberculosis PB1/+]
 gi|218928065|ref|YP_002345940.1| site-specific tyrosine recombinase XerD [Yersinia pestis CO92]
 gi|229837578|ref|ZP_04457740.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A]
 gi|229840801|ref|ZP_04460960.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842640|ref|ZP_04462795.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229903707|ref|ZP_04518820.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516]
 gi|270487486|ref|ZP_06204560.1| tyrosine recombinase XerD [Yersinia pestis KIM D27]
 gi|294502941|ref|YP_003567003.1| tyrosine recombinase [Yersinia pestis Z176003]
 gi|34222946|sp|Q8ZHK1|XERD_YERPE RecName: Full=Tyrosine recombinase xerD
 gi|21960213|gb|AAM86826.1|AE013928_11 site-specific recombinase [Yersinia pestis KIM 10]
 gi|45438192|gb|AAS63739.1| integrase/recombinase [Yersinia pestis biovar Microtus str. 91001]
 gi|51590760|emb|CAH22405.1| Probable site-specific integrase/recombinase [Yersinia
           pseudotuberculosis IP 32953]
 gi|108776899|gb|ABG19418.1| tyrosine recombinase XerD subunit [Yersinia pestis Nepal516]
 gi|108778287|gb|ABG12345.1| tyrosine recombinase XerD subunit [Yersinia pestis Antiqua]
 gi|115346676|emb|CAL19559.1| integrase/recombinase [Yersinia pestis CO92]
 gi|145209626|gb|ABP39033.1| tyrosine recombinase XerD subunit [Yersinia pestis Pestoides F]
 gi|149289505|gb|EDM39582.1| integrase/recombinase [Yersinia pestis CA88-4125]
 gi|152959867|gb|ABS47328.1| tyrosine recombinase XerD [Yersinia pseudotuberculosis IP 31758]
 gi|162351219|gb|ABX85167.1| tyrosine recombinase XerD [Yersinia pestis Angola]
 gi|165914847|gb|EDR33460.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165923057|gb|EDR40208.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165990800|gb|EDR43101.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166205974|gb|EDR50454.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962754|gb|EDR58775.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050460|gb|EDR61868.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055767|gb|EDR65551.1| tyrosine recombinase XerD [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169749703|gb|ACA67221.1| tyrosine recombinase XerD [Yersinia pseudotuberculosis YPIII]
 gi|186699624|gb|ACC90253.1| tyrosine recombinase XerD [Yersinia pseudotuberculosis PB1/+]
 gi|229679477|gb|EEO75580.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516]
 gi|229690950|gb|EEO83004.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697167|gb|EEO87214.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229704266|gb|EEO91277.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A]
 gi|262360976|gb|ACY57697.1| tyrosine recombinase [Yersinia pestis D106004]
 gi|262364916|gb|ACY61473.1| tyrosine recombinase [Yersinia pestis D182038]
 gi|270335990|gb|EFA46767.1| tyrosine recombinase XerD [Yersinia pestis KIM D27]
 gi|294353400|gb|ADE63741.1| tyrosine recombinase [Yersinia pestis Z176003]
 gi|320014032|gb|ADV97603.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 299

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 156/303 (51%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER L++ TL SY  D    + +L  +  + +      + S  ++++F+++R
Sbjct: 10  EQFLDALWLERNLAENTLASYRLDLHALVGWLTHHNSDLL------RASPQDLQSFLAER 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q     
Sbjct: 64  IEGGYKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQV---- 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            + LL++ +    ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K R
Sbjct: 120 -DALLNSPNVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKER 178

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       I  Y +   P+ +N      LF   R + +    F   I+      G+ 
Sbjct: 179 LVPLGEEAVYWIENYMEHGRPWLVNGASLDVLFPSNRSQQMTRQTFWHRIKHYAILAGID 238

Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q
Sbjct: 239 SERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQ 294

Query: 317 THP 319
            HP
Sbjct: 295 HHP 297


>gi|325299547|ref|YP_004259464.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170]
 gi|324319100|gb|ADY36991.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170]
          Length = 316

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 145/283 (51%), Gaps = 12/283 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + Q L++ER LS  T+ +Y  D  + L   A+ T E I I  +   +  ++  F +    
Sbjct: 24  YRQYLKLERSLSGNTIDAYLTDLDKLL---AYLTLEGIGITDV---TLQDLENFSAGLHD 77

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             I  RS  R LSGI+SF ++L       +     + + +    LP  L  ++   L+  
Sbjct: 78  IGIHPRSQARILSGIRSFFRFLTLDDYIRQDPSELLESPQIGKHLPDVLTVEEIDALIGA 137

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +      ET     RN AIL  LY CGLR+SE  +L   ++  D+  ++++GKG K R+V
Sbjct: 138 I-----DETTPEGQRNRAILETLYSCGLRVSELCNLKLSDLYLDEGFIKVEGKGSKQRLV 192

Query: 201 PLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+ P     +  Y+    +  +    +  +F    GK ++  +    I++L   +GL  +
Sbjct: 193 PISPRAVNELKNYFTERGYAKIKPGYEDFVFISRFGKNISRIMVFHIIKELAERIGLKKT 252

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            + HT RHSFATHLL  G +LR+IQ++LGH  + TT+IYT+++
Sbjct: 253 ISPHTFRHSFATHLLEGGANLRAIQAMLGHESIGTTEIYTHID 295


>gi|284923919|emb|CBG37018.1| tyrosine recombinase [Escherichia coli 042]
 gi|320176053|gb|EFW51122.1| Tyrosine recombinase XerC [Shigella dysenteriae CDC 74-1112]
          Length = 298

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 155/307 (50%), Gaps = 17/307 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+   RQ    + F +E    +Q+ +Q   T +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--GLQSWQQCDVTMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  SFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHP 319
           +YD  HP
Sbjct: 286 VYDAAHP 292


>gi|145640252|ref|ZP_01795836.1| tyrosine recombinase [Haemophilus influenzae R3021]
 gi|145274838|gb|EDK14700.1| tyrosine recombinase [Haemophilus influenzae 22.4-21]
          Length = 297

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 152/295 (51%), Gaps = 17/295 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           IE+GLS+ T+QSY  D      +L    +  ++++T   L   +++ F+ +R  +     
Sbjct: 16  IEKGLSENTVQSYRLDLTALCDWL---DKNDLSLET---LDSVDLQGFLGERLEKGYKAT 69

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R LS ++   +YL + K   +     + + K  + LP+ L E+Q      + LL+T 
Sbjct: 70  STARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQV-----SDLLNTP 124

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG+K RIVP+    
Sbjct: 125 DVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184

Query: 207 RKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHT 264
              + ++     P  LN      +F   R + +    F   ++       +     + H 
Sbjct: 185 AYWVRQFMLYGRPVLLNGQSSDVVFPSQRTQQMTRQTFWHRVKHYAILADIDADALSPHV 244

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++++ HP
Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER----LKRLHERFHP 295


>gi|110680280|ref|YP_683287.1| tyrosine recombinase XerD [Roseobacter denitrificans OCh 114]
 gi|109456396|gb|ABG32601.1| tyrosine recombinase XerD [Roseobacter denitrificans OCh 114]
          Length = 323

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 144/290 (49%), Gaps = 18/290 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+    E G ++ TL +Y  D + F  +L   T +  T       +  ++ A++     
Sbjct: 11  FLEAQAAELGAARNTLLAYGRDLKDFEGYLHHRTLDFATA------TQGDVEAYLIACDA 64

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q +   +  R LS +K   ++  +    +++  L +    +   LP+ L+E +   L++ 
Sbjct: 65  QGLSKATRARRLSAVKQLYRFAFEEGWRSDNPALQITGPGRDRKLPKTLSEAEVDRLLEA 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
               TS       ARN+ ++ LLY  G+R+SE +SL       D   L I+GKG K R+V
Sbjct: 125 A--RTSGRNAADRARNTCLMELLYATGMRVSELVSLPVSAARGDPRMLLIRGKGGKERMV 182

Query: 201 PLLPSVRKAILEYY---DLCPFDLNLNIQLP---LF--RGIRGKPLNPGVFQRYIRQLRR 252
           PL P  R A  E+    D            P   LF  RG+ G  L    F   I++L  
Sbjct: 183 PLSPPARDATSEWLQLRDEKEAQKKTEGHPPSRFLFASRGVSGH-LTRHRFYLLIKELAV 241

Query: 253 YLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             G+ P   T HTLRH+FATHLL+NG DLRSIQ++LGH  ++TT+IYT+V
Sbjct: 242 NAGVSPSKVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHV 291


>gi|91226786|ref|ZP_01261439.1| tyrosine recombinase [Vibrio alginolyticus 12G01]
 gi|269964519|ref|ZP_06178759.1| tyrosine recombinase [Vibrio alginolyticus 40B]
 gi|91188917|gb|EAS75201.1| tyrosine recombinase [Vibrio alginolyticus 12G01]
 gi|269830756|gb|EEZ84975.1| tyrosine recombinase [Vibrio alginolyticus 40B]
          Length = 305

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 154/305 (50%), Gaps = 21/305 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA--FYTEEKITIQTIRQLSYTEIRAFIS 76
           + +L  + +ERGLS+ TL SY  D  + L+++    Y  + I++  +++  Y      + 
Sbjct: 16  EQFLDAMWMERGLSENTLASYRNDLMKLLVWMEKHRYRLDFISLSGLQE--YQSHLVDLD 73

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            ++T +       R LS I+   +YL + K+  +     + + K    LP+ ++E+Q   
Sbjct: 74  YKQTSR------ARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQV-- 125

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
              + LL        I+ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG K
Sbjct: 126 ---DALLEAPDPNDPIELRDKAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGGK 182

Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R+VP+  +    I  +     P  L       +F   R + +    F   I+      G
Sbjct: 183 ERLVPMGENAVDWIETFIQQGRPALLGDTSSDIVFPSKRARQMTRQTFWHRIKYYALIAG 242

Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           +     + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +I+
Sbjct: 243 IDTDQLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIH 298

Query: 315 DQTHP 319
            Q HP
Sbjct: 299 SQHHP 303


>gi|325103648|ref|YP_004273302.1| tyrosine recombinase XerD [Pedobacter saltans DSM 12145]
 gi|324972496|gb|ADY51480.1| tyrosine recombinase XerD [Pedobacter saltans DSM 12145]
          Length = 299

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/307 (31%), Positives = 159/307 (51%), Gaps = 19/307 (6%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E++ +   L++ER LS  ++ +Y  D  + + FL+  +  K    ++ +++  ++R FI 
Sbjct: 6   EKKGFESYLKLERSLSPNSVNAYVNDVDKLVQFLSVQSNPK----SLLKVNTQDLRNFIK 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                 +   +  R +SGIKSF KYL    +        + + K    LP  L   +  T
Sbjct: 62  WINEFGLIASTQSRIISGIKSFYKYLLLEDLIEHDPADIIESPKIRRKLPEVLTVHEINT 121

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           ++D   L     +K  + RN A+L +LY  GLR+SE  +L   ++  +   +++ GKG+K
Sbjct: 122 MLDGFDL-----SKPENIRNKAMLEILYSSGLRVSELTNLKLSDLYRELEFVKVVGKGNK 176

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRR 252
            R+VP+  S  K  LE Y L      LNIQ      +F   RG  L+  +    I+ L  
Sbjct: 177 ERLVPVGSSALKH-LEIY-LENIRNKLNIQKGNEDIIFLNKRGSKLSRVMVFMIIKDLAT 234

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            +G+  + + HT RHSFATHL+  G DLR+IQ +LGH  ++TT+IYT+++     D++ +
Sbjct: 235 AVGIKKNISPHTFRHSFATHLIEGGADLRAIQEMLGHESITTTEIYTHLDR----DFLKQ 290

Query: 313 IYDQTHP 319
              Q HP
Sbjct: 291 TITQFHP 297


>gi|237721804|ref|ZP_04552285.1| integrase [Bacteroides sp. 2_2_4]
 gi|299144803|ref|ZP_07037871.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_23]
 gi|229448673|gb|EEO54464.1| integrase [Bacteroides sp. 2_2_4]
 gi|298515294|gb|EFI39175.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_23]
          Length = 319

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/293 (32%), Positives = 150/293 (51%), Gaps = 27/293 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + Q L++E+ LS  TL +Y  D  + + FL   T E I +  +     ++++ F +  
Sbjct: 18  RKYQQYLKLEKSLSLNTLDAYLTDLDKLMSFL---TLEGINVLDV---CLSDLQRFAAGL 71

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               I  RS  R LSGIKSF ++L             +   K    LP  L  ++   ++
Sbjct: 72  HDIGIHPRSQARILSGIKSFFRFLILENYLEADPSELLEGPKIGFKLPEVLTVEEIDRII 131

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             V       +K    RN AIL  LY CGLR+SE ++L   ++  D+  ++++GKG K R
Sbjct: 132 SAV-----DRSKAEGQRNRAILETLYSCGLRVSELITLKLSDLYFDEGFIKVEGKGSKQR 186

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI---------RGKPLNPGVFQRYIRQ 249
           +VP+ P   +AI E     P D N   Q+ + +G          RGK L+  +    I++
Sbjct: 187 LVPISP---RAINEIKLYIP-DRN---QIEVKKGHEDFVFVSQRRGKGLSRIMIFHMIKE 239

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           L    G+  + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++
Sbjct: 240 LAEKAGITKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHID 292


>gi|325960047|ref|YP_004291513.1| tyrosine recombinase xerC [Methanobacterium sp. AL-21]
 gi|325331479|gb|ADZ10541.1| Tyrosine recombinase xerC [Methanobacterium sp. AL-21]
          Length = 331

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/235 (36%), Positives = 125/235 (53%), Gaps = 30/235 (12%)

Query: 92  LSGIKSFLKYLKKRKITTESNIL-------------------NMRNLKKSNSLPRALNEK 132
           L   K +++YLK+ K  +++ I                    +++  K++ SLP++LNE 
Sbjct: 89  LRAFKRYIRYLKREKNVSQNYIYLVTVVVKKFFEFGGIGVLKDVQTPKRTKSLPKSLNEN 148

Query: 133 QALTLVDNVLLHT-----SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           + L+L+ N + H      S  ++++  RN  IL LLY  GLR+SE ++L   +      T
Sbjct: 149 EILSLI-NAMDHDKDDYLSETSEFLRLRNKVILALLYSSGLRVSELVTLHSDSFDLTDRT 207

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           +RI+GKG+K RIV L     K +LE Y      +  +    LF    G  L P   Q  I
Sbjct: 208 IRIRGKGEKDRIV-LFDEQTKELLEGY----LQVRGDHSDYLFVNRSGNHLTPRYIQMMI 262

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +   +  G+    T H LRHSFATHLL NG D+R+IQ +LGH  LSTTQIYT+V+
Sbjct: 263 KDYAKAAGIKKKVTPHILRHSFATHLLKNGVDIRAIQQLLGHSNLSTTQIYTSVD 317


>gi|242279145|ref|YP_002991274.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
 gi|242122039|gb|ACS79735.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
          Length = 307

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 150/308 (48%), Gaps = 20/308 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +LQ   +ER LS LTLQ+Y  D  QF   +     E I I          IR ++S  
Sbjct: 8   KTFLQYCSLERSLSSLTLQAYRKDLSQFGETIDLNNVEVINIDK------ESIRTYLSNI 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTL 137
                  ++LKR L+ +KSF  +L++  +   S    +   + +S  LP+ + E     +
Sbjct: 62  -NHNYKPKTLKRKLATLKSFFNFLEREDLIPFSPFRKLHIKIDRSKELPKIIKETSLSRI 120

Query: 138 VDNVLL------HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           +    L      H S   + I  R+  ++ LL+  G+R+SE  S++P  I      L I 
Sbjct: 121 LKYAYLEKEKFDHKSKAYREI-TRDICVIELLFATGIRVSELCSISPSEIDLKNKKLIIN 179

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG+K R++PL  +    IL+ Y L  +   L+     F     KPL+    +R I++  
Sbjct: 180 GKGNKQRLIPLCENNSLKILKEYSLL-YQYALHDSTSFFLNRDLKPLSDQSVRRIIKKYS 238

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+  + T H  RH+ AT LL NG D+R+IQ++LGH  LS T+IYT+V+  +  D   
Sbjct: 239 EIAGVTETITPHMFRHTIATMLLENGVDIRNIQTLLGHSSLSVTEIYTHVSLSSQRD--- 295

Query: 312 EIYDQTHP 319
            I  + HP
Sbjct: 296 -ILAKKHP 302


>gi|84498372|ref|ZP_00997169.1| tyrosine recombinase [Janibacter sp. HTCC2649]
 gi|84381872|gb|EAP97755.1| tyrosine recombinase [Janibacter sp. HTCC2649]
          Length = 325

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 146/306 (47%), Gaps = 17/306 (5%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFL--------AFYTEEKITIQTIRQLSYTEIRAF 74
           ++L +ER  S  T+++Y  D R FL  +              +  +Q IR     ++RA+
Sbjct: 26  RHLRLERSRSPHTVRAYLADLRDFLAHVDGEGANEGGTPRAPQTALQDIR---LADLRAW 82

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +           S+ R  + +++F  +  ++        L +   K+  +LP  L +  A
Sbjct: 83  LGVLAAAGAARSSVARRSASLRTFFGWATRQGHVDVDPSLRLVAPKRHRTLPPVLAKDDA 142

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D V    + +   +  RN A+L LLY  G+R+ E   L   ++    + +R+ GKG
Sbjct: 143 AGLLD-VAAVAADDNDPVHVRNRAVLELLYATGVRVGELTGLDIDDVDFHSNVVRVIGKG 201

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRY 253
           DK R VP     R A+ ++ D+    L ++   P LF G RG+ ++P   +  +  +  +
Sbjct: 202 DKERRVPFGGPARSALAKWLDVGRPRLVVDGSGPGLFLGQRGRRIDPRQVRTLVHDMLTH 261

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +        H LRHS ATHLL  G DLR +Q +LGH  L+TTQIYT+V+ +     +   
Sbjct: 262 VPDAPDLGPHGLRHSAATHLLEGGADLRMVQELLGHASLATTQIYTHVSIER----LAAS 317

Query: 314 YDQTHP 319
           Y Q HP
Sbjct: 318 YAQAHP 323


>gi|78222639|ref|YP_384386.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15]
 gi|78193894|gb|ABB31661.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15]
          Length = 295

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/300 (31%), Positives = 146/300 (48%), Gaps = 15/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +E+GL+K +L SY  D  ++L FL     EK        +   ++  F++  + 
Sbjct: 8   FLNYLLVEKGLAKNSLDSYGRDMIRYLDFL-----EKRNCGEPSAVRPVDVADFLAHLKD 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS  R+LS ++ F ++L        +    +   K    LP+ L  ++       
Sbjct: 63  CGLAPRSRARALSAVRMFHRFLLVEGYAEANPTAIIEAPKTLAKLPQILAGREV-----E 117

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL         D R+ A+L LLY  GLR+SE + L  +++      L   GKG K R+V
Sbjct: 118 ALLAAPGSDSAQDMRDRAMLELLYATGLRVSELVGLGLRDVNVTAGYLMAFGKGGKERLV 177

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+  S   A+  Y      +++ N     LF    G  +    F   I++     G+  +
Sbjct: 178 PMGESACAAVSRYLAEARPEMDRNGDNAYLFLTRLGDRMTRQAFWNIIKKRAIEAGIRKT 237

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRHSFATHLL NG DLRS+Q++LGH  L+TTQIYT+V  +     +  I+++ HP
Sbjct: 238 ISPHTLRHSFATHLLENGADLRSVQAMLGHADLATTQIYTHVTRER----LKRIHEEYHP 293


>gi|28897283|ref|NP_796888.1| site-specific tyrosine recombinase XerD [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|260363587|ref|ZP_05776407.1| tyrosine recombinase XerD [Vibrio parahaemolyticus K5030]
 gi|260876248|ref|ZP_05888603.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AN-5034]
 gi|260896426|ref|ZP_05904922.1| tyrosine recombinase XerD [Vibrio parahaemolyticus Peru-466]
 gi|260902723|ref|ZP_05911118.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ4037]
 gi|28805492|dbj|BAC58772.1| integrase/recombinase XerD [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088405|gb|EFO38100.1| tyrosine recombinase XerD [Vibrio parahaemolyticus Peru-466]
 gi|308092863|gb|EFO42558.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AN-5034]
 gi|308107651|gb|EFO45191.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ4037]
 gi|308113317|gb|EFO50857.1| tyrosine recombinase XerD [Vibrio parahaemolyticus K5030]
          Length = 305

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 153/305 (50%), Gaps = 21/305 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF--YTEEKITIQTIRQLSYTEIRAFIS 76
           + +L  + +ERGLS+ TL SY  D  + L ++    Y  + I++  +++  Y      + 
Sbjct: 16  EQFLDAMWMERGLSENTLASYRNDLMKLLTWMDHHRYRLDFISLSGLQE--YQTYLVDLD 73

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            ++T +       R LS I+   +YL + K+  +     + + K    LP+ ++E+Q   
Sbjct: 74  YKQTSR------ARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQV-- 125

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
              + LL        ++ R+ A+L LLY  GLR++E +SLT +NI   Q  +R+ GKG K
Sbjct: 126 ---DALLDAPDPNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGK 182

Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R+VP+  +    I  +     P  L       +F   R + +    F   I+      G
Sbjct: 183 ERLVPMGENAVDWIETFIQQGRPALLGETSSDVVFPSKRARQMTRQTFWHRIKYYAVIAG 242

Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           +     + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +I+
Sbjct: 243 IDTDQLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIH 298

Query: 315 DQTHP 319
            Q HP
Sbjct: 299 SQHHP 303


>gi|307251104|ref|ZP_07533028.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
 gi|306856934|gb|EFM89066.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
          Length = 336

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 159/305 (52%), Gaps = 19/305 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L IE+  S+ TL +Y+   RQ L      ++  I+  T ++++   +R  I++   Q +G
Sbjct: 49  LRIEKQASQHTLSNYQ---RQLLAVSDMLSQAGIS--TWQEVNSATVRWIIAQSNKQGLG 103

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            +S+   L  ++ +  YL +++  + +  + ++  K S  LP+ ++ +QA  L    L  
Sbjct: 104 AKSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQAKQL----LTS 159

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            SHE    D R+ A++ L+Y  GLR+SE   L   ++      +R+ GKG+K RIVP+  
Sbjct: 160 DSHEPS--DLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGS 217

Query: 205 SVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              +A+  +  +   F    N    +F   RG  L+    Q  +++     GL      H
Sbjct: 218 KALEALNRWLAVRNQFKPQDN---AVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPH 274

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            LRHSFATH+L   GDLR+IQ +LGH  L+TTQIYT+++ ++    + +IYD  HP   +
Sbjct: 275 KLRHSFATHMLEASGDLRAIQELLGHSNLATTQIYTHLDFQH----LAKIYDAAHPRAKR 330

Query: 324 KDKKN 328
           K + +
Sbjct: 331 KKQDD 335


>gi|242242770|ref|ZP_04797215.1| tyrosine recombinase XerD [Staphylococcus epidermidis W23144]
 gi|242233906|gb|EES36218.1| tyrosine recombinase XerD [Staphylococcus epidermidis W23144]
          Length = 295

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 155/302 (51%), Gaps = 19/302 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTI-RQLSYTEIRAFISKR 78
           +L  ++IE+GLS  T+ +Y  D +++  +L    + KI+ I  I RQ+    +   I   
Sbjct: 8   YLNFIQIEKGLSNNTIGAYRRDLKKYKDYLE---DNKISHIDFIDRQIIQECLGHLIDMG 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           ++ K    SL R +S I+SF ++  + K   +   + +   K    LP  L   + +   
Sbjct: 65  QSSK----SLARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEIDEVI--- 117

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL T    K    R+  +L LLY  G+R++E + L  +++      +R+ GKG+K R
Sbjct: 118 --ALLETPDLAKNNGYRDRTMLELLYATGMRVTEIIQLDVEDVNLMMGFVRVFGKGNKER 175

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           IVPL  +V + +  Y +   P  L       LF  + GK L+     + I+Q      + 
Sbjct: 176 IVPLGDTVIEYLTTYIETVRPQLLKQTTTQALFLNMHGKSLSRQGIWKIIKQYGLKANIN 235

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y Q 
Sbjct: 236 KTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYTQF 291

Query: 318 HP 319
           HP
Sbjct: 292 HP 293


>gi|229524404|ref|ZP_04413809.1| tyrosine recombinase XerD [Vibrio cholerae bv. albensis VL426]
 gi|229337985|gb|EEO03002.1| tyrosine recombinase XerD [Vibrio cholerae bv. albensis VL426]
          Length = 302

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 156/304 (51%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  +  ERGL++ T+ SY  D  + L ++A   + +  +  I      E ++++S+ 
Sbjct: 13  EQFLDTMWFERGLAENTVTSYRNDLSKLLEWMA---QNQYRLDFISFAGLQEYQSWLSE- 68

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R LS I+   +YL + K+  +     + + K    LP+ L+E Q     
Sbjct: 69  --QNYKPTSKARMLSAIRRLFQYLYREKVRADDPSALLISPKLPTRLPKDLSEAQV---- 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL        ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG K R
Sbjct: 123 -EALLSAPDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKER 181

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VP+  +  + I E +      L L  Q    +F   RG+ +    F   I+      G+
Sbjct: 182 LVPMGENAIEWI-ETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGI 240

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            +   + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + ++++
Sbjct: 241 DVEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHN 296

Query: 316 QTHP 319
           + HP
Sbjct: 297 EHHP 300


>gi|113461426|ref|YP_719495.1| site-specific tyrosine recombinase XerD [Haemophilus somnus 129PT]
 gi|170718469|ref|YP_001783684.1| site-specific tyrosine recombinase XerD [Haemophilus somnus 2336]
 gi|112823469|gb|ABI25558.1| tyrosine recombinase XerD subunit [Haemophilus somnus 129PT]
 gi|168826598|gb|ACA31969.1| tyrosine recombinase XerD [Haemophilus somnus 2336]
          Length = 297

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/290 (32%), Positives = 158/290 (54%), Gaps = 27/290 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQTIRQLSYTEIRAFISKRR 79
           +L  L +E+GLS+ T+QSY  D    L  L+ + E + ++++T   L   +++ F+ +R 
Sbjct: 10  FLNELWLEKGLSENTVQSYRLD----LTALSQWLEPQGLSLET---LDVVDLQTFLGERL 62

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           TQ     S  R LS ++   +YL + K  ++     + + K  + LP+ L E+Q   L  
Sbjct: 63  TQGYKATSTARMLSALRKLFQYLYREKYRSDDPSAVLSSPKLPSRLPKYLTEQQVTDL-- 120

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              L+T +    ++ R+ A+L +LY  GLR++E +SL+  +I  +Q  +R+ GKG K RI
Sbjct: 121 ---LNTPNTEIPLELRDKAMLEMLYATGLRVTELVSLSLDSININQGVVRVIGKGKKERI 177

Query: 200 VPLLPS----VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           VP+       +R+ IL          + ++  P  RG +         Q +  +++ Y  
Sbjct: 178 VPMGEEANYWLRQFILYGRSFLLAGQSSDVVFPSRRGTQM------TRQTFWHRVKYYAI 231

Query: 256 LP-LSTTA---HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           L  + T+A   H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V
Sbjct: 232 LAEIDTSALSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHV 281


>gi|319400839|gb|EFV89058.1| tyrosine recombinase XerD [Staphylococcus epidermidis FRI909]
          Length = 295

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 155/302 (51%), Gaps = 19/302 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTI-RQLSYTEIRAFISKR 78
           +L  ++IE+GLS  T+ +Y  D +++  +L    + KI+ I  I RQ+    +   I   
Sbjct: 8   YLNFIQIEKGLSNNTIGAYRRDLKKYKDYLE---DNKISHIDFIDRQIIQECLGHLIDMG 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           ++ K    SL R +S I+SF ++  + K   +   + +   K    LP  L   + +   
Sbjct: 65  QSSK----SLARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEINEVI--- 117

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL T    K    R+  +L LLY  G+R++E + L  +++      +R+ GKG+K R
Sbjct: 118 --ALLETPDLAKNNGYRDRTMLELLYATGMRVTEIIQLDVEDVNLMMGFVRVFGKGNKER 175

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           IVPL  +V + +  Y +   P  L       LF  + GK L+     + I+Q      + 
Sbjct: 176 IVPLGDTVIEYLTTYIETVRPQLLKQTTTQALFLNMHGKSLSRQGIWKIIKQYGLKANIN 235

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y Q 
Sbjct: 236 KTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYTQF 291

Query: 318 HP 319
           HP
Sbjct: 292 HP 293


>gi|260885407|ref|ZP_05896922.1| integrase/recombinase XerC [Prevotella tannerae ATCC 51259]
 gi|260852293|gb|EEX72162.1| integrase/recombinase XerC [Prevotella tannerae ATCC 51259]
          Length = 299

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 152/305 (49%), Gaps = 21/305 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLI-FLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           Q +L  L  ++G S LT+  Y    R  L  F AFY  ++ T+ T + +    +R +I  
Sbjct: 10  QRFLSYLASDKGYSPLTIMKY----RDVLEGFEAFYISQEATL-TWQTIDADLVRRWIVW 64

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R    I  R+++R LS ++SF +YL    +  +  +  ++N K +  LP  + + +   L
Sbjct: 65  RMDDGIVGRTVRRDLSALRSFYRYLLVLGLIEKDPMCFVKNPKSAQPLPAFVRQSEMDRL 124

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            D      + E +    R+  IL   Y  G+R +E L++   +I   +  +R+ GK +K 
Sbjct: 125 FDKTHFPETFEGQ----RDYLILLTFYSTGVRRAELLAMQWVDIDLSRCEVRVTGKRNKQ 180

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RI+P    + +A   YY     DL  ++  PLF    G+PL P    R +     YL L 
Sbjct: 181 RIIPFGAELAEAFQAYY-AARMDLVKHMSGPLFIQSNGRPLQPTQVGRIVHD---YLSLV 236

Query: 258 LST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            +    + H LRHSFAT +L+NG DL +++ +LGH  L+TT IYT+V  +     +++ Y
Sbjct: 237 TNIKKRSPHVLRHSFATAMLNNGADLMAVKELLGHSNLNTTAIYTHVTPEE----LLKEY 292

Query: 315 DQTHP 319
              HP
Sbjct: 293 KHAHP 297


>gi|153839359|ref|ZP_01992026.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ3810]
 gi|149747107|gb|EDM58095.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ3810]
 gi|328472047|gb|EGF42924.1| site-specific tyrosine recombinase XerD [Vibrio parahaemolyticus
           10329]
          Length = 305

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 153/305 (50%), Gaps = 21/305 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF--YTEEKITIQTIRQLSYTEIRAFIS 76
           + +L  + +ERGLS+ TL SY  D  + L ++    Y  + I++  +++  Y      + 
Sbjct: 16  EQFLDAMWMERGLSENTLASYRNDLMKLLTWMEHHRYRLDFISLSGLQE--YQTYLVDLD 73

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            ++T +       R LS I+   +YL + K+  +     + + K    LP+ ++E+Q   
Sbjct: 74  YKQTSR------ARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQV-- 125

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
              + LL        ++ R+ A+L LLY  GLR++E +SLT +NI   Q  +R+ GKG K
Sbjct: 126 ---DALLDAPDPNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGK 182

Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R+VP+  +    I  +     P  L       +F   R + +    F   I+      G
Sbjct: 183 ERLVPMGENAIDWIETFIQQGRPALLGETSSDVVFPSKRARQMTRQTFWHRIKYYAVIAG 242

Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           +     + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +I+
Sbjct: 243 IDTDQLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIH 298

Query: 315 DQTHP 319
            Q HP
Sbjct: 299 SQHHP 303


>gi|118594103|ref|ZP_01551450.1| Tyrosine recombinase XerC [Methylophilales bacterium HTCC2181]
 gi|118439881|gb|EAV46508.1| Tyrosine recombinase XerC [Methylophilales bacterium HTCC2181]
          Length = 300

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 152/296 (51%), Gaps = 19/296 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           ++ E+ LS LT++SY  D R          + ++  + ++     +IR  IS    + I 
Sbjct: 14  IKFEKRLSALTIKSYLRDIRLL--------DSELQGKDLQSYQVDDIRRGISVFHAKGIN 65

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            +SL R LS  + F  +L  R   + + ++ ++  K    LP+ L+   A+ LV      
Sbjct: 66  GKSLSRMLSSWRGFFDFLNHRYEFSLNPVMGIKAPKAKKLLPQTLSIDHAIKLV------ 119

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           +  +  ++  R+ AI+ L Y  GLR+SE  ++   +I  D+ T  I GKG+K RIVP+  
Sbjct: 120 SITDKSFLGLRDRAIMELFYSSGLRLSELAAMKLADINMDEQTASILGKGNKSRIVPIGS 179

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              +A+ ++  +     + N +   LF   +G  L     Q  ++      G+P +   H
Sbjct: 180 HALQALNDWIVMRKKISDFNPRTTHLFLSEKGNALGVRSIQYRLKFWAIKQGIPENIHPH 239

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            LRHSFA+HLL +  DLR++Q +LGH  +STTQIYT+++ ++    + +IYD  HP
Sbjct: 240 LLRHSFASHLLQSSQDLRAVQELLGHANISTTQIYTHLDYQH----LSKIYDDAHP 291


>gi|145633727|ref|ZP_01789452.1| tyrosine recombinase [Haemophilus influenzae 3655]
 gi|144985386|gb|EDJ92213.1| tyrosine recombinase [Haemophilus influenzae 3655]
          Length = 295

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/304 (31%), Positives = 151/304 (49%), Gaps = 25/304 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L IER +S  TL +Y+      +  LA     +  I    Q++ + +R  +++ + Q + 
Sbjct: 12  LRIERQMSPHTLTNYQHQLDATIKILA-----QQDIYAWAQVTPSVVRFILAESKKQGLK 66

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           ++SL   LS ++ FL +L ++     +    +   K+   LP+ ++ +Q    V  +L +
Sbjct: 67  EKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGKHLPKNMDGEQ----VQQLLAN 122

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            S E   ID R+ AIL L+Y  GLR+SE   L   +I      +R+ GKG+K R+VP   
Sbjct: 123 DSKEP--IDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGR 180

Query: 205 SVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
               AI E+  +     P D        LF    G  ++    Q+ +       GL    
Sbjct: 181 YASHAIQEWLKVRALFNPKDE------ALFVSQLGNRISHRAIQKRLETWGIRQGLNSHL 234

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
             H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    + E+YDQ HP 
Sbjct: 235 NPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEVYDQAHPR 290

Query: 321 ITQK 324
             +K
Sbjct: 291 AKRK 294


>gi|94309002|ref|YP_582212.1| site-specific tyrosine recombinase XerC [Cupriavidus metallidurans
           CH34]
 gi|93352854|gb|ABF06943.1| tyrosine-based site-specific tyrosine recombinase XerC [Cupriavidus
           metallidurans CH34]
          Length = 369

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/326 (29%), Positives = 156/326 (47%), Gaps = 37/326 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ---TIRQLSYTEIRAFISK 77
           +L  L   R L+  TL SY  D       L+    + I +     +  L    IR+F ++
Sbjct: 34  YLDWLATSRKLAAHTLTSYGHD-------LSVLQSQAIRLAPGVALLALETRHIRSFAAR 86

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALT 136
                +  R++ R+LS  + F  +  +     +SN ++ +R  K+   LP+AL+ + A+ 
Sbjct: 87  LHGNGLSARTIARTLSAWRGFYLWAARHGHGVQSNPVDGVRAPKRGRPLPKALSVEHAVA 146

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-----------DQ 185
           LV     H   +T     R+ A+  L Y  GLR+SE + L  +   D           D 
Sbjct: 147 LV----AHRQDDTN-ESLRDQAVFELFYSSGLRLSELIQLDVRYTEDGDYRSSGWLDLDG 201

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNP 240
           + + + GKG + R VP+     +A+  +       L P  L  +    LF G RG+ L  
Sbjct: 202 AEVTVLGKGSRRRTVPVGSKAIQALKAWIHVREMMLRPGALPEDAHA-LFLGTRGRRLPI 260

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              Q+ I++     G+P     H LRHSFATH+L + GDLR++Q +LGH  +STTQIYT+
Sbjct: 261 STVQQRIKRQALAAGVPSDVHPHMLRHSFATHMLQSSGDLRAVQEMLGHASISTTQIYTS 320

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKDK 326
           ++ ++    + ++YDQ HP   +  K
Sbjct: 321 LDFQH----LAKVYDQAHPRAGRASK 342


>gi|319896642|ref|YP_004134835.1| site-specific recombinase xerd [Haemophilus influenzae F3031]
 gi|317432144|emb|CBY80495.1| Site-specific recombinase XerD [Haemophilus influenzae F3031]
          Length = 297

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 152/295 (51%), Gaps = 17/295 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           IE+GLS+ T+QSY  D      +L    +  ++++T   L   +++ F+ +R  +     
Sbjct: 16  IEKGLSENTVQSYRLDLTALCDWL---DKNGLSLET---LDAVDLQGFLGERLEKGYKAT 69

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R LS ++   +YL + K   +     + + K  + LP+ L E+Q      + LL+T 
Sbjct: 70  STARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQV-----SDLLNTP 124

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG+K RIVP+    
Sbjct: 125 DVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184

Query: 207 RKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHT 264
              + ++     P  LN      +F   R + +    F   ++       +     + H 
Sbjct: 185 AYWVRQFMLYGRPVLLNGQSSDVVFPSQRTQQMTRQTFWHRVKHYAILADIDADALSPHV 244

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++++ HP
Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER----LKRLHERFHP 295


>gi|225620975|ref|YP_002722233.1| site-specific recombinase XerD [Brachyspira hyodysenteriae WA1]
 gi|225215795|gb|ACN84529.1| site-specific recombinase XerD [Brachyspira hyodysenteriae WA1]
          Length = 297

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 151/285 (52%), Gaps = 14/285 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L    +E+GLS  TL+SY+   R  +I+L F +  K   ++I + +  +I  F+S+R+ 
Sbjct: 2   YLNYEAVEKGLSSNTLESYK---RDIVIYLDFLSRNK---KSILKATRKDIEKFLSERKE 55

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q    R++ R+   I +  K+L      +++   N+  ++    LP +L +    T VD+
Sbjct: 56  QGSKSRTVARNKVSIVNLYKFLVMENYISKNPTDNLEVIRLKRVLPESLTD----TEVDD 111

Query: 141 VL-LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           +L +H     K +  R+ AI  L+Y  GLR+SE  SL   +I  +   L+I GKG + RI
Sbjct: 112 LLAVHNEKTDKGL--RDKAIFELMYSSGLRVSEICSLKIDDIFFEGKYLKICGKGKRERI 169

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+       +  Y       +    +   LF   RG  ++     + +++  +   +  
Sbjct: 170 VPINDRALDILQRYIQTSRVIMVKGKKTSELFLNFRGDKISRVGIWKIVKEAMKKSKIEK 229

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +   HTLRHSFATHL+ +G DLR++Q +LGH  ++TT+IYT+V+S
Sbjct: 230 NIYPHTLRHSFATHLIQHGADLRAVQRMLGHSDITTTEIYTHVDS 274


>gi|254508834|ref|ZP_05120944.1| tyrosine recombinase XerD [Vibrio parahaemolyticus 16]
 gi|219548220|gb|EED25235.1| tyrosine recombinase XerD [Vibrio parahaemolyticus 16]
          Length = 298

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 152/303 (50%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + +ERGLS+ TL SY  D  + L ++   ++    +  I      E + +++  
Sbjct: 9   EQFLDAMWMERGLSENTLASYRNDLSKLLQWM---SKHNYRLDFISLSGLQEYQTWLADE 65

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             ++    S  R LS I+   +YL + KI  +     + + K    LP+ L+E Q     
Sbjct: 66  GYKQT---SRARMLSAIRRLFQYLHREKIRADDPSALLVSPKLPKRLPKDLSEAQV---- 118

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            + LL        ++ R+ A+L LLY  GLR++E +SLT +NI   Q  +R+ GKG K R
Sbjct: 119 -DALLDAPDPNDPMELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKER 177

Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+  +    I  + +    +L   N    +F   R + +    F   I+      G+ 
Sbjct: 178 LVPMGENAVDWIETFLEQGRSELLGENTSDVVFPSKRARQMTRQTFWHRIKHYAVIAGID 237

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +++ +
Sbjct: 238 SEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHSE 293

Query: 317 THP 319
            HP
Sbjct: 294 HHP 296


>gi|163735189|ref|ZP_02142625.1| tyrosine recombinase XerD [Roseobacter litoralis Och 149]
 gi|161391647|gb|EDQ15980.1| tyrosine recombinase XerD [Roseobacter litoralis Och 149]
          Length = 323

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 152/316 (48%), Gaps = 23/316 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+    E G ++ TL +Y  D + F  FL   T   +      Q    ++ A++     
Sbjct: 11  FLEAQAAELGAARNTLLAYGRDLKDFDSFL---THRNLDFHAAAQ---ADVEAYLIACDA 64

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   +  R LS +K   ++  +    +++  L +    +   LP+ L+E +   L++ 
Sbjct: 65  EGLSKATRARRLSAVKQLYRFAFEEGWRSDNPALQITGPGRDRKLPKTLSEAEVDRLLEA 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
               +S       ARN+ ++ LLY  G+R++E +SL       D   L I+GKG K R+V
Sbjct: 125 A--RSSGRNTADRARNTCLMELLYATGMRVTELVSLPVSAARGDPRMLLIRGKGGKERMV 182

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQ--------LPLFRGIRGKPLNPGVFQRYIRQLRR 252
           PL P  R A  E+  L      L           L   RG+ G  L    F   I++L  
Sbjct: 183 PLSPPARDATSEWLRLRDEKEALKKADGHPPSRFLYASRGVSGH-LTRNRFYLLIKELAV 241

Query: 253 YLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             G+ P   T HTLRH+FATHLL+NG DLRSIQ++LGH  ++TT+IYT+V      + ++
Sbjct: 242 DAGVSPSKVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLEARLSELVL 301

Query: 312 EIYDQTHPSITQKDKK 327
                TH  + Q+D +
Sbjct: 302 -----THHPLAQEDPR 312


>gi|154498071|ref|ZP_02036449.1| hypothetical protein BACCAP_02052 [Bacteroides capillosus ATCC
           29799]
 gi|150273061|gb|EDN00218.1| hypothetical protein BACCAP_02052 [Bacteroides capillosus ATCC
           29799]
          Length = 298

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 154/311 (49%), Gaps = 22/311 (7%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
             + LKE +++L+    E+  S  TL SY  D  Q+  +L     E +T +   Q    +
Sbjct: 6   GMDYLKEYESYLKT---EKKASLNTLSSYLRDIHQYAGWL---EGESLTAEQANQ---AD 56

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +  ++     +     ++ RSL+ +KSF  +L    + T + +  +   K    LP+ L 
Sbjct: 57  VERYVKHLSGKGKSVATVTRSLASMKSFYNFLIGAGVVTINPVRGITPAKVERKLPQILT 116

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            K+      ++ L     +     R+ A+L LLY  G+R+SE + L  +++      +R 
Sbjct: 117 SKEV-----DLFLEQPDPSDAKGCRDKAMLELLYATGIRVSELIGLNLEHVNLSAGFVRC 171

Query: 191 QGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
            G+  K RI+PL P+  +A+  Y   + P  +    +  LF  + G+ ++   F + I+ 
Sbjct: 172 VGR-SKERIIPLYPAAVRALTAYMTQVRPQMIEHPDEKALFVNMNGERMSRQGFWKIIKH 230

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN-VNSKNGGD 308
            +   G+    T HTLRHSFA HLL NG DLRSIQ +LGH  +S+TQIY   VN K    
Sbjct: 231 YQEKAGIRKDITPHTLRHSFAAHLLENGADLRSIQEMLGHADISSTQIYAQLVNQK---- 286

Query: 309 WMMEIYDQTHP 319
            + ++Y++ HP
Sbjct: 287 -LKDVYNKAHP 296


>gi|295675162|ref|YP_003603686.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1002]
 gi|295435005|gb|ADG14175.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1002]
          Length = 307

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 154/316 (48%), Gaps = 29/316 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +LE ER LS+ TL+ Y  +  +  +            + +  L+  +IR  +++   
Sbjct: 10  YLSHLEHERRLSEHTLRGYTHELAELKLL--------AKGRPLESLTAVDIRGAVARAHA 61

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS+   LS  ++F ++L        + +  +R  K++ +LP+AL+      L+D+
Sbjct: 62  GGLTARSIGHRLSAWRAFYRWLAGHVELPANPVAAVRAPKQAKTLPKALSVDDTARLMDS 121

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL-----------TPQNIMDDQSTLR 189
               +         R+ A+L L Y  GLR++E + L           +   +  D   + 
Sbjct: 122 PPADSPEGL-----RDHAMLELFYSSGLRLAELVGLDVRFADVDGYRSAGWLKLDSGEVE 176

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG++ R+VP+  S   A L  +      +  +   PLF   RG  L+P V +  +++
Sbjct: 177 VLGKGNRRRVVPV-GSKAVAALNAWLAVRERMVRHDPHPLFLSARGNRLSPNVVRERVKR 235

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+P +   H LRHSFATH+L + GDLR++Q +LGH  ++ TQ+YT ++ ++    
Sbjct: 236 AALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTGLDFQH---- 291

Query: 310 MMEIYDQTHPSITQKD 325
           +  +YD  HP   +++
Sbjct: 292 LAHVYDSAHPRAKKRN 307


>gi|308455404|ref|XP_003090242.1| hypothetical protein CRE_23788 [Caenorhabditis remanei]
 gi|308265127|gb|EFP09080.1| hypothetical protein CRE_23788 [Caenorhabditis remanei]
          Length = 319

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 150/314 (47%), Gaps = 19/314 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  +E E G S  T+++Y  D      +L     +      + +L    +R ++  R+
Sbjct: 9   GFLSAVEFEYGYSPQTVRAYRRDLLSLSEYLEASAPDSGPESDVSELGLETLRDWLWSRQ 68

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q +   +L R+++ +KSF K+L++ ++   +    +R  K  ++LPR L++ Q   ++D
Sbjct: 69  EQGLAQSTLARNVATLKSFGKWLEQHRLVAGNPASRLRTPKAPSALPRVLSDDQISRILD 128

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                 +     I  R+ A+L LLY   LR+SE   L    +   Q T+R+ GKG K R+
Sbjct: 129 RAE-SLARGGDPIAVRDRALLELLYATALRVSEVCGLDLSGLDRIQRTVRVVGKGAKERV 187

Query: 200 VPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVF------QRYIRQLRR 252
           VP       A+ EY      +L N+        G+  +     VF      +    Q+ R
Sbjct: 188 VPFGAPAALALEEYLSSARSELMNVATDAASSAGLVRESATTAVFLSASGSRIQAHQIYR 247

Query: 253 YLGLPLSTTA-------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +   L           HTLRH+ ATHLL+ G DLR +Q +LGH  L++TQ+YT+V+++ 
Sbjct: 248 LVARSLEQEPGSGPRGPHTLRHTAATHLLNGGADLRVVQEMLGHSSLASTQVYTHVSTER 307

Query: 306 GGDWMMEIYDQTHP 319
               + + Y Q HP
Sbjct: 308 ----LAQSYRQAHP 317


>gi|16272618|ref|NP_438836.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae Rd
           KW20]
 gi|260581486|ref|ZP_05849296.1| tyrosine recombinase XerC [Haemophilus influenzae RdAW]
 gi|260582981|ref|ZP_05850764.1| tyrosine recombinase XerC [Haemophilus influenzae NT127]
 gi|1175024|sp|P44818|XERC_HAEIN RecName: Full=Tyrosine recombinase xerC
 gi|1573676|gb|AAC22336.1| integrase/recombinase (xerC) [Haemophilus influenzae Rd KW20]
 gi|260091846|gb|EEW75799.1| tyrosine recombinase XerC [Haemophilus influenzae RdAW]
 gi|260093965|gb|EEW77870.1| tyrosine recombinase XerC [Haemophilus influenzae NT127]
          Length = 295

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 152/304 (50%), Gaps = 25/304 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L IER +S  T+ +Y+      +  LA     +  I +  Q++ + +R  +++ + Q + 
Sbjct: 12  LRIERQMSPHTITNYQHQLDATIKILA-----QQDIHSWTQVTPSVVRFILAESKKQGLK 66

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           ++SL   LS ++ FL +L ++     +    +   K+   LP+ ++ +Q    V  +L +
Sbjct: 67  EKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQ----VQQLLAN 122

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            S E   ID R+ AIL L+Y  GLR+SE   L   +I      +R+ GKG+K R+VP   
Sbjct: 123 DSKEP--IDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGR 180

Query: 205 SVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
               AI E+  +     P D        LF    G  ++    Q+ +       GL    
Sbjct: 181 YASHAIQEWLKVRALFNPKDE------ALFVSQLGNRISHRAIQKRLETWGIRQGLNSHL 234

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
             H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    + E+YDQ HP 
Sbjct: 235 NPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEVYDQAHPR 290

Query: 321 ITQK 324
             +K
Sbjct: 291 AKRK 294


>gi|227503375|ref|ZP_03933424.1| site-specific tyrosine recombinase XerC [Corynebacterium accolens
           ATCC 49725]
 gi|227075878|gb|EEI13841.1| site-specific tyrosine recombinase XerC [Corynebacterium accolens
           ATCC 49725]
          Length = 305

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 141/297 (47%), Gaps = 31/297 (10%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +G ++ T++ Y  D +               I T    +   +R ++     +     +L
Sbjct: 32  KGRAEATVRGYRADLKNL----------AQDIDTFADFNLNNLRQWLGNAVAEGKARATL 81

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R  + +K+F  + ++    T      +   K    LP  +  +QA  LV N +  +  E
Sbjct: 82  ARRTASVKAFSTWAEREGYLTRDVAARLVTPKVGQHLPTVMAPQQAGELVGNAV--SVDE 139

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
             +   R+SAIL LLY  G+R++E + L  +++   +ST R+ GKG+K R+VP   +   
Sbjct: 140 AHF--QRDSAILELLYASGMRVAELVRLDIEDVDFKRSTARVTGKGNKQRVVPFGAAATD 197

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA------ 262
           A+ ++ D    ++       +F G RG  ++        RQ+RR +    + T       
Sbjct: 198 ALQQWIDGGRKEMARGETQAIFVGSRGARIDQ-------RQVRRIVDKAATVTGTSGLTP 250

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           H +RH  ATHLL  G DLR +Q +LGH  LSTTQIYT+V++K     + ++Y Q HP
Sbjct: 251 HGVRHLAATHLLEGGADLRVVQELLGHSSLSTTQIYTHVSAKR----LKQVYSQAHP 303


>gi|258423907|ref|ZP_05686792.1| tyrosine recombinase XerC [Staphylococcus aureus A9635]
 gi|257845936|gb|EEV69965.1| tyrosine recombinase XerC [Staphylococcus aureus A9635]
          Length = 298

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/322 (30%), Positives = 165/322 (51%), Gaps = 42/322 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +L  L++ER  S+ TL+SY+ D  QF  FL    +E + + T     Y + R ++S 
Sbjct: 5   QEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLE---QEHLQLNT---FEYKDARNYLSY 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNEKQ 133
             +  +   S+ R +S +++F +Y     +T + NI+N    + + KK   LP+   E++
Sbjct: 59  LYSNHLKRTSVSRKISTLRTFYEYW----MTLDENIINPFVQLVHPKKEKYLPQFFYEEE 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L   V   TS        R+  IL LLY  G+R+SE +++  Q+I    + + + GK
Sbjct: 115 MEALFKTVEEDTSK-----SLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDL------CPFDLNLNIQLPLFRGIRGKPLNP-GVFQRY 246
           G K R VP     R++I  Y +       C  D        L   ++G+ +   GV  RY
Sbjct: 170 GSKERFVPFGAYCRQSIENYLEHFKPIQSCNHDF-------LIVNMKGEAITERGV--RY 220

Query: 247 IRQ--LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +    ++R  G+      H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++
Sbjct: 221 VLNDIVKRTAGVS-EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQ 279

Query: 305 NGGDWMMEIYDQTHPSITQKDK 326
                + ++Y   HP   ++++
Sbjct: 280 Q----LRKVYLNAHPRAKKENE 297


>gi|145631901|ref|ZP_01787657.1| tyrosine recombinase [Haemophilus influenzae R3021]
 gi|148826672|ref|YP_001291425.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           PittEE]
 gi|229847208|ref|ZP_04467312.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           7P49H1]
 gi|166918886|sp|A5UE41|XERC_HAEIE RecName: Full=Tyrosine recombinase xerC
 gi|144982462|gb|EDJ90028.1| tyrosine recombinase [Haemophilus influenzae R3021]
 gi|148716832|gb|ABQ99042.1| tyrosine recombinase [Haemophilus influenzae PittEE]
 gi|229809884|gb|EEP45606.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           7P49H1]
 gi|309973815|gb|ADO97016.1| Site-specific tyrosine recombinase XerC [Haemophilus influenzae
           R2846]
          Length = 295

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 151/304 (49%), Gaps = 25/304 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L IER +S  T+ +Y+      +  LA     +  I    Q++ + +R  +++ + Q + 
Sbjct: 12  LRIERQMSPHTITNYQHQLDATIKILA-----QQDIHAWTQVTPSVVRFILAESKKQGLK 66

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           ++SL   LS ++ FL +L ++     +    +   K+   LP+ ++ +Q    V  +L +
Sbjct: 67  EKSLALRLSALRRFLSFLVQQGELKVNPTTGISAPKQGKHLPKNMDGEQ----VQQLLAN 122

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            S E   ID R+ AIL L+Y  GLR+SE   L   +I      +R+ GKG+K R+VP   
Sbjct: 123 DSKEP--IDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGR 180

Query: 205 SVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
               AI E+  +     P D        LF    G  ++    Q+ +       GL    
Sbjct: 181 YASHAIQEWLKVRALFNPKDE------ALFVSQLGNRISHRAIQKRLETWGIRQGLNSHL 234

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
             H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    + E+YDQ HP 
Sbjct: 235 NPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEVYDQAHPR 290

Query: 321 ITQK 324
             +K
Sbjct: 291 AKRK 294


>gi|326799953|ref|YP_004317772.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21]
 gi|326550717|gb|ADZ79102.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21]
          Length = 298

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 155/306 (50%), Gaps = 22/306 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++ Q L +ER L+K ++++Y  D  + L   A Y+ +K     + Q    +IR F+   
Sbjct: 8   KDFKQYLRLERSLAKNSIEAYLHDVEK-LRQHALYSHKKDPNAILTQ----DIRDFLEWI 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            +  +   S  R LSGIK+F  YL        +    +   +    LP  L+  +   L+
Sbjct: 63  YSLGMSAHSQARVLSGIKTFYHYLTLEGAMEHNPAALIEAPRLGRKLPDTLSIVEIDALI 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             + L T         RN A+L +LY CGLR+SE ++L   N+  +   +R+ GKG+K R
Sbjct: 123 GAIDLSTPE-----GLRNKAMLEVLYSCGLRVSELVNLKISNLFLEIEFIRVTGKGNKER 177

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRY 253
           ++P+  S  K +  Y      +     Q P     +F   RG PL+  +    I++L   
Sbjct: 178 LIPIGHSAIKHLQIYLQHTRKE---GPQKPGMEDYVFLNRRGSPLSRVMVFLIIKELAIK 234

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +GL  + + HT RHSFATHL+  G DLR++Q +LGH  +STT+IYT+++     D++  +
Sbjct: 235 VGLKKTISPHTFRHSFATHLIEGGADLRAVQDMLGHESISTTEIYTHLDR----DYLRSV 290

Query: 314 YDQTHP 319
             + HP
Sbjct: 291 MIEFHP 296


>gi|54307771|ref|YP_128791.1| site-specific tyrosine recombinase XerD [Photobacterium profundum
           SS9]
 gi|46912194|emb|CAG18989.1| putative integrase/recombinase XerD [Photobacterium profundum SS9]
          Length = 292

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/305 (31%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + +ERGLS+ TL SY  D    L  L  +++EK     +  LS  +++ +    
Sbjct: 3   ERFLDAMWMERGLSENTLMSYRND----LTKLRRWSDEKS--YRLVTLSSDDLQRYQQWL 56

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R +S I+   +YL + K+  +     M + +    LP+ L E+Q   L+
Sbjct: 57  FDADFKQTSRARMVSAIRRLYQYLYREKVRDDDPSSMMISPRLPKRLPKDLTEEQVGALL 116

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D            I+ R+ A+L LLY  GLR++E +SLT +N    Q  +R+ GKG K R
Sbjct: 117 D-----APDTNNPIELRDKAMLELLYATGLRVTELVSLTMENTNLRQGVVRVLGKGGKER 171

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+  +    I E+ D   P  L       LF   R + +    F   I+      G+ 
Sbjct: 172 LVPMGENAIDWIEEFIDSGRPLLLGEKSSDVLFPSKRARQMTRQTFWHRIKYYAVIAGID 231

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             T + H +RH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++  
Sbjct: 232 TDTLSPHVMRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHAT 287

Query: 317 THPSI 321
            HP +
Sbjct: 288 HHPRV 292


>gi|323493661|ref|ZP_08098782.1| site-specific tyrosine recombinase XerD [Vibrio brasiliensis LMG
           20546]
 gi|323312184|gb|EGA65327.1| site-specific tyrosine recombinase XerD [Vibrio brasiliensis LMG
           20546]
          Length = 302

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 151/303 (49%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L ++ +ERGLS+ TL SY  D    +  L + T     +  I      E ++++S  
Sbjct: 13  EQFLDSMWMERGLSENTLASYRND---LVKLLQWMTANNYRLDFISLSGLQEYQSWLSDS 69

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             ++    S  R LS I+   +YL + KI ++     + + K    LP+ L E Q     
Sbjct: 70  GYKQT---SRARMLSAIRRLFQYLHREKIRSDDPSALLVSPKLPKRLPKDLTEDQV---- 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL+       ++ R+ A+L LLY  GLR++E +SLT +NI   Q  +R+ GKG K R
Sbjct: 123 -EALLNAPDPNDAMELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKER 181

Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+  +  + I  +      +L        +F   R + +    F   I+      G+ 
Sbjct: 182 LVPMGENAVEWIETFLQQGRSELLGETTSDVVFPSKRARQMTRQTFWHRIKHYAVLAGID 241

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +++ +
Sbjct: 242 TELLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHSE 297

Query: 317 THP 319
            HP
Sbjct: 298 HHP 300


>gi|315445045|ref|YP_004077924.1| tyrosine recombinase XerC subunit [Mycobacterium sp. Spyr1]
 gi|315263348|gb|ADU00090.1| tyrosine recombinase XerC subunit [Mycobacterium sp. Spyr1]
          Length = 300

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 141/296 (47%), Gaps = 10/296 (3%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           LE+ERG S+ T ++Y  D R    FL    +E+     +  L+   +R++++        
Sbjct: 12  LELERGRSEHTRRAYLGDLRSLFAFL----DERSPGTGLGGLTLPMLRSWLAAHAAADTA 67

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +L R  S +K+F  +  +R +  +     ++  K   +LP  L + QA   ++     
Sbjct: 68  RSTLARRTSSVKTFTAWAVRRGLIGDDPASRLQVPKARRTLPSVLRQDQARDALEAAE-S 126

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            + +   +  R+  ++ +LY  G+R+SE   L   ++   +  LR+ GKG+K R VP   
Sbjct: 127 GAQQGDPLAVRDRLVVEMLYATGIRVSELCGLDVDDVDTSRRLLRVLGKGNKQRTVPYGE 186

Query: 205 SVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
               A+  + ++  P     +    L  G RGK L+P   +  + Q    +G       H
Sbjct: 187 PAHAALTAWLHEGRPALATADSGPALLLGARGKRLDPRQARTVVHQTVSAVGGAPDIGPH 246

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V        +  ++DQ HP
Sbjct: 247 GLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVTVAR----LRAVHDQAHP 298


>gi|189459721|ref|ZP_03008506.1| hypothetical protein BACCOP_00349 [Bacteroides coprocola DSM 17136]
 gi|189433568|gb|EDV02553.1| hypothetical protein BACCOP_00349 [Bacteroides coprocola DSM 17136]
          Length = 312

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 145/287 (50%), Gaps = 20/287 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + Q L++E+ LS+ T+Q+Y  D  +     A+ T E I      Q++  ++  F +    
Sbjct: 14  YKQYLKLEKSLSENTVQAYLTDLDKLF---AYLTLENIDYT---QVTLQDLETFSAGLHD 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             I  RS  R LSGI+SF  +L       +     + + +    LP  L+ ++   L+ +
Sbjct: 68  IGIHPRSQARILSGIRSFYHFLVLDDYIQQDPTELLESPQIGKHLPDVLSVEEIDALIGS 127

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +   T         RN AIL  LY CGLR+SE  +L   ++  D+  ++++GKG K R+V
Sbjct: 128 IDRSTRE-----GQRNCAILETLYSCGLRVSELCNLKISDLYFDEGFIKVEGKGSKQRLV 182

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           P+ P     I  Y+     + N  +  P     +F    GK ++  +    I++L   +G
Sbjct: 183 PISPRAINEIRNYF----IERNQGLIKPEYEDFVFISRFGKNISRIMVFHIIKELASLIG 238

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           L    + HT RHSFATHLL  G +LR+IQ +LGH  + TT+IYT+++
Sbjct: 239 LKKKISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHID 285


>gi|165977242|ref|YP_001652835.1| site-specific tyrosine recombinase XerC [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|307257905|ref|ZP_07539660.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|165877343|gb|ABY70391.1| integrase/recombinase XerC [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|306863592|gb|EFM95520.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
          Length = 336

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 159/305 (52%), Gaps = 19/305 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L IE+  S+ TL +Y+   RQ L      ++  I+  T ++++   +R  I++   Q +G
Sbjct: 49  LRIEKQASQHTLSNYQ---RQLLAVSDMLSQAGIS--TWQEVNSATVRWIIAQSNKQGLG 103

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            +S+   L  ++ +  YL +++  + +  + ++  K S  LP+ ++ +QA  L    L  
Sbjct: 104 AKSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQAKQL----LTS 159

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            SHE    D R+ A++ L+Y  GLR+SE   L   ++      +R+ GKG+K RIVP+  
Sbjct: 160 DSHEPS--DLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGS 217

Query: 205 SVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              +A+  +  +   F    N    +F   RG  L+    Q  +++     GL      H
Sbjct: 218 KALEALNRWLAVRNQFKPQDN---AVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPH 274

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            LRHSFATH+L   GDLR++Q +LGH  L+TTQIYT+++ ++    + +IYD  HP   +
Sbjct: 275 KLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQH----LAKIYDAAHPRAKR 330

Query: 324 KDKKN 328
           K + +
Sbjct: 331 KKQDD 335


>gi|57651821|ref|YP_186127.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus COL]
 gi|87162376|ref|YP_493842.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194960|ref|YP_499760.1| site-specific recombinase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|151221374|ref|YP_001332196.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|161509418|ref|YP_001575077.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142042|ref|ZP_03566535.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253731871|ref|ZP_04866036.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733510|ref|ZP_04867675.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|258452551|ref|ZP_05700557.1| tyrosine recombinase xerC [Staphylococcus aureus A5948]
 gi|262048146|ref|ZP_06021033.1| hypothetical protein SAD30_1922 [Staphylococcus aureus D30]
 gi|262051314|ref|ZP_06023537.1| hypothetical protein SA930_2036 [Staphylococcus aureus 930918-3]
 gi|282920496|ref|ZP_06328217.1| tyrosine recombinase XerC [Staphylococcus aureus A9765]
 gi|284024245|ref|ZP_06378643.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 132]
 gi|294848247|ref|ZP_06788994.1| tyrosine recombinase XerC [Staphylococcus aureus A9754]
 gi|304381184|ref|ZP_07363837.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|81694641|sp|Q5HGI0|XERC_STAAC RecName: Full=Tyrosine recombinase xerC
 gi|123003475|sp|Q2FZ30|XERC_STAA8 RecName: Full=Tyrosine recombinase xerC
 gi|123486192|sp|Q2FHI6|XERC_STAA3 RecName: Full=Tyrosine recombinase xerC
 gi|172048862|sp|A6QGF2|XERC_STAAE RecName: Full=Tyrosine recombinase xerC
 gi|189030085|sp|A8Z3T2|XERC_STAAT RecName: Full=Tyrosine recombinase xerC
 gi|57286007|gb|AAW38101.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus COL]
 gi|87128350|gb|ABD22864.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202518|gb|ABD30328.1| site-specific recombinase, putative [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150374174|dbj|BAF67434.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|160368227|gb|ABX29198.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253724281|gb|EES93010.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728564|gb|EES97293.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257859769|gb|EEV82611.1| tyrosine recombinase xerC [Staphylococcus aureus A5948]
 gi|259160689|gb|EEW45710.1| hypothetical protein SA930_2036 [Staphylococcus aureus 930918-3]
 gi|259163712|gb|EEW48267.1| hypothetical protein SAD30_1922 [Staphylococcus aureus D30]
 gi|269940743|emb|CBI49125.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282594158|gb|EFB99145.1| tyrosine recombinase XerC [Staphylococcus aureus A9765]
 gi|294825047|gb|EFG41469.1| tyrosine recombinase XerC [Staphylococcus aureus A9754]
 gi|302751075|gb|ADL65252.1| site-specific recombinase XerC [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340167|gb|EFM06108.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|315198492|gb|EFU28821.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140931|gb|EFW32778.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144353|gb|EFW36119.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329313922|gb|AEB88335.1| Tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329727838|gb|EGG64289.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           21189]
          Length = 298

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 164/319 (51%), Gaps = 42/319 (13%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L++ER  S+ TL+SY+ D  QF  FL    +E + + T     Y + R ++S   +
Sbjct: 8   FLNTLKVERNFSEHTLKSYQDDLIQFNQFLE---QEHLELNT---FEYRDARNYLSYLYS 61

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNEKQALT 136
             +   S+ R +S +++F +Y     +T + NI+N    + + KK   LP+   E++   
Sbjct: 62  NHLKRTSVSRKISTLRTFYEYW----MTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEA 117

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L   V   TS      + R+  IL LLY  G+R+SE +++  Q+I    + + + GKG K
Sbjct: 118 LFKTVEEDTSK-----NLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSK 172

Query: 197 IRIVPLLPSVRKAILEYYDL------CPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQ 249
            R VP     R++I  Y +       C  D        L   ++G+ +   GV  RY+  
Sbjct: 173 ERFVPFGAYCRQSIENYLEHFKPIQSCNHDF-------LIVNMKGEAITERGV--RYVLN 223

Query: 250 --LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
             ++R  G+      H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++   
Sbjct: 224 DIVKRTAGVS-EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ-- 280

Query: 308 DWMMEIYDQTHPSITQKDK 326
             + ++Y   HP   ++++
Sbjct: 281 --LRKVYLNAHPRAKKENE 297


>gi|145224715|ref|YP_001135393.1| site-specific tyrosine recombinase XerC [Mycobacterium gilvum
           PYR-GCK]
 gi|189030078|sp|A4TEB1|XERC_MYCGI RecName: Full=Tyrosine recombinase xerC
 gi|145217201|gb|ABP46605.1| tyrosine recombinase XerC subunit [Mycobacterium gilvum PYR-GCK]
          Length = 300

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 141/296 (47%), Gaps = 10/296 (3%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           LE+ERG S+ T ++Y  D R    FL    +E+     +  L+   +R++++        
Sbjct: 12  LELERGRSEHTRRAYLGDLRSLFAFL----DERSPGTGLGGLTLPMLRSWLAAHAAAGTA 67

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +L R  S +K+F  +  +R +  +     ++  K   +LP  L + QA   ++     
Sbjct: 68  RSTLARRTSSVKTFTAWAVRRGLIGDDPASRLQVPKARRTLPSVLRQDQARDALEAAE-S 126

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            + +   +  R+  ++ +LY  G+R+SE   L   ++   +  LR+ GKG+K R VP   
Sbjct: 127 GAQQGDPLAVRDRLVVEMLYATGIRVSELCGLDVDDVDTSRRLLRVLGKGNKQRTVPYGE 186

Query: 205 SVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
               A+  + ++  P     +    L  G RGK L+P   +  + Q    +G       H
Sbjct: 187 PAHAALTAWLHEGRPALATADSGPALLLGARGKRLDPRQARTVVHQTVSAVGGAPDIGPH 246

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V        +  ++DQ HP
Sbjct: 247 GLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVTVAR----LRAVHDQAHP 298


>gi|319900751|ref|YP_004160479.1| tyrosine recombinase XerD subunit [Bacteroides helcogenes P 36-108]
 gi|319415782|gb|ADV42893.1| tyrosine recombinase XerD subunit [Bacteroides helcogenes P 36-108]
          Length = 317

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 144/282 (51%), Gaps = 13/282 (4%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           Q L +E+ LS  TL +Y+ D  + L FL    +EKI I  +   +  +++ F +      
Sbjct: 22  QYLRLEKSLSPNTLDAYQTDLEKLLRFLE---DEKIDILAV---TLDDLQRFTAGLHDIG 75

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           I  RS  R LSGIKSF  +L             +   K    LP  L  ++   ++  + 
Sbjct: 76  IHPRSQARILSGIKSFFHFLVLAGYLENDPSELLEGPKIGFKLPEVLTVEEIDRIIAAID 135

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
           ++T+        RN AIL  LY CGLR+SE  +L   ++  ++  ++++GKG K R+VP+
Sbjct: 136 MNTNE-----GQRNRAILETLYSCGLRVSELCNLKISDLYFNEGFIKVEGKGSKQRLVPI 190

Query: 203 LPSVRKAILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
                  I  + D     + +  + +  +F    G  ++  +   +I++L    G+  S 
Sbjct: 191 SHRAITEITNWLDDRKERWKIKKDFEDYVFLARWGNGISRIMIFHFIKELAEKAGITKSI 250

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++
Sbjct: 251 SPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHID 292


>gi|291615720|ref|YP_003518462.1| XerC [Pantoea ananatis LMG 20103]
 gi|291150750|gb|ADD75334.1| XerC [Pantoea ananatis LMG 20103]
          Length = 301

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 148/301 (49%), Gaps = 19/301 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L++L++ER LS LTL SY    RQ    +    E KI+  +  QL    +R+  ++ R
Sbjct: 11  GFLRHLKVERQLSPLTLSSY---ARQLAALVTIADEMKISAWS--QLDPAMVRSMAARSR 65

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +   SL   LS ++SFL +   R +   +    +   +    LP+ ++      L++
Sbjct: 66  RAGLAASSLALRLSALRSFLDWQVSRDMLAANPAKGIATPRNGRHLPKNIDVDDVNQLLE 125

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             L      T  +  R+  +L ++YG GLR+SE +++  +++  +   + + GKG K R 
Sbjct: 126 IDL------TDPLAIRDRTMLEVMYGGGLRLSELVNMDCRHVDLEAGEVWVLGKGSKERR 179

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+    R A+       P     N     LF   RG  ++    Q+   +     GL  
Sbjct: 180 VPI---GRTAVSWIQQWLPLRTAFNPGDDALFLSSRGSRISARNVQKRFAEWGIKQGLSS 236

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRHSFATHLL + GDLR++Q +LGH  LSTTQIYT+++ ++    +  +YD  H
Sbjct: 237 HIHPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LASVYDAAH 292

Query: 319 P 319
           P
Sbjct: 293 P 293


>gi|313884218|ref|ZP_07817984.1| tyrosine recombinase XerD [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620665|gb|EFR32088.1| tyrosine recombinase XerD [Eremococcus coleocola ACS-139-V-Col8]
          Length = 301

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 155/307 (50%), Gaps = 25/307 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L+ L I++GLS+ T+ +YE D ++F  F          +  + Q+    +R FI+   
Sbjct: 13  DFLRFLAIDKGLSQNTIANYELDLKKFFRFCQIQN-----MDLLSQIDTDLVRLFIASLN 67

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  +  R LS +++F  +L    + +++ +  + + KK+ +LP +L+  +    V+
Sbjct: 68  KAGYAASTAARILSSLRAFFHFLMVEGVVSKNPMALIESPKKARTLPHSLSMAE----VE 123

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            +L   + +TK+   R+ A+   LY  GLR+SE  +L+  ++  D   ++  GKG+K R+
Sbjct: 124 AILAAPNTDTKF-GIRDRAMFETLYATGLRVSELANLSLGDLHLDLRFIQTLGKGNKERM 182

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP------LFRGIRGKPLNPGVFQRYIRQLRRY 253
           VPL       I +Y D        +  LP      LF   RGK        + + +    
Sbjct: 183 VPLGEEAVFWIEKYLDQVR-----DGWLPKAGSDYLFLTQRGKAFTRQGIWKTLNKYVSL 237

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    + H LRHSFATH+L NG DLR +Q +LGH  +STTQIYT+++       + E+
Sbjct: 238 AGIQKKVSPHVLRHSFATHILENGADLRLVQELLGHENISTTQIYTHISHYR----LQEV 293

Query: 314 YDQTHPS 320
           Y ++ P 
Sbjct: 294 YRKSFPG 300


>gi|302879928|ref|YP_003848492.1| tyrosine recombinase XerD [Gallionella capsiferriformans ES-2]
 gi|302582717|gb|ADL56728.1| tyrosine recombinase XerD [Gallionella capsiferriformans ES-2]
          Length = 305

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 99/309 (32%), Positives = 156/309 (50%), Gaps = 19/309 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ELL E   +  +L +E GLS+ TL SY  D  +F  +L          Q + Q ++ +++
Sbjct: 5   ELLDE---FADSLWLEDGLSRNTLDSYRRDLNKFSDWL-----RNQRGQDLLQTTHADLQ 56

Query: 73  AFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
            +I+     QK    S  R+LS +K   +YL ++        L +   K   +LP++L E
Sbjct: 57  GYIADLFIVQKAKPSSAGRNLSSLKRLFRYLLRQGKIAIDPTLKIDTPKLPRNLPQSLTE 116

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           +     V+ +L     ET  +  R+  +  +LY  GLR+SE +SL    +  D   +R+ 
Sbjct: 117 QD----VEQLLAAPDIETS-LGLRDRTMFEVLYATGLRVSELVSLGIGQLDMDMGVVRVA 171

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           GKG+K R+VPL       +  Y D      L   I   LF   RG  +   +F   I++ 
Sbjct: 172 GKGNKERLVPLGEVALDWLQSYLDDSRGVLLAGRISDDLFVTARGSGMTRQMFWYLIKKH 231

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  GL    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +
Sbjct: 232 AKQGGLDKPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARER----L 287

Query: 311 MEIYDQTHP 319
            +++ + HP
Sbjct: 288 KQLHAKHHP 296


>gi|218961859|ref|YP_001741634.1| Tyrosine recombinase xerD [Candidatus Cloacamonas acidaminovorans]
 gi|167730516|emb|CAO81428.1| Tyrosine recombinase xerD [Candidatus Cloacamonas acidaminovorans]
          Length = 313

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 154/301 (51%), Gaps = 19/301 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +++ +L++ERG++K +++SY  D   FL+F           + I      +I  ++   +
Sbjct: 29  SFVYHLKVERGMAKNSIESYRRDIGDFLLFCP---------KEIGNYETDDITKYLLSLQ 79

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              + + S+ R    +  F  +LK   I T+ ++  +  +K    LP  L  ++   L++
Sbjct: 80  EIGLLNTSVARKRVALGQFFGFLKDNDIETKVDMDLVPRIKLGVQLPDVLTVEEMFQLLN 139

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           ++ + T      ++ RN  ++ LLY  G+RISE LS++  ++   +  + + GKG K R 
Sbjct: 140 SLPVKTP-----LEIRNKLMMELLYATGMRISELLSISLHDLNLTERVILVHGKGSKQRY 194

Query: 200 VPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP + ++ +   +Y     P  L L     LF   RG+ ++   F + +R+      +  
Sbjct: 195 VPYVDTLDELFAKYLKQSRPILLKLKQSELLFLNNRGERMSRMGFWKILRKAVLEANIKK 254

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             T HT RHSFATHLL  G +LR +Q++LGH  + TTQIYT+++ K     ++E Y + H
Sbjct: 255 EVTPHTFRHSFATHLLEGGVNLRIVQALLGHSSIDTTQIYTHIDMKR----LVETYKEYH 310

Query: 319 P 319
           P
Sbjct: 311 P 311


>gi|121533770|ref|ZP_01665597.1| tyrosine recombinase XerC [Thermosinus carboxydivorans Nor1]
 gi|121307761|gb|EAX48676.1| tyrosine recombinase XerC [Thermosinus carboxydivorans Nor1]
          Length = 302

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 152/312 (48%), Gaps = 25/312 (8%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +E + + + L +E+  S  T++SY  D   F  F   +   ++    I  +    IRA++
Sbjct: 6   QEIEQFFRYLRLEKNASPHTVKSYREDIEHFWEFALQHNGSEVLFAAITPML---IRAYL 62

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++ +       ++ R ++ ++SF ++L +  +   +    +   K    LP  L+E++  
Sbjct: 63  ARLKADDYARTTIARRIAALRSFYRFLCREGLVDTNPFKLVHTPKIEKKLPVFLDEREVA 122

Query: 136 TLV----DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            L+    D+VL            R++AIL LLY  G+R++E   L   ++      + + 
Sbjct: 123 ELLELPADDVL----------GRRDAAILELLYATGIRVAELTGLKTSDVDLVSRFVIVC 172

Query: 192 GKGDKIRIVPLLPSVRKAILEY-YDLCP---FDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           GKG K RIVP+  +   A+  Y  D  P             LF   +G PL     +R I
Sbjct: 173 GKGAKERIVPIGRTAAAALERYLADARPRLYSKWRKEQHQFLFINSKGGPLTDRSVRRII 232

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +    L +    + HT+RH+FATH+L+NG DLRS+Q +LGH  LSTTQ+YT+V  +   
Sbjct: 233 DKYIANLAVAKKVSPHTIRHTFATHMLNNGADLRSVQEMLGHVNLSTTQLYTHVTKER-- 290

Query: 308 DWMMEIYDQTHP 319
             +  +Y +THP
Sbjct: 291 --LKAVYRETHP 300


>gi|191174259|ref|ZP_03035768.1| tyrosine recombinase XerC [Escherichia coli F11]
 gi|300979372|ref|ZP_07174530.1| tyrosine recombinase XerC [Escherichia coli MS 200-1]
 gi|190905442|gb|EDV65072.1| tyrosine recombinase XerC [Escherichia coli F11]
 gi|300308044|gb|EFJ62564.1| tyrosine recombinase XerC [Escherichia coli MS 200-1]
 gi|324014716|gb|EGB83935.1| tyrosine recombinase XerC [Escherichia coli MS 60-1]
          Length = 298

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 154/307 (50%), Gaps = 17/307 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+   RQ    + F +E    +Q+ +Q   T +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIIHFASEN--GLQSWQQCDVTMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DMSRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHP 319
           +YD  HP
Sbjct: 286 VYDAAHP 292


>gi|21282864|ref|NP_645952.1| hypothetical protein MW1135 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486091|ref|YP_043312.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|297208102|ref|ZP_06924533.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300912183|ref|ZP_07129626.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|34222912|sp|Q8NWZ8|XERC_STAAW RecName: Full=Tyrosine recombinase xerC
 gi|81649416|sp|Q6G9W1|XERC_STAAS RecName: Full=Tyrosine recombinase xerC
 gi|21204303|dbj|BAB95000.1| xerC [Staphylococcus aureus subsp. aureus MW2]
 gi|49244534|emb|CAG42963.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296887345|gb|EFH26247.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300886429|gb|EFK81631.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           TCH70]
          Length = 298

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/322 (30%), Positives = 166/322 (51%), Gaps = 42/322 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +L  L++ER  S+ TL+SY+ D  QF  FL    +E + ++T     Y + R ++S 
Sbjct: 5   QEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLE---QEHLQLKT---FEYRDARNYLSY 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNEKQ 133
             +  +   S+ R +S +++F +Y     +T + NI+N    + + KK   LP+   E++
Sbjct: 59  LYSNHLKRTSVSRKISTLRTFYEYW----MTLDENIINPFVQLVHPKKEKYLPQFFYEEE 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L   V   TS        R+  IL LLY  G+R+SE +++  Q+I    + + + GK
Sbjct: 115 MEALFKTVEEDTSK-----SLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDL------CPFDLNLNIQLPLFRGIRGKPLNP-GVFQRY 246
           G K R VP     R++I  Y +       C  D        L   ++G+ +   GV  RY
Sbjct: 170 GSKERFVPFGAYCRQSIENYLEHFKPIQSCNHDF-------LIVNMKGEAITERGV--RY 220

Query: 247 IRQ--LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +    ++R  G+      H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++
Sbjct: 221 VLNDIVKRTAGVS-EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQ 279

Query: 305 NGGDWMMEIYDQTHPSITQKDK 326
                + ++Y   HP   ++++
Sbjct: 280 Q----LRKVYLNAHPRAKKENE 297


>gi|293391879|ref|ZP_06636213.1| tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290952413|gb|EFE02532.1| tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 297

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/301 (31%), Positives = 148/301 (49%), Gaps = 17/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L I +GLS  T+ SY  D    L  L  + E +    ++  L   +++ F+ +R  
Sbjct: 10  FLNELWIGKGLSPNTVASYRLD----LTALCDWLEARHL--SLLSLDAVDLQTFLGERVE 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     S  R LS I+   +YL + K  T+     + + K  N LP+ L E+Q   L++ 
Sbjct: 64  QDYKATSTARLLSAIRKLFQYLYQEKYRTDDPSAVLSSPKLPNRLPKYLTEQQVTDLLNV 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L        I+ R+ A+L LLY  GLR++E +SL   +I  +Q  +R+ GKG K RIV
Sbjct: 124 QSLEQP-----IELRDKAMLELLYATGLRVTELVSLNTNSINLNQGVVRVIGKGKKERIV 178

Query: 201 PLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+       + ++     P  L       LF   RG  +    F   I+       +   
Sbjct: 179 PMGEEATHWVKQFMLFARPMLLGGQSSDVLFPSRRGTQMTRQTFWHRIKHYAVLAEIDSE 238

Query: 260 T-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++++ H
Sbjct: 239 MLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER----LKRLHERYH 294

Query: 319 P 319
           P
Sbjct: 295 P 295


>gi|309751724|gb|ADO81708.1| Site-specific tyrosine recombinase XerC [Haemophilus influenzae
           R2866]
          Length = 295

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/300 (31%), Positives = 152/300 (50%), Gaps = 17/300 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L IER +S  T+ +Y+      +  LA     +  I +  Q++ + +R  +++ + Q + 
Sbjct: 12  LRIERQMSPHTITNYQHQLDATIKILA-----QQDIHSWTQVTPSVVRFILAESKKQGLK 66

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           ++SL   LS ++ FL +L ++     +    +   K+   LP+ ++ +Q    V  +L +
Sbjct: 67  EKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQ----VQQLLAN 122

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            S E   ID R+ AIL L+Y  GLR+SE   L   +I      +R+ GKG+K R+VP   
Sbjct: 123 DSKEP--IDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGR 180

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
               AI E+  +     N   +  LF    G  ++    Q+ +       GL      H 
Sbjct: 181 YASHAIQEWLKVRAL-FNPKGE-ALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHK 238

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    + E+YDQ HP   +K
Sbjct: 239 LRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEVYDQAHPRAKRK 294


>gi|306815150|ref|ZP_07449303.1| site-specific tyrosine recombinase XerC [Escherichia coli NC101]
 gi|305851519|gb|EFM51973.1| site-specific tyrosine recombinase XerC [Escherichia coli NC101]
          Length = 298

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 154/307 (50%), Gaps = 17/307 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+   RQ    + F +E    +Q+ +Q   T +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--GLQSWQQCDVTMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DMSRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHP 319
           +YD  HP
Sbjct: 286 VYDAAHP 292


>gi|212638838|ref|YP_002315358.1| site-specific tyrosine recombinase XerD [Anoxybacillus flavithermus
           WK1]
 gi|212560318|gb|ACJ33373.1| Site-specific recombinase XerD [Anoxybacillus flavithermus WK1]
          Length = 300

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 153/310 (49%), Gaps = 28/310 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY------TEIR 72
           ++++  L +ER L+  T+ SYE D ++++ +L          Q + QL +        I 
Sbjct: 8   KDFIHYLIVERNLAHNTIVSYERDLKKYVQYL----------QKVEQLCHWNDVTRFHIM 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F+   + +    +++ R L+ ++SF ++L + K   +   +++    ++  LPR L   
Sbjct: 58  QFLKFLKEKGSSPKTIARHLASVRSFHQFLLREKAVDQDPTVHI----ETPQLPRKLPNV 113

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
            ++  V+  LL    +      R+ A+L LLY  G+R+SE + L   ++      +R  G
Sbjct: 114 LSMAEVE-ALLEAPKQNTPFSIRDKAMLELLYATGIRVSELIQLNISDVHLTMGFIRCYG 172

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           KG K RIVP+     +A+  Y +    +L          LF    G+ L      + +++
Sbjct: 173 KGRKERIVPIGKMATEALKRYIEQGRPELLQRKKGTTDALFLNHHGERLTRQGCWKILKR 232

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           L +   +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V      D 
Sbjct: 233 LAQEANIQKQLTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKD- 291

Query: 310 MMEIYDQTHP 319
              +Y Q HP
Sbjct: 292 ---VYKQFHP 298


>gi|134093692|ref|YP_001098767.1| site-specific tyrosine recombinase [Herminiimonas arsenicoxydans]
 gi|133737595|emb|CAL60638.1| tyrosine recombinase XerD [Herminiimonas arsenicoxydans]
          Length = 309

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/279 (31%), Positives = 140/279 (50%), Gaps = 12/279 (4%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
            L +E GL+K +L++Y  D R F ++L     +    +T+      ++ A+   R  +  
Sbjct: 26  TLWLEDGLAKNSLEAYRRDLRLFAVWL-----QAERGKTLLAAHADDVNAYFFARH-EVT 79

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
              S  R L+ +K F +   ++   ++   L MR+ K+   +P+ L+E Q        LL
Sbjct: 80  KATSSNRRLAVLKRFYQLALRQNRISDDPCLKMRSAKQPLRIPKTLSEAQV-----EALL 134

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
                T  +  R+  +L L+Y  GLR++E + L    +  ++  LRI GKG K R+VP  
Sbjct: 135 AAPDVTTPLGLRDRTMLELMYASGLRVTELVLLKSIEVGMNEGVLRITGKGGKTRLVPFG 194

Query: 204 PSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
              R  I  Y  +  P  L+  I   LF   RG  +   +F   I++      +    + 
Sbjct: 195 EEARVWIERYLKEARPLILDGQIDDALFVTARGAAMTRQMFWTLIKKHAAAAEINAPLSP 254

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 255 HTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHV 293


>gi|90420213|ref|ZP_01228121.1| tyrosine recombinase XerD [Aurantimonas manganoxydans SI85-9A1]
 gi|90335547|gb|EAS49297.1| tyrosine recombinase XerD [Aurantimonas manganoxydans SI85-9A1]
          Length = 328

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 140/290 (48%), Gaps = 13/290 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ + +ERG +  T+ +Y  D      F+A      +T  T       +IRA++ + 
Sbjct: 24  ETFLEMMAVERGAADNTVAAYRRDLEDAAGFMAGQGGSLMTATT------EDIRAYVGRL 77

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +   + S  R LS ++ + ++L       +     +   ++   LP+ ++E +   L+
Sbjct: 78  AARGFAETSRSRRLSALRQYYRFLYVEGRRGDDPTGPIEGARRKRPLPKVMSEDEVDRLL 137

Query: 139 DNVLLHTSHETKWID-----ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           D          +        AR  A++ LLY  G+R+SE +SL    +   Q  + ++GK
Sbjct: 138 DRAAAEAVDPERSPAGLVRAARMHALVELLYATGMRVSELVSLPRAVLRGRQRMIVVRGK 197

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRR 252
           GDK R+VP+  + R A++ + +             LF  +     L    F R ++ L  
Sbjct: 198 GDKERMVPIGEAARDALIRFAEAMKLAGVSEEGRWLFPAVSETGHLTRQAFARDLKALAA 257

Query: 253 YLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             G+P    + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V
Sbjct: 258 REGIPAERISPHVLRHAFASHLLQNGADLRAVQELLGHADISTTQIYTHV 307


>gi|145629633|ref|ZP_01785430.1| tyrosine recombinase [Haemophilus influenzae 22.1-21]
 gi|144978144|gb|EDJ87917.1| tyrosine recombinase [Haemophilus influenzae 22.1-21]
          Length = 295

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 152/304 (50%), Gaps = 25/304 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L IER +S  T+ +Y+      +  LA     +  I +  Q++ + +R  +++ + Q + 
Sbjct: 12  LRIERQMSPHTITNYQHQLDATIKILA-----QQDIHSWTQVTPSVVRFILAESKKQGLK 66

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           ++SL   LS ++ FL +L ++     +    +   K+   LP+ ++ +Q    V  +L +
Sbjct: 67  EKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGKHLPKNMDGEQ----VQRLLAN 122

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            S E   ID R+ AIL L+Y  GLR+SE   L   +I      +R+ GKG+K R+VP   
Sbjct: 123 DSKEP--IDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGR 180

Query: 205 SVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
               AI E+  +     P D        LF    G  ++    Q+ +       GL    
Sbjct: 181 YASHAIQEWLKVRALFNPKDE------ALFVSQLGNRISHRAIQKRLETWGIRQGLNNHL 234

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
             H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    + E+YDQ HP 
Sbjct: 235 NPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEVYDQAHPR 290

Query: 321 ITQK 324
             +K
Sbjct: 291 AKRK 294


>gi|270295321|ref|ZP_06201522.1| tyrosine recombinase XerD [Bacteroides sp. D20]
 gi|270274568|gb|EFA20429.1| tyrosine recombinase XerD [Bacteroides sp. D20]
          Length = 317

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/294 (31%), Positives = 149/294 (50%), Gaps = 18/294 (6%)

Query: 16  KERQN-----WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           KE+Q      + Q L++E+ LS  T+ +Y+ D ++ L FL     E I I      +  +
Sbjct: 10  KEKQTLIIRKYHQYLKLEKALSPNTVDAYQTDLQKLLHFLE---GEGIAIL---DTTLDD 63

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           ++ F S      I  RS  R LSGIKSF  +L             +   K    LP  L 
Sbjct: 64  LQHFASGLHDIGIHPRSQARILSGIKSFFHFLVIADYLEGDPSELLEGPKIGFKLPEVLT 123

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            ++   ++  + L T+        RN AIL  LY CGLR+SE  +L   ++  D+  +++
Sbjct: 124 VEEIDRIISAIDLGTNE-----GQRNRAILETLYSCGLRVSELCNLKISDLYFDEGFIKV 178

Query: 191 QGKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           +GKG K R+VP+     K I  ++      + +  + +  +F    GK ++  +    I+
Sbjct: 179 EGKGSKQRLVPISSRAIKEIRNWFVDRNGGWKIKKDFEDYVFLARWGKNISRIMVFHLIK 238

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +L    G+  + + HT RHSFATHLL  G +LR+IQS+LGH  ++TT+IYT+++
Sbjct: 239 ELAEKAGITKNISPHTFRHSFATHLLEGGANLRAIQSMLGHESIATTEIYTHID 292


>gi|323167559|gb|EFZ53265.1| tyrosine recombinase XerC [Shigella sonnei 53G]
          Length = 298

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 154/307 (50%), Gaps = 17/307 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+   RQ    + F +E    +Q+ +Q   T +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--VLQSWQQCDVTMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHP 319
           +YD  HP
Sbjct: 286 VYDAAHP 292


>gi|261342297|ref|ZP_05970155.1| tyrosine recombinase XerD [Enterobacter cancerogenus ATCC 35316]
 gi|288315638|gb|EFC54576.1| tyrosine recombinase XerD [Enterobacter cancerogenus ATCC 35316]
          Length = 298

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 161/304 (52%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +E+ L++ TL +Y    R   + + + +  K++++T++   + +++A + +R
Sbjct: 9   EQFLDALWLEKNLAENTLSAYR---RDLTMLVEWLSRRKLSLETVQ---HDDLQALLGER 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   ++L + KI  +     + + K    LP+ L+E Q   L+
Sbjct: 63  VDGGYKATSSARLLSAMRRLFQHLFREKIRADDPSALLASPKLPQRLPKDLSEAQVERLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            +  +        ++ R+ A+L LLY  GLR+SE + LT  +I   Q  +R+ GKG+K R
Sbjct: 123 QSPAVDLP-----LELRDKAMLELLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL       +  Y +   P+ LN ++I + LF   R + +    F   I+      G+
Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYATLAGI 236

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292

Query: 316 QTHP 319
           Q HP
Sbjct: 293 QHHP 296


>gi|283470467|emb|CAQ49678.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 298

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/322 (30%), Positives = 164/322 (50%), Gaps = 42/322 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +L  L++ER  S+ TL+SY+ D  QF  FL    +E + + T     Y + R ++S 
Sbjct: 5   QEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLE---QEHLQLNT---FEYRDARNYLSY 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNEKQ 133
             +  +   S+ R +S +++F +Y     +T + NI+N    + + KK   LP+   E++
Sbjct: 59  LYSNHLKRTSVSRKISTLRTFYEYW----MTLDENIINPFVQLVHPKKEKYLPQFFYEEE 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                   L  T  E      R+  IL LLY  G+R+SE +++  Q+I    + + + GK
Sbjct: 115 M-----EALFKTVEEDASKSLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDL------CPFDLNLNIQLPLFRGIRGKPLNP-GVFQRY 246
           G K R VP     R++I  Y +       C  D        L   ++G+ +   GV  RY
Sbjct: 170 GSKERFVPFGAYCRQSIENYLEHFKPIQSCNHDF-------LIVNMKGEAITERGV--RY 220

Query: 247 IRQ--LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +    ++R  G+      H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++
Sbjct: 221 VLNNIVKRTAGVS-EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQ 279

Query: 305 NGGDWMMEIYDQTHPSITQKDK 326
                + ++Y   HP   ++++
Sbjct: 280 Q----LRKVYLNAHPRAKKENE 297


>gi|260775484|ref|ZP_05884381.1| site-specific recombinase XerD [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608665|gb|EEX34830.1| site-specific recombinase XerD [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 302

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 151/303 (49%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + +ERGLS+ TL SY  D  + L ++   TE    +  I   S + ++ + S  
Sbjct: 13  EQFLDAMWLERGLSENTLASYRNDLSKLLQWM---TENNYRLDFI---SLSGLQDYQSWL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R LS I+   +YL + K+  +     + + K    LP+ L+E+Q     
Sbjct: 67  MDQGYKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPKRLPKDLSEEQV---- 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL+       ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG K R
Sbjct: 123 -EALLNAPDPNDAMELRDKAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGGKER 181

Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+  +    I  +      +L        +F   R + +    F   I+      G+ 
Sbjct: 182 LVPMGENAVDWIETFIQQGRSELLGETTSDVVFPSKRARQMTRQTFWYRIKHYAVLAGID 241

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +++ +
Sbjct: 242 TEMLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHSE 297

Query: 317 THP 319
            HP
Sbjct: 298 HHP 300


>gi|302332858|gb|ADL23051.1| site-specific recombinase XerC [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 298

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/322 (30%), Positives = 165/322 (51%), Gaps = 42/322 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +L  L++ER  S+ TL+SY+ D  QF  FL    +E + + T     Y + R ++S 
Sbjct: 5   QEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLE---QEHLQLNT---FEYRDARNYLSY 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNEKQ 133
             +  +   S+ R +S +++F +Y     +T + NI+N    + + KK   LP+   E++
Sbjct: 59  LYSNHLKRTSVSRKISTLRTFYEYW----MTLDENIINPFVQLVHPKKEKYLPQFFYEEE 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L   V   TS        R+  IL LLY  G+R+SE +++  Q+I    + + + GK
Sbjct: 115 MEALFKTVEEDTSK-----SLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDL------CPFDLNLNIQLPLFRGIRGKPLNP-GVFQRY 246
           G K R VP     R++I  Y +       C  D        L   ++G+ +   GV  RY
Sbjct: 170 GSKERFVPFGAYCRQSIENYLEHFKPIQSCKHDF-------LIVNMKGEAITERGV--RY 220

Query: 247 IRQ--LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +    ++R  G+      H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++
Sbjct: 221 VLNDIVKRTAGVS-EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQ 279

Query: 305 NGGDWMMEIYDQTHPSITQKDK 326
                + ++Y   HP   ++++
Sbjct: 280 Q----LRKVYLNAHPRAKKENE 297


>gi|197118261|ref|YP_002138688.1| integrase/recombinase XerD [Geobacter bemidjiensis Bem]
 gi|197087621|gb|ACH38892.1| integrase/recombinase XerD [Geobacter bemidjiensis Bem]
          Length = 292

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 147/300 (49%), Gaps = 18/300 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +E+G +  T+ +Y  D  ++L+FL     + I          +++  F++K + 
Sbjct: 8   FLNYLLVEKGAAANTVSAYSRDLNRYLLFLGEREPDGIRP--------SDVTGFLAKLKG 59

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + I  RS  R+LS ++   ++L +   +  +    +   K    LP  L+ ++   L+ +
Sbjct: 60  EGIAPRSRARALSALRMLHRFLLREGYSELNPTAIIEAPKGVRKLPAVLSGREVEALLSS 119

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            L     +T   + R+ A+L LLY  GLR+SE + L    +      L   GKGDK R+V
Sbjct: 120 PL-----DTGAQELRDKAMLELLYATGLRVSELVGLKLSEVNLSAGYLMTIGKGDKERLV 174

Query: 201 PLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+  S   A   Y      +L        LF    G  ++   F   I++     G+  S
Sbjct: 175 PMGESACHATGVYLQQARGELLKEKASTLLFLSRLGGGMSRQAFWNIIKKRALQAGVRTS 234

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRHSFATHLL NG DLRS+Q +LGH  LS+TQIYT+V  +     M +++   HP
Sbjct: 235 ISPHTLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRER----MKKLHADFHP 290


>gi|188026224|ref|ZP_02961334.2| hypothetical protein PROSTU_03358 [Providencia stuartii ATCC 25827]
 gi|188022113|gb|EDU60153.1| hypothetical protein PROSTU_03358 [Providencia stuartii ATCC 25827]
          Length = 307

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 157/303 (51%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + +E+ L++ TL SY  D +    +L     +  ++Q+I      ++++F+++R
Sbjct: 18  EQFLDTIWLEQDLAENTLASYRLDLQLLDKWLEANQLDLESVQSI------DLQSFLAER 71

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +Y  + KI  +     +   K    LP+ L+E+Q    V
Sbjct: 72  IEGGYKAASSARLLSAMRRLFQYFYREKIRLDDPSAVIAAPKIPQRLPKDLSEQQ----V 127

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +++L   + E   ++ R+ A+L +LY CGLR+SE + LT  +I   Q  +R+ GKG+K R
Sbjct: 128 EDLLNAPATEDP-LELRDKAMLEVLYACGLRVSELVGLTFSDISLRQGVIRVVGKGNKER 186

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           ++PL       + +Y +   P  LN      LF   RG  +    F   I+       + 
Sbjct: 187 LIPLGEEAIYWVEKYLEEGRPDLLNGKASDVLFPSKRGTKMTRQTFWHRIKHYAVIANID 246

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  +++Q
Sbjct: 247 SEALSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRMLHEQ 302

Query: 317 THP 319
            HP
Sbjct: 303 HHP 305


>gi|262195487|ref|YP_003266696.1| integrase family protein [Haliangium ochraceum DSM 14365]
 gi|262078834|gb|ACY14803.1| integrase family protein [Haliangium ochraceum DSM 14365]
          Length = 395

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 109/359 (30%), Positives = 155/359 (43%), Gaps = 73/359 (20%)

Query: 19  QNWLQN----LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           Q WL      L  ERG S  T  +Y    R    F   Y E         Q++  +IRA 
Sbjct: 14  QRWLARFDDYLRTERGGSAHTRAAY---GRDLAEFGRVYEERSGAPPVPAQVAVLDIRAH 70

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++    ++    ++ R LS ++SF  +L +R     +    +R+ K+  +LPRAL+   A
Sbjct: 71  LAGL-YERNDAATMARKLSALRSFFAFLVQRGALDNNPARGVRSPKRRKALPRALDVDDA 129

Query: 135 LTLVD------------------------------------------NVLLHTSHETKWI 152
             L++                                          N    TS E   +
Sbjct: 130 FRLIEAPTRAPASGADAAAASPARNVGRSGGRSANRAGATGTASAGKNKRAKTSREP--L 187

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--------QGKGDKIRIVPLLP 204
             R+ AI  +LYG GLR+ E  +L     +DD    R+        +GKG K RIVPL  
Sbjct: 188 KLRDRAIAEVLYGSGLRVGECCALD----LDDIDRARLSSALVRVRRGKGGKERIVPLGR 243

Query: 205 SVRKAILEYYDLCPF--DLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
               A+  Y ++ P   D     + P  LF   RG  L     QR I +  + +G     
Sbjct: 244 QAVAALDAYLNVRPLLRDPKTGARDPAALFLSYRGTRLTTRSVQRMIGRNAQEVGA-YEA 302

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           T H LRHSFATHLL +G DLR+IQ +LGH  L++TQIYT V+     D +M +YD +HP
Sbjct: 303 TPHALRHSFATHLLDSGVDLRAIQELLGHASLASTQIYTKVSL----DHLMNVYDASHP 357


>gi|260173069|ref|ZP_05759481.1| integrase [Bacteroides sp. D2]
 gi|315921346|ref|ZP_07917586.1| integrase [Bacteroides sp. D2]
 gi|313695221|gb|EFS32056.1| integrase [Bacteroides sp. D2]
          Length = 319

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 149/286 (52%), Gaps = 13/286 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + Q L++E+ LS  TL +Y  D  + + FL   T E I +  +     ++++ F +  
Sbjct: 18  RKYQQYLKLEKSLSLNTLDAYLTDLDKLMSFL---TLEGINVLDV---CLSDLQRFAAGL 71

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               I  RS  R LSGIKSF ++L             +   K    LP  L  ++   ++
Sbjct: 72  HDIGIHPRSQARILSGIKSFFRFLILENYLEADPSELLEGPKIGFKLPEVLTVEEIDRII 131

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             V       +K    RN AIL  LY CGLR+SE ++L   ++  D+  ++++GKG K R
Sbjct: 132 SAV-----DRSKAEGQRNRAILETLYSCGLRVSELITLKLSDLYFDEGFIKVEGKGSKQR 186

Query: 199 IVPLLP-SVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGL 256
           +VP+ P ++ +  L   D    ++    +  +F   R GK L+  +    I++L +  G+
Sbjct: 187 LVPISPRAINEIKLYITDRNQIEVKKGHEDFVFVSQRRGKGLSRIMIFHMIKELAQKAGI 246

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++
Sbjct: 247 TKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHID 292


>gi|225013068|ref|ZP_03703483.1| integrase family protein [Flavobacteria bacterium MS024-2A]
 gi|225002796|gb|EEG40777.1| integrase family protein [Flavobacteria bacterium MS024-2A]
          Length = 289

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/300 (32%), Positives = 155/300 (51%), Gaps = 22/300 (7%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI- 83
           L IERGLS+ ++Q+Y  D      FL     EKI  ++    S   ++ FI +  T KI 
Sbjct: 3   LTIERGLSENSIQNYILDVHALQYFL---INEKIE-ESPTDCSLDSVQKFIYE--TAKIL 56

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
              +  R LSG++SF  YL      T +    +   K    LP  L+ ++   +++ + L
Sbjct: 57  SPHTQARRLSGLRSFFDYLIFESYRTSNPTDLIEAPKLGRKLPDVLSTEEIELMINQINL 116

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
             SH       RN AIL +LYG G+R+SE  +L+  N+  ++  +R+ GKG+K R+VP+ 
Sbjct: 117 --SHPQGQ---RNRAILEILYGSGIRVSELTNLSLSNLFFEEDMIRVHGKGNKQRLVPM- 170

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
             + K  LE Y +     N  I +     +F   RG  L   +    I+ L     +   
Sbjct: 171 GGISKEFLEEY-ITETRKNQKISVKDKDIVFLNRRGNGLTRQMIFTLIKDLAIKANVKKQ 229

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              HT RHSFATHLL NG DLR+IQ ++GH  ++TT+IYT++++++    +  + ++ HP
Sbjct: 230 VGPHTFRHSFATHLLENGADLRTIQILMGHESITTTEIYTHLDTQH----LRSVIERFHP 285


>gi|157372126|ref|YP_001480115.1| site-specific tyrosine recombinase XerD [Serratia proteamaculans
           568]
 gi|157323890|gb|ABV42987.1| tyrosine recombinase XerD [Serratia proteamaculans 568]
          Length = 299

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 154/303 (50%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER L++ TL SY  D    L  L  +  ++ T  ++ Q    +++AF++ R
Sbjct: 10  EQFLDALWLERNLAENTLASYRLD----LQALGAWLNQQNT--SLLQAQALDLQAFLADR 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL +  + ++     + + K    LP+ L+E Q     
Sbjct: 64  VEGGYKATSSARLLSAMRRLFQYLYRENMRSDDPTALLASPKLPQRLPKDLSEAQV---- 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            + LL      + ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K R
Sbjct: 120 -DALLKAPCVDQPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKER 178

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       I  Y +   P+ +N      LF   R + +    F   I+      G+ 
Sbjct: 179 LVPLGEEAVYWIENYLEHGRPWMVNGQALDVLFPSNRSQQMTRQTFWHRIKHYAILAGID 238

Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q
Sbjct: 239 SERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQQ 294

Query: 317 THP 319
            HP
Sbjct: 295 HHP 297


>gi|254229667|ref|ZP_04923077.1| tyrosine recombinase XerD [Vibrio sp. Ex25]
 gi|262395210|ref|YP_003287064.1| site-specific recombinase XerD [Vibrio sp. Ex25]
 gi|151937788|gb|EDN56636.1| tyrosine recombinase XerD [Vibrio sp. Ex25]
 gi|262338804|gb|ACY52599.1| site-specific recombinase XerD [Vibrio sp. Ex25]
          Length = 305

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 153/305 (50%), Gaps = 21/305 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA--FYTEEKITIQTIRQLSYTEIRAFIS 76
           + +L  + +ERGLS+ TL SY  D  + L ++    Y  + I++  +++  Y      + 
Sbjct: 16  EQFLDAMWMERGLSENTLASYRNDLMKLLTWMEKHRYRLDFISLSGLQE--YQSYLVDLD 73

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            ++T +       R LS I+   +YL + K+  +     + + K    LP+ ++E+Q   
Sbjct: 74  YKQTSR------ARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQV-- 125

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
              + LL        ++ R+ A+L LLY  GLR++E +SLT +NI   Q  +R+ GKG K
Sbjct: 126 ---DALLEAPDPNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGK 182

Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R+VP+  +    I  +     P  L       +F   R + +    F   I+      G
Sbjct: 183 ERLVPMGENAVDWIETFIQQGRPALLGDTSSDIVFPSKRARQMTRQTFWHRIKYYALIAG 242

Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           +     + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +I+
Sbjct: 243 IDTEQLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIH 298

Query: 315 DQTHP 319
            Q HP
Sbjct: 299 SQHHP 303


>gi|82750853|ref|YP_416594.1| integrase/recombinase [Staphylococcus aureus RF122]
 gi|123754641|sp|Q2YXL6|XERC_STAAB RecName: Full=Tyrosine recombinase xerC
 gi|82656384|emb|CAI80803.1| integrase/recombinase [Staphylococcus aureus RF122]
          Length = 298

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/322 (30%), Positives = 165/322 (51%), Gaps = 42/322 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +L  L++ER  S+ TL+SY+ D  QF  FL    +E + + T     Y + R ++S 
Sbjct: 5   QEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLE---QEHLQLNT---FEYRDARNYLSY 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNEKQ 133
             +  +   S+ R +S +++F +Y     +T + NI+N    + + KK   LP+   E++
Sbjct: 59  LYSNHLKRTSVSRKISTLRTFYEYW----MTLDENIINPFVQLVHPKKEKYLPQFFYEEE 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L   V   TS        R+  IL LLY  G+R+SE +++  Q+I    + + + GK
Sbjct: 115 MEALFKTVEEDTSK-----SLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVFGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDL------CPFDLNLNIQLPLFRGIRGKPLNP-GVFQRY 246
           G K R VP     R++I  Y +       C  D        L   ++G+ +   GV  RY
Sbjct: 170 GSKERFVPFGAYCRQSIENYLEHFKPIQSCNHDF-------LIVNMKGEAITERGV--RY 220

Query: 247 IRQ--LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +    ++R  G+      H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++
Sbjct: 221 VLNDIVKRTAGVS-EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQ 279

Query: 305 NGGDWMMEIYDQTHPSITQKDK 326
                + ++Y   HP   ++++
Sbjct: 280 Q----LRKVYLNAHPRAKKENE 297


>gi|148379825|ref|YP_001254366.1| tyrosine recombinase XerD [Clostridium botulinum A str. ATCC 3502]
 gi|153931147|ref|YP_001384123.1| tyrosine recombinase XerD [Clostridium botulinum A str. ATCC 19397]
 gi|153934877|ref|YP_001387663.1| tyrosine recombinase XerD [Clostridium botulinum A str. Hall]
 gi|148289309|emb|CAL83405.1| tyrosine recombinase [Clostridium botulinum A str. ATCC 3502]
 gi|152927191|gb|ABS32691.1| tyrosine recombinase XerD [Clostridium botulinum A str. ATCC 19397]
 gi|152930791|gb|ABS36290.1| tyrosine recombinase XerD [Clostridium botulinum A str. Hall]
          Length = 291

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 161/301 (53%), Gaps = 17/301 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N++++L+ ++ LSK TL++Y  D  +F  F+    E  +++ T+       I AF+   
Sbjct: 6   ENYIKDLQ-KKNLSKNTLEAYRRDVEKFSEFVRNREERILSVDTV------TIMAFVQYL 58

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + +     S+ R++  +++F KYL K+ + +E   L     K   ++P+ L+ ++    V
Sbjct: 59  QREGRATSSIVRNIVSVRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILSVEE----V 114

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D +L   +   K +  R+ A+L L+Y  G++I+E L+L   +I    + ++ +G   + R
Sbjct: 115 DKLLNSPNSSKKGL--RDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRER 172

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           I+P+     K +  Y ++ P     N+   LF  ++G  +    F + I+   +   +  
Sbjct: 173 IIPIGSYAIKCLKNYLEVRPAINVYNLDY-LFLNLKGTQMTRQGFWKIIKFYAKEASIDK 231

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
              ++TLRHSFA HLL NG D++S+Q +LGH  L+ TQIY++++ K+    + E+Y   H
Sbjct: 232 EIDSYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSK---IAEVYKNAH 288

Query: 319 P 319
           P
Sbjct: 289 P 289


>gi|50083543|ref|YP_045053.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1]
 gi|49529519|emb|CAG67231.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1]
          Length = 305

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/234 (35%), Positives = 127/234 (54%), Gaps = 9/234 (3%)

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           RS+ RSLS ++ F K+L+++KI  ++ +   ++ K   +LP+ L+E+         L+H 
Sbjct: 79  RSIARSLSALRQFFKFLREQKIRDDNPVALHKSPKLGRTLPKDLSEQDV-----EALIHA 133

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
                 +  R+ A+L +LY CGLR+SE L+L  + I   Q  LRI GKG+K R+VPL   
Sbjct: 134 PDTNTALGLRDRAMLEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERLVPLGQM 193

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
               I  Y       L  +    LF    G  ++   F   I++      +    + HTL
Sbjct: 194 ATDWIERYLVESRPQLYKSHTDYLFLTQHGGIMSRQNFWYAIKRYALQANILPEMSPHTL 253

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           RH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        M +++++ HP
Sbjct: 254 RHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQIR----MQQLHEKYHP 303


>gi|261868581|ref|YP_003256503.1| site-specific tyrosine recombinase XerD [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413913|gb|ACX83284.1| tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 297

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 151/301 (50%), Gaps = 17/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L I +GLS  T++SY  D    L  L  + E +    ++  L   +++AF+ +R  
Sbjct: 10  FLNELWIGKGLSPNTVESYRLD----LTALCDWLEARHL--SLLGLDAVDLQAFLGERVE 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     S  R LS ++   +YL + K  T+     + + K  + LP+ L E+Q   L++ 
Sbjct: 64  QGYKATSTARLLSAMRKLFQYLYQEKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDLLNV 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L        I+ R+ A+L LLY  GLR++E +SL   +I  +Q  +R+ GKG K RIV
Sbjct: 124 QSLEQP-----IELRDKAMLELLYATGLRVTELVSLNTDSINLNQGVVRVIGKGKKERIV 178

Query: 201 PLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+       + ++     P  L+      LF   RG  +    F   I+       +   
Sbjct: 179 PMGEEATHWVKQFMLFARPMLLDGQSSDVLFPSRRGTQMTRQTFWHRIKHYAVLAEIDSE 238

Query: 260 T-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++++ H
Sbjct: 239 MLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER----LKRLHERYH 294

Query: 319 P 319
           P
Sbjct: 295 P 295


>gi|284037325|ref|YP_003387255.1| tyrosine recombinase XerD [Spirosoma linguale DSM 74]
 gi|283816618|gb|ADB38456.1| tyrosine recombinase XerD [Spirosoma linguale DSM 74]
          Length = 305

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 151/303 (49%), Gaps = 16/303 (5%)

Query: 20  NWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           N  +N L++ER L++ ++++Y  D  +   ++      +  +Q   +    E+  F+   
Sbjct: 7   NAFKNYLKLERSLAENSVEAYLHDAEKLYEYILLTDPARTPMQVTEK----ELMNFLKYL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +   S  R LSGIKSF KYL    +        + + K    LP  L+  +   ++
Sbjct: 63  GELGLSAHSQARMLSGIKSFFKYLLLEGLIERDPTQLLESPKLGRKLPDTLSFPEIEDML 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             + L T   T     R+ A+L +LY  GLR+SE L+L   N    +  +R+ GKGDK+R
Sbjct: 123 AAIDLSTPGGT-----RDRAMLEVLYSSGLRVSELLNLRLTNCFFTEGFVRVLGKGDKVR 177

Query: 199 IVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VP+          Y +      D+    +  +F  +RGK L+       I++L   +G+
Sbjct: 178 LVPIGEDAMHYTRIYVEHVRQKLDVQKGDEDTIFLNLRGKQLSRISVFTTIKKLASEVGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HT RHSFATHL+  G DLR++Q +LGH  ++TT+IYT+++     D++ +   +
Sbjct: 238 KKTISPHTFRHSFATHLIEGGADLRAVQQMLGHESITTTEIYTHLDR----DYLQQTLKE 293

Query: 317 THP 319
            HP
Sbjct: 294 YHP 296


>gi|294674930|ref|YP_003575546.1| tyrosine recombinase XerD [Prevotella ruminicola 23]
 gi|294472077|gb|ADE81466.1| tyrosine recombinase XerD [Prevotella ruminicola 23]
          Length = 303

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 153/288 (53%), Gaps = 20/288 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +++ L+++R +S  TL +Y+ D R+ L +L     E++ I  +   +  ++  F +    
Sbjct: 11  YVRYLKLQRNMSGNTLDAYQRDLRKLLDYLE---HEQLAISDV---TLADLEHFSASLHD 64

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             I  RS  R LSGI+SF K+++      +     + + +  + LP  L  ++   L ++
Sbjct: 65  IGIHPRSQCRILSGIRSFFKFVQLDGYRDDDPTELLESPQIGDHLPEVLTTQEVDRLEES 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           + L     +KW   RN AI+ +L+ CGLR+SE ++L   ++  D+  +R+ GKG K R+V
Sbjct: 125 IDL-----SKWEGHRNRAIIEVLFSCGLRVSELVNLKLSDLYLDEEYVRVLGKGSKERLV 179

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           P+ P   + +  ++++     NL    P     +F   RG  L   +    I+   +   
Sbjct: 180 PISPKAIQELRFWFNV----RNLMKIKPGEEDYVFLNRRGAHLTRTMILIMIKAQAKEAR 235

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +  + + HTLRHSFAT LL  G DLR IQ++LGH  + TT+IYT++++
Sbjct: 236 IQKTISPHTLRHSFATALLEGGADLRFIQALLGHEDIGTTEIYTHIDT 283


>gi|168180442|ref|ZP_02615106.1| tyrosine recombinase XerD [Clostridium botulinum NCTC 2916]
 gi|168184537|ref|ZP_02619201.1| tyrosine recombinase XerD [Clostridium botulinum Bf]
 gi|237795269|ref|YP_002862821.1| tyrosine recombinase XerD [Clostridium botulinum Ba4 str. 657]
 gi|182668654|gb|EDT80632.1| tyrosine recombinase XerD [Clostridium botulinum NCTC 2916]
 gi|182672365|gb|EDT84326.1| tyrosine recombinase XerD [Clostridium botulinum Bf]
 gi|229260695|gb|ACQ51728.1| tyrosine recombinase XerD [Clostridium botulinum Ba4 str. 657]
          Length = 291

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 161/301 (53%), Gaps = 17/301 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N++++L+ ++ LSK TL++Y  D  +F  F+    E+ +++ T+       I AF+   
Sbjct: 6   ENYIKDLQ-KKNLSKNTLEAYRRDVEKFSEFVRNREEKILSVDTV------TIMAFVQYL 58

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + +     S+ R++  I++F KYL K+ + +E   L     K   ++P+ L+ ++    V
Sbjct: 59  QREGRATSSIVRNIVSIRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILSVEE----V 114

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D +L       K +  R+ A+L L+Y  G++I+E L+L   +I    + ++ +G   + R
Sbjct: 115 DKLLNSPDSSKKGL--RDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRER 172

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           I+P+     K +  Y ++ P     N+   LF  ++G  +    F + I+   +   +  
Sbjct: 173 IIPIGSYAIKCLKNYLEVRPAINVYNLDY-LFLNLKGTQMTRQGFWKIIKFYAKEAFIDK 231

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
              ++TLRHSFA HLL NG D++S+Q +LGH  L+ TQIY++++ K+    + E+Y   H
Sbjct: 232 EIDSYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSK---IAEVYKNAH 288

Query: 319 P 319
           P
Sbjct: 289 P 289


>gi|70726663|ref|YP_253577.1| hypothetical protein SH1662 [Staphylococcus haemolyticus JCSC1435]
 gi|82582336|sp|Q4L5V4|XERC_STAHJ RecName: Full=Tyrosine recombinase xerC
 gi|68447387|dbj|BAE04971.1| xerC [Staphylococcus haemolyticus JCSC1435]
          Length = 297

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 96/310 (30%), Positives = 164/310 (52%), Gaps = 24/310 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L++ER  S  TL+SY  D  QF  FL    +E I ++T     Y + R ++S   +
Sbjct: 8   FLNMLKVERNFSAHTLKSYHDDLVQFNHFLE---QELINLRT---FEYKDARNYLSYLYS 61

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q +   ++ R +S +++F ++   +  T  +  + + + KK N LP+   E++   L + 
Sbjct: 62  QNLKRTTVSRKISTLRTFYEFWMTQDETIINPFVQLVHPKKENYLPQFFYEEEMEALFET 121

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           V    + +TK    R+  IL LLY  G+R+SE +++  ++I      +++ GKG+K R V
Sbjct: 122 V----AKDTKK-GLRDRVILELLYATGIRVSELVNIQLKDIDMSLPGVKVLGKGNKERFV 176

Query: 201 PLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQ--LRRYLGL 256
           P     R++I +Y  +  P  +       L   + G P+   GV  RY+    ++R  G+
Sbjct: 177 PFGEFCRQSIEQYLREFKP--IQHTKHSFLLVNMNGAPITERGV--RYVLNDVVKRTAGV 232

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++     + ++Y  
Sbjct: 233 T-EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQ----LRKVYLN 287

Query: 317 THPSITQKDK 326
            HP   ++ K
Sbjct: 288 AHPRAKKESK 297


>gi|254362734|ref|ZP_04978818.1| site-specific recombinase XerC [Mannheimia haemolytica PHL213]
 gi|261491877|ref|ZP_05988456.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261494653|ref|ZP_05991133.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|153094359|gb|EDN75214.1| site-specific recombinase XerC [Mannheimia haemolytica PHL213]
 gi|261309618|gb|EEY10841.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261312532|gb|EEY13656.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 303

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 154/303 (50%), Gaps = 19/303 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L IE+ +S  TL +Y+   RQ +     +++    I+   ++  + +R  +S+   Q + 
Sbjct: 18  LRIEKQVSPHTLSNYQ---RQLMAVSELFSQ--AGIENWEEVESSSVRWMLSQSHKQGLS 72

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            +S+   L  ++ +  YL K    + +  L +++ K    LP+ ++ +Q    V  +L  
Sbjct: 73  AKSIGLRLVALRQWFVYLIKIGRMSANPTLGVKSPKVGKHLPKNIDAEQ----VGQLLAI 128

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            S E    D R+ A++ L+Y  GLR+SE   L   ++      +R+QGKG K RIVP+  
Sbjct: 129 ESDEPS--DIRDIAMMELMYSSGLRLSELQGLDLGDMDLSAREVRVQGKGSKERIVPIGS 186

Query: 205 SVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              KA+  + ++   F    N    +F   RG  L+    Q  +++     GL      H
Sbjct: 187 QALKALNRWLEMRLQFKPQDN---AVFLNKRGGRLSHRSIQLAMKKWGERQGLESHLHPH 243

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            LRHSFATH+L   GDLR++Q +LGH  LSTTQIYT+++ ++    + +IYD  HP   +
Sbjct: 244 KLRHSFATHMLEASGDLRAVQELLGHSSLSTTQIYTHLDFQH----LAKIYDSAHPRARR 299

Query: 324 KDK 326
           K +
Sbjct: 300 KQE 302


>gi|229544386|ref|ZP_04433444.1| tyrosine recombinase XerC [Bacillus coagulans 36D1]
 gi|229324871|gb|EEN90548.1| tyrosine recombinase XerC [Bacillus coagulans 36D1]
          Length = 300

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 152/313 (48%), Gaps = 38/313 (12%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++++ +++E+  S  T++ Y  D   F  FL         I ++ ++ Y   R +++   
Sbjct: 11  SFMEYMQVEKNYSAYTIKFYRLDLEDFFAFLT-----AQGIASLDEVGYPAGRLYLTMLH 65

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  ++ R +S I+SF K+L + +I  E+    +   K+   LP+   E++      
Sbjct: 66  EHGYSRATVARKISSIRSFFKFLMRERIVKENPFALLSQPKQHKRLPKFFYEEEM----- 120

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             L         +  RN A+L +LY  G+R+SE +++  Q+I  +  T+ ++GKG K RI
Sbjct: 121 EQLFAACEGDDALSRRNRALLEILYATGIRVSECVNIRLQDIDFEFETIHVKGKGKKERI 180

Query: 200 V-----------PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYI 247
           V             +   RK ++   +  P+         LF   RG  L + GV  RYI
Sbjct: 181 VLFGHFAGEAVSDYMAHARKTLMRGKEDHPY---------LFVNARGGALTDKGV--RYI 229

Query: 248 -RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
             ++ +   L      H LRH+FATHLL++G DLR++Q +LGH  LS+TQ+YT+V  ++ 
Sbjct: 230 LNEMIKKAALTGKIHPHMLRHTFATHLLNHGADLRTVQDLLGHESLSSTQVYTHVTKEH- 288

Query: 307 GDWMMEIYDQTHP 319
              + + Y   HP
Sbjct: 289 ---LRQTYMAYHP 298


>gi|332675806|gb|AEE72622.1| tyrosine recombinase XerD [Propionibacterium acnes 266]
          Length = 306

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 96/311 (30%), Positives = 159/311 (51%), Gaps = 27/311 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L++L +ERGLS  T+Q+Y  D  ++  +L         I ++ +++  ++  F  +R
Sbjct: 10  EDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLGSRG-----IGSLAEVTRVDVEEF--RR 62

Query: 79  RTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               IG    S+ R +  +++  ++              M    +S  LP+AL+  Q  +
Sbjct: 63  HLDHIGLAPASVTRCVVAVRNLHRFAVGSGQLQADVTAGMSPGTRSRRLPKALSMDQVES 122

Query: 137 LVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNI---MDDQS-TLRIQ 191
           L+       + +T  ++  R++A+L LLYG G R+SEA +L   +I   +DD    LR+ 
Sbjct: 123 LL------AAPDTSTVEGLRDAALLELLYGTGARVSEACALDVDDIRPVLDDPDLGLRLI 176

Query: 192 GKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           GKGDK RIVPL     KA+  +       +    N +  L    RG+ L+       IR+
Sbjct: 177 GKGDKERIVPLGSYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRR 236

Query: 250 LRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                GL +   + H+LRHS+ATHLL  G D+R +Q +LGH  ++TTQIYT V +    D
Sbjct: 237 AGEAAGLDVEHLSPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVTA----D 292

Query: 309 WMMEIYDQTHP 319
            + E+Y  +HP
Sbjct: 293 HLREVYRSSHP 303


>gi|49483415|ref|YP_040639.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425306|ref|ZP_05601731.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427967|ref|ZP_05604365.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430600|ref|ZP_05606982.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433360|ref|ZP_05609718.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436202|ref|ZP_05612249.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M876]
 gi|282903807|ref|ZP_06311695.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           C160]
 gi|282905570|ref|ZP_06313425.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908545|ref|ZP_06316375.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910824|ref|ZP_06318627.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914029|ref|ZP_06321816.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M899]
 gi|282918951|ref|ZP_06326686.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           C427]
 gi|282924074|ref|ZP_06331750.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           C101]
 gi|283957995|ref|ZP_06375446.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293501061|ref|ZP_06666912.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510023|ref|ZP_06668731.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M809]
 gi|293526609|ref|ZP_06671294.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M1015]
 gi|295427739|ref|ZP_06820371.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297591303|ref|ZP_06949941.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus MN8]
 gi|81651263|sp|Q6GHI3|XERC_STAAR RecName: Full=Tyrosine recombinase xerC
 gi|49241544|emb|CAG40230.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257271763|gb|EEV03901.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274808|gb|EEV06295.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278728|gb|EEV09347.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281453|gb|EEV11590.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284484|gb|EEV14604.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M876]
 gi|282314046|gb|EFB44438.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           C101]
 gi|282316761|gb|EFB47135.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           C427]
 gi|282322097|gb|EFB52421.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M899]
 gi|282325429|gb|EFB55738.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327607|gb|EFB57890.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282330862|gb|EFB60376.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595425|gb|EFC00389.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           C160]
 gi|283790144|gb|EFC28961.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920681|gb|EFD97744.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291096066|gb|EFE26327.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466967|gb|EFF09485.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M809]
 gi|295128097|gb|EFG57731.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297576189|gb|EFH94905.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus MN8]
 gi|312438369|gb|ADQ77440.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|315194139|gb|EFU24532.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|323441030|gb|EGA98737.1| integrase/recombinase [Staphylococcus aureus O11]
 gi|323443899|gb|EGB01510.1| integrase/recombinase [Staphylococcus aureus O46]
          Length = 298

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 98/322 (30%), Positives = 165/322 (51%), Gaps = 42/322 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +L  L++ER  S+ TL+SY+ D  QF  FL    +E + + T     Y + R ++S 
Sbjct: 5   QEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLE---QEHLQLNT---FEYRDARNYLSY 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNEKQ 133
             +  +   S+ R +S +++F +Y     +T + NI+N    + + KK   LP+   E++
Sbjct: 59  LYSNHLKRTSVSRKISTLRTFYEYW----MTLDENIINPFVQLVHPKKEKYLPQFFYEEE 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L   V   TS        R+  IL LLY  G+R+SE +++  Q+I    + + + GK
Sbjct: 115 MEALFKTVEEDTSK-----SLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDL------CPFDLNLNIQLPLFRGIRGKPLNP-GVFQRY 246
           G K R VP     R++I  Y +       C  D        L   ++G+ +   GV  RY
Sbjct: 170 GSKERFVPFGAYCRQSIENYLEHFKPIQSCNHDF-------LIVNMKGEAITERGV--RY 220

Query: 247 IRQ--LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +    ++R  G+      H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++
Sbjct: 221 VLNDIVKRTAGVS-EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQ 279

Query: 305 NGGDWMMEIYDQTHPSITQKDK 326
                + ++Y   HP   ++++
Sbjct: 280 Q----LRKVYLNAHPRAKKENE 297


>gi|227549015|ref|ZP_03979064.1| site-specific tyrosine recombinase XerC [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078925|gb|EEI16888.1| site-specific tyrosine recombinase XerC [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 298

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 155/314 (49%), Gaps = 24/314 (7%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + S +L +  +++ ++ E+  G S  T+++Y  D    L F   + E          L+ 
Sbjct: 4   VRSSQLGEAIEDFAEHAELVLGRSPATVKAYRSDLATLLPFATTFAE----------LTL 53

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +RA+++   ++ +   +L R  S +++F  +   +          + + K +  LP  
Sbjct: 54  PTLRAWLADAVSRGLARSTLARRTSAVRAFSTWACNQGYLQSDPAARLLSPKVNRHLPTV 113

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           +  + A  LV+  +    H  + +  R+ A+L LLY  G+R++E  +L   ++   +  +
Sbjct: 114 VEAEAAGELVEAEINDDDHPAETL--RDRAMLELLYATGMRVAELSALDIGDVDLGRGAV 171

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           ++ GKGDK RIVP   +   A+  +      +L  +    LF G RGK ++    QR +R
Sbjct: 172 KVTGKGDKQRIVPFGGAASDAVQRWVSAGRGELAGDTD-ALFVGSRGKRID----QRQVR 226

Query: 249 QLRRYLGLPLST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           ++     +       + H+LRHS ATH++  G DLR +Q +LGH  L TTQIYT+V+++ 
Sbjct: 227 RIVERAAVRTGAGEISPHSLRHSAATHMIEGGADLRVVQEMLGHSSLQTTQIYTHVSAQR 286

Query: 306 GGDWMMEIYDQTHP 319
               +  +YD+ HP
Sbjct: 287 ----LKNVYDRAHP 296


>gi|229918620|ref|YP_002887266.1| integrase family protein [Exiguobacterium sp. AT1b]
 gi|229470049|gb|ACQ71821.1| integrase family protein [Exiguobacterium sp. AT1b]
          Length = 293

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 155/306 (50%), Gaps = 17/306 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
            L++RQ++L+  +IER LS  T +SYE    Q+  +     ++    QT R+  Y     
Sbjct: 3   FLEDRQSFLRYCQIERRLSPHTKRSYEQTLDQYAAYCQSTHQDPYDAQTARRYLYVLYE- 61

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
                  +++   ++ + +S  K F K++  R+   E    ++ + KK  SLP      +
Sbjct: 62  -------KQLAASTVSQKVSCFKQFGKFMA-REQGGEPLFHDLTSPKKKQSLPTFAVPTE 113

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++     +  +  ++ AR+ AI+ +LYG G+R++E   +   +  +  S + + GK
Sbjct: 114 VEQLLEAA---SRQDDPFLQARDVAIIEVLYGTGIRVAELCGMNLSSFDEVLSFVHVMGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R VP+     +A+  Y +L    + L  +  LF   +G  +     +  +++LR+ 
Sbjct: 171 GKKERYVPIGQYAVQALQRYIELRK-GVGLPTETALFLSQKGNRMTTDQIRYVMKRLRKD 229

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    T H+LRHSFAT LL  G DLR++Q +LGH  LSTT  YT+V+++     +  I
Sbjct: 230 SGVHKPLTPHSLRHSFATDLLERGADLRAVQELLGHESLSTTGRYTHVSTER----LRSI 285

Query: 314 YDQTHP 319
           Y  THP
Sbjct: 286 YQATHP 291


>gi|91213336|ref|YP_543322.1| site-specific tyrosine recombinase XerC [Escherichia coli UTI89]
 gi|117626070|ref|YP_859393.1| site-specific tyrosine recombinase XerC [Escherichia coli APEC O1]
 gi|218560875|ref|YP_002393788.1| site-specific tyrosine recombinase XerC [Escherichia coli S88]
 gi|237702820|ref|ZP_04533301.1| tyrosine recombinase xerC [Escherichia sp. 3_2_53FAA]
 gi|331649636|ref|ZP_08350718.1| tyrosine recombinase XerC [Escherichia coli M605]
 gi|123084331|sp|Q1R4C3|XERC_ECOUT RecName: Full=Tyrosine recombinase xerC
 gi|166918885|sp|A1AHX9|XERC_ECOK1 RecName: Full=Tyrosine recombinase xerC
 gi|254799332|sp|B7MH75|XERC_ECO45 RecName: Full=Tyrosine recombinase xerC
 gi|91074910|gb|ABE09791.1| integrase/recombinase XerC [Escherichia coli UTI89]
 gi|115515194|gb|ABJ03269.1| site-specific tyrosine recombinase XerC [Escherichia coli APEC O1]
 gi|218367644|emb|CAR05429.1| site-specific tyrosine recombinase [Escherichia coli S88]
 gi|226902991|gb|EEH89250.1| tyrosine recombinase xerC [Escherichia sp. 3_2_53FAA]
 gi|281180860|dbj|BAI57190.1| recombinase [Escherichia coli SE15]
 gi|294489806|gb|ADE88562.1| tyrosine recombinase XerC [Escherichia coli IHE3034]
 gi|307628874|gb|ADN73178.1| site-specific tyrosine recombinase XerC [Escherichia coli UM146]
 gi|315284713|gb|EFU44158.1| tyrosine recombinase XerC [Escherichia coli MS 110-3]
 gi|323189763|gb|EFZ75042.1| tyrosine recombinase XerC [Escherichia coli RN587/1]
 gi|323949305|gb|EGB45195.1| tyrosine recombinase XerC [Escherichia coli H252]
 gi|323954018|gb|EGB49816.1| tyrosine recombinase XerC [Escherichia coli H263]
 gi|330908111|gb|EGH36630.1| tyrosine recombinase XerC [Escherichia coli AA86]
 gi|331041506|gb|EGI13654.1| tyrosine recombinase XerC [Escherichia coli M605]
          Length = 298

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 154/307 (50%), Gaps = 17/307 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+   RQ    + F +E    +Q+ +Q   T +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIIHFASEN--GLQSWQQCDVTMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHP 319
           +YD  HP
Sbjct: 286 VYDAAHP 292


>gi|149194285|ref|ZP_01871382.1| Phage integrase [Caminibacter mediatlanticus TB-2]
 gi|149135460|gb|EDM23939.1| Phage integrase [Caminibacter mediatlanticus TB-2]
          Length = 275

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 151/307 (49%), Gaps = 48/307 (15%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L I +G+SK T ++Y+ D  QF         EK   + I  +   ++  F+S  
Sbjct: 6   EAFLEYLLINKGVSKNTYEAYKRDLVQF---------EKFIEKDIIDVDSNDVIRFLS-- 54

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q    RSL R LS I SF  +  KR    E     ++  K   SLP+ L++++ LT +
Sbjct: 55  --QIDNKRSLNRKLSAINSFFDFAYKRNYVDEK--FKIKQAKLPKSLPKYLSKEEILTPI 110

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKI 197
                H    + W + R+ A++  LY  GLRISEAL++   +I D    +R++  KG+K 
Sbjct: 111 S----HIDSNSSWFELRDKALILFLYATGLRISEALNIKLSDIED--GWVRVEMAKGEKQ 164

Query: 198 RIVPLLPSVRKAILEYYDLCP-----FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           R+VP+     KAI EY    P       +N N      +  R    N  + ++Y      
Sbjct: 165 RLVPIADVALKAIEEYLAKRPCRSEYLFVNKNCN----KLSRISAFN--ITKKY------ 212

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                L+ + H LRHSFAT L+    DLR +Q +LGH  L+TTQIYT++  +N  D ++ 
Sbjct: 213 -----LAVSPHVLRHSFATSLVLGNADLRVVQELLGHASLNTTQIYTHIQKENLKDTIL- 266

Query: 313 IYDQTHP 319
              + HP
Sbjct: 267 ---KYHP 270


>gi|282879077|ref|ZP_06287837.1| putative tyrosine recombinase XerD [Prevotella buccalis ATCC 35310]
 gi|281298811|gb|EFA91220.1| putative tyrosine recombinase XerD [Prevotella buccalis ATCC 35310]
          Length = 321

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 152/286 (53%), Gaps = 12/286 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++ + L++ER  S  TL +Y+ D       L+F  +++I+   +R     +++ F  + 
Sbjct: 13  KSYTRYLKLERNYSPNTLIAYQND---LGWLLSFCEQQEISPLDVR---LEDLQHFAGQL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               IG  S  R LSG++SF ++L       +     + + +    LP  L+ ++   + 
Sbjct: 67  HEHDIGPTSQARILSGVRSFYRFLVLDGYIEQDPTELLESPRLGEHLPEVLSTEEVDMIE 126

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +++ L     +K    RN AI+ +L+ CGLR+SE ++L   N+  D+  +R+ GKG+K R
Sbjct: 127 NSIDL-----SKPEGQRNKAIIEVLFSCGLRVSELVNLQLSNLYLDEGFIRVTGKGNKER 181

Query: 199 IVPLLPSVRKAI-LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+ P   K + L + D     +    Q  +F   RG  L   +    +++  +  G+ 
Sbjct: 182 LVPISPKAIKELNLWFLDRNLMKIKPGEQDYVFLNRRGAHLTRTMILIMLKRQAQEAGIQ 241

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            + + HTLRHSFAT LL  G DLR+IQ +LGH  + TT+IYT++++
Sbjct: 242 KTISPHTLRHSFATELLKGGADLRAIQVMLGHESIGTTEIYTHIDT 287


>gi|332184625|gb|AEE26879.1| site-specific recombinase [Francisella cf. novicida 3523]
          Length = 292

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 162/314 (51%), Gaps = 29/314 (9%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+   N+L+NL   +  S+ T+ +Y+ D  Q          + +  + I  L+Y++I  +
Sbjct: 4   LEHINNFLENLLYLKNYSQETINNYQKDLLQL--------NQALNDKNITSLTYSDILIW 55

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I K   Q    ++L+R LS ++SF  +L   +I T++    ++  K S  LP+ +N  + 
Sbjct: 56  IKKLHAQGNSPKTLQRKLSSVRSFFNFLINSEIVTQNPASGIKAPKSSKRLPKVVNTDEL 115

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D   ++ S++   I+AR+ A   LLY CG+R+SE  S+  ++I   Q ++R+ GKG
Sbjct: 116 AYLLD---VNPSND---IEARDIACFDLLYSCGIRLSELSSIELKDISISQKSIRVTGKG 169

Query: 195 DKIRIVPLLPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL- 250
           +K RI    P     +   L+  D    + N      LF    GK L     Q+ +    
Sbjct: 170 NKQRITYFGPKTLSNLDRWLKIRDTLKPNCNY-----LFISRDGKHLTNRSIQKRLEIFS 224

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           ++Y    +    H LRHSFA+H+L +  DL +++ +LGH  +S+TQIYT++N +     +
Sbjct: 225 QKYASRHIH--PHMLRHSFASHMLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQ----L 278

Query: 311 MEIYDQTHPSITQK 324
             ++D+ HP   +K
Sbjct: 279 ANVFDKAHPRAKKK 292


>gi|83859702|ref|ZP_00953222.1| integrase/recombinase XerD [Oceanicaulis alexandrii HTCC2633]
 gi|83852061|gb|EAP89915.1| integrase/recombinase XerD [Oceanicaulis alexandrii HTCC2633]
          Length = 311

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 140/292 (47%), Gaps = 22/292 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  +  ERG ++ TL +Y  D       L  +     + QT       ++  F+S   +
Sbjct: 9   FLDMMAAERGAARNTLDAYRRDLEDAAQRLGAHGTGLESAQT------ADVERFLSDLAS 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +   +  R LS +K + ++L K  +  +     +   KK   LP+ L+E Q  TL D 
Sbjct: 63  DGLSPATAARRLSALKRYYRFLLKEGLRADDPAKTLSGPKKPRPLPKVLSEGQVETLFD- 121

Query: 141 VLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                +   +  D  R  A+L LLY  GLR+SE ++L        +  L + GKG K R+
Sbjct: 122 ----AADRIEGADGFRLRALLELLYAGGLRVSELVTLPLAAFARSERCLVVTGKGGKERL 177

Query: 200 VPLLPSVRKAILEY----YDLCPFDLNLNIQLP---LF--RGIRGKPLNPGVFQRYIRQL 250
           VPL  S  +A+  Y     D  P    +   +    LF  R  R   L    F + ++ L
Sbjct: 178 VPLTDSAIRAVEAYKAVRADHLPSRAAVTHAVASRYLFPSRTARDGHLTRERFAQLLKAL 237

Query: 251 RRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               GL P   + H +RH+FATHLL+NG DLRS+QS+LGH  +STT+IYT+V
Sbjct: 238 SLAAGLDPQQVSPHVMRHAFATHLLANGADLRSVQSLLGHADVSTTEIYTHV 289


>gi|46143623|ref|ZP_00134812.2| COG4973: Site-specific recombinase XerC [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|190151161|ref|YP_001969686.1| tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|303250058|ref|ZP_07336260.1| site-specific tyrosine recombinase XerC [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303253232|ref|ZP_07339381.1| site-specific tyrosine recombinase XerC [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|254799324|sp|B3GZ58|XERC_ACTP7 RecName: Full=Tyrosine recombinase xerC
 gi|189916292|gb|ACE62544.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|302647914|gb|EFL78121.1| site-specific tyrosine recombinase XerC [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302651121|gb|EFL81275.1| site-specific tyrosine recombinase XerC [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 306

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 159/305 (52%), Gaps = 19/305 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L IE+  S+ TL +Y+   RQ L      ++  I+  T ++++   +R  I++   Q +G
Sbjct: 19  LRIEKQASQHTLSNYQ---RQLLAVSDMLSQAGIS--TWQEVNSATVRWIIAQSNKQGLG 73

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            +S+   L  ++ +  YL +++  + +  + ++  K S  LP+ ++ +Q    +  +L  
Sbjct: 74  AKSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQ----IGQLLTS 129

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            SHE    D R+ A++ L+Y  GLR+SE   L   ++      +R+ GKG+K RIVP+  
Sbjct: 130 DSHEPS--DLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGS 187

Query: 205 SVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              +A+  +  +   F    N    +F   RG  L+    Q  +++     GL      H
Sbjct: 188 KALEALNRWLAVRNQFKPQDN---AVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPH 244

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            LRHSFATH+L   GDLR++Q +LGH  L+TTQIYT+++ ++    + +IYD  HP   +
Sbjct: 245 KLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQH----LAKIYDAAHPRAKR 300

Query: 324 KDKKN 328
           K + +
Sbjct: 301 KKQDD 305


>gi|301169393|emb|CBW28993.1| site-specific tyrosine recombinase [Haemophilus influenzae 10810]
          Length = 295

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 152/304 (50%), Gaps = 25/304 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L IER +S  T+ +Y+      +  LA     +  I +  Q++ + +R  +++ + Q + 
Sbjct: 12  LRIERQMSPHTITNYQHQLDATIKILA-----QQDIHSWTQVTPSVVRFILAESKKQGLK 66

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           ++SL   LS ++ FL +L ++     +    +   K+   LP+ ++ +Q    +  +L +
Sbjct: 67  EKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQ----IQQLLAN 122

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            S E   ID R+ AIL L+Y  GLR+SE   L   +I      +R+ GKG+K R+VP   
Sbjct: 123 DSKEP--IDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGR 180

Query: 205 SVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
               AI E+  +     P D        LF    G  ++    Q+ +       GL    
Sbjct: 181 YASHAIQEWLKVRALFNPKDE------ALFVSQLGNRISHRAIQKRLETWGIRQGLNSHL 234

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
             H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    + E+YDQ HP 
Sbjct: 235 NPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEVYDQAHPR 290

Query: 321 ITQK 324
             +K
Sbjct: 291 AKRK 294


>gi|114561634|ref|YP_749147.1| tyrosine recombinase XerC [Shewanella frigidimarina NCIMB 400]
 gi|114332927|gb|ABI70309.1| tyrosine recombinase XerC [Shewanella frigidimarina NCIMB 400]
          Length = 299

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 155/300 (51%), Gaps = 23/300 (7%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           Q+L  ER LS  T+++Y  + R+    LA  T+       + ++S  ++++ ++    + 
Sbjct: 12  QHLSSERQLSAYTVRNYLFELRRVEDMLAESTQ-------LIEVSRDQLQSVMATLHRKG 64

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV- 141
           +  RSL   LS +K F  +L +    T S    +   K++  LP+ ++       VD V 
Sbjct: 65  LSPRSLSLCLSALKQFFDFLLREGAVTVSPAQTLSAPKQNKPLPKNMD-------VDAVS 117

Query: 142 -LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL    +   +  R+ AI+ L Y  GLR++E  SL   +I  DQS +++ GKG K R+V
Sbjct: 118 HLLSIEGDDP-LSLRDKAIMELFYSSGLRLAELASLDCVDIKFDQSEVKVMGKGSKQRVV 176

Query: 201 PLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+      AI  + + C   L+ +     LF   +GK L+    Q  + +  +   + + 
Sbjct: 177 PIGQVALTAIKTWLN-CRNQLSCVEAGDALFVSSQGKRLSHRSIQARMAKWGQEQAMAVK 235

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRHSFATH+L +  DLR++Q +LGH  LSTTQIYT+++ ++    + ++YD  HP
Sbjct: 236 VHPHKLRHSFATHMLESSQDLRAVQELLGHANLSTTQIYTSLDFQH----LAKVYDNAHP 291


>gi|326799802|ref|YP_004317621.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21]
 gi|326550566|gb|ADZ78951.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21]
          Length = 293

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 99/307 (32%), Positives = 163/307 (53%), Gaps = 25/307 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + ++  L  E+  S+ TL++YE D R +L    F+  E+I+ +   ++ + ++R ++S  
Sbjct: 4   ERFMSFLRFEKHYSEHTLKAYEKDVRSYL---QFWVAEQISFE---EVGHKQLRYYLSIL 57

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +   S+ R LS ++++ K+L++  +   +  L ++ LKK   LP  + E +     
Sbjct: 58  MDSGLEASSINRILSSLRTYYKFLQRESLYGANPTLLVKALKKPKKLPVVIQEDKL---- 113

Query: 139 DNVLLHTSH--ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
            N LL   H  +  +   R+  I+ LL+G G+R++E + L  ++I     T+RI GK +K
Sbjct: 114 -NQLLDHDHIFQDNFEGQRDRLIIELLFGTGMRLTELIQLQEKDIDYYNQTIRILGKRNK 172

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG-VFQRYIRQLRRYLG 255
            RIVP+LP ++  I +Y  L   +   N  L L   I+GK   P  ++Q  IR    YL 
Sbjct: 173 ERIVPMLPHLKLLIEQYLKLKKIENLDNNSLTLVVTIKGKQAYPKLIYQVVIR----YLS 228

Query: 256 LPLS---TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           L  S    + H LRHSFAT LL+ G DL +I+ +LGH  L  TQ+YT+    N  + +  
Sbjct: 229 LITSQQKKSPHVLRHSFATALLNKGADLNAIKELLGHANLVATQVYTH----NSVERLKS 284

Query: 313 IYDQTHP 319
           IY Q HP
Sbjct: 285 IYKQAHP 291


>gi|300725867|ref|ZP_07059331.1| tyrosine recombinase XerD [Prevotella bryantii B14]
 gi|299776855|gb|EFI73401.1| tyrosine recombinase XerD [Prevotella bryantii B14]
          Length = 304

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/300 (31%), Positives = 146/300 (48%), Gaps = 24/300 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L++E   S  TL++Y  D R  L F   + +  I  +        ++  F +    + IG
Sbjct: 19  LKLECNYSANTLEAYRHDIRYLLEFFEEHQQNPIDAK------LEDLELFATSIHEKGIG 72

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            RS  R LSG++SF ++L+      +     + +      LP  L  ++   L  ++ L 
Sbjct: 73  ARSQARILSGVRSFYRFLQLEGYIKDDPTELLESPHLGEHLPTYLTTEEVDRLEASIDL- 131

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
               +KW   RN AI+ +L+ CGLR+SE ++L   N   D+  +R+ GKG K R+VP+  
Sbjct: 132 ----SKWEGQRNKAIIEVLFSCGLRVSELVNLKISNCFMDEKFVRVLGKGSKERLVPISE 187

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +  + +    +    D NL +  P     LF   RG  L   +    I++     G+   
Sbjct: 188 NAIREV----NYWLMDRNLMVIKPGEEDYLFLNRRGSHLTRTMILIMIKRQAVAAGITKI 243

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRHSFAT LL  G DLR+IQ +LGH  + TT+IYT++ +    D   EI +  HP
Sbjct: 244 ISPHTLRHSFATALLKGGADLRAIQVMLGHEDIGTTEIYTHMET---SDLKREILEH-HP 299


>gi|219683210|ref|YP_002469593.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|219620860|gb|ACL29017.1| probable integrase [Bifidobacterium animalis subsp. lactis AD011]
          Length = 344

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 147/317 (46%), Gaps = 32/317 (10%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE---EK 57
           MEG      +  ++L ER  +++ L   RGLS+ T  +Y  D  Q L  L  +     + 
Sbjct: 30  MEG-----AMDAQVLMER--FIEYLRSNRGLSEHTCMAYRGDILQCLEALDAFGRGNPDD 82

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           +T+  +R             R    +G  SL R    ++SF  +  +  +   +    +R
Sbjct: 83  VTLDDLR---------MWMGRMAHTVGKTSLARKTIAVRSFFTWAYEHGMLAHNPAHALR 133

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW---IDA--------RNSAILYLLYGC 166
             K   +LP  LNE QA  L+D V      +       DA        R+ A+L LLY  
Sbjct: 134 TPKIDRNLPAVLNEDQAERLMDTVDAEAGEKNAGKSKDDALNAHAKALRDCAMLELLYAT 193

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNI 225
           G+R+ E + L   +      T+R+ GKG+K R++P     ++A+  + +   P   N N 
Sbjct: 194 GMRVGELVGLDMGSFDWSNRTVRVLGKGNKTRVIPFGAPAQQAVEHWLHGGRPVFANGNS 253

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
              +F G+RG  ++  V ++ + +     G+P   + H LRHS ATH+L  G DLR +Q 
Sbjct: 254 GNAVFIGVRGCRIDQRVVRQVVHEQAEQAGVP-DISPHALRHSAATHMLDGGADLREVQE 312

Query: 286 ILGHFRLSTTQIYTNVN 302
           +LGH  L TTQ Y +V+
Sbjct: 313 MLGHSSLQTTQRYAHVS 329


>gi|297626642|ref|YP_003688405.1| integrase/recombinase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296922407|emb|CBL56979.1| Integrase/recombinase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 308

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 146/301 (48%), Gaps = 22/301 (7%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L ++R  S  T ++Y  D R+  +FL     +   +     +  T++R +++ ++  +  
Sbjct: 22  LRLQRRRSANTERAYLTDLRELALFL-----QGRGVHDPDHVRLTDLRRWLASQQASEA- 75

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             ++ R     + F  + ++           +R+ K    LP+ L + +   L+D     
Sbjct: 76  PATVARRAGTARVFFGWARETGRLGTDPAAGLRSPKLGRRLPQTLTQTEVRELMDAAAAA 135

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL-L 203
            +        R+ AIL  LYG GLR+SE   L   ++ + +  +R+ GKGDK RIVPL L
Sbjct: 136 AAEAGGVRGLRDVAILETLYGSGLRVSELCGLDVGDLDEARGLVRVIGKGDKERIVPLGL 195

Query: 204 PSVR-----KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           P +R     +A+ + + + P   N      LF G RG  +N  V +R + +  R +    
Sbjct: 196 PGLRAIDAWRAVRDQW-VAPASANA-----LFLGTRGGRINQRVVRRVVHESMRAVPEAP 249

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRH+ ATHLL  G DLRS+Q +LGH  LSTTQIYT+V+ +     +   Y+Q  
Sbjct: 250 DIGPHGLRHAMATHLLEGGADLRSVQEMLGHASLSTTQIYTHVSDER----VRAAYEQAF 305

Query: 319 P 319
           P
Sbjct: 306 P 306


>gi|37197590|dbj|BAC93429.1| site-specific recombinase XerD [Vibrio vulnificus YJ016]
          Length = 307

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 151/305 (49%), Gaps = 21/305 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA--FYTEEKITIQTIRQLSYTEIRAFIS 76
           + +L  + +ERGL++ TL SY  D  + L ++    Y  + I++  ++Q        + S
Sbjct: 18  EQFLDAMWMERGLAENTLASYRNDLMKLLQWMEANHYRLDFISLSGLQQ--------YQS 69

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               Q     S  R LS I+   +YL + K+  +     + + K    LP+ ++E+Q   
Sbjct: 70  YLVDQDYKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQV-- 127

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
              + LL        ++ R+ A+L LLY  GLR++E +SLT +NI   Q  +R+ GKG K
Sbjct: 128 ---DALLDAPDPNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGK 184

Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R+VP+  +    I  +     P  L       +F   R + +    F   I+      G
Sbjct: 185 ERLVPMGENAIDWIETFIKQGRPALLGETSSDVVFPSKRARQMTRQTFWHRIKFYAVIAG 244

Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           +     + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +I+
Sbjct: 245 IDTDHLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIH 300

Query: 315 DQTHP 319
            Q HP
Sbjct: 301 SQHHP 305


>gi|16131663|ref|NP_418256.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. MG1655]
 gi|26250551|ref|NP_756591.1| site-specific tyrosine recombinase XerC [Escherichia coli CFT073]
 gi|74314323|ref|YP_312742.1| site-specific tyrosine recombinase XerC [Shigella sonnei Ss046]
 gi|82546162|ref|YP_410109.1| site-specific tyrosine recombinase XerC [Shigella boydii Sb227]
 gi|89110208|ref|AP_003988.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. W3110]
 gi|157163288|ref|YP_001460606.1| site-specific tyrosine recombinase XerC [Escherichia coli HS]
 gi|170022166|ref|YP_001727120.1| site-specific tyrosine recombinase XerC [Escherichia coli ATCC
           8739]
 gi|170083293|ref|YP_001732613.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. DH10B]
 gi|170683603|ref|YP_001746128.1| site-specific tyrosine recombinase XerC [Escherichia coli SMS-3-5]
 gi|187731086|ref|YP_001882505.1| site-specific tyrosine recombinase XerC [Shigella boydii CDC
           3083-94]
 gi|188496206|ref|ZP_03003476.1| tyrosine recombinase XerC [Escherichia coli 53638]
 gi|191166069|ref|ZP_03027904.1| tyrosine recombinase XerC [Escherichia coli B7A]
 gi|193065702|ref|ZP_03046767.1| tyrosine recombinase XerC [Escherichia coli E22]
 gi|194429226|ref|ZP_03061754.1| tyrosine recombinase XerC [Escherichia coli B171]
 gi|209921289|ref|YP_002295373.1| site-specific tyrosine recombinase XerC [Escherichia coli SE11]
 gi|218550965|ref|YP_002384756.1| site-specific tyrosine recombinase XerC [Escherichia fergusonii
           ATCC 35469]
 gi|218692087|ref|YP_002400299.1| site-specific tyrosine recombinase XerC [Escherichia coli ED1a]
 gi|218697529|ref|YP_002405196.1| site-specific tyrosine recombinase XerC [Escherichia coli 55989]
 gi|218701275|ref|YP_002408904.1| site-specific tyrosine recombinase XerC [Escherichia coli IAI39]
 gi|218707445|ref|YP_002414964.1| site-specific tyrosine recombinase XerC [Escherichia coli UMN026]
 gi|227888604|ref|ZP_04006409.1| site-specific tyrosine recombinase [Escherichia coli 83972]
 gi|238902887|ref|YP_002928683.1| site-specific tyrosine recombinase [Escherichia coli BW2952]
 gi|254039023|ref|ZP_04873074.1| tyrosine recombinase xerC [Escherichia sp. 1_1_43]
 gi|256021445|ref|ZP_05435310.1| site-specific tyrosine recombinase XerC [Shigella sp. D9]
 gi|256026158|ref|ZP_05440023.1| site-specific tyrosine recombinase XerC [Escherichia sp. 4_1_40B]
 gi|260846413|ref|YP_003224191.1| site-specific tyrosine recombinase XerC [Escherichia coli O103:H2
           str. 12009]
 gi|260857783|ref|YP_003231674.1| site-specific tyrosine recombinase XerC [Escherichia coli O26:H11
           str. 11368]
 gi|260870536|ref|YP_003236938.1| site-specific tyrosine recombinase XerC [Escherichia coli O111:H-
           str. 11128]
 gi|293407438|ref|ZP_06651358.1| xerC [Escherichia coli FVEC1412]
 gi|293413253|ref|ZP_06655915.1| tyrosine recombinase XerC [Escherichia coli B354]
 gi|293468129|ref|ZP_06664541.1| tyrosine recombinase XerC [Escherichia coli B088]
 gi|298383178|ref|ZP_06992772.1| tyrosine recombinase xerC [Escherichia coli FVEC1302]
 gi|300818718|ref|ZP_07098925.1| tyrosine recombinase XerC [Escherichia coli MS 107-1]
 gi|300823347|ref|ZP_07103478.1| tyrosine recombinase XerC [Escherichia coli MS 119-7]
 gi|300900639|ref|ZP_07118797.1| tyrosine recombinase XerC [Escherichia coli MS 198-1]
 gi|300939969|ref|ZP_07154597.1| tyrosine recombinase XerC [Escherichia coli MS 21-1]
 gi|300950424|ref|ZP_07164346.1| tyrosine recombinase XerC [Escherichia coli MS 116-1]
 gi|300955183|ref|ZP_07167580.1| tyrosine recombinase XerC [Escherichia coli MS 175-1]
 gi|300985705|ref|ZP_07177560.1| tyrosine recombinase XerC [Escherichia coli MS 45-1]
 gi|301025744|ref|ZP_07189259.1| tyrosine recombinase XerC [Escherichia coli MS 69-1]
 gi|301029028|ref|ZP_07192182.1| tyrosine recombinase XerC [Escherichia coli MS 196-1]
 gi|301047307|ref|ZP_07194393.1| tyrosine recombinase XerC [Escherichia coli MS 185-1]
 gi|301646121|ref|ZP_07246021.1| tyrosine recombinase XerC [Escherichia coli MS 146-1]
 gi|307140510|ref|ZP_07499866.1| site-specific tyrosine recombinase XerC [Escherichia coli H736]
 gi|307313615|ref|ZP_07593235.1| tyrosine recombinase XerC [Escherichia coli W]
 gi|331644544|ref|ZP_08345664.1| tyrosine recombinase XerC [Escherichia coli H736]
 gi|331660156|ref|ZP_08361092.1| tyrosine recombinase XerC [Escherichia coli TA206]
 gi|331670657|ref|ZP_08371494.1| tyrosine recombinase XerC [Escherichia coli TA271]
 gi|331679921|ref|ZP_08380584.1| tyrosine recombinase XerC [Escherichia coli H591]
 gi|331685531|ref|ZP_08386115.1| tyrosine recombinase XerC [Escherichia coli H299]
 gi|332282681|ref|ZP_08395094.1| tyrosine recombinase xerC [Shigella sp. D9]
 gi|67475542|sp|P0A8P6|XERC_ECOLI RecName: Full=Tyrosine recombinase xerC
 gi|67475545|sp|P0A8P7|XERC_ECOL6 RecName: Full=Tyrosine recombinase xerC
 gi|123728303|sp|Q31UH7|XERC_SHIBS RecName: Full=Tyrosine recombinase xerC
 gi|123732258|sp|Q3YVF5|XERC_SHISS RecName: Full=Tyrosine recombinase xerC
 gi|166918884|sp|A8A6R9|XERC_ECOHS RecName: Full=Tyrosine recombinase xerC
 gi|189030076|sp|B1IW93|XERC_ECOLC RecName: Full=Tyrosine recombinase xerC
 gi|254799333|sp|B7L968|XERC_ECO55 RecName: Full=Tyrosine recombinase xerC
 gi|254799335|sp|B7NTD1|XERC_ECO7I RecName: Full=Tyrosine recombinase xerC
 gi|254799336|sp|B7N2A1|XERC_ECO81 RecName: Full=Tyrosine recombinase xerC
 gi|254799338|sp|B1XAH7|XERC_ECODH RecName: Full=Tyrosine recombinase xerC
 gi|254799339|sp|B7NFB3|XERC_ECOLU RecName: Full=Tyrosine recombinase xerC
 gi|254799340|sp|B6I4F2|XERC_ECOSE RecName: Full=Tyrosine recombinase xerC
 gi|254799341|sp|B1LLY2|XERC_ECOSM RecName: Full=Tyrosine recombinase xerC
 gi|254799342|sp|B7LU45|XERC_ESCF3 RecName: Full=Tyrosine recombinase xerC
 gi|254799357|sp|B2TUW7|XERC_SHIB3 RecName: Full=Tyrosine recombinase xerC
 gi|259710430|sp|C4ZZ74|XERC_ECOBW RecName: Full=Tyrosine recombinase xerC
 gi|26110981|gb|AAN83165.1|AE016769_280 Integrase/recombinase xerC [Escherichia coli CFT073]
 gi|148270|gb|AAA24763.1| lambda-integrase [Escherichia coli]
 gi|1790244|gb|AAC76814.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. MG1655]
 gi|73857800|gb|AAZ90507.1| site-specific recombinase, acts on cer sequence of ColE1, effects
           chromosome segregation at cell division [Shigella sonnei
           Ss046]
 gi|81247573|gb|ABB68281.1| site-specific recombinase [Shigella boydii Sb227]
 gi|85676239|dbj|BAE77489.1| site-specific tyrosine recombinase [Escherichia coli str. K12
           substr. W3110]
 gi|157068968|gb|ABV08223.1| tyrosine recombinase XerC [Escherichia coli HS]
 gi|169757094|gb|ACA79793.1| tyrosine recombinase XerC [Escherichia coli ATCC 8739]
 gi|169891128|gb|ACB04835.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. DH10B]
 gi|170521321|gb|ACB19499.1| tyrosine recombinase XerC [Escherichia coli SMS-3-5]
 gi|187428078|gb|ACD07352.1| tyrosine recombinase XerC [Shigella boydii CDC 3083-94]
 gi|188491405|gb|EDU66508.1| tyrosine recombinase XerC [Escherichia coli 53638]
 gi|190903845|gb|EDV63559.1| tyrosine recombinase XerC [Escherichia coli B7A]
 gi|192926669|gb|EDV81298.1| tyrosine recombinase XerC [Escherichia coli E22]
 gi|194412738|gb|EDX29032.1| tyrosine recombinase XerC [Escherichia coli B171]
 gi|209914548|dbj|BAG79622.1| recombinase [Escherichia coli SE11]
 gi|218354261|emb|CAV00939.1| site-specific tyrosine recombinase [Escherichia coli 55989]
 gi|218358506|emb|CAQ91153.1| site-specific tyrosine recombinase [Escherichia fergusonii ATCC
           35469]
 gi|218371261|emb|CAR19095.1| site-specific tyrosine recombinase [Escherichia coli IAI39]
 gi|218429651|emb|CAR10472.1| site-specific tyrosine recombinase [Escherichia coli ED1a]
 gi|218434542|emb|CAR15469.1| site-specific tyrosine recombinase [Escherichia coli UMN026]
 gi|226838714|gb|EEH70742.1| tyrosine recombinase xerC [Escherichia sp. 1_1_43]
 gi|227834443|gb|EEJ44909.1| site-specific tyrosine recombinase [Escherichia coli 83972]
 gi|238863558|gb|ACR65556.1| site-specific tyrosine recombinase [Escherichia coli BW2952]
 gi|257756432|dbj|BAI27934.1| site-specific tyrosine recombinase XerC [Escherichia coli O26:H11
           str. 11368]
 gi|257761560|dbj|BAI33057.1| site-specific tyrosine recombinase XerC [Escherichia coli O103:H2
           str. 12009]
 gi|257766892|dbj|BAI38387.1| site-specific tyrosine recombinase XerC [Escherichia coli O111:H-
           str. 11128]
 gi|260451346|gb|ACX41768.1| tyrosine recombinase XerC [Escherichia coli DH1]
 gi|291321507|gb|EFE60945.1| tyrosine recombinase XerC [Escherichia coli B088]
 gi|291425549|gb|EFE98587.1| xerC [Escherichia coli FVEC1412]
 gi|291468201|gb|EFF10698.1| tyrosine recombinase XerC [Escherichia coli B354]
 gi|298276414|gb|EFI17933.1| tyrosine recombinase xerC [Escherichia coli FVEC1302]
 gi|299878022|gb|EFI86233.1| tyrosine recombinase XerC [Escherichia coli MS 196-1]
 gi|300300826|gb|EFJ57211.1| tyrosine recombinase XerC [Escherichia coli MS 185-1]
 gi|300317900|gb|EFJ67684.1| tyrosine recombinase XerC [Escherichia coli MS 175-1]
 gi|300355855|gb|EFJ71725.1| tyrosine recombinase XerC [Escherichia coli MS 198-1]
 gi|300395867|gb|EFJ79405.1| tyrosine recombinase XerC [Escherichia coli MS 69-1]
 gi|300407979|gb|EFJ91517.1| tyrosine recombinase XerC [Escherichia coli MS 45-1]
 gi|300450231|gb|EFK13851.1| tyrosine recombinase XerC [Escherichia coli MS 116-1]
 gi|300455173|gb|EFK18666.1| tyrosine recombinase XerC [Escherichia coli MS 21-1]
 gi|300524133|gb|EFK45202.1| tyrosine recombinase XerC [Escherichia coli MS 119-7]
 gi|300528684|gb|EFK49746.1| tyrosine recombinase XerC [Escherichia coli MS 107-1]
 gi|301075647|gb|EFK90453.1| tyrosine recombinase XerC [Escherichia coli MS 146-1]
 gi|306906596|gb|EFN37108.1| tyrosine recombinase XerC [Escherichia coli W]
 gi|307555937|gb|ADN48712.1| integrase/recombinase XerC [Escherichia coli ABU 83972]
 gi|309704246|emb|CBJ03594.1| tyrosine recombinase [Escherichia coli ETEC H10407]
 gi|315063103|gb|ADT77430.1| site-specific tyrosine recombinase [Escherichia coli W]
 gi|315138388|dbj|BAJ45547.1| xerC [Escherichia coli DH1]
 gi|315293146|gb|EFU52498.1| tyrosine recombinase XerC [Escherichia coli MS 153-1]
 gi|315296792|gb|EFU56084.1| tyrosine recombinase XerC [Escherichia coli MS 16-3]
 gi|320185472|gb|EFW60241.1| Tyrosine recombinase XerC [Shigella flexneri CDC 796-83]
 gi|320198482|gb|EFW73083.1| Tyrosine recombinase XerC [Escherichia coli EC4100B]
 gi|323155217|gb|EFZ41401.1| tyrosine recombinase XerC [Escherichia coli EPECa14]
 gi|323161125|gb|EFZ47043.1| tyrosine recombinase XerC [Escherichia coli E128010]
 gi|323173426|gb|EFZ59055.1| tyrosine recombinase XerC [Escherichia coli LT-68]
 gi|323177824|gb|EFZ63408.1| tyrosine recombinase XerC [Escherichia coli 1180]
 gi|323182583|gb|EFZ67987.1| tyrosine recombinase XerC [Escherichia coli 1357]
 gi|323380833|gb|ADX53101.1| tyrosine recombinase XerC [Escherichia coli KO11]
 gi|323934199|gb|EGB30630.1| tyrosine recombinase XerC [Escherichia coli E1520]
 gi|323938947|gb|EGB35166.1| tyrosine recombinase XerC [Escherichia coli E482]
 gi|323943787|gb|EGB39882.1| tyrosine recombinase XerC [Escherichia coli H120]
 gi|324016212|gb|EGB85431.1| tyrosine recombinase XerC [Escherichia coli MS 117-3]
 gi|324111036|gb|EGC05023.1| tyrosine recombinase XerC [Escherichia fergusonii B253]
 gi|324115726|gb|EGC09661.1| tyrosine recombinase XerC [Escherichia coli E1167]
 gi|331036216|gb|EGI08451.1| tyrosine recombinase XerC [Escherichia coli H736]
 gi|331052724|gb|EGI24759.1| tyrosine recombinase XerC [Escherichia coli TA206]
 gi|331062130|gb|EGI34052.1| tyrosine recombinase XerC [Escherichia coli TA271]
 gi|331072468|gb|EGI43800.1| tyrosine recombinase XerC [Escherichia coli H591]
 gi|331077232|gb|EGI48446.1| tyrosine recombinase XerC [Escherichia coli H299]
 gi|332089061|gb|EGI94172.1| tyrosine recombinase XerC [Shigella boydii 3594-74]
 gi|332105033|gb|EGJ08379.1| tyrosine recombinase xerC [Shigella sp. D9]
 gi|332345790|gb|AEE59124.1| tyrosine recombinase XerC [Escherichia coli UMNK88]
          Length = 298

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 154/307 (50%), Gaps = 17/307 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+   RQ    + F +E    +Q+ +Q   T +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--GLQSWQQCDVTMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHP 319
           +YD  HP
Sbjct: 286 VYDAAHP 292


>gi|229820647|ref|YP_002882173.1| tyrosine recombinase XerD [Beutenbergia cavernae DSM 12333]
 gi|229566560|gb|ACQ80411.1| tyrosine recombinase XerD [Beutenbergia cavernae DSM 12333]
          Length = 311

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 156/313 (49%), Gaps = 22/313 (7%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           ++ +++L +L +ERGLS  TL +Y  D  ++  +L      +++      +   ++ A++
Sbjct: 8   RDLEDYLAHLGVERGLSPHTLAAYRRDLSRYAAYLGALGRARLS-----DVRPADVDAYV 62

Query: 76  SKRRTQKIGDRSLKRSLSGIK-----SFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
              RT   G  +L  S +         + ++     I      +++R    +  LP+A+ 
Sbjct: 63  EALRTGSDGGSALSASSASRAVVAVRGWHRFAMLEGIAPSDPAVDVRPPSTTKRLPKAI- 121

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT--PQNIMDDQSTL 188
              A+  V+ +L+  S        R+ A+L LLYG G RI+EA SL     ++ DD  ++
Sbjct: 122 ---AVEDVERLLVAASAGDGPGPLRDRALLELLYGTGARITEATSLAVDDIDLDDDAGSV 178

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLP-LFRGIRGKPLNPGVFQRY 246
           R+ GKG + R+VPL    R A+  Y     P         P LF G+RG+PL+       
Sbjct: 179 RLFGKGRRERVVPLGRFARDAVDAYLVRARPVLAQAGTGTPALFLGMRGRPLSRQSAWAI 238

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           ++   R   L    + HTLRHS+ATHLL+ G D+R +Q +LGH  ++TTQ+YT V ++  
Sbjct: 239 LQSAARRADLEEHVSPHTLRHSYATHLLAGGADVRVVQELLGHASVTTTQLYTLVTAQT- 297

Query: 307 GDWMMEIYDQTHP 319
              + E+Y   HP
Sbjct: 298 ---LREVYAAAHP 307


>gi|225874533|ref|YP_002755992.1| putative tyrosine recombinase XerC [Acidobacterium capsulatum ATCC
           51196]
 gi|225793160|gb|ACO33250.1| putative tyrosine recombinase XerC [Acidobacterium capsulatum ATCC
           51196]
          Length = 310

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 100/307 (32%), Positives = 152/307 (49%), Gaps = 18/307 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRAFISK 77
           + +L  L  ERG S  TL++Y  + R F    A Y E  +     ++ + +T IRA++ +
Sbjct: 13  EAYLAALRNERGSSPHTLRAYTRELRDF----AAYAERLLGKDVGVKAMEHTHIRAYLGE 68

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + +   S  R+L+ I+S+ K+L +     +S    +   K    LPR    +    L
Sbjct: 69  LYERGLSKASAARALAAIRSWCKWLARHGELEQSPAALVATPKLPKHLPRVPTIEDMNRL 128

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           VD     +S E     AR+  IL LLYGCG+R +E + +  ++I      + ++GKG K 
Sbjct: 129 VDA----SSEEVAAWPARDRLILELLYGCGIRNAELVGINLEDIQWTNEAILVRGKGRKE 184

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKP-LNPGVFQRYIRQLRR 252
           R VP+  +  +A+  Y       L      +  L L   +RG+  L      R ++Q+  
Sbjct: 185 RYVPIGDAAAQALRAYLPERNQKLATAGKDSAALLLNARLRGQGRLTTRSVGRIVKQMAL 244

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GLP     HTLRH+F THLL  G DLR+IQ +LGH RLSTTQ YT +        +  
Sbjct: 245 AQGLPADVHPHTLRHAFGTHLLEEGADLRAIQELLGHERLSTTQRYTQLTVGQ----VEA 300

Query: 313 IYDQTHP 319
           +YD+THP
Sbjct: 301 VYDRTHP 307


>gi|297242743|ref|ZP_06926681.1| site-specific recombinase XerD [Gardnerella vaginalis AMD]
 gi|296888954|gb|EFH27688.1| site-specific recombinase XerD [Gardnerella vaginalis AMD]
          Length = 322

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 148/291 (50%), Gaps = 15/291 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +++  +   +GL + T ++Y  D  Q L +       +     I +L+  ++R++++   
Sbjct: 24  DYIDYVRANKGLGERTQKAYASDILQCLAWC-----NRHGFNNISELTTDDLRSWMADE- 77

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           ++     SL R +  ++ F  + +  +  + +    +   K  N LP  L+E QA +L++
Sbjct: 78  SRSHARSSLARKVVAVRGFFAWCQHVEYISSNPAEILMTPKIKNMLPSVLDEYQAESLMN 137

Query: 140 NV------LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           NV          +   K +  RN+AIL LLY  G+R+ E  SL  Q+I     T+++ GK
Sbjct: 138 NVDSKANVSSSCTKNQKAVGLRNAAILELLYATGIRVGELTSLNIQDINFSSHTIKVTGK 197

Query: 194 GDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G+K R+VP      KA+  +   D     L  +++   F G RGK ++  + +R +    
Sbjct: 198 GNKQRVVPFGVPAYKALSAWISKDGREILLRNSVEEAAFLGTRGKRIDQRLVRRIVHDEA 257

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +   +P   + H LRHS ATH+L+ G DLR +Q +LGH  L+TTQ YT+V+
Sbjct: 258 KSAHVP-DISPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTHVS 307


>gi|154488853|ref|ZP_02029702.1| hypothetical protein BIFADO_02161 [Bifidobacterium adolescentis
           L2-32]
 gi|154082990|gb|EDN82035.1| hypothetical protein BIFADO_02161 [Bifidobacterium adolescentis
           L2-32]
          Length = 308

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 148/291 (50%), Gaps = 24/291 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L+  RGLS  T ++Y  D  + L+ L      K     + +++  ++R +++K  ++   
Sbjct: 14  LKANRGLSANTRRAYRSDVEECLVAL-----RKQGCVDLNEVTIEDLRLWMAKS-SKNHA 67

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--- 141
             S+ R    ++ F  +     + + +   +++  K  ++LP  LNE QA  L+D V   
Sbjct: 68  RSSMARKTVAVRGFFAWAYDHDMASANPAASLQTPKIPDTLPAVLNETQAQQLMDRVDED 127

Query: 142 -LLHTSHET----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
            +   S E     + I  R++A+L LLY  G+R++E + L   ++     T+++ GKGDK
Sbjct: 128 GMEARSQEPNMKKQAIALRDAAMLELLYATGMRVAELVGLDVADVTFGNRTVKVTGKGDK 187

Query: 197 IRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            R++P      KA+ ++ +     LC  D++ +     F G +G  +   + ++ +    
Sbjct: 188 QRVMPFGAPADKALRDWLEHGRPVLCG-DMSDDA---FFLGSQGGRIGQRMVRKVVHDRA 243

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           R  G+P   + H LRHS ATH+L  G DLR +Q +LGH  L TTQ YT+V+
Sbjct: 244 RKAGVP-DISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVS 293


>gi|170769828|ref|ZP_02904281.1| tyrosine recombinase XerC [Escherichia albertii TW07627]
 gi|170121266|gb|EDS90197.1| tyrosine recombinase XerC [Escherichia albertii TW07627]
          Length = 298

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 154/307 (50%), Gaps = 17/307 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+   RQ    + F +E    +Q+ +Q     +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--GLQSWQQCDAAMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DINRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  ++DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWFDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHP 319
           +YD  HP
Sbjct: 286 VYDAAHP 292


>gi|157364345|ref|YP_001471112.1| phage integrase family protein [Thermotoga lettingae TMO]
 gi|259710440|sp|A8F7B4|XERC_THELT RecName: Full=Tyrosine recombinase xerC
 gi|157314949|gb|ABV34048.1| phage integrase family protein [Thermotoga lettingae TMO]
          Length = 286

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 145/296 (48%), Gaps = 26/296 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           QN+   L   R LS  T+ +Y  D +QFL FL    E  I ++ + +L   E    +SK+
Sbjct: 6   QNFSDYLMHVRRLSDHTVVAYVGDVKQFLCFL---IENDIELKDVSRLHIEEYIKKLSKQ 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +T K+   SL R +S ++SF  YL+   I  E+ +  +RN K    +P  L   +   L+
Sbjct: 63  KT-KLNSTSLARKISSLRSFFNYLQLTSIKDENPVEGIRNPKIRRRIPDFLLPSEIQKLL 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197
                    E    + R+  +L LLY CGLR+SE  +L  +++    + ++I  GKG K 
Sbjct: 122 ---------EFSMKNQRDYLMLSLLYFCGLRVSELCNLRVEDLSFSPAFVKITMGKGKKD 172

Query: 198 RIVPLLPSVRKAILEYYDLC---PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           RIVPL   + + +  Y   C   P D     Q+ +         +P    R +R+     
Sbjct: 173 RIVPLTSKLAEKLENYITSCGKSPEDYLFGSQIKI---------HPSTVFRIVRKYTMMC 223

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           G+      HTLRH+FATHLL  G ++R +Q +LGH  LSTT +Y +V  +   D +
Sbjct: 224 GIKKRIHPHTLRHTFATHLLQKGVNIRVVQDLLGHSNLSTTSVYLHVVDQEKFDAI 279


>gi|254472325|ref|ZP_05085725.1| tyrosine recombinase XerD [Pseudovibrio sp. JE062]
 gi|211958608|gb|EEA93808.1| tyrosine recombinase XerD [Pseudovibrio sp. JE062]
          Length = 295

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/285 (31%), Positives = 139/285 (48%), Gaps = 15/285 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +ER  +  TL+SY  D   F  FL     + + +Q       T++RA++S    +   
Sbjct: 2   LSVERVSAFNTLESYRTDLEDFDSFLTTQGVDLLAVQV------TDVRAYLSDLTDRGFA 55

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--- 141
             S  R LS ++ F ++     I  +     + + +K+ +LP  L+E++   L+      
Sbjct: 56  ASSQARRLSALRQFYQFCYAEDIRDDDPTRTVASPRKAATLPSVLSEEEVDRLIGKAEEL 115

Query: 142 --LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             + H S   +   AR   +L +LY  GLR+SE +SL     + D   + ++GKG K R 
Sbjct: 116 ANITHDSDAKQIRAARIYTLLEVLYATGLRVSELVSLPVSAAIRDSRLITVKGKGGKERA 175

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLF--RGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           VPL P  + A++EY  L          + LF   G  G       F R ++ L     + 
Sbjct: 176 VPLSPRAQSAMVEYVRLRAAVGAYADSVWLFPSHGESGH-FTRQAFGRDLKALALEADID 234

Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            +  + H LRH+FA+HLL NG DLR +Q +LGH  +STTQIYT+V
Sbjct: 235 RNKVSPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHV 279


>gi|157159369|ref|YP_001465295.1| site-specific tyrosine recombinase XerC [Escherichia coli E24377A]
 gi|218556374|ref|YP_002389288.1| site-specific tyrosine recombinase XerC [Escherichia coli IAI1]
 gi|300923315|ref|ZP_07139363.1| tyrosine recombinase XerC [Escherichia coli MS 182-1]
 gi|301328427|ref|ZP_07221508.1| tyrosine recombinase XerC [Escherichia coli MS 78-1]
 gi|166918883|sp|A7ZU16|XERC_ECO24 RecName: Full=Tyrosine recombinase xerC
 gi|254799337|sp|B7M613|XERC_ECO8A RecName: Full=Tyrosine recombinase xerC
 gi|157081399|gb|ABV21107.1| tyrosine recombinase XerC [Escherichia coli E24377A]
 gi|218363143|emb|CAR00784.1| site-specific tyrosine recombinase [Escherichia coli IAI1]
 gi|300420401|gb|EFK03712.1| tyrosine recombinase XerC [Escherichia coli MS 182-1]
 gi|300845137|gb|EFK72897.1| tyrosine recombinase XerC [Escherichia coli MS 78-1]
          Length = 298

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 154/307 (50%), Gaps = 17/307 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+   RQ    + F +E    +Q+ +Q   T +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--GLQSWQQCDVTVVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHP 319
           +YD  HP
Sbjct: 286 VYDAAHP 292


>gi|227823255|ref|YP_002827227.1| site-specific tyrosine recombinase XerD [Sinorhizobium fredii
           NGR234]
 gi|227342256|gb|ACP26474.1| tyrosine recombinase XerD [Sinorhizobium fredii NGR234]
          Length = 313

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 155/315 (49%), Gaps = 16/315 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ +  ERG +  TLQSYE D R  L FL      + +   +   +  +++ ++S  
Sbjct: 10  EAFLEMMSAERGAAINTLQSYERDLRDALAFL------RSSGARLNSATADDLKRYLSHL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S  R LS ++ F K+L    +  +     +   KK+ +LP+ L+      L+
Sbjct: 64  AGEGFKSSSQARRLSALRQFYKFLYAEGLRGDDPTGILDAPKKARALPKTLSIDDVTRLI 123

Query: 139 DNVLLHTSHETKWIDAR--NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
                  +   +   AR    A++ LLY  G+R+SE +SL    +  +   L I+GKG+K
Sbjct: 124 GQAEAEAAAGGEDAFARLRMHALIELLYATGMRVSELVSLPASVLAQNGRFLVIRGKGNK 183

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP--LNPGVFQRYIRQLRRYL 254
            R+VPL  +  +A+  Y D          + P      GK   L   VF R ++ L    
Sbjct: 184 ERLVPLSQAAIRAMRTYGDALR-RRAAEAESPWLFPSSGKSGHLPRQVFARDLKSLAARA 242

Query: 255 GLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           G+ ++  + H LRH+FA+HLL+NG DLR++Q +LGH  +STTQIYT+V  +     + E+
Sbjct: 243 GIRVAVISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEER----LHEL 298

Query: 314 YDQTHPSITQKDKKN 328
               HP   Q  K++
Sbjct: 299 VQNHHPLAKQAKKQD 313


>gi|330812552|ref|YP_004357014.1| Site-specific tyrosine recombinase XerC/Sss [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|34222931|sp|Q8VS06|XERC_PSEFL RecName: Full=Tyrosine recombinase xerC
 gi|1929097|emb|CAA72946.1| Sss/XerC protein [Pseudomonas fluorescens]
 gi|27652537|gb|AAO17715.1| site-specific recombinase [Pseudomonas fluorescens]
 gi|327380660|gb|AEA72010.1| Site-specific tyrosine recombinase XerC/Sss [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 299

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 149/306 (48%), Gaps = 21/306 (6%)

Query: 17  ERQ--NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ERQ   + ++L  ER +S  TL +Y  D  + L +      +K  I +   L    +R+ 
Sbjct: 2   ERQLDAYCEHLRSERQVSPHTLSAYRRDLEKVLGWC-----QKQNIGSWAALDIQRLRSL 56

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I++   Q    RSL R LS ++    YL +  +        +   K    LP+ L+  +A
Sbjct: 57  IARLHQQGQSSRSLARLLSAVRGLYHYLNREGLCDHDPATGLAPPKGERRLPKTLDTDRA 116

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           L L++  +     E  ++  R+ AIL L Y  GLR+SE   L    +      +++ GKG
Sbjct: 117 LQLLEGAV-----EDDFLARRDQAILELFYSSGLRLSELTGLNLDQLDLADGMVQVLGKG 171

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRY 253
            K R++P+    R+A+ ++  L    L       +F   +G+ L P   Q  ++    R 
Sbjct: 172 SKTRLLPVGRKAREALEQWLPLRA--LTNPADDAVFVSQQGRRLGPRAIQLRVKAAGERE 229

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           LG  L    H LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +
Sbjct: 230 LGQNLHP--HMLRHSFASHLLESSQDLRAVQELLGHSDIKTTQIYTHLDFQH----LATV 283

Query: 314 YDQTHP 319
           YD  HP
Sbjct: 284 YDSAHP 289


>gi|27363993|ref|NP_759521.1| site-specific tyrosine recombinase XerD [Vibrio vulnificus CMCP6]
 gi|161486657|ref|NP_933458.2| site-specific tyrosine recombinase XerD [Vibrio vulnificus YJ016]
 gi|320157372|ref|YP_004189751.1| tyrosine recombinase XerD [Vibrio vulnificus MO6-24/O]
 gi|34222790|sp|Q7ZAJ0|XERD_VIBVU RecName: Full=Tyrosine recombinase xerD
 gi|71153415|sp|Q7MNQ0|XERD_VIBVY RecName: Full=Tyrosine recombinase xerD
 gi|27360110|gb|AAO09048.1| tyrosine recombinase XerD [Vibrio vulnificus CMCP6]
 gi|319932684|gb|ADV87548.1| tyrosine recombinase XerD [Vibrio vulnificus MO6-24/O]
          Length = 305

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 151/305 (49%), Gaps = 21/305 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA--FYTEEKITIQTIRQLSYTEIRAFIS 76
           + +L  + +ERGL++ TL SY  D  + L ++    Y  + I++  ++Q        + S
Sbjct: 16  EQFLDAMWMERGLAENTLASYRNDLMKLLQWMEANHYRLDFISLSGLQQ--------YQS 67

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               Q     S  R LS I+   +YL + K+  +     + + K    LP+ ++E+Q   
Sbjct: 68  YLVDQDYKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQV-- 125

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
              + LL        ++ R+ A+L LLY  GLR++E +SLT +NI   Q  +R+ GKG K
Sbjct: 126 ---DALLDAPDPNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGK 182

Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R+VP+  +    I  +     P  L       +F   R + +    F   I+      G
Sbjct: 183 ERLVPMGENAIDWIETFIKQGRPALLGETSSDVVFPSKRARQMTRQTFWHRIKFYAVIAG 242

Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           +     + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +I+
Sbjct: 243 IDTDHLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIH 298

Query: 315 DQTHP 319
            Q HP
Sbjct: 299 SQHHP 303


>gi|116748125|ref|YP_844812.1| tyrosine recombinase XerD [Syntrophobacter fumaroxidans MPOB]
 gi|116697189|gb|ABK16377.1| tyrosine recombinase XerD subunit [Syntrophobacter fumaroxidans
           MPOB]
          Length = 294

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 95/300 (31%), Positives = 152/300 (50%), Gaps = 16/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L ++ +E+GLS  T+  Y  D ++ L +       K  + +   +S  +I +++    +
Sbjct: 8   FLNHITVEKGLSPNTVAGYGGDLQEMLGYFG-----KHGVSSWEAVSREDIVSYLESV-S 61

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            ++  RS  R L+ +++F KYL++    + S    +R  K +  LP+ L  ++    VD 
Sbjct: 62  GRLSHRSKARRLAALRAFFKYLERTGKMSGSPAALVRFPKFNPGLPKTLTGRE----VDA 117

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +L   +  T  +  R+ A+L LLY  GLR+SE   L    +  +   L  +GKGDK R V
Sbjct: 118 LLAAPAAGTP-LGQRDRAMLELLYATGLRVSELADLQLDQVHLEAGYLVARGKGDKERPV 176

Query: 201 PLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+     +A+  Y  D     L       +F   R   L      + I+Q     G+  +
Sbjct: 177 PMGEPAGEALQIYLRDGRRRLLKDGRSREVFLNRRAVKLTRQGIWKIIKQYALKSGIRQN 236

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T H LRHSFATHLL NG DLRS+Q++LGH  +STTQIYT+V  K     + E++ + HP
Sbjct: 237 LTPHVLRHSFATHLLENGADLRSLQAMLGHADISTTQIYTHVAKKR----LKEVHLKFHP 292


>gi|323974393|gb|EGB69521.1| tyrosine recombinase XerC [Escherichia coli TW10509]
          Length = 298

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 154/307 (50%), Gaps = 17/307 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+   RQ    + F +E    +Q+ +Q   T +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--GLQSWQQCDVTMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DINRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHP 319
           +YD  HP
Sbjct: 286 VYDAAHP 292


>gi|315186395|gb|EFU20155.1| integrase family protein [Spirochaeta thermophila DSM 6578]
          Length = 312

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 158/328 (48%), Gaps = 22/328 (6%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           MEG ++  +    L+     +L +L   RGLS+ T++SY  D  +   FL     EK+  
Sbjct: 3   MEGGSVSTLHQETLI---DRFLAHLSHMRGLSEATVRSYRNDLVKVGAFL-----EKLGT 54

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             +   +  +IR  +++    +    S+ R LS ++S+ ++L++  +  +S +  + ++K
Sbjct: 55  DLV-SATREDIRHCVAEYTLARQAPSSINRMLSSLRSWYRFLRREGVRIDSPMEGISSVK 113

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LP  L E +   L+D         + +   R+ A+L +LY  G R+ E +SLT   
Sbjct: 114 AGKRLPSFLFEDEVDRLLDI------EGSDFASLRDRALLEVLYSTGCRVQELVSLTISG 167

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF---DLNLNIQLPLFRGIRGKP 237
           +   +    ++GKG K R++ L    RKA+  Y  L       +    +  LF   +G P
Sbjct: 168 VQVSRGWCVVKGKGGKERLLFLGLGARKALAAYLPLRQALLERMGRREEGALFVNQKGSP 227

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L        I +  R  GL    + H  RHSFATH+LS G DLR +Q +LGH  LSTTQ+
Sbjct: 228 LTTRGVAYIIERRAREKGLEKRISPHVFRHSFATHVLSRGADLRVVQEMLGHASLSTTQV 287

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           YT+++       +  +Y + HP   + D
Sbjct: 288 YTHLSLPA----LKRMYRKAHPHAERSD 311


>gi|327404137|ref|YP_004344975.1| Tyrosine recombinase xerC [Fluviicola taffensis DSM 16823]
 gi|327319645|gb|AEA44137.1| Tyrosine recombinase xerC [Fluviicola taffensis DSM 16823]
          Length = 293

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 159/305 (52%), Gaps = 23/305 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           + +++  LE+E+  SK T+ +YE D  QF+ F    +E K +++  R+++Y  +RA++  
Sbjct: 4   KDSFIHYLEVEKRYSKHTILAYEEDLNQFVSF----SELKESVEW-REVNYQLVRAWVVG 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                  +R++ R +S ++SF K+L       E+ +L +R  K    LP+ + +    T 
Sbjct: 59  LLESGQSNRTVSRKISCLRSFFKWLINEGKIGENPMLRIRGPKVEKRLPQFVKQ----TE 114

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D   +     + +   R+  +  L Y  G+R+SE + L  +++     ++++ GK +K 
Sbjct: 115 IDGARIEGLFSSNFEGVRDRLMFELFYQTGIRLSELIELKNKDV--SSVSIKVLGKRNKE 172

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RI+P+   + + IL Y  + P     + Q+ LF    G+ L+P       R++  YLG  
Sbjct: 173 RIIPIGQELHEIILAYQSIKPG--GPDSQILLFVKKDGRKLSPKFV---YRKINTYLGSV 227

Query: 258 LST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            +    + H LRH+FATH+L+NG  L +++ +LGH  LS TQ+YT+    N    +  IY
Sbjct: 228 TNVQKKSPHILRHTFATHMLNNGAGLETLKELLGHANLSATQVYTH----NSFAQINSIY 283

Query: 315 DQTHP 319
              HP
Sbjct: 284 SHAHP 288


>gi|307262299|ref|ZP_07543948.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|306868062|gb|EFM99889.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
          Length = 336

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 159/305 (52%), Gaps = 19/305 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L IE+  S+ TL +Y+   RQ L      ++  I+  T ++++   +R  I++   Q +G
Sbjct: 49  LRIEKQASQHTLSNYQ---RQLLAVSDMLSQAGIS--TWQEVNSATVRWIIAQSNKQGLG 103

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            +S+   L  ++ +  YL +++  + +  + ++  K S  LP+ ++ +Q    +  +L  
Sbjct: 104 AKSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQ----IGQLLTS 159

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            SHE    D R+ A++ L+Y  GLR+SE   L   ++      +R+ GKG+K RIVP+  
Sbjct: 160 DSHEPS--DLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGS 217

Query: 205 SVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              +A+  +  +   F    N    +F   RG  L+    Q  +++     GL      H
Sbjct: 218 KALEALNRWLAVRNQFKPQDN---AVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPH 274

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            LRHSFATH+L   GDLR++Q +LGH  L+TTQIYT+++ ++    + +IYD  HP   +
Sbjct: 275 KLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQH----LAKIYDAAHPRAKR 330

Query: 324 KDKKN 328
           K + +
Sbjct: 331 KKQDD 335


>gi|220912958|ref|YP_002488267.1| integrase [Arthrobacter chlorophenolicus A6]
 gi|219859836|gb|ACL40178.1| integrase family protein [Arthrobacter chlorophenolicus A6]
          Length = 295

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 144/302 (47%), Gaps = 11/302 (3%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +   L  ER LS  T ++Y  D    L F A  +E    ++    L    +R ++  +
Sbjct: 2   EGFAAYLSGERALSPHTRRAYLGDLESLLAFAA--SEGAAELE---DLELGTLRRWLGAQ 56

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   +L R  + I++F  +  + +       L ++  K+  SLP  L   Q   L+
Sbjct: 57  SQSGAARATLARRSATIRAFTAWALREEYLEADPALRLKAPKREQSLPGVLQAPQLERLL 116

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L   + +   +  RN AI+ LLY  G+R+ E  +L   N+  D+ TLR+ GKG+K R
Sbjct: 117 KE-LEDGAADGDPMAVRNRAIVELLYATGIRVGELAALDVDNLDPDRRTLRVIGKGNKER 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
            VP       A+ ++       +  +   P LF G+RG  ++    +  +  L   +G  
Sbjct: 176 TVPYGVPAALAVDDWLRRGRPLMAKDTSGPALFLGLRGGRVDQRQVRSVVHGLFEAMGDT 235

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            ++  H LRHS ATHLL  G DLR++Q ILGH  L+TTQIYT+V+     D + + Y Q 
Sbjct: 236 SASGPHALRHSAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSV----DRLRKSYQQA 291

Query: 318 HP 319
           HP
Sbjct: 292 HP 293


>gi|183602476|ref|ZP_02963842.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|241191170|ref|YP_002968564.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241196576|ref|YP_002970131.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183218395|gb|EDT89040.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|240249562|gb|ACS46502.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|240251130|gb|ACS48069.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|289177279|gb|ADC84525.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium animalis
           subsp. lactis BB-12]
 gi|295794163|gb|ADG33698.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis V9]
          Length = 311

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 143/305 (46%), Gaps = 27/305 (8%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY---TEEKITIQTIRQLSYT 69
           ++L ER  +++ L   RGLS+ T  +Y  D  Q L  L  +     + +T+  +R     
Sbjct: 4   QVLMER--FIEYLRSNRGLSEHTCMAYRGDILQCLEALDAFGRGNPDDVTLDDLR----- 56

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
                   R    +G  SL R    ++SF  +  +  +   +    +R  K   +LP  L
Sbjct: 57  ----MWMGRMAHTVGKTSLARKTIAVRSFFTWAYEHGMLAHNPAHALRTPKIDRNLPAVL 112

Query: 130 NEKQALTLVDNVLLHTSHETKW---IDA--------RNSAILYLLYGCGLRISEALSLTP 178
           NE QA  L+D V      +       DA        R+ A+L LLY  G+R+ E + L  
Sbjct: 113 NEDQAERLMDTVDAEAGEKNAGKSKDDALNAHAKALRDCAMLELLYATGMRVGELVGLDM 172

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKP 237
            +      T+R+ GKG+K R++P     ++A+  + +   P   N N    +F G+RG  
Sbjct: 173 GSFDWSNRTVRVLGKGNKTRVIPFGAPAQQAVEHWLHGGRPVFANGNSGNAVFIGVRGCR 232

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           ++  V ++ + +     G+P   + H LRHS ATH+L  G DLR +Q +LGH  L TTQ 
Sbjct: 233 IDQRVVRQVVHEQAEQAGVP-DISPHALRHSAATHMLDGGADLREVQEMLGHSSLQTTQR 291

Query: 298 YTNVN 302
           Y +V+
Sbjct: 292 YAHVS 296


>gi|126209269|ref|YP_001054494.1| site-specific tyrosine recombinase XerC [Actinobacillus
           pleuropneumoniae L20]
 gi|307248877|ref|ZP_07530889.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|307253490|ref|ZP_07535361.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|126098061|gb|ABN74889.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
 gi|306854614|gb|EFM86805.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|306859169|gb|EFM91211.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
          Length = 336

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 159/305 (52%), Gaps = 19/305 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L IE+  S+ TL +Y+   RQ L      ++  I+  T ++++   +R  I++   Q +G
Sbjct: 49  LRIEKQASQHTLSNYQ---RQLLAVSDMLSQAGIS--TWQEVNSATVRWIIAQSNKQGLG 103

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            +S+   L  ++ +  YL +++  + +  + ++  K S  LP+ ++ +Q    +  +L  
Sbjct: 104 AKSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQ----IGQLLTS 159

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            SHE    D R+ A++ L+Y  GLR+SE   L   ++      +R+ GKG+K RIVP+  
Sbjct: 160 DSHEPS--DLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGS 217

Query: 205 SVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              +A+  +  +   F    N    +F   RG  L+    Q  +++     GL      H
Sbjct: 218 KALEALNRWLAVRNQFKPQDN---AVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPH 274

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            LRHSFATH+L   GDLR++Q +LGH  L+TTQIYT+++ ++    + +IYD  HP   +
Sbjct: 275 KLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQH----LAKIYDAAHPRAKR 330

Query: 324 KDKKN 328
           K + +
Sbjct: 331 KKQDD 335


>gi|307264510|ref|ZP_07546095.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
 gi|306870207|gb|EFN01966.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
          Length = 336

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 159/305 (52%), Gaps = 19/305 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L IE+  S+ TL +Y+   RQ L      ++  I+  T ++++   +R  I++   Q +G
Sbjct: 49  LRIEKQASQHTLSNYQ---RQLLAVSDMLSQAGIS--TWQEVNSATVRWIIAQSNKQGLG 103

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            +S+   L  ++ +  YL +++  + +  + ++  K S  LP+ ++ +Q    +  +L  
Sbjct: 104 AKSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQ----IGQLLTS 159

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            SHE    D R+ A++ L+Y  GLR+SE   L   ++      +R+ GKG+K RIVP+  
Sbjct: 160 DSHEPS--DLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGS 217

Query: 205 SVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              +A+  +  +   F    N    +F   RG  L+    Q  +++     GL      H
Sbjct: 218 KALEALNRWLAVRNQFKPQDN---AVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPH 274

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            LRHSFATH+L   GDLR++Q +LGH  L+TTQIYT+++ ++    + +IYD  HP   +
Sbjct: 275 KLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQH----LAKIYDAAHPRAKR 330

Query: 324 KDKKN 328
           K + +
Sbjct: 331 KKQDD 335


>gi|262370170|ref|ZP_06063497.1| tyrosine recombinase XerD [Acinetobacter johnsonii SH046]
 gi|262315209|gb|EEY96249.1| tyrosine recombinase XerD [Acinetobacter johnsonii SH046]
          Length = 305

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/234 (34%), Positives = 128/234 (54%), Gaps = 9/234 (3%)

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           RS+ R LS ++SF K+L+++K+ +++ +   +  K   +LP+ L+E+    L+    + T
Sbjct: 79  RSIARCLSALRSFFKFLREQKLRSDNPVALHKTPKIGRALPKDLSEQDVDALIQAPDIET 138

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           +     +  R+ A+  +LY CGLR+SE L+L    I   Q  LRI GKG+K R+VPL   
Sbjct: 139 A-----LGLRDRAMFEVLYACGLRVSELLNLRLDLINLKQGYLRITGKGNKERLVPLGQI 193

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
             + + +Y       L  +    LF    G  ++   F   I++     G+    + HTL
Sbjct: 194 AVEWVEKYLIESRPQLYKSATDYLFLTQHGGIMSRQNFWYAIKRYALQAGIQAELSPHTL 253

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           RH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        M +++   HP
Sbjct: 254 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR----MQQLHASHHP 303


>gi|254446539|ref|ZP_05060015.1| tyrosine recombinase XerD [Verrucomicrobiae bacterium DG1235]
 gi|198260847|gb|EDY85155.1| tyrosine recombinase XerD [Verrucomicrobiae bacterium DG1235]
          Length = 309

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 151/309 (48%), Gaps = 18/309 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL+   ++L  L +E+GLS  T+++Y+ D  QFL     + E+   + + ++L+ + +  
Sbjct: 5   LLEGVDDFLAYLTLEKGLSDNTIENYQSDLSQFLA----HVEKSSRVGSWKKLTASHVSD 60

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTE-SNILNMRNLKKSNSLPRALNE 131
           +I         + SL R LS ++S   YL ++RKI    + I+    L++      ++ E
Sbjct: 61  WIYALSEGDYSNASLCRKLSSLRSLDAYLMRERKIDKSFTEIVVGPKLRRKAPFTLSIQE 120

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            + L       L     T     R+ A+L L Y  GLR+SE   L  Q I  +   L+I 
Sbjct: 121 VERL-------LSAPDLTTAQGLRDRAMLELFYSSGLRVSELSGLMLQQIDLELGALKIY 173

Query: 192 GKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           GKG K R+ P+      AI +Y  +  P  +       +F   RG  ++       +R+ 
Sbjct: 174 GKGSKERVCPMGRKAATAIGDYLRNGRPRFVKSKTGSAVFLSARGTAISRKTIWVLVRKY 233

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  G+      H LRHSFATHLL+ G DLR IQ +LGH  ++TTQIYT+V +    D  
Sbjct: 234 TKAAGIDKPVKPHMLRHSFATHLLTGGADLRIIQELLGHADIATTQIYTSVEA----DRT 289

Query: 311 MEIYDQTHP 319
              +D+ HP
Sbjct: 290 RSAHDEFHP 298


>gi|269795295|ref|YP_003314750.1| tyrosine recombinase XerD [Sanguibacter keddieii DSM 10542]
 gi|269097480|gb|ACZ21916.1| tyrosine recombinase XerD [Sanguibacter keddieii DSM 10542]
          Length = 317

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 155/317 (48%), Gaps = 25/317 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +  Q +L +L IERG S  T+ +Y  D  +++ +L     E + +  +  ++ T +  
Sbjct: 11  LRRAVQGYLDHLTIERGRSTNTVAAYRRDLDRYVAYL-----ESLDL-ALEDVTTTVVED 64

Query: 74  FISKRRTQKIGDRSLK-----RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           +++  RT   G  +L      RSL+ ++ +  +     +   +    +R   +   LP+A
Sbjct: 65  YVTVVRTGSDGRSALAAGSAARSLAAVRGWHTFCVAEGLAPANPTAGVRPPSQGKRLPKA 124

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQS 186
           ++       V+ +L            RN A+L LLY  G RISEA++L   ++       
Sbjct: 125 ISTYD----VERLLAAAGAGDTVASVRNRALLELLYSTGARISEAVTLDVDDLDLTPGLE 180

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLP-LFRGIRGKPLNPGVFQ 244
           ++R+ GKG K R+VP+     +AI  Y     P  +      P +F   RG  L+     
Sbjct: 181 SVRLFGKGSKERVVPVGSFAVEAIQAYLVRARPVLMAAGRGTPAVFLNTRGARLSRQSAW 240

Query: 245 RYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           + +R      GL  +   + HTLRHSFATHLLS G D+R +Q +LGH  ++TTQ+YT V 
Sbjct: 241 QVLRTSAETAGLDGAEHISPHTLRHSFATHLLSGGADVRVVQELLGHASVTTTQLYTMVT 300

Query: 303 SKNGGDWMMEIYDQTHP 319
           +    D + E+Y Q+HP
Sbjct: 301 A----DSLREVYVQSHP 313


>gi|257465111|ref|ZP_05629482.1| site-specific tyrosine recombinase XerC [Actinobacillus minor 202]
 gi|257450771|gb|EEV24814.1| site-specific tyrosine recombinase XerC [Actinobacillus minor 202]
          Length = 300

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 156/307 (50%), Gaps = 19/307 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +   L  E+ +S  TL +Y+   RQ     A   + +I+  + +++  + IR  +S+ 
Sbjct: 10  QPYWDYLRAEKQVSPHTLSNYQ---RQLQAVCAMLKQHQIS--SWQEVDASVIRWILSQS 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q +G +S+   L  ++ +  YL K +    +  L ++  K    LP+ ++ +Q   L+
Sbjct: 65  HKQGLGAKSIGVRLVALRQWFAYLVKHEQLPANPALGIKAPKVGRHLPKNVDAEQVAQLL 124

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +  +      T  ++ R+ A++ L+Y  GLR+SE   L    +      +R+ GKG+K R
Sbjct: 125 NTEV------TTPLEIRDLAMMELMYSSGLRLSELQGLDLDRMDLATREVRLLGKGNKER 178

Query: 199 IVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           IVP+     +AI  + ++   F+   N    +F   RG  L+    Q  + +  R  GL 
Sbjct: 179 IVPIGSKALEAIHRWLEVRMSFNPQDN---AVFLNNRGGRLSHRSIQLIMEKWGRKQGLE 235

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRHSFATH+L   GDLR++Q +LGH  L+TTQIYT+++ ++    + ++YD  
Sbjct: 236 THLHPHKLRHSFATHMLEGSGDLRAVQELLGHSSLATTQIYTHLDFQH----LAKVYDAA 291

Query: 318 HPSITQK 324
           HP   +K
Sbjct: 292 HPRARKK 298


>gi|204930199|ref|ZP_03221176.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204320603|gb|EDZ05805.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|322613026|gb|EFY09977.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322617386|gb|EFY14286.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625622|gb|EFY22444.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627045|gb|EFY23838.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631239|gb|EFY28002.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638272|gb|EFY34971.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322642792|gb|EFY39379.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646966|gb|EFY43468.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650353|gb|EFY46766.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656356|gb|EFY52650.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657581|gb|EFY53851.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665992|gb|EFY62173.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322666731|gb|EFY62908.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671026|gb|EFY67156.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322679267|gb|EFY75319.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681671|gb|EFY77698.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686002|gb|EFY81990.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323192628|gb|EFZ77856.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323196494|gb|EFZ81644.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203754|gb|EFZ88775.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205371|gb|EFZ90345.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210740|gb|EFZ95616.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323215908|gb|EGA00641.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221401|gb|EGA05819.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323227581|gb|EGA11737.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231766|gb|EGA15877.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236181|gb|EGA20258.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239582|gb|EGA23630.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244322|gb|EGA28330.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323249581|gb|EGA33493.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250327|gb|EGA34213.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256534|gb|EGA40265.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323259768|gb|EGA43401.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323265176|gb|EGA48674.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323268395|gb|EGA51867.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 300

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 149/298 (50%), Gaps = 17/298 (5%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L +ER LS +TLQ+Y+   RQ    +A   E    +++ +Q     +R+F  + R +
Sbjct: 14  LRYLGVERQLSPITLQNYQ---RQLDAIIALAGE--TGLKSWQQCDAAIVRSFAVRSRRK 68

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++      L+D  
Sbjct: 69  GLGSASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDID 128

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           L         +  R+ A+L ++YG GLR+SE + L  +++  D   + + GKG K R +P
Sbjct: 129 L------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLP 182

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           +  +    I  + DL    L  + +  LF    GK ++    Q+   +     GL     
Sbjct: 183 IGRNAVTWIEHWLDLR--GLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVH 240

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  +YD  HP
Sbjct: 241 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 294


>gi|298694544|gb|ADI97766.1| Site-specific tyrosine recombinase [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 298

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 97/322 (30%), Positives = 165/322 (51%), Gaps = 42/322 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +L  L++ER  S+ TL+SY+ D  QF  FL    +E + + T     Y + R ++S 
Sbjct: 5   QEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLE---QEHLQLNT---FEYRDARNYLSY 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNEKQ 133
             +  +   S+ R +S +++F +Y     +T + NI+N    + + KK   LP+   E++
Sbjct: 59  LYSNHLKRTSVSRKISTLRTFYEYW----MTLDENIINPFVQLVHPKKEKYLPQFFYEEE 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L   V   TS        R+  +L LLY  G+R+SE +++  Q+I    + + + GK
Sbjct: 115 MEALFKTVEEDTSK-----SLRDRVVLELLYATGIRVSELVNIKKQDIDFYANGVTVLGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDL------CPFDLNLNIQLPLFRGIRGKPLNP-GVFQRY 246
           G K R VP     R++I  Y +       C  D        L   ++G+ +   GV  RY
Sbjct: 170 GSKERFVPFGAYCRQSIENYLEHFKPIQSCNHDF-------LIVNMKGEAITERGV--RY 220

Query: 247 IRQ--LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +    ++R  G+      H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++
Sbjct: 221 VLNDIVKRTAGVS-EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQ 279

Query: 305 NGGDWMMEIYDQTHPSITQKDK 326
                + ++Y   HP   ++++
Sbjct: 280 Q----LRKVYLNAHPRAKKENE 297


>gi|261211515|ref|ZP_05925803.1| site-specific recombinase XerD [Vibrio sp. RC341]
 gi|260839470|gb|EEX66096.1| site-specific recombinase XerD [Vibrio sp. RC341]
          Length = 302

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 157/304 (51%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + +ERGL++ T+ SY  D  + L ++  +         +  +S++ ++ + S  
Sbjct: 13  EQFLDTMWLERGLAENTVASYRNDLSKLLEWMEQHHYR------LDFISFSGLQEYQSWL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R LS I+   +YL + K+  +     + + K    LP+ L+E Q     
Sbjct: 67  SEQNYKPSSKARMLSAIRRLFQYLHREKVRADDPSALLISPKLPIRLPKDLSEAQV---- 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            + LL+       I+ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG K R
Sbjct: 123 -DALLNAPDPQTPIELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVIGKGGKER 181

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VP+  +  + I E +      L L  Q    +F   RG+ +    F   I+      G+
Sbjct: 182 LVPMGENAIEWI-ETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGI 240

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            +   + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + ++++
Sbjct: 241 DVEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHN 296

Query: 316 QTHP 319
           + HP
Sbjct: 297 EHHP 300


>gi|289207303|ref|YP_003459369.1| tyrosine recombinase XerC [Thioalkalivibrio sp. K90mix]
 gi|288942934|gb|ADC70633.1| tyrosine recombinase XerC [Thioalkalivibrio sp. K90mix]
          Length = 316

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 154/323 (47%), Gaps = 27/323 (8%)

Query: 3   GNNLPEIVSFELLKERQN---WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
           G N P   + E      +   +L +L   RG S  T+++Y+ D    L  L      ++ 
Sbjct: 4   GPNPPPEAAAETTAHDADIAAFLAHLRDVRGHSPHTIKAYQRD----LAHL-----RRLH 54

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
                QL   ++R    +   Q    RS++R LS  + F  +  + +    +    +R  
Sbjct: 55  SGPWDQLKAADMRRIAGQLARQGHHPRSIQRFLSAARGFFAHQVEHRRMPANPAAGLRGP 114

Query: 120 KKSNSLPRALN---EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           +   +LPR L+    +QALT  +++          + AR+ A+L LLY  GLR+SE   L
Sbjct: 115 RAGRALPRDLDVDQTQQALTPAEDL-------DPILAARDQAMLELLYSSGLRLSELTGL 167

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
              ++  D   +R+ GKG + R VP+    R A+  +   C  D        +F   RG+
Sbjct: 168 DLTDLDLDAGLVRVLGKGRRERSVPVGRMARDALRNWLK-CRGDWAAPDAHAVFVSRRGQ 226

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            +     QR + +  R  GL +    H LRH+FA+HLL + GDLR+IQ +LGH  L TTQ
Sbjct: 227 RIGNRAVQRRVAEAGRRAGLDVRLHPHRLRHAFASHLLESSGDLRAIQELLGHANLETTQ 286

Query: 297 IYTNVNSKNGGDWMMEIYDQTHP 319
           IYT+++ ++    + ++YD  HP
Sbjct: 287 IYTHLDYQH----LAQVYDAAHP 305


>gi|282916512|ref|ZP_06324270.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           D139]
 gi|283770316|ref|ZP_06343208.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus H19]
 gi|282318999|gb|EFB49351.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           D139]
 gi|283460463|gb|EFC07553.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus H19]
          Length = 298

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 98/322 (30%), Positives = 165/322 (51%), Gaps = 42/322 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +L  L++ER  S+ TL+SY+ D  QF  FL    +E + + T     Y + R ++S 
Sbjct: 5   QEAFLNTLKVERNFSEHTLKSYKDDLIQFNQFLE---QEHLQLNT---FEYRDARNYLSY 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNEKQ 133
             +  +   S+ R +S +++F +Y     +T + NI+N    + + KK   LP+   E++
Sbjct: 59  LYSNHLKRTSVSRKISTLRTFYEYW----MTLDENIINPFVQLVHPKKEKYLPQFFYEEE 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L   V   TS        R+  IL LLY  G+R+SE +++  Q+I    + + + GK
Sbjct: 115 MEALFKTVEEDTSK-----SLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDL------CPFDLNLNIQLPLFRGIRGKPLNP-GVFQRY 246
           G K R VP     R++I  Y +       C  D        L   ++G+ +   GV  RY
Sbjct: 170 GSKERFVPFGAYCRQSIENYLEHFKPIQSCNHDF-------LIVNMKGEAITERGV--RY 220

Query: 247 IRQ--LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +    ++R  G+      H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++
Sbjct: 221 VLNDIVKRTAGVS-EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQ 279

Query: 305 NGGDWMMEIYDQTHPSITQKDK 326
                + ++Y   HP   ++++
Sbjct: 280 Q----LRKVYLNAHPRAKKENE 297


>gi|124267211|ref|YP_001021215.1| tyrosine recombinase XerD subunit [Methylibium petroleiphilum PM1]
 gi|124259986|gb|ABM94980.1| tyrosine recombinase XerD subunit [Methylibium petroleiphilum PM1]
          Length = 309

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 150/302 (49%), Gaps = 20/302 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L +E GLS  TL +Y  D   +  +L   + + +           ++RA+  +R  
Sbjct: 23  FLEALWVEDGLSDNTLAAYRRDLTLYARWLVHASGKPLDGS-----GEADLRAYALERHA 77

Query: 81  QKIGDR--SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
              G R  S  R L+  + + ++  +    +    L +   K+   +P+ L+E Q   L+
Sbjct: 78  ---GTRATSANRRLTVFRRYFRWALREHRLSADPTLKLLAAKQPLRVPKTLSEAQVEALL 134

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +   + T      +  R+ A+L +LY  GLR+SE ++L   N+   ++ LR+ GKG K R
Sbjct: 135 EAPDVDTP-----LGLRDRAMLEILYASGLRVSELVTLKSVNVGYSEAALRVTGKGSKER 189

Query: 199 IVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP        ++ Y  +     L       LF   RG P+    F + I++     G+ 
Sbjct: 190 LVPFGEEAHGWLMRYLAEARAAILGGQASDALFVTARGGPMTRQAFWQLIKRHAGAAGIQ 249

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           +  + HTLRH+FATHLL++G DLR++Q +LGH  +STT IYT+V  +     + +++ Q 
Sbjct: 250 VPLSPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVARER----LKQLHSQH 305

Query: 318 HP 319
           HP
Sbjct: 306 HP 307


>gi|258539622|ref|YP_003174121.1| tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705]
 gi|257151298|emb|CAR90270.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705]
          Length = 299

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 150/308 (48%), Gaps = 20/308 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++K    + + L +ER  S  T+ +Y  D ++F  FL    +         ++   +++ 
Sbjct: 1   MMKPLAAFQEYLTVERQYSPETVTAYLNDIQEFQAFL----KANGGFTDFSKVDDLDVQT 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEK 132
           +++    Q +   S+ R +S ++SF +YL +  +  + N   +  LKK +  LP+   E 
Sbjct: 57  YLTDLNKQALARTSIARKISSLRSFYRYLVRIDVV-KRNPFELVELKKQHHHLPQFFYEA 115

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L   V   T      +D RN A+L +LYG G+R+SE  +LT   +  +   L I G
Sbjct: 116 EIQELFKTVEGETP-----LDQRNRALLEVLYGTGIRVSECANLTLNQVDFNTGLLLIHG 170

Query: 193 KGDKIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           KG+K R VP     ++A+  Y        +   D        +F    G+P+     +  
Sbjct: 171 KGNKDRYVPFGRYAQRALQTYLKDGRQTLMNKHDAQHRF---VFVNQYGRPITARGIEYI 227

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           + QL +   L  +   H LRHSFATH+L +G DLR++Q +LGH  LSTTQIYT+V   + 
Sbjct: 228 LDQLIKQTSLTANIHPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHL 287

Query: 307 GDWMMEIY 314
            +  M+ Y
Sbjct: 288 KNEYMKYY 295


>gi|108798958|ref|YP_639155.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. MCS]
 gi|119868073|ref|YP_938025.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. KMS]
 gi|123070325|sp|Q1BAI5|XERC_MYCSS RecName: Full=Tyrosine recombinase xerC
 gi|166918890|sp|A1UEH7|XERC_MYCSK RecName: Full=Tyrosine recombinase xerC
 gi|108769377|gb|ABG08099.1| tyrosine recombinase XerC subunit [Mycobacterium sp. MCS]
 gi|119694162|gb|ABL91235.1| tyrosine recombinase XerC subunit [Mycobacterium sp. KMS]
          Length = 300

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 136/298 (45%), Gaps = 10/298 (3%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           Q L +ERG S  T ++Y  D R    F      E+     +  L+   +RA++S +    
Sbjct: 10  QYLALERGRSDHTRRAYLGDLRSLFAF----CNERTPGADLGSLTLPVLRAWLSAQAAAG 65

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
               +L R  S +K+F  +  +R +        ++  K   +LP  L + QA   +D   
Sbjct: 66  TARTTLARRTSAVKTFTAWAVRRGLMASDPATRLQMPKARRTLPAVLRQDQARDALDAAN 125

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
              + +   +  R+  I+ +LY  G+R+SE   L   ++   +  LR+ GKGDK R VP 
Sbjct: 126 -SGAQQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTSRRLLRVLGKGDKQRTVPF 184

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
                +A+  +       L      P L  G RG+ L+P   +  + +    +       
Sbjct: 185 GEPAEQALRAWLTSGRPALATAESGPALLLGARGRRLDPRQARTVVHETVGAVAGAPDIG 244

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V        +  ++DQ HP
Sbjct: 245 PHGLRHSAATHLLEGGADLRIVQELLGHSTLATTQLYTHVTVAR----LRAVHDQAHP 298


>gi|309796245|ref|ZP_07690655.1| tyrosine recombinase XerC [Escherichia coli MS 145-7]
 gi|308120127|gb|EFO57389.1| tyrosine recombinase XerC [Escherichia coli MS 145-7]
          Length = 298

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 153/307 (49%), Gaps = 17/307 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+   RQ    + F +E    +Q+ +Q   T +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--GLQSWQQCDVTMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L   ++  +   + + G
Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDINHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHP 319
           +YD  HP
Sbjct: 286 VYDAAHP 292


>gi|283782972|ref|YP_003373726.1| site-specific tyrosine recombinase XerC [Gardnerella vaginalis
           409-05]
 gi|283441162|gb|ADB13628.1| site-specific tyrosine recombinase XerC [Gardnerella vaginalis
           409-05]
          Length = 322

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 150/291 (51%), Gaps = 15/291 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +++  +   +GL + T ++Y  D  Q L +       +     I +L+  ++R++++   
Sbjct: 24  DYIDYVRANKGLGERTQKAYASDILQCLAWC-----NRHGFNNISELTTDDLRSWMADE- 77

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           ++     SL R +  ++ F  + +  +  + +    +   K  N LP  L+E QA +L++
Sbjct: 78  SRSHARSSLARKVVAVRGFFAWCQHVEYISGNPAEILMTSKIKNMLPSVLDEYQAESLMN 137

Query: 140 NVLLHTSHET------KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           NV    +  T      K +  RN+AIL LLY  G+R+ E  SL  Q+I     T+++ GK
Sbjct: 138 NVDSKANVSTSCPKNQKAVGLRNAAILELLYATGIRVGELTSLNIQDINFSSHTIKVTGK 197

Query: 194 GDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G+K R+VP      KA+  +   D     L  +++  +F G RGK ++  + ++ +    
Sbjct: 198 GNKQRVVPFGVPAYKALSAWISKDGREILLRNSVEEAVFLGTRGKRIDQRLVRQIVHDEA 257

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +   +P   + H LRHS ATH+L+ G DLR +Q +LGH  L+TTQ YT+V+
Sbjct: 258 KSAHVP-DISPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTHVS 307


>gi|262373947|ref|ZP_06067224.1| tyrosine recombinase XerD [Acinetobacter junii SH205]
 gi|262310958|gb|EEY92045.1| tyrosine recombinase XerD [Acinetobacter junii SH205]
          Length = 306

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 129/234 (55%), Gaps = 9/234 (3%)

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           RS+ R LS ++ F K+L+++K+  ++ +   ++ K   +LP+ L+E     L++   + T
Sbjct: 80  RSIARCLSALRQFFKFLREQKLRDDNPVATHQSPKIGRALPKDLSEHDVEALINAPDIST 139

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           +     +  R+ A+L +LY CGLR++E L+L  + I   Q  LRI GKG+K R+VPL   
Sbjct: 140 A-----LGLRDRAMLEVLYACGLRVTELLNLRLELINLKQGFLRITGKGNKERLVPLGQY 194

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
             + + +Y       L  +    LF    G  ++   F   I++      +    + HTL
Sbjct: 195 ACEWVEKYLSESRPQLYKSNTDYLFLTQHGGIMSRQNFWYAIKRYALQANISAELSPHTL 254

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           RH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        M E++ + HP
Sbjct: 255 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQHR----MQELHSKHHP 304


>gi|319953891|ref|YP_004165158.1| tyrosine recombinase xerc [Cellulophaga algicola DSM 14237]
 gi|319422551|gb|ADV49660.1| Tyrosine recombinase xerC [Cellulophaga algicola DSM 14237]
          Length = 308

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 158/302 (52%), Gaps = 18/302 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  L +E+  S  T+++YE D  +F++F    +E    +  I ++SY  IR +I     
Sbjct: 18  FIAYLSLEKKYSLNTIKAYENDLNEFILFCKDTSE----VVNIDEVSYVMIRNWIVALVA 73

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            KI +R++ R ++ +K++ K+L K +  + + +   + LK +  +    +E +    ++ 
Sbjct: 74  AKIVNRTINRKIASLKAYYKFLLKTETISVTPLAKHKALKTAKKIEIPFSEAE----MNE 129

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +L+       +   R+  I+ LLY  G+R  E ++L   N+   Q T+++ GK +K RIV
Sbjct: 130 ILVAIPFSEDFEGIRDKLIIELLYATGIRRIELVNLKVVNVDLRQKTIKVLGKRNKERIV 189

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL---P 257
           PL+ S+     EY D     +++  +  +F    G  +   +  R I     Y GL    
Sbjct: 190 PLVASLVLLFQEYLDARSSVVSVGAKEFVFLLKSGGKIYETLVYRVINH---YFGLVSSK 246

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           +  + H LRH+FATHLL+ G DL S++ +LGH  L++TQ+YT+    N    + +++ ++
Sbjct: 247 VKKSPHILRHTFATHLLNKGADLNSVKELLGHASLASTQVYTH----NSIAELKKVHLKS 302

Query: 318 HP 319
           HP
Sbjct: 303 HP 304


>gi|237717200|ref|ZP_04547681.1| integrase [Bacteroides sp. D1]
 gi|262405968|ref|ZP_06082518.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_22]
 gi|294647940|ref|ZP_06725492.1| tyrosine recombinase XerD [Bacteroides ovatus SD CC 2a]
 gi|294806338|ref|ZP_06765185.1| tyrosine recombinase XerD [Bacteroides xylanisolvens SD CC 1b]
 gi|298479972|ref|ZP_06998171.1| tyrosine recombinase XerD [Bacteroides sp. D22]
 gi|229443183|gb|EEO48974.1| integrase [Bacteroides sp. D1]
 gi|262356843|gb|EEZ05933.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_22]
 gi|292636848|gb|EFF55314.1| tyrosine recombinase XerD [Bacteroides ovatus SD CC 2a]
 gi|294446594|gb|EFG15214.1| tyrosine recombinase XerD [Bacteroides xylanisolvens SD CC 1b]
 gi|295085584|emb|CBK67107.1| tyrosine recombinase XerD subunit [Bacteroides xylanisolvens XB1A]
 gi|298273781|gb|EFI15343.1| tyrosine recombinase XerD [Bacteroides sp. D22]
          Length = 319

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 149/286 (52%), Gaps = 13/286 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + Q L++E+ LS  TL +Y  D  + + FL   T E I +  +     ++++ F +  
Sbjct: 18  RKYQQYLKLEKSLSLNTLDAYLTDLDKLMSFL---TLEGIYVLDV---CLSDLQRFAAGL 71

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               I  RS  R LSGIKSF ++L             +   K    LP  L  ++   ++
Sbjct: 72  HDIGIHPRSQARILSGIKSFFRFLILENYLEADPSELLEGPKIGFKLPEVLTVEEIDRII 131

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             V       +K    RN AIL  LY CGLR+SE ++L   ++  D+  ++++GKG K R
Sbjct: 132 SAV-----DRSKAEGQRNRAILETLYSCGLRVSELITLKLSDLYFDEGFIKVEGKGSKQR 186

Query: 199 IVPLLP-SVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGL 256
           +VP+ P ++ +  L   D    ++    +  +F   R GK L+  +    I++L +  G+
Sbjct: 187 LVPISPRAINEIKLYITDRNQIEVKKGHEDFVFVSQRRGKGLSRIMIFHMIKELAQKAGI 246

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++
Sbjct: 247 TKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHID 292


>gi|161617068|ref|YP_001591033.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168238402|ref|ZP_02663460.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168244638|ref|ZP_02669570.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168263161|ref|ZP_02685134.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|194447983|ref|YP_002047961.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194736121|ref|YP_002116878.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|161366432|gb|ABX70200.1| hypothetical protein SPAB_04901 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194406287|gb|ACF66506.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194711623|gb|ACF90844.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197288766|gb|EDY28141.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|205336497|gb|EDZ23261.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205348233|gb|EDZ34864.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 300

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 149/298 (50%), Gaps = 17/298 (5%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L +ER LS +TLQ+Y+   RQ    +A   E    +++ +Q     +R+F  + R +
Sbjct: 14  LRYLGVERQLSPITLQNYQ---RQLDAIIALAGE--TGLKSWQQCDAAIVRSFAVRSRRK 68

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++      L+D  
Sbjct: 69  GLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDID 128

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           L         +  R+ A+L ++YG GLR+SE + L  +++  D   + + GKG K R +P
Sbjct: 129 L------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLP 182

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           +  +    I  + DL    L  + +  LF    GK ++    Q+   +     GL     
Sbjct: 183 IGRNAVTWIEHWLDLR--GLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVH 240

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  +YD  HP
Sbjct: 241 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 294


>gi|298253366|ref|ZP_06977158.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
 gi|297532761|gb|EFH71647.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
          Length = 322

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 150/291 (51%), Gaps = 15/291 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +++  +   +GL + T ++Y  D  Q L +       +     I +L+  ++R++++   
Sbjct: 24  DYIDYVRANKGLGERTQKAYASDILQCLAWC-----NRHGFNNISELTTDDLRSWMADE- 77

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           ++     SL R +  ++ F  + +  +  + +    +   K  N LP  L+E QA +L++
Sbjct: 78  SRSHARSSLARKVVAVRGFFAWCQHVEYISGNPAEILMTPKIKNMLPSVLDEYQAESLMN 137

Query: 140 NVLLHTSHET------KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           NV    +  T      K +  RN+AIL LLY  G+R+ E  SL  Q+I     T+++ GK
Sbjct: 138 NVDSKANVSTSCPKNQKAVGLRNAAILELLYATGIRVGELTSLNIQDINFSSHTIKVTGK 197

Query: 194 GDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G+K R+VP      KA+  +   D     L  +++  +F G RGK ++  + ++ +    
Sbjct: 198 GNKQRVVPFGVPAYKALSAWISKDGREILLRNSVEEAVFLGTRGKRIDQRLVRQIVHDEA 257

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +   +P   + H LRHS ATH+L+ G DLR +Q +LGH  L+TTQ YT+V+
Sbjct: 258 KSAHVP-DISPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTHVS 307


>gi|325107018|ref|YP_004268086.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM
           5305]
 gi|324967286|gb|ADY58064.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM
           5305]
          Length = 309

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 150/311 (48%), Gaps = 16/311 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+ L  ER  S+LT ++Y  D   F  FL +  +        R +  T +R +++   
Sbjct: 7   GFLRYLRHERNASELTRKAYAED---FASFLDYCEDRHGYFPEPRDVDTTFLRGYLAYLH 63

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  ++ R L+ ++S  +Y  + ++   +    +R  +    LP  L   +      
Sbjct: 64  DCGYQRTTIARRLACLRSLFRYCLREQLCDSNPAKALRTPRTGRKLPHYLTTSEV----- 118

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           + LL        +  R+ AIL  LY  GLR++E ++L  ++   D + L ++GKG K RI
Sbjct: 119 SQLLEAPPANHPLGIRDRAILETLYTAGLRVAELVALDIEDWDRDANVLLVRGKGRKERI 178

Query: 200 VPLLPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            P+     +A+   LE  ++ P   N + Q  +F    G  L      R + +  +  GL
Sbjct: 179 APVGSYAERALSRWLEIREVGP-RANSDDQQAIFLNKFGTRLTTRSVGRLLEKHLQTSGL 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
              T+ HTLRHSFATHLL  G DLRS+Q +LGH  L+TTQIYT+V++      + + Y+ 
Sbjct: 238 SNKTSPHTLRHSFATHLLDGGADLRSVQELLGHKSLTTTQIYTHVSTAR----LRDTYEL 293

Query: 317 THPSITQKDKK 327
            HP  T   +K
Sbjct: 294 AHPHATAARRK 304


>gi|194445824|ref|YP_002043179.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|200387005|ref|ZP_03213617.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|194404487|gb|ACF64709.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|199604103|gb|EDZ02648.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 300

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 154/311 (49%), Gaps = 17/311 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +    L ++   +L+ L +ER LS +TLQ+Y+   RQ    +A   E    +++ +Q   
Sbjct: 1   MTDVALSQDVSRFLRYLGVERQLSPITLQNYQ---RQLDAIIALAGE--TGLKSWQQCDA 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R+F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ 
Sbjct: 56  AIVRSFAVRSRRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKN 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++      L+D  L         +  R+ A+L ++YG GLR+SE + L  +++  D   +
Sbjct: 116 IDVDDVNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEV 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +P+  +    I  + DL    L  + +  LF    GK ++    Q+   
Sbjct: 170 WVMGKGSKERRLPIGRNAVTWIEHWLDLR--GLFASDEEALFLSKLGKRISARNVQKRFA 227

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++   
Sbjct: 228 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 284

Query: 309 WMMEIYDQTHP 319
            +  +YD  HP
Sbjct: 285 -LASVYDAAHP 294


>gi|16762185|ref|NP_457802.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29143674|ref|NP_807016.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213162145|ref|ZP_03347855.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213425411|ref|ZP_03358161.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213649576|ref|ZP_03379629.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213854889|ref|ZP_03383129.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289829107|ref|ZP_06546781.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|34222945|sp|Q8Z3A8|XERC_SALTI RecName: Full=Tyrosine recombinase xerC
 gi|25299264|pir||AI0918 integrase/recombinase [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16504489|emb|CAD09371.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29139309|gb|AAO70876.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 300

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 149/298 (50%), Gaps = 17/298 (5%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L +ER LS +TLQ+Y+   RQ    +A   E    +++ +Q     +R+F  + R +
Sbjct: 14  LRYLGVERQLSPITLQNYQ---RQLDAIIALAGE--TGLKSWQQCDAAIVRSFAVRSRRK 68

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++      L+D  
Sbjct: 69  GLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDID 128

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           L         +  R+ A+L ++YG GLR+SE + L  +++  D   + + GKG K R +P
Sbjct: 129 L------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLP 182

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           +  +    I  + DL    L  + +  LF    GK ++    Q+   +     GL     
Sbjct: 183 IGRNAVTWIEHWLDLR--GLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVH 240

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  +YD  HP
Sbjct: 241 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 294


>gi|89074452|ref|ZP_01160929.1| tyrosine recombinase [Photobacterium sp. SKA34]
 gi|89049740|gb|EAR55290.1| tyrosine recombinase [Photobacterium sp. SKA34]
          Length = 302

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 155/302 (51%), Gaps = 16/302 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  ER LS  T Q+Y+   RQ         E  +++   +Q+    +R   SK     + 
Sbjct: 17  LRSERELSLHTQQNYK---RQLTRIAEQLVE--LSVDNWQQVDAGWVRQIASKGMRDGLK 71

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             SL   LS ++SF  +L  + +   +    +   +K+  LP+ L+  +   L+D     
Sbjct: 72  ASSLAMRLSALRSFFDFLVHQNVLKANPAKGVAAPRKARPLPKNLDVDEMNQLLD----- 126

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
             ++   +  R+ A++ L+YG GLR++E + +  ++I   +  LR+ GKGDK R+VP   
Sbjct: 127 -VNDDDPLAIRDRAMMELMYGAGLRLAELVGIDVRHISLSKGDLRVIGKGDKERVVPFSG 185

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             R+ + ++  L   ++ L  +  LF    G  ++    Q+ + +  +   +      H 
Sbjct: 186 LAREWVAKWLKLRD-NIALAEEPALFVSKLGTRISTRNVQKRMAEWGQKQAVSSHINPHK 244

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++    + ++YD+ HP   ++
Sbjct: 245 LRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LAKVYDEAHPRAKKR 300

Query: 325 DK 326
           +K
Sbjct: 301 NK 302


>gi|289523581|ref|ZP_06440435.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503273|gb|EFD24437.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 297

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 148/299 (49%), Gaps = 21/299 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L+   G +  T+ +Y  D  QF+ ++         ++ + ++    IRAF+ +   
Sbjct: 12  FLEYLKYVSGRTDNTVINYAVDLSQFVDYVI-----SQGVEEVEKIEQAHIRAFLRELAA 66

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                 S+ R LS ++S+  +L +    T      +R  K+   LPRAL  +    +++N
Sbjct: 67  YGYSKSSVLRKLSSLRSWTNFLLQSGKLTSDPTKGVRGPKEPKRLPRALAYEDVKMMLEN 126

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                       + R+ AIL LLYGCGLR++E ++L  +++  ++  LR++GKG+K R+V
Sbjct: 127 ------GPNGEFEIRDRAILELLYGCGLRVAELVALDWEDVDIEERWLRVKGKGEKERLV 180

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+    +KA+ E+           +  PLF G   + +      R + +  + +GL    
Sbjct: 181 PMGRHAQKALREWQVFLG-----KLSGPLFPGDGCERIAVRTVHRVVSRAAKRVGLA-GV 234

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           + H LRHSFATH+L  G  LR +Q +LGH  L TTQ Y  ++ +     + + Y   HP
Sbjct: 235 SPHMLRHSFATHMLEGGASLRVLQELLGHQSLVTTQRYLKISYEQ----LKKSYINAHP 289


>gi|68249255|ref|YP_248367.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           86-028NP]
 gi|319775473|ref|YP_004137961.1| site-specific tyrosine recombinase [Haemophilus influenzae F3047]
 gi|81336341|sp|Q4QMP0|XERC_HAEI8 RecName: Full=Tyrosine recombinase xerC
 gi|68057454|gb|AAX87707.1| site-specific recombinase XerC [Haemophilus influenzae 86-028NP]
 gi|317450064|emb|CBY86278.1| site-specific tyrosine recombinase [Haemophilus influenzae F3047]
          Length = 295

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 152/304 (50%), Gaps = 25/304 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L IER +S  T+ +Y+      +  LA     +  I +  Q++ + +R  +++ + Q + 
Sbjct: 12  LRIERQMSPHTITNYQHQLDATIKILA-----QQDIHSWTQVTPSVVRFILAESKKQGLK 66

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           ++SL   LS ++ FL +L ++     +    +   K+   LP+ ++ +Q    +  +L +
Sbjct: 67  EKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGWHLPKNMDGEQ----IQQLLAN 122

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            S E   ID R+ AIL L+Y  GLR+SE   L   +I      +R+ GKG+K R+VP   
Sbjct: 123 DSKEP--IDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGR 180

Query: 205 SVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
               AI E+  +     P D        LF    G  ++    Q+ +       GL    
Sbjct: 181 YASHAIQEWLKVRALFNPKDE------ALFVSQLGNRISHRAIQKRLETWGIRQGLNSHL 234

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
             H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    + E+YDQ HP 
Sbjct: 235 NPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEVYDQAHPR 290

Query: 321 ITQK 324
             +K
Sbjct: 291 AKRK 294


>gi|320532036|ref|ZP_08032926.1| site-specific tyrosine recombinase XerC [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320135749|gb|EFW27807.1| site-specific tyrosine recombinase XerC [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 307

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 148/301 (49%), Gaps = 17/301 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ-TIRQLSYTEIRAFISKRRTQKI 83
           L ++R LS  T+++Y  D    L FL    ++   +   +  L   ++R +++       
Sbjct: 16  LALQRDLSGHTVRAYLVDVSDLLSFLGVGEKDTEPVDPALATLDLADLRDWLAAMAASGH 75

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
              +L R  + +++F  +  +  +        +R  +  N LP  L  +QA  L+     
Sbjct: 76  SRATLARRSASVRTFSSWAFEAGLLASDVAARLRAPRVDNRLPGVLTTQQASQLLKTAA- 134

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL- 202
             + + + +  R+ AI+  LY  G+R+SE + L   ++   Q TLR+ GKG K R VP  
Sbjct: 135 DLASDRQVLAVRDLAIIETLYATGVRVSELIGLDVADLDHSQRTLRVLGKGRKERTVPYG 194

Query: 203 LPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           LP+ R A+ E+     ++C  D        LF G RG+ ++P   +  + +L     +P 
Sbjct: 195 LPAAR-ALEEWLRRRGEICAVDAGG----ALFLGARGRRIDPRAVRDVVHRLCSAAQVP- 248

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRHS ATH+L  G DLRS+Q +LGH  L+TTQ YT+V+++     +  +Y+Q  
Sbjct: 249 DLGPHGLRHSTATHVLGGGADLRSVQELLGHSSLATTQRYTHVSAER----LRSVYEQAF 304

Query: 319 P 319
           P
Sbjct: 305 P 305


>gi|262274923|ref|ZP_06052734.1| site-specific recombinase XerD [Grimontia hollisae CIP 101886]
 gi|262221486|gb|EEY72800.1| site-specific recombinase XerD [Grimontia hollisae CIP 101886]
          Length = 298

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 151/303 (49%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + +ERGLS+ TL SY  D  +   +L    E  +T+   +   Y      ++ +
Sbjct: 9   EQFLDAMWMERGLSENTLASYRNDLTKLCQWLDKDGELLVTVACSKLQEYQHWLFDLNYK 68

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           ++ +       R LS ++   +YL + K+  +     + + K    LP+ L+E Q   L+
Sbjct: 69  QSSR------ARMLSAMRRLFQYLYREKLREDDPTATLISPKLPKRLPKDLSEAQVEALL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D       +    I+ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG K R
Sbjct: 123 D-----APNVEDVIELRDKAMLELLYATGLRVTELISLTTENVSLRQGVVRVIGKGGKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+  +  + +  Y     P  L        F   R + +    F   I+      G+ 
Sbjct: 178 LVPMGEAAIEWLEHYMAHSRPALLGEQSSDVFFPSRRARMMTRQTFWHRIKFYAALAGID 237

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ +
Sbjct: 238 GEMLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQE 293

Query: 317 THP 319
            HP
Sbjct: 294 HHP 296


>gi|257056527|ref|YP_003134359.1| tyrosine recombinase XerD subunit [Saccharomonospora viridis DSM
           43017]
 gi|256586399|gb|ACU97532.1| tyrosine recombinase XerD subunit [Saccharomonospora viridis DSM
           43017]
          Length = 311

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 149/312 (47%), Gaps = 33/312 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++ +L +ERG ++ T+  Y  D R++L  LA        +  +RQ++   +  F +  R 
Sbjct: 16  YVDHLTVERGTARNTVDGYARDLRRYLAHLA-----DAGVTDLRQVARDHVVGFAASLRH 70

Query: 81  QKIGDR------SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
            + GDR      S  R+LS ++   ++      T E    ++R    +  LP+AL     
Sbjct: 71  GE-GDRPPLAPSSAARALSAVRGLHRFAHAEGWTEEDPARDVRPPPLTRRLPKALPVADV 129

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           L L++     T  + + +  R+ A+L LLY  G RISEA  L   ++   + T+ + GKG
Sbjct: 130 LRLLNTP---TGDDARSL--RDRALLELLYSTGARISEATGLDVDDVDRAERTVVLDGKG 184

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL------PLFRGIRGKPLN-PGVFQRYI 247
            + R+VP    V +  LE  D         +         +F   RG  L+  G +Q  +
Sbjct: 185 GRQRLVP----VGRPALEALDAYLIRARPALAAKGRGTGAVFLNARGGRLSRQGAWQ-VL 239

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +      G+    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQ+YT V      
Sbjct: 240 KVAAERAGISTPVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTVNT-- 297

Query: 308 DWMMEIYDQTHP 319
             + E+Y  THP
Sbjct: 298 --LREVYATTHP 307


>gi|126640334|ref|YP_001083318.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC
           17978]
          Length = 250

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 81/240 (33%), Positives = 130/240 (54%), Gaps = 11/240 (4%)

Query: 82  KIGD--RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           K+G   RS+ R LS ++ F K+L+++K+ +++ +    + K   +LP+ L+E+    L+ 
Sbjct: 18  KVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQ 77

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              + T+     +  R+ A+  +LY CGLR+SE L+L  + I   Q  LRI GKG+K R+
Sbjct: 78  APDITTA-----LGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERL 132

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPL       +  Y +     L  +    LF    G  ++   F   I+       +   
Sbjct: 133 VPLGQYACDWVERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKHYALQANIQAE 192

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        M +++++ HP
Sbjct: 193 LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR----MQQLHEKHHP 248


>gi|145219991|ref|YP_001130700.1| tyrosine recombinase XerD [Prosthecochloris vibrioformis DSM 265]
 gi|145206155|gb|ABP37198.1| tyrosine recombinase XerD [Chlorobium phaeovibrioides DSM 265]
          Length = 306

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 150/308 (48%), Gaps = 25/308 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N+L  L IER  S  T  SY  D +++L  +      +    ++  ++   I  F+ + 
Sbjct: 15  ENFLNYLLIERNFSPNTRDSYRNDLQRYLQAM------QEGCGSLEAINPDSINRFLDEL 68

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +   S+ R++S I+S  ++L   ++   +   N+   K    LP  L   + + ++
Sbjct: 69  HKTGLEASSIARNVSAIRSLHRFLINDRVLESNPAENLHQPKLPKYLPSVLTLDETMRIL 128

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                    E  ++  R+ AIL LLY  G+R+SE ++L  QN+   +  +R+ GKG K R
Sbjct: 129 QAPAQKVPPEKLYL--RDQAILELLYATGMRVSELVNLKQQNLYLPEQFIRVFGKGSKER 186

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-------LFRGIRGKPLNPGVFQRYIRQLR 251
           +VP+  S   ++  Y         L IQL        LF   RGK ++       +++  
Sbjct: 187 LVPVGSSAVNSLTLYRQ------KLRIQLAGAQSEDCLFLNARGKKMSRMAVFTIVKEYA 240

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+P + + HT RH+FATHLL  G DLR++Q +LGH  +  TQIY++++      ++ 
Sbjct: 241 MLAGIPKTVSPHTFRHTFATHLLEGGADLRAVQEMLGHSSIVATQIYSHIDR----SFVK 296

Query: 312 EIYDQTHP 319
           E++   HP
Sbjct: 297 EVHRSFHP 304


>gi|327395985|dbj|BAK13407.1| tyrosine recombinase XerC [Pantoea ananatis AJ13355]
          Length = 301

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 148/301 (49%), Gaps = 19/301 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L++L++ER LS LTL SY    RQ    +    E KI+  +  QL    +R+  ++ R
Sbjct: 11  GFLRHLKVERQLSPLTLSSY---ARQLAALVTIADEMKISAWS--QLDPAMVRSMAARSR 65

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +   SL   LS ++SFL +   R +   +    +   +    LP+ ++      L++
Sbjct: 66  RAGLAASSLALRLSALRSFLDWQVSRDMLAANPAKGIATPRNGRHLPKNIDVDDVNQLLE 125

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             L      T  +  R+  +L ++YG GLR+SE +++  +++  +   + + GKG K R 
Sbjct: 126 IDL------TDPLAIRDRTMLEVMYGGGLRLSELVNMDCRHVDLEAGEVWVLGKGSKERR 179

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+    R A+       P     N     LF   RG  ++    Q+   +     G+  
Sbjct: 180 VPI---GRTAVSWIQQWLPLRTAFNPGDDALFLSSRGSRISARNVQKRFAEWGIKQGISS 236

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRHSFATHLL + GDLR++Q +LGH  LSTTQIYT+++ ++    +  +YD  H
Sbjct: 237 HIHPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LASVYDAAH 292

Query: 319 P 319
           P
Sbjct: 293 P 293


>gi|255325242|ref|ZP_05366348.1| tyrosine recombinase XerC [Corynebacterium tuberculostearicum
           SK141]
 gi|255297807|gb|EET77118.1| tyrosine recombinase XerC [Corynebacterium tuberculostearicum
           SK141]
          Length = 305

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 140/291 (48%), Gaps = 19/291 (6%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +G ++ T++ Y  D R              ++ T  +     +R ++++   +     +L
Sbjct: 32  KGRAEATVRGYRSDLRDL----------ARSVPTFAEFDLNSLRQWLAEAVAEGKSRSTL 81

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R  +  K F  +  +           +   K    LP  L  +QA  L+ N +  ++ E
Sbjct: 82  ARRTAAAKGFSTWAVREGHLKRDVAARLVTPKVGRHLPTVLAPEQAGELMGNAV--SADE 139

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
             ++  R+SAIL LLY  G+R++E + L   +I   + TL + GKG+K R+VP   +   
Sbjct: 140 VHFL--RDSAILELLYASGMRVAELVRLDLGDIDFQRGTLHVTGKGNKQRVVPFGHAAED 197

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           A+ ++ D    ++       +F G RG  ++    +R + +  +  G     T H +RHS
Sbjct: 198 ALKQWIDKGRGEIAAAGTEAVFVGSRGGRIDQRQVRRIVEKAAKVTGTQ-GLTPHGVRHS 256

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            ATHLL  G DLR +Q +LGH  L+TTQIYT+V+++     +  +YDQ HP
Sbjct: 257 AATHLLEGGADLRVVQELLGHSSLNTTQIYTHVSAQR----LQRVYDQAHP 303


>gi|331665461|ref|ZP_08366360.1| tyrosine recombinase XerC [Escherichia coli TA143]
 gi|331057359|gb|EGI29348.1| tyrosine recombinase XerC [Escherichia coli TA143]
          Length = 298

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 154/307 (50%), Gaps = 17/307 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+   RQ    + F +E    +Q+ +Q   T +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--GLQSWQQCDVTMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSVPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHP 319
           +YD  HP
Sbjct: 286 VYDAAHP 292


>gi|283788448|ref|YP_003368313.1| tyrosine recombinase [Citrobacter rodentium ICC168]
 gi|282951902|emb|CBG91620.1| tyrosine recombinase [Citrobacter rodentium ICC168]
          Length = 298

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 159/304 (52%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +E+ L++ TL +Y  D    + +LA     K +++T +     +++A +++R
Sbjct: 9   EQFLDALWLEKNLAENTLSAYRRDLTMLVEWLA---HRKASLETAQS---EDLQALLAER 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   ++L + KI  +     + + K    LP+ L+E Q   L+
Sbjct: 63  MDGGYKATSTARLLSAVRRLFQHLYREKIRPDDPSAALASPKLPQRLPKDLSEAQVERLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              ++        ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K R
Sbjct: 123 QAPVVDQP-----LELRDKAMLEILYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL       +  Y +   P+ LN ++I + LF   R + +    F   I+      G+
Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292

Query: 316 QTHP 319
           Q HP
Sbjct: 293 QHHP 296


>gi|228471614|ref|ZP_04056388.1| tyrosine recombinase XerC [Capnocytophaga gingivalis ATCC 33624]
 gi|228277033|gb|EEK15719.1| tyrosine recombinase XerC [Capnocytophaga gingivalis ATCC 33624]
          Length = 296

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 155/303 (51%), Gaps = 18/303 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E+  S  T+ +Y  D ++F  +L   TE + T+  + Q++Y+ IR++I     + I 
Sbjct: 9   LSLEKKYSSHTVTAYLADVQEFAAYL---TEVEPTM-LLPQVNYSLIRSWIIHLVERGIT 64

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALTLVDNVL 142
           +RS+ R L+ +K++  +L +      S  +    LK  K  S+P +  E      +D+VL
Sbjct: 65  NRSINRKLASLKAYYAFLVRTLAIKASPFVPHIPLKAPKKISIPFSSRE------IDSVL 118

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
                E  +   RN  I+ L Y  G+R +E + L   +I   Q T+++ GK +K RI+PL
Sbjct: 119 SQPIVEDSYTQMRNKTIIELFYATGMRRAELIDLKISDIDFSQKTVKVLGKRNKERIIPL 178

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           + +V + + +Y  L    +  N ++ LF   +GK + P +    I          L  + 
Sbjct: 179 IHTVVETLEKYLTLRK-GVETN-EVFLFLTDKGKKMYPKLVYNIINSYFSTATTKLKKSP 236

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           H LRHSFATHLL NG DL +++ +LGH  L+ TQ+YT+ +     +     Y   HP +T
Sbjct: 237 HVLRHSFATHLLDNGADLNAVKELLGHAGLAATQVYTHSSIAELKNQ----YKNAHPRMT 292

Query: 323 QKD 325
            K+
Sbjct: 293 NKE 295


>gi|311064002|ref|YP_003970727.1| integrase/recombinase [Bifidobacterium bifidum PRL2010]
 gi|310866321|gb|ADP35690.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum
           PRL2010]
          Length = 322

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 153/319 (47%), Gaps = 29/319 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            ++ ++ +ERGL++ T+++YE D R++L +LA        I     +   +I  ++++  
Sbjct: 11  QFIAHISVERGLARATVRAYESDLRRYLSWLAHTR----GITDPDAIGKADIEEYVAQLD 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           +     RS  R L+ I  F ++   +   ++     ++  K +  LP  L   +   L+D
Sbjct: 67  SDGDSARSKARRLASIHEFHRFALAQHAVSDDVSATVKAPKSAQMLPDVLTIDEVSRLLD 126

Query: 140 NVLLHTSHETKWI----------DA---RNSAILYLLYGCGLRISEALSLTPQNI-MDDQ 185
            +     H T             DA   R+ A+L  +Y  G R+SEA+ +   +I +DD 
Sbjct: 127 AIP--DPHGTDAARGRAGIGALPDAVLLRDRALLEFMYATGCRVSEAVGMNLDDIDIDDA 184

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGI----RGKPLNP 240
              R+ GKG K R+VPL     +A+  Y       L    +  P  R +    RG+ L+ 
Sbjct: 185 HVARLTGKGSKQRLVPLGEYACRALRRYLAEGRGTLEGRAKGTPERRAVFLNKRGRRLSR 244

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                 I+      G+      HTLRHSFATHL+  G D+R++Q +LGH  ++TTQIYT+
Sbjct: 245 QSVWEVIKLAGERAGIDRPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTH 304

Query: 301 VNSKNGGDWMMEIYDQTHP 319
           V+ +     ++E Y  +HP
Sbjct: 305 VSPET----LIEAYLTSHP 319


>gi|329114345|ref|ZP_08243107.1| Tyrosine recombinase XerD [Acetobacter pomorum DM001]
 gi|326696421|gb|EGE48100.1| Tyrosine recombinase XerD [Acetobacter pomorum DM001]
          Length = 306

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 97/289 (33%), Positives = 148/289 (51%), Gaps = 16/289 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE-IRAFISKRR 79
           +L+ L  ER  +  TL +YE D       LA    E  T+QT    + TE ++ +++   
Sbjct: 9   FLEMLAAERAAAPNTLAAYEADLTSCAESLA---REGQTLQT----ATTEGLQNWMAALV 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                 R++ R LS I+ F  +L +  +  ++   ++ + K    LPR L+E + L L++
Sbjct: 62  GSGQARRTVARRLSCIRQFYLFLLREGMRADNPAAHLDSPKPRTPLPRFLSESEVLALLN 121

Query: 140 NVLL--HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                   S   K       A L LLY  GLRISE L+L  + I  DQ  + ++GKG + 
Sbjct: 122 ACAEPDGASLPKKRRGILAKAALELLYASGLRISELLALPRKAIAGDQRMIMVRGKGGRE 181

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLR-RYLG 255
           R+VPL  S R+A     ++   D +L     LF G    KP+    F R +  +  R   
Sbjct: 182 RLVPLSDSAREAAQALLEV---DAHLESAF-LFPGRDPAKPMTRQAFDRILHTVAIRAEI 237

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            P   + H LRHSFATHLL++G DLR++Q +LGH  ++TTQIYT+V ++
Sbjct: 238 DPARLSPHVLRHSFATHLLAHGADLRALQMLLGHADIATTQIYTHVQTE 286


>gi|260599234|ref|YP_003211805.1| site-specific tyrosine recombinase XerD [Cronobacter turicensis
           z3032]
 gi|260218411|emb|CBA33498.1| Tyrosine recombinase xerD [Cronobacter turicensis z3032]
          Length = 298

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 154/303 (50%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER L++ +L +Y  D    + +L        T+Q+       +++  +++R
Sbjct: 9   EQFLDALWLERNLAENSLSAYRRDLSMVVEWLHHRGLSLATVQS------GDLQTLLAER 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   ++L + KI  +     + + K    LP+ L+E Q    V
Sbjct: 63  VEGGYKATSTARMLSAVRRLFQHLYREKIRDDDPSALLASPKLPQRLPKDLSEAQ----V 118

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D +L   + E   I+ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K R
Sbjct: 119 DRLLQAPTVEEP-IELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       + +Y     P+ LN      LF   R + +    F   I+   +  G+ 
Sbjct: 178 LVPLGEEAVYWVEQYLTHGRPWLLNGQSLDILFPSNRARQMTRQTFWHRIKHYAQLAGID 237

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q
Sbjct: 238 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQ 293

Query: 317 THP 319
            HP
Sbjct: 294 HHP 296


>gi|284006600|emb|CBA71861.1| phage integrase [Arsenophonus nasoniae]
          Length = 297

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 156/304 (51%), Gaps = 24/304 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L+ L +ER LS +TL +Y+   RQ  + +    +  + I    QL  + +R  ++K R
Sbjct: 7   DFLRYLRVERQLSPVTLINYQ---RQLAVLVDMAID--MDINDWAQLETSHVRMMVAKCR 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q +   SL   LS ++SFL +L  + + T +    +R  K    LP+ ++  +   L++
Sbjct: 62  RQGLQAASLALRLSSLRSFLDWLVGQGLITANPAKTIRAPKNKRHLPKNIDVDEVNQLLN 121

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             L         +  R+  +L ++YG GLR+SE ++L  Q++      +R+ GKG K R 
Sbjct: 122 IDLADP------LSVRDRTMLEVMYGAGLRLSELINLNCQHLDLQSGEVRVMGKGSKERK 175

Query: 200 VPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           VPL     + ++ + ++       D  + I +   + I  + +        IRQ     G
Sbjct: 176 VPLGRIAVEWLIRWLEMRQQYAKQDEAVFISIQRGKRISARNVQKRFALWGIRQ-----G 230

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +      H LRHSFATH+L + GDLR++Q +LGH  LSTTQ+YT+++ ++    + ++YD
Sbjct: 231 VRSHIHPHKLRHSFATHILESSGDLRAVQELLGHANLSTTQVYTHLDFQH----LAKVYD 286

Query: 316 QTHP 319
             HP
Sbjct: 287 VAHP 290


>gi|218701603|ref|YP_002409232.1| site-specific tyrosine recombinase XerD [Escherichia coli IAI39]
 gi|254037938|ref|ZP_04871996.1| site-specific tyrosine recombinase [Escherichia sp. 1_1_43]
 gi|218371589|emb|CAR19428.1| site-specific tyrosine recombinase [Escherichia coli IAI39]
 gi|226839562|gb|EEH71583.1| site-specific tyrosine recombinase [Escherichia sp. 1_1_43]
          Length = 298

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 158/304 (51%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +E+ L++ TL +Y    R   + + +     +T+ T++     +++A +++R
Sbjct: 9   EQFLDALWLEKNLAENTLNAYR---RDLSMMVEWLHHRGLTLATVQS---DDLQALLAER 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K   +    ++ + K    LP+ L+E Q   L+
Sbjct: 63  LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG+K R
Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL       +  Y +   P+ LN ++I + LF   R + +    F   I+      G+
Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292

Query: 316 QTHP 319
           Q HP
Sbjct: 293 QHHP 296


>gi|312139850|ref|YP_004007186.1| tyrosine recombinase xerd [Rhodococcus equi 103S]
 gi|311889189|emb|CBH48503.1| tyrosine recombinase XerD [Rhodococcus equi 103S]
          Length = 309

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 145/308 (47%), Gaps = 17/308 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L +L +ERG ++ TL SY  D  ++  FL     E      IR ++ T++  F+   
Sbjct: 9   DSYLDHLAVERGAARNTLTSYRRDLDRYARFL-----EARGTDDIRSVTETDVSEFVVAL 63

Query: 79  R-------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           R          +   S  R+L  ++   ++     +T+      ++       LP++L  
Sbjct: 64  RKGDPAEGVVALAPSSAARALIAVRGLHRFAAAEGVTSGDVARAVKPPTPGRRLPKSLPL 123

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
              L +++      S +      R+ A+L LLY  G RISEA+ L   ++     ++ ++
Sbjct: 124 DDVLAILEASGGDGSADNPRT-LRDRALLELLYSTGARISEAVGLDVDDLDTQSRSVLLR 182

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG K R+VP+      AI  Y       L++     LF  +RG  L+     + +    
Sbjct: 183 GKGGKERVVPVGRPAITAIDNYLVRGRPALSVRGGPALFLNVRGGRLSRQSAWQVLHTAA 242

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+ ++ + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V        + 
Sbjct: 243 EKAGIAVAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVGA----LR 298

Query: 312 EIYDQTHP 319
           E++ Q HP
Sbjct: 299 EVWAQAHP 306


>gi|293610050|ref|ZP_06692351.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827282|gb|EFF85646.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 306

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 81/240 (33%), Positives = 132/240 (55%), Gaps = 11/240 (4%)

Query: 82  KIGD--RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           K+G   RS+ R LS ++ F K+L+++K+ +++ +    + K   +LP+ L+E+    L+ 
Sbjct: 74  KVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQ 133

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              ++T+     +  R+ A+  +LY CGLR+SE L+L  + I   Q  LRI GKG+K R+
Sbjct: 134 APDINTA-----LGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERL 188

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPL     + +  Y       L  +    LF    G  ++   F   I++      +   
Sbjct: 189 VPLGQFACEWVERYLQDARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAE 248

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        M +++++ HP
Sbjct: 249 LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR----MQQLHEKHHP 304


>gi|327479757|gb|AEA83067.1| site-specific tyrosine recombinase XerD [Pseudomonas stutzeri DSM
           4166]
          Length = 298

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 148/308 (48%), Gaps = 32/308 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKRR 79
           +L  L +E+GL+  + ++Y  D   F  +L    E  + +    R++    I   ++ R 
Sbjct: 12  YLDALWLEKGLADNSREAYRNDLASFNGWL---QERGVRLAAAGREI----ILDHLAWRL 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                 RS  R LSG++ F +YL +    +    L +   +    LP+AL+E        
Sbjct: 65  NNGYKARSTARFLSGLRGFYRYLLREGEISLDPTLRVDLPRLGRPLPKALSEADV----- 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL        +  R+ A+L +LY CGLR++E +SLT + +   Q  LR  GKG+K R+
Sbjct: 120 EALLAAPDTGDPLGLRDRAMLEVLYACGLRVTELISLTLEQVSMRQGVLRTFGKGNKERL 179

Query: 200 VPLLPSV--------RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           VPL            R A  +     P D+       LF   RG+ +    F   I+   
Sbjct: 180 VPLGEEALHWLQRYQRDARDQLLAGRPSDV-------LFPSQRGEQMTRQTFWHRIKLHA 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R  G+    + HTLRH+FATHLL++G DLR++Q +LGH  LSTTQIYT++        + 
Sbjct: 233 RVAGIATGISPHTLRHAFATHLLNHGADLRTVQMLLGHSDLSTTQIYTHIARAR----LQ 288

Query: 312 EIYDQTHP 319
           E++   HP
Sbjct: 289 ELHATHHP 296


>gi|116333446|ref|YP_794973.1| integrase [Lactobacillus brevis ATCC 367]
 gi|116098793|gb|ABJ63942.1| tyrosine recombinase XerC subunit [Lactobacillus brevis ATCC 367]
          Length = 311

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 139/288 (48%), Gaps = 10/288 (3%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  L  ER  S  T+++Y  D  +F+ FLA    EK     I QL   ++  ++S    
Sbjct: 8   FMTYLSGERQYSAETVKAYHEDLSEFVQFLADNGGEK-PWTAIDQL---DVEVYLSDLYD 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     ++ R LS ++S   +L       +     ++  +  N LPR   E++   L   
Sbjct: 64  RHYARTTIARKLSTLRSLYSFLMSNGQAQDDPFAYVQLKRHQNHLPRFFYEREMTALFTA 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                ++  + +  R++A+L +LYG G+R+SE ++L    I  D   + I GKG+K R V
Sbjct: 124 A---AANPNEQLATRDTALLEVLYGTGIRVSECVNLALSEIDFDGRIMLIHGKGNKERYV 180

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           P       A+  Y+D     L    Q     +F   RG+ L        + Q+ +   L 
Sbjct: 181 PFGHYASDALQTYFDTARTPLMAQYQQDHPYVFINHRGQQLTSAGVTYLLNQIIKRSTLT 240

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
                H LRH+FATHLL+ G DLRS+Q +LGH  LSTTQIYT+V  ++
Sbjct: 241 TDIHPHMLRHTFATHLLNRGADLRSVQELLGHSSLSTTQIYTHVTREH 288


>gi|238759282|ref|ZP_04620448.1| Tyrosine recombinase xerD [Yersinia aldovae ATCC 35236]
 gi|238702443|gb|EEP94994.1| Tyrosine recombinase xerD [Yersinia aldovae ATCC 35236]
          Length = 299

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 156/303 (51%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER L++ TL SY  D      +L  +  +   ++ + Q    ++++F+++R
Sbjct: 10  EQFLDALWLERNLAENTLASYRLDLHALTGWLECHGSD--LLRAVPQ----DLQSFLAER 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q     
Sbjct: 64  IEGGYKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQV---- 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            + LL++ +    ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K R
Sbjct: 120 -DALLNSPNVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKER 178

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       I  Y +   P+ +N      LF   R + +    F   I+      G+ 
Sbjct: 179 LVPLGEEAVYWIENYMEHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGID 238

Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q
Sbjct: 239 SERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQQ 294

Query: 317 THP 319
            HP
Sbjct: 295 HHP 297


>gi|224282680|ref|ZP_03646002.1| Integrase [Bifidobacterium bifidum NCIMB 41171]
 gi|310287139|ref|YP_003938397.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum
           S17]
 gi|313139838|ref|ZP_07802031.1| tyrosine recombinase xerD [Bifidobacterium bifidum NCIMB 41171]
 gi|309251075|gb|ADO52823.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum
           S17]
 gi|313132348|gb|EFR49965.1| tyrosine recombinase xerD [Bifidobacterium bifidum NCIMB 41171]
          Length = 322

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 153/320 (47%), Gaps = 29/320 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
             ++ ++ +ERGL++ T+++YE D R++L +LA        I     +   +I  ++++ 
Sbjct: 10  DQFIAHISVERGLARATVRAYESDLRRYLSWLAHTR----GITDPDAIGKADIEEYVAQL 65

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            +     RS  R L+ I  F ++   +   ++     ++  K +  LP  L   +   L+
Sbjct: 66  DSDGDSARSKARRLASIHEFHRFALAQHAVSDDVSATVKAPKSAQMLPDVLTIDEVSRLL 125

Query: 139 DNVLLHTSHETKWI----------DA---RNSAILYLLYGCGLRISEALSLTPQNI-MDD 184
           D +     H T             DA   R+ A+L  +Y  G R+SEA+ +   +I +DD
Sbjct: 126 DAIP--DPHGTDAARGRAGIGALPDAVLLRDRALLEFMYATGCRVSEAVGMNLDDIDIDD 183

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGI----RGKPLN 239
               R+ GKG K R+VPL     +A+  Y       L    +  P  R +    RG+ L+
Sbjct: 184 AHVARLTGKGSKQRLVPLGEYACRALRRYLAEGRGTLEGRAKGTPDRRAVFLNKRGRRLS 243

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                  I+      G+      HTLRHSFATHL+  G D+R++Q +LGH  ++TTQIYT
Sbjct: 244 RQSVWEVIKLAGERAGIDRPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYT 303

Query: 300 NVNSKNGGDWMMEIYDQTHP 319
           +V+ +     ++E Y  +HP
Sbjct: 304 HVSPET----LIEAYLTSHP 319


>gi|119943804|ref|YP_941484.1| tyrosine recombinase XerC [Psychromonas ingrahamii 37]
 gi|254799353|sp|A1SQX0|XERC_PSYIN RecName: Full=Tyrosine recombinase xerC
 gi|119862408|gb|ABM01885.1| tyrosine recombinase XerC subunit [Psychromonas ingrahamii 37]
          Length = 299

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 153/304 (50%), Gaps = 16/304 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L ++  +RGLS +T+ +Y+ +  +F+   A   E K+   T  +L    +R  +     
Sbjct: 11  YLNHIASQRGLSPVTITNYQSNLAEFV---ALLNENKVGCWT--ELDGQLVRLMVKTLHK 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  RS+   LS ++SFL YL +  I + +    +   K    LP+ ++      L+D 
Sbjct: 66  KGLKARSIATKLSALRSFLDYLVQFDILSNNPAKGIAAPKLDKPLPKNVSVDDMFQLLD- 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                  E   +  R+  ++ L+Y  GLR+SE + +  Q+I      + + GKG K R++
Sbjct: 125 -----IDEKDPLSIRDQCMMELMYSSGLRLSELVGINLQDIKLSAKEIMVTGKGSKQRLL 179

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+       +  +  + P +  +  +  LF   + K ++    Q  + +      LP   
Sbjct: 180 PITDRAVATVKIWLKIRP-EFCIKDEKALFVSKQKKRISARNVQARMEKWGLKQALPGHI 238

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
             H LRHSFATH+L + G+LR++Q++LGH  L+TTQIYT+++ ++    + +IYDQ HP 
Sbjct: 239 NPHKLRHSFATHMLESSGNLRAVQTLLGHADLATTQIYTHLDFQH----LSKIYDQAHPR 294

Query: 321 ITQK 324
             +K
Sbjct: 295 AKRK 298


>gi|317508416|ref|ZP_07966086.1| phage integrase [Segniliparus rugosus ATCC BAA-974]
 gi|316253263|gb|EFV12663.1| phage integrase [Segniliparus rugosus ATCC BAA-974]
          Length = 308

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 142/306 (46%), Gaps = 26/306 (8%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           ++L  ERG S  T+++Y  D R +  F     E       +  ++  ++R ++S+   + 
Sbjct: 18  RHLRFERGRSPNTVRAYLGDLRAY--FGPARDETAPARDVLGAVTIADLRGWLSEMTAEG 75

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE---KQALTLV- 138
               +L R  SG+K+F ++  +  +      + +   K   +LP  L +   +QALT   
Sbjct: 76  ASRATLARRASGMKTFFEWAVRGGLAAHDPTVRLTTPKLRKALPHVLRKDQAEQALTSAP 135

Query: 139 ---DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
              D  LL           R+  +L LLYG G+R+ E   L   ++   +    + GKGD
Sbjct: 136 APSDGALL----------LRDQLVLELLYGTGMRVGELCGLDVDDVDQGRRLATVLGKGD 185

Query: 196 KIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ-LRRY 253
           K R+VP       AI  +  D  P          L  G RG  L+    +R + + + R 
Sbjct: 186 KQRVVPFGAKASDAISAWLRDGRPKLAGPRSGAALLLGARGGRLDQRTARRVVHERVARE 245

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GLP     H LRHS ATHLL  G DLR +Q ILGH  L+TTQIYT+V+ +     +  +
Sbjct: 246 PGLP-DLGPHGLRHSAATHLLEGGADLRVVQEILGHSSLATTQIYTHVSVER----IRAV 300

Query: 314 YDQTHP 319
           + Q HP
Sbjct: 301 HSQAHP 306


>gi|237729834|ref|ZP_04560315.1| site-specific tyrosine recombinase XerD [Citrobacter sp. 30_2]
 gi|226908440|gb|EEH94358.1| site-specific tyrosine recombinase XerD [Citrobacter sp. 30_2]
          Length = 298

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 155/304 (50%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER L++ TL +Y  D    + +L        T Q+       +++A +++R
Sbjct: 9   EQFLDALWLERNLAENTLSAYRRDLTMLVEWLHHRGASLATAQS------DDLQALLAER 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS  + F ++L + K   +    ++ + K    LP+ L+E Q   L+
Sbjct: 63  MDGGYKATSSARLLSATRRFFQHLYREKYREDDPSASLASPKLPQRLPKDLSEAQVERLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L+        ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K R
Sbjct: 123 QAPLIEQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL       +  Y +   P+ LN ++I + LF   R + +    F   I+      G+
Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292

Query: 316 QTHP 319
           Q HP
Sbjct: 293 QHHP 296


>gi|330719126|ref|ZP_08313726.1| site-specific recombinase, phage integrase family protein
           [Leuconostoc fallax KCTC 3537]
          Length = 308

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 142/292 (48%), Gaps = 19/292 (6%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL----AFYTEEKITIQTIRQLSYTEIR 72
           E Q +   LE ER  S  T+++Y  D  +F+ FL     F +  K+  QT+      +IR
Sbjct: 5   ELQLYRDYLEFERLYSAQTIKAYMIDIHEFVDFLKQNGGFTSYAKV--QTL------DIR 56

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            +++    + +   ++ R +S ++ F ++L    +  ++   N+   K  N LP    E+
Sbjct: 57  VYLNDLYERSLARTTIARKISSLRMFYQFLVANHVLEDNPFENVALRKHQNHLPEFFYEE 116

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L D    +  H   W   RN+A+L LLY  G R++E ++L    +   +  + ++G
Sbjct: 117 EMKVLFDTA--YNQHTKLW--QRNAALLELLYATGARVAEIVNLRLPQLDFSKKLVLLRG 172

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQ 249
           KGDK R VP        +  Y      +L    Q     +F   RG PL        + Q
Sbjct: 173 KGDKERYVPFGKFADHILQRYTQELRQELLTQYQQDHDFVFVNNRGAPLTTAGVSYILSQ 232

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           L +   L      H LRH+FATHLL++G D+R++Q +LGH  LSTTQ+YT+V
Sbjct: 233 LMKQSSLNGKIHPHMLRHTFATHLLNHGADMRTVQELLGHVNLSTTQVYTHV 284


>gi|52424578|ref|YP_087715.1| site-specific tyrosine recombinase XerC [Mannheimia
           succiniciproducens MBEL55E]
 gi|81387473|sp|Q65V80|XERC_MANSM RecName: Full=Tyrosine recombinase xerC
 gi|52306630|gb|AAU37130.1| XerC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 295

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 100/311 (32%), Positives = 158/311 (50%), Gaps = 32/311 (10%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L++  N+L+N   ER +S  TL +Y+   RQ    +    E    IQ  RQ+S + +R  
Sbjct: 5   LQKYWNYLRN---ERQVSSYTLTNYQ---RQMDAVMKILQEN--DIQNWRQVSPSVVRFI 56

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++ +   + ++SL   LS ++ FL +L  +     +  + +   K+   LP+ +N +Q 
Sbjct: 57  LAQSKKSGLHEKSLALRLSALRQFLAFLVLQGELKVNPAIGISAPKQGKHLPKNINAEQL 116

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQSTLRIQG 192
             L+DN     S E   ID R+ A+L L+Y  GLR+SE   L+LT  N    +  +R+ G
Sbjct: 117 NKLLDN----NSKEP--IDLRDKAMLELMYSSGLRLSELQGLNLTSLNFRSRE--IRVLG 168

Query: 193 KGDKIRIVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           KG+K RI+P       ++ E+  +     P D        LF    G  ++    Q+ + 
Sbjct: 169 KGNKERILPFGRHASHSVQEWLKVRLLFNPKDD------ALFVSSLGNRMSNRSIQKRME 222

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                 GL      H LRHSFAT +L    DLR++Q +LGH  LSTTQIYT++N ++   
Sbjct: 223 IWGVRQGLNSHLNPHKLRHSFATQMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH--- 279

Query: 309 WMMEIYDQTHP 319
            + E+YDQ HP
Sbjct: 280 -LAEVYDQAHP 289


>gi|283458210|ref|YP_003362828.1| integrase [Rothia mucilaginosa DY-18]
 gi|283134243|dbj|BAI65008.1| integrase [Rothia mucilaginosa DY-18]
          Length = 422

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 153/304 (50%), Gaps = 23/304 (7%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  E+  S+ T++SY  D   F  ++A     +  ++ +  +  + IR ++     ++  
Sbjct: 131 LRYEKHRSEETIRSYISDLEGFFGYMA-----RRGVRHLDSIDASLIREWLGSLHLRQAA 185

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             ++ R  S +++F  + ++ ++   +    MR  K+ + LP  L+ +Q      N LL 
Sbjct: 186 RSTVVRRGSTLRTFFTWAQEEELVHANPTRGMRTPKRESHLPPVLSREQM-----NQLLT 240

Query: 145 TSHETKWIDARNS------AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           T  E +  D R++      A++ +LY  G+RISE   L  Q++     T+R+ GKG+K R
Sbjct: 241 TLQERRAQDPRDARLLRLEAVVEVLYASGMRISELTGLDLQSVDRANKTVRVLGKGNKER 300

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           +VPL     KA+  +     P  +    Q    LF G RG   N    +  + +L R + 
Sbjct: 301 VVPLGTPALKALNRWVSYGRPQWIPEGSQGVTALFIGPRGGRANARQIREDLTRLLRTVE 360

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
              ++ AH LRHS ATHL+  G D+RS+Q +LGH  L+TTQIYT+V+ K     + E Y 
Sbjct: 361 NTQASGAHVLRHSAATHLVDGGADIRSVQELLGHSSLATTQIYTHVSMKR----LAETYA 416

Query: 316 QTHP 319
           + HP
Sbjct: 417 RAHP 420


>gi|284033002|ref|YP_003382933.1| tyrosine recombinase XerD [Kribbella flavida DSM 17836]
 gi|283812295|gb|ADB34134.1| tyrosine recombinase XerD [Kribbella flavida DSM 17836]
          Length = 313

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 151/309 (48%), Gaps = 23/309 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L +ERGL+  TL SY  D R++  +LA        I  + +++   +  F+ + R 
Sbjct: 11  YLDHLTVERGLAANTLASYRRDLRRYDEYLA-----GAGISALGRVTEAVVGDFLMRLRE 65

Query: 81  QKIGDR--------SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
              GD         S  R++  ++ F K+  +  +T       ++       LP+AL+  
Sbjct: 66  ---GDEHHPPLTASSAGRTVVAVRGFHKFCLREGLTVIDPAAAVKPPVPPQRLPKALSVD 122

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + +T +         E   +  R++A+L  LYG G RISEA+ L   ++  +   + ++G
Sbjct: 123 E-VTRILAAAAGADAEPAVLATRDAALLEFLYGTGARISEAVGLDVDDVDLESGQVLLRG 181

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQL 250
           KG K R+VP+    R+A+  Y      DL    +    LF   RG  L+       +R+ 
Sbjct: 182 KGSKERVVPVGSYAREALSAYQVRGRPDLVARGRGTHALFLNARGGRLSRQSAWTVLRRA 241

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  G+    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQ+YT V      D +
Sbjct: 242 AQRAGISKEISPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTV----DKL 297

Query: 311 MEIYDQTHP 319
            E+Y  +HP
Sbjct: 298 REVYATSHP 306


>gi|300361600|ref|ZP_07057777.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03]
 gi|300354219|gb|EFJ70090.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03]
          Length = 307

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 97/316 (30%), Positives = 152/316 (48%), Gaps = 18/316 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L+K+ Q++L     ER  SK T+ SY  D  +   F     +E        ++   ++ 
Sbjct: 7   KLIKQFQDYLN---YERNYSKNTVSSYLNDLDEAKQFF----KENGGFSGWDKVKSRDVE 59

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F+    TQ     +  R +S ++SF ++L KR++     +  +        LP+   EK
Sbjct: 60  IFLQNLATQNRSRTTQARKMSSLRSFYRFLVKREVLENDPMQTISLRLGEKKLPQFFYEK 119

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   + D+++ H       +  RN A+  L Y  G+R+SE  SL    I  D   + + G
Sbjct: 120 EMRQVFDSLVGHDR-----LVVRNRAMFELFYATGMRLSEMASLKLDQIDFDLKIILVHG 174

Query: 193 KGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQL 250
           KG+K R VP       A+ EY D + P  L  N  L  +F   RG+ L     +  ++Q+
Sbjct: 175 KGNKDRYVPFGKDALDALKEYRDDVRPALLGQNEDLGYVFLNNRGQKLTGRGIEYIMQQV 234

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+      H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V  K+    +
Sbjct: 235 FIKAGVGGKVHPHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKH----L 290

Query: 311 MEIYDQTHPSITQKDK 326
              Y +  P   +KD+
Sbjct: 291 QADYQKFFPRKDKKDE 306


>gi|187779532|ref|ZP_02996005.1| hypothetical protein CLOSPO_03128 [Clostridium sporogenes ATCC
           15579]
 gi|187773157|gb|EDU36959.1| hypothetical protein CLOSPO_03128 [Clostridium sporogenes ATCC
           15579]
          Length = 291

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 159/299 (53%), Gaps = 17/299 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++++L+ ++ LSK TL++Y  D  +F  F+    E+ +++ T+       I AF+   + 
Sbjct: 8   YIKDLQ-KKNLSKNTLEAYRRDVEKFSEFVKGREEKILSVDTV------TIMAFVQYLQR 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     S+ R++  I++F KYL K+ + +E   L     K   ++P+ L+ ++    VD 
Sbjct: 61  EGRATSSIVRNIVSIRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILSVEE----VDK 116

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +L       K +  R+ A+L L+Y  G++I+E L+L   +I    + ++ +G   + RI+
Sbjct: 117 LLNSPDSSKKGL--RDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRERII 174

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+     K +  Y ++ P     N+   LF  ++G  +    F + I+   +   +    
Sbjct: 175 PIGSYAVKCLKNYLEVRPAINVYNLDY-LFLNLKGTQMTRQGFWKIIKFYAKEASIDKEI 233

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            ++TLRHSFA HLL NG D++S+Q +LGH  L+ TQIY++++ K+    + E+Y   HP
Sbjct: 234 DSYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSK---IAEVYKNAHP 289


>gi|299142044|ref|ZP_07035178.1| tyrosine recombinase XerD [Prevotella oris C735]
 gi|298576506|gb|EFI48378.1| tyrosine recombinase XerD [Prevotella oris C735]
          Length = 307

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 91/287 (31%), Positives = 154/287 (53%), Gaps = 14/287 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L+ L++ER  S+ TL +Y  D    + +L  Y + +    T  QL   +++ F +  
Sbjct: 13  KSYLRYLKLERNYSQNTLDAYSHD----ITWLMDYCKREGLEMTALQLE--DLQHFAATL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +IG RS  R LSGI+SF ++L     I T+   L + +      LP  L+  +   L
Sbjct: 67  HEFQIGPRSQSRILSGIRSFYRFLLLDGYIETDPTEL-LESPALGQHLPEVLSTAEVDML 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
             ++ L     +K    RN AI+ +L+ CGLR+SE ++L    +  D   +R+ GKG K 
Sbjct: 126 EQSIDL-----SKPEGQRNRAIIEVLFSCGLRVSELVNLKLSQLYLDDGFIRVLGKGSKE 180

Query: 198 RIVPLLP-SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+ P ++++  L + D    ++    +  +F   RG  L   +    I++     G+
Sbjct: 181 RLVPISPRAIKELQLWFTDRVHLNIKPGEEDFVFLNRRGHHLTRTMILIMIKRQAEEAGI 240

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++
Sbjct: 241 KKTISPHTLRHSFATALLQGGADLRAIQAMLGHESIGTTEIYTHIDT 287


>gi|110644136|ref|YP_671866.1| site-specific tyrosine recombinase XerC [Escherichia coli 536]
 gi|123048654|sp|Q0TAR4|XERC_ECOL5 RecName: Full=Tyrosine recombinase xerC
 gi|110345728|gb|ABG71965.1| integrase/recombinase XerC [Escherichia coli 536]
          Length = 298

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 153/307 (49%), Gaps = 17/307 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+   RQ    + F +E    +Q+ +Q   T +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIIHFASEN--GLQSWQQCDVTMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G   L   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAAGLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DMSRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHP 319
           +YD  HP
Sbjct: 286 VYDAAHP 292


>gi|314923700|gb|EFS87531.1| tyrosine recombinase XerD [Propionibacterium acnes HL001PA1]
          Length = 306

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 95/311 (30%), Positives = 157/311 (50%), Gaps = 27/311 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L++L +ERGLS  T+Q+Y  D  ++  +L         I ++ +++  ++  F  +R
Sbjct: 10  EDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLGSRG-----IGSLAEVTRVDVEEF--RR 62

Query: 79  RTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               IG    S+ R +  +++  ++              M    +S  LP+AL   Q  +
Sbjct: 63  HLDHIGLAPASVTRCVVAVRNLHRFAVGSGQVQADVTAGMSPGTRSRRLPKALTMDQVES 122

Query: 137 LVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNI---MDDQS-TLRIQ 191
           L+       + +T  ++  R++A+L LLYG G R+SE  +L   +I   +DD    LR+ 
Sbjct: 123 LL------AAPDTSTVEGLRDAALLELLYGTGARVSEVCALDVDDIRRVLDDPDLGLRLI 176

Query: 192 GKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           GKGDK RIVPL     KA+  +       +    N +  L    RG+ L+       IR+
Sbjct: 177 GKGDKERIVPLGSYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRR 236

Query: 250 LRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                GL +   + H+LRHS+ATHLL  G D+R +Q +LGH  ++TTQIYT V +    D
Sbjct: 237 AGEAAGLDVEHLSPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVTA----D 292

Query: 309 WMMEIYDQTHP 319
            + E+Y  +HP
Sbjct: 293 HLREVYRSSHP 303


>gi|309775481|ref|ZP_07670483.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916777|gb|EFP62515.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53]
          Length = 323

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 146/309 (47%), Gaps = 26/309 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q++L  ++     +  T+ SY+ D +++ ++L    +     Q +  +   +I++F+S+ 
Sbjct: 8   QDYLHYIQAVDQKALATIHSYQQDLQEYEVWLIGKHK-----QVMEDILPQDIQSFLSEL 62

Query: 79  RTQKIGDRSLKRS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
              + G+   KRS     L+ I  F +Y+  +  T     +++R  KK   LP   N   
Sbjct: 63  EDGQKGEDGRKRSSVNHMLTSIHMFHRYITMQHPTILDPSIHLRGGKKEQQLPLYFNPHD 122

Query: 134 ALTLVDNVLLHTSHETKWIDARN---SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
              L+D+            D R+    AIL LLYGCGLR+SE   L    +  +Q  LR+
Sbjct: 123 IERLLDSF---------GEDERSLYQKAILELLYGCGLRVSEVCELRLNQVHLEQGYLRV 173

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKGDK R+VP+      A+  Y               +F   RG  L        I+Q 
Sbjct: 174 IGKGDKERMVPMHKRCVLALRVYVTQIRPGWEKRKSTRVFINSRGNILTRQYVHTLIKQR 233

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              L L    +AH+ RHSFATHLL  G DLR +Q +LGH  ++TTQIYT+V ++     +
Sbjct: 234 LHMLNLDERLSAHSFRHSFATHLLDGGADLRVVQELLGHRDIATTQIYTHVQNRR----L 289

Query: 311 MEIYDQTHP 319
            E  +  HP
Sbjct: 290 KEAIESYHP 298


>gi|317125403|ref|YP_004099515.1| tyrosine recombinase XerC subunit [Intrasporangium calvum DSM
           43043]
 gi|315589491|gb|ADU48788.1| tyrosine recombinase XerC subunit [Intrasporangium calvum DSM
           43043]
          Length = 319

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 156/314 (49%), Gaps = 14/314 (4%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           PE    E +     + ++L  ERG S+ T ++Y  D      F+  +      +  + +L
Sbjct: 17  PEPAGLEAVL--SEFTRHLRSERGRSEHTTRAYVSDINHLFSFVVAHG-----LSDLGEL 69

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKSNSL 125
              ++R+++  +        ++ R  +  ++FLK+  +  +I T+ + L +   ++S +L
Sbjct: 70  RLADLRSWLGAQADGGAARSTIARRAAAARTFLKWASRSGRIETDPS-LRLVAPRRSRTL 128

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P  L +++A  ++D   +    +   I  R+ A+L LLY  G+R+ E +SL   ++   +
Sbjct: 129 PDVLKQREASAMLDVAAVRAD-DADPIHVRDRAVLELLYASGIRVGELVSLDLDDLDLRE 187

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            T+R+ GKG K R+VP       A+ E+       +       LF G RG  ++P   + 
Sbjct: 188 RTVRVMGKGAKERVVPFGVPAASALQEWLAARRLLVGPRSGPALFLGRRGARVDPRQVRS 247

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            + ++  +L        H LRHS ATHLL  G DLR +Q +LGH  L+TTQIYT+V+ + 
Sbjct: 248 LVHEVLSHLPDAPDLGPHGLRHSAATHLLEGGADLRMVQEVLGHASLATTQIYTHVSVER 307

Query: 306 GGDWMMEIYDQTHP 319
               + + Y+Q HP
Sbjct: 308 ----LRKSYEQAHP 317


>gi|295108294|emb|CBL22247.1| tyrosine recombinase XerD subunit [Ruminococcus obeum A2-162]
          Length = 294

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 161/304 (52%), Gaps = 20/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  L   +  SK T  SYE D ++ + +L    E+ +T  +  +++ T+++ +++K 
Sbjct: 6   EDFILYLHETKNTSKNTEVSYERDLKKLIRYLQ---EQDLT--SFSEVTCTDLQGYLNKI 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +++ +   ++ R+++ I++   YL K+ I  E     +   K    LP  L+ ++    V
Sbjct: 61  KSENLAASTISRNIASIRALYHYLLKKGIVAEDPTEVLHTPKIEKKLPEILSVEE----V 116

Query: 139 DNVLLHTSHET-KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           D +L      T K I  R++A++ LLY  G+R+SE + L+  +I + Q    +    DK 
Sbjct: 117 DRLLKQPDIRTPKGI--RDNAMMELLYATGMRVSELIHLSTTDI-NLQMGYVVCHDSDKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           RI+P+    R AIL+Y +     F  + N +  LF    GK ++   F + ++      G
Sbjct: 174 RIIPIGNVSRNAILQYMEHSRGFFTKDTN-ESALFTNCSGKSMSRQGFWKVLKGYAADAG 232

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFA H+L NG D++S+Q +LGH  +S+TQIY  +N       M ++Y 
Sbjct: 233 IHRDITPHTLRHSFAAHMLQNGADVKSVQEMLGHADISSTQIYLGLNVSK----MRDVYM 288

Query: 316 QTHP 319
           + HP
Sbjct: 289 KAHP 292


>gi|326331272|ref|ZP_08197564.1| tyrosine recombinase XerD [Nocardioidaceae bacterium Broad-1]
 gi|325950905|gb|EGD42953.1| tyrosine recombinase XerD [Nocardioidaceae bacterium Broad-1]
          Length = 298

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 146/307 (47%), Gaps = 19/307 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L +L +ERGL+  TL SY  D R++  FLA    + +T      +S   +  F++  
Sbjct: 2   RTYLDHLTVERGLAANTLSSYRRDLRRYAEFLAQQDVDDLT-----AVSEATVSGFLAHL 56

Query: 79  RT-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           R        +   S  R++  ++ F K+     +   +   +++  +    LP+AL    
Sbjct: 57  REGSEEHPALSATSAARTVVAVRGFHKFAVADGLVEANPAGHVKPPRAEKRLPKALP--- 113

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
            L+ V+ +L         +  R+ A+L +LYG G RISEA+ L   ++        ++GK
Sbjct: 114 -LSDVEAILEAAGAPGTPLALRDRALLEVLYGTGARISEAVGLDVDDLDRVDHVALLRGK 172

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K RIVP+     +A+  Y      DL +      LF   RG  L+       + +   
Sbjct: 173 GGKERIVPVGSYAIEAVEAYLTRARPDLASARSGGALFLNARGGRLSRQSAWTVLTRAAE 232

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V   N    + E
Sbjct: 233 RAGIDKDVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVDN----LRE 288

Query: 313 IYDQTHP 319
           ++   HP
Sbjct: 289 VFATAHP 295


>gi|325124215|gb|ADY83738.1| site-specific tyrosine recombinase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 306

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 79/234 (33%), Positives = 129/234 (55%), Gaps = 9/234 (3%)

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           RS+ R LS ++ F K+L+++K+ +++ +    + K   +LP+ L+E+    L+    ++T
Sbjct: 80  RSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQAPDINT 139

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           +     +  R+ A+  +LY CGLR+SE L+L  + I   Q  LRI GKG+K R+VPL   
Sbjct: 140 A-----LGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERLVPLGQF 194

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
             + +  Y       L  +    LF    G  ++   F   I++      +    + HTL
Sbjct: 195 ACEWVERYLQDARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAELSPHTL 254

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           RH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        M +++++ HP
Sbjct: 255 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR----MQQLHEKHHP 304


>gi|294637959|ref|ZP_06716226.1| tyrosine recombinase XerC [Edwardsiella tarda ATCC 23685]
 gi|291088891|gb|EFE21452.1| tyrosine recombinase XerC [Edwardsiella tarda ATCC 23685]
          Length = 303

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 94/300 (31%), Positives = 147/300 (49%), Gaps = 21/300 (7%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           LQ L +ER LS  T+ +Y    RQ    +A   E  +T      L    +RA +++ R Q
Sbjct: 16  LQMLRVERQLSPRTVDTYR---RQLAAIIALLQESGVT--DWLALDSARVRALVARSRRQ 70

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +   SL   LS ++SFL +         +    +   ++   LP+ L+       VD+V
Sbjct: 71  GLEPASLALRLSALRSFLDWQVSCGALAANPAKGVAAPRQGRHLPKNLD-------VDDV 123

Query: 142 -LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L    E+  +  R+ A+L L+YG GLR+SE + L  +++      + + GKG K R +
Sbjct: 124 NRLLAIDESDTLAVRDRAMLELMYGGGLRLSELVGLDCRHLDLATGEVWVLGKGSKERRL 183

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+    R+A+          + L  Q   LF   RG  ++P   Q+   +     G+   
Sbjct: 184 PI---GREAVRWVEKWLALRIALQPQDDALFISSRGGRISPRNVQKRFAEWGVKQGVTSH 240

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRHSFATHLL + GDLR++Q +LGH  LSTTQIYT+++ ++    +  +YD  HP
Sbjct: 241 IHPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LANVYDAAHP 296


>gi|238787321|ref|ZP_04631120.1| Tyrosine recombinase xerD [Yersinia frederiksenii ATCC 33641]
 gi|238724583|gb|EEQ16224.1| Tyrosine recombinase xerD [Yersinia frederiksenii ATCC 33641]
          Length = 299

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 154/303 (50%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER L++ TL SY  D      +L  +  + +   +       ++++F+++R
Sbjct: 10  EQFLDALWLERNLAENTLASYRLDLHALSGWLEHHGSDLLRAGS------QDLQSFLAER 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q     
Sbjct: 64  IEGGYKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQV---- 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            + LL++ +    ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K R
Sbjct: 120 -DALLNSPNVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKER 178

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       I  Y +   P+ +N      LF   R + +    F   I+      G+ 
Sbjct: 179 LVPLGEEAVYWIENYMEHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGID 238

Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q
Sbjct: 239 SERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQQ 294

Query: 317 THP 319
            HP
Sbjct: 295 HHP 297


>gi|282853638|ref|ZP_06262975.1| tyrosine recombinase XerD [Propionibacterium acnes J139]
 gi|282583091|gb|EFB88471.1| tyrosine recombinase XerD [Propionibacterium acnes J139]
 gi|314967052|gb|EFT11151.1| tyrosine recombinase XerD [Propionibacterium acnes HL082PA2]
 gi|314983153|gb|EFT27245.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA3]
 gi|315092375|gb|EFT64351.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA4]
 gi|315103783|gb|EFT75759.1| tyrosine recombinase XerD [Propionibacterium acnes HL050PA2]
 gi|327327186|gb|EGE68962.1| tyrosine recombinase XerD [Propionibacterium acnes HL103PA1]
          Length = 306

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 95/311 (30%), Positives = 157/311 (50%), Gaps = 27/311 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L++L +ERGLS  T+Q+Y  D  ++  +L         I ++ +++  ++  F  +R
Sbjct: 10  EDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLGSRG-----IGSLAEVTRVDVEEF--RR 62

Query: 79  RTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               IG    S+ R +  +++  ++              M    +S  LP+AL   Q  +
Sbjct: 63  HLDHIGLAPASVTRCVVAVRNLHRFAVGSGQVQADVTAGMSPGTRSRRLPKALTMDQVES 122

Query: 137 LVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNI---MDDQS-TLRIQ 191
           L+       + +T  ++  R++A+L LLYG G R+SE  +L   +I   +DD    LR+ 
Sbjct: 123 LL------AAPDTSTVEGLRDAALLELLYGTGARVSEVCALDVDDIRRVLDDPDLGLRLI 176

Query: 192 GKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           GKGDK RIVPL     KA+  +       +    N +  L    RG+ L+       IR+
Sbjct: 177 GKGDKERIVPLGSYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRR 236

Query: 250 LRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                GL +   + H+LRHS+ATHLL  G D+R +Q +LGH  ++TTQIYT V +    D
Sbjct: 237 AGEAAGLDVEHLSPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVTA----D 292

Query: 309 WMMEIYDQTHP 319
            + E+Y  +HP
Sbjct: 293 HLREVYRSSHP 303


>gi|319639109|ref|ZP_07993866.1| tyrosine recombinase xerC [Neisseria mucosa C102]
 gi|317399687|gb|EFV80351.1| tyrosine recombinase xerC [Neisseria mucosa C102]
          Length = 298

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 149/300 (49%), Gaps = 25/300 (8%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS--KRRTQK-IG 84
           ++G S+ T+ +Y  D  + +  L    E  +  +          R F++  K+ +QK + 
Sbjct: 20  QQGKSQHTVSAYRRDLSELMRLLPDNLENGLPTR----------RDFVAALKKLSQKGLS 69

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           + SL R LS  + +  +L + ++       NM+  +    LP+AL ++     ++++L H
Sbjct: 70  ESSLARKLSAWRQYCSWLVQIEVMESDPTFNMKAPRLPERLPKALPQEP----LNHILDH 125

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
              + + +D R+ A+  L+YG GLR+SE   L   +I+ D+  + + GKG K R VPL  
Sbjct: 126 APVDDE-LDVRDKAMFELMYGSGLRLSEIQGLNLNSIVLDEGWVSVNGKGGKQRQVPL-- 182

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            V K+I    D     +    +  LF    G  L     Q+ ++     +G     + H 
Sbjct: 183 -VAKSIAALRDYLAVRIAKEGEQALFTNKNGGRLGQRQIQKRLQAWAVRVGSASHISPHM 241

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           +RHS+ATHLL   GD+R++Q +LGH  LS TQ+YT ++     D +  +YD+ HP   +K
Sbjct: 242 MRHSYATHLLQASGDIRAVQELLGHSNLSATQVYTKLDF----DHLARVYDEAHPRAKRK 297


>gi|331675279|ref|ZP_08376030.1| tyrosine recombinase XerC [Escherichia coli TA280]
 gi|331067565|gb|EGI38969.1| tyrosine recombinase XerC [Escherichia coli TA280]
          Length = 298

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 153/307 (49%), Gaps = 17/307 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+   RQ    + F +E    +Q+ +Q   T +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--GLQSWQQCDVTMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+       
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAAWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHP 319
           +YD  HP
Sbjct: 286 VYDAAHP 292


>gi|239502060|ref|ZP_04661370.1| tyrosine recombinase XerD [Acinetobacter baumannii AB900]
          Length = 306

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 81/240 (33%), Positives = 131/240 (54%), Gaps = 11/240 (4%)

Query: 82  KIGD--RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           K+G   RS+ R LS ++ F K+L+++K+ +++ +    + K   +LP+ L+E+    L+ 
Sbjct: 74  KVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQ 133

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              + T+     +  R+ A+  +LY CGLR+SE L+L  + I   Q  LRI GKG+K R+
Sbjct: 134 APDITTA-----LGLRDRAMFEILYACGLRVSELLNLRLELINLKQGYLRITGKGNKERL 188

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPL       +  Y +     L  +    LF    G  ++   F   I++      +   
Sbjct: 189 VPLGQYACDWVERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAE 248

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        M +++++ HP
Sbjct: 249 LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR----MQQLHEKHHP 304


>gi|329667430|gb|AEB93378.1| putative integrase/recombinase [Lactobacillus johnsonii DPC 6026]
          Length = 307

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 149/316 (47%), Gaps = 18/316 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L+K+ Q++L     ER  SK T+ SY  D    LI    +  E        Q+   ++ 
Sbjct: 7   KLIKQFQDYLN---YERNYSKNTVNSYLND----LIEAKDFFRENGGFSGWDQVKSRDVE 59

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F+    TQ     +  R +S ++SF ++L KR++     +  +        LP+   EK
Sbjct: 60  IFLQNLATQNRSRTTQARKMSSLRSFYRFLVKREVLENDPMQTISLRLGEKKLPQFFYEK 119

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   + D++  H       +  RN A+  L Y  G+R+SE  SL    I  D   + + G
Sbjct: 120 EMRQVFDSLAGHEK-----LVVRNRAMFELFYATGMRLSEMASLKLDQIDFDLKIILVHG 174

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLP-LFRGIRGKPLNPGVFQRYIRQL 250
           KG+K R VP       A+ EY D     L   N  L  +F   RG+ L     +  ++Q+
Sbjct: 175 KGNKDRYVPFGKDAASALKEYCDESRLALLGKNEDLGYVFLNNRGQKLTGRGIEYIMQQV 234

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+      H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V  K+    +
Sbjct: 235 FIKAGVGGKVHPHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKH----L 290

Query: 311 MEIYDQTHPSITQKDK 326
              Y +  P   +KD+
Sbjct: 291 QADYQKFFPRKDKKDE 306


>gi|229552209|ref|ZP_04440934.1| site-specific recombinase XerD [Lactobacillus rhamnosus LMS2-1]
 gi|229314431|gb|EEN80404.1| site-specific recombinase XerD [Lactobacillus rhamnosus LMS2-1]
          Length = 298

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 149/307 (48%), Gaps = 20/307 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +K    + + L +ER  S  T+ +Y  D ++F  FL    +         ++   +++ +
Sbjct: 1   MKPLAAFQEYLTVERQYSPETVTAYLNDIQEFQAFL----KANGGFTDFSKVDDLDVQTY 56

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQ 133
           ++    Q +   S+ R +S ++SF +YL +  +  + N   +  LKK +  LP+   E +
Sbjct: 57  LTDLNKQALARTSIARKISSLRSFYRYLVRIDVV-KRNPFELVELKKQHHHLPQFFYEAE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L   V   T      +D RN A+L +LYG G+R+SE  +LT   +  +   L I GK
Sbjct: 116 IQELFKTVEGETP-----LDQRNRALLEVLYGTGIRVSECANLTLNQVDFNTGLLLIHGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           G+K R VP     ++A+  Y        +   D        +F    G+P+     +  +
Sbjct: 171 GNKDRYVPFGRYAQRALQTYLKDGRQTLMNKHDAQHRF---VFVNQYGRPITARGIEYIL 227

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            QL +   L  +   H LRHSFATH+L +G DLR++Q +LGH  LSTTQIYT+V   +  
Sbjct: 228 DQLIKQTSLTANIHPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLK 287

Query: 308 DWMMEIY 314
           +  M+ Y
Sbjct: 288 NEYMKYY 294


>gi|108758883|ref|YP_632026.1| tyrosine recombinase XerD [Myxococcus xanthus DK 1622]
 gi|108462763|gb|ABF87948.1| tyrosine recombinase XerD [Myxococcus xanthus DK 1622]
          Length = 310

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 140/300 (46%), Gaps = 15/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  +  ERGLS  T+ +Y  D     I + F       +  + Q    ++ A +S    
Sbjct: 8   FIAFIRAERGLSGKTVDAYAAD-----INVYFEDLRSRGVSDVTQARQEDVSAHLSALGK 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +G RS  R L+ ++ F ++L   ++  +    ++   + +  LP  L  ++       
Sbjct: 63  RGLGKRSQARHLAALRGFHRFLVAERMADKDPTEDLDTPRSARKLPSFLTLEEV-----E 117

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL    E      R+ A+L +LY  GLR+SE   L   ++      L  +GKG K R+V
Sbjct: 118 QLLAAPDERTSTGVRDKAMLEVLYATGLRVSELCGLGINDVQLTAGYLVAKGKGAKERLV 177

Query: 201 PLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           PL     + +  Y  +  P  L       LF   RG       F + +++     G+   
Sbjct: 178 PLGSVAIEKVQAYLAESRPAVLGRRKSQALFVTPRGSGFTRQGFWKLLKRYALKAGILKP 237

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + H LRHSFATHL+  G DLR++Q +LGH  L+TTQIYT+VN+      +  +YD+ HP
Sbjct: 238 LSPHKLRHSFATHLVERGADLRAVQQMLGHADLATTQIYTHVNAAR----LRSVYDEFHP 293


>gi|212695398|ref|ZP_03303526.1| hypothetical protein BACDOR_04947 [Bacteroides dorei DSM 17855]
 gi|212662033|gb|EEB22607.1| hypothetical protein BACDOR_04947 [Bacteroides dorei DSM 17855]
          Length = 308

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 91/287 (31%), Positives = 141/287 (49%), Gaps = 20/287 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + Q L++E+ LS  T+ +Y  D  + L   A+ T E I I  +R      +  F +    
Sbjct: 14  YKQYLKLEKSLSDNTVDAYLTDLDKLL---AYLTLENINILDVR---LENLEDFSAGLHD 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             I  RS  R LSGI+SF ++L             + + +    LP  +  ++   L+ +
Sbjct: 68  IGIHPRSQARILSGIRSFYRFLIMEDYLESDPTELLESPQTGFKLPEVMTVEEIDLLIGS 127

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +   T         RN AIL  LY CGLR+SE  +L    +  ++  ++++GKG K R+V
Sbjct: 128 IDRGTKE-----GQRNRAILETLYSCGLRVSELCNLKLSELYFEEGFIKVEGKGSKQRLV 182

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-----GKPLNPGVFQRYIRQLRRYLG 255
           P+ P   K I  Y+     D NL    P F         GK ++  +    I++L   +G
Sbjct: 183 PISPRAIKEIRLYFT----DRNLMKIKPGFEDFVFISNFGKNISRIMVFHIIKELAERIG 238

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           L    + HT RHSFATHLL  G +LR+IQ +LGH  + TT+IYT+++
Sbjct: 239 LKKKISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHID 285


>gi|153953866|ref|YP_001394631.1| hypothetical protein CKL_1241 [Clostridium kluyveri DSM 555]
 gi|146346747|gb|EDK33283.1| XerD [Clostridium kluyveri DSM 555]
          Length = 292

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 155/301 (51%), Gaps = 20/301 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + + LE ++ +SK TL +Y  D  +F  F+      K     ++++    I A++   + 
Sbjct: 8   YAEQLE-KKHMSKNTLDAYIRDINRFYNFI------KKREGNLKEVEVVSIMAYVQYLQK 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     S+ R++  +++F KYL  + +  E+ +L     K  +++P+ L        VD 
Sbjct: 61  EGKAISSIVRNIVSLRNFYKYLMVKGVINENPLLYYEIPKVKHNIPKVLT-------VDE 113

Query: 141 V--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           V  LL +   T +   R+ A+L ++Y  G+++ E L+LT  +I    S +R +   +K R
Sbjct: 114 VDKLLDSPDSTTYKGIRDKAMLEIMYAAGMKVMELLTLTIYDIDLKFSYIRCKSLKNKER 173

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VP+     + +  Y D+ P  LN+     LF  +RG  ++   F + ++   +   +  
Sbjct: 174 LVPIGSVAVQYLKNYLDIRP-QLNIYNLDTLFLNLRGAAMSRQGFWKIVKYYAKESKIDK 232

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
              A TLRHSFA HLL NG D++S+Q +LGH  LS TQIY+ V  KN    + E+Y ++H
Sbjct: 233 DINAFTLRHSFAVHLLQNGADIKSVQELLGHKDLSATQIYSAVLKKNK---IAEVYKKSH 289

Query: 319 P 319
           P
Sbjct: 290 P 290


>gi|302338071|ref|YP_003803277.1| integrase family protein [Spirochaeta smaragdinae DSM 11293]
 gi|301635256|gb|ADK80683.1| integrase family protein [Spirochaeta smaragdinae DSM 11293]
          Length = 313

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 160/332 (48%), Gaps = 28/332 (8%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +PE    E+      +L+ L   R LS  T+ +Y  D  +F  F+    +E   ++    
Sbjct: 1   MPETEKSEIRSLVDTYLRYLVAVRTLSPRTVDAYGVDLDRFCRFV---EDEGCGLE---- 53

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           LS + +R F+++ +   +   S  R+LS I+ F +Y  K+     +   ++R   +   L
Sbjct: 54  LSPSLVRRFVAELK-DALSPASCARALSSIRGFYRYAVKQGAAVSNPFASVRGKGRERRL 112

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P  L+E +A  L+      +  E  +I  R+  ++ LLY  G R+SEA+ +   +I   +
Sbjct: 113 PEVLSEVEASELL------SFSENGFIGVRDKLLMELLYSTGARVSEAVGIDMLDIDTKK 166

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPG 241
            T+++ GKGD+ RI  L P    A+  Y     +    D    +Q  LF    G+ L   
Sbjct: 167 RTVKLLGKGDRQRIAYLGPQAMSALAAYLPYRRERVASDKKDAVQ-ALFLNAHGERLTRR 225

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                +R+ +  L        H  RHSFATHLL  G D+R++Q +LGH  LSTT IYT+V
Sbjct: 226 GAGFILRKHQERLASGKRLHPHLFRHSFATHLLDRGADIRTVQELLGHADLSTTGIYTHV 285

Query: 302 NSKNGGDWMMEIYDQTHP-----SITQKDKKN 328
           + K     + ++Y   HP     S+ +K++K+
Sbjct: 286 SLKR----LQDVYRNAHPHGSTGSVGKKEQKS 313


>gi|218706400|ref|YP_002413919.1| site-specific tyrosine recombinase XerD [Escherichia coli UMN026]
 gi|293406393|ref|ZP_06650319.1| xerD [Escherichia coli FVEC1412]
 gi|298382129|ref|ZP_06991726.1| tyrosine recombinase xerD [Escherichia coli FVEC1302]
 gi|300896210|ref|ZP_07114759.1| tyrosine recombinase XerD [Escherichia coli MS 198-1]
 gi|301027413|ref|ZP_07190750.1| tyrosine recombinase XerD [Escherichia coli MS 69-1]
 gi|218433497|emb|CAR14400.1| site-specific tyrosine recombinase [Escherichia coli UMN026]
 gi|291426399|gb|EFE99431.1| xerD [Escherichia coli FVEC1412]
 gi|298277269|gb|EFI18785.1| tyrosine recombinase xerD [Escherichia coli FVEC1302]
 gi|300359944|gb|EFJ75814.1| tyrosine recombinase XerD [Escherichia coli MS 198-1]
 gi|300394921|gb|EFJ78459.1| tyrosine recombinase XerD [Escherichia coli MS 69-1]
          Length = 298

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 155/304 (50%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +E+ L++ TL +Y  D    + +L        T Q+       +++A +++R
Sbjct: 9   EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGSTLATAQS------DDLQALLAER 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K   +    ++ + K    LP+ L+E Q   L+
Sbjct: 63  LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG+K R
Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL       +  Y +   P+ LN ++I + LF   R + +    F   I+      G+
Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292

Query: 316 QTHP 319
           Q HP
Sbjct: 293 QHHP 296


>gi|193076109|gb|ABO10716.2| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC
           17978]
          Length = 306

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/240 (33%), Positives = 130/240 (54%), Gaps = 11/240 (4%)

Query: 82  KIGD--RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           K+G   RS+ R LS ++ F K+L+++K+ +++ +    + K   +LP+ L+E+    L+ 
Sbjct: 74  KVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQ 133

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              + T+     +  R+ A+  +LY CGLR+SE L+L  + I   Q  LRI GKG+K R+
Sbjct: 134 APDITTA-----LGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERL 188

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPL       +  Y +     L  +    LF    G  ++   F   I+       +   
Sbjct: 189 VPLGQYACDWVERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKHYALQANIQAE 248

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        M +++++ HP
Sbjct: 249 LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR----MQQLHEKHHP 304


>gi|169797492|ref|YP_001715285.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE]
 gi|213155694|ref|YP_002317739.1| tyrosine recombinase XerD [Acinetobacter baumannii AB0057]
 gi|215484928|ref|YP_002327167.1| tyrosine recombinase XerD [Acinetobacter baumannii AB307-0294]
 gi|260556384|ref|ZP_05828603.1| tyrosine recombinase XerD [Acinetobacter baumannii ATCC 19606]
 gi|301346533|ref|ZP_07227274.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB056]
 gi|301512500|ref|ZP_07237737.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB058]
 gi|301594843|ref|ZP_07239851.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB059]
 gi|332851492|ref|ZP_08433489.1| tyrosine recombinase XerD [Acinetobacter baumannii 6013150]
 gi|332866808|ref|ZP_08437212.1| tyrosine recombinase XerD [Acinetobacter baumannii 6013113]
 gi|169150419|emb|CAM88316.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE]
 gi|213054854|gb|ACJ39756.1| tyrosine recombinase XerD [Acinetobacter baumannii AB0057]
 gi|213986144|gb|ACJ56443.1| tyrosine recombinase XerD [Acinetobacter baumannii AB307-0294]
 gi|260410439|gb|EEX03738.1| tyrosine recombinase XerD [Acinetobacter baumannii ATCC 19606]
 gi|332729945|gb|EGJ61276.1| tyrosine recombinase XerD [Acinetobacter baumannii 6013150]
 gi|332734416|gb|EGJ65536.1| tyrosine recombinase XerD [Acinetobacter baumannii 6013113]
          Length = 306

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/240 (33%), Positives = 131/240 (54%), Gaps = 11/240 (4%)

Query: 82  KIGD--RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           K+G   RS+ R LS ++ F K+L+++K+ +++ +    + K   +LP+ L+E+    L+ 
Sbjct: 74  KVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQ 133

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              + T+     +  R+ A+  +LY CGLR+SE L+L  + I   Q  LRI GKG+K R+
Sbjct: 134 APDITTA-----LGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERL 188

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPL       +  Y +     L  +    LF    G  ++   F   I++      +   
Sbjct: 189 VPLGQYACDWVERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAE 248

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        M +++++ HP
Sbjct: 249 LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR----MQQLHEKHHP 304


>gi|325674273|ref|ZP_08153962.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707]
 gi|325554953|gb|EGD24626.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707]
          Length = 309

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 145/308 (47%), Gaps = 17/308 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L +L +ERG ++ TL SY  D  ++  FL     E      +R ++ T++  F+   
Sbjct: 9   DSYLDHLAVERGAARNTLTSYRRDLDRYARFL-----EARGTDDVRSVTETDVSEFVVAL 63

Query: 79  R-------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           R          +   S  R+L  ++   ++     +T+      ++       LP++L  
Sbjct: 64  RKGDPAEGVVALAPSSAARALIAVRGLHRFAAAEGVTSGDVARAVKPPTPGRRLPKSLPL 123

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
              L +++      S +      R+ A+L LLY  G RISEA+ L   ++     ++ ++
Sbjct: 124 DDVLAILEASGGDGSADNPRT-LRDRALLELLYSTGARISEAVGLDVDDLDTQSRSVLLR 182

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG K R+VP+      AI  Y       L++     LF  +RG  L+     + +    
Sbjct: 183 GKGGKERVVPVGRPAITAIDNYLVRGRPALSVRGGPALFLNVRGGRLSRQSAWQVLHTAA 242

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+ ++ + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V        + 
Sbjct: 243 EKAGIAVAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVGA----LR 298

Query: 312 EIYDQTHP 319
           E++ Q HP
Sbjct: 299 EVWAQAHP 306


>gi|261250247|ref|ZP_05942823.1| site-specific recombinase XerD [Vibrio orientalis CIP 102891]
 gi|260939363|gb|EEX95349.1| site-specific recombinase XerD [Vibrio orientalis CIP 102891]
          Length = 302

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 155/305 (50%), Gaps = 21/305 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF--YTEEKITIQTIRQLSYTEIRAFIS 76
           + +L  + +ERGLS+ TL SY  D  + L +++   Y  + I++  ++     E +A++ 
Sbjct: 13  EQFLDAMWMERGLSENTLASYRTDLVKLLRWMSTNNYKLDFISLSGLQ-----EYQAWLV 67

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               ++    S  R LS I+   +YL + K+  +     + + K    LP+ L+E+Q   
Sbjct: 68  DEGYKQT---SRARMLSAIRRLFQYLHREKVRGDDPSALLVSPKLPKRLPKDLSEEQV-- 122

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
              + LL        ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG K
Sbjct: 123 ---DALLDAPDPNDAMELRDKAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGGK 179

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R+VP+  +    I  +      +L        +F   R + +    F   I+      G
Sbjct: 180 ERLVPMGENAVDWIETFLQQGRSELLGETTSDVVFPSKRARQMTRQTFWHRIKHYAVVAG 239

Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           +     + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +++
Sbjct: 240 IDTEQLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLH 295

Query: 315 DQTHP 319
            + HP
Sbjct: 296 SEHHP 300


>gi|257453686|ref|ZP_05618973.1| tyrosine recombinase XerC [Enhydrobacter aerosaccus SK60]
 gi|257448920|gb|EEV23876.1| tyrosine recombinase XerC [Enhydrobacter aerosaccus SK60]
          Length = 345

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 99/303 (32%), Positives = 154/303 (50%), Gaps = 19/303 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFL-IFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           WL  L  +R  S  T++SY    RQ L  FLA+  E+   +  I +   ++    I +  
Sbjct: 54  WLAELSNKR-YSAATIKSY----RQALQPFLAYCYEQHTELCHITRQQLSDF--LIRRLD 106

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
             KI   S +  L+ ++   K+L  +++ T +    +R  +    LP  L+      L+D
Sbjct: 107 VDKISKSSSQYELTVLRQLYKWLIVQQLMTLNPTTTIRLKRAPRPLPTLLDIDVLSQLLD 166

Query: 140 NVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                 SHE + WI  R+ A+L LLYG GLR+ E + L   +I   Q  LR+ GKG K R
Sbjct: 167 QAAPEDSHEARLWI--RDKAMLELLYGSGLRVGELVGLNMSDIDKSQRLLRVLGKGGKTR 224

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIR-GKPLNPGVFQRYIRQLRRYLGL 256
           IVP+     +A++ Y  L    L +  Q P +F   R G  ++    Q  I+   +  G+
Sbjct: 225 IVPIGEKAWQALINY--LPHRSLWVEEQDPAVFVSERYGTRISTRTVQLRIKLQAKRAGV 282

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRH FA+H+LS+ GDLR +Q +LGH  +STTQIYT+++  +    + ++YD+
Sbjct: 283 AQDLYPHLLRHCFASHILSDSGDLRGVQELLGHSDISTTQIYTHLDFGH----LSQVYDK 338

Query: 317 THP 319
            HP
Sbjct: 339 AHP 341


>gi|261343068|ref|ZP_05970926.1| tyrosine recombinase XerC [Enterobacter cancerogenus ATCC 35316]
 gi|288314633|gb|EFC53571.1| tyrosine recombinase XerC [Enterobacter cancerogenus ATCC 35316]
          Length = 300

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/299 (30%), Positives = 149/299 (49%), Gaps = 19/299 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L +ER LS +TL +Y+   RQ    +    E  I +++ +Q     +R F+ + R +
Sbjct: 14  LRYLGVERQLSPVTLLNYQ---RQLDAIMQIADE--IGLKSWQQCDAATVRGFVVRSRKK 68

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
           K+   SL   LS ++SF  +L  + +   +    +   K    LP+ ++      L+D  
Sbjct: 69  KLSPASLALRLSALRSFFDWLVSQGVLKANPAKGIATPKAPRHLPKNIDVDDVNRLLDID 128

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           L         +  R+ A+L ++YG GLR+SE ++L  +++  +   + + GKG K R +P
Sbjct: 129 L------NDPLAVRDRAMLEVMYGAGLRLSELVNLDLKHLDLESGEVWVMGKGSKERRLP 182

Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +  +    I  + DL   F    N    LF    GK ++    Q+   +     GL    
Sbjct: 183 IGRNAVSWIEHWLDLRGLFGAEEN---ALFLSKLGKRISARNVQKRFAEWGIKQGLNSHV 239

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
             H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  +YD  HP
Sbjct: 240 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 294


>gi|296394928|ref|YP_003659812.1| tyrosine recombinase XerD [Segniliparus rotundus DSM 44985]
 gi|296182075|gb|ADG98981.1| tyrosine recombinase XerD [Segniliparus rotundus DSM 44985]
          Length = 306

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 145/317 (45%), Gaps = 34/317 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L +L +ERG SK T  SY  D  ++  FL      + ++  + Q++  ++  F++  
Sbjct: 6   QQYLDHLAVERGASKHTTASYRRDLGRYADFL-----RQRSVADLAQVTSAQVAEFLAWS 60

Query: 79  RTQK---IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           R      +   S  R LS ++   ++     +  +     ++  +    LP+AL   Q +
Sbjct: 61  RDPAGMGLAQSSAARGLSAVRGLHRFAVLEGMVAQDVAHGVKPPQPGRRLPKALPVDQVI 120

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            +++   +  +        R+ A+L L+Y  G R+SEA+ L   ++     + R+ GKGD
Sbjct: 121 AILEASGIADAESDVPRALRDQALLELMYCTGCRVSEAVGLNLADVDVPSRSARVLGKGD 180

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF-----QRYIRQ- 249
           K R+VPL  +   A+  Y         L    P F   R       +F      R+ RQ 
Sbjct: 181 KERLVPLGSAALAAVEAY---------LVRGRPAFLAQRAGKATNALFLNARGARFSRQS 231

Query: 250 ----LRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               LR      G+    + HTLRHS ATHLL  G D+R +Q +LGH  + TTQIYT V+
Sbjct: 232 AWASLRHAAAKAGVQAEISPHTLRHSCATHLLEGGADVRVVQELLGHASVVTTQIYTMVS 291

Query: 303 SKNGGDWMMEIYDQTHP 319
           +      + E+Y   HP
Sbjct: 292 ATT----LREVYATAHP 304


>gi|168467636|ref|ZP_02701473.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195629975|gb|EDX48635.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 300

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 149/298 (50%), Gaps = 17/298 (5%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L +ER LS +TLQ+Y+   RQ    +A   E    +++ +Q     +R+F  + R +
Sbjct: 14  LRYLGVERQLSPITLQNYQ---RQLDAIIALAGE--TGLKSWQQCDAAIVRSFAVRSRRK 68

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++      L+D  
Sbjct: 69  GLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDID 128

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           L         +  R+ A+L ++YG GLR+SE + L  +++  D   + + GKG K R +P
Sbjct: 129 L------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLP 182

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           +  +    I  + DL    L  + +  LF    GK ++    Q+   +     GL     
Sbjct: 183 IGRNAVTWIEHWLDLR--GLFASDEEALFLSKLGKRISVRNVQKRFAEWGIKQGLNSHVH 240

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  +YD  HP
Sbjct: 241 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 294


>gi|311693141|gb|ADP96014.1| site-specific tyrosine recombinase XerC [marine bacterium HP15]
          Length = 310

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/312 (28%), Positives = 152/312 (48%), Gaps = 26/312 (8%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA---FYTEEKITIQTIRQLSYT 69
           EL      ++++L  E+  S  T  SY  D  +   +L    F   +++T   +R+    
Sbjct: 4   ELTGPLAEFIRHLASEKRHSPRTCDSYHRDLLRLADWLGRSGFVAWQRVTNHDLRR---- 59

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
               +++    + +  RS+ R LS  + F ++L + K+ +++  L++R  K    LPR  
Sbjct: 60  ----YVATLSREGLSGRSIARHLSATRRFYQFLLREKLASDNPALDIRAPKSGRRLPRVA 115

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  Q   L+D            ++ R+  +  L+Y  GLR++E  SL    +      +R
Sbjct: 116 DVDQLNHLLDG------QPDDPLEVRDLCMFELMYSSGLRLAELASLDLDTVDVRSGEVR 169

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYI 247
           + GKG K R   LLP  RKAI       P+   L  + +  LF   RG+ L+    Q  +
Sbjct: 170 VMGKGGKER---LLPVGRKAIAAIQAWVPYRAALANDGEAALFVSQRGERLSHRSIQARL 226

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +     G       H LRHSFA+H+L + GDLR++Q +LGH  ++TTQ+YT+++ ++  
Sbjct: 227 SRWGISRGADQKLHPHLLRHSFASHMLESSGDLRAVQELLGHADIATTQVYTHLDFQH-- 284

Query: 308 DWMMEIYDQTHP 319
             +  +YDQ+HP
Sbjct: 285 --LARVYDQSHP 294


>gi|193068085|ref|ZP_03049050.1| tyrosine recombinase XerC [Escherichia coli E110019]
 gi|192958705|gb|EDV89143.1| tyrosine recombinase XerC [Escherichia coli E110019]
          Length = 298

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 154/307 (50%), Gaps = 17/307 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+   RQ    + F +E    +Q+ +Q   T +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--GLQSWQQCDVTMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGTGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGCKERRLPIGRNAVAWIEHWLDL--RDLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHP 319
           +YD  HP
Sbjct: 286 VYDAAHP 292


>gi|288573040|ref|ZP_06391397.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288568781|gb|EFC90338.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 263

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 139/276 (50%), Gaps = 22/276 (7%)

Query: 45  QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK 104
           QF  FL     E   +  +  ++  EIRAF+           S+ R LS IKS +KYL +
Sbjct: 3   QFAEFL-----ETQGVSDVSDIATGEIRAFVRSLSGYGFAPASVGRKLSAIKSLMKYLFE 57

Query: 105 RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLY 164
            ++  +     +R  ++S+ LPRA++ +Q   ++D      +++      RN A++ LLY
Sbjct: 58  ERVIEKDPSGRVRGPRRSDRLPRAMSVEQVSRMID-----CAYDDDEQGLRNGALIELLY 112

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNL 223
           GCGLR++E +S+  +++  ++  L++ GKG K R VP     ++A+     L  P D  +
Sbjct: 113 GCGLRVAEVVSVRWEDVEIEERWLKVMGKGSKERAVPFGSMAQRALTGLRALSMPGDEYV 172

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                 F G +   L      R +       G+    T H+LRHSFATHLL  G  LR +
Sbjct: 173 ------FPGKKRGCLTVRTVHRVVVAAAAKAGVN-GVTPHSLRHSFATHLLEGGASLRVV 225

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           Q +LGH  L+TTQ Y  + +++    + + Y+  HP
Sbjct: 226 QELLGHEHLTTTQRYLRITAQH----LKKSYESAHP 257


>gi|299137336|ref|ZP_07030518.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
 gi|298600741|gb|EFI56897.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
          Length = 320

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/318 (31%), Positives = 150/318 (47%), Gaps = 28/318 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  +  ERG S+ TL++Y  + R F  FL     E   I   R + +T IRA+++  
Sbjct: 11  ESFLAMMRDERGASEHTLRAYSREVRGFADFLGELLGEDADI---RSVEHTHIRAYLAVL 67

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   S  R+L+ ++S+ K+L K          N  +L  +  LP+ L     +  +
Sbjct: 68  YDKGLTKASAARALAAVRSWFKWLAKSGFVEA----NPASLVSTPKLPKHLPRVPGMEEL 123

Query: 139 DNVLLHTSHETKWIDARNSA--------ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           + VL   S  TK  D   +A        I  LLYGCG+R SE + L  ++I      +R+
Sbjct: 124 NRVLNSMSAGTKGEDGEEAATWPERDRVIFELLYGCGIRNSELVGLNLESIHWHDDAIRV 183

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG--------IRGKP-LNPG 241
            GKG K R+VPL      AI  Y       L    +  L           +RG   L   
Sbjct: 184 FGKGKKERLVPLGDEAAAAIRAYLPQRQARLEAAGKAKLVHDGALLMNLRMRGACRLTTR 243

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              R ++++    GL      HTLRH+F TH+L  G DLR+IQ +LGH RLSTTQ YT +
Sbjct: 244 SVGRIVKRIALSRGLAADVHPHTLRHAFGTHMLEEGADLRAIQEMLGHERLSTTQRYTQL 303

Query: 302 NSKNGGDWMMEIYDQTHP 319
                   +  +Y++THP
Sbjct: 304 TVGQ----VQRVYEETHP 317


>gi|219854481|ref|YP_002471603.1| hypothetical protein CKR_1138 [Clostridium kluyveri NBRC 12016]
 gi|219568205|dbj|BAH06189.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 295

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 155/301 (51%), Gaps = 20/301 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + + LE ++ +SK TL +Y  D  +F  F+      K     ++++    I A++   + 
Sbjct: 11  YAEQLE-KKHMSKNTLDAYIRDINRFYNFI------KKREGNLKEVEVVSIMAYVQYLQK 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     S+ R++  +++F KYL  + +  E+ +L     K  +++P+ L        VD 
Sbjct: 64  EGKAISSIVRNIVSLRNFYKYLMVKGVINENPLLYYEIPKVKHNIPKVLT-------VDE 116

Query: 141 V--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           V  LL +   T +   R+ A+L ++Y  G+++ E L+LT  +I    S +R +   +K R
Sbjct: 117 VDKLLDSPDSTTYKGIRDKAMLEIMYAAGMKVMELLTLTIYDIDLKFSYIRCKSLKNKER 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VP+     + +  Y D+ P  LN+     LF  +RG  ++   F + ++   +   +  
Sbjct: 177 LVPIGSVAVQYLKNYLDIRP-QLNIYNLDTLFLNLRGAAMSRQGFWKIVKYYAKESKIDK 235

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
              A TLRHSFA HLL NG D++S+Q +LGH  LS TQIY+ V  KN    + E+Y ++H
Sbjct: 236 DINAFTLRHSFAVHLLQNGADIKSVQELLGHKDLSATQIYSAVLKKNK---IAEVYKKSH 292

Query: 319 P 319
           P
Sbjct: 293 P 293


>gi|196230590|ref|ZP_03129452.1| integrase family protein [Chthoniobacter flavus Ellin428]
 gi|196225520|gb|EDY20028.1| integrase family protein [Chthoniobacter flavus Ellin428]
          Length = 315

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 99/325 (30%), Positives = 164/325 (50%), Gaps = 42/325 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY----------------TEEKITIQT 62
           ++++  L  ERGLS    ++Y+  TR  L   A +                 EE+ T+  
Sbjct: 6   EDFILYLATERGLS----ENYQLSTRLSLEGFARWLEKRNAGKEAESKDPLGEEEETLPE 61

Query: 63  IR--QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           +   ++++ +I  +++ ++   +   S+K  +  +K F ++L  RK   E ++  +  L 
Sbjct: 62  VAPGEVTHQQITDYLAHKKRLGLSAASIKLIVVALKIFFRWLHARK-RIERDVAEVLPLP 120

Query: 121 KSNS-LPRALNEKQALTLVDNVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALS 175
           ++   LP  +NE Q    VD +L   S     IDA    R+ A+L LLY  GLR+SE ++
Sbjct: 121 RTERYLPETMNELQ----VDRLLEGIS-----IDAPRGLRDRALLELLYASGLRVSELVN 171

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIR 234
              +N+  D   +R+ GKG+K+R+VP+      AI  Y +   P  +       +F   R
Sbjct: 172 ARLENLDLDARIIRVTGKGNKMRLVPVGQKACDAIRAYLEKERPEMVGKKTGSEVFLSSR 231

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G  L      + ++   +  GL ++   H LRHSFATHLLSNG DLR IQ +LGH  +ST
Sbjct: 232 GTKLTTVRIWQIVKACAKNAGLDINVYPHLLRHSFATHLLSNGADLRIIQEMLGHADIST 291

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHP 319
           TQIYT+V+ +     +  ++ + HP
Sbjct: 292 TQIYTHVDQQR----LKAVHHRFHP 312


>gi|237711564|ref|ZP_04542045.1| integrase [Bacteroides sp. 9_1_42FAA]
 gi|237725982|ref|ZP_04556463.1| integrase [Bacteroides sp. D4]
 gi|265752992|ref|ZP_06088561.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_33FAA]
 gi|229435790|gb|EEO45867.1| integrase [Bacteroides dorei 5_1_36/D4]
 gi|229454259|gb|EEO59980.1| integrase [Bacteroides sp. 9_1_42FAA]
 gi|263236178|gb|EEZ21673.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_33FAA]
          Length = 308

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/287 (31%), Positives = 141/287 (49%), Gaps = 20/287 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + Q L++E+ LS  T+ +Y  D  + L   A+ T E I I  +R      +  F +    
Sbjct: 14  YRQYLKLEKSLSDNTVDAYLTDLDKLL---AYLTLENINILDVR---LENLEDFSAGLHD 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             I  RS  R LSGI+SF ++L             + + +    LP  +  ++   L+ +
Sbjct: 68  IGIHPRSQARILSGIRSFYRFLIMEDYLESDPTELLESPQTGFKLPEVMTVEEIDLLIGS 127

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +   T         RN AIL  LY CGLR+SE  +L    +  ++  ++++GKG K R+V
Sbjct: 128 IDRGTKE-----GQRNRAILETLYSCGLRVSELCNLKLSELYFEEGFIKVEGKGSKQRLV 182

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-----GKPLNPGVFQRYIRQLRRYLG 255
           P+ P   K I  Y+     D NL    P F         GK ++  +    I++L   +G
Sbjct: 183 PISPRAIKEIRLYFT----DRNLMKIKPGFEDFVFISNFGKNISRIMVFHIIKELAERIG 238

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           L    + HT RHSFATHLL  G +LR+IQ +LGH  + TT+IYT+++
Sbjct: 239 LKKKISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHID 285


>gi|224824183|ref|ZP_03697291.1| tyrosine recombinase XerC [Lutiella nitroferrum 2002]
 gi|224603602|gb|EEG09777.1| tyrosine recombinase XerC [Lutiella nitroferrum 2002]
          Length = 323

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 152/316 (48%), Gaps = 22/316 (6%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
            ++P   S+E  +    + Q+L++  G S  T  +Y  D +             +T Q I
Sbjct: 15  QSVPSSTSWE--QRIAGYDQSLQLA-GKSPHTRSAYRRDLQALAALQGAQDPATLTAQQI 71

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           R L+   + A         IG RSL R LS  + F  +L +++    +    +R  K   
Sbjct: 72  R-LAVARLHA------KGHIG-RSLARMLSAWRGFFDWLIEQEKLPANPCHGIRPPKSPK 123

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           +LP+AL       L+D  +         +  R+ A+  LLY CGLR+SE   L   ++  
Sbjct: 124 TLPKALPVDATSALLDAPI----DPEDDLALRDQAMFELLYSCGLRLSELTGLDLADLDL 179

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
            +  L   GKG+K RI+P+    R+A+  +  + P          +F G  G+ L+    
Sbjct: 180 GEGLLTAHGKGNKTRILPIGRQARQALERWLAIRPSQPGEGA---VFTGKSGRRLSGRQV 236

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           ++ + Q  +  G       H LRHSFA+HLL + GDLR++Q +LGH  LSTTQIYT+++ 
Sbjct: 237 EKRLEQWAQRHGSDRHVHPHMLRHSFASHLLQSSGDLRAVQELLGHANLSTTQIYTSLDF 296

Query: 304 KNGGDWMMEIYDQTHP 319
           ++    + ++YD THP
Sbjct: 297 QH----LAKVYDATHP 308


>gi|313771918|gb|EFS37884.1| tyrosine recombinase XerD [Propionibacterium acnes HL074PA1]
          Length = 306

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/311 (30%), Positives = 158/311 (50%), Gaps = 27/311 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L++L +ERGLS  T+Q+Y  D  ++  +L         I ++ +++  ++  F  +R
Sbjct: 10  EDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLGSRG-----IGSLAEVTRVDVEEF--RR 62

Query: 79  RTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               IG    S+ R +  +++  ++              M    +S  LP+AL+  Q  +
Sbjct: 63  HLDHIGLAPASVTRCVVAVRNLHRFAVGSGQLQADVTAGMSPGTRSRRLPKALSMDQVES 122

Query: 137 LVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNI---MDDQS-TLRIQ 191
           L+       + +T  ++  R++A+L LLYG G R+SE  +L   +I   +DD    LR+ 
Sbjct: 123 LL------AAPDTSTVEGLRDAALLELLYGTGARVSEVCALDVDDIRPVLDDPDLGLRLI 176

Query: 192 GKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           GKGDK RIVPL     KA+  +       +    N +  L    RG+ L+       IR+
Sbjct: 177 GKGDKERIVPLGSYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRR 236

Query: 250 LRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                GL +   + H+LRHS+ATHLL  G D+R +Q +LGH  ++TTQIYT V +    D
Sbjct: 237 AGEAAGLDVEHLSPHSLRHSYATHLLDGGADIRVVQELLGHSSVTTTQIYTLVTA----D 292

Query: 309 WMMEIYDQTHP 319
            + E+Y  +HP
Sbjct: 293 HLREVYRSSHP 303


>gi|283852933|ref|ZP_06370193.1| tyrosine recombinase XerD [Desulfovibrio sp. FW1012B]
 gi|283571691|gb|EFC19691.1| tyrosine recombinase XerD [Desulfovibrio sp. FW1012B]
          Length = 309

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 144/301 (47%), Gaps = 20/301 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE--EKITIQTIRQLSYTEIRAFISKR 78
           +L++L + +GL++ ++ +Y  D   FLIFL  +    E +T  T+          ++   
Sbjct: 19  YLEHLIVAKGLAEHSIAAYSTDITSFLIFLNSHAAALETVTDDTLFL--------YLMHL 70

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           RT+ +  RSL R LS ++ F  +    K   ES    + N K    LP  L+ +    L+
Sbjct: 71  RTRGLQSRSLARHLSALRGFFAFAAAEKWLPESPAALIENPKLPRLLPDVLSREDVARLL 130

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D     T      +  R+  +L LLY  GLR+SE + LT  +       LR+ GKG K R
Sbjct: 131 DAPDTATP-----LGYRDRTMLELLYAAGLRVSELVGLTLGDYDAQAGLLRVFGKGAKER 185

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           + P+    R+ +  Y        +   Q  +F    G+ L+     + I+      G+  
Sbjct: 186 LTPIHALAREFLSTYILTMRGAFHPREQF-IFLNRSGQGLSRQAVWKKIKAHALAAGVST 244

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H+LRHSFATHLL  G DLR++Q +LGH  +S T+IYT+V +      ++ ++   H
Sbjct: 245 RISPHSLRHSFATHLLEGGADLRTVQMLLGHADISATEIYTHVQAGR----LLAVHRAHH 300

Query: 319 P 319
           P
Sbjct: 301 P 301


>gi|198244691|ref|YP_002217878.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205354490|ref|YP_002228291.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207859151|ref|YP_002245802.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|197939207|gb|ACH76540.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|205274271|emb|CAR39290.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206710954|emb|CAR35322.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326625666|gb|EGE32011.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326629624|gb|EGE35967.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 300

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 154/311 (49%), Gaps = 17/311 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +    L ++   +L+ L +ER LS +T+Q+Y+   RQ    +A   E    +++ +Q   
Sbjct: 1   MTDVALSQDVSRFLRYLGVERQLSPITVQNYQ---RQLDAIIALAGE--TGLKSWQQCDA 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R+F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ 
Sbjct: 56  AIVRSFAVRSRRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKN 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++      L+D  L         +  R+ A+L ++YG GLR+SE + L  +++  D   +
Sbjct: 116 IDVDDVNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEV 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +P+  +    I  + DL    L  + +  LF    GK ++    Q+   
Sbjct: 170 WVMGKGSKERRLPIGRNAVTWIEHWLDLR--GLFASDEEALFLSKLGKRISARNVQKRFA 227

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++   
Sbjct: 228 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 284

Query: 309 WMMEIYDQTHP 319
            +  +YD  HP
Sbjct: 285 -LASVYDAAHP 294


>gi|317046395|ref|YP_004114043.1| tyrosine recombinase XerC [Pantoea sp. At-9b]
 gi|316948012|gb|ADU67487.1| tyrosine recombinase XerC [Pantoea sp. At-9b]
          Length = 302

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 154/307 (50%), Gaps = 19/307 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL   + +L+ L++ER LS LT Q+Y    RQ    +    E KIT  T  QL   ++R 
Sbjct: 7   LLPAVEGFLRYLKVERQLSPLTQQNY---ARQLQAIITMADEMKITAWT--QLEPAQVRN 61

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             ++ R   +G  SL   LS ++SFL +   + + + +    +   + +  LP+ ++  +
Sbjct: 62  IAARSRRAGLGASSLALRLSALRSFLDWQVSQDMLSGNPAKGIATPRNARHLPKNMDVDE 121

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++  L         +  R+ A+L  +YG GLR+SE +++  +++  +   + + GK
Sbjct: 122 VNQLLEIDL------NDPLAVRDRAMLETMYGGGLRLSELVNMDLRHLDLEAGEVWVLGK 175

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K R VP+  +   A+       P   +   Q   +F   RG  ++    Q+   +   
Sbjct: 176 GSKERRVPIGGT---AVTWLQHWLPLRASFAPQDDAVFVSSRGSRISARNVQKRFAEWGI 232

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+      H LRHSFATHLL + GDLR++Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 233 KQGVASHIHPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LAS 288

Query: 313 IYDQTHP 319
           +YD  HP
Sbjct: 289 VYDSAHP 295


>gi|256824962|ref|YP_003148922.1| site-specific recombinase XerD [Kytococcus sedentarius DSM 20547]
 gi|256688355|gb|ACV06157.1| site-specific recombinase XerD [Kytococcus sedentarius DSM 20547]
          Length = 336

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 167/350 (47%), Gaps = 65/350 (18%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL+E + +  +L +ERG S  T+++Y  D    L  LA + E     +  RQ++ +++R+
Sbjct: 6   LLREVEGFADHLLLERGRSPHTVRAYTAD----LTALAEHLEAAGATE-WRQVTLSDLRS 60

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRAL 129
           F ++R    +   +L R  +  ++F  ++    + TE  +++    + + +    LP  L
Sbjct: 61  FAARRAAAGLARSTLARGTASQRTFFGWM----VATERLVVDPSARLVSPRVEKRLPAVL 116

Query: 130 NEKQALTLV--------------------------------------DNVLLHTSHETKW 151
             +QA  LV                                      D V L T      
Sbjct: 117 RAEQAAQLVEGGGTRPEPRATGGAGDPGGDTQTDTDTDTDAAPGTEADPVSLAT------ 170

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL-LPSVRKAI 210
            D R+ A+L LLY  G+R+ E +SL    +     T+R+ GKG K R+VP  +P++R A+
Sbjct: 171 -DLRDRAVLELLYATGIRVGELVSLDTGAVSLQDHTVRVWGKGSKERVVPFGVPALR-AL 228

Query: 211 LEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
            E+ +   P  L       LF G+RG  ++P   +R + +  + +        H LRHS 
Sbjct: 229 EEWVHQGRPELLGARSGEALFLGVRGGRIDPREVRRVVHRAAQRVEGAADIGPHGLRHSA 288

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           ATH++  G D+RS+Q +LGH  L+TTQ+YT+V+ +     + E +D++HP
Sbjct: 289 ATHMVDAGADIRSVQELLGHASLATTQVYTHVSVER----LREAFDRSHP 334


>gi|146281579|ref|YP_001171732.1| site-specific tyrosine recombinase XerD [Pseudomonas stutzeri
           A1501]
 gi|145569784|gb|ABP78890.1| integrase/recombinase XerD [Pseudomonas stutzeri A1501]
          Length = 298

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/307 (30%), Positives = 145/307 (47%), Gaps = 30/307 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +E+GL+  + ++Y  D   F  +L    E  + +          I   ++ R  
Sbjct: 12  YLDALWLEKGLADNSREAYRNDLASFNGWL---QERGVRLAAA---GREVILDHLAWRLN 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                RS  R LSG++ F +YL +    +    L +   +    LP+AL+E         
Sbjct: 66  NGYKARSTARFLSGLRGFYRYLLREGEISLDPTLRVDLPRLGRPLPKALSEADV-----E 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL        +  R+ A+L +LY CGLR++E +SLT + +   Q  LR  GKG+K R+V
Sbjct: 121 ALLAAPDTGDPLGLRDRAMLEVLYACGLRVTELISLTLEQVSMRQGVLRTFGKGNKERLV 180

Query: 201 PLLPSV--------RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           PL            R A  +     P D+       LF   RG+ +    F   I+   R
Sbjct: 181 PLGEEALHWLQRYQRDARDQLLAGRPSDV-------LFPSQRGEQMTRQTFWHRIKLHAR 233

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    + HTLRH+FATHLL++G DLR++Q +LGH  LSTTQIYT++        + E
Sbjct: 234 GAGIATGISPHTLRHAFATHLLNHGADLRTVQMLLGHSDLSTTQIYTHIARAR----LQE 289

Query: 313 IYDQTHP 319
           ++   HP
Sbjct: 290 LHATHHP 296


>gi|262376987|ref|ZP_06070213.1| tyrosine recombinase XerD [Acinetobacter lwoffii SH145]
 gi|262308025|gb|EEY89162.1| tyrosine recombinase XerD [Acinetobacter lwoffii SH145]
          Length = 305

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/239 (32%), Positives = 128/239 (53%), Gaps = 9/239 (3%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q+   RS+ R LS ++SF K+L+++K+ +++ +   +  K   +LP+ L+E         
Sbjct: 74  QQKSPRSIARCLSALRSFYKFLREQKLRSDNPVAAHKTPKLGRALPKDLSEADV-----E 128

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            L+H       +  R+ A+  +LY CGLR++E ++L  + I   Q  LRI GKG+K R++
Sbjct: 129 ALIHAPDINTALGLRDRAMFEVLYACGLRVTELINLRLELINLKQGYLRIVGKGNKERLI 188

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+     + + +Y +     L       LF    G  ++   F   I++     G+    
Sbjct: 189 PMGQMACEWVEKYLNEARPQLYKTSTDYLFLTQHGGIMSRQNFWYAIKRYALQAGIQSEL 248

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        M +++   HP
Sbjct: 249 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR----MQQLHATHHP 303


>gi|85059971|ref|YP_455673.1| site-specific tyrosine recombinase XerD [Sodalis glossinidius str.
           'morsitans']
 gi|84780491|dbj|BAE75268.1| phage integrase [Sodalis glossinidius str. 'morsitans']
          Length = 299

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/307 (31%), Positives = 147/307 (47%), Gaps = 25/307 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L +L +ER L++ TL SY  D +    +L     + +        S  +++AF++ R
Sbjct: 10  EQFLDSLWLERNLAENTLASYRLDLQALSAWLQSQQRDSLNA------SSADLQAFLADR 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS  + F +YL + K         +   K    LP+ L+E Q     
Sbjct: 64  LDHGYKATSSARLLSATRRFFQYLYREKRRGNDPSAGISAPKLPQRLPKDLSEAQV---- 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL        ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKGDK R
Sbjct: 120 -GDLLAAPAIADPVELRDKAMLEVLYATGLRVSELVGLTLSDVSLRQGVVRVIGKGDKER 178

Query: 199 IVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +VPL       I EYY            +L+I   LF   R + +    F   I+     
Sbjct: 179 LVPLGEEAVYWI-EYYLEHGRPALTHGQSLDI---LFPSNRSRKMTRQTFWHRIKHYAIL 234

Query: 254 LGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  
Sbjct: 235 AGIDSERLSPHVLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATER----LKL 290

Query: 313 IYDQTHP 319
           I+ Q HP
Sbjct: 291 IHQQHHP 297


>gi|157144439|ref|YP_001451758.1| site-specific tyrosine recombinase XerC [Citrobacter koseri ATCC
           BAA-895]
 gi|157081644|gb|ABV11322.1| hypothetical protein CKO_00153 [Citrobacter koseri ATCC BAA-895]
          Length = 300

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/311 (29%), Positives = 152/311 (48%), Gaps = 17/311 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +    L ++   +L+ L +ER LS +TL +Y+   RQ    +A   E    +Q+ +Q   
Sbjct: 1   MTELSLSQDVARFLRYLGVERQLSPITLLNYQ---RQLDAIIALAGE--TGLQSWQQCDA 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +RAF  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ 
Sbjct: 56  AMVRAFAVRSRRKGLGPASLALRLSALRSFFDWLVSQGELNANPAKGVSAPKAPRHLPKN 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++      L+D  L         +  R+ A+L ++YG GLR+SE + L  +++  D   +
Sbjct: 116 IDVDDINRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEV 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +P+  +    I  + DL    L  +    LF    GK ++    Q+   
Sbjct: 170 WVMGKGSKERRLPIGRNAVAWIEHWLDLR--GLFGSDDDALFLSKLGKRISARNVQKRFA 227

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++   
Sbjct: 228 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 284

Query: 309 WMMEIYDQTHP 319
            +  +YD  HP
Sbjct: 285 -LASVYDAAHP 294


>gi|119026081|ref|YP_909926.1| site-specific tyrosine recombinase XerC [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765665|dbj|BAF39844.1| probable integrase [Bifidobacterium adolescentis ATCC 15703]
          Length = 329

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 149/291 (51%), Gaps = 24/291 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L+  RGLS  T ++Y  D  + L+ L      K     + +++  ++R ++++  ++   
Sbjct: 35  LKANRGLSANTRRAYRSDVEECLVAL-----RKQGCVDLNEVTIEDLRLWMAES-SKNHA 88

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--- 141
             S+ R    ++ F  +     + + +   +++  K  ++LP  LNE QA  L+D V   
Sbjct: 89  RSSMARKTVAVRGFFAWAYDHDMASANPAASLQTPKIPDTLPAVLNETQAQQLMDRVDED 148

Query: 142 -LLHTSHE----TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
            +   S E     + I  R++A+L LLY  G+R++E + L   ++     T+++ GKGDK
Sbjct: 149 GMEARSQEPNMKKQAIALRDAAMLELLYATGMRVAELVGLDVADVTFGNRTVKVTGKGDK 208

Query: 197 IRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            R++P      KA+ ++ +     LC  D++ +     F G +G  ++  + ++ +    
Sbjct: 209 QRVMPFGAPADKALRDWLEHGRPVLCG-DMSDDA---FFLGSQGGRIDQRMVRKVVHDRA 264

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           R  G+P   + H LRHS ATH+L  G DLR +Q +LGH  L TTQ YT+V+
Sbjct: 265 REAGVP-DISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVS 314


>gi|218550141|ref|YP_002383932.1| site-specific tyrosine recombinase XerD [Escherichia fergusonii
           ATCC 35469]
 gi|218357682|emb|CAQ90323.1| site-specific tyrosine recombinase [Escherichia fergusonii ATCC
           35469]
          Length = 298

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 158/304 (51%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +E+ L++ TL +Y    R   + + +     +T+ T +     +++A +++R
Sbjct: 9   EQFLDALWLEKNLAENTLNAYR---RDLSMMVEWLHHRGLTLATAQS---DDLQALLAER 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL ++K   +    ++ + K    LP+ L+E Q   L+
Sbjct: 63  LEGGYKATSSARLLSAVRRLFQYLYRKKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG+K R
Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL       +  Y +   P+ LN ++I + LF   R + +    F   I+      G+
Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292

Query: 316 QTHP 319
           Q HP
Sbjct: 293 QHHP 296


>gi|83313028|ref|YP_423292.1| site-specific recombinase XerD [Magnetospirillum magneticum AMB-1]
 gi|82947869|dbj|BAE52733.1| Site-specific recombinase XerD [Magnetospirillum magneticum AMB-1]
          Length = 308

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/294 (29%), Positives = 142/294 (48%), Gaps = 17/294 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L+ +++ERG S  TL +Y  D   F  FL     +      +R      + A+I+++
Sbjct: 10  ESFLEMMQVERGASPNTLDAYGRDLADFAEFL-----DGRGFSPLRA-DARAVAAYIARQ 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +  R+  R LS +K F  ++   ++  +    N+   +    LP+ L  ++   L+
Sbjct: 64  AEIGMAARTQARRLSCLKQFYGFVFAERLRPDDPTANIDAPRLGRPLPKYLRREEVTALL 123

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D        +   +    +A+L  LY  GLR+SE +SL    +  D S L ++GKG K R
Sbjct: 124 DAARALEGSDGILM----TALLETLYAAGLRVSELVSLPLSAVARDPSVLVVRGKGSKER 179

Query: 199 IVPLLPSVRKAIL----EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +VPL    R A+L    E   L P         P   G  G     G F + + ++    
Sbjct: 180 MVPLSDPARAALLAWKVERQTLVPKSKPSRWLFP-SSGALGHLTRSG-FAKMLGRVAVLA 237

Query: 255 GL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           GL P   + H LRHSFA+HLL+ G DLRS+Q +LGH  ++TT+IYT++     G
Sbjct: 238 GLDPAKVSPHVLRHSFASHLLAGGADLRSVQEMLGHADIATTEIYTHLIDDEAG 291


>gi|110807498|ref|YP_691018.1| site-specific tyrosine recombinase XerC [Shigella flexneri 5 str.
           8401]
 gi|123342340|sp|Q0SZ02|XERC_SHIF8 RecName: Full=Tyrosine recombinase xerC
 gi|110617046|gb|ABF05713.1| tyrosine recombinase [Shigella flexneri 5 str. 8401]
          Length = 298

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 153/307 (49%), Gaps = 17/307 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+   RQ    + F +E    +Q+ +Q     +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--GLQSWQQCDAAMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRHKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHP 319
           +YD  HP
Sbjct: 286 VYDAAHP 292


>gi|332086819|gb|EGI91955.1| tyrosine recombinase XerD [Shigella boydii 5216-82]
          Length = 298

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 157/304 (51%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +E+ L++ TL +Y    R   + + +     +T+ T +     +++A +++R
Sbjct: 9   EQFLDALWLEKNLAENTLNAYR---RDLSMMVEWLHHRGVTLATAQS---DDLQALLAER 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K   +    ++ + K    LP+ L+E Q   L+
Sbjct: 63  LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG+K R
Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL       +  Y +   P+ LN ++I + LF   R + +    F   I+      G+
Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292

Query: 316 QTHP 319
           Q HP
Sbjct: 293 QHHP 296


>gi|329942671|ref|ZP_08291450.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila
           psittaci Cal10]
 gi|332287266|ref|YP_004422167.1| site-specific tyrosine recombinase [Chlamydophila psittaci 6BC]
 gi|313847852|emb|CBY16846.1| putative integrase/recombinase [Chlamydophila psittaci RD1]
 gi|325506606|gb|ADZ18244.1| site-specific tyrosine recombinase [Chlamydophila psittaci 6BC]
 gi|328814931|gb|EGF84920.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila
           psittaci Cal10]
 gi|328914512|gb|AEB55345.1| site-specific recombinase, phage integrase family [Chlamydophila
           psittaci 6BC]
          Length = 312

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 128/254 (50%), Gaps = 9/254 (3%)

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           L+   +R +I K   +    R++KR LS IKSF +Y  K +I  E     ++  +    L
Sbjct: 66  LTKDAVRLYILKLMQENKAKRTIKRRLSAIKSFSQYCVKHRILPEDPTETIQGPRLPKEL 125

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P  +  +Q       +L+ T   +K+   R+  +L L Y  GLRISE +++   +I    
Sbjct: 126 PSPITYEQV-----EILMATPDLSKYTGFRDRCLLELFYSSGLRISEIVAINHWDIDFTS 180

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             +RI+GKG K R+VP+ P   + + +Y               +F    GK L      R
Sbjct: 181 HLIRIRGKGKKERLVPMTPHAAQWLQQYLTHPARTGIEKDSQAIFLNRFGKRLTTRSIDR 240

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             ++  R  GL  + T HT+RH+ ATH L NG DL++IQ++LGH  L TT IYT+V+ K 
Sbjct: 241 KFQKYLRQSGLSGNITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMK- 299

Query: 306 GGDWMMEIYDQTHP 319
                 + +D++HP
Sbjct: 300 ---LKKQTHDESHP 310


>gi|150003451|ref|YP_001298195.1| integrase [Bacteroides vulgatus ATCC 8482]
 gi|254881251|ref|ZP_05253961.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|294777667|ref|ZP_06743118.1| tyrosine recombinase XerD [Bacteroides vulgatus PC510]
 gi|319640253|ref|ZP_07994978.1| integrase [Bacteroides sp. 3_1_40A]
 gi|149931875|gb|ABR38573.1| integrase [Bacteroides vulgatus ATCC 8482]
 gi|254834044|gb|EET14353.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|294448735|gb|EFG17284.1| tyrosine recombinase XerD [Bacteroides vulgatus PC510]
 gi|317388028|gb|EFV68882.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 313

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/287 (31%), Positives = 141/287 (49%), Gaps = 20/287 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + Q L++E+ LS  T+ +Y  D  + L   A+ T E I I  +R      +  F +    
Sbjct: 14  YKQYLKLEKSLSDNTVDAYLTDLDKLL---AYLTLENINILDVR---LENLEDFSAGLHD 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             I  RS  R LSGI+SF ++L             + + +    LP  +  ++   L+ +
Sbjct: 68  IGIHPRSQARILSGIRSFYRFLIMEDYLKADPTELLESPQTGFKLPEVMTVEEIDLLIGS 127

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +   T         RN AIL  LY CGLR+SE  +L    +  ++  ++++GKG K R+V
Sbjct: 128 IDRSTKE-----GQRNRAILETLYSCGLRVSELCNLKLSELYFEEGFIKVEGKGSKQRLV 182

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-----GKPLNPGVFQRYIRQLRRYLG 255
           P+ P   K I  Y+     D NL    P F         GK ++  +    I++L   +G
Sbjct: 183 PISPRAIKEIRLYFT----DRNLMKIKPGFEDFVFISNFGKNISRIMVFHIIKELAARIG 238

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           L    + HT RHSFATHLL  G +LR+IQ +LGH  + TT+IYT+++
Sbjct: 239 LKKKISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHID 285


>gi|194336037|ref|YP_002017831.1| tyrosine recombinase XerD [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308514|gb|ACF43214.1| tyrosine recombinase XerD [Pelodictyon phaeoclathratiforme BU-1]
          Length = 304

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 154/302 (50%), Gaps = 13/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  + IER  S  T +SY  D +++LIF+   +      + +  ++   I  F+ + 
Sbjct: 13  ESFLNYMLIERNFSANTRESYSNDLKRYLIFMQHRS------RRLEMITKEHIEEFMGEL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +   S+ R++S I+SF K+L   +    +   N+   KK+  LP  L   + + L+
Sbjct: 67  YDIGLEASSIARNISAIRSFHKFLVIERTLNTNPAENIHQPKKAQYLPSVLTVDETMRLL 126

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                  +   K++  R+ A+L LLY  G+R+SE +++  Q++  D   +RI GKG K R
Sbjct: 127 A-APQSVNPPGKYV-LRDKAMLELLYATGVRVSELINIRQQSLYLDAGFVRIFGKGSKER 184

Query: 199 IVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+  S    +  Y  +L    +  N    LF   RG  L+       +++     G+ 
Sbjct: 185 LVPVGTSAIGWVTRYQAELRIALVQRNSDDYLFLNARGIKLSRMALFTMVQKYAVMAGIE 244

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + + HT RH+FATHLL  G DLR++Q +LGH  + TTQIYT+++      ++ E++   
Sbjct: 245 KNISPHTFRHTFATHLLEGGADLRAVQEMLGHRSIVTTQIYTHIDRL----FIKEVHKTF 300

Query: 318 HP 319
           HP
Sbjct: 301 HP 302


>gi|183221814|ref|YP_001839810.1| tyrosine recombinase XerC [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189911886|ref|YP_001963441.1| tyrosine site-specific recombinase XerC [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167776562|gb|ABZ94863.1| Tyrosine site-specific recombinase XerC [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167780236|gb|ABZ98534.1| Tyrosine recombinase XerC [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 311

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 170/323 (52%), Gaps = 34/323 (10%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
            + P++++ +L +  + +L+   IE+  S+ TL +Y    R    F  F  +E+I I ++
Sbjct: 12  EHFPQVMA-DLFRSYRTYLK---IEKNYSEHTLFAY---LRDLKFFFEFCLKEEIDILSV 64

Query: 64  RQLSYTEIRAFISKRRTQKIGD-RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
             L   ++RA+ +  ++ K  D R+  R LS +++F K+L + +    + IL +   K  
Sbjct: 65  DVL---DVRAYFADLKSSKKQDKRTQSRKLSSLRTFYKFLFREEKIGANPILQVSFPKTK 121

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWI-DARNSAILYLLYGCGLRISEALSLTPQNI 181
             LP+     +     +++L +   E K +   R+ AI+ +LY  GLR+ E ++    ++
Sbjct: 122 KRLPKNFTPIET----EDILDYEDPEKKEVLGKRDKAIVEVLYSTGLRVFELVNAKLSDL 177

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKP 237
            ++ ++L++ GK  K R V + P  + A+ EY D      P ++ LN      RG  GK 
Sbjct: 178 NEELTSLKVMGKRRKERFVFIGPEAKVALQEYLDERGNGGPEEIFLNQ-----RG--GKL 230

Query: 238 LNPGVFQRYIRQLRR-YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
              G+  RYI   RR  +G+  + T H  RH+FAT LL+ G D+R++Q +LGH  LS+TQ
Sbjct: 231 TTRGI--RYILSERRSVMGMEKAITPHKFRHTFATDLLNAGADIRAVQELLGHSSLSSTQ 288

Query: 297 IYTNVNSKNGGDWMMEIYDQTHP 319
           +Y +V+     D + E+Y   HP
Sbjct: 289 VYLSVSR----DRLKEVYRNAHP 307


>gi|313501207|gb|ADR62573.1| XerC [Pseudomonas putida BIRD-1]
          Length = 299

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 151/316 (47%), Gaps = 47/316 (14%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +  +L  ER +S+ T Q Y  D  + + +      E+  I   + L   ++R  I++ 
Sbjct: 6   EAYCAHLRNERQVSEHTSQGYRRDLEKVIAYC-----EEHGIADWQALQIQQLRQLIARL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  RSL R LS ++   +YL +  +        +   K    LP+ L+  +AL L+
Sbjct: 61  HHHGQSPRSLARLLSAVRGLYRYLNREGLCQHDPATGLSAPKGERRLPKVLDTDRALQLL 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D  +     +  +I  R+ AIL L Y  GLR+SE  +L   ++      +++ GKG K R
Sbjct: 121 DGGV-----DDDFIARRDQAILELFYSSGLRLSELTNLDLDHLDLAAGLVQVLGKGGKAR 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF---------QRYIRQ 249
           ++P+    R+A+  +Y L              RGI G P +  VF          R +R 
Sbjct: 176 VLPVGRKAREALQAWYRL--------------RGI-GNPRDRAVFITRQGNRISPRAVR- 219

Query: 250 LR------RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           LR      R LG  L    H LRHSFA+H+L +  DLR++Q +LGH  +STTQIYT+++ 
Sbjct: 220 LRVKVAGERELGQHLHP--HMLRHSFASHVLESSQDLRAVQEMLGHADISTTQIYTHLDF 277

Query: 304 KNGGDWMMEIYDQTHP 319
           ++    +  +YD  HP
Sbjct: 278 QH----LAAVYDSAHP 289


>gi|332291018|ref|YP_004429627.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169104|gb|AEE18359.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 295

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 150/302 (49%), Gaps = 17/302 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L +E+  SK T+ +YE D  +FL F+    +E      +  + Y +IR++I    
Sbjct: 5   SFLDYLSLEKNYSKHTVIAYEKDVLEFLAFVKITFDE----SNLVDIHYAQIRSWIVSLV 60

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              + +R++ R +S +K++ K+L K      S +    +LK    L    +E +   + D
Sbjct: 61  DNDVSNRTVNRKISSLKAYYKFLLKIGEVEASPLAKHTSLKTPKRLQIPFSEVEVGAVFD 120

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            +         +   R+  I+ LLY  G+R +E + LT  +I   Q T++I GK +K RI
Sbjct: 121 RL----KEADDFATLRDLLIVELLYATGMRRAELVDLTVGSIDVVQKTIKIIGKRNKERI 176

Query: 200 VPLLPSVRKAILEY--YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           VP+L SV   ++ Y  Y      +  + +  L    +G  +   +  R I +        
Sbjct: 177 VPMLSSV---VVTYDRYIAVRSSVASSGEDALLVTNKGAKIYSTLVYRIINRYFSETSDK 233

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           L T+ H LRHSFATHLL+ G DL  ++ +LGH  L++TQ+YT+    N    + ++Y + 
Sbjct: 234 LKTSPHILRHSFATHLLNQGADLNIVKELLGHASLASTQVYTH----NSVQALKDVYSKA 289

Query: 318 HP 319
           HP
Sbjct: 290 HP 291


>gi|281424791|ref|ZP_06255704.1| tyrosine recombinase XerD [Prevotella oris F0302]
 gi|281401161|gb|EFB31992.1| tyrosine recombinase XerD [Prevotella oris F0302]
          Length = 307

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/287 (31%), Positives = 154/287 (53%), Gaps = 14/287 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L+ L++ER  S+ TL +Y  D    + +L  Y + +    T  QL   +++ F +  
Sbjct: 13  KSYLRYLKLERNYSQNTLDAYSHD----ITWLMDYCKREGLEVTALQLE--DLQHFAATL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +IG RS  R LSGI+SF ++L     I T+   L + +      LP  L+  +   L
Sbjct: 67  HEFQIGPRSQSRILSGIRSFYRFLLLDGYIETDPTEL-LESPALGQHLPEVLSTAEVDML 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
             ++ L     +K    RN AI+ +L+ CGLR+SE ++L    +  D   +R+ GKG K 
Sbjct: 126 EQSIDL-----SKLEGQRNLAIIEVLFSCGLRVSELVNLKLSQLYLDDGFIRVLGKGSKE 180

Query: 198 RIVPLLP-SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+ P ++++  L + D    ++    +  +F   RG  L   +    I++     G+
Sbjct: 181 RLVPISPRAIKELQLWFTDRVHLNIKPGEEDFVFLNRRGHHLTRTMILIMIKRQAEEAGI 240

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++
Sbjct: 241 KKTISPHTLRHSFATALLQGGADLRAIQAMLGHESIGTTEIYTHIDT 287


>gi|50842870|ref|YP_056097.1| site-specific tyrosine recombinase XerD [Propionibacterium acnes
           KPA171202]
 gi|289425573|ref|ZP_06427350.1| tyrosine recombinase XerD [Propionibacterium acnes SK187]
 gi|289428211|ref|ZP_06429907.1| tyrosine recombinase XerD [Propionibacterium acnes J165]
 gi|295130925|ref|YP_003581588.1| tyrosine recombinase XerD [Propionibacterium acnes SK137]
 gi|50840472|gb|AAT83139.1| site-specific recombinase [Propionibacterium acnes KPA171202]
 gi|289154551|gb|EFD03239.1| tyrosine recombinase XerD [Propionibacterium acnes SK187]
 gi|289158592|gb|EFD06799.1| tyrosine recombinase XerD [Propionibacterium acnes J165]
 gi|291376433|gb|ADE00288.1| tyrosine recombinase XerD [Propionibacterium acnes SK137]
 gi|313764051|gb|EFS35415.1| tyrosine recombinase XerD [Propionibacterium acnes HL013PA1]
 gi|313792446|gb|EFS40539.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA1]
 gi|313801509|gb|EFS42758.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA2]
 gi|313807151|gb|EFS45646.1| tyrosine recombinase XerD [Propionibacterium acnes HL087PA2]
 gi|313809643|gb|EFS47379.1| tyrosine recombinase XerD [Propionibacterium acnes HL083PA1]
 gi|313813282|gb|EFS50996.1| tyrosine recombinase XerD [Propionibacterium acnes HL025PA1]
 gi|313816401|gb|EFS54115.1| tyrosine recombinase XerD [Propionibacterium acnes HL059PA1]
 gi|313819347|gb|EFS57061.1| tyrosine recombinase XerD [Propionibacterium acnes HL046PA2]
 gi|313819996|gb|EFS57710.1| tyrosine recombinase XerD [Propionibacterium acnes HL036PA1]
 gi|313823212|gb|EFS60926.1| tyrosine recombinase XerD [Propionibacterium acnes HL036PA2]
 gi|313825000|gb|EFS62714.1| tyrosine recombinase XerD [Propionibacterium acnes HL063PA1]
 gi|313827302|gb|EFS65016.1| tyrosine recombinase XerD [Propionibacterium acnes HL063PA2]
 gi|313829963|gb|EFS67677.1| tyrosine recombinase XerD [Propionibacterium acnes HL007PA1]
 gi|313833033|gb|EFS70747.1| tyrosine recombinase XerD [Propionibacterium acnes HL056PA1]
 gi|313838270|gb|EFS75984.1| tyrosine recombinase XerD [Propionibacterium acnes HL086PA1]
 gi|314914912|gb|EFS78743.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA4]
 gi|314917863|gb|EFS81694.1| tyrosine recombinase XerD [Propionibacterium acnes HL050PA1]
 gi|314919752|gb|EFS83583.1| tyrosine recombinase XerD [Propionibacterium acnes HL050PA3]
 gi|314924835|gb|EFS88666.1| tyrosine recombinase XerD [Propionibacterium acnes HL036PA3]
 gi|314930006|gb|EFS93837.1| tyrosine recombinase XerD [Propionibacterium acnes HL067PA1]
 gi|314956418|gb|EFT00730.1| tyrosine recombinase XerD [Propionibacterium acnes HL027PA1]
 gi|314957287|gb|EFT01390.1| tyrosine recombinase XerD [Propionibacterium acnes HL002PA1]
 gi|314960608|gb|EFT04710.1| tyrosine recombinase XerD [Propionibacterium acnes HL002PA2]
 gi|314963140|gb|EFT07240.1| tyrosine recombinase XerD [Propionibacterium acnes HL082PA1]
 gi|314967736|gb|EFT11835.1| tyrosine recombinase XerD [Propionibacterium acnes HL037PA1]
 gi|314972871|gb|EFT16968.1| tyrosine recombinase XerD [Propionibacterium acnes HL053PA1]
 gi|314975706|gb|EFT19801.1| tyrosine recombinase XerD [Propionibacterium acnes HL045PA1]
 gi|314978092|gb|EFT22186.1| tyrosine recombinase XerD [Propionibacterium acnes HL072PA2]
 gi|314984110|gb|EFT28202.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA1]
 gi|314986253|gb|EFT30345.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA2]
 gi|314989533|gb|EFT33624.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA3]
 gi|315078203|gb|EFT50246.1| tyrosine recombinase XerD [Propionibacterium acnes HL053PA2]
 gi|315080906|gb|EFT52882.1| tyrosine recombinase XerD [Propionibacterium acnes HL078PA1]
 gi|315086002|gb|EFT57978.1| tyrosine recombinase XerD [Propionibacterium acnes HL002PA3]
 gi|315088279|gb|EFT60255.1| tyrosine recombinase XerD [Propionibacterium acnes HL072PA1]
 gi|315095700|gb|EFT67676.1| tyrosine recombinase XerD [Propionibacterium acnes HL038PA1]
 gi|315098208|gb|EFT70184.1| tyrosine recombinase XerD [Propionibacterium acnes HL059PA2]
 gi|315101638|gb|EFT73614.1| tyrosine recombinase XerD [Propionibacterium acnes HL046PA1]
 gi|315105953|gb|EFT77929.1| tyrosine recombinase XerD [Propionibacterium acnes HL030PA1]
 gi|315109457|gb|EFT81433.1| tyrosine recombinase XerD [Propionibacterium acnes HL030PA2]
 gi|327327897|gb|EGE69671.1| tyrosine recombinase XerD [Propionibacterium acnes HL096PA3]
 gi|327330004|gb|EGE71758.1| tyrosine recombinase XerD [Propionibacterium acnes HL097PA1]
 gi|327330036|gb|EGE71789.1| tyrosine recombinase XerD [Propionibacterium acnes HL096PA2]
 gi|327442733|gb|EGE89387.1| tyrosine recombinase XerD [Propionibacterium acnes HL043PA1]
 gi|327443869|gb|EGE90523.1| tyrosine recombinase XerD [Propionibacterium acnes HL043PA2]
 gi|327443937|gb|EGE90591.1| tyrosine recombinase XerD [Propionibacterium acnes HL013PA2]
 gi|327452342|gb|EGE98996.1| tyrosine recombinase XerD [Propionibacterium acnes HL087PA3]
 gi|327452783|gb|EGE99437.1| tyrosine recombinase XerD [Propionibacterium acnes HL083PA2]
 gi|327453535|gb|EGF00190.1| tyrosine recombinase XerD [Propionibacterium acnes HL092PA1]
 gi|328752650|gb|EGF66266.1| tyrosine recombinase XerD [Propionibacterium acnes HL025PA2]
 gi|328753798|gb|EGF67414.1| tyrosine recombinase XerD [Propionibacterium acnes HL087PA1]
 gi|328755026|gb|EGF68642.1| tyrosine recombinase XerD [Propionibacterium acnes HL020PA1]
 gi|328761444|gb|EGF74970.1| tyrosine recombinase XerD [Propionibacterium acnes HL099PA1]
          Length = 306

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/311 (30%), Positives = 158/311 (50%), Gaps = 27/311 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L++L +ERGLS  T+Q+Y  D  ++  +L         I ++ +++  ++  F  +R
Sbjct: 10  EDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLG-----SRGIGSLAEVTRVDVEEF--RR 62

Query: 79  RTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               IG    S+ R +  +++  ++              M    +S  LP+AL+  Q  +
Sbjct: 63  HLDHIGLAPASVTRCVVAVRNLHRFAVGSGQLQADVTAGMSPGTRSRRLPKALSMDQVES 122

Query: 137 LVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNI---MDDQS-TLRIQ 191
           L+       + +T  ++  R++A+L LLYG G R+SE  +L   +I   +DD    LR+ 
Sbjct: 123 LL------AAPDTSTVEGLRDAALLELLYGTGARVSEVCALDVDDIRPVLDDPDLGLRLI 176

Query: 192 GKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           GKGDK RIVPL     KA+  +       +    N +  L    RG+ L+       IR+
Sbjct: 177 GKGDKERIVPLGSYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRR 236

Query: 250 LRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                GL +   + H+LRHS+ATHLL  G D+R +Q +LGH  ++TTQIYT V +    D
Sbjct: 237 AGEAAGLDVEHLSPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVTA----D 292

Query: 309 WMMEIYDQTHP 319
            + E+Y  +HP
Sbjct: 293 HLREVYRSSHP 303


>gi|305664395|ref|YP_003860682.1| putative site-specific recombinase [Maribacter sp. HTCC2170]
 gi|88708412|gb|EAR00648.1| putative site-specific recombinase [Maribacter sp. HTCC2170]
          Length = 297

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 161/303 (53%), Gaps = 16/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q++   L +E+  SK T+ +YE D + F+ F     ++++ +++I  + Y  IR +I   
Sbjct: 4   QSFTSYLLLEKNYSKHTVNAYEKDIQSFIDF----CDKELKLESINNVEYNIIRNWIVTL 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               I +RS+ R ++ +K++ K+L++      + +   + LK S  +    +E++    +
Sbjct: 60  VNTGISNRSVNRKIASLKAYYKFLQRVGSININPLAKHKALKTSKKIEVPFSEEE----M 115

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             +LL    E  +  +R+  I+ LLY  G+R SE ++L   ++  +Q ++++ GK +K R
Sbjct: 116 QRILLQLPFEDDFEGSRDKLIIELLYTTGIRRSELINLRTNSVDLNQRSMKVLGKRNKER 175

Query: 199 IVPLL-PSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           IVPLL P++   + E Y     +L N+     +F  I G  +   +  R I+     +  
Sbjct: 176 IVPLLLPTI--DLFEAYFRYRKELENITHDEYIFLTISGNKIYETLVYRIIKGYFSKVSS 233

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            +  + H LRH+FATHLL+ G DL S++ +LGH  L++TQ+YT+    N    + +++  
Sbjct: 234 KVKRSPHILRHTFATHLLNKGADLNSVKELLGHSSLASTQVYTH----NSIAELKKVHSS 289

Query: 317 THP 319
            HP
Sbjct: 290 AHP 292


>gi|283835346|ref|ZP_06355087.1| tyrosine recombinase XerD [Citrobacter youngae ATCC 29220]
 gi|291068511|gb|EFE06620.1| tyrosine recombinase XerD [Citrobacter youngae ATCC 29220]
          Length = 298

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 155/304 (50%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER L++ TL +Y  D    + +L        T Q+       +++A +++R
Sbjct: 9   EQFLDALWLERNLAENTLSAYRRDLSMLVEWLHHRGVSLATAQS------DDLQALLAER 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS  + F ++L + K   +    ++ + K    LP+ L+E Q   L+
Sbjct: 63  MDGGYKATSSARLLSATRRFFQHLYREKYREDDPSASLASPKLPQRLPKDLSEAQVERLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L+        ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K R
Sbjct: 123 QAPLIEQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL       +  Y +   P+ LN ++I + LF   R + +    F   I+      G+
Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292

Query: 316 QTHP 319
           Q HP
Sbjct: 293 QHHP 296


>gi|170018860|ref|YP_001723814.1| site-specific tyrosine recombinase XerD [Escherichia coli ATCC
           8739]
 gi|169753788|gb|ACA76487.1| tyrosine recombinase XerD [Escherichia coli ATCC 8739]
          Length = 298

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 158/304 (51%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +E+ L++ TL +Y C  R   + + +     +T+ T +     +++A +++R
Sbjct: 9   EQFLDALWLEKNLAENTLNAY-C--RDLSMMVEWLHHRGLTLATAQS---DDLQALLAER 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K   +    ++ + K    LP+ L+E Q   L+
Sbjct: 63  LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG+K R
Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL       +  Y +   P+ LN ++I + LF   R + +    F   I+      G+
Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292

Query: 316 QTHP 319
           Q HP
Sbjct: 293 QHHP 296


>gi|83951798|ref|ZP_00960530.1| tyrosine recombinase XerD [Roseovarius nubinhibens ISM]
 gi|83836804|gb|EAP76101.1| tyrosine recombinase XerD [Roseovarius nubinhibens ISM]
          Length = 314

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 153/305 (50%), Gaps = 40/305 (13%)

Query: 19  QNW----LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK-ITIQTIRQLSYTEIRA 73
           Q W    L     E G +K TL +Y  D   F    + + E K +++ T++Q   +++ A
Sbjct: 4   QRWIALFLDAQAAEMGAAKNTLMAYARDLSDF----SQWVENKSLSLATLQQ---SDVEA 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++     Q +   +  R LS +K   ++    ++  ++  L ++   +S  LP+ L+E +
Sbjct: 57  YLVHCDAQGLAQSTRARRLSAVKQLYRFAFDERLRGDNPALRIKGPGRSGRLPKTLSEAE 116

Query: 134 ALTLVDNVLLHT-SHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
               VD +L    SH     D  RN+ ++ LLY  GLR++E +SL       +   L ++
Sbjct: 117 ----VDGLLQAARSHGRGPADRLRNTCLMELLYATGLRVTELVSLPVAATRGNPELLMVR 172

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF-------- 243
           GKG K R+VPL P  + A+ ++       L     +      +G P +P +F        
Sbjct: 173 GKGGKERMVPLSPPAQVALRDW-------LAHRDAMEETARQKGLPASPFLFPSRSKDGH 225

Query: 244 ---QRY---IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
               R+   I+ L    G+ P   T HTLRH+FATHLL+NG DLR+IQ++LGH  ++TT+
Sbjct: 226 LTRHRFYLLIKDLAVAAGVSPSKVTPHTLRHAFATHLLANGADLRAIQTLLGHADVATTE 285

Query: 297 IYTNV 301
           IYT+V
Sbjct: 286 IYTHV 290


>gi|24115108|ref|NP_709618.1| site-specific tyrosine recombinase XerC [Shigella flexneri 2a str.
           301]
 gi|30064893|ref|NP_839064.1| site-specific tyrosine recombinase XerC [Shigella flexneri 2a str.
           2457T]
 gi|82779010|ref|YP_405359.1| site-specific tyrosine recombinase XerC [Shigella dysenteriae
           Sd197]
 gi|194438678|ref|ZP_03070766.1| tyrosine recombinase XerC [Escherichia coli 101-1]
 gi|253775565|ref|YP_003038396.1| site-specific tyrosine recombinase XerC [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254163753|ref|YP_003046861.1| site-specific tyrosine recombinase XerC [Escherichia coli B str.
           REL606]
 gi|293417277|ref|ZP_06659902.1| tyrosine recombinase XerC [Escherichia coli B185]
 gi|297521542|ref|ZP_06939928.1| site-specific tyrosine recombinase XerC [Escherichia coli OP50]
 gi|300904066|ref|ZP_07121946.1| tyrosine recombinase XerC [Escherichia coli MS 84-1]
 gi|300921478|ref|ZP_07137826.1| tyrosine recombinase XerC [Escherichia coli MS 115-1]
 gi|300930023|ref|ZP_07145455.1| tyrosine recombinase XerC [Escherichia coli MS 187-1]
 gi|301303707|ref|ZP_07209828.1| tyrosine recombinase XerC [Escherichia coli MS 124-1]
 gi|309784527|ref|ZP_07679165.1| tyrosine recombinase XerC [Shigella dysenteriae 1617]
 gi|312971902|ref|ZP_07786076.1| tyrosine recombinase XerC [Escherichia coli 1827-70]
 gi|331655496|ref|ZP_08356489.1| tyrosine recombinase XerC [Escherichia coli M718]
 gi|34222798|sp|Q7ZAL9|XERC_SHIFL RecName: Full=Tyrosine recombinase xerC
 gi|123769525|sp|Q329Y7|XERC_SHIDS RecName: Full=Tyrosine recombinase xerC
 gi|24054376|gb|AAN45325.1| site-specific recombinase [Shigella flexneri 2a str. 301]
 gi|30043153|gb|AAP18875.1| site-specific recombinase [Shigella flexneri 2a str. 2457T]
 gi|81243158|gb|ABB63868.1| site-specific recombinase [Shigella dysenteriae Sd197]
 gi|194422482|gb|EDX38481.1| tyrosine recombinase XerC [Escherichia coli 101-1]
 gi|242379341|emb|CAQ34153.1| site-specific recombinase, acts on cer sequence of ColE1, effects
           chromosome segregation at cell division, subunit of Xer
           site-specific recombination system [Escherichia coli
           BL21(DE3)]
 gi|253326609|gb|ACT31211.1| tyrosine recombinase XerC [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253975654|gb|ACT41325.1| site-specific tyrosine recombinase XerC [Escherichia coli B str.
           REL606]
 gi|253979810|gb|ACT45480.1| site-specific tyrosine recombinase XerC [Escherichia coli
           BL21(DE3)]
 gi|281603204|gb|ADA76188.1| Tyrosine recombinase xerC [Shigella flexneri 2002017]
 gi|291431045|gb|EFF04040.1| tyrosine recombinase XerC [Escherichia coli B185]
 gi|300403946|gb|EFJ87484.1| tyrosine recombinase XerC [Escherichia coli MS 84-1]
 gi|300411595|gb|EFJ94905.1| tyrosine recombinase XerC [Escherichia coli MS 115-1]
 gi|300462056|gb|EFK25549.1| tyrosine recombinase XerC [Escherichia coli MS 187-1]
 gi|300841007|gb|EFK68767.1| tyrosine recombinase XerC [Escherichia coli MS 124-1]
 gi|308927633|gb|EFP73102.1| tyrosine recombinase XerC [Shigella dysenteriae 1617]
 gi|310334279|gb|EFQ00484.1| tyrosine recombinase XerC [Escherichia coli 1827-70]
 gi|313647147|gb|EFS11602.1| tyrosine recombinase XerC [Shigella flexneri 2a str. 2457T]
 gi|315254176|gb|EFU34144.1| tyrosine recombinase XerC [Escherichia coli MS 85-1]
 gi|323959066|gb|EGB54735.1| tyrosine recombinase XerC [Escherichia coli H489]
 gi|323969348|gb|EGB64647.1| tyrosine recombinase XerC [Escherichia coli TA007]
 gi|331046817|gb|EGI18901.1| tyrosine recombinase XerC [Escherichia coli M718]
 gi|332750959|gb|EGJ81364.1| tyrosine recombinase XerC [Shigella flexneri 4343-70]
 gi|332751049|gb|EGJ81453.1| tyrosine recombinase XerC [Shigella flexneri K-671]
 gi|332751906|gb|EGJ82301.1| tyrosine recombinase XerC [Shigella flexneri 2747-71]
 gi|332764345|gb|EGJ94580.1| tyrosine recombinase XerC [Shigella flexneri 2930-71]
 gi|332996985|gb|EGK16603.1| tyrosine recombinase XerC [Shigella flexneri VA-6]
 gi|332997912|gb|EGK17519.1| tyrosine recombinase XerC [Shigella flexneri K-218]
 gi|332998245|gb|EGK17847.1| tyrosine recombinase XerC [Shigella flexneri K-272]
 gi|333013785|gb|EGK33148.1| tyrosine recombinase XerC [Shigella flexneri K-227]
 gi|333019500|gb|EGK38781.1| tyrosine recombinase XerC [Shigella flexneri K-304]
          Length = 298

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 153/307 (49%), Gaps = 17/307 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+   RQ    + F +E    +Q+ +Q     +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--GLQSWQQCDAAMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHP 319
           +YD  HP
Sbjct: 286 VYDAAHP 292


>gi|257458301|ref|ZP_05623450.1| tyrosine recombinase XerD [Treponema vincentii ATCC 35580]
 gi|257444328|gb|EEV19422.1| tyrosine recombinase XerD [Treponema vincentii ATCC 35580]
          Length = 297

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 141/262 (53%), Gaps = 16/262 (6%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           I   S  +   F+  R  + I  R+L +  + ++SF ++L+   +  ++    + + ++ 
Sbjct: 44  IEDASADDCIGFLLARAEEGITGRTLAKDQAALRSFYRFLQLENVRADNPAEQLESPRRE 103

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            +LPRAL   +   L+  + L T +       R+ A+  L+Y  GLR+SEA++L+ ++I 
Sbjct: 104 KNLPRALELDEVDKLLAAIPLDTPN-----GIRDRALFELIYSAGLRVSEAVTLSLEDIF 158

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDL------NLNIQLPLFRGIRG 235
            ++  L+++GKG K RIVP      + +  Y     P  L      N      +F    G
Sbjct: 159 FNEQLLKVRGKGGKERIVPFGAQAEERLTVYLKTARPLLLKPAHSENTETTGAVFLNHHG 218

Query: 236 KPLN-PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           + L   G+++R ++++ +  G+  +T  HTLRHS+ATHLL+ G DLRS+Q +LGH  ++T
Sbjct: 219 ERLTRKGIWKR-LQEIEQLSGV--TTKIHTLRHSYATHLLAGGADLRSVQCLLGHASIAT 275

Query: 295 TQIYTNVNSKNGGDWMMEIYDQ 316
           TQIYT++  K+   +  + + Q
Sbjct: 276 TQIYTHIEDKDLEAYHRKFFKQ 297


>gi|332526676|ref|ZP_08402778.1| tyrosine recombinase XerD subunit [Rubrivivax benzoatilyticus JA2]
 gi|332111079|gb|EGJ11111.1| tyrosine recombinase XerD subunit [Rubrivivax benzoatilyticus JA2]
          Length = 310

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 154/300 (51%), Gaps = 16/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  L IE GL+ LTL +Y  D   +  +LA    +++     R+    ++ A+I++R T
Sbjct: 24  FVDALWIEDGLAPLTLAAYRRDLTLYAGWLARRHAKRL--DDSRE---ADLLAYIAERHT 78

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                 +  R L+  K + ++  +  +      L +++ ++   +P++L+E+Q    V+ 
Sbjct: 79  ATRAT-TANRRLTVFKRYFRWALREHLVAADPTLRLQSARQPLRVPKSLSERQ----VEA 133

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +L     +T  +  R+ A+L L+YG GLR+SE + L   ++   +  LR+ GKG K RIV
Sbjct: 134 LLAAPETDTA-LGLRDRAMLELMYGSGLRVSELVGLKSVHLGLAEGVLRVVGKGSKERIV 192

Query: 201 PLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P        +  Y  +     L       LF   RG  +    F   +++  R  G+ + 
Sbjct: 193 PFGEEAHGWLQRYLGEARAAILGGQASDALFVTARGGAMTRQAFWLLVKKYARAAGILVP 252

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR++Q +LGH  + TT IYT+V  +     + +++ + HP
Sbjct: 253 LSPHTLRHAFATHLLNHGADLRAVQMLLGHADIGTTTIYTHVARER----LRQLHARHHP 308


>gi|262280674|ref|ZP_06058457.1| tyrosine recombinase XerD [Acinetobacter calcoaceticus RUH2202]
 gi|262257574|gb|EEY76309.1| tyrosine recombinase XerD [Acinetobacter calcoaceticus RUH2202]
          Length = 306

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 131/234 (55%), Gaps = 9/234 (3%)

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           RS+ R LS ++ F K+L+++K+ +++ +    + K   +LP+ L+E+   +L+    ++T
Sbjct: 80  RSIARCLSTLRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVESLIQAPDINT 139

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           +     +  R+ A+  +LY CGLR+SE L+L  + I   Q  LR+ GKG+K R+VPL   
Sbjct: 140 A-----LGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRVTGKGNKERLVPLGQF 194

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
             + +  Y +     L  +    LF    G  ++   F   I++      +    + HTL
Sbjct: 195 ACEWVERYLNNARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAELSPHTL 254

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           RH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        M +++++ HP
Sbjct: 255 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR----MQQLHEKHHP 304


>gi|225076001|ref|ZP_03719200.1| hypothetical protein NEIFLAOT_01028 [Neisseria flavescens
           NRL30031/H210]
 gi|224952716|gb|EEG33925.1| hypothetical protein NEIFLAOT_01028 [Neisseria flavescens
           NRL30031/H210]
          Length = 316

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 150/301 (49%), Gaps = 25/301 (8%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS--KRRTQK-I 83
           +++G S+ T+ +Y  D  + +  L    E  +  +          R F++  K+ +QK +
Sbjct: 37  LQQGKSEHTVSAYWRDLSELMRLLPDNLENGLPTR----------RDFVAVLKKLSQKGL 86

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
            + SL R LS  + +  +L + ++       NM+  +    LP+AL ++     ++++L 
Sbjct: 87  SESSLARKLSVWRQYCSWLVQIEVMESDPTFNMKAPRLPERLPKALPQEP----LNHILD 142

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
           H   + + +D R+ A+  L+YG GLR+SE   L    I+ D+  + ++GKG K R VPL 
Sbjct: 143 HAPVDDE-LDVRDKAMFELMYGSGLRLSEIQGLNLDGIVLDEGWVSVKGKGGKQRQVPL- 200

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
             V K+I    D     +    +  LF    G  L     Q+ ++     +G     + H
Sbjct: 201 --VAKSIAALRDYLAVRIAKEGEQALFTNKNGGRLGQRQIQKRLQAWAVRVGSASHISPH 258

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            +RHS+ATHLL   GD+R++Q +LGH  LS TQ+YT ++     D +  +YD+ HP   +
Sbjct: 259 MMRHSYATHLLQASGDIRAVQELLGHSNLSATQVYTKLDF----DHLARVYDEAHPRAKR 314

Query: 324 K 324
           K
Sbjct: 315 K 315


>gi|119716715|ref|YP_923680.1| tyrosine recombinase XerD [Nocardioides sp. JS614]
 gi|119537376|gb|ABL81993.1| tyrosine recombinase XerD subunit [Nocardioides sp. JS614]
          Length = 318

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 158/328 (48%), Gaps = 36/328 (10%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            S ++ +  + +L +L +ERGL+  TL SY  D R++  +LA     +  ++ +  ++  
Sbjct: 5   ASNDVARAVRTYLDHLTVERGLATNTLTSYRRDLRRYQEYLA-----ECGVEHLADVTEG 59

Query: 70  EIRAFISKRRTQKIGDR--------SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            + AF+ + R    GDR        S  R++  ++ F ++     +        ++    
Sbjct: 60  TVAAFLVRLRE---GDRDHPALSATSAARTVVAVRGFHRFAVADGLAATDPASAVKPPTP 116

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           +  LP+AL     L  V+ +L         +  R+ A+L +LYG G RISEA+ L   ++
Sbjct: 117 AKRLPKALP----LADVEAILEAAGAPGTTLALRDRALLEVLYGTGARISEAVGLDVDDL 172

Query: 182 MDDQS----TLRIQGKGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRG 232
              +S    T+ ++GKG K R+VP+    R+A+  Y      +L      +     LF  
Sbjct: 173 DWGESGVEGTVLLRGKGGKERLVPVGSYAREAVDAYLVRGRPELVAASARVTGG-ALFLN 231

Query: 233 IRGKPLN-PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
            RG  L+    +   +R   R  G+    + HTLRHSFATHLL  G D+R +Q +LGH  
Sbjct: 232 ARGGRLSRQSAWAVLVRAAERA-GVTRDVSPHTLRHSFATHLLDGGADVRVVQELLGHAS 290

Query: 292 LSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           ++TTQ+YT V   N    + E++   HP
Sbjct: 291 VTTTQVYTLVTVDN----LREVFATAHP 314


>gi|120553434|ref|YP_957785.1| tyrosine recombinase XerC [Marinobacter aquaeolei VT8]
 gi|120323283|gb|ABM17598.1| tyrosine recombinase XerC [Marinobacter aquaeolei VT8]
          Length = 324

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 154/302 (50%), Gaps = 20/302 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            ++++L+ E+  S  T + Y+ D ++ + +LA        +    +LS  ++R ++++  
Sbjct: 20  GFIRHLQSEKRHSPRTCEHYQRDLQRLVAWLA-----DNGLNDWSELSAHDVRRYVARLS 74

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +  RS+ R LS I+ F +YL +  +  ++  L++R  K    LPR  +  Q   L+D
Sbjct: 75  RDGLSGRSIARHLSSIRRFYQYLLREGLAIDNPALDIRAPKSGRRLPRVADVDQIGQLLD 134

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                       ++ R+ A+  L+Y  GLR++E        +      +R+ GKG+K R+
Sbjct: 135 AT------PEDPLEIRDLAMFELMYSSGLRLAELAGADLSALDLKGPEIRVLGKGNKERV 188

Query: 200 VPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +P+    RKA+  L+ +  C   L    +  LF   RG  L+    Q  + +     G  
Sbjct: 189 LPV---GRKAVAALQQWLSCRRALVTEGEKALFVSQRGTRLSRRSIQSRLSRWGILHGAD 245

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRHSFA+H+L + GDLR++Q +LGH  ++TTQ+YT+++ ++    +  +YDQ+
Sbjct: 246 QRLHPHLLRHSFASHMLESSGDLRAVQELLGHADIATTQVYTHLDFQH----LARVYDQS 301

Query: 318 HP 319
           HP
Sbjct: 302 HP 303


>gi|323964056|gb|EGB59546.1| tyrosine recombinase XerC [Escherichia coli M863]
 gi|327250661|gb|EGE62367.1| tyrosine recombinase XerC [Escherichia coli STEC_7v]
          Length = 298

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 153/307 (49%), Gaps = 17/307 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+   RQ    + F +E    +Q+ +Q     +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--GLQSWQQCDAAMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DINRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHP 319
           +YD  HP
Sbjct: 286 VYDAAHP 292


>gi|323173892|gb|EFZ59521.1| tyrosine recombinase XerD [Escherichia coli LT-68]
          Length = 298

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 153/303 (50%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +E+ L++ TL +Y    R   + + +     +T+ T +     +++A +++R
Sbjct: 9   EQFLDALWLEKNLAENTLNAYR---RDLSMMVEWLHHRGLTLATAQS---DDLQALLAER 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K   +    ++ + K    LP+ L+E Q   L+
Sbjct: 63  LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG+K R
Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       +  Y +   P+ LN      LF   R + +    F   I+      G+ 
Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNCVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGID 237

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q
Sbjct: 238 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQ 293

Query: 317 THP 319
            HP
Sbjct: 294 HHP 296


>gi|312795208|ref|YP_004028130.1| integrase/recombinase (XerD/RipX family) [Burkholderia rhizoxinica
           HKI 454]
 gi|312166983|emb|CBW73986.1| Integrase/recombinase (XerD/RipX family) [Burkholderia rhizoxinica
           HKI 454]
          Length = 308

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/280 (32%), Positives = 142/280 (50%), Gaps = 17/280 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E GLS+ TL +Y  D   +  +LA  T E+ T+   R+   +++  +++ R   K  
Sbjct: 27  LWLEHGLSRNTLDAYRRDLSLYCDWLA-ATHER-TLDATRE---SDLNGYLAVRSDGKAS 81

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R LS  + +  +  +         L +R+ ++    P +LNE Q   L+    L 
Sbjct: 82  --SANRRLSVFRRYFAWALREHRVAADPTLRIRSARQPPRFPSSLNEAQVEALLGAPDLD 139

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           T      +  R+ A+L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+VP   
Sbjct: 140 TP-----LGLRDRAMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGAKERLVPFGD 194

Query: 205 SVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ--LRRYLGLPLSTT 261
             R  +  Y  D     L       LF   RG  +    F   I++  LR  + +PLS  
Sbjct: 195 EARGWLERYLRDARAVLLGARGADALFVTARGGAMTRQQFWNIIKRYALRADIHVPLSP- 253

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 254 -HTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHV 292


>gi|260223080|emb|CBA33286.1| Tyrosine recombinase xerD [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 297

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/312 (30%), Positives = 148/312 (47%), Gaps = 39/312 (12%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLA---FYTEEKITIQTIRQLSYTEIRAFISK 77
           ++  L +E GLSK TLQ+Y  D   F   LA    Y  ++  +Q      + E +A  + 
Sbjct: 10  FIDALWLEEGLSKNTLQAYRRDLTLFAGHLAPKPLYGAQEHDLQGYFAARHAETKATTAN 69

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           RR            L+ +K F ++  +     +   L ++  K++  +P+ L E Q    
Sbjct: 70  RR------------LTVLKRFFRWALREGHIAQDPTLKLQAAKQALRVPKTLTEAQV--- 114

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               LL+     + +  R+ A+L LLY  GLR+SE ++L    +  ++  LR+ GKG K 
Sbjct: 115 --EALLNAPDTNEALGIRDKAMLELLYASGLRVSELVTLRMVQLGLNEGVLRVTGKGSKE 172

Query: 198 RIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNP--------GVFQRYI 247
           R+VP    V    L  Y   P    L       +F  +RG             G+ +RY 
Sbjct: 173 RLVPF-GEVAGLWLSRYLAGPRAELLAAKQSADVFVTVRGSKSGTAMSRIMFWGLVKRYA 231

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            Q     G+ +  + HTLRH+FATHLL++G DLRS+Q +LGH  +STT IYT++      
Sbjct: 232 LQA----GIRVPLSPHTLRHAFATHLLNHGADLRSVQMLLGHADISTTTIYTHIAR---- 283

Query: 308 DWMMEIYDQTHP 319
           D +  ++ Q HP
Sbjct: 284 DRLASLHAQHHP 295


>gi|99081269|ref|YP_613423.1| phage integrase [Ruegeria sp. TM1040]
 gi|99037549|gb|ABF64161.1| phage integrase [Ruegeria sp. TM1040]
          Length = 317

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 155/325 (47%), Gaps = 40/325 (12%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L     E G ++ TL +Y  D R    ++      +   Q+  Q+   +I A++    
Sbjct: 13  TFLDAQAAELGAARNTLLAYGRDLRNVTTWM------RTKGQSFAQMQQADIEAYLISCD 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +   +  R LS IK   ++  +     ++  L ++   +  SLP+ L+E +    VD
Sbjct: 67  AEGLSRATRARRLSAIKQIYRFAFEEGWRQDNPALQIKGPGRDKSLPKTLDEAE----VD 122

Query: 140 NVLLHTSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
             LL  + E    +A   RN+ ++ LLY  G+R+SE +SL       D + L I GKG K
Sbjct: 123 R-LLAAAREVGRTEADRLRNTCLMELLYATGMRVSELVSLPVSATRGDPNMLLILGKGGK 181

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF-----------QR 245
            R+VPL P  R A+  +       + L   L   R  +G   +  +F            R
Sbjct: 182 ERMVPLSPPARAALGAW-------IVLRDSLEDKREGQGHKASRFLFPSRSKEGHLTRHR 234

Query: 246 Y---IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +   I++L    G+ P   T HTLRH+FATHLL NG DLR+IQ++LGH  ++TT+IYT+V
Sbjct: 235 FYLLIKELAVAGGVSPEKVTPHTLRHAFATHLLQNGADLRAIQALLGHADIATTEIYTHV 294

Query: 302 NSKNGGDWMMEIYDQTHPSITQKDK 326
                   + E+  Q HP   + D+
Sbjct: 295 LDAR----LAELVHQHHPLAAKDDE 315


>gi|306812204|ref|ZP_07446402.1| site-specific tyrosine recombinase XerD [Escherichia coli NC101]
 gi|305854242|gb|EFM54680.1| site-specific tyrosine recombinase XerD [Escherichia coli NC101]
          Length = 298

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 157/304 (51%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +E+ L++ TL +Y    R   + + +     +T+ T +     +++A +++R
Sbjct: 9   EQFLDALWLEKNLAENTLNAYR---RDLSMMVEWLHHRGLTLATAQS---DDLQALLAER 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K   +    ++ + K    LP+ L+E Q   L+
Sbjct: 63  LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG+K R
Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLPQGVVRVIGKGNKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL       +  Y +   P+ LN ++I + LF   R + +    F   I+      G+
Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292

Query: 316 QTHP 319
           Q HP
Sbjct: 293 QHHP 296


>gi|332160506|ref|YP_004297083.1| site-specific tyrosine recombinase XerD [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318607025|emb|CBY28523.1| tyrosine recombinase XerD [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664736|gb|ADZ41380.1| site-specific tyrosine recombinase XerD [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330863449|emb|CBX73568.1| tyrosine recombinase xerD [Yersinia enterocolitica W22703]
          Length = 299

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 153/303 (50%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER L++ TL SY  D      +L  +  + +   +       ++++F+++R
Sbjct: 10  EQFLDALWLERNLAENTLASYRLDLHALSGWLEHHDSDLLRAGS------QDLQSFLAER 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q     
Sbjct: 64  IEGGYKSTSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQV---- 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            + LL++ +    ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K R
Sbjct: 120 -DALLNSPNVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKER 178

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       I  Y +   P+ +N      LF   R + +    F   I+      G+ 
Sbjct: 179 LVPLGEEAVYWIENYMEYGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGID 238

Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  ++ Q
Sbjct: 239 SERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKLLHQQ 294

Query: 317 THP 319
            HP
Sbjct: 295 HHP 297


>gi|170719429|ref|YP_001747117.1| site-specific tyrosine recombinase XerC [Pseudomonas putida W619]
 gi|254799352|sp|B1J1V8|XERC_PSEPW RecName: Full=Tyrosine recombinase xerC
 gi|169757432|gb|ACA70748.1| tyrosine recombinase XerC [Pseudomonas putida W619]
          Length = 299

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 154/313 (49%), Gaps = 35/313 (11%)

Query: 17  ERQ--NWLQNLEIERGLSKLTLQSYECDTRQFLIFL---AFYTEEKITIQTIRQLSYTEI 71
           ERQ   +  +L  ER +S+ TL +Y  D  + + +           + IQ +RQL     
Sbjct: 2   ERQLEAYCAHLRNERQVSEHTLLAYRRDLEKVIEYCNTQGIAGWGALQIQQLRQL----- 56

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
              I+++  Q    RSL R LS ++   +YL +  +        +   K    LP+ L+ 
Sbjct: 57  ---IARQHHQGQSSRSLARLLSAVRGLYRYLNREGLCQHDPASGLSAPKGERRLPKVLDT 113

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            +AL L+D  +     +  +I  R+ AIL L Y  GLR+SE  +L  +++      +++ 
Sbjct: 114 DRALQLLDGGV-----DDDFIARRDQAILELFYSSGLRLSELTNLDLEHLDLAAGLVQVL 168

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           GKG K R++P+    R+A+ ++  L     P D        +F   +G  L P   Q  +
Sbjct: 169 GKGGKARVLPVGRKAREAMQQWLRLRGIGGPRDG------AVFISRQGNRLGPRAIQMRV 222

Query: 248 RQL-RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +    R LG  L    H LRHSFA+H+L +  DLR++Q +LGH  +STTQIYT+++ ++ 
Sbjct: 223 KAAGERELGQHLHP--HMLRHSFASHVLESSQDLRAVQEMLGHADISTTQIYTHLDFQH- 279

Query: 307 GDWMMEIYDQTHP 319
              +  +YD  HP
Sbjct: 280 ---LAAVYDSAHP 289


>gi|29840081|ref|NP_829187.1| site-specific tyrosine recombinase XerC [Chlamydophila caviae GPIC]
 gi|75539745|sp|Q823T9|XERC_CHLCV RecName: Full=Tyrosine recombinase xerC
 gi|29834429|gb|AAP05065.1| site-specific recombinase, phage integrase family [Chlamydophila
           caviae GPIC]
          Length = 312

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/259 (32%), Positives = 133/259 (51%), Gaps = 29/259 (11%)

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +R ++ +   +    R++KR LS IKSF +Y  K +I  E     +   +    LP  + 
Sbjct: 71  VRLYVLELMQENKAKRTIKRRLSAIKSFSQYCIKNRIIFEDPTETIHGPRLPKELPSPIT 130

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            +Q       +L+ T   +K+   R+  +L L Y  GLRISE +++   +I  + + +RI
Sbjct: 131 YEQV-----EILMATPDLSKYTGFRDRCLLELFYSSGLRISEIVAINHWDIDFNSNLIRI 185

Query: 191 QGKGDKIRIVPLLPSVRKAILEYY----------DLCPFDLNLNIQLPLFRGIRGKPLNP 240
           +GKG K R+VP+ P   + + +Y           D   F LN   +    R I  K    
Sbjct: 186 RGKGKKERLVPMTPHAAQWLQQYLHHPERAHVEQDPQAFFLNRFGKRLTTRSIDRK---- 241

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             FQ+Y+RQ     GL  S T HT+RH+ ATH L NG DL++IQ++LGH  L TT IYT+
Sbjct: 242 --FQKYLRQS----GLSGSITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTH 295

Query: 301 VNSKNGGDWMMEIYDQTHP 319
           V+ K       + ++++HP
Sbjct: 296 VSMK----LKKQTHEESHP 310


>gi|77461722|ref|YP_351229.1| site-specific tyrosine recombinase XerC [Pseudomonas fluorescens
           Pf0-1]
 gi|123602828|sp|Q3K4R6|XERC_PSEPF RecName: Full=Tyrosine recombinase xerC
 gi|77385725|gb|ABA77238.1| tyrosine recombinase [Pseudomonas fluorescens Pf0-1]
          Length = 299

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 149/306 (48%), Gaps = 21/306 (6%)

Query: 17  ERQ--NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ERQ   + ++L  ER +S  TL +Y  D  + L +       K  I + + L    +R+ 
Sbjct: 2   ERQLDAYCEHLRSERQVSPHTLSAYRRDLDKVLGWCI-----KQNIGSWQALDIQRLRSL 56

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I++   Q    RSL R LS ++    YL +  +        +   K    LP+ L+  +A
Sbjct: 57  IARLHAQGQSSRSLARLLSAVRGLYHYLNRECLCDHDPATGLAPPKGERRLPKTLDTDRA 116

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           L L++  +     E  ++  R+ AIL L Y  GLR+SE   L    +      +++ GKG
Sbjct: 117 LQLLEGAV-----EDDFLARRDQAILELFYSSGLRLSELTGLNLDQLDLADGMVQVLGKG 171

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR-QLRRY 253
            K R++P+    R+A+ ++  L    L       +F   +G+ L P   Q  ++    R 
Sbjct: 172 SKTRLLPVGKKAREALEQWLPLRA--LTNPSDDAVFVSQQGRRLGPRAIQVRVKLAGERE 229

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           LG  L    H LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +
Sbjct: 230 LGQNLHP--HMLRHSFASHLLESSQDLRAVQELLGHSDIKTTQIYTHLDFQH----LAAV 283

Query: 314 YDQTHP 319
           YD  HP
Sbjct: 284 YDSAHP 289


>gi|260588143|ref|ZP_05854056.1| integrase/recombinase XerD [Blautia hansenii DSM 20583]
 gi|260541670|gb|EEX22239.1| integrase/recombinase XerD [Blautia hansenii DSM 20583]
          Length = 294

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 149/306 (48%), Gaps = 20/306 (6%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E Q ++++L   RG S+ T  SYE D ++   FL     ++  I    Q+S   + ++I 
Sbjct: 4   EIQEFIEHLHNTRGTSRNTEVSYERDLKKLEQFL-----KQEGILEWHQVSAVLLNSYIM 58

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               +     S+ RS++ I++F +YL +R+   E+    ++  K     P  L       
Sbjct: 59  YLERKNFAASSISRSVASIRAFFQYLCQRECWRENPAEGLKAPKIEKKAPGILT------ 112

Query: 137 LVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
            VD V  LL    E      R+ A+L LLY  G+R+SE + LT +++      L    + 
Sbjct: 113 -VDEVDLLLSQPKENTAKGVRDRAMLELLYATGIRVSELIHLTLRDVNLKLGYLTC-SQS 170

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           ++ R++P   + + A+  Y      +L   N    LF    GK ++   F + ++     
Sbjct: 171 ERERVIPFGATAKTAVEAYMAWARVELLGENSSEWLFVNCSGKSMSRQGFWKILKGYAVS 230

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    T HTLRHSFA HL+ NG DL+S+Q ++GH  +STTQIY N+N       + ++
Sbjct: 231 AGIQQDITPHTLRHSFAAHLVQNGADLKSVQEMMGHSDISTTQIYMNMNVNK----IRDV 286

Query: 314 YDQTHP 319
           Y + HP
Sbjct: 287 YMKAHP 292


>gi|238792839|ref|ZP_04636470.1| Tyrosine recombinase xerD [Yersinia intermedia ATCC 29909]
 gi|238727947|gb|EEQ19470.1| Tyrosine recombinase xerD [Yersinia intermedia ATCC 29909]
          Length = 299

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 155/303 (51%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER L++ TL SY  D      +L  +  + +   +       ++++F+++R
Sbjct: 10  EQFLDALWLERNLAENTLASYRLDLHALTGWLEHHGSDLLRAGS------QDLQSFLAER 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q    V
Sbjct: 64  IEGGYKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQ----V 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D  LL++ +    ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K R
Sbjct: 120 DR-LLNSPNVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKER 178

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       I  Y +   P+ +N      LF   R + +    F   I+      G+ 
Sbjct: 179 LVPLGEEAVYWIENYMEHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGID 238

Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q
Sbjct: 239 SERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQQ 294

Query: 317 THP 319
            HP
Sbjct: 295 HHP 297


>gi|299771869|ref|YP_003733895.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1]
 gi|298701957|gb|ADI92522.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1]
          Length = 306

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 129/234 (55%), Gaps = 9/234 (3%)

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           RS+ R LS ++ F K+L+++K+ +++ +    + K   +LP+ L+E+    L+    ++T
Sbjct: 80  RSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQAPDINT 139

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           +     +  R+ A+  +LY CGLR+SE L+L  + I   Q  LR+ GKG+K R+VPL   
Sbjct: 140 A-----LGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRVTGKGNKERLVPLGQF 194

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
             + +  Y       L  +    LF    G  ++   F   I++      +    + HTL
Sbjct: 195 ACEWVERYLHNARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAELSPHTL 254

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           RH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        M +++++ HP
Sbjct: 255 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR----MQQLHEKHHP 304


>gi|251796343|ref|YP_003011074.1| tyrosine recombinase XerD [Paenibacillus sp. JDR-2]
 gi|247543969|gb|ACT00988.1| tyrosine recombinase XerD [Paenibacillus sp. JDR-2]
          Length = 296

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 143/303 (47%), Gaps = 16/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++Q L  ER LS  TL+SY  D +  L +L   +   +       LS+  +R   S R
Sbjct: 6   ESFIQYLMNERALSSSTLESYGRDLQGLLDYLEQQSIANVADVHRHHLSHYLLRLKESGR 65

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +T  +      R ++ I++F  YL        +  + + + K+    P  L+ + A    
Sbjct: 66  KTSTVS-----RHIASIRAFFHYLAVNGYIQLNPAIYIESPKQEKKEPSVLSMENA---- 116

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             +LL T         R+ A+L LLY  G+R+SE +SL   ++    + +R  G G K R
Sbjct: 117 -GLLLETPQPVTAAGKRDKAMLELLYATGIRVSELISLNVDSVNSQLNIIRCVGSGMKER 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           I+P       A+ +Y      +L      +  LF    G  +    F + +++  +  G+
Sbjct: 176 IIPFGRMAAAALDDYLQNGRAELLRQSEDEPALFLNQLGTRMTRQGFWKMVKKYAKEAGI 235

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               T HTLRHSFA HLL NG DLR++Q +LGH  +STTQ YT V+       M +IY  
Sbjct: 236 SEEITPHTLRHSFAAHLLENGADLRAVQELLGHADISTTQRYTKVSKVK----MKDIYSN 291

Query: 317 THP 319
            HP
Sbjct: 292 AHP 294


>gi|168823065|ref|ZP_02835065.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|204927994|ref|ZP_03219194.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204322316|gb|EDZ07513.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205340622|gb|EDZ27386.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320087473|emb|CBY97238.1| Tyrosine recombinase xerD [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 298

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 154/304 (50%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER L++ TL +Y  D    + +L    +   T Q        +++  +++R
Sbjct: 9   EQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQA------DDLQTLLAER 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++ F ++L + K   +     + + K    LP+ L+E Q   L+
Sbjct: 63  VEGGYKATSSARLLSAMRRFFQHLYREKCREDDPSAQLASPKLPQRLPKDLSEAQVERLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG+K R
Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL       +  Y +   P+ LN ++I + LF   R + +    F   I+      G+
Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292

Query: 316 QTHP 319
           Q HP
Sbjct: 293 QHHP 296


>gi|255036556|ref|YP_003087177.1| tyrosine recombinase XerD [Dyadobacter fermentans DSM 18053]
 gi|254949312|gb|ACT94012.1| tyrosine recombinase XerD [Dyadobacter fermentans DSM 18053]
          Length = 298

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 152/310 (49%), Gaps = 24/310 (7%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +K  +N+L+   +ER LS  ++++Y  D  +   +L      K  +   R +    + AF
Sbjct: 6   IKHFKNYLR---LERSLSGNSVEAYVRDVEKLEEYLEL---SKADLAPAR-VQEEHLSAF 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +       +   S  R LSGIK+F KYL      TE    +   L +S  LPR L +  +
Sbjct: 59  LKYIAELGLAAHSQARMLSGIKAFFKYLLLENEITE----DPTELLESPRLPRKLPDVLS 114

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
              ++ +L    H T     RN AI+ +LY  GLR+SE   L   N   D   LRI GKG
Sbjct: 115 YEEIETMLSAIDHSTPE-GTRNRAIMEVLYSSGLRVSELTDLQLTNCHFDIGFLRILGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           DK+R+VP+     K    Y D     + P   + +I   +F   RG  L+  +    I+ 
Sbjct: 174 DKMRLVPIGREAIKYTQIYLDHIRNDIAPQKGSEDI---VFLNRRGGQLSRVMIFLMIKD 230

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+  + + HT RHSFATHL+  G  LR++Q +LGH  ++TT+IYT+++     D+
Sbjct: 231 TAEKAGIHKNVSPHTFRHSFATHLIEGGASLRAVQEMLGHESITTTEIYTHLDR----DY 286

Query: 310 MMEIYDQTHP 319
           + +I  + HP
Sbjct: 287 LRQIITEFHP 296


>gi|157148431|ref|YP_001455750.1| site-specific tyrosine recombinase XerD [Citrobacter koseri ATCC
           BAA-895]
 gi|157085636|gb|ABV15314.1| hypothetical protein CKO_04256 [Citrobacter koseri ATCC BAA-895]
          Length = 298

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 156/304 (51%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER L++ TL +Y  D    + +L    +   T+Q+       +++  +++R
Sbjct: 9   EQFLDALWLERNLAENTLSAYRRDLSMVVEWLHHRGKTLATVQS------DDLQTLLAER 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS  + F ++L + K   +     + + K    LP+ L+E Q   L+
Sbjct: 63  MDGGYKATSSARLLSATRRFFQHLYREKFREDDPSAQLASPKLPQRLPKDLSEAQVERLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            + ++        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG+K R
Sbjct: 123 QSPVVDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL       +  Y +   P+ LN ++I + LF   R + +    F   I+      G+
Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292

Query: 316 QTHP 319
           Q HP
Sbjct: 293 QHHP 296


>gi|262166461|ref|ZP_06034198.1| tyrosine recombinase XerD [Vibrio mimicus VM223]
 gi|262170635|ref|ZP_06038313.1| tyrosine recombinase XerD [Vibrio mimicus MB-451]
 gi|261891711|gb|EEY37697.1| tyrosine recombinase XerD [Vibrio mimicus MB-451]
 gi|262026177|gb|EEY44845.1| tyrosine recombinase XerD [Vibrio mimicus VM223]
          Length = 302

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 155/304 (50%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + +ERGL++ T+ SY  D  + L ++A   + +  +  I   S++ ++ + S  
Sbjct: 13  EQFLDAMWLERGLAENTVASYRNDLSKLLEWMA---QHQYRLDFI---SFSGLQEYQSWL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R LS I+   +YL + K+  +     + + K    LP+ L E Q     
Sbjct: 67  SEQNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLISPKLPTRLPKDLTEAQV---- 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL        I+ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG K R
Sbjct: 123 -EALLSAPDPQTPIELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVIGKGGKER 181

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VP+  +  + I E +      L L  Q    +F   RG+ +    F   I+       +
Sbjct: 182 LVPMGENAIEWI-ETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAEI 240

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            +   + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + ++++
Sbjct: 241 DVELLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHN 296

Query: 316 QTHP 319
           + HP
Sbjct: 297 EHHP 300


>gi|311234212|gb|ADP87066.1| integrase family protein [Desulfovibrio vulgaris RCH1]
          Length = 490

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/197 (40%), Positives = 109/197 (55%), Gaps = 7/197 (3%)

Query: 124 SLPRALNEKQAL-TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           +LP     ++ L T V+++   T H  + I  R+ A+  LLYG GLRISEAL L   +  
Sbjct: 246 TLPAGSTSRKPLSTAVESMSGDTLH-AEAIRRRDLALAELLYGSGLRISEALGLDVLDAD 304

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
                +R+ GKG K R+ PL  +   A+ E+       L    +  LF G RG  L+   
Sbjct: 305 PSAGVVRVLGKGSKERMSPLSDTSVDALREWLHFR-HHLASEGERALFVGARGDRLDRRQ 363

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             R I  L R  GLP S + H LRHSFATHLL  G DLRS+Q +LGH RL+TTQ YT++ 
Sbjct: 364 ATRIIDALCRRAGLPQSVSPHGLRHSFATHLLEAGADLRSVQELLGHARLATTQRYTHLT 423

Query: 303 SKNGGDWMMEIYDQTHP 319
             +    ++E+YD+ HP
Sbjct: 424 LAH----LIEVYDKAHP 436



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L ++E+E+G S  T+ +Y  D  QF   L   T E   +     ++   ++ ++++   
Sbjct: 65  FLAHVELEKGYSPATVTAYGTDLMQFHGVL---TAEGFGLDAPEDVTRRHVQRYLAELHR 121

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            +    S+ R LS +++F +Y+ + +  T   +  + N ++    PR LN  Q   L+D 
Sbjct: 122 LRTARSSVARKLSALRAFFRYMLRLRRVTADPVAAVHNPRQEKRQPRTLNVDQVFALLDT 181


>gi|46580471|ref|YP_011279.1| phage integrase family site specific recombinase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46449890|gb|AAS96539.1| site-specific recombinase, phage integrase family [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 474

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/197 (40%), Positives = 109/197 (55%), Gaps = 7/197 (3%)

Query: 124 SLPRALNEKQAL-TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           +LP     ++ L T V+++   T H  + I  R+ A+  LLYG GLRISEAL L   +  
Sbjct: 230 TLPAGSTSRKPLSTAVESMSGDTLH-AEAIRRRDLALAELLYGSGLRISEALGLDVLDAD 288

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
                +R+ GKG K R+ PL  +   A+ E+       L    +  LF G RG  L+   
Sbjct: 289 PSAGVVRVLGKGSKERMSPLSDTSVDALREWLHFR-HHLASEGERALFVGARGDRLDRRQ 347

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             R I  L R  GLP S + H LRHSFATHLL  G DLRS+Q +LGH RL+TTQ YT++ 
Sbjct: 348 ATRIIDALCRRAGLPQSVSPHGLRHSFATHLLEAGADLRSVQELLGHARLATTQRYTHLT 407

Query: 303 SKNGGDWMMEIYDQTHP 319
             +    ++E+YD+ HP
Sbjct: 408 LAH----LIEVYDKAHP 420



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L ++E+E+G S  T+ +Y  D  QF   L   T E   +     ++   ++ ++++   
Sbjct: 49  FLAHVELEKGYSPATVTAYGTDLMQFHGVL---TAEGFGLDAPEDVTRRHVQRYLAELHR 105

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            +    S+ R LS +++F +Y+ + +  T   +  + N ++    PR LN  Q   L+D 
Sbjct: 106 LRTARSSVARKLSALRAFFRYMLRLRRVTADPVAAVHNPRQEKRQPRTLNVDQVFALLDT 165


>gi|283787512|ref|YP_003367377.1| tyrosine recombinase [Citrobacter rodentium ICC168]
 gi|282950966|emb|CBG90643.1| tyrosine recombinase [Citrobacter rodentium ICC168]
          Length = 298

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/299 (30%), Positives = 146/299 (48%), Gaps = 19/299 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L +ER LS +TL++Y+   RQ    +A   E    +++ +Q     +R+F  + R +
Sbjct: 12  LRYLGVERQLSPITLKNYQ---RQLDAIIALAAEA--GLESWQQCDAAMVRSFAVRSRRK 66

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +G  SL   LS ++SF  ++        +    +   K    LP+ ++      L+D  
Sbjct: 67  GLGPASLALRLSALRSFFDWIVSEGKLNANPAKGVSAPKAPRHLPKNIDVDDVNRLLDID 126

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           L         +  R+ A+L ++YG GLR+SE + L   ++  D   + + GKG K R +P
Sbjct: 127 L------NDPLAVRDRAMLEVMYGAGLRLSELVGLDINHLDLDTGEVWVMGKGSKERRLP 180

Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +  +    I  + DL   F    N    LF    GK ++    Q+   +     GL    
Sbjct: 181 IGRNAVAWIEHWLDLRGLFGCEEN---ALFLSKLGKRISARNVQKRFAEWGIKQGLNSHV 237

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
             H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  +YD  HP
Sbjct: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 292


>gi|258508408|ref|YP_003171159.1| tyrosine recombinase XerD [Lactobacillus rhamnosus GG]
 gi|257148335|emb|CAR87308.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus GG]
          Length = 299

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 151/308 (49%), Gaps = 20/308 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++K    + + L +ER  S  T+ +Y  D ++F  FL    +         ++   +++ 
Sbjct: 1   MMKPLAAFQEYLTVERQYSPETVTAYLNDIQEFQAFL----KANGGFTDFSKVDDLDVQT 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEK 132
           +++    Q +   S+ R +S ++SF +YL +  +  + N   +  LKK +  LP+   E 
Sbjct: 57  YLTDLNKQALARTSIARKISSLRSFYRYLVRIDVV-KRNPFELVELKKQHHHLPQFFYEA 115

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L   V   T      +D RN A+L +LYG G+R+SE  +LT   +  +   L I G
Sbjct: 116 EIQELFKTVEGKTP-----LDQRNRALLEVLYGTGIRVSECANLTLNQVDFNTGLLLIHG 170

Query: 193 KGDKIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           KG+K R VP     ++A+  Y        +   D+       +F    G+P+     +  
Sbjct: 171 KGNKDRYVPFGRYAQRALQTYLKDGRQTLMNKRDVQHRF---VFVNQYGRPITARGIEYI 227

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           + QL +   L  +   H LRHSFATH+L +G DLR++Q +LGH  LSTTQIYT+V   + 
Sbjct: 228 LDQLIKQTSLIANIHPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHL 287

Query: 307 GDWMMEIY 314
            +  M+ Y
Sbjct: 288 KNEYMKYY 295


>gi|167763873|ref|ZP_02436000.1| hypothetical protein BACSTE_02254 [Bacteroides stercoris ATCC
           43183]
 gi|167697989|gb|EDS14568.1| hypothetical protein BACSTE_02254 [Bacteroides stercoris ATCC
           43183]
          Length = 316

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/289 (31%), Positives = 147/289 (50%), Gaps = 20/289 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + Q L++E+ LS  TL +Y  D ++ L FL     E I I  +   +  +++ F +  
Sbjct: 18  RKYQQYLKLEKALSPNTLDAYMTDLQKLLHFL---EGENIEIPDV---TPDDLQRFAAGL 71

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               I  RS  R LSGIKSF  +L    +  +    +   L +   +   L E   +  +
Sbjct: 72  HDIGIHPRSQARILSGIKSFFHFL----VIADYQEADPSELLEGPKIGFRLPEVLTVEEI 127

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D ++     E K    RN AIL  LY CGLR+SE  +L   ++  ++  ++++GKG K R
Sbjct: 128 DRIISTVDMEKKE-GQRNRAILETLYSCGLRVSELCNLKISDLYFEEGFIKVEGKGGKQR 186

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLN-----IQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +VP+ P   K I  ++     D NL       +  +F    G  ++  +    I++L   
Sbjct: 187 LVPISPRAIKEIKYWFA----DRNLGKIKKGYEDYVFLARWGNNISRIMVFHMIKELAEK 242

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            G+  + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++
Sbjct: 243 AGITKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHID 291


>gi|238752994|ref|ZP_04614453.1| Tyrosine recombinase xerD [Yersinia rohdei ATCC 43380]
 gi|238708782|gb|EEQ01041.1| Tyrosine recombinase xerD [Yersinia rohdei ATCC 43380]
          Length = 299

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 154/303 (50%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER L++ TL SY  D      +L     + +   +       ++++F+++R
Sbjct: 10  EQFLDALWLERNLAENTLASYRLDLHALTGWLEHNGSDLLRAGS------QDLQSFLAER 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q     
Sbjct: 64  IEGGYKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQV---- 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            + LL++ +    ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K R
Sbjct: 120 -DALLNSPNVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKER 178

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       I  Y +   P+ +N +    LF   R + +    F   I+      G+ 
Sbjct: 179 LVPLGEEAVYWIENYMEHGRPWLINGHSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGID 238

Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q
Sbjct: 239 SERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQQ 294

Query: 317 THP 319
            HP
Sbjct: 295 HHP 297


>gi|161506408|ref|YP_001573520.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867755|gb|ABX24378.1| hypothetical protein SARI_04606 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 298

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 154/304 (50%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER L++ TL +Y  D    + +L    +   T Q        +++  +++R
Sbjct: 9   EQFLDALWLERNLAENTLSAYRRDLSMVVAWLRHRGKTLATAQA------DDLQTLLAER 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++ F ++L + K   +     + + K    LP+ L+E Q   L+
Sbjct: 63  VEGGYKATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG+K R
Sbjct: 123 QAPLIEQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL       +  Y +   P+ LN ++I + LF   R + +    F   I+      G+
Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292

Query: 316 QTHP 319
           Q HP
Sbjct: 293 QHHP 296


>gi|117924957|ref|YP_865574.1| tyrosine recombinase XerD subunit [Magnetococcus sp. MC-1]
 gi|117608713|gb|ABK44168.1| tyrosine recombinase XerD subunit [Magnetococcus sp. MC-1]
          Length = 296

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 151/302 (50%), Gaps = 16/302 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L IE GL+  TL +Y  D      F A      +T+  I++    E   +I + 
Sbjct: 8   ERFLDELLIEHGLAANTLIAYRRDLDALRSFCA---SRNLTLPEIQRQDVLE---YIGEL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   ++ R LS ++   ++L  + I +E     +   K    LP  L+E +     
Sbjct: 62  AQKSLTPSTVARKLSAMRRLFRHLVDKGIRSEDPTGGVYRPKPQRKLPNTLSEAET---- 117

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL+    +  +  R++A+L L+Y  GLR+SE ++LT   + ++   +R+ GKG+K R
Sbjct: 118 -EALLYAPDTSTELGMRDAAMLELMYATGLRVSELVTLTLDGLDEENGFVRVIGKGNKER 176

Query: 199 IVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           IVP+  +  + ++ Y +      L       LF   RG  +    F   +++      + 
Sbjct: 177 IVPMGEAATEMVIRYRHSARQVLLKGGRCNDLFLSNRGAAMTRHNFWHIVKRYAYEANIM 236

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H +RH+FATHLL++G DLR++Q +LGH  +STT+IYT+V +      + +++DQ 
Sbjct: 237 KPLSPHGIRHAFATHLLNHGADLRAVQMMLGHADISTTEIYTHVANAR----LKKLHDQL 292

Query: 318 HP 319
           HP
Sbjct: 293 HP 294


>gi|254501286|ref|ZP_05113437.1| tyrosine recombinase XerD [Labrenzia alexandrii DFL-11]
 gi|222437357|gb|EEE44036.1| tyrosine recombinase XerD [Labrenzia alexandrii DFL-11]
          Length = 307

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 142/308 (46%), Gaps = 19/308 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N+L+ L  ERG ++ TL  Y  D   F  FL            + + +   I  ++S  
Sbjct: 8   ENFLEMLAAERGAAENTLAGYRRDLEDFSDFLGR--------TKLAEANSDHISGYMSDL 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +   + S  R LS +K F K+L       +     +   KK  SLP+ L+  +   L+
Sbjct: 60  TRRGFAETSQARRLSALKQFYKFLYSEGSRQDDPTRTLSAPKKRGSLPKVLSMDEVDRLI 119

Query: 139 DNV-----LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           +       + H S        R   ++ +LY  GLR+SE ++L     + D   + I+GK
Sbjct: 120 ETARQQTKVSHKSAAAALRAQRMYTLIEVLYATGLRVSELVALPVTAALRDARLIEIKGK 179

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRR 252
           G K R+VPL  + + A+  Y  L   +        LF    G   L    F R ++ L  
Sbjct: 180 GGKERLVPLSHAAQSAMKMYVGLRSAEGAYENSPWLFPSHGGSGHLTRQHFGRDLKDLAI 239

Query: 253 YLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             GL  S  + H LRH+FA+HLL NG DLR +Q +LGH  +STTQIYT+V  +     + 
Sbjct: 240 AAGLDASKVSPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDER----LR 295

Query: 312 EIYDQTHP 319
           E+ +  HP
Sbjct: 296 ELVETAHP 303


>gi|212636945|ref|YP_002313470.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella
           piezotolerans WP3]
 gi|212558429|gb|ACJ30883.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella
           piezotolerans WP3]
          Length = 300

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 145/300 (48%), Gaps = 16/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L   +GLS  TL +Y  D R F         +++    + + S  ++R +++ R  
Sbjct: 14  FLDHLWSTKGLSDNTLSAYRTDLRHF------DRHQQLKGLKLVESSQFDVRDYLATRFD 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     S  R +S ++ F  YL   K  +   +  + + K +  LP +L+E      +D 
Sbjct: 68  KGFAKTSSARMMSSLRRFFGYLVVNKQISTDPMALLESPKLARKLPDSLSEDD----IDR 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL        I+ R+ A+L LLY  GLR+SE + LT + +   Q  +RI GKG K R+V
Sbjct: 124 -LLSEPQADDPIECRDKAMLELLYATGLRVSELVGLTMEQLSLRQGLVRIVGKGGKERLV 182

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           PL       +  Y      +L    Q   LF   R + +    F   I+       +   
Sbjct: 183 PLGELAVGEVENYLKFARVELLKGKQSDVLFPSKRAQQMTRQTFWHRIKLYALRANISTE 242

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V +      +  ++ + HP
Sbjct: 243 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATAR----LASLHSEHHP 298


>gi|168702641|ref|ZP_02734918.1| integrase/recombinase [Gemmata obscuriglobus UQM 2246]
          Length = 321

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 158/318 (49%), Gaps = 29/318 (9%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           L +IV+F      ++++Q+   ERGL++ TL +Y  D  ++  ++     E++ +     
Sbjct: 7   LADIVAF------RDYIQS---ERGLAENTLLAYGRDLARYAHWV-----EQVQLPDYTH 52

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK--KRKITTESNILNMRNLKKSN 123
            +   + A+++    +++   S+ R L  +K F ++L+  +R   T  N+L+  NL +  
Sbjct: 53  PTLKHLAAYVAFLHEEQLAAPSIARHLVALKMFYRFLQLEERASATTVNLLSSPNLWER- 111

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            +P+ L      TL+                R+ A+L +LY  G R SE ++L   ++  
Sbjct: 112 -VPQVLPPPAVETLIT-----APQPGDRFHLRDRAMLEVLYATGCRASEVVNLKLNDVYL 165

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPG 241
           D    +  GKG K R+VPL      A+  Y      +       P  +F    G+PL   
Sbjct: 166 DSGFCKCVGKGSKQRVVPLNRHAVTALRAYLGGGVDEGGRPAAGPEVVFTSKTGRPLTRI 225

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                +++  +  GLP + + HTLRHSFATHLLS G DLR++Q +LGH  ++TTQIYT+V
Sbjct: 226 HLWALVKKYCKRAGLPKTVSPHTLRHSFATHLLSGGADLRTVQELLGHASIATTQIYTHV 285

Query: 302 NSKNGGDWMMEIYDQTHP 319
           +     D +  ++ Q HP
Sbjct: 286 DR----DRLKALHRQFHP 299


>gi|221134095|ref|ZP_03560400.1| tyrosine recombinase [Glaciecola sp. HTCC2999]
          Length = 304

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 150/303 (49%), Gaps = 21/303 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q + + L++ER         Y   T+   I      ++ +T++    L+  +++  +   
Sbjct: 17  QAFAEQLKVER--------QYSIHTQSAYINHILVCKDLLTLKKWSSLTVEQVKRMVGLS 68

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +   +  RS+   LS ++ F  +L ++   T++    +   K    LP+ L+ +Q   L+
Sbjct: 69  KKAGLSARSIALRLSALRQFCHFLVEQHQLTQNPAEAVNAPKMGKPLPKHLHVEQLEGLL 128

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            N    + HE     AR+ A+  L+YGCGLR+SE   L   +++DD   L + GKG K R
Sbjct: 129 -NFTPESVHE-----ARDKAMFELVYGCGLRLSEVTGLNLLDVLDDH-ILNVNGKGGKQR 181

Query: 199 IVPLLPSVRKAILEYYDL-CPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            +P+     +A+ ++      F  +     P LF   RG  L      + + QL    G+
Sbjct: 182 RLPIGEHAWRAVQDWLLWRVQFITSAAPDEPALFLSQRGGRLGNRQVAKRLTQLATKQGI 241

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRHSFATH+L + GDLR++Q +LGH  L+TTQ+YT+++ ++    +  +YD 
Sbjct: 242 DTHISPHKLRHSFATHVLESSGDLRAVQELLGHANLATTQVYTHLDFQH----LAGVYDN 297

Query: 317 THP 319
            HP
Sbjct: 298 AHP 300


>gi|42519036|ref|NP_964966.1| integrase/recombinase CodV [Lactobacillus johnsonii NCC 533]
 gi|41583323|gb|AAS08932.1| probable integrase/recombinase CodV [Lactobacillus johnsonii NCC
           533]
          Length = 307

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/316 (30%), Positives = 149/316 (47%), Gaps = 18/316 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L+K+ Q++L     ER  SK T+ SY  D  +   F     +E        Q+   ++ 
Sbjct: 7   KLIKQFQDYLN---YERNYSKNTVNSYLNDLNEAKEFF----KENGGFSGWDQVKSRDVE 59

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F+    TQ     +  R +S ++SF ++L KR++     +  +        LP+   EK
Sbjct: 60  IFLQNLATQNRSRTTQARKMSSLRSFYRFLVKREVLDNDPMQTISLRLGEKKLPQFFYEK 119

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   + D++  H       +  RN A+  L Y  G+R+SE  SL    I  D   + + G
Sbjct: 120 EMRQVFDSLAGHEK-----LVVRNRAMFELFYATGMRLSEMASLKLDQIDFDLKIILVHG 174

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQL 250
           KG+K R VP       A+ EY D   P  L  N     +F   RG+ L     +  ++Q+
Sbjct: 175 KGNKDRYVPFGKDAANALKEYCDEGRPALLGKNEDRGYVFLNNRGQKLTGRGIEYIMQQV 234

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+      H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V  K+    +
Sbjct: 235 FIKAGVGGKVHPHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKH----L 290

Query: 311 MEIYDQTHPSITQKDK 326
              Y +  P   +KD+
Sbjct: 291 QADYQKFFPRKDKKDE 306


>gi|308176942|ref|YP_003916348.1| tyrosine recombinase subunit XerD [Arthrobacter arilaitensis Re117]
 gi|307744405|emb|CBT75377.1| tyrosine recombinase subunit XerD [Arthrobacter arilaitensis Re117]
          Length = 307

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 152/308 (49%), Gaps = 16/308 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK- 77
           + +LQ+L IERGL++ TL SY  D  +++  +     E+   Q I +L+ +     +S+ 
Sbjct: 10  KRYLQHLAIERGLAENTLASYRRDLLRYVDTMQAAGVEQP--QKITELAISGYLQDLSRG 67

Query: 78  -RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             + + +  RS+ R    I+   KY +   I   +    ++      SLP+A++  Q  +
Sbjct: 68  NEKHKALSARSVARHSVAIRQLHKYWELEGICVPNPAREIQPPAIGQSLPKAISIDQVTS 127

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQGKGD 195
           ++++V + T         R+ AIL  LY  G RISE + L   ++   Q + +R+ GKG 
Sbjct: 128 ILESVSIETP-----AGLRDRAILEFLYSTGARISEVVDLDVDDLHFAQDAVVRLFGKGS 182

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R+VP+    ++A+ +Y       L    +    LF   RG  L+       + +    
Sbjct: 183 KERVVPVGGYAQRAVSDYLVRARPSLAAKGKGTPALFLNQRGGRLSRQSVWLLLSKAAER 242

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V      D + E 
Sbjct: 243 AGITTEVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTKVTV----DSLREA 298

Query: 314 YDQTHPSI 321
           Y   HP +
Sbjct: 299 YQLAHPRV 306


>gi|33595884|ref|NP_883527.1| site-specific tyrosine recombinase XerD [Bordetella parapertussis
           12822]
 gi|33565963|emb|CAE36514.1| integrase/recombinase [Bordetella parapertussis]
          Length = 310

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 143/297 (48%), Gaps = 14/297 (4%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEK--ITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +E GL+  TL +Y  D   F  +L          T  ++R+    +I A+ + R  +   
Sbjct: 22  LEDGLAANTLAAYRRDLSAFAQWLENPACHPGLATGHSLREAGKGDIEAWFAARHAESRA 81

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +  R L+ ++ F  +  + ++T     L +   K+   LP+ L+E Q   L+    L 
Sbjct: 82  T-TANRRLAALRRFYAWALRERLTPSDPCLTLVTAKQPPRLPKTLSEAQVDALLQAPDLD 140

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLL 203
           T+        R+ A+L  LY  GLR+SE +S+   ++  ++  +R+  GKG K R+VPL 
Sbjct: 141 TARGL-----RDRAMLETLYATGLRVSELVSVKALDVSLNEGVVRVVMGKGGKDRLVPLG 195

Query: 204 PSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
                 I  Y     P  L   +   LF   R +P++   F + +++      +    + 
Sbjct: 196 AEAAHWIERYAGSARPELLGARVADALFVTARAEPMSRQAFWQLVKKYALAADIRAPLSP 255

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           H LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++   HP
Sbjct: 256 HVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVACER----LKALHAAHHP 308


>gi|328955478|ref|YP_004372811.1| integrase family protein [Coriobacterium glomerans PW2]
 gi|328455802|gb|AEB06996.1| integrase family protein [Coriobacterium glomerans PW2]
          Length = 304

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 146/297 (49%), Gaps = 22/297 (7%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G S  T ++YE   R +L +     + +  +  +  L    +R++++     +   R++ 
Sbjct: 19  GCSPETARAYEGHLRAYLSW-----QRRAHLDGL-VLEVPVVRSYLADLYDARRSPRTIA 72

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             LS I+S  ++L    IT    +  M+  +    LPR L ++Q   L+   L  T+  T
Sbjct: 73  AHLSAIRSLSRWLLLEGITKTDAVATMQTPRIPTGLPRTLTQQQMEQLL--ALPDTASPT 130

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
               +R++AIL LLY  G RISE  +L   ++  +Q  +R+ GKG K RIVPL     + 
Sbjct: 131 G---SRDAAILELLYASGARISEIAALDIASLDAEQRCVRLLGKGSKERIVPLYRRALRR 187

Query: 210 ILEYYDLC-PFDLNLNI------QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           ++ Y D   P  +          +  LF   RG+ ++    +   R   R  GLP   T 
Sbjct: 188 LVSYLDEGRPLLIRSRTLASDSDRTALFLSRRGRRMSADSLRCRFRAYARIAGLPADITP 247

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           H +RH+FAT LL+ G D+RS+Q +LGH  L+TTQ+YT++  +     M +   + HP
Sbjct: 248 HAMRHTFATDLLAGGADMRSVQELLGHASLATTQLYTHLTPER----MKDALRRAHP 300


>gi|209965952|ref|YP_002298867.1| tyrosine recombinase XerD [Rhodospirillum centenum SW]
 gi|209959418|gb|ACJ00055.1| tyrosine recombinase XerD [Rhodospirillum centenum SW]
          Length = 330

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/310 (31%), Positives = 146/310 (47%), Gaps = 24/310 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK--R 78
           +L  L  ERG +  T  +Y  D R    FLA     +     + + S  ++RA++    R
Sbjct: 26  FLDMLVAERGAAANTRDAYARDLRDVAAFLA----ARRGGTALDRASTDDLRAYLEHLHR 81

Query: 79  RTQKI--GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            T K     R++ R LS ++ + ++L    +  E     +   K   SLP+ L E     
Sbjct: 82  DTGKTPSAGRTVARRLSALRQYYRFLVSEGLRAEDPAAVLDGPKPGRSLPKILTEADVAL 141

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L++        E +    R +A+L LLY  GLR+SE + L    +  D   L ++GKG K
Sbjct: 142 LLEGAARRGGPEGR----RLTALLELLYATGLRVSELVGLPLAALTRDGRALVVRGKGGK 197

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL----NLNIQLPLF--RGIRGKPLNPGVFQRYIRQL 250
            R+VPL    ++A+       P+ +        Q  LF  R   G  L    F + +++L
Sbjct: 198 ERMVPLSQPAKEALAACLPDRPYFMVPGREARQQGLLFPSRSAAGV-LTRQRFGQLMKEL 256

Query: 251 RRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
              +GL P   + H LRH FATHLL +G DLRS+Q +LGH  + TTQIYT+V     GD 
Sbjct: 257 ALEVGLDPGKVSPHVLRHCFATHLLDHGADLRSVQKMLGHADIGTTQIYTHVA----GDR 312

Query: 310 MMEIYDQTHP 319
           +    +  HP
Sbjct: 313 LRRTVETHHP 322


>gi|330836616|ref|YP_004411257.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374]
 gi|329748519|gb|AEC01875.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374]
          Length = 309

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/328 (32%), Positives = 163/328 (49%), Gaps = 29/328 (8%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +P     +LL+E   + ++L +ER LS  T+  Y    R+++ FL     E   I     
Sbjct: 1   MPSSAISQLLEE---YREHLLLERRLSPATVNVYVPVVREYVSFL-----ETRGIGAEEA 52

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
            + T    FI K +   +G R+L R++S ++SF ++L    I  +    N   L  S  L
Sbjct: 53  QADTISGYFIHKGQA-GLGTRTLARNMSALRSFHRFLLLNDIRND----NPFELLDSPKL 107

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNI 181
           PR L        VD++L    HE +  DA    R+ AI  ++Y CGLR+SE  SL  ++ 
Sbjct: 108 PRTLPRTMDYDSVDDIL----HEMELDDAIYARRDRAIFEVIYSCGLRVSELASLRIEDY 163

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCP-FDLNLNIQLPLFRGIRGKPLN 239
             +   LRI GK +K RIVP+     + I EY   + P F         LF    G+ L+
Sbjct: 164 SPESRLLRITGKRNKQRIVPVGDVAAELIDEYIISVRPAFIPKGRSSRFLFLNRYGQSLS 223

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
             +  +  ++    +G+      HTLRHS+ATHLL  G DLRS+Q +LGH  + TTQIYT
Sbjct: 224 RVMIWKLFKKYCMRIGV--EAKVHTLRHSYATHLLKAGADLRSVQELLGHSDIRTTQIYT 281

Query: 300 NVNSKNGGDWMMEIYDQTHPSITQKDKK 327
           +V++ +    + E + + HP   Q + +
Sbjct: 282 HVDTTD----LQEQFRRFHPDAGQSENE 305


>gi|33592631|ref|NP_880275.1| site-specific tyrosine recombinase XerD [Bordetella pertussis
           Tohama I]
 gi|33572277|emb|CAE41829.1| integrase/recombinase [Bordetella pertussis Tohama I]
 gi|332382048|gb|AEE66895.1| site-specific tyrosine recombinase XerD [Bordetella pertussis CS]
          Length = 310

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 140/281 (49%), Gaps = 14/281 (4%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEK--ITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +E GL+  TL +Y  D   F  +L          T  ++R+    +I A+ + R  +   
Sbjct: 22  LEDGLAANTLAAYRRDLSAFAQWLENLACHPGLATGASLREAGKGDIEAWFAARHAESRA 81

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +  R L+ ++ F  +  + ++T     L +   K+   LP+ L+E Q   L+    L 
Sbjct: 82  T-TANRRLAALRRFYAWALRERLTPSDPCLTLVTAKQPPRLPKTLSEAQVDALLQAPDLD 140

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLL 203
           T+        R+ A+L  LY  GLR+SE +S+   ++  ++  +R+  GKG K R+VPL 
Sbjct: 141 TARGL-----RDRAMLETLYATGLRVSELVSVKALDVSLNEGVVRVVMGKGGKDRLVPLG 195

Query: 204 PSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ--LRRYLGLPLST 260
                 I  Y     P  L   +   LF   R +P++   F + +++  L   +  PLS 
Sbjct: 196 AEAAHWIERYAGSARPELLGARVADALFVTARAEPMSRQAFWQLVKKYALAADIHAPLSP 255

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             H LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 256 --HVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHV 294


>gi|215489139|ref|YP_002331570.1| site-specific tyrosine recombinase XerC [Escherichia coli O127:H6
           str. E2348/69]
 gi|312969461|ref|ZP_07783663.1| tyrosine recombinase XerC [Escherichia coli 2362-75]
 gi|254799331|sp|B7UNC8|XERC_ECO27 RecName: Full=Tyrosine recombinase xerC
 gi|215267211|emb|CAS11659.1| site-specific tyrosine recombinase XerC [Escherichia coli O127:H6
           str. E2348/69]
 gi|312286008|gb|EFR13926.1| tyrosine recombinase XerC [Escherichia coli 2362-75]
 gi|320197620|gb|EFW72232.1| Tyrosine recombinase XerC [Escherichia coli WV_060327]
 gi|325499220|gb|EGC97079.1| site-specific tyrosine recombinase XerC [Escherichia fergusonii
           ECD227]
          Length = 298

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 154/307 (50%), Gaps = 17/307 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+   RQ    + F +E    +Q+ +Q   T +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--GLQSWQQCDVTMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   +L  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--NLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHP 319
           +YD  HP
Sbjct: 286 VYDAAHP 292


>gi|256379909|ref|YP_003103569.1| integrase family protein [Actinosynnema mirum DSM 43827]
 gi|255924212|gb|ACU39723.1| integrase family protein [Actinosynnema mirum DSM 43827]
          Length = 325

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 150/316 (47%), Gaps = 13/316 (4%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
            LP  V+  L      + ++L +ERGLS  T+++Y  D    L+ LA  T    T++++ 
Sbjct: 20  ELPSDVATAL----DAYERHLSLERGLSPHTVRAYLGDAVALLVHLAAGTPGDATVESVD 75

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            L    +R++++ +  +     ++ R  +  ++   +  +  +  E     +   +   +
Sbjct: 76  LLG---LRSWLAAQHAEGASRTTMARRAASARALTAWAARTGLLAEDPGPRLNAPRPHRT 132

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  +   QA   ++            +  R+ A++ LLY  G+R++E   L   ++   
Sbjct: 133 LPVVVRPDQAGAALEAAAAGADQHDP-VALRDRAVVELLYASGVRVAELCGLDLDDVDYS 191

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVF 243
           Q  +R+ GKG + R VP      +A+ ++ DL    L        LF G RG  L+P   
Sbjct: 192 QRVIRVLGKGSRERTVPFGVPAERAVRQWADLGRSALVTERSHRALFLGARGGRLDPRTA 251

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +R +  +   +        H LRHS ATHLL  G DLR++Q +LGH  L+TTQ+YT+V  
Sbjct: 252 RRVVHDVMGAVPGSADVGPHGLRHSAATHLLEGGADLRTVQELLGHATLATTQLYTHVTV 311

Query: 304 KNGGDWMMEIYDQTHP 319
           +     +  I+D+THP
Sbjct: 312 ER----LKAIHDRTHP 323


>gi|16761825|ref|NP_457442.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16766345|ref|NP_461960.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29143312|ref|NP_806654.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62181554|ref|YP_217971.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161615991|ref|YP_001589956.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167550072|ref|ZP_02343829.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167994107|ref|ZP_02575199.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168231149|ref|ZP_02656207.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168236103|ref|ZP_02661161.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168261794|ref|ZP_02683767.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168463788|ref|ZP_02697705.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|194446221|ref|YP_002042295.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194470177|ref|ZP_03076161.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194471635|ref|ZP_03077619.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194738371|ref|YP_002115993.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197249597|ref|YP_002147956.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197265258|ref|ZP_03165332.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|198244272|ref|YP_002217021.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200387943|ref|ZP_03214555.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205353968|ref|YP_002227769.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207858307|ref|YP_002244958.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213051988|ref|ZP_03344866.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213425823|ref|ZP_03358573.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213646964|ref|ZP_03377017.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213857737|ref|ZP_03384708.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|224584833|ref|YP_002638631.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238909843|ref|ZP_04653680.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|60416276|sp|P0A2P6|XERD_SALTY RecName: Full=Tyrosine recombinase xerD
 gi|60416277|sp|P0A2P7|XERD_SALTI RecName: Full=Tyrosine recombinase xerD
 gi|25299270|pir||AB0872 site-specific integrase/recombinase [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16421595|gb|AAL21919.1| site-specific recombinase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16504127|emb|CAD02874.1| site-specific integrase/recombinase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138946|gb|AAO70514.1| site-specific integrase/recombinase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62129187|gb|AAX66890.1| recombinase, site-specific [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161365355|gb|ABX69123.1| hypothetical protein SPAB_03791 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404884|gb|ACF65106.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194456541|gb|EDX45380.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194457999|gb|EDX46838.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194713873|gb|ACF93094.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195633587|gb|EDX52001.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197213300|gb|ACH50697.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197243513|gb|EDY26133.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197290855|gb|EDY30209.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|197938788|gb|ACH76121.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199605041|gb|EDZ03586.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205273749|emb|CAR38744.1| site-specific integrase/recombinase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205324693|gb|EDZ12532.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205327977|gb|EDZ14741.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205334414|gb|EDZ21178.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205349044|gb|EDZ35675.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206710110|emb|CAR34465.1| site-specific integrase/recombinase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224469360|gb|ACN47190.1| tyrosine recombinase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261248176|emb|CBG26012.1| Tyrosine recombinase xerD [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995198|gb|ACY90083.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159600|emb|CBW19119.1| Tyrosine recombinase xerD [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312914065|dbj|BAJ38039.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321225719|gb|EFX50773.1| Tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322613442|gb|EFY10383.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322621034|gb|EFY17892.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322624098|gb|EFY20932.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628163|gb|EFY24952.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633282|gb|EFY30024.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636140|gb|EFY32848.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639478|gb|EFY36166.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647589|gb|EFY44078.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322648773|gb|EFY45220.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322653828|gb|EFY50154.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657934|gb|EFY54202.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664037|gb|EFY60236.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668952|gb|EFY65103.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673054|gb|EFY69161.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677955|gb|EFY74018.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681131|gb|EFY77164.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687939|gb|EFY83906.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322716035|gb|EFZ07606.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323131400|gb|ADX18830.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323194865|gb|EFZ80052.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323196616|gb|EFZ81764.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202684|gb|EFZ87724.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207829|gb|EFZ92775.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323212619|gb|EFZ97436.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323214898|gb|EFZ99646.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323222629|gb|EGA06994.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323225092|gb|EGA09344.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323230614|gb|EGA14732.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323235035|gb|EGA19121.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239074|gb|EGA23124.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244568|gb|EGA28574.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247183|gb|EGA31149.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253334|gb|EGA37163.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256359|gb|EGA40095.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262465|gb|EGA46021.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267439|gb|EGA50923.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269157|gb|EGA52612.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326624789|gb|EGE31134.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326629082|gb|EGE35425.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332989911|gb|AEF08894.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 298

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 154/304 (50%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER L++ TL +Y  D    + +L    +   T Q        +++  +++R
Sbjct: 9   EQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQA------DDLQTLLAER 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++ F ++L + K   +     + + K    LP+ L+E Q   L+
Sbjct: 63  VEGGYKATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG+K R
Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL       +  Y +   P+ LN ++I + LF   R + +    F   I+      G+
Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292

Query: 316 QTHP 319
           Q HP
Sbjct: 293 QHHP 296


>gi|269959610|ref|ZP_06173991.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835668|gb|EEZ89746.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 305

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 149/303 (49%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + +ERGLS+ TL SY  D    +  LA+  +    +  I      E ++++   
Sbjct: 16  EQFLDAMWMERGLSENTLASYRND---LMKLLAWMEQHSYRLDFISLSGLQEYQSYLVDL 72

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             ++    S  R LS I+   +Y+ + K+  +     + + K    LP+ ++E+Q     
Sbjct: 73  DYKQT---SRARMLSAIRRLFQYIHREKVRADDPSALLVSPKLPQRLPKDISEEQV---- 125

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            + LL        ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG K R
Sbjct: 126 -DALLDAPDPNDPVELRDKAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGGKER 184

Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+  +    I  +       L        +F   R + +    F   I+      G+ 
Sbjct: 185 LVPMGENAVDWIETFIQQGRSALLGETTSDVVFPSKRARQMTRQTFWHRIKYYAVIAGID 244

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +I+ Q
Sbjct: 245 TDQLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIHSQ 300

Query: 317 THP 319
            HP
Sbjct: 301 HHP 303


>gi|313901171|ref|ZP_07834659.1| tyrosine recombinase XerC [Clostridium sp. HGF2]
 gi|312954129|gb|EFR35809.1| tyrosine recombinase XerC [Clostridium sp. HGF2]
          Length = 302

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/311 (29%), Positives = 153/311 (49%), Gaps = 23/311 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +LQ ++     S  T  +Y+ D R+F+ FL     ++  I+ ++      +  +I+  R 
Sbjct: 8   FLQYMDSLNSGSVHTRAAYQRDIREFISFL-----QEEGIEELQDADRIIVMNYIASLRE 62

Query: 81  Q-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +     ++ + ++ R LS ++SF +YL +    T++  L  +  K++  +P  L   +  
Sbjct: 63  KPGVSGEMKNSTIARKLSSLRSFYRYLNEYVGITQNPFLYFKTPKRAKRIPEFLFYDEMD 122

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           T + +  L T         R+ A+  L+Y CGLR+SEA SL   +I      L I GKG+
Sbjct: 123 TFLSSFDLDTPD-----GLRDRAMFELMYACGLRVSEAASLRLYDIDLHDRILTIHGKGN 177

Query: 196 KIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K RIVP   ++   +LE+Y  ++ P  +     + +F   RGK L     Q  ++     
Sbjct: 178 KQRIVPFY-ALAGELLEHYLQEVRPQWMKEEHDI-VFINQRGKGLTTRGIQYRMQLAADT 235

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L +    H  RHSFATHLL NG DLR +Q +LGH  LSTTQ+Y +V  +     + + 
Sbjct: 236 CSLSVHVHPHMFRHSFATHLLDNGADLRVVQELLGHASLSTTQVYVHVTQER----LKKA 291

Query: 314 YDQTHPSITQK 324
           Y   HP   +K
Sbjct: 292 YTHAHPRAQEK 302


>gi|16130796|ref|NP_417370.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. MG1655]
 gi|26249309|ref|NP_755349.1| site-specific tyrosine recombinase XerD [Escherichia coli CFT073]
 gi|74313452|ref|YP_311871.1| site-specific tyrosine recombinase XerD [Shigella sonnei Ss046]
 gi|82545483|ref|YP_409430.1| site-specific tyrosine recombinase XerD [Shigella boydii Sb227]
 gi|82778340|ref|YP_404689.1| site-specific tyrosine recombinase XerD [Shigella dysenteriae
           Sd197]
 gi|89109673|ref|AP_003453.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. W3110]
 gi|110643042|ref|YP_670772.1| site-specific tyrosine recombinase XerD [Escherichia coli 536]
 gi|110806797|ref|YP_690317.1| site-specific tyrosine recombinase XerD [Shigella flexneri 5 str.
           8401]
 gi|157158312|ref|YP_001464231.1| site-specific tyrosine recombinase XerD [Escherichia coli E24377A]
 gi|168747627|ref|ZP_02772649.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4113]
 gi|168753832|ref|ZP_02778839.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4401]
 gi|168766887|ref|ZP_02791894.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4486]
 gi|168775771|ref|ZP_02800778.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4196]
 gi|168778907|ref|ZP_02803914.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4076]
 gi|168785740|ref|ZP_02810747.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC869]
 gi|168800027|ref|ZP_02825034.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC508]
 gi|170082455|ref|YP_001731775.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. DH10B]
 gi|170681991|ref|YP_001745047.1| site-specific tyrosine recombinase XerD [Escherichia coli SMS-3-5]
 gi|187732006|ref|YP_001881663.1| site-specific tyrosine recombinase XerD [Shigella boydii CDC
           3083-94]
 gi|188496120|ref|ZP_03003390.1| tyrosine recombinase XerD [Escherichia coli 53638]
 gi|191166010|ref|ZP_03027846.1| tyrosine recombinase XerD [Escherichia coli B7A]
 gi|191173237|ref|ZP_03034768.1| tyrosine recombinase XerD [Escherichia coli F11]
 gi|193063471|ref|ZP_03044560.1| tyrosine recombinase XerD [Escherichia coli E22]
 gi|193070556|ref|ZP_03051495.1| tyrosine recombinase XerD [Escherichia coli E110019]
 gi|194426297|ref|ZP_03058852.1| tyrosine recombinase XerD [Escherichia coli B171]
 gi|194431675|ref|ZP_03063966.1| tyrosine recombinase XerD [Shigella dysenteriae 1012]
 gi|194436800|ref|ZP_03068900.1| tyrosine recombinase XerD [Escherichia coli 101-1]
 gi|195936512|ref|ZP_03081894.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           str. EC4024]
 gi|208806438|ref|ZP_03248775.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4206]
 gi|208814608|ref|ZP_03255937.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4045]
 gi|208820065|ref|ZP_03260385.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4042]
 gi|209398903|ref|YP_002272368.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4115]
 gi|209920348|ref|YP_002294432.1| site-specific tyrosine recombinase XerD [Escherichia coli SE11]
 gi|215488194|ref|YP_002330625.1| site-specific tyrosine recombinase XerD [Escherichia coli O127:H6
           str. E2348/69]
 gi|218555442|ref|YP_002388355.1| site-specific tyrosine recombinase XerD [Escherichia coli IAI1]
 gi|218691019|ref|YP_002399231.1| site-specific tyrosine recombinase XerD [Escherichia coli ED1a]
 gi|218696489|ref|YP_002404156.1| site-specific tyrosine recombinase XerD [Escherichia coli 55989]
 gi|227888443|ref|ZP_04006248.1| site-specific tyrosine recombinase [Escherichia coli 83972]
 gi|238902019|ref|YP_002927815.1| site-specific tyrosine recombinase [Escherichia coli BW2952]
 gi|253772265|ref|YP_003035096.1| site-specific tyrosine recombinase XerD [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162806|ref|YP_003045914.1| site-specific tyrosine recombinase XerD [Escherichia coli B str.
           REL606]
 gi|254794844|ref|YP_003079681.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           str. TW14359]
 gi|256019308|ref|ZP_05433173.1| site-specific tyrosine recombinase XerD [Shigella sp. D9]
 gi|256024596|ref|ZP_05438461.1| site-specific tyrosine recombinase XerD [Escherichia sp. 4_1_40B]
 gi|260845562|ref|YP_003223340.1| site-specific tyrosine recombinase XerD [Escherichia coli O103:H2
           str. 12009]
 gi|260857017|ref|YP_003230908.1| site-specific tyrosine recombinase XerD [Escherichia coli O26:H11
           str. 11368]
 gi|260869571|ref|YP_003235973.1| site-specific tyrosine recombinase XerD [Escherichia coli O111:H-
           str. 11128]
 gi|261226207|ref|ZP_05940488.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256538|ref|ZP_05949071.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           str. FRIK966]
 gi|291284213|ref|YP_003501031.1| Tyrosine recombinase xerD [Escherichia coli O55:H7 str. CB9615]
 gi|293412253|ref|ZP_06654976.1| tyrosine recombinase XerD [Escherichia coli B354]
 gi|293416147|ref|ZP_06658787.1| tyrosine recombinase XerD [Escherichia coli B185]
 gi|293449216|ref|ZP_06663637.1| tyrosine recombinase XerD [Escherichia coli B088]
 gi|297521422|ref|ZP_06939808.1| site-specific tyrosine recombinase XerD [Escherichia coli OP50]
 gi|300815654|ref|ZP_07095878.1| tyrosine recombinase XerD [Escherichia coli MS 107-1]
 gi|300820698|ref|ZP_07100849.1| tyrosine recombinase XerD [Escherichia coli MS 119-7]
 gi|300906556|ref|ZP_07124247.1| tyrosine recombinase XerD [Escherichia coli MS 84-1]
 gi|300921226|ref|ZP_07137599.1| tyrosine recombinase XerD [Escherichia coli MS 115-1]
 gi|300925125|ref|ZP_07141039.1| tyrosine recombinase XerD [Escherichia coli MS 182-1]
 gi|300928170|ref|ZP_07143712.1| tyrosine recombinase XerD [Escherichia coli MS 187-1]
 gi|300936040|ref|ZP_07150988.1| tyrosine recombinase XerD [Escherichia coli MS 21-1]
 gi|300947617|ref|ZP_07161788.1| tyrosine recombinase XerD [Escherichia coli MS 116-1]
 gi|300954266|ref|ZP_07166729.1| tyrosine recombinase XerD [Escherichia coli MS 175-1]
 gi|300980312|ref|ZP_07174966.1| tyrosine recombinase XerD [Escherichia coli MS 45-1]
 gi|300995674|ref|ZP_07181202.1| tyrosine recombinase XerD [Escherichia coli MS 200-1]
 gi|301027808|ref|ZP_07191113.1| tyrosine recombinase XerD [Escherichia coli MS 196-1]
 gi|301049322|ref|ZP_07196292.1| tyrosine recombinase XerD [Escherichia coli MS 185-1]
 gi|301303052|ref|ZP_07209179.1| tyrosine recombinase XerD [Escherichia coli MS 124-1]
 gi|301327295|ref|ZP_07220551.1| tyrosine recombinase XerD [Escherichia coli MS 78-1]
 gi|301643756|ref|ZP_07243794.1| tyrosine recombinase XerD [Escherichia coli MS 146-1]
 gi|307139581|ref|ZP_07498937.1| site-specific tyrosine recombinase XerD [Escherichia coli H736]
 gi|307310487|ref|ZP_07590135.1| tyrosine recombinase XerD [Escherichia coli W]
 gi|309785299|ref|ZP_07679930.1| tyrosine recombinase XerD [Shigella dysenteriae 1617]
 gi|312964846|ref|ZP_07779086.1| tyrosine recombinase XerD [Escherichia coli 2362-75]
 gi|331643584|ref|ZP_08344715.1| tyrosine recombinase XerD [Escherichia coli H736]
 gi|331648640|ref|ZP_08349728.1| tyrosine recombinase XerD [Escherichia coli M605]
 gi|331659024|ref|ZP_08359966.1| tyrosine recombinase XerD [Escherichia coli TA206]
 gi|331664467|ref|ZP_08365373.1| tyrosine recombinase XerD [Escherichia coli TA143]
 gi|331669629|ref|ZP_08370475.1| tyrosine recombinase XerD [Escherichia coli TA271]
 gi|331674379|ref|ZP_08375139.1| tyrosine recombinase XerD [Escherichia coli TA280]
 gi|331678881|ref|ZP_08379555.1| tyrosine recombinase XerD [Escherichia coli H591]
 gi|331684520|ref|ZP_08385112.1| tyrosine recombinase XerD [Escherichia coli H299]
 gi|332280422|ref|ZP_08392835.1| tyrosine recombinase xerD [Shigella sp. D9]
 gi|67475548|sp|P0A8P8|XERD_ECOLI RecName: Full=Tyrosine recombinase xerD
 gi|67475549|sp|P0A8P9|XERD_ECOL6 RecName: Full=Tyrosine recombinase xerD
 gi|26109717|gb|AAN81922.1|AE016766_10 Integrase/recombinase xerD [Escherichia coli CFT073]
 gi|147548|gb|AAA62787.1| xprB [Escherichia coli]
 gi|887844|gb|AAA83075.1| site-specific integrase/recombinase, with xerC [Escherichia coli]
 gi|1789261|gb|AAC75932.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. MG1655]
 gi|73856929|gb|AAZ89636.1| site-specific recombinase [Shigella sonnei Ss046]
 gi|81242488|gb|ABB63198.1| site-specific recombinase [Shigella dysenteriae Sd197]
 gi|81246894|gb|ABB67602.1| site-specific recombinase [Shigella boydii Sb227]
 gi|85675706|dbj|BAE76959.1| site-specific tyrosine recombinase [Escherichia coli str. K12
           substr. W3110]
 gi|110344634|gb|ABG70871.1| integrase/recombinase XerD [Escherichia coli 536]
 gi|110616345|gb|ABF05012.1| site-specific recombinase [Shigella flexneri 5 str. 8401]
 gi|157080342|gb|ABV20050.1| tyrosine recombinase XerD [Escherichia coli E24377A]
 gi|169890290|gb|ACB03997.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. DH10B]
 gi|170519709|gb|ACB17887.1| tyrosine recombinase XerD [Escherichia coli SMS-3-5]
 gi|187428998|gb|ACD08272.1| tyrosine recombinase XerD [Shigella boydii CDC 3083-94]
 gi|187768812|gb|EDU32656.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4196]
 gi|188017752|gb|EDU55874.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4113]
 gi|188491319|gb|EDU66422.1| tyrosine recombinase XerD [Escherichia coli 53638]
 gi|189003626|gb|EDU72612.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4076]
 gi|189358670|gb|EDU77089.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4401]
 gi|189363773|gb|EDU82192.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4486]
 gi|189373936|gb|EDU92352.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC869]
 gi|189377626|gb|EDU96042.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC508]
 gi|190903958|gb|EDV63671.1| tyrosine recombinase XerD [Escherichia coli B7A]
 gi|190906488|gb|EDV66096.1| tyrosine recombinase XerD [Escherichia coli F11]
 gi|192930748|gb|EDV83353.1| tyrosine recombinase XerD [Escherichia coli E22]
 gi|192956139|gb|EDV86603.1| tyrosine recombinase XerD [Escherichia coli E110019]
 gi|194415605|gb|EDX31872.1| tyrosine recombinase XerD [Escherichia coli B171]
 gi|194420031|gb|EDX36109.1| tyrosine recombinase XerD [Shigella dysenteriae 1012]
 gi|194424282|gb|EDX40269.1| tyrosine recombinase XerD [Escherichia coli 101-1]
 gi|208726239|gb|EDZ75840.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4206]
 gi|208735885|gb|EDZ84572.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4045]
 gi|208740188|gb|EDZ87870.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4042]
 gi|209160303|gb|ACI37736.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4115]
 gi|209760578|gb|ACI78601.1| site-specific recombinase [Escherichia coli]
 gi|209760582|gb|ACI78603.1| site-specific recombinase [Escherichia coli]
 gi|209760584|gb|ACI78604.1| site-specific recombinase [Escherichia coli]
 gi|209760586|gb|ACI78605.1| site-specific recombinase [Escherichia coli]
 gi|209913607|dbj|BAG78681.1| site-specific recombinase [Escherichia coli SE11]
 gi|215266266|emb|CAS10695.1| site-specific tyrosine recombinase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218353221|emb|CAU99139.1| site-specific tyrosine recombinase [Escherichia coli 55989]
 gi|218362210|emb|CAQ99828.1| site-specific tyrosine recombinase [Escherichia coli IAI1]
 gi|218428583|emb|CAR09510.2| site-specific tyrosine recombinase [Escherichia coli ED1a]
 gi|222034589|emb|CAP77331.1| Tyrosine recombinase xerD [Escherichia coli LF82]
 gi|227834712|gb|EEJ45178.1| site-specific tyrosine recombinase [Escherichia coli 83972]
 gi|238863557|gb|ACR65555.1| site-specific tyrosine recombinase [Escherichia coli BW2952]
 gi|242378425|emb|CAQ33206.1| site-specific recombinase, subunit of Xer site-specific
           recombination system [Escherichia coli BL21(DE3)]
 gi|253323309|gb|ACT27911.1| tyrosine recombinase XerD [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253974707|gb|ACT40378.1| site-specific tyrosine recombinase XerD [Escherichia coli B str.
           REL606]
 gi|253978873|gb|ACT44543.1| site-specific tyrosine recombinase XerD [Escherichia coli
           BL21(DE3)]
 gi|254594244|gb|ACT73605.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str.
           TW14359]
 gi|257755666|dbj|BAI27168.1| site-specific tyrosine recombinase XerD [Escherichia coli O26:H11
           str. 11368]
 gi|257760709|dbj|BAI32206.1| site-specific tyrosine recombinase XerD [Escherichia coli O103:H2
           str. 12009]
 gi|257765927|dbj|BAI37422.1| site-specific tyrosine recombinase XerD [Escherichia coli O111:H-
           str. 11128]
 gi|260448060|gb|ACX38482.1| tyrosine recombinase XerD [Escherichia coli DH1]
 gi|281179899|dbj|BAI56229.1| site-specific recombinase [Escherichia coli SE15]
 gi|284922842|emb|CBG35931.1| tyrosine recombinase [Escherichia coli 042]
 gi|290764086|gb|ADD58047.1| Tyrosine recombinase xerD [Escherichia coli O55:H7 str. CB9615]
 gi|291322306|gb|EFE61735.1| tyrosine recombinase XerD [Escherichia coli B088]
 gi|291432336|gb|EFF05318.1| tyrosine recombinase XerD [Escherichia coli B185]
 gi|291469024|gb|EFF11515.1| tyrosine recombinase XerD [Escherichia coli B354]
 gi|299879070|gb|EFI87281.1| tyrosine recombinase XerD [Escherichia coli MS 196-1]
 gi|300298921|gb|EFJ55306.1| tyrosine recombinase XerD [Escherichia coli MS 185-1]
 gi|300304782|gb|EFJ59302.1| tyrosine recombinase XerD [Escherichia coli MS 200-1]
 gi|300318727|gb|EFJ68511.1| tyrosine recombinase XerD [Escherichia coli MS 175-1]
 gi|300401595|gb|EFJ85133.1| tyrosine recombinase XerD [Escherichia coli MS 84-1]
 gi|300409320|gb|EFJ92858.1| tyrosine recombinase XerD [Escherichia coli MS 45-1]
 gi|300411832|gb|EFJ95142.1| tyrosine recombinase XerD [Escherichia coli MS 115-1]
 gi|300418727|gb|EFK02038.1| tyrosine recombinase XerD [Escherichia coli MS 182-1]
 gi|300452792|gb|EFK16412.1| tyrosine recombinase XerD [Escherichia coli MS 116-1]
 gi|300458832|gb|EFK22325.1| tyrosine recombinase XerD [Escherichia coli MS 21-1]
 gi|300463810|gb|EFK27303.1| tyrosine recombinase XerD [Escherichia coli MS 187-1]
 gi|300526962|gb|EFK48031.1| tyrosine recombinase XerD [Escherichia coli MS 119-7]
 gi|300531583|gb|EFK52645.1| tyrosine recombinase XerD [Escherichia coli MS 107-1]
 gi|300841716|gb|EFK69476.1| tyrosine recombinase XerD [Escherichia coli MS 124-1]
 gi|300846158|gb|EFK73918.1| tyrosine recombinase XerD [Escherichia coli MS 78-1]
 gi|301077855|gb|EFK92661.1| tyrosine recombinase XerD [Escherichia coli MS 146-1]
 gi|306909382|gb|EFN39877.1| tyrosine recombinase XerD [Escherichia coli W]
 gi|307554870|gb|ADN47645.1| site-specific tyrosine recombinase XerD [Escherichia coli ABU
           83972]
 gi|308926419|gb|EFP71895.1| tyrosine recombinase XerD [Shigella dysenteriae 1617]
 gi|309703254|emb|CBJ02589.1| tyrosine recombinase [Escherichia coli ETEC H10407]
 gi|312290402|gb|EFR18282.1| tyrosine recombinase XerD [Escherichia coli 2362-75]
 gi|312947427|gb|ADR28254.1| site-specific tyrosine recombinase XerD [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315062198|gb|ADT76525.1| site-specific tyrosine recombinase [Escherichia coli W]
 gi|315137493|dbj|BAJ44652.1| tyrosine recombinase xerD [Escherichia coli DH1]
 gi|315256777|gb|EFU36745.1| tyrosine recombinase XerD [Escherichia coli MS 85-1]
 gi|315293873|gb|EFU53225.1| tyrosine recombinase XerD [Escherichia coli MS 153-1]
 gi|315295682|gb|EFU55002.1| tyrosine recombinase XerD [Escherichia coli MS 16-3]
 gi|315614950|gb|EFU95588.1| tyrosine recombinase XerD [Escherichia coli 3431]
 gi|320175918|gb|EFW50996.1| Tyrosine recombinase XerD [Shigella dysenteriae CDC 74-1112]
 gi|320182203|gb|EFW57106.1| Tyrosine recombinase XerD [Shigella boydii ATCC 9905]
 gi|320184562|gb|EFW59363.1| Tyrosine recombinase XerD [Shigella flexneri CDC 796-83]
 gi|320189238|gb|EFW63897.1| Tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC1212]
 gi|320195013|gb|EFW69642.1| Tyrosine recombinase XerD [Escherichia coli WV_060327]
 gi|320202554|gb|EFW77124.1| Tyrosine recombinase XerD [Escherichia coli EC4100B]
 gi|320640537|gb|EFX10076.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           str. G5101]
 gi|320645784|gb|EFX14769.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H-
           str. 493-89]
 gi|320651084|gb|EFX19524.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H-
           str. H 2687]
 gi|320656580|gb|EFX24476.1| site-specific tyrosine recombinase XerD [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320662100|gb|EFX29501.1| site-specific tyrosine recombinase XerD [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320667175|gb|EFX34138.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           str. LSU-61]
 gi|323162515|gb|EFZ48365.1| tyrosine recombinase XerD [Escherichia coli E128010]
 gi|323167900|gb|EFZ53590.1| tyrosine recombinase XerD [Shigella sonnei 53G]
 gi|323180338|gb|EFZ65890.1| tyrosine recombinase XerD [Escherichia coli 1180]
 gi|323183448|gb|EFZ68845.1| tyrosine recombinase XerD [Escherichia coli 1357]
 gi|323188707|gb|EFZ73992.1| tyrosine recombinase XerD [Escherichia coli RN587/1]
 gi|323377218|gb|ADX49486.1| tyrosine recombinase XerD [Escherichia coli KO11]
 gi|323935874|gb|EGB32173.1| tyrosine recombinase XerD [Escherichia coli E1520]
 gi|323941585|gb|EGB37765.1| tyrosine recombinase XerD [Escherichia coli E482]
 gi|323946620|gb|EGB42643.1| tyrosine recombinase XerD [Escherichia coli H120]
 gi|323960809|gb|EGB56430.1| tyrosine recombinase XerD [Escherichia coli H489]
 gi|323966695|gb|EGB62127.1| tyrosine recombinase XerD [Escherichia coli M863]
 gi|323971668|gb|EGB66897.1| tyrosine recombinase XerD [Escherichia coli TA007]
 gi|323978814|gb|EGB73895.1| tyrosine recombinase XerD [Escherichia coli TW10509]
 gi|324005546|gb|EGB74765.1| tyrosine recombinase XerD [Escherichia coli MS 57-2]
 gi|324011756|gb|EGB80975.1| tyrosine recombinase XerD [Escherichia coli MS 60-1]
 gi|324119935|gb|EGC13814.1| tyrosine recombinase XerD [Escherichia coli E1167]
 gi|325498455|gb|EGC96314.1| site-specific tyrosine recombinase [Escherichia fergusonii ECD227]
 gi|326343096|gb|EGD66864.1| Tyrosine recombinase XerD [Escherichia coli O157:H7 str. 1125]
 gi|327251657|gb|EGE63343.1| tyrosine recombinase XerD [Escherichia coli STEC_7v]
 gi|330908926|gb|EGH37440.1| tyrosine recombinase XerD [Escherichia coli AA86]
 gi|331037055|gb|EGI09279.1| tyrosine recombinase XerD [Escherichia coli H736]
 gi|331042387|gb|EGI14529.1| tyrosine recombinase XerD [Escherichia coli M605]
 gi|331053606|gb|EGI25635.1| tyrosine recombinase XerD [Escherichia coli TA206]
 gi|331058398|gb|EGI30379.1| tyrosine recombinase XerD [Escherichia coli TA143]
 gi|331063297|gb|EGI35210.1| tyrosine recombinase XerD [Escherichia coli TA271]
 gi|331068473|gb|EGI39868.1| tyrosine recombinase XerD [Escherichia coli TA280]
 gi|331073711|gb|EGI45032.1| tyrosine recombinase XerD [Escherichia coli H591]
 gi|331078135|gb|EGI49341.1| tyrosine recombinase XerD [Escherichia coli H299]
 gi|332087665|gb|EGI92792.1| tyrosine recombinase XerD [Shigella dysenteriae 155-74]
 gi|332090893|gb|EGI95984.1| tyrosine recombinase XerD [Shigella boydii 3594-74]
 gi|332102774|gb|EGJ06120.1| tyrosine recombinase xerD [Shigella sp. D9]
 gi|332344790|gb|AEE58124.1| tyrosine recombinase XerD [Escherichia coli UMNK88]
 gi|332999673|gb|EGK19258.1| tyrosine recombinase XerD [Shigella flexneri VA-6]
          Length = 298

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 157/304 (51%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +E+ L++ TL +Y    R   + + +     +T+ T +     +++A +++R
Sbjct: 9   EQFLDALWLEKNLAENTLNAYR---RDLSMMVEWLHHRGLTLATAQS---DDLQALLAER 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K   +    ++ + K    LP+ L+E Q   L+
Sbjct: 63  LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG+K R
Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL       +  Y +   P+ LN ++I + LF   R + +    F   I+      G+
Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292

Query: 316 QTHP 319
           Q HP
Sbjct: 293 QHHP 296


>gi|152979420|ref|YP_001345049.1| site-specific tyrosine recombinase XerD [Actinobacillus
           succinogenes 130Z]
 gi|150841143|gb|ABR75114.1| tyrosine recombinase XerD [Actinobacillus succinogenes 130Z]
          Length = 297

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 150/303 (49%), Gaps = 21/303 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L ++ +E+GLS+ T+QSY  D      +L  ++   I++  +      ++++F+ +R  
Sbjct: 10  FLNDIWLEKGLSENTIQSYRLDLAALCDWLNAHSLSLISLDAV------DLQSFLGQRVE 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                 S  R LS ++   +YL +     +     + + K    LP+ L E+Q      N
Sbjct: 64  AGYKATSTARLLSAMRKLFQYLYRENYRPDDPSATLSSPKLPTRLPKYLTEQQV-----N 118

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL        ++ R+ A+L LLY  GLR++E +SL+  NI   Q  +R+ GKG+K RIV
Sbjct: 119 DLLSVPSTDVPLELRDKAMLELLYATGLRVTELVSLSMDNISLSQGVVRVIGKGNKERIV 178

Query: 201 PLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQ---RYIRQLRRYLGL 256
           P+       + E+        LN      +F   R   +    F    +Y   L    G 
Sbjct: 179 PMGEEAAYWVGEFIRYGRAMLLNGQSSDVVFPSRRALQMTRQTFWHRIKYYAVLADIDGD 238

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            LS   H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++++
Sbjct: 239 SLS--PHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER----LKRLHEK 292

Query: 317 THP 319
            HP
Sbjct: 293 FHP 295


>gi|127511259|ref|YP_001092456.1| tyrosine recombinase XerC [Shewanella loihica PV-4]
 gi|126636554|gb|ABO22197.1| tyrosine recombinase XerC [Shewanella loihica PV-4]
          Length = 297

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 136/258 (52%), Gaps = 18/258 (6%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           ++S  +++A ++K   + +G RS+  +LS +K F  YL +     +   LN+   K+   
Sbjct: 46  EVSDEQLQAVLNKLHRKGLGPRSIALTLSALKQFCHYLLQEGYIKKDPCLNLSAPKQQKP 105

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP+ ++    L  V ++L     +   +  R+ AI+ L Y  GLR++E  +L  ++I   
Sbjct: 106 LPKNMD----LDSVTHLLSIEGDDA--LALRDKAIMELFYSSGLRLAELAALDTRDIASG 159

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
           +  +++ GKG K RIVP+      AI   L+   L P + +      LF   +GK L   
Sbjct: 160 EHQVKVMGKGSKERIVPIGRMALSAIDDWLKVRSLLPCEDD-----ALFVTAKGKRLAHR 214

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             Q  + +  +  GL      H LRHSFATH+L +  DLR++Q +LGH  LSTTQ+YT++
Sbjct: 215 SIQARLNKWGQLQGLNARVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQVYTSL 274

Query: 302 NSKNGGDWMMEIYDQTHP 319
           + ++    + ++YD  HP
Sbjct: 275 DFQH----LAKVYDGAHP 288


>gi|157162354|ref|YP_001459672.1| site-specific tyrosine recombinase XerD [Escherichia coli HS]
 gi|157068034|gb|ABV07289.1| tyrosine recombinase XerD [Escherichia coli HS]
          Length = 298

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 157/304 (51%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +E+ L++ TL +Y    R   + + +     +T+ T +     +++A +++R
Sbjct: 9   EQFLDALWLEKNLAENTLNAYR---RDLSMMVEWLHHRGLTLATAQS---DDLQALLAER 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K   +    ++ + K    LP+ L+E Q   L+
Sbjct: 63  LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG+K R
Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL       +  Y +   P+ LN ++I + LF   R + +    F   I+      G+
Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292

Query: 316 QTHP 319
           Q HP
Sbjct: 293 QHHP 296


>gi|82703659|ref|YP_413225.1| tyrosine recombinase XerC [Nitrosospira multiformis ATCC 25196]
 gi|82411724|gb|ABB75833.1| tyrosine recombinase XerC subunit [Nitrosospira multiformis ATCC
           25196]
          Length = 318

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 150/334 (44%), Gaps = 48/334 (14%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
             +PE    EL      +L  L + R LS LT +SY  D    +        E + I  I
Sbjct: 17  GKMPEKGQAELASA---YLAYLSVTRRLSPLTCESYGRDLDVLMNLSRGIALEHLQIHHI 73

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           R+        F+++        RSL R LS  +    YL +      +    +R  K   
Sbjct: 74  RR--------FLAQLHANGFSGRSLARMLSAWRGLYNYLARHHGYACNPCAGVRAPKSPR 125

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           SLPR L+  +AL L++            +  R+ A+  L Y  GLR++E  +L P+++  
Sbjct: 126 SLPRTLSPDEALKLLE------FDTPDLVALRDKAMFELCYSSGLRLAELANLKPEDLSL 179

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
            +  +R+ GKG+K R VP+     + + E+                 R    KP   G+F
Sbjct: 180 AEGIVRVTGKGNKTRDVPVGSKAMQVVREWIKQ--------------RATLAKPGETGLF 225

Query: 244 -QRYIRQLRRY------------LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             R+ R + R              G+      H LRHSFA+H+L + G+LR++Q +LGH 
Sbjct: 226 LSRHGRNISRRSIDQRLKIQAVKQGISGRIHPHVLRHSFASHVLQSSGNLRAVQEMLGHA 285

Query: 291 RLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
            +STTQ+YT+++ ++    + ++YD THP   +K
Sbjct: 286 SISTTQVYTHLDFQH----LSKVYDATHPRARKK 315


>gi|24114148|ref|NP_708658.1| site-specific tyrosine recombinase XerD [Shigella flexneri 2a str.
           301]
 gi|30064206|ref|NP_838377.1| site-specific tyrosine recombinase XerD [Shigella flexneri 2a str.
           2457T]
 gi|91212272|ref|YP_542258.1| site-specific tyrosine recombinase XerD [Escherichia coli UTI89]
 gi|218559887|ref|YP_002392800.1| site-specific tyrosine recombinase XerD [Escherichia coli S88]
 gi|237706462|ref|ZP_04536943.1| tyrosine recombinase xerD [Escherichia sp. 3_2_53FAA]
 gi|34222799|sp|Q7ZAM0|XERD_SHIFL RecName: Full=Tyrosine recombinase xerD
 gi|24053288|gb|AAN44365.1| site-specific recombinase [Shigella flexneri 2a str. 301]
 gi|30042463|gb|AAP18187.1| site-specific recombinase [Shigella flexneri 2a str. 2457T]
 gi|91073846|gb|ABE08727.1| site-specific recombinase [Escherichia coli UTI89]
 gi|218366656|emb|CAR04410.1| site-specific tyrosine recombinase [Escherichia coli S88]
 gi|226899502|gb|EEH85761.1| tyrosine recombinase xerD [Escherichia sp. 3_2_53FAA]
 gi|294492679|gb|ADE91435.1| tyrosine recombinase XerD [Escherichia coli IHE3034]
 gi|307625533|gb|ADN69837.1| site-specific tyrosine recombinase XerD [Escherichia coli UM146]
 gi|313647934|gb|EFS12380.1| tyrosine recombinase XerD [Shigella flexneri 2a str. 2457T]
 gi|315289443|gb|EFU48838.1| tyrosine recombinase XerD [Escherichia coli MS 110-3]
 gi|323951667|gb|EGB47542.1| tyrosine recombinase XerD [Escherichia coli H252]
 gi|323957385|gb|EGB53107.1| tyrosine recombinase XerD [Escherichia coli H263]
 gi|332752931|gb|EGJ83315.1| tyrosine recombinase XerD [Shigella flexneri 4343-70]
 gi|332753730|gb|EGJ84109.1| tyrosine recombinase XerD [Shigella flexneri K-671]
 gi|332754528|gb|EGJ84894.1| tyrosine recombinase XerD [Shigella flexneri 2747-71]
 gi|332765825|gb|EGJ96038.1| tyrosine recombinase XerD [Shigella flexneri 2930-71]
 gi|333000098|gb|EGK19681.1| tyrosine recombinase XerD [Shigella flexneri K-218]
 gi|333015114|gb|EGK34457.1| tyrosine recombinase XerD [Shigella flexneri K-304]
          Length = 298

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 157/304 (51%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +E+ L++ TL +Y    R   + + +     +T+ T +     +++A +++R
Sbjct: 9   EQFLDALWLEKNLAENTLNAYR---RDLSMMVEWLHHRGLTLATAQS---DDLQALLAER 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K   +    ++ + K    LP+ L+E Q   L+
Sbjct: 63  LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG+K R
Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL       +  Y +   P+ LN ++I + LF   R + +    F   I+      G+
Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292

Query: 316 QTHP 319
           Q HP
Sbjct: 293 QHHP 296


>gi|307942508|ref|ZP_07657856.1| tyrosine recombinase XerD [Roseibium sp. TrichSKD4]
 gi|307774147|gb|EFO33360.1| tyrosine recombinase XerD [Roseibium sp. TrichSKD4]
          Length = 307

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/315 (31%), Positives = 151/315 (47%), Gaps = 33/315 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L+ L  ERG ++ TLQSY  D   F  F A   +    + T R      I A++   
Sbjct: 8   ESFLEMLSAERGAAENTLQSYRRDLDDFAEFTA--PQNPSAVNTDR------ISAYLRDL 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +   + S  R LS +K + K+L    I T+     +   KK  +LP+ L+  +   L+
Sbjct: 60  SLRGFAETSQARRLSALKQYFKFLYADGIRTDDPTRTLSAPKKRQALPKVLSIDEVDKLI 119

Query: 139 DNVLLHTSHE----TKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                  + +     K + A R   +L +LY  GLR+SE ++L       DQ  + + GK
Sbjct: 120 GEAQQAATKKQDSPAKQLRAQRLYTLLEVLYATGLRVSELVALPVTAAQRDQRLIEVTGK 179

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR--YIRQLR 251
           G K R+VPL P+ +KA+ +Y      +L      P      GK    G F R  + R L+
Sbjct: 180 GGKERLVPLSPAAQKAMRDYIRQRA-ELGAYATSPWLFPSHGKS---GHFTRQAFGRDLK 235

Query: 252 RYLGLPLST-------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
               L + T       + H LRH+FA+HLL NG DLR +Q +LGH  +STTQIYT+V  +
Sbjct: 236 ---DLAVDTKIDTDKVSPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDE 292

Query: 305 NGGDWMMEIYDQTHP 319
                + ++ +  HP
Sbjct: 293 R----LTQLVESAHP 303


>gi|255282461|ref|ZP_05347016.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469]
 gi|255267045|gb|EET60250.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469]
          Length = 304

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 148/298 (49%), Gaps = 20/298 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           LE E+  S  T+ SY+ D ++   +L+    EK+     + ++ T + ++I +   +   
Sbjct: 22  LEEEKNASNSTVMSYQRDLKKLFHYLSGKGVEKV-----QDVTATSLNSYILQMEKEGFS 76

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S+ R+++ I++F  +L K K  TE    N++        P  L  ++ + L++   L 
Sbjct: 77  TSSVSRTIASIRAFFHFLVKTKAVTEDPSDNLKAPHVEKKTPEILTLEETVQLLNQPELD 136

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALS--LTPQNIMDDQSTLRIQGKGDKIRIVPL 202
           ++   K I  R+ A+L LLY  G+R+SE +S  LT  N+       R     DK R++P 
Sbjct: 137 SA---KGI--RDKAMLELLYATGMRVSELISMKLTDVNMAMGYVLCR---DSDKERVIPF 188

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
                KA+  Y +     L    +   LF    GK ++   F + I+      G+    T
Sbjct: 189 GTEAEKALKRYLEESRSVLLKGKESEFLFVNCSGKSMSRQGFWKIIKFYSAQAGITKDIT 248

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            HTLRHSF  HL+ NG DLR++Q ++GH  +STTQIY ++N +     + EIY + HP
Sbjct: 249 PHTLRHSFGAHLVQNGADLRAVQEMMGHSDISTTQIYMDMNVRR----VREIYAKAHP 302


>gi|184156584|ref|YP_001844923.1| site-specific recombinase XerD [Acinetobacter baumannii ACICU]
 gi|183208178|gb|ACC55576.1| Site-specific recombinase XerD [Acinetobacter baumannii ACICU]
 gi|322506471|gb|ADX01925.1| xerD [Acinetobacter baumannii 1656-2]
          Length = 306

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/240 (33%), Positives = 130/240 (54%), Gaps = 11/240 (4%)

Query: 82  KIGD--RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           K+G   RS+ R LS ++ F K+L+++K+ +++ +    + K   +LP+ L E+    L+ 
Sbjct: 74  KVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLCEEDVEALIQ 133

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              + T+     +  R+ A+  +LY CGLR+SE L+L  + I   Q  LRI GKG+K R+
Sbjct: 134 APDITTA-----LGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERL 188

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPL       +  Y +     L  +    LF    G  ++   F   I++      +   
Sbjct: 189 VPLGQYACDWVERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAE 248

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        M +++++ HP
Sbjct: 249 LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR----MQQLHEKHHP 304


>gi|56415803|ref|YP_152878.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197364733|ref|YP_002144370.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56130060|gb|AAV79566.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197096210|emb|CAR61807.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 300

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 149/298 (50%), Gaps = 17/298 (5%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L++ER LS +TL +Y+   RQ    +A   E    +++ +Q     +R+F  + R +
Sbjct: 14  LRYLDVERQLSPITLLNYQ---RQLDAIIALAGE--TGLKSWQQCDAAIVRSFAVRSRRK 68

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++      L+D  
Sbjct: 69  GLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDID 128

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           L         +  R+ A+L ++YG GLR+SE + L  +++  D   + + GKG K R +P
Sbjct: 129 L------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLP 182

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           +  +    I  + DL    L  + +  LF    GK ++    Q+   +     GL     
Sbjct: 183 IGRNAVTWIEHWLDLR--GLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVH 240

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  +YD  HP
Sbjct: 241 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 294


>gi|315092744|gb|EFT64720.1| tyrosine recombinase XerD [Propionibacterium acnes HL060PA1]
          Length = 306

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/311 (30%), Positives = 156/311 (50%), Gaps = 27/311 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L++L +ERGLS  T+Q+Y  D  ++  +L         I ++ +++  ++  F  +R
Sbjct: 10  EDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLGSRG-----IGSLAEVTRVDVEEF--RR 62

Query: 79  RTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               IG    S+ R +  +++  ++              M    +S  LP+AL   Q  +
Sbjct: 63  HLDHIGLAPASVTRCVVAVRNLHRFAVGSGQVQADVTAGMSPGTRSRRLPKALTMDQVES 122

Query: 137 LVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNI---MDDQS-TLRIQ 191
           L+       + +T  ++  R+ A+L LLYG G R+SE  +L   +I   +DD    LR+ 
Sbjct: 123 LL------AAPDTSTVEGLRDVALLELLYGTGARVSEVCALDVDDIRRVLDDPDLGLRLI 176

Query: 192 GKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           GKGDK RIVPL     KA+  +       +    N +  L    RG+ L+       IR+
Sbjct: 177 GKGDKERIVPLGSYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRR 236

Query: 250 LRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                GL +   + H+LRHS+ATHLL  G D+R +Q +LGH  ++TTQIYT V +    D
Sbjct: 237 AGEAAGLDVEHLSPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVTA----D 292

Query: 309 WMMEIYDQTHP 319
            + E+Y  +HP
Sbjct: 293 HLREVYRSSHP 303


>gi|323154775|gb|EFZ40973.1| tyrosine recombinase XerD [Escherichia coli EPECa14]
          Length = 298

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 157/304 (51%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +E+ L++ TL +Y    R   + + +     +T+ T +     +++A +++R
Sbjct: 9   EQFLDALWLEKNLAENTLNAYR---RDLSMMVEWLYHRGLTLATAQS---DDLQALLAER 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K   +    ++ + K    LP+ L+E Q   L+
Sbjct: 63  LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG+K R
Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL       +  Y +   P+ LN ++I + LF   R + +    F   I+      G+
Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292

Query: 316 QTHP 319
           Q HP
Sbjct: 293 QHHP 296


>gi|323495869|ref|ZP_08100937.1| site-specific tyrosine recombinase XerD [Vibrio sinaloensis DSM
           21326]
 gi|323319085|gb|EGA72028.1| site-specific tyrosine recombinase XerD [Vibrio sinaloensis DSM
           21326]
          Length = 302

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 154/305 (50%), Gaps = 21/305 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + +ERGLS+ TL SY  D  + L +++ +         +  +S + ++ + +  
Sbjct: 13  EQFLDAMWMERGLSENTLASYRNDLMKLLQWMSSHNYR------LDFISLSGLQEYQTWL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYL--KKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             +     S  R LS I+   +YL  +KR+    S +L    L K   LP+ L+E+Q   
Sbjct: 67  VDEGYKQTSRARMLSAIRRLFQYLHREKRRADDPSALLVSPKLPKR--LPKDLSEQQV-- 122

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
              + LL        ++ R+ A+L LLY  GLR++E +SLT +NI   Q  +R+ GKG K
Sbjct: 123 ---DALLDAPDPNDPMELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGK 179

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R+VP+  +    I  +      +L   N    +F   R + +    F   I+      G
Sbjct: 180 ERLVPMGENAVDWIETFLQQGRSELLGENTSDVVFPSKRARQMTRQTFWHRIKHYAVIAG 239

Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           +     + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +++
Sbjct: 240 IDADKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLH 295

Query: 315 DQTHP 319
            + HP
Sbjct: 296 SEHHP 300


>gi|194434030|ref|ZP_03066300.1| tyrosine recombinase XerC [Shigella dysenteriae 1012]
 gi|194417688|gb|EDX33787.1| tyrosine recombinase XerC [Shigella dysenteriae 1012]
 gi|320178102|gb|EFW53082.1| Tyrosine recombinase XerC [Shigella boydii ATCC 9905]
 gi|332084672|gb|EGI89860.1| tyrosine recombinase XerC [Shigella boydii 5216-82]
 gi|332084963|gb|EGI90145.1| tyrosine recombinase XerC [Shigella dysenteriae 155-74]
          Length = 298

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 153/307 (49%), Gaps = 17/307 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+   RQ    + F +E    ++  +Q   T +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--GLKNWQQCDVTMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHP 319
           +YD  HP
Sbjct: 286 VYDAAHP 292


>gi|333000719|gb|EGK20294.1| tyrosine recombinase XerD [Shigella flexneri K-272]
 gi|333015225|gb|EGK34567.1| tyrosine recombinase XerD [Shigella flexneri K-227]
          Length = 298

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 157/304 (51%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +E+ L++ TL +Y    R   + + +     +T+ T +     +++A +++R
Sbjct: 9   EQFLDALWLEKNLAENTLNAYR---RDLSMMVEWLHHRGLTLATAQS---DDLQALLAER 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K   +    ++ + K    LP+ L+E Q   L+
Sbjct: 63  LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG+K R
Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTISDISLRQGVVRVIGKGNKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL       +  Y +   P+ LN ++I + LF   R + +    F   I+      G+
Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292

Query: 316 QTHP 319
           Q HP
Sbjct: 293 QHHP 296


>gi|331082291|ref|ZP_08331417.1| hypothetical protein HMPREF0992_00341 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400777|gb|EGG80378.1| hypothetical protein HMPREF0992_00341 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 294

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 149/306 (48%), Gaps = 20/306 (6%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E Q ++++L   RG S+ T  SYE D ++   FL     ++  I    Q+S   + ++I 
Sbjct: 4   EIQEFIEHLHNTRGTSRNTEVSYERDLKKLEQFL-----KQEGILEWHQVSAVLLNSYIM 58

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               +     S+ RS++ I++F +YL +R+   E+    ++  K     P  L       
Sbjct: 59  YLERKNFAASSISRSVASIRAFFQYLCQRECWRENPAEGLKAPKIEKKAPGILT------ 112

Query: 137 LVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
            VD V  LL    E      R+ A+L LLY  G+R+SE + LT +++      L    + 
Sbjct: 113 -VDEVDLLLSQPKENTAKGVRDRAMLELLYATGIRVSELIHLTLRDVNLKLGYLTC-SQS 170

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           ++ R++P   + + A+  Y      +L   N    LF    GK ++   F + ++     
Sbjct: 171 ERERVIPFGATAKTAVEAYMAWARAELLGENSSEWLFVNCSGKSMSRQGFWKILKGYAVS 230

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    T HTLRHSFA HL+ NG DL+S+Q ++GH  +STTQIY N+N       + ++
Sbjct: 231 AGIQQDITPHTLRHSFAAHLVQNGADLKSVQEMMGHSDISTTQIYMNMNVNK----IRDV 286

Query: 314 YDQTHP 319
           Y + HP
Sbjct: 287 YMKAHP 292


>gi|241760809|ref|ZP_04758900.1| integrase/recombinase [Neisseria flavescens SK114]
 gi|241318706|gb|EER55258.1| integrase/recombinase [Neisseria flavescens SK114]
          Length = 298

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 146/298 (48%), Gaps = 19/298 (6%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +++G S+ T+ +Y  D  + +  L    E  +  +        +  A + K   + + + 
Sbjct: 19  LQQGKSEHTVSAYRRDLSELMRLLPDNLENGLPTRR-------DFVAVLKKLSQKGLSES 71

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           SL R LS  + +  +L + ++       NM+  +    LP+AL ++     ++++L H  
Sbjct: 72  SLVRKLSVWRQYCSWLVQIEVMESDPTFNMKAPRLPERLPKALPQEP----LNHILDHAP 127

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
            + + +D R+ A+  L+YG GLR+SE   L    I+ D+  + ++GKG K R VPL   V
Sbjct: 128 VDDE-LDVRDKAMFELMYGSGLRLSEIQGLNLDGIVLDEGWVSVKGKGGKQRQVPL---V 183

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            K+I    D     +    +  LF    G  L     Q+ ++     +G     + H +R
Sbjct: 184 AKSIAALRDYLAVRIAKEGEQALFTNKNGGRLGQRQIQKRLQAWAVRVGSASHISPHMMR 243

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           HS+ATHLL   GD+R++Q +LGH  LS TQ+YT ++     D +  +YD+ HP   +K
Sbjct: 244 HSYATHLLQASGDIRAVQELLGHSNLSATQVYTKLDF----DHLARVYDEAHPRAKRK 297


>gi|332829855|gb|EGK02497.1| tyrosine recombinase XerD [Dysgonomonas gadei ATCC BAA-286]
          Length = 299

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 150/290 (51%), Gaps = 15/290 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++K+ +N+L    +E+ LS  ++ +Y  D  +   FL     E +  +   ++   +++ 
Sbjct: 7   IIKKYRNYLL---LEKSLSPNSIDAYMTDLDKLSGFLE---NEGLKAE---EMKLDDLQQ 57

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           FI++     I  RS+ R +SGIKSF  +L             +   K    LP  L+  +
Sbjct: 58  FIAQLYDLGINARSVARIISGIKSFYNFLVLDGYMQADPTELLETPKIGLKLPTVLSLDE 117

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+  + L T         RN AIL +LY CGLRISE  +L   ++  D+  ++++GK
Sbjct: 118 IEKLMSVIDLSTKE-----GQRNRAILEVLYSCGLRISELTNLKFSDLFFDEGFIKVEGK 172

Query: 194 GDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K R+VP+  +    I +Y Y     D+    +  LF   RG  ++  +   +I+Q   
Sbjct: 173 GSKQRLVPISHTAINEIEKYLYYRREMDIKKGSEDILFLSKRGTAISRIMVFHFIKQYAD 232

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             G+  + + HT RHSFATHLL  G ++R+IQ +LGH +++TT+IYT+++
Sbjct: 233 QAGIKKTISPHTFRHSFATHLLEGGANIRAIQLMLGHEKITTTEIYTHMD 282


>gi|1916335|gb|AAC45774.1| site-specific recombinase [Salmonella enterica subsp. enterica
           serovar Typhimurium]
          Length = 298

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 155/304 (50%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER L++ TL +Y  D    + +L    +   T Q        +++  +++R
Sbjct: 9   EQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQA------DDLQTLLAER 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   +  R LS ++ F ++L + K   +     + + K    LP+ L+E Q   L+
Sbjct: 63  VEGGYKATTSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG+K R
Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL       +  Y +   P+ LN ++I + LF   R + +    F   I+      G+
Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + ++++
Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHE 292

Query: 316 QTHP 319
           Q HP
Sbjct: 293 QHHP 296


>gi|326791364|ref|YP_004309185.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326542128|gb|ADZ83987.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 296

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 152/287 (52%), Gaps = 16/287 (5%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T+QSYE D R F      Y EE+  I+ I+ L+  +I+ ++   + ++    ++ R+L+ 
Sbjct: 22  TVQSYERDLRYF----ERYVEEQGKIE-IQSLTDQQIKVYLEHMKDEEKSTATISRTLAS 76

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           I++F +YL K ++  E+    +   K     PR L+++Q  +L++        +TK I  
Sbjct: 77  IRAFCQYLVKEQVLNENPARLIALPKIEKKAPRILSQEQISSLLEQP---NKKDTKGI-- 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A+L LLY  G+R+SE +SL   +I   Q  + I     K R +P+  S   A+  Y 
Sbjct: 132 RDRAMLELLYATGIRVSELISLKTTDINLQQGYI-ICRDAQKERTIPIGKSAISALNMYL 190

Query: 215 DLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                 L  + N +  LF    G P+    F + ++       +    T H LRHSFA H
Sbjct: 191 GEVRHILIRSANDK-TLFVNCNGYPMTRQGFWKILKTYANAAHIQGEITPHMLRHSFAAH 249

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           L+ NG +L+S+Q +LGH  +STTQ+Y ++N +   + +M++Y++THP
Sbjct: 250 LVQNGANLKSVQQMLGHSDISTTQVYMHLNKET--EELMDVYNKTHP 294


>gi|114705350|ref|ZP_01438258.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506]
 gi|114540135|gb|EAU43255.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506]
          Length = 323

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 147/291 (50%), Gaps = 16/291 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ + +ERG +  TLQ+Y  D      FL  +         + +     IRA+++  
Sbjct: 20  EAFLEMMAVERGAADNTLQAYARDLDAARSFLKPHG-------GLMRADSDAIRAYLTSL 72

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + + + +  R LS ++   ++L      T+     +   +K   LP+ ++E +   L+
Sbjct: 73  SAEGLSESTRSRRLSALRQLYRFLYTEGRRTDDPTSPIEGARKKRPLPKVMSEDEVDRLL 132

Query: 139 DNVLLHTSHETKWIDARNSAI-----LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           D     T+       +R  AI     + LLY  GLR+SE +SL    +++   T+ + GK
Sbjct: 133 DLAEAETNDAELSPSSRVRAIRLRVLVELLYATGLRVSELVSLPKSMLVNRARTITVLGK 192

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRG-IRGKPLNPGVFQRYIRQLR 251
           G+K R+VP+  + R++ L+ Y        LN + P LF        L+  VF R ++ L 
Sbjct: 193 GNKERLVPIGAAARES-LDAYGQALKAAGLNNEGPWLFPADSESGHLSRQVFARELKGLA 251

Query: 252 RYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              G+  +  + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V
Sbjct: 252 ARTGISAAKISPHVLRHAFASHLLQNGADLRAVQELLGHADISTTQIYTHV 302


>gi|258620859|ref|ZP_05715893.1| Tyrosine recombinase xerD [Vibrio mimicus VM573]
 gi|258586247|gb|EEW10962.1| Tyrosine recombinase xerD [Vibrio mimicus VM573]
          Length = 302

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 155/304 (50%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + +ERGL++ T+ SY  D  + L ++A +  +      +  +S++ ++ + +  
Sbjct: 13  EQFLDAMWLERGLAENTVASYRNDLSKLLEWMAQHQYQ------LDFISFSGLQEYQNWL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R LS I+   +YL + K+  +     + + K    LP+ L E Q     
Sbjct: 67  SEQNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLISPKLPTRLPKDLTEAQV---- 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL        I+ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG K R
Sbjct: 123 -EALLSAPDPQTPIELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVIGKGGKER 181

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VP+  +  + I E +      L L  Q    +F   RG+ +    F   I+       +
Sbjct: 182 LVPMGENAIEWI-ETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAEI 240

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            +   + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + ++++
Sbjct: 241 DVELLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHN 296

Query: 316 QTHP 319
           + HP
Sbjct: 297 EHHP 300


>gi|52424801|ref|YP_087938.1| site-specific tyrosine recombinase XerD [Mannheimia
           succiniciproducens MBEL55E]
 gi|52306853|gb|AAU37353.1| XerC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 298

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 153/301 (50%), Gaps = 17/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L + +GLS  T+QSY  D    L  L+ + + +   +++  L  ++++AF+ +R  
Sbjct: 11  FLNELWLGKGLSDNTVQSYRLD----LTALSQWLQGQG--KSLETLDSSDLQAFLGERVD 64

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     S  R LS ++   +YL +    T+     + + K    LP+ L E+Q       
Sbjct: 65  QGYKATSTARMLSAMRKLFQYLYQESYRTDDPSAILSSPKLPGRLPKYLTEQQV-----G 119

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL+       ++ R+ A+L LLY  GLR++E ++L+  NI  +Q  +R+ GKG+K RIV
Sbjct: 120 DLLNAPSTDIPLELRDKAMLELLYATGLRVTELVTLSTDNINLEQGVVRVIGKGNKERIV 179

Query: 201 PLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL- 258
           P+       + ++     P  LN      +F   R   +    F   I+       +   
Sbjct: 180 PMGEEASYWVGQFILYGRPMLLNGQSSDVIFPSKRALQMTRQTFWHRIKHYAILADIDTD 239

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           S + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++++ H
Sbjct: 240 SLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER----LKRLHEKYH 295

Query: 319 P 319
           P
Sbjct: 296 P 296


>gi|296140077|ref|YP_003647320.1| tyrosine recombinase XerD [Tsukamurella paurometabola DSM 20162]
 gi|296028211|gb|ADG78981.1| tyrosine recombinase XerD [Tsukamurella paurometabola DSM 20162]
          Length = 324

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 143/309 (46%), Gaps = 18/309 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L +L +ERG +  TL SY  D  ++  +L      ++ I  +  ++ T++  F+   
Sbjct: 22  RAYLDHLTVERGAAANTLSSYRRDLDRYREYLV-----ELGIDDLASVTSTQVSGFLVAL 76

Query: 79  RTQKIG-----DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           R    G       S  RSL  ++   ++     +T       +R    +  LP+AL+   
Sbjct: 77  REGSDGRPPLAASSAARSLIAVRGLHRFAAAEGLTASDVAREVRPPAPAKRLPKALSIDT 136

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
            + L++        +T     R+ A+L LLY CG RISE  +L   +I     ++ + GK
Sbjct: 137 VIALLEAAGGDGESDTPS-RLRDRALLELLYSCGARISEVTALDVDDIDVQSRSVVLMGK 195

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R+VP+      AI  Y       L       LF  +RG  L+     + +      
Sbjct: 196 GGKQRVVPIGRPALAAIEAYLVRGRPSLVKKSNPALFLNVRGGRLSRQSAWQVLATAAER 255

Query: 254 LGL---PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            G+    +  + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQ+YT V  +     +
Sbjct: 256 AGIDTDAVHVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTVQ----AL 311

Query: 311 MEIYDQTHP 319
            E+Y Q HP
Sbjct: 312 REVYAQAHP 320


>gi|261379271|ref|ZP_05983844.1| tyrosine recombinase XerC [Neisseria subflava NJ9703]
 gi|284797703|gb|EFC53050.1| tyrosine recombinase XerC [Neisseria subflava NJ9703]
          Length = 298

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 149/300 (49%), Gaps = 25/300 (8%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS--KRRTQK-IG 84
           ++G S+ T+ +Y  D  + +  L    E  +  +          R F++  K+ +QK + 
Sbjct: 20  QQGKSQHTVSAYRRDLSELMRLLPDNLENGLPTR----------RDFVAVLKKLSQKGLS 69

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           + SL R LS  + +  +L + ++       NM+  +    LP+AL ++     ++++L H
Sbjct: 70  ESSLARKLSAWRQYCSWLVQIEVMESDPTFNMKAPRLPERLPKALLQEP----LNHILDH 125

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
              + + +D R+ A+  L+YG GLR+SE   L   +I+ D+  + + GKG K R VPL  
Sbjct: 126 APVDDE-LDVRDKAMFELMYGSGLRLSEIQGLNLNSIVLDEGWVSVNGKGGKQRQVPL-- 182

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            V K+I    D     +    +  LF    G  L     Q+ ++     +G     + H 
Sbjct: 183 -VGKSIAALRDYLAVRIAKEGEQALFTNKNGGRLGQRQIQKRLQAWAVRVGSASHISPHM 241

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           +RHS+ATHLL   GD+R++Q +LGH  LS TQ+YT ++     D +  +YD+ HP   +K
Sbjct: 242 MRHSYATHLLQASGDIRAVQELLGHSNLSATQVYTKLDF----DHLARVYDEAHPRAKRK 297


>gi|269120433|ref|YP_003308610.1| integrase family protein [Sebaldella termitidis ATCC 33386]
 gi|268614311|gb|ACZ08679.1| integrase family protein [Sebaldella termitidis ATCC 33386]
          Length = 307

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 150/306 (49%), Gaps = 13/306 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L++  + +L   E+  G S  T++ Y  D  QF+ +++   E    I    ++    +R+
Sbjct: 10  LIEPLEKFLHFQEVILGKSYNTIRGYRKDITQFIDYISGNEE----IFDYNKVEVFTVRS 65

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           FI+     ++G RS+ R +S +++F  YLK++ I   + ++ +   K    LP  L  K 
Sbjct: 66  FIAYSNNNEVGKRSINRKISALRTFFAYLKEQNIVEANKLIYVNMPKFEKELPTVLT-KD 124

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
            +  + NV+      +K    R+  I+  LY  GLR SE +SL+   I  ++  +R+ GK
Sbjct: 125 DINKLRNVI----DISKVTGIRDRLIIEFLYSSGLRSSELVSLSELMINLEEREVRVLGK 180

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R+     + RK   +Y      +        +F   RG+ +     +R I      
Sbjct: 181 GNKERVTFFSENARKWYEKYISAKRNEYKNYTPNIVFVNSRGERITTRSLRRLIADYAEK 240

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    T H  RHSFAT LL+N  D+R +Q +LGH  +STTQ+YT+V+       + EI
Sbjct: 241 AGINKEVTPHVFRHSFATTLLNNKVDIRYLQELLGHSSISTTQVYTHVSKA----LLREI 296

Query: 314 YDQTHP 319
           Y + HP
Sbjct: 297 YIKAHP 302


>gi|163839570|ref|YP_001623975.1| XerD/RipX family integrase/recombinase [Renibacterium salmoninarum
           ATCC 33209]
 gi|162953046|gb|ABY22561.1| integrase/recombinase (XerD/RipX family) [Renibacterium
           salmoninarum ATCC 33209]
          Length = 312

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 147/317 (46%), Gaps = 30/317 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +LQ+L +ERGL+  TL +Y  D  ++  FLA        ++T  Q+S   +  F    
Sbjct: 6   REYLQHLAVERGLAANTLAAYRRDLTRYTNFLA-----SQGVRTPEQISRKNVTDFAQAL 60

Query: 79  RT-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            T       +G RS  R +  ++   K+      TT      +        LP+A++  +
Sbjct: 61  STGSDGATALGVRSAARCIVALRGMHKFWALEATTTADPASEVHPPMAGRRLPKAISVAE 120

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM------DDQS- 186
               V  +L  +  +T     R+ A+L  LY  G RISEA+ L   +++      +DQS 
Sbjct: 121 ----VTKILEASGSDTA-TGLRDRALLEFLYSTGARISEAIGLDVDDVVGANSVGNDQSG 175

Query: 187 --TLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLP-LFRGIRGKPLNPGV 242
              +R+ GKG K RIVPL     +AI  Y     P         P LF  +RG  L+   
Sbjct: 176 PAVVRLFGKGSKERIVPLGSYGARAIEAYLVRGRPLLSATGKATPALFLNVRGGRLSRQS 235

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               ++       +    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQ+YT V 
Sbjct: 236 AWAILKTAAEKAEISKVVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVT 295

Query: 303 SKNGGDWMMEIYDQTHP 319
           +    D + E+Y   HP
Sbjct: 296 A----DTLREVYASAHP 308


>gi|114778675|ref|ZP_01453487.1| tyrosine recombinase XerD [Mariprofundus ferrooxydans PV-1]
 gi|114551037|gb|EAU53599.1| tyrosine recombinase XerD [Mariprofundus ferrooxydans PV-1]
          Length = 299

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 149/298 (50%), Gaps = 18/298 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           LQ L + RG S  T  SY  D    L   +++ +   ++    Q     I  +++K    
Sbjct: 16  LQRLAMLRGWSPQTTSSYRSD---LLHADSYFVDHHTSLM---QADGKAILDYLAKLGRD 69

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +   +++R  S + ++  +L+ + +  +    ++  L+KS  LP+ ++E      V+ +
Sbjct: 70  GMKPTTIQRRRSALSTWFTWLQDQNLREDHPARHLPKLRKSRPLPKMMSEHD----VERL 125

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           L     E   +  R+  +L LLY  G+R+SE +SLT   +  D   LR+ GKGDK R++P
Sbjct: 126 LAAPETEDP-VGLRDRCMLELLYATGVRVSELVSLTRGQVEMDAGLLRVIGKGDKERLIP 184

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
                 + + ++  L P          LF G  G  +    F   I++     G+    +
Sbjct: 185 FGEEAGQWLQQWLLLRPAKPASPY---LFAGRGGHAMTRQNFWLRIKRYATMAGIMPLPS 241

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            HTLRH+FATHLL++G DLR++Q +LGH  ++TT+IYT+V+       M ++ + +HP
Sbjct: 242 PHTLRHAFATHLLNHGADLRAVQMLLGHAHVTTTEIYTHVSRAR----MHDLVNHSHP 295


>gi|294648993|ref|ZP_06726441.1| site-specific tyrosine recombinase XerD [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292825128|gb|EFF83883.1| site-specific tyrosine recombinase XerD [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 333

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 127/234 (54%), Gaps = 9/234 (3%)

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           RS+ R LS ++ F K+L+++K+  ++ + +  + K   +LP+ L+E+    L++   + T
Sbjct: 107 RSIARCLSALRQFYKFLREQKLREDNPVASHHSPKIGRALPKDLSEQDVEALINAPDIST 166

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           +     +  R+ A+  +LY CGLR+SE L+L  + I   Q  +RI GKG+K R+VPL   
Sbjct: 167 T-----LGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGFVRITGKGNKERLVPLGQY 221

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
               I +Y       L  +    LF    G  ++   F   I++      +    + HTL
Sbjct: 222 ACDWIEKYLAESRPQLYKSNTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAELSPHTL 281

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           RH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        M  ++ Q HP
Sbjct: 282 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQHR----MQALHHQYHP 331


>gi|170729959|ref|YP_001775392.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa M12]
 gi|167964752|gb|ACA11762.1| integrase/recombinase [Xylella fastidiosa M12]
          Length = 324

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 152/307 (49%), Gaps = 24/307 (7%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L  L I+ GLS+ TL SY  D    L  LA +   +     +  L+   +  +++ R  Q
Sbjct: 31  LDALWIKHGLSRHTLNSYRRD----LEGLARWNNGRAG--PLATLTPPALLDYLTWRTQQ 84

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                S  R LS +++F  Y  +     ++    + +    + LP+AL E Q    ++ +
Sbjct: 85  HYSPLSNARLLSVLRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQ----IEAL 140

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           L   S ET     RN A+L L+Y  GLR+SE ++L    +   Q  LRI GKG K R+VP
Sbjct: 141 LAAPSIETP-EGLRNRAMLELMYAAGLRVSELITLPVAMLNRRQGVLRITGKGGKERLVP 199

Query: 202 LLPSVRKAILEYYDLC--------PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           L    +  +  Y +          P   + +  +PLF     K L+   F R+I+     
Sbjct: 200 LGEESQHWLQRYLEQARPSLAADKPIPADSDGDVPLFINTNLKRLSRQQFWRWIKHYAAL 259

Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+ P   + H LRHSFATHLL++G DLR++Q +LGH  +STTQIYT +  ++    + +
Sbjct: 260 AGIAPNKVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTLIARQH----LQQ 315

Query: 313 IYDQTHP 319
           ++ Q HP
Sbjct: 316 LHAQHHP 322


>gi|54310573|ref|YP_131593.1| site-specific tyrosine recombinase XerC [Photobacterium profundum
           SS9]
 gi|46915016|emb|CAG21791.1| putative integrase/recombinase XerC [Photobacterium profundum SS9]
          Length = 313

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 157/306 (51%), Gaps = 16/306 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L K  Q + + +  ER LS  T Q+Y+   RQ           ++T  T+    +  +R 
Sbjct: 17  LEKPLQFFYEYIRSERELSLHTQQNYK---RQLSTIAEQLVSFEVTDWTMVDAGW--VRQ 71

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             SK     +   S+   LS ++SF  +L ++ I   +    +   +K+  LP+ L+  +
Sbjct: 72  IASKGMRDGLKASSISMRLSALRSFFDFLVQKDILKANPAKGVAAPRKARPLPKNLDVDE 131

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
               +D +L  + +E   +  R+ A++ L+YG GLR++E +SL  ++I   +  +R+ GK
Sbjct: 132 ----MDQLL--SVNEDDPLSIRDRAMMELMYGAGLRLAELVSLNVRDISLSKGDIRVIGK 185

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GDK RIVP     R+ +  +  +    L    ++ LF    G  ++    Q+ + +  + 
Sbjct: 186 GDKERIVPFAGLAREWVANWLKVRGA-LASGDEVGLFVSKLGTRISTRNVQKRMAEWGQK 244

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +      H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++    + ++
Sbjct: 245 QAVSSHINPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LAKV 300

Query: 314 YDQTHP 319
           YD+ HP
Sbjct: 301 YDEAHP 306


>gi|116625461|ref|YP_827617.1| tyrosine recombinase XerD subunit [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116228623|gb|ABJ87332.1| tyrosine recombinase XerD subunit [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 302

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 140/292 (47%), Gaps = 15/292 (5%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           S  L  +   +L    IE+GLS  ++ +Y  D  +F+ F     E              E
Sbjct: 9   SAVLCGQTAAFLNFCRIEKGLSPNSISAYSADLARFVQFTGDVQEPP---------GVPE 59

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           IR +I       + +RS+ R L+ +++F  +L +          ++R  ++  ++P+ LN
Sbjct: 60  IRQYIDHLYQTGLSNRSVGRHLTTLRNFYGFLLREGKVATDPTEHLRTPRQWQTIPKYLN 119

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            ++   ++    L      K +  R+ A++ +LY  GLR+SE   L   ++  +   LR 
Sbjct: 120 LEEIERIIQAPDL-----AKPLGLRDRAMMEVLYASGLRVSELCKLGIGDLDLEYQVLRT 174

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
            GKG+K R+VP+  +   A+  Y +   P  L       LF   RG  +    F + +  
Sbjct: 175 TGKGNKQRLVPVGKAAVLAVRAYLESGRPGLLKGRASRYLFVTARGGCMTRQGFWKLLAA 234

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             R  G+    T H LRHSFATHLL  G DLRS+Q +LGH  +STTQIYT+V
Sbjct: 235 YGRKAGIFHGLTPHVLRHSFATHLLEGGADLRSVQVMLGHADISTTQIYTHV 286


>gi|168242831|ref|ZP_02667763.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194449828|ref|YP_002047028.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194408132|gb|ACF68351.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205338181|gb|EDZ24945.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 298

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 154/304 (50%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER L++ TL +Y  D    + +L    +   T Q        +++  +++R
Sbjct: 9   EQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQA------DDLQTLLAER 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++ F ++L + K   +     + + K    LP+ L+E Q   L+
Sbjct: 63  VEGGYKATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG+K R
Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGMVRVIGKGNKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL       +  Y +   P+ LN ++I + LF   R + +    F   I+      G+
Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292

Query: 316 QTHP 319
           Q HP
Sbjct: 293 QHHP 296


>gi|254463512|ref|ZP_05076928.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2083]
 gi|206680101|gb|EDZ44588.1| tyrosine recombinase XerD [Rhodobacteraceae bacterium HTCC2083]
          Length = 314

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 153/316 (48%), Gaps = 24/316 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L     E G +  T  +Y  D + F  +L   +  K++ +     +   + A++    
Sbjct: 13  TFLDAQAAELGAATNTQLAYARDLKDFAEYL---SGRKLSFENA---ARDHVEAYLIFCD 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q +   +  R LS IK   ++  +    +++  + +    K   LP+ LN  +   L+ 
Sbjct: 67  AQGLAKSTRARRLSAIKQLYRFGFEEGWRSDNPAIQIAGPGKDKRLPKTLNMGEVDGLLA 126

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              +     T  +  RN+ ++ LLY  G+R+SE +SL       + S L I+GKGDK R+
Sbjct: 127 AARVVGRSPTDRL--RNTCLMELLYATGMRVSELVSLPISAARGNPSMLLIRGKGDKERM 184

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-------LF--RGIRGKPLNPGVFQRYIRQL 250
           VPL P  R A+ E+ +    DL    +L        LF  RG  G  L    F   I++L
Sbjct: 185 VPLSPPARDALTEWLETLD-DLQEAGRLKGKAVSRFLFPSRGKEGH-LTRHRFYILIKEL 242

Query: 251 RRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             + G+P +  T HTLRH+FATHLL NG DLRSIQ++LGH  ++TT+IYT+V        
Sbjct: 243 SVHAGVPPAKVTPHTLRHAFATHLLENGADLRSIQTLLGHADVATTEIYTHVLEAR---- 298

Query: 310 MMEIYDQTHPSITQKD 325
           + E+  Q HP     D
Sbjct: 299 LQELVLQHHPLANDDD 314


>gi|167630281|ref|YP_001680780.1| tyrosine recombinase xerc, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167593021|gb|ABZ84769.1| tyrosine recombinase xerc, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 340

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 145/302 (48%), Gaps = 13/302 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L  E   +  T  +Y  D  Q +  L    +    +  + ++S   +R  I++   
Sbjct: 47  YLRYLAAEGNHAIHTRSAYASDLAQLIELL---EQTDSGVPRLPEVSADRLRLCITRLYA 103

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +   SL R L+  + F +YL +    T   +  +++ K    LP+ L+E +   L+  
Sbjct: 104 VGMERSSLARKLAAWRGFFRYLVREGQLTSHPMKRLKSPKLGRPLPKTLSESEVSCLLSA 163

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                    + +  RN A++ L Y  GLR++E   L   ++      +R+ GKG K RIV
Sbjct: 164 A---ERRGDEPLALRNLAMVELFYASGLRVAELCGLDLGSVDAGLGYVRVLGKGGKERIV 220

Query: 201 PLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           P+     +AI  Y       L      +   LF   RG+ L+    Q  + ++     L 
Sbjct: 221 PVGEQALEAISRYLKQGRPALARRQREVSPALFLNHRGRRLSVRGAQDILSRIADGAALE 280

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + HTLRH+FATHLL  G DLRS+Q +LGH +LSTTQIYT+V+++     + EIY +T
Sbjct: 281 RGISPHTLRHTFATHLLDGGADLRSVQEMLGHAKLSTTQIYTHVSAER----LKEIYHKT 336

Query: 318 HP 319
           HP
Sbjct: 337 HP 338


>gi|281357729|ref|ZP_06244215.1| tyrosine recombinase XerD [Victivallis vadensis ATCC BAA-548]
 gi|281315676|gb|EFA99703.1| tyrosine recombinase XerD [Victivallis vadensis ATCC BAA-548]
          Length = 299

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 143/302 (47%), Gaps = 16/302 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  L  ERGLS  T  +Y  D  +F  +L   TE     +   Q+    I  ++   R 
Sbjct: 9   FIDYLVTERGLSSNTTAAYRSDLEEFRDWL---TERGF--KEWSQVDREAILDYLDAERD 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                 +L R L  +K   ++L +  I  +     M + K    LP  L+E +    VD 
Sbjct: 64  LGRETATLARRLVAVKMLSRFLTEEGILKKDVTAVMDSPKLWRILPDFLSEAE----VDA 119

Query: 141 VLLHTSHETKW-IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            L       K   + RN AIL +LY  GLR+SE   L    +  D   LR+ GKG K RI
Sbjct: 120 FLKAFPASVKEPFEMRNRAILEVLYSSGLRVSELARLPLTAVDFDNELLRVVGKGSKTRI 179

Query: 200 VPLLPSVRKAILEYY-DLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           VP+     + +  Y  D+ P     N + P +F    G+PLN       ++      G+ 
Sbjct: 180 VPIGKVALRTLRRYLADVRPLLAEKNPRSPYVFLSKSGRPLNREWIWNVVKVAAARAGIH 239

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            +   HTLRHSFA+HLL++G DLR IQ +LGH  +STT+IYT+++S      +  I+ + 
Sbjct: 240 KNIHPHTLRHSFASHLLAHGADLRVIQEMLGHADISTTEIYTHIDSNR----LAAIHHKF 295

Query: 318 HP 319
           HP
Sbjct: 296 HP 297


>gi|26991906|ref|NP_747331.1| site-specific tyrosine recombinase XerC [Pseudomonas putida KT2440]
 gi|34222832|sp|Q88CF1|XERC_PSEPK RecName: Full=Tyrosine recombinase xerC
 gi|24987029|gb|AAN70795.1|AE016723_7 integrase/recombinase XerC [Pseudomonas putida KT2440]
          Length = 299

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 151/316 (47%), Gaps = 47/316 (14%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +  +L  ER +S+ T Q Y  D  + + +      E+  I   + L   ++R  I++ 
Sbjct: 6   EAYCAHLRNERQVSEHTSQGYRRDLEKVIAYC-----EEHGIADWQALQIQQLRQLIARL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  RSL R LS ++   +YL +  +        +   K    LP+ L+  +AL L+
Sbjct: 61  HHHGQSPRSLARLLSAVRGLYRYLNREGLCQHDPANGLSAPKGERRLPKVLDTDRALQLL 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D  +     +  +I  R+ AIL L Y  GLR+SE  +L   ++      +++ GKG K R
Sbjct: 121 DGGV-----DDDFIARRDQAILELFYSSGLRLSELTNLDLDHLDLAAGLVQVLGKGGKAR 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF---------QRYIRQ 249
           ++P+    R+A+  +Y L              RGI G P +  VF          R +R 
Sbjct: 176 VLPVGRKAREALQAWYRL--------------RGI-GNPRDRAVFITRQGNRISPRAVR- 219

Query: 250 LR------RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           LR      R LG  L    H LRHSFA+H+L +  DLR++Q +LGH  +STTQIYT+++ 
Sbjct: 220 LRVKVAGERELGQHLHP--HMLRHSFASHVLESSQDLRAVQEMLGHADISTTQIYTHLDF 277

Query: 304 KNGGDWMMEIYDQTHP 319
           ++    +  +YD  HP
Sbjct: 278 QH----LAAVYDSAHP 289


>gi|71274794|ref|ZP_00651082.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71897599|ref|ZP_00679844.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71902531|ref|ZP_00684453.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71164526|gb|EAO14240.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71727745|gb|EAO30016.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71732502|gb|EAO34555.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
          Length = 324

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 152/307 (49%), Gaps = 24/307 (7%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L  L I+ GLS+ TL SY  D    L  LA +   +     +  L+   +  +++ R  Q
Sbjct: 31  LDALWIKHGLSRHTLNSYRRD----LEGLARWNNGRAG--PLATLTPPALLDYLTWRTQQ 84

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                S  R LS +++F  Y  +     ++    + +    + LP+AL E Q    ++ +
Sbjct: 85  HYSPLSNARLLSVLRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQ----IEAL 140

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           L   S ET     RN A+L L+Y  GLR+SE ++L    +   Q  LRI GKG K R+VP
Sbjct: 141 LAAPSIETP-EGLRNRAMLELMYAAGLRVSELVTLPVAMLNRRQGVLRITGKGGKERLVP 199

Query: 202 LLPSVRKAILEYYDLC--------PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           L    +  +  Y +          P   + +  +PLF     K L+   F R+I+     
Sbjct: 200 LGEESQHWLQRYLEQARPSLAADKPIPADSDGDVPLFINTNLKRLSRQQFWRWIKHYAAL 259

Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+ P   + H LRHSFATHLL++G DLR++Q +LGH  +STTQIYT +  ++    + +
Sbjct: 260 AGIAPNKVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTLIARQH----LQQ 315

Query: 313 IYDQTHP 319
           ++ Q HP
Sbjct: 316 LHAQHHP 322


>gi|146299694|ref|YP_001194285.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146154112|gb|ABQ04966.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 297

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 153/303 (50%), Gaps = 14/303 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +Q +   L+ E+  S  T+ +Y  D    L F   + +E+    +I +++Y++IR++I  
Sbjct: 5   KQAFQDYLQFEKKYSPHTVNAYLND----LGFFEEFNKERFEQDSIERVNYSQIRSWIVF 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q + + S+ R ++ +K+F K+L K K    S +L  + LK    +    +EK+    
Sbjct: 61  LVDQGVSNVSVNRKMASLKAFYKFLLKIKQIEVSPMLKHKALKTPKIVQIPFSEKE---- 116

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           V +++        + + R+  I+ L Y  G+R +E + L  +N+      +++ GK  K 
Sbjct: 117 VSDLMFGVESPIGFEEVRDKLIVDLFYTTGMRRAELIGLMLKNVDLSSGVVKVLGKRSKE 176

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVPLLP V   I  Y  +    D  ++ +   F   +G  L+     R I      +  
Sbjct: 177 RIVPLLPIVADQINLYIKEREQLDQIVDSEY-FFISKKGLKLSESFVYRLINCYFSRVSE 235

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            +  + H LRH+FATHLL+NG DL S++ +LGH  L++TQ+YT+    N    + ++Y +
Sbjct: 236 KVKKSPHVLRHTFATHLLNNGADLNSVKELLGHSSLASTQVYTH----NSLAELKKVYSE 291

Query: 317 THP 319
            HP
Sbjct: 292 AHP 294


>gi|260912682|ref|ZP_05919168.1| tyrosine recombinase XerC [Pasteurella dagmatis ATCC 43325]
 gi|260633060|gb|EEX51225.1| tyrosine recombinase XerC [Pasteurella dagmatis ATCC 43325]
          Length = 296

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/305 (32%), Positives = 151/305 (49%), Gaps = 26/305 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKI 83
           L IER +S  TL +Y+   RQ    +    E  +T  + ++++ + +R  +++  +T K+
Sbjct: 12  LRIERQVSPHTLSNYQ---RQLNRIVQILNENGMT--SWQEVTPSVVRFILAESSKTDKL 66

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
            ++SL   LS ++ FL YL ++     +    +   K+   LP+ ++ +Q   L+ N   
Sbjct: 67  HEKSLALRLSALRRFLTYLVQQDELKVNAATGISAPKQGRHLPKNIDAEQVQKLLSN--- 123

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
             S E   ID R+ AIL LLY  GLR+SE   L   +I      +R+ GKG+K RIVP  
Sbjct: 124 -DSKEP--IDIRDRAILELLYSSGLRLSELQGLNLNSINTRVREVRVIGKGNKERIVPFG 180

Query: 204 PSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
                AI ++  +     P D        LF    G  L     Q+ +       GL   
Sbjct: 181 RYASHAIQQWLKVRLLFNPKDD------ALFVSQLGNRLTHRTIQKRLEVWGIKQGLNSH 234

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++  D    +YD  HP
Sbjct: 235 LNPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAD----VYDSAHP 290

Query: 320 SITQK 324
              +K
Sbjct: 291 RAKRK 295


>gi|256420742|ref|YP_003121395.1| integrase family protein [Chitinophaga pinensis DSM 2588]
 gi|256035650|gb|ACU59194.1| integrase family protein [Chitinophaga pinensis DSM 2588]
          Length = 314

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 160/313 (51%), Gaps = 27/313 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +L  +++E+  S  T  +Y+ D  QF IFL + Y +  +++Q I   S+  +R +++   
Sbjct: 12  FLAYIQLEKRYSAHTFTAYQQDLTQFFIFLRSQYGD--VSLQGI---SHLHVRTWLAWLM 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + I  +S+ R +S +KSF KY  +  +   S +  +   K    LP  ++EK    + D
Sbjct: 67  EEGIVAKSVNRKISTLKSFFKYAMRHGVVVTSPMTKVTAPKTGKRLPGFIDEKGMEAVED 126

Query: 140 NVLLHTSHETKWIDARN------SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           N  +    E + I A +        I  LLY  G+R+SE + L  +++     TL++ GK
Sbjct: 127 NRSMRRGQEGRPIFADDLEGKTHRLIFELLYHTGIRLSELIGLQERHVDISNLTLKVLGK 186

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQL-R 251
           G+K RI+P+  ++R  I  Y  +    L +  +  L    R GK L P    RY+  + +
Sbjct: 187 GNKERIIPISKNLRDEIKGYRVMRDKALEMPDKEVLLVNPRSGKKLYP----RYVYNVVK 242

Query: 252 RYLGLPLSTT-----AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
            YL     TT      H LRH+FATHL +NG DL +++ +LGH  L++TQ+YT+    N 
Sbjct: 243 GYLTDHEITTISRRSPHILRHTFATHLTNNGADLNAVKELLGHASLASTQVYTH----NS 298

Query: 307 GDWMMEIYDQTHP 319
            + + + Y + HP
Sbjct: 299 IEKLKDAYRKAHP 311


>gi|237727927|ref|ZP_04558408.1| site-specific tyrosine recombinase XerC [Citrobacter sp. 30_2]
 gi|226910376|gb|EEH96294.1| site-specific tyrosine recombinase XerC [Citrobacter sp. 30_2]
          Length = 300

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 148/298 (49%), Gaps = 17/298 (5%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L +ER LS +TL +Y+   RQ    +A   E    +Q+ +Q     +R+F  + R +
Sbjct: 14  LRYLGVERQLSPITLLNYQ---RQLDAIIALAGE--TGLQSWQQCDAAMVRSFAVRSRRK 68

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +G  SL   LS ++SF  +L  +     +   ++   K    LP+ ++      L+D  
Sbjct: 69  GLGPASLALRLSALRSFFDWLVNQGELKANPAKSVSAPKAPRHLPKNIDVDDVNRLLDID 128

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           L         +  R+ A+L ++YG GLR+SE + L  +++  D   + + GKG K R +P
Sbjct: 129 L------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLP 182

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           +  +    I  + DL    L  +    LF    GK ++    Q+   +     GL     
Sbjct: 183 IGRNAVAWIEHWLDLR--GLFGSDDDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVH 240

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  +YD  HP
Sbjct: 241 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 294


>gi|260551079|ref|ZP_05825283.1| tyrosine recombinase XerD [Acinetobacter sp. RUH2624]
 gi|260405846|gb|EEW99334.1| tyrosine recombinase XerD [Acinetobacter sp. RUH2624]
          Length = 306

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/240 (33%), Positives = 130/240 (54%), Gaps = 11/240 (4%)

Query: 82  KIGD--RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           KIG   RS+ R LS ++ F K+L+++K+ +++ +    + K   +LP+ L+E+    L+ 
Sbjct: 74  KIGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQ 133

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              + T+     +  R+ A+  +LY CGLR+SE ++L  + I   Q  LRI GKG+K R+
Sbjct: 134 APDITTA-----LGLRDRAMFEVLYACGLRVSELINLRLELINLKQGYLRITGKGNKERL 188

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPL       +  Y +     L       LF    G  ++   F   I++      +   
Sbjct: 189 VPLGQYACDWVERYLNDARPQLYKTSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAE 248

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        M +++++ HP
Sbjct: 249 LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR----MQQLHEKHHP 304


>gi|153008242|ref|YP_001369457.1| site-specific tyrosine recombinase XerD [Ochrobactrum anthropi ATCC
           49188]
 gi|151560130|gb|ABS13628.1| tyrosine recombinase XerD [Ochrobactrum anthropi ATCC 49188]
          Length = 307

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 140/304 (46%), Gaps = 42/304 (13%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR--QLSYTEIRAFIS 76
           +N+L+ +  ERG ++ TL+SY  D             E ++ + +   +     IR+ I 
Sbjct: 8   ENFLEMMSAERGAAENTLESYRRDLEA--------VAEALSARGVNLAEAGADHIRSAID 59

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              T+     S  R LS ++ F ++L       +     +   KK   LP+ ++ +    
Sbjct: 60  AMATEGFAATSQARRLSALRQFFRFLYSEGYRQDDPTGTVDAPKKQKPLPKIMSVENVTK 119

Query: 137 LVDNVLLHTSHET----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           L+D   L TS E     ++   R  A++  LY  G+R+SE + L       D   L + G
Sbjct: 120 LLDRAALETSEEAEPAERFKALRLHALIETLYATGMRVSELVGLPVGVARIDHRFLLVCG 179

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY------ 246
           KG K R+VPL P  R+A+  +       L L   LP      G   NP +F  +      
Sbjct: 180 KGSKERMVPLSPKAREALQRF-------LALRDSLP------GSDDNPWLFPAFSESGHL 226

Query: 247 IRQL--RRYLGLPLS-------TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
            RQ+  R   GL           + H LRH+FA+HLL NG DLR++Q +LGH  +STTQI
Sbjct: 227 ARQVFARELKGLAARAGLSAAAVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQI 286

Query: 298 YTNV 301
           YT+V
Sbjct: 287 YTHV 290


>gi|324017291|gb|EGB86510.1| tyrosine recombinase XerD [Escherichia coli MS 117-3]
          Length = 298

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 157/304 (51%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +E+ L++ TL +Y    R   + + +     +T+ T +     +++A +++R
Sbjct: 9   EQFLDALWLEKNLAENTLNAYR---RDLSMMVEWLHHRGLTLATAQS---DDLQALLAER 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K   +    ++ + K    LP+ L+E Q   L+
Sbjct: 63  LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG+K R
Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL       +  Y +   P+ LN ++I + LF   R + +    F   I+      G+
Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQILLGHSDLSTTQIYTHVATER----LRQLHQ 292

Query: 316 QTHP 319
           Q HP
Sbjct: 293 QHHP 296


>gi|331654392|ref|ZP_08355392.1| tyrosine recombinase XerD [Escherichia coli M718]
 gi|331047774|gb|EGI19851.1| tyrosine recombinase XerD [Escherichia coli M718]
          Length = 298

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 157/304 (51%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +E+ L++ TL +Y    R   + + +     +T+ T +     +++A +++R
Sbjct: 9   EQFLDALWLEKNLAENTLNAYR---RDLSMMVEWLHHRGLTLATAQ---CDDLQALLAER 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K   +    ++ + K    LP+ L+E Q   L+
Sbjct: 63  LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG+K R
Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL       +  Y +   P+ LN ++I + LF   R + +    F   I+      G+
Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292

Query: 316 QTHP 319
           Q HP
Sbjct: 293 QHHP 296


>gi|15804400|ref|NP_290440.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7
           EDL933]
 gi|15833995|ref|NP_312768.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7
           str. Sakai]
 gi|168750377|ref|ZP_02775399.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4113]
 gi|168753708|ref|ZP_02778715.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4401]
 gi|168763936|ref|ZP_02788943.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4501]
 gi|168768092|ref|ZP_02793099.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4486]
 gi|168775638|ref|ZP_02800645.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4196]
 gi|168780710|ref|ZP_02805717.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4076]
 gi|168801125|ref|ZP_02826132.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC508]
 gi|195938100|ref|ZP_03083482.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7
           str. EC4024]
 gi|208806813|ref|ZP_03249150.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4206]
 gi|208813099|ref|ZP_03254428.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4045]
 gi|208821301|ref|ZP_03261621.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4042]
 gi|209397621|ref|YP_002273328.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4115]
 gi|217326194|ref|ZP_03442278.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. TW14588]
 gi|254795807|ref|YP_003080644.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7
           str. TW14359]
 gi|261225585|ref|ZP_05939866.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255631|ref|ZP_05948164.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291285225|ref|YP_003502043.1| Tyrosine recombinase xerC [Escherichia coli O55:H7 str. CB9615]
 gi|34222932|sp|Q8X4T6|XERC_ECO57 RecName: Full=Tyrosine recombinase xerC
 gi|254799334|sp|B5YY58|XERC_ECO5E RecName: Full=Tyrosine recombinase xerC
 gi|12518679|gb|AAG59004.1|AE005612_7 site-specific recombinase, acts on cer sequence of ColE1, effects
           chromosome segregation at cell division [Escherichia
           coli O157:H7 str. EDL933]
 gi|13364217|dbj|BAB38164.1| site-specific recombinase XerC [Escherichia coli O157:H7 str.
           Sakai]
 gi|187768906|gb|EDU32750.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4196]
 gi|188015455|gb|EDU53577.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4113]
 gi|189001561|gb|EDU70547.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4076]
 gi|189358976|gb|EDU77395.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4401]
 gi|189362670|gb|EDU81089.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4486]
 gi|189365973|gb|EDU84389.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4501]
 gi|189376684|gb|EDU95100.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC508]
 gi|208726614|gb|EDZ76215.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4206]
 gi|208734376|gb|EDZ83063.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4045]
 gi|208741424|gb|EDZ89106.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4042]
 gi|209159021|gb|ACI36454.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4115]
 gi|209753248|gb|ACI74931.1| putative phosphatase [Escherichia coli]
 gi|209753250|gb|ACI74932.1| putative phosphatase [Escherichia coli]
 gi|209753252|gb|ACI74933.1| putative phosphatase [Escherichia coli]
 gi|209753254|gb|ACI74934.1| putative phosphatase [Escherichia coli]
 gi|209753256|gb|ACI74935.1| putative phosphatase [Escherichia coli]
 gi|217322415|gb|EEC30839.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. TW14588]
 gi|254595207|gb|ACT74568.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str.
           TW14359]
 gi|290765098|gb|ADD59059.1| Tyrosine recombinase xerC [Escherichia coli O55:H7 str. CB9615]
 gi|320191096|gb|EFW65746.1| Tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC1212]
 gi|320639294|gb|EFX08916.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7
           str. G5101]
 gi|320644679|gb|EFX13729.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H-
           str. 493-89]
 gi|320650004|gb|EFX18507.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H-
           str. H 2687]
 gi|320655350|gb|EFX23292.1| site-specific tyrosine recombinase XerC [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320660976|gb|EFX28419.1| site-specific tyrosine recombinase XerC [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320666100|gb|EFX33114.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7
           str. LSU-61]
 gi|326344267|gb|EGD68027.1| Tyrosine recombinase XerC [Escherichia coli O157:H7 str. 1125]
 gi|326347905|gb|EGD71619.1| Tyrosine recombinase XerC [Escherichia coli O157:H7 str. 1044]
          Length = 298

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 152/307 (49%), Gaps = 17/307 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+   RQ    + F +E    +Q  +Q     +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--GLQNWQQCDAAMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKTPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DINRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNALSWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHP 319
           +YD  HP
Sbjct: 286 VYDAAHP 292


>gi|124268427|ref|YP_001022431.1| tyrosine recombinase XerC subunit [Methylibium petroleiphilum PM1]
 gi|124261202|gb|ABM96196.1| tyrosine recombinase XerC subunit [Methylibium petroleiphilum PM1]
          Length = 335

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 152/313 (48%), Gaps = 27/313 (8%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           LQ+L +ER LS  TL +YE   R+          ++  +  +R +    +R ++++    
Sbjct: 39  LQHLRVERRLSAKTLLNYEEAFRRL-----GEAAQRDGV-ALRAVQPHHVRHWMARLHAG 92

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +  RS+  +LS  +   ++L        + +  +R  + +  LP+AL+   A+ L D+ 
Sbjct: 93  GLAPRSIAIALSAWRGLYRWLGHEGRVALNPVEGLRAPRAAKPLPKALSVDHAVALADHR 152

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQN-----IMDDQSTLRIQGKG 194
            +        ++AR+  ++ LLYGCGLR++E   L +TP       I    +   + GKG
Sbjct: 153 QVDGDAR---LEARDRCLVELLYGCGLRVAELVDLDVTPGGGALGWIDRADAEAHVLGKG 209

Query: 195 DKIRIVPLLPSVRKAILEYYD--LCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLR 251
            K R VP    V +A L   D  L        +  P LF    G+ L     +  +++  
Sbjct: 210 SKRRSVP----VGRAALAALDDWLAQRGSVAQVDEPALFVSRHGRRLTASQVRTRLKERA 265

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              GLP     H LRHS+A+HLL + GDLR++Q +LGH  ++TTQ+YT ++ ++    + 
Sbjct: 266 IQAGLPTHVHPHMLRHSYASHLLQSSGDLRAVQELLGHANITTTQVYTKLDFQH----LA 321

Query: 312 EIYDQTHPSITQK 324
           + YD  HP   +K
Sbjct: 322 KAYDAAHPRARKK 334


>gi|307823520|ref|ZP_07653749.1| tyrosine recombinase XerD [Methylobacter tundripaludum SV96]
 gi|307735505|gb|EFO06353.1| tyrosine recombinase XerD [Methylobacter tundripaludum SV96]
          Length = 294

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/311 (30%), Positives = 156/311 (50%), Gaps = 40/311 (12%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  + +E+GLS+ TL +Y  D R F    A + ++K     I ++   ++  F+  R  
Sbjct: 10  FLDAVWVEQGLSENTLSAYGSDLRIF----AKWLKDK----PILEVDGGQLSDFLEGRHK 61

Query: 81  QKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           + IG+RS  R LS ++ F  Y +++  I  +   L + +      LP++L+E     L  
Sbjct: 62  EGIGNRSTARILSSLRRFYGYYIRENSIKIDPTAL-IESPHIGQPLPKSLSE-----LDV 115

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            +LL     T  +  R+  +L +LY  GLR+SE ++L  + I   Q  +RI GKG+K R+
Sbjct: 116 ELLLDAPEVTNALGFRDRTMLEMLYATGLRVSELVNLKFEQISFRQGVVRIIGKGNKERL 175

Query: 200 VPL-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           VP+           +   RK IL     C +         LF   R   +    F   I+
Sbjct: 176 VPVGEVAMGWLEEYMVQARKTILGERQ-CDY---------LFVTNRADSMTRQAFWHIIK 225

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +  +   +    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT++  +    
Sbjct: 226 RHAKKAQINKELSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHIARER--- 282

Query: 309 WMMEIYDQTHP 319
            + E++ + HP
Sbjct: 283 -LKELHSKYHP 292


>gi|33600415|ref|NP_887975.1| site-specific tyrosine recombinase XerD [Bordetella bronchiseptica
           RB50]
 gi|33568014|emb|CAE31927.1| integrase/recombinase [Bordetella bronchiseptica RB50]
          Length = 310

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 140/281 (49%), Gaps = 14/281 (4%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEK--ITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +E GL+  TL +Y  D   F  +L          T  ++R+    +I A+ + R  +   
Sbjct: 22  LEDGLAANTLAAYRRDLSAFAQWLENPACHPGLATGASLREAGKGDIEAWFAARHAESRA 81

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +  R L+ ++ F  +  + ++T     L +   K+   LP+ L+E Q   L+    L 
Sbjct: 82  T-TANRRLAALRRFYAWALRERLTPSDPCLTLVTAKQPPRLPKTLSEAQVDALLQAPDLD 140

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLL 203
           T+        R+ A+L  LY  GLR+SE +S+   ++  ++  +R+  GKG K R+VPL 
Sbjct: 141 TARGL-----RDRAMLETLYATGLRVSELVSVKALDVSLNEGVVRVVMGKGGKDRLVPLG 195

Query: 204 PSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ--LRRYLGLPLST 260
                 I  Y     P  L   +   LF   R +P++   F + +++  L   +  PLS 
Sbjct: 196 AEAAHWIERYAGSARPELLGARVADALFVTARAEPMSRQAFWQLVKKYALAADIRAPLSP 255

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             H LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 256 --HVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHV 294


>gi|229822894|ref|ZP_04448964.1| hypothetical protein GCWU000282_00184 [Catonella morbi ATCC 51271]
 gi|229787707|gb|EEP23821.1| hypothetical protein GCWU000282_00184 [Catonella morbi ATCC 51271]
          Length = 302

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 155/309 (50%), Gaps = 26/309 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q++ + L ++   S  T+QSY  D  +F    A+ TE+ I    +  +    +RAF++K 
Sbjct: 10  QDFERYLLLDMNRSANTIQSYGRDLAKFQ---AYLTEQGI--DKVEAIDEVTVRAFLAKL 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS +K F  +L+K  I   + +  +   K+   LP+ L   +   L+
Sbjct: 65  SQDAYAASSTSRMLSSLKQFFLFLRKEGILETNPMSLVHRPKQGRHLPKVLTASEIEALL 124

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                 + H       R+ AI  L+Y  GLR++E + L  +++  +   ++  GKGDK R
Sbjct: 125 QAPDTSSPH-----GLRDRAIFELMYATGLRVTELVQLKLEDLHLELGFIQTLGKGDKER 179

Query: 199 IVPLLPSVRKAILEYYD-LCPFDLNLNIQLP---LFRGIRGKPLN-PGVFQRYIRQLRRY 253
           +VPL+    + +  Y + + P  L L        +F   RGK     G++    + L +Y
Sbjct: 180 LVPLIDEAIEWLEAYLEQVRPSFLRLAGSASPQEVFLTERGKAFTRQGIW----KNLNKY 235

Query: 254 L---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           +   G+  + + H LRHSFATHLL NG DLR +Q +LGH  +STTQIYT+++++     +
Sbjct: 236 VALAGIKQTVSPHMLRHSFATHLLENGADLRMVQELLGHADISTTQIYTHISTQR----L 291

Query: 311 MEIYDQTHP 319
            E+Y +  P
Sbjct: 292 QEVYRKYFP 300


>gi|156973275|ref|YP_001444182.1| site-specific tyrosine recombinase XerD [Vibrio harveyi ATCC
           BAA-1116]
 gi|156524869|gb|ABU69955.1| hypothetical protein VIBHAR_00956 [Vibrio harveyi ATCC BAA-1116]
          Length = 305

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 149/303 (49%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + +ERGLS+ TL SY  D    +  LA+  +    +  I      E ++++   
Sbjct: 16  EQFLDAMWMERGLSENTLASYRND---LMKLLAWMEQHSYRLDFISLSGLQEYQSYLVDL 72

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             ++    S  R LS I+   +Y+ + K+  +     + + K    LP+ ++E+Q     
Sbjct: 73  DYKQT---SRARMLSAIRRLFQYIHREKVRADDPSALLVSPKLPQRLPKDISEEQV---- 125

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            + LL        ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG K R
Sbjct: 126 -DALLDAPDPNDPVELRDKAMLELLYATGLRVTELVSLTMENVSLRQGLVRVTGKGGKER 184

Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+  +    I  +       L        +F   R + +    F   I+      G+ 
Sbjct: 185 LVPMGENAVDWIETFIQQGRSALLGETTSDVVFPSKRARQMTRQTFWHRIKYYAVIAGID 244

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +I+ Q
Sbjct: 245 TDQLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIHSQ 300

Query: 317 THP 319
            HP
Sbjct: 301 HHP 303


>gi|145639433|ref|ZP_01795038.1| tyrosine recombinase [Haemophilus influenzae PittII]
 gi|145271480|gb|EDK11392.1| tyrosine recombinase [Haemophilus influenzae PittII]
          Length = 295

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 151/304 (49%), Gaps = 25/304 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L IER +S  T+ +Y+      +  LA     +  I +  Q++ + +R  +++ + Q + 
Sbjct: 12  LRIERQMSPHTITNYQHQLDATIKILA-----QQDIHSWTQVTPSVMRFILAESKKQGLK 66

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           ++SL   LS ++ FL +L ++     +    +   K+   LP+ ++ +Q    V  +L +
Sbjct: 67  EKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQ----VQQLLAN 122

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            S E   ID R+ AIL L+Y  GLR+SE   L   +I      +R+ GKG+K R+VP   
Sbjct: 123 DSKEP--IDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGR 180

Query: 205 SVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
               AI E+  +     P D        LF    G  ++    Q+ +        L    
Sbjct: 181 YASHAIQEWLKVRALFNPKDE------ALFVSQLGNRISHRAIQKRLETWGIRQDLNSHL 234

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
             H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    + E+YDQ HP 
Sbjct: 235 NPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEVYDQAHPR 290

Query: 321 ITQK 324
             +K
Sbjct: 291 AKRK 294


>gi|237749023|ref|ZP_04579503.1| tyrosine recombinase XerD [Oxalobacter formigenes OXCC13]
 gi|229380385|gb|EEO30476.1| tyrosine recombinase XerD [Oxalobacter formigenes OXCC13]
          Length = 312

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/294 (29%), Positives = 145/294 (49%), Gaps = 15/294 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +E GLSK TL +Y    R+ L+  A + E+      + ++    +  +   R  +     
Sbjct: 26  LEDGLSKNTLDAY----RRDLLLFARWLEKNCPDIDLLKVDQNHLNDYFWARHAESKAT- 80

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R L+ +K F +   +    +E+  L ++  K++   P+ L+E Q        LL   
Sbjct: 81  SANRRLTVLKRFYRLQLRLGRISENPCLKLKAAKQAARFPKTLSETQV-----EALLGAP 135

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
            + K +  R+ A++ L+Y  GLR+SE + L    +  ++  LRI GKG+K R+VP     
Sbjct: 136 DQEKSLGLRDRAMIELMYASGLRVSELVDLKLVEVGMNEGVLRIIGKGEKTRLVPFGEEA 195

Query: 207 RKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           R  +  Y  D     L   +   LF   RG  +   +F   I++     G+    + HTL
Sbjct: 196 RVWLERYMQDARSLILAGKMSDYLFVTARGTAMTRQMFWTLIKKYALKSGIHEPLSPHTL 255

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           RH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     + +++   HP
Sbjct: 256 RHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVAQQR----LKQLHAMHHP 305


>gi|224372664|ref|YP_002607036.1| phage integrase [Nautilia profundicola AmH]
 gi|223589882|gb|ACM93618.1| phage integrase [Nautilia profundicola AmH]
          Length = 275

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 153/306 (50%), Gaps = 47/306 (15%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L+I +G+SK T ++Y+ D  QF        EE I  + I +    +I +F+S  
Sbjct: 6   EAFLEYLQINKGVSKNTYEAYKRDLLQF--------EEYIK-KPIIEADNMDIISFLSS- 55

Query: 79  RTQKIGD-RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
               IG+ RSL R LS I SF  +  K  ++   +   ++  K   +LP+ L +++ L  
Sbjct: 56  ----IGNKRSLNRKLSSINSFFDFAYKHGMSDTKH--KIKQAKIPKTLPKFLTKEEILNA 109

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           + N+        KW D R+ +++  +Y  GLRISEAL+    +I +    + +  KG+K 
Sbjct: 110 IKNI-----KPEKWFDLRDKSLILFIYATGLRISEALNTKISDIENGWVKVTM-AKGEKQ 163

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP----GVFQRYIRQLRRY 253
           RIVP+      AI EY    P          LF     KPL+      + ++Y       
Sbjct: 164 RIVPIAKVALDAIEEYLKKRPCQSEY-----LFVNKDCKPLSRISAFNITKKY------- 211

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
               L+ + H LRHSFAT L+  G DLR +Q +LGH  L+TTQIYT++  +N  D ++  
Sbjct: 212 ----LNVSPHVLRHSFATALVLGGADLRVVQELLGHSSLNTTQIYTHIQKENLKDTVI-- 265

Query: 314 YDQTHP 319
             + HP
Sbjct: 266 --KYHP 269


>gi|42526714|ref|NP_971812.1| integrase/recombinase XerD [Treponema denticola ATCC 35405]
 gi|41817029|gb|AAS11723.1| integrase/recombinase XerD [Treponema denticola ATCC 35405]
          Length = 274

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 139/259 (53%), Gaps = 16/259 (6%)

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
           +E ++   I   +  +   FI  R    I  +++ + ++ + SF ++L    +  ++   
Sbjct: 5   QEHMSDSLIENATEADCIDFILHRSESGIMAKTIAKDIAALNSFFRFLIIEGVRKDNPSE 64

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           ++   K+  +LPR L+  +  +L   + L + +     + R+ A+  L+Y  GLR+SE +
Sbjct: 65  SIERPKREKTLPRVLSPDEVDSLFAAIPLDSPN-----NIRDRALFELIYSAGLRVSEIV 119

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-------NLNIQL 227
           +L  ++I  D+  +++ GKG+K RIVP   + +  + +Y      +L       N  I  
Sbjct: 120 NLKMEDIFYDEDLIKVTGKGNKERIVPFGSAAKYWLKQYILEARTELLKPKHPENTLISG 179

Query: 228 PLFRGIRGKPLN-PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
            +F   RG  L   G+++R I +L  + G+   T  HTLRHS+ATHLL+ G DLRS+Q +
Sbjct: 180 SVFLNNRGAVLTRKGIWKR-INELSNFSGI--ETKVHTLRHSYATHLLAGGADLRSVQCL 236

Query: 287 LGHFRLSTTQIYTNVNSKN 305
           LGH  +STTQ+YT++  K+
Sbjct: 237 LGHSDISTTQVYTHIEDKS 255


>gi|199599532|ref|ZP_03212920.1| Integrase [Lactobacillus rhamnosus HN001]
 gi|199589573|gb|EDY97691.1| Integrase [Lactobacillus rhamnosus HN001]
 gi|259649723|dbj|BAI41885.1| integrase [Lactobacillus rhamnosus GG]
          Length = 298

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 150/307 (48%), Gaps = 20/307 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +K    + + L +ER  S  T+ +Y  D ++F  FL    +         ++   +++ +
Sbjct: 1   MKPLAAFQEYLTVERQYSPETVTAYLNDIQEFQAFL----KANGGFTDFSKVDDLDVQTY 56

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQ 133
           ++    Q +   S+ R +S ++SF +YL +  +  + N   +  LKK +  LP+   E +
Sbjct: 57  LTDLNKQALARTSIARKISSLRSFYRYLVRIDVV-KRNPFELVELKKQHHHLPQFFYEAE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L   V   T      +D RN A+L +LYG G+R+SE  +LT   +  +   L I GK
Sbjct: 116 IQELFKTVEGKTP-----LDQRNRALLEVLYGTGIRVSECANLTLNQVDFNTGLLLIHGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           G+K R VP     ++A+  Y        +   D+       +F    G+P+     +  +
Sbjct: 171 GNKDRYVPFGRYAQRALQTYLKDGRQTLMNKRDVQHRF---VFVNQYGRPITARGIEYIL 227

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            QL +   L  +   H LRHSFATH+L +G DLR++Q +LGH  LSTTQIYT+V   +  
Sbjct: 228 DQLIKQTSLIANIHPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLK 287

Query: 308 DWMMEIY 314
           +  M+ Y
Sbjct: 288 NEYMKYY 294


>gi|161505543|ref|YP_001572655.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866890|gb|ABX23513.1| hypothetical protein SARI_03708 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 300

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 152/311 (48%), Gaps = 17/311 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +    L ++   +L+ L +ER LS +TL +Y+   RQ    +A   E    +++ +Q   
Sbjct: 1   MTDVALSQDVSRFLRYLGVERQLSPITLLNYQ---RQLDAIIALAGEA--GLKSWQQCDA 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ 
Sbjct: 56  VMVRGFAVRSRRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKN 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++      L+D  L         +  R+ A+L ++YG GLR+SE + L  +++  D   +
Sbjct: 116 IDVDDVNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEV 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +P+  +    I  + DL    L  + +  LF    GK ++    Q+   
Sbjct: 170 WVMGKGSKERRLPIGRNAVTWIEHWLDLR--GLFASDEEALFLSKLGKRISARNVQKRFA 227

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++   
Sbjct: 228 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 284

Query: 309 WMMEIYDQTHP 319
            +  +YD  HP
Sbjct: 285 -LASVYDAAHP 294


>gi|120602210|ref|YP_966610.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
 gi|120562439|gb|ABM28183.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
          Length = 472

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/184 (41%), Positives = 103/184 (55%), Gaps = 6/184 (3%)

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           T V+++   T H  + I  R+ A+  LLYG GLRISEAL L   +       +R+ GKG 
Sbjct: 241 TAVESMSGDTLH-AEAIRRRDLALAELLYGSGLRISEALGLDVLDADPSAGVVRVLGKGS 299

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R+ PL  +   A+ E+       L    +  LF G RG  L+     R I  L R  G
Sbjct: 300 KERMSPLSDTSADALREWLHFR-HHLASEGERALFVGARGGRLDRRQATRIIDALCRRAG 358

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           LP S + H LRHSFATHLL  G DLRS+Q +LGH RL+TTQ YT++   +    ++E+YD
Sbjct: 359 LPQSVSPHGLRHSFATHLLEAGADLRSVQELLGHARLATTQRYTHLTLAH----LIEVYD 414

Query: 316 QTHP 319
           + HP
Sbjct: 415 KAHP 418



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L ++E+E+G S  T+ +Y  D  QF   L   T E   +     ++   ++ ++++   
Sbjct: 49  FLAHVELEKGYSPATVTAYGTDLMQFHGVL---TAEGFGLDAPENVTRRHVQRYLAELHR 105

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            +    S+ R LS +++F +Y+ + +  T   +  + N ++    PR LN  Q   L+D 
Sbjct: 106 LRTARSSVARKLSALRAFFRYMLRLRRVTADPVAAVHNPRQEKRQPRTLNVDQVFALLDT 165


>gi|149927220|ref|ZP_01915477.1| Tyrosine recombinase XerD [Limnobacter sp. MED105]
 gi|149824159|gb|EDM83380.1| Tyrosine recombinase XerD [Limnobacter sp. MED105]
          Length = 299

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 150/296 (50%), Gaps = 17/296 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E GL+K TLQ+Y  D +Q    L  + +E    + + Q S   IR  +      ++ 
Sbjct: 15  LWLEEGLAKATLQAYRGDLQQ----LGNWLDEHFA-ENLLQASNEHIRNHVHD--LLELK 67

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             SL R LS  K F  +L   +   ++    +++ K+   +P+ L+EKQ L L+    L 
Sbjct: 68  PSSLNRKLSSYKRFYLWLNTTRQREDNPCSQLQSAKRGLRIPKTLSEKQVLDLLSAPDLS 127

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            +        R+ A+L  +Y  GLR+SE +++  + +  +   +++ GKG K R+VP+  
Sbjct: 128 NA-----AGQRDKAMLEFMYASGLRVSELVNMPLRAVDLNVGAVKVLGKGKKERLVPMGE 182

Query: 205 SVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
             R AI  Y      +L        LF    G P+    F +  ++L    G+  + + H
Sbjct: 183 PARLAIQLYLQQARGELLKGKTSDFLFVTHFGTPMTRQGFWKNTKRLALIAGINTTVSPH 242

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            LRH+FATHL+++G DLR +Q +LGH  + TTQIYT+V  ++    +  + +Q+HP
Sbjct: 243 VLRHAFATHLINHGADLRVVQLLLGHADIGTTQIYTHVAKEH----LHTLLNQSHP 294


>gi|283834576|ref|ZP_06354317.1| tyrosine recombinase XerC [Citrobacter youngae ATCC 29220]
 gi|291069704|gb|EFE07813.1| tyrosine recombinase XerC [Citrobacter youngae ATCC 29220]
          Length = 300

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 147/298 (49%), Gaps = 17/298 (5%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L +ER LS +TL +Y+   RQ    +A   E    +Q+ +Q     +R+F  + R +
Sbjct: 14  LRYLGVERQLSPITLLNYQ---RQLDAIIALAGE--TGLQSWQQCDAAMVRSFAVRSRRK 68

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +G  SL   LS ++SF  +L  +     +   ++   K    LP+ ++      L+D  
Sbjct: 69  GLGPASLALRLSALRSFFDWLVNQGELKANPAKSVSAPKAPRHLPKNIDVDDVNRLLDID 128

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           L         +  R+ A+L ++YG GLR+SE + L  +++  D   + + GKG K R +P
Sbjct: 129 L------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLP 182

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           +  +    I  + DL    L       LF    GK ++    Q+   +     GL     
Sbjct: 183 IGRNAVAWIEHWLDLR--GLFGGDDDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVH 240

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  +YD  HP
Sbjct: 241 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 294


>gi|184200720|ref|YP_001854927.1| tyrosine recombinase XerC [Kocuria rhizophila DC2201]
 gi|183580950|dbj|BAG29421.1| tyrosine recombinase XerC [Kocuria rhizophila DC2201]
          Length = 378

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 139/301 (46%), Gaps = 14/301 (4%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           +L +ER  S+ T++SY  D      ++  +      I     L    +R ++++R  + +
Sbjct: 85  HLSLERSRSENTVRSYTSDVADLSRWMLEHG-----IDGADLLDRDALRGWLAQRHQRGL 139

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD---N 140
              S+ R ++ + +F ++    +         +R  + +  LP  +       ++D   +
Sbjct: 140 ARSSVSRGIAAVHTFFRWAVDTQGLRHDPAAGLRGPRPARHLPDVVGATALAEMLDALGD 199

Query: 141 VLL--HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           V L  H       + AR+ A+L LLY  G RISE + L   ++   Q  L I GKGDK R
Sbjct: 200 VALGPHEEESDAALAARDWALLELLYATGARISELVGLDRAHVDRAQHVLTITGKGDKQR 259

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            VP       A+  +    P          +F G RG  ++P V +R +      +    
Sbjct: 260 RVPYGERAGDALAVWEHRRPALATERAGDAVFVGARGGRIDPRVARRVVADALNDVPDTS 319

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           +   H+LRHS ATHLL  G DLR++Q +LGH  ++TTQIYT+V+ +     +   Y Q H
Sbjct: 320 ARGPHSLRHSAATHLLDGGADLRTVQELLGHATVATTQIYTHVSVER----IKRAYSQAH 375

Query: 319 P 319
           P
Sbjct: 376 P 376


>gi|145300550|ref|YP_001143391.1| tyrosine recombinase XerC [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142853322|gb|ABO91643.1| tyrosine recombinase XerC [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 322

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 155/314 (49%), Gaps = 19/314 (6%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E +   L  E   +++ L +ER LS  T  +YE   +     L      ++ +    +L 
Sbjct: 14  EPLPASLADELAAFIEYLRVERQLSPHTRSNYESHLQAMAAELV-----RLGVSDWARLE 68

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
            +++R+ +++     +  RSL   +S ++SF  +  ++   T +    +   K+   LP+
Sbjct: 69  ASQVRSLVTRMHKAGLAPRSLSTKISALRSFCDWQVRQGRLTANPARGIVTPKQGRPLPK 128

Query: 128 ALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
            L+       VD +  LL+ + E   +  R+ AI+ L+Y  GLR++E + L   +I  D 
Sbjct: 129 NLD-------VDEMYQLLNITDEQDPLAVRDRAIMELMYSSGLRLAELVGLNLGDIKLDD 181

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             L++ GKG + R++P+     + + ++  + P  L  +    LF   R + L+    Q 
Sbjct: 182 RQLKVTGKGSRERVLPMGRMAVEWLHKWLKVRPL-LAGDEADALFVSKRKQRLSARSVQE 240

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +        L      H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++
Sbjct: 241 RLDGWGNKQALNAHVHPHKLRHSFATHMLESSGDLRAVQELLGHADLSTTQIYTHLDFQH 300

Query: 306 GGDWMMEIYDQTHP 319
               + ++YD  HP
Sbjct: 301 ----LAKVYDNAHP 310


>gi|310287153|ref|YP_003938411.1| Integrase/recombinase XerC [Bifidobacterium bifidum S17]
 gi|309251089|gb|ADO52837.1| Integrase/recombinase XerC [Bifidobacterium bifidum S17]
          Length = 334

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 154/334 (46%), Gaps = 46/334 (13%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L   RGLS  T+++Y  D R+ L  LA        I  +RQ++  ++R +++   T
Sbjct: 10  FLAYLRANRGLSDNTVKAYGTDVRECLHALA-----SRGIADLRQVTTDDLRGWMAFE-T 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     S+ R +  ++SF  +  +           +   K  ++LP  L E QA  L+D 
Sbjct: 64  RDHARSSMARKVVSVRSFFAWAHEHGRIEADPAAVLMTPKLPDTLPSVLTEAQAERLMDR 123

Query: 141 V----LLHTSHETKW-------------------------IDARNSAILYLLYGCGLRIS 171
           V     LH +   ++                         +  R++A+L LLY  G+R++
Sbjct: 124 VDDDASLHAASSQRYETRHDEMPRLDSAHRGEGMSQRDEVVALRDAAMLELLYATGIRVA 183

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQ---- 226
           E + L   ++     T+R+ GKG K R+VP      KA+  + +   P  L         
Sbjct: 184 ELVGLDIGDVDWSHRTIRVTGKGSKQRVVPFGDPAEKALAGWKEHGRPLILRRAGAGTLD 243

Query: 227 -LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
              LF G+RG+ ++  + +  + +  R  G+P   + H+LRHS ATH+L  G DLR +Q 
Sbjct: 244 TAALFLGMRGRRIDQRIVRDVVHRAARESGVP-DISPHSLRHSAATHMLDGGADLREVQE 302

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           +LGH  L TTQ YT+V+ +     + E Y Q  P
Sbjct: 303 MLGHSSLRTTQRYTHVSIEQ----LKERYRQAFP 332


>gi|156932654|ref|YP_001436570.1| site-specific tyrosine recombinase XerD [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156530908|gb|ABU75734.1| hypothetical protein ESA_00437 [Cronobacter sakazakii ATCC BAA-894]
          Length = 319

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 158/314 (50%), Gaps = 17/314 (5%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E+   + L   + +L  L +ER L++ +L +Y  D    + +L        T+Q+     
Sbjct: 19  EVAVEQDLARIEQFLDALWLERNLAENSLSAYRRDLSMVVEWLHHRGLSLATVQS----- 73

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
             +++  +++R        S  R LS ++   ++L + KI  +     + + K    LP+
Sbjct: 74  -GDLQTLLAERVEGGYKATSTARMLSAVRRLFQHLYREKIRDDDPSALLASPKLPQRLPK 132

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L+E Q    V+ +L   + E   I+ R+ A+L +LY  GLR+SE + LT  ++   Q  
Sbjct: 133 DLSEAQ----VERLLQAPTVEEP-IELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGV 187

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           +R+ GKG+K R+VPL       + +Y     P+ LN      LF   R + +    F   
Sbjct: 188 VRVIGKGNKERLVPLGEEAVYWLEQYLTHGRPWLLNGQSLDILFPSNRARQMTRQTFWHR 247

Query: 247 IRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           I+   +  G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++ 
Sbjct: 248 IKHYAQLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 307

Query: 306 GGDWMMEIYDQTHP 319
               + +++ Q HP
Sbjct: 308 ----LRQLHQQHHP 317


>gi|311064016|ref|YP_003970741.1| integrase/recombinase [Bifidobacterium bifidum PRL2010]
 gi|310866335|gb|ADP35704.1| Integrase/recombinase [Bifidobacterium bifidum PRL2010]
          Length = 334

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 154/334 (46%), Gaps = 46/334 (13%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L   RGLS  T+++Y  D R+ L  LA        I  +RQ++  ++R +++   T
Sbjct: 10  FLAYLRANRGLSDNTVKAYGTDVRECLHALA-----SRGIADLRQVTTDDLRGWMAFE-T 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     S+ R +  ++SF  +  +           +   K  ++LP  L E QA  L+D 
Sbjct: 64  RDHARSSMARKVVSVRSFFAWAHEHGRIEADPAAVLMTPKLPDTLPSVLTEAQAERLMDR 123

Query: 141 V----LLHTSHETKW-------------------------IDARNSAILYLLYGCGLRIS 171
           V     LH +   ++                         +  R++A+L LLY  G+R++
Sbjct: 124 VDDDASLHAASSQRYETRHDEMPRLDSAHRGEGMSQRDEVVALRDAAMLELLYATGIRVA 183

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQ---- 226
           E + L   ++     T+R+ GKG K R+VP      KA+  + +   P  L         
Sbjct: 184 ELVGLDIGDVDWSHRTIRVTGKGSKQRVVPFGDPAEKALAGWKEHGRPLILRRAGAGTLD 243

Query: 227 -LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
              LF G+RG+ ++  + +  + +  R  G+P   + H+LRHS ATH+L  G DLR +Q 
Sbjct: 244 TAALFLGMRGRRIDQRIVRDVVHRAARESGVP-DISPHSLRHSAATHMLDGGADLREVQE 302

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           +LGH  L TTQ YT+V+ +     + E Y Q  P
Sbjct: 303 MLGHSSLRTTQRYTHVSIEQ----LKERYRQAFP 332


>gi|269103726|ref|ZP_06156423.1| tyrosine recombinase XerC [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268163624|gb|EEZ42120.1| tyrosine recombinase XerC [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 306

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 158/311 (50%), Gaps = 16/311 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++   L +  + + + L  ER LS  T Q+Y+   RQ         E ++T  + +QL  
Sbjct: 5   VIPTSLSRPLERFYEYLRSERELSLHTQQNYK---RQLSTIAEQLVEMQVT--SWQQLDA 59

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R   SK     +   SL   LS ++SFL +L  +     +    +   KK+  LP+ 
Sbjct: 60  GWVRQIASKGMRSGLKASSLGMRLSALRSFLDFLVFQGDLKANPAKGVSAPKKARPLPKN 119

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+  +    +D +L     +   +  R+ A++ L+YG GLR+SE + L  ++I   +  L
Sbjct: 120 LDVDE----MDQLLSVEGDDP--LSIRDRAMMELMYGAGLRLSELVGLNLKDIQLTKGDL 173

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R+ GKGDK RIVP     ++ +  +  +    L  + +  LF   RG  ++    Q+ + 
Sbjct: 174 RVIGKGDKERIVPFSGLAKEWVGNWLKVRA-TLAHSDEPALFVSKRGMRISNRNVQKRME 232

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +  +   +      H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++   
Sbjct: 233 EWGQKQAVSSHINPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH--- 289

Query: 309 WMMEIYDQTHP 319
            + ++YD+ HP
Sbjct: 290 -LAKVYDEAHP 299


>gi|323141913|ref|ZP_08076774.1| tyrosine recombinase XerD [Phascolarctobacterium sp. YIT 12067]
 gi|322413660|gb|EFY04518.1| tyrosine recombinase XerD [Phascolarctobacterium sp. YIT 12067]
          Length = 297

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 151/301 (50%), Gaps = 19/301 (6%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + L +E GL+K T  +Y  D R  +  L    +E++      Q+S  ++ A++ + + + 
Sbjct: 10  EYLTVELGLAKNTQLAYMRDLRLLMKSLQLKADEELL-----QVSRQQLIAYLVRLKQEG 64

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
               ++ R L+ IK+F ++L   +    +    +    +   LP+ L+ ++   L+D   
Sbjct: 65  RAASTVARKLASIKAFYRFLTAERYIRRNPAEVLEAASRGLHLPKVLSVQEVERLLDEPN 124

Query: 143 LHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           L T      +D  R+  +L LLY  G+R+SE +++  +N+      + + GKG K R++P
Sbjct: 125 LGT------LDGYRDKTMLELLYATGMRVSELVNVPVKNVDMKMQYVIVMGKGSKERMLP 178

Query: 202 LLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           L  +    +  Y  +    L     +    LF    G P+    F   I    +  G+  
Sbjct: 179 LGRTALHYLEHYLSVVRPQLLHGKPDTAAELFVTGWGGPMTRERFYEIIVAYGKSAGISK 238

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             T H LRHSFATHLL+NG DLR +Q +LGH  +STTQIYT+++ +     + E+YD+TH
Sbjct: 239 RVTPHMLRHSFATHLLNNGTDLRIVQELLGHADISTTQIYTHLDVER----LREVYDKTH 294

Query: 319 P 319
           P
Sbjct: 295 P 295


>gi|282856243|ref|ZP_06265526.1| tyrosine recombinase XerC [Pyramidobacter piscolens W5455]
 gi|282586002|gb|EFB91287.1| tyrosine recombinase XerC [Pyramidobacter piscolens W5455]
          Length = 290

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 148/308 (48%), Gaps = 26/308 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L+ L   +  S+ T+ +Y  D  QF  F+       + I T        IRAF+    
Sbjct: 7   SFLEYLRNNKASSENTVTNYAVDLAQFADFVENQETGPLEITT------PLIRAFLRSLA 60

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                + S+ R LS +K+F  YL ++ +       ++R+ +    LPRAL+        D
Sbjct: 61  GFGYANSSIARKLSAVKAFELYLLEKGLIAADPAASIRSPRLPERLPRALSR-------D 113

Query: 140 NV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            +  L+  + + K    RN  IL ++YGCG+R++E +SL   ++  D+  L+++GKGDK 
Sbjct: 114 GIERLIQEAWKIKPC-LRNGTILEVMYGCGVRVAELVSLRWDDVDVDERWLKVRGKGDKE 172

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VP     ++A+  +   C  +        LF G  G  +      R + Q  R  GL 
Sbjct: 173 RLVPFGRYAKEALTRWKAECLPEPGF-----LFPGKGGAAITVRTVHRLVVQAARNAGLE 227

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + T H++RHSFATH+L  G  L  +Q +LGH  L TTQ Y  V   +    + + Y   
Sbjct: 228 -NVTPHSVRHSFATHMLEGGASLNVLQELLGHESLLTTQRYLKVTPGH----LRDSYMAA 282

Query: 318 HPSITQKD 325
           HP   +++
Sbjct: 283 HPRSGEEE 290


>gi|58040221|ref|YP_192185.1| integrase/recombinase XerD [Gluconobacter oxydans 621H]
 gi|58002635|gb|AAW61529.1| Integrase/recombinase XerD [Gluconobacter oxydans 621H]
          Length = 311

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/288 (32%), Positives = 145/288 (50%), Gaps = 16/288 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L  ERG +  T Q+Y  D   F    A      +++   R     E+R+++++ 
Sbjct: 15  EAFLEMLAAERGAALKTRQAYASDLADFATHCA-----PLSLSEARG---EEVRSYLAEL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +  R+  R LS ++ F ++L    +  +      +  + ++SLPR L+E +   L+
Sbjct: 67  SRAGLAARTAARRLSCLRQFYRFLMLESVREDDPTERQQAPRITSSLPRPLDEDEIRLLL 126

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +       HE +  D  + A L LLY  GLRISE L+L    +      L ++GKG + R
Sbjct: 127 ETGT--RGHENERRDIVSRAALELLYTTGLRISELLALPATCVHVRGPMLLVRGKGGRER 184

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGL- 256
           +VPL  S R A  +   L  FD +L     LF G    K L    F + +       GL 
Sbjct: 185 LVPLSQSARDAADQ---LVHFDRDLGSPW-LFPGRDPQKHLTRQGFDKILLACALKAGLD 240

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           P   + H LRHSFA+HLL++G DLR++Q +LGH  ++TTQIYT V S+
Sbjct: 241 PDRVSPHVLRHSFASHLLAHGADLRALQMLLGHADIATTQIYTQVMSE 288


>gi|117619677|ref|YP_855009.1| tyrosine recombinase XerC [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117561084|gb|ABK38032.1| tyrosine recombinase XerC [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 325

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 151/305 (49%), Gaps = 19/305 (6%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E   +++ L +ER LS  T  +Y+         L      K+ +    +L  +++R+ ++
Sbjct: 26  ELAGFIEYLRVERQLSPHTRSNYQAHLEAMTAELV-----KLGVDDWARLEASQVRSLVT 80

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           +     +  RSL   +S ++SF  +  ++     +    +   K+   LP+ L+      
Sbjct: 81  RMHKAGLAPRSLATKVSALRSFCDWQVRQGRLVANPARGIVTPKQGRPLPKNLD------ 134

Query: 137 LVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
            VD +  LL+ + E   +  R+ AI+ L+Y  GLR++E + L   ++  D+  LR+ GKG
Sbjct: 135 -VDEMYQLLNITDEQDPLAVRDRAIMELMYSSGLRLAELVGLNLADVKLDERQLRVTGKG 193

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            + R++P+     + + ++  L P      ++  LF   R + L+    Q  +       
Sbjct: 194 SRERVLPVGRMAVEWLHKWLKLRPLLAGDELE-ALFVSKRKQRLSARSVQERLDGWGNKQ 252

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            L      H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++    + ++Y
Sbjct: 253 ALNAHVHPHKLRHSFATHMLESSGDLRAVQELLGHADLSTTQIYTHLDFQH----LAKVY 308

Query: 315 DQTHP 319
           D  HP
Sbjct: 309 DSAHP 313


>gi|311068135|ref|YP_003973058.1| site-specific tyrosine recombinase XerC [Bacillus atrophaeus 1942]
 gi|310868652|gb|ADP32127.1| site-specific tyrosine recombinase XerC [Bacillus atrophaeus 1942]
          Length = 304

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 150/306 (49%), Gaps = 25/306 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +++ L+IE+  S+ T+ +Y     +F  FL         I    + +Y + R F+++   
Sbjct: 11  FVEYLQIEKNYSQYTIVNYVDSIEEFETFLRVQR-----INGFEEAAYHDTRIFLTEAYE 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ--ALTLV 138
           + +  R++ + +S ++SF K+L + K+  E+    +   K+   +P+ L +K+   L  V
Sbjct: 66  KGLSRRTISKKISALRSFYKFLMREKLVEENPFQLVHLPKQEKRIPKFLYQKELEELFAV 125

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            +  L T         R+ A+L LLY  G+R+SE  SLT   +     T+ + GKG K R
Sbjct: 126 SDTSLPTGQ-------RDQALLELLYATGMRVSECSSLTVNGVDLFMDTVLVHGKGKKQR 178

Query: 199 IVPLLPSVRKAILEYYDLCP---FDLNLNIQLPLFRGIRGKPLNP-GVFQRYI-RQLRRY 253
            +P      +A+  Y +       +        LF   RG PL   GV  RYI   L + 
Sbjct: 179 YIPFGSYAHEALELYVNSGRQRLLEKAKESHDVLFVNQRGGPLTVRGV--RYILSGLVKK 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
               L    H LRH+FATHLL+ G DLRS+Q +LGH  LS+TQIYT+V+     + +   
Sbjct: 237 ASGTLHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSK----EMLRNT 292

Query: 314 YDQTHP 319
           Y   HP
Sbjct: 293 YMSHHP 298


>gi|226951750|ref|ZP_03822214.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244]
 gi|226837540|gb|EEH69923.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244]
          Length = 306

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 127/234 (54%), Gaps = 9/234 (3%)

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           RS+ R LS ++ F K+L+++K+  ++ + +  + K   +LP+ L+E+    L++   + T
Sbjct: 80  RSIARCLSALRQFYKFLREQKLREDNPVASHHSPKIGRALPKDLSEQDVEALINAPDIST 139

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           +     +  R+ A+  +LY CGLR+SE L+L  + I   Q  +RI GKG+K R+VPL   
Sbjct: 140 T-----LGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGFVRITGKGNKERLVPLGQY 194

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
               I +Y       L  +    LF    G  ++   F   I++      +    + HTL
Sbjct: 195 ACDWIEKYLAESRPQLYKSNTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAELSPHTL 254

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           RH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        M  ++ Q HP
Sbjct: 255 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQHR----MQALHHQYHP 304


>gi|56414990|ref|YP_152065.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363919|ref|YP_002143556.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56129247|gb|AAV78753.1| site-specific integrase/recombinase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095396|emb|CAR60955.1| site-specific integrase/recombinase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 298

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 154/304 (50%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER L++ TL +Y  D    + +L    +   T Q        +++  +++R
Sbjct: 9   EQFLDALWLERDLAENTLSAYRRDLSMVVAWLHHRGKTLATAQA------DDLQTLLAER 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++ F ++L + K   +     + + K    LP+ L+E Q   L+
Sbjct: 63  VEGGYKATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEVQVERLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG+K R
Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL       +  Y +   P+ LN ++I + LF   R + +    F   I+      G+
Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292

Query: 316 QTHP 319
           Q HP
Sbjct: 293 QHHP 296


>gi|238763216|ref|ZP_04624181.1| Tyrosine recombinase xerD [Yersinia kristensenii ATCC 33638]
 gi|238698489|gb|EEP91241.1| Tyrosine recombinase xerD [Yersinia kristensenii ATCC 33638]
          Length = 299

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 153/303 (50%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER L++ TL SY  D      +L  +  + +   +       ++++F+++R
Sbjct: 10  EQFLDALWLERNLAENTLASYRLDLHALSGWLEHHDSDLLRAGS------QDLQSFLAER 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q     
Sbjct: 64  IEGGYKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQV---- 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            + LL++ +    ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K R
Sbjct: 120 -DALLNSPNVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKER 178

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       I  Y +   P+ +N      LF   R + +    F   I+      G+ 
Sbjct: 179 LVPLGEEAVYWIENYMEHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGID 238

Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  ++ Q
Sbjct: 239 SERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKLLHQQ 294

Query: 317 THP 319
            HP
Sbjct: 295 HHP 297


>gi|312883960|ref|ZP_07743677.1| site-specific tyrosine recombinase XerD [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368418|gb|EFP95953.1| site-specific tyrosine recombinase XerD [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 302

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 153/303 (50%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + +ERGLS+ TL SY  D  + L ++ F    ++       +S + ++ F S  
Sbjct: 13  EQFLDAMWMERGLSENTLSSYRNDLFKLLKWM-FENNYRLNF-----ISISGLQDFQSWL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S  R LS ++   +Y+ + ++ ++     + + K    LP+ L+E+Q     
Sbjct: 67  VDEGYKQTSRARMLSALRRLFQYMHRERLRSDDPSALLVSPKLPKRLPKDLSEQQV---- 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            + LL        I+ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG K R
Sbjct: 123 -DALLSAPDANNPIELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVTGKGGKER 181

Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+     + I  +      +L        +F   R K +    F   I+      G+ 
Sbjct: 182 LVPMGEDAIEWIETFLHQGRSELLGEKTSDVVFPSKRAKQMTRQTFWHRIKYYAMLAGID 241

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ +
Sbjct: 242 SELLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHSE 297

Query: 317 THP 319
            HP
Sbjct: 298 HHP 300


>gi|251793385|ref|YP_003008113.1| site-specific tyrosine recombinase XerC [Aggregatibacter
           aphrophilus NJ8700]
 gi|247534780|gb|ACS98026.1| tyrosine recombinase XerC [Aggregatibacter aphrophilus NJ8700]
          Length = 295

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 104/318 (32%), Positives = 160/318 (50%), Gaps = 37/318 (11%)

Query: 19  QNWLQN----LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           QN LQ     L+IER +S  TL +Y+   RQ +  +     +   IQ  +Q++ + +R  
Sbjct: 2   QNALQKYWTYLKIERQVSPHTLSNYQ---RQLVRIVEIL--QHAGIQQWQQVTPSVVRFV 56

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I++     + ++SL   LS ++ FL YL +      +    +   K++  LP+ ++ +Q 
Sbjct: 57  IAQSHKDGLHEKSLALRLSALRRFLSYLVQLGELKVNPATGISAPKQAKHLPKNIDTEQ- 115

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
              V  +L + S E   ID R+ AI+ LLY  GLR+SE   L   +I      +R+ GKG
Sbjct: 116 ---VQQLLANDSKEP--IDIRDRAIIELLYSSGLRLSELQGLNLNSINIRVREVRVIGKG 170

Query: 195 DKIRIVPLLPSVRKAILEYYDL----CPFDLNLNI-QLP---LFRGIRGKPLNPGVFQRY 246
           +K R+VPL      AI ++  +     P D  L + QL      R I+ +    G+ QR 
Sbjct: 171 NKERVVPLGRYASHAIQQWLKVRLLFNPKDEALFVSQLGNRMSHRAIQMRLETWGIRQRL 230

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
              L            H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++ 
Sbjct: 231 NSHL----------NPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH- 279

Query: 307 GDWMMEIYDQTHPSITQK 324
              + E+YD  HP   +K
Sbjct: 280 ---LAEVYDSAHPRAKRK 294


>gi|242280626|ref|YP_002992755.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
 gi|242123520|gb|ACS81216.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
          Length = 307

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 155/311 (49%), Gaps = 26/311 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
             +L +  IER LS+LT+++Y+ D  QF  F+   T+   +I  I +    +   FIS  
Sbjct: 8   HTFLNHCIIERNLSELTMKAYQKDLLQFKHFIPDSTD---SIHDINKFILRDYIKFIS-- 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTL 137
              +   RS+KR ++ +KSF  ++++  I   S    +   + +S  LP+ +++      
Sbjct: 63  --NQYKPRSIKRKIATLKSFFNFMERDDIIETSPFRKIHLKIDRSKILPKTISKSS---- 116

Query: 138 VDNVLLHTSHETKWID---------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++N+L +T  E               R+ AI+  L+  G+R+SE   +T  ++      +
Sbjct: 117 INNLLKYTYTERAKYQLSGRGYREATRDIAIIETLFMTGIRVSELCQITTSSMDLINEQI 176

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           +I GKG K R++P+  +    IL  Y+    D +L    P F     +P++    +R IR
Sbjct: 177 KITGKGKKERVIPICANNALLILREYETLYRD-HLLPDSPFFLNRDKRPISDQSVRRIIR 235

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     G+P   T H  RH+ AT LL NG D+R+IQ++LGH  LS T+IYT+V+  +   
Sbjct: 236 KYCSMCGIPEHVTPHMFRHTIATMLLENGVDIRNIQTLLGHSSLSVTEIYTHVSLSSQR- 294

Query: 309 WMMEIYDQTHP 319
              EI    HP
Sbjct: 295 ---EILSMKHP 302


>gi|15838026|ref|NP_298714.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa 9a5c]
 gi|34223080|sp|Q9PDF4|XERD_XYLFA RecName: Full=Tyrosine recombinase xerD
 gi|9106440|gb|AAF84234.1|AE003973_2 integrase/recombinase [Xylella fastidiosa 9a5c]
          Length = 324

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 98/309 (31%), Positives = 154/309 (49%), Gaps = 24/309 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L I+ GLS+ TL SY  D    L  LA +   +     +  L+   +  +++ R 
Sbjct: 29  HFLDALWIKHGLSQHTLNSYRRD----LEGLARWNNGRAG--PLATLTPPALLDYLTWRT 82

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q     S  R LS +++F  Y  +     ++    + +    + LP+AL E Q    ++
Sbjct: 83  QQHYSPLSNARLLSVLRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQ----IE 138

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            +L   S ET     RN A+L L+Y  GLR+SE ++L    +   Q  LRI GKG K R+
Sbjct: 139 ALLAAPSIETP-EGLRNRAMLELMYAAGLRVSELVTLPVAMLNRRQGVLRIIGKGGKERL 197

Query: 200 VPLLPSVRKAILEYYDLC--------PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           VPL    +  +  Y +          P   + +  +PLF     K L+   F R+I+   
Sbjct: 198 VPLGEESQHWLQRYLEQARPSLAADKPIPADSDGDVPLFINTTLKRLSRQQFWRWIKHYA 257

Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              G+ P   + H LRHSFATHLL++G DLR++Q +LGH  +STTQIYT +  ++    +
Sbjct: 258 ALAGIAPNKVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTFIARQH----L 313

Query: 311 MEIYDQTHP 319
            +++ Q HP
Sbjct: 314 QQLHAQHHP 322


>gi|322515579|ref|ZP_08068560.1| tyrosine recombinase XerC [Actinobacillus ureae ATCC 25976]
 gi|322118382|gb|EFX90648.1| tyrosine recombinase XerC [Actinobacillus ureae ATCC 25976]
          Length = 331

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 160/307 (52%), Gaps = 25/307 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L IE+  S  TL +Y+   RQ L     +++  I     ++++   +R  +++   Q + 
Sbjct: 45  LRIEKQASPHTLSNYQ---RQLLAVSEMFSQAGIG--AWQEVNVAAVRWMLTQSHKQGLS 99

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            +S+   L  ++ +  YL +++  T +  L +++ K    LP+ ++ +Q   L++     
Sbjct: 100 AKSIGLRLVALRQWFNYLVQQEQMTVNPALGIKSPKVGKHLPKNIDAEQIGQLLN----- 154

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            +  ++ ++ R+ A++ L+Y  GLR+SE   L   ++  +   +++ GKG+K RI+P+  
Sbjct: 155 -TETSEPLELRDLAMMELMYSSGLRLSELQGLDLGDMDLNAREVKVLGKGNKERILPIGT 213

Query: 205 SVRKAILEY----YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
              +A+  +    +D  P D        LF   RG  L+    Q  +++  +  GL    
Sbjct: 214 KALQALQAWLGGRHDFNPQDN------ALFLNKRGGRLSHRSIQLAMQKWGKKQGLETHL 267

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
             H LRHSFATH+L   GDLR++Q +LGH  LSTTQIYT+++ ++    + +IYD  HP 
Sbjct: 268 HPHKLRHSFATHMLEASGDLRAVQELLGHSSLSTTQIYTSLDFQH----LAQIYDAAHPR 323

Query: 321 ITQKDKK 327
             +K ++
Sbjct: 324 ARRKKEE 330


>gi|62184944|ref|YP_219729.1| site-specific tyrosine recombinase XerC [Chlamydophila abortus
           S26/3]
 gi|81312884|sp|Q5L6G3|XERC_CHLAB RecName: Full=Tyrosine recombinase xerC
 gi|62148011|emb|CAH63762.1| putative integrase/recombinase [Chlamydophila abortus S26/3]
          Length = 312

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 155/314 (49%), Gaps = 27/314 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE----EKITIQTIRQ---------L 66
           ++L+N+   +  S  TL++Y  D   F  FL  + E      I + T  +         L
Sbjct: 10  DYLKNI---KTASPHTLRNYCIDLNSFKTFLEKHGELTPSPPICLLTKERQEAELPFSLL 66

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           +   +R +I K   +    R++KR LS IKSF +Y  K++I  +     ++  +    LP
Sbjct: 67  TKDTVRLYILKLMQENKAKRTIKRRLSAIKSFSQYCVKQRILPDDPTETIQGPRLPKELP 126

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             +  +Q       +L+ T   +K+   R+  +L L Y  GLRISE +++   +I     
Sbjct: 127 SPITYEQV-----EILMATPDLSKYTGLRDRCLLELFYSSGLRISEIVAINHWDIDFTSH 181

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQR 245
            +RI+GKG K R+VP+ P   +  L++Y   P   ++      +F    GK L      R
Sbjct: 182 LIRIRGKGKKERLVPITPHAAQW-LQHYLTHPARTSIEKDAQAIFLNRFGKRLTTRSIDR 240

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             ++  R  GL    T HT+RH+ ATH L NG DL++IQ++LGH  L TT IYT+V+ K 
Sbjct: 241 KFQKYLRQSGLSGHITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMK- 299

Query: 306 GGDWMMEIYDQTHP 319
                 + ++++HP
Sbjct: 300 ---LKKQTHNESHP 310


>gi|317504379|ref|ZP_07962363.1| integrase/recombinase XerD [Prevotella salivae DSM 15606]
 gi|315664501|gb|EFV04184.1| integrase/recombinase XerD [Prevotella salivae DSM 15606]
          Length = 307

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 144/286 (50%), Gaps = 12/286 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L++ER  S  TL +Y  D    + +      + + +Q        +++ F +  
Sbjct: 13  KAYLRYLKLERNYSPNTLDAYSHDIAWLIDYCKREERDLLGLQ------LEDLQHFAASL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               IG RS  R LSGI+SF ++L             + +      LP  L+ ++   L 
Sbjct: 67  HEFHIGPRSQSRILSGIRSFFRFLLLDGYIDNDPTELLESPVLGQHLPEVLSTEEVDRLE 126

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +++ L     +K    RN  I+ +L+ CGLR+SE + L    +  D   +R+ GKG K R
Sbjct: 127 ESIDL-----SKPEGQRNRTIIEVLFSCGLRVSELVHLKLSELYLDDGFIRVLGKGSKER 181

Query: 199 IVPLLP-SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+ P ++++  L + D    D+    +  +F   RG  L   +    I++     G+ 
Sbjct: 182 LVPISPRAIKELRLWFADRVHLDIKPGEEDFVFLNRRGHHLTRTMILIMIKRQAEEAGIK 241

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++
Sbjct: 242 KTISPHTLRHSFATALLQGGADLRAIQAMLGHEHIGTTEIYTHIDT 287


>gi|311278186|ref|YP_003940417.1| tyrosine recombinase XerD [Enterobacter cloacae SCF1]
 gi|308747381|gb|ADO47133.1| tyrosine recombinase XerD [Enterobacter cloacae SCF1]
          Length = 298

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 160/308 (51%), Gaps = 19/308 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L + + +L  L +E+ L++ TL +Y    R   +  A+     ++++T +     +++  
Sbjct: 5   LAQIEQFLDALWLEKNLAENTLSAYR---RDLTMVAAWLQHRGLSLETAQP---GDLQNL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R        S  R LS ++   ++L + KI  +     + + K    LP+ L+E Q 
Sbjct: 59  LAERVDGGYKATSSARLLSAMRRLFQHLYREKIRPDDPSAQLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+   L+        ++ R+ A+L +LY  GLR+SE + L+  +I   Q  +R+ GKG
Sbjct: 119 DRLLQAPLVDQP-----LELRDKAMLEVLYATGLRVSELVGLSMSDISLRQGVVRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           +K R+VPL       +  Y +   P+ LN ++I + LF   R + +    F   I+   R
Sbjct: 174 NKERLVPLGEEAVYWLENYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAR 232

Query: 253 YLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + 
Sbjct: 233 LAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LR 288

Query: 312 EIYDQTHP 319
           +++ Q HP
Sbjct: 289 QLHQQHHP 296


>gi|224282694|ref|ZP_03646016.1| site-specific tyrosine recombinase XerC [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 334

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 154/334 (46%), Gaps = 46/334 (13%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L   RGLS  T+++Y  D R+ L  LA        I  +RQ++  ++R +++   T
Sbjct: 10  FLAYLRANRGLSGNTVKAYGTDVRECLHALA-----SRGIADLRQVTTDDLRGWMAFE-T 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     S+ R +  ++SF  +  +           +   K  ++LP  L E QA  L+D 
Sbjct: 64  RDHARSSMARKVVSVRSFFAWAHEHGRIEADPAAVLMTPKLPDTLPSVLTEAQAERLMDR 123

Query: 141 V----LLHTSHETKW-------------------------IDARNSAILYLLYGCGLRIS 171
           V     LH +   ++                         +  R++A+L LLY  G+R++
Sbjct: 124 VDDDASLHAASSQRYETRHDEMPRLDSAHRGEGMSQRDEVVALRDAAMLELLYATGIRVA 183

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQ---- 226
           E + L   ++     T+R+ GKG K R+VP      KA+  + +   P  L         
Sbjct: 184 ELVGLDIGDVDWSHRTIRVTGKGSKQRVVPFGDPAEKALAGWKEHGRPLILRRAGAGTLD 243

Query: 227 -LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
              LF G+RG+ ++  + +  + +  R  G+P   + H+LRHS ATH+L  G DLR +Q 
Sbjct: 244 TAALFLGMRGRRIDQRIVRDVVHRAARESGVP-DISPHSLRHSAATHMLDGGADLREVQE 302

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           +LGH  L TTQ YT+V+ +     + E Y Q  P
Sbjct: 303 MLGHSSLRTTQRYTHVSIEQ----LKERYRQAFP 332


>gi|320528392|ref|ZP_08029554.1| phage integrase, SAM-like domain protein [Solobacterium moorei
           F0204]
 gi|320131306|gb|EFW23874.1| phage integrase, SAM-like domain protein [Solobacterium moorei
           F0204]
          Length = 308

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 150/305 (49%), Gaps = 20/305 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +  N++I  G SK T+ SY  D +Q++ FL    E+ IT    +++    I  FI+ +  
Sbjct: 10  YFTNIKINEGKSKRTVSSYTNDLKQYMQFL---DEQGIT--NTKKIKPELIEEFIANQSE 64

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            K    SL R  + I+SF +++       + + LN++  K   +LP           VD 
Sbjct: 65  YK-ASTSLARMTAAIRSFHQFMTMMHDEPDPS-LNLQVHKGPKTLP-------IYCTVDE 115

Query: 141 V--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +  L+ +  +T   D  +  +L  +Y CGLR+SE  +LT   +  D   +R+ GKGDK R
Sbjct: 116 IKRLMQSFDDTNIQDNLDHTLLETIYSCGLRVSEICNLTINRVDLDTGRIRVLGKGDKER 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVP+       + +Y  +   +L        F    G+ +     +  +++    L    
Sbjct: 176 IVPIPKGSIPLLKQYISITRVNLIQKKTNIFFLNRFGRKITSKYVELLLQRKCVELDFKK 235

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             T H LRHS+ATH+L  G DLRSIQ ILGH  + TT+IYT+V +K     + + Y++ +
Sbjct: 236 HITPHKLRHSYATHMLQGGADLRSIQEILGHSNIQTTEIYTHVQNK----QLFDAYNKFN 291

Query: 319 PSITQ 323
           P  +Q
Sbjct: 292 PLASQ 296


>gi|34541361|ref|NP_905840.1| integrase/recombinase XerD [Porphyromonas gingivalis W83]
 gi|34397678|gb|AAQ66739.1| integrase/recombinase XerD [Porphyromonas gingivalis W83]
          Length = 308

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/256 (32%), Positives = 133/256 (51%), Gaps = 15/256 (5%)

Query: 51  AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE 110
           ++ T E I+    R++SY  ++ F+++     I  RS+ R +SG+KSF ++L   +    
Sbjct: 37  SYLTAENISF---REVSYENLQHFVAELYDLGISARSIARIISGVKSFFRFLVLEEYIEA 93

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
                +   +    LP  L  ++   L+ ++             RN AIL +LY CGLR+
Sbjct: 94  DPTELLEGPRIGVHLPTVLTIEEVDRLIGSI-----DPAAQGAQRNRAILEILYSCGLRV 148

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD----LCPFDLNLNIQ 226
           SE  SL   N+  ++S LRI GKG K R+VP+  +    +  Y        P    L  +
Sbjct: 149 SELTSLKFSNLFLNESFLRIDGKGRKQRLVPMSETAITELKRYLSDPERPTPV---LGQE 205

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
             +F   RGK ++  +    I++L    G+  S + HT RHSFATHLL  G +L++IQ +
Sbjct: 206 EYVFLSNRGKAISRIMVFVMIKKLAEEAGITKSISPHTFRHSFATHLLEGGANLQAIQLM 265

Query: 287 LGHFRLSTTQIYTNVN 302
           LGH  ++TT+IYT+++
Sbjct: 266 LGHENIATTEIYTHID 281


>gi|315618491|gb|EFU99077.1| tyrosine recombinase XerC [Escherichia coli 3431]
          Length = 282

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 146/293 (49%), Gaps = 17/293 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +ER LS +TL +Y+   RQ    + F +E    +Q+ +Q   T +R F  + R + +G  
Sbjct: 1   MERQLSPITLLNYQ---RQLEAIINFASEN--GLQSWQQCDVTMVRNFAVRSRRKGLGAA 55

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           SL   LS ++SF  +L  +     +    +   K    LP+ ++      L+D  +    
Sbjct: 56  SLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI---- 111

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                +  R+ A+L ++YG GLR+SE + L  +++  +   + + GKG K R +P+  + 
Sbjct: 112 --NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 169

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              I  + DL   DL  +    LF    GK ++    Q+   +     GL      H LR
Sbjct: 170 VAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 227

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  +YD  HP
Sbjct: 228 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 276


>gi|294791028|ref|ZP_06756186.1| tyrosine recombinase XerD [Scardovia inopinata F0304]
 gi|294458925|gb|EFG27278.1| tyrosine recombinase XerD [Scardovia inopinata F0304]
          Length = 318

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 154/323 (47%), Gaps = 20/323 (6%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           + N LPE  S  L      +L  + +ERGL+  T+++YE D    + ++++ T +K+T  
Sbjct: 8   DSNGLPEAYSTSL----SLFLGYISVERGLAAATVKAYESD---LIKYVSWLTHKKVTDP 60

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
              Q+S   +  F++         +S+ R L+ I  + +YL  R          ++  K 
Sbjct: 61  G--QISQQNVEDFVASLSLAGESQKSIARRLASIHEYHRYLSSRGQIQTDVSQTVKPPKA 118

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           +  LP  L   +   +++  +  T  +T  +  R+ A+L  LY  G R+SEA+ L   ++
Sbjct: 119 AAHLPDVLTIDEVSRMME--MTSTERDTDPVILRDRALLEFLYATGARVSEAVGLNMTDL 176

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGI----RGK 236
             D    R+ GKG K R+VPL      A+  Y +    +  +     P  R +    RGK
Sbjct: 177 DLDSRCARLMGKGSKQRLVPLGSYACSALNRYLHGPRQYLQDKARSGPELRAVFLNKRGK 236

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L+       ++       +      HTLRHS ATHL+  G D+R++Q +LGH  ++TTQ
Sbjct: 237 RLSRQSVWEIVQAAANRAHISKEVHPHTLRHSCATHLIRGGADVRTVQELLGHASVTTTQ 296

Query: 297 IYTNVNSKNGGDWMMEIYDQTHP 319
           +YT+++ +     ++E Y   HP
Sbjct: 297 LYTHISPQT----LIETYITAHP 315


>gi|221194870|ref|ZP_03567927.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626]
 gi|221185774|gb|EEE18164.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626]
          Length = 313

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 147/309 (47%), Gaps = 24/309 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            ++  L   R LS  T ++Y  D   ++ +     EE   +Q     ++  +RA++S   
Sbjct: 16  EFIAYLRTVRNLSDNTTRAYSVDLASYISWCK--REELDPLQA----THRSLRAYLSYLD 69

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
             +   R+L R LS ++ F K+L K K       L + + + S  LP+ ++++     V 
Sbjct: 70  QARYSARTLNRHLSALRGFYKWLNKEKYLEVDPSLILTSPRTSRRLPQTMSDED----VQ 125

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            +LL    +T  +  R+ AIL  +Y  G RISE   L  +++   Q  +R+ GKG K R 
Sbjct: 126 KLLLSCDTDTA-VGLRDRAILECMYATGARISEISHLDREDVDMSQGVVRLFGKGSKERD 184

Query: 200 VPLLPSVRKAILEYYDLCPFDL---------NLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           VPL  + R  +  Y       L         N   +  LF  IRG  ++  V ++     
Sbjct: 185 VPLYKTARDWLEAYMYGARSQLIGKGRKSLRNPREEKALFVSIRGHRMSADVLRKMFETY 244

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  GL    T H +RH+FAT LLS G DLR +Q +LGH  LSTTQIYT+++ +     +
Sbjct: 245 VKKAGLDPMLTPHAMRHTFATELLSGGADLRVVQELLGHQSLSTTQIYTHLSIER----L 300

Query: 311 MEIYDQTHP 319
            +   Q HP
Sbjct: 301 KDAAKQAHP 309


>gi|169634632|ref|YP_001708368.1| site-specific tyrosine recombinase [Acinetobacter baumannii SDF]
 gi|169153424|emb|CAP02561.1| site-specific tyrosine recombinase [Acinetobacter baumannii]
          Length = 306

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/240 (33%), Positives = 130/240 (54%), Gaps = 11/240 (4%)

Query: 82  KIGD--RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           K+G   RS+ R LS ++ F K L+++K+ +++ +    + K   +LP+ L+E+    L+ 
Sbjct: 74  KVGKSPRSIARCLSALRQFYKSLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQ 133

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              + T+     +  R+ A+  +LY CGLR+SE L+L  + I   Q  LRI GKG+K R+
Sbjct: 134 APDITTA-----LGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERL 188

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPL       +  Y +     L  +    LF    G  ++   F   I++      +   
Sbjct: 189 VPLGQYACDWVERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAE 248

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        M +++++ HP
Sbjct: 249 LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR----MQQLHEKHHP 304


>gi|239813909|ref|YP_002942819.1| integrase family protein [Variovorax paradoxus S110]
 gi|239800486|gb|ACS17553.1| integrase family protein [Variovorax paradoxus S110]
          Length = 356

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 152/314 (48%), Gaps = 28/314 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+++ +ER L+  T++ Y    +      A        +QT        IR ++++   
Sbjct: 16  YLEHVRVERRLAARTVELYAIHLQALAANAAEAGLPLDRVQT------AHIRRWMAQLHG 69

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                R +   LS  +SF ++L    +   + + ++   K +  LP+AL    A+ L + 
Sbjct: 70  AGREPRGIALVLSCWRSFYRWLGNEGLVGFNPVKDVHAPKAARPLPKALAVDDAVRLAE- 128

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL------TPQNIMD-DQSTLRIQGK 193
             L+      W +AR+ AI+ +LYGCGLR+SE   L      T +  +D D     + GK
Sbjct: 129 --LYDPEADPWTEARDGAIVEVLYGCGLRVSELTGLDARASNTARGWVDLDALEANVLGK 186

Query: 194 GDKIRIVPLLPSVRKAILEYYDL---CPFDLNLNIQLP-----LFRGIRGKPLNPGVFQR 245
           G K RIVP+     +A+ +++ +   C       ++ P     LF   +G  ++     +
Sbjct: 187 GSKRRIVPIGSKAAEALRDWFAVRGECAALSTAALRDPAGAAALFISAKGVRMSSQAVWK 246

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +R+     GL      H LRHSFA+H+L +  DLR++Q +LGH  ++TTQ+YT ++ ++
Sbjct: 247 LLRERSLKAGLAAPVHPHMLRHSFASHVLQSSSDLRAVQELLGHANIATTQVYTRLDFQH 306

Query: 306 GGDWMMEIYDQTHP 319
               + ++YD  HP
Sbjct: 307 ----LAKVYDAAHP 316


>gi|237807746|ref|YP_002892186.1| tyrosine recombinase XerD [Tolumonas auensis DSM 9187]
 gi|237500007|gb|ACQ92600.1| tyrosine recombinase XerD [Tolumonas auensis DSM 9187]
          Length = 297

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 149/303 (49%), Gaps = 18/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L ++RGLS  T+ SY  D  +   +L       +T+ T+       + A+++ R
Sbjct: 9   EQFLDMLWLDRGLSDNTISSYRTDLYKLNDWLDSKASSYLTLDTLL------LHAYLAWR 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R LS ++ F ++L + ++  +   + + + K    LP+ ++E+Q     
Sbjct: 63  IDQGFKATSTARLLSALRRFYQFLIREQLRADDPTVALDSPKLPLRLPKDISEEQV---- 118

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL        I+ R+ A+L LLY  GLR+SE + L    +  + + +R+ GKG+K R
Sbjct: 119 -EALLAEPDVQDPIELRDKAMLELLYATGLRVSELVGLQMHQLASNMAYVRVTGKGNKDR 177

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VP     +  I  +       L L+ Q    LF   R + +    F   I+       +
Sbjct: 178 LVPTGEEAQYWIQRFMREGRMTL-LHEQASDVLFPSNRSQQMTRQTFWHRIKLYAVRANI 236

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ +
Sbjct: 237 TSDLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQAR----LQELHQE 292

Query: 317 THP 319
            HP
Sbjct: 293 HHP 295


>gi|62182418|ref|YP_218835.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62130051|gb|AAX67754.1| putative integrase/recombinase, site-specific [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322716911|gb|EFZ08482.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 300

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 153/311 (49%), Gaps = 17/311 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +    L ++   +L+ L +ER LS +TL +Y+   RQ    +A   E    +++ +Q   
Sbjct: 1   MTDVALSQDVSRFLRYLGVERQLSPITLLNYQ---RQLDAIIALAGEA--GLKSWQQCDA 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R+F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ 
Sbjct: 56  AIVRSFAVRSRRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKN 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++      L+D  L         +  R+ A+L ++YG GLR+SE + L  +++  D   +
Sbjct: 116 IDVDDVNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEV 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +P+  +    I  + DL    L  + +  LF    GK ++    Q+   
Sbjct: 170 WVMGKGSKERRLPIGRNAVTWIEHWLDLR--GLFASDEEALFLSKLGKRISARNVQKRFA 227

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++   
Sbjct: 228 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 284

Query: 309 WMMEIYDQTHP 319
            +  +YD  HP
Sbjct: 285 -LASVYDAAHP 294


>gi|16767219|ref|NP_462834.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167553868|ref|ZP_02347612.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167993887|ref|ZP_02574980.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168233881|ref|ZP_02658939.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168822681|ref|ZP_02834681.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194470289|ref|ZP_03076273.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197251815|ref|YP_002148873.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|224585764|ref|YP_002639563.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238912952|ref|ZP_04656789.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|2497413|sp|P55888|XERC_SALTY RecName: Full=Tyrosine recombinase xerC
 gi|1916339|gb|AAC45778.1| site-specific recombinase [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|6960253|gb|AAF33443.1| S. typhimurium site-specific recombinase (XERC) (SP:P55888);
           contains similarity to Pfam family PF00589 ('Phage'
           integrase family), score=227.1, E=2.5e-64, N=1
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|16422513|gb|AAL22793.1| putative site-specific integrase/recombinase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|194456653|gb|EDX45492.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197215518|gb|ACH52915.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|205321790|gb|EDZ09629.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205328137|gb|EDZ14901.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205332099|gb|EDZ18863.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205340961|gb|EDZ27725.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|224470292|gb|ACN48122.1| tyrosine recombinase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261249072|emb|CBG26933.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267996228|gb|ACY91113.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160464|emb|CBW19994.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312915067|dbj|BAJ39041.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320088359|emb|CBY98119.1| Tyrosine recombinase xerC [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321225467|gb|EFX50524.1| Tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323132296|gb|ADX19726.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332990784|gb|AEF09767.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 300

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 153/311 (49%), Gaps = 17/311 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +    L ++   +L+ L +ER LS +TL +Y+   RQ    +A   E    +++ +Q   
Sbjct: 1   MTDVALSQDVSRFLRYLGVERQLSPITLLNYQ---RQLDAIIALAGE--TGLKSWQQCDA 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R+F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ 
Sbjct: 56  AIVRSFAVRSRRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKN 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++      L+D  L         +  R+ A+L ++YG GLR+SE + L  +++  D   +
Sbjct: 116 IDVDDVNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEV 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +P+  +    I  + DL    L  + +  LF    GK ++    Q+   
Sbjct: 170 WVMGKGSKERRLPIGRNAVTWIEHWLDLR--GLFASDEEALFLSKLGKRISARNVQKRFA 227

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++   
Sbjct: 228 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 284

Query: 309 WMMEIYDQTHP 319
            +  +YD  HP
Sbjct: 285 -LASVYDAAHP 294


>gi|291287439|ref|YP_003504255.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290884599|gb|ADD68299.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 295

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 145/290 (50%), Gaps = 18/290 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L+    NW+Q    E GL++ ++++Y  D   ++ F         T++ + +    E+ 
Sbjct: 5   KLVSNFTNWMQ---YEMGLAENSVKAYHQDIENYIAF---------TLKPLVECGAQELV 52

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           A+++  R       +++R +SGI  F  +L   KI + + +  +    K   LP  LN  
Sbjct: 53  AYMTHLRKSGASIETVQRRISGISRFYDFLIMEKIISSNPVGFVSKPSKWEKLPVFLNFD 112

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L+++  + +      +  R+  I   +Y  G+RISE + L   ++   +  +++ G
Sbjct: 113 EVEKLINSPDMSSG-----LGYRDRIIFETMYSTGMRISELVGLKVLDMDMHREIMKVTG 167

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG K R VP+  S+ + +  Y D+    L     +  LF    GK L+       I++  
Sbjct: 168 KGSKQRFVPMYGSLAEKMKTYLDIRHDSLVKERDEGWLFLSRNGKKLDREYVWMIIKKYC 227

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              G+  + + HTLRHSFATHLL+NG DLR+IQ +LGH  LSTT+ YT V
Sbjct: 228 ERAGIKKNVSPHTLRHSFATHLLTNGADLRTIQVLLGHVDLSTTERYTQV 277


>gi|270290225|ref|ZP_06196450.1| tyrosine recombinase XerC [Pediococcus acidilactici 7_4]
 gi|304384961|ref|ZP_07367307.1| tyrosine recombinase XerC [Pediococcus acidilactici DSM 20284]
 gi|270281006|gb|EFA26839.1| tyrosine recombinase XerC [Pediococcus acidilactici 7_4]
 gi|304329155|gb|EFL96375.1| tyrosine recombinase XerC [Pediococcus acidilactici DSM 20284]
          Length = 301

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 145/289 (50%), Gaps = 15/289 (5%)

Query: 20  NWLQN----LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +W++     L +ER  S  T+ +Y  D ++F  FL   T  K  +  + +    +   F+
Sbjct: 2   DWIEQFKRYLTVERQYSDKTVTAYLEDLQEFQKFLQ-TTGNKPELLAVDRF---DANVFM 57

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           S    Q +   S+ R +S +++F ++L K  +  ++    ++  K ++ LPR   EK+  
Sbjct: 58  SYLFDQNLKRTSISRKVSSLRAFYRFLIKNDVIAKNPFEFVQLKKHADHLPRFFYEKEMN 117

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L D V      +   +  RN+A+L +LYG G+R+SE  +L   +I     T+ + GKG+
Sbjct: 118 QLFDTVY----QDQGPLHLRNAALLEVLYGTGMRVSECTNLRWTDIDFSMQTILVLGKGN 173

Query: 196 KIRIVPLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K R VP     + A+ +Y+        +        +F    G+P+     +  + Q+ +
Sbjct: 174 KERYVPFGRYAKHALEDYHQNEWTSLLEKYHQTHQYVFVNHYGQPITVAGVEYVLNQIIK 233

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              L      H LRHSFAT +L+NG DLR++Q +LGH  LSTTQIYT+V
Sbjct: 234 NSSLNGKIHPHMLRHSFATAMLNNGADLRTVQELLGHASLSTTQIYTHV 282


>gi|189501600|ref|YP_001957317.1| integrase family protein [Candidatus Amoebophilus asiaticus 5a2]
 gi|189497041|gb|ACE05588.1| integrase family protein [Candidatus Amoebophilus asiaticus 5a2]
          Length = 292

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 147/301 (48%), Gaps = 13/301 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N++  L  E+ LS  T+ +Y+ D  Q   +L    +    I  +   +   +R++I + 
Sbjct: 3   ENFINFLTYEKRLSSHTICAYQTDLNQLFSYL----QTNFQIAELSHATSKLLRSWIMEL 58

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q + +RS+ R ++ +K+F  +L K++         +  LK    LP  L E++ L L+
Sbjct: 59  AKQGLNNRSINRKIASLKAFYGFLYKKEYIPSDITTQLTGLKVKKGLPIFLREQELLHLL 118

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D        E  W   R   IL LLY  G+R+ E ++L  ++I     T+R+ GK +K R
Sbjct: 119 DEHPFTDDFE-GW---RARLILELLYSTGIRLQELINLQDRDINFYDRTIRVLGKRNKER 174

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           I+PL P     I+E Y      +  N     F     KP  P +  + ++          
Sbjct: 175 ILPL-PKHILPIIEGYLQQRNTIIANAPAHFFVTTNNKPCYPMLIYKLVKSYLASYTQAD 233

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FATHLL+ G DL++I+ +LGH  L+ TQ+YT+    N  + + EI+ Q H
Sbjct: 234 RHSPHILRHTFATHLLNRGADLQAIKELLGHTSLAATQVYTH----NSMEKLKEIFLQAH 289

Query: 319 P 319
           P
Sbjct: 290 P 290


>gi|260893180|ref|YP_003239277.1| tyrosine recombinase XerD [Ammonifex degensii KC4]
 gi|260865321|gb|ACX52427.1| tyrosine recombinase XerD [Ammonifex degensii KC4]
          Length = 302

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 148/308 (48%), Gaps = 26/308 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L +ERGL+  T+ +Y  D + F  F+A   +  +   ++R         ++ + 
Sbjct: 7   EEFLEFLRVERGLADNTIAAYRTDLKHFCAFVA-RRQFSLDPSSLRDACL----CYLYEL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL------NMRNLKKSNSLPRALNEK 132
                   ++ R L+ +KSF  YL      T++  L       + + K    LP+ L  +
Sbjct: 62  NAAGYLASTVARRLAALKSFCAYL-----ATQAGYLPWDPAEELSSPKIPERLPKVLRPE 116

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L+     +T         R+ A+L L Y  G+R+SE + L   ++  +   +R+ G
Sbjct: 117 EVERLLTAPRTNTPQ-----GLRDRALLELAYATGMRVSELVGLDVDHLNLEAGYVRVLG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG K RIVP+    +  + EY +   P  +       LF   RG  L      + ++   
Sbjct: 172 KGGKERIVPVGRVAQHYLREYLEKAWPRLVKDRRTSALFVNRRGGRLTRQAVFKLLKDYA 231

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R  GL  + + HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT++ S      + 
Sbjct: 232 RQAGLTSAPSPHTLRHSFATHLLENGADLRVVQELLGHVSISTTQIYTHLTSTR----VR 287

Query: 312 EIYDQTHP 319
           E+Y + HP
Sbjct: 288 EVYRRAHP 295


>gi|260655111|ref|ZP_05860599.1| integrase/recombinase XerD [Jonquetella anthropi E3_33 E1]
 gi|260630222|gb|EEX48416.1| integrase/recombinase XerD [Jonquetella anthropi E3_33 E1]
          Length = 319

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 141/317 (44%), Gaps = 20/317 (6%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + +F+L      ++  + + +  S  T  +Y  D  QF  F     E  ++      L+ 
Sbjct: 21  VAAFDLETWIGRYIDWISLAQNCSPATALNYRSDLEQFAAFAGQKGEADLSA-----LTP 75

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R FI       +   S+ R LS ++ F  YL  +        L +R  K  + LP+A
Sbjct: 76  ERVRLFIRGLSGWGLSATSVSRKLSALRGFCGYLTDQSAIPSDPTLPIRGPKWPDHLPQA 135

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L +     L+      ++  T    ARN  +L L Y  GLR++E +SL   ++ + +  +
Sbjct: 136 LTQDAVNRLI------SAAGTIEPAARNRCLLELAYSAGLRVAELVSLKWSDLDETERWI 189

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R+VP       A+ E+   CP      +    F G  GK L      R + 
Sbjct: 190 TVMGKGSKERMVPYGQWAASALAEWKAQCPPSEKGWV----FPGKGGKSLTERTVHRLVE 245

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
              +  G P   + HTLRH FATH+L  G  ++++Q +LGH  L TTQ Y  ++ +    
Sbjct: 246 AASQLAGTP-GASPHTLRHCFATHMLEGGASVKAVQELLGHESLLTTQRYLRISPER--- 301

Query: 309 WMMEIYDQTHPSITQKD 325
            +   YD  +  ++++D
Sbjct: 302 -LRRSYDDVNDDLSERD 317


>gi|313139852|ref|ZP_07802045.1| site-specific tyrosine recombinase XerC [Bifidobacterium bifidum
           NCIMB 41171]
 gi|313132362|gb|EFR49979.1| site-specific tyrosine recombinase XerC [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 351

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 154/334 (46%), Gaps = 46/334 (13%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L   RGLS  T+++Y  D R+ L  LA        I  +RQ++  ++R +++   T
Sbjct: 27  FLAYLRANRGLSGNTVKAYGTDVRECLHALASRG-----IADLRQVTTDDLRGWMAFE-T 80

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     S+ R +  ++SF  +  +           +   K  ++LP  L E QA  L+D 
Sbjct: 81  RDHARSSMARKVVSVRSFFAWAHEHGRIEADPAAVLMTPKLPDTLPSVLTEAQAERLMDR 140

Query: 141 V----LLHTSHETKW-------------------------IDARNSAILYLLYGCGLRIS 171
           V     LH +   ++                         +  R++A+L LLY  G+R++
Sbjct: 141 VDDDASLHAASSQRYETRHDEMPRLDSAHRGEGMSQRDEVVALRDAAMLELLYATGIRVA 200

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQ---- 226
           E + L   ++     T+R+ GKG K R+VP      KA+  + +   P  L         
Sbjct: 201 ELVGLDIGDVDWSHRTIRVTGKGSKQRVVPFGDPAEKALAGWKEHGRPLILRRAGAGTLD 260

Query: 227 -LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
              LF G+RG+ ++  + +  + +  R  G+P   + H+LRHS ATH+L  G DLR +Q 
Sbjct: 261 TAALFLGMRGRRIDQRIVRDVVHRAARESGVP-DISPHSLRHSAATHMLDGGADLREVQE 319

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           +LGH  L TTQ YT+V+ +     + E Y Q  P
Sbjct: 320 MLGHSSLRTTQRYTHVSIEQ----LKERYRQAFP 349


>gi|212715582|ref|ZP_03323710.1| hypothetical protein BIFCAT_00481 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660949|gb|EEB21524.1| hypothetical protein BIFCAT_00481 [Bifidobacterium catenulatum DSM
           16992]
          Length = 317

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 153/319 (47%), Gaps = 31/319 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L ++++ERGLSK T+ +Y  D +++  +LA        I  I  ++  ++  +++  
Sbjct: 9   RQFLAHIDVERGLSKATVSAYGADLKKYRQWLA-----NRGINDITSVTTQDVENYVAFL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  RS  R L+ I +F ++        +     ++  K +++LP  L   +   L+
Sbjct: 64  DESGESARSKARRLASIHAFHRFAVDEHSVADDVSAQVKAPKGASTLPDVLAIDEVARLL 123

Query: 139 -----------DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
                      D+  L  S +   +  R+ A+L  +Y  G R+SEA      ++  +   
Sbjct: 124 EAIPVSQNRACDDASLEVSDDPVML--RDKALLEFMYATGARVSEACGANLDDVDTESRI 181

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGV 242
            R+ GKG K R+VP+     +AI  Y       L    + P     LF   RG+ L+   
Sbjct: 182 ARLMGKGSKQRLVPVGSYACEAISRYVRSGRPILESKSKGPQERRALFLNKRGRRLSRQS 241

Query: 243 FQRYIRQL--RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               IR    R ++  PL    HTLRHSFATHL+  G D+R++Q +LGH  ++TTQIYT+
Sbjct: 242 VWEIIRVAGERAHIDKPLHP--HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTH 299

Query: 301 VNSKNGGDWMMEIYDQTHP 319
           V+ +N    ++E Y  +HP
Sbjct: 300 VSPEN----LIETYLTSHP 314


>gi|116491053|ref|YP_810597.1| tyrosine recombinase XerC subunit [Oenococcus oeni PSU-1]
 gi|118586889|ref|ZP_01544323.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163]
 gi|290890534|ref|ZP_06553609.1| hypothetical protein AWRIB429_0999 [Oenococcus oeni AWRIB429]
 gi|116091778|gb|ABJ56932.1| tyrosine recombinase XerC subunit [Oenococcus oeni PSU-1]
 gi|118432721|gb|EAV39453.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163]
 gi|290479930|gb|EFD88579.1| hypothetical protein AWRIB429_0999 [Oenococcus oeni AWRIB429]
          Length = 307

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 152/310 (49%), Gaps = 28/310 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + + L+ ER  S LTL++Y  D  +F+ F +    +    +    +   ++R +++  
Sbjct: 9   KKYEEYLQAERQYSTLTLKAYREDIGEFVNFFS----QNGGFKDFSAIDRFDVRIYLNNL 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +K+   S+ R +S ++SF  +L +  +  ++   N+     +  LP  L   + +  +
Sbjct: 65  YERKLAKTSIARKISSLRSFYHFLIENSLAKKNPFANIEFRSSNKKLPEFLYPAEVIEYL 124

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                      +++  RNSA++ LLY  G+RI E  +LT   I  +   + I GKG K R
Sbjct: 125 RAAA--DPQNDQYL--RNSALIELLYATGMRIFEITNLTFSQIDFNSQIVDITGKGKKQR 180

Query: 199 IVPL-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           I+P            LP   K + ++ +   +         +F   RG+ L     +  +
Sbjct: 181 IIPFGKPALASLKQYLPWREKTMQKFSEKHSY---------IFINTRGRQLTETGAEYIL 231

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +Q+ +   L  +   H LRHSFATHLL+NG D+R++Q +LGH  LSTTQIYT++ ++N  
Sbjct: 232 KQVSKRSKLTANIHPHMLRHSFATHLLNNGADIRTVQELLGHASLSTTQIYTHITTENLQ 291

Query: 308 DWMMEIYDQT 317
           +   + +D+ 
Sbjct: 292 ENYKKFFDRA 301


>gi|89898494|ref|YP_515604.1| site-specific tyrosine recombinase XerC [Chlamydophila felis
           Fe/C-56]
 gi|123763207|sp|Q253S9|XERC_CHLFF RecName: Full=Tyrosine recombinase xerC
 gi|89331866|dbj|BAE81459.1| integrase/recombinase [Chlamydophila felis Fe/C-56]
          Length = 312

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 148/313 (47%), Gaps = 25/313 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLA-------------FYTEEKITIQTIRQL 66
           ++L+N+   +  S  TL++Y  D   F +FL              F  E + T       
Sbjct: 10  DYLKNI---KAASPHTLRNYCIDLNSFKVFLEKHGKLSPSMPICLFSKERQETNLPFSLF 66

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           +   +R +I +   +    R++KR LS IKSF  Y  K +I  E     +   +    LP
Sbjct: 67  TKDAVRLYILELMQENKAKRTIKRRLSAIKSFSHYCLKHRILLEDPTETIHGPRLPKELP 126

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             +  +Q       +L+ T   +K+   R+  +L L Y  GLRISE +SL   +I  + +
Sbjct: 127 SPITYEQV-----EILMATPDLSKYTGLRDRCLLELFYSSGLRISEIVSLNHWDIDFNSN 181

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            +RI+GKG K RI+P+     + + +Y +             +F    G  L      R 
Sbjct: 182 LIRIRGKGKKERIIPITTLAAQWLKQYLNHPERAGVAKDSQAIFLNCFGTRLTTRSIDRK 241

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
            ++  R  GL  + T HT+RH+ ATH L NG DL++IQ++LGH  L TT IYT+V+ K  
Sbjct: 242 FQKYLRLSGLSGNITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMK-- 299

Query: 307 GDWMMEIYDQTHP 319
                + ++++HP
Sbjct: 300 --LKKQTHNESHP 310


>gi|294340185|emb|CAZ88557.1| Tyrosine recombinase xerD [Thiomonas sp. 3As]
          Length = 317

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/285 (31%), Positives = 143/285 (50%), Gaps = 19/285 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E GLS  TL +Y  D      +LAF   + +   T+R     +++A+I+ R  Q   
Sbjct: 28  LWLEDGLSPNTLAAYRRDLTLMARWLAFSQRQPLIEATLR-----DVQAYIAARFMQSKA 82

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R L  ++ F ++  +  + T+   L +   ++    P+ L+E Q    V+ +L  
Sbjct: 83  TSS-NRRLVVLRRFYRWALREHLRTDDPTLQLDTARQPPRRPKTLSEAQ----VEALLAA 137

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
              +T  +  R+ A+L LLY  GLR+SE ++L    +  DQ  ++I GKG K R+VP   
Sbjct: 138 PEVDTP-LGLRDRAMLELLYASGLRVSELVALPVVRVSLDQGVVQIAGKGGKERLVPFGS 196

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP-LFRGIRG-------KPLNPGVFQRYIRQLRRYLGL 256
           + +  +  Y      +L      P LF   R          +   +F   I+   R  G+
Sbjct: 197 AAQDWLQNYLRTARHELLQGRDSPFLFVTARSGQSARETTGMTRQMFWMRIKAYARKAGI 256

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            +  + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT++
Sbjct: 257 DVPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHI 301


>gi|332874932|ref|ZP_08442783.1| tyrosine recombinase XerD [Acinetobacter baumannii 6014059]
 gi|323516350|gb|ADX90731.1| site-specific recombinase XerD [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332736875|gb|EGJ67851.1| tyrosine recombinase XerD [Acinetobacter baumannii 6014059]
          Length = 306

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 80/240 (33%), Positives = 129/240 (53%), Gaps = 11/240 (4%)

Query: 82  KIGD--RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           K+G   RS+ R LS ++ F K+L+++K+ +++ +    + K   +LP+ L E+    L+ 
Sbjct: 74  KVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLCEEDVEALIQ 133

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              + T+     +  R+ A+  +LY CGLR+SE L+L  + I   Q  LRI GKG+K R+
Sbjct: 134 APDITTA-----LGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERL 188

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPL       +  Y +        +    LF    G  ++   F   I++      +   
Sbjct: 189 VPLGQYACDWVERYLNEARPQFYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAE 248

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        M +++++ HP
Sbjct: 249 LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR----MQQLHEKHHP 304


>gi|326771762|ref|ZP_08231047.1| site-specific recombinase, phage integrase family [Actinomyces
           viscosus C505]
 gi|326637895|gb|EGE38796.1| site-specific recombinase, phage integrase family [Actinomyces
           viscosus C505]
          Length = 307

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 145/302 (48%), Gaps = 19/302 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRAFISKRRTQKI 83
           L ++R LS  T+++Y  D    L FL     +   +   +  L   ++R +++       
Sbjct: 16  LALQRDLSGHTVRAYLVDINDLLSFLGVGEGDAEPVDAALATLDLADLRDWLAAMAASGH 75

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
              +L R  + +++F  +  +  + T      +R  +  N LP  L  +QA  L+     
Sbjct: 76  SRATLARRSASVRTFSSWAFETGLLTSDVAARLRAPRVDNRLPGVLTTQQASQLLKTAS- 134

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL- 202
             + +   +  R+ AI+  LY  G+R+SE + L   ++   Q TLR+ GKG K R VP  
Sbjct: 135 DLASDGHVLAVRDLAIIETLYATGVRVSELVGLDVADLDHSQRTLRVLGKGRKERTVPYG 194

Query: 203 LPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           LP+ +   LE +     ++C  D        LF G RG+ ++P   +  + +L     +P
Sbjct: 195 LPAAKA--LETWLHRRGEICAVDAGG----ALFLGARGRRIDPRAVRDVVHRLCAAAQVP 248

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRHS ATH+L  G DLRS+Q  LGH  L+TTQ YT+V+++     +  +Y+Q 
Sbjct: 249 -DLGPHGLRHSTATHVLGGGADLRSVQEFLGHSSLATTQRYTHVSAER----LRSVYEQA 303

Query: 318 HP 319
            P
Sbjct: 304 FP 305


>gi|326384761|ref|ZP_08206438.1| site-specific tyrosine recombinase XerD [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326196569|gb|EGD53766.1| site-specific tyrosine recombinase XerD [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 307

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 147/310 (47%), Gaps = 28/310 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI----- 75
           +L +L +ERG +  T+ SY  D  ++  FLA        + T+ +++  ++RAF+     
Sbjct: 12  YLDHLTVERGSATNTVASYRRDLLRYNTFLAGRG-----VTTMSEVTEDDVRAFLVALRR 66

Query: 76  --SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
              +R    + D S+ R+L   + F K+     +T      ++R  K    LP++L    
Sbjct: 67  GDPERGVPGLADSSVARTLVAARGFHKFCAAEGLTATDVAHSVRPPKPPRRLPKSLPIDD 126

Query: 134 ALTLVDNVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            L ++D            +D     R+ A++ LLY CG RISE  SL   ++  +   + 
Sbjct: 127 VLAILD--------AAGAVDGPRGLRDRALVELLYSCGARISEVTSLDLDDLDLEHRAVV 178

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           ++GKG K RIVP+     +A+  Y       L       LF  IRG  L+     + +  
Sbjct: 179 LRGKGGKERIVPVGGPAIEAVDAYLVRGRPALVKKSTPALFLNIRGGRLSRQSAWQVLVD 238

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQ+YT V        
Sbjct: 239 AAERAGVDKEVSPHTLRHSFATHLLDGGADVRVVQELLGHSSVTTTQVYTLVTVNT---- 294

Query: 310 MMEIYDQTHP 319
           M E+Y  +HP
Sbjct: 295 MREVYATSHP 304


>gi|162448003|ref|YP_001621135.1| integrase/recombinase, XerD-like protein [Acholeplasma laidlawii
           PG-8A]
 gi|161986110|gb|ABX81759.1| integrase/recombinase, XerD-like protein [Acholeplasma laidlawii
           PG-8A]
          Length = 306

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 149/304 (49%), Gaps = 16/304 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++   L IE+  S+ T  SY  D + F  FL    +E +    +        R +IS   
Sbjct: 6   DYKDYLIIEKNFSEHTAISYINDVKGFEDFL---IKEGLAKDLLGARRPRLARNYISYLD 62

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q    +++ R LS +K+F  YL  +++  E+   +++  K + +LP  ++E+    L D
Sbjct: 63  NQDFKKKTIARKLSSLKNFYNYLIFKELIEENIFSDIKAPKVAKTLPHIIDEEAINYLFD 122

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           ++       +K +  RN  IL LLY CG+R SE ++L  ++I      + I GKG K R 
Sbjct: 123 SI-----DTSKPLGYRNLVILDLLYSCGVRASELINLEIKDIYLSSGQILIHGKGKKDRY 177

Query: 200 VPLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           + L   + + I  Y       L    +   Q  LF   +G PL     +  + Q+ +  G
Sbjct: 178 IILHEKLIEEIRHYLSFVRVTLLSKGDDTNQQKLFINYKGGPLTVRGLRVILNQMIKDSG 237

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
              +   H LRH+FAT +L++G DLR +Q +LGH  L +TQIYT+V+     + + E Y 
Sbjct: 238 ETYAIHPHMLRHAFATTMLNHGADLRVVQELLGHEHLKSTQIYTHVSK----EQLKEKYM 293

Query: 316 QTHP 319
           QTHP
Sbjct: 294 QTHP 297


>gi|123440588|ref|YP_001004582.1| site-specific tyrosine recombinase XerC [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122087549|emb|CAL10330.1| putative integrase/recombinase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 303

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 155/309 (50%), Gaps = 17/309 (5%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           S  L  + + +L+ L++ER LS LT+ SY    RQ    +     E++ +   + L   +
Sbjct: 5   STSLAPQVEAFLRYLKVERQLSPLTITSYR---RQLQALMEM--GEQMGLAHWQTLDAAQ 59

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +R+ +S+ +   +   SL   LS ++SFL +L  + +   +    +   +    LP+ ++
Sbjct: 60  VRSLVSRSKRAGLHSSSLALRLSALRSFLNWLVSQGVLQANPAKGVSTPRSGRHLPKNID 119

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             +   L+D  L         +  R+ A+L ++YG GLR+SE + +  +++      + +
Sbjct: 120 VDEVAKLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGMNCKHVDLASGEVWV 173

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG K R VP+  +  K +  + +L   +L       +F    GK ++    Q+   + 
Sbjct: 174 MGKGSKERKVPIGKTAVKWLDHWLELR--ELFEPQDDAIFLANTGKRISARNVQKRFAEW 231

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+      H LRHSFATH+L + GDLR++Q +LGH  L+TTQIYT+++ ++    +
Sbjct: 232 GVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----L 287

Query: 311 MEIYDQTHP 319
             +YD  HP
Sbjct: 288 ATVYDAAHP 296


>gi|315302916|ref|ZP_07873649.1| tyrosine recombinase XerC [Listeria ivanovii FSL F6-596]
 gi|313628712|gb|EFR97112.1| tyrosine recombinase XerC [Listeria ivanovii FSL F6-596]
          Length = 300

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 151/307 (49%), Gaps = 17/307 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q +L  L  ER  S+ T  +YE D    L F  F  E+ IT    +Q+++ ++R ++
Sbjct: 6   KWEQMFLDYLHSERNYSENTSTAYEND---LLDFRRFLNEQAIT--QYKQVTFLDVRIYL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++ + +     ++ R +S ++SF  +L +  + TE+    + + K    LP+    ++  
Sbjct: 61  TELKQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEME 120

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L    +++  +ET  I  R+  +L +LYG G+R+SE   +   +I      + I+GKG+
Sbjct: 121 ALFQ--VVYEDNETLTI--RDRVLLEVLYGTGIRVSECAGILLTDIDQTYQAILIRGKGN 176

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNI---QLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K R VP       AI +Y D C   L          L     G PL     +  + ++  
Sbjct: 177 KERYVPFGVYAEDAITDYLD-CRLALMKRFNKTHDSLLINHYGDPLTTRGIRYCLTKIIS 235

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L      H LRH+FAT LL+NG D+R++Q +LGH  LS+TQIYT+V  ++    +  
Sbjct: 236 KASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----LKS 291

Query: 313 IYDQTHP 319
            Y + HP
Sbjct: 292 TYMKHHP 298


>gi|325473776|gb|EGC76964.1| integrase/recombinase XerD [Treponema denticola F0402]
          Length = 267

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 132/240 (55%), Gaps = 16/240 (6%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           FI  R    I  +++ + ++ + SF ++L    +  ++   ++   K+  +LPR L+  +
Sbjct: 17  FILHRSESGIMAKTIAKDIAALNSFFRFLIIEGVRKDNPSESIERPKREKTLPRVLSPDE 76

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
             +L   + L + +     + R+ A+  L+Y  GLR+SE ++L  ++I  D+  +++ GK
Sbjct: 77  VDSLFAAIPLDSPN-----NIRDRALFELIYSAGLRVSEIVNLKMEDIFYDEDLIKVTGK 131

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-------NLNIQLPLFRGIRGKPLN-PGVFQR 245
           G+K RIVP   + +  + +Y      +L       N  I   +F   RG  L   G+++R
Sbjct: 132 GNKERIVPFGSAAKYWLKQYILEARTELLKPKHPENTLISGSVFLNNRGAVLTRKGIWKR 191

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            I +L  + G+   T  HTLRHS+ATHLL+ G DLRS+Q +LGH  +STTQ+YT++  K+
Sbjct: 192 -INELSNFSGI--ETKVHTLRHSYATHLLAGGADLRSVQCLLGHSDISTTQVYTHIEDKS 248


>gi|303326777|ref|ZP_07357219.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3]
 gi|302862765|gb|EFL85697.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3]
          Length = 309

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 153/303 (50%), Gaps = 21/303 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ--TIRQLSYTEIRAFISKR 78
           WL  L  +RGLS  T++SY  D   F +F     EE++     +   L   EI  +++  
Sbjct: 20  WLDYLLAQRGLSPRTVESYGQDLESFFLF-----EEELAQSGGSASCLDEQEIFLYLAWL 74

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R++    R+L R LS +++F  +  +      +  L + N K    LP  L+ ++    +
Sbjct: 75  RSRGNTGRTLARRLSALRAFFAFAVEEGTLKTNPALLLENPKLPQHLPEVLSREE----M 130

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           + +L+    + K    R+  +L +LY  GLR+SE  +L+  ++   +  +R+ GKG K R
Sbjct: 131 EKLLVLPDMDEK-SGRRDRCMLEMLYAAGLRVSELCNLSVADLDLQRGLVRVFGKGAKER 189

Query: 199 IVPLLPSVRKAILEYY-DLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL   ++  + +Y     P F    N    LF    G+ L+     + +++     G+
Sbjct: 190 LVPLHDMIQALLGDYLRSWRPLFSPGGN---QLFVNRSGRALSRQYIWKMVKKYTLLAGI 246

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HT RHSFATHLL  G DLR++Q +LGH  +S T+IYT+V ++     +  I+ Q
Sbjct: 247 RRAVSPHTFRHSFATHLLEGGADLRAVQLLLGHADISATEIYTHVQAER----LRGIHHQ 302

Query: 317 THP 319
            HP
Sbjct: 303 FHP 305


>gi|260771236|ref|ZP_05880163.1| tyrosine recombinase XerD [Vibrio furnissii CIP 102972]
 gi|260613833|gb|EEX39025.1| tyrosine recombinase XerD [Vibrio furnissii CIP 102972]
 gi|315179158|gb|ADT86072.1| site-specific tyrosine recombinase XerD [Vibrio furnissii NCTC
           11218]
          Length = 302

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 153/304 (50%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + +ERGLS+ TL SY  D  + L ++  +         +  +S + ++ + +  
Sbjct: 13  EQFLDAMWMERGLSENTLMSYRNDLMKLLDWMQRHNYR------LDFISLSGLQEYQTWL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R LS I+   +YL + K+  +     + + K    LP+ L+E Q     
Sbjct: 67  VDQDYKQTSRARMLSAIRRLFQYLHREKMRADDPSALLISPKLPKRLPKDLSEAQV---- 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            + LL   +    I+ R+ A+L LLY  GLR++E +SLT +NI   Q  +R+ GKG K R
Sbjct: 123 -DALLSAPNPDDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGKER 181

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VP+  +  + I  +       L L  Q    +F   R + +    F   I+      G+
Sbjct: 182 LVPMGENAIEWIETFLAQGRSHL-LGEQTSDVVFPSKRAQQMTRQTFWHRIKHYAVIAGI 240

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            +   + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 241 DVDKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHS 296

Query: 316 QTHP 319
           + HP
Sbjct: 297 EHHP 300


>gi|300767490|ref|ZP_07077402.1| tyrosine recombinase XerD [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|300495309|gb|EFK30465.1| tyrosine recombinase XerD [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
          Length = 305

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 154/307 (50%), Gaps = 26/307 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT----IQTIRQLSYTEIRAFI 75
           ++L  L +ERGL + T++SY  D   F  +L     ++IT    +     L+Y +     
Sbjct: 16  DYLHFLRVERGLVENTIKSYSQDLTTFSEYL---MSQQITDYRVVDRYVLLNYLQYLDEA 72

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            K R   I       S+S ++ F +YL +        +L +   K++  LP+ L+ ++  
Sbjct: 73  GKSRNTII------HSVSSLRKFFQYLAQMHAIDTDPMLKIDTPKRAQHLPQVLSPREVE 126

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+    L+T      +  R+  +L ++Y  GLR+SE ++LT  ++  D   ++  GKGD
Sbjct: 127 RLLAVPKLNTP-----LGLRDRTLLEVMYATGLRVSETINLTMDDLHLDLGLIQTIGKGD 181

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR---GKPLNPGVFQRYIRQLRR 252
           K RI+P+       I  Y       L    +   +  I    GK    GV++    +++ 
Sbjct: 182 KERIIPIGDVAIDFITRYLKTARPKLVSAKRRNSYLFINNHGGKLSRQGVWKNLKAEVKA 241

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+  + T HTLRHSFATH+L NG DLR +Q +LGH  +STTQIYT+++ K     + E
Sbjct: 242 -AGIEKNVTPHTLRHSFATHILENGADLRVVQELLGHADISTTQIYTHISKKR----LAE 296

Query: 313 IYDQTHP 319
           +Y++ HP
Sbjct: 297 VYNKYHP 303


>gi|90414248|ref|ZP_01222228.1| tyrosine recombinase [Photobacterium profundum 3TCK]
 gi|90324695|gb|EAS41236.1| tyrosine recombinase [Photobacterium profundum 3TCK]
          Length = 304

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 150/292 (51%), Gaps = 16/292 (5%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           ER LS  T Q+Y+   RQ           ++T  T+    +  +R   SK     +   S
Sbjct: 22  ERELSLHTQQNYK---RQLSTIAEQLVSFEVTDWTMVDAGW--VRQIASKGMRDGLKASS 76

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           +   LS ++SF  +L ++ I   +    +   +K+  LP+ L+  +    +D +L  + +
Sbjct: 77  ISMRLSALRSFFDFLVQKDILKANPAKGVAAPRKARPLPKNLDVDE----MDQLL--SVN 130

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
           E   +  R+ A++ L+YG GLR++E +SL  ++I   +  +R+ GKGDK RIVP     R
Sbjct: 131 EDDPLSIRDRAMMELMYGAGLRLAELVSLNVRDISLSKGDIRVIGKGDKERIVPFAGLAR 190

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + +  +  +    L    +  LF    G  ++    Q+ + +  +   +      H LRH
Sbjct: 191 EWVANWLKVRG-SLASGDESGLFVSKLGTRISTRNVQKRMAEWGQKQAVSSHINPHKLRH 249

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           SFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++    + ++YD+ HP
Sbjct: 250 SFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LAKVYDEAHP 297


>gi|295677507|ref|YP_003606031.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1002]
 gi|295437350|gb|ADG16520.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1002]
          Length = 316

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 140/296 (47%), Gaps = 17/296 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E GLS+ TL +Y  D R F  +LA      +   +   LS     A+ + R  QK  
Sbjct: 35  LWLEHGLSRNTLDAYRRDLRLFCEWLAHTRNASLDTASEADLS-----AYSAAR--QKDK 87

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R LS  + +  +  +         L +R+ K+    P  L+E Q   L+    + 
Sbjct: 88  ATSANRRLSVFRRYYAWAVREHRAAADPTLRLRSAKQPPRFPSTLSEAQVEALLGAPDID 147

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           T      +  R+  +L L+Y  GLR++E ++L    +  ++  +R+ GKG K R+VP   
Sbjct: 148 TP-----LGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGE 202

Query: 205 SVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
                I  Y  +  P  L       LF   R + +    F   I++  +  G+    + H
Sbjct: 203 EAHAWIERYLREARPALLGPRAADALFVTARAEGMTRQQFWNIIKRHAQAAGVHAPLSPH 262

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           TLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++ Q HP
Sbjct: 263 TLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARER----LKSLHAQHHP 314


>gi|332159818|ref|YP_004296395.1| site-specific tyrosine recombinase XerC [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318607639|emb|CBY29137.1| tyrosine recombinase XerC [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664048|gb|ADZ40692.1| site-specific tyrosine recombinase XerC [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330862565|emb|CBX72719.1| tyrosine recombinase xerC [Yersinia enterocolitica W22703]
          Length = 303

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 155/309 (50%), Gaps = 17/309 (5%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           S  L  + + +L+ L++ER LS LT+ SY    RQ    +     E++ +   + L   +
Sbjct: 5   STSLAPQVEAFLRYLKVERQLSPLTITSYR---RQLQALMEM--GEQMGLAHWQTLDAAQ 59

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +R+ +S+ +   +   SL   LS ++SFL +L  + +   +    +   +    LP+ ++
Sbjct: 60  VRSLVSRSKRAGLHSSSLALRLSALRSFLNWLVSQGVLQANPAKGVSTPRSGRHLPKNID 119

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             +   L+D  L         +  R+ A+L ++YG GLR+SE + +  +++      + +
Sbjct: 120 VDEVDKLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSEMVGMNCKHVDLASGDVWV 173

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG K R VP+  +  K +  + +L   +L       +F    GK ++    Q+   + 
Sbjct: 174 MGKGSKERKVPIGKTAVKWLEHWLELR--ELFEPQDDAIFLANTGKRISARNVQKRFAEW 231

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+      H LRHSFATH+L + GDLR++Q +LGH  L+TTQIYT+++ ++    +
Sbjct: 232 GVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----L 287

Query: 311 MEIYDQTHP 319
             +YD  HP
Sbjct: 288 ATVYDAAHP 296


>gi|28198560|ref|NP_778874.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa
           Temecula1]
 gi|182681239|ref|YP_001829399.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa M23]
 gi|73920482|sp|Q87DN0|XERD_XYLFT RecName: Full=Tyrosine recombinase xerD
 gi|28056644|gb|AAO28523.1| integrase/recombinase [Xylella fastidiosa Temecula1]
 gi|182631349|gb|ACB92125.1| tyrosine recombinase XerD [Xylella fastidiosa M23]
 gi|307579687|gb|ADN63656.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 324

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 97/307 (31%), Positives = 152/307 (49%), Gaps = 24/307 (7%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L  L I+ GLS+ TL SY  D    L  LA +   +     +  L+   +  +++ R  Q
Sbjct: 31  LDALWIKHGLSRHTLNSYRRD----LEGLARWNNGRAG--PLATLTPPALLDYLTWRTQQ 84

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                S  R  S +++F  Y  +     ++    + +    + LP+AL E Q    ++ +
Sbjct: 85  HYSPLSNARLRSVLRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQ----IEAL 140

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           L   S ET     RN A+L L+Y  GLR+SE ++L    +   Q  LRI GKG K R+VP
Sbjct: 141 LAAPSIETP-EGLRNRAMLELMYAAGLRVSELVTLPVAMLNQRQGVLRITGKGGKERLVP 199

Query: 202 LLPSVRKAILEYYDLC--------PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           L    +  +  Y +          P   + +  +PLF     K L+   F R+I+     
Sbjct: 200 LGEESQHWLQRYLEQARPSLAADKPIPADSDGDVPLFINTNLKRLSRQQFWRWIKHYAAL 259

Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           +G+ P   + H LRHSFATHLL++G DLR++Q +LGH  +STTQIYT +  ++    + +
Sbjct: 260 VGIAPNKVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTLIARQH----LQQ 315

Query: 313 IYDQTHP 319
           ++ Q HP
Sbjct: 316 LHAQHHP 322


>gi|168786649|ref|ZP_02811656.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC869]
 gi|189373217|gb|EDU91633.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC869]
          Length = 298

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 152/307 (49%), Gaps = 17/307 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+   RQ    + F +E    +Q  +Q     +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--GLQNWQQCDAAMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKTPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DINRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVIG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNALSWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHP 319
           +YD  HP
Sbjct: 286 VYDAAHP 292


>gi|68535950|ref|YP_250655.1| integrase/recombinase [Corynebacterium jeikeium K411]
 gi|68263549|emb|CAI37037.1| integrase/recombinase [Corynebacterium jeikeium K411]
          Length = 299

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 145/299 (48%), Gaps = 14/299 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++++L+ ER +S  TL +Y+ D  ++L++L     +++T   I           +  R+ 
Sbjct: 13  YIRHLKTERDVSVHTLSNYQRDLDRYLVWLGSKALQEVTATDIED-------HLVYLRKD 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +   S  R L+ I+    +            +++    +  S+P+AL+  Q   L++ 
Sbjct: 66  LNLAASSAARGLAAIRGLHSFAHADGRLPFDVAVDVPTPSQGGSIPKALSLAQVEALLNA 125

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           V          I+ R+ A+L +LY  G RI+E L L   ++  +Q  L ++GKG K RIV
Sbjct: 126 VP--AGDGASQINIRDRALLEMLYSTGARITELLDLDVDDLDREQRVLLVRGKGGKERIV 183

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           PL     +A+  Y       LN      LF   RG  L      + + Q     GL    
Sbjct: 184 PLGRPALQAVERYLVRARPSLNKKGSPALFLNNRGARLGRQSGFKIVSQAAEAAGLE-HV 242

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           + H+LRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V+ ++    + EI+  +HP
Sbjct: 243 SPHSLRHSFATHLLEGGADIRVVQELLGHASVATTQIYTKVSPEH----LREIWASSHP 297


>gi|146329514|ref|YP_001210015.1| tyrosine recombinase XerD [Dichelobacter nodosus VCS1703A]
 gi|146232984|gb|ABQ13962.1| tyrosine recombinase XerD [Dichelobacter nodosus VCS1703A]
          Length = 297

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 143/292 (48%), Gaps = 19/292 (6%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GLS  TL +Y  D +Q    LA    +  TI+ + Q+        +++   +     S+ 
Sbjct: 21  GLSDATLSAYRGDLQQVQKILADVPLKSATIEQMMQV--------LAQFHDRGYSHTSMA 72

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R  S +  F  Y  ++K  TE+ +  +   K    LP+ ++E          LL      
Sbjct: 73  RMRSSLNRFFSYQIEQKERTENPMHFLGRTKIRRHLPQTMSESDV-----EALLSAPDVQ 127

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
             +  R+ A+L LLY CGLR+SE + LT   I  D   ++I GKGDK R+VP      + 
Sbjct: 128 TILGLRDRAMLELLYACGLRVSELVGLTLHQIALDVGYVQILGKGDKERLVPFGEIAHEW 187

Query: 210 ILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS-TTAHTLRH 267
           +  Y  +  P  L   +   +F   RG  L+   F   ++     +GL  +  + HTLRH
Sbjct: 188 LQRYIQEARPQLLGQKMSDYVFVSQRGAALSRQAFWYRLKVYVCAVGLDSNKISPHTLRH 247

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           +FA+HLL++G DLRSIQ +LGH  LSTTQIYT++  +     +  ++ + HP
Sbjct: 248 AFASHLLAHGADLRSIQMLLGHSDLSTTQIYTHIADQR----LKSLFMKHHP 295


>gi|255532069|ref|YP_003092441.1| tyrosine recombinase XerD [Pedobacter heparinus DSM 2366]
 gi|255345053|gb|ACU04379.1| tyrosine recombinase XerD [Pedobacter heparinus DSM 2366]
          Length = 299

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 156/301 (51%), Gaps = 23/301 (7%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L++ER LS  ++++Y  D  +    L+ Y E       +++++  +++ F+S      + 
Sbjct: 14  LKLERSLSGNSIEAYLGDLNK----LSQYFESVDQTPQVKEITGDDLKHFVSWINELGML 69

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +  R +SG+K+F  +L   +I T      + + ++   LP  L+ ++      N ++ 
Sbjct: 70  PSTQARVVSGLKAFFSFLMLEEIITTDPSALLESPRQVKHLPDTLSIQEI-----NGMIG 124

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
               +K    RN AIL  LYGCGLR+SE  +L   ++ ++   +RI GKG+K R+VP   
Sbjct: 125 AIDASKPEGMRNKAILETLYGCGLRVSELSNLKISDVFEENEFIRIFGKGNKERLVP--- 181

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            + +  L+Y ++   +  +++ +       +F    G  L+       I+ L    G+  
Sbjct: 182 -IGQTALKYINIYLRESRVHVPIKKGHEDYIFLNRSGTRLSRISVFSIIKALALKSGIKK 240

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           S + HT RHSFATHL+  G DLR++Q +LGH  ++TT+IYT+++     D++  I  + H
Sbjct: 241 SISPHTFRHSFATHLIEGGADLRAVQEMLGHSSITTTEIYTHLDR----DYLRGIITEFH 296

Query: 319 P 319
           P
Sbjct: 297 P 297


>gi|149202773|ref|ZP_01879745.1| tyrosine recombinase XerD [Roseovarius sp. TM1035]
 gi|149144055|gb|EDM32089.1| tyrosine recombinase XerD [Roseovarius sp. TM1035]
          Length = 323

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 145/295 (49%), Gaps = 28/295 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+    E G +K TL +Y  D + F  ++     + + +QT+ Q        F      
Sbjct: 11  FLEAQAAELGAAKNTLLAYARDLKDFSEWV---ENQGLALQTLTQPDIDRYLVFCD---A 64

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q +   +  R LS I+   ++    ++  ++  + ++   K+  LP+ L+E++   L+D 
Sbjct: 65  QGLARATRARRLSAIRQLYRFAFDERLRADNPAIRIKGPGKAQRLPKTLSEEEVSRLLDM 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
              H    T    +RN+ ++ LLY  G+R+SE +SL       D   + ++GKG K R+V
Sbjct: 125 APAHG--RTASERSRNACLVALLYATGMRVSELVSLPLGAARGDPRMILVRGKGGKERMV 182

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---LNPGVFQRYIRQLRRYLGL- 256
           PL P  R A+ ++  L   D   + +    +G++  P    + G      R   R+  L 
Sbjct: 183 PLSPPARAALSDW--LAIRDAEESARRA--KGVQSSPYLFASGGASGHLTRH--RFYNLI 236

Query: 257 ----------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                     P   T HTLRH+FATHLL+NG DLR IQ++LGH  ++TT+IYT+V
Sbjct: 237 KEISVKAHVDPDKVTPHTLRHAFATHLLANGADLRVIQTLLGHADVATTEIYTHV 291


>gi|167036277|ref|YP_001671508.1| site-specific tyrosine recombinase XerC [Pseudomonas putida GB-1]
 gi|189030081|sp|B0KQ43|XERC_PSEPG RecName: Full=Tyrosine recombinase xerC
 gi|166862765|gb|ABZ01173.1| tyrosine recombinase XerC [Pseudomonas putida GB-1]
          Length = 299

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 152/310 (49%), Gaps = 29/310 (9%)

Query: 17  ERQ--NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ERQ   +  +L  ER +S+ TL  Y  D  + +   A+  E  I     + L   ++R  
Sbjct: 2   ERQLEAYCAHLRNERQVSEHTLLGYRRDLDKVI---AYCKEHGIA--DWQALQIQQLRQL 56

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I++        RSL R LS ++   +YL +  +        +   K    LP+ L+  +A
Sbjct: 57  IARLHHHGQSSRSLARLLSAVRGLYRYLNREGLCQHDPATGLSAPKGERRLPKVLDTDRA 116

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           L L+D  +     +  +I  R+ AIL L Y  GLR+SE  +L   ++      +++ GKG
Sbjct: 117 LQLLDGGV-----DDDFIARRDQAILELFYSSGLRLSELTNLDLDHLDLAAGLVQVLGKG 171

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI----RGKPLNPGVFQRYIRQL 250
            K R++P+    R+A+  +Y L        I  P  R +    +G  ++P   +  ++  
Sbjct: 172 GKARVLPVGRKAREALQAWYRL------RGIGNPRDRAVFITRQGNRISPQAVRLRVKAA 225

Query: 251 -RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             R LG  L    H LRHSFA+H+L +  DLR++Q +LGH  +STTQIYT+++ ++    
Sbjct: 226 GERELGQHLHP--HMLRHSFASHVLESSQDLRAVQELLGHADISTTQIYTHLDFQH---- 279

Query: 310 MMEIYDQTHP 319
           +  +YD  HP
Sbjct: 280 LAAVYDSAHP 289


>gi|310821627|ref|YP_003953985.1| Tyrosine recombinase XerD [Stigmatella aurantiaca DW4/3-1]
 gi|309394699|gb|ADO72158.1| Tyrosine recombinase XerD [Stigmatella aurantiaca DW4/3-1]
          Length = 310

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 148/309 (47%), Gaps = 31/309 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE--KITIQTIRQLSYTEIRAFISK 77
            ++  +  ERGLS  T+ +Y  D       L  Y E+     +  + ++   ++ A + +
Sbjct: 7   TFIAFIRAERGLSGKTVDAYAAD-------LTVYFEDLRARGVLDVARVKQEDVTAHLMQ 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + +  RS  R L+ ++ F ++L   K   +    ++   + +  LP  L     L  
Sbjct: 60  LGARGLSKRSQARHLAAVRGFHRFLIAEKHAEKDPTEDLDTPRSARKLPSFLT----LEE 115

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           V+  LL    E      R+ A+L LLY  GLR+SE  SL   ++      L  +GKG K 
Sbjct: 116 VEQ-LLAAPDERHPTGMRDKAMLELLYATGLRVSELCSLGINDVQLGAGYLVAKGKGSKE 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQR--YIRQLRRY 253
           R+VP+  SV    ++ Y   P    L       LF   RG     G F R  + + L+RY
Sbjct: 175 RVVPV-GSVAVEKVQAYLGGPRQHLLGKRQSRSLFITPRG-----GAFTRQGFWKLLKRY 228

Query: 254 L---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+    + H LRHSFATHL+  G DLR++Q++LGH  L+TTQIYT+VNS      +
Sbjct: 229 ALKAGIRKPISPHKLRHSFATHLVERGADLRAVQAMLGHADLATTQIYTHVNSAR----L 284

Query: 311 MEIYDQTHP 319
             +YD+ HP
Sbjct: 285 RAVYDEHHP 293


>gi|257063755|ref|YP_003143427.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
 gi|256791408|gb|ACV22078.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
          Length = 313

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 122/256 (47%), Gaps = 9/256 (3%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           +++Y ++R ++ +    +   +++ R LS IK   +++    +     +  ++  K +  
Sbjct: 64  RITYRQVRRYLGELTQAQYSRKTINRRLSAIKGLFRWMNLTGVIDSDPVSVIQGPKSAKG 123

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LPR +        +  +L          D RN AIL  LY CG RISEA  L   ++  D
Sbjct: 124 LPRMIPASD----MGRILTVYKDSDDPADMRNQAILEFLYACGARISEASGLMLADVDFD 179

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
              +++ GKG K RI+PL     K +  Y +   P  L        F   RG  + P   
Sbjct: 180 AKQVKVFGKGSKERIIPLHDMAVKTMKSYAWRARPVLLKGKPNEFFFVSTRGNRMGPDAM 239

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           ++  +      G+  S T H +RH+FAT L+  G DL+S+Q +LGH  LSTTQIYT+++ 
Sbjct: 240 RKMFKNTLIMAGVDTSYTPHDMRHTFATDLVEGGADLKSVQEMLGHESLSTTQIYTHLSV 299

Query: 304 KNGGDWMMEIYDQTHP 319
               D + +   Q HP
Sbjct: 300 ----DHLKQAVHQAHP 311


>gi|123443576|ref|YP_001007549.1| site-specific tyrosine recombinase XerD [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122090537|emb|CAL13406.1| integrase/recombinase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 299

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 152/303 (50%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER L++ TL SY  D      +L  +  + +   +       ++++F+++R
Sbjct: 10  EQFLDALWLERNLAENTLASYRLDLHALSGWLEHHDSDLLRAGS------QDLQSFLAER 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q     
Sbjct: 64  IEGGYKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQV---- 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL++ +    ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K R
Sbjct: 120 -EALLNSPNVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKER 178

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       I  Y +   P+ +N      LF   R + +    F   I+      G+ 
Sbjct: 179 LVPLGEEAVYWIENYMEHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGID 238

Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  ++ Q
Sbjct: 239 SERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKLLHQQ 294

Query: 317 THP 319
            HP
Sbjct: 295 HHP 297


>gi|313837516|gb|EFS75230.1| tyrosine recombinase XerD [Propionibacterium acnes HL037PA2]
 gi|314927276|gb|EFS91107.1| tyrosine recombinase XerD [Propionibacterium acnes HL044PA1]
 gi|314972722|gb|EFT16819.1| tyrosine recombinase XerD [Propionibacterium acnes HL037PA3]
 gi|328907874|gb|EGG27637.1| site-specific tyrosine recombinase XerD [Propionibacterium sp. P08]
          Length = 306

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 161/311 (51%), Gaps = 27/311 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L++L +ERGLS  T+Q+Y  D  ++  +L     +   I+++ +++  ++  F  +R
Sbjct: 10  EDYLRHLVVERGLSDNTVQAYRRDLLRYQKYL-----DSRGIRSLAEVTRVDVEEF--RR 62

Query: 79  RTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              ++G    S+ R +  +++   +  +           +    +S  LP+AL  +Q   
Sbjct: 63  YLDQLGLAPASVTRCVVAVRNLHHFAVESGQAKTDVTAGISPGTRSRRLPKALTMEQVEA 122

Query: 137 LVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNI---MDDQS-TLRIQ 191
           L+       + +T  ++  R++A+L LLYG G R+SE  +L   +I   +DD    LR+ 
Sbjct: 123 LL------AAPDTSTVEGLRDTALLELLYGTGARVSEVCALDVDDIRPVLDDPDLGLRLI 176

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           GKGDK RIVPL     +A+  +     P    L N +  L    RG+ L+       IR+
Sbjct: 177 GKGDKERIVPLGSYAAQAVDAWLVRGRPAWAQLGNGEHALLLNTRGRRLSRQSAWTVIRR 236

Query: 250 LRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                GL +   + H+LRHS+ATHLL  G D+R +Q +LGH  ++TTQIYT V +    D
Sbjct: 237 AGEAAGLDVEHLSPHSLRHSYATHLLDGGADIRVVQELLGHSSVTTTQIYTLVTA----D 292

Query: 309 WMMEIYDQTHP 319
            + E+Y  +HP
Sbjct: 293 HLREVYRSSHP 303


>gi|238918092|ref|YP_002931606.1| site-specific tyrosine recombinase XerC [Edwardsiella ictaluri
           93-146]
 gi|238867660|gb|ACR67371.1| tyrosine recombinase XerC, putative [Edwardsiella ictaluri 93-146]
          Length = 300

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 153/315 (48%), Gaps = 23/315 (7%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +PE +S  ++     +LQ + +ER LS  T+++Y    RQ    +A   E  +   T   
Sbjct: 1   MPESLSTPVVA----FLQMMRVERQLSPRTVETYR---RQLAASVALLLEGGLCDWTA-- 51

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           L    +R+ +++ R Q +   SL   LS ++SFL +   R   T +    +   ++   L
Sbjct: 52  LDTVRVRSLVARSRRQGLEPASLALRLSALRSFLDWQVSRGALTANPAKGVSAPRQGRHL 111

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P+ L+      L+D        E   +  R+ A+L ++YG GLR+SE + L  ++     
Sbjct: 112 PKNLDVDDVNRLLD------IDEGDTLAVRDRAMLEVMYGGGLRLSELVGLDCRHADLTT 165

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQ 244
             + + GKG K R    LP  R+A+          L+L  Q   LF    G  ++P   Q
Sbjct: 166 GEVWVLGKGSKER---RLPVGREAVRWLQKWLSLRLSLQPQDDALFVSRLGGRISPRSVQ 222

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +   +     G+      H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ +
Sbjct: 223 KRFAEWGVKQGVTSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQ 282

Query: 305 NGGDWMMEIYDQTHP 319
           +    +  +YD  HP
Sbjct: 283 H----LATVYDAAHP 293


>gi|28378545|ref|NP_785437.1| integrase/recombinase [Lactobacillus plantarum WCFS1]
 gi|254556759|ref|YP_003063176.1| integrase/recombinase [Lactobacillus plantarum JDM1]
 gi|308180702|ref|YP_003924830.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28271381|emb|CAD64286.1| integrase/recombinase [Lactobacillus plantarum WCFS1]
 gi|254045686|gb|ACT62479.1| integrase/recombinase [Lactobacillus plantarum JDM1]
 gi|308046193|gb|ADN98736.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 296

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 154/307 (50%), Gaps = 26/307 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT----IQTIRQLSYTEIRAFI 75
           ++L  L +ERGL + T++SY  D   F  +L     ++IT    +     L+Y +     
Sbjct: 7   DYLHFLRVERGLVENTIKSYSQDLTTFSEYL---MSQQITDYRVVDRYVLLNYLQYLDEA 63

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            K R   I       S+S ++ F +YL +        +L +   K++  LP+ L+ ++  
Sbjct: 64  GKSRNTII------HSVSSLRKFFQYLAQMHAIDTDPMLKIDTPKRAQHLPQVLSPREVE 117

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+    L+T      +  R+  +L ++Y  GLR+SE ++LT  ++  D   ++  GKGD
Sbjct: 118 RLLAVPKLNTP-----LGLRDRTLLEVMYATGLRVSETINLTMDDLHLDLGLIQTIGKGD 172

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR---GKPLNPGVFQRYIRQLRR 252
           K RI+P+       I  Y       L    +   +  I    GK    GV++    +++ 
Sbjct: 173 KERIIPIGDVAIDFITRYLKTARPKLVSAKRRNSYLFINNHGGKLSRQGVWKNLKAEVKA 232

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+  + T HTLRHSFATH+L NG DLR +Q +LGH  +STTQIYT+++ K     + E
Sbjct: 233 -AGIEKNVTPHTLRHSFATHILENGADLRVVQELLGHADISTTQIYTHISKKR----LAE 287

Query: 313 IYDQTHP 319
           +Y++ HP
Sbjct: 288 VYNKYHP 294


>gi|184201180|ref|YP_001855387.1| tyrosine recombinase XerD [Kocuria rhizophila DC2201]
 gi|183581410|dbj|BAG29881.1| tyrosine recombinase XerD [Kocuria rhizophila DC2201]
          Length = 304

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 153/311 (49%), Gaps = 25/311 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L +ERGL+  T+ +Y  D  ++L  L   T     ++  R ++   +RAF+ + R 
Sbjct: 4   YLDHLVVERGLAANTVSAYRRDLARYLQHL---TATAAHVRVPRDITADHVRAFVRRIRE 60

Query: 81  -----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEKQA 134
                  +  RS  R L+ ++    +       TES++      + S  +P + L +   
Sbjct: 61  GDAAHPALSARSSARVLAAVRGAHAFW-----VTESSVDTDVASRVSPPMPPQRLPKAIG 115

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM----DDQSTLRI 190
           +T V+N+L     +T     R  A L LLY  G RISEA++L   ++     +D + +R+
Sbjct: 116 VTEVENLLAAPDPDTP-AGLRARAFLELLYATGARISEAVALDVDDLAGLHDEDLALIRV 174

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIR 248
            GKG K R+VP+      A+  Y      +L  + +    +F   RG  ++       ++
Sbjct: 175 TGKGAKQRLVPVGSFAVAALDRYLIRARPELARHGRGSPAVFLNARGTRISRQTAWNMVK 234

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
              R +      T HTLRHSFATHLL  G DLR +Q +LGH  L+TTQIYT V+ ++   
Sbjct: 235 DAARTIHQEERITPHTLRHSFATHLLEGGADLRVVQELLGHASLATTQIYTRVSVES--- 291

Query: 309 WMMEIYDQTHP 319
            + E+Y  +HP
Sbjct: 292 -LREVYATSHP 301


>gi|148550339|ref|YP_001270441.1| site-specific tyrosine recombinase XerC [Pseudomonas putida F1]
 gi|166918895|sp|A5WAU7|XERC_PSEP1 RecName: Full=Tyrosine recombinase xerC
 gi|148514397|gb|ABQ81257.1| tyrosine recombinase XerC subunit [Pseudomonas putida F1]
          Length = 299

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 150/306 (49%), Gaps = 27/306 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +  +L  ER +S+ TL  Y  D  + +   A+  E  I     + L   ++R  I++ 
Sbjct: 6   EAYCAHLRNERQVSEHTLLGYRRDLEKVI---AYCKEHGIA--EWQALQIQQLRQLIARL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  RSL R LS ++   +YL +  +        +   K    LP+ L+  +AL L+
Sbjct: 61  HHHGQSPRSLARLLSAVRGLYRYLNREGLCQHDPATGLSAPKGERRLPKVLDTDRALQLL 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D  +     +  +I  R+ AIL L Y  GLR+SE  +L   ++      +++ GKG K R
Sbjct: 121 DGGV-----DDDFIARRDQAILELFYSSGLRLSELTNLDLDHLDLAAGLVQVLGKGGKAR 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI----RGKPLNPGVFQRYIRQL-RRY 253
           ++P+    R+A+  +Y L        I  P  R +    +G  ++P   +  ++    R 
Sbjct: 176 VLPVGRKAREALQAWYRL------RGIGNPRDRAVFITRQGNRISPQAVRLRVKAAGERE 229

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           LG  L    H LRHSFA+H+L +  DLR++Q +LGH  +STTQIYT+++ ++    +  +
Sbjct: 230 LGQHLHP--HMLRHSFASHVLESSQDLRAVQEMLGHADISTTQIYTHLDFQH----LAAV 283

Query: 314 YDQTHP 319
           YD  HP
Sbjct: 284 YDSAHP 289


>gi|188994249|ref|YP_001928501.1| putative integrase/recombinase XerD [Porphyromonas gingivalis ATCC
           33277]
 gi|188593929|dbj|BAG32904.1| putative integrase/recombinase XerD [Porphyromonas gingivalis ATCC
           33277]
          Length = 308

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 132/253 (52%), Gaps = 9/253 (3%)

Query: 51  AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE 110
           ++ T E I+    R++SY  ++ F+++     I  RS+ R +SG+KSF ++L   +    
Sbjct: 37  SYLTAENISF---REVSYENLQHFVAELYDLGISARSIARIISGVKSFFRFLVLEEYIEA 93

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
                +   +    LP  L  ++   L+  +             RN AIL +LY CGLR+
Sbjct: 94  DPTELLEGPRIGVHLPTVLTIEEVDRLIGAI-----DPAAQGAQRNRAILEILYSCGLRV 148

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPL 229
           SE  SL   N+  ++S LRI GKG K R+VP+  +    +  Y  D       L  +  +
Sbjct: 149 SELTSLKFSNLFLNESFLRIDGKGRKQRLVPMSETAITELKRYLSDPERPTPVLGQEEYV 208

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F   RGK ++  +    I++L    G+  S + HT RHSFATHLL  G +L++IQ +LGH
Sbjct: 209 FLSNRGKAISRIMVFVMIKKLAEEAGITKSISPHTFRHSFATHLLEGGANLQAIQLMLGH 268

Query: 290 FRLSTTQIYTNVN 302
             ++TT+IYT+++
Sbjct: 269 ENIATTEIYTHID 281


>gi|294791010|ref|ZP_06756168.1| putative tyrosine recombinase XerC [Scardovia inopinata F0304]
 gi|294458907|gb|EFG27260.1| putative tyrosine recombinase XerC [Scardovia inopinata F0304]
          Length = 322

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 153/313 (48%), Gaps = 33/313 (10%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E LK  +++L      +GLS+ T  +Y  D  Q L FL+        + +I +++   +R
Sbjct: 5   EKLKAYEDFLAE---NQGLSQHTRTAYRGDVDQCLHFLSLRG-----VDSIEKVNTDLLR 56

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            +++   ++++   SL R +  ++ F  Y     ++      ++   +   +LP  L +K
Sbjct: 57  MWMAYE-SRRLAKSSLARKIVAVRGFFAYTYVHGLSHSDPAADLGTPRLPQTLPSVLTKK 115

Query: 133 QALTLVDNV--LLHTSHETK----WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           QA  L+D    +  T  + +     ID RN AI+ LLY  G+R++E + L   +I     
Sbjct: 116 QASALMDKAEEVYQTDRKEQSGRTAIDLRNDAIVELLYATGIRVAELVGLNTGDIDFSSR 175

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---------------NLNIQ--LPL 229
           T+++ GKG+K R+VP       A+ E+ +     L               N + Q    +
Sbjct: 176 TVKVTGKGNKQRVVPFGAPASHALQEWLNRGRPSLVRKNSADGSSAGSKKNEDRQDSEAV 235

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F G RG  +N    ++ + +L    G+P   + H+LRHS ATHLL  G DLR +Q +LGH
Sbjct: 236 FVGSRGGRINQRQVRQVVHRLAAEAGVP-DISPHSLRHSAATHLLDGGADLREVQEMLGH 294

Query: 290 FRLSTTQIYTNVN 302
             L+TTQ YT+V+
Sbjct: 295 SSLATTQRYTHVS 307


>gi|307293405|ref|ZP_07573251.1| integrase family protein [Sphingobium chlorophenolicum L-1]
 gi|306881471|gb|EFN12687.1| integrase family protein [Sphingobium chlorophenolicum L-1]
          Length = 305

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 156/311 (50%), Gaps = 32/311 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECD---TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +L+ +  ERG S+ TL +Y  D     + +  L+  T+++I   T   +++ E+ A    
Sbjct: 11  FLEMMAAERGASRNTLLAYRADLTGAGEIVGGLSGATKDRIADLT---MAWAELAA---- 63

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    S+ R  S +++F  +L++  +  ++    +       SLP+ L+ ++  +L
Sbjct: 64  --------SSVARKSSALRAFYAFLEEEGLRPDNPSAALPRPVTRRSLPKILSTQEVDSL 115

Query: 138 VDNVL--LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
              +   L   H +  +D R SA++ LLYG GLR +E +SL  + +  D+  L ++GKG 
Sbjct: 116 FALIAGKLAVEHPSP-LDLRLSALIELLYGSGLRATELVSLPRRALASDRPFLILKGKGG 174

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           + R+VP+    R A+  +    P D      L LF   +       ++Q           
Sbjct: 175 RERLVPISDRARAAVAVWLHHVPAD-----SLWLFPSGKSHVSRIRLYQMVKALAAAAGI 229

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            P   + H LRH+FATHLL  G DLR++QS+LGH  + TTQIYT+V+S+     ++E+ +
Sbjct: 230 APERVSPHVLRHAFATHLLEGGADLRALQSMLGHADIGTTQIYTHVDSRR----LVELVN 285

Query: 316 QTHP--SITQK 324
             HP  S+T +
Sbjct: 286 SRHPLASMTHR 296


>gi|313836787|gb|EFS74501.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL037PA2]
 gi|314929805|gb|EFS93636.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL044PA1]
 gi|314972234|gb|EFT16331.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL037PA3]
          Length = 315

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 131/285 (45%), Gaps = 9/285 (3%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T++ Y  D   F+     + ++ +      ++  +++RA+++  R       +++R  S 
Sbjct: 38  TIRGYRADLIDFMGHAHSHGDDALG-----KIGTSQVRAWLADTRLAGASPATMQRRWSA 92

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
            + F ++     +        + +      LP  L   QA  ++D  +     +     A
Sbjct: 93  ARVFFRWAANEGLIDCDPTAALTSANVPKRLPATLGVDQARHILDGAVAQARSDETPQGA 152

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R++AIL +LYG GLR+ E   L   ++   + T+ + GKGDK R VP+      AI  + 
Sbjct: 153 RDAAILEVLYGGGLRVGELCGLDLGDVDRSRQTVIVTGKGDKERTVPMGTPALHAIDTWL 212

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                    +    LF G RG  ++  V +R +    R          H LRH+ ATHLL
Sbjct: 213 PRRAEWAGPDSGQALFLGARGGRIDQRVVRRVVHAHMRSEPDSPDLGPHGLRHAMATHLL 272

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
             G DLR++Q ILGH  L+TTQIYT+V+++     +   + Q HP
Sbjct: 273 EGGADLRTVQDILGHESLATTQIYTHVSTER----LRTAFRQAHP 313


>gi|262198804|ref|YP_003270013.1| tyrosine recombinase XerD [Haliangium ochraceum DSM 14365]
 gi|262082151|gb|ACY18120.1| tyrosine recombinase XerD [Haliangium ochraceum DSM 14365]
          Length = 299

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 150/300 (50%), Gaps = 17/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + Q+L++ER LS  T++ Y  D  +   FLA      I + ++R     +    ++    
Sbjct: 14  YFQHLKVERNLSVHTIEGYSRDLARLRRFLA--ERACIAVASVRPADLADYLLALA---- 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            ++G RS  R+ + I+ + ++L   +        ++   +    LP  + E QA+T    
Sbjct: 68  DELGARSRARASAAIRGWFRFLVSERYLERDPAEHLATPRALRPLPVVIGE-QAVT---- 122

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL     T     R+ A++  LY  GLR+SE + L   ++  D   LR+ GKG K R+V
Sbjct: 123 ELLAAPPTTTPRGLRDGAMIETLYATGLRVSELVGLLMADVHLDPGYLRVLGKGRKQRLV 182

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           PL       I  Y          N + P LF    GKP+    F + +++  R +G+   
Sbjct: 183 PLGEMACARIEAYVSGARGSFLKNPKQPALFLTGHGKPMTRQGFWKLLKRYARGVGIA-E 241

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + H LRHSFATHLL +G DLR++Q++LGH  +STTQIYT+V+       ++ +Y++ HP
Sbjct: 242 ISPHKLRHSFATHLLEHGADLRAVQAMLGHADISTTQIYTHVSRAR----LVALYEKHHP 297


>gi|255262389|ref|ZP_05341731.1| tyrosine recombinase XerD [Thalassiobium sp. R2A62]
 gi|255104724|gb|EET47398.1| tyrosine recombinase XerD [Thalassiobium sp. R2A62]
          Length = 310

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 124/233 (53%), Gaps = 16/233 (6%)

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q +   +  R LS +K   ++  +     ++  + ++   K   LP+ L+ ++    VD
Sbjct: 65  AQGLAKSTRARRLSAVKQLYRFAFEESWRADNPAIQIKGPGKDKRLPKTLSVEE----VD 120

Query: 140 NVLLHTSHETKWIDAR--NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            +L  +    K +D R  N+ ++ LLY  G+R++E +SL       D   L I+GKGDK 
Sbjct: 121 RLLEASRTSAKSVDDRLRNTCLMELLYATGMRVTELVSLPVSATRGDPRMLLIRGKGDKE 180

Query: 198 RIVPLLPSVRKAILEY---YDLCPFDLNLNIQLPLFRGI---RGKP--LNPGVFQRYIRQ 249
           R+VPL P  R A+ ++   +D    D  +    P  R +   RGK   L    F   I++
Sbjct: 181 RMVPLSPPARTALADWIKRWDALQ-DAAVKAGKPRARHLFPSRGKDGHLTRHRFYLMIKE 239

Query: 250 LRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                G+ P   T HTLRH+FATHLL+NG DLRSIQ++LGH  ++TT+IYT+V
Sbjct: 240 FAVAGGVVPSKVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHV 292


>gi|239906838|ref|YP_002953579.1| tyrosine recombinase XerD [Desulfovibrio magneticus RS-1]
 gi|239796704|dbj|BAH75693.1| tyrosine recombinase XerD [Desulfovibrio magneticus RS-1]
          Length = 285

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 148/315 (46%), Gaps = 46/315 (14%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTE--EKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           + RGLS+ ++ +Y  D   FLIFL  +    E  T +T+          ++   R++ + 
Sbjct: 1   MARGLSEHSIAAYSTDIVGFLIFLNDHGAALEATTDETVLL--------YLMHLRSRGLA 52

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            RSL R LS ++ F  +       + S    + N K    LP  L+ ++   L+D     
Sbjct: 53  SRSLARHLSALRGFFAFAADESWLSASPAALIENPKLPRLLPDVLSREEVTRLLDAPDTA 112

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           T      +  R+  +L LLY  GLR+SE + LT  +       LR+ GKG K R+ P   
Sbjct: 113 TP-----LGYRDRTMLELLYAAGLRVSELVGLTLADFDAQAGLLRVFGKGSKERVTP--- 164

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------QRYIRQLRRY- 253
            +    +E+         L+  L   RG  G P +  VF          Q   + ++RY 
Sbjct: 165 -IHSLAMEF---------LSTYLSSIRGAFG-PKDQHVFLNRSGKGLTRQAVWKGIKRYA 213

Query: 254 LGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           L   +ST  + H+LRHSFATHLL  G DLR++Q +LGH  +S T+IYT+V +      ++
Sbjct: 214 LAAQVSTRISPHSLRHSFATHLLDGGADLRTVQMLLGHADISATEIYTHVQAGR----LL 269

Query: 312 EIYDQTHPSITQKDK 326
            ++   HP    +DK
Sbjct: 270 AVHRAHHPRSRDRDK 284


>gi|212550782|ref|YP_002309099.1| site-specific recombinase XerC [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549020|dbj|BAG83688.1| site-specific recombinase XerC [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 299

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 154/300 (51%), Gaps = 16/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L  ER  S  TL++Y  D  QF  F+  +  E   ++TI   + + IR +I     
Sbjct: 13  FLCHLRYERNYSVRTLKTYCDDLVQFERFV--FCSEGFDMRTI---TSSVIREWIVFLMD 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +    RS+ R LS ++SF +YL +      + +  +  ++    LP  + +++  TL   
Sbjct: 68  RNYSPRSVNRKLSTLRSFFRYLYRNGQIESNPVKGIVGVRTGRPLPYFVRDREMNTL--- 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL  S    + D R+  IL + Y  G+R SE + L  ++I  +   +R+ GKG+K R++
Sbjct: 125 -LLDLSKGEGFEDERDRTILEVFYSTGIRCSELVGLNDEDIDFESCLIRVTGKGNKQRLI 183

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ-LRRYLGLPLS 259
           P   ++ + IL YY     +   ++    F    G+ LN  +  R +++ L     LP  
Sbjct: 184 PFSKTL-EEILSYYKTIRDETIWDVSKAFFVREDGRSLNYNIVYRIVKKRLSDIPNLP-K 241

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + H LRH+FAT +L+NG +L +++ +LGH  L++T+IYT++  +     + + Y Q HP
Sbjct: 242 RSPHVLRHTFATSMLNNGANLNAVKELLGHSSLASTEIYTHLTFEE----LKKTYKQAHP 297


>gi|256379436|ref|YP_003103096.1| tyrosine recombinase XerD [Actinosynnema mirum DSM 43827]
 gi|255923739|gb|ACU39250.1| tyrosine recombinase XerD [Actinosynnema mirum DSM 43827]
          Length = 299

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 140/302 (46%), Gaps = 16/302 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L +ERG ++ TL SY  D R++L  L       + +  + +    +   F++  R 
Sbjct: 13  YLDHLAVERGAARNTLDSYARDLRRYLAHL---ESAGLGLDAVTEAVVGD---FLAGLRE 66

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +   S  R+L  ++   ++  +  +T      +++       LP+AL     L L+D 
Sbjct: 67  SGLAASSAARTLVAVRGLHRFAHREGLTAADPAKDVQPPAAPRRLPKALPVADVLRLLD- 125

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
               T+ +T     R+ A+L LLY  G RISE + L   ++   + T  + GKG K R+V
Sbjct: 126 ----TAGDTPAA-LRDRALLELLYSTGARISEVVGLDVDDVDAAERTALLDGKGGKQRVV 180

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+      A+  Y       L       LF   RG  L+     + ++      G+    
Sbjct: 181 PVGRPALAAVEAYLVRARPVLAKRGGPALFLNARGGRLSRQSAWQVLKTAAERAGVAAEV 240

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQ+YT V        + E+Y   HP 
Sbjct: 241 SPHTLRHSFATHLLEAGADVRVVQELLGHASVTTTQVYTLVTVTT----LREVYATAHPR 296

Query: 321 IT 322
            T
Sbjct: 297 AT 298


>gi|197262705|ref|ZP_03162779.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197240960|gb|EDY23580.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
          Length = 300

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 153/311 (49%), Gaps = 17/311 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +    L ++   +L+ L +ER LS +TL +Y+   RQ    +A   E    +++ +Q   
Sbjct: 1   MTDVALSQDVSRFLRYLGVERQLSPITLLNYQ---RQLDAIIALAGE--TGLKSWQQCDA 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R+F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ 
Sbjct: 56  AIVRSFAVRSRRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKN 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++      L+D  L         +  R+ A+L ++YG GLR+SE + L  +++  D   +
Sbjct: 116 IDVDDVNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEV 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +P+  +    I  + DL    L  + +  LF    GK ++    Q+   
Sbjct: 170 WVMGKGSKERRLPIGRNAVTWIEHWLDLR--GLFASDEEALFLSKLGKRISVRNVQKRFA 227

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++   
Sbjct: 228 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 284

Query: 309 WMMEIYDQTHP 319
            +  +YD  HP
Sbjct: 285 -LASVYDAAHP 294


>gi|328907661|gb|EGG27425.1| site-specific tyrosine recombinase XerC [Propionibacterium sp. P08]
          Length = 310

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 131/285 (45%), Gaps = 9/285 (3%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T++ Y  D   F+     + ++ +      ++  +++RA+++  R       +++R  S 
Sbjct: 33  TIRGYRADLIDFMGHAHSHGDDALG-----KIGTSQVRAWLADTRLAGASPATMQRRWSA 87

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
            + F ++     +        + +      LP  L   QA  ++D  +     +     A
Sbjct: 88  ARVFFRWAANEGLIDCDPTAALTSANVPKRLPATLGVDQARHILDGAVAQARSDETPQGA 147

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R++AIL +LYG GLR+ E   L   ++   + T+ + GKGDK R VP+      AI  + 
Sbjct: 148 RDAAILEVLYGGGLRVGELCGLDLGDVDRSRQTVIVTGKGDKERTVPMGTPALHAIDTWL 207

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                    +    LF G RG  ++  V +R +    R          H LRH+ ATHLL
Sbjct: 208 PRRAEWAGPDSGQALFLGARGGRIDQRVVRRVVHAHMRSEPDSPDLGPHGLRHAMATHLL 267

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
             G DLR++Q ILGH  L+TTQIYT+V+++     +   + Q HP
Sbjct: 268 EGGADLRTVQDILGHESLATTQIYTHVSTER----LRTAFRQAHP 308


>gi|313901986|ref|ZP_07835402.1| integrase family protein [Thermaerobacter subterraneus DSM 13965]
 gi|313467775|gb|EFR63273.1| integrase family protein [Thermaerobacter subterraneus DSM 13965]
          Length = 380

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 148/317 (46%), Gaps = 36/317 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L +L +ERGLS  T+++Y  D   +L FL    E  +    +  +S  ++R +++  
Sbjct: 27  EAYLDHLRLERGLSPRTVEAYAGDLAGWLQFLGL--EPPVGAAALAGVSGRDLRRWLAHL 84

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   S+ R L+ ++   +Y  +      S    +   +    LPR    ++A  L+
Sbjct: 85  EERGLARASVARKLAAVRGLFRYAVREGWLAASPAARLATPRLRRRLPRVYTPEEAQALL 144

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +     + H    +  R+ AIL LLYGCGLR++E   L   ++  +   LR+ GKG K R
Sbjct: 145 EAAA--SGHGPAAL--RDRAILELLYGCGLRVAELSGLDLDDVDLEGGWLRVYGKGGKER 200

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF-RGIRGKPLNPGVFQ------------- 244
           I+PL   V  A+  Y         L    P F  G R +P  P   Q             
Sbjct: 201 ILPLAGPVAAALRAY---------LEEGRPGFLEGRRHRPCRPADAQAVFLNRWGGRLSP 251

Query: 245 RYIRQLRRYLGLP---LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R I+ + R +G     L    H LRH+FATHLL  G  LR++Q +LGH  L+ TQ+YT+V
Sbjct: 252 RGIQAIVRRVGAVVARLQAHPHLLRHTFATHLLDGGAGLRAVQELLGHASLAATQVYTHV 311

Query: 302 NSKNGGDWMMEIYDQTH 318
           +       +  +Y Q H
Sbjct: 312 SRAR----LWAVYQQAH 324


>gi|218282387|ref|ZP_03488669.1| hypothetical protein EUBIFOR_01251 [Eubacterium biforme DSM 3989]
 gi|218216673|gb|EEC90211.1| hypothetical protein EUBIFOR_01251 [Eubacterium biforme DSM 3989]
          Length = 300

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 95/312 (30%), Positives = 144/312 (46%), Gaps = 18/312 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL    +++   L + +  SK T+QSY  D     ++L F  + KI+      +S  +I 
Sbjct: 2   ELKDAFEDYHLYLSVVQRKSKKTVQSYLHDID---VYLDFLKDRKIS--KCENISVLDIE 56

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           AF+       +   SL R ++ I SF   +       +   L +  +K S  LP  L+  
Sbjct: 57  AFLDFYAEDHVA-SSLNRMIASIHSFHLQISTMHPEIKDVSLLIHGMKSSKHLPVYLS-- 113

Query: 133 QALTLVDNVL-LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
                VD V  + +S +   ID  N  IL +LY CGLR+SE   L   ++   +  L+++
Sbjct: 114 -----VDEVKKVFSSFQDNEIDQYNKTILVVLYSCGLRVSELCDLKLNDVHLTEQILKVK 168

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKGDK RI+P+       +  Y D   F  ++      F    G           I+Q  
Sbjct: 169 GKGDKERIIPISSYCVSQMKYYLDSIRFVWDVKNVSYFFVNRLGHICTRQYVHLMIKQKV 228

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             L L    +AH+ RHSFATHLL    DLR +Q +LGH  +STTQIYT++  K     + 
Sbjct: 229 NELNLNPKISAHSFRHSFATHLLDGDADLRIVQELLGHSNISTTQIYTHIQDKR----LS 284

Query: 312 EIYDQTHPSITQ 323
            +YD+    I +
Sbjct: 285 SVYDRCFQKIEK 296


>gi|260578657|ref|ZP_05846565.1| integrase/recombinase XerD [Corynebacterium jeikeium ATCC 43734]
 gi|258603154|gb|EEW16423.1| integrase/recombinase XerD [Corynebacterium jeikeium ATCC 43734]
          Length = 299

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 144/299 (48%), Gaps = 14/299 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++++L+ ER +S  TL +Y+ D  ++L++L     +++T   I           +  R+ 
Sbjct: 13  YIRHLKTERDVSVHTLSNYQRDLDRYLVWLGSKALQEVTATDIED-------HLVYLRKD 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +   S  R L+ I+    +             ++    +  S+P+AL+  Q   L++ 
Sbjct: 66  LNLAASSAARGLAAIRGLHSFAHTDGRLAFDVAADVPTPSQGGSIPKALSLAQVEALLNA 125

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           V          I+ R+ A+L +LY  G RI+E L L   ++  +Q  L ++GKG K RIV
Sbjct: 126 VP--AGDGASQINIRDRALLEMLYSTGARITELLDLDVDDLDREQRVLLVRGKGGKERIV 183

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           PL     +A+  Y       LN      LF   RG  L      + + Q     GL    
Sbjct: 184 PLGRPALQAVERYLVRARPSLNKKGSPALFLNNRGARLGRQSGFKIVSQAAEAAGLE-HV 242

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           + H+LRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V+ ++    + EI+  +HP
Sbjct: 243 SPHSLRHSFATHLLEGGADIRVVQELLGHASVATTQIYTKVSPEH----LREIWASSHP 297


>gi|149278899|ref|ZP_01885034.1| integrase [Pedobacter sp. BAL39]
 gi|149230518|gb|EDM35902.1| integrase [Pedobacter sp. BAL39]
          Length = 294

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 152/302 (50%), Gaps = 18/302 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L+ E+  S  T+QSYE D  QF  +L+   E       +      ++R ++     
Sbjct: 6   FLTYLKHEKRYSPHTIQSYETDLLQFEAYLSDVYE-----LALPDAGRAQVRDYMVWLME 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           ++I +RS+ R LS ++SF K+L        S +  +R  K  N LP  + + +   L+D+
Sbjct: 61  RQIAERSVARKLSALRSFYKHLVAGGAIASSPMALVRAPKVPNRLPVFVEDHKLDQLLDS 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             +       +   R+  ++ +L+G G+R+SE +++  Q++    S++++ GK +K RI+
Sbjct: 121 TEIFND---SFSSVRDKLVIEMLFGTGMRVSELVNVKLQDVDFYASSVKVLGKRNKERII 177

Query: 201 PL---LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           P+   L S+ K  ++   L  F+   N    LF   +G  +  G   + +     Y+   
Sbjct: 178 PIGKTLTSLLKVYIDTKTLQDFN---NKTEYLFVTNKGAAVTRGFIYKIVTSYLTYVSTQ 234

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRHS+AT LL+ G DL +I+ +LGH  L+ TQ+YT+    N  + +  IY Q 
Sbjct: 235 DKKSPHVLRHSYATSLLNRGADLNAIKELLGHASLAATQVYTH----NSIERLKSIYKQA 290

Query: 318 HP 319
           HP
Sbjct: 291 HP 292


>gi|296269467|ref|YP_003652099.1| tyrosine recombinase XerD [Thermobispora bispora DSM 43833]
 gi|296092254|gb|ADG88206.1| tyrosine recombinase XerD [Thermobispora bispora DSM 43833]
          Length = 313

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 153/315 (48%), Gaps = 31/315 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L +L +ERGLS  T+ SY  D R++L  L     +   ++T+ ++   ++ AF++  R
Sbjct: 11  SYLNHLAVERGLSANTVASYRRDLRRYLDHL-----KARGLRTLAEVREDDVAAFLTALR 65

Query: 80  TQKIGDRSL-----KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
                  +L      R+ S ++   ++  +  +T       +R  ++   LP+A++ ++ 
Sbjct: 66  EGDADHPALVASSAARAFSAVRGLHRFALREGLTRHDPAHAIRPPRQLRRLPKAISVEE- 124

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST------L 188
              V+ ++     +   +  RN A+L LLYG G RISEA+ L   ++     T      +
Sbjct: 125 ---VERLIAACGPDGSPLTLRNRALLELLYGTGARISEAVGLAVDDVTTGAPTDPARDQV 181

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ----LPLFRGIRGKPLNPGVFQ 244
           R++GKG + RIVPL    R+A+  Y  L      L  Q      LF   RG  L      
Sbjct: 182 RLRGKGGRTRIVPLGRYARQALDAY--LVRARPQLAAQGRGTSALFLNARGGRLTRQGAW 239

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             ++      GL    + H LRHSFATHLL  G D+R +Q +LGH  ++TTQ+YT V   
Sbjct: 240 EVLQAAAERAGLS-GVSPHMLRHSFATHLLDGGADVRVVQELLGHASVATTQVYTLVTV- 297

Query: 305 NGGDWMMEIYDQTHP 319
              D + E+Y   HP
Sbjct: 298 ---DRLREVYAAAHP 309


>gi|90581049|ref|ZP_01236849.1| tyrosine recombinase [Vibrio angustum S14]
 gi|90437745|gb|EAS62936.1| tyrosine recombinase [Vibrio angustum S14]
          Length = 301

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 150/295 (50%), Gaps = 16/295 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  ER LS  T Q+Y+   RQ         E  +++   +Q+    +R   SK     + 
Sbjct: 17  LRSERELSLHTQQNYK---RQLTRVAEQLVE--LSVDNWQQVDAGWVRQIASKGMRDGLK 71

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             SL   LS ++SF  +L  + +   +    +   +K+  LP+ L+  +   L+D     
Sbjct: 72  ASSLAMRLSALRSFFDFLVHQNVLKANPAKGVAAPRKARPLPKNLDVDEMNQLLD----- 126

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
             ++   +  R+ A++ L+YG GLR++E + +  ++I   +  LR+ GKGDK R+VP   
Sbjct: 127 -VNDDDPLAIRDRAMMELMYGAGLRLAELVGIDVRHISLSKGDLRVIGKGDKERVVPFSG 185

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             R+ I ++  L   ++    +  LF    G  ++    Q+ + +  +   +      H 
Sbjct: 186 LAREWIAKWLKLRD-NIAQAEEPALFVSKLGTRISTRNVQKRMAEWGQKQAVSSHINPHK 244

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++    + ++YD+ HP
Sbjct: 245 LRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LAKVYDEAHP 295


>gi|260907246|ref|ZP_05915568.1| phage integrase family protein [Brevibacterium linens BL2]
          Length = 319

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 144/307 (46%), Gaps = 26/307 (8%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFY----TEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           R +S  T ++Y  D   F    A       + +     +  +   ++R+++         
Sbjct: 21  RDVSAHTSRAYVADVSDFFDHTAHAPGAGDKSRAAELQVSDIDLNDLRSWLITLDDAGAA 80

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD-NVLL 143
             ++ R ++ +KSF  Y   +   + +    +R  KK + LP  L  +QA  LV     +
Sbjct: 81  KSTVARKIAAVKSFFAYCVNQHGLSNNPAARLRTPKKDSRLPTVLKPQQAADLVSRQRTV 140

Query: 144 HTSHE-------TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           HT  +       TKW+  R++AIL +LY   +R+SE   L   ++   +S + + GKG+K
Sbjct: 141 HTEADNSDPIEATKWV--RDAAILEMLYATAVRVSELTGLNRGDVDHQRSMITVLGKGNK 198

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRYLG 255
            R VP     + A+ ++  L     + +    LF G+RG  +      R +R+L  RY  
Sbjct: 199 ERRVPYGKPAQTALQKWLSLRDTFASESSGDALFLGVRGGRIG----ARQVRELVHRYGA 254

Query: 256 LPLSTT---AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              S      H LRHS ATH+L  G DLR IQ +LGH  +S+TQIYT+V+ +     + E
Sbjct: 255 ADPSAPDIGPHGLRHSAATHMLDGGADLRQIQELLGHSTMSSTQIYTHVSMQR----LQE 310

Query: 313 IYDQTHP 319
            Y Q HP
Sbjct: 311 TYRQAHP 317


>gi|329297033|ref|ZP_08254369.1| site-specific tyrosine recombinase XerC [Plautia stali symbiont]
          Length = 303

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 155/311 (49%), Gaps = 27/311 (8%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL   + +L+ L++ER LS LT ++Y+   RQ    +A   +  IT  +  QL   ++R+
Sbjct: 7   LLPAVEGFLRYLKVERQLSPLTQKNYQ---RQLQALIAMADDMHITAWS--QLEPAQVRS 61

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             ++ R   +G  SL   +S ++SFL +   + + + +    +   + +  LP+ ++   
Sbjct: 62  LAARSRRGGLGASSLALRMSALRSFLDWQVSQGMLSANPAKGIATPRNARHLPKNMD--- 118

Query: 134 ALTLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               VD V      +     A R+ A+L  +YG GLR++E + +  +++  +   + ++G
Sbjct: 119 ----VDEVSQLLDIDLDDPLAVRDRAMLETMYGGGLRLAELVGIDCRHLDLESGEVWVRG 174

Query: 193 KGDKIRIVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           KG K R VP+  +    +  +  L     P D        +F   RG  ++    Q+   
Sbjct: 175 KGSKERRVPIGGTAVTWLQHWLPLRNSFAPQDD------AVFVSTRGSRISARNVQKRFA 228

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     G+      H LRHSFATHLL + GDLR++Q +LGH  LSTTQIYT+++ ++   
Sbjct: 229 EWGIKQGVASHIHPHKLRHSFATHLLESSGDLRAVQELLGHVNLSTTQIYTHLDFQH--- 285

Query: 309 WMMEIYDQTHP 319
            +  +YD  HP
Sbjct: 286 -LASVYDAAHP 295


>gi|18479027|gb|AAL73390.1|AF416734_1 site-specific recombinase [Pseudomonas fluorescens]
          Length = 298

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 148/306 (48%), Gaps = 22/306 (7%)

Query: 17  ERQ--NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ERQ   + ++L  ER +S  TL +Y  D  + + +      +K  I +   L    +R+ 
Sbjct: 2   ERQLDAYCEHLRSERQVSPHTLSAYRRDLEKVVGWC-----QKQNIGSWAALDIQRLRSL 56

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I++   Q    RSL R LS ++    YL +  +        +   K    LP+ LN  +A
Sbjct: 57  IARLHQQGQSSRSLARLLSAVRGLYHYLNREGLCDHDPATGLAPPKGERRLPKTLNTDRA 116

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           L L++  +     E  ++  R+ AIL L Y  GLR+SE   L    +      +++ GKG
Sbjct: 117 LQLLEGAV-----EDDFLAQRDQAILELFYSSGLRLSELTGLNLDQLDLADGMVQVLGKG 171

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRY 253
            K R++P+    R+A+ ++  L    L       +F   +GK L P   Q  ++    R 
Sbjct: 172 SKTRLLPVGRKAREALEQWLALRA--LTNPADDAVFVSQQGKRLGPRAIQLRVKAAGERE 229

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           LG  L    H L HSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +
Sbjct: 230 LGQNLHP--HML-HSFASHLLESSQDLRAVQELLGHSDIKTTQIYTHLDFQH----LATV 282

Query: 314 YDQTHP 319
           YD  HP
Sbjct: 283 YDSAHP 288


>gi|291457690|ref|ZP_06597080.1| tyrosine recombinase [Bifidobacterium breve DSM 20213]
 gi|291380743|gb|EFE88261.1| tyrosine recombinase [Bifidobacterium breve DSM 20213]
          Length = 339

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 149/323 (46%), Gaps = 47/323 (14%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +++  L   RGLS  TL++Y CD    L        E   + ++ +++  ++R++++   
Sbjct: 9   SFISYLRANRGLSANTLKAYRCDIEACLHLF-----ELRGVVSLNEITLNDLRSWMATE- 62

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           +      S+ R    ++ F  +  +  +   +    +      N+LP  L E QA  L+D
Sbjct: 63  SHNHARSSMARKTVAVRGFFAWGYEHGVVGVNPAATLMTPSIPNTLPTVLTESQAEQLLD 122

Query: 140 -----------------NVLLHTSHETKWIDA----------RNSAILYLLYGCGLRISE 172
                            +      H  +   A          R+ AIL LLY  G+R++E
Sbjct: 123 CAEHSEALQRKNRDISNDSSADGPHSARGRSADRAREIAERQRDVAILELLYATGIRVAE 182

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQ--LP- 228
            +SL  +++     T+R+ GKG+K R+VP      +A+ ++ D   P    L I+  +P 
Sbjct: 183 LVSLDIRDVDFSNRTVRVTGKGNKQRVVPFGLPAEQALQDWIDYGRPALARLAIEKAVPP 242

Query: 229 ---------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
                    LF G+RGK LN  V +  + +  R  G+P   + H LRHS ATH+L  G D
Sbjct: 243 NGISSDEGALFLGMRGKRLNQRVAREIVHKAAREAGVP-DISPHALRHSAATHMLDGGAD 301

Query: 280 LRSIQSILGHFRLSTTQIYTNVN 302
           LR +Q +LGH  L TTQ YT+V+
Sbjct: 302 LREVQEMLGHSSLKTTQRYTHVS 324


>gi|296104556|ref|YP_003614702.1| site-specific tyrosine recombinase XerD [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295059015|gb|ADF63753.1| site-specific tyrosine recombinase XerD [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 298

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 158/304 (51%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +E+ L++ TL +Y  D    + +LA      +++++ +     +++A + +R
Sbjct: 9   EQFLDALWLEKNLAQNTLSAYRRDLTMLVEWLA---HRGLSLESAQS---DDLQALLGER 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   ++L + KI  +     + + K    LP+ L+E Q   L+
Sbjct: 63  MEGGYKATSSARLLSAMRRLFQHLYREKIRADDPSALLASPKLPQRLPKDLSEAQVERLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            +  +        ++ R+ A+L LLY  GLR+SE + LT  +I   Q  +R+ GKG+K R
Sbjct: 123 QSPAVDLP-----LELRDKAMLELLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL       +  Y +   P+ LN ++I + LF   R + +    F   I+      G+
Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYATLAGI 236

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292

Query: 316 QTHP 319
           Q HP
Sbjct: 293 QHHP 296


>gi|324115089|gb|EGC09054.1| tyrosine recombinase XerD [Escherichia fergusonii B253]
          Length = 298

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 156/304 (51%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +E+ L++ TL +Y    R   + + +     +T+ T +     +++A +++R
Sbjct: 9   EQFLDALWLEKNLAENTLNAYR---RDLSMMVEWLHHRGLTLATAQS---DDLQALLAER 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL +     +    ++ + K    LP+ L+E Q   L+
Sbjct: 63  LEGGYKATSSARLLSAVRRLFQYLYRENFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG+K R
Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL       +  Y +   P+ LN ++I + LF   R + +    F   I+      G+
Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292

Query: 316 QTHP 319
           Q HP
Sbjct: 293 QHHP 296


>gi|119717469|ref|YP_924434.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119538130|gb|ABL82747.1| tyrosine recombinase XerC subunit [Nocardioides sp. JS614]
          Length = 312

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 154/319 (48%), Gaps = 23/319 (7%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LPE ++  L     ++ ++L  ER LS+ T+++Y  D    L   +   + +     +R 
Sbjct: 10  LPEAMARAL----GDYERHLAAERDLSEHTVRAYIGDVAGLLEHASRLGQTEPGDLDLRT 65

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           L     R++++K++T      +L R  +  + F  +L +   T      ++   K   +L
Sbjct: 66  L-----RSWLAKQQTMGRSRTTLARRATAARVFTAWLARTGRTPLDAGASLGAPKAHRTL 120

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P  L   +A  LV   + H    +  +  R+ A+L LLY  G+R+ E + L   ++  ++
Sbjct: 121 PPVLRTDEAADLVRAAVEHADDGSP-VGLRDVAMLELLYATGIRVGELVGLDIDDLDRER 179

Query: 186 STLRIQGKGDKIRIVPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           + +R+ GKG K R VP   P+ R          P          LF G RG+ ++    Q
Sbjct: 180 NVVRVLGKGRKERTVPFGRPAARAVDFWLKHGRPLLAVEGSGAALFLGARGRRID----Q 235

Query: 245 RYIRQL--RRYLGLPLSTT--AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           R +R +  RR   +P +     H LRH+ ATHLL  G DLRS+Q +LGH  L+TTQIYT+
Sbjct: 236 RAVRTVVHRRIAEVPGAPDIGPHGLRHTAATHLLEGGADLRSVQELLGHASLATTQIYTH 295

Query: 301 VNSKNGGDWMMEIYDQTHP 319
           V+++     +   Y Q HP
Sbjct: 296 VSTER----LRRAYQQAHP 310


>gi|121604082|ref|YP_981411.1| tyrosine recombinase XerD [Polaromonas naphthalenivorans CJ2]
 gi|120593051|gb|ABM36490.1| tyrosine recombinase XerD subunit [Polaromonas naphthalenivorans
           CJ2]
          Length = 300

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 155/303 (51%), Gaps = 20/303 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE---IRAFISK 77
           ++  L +E GLS+ TL +Y  D   +  +L  + +E    Q  R+L  T+   ++A+ S 
Sbjct: 12  FIDALWLEDGLSRNTLAAYRRDLSLYAGWL--HAKE----QQHRKLDDTDEDDLKAYFSF 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R L+  K + ++  +  +      L +++ K++  +P+ ++E Q    
Sbjct: 66  RHAATKAT-SANRCLTVFKRYFRWALRENLIAADPTLKLQSAKQALRVPKVMSEAQ---- 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           VD +L     +T  +  R+ A+L L+Y  GLR+SE + L   ++  ++  LR+ GKG   
Sbjct: 121 VDALLAAPDDDTP-LGLRDRAMLELMYASGLRVSELVGLKTFHVGLNEGALRVMGKGSAE 179

Query: 198 RIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP     R+ I+ Y  +  P  L       LF    G  ++  +F   +++     G+
Sbjct: 180 RLVPFGQVAREWIVRYIAESRPAILGGQQTDDLFVTGHGHGMSRVMFWMLVKKYALLAGI 239

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR++Q +LGH  +STT IYT+V  +     +  I+ +
Sbjct: 240 HSPLSPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVARER----LKSIHAE 295

Query: 317 THP 319
            HP
Sbjct: 296 HHP 298


>gi|262404730|ref|ZP_06081285.1| site-specific recombinase XerD [Vibrio sp. RC586]
 gi|262349762|gb|EEY98900.1| site-specific recombinase XerD [Vibrio sp. RC586]
          Length = 302

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 153/304 (50%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  +  ERGL++ T+ SY  D  + L ++A   + +  +  I      E + ++++ 
Sbjct: 13  EQFLDAMWFERGLAENTVASYRNDLSKLLGWMA---QHQYRLDFISFSGLQEYQIWLTE- 68

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R LS I+   +YL + K+  +     + + K    LP+ L E Q     
Sbjct: 69  --QDYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLISPKLPTRLPKDLTEAQV---- 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL        I+ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG K R
Sbjct: 123 -EALLSAPDPQTPIELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVIGKGGKER 181

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VP+  +  + I E +      L L  Q    +F   RG+ +    F   I+       +
Sbjct: 182 LVPMGENAVEWI-ETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAEI 240

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            +   + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + ++++
Sbjct: 241 DVEQLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHN 296

Query: 316 QTHP 319
           + HP
Sbjct: 297 EHHP 300


>gi|147918869|ref|YP_687405.1| integrase [uncultured methanogenic archaeon RC-I]
 gi|110622801|emb|CAJ38079.1| integrase [uncultured methanogenic archaeon RC-I]
          Length = 278

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/285 (31%), Positives = 140/285 (49%), Gaps = 34/285 (11%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T++ Y     +F  +     E  +  + +R L+Y      +SK     +        LS 
Sbjct: 25  TIRQYGMILNRFYKYTGKQPEMVVRPEIVRYLNYLMFEKHLSKTTVANV--------LSV 76

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +KSF  ++      + +    + N+K     P  L   +   L+D            ID 
Sbjct: 77  LKSFYSFMLDNGYVSSNPTRGINNIKLDKKAPVYLTVSEMNDLLDTA----------IDT 126

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+  I+ LLY  G+R+SE +++  ++I  D+ T+++ GKG K RIV L+P     + E Y
Sbjct: 127 RDRIIVRLLYATGVRVSELVNIRKKDIDFDRCTIKVFGKGAKERIV-LVPET--VVKEMY 183

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           D   +  +L+    LF       L P   QR I+QL R   +  + T H LRHSFATH+L
Sbjct: 184 D---YAASLSNDDRLFN------LTPRTVQRDIKQLARRAKINKNVTPHKLRHSFATHML 234

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            NGG++ +IQ +LGH  L+TTQIYT+ N     D + E+Y +THP
Sbjct: 235 QNGGNVVAIQKLLGHSSLNTTQIYTHYNV----DELKEMYGRTHP 275


>gi|254492199|ref|ZP_05105373.1| tyrosine recombinase XerC [Methylophaga thiooxidans DMS010]
 gi|224462524|gb|EEF78799.1| tyrosine recombinase XerC [Methylophaga thiooxydans DMS010]
          Length = 302

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 153/313 (48%), Gaps = 21/313 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S EL +    +L  L  +R LS  T+ +Y  D  Q + F      +   +     +   
Sbjct: 1   MSNELEQHANIFLDYLAQQRRLSHHTVNNYRRDLTQLIDFC-----QGQELSHWHSVKPA 55

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++R FI+    + +  R+++R LS  +S  +YL ++ +   +    ++  K    LP  L
Sbjct: 56  DLRQFIAFLHRKGLASRTIQRMLSATRSLYQYLIRQGLAETNPAQAVQAPKAEKRLPSTL 115

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  Q      N LL  +    ++  R+ AI+ L Y  GLR++E  +L  ++I      + 
Sbjct: 116 DVDQM-----NALLDQTQADTFVACRDRAIMELFYSSGLRLAELATLDLRDIDFGDQLVH 170

Query: 190 IQGKGDKIRIVPLLPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           + GKG+K R+ P+     KA+   LE  D   F      Q  +F   +G+ L     Q+ 
Sbjct: 171 VTGKGNKDRVCPVGAVAIKALQDWLEKRDQTGF----FDQPAVFITQQGRRLGMRSIQKR 226

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +    +  G+      H LRH+FA+H+L + GDLR++Q +LGH  +STTQIYT+V+ ++ 
Sbjct: 227 LSFWGKKQGISDRVHPHRLRHAFASHMLESSGDLRAVQELLGHSDISTTQIYTHVDFQH- 285

Query: 307 GDWMMEIYDQTHP 319
              + ++YD  HP
Sbjct: 286 ---LAKVYDSAHP 295


>gi|84490143|ref|YP_448375.1| site-specific recombinase/integrase [Methanosphaera stadtmanae DSM
           3091]
 gi|84373462|gb|ABC57732.1| predicted site-specific recombinase/integrase [Methanosphaera
           stadtmanae DSM 3091]
          Length = 316

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/246 (35%), Positives = 122/246 (49%), Gaps = 31/246 (12%)

Query: 83  IGDRSLKRS---LSGIKSFLKYLKKRKITTESNIL-------------------NMRNLK 120
           + DR +K     L   K +L+YLK+ K  + + I                     ++  K
Sbjct: 47  LSDRKIKDEKGMLRAFKRYLQYLKREKEVSTNYIYLVTVVLKKFFEFAEIHIYEEIKAPK 106

Query: 121 KSNSLPRALNEKQALTLV---DNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSL 176
           ++ SLP++LNE++   L+   DN         + I   RN  IL LLY  GLR+SE   L
Sbjct: 107 RTKSLPKSLNEQEVYDLIHAKDNEYDPEKTNPQNITRLRNKLILTLLYSTGLRVSELTKL 166

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
               I +++ T+R++GKGDK RIV         I EY D    +        LF   R  
Sbjct: 167 KVTTIDENERTIRVRGKGDKDRIVIFDEDTLDLIHEYLDKRGVE-----NEYLFVNQRNT 221

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L+    Q  I++  +  G+    T H LRHSFATHLL NG D+R+IQ +LGH  LSTTQ
Sbjct: 222 SLSSRYIQLMIKEYAKDAGITRRVTPHILRHSFATHLLKNGVDIRAIQQLLGHSNLSTTQ 281

Query: 297 IYTNVN 302
           IYT+V+
Sbjct: 282 IYTSVD 287


>gi|314936587|ref|ZP_07843934.1| tyrosine recombinase XerC [Staphylococcus hominis subsp. hominis
           C80]
 gi|313655206|gb|EFS18951.1| tyrosine recombinase XerC [Staphylococcus hominis subsp. hominis
           C80]
          Length = 297

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 164/315 (52%), Gaps = 28/315 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +L  L++ER  S  TL++Y  D  QF  FL    E+++    +R   Y + R ++S 
Sbjct: 5   QKKFLNMLKVERNFSDHTLKAYHDDLAQFNQFL----EQELL--NLRTFEYKDARNYLSY 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             +  +   ++ R +S +++F ++   +  +  +  + + + KK   LP+   E++   L
Sbjct: 59  LYSNNLKRTTVSRKISTLRTFYEFWMTQDTSVNNPFIQLVHPKKEQYLPQFFYEEEMEAL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            + V    S++ K    R+  ++ LLY  G+R+SE +++   ++  +   +++ GKG+K 
Sbjct: 119 FNTV----SNDAKK-GLRDRVVIELLYATGIRVSELVNIKVMDLDMNLPGVKVLGKGNKE 173

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-----R 251
           R VP     R++I +Y +   P  L       L   ++G P+     +R IR L     +
Sbjct: 174 RFVPFGEFCRQSIEQYLEKFKP--LKSKSHPYLIVNMKGDPIT----ERGIRYLLNDVVK 227

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R  G+      H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++     + 
Sbjct: 228 RTAGVT-EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ----LR 282

Query: 312 EIYDQTHPSITQKDK 326
           ++Y   HP   ++ K
Sbjct: 283 KVYLSAHPRAKKESK 297


>gi|304388409|ref|ZP_07370516.1| tyrosine recombinase XerC [Neisseria meningitidis ATCC 13091]
 gi|304337590|gb|EFM03752.1| tyrosine recombinase XerC [Neisseria meningitidis ATCC 13091]
          Length = 305

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 148/308 (48%), Gaps = 17/308 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI--TIQTIRQLSYTEIRAFISKR 78
           +L+N+ +  G S  T+ +Y  D  +    LA    E      Q + Q  +T     +S+R
Sbjct: 13  YLENI-VREGKSGHTVAAYRRDLEELFALLAQMPSEDAGGVPQGLSQRDFTAALRRLSQR 71

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +  R+L R LS  + +  +L KR +       +++  K+   +P+AL ++    ++
Sbjct: 72  ---GLNARTLARKLSSWRQYCAWLVKRGLLHTDPTADIKPPKQPERVPKALPQEWLNRML 128

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D  +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GKG K R
Sbjct: 129 DLPV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQR 184

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            VPL+    +A+  Y    P     +    LF G  G  L+    Q+ + Q     G   
Sbjct: 185 QVPLVGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGR 241

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +YD+ H
Sbjct: 242 HVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAH 297

Query: 319 PSITQKDK 326
           P   ++D+
Sbjct: 298 PRAKRQDE 305


>gi|163839844|ref|YP_001624249.1| XerC/XerD family integrase [Renibacterium salmoninarum ATCC 33209]
 gi|162953320|gb|ABY22835.1| integrase, XerC/XerD family [Renibacterium salmoninarum ATCC 33209]
          Length = 308

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 149/302 (49%), Gaps = 19/302 (6%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           Q+L  ER  S+ T+++Y  D    +     Y      +++I ++    IR ++ ++ +  
Sbjct: 19  QHLRAERARSEHTIRAYSADVESLM-----YYAIAAGVRSIDEIDLATIREWLGEQSSDG 73

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +   +L R  +  ++ + +  + ++ +    L ++  K+  +LP  L + Q   ++ + L
Sbjct: 74  LARSTLARRAASTRTLMSWALREELISVDPTLRLKAPKRQKTLPGVLQQNQMARMLAD-L 132

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
              + E      R+ AI+ LLY  GLR+ E   L   ++  ++ T+ + GKG+K R VP 
Sbjct: 133 ASAAEEGSAAALRDLAIVELLYAAGLRVGELAGLDLDDLDFERRTVVVLGKGNKERSVPF 192

Query: 203 LPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL--RRY--LGLP 257
                +A+  +     P          LF G RG  ++    QR IR +   R+  LG  
Sbjct: 193 GQPAARALQAWLQTGRPAFYREGSGAALFLGTRGGRID----QRQIRSVVGSRFVALGDT 248

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            +T+ H LRH+ ATHLL  G DLR++Q ILGH  L+TTQIYT+V+     D +   Y Q 
Sbjct: 249 SATSPHALRHTAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSV----DRLRSSYQQA 304

Query: 318 HP 319
           HP
Sbjct: 305 HP 306


>gi|262202720|ref|YP_003273928.1| tyrosine recombinase XerD [Gordonia bronchialis DSM 43247]
 gi|262086067|gb|ACY22035.1| tyrosine recombinase XerD [Gordonia bronchialis DSM 43247]
          Length = 313

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 150/307 (48%), Gaps = 22/307 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF-ISKRR 79
           +L +L +ERG +  T+ SY  D  ++  +L         I  + +++ ++IR F ++ RR
Sbjct: 18  YLDHLTVERGAAHNTVTSYRRDLERYQNYLIARG-----ISGLAEVTESDIREFLVALRR 72

Query: 80  ------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
                 ++ + D S+ R+L   + F  +     + +      +R  + +  LP++L   +
Sbjct: 73  GDEATGSRPLADSSIARTLVATRRFHGFAVDEGVVSTDVAHAVRPPRPARRLPKSLPVDE 132

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
            L +++     T    + +  R+ A+L LLY CG RISEA SL   ++      +R++GK
Sbjct: 133 VLAILEAS--STGDHPRAL--RDRALLELLYSCGARISEATSLDVDDLDTAARAVRLRGK 188

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRR 252
           G K RIVP+      AI  Y       L       LF   RG  L+    +Q  +    R
Sbjct: 189 GGKERIVPVGGPAADAIDAYLVRGRPVLATRSAPALFLNARGGRLSRQSAWQVLVSAAER 248

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL  + + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQ+YT V        M E
Sbjct: 249 -AGLDKAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVNT----MRE 303

Query: 313 IYDQTHP 319
           +Y   HP
Sbjct: 304 VYATAHP 310


>gi|170765975|ref|ZP_02900786.1| tyrosine recombinase XerD [Escherichia albertii TW07627]
 gi|170125121|gb|EDS94052.1| tyrosine recombinase XerD [Escherichia albertii TW07627]
          Length = 298

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 156/304 (51%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +E+ L++ TL +Y    R   + + +     +T+ T +     +++A +++R
Sbjct: 9   EQFLDALWLEKNLAENTLNAYR---RDLSMMVEWLHHRGLTLATAQS---DDLQALLAER 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K   +     + + +    LP+ L+E Q   L+
Sbjct: 63  LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAYLASPRLPQRLPKDLSEAQVERLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG+K R
Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL       +  Y +   P+ LN ++I + LF   R + +    F   I+      G+
Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292

Query: 316 QTHP 319
           Q HP
Sbjct: 293 QHHP 296


>gi|15803430|ref|NP_289463.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           EDL933]
 gi|15833020|ref|NP_311793.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           str. Sakai]
 gi|168760022|ref|ZP_02785029.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4501]
 gi|217327493|ref|ZP_03443576.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. TW14588]
 gi|34222933|sp|Q8X574|XERD_ECO57 RecName: Full=Tyrosine recombinase xerD
 gi|12517420|gb|AAG58022.1|AE005519_8 site-specific recombinase [Escherichia coli O157:H7 str. EDL933]
 gi|13363238|dbj|BAB37189.1| site-specific recombinase [Escherichia coli O157:H7 str. Sakai]
 gi|189369440|gb|EDU87856.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4501]
 gi|209760580|gb|ACI78602.1| site-specific recombinase [Escherichia coli]
 gi|217319860|gb|EEC28285.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. TW14588]
 gi|326339022|gb|EGD62837.1| Tyrosine recombinase XerD [Escherichia coli O157:H7 str. 1044]
          Length = 298

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 156/304 (51%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +E+ L++ TL +Y    R   + + +     +T+ T +     +++A +++R
Sbjct: 9   EQFLDALWLEKNLAENTLNAYR---RDLSMMVEWLHHRGLTLATAQS---DDLQALLAER 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K   +    ++ + K    LP+ L+E Q   L+
Sbjct: 63  LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG+K R
Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL       +  Y +   P+ LN ++I + LF   R + +        I+      G+
Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTLWHRIKHYAVLAGI 236

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292

Query: 316 QTHP 319
           Q HP
Sbjct: 293 QHHP 296


>gi|148210|gb|AAA67607.1| unknown [Escherichia coli str. K-12 substr. MG1655]
          Length = 298

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 151/307 (49%), Gaps = 17/307 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+   RQ    + F +E    +Q+ +Q   T +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--GLQSWQQCDVTMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+       I  + DL   DL  +    LF    GK  +    Q+   +   
Sbjct: 172 KGSKERRLPIGRKPVAWIEHWLDLR--DLFGSEDDALFLSKLGKRXSARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H L HSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLXHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHP 319
           +YD  HP
Sbjct: 286 VYDAAHP 292


>gi|293189843|ref|ZP_06608557.1| tyrosine recombinase XerC [Actinomyces odontolyticus F0309]
 gi|292821258|gb|EFF80203.1| tyrosine recombinase XerC [Actinomyces odontolyticus F0309]
          Length = 285

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 142/295 (48%), Gaps = 18/295 (6%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-LSYTEIRAFISKRRTQKIGDRSLK 89
           +S  T+ +Y  D    + FL+   +   T + +R+ L+   +R+++++         ++ 
Sbjct: 1   MSPHTVSAYLGDLHSLMEFLSL--DADATPEQLREALTQRAVRSWLARTLADGGARSTIA 58

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R  + I++F  +  +  I        + + +    LP  L+E  A      VLL+T+ + 
Sbjct: 59  RHTAAIRNFTSWAMREGILVSDPAALLSSPRADQLLPSPLDESDA-----RVLLNTARDE 113

Query: 150 KWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
                    RN AIL L Y CGLR+SE  +L   ++  +  T+R+ GKG+K R+VP  P 
Sbjct: 114 AAAGGASQIRNWAILELTYACGLRVSEVCALDIPSLNREALTVRVVGKGNKERVVPYGPP 173

Query: 206 VRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
              A+  +     P          LF G +G  ++P + +  + +     G+      H 
Sbjct: 174 AADALDHWLVRGRPQLAGERSGNALFLGDKGGRIDPRIVRSMVHKTAARAGV-HDIAPHG 232

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           LRHS ATHLL  G DLR++Q +LGH  LSTTQ YT+V++      +  IY + HP
Sbjct: 233 LRHSTATHLLQGGADLRAVQEMLGHSSLSTTQRYTHVDTAR----LSAIYQRAHP 283


>gi|109900374|ref|YP_663629.1| phage integrase [Pseudoalteromonas atlantica T6c]
 gi|109702655|gb|ABG42575.1| tyrosine recombinase XerC subunit [Pseudoalteromonas atlantica T6c]
          Length = 298

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 154/309 (49%), Gaps = 48/309 (15%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L+ ER L+  ++++Y+   RQ          + +TI    +L+   +R  +++ R Q + 
Sbjct: 18  LKYERNLAAKSIENYQ---RQLASIC-----QALTITAWPELTVDHVRQVLNQARRQGLS 69

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV-LL 143
            RS+   LS ++ +  YL + ++ + +    ++  K+ + LP+ LN       VD +  L
Sbjct: 70  PRSIALRLSALRGYCAYLVELEVLSSNPAKAVQAPKQGSPLPKQLN-------VDEMHQL 122

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
               +   +  R+ A+L L Y CGLR++E   L  +++ DD   LR+ GKG K RI+P+ 
Sbjct: 123 LDFDDDSLLGVRDKAMLELTYSCGLRLAELADLNLKSLQDD-GQLRVIGKGSKERILPVG 181

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----QRYI--RQLRRYL--- 254
            +  K + E+  +              RG+      P +F    +R I  RQ+ + +   
Sbjct: 182 KTALKCLGEWLKV--------------RGVLADGDEPALFLSKHRRRISHRQIAKRMQLW 227

Query: 255 ----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                L      H LRHSFATH+L + GDLR +Q +LGH  LSTTQ+YT++N ++    +
Sbjct: 228 AKQQHLDQDINPHKLRHSFATHILESSGDLRGVQELLGHANLSTTQVYTHLNFQH----L 283

Query: 311 MEIYDQTHP 319
             +YD  HP
Sbjct: 284 ASVYDTAHP 292


>gi|226313077|ref|YP_002772971.1| tyrosine recombinase [Brevibacillus brevis NBRC 100599]
 gi|226096025|dbj|BAH44467.1| probable tyrosine recombinase [Brevibacillus brevis NBRC 100599]
          Length = 314

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 144/302 (47%), Gaps = 18/302 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + + L +E+  S  T++ Y  D  +F+ F+     E+  I     +SY   R+F+++   
Sbjct: 14  FTRYLRVEKNASPHTVKQYVADISEFVSFM-----EQHQITVFAAVSYLHGRSFLAQLAG 68

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  RS+ R LS ++S  ++L +     ++    +   K    LP  L  ++     D 
Sbjct: 69  RGLSRRSIARKLSSLRSLYRFLLREGQLEQNPFQLVSTPKMEKKLPSFLYPQEVQAFFD- 127

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                   T  +  R+  I  LLY  G+R++E  +L+  ++        + GKG K R V
Sbjct: 128 ----LPDTTTPLGIRDRLIFELLYASGMRVTELTTLSVSDVNPSMGVALVYGKGAKERYV 183

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           P+       + +Y +     L L  ++    L    RG+PL+    +R + +      L 
Sbjct: 184 PVGSYACDVLRQYLEHGREKL-LAGKVEHGNLLVNYRGEPLSDRSVRRIVDKYVDTYALQ 242

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           L  + HT RH+FATH+L+ G DLR++Q +LGH  +STTQ+YT+V      + +  +YD  
Sbjct: 243 LRVSPHTFRHTFATHMLNGGADLRTVQELLGHVNVSTTQVYTHVTK----ERLRHVYDTA 298

Query: 318 HP 319
           HP
Sbjct: 299 HP 300


>gi|260461664|ref|ZP_05809911.1| tyrosine recombinase XerD [Mesorhizobium opportunistum WSM2075]
 gi|259032734|gb|EEW33998.1| tyrosine recombinase XerD [Mesorhizobium opportunistum WSM2075]
          Length = 305

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 133/297 (44%), Gaps = 30/297 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ +  ERG ++ TL SY  D              +I        +  +IRA++   
Sbjct: 8   EAFLEMMSAERGAAENTLSSYRRDLED--------ASNEIDGGLA-GAAAADIRAYLDDI 58

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S  R LS I+ F K+L    +  +     + + KK   LP+ ++E     L+
Sbjct: 59  AARGFAPTSQARKLSAIRQFFKFLYAEGLRGDDPTGTLDSPKKGRPLPKTMSEADTGRLI 118

Query: 139 DNVLLHTS-----HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           D            H  +    R  A++ +LY  GLR+SE + L       D     ++GK
Sbjct: 119 DRAATEAGDAGLGHADRLAALRLHALVEVLYATGLRVSELVGLPVTVAQRDDRFFMVRGK 178

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR--------GIRGKPLNPGVFQR 245
           GDK R+VPL    R A+  +       L     +P F               L+  VF R
Sbjct: 179 GDKERMVPLSAKARAAMRTW-------LAARAGVPAFAESPFLFPAASDSGYLSRQVFAR 231

Query: 246 YIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            ++ L    G+  +  + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V
Sbjct: 232 DLKGLAARAGIASAKVSPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHV 288


>gi|254515505|ref|ZP_05127565.1| tyrosine recombinase XerC [gamma proteobacterium NOR5-3]
 gi|219675227|gb|EED31593.1| tyrosine recombinase XerC [gamma proteobacterium NOR5-3]
          Length = 311

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 153/319 (47%), Gaps = 15/319 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            S  L +    +L+ L   R LS  T+ +Y  D   F  F      ++ ++     +  +
Sbjct: 7   TSASLAQRIAAFLEYLRSVRRLSSHTVTAYRRDLDSFEDFC-----QQHSVTGCSDVQES 61

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R ++++     +   SL+R LS ++++ ++         +  L ++  +K   LP  L
Sbjct: 62  HVRQWLAQGHRTGLAPNSLQRRLSALRAYFQWESSDTGQRRNPALAVQAPRKRRKLPGTL 121

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              Q       V L    +   +  R+ A+  LLY  GLR++E  ++   +I   QS + 
Sbjct: 122 EADQV-----GVYLRAD-DNDPLQLRDLAMAELLYSSGLRLAELRAVNIHDIDRSQSLIS 175

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG K R VP+     +AI  Y    P   +   +  LF   RG+ ++    Q  I+ 
Sbjct: 176 VTGKGSKTRTVPVGRIAIEAIDAYLPHRPTPTSAADEQALFVSGRGRRISERSIQARIQL 235

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           L +  GL      H LRHSFA+HLL + GDLR++Q +LGH  +STTQIYT+++ ++    
Sbjct: 236 LAQRNGLGRDVHPHMLRHSFASHLLESSGDLRAVQELLGHSDISTTQIYTHLDFQH---- 291

Query: 310 MMEIYDQTHPSITQKDKKN 328
           + ++YD  HP   ++  +N
Sbjct: 292 LAKVYDGAHPRARKRKDEN 310


>gi|169630285|ref|YP_001703934.1| site-specific tyrosine recombinase XerC [Mycobacterium abscessus
           ATCC 19977]
 gi|169242252|emb|CAM63280.1| Tyrosine recombinase XerC [Mycobacterium abscessus]
          Length = 304

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 137/302 (45%), Gaps = 12/302 (3%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            + ++L +ERG S  T ++Y  D       L+    E     T+  LS   +R+++  + 
Sbjct: 11  EFAEHLALERGRSVHTQRAYRGDLTLLFDHLSASNPEA----TLADLSLPVLRSWLGAQA 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q     ++ R  S +K F  +  +R +      + ++  K   +LP  L + QA     
Sbjct: 67  RQGAARSTVARRTSAVKIFTAWATRRGLLPTDPAIRLQQPKSRRTLPAVLRQDQAAAA-- 124

Query: 140 NVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
               H+  E     A R+  I+ +LY  G+R+SE   L   +I   +  LR+ GKGDK R
Sbjct: 125 MEAAHSGAEQDDPMALRDRLIVEMLYATGIRVSELCGLDIDDIDRPRKVLRVLGKGDKER 184

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
            VP       A+  + D     L +      L  G RG+ ++P   +  + Q    +   
Sbjct: 185 TVPFGDPAADALSAWLDRGRPHLAVPASGAALLLGARGRRVDPRQVRTVVHQTMSAVPGA 244

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V        +  ++DQ 
Sbjct: 245 PDIGPHGLRHSAATHLLEGGADLRVVQELLGHSTLATTQLYTHVTVAR----LRAVHDQA 300

Query: 318 HP 319
           HP
Sbjct: 301 HP 302


>gi|53804979|ref|YP_113355.1| integrase/recombinase XerC [Methylococcus capsulatus str. Bath]
 gi|53758740|gb|AAU93031.1| integrase/recombinase XerC [Methylococcus capsulatus str. Bath]
          Length = 304

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 142/295 (48%), Gaps = 18/295 (6%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGD 85
           + R  S+ T  +Y  D   F  +      + + +     +    IRA++  R  + ++  
Sbjct: 16  LARRASRHTHAAYRRDLCAFHAYC-----DSVNLAGWADVDAARIRAYVGTRHHRGELSA 70

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           RSL+R L+ I+ F   L K+++   +    +R  +    LPR L+      L+D      
Sbjct: 71  RSLQRLLAAIRGFFDDLLKKRLLDVNPARAVRPPRSGRRLPRLLDVDAVAGLLD------ 124

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLP 204
           +     ++ R+ A+  L Y  GLR+SE + L   ++     S    +GKG K R VP+  
Sbjct: 125 APADDRLETRDRAMWELFYSSGLRLSELVGLDVVDVDFGAGSVFVRKGKGGKARYVPVGA 184

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
              +AI  + +     L    Q  LF   +G+ + P   +  + + R  LGL      H 
Sbjct: 185 KALEAIGAWLEARRV-LTGAGQPALFLSRQGRRIAPRTVEMRLERWRAKLGLSERVHPHM 243

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           LRHSFA+H+L   GDLR++Q +LGH  L+TTQIYT+V+ +     +  +YDQ+HP
Sbjct: 244 LRHSFASHMLEASGDLRAVQELLGHATLATTQIYTHVDFQR----LAAVYDQSHP 294


>gi|205373364|ref|ZP_03226168.1| tyrosine recombinase xerC [Bacillus coahuilensis m4-4]
          Length = 250

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 124/254 (48%), Gaps = 9/254 (3%)

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           + Y + R +++    +K    ++ R +S +KSF K+L K     E+    + + K+   L
Sbjct: 4   IEYLDARLYLTDLYDKKYARSTVSRKVSSLKSFYKFLTKEDKLDENPFSLVFHPKQEKRL 63

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P    E++   L D     T       D RN A+L LLY  G+R+SE  +L+ ++I    
Sbjct: 64  PNFFYEEEIERLFDACKGDT-----HKDIRNLALLELLYATGIRVSECSNLSLKDIDFSF 118

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            T+ + GKG K R VP      +AI  Y D     L       LF  ++G PL     + 
Sbjct: 119 HTVLVTGKGRKERYVPFGTYASEAIKRYLDHTRHVLVKGEHQQLFVNLKGGPLTDRGIRH 178

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +  +     L      H LRH+FATHLLSNG DLRS+Q +LGH  LS+TQ YT+V  ++
Sbjct: 179 ILNDVISRASLTHKIHPHMLRHTFATHLLSNGADLRSVQELLGHSHLSSTQTYTHVTKEH 238

Query: 306 GGDWMMEIYDQTHP 319
               + + Y   HP
Sbjct: 239 ----LRKTYLSHHP 248


>gi|300934030|ref|ZP_07149286.1| integrase/recombinase [Corynebacterium resistens DSM 45100]
          Length = 276

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 118/227 (51%), Gaps = 7/227 (3%)

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           I+S   + ++ K+   +  + +   K+ +S+P+AL  +Q  +L+D            +D 
Sbjct: 57  IRSLHDFGEREKLLPSNVAVTVPVPKRGSSIPKALTVEQVSSLLDAT--PNDAAASLVDI 114

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A+L +LY  G RISE L+L   ++   +  + ++GKG K R+VPL     +A+ +Y 
Sbjct: 115 RDRAVLEMLYSTGARISELLALDVDDVDQGERMVLVRGKGAKERLVPLGSPASEALEQYV 174

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                 +N      LF  +RG  +      + + Q     GLP     H LRHSFATHLL
Sbjct: 175 VRARPAMNKKGSPALFLNMRGGRMGRQSGFKTVMQAAERAGLP-PVNPHALRHSFATHLL 233

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
             G D+R +Q +LGH  ++TTQIYT V +    D + E++  +HP +
Sbjct: 234 QGGADVRVVQELLGHSSVATTQIYTKVTA----DHLREMWATSHPRV 276


>gi|187925186|ref|YP_001896828.1| site-specific tyrosine recombinase XerD [Burkholderia phytofirmans
           PsJN]
 gi|187716380|gb|ACD17604.1| tyrosine recombinase XerD [Burkholderia phytofirmans PsJN]
          Length = 311

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/296 (29%), Positives = 144/296 (48%), Gaps = 17/296 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E GLS+ TL +Y  D R F  +LA       ++ T    S  ++ A+ + RR  K  
Sbjct: 30  LWLEHGLSRNTLDAYRRDLRLFCEWLA--QSRNASLDTA---SEADLNAYSAARRKDK-- 82

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R LS  + +  +  +   T     + +R+ K+    P  L+E Q   L+    ++
Sbjct: 83  STSANRRLSVFRRYYGWAVREHRTKVDPTVRIRSAKQPPRFPSTLSEAQVEALLGAPDIN 142

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           T+     +  R+  +L L+Y  GLR++E ++L    +  ++  +R+ GKG K R++P   
Sbjct: 143 TA-----LGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKERLIPFGE 197

Query: 205 SVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
                I  Y  +  P  L       LF   R + +    F   I++     G+    + H
Sbjct: 198 EAHSWIERYLREARPALLGARATDALFVTNRAEGMTRQQFWNIIKRHAVVAGVHAPLSPH 257

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           TLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++ Q HP
Sbjct: 258 TLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARER----LKSLHAQHHP 309


>gi|238892411|ref|YP_002917145.1| site-specific tyrosine recombinase XerC [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262040877|ref|ZP_06014103.1| tyrosine recombinase XerC [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|329997490|ref|ZP_08302792.1| tyrosine recombinase XerC [Klebsiella sp. MS 92-3]
 gi|238544727|dbj|BAH61078.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259041766|gb|EEW42811.1| tyrosine recombinase XerC [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328539058|gb|EGF65097.1| tyrosine recombinase XerC [Klebsiella sp. MS 92-3]
          Length = 300

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 150/299 (50%), Gaps = 19/299 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L++L +ER LS +TL +Y+   RQ    +A   E    +++  Q    ++R+F  + R  
Sbjct: 14  LRHLGVERQLSPITLLNYQ---RQLDALIALADEA--GLKSWSQCDAAQVRSFAVRSRRA 68

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +G  SL   LS ++SF  +L  +   + +    +   K    LP+ ++      L+D  
Sbjct: 69  GLGPASLALRLSALRSFFDWLVGQGELSANPAKGIAAPKIPRHLPKNIDVDDVNRLLDID 128

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           L         +  R+ A+L ++YG GLR+SE ++L  +++  +   + + GKG K R +P
Sbjct: 129 L------NDPLAVRDRAMLEVMYGAGLRLSELVNLDIKHLDLESGEVWVMGKGSKERRLP 182

Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +  +    I  + DL   F  + +    LF    GK ++    Q+   +     GL    
Sbjct: 183 IGRNAVAWIEHWLDLRGLFGTDDD---ALFLSKLGKRISARNVQKRFAEWGIKQGLNSHV 239

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
             H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  +YD  HP
Sbjct: 240 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 294


>gi|261364802|ref|ZP_05977685.1| tyrosine recombinase XerC [Neisseria mucosa ATCC 25996]
 gi|288566830|gb|EFC88390.1| tyrosine recombinase XerC [Neisseria mucosa ATCC 25996]
          Length = 299

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 146/297 (49%), Gaps = 17/297 (5%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           ++G S  TL +Y  D  + +  L   + E     T + L+  +  A + +   Q + +R+
Sbjct: 19  QQGKSAHTLSAYGRDLTELVRLLTEGSSE-----TAQDLTRRDFVAALKRLSQQGLSERT 73

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           L R LS  + +  +L +  +      +N++  +    LP+AL +++   ++DN       
Sbjct: 74  LARKLSAWRQYCGWLVQSSMMDNDPTVNLKAPRLPERLPKALPQEELNHMLDNTPADDG- 132

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
               +  R+ A+  L+YG GLR+SE   L   +++ D+  + + GKG K R VPL     
Sbjct: 133 ----LAVRDHALFELMYGSGLRLSEIHGLDLGDVLLDEGWVSVTGKGRKERQVPLSGKSV 188

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A+  Y       +  + +  LF G  G  L     Q+ ++      G     + H +RH
Sbjct: 189 EALRAY---LSERVAADGETALFTGKNGTRLGQRQIQKRLQAWAVQQGSGQHISPHMMRH 245

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           S+A+HLL +  D+R++Q +LGH  LSTTQIYT ++     D + ++YD+ HP   +K
Sbjct: 246 SYASHLLQSSRDIRAVQELLGHSNLSTTQIYTKLDF----DHLAKVYDEGHPRAKRK 298


>gi|333029569|ref|ZP_08457630.1| Tyrosine recombinase xerC [Bacteroides coprosuis DSM 18011]
 gi|332740166|gb|EGJ70648.1| Tyrosine recombinase xerC [Bacteroides coprosuis DSM 18011]
          Length = 305

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/297 (31%), Positives = 155/297 (52%), Gaps = 24/297 (8%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +LL+   N+ Q L++E+ LS  TL +Y  D  + +    +  +EK+++ TI   + + ++
Sbjct: 10  QLLRVINNYRQYLKLEKSLSPNTLDAYLSDLDKLV---KYANDEKLSLFTI---TLSNLQ 63

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            FI+      I  RS  R +SGIKSF  +L   +   ++    + + K    +P  L   
Sbjct: 64  NFIANLHDIGIHPRSQARIISGIKSFYHFLLLEEYIEDNPADLLDSPKIGFKVPEVLTLA 123

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   +++ V + T+        RN AIL  LY CGLR+SE  +L    +  D   + + G
Sbjct: 124 EIDAIINVVDVSTAE-----GQRNRAILETLYSCGLRVSELTNLKISKLYFDDGYVIVDG 178

Query: 193 KGDKIRIVPLLPSVRKAILE--YYDLCPFDLNLNI-----QLPLFRGIRGKPLNPGVFQR 245
           KG K R+VP+     +AI E  YY +   D  ++I     +  LF   RG  L+  +   
Sbjct: 179 KGSKQRLVPI---SNRAIQEIKYYLM---DRGMSIIKKGSEDTLFLNRRGTGLSRVMIFN 232

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +++      +  + + HT RHSFATHLL  G +LR+IQS+LGH  ++TT+IYT+++
Sbjct: 233 IVKKYSEEAEISKNVSPHTFRHSFATHLLEGGANLRAIQSMLGHESITTTEIYTHLD 289


>gi|242237692|ref|YP_002985873.1| site-specific tyrosine recombinase XerC [Dickeya dadantii Ech703]
 gi|242129749|gb|ACS84051.1| tyrosine recombinase XerC [Dickeya dadantii Ech703]
          Length = 302

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 151/307 (49%), Gaps = 35/307 (11%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L +ER LS LTL+SY     Q  + +   T E+  I   R+L    +R+  ++ +  
Sbjct: 15  LRYLRVERRLSPLTLRSY-----QHQLQVIASTLEESGISDWRRLDAAGVRSLAARGKRD 69

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ-----ALT 136
            +   SL + LS ++SFL +L  R   + +    +   K    LP+ ++  +     A+ 
Sbjct: 70  GLSAASLAQRLSALRSFLDWLVSRGELSANPARGVSAPKAGRHLPKNMDVDETDRLLAID 129

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L D + +           R+ A+L ++YG GLR++E + L  +++      + + GKG K
Sbjct: 130 LNDPLAV-----------RDRAMLEVMYGAGLRLAELVGLDCRHLDLADGEIWVLGKGSK 178

Query: 197 IRIVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
            R +P+  +    +  + D+     P D        +F   RGK ++    Q+   +   
Sbjct: 179 ERRLPIGATAVAWLRRWLDVREIYAPDDD------AVFVSSRGKRISMRNVQKRFAEWGV 232

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+      H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 233 KQGISSHVHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LAS 288

Query: 313 IYDQTHP 319
           +YD  HP
Sbjct: 289 VYDAAHP 295


>gi|90407171|ref|ZP_01215359.1| tyrosine recombinase [Psychromonas sp. CNPT3]
 gi|90311747|gb|EAS39844.1| tyrosine recombinase [Psychromonas sp. CNPT3]
          Length = 298

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/307 (31%), Positives = 155/307 (50%), Gaps = 27/307 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L +ERGLS+ TL SY  D      FL      +   + + + SY ++  + S R  
Sbjct: 9   FLDSLWLERGLSQNTLASYRFDLCLVQNFL------EANNKVLAEASYQDLCDYFSFRLY 62

Query: 81  QKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             I   + S  R +S ++ + ++L + K+  +     +++ K    LP++L+E +    V
Sbjct: 63  SDIAYKNSSTARLMSALRRYYQFLCREKLRDDDPSAKLQSPKTLKPLPKSLSESE----V 118

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D  LL     +  +  R+ A+L LLY  GLR+SE + L  Q +   Q  +R+ GKG+K R
Sbjct: 119 DG-LLSAPDLSDSVQFRDKAMLELLYATGLRVSELVGLQMQELNLQQGVVRVTGKGEKTR 177

Query: 199 IVPLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIR--QLRR 252
           +VPL       +  Y +    +L    + +I   LF   RG  +    F   I+   LR 
Sbjct: 178 LVPLGEEANYWVDRYIEEVRPELLKGRSCDI---LFPSRRGSQMVRQTFWHRIKYYALRC 234

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            +   L  + H LRH+FATHLL+ G DLR +Q +LGH  LS+TQIYT++      D + E
Sbjct: 235 NIDKTL-ISPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSSTQIYTHI----AQDRLKE 289

Query: 313 IYDQTHP 319
           ++   HP
Sbjct: 290 LHKMHHP 296


>gi|218767552|ref|YP_002342064.1| putative integrase/recombinase [Neisseria meningitidis Z2491]
 gi|34223069|sp|Q9JW14|XERC_NEIMA RecName: Full=Tyrosine recombinase xerC
 gi|121051560|emb|CAM07858.1| putative integrase/recombinase [Neisseria meningitidis Z2491]
 gi|319409816|emb|CBY90124.1| tyrosine recombinase XerC [Neisseria meningitidis WUE 2594]
          Length = 305

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 148/308 (48%), Gaps = 17/308 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI--TIQTIRQLSYTEIRAFISKR 78
           +L+N+ +  G S+ T+ +Y  D  +    LA    E      Q + Q  +T     +S+R
Sbjct: 13  YLENI-VREGKSEHTVAAYRRDLEELFALLAQMPSEDAGGVPQGLSQRDFTAALRRLSQR 71

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +  R+L R LS  + +  +L KR +       +++  K+   +P+AL ++    ++
Sbjct: 72  ---GLNARTLARKLSSWRQYCAWLVKRGLLHTDPTADIKPPKQPERVPKALPQEWLNRML 128

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D  +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GKG K R
Sbjct: 129 DLPV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQR 184

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            VPL     +A+  Y    P     +    LF G  G  L+    Q+ + Q     G   
Sbjct: 185 QVPLTGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGR 241

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +YD+ H
Sbjct: 242 HVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAH 297

Query: 319 PSITQKDK 326
           P   ++D+
Sbjct: 298 PRAKRQDE 305


>gi|327188713|gb|EGE55912.1| tyrosine site-specific integrase/recombinase protein [Rhizobium
           etli CNPAF512]
          Length = 317

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/322 (30%), Positives = 157/322 (48%), Gaps = 27/322 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR--QLSYTEIRAFIS 76
           +++L+ +  ERG +  TLQSYE D      FL          ++IR  + +  ++ A+++
Sbjct: 10  ESFLEMMSAERGAAANTLQSYERDLDDIRSFL--------NGRSIRLTEAASADLSAYLA 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              +Q     S  R L+ ++ F K+L    I T+     +   KK   LP+ +  ++   
Sbjct: 62  SLASQGFKPSSQARRLAAMRQFYKFLYAEGIRTDDPTGVLDAPKKGRPLPKTMGVEEVGR 121

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLL--YGCGLRISEALSLTPQNIMDDQST-LRIQGK 193
           L+                R   +  L   Y  G+R+SE +SL P  ++D +   L I+GK
Sbjct: 122 LLSQAQTEADDPAPGQLQRLRMLALLELLYATGMRVSELVSL-PAGVLDQEGRFLMIRGK 180

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNP-GVFQRYI 247
           G+K R+VPL  S  KA+  Y  L   + N   + P     LF     +   P  VF R +
Sbjct: 181 GNKERLVPLSQSAIKALKSYGRLLAAE-NAAAKEPQESPFLFSAASKEGYLPRQVFARDL 239

Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           + L    GL P   + H +RH+FA+HLL+NG DLR +Q +LGH  +STTQIYT+V  +  
Sbjct: 240 KNLAIRAGLTPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER- 298

Query: 307 GDWMMEIYDQTHPSITQKDKKN 328
               ++   QTH  + ++ KK+
Sbjct: 299 ----LQQLVQTHHPLAKQAKKH 316


>gi|59800504|ref|YP_207216.1| putative site-specific recombinase [Neisseria gonorrhoeae FA 1090]
 gi|194097632|ref|YP_002000668.1| putative site-specific recombinase [Neisseria gonorrhoeae
           NCCP11945]
 gi|239998167|ref|ZP_04718091.1| putative site-specific recombinase [Neisseria gonorrhoeae 35/02]
 gi|240013349|ref|ZP_04720262.1| putative site-specific recombinase [Neisseria gonorrhoeae DGI18]
 gi|240015794|ref|ZP_04722334.1| putative site-specific recombinase [Neisseria gonorrhoeae FA6140]
 gi|240079931|ref|ZP_04724474.1| putative site-specific recombinase [Neisseria gonorrhoeae FA19]
 gi|240112137|ref|ZP_04726627.1| putative site-specific recombinase [Neisseria gonorrhoeae MS11]
 gi|240114883|ref|ZP_04728945.1| putative site-specific recombinase [Neisseria gonorrhoeae PID18]
 gi|240117087|ref|ZP_04731149.1| putative site-specific recombinase [Neisseria gonorrhoeae PID1]
 gi|240120422|ref|ZP_04733384.1| putative site-specific recombinase [Neisseria gonorrhoeae PID24-1]
 gi|240122724|ref|ZP_04735680.1| putative site-specific recombinase [Neisseria gonorrhoeae PID332]
 gi|240124914|ref|ZP_04737800.1| putative site-specific recombinase [Neisseria gonorrhoeae
           SK-92-679]
 gi|254492944|ref|ZP_05106115.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 1291]
 gi|260441302|ref|ZP_05795118.1| putative site-specific recombinase [Neisseria gonorrhoeae DGI2]
 gi|268594018|ref|ZP_06128185.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 35/02]
 gi|268596071|ref|ZP_06130238.1| tyrosine recombinase xerC [Neisseria gonorrhoeae FA19]
 gi|268598196|ref|ZP_06132363.1| tyrosine recombinase xerC [Neisseria gonorrhoeae MS11]
 gi|268600541|ref|ZP_06134708.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID18]
 gi|268602774|ref|ZP_06136941.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID1]
 gi|268681323|ref|ZP_06148185.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID332]
 gi|268683494|ref|ZP_06150356.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-92-679]
 gi|291044658|ref|ZP_06570367.1| tyrosine recombinase xerC [Neisseria gonorrhoeae DGI2]
 gi|293397766|ref|ZP_06641972.1| tyrosine recombinase XerC [Neisseria gonorrhoeae F62]
 gi|75356483|sp|Q5FAI3|XERC_NEIG1 RecName: Full=Tyrosine recombinase xerC
 gi|254799349|sp|B4RNW5|XERC_NEIG2 RecName: Full=Tyrosine recombinase xerC
 gi|59717399|gb|AAW88804.1| putative site-specific recombinase [Neisseria gonorrhoeae FA 1090]
 gi|193932922|gb|ACF28746.1| putative site-specific recombinase [Neisseria gonorrhoeae
           NCCP11945]
 gi|226511984|gb|EEH61329.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 1291]
 gi|268547407|gb|EEZ42825.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 35/02]
 gi|268549859|gb|EEZ44878.1| tyrosine recombinase xerC [Neisseria gonorrhoeae FA19]
 gi|268582327|gb|EEZ47003.1| tyrosine recombinase xerC [Neisseria gonorrhoeae MS11]
 gi|268584672|gb|EEZ49348.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID18]
 gi|268586905|gb|EEZ51581.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID1]
 gi|268621607|gb|EEZ54007.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID332]
 gi|268623778|gb|EEZ56178.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-92-679]
 gi|291011552|gb|EFE03548.1| tyrosine recombinase xerC [Neisseria gonorrhoeae DGI2]
 gi|291611712|gb|EFF40781.1| tyrosine recombinase XerC [Neisseria gonorrhoeae F62]
 gi|317163457|gb|ADV06998.1| putative site-specific recombinase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 305

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 146/306 (47%), Gaps = 13/306 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+N+ +  G S+ T+ +Y  D  +    LA    E       + LS  +  A + +   
Sbjct: 13  YLENI-VREGKSEHTVAAYRRDLEELFALLAQMPSEDAG-GVPQDLSRRDFTAALRRLSQ 70

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  R+L R LS  + +  +L KR +       +++  K+   +P+AL ++    ++D 
Sbjct: 71  RGLDGRTLARKLSAWRQYCAWLVKRGLMRADPTADIKPPKQPERVPKALPQEWLNRMLDL 130

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GKG K R V
Sbjct: 131 PVDGGDP----LAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQV 186

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           PL     +A+  Y    P     +    LF G  G  L+    Q+ +       G     
Sbjct: 187 PLTGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLESWAAQYGDGRHV 243

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +YD+ HP 
Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAHPR 299

Query: 321 ITQKDK 326
             ++D+
Sbjct: 300 AKRQDE 305


>gi|152972799|ref|YP_001337945.1| site-specific tyrosine recombinase XerC [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|150957648|gb|ABR79678.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 300

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 150/299 (50%), Gaps = 19/299 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L++L +ER LS +TL +Y+   RQ    +A   E    +++  Q    ++R+F  + R  
Sbjct: 14  LRHLGVERQLSPITLLNYQ---RQLDALIALADEA--GLKSWSQCDAAQVRSFAVRSRRA 68

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +G  SL   LS ++SF  +L  +   + +    +   K    LP+ ++      L+D  
Sbjct: 69  GLGPASLALRLSALRSFFDWLVGQGELSANPAKGIAAPKIPRHLPKNIDVDDVNRLLDID 128

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           L         +  R+ A+L ++YG GLR+SE ++L  +++  +   + + GKG K R +P
Sbjct: 129 L------NDPLAVRDRAMLEVMYGAGLRLSELVNLDIKHLDLESGEVWVMGKGSKERRLP 182

Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +  +    I  + DL   F  + +    LF    GK ++    Q+   +     GL    
Sbjct: 183 IGRNAVAWIEHWLDLRGLFGTDDD---ALFLSKLGKRISARNVQKRFAEWGIRQGLNSHV 239

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
             H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  +YD  HP
Sbjct: 240 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 294


>gi|163857876|ref|YP_001632174.1| site-specific tyrosine recombinase XerD [Bordetella petrii DSM
           12804]
 gi|163261604|emb|CAP43906.1| integrase/recombinase [Bordetella petrii]
          Length = 310

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 133/279 (47%), Gaps = 10/279 (3%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEE--KITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +E GL+  TL +Y  D   F  +L    E     T   +R     +I A+ + R      
Sbjct: 22  LEDGLAANTLAAYRRDLSAFARWLETPAEHGGAATASLLRDAGTGDIEAWFAARHADSRA 81

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +  R L+ ++ F  +  +   T     L +   K+   +P+ L+E Q   L+    L+
Sbjct: 82  T-TANRRLAALRRFYAWALREHRTGHDPCLTLSAAKQPPRMPKTLSEAQVDALLRAPDLN 140

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLL 203
           T+        R+ A+L  LY  GLR+SE +++    +  ++  +R+  GKG K R+VPL 
Sbjct: 141 TARGL-----RDRAMLETLYATGLRVSELVNIKVLEVSLNEGVVRVVMGKGGKDRLVPLG 195

Query: 204 PSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
                 I  Y      DL    +   LF   R +P+    F + I++     G+    + 
Sbjct: 196 AEAAHWIDRYLKEARPDLAGARVSDALFLTARAQPMTRQAFWQLIKKYAVVSGVRAPLSP 255

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 256 HVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHV 294


>gi|239833075|ref|ZP_04681404.1| tyrosine recombinase XerD [Ochrobactrum intermedium LMG 3301]
 gi|239825342|gb|EEQ96910.1| tyrosine recombinase XerD [Ochrobactrum intermedium LMG 3301]
          Length = 313

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 133/295 (45%), Gaps = 20/295 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N+L+ +  ERG ++ TL+SY  D       +A           + +     +R+ I   
Sbjct: 10  ENFLEMMSAERGAARNTLESYRRDLEAVAEAMAARG------VNLAEAGADHVRSAIDAM 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S  R LS ++ F ++L       +     +   KK   LP+ ++ +    L+
Sbjct: 64  AAEGFAATSQARRLSALRQFFRFLYSEGYRQDDPTGTVDAPKKQKPLPKIMSVENVTRLL 123

Query: 139 DNVLLHTSHETKWIDARNSAILYL--------LYGCGLRISEALSLTPQNIMDDQSTLRI 190
           D  +L         D  +  +  L        LY  GLR+SE + L       D   L +
Sbjct: 124 DRAVLEADEPGGPADLTSDRLRALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLV 183

Query: 191 QGKGDKIRIVPLLPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           +GKG K R+VPL P  R+A+   L   D  P   +     P F       L   VF R +
Sbjct: 184 RGKGSKERMVPLSPKAREALQRFLALRDSLPGSDDNPWLFPAFS--ESGHLARQVFAREL 241

Query: 248 RQLRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + L    GL  S  + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V
Sbjct: 242 KGLAARAGLSASAVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHV 296


>gi|269137482|ref|YP_003294182.1| site-specific recombinase XerC [Edwardsiella tarda EIB202]
 gi|267983142|gb|ACY82971.1| site-specific recombinase XerC [Edwardsiella tarda EIB202]
 gi|304557555|gb|ADM40219.1| Tyrosine recombinase XerC [Edwardsiella tarda FL6-60]
          Length = 303

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 153/317 (48%), Gaps = 23/317 (7%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
            +LPE +S  +      +LQ + +ER LS  T+++Y    RQ     A   E  +     
Sbjct: 2   TSLPEALSTPV----AAFLQMMRVERQLSPRTVETYR---RQLAASAALLLEGGLCDWAA 54

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
             L  T +R+ +++ R Q +   SL   LS ++SFL +   R   T +    +   ++  
Sbjct: 55  --LDTTRVRSLVARSRRQGLEPASLALRLSALRSFLDWQVSRGALTANPAKGVAAPRQGR 112

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            LP+ L+      L+D        E   +  R+ A+L ++YG GLR+SE + L  +++  
Sbjct: 113 HLPKNLDVDDVNRLLD------IDEGDTLAVRDRAMLEVMYGGGLRLSELVGLDCRHVDL 166

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGV 242
               + + GKG K R    LP  R+A+          L+L  Q   LF    G  ++P  
Sbjct: 167 TTGEVWVLGKGSKER---RLPVGREAVRWLQTWLSLRLSLQPQDDALFVSRLGGRISPRS 223

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            Q+   +     G+      H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++
Sbjct: 224 VQKRFAEWGVKQGVTSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLD 283

Query: 303 SKNGGDWMMEIYDQTHP 319
            ++    +  +YD  HP
Sbjct: 284 FQH----LATVYDAAHP 296


>gi|313681427|ref|YP_004059165.1| integrase family protein [Sulfuricurvum kujiense DSM 16994]
 gi|313154287|gb|ADR32965.1| integrase family protein [Sulfuricurvum kujiense DSM 16994]
          Length = 282

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 157/321 (48%), Gaps = 49/321 (15%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL ++++ +L+ L+  RG S LT++SY     + L F      E      +  ++   +R
Sbjct: 5   ELYRQKEAFLKYLDTIRGYSPLTIRSYNDAIDEMLTF-----AEMDASSNLLSINLMPLR 59

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
             IS  + + I  +     LS I+SF+KYL+ +  T E  +    ++K   +LP+ +  +
Sbjct: 60  LKISSLKAKSIAAK-----LSAIRSFVKYLRSQGKTVE--LRGDESIKTPKTLPKPITHE 112

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q L           H  ++ + + +  + LLY  GLRISE   L   +I +  S  RI G
Sbjct: 113 QIL-----------HALQYAEPQAALAITLLYTMGLRISELTHLRLSDISEGWS--RIHG 159

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCP-----FDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           KG K R +P++ ++R  + EY  + P     F+L            +G+ L+    +  I
Sbjct: 160 KGSKERDIPMMDNIRTMVQEYQKINPSREYVFEL------------KGEKLSENSLRYTI 207

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
             ++ +  + L  T H LRH++AT LL+NG  +  +  +LGH  ++TTQIYT    K G 
Sbjct: 208 --IKAFAKVGLKVTPHQLRHTYATELLNNGARIADVSELLGHASMATTQIYT----KLGN 261

Query: 308 DWMMEIYDQTHP-SITQKDKK 327
              ME Y Q+HP   T +D K
Sbjct: 262 ALKMEHYLQSHPLCQTHEDSK 282


>gi|209521010|ref|ZP_03269744.1| tyrosine recombinase XerD [Burkholderia sp. H160]
 gi|209498544|gb|EDZ98665.1| tyrosine recombinase XerD [Burkholderia sp. H160]
          Length = 318

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 140/296 (47%), Gaps = 17/296 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E GLS+ TL +Y  D R F  +LA      +        S  ++ A+ + R+  K  
Sbjct: 37  LWLEHGLSRNTLDAYRRDLRLFCEWLAHTRNASLDTA-----SEADLTAYSAARQQDKAT 91

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R LS  + +  +  +         L +R+ K+    P  L+E Q   L+    + 
Sbjct: 92  --SANRRLSVFRRYYAWAVREHRAAADPTLRIRSAKQPPRFPSTLSEAQVEALLGAPDID 149

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           T      +  R+  +L L+Y  GLR++E ++L    +  ++  +R+ GKG K R++P   
Sbjct: 150 TP-----LGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVTGKGSKERLIPFGE 204

Query: 205 SVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
                I  Y  +  P  L       LF   R + +    F   I++  +  G+    + H
Sbjct: 205 EAHAWIERYLREARPALLGPRAADALFVTARAEGMTRQQFWNIIKRHAQVAGVHAPLSPH 264

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           TLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++ Q HP
Sbjct: 265 TLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARER----LKSLHAQHHP 316


>gi|92116109|ref|YP_575838.1| tyrosine recombinase XerD [Nitrobacter hamburgensis X14]
 gi|91799003|gb|ABE61378.1| tyrosine recombinase XerD subunit [Nitrobacter hamburgensis X14]
          Length = 319

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 146/302 (48%), Gaps = 36/302 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI--QTIRQ-LSYTEIRAFISK 77
           +L  L  E+G    TL +Y  D      FL    +  +T   QT+R  L   ++R F S 
Sbjct: 15  FLDMLAAEQGAGDNTLDAYRRDLEDLSAFLTRVGQTFVTAGTQTLRDYLGDLDVRGFKSS 74

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    S+ R LS ++   ++L   +I ++     +   K+  SLP+ L+    +  
Sbjct: 75  ---------SVARRLSAMRHLFRFLLSERIRSDDPAAILSGPKRGRSLPKVLS----IAD 121

Query: 138 VDNVLLHTSHETKWIDA---------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           VD +L       +  DA         R   +L +LY  GLR+SE +SL       D   +
Sbjct: 122 VDRLLACAKAAMETPDASPARRLRAARLYCLLEVLYATGLRVSELVSLPLSAARRDARMI 181

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEY----YDLCPFDLNLNIQ----LPLFRGIRGKPLNP 240
            ++GKG+K R+VPL  + R+A+ +Y     D    D  + +Q     P F G  G  L  
Sbjct: 182 VVRGKGNKERLVPLNEASRQAMADYLAAMADRRGADKAVAVQPKWLFPSF-GESGH-LTR 239

Query: 241 GVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
             F R +++L    GL P   + H LRH+FA+HLL NG DLR +Q++LGH  +STTQIYT
Sbjct: 240 QHFARELKELAAAAGLAPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYT 299

Query: 300 NV 301
           +V
Sbjct: 300 HV 301


>gi|46201486|ref|ZP_00208119.1| COG4974: Site-specific recombinase XerD [Magnetospirillum
           magnetotacticum MS-1]
          Length = 305

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 143/292 (48%), Gaps = 25/292 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L+ +++ERG S  TL +Y  D   F  FL    +  +  +         + A+I+++
Sbjct: 10  ESFLEMMQVERGASPNTLDAYGRDLADFAEFLDGRGQSPLNAEG------RSVAAYIARQ 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +  R+  R LS +K F  +    ++  +    N+   +    LP+ L +++   L+
Sbjct: 64  AEIGMAARTQARRLSCLKQFYGFAFAERLRPDDPTANIDAPRLGRPLPKYLRKEEVTALL 123

Query: 139 DNVLLHTSHETKWIDARN----SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           D          + ++ R+    +A++  LY  GLR+SE +SL    +  D + L ++GKG
Sbjct: 124 DAA--------RALEGRDGILMTALMETLYATGLRVSELVSLPLSAVARDPNVLVVRGKG 175

Query: 195 DKIRIVPLLPSVRKAIL----EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            K R+VPL    R A++    E   + P         P   G  G     G F + + + 
Sbjct: 176 SKERMVPLSDPARAALIAWKAERETMVPKSRPSRWLFP-SSGRLGHLTRSG-FAKMLARA 233

Query: 251 RRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               GL P   + H LRHSFA+HLL+ G DLRS+Q +LGH  ++TT+IYT++
Sbjct: 234 AVLAGLDPFKVSPHVLRHSFASHLLAGGADLRSVQEMLGHADIATTEIYTHL 285


>gi|261856623|ref|YP_003263906.1| tyrosine recombinase XerD [Halothiobacillus neapolitanus c2]
 gi|261837092|gb|ACX96859.1| tyrosine recombinase XerD [Halothiobacillus neapolitanus c2]
          Length = 311

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/300 (31%), Positives = 147/300 (49%), Gaps = 16/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  L +E GLSK T  +Y  D R     LA    ++  ++ + ++S  ++   + +R +
Sbjct: 25  FINALWLEEGLSKNTQSAYRSDLR-----LAALDWQRAGLR-LNEVSAEDLPRLLGERMS 78

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                RS+ R  S +K F  +L+++ + T+     +   +   +LP AL+E +       
Sbjct: 79  SGQSARSIARLRSSLKRFFGWLRQQNLRTDDPTTALAAPRLPRALPYALSENEV-----E 133

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL     ++ I  R+ A+L LLY  GLR++E + L    I   Q  LRI GKG+K R+V
Sbjct: 134 RLLAAPDVSEPIGLRDRAMLELLYASGLRVTELIGLQFGQINLVQGVLRITGKGNKDRLV 193

Query: 201 PLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+       +  Y       L        +F   RG  +    F   I+      GL   
Sbjct: 194 PIGDEAIVWLSRYLREARSGLLGRRESANVFVTERGDGMTRQAFWYRIKHHALAAGLARL 253

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V +      +  ++ Q HP
Sbjct: 254 PSPHTLRHAFATHLLNHGADLRVLQMLLGHADLSTTQIYTHVATTR----LKALHAQHHP 309


>gi|198277388|ref|ZP_03209919.1| hypothetical protein BACPLE_03600 [Bacteroides plebeius DSM 17135]
 gi|198269886|gb|EDY94156.1| hypothetical protein BACPLE_03600 [Bacteroides plebeius DSM 17135]
          Length = 303

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/287 (31%), Positives = 146/287 (50%), Gaps = 20/287 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + Q L++E+ LS  T+++Y  D  +   FL     E I      +++   +  F +  R 
Sbjct: 13  YRQYLKLEKSLSANTVEAYLTDLDKLFAFLEL---ESIHFT---EVTLENLETFSAGLRD 66

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             I  RS  R LSGI+SF ++L       +     + + +    LP  L  ++    +D 
Sbjct: 67  IGIHPRSQARILSGIRSFFRFLLLEDYIQQDPSELLESPQIGKHLPDVLTVEE----IDR 122

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           ++      T+    RN AIL  LY CGLR+SE  +L   ++   +  ++++GKG K R+V
Sbjct: 123 LIGSIDRSTRE-GQRNRAILETLYSCGLRVSELCNLKLSDLYLKEKFIKVEGKGSKQRLV 181

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           P+ P   +AI E     P D N  +  P     +F    GK ++  +    I++L   +G
Sbjct: 182 PISP---RAIHELELYFP-DRNEGLIKPGYEDFVFISRFGKNISRIMVFHIIKELAEQIG 237

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           L  + + HT RHSFATHLL  G +LR+IQ +LGH  + TT+IYT+++
Sbjct: 238 LKKTISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHLD 284


>gi|259415887|ref|ZP_05739807.1| phage integrase [Silicibacter sp. TrichCH4B]
 gi|259347326|gb|EEW59103.1| phage integrase [Silicibacter sp. TrichCH4B]
          Length = 317

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 150/316 (47%), Gaps = 24/316 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L     E G +  TL +Y  D R    ++A          +  Q+  ++I A++    
Sbjct: 13  TFLDAQAAELGAAHNTLLAYGRDLRNVTAWMAHKG------TSFAQMRQSDIEAYLISCD 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +   +  R LS IK   ++  +     ++  L ++   +  SLP+ L+E +    VD
Sbjct: 67  AEGLSRATRARRLSAIKQIYRFAFEEGWRQDNPALQIKGPGREKSLPKTLDENE----VD 122

Query: 140 NVL--LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            +L    T   T+    RN+ ++ LLY  G+R+SE +SL       D + L I GKG K 
Sbjct: 123 RLLGAARTVGRTEADRLRNTCLMELLYATGMRVSELVSLPVSAARGDPNMLLILGKGGKE 182

Query: 198 RIVPLLPSVRKAILEYYDL--CPFDLNLNIQLPLFRGIRGKPLNPGVFQRY-----IRQL 250
           R+VPL P  R A+  + ++     D          R +       G   R+     I++L
Sbjct: 183 RMVPLSPPARMALSTWIEVRDAVEDKREGQGHKASRFLFPSRSKEGHLTRHRFYLLIKEL 242

Query: 251 RRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
               G+ P   T HTLRH+FATHLL NG DLR+IQ++LGH  ++TT+IYT+V        
Sbjct: 243 AVAGGVSPEKVTPHTLRHAFATHLLQNGADLRAIQALLGHADIATTEIYTHVLDAR---- 298

Query: 310 MMEIYDQTHPSITQKD 325
           + E+  + HP  T+ D
Sbjct: 299 LAELVHRHHPLATKDD 314


>gi|254670992|emb|CBA07733.1| site-specific recombinase [Neisseria meningitidis alpha153]
          Length = 305

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 148/308 (48%), Gaps = 17/308 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI--TIQTIRQLSYTEIRAFISKR 78
           +L+N+ +  G S+ T+ +Y  D  +    LA    E      Q + Q  +T     +S+R
Sbjct: 13  YLENI-VREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQGLSQRDFTAALRRLSQR 71

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +  R+L R LS  + +  +L KR +       +++  K+   +P+AL ++    ++
Sbjct: 72  ---GLNARTLARKLSSWRQYCAWLVKRGLMRADPTADIKPPKQPERVPKALPQEWLNRML 128

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D  +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GKG K R
Sbjct: 129 DLPVDGGDP----LAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQR 184

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            VPL     +A+  Y    P     +    LF G  G  L+    Q+ + Q     G   
Sbjct: 185 QVPLTGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGR 241

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +YD+ H
Sbjct: 242 HVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAH 297

Query: 319 PSITQKDK 326
           P   ++D+
Sbjct: 298 PRAKRQDE 305


>gi|330444332|ref|YP_004377318.1| site-specific recombinase, phage integrase family [Chlamydophila
           pecorum E58]
 gi|328807442|gb|AEB41615.1| site-specific recombinase, phage integrase family [Chlamydophila
           pecorum E58]
          Length = 312

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 144/290 (49%), Gaps = 20/290 (6%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFY----TEEKITIQTIRQ---------LSYTEIRAFI 75
           + +S  TL++Y  D  +F  F+  +    T  KIT+    Q         L+   IR +I
Sbjct: 15  KSVSLHTLRNYSIDFSKFKEFIETHKQLPTTPKITLHMKFQETSDLPLSLLTKDLIRLYI 74

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           S    Q    R++KR LS +KSF +Y  K ++  E    N++  K    LP  ++ +Q  
Sbjct: 75  SYLIEQGKSKRTIKRRLSTLKSFSRYCLKMQLLFEDPTENIQGPKLPKELPSPISYEQV- 133

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
                +L+     +K+   R+  +L L Y  GLR+SE  ++  Q+I  + + +RI GKG 
Sbjct: 134 ----EILMTMPDVSKYTGLRDRCLLELFYSSGLRLSEITAINRQDIDFEAALIRIFGKGK 189

Query: 196 KIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K R++P+ P   + +  Y Y      +  + Q   F    G  ++P    R  +   +  
Sbjct: 190 KERVLPVTPCAIRWLHHYLYHSERMSIQKDTQ-AFFLNRFGTRISPRSIDRKFQHYLQLS 248

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           GL  + T HT+RH+ ATH L NG DL++IQ++LGH  L TT IYT V+ K
Sbjct: 249 GLTGNITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTQVSIK 298


>gi|197287151|ref|YP_002153023.1| site-specific tyrosine recombinase XerC [Proteus mirabilis HI4320]
 gi|227357156|ref|ZP_03841525.1| tyrosine recombinase [Proteus mirabilis ATCC 29906]
 gi|34222763|sp|O31207|XERC_PROMI RecName: Full=Tyrosine recombinase xerC
 gi|2645802|gb|AAB87500.1| site-specific recombinase [Proteus mirabilis]
 gi|194684638|emb|CAR46553.1| tyrosine recombinase [Proteus mirabilis HI4320]
 gi|227162688|gb|EEI47655.1| tyrosine recombinase [Proteus mirabilis ATCC 29906]
          Length = 307

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 155/319 (48%), Gaps = 28/319 (8%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           ++PE +S  +     ++L  +E+ER LS +T+++Y+   RQ +         KI   ++ 
Sbjct: 6   DVPETLSLAI----DSFLSYIEVERRLSPVTVENYQ---RQLMTIAQMMVAIKINQWSL- 57

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            L    +R  ++K     +   SL    S ++SFL +   + +   +    +R  K    
Sbjct: 58  -LESQHVRMLLAKSHRSGLQPASLALRFSALRSFLDWQVSQGMLAVNPAKGVRTPKSGRH 116

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP+ ++  +   L+ N+ L        +  R+  +L ++YG GLR+SE  +L   +I   
Sbjct: 117 LPKNMDVDEVSQLM-NIDLKDP-----LSVRDRTMLEVMYGAGLRLSELTNLNINDIDLQ 170

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNP 240
           +  +R+ GKG K R VPL     + +  ++ +     P D  + I         GK L+ 
Sbjct: 171 EGEVRVLGKGSKERKVPLGRKAVEWLQHWFAMRELYSPEDTAVFISTK-----SGKRLSV 225

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              Q+         GL      H LRHSFATHLL + GDLR++Q +LGH  LSTTQ+YT+
Sbjct: 226 RSVQKRFELWGVKQGLSSHVNPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQVYTH 285

Query: 301 VNSKNGGDWMMEIYDQTHP 319
           ++ ++    + ++YD  HP
Sbjct: 286 LDFQH----LAKVYDAAHP 300


>gi|188586009|ref|YP_001917554.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|254799348|sp|B2A335|XERC_NATTJ RecName: Full=Tyrosine recombinase xerC
 gi|179350696|gb|ACB84966.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 299

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 153/306 (50%), Gaps = 21/306 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L+ L+ E+ LS  T+ +Y  D  Q   F      E+  +    ++++  IR F++  +
Sbjct: 7   DFLEFLKGEKNLSHYTVDNYYKDLTQAENFF----NEQFELYQWDEVTHKHIRHFLAYLK 62

Query: 80  TQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            +     +  R LS I+S  K+L ++ KI + ++ L +   KK   LP  L+ ++   L+
Sbjct: 63  DKNYEKSTTARKLSAIRSLFKFLTREEKIRSNTSAL-LATPKKERKLPEFLSIEEVEMLI 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +      +        R+ AIL + Y  G+R+ E   L  QN+      L++ GKG+  R
Sbjct: 122 N------APGDDPFGLRDKAILEVFYCSGIRLGELWGLDLQNLDLQTGYLKVTGKGNIER 175

Query: 199 IVPLLPSVRKAILEY-YDLCPFDLNLNIQL----PLFRGIRGKPLNPGVFQRYIRQLRRY 253
           + PL      AI +Y Y+  P  L  N  +     LF    G  ++    +R +++  + 
Sbjct: 176 LAPLGSFALAAIEDYLYNARPELLKKNKSVENCDALFLNKFGTRISQRSIRRRVKKYVQQ 235

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                  + H+LRHSFATHLL  G DLR++Q +LGH  +STTQIYT+VN       M E+
Sbjct: 236 TASEHRVSPHSLRHSFATHLLEGGADLRAVQELLGHVNISTTQIYTHVNQAR----MTEV 291

Query: 314 YDQTHP 319
           Y++ HP
Sbjct: 292 YNKYHP 297


>gi|152967083|ref|YP_001362867.1| phage integrase family protein [Kineococcus radiotolerans SRS30216]
 gi|151361600|gb|ABS04603.1| phage integrase family protein [Kineococcus radiotolerans SRS30216]
          Length = 344

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/294 (30%), Positives = 145/294 (49%), Gaps = 22/294 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L +L++ERGLS  TL +Y  D  +++ FLA        +    Q+    +  F+   R
Sbjct: 29  DYLAHLQVERGLSPNTLGAYRRDLARYVRFLAARG-----VHDPAQVDEAVVSGFVVALR 83

Query: 80  TQKIGDRSLKRSLSG-----IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           T   G   L  S +      ++ + ++L     + +   + +R       LP AL  ++ 
Sbjct: 84  TGADGAAVLTASSAARTASAVRGWHRFLHAEGRSDQDPAVLVRPPTPPRRLPTALTVEEV 143

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL-----TPQNIMDDQSTLR 189
             L++        E   +  R++A+L +LYGCG RISEA+ L     TP+ ++ +   +R
Sbjct: 144 RRLLEVAGPGGEGERSPVALRDAALLEVLYGCGARISEAVGLDVDDVTPE-VLGEGGLVR 202

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ----LPLFRGIRGKPLNPGVFQR 245
           ++GKG + R+VPL P  R A+  Y  L      L  Q      LF   RG  L+      
Sbjct: 203 LRGKGSRERLVPLGPCARSALERY--LARSRPQLAAQGRGTAALFLNTRGDRLSRQSAWA 260

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            ++   +  G+  + + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQ+Y 
Sbjct: 261 VLQSAAQRAGIARAVSPHTLRHSFATHLLREGADVRVVQELLGHASVATTQVYA 314


>gi|146312952|ref|YP_001178026.1| site-specific tyrosine recombinase XerD [Enterobacter sp. 638]
 gi|145319828|gb|ABP61975.1| tyrosine recombinase XerD subunit [Enterobacter sp. 638]
          Length = 298

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 158/304 (51%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +E+ L++ TL +Y  D    L  LA +   +    ++ Q    +++  +++R
Sbjct: 9   EQFLDALWLEKNLAENTLSAYRRD----LTMLAEWLAHRGL--SLEQAQRDDLQTLLAER 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   ++L + K+  +     + + K    LP+ L+E Q    V
Sbjct: 63  MDGGYKATSSARLLSAMRRLFQHLYREKLRADDPSALLASPKLPQRLPKDLSEAQ----V 118

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D +L   + +   ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG+K R
Sbjct: 119 DRLLQSPTVDVP-LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL       +  Y +   P+ LN ++I + LF   R + +    F   I+      G+
Sbjct: 178 LVPLGEEAVYWVETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYATLAGI 236

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292

Query: 316 QTHP 319
           Q HP
Sbjct: 293 QHHP 296


>gi|293393894|ref|ZP_06638201.1| tyrosine recombinase XerC [Serratia odorifera DSM 4582]
 gi|291423721|gb|EFE96943.1| tyrosine recombinase XerC [Serratia odorifera DSM 4582]
          Length = 304

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 148/302 (49%), Gaps = 25/302 (8%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L++ER LS LT  SY   +RQ    +A   E  + +   RQL    +R   ++ +  
Sbjct: 17  LRYLKVERQLSPLTQISY---SRQLQALIALAAE--LGVSEWRQLDAVTVRQLAARSKRA 71

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +   SL   LS ++SFL +L  +     +    +R  +    LP+ ++  +   L++  
Sbjct: 72  GLQSSSLALRLSALRSFLDWLVSQGQIVANPAKGIRTPRSGRHLPKNIDVDEMGQLLEID 131

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           L         +  R+ A+L ++YG GLR+SE + L  +++      + + GKG K R +P
Sbjct: 132 L------NDPLAVRDRAMLEVMYGAGLRLSELVGLDCRHVDMAAGEVWVMGKGSKERKLP 185

Query: 202 LLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +  +    +  +  L     P D  +      F   +GK ++P   Q+   +     G+ 
Sbjct: 186 IGRTAVTWLGHWLALRELFAPGDDAM------FLSNQGKRISPRNVQKRFAEWGVKQGVS 239

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRHSFATH+L + GDLR++Q +LGH  L+TTQIYT+++ ++    +  +YD  
Sbjct: 240 SHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----LANVYDAA 295

Query: 318 HP 319
           HP
Sbjct: 296 HP 297


>gi|206577103|ref|YP_002241126.1| tyrosine recombinase XerC [Klebsiella pneumoniae 342]
 gi|206566161|gb|ACI07937.1| tyrosine recombinase XerC [Klebsiella pneumoniae 342]
          Length = 300

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 149/299 (49%), Gaps = 19/299 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L +ER LS +TL +Y+   RQ    +A   E    +++ +Q    ++R+F  + R  
Sbjct: 14  LRYLGVERQLSPITLTNYQ---RQLDALIALADEA--GLKSWQQCDAAQVRSFAVRSRRA 68

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +G  SL   LS ++SF  ++  +     +    +   K    LP+ ++      L+D  
Sbjct: 69  GLGPASLALRLSALRSFFDWMVSQGELAANPAKGIAAPKIPRHLPKNIDVDDVNRLLDID 128

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           L         +  R+ A+L ++YG GLR+SE ++L  +++  +   + + GKG K R +P
Sbjct: 129 L------NDPLAVRDRAMLEVMYGAGLRLSELVNLDIKHLDLESGEVWVMGKGSKERRLP 182

Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +  +    I  + DL   F  + +    LF    GK ++    Q+   +     GL    
Sbjct: 183 IGRNAVAWIEHWLDLRGLFGTDDD---ALFLSKLGKRISARNVQKRFAEWGIKQGLNSHV 239

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
             H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  +YD  HP
Sbjct: 240 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 294


>gi|157374032|ref|YP_001472632.1| tyrosine recombinase XerD [Shewanella sediminis HAW-EB3]
 gi|157316406|gb|ABV35504.1| tyrosine recombinase XerD [Shewanella sediminis HAW-EB3]
          Length = 304

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/303 (32%), Positives = 150/303 (49%), Gaps = 22/303 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L   RGLS  TL +Y  D   F   +      + + Q + ++S   IR ++  R  
Sbjct: 18  FLDDLWSSRGLSDNTLSAYRTDLNHFDRHI------QRSGQQLTEVSQEGIRGYLDIRFE 71

Query: 81  QKIGDRSLKRSLSGIKSFLKYL---KKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           Q     S  R +S ++ F  +L   KK +I   + I   ++ K +  LP +L+E      
Sbjct: 72  QGFARTSSARLVSSLRRFYGFLVICKKIEINPTAQI---KSPKIARKLPGSLSEFD---- 124

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           VD +L     E   I+ R+ A+L LLY  GLR++E +SLT + +   Q  +R+ GKG K 
Sbjct: 125 VDRLLSEPDVEDS-IECRDKAMLELLYATGLRVTELVSLTMEQLSLRQGLVRVIGKGGKE 183

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       I  Y      +L    Q   LF   RG  +    F   I+      G+
Sbjct: 184 RLVPMGELAVDNIEYYLQGARAELLKQKQSDVLFPSKRGVMMTRQTFWHRIKLYALRSGV 243

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + +++ +
Sbjct: 244 STELSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKAR----LSQLHSE 299

Query: 317 THP 319
            HP
Sbjct: 300 HHP 302


>gi|242373543|ref|ZP_04819117.1| tyrosine recombinase XerC [Staphylococcus epidermidis M23864:W1]
 gi|242348906|gb|EES40508.1| tyrosine recombinase XerC [Staphylococcus epidermidis M23864:W1]
          Length = 286

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 156/298 (52%), Gaps = 22/298 (7%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L++ER  S+ TL+SY  D  QF  FL     E + + T     Y + R ++S   +  + 
Sbjct: 2   LKVERNFSEYTLKSYHDDLVQFNEFL---NSEHLELTT---FEYKDARNYLSYLYSNNLK 55

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             ++ R +S +++F +Y   +  +  +  + + + KK   LP+   E++        L  
Sbjct: 56  RTTVSRKISTLRTFYEYWMTQDESVVNPFVQLVHPKKEQYLPQFFYEEEM-----EALFR 110

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           T  + +    R+  I+ LLY  G+R+SE +++  ++I  +   +++ GKG+K R +P   
Sbjct: 111 TVEQDRTKGMRDRVIIELLYATGIRVSELVNIKIKDIDMNLPGVKVLGKGNKERFIPFGE 170

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQ--LRRYLGLPLSTT 261
             +++I  Y D       ++ +  L   ++G+P+   GV  RY+    ++R  G+     
Sbjct: 171 FCKQSIERYLDEFQPRKAVDHEY-LIVNMKGEPITERGV--RYVLNDVVKRTAGVT-DIH 226

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++     + ++Y   HP
Sbjct: 227 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQ----LRKVYLNAHP 280


>gi|240127425|ref|ZP_04740086.1| putative site-specific recombinase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268685800|ref|ZP_06152662.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-93-1035]
 gi|268626084|gb|EEZ58484.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-93-1035]
          Length = 305

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 146/306 (47%), Gaps = 13/306 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+N+ +  G S+ T+ +Y  D  +    LA    E       + LS  +  A + +   
Sbjct: 13  YLENI-VREGKSEHTVAAYRRDLEELFALLAQMPSEDAG-GVPQDLSRRDFTAALRRLSQ 70

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  R+L R LS  + +  +L KR +       +++  K+   +P+AL ++    ++D 
Sbjct: 71  RGLDGRTLARKLSAWRQYCAWLVKRGLMRADPTADIKPPKQPERVPKALPQEWLNRMLDL 130

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GKG K R V
Sbjct: 131 PVDGGDP----LAVRDYALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQV 186

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           PL     +A+  Y    P     +    LF G  G  L+    Q+ +       G     
Sbjct: 187 PLTGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLESWAAQYGDGRHV 243

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +YD+ HP 
Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAHPR 299

Query: 321 ITQKDK 326
             ++D+
Sbjct: 300 AKRQDE 305


>gi|159037538|ref|YP_001536791.1| site-specific tyrosine recombinase XerD [Salinispora arenicola
           CNS-205]
 gi|157916373|gb|ABV97800.1| tyrosine recombinase XerD [Salinispora arenicola CNS-205]
          Length = 345

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 146/313 (46%), Gaps = 21/313 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L +L +ERGL+  TL SY  D  ++L  LA      + +  +  +   ++   +++ 
Sbjct: 38  RGYLDHLAVERGLAANTLASYRRDLGRYLDTLA-----SVGVTELASVDPGQVEVHLARL 92

Query: 79  RTQKIGDRSLKRSLSG-----IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           R    G   L  S +      ++   ++  +  +       ++R       LPRAL    
Sbjct: 93  RAGDDGHPPLAASSAARAASAVRGLHRFALREGLAGVDPSRDLRPAAPPRRLPRALPVDD 152

Query: 134 ALTLVDNV-LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
            L L++    +  + +   +  R+ A+L  LYG G RISEA+ +   ++  D   + ++G
Sbjct: 153 VLKLLEAAGSVAATGDGAPLALRDRALLEFLYGTGARISEAVGVAVDDLDTDTGAVLLRG 212

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQL 250
           KG + R+VP+      A+  Y     P         P +F   RG PL+       +R  
Sbjct: 213 KGGRNRLVPIGGYAVAALRGYLVRARPGLAAAGRGTPAVFLNARGGPLSRQGAWAILRGA 272

Query: 251 RRYLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
            R  GLP     + + HTLRHS+ATHLL  G D+R +Q +LGH  ++TTQ+YT V  +  
Sbjct: 273 ARRAGLPGVGAEAVSPHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQVYTMVTVQR- 331

Query: 307 GDWMMEIYDQTHP 319
              + E+Y   HP
Sbjct: 332 ---LREVYATAHP 341


>gi|317153262|ref|YP_004121310.1| tyrosine recombinase XerD [Desulfovibrio aespoeensis Aspo-2]
 gi|316943513|gb|ADU62564.1| tyrosine recombinase XerD [Desulfovibrio aespoeensis Aspo-2]
          Length = 307

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 147/303 (48%), Gaps = 22/303 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+++ IE+GLS+ +L  Y  D    L FL    EEK     +  L+   +  +++  R
Sbjct: 20  GYLEHVLIEKGLSENSLSGYSADLASLLAFL----EEKSF--RLEDLTERTLFLYLTYLR 73

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +  RSL R LS ++ F  +   ++   E     + N K    LP  L  ++    + 
Sbjct: 74  ARGLQSRSLARHLSSLRGFFAFALDQRWYKEDPGHLLENPKLPKKLPEFLTREE----MS 129

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            VL      TK +  R+ A+L LLY  GLR+SE + +   +       LR+ GKG K R+
Sbjct: 130 RVLALPETATK-LGMRDQAMLELLYAAGLRVSELIEMKVLDYDAQTGLLRVFGKGAKERL 188

Query: 200 VPLLPSVRKAILEYYDL---CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           VP+   V + +L  Y L     F   ++    +F    GK L      + I+      G+
Sbjct: 189 VPI-HYVAQDVLSRYLLNTRPAFRPAVDF---MFLNRSGKGLTRQGVWKLIKTYADKAGI 244

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S + HT RHSFATHLL  G DLR++Q +LGH  +S T+IYT++ +      +  I+ Q
Sbjct: 245 KRSISPHTFRHSFATHLLEGGADLRTVQMLLGHSDISATEIYTHIQAGR----LRSIHQQ 300

Query: 317 THP 319
            HP
Sbjct: 301 YHP 303


>gi|229496921|ref|ZP_04390628.1| tyrosine recombinase XerD [Porphyromonas endodontalis ATCC 35406]
 gi|229316168|gb|EEN82094.1| tyrosine recombinase XerD [Porphyromonas endodontalis ATCC 35406]
          Length = 313

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 150/294 (51%), Gaps = 24/294 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + ++L++E+ LS  ++ +Y  D  + +     Y E+      + Q+ Y  +  F++  
Sbjct: 22  EAFKRHLQLEQALSPNSISAYLMDLGKLIA----YAED--CALPLDQVEYEHLETFVASL 75

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               I  RS+ R ++G+KSF ++L   +   +     + + K    LP   + ++    +
Sbjct: 76  YDCGIAARSIARIIAGVKSFYRFLYVDQYIQKDPTELLESPKLELHLPTVFSVEE----I 131

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D++L    + +K    RN AI+ +LY CGLR+SE   L   ++  +++ + + GKG K R
Sbjct: 132 DHILEAIDY-SKNDALRNRAIIEVLYSCGLRVSELCHLKLGDVHPEEAFVHVYGKGCKER 190

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-------LFRGIRGKPLNPGVFQRYIRQLR 251
           +VP+ P    A+ +Y        + +  +P       +F    GK +        IR L 
Sbjct: 191 LVPISPVALDALAQYL------ASPHRPVPKAGQEDYIFLSRLGKAIARNSVFDLIRALS 244

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
              G+  + + HT RHSFATHLL  G +L++I+ +LGH  +STT+IYT+++S+ 
Sbjct: 245 EAAGITKTVSPHTFRHSFATHLLDGGANLQAIRLMLGHEDISTTEIYTHIDSQT 298


>gi|256827139|ref|YP_003151098.1| site-specific recombinase XerD [Cryptobacterium curtum DSM 15641]
 gi|256583282|gb|ACU94416.1| site-specific recombinase XerD [Cryptobacterium curtum DSM 15641]
          Length = 315

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 152/318 (47%), Gaps = 18/318 (5%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E  S ELL  R  +L+ L      S  T+++Y  D   +L F      E+  I  + + S
Sbjct: 8   ESHSAELLVAR--YLEELTSTGRASAHTIRNYGNDLADWLRF-----AERSNINAL-EPS 59

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
           + +IR ++      +    ++ R LS ++ F ++ +   +   +    + +LK+   LP 
Sbjct: 60  HRDIRLYLVDLDAARYAKATINRRLSSLRGFFRWGQIAGLFEHNPAEAVSSLKEGKHLPH 119

Query: 128 ALNEKQALTLVD-NVLLHTSHETKW---IDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            +     + ++  N       +T+    I  R+ A+L  LY CG RISEA +LT   +  
Sbjct: 120 RIPPSDMVRILRVNGPRDEQGKTRLQTPIQMRDQAVLEFLYACGARISEAAALTVDAVDL 179

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPG 241
           D+ T R+ GKG K R+V L     +++  Y      DL      P   F   RG P+N  
Sbjct: 180 DRGTARLFGKGSKERVVYLHALAIESMGAYLHFARNDLLRGRTDPGYFFLSTRGLPMNTD 239

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             ++  +      G+  + T H +RH+FA+ LL  G DLRS+Q +LGH  LSTTQIYT+V
Sbjct: 240 AIRKMFKTTLIQAGVRAAYTPHDMRHTFASDLLEGGADLRSVQELLGHSSLSTTQIYTHV 299

Query: 302 NSKNGGDWMMEIYDQTHP 319
           +       M +++ Q HP
Sbjct: 300 SIAQ----MRKVHKQAHP 313


>gi|296135962|ref|YP_003643204.1| tyrosine recombinase XerD [Thiomonas intermedia K12]
 gi|295796084|gb|ADG30874.1| tyrosine recombinase XerD [Thiomonas intermedia K12]
          Length = 317

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 149/303 (49%), Gaps = 23/303 (7%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E GLS  TL +Y  D      +LAF     +   T+R     +++A+I+ R  Q   
Sbjct: 28  LWLEDGLSPNTLAAYRRDLTLMARWLAFSRRPPLIEATLR-----DVQAYIAARFVQSKA 82

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R L  ++ F ++  +  + ++   L +   ++    P+ L+E Q    V+ +L  
Sbjct: 83  TSS-NRRLVVLRRFYRWALREHLRSDDPTLQLDTARQPPRRPKTLSEAQ----VEALLAA 137

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
              +T  +  R+ A+L LLY  GLR+SE ++L    +  DQ  ++I GKG K R+VP   
Sbjct: 138 PEVDTP-LGLRDRAMLELLYASGLRVSELVALPVVRVSLDQGVVQIAGKGGKERLVPFGS 196

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP-LFRGIRG-------KPLNPGVFQRYIRQLRRYLGL 256
           + +  +  Y      +L      P LF   R          +   +F   I+   R  G+
Sbjct: 197 AAQDWLQNYLRTARHELLQGRDSPFLFVTARSGQSARETTGMTRQMFWMRIKAYARKAGI 256

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            +  + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT++  +     +  ++ +
Sbjct: 257 DVPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHIARER----LKTLHAR 312

Query: 317 THP 319
            HP
Sbjct: 313 HHP 315


>gi|254448186|ref|ZP_05061649.1| tyrosine recombinase XerD [gamma proteobacterium HTCC5015]
 gi|198262312|gb|EDY86594.1| tyrosine recombinase XerD [gamma proteobacterium HTCC5015]
          Length = 311

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 152/308 (49%), Gaps = 26/308 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L NL +  GLS  TL SY  D RQ   FL       +      Q     ++ F++ R
Sbjct: 21  RRFLDNLWMSHGLSDNTLGSYGSDLRQLSSFLGDKGSHLL------QADRGALQDFLAFR 74

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            +++    S  R LS ++ F +Y        E     + + K    LP++++E+    L+
Sbjct: 75  LSKRGKASSAARLLSSLRRFYRYQVSEGRLQEDPTALLESPKLGVRLPKSISEEHIERLL 134

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                HT      +  R+  +L +LY  GLR++E ++L  + I      +++ GKG K R
Sbjct: 135 RAPDTHTD-----LGLRDRLMLEMLYASGLRVTELVTLRLEQIDAHHGIVKVMGKGRKER 189

Query: 199 IVPLLPSVRKAILEYYDLCPFDL--NLNIQLP-LFRGIRGKPLNP----GVFQRYIRQLR 251
           +VP+       + EY      DL    +   P LF   RG  +       V ++Y +Q  
Sbjct: 190 LVPIGDEALAWLGEYLQSARPDLLKGRDTTTPFLFVTRRGGGMTRQTAWNVIKKYAQQA- 248

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            +LG  LS   HTLRH+FATHLL++G DLR++Q +LGH  LSTTQIYT+V ++     + 
Sbjct: 249 -HLGGDLS--PHTLRHAFATHLLNHGADLRAVQMLLGHSDLSTTQIYTHVANER----LR 301

Query: 312 EIYDQTHP 319
           + ++Q HP
Sbjct: 302 QFHEQHHP 309


>gi|329956554|ref|ZP_08297151.1| tyrosine recombinase XerD [Bacteroides clarus YIT 12056]
 gi|328524451|gb|EGF51521.1| tyrosine recombinase XerD [Bacteroides clarus YIT 12056]
          Length = 316

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 143/289 (49%), Gaps = 20/289 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + Q + +E+ LS  T  +Y  D ++ L FL     E I I  +   +  +++ F +  
Sbjct: 18  RKYQQYIRLEKALSSNTFDAYMTDLQKLLHFL---DGENIDIPDV---TPDDLQRFAAGL 71

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               I  RS  R LSGIKSF  +L             +   K    +P  L  ++    +
Sbjct: 72  HDIGIHPRSQARILSGIKSFFHFLVIADYLEADPSELLEGPKIGFKIPEVLTIEE----I 127

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D ++     E K    RN AIL  LY CGLR+SE  +L   ++  ++  ++++GKG K R
Sbjct: 128 DRIISTVDMEKKE-GQRNRAILETLYSCGLRVSELCNLKISDLYFEEGFIKVEGKGSKQR 186

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLN-----IQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +VP+ P   K I  ++     D NL       +  +F    G  ++  +    I++L   
Sbjct: 187 LVPISPRAIKEIKYWFA----DRNLGKIKKGYEDYVFLARWGNRISRIMVFHMIKELAEK 242

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            G+  + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++
Sbjct: 243 AGITKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHID 291


>gi|91776681|ref|YP_546437.1| tyrosine recombinase XerD [Methylobacillus flagellatus KT]
 gi|91710668|gb|ABE50596.1| Tyrosine recombinase XerD [Methylobacillus flagellatus KT]
          Length = 277

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 147/290 (50%), Gaps = 16/290 (5%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           ++K TL SY  D   F  +L     ++   + + +    +I+ FI+ R  Q    RS+ R
Sbjct: 1   MAKNTLTSYRQDLAAFAAWL-----QQTRRRAMLEAGPEDIQGFIAFRFPQS-QPRSISR 54

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            ++ ++ F ++  +    +    +++ + K   SLP++L+E +   L++    +T+    
Sbjct: 55  LVASLRRFYRFALRESYISADPSIHIESPKLPRSLPKSLSEDEVERLINAPDTNTN---- 110

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
            +  R+ A+L  LY  GLR+SE + +    +      +RI GKG K R+VPL     + +
Sbjct: 111 -LGLRDRAMLETLYATGLRVSELVGMHVTELSLTDGVVRITGKGSKTRLVPLGEQAVEWL 169

Query: 211 LEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
             Y  +  P  L   +   LF   RG+ +    F   I++     G+  S + H LRH+F
Sbjct: 170 ARYLQEGRPSILQQRLSDHLFVTQRGEGMTRQAFWYLIKRYAAIAGIQASLSPHVLRHAF 229

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           ATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++ Q HP
Sbjct: 230 ATHLLNHGADLRVVQMLLGHADISTTQIYTHVARER----LKRLHQQHHP 275


>gi|228475035|ref|ZP_04059763.1| tyrosine recombinase XerC [Staphylococcus hominis SK119]
 gi|228271020|gb|EEK12408.1| tyrosine recombinase XerC [Staphylococcus hominis SK119]
          Length = 297

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 164/313 (52%), Gaps = 24/313 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +L  L++ER  S  TL++Y  D  QF  FL    E+++    +R   Y + R ++S 
Sbjct: 5   QKKFLNMLKVERNFSDHTLKAYHDDLAQFNQFL----EQELL--NLRTFEYKDARNYLSY 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             +  +   ++ R +S +++F ++   +  +  +  + + + KK   LP+   E++   L
Sbjct: 59  LYSNNLKRTTVSRKISTLRTFYEFWMTQDTSVNNPFIQLVHPKKEQYLPQFFYEEEMEAL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            + V    S++ K    R+  ++ LLY  G+R+SE +++   ++  +   +++ GKG+K 
Sbjct: 119 FNTV----SNDAKK-GLRDRVVIELLYATGIRVSELVNIKVMDLDMNLPGVKVLGKGNKE 173

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQ--LRRY 253
           R VP     R++I +Y +   P  L       L   ++G P+   GV  RY+    + R 
Sbjct: 174 RFVPFGEFCRQSIEQYLEKFKP--LKSKSHPYLIVNMKGDPITERGV--RYLLNDVVERT 229

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+      H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++     + ++
Sbjct: 230 AGVT-EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ----LRKV 284

Query: 314 YDQTHPSITQKDK 326
           Y   HP   ++ K
Sbjct: 285 YLSAHPRAKKESK 297


>gi|239618321|ref|YP_002941643.1| integrase family protein [Kosmotoga olearia TBF 19.5.1]
 gi|239507152|gb|ACR80639.1| integrase family protein [Kosmotoga olearia TBF 19.5.1]
          Length = 305

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/305 (32%), Positives = 153/305 (50%), Gaps = 27/305 (8%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           + FE   ER  + + LE  R LSK T++SY  D + F  +L  Y+ +       RQ+   
Sbjct: 1   MDFEDAVER--FAEYLEFVRNLSKNTVESYTRDLKHFGQYLEEYSLD------YRQVKRR 52

Query: 70  EIRAFISKRRTQKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           +I  F+ +       D      S+ R LS +K+F  +L    ++   N +   +L K+  
Sbjct: 53  DIEKFMKELSQGNFSDSRLSPSSVARHLSTLKTFYMFLY---VSGTVNKIPT-DLVKAPK 108

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MD 183
             R + E  +   V  +L   +     +  RN AI+ L+Y CGLR+SE  SLT ++I ++
Sbjct: 109 TRRRIPEYISYEEVQKIL--EAFPETHLGKRNRAIVALMYYCGLRVSEVCSLTLRDISLE 166

Query: 184 DQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLN 239
               +R++ GKGDK RIVPL P   + I +Y    D  P D N +I+L  F GIRG+P+ 
Sbjct: 167 SDPLVRVKSGKGDKDRIVPLTPDAVRIISDYLKHRDRFP-DANRHIKL--FVGIRGEPIT 223

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                + ++   + +        H  RHS ATHLL  G  ++ +Q ILGH  +STT IY 
Sbjct: 224 RKSVNKMLQNHVKKIFPDKHLHPHIFRHSCATHLLQRGASIKIVQEILGHANISTTSIYL 283

Query: 300 NVNSK 304
           ++  +
Sbjct: 284 HITDR 288


>gi|34223075|sp|Q9KJF6|XERC_STAAU RecName: Full=Tyrosine recombinase xerC
 gi|9622622|gb|AAF89877.1| putative site-specific recombinase XerC [Staphylococcus aureus]
          Length = 298

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/322 (30%), Positives = 163/322 (50%), Gaps = 42/322 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +L  L++ER  S+ TL+SY+ D  QF  FL    +E + + T     Y + R ++S 
Sbjct: 5   QEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLE---QEHLQLNT---FEYRDARNYLSY 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNEKQ 133
                +   S+ R +S +++  +Y     +T + NI+N    + + KK   LP+   E++
Sbjct: 59  LYLNHLKRTSVSRKISTLRTLYEYW----MTLDENIINPFVHLVHPKKEKYLPQFSLEEE 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L   V   TS      + R+  IL LLY  G+R+SE +++  Q+I    + + + GK
Sbjct: 115 MEALFTTVEKDTSK-----NLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDL------CPFD---LNLNIQLPLFRGIRGKPLNPGVFQ 244
           G K R VP     R++I  Y +       C  D   LN+  +    RG+R   LN  V  
Sbjct: 170 GSKERFVPFGAYCRQSIENYLEHFKPIQSCNHDFLILNMKGEAITERGVR-YVLNDIV-- 226

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
                 +R  G+      H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++
Sbjct: 227 ------KRTAGVS-EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQ 279

Query: 305 NGGDWMMEIYDQTHPSITQKDK 326
                + ++Y   HP   ++++
Sbjct: 280 Q----LRKVYLNAHPRAKKENE 297


>gi|256391647|ref|YP_003113211.1| tyrosine recombinase XerD [Catenulispora acidiphila DSM 44928]
 gi|256357873|gb|ACU71370.1| tyrosine recombinase XerD [Catenulispora acidiphila DSM 44928]
          Length = 306

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 152/316 (48%), Gaps = 24/316 (7%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           VS +L    +  L++L +ERGLS  TL +Y  D  ++ +FL   T ++     I +    
Sbjct: 4   VSDDLDSRVKAHLEHLSVERGLSANTLAAYRRDLSRYRVFLD--TRDRANFSDIDR---A 58

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++ AF++    Q     S  R++S ++   ++             ++   +    LP+AL
Sbjct: 59  DVSAFLAS--LQDGAASSAARTMSAVRGLHRFAVAEGWVGVDVSDDVAPPQVPMRLPKAL 116

Query: 130 NEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
                   +D++  LL  +   + +  R+ A+L  LY  G R+SEA++L   +I  +  T
Sbjct: 117 P-------LDDIERLLAATEIDEPMALRDRALLEFLYSTGARVSEAVALDVDDIDREDRT 169

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL----PLFRGIRGKPLNPGVF 243
           + + GKG K R+VP+     +A+ +Y      +L    +      LF   RG  L     
Sbjct: 170 VVLDGKGGKQRLVPVGSYACRAVDDYLVRLRPELTRKARSGNGGALFLNARGGRLTRQGA 229

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              +  +   +GL    + HTLRHSFATHLL  G D+R++Q +LGH   +TTQIYT V  
Sbjct: 230 WTVLGAVAERVGLAGRVSPHTLRHSFATHLLDGGADIRTVQELLGHSSATTTQIYTRVTV 289

Query: 304 KNGGDWMMEIYDQTHP 319
               D + E+Y  +HP
Sbjct: 290 ----DRLREVYATSHP 301


>gi|313672931|ref|YP_004051042.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939687|gb|ADR18879.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672]
          Length = 297

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 162/318 (50%), Gaps = 24/318 (7%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++ EL+K  Q++++    +  LS+ ++++Y+ D  +   F   Y            L+ +
Sbjct: 3   ITEELVKRFQHYMK---YDLSLSENSIEAYKRDLMELTRFTKDY-----------NLTPS 48

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++ +++S  R + +   S+ R+LSGI +F  +L + KI  ++ + ++   KK   LP+ L
Sbjct: 49  DLVSYMSHLRKKGLSIESILRNLSGISAFYDFLIQEKIFDKNPVASISKPKKWEKLPKFL 108

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           N ++        L++   ++     R++ IL   Y  G+R+SE +     +I   +  + 
Sbjct: 109 NFEEV-----EALINAPDKSTPTGYRDNIILKTFYSTGMRVSELVKCKTSDIDFKRGIVS 163

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           + GKG K R +P+  S++  + +Y ++   + +       LF      PL        I+
Sbjct: 164 VVGKGSKQRFLPIYQSLQDELKQYIEVRHRYFIKEKDNGFLFLNKNSAPLTRVYCWMLIK 223

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +  +  G+    + HTLRHSFATHLL+NG DLR+IQ +LGH  ++TT+IYT++       
Sbjct: 224 KYCKKAGIKKDISPHTLRHSFATHLLTNGADLRTIQLLLGHSDIATTEIYTHITDNK--- 280

Query: 309 WMMEIYDQTHPSITQKDK 326
            +  I +Q HP    ++K
Sbjct: 281 -VRSILEQFHPRFKMRNK 297


>gi|119964153|ref|YP_947420.1| tyrosine recombinase XerD [Arthrobacter aurescens TC1]
 gi|119951012|gb|ABM09923.1| tyrosine recombinase XerD [Arthrobacter aurescens TC1]
          Length = 319

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 147/330 (44%), Gaps = 62/330 (18%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI---- 75
           ++LQ++ +ERGL+  TL +Y  D  ++  FLA    E+        ++   + AF+    
Sbjct: 18  DYLQHVGVERGLAANTLSAYRRDLARYSNFLAAQGVEQPG-----SITRHHVTAFVQALS 72

Query: 76  -SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
                   +G RS  R++  ++   K+      TT     ++        LP+A++  + 
Sbjct: 73  DGSDGAAALGVRSAARTVVAVRGLHKFWALEGTTTADPASDVHPPMPGKRLPKAISVGE- 131

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-----DDQSTLR 189
              V  +L     +T     R+ A+L  LY  G RISEA+ L   ++       D + +R
Sbjct: 132 ---VTRILEAAGSDTA-TGLRDRALLEFLYSTGARISEAVGLDVDDVSLEDTGGDPAIVR 187

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-------NPGV 242
           + GKG K R+VPL     +A+  Y                   +RG+PL        P +
Sbjct: 188 LFGKGSKERLVPLGSFGARAVGAYV------------------VRGRPLLASKGKGTPAL 229

Query: 243 F--QRYIRQLRRYLGLPLSTTA-----------HTLRHSFATHLLSNGGDLRSIQSILGH 289
           F   R  R  R+     L T A           HTLRHSFATHLL  G D+R +Q +LGH
Sbjct: 230 FLNARGGRISRQSAWTILKTAAEKANITKDVSPHTLRHSFATHLLEGGADVRVVQELLGH 289

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
             ++TTQ+YT V +    D + E+Y   HP
Sbjct: 290 ASVTTTQVYTLVTA----DTLREVYAAAHP 315


>gi|227495065|ref|ZP_03925381.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436]
 gi|226831517|gb|EEH63900.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436]
          Length = 302

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 152/313 (48%), Gaps = 21/313 (6%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           +  LLK+   WL++    RG S  T ++YE D +  L +  F  +    I    Q     
Sbjct: 5   NLALLKDFTTWLEHF---RGFSTHTQRAYENDVKAALEY-CFGNDPFTPIDFNSQ----A 56

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +R+F+S R  +     S+ R  + ++ F  +  K+        L ++  K  N LP+ L+
Sbjct: 57  LRSFLSNRIRKGHARASVARYAASLRLFSSWALKQGHLNSDPSLKLKTAKVDNHLPQVLS 116

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            +Q   L  N L+ T+        R+ A   LLY CG+R++E + L   ++     TLR+
Sbjct: 117 LEQINQLF-NHLVETAQTGNVNAIRDWATSELLYSCGIRVAELVGLNLTSVDGSNRTLRV 175

Query: 191 QGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            GKG+K R+VP     L S+R  + +     P  +N      LF G RG  ++  + +  
Sbjct: 176 IGKGNKERLVPFGTPALESLRAWVTQGR---PQLVNERSGQALFLGSRGGRIDQRIVREC 232

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           + +     G+P+  + H LRH  ATH+L  G DLR++Q +LGH  L+TTQ YT+V++   
Sbjct: 233 LEKACVQAGVPV-LSPHGLRHCAATHMLEGGADLRTVQDMLGHASLATTQRYTHVDAVR- 290

Query: 307 GDWMMEIYDQTHP 319
              +  I  Q HP
Sbjct: 291 ---LSNIMRQAHP 300


>gi|88855245|ref|ZP_01129910.1| tyrosine recombinase [marine actinobacterium PHSC20C1]
 gi|88815773|gb|EAR25630.1| tyrosine recombinase [marine actinobacterium PHSC20C1]
          Length = 302

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 138/297 (46%), Gaps = 12/297 (4%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  +RG S  T++SY  D       + F  E +        L       + + +    + 
Sbjct: 14  LAADRGFSVHTVRSYRSD---LTNLVGFAVERRAIAADDLDLELLRDWLWHASQ--AGLA 68

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +L R  +  ++F  +L++   ++      ++  K    LPR LN  Q   ++ +V   
Sbjct: 69  KSTLARRAAASRAFSAWLEQTHQSSTDAAARLKAPKAERHLPRVLNRDQMADMLQSVATR 128

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            S     +  R+ AI+ LLY   LR+SE   L+  +I D + T+R+ GKG K R+VP   
Sbjct: 129 AS-TADPVALRDQAIVELLYASALRVSELAGLSLSDIDDSRLTVRVLGKGAKERVVPFGI 187

Query: 205 SVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
               AI +Y D     L    +   PLF G RGK ++       I  L   +     +  
Sbjct: 188 PAHHAISDYLDRGRPQLIEETDGSAPLFVGARGKRVSTRTVYEVIAHLLAEVPGSGGSGP 247

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HTLRH+ ATHLL  G DLR++Q +LGH  L TTQ+YT+V+++     + E Y   HP
Sbjct: 248 HTLRHTAATHLLDGGADLRAVQEMLGHASLGTTQLYTHVSTER----LRESYRTAHP 300


>gi|225163580|ref|ZP_03725889.1| tyrosine recombinase XerD [Opitutaceae bacterium TAV2]
 gi|224801815|gb|EEG20102.1| tyrosine recombinase XerD [Opitutaceae bacterium TAV2]
          Length = 342

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 140/302 (46%), Gaps = 11/302 (3%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++   LE+ERG S  T+++YE D  Q   FL    + +  +   R ++   +  ++    
Sbjct: 45  DFCAVLELERGRSDHTVEAYESDLTQCATFL----QRQKKLADWRAVTGAAVTDWLYSLD 100

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  SL R LS ++ F ++L + +   +     ++  K    +P  LN ++   L+ 
Sbjct: 101 GDDYSVASLARKLSALRMFARHLVREQTRPDDFTELLQGPKLVRRVPGTLNAEEVARLLA 160

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                          R+ AIL L Y  GLR+SE   L  Q +  +   LR+ GKG K R+
Sbjct: 161 APGGGGGGGGPHA-LRDRAILELFYSSGLRVSELSGLLLQQVDLENGMLRVFGKGAKERV 219

Query: 200 VPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           VP+    R+A+  Y       F         LF   RG  ++  +    +++  +  G+ 
Sbjct: 220 VPVGSKAREALATYLTAARHHFVKEKKTGSQLFLSERGTAISRKMLWVLVKKYTKLAGIT 279

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRHSFATHLLS G DLR+IQ +LGH  + TTQIYT V  +     +++ + + 
Sbjct: 280 KPVKPHLLRHSFATHLLSGGADLRAIQEMLGHATIGTTQIYTAVEERR----LLDQHARF 335

Query: 318 HP 319
           HP
Sbjct: 336 HP 337


>gi|83942296|ref|ZP_00954757.1| tyrosine recombinase XerD [Sulfitobacter sp. EE-36]
 gi|83846389|gb|EAP84265.1| tyrosine recombinase XerD [Sulfitobacter sp. EE-36]
          Length = 324

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 146/304 (48%), Gaps = 30/304 (9%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ELL     +L+    E G +  T  +Y  D + F  FLA  T + +T+         +I 
Sbjct: 4   ELLHWISTFLEAQAAELGAATNTQLAYGRDLKDFDSFLARRTLDFVTV------GRKDIE 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           A++     Q +   +  R LS IK   ++  +    +++  + +    +   LP+ L+E 
Sbjct: 58  AYLVWCDAQGLAKSTRARRLSAIKQLYRFAFEEGWRSDNPAIQIAGPGQDKRLPKVLSED 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L+D    H+   T     RN+ ++ LLY  G+R+SE +SL       D   L I G
Sbjct: 118 EVDQLLDAAR-HSGRNTS-DQLRNTCLMELLYATGMRVSELVSLRVSAARGDPRLLLIMG 175

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-----YI 247
           KG K R+VPL    R+A+  +  L   D             +GKP +  +F       Y+
Sbjct: 176 KGGKERLVPLSDPSREALAAW--LVQRDRTDEAAQ-----AKGKPASIYLFPSRGSAGYL 228

Query: 248 RQLRRYLGL----------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
            + R YL +          P   T HTLRH+FATHLL+NG DLR+IQ++LGH  ++TT+I
Sbjct: 229 TRHRFYLLIKEFALTAGVDPSKVTPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEI 288

Query: 298 YTNV 301
           YT+V
Sbjct: 289 YTHV 292


>gi|309775658|ref|ZP_07670657.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916564|gb|EFP62305.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53]
          Length = 304

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 149/311 (47%), Gaps = 21/311 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +LQ ++     S  T  +Y+ D R+F+ FL     +   ++ ++      +  +I+  R 
Sbjct: 8   FLQYMDSLNSGSVHTRDAYQRDIREFISFL-----QAEGVEELQDADRILVMNYIASLRE 62

Query: 81  Q-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +     ++ + ++ R LS ++SF +YL +     ++  L  +  K+S  +P  L   +  
Sbjct: 63  KSGVSGEMKNSTIARKLSSLRSFYRYLNEYVGIAQNPFLYFKTPKRSKRIPEFLFYDEMD 122

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           T + +  L T         R+ A+  L+Y CGLR+SEA SL  ++I   +  L I GKG+
Sbjct: 123 TFLSSFALDTPD-----GLRDRAMFELMYACGLRVSEAASLRLRDIDLQERILTITGKGN 177

Query: 196 KIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRY 253
           K RIVP      + +  Y   + P  +  + +  + F   RGK L     Q  ++     
Sbjct: 178 KQRIVPFYALAGELVERYLQQVRPLWMQPSQEHDIVFINQRGKGLTTRGIQYRMQVAAAG 237

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L +    H  RHSFATHLL NG DLR +Q +LGH  LSTTQ+Y +V  +     + + 
Sbjct: 238 CKLQVHVHPHMFRHSFATHLLDNGADLRVVQELLGHSSLSTTQVYVHVTQER----LKKA 293

Query: 314 YDQTHPSITQK 324
           Y   HP   +K
Sbjct: 294 YTHAHPRAQEK 304


>gi|157829635|pdb|1A0P|A Chain A, Site-Specific Recombinase, Xerd
          Length = 290

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 150/289 (51%), Gaps = 15/289 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +E+ L++ TL +Y    R   + + +     +T+ T +     +++A +++R
Sbjct: 7   EQFLDALWLEKNLAENTLNAYR---RDLSMMVEWLHHRGLTLATAQS---DDLQALLAER 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K   +    ++ + K    LP+ L+E Q   L+
Sbjct: 61  LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG+K R
Sbjct: 121 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 175

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL       +  Y +   P+ LN ++I + LF   R + +    F   I+      G+
Sbjct: 176 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 234

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++
Sbjct: 235 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATE 283


>gi|298528177|ref|ZP_07015581.1| tyrosine recombinase XerD [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511829|gb|EFI35731.1| tyrosine recombinase XerD [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 310

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 152/301 (50%), Gaps = 16/301 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L++  + +GL+  T+ +Y  D   FL FL    ++ + I     L Y     F+ ++
Sbjct: 12  RSFLEHALVIKGLAHQTVAAYTEDLSTFLEFLQEKGKDVLDINDQVLLVYL---MFLRRK 68

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q    RSL R ++ ++ F  YL ++ +  ++    + N K    LPR L+    +  V
Sbjct: 69  GLQ---SRSLARHMASLRGFYAYLHEQGLLKDNPAEMLENPKLPQLLPRVLS----IPEV 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +++L   S   K + AR+  +L +LY  GLR+SE ++L   +       +R+ GKG + R
Sbjct: 122 ESILSQPSTGDK-LGARDKTMLEMLYAAGLRVSELINLKVLDFDPQAGIIRVWGKGARER 180

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VPL  S  + +  Y        +  +   +F    GK L+     + I++     G+  
Sbjct: 181 LVPLHFSCMQWLDFYLQHWRSSFSPRVD-KVFINRSGKALSRQGVWKIIKKYTVMAGIKK 239

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HTLRHSFATHLL  G DLR++Q +LGH  ++ T+IYT+V S    D +   +D  H
Sbjct: 240 DVSPHTLRHSFATHLLEGGADLRTVQVLLGHSDITATEIYTHVQS----DRLKSAHDFFH 295

Query: 319 P 319
           P
Sbjct: 296 P 296


>gi|282164156|ref|YP_003356541.1| putative site-specific recombinase [Methanocella paludicola SANAE]
 gi|282156470|dbj|BAI61558.1| putative site-specific recombinase [Methanocella paludicola SANAE]
          Length = 272

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 123/228 (53%), Gaps = 26/228 (11%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           +S IKSF  +L + +  T +    + ++K     P  L + +   L++  L         
Sbjct: 68  MSIIKSFYSFLVENEYITANPAKGISSVKIDKKAPIYLTQDEMRALIETAL--------- 118

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
            D R++ I+ +LY  G+R+SE +++  Q+I  D++T+++ GKG K RIV L+P V KA L
Sbjct: 119 -DPRDNLIVKMLYATGVRVSELVNIKKQDIDLDRNTIKVFGKGAKERIV-LVPDVLKAQL 176

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           E Y  C          P   G +   LN    +R I+ L    G+    T H LRHSFAT
Sbjct: 177 ETY--CA-------GFP--EGQKLFDLNIRTVERDIKALAVRAGINKKVTPHKLRHSFAT 225

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           H+L NGG++ +IQ +LGH  L+TTQIYT+ +     D + ++Y  THP
Sbjct: 226 HMLQNGGNVVAIQKLLGHTSLNTTQIYTHYSV----DELKDMYAHTHP 269


>gi|309793966|ref|ZP_07688391.1| tyrosine recombinase XerD [Escherichia coli MS 145-7]
 gi|308122373|gb|EFO59635.1| tyrosine recombinase XerD [Escherichia coli MS 145-7]
          Length = 298

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 156/304 (51%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +E+ L++ TL +Y    R   + + +     +T+ T +     +++A +++R
Sbjct: 9   EQFLDALWLEKNLAENTLNAYR---RDLSMMVEWLHHRGLTLATAQS---DDLQALLAER 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K   +    ++ + K    LP+ L+E Q   L+
Sbjct: 63  LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG+K R
Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +V L       +  Y +   P+ LN ++I + LF   R + +    F   I+      G+
Sbjct: 178 LVSLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292

Query: 316 QTHP 319
           Q HP
Sbjct: 293 QHHP 296


>gi|238853068|ref|ZP_04643460.1| tyrosine recombinase XerC [Lactobacillus gasseri 202-4]
 gi|238834316|gb|EEQ26561.1| tyrosine recombinase XerC [Lactobacillus gasseri 202-4]
          Length = 307

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 152/319 (47%), Gaps = 24/319 (7%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECD---TRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +L+++ Q++L     ER  SK T+ SY  D    +QF        +E     +  ++   
Sbjct: 7   KLIEQFQDYLN---YERNYSKNTVSSYLNDLDEAKQFF-------KENGGFGSWDKVKSR 56

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++  F+     Q     +  R +S ++SF ++L KR++     +  +        LP+  
Sbjct: 57  DVEIFLQSLAAQNRSRTTQARKMSSLRSFYRFLVKREVLENDPMQTISLRLGEKKLPQFF 116

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            EK+   + D+++ H       +  RN A+  L Y  G+R+SE  SL    I      + 
Sbjct: 117 YEKEMRQVFDSLVGHDK-----LVVRNRAMFELFYATGMRLSEMASLKLDQIDFGLKIIL 171

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYI 247
           + GKG+K R VP       A+ EY D + P  L  N  L  +F   RG+ L     +  +
Sbjct: 172 VHGKGNKDRYVPFGKDAFDALREYRDDVRPALLGQNEDLGYVFLNNRGQKLTGRGIEYIM 231

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +Q+    G+      H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V  K+  
Sbjct: 232 QQVFIKAGVGGKVHPHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKH-- 289

Query: 308 DWMMEIYDQTHPSITQKDK 326
             +   Y +  P   +KD+
Sbjct: 290 --LQADYQKFFPRKDKKDE 306


>gi|171057831|ref|YP_001790180.1| tyrosine recombinase XerD [Leptothrix cholodnii SP-6]
 gi|170775276|gb|ACB33415.1| tyrosine recombinase XerD [Leptothrix cholodnii SP-6]
          Length = 286

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 145/300 (48%), Gaps = 18/300 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           +  L +E GLSK TL +Y  D +     L       +      Q S   +   I+ R  Q
Sbjct: 1   MDALWLEDGLSKNTLAAYRRDLQGLAAALPAQQSAGLL-----QASEAHLLGVITARHAQ 55

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                +  R L+  K F ++  +  + +    L +   ++   LP  L+E Q   L+   
Sbjct: 56  TRAS-TANRRLTVFKRFYRWALREALCSADPTLRLSAARQPKRLPGTLSEAQVEALLAAP 114

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSL-TPQNIMDDQSTLRIQGKGDKIRIV 200
            L T      +  R+ A+  L+YG GLR+SE +S+ T Q  + DQ  L++ GKG K R+V
Sbjct: 115 ALDTP-----LGLRDRAMFELMYGAGLRVSELVSIRTLQLALVDQ-VLKVLGKGAKERLV 168

Query: 201 PLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P     R  I  Y  +  P  L       LF  +R   +   +    +++  R  G+ + 
Sbjct: 169 PFGGEARHWIERYLTEARPALLAGRKCDALFVTVRCAGMTRQMAWNLVKKYARQAGITVP 228

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR++Q +LGH  +STTQIYT+V  +     + +++ + HP
Sbjct: 229 LSPHTLRHAFATHLLNHGADLRAVQLLLGHADISTTQIYTHVARER----LKQLHARHHP 284


>gi|288937766|ref|YP_003441825.1| tyrosine recombinase XerC [Klebsiella variicola At-22]
 gi|288892475|gb|ADC60793.1| tyrosine recombinase XerC [Klebsiella variicola At-22]
          Length = 300

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 149/299 (49%), Gaps = 19/299 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L +ER LS +TL +Y+   RQ    +A   E    +++ +Q    ++R+F  + R  
Sbjct: 14  LRYLGVERQLSPITLTNYQ---RQLDALIALADEA--GLKSWQQCDAAQVRSFAVRSRRA 68

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +G  SL   LS ++SF  ++  +     +    +   K    LP+ ++      L+D  
Sbjct: 69  GLGPASLALRLSALRSFFDWMVSQGELAANPAKGIAAPKIPRHLPKNIDVDDVNRLLDID 128

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           L         +  R+ A+L ++YG GLR+SE ++L  +++  +   + + GKG K R +P
Sbjct: 129 L------NDPLAVRDRAMLEVMYGAGLRLSELVNLDIKHLDLESGEVWVMGKGSKERRLP 182

Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +  +    I  + DL   F  + +    LF    GK ++    Q+   +     GL    
Sbjct: 183 IGRNAVTWIEHWLDLRGLFGTDDD---ALFLSKLGKRISARNVQKRFAEWGIKQGLNSHV 239

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
             H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  +YD  HP
Sbjct: 240 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 294


>gi|121634218|ref|YP_974463.1| putative integrase/recombinase [Neisseria meningitidis FAM18]
 gi|166918892|sp|A1KS31|XERC_NEIMF RecName: Full=Tyrosine recombinase xerC
 gi|120865924|emb|CAM09661.1| putative integrase/recombinase [Neisseria meningitidis FAM18]
          Length = 305

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 148/306 (48%), Gaps = 13/306 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+N+ +  G S+ T+ +Y  D  +    LA    E +     + LS  +  A + +   
Sbjct: 13  YLENI-VREGKSEHTVAAYRRDLEELFALLAQMPSEDVG-GVPQDLSRRDFTAALRRLSQ 70

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  R+L R LS  + +  +L +R +       +++  K+   +P+AL ++    ++D 
Sbjct: 71  RGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEWLNRMLDL 130

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GKG K R V
Sbjct: 131 PV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQV 186

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           PL     +A+  Y    P     +    LF G  G  L+    Q+ + Q     G     
Sbjct: 187 PLTGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHV 243

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +YD+ HP 
Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAHPR 299

Query: 321 ITQKDK 326
             ++D+
Sbjct: 300 AKRRDE 305


>gi|21230129|ref|NP_636046.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769880|ref|YP_244642.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188993095|ref|YP_001905105.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv.
           campestris str. B100]
 gi|34222916|sp|Q8PCQ9|XERD_XANCP RecName: Full=Tyrosine recombinase xerD
 gi|21111659|gb|AAM39970.1| integrase/recombinase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66575212|gb|AAY50622.1| integrase/recombinase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167734855|emb|CAP53066.1| tyrosine recombinase [Xanthomonas campestris pv. campestris]
          Length = 323

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 154/309 (49%), Gaps = 23/309 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L  L  E+G+++ TL SY  D    L  LA + +       ++    + +  ++  R
Sbjct: 28  QRFLDRLWAEQGVARQTLDSYRRD----LEGLARWRDG--AGGGLQGADRSALFDYLRWR 81

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
              +   RS  R LS ++ F     +  + ++     +   +   SLP+AL E Q    +
Sbjct: 82  TEARYAPRSNARLLSTLRGFYALCLRDGVRSDDPTALLDPPRLPRSLPKALTESQ----I 137

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D +L      T  +  R+ A+L L+Y  GLR+SE ++L    I   Q  LR+ GKG K R
Sbjct: 138 DALLAAPEIGTP-LGLRDRAMLELMYAAGLRVSELVTLPAVAINLRQGVLRVTGKGSKER 196

Query: 199 IVPLLPSVRKAILEYYDLCPFDLN-------LNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           +VPL    +  +  Y +     L+       ++ Q+PLF     +PL+   F   +++  
Sbjct: 197 LVPLGEESQHWLERYLETARPTLSERKAVPAVDGQVPLFIDAARRPLSRQQFWGLVKRYA 256

Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              G+ P + + H LRHSFATHLL++G DLR++Q +LGH  LSTTQIYT V  ++    +
Sbjct: 257 AVAGIDPDTVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQH----L 312

Query: 311 MEIYDQTHP 319
             ++ + HP
Sbjct: 313 QTLHARHHP 321


>gi|167753897|ref|ZP_02426024.1| hypothetical protein ALIPUT_02182 [Alistipes putredinis DSM 17216]
 gi|167658522|gb|EDS02652.1| hypothetical protein ALIPUT_02182 [Alistipes putredinis DSM 17216]
          Length = 298

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/297 (30%), Positives = 145/297 (48%), Gaps = 20/297 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIF-LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           +++E+ LS+ T++SY  D RQF  F L FY          R++    I  +++    Q  
Sbjct: 19  IKLEKRLSENTVESYMRDLRQFAHFILRFYDVPP------RKVEAPMIERYLALLYDQGR 72

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
              S  R+LSGI+SF  YL    +   +    +   K    LP  L  ++   +V  V  
Sbjct: 73  EKTSQARALSGIRSFYNYLMLTDVIDSTPTQFIDTPKFGRHLPDILTVEEIDRIVAAV-- 130

Query: 144 HTSHETKWIDAR-NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
               +T  +  R +SA+L +LY CGLR+SE  SL   ++   +  +R+ GKGDK R+VP+
Sbjct: 131 ----DTSTVKGRRDSAMLEVLYSCGLRVSELTSLRLGDLFFGEGYIRVTGKGDKQRLVPV 186

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
             + R+ I  Y D        +    +F   RG  L   +    +R+     G+    + 
Sbjct: 187 SGAAREKIQRYLD--DRATKTSASDVVFLNNRGTQLTRVMVFTILREAVHRAGIDKHISP 244

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HT RHSFATHLL  G  +R +Q +LGH  + TT+IYT++     GD + +  ++  P
Sbjct: 245 HTFRHSFATHLLEGGASIRQVQEMLGHESILTTEIYTHLE----GDHLRDTVEKYLP 297


>gi|48428759|gb|AAT42408.1| site-specific recombinase XerC [Collimonas fungivorans Ter331]
          Length = 324

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 151/317 (47%), Gaps = 29/317 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L +L  +R LS  T+ +Y  D ++    LA  T+          +++  IR F ++  
Sbjct: 12  GYLDSLAGQRQLSAHTISNYGRDLKE----LASLTQALGDNWQFAAITHFHIRKFAAQLH 67

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV- 138
           ++ +   S+ R LS  + F ++L ++     + +  ++  K++  LP+A+    A+ LV 
Sbjct: 68  SRGLNPSSIARKLSAWRGFFEWLAEQTTLASNPVEGVKAPKRTKPLPKAMAADDAIHLVA 127

Query: 139 -DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT------PQN-----IMDDQS 186
             N L             N A+  LLY  GLR+SE   L       P +     I  D +
Sbjct: 128 SGNPLADAGSSMALC---NQAMFELLYSSGLRVSELAGLDLHYSRQPDHESAGWIDLDAA 184

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEY----YDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
            + + GKG K R VP+     +AI  +      L   D   +    LF   RG  ++P V
Sbjct: 185 EVTVTGKGGKKRSVPVGKPAIQAIAAWLPQRAALLKSDQGEHAA-ALFLTERGTRVSPRV 243

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            Q  ++   + LG+  +   H LRHSFA+H+L   GDLR++Q +LGH  ++ TQ+YT+++
Sbjct: 244 VQLRLKHHAQSLGIASNVHPHVLRHSFASHMLQGSGDLRAVQELLGHASIAATQVYTSLD 303

Query: 303 SKNGGDWMMEIYDQTHP 319
            +     + ++YD  HP
Sbjct: 304 FQR----LAQVYDAAHP 316


>gi|261416671|ref|YP_003250354.1| integrase family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373127|gb|ACX75872.1| integrase family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327068|gb|ADL26269.1| site-specific recombinase, phage integrase family [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 298

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 151/304 (49%), Gaps = 18/304 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           QN+L  L+ +R  S+ T+ +Y     ++L  +     E   ++   +++   ++AF+   
Sbjct: 8   QNFLIYLQTQRRYSERTVITYRKSLEKYLATI----NENAPLEAFSEMN---VKAFVWDL 60

Query: 79  RT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +  QK+   S+   L+ +KSF KYL + KI  ++    +   K+   L   L +K    L
Sbjct: 61  KIKQKLAPTSICEHLAALKSFGKYLVRSKILQKNPAEAVPMPKRPKRLVSFLGQKD---L 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            +               R   +L L+YG GLRISE  SL    +   +  +R+ GKG+K 
Sbjct: 118 AEEKFPELPENPTLPQVRARLLLELIYGSGLRISECQSLCWNQLQIKERLVRVIGKGNKE 177

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLN--LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           RIVP+  ++  + LE +     +      I   +F    GKP +    +  I  L R +G
Sbjct: 178 RIVPITDTL-ISWLEKFRAVEIEAGHTPTITSYVFLSENGKPYDIRTLRNDIHNLLRDIG 236

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRHSFATHLL NG ++ S++ +LGH  +STTQIYT+VN++     + + + 
Sbjct: 237 WEGKASPHVLRHSFATHLLENGAEIMSVKEMLGHSNISTTQIYTHVNAER----LKQAFK 292

Query: 316 QTHP 319
           +THP
Sbjct: 293 KTHP 296


>gi|329905896|ref|ZP_08274277.1| site-specific tyrosine recombinase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547427|gb|EGF32250.1| site-specific tyrosine recombinase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 304

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 145/286 (50%), Gaps = 18/286 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +   L +E GL+K +L++Y  D   F ++LA  ++  +       ++  +I A+ + R 
Sbjct: 17  TFCDTLWLEDGLAKNSLEAYRRDLTAFALWLAQASQTGLL-----AVTGADINAYFAARH 71

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  +  R L+ +K F +   + K  ++   L + + K+    P+ L+E        
Sbjct: 72  DASKAT-TANRRLAVLKRFYQLALRNKQISDDPCLKLHSAKQPPRFPKTLSEANV----- 125

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL     +  +  R+  +L L+Y  GLR++E + L    +  +   +R+ GKG+K R+
Sbjct: 126 EALLAAPDVSTPLGLRDRTMLELMYASGLRVTELVLLKSIELSLNDGVVRVTGKGNKTRL 185

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQ--LRRYLG 255
           VP     R  I E Y L      L+ Q+   LF   RG P+   +F   +++  +R  + 
Sbjct: 186 VPFGEEARSWI-ERYLLEARAQILDGQMDDALFVTARGGPMTRQMFWVVVKKCAVRADIH 244

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            PLS   HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 245 APLSP--HTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHV 288


>gi|307546851|ref|YP_003899330.1| integrase/recombinase XerC [Halomonas elongata DSM 2581]
 gi|307218875|emb|CBV44145.1| K03733 integrase/recombinase XerC [Halomonas elongata DSM 2581]
          Length = 308

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 140/296 (47%), Gaps = 15/296 (5%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P   S  L +E   +L+ L   R  S  T+ +Y  D    L FL     ++  I     L
Sbjct: 4   PLDTSTPLGREADAFLEALS--RTASPATVDAYRRDLAALLDFL-----DRHDIGDPAAL 56

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
               +R F+   R++ +  RSL R  + +  F ++L        + +  +R  +    LP
Sbjct: 57  DAALLRRFLGGERSRGLAPRSLARRRAALSRFAEHLMACGYLDHNPVSLVRTPRVPRDLP 116

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R ++       +D     T H+   +  R+ A+L L Y  GLR++E  +L   +I     
Sbjct: 117 RPVDVDALARFLD-----TPHDGSPLACRDQAMLELFYSSGLRLAELAALDLDDIH--AR 169

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            +R+ GKG K R VP+     +A+ ++  L    L  + +  LF G RG  L     Q+ 
Sbjct: 170 RVRVLGKGGKPRQVPVGRRADQALTDWLSLRGA-LAADGEPALFVGARGNRLGHRAIQQR 228

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +RQL    GL      H LRHSFA+HLL +  DLR++Q +LGH  LSTTQ+YT ++
Sbjct: 229 MRQLALTRGLAEHLHPHRLRHSFASHLLESSQDLRAVQELLGHANLSTTQVYTRLD 284


>gi|27467846|ref|NP_764483.1| xerC protein [Staphylococcus epidermidis ATCC 12228]
 gi|57866718|ref|YP_188400.1| tyrosine recombinase XerC [Staphylococcus epidermidis RP62A]
 gi|282876316|ref|ZP_06285183.1| tyrosine recombinase XerC [Staphylococcus epidermidis SK135]
 gi|34222792|sp|Q7ZAJ4|XERC_STAES RecName: Full=Tyrosine recombinase xerC
 gi|81674902|sp|Q5HPU0|XERC_STAEQ RecName: Full=Tyrosine recombinase xerC
 gi|27315391|gb|AAO04525.1|AE016747_22 xerC protein [Staphylococcus epidermidis ATCC 12228]
 gi|57637376|gb|AAW54164.1| tyrosine recombinase XerC [Staphylococcus epidermidis RP62A]
 gi|281295341|gb|EFA87868.1| tyrosine recombinase XerC [Staphylococcus epidermidis SK135]
 gi|329736214|gb|EGG72486.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU028]
 gi|329736604|gb|EGG72870.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU045]
          Length = 296

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 168/312 (53%), Gaps = 32/312 (10%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K ++ +L  L++ER  S+ TL+SY  D  QF  FL     E + ++T     Y + R ++
Sbjct: 3   KIQETFLYMLKVERNFSEYTLKSYHDDLVQFNNFLE---REHLQLET---FEYKDARNYL 56

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNE 131
           +   + ++   ++ R +S +++F ++     +T +++I+N    + + KK   LP+   E
Sbjct: 57  AFLYSNQLKRTTVSRKISTLRTFYEFW----MTQDNSIINPFVQLVHPKKEKYLPQFFYE 112

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           ++   L   V     H+ K    R+  I+ LLY  G+R+SE +++  ++I  +   +++ 
Sbjct: 113 EEMEALFQTV----EHDNKK-GIRDKVIIELLYATGIRVSELINIKLKDIDMNLPGVKVL 167

Query: 192 GKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQ 249
           GKG+K R +P     R++I  Y +   P  L  +  L +   ++G P+   GV  RY+  
Sbjct: 168 GKGNKERFIPFGEFCRQSIERYLEEFQPKQLANHDYLIV--NMKGDPITERGV--RYVLN 223

Query: 250 --LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
             ++R  G+      H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++   
Sbjct: 224 DVVKRTAGVN-DIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQ-- 280

Query: 308 DWMMEIYDQTHP 319
             + ++Y   HP
Sbjct: 281 --LRKVYLNAHP 290


>gi|83955532|ref|ZP_00964163.1| tyrosine recombinase XerD [Sulfitobacter sp. NAS-14.1]
 gi|83840176|gb|EAP79351.1| tyrosine recombinase XerD [Sulfitobacter sp. NAS-14.1]
          Length = 324

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 143/298 (47%), Gaps = 18/298 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ELL     +L+    E G +  T  +Y  D + F  FLA    + +T+         +I 
Sbjct: 4   ELLHWISTFLEAQAAELGAATNTQLAYGRDLKDFDSFLARRALDFVTV------GRKDIE 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           A++     Q +   +  R LS IK   ++  +    T++  + +    +   LP+ L+E 
Sbjct: 58  AYLVWCDAQGLAKSTRARRLSAIKQLYRFAFEEGWRTDNPAIQIAGPGQDKRLPKVLSED 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L+D    H+   T     RN+ ++ LLY  G+R+SE +SL       D   L I G
Sbjct: 118 EVDQLLDAAR-HSGRNTS-DQLRNTCLMELLYATGMRVSELVSLRVNAARGDPRLLLIMG 175

Query: 193 KGDKIRIVPLLPSVRKAILEYY------DLCPFDLNLNIQLPLF--RGIRGKPLNPGVFQ 244
           KG K R+VPL    R+A+  +       D           + LF  RG  G  L    F 
Sbjct: 176 KGGKERLVPLSDPSREALAAWLVQRDNTDEAAQAKGKPASIYLFPSRGSAGY-LTRHRFY 234

Query: 245 RYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             I++     G+ P   T HTLRH+FATHLL+NG DLR+IQ++LGH  ++TT+IYT+V
Sbjct: 235 LLIKEFALTAGVDPSKVTPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEIYTHV 292


>gi|296129776|ref|YP_003637026.1| tyrosine recombinase XerD [Cellulomonas flavigena DSM 20109]
 gi|296021591|gb|ADG74827.1| tyrosine recombinase XerD [Cellulomonas flavigena DSM 20109]
          Length = 310

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 146/332 (43%), Gaps = 65/332 (19%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFL--------AFYTEEKITIQTIRQLSYTE 70
           + +L +L +ERGL+  TL +Y  D  +++  L        A  TE       +   + ++
Sbjct: 10  EGYLAHLAVERGLAAHTLAAYRRDLTRYVAHLHARGRTEPAEITERDAEDYVLVLRTGSD 69

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
            RA +S          S  RS+  ++ + ++L    +        +R   +   LP+A+ 
Sbjct: 70  GRAVLSPA--------SAARSVVALRGWHRFLALDGLAPTDAAAELRPPAQPRRLPKAIG 121

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTL 188
                 L+D   L        +  R+ A+L L+Y  G RISEA+ L   ++    D+  +
Sbjct: 122 VDDVARLLDAAGLGDGP----VPLRDRALLELVYSTGARISEAVGLDVDDLDLTPDRGAV 177

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-------NPG 241
           R+ GKG K R+VP+     +A+  Y                   +RG+P         P 
Sbjct: 178 RLLGKGGKERVVPVGSYAAQAVDAYL------------------VRGRPALAAAGRGTPA 219

Query: 242 VF--QRYIRQLRRYLGLPLSTTA------------HTLRHSFATHLLSNGGDLRSIQSIL 287
           +F   R  R  R+     L T A            HTLRHSFATHLL+ G D+R +Q +L
Sbjct: 220 IFLNTRGARLSRQSAWAVLRTAAERAGLAADHLSPHTLRHSFATHLLAGGADVRVVQELL 279

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           GH  ++TTQIYT V      D M E+Y  +HP
Sbjct: 280 GHASVATTQIYTLVTP----DTMREVYAASHP 307


>gi|157828362|ref|YP_001494604.1| site-specific tyrosine recombinase XerD [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165933070|ref|YP_001649859.1| site-specific tyrosine recombinase XerD [Rickettsia rickettsii str.
           Iowa]
 gi|157800843|gb|ABV76096.1| tyrosine recombinase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908157|gb|ABY72453.1| integrase/recombinase (XerD/RipX family) [Rickettsia rickettsii
           str. Iowa]
          Length = 306

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 96/298 (32%), Positives = 153/298 (51%), Gaps = 28/298 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L  ER LSK ++ SY+ D   F  +LA +   ++ I T        IR +I    +
Sbjct: 7   FLEMLLAERALSKNSILSYKRDLFDFQNYLAKHKLSELNITT------ENIRDWIEYLAS 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS+ R +S IKS+ ++L     T  + +LN+   K  N LP  L+  Q    + +
Sbjct: 61  NDLQARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIAQ----IKS 116

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-------LRIQGK 193
           +L H S +      R +A+++LLY  GLR+SE +SL   +I+ ++++         + GK
Sbjct: 117 LLEHCSQDNSPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNKTSKGEVRKIFSVLGK 176

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LF--RGIRGKPLNPGVFQRY 246
           G+K R++ +      +I +Y  L   D+ +N   P     LF    + G  +    F   
Sbjct: 177 GNKERVIVINEQAVISIAKY--LAIRDVFVNKAKPRNLIYLFPSSALAGY-MTRQNFAIL 233

Query: 247 IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           ++    Y GL P   + H LRHSFA+HLL  G DLR IQ +LGH  +STTQIYT++ +
Sbjct: 234 LKSAALYAGLNPEYISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQT 291


>gi|146313613|ref|YP_001178687.1| site-specific tyrosine recombinase XerC [Enterobacter sp. 638]
 gi|145320489|gb|ABP62636.1| tyrosine recombinase XerC subunit [Enterobacter sp. 638]
          Length = 300

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/301 (30%), Positives = 150/301 (49%), Gaps = 23/301 (7%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L IER LS +TL +Y+   RQ    +     E+I +++        +RA + + R +
Sbjct: 14  LRYLGIERQLSPITLLNYQ---RQLDAIMQL--AEEIGLKSWPLCDAATVRALVVRSRRK 68

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++       VD+V
Sbjct: 69  GLGPASLALRLSALRSFFDWLVSQGELNANPAKGISTPKAPRHLPKNID-------VDDV 121

Query: 142 --LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL+       +  R+ A+L ++YG GLR+SE ++L  +++  D   + + GKG K R 
Sbjct: 122 NRLLNIDLNDP-LAVRDRAMLEVMYGAGLRLSELVNLDLKHLDLDTGEVWVMGKGSKERR 180

Query: 200 VPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +P+  +    I  + DL   F    N    LF    GK ++    Q+   +     GL  
Sbjct: 181 LPIGRNAVAWIEHWLDLRGLFGAEEN---ALFLSKLGKRISARNVQKRFAEWGIKQGLNS 237

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  +YD  H
Sbjct: 238 HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDSAH 293

Query: 319 P 319
           P
Sbjct: 294 P 294


>gi|114771054|ref|ZP_01448494.1| tyrosine recombinase XerD [alpha proteobacterium HTCC2255]
 gi|114548336|gb|EAU51222.1| tyrosine recombinase XerD [alpha proteobacterium HTCC2255]
          Length = 308

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 157/314 (50%), Gaps = 30/314 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N+L+ +  ER  SK TL +Y+ D   F  FL   ++++I +    + +  +I  +I    
Sbjct: 10  NFLETIHAERNASKNTLLAYKRDLEAFTRFL---SKKRIDLY---KANRKDIENYIISLD 63

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              + + +  R LS IK   +Y     +  ++    ++  K    LP  L+E +      
Sbjct: 64  NHGMSESTRARHLSTIKQIYRYGYDESLIKDNPSNEIKGPKSKRKLPNYLSENEI----- 118

Query: 140 NVLLHTSHE---TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           N LL TS +   +     RN+ ++++LY  G+R+SE +SL   ++  +   L I+GKG K
Sbjct: 119 NKLLDTSTQIGRSPRDKKRNTCLMHVLYATGMRVSELVSLPVISVRGNPEMLLIKGKGGK 178

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGV----------FQR 245
            R+VPL    + AI  Y      D N   ++   +G++  K L P            F  
Sbjct: 179 ERLVPLSTPAKMAIAAYL----VDWNSQQEINKKKGLQESKFLFPSHSKLGHITRVRFYV 234

Query: 246 YIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +I++L    G+ P   + HTLRH+FA+HLL+NG DLR IQ +LGH  ++TT+IYT+V  +
Sbjct: 235 FIKELCIKAGISPNKVSPHTLRHAFASHLLANGADLRVIQMLLGHADVATTEIYTHVLDE 294

Query: 305 NGGDWMMEIYDQTH 318
           N    + E +   H
Sbjct: 295 NIKSLVFEHHPLAH 308


>gi|315633490|ref|ZP_07888780.1| tyrosine recombinase XerC [Aggregatibacter segnis ATCC 33393]
 gi|315477532|gb|EFU68274.1| tyrosine recombinase XerC [Aggregatibacter segnis ATCC 33393]
          Length = 296

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 152/313 (48%), Gaps = 26/313 (8%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E Q +L  L IER +S  TL +Y+    + +  L     +   IQ  +Q++ + +R  ++
Sbjct: 4   ELQKYLTYLRIERQVSPHTLTNYQHQLVRVIAIL-----QDAGIQQWQQVTLSVVRYVLA 58

Query: 77  KRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +   Q  + ++SL   LS ++ FL YL  +     +  + +   K+   LP+ ++  Q  
Sbjct: 59  QSSKQDGLKEKSLALRLSALRRFLSYLVYQGQLKVNPAVGVSAPKQPKHLPKNIDRDQIQ 118

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+ N     S E   ID R+ A++ L Y  GLR+SE   L   +I      +R+ GKG+
Sbjct: 119 LLLAN----DSKEP--IDIRDRAMIELFYSSGLRLSELQGLNLNSINLRVREVRVIGKGN 172

Query: 196 KIRIVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           K RIVPL      AI ++  +     P D        LF    G  ++    Q  + +  
Sbjct: 173 KERIVPLGRYASHAIQQWLKVRLLFNPKDD------ALFVSQLGNRMSTRTIQMRLERWG 226

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              GL      H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++  D   
Sbjct: 227 IRQGLNSHLNPHKLRHSFATHMLEASSDLRAVQELLGHSHLSTTQIYTHLNFQHLAD--- 283

Query: 312 EIYDQTHPSITQK 324
            +YD  HP   +K
Sbjct: 284 -VYDAAHPRAKRK 295


>gi|315655289|ref|ZP_07908190.1| tyrosine recombinase XerD [Mobiluncus curtisii ATCC 51333]
 gi|315490544|gb|EFU80168.1| tyrosine recombinase XerD [Mobiluncus curtisii ATCC 51333]
          Length = 327

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 159/329 (48%), Gaps = 25/329 (7%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL---AFYTEEK 57
           M     P++V  ELL   Q +L  L +ERG S  T+ +Y  D R+++ FL      + ++
Sbjct: 1   MGSRPAPDLVCPELLNP-QPYLDYLAVERGASPHTVAAYTRDLRRYITFLVANGVNSLDE 59

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           +T+  +   +      F        +   S +R+++ ++S+ +Y  +      +    + 
Sbjct: 60  VTLPVLESFARALEAGFGDY---AAVAPSSARRAIASVRSWHRYAYETGAVRANPTKGIA 116

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSL 176
             K    LP  L  ++  TL     L  +  T   +A R+ A+L  LY  G RISEA++L
Sbjct: 117 PAKVGAHLPTVLTVEEVQTL-----LEAASATGDDNALRDRALLEFLYATGARISEAVNL 171

Query: 177 TPQNI-MDDQSTL-RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLF 230
              +I +D++  L R+ GKG K R+  +L  + K  LE Y L      L      Q  +F
Sbjct: 172 AVDDIDLDEEIPLVRLFGKGRKERLS-MLGHLAKDALEAY-LVRVRPRLAEKGRSQGRVF 229

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
               G+PL+       I+ + +   + +    HTLRH FATHLL  G D+R++Q +LGH 
Sbjct: 230 LNTLGRPLSRQSAWAIIQAVAQRAQITVPVGPHTLRHCFATHLLQGGADVRAVQELLGHA 289

Query: 291 RLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            ++TTQIYT V +    D + E+Y   HP
Sbjct: 290 SVTTTQIYTKVTN----DMIREVYASAHP 314


>gi|223044229|ref|ZP_03614266.1| tyrosine recombinase XerC [Staphylococcus capitis SK14]
 gi|222442379|gb|EEE48487.1| tyrosine recombinase XerC [Staphylococcus capitis SK14]
          Length = 296

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 158/306 (51%), Gaps = 24/306 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +L  L++ER  S+ TL+SY  D  QF  FL     E + + T     Y + R ++S 
Sbjct: 5   QKTFLYMLKVERNFSEYTLKSYHDDLIQFNDFLV---SEHLDLAT---FEYKDARNYLSF 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             +  +   ++ R +S +++F +Y   +  +  +  + + + KK   LP+   E++    
Sbjct: 59  LYSHNLKRTTVSRKISTLRTFYEYWMTQDESIVNPFVQLVHPKKEQYLPQFFYEEEM--- 115

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               L  T  +      R+  I+ LLY  G+R+SE +++  ++I  +   +++ GKG+K 
Sbjct: 116 --EALFQTVKQDSKKGIRDRVIIELLYATGIRVSELVNIKIKDIDMNLPGVKVLGKGNKE 173

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQ--LRRY 253
           R +P     +++I  Y D   P   N +  L +   + G P+   GV  RY+    ++R 
Sbjct: 174 RFIPFGEFCKQSIERYLDEFQPRKTNDHEYLIV--NMNGAPITERGV--RYVLNDVVKRT 229

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+      H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++     + ++
Sbjct: 230 AGVT-DIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQ----LRKV 284

Query: 314 YDQTHP 319
           Y   HP
Sbjct: 285 YLNAHP 290


>gi|319441371|ref|ZP_07990527.1| integrase/recombinase [Corynebacterium variabile DSM 44702]
          Length = 313

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 146/322 (45%), Gaps = 31/322 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+ L++ +G S  T+++Y  D R    F    T +  T+   R +    +    +K  
Sbjct: 7   GYLEYLDLVKGRSANTVRAYGADLRA--AFEGVRTLDGFTLDHCRDVLDWAVENGDAKA- 63

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  +L R  S ++ F  +L    +   +    ++  K S +LPR L E Q   +++
Sbjct: 64  -------TLARIASSLRGFGSWLVHTGVLQVNPAAGLQTPKTSRTLPRVLREDQVGGVLE 116

Query: 140 NVLLHTSHETKWIDA-------RNSAILYLLYGCGLRISEALSLTPQNIMDDQS----TL 188
               H   E    D        R+  +L +LY  G+R+SE      +++  +      +L
Sbjct: 117 QARAHAHREPSEGDPGPTPKDIRDWVMLEVLYATGIRVSELAGADVEDLGGNGDPGSRSL 176

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           R+ GKGDK R+VP  P+V  A+ E+       L    +    Q  LF G RG  ++    
Sbjct: 177 RVVGKGDKTRVVPFGPTVEAALHEWLAVRAGMLPASGVTRAAQPALFLGARGGRIDVRQV 236

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +  + +     G+P     H LRHS AT +L  G DLR +Q +LGH  ++TTQIYT+V +
Sbjct: 237 RTVVHRATGGAGVP-EIAPHGLRHSAATAVLDGGADLRVVQQLLGHTSMNTTQIYTHVGT 295

Query: 304 KNGGDWMMEIYDQTHPSITQKD 325
           +     +  +Y + HP    +D
Sbjct: 296 ER----LRVVYKRAHPRSGSQD 313


>gi|256847147|ref|ZP_05552593.1| tyrosine recombinase XerD [Lactobacillus coleohominis 101-4-CHN]
 gi|256715811|gb|EEU30786.1| tyrosine recombinase XerD [Lactobacillus coleohominis 101-4-CHN]
          Length = 296

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 152/315 (48%), Gaps = 34/315 (10%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           ++ Q++ Q L +ERGLS  T+QSY+ D ++   +  F ++   +   I + +   + A +
Sbjct: 3   QDVQDFSQFLLVERGLSNNTIQSYQNDLKKAAEY--FTSQNLSSWGDIDRYAVLNLLAHL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +     +    ++ R +S ++ F +YL ++       +  +   K    LP  L + +  
Sbjct: 61  TNLGQSRT---TIGRQVSSLRQFYQYLLRQHRVMNDPMALVTIPKGQRHLPTVLTQDEV- 116

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
                 +L      K +  R+ AIL ++Y  G+R+SE  +L   ++  D   ++ +GKGD
Sbjct: 117 ----RRMLAVPDTGKKMGIRDRAILEVMYATGMRVSELTNLRLNDLHLDVHLVQPRGKGD 172

Query: 196 KIRIVPL-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           K RI+P+           L SVR   L       F         +F   R K L      
Sbjct: 173 KERIIPIGEVAESWLNRYLHSVRAPQLANKPASDF---------VFLNARAKQLTRQAIW 223

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + I++  +   +    T HT+RHSFATHLL NG DLR +Q +LGH  ++TTQIYT+V+ K
Sbjct: 224 QLIKKTAQAAKIDKDVTPHTMRHSFATHLLENGADLRVVQELLGHSDITTTQIYTHVSQK 283

Query: 305 NGGDWMMEIYDQTHP 319
                ++ +Y  THP
Sbjct: 284 R----LLTVYKNTHP 294


>gi|111017946|ref|YP_700918.1| site-specific tyrosine recombinase XerD [Rhodococcus jostii RHA1]
 gi|110817476|gb|ABG92760.1| tyrosine recombinase [Rhodococcus jostii RHA1]
          Length = 308

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 151/310 (48%), Gaps = 11/310 (3%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE--- 70
           + ++  ++L +L +ERG ++ TL SY  D  ++  FLA    E   I  IR+   ++   
Sbjct: 3   IARQVDSYLDHLAVERGAARNTLGSYRRDLERYTQFLA--DRELTDIDRIREQDVSDFVI 60

Query: 71  -IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R+    R    +   S  R+L  ++ F ++     +T      ++R    +  LP++L
Sbjct: 61  ALRSGDPNRELPPLAASSAARALIAVRGFHRFAAAEGMTAVDVARDVRPPSPAKRLPKSL 120

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              + L L++ V      +      R+ A+L LLY  G RISEA+ L   ++  +  ++ 
Sbjct: 121 PVNEVLALLEAVGGSGPADGPRA-VRDRALLELLYSTGARISEAVGLDVDDVDTETRSVL 179

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           ++GKG K R+VP+     +++  Y       L       LF  +RG  L+     + ++ 
Sbjct: 180 LRGKGGKQRVVPVGRPAVESLDAYLIRGRPALASRGTPALFLNVRGGRLSRQSAWKVLQA 239

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+  + + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V        
Sbjct: 240 AADAAGISSAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVGA---- 295

Query: 310 MMEIYDQTHP 319
           + E++   HP
Sbjct: 296 LREVWAGAHP 305


>gi|116629573|ref|YP_814745.1| integrase [Lactobacillus gasseri ATCC 33323]
 gi|282852048|ref|ZP_06261406.1| tyrosine recombinase XerC [Lactobacillus gasseri 224-1]
 gi|116095155|gb|ABJ60307.1| tyrosine recombinase XerC subunit [Lactobacillus gasseri ATCC
           33323]
 gi|282556808|gb|EFB62412.1| tyrosine recombinase XerC [Lactobacillus gasseri 224-1]
          Length = 307

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 96/319 (30%), Positives = 149/319 (46%), Gaps = 24/319 (7%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECD---TRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +L+K+ Q++L     ER  SK T+ SY  D    +QF        +E        ++   
Sbjct: 7   KLIKQFQDYLN---YERNYSKNTVSSYLNDLDEAKQFF-------KENGGFGGWDKVKSR 56

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++  F+     Q     +  R +S ++SF ++L KR++     +  +        LP+  
Sbjct: 57  DVEIFLQSLAAQNRSRTTQARKMSSLRSFYRFLVKREVLENDPMQTISLRLGEKKLPQFF 116

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            EK+   + D++  H       +  RN A+  L Y  G+R+SE  SL    I  D   + 
Sbjct: 117 YEKEMRQVFDSLAGHDK-----LVVRNRAMFELFYATGMRLSEMASLKLDQIDFDLKIIL 171

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLP-LFRGIRGKPLNPGVFQRYI 247
           + GKG+K R VP       A+ EY D     L   N  L  +F   RG+ L     +  +
Sbjct: 172 VHGKGNKDRYVPFGKDALDALREYRDDVRLALLGQNEDLGYVFLNNRGQKLTGRGIEYIM 231

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +Q+    G+      H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V  K+  
Sbjct: 232 QQVFIKAGVGGKVHPHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKH-- 289

Query: 308 DWMMEIYDQTHPSITQKDK 326
             +   Y +  P   +KD+
Sbjct: 290 --LQADYQKFFPRKDKKDE 306


>gi|332531493|ref|ZP_08407395.1| tyrosine recombinase XerD subunit [Hylemonella gracilis ATCC 19624]
 gi|332039045|gb|EGI75469.1| tyrosine recombinase XerD subunit [Hylemonella gracilis ATCC 19624]
          Length = 322

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 154/313 (49%), Gaps = 26/313 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  L +E GLS+ TL +Y  D   +  +LA   E K + QT+      ++ A+ + R  
Sbjct: 20  FIDALWLEEGLSRNTLAAYRRDLALYARWLAEPREGKAS-QTLDASGEPDLNAYFAARHA 78

Query: 81  QKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           Q     +  R L+  K + ++ +++R+I  +   L + + K+   +P+ L+E Q      
Sbjct: 79  QTRAT-TANRRLTVFKRYFRWAVRERRIQADPT-LRLLSAKQPLRVPKTLSEAQV----- 131

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL        +  R+ A+L L+Y  GLR+SE + L   N+  ++  LR+ GKG K R+
Sbjct: 132 EALLAAPDAATPLGLRDRAMLELMYASGLRVSELVGLKIFNVGLNEHVLRVTGKGSKERL 191

Query: 200 VPL-----------LPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIR-GKPLNPGVFQRY 246
           VP            L   R  +L      P        L +  RG R G+ +   +F   
Sbjct: 192 VPFGEVAADWMRRYLHEARPELLGQVGASPRAAKQTDDLFVTLRGSRAGEAMTRVMFWSL 251

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +++     G+    + HTLRH+FATHLL++G DLR++Q +LGH  +STT IYT+V  +  
Sbjct: 252 VKKYAVIAGVTSPLSPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVARER- 310

Query: 307 GDWMMEIYDQTHP 319
              +  ++ Q HP
Sbjct: 311 ---LKTLHAQHHP 320


>gi|56459934|ref|YP_155215.1| site-specific recombinase [Idiomarina loihiensis L2TR]
 gi|56178944|gb|AAV81666.1| Site-specific recombinase [Idiomarina loihiensis L2TR]
          Length = 300

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 141/297 (47%), Gaps = 15/297 (5%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           ++L +  G S  T  +Y  D R++  +L    +  +    +       ++ ++  RR Q 
Sbjct: 17  EHLWLHHGSSNNTQAAYRSDLRRYCEYLLSLKKSLMDTDEV------VLQDYLLWRRMQG 70

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +  RS  R LS  K F ++  K++         ++  K   S+P +L+E+  ++L++   
Sbjct: 71  LSPRSTSRFLSSTKKFFQFAVKQQWVAVDPTARLKRPKLPQSIPHSLSEEDVISLLEQPD 130

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
             T      I  R+  +L +LY  GLR++E + L    +   Q  +R+ GKG+K R+VPL
Sbjct: 131 TETP-----IGLRDRTMLEVLYATGLRVTELIRLQYDQLSRQQGLVRVIGKGNKERLVPL 185

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
                + +  Y       +       +F   RG  L    F   ++      G+    + 
Sbjct: 186 GEDALEWLDNYLKHGRPAITDKSSPWIFVTQRGSLLTRQAFWYRLKHYAEEAGIYAHLSP 245

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT V  +     +  ++ Q HP
Sbjct: 246 HTLRHAFATHLLNHGADLRVLQLLLGHSDLSTTQIYTQVARER----LQALHAQHHP 298


>gi|296273032|ref|YP_003655663.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
 gi|296097206|gb|ADG93156.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
          Length = 312

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/294 (31%), Positives = 148/294 (50%), Gaps = 16/294 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++  + + E+ L+  TL +Y  D +QF    AF   E ++I  + +     ++ +I   
Sbjct: 8   KDFFFHCQFEKNLNPKTLNAYTIDIKQFK---AFNNIETLSINDVDK---DVLKEYIRHL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTL 137
            +  +  +S+KR L+ +KSF  YL+  +I   S    MR ++K+  SLP+ ++ +    L
Sbjct: 62  YSIDLKPKSIKRKLATLKSFFNYLEFEEIILVSPFRKMRISIKEQKSLPKTIDIRNIRKL 121

Query: 138 VDNV--LLHTSHETKWID----ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
              V  +   + ET+        R+ AIL LL+  GLR+SE  ++   NI      +RI 
Sbjct: 122 FKYVYKIKSNNKETESFSYKTIVRDIAILELLFATGLRVSEVSNMKYSNIDLSSGNIRIL 181

Query: 192 GKGDKIRIVPLLPSVRKAIL-EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           GKG+K R + +     K IL EY+ L   ++  N     F    G  L+       I++ 
Sbjct: 182 GKGNKERTIQICDQEVKLILKEYFSLFKDEIYKN--KCFFINRLGNKLSEQSISNMIKKY 239

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           ++   +    T H  RHSFAT LL  G D+R IQ +LGH  +STTQIYT +N K
Sbjct: 240 QKNANVGQHLTPHMFRHSFATMLLEEGVDIRYIQGMLGHSSISTTQIYTQINMK 293


>gi|104784270|ref|YP_610768.1| site-specific tyrosine recombinase XerC [Pseudomonas entomophila
           L48]
 gi|123380751|sp|Q1I301|XERC_PSEE4 RecName: Full=Tyrosine recombinase xerC
 gi|95113257|emb|CAK17985.1| site-specific tyrosine recombinase, integrase family [Pseudomonas
           entomophila L48]
          Length = 299

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 152/313 (48%), Gaps = 35/313 (11%)

Query: 17  ERQ--NWLQNLEIERGLSKLTLQSYECDTRQFLIFL---AFYTEEKITIQTIRQLSYTEI 71
           ERQ   +  +L  ER +S  TL +Y  D  + + F         + + +Q +RQL     
Sbjct: 2   ERQLEAYCAHLRNERQVSGHTLLAYRRDLEKVIEFCNNQGIAGWDALQVQQLRQL----- 56

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
              ++++       RSL R LS ++   +YL +  +        +   K    LP+ L+ 
Sbjct: 57  ---VARQHHHGQSSRSLARLLSAVRGLYRYLNREGLCQHDPANGLAPPKGERRLPKTLDT 113

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            +AL L+D  +     +  +I  R+ AIL L Y  GLR+SE   L  +++      +++ 
Sbjct: 114 DRALQLLDGGV-----DDDFIARRDQAILELFYSSGLRLSELAGLDLEHLDLTGGLVQVL 168

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           GKG K R++P+     +A+ E++ L     P D        +F   +G  L+    Q  +
Sbjct: 169 GKGGKSRVLPVGRKACEALQEWFRLRGIAAPRDG------AVFITRQGNRLSTRAIQMRV 222

Query: 248 RQL-RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +    R LG  L    H LRHSFA+HLL +  DLR++Q +LGH  +STTQIYT+++ ++ 
Sbjct: 223 KTFGERELGQHLHP--HMLRHSFASHLLESSQDLRAVQEMLGHADISTTQIYTHLDFQH- 279

Query: 307 GDWMMEIYDQTHP 319
              +  +YD  HP
Sbjct: 280 ---LAAVYDSAHP 289


>gi|308051404|ref|YP_003914970.1| tyrosine recombinase XerC [Ferrimonas balearica DSM 9799]
 gi|307633594|gb|ADN77896.1| tyrosine recombinase XerC [Ferrimonas balearica DSM 9799]
          Length = 296

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 150/301 (49%), Gaps = 17/301 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           LE ER  S  T+++Y  +  + L  L     +   +   + L     +A ++K   Q + 
Sbjct: 12  LENERQYSAYTVRNYLKELERALPLL-----QAQGLTDWQGLRTQHCQALLAKLHRQGLS 66

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            RSL  +LS ++  +K+L +    T   ++ ++  K+   LP+ L+  Q      N LL 
Sbjct: 67  PRSLSLTLSALRQLIKFLLREGTLTHDPMVGVQAPKQGRPLPKNLDVDQV-----NRLLE 121

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSL-TPQNIMDDQSTLRIQGKGDKIRIVPLL 203
            + +   +  R+ A++ L Y  GLR++E ++L  PQ  + D+  +R+ GKG K RI+P+ 
Sbjct: 122 LNDDDPLV-IRDRAMMELFYSSGLRLAELVALDCPQLSLTDRE-VRVMGKGGKERILPVG 179

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
               + + +Y  L P  L       LF   RG  ++    Q  + +  +   L      H
Sbjct: 180 NKASEWLAKYLALRPALLKGKECAALFLSNRGSRISRRSVQARLTEWGQSQALDSKVHPH 239

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            LRHSFATHLL    DLR++Q +LGH  LSTTQIYT+++ ++    +  +YD  HP   +
Sbjct: 240 KLRHSFATHLLEASKDLRAVQELLGHANLSTTQIYTHLDFQH----LASVYDTAHPRAKK 295

Query: 324 K 324
           K
Sbjct: 296 K 296


>gi|38234089|ref|NP_939856.1| site-specific tyrosine recombinase XerC [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200351|emb|CAE50037.1| Putative integrase/recombinase [Corynebacterium diphtheriae]
          Length = 302

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 147/305 (48%), Gaps = 24/305 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++ + L++  G S  T++SY+ D   F+   A          T+ Q +   +R ++++  
Sbjct: 11  DFCEYLDLGLGRSPATVRSYKSDLFGFVNRFA----------TLDQFTLDNVREWLAQAV 60

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  ++ R  + IK+F  +L +           +   K   +LP  ++E+     + 
Sbjct: 61  ADGKSRATIARRTASIKAFSGWLLRNGYNDIDVAARLVAPKVQRTLPMVVSERT----MT 116

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           N++   +  T+    R+ AI  LLY  G+R+SE   L   ++   + T R+ GKG+K R+
Sbjct: 117 NIVEKPASTTEDTFVRDRAICELLYASGIRVSELCGLNTGDVDLKRQTARVTGKGNKQRV 176

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           VP       A+  + +    ++ ++         LF G+RGK ++P   +R +    +  
Sbjct: 177 VPFGDQATAALSHWLNGVRSEMLISAGCTSGVDALFVGVRGKRIDPRQVRRIVETSGQEH 236

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+      H LRH+ ATHLL NG DLR +Q +LGH  L+TTQIYT+V+++     + E Y
Sbjct: 237 GIG-GLAPHALRHTAATHLLDNGADLRVVQEMLGHSSLNTTQIYTHVSTQR----LKEAY 291

Query: 315 DQTHP 319
              HP
Sbjct: 292 KNAHP 296


>gi|325280617|ref|YP_004253159.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712]
 gi|324312426|gb|ADY32979.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712]
          Length = 307

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 162/314 (51%), Gaps = 30/314 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLA----FYTEEKITIQTIRQLSYT------ 69
           ++L+N+   +  S LT+ +Y+ D  QF  F         +E+IT + +R+          
Sbjct: 8   SYLKNI---KRYSALTITAYKEDLNQFREFCEKVELIRQDEEITSKMVRRFEMGLMSGGL 64

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +I     + + + +  RS++R LS ++++ +YL +    TE     +   K    LP  +
Sbjct: 65  KIGGVDGEEKLRPMTARSVRRKLSSLRTYFRYLVREGKLTEDPTEIVVAPKMGKRLPVFV 124

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            + Q    +D VL   + +  + + R+  +L   Y  G+R SE ++L  +++  + + +R
Sbjct: 125 PDYQ----MDEVLDKHASDKDFANIRDRMVLMTAYYTGMRRSELVALKLEDVDLEGAVIR 180

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKGDK RIVP+LP +   +  Y +     +    Q  +F   +GKP    V+ ++I +
Sbjct: 181 VNGKGDKQRIVPMLPELAGDLRIYLNKREELVGEKHQF-VFVTDKGKP----VYDKFIYR 235

Query: 250 LR-RYLGLPLS---TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           L  +YLG   S    + H LRHSFAT LL+NG  + +I+ +LGH  L+ TQIYT+    N
Sbjct: 236 LAVKYLGEVTSLKKRSPHVLRHSFATALLNNGACIEAIRELLGHAGLAATQIYTH----N 291

Query: 306 GGDWMMEIYDQTHP 319
             + + ++Y+Q HP
Sbjct: 292 SFESLKKVYNQAHP 305


>gi|229494828|ref|ZP_04388582.1| tyrosine recombinase XerD [Rhodococcus erythropolis SK121]
 gi|229318266|gb|EEN84133.1| tyrosine recombinase XerD [Rhodococcus erythropolis SK121]
          Length = 307

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 148/316 (46%), Gaps = 23/316 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L ++  ++L +L +ERG ++ TL SY  D  ++  +L         I  +  ++  ++  
Sbjct: 2   LARQVDSYLDHLAVERGSARNTLLSYRRDLNRYAEYL-----NGRGIDDVAGVTENDVTE 56

Query: 74  FISKRRTQKIGDR----------SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           F++  R   +GD+          S  R+L  ++ F K+     + +      ++      
Sbjct: 57  FVTHLR---LGDKDAGVVPLAASSAARTLIAVRGFHKFSAAEGLVSVDVARTVKPPTPGR 113

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            LP+AL     + L+D      + +    D R+ A+L LLY  G RI+EA+ L   +I  
Sbjct: 114 KLPKALPLDDVIALLDASGGGAAGDGPR-DLRDRALLELLYSTGARITEAIDLDVDDIDT 172

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           +  ++ ++GKG K RIVP+      A+  Y       L       LF   RG  L+    
Sbjct: 173 ETRSVLLKGKGGKQRIVPVGRPAIAAVDAYLVRGRPSLATRGVPALFLNARGGRLSRQSA 232

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            + ++      G+    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V  
Sbjct: 233 WQILQDAAASAGIKADVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTV 292

Query: 304 KNGGDWMMEIYDQTHP 319
                 M E++ Q HP
Sbjct: 293 TA----MREVWAQAHP 304


>gi|108799908|ref|YP_640105.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. MCS]
 gi|119869018|ref|YP_938970.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. KMS]
 gi|108770327|gb|ABG09049.1| tyrosine recombinase XerD subunit [Mycobacterium sp. MCS]
 gi|119695107|gb|ABL92180.1| tyrosine recombinase XerD subunit [Mycobacterium sp. KMS]
          Length = 318

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 155/326 (47%), Gaps = 26/326 (7%)

Query: 7   PEIVSFELLKER-QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT---IQT 62
           P  V    L ++ Q +L +L IERG++  TL SY  D R++         E +T   ++ 
Sbjct: 3   PSAVRRSALDDQLQGYLDHLTIERGVAANTLSSYRRDLRRY--------SEHLTGRGVED 54

Query: 63  IRQLSYTEIRAF-ISKRR------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           + +++ +++  F ++ RR       Q +   S  R+L  ++   ++     +T       
Sbjct: 55  LAKVTESDVSDFLVALRRGDPDTGAQALSAVSAARALIAVRGLHRFATAEGLTDVDVARA 114

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           ++       LP++L+  + L L+D      S     +  RN A+L LLY  G RISEA+ 
Sbjct: 115 VKPPTPGRRLPKSLSIDEVLALLDGAG-GDSEADGPLTLRNRALLELLYSTGARISEAVG 173

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGI 233
           L   ++     ++ ++GKG K R+VP+      A+  Y      DL    +    +F   
Sbjct: 174 LDIDDVDTHARSVLLRGKGGKQRLVPIGRPAVSALDAYLVRGRPDLARRGRGTPAIFLNA 233

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           RG  L+     + ++      G+  + + HTLRHSFATHLL  G D+R +Q +LGH  ++
Sbjct: 234 RGGRLSRQSAWQVLQDAAERAGITSAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVT 293

Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHP 319
           TTQIYT V        + E++   HP
Sbjct: 294 TTQIYTMVTVHA----LREVWAGAHP 315


>gi|295095176|emb|CBK84266.1| tyrosine recombinase XerC subunit [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 300

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 148/299 (49%), Gaps = 19/299 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L +ER LS +TL +Y+   RQ    +    E  I +++ +Q     +R F+ + R +
Sbjct: 14  LRYLGVERQLSPITLLNYQ---RQLDAIMQIADE--IGLKSWQQCDAATVRGFVVRSRKK 68

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +   SL   LS ++SF  +L  +     +    +   K    LP+ ++      L+D  
Sbjct: 69  NLSPASLALRLSALRSFFDWLVSQGGLKANPAKGIATPKAPRHLPKNIDVDDVNRLLDID 128

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           L         +  R+ A+L ++YG GLR+SE ++L  +++  +   + + GKG K R +P
Sbjct: 129 L------NDPLAVRDRAMLEVMYGAGLRLSELVNLDLKHLDLESGEVWVMGKGSKERRLP 182

Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +  +    I  + DL   F  + +    LF    GK ++    Q+   +     GL    
Sbjct: 183 IGRNAVSWIEHWLDLRGLFGADED---ALFLSKLGKRISARNVQKRFAEWGIKQGLNSHV 239

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
             H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  +YD  HP
Sbjct: 240 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 294


>gi|237654487|ref|YP_002890801.1| tyrosine recombinase XerC [Thauera sp. MZ1T]
 gi|237625734|gb|ACR02424.1| tyrosine recombinase XerC [Thauera sp. MZ1T]
          Length = 304

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 146/307 (47%), Gaps = 21/307 (6%)

Query: 15  LKER-QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L ER Q WL  L  +R +S LTL +Y    +  L     +  E         L   +IR 
Sbjct: 13  LPERMQAWLAWLATQRRVSPLTLTAYRAGLQALLRLAEEHPPES--------LQPADIRR 64

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+++   +    RS+ R LS  + F ++L +      +  L +R  K  ++LPR L+ +Q
Sbjct: 65  FVARLHGEGQQGRSIARHLSAWRGFYRWLVREHGVRINPALGIRPPKSPSTLPRVLSPEQ 124

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQG 192
           A  L+D            ++ R+ A+  L Y  GLR++E   L   + +D  +  + + G
Sbjct: 125 ANALLD------PEPQNLLEIRDIAMFELFYSSGLRVAELAGLDIDSGLDLAEGLVTVTG 178

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K  + R VP+      A+  + ++    L    +  LF    G  L+       +    +
Sbjct: 179 KRQRQRTVPVGGKAIAALRPWLEIR-AGLAAAGERALFVTRDGHRLSTRGIASRLGTRAQ 237

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            LGL +    H LRHSFA+HLL + GDLR++Q +LGH  + +TQIYT+++ ++    +  
Sbjct: 238 ALGLGVHVHPHMLRHSFASHLLQSSGDLRAVQELLGHASIRSTQIYTHLDFQH----LAA 293

Query: 313 IYDQTHP 319
           +YD  HP
Sbjct: 294 VYDAAHP 300


>gi|291536378|emb|CBL09490.1| tyrosine recombinase XerD subunit [Roseburia intestinalis M50/1]
 gi|291538752|emb|CBL11863.1| tyrosine recombinase XerD subunit [Roseburia intestinalis XB6B4]
          Length = 294

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 148/301 (49%), Gaps = 16/301 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++++ +  E+  SK T  SYE D R+   +L     E   +  +  ++ T + A++    
Sbjct: 7   DFIEYIHNEKQTSKNTEVSYERDLRKMNEYL-----EAQNVYGVSAVTETNLNAYVMFLE 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +     ++ RS++ +K+F  +L+K +         ++  K   ++PR L  ++   L++
Sbjct: 62  REGRKPATVSRSIASMKAFFHFLEKERRIESDPAWRLKAPKIEKTMPRILTTEEVTLLLE 121

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
               +T  E      R+ A+L LLY  G+R+SE +SL   + ++ Q    I     K RI
Sbjct: 122 QPSGNTPKEL-----RDKAMLELLYATGIRVSELISLKVSD-LNLQMEYVICTDIHKERI 175

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +P     R+A+  Y       L      P LF    G  ++   F + I+   +  G+  
Sbjct: 176 IPFGNVAREALTRYMQDGRDHLISQADCPWLFTNCTGGAMSRQGFWKLIKFYGKKAGIES 235

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             T HTLRHSFA HL+SNG DL+S+Q +LGH  +STTQIY    S+ G   + E+Y + H
Sbjct: 236 EITPHTLRHSFAAHLISNGADLKSVQEMLGHSDISTTQIY----SQMGQGRIREVYLKAH 291

Query: 319 P 319
           P
Sbjct: 292 P 292


>gi|255068446|ref|ZP_05320301.1| tyrosine recombinase XerC [Neisseria sicca ATCC 29256]
 gi|255047288|gb|EET42752.1| tyrosine recombinase XerC [Neisseria sicca ATCC 29256]
          Length = 303

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 147/299 (49%), Gaps = 17/299 (5%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           ++G S  TL +Y  D  + +  L      K + +T + L   +  A + +   Q + +R+
Sbjct: 19  QQGKSAHTLSAYGRDLTELVRLLT-----KGSSETAQDLKRRDFVAALKRLSQQGLSERT 73

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           L R LS  + +  +L +  +       N++  +    LP+AL +++   ++D+     S 
Sbjct: 74  LARKLSAWRQYCGWLVQSGMMDNDPTFNLKASRLPERLPKALPQEELNHMLDSAPADDS- 132

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
               +  R+ A+  L+YG GLR+SE   L   +++ D+  + + GKG K R +PL     
Sbjct: 133 ----LAVRDHALFELMYGSGLRLSEIHGLDLGDVLLDEGWVSVTGKGRKERQIPLSGKSV 188

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A+  Y       +  + +  LF G  G  L     Q+ ++      G     + H +RH
Sbjct: 189 EALRAY---LSERVAADGETALFTGKNGTRLGQRQIQKRLQAWAVQQGSGQHISPHMMRH 245

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
           S+A+HLL +  D+R++Q +LGH  LSTTQIYT ++     D + ++YD+ HP   +K +
Sbjct: 246 SYASHLLQSSRDIRAVQELLGHSNLSTTQIYTKLDF----DHLAKVYDEGHPRAKRKSE 300


>gi|237809853|ref|YP_002894293.1| tyrosine recombinase XerC [Tolumonas auensis DSM 9187]
 gi|237502114|gb|ACQ94707.1| tyrosine recombinase XerC [Tolumonas auensis DSM 9187]
          Length = 309

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 97/314 (30%), Positives = 157/314 (50%), Gaps = 24/314 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
             +L+ L +ER LS  TL +Y+   R     + +  E++I  Q   +L+   +R +    
Sbjct: 10  HTYLEYLRVERQLSAHTLSNYQ---RHLQALIEWLQEKQI--QDWGELNNPLVRQWAHTL 64

Query: 79  RTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  K    R++   +S ++SF  +L  R I   +    +   K    LP+ L+       
Sbjct: 65  RKHKDTSPRTISTKMSALRSFADWLVIRGILAANPARGVALPKLGRPLPKNLD------- 117

Query: 138 VDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           VD V  LL+ + E+  +  R+ AI+ L Y  G+R+SE ++L   ++      +R+ GKG+
Sbjct: 118 VDQVHQLLNITDESDPLVVRDRAIMELFYSTGMRLSELVALDLNDLDMTSRQVRVIGKGN 177

Query: 196 KIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K RI   LP  R A+  LE +        L  +  LF   R + +   + +  I Q  + 
Sbjct: 178 KERI---LPVGRLALEWLEKWLRTRTAFLLEGETALFLSSRKRRITARMVEIRIEQWGQK 234

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRHSFATH+L + GDLR++Q +LGH  L+TTQIYT+++ ++    +  +
Sbjct: 235 QTLNSHVHPHKLRHSFATHMLESSGDLRAVQELLGHANLATTQIYTHLDFQH----LAAV 290

Query: 314 YDQTHPSITQKDKK 327
           YDQTHP   +K  K
Sbjct: 291 YDQTHPRSKRKKLK 304


>gi|290513161|ref|ZP_06552523.1| tyrosine recombinase XerC [Klebsiella sp. 1_1_55]
 gi|289774372|gb|EFD82378.1| tyrosine recombinase XerC [Klebsiella sp. 1_1_55]
          Length = 300

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 152/301 (50%), Gaps = 23/301 (7%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQF--LIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           L+ L +ER LS +TL +Y+   RQ   LI LA    ++  +++ +Q    ++R+F  + R
Sbjct: 14  LRYLGVERQLSPITLTNYQ---RQLDALIVLA----DEAGLKSWQQCDAAQVRSFAVRSR 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +G  SL   LS ++SF  ++  +     +    +   K    LP+ ++      L+D
Sbjct: 67  RAGLGPASLALRLSALRSFFDWMVSQGELAANPAKGIAAPKIPRHLPKNIDVDDVNRLLD 126

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             L         +  R+ A+L ++YG GLR+SE ++L  +++  +   + + GKG K R 
Sbjct: 127 IDL------NDPLAVRDRAMLEVMYGAGLRLSELVNLDIKHLDLESGEVWVMGKGSKERR 180

Query: 200 VPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +P+  +    I  + DL   F  + +    LF    GK ++    Q+   +     GL  
Sbjct: 181 LPIGRNAVAWIEHWLDLRGLFGTDDD---ALFLSKLGKRISARNVQKRFAEWGIKQGLNS 237

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  +YD  H
Sbjct: 238 HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAH 293

Query: 319 P 319
           P
Sbjct: 294 P 294


>gi|91201862|emb|CAJ74922.1| similar to site-specific recombinase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 295

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 152/303 (50%), Gaps = 19/303 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI--SK 77
           +++  L +E G +  T+  Y+ D + F+ FL        +  TIR      I +FI   K
Sbjct: 7   SFINYLLVECGSAMNTIHGYQSDLQLFIKFLLGKNIHDFS--TIRP---NIITSFIISEK 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R Q +   S+ R++  I+ F K+L       ++ ++++ + K    LP  +     +  
Sbjct: 62  HRGQSVN--SINRAIVSIRMFYKFLILEGKLQKNPLVSLDSPKLWKKLPYVV----PIHK 115

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++++L     +TK +  RN AIL LLY  G R+SE  +++   I  +   ++ +GKG K 
Sbjct: 116 IEDLLSAADVKTK-LGIRNKAILELLYATGARVSEVATISLNGINLEYGYIKCKGKGSKE 174

Query: 198 RIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVPL      AI EY     P   +      LF    G+PL        ++      G+
Sbjct: 175 RIVPLGKKASIAIQEYLTTVRPQIKDSQNSHYLFLSRTGRPLRRENIWLIVKNCALKAGI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + H LRHSFATHLL NG DLR++Q +LGH  +STTQIYT+VN ++    +  I+ +
Sbjct: 235 TEAISPHKLRHSFATHLLENGADLRAVQEMLGHVSISTTQIYTHVNKQH----LKAIHQK 290

Query: 317 THP 319
            HP
Sbjct: 291 FHP 293


>gi|91786958|ref|YP_547910.1| phage integrase [Polaromonas sp. JS666]
 gi|91696183|gb|ABE43012.1| phage integrase [Polaromonas sp. JS666]
          Length = 358

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 150/317 (47%), Gaps = 25/317 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+++ +E+ L+  T++ Y  D  +           +     + ++  T +R ++++ 
Sbjct: 27  ERYLEHVRVEKRLASRTVELYALDLHKL------EANARQAGVALTEVHSTHMRRWVAQM 80

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  R +   LSG + F  +L +  +   + + ++R+ K +  LP+AL+  +A+ L 
Sbjct: 81  HGAGRSGRGIALILSGWRGFYAWLGREGLVPANPVQDVRSPKVAKPLPKALSVDEAVQLA 140

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT------PQNIMD-DQSTLRIQ 191
                    +   ++AR+  I  LLYGCGLRI E + L        +  +D D +   + 
Sbjct: 141 S--YQSDDEDDPHLEARDQCITELLYGCGLRIGELVGLDVRASAQARGWVDMDAAEAHVL 198

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDL------CPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
           GKG K R VP+     +A+  +  L                  LF   RG  L P   + 
Sbjct: 199 GKGSKRRSVPVGRQALQALHAWLALRGDWAGEGAAAEGAAGQALFISQRGARLTPQHIRL 258

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +++     GL      H LRHSFA+H+L + GDLR++Q +LGH  ++TTQ+YT ++ ++
Sbjct: 259 RLKRRSLKAGLATPVHPHMLRHSFASHVLQSSGDLRAVQELLGHANITTTQVYTRLDFQH 318

Query: 306 GGDWMMEIYDQTHPSIT 322
               + ++YD  HP  T
Sbjct: 319 ----LAKVYDAAHPRAT 331


>gi|160915175|ref|ZP_02077388.1| hypothetical protein EUBDOL_01183 [Eubacterium dolichum DSM 3991]
 gi|158432974|gb|EDP11263.1| hypothetical protein EUBDOL_01183 [Eubacterium dolichum DSM 3991]
          Length = 302

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 143/292 (48%), Gaps = 16/292 (5%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKI-TIQTIRQLSYTEIRAFISKRRTQK---IGDRS 87
           S+ T  +Y+ D ++F++++    E+ I + + + ++      AF+  +  +    + + +
Sbjct: 19  SEHTKAAYQRDIQEFIMYI---REQAIDSFEDVDRIVVMNYIAFLRDKGGKGYSGMKNTT 75

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           + R LS ++SF  YL +      +  +  +  K +  +P  L   +    +++  L++  
Sbjct: 76  IARKLSSLRSFYHYLNEYIGIANNPFVYFKTPKIAKRIPEFLFYDEIEIFLESFDLNSMQ 135

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
                  R+  +  L+Y CGLR+SEA+SL  +++    + L I GKGDK R+VP     +
Sbjct: 136 -----GLRDRTMFELMYACGLRVSEAVSLRTRDVDFADNILHIHGKGDKERLVPFYDLAK 190

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + ++ Y          + +  LF   RGK L     Q  + +      L +    H  RH
Sbjct: 191 ELLVSYIKDVRDVWATSDETALFVNQRGKKLTTRGVQYLMNKAVEKCDLHVHVHPHMFRH 250

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           SFATHLL NG DLR +Q +LGH  LSTTQIY +V+ +     +   Y+  HP
Sbjct: 251 SFATHLLDNGADLRYVQELLGHSSLSTTQIYVHVSKER----LKAAYEHAHP 298


>gi|227513451|ref|ZP_03943500.1| site-specific recombinase XerD [Lactobacillus buchneri ATCC 11577]
 gi|227524593|ref|ZP_03954642.1| site-specific recombinase XerD [Lactobacillus hilgardii ATCC 8290]
 gi|227083324|gb|EEI18636.1| site-specific recombinase XerD [Lactobacillus buchneri ATCC 11577]
 gi|227088268|gb|EEI23580.1| site-specific recombinase XerD [Lactobacillus hilgardii ATCC 8290]
          Length = 331

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 157/318 (49%), Gaps = 23/318 (7%)

Query: 15  LKERQN---WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           + +R+N   +L+ L  ER  S+ T+Q+Y+ D  +FL FL   +++  ++  I      ++
Sbjct: 22  MDDRKNMDWFLKYLRSERHYSEDTVQAYQNDLTEFLKFLNETSKDHTSLIKIDSF---DV 78

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRAL- 129
            ++++    +K    S+ + +S ++SF  +L K ++  ++N     +LK  N  LPR   
Sbjct: 79  ESYLTGLYDKKYARNSIAQKVSALRSFYGFLIKNEVI-KNNPFEYVHLKNQNRRLPRFFY 137

Query: 130 -NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
             E QAL              + +  RNSAIL + Y  G+R+SE +++  ++I  +   +
Sbjct: 138 PTEMQAL------FSAAKKGERKLAFRNSAILEVFYSTGIRVSEGVTIQLKDIDLENQLI 191

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQR 245
            + GKG K R VP     ++A+  Y       L          LF    GKPL     + 
Sbjct: 192 LVTGKGRKQRYVPFGEPAKRAVESYLKESREPLMTKYHQKHDYLFVNHFGKPLTSRGIEY 251

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +  + +   L  +   H LRH+FAT +L+NG D+RS+Q +LGH  LSTTQIYT+V   +
Sbjct: 252 ILNGIIKQSSLTTNIHPHMLRHTFATEMLNNGADMRSVQELLGHSSLSTTQIYTHVTKSH 311

Query: 306 GGDWMMEIYDQTHPSITQ 323
               +M  Y +  P   Q
Sbjct: 312 ----LMNDYQKYFPRNNQ 325


>gi|312892234|ref|ZP_07751731.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311295364|gb|EFQ72536.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 322

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 160/317 (50%), Gaps = 28/317 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-----------KITIQTIRQLS 67
           + ++Q L  E+  S  T+ +Y+ D  QF  + A   +            K+ +  I  ++
Sbjct: 16  ERFIQYLRYEKRFSSHTITAYQTDLYQFFTYTANSADHNLSPAEAELKVKLALSHIADIT 75

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
           Y +IR +I +        +S+ R +S +++F K+  +  I T +    ++  K    LP 
Sbjct: 76  YQDIREWIVQLMNDDQAAKSINRKISCLRTFFKFALREGIITANPASKIQAPKIPKRLPV 135

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            + E + ++L+ +  +    +  +   R+  ++ LL+G G+R++E + L   +I   + T
Sbjct: 136 VVEEDKIVSLLSSSQIF---DDSFTGLRDKLVIELLFGTGIRLAELVGLKETDIDIYEGT 192

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           +++ GK +K R++P+   ++  ++ Y ++   +   N  L L    +G       + + +
Sbjct: 193 IKVLGKRNKERVIPIHSELKLLLVHYINIKKSENFNNNSLTLIVTSKG----ANAYSKMV 248

Query: 248 RQL-RRYLGLPLST----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             + ++YL L +ST    + H LRHSFAT LL++G DL +I+ +LGH  LS TQIYT+  
Sbjct: 249 YLIVQKYLSL-ISTQDKKSPHVLRHSFATSLLNHGADLNAIKELLGHANLSATQIYTH-- 305

Query: 303 SKNGGDWMMEIYDQTHP 319
             N  + +  IY Q HP
Sbjct: 306 --NSVERLKSIYKQAHP 320


>gi|261393207|emb|CAX50826.1| tyrosine recombinase XerC [Neisseria meningitidis 8013]
          Length = 305

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 149/308 (48%), Gaps = 17/308 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI--TIQTIRQLSYTEIRAFISKR 78
           +L+N+ +  G S+ T+ +Y  D  +    LA    E      Q + Q  +T     +S+R
Sbjct: 13  YLENI-VREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQGLSQRDFTAALRRLSQR 71

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +  R+L R LS  + +  +L +R +       +++  K+   +P+AL ++    ++
Sbjct: 72  ---GLNARTLARKLSSWRQYCVWLVERGLMRADPTADIKPPKQPERVPKALPQEWLNRML 128

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D  +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GKG K R
Sbjct: 129 DLPVDGGDP----LAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQR 184

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            VPL+    +A+  Y    P     +    LF G  G  L+    Q+ + Q     G   
Sbjct: 185 QVPLVGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGR 241

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +YD+ H
Sbjct: 242 HVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAH 297

Query: 319 PSITQKDK 326
           P   ++D+
Sbjct: 298 PRAKRQDE 305


>gi|261250028|ref|ZP_05942605.1| tyrosine recombinase XerC [Vibrio orientalis CIP 102891]
 gi|260939532|gb|EEX95517.1| tyrosine recombinase XerC [Vibrio orientalis CIP 102891]
          Length = 310

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 153/300 (51%), Gaps = 16/300 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  E+GLS  T ++Y+         LA     ++ ++  +Q+    +R   SK   + + 
Sbjct: 23  LRSEKGLSLHTQRNYKQQLETMAGHLA-----QLGLKEWQQVDAGWVRQLASKGMREGMK 77

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             SL   LS ++SF  ++  R   + +    +   +K   LP+ L+  +   L++     
Sbjct: 78  PSSLATRLSSLRSFFDFMMLRGEMSANPAKGVSAPRKKRPLPKNLDVDEIGQLLE----- 132

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
             +E   +  R+ A++ L+YG GLR++E +S+  +++      +R+ GKGDK R VP   
Sbjct: 133 -VNEDDPLAIRDRAMMELMYGAGLRLAELVSINVKDVGLSSGEIRVVGKGDKERKVPFTG 191

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
              + + ++  + P   N + +L LF    G  ++    Q+ + +  +   +    + H 
Sbjct: 192 MAAEWVSKWLRVRPSLANSD-ELGLFVSKLGVRISHRNVQKRMAEWGQKQAVASHISPHK 250

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ ++    + E+YDQ HP   +K
Sbjct: 251 LRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQH----LAEVYDQAHPRAKKK 306


>gi|300721450|ref|YP_003710725.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC
           19061]
 gi|297627942|emb|CBJ88488.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC
           19061]
          Length = 304

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 153/306 (50%), Gaps = 16/306 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL   + +L+ L +ER LS LT+  Y    R  L  LA  +  KI I   + L    +R 
Sbjct: 8   LLAPVEAFLRYLRVERRLSPLTITHY----RHHLTVLAEISL-KIGISEWQALDPVNVRL 62

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+S+ R   +   S+   LS ++SFL ++  +     +    +   +K   LP+ ++  +
Sbjct: 63  FVSRSRRAGLESASIALRLSALRSFLDWMVMQGKLAANPAKMVSAPRKKRHLPKNMDVDE 122

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+ N+ L+       +  R+  +L ++YG GLR+SE + L  +++  D   + ++GK
Sbjct: 123 VNQLL-NINLNDP-----LSVRDRTMLEVMYGAGLRLSELVGLNWRDVDLDSGDVWVRGK 176

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R VP     ++ +  + ++       N  +       GK ++    Q+   Q    
Sbjct: 177 GSKERKVPFGRMAQEWLQRWLEMRELFEPENDAV-FISSKSGKRISARNVQKRFEQWGIR 235

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+      H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++    + ++
Sbjct: 236 QGVNSHINPHKLRHSFATHILESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LTKV 291

Query: 314 YDQTHP 319
           YD  HP
Sbjct: 292 YDVAHP 297


>gi|13473085|ref|NP_104652.1| site-specific tyrosine recombinase XerD [Mesorhizobium loti
           MAFF303099]
 gi|34222995|sp|Q98FX8|XERD_RHILO RecName: Full=Tyrosine recombinase xerD
 gi|14023833|dbj|BAB50438.1| site-specific recombinase [Mesorhizobium loti MAFF303099]
          Length = 305

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 136/297 (45%), Gaps = 30/297 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ +  ERG ++ TL SY  D                    +   +  +IRA++   
Sbjct: 8   EAFLEMMSAERGAAENTLSSYRRDLED---------ASSGIDGGLAGAAAADIRAYLDDI 58

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S  R LS I+ F K+L    + T+     + + KK+  LP+ ++E +   L+
Sbjct: 59  AERGFAPTSQARKLSAIRQFFKFLYAEGLRTDDPTGTLDSPKKARPLPKTMSEAETGRLI 118

Query: 139 DNVLLHTS-----HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           D   +        +  +    R  A++ +LY  GLR+SE + L       D     ++GK
Sbjct: 119 DRAAVEAGDAGLGYSDRLAALRLHALVEVLYATGLRVSELVGLPVTVAQRDDRFFMVRGK 178

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR--------GIRGKPLNPGVFQR 245
           GDK R+VPL    R A+  +       L     +P F               L+  VF R
Sbjct: 179 GDKERMVPLSAKARVAMRAW-------LAARAGVPAFADSPFLFPAASDSGYLSRQVFAR 231

Query: 246 YIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            ++ L    G+  +  + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V
Sbjct: 232 DLKGLAARAGIASAKISPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHV 288


>gi|257453533|ref|ZP_05618823.1| tyrosine recombinase XerD [Enhydrobacter aerosaccus SK60]
 gi|257448991|gb|EEV23944.1| tyrosine recombinase XerD [Enhydrobacter aerosaccus SK60]
          Length = 314

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 154/322 (47%), Gaps = 27/322 (8%)

Query: 7   PEIVSFELLKERQNWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           P  V    L +  +++Q    E   RGL+  T  +Y    R  ++       E    + I
Sbjct: 9   PRQVKALHLHDEPSYIQQFRQELLTRGLATNTRNAY---IRDLMLC------ETTCSKAI 59

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
            +   +++ A ++    Q    RS  R+LS +K F  +        ++   +++  K   
Sbjct: 60  TRWDASDVLACLAALYKQGKTARSQARALSSLKQFFLWQINANQRDDNPCEHIKTPKLGR 119

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           +LP+ L+E        + LL +   +  +  R+ A+  +LY CGLR+SE + L+   +  
Sbjct: 120 ALPKDLSESDV-----DALLASPDTSTPLGMRDQAMFEVLYACGLRVSELIHLSLSEVNL 174

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL------NIQLPLFRGIRGKP 237
           +   L++ GKGDK R+VPL       + +Y  L    L +      +    +F   +G  
Sbjct: 175 NAGWLQVTGKGDKTRLVPLGEVAIDVLTDYLTLARPQLCIMKNGRESRCQAVFLTQQGGY 234

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    F   I++  +  G+    + HTLRH+FATHLL++G DLRS+Q +LGH  LSTTQI
Sbjct: 235 MTRQNFWYVIKRYAKQAGIESEISPHTLRHAFATHLLNHGADLRSVQMLLGHSDLSTTQI 294

Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319
           YT+V +      + +++ Q HP
Sbjct: 295 YTHVATAR----LQQLHQQHHP 312


>gi|72161605|ref|YP_289262.1| site-specific tyrosine recombinase XerD [Thermobifida fusca YX]
 gi|71915337|gb|AAZ55239.1| tyrosine recombinase XerD [Thermobifida fusca YX]
          Length = 321

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 150/330 (45%), Gaps = 31/330 (9%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +PE  S  L    + +L +L +ERGL+  TLQSY  D  ++L FL   T   IT   +R 
Sbjct: 1   MPEQAS-RLHTAVRGYLDHLTVERGLAANTLQSYRRDLNRYLDFL---TARGIT--DLRD 54

Query: 66  LSYTEIRAFISKRRT-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           +   ++ +F+   R      + +G  S  R++  ++   ++  +  +T       +R   
Sbjct: 55  VRADDVASFLRTLREGDAHHRPLGANSAGRAVIAVRGLHRFALREGLTAHDPAHEVRPPA 114

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LP+A+   Q    V+ +L            R+ A++ LLYG G RISE + L   +
Sbjct: 115 LQRRLPKAITVAQ----VEALLAAADIGGGPRALRDRALIELLYGTGARISEVVGLDVDD 170

Query: 181 IM---------DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPL 229
           +           + + +R +GKG K RIVP+    R A+  Y       L    +    L
Sbjct: 171 VTRLRPDPHADTEVAAVRFRGKGGKERIVPVGRYARTAVDAYLVRARPGLAAAGRGSSAL 230

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F   RG  L        +       GL    + HTLRHSFATHL+  G D+R +Q +LGH
Sbjct: 231 FLNARGGRLTRQGAWAVLHAAAERAGL-RDVSPHTLRHSFATHLIDGGADVRVVQELLGH 289

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
             ++TTQ+YT V      D + E+Y   HP
Sbjct: 290 ASVTTTQVYTLVTV----DRLREVYAAAHP 315


>gi|326333662|ref|ZP_08199899.1| putative tyrosine recombinase XerC [Nocardioidaceae bacterium
           Broad-1]
 gi|325948568|gb|EGD40671.1| putative tyrosine recombinase XerC [Nocardioidaceae bacterium
           Broad-1]
          Length = 320

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 149/308 (48%), Gaps = 25/308 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIF---LAFYTEEKITIQTIRQLSYTEIRAFIS 76
           ++ ++L  ERGLS  T+++Y  D R  L     +     E I ++T+R        ++++
Sbjct: 28  DYERHLSAERGLSDHTVRAYLGDVRSLLDHAGRMGRTDPEGIDLRTLR--------SWLA 79

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           K++T      +L R  +  + F  +L +           + + K   +LP  L   +  +
Sbjct: 80  KQQTTGHSRTTLARRATAARVFCGWLVRTGRAQVDAGAALGSPKAHRTLPPVLRPDEVES 139

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+   +      T  +  R+ A+L +LY  G R+ E + L   ++  ++  +R+ GKG K
Sbjct: 140 LIAAAIAAAEDGTA-VGMRDIAVLEMLYATGSRVGELVGLDLDDVDYERRVVRVLGKGRK 198

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQL--RRY 253
            R+VP      +A+  +       L      P LF G RG  L+    QR +R L  RR 
Sbjct: 199 ERMVPFGGPAARALDRWIVRGRPQLVTESSGPALFLGARGGRLD----QRAVRTLVHRRL 254

Query: 254 LGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             +P +     H LRHS ATHLL  G DLRS+Q +LGH  L+TTQIYT+V+S    D + 
Sbjct: 255 ADVPGAPDLGPHGLRHSTATHLLEGGADLRSVQELLGHASLATTQIYTHVSS----DRLR 310

Query: 312 EIYDQTHP 319
           + Y Q HP
Sbjct: 311 KAYRQAHP 318


>gi|296105305|ref|YP_003615451.1| site-specific tyrosine recombinase XerC [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295059764|gb|ADF64502.1| site-specific tyrosine recombinase XerC [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 300

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 147/298 (49%), Gaps = 17/298 (5%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L +ER LS +TL +Y+   RQ    +    E  I +++ +Q     +R F+ + R +
Sbjct: 14  LRYLGVERQLSPITLLNYQ---RQLDAIMQIADE--IGLKSWQQCDAATVRGFVVRSRKK 68

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +   SL   LS ++SF  +L  +     +    +   K    LP+ ++      L+D  
Sbjct: 69  NLSPASLALRLSALRSFFDWLVSQGGLKANPAKGIATPKAPRHLPKNIDVDDVNRLLDID 128

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           L         +  R+ A+L ++YG GLR+SE ++L  +++  +   + + GKG K R +P
Sbjct: 129 L------NDPLAVRDRAMLEVMYGAGLRLSELVNLDLKHLDLESGEVWVMGKGSKERRLP 182

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           +  +    I  + DL    L    +  LF    GK ++    Q+   +     GL     
Sbjct: 183 IGRNAVSWIEHWLDLR--GLFGAEEDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVH 240

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  +YD  HP
Sbjct: 241 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 294


>gi|315604216|ref|ZP_07879282.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313922|gb|EFU61973.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 316

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 156/320 (48%), Gaps = 28/320 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++W+  L +E+G S  T+ +Y  D  +++  +     E     T+  +S  ++   ++  
Sbjct: 9   RDWVDYLRVEKGASTHTVSNYLRDASRYVRDM-----ESRGRATLTDVSAHDVEEHLAGL 63

Query: 79  RTQKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            + ++  R     S+ R+ + I+   +Y     +        +R  ++ + LP+AL+   
Sbjct: 64  ASGQVSGRPAAPSSVARACAAIRGLHRYALAEGVLNVDVTAQLRAPRQGSHLPKALS--- 120

Query: 134 ALTLVDNV--LLHTSH-ETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQ-STL 188
               VD V  LL  +H +   I  R++A+L LLY  G R+SEA++L+  ++ +D Q   +
Sbjct: 121 ----VDEVGRLLDAAHADDTPIGLRDAALLELLYATGARVSEAVALSADDLDLDGQVPVV 176

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRY 246
           R+ GKG K RIVP+     +A+  Y       L    +    LF   RG  L+       
Sbjct: 177 RLFGKGRKERIVPVGSFAIEALDAYRVRARPVLAARGSGSTALFLNSRGSALSRQSAWTA 236

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           IR+  +   L    + HTLRHSFATHLL  G  +R +Q +LGH  ++TTQIYT V +   
Sbjct: 237 IRRAAQAANLAHRVSPHTLRHSFATHLLEGGASVREVQELLGHASVATTQIYTRVTAT-- 294

Query: 307 GDWMMEIYDQTHPSITQKDK 326
              + E++  +HP     D+
Sbjct: 295 --VLREVFTVSHPRARGTDE 312


>gi|291279466|ref|YP_003496301.1| site-specific DNA tyrosine recombinase XerD [Deferribacter
           desulfuricans SSM1]
 gi|290754168|dbj|BAI80545.1| site-specific DNA tyrosine recombinase XerD [Deferribacter
           desulfuricans SSM1]
          Length = 293

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 145/285 (50%), Gaps = 14/285 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N+   L +E  LS+ T+++Y  D + FL F+     +  +  T+  +SY  I+  I K  
Sbjct: 6   NFKHYLLVEEYLSENTIKAYLSDVKAFLDFVKIKKYDIKSEDTV--ISY--IKNLIKKSY 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           + +    S+ R +S I  +  YL K K+  ++ +L +   KK   LP  LNE + L ++D
Sbjct: 62  SIE----SILRKISSISVYYDYLIKEKVIDKNPVLLIDKPKKWFKLPDFLNEDEILKILD 117

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            V   T H       R+  I+ +LY  G+RISE +++   N    +  +RI+GKG K R 
Sbjct: 118 TVDKSTPH-----GFRDYIIINMLYTSGMRISELVNIEVSNCDFRRGIIRIKGKGGKERF 172

Query: 200 VPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+   + + + +Y ++   + +       LF    G  L+     + +R+     G+  
Sbjct: 173 VPIHKKLIEELNKYLEIRHNYFVKGRDNGYLFLNKFGNKLSREYCWKIVRKYAEMAGIKK 232

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             + H  RH+FATHLL NG DLR IQ +LGH  + TT+IYT ++ 
Sbjct: 233 KVSPHVFRHTFATHLLKNGADLRVIQMLLGHSSILTTEIYTQLDD 277


>gi|269214488|ref|ZP_05986672.2| tyrosine recombinase XerC [Neisseria lactamica ATCC 23970]
 gi|269209617|gb|EEZ76072.1| tyrosine recombinase XerC [Neisseria lactamica ATCC 23970]
          Length = 334

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 145/306 (47%), Gaps = 13/306 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+N+ +  G S+ T+ +Y  D  +    LA    E       + LS  +  A + +   
Sbjct: 42  YLENI-VREGKSEHTVAAYRRDLEELFALLAQMPSE-AEGGVPQDLSRRDFTAALRRLSQ 99

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  R+L R LS  + +  +L KR +        +   K+   +P+AL ++    ++D 
Sbjct: 100 RGLNARTLARKLSSWRQYCAWLVKRGLMCADPTAGISPPKQPQRIPKALPQEWLNRMLDL 159

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GKG K R V
Sbjct: 160 PV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQV 215

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           PL     +A+  Y    P     +    LF G  G  L+    Q+ + Q     G     
Sbjct: 216 PLTGKSAEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAINGDGRHV 272

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +YD+ HP 
Sbjct: 273 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAHPR 328

Query: 321 ITQKDK 326
             +++K
Sbjct: 329 AKRQEK 334


>gi|157964440|ref|YP_001499264.1| site-specific tyrosine recombinase XerD [Rickettsia massiliae MTU5]
 gi|157844216|gb|ABV84717.1| Tyrosine recombinase XerD [Rickettsia massiliae MTU5]
          Length = 306

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 96/300 (32%), Positives = 152/300 (50%), Gaps = 28/300 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L  ER LSK ++ SY+ D   F  +LA     ++ I T        IR +I    +
Sbjct: 7   FLEMLLAERALSKNSILSYKRDLFDFHNYLATQKLSELNITT------ENIRDWIEYLAS 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS+ R +S IKS+ K+L     T  + +LN+   K  N LP  L+  Q    + +
Sbjct: 61  NDLQARSINRKISTIKSYYKFLISENHTAFNPVLNVDLPKYQNKLPEILSIDQ----IKS 116

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-------LRIQGK 193
           +L H S +      R +A+++LLY  G R+SE +SL   +I+ ++++         + GK
Sbjct: 117 LLEHCSQDNSPEGIRLNAMIHLLYASGFRVSELVSLKLADILTNKTSKGEVRKIFSVLGK 176

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LF--RGIRGKPLNPGVFQRY 246
           G+K R++ +      +I +Y  L   D+ +N   P     LF    + G  +    F   
Sbjct: 177 GNKERVIVINEQAVISIAKY--LAIRDVFVNKAKPRNLIYLFPSSALAGY-MTRQNFAIL 233

Query: 247 IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           ++    Y GL P   + H LRHSFA+HLL  G DLR IQ +LGH  +STTQIYT++ + +
Sbjct: 234 LKSAALYAGLNPEHISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQTNH 293


>gi|170693510|ref|ZP_02884669.1| tyrosine recombinase XerD [Burkholderia graminis C4D1M]
 gi|170141665|gb|EDT09834.1| tyrosine recombinase XerD [Burkholderia graminis C4D1M]
          Length = 322

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/278 (30%), Positives = 133/278 (47%), Gaps = 13/278 (4%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E GLS+ TL +Y  D R F  +LA      + I      S  ++ A+ + RR  K  
Sbjct: 41  LWLEHGLSRNTLDAYRRDLRLFSEWLAQTRGASLDIA-----SEADLNAYSAARRKDK-- 93

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R LS  + +  +  +         L +R+ K+    P  L+E Q   L+    + 
Sbjct: 94  STSANRRLSVFRRYYGWAVREHRAKVDPTLRIRSAKQPPRFPSTLSEAQVEALLGAPDID 153

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           T      +  R+  +L L+Y  GLR++E ++L    +  ++  +R+ GKG K R++P   
Sbjct: 154 TP-----LGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKERLIPFGE 208

Query: 205 SVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
                I  Y  D  P  L       LF   R + +    F   I++     G+    + H
Sbjct: 209 EAHGWIERYLRDARPALLGARAADALFVTNRAEGMTRQQFWNIIKRHAAAAGVHAPLSPH 268

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           TLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 269 TLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHV 306


>gi|254804308|ref|YP_003082529.1| site-specific recombinase [Neisseria meningitidis alpha14]
 gi|254667850|emb|CBA03883.1| site-specific recombinase [Neisseria meningitidis alpha14]
          Length = 305

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 148/306 (48%), Gaps = 13/306 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+N+ +  G S+ T+ +Y  D  +    LA    E       + LS  +  A + +   
Sbjct: 13  YLENI-VREGKSEHTVAAYRRDLEELFALLAQMPSEDAG-GVPQDLSRRDFTAALRRLSQ 70

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  R+L R LS  + +  +L +R +       +++  K+   +P+AL ++    ++D 
Sbjct: 71  RGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEWLNRMLDL 130

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GKG K R V
Sbjct: 131 PV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQV 186

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           PL+    +A+  Y    P     +    LF G  G  L+    Q+ + Q     G     
Sbjct: 187 PLVGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHV 243

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +YD+ HP 
Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAHPR 299

Query: 321 ITQKDK 326
             ++D+
Sbjct: 300 AKRQDE 305


>gi|325141563|gb|EGC64029.1| tyrosine recombinase XerC [Neisseria meningitidis 961-5945]
 gi|325197634|gb|ADY93090.1| tyrosine recombinase XerC [Neisseria meningitidis G2136]
          Length = 305

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 148/306 (48%), Gaps = 13/306 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+N+ +  G S+ T+ +Y  D  +    LA    E       + LS  +  A + +   
Sbjct: 13  YLENI-VREGKSEHTVAAYRRDLEELFALLAQMPSEDAG-GVPQDLSRRDFTAALRRLSQ 70

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  R+L R LS  + +  +L +R +       +++  K+   +P+AL+++    ++D 
Sbjct: 71  RGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALSQEWLNRMLDL 130

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GKG K R V
Sbjct: 131 PV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQV 186

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           PL     +A+  Y    P     +    LF G  G  L+    Q+ + Q     G     
Sbjct: 187 PLTGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHV 243

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +YD+ HP 
Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAHPR 299

Query: 321 ITQKDK 326
             ++D+
Sbjct: 300 AKRQDE 305


>gi|227824418|ref|ZP_03989250.1| recombinase [Acidaminococcus sp. D21]
 gi|226904917|gb|EEH90835.1| recombinase [Acidaminococcus sp. D21]
          Length = 298

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 148/301 (49%), Gaps = 20/301 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  L +E GL++ T +SY  D R F +++          + I+++S  +I  ++S  + 
Sbjct: 14  FMDYLTVEMGLARNTRESYGRDLRLFAVWVK---------KPIKEISRDDILTYMSVLKA 64

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     S  R L+ +K+F +++             + +  +   LP+ L+  +   L + 
Sbjct: 65  QNYAVTSSARKLAALKAFFRFMTAEGTIEVDPCEVVESETRGMVLPKVLSVDEVNRLFEA 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L T         R+  +L ++Y  G+R+SE L+L   ++      +   GKG K R++
Sbjct: 125 PDLDTPE-----GYRDRTMLEVMYATGMRVSELLALKVGSVNLASHYVIAYGKGAKERLI 179

Query: 201 PLLPSVRKAILEYYD-LCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           PL     + + EY   + P  +  N     LF  IRG  +    F + I+     + +  
Sbjct: 180 PLGHYAIEYLKEYLSRVRPHFVKENRPCDDLFLTIRGTGMTRQRFWQLIKNYGLKVHIAK 239

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           S T H LRHSFATH+L NG DLR++Q +LGH  +STTQIYT++ +      +  IYD++H
Sbjct: 240 SLTPHILRHSFATHMLDNGADLRTVQELLGHSDISTTQIYTHLTNHR----LKAIYDKSH 295

Query: 319 P 319
           P
Sbjct: 296 P 296


>gi|126729514|ref|ZP_01745327.1| tyrosine recombinase XerD [Sagittula stellata E-37]
 gi|126709633|gb|EBA08686.1| tyrosine recombinase XerD [Sagittula stellata E-37]
          Length = 311

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 137/278 (49%), Gaps = 21/278 (7%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           TL +Y+ D      +L   T+  +   T ++    ++ +++    T  +   +  R LS 
Sbjct: 26  TLAAYQRDLTHVADWL---TDHALDFATAQK---KDVESYLIDCDTLGLSRATRARRLSA 79

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           IK   ++  +  +  ++  + +    +   LP+ L+ +Q   L+D    H   E     A
Sbjct: 80  IKQIYRFAFEEGLREDNPAVQIAGPGREKRLPKTLSVEQVDRLLDAAANHGRTEAD--RA 137

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           RN+ ++ +LY  G+R++E +SL       D   L I+GKG K R+VPL P  R+A+  + 
Sbjct: 138 RNACLMQVLYATGMRVTELVSLPVSAARGDPRMLLIRGKGGKERMVPLSPPAREALTAW- 196

Query: 215 DLCPFDLNL--------NIQLPLFRGIRGKP--LNPGVFQRYIRQLRRYLGLPLS-TTAH 263
            L   D            +  P      GK   L    F   I++     G+P S  T H
Sbjct: 197 -LSARDAAASEAQAATGAVPSPFLFPSHGKAGHLTRHAFYMLIKEFALEAGVPPSEVTPH 255

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           TLRH+FATHLL+NG DLR+IQ++LGH  ++TT+IYT+V
Sbjct: 256 TLRHAFATHLLANGADLRAIQTLLGHADVATTEIYTHV 293


>gi|313633457|gb|EFS00282.1| tyrosine recombinase XerC [Listeria seeligeri FSL N1-067]
          Length = 300

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 153/309 (49%), Gaps = 21/309 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q +L  L  ER  S+ T  +YE D   F  FL    E+ IT     Q+++ ++R ++
Sbjct: 6   KWEQLFLDYLHSERNYSENTSTAYENDLIDFRRFL---NEQAIT--EYSQVTFLDVRIYL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++ + +     ++ R +S ++SF  +L +  + TE+    + + K    LP+    ++  
Sbjct: 61  TELKQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEME 120

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L    +++  +ET  +  R+  +L +LYG G+R+SE   +   +I     ++ I+GKG+
Sbjct: 121 ALFQ--VVYEDNET--LTLRDRVLLEVLYGTGIRVSECAGILLTDIDKTYQSILIRGKGN 176

Query: 196 KIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           K R VP       AI +Y D     +  F+        L     G+PL     +  + ++
Sbjct: 177 KERYVPFGAYAEDAITDYLDSRIELMKHFN---KTHDSLLINHYGEPLTTRGIRYCLTKI 233

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                L      H LRH+FAT LL+NG D+R++Q +LGH  LS+TQIYT+V  ++    +
Sbjct: 234 ISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----L 289

Query: 311 MEIYDQTHP 319
              Y + HP
Sbjct: 290 KSTYMKHHP 298


>gi|182680307|ref|YP_001834453.1| integrase family protein [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182636190|gb|ACB96964.1| integrase family protein [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 325

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 151/319 (47%), Gaps = 28/319 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  +  ERG ++ TL++Y  D   +   LA         +++   +  +IR ++   
Sbjct: 11  EAFLDMIGAERGAARNTLEAYGRDLTDYAQALADRG------RSLLDATSEDIRHYLGDL 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA---L 135
            TQ +   S  R LS I+ F ++L      ++   L +   ++S  LP+ L   +    L
Sbjct: 65  ETQGLKPSSSARRLSAIRQFHRFLASESHRSDDPALILEGPRRSRGLPKTLTMAEVERLL 124

Query: 136 TLVDNVLLHTSHE--TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           T+    L   +     +   AR + +L LLY  GLR+SE +SL    +      + I+GK
Sbjct: 125 TVSKEGLEDPARPLGERVRAARTACLLELLYATGLRVSELVSLPDSAMRGADPLITIRGK 184

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-------LNPGVFQRY 246
           G + R+VPL P  R+AI  Y DL          L L +G    P       L+   F R 
Sbjct: 185 GGRERLVPLPPVARRAITFYRDLLH-----QKHLGLSKGGWLFPADSETGYLSRQAFARD 239

Query: 247 IRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           ++ +    G+  +  + H LRH+FA+HLL NG DLR +Q +LGH  ++TTQIYT+V  + 
Sbjct: 240 LKVVAAAAGIDTARISPHVLRHAFASHLLQNGADLRIVQELLGHADIATTQIYTHVLDER 299

Query: 306 GGDWMMEIYDQTHPSITQK 324
               M  +    HP   +K
Sbjct: 300 ----MKAMVRDLHPLAEEK 314


>gi|300933911|ref|ZP_07149167.1| integrase/recombinase [Corynebacterium resistens DSM 45100]
          Length = 325

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 145/305 (47%), Gaps = 19/305 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + ++L+   G S+ T+ +Y  D +  L  L    E   T++  R +    + A  S+ 
Sbjct: 13  EEYEEHLQFVVGRSENTITAYRKDLKAALEGLDSVDE--FTLEHARDVLGWALDAGHSRS 70

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S+ R +S +K F  +L  +     + +  +R  K   SLPR L  +QA  ++
Sbjct: 71  --------SMARMVSSLKGFGSFLAHKGWVEANPVAALRAPKLDRSLPRVLRTEQATAVL 122

Query: 139 DNVLLHTS-HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           D    H   +    +  R+ A+  LL+  G+R++E       ++    + +R+ GKG+K 
Sbjct: 123 DRARDHARINNEDPLATRDWAMAELLFATGMRVAELTGTDIDDVDFTHNVVRVVGKGNKQ 182

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLN-LNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           R+VP  P+ R A+  +       LN  N Q    LF G RG  +N    +  I +L    
Sbjct: 183 RVVPFGPTARTAVEAWISRRKEVLNPANGQGVAALFLGARGGRINQRQVRSVINELTDAA 242

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G P   + H  RHS AT +L  G DLR +Q +LGH  + TTQIYT+V    G + +  ++
Sbjct: 243 GAP-RMSPHGFRHSAATAILEGGADLRVVQEMLGHASMQTTQIYTHV----GTERLKAVF 297

Query: 315 DQTHP 319
           +Q HP
Sbjct: 298 NQAHP 302


>gi|116254087|ref|YP_769925.1| site-specific tyrosine recombinase XerD [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115258735|emb|CAK09841.1| putative tyrosine recombinase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 317

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 97/320 (30%), Positives = 156/320 (48%), Gaps = 23/320 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L+ +  ERG +  TLQSYE D      FL   TE  I +    + + T++ A++S  
Sbjct: 10  ESFLEMMSAERGAAANTLQSYERDLDDVRSFL---TERSIRLT---EAASTDLAAYLSSL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S  R L+ ++ F K+L    +  +     +   KK   LP+ +  ++   L+
Sbjct: 64  ARKGFKPSSQARRLAAMRQFYKFLYAEGLRADDPTGILDAPKKGRPLPKTMGVEEVGRLL 123

Query: 139 DNVLLHTSHETKWIDARNSAILYLL--YGCGLRISEALSLTPQNIMDDQST-LRIQGKGD 195
                           R   +  L   Y  G+R+SE +SL P  ++D +   L I+GKG+
Sbjct: 124 SRAEAEAEDPAPGQLQRLRMLALLELLYATGMRVSELVSL-PARVLDQEGRFLMIRGKGN 182

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNP-GVFQRYIRQ 249
           K R+VPL  S   A+  Y  L   + N  ++ P     LF     +   P  VF R ++ 
Sbjct: 183 KERLVPLSQSAISALKSYGRLLAVE-NAAVKEPQESPWLFPSASKEGYLPRQVFARDLKN 241

Query: 250 LRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           L    GL P   + H +RH+FA+HLL+NG DLR +Q +LGH  +STTQIYT+V  +    
Sbjct: 242 LAIRAGLTPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER--- 298

Query: 309 WMMEIYDQTHPSITQKDKKN 328
             ++   QTH  + ++ KK+
Sbjct: 299 --LQQLVQTHHPLAKQAKKH 316


>gi|160892553|ref|ZP_02073343.1| hypothetical protein CLOL250_00082 [Clostridium sp. L2-50]
 gi|156865594|gb|EDO59025.1| hypothetical protein CLOL250_00082 [Clostridium sp. L2-50]
          Length = 292

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 149/300 (49%), Gaps = 19/300 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L+N+   +  S+ T+ SY    R  + F  FY E     + IR ++ T I  +I    
Sbjct: 10  DYLKNI---KKSSENTVASYR---RDLVKFSDFYREN--GTEDIRSINETNINTYILYLE 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  ++ RS++ IKSF  +L + KI  +   +N++  K    +P  L  ++      
Sbjct: 62  KNGKSMATVSRSIASIKSFFGFLFREKILMDDPSVNIKPPKIEKKMPDILTIEEV----- 116

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           N LL    +    + R+ A+L LLY  G+R+SE ++L   ++      +       K RI
Sbjct: 117 NRLLDQPGDQSPKEIRDRAMLELLYATGIRVSELVTLKITDVNLKMGYIECHDLR-KSRI 175

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +P+  S ++A+  Y      D+  N +  LF   +G P+    F + I+      G+   
Sbjct: 176 IPIEDSAQRALDNYISNVRGDMCKNSEY-LFSNCKGTPMTRQGFWKIIKVYADKAGIDKD 234

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T H +RHSFA+HL++NG DL+++Q +LGH  +STTQIY  +NSK     + E Y + HP
Sbjct: 235 ITPHMIRHSFASHLVNNGADLKAVQEMLGHADISTTQIY--LNSKQS--RLKEEYQKAHP 290


>gi|329724319|gb|EGG60831.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU144]
          Length = 296

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 168/312 (53%), Gaps = 32/312 (10%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K ++ +L  L++ER  S+ TL+SY  D  QF  FL     E + ++T     Y + R ++
Sbjct: 3   KIQETFLYMLKVERNFSEYTLKSYHDDLVQFNNFLE---REHLQLET---FEYKDARNYL 56

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNE 131
           +   + ++   ++ R +S +++F ++     +T +++I+N    + + KK   LP+   E
Sbjct: 57  AFLYSNQLKRTTVSRKISTLRTFYEFW----MTQDNSIINPFVQLVHPKKEKYLPQFFYE 112

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           ++   L   V     H+ K    R+  I+ LLY  G+R+SE +++  ++I  +   +++ 
Sbjct: 113 EEMEALFQTV----EHDNKK-GIRDKVIIELLYATGIRVSELINIKLKDIDMNLPGVKVL 167

Query: 192 GKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQ 249
           GKG+K R +P     R++I  Y +   P  L  +  L +   ++G P+   GV  RY+  
Sbjct: 168 GKGNKERFIPFGEFCRQSIERYLEEFQPKQLANHDYLIV--NMKGDPITERGV--RYVLN 223

Query: 250 --LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
             ++R  G+      H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++   
Sbjct: 224 DVVKRTAGVN-DIHPHKLRHTFATHLLNQGADLRTVQSLLGHANLSTTGRYTHVSNQQ-- 280

Query: 308 DWMMEIYDQTHP 319
             + ++Y   HP
Sbjct: 281 --LRKVYLNAHP 290


>gi|319401458|gb|EFV89668.1| tyrosine recombinase XerC [Staphylococcus epidermidis FRI909]
          Length = 296

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 167/312 (53%), Gaps = 32/312 (10%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K ++ +L  L++ER  S  TL+SY  D  QF  FL     E + ++T     Y + R ++
Sbjct: 3   KIQETFLYMLKVERNFSAYTLKSYHDDLVQFNNFLE---REHLQLET---FEYKDARNYL 56

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNE 131
           +   + ++   ++ R +S +++F ++     +T +++I+N    + + KK   LP+   E
Sbjct: 57  AFLYSNQLKRTTVSRKISTLRTFYEFW----MTQDNSIINPFVQLVHPKKEKYLPQFFYE 112

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           ++   L   V     H+ K    R+  I+ LLY  G+R+SE +++  ++I  +   +++ 
Sbjct: 113 EEMEALFQTV----EHDNKK-GIRDKVIIELLYATGIRVSELINIKLKDIDMNLPGVKVL 167

Query: 192 GKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQ 249
           GKG+K R +P     R++I  Y +   P  L  +  L +   ++G P+   GV  RY+  
Sbjct: 168 GKGNKERFIPFGEFCRQSIERYLEEFQPKQLANHDYLIV--NMKGDPITERGV--RYVLN 223

Query: 250 --LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
             ++R  G+      H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++   
Sbjct: 224 DVVKRTAGVN-DIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQ-- 280

Query: 308 DWMMEIYDQTHP 319
             + ++Y   HP
Sbjct: 281 --LRKVYLNAHP 290


>gi|332886009|gb|EGK06253.1| tyrosine recombinase XerD [Dysgonomonas mossii DSM 22836]
          Length = 299

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 152/291 (52%), Gaps = 17/291 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++++ +N+L    +E+ LS  ++ +Y  D  +   FL     E + ++ +   +   ++ 
Sbjct: 7   IVRKYRNYLL---LEKSLSPNSIDAYMTDLAKLSGFLQ---NENLKVEDV---TLDNLQQ 57

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+++     I  RS+ R +SGIKSF  +L             + + K    LP  L   +
Sbjct: 58  FVAQLYDIGINARSVARIISGIKSFYDFLVLDGYMQNDPTELLDSPKIGLKLPTVLALDE 117

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+  + L T         RN AIL  LY CGLRISE  +L   ++  D+  +++QGK
Sbjct: 118 IEKLMSVIDLSTKE-----GQRNRAILETLYSCGLRISELTTLKFSDLFFDEGFIKVQGK 172

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G K R+VP+  +  K I E Y +   ++N+    +  LF   RG  ++  +   +I++  
Sbjct: 173 GSKQRLVPISHTAIKEI-EKYLIYRKEINVKKGSEDALFLSNRGTAISRIMVFHFIKEYA 231

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              G+  + + HT RHSFATHLL  G ++R+IQ +LGH +++TT+IYT+++
Sbjct: 232 IQAGIKKTISPHTFRHSFATHLLEGGANIRAIQLMLGHEKITTTEIYTHMD 282


>gi|75674591|ref|YP_317012.1| tyrosine recombinase XerD [Nitrobacter winogradskyi Nb-255]
 gi|74419461|gb|ABA03660.1| tyrosine recombinase XerD subunit [Nitrobacter winogradskyi Nb-255]
          Length = 319

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 96/305 (31%), Positives = 145/305 (47%), Gaps = 42/305 (13%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLA-----FYTEEKITIQTIRQ-LSYTEIRAF 74
           +L  L  E+G  + TL +Y  D      FLA     F   E    QT+R  L+  ++R F
Sbjct: 15  FLDMLAAEQGAGENTLDAYRRDLEDLSAFLARARRNFVIAE---TQTLRDYLNDLDLRGF 71

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
            S          S+ R LS ++   ++L   ++ ++     +   K+  SLP+ L+    
Sbjct: 72  KSS---------SVARRLSAMRHLFRFLLSERVRSDDPAAILSGPKRGRSLPKVLS---- 118

Query: 135 LTLVDNVLLHTSHETKWIDA---------RNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           +  VD +L     + + +DA         R   +L +LY  GLR+SE +SL       D 
Sbjct: 119 IADVDRLLGRAKADAESLDAPPARRLRAARLYCLLEVLYATGLRVSELVSLPLSAARRDA 178

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--------LPLFRGIRGKP 237
             + ++GKGDK R+VPL  + R+A+ +Y                      P F G  G  
Sbjct: 179 RMIVVRGKGDKERLVPLNNASRQAMADYLQTMADQRGAGKAASPRQSWLFPSF-GESGH- 236

Query: 238 LNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           L    F R +++L    GL P   + H LRH+FA+HLL NG DLR +Q++LGH  +STTQ
Sbjct: 237 LTRQHFARELKELAAAAGLAPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQ 296

Query: 297 IYTNV 301
           IYT+V
Sbjct: 297 IYTHV 301


>gi|254251586|ref|ZP_04944904.1| Site-specific recombinase XerD [Burkholderia dolosa AUO158]
 gi|124894195|gb|EAY68075.1| Site-specific recombinase XerD [Burkholderia dolosa AUO158]
          Length = 316

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 148/323 (45%), Gaps = 22/323 (6%)

Query: 2   EGNNLPEIVSFELLKERQN---WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI 58
           E +      S  LL  R +   +   L +E GL++ TL +Y  D   F  +LA   +  +
Sbjct: 9   EADGAEGAASPALLASRASIDVFCDALWLEHGLARNTLDAYRRDLMLFSQWLAATHDAPL 68

Query: 59  TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
                       +  +I+ R   K    S  R LS  + +  +  +    +    L + +
Sbjct: 69  DAA-----DEAMVTGYIAARSDGKA--TSSNRRLSVFRRYYGWAVREHRASADPTLRITS 121

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            K++   P  L+E Q   L+    + T      +  R+  +L L+Y  GLR+SE ++L  
Sbjct: 122 AKQAARFPSTLSEAQVEALLGAPDIDTP-----LGLRDRTMLELMYASGLRVSELVTLKT 176

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGK 236
             +  ++  +R+ GKG K R+VP    V    +E Y  D  P  L       LF   RG 
Sbjct: 177 VEVGLNEGVVRVMGKGSKERLVPF-GEVAHGWIERYLRDARPALLGARAADALFVTARGD 235

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            +    F   I++  R+  +    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQ
Sbjct: 236 GMTRQQFWNIIKRHARHADVRAHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQ 295

Query: 297 IYTNVNSKNGGDWMMEIYDQTHP 319
           IYT+V  +     +  ++ Q HP
Sbjct: 296 IYTHVARER----LKTLHAQHHP 314


>gi|118444203|ref|YP_878098.1| tyrosine recombinase XerD [Clostridium novyi NT]
 gi|118134659|gb|ABK61703.1| tyrosine recombinase XerD [Clostridium novyi NT]
          Length = 292

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 154/300 (51%), Gaps = 31/300 (10%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           ++ LSK T+++Y  D  +F  FL    E+      I       I A++   + +K  D S
Sbjct: 14  KKELSKNTIEAYNRDIIKFCKFLKEREED------ILDADMVSIMAYVQTLKKEKKADSS 67

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--LLHT 145
           + RS+  I++F KYL +     ++ ++N    K   ++P  L        VD V   L+ 
Sbjct: 68  IIRSIVSIRNFYKYLIRMGKDVDNPLINYEVPKNKRTIPEILT-------VDEVEKFLNA 120

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
              +++   R+ A+L L+Y  G+++SE L +T  +I      ++ +G  DK RI+P+   
Sbjct: 121 PDCSEYKGIRDKAMLELMYATGMKVSELLRVTIFDINLKLCYVKCKGVKDKERIIPIGSY 180

Query: 206 VRKAILEYYDLCPFDLNLNIQLP------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
               + EY       LN+  ++       LF  +RG  +    F + +++  +  G+   
Sbjct: 181 AVNCLNEY-------LNVRDKMSAANSETLFCNLRGGKMTRQGFWKIVKKYAKDAGINKK 233

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
             ++TLRHSFA HLL NG D++S+Q +LGH  ++TTQIY++++ +N    ++++Y + HP
Sbjct: 234 IDSYTLRHSFAVHLLQNGADIKSVQELLGHNTIATTQIYSSISKQNK---IVDVYKKAHP 290


>gi|294012386|ref|YP_003545846.1| integrase/recombinase XerD [Sphingobium japonicum UT26S]
 gi|292675716|dbj|BAI97234.1| integrase/recombinase XerD [Sphingobium japonicum UT26S]
          Length = 305

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 149/304 (49%), Gaps = 30/304 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECD---TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +L+ +  ERG S+ TL +Y  D     + +  L+  T +++   T    ++ E+ A    
Sbjct: 11  FLEMMAAERGASRNTLLAYRADLTGAGEIVGGLSSATRDRLAELTT---AWAELAA---- 63

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    S+ R  S +++F  +L++  +  ++    +       SLP+ L+ ++  +L
Sbjct: 64  --------SSVARKSSALRAFYAFLEEEGLRADNPSSALPRPVTRRSLPKILSTQEVDSL 115

Query: 138 VDNVL--LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
              +   L   H    +D R SA++ LLYG GLR +E +SL  + +  D+  L ++GKG 
Sbjct: 116 FALIAGKLAVEHPAP-LDLRLSALIELLYGSGLRATELVSLPRRALASDRPFLILKGKGA 174

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           + R+VP+    R A+  +    P D      L LF   +       ++Q           
Sbjct: 175 RERLVPISDRARAAVAAWLHHVPAD-----SLWLFPSGKSHVSRIRLYQMVKALAAAAGI 229

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            P   + H LRH+FATHLL  G DLR++QS+LGH  + TTQIYT+V+S+     ++E+ +
Sbjct: 230 APERVSPHVLRHAFATHLLEGGADLRALQSMLGHADIGTTQIYTHVDSRR----LVELVN 285

Query: 316 QTHP 319
             HP
Sbjct: 286 SRHP 289


>gi|302343317|ref|YP_003807846.1| integrase family protein [Desulfarculus baarsii DSM 2075]
 gi|301639930|gb|ADK85252.1| integrase family protein [Desulfarculus baarsii DSM 2075]
          Length = 325

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 146/300 (48%), Gaps = 24/300 (8%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSL 88
           G+   T Q+Y  D RQ   F+A     K   +   Q+   ++RA++++R RT      ++
Sbjct: 26  GVMPRTRQAYARDARQLAEFIAV----KRGGKPWGQVDADDVRAWLAERLRTSARA--TV 79

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKK-SNSLPRALNEKQALTLVDNVLLHTSH 147
            R L+  +++ ++L++  +  ESN   +    K    LP  L+  +A  LVD    +   
Sbjct: 80  GRKLAAARAWFEFLRRAGLV-ESNPARLAQPPKLEKKLPARLSVDEAFHLVDGP--NRPR 136

Query: 148 ETKWIDA-------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRI 199
             +  DA       R++A+L LLY  GLR+ E ++L   ++  D    R+ QGKG K R+
Sbjct: 137 PGRRDDAKATARRLRDAAVLELLYSSGLRVGELVALDRPDLRLDLGVARVRQGKGGKERV 196

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VP+     +A+  Y    P  L             G+    GV Q+ +   +  L +   
Sbjct: 197 VPVGAKAAQALERYLAARPALLAGEAAALFLNNAGGRLSVRGV-QKIVAANQDGLAIGRR 255

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRH+ ATHLL  G DLRS+Q +LGH  LSTTQ Y ++      D ++++YDQ HP
Sbjct: 256 IGPHALRHAMATHLLEGGADLRSVQEMLGHASLSTTQKYLHLTM----DHLLKVYDQAHP 311


>gi|326316149|ref|YP_004233821.1| tyrosine recombinase XerD [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323372985|gb|ADX45254.1| tyrosine recombinase XerD [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 303

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 152/301 (50%), Gaps = 15/301 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  L +E GLS+ TL +Y  D   +  +L  +  +  T   +   +   ++A+ S R  
Sbjct: 14  FIDALWLEDGLSRNTLAAYRRDLALYAQWLGQHAPD--TAGALDATAEHHLKAYFSARHA 71

Query: 81  QKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           +     S  R L+ ++ + ++ L++R+I  +  +  ++  ++   +P+ L+  Q      
Sbjct: 72  ETRAT-SANRRLTVLRRYFQWALRERRIGADPTV-RLQAARQPLRVPKTLSAAQV----- 124

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL     +  +  R+ A+L L+Y  GLR++E ++L   +    +  LR+ GKG K R+
Sbjct: 125 EALLQAPDTSTPLGLRDRAMLELMYASGLRVTELVTLKTYHASLSEGVLRVMGKGSKERL 184

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP      + +  Y +    D+    Q   LF   RG  +   +F   +++  +  G+ +
Sbjct: 185 VPFGEVAAQWMQRYLNEARADILAGQQTDDLFVTRRGAGMTRAMFWVVVKKHAQAAGITV 244

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HTLRH+FATHLL++G DLR +Q +LGH  +STT IYT+V  +     +  ++ Q H
Sbjct: 245 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARER----LKALHAQHH 300

Query: 319 P 319
           P
Sbjct: 301 P 301


>gi|190893664|ref|YP_001980206.1| tyrosine site-specific integrase/recombinase [Rhizobium etli CIAT
           652]
 gi|190698943|gb|ACE93028.1| tyrosine site-specific integrase/recombinase protein [Rhizobium
           etli CIAT 652]
          Length = 383

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 98/322 (30%), Positives = 156/322 (48%), Gaps = 27/322 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR--QLSYTEIRAFIS 76
           +++L+ +  ERG +  TLQSYE D      FL          ++IR  + +  ++ A+++
Sbjct: 76  ESFLEMMSAERGAAANTLQSYERDLDDIRSFL--------NGRSIRLTEAASADLSAYLA 127

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               Q     S  R L+ ++ F K+L    I T+     +   KK   LP+ +  ++   
Sbjct: 128 SLARQGFKPSSQARRLAAMRQFYKFLYAEGIRTDDPTGVLDAPKKGRPLPKTMGVEEVSR 187

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLL--YGCGLRISEALSLTPQNIMDDQST-LRIQGK 193
           L+                R   +  L   Y  G+R+SE +SL P  ++D +   L I+GK
Sbjct: 188 LLSQAQAEADDPAPGQLQRLRMLALLELLYATGMRVSELVSL-PARVLDQEGRFLMIRGK 246

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNP-GVFQRYI 247
           G+K R+VPL  S  KA+  Y  L   + N   + P     LF     +   P  VF R +
Sbjct: 247 GNKERLVPLSQSAIKALKSYGRLLAAE-NAAAKEPQESPFLFSAASKEGYLPRQVFARDL 305

Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           + L    GL P   + H +RH+FA+HLL+NG DLR +Q +LGH  +STTQIYT+V  +  
Sbjct: 306 KNLAIRAGLTPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER- 364

Query: 307 GDWMMEIYDQTHPSITQKDKKN 328
               ++   QTH  + ++ KK+
Sbjct: 365 ----LQQLVQTHHPLAKQAKKH 382


>gi|126435536|ref|YP_001071227.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. JLS]
 gi|126235336|gb|ABN98736.1| tyrosine recombinase XerD subunit [Mycobacterium sp. JLS]
          Length = 318

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 155/326 (47%), Gaps = 26/326 (7%)

Query: 7   PEIVSFELLKER-QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT---IQT 62
           P  V    L ++ Q +L +L IERG++  TL SY  D R++         E +T   ++ 
Sbjct: 3   PSAVRRSALDDQLQGYLDHLTIERGVAANTLSSYRRDLRRY--------SEHLTGRGVED 54

Query: 63  IRQLSYTEIRAF-ISKRR------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           + +++ +++  F ++ RR       Q +   S  R+L  ++   ++     +T       
Sbjct: 55  LAKVTESDVSDFLVALRRGDPDTGAQALSAVSAARALIAVRGLHRFATAEGLTDVDVARA 114

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           ++       LP++L+  + L L+D      S     +  RN A+L LLY  G RISEA+ 
Sbjct: 115 VKPPTPGRRLPKSLSIDEVLALLDGAG-GDSEADGPLTLRNRALLELLYSTGARISEAVG 173

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGI 233
           L   ++     ++ ++GKG K R+VP+      A+  Y      DL    +    +F   
Sbjct: 174 LDIDDVDTHARSVLLRGKGGKQRLVPIGRPAVSALDAYLVRGRPDLARRGRGTPAIFLNA 233

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           RG  L+     + ++      G+  + + HTLRHSFATHLL  G D+R +Q +LGH  ++
Sbjct: 234 RGGRLSRQSAWQVLQDAADRAGITSAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVT 293

Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHP 319
           TTQIYT V        + E++   HP
Sbjct: 294 TTQIYTMVTVHA----LREVWAGAHP 315


>gi|224025282|ref|ZP_03643648.1| hypothetical protein BACCOPRO_02021 [Bacteroides coprophilus DSM
           18228]
 gi|224018518|gb|EEF76516.1| hypothetical protein BACCOPRO_02021 [Bacteroides coprophilus DSM
           18228]
          Length = 314

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 149/287 (51%), Gaps = 20/287 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + Q L++E+  S  T+ +Y  D  + + +L    ++ +      +++  ++  F +    
Sbjct: 14  YKQYLKLEKSFSSNTIDAYLTDLDKLMAYLTLEGKDCL------EVTLDDLETFSAGLHD 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             I  RS  R LSG+++F ++L       +     + + +    LP  L  ++   L+ +
Sbjct: 68  IGINARSQARILSGVRAFYRFLLLEDYIQQDPCELLESPQTGRHLPDVLTVEEIDRLIGS 127

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +   +S E +    RN AIL  LY CGLR+SE  +L   ++  ++  ++++GKG K R+V
Sbjct: 128 ID-RSSREGQ----RNRAILETLYSCGLRVSELCNLKLSDLYLNEGFIKVEGKGSKQRLV 182

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           P+ P   KAI E  +  P + N  +  P     +F    GK ++  +    I++L    G
Sbjct: 183 PISP---KAISELNNYFP-NRNAGLIKPGYEDFVFISRFGKNISRIMVFHIIKELAGMAG 238

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +  + + HT RHSFATHLL  G +LR+IQ +LGH  + TT+IYT+++
Sbjct: 239 IKKTISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHID 285


>gi|296157219|ref|ZP_06840055.1| tyrosine recombinase XerD [Burkholderia sp. Ch1-1]
 gi|295892555|gb|EFG72337.1| tyrosine recombinase XerD [Burkholderia sp. Ch1-1]
          Length = 311

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 88/296 (29%), Positives = 141/296 (47%), Gaps = 17/296 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E GLS+ TL +Y  D R F  +LA       ++ T    S  ++ A+ + R  QK  
Sbjct: 30  LWLEHGLSRNTLDAYRRDLRLFCEWLA--QSRNASLDTA---SEADLNAYSAAR--QKDK 82

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R LS  + +  +  +   T     + +R+ K+    P  L E Q   L+    + 
Sbjct: 83  STSANRRLSVFRRYYSWAVREHRTKIDPTVRIRSAKQPPRFPSTLTEAQVEALLGAPDVD 142

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           T      +  R+  +L L+Y  GLR++E ++L    +  ++  +R+ GKG K R++P   
Sbjct: 143 TP-----LGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKERLIPFGE 197

Query: 205 SVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
                I  Y  +  P  L       LF   R + +    F   I++     G+    + H
Sbjct: 198 EAHGWIERYLREARPVLLGARATDALFVTSRAEGMTRQQFWNIIKRHAAAAGVNAPLSPH 257

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           TLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++ Q HP
Sbjct: 258 TLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARER----LKSLHAQHHP 309


>gi|227875332|ref|ZP_03993474.1| tyrosine recombinase [Mobiluncus mulieris ATCC 35243]
 gi|227844237|gb|EEJ54404.1| tyrosine recombinase [Mobiluncus mulieris ATCC 35243]
          Length = 319

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 150/310 (48%), Gaps = 22/310 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK- 77
           Q++L  L +ERG S  T+ +Y+ D ++++ +L     +     T+ Q++  ++  F+   
Sbjct: 18  QDFLNYLSVERGASPHTIAAYQRDLQRYVAYLQILGRD-----TLAQVTEVDLEGFVRAL 72

Query: 78  ----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
                    +G  S++R L+  +S+ +YL      + S   N+ +  K   LPR L E  
Sbjct: 73  GDGFASFPPLGSTSVRRCLAAARSWHRYL----FDSGSLGANVASSVKPAKLPRRLPETL 128

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQ 191
           +L  ++ +L   S        R+ A+L  LY  G RISEA++L   +I    + + +R+ 
Sbjct: 129 SLEEMEALLAAASSPGDSNSLRDRALLEFLYASGARISEAMNLVLDDIDFETEPALVRLF 188

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQ 249
           GKG K RI  L     +A+  Y       L    Q    +F    GKP++       I+ 
Sbjct: 189 GKGRKERISMLGHQACQALQAYLVRVRPTLAEKGQSRGRVFLNTYGKPMSRQTAWAIIQA 248

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +   +      HTLRH FATHLL  G D+R +Q +LGH  ++TT+IYT V+ +     
Sbjct: 249 AAKRAQIDRPVHPHTLRHCFATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQ----M 304

Query: 310 MMEIYDQTHP 319
           ++E+Y   HP
Sbjct: 305 LLEVYASAHP 314


>gi|212550679|ref|YP_002308996.1| site-specific recombinase XerD [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548917|dbj|BAG83585.1| site-specific recombinase XerD [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 299

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 141/278 (50%), Gaps = 12/278 (4%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E+ LS  ++ +Y  D  + L +L    ++ + ++       ++++   +      I 
Sbjct: 14  LLLEKALSHNSVNAYMSDLEKLLKYLDSIGKDLLNVEL------SDLQKMFTTLCEMGIH 67

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            RS  R +SGIKSF  +L+     T +    + + K    LP  L   +  +++  + L 
Sbjct: 68  PRSQARIISGIKSFYYFLELEDQITNNPTEYLESPKVGRKLPEFLTVNEINSIIATIDL- 126

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
               +K    RN AI+  LY CGLRISE + L+  +   D+  L+I GKG+K RIVP+  
Sbjct: 127 ----SKPNGQRNRAIIETLYSCGLRISELVKLSFSDFFPDEGFLKINGKGNKQRIVPISN 182

Query: 205 SVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           S  K I  Y  D     +    +  +F   RG  L+  +    ++      G+  + + H
Sbjct: 183 SAIKEIQLYLIDRQRSSIEKEFENIIFLNRRGTRLSRVMVFYLVKGCTVQAGIKKNVSPH 242

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T RHSFATHLL  G +LR+IQ++LGH  ++TT+IYT++
Sbjct: 243 TFRHSFATHLLEGGANLRAIQAMLGHENITTTEIYTHL 280


>gi|332976670|gb|EGK13510.1| integrase/recombinase XerD [Psychrobacter sp. 1501(2011)]
          Length = 312

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 147/297 (49%), Gaps = 22/297 (7%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           + RGLS  T  +Y  D +           E    + +     T++   ++    Q    R
Sbjct: 32  LARGLSTRTRNAYVRDLKHC---------ETTNPKALTLWDDTDVMQCLTTLNKQGKTPR 82

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           +  R LS ++ F  ++   +   ++    ++  K   SLP+ L+E          LL   
Sbjct: 83  TQARMLSSLRQFYLWMVGNERREDNPCERIKTPKIGRSLPKDLSENDV-----ESLLSAP 137

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
             +  +  R+ A+L +LY CGLR+SE ++L+ + +  +   L+I GKG+K R+VPL    
Sbjct: 138 DTSTALGLRDKAMLEVLYACGLRVSELMNLSLEQVNLNAGWLQITGKGNKTRLVPLGEYA 197

Query: 207 RKAILEYYDLCPFDLNLNIQ----LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            +A+ +Y      +L  +++      +F   +G  +    F   I++  +  G+    + 
Sbjct: 198 SEALDDYLSHARGELVAHLKSGNCQAVFLTTQGGYMTRQNFWYMIKKYAKQAGIESDLSP 257

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HTLRH+FATHLL++G DLRS+Q +LGH  LSTTQIYT+V +      + ++++  HP
Sbjct: 258 HTLRHAFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHVATAR----LQQLHEAHHP 310


>gi|313638152|gb|EFS03409.1| tyrosine recombinase XerC [Listeria seeligeri FSL S4-171]
          Length = 300

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 152/309 (49%), Gaps = 21/309 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q +L  L  ER  S+ T  +YE D   F  FL    E+ IT     Q+++ ++R ++
Sbjct: 6   KWEQLFLDYLHSERNYSENTSTAYENDLIDFRRFL---NEQAIT--EYSQVTFLDVRIYL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++ + +     ++ R +S ++SF  +L +  + TE+    + + K    LP+    ++  
Sbjct: 61  TELKQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEME 120

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L    +++  +ET  +  R+  +L +LYG G+R+SE   +   +I      + I+GKG+
Sbjct: 121 ALFQ--VVYEDNET--LTLRDRVLLEVLYGTGIRVSECAGILLTDIDKTYQAILIRGKGN 176

Query: 196 KIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           K R VP       AI +Y D     +  F+        L     G+PL     +  + ++
Sbjct: 177 KERYVPFGAYAEDAITDYLDSRIELMKHFN---KTHDSLLINHYGEPLTTRGIRYCLTKI 233

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                L      H LRH+FAT LL+NG D+R++Q +LGH  LS+TQIYT+V  ++    +
Sbjct: 234 ISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----L 289

Query: 311 MEIYDQTHP 319
              Y + HP
Sbjct: 290 KSTYMKHHP 298


>gi|222151085|ref|YP_002560239.1| tyrosine recombinase XerC protein [Macrococcus caseolyticus
           JCSC5402]
 gi|222120208|dbj|BAH17543.1| tyrosine recombinase XerC protein [Macrococcus caseolyticus
           JCSC5402]
          Length = 290

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 142/285 (49%), Gaps = 19/285 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L  L+ ER  S  T+ +Y+ D  QF+ FL    +E++  +T     Y + R ++  +
Sbjct: 7   QRFLTYLKNERNFSDHTVTAYKNDVLQFIAFLE---QEQLDFRT---FEYRDARNYLVSQ 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN-ILNMRNLKKSNSLPRALNEKQALTL 137
             + +   ++ R +S ++SF  +L       ESN  + + + K+   LP    EK+   L
Sbjct: 61  YNKGLERTTVSRRISALRSFYGFLYD---GDESNPFVQLVHPKQKKYLPEFFYEKEMTLL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            +++ +     +K    R+  IL +LY  G+R+SE + L          T+++ GKG K 
Sbjct: 118 FNSIDM-----SKPFAVRDKFILEMLYATGMRVSEFIELKSDAFDLGLMTVKVMGKGRKE 172

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RI+P      +++L+Y D   F  ++ I    L    RG PL        +  L +    
Sbjct: 173 RIIPYGAYAHRSLLDYMD---FRNSMTITHDYLLINQRGGPLTARGLTYILDMLIKRSSA 229

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                 H LRH+FATHLL+NG DLR++Q +LGH  LSTT  YT++
Sbjct: 230 DGHIHPHKLRHTFATHLLNNGADLRTVQELLGHVNLSTTSKYTHI 274


>gi|320107746|ref|YP_004183336.1| integrase family protein [Terriglobus saanensis SP1PR4]
 gi|319926267|gb|ADV83342.1| integrase family protein [Terriglobus saanensis SP1PR4]
          Length = 319

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 149/319 (46%), Gaps = 35/319 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L  ERG+S  TL++Y   TR+   F AF  +       ++Q+ +  IR++++   
Sbjct: 10  SFLAMLRDERGVSAHTLRAY---TRELNDFTAFLADLLGNEAEVKQVEHLHIRSYLAVLY 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +   S  R+L+ ++S+ K+L K     ++  L +   K    LPR  + ++   ++D
Sbjct: 67  DRGLSRASAARALAAVRSWFKWLAKEGKVQQNPALLVSTPKLPKHLPRVPSAEEVNRVLD 126

Query: 140 NV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++           W + R+  I  LLYGCG+R SE + +    I      + + GKG K 
Sbjct: 127 SIEQTGKKDESASWPE-RDRVIWELLYGCGIRNSELVGIDLSAIDWKNDAILVLGKGRKE 185

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF-------------- 243
           R VPL  +   A+  Y            +  L    +GK ++ G                
Sbjct: 186 RYVPLGDAANSAMRAYMP--------QREAKLQAAGKGKWMHSGPLLINLVARGDCRLTT 237

Query: 244 ---QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               R ++ +    GLP     HTLRH+F THLL  G DLR+IQ +LGH RLSTTQ YT 
Sbjct: 238 RSVGRIVKAIAVNRGLPADVHPHTLRHAFGTHLLEEGADLRAIQEMLGHERLSTTQRYTQ 297

Query: 301 VNSKNGGDWMMEIYDQTHP 319
           +        +  +Y+QTHP
Sbjct: 298 LTVTQ----VQTVYEQTHP 312


>gi|294674799|ref|YP_003575415.1| tyrosine recombinase XerC [Prevotella ruminicola 23]
 gi|294473941|gb|ADE83330.1| tyrosine recombinase XerC [Prevotella ruminicola 23]
          Length = 292

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 153/303 (50%), Gaps = 21/303 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L  ER  S LT+Q+YE   R F  ++ F  +E     +I  +    IR ++     
Sbjct: 5   FLDYLRYERNTSPLTVQTYEESLRDFESYVTFRDKE----LSISSVDTDLIRDWMESLMD 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     ++ + LS ++SF ++  KR++        +   KKS  LP+ L E +   L+D 
Sbjct: 61  KGNSASTINKKLSALRSFYRFALKRQLVKTDPAHAVIGPKKSKPLPQFLREGEMDRLIDG 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +   +S    + + R   IL L Y  GLR +E +SL  +++  D + L++ GK +K RIV
Sbjct: 121 IEWDSS----FNNVRARTILLLFYEAGLRRAELVSLNDKDVDFDAAQLKVTGKRNKQRIV 176

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG-VFQRYIRQLRRYLGLPLS 259
           P    + +A L+ Y     +        LF   +G+ ++   V+Q     +++YL +  S
Sbjct: 177 PFGAELAEA-LKQYQTARNEQFGETGGALFLSDKGQRISDSQVYQ----IVKKYLSMVTS 231

Query: 260 ---TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FAT +L+NG  L +I+S+LGH  +STT+IYT+   +     +  IY +
Sbjct: 232 LKKRSPHVLRHTFATAMLNNGAGLETIKSLLGHASVSTTEIYTHTTFEQ----LKRIYKE 287

Query: 317 THP 319
            HP
Sbjct: 288 AHP 290


>gi|15892414|ref|NP_360128.1| site-specific tyrosine recombinase XerD [Rickettsia conorii str.
           Malish 7]
 gi|34222952|sp|Q92IC9|XERD_RICCN RecName: Full=Tyrosine recombinase xerD
 gi|15619566|gb|AAL03029.1| integrase/recombinase [Rickettsia conorii str. Malish 7]
          Length = 306

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 151/309 (48%), Gaps = 50/309 (16%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L  ER LSK ++ SY+ D   F  +LA +   ++ I T        IR +I    +
Sbjct: 7   FLEMLLAERALSKNSILSYKRDLFDFQNYLAKHKLSELNITT------ENIRDWIEYLAS 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS+ R +S IKS+ ++L     T  + +LN+   K  N LP  L+  Q    + +
Sbjct: 61  NDLQARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIAQ----IKS 116

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-------LRIQGK 193
           +L H S +      R +A+++LLY  GLR+SE +SL   +I+ ++++         + GK
Sbjct: 117 LLEHCSQDNSPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNKTSKGEVRKIFSVLGK 176

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI---RGKPLN----------P 240
           G+K R++ +      +I +Y  +              RG+   + KP N           
Sbjct: 177 GNKERVIVINEQAVISIAKYLTI--------------RGVFVNKAKPRNLIYLFPSSALA 222

Query: 241 GVFQR-----YIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G   R      ++    Y GL P   + H LRHSFA+HLL  G DLR IQ +LGH  +ST
Sbjct: 223 GYMTRQNFAILLKSAALYAGLNPEYISPHILRHSFASHLLEGGADLRVIQELLGHADIST 282

Query: 295 TQIYTNVNS 303
           TQIYT++ +
Sbjct: 283 TQIYTHLQT 291


>gi|126666597|ref|ZP_01737575.1| Tyrosine recombinase XerC [Marinobacter sp. ELB17]
 gi|126628985|gb|EAZ99604.1| Tyrosine recombinase XerC [Marinobacter sp. ELB17]
          Length = 324

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 153/313 (48%), Gaps = 20/313 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF--------YTEEKITIQTIRQLSYTEI 71
            ++++L  E+ LS LT + Y+ D  +   +L          +++E   I + R L+  +I
Sbjct: 19  GFIRHLASEKRLSPLTCEHYQRDLLRLQRWLQEGYQEYSLNHSQEHSEI-SWRSLNSHDI 77

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           R +++      +  RS+ R LS I+ F  YL +  +   S    +R  K    LP   + 
Sbjct: 78  RRYVAHLSRASLNGRSIARHLSAIRRFYHYLLREGLVDNSPAEAIRAPKSGRRLPVVADV 137

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            Q   L+D      +     ++ R+  I  LLY  GLR++E  +L    +    + +++ 
Sbjct: 138 DQLTHLLD------AQADDPLELRDVCIFELLYSAGLRLAEVAALDLGTVELAAAQVKVT 191

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG+K R++P+      A+  +  + P  L    Q  LF   RG  L+    Q  + +  
Sbjct: 192 GKGNKQRVLPVGRPALAALQAWLAVRP-GLAGAGQQALFVSRRGDRLSHRSIQARLARWG 250

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G       H LRHSFA+HLL + GDLR++Q +LGH  ++TTQ+YT+++ ++    + 
Sbjct: 251 LVKGADQKLHPHMLRHSFASHLLESSGDLRAVQELLGHADIATTQVYTHLDFQH----LA 306

Query: 312 EIYDQTHPSITQK 324
            +YDQ+HP   ++
Sbjct: 307 SVYDQSHPRAKRR 319


>gi|86283512|gb|ABC92575.1| tyrosine site-specific integrase/recombinase protein [Rhizobium
           etli CFN 42]
          Length = 383

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 97/320 (30%), Positives = 152/320 (47%), Gaps = 26/320 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR--QLSYTEIRAFIS 76
           +++L+ +  ERG +  TLQSYE D      FL          ++IR  + +  ++ A+++
Sbjct: 76  ESFLEMMSAERGAAANTLQSYERDLDDVRSFL--------NGRSIRLTEAASADLAAYLA 127

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               Q     S  R L+ ++ F K+L    + T+     +   KK   LP+ +  ++   
Sbjct: 128 SLARQGFKPSSQARRLAAMRQFYKFLYAEGLRTDDPTGVLDAPKKGRPLPKTMGVEEVGR 187

Query: 137 LVDNVLLHTSHETKWIDARNS--AILYLLYGCGLRISEALSLTPQNIMDDQST-LRIQGK 193
           L+                R    A+L LLY  G+R+SE +SL P  ++D +   L I+GK
Sbjct: 188 LLSQAQTEADDPAPGQLQRRRMLALLELLYATGMRVSELVSL-PARVLDQEGRFLMIRGK 246

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNP-GVFQRYI 247
           G+K R+VPL  S   A+  Y  L         + P     LF     +   P  VF R +
Sbjct: 247 GNKERLVPLSHSAIAALKSYGRLL-AADAAAAKEPQESPWLFPAASKEGYLPRQVFARDL 305

Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           + L    GL P   + H +RH+FA+HLL+NG DLR +Q +LGH  +STTQIYT+V  +  
Sbjct: 306 KNLAIRAGLTPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER- 364

Query: 307 GDWMMEIYDQTHPSITQKDK 326
              + ++    HP   Q  K
Sbjct: 365 ---LQQLVQMHHPLAKQAKK 381


>gi|220935295|ref|YP_002514194.1| tyrosine recombinase XerD [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996605|gb|ACL73207.1| tyrosine recombinase XerD [Thioalkalivibrio sp. HL-EbGR7]
          Length = 308

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 95/310 (30%), Positives = 144/310 (46%), Gaps = 35/310 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  +  E GLS  TL +Y  D    L+ LA +   +   + + Q    ++ A++S R  
Sbjct: 21  FLDAIWAEHGLSDHTLAAYRAD----LMALARWLGPRG--KRVEQADRGDLLAYLSHRVA 74

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                RS  R LS ++ F ++  +     +     + + K    LP  L+E    T V+ 
Sbjct: 75  GGARPRSTARLLSSLRRFYRHQVRDGRRQDDPTAQIDSPKLGRPLPDTLSE----TDVEA 130

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +L     +T  +  R+ A+L LLY  GLR+SE + L    +      +R  GKG K R+V
Sbjct: 131 LLASPDTDTD-LGLRDRAMLELLYATGLRVSELVGLRVDQVNLRHGVVRTLGKGSKERLV 189

Query: 201 PL-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           PL           L + R A+L     C           LF   RG  +    F   +R+
Sbjct: 190 PLGEEASVWVERYLGAARPALLAGQGACD---------DLFVTRRGGAMTRQAFWHLLRR 240

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        
Sbjct: 241 YAAQAGIHKHLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR---- 296

Query: 310 MMEIYDQTHP 319
           + E++ + HP
Sbjct: 297 LKELHGKHHP 306


>gi|227833388|ref|YP_002835095.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975]
 gi|227454404|gb|ACP33157.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975]
          Length = 303

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 157/315 (49%), Gaps = 30/315 (9%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTR----QFLIFLAFYTEEKITIQTIRQ 65
           V  +L +  +++ +   I RG S+ T++ Y  D R    +   F AF      T+ ++R+
Sbjct: 12  VGGQLEEAIEDFAEYQRIVRGRSEATVRGYCSDLRLLAPEVPEFAAF------TLNSLRE 65

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNS 124
                   +++    +     +L R  + +++F  +   R+   ES++   +   K    
Sbjct: 66  --------WLAHAVAEGKSRSTLARRTAAVRAFSTW-AAREGYLESDVAQRLATPKVGKH 116

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  ++   A  L+ N +  ++ E  ++  R+SA+L  LY  G+R++E + L   +I   
Sbjct: 117 LPTVMSPTAAGELMGNAV--STDEVHFL--RDSAMLEFLYATGVRVAELVGLDVGDIDLS 172

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           + T R+ GKG+K R+VP   +   A+  +      +L    +  +F G RG  ++    +
Sbjct: 173 RRTARVTGKGNKQRVVPFGDAAHDALCAWLKTGRPELAGETE-AVFVGTRGGRIDARQVR 231

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R + +  +  G P   T H LRHS ATHLL  G DLR +Q +LGH  L TTQ+YT+V+++
Sbjct: 232 RVVERAAQVTGAP-GLTPHGLRHSAATHLLEGGADLRIVQELLGHSSLQTTQVYTHVSAQ 290

Query: 305 NGGDWMMEIYDQTHP 319
                + ++Y ++HP
Sbjct: 291 R----LKDVYARSHP 301


>gi|15895336|ref|NP_348685.1| XerD family integrase/recombinase [Clostridium acetobutylicum ATCC
           824]
 gi|34222991|sp|Q97HE5|XERD_CLOAB RecName: Full=Tyrosine recombinase xerD
 gi|15025053|gb|AAK80025.1|AE007709_9 Integrase/recombinase XerD family [Clostridium acetobutylicum ATCC
           824]
 gi|325509481|gb|ADZ21117.1| Integrase/recombinase XerD family [Clostridium acetobutylicum EA
           2018]
          Length = 292

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 153/292 (52%), Gaps = 15/292 (5%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           ++ LS  T+ +Y  D ++F  FL    +EK   + +R++    I +++   +     + S
Sbjct: 14  KKNLSLNTIDAYRRDIKKFHEFL----DEKG--EKLREVDVITIMSYVQYLQKNGRANSS 67

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           + R++  I++F KYL+ + I  ++ +      K   + P  L  ++    V+ +L+    
Sbjct: 68  IVRNIVSIRNFFKYLEIKGIMDDNPVTQYEMPKIRRNFPDILTIEE----VEKLLMGPDG 123

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
            T     R+ A+L ++Y  G++++E L+LT  +I    S ++ +G  +K RI+P+     
Sbjct: 124 NTDK-GIRDKAMLEIMYATGMKVTELLNLTIYDINLKLSYIKCRGIKNKERIIPMGSYAV 182

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           K  LE Y      LN+     LF  ++G  +    F + I+Q  +  G+     A+TLRH
Sbjct: 183 KC-LEIYLKVRTKLNVQNIDYLFFNLQGDKMTRQGFWKIIKQYAQESGIKKKINAYTLRH 241

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           SFA HLL NG D+++IQ +LGH  ++TTQIY+ +  K     + E+Y +THP
Sbjct: 242 SFAVHLLQNGADIKTIQELLGHSDMATTQIYSGMYRKT---RIAEVYKKTHP 290


>gi|218680623|ref|ZP_03528520.1| site-specific tyrosine recombinase XerD [Rhizobium etli CIAT 894]
          Length = 311

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 95/299 (31%), Positives = 149/299 (49%), Gaps = 30/299 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L+ +  ERG +  TLQSYE D      FL    E  I +    + +  ++ A+++  
Sbjct: 10  ESFLEMMSAERGAAANTLQSYERDLDDVSAFL---KERGIRLT---EAASADLAAYLASL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S  R L+ ++ F K+L    + T+     +   KK   LP+ +  ++   L+
Sbjct: 64  ARKGFKPSSQARRLAAMRQFYKFLYAEGLRTDDPTGILDAPKKGRPLPKTMGVEEVGKLL 123

Query: 139 DNVLLHTSHETKWIDARNSAI--------LYLLYGCGLRISEALSLTPQNIMDDQST-LR 189
                    ET+  DA    +        L LLY  G+R+SE +SL P  ++D +   L 
Sbjct: 124 SQA------ETEAQDAAPGQLQRLRMLALLELLYATGMRVSELVSL-PARVLDQEGRFLM 176

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNP-GVF 243
           I+GKG+K R+VPL  S   A+  Y  L   + N  ++ P     LF     +   P  VF
Sbjct: 177 IRGKGNKERLVPLSQSAISALKSYGRLLAAE-NAAVKDPQESPWLFPAASKEGYLPRQVF 235

Query: 244 QRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            R ++ L    GL P   + H +RH+FA+HLL+NG DLR +Q +LGH  +STTQIYT+V
Sbjct: 236 ARDLKNLAIRAGLTPSMISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHV 294


>gi|34580584|ref|ZP_00142064.1| integrase/recombinase [Rickettsia sibirica 246]
 gi|229586627|ref|YP_002845128.1| site-specific tyrosine recombinase XerD [Rickettsia africae ESF-5]
 gi|28261969|gb|EAA25473.1| integrase/recombinase [Rickettsia sibirica 246]
 gi|228021677|gb|ACP53385.1| Tyrosine recombinase XerD [Rickettsia africae ESF-5]
          Length = 306

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 95/311 (30%), Positives = 152/311 (48%), Gaps = 50/311 (16%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L  ER LSK ++ SY+ D   F  +LA +   ++ I T        IR +I    +
Sbjct: 7   FLEMLLAERALSKNSILSYKRDLFDFQNYLAKHKLSELNITT------ENIRDWIEYLAS 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS+ R +S IKS+ ++L     T  + +LN+   K  N LP  L+  Q    + +
Sbjct: 61  NDLQARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIAQ----IKS 116

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-------LRIQGK 193
           +L H S +      R +A+++LLY  GLR+SE +SL   +I+ ++++         + GK
Sbjct: 117 LLEHCSQDNSPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNKTSKGEVRKIFSVLGK 176

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI---RGKPLN----------P 240
           G+K R++ +      +I +Y  +              RG+   + KP N           
Sbjct: 177 GNKERVIVINEQAVISIAKYLAI--------------RGVFVNKAKPRNLIYLFPSSALA 222

Query: 241 GVFQR-----YIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G   R      ++    Y GL P   + H LRHSFA+HLL  G DLR IQ +LGH  +ST
Sbjct: 223 GYMTRQNFAILLKSAALYAGLNPEYISPHILRHSFASHLLEGGADLRVIQELLGHADIST 282

Query: 295 TQIYTNVNSKN 305
           TQIYT++ + +
Sbjct: 283 TQIYTHLQTNH 293


>gi|149199225|ref|ZP_01876263.1| tyrosine recombinase [Lentisphaera araneosa HTCC2155]
 gi|149137650|gb|EDM26065.1| tyrosine recombinase [Lentisphaera araneosa HTCC2155]
          Length = 292

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 87/278 (31%), Positives = 140/278 (50%), Gaps = 11/278 (3%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +ERGLS+ T+ +Y  D   F      Y E+K+  +    ++  ++  +    + +++ 
Sbjct: 9   LSLERGLSQNTIDAYINDLNDF----TAYQEQKLN-KEYPSINKDDLLNYCEDCKNRELN 63

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           D ++ R L  +K F ++L + KI  +    ++ + + S  LP  L    +L  ++  LLH
Sbjct: 64  DSTISRRLVTLKIFFRFLYQEKIVPKDVGEHLESARLSRLLPDYL----SLPEIER-LLH 118

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
              E   +  RN  I+ LLY CGLRISE   L   +   +   LR++GKG K R VP   
Sbjct: 119 IYDEAIPLQFRNKFIIELLYSCGLRISELCGLRTDSFNYESGFLRVKGKGSKERSVPFGT 178

Query: 205 SVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
            V     +Y  ++ P     N    L     G+PL      +++++      +  +   H
Sbjct: 179 QVASMSRQYIKNIRPQLCKKNNPPELIVSNNGRPLTRSRVWQFLKEAAIKAEINKNLHPH 238

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            LRHSFA+HLLSN  DLR IQ +LGH  ++TT+IYT+V
Sbjct: 239 VLRHSFASHLLSNNADLRIIQELLGHADIATTEIYTHV 276


>gi|227510442|ref|ZP_03940491.1| site-specific recombinase XerD [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227190094|gb|EEI70161.1| site-specific recombinase XerD [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 331

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 158/318 (49%), Gaps = 23/318 (7%)

Query: 15  LKERQN---WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           + +R+N   +L+ L  ER  S+ T+Q+Y+ D  +FL FL   +++  ++  I  L   ++
Sbjct: 22  MDDRKNMDWFLKYLRSERHYSEDTVQAYQNDLTEFLKFLNETSKDHTSLIKIDSL---DV 78

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRAL- 129
            ++++    +K    S+ + +S ++SF  +L K ++  ++N     +LK  N  LPR   
Sbjct: 79  ESYLTGLYDKKYARNSIAQKVSALRSFYSFLIKNEVI-KNNPFEYVHLKNQNRRLPRFFY 137

Query: 130 -NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
             E QAL              + +  RNSAIL + Y  G+R+SE +++  ++I  +   +
Sbjct: 138 PTEMQAL------FSAAKKGERKLAFRNSAILEVFYSTGIRVSEGVTIQLKDIDLENQLI 191

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQR 245
            + GKG K R +P     ++A+  Y       L          LF    GKPL     + 
Sbjct: 192 LVTGKGRKQRYLPFGKPAKQAVENYLKESREPLMTKYHQKHDYLFINHFGKPLTSRGIEY 251

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +  + +   L  +   H LRH+FAT +L+NG D+RS+Q +LGH  LSTTQIYT+V   +
Sbjct: 252 ILDGIIKQSSLTTNIHPHMLRHTFATEMLNNGADMRSVQELLGHSSLSTTQIYTHVTKSH 311

Query: 306 GGDWMMEIYDQTHPSITQ 323
               +M  Y +  P   Q
Sbjct: 312 ----LMNDYQKYFPRNNQ 325


>gi|325143762|gb|EGC66079.1| tyrosine recombinase XerC [Neisseria meningitidis M01-240013]
          Length = 305

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 148/308 (48%), Gaps = 17/308 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI--TIQTIRQLSYTEIRAFISKR 78
           +L+N+ +  G S+ T+ +Y  D  +    LA    E      Q + Q  +T     +S+R
Sbjct: 13  YLENI-VREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQGLSQRDFTAALRRLSQR 71

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +  R+L R LS  + +  +L +R +       +++  K+   +P+AL ++    ++
Sbjct: 72  ---GLNARTLARKLSSWRQYCVWLVERGLMRADPTADIKPPKQPERVPKALPQEWLNRML 128

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D  +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GKG K R
Sbjct: 129 DLPVDGGDP----LAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQR 184

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            VPL     +A+  Y    P     +    LF G  G  L+    Q+ + Q     G   
Sbjct: 185 QVPLTGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGR 241

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +YD+ H
Sbjct: 242 HVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAH 297

Query: 319 PSITQKDK 326
           P   ++D+
Sbjct: 298 PRAKRQDE 305


>gi|261867252|ref|YP_003255174.1| site-specific tyrosine recombinase XerC [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|293391244|ref|ZP_06635578.1| tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|261412584|gb|ACX81955.1| tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|290951778|gb|EFE01897.1| tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 296

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 151/308 (49%), Gaps = 20/308 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q++   L +ER +S  TL +Y+   RQ     A      IT    +Q++ + +R  +++ 
Sbjct: 6   QHYFTYLRVERQVSPHTLSNYQ---RQLARVTAILQGAGIT--QWQQVTASVVRYVVAQS 60

Query: 79  RTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             Q  + ++SL   LS ++ FL YL ++     +    +   K++  LP+ ++  Q   L
Sbjct: 61  SKQDGLKEKSLALRLSALRRFLTYLVQQGELKVNPATGISAPKQAKHLPKNIDTDQVQLL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           + N     S E   ID R+ AI+ LLY  GLR+SE   L   +I      +R+ GKG+K 
Sbjct: 121 LAN----DSKEP--IDIRDRAIIELLYSSGLRLSELQGLNLNSIHLRSREVRVIGKGNKE 174

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP       AI ++  +   F+   N    LF    G  ++    Q  +       GL
Sbjct: 175 RVVPFGRYASHAIQQWLKVRLLFNPKDN---ALFVSQLGNRMSHRAIQMRLETWGIRQGL 231

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    +  +YD 
Sbjct: 232 NSHLNPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAAVYDA 287

Query: 317 THPSITQK 324
            HP   +K
Sbjct: 288 AHPRAKRK 295


>gi|163848038|ref|YP_001636082.1| integrase family protein [Chloroflexus aurantiacus J-10-fl]
 gi|222525926|ref|YP_002570397.1| integrase family protein [Chloroflexus sp. Y-400-fl]
 gi|163669327|gb|ABY35693.1| integrase family protein [Chloroflexus aurantiacus J-10-fl]
 gi|222449805|gb|ACM54071.1| integrase family protein [Chloroflexus sp. Y-400-fl]
          Length = 286

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 141/292 (48%), Gaps = 19/292 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  +  ER +S  T  +Y  D  Q   FL      +  I+    +    + AF+   + 
Sbjct: 8   FLAYIADERKMSANTTIAYRTDLDQLCAFL-----HERGIEHWSDVDSETMMAFVINLKE 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           ++  + ++ R L+ IKSF  +LK+R +        +   +     PRA+++ Q   L++ 
Sbjct: 63  KRYANSTMARRLAAIKSFFSFLKERNVIHHDPTDQLDAPRVDRFPPRAISQHQVDELLEV 122

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            L + + E      R+ A+L +LY  G+R+SE ++L   ++  D  T+R +G+  + R +
Sbjct: 123 PLQNGTPEG----IRDKAMLEVLYATGMRVSELVALNVDDVAFDHRTVRCRGRQGRERTI 178

Query: 201 PLLPSVRKAILEYYDLC-PFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYL 254
           PL      A+ EY D+  P    L  Q P     LF   RGK L    F   ++     +
Sbjct: 179 PLSDPALTALEEYLDIARP---QLARQAPDDPEALFLNHRGKRLTRQGFWLILKTYAEQV 235

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           G+    T H LRHSFA H L NG DLR +Q  LGH  ++TTQ+Y ++  ++ 
Sbjct: 236 GMH-DLTPHMLRHSFAAHQLRNGVDLRELQERLGHASIATTQMYAHLAEESS 286


>gi|54023975|ref|YP_118217.1| site-specific tyrosine recombinase XerD [Nocardia farcinica IFM
           10152]
 gi|54015483|dbj|BAD56853.1| putative recombinase [Nocardia farcinica IFM 10152]
          Length = 316

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 149/322 (46%), Gaps = 26/322 (8%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +E   +L +L +ERG ++ TL +Y  D  ++  FL   TE  I    + Q+   ++ A
Sbjct: 2   LAREIDAYLDHLAVERGAARNTLGAYRRDLGRYRDFL---TERGI--GGLEQVREADVAA 56

Query: 74  FISKRRTQKIGDR------SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
           F    R+   GD       S+ R+L  ++   ++     +T+      ++       LP+
Sbjct: 57  FTVALRSGG-GDHPPLAASSVARALIAVRGLHRFAAAEGMTSTDVAHAVKPPTPGRRLPK 115

Query: 128 ALNEKQALTLVDNVLLHTSHE--TKWIDA-----RNSAILYLLYGCGLRISEALSLTPQN 180
           AL   Q L L++      + +  T   D      R+ A+L LLY  G RISE + L   +
Sbjct: 116 ALPYDQVLRLLEAAGGGPAEDGDTAAADGGPRGLRDRALLELLYSTGARISEMVGLDVDD 175

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PF--DLNLNIQLPLFRGIRGKP 237
           +   +  + ++GKG K RIVP+      A+  Y     P            LF  +RG  
Sbjct: 176 LDTTERAVVLRGKGGKQRIVPIGRPALAAVDAYLVRGRPVLAAAGKGTGGALFLNVRGGR 235

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+     + ++      G+  + + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQI
Sbjct: 236 LSRQSAWQVLQTAAERAGIGAAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQI 295

Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319
           YT V        + E++   HP
Sbjct: 296 YTLVTVST----LREVWATAHP 313


>gi|116492727|ref|YP_804462.1| tyrosine recombinase XerC subunit [Pediococcus pentosaceus ATCC
           25745]
 gi|122265809|sp|Q03FK2|XERC_PEDPA RecName: Full=Tyrosine recombinase xerC
 gi|116102877|gb|ABJ68020.1| tyrosine recombinase XerC subunit [Pediococcus pentosaceus ATCC
           25745]
          Length = 301

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 94/285 (32%), Positives = 145/285 (50%), Gaps = 17/285 (5%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           Q L +ER  S+ T+ +Y  D   F  FL   T +K  +  + +    ++  ++S    + 
Sbjct: 9   QYLTVERQYSEKTVTAYLEDIDAFQKFLT-DTGDKTDLLLVDRF---DVNVYMSYLFDRH 64

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK-SNSLPRALNEKQALTLVDNV 141
           +   S+ R +S ++SF ++L K  +  + N   +  LKK S+ LP    EK+      N+
Sbjct: 65  LARTSISRKVSALRSFYRFLVKNDLV-DKNPFELVQLKKQSDKLPHFFYEKEM-----NM 118

Query: 142 LLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           L    ++ +     RN AIL +LYG G+R+SE  +L   +I     T+ + GKG+K R V
Sbjct: 119 LFEAVYQAEGAQKLRNIAILEVLYGTGMRVSECAALQWSDIDFSMQTILVLGKGNKERYV 178

Query: 201 PLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGL 256
           P     ++A+  Y   +  PF L+   Q   F  I    KP+     +  + Q+     L
Sbjct: 179 PFGRYAKEALQNYRKNEWEPF-LSKYKQTHNFVFINHYAKPITTTGIEYILNQVITASSL 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                 H LRHSFAT LL+NG DLR++Q +LGH  LSTTQIYT+V
Sbjct: 238 NGKIHPHMLRHSFATALLNNGADLRTVQELLGHSSLSTTQIYTHV 282


>gi|309379484|emb|CBX21850.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 334

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 145/306 (47%), Gaps = 13/306 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+N+ +  G S+ T+ +Y  D  +    LA    E       + LS  +  A + +   
Sbjct: 42  YLENI-VREGKSEHTVAAYRRDLEELFALLAQMPSE-AEGGVPQDLSRRDFTAALRRLSQ 99

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  R+L R LS  + +  +L KR +        +   K+   +P+AL ++    ++D 
Sbjct: 100 RGLNARTLARKLSSWRQYCAWLVKRGLMRTDPTAGISPPKQPQRIPKALPQEWLNRMLDL 159

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GKG K R V
Sbjct: 160 PV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQV 215

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           PL     +A+  Y    P     +    LF G  G  L+    Q+ + Q     G     
Sbjct: 216 PLTGKSAEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAINGDGRHV 272

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +YD+ HP 
Sbjct: 273 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAHPR 328

Query: 321 ITQKDK 326
             +++K
Sbjct: 329 AKRQEK 334


>gi|240170588|ref|ZP_04749247.1| site-specific tyrosine recombinase XerC [Mycobacterium kansasii
           ATCC 12478]
          Length = 302

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 137/296 (46%), Gaps = 12/296 (4%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L ++ G S  T ++Y  D R   +  AF  +    ++T   LS   +RA+++      + 
Sbjct: 16  LALQCGRSAHTRRAYLGDLR---LLFAFLADRGSALET---LSLPLLRAWLASASGAGVA 69

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +L R  S +K+F  +  +R + T      ++  K   +LP  L + QAL  +      
Sbjct: 70  RTTLARRTSAVKAFTAWAVRRGLLTGDPAARLQVPKAHRTLPAVLRQDQALAAM-TAAKS 128

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            + +   +  R+  I+ LLY  G+R+SE   L   ++      +R+ GKG+K R VP   
Sbjct: 129 GAEQGDPLALRDRLIVELLYATGIRVSELCGLDIDDVDTGHRVVRVLGKGNKQRTVPYGR 188

Query: 205 SVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              +A+  +  D  P  +       L  G RG+ L+    +  + Q    +        H
Sbjct: 189 PAAEALQAWLADGRPALVTAESGPALLLGARGRRLDARQARTVVHQTVAAVNGAPDIGPH 248

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V        +  ++DQ HP
Sbjct: 249 GLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVNR----LRAVHDQAHP 300


>gi|226306747|ref|YP_002766707.1| tyrosine recombinase XerD [Rhodococcus erythropolis PR4]
 gi|226185864|dbj|BAH33968.1| tyrosine recombinase XerD [Rhodococcus erythropolis PR4]
          Length = 307

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 148/316 (46%), Gaps = 23/316 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L ++  ++L +L +ERG ++ TL SY  D  ++  +L     +   I  +  ++  ++  
Sbjct: 2   LARQVDSYLDHLAVERGSARNTLLSYRRDLNRYAEYL-----DGRGIDDVAGVTENDVTE 56

Query: 74  FISKRRTQKIGDR----------SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           F++  R   +GD+          S  R+L  ++ F K+     +        ++      
Sbjct: 57  FVTHLR---LGDKDAGVLPLAASSAARTLIAVRGFHKFSAAEGLVGVDVARTVKPPTPGR 113

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            LP+AL     + L+D      + +    D R+ A+L LLY  G RI+EA+ L   +I  
Sbjct: 114 KLPKALPLDDVIALLDASGGGAAGDGPR-DLRDRALLELLYSTGARITEAIDLDVDDIDT 172

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           +  ++ ++GKG K RIVP+      A+  Y       L       LF   RG  L+    
Sbjct: 173 ETRSVLLKGKGGKQRIVPVGRPAIAAVDAYLVRGRPSLATRGVPALFLNARGGRLSRQSA 232

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            + ++      G+    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V  
Sbjct: 233 WQILQDAAASAGIKADVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTV 292

Query: 304 KNGGDWMMEIYDQTHP 319
                 + E++ Q HP
Sbjct: 293 TA----LREVWAQAHP 304


>gi|323527182|ref|YP_004229335.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1001]
 gi|323384184|gb|ADX56275.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1001]
          Length = 314

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 134/278 (48%), Gaps = 13/278 (4%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E GLS+ TL +Y  D R F  +LA     +    ++   S  ++ A+ + R  QK  
Sbjct: 33  LWLEHGLSRNTLDAYRRDLRLFSEWLA-----QTRSASLDTASEADLNAYSAAR--QKDK 85

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R LS  + +  +  +         L +R+ K+    P  L+E Q   L+    + 
Sbjct: 86  STSANRRLSVFRRYYGWAVREHRAKVDPTLRIRSAKQPPRFPSTLSEAQVEALLGAPDIE 145

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           T      +  R+  +L L+Y  GLR++E ++L    +  ++  +R+ GKG K R++P   
Sbjct: 146 TP-----LGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKERLIPFGE 200

Query: 205 SVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
                I  Y  D  P  L       LF   R + +    F   I++     G+    + H
Sbjct: 201 EAHGWIERYLRDARPALLGARAADALFVTNRAEGMTRQQFWNIIKRHAAAAGVHAPLSPH 260

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           TLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 261 TLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHV 298


>gi|308389967|gb|ADO32287.1| putative integrase/recombinase [Neisseria meningitidis alpha710]
 gi|325131510|gb|EGC54217.1| tyrosine recombinase XerC [Neisseria meningitidis M6190]
 gi|325139236|gb|EGC61782.1| tyrosine recombinase XerC [Neisseria meningitidis ES14902]
          Length = 305

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 147/306 (48%), Gaps = 13/306 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+N+ +  G S+ T+ +Y  D  +    LA    E       + LS  +  A + +   
Sbjct: 13  YLENI-VREGKSEHTVAAYRRDLEELFALLAQMPSEDAG-GVPQDLSRRDFTAALRRLSQ 70

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  R+L R LS  + +  +L +R +       +++  K+   +P+AL ++    ++D 
Sbjct: 71  RGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEWLNRMLDL 130

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GKG K R V
Sbjct: 131 PV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQV 186

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           PL     +A+  Y    P     +    LF G  G  L+    Q+ + Q     G     
Sbjct: 187 PLTGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHV 243

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +YD+ HP 
Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAHPR 299

Query: 321 ITQKDK 326
             ++D+
Sbjct: 300 AKRQDE 305


>gi|289434561|ref|YP_003464433.1| integrase/recombinase XerC [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170805|emb|CBH27347.1| integrase/recombinase XerC [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 300

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 151/309 (48%), Gaps = 21/309 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q +L  L  ER  S+ T  +YE D   F  FL    E+ IT     Q+++ ++R ++
Sbjct: 6   KWEQLFLDYLHSERNYSENTSTAYENDLIDFRRFL---NEQAIT--EYNQVTFLDVRIYL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++ + +     ++ R +S ++SF  +L +  + TE+    + + K    LP+    ++  
Sbjct: 61  TELKQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEME 120

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L    +++  +ET  +  R+  +L +LYG G+R+SE   +   +I      + I+GKG+
Sbjct: 121 ALFQ--VVYEDNET--LTLRDRVLLEVLYGTGIRVSECAGILLTDIDKTYQAILIRGKGN 176

Query: 196 KIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           K R VP       AI +Y D     +  F+        L     G PL     +  + ++
Sbjct: 177 KERYVPFGAYAEDAITDYLDSRIELMKHFN---KTHDSLLINHYGDPLTTRGIRYCLTKI 233

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                L      H LRH+FAT LL+NG D+R++Q +LGH  LS+TQIYT+V  ++    +
Sbjct: 234 ISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----L 289

Query: 311 MEIYDQTHP 319
              Y + HP
Sbjct: 290 KSTYMKHHP 298


>gi|296840755|ref|ZP_06863381.2| tyrosine recombinase XerC [Neisseria polysaccharea ATCC 43768]
 gi|296840030|gb|EFH23968.1| tyrosine recombinase XerC [Neisseria polysaccharea ATCC 43768]
          Length = 334

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 149/306 (48%), Gaps = 13/306 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+N+ +  G S+ T+ +Y  D  +    LA    E       + LS  +  A + +   
Sbjct: 42  YLENI-VREGKSEHTVAAYRRDLEELFALLAQMPSE-AEGGVPQDLSRRDFTAALRRLSQ 99

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  R+L R LS  + +  +L KR +       +++  K+   +P+AL+++    ++D 
Sbjct: 100 RGLNARTLARKLSSWRQYCAWLVKRGLLHTDPTADIKPPKQPERVPKALSQEWLNRMLDL 159

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GKG K R V
Sbjct: 160 PV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNVDDVYLDEAWVHVTGKGRKQRQV 215

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           PL     +A+  Y    P     +    LF G  G  L+    Q+ +       G     
Sbjct: 216 PLTGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLESWAVQNGDGRHI 272

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H +RHS+A+HLL +  D+R++Q +LGH  LSTTQIYT ++     D +  +YD+ HP 
Sbjct: 273 SPHMMRHSYASHLLQSSRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAHPR 328

Query: 321 ITQKDK 326
             ++D+
Sbjct: 329 AKRQDE 334


>gi|91215199|ref|ZP_01252171.1| putative site-specific recombinase [Psychroflexus torquis ATCC
           700755]
 gi|91186804|gb|EAS73175.1| putative site-specific recombinase [Psychroflexus torquis ATCC
           700755]
          Length = 296

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 155/304 (50%), Gaps = 23/304 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L+ L +E+  +KLT+ SY  D  QF +F+     E    + + +++Y  IR +I    
Sbjct: 6   SFLEYLLLEKKYAKLTIISYATDLAQFQVFIL----ETYDTREMSEVNYPMIRQWIVGFI 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +  +++ R LS +K+F K+L K ++   + ++  ++LK    LP+   E  ++  ++
Sbjct: 62  ELGLTHKTINRKLSTLKTFFKFLLKIQVIAVNPMVQHKSLK----LPKRQQEAFSVLELE 117

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            V  +   +  +   R+  I+ LLY  G+R  E + L   ++   Q  L+++GK +K R+
Sbjct: 118 KVSDYFE-DVTFEGLRDHLIIELLYATGMRRQELIDLQLSSLDLKQQQLKVRGKRNKERL 176

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           +PLL S+   I  Y          ++ LP    LF   +GK + P +  R +      + 
Sbjct: 177 IPLLDSISFLIERYLQ------ERSVLLPQGSQLFVTSKGKAIYPNLVYRVVHSYFEKVS 230

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL  G D+ +I+ +LGH  L++T++YT+ N K     + + + 
Sbjct: 231 TKKKLSPHLLRHAFATHLLDKGADISAIKDLLGHSSLASTEVYTHSNFKE----LSKAHQ 286

Query: 316 QTHP 319
             HP
Sbjct: 287 AAHP 290


>gi|325201493|gb|ADY96947.1| tyrosine recombinase XerC [Neisseria meningitidis M01-240149]
 gi|325207473|gb|ADZ02925.1| tyrosine recombinase XerC [Neisseria meningitidis NZ-05/33]
          Length = 305

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 148/308 (48%), Gaps = 17/308 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI--TIQTIRQLSYTEIRAFISKR 78
           +L+N+ +  G S  T+ +Y  D  +    LA    E      Q + Q  +T     +S+R
Sbjct: 13  YLENI-VREGKSGHTVAAYRRDLEELFALLAQMPSEDAGGVPQGLSQRDFTAALRRLSQR 71

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +  R+L R LS  + +  +L KR +       +++  K+   +P+AL ++    ++
Sbjct: 72  ---GLNARTLARKLSSWRQYCAWLVKRGLLHTDPTADIKPPKQPERVPKALPQEWLNRML 128

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D  +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GKG K R
Sbjct: 129 DLPV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQR 184

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            VPL+    +A+  Y  L     +      LF G  G  L+    Q+ + Q     G   
Sbjct: 185 QVPLVGKSVEALKNYLSLRQTASDGKA---LFTGRNGTRLSQRQIQKRLAQWAAQNGDGR 241

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +YD+ H
Sbjct: 242 HVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAH 297

Query: 319 PSITQKDK 326
           P   ++D+
Sbjct: 298 PRAKRQDE 305


>gi|269218465|ref|ZP_06162319.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269211576|gb|EEZ77916.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 255

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 82/240 (34%), Positives = 123/240 (51%), Gaps = 20/240 (8%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S+ RS++ ++SF  +  +   T  +   ++R  K  + LP+A++       +D+V    +
Sbjct: 25  SVARSMAAVRSFHAFAFEEGRTGANPAADVRPPKIPSRLPKAMD-------IDDVAALIA 77

Query: 147 HETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
                      R+ A+L +LYG G RISEA+ L+  ++    ++ R+ GKG K R+VPL 
Sbjct: 78  AGGAGEGPAPLRDRALLEVLYGTGARISEAVGLSVDDVDLAGASARLFGKGRKERVVPLG 137

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
               +AI  Y  L     +L    P    LF   RG+PL+       I+       L + 
Sbjct: 138 GYAVEAIDAY--LVRARPSLASSGPGTPSLFLNTRGRPLSRQSAWAIIQNAAERAKLSVH 195

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRHSFATHLL  G D+R +Q +LGH  LSTTQIYT V+     D + E+Y   HP
Sbjct: 196 VSPHTLRHSFATHLLQGGADIRVVQELLGHSSLSTTQIYTMVSR----DTVREVYALAHP 251


>gi|313669090|ref|YP_004049374.1| integrase/recombinase [Neisseria lactamica ST-640]
 gi|313006552|emb|CBN88016.1| putative integrase/recombinase [Neisseria lactamica 020-06]
          Length = 302

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 146/306 (47%), Gaps = 16/306 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+N+ +  G S+ T+ +Y  D  + L  +    E  +     + LS  +  A + +   
Sbjct: 13  YLENI-VREGKSEHTVAAYRRDLEELLAQMPSEAEGGVP----QDLSRRDFTAALRRLSQ 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  R+L R LS  + +  +L KR +        +   K+   +P+AL ++    ++D 
Sbjct: 68  RGLNARTLARKLSSWRQYCAWLVKRGLMRADPTAGISPPKQPQRIPKALPQEWLNRMLDL 127

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GKG K R V
Sbjct: 128 PVDGGDP----LAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQV 183

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           PL     +A+  Y    P     +    LF G  G  L+    Q+ + Q     G     
Sbjct: 184 PLTGKSAEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAINGDGRHV 240

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +YD+ HP 
Sbjct: 241 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAHPR 296

Query: 321 ITQKDK 326
             +++K
Sbjct: 297 AKRQEK 302


>gi|312972864|ref|ZP_07787037.1| tyrosine recombinase XerD [Escherichia coli 1827-70]
 gi|310332806|gb|EFQ00020.1| tyrosine recombinase XerD [Escherichia coli 1827-70]
          Length = 283

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 88/294 (29%), Positives = 151/294 (51%), Gaps = 19/294 (6%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           + L++ TL +Y    R   + + +     +T+ T +     +++A +++R        S 
Sbjct: 4   KNLAENTLNAYR---RDLSMMVEWLHHRGLTLATAQS---DDLQALLAERLEGGYKATSS 57

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R LS ++   +YL + K   +    ++ + K    LP+ L+E Q   L+   L+     
Sbjct: 58  ARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQP-- 115

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
              ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG+K R+VPL      
Sbjct: 116 ---LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 172

Query: 209 AILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTL 265
            +  Y +   P+ LN ++I + LF   R + +    F   I+      G+     + H L
Sbjct: 173 WLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 231

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           RH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q HP
Sbjct: 232 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQHHP 281


>gi|313901872|ref|ZP_07835292.1| tyrosine recombinase XerD subunit [Thermaerobacter subterraneus DSM
           13965]
 gi|313467865|gb|EFR63359.1| tyrosine recombinase XerD subunit [Thermaerobacter subterraneus DSM
           13965]
          Length = 321

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 98/305 (32%), Positives = 145/305 (47%), Gaps = 20/305 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L+ L +ERGL+  TL +Y  D   F  F A    E   +   R L    I A++ +  
Sbjct: 19  DYLEILRVERGLAAHTLAAYRRDLADFAAFAAARQVEPAGV--TRPL----ILAYLHQLE 72

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  +  R L+ ++ F +YL             M   +    LPR L        VD
Sbjct: 73  RAGRSRATAARRLAALRGFFRYLASEGKVEHDPAEGMATPRGGRPLPRVLA-------VD 125

Query: 140 NV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            V  +L           R+ A+L LLY  GLR+SE + L   +++ D   LR +GKG K 
Sbjct: 126 EVERVLELPQPASPAGLRDRAVLELLYATGLRVSELVGLDLDDLLLDHGLLRCRGKGGKE 185

Query: 198 RIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+     +A  +Y     P       Q  LF   RG  L+       +R+  R  G+
Sbjct: 186 RVVPVAAPAVEATRQYLARGRPALARRPGQRALFLNQRGGRLSRQWVWHLLRRAARRAGV 245

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           P + + HTLRHSFATHLL+ G DLR++Q +LGH  +STTQIYT++   +    ++E Y +
Sbjct: 246 PRAVSPHTLRHSFATHLLAGGADLRAVQELLGHADISTTQIYTHLTRHH----LLEAYLR 301

Query: 317 THPSI 321
            HP +
Sbjct: 302 AHPRM 306


>gi|218194771|gb|EEC77198.1| hypothetical protein OsI_15703 [Oryza sativa Indica Group]
          Length = 752

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 152/301 (50%), Gaps = 15/301 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  L +E GLS+ TL +Y  D   +  +L  +  +  T   +   +   ++A+ + R  
Sbjct: 463 FIDALWLEDGLSRNTLAAYRRDLVLYAQWLGQHASD--TAGALDATAEHHLKAYFAARHA 520

Query: 81  QKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           +     S  R L+ ++ + ++ L++R+I  +  +  ++  ++   +P+ L+  Q      
Sbjct: 521 ETRAT-SANRRLTVLRRYFQWALRERRIAADPTV-RLQAARQPLRVPKTLSAAQV----- 573

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL     +  +  R+ A+L L+Y  GLR++E ++L   +    +  LR+ GKG K R+
Sbjct: 574 EALLQAPDTSTSLGLRDRAMLELMYASGLRVTELVTLKTYHAGLSEGVLRVMGKGGKERL 633

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP      + +  Y D    D+    Q   LF   RG  +   +F   +++  +  G+ +
Sbjct: 634 VPFGEVAAQWMQRYLDEARADILAGQQTDDLFVTRRGAGMTRAMFWVVVKKHAQAAGITV 693

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HTLRH+FATHLL++G DLR +Q +LGH  +STT IYT+V  +     +  ++ Q H
Sbjct: 694 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARER----LKALHAQHH 749

Query: 319 P 319
           P
Sbjct: 750 P 750


>gi|116670082|ref|YP_831015.1| tyrosine recombinase XerD [Arthrobacter sp. FB24]
 gi|116610191|gb|ABK02915.1| tyrosine recombinase XerD [Arthrobacter sp. FB24]
          Length = 346

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 150/328 (45%), Gaps = 58/328 (17%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS-YTEIRAFISKR 78
           ++LQ++ +ERGL+  TL +Y  D  ++  +LA     +    T R ++ + +  +  S  
Sbjct: 45  DYLQHMGVERGLAANTLSAYRRDLARYANYLAACGPSRPGDVTRRHVTGFVQALSDGSDG 104

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            T  +G RS  R++  ++   K+     ITT     ++        LP+A++       V
Sbjct: 105 GT-ALGVRSAARTVVAVRGLHKFWALEGITTADPASDVHPPMPGKRLPKAIS-------V 156

Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQST---LRIQ 191
           D V  +L  +        R+ A+L  LY  G RISEA+ L   +I    DQ+    +R+ 
Sbjct: 157 DEVTRILEAAGTDTATGLRDRALLEFLYSTGARISEAVGLDVDDISLQADQAGPAIVRLF 216

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-------NPGVF- 243
           GKG K R+VPL     +A+  Y                   +RG+PL        P +F 
Sbjct: 217 GKGSKERLVPLGSYGARALDAYL------------------VRGRPLLAAKGKGTPALFL 258

Query: 244 -QRYIRQLRRYLGLPLSTTA-----------HTLRHSFATHLLSNGGDLRSIQSILGHFR 291
             R  R  R+     L   A           HTLRHSFATHLL  G D+R +Q +LGH  
Sbjct: 259 NARGGRISRQSAWTILKAAADKANITKDVSPHTLRHSFATHLLEGGADVRVVQELLGHAS 318

Query: 292 LSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           ++TTQ+YT V +    D + EIY   HP
Sbjct: 319 VTTTQVYTLVTA----DTLREIYAAAHP 342


>gi|332670384|ref|YP_004453392.1| integrase family protein [Cellulomonas fimi ATCC 484]
 gi|332339422|gb|AEE46005.1| integrase family protein [Cellulomonas fimi ATCC 484]
          Length = 322

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 146/305 (47%), Gaps = 26/305 (8%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           +RGLS+ TL +Y+ D  +++ +L     E I  +   +++  ++  F+   RT   G R 
Sbjct: 28  DRGLSENTLLAYQRDLDRYVAYL-----ESIGRRAPDEIAGQDVEGFVDAVRTGSDGRRP 82

Query: 88  LKRS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           L  S     ++ ++ + ++L +  IT +     +R   +   LPRA++ +     V+ +L
Sbjct: 83  LSESSAARLVAAVRGWHRFLARDGITVDDAARAVRPPAQPRRLPRAISVED----VERLL 138

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIV 200
                    + AR+ A+L LLY  G RISE + L   ++   + +  +R+   G K R+ 
Sbjct: 139 DAAGRGEGPVPARDRALLELLYSTGARISEVVGLDLADLDRSERRPAVRLAVGGAKQRVS 198

Query: 201 PLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           PL      A+ EY       L    + + +L +F   RG  L+       +R       L
Sbjct: 199 PLGRRALSALTEYLTQARPALASGADRSDRLAVFLNTRGTRLSRQSAWAVLRSAAHRASL 258

Query: 257 PLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           P +   + HTLRHSFATH+L+ G D+R +Q +LGH  +STTQIY     +     + E Y
Sbjct: 259 PDADVISPHTLRHSFATHMLARGADVRVVQELLGHASVSTTQIYATARDEA----LREAY 314

Query: 315 DQTHP 319
              HP
Sbjct: 315 TAAHP 319


>gi|326382897|ref|ZP_08204587.1| site-specific tyrosine recombinase XerC [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326198487|gb|EGD55671.1| site-specific tyrosine recombinase XerC [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 297

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 138/297 (46%), Gaps = 13/297 (4%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           +L  E+G SK T+++Y  D R  + F      E      +  L    +RA++++   +  
Sbjct: 11  HLSFEKGHSKHTVRAYTGDIRGLVAFAGARGVE------VGDLDLPLLRAWLAEHARRGA 64

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
              ++ R +S  K+F  +  +  +        ++  K    LP  L  +QA   VD    
Sbjct: 65  ARTTIARQVSSAKTFCAWAVREGVLQTDPAQRLQAPKSHRVLPAVLAPEQAAAAVDGAAG 124

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
            ++ +   +  R+  IL LLY CG+R+ E   L   ++  D+  +R+ GKGDK R VP  
Sbjct: 125 DSAGDGDPVAFRDRVILELLYSCGIRVGELCGLDLGDVDADRRVIRVIGKGDKQRSVPYG 184

Query: 204 PSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
                A+ ++       L        L  G++G  L+  + +  + +     G   S   
Sbjct: 185 GPAAAALDDWLRRGRSALATAASGDALLLGVKGGRLDQRMARTVVHRATETAG--QSVGP 242

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V+ +     +  ++ Q HP
Sbjct: 243 HALRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVSVER----LRAVHRQAHP 295


>gi|162329627|ref|YP_471302.2| site-specific tyrosine recombinase XerD [Rhizobium etli CFN 42]
          Length = 317

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 97/320 (30%), Positives = 152/320 (47%), Gaps = 26/320 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR--QLSYTEIRAFIS 76
           +++L+ +  ERG +  TLQSYE D      FL          ++IR  + +  ++ A+++
Sbjct: 10  ESFLEMMSAERGAAANTLQSYERDLDDVRSFL--------NGRSIRLTEAASADLAAYLA 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               Q     S  R L+ ++ F K+L    + T+     +   KK   LP+ +  ++   
Sbjct: 62  SLARQGFKPSSQARRLAAMRQFYKFLYAEGLRTDDPTGVLDAPKKGRPLPKTMGVEEVGR 121

Query: 137 LVDNVLLHTSHETKWIDARNS--AILYLLYGCGLRISEALSLTPQNIMDDQST-LRIQGK 193
           L+                R    A+L LLY  G+R+SE +SL P  ++D +   L I+GK
Sbjct: 122 LLSQAQTEADDPAPGQLQRRRMLALLELLYATGMRVSELVSL-PARVLDQEGRFLMIRGK 180

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNP-GVFQRYI 247
           G+K R+VPL  S   A+  Y  L         + P     LF     +   P  VF R +
Sbjct: 181 GNKERLVPLSHSAIAALKSYGRLL-AADAAAAKEPQESPWLFPAASKEGYLPRQVFARDL 239

Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           + L    GL P   + H +RH+FA+HLL+NG DLR +Q +LGH  +STTQIYT+V  +  
Sbjct: 240 KNLAIRAGLTPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER- 298

Query: 307 GDWMMEIYDQTHPSITQKDK 326
              + ++    HP   Q  K
Sbjct: 299 ---LQQLVQMHHPLAKQAKK 315


>gi|152981084|ref|YP_001352164.1| integrase/recombinase [Janthinobacterium sp. Marseille]
 gi|151281161|gb|ABR89571.1| integrase/recombinase [Janthinobacterium sp. Marseille]
          Length = 301

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 140/286 (48%), Gaps = 12/286 (4%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E   +   L +E GL+K +L++Y  D R F  +L     + +       L+      F +
Sbjct: 11  EIDEFCDTLWLEDGLAKNSLEAYRRDLRLFATWLQQERGKSLLAAHTEDLNGY----FFA 66

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           K  T K    S  R L+ +K F +   ++    +   L +R+ K+   +P+ L+E Q   
Sbjct: 67  KHATTKA--TSSNRRLAVLKRFYQLALRQNKIKDDPCLRLRSAKQPPRMPKTLSEAQVEA 124

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+    ++T      +  R+  +L L+Y  GLR++E + L    +  ++  LR+ GKG K
Sbjct: 125 LLAAPDVNTP-----LGLRDRTMLELMYASGLRVTELVLLKSVEVGMNEGVLRVTGKGGK 179

Query: 197 IRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R++P     R  I  Y  +     LN  +   LF   RG  +   +F   I++      
Sbjct: 180 TRLIPFGEEARAWIERYLKEARGAILNGQMDDALFVTARGGAMTRQMFWTLIKKHAAAAD 239

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 240 INAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 285


>gi|255037676|ref|YP_003088297.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254950432|gb|ACT95132.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 290

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 149/301 (49%), Gaps = 19/301 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE--EKITIQTIRQLSYTEIRAFISKR 78
           +L+ L+ E+  S  T++SY+ D  QF  +L F  E  E  T +         +R+++   
Sbjct: 5   FLEFLQFEKRASAHTIKSYQTDLEQFQKYLLFQYECNEPETAKA------PMLRSWVVSM 58

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   S+ R ++ +++F  YL+K+K         +  LK    LP  + EK    L 
Sbjct: 59  MEEGLNPSSINRKIAALRTFYGYLRKKKHIDSDPTKILSALKTRKKLPAFVEEKSMELLF 118

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +  +        +   R+  I+ LLYG G+R+SE + L  +++     T+R+ GK  K R
Sbjct: 119 EEGVFSED----FSGLRDRVIMELLYGSGIRLSELVELELKDLNLPARTIRVFGKRAKER 174

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVP+  S+ + + +Y +    + + ++   L      K + P   QR ++Q    +    
Sbjct: 175 IVPVSTSLAQLLHKYTEQRAPEEDTDV---LLLTDSNKAIYPVFVQRKVKQYLSAVTTLS 231

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH++ATHLL+ G DL +I+ +LGH  L+ TQIYT+    N  + + + + Q H
Sbjct: 232 QKSPHVLRHTYATHLLNRGADLNAIKELLGHANLAATQIYTH----NSIEKLKKTHQQAH 287

Query: 319 P 319
           P
Sbjct: 288 P 288


>gi|121998438|ref|YP_001003225.1| tyrosine recombinase XerD [Halorhodospira halophila SL1]
 gi|121589843|gb|ABM62423.1| tyrosine recombinase XerD [Halorhodospira halophila SL1]
          Length = 254

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 125/251 (49%), Gaps = 10/251 (3%)

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++ A++++R       R+  R LS ++ F + L      ++     +   +    LP AL
Sbjct: 11  DVFAYLAERVAAGARPRTTARLLSSLRRFYRRLVSTGERSDDPTAEVEAPRLGQPLPGAL 70

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            E+Q        LL        +  R+  +L +LY  GLR+SE ++L    +   Q  +R
Sbjct: 71  TERQV-----EALLAAPDTGDPLGLRDRCLLEVLYATGLRVSELVALRVDGVSLRQGVVR 125

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           + GKGD+ R+VPL       +  Y + + P  L+      LF   RG+ L    F   ++
Sbjct: 126 VIGKGDRERLVPLGEEAVDWVRRYLEEVRPLLLDGRAAEALFVTRRGEGLTRQAFWYRVK 185

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     G+  + + HTLRHSFATHL+++G DLR +Q +LGH  LSTTQIYT+V  +    
Sbjct: 186 RYAAAAGIDPAISPHTLRHSFATHLINHGADLRVVQMLLGHADLSTTQIYTHVARQR--- 242

Query: 309 WMMEIYDQTHP 319
            + +++   HP
Sbjct: 243 -LQQLHAAHHP 252


>gi|269792953|ref|YP_003317857.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100588|gb|ACZ19575.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 292

 Score =  115 bits (288), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 137/300 (45%), Gaps = 24/300 (8%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G S+ T+ +Y  D  QF  +L     E+  +  ++ ++   +R F+           S  
Sbjct: 13  GRSEHTVINYGVDLGQFAEYL-----EQAEVHRVQDITRDHVRGFLRSLVGYGFAKASAL 67

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R +S I+ F+ YL+   +        ++  + S  LPRA++      L++      S   
Sbjct: 68  RKMSSIRGFMGYLRDIGVIERDPSEGVKGPRSSPGLPRAISYPDVCRLLEE---GPSGRE 124

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
            +   R+  ++ LLYG GLR+SE   L   ++  ++  +R+ GKG K R+VP    V+  
Sbjct: 125 AF---RDRLVMELLYGSGLRVSELCDLDWDDVDVEERWIRVMGKGSKGRMVPFGSIVQDM 181

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           +  + ++      +    PLF G RG   L      R +    R +GL    + HTLRHS
Sbjct: 182 LRRWGEM------VGRAGPLFPGKRGAERLTQRTVHRIVSGCARRVGL-FGVSPHTLRHS 234

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           FATHLL  G  LR +Q ++GH  L TTQ Y +V ++      M    Q H      DK +
Sbjct: 235 FATHLLEGGASLRVVQELMGHESLVTTQRYLDVTAER-----MRFSYQVHHPRAGGDKSH 289


>gi|16803317|ref|NP_464802.1| hypothetical protein lmo1277 [Listeria monocytogenes EGD-e]
 gi|224499052|ref|ZP_03667401.1| hypothetical protein LmonF1_04845 [Listeria monocytogenes Finland
           1988]
 gi|224501778|ref|ZP_03670085.1| hypothetical protein LmonFR_04567 [Listeria monocytogenes FSL
           R2-561]
 gi|254829966|ref|ZP_05234621.1| hypothetical protein Lmon1_01355 [Listeria monocytogenes 10403S]
 gi|255016911|ref|ZP_05289037.1| hypothetical protein LmonF_02001 [Listeria monocytogenes FSL
           F2-515]
 gi|284801662|ref|YP_003413527.1| hypothetical protein LM5578_1415 [Listeria monocytogenes 08-5578]
 gi|284994804|ref|YP_003416572.1| hypothetical protein LM5923_1368 [Listeria monocytogenes 08-5923]
 gi|34222941|sp|Q8Y7K0|XERC_LISMO RecName: Full=Tyrosine recombinase xerC
 gi|16410693|emb|CAC99355.1| codV [Listeria monocytogenes EGD-e]
 gi|284057224|gb|ADB68165.1| hypothetical protein LM5578_1415 [Listeria monocytogenes 08-5578]
 gi|284060271|gb|ADB71210.1| hypothetical protein LM5923_1368 [Listeria monocytogenes 08-5923]
          Length = 300

 Score =  115 bits (288), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 148/309 (47%), Gaps = 21/309 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q +   L  ER  S  T  +YE D    L F  F  E+ IT  T +Q+++ ++R ++
Sbjct: 6   KLEQQFFDYLHSERNYSVNTSTAYEND---LLDFRRFLNEQAIT--TYQQVTFLDVRIYL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++ + +     ++ R +S ++SF  +L +  +  E+    + + K    LP+    ++  
Sbjct: 61  TELKQKSFSRTTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEME 120

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L   V      + + +  R+  +L +LYG G+R+SE   +   ++      + I+GKG+
Sbjct: 121 ALFQVVY----EDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGN 176

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVFQRYIRQL 250
           K R VP       AI +Y    P  +NL  +       L     G PL     +  + ++
Sbjct: 177 KERYVPFGAYAEDAITDY---LPERVNLMSRYKKSHDALLVNHYGDPLTTRGIRYCLTKI 233

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                L      H LRH+FAT LL+NG D+R++Q +LGH  LS+TQIYT+V  ++    +
Sbjct: 234 ISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----L 289

Query: 311 MEIYDQTHP 319
              Y + HP
Sbjct: 290 KSTYMKHHP 298


>gi|329946754|ref|ZP_08294166.1| site-specific recombinase, phage integrase family [Actinomyces sp.
           oral taxon 170 str. F0386]
 gi|328526565|gb|EGF53578.1| site-specific recombinase, phage integrase family [Actinomyces sp.
           oral taxon 170 str. F0386]
          Length = 264

 Score =  115 bits (288), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 83/268 (30%), Positives = 133/268 (49%), Gaps = 22/268 (8%)

Query: 66  LSYTEIRAFISKRRTQKIGDRSLK-----RSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           +S  ++  F+   RT   G R L      R+++ ++ + K+L     T++     +R  +
Sbjct: 1   MSRNDVTGFLEALRTGADGARPLASSSASRTVTAVRGWHKFLLAEGTTSQDPSATVRPPQ 60

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LP+AL+ ++    V  +L   S +   +  R+ A+L +LY  G RISEA+ L   +
Sbjct: 61  PGRRLPKALSIEE----VRRLLEAASIDDSPVSLRDRALLEVLYATGARISEAVGLVVDD 116

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLP-LFRGIRGKPL 238
           +  D   LR+ GKG K R+VP+     +A+  Y     P        +P +F    G+PL
Sbjct: 117 LDADSRLLRLFGKGRKERVVPMGTYAWEALDAYLVRGRPALAEKGRGVPQVFLNTLGRPL 176

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTA-------HTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           +       ++Q     GL  +  +       HTLRHSFATHLL+ G D+R +Q +LGH  
Sbjct: 177 SRQSAWAVLQQAAERAGLTGAGASTERHISPHTLRHSFATHLLAGGADVRVVQEMLGHAS 236

Query: 292 LSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           ++TTQIYT V      D + E+Y  +HP
Sbjct: 237 VTTTQIYTKVTV----DHLREVYATSHP 260


>gi|251810683|ref|ZP_04825156.1| tyrosine recombinase XerC [Staphylococcus epidermidis BCM-HMP0060]
 gi|293366784|ref|ZP_06613460.1| tyrosine recombinase XerC [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|251805843|gb|EES58500.1| tyrosine recombinase XerC [Staphylococcus epidermidis BCM-HMP0060]
 gi|291319085|gb|EFE59455.1| tyrosine recombinase XerC [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 286

 Score =  115 bits (288), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 163/303 (53%), Gaps = 32/303 (10%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L++ER  S+ TL+SY  D  QF  FL     E + ++T     Y + R +++   + ++ 
Sbjct: 2   LKVERNFSEYTLKSYHDDLVQFNNFLE---REHLQLET---FEYKDARNYLAFLYSNQLK 55

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNEKQALTLVDN 140
             ++ R +S +++F ++     +T +++I+N    + + KK   LP+   E++   L   
Sbjct: 56  RTTVSRKISTLRTFYEFW----MTQDNSIINPFVQLVHPKKEKYLPQFFYEEEMEALFQT 111

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           V     H+ K    R+  I+ LLY  G+R+SE +++  ++I  +   +++ GKG+K R +
Sbjct: 112 V----EHDNKK-GIRDKVIIELLYATGIRVSELINIKLKDIDMNLPGVKVLGKGNKERFI 166

Query: 201 PLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQ--LRRYLGL 256
           P     R++I  Y +   P  L  +  L +   ++G P+   GV  RY+    ++R  G+
Sbjct: 167 PFGEFCRQSIERYLEEFQPKQLANHDYLIV--NMKGDPITERGV--RYVLNDVVKRTAGV 222

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++     + ++Y  
Sbjct: 223 N-DIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQ----LRKVYLN 277

Query: 317 THP 319
            HP
Sbjct: 278 AHP 280


>gi|183600284|ref|ZP_02961777.1| hypothetical protein PROSTU_03843 [Providencia stuartii ATCC 25827]
 gi|188020074|gb|EDU58114.1| hypothetical protein PROSTU_03843 [Providencia stuartii ATCC 25827]
          Length = 309

 Score =  115 bits (288), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 93/311 (29%), Positives = 157/311 (50%), Gaps = 26/311 (8%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L+ + + +L+ L+IER LS +T+ +Y    RQ  + +    E  + +   RQL  T+ R 
Sbjct: 13  LMIQVEAFLRYLQIERRLSPVTITNYR---RQLTVVVEMLNE--MNVSEWRQLDATKARN 67

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             +K R + +   S+   LS ++SF  ++ ++   + + +  +   K    LP+ ++   
Sbjct: 68  VAAKSRRKGLQAASMALRLSALRSFCDWMVQQDKLSANPVTAVHAPKAKKRLPKNMD--- 124

Query: 134 ALTLVDNVLLHTSHET-KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               VD V    S E+   +  R+  +L ++YG GLR+SE + L  +++      +R+ G
Sbjct: 125 ----VDEVSKLLSMESGDPLVVRDRTMLEVMYGAGLRLSELVGLDVRHLDLAMGEVRVMG 180

Query: 193 KGDKIRIVPL---LPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           KG K R +PL     S  K  LE  +L  P D  + I     + I  + +     Q  I+
Sbjct: 181 KGSKERKIPLGKTAVSWLKRWLEMRELYEPEDGAVFISTKSGKRISNRNVQKRFEQWGIK 240

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           Q     G+      H LRHSFATH+L + G+LR +Q +LGH  LSTTQIYT+++ ++   
Sbjct: 241 Q-----GVNSHINPHKLRHSFATHILESSGNLRGVQELLGHANLSTTQIYTHLDFQH--- 292

Query: 309 WMMEIYDQTHP 319
            +  +YD  HP
Sbjct: 293 -LANVYDVAHP 302


>gi|300714802|ref|YP_003739605.1| Tyrosine recombinase XerC [Erwinia billingiae Eb661]
 gi|299060638|emb|CAX57745.1| Tyrosine recombinase XerC [Erwinia billingiae Eb661]
          Length = 302

 Score =  115 bits (288), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 151/305 (49%), Gaps = 25/305 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L++ER LS LT  +Y+   RQ    LA  TE K+T     +L   ++R+  ++ 
Sbjct: 12  EGFLRYLKVERQLSPLTQINYQ---RQLAACLALLTEMKLT--AWDKLDAAQVRSLAARS 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R   +   SL   LS ++SFL +   + +   +    +   +    LP+ ++  +   L+
Sbjct: 67  RRGGLKPASLALRLSALRSFLDWQISQGVLKANPAKGVATPRAPRHLPKNIDVDEVSQLL 126

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D  L         +  R+ A+L ++YG GLR+SE + +   ++      + + GKG K R
Sbjct: 127 DIDL------NDPLAVRDRAMLEIMYGAGLRLSELVGIDTGHLDLASGEVWVVGKGSKER 180

Query: 199 IVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            +P+  +  + +  + ++     P D  +      F    GK ++    Q+   +     
Sbjct: 181 RLPIGRTAVQWMEHWLEMRELFAPEDQAV------FLSKYGKRMSARNVQKRFAEWGAKQ 234

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+      H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++    +  +Y
Sbjct: 235 GVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LASVY 290

Query: 315 DQTHP 319
           D  HP
Sbjct: 291 DAAHP 295


>gi|258405471|ref|YP_003198213.1| tyrosine recombinase XerD [Desulfohalobium retbaense DSM 5692]
 gi|257797698|gb|ACV68635.1| tyrosine recombinase XerD [Desulfohalobium retbaense DSM 5692]
          Length = 306

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 145/286 (50%), Gaps = 12/286 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +  ++++L + +GL+  ++ +Y  D   F+ FL    E+K   +++          F+  
Sbjct: 15  KDAYVEHLLVIKGLADPSVAAYVQDIEMFIQFL----EQKG--ESVATCDANAFLYFLLH 68

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            +++ + +R++ R LS ++ F ++L+      +    ++   K +  LP  L+ ++    
Sbjct: 69  LKSRGLTNRTIARHLSSLRGFFQFLQTSNRRVDDPTAHVDGPKLTRQLPEFLDVQE---- 124

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +  +L      TK +  R+  IL LLY  GLR+SE + L   +I      +R+ GKG K 
Sbjct: 125 MQGLLAQPDTGTK-LGFRDRTILELLYAAGLRVSEVIRLQALDIDSQTGVVRVWGKGAKE 183

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VPL P+    +  Y            ++ LF    G+ L+     + +++     G+ 
Sbjct: 184 RLVPLHPAALDYVRTYVQAWRPQFAPQHKV-LFLNRSGRCLSRQAVWKNVKRYAVAAGIR 242

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            S + HT+RHSFATHLL  G DLR++Q +LGH  +S T+IYT+V +
Sbjct: 243 RSISPHTIRHSFATHLLEGGADLRTVQLLLGHADISATEIYTHVQA 288


>gi|47097538|ref|ZP_00235075.1| integrase/recombinase XerC [Listeria monocytogenes str. 1/2a F6854]
 gi|254828640|ref|ZP_05233327.1| integrase/recombinase XerC [Listeria monocytogenes FSL N3-165]
 gi|254898558|ref|ZP_05258482.1| hypothetical protein LmonJ_02045 [Listeria monocytogenes J0161]
 gi|254911951|ref|ZP_05261963.1| integrase/recombinase XerC [Listeria monocytogenes J2818]
 gi|254936278|ref|ZP_05267975.1| integrase/recombinase XerC [Listeria monocytogenes F6900]
 gi|47014086|gb|EAL05082.1| integrase/recombinase XerC [Listeria monocytogenes str. 1/2a F6854]
 gi|258601039|gb|EEW14364.1| integrase/recombinase XerC [Listeria monocytogenes FSL N3-165]
 gi|258608867|gb|EEW21475.1| integrase/recombinase XerC [Listeria monocytogenes F6900]
 gi|293589913|gb|EFF98247.1| integrase/recombinase XerC [Listeria monocytogenes J2818]
          Length = 300

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 147/306 (48%), Gaps = 21/306 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +   L  ER  S  T  +YE D    L F  F  E+ IT  T +Q+++ ++R ++++ 
Sbjct: 9   QQFFDYLHSERNYSVNTSTAYEND---LLDFRRFLNEQAIT--TYQQVTFLDVRIYLTEL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + +     ++ R +S ++SF  +L +  +  E+    + + K    LP+    ++   L 
Sbjct: 64  KQKSFSRTTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEMEALF 123

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             V      + + +  R+  +L +LYG G+R+SE   +   ++      + I+GKG+K R
Sbjct: 124 QVVY----EDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKER 179

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVFQRYIRQLRRY 253
            VP       AI +Y    P  +NL  +       L     G PL     +  + ++   
Sbjct: 180 YVPFGAYAEDAITDY---LPERVNLMSRYKKSHDALLVNHYGDPLTTRGIRYCLTKIISK 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRH+FAT LL+NG D+R++Q +LGH  LS+TQIYT+V  ++    +   
Sbjct: 237 ASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----LKST 292

Query: 314 YDQTHP 319
           Y + HP
Sbjct: 293 YMKHHP 298


>gi|283781943|ref|YP_003372698.1| integrase family protein [Pirellula staleyi DSM 6068]
 gi|283440396|gb|ADB18838.1| integrase family protein [Pirellula staleyi DSM 6068]
          Length = 314

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 149/305 (48%), Gaps = 21/305 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++++ L  E  L+K ++ +Y+ D  +F  +L      K+T++ +     T+  AF+   
Sbjct: 25  RSFIEYLRTECHLAKNSVAAYQRDMTRFCRWLGDRFIPKLTVRDL-----TDYLAFM--- 76

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R + +  +S+ R +  +K FL+YL+   I  ++    +   K + ++P  L+   A  L+
Sbjct: 77  REENLDPKSIARHVVTLKLFLRYLQLEGIIKDNPAELLGTTKTAATIPDVLSPTVAARLL 136

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D            +  R+ A+L LLY  G R SE   +  +++  +      +GKG K R
Sbjct: 137 D-----APQPYDPLFRRDRALLELLYATGCRASEVSVMEVRDLRIEDRFCLARGKGSKER 191

Query: 199 IVPLLPSVRKAILEY--YDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +VPL      A+  Y  ++           +P  L    RG+ L        ++Q     
Sbjct: 192 LVPLGDPALAAVEAYLEHERPKLAAKSKQGVPPWLLLSSRGQRLTRQKIWELVKQYALRC 251

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G P S + HTLRHSFATHLLS G DLR +Q +LGH  + TTQIYT+V+       + +I+
Sbjct: 252 GAPASMSPHTLRHSFATHLLSGGADLRQVQELLGHASIGTTQIYTHVDQSR----LKKIH 307

Query: 315 DQTHP 319
            Q HP
Sbjct: 308 SQFHP 312


>gi|117625125|ref|YP_854113.1| site-specific tyrosine recombinase XerD [Escherichia coli APEC O1]
 gi|115514249|gb|ABJ02324.1| site-specific tyrosine recombinase XerD [Escherichia coli APEC O1]
          Length = 264

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 13/253 (5%)

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +++A +++R        S  R LS ++   +YL + K   +    ++ + K    LP+ L
Sbjct: 20  DLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDL 79

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +E Q   L+   L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R
Sbjct: 80  SEAQVERLLQAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVR 134

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYI 247
           + GKG+K R+VPL       +  Y +   P+ LN ++I + LF   R + +    F   I
Sbjct: 135 VIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRI 193

Query: 248 RQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +      G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++  
Sbjct: 194 KHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER- 252

Query: 307 GDWMMEIYDQTHP 319
              + +++ Q HP
Sbjct: 253 ---LRQLHQQHHP 262


>gi|242242534|ref|ZP_04796979.1| tyrosine recombinase XerC [Staphylococcus epidermidis W23144]
 gi|242233961|gb|EES36273.1| tyrosine recombinase XerC [Staphylococcus epidermidis W23144]
          Length = 286

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 159/299 (53%), Gaps = 24/299 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L++ER  S+ TL+SY  D  QF  FL     E + ++T     Y + R +++   + ++ 
Sbjct: 2   LKVERNFSEYTLKSYHDDLVQFNNFLE---REHLQLET---FEYKDARNYLAFLYSNQLK 55

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             ++ R +S +++F ++   +  +  +  + + + KK   LP+   E++   L   V   
Sbjct: 56  RTTVSRKISTLRTFYEFWMTQNNSIINPFVQLVHPKKEKYLPQFFYEEEMEALFQTV--- 112

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
             H+ K    R+  I+ LLY  G+R+SE +++  ++I  +   +++ GKG+K R +P   
Sbjct: 113 -EHDNKK-GIRDKVIIELLYATGIRVSELINIKLKDIDMNLPGVKVLGKGNKERFIPFGE 170

Query: 205 SVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQ--LRRYLGLPLST 260
             R++I  Y +   P  L  +  L +   ++G P+   GV  RY+    ++R  G+    
Sbjct: 171 FCRQSIERYLEEFQPKQLANHDYLIV--NMKGDPITERGV--RYVLNDVVKRTAGVN-DI 225

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
             H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++     + ++Y   HP
Sbjct: 226 HPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQ----LRKVYLNAHP 280


>gi|300114666|ref|YP_003761241.1| tyrosine recombinase XerD [Nitrosococcus watsonii C-113]
 gi|299540603|gb|ADJ28920.1| tyrosine recombinase XerD [Nitrosococcus watsonii C-113]
          Length = 305

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 154/302 (50%), Gaps = 16/302 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +E GL++ TL +Y  D   F  +L   ++ +  I+  R+    ++ A+++ R
Sbjct: 17  ERFLDTLWLEEGLAENTLAAYRRDLEGFSRWLD--SQGRALIRAQRE----DVLAYLAHR 70

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  RS+ RS+S ++ F +YL + KI        +   +    LP +L+E +     
Sbjct: 71  LEGGGKSRSVARSVSSLRRFYRYLMREKIRDSDPSDRVELPRLGRLLPESLSEGEV---- 126

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL        +  R+  +L  LY  GLR+SE ++LT   +   Q  +R+ GKG+K R
Sbjct: 127 -EALLAAPKTNDSLGLRDRTMLETLYATGLRVSELVNLTLSQLNSRQGVVRLSGKGNKER 185

Query: 199 IVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       +  Y ++  P  +   +   LF   RG  ++   F   I++  R  G+ 
Sbjct: 186 LVPLGEVALSWLDRYCHEARPGLVRGQLNEILFLTRRGGAMSRQAFWYLIKRYARQSGIQ 245

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + +++ Q 
Sbjct: 246 KTLSPHTLRHAFATHLLNHGADLRVVQILLGHADLSTTQIYTHVARAR----LQQLHQQH 301

Query: 318 HP 319
           HP
Sbjct: 302 HP 303


>gi|294828085|ref|NP_712528.2| integrase/recombinase XerD [Leptospira interrogans serovar Lai str.
           56601]
 gi|302393797|sp|Q7ZAM8|XERC_LEPIN RecName: Full=Tyrosine recombinase xerC
 gi|302393800|sp|Q72RY9|XERC_LEPIC RecName: Full=Tyrosine recombinase xerC
 gi|293385933|gb|AAN49546.2| integrase/recombinase XerD [Leptospira interrogans serovar Lai str.
           56601]
          Length = 311

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 158/320 (49%), Gaps = 26/320 (8%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
            PE  S  L +  + ++  L+IE+  S+ T+ +Y  D +    F  F  +E++ I  I  
Sbjct: 8   FPEFSSESLNETAKKFINYLKIEKNYSQNTINAYSIDLK---FFFEFCEKEQLDIFQIEP 64

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +      A+++K+   +I  RS  R LS +++F K L +  +   +    +   K    +
Sbjct: 65  VDIRSYFAYLAKK--HEIDRRSQSRKLSSLRTFYKVLLREDLVKSNPATQLSFPKVRKEV 122

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P+     +   +++     + + ++  + R+ A++ +LY  GLR+ E ++    ++  D 
Sbjct: 123 PKNFRINETEEILE---FESENASEVSEIRDRAMIEVLYSSGLRVFELVNAKLNSLSKDL 179

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNP- 240
           + L++ GKG K R V        ++ +Y +        N+  P    +F   RGK L   
Sbjct: 180 TVLKVLGKGRKERFVYFGKEAVSSLQKYLEY------RNVSFPDAEEIFLNQRGKKLTTR 233

Query: 241 GVFQRYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           GV  RYI  + R+ +G   + T H  RH+FAT LL  G ++R++Q +LGH  LSTTQIY 
Sbjct: 234 GV--RYILNERRKKMGWEKTITPHKFRHTFATDLLDAGAEIRAVQELLGHSSLSTTQIYL 291

Query: 300 NVNSKNGGDWMMEIYDQTHP 319
           +V+ +     + E+Y + HP
Sbjct: 292 SVSKEK----IKEVYRKAHP 307


>gi|316931928|ref|YP_004106910.1| tyrosine recombinase XerD [Rhodopseudomonas palustris DX-1]
 gi|315599642|gb|ADU42177.1| tyrosine recombinase XerD [Rhodopseudomonas palustris DX-1]
          Length = 327

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 140/295 (47%), Gaps = 26/295 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  +  E+G S  TL +Y  D      FL   +  +++I          +R +++    
Sbjct: 26  FLDMIAAEQGASANTLDAYRRDLADLSHFL---SRRRLSIGAA---DTAALRGYLADLDK 79

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     S+ R LS ++   ++L   +I  +     +   K+  SLP+ L+    +  VD 
Sbjct: 80  RGFATSSVARRLSALRHLFRFLLSERIRADDPAAILAGPKRGRSLPKVLS----IADVDR 135

Query: 141 VLLHTSHETKWID-------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           +L     E    +       AR + +L +LY  GLR+SE ++L       D   + ++GK
Sbjct: 136 LLACARQEADAAEGAARLRAARLNCLLEVLYATGLRVSELMALPLSAARRDARIIVVRGK 195

Query: 194 GDKIRIVPLLPSVRKAILEYYDLC------PFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           GDK R+VPL    ++A+  Y +        P   +     P F G  G  L    F R +
Sbjct: 196 GDKERLVPLNAGAKQAMARYLEEVAAVAKDPKGASSKWLFPSF-GDSGH-LTRQHFARDL 253

Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + L    GL P   + H LRH+FA+HLL NG DLR +Q++LGH  +STTQIYT+V
Sbjct: 254 KDLAARAGLSPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHV 308


>gi|262184376|ref|ZP_06043797.1| site-specific tyrosine recombinase XerC [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 292

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 153/306 (50%), Gaps = 30/306 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTR----QFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +++ +   I RG S+ T++ Y  D R    +   F AF      T+ ++R+        +
Sbjct: 10  EDFAEYQRIVRGRSEATVRGYCSDLRLLAPEVPEFAAF------TLNSLRE--------W 55

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQ 133
           ++    +     +L R  + +++F  +   R+   ES++   +   K    LP  ++   
Sbjct: 56  LAHAVAEGKSRSTLARRTAAVRAFSTW-AAREGYLESDVAQRLATPKVGKHLPTVMSPTA 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           A  L+ N +  ++ E  ++  R+SA+L  LY  G+R++E + L   +I   + T R+ GK
Sbjct: 115 AGELMGNAV--STDEVHFL--RDSAMLEFLYATGVRVAELVGLDVGDIDLSRRTARVTGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R+VP   +   A+  +      +L    +  +F G RG  ++    +R + +  + 
Sbjct: 171 GNKQRVVPFGDAAHDALCAWLKTGRPELAGETE-AVFVGTRGGRIDARQVRRVVERAAQV 229

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G P   T H LRHS ATHLL  G DLR +Q +LGH  L TTQ+YT+V+++     + ++
Sbjct: 230 TGAP-GLTPHGLRHSAATHLLEGGADLRIVQELLGHSSLQTTQVYTHVSAQR----LKDV 284

Query: 314 YDQTHP 319
           Y ++HP
Sbjct: 285 YARSHP 290


>gi|218131523|ref|ZP_03460327.1| hypothetical protein BACEGG_03142 [Bacteroides eggerthii DSM 20697]
 gi|217986455|gb|EEC52792.1| hypothetical protein BACEGG_03142 [Bacteroides eggerthii DSM 20697]
          Length = 316

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 144/286 (50%), Gaps = 14/286 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + Q L++E+ L+  T  +Y  D ++ L FL     E I +  +   +  +++ F +  
Sbjct: 18  RKYQQYLKLEKSLASNTFDAYMTDLQKLLHFLE---GENIEVGNV---TPDDLQRFAAGL 71

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               I  RS  R LSGIKSF  +L             +   K    +P  L  ++    +
Sbjct: 72  HDIGIHPRSQARILSGIKSFFHFLTVADYLETDPSELLEGPKIGFKIPEVLTVEE----I 127

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D ++     + K    RN AIL  LY CGLR+SE  +L   ++  ++  ++++GKG K R
Sbjct: 128 DRIISAVDMDKKE-GQRNRAILETLYSCGLRVSELCNLKLSDLYFEEGFIKVEGKGSKQR 186

Query: 199 IVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VP+ P   K I +Y+  D     +    +  +F    G  ++  +    I++L    G+
Sbjct: 187 LVPISPRAIKEI-KYWLTDRNLGKIKKGYEDYVFLARWGNNISRIMVFHMIKELAEKTGI 245

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++
Sbjct: 246 TKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHID 291


>gi|45657471|ref|YP_001557.1| putative integrase/recombinase protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|45600710|gb|AAS70194.1| putative integrase/recombinase protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 332

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 158/320 (49%), Gaps = 26/320 (8%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
            PE  S  L +  + ++  L+IE+  S+ T+ +Y  D +    F  F  +E++ I  I  
Sbjct: 29  FPEFSSESLNETAKKFINYLKIEKNYSQNTINAYSIDLK---FFFEFCEKEQLDIFQIEP 85

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +      A+++K+   +I  RS  R LS +++F K L +  +   +    +   K    +
Sbjct: 86  VDIRSYFAYLAKK--HEIDRRSQSRKLSSLRTFYKVLLREDLVKSNPATQLSFPKVRKEV 143

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P+     +   +++     + + ++  + R+ A++ +LY  GLR+ E ++    ++  D 
Sbjct: 144 PKNFRINETEEILE---FESENASEVSEIRDRAMIEVLYSSGLRVFELVNAKLNSLSKDL 200

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNP- 240
           + L++ GKG K R V        ++ +Y +        N+  P    +F   RGK L   
Sbjct: 201 TVLKVLGKGRKERFVYFGKEAVSSLQKYLEYR------NVSFPDAEEIFLNQRGKKLTTR 254

Query: 241 GVFQRYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           GV  RYI  + R+ +G   + T H  RH+FAT LL  G ++R++Q +LGH  LSTTQIY 
Sbjct: 255 GV--RYILNERRKKMGWEKTITPHKFRHTFATDLLDAGAEIRAVQELLGHSSLSTTQIYL 312

Query: 300 NVNSKNGGDWMMEIYDQTHP 319
           +V+ +     + E+Y + HP
Sbjct: 313 SVSKEK----IKEVYRKAHP 328


>gi|119469654|ref|ZP_01612523.1| site-specific recombinase [Alteromonadales bacterium TW-7]
 gi|119446901|gb|EAW28172.1| site-specific recombinase [Alteromonadales bacterium TW-7]
          Length = 314

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 137/267 (51%), Gaps = 41/267 (15%)

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSL 125
            IR +    R +++  R++   LS I+S  K+LK + I  +S+  N    ++  K +  L
Sbjct: 65  HIRRYSMALRAKQLSGRTISLKLSCIRSLYKFLKAKNIAQQSHYHNPATGIKGPKFAKPL 124

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P+ L+  Q   L++        +   +  R+ A++ L+Y  GLRISE +    Q+I    
Sbjct: 125 PKNLDVDQMARLLEIP------DDDPLAIRDKAMMELMYSSGLRISELVGANMQDINAKS 178

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF-- 243
             + ++GKG+K R++P+     +A+ ++  + P       Q         KP  PGVF  
Sbjct: 179 GEILVRGKGNKERLIPVGTKALEALKKWLTVRP-------QF-------AKPDEPGVFLS 224

Query: 244 ----QRYIRQLRRYL-------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
               +  IRQ+R  +       G+      H LRHSFA+H+L + GDLR++Q +LGH  L
Sbjct: 225 SQKNRISIRQVRLRMQEWGIKQGISSQVHPHKLRHSFASHILESSGDLRAVQELLGHSSL 284

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHP 319
           S TQ+YT+++ ++    + ++YD THP
Sbjct: 285 SATQVYTHLDFQH----LAKVYDNTHP 307


>gi|311281510|ref|YP_003943741.1| tyrosine recombinase XerC [Enterobacter cloacae SCF1]
 gi|308750705|gb|ADO50457.1| tyrosine recombinase XerC [Enterobacter cloacae SCF1]
          Length = 300

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 149/302 (49%), Gaps = 19/302 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L +ER LS +TL +Y    RQ    +    E  +   + +Q     IR++  + 
Sbjct: 11  ERFLRYLGVERQLSPITLLNYR---RQLDAIMTLAGESGVA--SWQQCDAAVIRSWAVRS 65

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R + +G  SL   LS ++SF  +L  +   + +    +   K    LP+ ++      L+
Sbjct: 66  RRKGLGPASLALRLSALRSFFDWLVSQGELSANPAKAVSAPKAPRHLPKNIDVDDVNRLL 125

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D  L         +  R+ A+L ++YG GLR+SE ++L  +++  +   + + GKG K R
Sbjct: 126 DIDL------NDPLAVRDRAMLEVMYGAGLRLSELVNLDLRHLSLESGEVWVMGKGSKER 179

Query: 199 IVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
            +P+  S  + +  + DL   F    +    LF    GK ++    Q+   +     GL 
Sbjct: 180 RLPIGRSAVQWVEHWLDLRGLFGAEDD---ALFLSKLGKRISTRNVQKRFAEWGIKQGLN 236

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  +YD  
Sbjct: 237 SHVNPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAA 292

Query: 318 HP 319
           HP
Sbjct: 293 HP 294


>gi|126726516|ref|ZP_01742357.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2150]
 gi|126704379|gb|EBA03471.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2150]
          Length = 312

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 144/301 (47%), Gaps = 38/301 (12%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+    E   S+ TL +Y  D + F  ++A    +K+  QT    S  +I  ++    
Sbjct: 14  TFLEAQSAELDASENTLLAYARDLKDFQDWIA---RQKLDFQTT---SREDIEKYLINCD 67

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q +   +  R LS +K   ++  +     ++  L ++   +   LP+ L+E +    VD
Sbjct: 68  AQGLAKSTRARRLSAVKQLFRFAYEDGRRDDNPALQIKGPGRDKRLPKTLSEDE----VD 123

Query: 140 NVLLHTSHETKWID--ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            +L   S   +     ARN+ ++ LLY  G+R++E +SL       D   + + GKG K 
Sbjct: 124 RLLASASSLGRKDSDRARNTCMMQLLYATGMRVTELVSLPVSAARGDPRMILVMGKGGKE 183

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF-------------Q 244
           R+VPL P  R+A   +         LNI+    +    K   P  F              
Sbjct: 184 RLVPLSPPAREATATW---------LNIRDATQKLAEKKGAAPSRFLFPSSGKLGHITRH 234

Query: 245 RY---IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           R+   I+++    G+ P   T HT+RH+FATHLL+ G DLRSIQ++LGH  +STT+IYT+
Sbjct: 235 RFYLLIKEISVQAGVDPSKVTPHTMRHAFATHLLARGADLRSIQTLLGHADISTTEIYTH 294

Query: 301 V 301
           V
Sbjct: 295 V 295


>gi|317476478|ref|ZP_07935727.1| tyrosine recombinase XerD [Bacteroides eggerthii 1_2_48FAA]
 gi|316907504|gb|EFV29209.1| tyrosine recombinase XerD [Bacteroides eggerthii 1_2_48FAA]
          Length = 316

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 144/286 (50%), Gaps = 14/286 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + Q L++E+ L+  T  +Y  D ++ L FL     E I +  +   +  +++ F +  
Sbjct: 18  RKYQQYLKLEKSLAPNTFDAYMTDLQKLLHFLE---GENIEVGNV---TPDDLQRFAAGL 71

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               I  RS  R LSGIKSF  +L             +   K    +P  L  ++    +
Sbjct: 72  HDIGIHPRSQARILSGIKSFFHFLTVADYLETDPSELLEGPKIGFKIPEVLTVEE----I 127

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D ++     + K    RN AIL  LY CGLR+SE  +L   ++  ++  ++++GKG K R
Sbjct: 128 DRIISAVDMDKKE-GQRNRAILETLYSCGLRVSELCNLKLSDLYFEEGFIKVEGKGSKQR 186

Query: 199 IVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VP+ P   K I +Y+  D     +    +  +F    G  ++  +    I++L    G+
Sbjct: 187 LVPISPRAIKEI-KYWLTDRNLGKIKKGYEDYVFLARWGNNISRIMVFHMIKELAEKTGI 245

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++
Sbjct: 246 TKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHID 291


>gi|120610000|ref|YP_969678.1| tyrosine recombinase XerD [Acidovorax citrulli AAC00-1]
 gi|120588464|gb|ABM31904.1| tyrosine recombinase XerD [Acidovorax citrulli AAC00-1]
          Length = 309

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 152/301 (50%), Gaps = 15/301 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  L +E GLS+ TL +Y  D   +  +L  +  +  T   +       ++A+ + R  
Sbjct: 20  FVDTLWLEDGLSRNTLAAYRRDLALYAQWLGEHVPD--TAGMLDATMEHHLQAYFAARHA 77

Query: 81  QKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           Q     S  R L+ ++ + ++ L++R+I  +  +  ++  ++   +P+ L+  Q      
Sbjct: 78  QTRAT-SANRRLTVLRRYFQWALRERRIAIDPTV-RLQAARQPLRVPKTLSAAQV----- 130

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL +   +  +  R+ A+L L+Y  GLR++E ++L   +    +  LR+ GKG K R+
Sbjct: 131 EALLQSPDTSTALGLRDRAMLELMYASGLRVTELVTLKTYHAGLAEGVLRVMGKGSKERL 190

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP      + +  Y D    D+    +   LF   RG  +   +F   +++  +  G+ +
Sbjct: 191 VPFGEVAAQWLQRYLDHARADILAGQRTDDLFVTRRGAGMTRAMFWVVVKKHAQSAGIHV 250

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HTLRH+FATHLL++G DLR +Q +LGH  +STT IYT+V  +     +  ++ Q H
Sbjct: 251 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARER----LKALHAQHH 306

Query: 319 P 319
           P
Sbjct: 307 P 307


>gi|325127525|gb|EGC50451.1| tyrosine recombinase XerC [Neisseria meningitidis N1568]
 gi|325133512|gb|EGC56175.1| tyrosine recombinase XerC [Neisseria meningitidis M13399]
 gi|325206779|gb|ADZ02232.1| tyrosine recombinase XerC [Neisseria meningitidis M04-240196]
          Length = 305

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 147/306 (48%), Gaps = 13/306 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+N+ +  G S+ T+ +Y  D  +    LA    E       + LS  +  A + +   
Sbjct: 13  YLENI-VREGKSEHTVAAYRRDLEELFALLAQMPSE-AEGGVPQDLSRRDFTAALRRLSQ 70

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  R+L R LS  + +  +L +R +       +++  K+   +P+AL ++    ++D 
Sbjct: 71  RGLNARTLARKLSSWRQYCVWLVERGLLHTDPAADIKPPKQPERVPKALPQEWLNRMLDL 130

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GKG K R V
Sbjct: 131 PV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQV 186

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           PL     +A+  Y    P     +    LF G  G  L+    Q+ + Q     G     
Sbjct: 187 PLTGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHV 243

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +YD+ HP 
Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAHPR 299

Query: 321 ITQKDK 326
             ++D+
Sbjct: 300 AKRQDE 305


>gi|329118159|ref|ZP_08246871.1| site-specific tyrosine recombinase XerC [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327465819|gb|EGF12092.1| site-specific tyrosine recombinase XerC [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 308

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 140/311 (45%), Gaps = 22/311 (7%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +   E       +L+ L  E G S  TL +   D  Q    L  + E          LS 
Sbjct: 14  MTPAEFTARSAEYLETLRSE-GRSPHTLAACRRDLAQLAKLLPEHAEP---------LSR 63

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            +  A + K       +RS+ R LS  + +  YL +  +   +    ++  K    LP+A
Sbjct: 64  HDFAAALKKLSQSGASERSMARKLSVWRRYADYLVRHGLLDANPAGRLKAPKLPQLLPKA 123

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++ +    L D      +     +DAR+ A+  LLYG GLR++EA +L   +++ ++  +
Sbjct: 124 VDAEPLNALFDRAACDDA-----LDARDLALFELLYGSGLRVAEAQALDVADVLIEEGWV 178

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            ++GKG K R VPL       +  Y    P       +  LF    G+ L     Q  +R
Sbjct: 179 GVRGKGGKHRQVPLTGQCATVLAAYL---PQRAAAAGETALFTNRLGRRLGIRQMQNRLR 235

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                 G P   + H LRHS+A+HLL +G  +R+IQ +LGH  L+ TQIYT ++      
Sbjct: 236 LWAVKNGSPQHISPHMLRHSYASHLLQSGAGIRAIQELLGHSDLAATQIYTKLDFAR--- 292

Query: 309 WMMEIYDQTHP 319
            + E+YD+ HP
Sbjct: 293 -LAEVYDRAHP 302


>gi|294085482|ref|YP_003552242.1| tyrosine recombinase XerD [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292665057|gb|ADE40158.1| tyrosine recombinase XerD [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 311

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 144/309 (46%), Gaps = 21/309 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +LQ L  +R  +  TL +Y  D       +          +T+   +  ++R  I   
Sbjct: 16  EGFLQALSADRASAANTLAAYRRDLNDVATIMQGID------KTLHNATVDDLRQAIHAW 69

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +++  RS+ R LS ++ F+ +L +  I  ++ +  + +       P++L E + + L+
Sbjct: 70  HLRRLSARSVARRLSALRQFMGWLVEDNIRIDNPMRWIDSPSVPAPAPKSLTEAEVIALL 129

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                  + E +    R  AIL + Y  GLR+SE + L       +  +L + GKG + R
Sbjct: 130 KAA---NALEPEAAAVRARAILEIFYATGLRVSEVVKLQVAQFRRNPESLLVTGKGGRER 186

Query: 199 IVPLLPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           +VPL  + + A+   +E  D     L  +   P+  G    P+    F   ++ L    G
Sbjct: 187 VVPLGDAAKTAVQYWIEIRDRHAAALMSDYLFPMGDG----PMTRHQFASLLKSLALAAG 242

Query: 256 L-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           + P   + H LRHSFATH+L+ G DLRS+Q++LGH  ++TTQIYT        D +  + 
Sbjct: 243 INPDRVSPHVLRHSFATHMLNRGADLRSLQTLLGHADITTTQIYTATRP----DRLAGLV 298

Query: 315 DQTHPSITQ 323
              HP  T+
Sbjct: 299 ASAHPLATK 307


>gi|330818124|ref|YP_004361829.1| Tyrosine recombinase XerD [Burkholderia gladioli BSR3]
 gi|327370517|gb|AEA61873.1| Tyrosine recombinase XerD [Burkholderia gladioli BSR3]
          Length = 392

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/299 (31%), Positives = 145/299 (48%), Gaps = 23/299 (7%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E GLSK TL +Y  D   F  +LA   E  + +     +S   + A+I+ R   K  
Sbjct: 111 LWLEHGLSKNTLDAYRRDLTLFAQWLAQTHEASLDV-----VSEPILTAYIAARSDGKA- 164

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R LS  + +  +  +         L + + K++   P  L+E Q   L+    + 
Sbjct: 165 -TSSNRRLSVFRRYYGWALREHRAAADPTLRVLSAKQAPRFPSTLSEGQVEALLGAPEVE 223

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           T+     +  R+  +L L+Y  GLR+SE ++L    +  +   +R+ GKG K R+VP   
Sbjct: 224 TA-----LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNDGVVRVMGKGSKERLVPF-G 277

Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ--LRRYLGLPLST 260
            V    +E Y  +  P  L       LF   RG+ +    F   I++  LR  +   LS 
Sbjct: 278 EVAHGWIERYLREARPALLGARASDALFVTARGEGMTRQQFWNIIKRHALRAEIRAHLSP 337

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
             HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++ Q HP
Sbjct: 338 --HTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARER----LRSLHAQHHP 390


>gi|326566125|gb|EGE16282.1| tyrosine recombinase XerD [Moraxella catarrhalis BC1]
          Length = 307

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 150/294 (51%), Gaps = 19/294 (6%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           + RGLS  T  +Y  D R  +         +++   +     +++R  +   +  K  +R
Sbjct: 30  LARGLSIATRNAYSQDVRLCI---------RLSDMPVNLWQPSDVRNHLMCLKDAKKSER 80

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S+ R+L+ +  F  +  +     ++   +++  K   +LP+ L+E++  +L+D   + + 
Sbjct: 81  SIARALASLCQFFLWQIESGYREDNPCESIKTPKLGKTLPKTLSEQEVSSLLDAPDISSV 140

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                   R+ A+L +LY CGLR+SE  SL+ +++      L + GKG+K+R++PL    
Sbjct: 141 R-----GLRDKAMLEVLYACGLRVSELTSLSLEHLNLTAGWLSVTGKGNKMRLIPLGEYA 195

Query: 207 RKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
             A+ EY  +     +       +F   +G  +    F   I++     G+  + + HTL
Sbjct: 196 LSALNEYLAVRGSLLIGKKDCQAVFLTEQGGYMTRHNFWHLIKKYALMAGINTAISPHTL 255

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           RH+FATHL+++G DLRS+Q +LGH  LSTTQIYT+V +      +  ++ + HP
Sbjct: 256 RHAFATHLVNHGADLRSVQLLLGHSDLSTTQIYTHVATTR----LQNLHAKHHP 305


>gi|285019429|ref|YP_003377140.1| tyrosine recombinase [Xanthomonas albilineans GPE PC73]
 gi|283474647|emb|CBA17146.1| probable tyrosine recombinase protein [Xanthomonas albilineans]
          Length = 324

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 145/309 (46%), Gaps = 23/309 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L     E+GL++ +L SY  D   F  +     +  +     RQ  +     +++ R
Sbjct: 29  QQFLDAAWTEQGLARQSLDSYRRDLEGFARWRDGVGDGLVGAD--RQALFN----YLAWR 82

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  RS  R LS +++F     +R    +     +   +   SLP+AL E Q     
Sbjct: 83  TELGYTQRSNARWLSSLRAFFALRLRRGQRGDDPTALLEPPRLPRSLPKALAESQI---- 138

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            + LL     T  +  R+ A+L L+Y  GLR+SE + L    +   Q  LR+ GKG K R
Sbjct: 139 -DALLAAPDTTAPLGLRDRAMLELMYAAGLRVSELVQLPANAVNLRQGVLRVTGKGSKER 197

Query: 199 IVPLLPSVRKAILEYYDLCPFDL-------NLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           +VPL    +  +  Y D     L         +  +PLF     +PL+   F   I++  
Sbjct: 198 LVPLGEESQHWLQCYLDTARSVLVAGQAVPARDGAVPLFIDAARRPLSRQQFWVLIKRYA 257

Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              G+ P+  + H LRHSFATHLL+ G DLR++Q +LGH  LSTTQIYT V  ++    +
Sbjct: 258 TLAGIDPMRISPHGLRHSFATHLLNRGADLRALQMLLGHSSLSTTQIYTLVAREH----L 313

Query: 311 MEIYDQTHP 319
             ++ + HP
Sbjct: 314 QTLHRKHHP 322


>gi|269123216|ref|YP_003305793.1| integrase family protein [Streptobacillus moniliformis DSM 12112]
 gi|268314542|gb|ACZ00916.1| integrase family protein [Streptobacillus moniliformis DSM 12112]
          Length = 299

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/291 (30%), Positives = 142/291 (48%), Gaps = 14/291 (4%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLS 93
           T++SY+ D  QF+ +L    +    I+   ++     R+FI+    + ++  RS+ R LS
Sbjct: 22  TVKSYKKDLEQFIEYL----KNNEGIEDFNKVEIFTFRSFIAYLNVELQVNKRSINRKLS 77

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            I++F KYL +     E+  + +   K    LP  L ++    L   + L      K   
Sbjct: 78  AIRTFFKYLLENDYIIENKAVYISTPKFEKPLPNFLTKEDIDKLRSVIKLE-----KITG 132

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            R+ AI+ LLY  GLR  E L LT   I      +R+ GKG+K RI     + +K I EY
Sbjct: 133 LRDRAIIELLYSSGLRSMELLDLTEYTIDLKNMEVRVIGKGNKERISFFSNNAQKYISEY 192

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            +    +     +  +F    G  L+    +R I +     G+    T H  RHSFAT L
Sbjct: 193 IERKKEEYKNYNKDAIFVNKDGNKLDSRSLRRLITKYSIKAGINKEVTPHIFRHSFATEL 252

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           L+ G D+R +Q +LGH  ++TTQ YT++ SKN    + + Y ++HP  T+K
Sbjct: 253 LNQGVDIRFVQELLGHSSIATTQFYTHI-SKNT---LKDAYMKSHPFATKK 299


>gi|71064633|ref|YP_263360.1| phage integrase [Psychrobacter arcticus 273-4]
 gi|71037618|gb|AAZ17926.1| probable phage integrase [Psychrobacter arcticus 273-4]
          Length = 312

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 129/238 (54%), Gaps = 13/238 (5%)

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           R+  R LS ++ F  ++    +  ++    +++ K    LP+ L E      VDN+L   
Sbjct: 82  RTQARMLSSLRQFYLWMIASNLREDNPCERIKSPKLGRPLPKDLAEAD----VDNLLAAP 137

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
              T  +  R+ A+L +LY CGLR+SE ++L+ + +  +   L+I GKG+K R+VPL   
Sbjct: 138 DSSTA-LGLRDKAMLEVLYACGLRVSELVNLSLEQVNLNSGWLQITGKGNKTRLVPLGEY 196

Query: 206 VRKAILEYYDLCPFDLNLNIQL----PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
              A+ +Y      DL  +++      +F   +G  +    F   +++  +   +  + +
Sbjct: 197 ASDALEDYLTHGRGDLIAHLKAGNCQAVFLTAQGGYMTRQNFWYLLKKYAKVASIDKALS 256

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            HTLRH+FATHLL++G DLRS+Q +LGH  LSTTQIYT+V +      + +++ + HP
Sbjct: 257 PHTLRHAFATHLLNHGADLRSVQLLLGHSNLSTTQIYTHVATAR----LQKLHAEHHP 310


>gi|168186262|ref|ZP_02620897.1| tyrosine recombinase XerD [Clostridium botulinum C str. Eklund]
 gi|169295813|gb|EDS77946.1| tyrosine recombinase XerD [Clostridium botulinum C str. Eklund]
          Length = 292

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 153/294 (52%), Gaps = 19/294 (6%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           ++ LSK T+++Y  D  +F  FL      K   + I       I A++   + +K  D S
Sbjct: 14  KKELSKNTIEAYNRDIIKFGKFL------KERDENILNADMVSIMAYVQTLKKEKKADSS 67

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--LLHT 145
           + RS+  I++F KYL +     ++ ++N    K   ++P  L        +D V   L+ 
Sbjct: 68  IIRSIVSIRNFYKYLIRIGKDVDNPLINYEVPKNKRNIPEVLT-------IDEVEKFLNA 120

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
               ++   R+ A+L L+Y  G+++SE L +T  +I      ++ +G  DK RI+P+   
Sbjct: 121 PECNEYKGIRDKAMLELMYATGMKVSELLRVTIFDINLKLCYVKCRGAKDKERIIPIGSY 180

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
               + EY ++       N ++ LF  +RG  +    F + +++  +  G+     ++TL
Sbjct: 181 AVNCLNEYLNVRDKMSAANSEI-LFCNLRGGKMTRQGFWKIVKKYAKEAGINKKIDSYTL 239

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           RHSFA HLL NG D++S+Q +LGH  ++TTQIY++++ +N    ++++Y + HP
Sbjct: 240 RHSFAVHLLQNGADIKSVQELLGHNTIATTQIYSSISKQNK---IVDVYKKAHP 290


>gi|158426110|ref|YP_001527402.1| tyrosine recombinase [Azorhizobium caulinodans ORS 571]
 gi|158332999|dbj|BAF90484.1| tyrosine recombinase [Azorhizobium caulinodans ORS 571]
          Length = 306

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 139/292 (47%), Gaps = 24/292 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L    +ERG S+ TL +Y  D   F  FL+      +    I   +  +IRA++++   
Sbjct: 10  FLDMQAVERGASRHTLDAYGRDLADFEDFLS------VRDHGIDAATTDDIRAYLAELTD 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   ++ R LS I+   ++L       +     +   K+   LP+ LN  Q   L+D 
Sbjct: 64  RGLKATTVARRLSAIRQLYRFLYAEGRRGDDPAAVLEGPKRGRPLPKVLNVDQVTRLID- 122

Query: 141 VLLHTSHETKWIDA---------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
               T+H+    D          R   ++ LLY  GLRISE +SL P      +  + + 
Sbjct: 123 ----TAHDRAGEDVSSPERLRRLRVVCLVELLYATGLRISELVSL-PAAAARARDVIMVT 177

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF-RGIRGKPLNPGVFQRYIRQL 250
           GKG K R+VPL    + A+  Y      +  L +   LF        L      R ++ L
Sbjct: 178 GKGSKERMVPLSGPAKAAMTAYL-AARAESGLAVSKWLFPTAAESGHLTRQHAARELKDL 236

Query: 251 RRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               G+P  + + H LRH+FA+HLL++G DLR +Q++LGH  +STTQIYT++
Sbjct: 237 AVAAGVPPQALSPHVLRHAFASHLLAHGADLRIVQTLLGHADVSTTQIYTHI 288


>gi|296114058|ref|YP_003627996.1| tyrosine recombinase XerD [Moraxella catarrhalis RH4]
 gi|295921752|gb|ADG62103.1| tyrosine recombinase XerD [Moraxella catarrhalis RH4]
 gi|326559455|gb|EGE09878.1| tyrosine recombinase XerD [Moraxella catarrhalis 7169]
 gi|326561283|gb|EGE11642.1| tyrosine recombinase XerD [Moraxella catarrhalis 46P47B1]
 gi|326565171|gb|EGE15362.1| tyrosine recombinase XerD [Moraxella catarrhalis 103P14B1]
 gi|326567828|gb|EGE17932.1| tyrosine recombinase XerD [Moraxella catarrhalis 12P80B1]
 gi|326568170|gb|EGE18252.1| tyrosine recombinase XerD [Moraxella catarrhalis BC8]
 gi|326572813|gb|EGE22798.1| tyrosine recombinase XerD [Moraxella catarrhalis CO72]
 gi|326573743|gb|EGE23701.1| tyrosine recombinase XerD [Moraxella catarrhalis O35E]
 gi|326574632|gb|EGE24568.1| tyrosine recombinase XerD [Moraxella catarrhalis 101P30B1]
          Length = 307

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 150/294 (51%), Gaps = 19/294 (6%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           + RGLS  T  +Y  D R  +         +++   +     +++R  +   +  K  +R
Sbjct: 30  LARGLSIATRNAYSQDVRLCI---------RLSDTPVNLWQPSDVRNHLMCLKDAKKSER 80

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S+ R+L+ +  F  +  +     ++   +++  K   +LP+ L+E++  +L+D   + + 
Sbjct: 81  SIARALASLCQFFLWQIESGYREDNPCESIKTPKLGKTLPKTLSEQEVSSLLDAPDISSV 140

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                   R+ A+L +LY CGLR+SE  SL+ +++      L + GKG+K+R++PL    
Sbjct: 141 R-----GLRDKAMLEVLYACGLRVSELTSLSLEHLNLTAGWLSVTGKGNKMRLIPLGEYA 195

Query: 207 RKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
             A+ EY  +     +       +F   +G  +    F   I++     G+  + + HTL
Sbjct: 196 LSALNEYLAVRGSLLIGKKDCQAVFLTEQGGYMTRHNFWHLIKKYALMAGINTAISPHTL 255

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           RH+FATHL+++G DLRS+Q +LGH  LSTTQIYT+V +      +  ++ + HP
Sbjct: 256 RHAFATHLVNHGADLRSVQLLLGHSDLSTTQIYTHVATTR----LQNLHAKHHP 305


>gi|239947482|ref|ZP_04699235.1| tyrosine recombinase XerD [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921758|gb|EER21782.1| tyrosine recombinase XerD [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 306

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/298 (31%), Positives = 151/298 (50%), Gaps = 28/298 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L  ER LSK ++ SY+ D   F  +LA     ++ I T        +R +I    T
Sbjct: 7   FLEMLLAERALSKNSILSYKRDLFDFQNYLAKQKLSELNITT------ENVRDWIEYLAT 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS+ R +S IKS+ ++L        + +LN+   K  N LP  L+  Q    + +
Sbjct: 61  NDLQARSINRKISTIKSYYEFLISENHIAFNPVLNVDLPKYQNKLPEILSIDQ----IKS 116

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-------LRIQGK 193
           +L H S +      R +A+++LLY  GLR+SE +SL   +I+ ++++         + GK
Sbjct: 117 LLEHCSQDNSPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNKTSKGEVRKIFSVLGK 176

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LF--RGIRGKPLNPGVFQRY 246
           G+K R++ +      +I +Y  L   D+ +N   P     LF    + G  +    F   
Sbjct: 177 GNKERVIVINEQAVISIAKY--LAIRDVFVNKAKPKNLIYLFPSSALAGY-MTRQNFAIL 233

Query: 247 IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           ++    Y GL P   + H LRHSFA+HLL  G DLR IQ +LGH  +STTQIYT++ +
Sbjct: 234 LKSAALYAGLNPEHISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQT 291


>gi|238020532|ref|ZP_04600958.1| hypothetical protein GCWU000324_00418 [Kingella oralis ATCC 51147]
 gi|237867512|gb|EEP68518.1| hypothetical protein GCWU000324_00418 [Kingella oralis ATCC 51147]
          Length = 294

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/293 (31%), Positives = 140/293 (47%), Gaps = 23/293 (7%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           +R  S  TL +YE + R+    L        T Q  R+    + +A   +   + +   S
Sbjct: 17  QRNRSPHTLIAYERELRELANLL------PATAQPARR----DFQAAFRQLSQRGLHPAS 66

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           L R+LS  + +  YL ++     + + +++ LKK   LPRA+ E+  L    N LL    
Sbjct: 67  LARALSAWRQYCDYLVRQGSLKTNPVQDIKALKKPQRLPRAI-ERDTL----NALLDQPA 121

Query: 148 ETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
           E+    A R+ AI  LLYG GLR++E   L   ++  D   L + GKG K R VPL  S 
Sbjct: 122 ESDDTLALRDQAIAELLYGSGLRLAELAGLNLADVYLDAGWLNVHGKGSKQRQVPLTQSS 181

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              + ++    P   +   +  LF    G  L      + +    +  G P   + H LR
Sbjct: 182 VALLQQWLAQRPAQPH---ETALFTTQHGTRLGSRQIAKRLDNWAQQHGSPQHISPHMLR 238

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HSFA HLL    D+R++Q +LGH  LS+TQIYT ++     D +  +YD+THP
Sbjct: 239 HSFAGHLLQASRDIRAVQDLLGHASLSSTQIYTKLDF----DHLAAVYDETHP 287


>gi|281602227|gb|ADA75211.1| Tyrosine recombinase xerD [Shigella flexneri 2002017]
          Length = 273

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 13/253 (5%)

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +++A +++R        S  R LS ++   +YL + K   +    ++ + K    LP+ L
Sbjct: 29  DLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDL 88

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +E Q   L+   L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R
Sbjct: 89  SEAQVERLLQAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVR 143

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYI 247
           + GKG+K R+VPL       +  Y +   P+ LN ++I + LF   R + +    F   I
Sbjct: 144 VIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRI 202

Query: 248 RQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +      G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++  
Sbjct: 203 KHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER- 261

Query: 307 GDWMMEIYDQTHP 319
              + +++ Q HP
Sbjct: 262 ---LRQLHQQHHP 271


>gi|255029340|ref|ZP_05301291.1| hypothetical protein LmonL_09813 [Listeria monocytogenes LO28]
          Length = 450

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 148/302 (49%), Gaps = 17/302 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q +   L  ER  S  T  +YE D    L F  F  E+ IT  T +Q+++ ++R ++
Sbjct: 6   KLEQQFFDYLHSERNYSVNTSTAYEND---LLDFRRFLNEQAIT--TYQQVTFLDVRIYL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++ + +     ++ R +S ++SF  +L +  +  E+    + + K    LP+    ++  
Sbjct: 61  TELKQKSFSRTTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEME 120

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L    +++  +ET  +  R+  +L +LYG G+R+SE   +   ++      + I+GKG+
Sbjct: 121 ALFQ--VVYEDNET--LTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGN 176

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVFQRYIRQL 250
           K R VP       AI +Y    P  +NL  +       L     G PL     +  + ++
Sbjct: 177 KERYVPFGAYAEDAITDY---LPERVNLMSRYKKSHDALLVNHYGDPLTTRGIRYCLTKI 233

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                L      H LRH+FAT LL+NG D+R++Q +LGH  LS+TQIYT+V  +    ++
Sbjct: 234 ISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKRAFKVYL 293

Query: 311 ME 312
            E
Sbjct: 294 YE 295


>gi|219848360|ref|YP_002462793.1| integrase family protein [Chloroflexus aggregans DSM 9485]
 gi|219542619|gb|ACL24357.1| integrase family protein [Chloroflexus aggregans DSM 9485]
          Length = 299

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 140/287 (48%), Gaps = 12/287 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L  ER +S  T  +Y  D  Q   FL     ++  I+    ++   + AF+   + 
Sbjct: 8   FLAYLADERKMSANTTAAYRTDLEQLCSFL-----QERGIEQWNDVNTEAMLAFVITLKE 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +K  + ++ R L+ IKSF  +L++R +        +   +     P+A+++ Q   L++ 
Sbjct: 63  KKYANSTVARRLAAIKSFFSFLRERNVVHHDPTEQLDAPRVDRFPPKAISQHQVDELLEL 122

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            L + S        R+ A+L +LY  G+R+SE ++L   +I     T+R  G+  + RI+
Sbjct: 123 PLQNNSGPEGL---RDKAMLEVLYATGMRVSELVALNIDDISFTSKTVRCLGRQGRERIL 179

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           PL  +   A+ EY D+    L  +       LF   RGK L    F   +++     GL 
Sbjct: 180 PLSEAALTALEEYLDIARPKLANHAHGNDEALFLNHRGKRLTRQGFWLILKEYADRAGLH 239

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              T H LRHSFA H L NG DLR +Q  LGH  ++TTQIYT++  +
Sbjct: 240 -DLTPHMLRHSFAAHQLRNGVDLRELQERLGHASIATTQIYTHLTEE 285


>gi|290894169|ref|ZP_06557140.1| integrase/recombinase XerC [Listeria monocytogenes FSL J2-071]
 gi|290556299|gb|EFD89842.1| integrase/recombinase XerC [Listeria monocytogenes FSL J2-071]
 gi|313609074|gb|EFR84788.1| tyrosine recombinase XerC [Listeria monocytogenes FSL F2-208]
          Length = 300

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 147/309 (47%), Gaps = 21/309 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q +L  L  ER  S  T  +YE D   F  FL      +  I+T +Q+++ ++R ++
Sbjct: 6   KLEQQFLDYLHSERNYSVNTSTAYENDLLDFRRFL-----NEQAIETYQQVTFLDVRIYL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++ + +     ++ R +S ++SF  +L +  + TE+    + + K    LP+    ++  
Sbjct: 61  TELKQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEME 120

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L   V      + + +  R+  +L +LYG G+R+SE   +   ++      + I+GKG+
Sbjct: 121 ALFQVVY----EDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGN 176

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVFQRYIRQL 250
           K R VP       AI +Y    P    L  +       L     G PL     +  + ++
Sbjct: 177 KERYVPFGVYAEDAITDY---LPKRTELMTRYKKSHDALLVNHYGDPLTTRGIRYCLTKI 233

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                L      H LRH+FAT LL+NG D+R++Q +LGH  LS+TQIYT+V  ++    +
Sbjct: 234 ISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----L 289

Query: 311 MEIYDQTHP 319
              Y + HP
Sbjct: 290 KSTYMKHHP 298


>gi|254247398|ref|ZP_04940719.1| Phage integrase [Burkholderia cenocepacia PC184]
 gi|124872174|gb|EAY63890.1| Phage integrase [Burkholderia cenocepacia PC184]
          Length = 316

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 148/322 (45%), Gaps = 22/322 (6%)

Query: 3   GNNLPEIVSFELLKERQN---WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
            +N  +  S  LL  R +   +   L +ERGL++ TL +Y  D   F  +LA   +  + 
Sbjct: 10  ADNDTDAASPALLASRASIDVFCDALWLERGLARNTLDAYRRDLALFSQWLAATHDAPLD 69

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
                      +  +I+ R   K    S  R LS  + +  +  +    +    L + + 
Sbjct: 70  -----SADEAMVTGYIAARSDGKA--TSSNRRLSVFRRYYGWAVREHRASADPTLRITSA 122

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K+    P  L+E Q   L+    + T      +  R+  +L L+Y  GLR+SE ++L   
Sbjct: 123 KQGARFPSTLSEAQVEALLGAPDIGTP-----LGLRDRTMLELMYASGLRVSELVTLKTV 177

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKP 237
            +  ++  +R+ GKG K R+VP    V    +E Y  D  P  L       LF   RG  
Sbjct: 178 EVGLNEGVVRVMGKGSKERLVPF-GEVAHGWIERYLRDARPALLGARAADALFVTARGDG 236

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    F   I++  +   +    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQI
Sbjct: 237 MTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQI 296

Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319
           YT+V  +     +  ++ Q HP
Sbjct: 297 YTHVARER----LRTLHAQHHP 314


>gi|313619210|gb|EFR90975.1| tyrosine recombinase XerC [Listeria innocua FSL S4-378]
          Length = 300

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 149/310 (48%), Gaps = 29/310 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L  ER  S+ T  +YE D   F  FL     E+  I+  +Q+++ ++R ++++ 
Sbjct: 9   KRFLDYLHSERNYSEHTSTAYENDLSDFRRFL----NEQAIIE-YQQVTFLDVRIYLTEL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + +     ++ R +S ++SF  +L +  + TE+    + + K    LP+    ++   L 
Sbjct: 64  KQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEMEALF 123

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             V      + + +  R+  IL +LYG G+R+SE   +   ++      + I+GKG+K R
Sbjct: 124 QVVY----EDNETLTLRDRVILEVLYGTGIRVSECAGIMLSDLDTSYQAILIRGKGNKER 179

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL---------PLFRGIRGKPLNPGVFQRYIRQ 249
            VP       AI +Y       L+  I+L          L     G PL     +  + +
Sbjct: 180 YVPFGAYAEDAITDY-------LSGRIELMTRFKKTHDALLINHYGDPLTTRGIRYCLTK 232

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           +     L      H LRH+FAT LL+NG D+R++Q +LGH  LS+TQIYT+V  ++    
Sbjct: 233 IISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH---- 288

Query: 310 MMEIYDQTHP 319
           +   Y + HP
Sbjct: 289 LKSTYMKHHP 298


>gi|289663723|ref|ZP_06485304.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289668605|ref|ZP_06489680.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 323

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 147/309 (47%), Gaps = 23/309 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L     E+G+++ TL+SY  D      + A      + I       Y  +RA     
Sbjct: 28  ERFLDRFWAEQGVARQTLESYRRDLEGLARWRAGAGGGLLGIDRAALFDYLRLRA----- 82

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  RS  R LS +++F     +  + ++     +   +   SLP+AL E Q    +
Sbjct: 83  -KANYSPRSTARLLSTLRAFYGLCLRDGMRSDDPTALIDPPQLPRSLPKALTESQ----I 137

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           + +L     +T     R+ A+L L+Y  GLR+SE ++L    +   Q  LR+ GKG K R
Sbjct: 138 EALLAAPEVDTP-AGLRDRAMLELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDR 196

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNI-------QLPLFRGIRGKPLNPGVFQRYIRQLR 251
           +VPL    +  +  Y       L  N        Q+PLF     +PL+   F   +++  
Sbjct: 197 LVPLGEESQHWLERYLRGARPLLAANKPVAAVDGQVPLFIDAARQPLSRQQFWALVKRYA 256

Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              G+ P + + H LRHSFATHLL++G DLR++Q +LGH  LSTTQIYT V  ++    +
Sbjct: 257 AVAGIDPATVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQH----L 312

Query: 311 MEIYDQTHP 319
            +++   HP
Sbjct: 313 QKLHASHHP 321


>gi|322381748|ref|ZP_08055702.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154136|gb|EFX46458.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 298

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 141/298 (47%), Gaps = 18/298 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L+ ER L+  T++SY+ D  Q+  FL+        I    +     +  +++  +     
Sbjct: 12  LQDERRLAPNTVESYKKDLAQYADFLS-----SEGILAWEETQRVHVITYMNNLKQLGRA 66

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             ++ R+L  I++   YL + ++ T      + + K    +P  L  ++    +DN LL 
Sbjct: 67  PATISRTLVSIRALYHYLIREQVMTLDPSGQVESPKAETKIPVILTVEE----MDN-LLG 121

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
             +       R+ A+L LLY  G+R+SE ++L   +I  D   +R  G G K RIVP+  
Sbjct: 122 VPNTGTSSGLRDKAMLELLYATGIRVSELITLNKGDIYADLGYVRCTGTGGKERIVPMGK 181

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
                I  Y +     L L    P   LF    G  +    F + +++     G+    T
Sbjct: 182 VATLWIQRYLNEAREAL-LKEGKPDKALFLNHIGTRMTRQGFWKMMKKYATEAGIHKEIT 240

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            HTLRHSFATHLL NG DLR++Q +LGH  LSTTQ YT V        M E+YD THP
Sbjct: 241 PHTLRHSFATHLLENGADLRAVQELLGHSDLSTTQRYTFVTKTK----MKEVYDLTHP 294


>gi|289705629|ref|ZP_06502018.1| tyrosine recombinase XerD [Micrococcus luteus SK58]
 gi|289557653|gb|EFD50955.1| tyrosine recombinase XerD [Micrococcus luteus SK58]
          Length = 338

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 144/315 (45%), Gaps = 32/315 (10%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L++L +ERGL+  TL +Y  D  ++  +L     E   ++    +    +  F+    T 
Sbjct: 36  LEHLAVERGLAANTLAAYRRDLERYRRWL-----EAHGVRAPADVDPGHVSGFLRALGTG 90

Query: 82  KIGDRSLK-----RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           + G R L      R L+ ++   ++     +T      ++   K  + LP+AL  +Q   
Sbjct: 91  EDGGRPLAVRSAARVLAAVRGLHRFWALEGLTPADPARDVHPPKPGDRLPKALPVEQVTA 150

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP------QNIMDD--QSTL 188
           L++ V + T         R+ A+L  LYG G RISE + L            DD  Q  +
Sbjct: 151 LLEAVPVDTP-----AGLRDRALLEFLYGTGARISEVVGLDVDDVVGLAQTGDDGGQPVV 205

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQ 244
           R+ GKG K R+VP+  S   A L+ +           +    P LF   RG  L+     
Sbjct: 206 RLFGKGSKERVVPIG-SYAAAALDAWLVRGRPTIMTGVTRSTPALFVNARGGRLSRQSAW 264

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +++     GL    + HTLRH FATHLL+ G D+R +Q +LGH  ++TTQ+YT V   
Sbjct: 265 AVLKRAAERAGLEADVSPHTLRHCFATHLLAGGADVRVVQELLGHASVTTTQVYTLVTV- 323

Query: 305 NGGDWMMEIYDQTHP 319
              D + E+Y   HP
Sbjct: 324 ---DSLREVYAAAHP 335


>gi|16800384|ref|NP_470652.1| hypothetical protein lin1316 [Listeria innocua Clip11262]
 gi|34222949|sp|Q92C75|XERC_LISIN RecName: Full=Tyrosine recombinase xerC
 gi|16413789|emb|CAC96547.1| codV [Listeria innocua Clip11262]
          Length = 300

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 149/310 (48%), Gaps = 29/310 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L  ER  S+ T  +YE D   F  FL     E+  I+  +Q+++ ++R ++++ 
Sbjct: 9   KRFLDYLHSERNYSEHTSTAYENDLSDFRRFL----NEQAIIE-YQQVTFLDVRIYLTEL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + +     ++ R +S ++SF  +L +  + TE+    + + K    LP+    ++   L 
Sbjct: 64  KQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEMEALF 123

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             V      + + +  R+  IL +LYG G+R+SE   +   ++      + I+GKG+K R
Sbjct: 124 QVVY----EDNETLTLRDRVILEVLYGTGIRVSECAGIMLSDLDTSYQAILIRGKGNKER 179

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL---------PLFRGIRGKPLNPGVFQRYIRQ 249
            VP       AI +Y       L+  I+L          L     G PL     +  + +
Sbjct: 180 YVPFGAYAEDAITDY-------LSGRIELMTRFKKTHDSLLINHYGDPLTTRGIRYCLTK 232

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           +     L      H LRH+FAT LL+NG D+R++Q +LGH  LS+TQIYT+V  ++    
Sbjct: 233 IISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH---- 288

Query: 310 MMEIYDQTHP 319
           +   Y + HP
Sbjct: 289 LKSTYMKHHP 298


>gi|169830786|ref|YP_001716768.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637630|gb|ACA59136.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 317

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 146/316 (46%), Gaps = 28/316 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L+ ER  S  T+ +Y+ D    L + A    +         +     R +++   
Sbjct: 7   GFLAYLQAERQASPRTITAYQKDLFAGLDYFARRRGKADAELRAGDIDLKLFRGYLAHLG 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +   ++ R ++  +SF +YL +      S +  M   +    LP  L  ++  TL++
Sbjct: 67  QSGLARSTIARKVAAWRSFFRYLVRENAVPASPLAGMSAPRLKKRLPGVLYPEEVGTLLE 126

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              L  +        R+ A+L +LY  GLR+SE + L   ++   Q+ +R+ GKG++ R+
Sbjct: 127 APDLSPT------GLRDRALLEMLYAGGLRVSELVGLDLADLELKQAYVRVLGKGNRERL 180

Query: 200 VPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPG----VFQRYIRQLRRY 253
           +PL     +A+  Y       L         LF   RG+ L       VF  Y++ L   
Sbjct: 181 LPLGGYAVEALKRYLAEGRPKLLGGKKTTAALFLNYRGERLTDRGVRLVFTNYLKGLAS- 239

Query: 254 LGLPLST----------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            G+P  T            H LRH FATHLL  G DLR++Q +LGH RLSTTQIYT V++
Sbjct: 240 -GVPGGTRFSGSADRQAGPHLLRHCFATHLLEAGADLRTVQELLGHARLSTTQIYTRVSA 298

Query: 304 KNGGDWMMEIYDQTHP 319
               D ++E+Y + HP
Sbjct: 299 ----DRLLEVYRRAHP 310


>gi|307132969|ref|YP_003884985.1| site-specific tyrosine recombinase [Dickeya dadantii 3937]
 gi|306530498|gb|ADN00429.1| site-specific tyrosine recombinase [Dickeya dadantii 3937]
          Length = 302

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 146/301 (48%), Gaps = 17/301 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L +ER LS LT  SY     Q  + +   +   I     + L    +RA +++ 
Sbjct: 12  EAFLRYLRVERQLSPLTQSSY---AHQLQVIIDMLSASGIA--DWQALDAAGVRAVVARG 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +   +   SL + LS ++SFL +L  R     +    +   K    LP+ ++  +   L+
Sbjct: 67  KRDGLNAASLAQRLSALRSFLDWLVGRGELKANPARGVPAPKAGRHLPKNMDVDEMSRLL 126

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D  L      +  +  R+ A+L ++YG GLR++E + L   ++  D   + + GKG K R
Sbjct: 127 DIDL------SDPLAVRDRAMLEVMYGAGLRLAELVGLDCGHVDLDSGEVWVMGKGSKER 180

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            +P+  +    +  +  L   D+       +F    GK ++    Q+   +     G+  
Sbjct: 181 KLPIGATAVTWLRNW--LAIRDIYAPEDDAIFISSLGKRISMRNVQKRFAEWGVKQGVNS 238

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++    +  +YD  H
Sbjct: 239 HVHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LASVYDAAH 294

Query: 319 P 319
           P
Sbjct: 295 P 295


>gi|319778432|ref|YP_004129345.1| Tyrosine recombinase XerD [Taylorella equigenitalis MCE9]
 gi|317108456|gb|ADU91202.1| Tyrosine recombinase XerD [Taylorella equigenitalis MCE9]
          Length = 297

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/299 (30%), Positives = 150/299 (50%), Gaps = 33/299 (11%)

Query: 16  KERQNWLQ----NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ----LS 67
           +E + W+     +L +E GLSK TL SY  D      FL    ++ I+I  I      L 
Sbjct: 3   EENKEWIDRFIDSLWLEEGLSKNTLNSYRLDLNSLNNFL----KDSISILKIDSDQLNLW 58

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
           + EI +  S + T      ++ R L+ ++ F  +  K+ +  +   L +   K    LP+
Sbjct: 59  FMEISS--SSKAT------TINRKLATVRKFYAWCIKQNLILKDPCLGISTRKTPQRLPK 110

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           +++E Q   L++   L T+        R+ A+L +LY  G+R+SE +++    I  D   
Sbjct: 111 SISESQVEELLNAPDLKTAS-----GLRDKAMLEILYATGMRVSELIAIKTNEISLDAGV 165

Query: 188 LRI-QGKGDKIRIVPLLPS----VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           +R+  GKG K R+VP+       ++K + E   L   D   +    +F    G  +    
Sbjct: 166 VRVTMGKGSKDRLVPMGEESEFYLKKYLSEGRPLLEKDKKNSF---VFLNRFGDCMTRQA 222

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           F + I++  +Y  + +  + H LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 223 FWQIIKKYAKYTSIKIPLSPHVLRHAFATHLLNHGADLRVVQMLLGHVDISTTQIYTHV 281


>gi|161869347|ref|YP_001598514.1| integrase/recombinase [Neisseria meningitidis 053442]
 gi|189030079|sp|A9M1G2|XERC_NEIM0 RecName: Full=Tyrosine recombinase xerC
 gi|161594900|gb|ABX72560.1| integrase/recombinase [Neisseria meningitidis 053442]
          Length = 305

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 147/306 (48%), Gaps = 13/306 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+N+ +  G S+ T+ +Y  D  +    LA    E       + LS  +  A + +   
Sbjct: 13  YLENI-VREGKSEHTVAAYRRDLEELFALLAQMPSE-AEGGVPQGLSRRDFTAALRRLSQ 70

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  R+L R LS  + +  +L +R +       +++  K+   +P+AL ++    ++D 
Sbjct: 71  RGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEWLNRMLDL 130

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GKG K R V
Sbjct: 131 PV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQV 186

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           PL     +A+  Y    P     +    LF G  G  L+    Q+ + Q     G     
Sbjct: 187 PLTGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHV 243

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +YD+ HP 
Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAHPR 299

Query: 321 ITQKDK 326
             ++D+
Sbjct: 300 AKRQDE 305


>gi|300087795|ref|YP_003758317.1| integrase family protein [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527528|gb|ADJ25996.1| integrase family protein [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 328

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/269 (32%), Positives = 130/269 (48%), Gaps = 24/269 (8%)

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI---------LNMRNLKK 121
           IR +I+    Q +   S+ R LS I+S  +YL + +I TES +         L+  ++K 
Sbjct: 71  IRGYIAWLLEQGVVKSSVVRKLSAIRSLFRYLLREEIITESPLPVTRKHGGRLSAFSIKL 130

Query: 122 SNSLPRALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
              LP  L        VD +  LL     +K +  R+ AI+ ++Y  GLRISE   +   
Sbjct: 131 DKRLPSFLT-------VDEMERLLEAPETSKPVGLRDKAIMEMIYAAGLRISELSDIKVS 183

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKP 237
            +      LR+ GKG K R+V +      A+ +Y +     L    +    LF   RG  
Sbjct: 184 QVDYYSRELRVTGKGQKERLVIIGQPAADAVKKYLEKARPKLAKAERATDSLFLNYRGGS 243

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+    Q+ I +  R  G+      H LRHSFATHLL  G DLR +Q +LGH  LSTTQI
Sbjct: 244 LSVRSMQKLILRYARIAGIRQEVHPHLLRHSFATHLLDGGADLRVVQELLGHSSLSTTQI 303

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
           YT+V+         ++Y  +HP   ++++
Sbjct: 304 YTHVSRNQA----RKVYLSSHPLAKEQER 328


>gi|269978219|ref|ZP_06185169.1| tyrosine recombinase XerD [Mobiluncus mulieris 28-1]
 gi|269933728|gb|EEZ90312.1| tyrosine recombinase XerD [Mobiluncus mulieris 28-1]
          Length = 319

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 149/310 (48%), Gaps = 22/310 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK- 77
           Q++L  L +ERG S  T+ +Y+ D ++++ +L     +     T+ Q++  ++  F+   
Sbjct: 18  QDFLNYLSVERGASPHTIAAYQRDLQRYVAYLQILGRD-----TLAQVTEVDLEGFVRAL 72

Query: 78  ----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
                    +G  S++R L+  +S+ +YL      + S   N+ +  K   LPR L E  
Sbjct: 73  GDGFASFPPLGSTSVRRCLAAARSWHRYL----FDSGSLGANVASSVKPAKLPRRLPETL 128

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQ 191
            L  ++ +L   S        R+ A+L  LY  G RISEA++L   +I    + + +R+ 
Sbjct: 129 NLEEMEALLAAASSPGDSNSLRDRALLEFLYASGARISEAMNLVLDDIDFETEPALVRLF 188

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQ 249
           GKG K RI  L     +A+  Y       L    Q    +F    GKP++       I+ 
Sbjct: 189 GKGRKERISMLGRQACQALQAYLVRVRPTLAEKGQSIGRVFLNTYGKPMSRQTAWAIIQA 248

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +   +      HTLRH FATHLL  G D+R +Q +LGH  ++TT+IYT V+ +     
Sbjct: 249 AAKRAQIDRPVHPHTLRHCFATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQ----M 304

Query: 310 MMEIYDQTHP 319
           ++E+Y   HP
Sbjct: 305 LLEVYASAHP 314


>gi|56420265|ref|YP_147583.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
 gi|56380107|dbj|BAD76015.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
          Length = 301

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 144/283 (50%), Gaps = 14/283 (4%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-I 83
           L+IE+  S  T+  Y  D R F  FL    +   ++Q +  ++ T +R FI  + T++ +
Sbjct: 14  LQIEKNYSLNTVDGYAYDLRCFENFL---IQHGYSVQ-LHDITKTHVRRFIQHQITKENV 69

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
             R++ R +S +KSF KY  K  +     ++ +   K  + LP  +    +L+ +  +  
Sbjct: 70  KPRTIYRRISCLKSFSKYCVKENLIDSDFMIGIDTPKTDSKLPTYM----SLSELRKLFH 125

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
               +   +  RN  +  LL   G+R SE + LT + I    +T+RI GKG K R++PL 
Sbjct: 126 FLEQDNSRMAMRNHLLFKLLATTGMRRSEIVELTWEQIDLSNNTIRIYGKGKKERLLPLH 185

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TA 262
           P V   I  Y +    +  L+   P+F    GK LNP    +  +++ +  GLP    + 
Sbjct: 186 PMVVPLIKSYMESLE-EYQLHPSQPVFLNKNGKKLNPRGLHKIFKEILQKAGLPPQRFSL 244

Query: 263 HTLRHSFATHLLSNGG---DLRSIQSILGHFRLSTTQIYTNVN 302
           H LRH+FAT L+       DLR++Q +LGH  L TTQ+YT+V+
Sbjct: 245 HHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVD 287


>gi|332304595|ref|YP_004432446.1| tyrosine recombinase XerC [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332171924|gb|AEE21178.1| tyrosine recombinase XerC [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 298

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 148/296 (50%), Gaps = 22/296 (7%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L+ ER L+  ++++Y+   RQF         + ++I +   LS   +R  ++  R Q + 
Sbjct: 18  LKYERNLAAKSIENYQ---RQFASIC-----QTLSISSWSALSVEHVRQVLNHARRQGLS 69

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            RS+   LS ++ +  YL + ++ + +    ++  K+   LP+ LN       VD +   
Sbjct: 70  PRSIALRLSALRGYCAYLVELEVLSSNPAKAVQAPKQGKPLPKQLN-------VDEMHQL 122

Query: 145 TSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
              +   + A R+ A+L L Y CGLR++E   L   ++ DD   LR+ GKG K R++P+ 
Sbjct: 123 LDFDDDSLLAIRDKAMLELTYSCGLRLAELADLNLNSLQDD-GQLRVMGKGSKERLLPVG 181

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
                 + ++  +   +L    +  LF     + ++     + ++   +   L      H
Sbjct: 182 KKALTCVGQWLKV-RGELADGNEPALFLSKHRRRISHRQIAKRMQLWAKQQHLDQDINPH 240

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            LRHSFATH+L + GDLR +Q +LGH  LSTTQ+YT++N ++    +  +YD  HP
Sbjct: 241 KLRHSFATHILESSGDLRGVQELLGHANLSTTQVYTHLNFQH----LASVYDTAHP 292


>gi|148651956|ref|YP_001279049.1| tyrosine recombinase XerD [Psychrobacter sp. PRwf-1]
 gi|148571040|gb|ABQ93099.1| tyrosine recombinase XerD [Psychrobacter sp. PRwf-1]
          Length = 312

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 127/238 (53%), Gaps = 13/238 (5%)

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           R+  R LS ++ F  ++   +   ++    ++  K   SLP+ L+E          LL  
Sbjct: 82  RTQARMLSSLRQFYLWMVGNERREDNPCERIKTPKIGRSLPKDLSENDV-----ESLLSA 136

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
              +  +  R+ A+L +LY CGLR+SE ++L+ + +  +   L+I GKG+K R+VPL   
Sbjct: 137 PDTSTALGLRDKAMLEVLYACGLRVSELMNLSLEQVNLNAGWLQITGKGNKTRLVPLGEY 196

Query: 206 VRKAILEYYDLCPFDLNLNIQ----LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
              A+ +Y      +L  +++      +F   +G  +    F   I++  +  G+    +
Sbjct: 197 ASDALDDYLTHARGELVAHLKSGNCQAVFLTTQGGYMTRQNFWYMIKKYAKQAGIQSDLS 256

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            HTLRH+FATHLL++G DLRS+Q +LGH  LSTTQIYT+V +      + ++++  HP
Sbjct: 257 PHTLRHAFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHVATAR----LQQLHEAHHP 310


>gi|83589876|ref|YP_429885.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC
           39073]
 gi|83572790|gb|ABC19342.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC
           39073]
          Length = 313

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 153/327 (46%), Gaps = 20/327 (6%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +P +   E L   + +L  L+ ER  S  T+ +Y  D  QF  F+A    ++     +  
Sbjct: 1   MPGVTFGEAL---EGFLLYLKGERQASPCTVDAYRADIEQFAAFVAGRAGQEAGPAAVDI 57

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
                   ++++   Q+    S+ R L+ +++F ++L +      S +  +   ++   L
Sbjct: 58  WMVRRYLGWLNQLGQQR---SSMNRKLAALRAFYRFLLRAGQVQSSPVALLSGPRREKRL 114

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P  L+  +   L+      +   T  +  R+ AIL  LY  G+R++E + +   ++    
Sbjct: 115 PGCLSHAEMEKLL------SIPATTPLGLRDRAILETLYASGIRVAELVGMDQDDLDLVA 168

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
              R+ GKG + R+VPL     KA+  Y      +L      P  R +    L   +  R
Sbjct: 169 GYARVLGKGRRERVVPLGRYAVKALENYLHRARPELAARRIPPEPRALFLNHLGGRLTTR 228

Query: 246 YIRQ-LRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            +R+ L  Y+    L    + HT+RH+FATHLL  G DLR +Q +LGH RL+TTQIYT++
Sbjct: 229 GVRERLSHYVEKAALRRGVSPHTIRHTFATHLLEGGADLRVVQELLGHIRLATTQIYTHI 288

Query: 302 NSKNGGDWMMEIYDQTHPSITQKDKKN 328
           +       + E+Y Q HP  ++ +  N
Sbjct: 289 SQSQ----LREVYRQFHPRASRDNIDN 311


>gi|313623983|gb|EFR94082.1| tyrosine recombinase XerC [Listeria innocua FSL J1-023]
          Length = 300

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 147/306 (48%), Gaps = 21/306 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L  ER  S+ T  +YE D   F  FL    E+ IT    +Q+++ ++R ++++ 
Sbjct: 9   KRFLDYLHSERNYSEHTSTAYENDLSDFRRFL---NEQAIT--EYQQVTFLDVRIYLTEL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + +     ++ R +S ++SF  +L +  + TE+    + + K    LP+    ++   L 
Sbjct: 64  KQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEMEALF 123

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             V      + + +  R+  IL +LYG G+R+SE   +   ++      + I+GKG+K R
Sbjct: 124 QVVY----EDNETLTLRDRVILEVLYGTGIRVSECAGIMLSDLDTSYQAILIRGKGNKER 179

Query: 199 IVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            VP       AI +Y       +  F    +    L     G PL     +  + ++   
Sbjct: 180 YVPFGAYAEDAITDYLSGRTELMTRFKKTHD---SLLINHYGDPLTTRGIRYCLTKIISK 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRH+FAT LL+NG D+R++Q +LGH  LS+TQIYT+V  ++    +   
Sbjct: 237 ASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----LKST 292

Query: 314 YDQTHP 319
           Y + HP
Sbjct: 293 YMKHHP 298


>gi|323339878|ref|ZP_08080147.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644]
 gi|323092751|gb|EFZ35354.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644]
          Length = 302

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 143/294 (48%), Gaps = 16/294 (5%)

Query: 19  QNWL----QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           + WL    Q L++ER  S+ T+ SY  D  +F  FL    +E   +++ + ++  ++ A+
Sbjct: 6   KEWLEQFKQYLKVERQYSEATITSYFEDLNEFCRFL----DESGGLKSFKDINNIDVHAY 61

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +S    +++   ++ R +S +++F ++L +     +     +   +    LP    E++ 
Sbjct: 62  MSWLYDRELKTTTVSRKISSLRAFYRFLVRNDKADQDPFAYVSLRRHPRRLPHFFYEREM 121

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
                N L         +  R++A+L  LY  G+R+SE + L  Q+I     ++ + GKG
Sbjct: 122 -----NALFQAVCGDDPLTVRDNALLENLYSTGMRVSECVGLKMQDIDFPMRSILVHGKG 176

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLR 251
            K R V     +  A+  Y++     +    Q     +F    G  L P      + ++ 
Sbjct: 177 KKDRYVQFGSYLDNALKAYFEKMRTPVMEKYQKKHDFVFVNHYGDQLTPAGVSYILDKIV 236

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
               L  +   H LRH+FATH+L+NG DLRS+Q +LGH  +STTQIYT+V  ++
Sbjct: 237 EKSSLTTTIHPHELRHTFATHMLANGADLRSVQELLGHSSISTTQIYTHVTPEH 290


>gi|332665189|ref|YP_004447977.1| Tyrosine recombinase xerC [Haliscomenobacter hydrossis DSM 1100]
 gi|332334003|gb|AEE51104.1| Tyrosine recombinase xerC [Haliscomenobacter hydrossis DSM 1100]
          Length = 330

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 147/312 (47%), Gaps = 32/312 (10%)

Query: 21  WLQNLE----IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           W++  E    +ER L+  T+++Y  D  +   +L    E  +    +R    T   A+++
Sbjct: 33  WIRGFEAYLLLERSLAGNTIEAYTRDIGKLAEYLGM-QERNLGPADVRAEDLTTFLAWLN 91

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           +     +   S  R LS +K+F KYL   +   +     +   +   S+P  L+      
Sbjct: 92  E---LGLSAPSQARLLSALKTFYKYLLLEEGIKDDPTALLEGPRLQRSIPSVLSYDDIQA 148

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           ++  + L T+        RN AIL +LY CGLR+SE   L   N+  D   LRI GKG+K
Sbjct: 149 MLVTIDLSTAQ-----GQRNRAILEILYACGLRVSELCDLRLSNLFLDVEFLRIIGKGNK 203

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYI 247
            RIVP+     K +  Y +          QLP         +F   RG  L+  +    +
Sbjct: 204 ERIVPIGADAIKHLNFYLE------GARKQLPQVKKGHENYVFLNRRGARLSRVMVFLIV 257

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++     G+    + HT RHSFATHLL  G DL++IQ +LGH  + TT+IYT++++    
Sbjct: 258 KEAATQAGIEQIVSPHTFRHSFATHLLEGGADLKAIQDMLGHESILTTEIYTHLDT---- 313

Query: 308 DWMMEIYDQTHP 319
           D++ E   + HP
Sbjct: 314 DYLRETILRFHP 325


>gi|282880564|ref|ZP_06289271.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1]
 gi|281305667|gb|EFA97720.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1]
          Length = 316

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 153/303 (50%), Gaps = 17/303 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L++ER  S  TL +Y+ D R    +L  Y E         QL   E+  F  +     IG
Sbjct: 19  LKLERNYSPHTLDAYQHDLR----WLLDYCENAGMHPKDMQLKDLEL--FAGQLHEHHIG 72

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R LSG++SF ++L       +     + + +    LP  L+ ++   + +++ L 
Sbjct: 73  PTSQARILSGVRSFYRFLVLDGRIEQDPTELLESPRLGEHLPEVLSTEEVDMIENSIDL- 131

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
               +K    RN AI+ +L+ CGLR+SE ++L   N+  ++  +R+ GKG K R+VP+  
Sbjct: 132 ----SKPEGQRNKAIIEVLFSCGLRVSELVNLKLSNLYLEEGFVRVMGKGSKERLVPISS 187

Query: 205 -SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
            ++R+    + D     +    +  +F   RGK L   +    +++     G+  + + H
Sbjct: 188 KAIRELQYWFVDRNLMKIQQGEEDYVFLNRRGKHLTRTMILIMLKRQAVAAGITKTISPH 247

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP-SIT 322
           TLRHSFAT LL  G DLR+IQ++LGH  + TT++Y ++++      + E   Q HP ++ 
Sbjct: 248 TLRHSFATELLKGGADLRAIQAMLGHESIGTTELYMHIDTTT----LREEILQHHPRNMK 303

Query: 323 QKD 325
           +KD
Sbjct: 304 EKD 306


>gi|209551174|ref|YP_002283091.1| site-specific tyrosine recombinase XerD [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209536930|gb|ACI56865.1| tyrosine recombinase XerD [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 317

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 161/328 (49%), Gaps = 39/328 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR--QLSYTEIRAFIS 76
           +++L+ +  ERG +  TLQSYE D      FL        T +++R  + +  ++ A+++
Sbjct: 10  ESFLEMMSAERGAAVNTLQSYERDLDDVHAFL--------TGRSVRLTEAASADLAAYLA 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               +     S  R L+ ++ F K+L    + T+     +   KK   LP+ +  ++   
Sbjct: 62  SLARKGFKASSQARRLAAMRQFYKFLYAEGLRTDDPTGILDAPKKGRPLPKTMGVEEVGK 121

Query: 137 LVDNVLLHTSHETKWIDARNSAI--------LYLLYGCGLRISEALSLTPQNIMDDQST- 187
           L+         E +  DA    +        L LLY  G+R+SE +SL P  ++D +   
Sbjct: 122 LLSQA------EAEAGDAAPGQLQRLRMLALLELLYATGMRVSELVSL-PARVLDQEGRF 174

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNP-G 241
           L I+GKG+K R+VPL  S   A+  Y  L   + N   + P     LF     +   P  
Sbjct: 175 LMIRGKGNKERLVPLSQSAISALKSYGRLLAAE-NAAAKNPQESPWLFPAASKEGYLPRQ 233

Query: 242 VFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           VF R ++ L    GL P   + H +RH+FA+HLL+NG DLR +Q +LGH  +STTQIYT+
Sbjct: 234 VFARDLKNLAIRAGLTPSMISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTH 293

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           V  +      ++   QTH  + ++ KK+
Sbjct: 294 VLEER-----LQQLVQTHHPLAKQAKKH 316


>gi|312963818|ref|ZP_07778289.1| Tyrosine recombinase [Pseudomonas fluorescens WH6]
 gi|311281853|gb|EFQ60463.1| Tyrosine recombinase [Pseudomonas fluorescens WH6]
          Length = 299

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 150/307 (48%), Gaps = 23/307 (7%)

Query: 17  ERQ--NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ERQ   +  +L  ER +S  TL++Y  D  + L +      EK  + + + L    +R+ 
Sbjct: 2   ERQLDAYCAHLRNERQVSPHTLEAYRRDLNKVLAYC-----EKQQVSSWKSLDIQALRSL 56

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I++   Q    RSL R LS ++    YL +  +        +   K    LP+ L+  +A
Sbjct: 57  IARLHQQGQSSRSLSRLLSAVRGLYHYLNREGLCDHDPANGLSPPKGERRLPKTLDTDRA 116

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           L L+D  +     E  ++  R+ AIL L Y  GLR+SE   L    +      +++ GKG
Sbjct: 117 LQLLDGAV-----EDDFLAHRDQAILELFYSSGLRLSELTGLNLDQLDLADGLVQVLGKG 171

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL-RR 252
            K R++P+    R+A+  +    P     N Q   +F   +G+ L P   Q  ++    R
Sbjct: 172 SKTRVLPVGRKAREALQLW---LPLRALANPQDDAVFISQQGRRLGPRAIQVRVKAAGER 228

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            LG  L    H LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  
Sbjct: 229 ELGQNLHP--HMLRHSFASHLLESSQDLRAVQELLGHSDIKTTQIYTHLDFQH----LAT 282

Query: 313 IYDQTHP 319
           +YD  HP
Sbjct: 283 VYDSAHP 289


>gi|325267781|ref|ZP_08134431.1| site-specific tyrosine recombinase XerC [Kingella denitrificans
           ATCC 33394]
 gi|324980662|gb|EGC16324.1| site-specific tyrosine recombinase XerC [Kingella denitrificans
           ATCC 33394]
          Length = 357

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 119/238 (50%), Gaps = 11/238 (4%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           +L R L+  + + K++++++    S    ++  +++  LPRA+  +    L+D       
Sbjct: 123 TLARKLTVWRQYAKFVQQKEAADASPAERLKAPRQAQRLPRAIERETLQYLLDQA----P 178

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                +  R+ A+  L YG GLR+SE  +L   +I  D+  + + GKG K R VPL    
Sbjct: 179 EAGDALAVRDHAVAELFYGSGLRLSELCALNLHDIWLDEGWVSVHGKGGKQRHVPL---T 235

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           + +I             + +  LF G  GK L      + ++      G   + T H LR
Sbjct: 236 QHSIAALRAWLARRTTADSESALFTGRYGKRLTTRQIAKRLQHWAAERGSLQTITPHMLR 295

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           HSFA HLL    DLR++Q +LGH  LS+TQIYT +++    D + ++YDQTHP   +K
Sbjct: 296 HSFAGHLLQASHDLRAVQDLLGHSSLSSTQIYTKLDA----DHLAQVYDQTHPRARRK 349


>gi|300787863|ref|YP_003768154.1| integrase/recombinase XerD [Amycolatopsis mediterranei U32]
 gi|299797377|gb|ADJ47752.1| integrase/recombinase XerD [Amycolatopsis mediterranei U32]
          Length = 310

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 143/308 (46%), Gaps = 25/308 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L +ERG ++ TL SY  D R++   L     + + +  I  ++   + AF +  R 
Sbjct: 15  YLDHLVVERGTARNTLDSYARDLRRYAAHL-----DGLGVAKIADVTSAHVTAFGAALRE 69

Query: 81  QKIGDRSLKRSLSG-----IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                R L  S +      ++   K+     +T  +    +R    +  LP+AL      
Sbjct: 70  GDDEHRPLAASSAARALVAVRGLHKFAHAEGLTEHNPAREVRPPTPAKRLPKALP----- 124

Query: 136 TLVDNVL--LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
             VD+VL  L T         R+ A+L LLY  G RISEA+ L   ++   + T+ + GK
Sbjct: 125 --VDDVLRLLETPPPDGERALRDRALLELLYSTGARISEAVGLDVDDVDGAERTVLLDGK 182

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLR 251
           G K R+VP+      A+  Y       L ++ +    LF   RG  L+     + ++   
Sbjct: 183 GGKQRLVPIGRPALAALHAYTVRARPALAVHGRGTAALFLNARGSRLSRQSAWQVLKDTA 242

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQ+YT V        + 
Sbjct: 243 GRAGITAVVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTVNT----LR 298

Query: 312 EIYDQTHP 319
           E+Y   HP
Sbjct: 299 EVYATAHP 306


>gi|307730818|ref|YP_003908042.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1003]
 gi|307585353|gb|ADN58751.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1003]
          Length = 314

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/279 (30%), Positives = 132/279 (47%), Gaps = 15/279 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL-SYTEIRAFISKRRTQKI 83
           L +E GLS+ TL +Y  D R F  +LA      +   +   L +Y+ +R        QK 
Sbjct: 33  LWLEHGLSRNTLDAYRRDLRLFSEWLAQSRNASLDTASEADLNAYSAVR--------QKD 84

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
              S  R LS  + +  +  +         L +R+ K+    P  L+E Q   L+    +
Sbjct: 85  KSTSANRRLSVFRRYYGWAVREHRAQVDPTLRIRSAKQPPRFPSTLSEAQVEALLGAPDI 144

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
            T      +  R+  +L L+Y  GLR++E ++L    +  ++  +R+ GKG K R++P  
Sbjct: 145 DTP-----LGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKERLIPFG 199

Query: 204 PSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
                 I  Y  D  P  L       LF   R + +    F   I++     G+    + 
Sbjct: 200 EEAHGWIERYLRDARPALLGARAADALFVTNRAEGMTRQQFWNIIKRHAAAAGVHAPLSP 259

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 260 HTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHV 298


>gi|307546449|ref|YP_003898928.1| site-specific tyrosine recombinase XerD [Halomonas elongata DSM
           2581]
 gi|307218473|emb|CBV43743.1| site-specific tyrosine recombinase XerD [Halomonas elongata DSM
           2581]
          Length = 300

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/281 (32%), Positives = 135/281 (48%), Gaps = 12/281 (4%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L  L +ERG S  TL +Y  D   +   LA          T+       +  ++ +RR  
Sbjct: 15  LDGLWLERGASDNTLAAYRHDLNTWQARLAGLG------ATLLAPPPRALPDWLDERREA 68

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
               RS  R LS ++ F  +           +  ++  + + SLP  L E +   L++  
Sbjct: 69  GYKLRSNARLLSSLRRFYHWALGEGRIEYDPLAEIKLPRVTPSLPNTLEEGEVERLLEAP 128

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
            + T      +  R+ A+L +LYG GLR++E + LT   +   Q  +R++GKGDK R+VP
Sbjct: 129 DVDTE-----LGLRDRAMLEVLYGAGLRVTELVGLTTDALNLRQGVVRVRGKGDKERLVP 183

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           L       +  Y       L  ++  P LF G     L    F   I+   R  G+  S 
Sbjct: 184 LGEEAVDWLSLYLRSARGALMRDVTRPALFPGRGDACLTRQAFWYRIKAHARSAGIDRSL 243

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + HTLRH+FATHLL++G +LR +Q +LGH  LSTTQIYT+V
Sbjct: 244 SPHTLRHAFATHLLNHGANLRVVQLLLGHSDLSTTQIYTHV 284


>gi|254824662|ref|ZP_05229663.1| integrase/recombinase XerC [Listeria monocytogenes FSL J1-194]
 gi|293593901|gb|EFG01662.1| integrase/recombinase XerC [Listeria monocytogenes FSL J1-194]
          Length = 300

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 146/309 (47%), Gaps = 21/309 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q +   L  ER  S  T  +YE D    L F  F  E+ IT  T +Q+++ ++R ++
Sbjct: 6   KLEQQFFDYLHSERNYSVNTSTAYEND---LLDFRRFLNEQAIT--TYQQVTFLDVRIYL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++ + +     ++ R +S ++SF  +L +  +  E+    + + K    LP+    ++  
Sbjct: 61  TELKQKSFSRTTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEME 120

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L   V      + + +  R+  +L +LYG G+R+SE   +   ++      + I+GKG+
Sbjct: 121 ALFQVVY----EDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGN 176

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVFQRYIRQL 250
           K R VP       AI +Y    P   NL          L     G PL     +  + ++
Sbjct: 177 KERYVPFGVYAEDAITDY---LPERANLMSHYKKSHDALLVNHYGDPLTTRGIRYCLSKI 233

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                L      H LRH+FAT LL+NG D+R++Q +LGH  LS+TQIYT+V  ++    +
Sbjct: 234 ISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----L 289

Query: 311 MEIYDQTHP 319
              Y + HP
Sbjct: 290 KSTYMKHHP 298


>gi|120404256|ref|YP_954085.1| site-specific tyrosine recombinase XerD [Mycobacterium vanbaalenii
           PYR-1]
 gi|119957074|gb|ABM14079.1| tyrosine recombinase XerD subunit [Mycobacterium vanbaalenii PYR-1]
          Length = 317

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 145/309 (46%), Gaps = 17/309 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L +L IERG++  TL SY  D R++   LA  +     +  + +   +E    +S R
Sbjct: 15  QGYLDHLAIERGVAANTLSSYRRDLRRYAEHLA--SRGVTDLAGVAEADVSEF--LVSLR 70

Query: 79  RTQK------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           R         +   S  R++  ++   ++     ITT      ++       LP++L+  
Sbjct: 71  RGDPDNGVVPLSAVSAARAVIAVRGLHRFAAAEGITTVDVAREVKPPTPGRRLPKSLSID 130

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + L L++        +   +  RN A+L LLY  G RISEA+ L   ++  +  ++ ++G
Sbjct: 131 EVLALLEAAGGDGEADGP-LTLRNRALLELLYSTGARISEAVGLDVDDVDTEARSVLLRG 189

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQL 250
           KG K R++P+      A+  Y      DL    +    +F   RG  L+     + ++  
Sbjct: 190 KGGKQRLIPIGRPAVSALDNYLVRGRPDLARRGRGTPAIFLNARGGRLSRQSAWQVLQDA 249

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+  + + H LRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V        +
Sbjct: 250 AERAGITATVSPHVLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTVTA----L 305

Query: 311 MEIYDQTHP 319
            E++   HP
Sbjct: 306 REVWAGAHP 314


>gi|325956667|ref|YP_004292079.1| integrase-recombinase [Lactobacillus acidophilus 30SC]
 gi|325333232|gb|ADZ07140.1| integrase-recombinase [Lactobacillus acidophilus 30SC]
 gi|327183490|gb|AEA31937.1| integrase-recombinase [Lactobacillus amylovorus GRL 1118]
          Length = 302

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 146/300 (48%), Gaps = 26/300 (8%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           + E   ++  L+ ER  SK T+ SY  D  +   F     +E       ++++  +I+ +
Sbjct: 5   MDELDQFISYLQFERYYSKKTISSYATDLHEAKKFW----QENGGFAGWKKVTERDIQIY 60

Query: 75  ISKRRTQKIGDRSLKRS-----LSGIKSFLKYLKKR---KITTESNILNMRNLKKSNSLP 126
           I     Q +GDR L RS     +S + SF ++L +R   KI     ++  R  KK   LP
Sbjct: 61  I-----QHLGDRKLARSSQARQMSSLHSFYRFLTRRRIVKIDPTQTVVIRRGEKK---LP 112

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           +   + +   + D++        K +  RN A+  L Y  G+R+SE   LT   I  D  
Sbjct: 113 QFFYQPEIKQVFDSL-----QGDKPLTVRNLALFELFYATGMRVSEVSGLTLPQIDLDLK 167

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
           T+ + GKG+K R V      + ++L Y +   P  L    +  +F   +GK ++    Q 
Sbjct: 168 TILVHGKGNKDRYVAFDDRTKNSLLNYLNNARPRLLKDKDEQHVFLSNQGKAISDRGIQY 227

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +++     G+      H LRH+FAT +L+NG D+RS+Q +LGH  LS TQIYT+V + +
Sbjct: 228 VMQKTFNQAGISGKVHPHELRHTFATAMLNNGADMRSVQELLGHSSLSATQIYTHVTTAH 287


>gi|33152918|ref|NP_874271.1| site-specific tyrosine recombinase XerC [Haemophilus ducreyi
           35000HP]
 gi|71153410|sp|Q7VKG8|XERC_HAEDU RecName: Full=Tyrosine recombinase xerC
 gi|33149143|gb|AAP96660.1| integrase/recombinase XerC [Haemophilus ducreyi 35000HP]
          Length = 304

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 158/311 (50%), Gaps = 23/311 (7%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           + Q +   L IE+ +S  TL +Y+   RQ L         +I     + +  + +R  ++
Sbjct: 11  QAQAYWDFLRIEKQVSPHTLTNYQ---RQLLAISEMLIAAQI--DDWQAVDASVVRWILT 65

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           +   Q +G +S+   L  ++ +  YL +R     +  + ++  K +  LP+ ++ ++   
Sbjct: 66  QSHKQGLGAKSIGLRLVVLRQWFAYLVQRHYVKVNPAVGIKAPKVARHLPKNIDAERMGQ 125

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA--LSLTPQNIMDDQSTLRIQGKG 194
           L+D  +   +      D R+ A++ L+Y  GLR++E   L L   +++D  + +R+ GKG
Sbjct: 126 LLDVEVDEPA------DIRDLAMMELMYSSGLRLAELQRLDLGDMDLID--AEVRLLGKG 177

Query: 195 DKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K RIVP+      A+  +  + P F+   N    LF   RG  L+    Q  +++    
Sbjct: 178 NKERIVPIGSRALTALQAWLTVRPSFNPQDN---ALFLNKRGGRLSHRSIQLAMQKWGER 234

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL      H LRHSFATHLL    DLR++Q +LGH  LSTTQIYT+++ ++    + +I
Sbjct: 235 QGLATRLHPHKLRHSFATHLLEASTDLRAVQELLGHSSLSTTQIYTHLDFQH----LAKI 290

Query: 314 YDQTHPSITQK 324
           YD +HP   +K
Sbjct: 291 YDASHPRARRK 301


>gi|88813548|ref|ZP_01128781.1| tyrosine recombinase [Nitrococcus mobilis Nb-231]
 gi|88789177|gb|EAR20311.1| tyrosine recombinase [Nitrococcus mobilis Nb-231]
          Length = 313

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 100/327 (30%), Positives = 155/327 (47%), Gaps = 32/327 (9%)

Query: 9   IVSFELLKERQ--------------NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT 54
           +++FE++ ER                +L  L +ERGLS  TL +Y  D    L+  A + 
Sbjct: 1   MLAFEVMPERAECNSLAADEERLIGGFLDTLWMERGLSAHTLSAYRSD----LVAYARWL 56

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
           E   T   + +       A++++R    +  R+  R LS ++ F +   +     E    
Sbjct: 57  ERHGT--GLLRAGRDGPTAYLAERVRSGVRPRTTARLLSTLRCFYRLQLRDGRLAEDPTA 114

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            + + K    LP  L+E++    V+ +L     +   I  R+  +L + Y  GLR+SE +
Sbjct: 115 QLDSPKLDRPLPATLSEQE----VEELLAAPDCQNP-IGLRDRTMLEVAYATGLRVSELV 169

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRG 232
           SL    +   Q   RI GK DK R+VPL     +A LE Y  D     L       LF  
Sbjct: 170 SLRLGQLNLRQGMARIIGKADKERLVPLGDEA-QAWLEDYLQDARSVLLTHPSASVLFIT 228

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
            RG+ +    F   I+   +  G+    + HTLRHSFATHLL++G DLR +Q +LGH  L
Sbjct: 229 RRGEAMTRQAFWYRIKYYAQVAGISKPLSPHTLRHSFATHLLNHGADLRVVQLLLGHSDL 288

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHP 319
           +TTQIYT+V  +     + E++ + HP
Sbjct: 289 TTTQIYTHVARQR----LQELHARHHP 311


>gi|310815561|ref|YP_003963525.1| phage integrase family protein [Ketogulonicigenium vulgare Y25]
 gi|308754296|gb|ADO42225.1| phage integrase family protein [Ketogulonicigenium vulgare Y25]
          Length = 313

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 144/299 (48%), Gaps = 27/299 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR- 78
            +L+    E G ++ TL +Y  D + F  +LA     K+   T+ Q    +   F + + 
Sbjct: 7   TFLEAQAAELGAARNTLLAYGRDLQDFAAWLA---RRKLDFLTLDQADIEDYLTFCADQG 63

Query: 79  --RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              + +    +  R LS ++   ++       T++  + ++   K+ +LP  LNE +   
Sbjct: 64  LSPSTRARRPTRARRLSAVRQLFRFAFDEGWRTDNPSIRLKGATKARTLPETLNEDEVDR 123

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+D     ++   +    RN+ +L LLY  G+R+SE ++L       D   L ++GKG K
Sbjct: 124 LLDAARAASAARPR-EALRNTCLLELLYATGMRVSELVTLPVAAARGDPRMLLVRGKGGK 182

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-------------LNPGVF 243
            R+VPL P  R A++E+          + +    R   G+P             L    F
Sbjct: 183 ERLVPLSPPARTAMVEWL------AQRDTEQEALRKAGGQPSRFLFPSHGADGHLTRQHF 236

Query: 244 QRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              ++ L    G+ P   + H LRH+FATHLL+NG DLR+IQ++LGH  ++TT+IYT+V
Sbjct: 237 LVILKDLAVLAGISPARVSPHKLRHAFATHLLANGADLRAIQTMLGHADIATTEIYTHV 295


>gi|254466241|ref|ZP_05079652.1| phage integrase [Rhodobacterales bacterium Y4I]
 gi|206687149|gb|EDZ47631.1| phage integrase [Rhodobacterales bacterium Y4I]
          Length = 313

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/294 (31%), Positives = 145/294 (49%), Gaps = 24/294 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L     E G S+ TL +Y  D +    +L   + +  T       S  +I A++    
Sbjct: 13  TFLDAQAAETGASQNTLLAYGRDLKDLTAWLEHRSLDFSTA------SQDDIEAYLISCD 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q +   +  R LS +K   ++  +     ++  + +R   +   LP+ L     +  VD
Sbjct: 67  AQGLARSTRARRLSAVKQIYRFAFEEGWRQDNPAIQIRGPGREKRLPKTLE----VIEVD 122

Query: 140 NVLLHTSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
             LL  + +T   +A   RN+ ++ LLY  G+R++E +SL       D   L I GKG K
Sbjct: 123 R-LLEAARQTGRSEADRLRNTCLMELLYATGMRVTELVSLPVSAARGDPRMLLILGKGGK 181

Query: 197 IRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGI---RGKP--LNPGVFQRYIR 248
            R+VPL P  R+A+ ++    D    +  L    P  R +   RGK   L    F   I+
Sbjct: 182 ERMVPLSPPAREALAQWLLVRDAAEDERELKGN-PASRFLFPSRGKSGHLTRHRFYLLIK 240

Query: 249 QLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +L    GL P   T HTLRH+FATHLL+NG DLR+IQ++LGH  ++TT+IYT+V
Sbjct: 241 ELAVTGGLSPDKVTPHTLRHAFATHLLANGADLRAIQALLGHADIATTEIYTHV 294


>gi|192288937|ref|YP_001989542.1| tyrosine recombinase XerD [Rhodopseudomonas palustris TIE-1]
 gi|192282686|gb|ACE99066.1| tyrosine recombinase XerD [Rhodopseudomonas palustris TIE-1]
          Length = 339

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 140/295 (47%), Gaps = 25/295 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  +  E+G S  TL +Y  D      FL   +  +++I +        +R++++    
Sbjct: 37  FLDMIAAEQGASANTLDAYRRDLADLSHFL---SRRRLSIGSA---DTAALRSYLADLDN 90

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     S+ R LS ++   ++L   +I  +     +   K+  SLP+ L+    +  VD 
Sbjct: 91  RGFATSSVARRLSALRHLFRFLLSERIRADDPAAILAGPKRGRSLPKVLS----IADVDR 146

Query: 141 VLLHTSHETKWID-------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           +L     E    +       AR + +L +LY  GLR+SE +SL       D   + ++GK
Sbjct: 147 LLACARQEIDAAEGGARLRAARLNCLLEVLYATGLRVSELVSLPLSAARRDARMIVVRGK 206

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR------GIRGKPLNPGVFQRYI 247
           GDK R+VPL    ++A+  Y +            P  +      G  G  L    F R +
Sbjct: 207 GDKERLVPLNAGAKQAMARYLEEVAVATKETKGAPASKWLFPSFGESGY-LTRQHFARDL 265

Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + L    GL P   + H LRH+FA+HLL NG DLR +Q++LGH  +STTQIYT+V
Sbjct: 266 KDLAARAGLSPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHV 320


>gi|149908511|ref|ZP_01897173.1| tyrosine recombinase [Moritella sp. PE36]
 gi|149808345|gb|EDM68282.1| tyrosine recombinase [Moritella sp. PE36]
          Length = 333

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/321 (28%), Positives = 162/321 (50%), Gaps = 23/321 (7%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT--IQTIRQLS 67
           +  +LLK  + +L+ +  ER LS  T+++Y    R+ LI  A   E+ +T  I   R L 
Sbjct: 27  LPVQLLKPIERFLRYITSERQLSLHTVRNY----RRHLILFA---EQMLTLPITEWRALD 79

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
            +++R   +      +  RSL   LS ++SF  YL  +   T +    +   ++   LP+
Sbjct: 80  ASQVRKLATLNHKLGLSPRSLATKLSALRSFCDYLVLQGDLTANPAKGVSAPRQHKPLPK 139

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMD 183
            L+  +      N LL  S+  +  D     R+ A++ L+Y  GLR+ E ++L   ++  
Sbjct: 140 NLDVDEI-----NQLLSVSNAVESDDPFLVLRDKAMMELMYSAGLRLDELVNLDLTDVKL 194

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
            + T+R+ GKG+K R +P+  S+    L+ +     +   N Q  LF     + ++    
Sbjct: 195 REKTMRVIGKGNKQRQLPI-GSIAITALQAWLAVRGEYADNAQPALFVSQLRRRISHRSV 253

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           Q  + +  +   L      H LRHSFATH+L + GDLR++Q +LGH  +STTQIYT+++ 
Sbjct: 254 QSRMAKWGQQQTLTSHVNPHKLRHSFATHMLESSGDLRAVQELLGHANISTTQIYTSLDF 313

Query: 304 KNGGDWMMEIYDQTHPSITQK 324
           ++    + ++YD  HP   +K
Sbjct: 314 QH----LAKVYDAAHPRAKKK 330


>gi|161729088|ref|NP_220744.2| site-specific tyrosine recombinase XerD [Rickettsia prowazekii str.
           Madrid E]
 gi|34223091|sp|Q9ZDG8|XERD_RICPR RecName: Full=Tyrosine recombinase xerD
 gi|292571969|gb|ADE29884.1| Tyrosine recombinase XerD [Rickettsia prowazekii Rp22]
          Length = 311

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/298 (31%), Positives = 152/298 (51%), Gaps = 28/298 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT--EIRAFISKR 78
           +L+ L  ER LSK ++ SY+ D   F  +LA         Q I +L+ T   IR +I   
Sbjct: 7   FLEMLLAERALSKNSILSYKRDLLDFQHYLA--------AQKISELNITTGNIRKWIEYL 58

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            +  +  RS+ R +S IKS+  +L     T  + +LN+   K  N LP  L+  Q    +
Sbjct: 59  ASNNLHARSINRKISTIKSYYAFLISENHTKFNPVLNIDLPKYQNKLPIILSIDQ----I 114

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-------LRIQ 191
             +L + S +      R +A++ LLY  GLR+SE +SL   +I+ + ++         + 
Sbjct: 115 KLILEYCSKDNTPEGIRLNAMINLLYASGLRVSELVSLKLADILTNNTSKGTVRKIFSVL 174

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-----IQLPLFRGIRGKPLNPGVFQRY 246
           GKG+K R++ +      +I++Y ++  F +N       I L     + G  +    F   
Sbjct: 175 GKGNKERVIVINDQAVLSIIKYLEIRDFFINKAKSKNLIYLFPSSAVAGY-MTRQNFAIL 233

Query: 247 IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           ++ +  Y GL P   + H LRHSFA+HLL  G DLR IQ +LGH  +STTQIYT++++
Sbjct: 234 LKSVALYTGLNPEHVSPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLHT 291


>gi|39933583|ref|NP_945859.1| tyrosine recombinase XerD [Rhodopseudomonas palustris CGA009]
 gi|39647429|emb|CAE25950.1| site-specific integrase/recombinase XerD [Rhodopseudomonas
           palustris CGA009]
          Length = 338

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 143/295 (48%), Gaps = 26/295 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  +  E+G S  TL +Y  D      FL   +  +++I +        +R++++    
Sbjct: 37  FLDMIAAEQGASANTLDAYRRDLADLSHFL---SRRRLSIGSA---DTAALRSYLADLDN 90

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     S+ R LS ++   ++L   +I  +     +   K+  SLP+ L+    +  VD 
Sbjct: 91  RGFATSSVARRLSALRHLFRFLLSERIRADDPAAILAGPKRGRSLPKVLS----IADVDQ 146

Query: 141 VLLHTSHETKWID-------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           +L     E    +       AR + +L +LY  GLR+SE +SL       D   + ++GK
Sbjct: 147 LLACARQEIDAAEGGARLRAARLNCLLEVLYATGLRVSELVSLPLSAARRDARMIVVRGK 206

Query: 194 GDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYI 247
           GDK R+VPL    ++A+  Y +       P D      L P F G  G  L    F R +
Sbjct: 207 GDKERLVPLNAGAKQAMARYLEEMAAAKAPKDGPAPKWLFPSF-GESGY-LTRQHFARDL 264

Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + L    GL P   + H LRH+FA+HLL NG DLR +Q++LGH  +STTQIYT+V
Sbjct: 265 KDLAARAGLAPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHV 319


>gi|223986264|ref|ZP_03636278.1| hypothetical protein HOLDEFILI_03588 [Holdemania filiformis DSM
           12042]
 gi|223961759|gb|EEF66257.1| hypothetical protein HOLDEFILI_03588 [Holdemania filiformis DSM
           12042]
          Length = 304

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 136/284 (47%), Gaps = 13/284 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + I+   S+ T+  Y  D  ++  FLA     +  I  I Q+    +  ++ + 
Sbjct: 8   RQYLIYISIQFPKSEKTIAGYRNDLSRYFQFLA-----QKEIDRIDQIDSAMLEEYV-RV 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S+  +++ I+ F ++L  R          +  L+++ SLP      +    +
Sbjct: 62  LARDHAAASVNHAITAIRGFHQFLAFR-FDELDPAEYLEQLQRTQSLPVYCTRDE----I 116

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           + ++    H  K  D R  AI  LLYGCGLR+SE  +LT   +  +   LRI GKG+K R
Sbjct: 117 EKIMAQFGHSPK--DIRWHAIAELLYGCGLRVSECAALTMNQVDLELGMLRIWGKGNKER 174

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VP+     K + EY D             LF    GK       +  I+ +    G+  
Sbjct: 175 LVPMPKQTIKIVREYVDTVRPLYQKKPTSWLFITRLGKKTTTASIESMIKSVCIQAGIQK 234

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             T H LRH++ATH+L  G DLRS+Q +LGH  ++TTQIYT+++
Sbjct: 235 PITPHKLRHTYATHMLEGGADLRSVQELLGHSDITTTQIYTHID 278


>gi|114570821|ref|YP_757501.1| phage integrase family protein [Maricaulis maris MCS10]
 gi|114341283|gb|ABI66563.1| phage integrase family protein [Maricaulis maris MCS10]
          Length = 321

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 140/296 (47%), Gaps = 33/296 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  +  ERG S  TL +Y    R+ L+ +A     +++ + +   +  ++   ++    
Sbjct: 19  FLDMMAAERGASPNTLDAY----RRDLVDVA----ARLSSRNLEAATTPDLEHVLASMAA 70

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +   +  R LS IK F ++L    +  ++    +R  K+   LP+ L E      VD 
Sbjct: 71  DGLAASTAARRLSAIKRFYRFLLSDGVREDNPATPLRAPKQGRPLPKILTEDD----VDR 126

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +    S  +     R  A++ LLY  GLR++E +SL     +  +  ++I GKG + R+V
Sbjct: 127 LFDAASGLSGPAGLRTRALMELLYAGGLRVTELVSLPLGAFVRAERCIQITGKGGRERLV 186

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP--------------LNPGVFQRY 246
           PL  +  +A+  Y       +     LP+ R   GK               L    F + 
Sbjct: 187 PLTEAALEAVAAY------KVVREAHLPVDRTKSGKAARYLFPSRTAKTGHLTRERFAQI 240

Query: 247 IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + +L    GL P   + H LRH+FATHLL+ G DLRS+Q +LGH  +STTQIYT+V
Sbjct: 241 LSELTLAAGLDPAKVSPHVLRHAFATHLLARGADLRSVQILLGHADVSTTQIYTHV 296


>gi|3860920|emb|CAA14820.1| INTEGRASE/RECOMBINASE XERD (xerD) [Rickettsia prowazekii]
          Length = 335

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/298 (31%), Positives = 152/298 (51%), Gaps = 28/298 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT--EIRAFISKR 78
           +L+ L  ER LSK ++ SY+ D   F  +LA         Q I +L+ T   IR +I   
Sbjct: 31  FLEMLLAERALSKNSILSYKRDLLDFQHYLA--------AQKISELNITTGNIRKWIEYL 82

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            +  +  RS+ R +S IKS+  +L     T  + +LN+   K  N LP  L+  Q    +
Sbjct: 83  ASNNLHARSINRKISTIKSYYAFLISENHTKFNPVLNIDLPKYQNKLPIILSIDQ----I 138

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-------LRIQ 191
             +L + S +      R +A++ LLY  GLR+SE +SL   +I+ + ++         + 
Sbjct: 139 KLILEYCSKDNTPEGIRLNAMINLLYASGLRVSELVSLKLADILTNNTSKGTVRKIFSVL 198

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-----IQLPLFRGIRGKPLNPGVFQRY 246
           GKG+K R++ +      +I++Y ++  F +N       I L     + G  +    F   
Sbjct: 199 GKGNKERVIVINDQAVLSIIKYLEIRDFFINKAKSKNLIYLFPSSAVAGY-MTRQNFAIL 257

Query: 247 IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           ++ +  Y GL P   + H LRHSFA+HLL  G DLR IQ +LGH  +STTQIYT++++
Sbjct: 258 LKSVALYTGLNPEHVSPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLHT 315


>gi|325204823|gb|ADZ00277.1| tyrosine recombinase XerC [Neisseria meningitidis M01-240355]
          Length = 301

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 126/244 (51%), Gaps = 11/244 (4%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +G+R+L R LS  + +  +L KR +       +++  K+   +P+AL ++     ++ +L
Sbjct: 69  LGERTLARKLSSWRQYCVWLVKRGLMHADPTADIKPPKQPERIPKALPQE----CLNQML 124

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
                ++  +  R+ A+  L+YG GLR+SE   L   ++  D+  +R+ GKG K R VPL
Sbjct: 125 DLPVDDSDALALRDHALFELMYGSGLRLSEIHGLDTGDVWLDEGWVRVTGKGRKQRQVPL 184

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
                +A+  Y    P     +    LF G  G  L+    Q+ +       G     + 
Sbjct: 185 TGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLESWAAQNGDGRHISP 241

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           H +RHS+A+HLL +  D+R++Q +LGH  LSTTQIYT ++     D +  +YD+ HP   
Sbjct: 242 HMMRHSYASHLLQSSRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAHPRAK 297

Query: 323 QKDK 326
           +++K
Sbjct: 298 RQEK 301


>gi|307700994|ref|ZP_07638019.1| site-specific tyrosine recombinase XerD [Mobiluncus mulieris
           FB024-16]
 gi|307613989|gb|EFN93233.1| site-specific tyrosine recombinase XerD [Mobiluncus mulieris
           FB024-16]
          Length = 319

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 149/310 (48%), Gaps = 22/310 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK- 77
           Q++L  L +ERG S  T+ +Y+ D ++++ +L     +     T+ Q++  ++  F+   
Sbjct: 18  QDFLNYLSVERGASPHTIAAYQRDLQRYVAYLQILGRD-----TLAQVTEIDLEGFVRAL 72

Query: 78  ----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
                    +G  S++R L+  +S+ +YL      + S   N+ +  K   LPR L E  
Sbjct: 73  GDGFASFPPLGSTSVRRCLAAARSWHRYL----FDSGSLGANVASSVKPAKLPRRLPETL 128

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQ 191
            L  ++ +L   S        R+ A+L  LY  G RISEA++L   +I    + + +R+ 
Sbjct: 129 NLEEMEALLAAASSPGDSNSLRDRALLEFLYASGARISEAMNLVLDDIDFETEPALVRLF 188

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQ 249
           GKG K RI  L     +A+  Y       L    Q    +F    GKP++       I+ 
Sbjct: 189 GKGRKERISMLGHQACQALQAYLVRVRPTLAEKGQSRGRVFLNTYGKPMSRQTAWAIIQA 248

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +   +      HTLRH FATHLL  G D+R +Q +LGH  ++TT+IYT V+ +     
Sbjct: 249 AAKRAQIDRPVHPHTLRHCFATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQ----M 304

Query: 310 MMEIYDQTHP 319
           ++E+Y   HP
Sbjct: 305 LLEVYASAHP 314


>gi|221199203|ref|ZP_03572247.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2M]
 gi|221206600|ref|ZP_03579612.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2]
 gi|221173255|gb|EEE05690.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2]
 gi|221180488|gb|EEE12891.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2M]
          Length = 316

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 141/297 (47%), Gaps = 19/297 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E GL++ TL +Y  D   F  +LA   +  +          T +  +I+ RR  K  
Sbjct: 35  LWLEHGLARNTLDAYRRDLTLFSQWLAATHDAALDAA-----DETMLTGYIAARRDGKA- 88

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R LS  + +  +  +    +    L + + K++   P  L+E Q   L+    + 
Sbjct: 89  -TSSNRRLSVFRRYYGWAVREHRASADPTLRIASAKQAARFPSTLSEAQVEALLGAPDIA 147

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           T      +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+VP   
Sbjct: 148 TP-----LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPF-G 201

Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            V    +E Y  +  P  L       LF   RG  +    F   I++  +   +    + 
Sbjct: 202 EVAHGWIERYLREARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSP 261

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++ Q HP
Sbjct: 262 HTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER----LRTLHAQHHP 314


>gi|225375588|ref|ZP_03752809.1| hypothetical protein ROSEINA2194_01213 [Roseburia inulinivorans DSM
           16841]
 gi|225212567|gb|EEG94921.1| hypothetical protein ROSEINA2194_01213 [Roseburia inulinivorans DSM
           16841]
          Length = 286

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 140/285 (49%), Gaps = 12/285 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            N++Q L  E+  S+ T  SYE D ++ +++L  +  ++I   T   L+     +++ + 
Sbjct: 8   HNFIQYLHQEKQTSENTEVSYERDLKKMILYLTAHGVDRIDAVTPEVLN-----SYVIEL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +   ++ RS++ +K+F  Y +  + T+      ++  K     P  L  +Q     
Sbjct: 63  EQSGLKPATVSRSVASMKAFFHYEELEQRTSADPAFELKAPKVEKKAPTILTTEQT---- 118

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            N LL    +      R+ A+L LLY  G+R+SE +SL   ++  D   +       K R
Sbjct: 119 -NRLLAQPKDNSAKGLRDKAMLELLYATGIRVSELISLKLTDVNFDTGYITCV-DSHKGR 176

Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           ++P+ P  + A++ Y  D  P  +     + LF    G  ++   F + I+   +  G+ 
Sbjct: 177 MIPMTPVAKDALVRYIRDGRPQLVKDENSIWLFTNCSGDAMSRQGFWKLIKSYGKRAGIE 236

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              T H LRHSFA HL+ +G DL+S+Q ILGH  +STTQ+Y ++N
Sbjct: 237 SEITPHMLRHSFAAHLVCSGADLKSVQEILGHSDISTTQMYAHMN 281


>gi|46907504|ref|YP_013893.1| integrase/recombinase XerC [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|226223880|ref|YP_002757987.1| integrase/recombinase [Listeria monocytogenes Clip81459]
 gi|254852669|ref|ZP_05242017.1| integrase/recombinase XerC [Listeria monocytogenes FSL R2-503]
 gi|254932406|ref|ZP_05265765.1| integrase/recombinase XerC [Listeria monocytogenes HPB2262]
 gi|255520259|ref|ZP_05387496.1| integrase/recombinase [Listeria monocytogenes FSL J1-175]
 gi|300765313|ref|ZP_07075297.1| integrase/recombinase XerC [Listeria monocytogenes FSL N1-017]
 gi|71153411|sp|Q720E4|XERC_LISMF RecName: Full=Tyrosine recombinase xerC
 gi|259710432|sp|C1L2I5|XERC_LISMC RecName: Full=Tyrosine recombinase xerC
 gi|46880772|gb|AAT04070.1| integrase/recombinase XerC [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|225876342|emb|CAS05051.1| Putative integrase/recombinase [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
 gi|258605987|gb|EEW18595.1| integrase/recombinase XerC [Listeria monocytogenes FSL R2-503]
 gi|293583963|gb|EFF95995.1| integrase/recombinase XerC [Listeria monocytogenes HPB2262]
 gi|300513996|gb|EFK41059.1| integrase/recombinase XerC [Listeria monocytogenes FSL N1-017]
 gi|328468566|gb|EGF39566.1| tyrosine recombinase xerC [Listeria monocytogenes 1816]
 gi|328475121|gb|EGF45905.1| tyrosine recombinase xerC [Listeria monocytogenes 220]
 gi|332311722|gb|EGJ24817.1| Tyrosine recombinase xerC [Listeria monocytogenes str. Scott A]
          Length = 300

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 147/309 (47%), Gaps = 21/309 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q +   L  ER  S  T  +YE D    L F  F  E+ IT  T +Q+++ ++R ++
Sbjct: 6   KLEQQFFDYLHSERNYSVNTSTAYEND---LLDFRRFLNEQAIT--TYQQVTFLDVRIYL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++ + +     ++ R +S ++SF  +L +  +  E+    + + K    LP+    ++  
Sbjct: 61  TELKQKSFSRTTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEME 120

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L   V      + + +  R+  +L +LYG G+R+SE   +   ++      + I+GKG+
Sbjct: 121 ALFQVVY----EDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGN 176

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVFQRYIRQL 250
           K R VP       AI +Y    P   NL  +       L     G PL     +  + ++
Sbjct: 177 KERYVPFGVYAEDAITDY---LPERANLMSRYKKSHDALLVNHYGDPLTTRGIRYCLSKI 233

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                L      H LRH+FAT LL+NG D+R++Q +LGH  LS+TQIYT+V  ++    +
Sbjct: 234 ISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----L 289

Query: 311 MEIYDQTHP 319
              Y + HP
Sbjct: 290 KSTYMKHHP 298


>gi|192362212|ref|YP_001983742.1| tyrosine recombinase XerC [Cellvibrio japonicus Ueda107]
 gi|190688377|gb|ACE86055.1| tyrosine recombinase XerC [Cellvibrio japonicus Ueda107]
          Length = 313

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 142/297 (47%), Gaps = 16/297 (5%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           E+  S  T  +Y  D  +F  +          IQ + ++    +R  ++    Q +  +S
Sbjct: 22  EKQFSPHTQSNYARDLEKFQRYC-----RDAGIQQLTEVDARAVRMAVASLHRQGLAGKS 76

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           L+R LS ++ F +Y  +    + +    +   K    LP+ L+  Q    V         
Sbjct: 77  LQRWLSSLRGFFQYAIRHHWMSINPADGIAAPKTPKKLPKTLDVDQTAQFV------AVE 130

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
              +I  R+ A+L L+Y  GLR++E  SL   +I    + + + GKG K R +P+  SV 
Sbjct: 131 GDDFIHKRDRALLELIYSSGLRLAEVTSLNLGDIDWGDAMVTVTGKGSKTRTLPV-GSVA 189

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
            A L+ +           +  LF   RGK ++    Q  ++QL    G+      H LRH
Sbjct: 190 IAALKDWLSQREQYAPASEPALFITQRGKRISHRAVQLRLQQLSVQQGMDNPVHPHMLRH 249

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           SFA+H+L + GDLR +Q +LGH  +STTQIYT+++ ++    + ++YD+ HP   +K
Sbjct: 250 SFASHMLESSGDLRLVQELLGHANISTTQIYTHLDFQH----LAKVYDKAHPRAGRK 302


>gi|158320625|ref|YP_001513132.1| tyrosine recombinase XerD [Alkaliphilus oremlandii OhILAs]
 gi|158140824|gb|ABW19136.1| tyrosine recombinase XerD [Alkaliphilus oremlandii OhILAs]
          Length = 294

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 149/297 (50%), Gaps = 18/297 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L+ E+ LSK TL+ Y+ D  Q+LI++     + +  Q +   + T +  ++   +     
Sbjct: 12  LDQEKKLSKNTLECYKRDIVQYLIYI-----DHVVNQDLFLTNKTTVITYLLHLQKSGKS 66

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             ++ R+L+ I+ F K+L   K       +N+   K     P  L  ++      ++LL 
Sbjct: 67  TATISRNLASIRCFYKFLLLNKRMDYDPTINLEAPKIERKTPMTLTLEEV-----DLLLS 121

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
              E     AR+ A+L LLY  G+R++E +SL  +++  +   +R    G K R +P   
Sbjct: 122 QPLEITDKGARDKAMLELLYATGIRVTELISLNLEDVNLNLGFIRCHN-GSKERFIPTGS 180

Query: 205 SVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
              +++ +Y +     F L    +  LF    GKPL+   F + I+       +  S T 
Sbjct: 181 IALESLTKYIENHRASF-LKDPSERSLFLNYYGKPLSRQGFWKIIKAYTEQSNIEKSITP 239

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           +TLRHSFATHL+ NG DL+S+Q +LGH  +STTQIY  V      + + E+Y++THP
Sbjct: 240 NTLRHSFATHLIQNGADLKSVQEMLGHADISTTQIYAYV----MKNRIKEVYNKTHP 292


>gi|325917722|ref|ZP_08179910.1| tyrosine recombinase XerD subunit [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536051|gb|EGD07859.1| tyrosine recombinase XerD subunit [Xanthomonas vesicatoria ATCC
           35937]
          Length = 337

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 155/313 (49%), Gaps = 31/313 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L  E+G+++ TL SY  D    L  LA + +       +  +  + +  ++  R
Sbjct: 42  ERFLDRLWAEQGVARQTLDSYRRD----LEGLARWRDG--AGGGLLGIDRSVLFDYLRWR 95

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
              +   RS  R LS +++F     +  + ++     +   +   SLP+AL E Q    +
Sbjct: 96  TEARYSPRSNARLLSTLRAFYGLCLRDGVRSDDPTALLDPPRLPRSLPKALTETQ----I 151

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D +L     +T  +  R+ A+L L+Y  GLR+SE ++L    +   Q  LR+ GKG K R
Sbjct: 152 DALLAAPDIQTP-LGLRDRAMLELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKER 210

Query: 199 IVPL-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           +VPL           L   R  + ++  +   D     Q+PLF     +P +   F   +
Sbjct: 211 LVPLGEESQHWLERYLHEARPLLADHKAVAAVD----GQVPLFIDAARQPPSRQHFWALV 266

Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           ++     G+ P + + H LRHSFATHLL++G DLR++Q +LGH  LSTTQIYT V  ++ 
Sbjct: 267 KRYAAVAGIDPATVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQH- 325

Query: 307 GDWMMEIYDQTHP 319
              + +++ + HP
Sbjct: 326 ---LQKLHAKHHP 335


>gi|222087381|ref|YP_002545918.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium
           radiobacter K84]
 gi|221724829|gb|ACM27985.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium
           radiobacter K84]
          Length = 319

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 98/321 (30%), Positives = 157/321 (48%), Gaps = 23/321 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ +  ERG +  TLQSYE D      FL   +E  + +    +    ++ A++S  
Sbjct: 11  EAFLEMMSAERGAAVNTLQSYERDLDDLHSFL---SERSVRLT---EAGSNDLGAYLSGL 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R LS ++ F K+L    + T+     +   KK  +LP+ +  ++   L+
Sbjct: 65  SRQGFKPSSQARRLSAMRQFYKFLYAEGLRTDDPTGILDAPKKGRALPKTMGVEEVTRLL 124

Query: 139 DNVLLHTSHET--KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-LRIQGKGD 195
                  + E+  +    R   +L LLY  G+R+SE ++L P  ++D +   L I+GKG+
Sbjct: 125 TQAEKEAAEESPDQLQRLRMLVLLELLYATGMRVSELVTL-PAKVLDQEGRFLMIRGKGN 183

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP------LFRGIRGKPLNP-GVFQRYIR 248
           K R+VPL  S   A L+ Y      +  N + P      LF     +   P  VF R ++
Sbjct: 184 KERLVPLSQSA-IAALKTYGKLQTQVAANTKQPAPESAWLFPAASKQGYLPRQVFARDLK 242

Query: 249 QLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            L    GL P   + H +RH+FA+HLL+NG DLR +Q +LGH  +STTQIYT+V  +   
Sbjct: 243 DLAIRAGLTPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER-- 300

Query: 308 DWMMEIYDQTHPSITQKDKKN 328
             + ++    HP   Q  K+ 
Sbjct: 301 --LHQLVQMHHPLAKQGKKQE 319


>gi|91785030|ref|YP_560236.1| site-specific tyrosine recombinase XerD [Burkholderia xenovorans
           LB400]
 gi|91688984|gb|ABE32184.1| Putative phage integrase/recombinase family protein [Burkholderia
           xenovorans LB400]
          Length = 311

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 140/296 (47%), Gaps = 17/296 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E GLS+ TL +Y  D R F  +LA       ++ T    S  ++ A+ + R  QK  
Sbjct: 30  LWLEHGLSRNTLDAYRRDLRLFCEWLA--QSRNASLDTA---SEADLNAYSAAR--QKDK 82

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R LS  + +  +  +         + +R+ K+    P  L E Q   L+    + 
Sbjct: 83  STSANRRLSVFRRYYGWAVREHRAKVDPTVRIRSAKQPPRFPSTLTEAQVEALLGAPDVD 142

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           T      +  R+  +L L+Y  GLR++E ++L    +  ++  +R+ GKG K R++P   
Sbjct: 143 TP-----LGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKERLIPFGE 197

Query: 205 SVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
                I  Y  +  P  L       LF   R + +    F   I++     G+    + H
Sbjct: 198 EAHGWIERYLREARPALLGARATDALFVTGRAEGMTRQQFWNIIKRHAAAAGVNAPLSPH 257

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           TLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++ Q HP
Sbjct: 258 TLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARER----LKSLHAQHHP 309


>gi|21957074|gb|AAM83976.1|AE013639_5 site-specific recombinase [Yersinia pestis KIM 10]
          Length = 308

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 151/309 (48%), Gaps = 17/309 (5%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           S  L  + + +L+ L IER LS LT+ SY    RQ    +     E++ +   + L   +
Sbjct: 10  SASLAPQVEAFLRYLSIERQLSPLTVTSYR---RQLSALMEI--GEQMGLAHWQTLDAAQ 64

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +R+ +S+ +   +   SL   LS ++SFL +L  + +   +    +   +    LP+ ++
Sbjct: 65  VRSLVSRSKRAGLHASSLALRLSALRSFLNWLVSQGVLPANPAKGVSTPRSGRHLPKNID 124

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             +   L+   L         +  R+ A+L ++YG GLR+SE + +  +++      + +
Sbjct: 125 VDEVNKLLSIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGMNCKHVDLASGDVWV 178

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG K R VPL  +    +  +  L   +L       +F    GK ++    Q+   + 
Sbjct: 179 MGKGSKERKVPLGKTAVTWLQHW--LALRELFEPQDDAIFLANTGKRISARNVQKRFAEW 236

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+      H LRHSFATH+L + GDLR++Q +LGH  L+TTQIYT+++ ++    +
Sbjct: 237 GVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----L 292

Query: 311 MEIYDQTHP 319
             +YD  HP
Sbjct: 293 ATVYDAAHP 301


>gi|306818595|ref|ZP_07452318.1| tyrosine recombinase XerD [Mobiluncus mulieris ATCC 35239]
 gi|304648768|gb|EFM46070.1| tyrosine recombinase XerD [Mobiluncus mulieris ATCC 35239]
          Length = 319

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 149/310 (48%), Gaps = 22/310 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK- 77
           Q++L  L +ERG S  T+ +Y+ D ++++ +L     +     T+ Q++  ++  F+   
Sbjct: 18  QDFLNYLSVERGASPHTIAAYQRDLQRYVAYLQILGRD-----TLAQVTEIDLEGFVRAL 72

Query: 78  ----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
                    +G  S++R L+  +S+ +YL      + S   N+ +  K   LPR L E  
Sbjct: 73  GDGFASFPPLGSTSVRRCLAAARSWHRYL----FDSGSLGANVASSVKPAKLPRRLPETL 128

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQ 191
            L  ++ +L   S        R+ A+L  LY  G RISEA++L   +I    + + +R+ 
Sbjct: 129 NLEEMEALLAAASSPGDSNSLRDRALLEFLYASGARISEAMNLVLDDIDFETEPALVRLF 188

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQ 249
           GKG K RI  L     +A+  Y       L    Q    +F    GKP++       I+ 
Sbjct: 189 GKGRKERISMLGRQACQALQAYLVRVRPTLAEKGQSRGRVFLNTYGKPMSRQTAWAIIQA 248

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +   +      HTLRH FATHLL  G D+R +Q +LGH  ++TT+IYT V+ +     
Sbjct: 249 AAKRAQIDRPVHPHTLRHCFATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQ----M 304

Query: 310 MMEIYDQTHP 319
           ++E+Y   HP
Sbjct: 305 LLEVYASAHP 314


>gi|296164601|ref|ZP_06847168.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295900020|gb|EFG79459.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 313

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 146/310 (47%), Gaps = 19/310 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF-ISK 77
           Q +L +L IERG++  TL SY  D R++   L+        I  + ++   ++  F ++ 
Sbjct: 11  QGYLDHLTIERGVAANTLSSYRRDLRRYTKHLS-----DRGIHDLAKVGEDDVSEFLVAL 65

Query: 78  RR------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           RR      T  +   S  R+L  ++   ++     +        +R       LP++L  
Sbjct: 66  RRGDPDAGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPGRRLPKSLTI 125

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            Q L L++     ++ +   +  RN A+L LLY  G RISEA+ L   ++     ++ ++
Sbjct: 126 DQVLALLEGAGGDSASDGP-LTLRNRALLELLYSTGARISEAVGLDVDDVDSRARSVLLR 184

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQ 249
           GKG K R+VP+     +A+  Y      DL    +    +F  +RG  L+     + ++ 
Sbjct: 185 GKGGKQRLVPVGRPAVQALDAYLVRGRPDLARRGRGTPAIFLNVRGGRLSRQSAWQVLQD 244

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+    + H LRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V        
Sbjct: 245 AAERAGISSGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTMVTVHA---- 300

Query: 310 MMEIYDQTHP 319
           + E++   HP
Sbjct: 301 LREVWAGAHP 310


>gi|170724856|ref|YP_001758882.1| tyrosine recombinase XerC [Shewanella woodyi ATCC 51908]
 gi|169810203|gb|ACA84787.1| tyrosine recombinase XerC [Shewanella woodyi ATCC 51908]
          Length = 299

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 156/324 (48%), Gaps = 47/324 (14%)

Query: 20  NWLQNLE----IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           NW Q+ E     ER LSK T+++Y  +  +    L   T       +   +S  +I++ +
Sbjct: 4   NWFQHFESYLSAERQLSKHTVRNYLFELNRVDQLLDDST-------SWLSVSREQIQSAM 56

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           S+   + +  RSL  +LS +K F ++L +  +   +  +N+   K++  LP+ ++     
Sbjct: 57  SQLHRRGLSPRSLSLTLSAVKQFCEFLLREGVIQTNPAINLSAPKQNKPLPKNMDPDSVS 116

Query: 136 TLVDNVLLHTSHETKWIDA------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            L++            ID       R+ AI+ L Y  GLR++E  +L   +I   +  ++
Sbjct: 117 HLLE------------IDGDDPLSLRDKAIMELFYSSGLRLAELAALNISDIQFSERLVK 164

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           + GKG K RI+P+      AI ++        C  D        LF   +G  L     Q
Sbjct: 165 VLGKGGKERILPIGKMAISAIDKWLACRRLIPCEHD-------ALFITNKGTRLAHRSIQ 217

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             + +  +   L +    H LRHSFATH+L +  DLR++Q +LGH  LSTTQIYT+++ +
Sbjct: 218 ARLSKWGQEQALNMRVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQIYTSLDFQ 277

Query: 305 NGGDWMMEIYDQTHP--SITQKDK 326
           +    + ++YD  HP  +  +KDK
Sbjct: 278 H----LAKVYDGAHPRAAKAKKDK 297


>gi|148552940|ref|YP_001260522.1| phage integrase family protein [Sphingomonas wittichii RW1]
 gi|148498130|gb|ABQ66384.1| phage integrase family protein [Sphingomonas wittichii RW1]
          Length = 301

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 147/306 (48%), Gaps = 31/306 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQF--LIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +L+ L  E G ++ TL +Y  D R    L+       +   +QT+          +++ 
Sbjct: 9   QFLEMLAAEGGAARNTLLAYGSDLRGASELLGGGLVGADTAGLQTLGG-------EWMAL 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            RT      S+ R  S ++ F  +L++  I  +     +       +LPR L+      L
Sbjct: 62  SRT------SVARKASVLRRFFAFLEEEGIRRDDPSDALPRPAVQRALPRTLSHGDIERL 115

Query: 138 VDNVLLHTSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
            D   L      +  D    R  A++ LLYG GLR +E +SL    +  D+  L ++GKG
Sbjct: 116 FDT--LEERRRDRHADPLTLRLIALVELLYGSGLRATELVSLPRHALRGDRPFLILRGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            + R+VP+    R A+ E+    P D     Q  LF    G      +FQ  +R+L    
Sbjct: 174 GRERLVPISDRARMAVAEWGAHVPTD-----QPWLFPSGHGHLSRVRLFQ-LVRELAAEA 227

Query: 255 GLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           G+P    + H LRH+FATHLL  G DLR++Q++LGH  ++TTQIYT+VNS +    ++E+
Sbjct: 228 GIPPQRISPHVLRHAFATHLLEGGADLRALQTMLGHADIATTQIYTHVNSAH----LVEL 283

Query: 314 YDQTHP 319
            +  HP
Sbjct: 284 VNARHP 289


>gi|229515837|ref|ZP_04405295.1| tyrosine recombinase XerC [Vibrio cholerae TMA 21]
 gi|229347100|gb|EEO12061.1| tyrosine recombinase XerC [Vibrio cholerae TMA 21]
          Length = 311

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 155/304 (50%), Gaps = 16/304 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  E+GLS+ T ++Y+        +L      ++ +    QL    +R  + + + Q + 
Sbjct: 24  LHTEKGLSQYTQRNYKQQLETMTQYLV-----QVGLTHWSQLDSAWVRQLVMQGKRQGMK 78

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S+   LS ++SFL +L  R     +    +   +K  +LP+ L+  +   L++     
Sbjct: 79  ASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVDEMAQLLEVT--- 135

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
              +   +  R+ AI+ L+YG GLR++E +S+  +++   +  +R+ GKG+K R V    
Sbjct: 136 ---DDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVWFAG 192

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             ++ + ++  L    L  + +  LF    G  ++    Q+ + +  +   +    + H 
Sbjct: 193 QAQEWVGKWLKLRS-QLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPHK 251

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ ++    + ++YDQ HP   +K
Sbjct: 252 LRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQH----LAQVYDQAHPRARKK 307

Query: 325 DKKN 328
           +K +
Sbjct: 308 NKDD 311


>gi|206901908|ref|YP_002251233.1| recombinase [Dictyoglomus thermophilum H-6-12]
 gi|206741011|gb|ACI20069.1| recombinase [Dictyoglomus thermophilum H-6-12]
          Length = 301

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 153/315 (48%), Gaps = 19/315 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L +E +N++  L  ER  S  TL+SY   +R  + F  +  E+ +     R      +R
Sbjct: 4   DLKREIENYINYLRFERNYSPNTLRSY---SRDLMDFYKYCKEKDLDFTNKRN-----VR 55

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           ++I     +   + +  R +  ++SF +YL   +   E   + +   K    LP+ L+  
Sbjct: 56  SYIQFIAQKNYKNSTFVRKVISLRSFFEYLLTFEKINEDLTVFIPTPKAEKKLPQFLSVD 115

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + + L+++  L        I  R+ AI+  LY  G+R+SE + +  ++I  +   +R+ G
Sbjct: 116 EVMKLLNSPSL-----DDLIGIRDRAIIETLYATGIRVSELVGMNEEDINWNYGEIRVFG 170

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K  K RIV +     K +  Y D     L    +   F   +G  ++    +  I++  +
Sbjct: 171 KRAKERIVIVGEETLKILQLYKDHVRPKLLKKPEKAFFLNAKGGRISDRAIRMIIKKYTK 230

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                +S   HTLRH+FATHLL  G DLR +Q +LGH R+STTQIYT++ S    + + +
Sbjct: 231 DFNKKVS--PHTLRHTFATHLLEGGADLRYVQELLGHVRISTTQIYTHLTS----EQIRK 284

Query: 313 IYDQTHPSITQKDKK 327
            Y  +HP   +K+ K
Sbjct: 285 TYTLSHPRAIKKETK 299


>gi|93004888|ref|YP_579325.1| tyrosine recombinase XerD [Psychrobacter cryohalolentis K5]
 gi|92392566|gb|ABE73841.1| Tyrosine recombinase XerD [Psychrobacter cryohalolentis K5]
          Length = 312

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 128/238 (53%), Gaps = 13/238 (5%)

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           R+  R LS ++ F  ++    +  ++    +++ K    LP+ L E      VDN+L   
Sbjct: 82  RTQARMLSSLRQFYLWMIASNLREDNPCERIKSPKLGRPLPKDLAEAD----VDNLLAAP 137

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
              T  +  R+ A+L +LY CGLR+SE ++L+ + +  +   L+I GKG+K R+VPL   
Sbjct: 138 DSSTA-LGLRDKAMLEVLYACGLRVSELVNLSLEQVNLNSGWLQITGKGNKTRLVPLGEY 196

Query: 206 VRKAILEYYDLCPFDLNLNIQL----PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
              A+ +Y      DL  +++      +F   +G  +    F   +++  +   +    +
Sbjct: 197 AADALEDYLTHGRGDLIAHLKAGNCQAVFLTAQGGYMTRQNFWYLLKKYAKVASIDKDLS 256

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            HTLRH+FATHLL++G DLRS+Q +LGH  LSTTQIYT+V +      + +++ + HP
Sbjct: 257 PHTLRHAFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHVATAR----LQKLHAEHHP 310


>gi|239917914|ref|YP_002957472.1| tyrosine recombinase XerD [Micrococcus luteus NCTC 2665]
 gi|239839121|gb|ACS30918.1| tyrosine recombinase XerD [Micrococcus luteus NCTC 2665]
          Length = 321

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 97/332 (29%), Positives = 141/332 (42%), Gaps = 66/332 (19%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L +L +ERGL++ TL +Y  D  ++  +L     E   ++    +    +  F+    T 
Sbjct: 19  LDHLAVERGLAENTLAAYRRDLARYRRWL-----EAAGVRAPGDVDPGHVAGFVQALATG 73

Query: 82  KIGDRSLK-----RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             G R L      R L+ ++   ++     +       ++   K    LPRAL  +Q   
Sbjct: 74  DDGGRPLAVRSAARVLAAVRGLHRFWALEGLAETDPARDVHPPKPGTRLPRALPVEQVSA 133

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP------QNIMDD--QSTL 188
           L+D V   T         R+ A+L  LYG G RISE + L            DD  Q  +
Sbjct: 134 LLDAVPTDTP-----AGLRDRALLEFLYGTGARISEVVGLDVDDVVGLAQTGDDGGQPVV 188

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL--------NP 240
           R+ GKG K R+VP+           Y     D  L         +RG+P          P
Sbjct: 189 RLFGKGSKERVVPI---------GSYAAAALDAWL---------VRGRPTIMAGAARSTP 230

Query: 241 GVF-----QRYIRQ-----LRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
            +F      R  RQ     L+R     GL    + HTLRH FATHLL+ G D+R +Q +L
Sbjct: 231 ALFVNACGGRLSRQSAWAVLKRAAERAGLEADVSPHTLRHCFATHLLAGGADVRVVQELL 290

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           GH  ++TTQ+YT V      D + E+Y   HP
Sbjct: 291 GHASVTTTQVYTLVTV----DSLREVYSAAHP 318


>gi|332886450|gb|EGK06694.1| hypothetical protein HMPREF9456_00568 [Dysgonomonas mossii DSM
           22836]
          Length = 295

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 148/301 (49%), Gaps = 13/301 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +++ L  E+  S  T  SY  D  QF+ FLA    E  +   I+ +    IR +I   
Sbjct: 6   EKYIRYLRYEKNYSLHTEISYSEDLSQFVEFLA----EHFSDTDIKHVDRDIIRMWIVSM 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             ++I  RS+ R LS +KSF +YL++    T +    +   K    +P   N      ++
Sbjct: 62  MEREISARSVNRKLSAVKSFYRYLQRIGEVTVNPASKVNGPKVGRPIPAFANSADMAKVL 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D      S E+     R+  I+ L Y  G+R +E + L   ++     T+++ GK +K R
Sbjct: 122 DEENYGDSFES----LRDHIIIELFYVTGIRRAELIGLKDVDVDFSSETIQVTGKRNKQR 177

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++P    +++++ +Y  +   ++  N    LF    G+PL P +  R +    + +    
Sbjct: 178 LIPFSNGMKQSLEQYIAVRNKEVG-NQSGYLFVKNNGEPLYPMLVHRIVTSSLQQIETLS 236

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRHSFAT +L+NG D+ +++ +LGH  L+ T+IYT+ + +     +  IY++ H
Sbjct: 237 KVSPHVLRHSFATGMLNNGADINAVKELLGHASLAATEIYTHTSFEE----LKRIYNKAH 292

Query: 319 P 319
           P
Sbjct: 293 P 293


>gi|323697881|ref|ZP_08109793.1| tyrosine recombinase XerD [Desulfovibrio sp. ND132]
 gi|323457813|gb|EGB13678.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans ND132]
          Length = 307

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 144/302 (47%), Gaps = 16/302 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L++L IE+GLS+ +L  Y  D    L FL    EE+     ++ L+   +  +++  R 
Sbjct: 21  YLEHLLIEKGLSENSLTGYANDLGSLLAFL----EERSF--PLKDLTDQTLFLYLTHLRA 74

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  RSL R LS ++ F  +    K   E     + N K    LPR L E  +   +  
Sbjct: 75  RGLKSRSLARHLSSLRGFFAFAVGEKWYKEDPGQLLENPK----LPRKLPEFLSREEISR 130

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           VL      T  +  R+  +L LLY  GLR+SE + +   +       L++ GKG K R++
Sbjct: 131 VLALPDTSTP-LGMRDKVMLELLYAAGLRVSELIGMKVLDYDPQVGMLKVFGKGSKDRLI 189

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+  + +  +  Y +             +F    GK L      + I++     G+  S 
Sbjct: 190 PIHYTAQDYLNRYLEFTRPGFKPREDF-MFLNRSGKGLTRQGVWKLIKKYAEAAGIKRSI 248

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + HT RHSFATHLL  G DLR++Q +LGH  +S T+IYT+V +      +  ++ + HP 
Sbjct: 249 SPHTFRHSFATHLLEGGADLRTVQILLGHADISATEIYTHVEANR----LKTLHRKFHPR 304

Query: 321 IT 322
            T
Sbjct: 305 ST 306


>gi|319781237|ref|YP_004140713.1| tyrosine recombinase XerD [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317167125|gb|ADV10663.1| tyrosine recombinase XerD [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 305

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 133/297 (44%), Gaps = 30/297 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ +  ERG ++ TL SY  D                    +   +  +IRA++   
Sbjct: 8   EAFLEMMSAERGAAENTLSSYRRD---------LEDASGAIDGGLAGAAAADIRAYLDDI 58

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S  R LS I+ F K+L    +  +     + + KK   LP+ ++E     L+
Sbjct: 59  AARGFAATSQARKLSAIRQFFKFLYAEGLRGDDPTGTLDSPKKGRPLPKTMSEADTGRLI 118

Query: 139 DNVLLHTSHETKW-----IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           D   +     +          R  A++ +LY  GLR+SE + L       D     ++GK
Sbjct: 119 DRAAIEAGDVSSGDGDSLASLRLHALVEVLYATGLRVSELVGLPVTVAQRDDRFFMVRGK 178

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR--------GIRGKPLNPGVFQR 245
           GDK R+VPL    R A+  +       L    ++P F               L+  VF R
Sbjct: 179 GDKERMVPLSAKARAAMKTW-------LAARAKVPAFADSPFLFPAASDSGYLSRQVFAR 231

Query: 246 YIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            ++ L    G+  +  + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V
Sbjct: 232 DLKGLAARAGIASAKISPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHV 288


>gi|145588480|ref|YP_001155077.1| tyrosine recombinase XerD [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145046886|gb|ABP33513.1| tyrosine recombinase XerD subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 305

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 147/306 (48%), Gaps = 39/306 (12%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLA--FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +E GL+K +L +Y  D    L+ LA   Y +  + +  + +    ++ A+I+ RR  K  
Sbjct: 24  LEDGLAKNSLSAYRRD----LLLLAQWLYQQSGVDLYAVTE---KDLTAYIAHRRADKA- 75

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +  R L+  K F ++  +  +      + +R  K++   P+ L+E Q   L++   + 
Sbjct: 76  -TTANRRLTVFKRFYRHALRINLVKSDPCIGLRAAKQALRFPKTLSEDQVTALLNAPDIE 134

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLL 203
           T      +  R+  +L L+Y  GLR+SE +SL    +  ++  +R+  GKG K R+VP  
Sbjct: 135 TP-----LGLRDRTMLELMYASGLRVSEIVSLKTVALGLNEGVVRVVNGKGGKERLVPFG 189

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIR----------GKPLNPGVFQRYIRQLRRY 253
               + +  Y            + PL  G            G  L    F   I++    
Sbjct: 190 GEAGQWLRRYLA--------EARTPLLEGKTTDAVFVGRHTGTGLTRQAFWALIKRYATV 241

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +P++ + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  I
Sbjct: 242 ANIPVALSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER----LKSI 297

Query: 314 YDQTHP 319
           + Q HP
Sbjct: 298 HQQHHP 303


>gi|294664569|ref|ZP_06729911.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292605653|gb|EFF48962.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 323

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 150/309 (48%), Gaps = 23/309 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L     E+G+++ TL+SY  D    L  LA + +       +  +    +  ++  R
Sbjct: 28  ERFLDRFWAEQGVARQTLESYRRD----LEGLARWRDG--AGGGLLGIDRAALFDYLRWR 81

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  RS  R LS +++F     +  + ++     +   +   SLP+AL E Q   L+
Sbjct: 82  TRANYSPRSTARLLSTLRAFYGLCLRDGVRSDDPTALIDPPQLPRSLPKALTESQIEALL 141

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
               L T         R+ A+L L+Y  GLR+SE ++L    +   Q  LR+ GKG K R
Sbjct: 142 AAPDLDTP-----AGLRDRAMLELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDR 196

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNI-------QLPLFRGIRGKPLNPGVFQRYIRQLR 251
           +VPL    +  +  Y       L  N        Q+PLF  +  +PL+   F   +++  
Sbjct: 197 LVPLGEESQHWLERYLREARPLLAANKPVTAVDGQVPLFIDVSRQPLSRQQFWALVKRYA 256

Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              G+ P++ + H LRHSFATHLL++G DLR++Q +LGH  LSTTQIYT V  ++    +
Sbjct: 257 AAAGIDPVTVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQH----L 312

Query: 311 MEIYDQTHP 319
            +++   HP
Sbjct: 313 QKLHASHHP 321


>gi|213965974|ref|ZP_03394164.1| tyrosine recombinase XerD [Corynebacterium amycolatum SK46]
 gi|213951388|gb|EEB62780.1| tyrosine recombinase XerD [Corynebacterium amycolatum SK46]
          Length = 312

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 145/300 (48%), Gaps = 13/300 (4%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-- 82
           L +E+GLS  TL SY+ D  ++  +L      ++   T + +S  E  A++++    +  
Sbjct: 15  LAVEKGLSANTLASYKRDLEKYRTYLREIGRTELAQVTEQDVS--EFLAYLARGDKSEGR 72

Query: 83  --IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +   S+ RSLS ++SF K+              +   K+ +  P+AL+  +   L+++
Sbjct: 73  PALAPTSVTRSLSAVRSFHKFAVGEGALDVDVAKRVAPPKQPSRYPKALSIDEVTRLIES 132

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +           D RN A++  LY  G R+SE   L   ++  + + + ++GKG K RIV
Sbjct: 133 I--PDDGTAVVTDLRNRALVEFLYSTGARVSEVTGLDIDDVDRETNLVLLRGKGGKERIV 190

Query: 201 PLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+      A+  +     P  +  N    LF    G+ L+       + +L    GL + 
Sbjct: 191 PVGSPAMAALDAWLTRGRPSWVRANSGPALFINSLGRRLSRQSAGNTLAELGERAGLKVK 250

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRHSF THL+  G D+R +Q +LGH  ++TTQIYT + ++N    M  ++   HP
Sbjct: 251 ISPHTLRHSFGTHLIEGGADVRVVQELLGHASVTTTQIYTMITAEN----MRRVWAGAHP 306


>gi|118498082|ref|YP_899132.1| site-specific recombinase [Francisella tularensis subsp. novicida
           U112]
 gi|194323307|ref|ZP_03057091.1| phage integrase family protein [Francisella tularensis subsp.
           novicida FTE]
 gi|254373434|ref|ZP_04988922.1| integrase/recombinase XerC [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|254374894|ref|ZP_04990375.1| hypothetical protein FTDG_01073 [Francisella novicida GA99-3548]
 gi|118423988|gb|ABK90378.1| site-specific recombinase [Francisella novicida U112]
 gi|151571160|gb|EDN36814.1| integrase/recombinase XerC [Francisella novicida GA99-3549]
 gi|151572613|gb|EDN38267.1| hypothetical protein FTDG_01073 [Francisella novicida GA99-3548]
 gi|194322671|gb|EDX20151.1| phage integrase family protein [Francisella tularensis subsp.
           novicida FTE]
          Length = 292

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 161/322 (50%), Gaps = 45/322 (13%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+   N+L NL   +  S+ T+ +Y+ D  Q          + ++ + I  L++++I  +
Sbjct: 4   LEHINNFLDNLLYLKNYSQETINNYQRDLLQL--------NQALSDKNIISLTHSDILIW 55

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I K   Q    ++L+R LS ++SF  +L   +I +++    ++  K S  LP+ +N  + 
Sbjct: 56  IKKLHAQGNSPKTLQRKLSSVRSFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDEL 115

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D   ++ S++   I+AR+ A   LLY CG+R+SE  S+  ++I   Q  +R+ GKG
Sbjct: 116 AYLLD---VNPSND---IEARDIACFDLLYSCGIRLSELSSVELKDISISQKNIRVTGKG 169

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----------LFRGIRGKPLNPGVF 243
           +K RIV            Y+       NLN  L            LF    GK L     
Sbjct: 170 NKQRIV------------YFGTKTLS-NLNRWLKIRDSLKPSSDYLFISRDGKHLTNRSI 216

Query: 244 QRYIRQL-RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           Q+ +    ++Y    +    H LRHSFA+H+L +  DL +++ +LGH  +S+TQIYT++N
Sbjct: 217 QKRLEIFAQKYASRHIH--PHMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLN 274

Query: 303 SKNGGDWMMEIYDQTHPSITQK 324
            +     +  ++D+ HP   +K
Sbjct: 275 FQQ----LASVFDKAHPRAKKK 292


>gi|326572192|gb|EGE22188.1| tyrosine recombinase XerD [Moraxella catarrhalis BC7]
          Length = 307

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 149/294 (50%), Gaps = 19/294 (6%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           + RGLS  T  +Y  D R  +         +++   +     +++R  +   +  K  +R
Sbjct: 30  LARGLSIATRNAYSQDVRLCI---------RLSDMPVNLWQPSDVRNHLMCLKDAKKSER 80

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S+ R L+ +  F  +  +     ++   +++  K   +LP+ L+E++  +L+D   + + 
Sbjct: 81  SIARVLASLCQFFLWQIESGYREDNPCESIKTPKLGKTLPKTLSEQEVSSLLDAPDISSV 140

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                   R+ A+L +LY CGLR+SE  SL+ +++      L + GKG+K+R++PL    
Sbjct: 141 R-----GLRDKAMLEVLYACGLRVSELTSLSLEHLNLTAGWLSVTGKGNKMRLIPLGEYA 195

Query: 207 RKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
             A+ EY  +     +       +F   +G  +    F   I++     G+  + + HTL
Sbjct: 196 LSALNEYLAVRGSLLIGKKDCQAVFLTEQGGYMTRHNFWHLIKKYALMAGINTAISPHTL 255

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           RH+FATHL+++G DLRS+Q +LGH  LSTTQIYT+V +      +  ++ + HP
Sbjct: 256 RHAFATHLVNHGADLRSVQLLLGHSDLSTTQIYTHVATTR----LQNLHAKHHP 305


>gi|309804168|ref|ZP_07698246.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 11V1-d]
 gi|309805694|ref|ZP_07699734.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 09V1-c]
 gi|308163751|gb|EFO66020.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 11V1-d]
 gi|308164947|gb|EFO67190.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 09V1-c]
          Length = 179

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/171 (36%), Positives = 101/171 (59%), Gaps = 9/171 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AIL  LY  G+R+SE ++L   +I ++   +++ GKG K R++P+  +V  + ++ Y
Sbjct: 14  RDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPI-SNVAMSWIKKY 72

Query: 215 DLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            +   +  L      +  +F   RG  +      + I++  +  G+  + T HTLRH+FA
Sbjct: 73  QITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLAGINKNVTPHTLRHTFA 132

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           THLL NG DLR +Q ILGH  +STTQIYTN+  K+    +M++Y +THP I
Sbjct: 133 THLLENGADLRIVQEILGHSDISTTQIYTNLTQKH----IMDVYKRTHPRI 179


>gi|150025257|ref|YP_001296083.1| tyrosine recombinase XerC [Flavobacterium psychrophilum JIP02/86]
 gi|149771798|emb|CAL43272.1| Tyrosine recombinase XerC [Flavobacterium psychrophilum JIP02/86]
          Length = 298

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 141/299 (47%), Gaps = 26/299 (8%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           E+  S LT  +Y  D + F  FL    E K     + ++SYT IR++I      ++ + S
Sbjct: 15  EKNYSPLTALAYGKDLQFFQTFL----EIKFDNTPLEEVSYTLIRSWIVSMVDAEMSNTS 70

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           + R ++ +K+F K+L K K    + +   + LK    +    +E +    +D VL    +
Sbjct: 71  VNRKIASLKAFYKFLLKTKQIEINPLSKHKALKTPKKIQIPFSEAE----LDTVLTQIQY 126

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
           +  +   R+  I+ L Y  G+R SE +SL   N      T+++ GK +K RI+PLLP + 
Sbjct: 127 KAGFEGMRDKLIIDLFYTTGIRRSELISLQISNTNLVAGTIKVIGKRNKERIIPLLPVII 186

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIR-------GKPLNPGVFQRYIRQLRRYLGLPLST 260
           K I  Y       L    QL L            G   N     R I      +   +  
Sbjct: 187 KQIKVY-------LAERKQLSLIVAKENLILLSNGNKANETFVYRLINDYFSNVSEKVKK 239

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           + H LRH+FATH+L++G DL SI+ +LGH  L++TQ+YTN    +    +  +Y   HP
Sbjct: 240 SPHMLRHTFATHMLNHGADLNSIKELLGHSSLASTQVYTN----SSLAELKNVYQNAHP 294


>gi|118462850|ref|YP_882918.1| site-specific tyrosine recombinase XerC [Mycobacterium avium 104]
 gi|118164137|gb|ABK65034.1| tyrosine recombinase XerC [Mycobacterium avium 104]
          Length = 301

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 139/304 (45%), Gaps = 28/304 (9%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L ++ G S  T ++Y  D R  L   AF  E    +     LS   +R+++S      + 
Sbjct: 15  LALQCGRSAHTRRAYLGDLRSLL---AFAGERGTGLDG---LSLPLLRSWLSAAAAGGVA 68

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +L R  S +K+F  +  +R + T      ++  K   +LP  L + QAL  +      
Sbjct: 69  RTTLARRTSAVKAFTAWAVRRGLLTADPAARLQVPKTHRTLPAVLRQDQALGAMAAAKNG 128

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            + +   I  R+  I+ +LY  G+R+SE   L   ++   +  +R+ GKG+K R VP   
Sbjct: 129 AA-QGDPIALRDRLIVEMLYATGIRVSELCGLDIDDVDTGRRLVRVLGKGNKQRSVPFGA 187

Query: 205 SVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL--------G 255
              +A+  +  D  P   N      L  G RG+ L+       +RQ R  +        G
Sbjct: 188 PAGEALHAWLADGRPALANAESGPALLLGARGRRLD-------VRQARTVVHQTIAAVSG 240

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            P     H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V        +  ++D
Sbjct: 241 AP-DMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSR----LRAVHD 295

Query: 316 QTHP 319
           Q HP
Sbjct: 296 QAHP 299


>gi|41409056|ref|NP_961892.1| site-specific tyrosine recombinase XerC [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41397415|gb|AAS05275.1| XerC [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 301

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 139/304 (45%), Gaps = 28/304 (9%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L ++ G S  T ++Y  D R  L   AF  E    +     LS   +R+++S      + 
Sbjct: 15  LALQCGRSAHTRRAYLGDLRSLL---AFAGERGTGLDG---LSLPLLRSWLSAAAAGGVA 68

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +L R  S +K+F  +  +R + T      ++  K   +LP  L + QAL  +      
Sbjct: 69  RTTLARRTSAVKAFTAWAVRRGLLTADPAARLQVPKTHRTLPAVLRQDQALGAMAAAKTG 128

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            + +   I  R+  I+ +LY  G+R+SE   L   ++   +  +R+ GKG+K R VP   
Sbjct: 129 AA-QGDPIALRDRLIVEMLYATGIRVSELCGLDIDDVDTGRRLVRVLGKGNKQRSVPFGA 187

Query: 205 SVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL--------G 255
              +A+  +  D  P   N      L  G RG+ L+       +RQ R  +        G
Sbjct: 188 PAGEALHAWLADGRPALANAESGPALLLGARGRRLD-------VRQARTVVHQTIAAVSG 240

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            P     H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V        +  ++D
Sbjct: 241 AP-DMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSR----LRAVHD 295

Query: 316 QTHP 319
           Q HP
Sbjct: 296 QAHP 299


>gi|314933431|ref|ZP_07840796.1| tyrosine recombinase XerC [Staphylococcus caprae C87]
 gi|313653581|gb|EFS17338.1| tyrosine recombinase XerC [Staphylococcus caprae C87]
          Length = 296

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 156/305 (51%), Gaps = 22/305 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +L  L++ER  S+ TL+SY  D  QF  FL     E + + T     Y + R +++ 
Sbjct: 5   QKTFLYMLKVERNFSEYTLKSYHDDLIQFNDFLV---SEHLDLAT---FEYKDARNYLAF 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             +  +   ++ R +S +++F +Y   +     +  + + + KK   LP+   E++    
Sbjct: 59  LYSHNLKRTTVSRKISTLRTFYEYWMTQDELIVNPFVQLVHPKKEQYLPQFFYEEEM--- 115

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               L  T  +      R+  I+ LLY  G+R+SE +++  ++I  +   +++ GKG+K 
Sbjct: 116 --EALFQTVEQDNKKGMRDRVIIELLYATGIRVSELINIKIKDIDMNLPGVKVLGKGNKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQ--LRRYL 254
           R +P     +++I  Y D      + + +  L   + G P+   GV  RY+    ++R  
Sbjct: 174 RFIPFGEFCKQSIERYLDEFQPRKSSDHEY-LIVNMSGAPITERGV--RYVLNDVVKRTA 230

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+      H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++     + ++Y
Sbjct: 231 GVT-DIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQ----LRKVY 285

Query: 315 DQTHP 319
              HP
Sbjct: 286 LNAHP 290


>gi|157803898|ref|YP_001492447.1| site-specific tyrosine recombinase XerD [Rickettsia canadensis str.
           McKiel]
 gi|157785161|gb|ABV73662.1| tyrosine recombinase [Rickettsia canadensis str. McKiel]
          Length = 308

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 96/297 (32%), Positives = 151/297 (50%), Gaps = 27/297 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L  ER LSK ++ SY+ D   F  +LA     ++ I T        IR +I     
Sbjct: 7   FLEMLLAERALSKNSIFSYKRDLFDFQNYLAKQKLSELNITT------ENIRNWIEYLAD 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS+ R +S IKS+ ++L     T  + +LN+   K  + LP  L+  Q    + +
Sbjct: 61  NDLQARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPKYQSKLPEILSIDQ----IKS 116

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST------LRIQGKG 194
           +L + S +      R +A+++LLY  GLR+SE +SL   +I+ ++ +        + GKG
Sbjct: 117 LLEYCSQDATPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNKMSGEVKKVFSVLGKG 176

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LF--RGIRGKPLNPGVFQRYI 247
           +K R++ +      +I++Y  L   D+ LN   P     LF    I G  +    F   +
Sbjct: 177 NKERVIIINEQAVISIVKY--LAIRDVFLNKAKPKNLIYLFPSSAIAGY-MTRQNFAMLL 233

Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +    Y GL P   + H LRHSFA+HLL  G DLR IQ +LGH  +STTQIYT++ +
Sbjct: 234 KSAALYAGLNPKHISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQT 290


>gi|56708541|ref|YP_170437.1| integrase/recombinase XerC [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89255722|ref|YP_513083.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica LVS]
 gi|110671012|ref|YP_667569.1| integrase/recombinase XerC [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115314216|ref|YP_762939.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156501676|ref|YP_001427741.1| phage integrase family protein [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|224457717|ref|ZP_03666190.1| phage integrase family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254367099|ref|ZP_04983133.1| integrase/recombinase xerC [Francisella tularensis subsp.
           holarctica 257]
 gi|254371168|ref|ZP_04987170.1| site-specific recombinase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875393|ref|ZP_05248103.1| integrase/recombinase xerC [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|290953429|ref|ZP_06558050.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313310|ref|ZP_06803933.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica URFT1]
 gi|56605033|emb|CAG46136.1| Integrase/recombinase XerC [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89143553|emb|CAJ78731.1| Integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica LVS]
 gi|110321345|emb|CAL09519.1| Integrase/recombinase XerC [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115129115|gb|ABI82302.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134252923|gb|EBA52017.1| integrase/recombinase xerC [Francisella tularensis subsp.
           holarctica 257]
 gi|151569408|gb|EDN35062.1| site-specific recombinase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|156252279|gb|ABU60785.1| phage integrase family protein [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|254841392|gb|EET19828.1| integrase/recombinase xerC [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159761|gb|ADA79152.1| integrase/recombinase XerC [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 292

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 162/315 (51%), Gaps = 31/315 (9%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+   N+L NL   +  S+ T+ +Y+ D  Q          + ++ + I  L++++I  +
Sbjct: 4   LEHINNFLDNLLYLKNYSQETINNYQRDLLQL--------NQALSDKNIISLTHSDILIW 55

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I K   Q    ++L+R LS ++SF  +L   +I +++    ++  K S  LP+ +N  + 
Sbjct: 56  IKKLHAQGNSPKTLQRKLSSVRSFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDEL 115

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D   ++ S++   I+AR+ A   LLY CG+R+SE  S+  ++I   Q  +R+ GKG
Sbjct: 116 AYLLD---INPSND---IEARDIACFDLLYSCGIRLSELSSVELKDISISQKNIRVTGKG 169

Query: 195 DKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +K RIV      L ++ + +     L P          LF    GK L     Q+ +   
Sbjct: 170 NKQRIVYFGTKTLSNLNRWLKIRDSLKPS------SDYLFISRDGKHLTNRSIQKRLEIF 223

Query: 251 -RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            ++Y    +    H LRHSFA+H+L +  DL +++ +LGH  +S+TQIYT++N +     
Sbjct: 224 AQKYASRHIH--PHMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQ---- 277

Query: 310 MMEIYDQTHPSITQK 324
           +  ++D+ HP   +K
Sbjct: 278 LASVFDKAHPRAKKK 292


>gi|315084829|gb|EFT56805.1| phage integrase, SAM-like domain protein [Propionibacterium acnes
           HL027PA2]
          Length = 331

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 161/336 (47%), Gaps = 52/336 (15%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L++L +ERGLS  T+Q+Y  D  ++  +L         I ++ +++  ++  F  +R
Sbjct: 10  EDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLGSRG-----IGSLAEVTRVDVEEF--RR 62

Query: 79  RTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               IG    S+ R +  +++  ++              M    +S  LP+AL+  Q  +
Sbjct: 63  HLDHIGLAPASVTRCVVAVRNLHRFAVGSGQLQADVTAGMSPGTRSRRLPKALSMDQVES 122

Query: 137 LVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNI---MDDQS-TLRIQ 191
           L+       + +T  ++  R++A+L LLYG G R+SE  +L   +I   +DD    LR+ 
Sbjct: 123 LL------AAPDTSTVEGLRDAALLELLYGTGARVSEVCALDVDDIRPVLDDPDLGLRLI 176

Query: 192 GKGDKIRIVPLLPSVRKAI--------LEYYDLCPFDLNL-------------------N 224
           GKGDK RIVPL     KA+          + ++   +  L                   N
Sbjct: 177 GKGDKERIVPLGSYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAEIGN 236

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSI 283
            +  L    RG+ L+       IR+     GL +   + H+LRHS+ATHLL  G D+R +
Sbjct: 237 GEHALLLNTRGRRLSRQSAWAVIRRAGEAAGLDVEHLSPHSLRHSYATHLLDGGADVRVV 296

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           Q +LGH  ++TTQIYT V +    D + E+Y  +HP
Sbjct: 297 QELLGHSSVTTTQIYTLVTA----DHLREVYRSSHP 328


>gi|196250937|ref|ZP_03149621.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|196209578|gb|EDY04353.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 301

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 91/289 (31%), Positives = 144/289 (49%), Gaps = 26/289 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-I 83
           L+IE+  S  T+  Y  D R F  FL    +   ++Q +  ++ T +R FI  + T++ +
Sbjct: 14  LQIEKNYSLNTVDGYAYDLRCFENFL---IQHGYSVQ-LNDITKTHVRRFIQHQITKENV 69

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
             R++ R +S +KSF KY  K  +     ++ +   K  + LP  +    +L+ +  +  
Sbjct: 70  KPRTIYRRISCLKSFSKYCVKENLIDSDFMIGIDTPKTDSKLPTYM----SLSELRKLFH 125

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
               +   +  RN  +  LL   G+R SE + LT + I    +T+RI GKG K R++PL 
Sbjct: 126 FLEQDNSRMAMRNHLLFKLLATTGMRRSEIVELTWEQIDLSNNTIRIYGKGKKERLLPLH 185

Query: 204 PSVRKAI------LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           P V   I      LE Y L P         P+F    GK LNP    +  +++ +  GLP
Sbjct: 186 PMVVPLIKSYMGSLEEYQLHP-------SQPVFLNKNGKKLNPRGLHKIFKEILQKAGLP 238

Query: 258 LST-TAHTLRHSFATHLLSNGG---DLRSIQSILGHFRLSTTQIYTNVN 302
               + H LRH+FAT L+       DLR++Q +LGH  L TTQ+YT+V+
Sbjct: 239 PQRFSLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVD 287


>gi|84393557|ref|ZP_00992311.1| tyrosine recombinase [Vibrio splendidus 12B01]
 gi|84375836|gb|EAP92729.1| tyrosine recombinase [Vibrio splendidus 12B01]
          Length = 310

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 149/302 (49%), Gaps = 16/302 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  E+GLS  T ++Y+         L       + ++   Q+    +R   SK   + + 
Sbjct: 24  LRSEKGLSLHTQRNYKQQLETMAAHLV-----TLGLKDWGQVDAAWVRQLASKGMREGMK 78

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S+   LS ++SF  +L  R   T +    +   +K   LP+ L+  +   L+D     
Sbjct: 79  ASSIATRLSSLRSFFDFLVLRGEMTANPAKGVSAPRKQRPLPKNLDVDEVGQLLD----- 133

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
             +E   +  R+ A++ ++YG GLR++E + +  ++++  Q  +R+ GKGDK R  P   
Sbjct: 134 -VNEDDPLSIRDRAMMEVMYGAGLRLAELVGINLKDVLGRQGEIRVIGKGDKERKAPF-S 191

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            + K  ++ +     DL    +  LF    G  ++    Q+ + +  +   +    + H 
Sbjct: 192 GLAKEWVDKWLKVRGDLASPGEKALFVSKLGTRISHRSVQKRMEEWGKKQSVASHISPHK 251

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ ++    + + YDQ HP   +K
Sbjct: 252 LRHSFATHVLESSQNLRAVQELLGHENISTTQIYTHLDFQH----LAQAYDQAHPRARKK 307

Query: 325 DK 326
           +K
Sbjct: 308 NK 309


>gi|45442956|ref|NP_994495.1| site-specific tyrosine recombinase XerC [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108806177|ref|YP_650093.1| site-specific tyrosine recombinase XerC [Yersinia pestis Antiqua]
 gi|108810287|ref|YP_646054.1| site-specific tyrosine recombinase XerC [Yersinia pestis Nepal516]
 gi|145600710|ref|YP_001164786.1| site-specific tyrosine recombinase XerC [Yersinia pestis Pestoides
           F]
 gi|153948314|ref|YP_001399204.1| site-specific tyrosine recombinase XerC [Yersinia
           pseudotuberculosis IP 31758]
 gi|153997101|ref|ZP_02022234.1| putative integrase/recombinase [Yersinia pestis CA88-4125]
 gi|161484900|ref|NP_667725.2| site-specific tyrosine recombinase XerC [Yersinia pestis KIM 10]
 gi|162418493|ref|YP_001605136.1| site-specific tyrosine recombinase XerC [Yersinia pestis Angola]
 gi|165926246|ref|ZP_02222078.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165939104|ref|ZP_02227655.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011640|ref|ZP_02232538.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166213553|ref|ZP_02239588.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167401874|ref|ZP_02307362.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167420989|ref|ZP_02312742.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167426292|ref|ZP_02318045.1| tyrosine recombinase XerC [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167468815|ref|ZP_02333519.1| site-specific tyrosine recombinase XerC [Yersinia pestis FV-1]
 gi|170026220|ref|YP_001722725.1| site-specific tyrosine recombinase XerC [Yersinia
           pseudotuberculosis YPIII]
 gi|218930846|ref|YP_002348721.1| site-specific tyrosine recombinase XerC [Yersinia pestis CO92]
 gi|229837173|ref|ZP_04457338.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A]
 gi|229839533|ref|ZP_04459692.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229900096|ref|ZP_04515233.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229900458|ref|ZP_04515587.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516]
 gi|270488812|ref|ZP_06205886.1| tyrosine recombinase XerC [Yersinia pestis KIM D27]
 gi|294505507|ref|YP_003569569.1| tyrosine recombinase [Yersinia pestis Z176003]
 gi|34222851|sp|Q8D1K0|XERC_YERPE RecName: Full=Tyrosine recombinase xerC
 gi|45437823|gb|AAS63372.1| putative integrase/recombinase [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108773935|gb|ABG16454.1| tyrosine recombinase XerC subunit [Yersinia pestis Nepal516]
 gi|108778090|gb|ABG12148.1| tyrosine recombinase XerC subunit [Yersinia pestis Antiqua]
 gi|115349457|emb|CAL22430.1| putative integrase/recombinase [Yersinia pestis CO92]
 gi|145212406|gb|ABP41813.1| tyrosine recombinase XerC subunit [Yersinia pestis Pestoides F]
 gi|149289407|gb|EDM39485.1| putative integrase/recombinase [Yersinia pestis CA88-4125]
 gi|152959809|gb|ABS47270.1| tyrosine recombinase XerC [Yersinia pseudotuberculosis IP 31758]
 gi|162351308|gb|ABX85256.1| tyrosine recombinase XerC [Yersinia pestis Angola]
 gi|165912877|gb|EDR31503.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165921770|gb|EDR38967.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165989409|gb|EDR41710.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166205226|gb|EDR49706.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166961118|gb|EDR57139.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167048767|gb|EDR60175.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167054811|gb|EDR64615.1| tyrosine recombinase XerC [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169752754|gb|ACA70272.1| tyrosine recombinase XerC [Yersinia pseudotuberculosis YPIII]
 gi|229682477|gb|EEO78564.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516]
 gi|229686876|gb|EEO78955.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229695899|gb|EEO85946.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229706116|gb|EEO92125.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A]
 gi|262363573|gb|ACY60294.1| tyrosine recombinase [Yersinia pestis D106004]
 gi|262367501|gb|ACY64058.1| tyrosine recombinase [Yersinia pestis D182038]
 gi|270337316|gb|EFA48093.1| tyrosine recombinase XerC [Yersinia pestis KIM D27]
 gi|294355966|gb|ADE66307.1| tyrosine recombinase [Yersinia pestis Z176003]
 gi|320013559|gb|ADV97130.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 303

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 151/309 (48%), Gaps = 17/309 (5%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           S  L  + + +L+ L IER LS LT+ SY    RQ    +     E++ +   + L   +
Sbjct: 5   SASLAPQVEAFLRYLSIERQLSPLTVTSYR---RQLSALMEI--GEQMGLAHWQTLDAAQ 59

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +R+ +S+ +   +   SL   LS ++SFL +L  + +   +    +   +    LP+ ++
Sbjct: 60  VRSLVSRSKRAGLHASSLALRLSALRSFLNWLVSQGVLPANPAKGVSTPRSGRHLPKNID 119

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             +   L+   L         +  R+ A+L ++YG GLR+SE + +  +++      + +
Sbjct: 120 VDEVNKLLSIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGMNCKHVDLASGDVWV 173

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG K R VPL  +    +  +  L   +L       +F    GK ++    Q+   + 
Sbjct: 174 MGKGSKERKVPLGKTAVTWLQHWLALR--ELFEPQDDAIFLANTGKRISARNVQKRFAEW 231

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+      H LRHSFATH+L + GDLR++Q +LGH  L+TTQIYT+++ ++    +
Sbjct: 232 GVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----L 287

Query: 311 MEIYDQTHP 319
             +YD  HP
Sbjct: 288 ATVYDAAHP 296


>gi|304407019|ref|ZP_07388673.1| integrase family protein [Paenibacillus curdlanolyticus YK9]
 gi|304344006|gb|EFM09846.1| integrase family protein [Paenibacillus curdlanolyticus YK9]
          Length = 316

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 152/318 (47%), Gaps = 17/318 (5%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           ++L E ++ ++  E Q++L++   +R LS+ TL SYE D R F+ F A        I   
Sbjct: 11  HSLSEGIAGQMETELQSFLRDWPADRSLSESTLMSYERDLRHFIRFAA-----DAGISAP 65

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
            Q+    +  +    R +   + SL R    +++F +YL  ++  T     +M   K  +
Sbjct: 66  EQVQKHHMARYWLTLRQEGRKNASLSRYRVSLRAFFRYLMDKQRVTADPTADMDAPKPDS 125

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
             PR L   Q       +LL +    +    R+SAIL  +Y  G+R+SE ++L  +++  
Sbjct: 126 PPPRILTAVQV-----ELLLASPDPAEPSGLRDSAILETMYATGIRVSELIALDLEHVHV 180

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPG 241
               +R      K RIVP+  +   ++  Y       L  + + +  +F   RG+ +   
Sbjct: 181 SLGFIRCSANA-KERIVPIGRAASASLEAYLQSGRERLLRDNSEEQAVFINRRGERMTRQ 239

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              + +++      +    T H+LRHSFA HLL NG D+R++Q ++GH  L+ TQ Y ++
Sbjct: 240 GLWKIVKKHAALASIEGDLTPHSLRHSFAAHLLENGADVRAVQEMMGHAGLAATQKYVHL 299

Query: 302 NSKNGGDWMMEIYDQTHP 319
                   M E+Y+++HP
Sbjct: 300 TKSR----MKEVYERSHP 313


>gi|161611265|ref|YP_294803.2| site-specific tyrosine recombinase XerD [Ralstonia eutropha JMP134]
          Length = 305

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 143/297 (48%), Gaps = 17/297 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E GLS+ T+ +Y    R+ L  LA +  +  +   +  +  TE+ A+   R  +   
Sbjct: 22  LWLEDGLSRNTMDAY----RRDLSMLARWLHQS-SNGGLLGIGDTELNAYFLARHPETRA 76

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R L+  + F ++  + ++      + +R  K+   +P+ L+E Q        LL 
Sbjct: 77  SSS-NRRLAVFRRFYQWALREQMIEADPCILLRPAKQPPRVPKTLSEAQV-----EALLE 130

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLL 203
               T  +  R+  +L L+Y  GLR+SE   +    I  ++   R+  GKGDK R+VP  
Sbjct: 131 APDTTTPLGLRDRTMLELMYASGLRVSELTQMKTVEIGLNEGVARVVGGKGDKERLVPFG 190

Query: 204 PSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
                 +  Y     P  L       LF   RG+ +    F   I++  R  G+    + 
Sbjct: 191 MQASDWLRRYLGSARPALLAGRACDALFVTQRGEGMTRQAFWHLIKRHARDAGITAPLSP 250

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     + E++ Q HP
Sbjct: 251 HTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER----LRELHQQHHP 303


>gi|167718388|ref|ZP_02401624.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           DM98]
          Length = 299

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/277 (30%), Positives = 135/277 (48%), Gaps = 15/277 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +E GLS+ TL +Y  D + F  +LA       ++    + + TE   +I+ R   K    
Sbjct: 20  LEHGLSRNTLDAYRRDLQLFAQWLA--ARHAASVDHASEPTLTE---YIAARSDGKAT-- 72

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R LS  + +  +  +         L + + K++   P  L+E Q   L+    + T 
Sbjct: 73  SSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTP 132

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+VP    V
Sbjct: 133 -----LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPF-GEV 186

Query: 207 RKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
               +E Y  D  P  L       LF   RG  +    F   I++  +   + +  + HT
Sbjct: 187 AHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHT 246

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 247 LRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 283


>gi|330685662|gb|EGG97303.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU121]
          Length = 297

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 154/306 (50%), Gaps = 30/306 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L++ER  S  TL+SY  D  QF  FL  Y E       +    Y + R ++S   +
Sbjct: 8   FLYMLKVERNFSDHTLKSYRDDIVQFNDFL--YQES----LDLNDFEYKDARNYLSFLYS 61

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   ++ R +S +++F +Y   +  +  +  + + + KK   LP+   E++       
Sbjct: 62  KNLKRTTVSRKISTLRTFYEYWMTQDESVVNPFVQLVHPKKEQYLPQFFYEEEM-----E 116

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            L  T         R+  IL LLY  G+R+SE + +  Q++      +++ GKG+K R +
Sbjct: 117 ALFKTVETDSKKGMRDKVILELLYATGIRVSELVHIKTQDLDMKLPGVKVLGKGNKERFI 176

Query: 201 PL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQ--LRRY 253
           P       S+ + + E+  L   D +      L   ++G+P+   GV  RY+    ++R 
Sbjct: 177 PFGEFCKQSIERYLKEFKPLKHVDHDY-----LIVNMQGQPITERGV--RYVLNDVVKRT 229

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+  +   H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++     + ++
Sbjct: 230 SGVT-NIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ----LRKV 284

Query: 314 YDQTHP 319
           Y   HP
Sbjct: 285 YLNAHP 290


>gi|290477110|ref|YP_003470023.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004]
 gi|289176456|emb|CBJ83265.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004]
          Length = 304

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 157/314 (50%), Gaps = 32/314 (10%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL+  + +L  L +ER LS LT+ +Y    R+ L+ LA  + + + I   + L   ++R 
Sbjct: 8   LLEPVETFLHYLRVERRLSPLTITNY----RRHLVVLASMSLD-MGIHEWQALDPAKVRM 62

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F S+ R   +   SL   LS +++FL ++  +     +    +   +K   LP+ ++  +
Sbjct: 63  FASRSRRAGLQSASLALRLSSLRTFLDWMVIQGELDANPAKAVSAPRKKRHLPKNMDVDE 122

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+ N+ L+       +  R+  ++ ++YG GLR+SE + L  +++      + +QGK
Sbjct: 123 VNQLL-NINLNDP-----LSVRDRTMMEVMYGAGLRLSELVGLDCRHLELASGEVWVQGK 176

Query: 194 GDKIRIVPLLPSVRKAILEYYD--------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
           G K R VP    V +  LE+            P D  + I     + I  + +     Q 
Sbjct: 177 GSKERKVP----VGRIALEWLQRWLEMRELFEPEDNAVFISTKSGKRISARNVQKRFEQW 232

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +RQ     G+      H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++
Sbjct: 233 GVRQ-----GVNSHIHPHKLRHSFATHILESSGDLRAVQELLGHANLSTTQIYTHLDFQH 287

Query: 306 GGDWMMEIYDQTHP 319
               + ++YD  HP
Sbjct: 288 ----LAKVYDVAHP 297


>gi|271502380|ref|YP_003335406.1| tyrosine recombinase XerC [Dickeya dadantii Ech586]
 gi|270345935|gb|ACZ78700.1| tyrosine recombinase XerC [Dickeya dadantii Ech586]
          Length = 302

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 145/298 (48%), Gaps = 17/298 (5%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L +ER LS LT +SY     Q  + +   +   +T  +   L    +RA +++ +  
Sbjct: 15  LRYLRVERQLSPLTQRSY---AHQLQVIIEMLSASGVTDWS--SLDAAGVRAVVARSKRD 69

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +   SL + LS ++SFL +L  R     +    +   K    LP+ ++  +   L+D  
Sbjct: 70  GLNAASLAQRLSALRSFLDWLVGRGELKANPARGVPAPKAGRHLPKNMDVDEMDRLLDID 129

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           L         +  R+ A+L ++YG GLR++E + L   ++  +   + + GKG K R +P
Sbjct: 130 L------NDPLAVRDRAMLEVMYGAGLRLAELVGLDCGHVNLESGEIWVMGKGSKERKLP 183

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           +  +    +  +  L   D+       +F    G+ ++    Q+   +     G+     
Sbjct: 184 VGATAVTWLTHW--LAIRDIYAPEDDAVFVSSLGRRISMRNVQKRFAEWGVKQGVNSHVH 241

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++    +  +YD  HP
Sbjct: 242 PHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 295


>gi|187931223|ref|YP_001891207.1| site-specific recombinase [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712132|gb|ACD30429.1| site-specific recombinase [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 292

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 162/315 (51%), Gaps = 31/315 (9%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+   N+L NL   +  S+ T+ +Y+ D  Q          + ++ + I  L++++I  +
Sbjct: 4   LEHINNFLDNLLYLKNYSQETINNYQRDLLQL--------NQALSDKNIISLTHSDILIW 55

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I K   Q    ++L+R LS ++SF  +L   +I +++    ++  K S  LP+ +N  + 
Sbjct: 56  IKKLHAQGNSPKTLQRKLSSVRSFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDEL 115

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D   ++ S++   I+AR+ A   LLY CG+R+SE  S+  ++I   Q  +R+ GKG
Sbjct: 116 AYLLD---INPSND---IEARDIACFDLLYSCGIRLSELSSVELKDISISQKNIRVTGKG 169

Query: 195 DKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +K RIV      L ++ + +     L P          LF    GK L     Q+ +   
Sbjct: 170 NKQRIVYFGTKTLSNLSRWLKIRDSLKPS------SDYLFISRDGKHLTNRSIQKRLEIF 223

Query: 251 -RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            ++Y    +    H LRHSFA+H+L +  DL +++ +LGH  +S+TQIYT++N +     
Sbjct: 224 AQKYASRHIH--PHMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQ---- 277

Query: 310 MMEIYDQTHPSITQK 324
           +  ++D+ HP   +K
Sbjct: 278 LASVFDKAHPRAKKK 292


>gi|320539384|ref|ZP_08039053.1| site-specific tyrosine recombinase [Serratia symbiotica str.
           Tucson]
 gi|320030509|gb|EFW12519.1| site-specific tyrosine recombinase [Serratia symbiotica str.
           Tucson]
          Length = 303

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 150/300 (50%), Gaps = 21/300 (7%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L++ER LS LT  SY     Q L+ LA    + I +     L    +R    + +  
Sbjct: 16  LRYLKVERQLSPLTQLSY-AHQLQALMLLA----QSIGVSEWTSLDAAAVRMLAVRSKRA 70

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +   SL   LS ++SFL +L  + +   +    +R  +    LP+ ++  +   L+D  
Sbjct: 71  GLQSASLALRLSSLRSFLDWLVSQGVLNANPAKGIRTPRSGRHLPKNIDVDEMNQLLDID 130

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           L         +  R+ A+L  +YG GLR+SE + L  ++I      + + GKG K R +P
Sbjct: 131 L------NDPLAVRDRAMLETMYGAGLRLSELVGLDCRHIDLAAGEIWVMGKGSKERKLP 184

Query: 202 LLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           L    R A+  L+++ L   +L       +F   +G+ ++P   Q+   +     G+   
Sbjct: 185 L---GRTAVTWLQHW-LAIRELFEPEDDAIFLSNQGRRISPRNVQKRFAEWGVKQGVNSH 240

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRHSFATH+L + GDLR++Q +LGH  L+TTQIYT+++ ++    + ++YD  HP
Sbjct: 241 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----LAKVYDAAHP 296


>gi|302528010|ref|ZP_07280352.1| tyrosine recombinase XerD [Streptomyces sp. AA4]
 gi|302436905|gb|EFL08721.1| tyrosine recombinase XerD [Streptomyces sp. AA4]
          Length = 310

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 145/307 (47%), Gaps = 21/307 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L +L +ERG ++ TL SY  D R++   L     E   +  + +++   + +F +  R
Sbjct: 14  TYLDHLVVERGTARNTLDSYSRDLRRYAAHL-----EAAGVVRLAEVTPAHVTSFGAALR 68

Query: 80  T-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
                 Q +   S  R+L  ++   K+     +T      ++R    +  LP+AL     
Sbjct: 69  EGDEEHQPLAASSAARALVAVRGLHKFAHADGLTEHDPARDVRPPAAAKRLPKALPVADV 128

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           L L+D     T         R+ A+L LLY  G RISEA+ L   ++ D + T+ + GKG
Sbjct: 129 LKLLD-----TPPRDGERALRDRALLELLYSTGARISEAVGLDVDDVDDTERTVLLDGKG 183

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRR 252
            K R+VP+     +A+  Y       L  N +    +F   RG  L+     + ++    
Sbjct: 184 GKQRLVPIGRPALEALDAYLVRARPALAANGRGTSAIFLNARGSRLSRQSAWQVLKDTAE 243

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+  + + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQ+YT V        + E
Sbjct: 244 RAGITAAVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTVTT----LRE 299

Query: 313 IYDQTHP 319
           +Y   HP
Sbjct: 300 VYATAHP 306


>gi|157377259|ref|YP_001475859.1| tyrosine recombinase XerC [Shewanella sediminis HAW-EB3]
 gi|157319633|gb|ABV38731.1| tyrosine recombinase XerC [Shewanella sediminis HAW-EB3]
          Length = 301

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 152/315 (48%), Gaps = 37/315 (11%)

Query: 21  WLQNLE----IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI----- 71
           W Q  E     ER LSK T+++Y             Y  E+++ +     S+ ++     
Sbjct: 5   WFQKFESYLSAERQLSKHTVRNY------------LYELERVSKRLDETTSWLDVTREQL 52

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           +  +S+   Q +  RS+  +LS IK F  +L        +  +++   K++  LP+ ++ 
Sbjct: 53  QGALSQIHRQGLSPRSISLTLSAIKQFCDFLLAEGAIQANPAMSLSAPKQNKPLPKNMD- 111

Query: 132 KQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
                 +D+V  LL    +   +  R+ AI+ L Y  GLR++E  +L  ++I   +  ++
Sbjct: 112 ------LDSVTHLLEIDGDDP-LSVRDKAIMELFYSSGLRLAELAALDVKDIDFGERQVK 164

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG K RIVP+      AI E +  C   +       LF   +GK L     Q  + +
Sbjct: 165 VMGKGSKERIVPIGNMAMNAI-ECWLTCRKGIVCE-DGALFVTGKGKRLAHRSIQARLAK 222

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +   L +    H LRHSFATH+L +  DLR++Q +LGH  LSTTQIYT+++ ++    
Sbjct: 223 WGQEQALNMRVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQIYTSLDFQH---- 278

Query: 310 MMEIYDQTHPSITQK 324
           + ++YD  HP    K
Sbjct: 279 LAKVYDGAHPRAKAK 293


>gi|163748706|ref|ZP_02155959.1| integrase/recombinase XerC [Shewanella benthica KT99]
 gi|161331816|gb|EDQ02620.1| integrase/recombinase XerC [Shewanella benthica KT99]
          Length = 308

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 154/320 (48%), Gaps = 33/320 (10%)

Query: 20  NWLQNLEI----ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAF 74
           NW +  E     ER LS  T+++Y  +  +    L    EE   +  +  ++S+ +I+  
Sbjct: 4   NWFKRFESYCRSERQLSAHTVRNYLYELHRVSAKL----EENACLSFLWSEVSHEQIQHV 59

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + +   Q +  RSL  +LS +K F  +L    +   +   ++   K++  LP+ ++    
Sbjct: 60  LGQLHRQGLSPRSLSLTLSAVKQFCDFLLGEGVINANPAKSLSAPKQNKPLPKNMDLDSV 119

Query: 135 LTLVDNVLLHTSHETKWIDA------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
             L++            IDA      R+ AI+ L Y  GLR++E  +L    I   +  +
Sbjct: 120 THLLE------------IDADDLLSVRDKAIMELFYSSGLRLAELAALDVLAIRFAERQV 167

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           ++ GKG K RIVP+     +AI  +  L   +  L     LF   +GK L     Q  + 
Sbjct: 168 KVLGKGSKERIVPVGRCAIQAIQAWLAL--RESILCQDEALFVTAKGKRLAHRSIQARLA 225

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +  +   L +    H LRHSFATH+L +  DLR++Q +LGH  LSTTQIYT+++ ++   
Sbjct: 226 KWGQEQALNMRVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQIYTSLDFQH--- 282

Query: 309 WMMEIYDQTHPSITQKDKKN 328
            + ++YD  HP  ++  K N
Sbjct: 283 -LAKVYDGAHPRASRAKKLN 301


>gi|309775337|ref|ZP_07670345.1| putative tyrosine recombinase XerD [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916919|gb|EFP62651.1| putative tyrosine recombinase XerD [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 309

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 142/299 (47%), Gaps = 19/299 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +LQ   I + L+  TL++Y+ D +QFL F+  Y+ +         +    + A+I+    
Sbjct: 13  YLQECSIAKELNAHTLKAYQIDLKQFLSFMELYSYD---------IQKESLHAYITHLHK 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN-LKKSNSLPRALNEKQALTLVD 139
                +++KR ++ I +   YL        + +  +R   ++   LPR +      ++  
Sbjct: 64  TYQKPKTIKRKIASINALFSYLVFHDFIETNPMSRLRTAFREPRLLPRTIPNSHLSSIFS 123

Query: 140 NVL-----LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
            V        TS++ K +  RN+A+L LL+  G+R+SE   +    I   +  +RI GKG
Sbjct: 124 RVYDEMKDCKTSYQRK-VCTRNAAVLELLFSTGMRVSELCHVKDDEINLRERYVRIYGKG 182

Query: 195 DKIRIVPLL-PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            K RI+ +  P V K +  Y  L  F   +      F    G PL+    +  I +  + 
Sbjct: 183 AKERILQIGNPDVLKILYSYRAL--FQKEIETSGYFFINKLGNPLSEQSVRLLIARYEKI 240

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           L +P   T H  RH+FAT LL    D+R IQ ILGH  ++TTQIYT+++S    + + +
Sbjct: 241 LKIPQHLTPHMFRHTFATQLLEEDVDIRYIQHILGHSSITTTQIYTHISSNKQKEILYQ 299


>gi|167585653|ref|ZP_02378041.1| site-specific tyrosine recombinase XerD [Burkholderia ubonensis Bu]
          Length = 315

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 139/297 (46%), Gaps = 19/297 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E GL++ TL +Y  D   F  +LA   +  + +          +  +I+ R   K  
Sbjct: 34  LWLEHGLARNTLDAYRRDLALFAQWLAATHDASLDVA-----DEMMVTGYIAARSDGKA- 87

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R LS  + +  +  +    +    L + + K++   P  L+E Q   L+    + 
Sbjct: 88  -TSSNRRLSVFRRYYGWAVREHRASADPTLRITSAKQAARFPSTLSEAQVEALLGAPDVD 146

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           T      +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+VP   
Sbjct: 147 TP-----LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPF-G 200

Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            V    +E Y     P  L       LF   RG  +    F   I++  R   +    + 
Sbjct: 201 EVAHGWIERYLRHARPALLGARAADALFVTARGDGMTRQQFWNIIKRHARQADVRAHLSP 260

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++ Q HP
Sbjct: 261 HTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARER----LRTLHAQHHP 313


>gi|91791760|ref|YP_561411.1| tyrosine recombinase XerC [Shewanella denitrificans OS217]
 gi|91713762|gb|ABE53688.1| Tyrosine recombinase XerC [Shewanella denitrificans OS217]
          Length = 321

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 145/303 (47%), Gaps = 26/303 (8%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
            + L+L  Y   T Q     +  T+E+        LS+  ++A ++K   Q +  RSL  
Sbjct: 40  FTTLSLPEYAAQTSQTNAITSPQTDEQWLA-----LSHEALQALLAKLHRQGLSPRSLSL 94

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--LLHTSHE 148
            LS +K F +YL      T +    +   K++  LP+ ++       VD +  LL    +
Sbjct: 95  CLSALKQFFEYLLAEDCITHNPAKGLSAPKQAKPLPKNID-------VDAISHLLAIDGD 147

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
              +  R+ AI+ L Y  GLR+ E  SL   +I      +++ GKG K R VP    V K
Sbjct: 148 DPLV-IRDRAIMELFYSSGLRLGELASLNYGDIHLGLQEVKVLGKGGKERRVP----VGK 202

Query: 209 AILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
             +E   L      L +Q     LF   +GK L+    Q  + +  +   L +    H L
Sbjct: 203 LAMEALALWHTQRLLLVQADEPALFVSNQGKRLSHRSIQARMAKWGQNQALSVPVHPHKL 262

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           RHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++    + ++YD  HP   +  
Sbjct: 263 RHSFATHMLESSGDLRAVQELLGHANLSTTQIYTSLDFQH----LAKVYDGAHPRAKKGR 318

Query: 326 KKN 328
           +K 
Sbjct: 319 EKG 321


>gi|56696516|ref|YP_166873.1| tyrosine recombinase XerD [Ruegeria pomeroyi DSS-3]
 gi|56678253|gb|AAV94919.1| tyrosine recombinase XerD [Ruegeria pomeroyi DSS-3]
          Length = 319

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 93/294 (31%), Positives = 142/294 (48%), Gaps = 24/294 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L     E G +  TL +Y  D + F  +L    E +    T+       + A++    
Sbjct: 14  TFLDAQAAELGAANNTLLAYGRDLKDFTDWL----ERRGA--TLNGAERDTVEAYLVDCD 67

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q +   +  R LS IK   ++        ++  + ++   +  SLP+ L     +  VD
Sbjct: 68  AQGLARATRARRLSAIKQLYRFAFDEGWRADNPAIQIKGPGRLKSLPKTLE----VIEVD 123

Query: 140 NVLLHTSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
             LL  + +T    A   RN+ ++ LLY  G+R+SE +SL       D   L ++GKG K
Sbjct: 124 R-LLEAARQTGRTSADRLRNTCLMELLYATGMRVSELVSLPATAARGDPRMLLVRGKGGK 182

Query: 197 IRIVPLLPSVRKAILEYY---DLCPFD-----LNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            R+VPL P  R A+  +    D    D     +  +  L   RG  G  L    F   I+
Sbjct: 183 ERMVPLSPPARAALAAWLTVRDAAEEDGARRGIARSPHLFPSRGKSGH-LTRHRFYLLIK 241

Query: 249 QLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +L    G+ P + T HTLRH+FATHLL+NG DLR+IQ++LGH  +STT+IYT+V
Sbjct: 242 ELAVAGGVSPDTVTPHTLRHAFATHLLANGADLRTIQTLLGHADVSTTEIYTHV 295


>gi|269836497|ref|YP_003318725.1| integrase family protein [Sphaerobacter thermophilus DSM 20745]
 gi|269785760|gb|ACZ37903.1| integrase family protein [Sphaerobacter thermophilus DSM 20745]
          Length = 306

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 141/294 (47%), Gaps = 11/294 (3%)

Query: 15  LKER-QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++ER + +L  L  +RG S  T+ +Y  D  QF  FL     E+  +Q+  +L+ T +  
Sbjct: 1   MEERIERFLAALGRDRGFSPNTVSAYRNDLSQFCHFLC----EQHVLQSWAELTGTILTN 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++   R +   + ++ R ++ +KSF  YL +           + + K    +PRA+  +Q
Sbjct: 57  YVLYLRERGYANATVARKVAAVKSFCHYLVECGELRHDPAAELPSPKVDKFIPRAITPEQ 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
               V+ +L   + E      R+ A+L  LY  G+R+SE  +L   ++  +   +R   K
Sbjct: 117 ----VEALLAQPARERTPEALRDKAMLETLYASGMRVSELTALNVDDLDLEAGRVRCGNK 172

Query: 194 GDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
            ++ R VPL  S   A+ EY  L  PF      +  LF   RG  L    F   ++    
Sbjct: 173 PERQRWVPLSSSAIAALDEYLQLGRPFLRQSPAEQALFLNHRGSRLTRQGFWLILKSYAE 232

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
              L    T HTLRH+FA H L+ G  LR +Q +LGH  +STTQ+Y  V ++ G
Sbjct: 233 AAELG-DITPHTLRHTFAAHALTRGRALREVQQVLGHVSISTTQVYQQVAAQVG 285


>gi|87309301|ref|ZP_01091437.1| integrase/recombinase [Blastopirellula marina DSM 3645]
 gi|87287940|gb|EAQ79838.1| integrase/recombinase [Blastopirellula marina DSM 3645]
          Length = 291

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 144/299 (48%), Gaps = 22/299 (7%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L+ E  L+  T+ +Y  D  +F        E  +  + IR L   E+  +++    +++ 
Sbjct: 9   LQSECHLAANTVAAYRRDLVRF--------ERWLGAREIRTLRVGELSDYVAWLYKEELA 60

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S+ R++  +K F +YL+   I  +    N+  L  S  + R +    A   +D++L  
Sbjct: 61  PASIARAVVSLKIFFRYLQLEGILQD----NLVELLGSQKIWRRIPSVIAPHKIDDLLTA 116

Query: 145 T-SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
             S +  W   R+ A+L +LY  G R SE   L   ++  D+  ++ +GKG K RI PL 
Sbjct: 117 PWSEDPYW--RRDRALLEVLYATGCRASEVSGLRMDDVHLDEGYVKCEGKGSKQRIAPLA 174

Query: 204 PSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
               + +  Y D     L   NL     LF    GK L+       +++     G+    
Sbjct: 175 QKSARVVKTYLDEERPRLSKKNLRDAAFLFLSRSGKRLSRIAIWELVKKYAARAGIDPDV 234

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           + H+LRHSFATHLL+ G DLR +Q ++GH  ++TTQIYT+V+       + +++ Q HP
Sbjct: 235 SPHSLRHSFATHLLAGGADLRHVQEMMGHASIATTQIYTHVDQSR----LKKVHAQYHP 289


>gi|239636270|ref|ZP_04677272.1| tyrosine recombinase XerC [Staphylococcus warneri L37603]
 gi|239597625|gb|EEQ80120.1| tyrosine recombinase XerC [Staphylococcus warneri L37603]
          Length = 297

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 159/309 (51%), Gaps = 30/309 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +L  L++ER  S  TL+SY  D  QF  FL  Y E       +    Y + R ++S 
Sbjct: 5   QKAFLYMLKVERHFSDHTLKSYHDDIVQFNDFL--YQES----LDLNDFEYKDARNYLSF 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             ++ +   ++ R +S +++F +Y   +  +  +  + + + KK   LP+   E++   L
Sbjct: 59  LYSKNLKRTTVSRKISTLRTFYEYWMTQDESVVNPFVQLVHPKKEQYLPQFFYEEEMEAL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
              V    +   K +  R+  IL LLY  G+R+SE + +  Q++      +++ GKG+K 
Sbjct: 119 FKTV---DTDSKKGM--RDKVILELLYATGIRVSELVHIKTQDLDMKLPGVKVLGKGNKE 173

Query: 198 RIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQ--L 250
           R +P       S+ + + E+  L   D +      L   ++G+P+   GV  RY+    +
Sbjct: 174 RFIPFGEFCKQSIERYLKEFKPLKHVDHDY-----LIVNMQGQPITERGV--RYVLNDVV 226

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           +R  G+  +   H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++     +
Sbjct: 227 KRTSGVT-NIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ----L 281

Query: 311 MEIYDQTHP 319
            ++Y   HP
Sbjct: 282 RKVYLNAHP 290


>gi|148652162|ref|YP_001279255.1| phage integrase family protein [Psychrobacter sp. PRwf-1]
 gi|148571246|gb|ABQ93305.1| tyrosine recombinase XerC subunit [Psychrobacter sp. PRwf-1]
          Length = 341

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 150/319 (47%), Gaps = 19/319 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL   + WL  L + R +S  T+ +Y     Q   FLA   +   T    RQL+      
Sbjct: 33  LLPPVEQWLSELSV-RQMSAHTIDAYYAGLYQLACFLA-QAQLNWTRCDKRQLA-----K 85

Query: 74  FISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +I+KR  T  +   S+++ LS I+ F  +L ++     +     +  +    LP   +  
Sbjct: 86  YIAKRLDTDALAISSVQQELSAIRHFYSWLIEQGQARINPTTGYQLKRAPRPLPSIADGD 145

Query: 133 QALTLVDNVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDD----QST 187
               L++  +  T  + + WI  R+ A+  LLY  GLR+ E + L   ++  D    +  
Sbjct: 146 LIAQLLEQPMPDTPEQARLWI--RDKAMFELLYSSGLRVGELVGLNVADLRIDAKGERGE 203

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           +R+ GKG+K R+VP+     KAI  Y            +        G  L     Q+ +
Sbjct: 204 VRVTGKGNKTRLVPVGRQALKAINRYLPHRNLWEERGDRALFISEKHGTRLTTRAVQQRL 263

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +      G+  +   H LRH FA+H+LS  GDLR++Q +LGH  +STTQIYT+V+     
Sbjct: 264 KVAAARAGIAQNMYPHLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTHVDF---- 319

Query: 308 DWMMEIYDQTHPSITQKDK 326
           D + ++YD+ HP  +Q+ K
Sbjct: 320 DRLTQVYDKAHPRASQEKK 338


>gi|188578603|ref|YP_001915532.1| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|58425056|gb|AAW74093.1| integrase-recombinase XerD [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188523055|gb|ACD61000.1| tyrosine recombinase XerD [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 336

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 146/309 (47%), Gaps = 23/309 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L     E+G+++ TL+SY  D      + A      + I  +    Y   RA     
Sbjct: 41  ERFLDRFWAEQGVARQTLESYRRDLEGLARWRAGAGGGLLGIDRVALFDYLRWRA----- 95

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  RS  R LS +++F  +  +  + ++     +   +   SLP+AL E Q    +
Sbjct: 96  -QANYSPRSTARLLSTLRAFYGWCLRDGVRSDDPTALIDPPQLPRSLPKALTESQ----I 150

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           + +L     +T     R+ A+L L+Y  GLR+SE ++L    +   Q  LR+ GKG K R
Sbjct: 151 EALLAAPEVDTP-AGLRDRAMLELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDR 209

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNI-------QLPLFRGIRGKPLNPGVFQRYIRQLR 251
           +VPL    +  +  Y       L  N        Q+PLF     + L+   F   +++  
Sbjct: 210 LVPLGEESQHWLERYLREARPLLAANKPVAAVDGQVPLFIDAARQALSRQHFWALVKRYA 269

Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              G+ P   + H LRHSFATHLL++G DLR++Q +LGH  LSTTQIYT V  ++    +
Sbjct: 270 AVAGIDPAMVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQH----L 325

Query: 311 MEIYDQTHP 319
            +++   HP
Sbjct: 326 QKLHASHHP 334


>gi|262190134|ref|ZP_06048420.1| tyrosine recombinase XerC [Vibrio cholerae CT 5369-93]
 gi|262033988|gb|EEY52442.1| tyrosine recombinase XerC [Vibrio cholerae CT 5369-93]
          Length = 311

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 156/306 (50%), Gaps = 20/306 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  E+GLS  T ++Y+        +L      ++ +    QL    +R  + + + Q + 
Sbjct: 24  LHTEKGLSLYTQRNYKQQLETMTQYLV-----QVGLSNWSQLDAAWVRQLVMQGKRQGMK 78

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--L 142
             S+   LS ++SFL +L  R     +    +   +K  +LP+ L+       VD +  L
Sbjct: 79  ASSIATRLSSLRSFLDFLILRGELEANPAKGVSAPRKQRTLPKNLD-------VDEMAQL 131

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
           L  + +   +  R+ AI+ L+YG GLR++E +S+  +++   +  +R+ GKG+K R V  
Sbjct: 132 LEVTDDDP-LSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVWF 190

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
               ++ + ++  L    L  + +  LF    G  ++    Q+ + +  +   +    + 
Sbjct: 191 AGQAQEWVGKWLKLRS-QLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ ++    + ++YDQ HP   
Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQH----LAQVYDQAHPRAR 305

Query: 323 QKDKKN 328
           +K+K +
Sbjct: 306 KKNKDD 311


>gi|121593407|ref|YP_985303.1| tyrosine recombinase XerD [Acidovorax sp. JS42]
 gi|222110117|ref|YP_002552381.1| tyrosine recombinase xerd [Acidovorax ebreus TPSY]
 gi|120605487|gb|ABM41227.1| tyrosine recombinase XerD [Acidovorax sp. JS42]
 gi|221729561|gb|ACM32381.1| tyrosine recombinase XerD [Acidovorax ebreus TPSY]
          Length = 303

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 154/314 (49%), Gaps = 21/314 (6%)

Query: 12  FELLKERQN----WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           F +L + QN    ++  L +E GLS+ TL +Y  D    L   A +  ++     +   +
Sbjct: 3   FAMLPDSQNAIDPFIDALWLEDGLSRNTLAAYRRD----LTLYAQWLAQQNPPLALDATA 58

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLP 126
              ++ + + R  Q     S  R L+ ++ +  + L++R+I  +  +  ++  ++   +P
Sbjct: 59  EHHLQGYFAARHAQTRAT-SANRRLTVLRRYFHWALRERRIAADPTV-RLQAARQPLRVP 116

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L + Q        LLH   +   +  R+  +L L+Y  GLR+SE ++L   ++   + 
Sbjct: 117 KTLTQAQV-----EALLHAPDDATPLGLRDRTMLELMYASGLRVSELVTLKTFHLGLAEG 171

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQR 245
            LR+ GKG K R+VP      + +  Y       +    Q   LF   RG  ++  +F  
Sbjct: 172 VLRVMGKGGKERLVPFGEEAHRWLQRYLAEGRGAILGGQQTDDLFVTQRGAAMSRVMFWV 231

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +++  +  G+    + HTLRH+FATHLL++G DLR +Q +LGH  +STT IYT+V  + 
Sbjct: 232 IVKKCAQAAGITAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARER 291

Query: 306 GGDWMMEIYDQTHP 319
               +  ++ Q HP
Sbjct: 292 ----LKALHAQHHP 301


>gi|238561655|ref|ZP_00441610.2| tyrosine recombinase XerD [Burkholderia mallei GB8 horse 4]
 gi|254208847|ref|ZP_04915195.1| tyrosine recombinase XerD [Burkholderia mallei JHU]
 gi|147750723|gb|EDK57792.1| tyrosine recombinase XerD [Burkholderia mallei JHU]
 gi|238524066|gb|EEP87501.1| tyrosine recombinase XerD [Burkholderia mallei GB8 horse 4]
          Length = 329

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/277 (31%), Positives = 137/277 (49%), Gaps = 15/277 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +E GLS+ TL +Y  D + F  +LA       ++    + + TE   +I+ R   K    
Sbjct: 50  LEHGLSRNTLDAYRRDLQLFAQWLA--ARHAASVDHASEPTLTE---YIAARSDGKA--T 102

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R LS  + +  +  +         L + + K++   P  L+E Q    V+ +L    
Sbjct: 103 SSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQ----VEALLAAPD 158

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
            +T  +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+VP    V
Sbjct: 159 VDTP-LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPF-GEV 216

Query: 207 RKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
               +E Y  D  P  L       LF   RG  +    F   I++  +   + +  + HT
Sbjct: 217 AHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHT 276

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 277 LRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 313


>gi|134301812|ref|YP_001121780.1| phage integrase family protein [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049589|gb|ABO46660.1| phage integrase family protein [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 292

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 162/315 (51%), Gaps = 31/315 (9%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+   N+L NL   +  S+ T+ +Y+ D  Q          + ++ + I  L++++I  +
Sbjct: 4   LEHINNFLDNLLYLKNYSQETINNYQRDLLQL--------NQALSDKNIISLTHSDILIW 55

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I K   Q    ++L+R LS ++SF  +L   +I +++    ++  K S  LP+ +N  + 
Sbjct: 56  IKKLHAQGNSPKTLQRKLSSVRSFFNFLINSEIISQNPANGIKAPKDSKRLPKVVNTDEL 115

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D   ++ S++   I+AR+ A   LLY CG+R+SE  S+  ++I   Q  +R+ GKG
Sbjct: 116 AYLLD---INPSND---IEARDIACFDLLYSCGIRLSELSSVELKDISISQKNIRVTGKG 169

Query: 195 DKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +K RIV      L ++ + +     L P          LF    GK L     Q+ +   
Sbjct: 170 NKQRIVYFGTKTLSNLNRWLKIRDSLKPS------SDYLFISRDGKHLTNRSIQKRLEIF 223

Query: 251 -RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            ++Y    +    H LRHSFA+H+L +  DL +++ +LGH  +S+TQIYT++N +     
Sbjct: 224 AQKYASRHIH--PHMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQ---- 277

Query: 310 MMEIYDQTHPSITQK 324
           +  ++D+ HP   +K
Sbjct: 278 LASVFDKAHPRAKKK 292


>gi|58337280|ref|YP_193865.1| integrase-recombinase [Lactobacillus acidophilus NCFM]
 gi|227903866|ref|ZP_04021671.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796]
 gi|58254597|gb|AAV42834.1| integrase-recombinase [Lactobacillus acidophilus NCFM]
 gi|227868257|gb|EEJ75678.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796]
          Length = 302

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 137/283 (48%), Gaps = 13/283 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++LQN   ER  S  T+ SY+ D  +   FL    +E       + ++  +I+ ++    
Sbjct: 13  SYLQN---ERHYSSKTIASYKTDLLEVEKFL----KENGGYNGWKNITERDIQLYLQHLS 65

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +K+   S  R +S + SF ++L +RKI        +   +    LP    E +   + D
Sbjct: 66  DRKLARSSQLRQMSSLHSFYRFLTRRKIVQVDPTQQITLRRGEKKLPEFFYEPEIKQVFD 125

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           ++        K +  RN A+  L Y  G+R+SE  SLT   I     T+ + GKG K R 
Sbjct: 126 SL-----SGDKPLTVRNLALFQLFYATGMRVSEVSSLTLNQIDLTMQTILVHGKGKKDRY 180

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           V      ++++ +Y ++    L  N   P +F    GKP++    Q  +++     G+  
Sbjct: 181 VAFDDKTKRSLTKYLEIARPKLLKNEDEPHVFLSNLGKPISNRGIQYVMQKTFNQAGISG 240

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               H LRH+FAT +++NG DLRS+Q +LGH  LS TQIYT+V
Sbjct: 241 KVHPHELRHTFATAMINNGADLRSVQELLGHSSLSATQIYTHV 283


>gi|154483615|ref|ZP_02026063.1| hypothetical protein EUBVEN_01319 [Eubacterium ventriosum ATCC
           27560]
 gi|149735525|gb|EDM51411.1| hypothetical protein EUBVEN_01319 [Eubacterium ventriosum ATCC
           27560]
          Length = 295

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 147/303 (48%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + ++  L  ++  S  T  SY+ D  +F  +L   +     I+ I+ ++  ++  +I   
Sbjct: 6   EEFILQLHTKKDTSSNTEISYKRDLTKFFEYLNIGS-----IEEIKNITKHDLEGYIKHL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   ++ R+++ IK+F  YL   +I   +  + ++  K    +P  L   Q     
Sbjct: 61  SDIGRATTTISRNVASIKAFFAYLYDEEIMKSNPSVGLKAPKIIKKVPEILTVSQV---- 116

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            + LL    +    + R+ A+L LLY  G+R++E ++L   ++   Q  +    +  K R
Sbjct: 117 -DALLEQPSKNSPKELRDKAMLELLYATGMRVTELITLKMDDVNLAQEYVVCHDR-KKER 174

Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           IVP     +KA++ Y  D   + L  N   + +F   +G  ++   F + I+   +  G+
Sbjct: 175 IVPFGSDAKKALVRYITDGREYLLGDNEDSVIMFPNCQGGAMSRQGFWKLIKMYGKKAGI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               T HTLRHSFA+HL+ NG DL+S+Q +LGH  +STTQIY      +G   + E+Y +
Sbjct: 235 ETELTPHTLRHSFASHLVENGADLKSVQEMLGHSDISTTQIYMT----SGNKRVREVYAK 290

Query: 317 THP 319
            HP
Sbjct: 291 AHP 293


>gi|84622421|ref|YP_449793.1| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|161899015|ref|YP_199478.2| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84366361|dbj|BAE67519.1| integrase-recombinase XerD [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 323

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 146/309 (47%), Gaps = 23/309 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L     E+G+++ TL+SY  D      + A      + I  +    Y   RA     
Sbjct: 28  ERFLDRFWAEQGVARQTLESYRRDLEGLARWRAGAGGGLLGIDRVALFDYLRWRA----- 82

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  RS  R LS +++F  +  +  + ++     +   +   SLP+AL E Q    +
Sbjct: 83  -QANYSPRSTARLLSTLRAFYGWCLRDGVRSDDPTALIDPPQLPRSLPKALTESQ----I 137

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           + +L     +T     R+ A+L L+Y  GLR+SE ++L    +   Q  LR+ GKG K R
Sbjct: 138 EALLAAPEVDTP-AGLRDRAMLELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDR 196

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNI-------QLPLFRGIRGKPLNPGVFQRYIRQLR 251
           +VPL    +  +  Y       L  N        Q+PLF     + L+   F   +++  
Sbjct: 197 LVPLGEESQHWLERYLREARPLLAANKPVAAVDGQVPLFIDAARQALSRQHFWALVKRYA 256

Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              G+ P   + H LRHSFATHLL++G DLR++Q +LGH  LSTTQIYT V  ++    +
Sbjct: 257 AVAGIDPAMVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQH----L 312

Query: 311 MEIYDQTHP 319
            +++   HP
Sbjct: 313 QKLHASHHP 321


>gi|84686929|ref|ZP_01014813.1| tyrosine recombinase XerD [Maritimibacter alkaliphilus HTCC2654]
 gi|84665126|gb|EAQ11606.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2654]
          Length = 315

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 137/295 (46%), Gaps = 28/295 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+    E   S+ TL +Y  D + F  +L    E+              + A++     
Sbjct: 13  FLEAQAAELDASQNTLLAYGRDLKDFSGYLDRMGED------FGGADRATVEAYLIDCEA 66

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q +   +  R LS IK   ++  +    T++  L +    K+  LP+ L+E     L++ 
Sbjct: 67  QGLAVSTRARRLSAIKQIYRFAFEEGWRTDNPTLRITGPGKARRLPKTLSEDDVERLLNA 126

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
              H   +   +  RN+ ++ +LY  G+R+SE ++L       D   L + GKG K R+V
Sbjct: 127 ARQHGRTDADRL--RNACMMEVLYATGMRVSELVTLPVSAARGDPRMLLVMGKGGKERMV 184

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---LNPGV----------FQRYI 247
           PL P  R A+  + D+       +      R    KP   L P            F   I
Sbjct: 185 PLSPPARAALAAWLDV------RDAAEDAARSKGAKPSRFLFPSTGKDGHLTRHRFHGLI 238

Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + +    G+ P + T H LRH+FATHLL++G DLR+IQ++LGH  +STT+IYT+V
Sbjct: 239 KDIAVAAGVSPETVTPHRLRHAFATHLLAHGADLRAIQTLLGHADVSTTEIYTHV 293


>gi|86148174|ref|ZP_01066472.1| tyrosine recombinase [Vibrio sp. MED222]
 gi|85834021|gb|EAQ52181.1| tyrosine recombinase [Vibrio sp. MED222]
          Length = 310

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 149/302 (49%), Gaps = 16/302 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  E+GLS  T ++Y+         L       + ++   Q+    +R   SK   + + 
Sbjct: 24  LRSEKGLSLHTQRNYKQQLETMAAHLV-----TLGLKDWSQVDAAWVRQLASKGMREGMK 78

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S+   LS ++SF  +L  R   T +    +   +K   LP+ L+  +   L+D     
Sbjct: 79  ASSIATRLSSLRSFFDFLVLRGEMTANPAKGVSAPRKQRPLPKNLDVDEVGQLLD----- 133

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
             +E   +  R+ A++ ++YG GLR++E + +  ++++  Q  +R+ GKGDK R  P   
Sbjct: 134 -VNEDDPLSIRDRAMMEVMYGAGLRLAELVGINLKDVLGRQGEIRVIGKGDKERKAPF-S 191

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            + K  +E +     +L    +  LF    G  ++    Q+ + +  +   +    + H 
Sbjct: 192 GLAKEWVEKWLKVRGELASPGEPALFVSKLGTRISHRSVQKRMEEWGKKQSVASHISPHK 251

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LRHSFATH+L +  +LR++Q +LGH  +STTQ+YT+++ ++    + + YDQ HP   +K
Sbjct: 252 LRHSFATHVLESSQNLRAVQELLGHENISTTQVYTHLDFQH----LAQAYDQAHPRARKK 307

Query: 325 DK 326
           +K
Sbjct: 308 NK 309


>gi|53725157|ref|YP_102186.1| site-specific tyrosine recombinase XerD [Burkholderia mallei ATCC
           23344]
 gi|121601112|ref|YP_992015.1| site-specific tyrosine recombinase XerD [Burkholderia mallei SAVP1]
 gi|161723208|ref|YP_107488.2| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           K96243]
 gi|52428580|gb|AAU49173.1| tyrosine recombinase XerD [Burkholderia mallei ATCC 23344]
 gi|121229922|gb|ABM52440.1| tyrosine recombinase XerD [Burkholderia mallei SAVP1]
          Length = 305

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/277 (31%), Positives = 137/277 (49%), Gaps = 15/277 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +E GLS+ TL +Y  D + F  +LA       ++    + + TE   +I+ R   K    
Sbjct: 26  LEHGLSRNTLDAYRRDLQLFAQWLA--ARHAASVDHASEPTLTE---YIAARSDGKAT-- 78

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R LS  + +  +  +         L + + K++   P  L+E Q    V+ +L    
Sbjct: 79  SSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQ----VEALLAAPD 134

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
            +T  +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+VP    V
Sbjct: 135 VDTP-LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPF-GEV 192

Query: 207 RKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
               +E Y  D  P  L       LF   RG  +    F   I++  +   + +  + HT
Sbjct: 193 AHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHT 252

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 253 LRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 289


>gi|284048544|ref|YP_003398883.1| tyrosine recombinase XerD [Acidaminococcus fermentans DSM 20731]
 gi|283952765|gb|ADB47568.1| tyrosine recombinase XerD [Acidaminococcus fermentans DSM 20731]
          Length = 301

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 149/310 (48%), Gaps = 24/310 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L KE   +L+ L +E GL+  T +SY  D R F  ++          + +  +   +I A
Sbjct: 10  LEKEINLFLEYLTVELGLAYNTRESYGRDLRLFAGWIK---------KPLEDVKREDILA 60

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++   +  +    S  R L+ +K+F +++       E     +    +   LP+ ++ ++
Sbjct: 61  YMRMLKVHQYAPTSASRKLAALKAFFRFMTAEGFLEEDPSEVVEAGTRGVVLPKVMSLEE 120

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                   L      T+    R+  +L ++Y  G+R+SE LSL   ++  +   +   GK
Sbjct: 121 V-----KQLFSAPDLTQPEGFRDRTMLEVMYATGMRVSELLSLKRASVNLETRYVIAYGK 175

Query: 194 GDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           G K R++PL    +  ++K + +   L  F  N      LF  IRG  +    F + IR 
Sbjct: 176 GAKERLIPLGQYAIQYLKKYLAQVRPL--FVKNGKDDDSLFLTIRGTGMTRQRFWQIIRA 233

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                GL    T H LRHSFATH+L NG DLR++Q +LGH  +STTQIYT++ +      
Sbjct: 234 YGVKAGLQKPLTPHILRHSFATHMLDNGADLRTVQELLGHADISTTQIYTHLTNNR---- 289

Query: 310 MMEIYDQTHP 319
           + +++D+THP
Sbjct: 290 LKKVFDKTHP 299


>gi|72117696|gb|AAZ59959.1| tyrosine recombinase XerD subunit [Ralstonia eutropha JMP134]
          Length = 327

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 143/297 (48%), Gaps = 17/297 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E GLS+ T+ +Y    R+ L  LA +  +  +   +  +  TE+ A+   R  +   
Sbjct: 44  LWLEDGLSRNTMDAY----RRDLSMLARWLHQS-SNGGLLGIGDTELNAYFLARHPETRA 98

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R L+  + F ++  + ++      + +R  K+   +P+ L+E Q        LL 
Sbjct: 99  SSS-NRRLAVFRRFYQWALREQMIEADPCILLRPAKQPPRVPKTLSEAQV-----EALLE 152

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLL 203
               T  +  R+  +L L+Y  GLR+SE   +    I  ++   R+  GKGDK R+VP  
Sbjct: 153 APDTTTPLGLRDRTMLELMYASGLRVSELTQMKTVEIGLNEGVARVVGGKGDKERLVPFG 212

Query: 204 PSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
                 +  Y     P  L       LF   RG+ +    F   I++  R  G+    + 
Sbjct: 213 MQASDWLRRYLGSARPALLAGRACDALFVTQRGEGMTRQAFWHLIKRHARDAGITAPLSP 272

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     + E++ Q HP
Sbjct: 273 HTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER----LRELHQQHHP 325


>gi|320093555|ref|ZP_08025446.1| recombinase XerD [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979482|gb|EFW10953.1| recombinase XerD [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 249

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 119/237 (50%), Gaps = 12/237 (5%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S+ R+ + I+    Y  ++          +R  K+ + LP+AL+  Q   L+D    H++
Sbjct: 1   SVARASAAIRGLHAYALRQGRVGADAAAEVRAPKQGSHLPKALSVDQVSRLLDAA--HSA 58

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQS-TLRIQGKGDKIRIVPLLP 204
                +  R++A+L LLY  G R+SEA+ L   +I +DD++  +R+ GKG K R+VPL  
Sbjct: 59  PGAAGL--RDAALLELLYATGARVSEAVGLAVDDIDLDDEAPVVRLFGKGRKERLVPLGS 116

Query: 205 SVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
             + A+  Y      +L    +    +F   RG  ++       IR+     GL    + 
Sbjct: 117 YAKDALGAYLVRGRPELAARGRGSHAVFLNKRGAAMSRQSAWETIRRAASAAGLEAGVSP 176

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HTLRHSFATHLL  G  +R +Q +LGH  + TTQIYT V        + E+Y   HP
Sbjct: 177 HTLRHSFATHLLEGGASVRDVQELLGHASVQTTQIYTRVTVAA----LREVYWTAHP 229


>gi|319957731|ref|YP_004168994.1| tyrosine recombinase xerd subunit [Nitratifractor salsuginis DSM
           16511]
 gi|319420135|gb|ADV47245.1| tyrosine recombinase XerD subunit [Nitratifractor salsuginis DSM
           16511]
          Length = 276

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 91/288 (31%), Positives = 151/288 (52%), Gaps = 36/288 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + + L+I +GLS  ++ SY  D RQ         EE+     + +L    I AF+S+ 
Sbjct: 10  EAFAEYLQIVKGLSPKSIDSYLTDLRQL-------AEEQ---GDLLKLETESILAFLSRF 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +    R+L R L+ I +F+ +  + K+ T    + M  + K+  LP+ L+ ++    +
Sbjct: 60  DNK----RTLNRKLASINAFVNFCHREKLGTSRVKIPMARVPKT--LPKYLSHEE----I 109

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +  L +    T  I  R+ A++  LY  G RISEAL++   +++D    +R   KG + R
Sbjct: 110 EAGLRYIDRSTP-IGRRDYALILFLYASGCRISEALAVQRGDLVDGWLKIRY-AKGARER 167

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL P+  KA+ E+          +I  P L+   RG+PL+     + +R   +YLG+ 
Sbjct: 168 MVPLAPAALKALEEHLK------ESDIASPYLWLNYRGEPLSRVSAYKIVR---KYLGV- 217

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
              + H LRHSFAT L+  G DLR +Q +LGH  L TTQIYT++  ++
Sbjct: 218 ---SPHVLRHSFATALILGGADLRVVQELLGHSSLITTQIYTHIERQH 262


>gi|260063566|ref|YP_003196646.1| putative site-specific recombinase [Robiginitalea biformata
           HTCC2501]
 gi|88783010|gb|EAR14184.1| putative site-specific recombinase [Robiginitalea biformata
           HTCC2501]
          Length = 297

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 147/301 (48%), Gaps = 12/301 (3%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + + L +E+  +  T+++Y  D   F    + Y  E+     +    Y  IR++I   
Sbjct: 4   EAFAKYLTLEKKYAAHTVKAYLADLDAF----SEYCREEQGEFALADQPYPVIRSWIIHL 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               + +RS+ R ++ +KS+ KY  ++     S +   + LK    +PR +    + + +
Sbjct: 60  MESGLNNRSVNRKVASLKSYYKYQLRQGRIDASPLAAHKPLK----IPRRVEIPFSESEM 115

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           + +L        +   R+  ++ LLY  G+R +E + L   ++  +Q TLR+ GK DK R
Sbjct: 116 EGLLGEWEPSEGYEAHRDKLVVELLYTTGMRRAELIGLKLGDVDLEQGTLRVTGKRDKER 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           I+PLLP + + I  Y +L         +  LF   RG  L   +  R I +    +    
Sbjct: 176 ILPLLPGIVREIRAYLELRGAHFKSGSEPHLFLTSRGNKLYENLVYRIINRYLSMVSAKS 235

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FATHLL+ G D+ S++ +LGH  L++TQ+YT+    N    +  I+  +H
Sbjct: 236 KRSPHILRHTFATHLLNQGADMNSVKELLGHSSLASTQVYTH----NSIAELKRIHGTSH 291

Query: 319 P 319
           P
Sbjct: 292 P 292


>gi|126455125|ref|YP_001065195.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           1106a]
 gi|167737435|ref|ZP_02410209.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           14]
 gi|167823028|ref|ZP_02454499.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           9]
 gi|167909818|ref|ZP_02496909.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           112]
 gi|226192850|ref|ZP_03788463.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pakistan 9]
 gi|242316366|ref|ZP_04815382.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1106b]
 gi|126228767|gb|ABN92307.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1106a]
 gi|225935100|gb|EEH31074.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pakistan 9]
 gi|242139605|gb|EES26007.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1106b]
          Length = 333

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/277 (31%), Positives = 137/277 (49%), Gaps = 15/277 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +E GLS+ TL +Y  D + F  +LA       ++    + + TE   +I+ R   K    
Sbjct: 54  LEHGLSRNTLDAYRRDLQLFAQWLA--ARHAASVDHASEPTLTE---YIAARSDGKA--T 106

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R LS  + +  +  +         L + + K++   P  L+E Q    V+ +L    
Sbjct: 107 SSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQ----VEALLAAPD 162

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
            +T  +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+VP    V
Sbjct: 163 VDTP-LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPF-GEV 220

Query: 207 RKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
               +E Y  D  P  L       LF   RG  +    F   I++  +   + +  + HT
Sbjct: 221 AHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHT 280

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 281 LRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 317


>gi|124383411|ref|YP_001028462.1| site-specific tyrosine recombinase XerD [Burkholderia mallei NCTC
           10229]
 gi|254177062|ref|ZP_04883719.1| tyrosine recombinase XerD [Burkholderia mallei ATCC 10399]
 gi|254187507|ref|ZP_04894019.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pasteur 52237]
 gi|124291431|gb|ABN00700.1| tyrosine recombinase XerD [Burkholderia mallei NCTC 10229]
 gi|157935187|gb|EDO90857.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pasteur 52237]
 gi|160698103|gb|EDP88073.1| tyrosine recombinase XerD [Burkholderia mallei ATCC 10399]
          Length = 329

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 85/277 (30%), Positives = 135/277 (48%), Gaps = 15/277 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +E GLS+ TL +Y  D + F  +LA       ++    + + TE   +I+ R   K    
Sbjct: 50  LEHGLSRNTLDAYRRDLQLFAQWLA--ARHAASVDHASEPTLTE---YIAARSDGKA--T 102

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R LS  + +  +  +         L + + K++   P  L+E Q   L+    + T 
Sbjct: 103 SSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTP 162

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+VP    V
Sbjct: 163 -----LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPF-GEV 216

Query: 207 RKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
               +E Y  D  P  L       LF   RG  +    F   I++  +   + +  + HT
Sbjct: 217 AHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHT 276

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 277 LRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 313


>gi|88861277|ref|ZP_01135909.1| site-specific recombinase [Pseudoalteromonas tunicata D2]
 gi|88816758|gb|EAR26581.1| site-specific recombinase [Pseudoalteromonas tunicata D2]
          Length = 305

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 153/309 (49%), Gaps = 37/309 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +LQ L+ E+  S  TL  Y     +   FL    E  + +Q        ++RA+    + 
Sbjct: 18  FLQYLKYEKNYSIHTLLQYRLQLVEVANFLQNKAESWLKVQP------EQLRAYSMSLKA 71

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  R++   LS ++SF KYL+ RK    +    ++  K    LP+ L+  Q      +
Sbjct: 72  RALSARTINLKLSCVRSFYKYLQIRKTELNNPAEAIKGPKFQKPLPKNLDVDQM-----H 126

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL  + E  +   R+ A++ L+Y  GLR+SE ++    ++   +  +R+ GKG+K RI+
Sbjct: 127 QLLAMNPEDSF-GFRDKAMMELMYSSGLRVSELVNANLIDVNLREKEIRVLGKGNKERIL 185

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLF----------RGIRGKPLNPGVFQRYIRQL 250
           P+     +A+ ++   C  +  L  ++ +F          R +R +    G+ Q      
Sbjct: 186 PIGGKAIEALQDWLK-CRAEFALPDEVAVFVSKKKCRISTRQVRARMKLWGINQ------ 238

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+      H LRHSFA+H+L + GDLR++Q +LGH  LS TQ+YT+++ ++    +
Sbjct: 239 ----GISSQIHPHKLRHSFASHMLESSGDLRAVQELLGHSSLSATQVYTHLDFQH----L 290

Query: 311 MEIYDQTHP 319
            ++YD THP
Sbjct: 291 AKVYDNTHP 299


>gi|163787862|ref|ZP_02182309.1| integrase [Flavobacteriales bacterium ALC-1]
 gi|159877750|gb|EDP71807.1| integrase [Flavobacteriales bacterium ALC-1]
          Length = 296

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 145/295 (49%), Gaps = 12/295 (4%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E+  SK T  +Y  D   F  FL    EE    + + ++ Y+EIR +I K     I 
Sbjct: 10  LLLEKKYSKHTALAYIRDIEMFQDFL----EEHHDSEVLSKVGYSEIREWIVKLVNSGIS 65

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           +R++ R +S + ++ K+L K +    + +   + LK    +    +E++   +++N +  
Sbjct: 66  NRTVNRKISSLNTYFKFLIKTQTIKINPLKQHKALKVGKKVQLPFSEEELKAVLENSIEV 125

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
              E+    ARN  I+ L Y  G+R  E + +T  +I      L++ GK +K R +PL+ 
Sbjct: 126 HDFES----ARNHLIIELFYATGIRRIELVEITINDIDFGNKQLKVLGKRNKERYIPLID 181

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           S+  +I  Y         +N +  LF   +G  +   +  R I +           + H 
Sbjct: 182 SLIISIKNYLKYRSQLETINDKEVLFLTKKGLKIYEMLVYRIINKYFSEASTKAKCSPHV 241

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           LRHSFATHLL+ G DL +++ +LGH  L+ TQ+YT+    N    + ++Y ++HP
Sbjct: 242 LRHSFATHLLNQGADLNAVKELLGHTSLAATQVYTH----NSIAELKKVYAKSHP 292


>gi|186475291|ref|YP_001856761.1| site-specific tyrosine recombinase XerD [Burkholderia phymatum
           STM815]
 gi|184191750|gb|ACC69715.1| tyrosine recombinase XerD [Burkholderia phymatum STM815]
          Length = 315

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 134/280 (47%), Gaps = 17/280 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E GL++ TL +Y  D R F  +LA   +  +        S  ++ A+ + R   K  
Sbjct: 34  LWLEHGLARNTLDAYRRDLRLFSEWLAERRDASLDAA-----SEADLTAYSAARSADK-- 86

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R LS  + +  +  +    +    L +R+ K+    P  L E Q        LL 
Sbjct: 87  STSANRRLSVFRRYYAWAVREHRASADPTLRIRSAKQPPRFPSTLTEAQV-----EALLG 141

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
               T  +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R++P   
Sbjct: 142 APDVTTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLIPFGE 201

Query: 205 SVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ--LRRYLGLPLSTT 261
                I  Y  +  P  L       LF   R + +    F   I++  L  ++  PLS  
Sbjct: 202 EAHAWIERYLRESRPALLGQRSADALFVTARAEGMTRQQFWNIIKRHALTAHVHAPLSP- 260

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 261 -HTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHV 299


>gi|319788011|ref|YP_004147486.1| tyrosine recombinase XerD [Pseudoxanthomonas suwonensis 11-1]
 gi|317466523|gb|ADV28255.1| tyrosine recombinase XerD [Pseudoxanthomonas suwonensis 11-1]
          Length = 326

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 149/307 (48%), Gaps = 36/307 (11%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           ERGL++ +L +Y  D    L  LA + +   T   +       +  +++ R     G RS
Sbjct: 39  ERGLARASLDAYRRD----LELLARWRDG--TGGGLVGADREALFGYLAWRAGHGYGPRS 92

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ--ALTLVDNVLLHT 145
             R  + +++F  +L    +  +     +   +    LP+A++E Q  AL  V +V +  
Sbjct: 93  NARLRACLRAFYAHLVLAGVRQDDPAALIDPPRMPRPLPKAMSESQVEALLGVPDVSIPE 152

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
                    R+ A+L L+Y  GLR+SE ++L    +   Q  +R++GKG K R+VPL   
Sbjct: 153 G-------LRDRAMLELMYAAGLRVSELVNLPANAVNLRQGVVRVRGKGSKERLVPLGEE 205

Query: 206 VRKAILEYYDLC--------PFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLGL 256
            +  +  Y            P   + + ++PLF G  R  P      Q + R ++R+   
Sbjct: 206 SQDWLERYLRESRPALTGGRPVPADASGEVPLFIGASRSAPTR----QDFWRAIKRHAAA 261

Query: 257 ----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
               P + T H LRHSFATHLL++G DLR++Q +LGH  LSTTQIYT V  ++    +  
Sbjct: 262 AGIDPRTVTPHGLRHSFATHLLNHGADLRALQLLLGHASLSTTQIYTLVAREH----LQR 317

Query: 313 IYDQTHP 319
           ++ + HP
Sbjct: 318 LHARHHP 324


>gi|162210085|ref|YP_332479.2| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           1710b]
          Length = 305

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 85/277 (30%), Positives = 136/277 (49%), Gaps = 15/277 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +E GLS+ TL +Y  D + F  +LA        + ++   S   +  +I+ R   K    
Sbjct: 26  LEHGLSRNTLDAYRRDLQLFAQWLA-----ARHVASVDHASEPTLTEYIAARSDGKAT-- 78

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R LS  + +  +  +         L + + K++   P  L+E Q    V+ +L    
Sbjct: 79  SSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQ----VEALLAAPD 134

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
            +T  +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+VP    V
Sbjct: 135 VDTP-LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPF-GEV 192

Query: 207 RKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
               +E Y  D  P  L       LF   RG  +    F   I++  +   + +  + HT
Sbjct: 193 AHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHT 252

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 253 LRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 289


>gi|126438545|ref|YP_001057962.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           668]
 gi|126451016|ref|YP_001079697.1| site-specific tyrosine recombinase XerD [Burkholderia mallei NCTC
           10247]
 gi|134279602|ref|ZP_01766314.1| tyrosine recombinase XerD [Burkholderia pseudomallei 305]
 gi|166998458|ref|ZP_02264318.1| tyrosine recombinase XerD [Burkholderia mallei PRL-20]
 gi|167814554|ref|ZP_02446234.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           91]
 gi|167844587|ref|ZP_02470095.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           B7210]
 gi|167901578|ref|ZP_02488783.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           NCTC 13177]
 gi|217419758|ref|ZP_03451264.1| tyrosine recombinase XerD [Burkholderia pseudomallei 576]
 gi|254196593|ref|ZP_04903017.1| tyrosine recombinase XerD [Burkholderia pseudomallei S13]
 gi|254360098|ref|ZP_04976368.1| tyrosine recombinase XerD [Burkholderia mallei 2002721280]
 gi|52208916|emb|CAH34855.1| putative integrase/recombinase [Burkholderia pseudomallei K96243]
 gi|126218038|gb|ABN81544.1| tyrosine recombinase XerD [Burkholderia pseudomallei 668]
 gi|126243886|gb|ABO06979.1| tyrosine recombinase XerD [Burkholderia mallei NCTC 10247]
 gi|134248802|gb|EBA48884.1| tyrosine recombinase XerD [Burkholderia pseudomallei 305]
 gi|148029338|gb|EDK87243.1| tyrosine recombinase XerD [Burkholderia mallei 2002721280]
 gi|169653336|gb|EDS86029.1| tyrosine recombinase XerD [Burkholderia pseudomallei S13]
 gi|217397062|gb|EEC37078.1| tyrosine recombinase XerD [Burkholderia pseudomallei 576]
 gi|243065512|gb|EES47698.1| tyrosine recombinase XerD [Burkholderia mallei PRL-20]
          Length = 333

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/277 (31%), Positives = 137/277 (49%), Gaps = 15/277 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +E GLS+ TL +Y  D + F  +LA       ++    + + TE   +I+ R   K    
Sbjct: 54  LEHGLSRNTLDAYRRDLQLFAQWLA--ARHAASVDHASEPTLTE---YIAARSDGKA--T 106

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R LS  + +  +  +         L + + K++   P  L+E Q    V+ +L    
Sbjct: 107 SSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQ----VEALLAAPD 162

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
            +T  +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+VP    V
Sbjct: 163 VDTP-LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPF-GEV 220

Query: 207 RKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
               +E Y  D  P  L       LF   RG  +    F   I++  +   + +  + HT
Sbjct: 221 AHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHT 280

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 281 LRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 317


>gi|332828179|gb|EGK00891.1| hypothetical protein HMPREF9455_02680 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 294

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 146/295 (49%), Gaps = 13/295 (4%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  E+  S  T  SY  D  QF+ FL    +E      ++ +    IR +I      KI 
Sbjct: 11  LRYEKNFSLHTEISYSTDLHQFVGFL----QEHFPEIDVKNVDSDIIRMWIVSLMEAKIA 66

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            RS+ R LS +KSF KYL +    + + +  +   K    +P  +N       ++ VL  
Sbjct: 67  ARSVNRKLSTLKSFYKYLLRIGEVSVNPVKKITGPKTPKPIPSFVNNGD----MEKVLEE 122

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           ++ +  +   RN  ++ L Y  G+R +E + L   ++     T+++ GK +K R++P   
Sbjct: 123 SNFDNTFESLRNHIMIELFYVTGIRRAELIGLKDVDVDFSAETIQVTGKRNKQRLIPFSD 182

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            ++  + EY +    ++  N+   LF    G+ L P +  R + +  + +     T+ H 
Sbjct: 183 GMKAMLEEYLNARNEEIG-NLSGYLFVKNDGQQLYPMLVHRIVTENLKQIPTLSKTSPHV 241

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           LRHSFAT +L+NG D+ +++ +LGH  L+ T+IYT+ + +     + +IY++ HP
Sbjct: 242 LRHSFATGMLNNGADINAVKELLGHSSLAATEIYTHTSFEE----LKKIYNKAHP 292


>gi|315444421|ref|YP_004077300.1| tyrosine recombinase XerD subunit [Mycobacterium sp. Spyr1]
 gi|315262724|gb|ADT99465.1| tyrosine recombinase XerD subunit [Mycobacterium sp. Spyr1]
          Length = 320

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 149/313 (47%), Gaps = 25/313 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L +L IERG++  TL SY  D R++   L     +   +  +  ++ T++  F+   
Sbjct: 18  QGYLDHLAIERGVAANTLSSYRRDLRRYAEHL-----KARGVGDLAAVTETDVSEFLVAL 72

Query: 79  RTQKIGDR----------SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           R   +GD           S  R+L  ++   ++     I       +++    S  LP++
Sbjct: 73  R---LGDPDGGVVPLSAVSAARALIAVRGLHRFAAAEGIAAIDVARDVKPPTPSRRLPKS 129

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+  + L L++     +  ++  +  RN A+L LLY  G RISEA+ L   ++     ++
Sbjct: 130 LSIDEVLALLEAAGGDSEADSP-LTLRNRALLELLYSTGARISEAVGLDIDDVDTSARSV 188

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRY 246
            ++GKG K R++P+      A+  Y      DL    +    +F   RG  L+     + 
Sbjct: 189 LLRGKGGKQRLIPIGRPAVTALETYLVRGRPDLARRGRGTPAIFLNARGGRLSRQSAWQV 248

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           ++      G+  + + H LRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V     
Sbjct: 249 LQDAAGRAGVTATVSPHVLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTV--- 305

Query: 307 GDWMMEIYDQTHP 319
            + + E++   HP
Sbjct: 306 -NALREVWAGAHP 317


>gi|194288692|ref|YP_002004599.1| site-specific tyrosine recombinase xerd [Cupriavidus taiwanensis
           LMG 19424]
 gi|193222527|emb|CAQ68530.1| site-specific tyrosine recombinase [Cupriavidus taiwanensis LMG
           19424]
          Length = 312

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 92/297 (30%), Positives = 144/297 (48%), Gaps = 17/297 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E GLS+ T+ +Y    R+ L  LA + + +   + +       + A+ S R TQ   
Sbjct: 29  LWLEDGLSRNTIDAY----RRDLTLLARWLQHEQRGELL-DADDGALSAYFSARHTQTRA 83

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R L+  + F ++  +  +      L +R  K+    P+ L+E Q    V+ +L  
Sbjct: 84  S-SANRRLAVFRRFYQWALREHLVQVDPCLLLRPAKQPPRHPKTLSEAQ----VEALLEA 138

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLL 203
              ET  +  R+  +L L+Y  GLR+SE   +    I  ++   R+  GKGDK R+VP  
Sbjct: 139 PDTETP-LGLRDRTMLELMYASGLRVSELTQMKTVEIGLNEGVARVVGGKGDKERLVPFG 197

Query: 204 PSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
                 +  Y     P  L       LF   RG+ +    F   I++  R  G+    + 
Sbjct: 198 QQAGDWLRRYLASARPVLLAGRACDALFVTQRGEGMTRQAFWHLIKRHARDAGVHAPLSP 257

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     + E++ Q HP
Sbjct: 258 HTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER----LRELHQQHHP 310


>gi|330827985|ref|YP_004390937.1| Tyrosine recombinase XerC [Aeromonas veronii B565]
 gi|328803121|gb|AEB48320.1| Tyrosine recombinase XerC [Aeromonas veronii B565]
          Length = 325

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 156/318 (49%), Gaps = 27/318 (8%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR- 64
           LP  ++ EL      +++ L +ER LS  T  +Y+         L   T E + +     
Sbjct: 19  LPAALADELAA----FIEYLRVERQLSPHTRNNYQA-------HLEAMTAELVALGLTDW 67

Query: 65  -QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
            +L  +++R  +++     +  RSL   +S ++SF  +  ++   T +    +   K+  
Sbjct: 68  GRLEASQVRTLVTRMHKAGLAPRSLSTKVSALRSFCDWQVRQGRLTANPARGIVTPKQGR 127

Query: 124 SLPRALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
            LP+ L+       VD +  LL+ + E   +  R+ AI+ L+Y  GLR++E + +   ++
Sbjct: 128 PLPKNLD-------VDEMHQLLNITDEQDPLAVRDRAIMELMYSSGLRLAELVGINLVDL 180

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
             D   L++ GKG + R++P+     + + ++  + P  L  +    LF   R + L+  
Sbjct: 181 KLDDRQLKVTGKGSRERVLPIGRMAVEWLQKWLKVRPL-LAGDESEALFVSSRKQRLSAR 239

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             Q  +        L      H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT++
Sbjct: 240 SVQARLDGWGNKQALNAHVHPHKLRHSFATHMLESSGDLRAVQELLGHADLSTTQIYTHL 299

Query: 302 NSKNGGDWMMEIYDQTHP 319
           + ++    + ++YD  HP
Sbjct: 300 DFQH----LAKVYDSAHP 313


>gi|296113698|ref|YP_003627636.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis RH4]
 gi|295921392|gb|ADG61743.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis RH4]
 gi|326562438|gb|EGE12757.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 7169]
 gi|326569146|gb|EGE19208.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis BC1]
          Length = 330

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 144/305 (47%), Gaps = 18/305 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +W   L ++   SK T+ +Y+    QF  FL             R+   T  R F ++  
Sbjct: 29  SWCDELRLQ-NYSKHTITTYQTALIQFFNFLESDNYLGGDPLACRRQDLT--RFFSTRLE 85

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +KI   S K SLS I+ F ++L K+ +   +     +       LP   +E     L+D
Sbjct: 86  EEKIKPISAKLSLSAIRIFYQFLIKQGVIAVNPTTGYKIKSAPRKLPTVADELLIKQLLD 145

Query: 140 NVLLH-TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                 T+    WI  R+ A+  L+Y  GLR+SE   L   ++  D   +R+ GKG+K R
Sbjct: 146 QKTPEDTAKACLWI--RDKAMFELMYSSGLRLSELAGLNMGDVNFDIGIVRVLGKGNKTR 203

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            VP+    +KA++   D  P   NL    N +        G  L+    Q  ++      
Sbjct: 204 QVPV---GKKAMIALQDYLPHR-NLWQKKNCKALFISERHGTRLSTRAIQLRLKVCATMA 259

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+ L+   H LRH FA+H+LS+ GDLR+IQ +LGH  +STTQIYT+V+       + ++Y
Sbjct: 260 GIELNMYPHLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHVDFGT----LTKVY 315

Query: 315 DQTHP 319
           D  HP
Sbjct: 316 DHAHP 320


>gi|330826574|ref|YP_004389877.1| Tyrosine recombinase xerC [Alicycliphilus denitrificans K601]
 gi|329311946|gb|AEB86361.1| Tyrosine recombinase xerC [Alicycliphilus denitrificans K601]
          Length = 299

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 149/312 (47%), Gaps = 21/312 (6%)

Query: 14  LLKERQN----WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +L E QN    +L  L +E GLS+ TL +Y  D   +  +LA          T       
Sbjct: 1   MLPESQNAIDSFLDALWLEDGLSRNTLAAYRRDLSLYAGWLAAQQPPLALDATAEH---- 56

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRA 128
            +  + + R  Q     S  R L+ ++ +  + L++R+I  +  +  +   ++   +P+ 
Sbjct: 57  HLSGYFAARHAQTRAT-SANRRLTVLRRYFHWALRERRIAQDPTV-RLLAARQPLRVPKT 114

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L + Q        LLH       +  R+  +L L+Y  GLR+SE ++L    +   +  L
Sbjct: 115 LTQAQV-----EALLHAPDTATALGLRDRTMLELMYASGLRVSELVTLKTFQLGLAEGVL 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYI 247
           RI GKG K R+VP     R+ +  Y       +    Q   LF   RG  ++  +F   +
Sbjct: 170 RITGKGGKERLVPFGEEARRWLERYLAEGRGAILAGRQTDDLFVTQRGSAMSRVMFWVIV 229

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++  +  G+    + HTLRH+FATHLL++G DLR +Q +LGH  +STT IYT+V  +   
Sbjct: 230 KKCAQLAGITAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARER-- 287

Query: 308 DWMMEIYDQTHP 319
             + +++ Q HP
Sbjct: 288 --LKQLHAQHHP 297


>gi|254448959|ref|ZP_05062414.1| tyrosine recombinase XerC [gamma proteobacterium HTCC5015]
 gi|198261496|gb|EDY85786.1| tyrosine recombinase XerC [gamma proteobacterium HTCC5015]
          Length = 301

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 144/309 (46%), Gaps = 15/309 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +LQ+L  ER  S  TL +Y  D +    ++       + I   +Q+   ++R F +  
Sbjct: 2   QRYLQHLMAERRYSSHTLDNYRRDLKALCDYIG-----PLPI-DWQQVIGQDVRDFAAAS 55

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +  RS+ R LS  + F ++L +      +    +   +    LP  L+  +   L+
Sbjct: 56  HRGGLASRSIARRLSAARGFFQFLIREGQLQANPAQGVPAPRGEKKLPEVLDADRLQHLL 115

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D        +    D R  AIL L Y  GLR++E  +L   ++   +  L + GKG K R
Sbjct: 116 DAP--SQRDDANSADVRERAILELFYSTGLRLAELAALDCADLRHQERDLEVVGKGSKAR 173

Query: 199 IVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            V +    R+++ ++  +    L       +  LF   RG  L+    Q+ I    +  G
Sbjct: 174 HVMVGGKARESLDDWLAVRSQWLEGSGAKREDALFINQRGGRLSVRGIQQRIADYAQRRG 233

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L  +   H LRHSFATHLL + GDLR++Q +LGH  + TTQIYT+++ ++    +   YD
Sbjct: 234 LDRNLHPHMLRHSFATHLLESSGDLRAVQKLLGHANIGTTQIYTHLDFQH----LANTYD 289

Query: 316 QTHPSITQK 324
           + HP   +K
Sbjct: 290 KAHPRAKRK 298


>gi|254258575|ref|ZP_04949629.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1710a]
 gi|254217264|gb|EET06648.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1710a]
          Length = 333

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 85/277 (30%), Positives = 136/277 (49%), Gaps = 15/277 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +E GLS+ TL +Y  D + F  +LA        + ++   S   +  +I+ R   K    
Sbjct: 54  LEHGLSRNTLDAYRRDLQLFAQWLAARH-----VASVDHASEPTLTEYIAARSDGKA--T 106

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R LS  + +  +  +         L + + K++   P  L+E Q    V+ +L    
Sbjct: 107 SSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQ----VEALLAAPD 162

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
            +T  +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+VP    V
Sbjct: 163 VDTP-LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPF-GEV 220

Query: 207 RKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
               +E Y  D  P  L       LF   RG  +    F   I++  +   + +  + HT
Sbjct: 221 AHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHT 280

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 281 LRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 317


>gi|326571339|gb|EGE21356.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis BC8]
          Length = 331

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 97/309 (31%), Positives = 146/309 (47%), Gaps = 26/309 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +W   L ++   SK T+ +Y+    QF  FL             R+   T  R F ++  
Sbjct: 29  SWCDELRLQ-NYSKHTITTYQTALIQFFNFLESDNYLGGDPLACRRQDLT--RFFSTRLE 85

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +KI   S K SLS I+ F ++L K+ +      +N     K  S PR L       L+ 
Sbjct: 86  EEKIKPISAKLSLSAIRIFYQFLIKQGVIA----VNPTTGYKIKSAPRKLPTVADELLIK 141

Query: 140 NVLLHTSHETK-----WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
            +L   + E       WI  R+ A+  L+Y  GLR+SE   L   ++  D   +R+ GKG
Sbjct: 142 QLLDQKTPEDTAKAYLWI--RDKAMFELMYSSGLRLSELAGLNMGDVNFDTGIVRVLGKG 199

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +K R VP+    +KA++   D  P   NL    N +        G  L+    Q  ++  
Sbjct: 200 NKTRQVPV---GKKAMIALQDYLPHR-NLWQKKNCKALFISERHGTRLSTRAIQLRLKVC 255

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+ L+   H LRH FA+H+LS+ GDLR+IQ +LGH  +STTQIYT+V+       +
Sbjct: 256 ATMAGIELNMYPHLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHVDFGA----L 311

Query: 311 MEIYDQTHP 319
            ++YD  HP
Sbjct: 312 TKVYDHAHP 320


>gi|319761793|ref|YP_004125730.1| tyrosine recombinase xerd [Alicycliphilus denitrificans BC]
 gi|317116354|gb|ADU98842.1| tyrosine recombinase XerD [Alicycliphilus denitrificans BC]
          Length = 299

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 149/312 (47%), Gaps = 21/312 (6%)

Query: 14  LLKERQN----WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +L E QN    +L  L +E GLS+ TL +Y  D   +  +LA          T       
Sbjct: 1   MLPESQNAIDSFLDALWLEDGLSRNTLAAYRRDLSLYAGWLAAQQPPLALDATAEH---- 56

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRA 128
            +  + + R  Q     S  R L+ ++ +  + L++R+I  +  +  +   ++   +P+ 
Sbjct: 57  HLSGYFAARHAQTRAT-SANRRLTVLRRYFHWALRERRIAQDPTV-RLLAARQPLRVPKT 114

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L + Q        LLH       +  R+  +L L+Y  GLR+SE ++L    +   +  L
Sbjct: 115 LTQAQV-----EALLHAPDTATALGLRDRTMLELMYASGLRVSELVTLKTFQLGLTEGVL 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYI 247
           RI GKG K R+VP     R+ +  Y       +    Q   LF   RG  ++  +F   +
Sbjct: 170 RITGKGGKERLVPFGEEARRWLERYLAEGRGAILAGRQTDDLFVTQRGSAMSRVMFWVIV 229

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++  +  G+    + HTLRH+FATHLL++G DLR +Q +LGH  +STT IYT+V  +   
Sbjct: 230 KKCAQLAGITAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARER-- 287

Query: 308 DWMMEIYDQTHP 319
             + +++ Q HP
Sbjct: 288 --LKQLHAQHHP 297


>gi|145224084|ref|YP_001134762.1| site-specific tyrosine recombinase XerD [Mycobacterium gilvum
           PYR-GCK]
 gi|145216570|gb|ABP45974.1| tyrosine recombinase XerD [Mycobacterium gilvum PYR-GCK]
          Length = 314

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 149/313 (47%), Gaps = 25/313 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L +L IERG++  TL SY  D R++   L     +   +  +  ++ T++  F+   
Sbjct: 12  QGYLDHLAIERGVAANTLSSYRRDLRRYAEHL-----KARGVGDLAAVTETDVSEFLVAL 66

Query: 79  RTQKIGDR----------SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           R   +GD           S  R+L  ++   ++     I       +++    S  LP++
Sbjct: 67  R---LGDPDGGVVPLSAVSAARALIAVRGLHRFAAAEGIAAIDVARDVKPPTPSRRLPKS 123

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+  + L L++     +  ++  +  RN A+L LLY  G RISEA+ L   ++     ++
Sbjct: 124 LSIDEVLALLEAAGGDSEADSP-LTLRNRALLELLYSTGARISEAVGLDIDDVDTSARSV 182

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRY 246
            ++GKG K R++P+      A+  Y      DL    +    +F   RG  L+     + 
Sbjct: 183 LLRGKGGKQRLIPIGRPAVTALETYLVRGRPDLARRGRGTPAIFLNARGGRLSRQSAWQV 242

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           ++      G+  + + H LRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V     
Sbjct: 243 LQDAAGRAGVTATVSPHVLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTV--- 299

Query: 307 GDWMMEIYDQTHP 319
            + + E++   HP
Sbjct: 300 -NALREVWAGAHP 311


>gi|326570632|gb|EGE20668.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis BC7]
 gi|326574796|gb|EGE24730.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis O35E]
          Length = 330

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 97/309 (31%), Positives = 146/309 (47%), Gaps = 26/309 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +W   L ++   SK T+ +Y+    QF  FL             R+   T  R F ++  
Sbjct: 29  SWCDELRLQ-NYSKHTITTYQTALIQFFNFLESDNYLGGDPLACRRQDLT--RFFSTRLE 85

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +KI   S K SLS I+ F ++L K+ +      +N     K  S PR L       L+ 
Sbjct: 86  EEKIKPISAKLSLSAIRIFYQFLIKQGVIA----VNPTTGYKIKSAPRKLPTVADELLIK 141

Query: 140 NVLLHTSHETK-----WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
            +L   + E       WI  R+ A+  L+Y  GLR+SE   L   ++  D   +R+ GKG
Sbjct: 142 QLLDQKTPEDTAKAYLWI--RDKAMFELMYSSGLRLSELAGLNMGDVNFDTGIVRVLGKG 199

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +K R VP+    +KA++   D  P   NL    N +        G  L+    Q  ++  
Sbjct: 200 NKTRQVPV---GKKAMIALQDYLPHR-NLWQKKNCKALFISERHGTRLSTRAIQLRLKVC 255

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+ L+   H LRH FA+H+LS+ GDLR+IQ +LGH  +STTQIYT+V+       +
Sbjct: 256 ATMAGIELNMYPHLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHVDFGA----L 311

Query: 311 MEIYDQTHP 319
            ++YD  HP
Sbjct: 312 TKVYDHAHP 320


>gi|269213747|ref|ZP_05982773.2| tyrosine recombinase XerC [Neisseria cinerea ATCC 14685]
 gi|269145670|gb|EEZ72088.1| tyrosine recombinase XerC [Neisseria cinerea ATCC 14685]
          Length = 329

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 125/244 (51%), Gaps = 11/244 (4%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +G+R+L R LS  + +  +L KR +       +++  K+   +P+AL ++     ++ +L
Sbjct: 97  LGERTLARKLSSWRQYCVWLVKRGLMHADPTADIKPPKQPERIPKALPQE----CLNQML 152

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
                +   +  R+ A+  L+YG GLR+SE   L   ++  D+  +R+ GKG K R VPL
Sbjct: 153 DLPVDDGDALALRDHALFELMYGSGLRLSEIHGLDTGDVWLDEGWVRVTGKGRKQRQVPL 212

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
                +A+  Y    P     +    LF G  G  L+    Q+ +       G     + 
Sbjct: 213 TGKSVEALKNYL---PLRQTASDGKALFTGRNGTRLSQRQIQKRLESWAAQNGDGRHISP 269

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           H +RHS+A+HLL +  D+R++Q +LGH  LSTTQIYT ++     D +  +YD+ HP   
Sbjct: 270 HMMRHSYASHLLQSSRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAHPRAK 325

Query: 323 QKDK 326
           +++K
Sbjct: 326 RQEK 329


>gi|163747117|ref|ZP_02154473.1| tyrosine recombinase XerD [Oceanibulbus indolifex HEL-45]
 gi|161379678|gb|EDQ04091.1| tyrosine recombinase XerD [Oceanibulbus indolifex HEL-45]
          Length = 327

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 137/284 (48%), Gaps = 18/284 (6%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97
           +Y  D + F  FLA    + +T       S  E+  ++     Q +   +  R LS IK 
Sbjct: 32  AYGRDLKDFDAFLARQNHDFLTA------SRGEVEDYLVYCDAQGLAKSTRARRLSAIKQ 85

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
             ++  +  +  ++  + +    +   LP+ L+E++   L+D      S        RN+
Sbjct: 86  LYRFAFEEGLREDNPAVQIAGPGQDRRLPKILSEEEVDRLLDAA--RNSGRALADQLRNT 143

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY--- 214
            ++ LLY  G+R+SE +SL       D   L I GKG + R+VPL    R A+  +    
Sbjct: 144 CLMELLYATGMRVSELVSLPVSAARGDPRLLLISGKGGRERLVPLSEPARDALAAWLVVR 203

Query: 215 DLCPFDLNLNIQLP---LF--RGIRGKPLNPGVFQRYIRQLRRYLGLPLS-TTAHTLRHS 268
           D          + P   LF  RG+ G  L    F   I++     G+P    T HTLRH+
Sbjct: 204 DKADEAAQAKGKPPARHLFPSRGVMGH-LTRHRFYLLIKEFAVTGGVPPEKVTPHTLRHA 262

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           FATHLL+NG DLR+IQ++LGH  ++TT+IYT+V  +   D ++E
Sbjct: 263 FATHLLANGADLRAIQTMLGHADVATTEIYTHVLEERLSDLVLE 306


>gi|51594547|ref|YP_068738.1| site-specific tyrosine recombinase XerC [Yersinia
           pseudotuberculosis IP 32953]
 gi|186893547|ref|YP_001870659.1| site-specific tyrosine recombinase XerC [Yersinia
           pseudotuberculosis PB1/+]
 gi|51587829|emb|CAH19432.1| putative integrase/recombinase [Yersinia pseudotuberculosis IP
           32953]
 gi|186696573|gb|ACC87202.1| tyrosine recombinase XerC [Yersinia pseudotuberculosis PB1/+]
          Length = 303

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 151/309 (48%), Gaps = 17/309 (5%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           S  L  + + +L+ L IER LS LT+ SY    RQ    +     E++ +   + L   +
Sbjct: 5   SASLAPQVEAFLRYLSIERQLSPLTVTSYR---RQLSALMEI--GEQMGLAHWQTLDAAQ 59

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +R+ +S+ +   +   SL   LS ++SFL +L  + +   +    +   +    LP+ ++
Sbjct: 60  VRSLVSRSKRTGLHASSLALRLSALRSFLNWLVSQGVLPANPAKGVSTPRSGRHLPKNID 119

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             +   L+   L         +  R+ A+L ++YG GLR+SE + +  +++      + +
Sbjct: 120 VDEINKLLSIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGMNCKHVDLASGDVWV 173

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG K R VPL  +    +  +  L   +L       +F    GK ++    Q+   + 
Sbjct: 174 MGKGSKERKVPLGKTAVTWLQHWLALR--ELFEPQDDAIFLANTGKRISARNVQKRFAEW 231

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+      H LRHSFATH+L + GDLR++Q +LGH  L+TTQIYT+++ ++    +
Sbjct: 232 GVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----L 287

Query: 311 MEIYDQTHP 319
             +YD  HP
Sbjct: 288 ATVYDAAHP 296


>gi|255020750|ref|ZP_05292809.1| Site-specific recombinase XerD [Acidithiobacillus caldus ATCC
           51756]
 gi|254969812|gb|EET27315.1| Site-specific recombinase XerD [Acidithiobacillus caldus ATCC
           51756]
          Length = 308

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 150/300 (50%), Gaps = 16/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L +E  L+  +L++Y  D R    +LA       + + +R     ++  F+++R  
Sbjct: 22  FLDHLWLEGNLAANSLEAYSRDLRLLATYLA------ASQRRLRDADAADLSLFLAQRLQ 75

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                RS+ R LS ++ F  + ++     +    ++++L     LP   +E +    VD 
Sbjct: 76  GGAALRSVARQLSSLRRFYAFAQREGWRGDDPSASLQHLHIGRHLPAVPSEGE----VDA 131

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +L      T  +  R++A+L  LY  GLR+SE + L    +  +   +   GKG K R++
Sbjct: 132 LLAAPDRRTV-LGLRDAAMLETLYATGLRVSELVGLLCSQLDLEAGVVLTLGKGSKERLI 190

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+     + +  Y       L  + Q P LF  +RG+ ++   F + I+      G+  +
Sbjct: 191 PVGEVALETLHRYLREARGALLGHKQSPALFLTVRGEAMSRQRFWQTIKAHATKAGIRSA 250

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + H+LRH+FATHLL +G DLRS+Q +LGH +L+TT+IYT++        +  ++ Q HP
Sbjct: 251 FSPHSLRHAFATHLLDHGADLRSVQLMLGHAQLNTTEIYTHIAQAR----LQNLHRQHHP 306


>gi|254203866|ref|ZP_04910226.1| tyrosine recombinase XerD [Burkholderia mallei FMH]
 gi|147745378|gb|EDK52458.1| tyrosine recombinase XerD [Burkholderia mallei FMH]
          Length = 333

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 86/277 (31%), Positives = 137/277 (49%), Gaps = 15/277 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +E GLS+ TL +Y  D + F  +LA       ++    + + TE   +I+ R   K    
Sbjct: 54  LEHGLSRNTLDAYRRDLQLFAQWLA--ARHAASVDHASEPTLTE---YIAARSDGKA--T 106

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R LS  + +  +  +         L + + K++   P  L+E Q    V+ +L    
Sbjct: 107 SSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQ----VEALLAAPD 162

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
            +T  +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+VP    V
Sbjct: 163 VDTP-LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPF-GEV 220

Query: 207 RKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
               +E Y  D  P  L       LF   RG  +    F   I++  +   + +  + HT
Sbjct: 221 AHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHT 280

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 281 LRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 317


>gi|294142606|ref|YP_003558584.1| integrase/recombinase XerC [Shewanella violacea DSS12]
 gi|293329075|dbj|BAJ03806.1| integrase/recombinase XerC [Shewanella violacea DSS12]
          Length = 308

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 151/316 (47%), Gaps = 25/316 (7%)

Query: 20  NWLQNLEI----ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           NW +  E     ER LS  T+++Y  +  +    L       I+   I   S+ +I+  +
Sbjct: 4   NWFKQFESHLSSERQLSAHTVRNYLYELHRVTDKLDASASFPISWSEI---SHEQIQHVL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            +   Q +  RSL  +LS +K F  +L    +   +   N+   K++  LP+ ++    L
Sbjct: 61  GQLHRQGLSPRSLSLTLSAVKQFCDFLLGEGVINANPAKNLSAPKQNKPLPKNMD----L 116

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
             V ++L   + +   +  R+ AI+ L Y  GLR++E  +L   +I      +++ GKG 
Sbjct: 117 DSVTHLLEIDADDP--LSVRDKAIMELFYSSGLRLAELAALDVLDIRFADRQVKVLGKGS 174

Query: 196 KIRIVPLLPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K RIVP+      AI   L + +  P          LF   +G  L     Q  + +  +
Sbjct: 175 KERIVPVGRCAIDAIQAWLTFREAIPCQ-----DEALFVTAKGNRLAHRSIQARLAKWGQ 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L +    H LRHSFATH+L +  DLR++Q +LGH  LSTTQIYT+++ ++    + +
Sbjct: 230 EQALNMRVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQIYTSLDFQH----LAK 285

Query: 313 IYDQTHPSITQKDKKN 328
           +YD  HP  ++  K N
Sbjct: 286 VYDGAHPRASRSKKLN 301


>gi|15608839|ref|NP_216217.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           H37Rv]
 gi|15841158|ref|NP_336195.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           CDC1551]
 gi|31792887|ref|NP_855380.1| site-specific tyrosine recombinase XerD [Mycobacterium bovis
           AF2122/97]
 gi|121637608|ref|YP_977831.1| site-specific tyrosine recombinase XerD [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148661498|ref|YP_001283021.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           H37Ra]
 gi|148822907|ref|YP_001287661.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           F11]
 gi|167969182|ref|ZP_02551459.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           H37Ra]
 gi|215403996|ref|ZP_03416177.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           02_1987]
 gi|215411348|ref|ZP_03420156.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           94_M4241A]
 gi|215427023|ref|ZP_03424942.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           T92]
 gi|215430593|ref|ZP_03428512.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           EAS054]
 gi|215445888|ref|ZP_03432640.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           T85]
 gi|218753409|ref|ZP_03532205.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           GM 1503]
 gi|219557623|ref|ZP_03536699.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           T17]
 gi|224990083|ref|YP_002644770.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253799261|ref|YP_003032262.1| integrase [Mycobacterium tuberculosis KZN 1435]
 gi|254231896|ref|ZP_04925223.1| hypothetical protein TBCG_01654 [Mycobacterium tuberculosis C]
 gi|254364540|ref|ZP_04980586.1| hypothetical integrase/recombinase [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254550710|ref|ZP_05141157.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260200764|ref|ZP_05768255.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           T46]
 gi|260204970|ref|ZP_05772461.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           K85]
 gi|289443158|ref|ZP_06432902.1| tyrosine recombinase XerD [Mycobacterium tuberculosis T46]
 gi|289554527|ref|ZP_06443737.1| integrase [Mycobacterium tuberculosis KZN 605]
 gi|289569749|ref|ZP_06449976.1| integrase [Mycobacterium tuberculosis T17]
 gi|289574368|ref|ZP_06454595.1| integrase [Mycobacterium tuberculosis K85]
 gi|289745862|ref|ZP_06505240.1| tyrosine recombinase xerD [Mycobacterium tuberculosis 02_1987]
 gi|289750256|ref|ZP_06509634.1| integrase [Mycobacterium tuberculosis T92]
 gi|289753791|ref|ZP_06513169.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           EAS054]
 gi|289757810|ref|ZP_06517188.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           T85]
 gi|289761856|ref|ZP_06521234.1| tyrosine recombinase xerD [Mycobacterium tuberculosis GM 1503]
 gi|294993190|ref|ZP_06798881.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           210]
 gi|297634253|ref|ZP_06952033.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           KZN 4207]
 gi|297731240|ref|ZP_06960358.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           KZN R506]
 gi|298525199|ref|ZP_07012608.1| integrase/recombinase XerD [Mycobacterium tuberculosis 94_M4241A]
 gi|306775886|ref|ZP_07414223.1| integrase [Mycobacterium tuberculosis SUMu001]
 gi|306779704|ref|ZP_07418041.1| integrase [Mycobacterium tuberculosis SUMu002]
 gi|306784437|ref|ZP_07422759.1| integrase [Mycobacterium tuberculosis SUMu003]
 gi|306788804|ref|ZP_07427126.1| integrase [Mycobacterium tuberculosis SUMu004]
 gi|306793139|ref|ZP_07431441.1| integrase [Mycobacterium tuberculosis SUMu005]
 gi|306797519|ref|ZP_07435821.1| integrase [Mycobacterium tuberculosis SUMu006]
 gi|306803400|ref|ZP_07440068.1| integrase [Mycobacterium tuberculosis SUMu008]
 gi|306807982|ref|ZP_07444650.1| integrase [Mycobacterium tuberculosis SUMu007]
 gi|306967799|ref|ZP_07480460.1| integrase [Mycobacterium tuberculosis SUMu009]
 gi|306971995|ref|ZP_07484656.1| integrase [Mycobacterium tuberculosis SUMu010]
 gi|307079707|ref|ZP_07488877.1| integrase [Mycobacterium tuberculosis SUMu011]
 gi|307084286|ref|ZP_07493399.1| integrase [Mycobacterium tuberculosis SUMu012]
 gi|313658572|ref|ZP_07815452.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           KZN V2475]
 gi|54039885|sp|P67637|XERD_MYCBO RecName: Full=Tyrosine recombinase xerD
 gi|54042782|sp|P67636|XERD_MYCTU RecName: Full=Tyrosine recombinase xerD
 gi|2326744|emb|CAB10958.1| PROBABLE INTEGRASE/RECOMBINASE [Mycobacterium tuberculosis H37Rv]
 gi|13881378|gb|AAK46009.1| integrase/recombinase XerD [Mycobacterium tuberculosis CDC1551]
 gi|31618477|emb|CAD96395.1| PROBABLE INTEGRASE/RECOMBINASE [Mycobacterium bovis AF2122/97]
 gi|121493255|emb|CAL71726.1| Probable integrase/recombinase [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124600955|gb|EAY59965.1| hypothetical protein TBCG_01654 [Mycobacterium tuberculosis C]
 gi|134150054|gb|EBA42099.1| hypothetical integrase/recombinase [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148505650|gb|ABQ73459.1| tyrosine recombinase [Mycobacterium tuberculosis H37Ra]
 gi|148721434|gb|ABR06059.1| hypothetical integrase/recombinase [Mycobacterium tuberculosis F11]
 gi|224773196|dbj|BAH26002.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253320764|gb|ACT25367.1| integrase [Mycobacterium tuberculosis KZN 1435]
 gi|289416077|gb|EFD13317.1| tyrosine recombinase XerD [Mycobacterium tuberculosis T46]
 gi|289439159|gb|EFD21652.1| integrase [Mycobacterium tuberculosis KZN 605]
 gi|289538799|gb|EFD43377.1| integrase [Mycobacterium tuberculosis K85]
 gi|289543503|gb|EFD47151.1| integrase [Mycobacterium tuberculosis T17]
 gi|289686390|gb|EFD53878.1| tyrosine recombinase xerD [Mycobacterium tuberculosis 02_1987]
 gi|289690843|gb|EFD58272.1| integrase [Mycobacterium tuberculosis T92]
 gi|289694378|gb|EFD61807.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           EAS054]
 gi|289709362|gb|EFD73378.1| tyrosine recombinase xerD [Mycobacterium tuberculosis GM 1503]
 gi|289713374|gb|EFD77386.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           T85]
 gi|298494993|gb|EFI30287.1| integrase/recombinase XerD [Mycobacterium tuberculosis 94_M4241A]
 gi|308215637|gb|EFO75036.1| integrase [Mycobacterium tuberculosis SUMu001]
 gi|308327355|gb|EFP16206.1| integrase [Mycobacterium tuberculosis SUMu002]
 gi|308330798|gb|EFP19649.1| integrase [Mycobacterium tuberculosis SUMu003]
 gi|308334621|gb|EFP23472.1| integrase [Mycobacterium tuberculosis SUMu004]
 gi|308338408|gb|EFP27259.1| integrase [Mycobacterium tuberculosis SUMu005]
 gi|308342131|gb|EFP30982.1| integrase [Mycobacterium tuberculosis SUMu006]
 gi|308345601|gb|EFP34452.1| integrase [Mycobacterium tuberculosis SUMu007]
 gi|308349918|gb|EFP38769.1| integrase [Mycobacterium tuberculosis SUMu008]
 gi|308354539|gb|EFP43390.1| integrase [Mycobacterium tuberculosis SUMu009]
 gi|308358516|gb|EFP47367.1| integrase [Mycobacterium tuberculosis SUMu010]
 gi|308362455|gb|EFP51306.1| integrase [Mycobacterium tuberculosis SUMu011]
 gi|308366075|gb|EFP54926.1| integrase [Mycobacterium tuberculosis SUMu012]
 gi|323719791|gb|EGB28905.1| integrase [Mycobacterium tuberculosis CDC1551A]
 gi|326903315|gb|EGE50248.1| integrase [Mycobacterium tuberculosis W-148]
 gi|328459013|gb|AEB04436.1| integrase [Mycobacterium tuberculosis KZN 4207]
          Length = 311

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 145/310 (46%), Gaps = 19/310 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF-ISK 77
           Q +L +L IERG++  TL SY  D R++   L     E+  I  + ++   ++  F ++ 
Sbjct: 9   QGYLDHLTIERGVAANTLSSYRRDLRRYSKHL-----EERGITDLAKVGEHDVSEFLVAL 63

Query: 78  RR------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           RR      T  +   S  R+L  ++   ++     +        +R    S  LP++L  
Sbjct: 64  RRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTI 123

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            + L+L++        +   +  RN A+L LLY  G RISEA+ L   +I     ++ ++
Sbjct: 124 DEVLSLLEGAGGDKPSDGP-LTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLR 182

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQ 249
           GKG K R+VP+      A+  Y      DL    +    +F   RG  L+     + ++ 
Sbjct: 183 GKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQD 242

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+    + H LRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V        
Sbjct: 243 AAERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHA---- 298

Query: 310 MMEIYDQTHP 319
           + E++   HP
Sbjct: 299 LREVWAGAHP 308


>gi|315282101|ref|ZP_07870587.1| tyrosine recombinase XerC [Listeria marthii FSL S4-120]
 gi|313614253|gb|EFR87911.1| tyrosine recombinase XerC [Listeria marthii FSL S4-120]
          Length = 300

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 145/309 (46%), Gaps = 21/309 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q +L  L  ER  S  T  +YE D   F  FL      +  I   +Q+++ ++R ++
Sbjct: 6   KLEQQFLDYLHSERNYSVNTSTAYENDLLDFRRFL-----NEQAIMAYQQVTFLDVRIYL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++ + +     ++ R +S ++SF  +L +  + TE+    + + K    LP+    ++  
Sbjct: 61  TELKQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEME 120

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L   V      + + +  R+  +L +LYG G+R+SE   +   ++      + I+GKG+
Sbjct: 121 ALFQVVY----EDNETLTLRDRVLLEVLYGTGIRVSECAGILMPDLDTSYQAILIRGKGN 176

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVFQRYIRQL 250
           K R VP       AI +Y    P    L  +       L     G PL     +  + ++
Sbjct: 177 KERYVPFGVYAEDAITDY---LPSRTELMTRYKKSHDALLVNHYGDPLTTRGIRYCLTKI 233

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                L      H LRH+FAT LL+NG D+R++Q +LGH  LS+TQIYT+V  ++    +
Sbjct: 234 ISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----L 289

Query: 311 MEIYDQTHP 319
              Y + HP
Sbjct: 290 KSTYMKHHP 298


>gi|172057895|ref|YP_001814355.1| integrase family protein [Exiguobacterium sibiricum 255-15]
 gi|171990416|gb|ACB61338.1| integrase family protein [Exiguobacterium sibiricum 255-15]
          Length = 292

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 153/314 (48%), Gaps = 32/314 (10%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           + F++L  R+++L+ + IER LS  T +SY+   RQ+  F   +    I + T R+    
Sbjct: 5   LEFDVL--RKSFLRYVHIERQLSPNTGRSYDQTLRQYAAFCLDHQLGSIELATARR---- 58

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSL 125
               ++     QK    ++ + +S +K F ++     +T ++N +N    ++  K+  +L
Sbjct: 59  ----YLFALYDQKASKSTIAQKVSCLKQFGRF-----VTRDTNDVNPFEGLKAPKRVQTL 109

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P  L   +         L     +  +  RN A++ LLY  G+R+SE   L  +++  D 
Sbjct: 110 PTFLVPSEY-----ERFLEVFRTSDALGVRNVALIELLYATGMRVSELAGLNVKDLDSDL 164

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             + + GKG K RI P+    RKA+ +Y  L       + +  +F    G+ L     ++
Sbjct: 165 EYVHVYGKGRKERITPIGSFARKALTDY--LAERQPTEDEEQAVFLSRSGRRLTTDGIRK 222

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +++   +L      T H LRHSFAT LL  G DLR++Q +LGH  LSTT  YT+V ++ 
Sbjct: 223 ILKKADPFLSK--HVTPHALRHSFATDLLERGADLRAVQELLGHASLSTTGQYTHVTTER 280

Query: 306 GGDWMMEIYDQTHP 319
               +  +Y Q HP
Sbjct: 281 ----LRHVYQQAHP 290


>gi|239827068|ref|YP_002949692.1| integrase [Geobacillus sp. WCH70]
 gi|239807361|gb|ACS24426.1| integrase family protein [Geobacillus sp. WCH70]
          Length = 301

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 143/283 (50%), Gaps = 14/283 (4%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-I 83
           L+IE+  S  T+  Y  D R F  FL    +   ++Q +  ++ T +R FI  + T++ +
Sbjct: 14  LQIEKNYSLNTVDGYAYDLRCFENFLV---QHGYSVQ-LNNITKTHVRRFIQHQITKENV 69

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
             R++ R +S +KSF KY  K  +     ++ +   K  + LP  +    +L+ +  +  
Sbjct: 70  KPRTIYRRISCLKSFSKYCVKENLIDNDFMIGIDTPKTDSKLPTYM----SLSELRKLFH 125

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
               +   +  RN  +  LL   G+R SE + LT + I    +T+RI GKG K R++PL 
Sbjct: 126 FLEQDNSRMAMRNHLLFKLLATTGMRRSEIVELTWEQIDLSNNTIRIYGKGKKERLLPLH 185

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TA 262
           P V   +  Y +    +  L+   P+F    GK LNP    +  + + +  GLP    + 
Sbjct: 186 PMVVPLMKSYMESLE-EYQLHPSQPVFLNKNGKKLNPRGLHKIFKDILQKAGLPPQRFSL 244

Query: 263 HTLRHSFATHLLSNGG---DLRSIQSILGHFRLSTTQIYTNVN 302
           H LRH+FAT L+       DLR++Q +LGH  L TTQ+YT+V+
Sbjct: 245 HHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVD 287


>gi|220904455|ref|YP_002479767.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868754|gb|ACL49089.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 310

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 144/303 (47%), Gaps = 21/303 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQTIRQLSYTEIRAFISKRR 79
           W   L  +RGLS  T+ SY  D   F +F     + E ++ Q   Q    EI  +++  R
Sbjct: 21  WQDYLLAQRGLSPQTVASYGQDLENFFLFRQELAQGEAVSPQPDEQ----EIFLYLAWLR 76

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            ++   R+L R LS +++F  +  +      +    + N K    LP  L+  +  +L+ 
Sbjct: 77  ARQNTGRTLARRLSALRAFFDFAVQENAIKNNPAQLLDNPKLPQHLPEVLSRDEMESLLA 136

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              L           R+  IL LLY  GLR+SE   L   ++   +  +R+ GKG K R+
Sbjct: 137 RPDLRDRG-----GQRDRCILELLYAAGLRVSELCDLCLPDLDLQRGLVRVFGKGAKERL 191

Query: 200 VPLLPSVRKAILEYY--DLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           VPL   + + +LE Y  D  P F    N    LF    G+ L      + +++     G+
Sbjct: 192 VPLH-DLMQNMLENYIRDWRPAFSPTGN---QLFVNRSGRALTRQYIWKMVKKYALEAGI 247

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HT RHSFATHLL  G DLR++Q +LGH  +S T+IYT+V ++     +  I+ +
Sbjct: 248 RRPVSPHTFRHSFATHLLEGGADLRAVQLLLGHADISATEIYTHVQAER----LRSIHRK 303

Query: 317 THP 319
            HP
Sbjct: 304 FHP 306


>gi|260186653|ref|ZP_05764127.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           CPHL_A]
 gi|289447315|ref|ZP_06437059.1| integrase [Mycobacterium tuberculosis CPHL_A]
 gi|289420273|gb|EFD17474.1| integrase [Mycobacterium tuberculosis CPHL_A]
          Length = 311

 Score =  112 bits (281), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 143/310 (46%), Gaps = 19/310 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L +L IERG++  TL SY  D R++   L     E+  I  + ++   ++  F+   
Sbjct: 9   QGYLDHLTIERGVAANTLSSYRRDLRRYSKHL-----EERGITDLAKVGEHDVSEFLVAL 63

Query: 79  R-------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           R       T  +   S  R+L  ++   ++     +        +R    S  LP++L  
Sbjct: 64  RRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLVELDVARAVRPPTPSRRLPKSLTI 123

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            + L+L++        +   +  RN A+L LLY  G RISEA+ L   +I     ++ ++
Sbjct: 124 DEVLSLLEGAGGDKPSDGP-LTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLR 182

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQ 249
           GKG K R+VP+      A+  Y      DL    +    +F   RG  L+     + ++ 
Sbjct: 183 GKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQD 242

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+    + H LRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V        
Sbjct: 243 AAERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHA---- 298

Query: 310 MMEIYDQTHP 319
           + E++   HP
Sbjct: 299 LREVWAGAHP 308


>gi|313204183|ref|YP_004042840.1| integrase family protein [Paludibacter propionicigenes WB4]
 gi|312443499|gb|ADQ79855.1| integrase family protein [Paludibacter propionicigenes WB4]
          Length = 293

 Score =  112 bits (281), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 143/299 (47%), Gaps = 13/299 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +LQ L+ E+  S  T+ SY  D  QF  FL    +E         ++  +I+ +I    +
Sbjct: 5   FLQYLQYEKNYSSHTVLSYNTDLIQFCNFLNVTPDE----FDPNSVNSQQIQQWILSLMS 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  R+L R +S +KSF  +L  R+++  +  L +   K    +P    E +    +DN
Sbjct: 61  VDLSARTLSRKISTLKSFWHFLLSRRLSKHNPTLKIILPKTKKPIPAFFKENEMTAALDN 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +   S E      RN  IL   Y  G+R+SE L++  ++I     T+R+ GK +K RI+
Sbjct: 121 SMKPDSFEY----TRNRLILETFYLTGIRLSELLNIQDKDIDHSAGTIRVIGKRNKERII 176

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+  S+   I  Y  L    +++  +  LF    GK + P +    + +    +      
Sbjct: 177 PIDKSLINDIERYITLRNESIDI-FEPNLFVRNNGKKMYPKMLYNIVHENMSEVSSLHKR 235

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           + H LRH+FAT LL+ G D+ +++ +LGH  LS TQ+YT+       + +  IY   HP
Sbjct: 236 SPHVLRHTFATSLLNGGADINAVKELLGHSSLSATQVYTHT----SFEELYNIYKHAHP 290


>gi|332678799|gb|AEE87928.1| Tyrosine recombinase xerC [Francisella cf. novicida Fx1]
          Length = 292

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 161/322 (50%), Gaps = 45/322 (13%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+   N+L NL   +  S+ T+ +Y+ D  Q          + ++ + I  L++++I  +
Sbjct: 4   LEHINNFLDNLIYLKNYSQETINNYQRDLLQL--------NKVLSDKNIISLTHSDILIW 55

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I K   Q    ++L+R LS ++SF  +L   +I +++    ++  K S  LP+ +N  + 
Sbjct: 56  IKKLHAQGNSPKTLQRKLSSVRSFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDEL 115

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D   ++ S++   I+AR+ A   LLY CG+R+SE  S+  ++I   Q  +R+ GKG
Sbjct: 116 AYLLD---VNPSND---IEARDIACFDLLYSCGIRLSELSSVELKDISISQKNIRVTGKG 169

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----------LFRGIRGKPLNPGVF 243
           +K RIV            Y+       NLN  L            LF    GK L     
Sbjct: 170 NKQRIV------------YFGTKTLS-NLNRWLKIRDSLKPSSDYLFISRDGKHLTNRSI 216

Query: 244 QRYIRQL-RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           Q+ +    ++Y    +    H LRHSFA+H+L +  DL +++ +LGH  +S+TQIYT++N
Sbjct: 217 QKRLEIFAQKYASRHIH--PHMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLN 274

Query: 303 SKNGGDWMMEIYDQTHPSITQK 324
            +     +  ++D+ HP   +K
Sbjct: 275 FQQ----LASVFDKAHPRAKKK 292


>gi|161523917|ref|YP_001578929.1| site-specific tyrosine recombinase XerD [Burkholderia multivorans
           ATCC 17616]
 gi|189351322|ref|YP_001946950.1| site-specific tyrosine recombinase XerD [Burkholderia multivorans
           ATCC 17616]
 gi|160341346|gb|ABX14432.1| tyrosine recombinase XerD [Burkholderia multivorans ATCC 17616]
 gi|189335344|dbj|BAG44414.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
          Length = 316

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 141/297 (47%), Gaps = 19/297 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E GL++ TL +Y  D   F  +LA   +  +          T +  +I+ R   K  
Sbjct: 35  LWLEHGLARNTLDAYRRDLTLFSQWLAATHDAALDAA-----DETMLTGYIAARSDGKA- 88

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R LS  + +  +  +    +    L + + K++   P  L+E Q   L+    + 
Sbjct: 89  -TSSNRRLSVFRRYYGWAVREHRASADPTLRIASAKQAARFPSTLSEAQVEALLGAPDIA 147

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           T      +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+VP   
Sbjct: 148 TP-----LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPF-G 201

Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            V    +E Y  +  P  L       LF   RG  +    F   I++  ++  +    + 
Sbjct: 202 EVAHGWIERYLREARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQHADVRAHLSP 261

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++ Q HP
Sbjct: 262 HTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER----LRTLHAQHHP 314


>gi|138895282|ref|YP_001125735.1| integrase/recombinase [Geobacillus thermodenitrificans NG80-2]
 gi|134266795|gb|ABO66990.1| Integrase/recombinase [Geobacillus thermodenitrificans NG80-2]
          Length = 301

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 143/283 (50%), Gaps = 14/283 (4%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-I 83
           L+IE+  S  T+  Y  D R F  FL    +   ++Q +  ++ T +R FI  + T++ +
Sbjct: 14  LQIEKNYSLNTVDGYAYDLRCFENFLV---QHGYSVQ-LNSITKTHVRRFIQHQITKENV 69

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
             R++ R +S +KSF KY  K  +     ++ +   K  + LP  +    +L+ +  +  
Sbjct: 70  KPRTIYRRISCLKSFSKYCVKENLIDNDFMIGIDTPKTDSKLPTYM----SLSELRKLFH 125

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
               +   +  RN  +  LL   G+R SE + LT + I    +T+RI GKG K R++PL 
Sbjct: 126 FLEQDNSRMAMRNHLLFKLLATTGMRRSEIVELTWEQIDLSNNTIRIYGKGKKERLLPLH 185

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TA 262
           P V   +  Y +    +  L+   P+F    GK LNP    +  + + +  GLP    + 
Sbjct: 186 PMVVPLMKSYMESLE-EYQLHPSQPVFLNKNGKKLNPRGLHKIFKDILQKAGLPPQRFSL 244

Query: 263 HTLRHSFATHLLSNGG---DLRSIQSILGHFRLSTTQIYTNVN 302
           H LRH+FAT L+       DLR++Q +LGH  L TTQ+YT+V+
Sbjct: 245 HHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVD 287


>gi|312884205|ref|ZP_07743916.1| site-specific tyrosine recombinase XerC [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368133|gb|EFP95674.1| site-specific tyrosine recombinase XerC [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 310

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 156/311 (50%), Gaps = 20/311 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N+ + L  E+GLS  T ++Y    +Q L  +AF   + + I+    +    +R   SK  
Sbjct: 18  NFYEYLRAEKGLSLHTQRNY----KQQLETMAFQLVQ-LGIEDWSSVDAAWVRQLASKGM 72

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +   SL   LS +++F  +L  R     +    +   +K   LP+ L+  +      
Sbjct: 73  RDGMKASSLATRLSSLRAFFDFLILRGEIAANPAKGVSAPRKKRPLPKNLDVDEV----- 127

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           N LL    +   +  R+ AI+ L+YG GLR++E +++  ++I   +  LR+ GKG+K R 
Sbjct: 128 NQLLEVDEDDP-LAVRDRAIMELMYGAGLRLAELVNVDLKDIRTSRGELRVVGKGEKERK 186

Query: 200 VPLLPSVRKAIL--EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           VP      +A++  E +      L+   +  LF    G  ++    Q+ + +  +   + 
Sbjct: 187 VPF---AGQAVIWVEKWLRVRGQLSDPNESALFVSKLGGRISHRSVQKRMAEWGQKQAVS 243

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ ++    + E+YDQ 
Sbjct: 244 SHISPHKLRHSFATHMLESSQNLRAVQELLGHENISTTQIYTHLDFQH----LAEVYDQA 299

Query: 318 HPSITQKDKKN 328
           HP   +K +K 
Sbjct: 300 HPRARKKGRKE 310


>gi|238651031|ref|YP_002916888.1| site-specific tyrosine recombinase XerD [Rickettsia peacockii str.
           Rustic]
 gi|238625129|gb|ACR47835.1| site-specific tyrosine recombinase XerD [Rickettsia peacockii str.
           Rustic]
          Length = 306

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 151/311 (48%), Gaps = 50/311 (16%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L  ER LSK ++ SY+ D   F  +LA +   ++ I T        IR +I    +
Sbjct: 7   FLEMLLAERALSKNSILSYKRDLFDFQNYLAKHKLSELNITT------ENIRDWIEYLAS 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS+ R +S IKS+ ++L     T  + +LN+   K  N LP  L+  Q    + +
Sbjct: 61  DDLQARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIAQ----IKS 116

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-------LRIQGK 193
           +L H S +      R +A+++LLY  GLR+SE +SL   +I+ ++++         + GK
Sbjct: 117 LLEHCSQDNSPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNKTSTGEVRKIFSVLGK 176

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI---RGKPLN----------P 240
           G+K R++ +      +I +Y  +              RG+   + KP N           
Sbjct: 177 GNKERVIVINEQAVISIAKYLAI--------------RGVFVNKAKPRNLIYLFPSSALA 222

Query: 241 GVFQR-----YIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G   R      ++    Y GL     + H LRHSFA+HLL  G DLR IQ +LGH  +ST
Sbjct: 223 GYMTRQNFAILLKSAALYAGLNHEYISPHILRHSFASHLLEGGADLRVIQELLGHADIST 282

Query: 295 TQIYTNVNSKN 305
           TQIYT++ + +
Sbjct: 283 TQIYTHLQTNH 293


>gi|298373089|ref|ZP_06983079.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275993|gb|EFI17544.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058]
          Length = 294

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 156/305 (51%), Gaps = 20/305 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRAFISK 77
           + +L+ L+ E+  S  T+ SY  D  QF    A+Y+  +I   T I +    +IR +I++
Sbjct: 3   EEYLRYLQYEKNYSSRTVSSYRKDINQFT---AYYS--RINNSTDISKAEIDDIRLWIAE 57

Query: 78  R-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA-L 135
                KI  RS+ R LS +KSF K+L ++ I  +S+ +++   K   SLP    EK   L
Sbjct: 58  LISVNKITSRSVCRKLSSMKSFYKFLLQKNII-DSSPVDVVAPKIIKSLPVFFTEKDINL 116

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
              D +L   S ET    ARN+ ++ + Y  G+R  E + L   +I  ++ T+++ GK  
Sbjct: 117 LGTDEILPDDSFET----ARNALMIEIFYQTGIRRMELIELKISDIDFERKTIKVLGKRR 172

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYL 254
           K R VP   ++   I  Y  +    +  +    LF    G+ L +  V+    R+L   +
Sbjct: 173 KERFVPFGEALENQIKHYLSIRQKRITTDNDY-LFVTKHGRQLYDKAVYNIVTRELGS-I 230

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
                 + HTLRH+FAT +L NG DL SI+ +LGH  L+ TQ+YT+ + K     + ++Y
Sbjct: 231 TTKTKHSPHTLRHTFATTMLDNGADLNSIKELLGHSSLAATQVYTHTSFKE----LQKLY 286

Query: 315 DQTHP 319
             THP
Sbjct: 287 QNTHP 291


>gi|152993773|ref|YP_001359494.1| phage integrase family site specific recombinase [Sulfurovum sp.
           NBC37-1]
 gi|151425634|dbj|BAF73137.1| site-specific recombinase, phage integrase family [Sulfurovum sp.
           NBC37-1]
          Length = 280

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 155/308 (50%), Gaps = 38/308 (12%)

Query: 13  ELLKER-QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           E LKE  + +L  L   RG S++++ +YE   RQ      FY E+ I++     L  T  
Sbjct: 4   EKLKEYIETFLDYLLDVRGYSEVSVTTYEIALRQMSGVSHFYEEDGISV-----LDITPF 58

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           R  I K        +++ + LS ++SF+KYL+ +       ++   ++K   SLP+ + E
Sbjct: 59  RFNIVKN-----SKKTIVKKLSAVRSFVKYLEDQ-CNIPVKLIADESIKVPQSLPKPIEE 112

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           +     ++ VL   + E K +       + +LYG GLRISE   L  ++I  +   ++I 
Sbjct: 113 Q----YIEEVLAKANVEEKLL-------ISMLYGLGLRISELSGLKLEDIKGEW--IQIH 159

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG+K+R +PL+ S++K I  Y      D N   +    +G    P+N    +  + +L 
Sbjct: 160 GKGNKVRELPLMKSLQKLIGVY-----MDQNGPKRYLFEKG--NAPMNAAQLRYKLTKLF 212

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +  GL    T H LRHSFATHLL++G  +  +  +LGH  ++TTQ+YT + S       M
Sbjct: 213 KKEGL--KVTPHQLRHSFATHLLNHGARIADVSELLGHETMATTQVYTKLGSVKK----M 266

Query: 312 EIYDQTHP 319
           + Y   HP
Sbjct: 267 QEYMSAHP 274


>gi|309810355|ref|ZP_07704190.1| tyrosine recombinase XerD [Dermacoccus sp. Ellin185]
 gi|308435668|gb|EFP59465.1| tyrosine recombinase XerD [Dermacoccus sp. Ellin185]
          Length = 311

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 140/311 (45%), Gaps = 11/311 (3%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           S EL +    WL +L +ERGLS  TL +Y  D  ++L +LA        + ++  +  + 
Sbjct: 7   SLELTQVMTQWLHHLRVERGLSPHTLAAYRRDVTRYLGYLA-----ASGVTSLDGVEESR 61

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           + AF+   R    G   L  S +             ++ E++  +         LPR L 
Sbjct: 62  VEAFLRSLREGGQGHPPLAASSAARALVAVRRLHAFVSLETDAPDAATDVAPPRLPRKLP 121

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           +   L  V+ +L            R+ A+L +LYG G R+SE + L   ++     +LR+
Sbjct: 122 KAIPLADVERLLAAAGDGEDAGSLRDRALLEVLYGVGARVSEVVGLDVDDVDLMSRSLRL 181

Query: 191 QGKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            GKG K RIVPL      A+  Y   +             +F   RG  L+       +R
Sbjct: 182 FGKGSKERIVPLGRYAADALGSYLTRERPALAAKGKAGAAVFLNQRGGRLSRQSVFGLVR 241

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GL    + HTLRHS+ATHLL  G D+R +Q +LGH  ++TTQIYT V+ +    
Sbjct: 242 RAAEVAGLDGEISPHTLRHSYATHLLEGGADVRVVQELLGHASVTTTQIYTMVSVQQ--- 298

Query: 309 WMMEIYDQTHP 319
            + E +   HP
Sbjct: 299 -LRETFAAAHP 308


>gi|72161078|ref|YP_288735.1| site-specific tyrosine recombinase XerC [Thermobifida fusca YX]
 gi|71914810|gb|AAZ54712.1| tyrosine recombinase XerC subunit [Thermobifida fusca YX]
          Length = 303

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 136/298 (45%), Gaps = 16/298 (5%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           ++L +ERG S  T+++Y  D R  L +LA           +  L    +R ++       
Sbjct: 19  RHLRVERGCSPHTVRAYLTDVRSLLDYLA-----DTGAGGLEDLDLATLRGWLGTLHDAG 73

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
               ++ R  +  + F  YL +         L +   ++   LP  L+E QA  +     
Sbjct: 74  ASRATMARRTAAARVFTAYLHRSGRLATDPGLRLATPRRHRRLPAVLDEDQAARVCAAA- 132

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
                E   +  R SA++ +LY   +R++E   L   ++  ++ TLR+ GKG + R+VP+
Sbjct: 133 --RDGEESPLVLRRSAVVEVLYSTAIRVAELCGLDLDDVDWERHTLRVLGKGGRERVVPI 190

Query: 203 -LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            +P++        D  P     +    LF G RG  L     +R +      +     T 
Sbjct: 191 GVPALDAVDRWLRDGRPQWATAHSGRALFLGARGGRLGERTARRDVYAATAAVA---RTG 247

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            H LRHS ATHLL+ G DLRS+Q ILGH  L++TQIYT+V+       +  +Y Q HP
Sbjct: 248 PHGLRHSAATHLLNGGADLRSVQEILGHASLASTQIYTHVSIGR----LASVYQQAHP 301


>gi|254368999|ref|ZP_04985012.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121920|gb|EDO66090.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 292

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 162/315 (51%), Gaps = 31/315 (9%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+   N+L NL   +  S+ T+ +Y+ D  Q          + ++ + I  L++++I  +
Sbjct: 4   LEHINNFLDNLLYLKNYSQETINNYQRDLLQL--------NQALSDKNIISLTHSDILIW 55

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I +   Q    ++L+R LS ++SF  +L   +I +++    ++  K S  LP+ +N  + 
Sbjct: 56  IKRLHAQGNSPKTLQRKLSSVRSFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDEL 115

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D   ++ S++   I+AR+ A   LLY CG+R+SE  S+  ++I   Q  +R+ GKG
Sbjct: 116 AYLLD---INPSND---IEARDIACFDLLYSCGIRLSELSSVELKDISISQKNIRVTGKG 169

Query: 195 DKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +K RIV      L ++ + +     L P          LF    GK L     Q+ +   
Sbjct: 170 NKQRIVYFGTKTLSNLNRWLKIRDSLKPS------SDYLFISRDGKHLTNRSIQKRLEIF 223

Query: 251 -RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            ++Y    +    H LRHSFA+H+L +  DL +++ +LGH  +S+TQIYT++N +     
Sbjct: 224 AQKYASRHIH--PHMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQ---- 277

Query: 310 MMEIYDQTHPSITQK 324
           +  ++D+ HP   +K
Sbjct: 278 LASVFDKAHPRAKKK 292


>gi|15677703|ref|NP_274864.1| integrase/recombinase XerC [Neisseria meningitidis MC58]
 gi|34223071|sp|Q9JXV6|XERC_NEIMB RecName: Full=Tyrosine recombinase xerC
 gi|7227126|gb|AAF42202.1| integrase/recombinase XerC [Neisseria meningitidis MC58]
 gi|325139527|gb|EGC62067.1| tyrosine recombinase XerC [Neisseria meningitidis CU385]
 gi|325200925|gb|ADY96380.1| tyrosine recombinase XerC [Neisseria meningitidis H44/76]
          Length = 301

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 124/244 (50%), Gaps = 11/244 (4%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +G+R+L R LS  + +  +L KR +       +++  K+   +P+AL ++    ++D  +
Sbjct: 69  LGERTLARKLSSWRQYCVWLVKRGLMHADPTADIKPPKQPERVPKALPQEWLNRMLDLPV 128

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
                    +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GKG K R VPL
Sbjct: 129 ----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVIGKGRKQRQVPL 184

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           +    +A+  Y    P     +    LF G  G  L+    Q+ + Q     G     + 
Sbjct: 185 VGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 241

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +YD+ HP   
Sbjct: 242 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAHPRAK 297

Query: 323 QKDK 326
           ++D+
Sbjct: 298 RQDE 301


>gi|270264257|ref|ZP_06192524.1| site-specific tyrosine recombinase XerC [Serratia odorifera 4Rx13]
 gi|270041906|gb|EFA15003.1| site-specific tyrosine recombinase XerC [Serratia odorifera 4Rx13]
          Length = 303

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 156/312 (50%), Gaps = 21/312 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           V+  L +    +L+ L++ER LS LT  SY   +RQ    +A   E  +T      L   
Sbjct: 4   VAASLQQPVDAFLRYLKVERQLSPLTQLSY---SRQLQALMALAQEMGVT--EWPALDAA 58

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++R   ++ +   +   SL   LS ++SFL +   +     +    +R  +    LP+ +
Sbjct: 59  KVRMLAARSKRAGLQSSSLALRLSALRSFLDWQVSQGALIANPAKGIRTPRSGRHLPKNI 118

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  +   L+ N+ L+       +  R+ A+L ++YG GLR+SE + L  +++      + 
Sbjct: 119 DVDEINQLL-NIDLNDP-----LAVRDRAMLEVMYGAGLRLSELVGLDCRHVDLAAGDIW 172

Query: 190 IQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           + GKG K R +P+    R A+  LE++ L   DL       +F   +GK ++    Q+  
Sbjct: 173 VLGKGSKERKLPI---GRTAVTWLEHW-LAMRDLFGPADDAMFLSNQGKRISTRNVQKRF 228

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +     G+      H LRHSFATH+L + GDLR++Q +LGH  L+TTQIYT+++ ++  
Sbjct: 229 AEWGVKQGVNSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH-- 286

Query: 308 DWMMEIYDQTHP 319
             +  +YD  HP
Sbjct: 287 --LANVYDAAHP 296


>gi|148978770|ref|ZP_01815150.1| site-specific tyrosine recombinase XerC [Vibrionales bacterium
           SWAT-3]
 gi|145962191|gb|EDK27475.1| site-specific tyrosine recombinase XerC [Vibrionales bacterium
           SWAT-3]
          Length = 310

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 149/302 (49%), Gaps = 16/302 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  E+GLS  T ++Y+         L       + ++  RQ+    +R   SK     + 
Sbjct: 24  LRSEKGLSLHTQRNYKQQLETMAEHLV-----TLGLKDWRQVDAAWVRQLASKGMRDGMK 78

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S+   LS ++SF  +L  R   T +    +   +K   LP+ L+  +   L+D     
Sbjct: 79  ASSIATRLSSLRSFFDFLVLRGEITANPAKGVSAPRKQRPLPKNLDVDEVGQLLD----- 133

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
             +E   +  R+ A++ ++YG GLR++E + +  ++++  Q  +R+ GKGDK R  P   
Sbjct: 134 -VNEDDPLSIRDRAMMEVMYGAGLRLAELVGINLKDVLSRQGEIRVIGKGDKERKAPF-S 191

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            + K  ++ +     +L    +  LF    G  ++    Q+ + +  +   +    + H 
Sbjct: 192 GLAKEWVDKWLRVRGELASPGEDALFVSKLGTRISHRSVQKRMEEWGKKQSVASHISPHK 251

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LRHSFATH+L +  +LR++Q +LGH  +STTQ+YT+++ ++    + + YDQ HP   +K
Sbjct: 252 LRHSFATHVLESSQNLRTVQELLGHENISTTQVYTHLDFQH----LAQAYDQAHPRARKK 307

Query: 325 DK 326
           +K
Sbjct: 308 NK 309


>gi|114327281|ref|YP_744438.1| integrase/recombinase xerD [Granulibacter bethesdensis CGDNIH1]
 gi|114315455|gb|ABI61515.1| integrase/recombinase xerD [Granulibacter bethesdensis CGDNIH1]
          Length = 290

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 151/310 (48%), Gaps = 28/310 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L+ L  ERG ++ TL +Y  D R +  + A +  + +            +R +++ +
Sbjct: 6   ESFLEMLAAERGAARNTLLAYGTDLRDWSGYAARHRVDPL------HADEAALRGYLAAQ 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                G R+  R LS ++ F ++L ++   ++     +   K   SLP+ L+E +    V
Sbjct: 60  SGAGNGPRTQSRRLSALRQFYRFLLEQGTRSDDPTALLDAPKLPRSLPKYLDEAE----V 115

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D +L     +    +    A L +LY  GLR+SE L+L  +    D   + ++GKG + R
Sbjct: 116 DALL-----QAAPAEPAAHAALEILYSTGLRVSEVLALPARAFRGDAPMMTVRGKGGRER 170

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGL- 256
           +VP+  +   A+                  LF G    KP+    F   ++++    GL 
Sbjct: 171 MVPVSAAAISAVAAMRS------GAEQSRWLFPGRDPAKPMTRQGFALMLKRVALQAGLD 224

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           P   + H LRH FA+HLL+ G DLRS+Q +LGH  ++TTQIYT+V S+     +  + D 
Sbjct: 225 PARVSPHVLRHCFASHLLARGADLRSLQMLLGHVDIATTQIYTHVLSER----LRALLDT 280

Query: 317 THP-SITQKD 325
            HP SIT +D
Sbjct: 281 CHPLSITAED 290


>gi|85713796|ref|ZP_01044786.1| tyrosine recombinase XerD [Nitrobacter sp. Nb-311A]
 gi|85699700|gb|EAQ37567.1| tyrosine recombinase XerD [Nitrobacter sp. Nb-311A]
          Length = 340

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 143/304 (47%), Gaps = 40/304 (13%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI--QTIRQ-LSYTEIRAFISK 77
           +L  L  E+G  + TL +Y  D      FLA      +    QT+R  L+  ++R F S 
Sbjct: 36  FLDMLAAEQGAGENTLDAYRRDLEDLSAFLARARRSFVIADTQTLRDYLNDLDLRGFKSS 95

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    S+ R LS ++   ++L   ++ ++     +   K+  SLP+ L+    +  
Sbjct: 96  ---------SVARRLSAMRHLFRFLLSERVRSDDPAAILSGPKRGRSLPKILS----IAD 142

Query: 138 VDNVLLHTSHETKWID---------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           VD +L     + +  D         AR   +L +LY  GLR+SE +SL       D   +
Sbjct: 143 VDRLLARAKADAESPDISPARRLRAARLYCLLEVLYATGLRVSELVSLPLSAARRDARMI 202

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ----------LPLFRGIRGKPL 238
            ++GKG K R+VPL  + R+A+  Y  L   D                 P F G  G  L
Sbjct: 203 VVRGKGGKERLVPLNDASRQAMANY--LVAIDDQRGAGKTAATRPKWLFPSF-GDSGH-L 258

Query: 239 NPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
               F R +++L    GL P   + H LRH+FA+HLL NG DLR +Q++LGH  +STTQI
Sbjct: 259 TRQHFARELKELAAAAGLAPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQI 318

Query: 298 YTNV 301
           YT+V
Sbjct: 319 YTHV 322


>gi|241206577|ref|YP_002977673.1| site-specific tyrosine recombinase XerD [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240860467|gb|ACS58134.1| tyrosine recombinase XerD [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 317

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 97/320 (30%), Positives = 156/320 (48%), Gaps = 23/320 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L+ +  ERG +  TLQSYE D      FL   TE  I +    + +  ++ A++S  
Sbjct: 10  ESFLEMMSAERGAAANTLQSYERDLDDVRSFL---TERSIRLT---EAASADLAAYLSSL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S  R L+ ++ F K+L    + T+     +   KK   LP+ +  ++   L+
Sbjct: 64  AREGFKPSSQARRLAAMRQFYKFLYAEGLRTDDPTGILDAPKKGRPLPKTMGVEEVGRLL 123

Query: 139 DNVLLHTSHETKWIDARNSAILYLL--YGCGLRISEALSLTPQNIMDDQST-LRIQGKGD 195
                           R   +  L   Y  G+R+SE +SL P  ++D +   L I+GKG+
Sbjct: 124 SQAEAEAEDTAPGQLQRLRMLALLELLYATGMRVSELVSL-PARVLDQEGRFLMIRGKGN 182

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNI----QLP-LFRGIRGKPLNP-GVFQRYIRQ 249
           K R+VPL  S   A+  Y  L   + N  +    + P LF     +   P  VF R ++ 
Sbjct: 183 KERLVPLSHSAISALKSYGRLLAAE-NAAVKERQESPWLFPSASKEGYLPRQVFARDLKN 241

Query: 250 LRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           L    GL P   + H +RH+FA+HLL+NG DLR +Q +LGH  +STTQIYT+V  +    
Sbjct: 242 LAIRAGLTPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER--- 298

Query: 309 WMMEIYDQTHPSITQKDKKN 328
             ++   QTH  + ++ KK+
Sbjct: 299 --LQQLVQTHHPLAKQAKKH 316


>gi|68536254|ref|YP_250959.1| integrase/recombinase [Corynebacterium jeikeium K411]
 gi|260578954|ref|ZP_05846857.1| tyrosine recombinase XerC [Corynebacterium jeikeium ATCC 43734]
 gi|68263853|emb|CAI37341.1| integrase/recombinase [Corynebacterium jeikeium K411]
 gi|258602928|gb|EEW16202.1| tyrosine recombinase XerC [Corynebacterium jeikeium ATCC 43734]
          Length = 301

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 122/234 (52%), Gaps = 10/234 (4%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           SL R  S ++ F  +L  R     + +  ++  K   +LPR L   QA  +++ +     
Sbjct: 75  SLSRLASSMRGFGAFLAHRGFVQANPVAALKAPKPQRTLPRVLRSDQASDMLNGLQPEGD 134

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
             T     R+ A++ LLY  G+R+SE       ++      LR+ GKG+K R+VP   +V
Sbjct: 135 AATPSA-IRDWAMVELLYATGIRVSELTGCDVNDVDFSNRLLRVTGKGNKTRVVPFGGTV 193

Query: 207 RKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
             A+ ++ ++     ++  + P LF G+RGK ++P   +  + ++ +    P   + H L
Sbjct: 194 VAALEKWLEVRE---DMAKETPALFVGVRGKRIDPRQVRTVVNRVTQAGPGP-RLSPHGL 249

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           RHS AT +L  G DLR +Q +LGH  +STTQIYT+V ++     +  +++Q HP
Sbjct: 250 RHSAATAILEGGADLRVVQELLGHANMSTTQIYTHVGTER----LKAVFNQAHP 299


>gi|261337550|ref|ZP_05965434.1| tyrosine recombinase [Bifidobacterium gallicum DSM 20093]
 gi|270277960|gb|EFA23814.1| tyrosine recombinase [Bifidobacterium gallicum DSM 20093]
          Length = 329

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 144/306 (47%), Gaps = 29/306 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + + L    GLS+ T+++Y  D  +    L       + I    Q++   +R ++++ 
Sbjct: 16  EEYARYLRANMGLSENTVRAYAKDAVRCCTAL-----HAMGISGFEQVTTDALRDWMAQE 70

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     SL R    ++ F  ++ +   T       +   K ++ LP  LNE+QA TL+
Sbjct: 71  -AQITSRTSLARRTVAVRRFFGWMAEHGKTATDPAAALHIPKAAHYLPDVLNEQQAQTLM 129

Query: 139 DNVLLHTS--------------HETKW-------IDARNSAILYLLYGCGLRISEALSLT 177
           + V                   H+ K        +  R+ A++ LLY  G+R++E   L 
Sbjct: 130 EQVDDEAGARGAVAQPQADGEQHDGKAQTPQQHALAQRDCAMVELLYATGIRVAELTGLN 189

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGK 236
             ++  D  T+R+ GKG+K R+VP     ++A+  + +     L  ++    LF G RG 
Sbjct: 190 MADVHADNRTIRVTGKGNKQRVVPYGIPAQRALDAWMEHGRAVLAAVSSGDALFLGSRGG 249

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            ++  + +  + +  +  G+P   + H LRHS ATHLL  G DLR +Q +LGH  L TTQ
Sbjct: 250 RIDQRIVREVVHREAQRAGVP-DISPHALRHSAATHLLDGGADLREVQEMLGHSSLRTTQ 308

Query: 297 IYTNVN 302
            YT+V+
Sbjct: 309 RYTHVS 314


>gi|261417486|ref|YP_003251169.1| integrase family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373942|gb|ACX76687.1| integrase family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327853|gb|ADL27054.1| site-specific recombinase, phage integrase family [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 297

 Score =  112 bits (280), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 154/303 (50%), Gaps = 26/303 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L +ER LS +T+QSY+ D R F+   A+  E  I ++ ++     E     + +  
Sbjct: 11  FLSHLGVERNLSPVTIQSYQEDLRHFI---AWLDENGIDLKDLQPEKLDEFLTLTAGQ-- 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           ++    S+ R  S ++ FLKY++ +     S    +   K  + LP+ L  ++    +D+
Sbjct: 66  EEYSPTSVARHFSSLRGFLKYMQIQGEYDYSTESMLATPKLGHYLPQYLTREE----IDS 121

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           V    ++    +  R++A++ L+Y  GLRISEAL +    I  +   L   GKG+K R+V
Sbjct: 122 VFESAANGKNPL--RDTALIELMYSGGLRISEALGIKLSQIDLENEWLMPIGKGNKQRLV 179

Query: 201 PLLPSVR---KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYLGL 256
           PL    +   +A +E           NI L       GKP++  G ++  I QL   + L
Sbjct: 180 PLGSKAKENLRAWIEEGRPLTHPTTDNIIL----NAHGKPMSRMGAWK--IVQLHT-MHL 232

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HT RHSFATH L  G DLR +Q +LGH  +STTQIYT+V+     D++ + +  
Sbjct: 233 SKQVSPHTFRHSFATHCLEAGMDLRVLQELLGHADISTTQIYTHVDK----DFIKQEHRS 288

Query: 317 THP 319
            HP
Sbjct: 289 FHP 291


>gi|86139973|ref|ZP_01058538.1| tyrosine recombinase XerD [Roseobacter sp. MED193]
 gi|85823391|gb|EAQ43601.1| tyrosine recombinase XerD [Roseobacter sp. MED193]
          Length = 328

 Score =  112 bits (280), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 147/303 (48%), Gaps = 26/303 (8%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           E G ++ TL +Y  D +    +LA +           + +  +I A++     + +   +
Sbjct: 21  ELGAARNTLLAYGRDLKDAASWLAHHDNR------FSEAAREDIEAYLISCNAEGLSRAT 74

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             R LS ++    +  +    +++  + ++   ++ +LP+ L     +  VD  LL  + 
Sbjct: 75  RARRLSALRQLYHFAFEEGWRSDNPAIQIKGPGRAKTLPKTLE----VIEVDR-LLDAAR 129

Query: 148 ETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           +T    A   RN+ ++ LLY  G+R+SE +SL       D + L +QGKG K R+VPL P
Sbjct: 130 QTGRKPADRLRNTCLMELLYATGMRVSELMSLPVAAARGDPNMLLVQGKGGKERMVPLSP 189

Query: 205 SVRKAILEYY---DLCPFDLNL--NIQLPLFRGIRGKP--LNPGVFQRYIRQLRRYLGL- 256
             R+A+  +    D    D     N         RGK   L    F   I+ L    G+ 
Sbjct: 190 PAREALRAWLMQRDEADEDSQAKGNPGSKFLFPSRGKEGHLTRHWFYLLIKDLAVTGGVD 249

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           P   T HTLRH+FATHLL+NG DLR+IQ++LGH  ++TT+IYT+V        + E+  Q
Sbjct: 250 PKKVTPHTLRHAFATHLLANGADLRAIQALLGHADIATTEIYTHVLDAR----LSELVLQ 305

Query: 317 THP 319
            HP
Sbjct: 306 HHP 308


>gi|218288287|ref|ZP_03492586.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218241646|gb|EED08819.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 307

 Score =  112 bits (280), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 141/290 (48%), Gaps = 19/290 (6%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
            S  T++SY  D   F  +L     +   +  +  LS  ++R   S    +     S+ R
Sbjct: 20  FSPRTVRSYGQDLEAFRQWL-----DDRGVYDLDALSTRDVRMHASDLLAKGAAKSSVAR 74

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            LS +++FL++  +R    +    N+R  K+   LPR L+E++   L+D+V         
Sbjct: 75  RLSCLRTFLRFCAERGWVRQVMAENVRLPKRDRRLPRYLHEEEVAALIDHV-----GGDD 129

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
           ++  R+ A+L  LY  G+R+SE ++L   ++       R+ GKG + R V +    R+A+
Sbjct: 130 FVALRDRALLEFLYATGVRVSECVNLDVGDLDLSTGFARVLGKGGRERYVIV---GRRAV 186

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYLGLPLSTTAHTLRHSF 269
                  P    +     +F   RG  L     +R + R+++   GL  S   H LRHSF
Sbjct: 187 DALRRYLPLRDRMARCSAVFINRRGGRLTDRSVRRVLERRIQEVPGLR-SIHVHGLRHSF 245

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           ATH+L+ G DLRS+Q +LGH  LS+TQIYT+ + +     +   Y   HP
Sbjct: 246 ATHMLNGGADLRSVQELLGHASLSSTQIYTHTSREQ----LARAYYAAHP 291


>gi|260426671|ref|ZP_05780650.1| tyrosine recombinase XerD [Citreicella sp. SE45]
 gi|260421163|gb|EEX14414.1| tyrosine recombinase XerD [Citreicella sp. SE45]
          Length = 308

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 139/291 (47%), Gaps = 18/291 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+    ERG +  T  +Y  D   F  +L   T     + T ++    ++  ++    
Sbjct: 9   GFLEAQAAERGAADNTTAAYARDLADFTRWL---TARGAGLDTAQR---ADVEDYLVTCE 62

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +   +  R LS IK   ++  +  + +++  + +    K   LP+ L+ ++   L++
Sbjct: 63  AEGLAISTRARRLSSIKQLYRFAFEEGLRSDNPAVQISGPGKPKRLPKTLSIEEVDRLIE 122

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                   E   +  RN+ ++ LLY  G+R++E ++L       D   L I+GKG K R+
Sbjct: 123 AAASQGRTEDDRL--RNACLMQLLYATGMRVTELVTLPVSAARGDPRMLLIRGKGGKERM 180

Query: 200 VPLLPSVRKAILEYY------DLCPFDLNLNIQLPLF--RGIRGKPLNPGVFQRYIRQLR 251
           VPL P  R A+  +       +           + LF  RG  G  L    F   I+++ 
Sbjct: 181 VPLSPPARVALATWLSRRDEQEAVAHAAGKPASVHLFPSRGKAGH-LTRHAFYLLIKEIA 239

Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              G+ P   T HTLRH+FATHLL NG DLR+IQ+ LGH  ++TT+IYT+V
Sbjct: 240 VSAGVSPGKVTPHTLRHAFATHLLQNGADLRAIQTFLGHADVATTEIYTHV 290


>gi|218131354|ref|ZP_03460158.1| hypothetical protein BACEGG_02969 [Bacteroides eggerthii DSM 20697]
 gi|217986286|gb|EEC52623.1| hypothetical protein BACEGG_02969 [Bacteroides eggerthii DSM 20697]
          Length = 294

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 150/306 (49%), Gaps = 23/306 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L  L  ER  SK T++ Y+ D    ++ L  + EE +   T   +    IR +I+  
Sbjct: 5   DSFLDYLLYERNYSKGTVRYYQAD----ILELQKFGEELLGDLTPSDVDAGLIREWITSL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     ++ R LS ++S+ KYL ++ +     +  +   KK   LP  L E     L+
Sbjct: 61  MDRGCAPNTVNRKLSSVRSYYKYLLRKGMVAADPLQKITGPKKKKPLPVFLREGDVNRLL 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D+V      E      R+  I+ + Y  G+R+SE + L  ++I    S +++ GK +K R
Sbjct: 121 DDVDFGEGFEG----CRDRLIIEMFYATGMRLSELIGLDDKDIDFSASLIKVTGKRNKQR 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-----FRGIRGKPLNPGVFQRYIRQLRRY 253
           ++P    +R ++ EY ++       N  LP+     F    G+ LN  +    +++    
Sbjct: 177 LLPFDEELRCSMQEYVNV------RNQALPVRSDAFFIRKTGERLNRSIVAYIVKRNLSK 230

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +      + H LRH+FAT +L+NG DL SI+ +LGH  L+TT++YT+   +     + ++
Sbjct: 231 VVTVKKRSPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEE----LKKV 286

Query: 314 YDQTHP 319
           Y+Q HP
Sbjct: 287 YNQAHP 292


>gi|153830013|ref|ZP_01982680.1| tyrosine recombinase XerC [Vibrio cholerae 623-39]
 gi|148874498|gb|EDL72633.1| tyrosine recombinase XerC [Vibrio cholerae 623-39]
          Length = 311

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 154/304 (50%), Gaps = 16/304 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  E+GLS  T ++Y+        +L      ++ +    QL    +R  + + + Q + 
Sbjct: 24  LHTEKGLSLYTQRNYKQQLETMTQYLV-----QVGLTHWSQLDSAWVRQLVMQGKRQGMK 78

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S+   LS ++SFL +L  R     +    +   +K  +LP+ L+  +   L++     
Sbjct: 79  ASSIATRLSSLRSFLDFLILRGELEANPAKGVSAPRKQRTLPKNLDVDEMAQLLEVT--- 135

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
              +   +  R+ AI+ L+YG GLR++E +S+  +++   +  +R+ GKG+K R V    
Sbjct: 136 ---DDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVWFAG 192

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             ++ + ++  L    L  + +  LF    G  ++    Q+ + +  +   +    + H 
Sbjct: 193 QAQEWVGKWLKLRS-QLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPHK 251

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ ++    + ++YDQ HP   +K
Sbjct: 252 LRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQH----LAQVYDQAHPRARKK 307

Query: 325 DKKN 328
           +K +
Sbjct: 308 NKDD 311


>gi|309789594|ref|ZP_07684175.1| phage integrase family protein [Oscillochloris trichoides DG6]
 gi|308228330|gb|EFO81977.1| phage integrase family protein [Oscillochloris trichoides DG6]
          Length = 294

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 144/284 (50%), Gaps = 11/284 (3%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L ++  ++  S+ T  +Y  D  Q  +FLA    E    Q +   ++ +I AF+   
Sbjct: 6   EQFLVSMATDQMRSEHTCSAYRTDLEQLRLFLA--AREVADWQAV---THDDILAFMISL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R +     ++ R  + +KSF  +L +++I  +    ++ + K +   P+A+ +     L+
Sbjct: 61  RERGYAMSTMARRTAAMKSFFGFLLEQQIIKKDPTSHIDSPKVNRDRPKAITQFDMDELL 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +  L  +  E+     R+ A+L LL   G+R+SE ++L   +I     T+R + K  + R
Sbjct: 121 ELPLRSSGPES----LRDKAMLELLAATGMRVSELVTLELADISLSAGTVRCRSKSGRER 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           ++P+  +   A+ EY D+    L  + + P LF   RGK L    F   ++     +GL 
Sbjct: 177 VLPIGLTATTALEEYLDIARNQLVRSGETPILFLNHRGKQLTRQGFWLILKGYADQIGLH 236

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              T HTLRHSFA HL+  G DLR +Q  LGH  LSTTQIYT +
Sbjct: 237 -DLTPHTLRHSFAAHLVYEGADLREVQERLGHASLSTTQIYTQM 279


>gi|257068693|ref|YP_003154948.1| tyrosine recombinase XerD subunit [Brachybacterium faecium DSM
           4810]
 gi|256559511|gb|ACU85358.1| tyrosine recombinase XerD subunit [Brachybacterium faecium DSM
           4810]
          Length = 332

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 149/319 (46%), Gaps = 34/319 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L +L IERGLS  TL +Y  D R++L  LA    +   +   +QL       ++   
Sbjct: 24  EQYLSHLRIERGLSANTLAAYRRDLRRYLAELARRDIDATAVDP-QQLGR-----WLQSL 77

Query: 79  RTQKIGDRSLKRSLS--------GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           RT   G   L  S +        G+ SFL      ++++  +      L  S +LPR L 
Sbjct: 78  RTGADGGSVLSASSAARSLAAVRGLHSFLD---AERVSSSGDPAR---LVPSPALPRRLP 131

Query: 131 EKQALTLVDNVLLHTSHETKWIDA-----RNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
              A+  V+ ++      +   DA     R+ A+L +LYG G RISEA  L   +I   +
Sbjct: 132 HPLAIAQVEALIEAAGRPSTGRDATARALRDRALLEVLYGLGARISEATGLDVDDIDAQE 191

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLP-LFRGIRGKPLNPGVF 243
               ++GKGDK R+VP+     +A+  Y     P         P +F G RG  L     
Sbjct: 192 RAAVLRGKGDKHRVVPVGRFALEALEAYLTRGRPVLAARGTGTPAIFLGSRGTRLTRQAA 251

Query: 244 QRYIRQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            + +++         LP   + HTLRHS+ATHLL  G D+R++Q +LGH  ++TTQ+YT 
Sbjct: 252 WQVVQRAADAAELSDLPEPISPHTLRHSYATHLLHGGADVRAVQELLGHASVTTTQLYTQ 311

Query: 301 VNSKNGGDWMMEIYDQTHP 319
           V      D + E +   HP
Sbjct: 312 VTV----DSLRETHAGAHP 326


>gi|254457347|ref|ZP_05070775.1| phage integrase [Campylobacterales bacterium GD 1]
 gi|207086139|gb|EDZ63423.1| phage integrase [Campylobacterales bacterium GD 1]
          Length = 278

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 157/304 (51%), Gaps = 40/304 (13%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           +R  +LQ+LE  RG S+LT++SY+    + L +          ++ I + ++T I     
Sbjct: 8   KRVEFLQSLEDFRGYSELTIKSYDEAITEALRY----------VEIIEEDTHTTINLMPY 57

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           + +  ++  +++ + LS I++F+KYL   KI     +    ++K + +LP+ ++ K  L 
Sbjct: 58  RIKISQLNPKTISKKLSAIRTFVKYLNDNKIKI--YLKADESVKVAKTLPKPISHKHIL- 114

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
                L H     +++       + +LY  GLRISE  SL   +I D+   +R+ GKG+K
Sbjct: 115 ---EALEHAEFYERFV-------VTMLYSLGLRISELASLKLSDISDEW--IRVLGKGNK 162

Query: 197 IRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R VPLL + R+ I EY  + CP       ++ LF     + L+    +  + ++ + +G
Sbjct: 163 HRDVPLLRTTRELIDEYLSNNCP-------KIFLFEA-NDERLSENSLRYTVNKVFKRVG 214

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L +  T H LRHS+AT LL++   +  +  +LGH  ++TTQIYT    K G     + Y+
Sbjct: 215 LKV--TPHQLRHSYATALLNSSAPIADVSELLGHSSMATTQIYT----KLGSALKQQNYN 268

Query: 316 QTHP 319
           + HP
Sbjct: 269 KAHP 272


>gi|315646363|ref|ZP_07899481.1| integrase family protein [Paenibacillus vortex V453]
 gi|315278006|gb|EFU41326.1| integrase family protein [Paenibacillus vortex V453]
          Length = 294

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 148/301 (49%), Gaps = 16/301 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            ++  LE  + LS+ T++SY  D   F+ + A   + ++T    + ++ T +  ++ + R
Sbjct: 7   EYVTYLEEVKRLSRSTIESYRADLNGFIEYAA---DREVT--HPQDVNRTVLGLYLGRLR 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q     S  R  + ++SF +YL ++ +  +     +   K     P+A+  +Q    VD
Sbjct: 62  QQGKAASSQLRCTASLRSFFQYLVRQSVIGQDPTQLLDRPKPERKPPQAVTIEQ----VD 117

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            +L     +T    AR+ A+L LLY  G+++SE +SL+  ++  +   LR    G K RI
Sbjct: 118 KLLSAPDSDTPQ-GARDRAMLELLYASGIKVSELVSLSIHDLNMEMRFLRCAVPGGKERI 176

Query: 200 VPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +P+     +++  Y  D+    +    +  LF    G  L    F + I++  +   +  
Sbjct: 177 LPISQIAAQSVAYYMRDMRSQLIRDAEEEALFLNSLGTRLTRQGFWKIIKKYGKLAEIDE 236

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             T HTLRHSFA HLL NG DLRS+Q +LGH  LSTT +Y +         M E+YD  H
Sbjct: 237 EITPHTLRHSFAIHLLQNGADLRSVQEMLGHSALSTTGMYQSTKKS-----MKEVYDHYH 291

Query: 319 P 319
           P
Sbjct: 292 P 292


>gi|229520080|ref|ZP_04409508.1| tyrosine recombinase XerC [Vibrio cholerae TM 11079-80]
 gi|229342868|gb|EEO07858.1| tyrosine recombinase XerC [Vibrio cholerae TM 11079-80]
          Length = 311

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 154/304 (50%), Gaps = 16/304 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  E+GLS  T ++Y+        +L      ++ +    QL    +R  + + + Q + 
Sbjct: 24  LHTEKGLSLYTQRNYKQQLETMTQYLV-----QVGLTHWTQLDSAWVRQLVMQGKRQGMK 78

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S+   LS ++SFL +L  R     +    +   +K  +LP+ L+  +   L++     
Sbjct: 79  ASSIATRLSSLRSFLDFLILRGELEANPAKGVSAPRKQRTLPKNLDVDEMAQLLEVT--- 135

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
              +   +  R+ AI+ L+YG GLR++E +S+  +++   +  +R+ GKG+K R V    
Sbjct: 136 ---DDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVWFAG 192

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             ++ + ++  L    L  + +  LF    G  ++    Q+ + +  +   +    + H 
Sbjct: 193 QAQEWVGKWLKLRS-QLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPHK 251

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ ++    + ++YDQ HP   +K
Sbjct: 252 LRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQH----LAQVYDQAHPRARKK 307

Query: 325 DKKN 328
           +K +
Sbjct: 308 NKDD 311


>gi|326562807|gb|EGE13102.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 46P47B1]
 gi|326563212|gb|EGE13480.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 12P80B1]
 gi|326563472|gb|EGE13735.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 103P14B1]
 gi|326573782|gb|EGE23739.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 101P30B1]
          Length = 330

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 97/309 (31%), Positives = 146/309 (47%), Gaps = 26/309 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +W   L ++   SK T+ +Y+    QF  FL             R+   T  R F ++  
Sbjct: 29  SWCDELRLQ-NYSKHTITTYQTALIQFFNFLESDNYLGGDPLACRRQDLT--RFFSTRLE 85

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +KI   S K SLS I+ F ++L K+ +      +N     K  S PR L       L+ 
Sbjct: 86  EEKIKPISAKLSLSAIRIFYQFLIKQGVIA----VNPTTGYKIKSAPRKLPTVADELLIK 141

Query: 140 NVLLHTSHETK-----WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
            +L   + E       WI  R+ A+  L+Y  GLR+SE   L   ++  D   +R+ GKG
Sbjct: 142 QLLDQKTPEDTAKAYLWI--RDKAMFELMYSSGLRLSELAGLNMGDVNFDIGIVRVLGKG 199

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +K R VP+    +KA++   D  P   NL    N +        G  L+    Q  ++  
Sbjct: 200 NKTRQVPV---GKKAMIALQDYLPHR-NLWQKKNCKALFISERHGTRLSTRAIQLRLKVC 255

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+ L+   H LRH FA+H+LS+ GDLR+IQ +LGH  +STTQIYT+V+       +
Sbjct: 256 ATMAGIELNMYPHLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHVDFGA----L 311

Query: 311 MEIYDQTHP 319
            ++YD  HP
Sbjct: 312 TKVYDHAHP 320


>gi|103487281|ref|YP_616842.1| phage integrase [Sphingopyxis alaskensis RB2256]
 gi|98977358|gb|ABF53509.1| phage integrase [Sphingopyxis alaskensis RB2256]
          Length = 303

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 146/305 (47%), Gaps = 31/305 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ +  ERG S+ TL +Y  D  Q          E++    +       +R  ++  R+
Sbjct: 10  FLEMMAAERGASRNTLTAYRRDLEQ--------AAERVK-GPLGAADAAALRQLMADYRS 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +   S  R LS ++ F  +L       ++  L++        LPR L   +   L + 
Sbjct: 61  --LSASSAARKLSALRQFFAFLLDEGERADNPALDIARPATRRPLPRILTHDEIRRLFEQ 118

Query: 141 VLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            +     E     A R   +L LLYG GLR +E +SL  + ++ ++  L ++GKGDK R+
Sbjct: 119 AVAEAEGEAPPAGAVRMLLLLELLYGSGLRATELVSLPRRAVLREREYLIVRGKGDKERL 178

Query: 200 VPLLPSVRKAILEY----YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           VPL    R A   +     D  P+         LF   +       +FQ  +R L    G
Sbjct: 179 VPLSARARAAFDRWLPLLADGSPW---------LFPSGKAHISRVRLFQ-MLRDLAARAG 228

Query: 256 L-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           + P + + H LRH+FATHLL  G DLR++Q +LGH  ++TT+IYT+V+S+     ++E+ 
Sbjct: 229 VDPAAVSPHVLRHAFATHLLEGGADLRALQLMLGHADIATTEIYTHVDSRR----LVELV 284

Query: 315 DQTHP 319
           ++ HP
Sbjct: 285 NRRHP 289


>gi|297182869|gb|ADI19020.1| site-specific recombinase xerd [uncultured alpha proteobacterium
           HF0070_05I22]
          Length = 314

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 147/312 (47%), Gaps = 24/312 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYE---CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +L  L   R +S  TL +Y     DT Q L           +  T+   +  ++R  IS 
Sbjct: 19  FLDALVAMRAVSANTLAAYRRDLADTSQLL---------HASKTTLTDCNADDLRQVISL 69

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + +  RS+ R LS ++ F+ +    +I T++    + N      LP++L+E + + L
Sbjct: 70  WHQRGLSARSVARRLSALRQFMGWAVDDQIRTDNPCRWIDNPSLPALLPKSLSEDEVMKL 129

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +       + +   +  R  A+L +LY  GLR+SE + L          ++ + GKG + 
Sbjct: 130 LAAA---NAMQPPALSCRAVAMLEILYATGLRVSELVHLQVSQFRRQPDSILVAGKGGRE 186

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL- 256
           R+VPL  + ++A  ++ +L        +   +F G+        + +    QL + + + 
Sbjct: 187 RLVPLGLAAKRAAADWLELRDATFGYLLSDYMFPGVSSTAAGGAMTRHEFAQLLKTIAVA 246

Query: 257 ----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
               P   T H +RHSFATH+L+ G DLRS+Q++LGH  ++TTQIYT+       D +  
Sbjct: 247 AQIDPRRVTPHKIRHSFATHMLNRGADLRSLQNMLGHADIATTQIYTSSRP----DRLAG 302

Query: 313 IYDQTHPSITQK 324
           +    HP  +++
Sbjct: 303 LVADAHPLASKR 314


>gi|326572966|gb|EGE22945.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis CO72]
          Length = 331

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 97/309 (31%), Positives = 146/309 (47%), Gaps = 26/309 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +W   L ++   SK T+ +Y+    QF  FL             R+   T  R F ++  
Sbjct: 29  SWCDELRLQ-NYSKHTITTYQTALIQFFNFLESDNYLGGDPLACRRQDLT--RFFSTRLE 85

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +KI   S K SLS I+ F ++L K+ +      +N     K  S PR L       L+ 
Sbjct: 86  EEKIKPISAKLSLSAIRIFYQFLIKQGVIA----VNPTTGYKIKSAPRKLPTVADELLIK 141

Query: 140 NVLLHTSHETK-----WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
            +L   + E       WI  R+ A+  L+Y  GLR+SE   L   ++  D   +R+ GKG
Sbjct: 142 QLLDQKTPEDTAKAYLWI--RDKAMFELMYSSGLRLSELAGLNMGDVNFDIGIVRVLGKG 199

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +K R VP+    +KA++   D  P   NL    N +        G  L+    Q  ++  
Sbjct: 200 NKTRQVPV---GKKAMIALQDYLPHR-NLWQKKNCKALFISERHGTRLSTRAIQLRLKVC 255

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+ L+   H LRH FA+H+LS+ GDLR+IQ +LGH  +STTQIYT+V+       +
Sbjct: 256 ATMAGIELNMYPHLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHVDFGA----L 311

Query: 311 MEIYDQTHP 319
            ++YD  HP
Sbjct: 312 TKVYDHAHP 320


>gi|213616311|ref|ZP_03372137.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 267

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 133/253 (52%), Gaps = 13/253 (5%)

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +++  +++R        S  R LS ++ F ++L + K   +     + + K    LP+ L
Sbjct: 23  DLQTLLAERVEGGYKATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDL 82

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +E Q   L+   L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R
Sbjct: 83  SEAQVERLLQAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVR 137

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYI 247
           + GKG+K R+VPL       +  Y +   P+ LN ++I + LF   R + +    F   I
Sbjct: 138 VIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRI 196

Query: 248 RQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +      G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++  
Sbjct: 197 KHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER- 255

Query: 307 GDWMMEIYDQTHP 319
              + +++ Q HP
Sbjct: 256 ---LRQLHQQHHP 265


>gi|167893119|ref|ZP_02480521.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           7894]
 gi|167917844|ref|ZP_02504935.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           BCC215]
 gi|237811111|ref|YP_002895562.1| tyrosine recombinase XerD [Burkholderia pseudomallei MSHR346]
 gi|254296371|ref|ZP_04963828.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e]
 gi|157805883|gb|EDO83053.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e]
 gi|237504621|gb|ACQ96939.1| tyrosine recombinase XerD [Burkholderia pseudomallei MSHR346]
          Length = 333

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/277 (31%), Positives = 137/277 (49%), Gaps = 15/277 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +E GLS+ TL +Y  D + F  +LA       ++    + + TE   +I+ R   K    
Sbjct: 54  LEHGLSRNTLDAYRRDLQLFAQWLA--ARYAASVDHASEPTLTE---YIAARSDGKA--T 106

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R LS  + +  +  +         L + + K++   P  L+E Q    V+ +L    
Sbjct: 107 SSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQ----VEALLAAPD 162

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
            +T  +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+VP    V
Sbjct: 163 VDTP-LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPF-GEV 220

Query: 207 RKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
               +E Y  D  P  L       LF   RG  +    F   I++  +   + +  + HT
Sbjct: 221 AHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHT 280

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 281 LRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 317


>gi|300773739|ref|ZP_07083608.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300759910|gb|EFK56737.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 293

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 154/309 (49%), Gaps = 27/309 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +Q +L  L  E+  S  T+++Y   T +  IF  F  ++ I  +   +  +  IR ++S 
Sbjct: 3   QQRFLNFLRFEKRYSNHTIEAY---THELTIFFTFLQDQGIPEE---EADHRVIRFYLSH 56

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S+ RS+S ++++ K+L++  +T ++ +  ++ LK    LP  + + + + L
Sbjct: 57  LMEEGRQATSVNRSISALRTYYKFLQRESLTDQNPLTLIKALKTPKKLPSVMEKDKMVGL 116

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D +         + D R+  +L LL+G G+R++E L +   +I      + I GK +K 
Sbjct: 117 LDQM---EGAVDSFTDERDYLVLELLFGTGIRLTELLQIKITDIDFYNKNILILGKRNKE 173

Query: 198 RIVPL---LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           R+VP+   L    K  ++  D    D   N    L     GK   P +  R +    RYL
Sbjct: 174 RLVPVNHTLLEKLKIYIQQLDNQKID---NKTAFLIVTKEGKQAYPKMIYRIVH---RYL 227

Query: 255 GLPLST----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            L +ST    + H LRH+FAT LL NG DL +I+ +LGH  L+ TQ+YT+    N  + +
Sbjct: 228 SL-ISTQRKKSPHVLRHTFATALLDNGADLNAIKELLGHAGLAATQVYTH----NSVERL 282

Query: 311 MEIYDQTHP 319
             +Y Q HP
Sbjct: 283 KSVYKQAHP 291


>gi|284045117|ref|YP_003395457.1| integrase [Conexibacter woesei DSM 14684]
 gi|283949338|gb|ADB52082.1| integrase family protein [Conexibacter woesei DSM 14684]
          Length = 313

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 133/295 (45%), Gaps = 19/295 (6%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RG ++ T  +Y  D  QF+ +   +      +          +R + +          ++
Sbjct: 32  RGAAEKTRHAYAVDGGQFVRWADAHRLAPADVNP------RALRRYAAGLTEAGQAPTTV 85

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R L+ ++S  + L +     ++    +   +K+  LP  L   +   L+D +   T+  
Sbjct: 86  GRKLASLRSLFRTLVEHGELQQNPADLLSAPRKAQRLPYVLKPVEVAALLDRIPADTA-- 143

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
              +  R+ A+  L Y  GLR  E + L   +I  D   +R++GKG K RIVP      K
Sbjct: 144 ---LALRDRALFELAYASGLRAEELVMLDVGSIEFDGERVRVEGKGAKTRIVPAGEPALK 200

Query: 209 AILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR-QLRRYLGLPLS--TTAHT 264
           AI  Y D   P          LF    G+ L+    +R +R   R+  G+  +   + H 
Sbjct: 201 AIARYLDRARPALATAESDGALFLSKSGRRLSTSDVRRRLRVWARQAAGVSTAGGVSPHA 260

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           LRHSFATHLL NG DLRSIQ +LGH  +STTQ+YT V S      +   Y  +HP
Sbjct: 261 LRHSFATHLLENGADLRSIQELLGHASISTTQVYTRVESAR----LRSAYANSHP 311


>gi|229527130|ref|ZP_04416524.1| tyrosine recombinase XerC [Vibrio cholerae 12129(1)]
 gi|229335361|gb|EEO00844.1| tyrosine recombinase XerC [Vibrio cholerae 12129(1)]
          Length = 311

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 154/304 (50%), Gaps = 16/304 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  E+GLS  T ++Y+        +L      ++ +    QL    +R  + + + Q + 
Sbjct: 24  LHTEKGLSLYTQRNYKQQLETMTQYLV-----QVGLTHWTQLDSAWVRQLVMQGKRQGMK 78

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S+   LS ++SFL +L  R     +    +   +K  +LP+ L+  +   L++     
Sbjct: 79  ASSIATRLSSLRSFLDFLILRGELEANPAKGVSAPRKQRTLPKNLDVDEMAQLLEVT--- 135

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
              +   +  R+ AI+ L+YG GLR++E +S+  +++   +  +R+ GKG+K R V    
Sbjct: 136 ---DDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVWFAG 192

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             ++ + ++  L    L  + +  LF    G  ++    Q+ + +  +   +    + H 
Sbjct: 193 QAQEWVGKWLKLRS-QLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPHK 251

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ ++    + ++YDQ HP   +K
Sbjct: 252 LRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQH----LAQVYDQAHPRARKK 307

Query: 325 DKKN 328
           +K +
Sbjct: 308 NKDD 311


>gi|330836614|ref|YP_004411255.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374]
 gi|329748517|gb|AEC01873.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374]
          Length = 310

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 168/334 (50%), Gaps = 42/334 (12%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++ ++ +E  ++++N+   +GLS  T ++Y  D   F  FL     EK +I ++  +S +
Sbjct: 1   MNHQVFEEYCDYIRNV---KGLSAHTEKAYRHDLFVFGEFL-----EKFSI-SVHDVSPS 51

Query: 70  EIRAFIS--KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK-SNSLP 126
           +IR+F+     R +     +++R  S I  F  Y+ +R    E N + + +L+  S  LP
Sbjct: 52  DIRSFLVWLPERRKDFSPGTVQRLKSTINGFYTYVVRRG-KIEKNPVALISLRSASRRLP 110

Query: 127 RALNEKQALTLVDNVLLHTSHETKWID---ARNSAILYLLYGCGLRISEALSLTPQNIMD 183
             L + +   L++           W D    R+  IL LLY  G R SE L++   ++  
Sbjct: 111 TVLEKSETERLLN---------LPWNDFSSLRDVLILNLLYSTGCRRSELLAIDVDDLET 161

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD--------LCPFD---LNLNIQLPLFRG 232
            Q  + I GKG + R V L P V K + +Y          L P +    + N  L L  G
Sbjct: 162 GQERILIHGKGGRERYVFLTPRVTKLLGKYLSERKELLSRLEPAEKEGADWNALL-LSNG 220

Query: 233 IR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
            R GK L+ G+      + +R L +  + T H LRH+FATHLL N   +R++Q +LGH  
Sbjct: 221 RRKGKRLSTGIITSIFGKYKRELEIHKAFTPHVLRHTFATHLLDNDAGIRTVQELLGHVN 280

Query: 292 LSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           LSTTQIYT+V+++     + ++YD  HP   +K+
Sbjct: 281 LSTTQIYTHVSAER----LRKVYDACHPHGRKKE 310


>gi|254181547|ref|ZP_04888144.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1655]
 gi|254298194|ref|ZP_04965646.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e]
 gi|157808367|gb|EDO85537.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e]
 gi|184212085|gb|EDU09128.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1655]
          Length = 329

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/277 (31%), Positives = 137/277 (49%), Gaps = 15/277 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +E GLS+ TL +Y  D + F  +LA       ++    + + TE   +I+ R   K    
Sbjct: 50  LEHGLSRNTLDAYRRDLQLFAQWLA--ARYAASVDHASEPTLTE---YIAARSDGKA--T 102

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R LS  + +  +  +         L + + K++   P  L+E Q    V+ +L    
Sbjct: 103 SSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQ----VEALLAAPD 158

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
            +T  +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+VP    V
Sbjct: 159 VDTP-LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPF-GEV 216

Query: 207 RKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
               +E Y  D  P  L       LF   RG  +    F   I++  +   + +  + HT
Sbjct: 217 AHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHT 276

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 277 LRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 313


>gi|316985480|gb|EFV64427.1| tyrosine recombinase XerC [Neisseria meningitidis H44/76]
          Length = 329

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 124/244 (50%), Gaps = 11/244 (4%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +G+R+L R LS  + +  +L KR +       +++  K+   +P+AL ++    ++D  +
Sbjct: 97  LGERTLARKLSSWRQYCVWLVKRGLMHADPTADIKPPKQPERVPKALPQEWLNRMLDLPV 156

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
                    +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GKG K R VPL
Sbjct: 157 ----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVIGKGRKQRQVPL 212

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           +    +A+  Y    P     +    LF G  G  L+    Q+ + Q     G     + 
Sbjct: 213 VGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 269

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +YD+ HP   
Sbjct: 270 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAHPRAK 325

Query: 323 QKDK 326
           ++D+
Sbjct: 326 RQDE 329


>gi|167569023|ref|ZP_02361897.1| site-specific tyrosine recombinase XerD [Burkholderia oklahomensis
           C6786]
          Length = 325

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/277 (30%), Positives = 132/277 (47%), Gaps = 15/277 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +E GLS+ TL +Y  D + F  +LA    E +       L+      +I+ R   K    
Sbjct: 46  LEHGLSRNTLDAYRRDLQLFAQWLAAQHAENVDHANEAMLT-----GYIAARSDGKA--T 98

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R LS  + +  +  +         L + + K++   P  L+E Q   L+    + T 
Sbjct: 99  SSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTP 158

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+VP    V
Sbjct: 159 -----LGLRDRTMLELMYASGLRVSELVTLKSVEVGLNEGVVRVTGKGSKERLVPF-GEV 212

Query: 207 RKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
               +E Y  D  P  L       LF   RG  +    F   I++  +   +    + HT
Sbjct: 213 AHGWIERYLRDGRPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHT 272

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 273 LRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 309


>gi|229525024|ref|ZP_04414429.1| tyrosine recombinase XerC [Vibrio cholerae bv. albensis VL426]
 gi|229338605|gb|EEO03622.1| tyrosine recombinase XerC [Vibrio cholerae bv. albensis VL426]
          Length = 311

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 154/304 (50%), Gaps = 16/304 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  E+GLS  T ++Y+        +L      ++ +    QL    +R  + + + Q + 
Sbjct: 24  LHTEKGLSLYTQRNYKQQLETMTQYLV-----QVGLTHWTQLDAAWVRQLVMQGKRQGMK 78

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S+   LS ++SFL +L  R     +    +   +K  +LP+ L+  +   L++     
Sbjct: 79  ASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVDEMAQLLEVT--- 135

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
              +   +  R+ AI+ L+YG GLR++E +S+  +++   +  +R+ GKG+K R V    
Sbjct: 136 ---DDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVWFAG 192

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             ++ + ++  L    L  + +  LF    G  ++    Q+ + +  +   +    + H 
Sbjct: 193 QAQEWVGKWLKLRS-QLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPHK 251

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ ++    + ++YDQ HP   +K
Sbjct: 252 LRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQH----LAQVYDQAHPRARKK 307

Query: 325 DKKN 328
           +K +
Sbjct: 308 NKDD 311


>gi|217964580|ref|YP_002350258.1| tyrosine recombinase XerC [Listeria monocytogenes HCC23]
 gi|254799346|sp|B8DG54|XERC_LISMH RecName: Full=Tyrosine recombinase xerC
 gi|217333850|gb|ACK39644.1| tyrosine recombinase XerC [Listeria monocytogenes HCC23]
 gi|307570856|emb|CAR84035.1| tyrosine integrase/recombinase [Listeria monocytogenes L99]
          Length = 300

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 146/309 (47%), Gaps = 21/309 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q +L  L  ER  S  T  +YE D   F  FL      +  I+T +Q+++ ++R ++
Sbjct: 6   KLEQQFLDYLHSERNYSVNTSTAYENDLLDFRRFL-----NEQAIETYQQVTFLDVRIYL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++ + +     ++ R +S ++SF  +L +  +  E+    + + K    LP+    ++  
Sbjct: 61  TELKQKSFSRTTVARKISSLRSFYTFLLRENVIAENPFTYVSHAKNQLRLPKFFYSEEME 120

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L   V      + + +  R+  +L +LYG G+R+SE   +   ++      + I+GKG+
Sbjct: 121 ALFQVVY----EDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGN 176

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVFQRYIRQL 250
           K R VP       AI +Y    P    L  +       L     G PL     +  + ++
Sbjct: 177 KERYVPFGVYAEDAITDY---LPKRTELMTRYKKSHDALLVNHYGDPLTTRGIRYCLTKI 233

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                L      H LRH+FAT LL+NG D+R++Q +LGH  L++TQIYT+V  ++    +
Sbjct: 234 ISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLASTQIYTHVTKEH----L 289

Query: 311 MEIYDQTHP 319
              Y + HP
Sbjct: 290 KSTYMKHHP 298


>gi|34222761|sp|O31087|XERC_SERMA RecName: Full=Tyrosine recombinase xerC
 gi|2625019|gb|AAC46276.1| site specific recombinase [Serratia marcescens]
          Length = 303

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 150/300 (50%), Gaps = 21/300 (7%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L++ER LS LT  SY   +RQ    +    E  +T  T   L    +R   ++ +  
Sbjct: 16  LRYLKVERQLSPLTQLSY---SRQLTALMRLAQEIGVTDWTT--LDAARVRMLAARSKRA 70

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +   SL   LS ++SFL +L  + +   +    +R  +    LP+ ++  +   L++  
Sbjct: 71  GLQSASLALRLSSLRSFLDWLVSQGVLHANPAKGIRTPRSGRHLPKNIDVDEMNQLLEID 130

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           L         +  R+ A+L ++YG GLR+SE + L  +++      + + GKG K R +P
Sbjct: 131 L------NDPLAVRDRAMLEVMYGAGLRLSELVGLDCRHVDMAAGEVWVMGKGSKERKLP 184

Query: 202 LLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +    R A+  LE++ L   DL       +F   +G+ ++    Q+   +     G+   
Sbjct: 185 I---GRTAVTWLEHW-LAMRDLFGPQDDAMFLSNQGRRISTRNVQKRFAEWGVKQGVNSH 240

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRHSFATH+L + GDLR++Q +LGH  L+TTQIYT+++ ++    +  +YD  HP
Sbjct: 241 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----LANVYDAAHP 296


>gi|325129523|gb|EGC52350.1| tyrosine recombinase XerC [Neisseria meningitidis OX99.30304]
 gi|325135646|gb|EGC58263.1| tyrosine recombinase XerC [Neisseria meningitidis M0579]
          Length = 305

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 146/306 (47%), Gaps = 13/306 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+N+ +  G S+ T+ +Y  D  +    LA    E       + LS  +  A + +   
Sbjct: 13  YLENI-VREGKSEHTVAAYRRDLEELFALLAQMPSEDAG-GVPQDLSRRDFTAALRRLSQ 70

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  R+L R LS  + +  +L +R +       +++  K+   +P+AL ++    ++D 
Sbjct: 71  RGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEWLNRMLDL 130

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GKG K R V
Sbjct: 131 PV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQV 186

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
            L     +A+  Y    P     +    LF G  G  L+    Q+ + Q     G     
Sbjct: 187 SLTGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHV 243

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +YD+ HP 
Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAHPR 299

Query: 321 ITQKDK 326
             ++D+
Sbjct: 300 AKRQDE 305


>gi|189502574|ref|YP_001958291.1| hypothetical protein Aasi_1239 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189498015|gb|ACE06562.1| hypothetical protein Aasi_1239 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 299

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 155/312 (49%), Gaps = 33/312 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF--YTEEKITIQTIRQLSYTEIRAFIS 76
           Q +  +L++ER L++ ++ +Y  D R+   F+         +T+QT      T +R F+ 
Sbjct: 8   QQFEIHLQLERSLAENSILAYGSDLRKLCQFIELRQLGLSPLTLQT------THLRDFLM 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                 IG  S  R LS I+ F ++L  +  + T+   L  R +     LP  L+  +  
Sbjct: 62  YLYELGIGATSQARILSAIRGFYQFLLLEGYLETDPTKLVERPVL-GRKLPHTLSVHEI- 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
                +L  T   +  +  RN A+L  LY  GLR+SE +SL   +I  ++  L++ GKG+
Sbjct: 120 ----EILFGTIDHSTAMGMRNRAMLETLYSSGLRVSELISLRMSDIYFEEMFLQVLGKGN 175

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL--------FRGIRGKPLNPGVFQRYI 247
           K R+VP    + K  L+Y  +  +   + I  P+        F   RG  ++  +    I
Sbjct: 176 KQRLVP----IGKIALKYLRI--YIEEVRIHFPIKKEAANCVFLNKRGSKMSRVMVFLII 229

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++L    GL    + HT RHSFATHL+  G DLR++Q++LGH  ++TT+IYT+++     
Sbjct: 230 KELASKAGLQQEISPHTFRHSFATHLVEGGADLRAVQAMLGHESITTTEIYTHLDR---- 285

Query: 308 DWMMEIYDQTHP 319
            ++ +   + HP
Sbjct: 286 SYLQQTIHEFHP 297


>gi|157368433|ref|YP_001476422.1| site-specific tyrosine recombinase XerC [Serratia proteamaculans
           568]
 gi|157320197|gb|ABV39294.1| tyrosine recombinase XerC [Serratia proteamaculans 568]
          Length = 303

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 152/300 (50%), Gaps = 21/300 (7%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L++ER LS LT  SY   +RQ    +A   E  +T   +  L   ++R   ++ +  
Sbjct: 16  LRYLKVERQLSPLTQLSY---SRQLQALMALAQEIGVTEWPL--LDAAKVRQLAARSKRA 70

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +   SL   LS ++SFL +   + +   +    +R  +    LP+ ++  +   L+ N+
Sbjct: 71  GLQSSSLALRLSALRSFLDWQVSQGMLIANPAKGIRTPRSGRHLPKNIDVDEMNQLL-NI 129

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
            L+       +  R+ A+L ++YG GLR+SE + L  +++      + + GKG K R   
Sbjct: 130 DLNDP-----LAVRDRAMLEVMYGAGLRLSELVGLDCRHVDLAAGEIWVLGKGSKERK-- 182

Query: 202 LLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
            LP  R A+  LE++ L   DL       +F   +GK ++    Q+   +     G+   
Sbjct: 183 -LPVGRTAVTWLEHW-LAMRDLFGPSDDAMFLSNQGKRISTRNVQKRFAEWGVKQGVNSH 240

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRHSFATH+L + GDLR++Q +LGH  L+TTQIYT+++ ++    +  +YD  HP
Sbjct: 241 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----LANVYDAAHP 296


>gi|260774849|ref|ZP_05883751.1| tyrosine recombinase XerC [Vibrio coralliilyticus ATCC BAA-450]
 gi|260609274|gb|EEX35429.1| tyrosine recombinase XerC [Vibrio coralliilyticus ATCC BAA-450]
          Length = 309

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 151/304 (49%), Gaps = 22/304 (7%)

Query: 25  LEIERGLSKLTLQSYECDTR---QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L  E+GLS  T ++Y+       Q L+ +      ++    +RQL+        SK    
Sbjct: 23  LRSEKGLSLHTQRNYKQQLETMAQHLVTMGLKDWSQVDAAWVRQLA--------SKGMRD 74

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +   SL   LS ++SF  +L  R   T +    +   +K   LP+ L+  +   L++  
Sbjct: 75  GMKASSLATRLSALRSFFDFLILRGELTANPAKGVSAPRKKRPLPKNLDVDEVGQLLE-- 132

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
                +E   +  R+ A++ L+YG GLR++E +S+  +++      +R+ GKGDK R VP
Sbjct: 133 ----VNEDDPLAIRDRAMMELMYGAGLRLAEMVSVDVRDVSLSSGEIRVVGKGDKERKVP 188

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
                 + + ++  +     N + +  LF    G  ++    Q+ + +  +   +    +
Sbjct: 189 FAGMAEEWVAKWLKVRGALANTD-EPALFVSKLGVRISHRNVQKRMAEWGQKQSVASHIS 247

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ ++    + ++YDQ HP  
Sbjct: 248 PHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQH----LADVYDQAHPRA 303

Query: 322 TQKD 325
            +K+
Sbjct: 304 KKKE 307


>gi|85060322|ref|YP_456024.1| site-specific tyrosine recombinase XerC [Sodalis glossinidius str.
           'morsitans']
 gi|84780842|dbj|BAE75619.1| phage integrase [Sodalis glossinidius str. 'morsitans']
          Length = 303

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 149/303 (49%), Gaps = 25/303 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +E  LS  T +SY+   RQ    +    E  +T    RQL  +++RA  ++ + 
Sbjct: 15  FLHYLRVELQLSAKTRESYQ---RQLYTVIVLIDEMGLT--EWRQLEVSQVRALAARSKR 69

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q +   SL   LS ++SFL +L        +    +   +    LP+ ++  +    VD+
Sbjct: 70  QGLQSASLALRLSALRSFLDWLVSTDALGANPARGVSAPRHGRHLPKNMDVDE----VDH 125

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +L   + +   +  R+ A+L ++YG GLR++E + L   ++      +R+ GKG+K R +
Sbjct: 126 LLDIDTRDP--LALRDRAMLEVMYGAGLRLAELVGLNCADVDLGGGEVRVVGKGNKERKL 183

Query: 201 PLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           P+  +    +  +  L     P D        +F    G+ ++    Q+   +     G+
Sbjct: 184 PIGATAVTWLTRWLTLRDRYAPKDD------AVFIANSGRRISARNVQKRFAEWGVKQGV 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRHSFATH+L + G+LR++Q +LGH  LSTTQIYT+++ ++    +  +YD 
Sbjct: 238 NSHIHPHKLRHSFATHMLESSGNLRAVQELLGHANLSTTQIYTHLDFQH----LASVYDA 293

Query: 317 THP 319
            HP
Sbjct: 294 AHP 296


>gi|208779508|ref|ZP_03246853.1| phage integrase family protein [Francisella novicida FTG]
 gi|208744469|gb|EDZ90768.1| phage integrase family protein [Francisella novicida FTG]
          Length = 292

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 160/322 (49%), Gaps = 45/322 (13%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+   N+L NL   +  S+ T+ +Y+ D  Q          + ++ + I  L++++I  +
Sbjct: 4   LEHINNFLDNLLYLKNYSQETINNYQRDLLQL--------NQALSDKNIISLTHSDILIW 55

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I K   Q    ++L+R LS ++SF  +L   +I +++    ++  K S  LP+ +N  + 
Sbjct: 56  IKKLHAQGNSPKTLQRKLSSVRSFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDEL 115

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D   ++ S++   I+AR+ A   LLY CG+R+SE  S+  + I   Q  +R+ GKG
Sbjct: 116 AYLLD---VNPSND---IEARDIACFDLLYSCGIRLSELSSVELKYISISQKNIRVTGKG 169

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----------LFRGIRGKPLNPGVF 243
           +K RIV            Y+       NLN  L            LF    GK L     
Sbjct: 170 NKQRIV------------YFGTKTLS-NLNRWLKIRDSLKPSSDYLFISRDGKHLTNRSI 216

Query: 244 QRYIRQL-RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           Q+ +    ++Y    +    H LRHSFA+H+L +  DL +++ +LGH  +S+TQIYT++N
Sbjct: 217 QKRLEIFAQKYASRHIH--PHMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLN 274

Query: 303 SKNGGDWMMEIYDQTHPSITQK 324
            +     +  ++D+ HP   +K
Sbjct: 275 FQQ----LASVFDKAHPRAKKK 292


>gi|121728305|ref|ZP_01681336.1| tyrosine recombinase XerC [Vibrio cholerae V52]
 gi|153214849|ref|ZP_01949657.1| tyrosine recombinase XerC [Vibrio cholerae 1587]
 gi|153826279|ref|ZP_01978946.1| tyrosine recombinase XerC [Vibrio cholerae MZO-2]
 gi|254226604|ref|ZP_04920185.1| tyrosine recombinase XerC [Vibrio cholerae V51]
 gi|254291937|ref|ZP_04962718.1| tyrosine recombinase XerC [Vibrio cholerae AM-19226]
 gi|297581831|ref|ZP_06943752.1| tyrosine recombinase XerC [Vibrio cholerae RC385]
 gi|121629435|gb|EAX61864.1| tyrosine recombinase XerC [Vibrio cholerae V52]
 gi|124115092|gb|EAY33912.1| tyrosine recombinase XerC [Vibrio cholerae 1587]
 gi|125620876|gb|EAZ49229.1| tyrosine recombinase XerC [Vibrio cholerae V51]
 gi|149739947|gb|EDM54126.1| tyrosine recombinase XerC [Vibrio cholerae MZO-2]
 gi|150422147|gb|EDN14113.1| tyrosine recombinase XerC [Vibrio cholerae AM-19226]
 gi|297533925|gb|EFH72765.1| tyrosine recombinase XerC [Vibrio cholerae RC385]
          Length = 311

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 154/304 (50%), Gaps = 16/304 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  E+GLS  T ++Y+        +L      ++ +    QL    +R  + + + Q + 
Sbjct: 24  LHTEKGLSLYTQRNYKQQLETMTQYLV-----QVGLTHWTQLDSAWVRQLVMQGKRQGMK 78

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S+   LS ++SFL +L  R     +    +   +K  +LP+ L+  +   L++     
Sbjct: 79  ASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVDEMAQLLEVT--- 135

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
              +   +  R+ AI+ L+YG GLR++E +S+  +++   +  +R+ GKG+K R V    
Sbjct: 136 ---DDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVWFAG 192

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             ++ + ++  L    L  + +  LF    G  ++    Q+ + +  +   +    + H 
Sbjct: 193 QAQEWVGKWLKLRS-QLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPHK 251

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ ++    + ++YDQ HP   +K
Sbjct: 252 LRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQH----LAQVYDQAHPRARKK 307

Query: 325 DKKN 328
           +K +
Sbjct: 308 NKDD 311


>gi|261879004|ref|ZP_06005431.1| integrase/recombinase XerD [Prevotella bergensis DSM 17361]
 gi|270334388|gb|EFA45174.1| integrase/recombinase XerD [Prevotella bergensis DSM 17361]
          Length = 306

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 148/292 (50%), Gaps = 24/292 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +++ L+++R  S  TL +Y+ D  + L FL      K+ +     +   +++ F +  
Sbjct: 11  KRYIRYLKLQRSYSPNTLDAYQRDLNKLLDFL-----RKVDVAPF-DVKLEDLQQFAASL 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALNEKQALT 136
               IG +S  R LSG+++F ++L          + +L   +L K   LP  L   +   
Sbjct: 65  HEHGIGSKSQARILSGVRAFYRFLVLDGYLEVDPTELLESPHLPKH--LPEYLTTDEVDM 122

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L D++ L T+        RN AI+ +L+ CGLR+SE  +L   ++  ++  +R+ GKG+K
Sbjct: 123 LQDSIDLSTNE-----GHRNRAIIEVLFSCGLRVSELTNLKLSDLFLEEQFIRVMGKGNK 177

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLR 251
            R+VP+     + +  ++D    D    I  P     +F   RG  L   +    I++  
Sbjct: 178 ERLVPISDRAIEELGYWFD----DRRQMIIKPGEEDYVFLNRRGHHLTRTMILIMIKRQA 233

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              G+  + + HTLRHSFAT LL  G DLR IQ +LGH  + TT++YT++++
Sbjct: 234 EAAGIKKTISPHTLRHSFATALLRGGADLRVIQDLLGHSNIGTTEMYTHLDN 285


>gi|258511365|ref|YP_003184799.1| integrase family protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478091|gb|ACV58410.1| integrase family protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 307

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 140/290 (48%), Gaps = 19/290 (6%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
            S  T++SY  D   F  +L     +   +  +  LS  ++R   S    +     S+ R
Sbjct: 20  FSPRTVRSYGQDLEAFRQWL-----DDRGVYDLDALSTRDVRMHASDLLAKGAAKSSVAR 74

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            LS +++FL++  +R    +    N+R  K+   LPR L+E++   L+D+V         
Sbjct: 75  RLSCLRTFLRFCAERGWVRQVMAKNVRLPKRDRRLPRYLHEEEVAALIDHV-----GGDD 129

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
           ++  R+ A+L  LY  G+R+SE + L   ++       R+ GKG + R V +    R+A+
Sbjct: 130 FVALRDRALLEFLYATGVRVSECVHLDIGDLDLSAGFARVLGKGGRERYVMV---GRRAV 186

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYLGLPLSTTAHTLRHSF 269
                  P    +     +F   RG  L     +R + R+++   GL  S   H LRHSF
Sbjct: 187 DALRRYLPLRDRMARCSAVFINRRGGRLTDRSVRRVLERRIQEVPGLR-SIHVHGLRHSF 245

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           ATH+L+ G DLRS+Q +LGH  LS+TQIYT+ + +     +   Y   HP
Sbjct: 246 ATHMLNGGADLRSVQELLGHASLSSTQIYTHTSREQ----LARAYYAAHP 291


>gi|119899508|ref|YP_934721.1| integrase/recombinase [Azoarcus sp. BH72]
 gi|119671921|emb|CAL95835.1| integrase/recombinase [Azoarcus sp. BH72]
          Length = 305

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 151/314 (48%), Gaps = 22/314 (7%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S E   E   +   L +E GL+  T+  Y  D  QF  +LA    + I      +   +
Sbjct: 8   LSAETRAELDLFCDALWLEFGLAANTIAGYRSDLAQFGAWLASRGTQLI------EADES 61

Query: 70  EIRAFISK--RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
           ++ A++++  RR +    R L   +S  + F + L  ++   +   + +         PR
Sbjct: 62  QLTAYLAEFSRRAKPASQRRL---MSAWRRFYRGLLGQRRIAQDPTVQLDAPVTGERFPR 118

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L+E Q  +L+    + T H       R+ ++L LLY  GLR+SE + L    I   +  
Sbjct: 119 TLSEAQVESLLAAPDVDTIH-----GLRDRSMLELLYASGLRVSELVELKLFAISTGEGV 173

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           +R+ GKG K R+VP      + +  Y  +  P  L       +F   RG  +   +F R 
Sbjct: 174 IRVFGKGSKERLVPTGDIALEWLGRYLREARPALLRGRTCDEVFVSQRGAGMTRQMFWRI 233

Query: 247 IRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           I+Q     G+P    + HTLRH+FATHL+++G DLR +Q +LGH  +STTQIYT+V  + 
Sbjct: 234 IKQYAPKAGIPAQRISPHTLRHAFATHLINHGADLRVVQLLLGHADISTTQIYTHVARER 293

Query: 306 GGDWMMEIYDQTHP 319
               + +++ + HP
Sbjct: 294 ----LKQLHARHHP 303


>gi|228470279|ref|ZP_04055183.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Porphyromonas uenonis 60-3]
 gi|228308022|gb|EEK16897.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Porphyromonas uenonis 60-3]
          Length = 403

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 146/292 (50%), Gaps = 12/292 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFL-IFLAFYTEEKITIQTIRQLSYTEI 71
           EL +    +++ L +ER  S LTL +Y      ++   L   T+E       R L    +
Sbjct: 5   ELEQTLDAFMEYLRLERNASPLTLTTYRPAIESYMESALELATDEWRPSDADRDL----V 60

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           R +I ++   ++   ++ ++LS ++SF KYL+ R   T +    ++  K+ ++LP  L +
Sbjct: 61  RNWIMQQMDDELSSTTVNKNLSAVRSFYKYLQLRGHVTSNPTRYLKGPKREHTLPSFLTQ 120

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            Q    +  + + T +   ++  R+  I+  +Y  GLR +E  SL  Q +     +LR+ 
Sbjct: 121 AQIEEALATIPIETDN---FLSVRDRLIIETIYQTGLRRAEVASLKTQQVDLTAMSLRVV 177

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG-VFQRYIRQL 250
           GKG K RIVP    +R+ + +Y  L   D  +      F  +  +PL+   V+Q   + L
Sbjct: 178 GKGRKERIVPFGTDLREKMQDYITLR--DQKVGTSQYFFVTLECRPLSGADVYQVVHKAL 235

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               GLP    AHTLRHSFAT +L+ G  + SI+ +LGH  L TT  YT+ +
Sbjct: 236 SVVPGLP-RRGAHTLRHSFATEMLNAGAPITSIKELLGHSNLETTTRYTHTS 286


>gi|323342009|ref|ZP_08082242.1| integrase/recombinase XerD [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464434|gb|EFY09627.1| integrase/recombinase XerD [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 304

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 135/275 (49%), Gaps = 16/275 (5%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           + LT+ SY  D  Q++ +L     E  ++ ++  +    IR +I   +       +++  
Sbjct: 19  AALTVASYRNDLNQYIEYL-----EHESVSSLESVDAEVIRKYIDDIKNDYAAS-TIQHK 72

Query: 92  LSGIKSFLKYL--KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           +  I+ F +YL    +     +  ++++N  K   LP  +++     L       +    
Sbjct: 73  IVVIRQFHQYLLNSGQLQHDPTAFVSLKN--KGTRLPTIVSDDTIRKLF------SFDRV 124

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              D  + AIL LLY CGLR+SE + L    +  DQ  LRI GKG+K R++PL       
Sbjct: 125 TGKDFMDYAILLLLYRCGLRVSECVHLEFSQVYLDQKWLRILGKGNKERMIPLSIDAIDG 184

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           + EY ++      +     +F   +GK ++       I+   + +G+    +AHTLRHSF
Sbjct: 185 LSEYINIIRPQWMIQPTEQIFINAKGKGISRQYIDSMIKSRCKEMGILTPISAHTLRHSF 244

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           AT +L  G DLR IQ +LGH  +STTQIYT+VN K
Sbjct: 245 ATAILDTGVDLRIIQELLGHQDISTTQIYTHVNKK 279


>gi|119896887|ref|YP_932100.1| site-specific recombinase [Azoarcus sp. BH72]
 gi|119669300|emb|CAL93213.1| site-specific recombinase [Azoarcus sp. BH72]
          Length = 303

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 150/307 (48%), Gaps = 20/307 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L  E + +L  L  +R  + LTL++Y  D  +         E     + +  L   +IR 
Sbjct: 12  LTDECEAYLAYLGDQRRAAPLTLENYRRDLHRL--------ERLGDGRALMTLGAADIRR 63

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+++   + +  RS+ R LS  +   ++L +R++   + +  +R  K    LPRAL+  Q
Sbjct: 64  FVARLHGEGLSGRSIARVLSCWRGLYRWLLRRRLIPANPVDGIRAPKSPRLLPRALSPDQ 123

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTLRIQG 192
           A  L+D            ++ R+ A+  L Y  GLR+SE   L     +D  +  + + G
Sbjct: 124 AQALLDPP------AEAALEVRDLAMFELFYSSGLRLSELAGLDVGGGLDPAEGMVTVLG 177

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K  K R VP+      A L+ +D     +    +  LF    G+ ++P   +  + +  R
Sbjct: 178 KRGKTRSVPVGAHA-WAALKAWDTVRAAIAPAAEPALFVTRSGRRMSPSAIRDRLARRAR 236

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            +GL +    H LRHSFA+HLL + GDLR++Q +LGH  + +TQ+YT+++ ++    +  
Sbjct: 237 SVGLGVHVHPHMLRHSFASHLLQSSGDLRAVQELLGHSSIRSTQVYTHLDFQH----LAR 292

Query: 313 IYDQTHP 319
           IYD  HP
Sbjct: 293 IYDAAHP 299


>gi|300854312|ref|YP_003779296.1| putative integrase/recombinase XerD [Clostridium ljungdahlii DSM
           13528]
 gi|300434427|gb|ADK14194.1| predicted integrase/recombinase XerD [Clostridium ljungdahlii DSM
           13528]
          Length = 292

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 151/292 (51%), Gaps = 15/292 (5%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           ++ +SK T+ +Y  D  +F  F+      K   + +  +    I A++   + +     S
Sbjct: 14  KKHMSKNTMDAYVRDITRFYNFI------KDREENLENVEVVSIMAYVQYLQKEGRAISS 67

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           + R++  +++F KYL  + +  E+ +L  +  K  + +P+ L  ++   L++   L T+ 
Sbjct: 68  IVRNIVSLRNFYKYLMLKGVLNENPVLYYQIPKVEHKVPKILTIEEVDKLLEAPNLDTNK 127

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
                  R+ A+L ++Y  G+++ E LSLT  +I    S +R +   ++ RIVP+  SV 
Sbjct: 128 -----GIRDKAMLEVMYAAGMKVMELLSLTIYDIDLKLSYVRCRSLKEEERIVPI-GSVA 181

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
              L+ Y      LN+     LF  +RG  ++   F + ++   +   +  +  A TLRH
Sbjct: 182 VKYLKNYLNIRHKLNIYNLDVLFLNLRGVQMSRQGFWKIVKYYAKEANIDKNINAFTLRH 241

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           SFA HLL NG D++S+Q +LGH  LS TQIY++V  +N    + ++Y ++HP
Sbjct: 242 SFAVHLLQNGADIKSVQELLGHKELSATQIYSSVIKRNK---IAQVYKKSHP 290


>gi|302338068|ref|YP_003803274.1| tyrosine recombinase XerD [Spirochaeta smaragdinae DSM 11293]
 gi|301635253|gb|ADK80680.1| tyrosine recombinase XerD [Spirochaeta smaragdinae DSM 11293]
          Length = 311

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/236 (32%), Positives = 124/236 (52%), Gaps = 15/236 (6%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++ + +S ++SF  +L   +   ++    +   K   SLP  L+ ++    ++ + L T 
Sbjct: 70  TIAKLVSIMRSFFDFLVSEEYRQDNPARMVDAPKLGRSLPSVLSIEEVEAFLNAIPLETP 129

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                   R+ A+  L+Y  GLR+SEA+ L+  ++      +R+ GKG K R++PL    
Sbjct: 130 E-----GLRDRALFELIYSAGLRVSEAVGLSAGSLYLRDGIIRVTGKGSKQRVIPLGDEA 184

Query: 207 RKAILEYY-DLCPF-DLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYLGLPLSTTAH 263
           RK I  Y  D  P    + +    LF   RG PL+   V++R+ +Q     G+      H
Sbjct: 185 RKWIGRYLTDARPLLAKSFHPTDALFLSRRGTPLSRKNVWKRF-KQFSLLAGV--DGKVH 241

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           TLRHSFATHLL+ G DLRS+Q +LGH  +STTQIYT+++       +   ++Q HP
Sbjct: 242 TLRHSFATHLLAGGADLRSVQELLGHSDISTTQIYTHIDDPT----LRNTHEQFHP 293


>gi|255311152|ref|ZP_05353722.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           6276]
 gi|255317453|ref|ZP_05358699.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           6276s]
          Length = 315

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/249 (33%), Positives = 122/249 (48%), Gaps = 9/249 (3%)

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           IR ++ ++       R+++R LS IKSF ++  K ++  E+ +  +R  +    LP  L 
Sbjct: 71  IRLYLLEQIQTHHSKRTVRRRLSAIKSFARFCVKNQLIPENPVEMIRGPRLPQELPSPLT 130

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            +Q L L+    L      K    R+  +L L Y  GLRISE  +L   +I      L I
Sbjct: 131 YEQVLALMAAPEL-----DKVTGFRDRCLLELFYSSGLRISEITALNRADIDFQSHLLHI 185

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +GKG K RIVP+     + + +Y +              F    GK L+     R  +Q 
Sbjct: 186 RGKGKKERIVPMTKVAVQWLQDYLNHPDRASVEQDHQACFLNRFGKRLSTRSIDRKFQQY 245

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               GL  S T HT+RH+ ATH L  G DL++IQ +LGH  L TT IYT+V+ K      
Sbjct: 246 LLKTGLSGSITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMK----LK 301

Query: 311 MEIYDQTHP 319
            +I+D+THP
Sbjct: 302 KQIHDETHP 310


>gi|126663343|ref|ZP_01734341.1| integrase [Flavobacteria bacterium BAL38]
 gi|126625001|gb|EAZ95691.1| integrase [Flavobacteria bacterium BAL38]
          Length = 295

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 147/295 (49%), Gaps = 20/295 (6%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEIRAFISKRRTQKIGD 85
           E+  S LT+++Y  D + F        +E +  Q+I   ++ Y  IR +I       I  
Sbjct: 15  EKNYSPLTVRAYLDDIQSF--------QEYLLGQSISLEEVVYPNIRNWIVTLVEHNIST 66

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            S+ R +S +KS+ K+L K K  + + +L  ++LK +  +    +EK+ L    +V    
Sbjct: 67  TSVNRKISALKSYYKFLLKVKQISVNPLLKHKSLKTAKKVQIPFSEKELL----DVFSEN 122

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
            +   +   RN  I+ L Y  G+R +E ++L   ++ + Q T+R+ GK +K RI+P+L  
Sbjct: 123 EYADDFEGIRNRFIIELFYTTGIRRAELINLNLNSVSEIQKTIRVIGKRNKERIIPVLDC 182

Query: 206 VRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
                 +Y  L    +L  + ++ L     G  ++     R I      +      + H 
Sbjct: 183 TLNLYKKYKSLRNGLELISDNEM-LILSKTGNKVSESFVYRLINDYFSTVSKKEKKSPHV 241

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           LRHSFATHLL+NG DL S++ +LGH  LS+TQIYT+    +    + ++Y + HP
Sbjct: 242 LRHSFATHLLNNGADLNSVKELLGHASLSSTQIYTH----SSLAELKKVYQEAHP 292


>gi|148258743|ref|YP_001243328.1| tyrosine recombinase XerD subunit [Bradyrhizobium sp. BTAi1]
 gi|146410916|gb|ABQ39422.1| tyrosine recombinase XerD subunit [Bradyrhizobium sp. BTAi1]
          Length = 308

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 141/303 (46%), Gaps = 38/303 (12%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  +  E+G  + TL +Y  D      FLA       T  T        +R +++   T
Sbjct: 4   FLDMMAAEQGAGQNTLDAYRRDLSDLSEFLAGKANSFTTADT------QALRDYLADLDT 57

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     S+ R LS ++   ++L    I ++     +   K+   LP+ L+    +  VD 
Sbjct: 58  RGFKSSSVARRLSAMRHLFRFLLSEHIRSDDPAAILSGPKRGRPLPKVLS----IGDVDR 113

Query: 141 VLLHTSHETKWIDA---------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           +L      T+  DA         R   +L +LY  GLR+SE ++L       D   + ++
Sbjct: 114 MLTRAKELTETADASPAQRLRALRLYCLLEVLYATGLRVSELVALPRTAARHDARMIVVR 173

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGV------- 242
           GKG+K R+VPL  + R+A+ +Y         L+   P  +     GK L P         
Sbjct: 174 GKGNKERLVPLNQASRQAMADYL------AALDALKPEKKASATFGKWLFPSFGESGHLT 227

Query: 243 ---FQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              F R +++L    GLP    + H LRH+FA+HLL NG DLR +Q++LGH  +STTQIY
Sbjct: 228 RQHFARDLKELAVASGLPARLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIY 287

Query: 299 TNV 301
           T+V
Sbjct: 288 THV 290


>gi|217975041|ref|YP_002359792.1| tyrosine recombinase XerC [Shewanella baltica OS223]
 gi|217500176|gb|ACK48369.1| tyrosine recombinase XerC [Shewanella baltica OS223]
          Length = 306

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 153/316 (48%), Gaps = 33/316 (10%)

Query: 21  WLQNLE----IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           WLQ  E     ER LS  T+++Y  +  +    L     E + +  + +  + ++   +S
Sbjct: 15  WLQTFERYLSTERQLSAHTVRNYLYELNRGSDLLP----EGVHLLNVSREHWQQV---LS 67

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           K   + +  RSL   LS +K + ++L +  +   +    +   K++  LP+ ++      
Sbjct: 68  KLHRKGLSPRSLSLCLSAVKQWGEFLLREGVIELNPAKGLSAPKQAKPLPKNIDVDAISH 127

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+D         T  +  R+ A++ L Y  GLR++E  +L   ++  D   +R+ GKG+K
Sbjct: 128 LLD------IEGTDPLSLRDKAMMELFYSSGLRLAELAALNLSSVQYDLKEVRVLGKGNK 181

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLR 251
            RIVP+      A+L +       LN   Q+P     LF   +GK L+    Q  + +  
Sbjct: 182 ERIVPVGRLAIAALLNW-------LNCRKQIPCEDNALFVTEKGKRLSHRSIQARMAKWG 234

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +   L +    H LRHSFATH+L    DLR++Q +LGH  L+TTQIYT+++ ++    + 
Sbjct: 235 QEQALSVRVHPHKLRHSFATHMLEASADLRAVQELLGHANLATTQIYTSLDFQH----LA 290

Query: 312 EIYDQTHPSITQKDKK 327
           ++YD  HP   +   K
Sbjct: 291 KVYDNAHPRAKKTQDK 306


>gi|308050773|ref|YP_003914339.1| tyrosine recombinase XerD [Ferrimonas balearica DSM 9799]
 gi|307632963|gb|ADN77265.1| tyrosine recombinase XerD [Ferrimonas balearica DSM 9799]
          Length = 295

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 149/303 (49%), Gaps = 18/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +  +L  +RGLS  TL +Y  D  +F  FL+    E+ T   + +    +IR +++ R
Sbjct: 8   ERFCDDLWAQRGLSDNTLAAYRSDLCRFAEFLS----ERDT--PLARADSLDIRDYLAHR 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           ++      S  RSLS ++ F   L +R       +  +   K    LP +L+E +   L+
Sbjct: 62  KSIGAAKTSTARSLSALRRFFADLVRRGEREADPMALIAQPKMDRKLPDSLSEAEVEALL 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D            I  R+ A+L LLY  GLR+SE   L  + +   Q  +R+ GKG K R
Sbjct: 122 D-----APECDDPIQLRDKAMLELLYATGLRVSELTGLQMEQVSLRQGVVRVVGKGGKER 176

Query: 199 IVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VP+    +   LE Y  +     L +N    LF   RG  +    F   ++   +  G+
Sbjct: 177 LVPMGEQAQHQ-LEVYLREARGMLLGVNRSDVLFPSKRGVQMTRQTFWHRVKFYAQQSGI 235

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ +
Sbjct: 236 TKPLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQAR----LTELHRE 291

Query: 317 THP 319
            HP
Sbjct: 292 HHP 294


>gi|269123142|ref|YP_003305719.1| integrase family protein [Streptobacillus moniliformis DSM 12112]
 gi|268314468|gb|ACZ00842.1| integrase family protein [Streptobacillus moniliformis DSM 12112]
          Length = 287

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 144/287 (50%), Gaps = 23/287 (8%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E  ++L  L+ E+G +  T++SY  D          YT  K   + +  ++  +I  +I 
Sbjct: 3   EVNSFLDYLKFEKGNADKTIESYRND---------LYTFFKKVNKKVVDITSDDIYQYIE 53

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           K + +K    ++ R +S IKSF K+    KI        + NLKK   LP AL    ++ 
Sbjct: 54  KLK-EKYTYNTVIRKISSIKSFFKFCYIEKIIKNDPANKIHNLKKEKRLPNAL----SVE 108

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGD 195
            +++++   +HE   ++ RN  I+  L   G RISE ++L  ++I + D    ++ GKG 
Sbjct: 109 EINSIIQSFNHEP--VNRRNQLIVKFLVATGARISEVINLEIKDIENSDFEFAKLYGKGS 166

Query: 196 KIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K R VP+   + K I EY  ++ P          LF GIR +      F + + +  + +
Sbjct: 167 KYRFVPIYLELEKEIKEYIREIRPKIKGSEKSYLLFPGIRREN-----FWKILNKHAQNV 221

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           G+      H  RHS AT ++ NG D+R +Q +LGH  ++TT++YT+V
Sbjct: 222 GIEKKIHPHLFRHSTATMMIENGADIRIVQELLGHASITTTEVYTHV 268


>gi|111224556|ref|YP_715350.1| site-specific tyrosine recombinase [Frankia alni ACN14a]
 gi|111152088|emb|CAJ63815.1| site-specific tyrosine recombinase (partial match) [Frankia alni
           ACN14a]
          Length = 349

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 146/327 (44%), Gaps = 41/327 (12%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +LE ERGL++ ++ +Y  D R++L  L+        + ++  +   E+  F +  R 
Sbjct: 15  YLHHLEGERGLAQNSVLAYRRDLRRYLNHLSAQG-----LCSLDAVGEAEVAGFAAALR- 68

Query: 81  QKIGDR--------SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
             +GD         S+ R L  ++S  ++  +    +E     +R       LP+AL+  
Sbjct: 69  --LGDETHPPLAAASVARMLVAVRSLHRFAAEEGDVSEDVSRPVRPPTPPRKLPKALSVD 126

Query: 133 QALTLVDNVLLHTSHETKWIDARN-------------------SAILYLLYGCGLRISEA 173
           Q   ++             +  R                    +A+L LLYG G RISEA
Sbjct: 127 QVTAVLAAAAGTPRAGVAGVAGRAEDLAAAPVEPAEAVRRLRATALLELLYGTGARISEA 186

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRG 232
           + L   ++  + + +R+ GKG + RIVPL      A+ +Y  L  P          +F  
Sbjct: 187 VGLDVDDLDLESAAVRLHGKGGRDRIVPLGRCAVAALGDYLRLGRPSLAGPRSGAAVFLS 246

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
            RG  L+       +R      G+    + H LRHSFATHLL  G D+R +Q +LGH  +
Sbjct: 247 RRGNRLSRQSAWTVLRTAADQAGVD-GVSPHVLRHSFATHLLDGGADVRVVQELLGHASV 305

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHP 319
           STTQIYT V      D + E+Y  +HP
Sbjct: 306 STTQIYTLVTV----DRLREVYATSHP 328


>gi|91205817|ref|YP_538172.1| site-specific tyrosine recombinase XerD [Rickettsia bellii
           RML369-C]
 gi|123084556|sp|Q1RHT1|XERD_RICBR RecName: Full=Tyrosine recombinase xerD
 gi|91069361|gb|ABE05083.1| Tyrosine recombinase XerD [Rickettsia bellii RML369-C]
          Length = 305

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/296 (31%), Positives = 150/296 (50%), Gaps = 25/296 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L  ER LSK ++ SY+ D   F  +LA     ++ I T        IR ++     
Sbjct: 7   FLEMLLAERALSKNSILSYKRDLLDFHNYLAKQKLSELNITT------DNIRNWVEYLAE 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS+ R +S IKS+ ++L     T  + +LN+   K  N LP  L    ++  + +
Sbjct: 61  NSLQARSINRKISTIKSYYEFLISENHTNLNPLLNIDLPKYQNKLPEIL----SIDDIKS 116

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------GKG 194
           +L + S +     AR +A+++LLY  GLR+SE +SL   +I+ ++ +  ++      GKG
Sbjct: 117 LLEYCSQDISPEGARLNAMIHLLYASGLRVSELVSLKLSDILSNKVSREVKKIFSVLGKG 176

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LF-RGIRGKPLNPGVFQRYIR 248
           +K RI+ +      ++++Y  L   D  +N   P     LF        +    F   ++
Sbjct: 177 NKERIIVINEPAINSLVKY--LVVRDNFVNKTKPKNLIYLFPSSAAAGYMTRQNFAILLK 234

Query: 249 QLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
               Y GL P   + H LRHSFA+HLL  G DLR IQ +LGH  +STTQIYT++ +
Sbjct: 235 SAALYAGLNPEHISPHVLRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQT 290


>gi|15640159|ref|NP_229786.1| site-specific tyrosine recombinase XerC [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121587730|ref|ZP_01677491.1| tyrosine recombinase XerC [Vibrio cholerae 2740-80]
 gi|147673673|ref|YP_001218291.1| site-specific tyrosine recombinase XerC [Vibrio cholerae O395]
 gi|153818950|ref|ZP_01971617.1| tyrosine recombinase XerC [Vibrio cholerae NCTC 8457]
 gi|153822328|ref|ZP_01974995.1| tyrosine recombinase XerC [Vibrio cholerae B33]
 gi|227080364|ref|YP_002808915.1| integrase/recombinase XerC [Vibrio cholerae M66-2]
 gi|229508406|ref|ZP_04397910.1| tyrosine recombinase XerC [Vibrio cholerae BX 330286]
 gi|229508913|ref|ZP_04398403.1| tyrosine recombinase XerC [Vibrio cholerae B33]
 gi|229517027|ref|ZP_04406473.1| tyrosine recombinase XerC [Vibrio cholerae RC9]
 gi|229606679|ref|YP_002877327.1| site-specific tyrosine recombinase XerC [Vibrio cholerae MJ-1236]
 gi|254851512|ref|ZP_05240862.1| tyrosine recombinase xerC [Vibrio cholerae MO10]
 gi|255743919|ref|ZP_05417874.1| tyrosine recombinase XerC [Vibrio cholera CIRS 101]
 gi|262151158|ref|ZP_06028297.1| tyrosine recombinase XerC [Vibrio cholerae INDRE 91/1]
 gi|262167027|ref|ZP_06034744.1| tyrosine recombinase XerC [Vibrio cholerae RC27]
 gi|298501104|ref|ZP_07010904.1| tyrosine recombinase XerC [Vibrio cholerae MAK 757]
 gi|34223078|sp|Q9KVL4|XERC_VIBCH RecName: Full=Tyrosine recombinase xerC
 gi|172047518|sp|A5F4I4|XERC_VIBC3 RecName: Full=Tyrosine recombinase xerC
 gi|254799360|sp|C3LPX0|XERC_VIBCM RecName: Full=Tyrosine recombinase xerC
 gi|9654528|gb|AAF93305.1| integrase/recombinase XerC [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121548029|gb|EAX58107.1| tyrosine recombinase XerC [Vibrio cholerae 2740-80]
 gi|126510512|gb|EAZ73106.1| tyrosine recombinase XerC [Vibrio cholerae NCTC 8457]
 gi|126520154|gb|EAZ77377.1| tyrosine recombinase XerC [Vibrio cholerae B33]
 gi|146315556|gb|ABQ20095.1| tyrosine recombinase XerC [Vibrio cholerae O395]
 gi|227008252|gb|ACP04464.1| integrase/recombinase XerC [Vibrio cholerae M66-2]
 gi|227011870|gb|ACP08080.1| integrase/recombinase XerC [Vibrio cholerae O395]
 gi|229346090|gb|EEO11062.1| tyrosine recombinase XerC [Vibrio cholerae RC9]
 gi|229354030|gb|EEO18963.1| tyrosine recombinase XerC [Vibrio cholerae B33]
 gi|229354679|gb|EEO19601.1| tyrosine recombinase XerC [Vibrio cholerae BX 330286]
 gi|229369334|gb|ACQ59757.1| tyrosine recombinase XerC [Vibrio cholerae MJ-1236]
 gi|254847217|gb|EET25631.1| tyrosine recombinase xerC [Vibrio cholerae MO10]
 gi|255738402|gb|EET93792.1| tyrosine recombinase XerC [Vibrio cholera CIRS 101]
 gi|262024545|gb|EEY43229.1| tyrosine recombinase XerC [Vibrio cholerae RC27]
 gi|262031052|gb|EEY49677.1| tyrosine recombinase XerC [Vibrio cholerae INDRE 91/1]
 gi|297540138|gb|EFH76199.1| tyrosine recombinase XerC [Vibrio cholerae MAK 757]
          Length = 311

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 154/304 (50%), Gaps = 16/304 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  E+GLS  T ++Y+        +L      ++ +    QL    +R  + + + Q + 
Sbjct: 24  LHTEKGLSLYTQRNYKQQLETMTQYLV-----QVGLTHWTQLDSAWVRQLVMQGKRQGMK 78

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S+   LS ++SFL +L  R     +    +   +K  +LP+ L+  +   L++     
Sbjct: 79  ASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVDEMAQLLEVT--- 135

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
              +   +  R+ AI+ L+YG GLR++E +S+  +++   +  +R+ GKG+K R V    
Sbjct: 136 ---DDDPLSIRDRAIMELMYGAGLRLAELVSIDIKDVNLSEGEIRVIGKGNKERKVWFAG 192

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             ++ + ++  L    L  + +  LF    G  ++    Q+ + +  +   +    + H 
Sbjct: 193 QAQEWVGKWLKLRS-QLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPHK 251

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ ++    + ++YDQ HP   +K
Sbjct: 252 LRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQH----LAQVYDQAHPRARKK 307

Query: 325 DKKN 328
           +K +
Sbjct: 308 NKDD 311


>gi|260433976|ref|ZP_05787947.1| tyrosine recombinase XerD [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417804|gb|EEX11063.1| tyrosine recombinase XerD [Silicibacter lacuscaerulensis ITI-1157]
          Length = 316

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 100/335 (29%), Positives = 154/335 (45%), Gaps = 43/335 (12%)

Query: 1   MEGNNLPE--IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI 58
           M G   PE  I +F         L+    E G +  TL +Y  D + F  +L+ +     
Sbjct: 1   MPGPETPELWISAF---------LEAQAAELGAATNTLLAYGRDLKDFAGWLSRHG---- 47

Query: 59  TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
                 Q     I A++     Q +   +  R LS IK   ++  +      +  + ++ 
Sbjct: 48  --AGFAQADQARIEAYLIDCDAQGLSRATRARRLSAIKQLYRFAFEEGWRDTNPAIQIKG 105

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA---RNSAILYLLYGCGLRISEALS 175
             +   LP+ L+  +    VD  LL  + +T    A   RN+ ++ LLY  G+R++E +S
Sbjct: 106 PGRQKRLPKTLDVAE----VDR-LLQAARQTGRTQADRLRNTCLMELLYATGMRVTELVS 160

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           L       D   L + GKG K R+VPL P  R A+  +  L   D      +    G R 
Sbjct: 161 LPVSAARGDPRMLLVLGKGGKERMVPLSPPARDALAAW--LGARDAVEEASVAKG-GQRS 217

Query: 236 KPLNP-----GVFQRY-----IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
           + L P     G   R+     +++L    G+ P   T HTLRH+FATHLL+NG DLRSIQ
Sbjct: 218 RFLFPSRGKSGHLTRHRFFLLVKELAVCGGVSPEKVTPHTLRHAFATHLLANGADLRSIQ 277

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           ++LGH  ++TT+IYT+V  +     + E+  Q HP
Sbjct: 278 TLLGHADVATTEIYTHVLDER----LSELVLQHHP 308


>gi|323359719|ref|YP_004226115.1| integrase [Microbacterium testaceum StLB037]
 gi|323276090|dbj|BAJ76235.1| integrase [Microbacterium testaceum StLB037]
          Length = 301

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 141/307 (45%), Gaps = 21/307 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L +L   R LS  T+++Y  D             +++ I+ +RQ  +    A  +K 
Sbjct: 8   EAFLTHLATVRRLSPATVRAYRSDLADLARSTGDAPLDELDIEALRQWQWEATSAGRAKA 67

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
              +          S  ++FL + ++  +        +   K+  +LP          ++
Sbjct: 68  TAAR--------RTSAARAFLSWAREEGLIEVDPSPRLVAPKRGRTLPVVATTSALDEVL 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                H +   + +  R+ AIL +LYG G R+SE   L   ++  +  TLR++GKGD+ R
Sbjct: 120 AGAAAH-AESGEPVALRDHAILEVLYGSGARVSELCGLDLDDVDRESRTLRVRGKGDRER 178

Query: 199 IVPL-LPSVRKAILEYYDLCPFDL----NLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRR 252
           +VP  +P+ R   LE Y +    +       +  P +F G RG  L P      + ++  
Sbjct: 179 VVPYGVPAARA--LEAYVVRGRPVLSARGDGVAGPAVFLGARGARLGPRAVHALVSRVVA 236

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            +    +   H LRHS ATHLL  G DLRS+Q ILGH  L TTQIYT+V+    G+ + E
Sbjct: 237 PVVGAETLGPHALRHSAATHLLDGGADLRSVQEILGHASLGTTQIYTHVS----GERLRE 292

Query: 313 IYDQTHP 319
            Y   HP
Sbjct: 293 AYRLAHP 299


>gi|304394166|ref|ZP_07376089.1| tyrosine recombinase XerD [Ahrensia sp. R2A130]
 gi|303293606|gb|EFL87983.1| tyrosine recombinase XerD [Ahrensia sp. R2A130]
          Length = 308

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 143/309 (46%), Gaps = 21/309 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-KITIQTIRQLSYTEIRAFISK 77
           +++L+ +  ERG +  TL  Y  D       LA Y+   + T  T+       +R ++++
Sbjct: 8   ESFLEMMSAERGAAANTLSGYGRD-------LADYSAHCRNTRTTVMDAGAEHVRGWMAR 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    +  R LS ++   ++L    +  +     +   K    LP+ ++E     L
Sbjct: 61  LADSGCAASTQARKLSAVRQLYRFLFSDGLREDDPTATVDRPKTGRPLPKVISEIDVDRL 120

Query: 138 V----DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           +    D      +   +   AR  A+L LLY  GLR+SE ++L    I      + + GK
Sbjct: 121 LGAAQDAARKGETSAARLRAARTLALLELLYASGLRVSELVALRSATITPQTRFVNVTGK 180

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF--RGIRGKPLNPGVFQRYIRQLR 251
           G K R+VP+  +  +A+ E Y     D        LF  R   G  +    F R ++ L 
Sbjct: 181 GAKERLVPISAAALEAV-EAYRQAARDHKQAPSAWLFPSRSAAGH-ITRQHFARDLKALA 238

Query: 252 RYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              GLP S  + H LRH+FA+HLL NG DLR++Q +LGH  ++TTQIYT+V  +     +
Sbjct: 239 TSAGLPASKLSPHVLRHAFASHLLQNGADLRAVQQLLGHADIATTQIYTHVLEER----L 294

Query: 311 MEIYDQTHP 319
            ++ +  HP
Sbjct: 295 RDLVETAHP 303


>gi|78049232|ref|YP_365407.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037662|emb|CAJ25407.1| integrase-recombinase XerD [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 323

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 150/309 (48%), Gaps = 23/309 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L     E+G+++ TL+SY  D    L  LA + +       +  +    +  ++  R
Sbjct: 28  ERFLDRFWAEQGVARQTLESYRRD----LEGLARWRDG--AHGGLLGIDRAALFDYLRWR 81

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  RS  R LS +++F     +  + ++     +   +   SLP+AL E Q    +
Sbjct: 82  TQANYSPRSTARLLSTLRAFYGLCLRDGVRSDDPTTLIDPPQLPRSLPKALTESQ----I 137

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           + +L     +T     RN A+L L+Y  GLR+SE ++L    +   Q  LR+ GKG K R
Sbjct: 138 EALLAAPDVDTP-AGLRNRAMLELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDR 196

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNI-------QLPLFRGIRGKPLNPGVFQRYIRQLR 251
           +VPL    +  +  Y       L  N        Q+PLF     +PL+   F   +++  
Sbjct: 197 LVPLGEESQHWLERYLREARPLLAANKPVAAVDGQVPLFIDAARRPLSRQQFWALVKRYA 256

Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              G+ P + + H LRHSFATHLL++G DLR++Q +LGH  LSTTQIYT V  ++    +
Sbjct: 257 AVAGIDPDTVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQH----L 312

Query: 311 MEIYDQTHP 319
            +++   HP
Sbjct: 313 QKLHASHHP 321


>gi|146277571|ref|YP_001167730.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145555812|gb|ABP70425.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 311

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 137/289 (47%), Gaps = 16/289 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+    E   ++ T  +Y  D + F  +LA  +EE  T           + A++     
Sbjct: 13  FLEAQAAELDAARNTRLAYGRDLKDFAGWLARRSEEFATADR------AAVEAYLVFCDA 66

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q +   +  R LS I+   ++  +     ++  + +R   ++  LP+ L  ++   L+D 
Sbjct: 67  QGLSPATRARRLSSIRQLYRFAHEEGWRADNPAIRLRGPGRARRLPKTLEIEEVDRLLDA 126

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                      +  RN  +L LLY  G+R+SE + L       +   + ++GKG K R+V
Sbjct: 127 ARDKGRRAADQV--RNRCLLELLYATGMRVSEMVGLPVAAARGNPQMILVRGKGGKERMV 184

Query: 201 PLLPSVRKAILEYY---DLCPFDLNLNIQLP---LFRGIRGKP-LNPGVFQRYIRQLRRY 253
           PL P  R+A+ ++    D          ++P   LF G      L    F   I+Q+   
Sbjct: 185 PLSPPAREALADWLRVRDEAEAAGQKAGRVPSRFLFPGSGAAGHLTREYFYVLIKQIAVL 244

Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            G+ P   T HTLRH+FATHLL+ G DLR IQ++LGH  LSTT+IYT+V
Sbjct: 245 AGVDPSKVTPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHV 293


>gi|113866617|ref|YP_725106.1| site-specific tyrosine recombinase XerD [Ralstonia eutropha H16]
 gi|113525393|emb|CAJ91738.1| Site-specific recombinase XerD [Ralstonia eutropha H16]
          Length = 312

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/297 (30%), Positives = 143/297 (48%), Gaps = 17/297 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E GLS+ T+ +Y    R+ L  LA + + +   + +       + A+ + R TQ   
Sbjct: 29  LWLEDGLSRNTIDAY----RRDLTLLARWLQHEHRGE-LPGADDGALSAYFNARHTQSRA 83

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R L+  + F ++  +  +      L +R  K+    P+ L E Q    VD +L  
Sbjct: 84  S-SANRRLAVFRRFYQWALREHLVEADPCLLLRPAKQPPRYPKTLTESQ----VDALLEA 138

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLL 203
              +T  +  R+  +L L+Y  GLR+SE   +    I  ++   R+  GKGDK R+VP  
Sbjct: 139 PDTDTP-LGLRDRTMLELMYASGLRVSELTQMKTIEIGLNEGVARVVGGKGDKERLVPFG 197

Query: 204 PSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
                 +  Y     P  L       LF   RG+ +    F   I++  R  G+    + 
Sbjct: 198 QQAGDWLRRYLASARPALLAGRACDALFVTQRGEGMTRQAFWHLIKRHARDAGVHAPLSP 257

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     + E++ Q HP
Sbjct: 258 HTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER----LRELHQQHHP 310


>gi|78484996|ref|YP_390921.1| tyrosine recombinase XerD [Thiomicrospira crunogena XCL-2]
 gi|78363282|gb|ABB41247.1| tyrosine recombinase XerD subunit [Thiomicrospira crunogena XCL-2]
          Length = 297

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 148/308 (48%), Gaps = 19/308 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L  E  +++Q L +  GLS  TLQ+Y+ D ++        T+  +    + Q S  ++  
Sbjct: 5   LTPEITDFIQYLRLNEGLSDNTLQAYQRDLKK--------TQLALGKTDLSQASREQLED 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++ +    ++   S+ R LS +K F  +L       +     ++  +    +P  ++E Q
Sbjct: 57  YLFQLHVDQVNPSSIARCLSALKRFYLFLILHNRIQQDPAAQLKAPQLIKKIPSVISEAQ 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                   LL+    T  +  R+ AIL L+Y  GLR+SE ++L  + +      +++ GK
Sbjct: 117 V-----EALLNAPDLTTPLGVRDKAILELMYASGLRVSELVNLPYEQLNLSAGLVQVTGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLR 251
           G+K RIVP+     +AI  Y     P  +     +  LF    G+ +        I+ L 
Sbjct: 172 GNKERIVPIGQMAIEAIEAYLKSARPALVGKQKWVSTLFVSRIGRTMTRQTLWHRIKNLA 231

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               +    + H LRH+FATHL+++G DLR++Q +LGH  LSTTQIYT+V      + + 
Sbjct: 232 LQADIRSQLSPHGLRHAFATHLINHGADLRTVQLLLGHSDLSTTQIYTHV----AKERLQ 287

Query: 312 EIYDQTHP 319
            I+ Q HP
Sbjct: 288 SIHHQHHP 295


>gi|319955952|ref|YP_004167215.1| integrase family protein [Nitratifractor salsuginis DSM 16511]
 gi|319418356|gb|ADV45466.1| integrase family protein [Nitratifractor salsuginis DSM 16511]
          Length = 284

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/295 (31%), Positives = 142/295 (48%), Gaps = 45/295 (15%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RG S+ T+ +YE   RQ L +     E K  I  I  L          +RR      R++
Sbjct: 16  RGYSERTVATYELPLRQMLQYHRLKREGKQLILDIMPL----------RRRIASNTPRTV 65

Query: 89  KRSLSGIKSFLKYLKKRK---ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            + LS ++SF++YL+ ++   I  E +     ++K   +LP+ + E+    +++      
Sbjct: 66  AKKLSAVRSFVRYLQDQRNLSILLEGD----ESVKVPRTLPKPIEERYIREVLEAA---- 117

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
                  D     IL LLYG GLRISE   L  + I  D+  +RI GKG K R +PL  +
Sbjct: 118 -------DPTERLILGLLYGMGLRISELAGLRREQI--DREWIRIHGKGGKTRQLPLPQA 168

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           V + +  Y  L P  + L      F   +GK PL+    +  +++L R  G+    T H 
Sbjct: 169 VLQMLDHYLALHPAGVYL------FE--KGKAPLSAAQIRYRVQKLFRSRGI--KATPHQ 218

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           LRHSFATHLL +G  +  +  +LGH  ++TTQIYT + S       +  Y + HP
Sbjct: 219 LRHSFATHLLDHGARISDVSELLGHASMATTQIYTQLGSSR----KLREYMKAHP 269


>gi|153803069|ref|ZP_01957655.1| tyrosine recombinase XerC [Vibrio cholerae MZO-3]
 gi|124121388|gb|EAY40131.1| tyrosine recombinase XerC [Vibrio cholerae MZO-3]
          Length = 312

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 154/304 (50%), Gaps = 16/304 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  E+GLS  T ++Y+        +L      ++ +    QL    +R  + + + Q + 
Sbjct: 24  LHTEKGLSLYTQRNYKQQLETMTQYLV-----QVGLTHWTQLDSAWVRQLVMQGKRQGMK 78

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S+   LS ++SFL +L  R     +    +   +K  +LP+ L+  +   L++     
Sbjct: 79  ASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVDEMAQLLEVT--- 135

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
              +   +  R+ AI+ L+YG GLR++E +S+  +++   +  +R+ GKG+K R V    
Sbjct: 136 ---DDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVWFAG 192

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             ++ + ++  L    L  + +  LF    G  ++    Q+ + +  +   +    + H 
Sbjct: 193 QAQEWVGKWLKLRS-QLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPHK 251

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ ++    + ++YDQ HP   +K
Sbjct: 252 LRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQH----LAKVYDQAHPRARKK 307

Query: 325 DKKN 328
           + K+
Sbjct: 308 NNKD 311


>gi|77165718|ref|YP_344243.1| tyrosine recombinase XerD [Nitrosococcus oceani ATCC 19707]
 gi|254433312|ref|ZP_05046820.1| tyrosine recombinase XerD [Nitrosococcus oceani AFC27]
 gi|76884032|gb|ABA58713.1| Tyrosine recombinase XerD [Nitrosococcus oceani ATCC 19707]
 gi|207089645|gb|EDZ66916.1| tyrosine recombinase XerD [Nitrosococcus oceani AFC27]
          Length = 305

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 152/302 (50%), Gaps = 16/302 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +E GL++ TL +Y  D  +F  +L  +++ +  I   R+    ++ A+++ R
Sbjct: 17  ERFLNALWLEEGLAENTLAAYRRDLERFSRWL--HSQGRTLIGAQRE----DLLAYLAHR 70

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  RS+ RS+S ++ F +YL   KI        + + +    LP +L+E++     
Sbjct: 71  LEGGDKSRSVARSVSSLRRFYRYLMGEKIRDNDPSDRVESPRLGRLLPESLSEEEV---- 126

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL        +  R+  +L  LY  GLR+SE ++LT   +   Q  + + GKG+K R
Sbjct: 127 -EALLAAPKTEDSLGLRDRTMLETLYATGLRVSELVNLTLPQLNPRQGVVYLSGKGNKER 185

Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       +  Y       L    +   LF   RG  ++   F   I++  R  G+ 
Sbjct: 186 LVPLGEVALSWLDRYCREARLGLVRSQVNEILFLTRRGGAMSRQAFWYLIKRYARQSGIQ 245

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + +++ Q 
Sbjct: 246 KALSPHTLRHAFATHLLNHGADLRVVQILLGHADLSTTQIYTHVARAR----LQQLHQQH 301

Query: 318 HP 319
           HP
Sbjct: 302 HP 303


>gi|156935864|ref|YP_001439780.1| site-specific tyrosine recombinase XerC [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156534118|gb|ABU78944.1| hypothetical protein ESA_03747 [Cronobacter sakazakii ATCC BAA-894]
          Length = 301

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 144/298 (48%), Gaps = 17/298 (5%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L++ER LS +TL +YE   RQ    +    E    +++  Q     +R+   + R  
Sbjct: 14  LRYLKVERQLSPVTLLNYE---RQLTAIVGLAGEA--GLKSWAQCDAAMVRSLAVRSRRA 68

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +G  SL   LS ++SF  +   +     +    +   K    LP+ ++      L+D  
Sbjct: 69  GLGPSSLALRLSALRSFFDWQVSQGELKANPAKGVSTPKTPRHLPKNIDVDDVNRLLDID 128

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           L         +  R+ A+L ++YG GLR+SE +++   ++      + + GKG K R +P
Sbjct: 129 L------NDPLAVRDRAMLEIMYGAGLRLSELVNIDCNHLDLTSGEVWVMGKGSKERRLP 182

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           +  S    I  + +L   +L       LF   +GK ++    Q+   +     GL     
Sbjct: 183 IGRSAVAWIEHWLNL--RELFGPDDDALFLSKQGKRISARNVQKRFAEWGIKQGLNSHVH 240

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++    +  +YD  HP
Sbjct: 241 PHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 294


>gi|78067360|ref|YP_370129.1| site-specific tyrosine recombinase XerD [Burkholderia sp. 383]
 gi|77968105|gb|ABB09485.1| Tyrosine recombinase XerD [Burkholderia sp. 383]
          Length = 316

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 140/297 (47%), Gaps = 19/297 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E GL++ TL +Y  D   F  +LA   +  +       +    +  +I+ R   K  
Sbjct: 35  LWLEHGLARNTLDAYRRDLVLFSQWLAETHDAPLD-----SVDEAMVTGYIAARSDGKA- 88

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R LS  + +  +  +    +    L + + K++   P  L+E Q   L+    + 
Sbjct: 89  -TSSNRRLSVFRRYYGWAVREHRVSADPTLRITSAKQAARFPSTLSEAQVEALLGAPDIG 147

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           T      +  R+  +L L+Y  GLR+SE + L    +  ++  +R+ GKG K R+VP   
Sbjct: 148 TP-----LGLRDRTMLELMYASGLRVSELVMLKTVEVGLNEGVVRVMGKGSKERLVPF-G 201

Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            V    +E Y  D  P  L       LF   RG  +    F   I++  ++  +    + 
Sbjct: 202 EVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQHAEVRAHLSP 261

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++ Q HP
Sbjct: 262 HTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LKTLHAQHHP 314


>gi|120436726|ref|YP_862412.1| tyrosine recombinase XerC [Gramella forsetii KT0803]
 gi|117578876|emb|CAL67345.1| tyrosine recombinase XerC [Gramella forsetii KT0803]
          Length = 296

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 155/300 (51%), Gaps = 15/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L++E+  +  T+ +Y+ D   F  F+    E+     TI ++SY++IR++I +   
Sbjct: 6   FLDYLQLEKKYAFHTITAYKADLNAFQDFIQNTFEQ----DTILEVSYSQIRSWIVELSE 61

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             I +R++ R +S +K++ ++L K K    S +   + LK    +    +E++ +++++N
Sbjct: 62  SGISNRTINRKISSLKAYYRFLLKTKQIEFSPLAKHKALKTPKKIQIPFSEEEIVSVLEN 121

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +      ++ +   R   I+ L Y  G+R  E +++   ++  ++  L++ GK  K R +
Sbjct: 122 I-----DDSTYEGIRGRLIVELFYSTGIRRIELINIQLSDLDLERGVLKVLGKRSKERYI 176

Query: 201 PLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           PL+ SV    ++Y +    + +N + +  LF   +G  +      R I      +   L 
Sbjct: 177 PLISSVIDTAVKYLERRREEGVNHDSEF-LFLTSKGDKIYESFVYRVINNYFSEVSGKLK 235

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + H LRHSFATHLL+ G +L +++ +LGH  L+ TQ+YT+    N    + +I+   HP
Sbjct: 236 KSPHILRHSFATHLLNQGANLNAVKELLGHSSLAATQVYTH----NSIAELSKIHQNAHP 291


>gi|332653317|ref|ZP_08419062.1| tyrosine recombinase XerD [Ruminococcaceae bacterium D16]
 gi|332518463|gb|EGJ48066.1| tyrosine recombinase XerD [Ruminococcaceae bacterium D16]
          Length = 295

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 145/296 (48%), Gaps = 17/296 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  E+  S  T+ SY  D  QF   +A   E+ + +    +L+  ++  ++     +   
Sbjct: 14  LTTEKKASANTVSSYLRDMHQFETAMA---EQDLELT---ELAVQDVELYVDGLTRKGKS 67

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             ++ RS++ IKSF   +    I   +   ++   K    LP+ L  K+       + L 
Sbjct: 68  AATVTRSIASIKSFYNCMIALGIMDRNPAKDVVAAKVERKLPQILTGKEV-----ELFLE 122

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
               +     R+ A+L LLY  G+R+SE ++L   ++      L  + KG + RI+PL  
Sbjct: 123 QPDCSDLKGFRDRAMLELLYATGIRVSELIALDVDDLNLPAGVLHCESKG-RERIIPLYH 181

Query: 205 SVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           +  +A+ +Y   + P  +    +  LF  + G+ ++   F + I+  +   G+    T H
Sbjct: 182 TAIRALSDYITQVRPQLVESPEETALFVNMSGERMSRQGFWKLIKHYQEKAGIQKDITPH 241

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           TLRHSFA HLL NG DLRSIQ +LGH  +S+TQIY+ + S+     + ++Y + HP
Sbjct: 242 TLRHSFAAHLLENGADLRSIQEMLGHADISSTQIYSRLVSQK----LKDVYHKAHP 293


>gi|158313011|ref|YP_001505519.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158108416|gb|ABW10613.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 344

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 137/309 (44%), Gaps = 22/309 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + ++++L  ER  S  T+++Y  D                    +  L    +R +++  
Sbjct: 48  EAFVRHLVAERDRSPETVRAYRADL-----AGLRAHAAAAGRTDLLDLDLAVLRGWLAGM 102

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R+      ++ R  S  + F  +  +R    +     +   +    +P+ L   QA    
Sbjct: 103 RSAGAAPATIARRASLARVFSAFAARRGFLPDDVGARLATTRAPRRIPQVLTAAQA---- 158

Query: 139 DNVLLHTSHETKWIDARNSA-------ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           D +L       +  D R+ A       +L +LYG  +R+SE   L   ++  ++  LR+ 
Sbjct: 159 DRLLETRPRGDRAQDPRDVALNLRDDLVLEILYGSAVRVSELCRLDIGDVDHERRLLRVH 218

Query: 192 GKGDKIRIVPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           GKG + R VP  +P+     +      P+ L   ++  L  G RG  L+P   +R ++  
Sbjct: 219 GKGGRQRSVPFSVPAAGALDVWLTRGRPY-LATRVEAALLLGARGGRLDPRSVRRLVQAR 277

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+P   T H LRH  ATH++  G DLRS+Q +LGH  LSTTQIYT+V  +     +
Sbjct: 278 GAAAGVPTGLTPHGLRHGAATHMVEGGADLRSVQELLGHASLSTTQIYTHVTPER----L 333

Query: 311 MEIYDQTHP 319
              +DQ HP
Sbjct: 334 RAAFDQAHP 342


>gi|157827055|ref|YP_001496119.1| site-specific tyrosine recombinase XerD [Rickettsia bellii OSU
           85-389]
 gi|157802359|gb|ABV79082.1| site-specific tyrosine recombinase XerD [Rickettsia bellii OSU
           85-389]
          Length = 305

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/296 (31%), Positives = 150/296 (50%), Gaps = 25/296 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L  ER LSK ++ SY+ D   F  +LA     ++ I T        IR ++     
Sbjct: 7   FLEMLLAERALSKNSILSYKRDLLDFHNYLAKQKLSELNITT------DNIRNWVEYLAE 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS+ R +S IKS+ ++L     T  + +LN+   K  N LP  L    ++  + +
Sbjct: 61  NGLQARSINRKISTIKSYYEFLISENHTNLNPLLNIDLPKYQNKLPEIL----SIDDIKS 116

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------GKG 194
           +L + S +     AR +A+++LLY  GLR+SE +SL   +I+ ++ +  ++      GKG
Sbjct: 117 LLEYCSQDISPEGARLNAMIHLLYASGLRVSELVSLKLSDILSNKVSREVKKIFSVLGKG 176

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LF-RGIRGKPLNPGVFQRYIR 248
           +K RI+ +      ++++Y  L   D  +N   P     LF        +    F   ++
Sbjct: 177 NKERIIVINEPAINSLVKY--LVVRDNFVNKTKPKNLIYLFPSSAAAGYMTRQNFAILLK 234

Query: 249 QLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
               Y GL P   + H LRHSFA+HLL  G DLR IQ +LGH  +STTQIYT++ +
Sbjct: 235 SAALYAGLNPEHISPHVLRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQT 290


>gi|198284453|ref|YP_002220774.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218667286|ref|YP_002427120.1| tyrosine recombinase XerC [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198248974|gb|ACH84567.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218519499|gb|ACK80085.1| tyrosine recombinase XerC [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 314

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 145/298 (48%), Gaps = 14/298 (4%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +S  T+ +Y  D   +  F     + +I      Q+    +RA++   R++ +  RSL+R
Sbjct: 20  VSPATISAYSRDLHAWARFALQRGQTEIA-----QMDRGSLRAYLLAERSRGVSVRSLRR 74

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
             + +++  ++L++      + +  +   +    LP  L   QA  L+   +  T    +
Sbjct: 75  HFAALRALYRHLQQDAPELRNPVSGLAMPRAEQRLPDWLTVDQARLLMQPAISDTEAAPQ 134

Query: 151 -WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
            +   R+  IL LLY   LR+SE   L   ++     T+R+ GKG K RIVP+      A
Sbjct: 135 DFTGLRDQLILELLYSSALRVSELAGLNLGDLDPHAGTVRVLGKGRKERIVPVGQPAWAA 194

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLSTTAHTLRHS 268
           +  Y    P  +  + +  LF   RG+ L     Q  +++L    LG PL    HTLRHS
Sbjct: 195 LRAYLAARPA-VAASDEPALFVNRRGQRLTVRSIQVRVKKLGDARLGQPLHP--HTLRHS 251

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
            A+HLL + GDLR++Q  LGH  + TT IYT+++ +     + ++YDQ HP   + D+
Sbjct: 252 AASHLLQSSGDLRAVQEYLGHAGIGTTAIYTHMDYQQ----LAQVYDQAHPRSRRGDQ 305


>gi|83595882|gb|ABC25244.1| tyrosine recombinase xerC [uncultured marine bacterium Ant4D3]
          Length = 312

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 156/315 (49%), Gaps = 34/315 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFL-----AFYTEEKITIQTIRQLSYTEIRA 73
           Q +L  L   +  S  T+ +Y  D ++ +  L       + + +    TIR        A
Sbjct: 13  QQYLDYLAYNKRYSPHTINAYARDMQRLIETLEDQGHGMWADAQA--DTIRD-------A 63

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            ++ R+T  +  +S++R LS  +SF  YL ++ +   + +  +R  K    LP +L+  Q
Sbjct: 64  MVTARKTH-LAPKSIQRILSSWRSFFTYLLQQNLVKLNPVDGIRAPKSPRKLPNSLDPDQ 122

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
               +  VL  T      +  R+ A+L L Y CGLR++E  SL   +I    ++L + GK
Sbjct: 123 ----ISQVLNATITSDDPMAMRDKAMLELTYSCGLRLAELASLNVFDIDLTDASLIVTGK 178

Query: 194 GDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           G+K R +P+    + +++  + +   L   D N      LF   RG+ +     Q  +  
Sbjct: 179 GNKTRQLPIGRQAITALKSWLQQRGQLKCHDANA-----LFINHRGQRMGVRGIQMRMAN 233

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           +    G  +    H LRHSFA+HLL + GDLR++Q +LGH  +STTQ+YT+++ ++    
Sbjct: 234 MAATHGQHIH--PHMLRHSFASHLLQSSGDLRAVQELLGHSNISTTQVYTHLDYQH---- 287

Query: 310 MMEIYDQTHPSITQK 324
           + ++YD+ HP   +K
Sbjct: 288 LAKVYDKAHPRAQEK 302


>gi|262392887|ref|YP_003284741.1| tyrosine recombinase XerC [Vibrio sp. Ex25]
 gi|262336481|gb|ACY50276.1| tyrosine recombinase XerC [Vibrio sp. Ex25]
          Length = 310

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 152/301 (50%), Gaps = 16/301 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  E+GLS  T ++Y    +Q L  +A +  E + ++   Q+    +R    K   + + 
Sbjct: 24  LRSEKGLSLHTQRNY----KQQLETMAQHLAE-MGLKDWSQVDAGWVRQLAGKGMREGMK 78

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             SL   LS ++SF  +L  R   + +    +   +K   LP+ L+  +   L++     
Sbjct: 79  ASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVSQLLE----- 133

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
             +E   +  R+ A++ L+YG GLR++E +S+  +++      LR+ GKGDK R VP   
Sbjct: 134 -VNEDDPLAVRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVIGKGDKERKVPFSG 192

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
              + + ++  +   DL    +  LF    G  ++    Q+ + +  +   +    + H 
Sbjct: 193 MATEWVAKWLKVR-GDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISPHK 251

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ ++    + + YDQ HP   +K
Sbjct: 252 LRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQH----LAQAYDQAHPRARKK 307

Query: 325 D 325
           +
Sbjct: 308 N 308


>gi|253690334|ref|YP_003019524.1| tyrosine recombinase XerC [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756912|gb|ACT14988.1| tyrosine recombinase XerC [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 311

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 154/315 (48%), Gaps = 20/315 (6%)

Query: 7   PEIVSFELLK-ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           PE  S  LL+ +   +L+ L++ER LS LT  SY    RQ    +   +   +     R+
Sbjct: 8   PEAPSSSLLQADVDAFLRYLKVERQLSPLTQTSY---LRQLSAIITILSAAGVV--DWRK 62

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           L    +R+ +S+ +   +   SL   LS ++SFL ++  R + T +    +   +    L
Sbjct: 63  LDAAGVRSVVSRSKRDGLHSGSLALRLSALRSFLDWMVSRGVLTANPAKGISTPRAGRPL 122

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           P+ ++       VD +      +     A R+  +L ++YG GLR++E + +  Q+I   
Sbjct: 123 PKNMD-------VDEMDRLLDIDLDDPLAVRDRTMLEVMYGAGLRLAELVGMDCQHIDLA 175

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
              + + GKG K R +P+  +     LE + L   +L       +F   +G+ ++    Q
Sbjct: 176 SGEVWVMGKGSKERKLPIGKTA-VTWLERW-LALRELFGPQDDAVFISNQGRRISMRNVQ 233

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +   +     G+      H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ +
Sbjct: 234 KRFAEWGIKQGVNSHVHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQ 293

Query: 305 NGGDWMMEIYDQTHP 319
           +    +  +YD  HP
Sbjct: 294 H----LASVYDAAHP 304


>gi|269977906|ref|ZP_06184860.1| tyrosine recombinase XerC [Mobiluncus mulieris 28-1]
 gi|269933872|gb|EEZ90452.1| tyrosine recombinase XerC [Mobiluncus mulieris 28-1]
          Length = 361

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 154/346 (44%), Gaps = 58/346 (16%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFL----------AFYTEEKITIQTIRQLSYTE---- 70
           L   RG S  +L++Y  D R+ L FL                +    + R  +  E    
Sbjct: 21  LRANRGFSPHSLRAYLGDLRELLEFLCPPVALVPAAGLAAPPRSGESSGRGFAAPELSRA 80

Query: 71  ------IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
                 IRA++     +     +L R ++  ++F  +  K    +  + L + + K  NS
Sbjct: 81  LSDPARIRAWLGDMSRRGASRATLARRVASFRTFSAWALKHGFMSCDSGLRLHSPKPDNS 140

Query: 125 LPRALNEKQALTLVDNVLLH----------TSHETKWIDA----------------RNSA 158
           LP  LNE Q   L++   L           +  +T+  D+                R+ A
Sbjct: 141 LPTVLNEAQVARLLNTARLQAYSLGVHQKASKSQTEIPDSIPGDSAVPYRANPVGLRDWA 200

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD--- 215
           +L LLY  G+R+SE   L  ++I   ++T+R+ GKG K R+ P       A+ EY +   
Sbjct: 201 LLELLYATGVRVSELTGLRLRDISRSEATIRVCGKGGKERVAPYGIPAGIALDEYLEQGR 260

Query: 216 --LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
             L   D +      +F G++G  L+  + +  + ++    G+P     H LRH+ ATHL
Sbjct: 261 PVLVSPDRDAGEW--VFLGVKGGRLDTRLVRGMLHRMTAVAGVP-DLGPHGLRHTAATHL 317

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           L+ G DLR +Q ILGH  L TTQ YT++++ +    + ++Y Q HP
Sbjct: 318 LNGGADLRCVQEILGHASLGTTQRYTHLSTTH----LRQVYLQAHP 359


>gi|134296744|ref|YP_001120479.1| site-specific tyrosine recombinase XerD [Burkholderia vietnamiensis
           G4]
 gi|134139901|gb|ABO55644.1| tyrosine recombinase XerD [Burkholderia vietnamiensis G4]
          Length = 320

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 137/297 (46%), Gaps = 19/297 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E GLS+ TL +Y  D   F  +LA      +            +  +I+ R   K  
Sbjct: 39  LWLEHGLSRNTLDAYRRDLMLFSQWLAATHHAALD-----SADEAMVTGYIAARSDGKA- 92

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R LS  + +  +  +    +    L + + K+    P  L+E Q   L+    + 
Sbjct: 93  -TSSNRRLSVFRRYYGWAVREHRASADPTLRIASAKQGARFPSTLSEAQVEALLGAPDIG 151

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           T      +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+VP   
Sbjct: 152 TP-----LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPF-G 205

Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            V    +E Y  D  P  L       LF   RG  +    F   I++  +   +    + 
Sbjct: 206 EVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQRADVRAHLSP 265

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++ Q HP
Sbjct: 266 HTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LRTLHAQHHP 318


>gi|294625207|ref|ZP_06703848.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292600481|gb|EFF44577.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
          Length = 323

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 144/309 (46%), Gaps = 23/309 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L     E+G+++ TL+SY  D      +        + I       Y      +  R
Sbjct: 28  ERFLDRFWAEQGVARQTLESYRRDLEGLARWRDGAGGGLLGIDRAVLFDY------LRWR 81

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  RS  R LS +++F     +  + ++     +   +   SLP+AL E Q   L+
Sbjct: 82  TRANYSPRSTARLLSTLRAFYGLCLRDGVRSDDPTALIDPPQLPRSLPKALTESQIEALL 141

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
               L T         R+ A+L L+Y  GLR+SE ++L    +   Q  LR+ GKG K R
Sbjct: 142 AAPDLDT-----LAGLRDRAMLELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDR 196

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNI-------QLPLFRGIRGKPLNPGVFQRYIRQLR 251
           +VPL    +  +  Y       L  N        Q+PLF  +  +PL+   F   +++  
Sbjct: 197 LVPLGEESQHWLERYLREARPLLAANKPVTAVDGQVPLFIDVSRQPLSRQQFWALVKRYA 256

Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              G+ P + + H LRHSFATHLL++G DLR++Q +LGH  LSTTQIYT V  ++    +
Sbjct: 257 AAAGIDPATVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQH----L 312

Query: 311 MEIYDQTHP 319
            +++   HP
Sbjct: 313 QKLHASHHP 321


>gi|221211426|ref|ZP_03584405.1| tyrosine recombinase XerD [Burkholderia multivorans CGD1]
 gi|221168787|gb|EEE01255.1| tyrosine recombinase XerD [Burkholderia multivorans CGD1]
          Length = 316

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 140/297 (47%), Gaps = 19/297 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E GL++ TL +Y  D   F  +LA   +  +          T +  +I+ R   K  
Sbjct: 35  LWLEHGLARNTLDAYRRDLTLFSQWLAATHDAALDAA-----DETMLTGYIAARSDGKA- 88

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R LS  + +  +  +    +    L + + K++   P  L+E Q   L+    + 
Sbjct: 89  -TSSNRRLSVFRRYYGWAVREHRASADPTLRIASAKQAARFPSTLSEAQVEALLGAPDIA 147

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           T      +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+VP   
Sbjct: 148 TP-----LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPF-G 201

Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            V    +E Y  +  P  L       LF   RG  +    F   I++  +   +    + 
Sbjct: 202 EVAHGWIERYLREARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSP 261

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++ Q HP
Sbjct: 262 HTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER----LRTLHAQHHP 314


>gi|221633040|ref|YP_002522265.1| tyrosine recombinase xerD [Thermomicrobium roseum DSM 5159]
 gi|221155467|gb|ACM04594.1| tyrosine recombinase xerD [Thermomicrobium roseum DSM 5159]
          Length = 331

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 134/281 (47%), Gaps = 10/281 (3%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  +  ERGLS  T+ +Y  D  QF    A Y  E+  ++   +L    + AF+   
Sbjct: 23  EEFLTGVVRERGLSPNTIAAYRNDLEQF----ANYVAERFGLRDWSELVSEHLEAFLGYL 78

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R ++  + +  R L+ IKSF  YL +  +   +    +   +     PRA+  K+    V
Sbjct: 79  RDRQYAETTAARKLAAIKSFCHYLVRAGLIGANPADGLPVPRVGRFAPRAIGPKE----V 134

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           + ++   S +      R+ A+L  L   GLR+SE  +L  +++  D+  L ++    + R
Sbjct: 135 EQLIAAASSDRTPEGLRDRAMLITLATTGLRVSELTALDVRDVDLDRGELIVRRPNGRER 194

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL     +A+ +Y +   P    L  +  LF   RG  L    F   ++      GLP
Sbjct: 195 VVPLAREAIEALRDYLERGRPGFTTLKGEQALFLNHRGSRLTRQGFWLILKNYAAAAGLP 254

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              T HTLRHSFA   L +G DLR +Q +LGH   +TTQ+Y
Sbjct: 255 -EVTPHTLRHSFAVRALVDGWDLRDLQRVLGHVSPATTQVY 294


>gi|144897317|emb|CAM74181.1| Tyrosine recombinase xerD [Magnetospirillum gryphiswaldense MSR-1]
          Length = 306

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 149/320 (46%), Gaps = 43/320 (13%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           + ++ +L+ + +ER  +  TL +Y  D      +L       ++ +      Y  +RA  
Sbjct: 5   RHKEAFLEMMAVERAAAINTLDAYRRDLDDLDNYLTKRGGAPLSARPADLAGY--MRALA 62

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                  +  R+  R LS ++ F  ++       +     +   +   SLP+ L+EKQ  
Sbjct: 63  D----AGMATRTQARRLSCLRQFYGFVFAEGWRADDPTSRLDAPRLGRSLPKYLSEKQVG 118

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+D      S + + +    +A+L LLY  GLR+SE + L    +  D + L ++GKGD
Sbjct: 119 DLLDAARALESPQGEMM----TALLELLYATGLRVSELVGLPYSAVARDPALLVVRGKGD 174

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-----LNPGV-------- 242
           K R+VPL    R A             L + LPL + + GK      L PG         
Sbjct: 175 KERMVPLSDPARAA-------------LRVWLPLRQDLLGKKKTSRWLFPGSGKTGHLTR 221

Query: 243 --FQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
             F R + ++    G+ P   + H LRH+FATHLL++G DLR +Q +LGH  ++TT+IYT
Sbjct: 222 AGFARALLRVGMKAGIDPRRLSPHVLRHAFATHLLAHGADLRVVQELLGHADIATTEIYT 281

Query: 300 NVNSKNGGDWMMEIYDQTHP 319
           +V  +      + + +Q HP
Sbjct: 282 HVLEEP----KVRLVNQHHP 297


>gi|332716418|ref|YP_004443884.1| tyrosine recombinase xerD [Agrobacterium sp. H13-3]
 gi|325063103|gb|ADY66793.1| tyrosine recombinase xerD [Agrobacterium sp. H13-3]
          Length = 331

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 150/325 (46%), Gaps = 33/325 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L+ +  ERG +  TL SYE D      FL          Q++ + +  ++ A+++  
Sbjct: 15  ESFLEMMSAERGAAANTLSSYERDLSDLREFLGGRG------QSLMEAATADLSAYLTHL 68

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            TQ     S  R LS ++ F ++L    +  +     +   KK  +LP+ ++      L+
Sbjct: 69  STQGFAATSQARRLSSMRQFYRFLYSEGLRGDDPTGTIDAPKKGLTLPKTMSVADVTKLL 128

Query: 139 ----DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
               +   L    +   I  R   +L LLY  G+R+SE +SL  + +  +   L I+GKG
Sbjct: 129 GIAAEEAALTGPGQLARI--RMHLLLELLYATGMRVSELVSLPVKVLRQEGRFLMIRGKG 186

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNP------------- 240
           +K R+V LL       +E YD     L     + P        P +P             
Sbjct: 187 NKDRMV-LLSRAAIEAMEKYDAARKSLVPEKSRTPASPKKADSPESPWLFPSNSKEGHLP 245

Query: 241 -GVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             VF R ++ +    GL P + + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIY
Sbjct: 246 RQVFARDLKDIAIRAGLNPSAVSPHVLRHAFASHLLQNGADLRAVQELLGHSDISTTQIY 305

Query: 299 TNVNSKNGGDWMMEIYDQTHPSITQ 323
           T+V  +     + E+    HP   Q
Sbjct: 306 THVLEER----LQELVQTHHPLAKQ 326


>gi|309811471|ref|ZP_07705253.1| phage integrase, N-terminal SAM domain protein [Dermacoccus sp.
           Ellin185]
 gi|308434522|gb|EFP58372.1| phage integrase, N-terminal SAM domain protein [Dermacoccus sp.
           Ellin185]
          Length = 352

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/177 (37%), Positives = 101/177 (57%), Gaps = 15/177 (8%)

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
           E + + AR++A+L LLY  G+R+ E  SL    + +    +R+ GKG K R+VP     R
Sbjct: 184 EERAVRARDAAVLELLYASGMRVGELASLDVSALDEANQLVRVMGKGRKERMVPYGLPAR 243

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-----RRYLGLPLSTTA 262
           +A LE +  C   L  + +  LF G+RG+ ++    QR +R+L         G P + + 
Sbjct: 244 EA-LERWLRCRGALAADGERALFVGVRGRRID----QRIVRELVNRATASVDGAP-TLSP 297

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           H LRHS ATHL+  G DLR++Q  LGH  L+TTQIYT+V+++     +   ++Q HP
Sbjct: 298 HALRHSAATHLVEGGADLRTVQEYLGHASLATTQIYTHVSAER----LRAGFEQAHP 350


>gi|188590854|ref|YP_001795454.1| site-specific tyrosine recombinase xerc [Cupriavidus taiwanensis
           LMG 19424]
 gi|170937748|emb|CAP62732.1| site-specific tyrosine recombinase [Cupriavidus taiwanensis LMG
           19424]
          Length = 349

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 151/325 (46%), Gaps = 50/325 (15%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +WL+     R L++ TL  Y    R+  +  A   +    +  +  L    IR F ++  
Sbjct: 24  DWLRG---SRKLAEHTLSGY---ARELRVLQAHAAQHAPGVALL-ALQTHHIRNFAARLH 76

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLV 138
              +   S+ R+LS  + F  +  +       N ++ +R  +  ++LP+AL+ + A+ LV
Sbjct: 77  AAGLVGTSIGRALSAWRGFYLWAARHGHGVSVNPVDGVRAPRSGHALPKALSVEHAVALV 136

Query: 139 DNVLLHTSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMDDQ---------- 185
                  +H     DA   R+ A+  L Y  GLR+SE + L  +    D           
Sbjct: 137 -------AHPAG-TDAEALRDQAVYELFYSSGLRLSELVQLDLRYAEADGYRSSGWLDLA 188

Query: 186 -STLRIQGKGDKIRIVPLLP----------SVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
            + + + GKG + R VP+            +VR  +L      P D +      LF G R
Sbjct: 189 GAEVTVTGKGSRRRTVPVGGRAIAALQAWLAVRDGLLRP-GAAPEDAHA-----LFLGPR 242

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G+ L+    Q  ++Q     G+P     H LRHSFATH+L + GDLR++Q +LGH  +ST
Sbjct: 243 GRRLSMRTVQLRLKQQALRAGVPADVHPHMLRHSFATHMLQSSGDLRAVQEMLGHASIST 302

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHP 319
           TQ+YT ++ ++    + ++YD+ HP
Sbjct: 303 TQVYTALDFQH----LAKVYDKAHP 323


>gi|125973246|ref|YP_001037156.1| site-specific tyrosine recombinase XerC [Clostridium thermocellum
           ATCC 27405]
 gi|256003724|ref|ZP_05428712.1| integrase family protein [Clostridium thermocellum DSM 2360]
 gi|281417446|ref|ZP_06248466.1| integrase family protein [Clostridium thermocellum JW20]
 gi|125713471|gb|ABN51963.1| phage integrase [Clostridium thermocellum ATCC 27405]
 gi|255992285|gb|EEU02379.1| integrase family protein [Clostridium thermocellum DSM 2360]
 gi|281408848|gb|EFB39106.1| integrase family protein [Clostridium thermocellum JW20]
 gi|316940523|gb|ADU74557.1| integrase family protein [Clostridium thermocellum DSM 1313]
          Length = 330

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 159/305 (52%), Gaps = 31/305 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA--FYTEEK-----------ITIQTIRQ 65
           +++L  +E  RG SK T+  Y  D R F  F+   F  E+            + I  I++
Sbjct: 14  KDFLSYMETIRGKSKNTIHEYYYDLRLFFRFMKIHFGLEDSKKDFDSIDIKDMDIDVIKK 73

Query: 66  LSYTEI---RAFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKK 121
           ++ ++I    +F+S+ R      R+  R ++ I+SF  YL  K K+  ++    + + K 
Sbjct: 74  ITLSDIYSFMSFLSRERDNTASSRA--RKVASIRSFFNYLTNKAKLLEQNPAAELESPKI 131

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              LPR LN +++  L+ ++     H+      R+ AI+ L   CGLR+SE +++   NI
Sbjct: 132 MKRLPRYLNIEESKRLLGSI--DGEHKE-----RDFAIITLFLNCGLRLSELVNINLSNI 184

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
            +D   L + GKG+K R + L  + +KA+  Y  + P D  +  +  LF   R + ++  
Sbjct: 185 KND--VLTVVGKGNKERTIYLNAACKKALDAYLKVRPVD-GVKDKNALFLSSRKQRISNK 241

Query: 242 VFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYT 299
             Q  +++  +  GL P   + H LRH+ AT +  +G  D+R++Q ILGH  ++TT+IYT
Sbjct: 242 TVQHIVKKYIKAAGLDPERYSTHKLRHTAATLMYKHGNVDIRALQEILGHESIATTEIYT 301

Query: 300 NVNSK 304
           +V+S+
Sbjct: 302 HVDSQ 306


>gi|257094620|ref|YP_003168261.1| tyrosine recombinase XerD [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257047144|gb|ACV36332.1| tyrosine recombinase XerD [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 304

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/308 (30%), Positives = 149/308 (48%), Gaps = 19/308 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI-TIQTIRQLSYTEIRA 73
           L E   +   L +E GL+K +L SY  D  Q   +LA   E+++ ++  I + +     A
Sbjct: 11  LAEIDAFCDTLWLEDGLAKASLSSYRSDLGQLAGWLA---EQRLGSLCGIDEATLLRFVA 67

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            ++    Q +   S  R LS ++ F ++       +    L +    K + LP+ L+E Q
Sbjct: 68  TLA----QTLRASSQARYLSTLRRFYRHQVAHGRRSSDPTLRIAMPVKPSRLPKVLSELQ 123

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
               V+ +L     ET  +  R+ A+L  LY  GLR+SE + L    +  D   +R+ GK
Sbjct: 124 ----VERLLGAPPSETP-LGQRDRAMLETLYATGLRVSELVGLKLHEVSLDMGVVRVFGK 178

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRR 252
           G K R+VPL    R  +  +       L    Q   +F   RG  +    F + I++   
Sbjct: 179 GAKERLVPLGEEARDWLRRHLADGRLALLAGRQSDDVFVTARGAAMTRQAFWQLIKRYAL 238

Query: 253 YLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             G+ P   + H LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     + 
Sbjct: 239 QAGMDPARLSPHVLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LK 294

Query: 312 EIYDQTHP 319
            ++ Q HP
Sbjct: 295 ILHAQHHP 302


>gi|38233776|ref|NP_939543.1| site-specific tyrosine recombinase XerD [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200037|emb|CAE49713.1| integrase/recombinase [Corynebacterium diphtheriae]
          Length = 311

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 152/319 (47%), Gaps = 37/319 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + WL +L +E+G+S  TL +Y  D  ++  +L         I  I  +S  +I  ++ + 
Sbjct: 9   RQWLTHLAVEKGVSDNTLSNYRRDLERYTRWLQVQG-----ITDIENISAQDIERYVQEL 63

Query: 79  RTQKIGDRSLKRS-------------LSGIKSF--LKYLKKRKITTESNILNMRNLKKSN 123
           R    GD    +                G+  F  L+ L +  ++ + +   M       
Sbjct: 64  RK---GDSDTGKKPLAASSAARALIVARGLHRFALLENLVENDVSADVSPPAM-----GR 115

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--- 180
            LP  L+ ++   L++ + +  +   +  + R+ A+L  LY  G RISEA+ L   +   
Sbjct: 116 HLPDTLSVEEVNRLIEAIPIDDAASPE--NLRDCALLEFLYATGARISEAVGLVVDDVAA 173

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I++++  +RI GKG+K RIVP+      A+  Y       ++      LF   RG  L+ 
Sbjct: 174 IVENEGIVRITGKGNKQRIVPVGDQCLSALERYVVRSRPAMSKGKSHALFLNKRGGQLSR 233

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               + ++   +  G+    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT+
Sbjct: 234 QSAWQILKNSAQRAGIEKDISPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTH 293

Query: 301 VNSKNGGDWMMEIYDQTHP 319
           V + N    +  ++ ++HP
Sbjct: 294 VTADN----LRFVWSRSHP 308


>gi|166713420|ref|ZP_02244627.1| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 323

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 145/309 (46%), Gaps = 23/309 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L     E+G+++ TL+SY  D      +        + I       Y   RA     
Sbjct: 28  ERFLDRFWAEQGVARQTLESYRRDLEGLARWRDGAGGGLLGIDRAALFDYLRWRA----- 82

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  RS  R LS +++F  +  +  + ++     +   +   SLP+AL E Q    +
Sbjct: 83  -QATYSPRSTARLLSTLRAFYGWCLRDGVRSDDPTALIDPPQLPRSLPKALTESQ----I 137

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           + +L     +T     R+ A+L L+Y  GLR+SE ++L    +   Q  LR+ GKG K R
Sbjct: 138 EALLAAPEVDTP-AGLRDRAMLELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDR 196

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNI-------QLPLFRGIRGKPLNPGVFQRYIRQLR 251
           +VPL    +  +  Y       L  N        Q+PLF     + L+   F   +++  
Sbjct: 197 LVPLGEESQHWLERYLRQARPLLAANKPVAAVDGQVPLFIDAARQALSRQHFWALVKRYA 256

Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              G+ P + + H LRHSFATHLL++G DLR++Q +LGH  LSTTQIYT V  ++    +
Sbjct: 257 AVAGIDPATVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQH----L 312

Query: 311 MEIYDQTHP 319
            +++   HP
Sbjct: 313 QKLHASHHP 321


>gi|118586872|ref|ZP_01544306.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163]
 gi|118432704|gb|EAV39436.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163]
          Length = 302

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 156/304 (51%), Gaps = 22/304 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++ + L  ERGL + +++SY+ D  +F    A+  +E I +  + + +   I  +++  +
Sbjct: 14  DYTRYLRTERGLLENSIKSYKQDLSEFG---AYIQKENILLVKVDRFT---ILDWLNYLQ 67

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN--EKQALTL 137
                + S+   +S ++ F  YL   +      +L +   KK++ LP+ L   E +A+  
Sbjct: 68  NSGKSNNSIVHMVSSLRKFFAYLSDDQQIQIDPMLKVTTPKKNSHLPQVLTATEIEAVLA 127

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           V ++       +  +  RN A+L  +Y  G R+SE  +L   ++ D+   +   GKG K 
Sbjct: 128 VPDI-------STTLGLRNRALLETMYATGFRVSEICNLKLADLHDELGLITTIGKGQKQ 180

Query: 198 RIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYLG 255
           RIVP+       I +Y+    P  L       LF    G  ++  G+F + ++++    G
Sbjct: 181 RIVPIGEMSLLYISKYFKESRPILLKDKESPYLFLNDHGHRISRQGIF-KLVKEIAIKAG 239

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + HTLRHSFAT+LL NG DLR +Q +LGH  +STTQIYT+V+ K+    + E Y+
Sbjct: 240 IDKDISPHTLRHSFATNLLENGADLRIVQELLGHSDISTTQIYTHVSQKH----IREQYN 295

Query: 316 QTHP 319
           + HP
Sbjct: 296 RFHP 299


>gi|121608682|ref|YP_996489.1| tyrosine recombinase XerD [Verminephrobacter eiseniae EF01-2]
 gi|121553322|gb|ABM57471.1| tyrosine recombinase XerD [Verminephrobacter eiseniae EF01-2]
          Length = 303

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 150/301 (49%), Gaps = 19/301 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L  L +E GL++ TL +Y  D  ++    A +   +     +   +   ++A+ + R  Q
Sbjct: 11  LDALWLEDGLARNTLAAYRSDLTRY----AQWLHAQQPAVALDDTAEHHLQAYFAARHAQ 66

Query: 82  KIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                S  R L+ ++ +  + L++R+I+ +     +   +    +P+ + E Q       
Sbjct: 67  TRAT-SANRRLTVLRRYFHWALRERRISADPTA-RLAAARVPLRVPKTMTETQV-----E 119

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL        +  R+ A+L L+Y  GLR++E + L   ++  D++ LR+ GKG K R++
Sbjct: 120 ALLQAPDPGTPLGLRDRAMLELMYASGLRVTELVGLKTFHLALDENLLRVTGKGGKERLL 179

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           P      +  LE Y      + L  Q    LF   RG  +   +F   ++Q  R  G+ +
Sbjct: 180 PFGVEAGQ-WLERYLQQARGVILGGQRTDDLFVTRRGCGMTRVMFWIIVKQWARVAGITV 238

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HTLRH+FATHLL++G DLR +Q +LGH  +STT IYT+V  +     + +++D+ H
Sbjct: 239 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARQR----LKQLHDEHH 294

Query: 319 P 319
           P
Sbjct: 295 P 295


>gi|171320434|ref|ZP_02909468.1| tyrosine recombinase XerD [Burkholderia ambifaria MEX-5]
 gi|171094319|gb|EDT39392.1| tyrosine recombinase XerD [Burkholderia ambifaria MEX-5]
          Length = 320

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 141/297 (47%), Gaps = 19/297 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E GL++ TL +Y  D   F  +LA      + + +  +     +  +I+ R   K  
Sbjct: 39  LWLEHGLARNTLDAYRRDLVLFSQWLA--ATHDVPLDSADE---AMLIGYIAARSDGKA- 92

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R LS  + +  +  +    +    L + + K++   P  L+E Q   L+    + 
Sbjct: 93  -TSSNRRLSVFRRYYGWAVREHHASADPTLRITSAKQAARFPSTLSEAQVEALLGAPDIG 151

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           T      +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+VP   
Sbjct: 152 TP-----LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPF-G 205

Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            V    +E Y  D  P  L       LF   RG  +    F   I++  R   +    + 
Sbjct: 206 EVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHARQADVRAHLSP 265

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++ Q HP
Sbjct: 266 HTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LRTLHAQHHP 318


>gi|163803624|ref|ZP_02197489.1| tyrosine recombinase [Vibrio sp. AND4]
 gi|159172572|gb|EDP57432.1| tyrosine recombinase [Vibrio sp. AND4]
          Length = 313

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 158/312 (50%), Gaps = 16/312 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L K  Q + + L  E+GLS  T ++Y    +Q L  +A +  E + ++   Q+  + +R 
Sbjct: 13  LQKPLQRFYEFLRSEKGLSLHTQRNY----KQQLETMAQHLVE-MGLKDWSQVDASWVRQ 67

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
              K   + +   S+   LS ++SF  +L  R   + +    +   +K   LP+ L+  +
Sbjct: 68  LAGKGMREGMKASSVATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDE 127

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++       +E   +  R+ A++ L+YG GLR++E +S+  ++I      LR+ GK
Sbjct: 128 VSQLLE------VNEGDALAVRDRAMMELMYGAGLRLAELVSVDMRDIQLRSGELRVIGK 181

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GDK R VP      + + ++  +   D+    +  LF    G  ++    Q+ + Q  + 
Sbjct: 182 GDKERKVPFSGMATEWVGKWLRVR-GDIAAPGEPALFVSKLGTRISHRSVQKRMAQWGQK 240

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ ++    + + 
Sbjct: 241 QSVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQH----LAQA 296

Query: 314 YDQTHPSITQKD 325
           YDQ HP   +K+
Sbjct: 297 YDQAHPRARKKN 308


>gi|94309464|ref|YP_582674.1| site-specific tyrosine recombinase XerD [Cupriavidus metallidurans
           CH34]
 gi|93353316|gb|ABF07405.1| tyrosine-based site-specific recombinase [Cupriavidus metallidurans
           CH34]
          Length = 302

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 144/297 (48%), Gaps = 17/297 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E GL++ T+ +Y    R+ L  LA +  E  T   +  +  T +  + + R  +   
Sbjct: 19  LWLEDGLARNTIDAY----RRDLAMLARWLHESGTTALL-GVDDTALSGYFAARHLETRA 73

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R L+  + F ++  +  +      L +R  K+    P+ L+E Q + L++   + 
Sbjct: 74  S-SANRRLTVFRRFYQWALREHMIEADPCLLLRPAKQPPRFPKTLSEAQVVALLEAPDIE 132

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLL 203
           T      +  R+  +L L+Y  GLR+SE  ++    +  ++   R+  GKG+K R+VP  
Sbjct: 133 TP-----LGLRDRTMLELMYASGLRVSELTNMKTIEVGLNEGVARVVGGKGNKERLVPFG 187

Query: 204 PSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
                 +  Y  D  P  L       LF   RG+ +    F   I++  R  G+    + 
Sbjct: 188 AQAGDWLHRYLSDARPTLLAGRACDELFVTQRGEGMTRQTFWHLIKKHARDAGIHAPLSP 247

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     + E++   HP
Sbjct: 248 HTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER----LRELHLHHHP 300


>gi|260596035|ref|YP_003208606.1| site-specific tyrosine recombinase XerC [Cronobacter turicensis
           z3032]
 gi|260215212|emb|CBA27069.1| Tyrosine recombinase xerC [Cronobacter turicensis z3032]
          Length = 306

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 144/298 (48%), Gaps = 17/298 (5%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L++ER LS +TL +YE   RQ    +    E    +++  Q     +R    + R  
Sbjct: 19  LRYLKVERQLSPVTLLNYE---RQLAAIVGLAGEA--GLKSWAQCDAAMVRTLAVRSRRA 73

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +G  SL   LS ++SF  +   +     +    +   K    LP+ ++      L+D  
Sbjct: 74  GLGPSSLALRLSALRSFFDWQVSQGELKANPAKGVSTPKTPRHLPKNIDVDDVNRLLDID 133

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           L         +  R+ A+L ++YG GLR+SE +++  +++      + + GKG K R +P
Sbjct: 134 L------NDPLAVRDRAMLEIMYGAGLRLSELVNIDCRHLDLASGEVWVMGKGSKERRLP 187

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           +  S    I  + +L   +L       LF   +GK ++    Q+   +     GL     
Sbjct: 188 IGRSAVAWIDHWLNL--RELFGPDDDALFLSKQGKRISARNVQKRFAEWGIKQGLNSHVH 245

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++    +  +YD  HP
Sbjct: 246 PHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 299


>gi|34222917|sp|Q8PGR5|XERD_XANAC RecName: Full=Tyrosine recombinase xerD
 gi|21109924|gb|AAM38394.1| integrase-recombinase XerD [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 305

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 147/309 (47%), Gaps = 23/309 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L     E+G+++ TL+SY  D    L  LA + +       +  +    +  ++  R
Sbjct: 10  ERFLDRFWAEQGVARQTLESYRRD----LEGLARWRDG--AGGGLLGIDRAALFDYLRWR 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  RS  R LS +++F     +    ++     +       SLP+AL E Q   L+
Sbjct: 64  TRANYSPRSTARLLSTLRAFYGLCLRDGARSDDPTALIDPPHLPRSLPKALTESQIEALL 123

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
               L T         R+ A+L L+Y  GLR+SE ++L    +   Q  LR+ GKG K R
Sbjct: 124 AAPDLDTP-----AGLRDRAMLELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDR 178

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNI-------QLPLFRGIRGKPLNPGVFQRYIRQLR 251
           +VPL    +  +  Y       L  N        Q+PLF  +  +PL+   F   +++  
Sbjct: 179 LVPLGEESQHWLERYLREARPLLAANKPVAAVDGQVPLFIDVSRQPLSRQQFWALVKRYA 238

Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              G+ P + + H LRHSFATHLL++G DLR++Q +LGH  LSTTQIYT V  ++    +
Sbjct: 239 AVAGIDPATVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQH----L 294

Query: 311 MEIYDQTHP 319
            +++   HP
Sbjct: 295 QKLHASHHP 303


>gi|218710942|ref|YP_002418563.1| site-specific tyrosine recombinase XerC [Vibrio splendidus LGP32]
 gi|254799361|sp|B7VMD2|XERC_VIBSL RecName: Full=Tyrosine recombinase xerC
 gi|218323961|emb|CAV20323.1| Integrase/recombinase XerC [Vibrio splendidus LGP32]
          Length = 310

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 148/302 (49%), Gaps = 16/302 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  E+GLS  T ++Y+         L       + ++   Q+    +R   SK   + + 
Sbjct: 24  LRSEKGLSLHTQRNYKQQLETMAAHLV-----TLGLKDWSQVDAAWVRQLASKGMREGMK 78

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S+   LS ++SF  +L  R   T +    +   +K   LP+ L+  +   L+D     
Sbjct: 79  ASSIATRLSSLRSFFDFLVLRGEMTANPAKGVSAPRKQRPLPKNLDVDEVGQLLD----- 133

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
             +E   +  R+ A++ ++YG GLR++E + +  ++++  Q  +R+ GKGDK R  P   
Sbjct: 134 -VNEDDPLSIRDRAMMEVMYGAGLRLAELVGINLKDVLGRQGEIRVIGKGDKERKAPF-S 191

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            + K  ++ +      L    +  LF    G  ++    Q+ + +  +   +    + H 
Sbjct: 192 GLAKEWVDKWLKVRGALASPGETALFVSKLGTRISHRSVQKRMEEWGKKQSVASHISPHK 251

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LRHSFATH+L +  +LR++Q +LGH  +STTQ+YT+++ ++    + + YDQ HP   +K
Sbjct: 252 LRHSFATHVLESSQNLRAVQELLGHENISTTQVYTHLDFQH----LAQAYDQAHPRARKK 307

Query: 325 DK 326
           +K
Sbjct: 308 NK 309


>gi|120600505|ref|YP_965079.1| tyrosine recombinase XerC [Shewanella sp. W3-18-1]
 gi|146294663|ref|YP_001185087.1| tyrosine recombinase XerC [Shewanella putrefaciens CN-32]
 gi|166918902|sp|A4YBF5|XERC_SHEPC RecName: Full=Tyrosine recombinase xerC
 gi|166918903|sp|A1RPD0|XERC_SHESW RecName: Full=Tyrosine recombinase xerC
 gi|120560598|gb|ABM26525.1| tyrosine recombinase XerC [Shewanella sp. W3-18-1]
 gi|145566353|gb|ABP77288.1| tyrosine recombinase XerC [Shewanella putrefaciens CN-32]
 gi|319427899|gb|ADV55973.1| tyrosine recombinase XerC [Shewanella putrefaciens 200]
          Length = 302

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 157/309 (50%), Gaps = 20/309 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q++ + L  ER LS  T+ +Y  +  +    L     + +T+  + +  + ++   ++K 
Sbjct: 13  QDYERYLHSERQLSAHTVHNYLYELNRVSTLLP----KDVTLLNVGREHWQQV---LAKL 65

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +  RSL   LS IK + ++L +  +   +    +   K++  LP+ ++      L+
Sbjct: 66  HRKGLSPRSLSLCLSAIKQWGEFLLREGMIAVNPAKGLSAPKQAKPLPKNMDVDSLTHLL 125

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +         T  +  R+ A++ L Y  GLR++E  +L   ++  D   +R+ GKG+K R
Sbjct: 126 E------IEGTDPLTLRDKAMMELFYSSGLRLAELAALNLSSVQYDLREVRVLGKGNKER 179

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVP+     KA LE + +C   +       LF   +G+ L+    Q  + +  +   L +
Sbjct: 180 IVPVGSYAIKA-LEAWLVCRQQIPCE-DCALFVTGKGRRLSHRSIQSRMAKWGQEQALSV 237

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRHSFATH+L +  DLR++Q +LGH  LSTTQIYT+++ ++    + ++YD  H
Sbjct: 238 RVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQIYTSLDFQH----LAKVYDSAH 293

Query: 319 P-SITQKDK 326
           P +  Q+DK
Sbjct: 294 PRAKKQQDK 302


>gi|104774158|ref|YP_619138.1| site-specific recombinase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116514251|ref|YP_813157.1| integrase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|122275017|sp|Q04A03|XERC_LACDB RecName: Full=Tyrosine recombinase xerC
 gi|123378433|sp|Q1G9V2|XERC_LACDA RecName: Full=Tyrosine recombinase xerC
 gi|103423239|emb|CAI98072.1| Site-specific recombinase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116093566|gb|ABJ58719.1| tyrosine recombinase XerC subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 295

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 141/286 (49%), Gaps = 12/286 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L+ ER  S  T+ +Y+ D    L     + +E        Q+S  ++  ++   
Sbjct: 5   EQFLSYLKNERSYSPKTVLAYQKD----LAAAKKFWQENGGFPGWDQISRRDLEIYLLAT 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             QK+   +L R LS +KSF ++L +R +      + ++  +    LP    + +   ++
Sbjct: 61  -GQKLASSTLSRKLSSLKSFYRFLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQVI 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            ++     ++ K +  RN AI+ L Y  G+R+SE   L  + +  +   + + GKG+K R
Sbjct: 120 RSL-----NDGKPLTVRNRAIVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDR 174

Query: 199 IVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            V      +K + EY       L  N      +F    G+P++     + ++Q+ +  GL
Sbjct: 175 YVFFDQESKKYLEEYLQAARPSLLKNEPDTGAVFLNKLGRPISSRGIAKAVQQIFQKAGL 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                 H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V+
Sbjct: 235 TAGAHPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVS 280


>gi|161485706|ref|NP_643858.2| site-specific tyrosine recombinase XerD [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 323

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 147/309 (47%), Gaps = 23/309 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L     E+G+++ TL+SY  D    L  LA + +       +  +    +  ++  R
Sbjct: 28  ERFLDRFWAEQGVARQTLESYRRD----LEGLARWRDG--AGGGLLGIDRAALFDYLRWR 81

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  RS  R LS +++F     +    ++     +       SLP+AL E Q   L+
Sbjct: 82  TRANYSPRSTARLLSTLRAFYGLCLRDGARSDDPTALIDPPHLPRSLPKALTESQIEALL 141

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
               L T         R+ A+L L+Y  GLR+SE ++L    +   Q  LR+ GKG K R
Sbjct: 142 AAPDLDTP-----AGLRDRAMLELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDR 196

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNI-------QLPLFRGIRGKPLNPGVFQRYIRQLR 251
           +VPL    +  +  Y       L  N        Q+PLF  +  +PL+   F   +++  
Sbjct: 197 LVPLGEESQHWLERYLREARPLLAANKPVAAVDGQVPLFIDVSRQPLSRQQFWALVKRYA 256

Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              G+ P + + H LRHSFATHLL++G DLR++Q +LGH  LSTTQIYT V  ++    +
Sbjct: 257 AVAGIDPATVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQH----L 312

Query: 311 MEIYDQTHP 319
            +++   HP
Sbjct: 313 QKLHASHHP 321


>gi|325954362|ref|YP_004238022.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922]
 gi|323436980|gb|ADX67444.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922]
          Length = 301

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 155/310 (50%), Gaps = 16/310 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L  L+ E+  S  T+++Y  D   FL   +FY  E+ +  +I +     IR+FI   
Sbjct: 5   QRFLDYLQYEKRYSLHTIKNYRRDLDDFL---SFYQIEESS-DSIEKAEKNHIRSFIISL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALT 136
             + I +RS+ R LS +++F  YL K    T S +L +++LK  K   +P    E Q L 
Sbjct: 61  SDKNISERSINRKLSSLRTFYIYLIKTGQLTTSPMLQIKSLKTKKEVIIPYTEKEMQRLF 120

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
            ++N+         +   R+  ++ L Y  G+R  E + LT   +  +Q  +++ GK +K
Sbjct: 121 ELENIF-----PDDFDGIRDRLMMNLFYQTGIRRGELIQLTLPQLRIEQKEIKVLGKRNK 175

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R++P+  ++      Y  +   ++  +  L LF    G+ L        +     ++  
Sbjct: 176 ERVLPIGENLVSEFTRYLKVRK-EVVGSENLTLFIKNNGQALYEKFVYERVNYYLSFITE 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FAT LL NG DL +++ ILGH  LS+TQIYT+ + +N    + ++++ 
Sbjct: 235 KHKKSPHVLRHTFATQLLENGADLNALKEILGHSSLSSTQIYTHSSIQN----LKKVFNN 290

Query: 317 THPSITQKDK 326
            HP   +KD+
Sbjct: 291 AHPRGRKKDE 300


>gi|116872710|ref|YP_849491.1| integrase/recombinase XerC [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123463735|sp|A0AI80|XERC_LISW6 RecName: Full=Tyrosine recombinase xerC
 gi|116741588|emb|CAK20712.1| integrase/recombinase XerC [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 300

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 145/309 (46%), Gaps = 21/309 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q +L  L  ER  S  T  +YE D   F  FL      +  I   +Q+++ ++R ++
Sbjct: 6   KLEQQFLNYLHSERNYSVNTSTAYENDILDFRRFL-----NEQAISEYQQVTFLDVRIYL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++ + +     ++ R +S ++SF  +L +  + +E+    + + K    LP+    ++  
Sbjct: 61  TELKQKSFSRTTVARKISSLRSFYTFLLRENVISENPFTYVSHAKNQLRLPKFFYSEEME 120

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L   V      + + +  R+  +L +LYG G+R+SE   +   ++      + I+GKG+
Sbjct: 121 ALFQVVY----EDNETLTLRDRVLLEVLYGTGIRVSECAGILLSDLDTSYQAILIRGKGN 176

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVFQRYIRQL 250
           K R VP       AI +Y         L I+       L     G PL     +  + ++
Sbjct: 177 KERYVPFGAYAEDAITDY---LSSRTELMIRFKKEHDSLLINHYGDPLTTRGIRYCLTKI 233

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                L      H LRH+FAT LL+NG D+R++Q +LGH  LS+TQIYT+V  ++    +
Sbjct: 234 ISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----L 289

Query: 311 MEIYDQTHP 319
              Y + HP
Sbjct: 290 KSTYMKHHP 298


>gi|304412533|ref|ZP_07394139.1| tyrosine recombinase XerC [Shewanella baltica OS183]
 gi|307307192|ref|ZP_07586930.1| tyrosine recombinase XerC [Shewanella baltica BA175]
 gi|304349175|gb|EFM13587.1| tyrosine recombinase XerC [Shewanella baltica OS183]
 gi|306910431|gb|EFN40862.1| tyrosine recombinase XerC [Shewanella baltica BA175]
          Length = 306

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 153/316 (48%), Gaps = 33/316 (10%)

Query: 21  WLQNLE----IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           WLQ  E     ER LS  T+++Y  +  +    L     E + +  + +  + ++   ++
Sbjct: 15  WLQTFERYLSTERQLSAHTVRNYLYELNRGSDLLP----EGVHLLNVSREHWQQV---LA 67

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           K   + +  RSL   LS +K + ++L +  +   +    +   K++  LP+ ++      
Sbjct: 68  KLHRKGLSPRSLSLCLSAVKQWGEFLLREGVIELNPAKGLSAPKQAKPLPKNIDVDAISH 127

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+D         T  +  R+ A++ L Y  GLR++E  +L   ++  D   +R+ GKG+K
Sbjct: 128 LLD------IEGTDPLSLRDKAMMELFYSSGLRLAELAALNLSSVQYDLKEVRVLGKGNK 181

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLR 251
            RIVP+      A+L +       LN   Q+P     LF   +GK L+    Q  + +  
Sbjct: 182 ERIVPVGRLAIAALLNW-------LNCRKQIPCEDNALFVTEKGKRLSHRSIQARMAKWG 234

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +   L +    H LRHSFATH+L    DLR++Q +LGH  L+TTQIYT+++ ++    + 
Sbjct: 235 QEQALSVRVHPHKLRHSFATHMLEASADLRAVQELLGHANLATTQIYTSLDFQH----LA 290

Query: 312 EIYDQTHPSITQKDKK 327
           ++YD  HP   +   K
Sbjct: 291 KVYDNAHPRAKKTQDK 306


>gi|163814162|ref|ZP_02205554.1| hypothetical protein COPEUT_00316 [Coprococcus eutactus ATCC 27759]
 gi|158450611|gb|EDP27606.1| hypothetical protein COPEUT_00316 [Coprococcus eutactus ATCC 27759]
          Length = 292

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 150/289 (51%), Gaps = 18/289 (6%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T+ SY    R  + F+A++ ++ +    +  ++ T I +++       +   ++ R+
Sbjct: 19  SENTIASYR---RDLMKFVAYFCDKHL--DRLEDITETYITSYVLDMEKNGMSMATVSRN 73

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           ++ IKSF  +L + +I  +    N++  K    +P  L     ++ V+ +L   +++T  
Sbjct: 74  IASIKSFYAFLLRERIVDDDPAENIKPPKIVKKVPEILT----ISEVNKLLSQPTNKTPK 129

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
            + R+ A+L LLY  G+R++E ++L   ++      +     GD++R VP+    ++A+ 
Sbjct: 130 -EIRDKAMLELLYATGIRVTELVTLKLTDVNMKLGFIECHD-GDRVRTVPVAEVAQRALS 187

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
            Y      D++      LF   +G P++   F + I+      G+    T H +RHSFA+
Sbjct: 188 RYITEVRDDMSGGSDY-LFFNCKGAPMSRQGFWKIIKYYAAKAGIDKDITPHMIRHSFAS 246

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIY-TNVNSKNGGDWMMEIYDQTHP 319
           H+L+NG D++S+Q +LGH  ++TTQIY TN  SK     + E Y + +P
Sbjct: 247 HMLNNGADIKSVQEMLGHVDIATTQIYLTNKQSK-----LKEEYAKAYP 290


>gi|89054975|ref|YP_510426.1| phage integrase [Jannaschia sp. CCS1]
 gi|88864524|gb|ABD55401.1| phage integrase [Jannaschia sp. CCS1]
          Length = 304

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 134/266 (50%), Gaps = 20/266 (7%)

Query: 49  FLAFYTEEKITIQTIRQ------LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102
            LA+  + K  + ++R+           + A+I+    Q +   +  R LS +K   ++ 
Sbjct: 29  LLAYGRDLKDAMMSVRKSGGFAGADRAALEAYIAGLEAQGLAAATRARRLSSLKQLYRFA 88

Query: 103 KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
            +     ++  L +    ++  LP  L+ ++   L++    +  ++   +  RN  ++ +
Sbjct: 89  HEEGWREDNPTLQITGPARTRKLPGTLSLEEVDALLEASATYGRNDADRL--RNHCLMQI 146

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           LY  GLR++E +SL    +  D + L + GKG K R+VPL P  R A+  + D     L+
Sbjct: 147 LYATGLRVTELVSLPITALRGDPNMLLVLGKGGKERMVPLSPPARTAMAAWLD----HLD 202

Query: 223 LNIQLP--LF----RGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLS 275
              + P  LF     G  G  L    F   I++L    G+ P   T HTLRH+FATHLL 
Sbjct: 203 ATQEEPRSLFAFPSHGKSGH-LTRVRFFTLIKELSASAGIDPARVTPHTLRHAFATHLLQ 261

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNV 301
           NG DLR+IQ++LGH  ++TT+IYT++
Sbjct: 262 NGADLRAIQTLLGHADIATTEIYTHI 287


>gi|304389555|ref|ZP_07371517.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|315656798|ref|ZP_07909685.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|304327108|gb|EFL94344.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|315492753|gb|EFU82357.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 318

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 156/328 (47%), Gaps = 23/328 (7%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL---AFYTEEK 57
           M     P+ +  ELL   Q +L  L +ERG S  T+ +Y  D R+++ FL      + ++
Sbjct: 1   MGSRPAPDFMCPELLNP-QPYLDYLAVERGASPHTVAAYTRDLRRYITFLIANGVNSLDE 59

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           +T+  +   +      F        +   S +R ++ ++S+ +Y  +  +   +    + 
Sbjct: 60  VTLPVLESFARALEAGFGDY---AAVAPSSARRVIASVRSWHRYAYETGVVRANPTKGIA 116

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             K    LP  L  ++  TL++      S        R+ A+L  LY  G RISEA++L 
Sbjct: 117 PAKVGAHLPTVLTVEEVQTLLEA----ASAPGDDNALRDRALLEFLYATGARISEAVNLA 172

Query: 178 PQNI-MDDQSTL-RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFR 231
             +I +D++  L R+ GKG K R+  +L  + K  LE Y L      L      Q  +F 
Sbjct: 173 VDDINLDEEIPLVRLFGKGRKERLS-MLGHLAKDALEAY-LVRVRPRLAEKGRSQGRVFL 230

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
              G+PL+       I+   +   + +    HTLRH FATHLL  G D+R++Q +LGH  
Sbjct: 231 NTLGRPLSRQSAWAIIQAAAQRAQITVPVGPHTLRHCFATHLLQGGADVRAVQELLGHAS 290

Query: 292 LSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           ++TTQIYT V++    D + E+Y   HP
Sbjct: 291 VTTTQIYTKVSN----DMLREVYASAHP 314


>gi|206561110|ref|YP_002231875.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia
           J2315]
 gi|198037152|emb|CAR53073.1| putative integrase/recombinase [Burkholderia cenocepacia J2315]
          Length = 316

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 147/323 (45%), Gaps = 22/323 (6%)

Query: 2   EGNNLPEIVSFELLKERQN---WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI 58
           E ++     S  LL  R +   +   L +E GL++ TL +Y  D   F  +LA       
Sbjct: 9   EADDDAVAASPALLASRASIDVFCDALWLEHGLARNTLDAYRRDLVLFSQWLA-----AT 63

Query: 59  TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
               +       +  +I+ R   K    S  R LS  + +  +  +    +    L + +
Sbjct: 64  HAAPLDGADEAMVTGYIAARSDGKA--TSSNRRLSVFRRYYGWAVREHRASADPTLRITS 121

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            K++   P  L+E Q   L+    + T      +  R+  +L L+Y  GLR+SE ++L  
Sbjct: 122 AKQAARFPSTLSEAQVEALLGAPDIGTP-----LGLRDRTMLELMYASGLRVSELVTLKT 176

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGK 236
             +  ++  +R+ GKG K R+VP    V    +E Y  D  P  L       LF   RG 
Sbjct: 177 VEVGLNEGVVRVMGKGSKERLVPF-GEVAHGWIERYLRDARPALLGARAADALFVTARGD 235

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            +    F   I++  +   +    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQ
Sbjct: 236 GMTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQ 295

Query: 297 IYTNVNSKNGGDWMMEIYDQTHP 319
           IYT+V  +     +  ++ Q HP
Sbjct: 296 IYTHVARER----LKTLHAQHHP 314


>gi|260575109|ref|ZP_05843110.1| integrase family protein [Rhodobacter sp. SW2]
 gi|259022731|gb|EEW26026.1| integrase family protein [Rhodobacter sp. SW2]
          Length = 313

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 121/250 (48%), Gaps = 24/250 (9%)

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           S   + A++     Q +   +  R LS I+   ++  +     ++  L ++   ++  LP
Sbjct: 52  SRATVEAYLVFCGAQGLAAATRARRLSSIRQLYRFAVEEGWRADNPALRLKGPAQAQHLP 111

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L+  +   L+          T    ARN+A+L LLY  G+R+SE + L    +  D  
Sbjct: 112 QVLSLAEVERLLQAA--RDKGRTGAEQARNAALLELLYATGMRVSELVGLPVAAVRGDPR 169

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP--------- 237
            + ++GKG K R+VPL P  R A+ ++  L   D    + +       GKP         
Sbjct: 170 MILVRGKGGKERMVPLSPPARAALADW--LAQRDTAEAVAVKA-----GKPASKHLFPNR 222

Query: 238 -----LNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
                L   VF   I+ +    G+ P   T HTLRH+FATHLL+ G DLR IQ++LGH  
Sbjct: 223 SAAGHLGREVFYALIKDIAVRAGVDPSKVTPHTLRHAFATHLLAGGADLRVIQTLLGHAD 282

Query: 292 LSTTQIYTNV 301
           ++TT+IYT+V
Sbjct: 283 IATTEIYTHV 292


>gi|167561800|ref|ZP_02354716.1| site-specific tyrosine recombinase XerD [Burkholderia oklahomensis
           EO147]
          Length = 325

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 132/277 (47%), Gaps = 15/277 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +E GLS+ TL +Y  D + F  +LA    E +       L+      +I+ R   K    
Sbjct: 46  LEHGLSRNTLDAYRRDLQLFAQWLAAQHAENVDHANEAMLT-----GYIAARSDGKA--T 98

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R LS  + +  +  +         L + + K++   P  L+E Q   L+    + T 
Sbjct: 99  SSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTP 158

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                +  R+  +L L+Y  GLR+SE +++    +  ++  +R+ GKG K R+VP    V
Sbjct: 159 -----LGLRDRTMLELMYASGLRVSELVTVKSVEVGLNEGVVRVTGKGSKERLVPF-GEV 212

Query: 207 RKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
               +E Y  D  P  L       LF   RG  +    F   I++  +   +    + HT
Sbjct: 213 AHGWIERYLRDGRPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHT 272

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 273 LRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 309


>gi|325125940|gb|ADY85270.1| Tyrosine recombinase xerC [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 295

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 141/286 (49%), Gaps = 12/286 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L+ ER  S  T+ +Y+ D    L     + +E        Q+S  ++  ++   
Sbjct: 5   EQFLSYLKNERSYSPKTVLAYQKD----LAATKKFWQENGGFPGWDQISRRDLEIYLLAT 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             QK+   +L R LS +KSF ++L +R +      + ++  +    LP    + +   ++
Sbjct: 61  -GQKLASSTLSRKLSSLKSFYRFLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQVI 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            ++     ++ K +  RN AI+ L Y  G+R+SE   L  + +  +   + + GKG+K R
Sbjct: 120 RSL-----NDGKPLTVRNRAIVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDR 174

Query: 199 IVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            V      +K + EY       L  N      +F    G+P++     + ++Q+ +  GL
Sbjct: 175 YVFFDQESKKYLEEYLQAARPSLLKNEPDTGAVFLNKLGRPISSRGIAKAVQQIFQKAGL 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                 H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V+
Sbjct: 235 TAGAHPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVS 280


>gi|107023497|ref|YP_621824.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia
           AU 1054]
 gi|116690579|ref|YP_836202.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia
           HI2424]
 gi|170733919|ref|YP_001765866.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia
           MC0-3]
 gi|105893686|gb|ABF76851.1| Tyrosine recombinase XerD [Burkholderia cenocepacia AU 1054]
 gi|116648668|gb|ABK09309.1| tyrosine recombinase XerD [Burkholderia cenocepacia HI2424]
 gi|169817161|gb|ACA91744.1| tyrosine recombinase XerD [Burkholderia cenocepacia MC0-3]
          Length = 318

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 138/297 (46%), Gaps = 19/297 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E GL++ TL +Y  D   F  +LA   +  +            +  +I+ R   K  
Sbjct: 37  LWLEHGLARNTLDAYRRDLALFSQWLAATHDAPLD-----SADEAMVTGYIAARSDGKA- 90

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R LS  + +  +  +    +    L + + K+    P  L+E Q   L+    + 
Sbjct: 91  -TSSNRRLSVFRRYYGWAVREHRASADPTLRITSAKQGARFPSTLSEAQVEALLGAPDIG 149

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           T      +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+VP   
Sbjct: 150 TP-----LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPF-G 203

Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            V    +E Y  D  P  L       LF   RG  +    F   I++  +   +    + 
Sbjct: 204 EVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSP 263

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++ Q HP
Sbjct: 264 HTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LRTLHAQHHP 316


>gi|15835241|ref|NP_297000.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum Nigg]
 gi|270285413|ref|ZP_06194807.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum Nigg]
 gi|270289427|ref|ZP_06195729.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum Weiss]
 gi|301336810|ref|ZP_07225012.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum
           MopnTet14]
 gi|34223083|sp|Q9PK47|XERC_CHLMU RecName: Full=Tyrosine recombinase xerC
 gi|8163270|gb|AAF73578.1| integrase/recombinase, phage integrase family [Chlamydia muridarum
           Nigg]
          Length = 315

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/249 (33%), Positives = 119/249 (47%), Gaps = 9/249 (3%)

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           IR ++ ++       R+++R LS IKSF K+  K +   E+    +R  +    LP  L 
Sbjct: 71  IRLYLLEQIQTTHSKRTVRRRLSAIKSFAKFCVKNQWIPENPAEMIRGPRLPKELPSPLT 130

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            +Q L L+    L      K    R+  +L L Y  GLRISE  +L   +I    + LRI
Sbjct: 131 YEQVLALMSAPDL-----DKVTGFRDRCLLELFYSSGLRISEITALNRSDIDFQSNLLRI 185

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG K RIVP+     + +  Y D              F    GK L+     R  +Q 
Sbjct: 186 CGKGKKERIVPMTKVAVQWLQAYLDHPDRAAVEQDHQACFLNRFGKRLSTRSIDRKFQQY 245

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               GL  + T HT+RH+ ATH L  G DL++IQ +LGH  L TT IYT+V+ K      
Sbjct: 246 LLKTGLSGTITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMK----LK 301

Query: 311 MEIYDQTHP 319
            +I+D+ HP
Sbjct: 302 KQIHDEAHP 310


>gi|295696106|ref|YP_003589344.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295411708|gb|ADG06200.1| integrase family protein [Bacillus tusciae DSM 2912]
          Length = 304

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 149/305 (48%), Gaps = 31/305 (10%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           LE ER LS  T+++Y  D  Q L ++     +   I     L+   IR F+++   + + 
Sbjct: 19  LESERRLSPRTVRAYMGDVGQLLEWM-----QDQGIGGWDLLTPVRIRDFLAELWDRGLS 73

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            RS+ R LS  ++  ++  +     ES +  +   K+   +P  ++ ++   L+ +   +
Sbjct: 74  RRSVARMLSAYRTLYRFFLREDEVRESPLEPVATPKQEKRIPNFMDLEEVFHLLASPDPN 133

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLL 203
           T+     +  R+ A+L  LY  G+R+ EA++L   ++ M  +  L I GKG K R V   
Sbjct: 134 TA-----LGQRDRALLEWLYATGVRVGEAVALRVGDVDMAGRRAL-IHGKGGKERYVLFG 187

Query: 204 PSVRKAILEYYDL--------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYL 254
            S  +A+  Y ++        CP   +     P+F   RG  L+    +R + R + R  
Sbjct: 188 RSAARALTRYLEVGWPALAGACPGPGD-----PVFLNYRGGALSDRSVRRIVDRHMARVA 242

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G     + H LRH+FATHLL  G DLR++Q +LGH  L +TQIYT+   +     ++++Y
Sbjct: 243 GYH-KISPHVLRHTFATHLLDAGADLRAVQELLGHASLRSTQIYTHTTRER----LLQVY 297

Query: 315 DQTHP 319
              HP
Sbjct: 298 LHAHP 302


>gi|261823389|ref|YP_003261495.1| site-specific tyrosine recombinase XerC [Pectobacterium wasabiae
           WPP163]
 gi|261607402|gb|ACX89888.1| tyrosine recombinase XerC [Pectobacterium wasabiae WPP163]
          Length = 311

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 148/299 (49%), Gaps = 19/299 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L+ ER LS LTL SY   +RQ    +   +   +     R+L  + +R+ +S+ +  
Sbjct: 24  LRYLKAERQLSPLTLTSY---SRQLSAVITILSAAGVV--DWRKLDASGVRSVVSRSKRD 78

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +   SL   LS ++SFL ++  R + T +    +   +    LP+ ++  +      N 
Sbjct: 79  GLHSASLALRLSALRSFLDWMVSRGVLTANPAKGVSTPRAGRPLPKNMDVDEM-----NR 133

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           LL    +   +  R+  +L ++YG GLR++E + +  Q+I      + + GKG K R +P
Sbjct: 134 LLEIDLDDP-LAVRDRTMLEVMYGAGLRLAELVGMDYQHIDLASGEVWVVGKGSKERKLP 192

Query: 202 LLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +  +    +  +  L   F    N    +F   +G+ ++    Q+   +     G+    
Sbjct: 193 IGKTAVTWLERWLALRELFGPQDNA---VFISNQGRRISMRNVQKRFAEWGVKQGVNSHV 249

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
             H LRHSFATH+L + GDLR++Q +LGH  L+TTQIYT+++ ++    +  +YD  HP
Sbjct: 250 HPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----LASVYDAAHP 304


>gi|229491429|ref|ZP_04385253.1| site-specific tyrosine recombinase XerC [Rhodococcus erythropolis
           SK121]
 gi|229321714|gb|EEN87511.1| site-specific tyrosine recombinase XerC [Rhodococcus erythropolis
           SK121]
          Length = 308

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 149/319 (46%), Gaps = 18/319 (5%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           + LP  +S  L      + ++L + RG S+ T+++Y  D R  L   +  +E       +
Sbjct: 3   DALPASLSVHL----DAYAEHLRLSRGRSEHTIRAYVGDARALLTHFSAGSENA----DL 54

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
            +L  + +R++++ +        ++ R  S  + F  +L +    +      +       
Sbjct: 55  DRLDLSVMRSWLAAQNAVGTARTTVARRASSARGFTAWLAQTGRISVDPGTRLAAPPARR 114

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           +LP  L + QAL  +D      + + + +  R+  I+ LLY  G+R+ E   L  +++  
Sbjct: 115 TLPTVLRQSQALDAMDAAE-SGAQQQEPLALRDRLIVELLYSTGIRVGELCGLDVESVDA 173

Query: 184 DQSTLRIQGKGDKIRIVPL-LP--SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           D+  LR+ GKG+K R VP  LP  S     LE+    P   +      L  G+RG  L+ 
Sbjct: 174 DRRLLRVLGKGNKERSVPYGLPAESALNGWLEHGR--PALCSDRSGRALLLGVRGGRLDQ 231

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              +  + +    +        H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+
Sbjct: 232 RQARSVVHETMAAIPGAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHASLATTQLYTH 291

Query: 301 VNSKNGGDWMMEIYDQTHP 319
           V+ +     +  ++DQ HP
Sbjct: 292 VSVER----LRSVHDQAHP 306


>gi|217967906|ref|YP_002353412.1| integrase family protein [Dictyoglomus turgidum DSM 6724]
 gi|217337005|gb|ACK42798.1| integrase family protein [Dictyoglomus turgidum DSM 6724]
          Length = 300

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 154/320 (48%), Gaps = 23/320 (7%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++ +L +E +N++  L  ER  S  TL+SY    R  L F  +  E+ +     R     
Sbjct: 1   MNLDLKREIENYINYLRFERNYSPNTLRSY---LRDLLDFYKYCKEKDLDFTNKRN---- 53

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            IR++I     +   + +  R +  ++SF +YL   +   E   + +   K    LP+ L
Sbjct: 54  -IRSYIQFIAQKGYKNSTFVRKVISLRSFFEYLLTFEKIKEDLTVFIPTPKIEKKLPQFL 112

Query: 130 NEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           +       +D V  LL++      I  R+ AI+  LY  G+R+SE + +  ++I  +   
Sbjct: 113 S-------IDEVRKLLNSPSLDNLIGIRDRAIIETLYATGIRVSELVGINEEDINWNYGE 165

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           +R+ GK  K R+V +     K +  Y D     L    +   F   +G  ++    +  I
Sbjct: 166 IRVFGKRAKERVVIVGEETLKILQLYKDYVRPKLLKKPEKAFFLNAKGGRISDRGVRMII 225

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++  +     +S   HTLRH+FATHLL  G DLR +Q +LGH R+STTQIYT++ +    
Sbjct: 226 KKYTKEFNKKIS--PHTLRHTFATHLLEGGADLRYVQELLGHVRISTTQIYTHLTT---- 279

Query: 308 DWMMEIYDQTHPSITQKDKK 327
           D +   Y  +HP   +K+++
Sbjct: 280 DQIRRTYTVSHPRAIKKERE 299


>gi|317476381|ref|ZP_07935630.1| tyrosine recombinase XerC [Bacteroides eggerthii 1_2_48FAA]
 gi|316907407|gb|EFV29112.1| tyrosine recombinase XerC [Bacteroides eggerthii 1_2_48FAA]
          Length = 294

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 150/306 (49%), Gaps = 23/306 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L  L  ER  SK T++ Y+ D    ++ L  + EE +   T   +    IR +I+  
Sbjct: 5   DSFLDYLLYERNYSKGTVRYYQAD----ILELQKFGEELLGDLTPSDVDAGLIREWITSL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     ++ R LS ++S+ KYL ++ +     +  +   KK   LP  L E     L+
Sbjct: 61  MDRGCAPNTVNRKLSSVRSYYKYLLRKGMVAADPLQKITGPKKKKPLPVFLREGDVNRLL 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D+V      E      R+  I+ + Y  G+R+SE + L  ++I    S +++ GK +K R
Sbjct: 121 DDVDFGEGFEG----CRDRLIIEMFYVTGMRLSELIGLDDKDIDFSASLIKVTGKRNKQR 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-----FRGIRGKPLNPGVFQRYIRQLRRY 253
           ++P    +R ++ EY ++       N  LP+     F    G+ LN  +    +++    
Sbjct: 177 LLPFDEELRCSMQEYVNV------RNQALPVRSDAFFIRKTGERLNRSIVAYIVKRNLSK 230

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +      + H LRH+FAT +L+NG DL SI+ +LGH  L+TT++YT+   +     + ++
Sbjct: 231 VVTVKKRSPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEE----LKKV 286

Query: 314 YDQTHP 319
           Y+Q HP
Sbjct: 287 YNQAHP 292


>gi|146337735|ref|YP_001202783.1| site-specific tyrosine recombinase [Bradyrhizobium sp. ORS278]
 gi|146190541|emb|CAL74543.1| site-specific tyrosine recombinase [Bradyrhizobium sp. ORS278]
          Length = 308

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 150/310 (48%), Gaps = 52/310 (16%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK------ITIQTIRQ-LSYTEIRA 73
           +L  +  E+G  + TL +Y  D    LI L+ +   K         Q +R  L+  ++R 
Sbjct: 4   FLDMMAAEQGAGQNTLDAYRRD----LIDLSEFLTRKGNGFAAADTQALRDYLANLDLRG 59

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F S          S+ R LS ++   ++L   +I ++     +   K+  +LP+ L+   
Sbjct: 60  FKSS---------SVARRLSAMRHLFRFLLSERIRSDDPAAILSGPKRGRALPKVLS--- 107

Query: 134 ALTLVDNVLLHTSHETKWIDA---------RNSAILYLLYGCGLRISEALSLTPQNIMDD 184
            +  VD +L      ++  DA         R   +L +LY  GLR+SE ++L      +D
Sbjct: 108 -IGDVDRMLTKAKELSEVADASLSQRLRALRLYCLLEVLYATGLRVSELVALPRTAARND 166

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGV 242
              + ++GKG+K R+VPL  + R+A+ +Y  +      L+ Q P  +     GK L P  
Sbjct: 167 ARMIVVRGKGNKERLVPLNQASRQAMADYLAM------LDRQKPHAKASATFGKWLFPSF 220

Query: 243 ----------FQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
                     F R +++L    GLP    + H LRH+FA+HLL NG DLR +Q++LGH  
Sbjct: 221 GESGHLTRQHFARDLKELAAASGLPARLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTD 280

Query: 292 LSTTQIYTNV 301
           +STTQIYT+V
Sbjct: 281 ISTTQIYTHV 290


>gi|77359067|ref|YP_338642.1| site-specific recombinase [Pseudoalteromonas haloplanktis TAC125]
 gi|76873978|emb|CAI85199.1| site-specific recombinase [Pseudoalteromonas haloplanktis TAC125]
          Length = 315

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 155/306 (50%), Gaps = 35/306 (11%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L+ ER  S  T+  Y        ++ +   ++  ++Q         IR +    R++++ 
Sbjct: 27  LKFERQYSAHTVNQYVSQLGFAALYFSKLCDDWFSVQG------EHIRRYSMALRSKQLS 80

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNEKQALTLVDN 140
            R++   LS I+S  K+LK + I  +++  N    ++  K +  LP+ L+  Q   L++ 
Sbjct: 81  GRTISLKLSCIRSLYKFLKAKNIAKQAHYHNPAVGIKGPKFAKPLPKNLDVDQMARLLEI 140

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                  + + +  R+ A++ L+Y  GLRISE +    Q+I      + ++GKG+K R++
Sbjct: 141 P------DDEPLAIRDKAMMELMYSSGLRISELVGANLQDISAANGEILVRGKGNKERLI 194

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL------ 254
           P+      A+ ++  + P   N + ++ +F   +   ++       +RQ+R  +      
Sbjct: 195 PVGSKALNALKKWLIIRPQFANPD-EVAVFLSSKKNRIS-------VRQVRLRMQEWGIK 246

Query: 255 -GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+      H LRHSFA+H+L + GDLR++Q +LGH  LS TQ+YT+++ ++    + ++
Sbjct: 247 QGISSQVHPHKLRHSFASHILESSGDLRAVQELLGHSSLSATQVYTHLDFQH----LAKV 302

Query: 314 YDQTHP 319
           YD THP
Sbjct: 303 YDNTHP 308


>gi|242279423|ref|YP_002991552.1| tyrosine recombinase XerD [Desulfovibrio salexigens DSM 2638]
 gi|242122317|gb|ACS80013.1| tyrosine recombinase XerD [Desulfovibrio salexigens DSM 2638]
          Length = 304

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 145/299 (48%), Gaps = 16/299 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L IERGLS+ +L  Y  D   F  FL    E++     I   +   +  +++  R+
Sbjct: 18  YLEYLLIERGLSENSLSGYLSDLESFQSFL----EDRSA--KIEDATSQTLLLYLTYLRS 71

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   SL R LS ++ F  +   R    E     + N K    +P  L+ ++       
Sbjct: 72  KALKSTSLARHLSSLRGFFAFCTSRGFIKEDPATLLENPKLPRKIPEFLSPEEI-----G 126

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +L     T+ +  R+  +L LLY  G+R+SE ++L  ++       L I GKG K R+V
Sbjct: 127 RMLALPKLTEKLGFRDRTMLELLYAAGMRVSELINLNIEDFDPQTGVLIIFGKGSKERLV 186

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+    +  + +Y        N  ++  +F    GK L      + I++     G+  S 
Sbjct: 187 PIHYVAQNFLNQYIKDWRPAFNPKVK-NIFLNRSGKGLTRQGVWKLIKKFALEAGIKRSI 245

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           + HT RHSFATHLL  G DLR++Q +LGH  ++ T+IYT++ +      +++++ + HP
Sbjct: 246 SPHTFRHSFATHLLDGGADLRTVQLLLGHSDINATEIYTHIQAGR----LVQLHKRFHP 300


>gi|325925497|ref|ZP_08186888.1| tyrosine recombinase XerD subunit [Xanthomonas perforans 91-118]
 gi|325544089|gb|EGD15481.1| tyrosine recombinase XerD subunit [Xanthomonas perforans 91-118]
          Length = 323

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 150/309 (48%), Gaps = 23/309 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L     E+G+++ TL+SY  D    L  LA + +       +  +    +  ++  R
Sbjct: 28  ERFLDRFWAEQGVARQTLESYRRD----LEGLARWRDGAHG--GLLGIDRAALFDYLRWR 81

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  RS  R LS +++F     +  + ++     +   +   SLP+AL E Q    +
Sbjct: 82  TQANYSPRSTARLLSTLRAFYGLCLRDGVRSDDPTTLIDPPQLPRSLPKALTESQ----I 137

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           + +L     +T     R+ A+L L+Y  GLR+SE ++L    +   Q  LR+ GKG K R
Sbjct: 138 EALLAAPDVDTP-AGLRDRAMLELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDR 196

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNI-------QLPLFRGIRGKPLNPGVFQRYIRQLR 251
           +VPL    +  +  Y       L  N        Q+PLF     +PL+   F   +++  
Sbjct: 197 LVPLGEESQHWLERYLREARPLLAANTPVAAVDGQVPLFIDAARQPLSRQQFWALVKRYA 256

Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              G+ P + + H LRHSFATHLL++G DLR++Q +LGH  LSTTQIYT V  ++    +
Sbjct: 257 AVAGIDPDTVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQH----L 312

Query: 311 MEIYDQTHP 319
            +++   HP
Sbjct: 313 QKLHASHHP 321


>gi|333029648|ref|ZP_08457709.1| Tyrosine recombinase xerC [Bacteroides coprosuis DSM 18011]
 gi|332740245|gb|EGJ70727.1| Tyrosine recombinase xerC [Bacteroides coprosuis DSM 18011]
          Length = 309

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 147/302 (48%), Gaps = 19/302 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  L  ER  S  T+++Y  D  QF   + F +EE     ++++L+   +R+++     
Sbjct: 22  FIDYLNYERNYSSKTVKAYRNDIEQFFQDMCFNSEE----CSLKELNVYNVRSWMVSLMD 77

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     S+KR LS ++ F +YL K        +  +   K   +LP  +  K     +D 
Sbjct: 78  QGYSTASVKRKLSSLRVFSRYLLKIGEIKSDKLKLVEGPKSGKNLPEFIQAKD----MDK 133

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +L     E  +   R+  ++ + Y  G+R++E + L   ++      +++ GKG+K R++
Sbjct: 134 LLEGEFFEKNFEGFRDKLMIDMFYSTGIRLAELVGLNDSDVDLVSRQIKVLGKGNKERVI 193

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           P   S+  +I EY      + N +I+      F    G  +   +  + ++     +   
Sbjct: 194 PFGSSLADSICEYLK----ERNTSIENRSGAFFIRSNGLRVYRNLVYKSVQSSLSTISTL 249

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           +  + H LRHSFAT++L+NG DL+ I+ ILGH  LS T++YT+   K     + ++Y+Q 
Sbjct: 250 VKCSPHVLRHSFATNMLNNGADLQVIKEILGHTSLSATEVYTHTTFKE----LKKVYNQA 305

Query: 318 HP 319
           HP
Sbjct: 306 HP 307


>gi|169629452|ref|YP_001703101.1| site-specific tyrosine recombinase XerD [Mycobacterium abscessus
           ATCC 19977]
 gi|169241419|emb|CAM62447.1| Tyrosine recombinase XerD [Mycobacterium abscessus]
          Length = 315

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 150/313 (47%), Gaps = 21/313 (6%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E Q++L +L++ERG++  TL SY  D R++   LA   + KI    + ++  T++  F+ 
Sbjct: 11  EIQSYLDHLDVERGVAANTLSSYRRDLRRYQQHLA---DRKI--DRLAEVCETDVSDFVV 65

Query: 77  KRR-------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
             R         ++   S  R+L  ++   ++     +        ++    +  LP++L
Sbjct: 66  TLRRGDPANGVPELSASSAARALIAVRGLHRFAAIEGLAPTDVARAVKPPTPNRRLPKSL 125

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
             +Q   L++      S     +D RN A+L LLY  G RISEA+ L   ++     ++ 
Sbjct: 126 TVEQVEALLNAAGGGGSDGP--LDLRNRALLELLYSTGARISEAVGLDVDDVDVQARSVL 183

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LP-LFRGIRGKPLNPGVFQRY 246
           + GKG K R+VP+     +A+  Y      DL    +  +P LF   RG  L+     + 
Sbjct: 184 LWGKGGKQRLVPVGRPAVEALQAYLVRGRPDLARRGRGGVPALFLNSRGGRLSRQSAWQV 243

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +        +  + + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V     
Sbjct: 244 LADAAERAKISAAVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVSA- 302

Query: 307 GDWMMEIYDQTHP 319
              + E++   HP
Sbjct: 303 ---LREVWAGAHP 312


>gi|76579073|gb|ABA48548.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1710b]
          Length = 508

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 134/277 (48%), Gaps = 15/277 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +E GLS+ TL +Y  D + F  +LA        + ++   S   +  +I+ R   K    
Sbjct: 229 LEHGLSRNTLDAYRRDLQLFAQWLAARH-----VASVDHASEPTLTEYIAARSDGKAT-- 281

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R LS  + +  +  +         L + + K++   P  L+E Q   L+    + T 
Sbjct: 282 SSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTP 341

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+VP    V
Sbjct: 342 -----LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPF-GEV 395

Query: 207 RKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
               +E Y  D  P  L       LF   RG  +    F   I++  +   + +  + HT
Sbjct: 396 AHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHT 455

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 456 LRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 492


>gi|241766196|ref|ZP_04764098.1| tyrosine recombinase XerD [Acidovorax delafieldii 2AN]
 gi|241363726|gb|EER59095.1| tyrosine recombinase XerD [Acidovorax delafieldii 2AN]
          Length = 299

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 151/302 (50%), Gaps = 17/302 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            ++  L +E GL++ TL +Y  D    L   A +  ++     +   +   ++A+ ++R 
Sbjct: 11  TFVDALWLEDGLARNTLAAYRRD----LTLYATWLAQQQPALALDSTAEHHLQAYFAERH 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            Q     S  R L+ ++ +  + L++R+I+ +  +  ++  ++   +P+ L++ Q     
Sbjct: 67  AQTRAT-SANRRLTVLRRYFHWALRERRISADPTV-RLQAARQPLRVPKTLSQAQV---- 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL+       +  R+  +L L+Y  GLR++E ++L    +   +  LR+ GKG K R
Sbjct: 121 -EALLNAPDVGSALGLRDRTMLELMYASGLRVTELVTLKTYQLGLAEGVLRVMGKGSKER 179

Query: 199 IVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP     R  I  Y ++     L       LF   RG  +   +F   +++     G+ 
Sbjct: 180 LVPFGEEARNWIERYLHEARGAILGGQQTDDLFVTHRGAGMTRVMFWVIVKKWAAVAGIT 239

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           +  + HTLRH+FATHLL++G DLR +Q +LGH  +STT IYT+V  +     +  ++++ 
Sbjct: 240 VPLSPHTLRHAFATHLLNHGADLRVVQLLLGHVDISTTTIYTHVARER----LKALHERH 295

Query: 318 HP 319
           HP
Sbjct: 296 HP 297


>gi|295133019|ref|YP_003583695.1| tyrosine recombinase XerC [Zunongwangia profunda SM-A87]
 gi|294981034|gb|ADF51499.1| tyrosine recombinase XerC [Zunongwangia profunda SM-A87]
          Length = 297

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 148/300 (49%), Gaps = 22/300 (7%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E+  S  TL++YE D   F  FL      +     ++ + Y +IR +I       + 
Sbjct: 10  LLLEKNYSLHTLKAYEADLLSFHEFLL----AEFECSDLKNVDYAQIRNWIVSLSESGVS 65

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           +RS+ R +S +KS+  +L+K    + S +   R LK +  L    ++ +  T+++++   
Sbjct: 66  NRSINRKISSLKSYYYFLQKVGELSISPLQKHRPLKMAKKLQVPFSKVEVATVINDI--- 122

Query: 145 TSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
              +T   +  R+ AI+ L Y  GLR  E ++L   ++   +  +++ GK +K R +PLL
Sbjct: 123 ---DTDSFEGIRDKAIIELFYSAGLRRIELINLGINDLDLARLNIKVLGKRNKERYLPLL 179

Query: 204 PSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
            SV K I  Y +    + P     +    LF   +G  ++  +  R I      +   + 
Sbjct: 180 KSVAKTIELYIEQRSHIVPDTAKTS---RLFISSKGDKMSESLVYRIINTYFSKVSAKVK 236

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + H LRHSFATHLL+ G +L +++ +LGH  L+ TQIYT+    N    +  I+ + HP
Sbjct: 237 KSPHILRHSFATHLLNEGANLNAVKELLGHSSLAATQIYTH----NSIAELKNIHSKAHP 292


>gi|330993350|ref|ZP_08317285.1| Tyrosine recombinase xerD [Gluconacetobacter sp. SXCC-1]
 gi|329759380|gb|EGG75889.1| Tyrosine recombinase xerD [Gluconacetobacter sp. SXCC-1]
          Length = 307

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 149/314 (47%), Gaps = 40/314 (12%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+    ERG +  TL +Y    R      A      +T +T  +    ++RA+++    
Sbjct: 9   FLEMQAAERGAALNTLAAY---ARDLADMTAVLHAGGVTARTAGE---ADLRAYLAGLAG 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q +  R+  R LS +K +  +L +  +  ++    +   +    LPR L+E +    V+ 
Sbjct: 63  QGLAARTQARRLSCLKQYFLFLAREGMRPDNPAALLEAPRLDTPLPRFLSEGE----VEA 118

Query: 141 VLLHTSHETKWIDARNS------AILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGK 193
           +L   + E     AR        A L +LY  GLRISE L+L P+  +D    +  ++GK
Sbjct: 119 LLAACAPEPDATPARQRRLQVARAALEMLYASGLRISELLAL-PRRALDAAPGMMLVRGK 177

Query: 194 GDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRG--KPLNPGVFQRY 246
           G + R+VP+    R+A     +       PF         LF G RG  +P+    F R 
Sbjct: 178 GGRERMVPMSARAREAARALMEADAARRSPF---------LFPG-RGVARPMTRQGFDRI 227

Query: 247 IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +  +    GL P   + H LRHSFATHLL++G DLR++Q +LGH  ++TTQIYT+V    
Sbjct: 228 LHDVALRAGLDPARLSPHVLRHSFATHLLAHGADLRALQVLLGHADIATTQIYTHVML-- 285

Query: 306 GGDWMMEIYDQTHP 319
             D + E     HP
Sbjct: 286 --DRLREAVADHHP 297


>gi|291527524|emb|CBK93110.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 306

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 153/302 (50%), Gaps = 23/302 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N+L+    ++ L + TL++Y  D RQF         E+ +++ I +++  ++  +I+ R
Sbjct: 9   ENYLEYCRTQKCLDEKTLKAYRIDLRQF--------SEEPSLEKIIEITTNDLEDYIA-R 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRAL---NEKQA 134
             Q+   +++KR ++ IK+F  YL+ +++   +    ++ + ++   LP+ +     ++ 
Sbjct: 60  LHQQYKPKTVKRKIASIKAFFHYLEYKELLAINPFTKIQVHFREPTILPKIIPLHTVEKF 119

Query: 135 LTLV----DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           LT++    DN   +          R++A+  LL+  G+RISE  SL  ++I     ++ I
Sbjct: 120 LTMIYTQRDNAKTNYQRRNAL---RDAAVSELLFATGMRISELCSLKNEDINLHDGSILI 176

Query: 191 QGKGDKIRIVPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
            GKGDK R + +   SV K I EY     F   +      F    GKPL+    +R I +
Sbjct: 177 YGKGDKERRIHIGNDSVSKIIEEYK--AEFQTEIRSCNHFFANQNGKPLSDQAVRRMINK 234

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                 + L  T H  RH+FAT LL    D+R IQ +LGH  ++ T+IYT+V +    D 
Sbjct: 235 YCSLADIDLHITPHMFRHTFATSLLEADVDIRYIQEMLGHSSINVTEIYTHVTTAKQRDI 294

Query: 310 MM 311
           ++
Sbjct: 295 LI 296


>gi|323466640|gb|ADX70327.1| Integrase/recombinase XerC [Lactobacillus helveticus H10]
          Length = 302

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 140/286 (48%), Gaps = 19/286 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++LQN   ER  S+LT+ SY+ D    L+    + +E       + +   +I+ ++    
Sbjct: 13  SYLQN---ERHYSELTISSYQTD----LLEAKKFWQENGGFDGWKNVQERDIQIYLQNLA 65

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRK---ITTESNILNMRNLKKSNSLPRALNEKQALT 136
            +K+   S  R +S + SF ++L +RK   I     I   R  KK   LP      +   
Sbjct: 66  DRKLVRSSQARQMSSLHSFFRFLTRRKFIKIDPTQGITLRRGEKK---LPEFFYGNELKQ 122

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           + D++        K +  RN A+  L Y  G+R+SE  +LT + I  +  T+ + GKG+K
Sbjct: 123 VFDSL-----KGNKPLTMRNLALFELFYATGMRVSEVSNLTLRQIDLNLQTILVHGKGNK 177

Query: 197 IRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R V      +K+++ Y  D  P  L    +  +F    G PL+    +  +++     G
Sbjct: 178 DRYVAFDDHTKKSLVRYLEDARPNLLKDETEQHVFLSNLGNPLSKRGIEYVMQKTFNQAG 237

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +      H LRH+FAT +L+NG DLRS+Q +LGH  LS TQIYT+V
Sbjct: 238 ISGKVHPHELRHTFATAMLNNGADLRSVQELLGHSSLSATQIYTHV 283


>gi|183981830|ref|YP_001850121.1| integrase/recombinase XerC [Mycobacterium marinum M]
 gi|183175156|gb|ACC40266.1| integrase/recombinase XerC [Mycobacterium marinum M]
          Length = 302

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 136/304 (44%), Gaps = 28/304 (9%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L ++ G S  T ++Y  D R  L +LA    +      +R LS   +R++++        
Sbjct: 16  LALQCGRSAHTRRAYLGDLRSLLDYLAGRGAD------LRALSLPVLRSWLATAAGAGAA 69

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +L R  S +K+F  +  +R +        ++  K   +LP  L + QAL  +      
Sbjct: 70  RTTLARRTSAVKAFTAWAVRRGLLATDPAARLQVPKAHRTLPAVLRQDQALAAM-TAAKS 128

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            + +   +  R+  I+ LLY  G+R+SE   L   ++      +R+ GKG+K R  P   
Sbjct: 129 GAQQGDPLALRDRLIVELLYATGIRVSELCGLDIDDVDTGHRLVRVLGKGNKQRTAPFGQ 188

Query: 205 SVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL--------G 255
              +A+  +  D  P          L  G RG+ L+       +RQ R  +        G
Sbjct: 189 PAAEALQAWLADGRPALATAESGPALLLGARGRRLD-------VRQARTVVHQTVAAVDG 241

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            P     H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V        +  ++D
Sbjct: 242 AP-DMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSR----LRAVHD 296

Query: 316 QTHP 319
           Q HP
Sbjct: 297 QAHP 300


>gi|163792809|ref|ZP_02186786.1| integrase/recombinase XerD [alpha proteobacterium BAL199]
 gi|159182514|gb|EDP67023.1| integrase/recombinase XerD [alpha proteobacterium BAL199]
          Length = 314

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 135/286 (47%), Gaps = 14/286 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ +  ERG ++ TL +Y  D     ++L    E   +++T        +RA++S  
Sbjct: 15  ETFLEMMAAERGAARNTLDAYGRDLMHAELWL---NERGGSLETA---DVDGLRAYLSAA 68

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +  R+  R LS  + F ++L       +     +   ++   LP+ L+E     L+
Sbjct: 69  EAGGVMPRTAARRLSAQRQFFRFLYAEGRRADDPTATLDAPRRGRPLPKILSEADVDALL 128

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D        E      R   +L +LY  GLR+SE + L    +  D   L ++GKG K R
Sbjct: 129 DAACDRPGPE----GLRLICLLEVLYATGLRVSELVGLPFAAVARDPHVLIVRGKGGKER 184

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF--RGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL  +   AI  Y  +    L       LF  R  +G  L    F + + +     G+
Sbjct: 185 MVPLTAAAMDAIAAYKAVRGVFLTTKASPHLFPSRSAQGH-LTRRRFGQLLDETAILAGI 243

Query: 257 -PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            P   + H LRH+FATHLL +G DLRS+Q +LGH  +STTQIYT+V
Sbjct: 244 DPAKVSPHVLRHAFATHLLDHGADLRSVQQMLGHADISTTQIYTHV 289


>gi|300780929|ref|ZP_07090783.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030]
 gi|300532636|gb|EFK53697.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030]
          Length = 294

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 133/291 (45%), Gaps = 17/291 (5%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +G S+ T++ Y  D R        + +           +   +R +++    Q +   ++
Sbjct: 19  KGRSEATVKGYRSDLRTLAEVAPTFDD----------FTLIALRGWLADAMRQGLARSTM 68

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R  +  +SF  +  +R          +   + +  LP  +   +A  LV+  +   S  
Sbjct: 69  ARRTAAARSFSTWAYERGYLDSDVAARLVTPQINRHLPDVVTSSRAGELVEAEINPDSDG 128

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
            +   AR+ A+L L+Y  G+R++E   L   ++   Q   R+ GKG+K R+VP       
Sbjct: 129 PEA--ARDRAMLELMYATGMRVAELTGLDVDDVDTKQGLARVTGKGNKQRVVPFGERATA 186

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           AI E+       ++      LF G RG  ++    +R + +  +  G     + H LRHS
Sbjct: 187 AIEEWKTRRTELVSDKSGHALFLGSRGGRIDQRQVRRVVERAAQRTG-DTDLSPHALRHS 245

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            ATH+L  G DLR +Q +LGH  L TTQIYT+V+++     +  +YDQ HP
Sbjct: 246 AATHMLEGGADLRVVQELLGHSSLQTTQIYTHVSAQR----LKNVYDQAHP 292


>gi|183982521|ref|YP_001850812.1| integrase/recombinase, XerD [Mycobacterium marinum M]
 gi|183175847|gb|ACC40957.1| integrase/recombinase, XerD [Mycobacterium marinum M]
          Length = 313

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 143/313 (45%), Gaps = 19/313 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF-ISK 77
           Q +L +L IERG++  TL SY  D R++   L     E   I  + ++   ++  F ++ 
Sbjct: 11  QGYLDHLAIERGVAANTLSSYRRDLRRYSKHL-----EDRGITDLAKVGEDDVSEFLVAL 65

Query: 78  RRTQK------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           RR         +   S  R+L  ++   ++     +        +R       LP++L  
Sbjct: 66  RRGDPESGVLGLSAVSAARALIAVRGLHRFAAAEGLAALDVARAVRPPTPGRRLPKSLTI 125

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            + L L++        +   +  RN A+L LLY  G RISEA+ L   +I     T+ +Q
Sbjct: 126 DEVLALLEGAGGDNPADGP-LTLRNRALLELLYSTGSRISEAVGLDVDDIDTQARTVLLQ 184

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQ 249
           GKG K R+VP+     +A+  Y      +L    +    +F   RG  L+     + ++ 
Sbjct: 185 GKGGKQRLVPVGRPAVQALDAYLVRGRPELARRGRGTPAIFLNARGGRLSRQSAWQVLQD 244

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+    + H LRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V        
Sbjct: 245 AAERAGITSGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHA---- 300

Query: 310 MMEIYDQTHPSIT 322
           + E++   HP  T
Sbjct: 301 LREVWAGAHPRAT 313


>gi|126736338|ref|ZP_01752080.1| tyrosine recombinase XerD [Roseobacter sp. CCS2]
 gi|126714159|gb|EBA11028.1| tyrosine recombinase XerD [Roseobacter sp. CCS2]
          Length = 313

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 121/250 (48%), Gaps = 27/250 (10%)

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           S   + +++     + +   +  R LS IK   ++  +     ++  + ++   +   LP
Sbjct: 55  SRDHVESYLIDCEAEGLAKSTRARRLSAIKQLYRFAFEEGWRDDNPAIQIKGPGREQRLP 114

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L+ ++    VD  LL  +  T     RN+ ++ LLY  G+R++E +SL       D  
Sbjct: 115 KTLSIEE----VDR-LLDAARNTPKEALRNACLMELLYATGMRVTELVSLPVSAARGDPR 169

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            L ++GKGDK R+VPL P  R A+  Y       L    +        GKP +  +F   
Sbjct: 170 MLLVRGKGDKERLVPLSPPARAALATY-------LTARDKAEDAGRKDGKPASKFLFPSR 222

Query: 247 IRQ----LRRYLGL-----------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
            +       R+ GL           P   T HTLRH+FATHLL+ G DLRSIQ++LGH  
Sbjct: 223 GKSGHLTRHRFFGLIKEFAVAGGVSPAKVTPHTLRHAFATHLLAGGADLRSIQTMLGHAD 282

Query: 292 LSTTQIYTNV 301
           ++TT+IYT+V
Sbjct: 283 VATTEIYTHV 292


>gi|296283728|ref|ZP_06861726.1| integrase [Citromicrobium bathyomarinum JL354]
          Length = 304

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 142/309 (45%), Gaps = 30/309 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  L ++RG +  TL +Y  D    +  +     E  T   + +L            
Sbjct: 7   EDFLAALAVDRGAAANTLAAYRRDLEGAVGIVGPL--EDATRTDLARLGAA--------- 55

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +   ++ R  S ++ F  +L+   + +++    + +  K  SLP+ L+  Q    V
Sbjct: 56  -WADLAPATVARKASALRQFFGFLEDEGLRSDNPSAALPSPTKRRSLPKILDHAQ----V 110

Query: 139 DNVLLHTSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           + +      E +  D    R  A++ LLYG GLR SE ++L    +  D   L I GKG 
Sbjct: 111 EALFAQAEREAEEGDPAALRLLAMIELLYGSGLRASELVTLPLSAVPRDAPFLTITGKGG 170

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R+VPL    R  +  +  + P         P     RGK L      + ++ L    G
Sbjct: 171 KERLVPLGTRARAVLSRWLAVRPEGS------PWLFPSRGKHLTRIRLYQLLKALAERSG 224

Query: 256 L-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           + P   + H LRH+FATHLL  G DLR++Q++LGH  ++TTQIYT+V S      ++ + 
Sbjct: 225 IDPAKISPHVLRHAFATHLLEGGADLRALQTLLGHADIATTQIYTHVESAR----LVALV 280

Query: 315 DQTHPSITQ 323
           ++ HP   Q
Sbjct: 281 NERHPLADQ 289


>gi|260101613|ref|ZP_05751850.1| integrase/recombinase XerC [Lactobacillus helveticus DSM 20075]
 gi|260084576|gb|EEW68696.1| integrase/recombinase XerC [Lactobacillus helveticus DSM 20075]
          Length = 302

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 140/286 (48%), Gaps = 19/286 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++LQN   ER  S+LT+ SY+ D    L+    + +E       + +   +I+ ++    
Sbjct: 13  SYLQN---ERHYSELTISSYQTD----LLEAKKFWQENGGFDGWKNVQERDIQIYLQNLA 65

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRK---ITTESNILNMRNLKKSNSLPRALNEKQALT 136
            +K+   S  R +S + SF ++L +RK   I     I   R  KK   LP      +   
Sbjct: 66  DRKLVRSSQARQMSSLHSFFRFLTRRKFIKIDPTQGITLRRGEKK---LPEFFFGNELKQ 122

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           + D++        K +  RN A+  L Y  G+R+SE  +LT + I  +  T+ + GKG+K
Sbjct: 123 VFDSL-----KGNKPLTMRNLALFELFYATGMRVSEVSNLTLRQIDLNLQTILVHGKGNK 177

Query: 197 IRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R V      +K+++ Y  D  P  L    +  +F    G PL+    +  +++     G
Sbjct: 178 DRYVAFDDHTKKSLVRYLEDARPNLLKDETEQHVFLSNLGNPLSKRGIEYVMQKTFNQAG 237

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +      H LRH+FAT +L+NG DLRS+Q +LGH  LS TQIYT+V
Sbjct: 238 ISGKVHPHELRHTFATAMLNNGADLRSVQELLGHSSLSATQIYTHV 283


>gi|269302896|gb|ACZ32996.1| putative tyrosine recombinase XerC [Chlamydophila pneumoniae
           LPCoLN]
          Length = 312

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 145/313 (46%), Gaps = 22/313 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLA------------FYTEE-KITIQTIRQL 66
           ++L  L++ +  S  TL++Y  D     IFL               TE+ K++       
Sbjct: 7   SFLDYLKMVKSASPHTLRNYCLDLNGLKIFLEERGNLAPSSPLQLATEKRKVSELPFSLF 66

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           +   +R +I+K        R++KR LS IKSF  Y   +KI  E+    +   +    LP
Sbjct: 67  TKEHVRMYIAKLIENGKAKRTIKRCLSSIKSFAHYCVVQKILLENPAETIHGPRLPKELP 126

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             +   Q       VL+ T   +K+   R+  ++ L Y  GLRISE +++  Q+      
Sbjct: 127 SPMTYAQV-----EVLMATPDISKYHGLRDRCLMELFYSSGLRISEIVAVNKQDFDLSTH 181

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            +RI+GKG K RI+P+  +  + I  Y +             +F    G+ ++     R 
Sbjct: 182 LIRIRGKGKKERIIPVTSNAIQWIQTYLNHPDRKRLEKDPQAIFLNRFGRRISTRSIDRS 241

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
            ++  R  GL    T HT+RH+ ATH L +G DL++IQ++LGH  L TT +YT V+ K  
Sbjct: 242 FQEYLRRSGLSGHITPHTIRHTIATHWLESGMDLKTIQALLGHSSLETTTVYTQVSVK-- 299

Query: 307 GDWMMEIYDQTHP 319
                + + + HP
Sbjct: 300 --LKKQTHQEAHP 310


>gi|118617636|ref|YP_905968.1| site-specific tyrosine recombinase XerC [Mycobacterium ulcerans
           Agy99]
 gi|118569746|gb|ABL04497.1| integrase/recombinase XerC [Mycobacterium ulcerans Agy99]
          Length = 302

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 137/304 (45%), Gaps = 28/304 (9%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L ++ G S  T ++Y  D R  L +LA    +      +R LS   +R++++        
Sbjct: 16  LALQCGRSAHTRRAYLGDLRSLLDYLAGRGAD------LRALSLPVLRSWLATAAGAGAA 69

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +L R  S +K+F  +  +R +        ++  K   +LP  L + QAL  +      
Sbjct: 70  RTTLARRTSAVKAFTAWAVRRGLLATDPAARLQVPKAHRTLPAVLRQDQALAAM-TAAKS 128

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           ++ +   +  R+  I+ LLY  G+R+SE   L   ++      +R+ GKG+K R  P   
Sbjct: 129 SAQQGDPLALRDRLIVELLYATGIRVSELRGLDIDDVDTGHRLVRVLGKGNKQRTAPFGQ 188

Query: 205 SVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL--------G 255
              +A+  +  D  P          L  G RG+ L+       +RQ R  +        G
Sbjct: 189 PAAEALQAWLADGRPALATAESGPALLLGARGRRLD-------VRQARTVVHQTIAAVDG 241

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            P     H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V        +  ++D
Sbjct: 242 AP-DMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSR----LRAVHD 296

Query: 316 QTHP 319
           Q HP
Sbjct: 297 QAHP 300


>gi|323495291|ref|ZP_08100372.1| site-specific tyrosine recombinase XerC [Vibrio brasiliensis LMG
           20546]
 gi|323310468|gb|EGA63651.1| site-specific tyrosine recombinase XerC [Vibrio brasiliensis LMG
           20546]
          Length = 308

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 157/313 (50%), Gaps = 16/313 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L K  + + + L  E+GLS  T ++Y    +Q L  +A +    + ++  +Q+    +R 
Sbjct: 12  LQKPLERFYEYLRSEKGLSLHTQRNY----KQQLETMAHHLVH-LGLKEWQQVDAGWVRQ 66

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             SK     +   S+   LS ++SF  +L  R     +    +   +K   LP+ L+  +
Sbjct: 67  IASKGMRDGMKASSIATRLSSLRSFFDFLILRGEMAANPAKGVSAPRKKRPLPKNLDVDE 126

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++       +E   +  R+ A++ L+YG GLR++E +S+  +++      LR+ GK
Sbjct: 127 VGQLLE------VNEDDPLAVRDRAMMELMYGAGLRLAELVSVNVKDVSLSSGELRVIGK 180

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GDK R VP      + + ++  +    L  + +  LF    G  ++    Q+ + +  + 
Sbjct: 181 GDKERKVPFAGMATEWVTKWLKVRS-SLAKSDETALFVSKLGVRISHRNVQKRMAEWGQK 239

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ ++    + ++
Sbjct: 240 QSVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQH----LADV 295

Query: 314 YDQTHPSITQKDK 326
           YDQ HP   +K K
Sbjct: 296 YDQAHPRAKKKGK 308


>gi|296532542|ref|ZP_06895255.1| integrase/recombinase XerD [Roseomonas cervicalis ATCC 49957]
 gi|296267143|gb|EFH13055.1| integrase/recombinase XerD [Roseomonas cervicalis ATCC 49957]
          Length = 294

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/312 (28%), Positives = 142/312 (45%), Gaps = 40/312 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L  ERG ++ TL +Y  D      F       +    T+       +R +++  
Sbjct: 6   EAFLEMLAAERGAARNTLAAYRADLEDVAGF------ARRQGGTLAGADTELLRRYLAGL 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +  R+  R LS ++ F ++L    +  +     + + ++ + +P+AL  ++   L+
Sbjct: 60  TDAGLSPRTAARRLSALRQFYRFLAAEGVRADDPTEILDSPRQPSRVPKALRREEVEALL 119

Query: 139 DNVLLHTSHETKWIDARN---SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           D         T+    R    +A+L LLY  GLR SE +SL  + +  D   + ++GKG+
Sbjct: 120 DAA-------TRLPGKRGPLATALLELLYCSGLRASELVSLPARALAQDSPLVLVRGKGN 172

Query: 196 KIRIVPLLPSVRKAILEYYD-------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           K R+VP+    R A L   D       L P            RG  G  L        ++
Sbjct: 173 KERLVPISERARLAALSLQDPKKPSKWLFPS-----------RGAAGH-LTRQSLLLLVK 220

Query: 249 QLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           Q     GL P   + H LRHSFATHLL  G DLR++Q +LGH  ++TTQIYT V  +   
Sbjct: 221 QAALAAGLDPAKLSPHVLRHSFATHLLEGGADLRALQMLLGHADIATTQIYTRVLEER-- 278

Query: 308 DWMMEIYDQTHP 319
             + +I +  HP
Sbjct: 279 --LRQIVETHHP 288


>gi|152992017|ref|YP_001357738.1| site-specific DNA tyrosine recombinase XerD [Sulfurovum sp.
           NBC37-1]
 gi|151423878|dbj|BAF71381.1| site-specific DNA tyrosine recombinase XerD [Sulfurovum sp.
           NBC37-1]
          Length = 271

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 145/303 (47%), Gaps = 49/303 (16%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + + + + L  LT+ SY  D RQ          E+   + + +L  T++  F+S    + 
Sbjct: 10  EYISVTKALDALTISSYLGDLRQL---------EEAVQKPLTKLDTTDVLKFLSTFENK- 59

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ---ALTLVD 139
              R+L R LS I +F  +   +  T E   + M  + K+  LP+ L+ ++    ++L+D
Sbjct: 60  ---RTLNRKLSSINTFFHFCHLQNFTHEKIRIPMAKVPKN--LPKYLSPEEIMEGISLID 114

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                    +  I  R+ A++  LY  G RISEAL+    +I++    +R   KG+K R+
Sbjct: 115 R--------SSTIGLRDYALILFLYASGCRISEALNAQRSDILEGWLKIRF-AKGEKERV 165

Query: 200 VPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           VPL P   +A+  Y    D+    L LN +      I    +           +++YLG+
Sbjct: 166 VPLAPIAIEAVEAYLQAQDMSSSYLWLNYRAEQLSRISAYKI-----------VKKYLGV 214

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRHSFA+ L+  G DLR +Q +LGH  L TTQIYT++  +N  D M+     
Sbjct: 215 ----SPHVLRHSFASSLIIGGADLRVVQELLGHSSLETTQIYTHIQKQNLQDTMI----H 266

Query: 317 THP 319
            HP
Sbjct: 267 YHP 269


>gi|332974597|gb|EGK11517.1| site-specific tyrosine recombinase XerC [Kingella kingae ATCC
           23330]
          Length = 302

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 86/253 (33%), Positives = 121/253 (47%), Gaps = 18/253 (7%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q +   SL R L+  K +  YL        S I  +R  K    LPRA++ +        
Sbjct: 62  QGLNASSLARKLTVWKQYALYLCDIGYWEHSPIATLRAPKLPQRLPRAIDREPL-----G 116

Query: 141 VLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            LL+ S E+   +  R+ AI+ L YG GLR+SE  +L   +I      + +QGKG+K R 
Sbjct: 117 ALLNQSPESDDTLAIRDHAIVELFYGSGLRLSELRALNLHDIELTAGWVSVQGKGNKQRQ 176

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPL      A+  +   CP     N +  LF G  G  L+       +       G    
Sbjct: 177 VPLTRHCIDALHTWLANCPAQ---NGETALFTGRYGSRLSTRQIASRLAFWAEQRGSLQH 233

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T H LRHSFA HLL    DLR++Q +LGH  LS+TQIYT ++     D + ++YDQ HP
Sbjct: 234 ITPHMLRHSFAGHLLQASQDLRAVQDLLGHSSLSSTQIYTKLDL----DHLAQVYDQAHP 289

Query: 320 -----SITQKDKK 327
                + + KD+K
Sbjct: 290 RARRQTTSTKDEK 302


>gi|194364318|ref|YP_002026928.1| site-specific tyrosine recombinase XerD [Stenotrophomonas
           maltophilia R551-3]
 gi|194347122|gb|ACF50245.1| tyrosine recombinase XerD [Stenotrophomonas maltophilia R551-3]
          Length = 325

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 98/325 (30%), Positives = 155/325 (47%), Gaps = 25/325 (7%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
             LPE+ + + L+  Q +L  +  E GL++ TL SY  D    L  LA +T+ +     +
Sbjct: 15  QQLPELRADDSLRI-QRFLDAIWAENGLARATLDSYRRD----LEGLARWTDGREG--GL 67

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
             +    +  +++ R       RS  R LS +++F     +R   +E     +   K   
Sbjct: 68  AGIERPGLFDYLAWRTRHGWSPRSNARLLSALRAFFADGVRRGDRSEDPSALLDPPKLPR 127

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            LP+AL E Q    +D +L     ++  +  R+ A+L L+Y  GLR+SE + L    +  
Sbjct: 128 LLPKALAESQ----IDALLAAPDIDSP-LGLRDRAMLELMYAAGLRVSELVLLPATAVNL 182

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN--------LNIQLPLFRGIRG 235
            Q  LR+ GKG K R+VPL    +  +  Y       L          + Q PLF     
Sbjct: 183 RQGVLRVTGKGSKERLVPLGEESQHWLERYLQQSRPQLVGKGKVQALADGQTPLFIEPTL 242

Query: 236 KPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
             L    F   +++  +  G+ P   + H LRHSFATHLL+ G DLR++Q +LGH  LST
Sbjct: 243 HALTRQAFWHLVKRHAQVAGIDPARISPHALRHSFATHLLNRGADLRALQMLLGHSSLST 302

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHP 319
           TQIYT V  ++    + +++ + HP
Sbjct: 303 TQIYTLVAREH----LQKLHARHHP 323


>gi|298206605|ref|YP_003714784.1| putative site-specific recombinase [Croceibacter atlanticus
           HTCC2559]
 gi|83849235|gb|EAP87103.1| putative site-specific recombinase [Croceibacter atlanticus
           HTCC2559]
          Length = 295

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 150/299 (50%), Gaps = 14/299 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +E+  S  T+ +Y  D    L+ L+ +   + +  +I  + Y  IR++I     
Sbjct: 7   FLDYLRLEKKYSIHTINAYNND----LVALSDFVSREFSETSINNIPYALIRSWIISLVD 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             I +R++ R +S +KS+  +L+K +    S ++  ++LK    L    ++K+   ++  
Sbjct: 63  SGISNRTINRKVSSLKSYYSFLQKIEELEVSPLIKHKSLKVEKRLQVPFSKKEVSDVLSG 122

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L++     + D R+ AI+ L Y  G+R SE ++L   +I      +++ GK +K RI+
Sbjct: 123 FTLNS-----FEDYRDKAIVELFYSTGMRRSELINLKLSDINIANHYVKVLGKRNKERII 177

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           PL+ SV   + +Y+++   +   + +  +F   +   +   +  R I      +   +  
Sbjct: 178 PLIESVSLTLRQYFEIKDAEFKESSKW-IFVTSKNDKVYETLVYRIINNYFSKVSSKIKK 236

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           + H LRHSFATHLL  G +L +++ +LGH  L+ TQ+YTN    N    +   Y  +HP
Sbjct: 237 SPHLLRHSFATHLLGEGANLNAVKDLLGHSSLAATQVYTN----NDIAVIKRAYSASHP 291


>gi|297748477|gb|ADI51023.1| hypothetical protein CTDEC_0347 [Chlamydia trachomatis D-EC]
 gi|297749357|gb|ADI52035.1| hypothetical protein CTDLC_0347 [Chlamydia trachomatis D-LC]
          Length = 317

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/249 (33%), Positives = 121/249 (48%), Gaps = 9/249 (3%)

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           IR ++ ++       R+++R LS IKSF ++  K ++  E+    +R  +    LP  L 
Sbjct: 73  IRLYLLEQIQTHHSKRTVRRRLSAIKSFARFCVKNQLIPENPAEMIRGPRLPQELPSPLT 132

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            +Q L L+    L      K    R+  +L L Y  GLRISE  +L   +I      L I
Sbjct: 133 YEQVLALMAAPEL-----DKVTGFRDRCLLELFYSSGLRISEITALNRADIDFQSHLLHI 187

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +GKG K RIVP+     + + +Y +              F    GK L+     R  +Q 
Sbjct: 188 RGKGKKERIVPMTKVAVQWLQDYLNHPDRASVEQDHQACFLNRFGKRLSTRSIDRKFQQY 247

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               GL  S T HT+RH+ ATH L  G DL++IQ +LGH  L TT IYT+V+ K      
Sbjct: 248 LLKTGLSGSITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMK----LK 303

Query: 311 MEIYDQTHP 319
            +I+D+THP
Sbjct: 304 KQIHDETHP 312


>gi|54288326|gb|AAV31614.1| predicted site-specific recombinase [uncultured alpha
           proteobacterium EBAC2C11]
          Length = 315

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 152/312 (48%), Gaps = 20/312 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +LQ +   +  S  TL +Y  D     I L      +   +T+      ++R  I    
Sbjct: 20  GFLQAISAMKAASVNTLSAYRRDLLDCQIGL------ETRAKTLTNCDMDDLRGVIFWWH 73

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +  RS+ R LS ++ F+ +  +  +  ++    + N     S P++L+E + + L+ 
Sbjct: 74  QRDLKPRSVARRLSALRQFMGWAVEDGVRQDNPTTWLDNPSLPMSAPKSLSEVEIIQLLK 133

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              +  + E +    R  A+L +LY  GLR+SE +SL       +  T+ ++GKG + R+
Sbjct: 134 ---MAKTLEPESASLRALAMLEILYATGLRVSELVSLLVVQFRRNPQTILVKGKGGRERL 190

Query: 200 VPLLPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           VPL  + R A    +E  D  P  +  +   P+ RG  G P++     R +++L     +
Sbjct: 191 VPLGETARLAAVRWIECRDSNPAFVQSDYMFPV-RG--GGPMSRHQLARLLKKLAVAADI 247

Query: 257 PLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            +   + H LRHSFATH+L+ G DLRS+QS+LGH  +STTQIYT+   +     +  +  
Sbjct: 248 EVGRVSPHKLRHSFATHMLNRGADLRSLQSLLGHADISTTQIYTSSRPER----LAGLVT 303

Query: 316 QTHPSITQKDKK 327
             HP  +Q+  +
Sbjct: 304 SAHPLASQRQDR 315


>gi|227539590|ref|ZP_03969639.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227240503|gb|EEI90518.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 293

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 154/309 (49%), Gaps = 27/309 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +Q +L  L  E+  S  T+++Y   T +  +F  F  ++ +  +   +  +  IR ++S 
Sbjct: 3   QQRFLNFLRFEKRYSNHTIEAY---THELNVFFTFLQDQGVPEE---EADHRVIRLYLSH 56

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S+ RS+S ++++ K+L++  +T ++ +  ++ LK    LP  + + + + L
Sbjct: 57  LMEEGRQATSVNRSISALRTYYKFLQRESLTDQNPLTLIKALKTPKKLPSVMEKDKMVGL 116

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D +         + D R+  +L LL+G G+R++E L +   +I      + I GK +K 
Sbjct: 117 LDQM---EGAVDSFTDERDYLVLELLFGTGIRLTELLQIKITDIDFYNKNILILGKRNKE 173

Query: 198 RIVPL---LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           R+VP+   L    K  ++  D    D   N    L     GK   P +  R +    RYL
Sbjct: 174 RLVPVNHTLLEKLKIYIQQLDNQKID---NKTAFLIVTKEGKQAYPKMIYRIVH---RYL 227

Query: 255 GLPLST----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            L +ST    + H LRH+FAT LL NG DL +I+ +LGH  L+ TQ+YT+    N  + +
Sbjct: 228 SL-ISTQRKKSPHVLRHTFATALLDNGADLNAIKELLGHAGLAATQVYTH----NSVERL 282

Query: 311 MEIYDQTHP 319
             +Y Q HP
Sbjct: 283 KSVYKQAHP 291


>gi|254796542|ref|YP_003081378.1| tyrosine recombinase XerD [Neorickettsia risticii str. Illinois]
 gi|254589779|gb|ACT69141.1| tyrosine recombinase XerD [Neorickettsia risticii str. Illinois]
          Length = 301

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 152/290 (52%), Gaps = 24/290 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ + +ER  +  T+ SY  D R    FL          + ++  S  ++  +I+  
Sbjct: 10  EQFLEKILVERNATLNTISSYRTDLRLLGAFLK--------KKGLKDASKEDLYGYIADL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R Q++ + +++R  +  + F  +L   KI++ +    +   KK+  LPR L +++ L+L+
Sbjct: 62  RAQQLSNATIRRKTATFRQFFSFLYSEKISSGNPAQTLELPKKTLVLPRYLTKEEVLSLL 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGD 195
               L T         R  AIL +LY  G+R+SE +++   +I   ++ Q  + I GKG 
Sbjct: 122 --TFLETGQPATL---RLYAILEILYSSGMRVSELINMKISDIRPLLNGQQHIIIVGKGR 176

Query: 196 KIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K RI+P     +KAI  L+ Y L  +  N     P   G + +P++     + +++L   
Sbjct: 177 KERILPF---SKKAIQVLKLY-LTSYQSNSPWLFP-GAGRKDRPMSRQRLGQLLKELALK 231

Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             + P   + H +RHSFATHLL NG D++ +Q +LGH +++TTQIYT+++
Sbjct: 232 CSIDPKRISPHVIRHSFATHLLDNGMDIKVVQDLLGHAQITTTQIYTHIS 281


>gi|206895374|ref|YP_002247059.1| tyrosine recombinase XerC [Coprothermobacter proteolyticus DSM
           5265]
 gi|206737991|gb|ACI17069.1| tyrosine recombinase XerC [Coprothermobacter proteolyticus DSM
           5265]
          Length = 286

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 92/293 (31%), Positives = 147/293 (50%), Gaps = 38/293 (12%)

Query: 19  QNW-------LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           +NW       L  LE   G S+ TL++Y  D +Q+ +F                L    +
Sbjct: 4   ENWAELLNQFLNTLEAS-GYSEHTLKAYYVDLKQYFMFTT-------------SLDQKTV 49

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
             ++     + +   SL R LS ++ F  +LKK+    E  I+ +   K    +PR +  
Sbjct: 50  DDYLMHLSRKGMAPTSLNRFLSSLRKFCSFLKKQGY--EMPIMELSGFKTGLKVPRVV-- 105

Query: 132 KQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
                L D++  LL     T  I+ R+ A+++ L G G RISEALSL  ++I    ++ +
Sbjct: 106 -----LRDDISKLLELPENTP-IELRDKALVWFLLGTGTRISEALSLKVEDIDFRTASCQ 159

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG+K R V  +PS    +L+ Y +  F+L    + PLF  ++G+ L     +  + +
Sbjct: 160 VLGKGNKKRTV-YIPSKALKLLKRY-IEVFNLT---EGPLFLNMQGQGLTDRGARYILHK 214

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           + +  GL      HTLRH+FAT+LL  G +LR IQ +LGH  L +TQIYT+V+
Sbjct: 215 ISKKYGLRDLVHPHTLRHTFATNLLEEGANLREIQELLGHSSLRSTQIYTHVS 267


>gi|91974776|ref|YP_567435.1| tyrosine recombinase XerD [Rhodopseudomonas palustris BisB5]
 gi|91681232|gb|ABE37534.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris
           BisB5]
          Length = 351

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 137/299 (45%), Gaps = 28/299 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  +  E+G S  T+ +Y  D    L  L+ Y     + ++I       +R +++    
Sbjct: 45  FLDMIAAEQGASANTIDAYRRD----LADLSHYLTR--SRKSIASADTEALRGYLADLDA 98

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     S+ R LS ++   ++L   +I  +     +   K+   LP+ L+    +  VD 
Sbjct: 99  RGFKSSSVARRLSALRHLFRFLLSERIRVDDPAAILSGPKRGRGLPKVLS----IADVDR 154

Query: 141 VLLHTSHETKWID-------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           +L +   + +  D       AR   +L +LY  GLR+SE +SL       D   + ++GK
Sbjct: 155 LLGYARQQAEAADGAGGVRAARLYCLLEVLYATGLRVSELVSLPSSAARGDARMIVVRGK 214

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV----------F 243
           GDK R+VPL  S ++A+  Y                      K L P            F
Sbjct: 215 GDKERLVPLNHSAKQAMTRYLATAAAAEKAAATATKAGSKGSKWLFPSFGESGHLTRQHF 274

Query: 244 QRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            R ++ L    GL P   + H LRH+FA+HLL NG DLR +Q++LGH  +STTQIYT+V
Sbjct: 275 ARDLKDLAGRAGLSPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHV 333


>gi|15605070|ref|NP_219854.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           D/UW-3/CX]
 gi|76789073|ref|YP_328159.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           A/HAR-13]
 gi|166154559|ref|YP_001654677.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           434/Bu]
 gi|166155434|ref|YP_001653689.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|237802772|ref|YP_002887966.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237804694|ref|YP_002888848.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255348711|ref|ZP_05380718.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis 70]
 gi|255503251|ref|ZP_05381641.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis 70s]
 gi|255506929|ref|ZP_05382568.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           D(s)2923]
 gi|301335822|ref|ZP_07224066.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           L2tet1]
 gi|34222768|sp|O84351|XERC_CHLTR RecName: Full=Tyrosine recombinase xerC
 gi|123606950|sp|Q3KM11|XERC_CHLTA RecName: Full=Tyrosine recombinase xerC
 gi|254799329|sp|B0B7R6|XERC_CHLT2 RecName: Full=Tyrosine recombinase xerC
 gi|254799330|sp|B0BBY1|XERC_CHLTB RecName: Full=Tyrosine recombinase xerC
 gi|3328768|gb|AAC67942.1| Integrase/recombinase [Chlamydia trachomatis D/UW-3/CX]
 gi|76167603|gb|AAX50611.1| DNA integration/recombination/inversion protein [Chlamydia
           trachomatis A/HAR-13]
 gi|165930547|emb|CAP04042.1| DNA recombination protein [Chlamydia trachomatis 434/Bu]
 gi|165931422|emb|CAP06996.1| DNA recombination protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|231272994|emb|CAX09906.1| DNA recombination protein [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274006|emb|CAX10799.1| DNA recombination protein [Chlamydia trachomatis B/Jali20/OT]
 gi|289525388|emb|CBJ14865.1| DNA recombination protein [Chlamydia trachomatis Sweden2]
 gi|296434940|gb|ADH17118.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           E/150]
 gi|296435866|gb|ADH18040.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           G/9768]
 gi|296436792|gb|ADH18962.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           G/11222]
 gi|296437726|gb|ADH19887.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           G/11074]
 gi|296438660|gb|ADH20813.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           E/11023]
 gi|297140225|gb|ADH96983.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           G/9301]
          Length = 315

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/249 (33%), Positives = 121/249 (48%), Gaps = 9/249 (3%)

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           IR ++ ++       R+++R LS IKSF ++  K ++  E+    +R  +    LP  L 
Sbjct: 71  IRLYLLEQIQTHHSKRTVRRRLSAIKSFARFCVKNQLIPENPAEMIRGPRLPQELPSPLT 130

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            +Q L L+    L      K    R+  +L L Y  GLRISE  +L   +I      L I
Sbjct: 131 YEQVLALMAAPEL-----DKVTGFRDRCLLELFYSSGLRISEITALNRADIDFQSHLLHI 185

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +GKG K RIVP+     + + +Y +              F    GK L+     R  +Q 
Sbjct: 186 RGKGKKERIVPMTKVAVQWLQDYLNHPDRASVEQDHQACFLNRFGKRLSTRSIDRKFQQY 245

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               GL  S T HT+RH+ ATH L  G DL++IQ +LGH  L TT IYT+V+ K      
Sbjct: 246 LLKTGLSGSITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMK----LK 301

Query: 311 MEIYDQTHP 319
            +I+D+THP
Sbjct: 302 KQIHDETHP 310


>gi|197104212|ref|YP_002129589.1| probable integrase/recombinase DNA recombination protein
           [Phenylobacterium zucineum HLK1]
 gi|196477632|gb|ACG77160.1| probable integrase/recombinase DNA recombination protein
           [Phenylobacterium zucineum HLK1]
          Length = 305

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 144/307 (46%), Gaps = 21/307 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ + +ER  ++ TL +Y  D      FLA    +      +   +  ++ A+ +  
Sbjct: 10  EAFLEMMAVERAAARNTLSAYGRDLADAAGFLAGLGRD------LSDATAEDVEAYFADL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   +  R  + ++ F +++       +     +   KK  SLP+ L+ ++    +
Sbjct: 64  GARGLSAATAARRRAAVRQFYRFVLGEGWRGDDPSRRVEAPKKGRSLPKVLSREE----M 119

Query: 139 DNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           D ++           A R + ++ L Y  GLRISE   LT   +  D + L ++GKG K 
Sbjct: 120 DRLIAAAGARDGASHALRLACMVELAYASGLRISELTGLTLAALARDPAYLIVKGKGGKE 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           R+ PL    R A+  Y ++ P  L      N  L   RG +G  L P  F + + +    
Sbjct: 180 RLAPLNEPARAAVKAYLEVRPAFLPKGDTANPWLFPSRG-KGGRLTPRRFAQLLDEAAAD 238

Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+ P   + H LRH+FATHLL  G DLR +Q +LGH  ++TTQIYT+V S    D + E
Sbjct: 239 AGIDPGRVSPHVLRHAFATHLLEGGADLRVVQKLLGHADIATTQIYTHVAS----DRLSE 294

Query: 313 IYDQTHP 319
           +    HP
Sbjct: 295 VVRSKHP 301


>gi|254293147|ref|YP_003059170.1| integrase family protein [Hirschia baltica ATCC 49814]
 gi|254041678|gb|ACT58473.1| integrase family protein [Hirschia baltica ATCC 49814]
          Length = 308

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 149/310 (48%), Gaps = 30/310 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ +   RG S+ TL +Y  D      FLA   +  +       LS     A++    +
Sbjct: 13  FLEMMSASRGASQNTLDAYRRDLSDASEFLA--DKGGLVGANSENLS-----AYMRDLDS 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   +  R LS +KSF K+  +     +     +   +   ++P  L++++ + L+  
Sbjct: 66  RGMAKSTAARRLSSLKSFFKFELEEGEREDDPTSRLDGPQIIRNIPDVLSKEEVVALI-- 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-LRIQGKGDKIRI 199
              + +   +  D R+  IL LLY  GLR SEA  L   ++   + T L I+GKGDK R+
Sbjct: 124 ---NAADGDEPSDIRDRCILELLYSAGLRASEACELPMSSLPRGKDTALIIRGKGDKDRL 180

Query: 200 VPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVF-QRYIRQLRRYL 254
            PL    R A+ +++ +     P +    I        RGK    G F +R + Q+   L
Sbjct: 181 TPLGKPARDALEQWFSVREKFLPKNETRKIADKYVFPSRGKT---GHFTRRRLAQILENL 237

Query: 255 GL-----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                  P   T H LRH+FATHLLS G DLR++Q +LGH  +STTQIYT+V +    D 
Sbjct: 238 ATKAAISPKRVTPHALRHAFATHLLSGGADLRAVQMLLGHADISTTQIYTHVMT----DE 293

Query: 310 MMEIYDQTHP 319
           + ++ +  HP
Sbjct: 294 LQKLLEAAHP 303


>gi|225164361|ref|ZP_03726626.1| integrase family protein [Opitutaceae bacterium TAV2]
 gi|224801041|gb|EEG19372.1| integrase family protein [Opitutaceae bacterium TAV2]
          Length = 329

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 98/320 (30%), Positives = 153/320 (47%), Gaps = 41/320 (12%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAF-----YTEEKITIQTIRQLSYTEIRAFI 75
           +L  L  ER  S  T+++Y      F  +L          E        +L+  ++R F+
Sbjct: 28  FLDYLARERRYSVYTVRNYRQAFEDFYRWLVSSGLRDAANESAASLAPDKLTPRDLRDFV 87

Query: 76  --SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
              +RR  +   R+L   +SG++SF KY  +    + + ++ +   K    LP+ L E+Q
Sbjct: 88  IEGQRRFDR---RTLHNHVSGLRSFYKYWLRHGRVSRNPLVGLALPKLEKRLPKFLTEQQ 144

Query: 134 -------ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
                     L+DNV   T   T W   R+   + LLYG GLR+SE  +L    I     
Sbjct: 145 MKLLLSGPQRLLDNVADITPF-TAW---RDRLAMELLYGGGLRVSELTALDYGQIDFTSG 200

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
             R+ GKG K R+ PL       ++++ +   +  + +   P+        + P   +  
Sbjct: 201 VARVLGKGRKERLCPLGKVALAVLVKWKN--EYARDTSPAAPVL-------VTPEHERMP 251

Query: 247 IRQ----LRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           +RQ    L+RYL   GLP   + H LRHS+ATHLL+ G DLR +Q +LGH  L+TTQIYT
Sbjct: 252 VRQVQLMLKRYLALAGLPTDLSPHKLRHSYATHLLNAGADLRLVQELLGHASLNTTQIYT 311

Query: 300 NVNSKNGGDWMMEIYDQTHP 319
           +V+       + +IYD+ HP
Sbjct: 312 HVSIAR----LRDIYDKAHP 327


>gi|167627355|ref|YP_001677855.1| phage integrase family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597356|gb|ABZ87354.1| phage integrase family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 293

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 149/312 (47%), Gaps = 35/312 (11%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N+L NL   +  S+ T+ +Y  D  Q            I  + I +L   +I  ++ K  
Sbjct: 9   NFLDNLLYLKNYSQETINNYRRDLLQL--------NSSIVDKDITKLENNDILMWVKKLH 60

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q    ++L+R LS ++SF  +L   ++   +    ++  K S  LP+A+N  +   L+D
Sbjct: 61  AQGNSSKTLQRKLSSLRSFFNFLINSELIKNNPTTGIKAPKSSKKLPKAVNTDELAYLLD 120

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                    +  I+ R+ A   LLY CG+R+SE  S+  ++I  +Q ++R+ GKG+K R+
Sbjct: 121 ------IKPSNNIETRDIACFDLLYSCGIRLSELSSIELKDININQKSIRVIGKGNKERV 174

Query: 200 VPL----LPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           V      L ++ + +     Y   C F         LF    G+ L     Q+ I    +
Sbjct: 175 VYFGSKTLINLNRWLNTRDTYSPKCNF---------LFISQNGEHLTNRSIQKRIEIFAQ 225

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                     H LRHSFATH+L +  DL +++ +LGH  +S+TQIYT++N +     +  
Sbjct: 226 KYATK-HIHPHMLRHSFATHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQ----LAS 280

Query: 313 IYDQTHPSITQK 324
           ++D+ HP   +K
Sbjct: 281 VFDKAHPRAKKK 292


>gi|115380783|ref|ZP_01467658.1| integrase [Stigmatella aurantiaca DW4/3-1]
 gi|115362213|gb|EAU61573.1| integrase [Stigmatella aurantiaca DW4/3-1]
          Length = 253

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/241 (34%), Positives = 120/241 (49%), Gaps = 22/241 (9%)

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           RS  R L+ ++ F ++L   K   +    ++   + +  LP  L     L  V+  LL  
Sbjct: 11  RSQARHLAAVRGFHRFLIAEKHAEKDPTEDLDTPRSARKLPSFLT----LEEVEQ-LLAA 65

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
             E      R+ A+L LLY  GLR+SE  SL   ++      L  +GKG K R+VP+  S
Sbjct: 66  PDERHPTGMRDKAMLELLYATGLRVSELCSLGINDVQLGAGYLVAKGKGSKERVVPV-GS 124

Query: 206 VRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQR--YIRQLRRYL---GLPL 258
           V    ++ Y   P    L       LF   RG     G F R  + + L+RY    G+  
Sbjct: 125 VAVEKVQAYLGGPRQHLLGKRQSRSLFITPRG-----GAFTRQGFWKLLKRYALKAGIRK 179

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRHSFATHL+  G DLR++Q++LGH  L+TTQIYT+VNS      +  +YD+ H
Sbjct: 180 PISPHKLRHSFATHLVERGADLRAVQAMLGHADLATTQIYTHVNSAR----LRAVYDEHH 235

Query: 319 P 319
           P
Sbjct: 236 P 236


>gi|116328183|ref|YP_797903.1| tyrosine site-specific recombinase XerC [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116330907|ref|YP_800625.1| tyrosine site-specific recombinase XerC [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116120927|gb|ABJ78970.1| Tyrosine site-specific recombinase XerC [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116124596|gb|ABJ75867.1| Tyrosine site-specific recombinase XerC [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 311

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 162/322 (50%), Gaps = 30/322 (9%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
            P+  S  L +  + ++  L+IE+  S+ T+ +Y  D +    F  F  +E++ I    Q
Sbjct: 8   FPKFPSSFLNETAEKFINYLKIEKNYSQNTINAYSIDLK---FFFEFCEKEQLDIL---Q 61

Query: 66  LSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK-SN 123
           +   +IR++ S   + Q +  RS  R LS +++F K L  R    ESN     +  K   
Sbjct: 62  VEPVDIRSYFSYLAKEQDLDRRSQSRKLSSLRTFYKVLL-RDDQIESNPATRISFPKVRK 120

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            +P+     +   +++         ++ ++ R+ A++ +LY  GLR+ E ++    ++  
Sbjct: 121 EVPKNFRINETEEILE---FEAERTSEILEIRDKAMIEVLYSSGLRVFELVNAKLGSLSK 177

Query: 184 DQSTLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           D + L++ GKG K R V      + S+R+  LEY ++   D+       +F   +GK L 
Sbjct: 178 DLTVLKVLGKGQKERFVYFGKEAVDSLRR-YLEYRNVSFPDVK-----EIFLNQKGKKLT 231

Query: 240 P-GVFQRYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
             GV  RYI  + R+ +G     T H  RH+FAT LL  G D+R++Q +LGH  LSTTQI
Sbjct: 232 TRGV--RYILNERRKKMGWEKKITPHKFRHTFATDLLDAGADIRAVQELLGHSSLSTTQI 289

Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319
           Y +V+ +     + E+Y + HP
Sbjct: 290 YLSVSKEK----IKEVYRKAHP 307


>gi|71064781|ref|YP_263508.1| tyrosine recombinase XerC subunit [Psychrobacter arcticus 273-4]
 gi|71037766|gb|AAZ18074.1| tyrosine recombinase XerC subunit [Psychrobacter arcticus 273-4]
          Length = 345

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 149/323 (46%), Gaps = 25/323 (7%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ELL     WL  L + R  S  TL +Y     Q  +FL      +    T  +    ++ 
Sbjct: 37  ELLAPVHRWLNVLSV-RNHSPHTLTAYFAGLNQLALFL------RGKCLTWTRCDKRQLA 89

Query: 73  AFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
             IS+R  + K+   S+++ LS I+ F  +L +  +   +     +  +    LP   + 
Sbjct: 90  QHISQRLDEDKLALASVQQELSAIRHFYGWLIEEDLARINPTTGYQLKRSPRPLPSIADV 149

Query: 132 KQALTLVDNVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
                L+D  +  T  + + W+  R+ A+  LLY  GLR+ E ++L   ++      +R+
Sbjct: 150 DLLTQLLDQEIPDTPEQARLWL--RDKAMFELLYSSGLRVGELVALDIADVDLADLRVRV 207

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            GKG+K R+VPL      AI  Y       +   D  L I   L     G  L+    Q+
Sbjct: 208 TGKGNKTRLVPLGIKAADAIRRYLPHRNLWVEQMDTALFISEKL-----GTRLSTRAVQQ 262

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            ++      G+  +   H LRH FA+H+LS  GDLR++Q +LGH  +STTQIYT+V+   
Sbjct: 263 RLKVAATRAGIAQNMYPHLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTHVDFAK 322

Query: 306 GGDWMMEIYDQTHPSITQKDKKN 328
               + ++YD+ HP  T   K +
Sbjct: 323 ----LTQVYDRAHPRATHASKDS 341


>gi|126176181|ref|YP_001052330.1| tyrosine recombinase XerC [Shewanella baltica OS155]
 gi|125999386|gb|ABN63461.1| tyrosine recombinase XerC [Shewanella baltica OS155]
          Length = 306

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 153/316 (48%), Gaps = 33/316 (10%)

Query: 21  WLQNLE----IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           WLQ  E     ER LS  T+++Y  +  +    L     + + +  + +  + ++   ++
Sbjct: 15  WLQTFERYLSTERQLSAHTVRNYLYELNRGSDLLP----DGVNLLNVSREHWQQV---LA 67

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           K   + +  RSL   LS +K + ++L +  +   +    +   K++  LP+ ++      
Sbjct: 68  KLHRKGLSPRSLSLCLSAVKQWGEFLLREGVIELNPAKGLSAPKQAKPLPKNIDVDAISH 127

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+D         T  +  R+ A++ L Y  GLR++E  +L   ++  D   +R+ GKG+K
Sbjct: 128 LLD------IEGTDPLSLRDKAMMELFYSSGLRLAELAALNLSSVQYDLKEVRVLGKGNK 181

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLR 251
            RIVP+      A+L +       LN   Q+P     LF   +GK L+    Q  + +  
Sbjct: 182 ERIVPVGRLAIAALLNW-------LNCRKQIPCEDNALFVTEKGKRLSHRSIQARMAKWG 234

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +   L +    H LRHSFATH+L    DLR++Q +LGH  L+TTQIYT+++ ++    + 
Sbjct: 235 QEQALSVRVHPHKLRHSFATHMLEASADLRAVQELLGHANLATTQIYTSLDFQH----LA 290

Query: 312 EIYDQTHPSITQKDKK 327
           ++YD  HP   +   K
Sbjct: 291 KVYDNAHPRAKKTQDK 306


>gi|67458963|ref|YP_246587.1| site-specific tyrosine recombinase XerD [Rickettsia felis
           URRWXCal2]
 gi|75536599|sp|Q4UM01|XERD_RICFE RecName: Full=Tyrosine recombinase xerD
 gi|67004496|gb|AAY61422.1| Tyrosine recombinase XerD [Rickettsia felis URRWXCal2]
          Length = 306

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 151/298 (50%), Gaps = 28/298 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L  ER LSK ++ SY+ D   F  +LA     ++ I T        +R +I    +
Sbjct: 7   FLEMLLAERALSKNSILSYKRDLFDFQNYLAKQRLSELNITT------ENVRDWIEYLAS 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS+ R +S IKS+ ++L     T  + +LN+   K  N LP  L+  Q    + +
Sbjct: 61  NDLQARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIDQ----IKS 116

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-------LRIQGK 193
           +L + S +      R +A+++LLY  GLR+SE +SL   +I+ ++++         + GK
Sbjct: 117 LLEYCSQDNSPEGIRLNAMIHLLYASGLRVSELVSLKLTDILTNKTSKGEVRKIFSVLGK 176

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LF--RGIRGKPLNPGVFQRY 246
           G+K R++ +      +I +Y  L   D+ +N   P     LF    + G  +    F   
Sbjct: 177 GNKERVIVINEQAVISIAKY--LAIRDVFVNKAKPKNLIYLFPSSALAGY-MTRQNFAIL 233

Query: 247 IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           ++    Y  L P   + H LRHSFA+HLL  G DLR IQ +LGH  +STTQIYT++ +
Sbjct: 234 LKSAALYANLNPEHISPHILRHSFASHLLEGGADLRVIQGLLGHADISTTQIYTHLQT 291


>gi|154491730|ref|ZP_02031356.1| hypothetical protein PARMER_01346 [Parabacteroides merdae ATCC
           43184]
 gi|154087971|gb|EDN87016.1| hypothetical protein PARMER_01346 [Parabacteroides merdae ATCC
           43184]
          Length = 302

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 139/282 (49%), Gaps = 8/282 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L  L  ER  S+ T+ +Y  D +QF  F+    E+K  I    ++    +R +I   
Sbjct: 6   DSFLDYLRYERNYSEYTINAYFKDLQQFEDFVK---EKKEGIFVPEEVDTDIVRNWIISL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
              KI   S+ R LS +KSF K+L K+   + + +  +   K    LP  + EK    L+
Sbjct: 63  LDNKISPVSVNRKLSSLKSFFKFLMKQGFVSVNPLRFVTGPKTKKPLPTFVKEKDMEELL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D        +  +   R+  +L +LY  G+R SE + L   +I  D   +R+ GK +K R
Sbjct: 123 DG----DGFDEDFEGVRDRLVLEMLYDTGVRRSELVGLQDTDIDYDAMLIRVTGKRNKQR 178

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++P    ++  +L Y ++   +++        R   G+ L+ G+    +++    +    
Sbjct: 179 LIPFAERLKNLMLAYTEVRNREVDAGCGWFFVRK-NGEQLSTGILYTIVKKRLSDIPTLA 237

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             + H LRHSFAT +L+NG +L +++ +LGH  L++T IYT+
Sbjct: 238 KCSPHVLRHSFATSMLNNGAELNAVKELLGHSSLASTSIYTH 279


>gi|323500158|ref|ZP_08105103.1| site-specific tyrosine recombinase XerC [Vibrio sinaloensis DSM
           21326]
 gi|323314787|gb|EGA67853.1| site-specific tyrosine recombinase XerC [Vibrio sinaloensis DSM
           21326]
          Length = 310

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 151/306 (49%), Gaps = 22/306 (7%)

Query: 25  LEIERGLSKLTLQSYECDTR---QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L  E+GLS  T ++Y+       Q L+ L      ++    +RQL+   +R  +      
Sbjct: 23  LRSEKGLSLHTQRNYKQQLETMAQHLVQLGLKDWSQVDSAWVRQLASKGMRDGMKAS--- 79

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                SL   LS ++SF  +L  R   + +    +   +K   LP+ L+  +   L++  
Sbjct: 80  -----SLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVGQLLE-- 132

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
                +E   +  R+ A++ ++YG GLR++E +S+  +++      +R+ GKGDK R VP
Sbjct: 133 ----VNEDDPLSVRDRAMMEMMYGAGLRLAELVSINVRDVSFTSGEIRVVGKGDKERKVP 188

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
                 + + ++  +     N + Q  LF    G  ++    Q+ + +  +   +    +
Sbjct: 189 FSGMAAEWVNKWLKVRASLANSDEQ-ALFVSKLGVRISHRNVQKRMAEWGQKQAVASHIS 247

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ ++    + E+YDQ HP  
Sbjct: 248 PHKLRHSFATHVLESSNNLRAVQELLGHENISTTQIYTHLDFQH----LAEVYDQAHPRA 303

Query: 322 TQKDKK 327
            ++  K
Sbjct: 304 RKRGNK 309


>gi|237746874|ref|ZP_04577354.1| tyrosine recombinase XerD [Oxalobacter formigenes HOxBLS]
 gi|229378225|gb|EEO28316.1| tyrosine recombinase XerD [Oxalobacter formigenes HOxBLS]
          Length = 303

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 141/283 (49%), Gaps = 11/283 (3%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            + + + +E GLS+ TL +Y  D + F    A + E+      + +++   + ++   R 
Sbjct: 5   EFCETVWLEDGLSQNTLDAYRRDMQLF----AQWLEKNGPGTRLLEVTPDILNSYFLARH 60

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           ++     S  R L+ +K F +   +      +    M   K+    P  L+E Q    V+
Sbjct: 61  SESKAT-SANRRLTVLKRFYRLQFRLGRLAVNPCQKMHAAKQPARFPGTLSETQ----VE 115

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           ++L+    E   +  R+  ++ L+Y  GLR+SE ++L    +  ++  LRI GKG K R+
Sbjct: 116 SLLIAPRVENP-LGLRDRTMIELMYASGLRVSELVTLKLVEVGMNEGVLRILGKGSKTRL 174

Query: 200 VPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP     R  I  Y  +  PF L   +   LF   RG  +   +F   IR+     G+  
Sbjct: 175 VPFGEEARIWIERYMRESRPFILAGKVSDYLFVTARGTSMTRQMFWTLIRKYALQSGIHE 234

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 235 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHV 277


>gi|332534422|ref|ZP_08410262.1| tyrosine recombinase XerC [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036156|gb|EGI72631.1| tyrosine recombinase XerC [Pseudoalteromonas haloplanktis ANT/505]
          Length = 314

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 138/267 (51%), Gaps = 41/267 (15%)

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSL 125
            IR +    R++++  R++   LS I+S  K+LK + I  +S+  N    ++  K +  L
Sbjct: 65  HIRRYSMALRSKQLSGRTISLKLSCIRSLYKFLKAKNIAEQSHYHNPAIGIKGPKFAKPL 124

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P+ L+  Q   L++        + + +  R+ A++ L+Y  GLRISE +    Q+I    
Sbjct: 125 PKNLDVDQMARLLEIP------DDEPLAIRDKAMMELMYSSGLRISELVGANMQDISAAN 178

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF-- 243
             + ++GKG+K R++P+      A+ ++         L I+ P F     KP    VF  
Sbjct: 179 GEILVRGKGNKERLIPVGTKALDALKKW---------LTIR-PQF----AKPDEIAVFLS 224

Query: 244 ----QRYIRQLRRYL-------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
               +  IRQ+R  +       G+      H LRHSFA+H+L + GDLR++Q +LGH  L
Sbjct: 225 SQKNRISIRQVRLRMQEWGIKQGISSQVHPHKLRHSFASHILESSGDLRAVQELLGHSSL 284

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHP 319
           S TQ+YT+++ ++    + ++YD THP
Sbjct: 285 SATQVYTHLDFQH----LAKVYDNTHP 307


>gi|295396350|ref|ZP_06806516.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030]
 gi|294970790|gb|EFG46699.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030]
          Length = 329

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 145/317 (45%), Gaps = 15/317 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSY 68
           +S E L     +   L + +  S+ T+++Y  D    + FLA     + I +  I     
Sbjct: 19  LSAEYLDALDRFHNELTVHKNASEHTVRNYIADATNLMEFLARDGNGDPIHLADI---EI 75

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R ++     Q     +L R ++GI+SF  +  +  IT  +    +   KK+  LP  
Sbjct: 76  GNLRQWLLHLSAQGASPGTLARRIAGIRSFFTFTTRAGITATNPASRLSTPKKATRLPTV 135

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDA------RNSAILYLLYGCGLRISEALSLTPQNIM 182
           L +     ++       + + K          R+ A++ LLY  G+R+SE ++L   ++ 
Sbjct: 136 LQQSHTEDVLTQPFEPPAEDAKLTKTQRAARTRDIALVELLYATGMRVSELVNLDTTDVD 195

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
                + + GKG+K R +P     ++A+ E+ ++    L    Q  LF G+RG  +N   
Sbjct: 196 WTAGLITVLGKGNKQRRIPFGGPSQRALTEWLEVRNH-LASEGQEALFVGVRGGRINQRQ 254

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +  + +           + H LRHS ATH++ NG D+R +Q  LGH  LS+TQIYT+V+
Sbjct: 255 VRDVVHKATAKRAKSPEISPHGLRHSAATHMVENGADIRQVQEFLGHATLSSTQIYTHVS 314

Query: 303 SKNGGDWMMEIYDQTHP 319
                  + + Y Q HP
Sbjct: 315 LGK----LKDSYTQAHP 327


>gi|167618124|ref|ZP_02386755.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis
           Bt4]
          Length = 312

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 136/278 (48%), Gaps = 17/278 (6%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI-QTIRQLSYTEIRAFISKRRTQKIGD 85
           +E GLS+ TL +Y  D + F  +LA      +++ +T R +    +  +I+ R   K   
Sbjct: 33  LEHGLSRNTLDAYRRDLQLFAQWLA--ARHAVSLDRTERPM----LEGYIAARSDGKAT- 85

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            S  R LS  + +  +  +         L + + K++   P  L+E Q   L+    + T
Sbjct: 86  -SSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDT 144

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
                 +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+VP    
Sbjct: 145 P-----LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPF-GE 198

Query: 206 VRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           V    +E Y  D  P  L       LF   RG  +    F   I++  +   +    + H
Sbjct: 199 VAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPH 258

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           TLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 259 TLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 296


>gi|251772344|gb|EES52912.1| phage integrase family protein [Leptospirillum ferrodiazotrophum]
          Length = 336

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 119/251 (47%), Gaps = 7/251 (2%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+ +   +     S+ R LS ++ F  +LK +    E     +   + +  LP  L E +
Sbjct: 87  FVKRLHDRGYAPSSIARILSSLRGFYGFLKTQGHIAEDPFAGISGPRANRPLPPLLTETE 146

Query: 134 ALTLVD----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           A TLV     N +     E   +  R+ AIL L Y  G+R+SE   L  ++      +LR
Sbjct: 147 AETLVTAPVRNPVPKGGDEGTSL--RDRAILELFYQTGVRLSELCGLLWEDAAPGIVSLR 204

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           ++GKG K R VP++    KA+    +       ++   PLF    G  L+P    R +++
Sbjct: 205 VRGKGGKERRVPVVGEALKALCALREFL-LKSGVSPTGPLFADGDGGALSPWQVSRIVKK 263

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             R  GL  + + H LRHS ATHLL    DLR IQS+LGH  L +TQ Y +         
Sbjct: 264 YAREAGLQKTVSPHALRHSCATHLLDREADLREIQSLLGHASLGSTQRYLHTGLSEIARK 323

Query: 310 MMEIYDQTHPS 320
           + +I D+T P+
Sbjct: 324 LSKIRDETPPA 334


>gi|332299940|ref|YP_004441861.1| Tyrosine recombinase xerC [Porphyromonas asaccharolytica DSM 20707]
 gi|332177003|gb|AEE12693.1| Tyrosine recombinase xerC [Porphyromonas asaccharolytica DSM 20707]
          Length = 407

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 150/296 (50%), Gaps = 12/296 (4%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFL-IFLAFYTEEKITIQTIRQLS 67
           +++ EL +  + +++ L +ER  S LTL +Y      ++   L   ++E       R L 
Sbjct: 5   MLTEELEQTLEAFIEYLRLERNASPLTLNTYRPAITSYMECALELASDEWQPSDADRDL- 63

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
              +R +I ++   ++   ++ ++LS +KSF KYL+ R +   +    +R  K+ ++LP 
Sbjct: 64  ---VRNWIMQQMDDELTSTTVNKNLSAVKSFYKYLQLRGVVDNNPTRYLRGPKREHTLPS 120

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L + Q    ++ +    +    ++  RN  I+  +Y  GLR +E  SL  Q +     +
Sbjct: 121 FLTQAQIEEALETI---PTDPEDFLAVRNRLIIETIYQTGLRRAEVASLETQQVDLASMS 177

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG-VFQRY 246
           LR+ GKG K RIVP   ++++ +  Y  L   +  +      F  ++ +PL+   V+Q  
Sbjct: 178 LRVVGKGRKERIVPFGEALKEQMKAYLTLK--EQKVGQSRYFFVTLKCRPLSGADVYQVV 235

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            + L    GLP    AHTLRHSFAT +L+ G  + SI+ +LGH  L TT  YT+ +
Sbjct: 236 HKALDIVPGLP-RRGAHTLRHSFATEMLNAGAPITSIKELLGHSNLETTTRYTHTS 290


>gi|325919208|ref|ZP_08181257.1| tyrosine recombinase XerD subunit [Xanthomonas gardneri ATCC 19865]
 gi|325550308|gb|EGD21113.1| tyrosine recombinase XerD subunit [Xanthomonas gardneri ATCC 19865]
          Length = 323

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 149/309 (48%), Gaps = 23/309 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L     E G+++ TL SY  D    L  LA + +       +  +    +  ++  R
Sbjct: 28  ERFLDRFWAENGVARQTLDSYRRD----LEGLARWRDG--AGGGLLGVDRAAVFDYLRWR 81

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
              +   RS  R LS +++F     +  + ++     +       SLP+AL E Q     
Sbjct: 82  SEARYSPRSTARLLSTLRAFYGLCLREGLRSDDPTALIDPPHLPRSLPKALTESQI---- 137

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL        +  R+ A+L L+Y  GLR+SE ++L    +   Q  LR+ GKG K R
Sbjct: 138 -EALLAAPDIDSPLGLRDRAMLELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDR 196

Query: 199 IVPLLPSVRKAILEY-YDLCPF------DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           +VPL    +  +  Y ++  P         +++ Q+PLF     +P +   F   +++  
Sbjct: 197 LVPLGEESQHWLERYLHEARPLLASHKPVASVDGQVPLFVDAARQPPSRQQFWALVKRYA 256

Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              G+ P + + H LRHSFATHLL++G DLR++Q +LGH  LSTTQIYT V  ++    +
Sbjct: 257 AVAGIDPDTVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQH----L 312

Query: 311 MEIYDQTHP 319
            +++ + HP
Sbjct: 313 QKLHAKHHP 321


>gi|15639382|ref|NP_218831.1| integrase/recombinase (codV) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025624|ref|YP_001933396.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14]
 gi|3322669|gb|AAC65375.1| integrase/recombinase (codV) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018199|gb|ACD70817.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14]
 gi|291059781|gb|ADD72516.1| tyrosine recombinase XerD [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 306

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 135/242 (55%), Gaps = 20/242 (8%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           FI KR    +  +++ + ++ + +F ++L   ++  ++ + ++   +++ SLPR L+ +Q
Sbjct: 57  FIEKRSAAGVSGKTIAKDMAALHAFYQFLILEQVRPDNPMQDVDAPRRAYSLPRVLSPEQ 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
             T + ++ L T         R+ A+  L+Y  GLR+SEA+SL+  +I   +  L++ GK
Sbjct: 117 VNTFLQSIPLCTPG-----GVRDRALFELIYAAGLRVSEAVSLSLSDIFFAERLLKVTGK 171

Query: 194 GDKIRIVP--------LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQ 244
           G+K R+ P        L+  +R+A + +        N   +  +F   +G  L+  G+++
Sbjct: 172 GNKERMAPFGEQACYFLMQYIREARVRFTS-AKHPENSEKKGAVFLNRQGGRLSRKGIWK 230

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R ++ +    G+   T  HT RHS+ATHLL+ G DL S+Q +LGH  ++TTQ+YT+V  +
Sbjct: 231 R-LQDIEIRSGV--ETHVHTFRHSYATHLLAGGVDLHSVQCLLGHADIATTQVYTHV--E 285

Query: 305 NG 306
           NG
Sbjct: 286 NG 287


>gi|313887245|ref|ZP_07820939.1| putative ribosomal subunit interface protein [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923298|gb|EFR34113.1| putative ribosomal subunit interface protein [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 413

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 150/296 (50%), Gaps = 12/296 (4%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFL-IFLAFYTEEKITIQTIRQLS 67
           +++ EL +  + +++ L +ER  S LTL +Y      ++   L   ++E       R L 
Sbjct: 11  MLTEELEQTLEAFIEYLRLERNASPLTLTTYRPAITSYMECALELASDEWQPSDADRDL- 69

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
              +R +I ++   ++   ++ ++LS +KSF KYL+ R +   +    +R  K+ ++LP 
Sbjct: 70  ---VRNWIMQQMDDELTSTTVNKNLSAVKSFYKYLQLRGVVDNNPTRYLRGPKREHTLPS 126

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L + Q    ++ +    +    ++  RN  I+  +Y  GLR +E  SL  Q +     +
Sbjct: 127 FLTQAQIEEALETI---PTDPEDFLAVRNRLIIETIYQTGLRRAEVASLETQQVDLASMS 183

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG-VFQRY 246
           LR+ GKG K RIVP   ++++ +  Y  L   +  +      F  ++ +PL+   V+Q  
Sbjct: 184 LRVVGKGRKERIVPFGEALKEQMKAYLTLK--ERKVGQSRYFFVTLKCRPLSGADVYQVV 241

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            + L    GLP    AHTLRHSFAT +L+ G  + SI+ +LGH  L TT  YT+ +
Sbjct: 242 HKALDVVPGLP-RRGAHTLRHSFATEMLNAGAPITSIKELLGHSNLETTTRYTHTS 296


>gi|34222780|sp|Q48733|XERC_LACLE RecName: Full=Tyrosine recombinase xerC
 gi|1359910|emb|CAA59018.1| xerC recombinase [Lactobacillus leichmannii]
          Length = 295

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 141/286 (49%), Gaps = 12/286 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L+ ER  S  T+ +Y+ D    L     + +E        Q+S  ++  ++   
Sbjct: 5   EQFLSYLKNERSYSPKTVLAYQKD----LAAAKKFWQENGGFPGWDQISRRDLEIYLLAT 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             QK+   +L R LS +KSF + L +R +      + ++  +    LP    + +   ++
Sbjct: 61  -GQKLASSTLSRKLSSLKSFYRLLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQVI 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            ++     ++ K +  RN AI+ L Y  G+R+SE   L  + +  +   + + GKG+K R
Sbjct: 120 RSL-----NDGKPLTVRNRAIVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDR 174

Query: 199 IVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            V      +K + EY  +    L  N      +F    G+P++     + ++Q+ +  GL
Sbjct: 175 YVFFDQESKKYLEEYLQVARPSLLKNEPDTEAVFLNKLGRPISSRGIAKAVQQIFQKAGL 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                 H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V+
Sbjct: 235 TAGAHPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVS 280


>gi|160877191|ref|YP_001556507.1| tyrosine recombinase XerC [Shewanella baltica OS195]
 gi|160862713|gb|ABX51247.1| tyrosine recombinase XerC [Shewanella baltica OS195]
 gi|315269395|gb|ADT96248.1| tyrosine recombinase XerC [Shewanella baltica OS678]
          Length = 306

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 151/308 (49%), Gaps = 33/308 (10%)

Query: 21  WLQNLE----IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           WLQ  E     ER LS  T+++Y  +  +    L     + + +  + +  + ++   ++
Sbjct: 15  WLQTFERYLSTERQLSAHTVRNYLYELNRGSDLLP----DGVHLLNVSREHWQQV---LA 67

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           K   + +  RSL   LS +K + ++L +  +   +    +   K++  LP+ ++      
Sbjct: 68  KLHRKGLSPRSLSLCLSAVKQWGEFLLRESVIELNPAKGLSAPKQAKPLPKNIDVDAISH 127

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+D         T  +  R+ A++ L Y  GLR++E  +L   ++  D   +R+ GKG+K
Sbjct: 128 LLD------IEGTDPLSLRDKAMMELFYSSGLRLAELAALNLSSVQYDLKEVRVLGKGNK 181

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLR 251
            RIVP+      A+L +       LN   Q+P     LF   +GK L+    Q  + +  
Sbjct: 182 ERIVPVGRLAIAALLNW-------LNCRKQIPCEDNALFVTEKGKRLSHRSIQARMAKWG 234

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +   L +    H LRHSFATH+L    DLR++Q +LGH  L+TTQIYT+++ ++    + 
Sbjct: 235 QEQALSVRVHPHKLRHSFATHMLEASADLRAVQELLGHANLATTQIYTSLDFQH----LA 290

Query: 312 EIYDQTHP 319
           ++YD  HP
Sbjct: 291 KVYDNAHP 298


>gi|312891380|ref|ZP_07750897.1| tyrosine recombinase XerD [Mucilaginibacter paludis DSM 18603]
 gi|311296074|gb|EFQ73226.1| tyrosine recombinase XerD [Mucilaginibacter paludis DSM 18603]
          Length = 299

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 152/306 (49%), Gaps = 15/306 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K ++ +   L +E+ LS  ++ +Y  D  + + F     + K+       +   ++R FI
Sbjct: 5   KAKKGFSSYLRLEKSLSANSVGAYLGDLDKLIQF----ADSKLIKLYPDTIGMNDLREFI 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                  +   S  R +SGIK+F KYL    +       +   L ++  L R L +  ++
Sbjct: 61  MWVNELGMIPSSQARIISGIKAFYKYL----LMDNQLSYDPSELLEAPKLMRKLPDTLSI 116

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
             +D  L+     +K    RN  ++ +LYGCGLR++E ++L   N+  D   +++ GKG+
Sbjct: 117 VDIDK-LIDAIDLSKPEGMRNKTMIEVLYGCGLRVTELVNLRISNLYLDIEFIKVLGKGN 175

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R+VP+     K +  +         + +  +  +F   RG  L+       I++L   
Sbjct: 176 KERLVPIGAQAIKFLKIWLQEVRVHTPVKMGEEDIVFLNRRGNRLSRVYVFMMIKELAEK 235

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +GL  S + HT RHSFATHL+  G DLR++Q +LGH  ++TT+IYT+++     +++  +
Sbjct: 236 IGLKKSISPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLDR----EYLKGV 291

Query: 314 YDQTHP 319
             + HP
Sbjct: 292 IIEHHP 297


>gi|262038210|ref|ZP_06011604.1| tyrosine recombinase XerD [Leptotrichia goodfellowii F0264]
 gi|261747791|gb|EEY35236.1| tyrosine recombinase XerD [Leptotrichia goodfellowii F0264]
          Length = 315

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 143/294 (48%), Gaps = 34/294 (11%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
            +KE  ++L     E+G SK T+  YE D + F  ++              Q S T+I+ 
Sbjct: 33  FIKEFSDYLS---FEKGSSKNTVAGYERDLKIFFDYI--------------QKSATDIKE 75

Query: 74  FISKRR----TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
                     ++++   S+ R ++ I++F K+    K+  E     +++LK+   LP  L
Sbjct: 76  EDIYEYIEEISRELKRNSVLRKIASIRTFYKFCYLNKMVKEDPTGMIKSLKREKRLPEVL 135

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTL 188
           N K+  T++DN+  HT         R+  I+  L   G R+SE L+L  +++ +     +
Sbjct: 136 NLKEVKTIIDNIG-HTPE-----GMRDRLIIKFLIATGARVSEILNLNIKDVENQGYEFI 189

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           ++ GKG K RIVP+  S+   I +Y  +  P          LF   R +      F + +
Sbjct: 190 KVLGKGSKYRIVPIYESLENEIKDYISNYRPKLKGSESSFKLFPDTRREN-----FWKRL 244

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           ++  +  G+  +   H  RHS AT LLSNG D+R +Q ILGH  +STT+IYT+V
Sbjct: 245 KKTAKDAGIEKNVYPHIFRHSVATVLLSNGADIRIVQEILGHANISTTEIYTHV 298


>gi|271964493|ref|YP_003338689.1| tyrosine recombinase XerD [Streptosporangium roseum DSM 43021]
 gi|270507668|gb|ACZ85946.1| tyrosine recombinase XerD [Streptosporangium roseum DSM 43021]
          Length = 308

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 153/310 (49%), Gaps = 25/310 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L +L +ERGL+  TL SY  D  +++  L   +  ++T   I +    ++ AF++  R
Sbjct: 10  SYLAHLALERGLAANTLASYRRDLLRYVEHL--KSRGRVTFGEIAE---GDVTAFLAALR 64

Query: 80  T-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
                 Q +   S  R++S ++   ++  +  ++       +R  ++   LP+A++    
Sbjct: 65  AGDEEHQALVASSAARAVSAVRGLHRFALREGVSDHDPAHGVRPPRQLRRLPKAISVND- 123

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQG 192
              V+ ++  +  E   +  RN A+L LLYG G RISEA+ L   ++    D   +R++G
Sbjct: 124 ---VERLIAASGPEGAPLTMRNRALLELLYGTGARISEAVGLAVDDVDLGSDTQQVRLRG 180

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLN-PGVFQRYIRQ 249
           KG + R+VPL    R+A+  Y       +  + +    LF   RG  L   G ++  + Q
Sbjct: 181 KGGRTRLVPLGRFAREALGAYLARARPGIAAHGRGTSGLFLNARGGRLTRQGAWE--VLQ 238

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G     + H LRHSFATHLL  G D+R +Q +LGH  ++TTQ+YT V      D 
Sbjct: 239 AAAERGGLAGISPHILRHSFATHLLDGGVDVRVVQELLGHASVTTTQVYTLVTV----DK 294

Query: 310 MMEIYDQTHP 319
           + E Y   HP
Sbjct: 295 LREAYAAAHP 304


>gi|254488719|ref|ZP_05101924.1| tyrosine recombinase XerD [Roseobacter sp. GAI101]
 gi|214045588|gb|EEB86226.1| tyrosine recombinase XerD [Roseobacter sp. GAI101]
          Length = 324

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 140/298 (46%), Gaps = 32/298 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT-----EIRAF 74
            +L+    E G S  T  +Y  D + F  FLA            R L +      ++  +
Sbjct: 11  TFLEAQAAELGASTNTQLAYGRDLKDFDSFLAG-----------RHLDFARATRDDVERY 59

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +     Q +   +  R LS IK   ++  +    +++  + +    +   LP+ L+E + 
Sbjct: 60  LVWCDAQGLAKSTRARRLSAIKQIYRFAFEESWRSDNPAIQISGPGQDKRLPKILSEHE- 118

Query: 135 LTLVDNVLLHTSHETKWIDA--RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
              VD +L       + +    RN+ ++ LLY  G+R+SE +SL       D   L I G
Sbjct: 119 ---VDRLLEAARGSGRNLHEKLRNTCLMELLYATGMRVSELVSLPVSATRGDPRLLLIMG 175

Query: 193 KGDKIRIVPLLPSVRKAILEYY------DLCPFDLNLNIQLPLF--RGIRGKPLNPGVFQ 244
           KG+K R+VPL P  R A+ ++       D             LF  RG+ G  L    F 
Sbjct: 176 KGNKERLVPLSPPARVALTDWLIARDQIDAAAQAKKQPASRFLFPSRGVAGY-LTRHRFY 234

Query: 245 RYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             I++     G+ P   T HTLRH+FATHLL+NG DLR+IQ++LGH  ++TT+IYT+V
Sbjct: 235 LMIKEFAVAGGVDPSKVTPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEIYTHV 292


>gi|167580058|ref|ZP_02372932.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis
           TXDOH]
          Length = 323

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 133/277 (48%), Gaps = 15/277 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +E GLS+ TL +Y  D + F  +LA      +++    +     +  +I+ R   K    
Sbjct: 44  LEHGLSRNTLDAYRRDLQLFAQWLA--ARHAVSLDRTEK---PMLEGYIAARSDGKAT-- 96

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R LS  + +  +  +         L + + K++   P  L+E Q   L+    + T 
Sbjct: 97  SSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTP 156

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+VP    V
Sbjct: 157 -----LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPF-GEV 210

Query: 207 RKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
               +E Y  D  P  L       LF   RG  +    F   I++  +   +    + HT
Sbjct: 211 AHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHT 270

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 271 LRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 307


>gi|171463113|ref|YP_001797226.1| tyrosine recombinase XerD [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171192651|gb|ACB43612.1| tyrosine recombinase XerD [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 307

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 148/297 (49%), Gaps = 21/297 (7%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +E GL++ +L +Y  D    L+ LA +   K +   +  ++  ++ A+I+ RR  K    
Sbjct: 25  LEDGLAQNSLAAYRRD----LLLLAQWLY-KDSGGDLYGVTEKDLTAYIAYRRADKA--T 77

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           +  R L+  K F ++  +  +      + +R  K++   P+ L+E Q   L++   + TS
Sbjct: 78  TANRRLTVFKRFYRHALRMNLVKSDPCMGLRAAKQALRFPKTLSEDQVTALLNAPDIETS 137

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205
                +  R+  +L L+Y  GLR+SE +SL    +  ++  +R+  GKG K R+VP    
Sbjct: 138 -----LGLRDRTMLELMYASGLRVSEIVSLKTAALGLNEGVVRVVNGKGGKERLVPFGGE 192

Query: 206 VRKAILEYYDLC--PFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
             + +  Y      P  L       +F G   G  L    F   I++      + ++ + 
Sbjct: 193 AGQWLRRYLAEARTPL-LEGKTSDAVFVGRHTGTGLTRQAFWALIKRYATVANISVALSP 251

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  I+ Q HP
Sbjct: 252 HTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER----LKSIHQQHHP 304


>gi|83720485|ref|YP_441282.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis
           E264]
 gi|257140051|ref|ZP_05588313.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis
           E264]
 gi|83654310|gb|ABC38373.1| tyrosine recombinase XerD [Burkholderia thailandensis E264]
          Length = 333

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 136/278 (48%), Gaps = 17/278 (6%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI-QTIRQLSYTEIRAFISKRRTQKIGD 85
           +E GLS+ TL +Y  D + F  +LA      +++ +T R +    +  +I+ R   K   
Sbjct: 54  LEHGLSRNTLDAYRRDLQLFAQWLA--ARHAVSLDRTERPM----LEGYIAARSDGKAT- 106

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            S  R LS  + +  +  +         L + + K++   P  L+E Q   L+    + T
Sbjct: 107 -SSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDT 165

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
                 +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+VP    
Sbjct: 166 P-----LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPF-GE 219

Query: 206 VRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           V    +E Y  D  P  L       LF   RG  +    F   I++  +   +    + H
Sbjct: 220 VAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPH 279

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           TLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 280 TLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 317


>gi|260771883|ref|ZP_05880801.1| site-specific recombinase XerD [Vibrio metschnikovii CIP 69.14]
 gi|260613175|gb|EEX38376.1| site-specific recombinase XerD [Vibrio metschnikovii CIP 69.14]
          Length = 302

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 157/305 (51%), Gaps = 21/305 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + +ERGL++ TL SY  D  + L+++    +    +  I      E +++++  
Sbjct: 13  EQFLDAMWMERGLAENTLMSYRNDLTKLLLWM---EQHDYRLDFISLAGLLEYQSWLTD- 68

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R LS ++   +YL + K+ ++     + + K    LP+ L+E+Q     
Sbjct: 69  --QDYKQTSRARMLSALRRLFQYLHREKVRSDDPSALLVSPKLPQRLPKDLSEEQV---- 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL+       ++ R+ A+L LLY  GLR++E +SLT +NI   Q  +R+ GKG K R
Sbjct: 123 -EALLNAPDPNDPLELRDKAMLELLYATGLRVTELISLTMENISLRQGVVRVVGKGGKER 181

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           +VP+  +  + I  +  +    L+L   N    +F   R + +    F   I+      G
Sbjct: 182 LVPMGENAIEWIETF--IAQGRLHLLGDNTSDVVFPSKRAQQMTRQTFWHRIKYYAVIAG 239

Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           + +   + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +I+
Sbjct: 240 IDVEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIH 295

Query: 315 DQTHP 319
            + HP
Sbjct: 296 SEHHP 300


>gi|153835738|ref|ZP_01988405.1| tyrosine recombinase XerC [Vibrio harveyi HY01]
 gi|148867607|gb|EDL66909.1| tyrosine recombinase XerC [Vibrio harveyi HY01]
          Length = 313

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 152/301 (50%), Gaps = 16/301 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  E+GLS  T ++Y    +Q L  +A +  E + ++   Q+    +R    K   + + 
Sbjct: 24  LRSEKGLSLHTQRNY----KQQLETMAHHLAE-MGLKDWSQVDAGWVRQLAGKGMREGMK 78

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             SL   LS ++SF  +L  R   + +    +   +K   LP+ L+  +      N LL 
Sbjct: 79  ASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEV-----NQLLE 133

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            + E   +  R+ A++ L+YG GLR++E +S+  +++      LR+ GKGDK R VP   
Sbjct: 134 VN-EDDPLAVRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVIGKGDKERKVPFSG 192

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
              + + ++  +   DL    +  LF    G  ++    Q+ + +  +   +    + H 
Sbjct: 193 MATEWVGKWLRVR-GDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISPHK 251

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ ++    + + YDQ HP   ++
Sbjct: 252 LRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQH----LAQAYDQAHPRARKR 307

Query: 325 D 325
           +
Sbjct: 308 N 308


>gi|116491033|ref|YP_810577.1| tyrosine recombinase XerD subunit [Oenococcus oeni PSU-1]
 gi|290890513|ref|ZP_06553588.1| hypothetical protein AWRIB429_0978 [Oenococcus oeni AWRIB429]
 gi|116091758|gb|ABJ56912.1| tyrosine recombinase XerD subunit [Oenococcus oeni PSU-1]
 gi|290479909|gb|EFD88558.1| hypothetical protein AWRIB429_0978 [Oenococcus oeni AWRIB429]
          Length = 302

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 156/304 (51%), Gaps = 22/304 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++ + L  E+GL + +++SY+ D  +F    A+  +E I +  + + +   I  +++  +
Sbjct: 14  DYTRYLRTEQGLLENSIKSYKQDLSEFG---AYIQKENILLVKVDRFT---ILDWLNYLQ 67

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN--EKQALTL 137
                + S+   +S ++ F  YL   +      +L +   KK++ LP+ L   E +A+  
Sbjct: 68  NSGKSNNSIVHMVSSLRKFFAYLSDDQQIQIDPMLKVTTPKKNSHLPQVLTATEIEAVLA 127

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           V ++       +  +  RN A+L  +Y  G R+SE  +L   ++ D+   +   GKG K 
Sbjct: 128 VPDI-------STTLGLRNRALLETMYATGFRVSEICNLKLADLHDELGLITTIGKGQKQ 180

Query: 198 RIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYLG 255
           RIVP+       I +Y+    P  L       LF    G  ++  G+F + ++++    G
Sbjct: 181 RIVPIGEMSLLYISKYFKESRPILLKDKESPYLFLNDHGHRISRQGIF-KLVKEIAIKAG 239

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + HTLRHSFAT+LL NG DLR +Q +LGH  +STTQIYT+V+ K+    + E Y+
Sbjct: 240 IDKDISPHTLRHSFATNLLENGADLRIVQELLGHSDISTTQIYTHVSQKH----IREQYN 295

Query: 316 QTHP 319
           + HP
Sbjct: 296 RFHP 299


>gi|325962900|ref|YP_004240806.1| tyrosine recombinase XerD [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468987|gb|ADX72672.1| tyrosine recombinase XerD [Arthrobacter phenanthrenivorans Sphe3]
          Length = 334

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 147/329 (44%), Gaps = 60/329 (18%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE-IRAFI-SK 77
           ++LQ++ +ERGL+  TL +Y  D  ++  +LA   +   + Q I +   T  +RA     
Sbjct: 33  DYLQHMGVERGLAANTLSAYRRDLARYSRYLA--AQGCSSPQDITRHHVTGYVRALSDGS 90

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +G RS  R++  ++   K+      T       +        LP+A++       
Sbjct: 91  DGGSALGVRSAARTVVAVRGLHKFWALEGYTPADPASEVHPPMPGKRLPKAIS------- 143

Query: 138 VDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-----STLRI 190
           VD V  +L  +        R+ A+L  LY  G RISEA+ L   +I  D      + +R+
Sbjct: 144 VDEVTRILEAAGTDTATGLRDRALLEFLYSTGARISEAVGLDVDDISLDTGESGPAIVRL 203

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-------NPGVF 243
            GKG K R+VPL     +A+  Y                   +RG+PL        P +F
Sbjct: 204 FGKGSKERLVPLGSYGARALDAYL------------------VRGRPLLAAKGKGTPALF 245

Query: 244 -----QRYIRQ-----LRRYLG---LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
                 R  RQ     L+   G   +    + HTLRHSFATHLL  G D+R +Q +LGH 
Sbjct: 246 LNARGGRISRQSAWTILKAAAGKAQITKDVSPHTLRHSFATHLLEGGADVRVVQELLGHA 305

Query: 291 RLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            ++TTQ+YT V +    D + EIY   HP
Sbjct: 306 SVTTTQVYTLVTA----DTLREIYAAAHP 330


>gi|239917444|ref|YP_002957002.1| tyrosine recombinase XerC subunit [Micrococcus luteus NCTC 2665]
 gi|281414065|ref|ZP_06245807.1| tyrosine recombinase XerC subunit [Micrococcus luteus NCTC 2665]
 gi|239838651|gb|ACS30448.1| tyrosine recombinase XerC subunit [Micrococcus luteus NCTC 2665]
          Length = 346

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 147/326 (45%), Gaps = 31/326 (9%)

Query: 21  WLQNLEI----ERGLSKLTLQSYECDTRQFLIFL---------------AFYTEEKITIQ 61
           WL+  E     ER  S  T+++Y  D R  +  +               A          
Sbjct: 23  WLEAFEEHLRHERNRSPQTVRAYLADLRALIDHVVGTAGTSGTPAADDDAPVRHAPSAPD 82

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            + +L   ++R +++      +   +L R ++ +++F  +L++  + ++   L +R+ + 
Sbjct: 83  VLAELDIEDLRGWLAAMSGAGLARATLARRVAAVRTFTAWLRREGLRSDDPALRLRSPRP 142

Query: 122 SNSLPRALNEKQAL-------TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
             +LP  L E+QA         LVD            +  R++A+L LLY  G R++E  
Sbjct: 143 EGTLPHVLQEQQARRLLAAAQELVDAAAAGDDPVAHALALRDAALLELLYATGARVAELS 202

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGI 233
           +L   ++   +  +R+ GKGD+ R VP      +A+  +  L    L      P LF G 
Sbjct: 203 ALDVDDLEAGRGVVRLTGKGDRQRTVPYGDPAGRALQAWQRLGRPRLARPDSGPALFLGA 262

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           RG  L     +  + +    LG   +   H LRH+ ATHLL  G DLRS+Q +LGH  L 
Sbjct: 263 RGGRLGVRQARTVVDRALEGLGDTAARGPHALRHTAATHLLDGGADLRSVQELLGHASLR 322

Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHP 319
           TTQ+YT+V+     D + E Y Q HP
Sbjct: 323 TTQVYTHVSI----DRLREGYRQAHP 344


>gi|157825624|ref|YP_001493344.1| site-specific tyrosine recombinase XerD [Rickettsia akari str.
           Hartford]
 gi|157799582|gb|ABV74836.1| site-specific tyrosine recombinase XerD [Rickettsia akari str.
           Hartford]
          Length = 306

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 150/298 (50%), Gaps = 28/298 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L  ER LSK ++ SY+ D   F  +LA      + I T        +R +I     
Sbjct: 7   FLEMLLAERALSKNSILSYKRDLCDFQNYLAKQRLSALNITT------ANVRDWIEYLAN 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS+ R +S +K++ ++L     TT + +LN+   K  N LP  L+  Q  +L++ 
Sbjct: 61  NDLQARSINRKISTVKNYYEFLISENHTTFNPVLNVDLPKYQNKLPEILSIDQIKSLLE- 119

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-------LRIQGK 193
              + S +      R +A+++LLY  GLR+SE +SL   +I+ ++++         + GK
Sbjct: 120 ---YCSQDNSPEGIRLNAMIHLLYASGLRVSELVSLKLSDILTNKTSKGEVRKIFSVLGK 176

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LF--RGIRGKPLNPGVFQRY 246
           G+K R++ +      +I +Y  L   D+ +N   P     LF    + G  +    F   
Sbjct: 177 GNKERVIVINEQAVISIAKY--LAIRDIFVNKAKPKNLIYLFPSSALTGY-MTRQNFAIL 233

Query: 247 IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           ++    Y  L P   + H LRHSFA+HLL  G DLR IQ +LGH  +STTQIYT++ +
Sbjct: 234 LKSAALYANLNPEHVSPHILRHSFASHLLEGGADLRVIQDLLGHSDISTTQIYTHLQT 291


>gi|260771629|ref|ZP_05880549.1| tyrosine recombinase XerC [Vibrio metschnikovii CIP 69.14]
 gi|260613406|gb|EEX38605.1| tyrosine recombinase XerC [Vibrio metschnikovii CIP 69.14]
          Length = 309

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 152/306 (49%), Gaps = 22/306 (7%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  E+GLS  T ++Y+    Q L  +A +    + +   + +    +R   SK     + 
Sbjct: 23  LRSEKGLSLHTQRNYQ----QQLQAMAGHLHH-LGVSEWQHVDAAWVRQLASKGMRDGMK 77

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN---EKQALTLVDNV 141
             SL   LS ++SF  +L  R   + +    +   +K   LP+ L+     Q L + DN 
Sbjct: 78  ASSLATRLSSLRSFFDFLILRGELSANPAKGVSAPRKQRPLPKNLDVDEMAQLLEVTDND 137

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
            L           R+ A++ L+YG GLR++E +++  +++   +  +R+ GKGDK R VP
Sbjct: 138 PL---------SIRDRAMMELMYGAGLRLAELVAINLKDLSFSRGEIRVIGKGDKERKVP 188

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
                ++ + ++  +    L    ++ LF    G  ++    Q+ + +      +    +
Sbjct: 189 FSGQAKEWVGKWLKVRDSLLK-GEEVALFISKLGGRISHRSVQKRMAEWGHKQSVASHIS 247

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ ++    + E+YDQ HP  
Sbjct: 248 PHKLRHSFATHVLESSNNLRAVQELLGHENISTTQIYTHLDFQH----LAEVYDQAHPRA 303

Query: 322 TQKDKK 327
            +K K+
Sbjct: 304 KKKTKE 309


>gi|94495775|ref|ZP_01302355.1| integrase [Sphingomonas sp. SKA58]
 gi|94425163|gb|EAT10184.1| integrase [Sphingomonas sp. SKA58]
          Length = 310

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 86/306 (28%), Positives = 147/306 (48%), Gaps = 28/306 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECD-TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +L+ +  ERG S+ TL +Y  D T    +        K  + T+                
Sbjct: 12  FLEMMAAERGASRNTLLAYRTDLTGAGGLLGGLAGASKEGLGTL-------------ATH 58

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +   S+ R  S +++F  +L++  +  ++  + +        LP+ L+  +   L  
Sbjct: 59  WASLAGSSVARKASALRAFYGFLEEEGLRADNPSVALPRPVTRRPLPKILSTTEVDRLFA 118

Query: 140 NVL--LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            +   L  +H    +D R SA++ LLYG GLR +E +SL  + +  D+  L ++GKG + 
Sbjct: 119 LIAERLEVAHPAP-LDLRLSALIELLYGSGLRATELVSLPRRALAADRPFLILKGKGARE 177

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL- 256
           R+VP+    R A+  +    P D        LF   +       ++Q  ++ L    G+ 
Sbjct: 178 RLVPISDRARAAVSAWLVHVPGDSAW-----LFPSGKSHLSRIRLYQ-LVKALAGAAGIA 231

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           P   + H LRH+FATHLL  G DLR++Q++LGH  + TTQIYT+V+S+     ++E+ +Q
Sbjct: 232 PERVSPHVLRHAFATHLLEGGADLRALQAMLGHADIGTTQIYTHVDSRR----LVELVNQ 287

Query: 317 THPSIT 322
            HP  T
Sbjct: 288 RHPLAT 293


>gi|220917358|ref|YP_002492662.1| tyrosine recombinase XerD [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955212|gb|ACL65596.1| tyrosine recombinase XerD [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 298

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 155/300 (51%), Gaps = 15/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L ++ +E+GL++ ++++Y  D R++L  L     +++ +    ++   EI+A +++   
Sbjct: 11  FLAHVRVEKGLAENSVEAYGRDLRRYLEHL-----DELGVDAWERVGRGEIQAHLAELVR 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  RS  R+LS I+S  + L   ++T       + + +    LP  L+  +    VD 
Sbjct: 66  RGLSPRSQARALSAIRSLHRLLAAERVTPADPSDEIESPRPGRRLPGLLSHDE----VDR 121

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL           R+ A+L LLY  GLR+SE +SL   ++  +   L  +GKG+K RIV
Sbjct: 122 -LLAAPDVRSAAGIRDRAMLELLYATGLRVSELVSLQLNDVNLETRVLVARGKGNKERIV 180

Query: 201 PLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+      A+  Y  +    L +      LF   RG  +    F + + +  R  G+   
Sbjct: 181 PVGAPAAAAVKAYLAVARERLLHGRRSKDLFVTPRGGRMTRQGFAKILDRCARRAGIRRR 240

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + H LRHSFATHLL  G DLR++Q +LGH  +STTQIYT+V+  +    +  +YD+ HP
Sbjct: 241 ISPHKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHVDRTH----VKRLYDRFHP 296


>gi|241667911|ref|ZP_04755489.1| phage integrase family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876451|ref|ZP_05249161.1| phage integrase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842472|gb|EET20886.1| phage integrase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 293

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 147/312 (47%), Gaps = 35/312 (11%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N+L NL   +  S+ T+ +Y  D  Q            I  + I +L   +I  ++ K  
Sbjct: 9   NFLDNLLYLKNYSQETINNYRRDLLQL--------NSSIVDKDITKLENNDILMWVKKLH 60

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q    ++L+R LS ++SF  +L   ++   +    ++  K S  LP+A+N  +   L+D
Sbjct: 61  AQGNSSKTLQRKLSSLRSFFNFLINSELIKNNPTTGIKAPKSSKKLPKAVNTDELAYLLD 120

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                    +  I+ R+ A   LLY CG+R+SE  S+  ++I  +Q ++R+ GKG+K R+
Sbjct: 121 ------IKPSNNIETRDIACFDLLYSCGIRLSELSSIELKDININQKSIRVIGKGNKERV 174

Query: 200 VPLLPSVRKAILEYYDL-------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           V         +  + ++       C +         LF    G+ L     Q+ I    +
Sbjct: 175 VYFGSKTLINLNRWLNIRDTYSPKCNY---------LFISQNGEHLTNRSIQKRIEIFAK 225

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                     H LRHSFATH+L +  DL +++ +LGH  +S+TQIYT++N +     +  
Sbjct: 226 KYATK-HIHPHMLRHSFATHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQ----LAS 280

Query: 313 IYDQTHPSITQK 324
           ++D+ HP   +K
Sbjct: 281 VFDKAHPRAKKK 292


>gi|332283336|ref|YP_004415247.1| site-specific tyrosine recombinase XerD [Pusillimonas sp. T7-7]
 gi|330427289|gb|AEC18623.1| site-specific tyrosine recombinase XerD [Pusillimonas sp. T7-7]
          Length = 282

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 137/282 (48%), Gaps = 23/282 (8%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA-FISKRRTQKIGD 85
           +E GL++ TL +Y  D   F ++L          +T+ Q    +I+  F +K  + K   
Sbjct: 1   MEDGLAQNTLSAYRRDLSAFALWL-----HAKPGKTLEQADAADIQDWFAAKHASTKA-- 53

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            +  R L+ +K +  +  ++ +  +   L +R  K++   P+ ++E Q      + LL  
Sbjct: 54  TTANRRLAALKRYYLWAMRQGLVAKDPCLTLRAAKQAARFPKTMSEDQV-----DALLQA 108

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLP 204
             +   +  R+ A+L  LY  GLR+SE ++L   ++   +  +R+ QGKG K R+VPL  
Sbjct: 109 PDDNSPLGLRDRAMLETLYATGLRVSELINLELLDVSLTEGVVRVTQGKGGKDRLVPLGD 168

Query: 205 SVRKAILEYYDLC-----PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
                 L + DL      P  L       LF   R   +    F   +++      +   
Sbjct: 169 EA----LHWIDLYAKQSRPGLLGQRRCNALFVTARAAAMTRQSFWLIVKKYAALADIHTP 224

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            + H LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 225 LSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHV 266


>gi|46446092|ref|YP_007457.1| site-specific tyrosine recombinase XerC [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399733|emb|CAF23182.1| putative XerC Protein [Candidatus Protochlamydia amoebophila UWE25]
          Length = 329

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 126/257 (49%), Gaps = 19/257 (7%)

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           IR F++     +   R++ R LS ++SF +YL+ + +   +    + + K +  LP +L+
Sbjct: 82  IRGFLAWLSANQQNKRTIARRLSSLRSFFRYLQTQNLIQINPTEELESPKLNKKLPVSLS 141

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            +Q      ++L      T ++  R+  I+ L Y  GLR+SE +SL  Q+      T+++
Sbjct: 142 YEQV-----SLLFEQPDTTSYLGFRDRTIMELFYSSGLRVSELVSLDRQDFDYSNLTIKL 196

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--------PLFRGIRGKPLNPGV 242
           +GKG K R++P+  +  K I  Y  L   +   N++          +F    G  L    
Sbjct: 197 KGKGKKQRLIPITKNAAKWIQSY--LLHIERYQNLETHSAESDSNAIFLNKWGTRLTTRS 254

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             R         GL    T HT+RH+ ATH L NG DL++IQ +LGH  LSTT IYT V+
Sbjct: 255 VDRKFDLYLTKSGLAGKVTPHTIRHTIATHWLENGMDLKTIQLLLGHRSLSTTTIYTQVS 314

Query: 303 SKNGGDWMMEIYDQTHP 319
           +K       ++Y   HP
Sbjct: 315 TK----LKQKVYADAHP 327


>gi|229593315|ref|YP_002875434.1| site-specific tyrosine recombinase XerC [Pseudomonas fluorescens
           SBW25]
 gi|259710435|sp|C3K438|XERC_PSEFS RecName: Full=Tyrosine recombinase xerC
 gi|229365181|emb|CAY53449.1| tyrosine recombinase [Pseudomonas fluorescens SBW25]
          Length = 299

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 149/310 (48%), Gaps = 29/310 (9%)

Query: 17  ERQ--NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ERQ   +  +L  ER +S  TL++Y  D  + L +      EK  I + + L    +R+ 
Sbjct: 2   ERQLDAYCAHLRNERQVSPHTLEAYRRDLNKVLAYC-----EKQQISSWKALDIQSLRSL 56

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I++        RSL R LS ++    YL +  +        +   K    LP+ L+  +A
Sbjct: 57  IARLHQAGQSSRSLSRLLSAVRGLYHYLNREGLCDHDPANGLSPPKGERRLPKTLDTDRA 116

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           L L+D  +     E  ++  R+ AIL L Y  GLR+SE   L    +      +++ GKG
Sbjct: 117 LQLLDGAV-----EDDFLAHRDQAILELFYSSGLRLSELTGLNLDQLDLADGLVQVLGKG 171

Query: 195 DKIRIVPLLPSVRKAILEYYDLC----PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            K R++P+    R+A+  +  L     P D        +F   +G+ L P   Q  ++  
Sbjct: 172 SKTRVLPVGRKAREALQLWLPLRLLTNPADD------AVFVSQQGRRLGPRAIQVRVKAA 225

Query: 251 -RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             R LG  L    H LRHSFA+H+L +  DLR++Q +LGH  + TTQIYT+++ ++    
Sbjct: 226 GERELGQNLHP--HMLRHSFASHMLESSQDLRAVQELLGHSDIKTTQIYTHLDFQH---- 279

Query: 310 MMEIYDQTHP 319
           +  +YD  HP
Sbjct: 280 LATVYDSAHP 289


>gi|297621664|ref|YP_003709801.1| Site-specific tyrosine recombinase XerC [Waddlia chondrophila WSU
           86-1044]
 gi|297376965|gb|ADI38795.1| Site-specific tyrosine recombinase XerC [Waddlia chondrophila WSU
           86-1044]
          Length = 301

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 150/304 (49%), Gaps = 20/304 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLA--FYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++  L + +  S+ T+++Y  D   F   L   + ++E   +  I +    +IR F++  
Sbjct: 11  FIHQLRVVKNASEHTIRNYAIDLNIFKQHLEQEWQSDEDFALNRIER---RQIRGFLAMM 67

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            ++    R++ R LS +++F K+    ++ T + I  + + K   ++P  L+  Q   L 
Sbjct: 68  NSKGASKRTILRRLSSLRTFFKWAFANQLITSNPIEEIESPKLEKTIPTPLSYTQVEHLF 127

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
               + T      + +R+  ++ L Y  GLR+SE + L   ++      ++++GKG K R
Sbjct: 128 SLPEIET-----LLGSRDRCMMELFYSSGLRVSELVGLNKNDVDITTRLMKVRGKGKKER 182

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL---G 255
           ++P+  +    I +Y        +      +F    G  L+    +   R  +RYL   G
Sbjct: 183 VIPVTHNAVYWIQKYLRHPERKFSCEENHAIFLNKLGTRLS---VRSVDRNFKRYLIKSG 239

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L  + T HT+RH+ ATH L NG DL++IQ++LGH  LS+T IYT+V++        +IY 
Sbjct: 240 LGGNVTPHTIRHTIATHWLENGMDLKTIQTLLGHESLSSTTIYTHVDA----TLKRKIYK 295

Query: 316 QTHP 319
           Q HP
Sbjct: 296 QAHP 299


>gi|59713090|ref|YP_205866.1| site-specific tyrosine recombinase XerC [Vibrio fischeri ES114]
 gi|197336470|ref|YP_002157268.1| tyrosine recombinase XerC [Vibrio fischeri MJ11]
 gi|59481191|gb|AAW86978.1| site-specific tyrosine recombinase [Vibrio fischeri ES114]
 gi|197317960|gb|ACH67407.1| tyrosine recombinase XerC [Vibrio fischeri MJ11]
          Length = 303

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 163/325 (50%), Gaps = 28/325 (8%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           + +++  +  K    + + L  E+GLS  T ++Y+   RQ         E  + +++ + 
Sbjct: 1   MSDVLPVQFSKHLDAFYEFLRNEKGLSIYTQRNYK---RQLTTIAEQLVE--LGVESWQD 55

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +    +R   SK   + +   SL   LS ++SF  +L  R + T +    +   +KS  L
Sbjct: 56  VDAGWVRQVTSKGMREGLKASSLSTRLSSLRSFFDFLVLRNVLTANPAKGVSAPRKSRPL 115

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P+ ++  +   L++       +E   +  R+ AI+ L+YG GLR++E +S+  ++I   Q
Sbjct: 116 PKNIDVDEMGQLLE------VNEDDPLSIRDRAIMELMYGAGLRLAELVSIDVRDIQLRQ 169

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVF 243
             LR+ GKGDK R VP     ++ +  +       L +  QL  P  +G+    L   + 
Sbjct: 170 GELRVIGKGDKERKVPFSGQAKEWLGHW-------LRVRNQLAKPEEKGLFVSKLGVRIS 222

Query: 244 QRYIRQLRRYLGLPLSTTAH----TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            R +++     GL     +H     LRHSFATH+L + G+LR++Q +LGH  +STTQIYT
Sbjct: 223 HRNVQKRMAEWGLKQGVNSHISPHKLRHSFATHMLESSGNLRAVQELLGHENISTTQIYT 282

Query: 300 NVNSKNGGDWMMEIYDQTHPSITQK 324
           +++ ++    + + YDQ HP   +K
Sbjct: 283 HLDFQH----LAQAYDQAHPRAKKK 303


>gi|269795657|ref|YP_003315112.1| tyrosine recombinase XerC subunit [Sanguibacter keddieii DSM 10542]
 gi|269097842|gb|ACZ22278.1| tyrosine recombinase XerC subunit [Sanguibacter keddieii DSM 10542]
          Length = 310

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 148/325 (45%), Gaps = 31/325 (9%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
            + P +    +L+E   +  +L  +RGLS+ T+++Y  D      F       ++    +
Sbjct: 6   GDAPSLDDVRVLEE---FSAHLTSQRGLSEHTVRAYASDLAGLSSF-----AHQVGAGPL 57

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
             +    +R ++++   + +   ++ R  + +++F  +  +         + + +   S 
Sbjct: 58  AAVGLDTLRGWLAQMAGRDLARSTVARRGAAVRAFYGWAVRSGRVGSDPSVRLGSPTVSK 117

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDA-----RNSAILYLLYGCGLRISEALSLTP 178
           +LP  L    A  L++         T  +D      R  A + LLY  G+R+ E +SL  
Sbjct: 118 TLPTVLAVDSATALMETA------RTAAVDGDPAALRAWACVELLYATGVRVGELVSLDL 171

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKP 237
           Q++  D  ++R+ GKGDK R+VP       A+  +  D  P     +    +F G RG+ 
Sbjct: 172 QDVDLDTRSVRVVGKGDKERVVPFGVPAATALRSWIEDGRPGLERGSGATAVFLGQRGQR 231

Query: 238 LNPGVFQRYIRQLRRYLGLPLST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
                 QR +R+    L    S      H LRHS ATHLL+ G DLR++Q +LGH  LST
Sbjct: 232 WG----QRQVRETVHRLSAAASVDDVAPHDLRHSAATHLLNGGSDLRTVQEVLGHSTLST 287

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHP 319
           TQ YT+V+++     +   Y   HP
Sbjct: 288 TQRYTHVSAER----LRSSYQLAHP 308


>gi|113968738|ref|YP_732531.1| tyrosine recombinase XerC [Shewanella sp. MR-4]
 gi|117918850|ref|YP_868042.1| tyrosine recombinase XerC [Shewanella sp. ANA-3]
 gi|123130813|sp|Q0HN93|XERC_SHESM RecName: Full=Tyrosine recombinase xerC
 gi|171460757|sp|A0KS67|XERC_SHESA RecName: Full=Tyrosine recombinase xerC
 gi|113883422|gb|ABI37474.1| tyrosine recombinase XerC [Shewanella sp. MR-4]
 gi|117611182|gb|ABK46636.1| tyrosine recombinase XerC [Shewanella sp. ANA-3]
          Length = 299

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 162/313 (51%), Gaps = 24/313 (7%)

Query: 19  QNWLQNLEI----ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           Q++LQ  E     ER LS  T+++Y  + ++    L     E + +  + +  + ++   
Sbjct: 6   QSYLQQFETYMQSERQLSAHTVRNYMYELQRGSELLP----EGVDLLNVGREHWQQV--- 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++K   + +  RSL   LS IK + ++L +  +   +    +   K++  LP+ ++    
Sbjct: 59  LAKLHRKGLSPRSLSLWLSAIKQWGEFLLRSGVIELNPAKGLSAPKQAKPLPKNID---- 114

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           +  + ++L    ++   +  R+ AI+ L Y  GLR++E  +L   ++  DQ  +R+ GKG
Sbjct: 115 VDSISHLLAIEGNDP--LTLRDKAIMELFYSSGLRLAELAALDLSSVQYDQHEVRVLGKG 172

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +K RIVP+     +AI  +   C   ++      LF   +GK L+    Q  + +  +  
Sbjct: 173 NKERIVPVGRYAIEAISAWLK-CRKQISCEDN-ALFVTEKGKRLSHRSIQARMSKWGQEQ 230

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            L +    H LRHSFATH+L +  DLR++Q +LGH  LSTTQIYT+++ ++    + ++Y
Sbjct: 231 ALSMRVHPHKLRHSFATHMLESSADLRAVQELLGHENLSTTQIYTSLDFQH----LAKVY 286

Query: 315 DQTHP-SITQKDK 326
           D  HP +  Q+DK
Sbjct: 287 DNAHPRAKKQQDK 299


>gi|313123911|ref|YP_004034170.1| tyrosine recombinase xerc [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280474|gb|ADQ61193.1| Tyrosine recombinase xerC [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 295

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 140/286 (48%), Gaps = 12/286 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L+ ER  S  T+ +Y+ D    L     + +E        Q+S  ++  ++   
Sbjct: 5   EQFLSYLKNERSYSPKTVLAYQKD----LAAAKKFWQENGGFPGWDQISRRDLEIYLLAT 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             QK+   +L R LS +KSF + L +R +      + ++  +    LP    + +   ++
Sbjct: 61  -GQKLASSTLSRKLSSLKSFYRLLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQVI 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            ++     ++ K +  RN AI+ L Y  G+R+SE   L  + +  +   + + GKG+K R
Sbjct: 120 RSL-----NDGKPLTVRNRAIVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDR 174

Query: 199 IVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            V      +K + EY       L  N      +F    G+P++     + ++Q+ +  GL
Sbjct: 175 YVFFDQESKKYLEEYLQAARPSLLKNEPDTEAVFLNKLGRPISSRGIAKAVQQIFQKAGL 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                 H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V+
Sbjct: 235 TAGAHPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVS 280


>gi|262172887|ref|ZP_06040565.1| tyrosine recombinase XerC [Vibrio mimicus MB-451]
 gi|261893963|gb|EEY39949.1| tyrosine recombinase XerC [Vibrio mimicus MB-451]
          Length = 310

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 154/304 (50%), Gaps = 20/304 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  E+GLS  T ++Y+        +LA     ++ + +  QL    +R  +   + Q + 
Sbjct: 24  LHSEKGLSLYTQRNYKQQLETMARYLA-----QMGLTSWPQLDAAWVRQLVVLGKRQGMK 78

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--L 142
             S+   LS ++SFL +L  R     +    +   +K   LP+ L+       VD +  L
Sbjct: 79  ASSISTRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRPLPKNLD-------VDEMAQL 131

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
           L  S +   +  R+ AI+ L+YG GLR++E +S+  +++      +R+ GKG+K R V  
Sbjct: 132 LEVSDDDP-LSIRDRAIMELMYGSGLRLAELVSIDVKDVNLRDGEIRVIGKGNKERKVWF 190

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
               ++ + ++  L     N + +  LF    G  ++    Q+ + +  +   +    + 
Sbjct: 191 AGQAQEWVGKWLKLRSQLANSD-ETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ ++    + ++YDQ HP   
Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQH----LAQVYDQAHPRAR 305

Query: 323 QKDK 326
           +K+K
Sbjct: 306 KKNK 309


>gi|304413311|ref|ZP_07394784.1| site-specific tyrosine recombinase [Candidatus Regiella insecticola
           LSR1]
 gi|304284154|gb|EFL92547.1| site-specific tyrosine recombinase [Candidatus Regiella insecticola
           LSR1]
          Length = 252

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 126/252 (50%), Gaps = 11/252 (4%)

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +++ F ++R        S  R LS IK F +YL + K+        + + K    LP+ L
Sbjct: 8   DLQRFFAERIDSHYKATSSARLLSAIKRFFQYLYREKLRINDPTALLSSPKLPQRLPKDL 67

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +EKQ        LL+  +    +  R+  +L +LY  GLR+SE + L   +I   Q  LR
Sbjct: 68  SEKQV-----EALLNAPNVDIPLQLRDKTMLEVLYATGLRVSELVGLIISDISLRQGVLR 122

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           + GKG+K R+VPL       I +Y +   P+ +N       F   R + +    F   I+
Sbjct: 123 VIGKGNKERLVPLGEEALYWIEQYIEHGRPWLVNGQALDAFFPSNRCQKMTRQTFWYRIK 182

Query: 249 QLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                  +     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++   
Sbjct: 183 HYAILANIDSERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSNLSTTQIYTHVATER-- 240

Query: 308 DWMMEIYDQTHP 319
             + +++ + HP
Sbjct: 241 --LKQLHQRHHP 250


>gi|300775996|ref|ZP_07085855.1| tyrosine recombinase XerC [Chryseobacterium gleum ATCC 35910]
 gi|300505129|gb|EFK36268.1| tyrosine recombinase XerC [Chryseobacterium gleum ATCC 35910]
          Length = 306

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 150/311 (48%), Gaps = 22/311 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ LE E+  S  T+ SY+ D   F  F    TE   +   + +     IR FI + 
Sbjct: 14  EKFLEYLEFEKRYSPHTVTSYKKDLEDFSHFF-LRTE---SSDNLAKADKKIIRNFIVEL 69

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKR---KITTESNILNMRNLKKSNSLPRALNEKQAL 135
               I  RS+ R LS ++SF  +L K    K++    I +++       +P +   K+ +
Sbjct: 70  SEHNISKRSINRKLSSLRSFYLFLLKIGEIKVSPTEGISSLK-FYAEKQIPMS---KEEM 125

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
             +++ +    H     D     I+ +LY  G+R +E   L  +N+      L+I GKG+
Sbjct: 126 ADLNDRVFEQVH-----DVLEKCIMEVLYQTGMRKAELCGLIFENVDLYGKELKIIGKGN 180

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R+VP+   + + +  Y ++   +     +   F   +GK LN       + +    + 
Sbjct: 181 KERVVPISSELAELLTSYLEIR--NPQTEYKSYFFVNKKGKKLNEKFVYVVVNKYLSLIT 238

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRHSFATH+L NG ++  ++ ILGH  L++TQ+YTN N     + + ++++
Sbjct: 239 TKEKKSPHILRHSFATHVLDNGAEISKVKKILGHSSLASTQVYTNANI----EQLKKVFN 294

Query: 316 QTHPSITQKDK 326
           Q HP  ++K++
Sbjct: 295 QAHPRASKKEE 305


>gi|258653281|ref|YP_003202437.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258556506|gb|ACV79448.1| integrase family protein [Nakamurella multipartita DSM 44233]
          Length = 336

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 88/325 (27%), Positives = 150/325 (46%), Gaps = 26/325 (8%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L+++ + +   L  ER  S  T+ +Y  D    L  L   T ++    T   L+   +R+
Sbjct: 17  LVRDLERYRTFLSAERNRSPATVTAYLADLVSLLDHLGRMTGDRPAELT--DLTLPVLRS 74

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++++RT      +L R  +  +SF  +  +     +     +   +   +LP  L   Q
Sbjct: 75  WLARQRTTGAARATLARRAAAARSFCAWAHRTGRLPQDVGARLAAPRADKTLPAVLRADQ 134

Query: 134 ALTLVDNVLLHTSHET-----------------KWIDARNSAILYLLYGCGLRISEALSL 176
           A  ++D   +    ++                 + +  R+ AIL LLY  G+R+SE   L
Sbjct: 135 AHQMLDAPAVSAPDQSPDTGTGTGTGTGTSAVEQAMARRDQAILELLYASGIRVSELTGL 194

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRG 235
               I   +  +R+ GKG+K R VP      +A+ ++ D   P   +      +F G RG
Sbjct: 195 NLDAIDRHRRVIRVLGKGNKQRTVPFGLPADRALGDWLDRGRPVLADDESGAAVFLGRRG 254

Query: 236 KPLNPGVFQRYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           + ++P   +  + R+     G P     H LRH+ ATHLL  G DLR++Q +LGH  L+T
Sbjct: 255 RRIDPRAVRTLVHRRTAAVDGAP-EIAPHGLRHTAATHLLEGGADLRTVQELLGHASLAT 313

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHP 319
           TQIYT+V+++     +  IY Q HP
Sbjct: 314 TQIYTHVSTER----LAAIYRQAHP 334


>gi|15617948|ref|NP_224232.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae
           CWL029]
 gi|15835561|ref|NP_300085.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae
           J138]
 gi|16753021|ref|NP_445294.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae
           AR39]
 gi|33241363|ref|NP_876304.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae
           TW-183]
 gi|34223089|sp|Q9Z9F7|XERC_CHLPN RecName: Full=Tyrosine recombinase xerC
 gi|4376276|gb|AAD18177.1| Integrase/recombinase [Chlamydophila pneumoniae CWL029]
 gi|8163493|gb|AAF73701.1| integrase/recombinase, phage integrase family [Chlamydophila
           pneumoniae AR39]
 gi|8978399|dbj|BAA98236.1| integrase/recombinase [Chlamydophila pneumoniae J138]
 gi|33235871|gb|AAP97961.1| site-specific integrase/recombinase [Chlamydophila pneumoniae
           TW-183]
          Length = 312

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 145/313 (46%), Gaps = 22/313 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLA------------FYTEE-KITIQTIRQL 66
           ++L  L++ +  S  TL++Y  D     IFL               TE+ K++       
Sbjct: 7   SFLDYLKMVKSASPHTLRNYCLDLNGLKIFLEERGNLAPSSPLQLATEKRKVSELPFSLF 66

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           +   +R +I+K        R++KR LS IKSF  Y   +KI  E+    +   +    LP
Sbjct: 67  TKEHVRMYIAKLIENGKAKRTIKRCLSSIKSFAHYCVIQKILLENPAETIHGPRLPKELP 126

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             +   Q       VL+ T   +K+   R+  ++ L Y  GLRISE +++  Q+      
Sbjct: 127 SPMTYAQV-----EVLMATPDISKYHGLRDRCLMELFYSSGLRISEIVAVNKQDFDLSTH 181

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            +RI+GKG K RI+P+  +  + I  Y +             +F    G+ ++     R 
Sbjct: 182 LIRIRGKGKKERIIPVTSNAIQWIQIYLNHPDRKRLEKDPQAIFLNRFGRRISTRSIDRS 241

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
            ++  R  GL    T HT+RH+ ATH L +G DL++IQ++LGH  L TT +YT V+ K  
Sbjct: 242 FQEYLRRSGLSGHITPHTIRHTIATHWLESGMDLKTIQALLGHSSLETTTVYTQVSVK-- 299

Query: 307 GDWMMEIYDQTHP 319
                + + + HP
Sbjct: 300 --LKKQTHQEAHP 310


>gi|226306026|ref|YP_002765986.1| tyrosine recombinase XerC [Rhodococcus erythropolis PR4]
 gi|226185143|dbj|BAH33247.1| tyrosine recombinase XerC [Rhodococcus erythropolis PR4]
          Length = 310

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 148/317 (46%), Gaps = 18/317 (5%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP  +S  L      + ++L + RG S+ T+++Y  D R  L   +  +E       + +
Sbjct: 7   LPASLSVHL----DAYAEHLRLSRGRSEHTIRAYVGDARALLTHFSAGSENA----DLDR 58

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           L  + +R++++ +        ++ R  S  + F  +L +    +      +       +L
Sbjct: 59  LDLSVMRSWLAAQNAVGTARTTVARRASSARGFTAWLAQTGRISVDPGTRLAAPPARRTL 118

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P  L + QAL  +D      + + + +  R+  I+ LLY  G+R+ E   L  +++  D+
Sbjct: 119 PTVLRQSQALDAMDAAE-SGAQQQEPLALRDRLIVELLYSTGIRVGELCGLDVESVDADR 177

Query: 186 STLRIQGKGDKIRIVPL-LP--SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
             LR+ GKG+K R VP  LP  S     LE+    P   +      L  G+RG  L+   
Sbjct: 178 RLLRVLGKGNKERSVPYGLPAESALNGWLEHGR--PALSSDRSGRALLLGVRGGRLDQRQ 235

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +  + +    +        H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V+
Sbjct: 236 ARSVVHETMAAIPGAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHASLATTQLYTHVS 295

Query: 303 SKNGGDWMMEIYDQTHP 319
            +     +  ++DQ HP
Sbjct: 296 VER----LRSVHDQAHP 308


>gi|227893507|ref|ZP_04011312.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047]
 gi|227864677|gb|EEJ72098.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047]
          Length = 302

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 143/288 (49%), Gaps = 14/288 (4%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E ++++  L+ ER  S  T+ SY  D    L+    + +E        +++  +++ ++ 
Sbjct: 7   ELEHFISYLQNERHYSSKTVLSYRTD----LLEAKKFWQENGGFNGWIKVNERDVQVYLQ 62

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT--TESNILNMRNLKKSNSLPRALNEKQA 134
               +K+   S +R +S + SF ++L +R+I     +  + +R  +K   LP    + + 
Sbjct: 63  HLADRKLARSSQQRQMSSLHSFYRFLTRRRIIKIDPTQAITLRRGEKK--LPEFFYQPEI 120

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             + D++        K +  RN A+  L Y  G+R+SE   LT + I     T+ + GKG
Sbjct: 121 KQVFDSL-----QGNKPLTVRNLALFELFYATGMRVSEVSGLTLKQIDLSLQTILVHGKG 175

Query: 195 DKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R V      +K+++ Y +   P  L    +  +F    GKP++    Q  +++    
Sbjct: 176 NKDRYVAFDDRTKKSLVNYLENARPKLLKDETEQHVFLSNLGKPISDRGIQYVMQKTFNQ 235

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            G+      H LRH+FAT +L+NG DLRS+Q +LGH  LS TQIYT+V
Sbjct: 236 AGISGKVHPHELRHTFATAMLNNGADLRSVQELLGHSDLSATQIYTHV 283


>gi|167835679|ref|ZP_02462562.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis
           MSMB43]
          Length = 320

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 135/277 (48%), Gaps = 15/277 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +E GLS+ TL +Y  D + F  +LA          ++ +     +  +I+ R   K    
Sbjct: 41  LEHGLSRNTLDAYRRDLQLFAQWLAARH-----AASLDRAERPMLEGYIAARSDGKA--T 93

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R LS  + +  +  +   T     L + + K++   P  L+E Q    V+ +L    
Sbjct: 94  SSNRRLSVFRRYYGWAVREHRTAVDPTLRIASAKQAPRFPSTLSEAQ----VEALLAAPD 149

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
            +T  +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+VP    V
Sbjct: 150 VDTP-LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPF-GEV 207

Query: 207 RKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
               +E Y     P  L       LF   RG  +    F   I++  +   + +  + HT
Sbjct: 208 AHGWIERYLRGARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHT 267

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 268 LRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 304


>gi|238793576|ref|ZP_04637200.1| Tyrosine recombinase [Yersinia intermedia ATCC 29909]
 gi|238727166|gb|EEQ18696.1| Tyrosine recombinase [Yersinia intermedia ATCC 29909]
          Length = 276

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 133/264 (50%), Gaps = 12/264 (4%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           E++ +   + L   ++R+ +S+ +   +   SL   LS ++SFL +L  + +   +    
Sbjct: 18  EQMGLMHWQTLDAAQVRSLVSRSKRAGLHSSSLALRLSALRSFLDWLVSQGVLQANPAKG 77

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +   +    LP+ ++  +   L+D  L         +  R+ A+L ++YG GLR+SE + 
Sbjct: 78  VSTPRSGRHLPKNIDVDEVDKLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVG 131

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           +  +++      + + GKG K R VP+  +    +  + +L   +L   +   +F    G
Sbjct: 132 MNCKHVDLASGEVWVMGKGSKERKVPIGRTAVTWLAHWLEL--RELFEPVDDAIFLANTG 189

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           K ++    Q+   +     G+      H LRHSFATH+L + GDLR++Q +LGH  L+TT
Sbjct: 190 KRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTT 249

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHP 319
           QIYT+++ ++    +  +YD  HP
Sbjct: 250 QIYTHLDFQH----LATVYDAAHP 269


>gi|328472418|gb|EGF43284.1| site-specific tyrosine recombinase XerC [Vibrio parahaemolyticus
           10329]
          Length = 310

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 152/301 (50%), Gaps = 16/301 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  E+GLS  T ++Y    +Q L  +A +  E + ++   Q+    +R    K   + + 
Sbjct: 24  LRSEKGLSLHTQRNY----KQQLETMAQHLAE-MGLKDWSQVDAGWVRQLAGKGMREGMK 78

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             SL   LS ++SF  +L  R   + +    +   +K   LP+ L+  +      N LL 
Sbjct: 79  ASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEV-----NQLLE 133

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            + E   +  R+ A++ L+YG GLR++E +S+  +++      LR+ GKGDK R VP   
Sbjct: 134 VN-EDDPLAIRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVIGKGDKERKVPFSG 192

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
              + + ++  +   DL    +  LF    G  ++    Q+ + +  +   +    + H 
Sbjct: 193 MATEWVGKWLRVR-GDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISPHK 251

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ ++    + + YDQ HP   +K
Sbjct: 252 LRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQH----LAQAYDQAHPRARKK 307

Query: 325 D 325
           +
Sbjct: 308 N 308


>gi|255764498|ref|YP_003065000.2| site-specific tyrosine recombinase XerD [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254547849|gb|ACT57060.2| site-specific tyrosine recombinase XerD [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 300

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 156/305 (51%), Gaps = 15/305 (4%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           ER  S  TL +Y+ D ++   FL     ++I++      S   + ++++    +K+   S
Sbjct: 5   ERASSINTLSAYKRDLKEMQNFL---NNKEISLSAA---STNHLISYLNHLSQRKLVTSS 58

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
            +R +S I+ F  +L    +  ++    +   KK++ LP+ L++     L++   +   +
Sbjct: 59  QRRKISVIRQFYNFLCYEGLRKDNPSDTLELPKKNHILPKTLHKDTIANLLEQAKIEAEN 118

Query: 148 ET--KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
               +W   R   ++ LLY  G+R+SE ++L+   +   + T+ IQGKG+K R+V L PS
Sbjct: 119 PAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQGKGNKERLVILSPS 178

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLF-RGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAH 263
              A+  Y   C         L LF    +   L+  VF R ++ L    G+   + + H
Sbjct: 179 ALHALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPH 238

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            +RH+FA+HLL  G DLR+IQ +LGH  +STTQIYT++      D + ++    HP + +
Sbjct: 239 IIRHAFASHLLEGGADLRTIQILLGHTDISTTQIYTHL----LPDKLQKLVQDYHP-LAK 293

Query: 324 KDKKN 328
           K+KK+
Sbjct: 294 KEKKH 298


>gi|300115010|ref|YP_003761585.1| integrase family protein [Nitrosococcus watsonii C-113]
 gi|299540947|gb|ADJ29264.1| integrase family protein [Nitrosococcus watsonii C-113]
          Length = 310

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 147/311 (47%), Gaps = 31/311 (9%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           + +  + R+++L +L   +G S+ T  +Y  D   +  +LA    +       RQ ++ +
Sbjct: 5   AVDFWQARKDFLAHLHYAKGYSQGTCYAYNSDLGIWGRWLAEAGND------WRQATHVD 58

Query: 71  IRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
              F++ + R +      + R  S + SF K+  K  +     I      K+   +P  L
Sbjct: 59  TEQFVAWQMRERGTKAHIVARRSSCLGSFYKWAMKNALVESDPIYLADKPKRPYRIPVWL 118

Query: 130 NEKQALT----------LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
            +++ L           L +N+  HT    K +  R   +  L+   GLRISEAL++  +
Sbjct: 119 EKEEQLAFQEAVQRTEDLPENIFGHTRAHIKTVRRRYDVLFGLILNSGLRISEALAVKVR 178

Query: 180 NIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIR 234
           ++        ++RI GKG++ R+VPL P     +L  +  D    D        +F    
Sbjct: 179 DVRVVNGIAKSVRIIGKGNRERLVPL-PEAFGQVLGAWLQDRAVGDF-------VFAKAP 230

Query: 235 G-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           G KPL P   + Y+R+L    G+    T H LRH++AT LL  G +L  IQ++LGH  LS
Sbjct: 231 GEKPLGPHAVRAYLRRLIERAGIDKPVTPHKLRHTYATRLLEAGAELVDIQALLGHVDLS 290

Query: 294 TTQIYTNVNSK 304
           TTQIYT+V+ +
Sbjct: 291 TTQIYTHVSEE 301


>gi|254511455|ref|ZP_05123522.1| tyrosine recombinase XerD [Rhodobacteraceae bacterium KLH11]
 gi|221535166|gb|EEE38154.1| tyrosine recombinase XerD [Rhodobacteraceae bacterium KLH11]
          Length = 318

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 146/312 (46%), Gaps = 28/312 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+    E G +  TL +Y  D + F  +L              +    +I  ++    
Sbjct: 13  TFLEAQAAELGAANNTLLAYGRDLKDFADWLMRRK------SGFAEADRDQIEGYLIDCD 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q +   +  R LS IK   ++  +      +  + ++   ++  LP+ L+  +    VD
Sbjct: 67  AQGLSRATRARRLSAIKQLYRFAFEEGWREANPAIQIKGPGRAKRLPKTLDVPE----VD 122

Query: 140 NVLLHTSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
             LL  +  T    A   RN+ ++ LLY  G+R++E +SL   +   D   L + GKG K
Sbjct: 123 R-LLEAARRTGRSAADRIRNTCLMELLYATGMRVTELVSLPVSSARGDPRMLLVLGKGGK 181

Query: 197 IRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLF----RGIRGKPLNPGVFQRYIR 248
            R+VPL P  R A+ E+     D     +    Q   F    RG  G  L    F   ++
Sbjct: 182 ERMVPLSPPARDALAEWLKQRDDAEERTVAKGGQASRFLFPSRGKSGY-LTRHRFFLLVK 240

Query: 249 QLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +L    G+ P   T HTLRH+FATHLL+NG DLRSIQ++LGH  ++TT+IYT+V  +   
Sbjct: 241 ELAVEGGVSPAKVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLDER-- 298

Query: 308 DWMMEIYDQTHP 319
             + E+  + HP
Sbjct: 299 --LAELVLEHHP 308


>gi|291166237|gb|EFE28283.1| integrase-recombinase [Filifactor alocis ATCC 35896]
          Length = 307

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 148/304 (48%), Gaps = 34/304 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFL---AFYTEEKITIQTIRQLSYTEIRAFISK 77
           +L+  E +  L+  T++SY+ D +Q+++FL     Y  ++I  + I  L   + R     
Sbjct: 10  YLKVCENQNNLNYKTVKSYKLDLKQYMVFLDKEENYYRKEILCKYIEMLHTKDYRV---- 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALT 136
                   +++KR ++ +K+F  YL    I   +  + +R  LK+   LP+ +     + 
Sbjct: 66  --------KTIKRKIATLKAFFSYLVYEDILEYNPFVKIRLRLKEPVILPKTI----PIV 113

Query: 137 LVDNVLLHTSHETKWID---------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            ++N+      E    D         +R+  IL +L   G+RISE   L  + I   +  
Sbjct: 114 YLENLFKCLYDERDNADKNTYKYKALSRDIIILEILISTGIRISELCDLRKEQISYSERM 173

Query: 188 LRIQGKGDKIRIVPLL-PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           +RI GKGDK RI+P+   ++ K I +Y +L      L I+   F       L+    +  
Sbjct: 174 IRIYGKGDKERILPVYNENLWKEIKQYEEL----FGLEIKGYFFINRINNKLSDQSVRNM 229

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           I++  +   +P++ T H  RH+FAT LL N  D R+IQ ILGH  ++TTQIYTN+ S   
Sbjct: 230 IKKNCKKASIPINITPHMFRHTFATLLLENDVDSRNIQQILGHSSITTTQIYTNITSNKK 289

Query: 307 GDWM 310
            + M
Sbjct: 290 IEIM 293


>gi|28899755|ref|NP_799360.1| site-specific tyrosine recombinase XerC [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153838746|ref|ZP_01991413.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ3810]
 gi|260878123|ref|ZP_05890478.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AN-5034]
 gi|260895820|ref|ZP_05904316.1| tyrosine recombinase XerC [Vibrio parahaemolyticus Peru-466]
 gi|260900847|ref|ZP_05909242.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ4037]
 gi|81726659|sp|Q87KJ6|XERC_VIBPA RecName: Full=Tyrosine recombinase xerC
 gi|28808007|dbj|BAC61244.1| integrase/recombinase XerC [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747832|gb|EDM58716.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ3810]
 gi|308087191|gb|EFO36886.1| tyrosine recombinase XerC [Vibrio parahaemolyticus Peru-466]
 gi|308092778|gb|EFO42473.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AN-5034]
 gi|308110579|gb|EFO48119.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ4037]
          Length = 310

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 152/301 (50%), Gaps = 16/301 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  E+GLS  T ++Y    +Q L  +A +  E + ++   Q+    +R    K   + + 
Sbjct: 24  LRSEKGLSLHTQRNY----KQQLETMAQHLAE-MGLKDWSQVDAGWVRQLAGKGMREGMK 78

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             SL   LS ++SF  +L  R   + +    +   +K   LP+ L+  +      N LL 
Sbjct: 79  ASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEV-----NQLLE 133

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            + E   +  R+ A++ L+YG GLR++E +S+  +++      LR+ GKGDK R VP   
Sbjct: 134 VN-EDDPLAIRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVIGKGDKERKVPFSG 192

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
              + + ++  +   DL    +  LF    G  ++    Q+ + +  +   +    + H 
Sbjct: 193 MATEWVGKWLRVR-GDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISPHK 251

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ ++    + + YDQ HP   +K
Sbjct: 252 LRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQH----LAQAYDQAHPRARKK 307

Query: 325 D 325
           +
Sbjct: 308 N 308


>gi|327483029|gb|AEA77436.1| Tyrosine recombinase XerC [Vibrio cholerae LMA3894-4]
          Length = 267

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 140/266 (52%), Gaps = 15/266 (5%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           QL    +R  + + + Q +   S+   LS ++SFL +L  R     +    +   +K  +
Sbjct: 15  QLDSAWVRQLVMQGKRQGMKASSIATRLSSLRSFLDFLILRGELEANPAKGVSAPRKQRT 74

Query: 125 LPRALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           LP+ L+       VD +  LL  + +   +  R+ AI+ L+YG GLR++E +S+  +++ 
Sbjct: 75  LPKNLD-------VDEMAQLLEVTDDDP-LSIRDRAIMELMYGAGLRLAELVSIDVKDVN 126

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
             +  +R+ GKG+K R V      ++ + ++  L    L  + +  LF    G  ++   
Sbjct: 127 LSEGEIRVIGKGNKERKVWFAGQAQEWVGKWLKLRS-QLADSAETALFVSKLGTRISHRS 185

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            Q+ + +  +   +    + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++
Sbjct: 186 VQKRMAEWGQKQAVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLD 245

Query: 303 SKNGGDWMMEIYDQTHPSITQKDKKN 328
            ++    + ++YDQ HP   +K+K +
Sbjct: 246 FQH----LAQVYDQAHPRARKKNKDD 267


>gi|253578510|ref|ZP_04855782.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850828|gb|EES78786.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 294

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 139/283 (49%), Gaps = 16/283 (5%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97
           SY+ D ++   FL     ++  I+  + +   E+  +IS    +K    S+ RS++ +++
Sbjct: 25  SYQRDLKKMAEFL-----KERGIRNYKDVKELELEGYISYMEREKFASSSISRSVASMRA 79

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
           F +YL K  +  E    N++  K     P  L  ++   L+    L T    K I  R+S
Sbjct: 80  FFQYLWKEGVIAEDPADNLKPPKVEKRAPEILTIEEVDKLLQQPKLDTP---KGI--RDS 134

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           A+L LLY  G+R+SE L L   ++ + Q    +  +  K RI+P+    +KA+  Y    
Sbjct: 135 AMLELLYATGMRVSEMLHLQIFDV-NLQFGYVVCNENGKERIIPIGIPCKKAMERYLQTA 193

Query: 218 -PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
               +    +  LF    GK ++   F + ++      G+      HTLRHSFA H+L N
Sbjct: 194 RTVFVKDEKETALFTNCSGKAMSRQGFWKVLKGYADDAGIKRDIAPHTLRHSFAVHMLQN 253

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           G D+RS+Q +LGH  +STTQ+Y  +N       M ++Y +THP
Sbjct: 254 GADIRSVQEMLGHSDISTTQVYLGMNMNK----MRDVYMKTHP 292


>gi|296447748|ref|ZP_06889663.1| tyrosine recombinase XerD [Methylosinus trichosporium OB3b]
 gi|296254725|gb|EFH01837.1| tyrosine recombinase XerD [Methylosinus trichosporium OB3b]
          Length = 314

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 134/291 (46%), Gaps = 18/291 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L  ERG ++ TL +Y  D   ++  L     E + + T        +RA+++  ++
Sbjct: 13  FLDMLAAERGAARNTLDAYRRDLEDYVAHLERTGAEPLGVTT------DGLRAYLATLQS 66

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   +  R LS ++ F K+L   +   +     +   ++ +S P  L   +   L++ 
Sbjct: 67  RGMTAATSARRLSALRQFHKFLYVDRYRADDPSTPLEGPRRQHSAPDILAMDEVERLLET 126

Query: 141 VLLHTSHETKWID-----ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
                  E++        AR  A+L  LY  GLR+SE +SL         S   ++GKG 
Sbjct: 127 AREGLEDESRAAGERLRAARLYALLETLYATGLRVSELVSLPASAARSRDSFFTVRGKGS 186

Query: 196 KIRIVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           K R+ P+ P  + A+  +  L     P   + +   P      G  L    F R ++   
Sbjct: 187 KERLAPMTPRAKAALTVFRALLAKHAPGLADSHFLFP-SDAAEGH-LTRQAFARDLKTAA 244

Query: 252 RYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              GL     + H LRH+FA+HLL NG DLR +Q +LGH  +STTQIYT+V
Sbjct: 245 AAAGLSARDISPHALRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHV 295


>gi|300812249|ref|ZP_07092687.1| tyrosine recombinase XerC [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496763|gb|EFK31847.1| tyrosine recombinase XerC [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|325686014|gb|EGD28073.1| site-specific tyrosine recombinase XerC [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 295

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 140/286 (48%), Gaps = 12/286 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L+ ER  S  T+ +Y+ D    L     + +E        Q+S  ++  ++   
Sbjct: 5   EQFLSYLKNERSYSPKTVLAYQKD----LAAAKKFWQENGGFPGWDQISRRDLEIYLLAT 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             QK+   +L R LS +KSF + L +R +      + ++  +    LP    + +   ++
Sbjct: 61  -GQKLASSTLSRKLSSLKSFYRLLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQVI 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            ++     ++ K +  RN AI+ L Y  G+R+SE   L  + +  +   + + GKG+K R
Sbjct: 120 RSL-----NDGKPLTVRNRAIVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDR 174

Query: 199 IVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            V      +K + EY       L  N      +F    G+P++     + ++Q+ +  GL
Sbjct: 175 YVFFDQESKKYLEEYLQAARPSLLKNEPDTGAVFLNKLGRPISSRGIAKAVQQIFQKAGL 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                 H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V+
Sbjct: 235 TAGAHPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVS 280


>gi|306819226|ref|ZP_07452937.1| possible integrase/recombinase XerD [Mobiluncus mulieris ATCC
           35239]
 gi|307700216|ref|ZP_07637257.1| site-specific tyrosine recombinase XerC [Mobiluncus mulieris
           FB024-16]
 gi|304648008|gb|EFM45322.1| possible integrase/recombinase XerD [Mobiluncus mulieris ATCC
           35239]
 gi|307614598|gb|EFN93826.1| site-specific tyrosine recombinase XerC [Mobiluncus mulieris
           FB024-16]
          Length = 361

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 150/346 (43%), Gaps = 58/346 (16%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFL----------AFYTEEKITIQTIRQLSYTE---- 70
           L   RG S  +L++Y  D R+ L FL                +    + R  +  E    
Sbjct: 21  LRANRGFSPHSLRAYLGDLRELLEFLCPPVALVPAAGLAAPPRSGESSGRGFAAPELSRA 80

Query: 71  ------IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
                 IRA++     +     +L R ++  ++F  +  K    +  + L + + K  NS
Sbjct: 81  LSDPARIRAWLGDMSRRGASRATLARRVASFRTFSAWALKHGFMSCDSGLRLHSPKPDNS 140

Query: 125 LPRALNEKQALTLVDNVLLHT--------------------------SHETKWIDARNSA 158
           LP  L+E Q   L++   L                             +    +  R+ A
Sbjct: 141 LPTVLSEAQVARLLNTARLQAYSLGVHQKASKSQAEIPDSIPGDSAVPNRVNPVGLRDWA 200

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD--- 215
           +L LLY  G+R+SE   L  ++I   ++T+R+ GKG K R+ P       A+ EY +   
Sbjct: 201 LLELLYATGVRVSELTGLRLRDISRSEATIRVCGKGGKERVAPYGIPAGIALDEYLEQGR 260

Query: 216 --LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
             L   D +    +  F G++G  L+  + +  + ++    G+P     H LRH+ ATHL
Sbjct: 261 PVLVSPDRDAGEWV--FLGVKGGRLDTRLVRGMLHRMTAVAGVP-DLGPHGLRHTAATHL 317

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           L+ G DLR +Q ILGH  L TTQ YT++++ +    + ++Y Q HP
Sbjct: 318 LNGGADLRCVQEILGHASLGTTQRYTHLSTAH----LRQVYLQAHP 359


>gi|238763615|ref|ZP_04624575.1| Tyrosine recombinase [Yersinia kristensenii ATCC 33638]
 gi|238698093|gb|EEP90850.1| Tyrosine recombinase [Yersinia kristensenii ATCC 33638]
          Length = 263

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 133/264 (50%), Gaps = 12/264 (4%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           E++ +   + L   ++R+ +S+ +   +   SL   LS ++SFL +L  + +   +    
Sbjct: 5   EQMGLAHWQTLDAAQVRSLVSRSKRAGLHSSSLALRLSALRSFLNWLVSQGVMQVNPAKG 64

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +   +    LP+ ++  +   L+D  L         +  R+ A+L ++YG GLR+SE + 
Sbjct: 65  VSTPRSGRHLPKNIDVDEVDKLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVG 118

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           +  +++      + + GKG K R VP+  +  K +  + +L   +L       +F    G
Sbjct: 119 MNCKHVDLASGEVWVMGKGSKERKVPIGKTAVKWLEHWLEL--RELFEPQDDAIFLANTG 176

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           K ++    Q+   +     G+      H LRHSFATH+L + GDLR++Q +LGH  L+TT
Sbjct: 177 KRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTT 236

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHP 319
           QIYT+++ ++    +  +YD  HP
Sbjct: 237 QIYTHLDFQH----LATVYDAAHP 256


>gi|328948447|ref|YP_004365784.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489]
 gi|328448771|gb|AEB14487.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489]
          Length = 307

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 160/335 (47%), Gaps = 43/335 (12%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +PE + FE  +E   +L ++   RGLS+ TL SY  D   F  F           ++   
Sbjct: 1   MPETL-FECSEEFLIYLGSV---RGLSENTLLSYRQDLAHFCEFFG-------NDKSAEG 49

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           L+  ++R F+     +K    S+ R +S ++    YLKK    +++    ++ L++  +L
Sbjct: 50  LTLEDLRLFVGYLSRRKYSVASINRIISAVRGLFAYLKKFGYISKNVSYELKCLRQPKTL 109

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           PR +++ +    +DNV      +     +R+ AI  ++Y  G R+SE  SL  Q+   D 
Sbjct: 110 PRFMSQVE----IDNVCRQPEKKELLWASRDKAIFEMMYSSGCRVSELASLKFQDFTSDF 165

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----------CPFDLNLNIQLPLFRGIR 234
            +  + GKG K R V      R +++ Y              C  +++      +F   +
Sbjct: 166 RSAIVTGKGKKDRRVYFEQDARNSLMLYLKERKARFPQAEKGCAGEVS-----RIFLSQK 220

Query: 235 GKPLNP-GVFQRYIRQLRRYLGLPLS---TTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
           G  L+  G++  YI  + RY G+  +    + H  RH+FAT +L++G D+R +Q +LGH 
Sbjct: 221 GTALSAHGIW--YI--VSRYTGIEGTGSHVSPHAFRHTFATGMLNSGADIRIVQELLGHS 276

Query: 291 RLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
            +STTQ YT+V  +     + ++Y Q  P   +KD
Sbjct: 277 NISTTQRYTHVTLER----LKKVYSQAFPHSGKKD 307


>gi|322806106|emb|CBZ03673.1| tyrosine recombinase XerD [Clostridium botulinum H04402 065]
          Length = 263

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 132/249 (53%), Gaps = 10/249 (4%)

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           I AF+   + +     S+ R++  +++F KYL K+ + +E   L     K   ++P+ L+
Sbjct: 23  IMAFVQYLQREGRATSSIVRNIVSVRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILS 82

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            ++    VD +L   +   K +  R+ A+L L+Y  G++I+E L+L   +I    + ++ 
Sbjct: 83  VEE----VDKLLNSPNSSKKGL--RDKAMLELMYATGVKITELLNLNIYDINLKFNYIKC 136

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +G   + RI+P+     K +  Y ++ P     N+   LF  ++G  +    F + I+  
Sbjct: 137 RGSKKRERIIPIGSYAIKCLKNYLEVRPAINVYNLDY-LFLNLKGTQMTRQGFWKIIKFY 195

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +   +     ++TLRHSFA HLL NG D++S+Q +LGH  L+ TQIY++++ K+    +
Sbjct: 196 AKEASIDKEIDSYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSK---I 252

Query: 311 MEIYDQTHP 319
            E+Y   HP
Sbjct: 253 AEVYKNAHP 261


>gi|300024678|ref|YP_003757289.1| tyrosine recombinase XerD [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526499|gb|ADJ24968.1| tyrosine recombinase XerD [Hyphomicrobium denitrificans ATCC 51888]
          Length = 309

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 139/290 (47%), Gaps = 22/290 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L  ERG S  T+++Y  D   FL +L+  +   +++ T        I+ +I+    
Sbjct: 14  FLDMLTAERGASPNTIEAYRGDLEGFLDYLSDGSVAPLSVGT------QNIQGYIAAMAN 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                 S  R LS IK + ++L    +        ++  KK  SLP+ L+    +  VD 
Sbjct: 68  AGQAPTSRSRRLSAIKQYYRFLFAEGLIGADPTSGLQGPKKQRSLPKVLS----IAEVDR 123

Query: 141 VLLHTSHETKWIDARN-------SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           +L  +    + ++ R          +L LLY  G+R+SE + L    +  D+    I+GK
Sbjct: 124 LLDASQKRCEGVEGRAMFRALRFHCLLELLYATGMRVSELVGLPRTVLRGDKRVFSIKGK 183

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G + R+VPL    R A+  + ++   FD N     P  +   G  +    F + ++ +  
Sbjct: 184 GGRERLVPLNAEARAALDRFLEVSGRFD-NSPWLFP-SKSASGH-MTRQRFAQDLKDVAA 240

Query: 253 YLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             G+     + H LRH+FA+HLL  G DLR++Q +LGH  +STT+IYT+V
Sbjct: 241 EAGIGGDRISPHVLRHAFASHLLDRGADLRTVQQLLGHADISTTEIYTHV 290


>gi|90422054|ref|YP_530424.1| tyrosine recombinase XerD [Rhodopseudomonas palustris BisB18]
 gi|90104068|gb|ABD86105.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris
           BisB18]
          Length = 320

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 138/300 (46%), Gaps = 32/300 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  +  E+G  K TL +Y  D      FL       +   T        +R ++++   
Sbjct: 15  FLDMIAAEQGAGKNTLDAYRGDLTDLSDFLGHARSSFVAADT------EVLRGYLAELDE 68

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     S+ R LS  +   ++L   +I  +     +   K+   LP+ L+    +  VD 
Sbjct: 69  RGYKSTSVARKLSAFRHLFRFLLTERIRADDPAAILSGPKRGRGLPKVLS----IADVDR 124

Query: 141 VLLHTSH---------ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           +L H            + +   AR   +L +LY  GLR+SE +SL       D   + ++
Sbjct: 125 LLQHAKDLIAAPHANTQQRLRAARLYCLLEVLYATGLRVSELVSLPLSAARRDARMIVVR 184

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFD-------LNLNIQLPLFR--GIRGKPLNPGV 242
           GKG+K R+VPL  S ++A+  Y  L   D        N +    LF   G  G  L    
Sbjct: 185 GKGNKERLVPLNESSKQAMAGY--LAALDELRQEKAKNASASKWLFPSFGESGH-LTRQH 241

Query: 243 FQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           F R ++ L    GL P   + H LRH+FA+HLL NG DLR +Q++LGH  +STTQIYT+V
Sbjct: 242 FARELKDLAGAAGLSPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHV 301


>gi|315125203|ref|YP_004067206.1| site-specific recombinase [Pseudoalteromonas sp. SM9913]
 gi|315013716|gb|ADT67054.1| site-specific recombinase [Pseudoalteromonas sp. SM9913]
          Length = 314

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 152/310 (49%), Gaps = 43/310 (13%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFY----TEEKITIQTIRQLSYTEIRAFISKRRT 80
           L+ ER  S  T+  Y       L F A Y     +    +Q+        IR +    R 
Sbjct: 26  LKFERQYSAHTVNQYVSQ----LGFAALYFNKLCDNWFAVQS------EHIRRYSMALRA 75

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNEKQALT 136
           +++  R++   LS I+S  K+LK + IT + +  N    ++  K +  LP+ L+  Q   
Sbjct: 76  KQLSGRTISLKLSCIRSLYKFLKAKNITEQPHYHNPAQGIKGPKFAKPLPKNLDVDQMAR 135

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L++        +   +  R+ A++ L+Y  GLRISE +    Q+I      + ++GKG K
Sbjct: 136 LLEIP------DDDPLAIRDKAMMELMYSSGLRISELVGANMQDINARNGEILVRGKGAK 189

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-- 254
            R++P+     +A+ ++  + P  +  + +  +F   +   ++       +RQ+R  +  
Sbjct: 190 ERLIPVGSKALEALKKWLAVRPLFMGAD-EHAVFLSSKKNRIS-------VRQVRLRMQE 241

Query: 255 -----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+      H LRHSFA+H+L + GDLR++Q +LGH  LS TQ+YT+++ ++    
Sbjct: 242 WGIKQGISSQVHPHKLRHSFASHILESSGDLRAVQELLGHSSLSATQVYTHLDFQH---- 297

Query: 310 MMEIYDQTHP 319
           + ++YD THP
Sbjct: 298 LAKVYDNTHP 307


>gi|225023845|ref|ZP_03713037.1| hypothetical protein EIKCOROL_00711 [Eikenella corrodens ATCC
           23834]
 gi|224943319|gb|EEG24528.1| hypothetical protein EIKCOROL_00711 [Eikenella corrodens ATCC
           23834]
          Length = 307

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 146/313 (46%), Gaps = 34/313 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + WL +L+ ++  S  TL +Y  D    L +LA +       Q   +L+     A + + 
Sbjct: 10  EAWLHSLQ-QQNHSPHTLAAYRRD----LTWLADF-------QPQSKLARPLFTAALRQL 57

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q    RS+ R LS  + F ++L +           ++  K    LP+A+  +    L+
Sbjct: 58  GQQNQHPRSIARRLSAWRQFCRWLVQTGYLKADPTHGLKAPKAPERLPKAVPAEPLNQLL 117

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D    +       +D+R+ AI  LLYG GLR++EA +L   ++      + + GKG K R
Sbjct: 118 DQAPENP------LDSRDLAIFELLYGSGLRLAEACALDLDDLNLQSGWIAVTGKGRKQR 171

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYL 254
            +PL     +A+  Y       L      P    LF G  G+ L     Q+ ++Q   + 
Sbjct: 172 HLPLTAQSIRALAGY-------LKTRTAAPDETALFTGRTGRRLGARQIQKRLQQFATHH 224

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G     + H LRHS+A+HLL N  D+R++Q +LGH +L+TTQ YT ++     D +  IY
Sbjct: 225 G-SRHLSPHMLRHSYASHLLQNARDIRAVQELLGHSQLATTQHYTKLDF----DHLARIY 279

Query: 315 DQTHPSITQKDKK 327
           D  HP   ++  K
Sbjct: 280 DDAHPRAKRRQGK 292


>gi|163759949|ref|ZP_02167033.1| tyrosine recombinase [Hoeflea phototrophica DFL-43]
 gi|162282907|gb|EDQ33194.1| tyrosine recombinase [Hoeflea phototrophica DFL-43]
          Length = 313

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 150/323 (46%), Gaps = 32/323 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ +  ERG +  TL++Y  D       +      K    T+ + +   IR  IS  
Sbjct: 10  EAFLEMMSAERGAALNTLEAYRRDLDDASSVV------KALGSTLDRANADTIRTVISDL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S  R LS ++ F K+L    +  +     + + +K  SLP+ L+       V
Sbjct: 64  AARGFSPASQARRLSALRQFYKFLHAEGLRDDDPTGVVESPRKRRSLPKILS-------V 116

Query: 139 DNV-LLHTSHETKWIDARNS----------AILYLLYGCGLRISEALSLTPQNIMDDQST 187
           D+V  L    E     AR+           A+L LLY  G+R+SE + L  + + +D   
Sbjct: 117 DDVSRLLAQAEADISKARDESETTQRIRFRALLELLYATGMRVSELVGLPYRVLAEDGRF 176

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           L I+GKG K R+VP+    R A+  +  ++           P         L+  VF R 
Sbjct: 177 LIIRGKGAKERMVPMSRPARLALEAWMAEIGEVAEETGFLFPA--NSSDGHLSRQVFARE 234

Query: 247 IRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           ++ +    GLP +  + H LRH+FA+HLL+ G DLR++Q +LGH  +STTQIYT+V  + 
Sbjct: 235 LKDVAARAGLPSAKVSPHVLRHAFASHLLAGGADLRAVQKLLGHTDISTTQIYTHVLDER 294

Query: 306 GGDWMMEIYDQTHPSITQKDKKN 328
               + ++  + HP   Q   ++
Sbjct: 295 ----LKQLVSEHHPLAKQPKNRD 313


>gi|227875947|ref|ZP_03994070.1| possible integrase/recombinase XerD [Mobiluncus mulieris ATCC
           35243]
 gi|227843479|gb|EEJ53665.1| possible integrase/recombinase XerD [Mobiluncus mulieris ATCC
           35243]
          Length = 361

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 150/346 (43%), Gaps = 58/346 (16%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFL----------AFYTEEKITIQTIRQLSYTE---- 70
           L   RG S  +L++Y  D R+ L FL                +    + R  +  E    
Sbjct: 21  LRANRGFSPHSLRAYLGDLRELLEFLCPPVALVPAAGLAAPPRSGESSGRGFAAPELSRA 80

Query: 71  ------IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
                 IRA++     +     +L R ++  ++F  +  K    +  + L + + K  NS
Sbjct: 81  LSDPARIRAWLGDMSRRGASRATLARRVASFRTFSAWALKHGFMSCDSGLRLHSPKPDNS 140

Query: 125 LPRALNEKQALTLVDNVLLHT--------------------------SHETKWIDARNSA 158
           LP  L+E Q   L++   L                             +    +  R+ A
Sbjct: 141 LPTVLSEAQVARLLNTARLQAYSLGVHQKASKSQAEIPDSIPGDSAVPNRVNPVGLRDWA 200

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD--- 215
           +L LLY  G+R+SE   L  ++I   ++T+R+ GKG K R+ P       A+ EY +   
Sbjct: 201 LLELLYATGVRVSELTGLRLRDISRSEATIRVCGKGGKERVAPYGIPAGIALDEYLEQGR 260

Query: 216 --LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
             L   D +    +  F G++G  L+  + +  + ++    G+P     H LRH+ ATHL
Sbjct: 261 PVLVSPDRDAGEWV--FLGVKGGRLDTRLVRGMLHRMTAVAGVP-DLGPHGLRHTAATHL 317

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           L+ G DLR +Q ILGH  L TTQ YT++++ +    + ++Y Q HP
Sbjct: 318 LNGGADLRCVQEILGHASLGTTQRYTHLSTTH----LRQVYLQAHP 359


>gi|119384024|ref|YP_915080.1| phage integrase family protein [Paracoccus denitrificans PD1222]
 gi|119373791|gb|ABL69384.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 323

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 130/284 (45%), Gaps = 31/284 (10%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           TL +Y  D R F+ +LA   E  +T+          +  ++S    Q +   +  R LS 
Sbjct: 29  TLLAYGRDLRDFVDWLAARDETLLTV------PREGVEDYLSHCDAQGLSRATRARRLSA 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           I+   ++        +     +    ++  LP+ L+  +   ++D +     +ET+   A
Sbjct: 83  IRQLTRFALDEGWREDDPAGRISGPGRAQRLPKVLDRAEVQAMLDALPRIGRNETE--RA 140

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI---L 211
           RN  ++ L+Y  G+R+SE +SL       D + L I+GKG K R+VPL    R+A+   L
Sbjct: 141 RNLVLVELVYATGMRVSELVSLPVGACRGDPALLLIRGKGGKERMVPLSDPARRALAAWL 200

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGK--------PLNPGVFQRYIRQLRRYLGL------P 257
           +  D  P       + PL R + GK        P   G   R                 P
Sbjct: 201 KRRDDAP------AESPLGRLVAGKGARWLFPAPSREGHMTRQAMNALLGQLALAAGIDP 254

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              + H +RH+FATHLL  G DLR+IQ++LGH  L TT+IYT+V
Sbjct: 255 ARVSPHVIRHAFATHLLEGGADLRAIQTLLGHADLGTTEIYTHV 298


>gi|298373800|ref|ZP_06983789.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274852|gb|EFI16404.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058]
          Length = 307

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 145/293 (49%), Gaps = 25/293 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N+   L +E+ +S+ T+ +Y  D      +L     + I I   RQ + T ++  I +  
Sbjct: 11  NYRVFLTMEKSMSENTVVAYIRDLHTLSEYL-----DGIGID-YRQATLTNLKNLIVELT 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              I  RS  R +SGIKSF ++    ++        +   +    LP  L+ ++   ++ 
Sbjct: 65  DLGISGRSRARMISGIKSFYRFCIIDRLLEADPTEQLEQPQLPLYLPDVLSVEEIDRII- 123

Query: 140 NVLLHTSHETKW----IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            V +  S   K+    I  RN AI+ +LYG G+R+SE +     +I  D+  ++I GKG+
Sbjct: 124 -VTIDLSEVDKYTKLNIGHRNLAIVEVLYGSGVRVSELVYAKISDINFDEKFIKILGKGN 182

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-------LFRGIRGKPLNPGVFQRYIR 248
           K R+VPL     +AI  ++      L   +  P       +F   RG  +   +    I+
Sbjct: 183 KERLVPLSDPAIRAINNWF------LARRVLTPKPKHEDYIFLNRRGARMTRQMVFLAIK 236

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            +    G+  + + HT RHSFATHLL NG +LR+IQ +LGH  ++TT+IYT+V
Sbjct: 237 NMVEKAGITKTVSPHTFRHSFATHLLENGANLRAIQQLLGHASITTTEIYTHV 289


>gi|91227527|ref|ZP_01261864.1| tyrosine recombinase [Vibrio alginolyticus 12G01]
 gi|91188551|gb|EAS74843.1| tyrosine recombinase [Vibrio alginolyticus 12G01]
          Length = 310

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 151/301 (50%), Gaps = 16/301 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  E+GLS  T ++Y    +Q L  +A +  E + ++   Q+    +R    K   + + 
Sbjct: 24  LRSEKGLSLHTQRNY----KQQLETMAQHLAE-MGLKDWSQVDAGWVRQLAGKGMREGMK 78

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             SL   LS ++SF  +L  R   + +    +   +K   LP+ L+  +   L++     
Sbjct: 79  ASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVSQLLE----- 133

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
             +E   +  R+ A++ L+YG GLR++E + +  +++      LR+ GKGDK R VP   
Sbjct: 134 -VNEDDPLAVRDRAMMELMYGAGLRLAELVGVDVRDVQLRSGELRVIGKGDKERKVPFSG 192

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
              + + ++  +   DL    +  LF    G  ++    Q+ + +  +   +    + H 
Sbjct: 193 MATEWVGKWLRVR-GDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISPHK 251

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ ++    + + YDQ HP   +K
Sbjct: 252 LRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQH----LAQAYDQAHPRARKK 307

Query: 325 D 325
           +
Sbjct: 308 N 308


>gi|300690586|ref|YP_003751581.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07]
 gi|299077646|emb|CBJ50282.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07]
          Length = 308

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 150/319 (47%), Gaps = 24/319 (7%)

Query: 7   PEIVSFELLKER--QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           PE+++   L     Q +   L +E GL++ TL +Y  D    L   A +  E+   + I 
Sbjct: 6   PEVLAPARLSAETIQRFCDALWLEDGLARNTLDAYRRD----LTLYAQWLAERG--KAID 59

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           Q    ++  + + R  +     S  R  +  K F ++  +  + +      +   K+   
Sbjct: 60  QTEDGDLADYFAARHAESRAS-SANRRRTVFKRFFQWALREHVISADPSRLLSTAKQPPR 118

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           +P+ L+E Q   L+    + T      +  R+ A++ L+Y  GLR+SE ++L    +  +
Sbjct: 119 IPKTLSEAQVEALIAAPDIDTP-----LGLRDRAMIELMYASGLRVSEIVALKTVEVGLN 173

Query: 185 QSTLRI-QGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           +  +R+  GKG K R+VP        +  Y  D     L       LF   RG  +    
Sbjct: 174 EGVVRVVSGKGGKDRLVPFGAEAGDWLRRYLRDGRTALLGERTADALFVTARGDGMTRQA 233

Query: 243 FQRYIRQ--LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           F   I++  LR  L  PLS   HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+
Sbjct: 234 FWHLIKRYALRADLHAPLSP--HTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTH 291

Query: 301 VNSKNGGDWMMEIYDQTHP 319
           V  +     +  ++ Q HP
Sbjct: 292 VARER----LRTLHAQHHP 306


>gi|225573518|ref|ZP_03782273.1| hypothetical protein RUMHYD_01711 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039115|gb|EEG49361.1| hypothetical protein RUMHYD_01711 [Blautia hydrogenotrophica DSM
           10507]
          Length = 294

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 142/284 (50%), Gaps = 18/284 (6%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97
           SYE D  +   +L     E+  +    +++ T++  ++S  R  K    ++ RS++ I++
Sbjct: 25  SYERDLNKMAAYL-----ERQGVYNPLKVTETDLNGYLSYLRRNKFAASTISRSVASIRA 79

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
           F ++L +     +    N++  K     P  L  ++    VD +L   S +T     R+ 
Sbjct: 80  FYQFLFRAHQIVQDPSENLKPPKVEKKTPEILTVEE----VDLLLRQPSLDTAK-GLRDK 134

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           A+L LLY  G+R+SE + L   ++  +   +    +G + R++P     ++A+++Y +  
Sbjct: 135 AMLELLYATGMRVSELMHLKVSDVNLNLGYVDC-SEGARERVIPFGNVCKRALVQYLEQG 193

Query: 218 --PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
              F       + LF    GK ++   F + ++      G+    T HTLRHSFA H+L 
Sbjct: 194 REAFQRKGETDI-LFPNCSGKMMSRQGFWKVLKGYASAAGITTDITPHTLRHSFAAHMLQ 252

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           NG D++S+Q +LGH  +STTQ+Y N+N     + M ++Y Q HP
Sbjct: 253 NGADIKSLQEMLGHSDISTTQMYLNLNM----NRMRDVYMQAHP 292


>gi|156972655|ref|YP_001443562.1| site-specific tyrosine recombinase XerC [Vibrio harveyi ATCC
           BAA-1116]
 gi|166918907|sp|A7N0V8|XERC_VIBHB RecName: Full=Tyrosine recombinase xerC
 gi|156524249|gb|ABU69335.1| hypothetical protein VIBHAR_00307 [Vibrio harveyi ATCC BAA-1116]
          Length = 313

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 151/301 (50%), Gaps = 16/301 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  E+GLS  T ++Y    +Q L  +A +  E + ++   Q+    +R    K   + + 
Sbjct: 24  LRSEKGLSLHTQRNY----KQQLETMAHHLAE-MGLKDWSQVDAGWVRQLAGKGMREGMK 78

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             SL   LS ++SF  +L  R     +    +   +K   LP+ L+  +      N LL 
Sbjct: 79  ASSLATRLSSLRSFFDFLILRGEMLANPAKGVSAPRKKRPLPKNLDVDEV-----NQLLE 133

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            + E   +  R+ A++ L+YG GLR++E +S+  +++      LR+ GKGDK R VP   
Sbjct: 134 VN-EDDPLAVRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVIGKGDKERKVPFSG 192

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
              + + ++  +   DL    +  LF    G  ++    Q+ + +  +   +    + H 
Sbjct: 193 MATEWVGKWLRVR-GDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISPHK 251

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ ++    + + YDQ HP   ++
Sbjct: 252 LRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQH----LAQAYDQAHPRARKR 307

Query: 325 D 325
           +
Sbjct: 308 N 308


>gi|317494831|ref|ZP_07953242.1| tyrosine recombinase XerC [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917156|gb|EFV38504.1| tyrosine recombinase XerC [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 303

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 151/304 (49%), Gaps = 23/304 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L +ER LS  T++SY     Q +  +   +     ++  RQL   ++R   ++ 
Sbjct: 13  EAFLRFLRVERQLSPHTIESYH---HQLMAIIEIVSAS--GLRDWRQLDSNQVRMITARS 67

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +   +   S+   LS ++SFL +   + + + +    +   K++  LP+ L+       V
Sbjct: 68  KRMGLEAASIALRLSSLRSFLDWQVSQGVMSVNPAKGISAPKQARHLPKNLD-------V 120

Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           D+V  LL        +  R+  +L ++YG GLR+SE + L  +++      + + GKG K
Sbjct: 121 DDVNRLLEIDSSDP-LAVRDRTMLEVMYGAGLRLSELVGLDCRHMNMASGEVWVLGKGSK 179

Query: 197 IRIVPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R +P+    R AI       P  ++   +   +F    GK ++    Q+   +     G
Sbjct: 180 ERKLPI---GRTAIHWLEQWLPLREIYDPVDDAVFVSKLGKRISVRSVQKRFAEWGVKQG 236

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +      H LRHSFATH+L + GDLR++Q +LGH  L+TTQIYT+++ ++    + ++YD
Sbjct: 237 VTSHINPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----LAKVYD 292

Query: 316 QTHP 319
             HP
Sbjct: 293 AAHP 296


>gi|161610765|ref|YP_067311.2| site-specific tyrosine recombinase XerD [Rickettsia typhi str.
           Wilmington]
          Length = 306

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 153/298 (51%), Gaps = 24/298 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L  ER LSK ++ SY+   R  L F  + T++KI+   I   +   IR +I   
Sbjct: 5   EQFLEMLLAERALSKNSILSYK---RDLLDFHNYLTKQKISELNI---TTRNIRKWIEYL 58

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            +  +  RS+ R +S IKS+  +L     T  + +LN+   K  N LP  L+  Q    +
Sbjct: 59  ASNNLHARSINRKISTIKSYYTFLISENHTAFNPVLNVDLPKYQNKLPVILSIDQ----I 114

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-------LRIQ 191
             +L + S +      R +A+++LLY  GLR+SE +SL   +I+ + ++         + 
Sbjct: 115 KLILEYCSKDHTPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNNTSKGIVRKIFSVL 174

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-----IQLPLFRGIRGKPLNPGVFQRY 246
           GKG+K R++ +      +I +Y  +    +N       I L     + G  +    F   
Sbjct: 175 GKGNKERVIVINDQAVLSITKYLKIRDIFVNKAKSKNLIYLFPSSAVAGY-MTRQNFAIL 233

Query: 247 IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           ++ +   +GL P + + H LRHSFA+HLL  G DLR IQ +LGH  +STTQIYT++++
Sbjct: 234 LKSVALDIGLNPKNVSPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLHT 291


>gi|262404865|ref|ZP_06081419.1| tyrosine recombinase XerC [Vibrio sp. RC586]
 gi|262348949|gb|EEY98088.1| tyrosine recombinase XerC [Vibrio sp. RC586]
          Length = 310

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 151/302 (50%), Gaps = 16/302 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  E+GLS  T ++Y+        +LA     ++ + +  QL    +R  +   + Q + 
Sbjct: 24  LHSEKGLSLYTQRNYKQQLETMARYLA-----QVGLTSWPQLDAAWVRQLVVLGKRQGMK 78

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S+   LS ++SFL +L  R     +    +   +K   LP+ L+  +   L++     
Sbjct: 79  ASSISTRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRPLPKNLDVDEMAQLLEVT--- 135

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
              +   +  R+ AI+ L+YG GLR++E +S+  +++      +R+ GKG+K R V    
Sbjct: 136 ---DDDPLSIRDRAIMELMYGSGLRLAELVSIDVKDVNLRDGEIRVIGKGNKERKVWFAG 192

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             ++ +  +  L     N + +  LF    G  ++    Q+ + +  +   +    + H 
Sbjct: 193 QAQEWVGNWLKLRSQLANSD-ETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPHK 251

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ ++    + ++YDQ HP   +K
Sbjct: 252 LRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQH----LAQVYDQAHPRARKK 307

Query: 325 DK 326
           +K
Sbjct: 308 NK 309


>gi|296171500|ref|ZP_06852764.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295894062|gb|EFG73823.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 298

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 135/304 (44%), Gaps = 28/304 (9%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L ++ G S  T ++Y  D R  L FLA           +  LS   +R+++S        
Sbjct: 12  LALQCGRSAHTRRAYLGDLRSLLTFLADRGA------GLDGLSLPLLRSWLSAGAAAGAA 65

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +L R  S +K+F  +  +R +        ++  K   +LP  L + QAL  +      
Sbjct: 66  RTTLARRTSAVKAFTAWAARRGLLAADPGARLQVPKAHRTLPAVLRQDQALDAM-AAAKS 124

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            + +   +  R+  I+ +LY  G+R+SE   L   ++      +R+ GKG+K R VP   
Sbjct: 125 GAQQGDPMALRDRLIVEMLYATGIRVSELCGLDVDDVDTGHRLVRVLGKGNKQRTVPFGM 184

Query: 205 SVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL--------G 255
               A+  + D   P  +       L  G RG+ L+       +RQ R  +        G
Sbjct: 185 PAADALRAWLDDGRPALVTAESGPALLLGARGRRLD-------VRQARTVVHQTVSAVDG 237

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            P     H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V        +  +++
Sbjct: 238 AP-DMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSR----LRAVHE 292

Query: 316 QTHP 319
           Q HP
Sbjct: 293 QAHP 296


>gi|251787836|ref|YP_003002557.1| site-specific tyrosine recombinase XerC [Dickeya zeae Ech1591]
 gi|247536457|gb|ACT05078.1| tyrosine recombinase XerC [Dickeya zeae Ech1591]
          Length = 302

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 146/307 (47%), Gaps = 29/307 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L +ER LS LT +SY     Q  + +   +   I     + L    +RA +++ 
Sbjct: 12  EAFLRYLRVERQLSPLTQRSY---AHQLQVIIEMLSSSGIA--EWQALDAAGVRAVVARS 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +   +   SL + LS ++S L +L  R     +    +   K    LP+ ++  +   L+
Sbjct: 67  KRDGLNAASLAQRLSALRSLLDWLVGRGELKANPARGVPAPKAGRHLPKNMDVDEMNRLL 126

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +  L         +  R+ A+L ++YG GLR++E + L   +I  +   + + GKG K R
Sbjct: 127 EIDL------NDPLAVRDRAMLEVMYGAGLRLAELVGLDCGHINLESGEVWVMGKGSKER 180

Query: 199 IVPLLPSVRK------AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
            +P+  +         AI E Y   P D        +F    GK ++    Q+   +   
Sbjct: 181 RLPVGATAVTWLTHWLAIREIY--APEDD------AVFISSLGKRISMRNVQKRFAEWGV 232

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+      H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 233 KQGVNSHVNPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LAS 288

Query: 313 IYDQTHP 319
           +YD  HP
Sbjct: 289 VYDAAHP 295


>gi|170698617|ref|ZP_02889685.1| tyrosine recombinase XerD [Burkholderia ambifaria IOP40-10]
 gi|170136470|gb|EDT04730.1| tyrosine recombinase XerD [Burkholderia ambifaria IOP40-10]
          Length = 320

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 132/279 (47%), Gaps = 15/279 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E GL++ TL +Y  D   F  +LA   +  +            +  +I+ R   K  
Sbjct: 39  LWLEHGLARNTLDAYRRDLVLFSQWLAATHDAPLD-----SADEAMLIGYIAARSDGKA- 92

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R LS  + +  +  +    +    L + + K++   P  L+E Q   L+    + 
Sbjct: 93  -TSSNRRLSVFRRYYGWAVREHRASADPTLRITSAKQAARFPSTLSEAQVEALLGAPDIG 151

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           T      +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+VP   
Sbjct: 152 TP-----LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPF-G 205

Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            V    +E Y  D  P  L       LF   RG  +    F   I++  +   +    + 
Sbjct: 206 EVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQAAVRAHLSP 265

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 266 HTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 304


>gi|258654185|ref|YP_003203341.1| tyrosine recombinase XerD [Nakamurella multipartita DSM 44233]
 gi|258557410|gb|ACV80352.1| tyrosine recombinase XerD [Nakamurella multipartita DSM 44233]
          Length = 353

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 150/345 (43%), Gaps = 47/345 (13%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           S EL+   + +L +L +ERG+++ T+ SY  D  ++L FLA     ++       ++  +
Sbjct: 17  SPELVAALRGYLDHLVVERGVARNTVLSYRRDLNRYLQFLAAAGRTRVA-----DVTAAD 71

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIK-----SFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +  F+   RT   G   L  S +         + ++L            ++     +  L
Sbjct: 72  VSDFLVCLRTGADGRPPLAASSAARAVVAARGWHRFLLNEGTAEADPSRDVHPPTPARRL 131

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT-------- 177
           P+AL  +    L+D          + +  R+ A+L LLY  G RISE + L         
Sbjct: 132 PKALPVEAIGRLLDAAGSADPDGPRGL--RDRALLELLYATGARISEVVGLDVDDIDLGP 189

Query: 178 ----------PQNIMDDQ------STLRIQGKGDKIRIVPLLPSVRKAILEYYD------ 215
                     P +  D Q      S +R+ GKG K R+VP+     +A+  Y        
Sbjct: 190 GRLAGRSSTDPTDPTDPQVAPPITSVVRLHGKGAKERLVPVGSFALRALEAYLVRGRPVL 249

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLL 274
                     +  LF  IRG  L+     + +    R  GLP S  + HTLRHSFATHLL
Sbjct: 250 AAAGRGAGPARGALFLNIRGGRLSRQSAWQVLADAARRAGLPASGVSPHTLRHSFATHLL 309

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
             G D+RS+Q +LGH  ++TTQIYT V      D + E+Y   HP
Sbjct: 310 EGGADVRSVQELLGHASVTTTQIYTLVTV----DALREVYVTAHP 350


>gi|153002474|ref|YP_001368155.1| tyrosine recombinase XerC [Shewanella baltica OS185]
 gi|151367092|gb|ABS10092.1| tyrosine recombinase XerC [Shewanella baltica OS185]
          Length = 306

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 151/308 (49%), Gaps = 33/308 (10%)

Query: 21  WLQNLE----IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           WLQ  E     ER LS  T+++Y  +  +    L     + + +  + +  + ++   +S
Sbjct: 15  WLQTFERYLSTERQLSAHTVRNYLYELNRGSDLLP----DGVHLLNVSREHWQQV---LS 67

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           K   + +  RSL   LS +K + ++L +  +   +    +   K++  LP+ ++      
Sbjct: 68  KLHRKGLSPRSLSLCLSAVKQWGEFLLREGVIELNPAKGLSAPKQAKPLPKNIDVDAISH 127

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+D         T  +  R+ A++ L Y  GLR++E  +L   ++  D   +R+ GKG+K
Sbjct: 128 LLD------IEGTDPLSLRDKAMMELFYSSGLRLAELAALNLSSVQYDLKEVRVLGKGNK 181

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLR 251
            RIVP+    R AI    +     LN   Q+P     LF   +GK L+    Q  + +  
Sbjct: 182 ERIVPV---GRLAIAALQNW----LNCRKQIPCEDNALFVTEKGKRLSHRSIQARMAKWG 234

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +   L +    H LRHSFATH+L    DLR++Q +LGH  L+TTQIYT+++ ++    + 
Sbjct: 235 QEQALSVRVHPHKLRHSFATHMLEASADLRAVQELLGHANLATTQIYTSLDFQH----LA 290

Query: 312 EIYDQTHP 319
           ++YD  HP
Sbjct: 291 KVYDNAHP 298


>gi|134101746|ref|YP_001107407.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
 gi|291003082|ref|ZP_06561055.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
 gi|133914369|emb|CAM04482.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
          Length = 313

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 142/310 (45%), Gaps = 25/310 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
             +L +L +ERG ++ TL SY  D R++   L      +  ++ + ++  T + AF+++ 
Sbjct: 16  SGYLNHLAVERGTARSTLDSYARDLRRYADHLL-----ESGVRALGEVRSTHLSAFLAEL 70

Query: 79  RT-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           R        +   S  R+L   +   ++     I        +        LP+AL    
Sbjct: 71  REGGPERPALAQSSAARALIAARGLHRFAHADGIVEVDVAREISPPSPPKRLPKALPVSD 130

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
            L L+DN       + + +  R+ A+L LLY  G RISEA+ L   ++ + + T+ + GK
Sbjct: 131 VLRLLDNT---GGEDVRGL--RDRALLELLYSSGARISEAVGLDVDDVDEAERTILLDGK 185

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLR 251
           G + R+VP+      A+  Y       L    +    +F   RG  L+       ++   
Sbjct: 186 GGRQRLVPVGRPALAALGAYMVRARPVLAGRGRGSSAVFLNSRGTRLSRQSAWNALKSAA 245

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT--NVNSKNGGDW 309
              G+    + H LRHSFATHLL  G D+R +Q +LGH  ++TTQ+YT   VN+      
Sbjct: 246 ERAGIGSGVSPHVLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLITVNT------ 299

Query: 310 MMEIYDQTHP 319
           + E++   HP
Sbjct: 300 LREVHATAHP 309


>gi|258625073|ref|ZP_05719992.1| tyrosine recombinase XerC [Vibrio mimicus VM603]
 gi|258582624|gb|EEW07454.1| tyrosine recombinase XerC [Vibrio mimicus VM603]
          Length = 310

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 152/302 (50%), Gaps = 16/302 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  E+GLS  T ++Y+        +LA     ++ + +  QL    +R  +   + Q + 
Sbjct: 24  LHSEKGLSLYTQRNYKQQLETMARYLA-----QMGLTSWPQLDAAWVRQLVVLGKRQGMK 78

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S+   LS ++SFL +L  R     +    +   +K   LP+ L+  +   L++     
Sbjct: 79  ASSISTRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRPLPKNLDVDEMAQLLEVT--- 135

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
              +   +  R+ AI+ L+YG GLR++E +S+  +++      +R+ GKG+K R V    
Sbjct: 136 ---DDDPLSIRDRAIMELMYGSGLRLAELVSIDVKDVNLRDGEIRVIGKGNKERKVWFAG 192

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             ++ + ++  L     N + +  LF    G  ++    Q+ + +  +   +    + H 
Sbjct: 193 QAQEWVGKWLKLRSQLANSD-ETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPHK 251

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ ++    + ++YDQ HP   +K
Sbjct: 252 LRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQH----LAQVYDQAHPRARKK 307

Query: 325 DK 326
           +K
Sbjct: 308 NK 309


>gi|88608752|ref|YP_506043.1| tyrosine recombinase XerD [Neorickettsia sennetsu str. Miyayama]
 gi|88600921|gb|ABD46389.1| tyrosine recombinase XerD [Neorickettsia sennetsu str. Miyayama]
          Length = 305

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/294 (30%), Positives = 152/294 (51%), Gaps = 32/294 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ + +ER  +  T+ SY  D R    FL          + ++  S   +  +I+  
Sbjct: 10  EQFLEKILVERNATLNTISSYRTDLRLLSTFLK--------KRGLKDASKENLYEYIANL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R Q++ + +++R ++  + F  +L   KI++ +   ++   KK+  LPR L +++  +L+
Sbjct: 62  RAQQLSNATIRRKIATFRQFFSFLYSEKISSTNPAQSLELPKKTLVLPRYLTKEEVFSLL 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGD 195
               L           R  AIL +LY  G+R+SE +++   +I   ++ Q  + I GKG 
Sbjct: 122 --TFLEAGQPATL---RLYAILEILYSSGMRVSELINMKVSDIRPLLNGQQHIIIVGKGR 176

Query: 196 KIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K RI+P     +KAI  L+ Y L  +  N      LF G  G+   P   QR + QL + 
Sbjct: 177 KERILPF---SKKAIQVLKLY-LTSYQSNSPW---LFPGA-GRKDRPMSRQR-LGQLLKE 227

Query: 254 LGL-----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           L L     P   + H +RHSFATHLL NG D++ +Q +LGH +++TTQIYT+++
Sbjct: 228 LALKCKIDPKRISPHVIRHSFATHLLDNGMDIKVVQDLLGHAQITTTQIYTHIS 281


>gi|167854818|ref|ZP_02477596.1| site-specific tyrosine recombinase XerC [Haemophilus parasuis
           29755]
 gi|167854116|gb|EDS25352.1| site-specific tyrosine recombinase XerC [Haemophilus parasuis
           29755]
          Length = 261

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 137/265 (51%), Gaps = 14/265 (5%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           ++  I   ++L  + +R  +S+   Q +  +S+   L  ++ FL +L K+     +  L 
Sbjct: 3   QQAEITCWQELDASTVRWILSQSHKQGLSAKSIGLRLVALRQFLAFLVKQGELKVNPTLG 62

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +++ K +  LP+ ++ +Q    +  +L   S+E   +D R+ A++ L+Y  GLR+SE   
Sbjct: 63  IKSPKANKHLPKNIDAEQ----IGQLLNIDSNEP--LDLRDVAMMELMYSSGLRLSELQG 116

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIR 234
           L   ++      +R+ GKG+K RIVP+      AI ++  +   F    N    +F   R
Sbjct: 117 LDLGDMDLPNREVRLLGKGNKERIVPIGSKALDAIEQWLAVRGQFHPKDN---AVFLNQR 173

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G  L+    Q  +++  +   L      H LRHSFATH+L    DLR++Q +LGH  LST
Sbjct: 174 GGRLSHRSIQLAMKKWGQKQALDTHLHPHKLRHSFATHMLEASQDLRAVQELLGHSSLST 233

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHP 319
           TQIYT+++ +    ++  IYD  HP
Sbjct: 234 TQIYTHLDFQ----YLARIYDLAHP 254


>gi|254451180|ref|ZP_05064617.1| tyrosine recombinase XerD [Octadecabacter antarcticus 238]
 gi|198265586|gb|EDY89856.1| tyrosine recombinase XerD [Octadecabacter antarcticus 238]
          Length = 313

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 115/232 (49%), Gaps = 17/232 (7%)

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q +   +  R LS IK   ++  +     ++  + +    +   LP+ L+  +      
Sbjct: 66  AQGLAKATRARRLSAIKQLFRFAFEEGWRVDNPAIQISGPGRDKRLPKTLSHSEV----- 120

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           + LL+ + + K    R + ++ LLY  G+R++E +SL       D   L ++GKGDK R+
Sbjct: 121 DALLNAARDAKKDPLRTTCLMELLYATGMRVTELVSLPVSAARGDPRMLLVRGKGDKERM 180

Query: 200 VPLLPSVRKAI---LEYYDLCPFDLNLNIQLP----LF--RGIRGKPLNPGVFQRYIRQL 250
           VPL P  R A    L+  D    D       P    LF  RG  G  L    F   I+ L
Sbjct: 181 VPLSPPARAATAVWLKTRDKAE-DATFKDGTPRSKFLFPSRGKLGH-LTRQSFFNLIKDL 238

Query: 251 RRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               G+  S  T HTLRH+FATHLL  G DLRSIQ++LGH  ++TT+IYT+V
Sbjct: 239 ATAGGVTRSKVTPHTLRHAFATHLLEGGADLRSIQTLLGHVDVATTEIYTHV 290


>gi|172040496|ref|YP_001800210.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109]
 gi|171851800|emb|CAQ04776.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109]
          Length = 352

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 122/258 (47%), Gaps = 31/258 (12%)

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV------ 141
           L R  S +K F K+L +R++   + +  +R  K   +LPR L   QA TL+D +      
Sbjct: 96  LSRLASSMKGFGKFLAQREVLPANPVSALRLPKGEKTLPRVLRSDQARTLLDGLKRDALE 155

Query: 142 --LLHTSHETKWIDA----------------RNSAILYLLYGCGLRISEALSLTPQNIMD 183
               H   E     A                R+  I  LL+G G+R+ EA ++  ++   
Sbjct: 156 PPAPHEGSEDAPATAQPTGNKNQRHATARRVRDWFIAELLFGTGIRVGEAEAIDVEDFDR 215

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
               LR+ GKG+K R+VP    + +A+  +      +L       L  G+RG  LN    
Sbjct: 216 ANWLLRVTGKGNKTRVVPYGGVIDEALTHWLSHR-GELAQPANPALLVGVRGGRLNQREI 274

Query: 244 QRYIRQ-LRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +R I Q +RR+  L +   + H  RHS AT +L  G DLR +Q +LGH  ++TTQIYT+V
Sbjct: 275 RRVIDQAIRRHPELAVGHMSPHGFRHSAATAVLEGGADLRVVQELLGHASMNTTQIYTHV 334

Query: 302 NSKNGGDWMMEIYDQTHP 319
               G + +   Y Q HP
Sbjct: 335 ----GAERLKAAYRQAHP 348


>gi|325002510|ref|ZP_08123622.1| site-specific tyrosine recombinase XerD [Pseudonocardia sp. P1]
          Length = 307

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 144/308 (46%), Gaps = 20/308 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L +L +ERG ++ TL+SY  D  +++  LA        I  + ++  T++  F++  
Sbjct: 9   EDYLGHLAVERGRAQNTLRSYRLDLDRYVAHLA-----DAGIDDLGRVRETDVAGFVTAL 63

Query: 79  RTQKIGDRSLKRSLSGIKSF-LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           RT   G+R L  S +      ++ L +  +   +   ++       SLP  L     +  
Sbjct: 64  RT---GERPLAASSAARALAAVRGLHRFAVLEGTVPADVAAGVAPPSLPSRLPTALTVDQ 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           VD +L     +      R+ A+L LLY  G RISE +     ++     T+ + GKGDK 
Sbjct: 121 VDQLLAGCVADGP-TGLRDRALLELLYSTGGRISEIVGADLDDLDPGARTILLHGKGDKQ 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL-NLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           RIVP+      A+  Y      DL       P L    RG  ++       +R      G
Sbjct: 180 RIVPVGRPALAAVDAYRVRARPDLAGRGTGSPALLLNARGGRMSRQSAWHALRAAAEASG 239

Query: 256 LPLSTTA----HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           L  +  A    HTLRH FATHLLS G D+R +Q +LGH  ++TTQIYT+V      D + 
Sbjct: 240 LGPAVVAAVSPHTLRHCFATHLLSGGADVRVVQELLGHASVATTQIYTHVTV----DTLR 295

Query: 312 EIYDQTHP 319
           E+Y   HP
Sbjct: 296 EVYATAHP 303


>gi|254459169|ref|ZP_05072591.1| phage integrase [Campylobacterales bacterium GD 1]
 gi|207084062|gb|EDZ61352.1| phage integrase [Campylobacterales bacterium GD 1]
          Length = 277

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 148/310 (47%), Gaps = 51/310 (16%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E + +++ + + R LSK ++++Y+ D            E+++ I  I  L    + +F+S
Sbjct: 10  ELEAFIEYISVTRALSKKSVEAYKGDLSSI--------EDELQIPLI-NLESNSVLSFLS 60

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ--- 133
           K + +    R+L R LS I +F  +  K   + E        + K   LP+ L+ K+   
Sbjct: 61  KYKNK----RTLNRKLSAINAFFDFCYKSHFSAEKTKYKFAKIPKL--LPKFLSYKEIQN 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           +L L+D           W+  R+ A++  L+  G RISE L+L  ++I D    +R   K
Sbjct: 115 SLLLIDR--------NSWLGLRDYALIIFLFASGARISECLALRREDIEDGWLHIR-HAK 165

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP----GVFQRYIRQ 249
           G+K RIVP+      AI  Y +  P +        ++   +G  L+      + Q+Y   
Sbjct: 166 GEKERIVPVAKVALDAISTYLNEKPKENEY-----VWCNYKGDALSRISAYKITQKY--- 217

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                   L+ + H LRHS+AT L+S G DLR +Q +LGH  L TTQIYT++  ++    
Sbjct: 218 --------LNVSPHVLRHSYATSLISGGADLRVVQELLGHASLLTTQIYTHIQKQD---- 265

Query: 310 MMEIYDQTHP 319
           + E  +  HP
Sbjct: 266 LKETVEVCHP 275


>gi|225388004|ref|ZP_03757728.1| hypothetical protein CLOSTASPAR_01737 [Clostridium asparagiforme
           DSM 15981]
 gi|225045926|gb|EEG56172.1| hypothetical protein CLOSTASPAR_01737 [Clostridium asparagiforme
           DSM 15981]
          Length = 283

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 145/287 (50%), Gaps = 20/287 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           LE E+  SK T+ SY+ D    L+ LA Y E K  I    +++ T + ++I     +   
Sbjct: 12  LENEKKASKNTVISYQRD----LVQLAAYLEAK-GITEAEKVTKTSLNSYILYLEKEGKA 66

Query: 85  DRSLKRSLSGIKSFLKY-LKKRKITTE-SNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
             ++ R L+ IK+F  Y L++ +I  + +  +    ++K   +   +NE        N L
Sbjct: 67  TTTISRELASIKAFFHYELREGRIRRDPAEFIKAPKVEKKAPVILTVNEV-------NAL 119

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           L    +    + R+ A+L LLY  G+R+SE  +L LT  N+     T R + K    R+V
Sbjct: 120 LCQPGDRTPKELRDKAMLELLYATGIRVSELISLKLTDVNMQVGYITCRDRSKE---RMV 176

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P   + R+A+++Y      +L        LF    G+ ++   F + I+Q     G+   
Sbjct: 177 PFGKNARQALVQYMGEARTELLKGKNSDWLFTNCNGQAMSRQGFWKLIKQYGEKAGIKSD 236

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
            T HTLRHSFA HL+ +G D+ ++Q++LGH   +TTQIYTN  + +G
Sbjct: 237 ITPHTLRHSFAAHLIRSGADIHAVQAMLGHSDTATTQIYTNYTASSG 283


>gi|307721281|ref|YP_003892421.1| tyrosine recombinase XerD subunit [Sulfurimonas autotrophica DSM
           16294]
 gi|306979374|gb|ADN09409.1| tyrosine recombinase XerD subunit [Sulfurimonas autotrophica DSM
           16294]
          Length = 275

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 152/308 (49%), Gaps = 37/308 (12%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E + +L+ + + R LSK ++++Y+ D            E+K++    + L   + +  +S
Sbjct: 4   ELEAFLEYITVTRALSKKSVEAYKSDLCAI--------EKKLS----KPLICLDTQKLMS 51

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              + K   R+L R LS + +F ++  K+  +++   L    + K   LP+ L+ +  L+
Sbjct: 52  VLFSYK-NKRTLNRKLSSVNAFFEFCYKQHFSSQKTKLKFAKIPKL--LPKFLSYEDILS 108

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
            +D +       T WI  R+ A++  LY  G RISE L L   +I +    +R   KG+K
Sbjct: 109 GLDLI-----DRTNWIGKRDYALILFLYASGTRISECLELMLGDIEEGWLHVR-HAKGEK 162

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            RIVPL    +KA+ EY     F   +N +        GK      ++  I Q  +YLG+
Sbjct: 163 ERIVPLAKVAKKAVDEYM----FASAINKEYVWCNYQGGKLSRISAYK--ITQ--KYLGV 214

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRHS+AT L+  G DLR +Q +LGH  L TTQIYT++  ++  D +    + 
Sbjct: 215 ----SPHVLRHSYATSLIRGGADLRVVQELLGHASLLTTQIYTHIQKQDLKDTV----EV 266

Query: 317 THPSITQK 324
            HP   +K
Sbjct: 267 CHPMAKEK 274


>gi|160888416|ref|ZP_02069419.1| hypothetical protein BACUNI_00833 [Bacteroides uniformis ATCC 8492]
 gi|156862093|gb|EDO55524.1| hypothetical protein BACUNI_00833 [Bacteroides uniformis ATCC 8492]
          Length = 294

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 152/307 (49%), Gaps = 25/307 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L  L  ER  SK T++ Y  D    ++ L  + EE +   T   +    +R +I+  
Sbjct: 5   DSFLDYLLHERNYSKGTVEYYRAD----ILELQRFGEEMLGDLTPLDVDAELVREWIASL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   ++ R LS ++++ K+L +R       +  +   KK   LP  L E +   L+
Sbjct: 61  MDKGLASNTINRKLSSVRTYYKFLLRRGKVAVDPLRKVTGPKKKKPLPVFLREGEMNRLL 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D++      E      R+  I+ + Y  G+R+SE + L  +++    S +++ GK +K R
Sbjct: 121 DDMDFGEGFEG----CRDHMIIEMFYATGMRLSELIGLDDKDVDFSASLVKVTGKRNKQR 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-----FRGIRGKPLNPGVFQRYI-RQLRR 252
           ++P    + +++ EY ++       N  +P+     F    GK L  G+    + R L +
Sbjct: 177 LIPFDEELGRSMREYVNV------RNEAVPVRSDAFFVRKNGKRLYRGIVACLVKRNLSK 230

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            + +    + H LRH+FAT +L+NG DL SI+ +LGH  L+TT++YT+   +     + +
Sbjct: 231 VVTVK-KRSPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEE----LKK 285

Query: 313 IYDQTHP 319
           +Y+Q HP
Sbjct: 286 VYNQAHP 292


>gi|115352658|ref|YP_774497.1| site-specific tyrosine recombinase XerD [Burkholderia ambifaria
           AMMD]
 gi|115282646|gb|ABI88163.1| tyrosine recombinase XerD [Burkholderia ambifaria AMMD]
          Length = 322

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 134/279 (48%), Gaps = 15/279 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E GL++ TL +Y  D   F  +LA      + + +  +     +  +I+ R   K  
Sbjct: 41  LWLEHGLARNTLDAYRRDLVLFSQWLA--ATHDVPLDSADE---AMLIGYIAARSDGKA- 94

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R LS  + +  +  +    +    L + + K++   P  L+E Q   L+    + 
Sbjct: 95  -TSSNRRLSVFRRYYGWAVREHHASADPTLRITSAKQAARFPSTLSEAQVEALLGAPDIG 153

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           T      +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+VP   
Sbjct: 154 TP-----LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPF-G 207

Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            V    +E Y  D  P  L       LF   RG  +    F   I++  +   +    + 
Sbjct: 208 EVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSP 267

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 268 HTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 306


>gi|238784731|ref|ZP_04628734.1| Tyrosine recombinase [Yersinia bercovieri ATCC 43970]
 gi|238714327|gb|EEQ06336.1| Tyrosine recombinase [Yersinia bercovieri ATCC 43970]
          Length = 267

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 132/264 (50%), Gaps = 12/264 (4%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           E++ +   + L   ++R+ +S+ +   +   SL   LS ++SFL +L  + +   +    
Sbjct: 9   EQMGLAHWQTLDAAQVRSLVSRSKRAGLHASSLALRLSALRSFLNWLVSQGVMQANPAKG 68

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +   +    LP+ ++  +   L+D  L         +  R+ A+L ++YG GLR+SE + 
Sbjct: 69  VSTPRSGRHLPKNIDVDEVDKLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVG 122

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           +  +++      + + GKG K R VP+  +    +  Y+ L   +L       +F    G
Sbjct: 123 MNCKHVDLASGEVWVMGKGSKERKVPIGKTAVTWL--YHWLALRELFEPQDDAIFLANTG 180

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           K ++    Q+   +     G+      H LRHSFATH+L + GDLR++Q +LGH  L+TT
Sbjct: 181 KRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTT 240

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHP 319
           QIYT+++ ++    +  +YD  HP
Sbjct: 241 QIYTHLDFQH----LATVYDAAHP 260


>gi|124006330|ref|ZP_01691164.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134]
 gi|123987987|gb|EAY27658.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134]
          Length = 299

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 149/304 (49%), Gaps = 29/304 (9%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKRRTQKI 83
           L++ER LS+ +L++Y  D ++F  +L     E   +  +  ++    I+ F+S      I
Sbjct: 14  LKLERSLSENSLEAYLHDIQKFSDYL-----EMAGLSILPAEVKADHIKKFLSYLAKLGI 68

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
              S  R LSGIK+F KYL   +       +N+   +    +P  L+ ++   L+  + L
Sbjct: 69  AASSQARILSGIKAFYKYLMLEETIERDPSVNVHTPRIDRKIPDVLSLQEIEDLLAVIDL 128

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
            T        ARN A++ +LY  GLR++E + L   N+  D   LRI GK +K R VP+ 
Sbjct: 129 STPE-----GARNRAMIEVLYSSGLRVTELIELKISNLYLDIGFLRIIGKANKERFVPIG 183

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPL--------FRGIRGKPLNPGVFQRYIRQLRRYLG 255
               + ++ Y +      N+   +P+        F   RG  ++  +    I+++     
Sbjct: 184 REAARYLISYIE------NIRSNVPVKPNNEDFVFLNRRGTKISRVMVFMIIKEVALLAD 237

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + + HT RHSFATHL+  G +++++Q +LGH  ++TT+IY  ++     D + +   
Sbjct: 238 IKKNISPHTFRHSFATHLILGGANIKAVQEMLGHENITTTEIYKRLDQ----DILRQTLL 293

Query: 316 QTHP 319
           + HP
Sbjct: 294 EFHP 297


>gi|332297603|ref|YP_004439525.1| Tyrosine recombinase xerC [Treponema brennaborense DSM 12168]
 gi|332180706|gb|AEE16394.1| Tyrosine recombinase xerC [Treponema brennaborense DSM 12168]
          Length = 308

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 131/261 (50%), Gaps = 21/261 (8%)

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           ++ T++R  I +   +K    S+ R ++ ++S   Y ++ +    +    +  +K+   L
Sbjct: 54  VTVTDLRFCIGELSRKKSAASSVNRFIAAVRSLFAYCRRFEYIKSNPATELHTVKQPRHL 113

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           PR + E +    VD +      +T     R++AI  +LY  G R+SE  SL   +   D 
Sbjct: 114 PRFMTESE----VDALCSQPERKTLLWQTRDTAIFEMLYSSGCRVSELASLRLSDFSADF 169

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNP-GVF 243
            +  + GKG K R V       KA+  Y       +  N  +  +F  ++G PL   G+ 
Sbjct: 170 RSAVVTGKGGKDRRVFFSEQAGKALAGYLRERAARIPKNRTVSAVFINMQGTPLTTRGI- 228

Query: 244 QRYIRQLRRYLGL-----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            RYI  + RY GL     P+S   H  RH+FAT +LS+G D+R +Q +LGH  +STTQ Y
Sbjct: 229 -RYI--VSRYSGLEGTDKPVS--PHAFRHTFATSMLSHGADVRVVQELLGHSSISTTQRY 283

Query: 299 TNVNSKNGGDWMMEIYDQTHP 319
           T++ ++     ++EIY++ HP
Sbjct: 284 THITTEQ----LIEIYNRAHP 300


>gi|41407506|ref|NP_960342.1| site-specific tyrosine recombinase XerD [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395859|gb|AAS03725.1| hypothetical protein MAP_1408 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 313

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 149/323 (46%), Gaps = 25/323 (7%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + +  L  + Q +L +L IERG++  TL SY  D R++   L+        I  + ++  
Sbjct: 1   MTTVALETQLQGYLDHLTIERGVAANTLSSYRRDLRRYTKHLS-----DRGISDLAKVGE 55

Query: 69  TEIRAFISKRRTQKIGD----------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
            ++  F+   R    GD           S  R+L  ++   ++L    +        +R 
Sbjct: 56  DDVSEFLVALRR---GDPDTGAAALSAVSAARALIAVRGLHRFLAAEGLAELDVARAVRP 112

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
                 LP++L   Q L L++     +  +   +  RN A+L LLY  G RISEA+ L  
Sbjct: 113 PTPGRRLPKSLTIDQVLALLEAAGGESPADGP-LTLRNRALLELLYSTGARISEAVGLDV 171

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGK 236
            ++     ++ ++GKG K R+VP+      A+  Y     ++L    +    +F  +RG 
Sbjct: 172 DDVDTQARSVLLRGKGGKQRLVPIGRPAVAALDAYLVRGRWELARRGRGTPAIFLNVRGG 231

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L+     + ++      G+    + H LRHSFATHLL  G D+R +Q +LGH  ++TTQ
Sbjct: 232 RLSRQSAWQVLQDAAERAGITSGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQ 291

Query: 297 IYTNVNSKNGGDWMMEIYDQTHP 319
           IYT V        + E++ + HP
Sbjct: 292 IYTMVTVHA----LREVWAEAHP 310


>gi|262163686|ref|ZP_06031427.1| tyrosine recombinase XerC [Vibrio mimicus VM223]
 gi|262027902|gb|EEY46566.1| tyrosine recombinase XerC [Vibrio mimicus VM223]
          Length = 310

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 152/302 (50%), Gaps = 16/302 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  E+GLS  T ++Y+        +LA     ++ + +  QL    +R  +   + Q + 
Sbjct: 24  LHSEKGLSLYTQRNYKQQLETMARYLA-----QMGLTSWPQLDAAWVRQLVVLGKRQGMK 78

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S+   LS ++SFL +L  R     +    +   +K   LP+ L+  +   L++     
Sbjct: 79  ASSISTRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRPLPKNLDVDEMAQLLEVT--- 135

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
              +   +  R+ AI+ L+YG GLR++E +S+  +++      +R+ GKG+K R V    
Sbjct: 136 ---DDDPLSIRDRAIMELMYGSGLRLAELVSIDMKDVNLRDGEIRVIGKGNKERKVWFAG 192

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             ++ + ++  L     N + +  LF    G  ++    Q+ + +  +   +    + H 
Sbjct: 193 QAQEWVGKWLKLRSQLANSD-ETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPHK 251

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ ++    + ++YDQ HP   +K
Sbjct: 252 LRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQH----LAQVYDQAHPRARKK 307

Query: 325 DK 326
           +K
Sbjct: 308 NK 309


>gi|113866150|ref|YP_724639.1| site-specific tyrosine recombinase XerC [Ralstonia eutropha H16]
 gi|113524926|emb|CAJ91271.1| Site-specific recombinase XerC/Integrase [Ralstonia eutropha H16]
          Length = 359

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 154/333 (46%), Gaps = 40/333 (12%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           ++ P      L+    +WL+     R L++ TL SY  D R      A Y      +   
Sbjct: 18  SDGPPPAPEPLVTRYLDWLRG---SRKLAEHTLTSYSRDLRVLQGHAARYAPGVALLA-- 72

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKS 122
             L    IR F ++     +   S+ R+LS  + F ++  +       N ++ +R  +  
Sbjct: 73  --LQTHHIRNFAARLHGAGLVGTSIARTLSAWRGFFQWAARHGHGVTVNPVDGVRAPRSG 130

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQ 179
           ++LP+AL+ + A+ LV       +H     DA   R+ A+  L Y  GLR+SE + L  +
Sbjct: 131 HALPKALSVEHAVALV-------AHPAG-TDAQALRDQAVHELFYSSGLRLSELVQLDLR 182

Query: 180 NIMDDQ-----------STLRIQGKGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNL 223
               D            + + + GKG + R VP+     +A+  +       L P  L  
Sbjct: 183 YADADGYRSSGWLDLAGAEVTVTGKGSRQRSVPVGSKAIEALRAWLAVRDTLLRPGALPE 242

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
           +    LF G RG+ L+    Q  ++Q     G+P     H LRHSFATH+L + GDLR++
Sbjct: 243 DAHA-LFLGPRGRRLSMRTVQLRLKQQALRAGVPADVHPHMLRHSFATHVLQSSGDLRAV 301

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           Q +LGH  +STTQ+YT ++ ++    + ++YD+
Sbjct: 302 QEMLGHASISTTQVYTALDFQH----LAKVYDK 330


>gi|114049118|ref|YP_739668.1| tyrosine recombinase XerC [Shewanella sp. MR-7]
 gi|123131002|sp|Q0HQJ4|XERC_SHESR RecName: Full=Tyrosine recombinase xerC
 gi|113890560|gb|ABI44611.1| tyrosine recombinase XerC [Shewanella sp. MR-7]
          Length = 299

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 135/253 (53%), Gaps = 13/253 (5%)

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++K   + +  RSL   LS IK + ++L +  +   +    +   K++  LP+ ++    
Sbjct: 59  LAKLHRKGLSPRSLSLWLSAIKQWGEFLLRSGVIELNPAKGLSAPKQAKPLPKNID---- 114

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           +  + ++L    ++   +  R+ AI+ L Y  GLR++E  +L   ++  DQ  +R+ GKG
Sbjct: 115 VDSISHLLAIEGNDP--LTLRDKAIMELFYSSGLRLAELAALDLSSVQYDQHEVRVLGKG 172

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +K RIVP+     +AI  +   C   ++      LF   +GK L+    Q  + +  +  
Sbjct: 173 NKERIVPVGRYAIEAISAWLK-CRKQISCEDN-ALFVTEKGKRLSHRSIQARMSKWGQEQ 230

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            L +    H LRHSFATH+L +  DLR++Q +LGH  LSTTQIYT+++ ++    + ++Y
Sbjct: 231 ALSMRVHPHKLRHSFATHMLESSADLRAVQELLGHENLSTTQIYTSLDFQH----LAKVY 286

Query: 315 DQTHP-SITQKDK 326
           D  HP +  Q+DK
Sbjct: 287 DNAHPRAKKQQDK 299


>gi|317477767|ref|ZP_07936960.1| tyrosine recombinase XerC [Bacteroides sp. 4_1_36]
 gi|316906112|gb|EFV27873.1| tyrosine recombinase XerC [Bacteroides sp. 4_1_36]
          Length = 294

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 152/307 (49%), Gaps = 25/307 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L  L  ER  SK T++ Y  D    ++ L  + EE +   T   +    +R +I+  
Sbjct: 5   DSFLDYLLHERNYSKGTVEYYRAD----ILELQRFGEEMLGDLTPLDVDAELVREWIASL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   ++ R LS ++++ K+L +R       +  +   KK   LP  L E +   L+
Sbjct: 61  MGKGLASNTINRKLSSVRTYYKFLLRRGKVAVDPLRKVTGPKKKKPLPVFLREGEMNRLL 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D++      E      R+  I+ + Y  G+R+SE + L  +++    S +++ GK +K R
Sbjct: 121 DDMDFGEGFEG----CRDHMIIEMFYATGMRLSELIGLDDKDVDFSASLVKVTGKRNKQR 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-----FRGIRGKPLNPGVFQRYI-RQLRR 252
           ++P    + +++ EY ++       N  +P+     F    GK L  G+    + R L +
Sbjct: 177 LIPFDEELGRSMREYVNV------RNEAVPVRSDAFFVRKNGKRLYRGIVACLVKRNLSK 230

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            + +    + H LRH+FAT +L+NG DL SI+ +LGH  L+TT++YT+   +     + +
Sbjct: 231 VVTVK-KRSPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEE----LKK 285

Query: 313 IYDQTHP 319
           +Y+Q HP
Sbjct: 286 VYNQAHP 292


>gi|269926944|ref|YP_003323567.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269790604|gb|ACZ42745.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 310

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 156/307 (50%), Gaps = 16/307 (5%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           F+ L   + ++ +LE ER  S  T  +Y+ D  QF  +L    + K  I +   ++ ++I
Sbjct: 2   FDGLSSVEEFISHLESERHFSNNTTAAYKNDILQFHDWL----QGKDHINSWAAVTSSDI 57

Query: 72  RAFI---SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           + ++      + +     +  R ++ IKSF ++L  + +  ++   ++ + +     P+A
Sbjct: 58  QDYLLYLKGNQDRAYAPSTQARKMAAIKSFFQFLVAKSVVDQNPASDLISPRVQKYWPKA 117

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           ++ ++      N+LL  + +++  +  R+ A+L +LY  GLR+SE +SL   +I  D+S 
Sbjct: 118 ISVQEV-----NMLLAAASDSETPEGIRDRAMLEVLYRTGLRVSELVSLNVDDINLDESH 172

Query: 188 LRIQGKGDKIRIVPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           L+  G+G K R VPL  P+V    L      P  +    +  LF   RG+ L    F   
Sbjct: 173 LKCIGRG-KTRKVPLSQPAVDVLKLYLERSRPLLVRGQDEQALFVNHRGQRLTRQGFWLI 231

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           ++      G+    T HTLRHSFA H++  G DLR +Q  LGH  ++TTQ+Y  + S + 
Sbjct: 232 LKAYASEAGIK-GITPHTLRHSFAAHMIDGGIDLRQVQEWLGHASITTTQVYRQIKSNSH 290

Query: 307 GDWMMEI 313
            + +++I
Sbjct: 291 SEKIIDI 297


>gi|167644692|ref|YP_001682355.1| integrase family protein [Caulobacter sp. K31]
 gi|167347122|gb|ABZ69857.1| integrase family protein [Caulobacter sp. K31]
          Length = 308

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 140/311 (45%), Gaps = 30/311 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ + +ER  ++ TL +YE D     +FLA   +       +   S   I A+ +    
Sbjct: 12  FLEMMAVERAAARNTLTAYEKDLADARLFLASRGD-------LDGASAEAIEAYFADLGA 64

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   +  R  S ++ F +++       +     +   K    LP+ L+    L L+  
Sbjct: 65  RGLSPATAARRRSALRQFYRFVLGEGWRDDDPSRRVEAPKAGRPLPKVLSRDAVLRLIAA 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                  +      R + ++ LLY  GLRISE L+L    +  D + L ++GKG K R+ 
Sbjct: 125 AAAKDGAQG----LRLACMIELLYASGLRISELLNLPLAALARDPAFLMVKGKGGKERLA 180

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-LNPG------VFQRYIRQLRRY 253
           PL  + R A+  Y +  P  L          G++  P L P       +  R + QL   
Sbjct: 181 PLNDAARTAVKAYLEARPQFLPKGAP---NGGVKDSPWLFPSRAKSGRLTARRVSQLLED 237

Query: 254 LGLPL-----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
             +       + + H LRH+FATHLL  G DLR IQ++LGH  ++TTQIYT+V     GD
Sbjct: 238 AAIAAGIDRQTVSPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHV----AGD 293

Query: 309 WMMEIYDQTHP 319
            + E+    HP
Sbjct: 294 HLAEVVKSKHP 304


>gi|150390286|ref|YP_001320335.1| tyrosine recombinase XerD [Alkaliphilus metalliredigens QYMF]
 gi|149950148|gb|ABR48676.1| tyrosine recombinase XerD [Alkaliphilus metalliredigens QYMF]
          Length = 294

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/307 (30%), Positives = 157/307 (51%), Gaps = 28/307 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N++  L+ E+ LS  TL+SY+ D +QF  +LA        I  I + + T I  ++   +
Sbjct: 7   NFIIYLKNEKHLSTNTLESYKRDVKQFTSYLA-----GSDIHDIEETTKTTIITYLFYLQ 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYL---KKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            +     ++ RSL+ ++SF  YL   KK  I    N+ + + +KK    P  +   + + 
Sbjct: 62  KEGRAASTISRSLASLRSFYHYLLLHKKVDIDPTFNLESPKMVKK----PPNILTLEEVE 117

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+    L+T+ +      R+ A+L LLY  G+R++E +SL  +++  +   +R      K
Sbjct: 118 LLLQQPLNTTPK----GIRDKAMLELLYATGIRVTELISLNLEDVNVNLGYIRC-CNNTK 172

Query: 197 IRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
            R++P+    L +++K I  Y D    D   N +  LF    G  L    F + I+   +
Sbjct: 173 ERVIPIGTLSLIALQKYINYYRDAFTKD---NEEKSLFLNYHGGRLTRQGFWKIIKVYTK 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +  S T HTLRHSFATHL+ NG DL+S+Q +LGH  +STTQ+Y  +      D    
Sbjct: 230 QAAIEKSITPHTLRHSFATHLIENGADLKSVQEMLGHSDISTTQVYAQLTKHKIKD---- 285

Query: 313 IYDQTHP 319
           +Y++THP
Sbjct: 286 VYNKTHP 292


>gi|254508806|ref|ZP_05120917.1| tyrosine recombinase XerC [Vibrio parahaemolyticus 16]
 gi|219548263|gb|EED25277.1| tyrosine recombinase XerC [Vibrio parahaemolyticus 16]
          Length = 310

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 154/330 (46%), Gaps = 48/330 (14%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTR---QFLIFLAFYTEEKITIQTIRQLSYTE 70
           L K  + + + L  E+GLS  T ++Y+       Q L+ L      ++    +RQL+   
Sbjct: 12  LQKPLERFYEYLRSEKGLSLHTQRNYKQQLETMAQHLVQLGLKDWSQVDSAWVRQLASKG 71

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +R          +   SL   LS ++SF  +L  R   + +    +   +K   LP+ L+
Sbjct: 72  MR--------DGMKASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLD 123

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             +   L++       +E   +  R+ A++ ++YG GLR++E +S+  +++      +R+
Sbjct: 124 VDEVGQLLE------VNEDDPLSIRDRAMMEMMYGAGLRLAELVSINVKDVSFFSGEIRV 177

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF------- 243
            GKGDK R VP      + + ++  +              RG   K   P +F       
Sbjct: 178 VGKGDKERKVPFSGMASEWVGKWMKV--------------RGTLAKSDEPALFVSKLGVR 223

Query: 244 ------QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
                 Q+ + +  +   +    + H LRHSFATH+L +  +LR++Q +LGH  +STTQI
Sbjct: 224 ISHRNVQKRMAEWGQKQAVASHISPHKLRHSFATHVLESSNNLRAVQELLGHENISTTQI 283

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
           YT+++ ++    + E+YDQ HP   ++  K
Sbjct: 284 YTHLDFQH----LAEVYDQAHPRAKKRSNK 309


>gi|190572731|ref|YP_001970576.1| site-specific tyrosine recombinase XerD [Stenotrophomonas
           maltophilia K279a]
 gi|190010653|emb|CAQ44262.1| putative integrase/recombinase [Stenotrophomonas maltophilia K279a]
          Length = 325

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/325 (29%), Positives = 155/325 (47%), Gaps = 25/325 (7%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
             LPE+ + + ++  Q +L  +  E GL++ TL SY  D    L  LA + + +     +
Sbjct: 15  QQLPELRADDSMRI-QRFLDAIWAENGLARATLDSYRRD----LEGLARWMDGRDG--GL 67

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
             +    +  +++ R       RS  R LS +++F     +R    E     +   K   
Sbjct: 68  AGIERPGLFDYLAWRTRHGWSPRSNARLLSALRAFFADGVRRGERGEDPSALLDPPKLPR 127

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            LP+AL E+Q    +D +L     ++  +  R+ A+L L+Y  GLR+SE + L    +  
Sbjct: 128 LLPKALAERQ----IDALLAVPDIDSP-LGLRDRAMLELMYAAGLRVSELVLLPATAVNL 182

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLN-------LNIQLPLFRGIRG 235
            Q  LR+ GKG K R+VPL    +  +  Y     P  +         + Q PLF     
Sbjct: 183 RQGVLRVTGKGSKERLVPLGEESQHWLERYLQASRPLLVGKGKVQALADGQTPLFVEPTL 242

Query: 236 KPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
             L    F   +++  +  G+ P   + H LRHSFATHLL+ G DLR++Q +LGH  LST
Sbjct: 243 HALTRQAFWHLVKRHAQVAGIDPARISPHGLRHSFATHLLNRGADLRALQMLLGHSSLST 302

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHP 319
           TQIYT V  ++    + +++ + HP
Sbjct: 303 TQIYTLVAREH----LQKLHARHHP 323


>gi|93005052|ref|YP_579489.1| phage integrase [Psychrobacter cryohalolentis K5]
 gi|92392730|gb|ABE74005.1| tyrosine recombinase XerC subunit [Psychrobacter cryohalolentis K5]
          Length = 349

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 149/323 (46%), Gaps = 25/323 (7%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT--- 69
           ELL     WL  L + R  S  TL +Y     Q  +FL             ++L++T   
Sbjct: 41  ELLAPVHRWLNVLSV-RNHSPHTLTAYFAGLNQLALFLRG-----------KRLTWTRCD 88

Query: 70  --EIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
             ++   IS+R  + K+   S+++ LS I+ F  +L +  +   +     +  +    LP
Sbjct: 89  KRQLAQHISQRLDEDKLSLASVQQELSAIRHFYGWLIEEDLARINPTTGYQLKRSPRPLP 148

Query: 127 RALNEKQALTLVDNVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
              +      L+D  +  T  + + W+  R+ A+  LLY  GLR+ E ++L   ++    
Sbjct: 149 SIADVDLLTQLLDQEIPDTPEQARLWL--RDKAMFELLYSSGLRVGELVALDIVDVDLAD 206

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             +R+ GKG+K R+VPL      AI  Y       +    Q        G  L+    Q+
Sbjct: 207 LRVRVTGKGNKTRLVPLGIKAADAIRRYLPHRNLWVEQMDQALFISEKLGTRLSTRAVQQ 266

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            ++      G+  +   H LRH FA+H+LS  GDLR++Q +LGH  +STTQIYT+V+   
Sbjct: 267 RLKVAATRAGIAQNMYPHLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTHVDFAK 326

Query: 306 GGDWMMEIYDQTHPSITQKDKKN 328
               + ++YD+ HP  T   K +
Sbjct: 327 ----LTQVYDRAHPRATHVSKDS 345


>gi|218264364|ref|ZP_03478221.1| hypothetical protein PRABACTJOHN_03917 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222062|gb|EEC94712.1| hypothetical protein PRABACTJOHN_03917 [Parabacteroides johnsonii
           DSM 18315]
          Length = 302

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 138/282 (48%), Gaps = 8/282 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L  L  ER  S+ T+ +Y  D +QF  F+    E+K  I    ++    +R +I   
Sbjct: 6   DSFLDCLRYERNYSEYTIGAYSKDLQQFEDFVK---EKKEGIFVPEEVDADIVRNWIISL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
              KI   S+ R LS +KSF K+L K+   + + +  +   K    LP  + EK    L+
Sbjct: 63  LDNKISPVSVNRKLSSLKSFFKFLMKQGFVSVNPLRFVTGPKTKKPLPTFVKEKDMEELL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D        +  +   R+  IL +LY  G+R SE + L   +I  D   +++ GK +K R
Sbjct: 123 DG----DGFDEDFEGVRDRLILEMLYDTGVRRSELVGLQDIDIDYDAMLIKVTGKRNKQR 178

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++P    ++  +L Y ++   ++         R   G+ L+ G+    +++    +    
Sbjct: 179 LIPFAERLKNLMLAYTEVRNREVGAGSGWFFVRK-NGEQLSTGILYTIVKKKLSDIPTLA 237

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             + H LRHSFAT +L+NG +L +++ +LGH  L++T IYT+
Sbjct: 238 KCSPHVLRHSFATSMLNNGAELNAVKELLGHSSLASTSIYTH 279


>gi|227325794|ref|ZP_03829818.1| site-specific tyrosine recombinase XerC [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 311

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 147/302 (48%), Gaps = 25/302 (8%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L++ER LS LT  SY    RQ    +   +   +     R+L  + +R+ +S+ +  
Sbjct: 24  LRYLKVERQLSPLTQTSY---LRQLSAVITILSAAGVA--DWRRLDASGVRSVVSRSKRD 78

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +   SL   LS ++SFL ++  R +   +    +   +    LP+ ++  +      N 
Sbjct: 79  GLHSSSLALRLSALRSFLDWMVSRGVLVANPAKGVSTPRAGRPLPKNMDVDET-----NR 133

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           LL  + +   +  R+  +L ++YG GLR++E + +  Q+I      + + GKG K R +P
Sbjct: 134 LLEINLDDP-LAVRDRTMLEVMYGAGLRLAELVGMDYQHIDLASGEIWVMGKGSKERKLP 192

Query: 202 LLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +  +    +  +  L     P D  +      F   +G+ ++    Q+   +     G+ 
Sbjct: 193 IGKTAVTWLERWLALRELFGPQDDAV------FISNQGRRISMRNVQKRFAEWGIKQGIN 246

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRHSFATH+L + GDLR++Q +LGH  L+TTQIYT+++ ++    +  +YD  
Sbjct: 247 SHVHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----LASVYDAA 302

Query: 318 HP 319
           HP
Sbjct: 303 HP 304


>gi|148284235|ref|YP_001248325.1| site-specific tyrosine recombinase XerD [Orientia tsutsugamushi
           str. Boryong]
 gi|146739674|emb|CAM79467.1| site-specific recombinase [Orientia tsutsugamushi str. Boryong]
          Length = 309

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 158/318 (49%), Gaps = 26/318 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ +  E+ +S  +L +Y+ D + F  FL     + I +Q+   ++  +I +FI   
Sbjct: 5   EQFLETVLAEKNVSANSLLAYKRDLQDFSDFL-----KSIQLQSSLAVTTKDIDSFIQHL 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            ++ +  RS+ R +S ++ +  +L    +     + N+   + S  LP+ L+ K+   L+
Sbjct: 60  LSKNLSFRSIARKISTLRQYYLFLLTENVVQPDLVTNIEVPRYSTKLPKILSIKEIKMLI 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------G 192
           D     T+ E      R  A++ LLY  GLR+SE +S+   ++  D +T +I+      G
Sbjct: 120 DYCFKDTTAE----GIRTLAMICLLYSTGLRVSELVSVKITDLKFDHNTGKIKNHFVILG 175

Query: 193 KGDKIRIV---PLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYI 247
           KG+K R+V    L   V    L Y D   PF  N    + LF    +   +    F   +
Sbjct: 176 KGNKERLVIMNDLTGDVISRYLPYRDFFSPFK-NAKNSVYLFPSKAKQGYMTRQNFAILL 234

Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +      GL P + + H LRHSFA+HLL  G DL+ IQ +LGH  +S+TQIYT+V     
Sbjct: 235 KNAAINAGLSPDNVSPHILRHSFASHLLEGGADLKVIQELLGHVDISSTQIYTHVQP--- 291

Query: 307 GDWMMEIYDQTHPSITQK 324
            + +  + ++ HP+  +K
Sbjct: 292 -ERLKHVIEKYHPASLKK 308


>gi|77163532|ref|YP_342058.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
 gi|254436437|ref|ZP_05049942.1| site-specific recombinase, phage integrase family protein
           [Nitrosococcus oceani AFC27]
 gi|76881846|gb|ABA56528.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
 gi|207087971|gb|EDZ65245.1| site-specific recombinase, phage integrase family protein
           [Nitrosococcus oceani AFC27]
          Length = 310

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 148/308 (48%), Gaps = 25/308 (8%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           + +  + R+++L +L   +G S+ T  +Y  D   +  +LA   ++        Q ++ +
Sbjct: 5   AVDFWQARKDFLAHLHYAKGYSQGTCYAYNSDLGIWGRWLAEVGKDWC------QATHAD 58

Query: 71  IRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
              F++ + R +      + R  S + SF K+  K  +     I      K+   +P  L
Sbjct: 59  TEKFVAWQMRERGAKAHIVARRSSCLGSFYKWAMKNALVESDPIYLADKPKRPYRIPVWL 118

Query: 130 N--EKQAL--------TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
              E+QAL         L +N+   T    K +  R   +  L+   GLRISEAL++  +
Sbjct: 119 EKEEQQALQEATQRIDNLPENIFGRTQEHIKAVRRRYDVLFGLILNSGLRISEALAVKVR 178

Query: 180 NI--MDD-QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
           ++  M+    ++RI GKG++ R+VPL  +  +    +      D  +  + P      GK
Sbjct: 179 DVRVMNGIAKSVRIIGKGNRERLVPLPEAFGQVFGAWLQGREGDDFVFAKAP-----GGK 233

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           P  P   + Y+R+L    G+    T H LRH++AT LL +G +L  IQ++LGH  LSTTQ
Sbjct: 234 PPGPHAARAYLRRLIERAGIDKPVTPHKLRHTYATRLLESGAELVDIQALLGHVDLSTTQ 293

Query: 297 IYTNVNSK 304
           IYT+V+ +
Sbjct: 294 IYTHVSEE 301


>gi|37678273|ref|NP_932882.1| site-specific tyrosine recombinase XerC [Vibrio vulnificus YJ016]
 gi|37197012|dbj|BAC92853.1| site-specific recombinase XerC [Vibrio vulnificus YJ016]
          Length = 322

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 152/304 (50%), Gaps = 16/304 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  E+GLS  T ++Y    +Q L  +A +    + ++   Q+    +R    K   + + 
Sbjct: 30  LRAEKGLSLHTQRNY----KQQLETMAEHLHS-MGLKAWPQVDAGWVRQLAGKGMREGMK 84

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S+   LS ++SF  +L  R I T +    +   +K   LP+ L+  +      N LL 
Sbjct: 85  ASSIATRLSSLRSFFDFLILRGILTANPAKGVSAPRKKRPLPKNLDVDEV-----NQLLE 139

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            + E   +  R+ AI+ L+YG GLR++E + +  +++      +R+ GKG+K R VP   
Sbjct: 140 VN-EDDPLAIRDRAIMELMYGAGLRLAELVDIDVRDVHLRSGEIRVIGKGNKERKVPFAG 198

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
              + + ++  +    L    +  LF    G  ++    Q+ + +  +   +    T H 
Sbjct: 199 MAVEWVGKWLKVRS-GLADPSEPALFVSKLGTRISHRSVQKRMAEWGQKQAVASHITPHK 257

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ ++    + ++YDQ HP   +K
Sbjct: 258 LRHSFATHILESSNNLRAVQELLGHENISTTQIYTHLDFQH----LADVYDQAHPRARKK 313

Query: 325 DKKN 328
             ++
Sbjct: 314 SSQH 317


>gi|238789383|ref|ZP_04633169.1| Tyrosine recombinase [Yersinia frederiksenii ATCC 33641]
 gi|238722526|gb|EEQ14180.1| Tyrosine recombinase [Yersinia frederiksenii ATCC 33641]
          Length = 263

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 133/264 (50%), Gaps = 12/264 (4%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           E++ +   + L   ++R+ +S+ +   +   SL   LS ++SFL +L  + +   +    
Sbjct: 5   EQMGLAHWQTLDAAQVRSLVSRSKRAGLHSSSLALRLSALRSFLDWLVSQGVLQANPAKG 64

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +   +    LP+ ++  +   L+D  L         +  R+ A+L ++YG GLR+SE + 
Sbjct: 65  ISTPRSGRHLPKNIDVDEVDKLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVG 118

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           +  +++      + + GKG K R VP+  +     LE++ L   +L       +F    G
Sbjct: 119 MNCKHVDLASGEVWVMGKGSKERKVPIGKTA-VTWLEHW-LALRELFEPQDDAIFLANTG 176

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           K ++    Q+   +     G+      H LRHSFATH+L + GDLR++Q +LGH  L+TT
Sbjct: 177 KRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTT 236

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHP 319
           QIYT+++ ++    +  +YD  HP
Sbjct: 237 QIYTHLDFQH----LATVYDAAHP 256


>gi|260905256|ref|ZP_05913578.1| tyrosine recombinase XerD [Brevibacterium linens BL2]
          Length = 315

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 152/321 (47%), Gaps = 24/321 (7%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LPE+ +  L +  + +L +L  ERGLS+ ++ +Y  D  ++  +L         +  + +
Sbjct: 9   LPELPA-SLARAFETYLNSLRFERGLSRNSIDAYARDLARYGTWL-----NGQGMSHLGE 62

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +  T + AF      + +  R+  R+L  ++ F  +     +        +   ++   L
Sbjct: 63  VERTHVEAFALHLLDENLAPRTRARALVAVRRFHGFALGEGLAATDPASEVSPPQEGLRL 122

Query: 126 PRALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           P+AL+       +D++  +L T+   +    R +A+L LLY  G RISEA+ +   ++  
Sbjct: 123 PKALS-------LDDIEAMLATTGGEEPAQIRAAALLELLYATGARISEAVGVDLDDLDL 175

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPL 238
           + S +R+ GKG K RIVP       A+  +       +    +       LF   RG  L
Sbjct: 176 ETSLVRLYGKGGKERIVPFGSHAATALGAWVSRTRPSMAAKARSSAPAGALFLNARGTRL 235

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +     + ++      GL    + HT RHSFATHLL  G D+R +Q +LGH  ++TTQIY
Sbjct: 236 SRQTAWQIVKDAGELAGLEAEVSPHTFRHSFATHLLEGGADIRVVQELLGHASVTTTQIY 295

Query: 299 TNVNSKNGGDWMMEIYDQTHP 319
           T V+ +     + E+Y  +HP
Sbjct: 296 TKVSEET----LREVYATSHP 312


>gi|327395064|dbj|BAK12486.1| tyrosine recombinase XerD [Pantoea ananatis AJ13355]
          Length = 220

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/230 (34%), Positives = 120/230 (52%), Gaps = 17/230 (7%)

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           ++   +YL + K+ T+     +   K    LP+ L+E Q    VD  LL        ++ 
Sbjct: 1   MRRLFQYLYREKMRTDDPSAMLAAPKLPQRLPKDLSEAQ----VDR-LLQAPDVNVPLEL 55

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI--LE 212
           R+ A+L LLY  GLR+SE + LT  ++   Q  +R+ GKG+K R+VPL     +A+  LE
Sbjct: 56  RDKAMLELLYATGLRVSELVGLTLNDVSLRQGVVRVIGKGNKERLVPL---GEEAVHWLE 112

Query: 213 YY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSF 269
           YY     P+ LN       F   R + +    F   I+      G+     + H LRH+F
Sbjct: 113 YYMEHGRPWLLNGQTLDVFFPSNRAQQMTRQTFWHRIKHYAMLAGIDSEKLSPHVLRHAF 172

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           ATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  ++ Q HP
Sbjct: 173 ATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRLLHQQHHP 218


>gi|313159128|gb|EFR58503.1| tyrosine recombinase XerD [Alistipes sp. HGB5]
          Length = 298

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 140/281 (49%), Gaps = 12/281 (4%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +++E+ LS+ T++SY  D RQF  F+    +  +  + +         A++  R  +K  
Sbjct: 19  IKLEKRLSQNTVESYMRDLRQFAHFI--LRQYDVAPRKVEGTMIERYMAWLYDRGREKT- 75

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R L GI+SF  +L        S    +   K    LP  L   +  +++  V + 
Sbjct: 76  --SQARCLCGIRSFFNFLLVNDQIETSPAEFVDTPKFGRPLPDILTTDEIDSIIATVDMR 133

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           +   TK +  R+SA+L +LY CGLR+SE  SL   ++   +  +R+ GKG+K R+VP+  
Sbjct: 134 S---TKGL--RDSAMLEVLYSCGLRVSELTSLRLSDLFFGEGYIRVIGKGNKQRLVPISN 188

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           + R  I  Y  L       + +  +F   RG  L   +    +++     G+    + HT
Sbjct: 189 TARDKIQRY--LEERRSARSGEETVFLNNRGGQLTRVMVFTILKRAVERAGIDKHISPHT 246

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            RHSFATHLL  G  +R +Q +LGH  + TT+IYT+++S +
Sbjct: 247 FRHSFATHLLEGGASIRQVQEMLGHESILTTEIYTHLDSDH 287


>gi|27364549|ref|NP_760077.1| site-specific tyrosine recombinase XerC [Vibrio vulnificus CMCP6]
 gi|320154951|ref|YP_004187330.1| tyrosine recombinase XerC [Vibrio vulnificus MO6-24/O]
 gi|34222789|sp|Q7ZAI9|XERC_VIBVU RecName: Full=Tyrosine recombinase xerC
 gi|71153412|sp|Q7MQB9|XERC_VIBVY RecName: Full=Tyrosine recombinase xerC
 gi|27360668|gb|AAO09604.1| tyrosine recombinase XerC [Vibrio vulnificus CMCP6]
 gi|319930263|gb|ADV85127.1| tyrosine recombinase XerC [Vibrio vulnificus MO6-24/O]
          Length = 316

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 152/304 (50%), Gaps = 16/304 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  E+GLS  T ++Y    +Q L  +A +    + ++   Q+    +R    K   + + 
Sbjct: 24  LRAEKGLSLHTQRNY----KQQLETMAEHLH-SMGLKAWPQVDAGWVRQLAGKGMREGMK 78

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S+   LS ++SF  +L  R I T +    +   +K   LP+ L+  +      N LL 
Sbjct: 79  ASSIATRLSSLRSFFDFLILRGILTANPAKGVSAPRKKRPLPKNLDVDEV-----NQLLE 133

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            + E   +  R+ AI+ L+YG GLR++E + +  +++      +R+ GKG+K R VP   
Sbjct: 134 VN-EDDPLAIRDRAIMELMYGAGLRLAELVDIDVRDVHLRSGEIRVIGKGNKERKVPFAG 192

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
              + + ++  +    L    +  LF    G  ++    Q+ + +  +   +    T H 
Sbjct: 193 MAVEWVGKWLKVRS-GLADPSEPALFVSKLGTRISHRSVQKRMAEWGQKQAVASHITPHK 251

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ ++    + ++YDQ HP   +K
Sbjct: 252 LRHSFATHILESSNNLRAVQELLGHENISTTQIYTHLDFQH----LADVYDQAHPRARKK 307

Query: 325 DKKN 328
             ++
Sbjct: 308 SSQH 311


>gi|254230112|ref|ZP_04923508.1| tyrosine recombinase XerC [Vibrio sp. Ex25]
 gi|151937357|gb|EDN56219.1| tyrosine recombinase XerC [Vibrio sp. Ex25]
          Length = 266

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 136/269 (50%), Gaps = 11/269 (4%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           ++ ++   Q+    +R    K   + +   SL   LS ++SF  +L  R   + +    +
Sbjct: 7   EMGLKDWSQVDAGWVRQLAGKGMREGMKASSLATRLSSLRSFFDFLILRGEMSANPAKGV 66

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              +K   LP+ L+  +   L++       +E   +  R+ A++ L+YG GLR++E +S+
Sbjct: 67  SAPRKKRPLPKNLDVDEVSQLLE------VNEDDPLAVRDRAMMELMYGAGLRLAELVSV 120

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
             +++      LR+ GKGDK R VP      + + ++  +   DL    +  LF    G 
Sbjct: 121 DVRDVQLRSGELRVIGKGDKERKVPFSGMATEWVAKWLKVRG-DLAAPGEPALFVSKLGT 179

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            ++    Q+ + +  +   +    + H LRHSFATH+L +  +LR++Q +LGH  +STTQ
Sbjct: 180 RISHRSVQKRMAEWGQKQSVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQ 239

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           IYT+++ ++    + + YDQ HP   +K+
Sbjct: 240 IYTHLDFQH----LAQAYDQAHPRARKKN 264


>gi|149177761|ref|ZP_01856361.1| integrase/recombinase [Planctomyces maris DSM 8797]
 gi|148843411|gb|EDL57774.1| integrase/recombinase [Planctomyces maris DSM 8797]
          Length = 316

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 148/305 (48%), Gaps = 20/305 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  LE E G++  T+ +Y  D  QFL    +Y  +K    +   L++  +  ++   
Sbjct: 26  EPFLHYLEAECGMAVNTVSAYRSDIVQFL---DWYRMQKPVPLSEVDLAF--LSGYLQHL 80

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNLKKSNSLPRALNEKQALT 136
             +K+   ++ R L  +K F +YL    +  ES  ++LN   L K   LP+ L+ ++   
Sbjct: 81  NRRKLAATTVSRHLVTLKLFFRYLVLEGVLAESVADLLNSPKLWKY--LPKVLSPEKV-- 136

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
              N LL           R+ AIL ++Y  G R++E ++L   ++   +   R  GKG+K
Sbjct: 137 ---NQLLAAPCRQDRYPLRDRAILAMMYATGCRVTEIVTLPLNSVKLTEGYARCVGKGNK 193

Query: 197 IRIVPLLPSVRKAILEY--YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            R+V L P    A+  Y  ++          +  LF    GK L+  +    +++    +
Sbjct: 194 ERMVSLNPVAVAAVEAYLRHERPVLTRRNTTEQALFLNRGGKQLSRVMVWNIVKKNAARV 253

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G     + HTLRHSFATH+++ G ++R++Q +LGH  + TTQIYT+V+       +  ++
Sbjct: 254 GCSKEVSPHTLRHSFATHMMAGGAEIRALQELLGHANIRTTQIYTHVDHSR----LKAVH 309

Query: 315 DQTHP 319
              HP
Sbjct: 310 QMYHP 314


>gi|220912288|ref|YP_002487597.1| tyrosine recombinase XerD [Arthrobacter chlorophenolicus A6]
 gi|219859166|gb|ACL39508.1| tyrosine recombinase XerD [Arthrobacter chlorophenolicus A6]
          Length = 362

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 141/334 (42%), Gaps = 68/334 (20%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI---- 75
           ++LQ++ +ERGL+  TL +Y  D  ++  +LA         Q    ++   +  F+    
Sbjct: 59  DYLQHMGVERGLAANTLAAYRRDLARYSRYLA-----GTGCQQPGDITRHHVTGFVRALS 113

Query: 76  -SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
                   +G RS  R++  ++   K+      T       +        LP+A+     
Sbjct: 114 DGSDGGTALGVRSAARTVVAVRGLHKFWALEGHTASDPASEVHPPMAGKRLPKAIT---- 169

Query: 135 LTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DD----Q 185
              VD V  +L  +        R+ A+L  LY  G RISEA+ L   +I    DD     
Sbjct: 170 ---VDEVTRILEAAGTDTATGLRDRALLEFLYSTGARISEAVGLDVDDISLAGDDTEQGP 226

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL------- 238
           + +R+ GKG K R+VPL     +A+  Y                   +RG+PL       
Sbjct: 227 AIVRLFGKGSKERLVPLGSYGARALEAYL------------------VRGRPLLAAKGKG 268

Query: 239 NPGVF-----QRYIRQ--------LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
            P +F      R  RQ              +    + HTLRHSFATHLL  G D+R +Q 
Sbjct: 269 TPALFLNARGGRISRQSAWTILKVAAEKANITRDVSPHTLRHSFATHLLEGGADVRVVQE 328

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           +LGH  ++TTQ+YT V +    D + E+Y   HP
Sbjct: 329 LLGHASVTTTQVYTLVTA----DTLREVYAAAHP 358


>gi|325285449|ref|YP_004261239.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489]
 gi|324320903|gb|ADY28368.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489]
          Length = 296

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 147/303 (48%), Gaps = 16/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + ++  L +E+  S  T+ +Y+ D  +F  F     +    + +I  + Y  +R +I   
Sbjct: 4   EAFVSYLSLEKKYSTHTVTAYKKDISEFTEFCGVNYQ----LTSIDDVPYAFVRNWIVVL 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLPRALNEKQALT 136
            +++I +RS+ R ++ +K++ K+L+K      + +   + LK S    +P +  E     
Sbjct: 60  VSKEISNRSINRKIASLKAYYKFLQKIGRVVVNPLAKHKALKISKKIEIPFSFEE----- 114

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
            V+  L     E  +   R+  I+ LLY  G+R  E ++L  +N+     T+++ GK +K
Sbjct: 115 -VEAALNEVDFEAGFEGERDRLIIGLLYATGVRRIELVNLKLKNVDVKAKTIKVLGKRNK 173

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+VPL P V   +  Y +       +N +   F    G  +   +  R I +    +  
Sbjct: 174 ERVVPLAPFVCPWVYSYLENREALPVINDEAYFFLLKSGDKVYESLVYRIINRYFSKVSS 233

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL+ G DL S++ +LGH  L++TQ+YT+    N    + +++  
Sbjct: 234 KQKNSPHILRHTFATHLLNEGADLNSVKELLGHSSLASTQVYTH----NSIAELKKVHLA 289

Query: 317 THP 319
            HP
Sbjct: 290 AHP 292


>gi|148272560|ref|YP_001222121.1| integrase/recombinase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830490|emb|CAN01425.1| integrase/recombinase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 298

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 138/297 (46%), Gaps = 11/297 (3%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           +++ ERG +  T+++Y  D R     LA +   +  + T   L    +R ++ +    ++
Sbjct: 10  SMDRERGSAAHTVRAYSADLRD----LAAHAGRQ-GVTTSAALDLEVLRDWLWRGSQARL 64

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
              +L R  + ++ F  +L +         + ++  +  + LPR L  +Q ++ +   L 
Sbjct: 65  APATLARRSAAVRGFGAWLLRTGRVEADPAVRLKAPRAGSHLPRVLAREQ-MSALLARLA 123

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
             + E      R+ A++ LLY   LR+SE   L   ++   + T+R+ GKGD+ R+VP  
Sbjct: 124 ARAAEDDPAALRDLAVIELLYASALRVSELTGLELGDVDASRLTVRVVGKGDRERVVPFG 183

Query: 204 PSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
               +A+  Y     P  ++      LF G RG  L        +  L   +        
Sbjct: 184 VPAAEALDAYVARGRPGLVSPRTGTALFLGARGGRLGSRAVYGLVASLLADIPGSGPQGP 243

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           H LRH+ ATHLL  G DLR++Q +LGH  L TTQIYT+V+ +     +   Y+  HP
Sbjct: 244 HALRHTAATHLLDGGADLRTVQEMLGHASLGTTQIYTHVSIER----LQRSYEGAHP 296


>gi|172061520|ref|YP_001809172.1| site-specific tyrosine recombinase XerD [Burkholderia ambifaria
           MC40-6]
 gi|171994037|gb|ACB64956.1| tyrosine recombinase XerD [Burkholderia ambifaria MC40-6]
          Length = 322

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 131/279 (46%), Gaps = 15/279 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E GL++ TL +Y  D   F  +LA   +  +            +  +I+ R   K  
Sbjct: 41  LWLEHGLARNTLDAYRRDLVLFSQWLAAMHDAPLD-----SADEAMLIGYIAARSDGKA- 94

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R LS  + +  +  +         L + + K++   P  L+E Q   L+    + 
Sbjct: 95  -TSSNRRLSVFRRYYGWAVREHRANADPTLRITSAKQAARFPSTLSEAQVEALLGAPDVG 153

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           T      +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+VP   
Sbjct: 154 TP-----LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPF-G 207

Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            V    +E Y  D  P  L       LF   RG  +    F   I++  +   +    + 
Sbjct: 208 EVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSP 267

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 268 HTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 306


>gi|37528455|ref|NP_931800.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36787893|emb|CAE17010.1| integrase/recombinase [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 303

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 157/310 (50%), Gaps = 23/310 (7%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +LL+  + +L+ L +ER LS +T+  Y    R+ L  LA    E + +   + L   ++R
Sbjct: 7   QLLEPIEAFLRYLRVERRLSPVTITHY----RRHLATLAEMVLE-MGVSQWQDLDPAKVR 61

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
             +++ R   +   +L   LS ++SFL +   + I  E ++    N  K+ S P      
Sbjct: 62  MLVTRSRRAGLQSANLALRLSSLRSFLDW---QVIQGEISV----NPSKTVSTPGTKRHL 114

Query: 133 QALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
                VD V  LL+ +     +  R+  +L ++YG GLR+SE + L  Q++  +   + +
Sbjct: 115 PKNIDVDEVNQLLNINFNDP-LSVRDRTMLEVMYGAGLRLSELVGLDCQHLDLESGEVWV 173

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
            GKG K R VPL  +  + +  +  +   F+   N    +F   RG+ ++    Q+   Q
Sbjct: 174 SGKGSKERKVPLGHTAVEWLNRWLAMRELFEPEDN---AVFVSKRGRRISTRNVQKRFAQ 230

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+      H LRHSFATH+L + GDLR++Q +LGH  LS+TQIYT+++ ++    
Sbjct: 231 WGIRQGMSSHIHPHKLRHSFATHILESSGDLRAVQELLGHASLSSTQIYTHLDFQH---- 286

Query: 310 MMEIYDQTHP 319
           + ++YD  HP
Sbjct: 287 LTKVYDVAHP 296


>gi|254440057|ref|ZP_05053551.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198255503|gb|EDY79817.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 315

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 112/222 (50%), Gaps = 17/222 (7%)

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R LS IK   ++  +     ++  + +    +   LP+ L+  +      + LL+ + + 
Sbjct: 76  RRLSAIKQLFRFAFEEGWRVDNPAIQVSGPGRDKRLPKTLSHDEV-----DALLNAARDA 130

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           K    R + ++ LLY  G+R++E +SL       D   L ++GKGDK R+VPL P  R A
Sbjct: 131 KKEPLRTTCLMELLYATGMRVTELVSLPVSAARGDPRMLLVRGKGDKERMVPLSPPARAA 190

Query: 210 I---LEYYDLCPFDLNLNIQLP----LF--RGIRGKPLNPGVFQRYIRQLRRYLGLP-LS 259
               L+  D    D       P    LF  RG  G  L    F   I+ L    G+P   
Sbjct: 191 TAIWLKTRDRTE-DEAFKDGTPRSKFLFPSRGKLGH-LTRQSFFNLIKDLALAGGVPPFK 248

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT+RH+FATHLL  G DLRSIQ++LGH  ++TT+IYT+V
Sbjct: 249 ATPHTMRHAFATHLLEGGADLRSIQTLLGHADVATTEIYTHV 290


>gi|89901430|ref|YP_523901.1| tyrosine recombinase XerD [Rhodoferax ferrireducens T118]
 gi|89346167|gb|ABD70370.1| tyrosine recombinase XerD subunit [Rhodoferax ferrireducens T118]
          Length = 306

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/306 (28%), Positives = 146/306 (47%), Gaps = 25/306 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  L +E GLSK TL +Y  D   +  +L    + K    T+      ++  + + + +
Sbjct: 17  FIDALWLEEGLSKNTLAAYRRDLTLYGAWLQ--PQHKALPATLEH----DLNGYFAAQHS 70

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                 +  R L+  K + ++  +  + +    L ++  K++  +P+ L+E Q       
Sbjct: 71  ATKASTA-NRRLTVFKRYFRWALREHLISADPTLKLQAAKQALRVPKTLSEFQV-----E 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL    E   +  R+  +L L+Y  GLR+SE ++L   N+    + LR+ GKG+K R+V
Sbjct: 125 ALLAAPDEQTPLGVRDRTMLELMYASGLRVSELVTLKVFNVSLSDNVLRVFGKGNKERLV 184

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPG------VFQRYIRQLRRY 253
           P        I  Y      +L    Q   LF   RG    PG      +F   +++    
Sbjct: 185 PFGEVASLWIKRYLAQARPELLAGKQTEDLFVTHRGA--TPGTAMSRVMFWMIVKKYALS 242

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    + HTLRH+FATHLL++G DLR++Q +LGH  +STT IYT+V  +     +  +
Sbjct: 243 AGITAPLSPHTLRHAFATHLLNHGVDLRAVQMLLGHVDISTTTIYTHVARER----LKVL 298

Query: 314 YDQTHP 319
           + Q HP
Sbjct: 299 HAQHHP 304


>gi|297559217|ref|YP_003678191.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296843665|gb|ADH65685.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 289

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 144/309 (46%), Gaps = 32/309 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++  +L  E G S  T++ Y  D R  L  L    EE+   +++R L    +R ++S+ 
Sbjct: 3   ESFAAHLSGELGRSPHTVRGYLADLRSLLAHL----EERG--RSVRDLDVDLVRGWLSRA 56

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R       ++ R ++ +++F ++L +  +        + +  +  SLP  L+E+QA    
Sbjct: 57  RDAGASRATVARRVAAVRAFTRFLHREGVLAADPGPRLASPAQQRSLPTVLDERQA---- 112

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
               L    E      R  A++  LY  G+R++E  +L   ++  ++ T+R+ GKG K R
Sbjct: 113 -AAALAGETEGTPTGLRRRAVVETLYATGVRVAELCALDLADVDRERDTVRVLGKGAKER 171

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR------ 251
            VP+      A+  +     P          LF G RG  L        +RQ R      
Sbjct: 172 TVPVGGPALDALDAWLSGGRPEMAGATSGSALFLGARGGRLG-------VRQAREDVHAH 224

Query: 252 -RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            R +G    +  H LRHS ATHLL+ G DLRS+Q  LGH    +TQIYT+V+ +     +
Sbjct: 225 LRAVGA--DSAPHGLRHSAATHLLNGGADLRSVQEFLGHASPRSTQIYTHVSVER----L 278

Query: 311 MEIYDQTHP 319
            + Y + HP
Sbjct: 279 RDTYRRAHP 287


>gi|162147966|ref|YP_001602427.1| tyrosine recombinase xerD [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542583|ref|YP_002274812.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786543|emb|CAP56125.1| putative tyrosine recombinase xerD [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530260|gb|ACI50197.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 304

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 137/292 (46%), Gaps = 26/292 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L  ERG +  TL++Y  D   F          +   +++       +R ++   
Sbjct: 6   EAFLEMLAAERGAAANTLKAYGRDLDDF------AAHARQAGRSLHDADSALLRDYMGSL 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +  R+  R LS +K F  +L +  +  ++    +   +   +LPR L E +   L+
Sbjct: 60  ARAGLSPRTQARRLSCLKQFHLFLAREGVRQDNPAELLDTPRLPATLPRFLTEDEVDALL 119

Query: 139 DNVLL--HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
              +         +W+ AR  A L +LY  GLRISE L+L  + +  D   L ++GKG +
Sbjct: 120 AACVPPPDGGAARRWLVAR--AALEMLYASGLRISELLALPRRGLGRDAQMLMVRGKGGR 177

Query: 197 IRIVPL--LPSVRKAILEYYD---LCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQL 250
            R+VPL          L  +D     P+         LF G    +PL    F R +  +
Sbjct: 178 ERLVPLSAAARAAAEALIAHDGPRRSPY---------LFPGRAPDRPLTRQGFDRILHDV 228

Query: 251 RRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               GL P   + H LRHSFATH+L+ G DLR++Q +LGH  ++TTQIYT+V
Sbjct: 229 ALRAGLDPARLSPHVLRHSFATHMLARGADLRALQVLLGHADIATTQIYTHV 280


>gi|118617318|ref|YP_905650.1| site-specific tyrosine recombinase XerD [Mycobacterium ulcerans
           Agy99]
 gi|118569428|gb|ABL04179.1| integrase/recombinase, XerD [Mycobacterium ulcerans Agy99]
          Length = 313

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 142/313 (45%), Gaps = 19/313 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF-ISK 77
           Q +L +L IERG++  TL SY  D R++   L     E   I  + ++   ++  F ++ 
Sbjct: 11  QGYLDHLAIERGVAANTLSSYRRDLRRYSKHL-----EDRGITDLAKVGEDDVSEFLVAL 65

Query: 78  RRTQK------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           RR         +   S  R+L  ++   ++     +        +R       LP++L  
Sbjct: 66  RRGDPESGVLGLSAVSAARALIAVRGLHRFAAAEGLAALDVARAVRPPTPGRRLPKSLTI 125

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            + L L++        +   +  RN A+L LLY  G RISEA+ L   +I     T+ +Q
Sbjct: 126 DEVLALLEGAGGDNPADGP-LTLRNRALLELLYSTGSRISEAVGLDVDDIDTQARTVLLQ 184

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQ 249
           GKG K R+VP+     +A+  Y      +L    +    +F   RG  L+     + ++ 
Sbjct: 185 GKGGKQRLVPVGRPAVQALDAYLVRGRPELARRGRGTPAIFLNARGGRLSRQSAWQVLQD 244

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                 +    + H LRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V        
Sbjct: 245 AAERADITSGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHA---- 300

Query: 310 MMEIYDQTHPSIT 322
           + E++   HP  T
Sbjct: 301 LREVWAGAHPRAT 313


>gi|317132368|ref|YP_004091682.1| integrase family protein [Ethanoligenens harbinense YUAN-3]
 gi|315470347|gb|ADU26951.1| integrase family protein [Ethanoligenens harbinense YUAN-3]
          Length = 294

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 142/296 (47%), Gaps = 16/296 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  ++ +S  TLQSY+ D +QF+ +L     E         ++  E+  ++   R +   
Sbjct: 12  LRDQKSVSASTLQSYQRDLKQFVQYLQQRGNEDPA-----DVTAAELEMYLDVLRGKGRS 66

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           + ++ R  + ++ F +YL    I +E+  L +   +    LP  L   +      ++L  
Sbjct: 67  EATISRFTASVRGFFQYLLLEGIISENPALLLHVERGKRCLPDILTSGEV-----DLLFA 121

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
                 +   R+ A+L LLY  G+R+SE ++L   +I     TL  +G  +K R +P+  
Sbjct: 122 QPVCNDFKGYRDKAMLELLYATGIRVSELIALDVGDINLGLCTLFCRGP-EKNRSIPIYN 180

Query: 205 SVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              ++I  Y D     L  L+ +  LF    G+ L+   F + ++      G+    T H
Sbjct: 181 EAVQSISLYLDNARSTLRMLHGEKALFVNAGGRRLSRQGFWKIVKSYAGQAGIQKRITPH 240

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           TLRHSFA HLL NG DL+SIQ +LGH  +S+TQIY  +      +    +Y++ HP
Sbjct: 241 TLRHSFAAHLLENGADLKSIQEMLGHSDISSTQIYEQIVQ----NRCRLVYNKCHP 292


>gi|149191484|ref|ZP_01869733.1| site-specific tyrosine recombinase XerC [Vibrio shilonii AK1]
 gi|148834672|gb|EDL51660.1| site-specific tyrosine recombinase XerC [Vibrio shilonii AK1]
          Length = 313

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 154/312 (49%), Gaps = 16/312 (5%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           +++   L K  + + + L  E+GLS  T ++Y    RQ L  +  +  E + I    Q+ 
Sbjct: 4   QVLPSGLQKPLERFYEYLRSEKGLSLHTQRNY----RQQLETMGMHLHE-MGIGAWTQVD 58

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
              +R    K   + +   S+   LS ++SF  +L  R   T +    +   +K   LP+
Sbjct: 59  AGWVRQLAGKGMREGMKASSIATRLSSLRSFFDFLILRGELTANPAKGVSAPRKQRPLPK 118

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L+  +      N LL    E   +  R+ A++ ++YG GLR++E +S+  +++      
Sbjct: 119 NLDVDEV-----NQLLEVD-EDDPLAVRDRAMMEMMYGAGLRLAEMVSIDVKHLNLSSGE 172

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           LR+ GKG+K R VP      +   ++  +   +L    ++ LF    G  ++    Q+ +
Sbjct: 173 LRVIGKGNKERKVPFSGYATEWAKKWLKVRG-ELAKPGEVALFVSKLGTRISHRSVQKRM 231

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +  +   L    + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ ++  
Sbjct: 232 AEWGQKQSLASHVSPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQH-- 289

Query: 308 DWMMEIYDQTHP 319
             + + YDQ HP
Sbjct: 290 --LAQAYDQAHP 299


>gi|315186399|gb|EFU20159.1| integrase family protein [Spirochaeta thermophila DSM 6578]
          Length = 299

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 145/294 (49%), Gaps = 35/294 (11%)

Query: 24  NLEIERGLSKLTLQSYE--CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           +L  E G S+LT ++Y   C+      F A+     + ++T+ + +  E   FI   R +
Sbjct: 15  HLVAELGRSRLTEETYLPLCER-----FCAWLECRGLEVETVSRRTCEE---FIVDERGE 66

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
               R++ + +S ++SF ++L    +  ++ +  M   + S +LPR L E++   L++ V
Sbjct: 67  GKETRTIAKEMSALRSFFRFLVLEGVRPDNPLEEMDAPRISRTLPRVLEEEEVEILLEAV 126

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
                  T     R+  +L +LY CGLR+SEA  L  Q+I   +  ++++GKG+K R+VP
Sbjct: 127 -----DTTPPEGMRDRCLLEVLYSCGLRVSEACGLDLQDIFLSEGFVKVRGKGEKERLVP 181

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF-QRYIRQLRR---YLGLP 257
                   +  Y         L+   P+    R       VF  R+ R+L R   ++ L 
Sbjct: 182 FGKEAGHWMRRY---------LSEARPVLAARRPGSREQAVFLNRWGRRLSRKGAWIRLK 232

Query: 258 LSTTA-------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
               A       HT RH+ ATHLL  G +LR +Q  LGH  +STTQIYT+V+++
Sbjct: 233 RLVAASGVDAKLHTFRHTCATHLLHGGANLREVQEFLGHADISTTQIYTHVDAR 286


>gi|315121780|ref|YP_004062269.1| site-specific tyrosine recombinase XerD [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495182|gb|ADR51781.1| site-specific tyrosine recombinase XerD [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 318

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 145/285 (50%), Gaps = 10/285 (3%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ +  ER  S  TL SY+ D  +  +FL            + + S   + A+++    
Sbjct: 18  FLEMMSSERAASVNTLTSYKSDLEEVQLFLD------DDDLLLSKASSDNLIAYLNHLSQ 71

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +K+   S +R +S I+ F  +L    +  ++    ++  KK+++LP+ L++     L+  
Sbjct: 72  RKLKASSQRRKISAIRQFYNFLCCEGLRKDNPSETLQFPKKNHTLPKTLHKNAIADLLKQ 131

Query: 141 VLLHTSHET--KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             + +   +  +W   R   ++ LLY  G+R+SE ++L+   +  ++  + I+GKG++ R
Sbjct: 132 AKIESEDPSPGQWKRIRMFLLIELLYSTGMRVSELVTLSSHTLNLEERIMIIKGKGNRER 191

Query: 199 IVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
            V   PS   A+  Y  +C   ++  N         +   L+  VF R +++L     + 
Sbjct: 192 FVIFSPSSLCALQMYKKMCSTMEMTKNSPWLFPSSTKTGHLSRQVFARDLKELASRASIQ 251

Query: 258 L-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             + + H +RH+FA+HLL  G DLR+IQ +LGH  +STTQIYT++
Sbjct: 252 TKNISPHIIRHAFASHLLEGGADLRTIQILLGHIDISTTQIYTHL 296


>gi|238028460|ref|YP_002912691.1| site-specific tyrosine recombinase XerD [Burkholderia glumae BGR1]
 gi|237877654|gb|ACR29987.1| Tyrosine recombinase XerD [Burkholderia glumae BGR1]
          Length = 341

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 86/279 (30%), Positives = 132/279 (47%), Gaps = 15/279 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E GLS+ TL +Y  D   F  +LA  T    +I  + +   T    +I+ R   K  
Sbjct: 60  LWLEHGLSQNTLDAYRRDLTLFAQWLA--TVHGASIDAVDEAMLT---GYIAARSDGKA- 113

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R LS  + +  +  +         L + + K+    P  L+E Q   L+    + 
Sbjct: 114 -TSSNRRLSVFRRYYGWALREHRAALDPTLRLLSAKQPARFPATLSEAQVEALLAAPEVG 172

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           T+     +  R+  +L L+Y  GLR+SE + L    +  +   +R+ GKG K R+VP   
Sbjct: 173 TA-----LGLRDRTMLELMYASGLRVSELVMLKTVEVGLNDGVVRVMGKGSKERLVPF-G 226

Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            V    +E Y  +  P  L       LF   RG+ +    F   I++      +    + 
Sbjct: 227 EVAHGWIERYLREARPALLGARTSDALFVTARGEGMTRQQFWNIIKRHAMRAEIRAHLSP 286

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 287 HTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHV 325


>gi|261855921|ref|YP_003263204.1| integrase family protein [Halothiobacillus neapolitanus c2]
 gi|261836390|gb|ACX96157.1| integrase family protein [Halothiobacillus neapolitanus c2]
          Length = 329

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 127/255 (49%), Gaps = 9/255 (3%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           Q+    +R +++  R   + +RS+ R  S  +  L+Y +K  I   ++   +++ K +  
Sbjct: 59  QIDDRRLRGYLAHCRESGLDNRSIARKSSATRWLLRYWQKIHIACPASPDALKSPKAAKK 118

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP A   +    L+D  ++        +  R+  +  L+Y  GLR++E + L   +I   
Sbjct: 119 LPDAPAIETMNQLLDQPMVEDE-----LLIRDRCMFELIYSSGLRVAELVRLDVHDIDRS 173

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           +   R+ GK +K R+VP+       +  +  +    L    +  LF   RG+ L     Q
Sbjct: 174 EGIARVTGKREKTRLVPVGGKALDRVALWLPIRKTLLKDTTEPALFLNRRGQRLTIRSVQ 233

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             + +L +   L  +   H LRH+FATH+L + GDLR++Q +LGH  LSTTQIYT+++ +
Sbjct: 234 MRLNRLAQQTHLGQTLHPHQLRHAFATHVLESSGDLRAVQEMLGHESLSTTQIYTHLDFQ 293

Query: 305 NGGDWMMEIYDQTHP 319
                + ++Y+  HP
Sbjct: 294 R----LAQVYESAHP 304


>gi|219871693|ref|YP_002476068.1| putative site-specific tyrosine recombinase XerC [Haemophilus
           parasuis SH0165]
 gi|219691897|gb|ACL33120.1| possible site-specific tyrosine recombinase XerC [Haemophilus
           parasuis SH0165]
          Length = 261

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 134/257 (52%), Gaps = 14/257 (5%)

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           ++L  + +R  +S+   Q +  +S+   L  ++ FL +L K+     +  L +++ K + 
Sbjct: 11  QELDASTVRWILSQSHKQGLSAKSIGLRLVALRQFLAFLVKQGELKVNPTLGIKSPKANK 70

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            LP+ ++ +Q    +  +L   S+E   +D R+ A++ L+Y  GLR+SE   L   ++  
Sbjct: 71  HLPKNIDAEQ----IGQLLNIDSNEP--LDLRDVAMMELMYSSGLRLSELQGLDLGDMDL 124

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGV 242
               +R+ GKG+K RIVP+      AI ++  +   F    N    +F   RG  L+   
Sbjct: 125 PNREVRLLGKGNKERIVPIGSKALDAIEQWLAVRGQFHPKDN---AVFLNQRGGRLSHRS 181

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            Q  +++  +   L      H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT+++
Sbjct: 182 IQLAMKKWGQKQALDTHLHPHKLRHSFATHMLEASQDLRAVQELLGHSSLSTTQIYTHLD 241

Query: 303 SKNGGDWMMEIYDQTHP 319
            +    ++  IYD  HP
Sbjct: 242 FQ----YLARIYDLAHP 254


>gi|227114723|ref|ZP_03828379.1| site-specific tyrosine recombinase XerC [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 311

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 145/302 (48%), Gaps = 25/302 (8%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L++ER LS LT  SY    RQ    +   +   +     R L  + +R+ +S+ +  
Sbjct: 24  LRYLKVERQLSPLTQTSY---LRQLSAVITILSAAGVA--DWRNLDASGVRSVVSRSKRD 78

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +   SL   LS ++SFL ++  R +   +    +   +    LP+ ++  +      N 
Sbjct: 79  GLHSSSLALRLSALRSFLDWMVSRGVLVANPAKGVSAPRAGRPLPKNMDVDET-----NR 133

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           LL    +   +  R+  +L ++YG GLR++E + +  Q+I      + + GKG K R +P
Sbjct: 134 LLEIDLDDP-LAVRDRTMLEVMYGAGLRLAELVGMDYQHIDLASGEVWVMGKGSKERKLP 192

Query: 202 LLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +  +    +  +  L     P D  +      F   +G+ ++    Q+   +     G+ 
Sbjct: 193 IGKTAVTWLERWMALRELFGPQDDAV------FISNQGRRISMRNVQKRFAEWGIKQGIN 246

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRHSFATH+L + GDLR++Q +LGH  L+TTQIYT+++ ++    +  +YD  
Sbjct: 247 SHVHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----LASVYDAA 302

Query: 318 HP 319
           HP
Sbjct: 303 HP 304


>gi|154508823|ref|ZP_02044465.1| hypothetical protein ACTODO_01333 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798457|gb|EDN80877.1| hypothetical protein ACTODO_01333 [Actinomyces odontolyticus ATCC
           17982]
          Length = 315

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 146/316 (46%), Gaps = 22/316 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEIRAFIS 76
           ++W+  L +E+G S  T+ +Y  D  ++   +   +  K+ ++ I  R +    +R    
Sbjct: 9   RDWVDYLRVEKGASAHTVSNYRRDVARYAFDM--KSRGKVNVEDISPRDIEDYTMRLASG 66

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           +         S+ R+ + I+   KY              +   ++   LP+AL+      
Sbjct: 67  RVTGTPAAASSVARASAAIRGLHKYALTEGAVGTDAAAQLHAPRQGRHLPKALS------ 120

Query: 137 LVDNV--LLHTSH-ETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MD-DQSTLRIQ 191
            VD V  LL  +H +   I  R++A+L LLY  G R+SEA+SL+  ++ +D D   +R+ 
Sbjct: 121 -VDEVGRLLDAAHADDSPIGLRDAALLELLYATGARVSEAVSLSADDLDLDGDVPVVRLF 179

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQ 249
           GKG K RIVP+      A+  Y       L    +     F   RG  L+       IR+
Sbjct: 180 GKGRKERIVPVGSFAVDALYAYRVRARPALAARGRGSTAFFLNSRGGALSRQSAWTAIRR 239

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                 L    + HTLRHSFATHLL  G  +R +Q +LGH  ++TTQIYT V +      
Sbjct: 240 AAEAAQLGERVSPHTLRHSFATHLLEGGASVREVQELLGHASVATTQIYTQVTAA----V 295

Query: 310 MMEIYDQTHPSITQKD 325
           + E++  +HP     D
Sbjct: 296 LREVFTLSHPRARGTD 311


>gi|225021106|ref|ZP_03710298.1| hypothetical protein CORMATOL_01118 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946106|gb|EEG27315.1| hypothetical protein CORMATOL_01118 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 331

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 112/204 (54%), Gaps = 14/204 (6%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K   SLP  +    A TL+  V    + E +++  R++A+L LLY  G+R+SE   +   
Sbjct: 136 KSGRSLPTVVTPTAAETLM--VSSQATTEPEYL--RDTAMLELLYATGIRVSELCGIDLA 191

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRG 235
           ++   ++T+++ GKG+K R+VP       A+  + D     L LN + P    LF G RG
Sbjct: 192 DVNYSRNTVKVTGKGNKQRVVPFGNPAASALKAWRDHGRPHL-LNPKKPAHNALFLGARG 250

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             ++P + +  + +  + LG+      H+LRHS ATH+L  G DLR +Q +LGH  L TT
Sbjct: 251 GRIDPRMVRTVVARAGKQLGVD-GLGPHSLRHSAATHMLDGGADLRVVQELLGHSSLQTT 309

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHP 319
           QIYT+V++      + + Y+Q HP
Sbjct: 310 QIYTHVSTTR----LKQAYNQAHP 329


>gi|325104990|ref|YP_004274644.1| integrase family protein [Pedobacter saltans DSM 12145]
 gi|324973838|gb|ADY52822.1| integrase family protein [Pedobacter saltans DSM 12145]
          Length = 293

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 153/308 (49%), Gaps = 27/308 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +   +  E+  S  T+ SY+ D  Q+  FL+    +      I   ++ ++R ++   
Sbjct: 4   ERFFNYISFEKKYSAHTVLSYQTDINQYQDFLSVIEAD------ILSATHRDVRNWVVSL 57

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
              +   R++ R +S +K+   +L + ++   + +  +   K + +LP  L  ++   L+
Sbjct: 58  MDDQKSSRTVNRKISALKTLYSFLLREELIEVNPMQKVLAPKIAKTLPVFLETEKLNALL 117

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D        E  +   R+  IL  L+G G+R+SE L L  +++     T+++ GKG+K R
Sbjct: 118 D---YEGIFEEGFEGKRDKLILEFLFGTGVRLSELLGLREKDVDFGNKTVKVLGKGNKER 174

Query: 199 IVP----LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           I+P    L+ S+R  +L+      ++ N +  +   +G++  P      +   R ++RYL
Sbjct: 175 IIPMSESLICSIRDYLLKKKSGVIYN-NSDALIVTNKGLQAYP------EFIYRTVKRYL 227

Query: 255 GLPLST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            +  S    + H LRH+FAT LL+ G D+ +I+ +LGH  L+ TQ+YT+    N  + + 
Sbjct: 228 SIISSKEKKSPHVLRHTFATALLNAGADINAIKELLGHASLAATQVYTH----NSIERIK 283

Query: 312 EIYDQTHP 319
            IY Q HP
Sbjct: 284 TIYKQAHP 291


>gi|188532374|ref|YP_001906171.1| site-specific tyrosine recombinase XerC [Erwinia tasmaniensis
           Et1/99]
 gi|188027416|emb|CAO95263.1| Tyrosine recombinase XerC [Erwinia tasmaniensis Et1/99]
          Length = 302

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 148/307 (48%), Gaps = 19/307 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL   + +L+ L++ER LS LT  +Y    RQ    +    E K+      +L    +R+
Sbjct: 7   LLAAVEGFLRFLKVERQLSPLTQINYR---RQLSALIVLLDELKVVDWA--RLDAALVRS 61

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             ++     +   SL   LS ++SFL +L  + +   +    +   +    LP+ ++  +
Sbjct: 62  LAARSTRSGLKPASLALRLSALRSFLDWLMSQGMIKANPAKGVATPRAGRHLPKNIDVDE 121

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                 N LL        +  R+ A+L ++YG GLR+SE + +   ++      + + GK
Sbjct: 122 V-----NRLLEIDLNDP-LAVRDRAMLEVMYGAGLRLSELVGIDLGHLDLASGEVWVVGK 175

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K R +P+  +    I  + ++   FD   N    LF   +GK ++    Q+   +   
Sbjct: 176 GSKERRLPMGRTAVHWIENWLEMRELFDPEDN---ALFLSNKGKRISTRNVQKRFAEWGV 232

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+      H LRHSFATH+L + GDLR++Q +LGH  L+TTQIYT+++ ++    +  
Sbjct: 233 KQGISSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----LAS 288

Query: 313 IYDQTHP 319
           +YD  HP
Sbjct: 289 VYDAAHP 295


>gi|167625815|ref|YP_001676109.1| tyrosine recombinase XerC [Shewanella halifaxensis HAW-EB4]
 gi|167355837|gb|ABZ78450.1| tyrosine recombinase XerC [Shewanella halifaxensis HAW-EB4]
          Length = 303

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 158/324 (48%), Gaps = 49/324 (15%)

Query: 13  ELLKERQNWLQNLE----IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS- 67
           E L +   WL + E     ER +S  T+++Y  + ++          EK+  +T   LS 
Sbjct: 4   EALSDNSVWLSSFERYLRTERQVSAYTVRNYLFELKRV---------EKLFSETESWLSQ 54

Query: 68  -YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
            +  ++A ++K   + +  RSL  +LS +K F ++L + +    +  +++   K+   LP
Sbjct: 55  QHDSLQAILAKLHRKGLSPRSLSLTLSSLKQFYEFLLREQQLKINPAISLTAPKQGKPLP 114

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDA------RNSAILYLLYGCGLRISEALSLTPQN 180
           + ++      L+D            IDA      R+ AI+ L Y  GLR+ E  +L   +
Sbjct: 115 KNMDVDSVSHLLD------------IDANDPLSFRDKAIMELFYSSGLRLGELAALNAAD 162

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRG 235
           I   ++ +++ GKG K RIVP+      AI ++ ++     C  D        LF   +G
Sbjct: 163 IQFSEAQVKVLGKGSKERIVPIGKLALAAITQWLEIKRDIACEGD-------ALFVTAKG 215

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           K L     Q  + +  +   + +    H LRHSFATH+L +  DLR++Q +LGH  LSTT
Sbjct: 216 KRLAHRSIQARLAKWGQEQAIGMKVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTT 275

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHP 319
           Q+YT+++ ++    + ++YD  HP
Sbjct: 276 QVYTSLDFQH----LAKVYDGAHP 295


>gi|296115017|ref|ZP_06833660.1| integrase/recombinase XerD [Gluconacetobacter hansenii ATCC 23769]
 gi|295978435|gb|EFG85170.1| integrase/recombinase XerD [Gluconacetobacter hansenii ATCC 23769]
          Length = 304

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 148/308 (48%), Gaps = 28/308 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L  ERG +  TL++Y  D       LA      +   ++ Q S  ++ A++S    
Sbjct: 9   FLEMLAAERGAALNTLKAYRRDLDDLGTALA------VEGASLPQASARQLGAYLSGLAQ 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYL--KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +  R+  R LS ++ +  +L  + R+    +++L    L    +LPR L+E     L+
Sbjct: 63  AGLSARTQARRLSCLRQYYLFLVREGRRPDNPASMLEAPRL--GATLPRFLSEGDVDALL 120

Query: 139 DNVLLHT---SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
              +      +HE + +    +A L +LY  GLRISE LSL    +      L ++GKG 
Sbjct: 121 AACVARADAGAHEVRRMLVARTA-LEILYASGLRISELLSLPRAALERTTGMLLVRGKGG 179

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV---FQRYIRQLRR 252
           + R+VPL    R A  E   L   D  L     LF G    PL       F R +  +  
Sbjct: 180 RERMVPLSSRARDAADE---LMRMDRPLRSMF-LFPGR--NPLRAMTRQGFDRILHDVAL 233

Query: 253 YLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             GL P   + H LRHSFATHLLS+G DLR++Q +LGH  ++TTQIYT+V ++     + 
Sbjct: 234 KAGLDPQRLSPHVLRHSFATHLLSHGADLRALQVLLGHADITTTQIYTHVLTER----LQ 289

Query: 312 EIYDQTHP 319
           E     HP
Sbjct: 290 EALRHHHP 297


>gi|223938788|ref|ZP_03630676.1| integrase family protein [bacterium Ellin514]
 gi|223892486|gb|EEF58959.1| integrase family protein [bacterium Ellin514]
          Length = 306

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 155/313 (49%), Gaps = 26/313 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++LQ L  ERG S+ T ++Y     +FL +      +K+T    +++    + AF+   
Sbjct: 6   EDFLQYLRHERGQSEHTQKTYAALLGKFLNWAQI---QKLT--DWKEVELKHLTAFLMFE 60

Query: 79  R-----------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
           R            +K+   S+   ++ +++F K+ +  KI   +   ++   ++   LP+
Sbjct: 61  RERLVEVKEGQSPRKLSSESVYLEIAALRAFYKFAENEKILPLNIAESLSLPRRWKRLPK 120

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           AL++ +   L+   +  T          + A+L L Y  GLR++E  ++  + +  +   
Sbjct: 121 ALSDLEITQLLTLEIPETPRTLG-----DQAVLELAYASGLRLAELRNIRMEQLHLEVGF 175

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           + + GKG+K R+VP+     +A+  Y +   P  +       +F  +RG P       + 
Sbjct: 176 INVIGKGNKERVVPVGSKAVQALQRYLESGRPKLVTPRSPANVFLTMRGTPFAAVTLWKR 235

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           I+   +  G+  + T H LRHSFATHLL +G DLR IQ +LGH  +STT+IYT+V+    
Sbjct: 236 IKDRVKRSGVARNVTPHMLRHSFATHLLEHGADLRVIQELLGHANISTTEIYTHVS---- 291

Query: 307 GDWMMEIYDQTHP 319
           G  + E++ + HP
Sbjct: 292 GSRLREVHRKFHP 304


>gi|300115640|ref|YP_003762214.1| integrase family protein [Nitrosococcus watsoni C-113]
 gi|299541582|gb|ADJ29893.1| integrase family protein [Nitrosococcus watsonii C-113]
          Length = 310

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 147/308 (47%), Gaps = 25/308 (8%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           + +  + R+++L +L   +G S+ T  +Y  D    L     + EE    +   Q ++ +
Sbjct: 5   AVDFWQARKDFLAHLHYAKGYSQGTCYAYNSD----LGIWGRWLEE--AGKDWCQATHAD 58

Query: 71  IRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
              F++ + R +      + R  S + SF K+  K  +     I      K+   +P  L
Sbjct: 59  TEKFVAWQMRERGAKAHIVARRSSCLGSFYKWAMKNALVESDPIYLADKPKRPYRIPVWL 118

Query: 130 N--EKQAL--------TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
              E+QAL         L +N+   T    K +  R   +  L+   GLRISEAL++  +
Sbjct: 119 EKEEQQALQEATQRIDNLPENIFGRTQEHIKAVRRRYDVLFGLILNSGLRISEALAVKVR 178

Query: 180 NI--MDD-QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
           ++  M+    ++RI GKG++ R+VPL  +  +    +      D  +  + P      GK
Sbjct: 179 DVRVMNGIAKSVRIIGKGNRERLVPLPEAFGQVFGAWLQGREGDDFVFAKAP-----GGK 233

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           P  P   + Y+R+L    G+    T H LRH++AT LL +G +L  IQ++LGH  LSTTQ
Sbjct: 234 PPGPHAARAYLRRLIERAGIDKPVTPHKLRHTYATRLLESGAELVDIQALLGHVDLSTTQ 293

Query: 297 IYTNVNSK 304
           IYT+V+ +
Sbjct: 294 IYTHVSEE 301


>gi|260592787|ref|ZP_05858245.1| tyrosine recombinase XerD [Prevotella veroralis F0319]
 gi|260535318|gb|EEX17935.1| tyrosine recombinase XerD [Prevotella veroralis F0319]
          Length = 292

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 149/311 (47%), Gaps = 37/311 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L++ER  S  T++ Y  D ++F  F     +         QLS+  + + I +R  
Sbjct: 5   FLDYLKLERNYSPATVKHYRDDLKEFERFFQGLDQ---------QLSWESVDSDIVRRWM 55

Query: 81  QKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           + + D+     S+ R LS ++SF +Y  +R +  +  +  ++  ++   LP+ L E +  
Sbjct: 56  EYMMDKGNAASSVNRRLSALRSFYRYALRRNLVVKDPVHGIQGPRRKRPLPQFLKESEMD 115

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+D  +   S++    D     I+   Y  G+RISE + L  +++      +++ GK D
Sbjct: 116 QLLDERMWTDSYK----DVLARTIIVTFYETGVRISELIGLNDKDVDYINCEIKVTGKRD 171

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RI+P    + K +  Y      +   +  +  FR  +GK +          Q+R+ + 
Sbjct: 172 KQRIIPFGDELLKTLTAYQQQRDVETE-SESVAFFRTEKGKRVTD-------EQVRQMVK 223

Query: 256 LPLSTTA-------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           + LS  +       H LRH+FAT +L++   L S++ +LGH  LSTT+IYT+   +    
Sbjct: 224 INLSKVSTLKKRSPHVLRHTFATAMLNHDAGLESVKELLGHESLSTTEIYTHTTFEQ--- 280

Query: 309 WMMEIYDQTHP 319
            + ++Y+  HP
Sbjct: 281 -LKKVYNNAHP 290


>gi|27375301|ref|NP_766830.1| site-specific integrase/recombinase [Bradyrhizobium japonicum USDA
           110]
 gi|34222843|sp|Q89XW5|XERD_BRAJA RecName: Full=Tyrosine recombinase xerD
 gi|27348437|dbj|BAC45455.1| xerD [Bradyrhizobium japonicum USDA 110]
          Length = 318

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 142/302 (47%), Gaps = 36/302 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLA--FYTEEKITIQTIRQ-LSYTEIRAFISK 77
           +L  L  E+G    TL +Y  D   F  FL    ++      QT+R  L+  + R F S 
Sbjct: 14  FLDMLAAEQGAGPNTLDAYRRDLTDFSEFLGRVGHSFADAETQTLRDYLADLDTRGFKST 73

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    S+ R LS ++   ++L   +I  +     +   K+   LP+ L+    +  
Sbjct: 74  ---------SVARRLSAMRHLYRFLLNERIRGDDPAAILSGPKRGRGLPKVLS----IAD 120

Query: 138 VDNVLLHTSHETKWIDARNS---------AILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           VD +L      ++  DA  S          +L +LY  GLR+SE ++L       D   +
Sbjct: 121 VDRMLRRARELSEAEDASPSKRLRALRLYCLLEVLYATGLRVSELVALPRTAAKRDARMI 180

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQ-----LPLFRGIRGKPLNP 240
            ++GKG+K R+VPL  + R+A+ +Y    +    D    +       P F G  G  L  
Sbjct: 181 VVRGKGNKERLVPLNEASRQAMADYLAATEAAKSDKKTGVAASKWLFPSF-GESGH-LTR 238

Query: 241 GVFQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
             F R +++L    GL     + H LRH+FA+HLL NG DLR +Q++LGH  +STTQIYT
Sbjct: 239 QHFARDLKELAVASGLQARLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYT 298

Query: 300 NV 301
           +V
Sbjct: 299 HV 300


>gi|238760177|ref|ZP_04621324.1| Tyrosine recombinase [Yersinia aldovae ATCC 35236]
 gi|238701613|gb|EEP94183.1| Tyrosine recombinase [Yersinia aldovae ATCC 35236]
          Length = 263

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 133/264 (50%), Gaps = 12/264 (4%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           E++ +   + L   ++R+ +S+ +   +   SL   LS ++SFL ++  + +   +    
Sbjct: 5   EQMGLAHWQTLDAAQVRSLVSRSKRAGLHASSLALRLSALRSFLDWMVSQGVLQANPARG 64

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +   +    LP+ ++  +   L+D  L         +  R+ A+L ++YG GLR+SE + 
Sbjct: 65  VSTPRSGRHLPKNIDVDEVDKLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVG 118

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           +  +++      + + GKG K R +P+  +  K +  + +L   +L       +F    G
Sbjct: 119 MNCKHVDLASGEVWVMGKGSKERKLPIGRTAVKWLAHWLEL--RELFEPQDDAIFLANTG 176

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           K ++    Q+   +     G+      H LRHSFATH+L + GDLR++Q +LGH  L+TT
Sbjct: 177 KRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTT 236

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHP 319
           QIYT+++ ++    +  +YD  HP
Sbjct: 237 QIYTHLDFQH----LATVYDAAHP 256


>gi|227497530|ref|ZP_03927758.1| integrase/recombinase XerD [Actinomyces urogenitalis DSM 15434]
 gi|226832984|gb|EEH65367.1| integrase/recombinase XerD [Actinomyces urogenitalis DSM 15434]
          Length = 167

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 95/165 (57%), Gaps = 5/165 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A++ +LY  G+R+SE  +L   ++   + T+R+ GKG+K R+VP      +A+  ++
Sbjct: 6   RDQALVEMLYATGVRVSELCALDLADVDRGERTVRVLGKGNKERVVPYGTPAARALEGWW 65

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
            L       +    LF G RG  ++P   ++ + +L    G+P     H LRHS ATH+L
Sbjct: 66  QLRARLARPDSGQALFLGARGGRVDPRTVRQVVHRLAAEAGVP-DLGPHGLRHSAATHVL 124

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           S G DLRS+Q +LGH  L+TTQ YT+V+++     +  +Y+Q  P
Sbjct: 125 SGGADLRSVQELLGHSSLATTQRYTHVSAER----LRAVYEQAFP 165


>gi|313205824|ref|YP_004045001.1| integrase family protein [Riemerella anatipestifer DSM 15868]
 gi|312445140|gb|ADQ81495.1| integrase family protein [Riemerella anatipestifer DSM 15868]
 gi|315022781|gb|EFT35805.1| Probable integrase [Riemerella anatipestifer RA-YM]
 gi|325336737|gb|ADZ13011.1| Integrase, catalytic core, phage [Riemerella anatipestifer RA-GD]
          Length = 358

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 144/296 (48%), Gaps = 35/296 (11%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           +FEL +E      +L++ +G S+ TL++Y  +  Q L  L  +  ++++ + +R  SY  
Sbjct: 85  AFELFQE------HLKL-KGYSRNTLRTYAVEFAQLLYVLKDFPVDELSEERLR--SY-- 133

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
              F+      K+ +  +   ++ IK + +    RK        ++   KK   LP++LN
Sbjct: 134 ---FLYCFENLKLSEAEINSRINAIKFYFEQALHRK----KMFFDIPRPKKKKQLPKSLN 186

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           +KQ L + +             + ++  +L L YG GLR+SE ++L  ++I  +   +RI
Sbjct: 187 KKQILKIFEVT----------TNLKHRCMLQLCYGMGLRVSEIVNLKLEDICSETMRVRI 236

Query: 191 Q-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           +  KG K R+VPL  S+   +  YY           +  LF G  G   +    Q   + 
Sbjct: 237 ENAKGKKDRMVPLPESILPELRAYYR------EYKPKKYLFEGQYGGMYSVRSVQSVFKT 290

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             R  G+  +   H LRHS+ATHLL  G D+R IQ  LGH  + TTQIYT V S++
Sbjct: 291 AMRKAGINKTVGIHGLRHSYATHLLEMGTDIRYIQEFLGHNNIKTTQIYTQVTSEH 346


>gi|260767555|ref|ZP_05876491.1| tyrosine recombinase XerC [Vibrio furnissii CIP 102972]
 gi|260617455|gb|EEX42638.1| tyrosine recombinase XerC [Vibrio furnissii CIP 102972]
 gi|315178748|gb|ADT85662.1| site-specific tyrosine recombinase [Vibrio furnissii NCTC 11218]
          Length = 309

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 151/303 (49%), Gaps = 16/303 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  E+GLS  T ++Y    +Q L  +A +    + +   +Q+    +R   SK     + 
Sbjct: 23  LRSEKGLSLHTQRNY----KQQLTTMAQHLNH-MGLNQWQQVDAGWVRQLASKGMRDGMK 77

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             SL   LS ++SF  +L  R     +    +   +K   LP+ L+  +   L++     
Sbjct: 78  ASSLATRLSSLRSFFDFLILRGELNANPAKGVSAPRKKRPLPKNLDVDEMAQLLE----- 132

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
             +E   +  R+ A++ L+YG GLR++E +++  +++      +R+ GKG+K R  P   
Sbjct: 133 -VNEDDPLSIRDRAMMELMYGAGLRLAELVAINVRDVSLSAGEIRVIGKGNKERKAPFAG 191

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             ++ + ++  +    L  + +  LF    G  ++    Q+ + +      +    + H 
Sbjct: 192 QAKEWVGKWLKVRSSLLKGD-EPALFISQLGARISHRNVQKRMAEWGHKQSVASHISPHK 250

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ ++    + E+YDQ HP   +K
Sbjct: 251 LRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQH----LAEVYDQAHPRAHKK 306

Query: 325 DKK 327
            K+
Sbjct: 307 AKE 309


>gi|305681404|ref|ZP_07404211.1| site-specific tyrosine recombinase XerC [Corynebacterium
           matruchotii ATCC 14266]
 gi|305659609|gb|EFM49109.1| site-specific tyrosine recombinase XerC [Corynebacterium
           matruchotii ATCC 14266]
          Length = 331

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 111/204 (54%), Gaps = 14/204 (6%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K   SLP  +    A TL+  V    + E +++  R++A+L LLY  G+R+SE   +   
Sbjct: 136 KSGRSLPTVVTPTAAETLM--VSSQATTEPEYL--RDTAMLELLYATGIRVSELCGIDLA 191

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRG 235
           ++   ++T+++ GKG+K R+VP       A+  + D     L LN + P    LF G RG
Sbjct: 192 DVNYSRNTVKVTGKGNKQRVVPFGDPAASALKAWRDHGRPHL-LNPKKPAHNALFLGARG 250

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             ++P + +  + +    LG+      H+LRHS ATH+L  G DLR +Q +LGH  L TT
Sbjct: 251 GRIDPRMVRTVVARAGEQLGVD-GLGPHSLRHSAATHMLDGGADLRVVQELLGHSSLQTT 309

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHP 319
           QIYT+V++      + + Y+Q HP
Sbjct: 310 QIYTHVSTTR----LKQAYNQAHP 329


>gi|330466299|ref|YP_004404042.1| integrase family protein [Verrucosispora maris AB-18-032]
 gi|328809270|gb|AEB43442.1| integrase family protein [Verrucosispora maris AB-18-032]
          Length = 376

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 93/166 (56%), Gaps = 6/166 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+  +L LLYG G+R+SEA  +   +I   +  +R++GKG + R+VP     ++A+ E+ 
Sbjct: 214 RDRVLLELLYGTGVRVSEACGIDVADIDHGRRVVRVRGKGGRERVVPYGSPAQRALDEWL 273

Query: 215 DLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
               P  +    +  L  G+RG  LNP   ++ +    +  GLP     H LRHS ATHL
Sbjct: 274 RRGRPVLVVPGSRDALLLGVRGGRLNPTTARQIVGAYAQATGLP-RIGPHALRHSAATHL 332

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           L  G DLR++Q +LGH  L++TQ+YT+V+     D +   Y Q HP
Sbjct: 333 LEGGADLRAVQELLGHSSLASTQVYTHVSV----DRLRAAYRQAHP 374


>gi|328957573|ref|YP_004374959.1| tyrosine recombinase XerC [Carnobacterium sp. 17-4]
 gi|328673897|gb|AEB29943.1| tyrosine recombinase XerC [Carnobacterium sp. 17-4]
          Length = 191

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/198 (35%), Positives = 102/198 (51%), Gaps = 12/198 (6%)

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           +P+   EK+   L + V          +D RN AIL +LYG G+R+SE   +  ++I  +
Sbjct: 1   MPKFFYEKEMDALFEAV-----KGDGPLDFRNEAILEVLYGTGIRVSECSGIKLKDIDFE 55

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPG 241
            S L I+GKG+K R VP       AI +Y +     L   +  I   LF    G P+   
Sbjct: 56  LSVLLIRGKGNKERYVPFGHYAAVAIRDYMEKSRTPLMTKHKRIHDFLFVNHHGDPITAT 115

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             +  + Q+ +   L      H LRHSFATHLL+NG D+R++Q +LGH  LS+TQIY +V
Sbjct: 116 GIEYVLNQVIKRSSLTSDIHPHMLRHSFATHLLNNGADMRTVQELLGHASLSSTQIYAHV 175

Query: 302 NSKNGGDWMMEIYDQTHP 319
                 D + + Y Q HP
Sbjct: 176 TK----DLLQKNYRQFHP 189


>gi|261210165|ref|ZP_05924462.1| tyrosine recombinase XerC [Vibrio sp. RC341]
 gi|260840705|gb|EEX67254.1| tyrosine recombinase XerC [Vibrio sp. RC341]
          Length = 310

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 151/302 (50%), Gaps = 16/302 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  E+GLS  T ++Y+        +LA     ++ +    QL    +R  +   + + + 
Sbjct: 24  LHTEKGLSLYTQRNYKQQLETMARYLA-----QMGLANWSQLDAGWVRQLVVLGKRKGMK 78

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S+   LS ++SFL +L  R     +    +   +K   LP+ L+  +   L++     
Sbjct: 79  ASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRPLPKNLDVDEMAQLLEVT--- 135

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
              +   +  R+ AI+ L+YG GLR++E +S+  ++I      +R+ GKG+K R V    
Sbjct: 136 ---DDDPLSIRDRAIMELMYGSGLRLAELVSIDVKDINLRDGEIRVIGKGNKERKVWFAG 192

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             ++ + ++  L    L  + +  LF    G  ++    Q+ + +  +   +    + H 
Sbjct: 193 QAQEWVGKWLKLRS-QLADSGEPALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPHK 251

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++ ++    + ++YDQ HP   +K
Sbjct: 252 LRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQH----LAQVYDQAHPRARKK 307

Query: 325 DK 326
           +K
Sbjct: 308 NK 309


>gi|68171293|ref|ZP_00544693.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88658163|ref|YP_506998.1| tyrosine recombinase XerD [Ehrlichia chaffeensis str. Arkansas]
 gi|67999274|gb|EAM85923.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88599620|gb|ABD45089.1| tyrosine recombinase XerD [Ehrlichia chaffeensis str. Arkansas]
          Length = 309

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 152/298 (51%), Gaps = 27/298 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ +  E+ +S  T QSY  D    L+ L  + +    + T    S  E++ +I     
Sbjct: 10  FLEAIVAEKHVSHNTYQSYRTD----LLGLCKFIDRNDLLLT--DASIHELQDYIRFLYE 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     ++ R +S IK+   +L +  I      + + + K S SLP+ L+ ++   L+D 
Sbjct: 64  KGYKANTVSRKISAIKNLYGFLYRDNIIENDPTVYLDSPKLSRSLPKTLSYEEVNILLDV 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQST----LRIQGK 193
             L  S + + I+A    I+ +LY  G+RISE + L  + +   +DD  T    ++IQGK
Sbjct: 124 AALDVSPDGRRINA----IVNILYSSGIRISELVYLKFREVREALDDGDTEICHMKIQGK 179

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLR 251
             K RI+ L  S   +I +Y ++  + +    ++   LF G +    NP   QR + QL 
Sbjct: 180 AKKERIILLNSSAVTSIQKYMEVYEYFIPNGYKMSQWLFPGTKFD--NPVTRQR-VGQLL 236

Query: 252 RYLGLPLS-----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + L +         + H LRHSFATHLL+NG D+  IQ +LGH  L+TTQIYT+V S+
Sbjct: 237 KNLAMNAGINVTHVSPHKLRHSFATHLLNNGSDIVFIQKMLGHANLATTQIYTHVASE 294


>gi|253576347|ref|ZP_04853677.1| tyrosine recombinase XerD [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251844240|gb|EES72258.1| tyrosine recombinase XerD [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 323

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 88/312 (28%), Positives = 149/312 (47%), Gaps = 28/312 (8%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           ++  +++  L  +RGLS+ T +SY  D +Q++ +L     +   I   RQ++   I  + 
Sbjct: 3   RDAASFISFLAGQRGLSEATRESYARDLKQYISYL-----QSKQISDYRQVTRAGILLYF 57

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +  +       +++R    +++F +YL ++R+I  E +   M  + K    P      Q 
Sbjct: 58  AYLKDLGKAPATIQRVSVTLRAFFRYLLQERRI--EQDPFIMLEMPKVEKKP-----PQT 110

Query: 135 LTLVDNV-LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           LT+ +   LL        +  R+ A+L LLY  G+R+SE +SL   ++  +   LR  G+
Sbjct: 111 LTVEETERLLEAPKPDTPLGLRDKAMLELLYATGIRVSELISLNKDDVNLELHFLRCTGE 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDL------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
             K RI+P          E+ DL          L+      LF   RG  ++   F + +
Sbjct: 171 RGKERILPF----GGVTAEWLDLYLREGRSHLILDERENPALFPNRRGGRISRQGFWKLM 226

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++  +  G+    T HTLRHSFA HLL  G D+RS+Q +LGH   ST Q+Y + +  N  
Sbjct: 227 KKYGQEAGITSDITPHTLRHSFAVHLLERGADVRSVQELLGHSDASTIQMYVSRSRSN-- 284

Query: 308 DWMMEIYDQTHP 319
             +  +YD  HP
Sbjct: 285 --LKTVYDAFHP 294


>gi|118467405|ref|YP_888043.1| site-specific tyrosine recombinase XerD [Mycobacterium smegmatis
           str. MC2 155]
 gi|118168692|gb|ABK69588.1| tyrosine recombinase XerD [Mycobacterium smegmatis str. MC2 155]
          Length = 318

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 144/310 (46%), Gaps = 19/310 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS-- 76
           Q +L +L IERG++  TL SY  D R++   L      +  I  + +++ +++  F+   
Sbjct: 16  QGYLDHLTIERGVAANTLSSYRRDLRRYAEHL-----RQRGIDDLARVAESDVSDFLVAL 70

Query: 77  KRRTQKIGDRSLKRSLSGIK-----SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           +R     G  +L    +           ++     +T       ++    S  LP++L  
Sbjct: 71  RRGDPDAGVTALSAVSAARAVVAVRGLHRFAAAEGLTENDVARAVKPPTPSRRLPKSLTL 130

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            + L L++     +  ++  +  RN A+L LLY  G RISEA+ L   ++     ++ + 
Sbjct: 131 DEVLALLEAAGGDSEADSP-LTLRNRALLELLYSTGARISEAVGLDVDDVDTQARSVLLH 189

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQ 249
           GKG K R+VP+      A+  Y      DL    +    +F   RG  L+     + ++ 
Sbjct: 190 GKGGKQRLVPIGRPAVSALDAYLVRGRPDLARRGRGTPAIFLNARGGRLSRQSAWQVLQD 249

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+  + + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V        
Sbjct: 250 SAERAGIASAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTVHT---- 305

Query: 310 MMEIYDQTHP 319
           + E++   HP
Sbjct: 306 LREVWAGAHP 315


>gi|238756290|ref|ZP_04617605.1| Tyrosine recombinase [Yersinia ruckeri ATCC 29473]
 gi|238705496|gb|EEP97898.1| Tyrosine recombinase [Yersinia ruckeri ATCC 29473]
          Length = 276

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 140/286 (48%), Gaps = 17/286 (5%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
           +T+ SY   +RQ    +    +  + +     L   ++R+ +S+ +   +   SL   LS
Sbjct: 1   MTITSY---SRQLQALMELAGQ--MELSHWENLDAAQVRSLVSRSKRAGLQSASLALRLS 55

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            ++SFL +L  + +   +    +   +    LP+ ++  +   L+D  L         + 
Sbjct: 56  ALRSFLDWLVSQGVLHANPAKGVSTPRTGRHLPKNIDVDEVSRLLDIDL------NDPLA 109

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            R+ A+L ++YG GLR++E + +  +++      + + GKG K R VP+  +     L++
Sbjct: 110 VRDRAMLEVMYGAGLRLAELVGMDGKHVDLASGEIWVMGKGSKERKVPM-GATAVTWLQH 168

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
           + L   DL       +F    GK ++    Q+   +     G+      H LRHSFATH+
Sbjct: 169 W-LALRDLFAPSDDAIFLANTGKRISARNVQKRFAEWGIKQGVSSHIHPHKLRHSFATHM 227

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           L + GDLR++Q +LGH  L+TTQIYT+++ ++    +  +YD  HP
Sbjct: 228 LESSGDLRAVQELLGHANLTTTQIYTHLDFQH----LATVYDAAHP 269


>gi|254476039|ref|ZP_05089425.1| tyrosine recombinase XerD [Ruegeria sp. R11]
 gi|214030282|gb|EEB71117.1| tyrosine recombinase XerD [Ruegeria sp. R11]
          Length = 332

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 86/281 (30%), Positives = 135/281 (48%), Gaps = 18/281 (6%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G +  TL +Y  D +    +LA     +I  +T    S  +I +++     + +   +  
Sbjct: 23  GAAHNTLLAYGRDLKDVAAWLA---ARQIGFETA---SRDQIESYLIACDAEGLSRATRA 76

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R LS IK   ++        ++  + ++   +  SLP+ L   +   L+D       +  
Sbjct: 77  RRLSAIKQIYRFAFDEGWRDDNPAIQIKGPGRQKSLPKTLEVIEVDKLLDAARQSGRNLP 136

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
             I  RN+ ++ LLY  G+R+SE + L       D   L + GKG K R+VPL P  R A
Sbjct: 137 DRI--RNTCLMELLYATGMRVSELVGLPVTAARGDPRMLLVLGKGGKERMVPLSPPARDA 194

Query: 210 I---LEYYDLCPFDLNLNIQLP---LF--RGIRGKPLNPGVFQRYIRQLRRYLGL-PLST 260
           +   L + D            P   LF  RG  G  L    F   I++     G+ P + 
Sbjct: 195 LAAWLAHRDKAEEAAVAKGAPPSRYLFPSRGKSGH-LTRHRFYLLIKEFAVTAGISPEAV 253

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + HTLRH+FATHLL+NG DLR+IQ++LGH  ++TT+IYT+V
Sbjct: 254 SPHTLRHAFATHLLANGADLRAIQALLGHADIATTEIYTHV 294


>gi|227504796|ref|ZP_03934845.1| site-specific tyrosine recombinase XerC [Corynebacterium striatum
           ATCC 6940]
 gi|227198646|gb|EEI78694.1| site-specific tyrosine recombinase XerC [Corynebacterium striatum
           ATCC 6940]
          Length = 299

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 66/200 (33%), Positives = 104/200 (52%), Gaps = 10/200 (5%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K    LP+ L   +A  LV N   H   E  ++  R+SA+L LLY  G+R++E + L   
Sbjct: 108 KVGKHLPKVLAATEAGELVGNAASHD--EVHFL--RDSAMLELLYATGMRVAELVGLDVG 163

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           ++   + T  + GKG+K R+VP   +   A+  + +     L  +    +F G RG  ++
Sbjct: 164 DLDLHRRTALVTGKGNKQRVVPFGDAASDALATWIEKGRLQLAGDTD-AVFVGTRGGRID 222

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               +R + +  +  G     T H LRH+ ATHLL  G DLR +Q +LGH  L TTQ+YT
Sbjct: 223 QRQVRRVVEKAAQITG-ATGLTPHGLRHTAATHLLEGGADLRVVQELLGHSSLQTTQVYT 281

Query: 300 NVNSKNGGDWMMEIYDQTHP 319
           +V++K     + + Y + HP
Sbjct: 282 HVSAKR----LKDAYSRAHP 297


>gi|86133261|ref|ZP_01051843.1| phage integrase family protein [Polaribacter sp. MED152]
 gi|85820124|gb|EAQ41271.1| phage integrase family protein [Polaribacter sp. MED152]
          Length = 385

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 86/279 (30%), Positives = 140/279 (50%), Gaps = 36/279 (12%)

Query: 32  SKLTLQSYECDTRQFLI--FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           S+ TL++Y      F I  F+ F++++  +      L   ++  FI K   ++    S +
Sbjct: 107 SESTLKTY-----TFFIADFINFHSKKACS-----DLDNRDVELFIEKVFIERNYSVSSQ 156

Query: 90  RS-LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           R  +S +K F  Y    KI    N + +   KKS  LP  L++++ L ++          
Sbjct: 157 RQFISALKIFTNYYPSTKI----NDIELTRPKKSKKLPSVLSQEEVLRIISVT------- 205

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVR 207
               + ++ AI+ LLY CGLRISE ++L  ++   ++  L ++ GKG K R V L  S  
Sbjct: 206 ---TNLKHRAIIALLYSCGLRISELINLKLKDFHIERKQLIVKSGKGRKDRYVSLAESFM 262

Query: 208 KAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
             +  YY    P +           G+ G+  +    + ++++  +  G+  + T HTLR
Sbjct: 263 PLLKNYYYSYEPKEF-------FVEGMNGEKYSASSVRAFLKKSCKKAGIQRAVTPHTLR 315

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           HS+ATHLL NG D+R IQS+LGH R  TT IYT+V  K+
Sbjct: 316 HSYATHLLENGVDIRYIQSLLGHSRPETTMIYTHVKRKD 354


>gi|291548057|emb|CBL21165.1| tyrosine recombinase XerD subunit [Ruminococcus sp. SR1/5]
          Length = 294

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 136/287 (47%), Gaps = 24/287 (8%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97
           SY+ D ++  ++ A        I  IR +   E+  ++S     +    ++ R+++ I++
Sbjct: 25  SYQRDLKKMAVYFA-----DRGIYDIRDVGELELEGYLSYMERGQFASSTISRNVASIRA 79

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
             +YL +         L ++  K    +P  L   +   L+    L+T    K I  R+S
Sbjct: 80  LFQYLYQENRIERDPSLELKPPKVEKRMPEILTVDEVDRLLKQPDLNTP---KGI--RDS 134

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLR----IQGKGDKIRIVPLLPSVRKAILEY 213
           A+L LLY  G+R+SE L L  +++      LR    +    DK R++P+    + A+ +Y
Sbjct: 135 AMLELLYATGMRVSELLRLNLEDL-----NLRLGYVVCHDEDKERVIPIGNVCKTAMEKY 189

Query: 214 YDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                   +  N    LF    GK ++   F + ++      G+    T HTLRHSFA H
Sbjct: 190 LKEARGKFVKENETESLFTNCSGKSMSRQGFWKVLKGYAEEAGIQHDITPHTLRHSFAAH 249

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           +L NG D++S+Q +LGH  +STTQ+Y N     G   M ++Y + HP
Sbjct: 250 MLQNGADVKSVQEMLGHSDISTTQVYLNF----GVAKMRDVYMKAHP 292


>gi|157960209|ref|YP_001500243.1| tyrosine recombinase XerC [Shewanella pealeana ATCC 700345]
 gi|157845209|gb|ABV85708.1| tyrosine recombinase XerC [Shewanella pealeana ATCC 700345]
          Length = 304

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 161/331 (48%), Gaps = 47/331 (14%)

Query: 13  ELLKERQNWLQNLE----IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS- 67
           E L     WL + E     ER +S  T+++Y  + ++          EK+  +T   LS 
Sbjct: 4   EALSSNVRWLTDFERYLRTERQVSAYTVRNYLFELKRV---------EKLFSETDSWLSL 54

Query: 68  -YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
            +  ++A ++K   + +  RSL  +LS +K F ++L + +    +  +++   K+   LP
Sbjct: 55  QHESLQAMLAKLHRKGLSPRSLSLTLSSLKQFYEFLLREQQIKVNPAISLTAPKQGKPLP 114

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDA-----RNSAILYLLYGCGLRISEALSLTPQNI 181
           + ++       VD+V    SH            R+ AI+ L Y  GLR++E  +L   +I
Sbjct: 115 KNMD-------VDSV----SHLLDLDGDDPLSLRDKAIMELFYSSGLRLAELAALNVGDI 163

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGK 236
              Q+ +++ GKG K RIVP+      AI ++ D+     C  D        LF   +GK
Sbjct: 164 QFSQAQVKVLGKGSKERIVPIGKLALTAINQWLDIKRDIACEDD-------ALFVTAKGK 216

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L     Q  + +  +   + +    H LRHSFATH+L +  DLR++Q +LGH  LSTTQ
Sbjct: 217 RLAHRSIQARLAKWGQEQAIGIKVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQ 276

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
           +YT+++ ++    + ++YD  HP   ++  K
Sbjct: 277 VYTSLDFQH----LAKVYDNAHPRAKKRGDK 303


>gi|189465402|ref|ZP_03014187.1| hypothetical protein BACINT_01751 [Bacteroides intestinalis DSM
           17393]
 gi|189437676|gb|EDV06661.1| hypothetical protein BACINT_01751 [Bacteroides intestinalis DSM
           17393]
          Length = 294

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 152/311 (48%), Gaps = 33/311 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L  L+ ER  S+ T++SY  D RQF         E+   + I   + +E++A + + 
Sbjct: 5   DSFLDYLQYERNYSEETIKSYREDLRQF---------EEFAREEIGDSAPSEVKAELVRE 55

Query: 79  RTQKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
               + DR     S+ R LS ++SF K+L ++     + +  +   K    LP  L E  
Sbjct: 56  WIVSLMDRGYTSTSINRKLSSLRSFYKFLLRKGEVAVNPLQKITGPKNKKPLPAFLRESD 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D V         +   R+  I+ + Y  G+R+SE + L  +++    S +++ GK
Sbjct: 116 MDRLLDEVDFGEG----FKGCRDHMIIEMFYATGVRLSELIGLDNKDVDFSSSLIKVTGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-R 248
            +K R++P    ++ A++EY D+     P   N       F    G+ L+  + +  + R
Sbjct: 172 RNKQRLIPFGEELKIAMMEYVDVRNEAVPIRTN-----AFFVRENGERLSRSIVENLVKR 226

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            L + + L    + H LRH+FAT +L++  +L +I+ +LGH  L+TT++YT+   +    
Sbjct: 227 NLSKVVTLK-KRSPHVLRHTFATTMLNHDAELGAIKELLGHESLATTEVYTHTTFEE--- 282

Query: 309 WMMEIYDQTHP 319
            + ++Y+  HP
Sbjct: 283 -LKKVYNLAHP 292


>gi|289643920|ref|ZP_06476023.1| tyrosine recombinase XerD [Frankia symbiont of Datisca glomerata]
 gi|289506249|gb|EFD27245.1| tyrosine recombinase XerD [Frankia symbiont of Datisca glomerata]
          Length = 323

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 152/333 (45%), Gaps = 62/333 (18%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS---YTEIRAFI 75
           + +L +L  ERGL++ ++ +Y  D R++L        E ++++ +R L+    +E+  F 
Sbjct: 10  ERFLDHLAGERGLARNSVLAYRRDLRRYL--------EHLSLRGVRSLADVDESEVAEFA 61

Query: 76  SKRRTQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +  R        +   S+ R L  ++S  ++  +    T      +R       LPRAL 
Sbjct: 62  ATLREGAGEHPPLAASSVARMLVSVRSLHRFAAREGEVTSDVSRPVRPPTPPRRLPRALT 121

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNS------AILYLLYGCGLRISEALSLTPQNIMDD 184
             Q + ++       +       A  S      A+L LLYG G RISEA+ L   ++  D
Sbjct: 122 VDQVVAVLRAASTSAAGGPGGDPAEGSRQLRAVALLELLYGTGARISEAVGLDVDDLDLD 181

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL------ 238
            +++R+ GKG + R+VPL     +A+  Y                   +R +P+      
Sbjct: 182 AASVRLLGKGGRARVVPLGRYAGEALAAYL------------------VRARPVLASRRA 223

Query: 239 NPGVF--QRYIRQLRRYLGLPLSTTA----------HTLRHSFATHLLSNGGDLRSIQSI 286
           +P VF  +R  R  R+     L T A          H LRHSFATHLL  G D+R +Q +
Sbjct: 224 SPAVFLSRRGTRLSRQSAWTVLRTAAVAAGVEGVSPHVLRHSFATHLLDGGADVRVVQEL 283

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           LGH  +STTQIYT V      D + E+Y  +HP
Sbjct: 284 LGHASVSTTQIYTLVTV----DRLREVYATSHP 312


>gi|288929393|ref|ZP_06423238.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288329495|gb|EFC68081.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 293

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 145/307 (47%), Gaps = 25/307 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L+ E   S+LT+ SY  D R F  F     + K T     QLS+  + A + + 
Sbjct: 4   EQFLNYLQYELNRSELTIASYGDDLRAFEAFF----KNKDT-----QLSWEAVDADLIRN 54

Query: 79  RTQKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             + + D+     +++R LS ++SF ++   R    ++    +   K+S  LP+ L E +
Sbjct: 55  WMESMMDKGCSATTIQRRLSALRSFYRFGLTRGYVEKNPARGVVGPKRSRPLPQFLREGE 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D V +  S+     D     I+   Y  G+R++E + L   +I      +++ GK
Sbjct: 115 MDRLLDEVPVGESYR----DLLAYTIVLTFYSTGMRLAELVGLNDDSIDFGARVIKVLGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K R++P    +  A+  Y  +   D  +       F   RG+ +  G  Q  +R    
Sbjct: 171 GSKQRLIPFADELEAALKAY--IARRDAEVARCDKAFFVDQRGERVKRGAVQNSVRASLA 228

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            +      + H LRHSFAT +L+N   L S++ +LGH  LSTT+IYT+   +     + +
Sbjct: 229 KVTSMKKRSPHVLRHSFATAMLNNDAGLESVKKLLGHESLSTTEIYTHTTFEQ----LRK 284

Query: 313 IYDQTHP 319
           IYD+ HP
Sbjct: 285 IYDKAHP 291


>gi|288947732|ref|YP_003445115.1| integrase family protein [Allochromatium vinosum DSM 180]
 gi|288898248|gb|ADC64083.1| integrase family protein [Allochromatium vinosum DSM 180]
          Length = 308

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 144/299 (48%), Gaps = 25/299 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS- 76
           R++++ +L   RG ++ T   Y  D    L     + +E  +    R+ S+ E+  +I+ 
Sbjct: 10  RKDFMSHLRYTRGCAESTCYGYHSD----LGIWGRWLDE--SEHDWRECSHIEVEQWINV 63

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE----- 131
           + R +K+    + R +S + +F K+  K K+     +      K    +P  L       
Sbjct: 64  QTRERKVKPHIISRRVSALSTFYKWALKSKLVETDPVYLAEKPKTPQRIPIWLERDEQDR 123

Query: 132 -KQAL----TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---D 183
            K+AL     L +N+  +T      I  R   +  LL   GLRISEAL+L  +++     
Sbjct: 124 LKEALRDISDLPENIFGNTPETIMLIRQRYQVLFDLLQNSGLRISEALALRVRDVRVTGQ 183

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
              ++R+ GKG+K R+VPL  +  + +  +    P D     +    +   G P  P   
Sbjct: 184 IARSVRVIGKGNKERMVPLPVAFGEELAAWISDLPSD-----EFIFAKESGGDPPKPRTV 238

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           + Y+ ++ +  GL    T H LRH++AT LL +G +L  IQ++LGH  L+TTQ+YT+V+
Sbjct: 239 RDYLSKIIKKAGLDKKITPHKLRHTYATRLLESGAELIDIQALLGHANLATTQMYTHVS 297


>gi|238750683|ref|ZP_04612182.1| Tyrosine recombinase [Yersinia rohdei ATCC 43380]
 gi|238711073|gb|EEQ03292.1| Tyrosine recombinase [Yersinia rohdei ATCC 43380]
          Length = 263

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 132/264 (50%), Gaps = 12/264 (4%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           E + +   + L   ++R+ +S+ +   +   SL   LS ++SFL +L  + +   +    
Sbjct: 5   EPMGLVHWQTLDAAQVRSLVSRSKRAGLHSSSLALRLSALRSFLDWLVSQGVLNANPAKG 64

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +   +    LP+ ++  +   L+D  L         +  R+ A+L ++YG GLR+SE + 
Sbjct: 65  VSTPRSGRHLPKNIDVDEVDKLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVG 118

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           +  +++      + + GKG K R VP+  +     LE++ L   +L       +F    G
Sbjct: 119 MNCKHVDLASGEVWVMGKGSKERKVPIGKTA-VTWLEHW-LALRELFEPQDDAIFLANTG 176

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           K ++    Q+   +     G+      H LRHSFATH+L + GDLR++Q +LGH  L+TT
Sbjct: 177 KRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTT 236

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHP 319
           QIYT+++ ++    +  +YD  HP
Sbjct: 237 QIYTHLDFQH----LATVYDAAHP 256


>gi|293372459|ref|ZP_06618843.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292632642|gb|EFF51236.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 196

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 96/163 (58%), Gaps = 16/163 (9%)

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
           +K    RN AIL  LY CGLR+SE ++L   ++  D+  ++++GKG K R+VP+ P   +
Sbjct: 14  SKAEGQRNRAILETLYSCGLRVSELITLKLSDLYFDEGFIKVEGKGSKQRLVPISP---R 70

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGI---------RGKPLNPGVFQRYIRQLRRYLGLPLS 259
           AI E     P D N   Q+ + +G          RGK L+  +    I++L    G+  +
Sbjct: 71  AINEIKLYIP-DRN---QIEVKKGHEDFVFVSQRRGKGLSRIMIFHMIKELAEKAGITKN 126

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++
Sbjct: 127 ISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHID 169


>gi|149928222|ref|ZP_01916466.1| Tyrosine recombinase XerC [Limnobacter sp. MED105]
 gi|149823028|gb|EDM82269.1| Tyrosine recombinase XerC [Limnobacter sp. MED105]
          Length = 298

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 128/258 (49%), Gaps = 13/258 (5%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           Q++ T +++ +++R        SL R  S  + F KYL    I      L ++  K + S
Sbjct: 48  QVTTTALKSILAQRHAAGAAPASLARLASSWRGFFKYLLNNGIVEVDPTLGLKTPKLTRS 107

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP+A+       L+   L     E ++  A+   ++ LLY  GLRISEAL+L  +  ++ 
Sbjct: 108 LPKAVGVDPLAALLAKPL---PQEFRF--AQAHVLIELLYCTGLRISEALTLQAEA-LNG 161

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRGKPLNPG 241
            + LR+ GKG+K RIVP++ +++  + E+ +   +    L       LF   +G  L   
Sbjct: 162 STELRVVGKGNKARIVPVVDALQARLREFVEPRQIHLLKLGKGQGASLFVSAKGLALTAR 221

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             QR I       GL      H LRHSF +HLL    +LR++Q +LGH  +++TQ+YT +
Sbjct: 222 QAQRDIADHAAKCGLGQHLHPHMLRHSFGSHLLQGTQNLRAVQELLGHASIASTQVYTAL 281

Query: 302 NSKNGGDWMMEIYDQTHP 319
           +     D +  +YD   P
Sbjct: 282 DF----DHLSSVYDNAFP 295


>gi|51459866|gb|AAU03829.1| integrase/recombinase [Rickettsia typhi str. Wilmington]
          Length = 297

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 90/289 (31%), Positives = 148/289 (51%), Gaps = 24/289 (8%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           ER LSK ++ SY+   R  L F  + T++KI+   I   +   IR +I    +  +  RS
Sbjct: 5   ERALSKNSILSYK---RDLLDFHNYLTKQKISELNI---TTRNIRKWIEYLASNNLHARS 58

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           + R +S IKS+  +L     T  + +LN+   K  N LP  L+  Q    +  +L + S 
Sbjct: 59  INRKISTIKSYYTFLISENHTAFNPVLNVDLPKYQNKLPVILSIDQ----IKLILEYCSK 114

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-------LRIQGKGDKIRIV 200
           +      R +A+++LLY  GLR+SE +SL   +I+ + ++         + GKG+K R++
Sbjct: 115 DHTPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNNTSKGIVRKIFSVLGKGNKERVI 174

Query: 201 PLLPSVRKAILEYYDLCPFDLNLN-----IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            +      +I +Y  +    +N       I L     + G  +    F   ++ +   +G
Sbjct: 175 VINDQAVLSITKYLKIRDIFVNKAKSKNLIYLFPSSAVAGY-MTRQNFAILLKSVALDIG 233

Query: 256 L-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           L P + + H LRHSFA+HLL  G DLR IQ +LGH  +STTQIYT++++
Sbjct: 234 LNPKNVSPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLHT 282


>gi|329956681|ref|ZP_08297254.1| putative tyrosine recombinase XerC [Bacteroides clarus YIT 12056]
 gi|328524053|gb|EGF51129.1| putative tyrosine recombinase XerC [Bacteroides clarus YIT 12056]
          Length = 294

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 148/306 (48%), Gaps = 23/306 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L  L  ER  SK T++ Y  D    ++ L  + EE +   T   +    +R +I+  
Sbjct: 5   DSFLDYLLYERNYSKYTVEFYRTD----ILELQKFGEELLGNLTPSDVDVELVREWIASL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S+ R LS I+++ KYL ++ +     +  +   +K   LP  L E +   L+
Sbjct: 61  MDRGYAFNSINRKLSSIRTYYKYLLRKGVVESDPLQKITRPRKKKPLPVFLRESEMNRLL 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D++      E      R+  I+ + Y  G+R+SE + L  +++    S +++ GK +K R
Sbjct: 121 DDIDFGEGFEG----CRDRMIVEMFYATGMRLSELVGLDDKDVDFLASLIKVVGKRNKQR 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ--LRRYLGL 256
           ++P    +R ++ EY +        N   P+         N G   R I    ++R L  
Sbjct: 177 LIPFDEELRCSMQEYVN------ERNKSFPVRSDAFFIRKNGGRITRSIVAYIVKRNLSK 230

Query: 257 PLST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            ++    + H LRH+FAT +L+NG DL SI+ +LGH  L+TT++YT+   +     + ++
Sbjct: 231 VVTVKKRSPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHATFEE----LKKV 286

Query: 314 YDQTHP 319
           Y+Q HP
Sbjct: 287 YNQAHP 292


>gi|298346742|ref|YP_003719429.1| integrase/recombinase XerD family protein [Mobiluncus curtisii ATCC
           43063]
 gi|298236803|gb|ADI67935.1| integrase/recombinase XerD family protein [Mobiluncus curtisii ATCC
           43063]
          Length = 309

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 149/310 (48%), Gaps = 22/310 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFL---AFYTEEKITIQTIRQLSYTEIRAFI 75
           Q +L  L +ERG S  T+ +Y  D R+++ FL      + +++T+  +   +      F 
Sbjct: 9   QPYLDYLVVERGASPHTVAAYTRDLRRYITFLIANGVNSLDEVTLPLLESFARALEAGFG 68

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                  +   S +R+++ ++S+ +Y  +      +    +   K    LP  L  ++  
Sbjct: 69  DY---AAVAPSSARRAIASVRSWHRYAYETGAVRANPTKGIAPAKVGAHLPTVLTVEEVQ 125

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTL-RIQGK 193
           TL++      S        R+ A+L  LY  G RISEA++L   +I +D++  L R+ GK
Sbjct: 126 TLLEA----ASAPGDDNALRDRALLEFLYATGARISEAVNLAVDDINLDEEIPLVRLFGK 181

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           G K R+  +L  + K  LE Y L      L      Q  +F    G+PL+       I+ 
Sbjct: 182 GRKERL-SMLGHLAKDALEAY-LVRVRPRLAEKGRSQGRVFLNTLGRPLSRQSAWAIIQA 239

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +   + +    HTLRH FATHLL  G D+R++Q +LGH  ++TTQIYT V++    D 
Sbjct: 240 AAQRAQITVPVGPHTLRHCFATHLLQGGADVRAVQELLGHASVTTTQIYTKVSN----DM 295

Query: 310 MMEIYDQTHP 319
           + E+Y   HP
Sbjct: 296 LREVYASAHP 305


>gi|145594467|ref|YP_001158764.1| site-specific tyrosine recombinase XerD [Salinispora tropica
           CNB-440]
 gi|145303804|gb|ABP54386.1| tyrosine recombinase XerD [Salinispora tropica CNB-440]
          Length = 325

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 139/315 (44%), Gaps = 25/315 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L +L +ERGL+  TL SY  D   +L  LA      I +  +  ++  ++ A +++ 
Sbjct: 18  RGYLDHLAVERGLAANTLASYRRDLAHYLDTLA-----SIGVTDLASVAPGQVEAHLARL 72

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R    G R L  S +           R    E   L   +  +    P           V
Sbjct: 73  RVGNEGRRPLAASSAARAVSAVRGLHRFALREG--LTGADPSRDVRPPAPPRRLPRALPV 130

Query: 139 DNVL--------LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           D+V+        +  +     +  R+ A+L  LYG G RISEA+     ++  D   + +
Sbjct: 131 DDVIRLLEAVGPVSAAGGQAPLGLRDRALLEFLYGTGARISEAVGAAVDDLDLDAGAVLL 190

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIR 248
           +GKG + R+VP+      A+  Y     P         P +F   RG PL+       +R
Sbjct: 191 RGKGGRNRLVPIGGYAVAALHAYLVRARPGLAAAGGGTPRVFLNSRGGPLSRQGAWTILR 250

Query: 249 QLRRYLGL----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              R  GL    P + + HTLRHS+ATHLL  G D+R +Q +LGH  ++TTQ+YT V  +
Sbjct: 251 NAARRAGLSDVGPQAVSPHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVE 310

Query: 305 NGGDWMMEIYDQTHP 319
                + E+Y   HP
Sbjct: 311 R----LREVYATAHP 321


>gi|24375788|ref|NP_719831.1| integrase/recombinase XerC [Shewanella oneidensis MR-1]
 gi|34222793|sp|Q7ZAJ5|XERC_SHEON RecName: Full=Tyrosine recombinase xerC
 gi|24350736|gb|AAN57275.1|AE015863_4 integrase/recombinase XerC [Shewanella oneidensis MR-1]
          Length = 299

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 156/308 (50%), Gaps = 30/308 (9%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           ++ ER LS  T+++Y  + ++    L     E I +  + +  + ++   ++K   + + 
Sbjct: 16  MQSERQLSAHTVRNYLYELQRGRELLP----EGIDLLNVGREHWQQV---LAKLHRKGLS 68

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--L 142
            RSL   LS +K + ++L +      +    +   K++  LP+ ++       VD++  L
Sbjct: 69  PRSLSLWLSAVKQWGEFLLRAGAIELNPAKGLSAPKQAKPLPKNID-------VDSLTHL 121

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
           L        +  R+ AI+ L Y  GLR++E  +L   ++  DQ  +R+ GKG+K RIVP+
Sbjct: 122 LEIDGNDP-LTLRDKAIMELFYSSGLRLAELAALDLSSVQYDQREVRVLGKGNKERIVPV 180

Query: 203 LPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
                 AI   LE     P + N      LF   +GK L+    Q  + +  +   L + 
Sbjct: 181 GRYAIDAISAWLECRRQIPCEDN-----ALFVTEKGKRLSHRSIQARMSKWGQEQALSMR 235

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRHSFATH+L +  DLR++Q +LGH  LSTTQIYT+++ ++    + ++YD  HP
Sbjct: 236 VHPHKLRHSFATHMLESSADLRAVQELLGHENLSTTQIYTSLDFQH----LAKVYDNAHP 291

Query: 320 -SITQKDK 326
            +  Q+DK
Sbjct: 292 RAKKQQDK 299


>gi|206896382|ref|YP_002246413.1| tyrosine recombinase XerD [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738999|gb|ACI18077.1| tyrosine recombinase XerD [Coprothermobacter proteolyticus DSM
           5265]
          Length = 288

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 90/276 (32%), Positives = 142/276 (51%), Gaps = 21/276 (7%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +++G S  T+++Y  D  QF  +    T E+ +   I ++     R+++   R  ++   
Sbjct: 10  VKKGKSPHTIKNYISDLMQFQKWFEESTGEQFSPGKITEIDVRSYRSYLINIR--QLKPS 67

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S+KR L  I+ FL +  K+ I +++    +         PR+L+EK+ L L  +      
Sbjct: 68  SIKRKLEAIRKFLDWTVKQDIISKNPAKEVEAPASVTLPPRSLSEKEFLRLRRSFY---- 123

Query: 147 HETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLL 203
              K  + R+ AI  +L   G+R+SE  +L L+   I + +  L ++ GKG K R VPL 
Sbjct: 124 ---KEGNERDIAIFEVLANTGIRVSELCSLKLSDVQISERKGKLIVRYGKGQKYREVPLN 180

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTA 262
              RKA+ EY      + N      LF G RG PL P GVF R I++  R  G+ +S   
Sbjct: 181 SDARKALNEYLKSRADENNER----LFLGERG-PLTPSGVF-RIIKRYARDAGVEVS--P 232

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           H LRH+FA  LL +G D+ ++Q ILGH  L+TT +Y
Sbjct: 233 HQLRHTFARRLLQSGADIVTVQQILGHANLNTTAVY 268


>gi|255026829|ref|ZP_05298815.1| hypothetical protein LmonocytFSL_11776 [Listeria monocytogenes FSL
           J2-003]
          Length = 259

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 130/265 (49%), Gaps = 16/265 (6%)

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           I T +Q+++ ++R ++++ + +     ++ R +S ++SF  +L +  +  E+    + + 
Sbjct: 4   ITTYQQVTFLDVRIYLTELKQKSFSRTTVARKISSLRSFYTFLLRENVINENPFTYVSHA 63

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K    LP+    ++   L   V      + + +  R+  +L +LYG G+R+SE   +   
Sbjct: 64  KNQLRLPKFFYSEEMEALFQVVY----EDNETLTLRDRVLLEVLYGTGIRVSECAGILLP 119

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIR 234
           ++      + I+GKG+K R VP       AI +Y    P  +NL  +       L     
Sbjct: 120 DLDTSYQAILIRGKGNKERYVPFGAYAEDAITDY---LPERVNLMSRYKKSHDALLVNHY 176

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G PL     +  + ++     L      H LRH+FAT LL+NG D+R++Q +LGH  LS+
Sbjct: 177 GDPLTTRGIRYCLTKIISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSS 236

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHP 319
           TQIYT+V  ++    +   Y + HP
Sbjct: 237 TQIYTHVTKEH----LKSTYMKHHP 257


>gi|304384441|ref|ZP_07366845.1| tyrosine recombinase XerC [Prevotella marshii DSM 16973]
 gi|304334461|gb|EFM00750.1| tyrosine recombinase XerC [Prevotella marshii DSM 16973]
          Length = 301

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 146/311 (46%), Gaps = 37/311 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L+ E+  S  T+QSY+ D ++F        E  I +Q    LS+  + A + +   
Sbjct: 12  FLSYLQYEKRYSPRTVQSYDEDLKEF--------EAYIKVQG-NDLSWHSVDADVIRGWM 62

Query: 81  QKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           + + D+     ++ R LS ++SF ++   R + +      +   KK   LP+ + E +  
Sbjct: 63  ESMMDKGNVATTINRRLSALRSFYRFSLSRNLVSHDPAHAVVGPKKEKPLPQFVKETEMD 122

Query: 136 TLVDNVLLHTSHETKW----IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            L D        + +W     D R   IL   Y  G+R+SE   L   +I    S LR+ 
Sbjct: 123 ELFD--------KNRWGDTFKDVRARTILLTFYSSGIRVSELTGLHVSDIDFASSELRVT 174

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GK +K R++P    + + ++ Y  +       +    LF   +G+P+     Q    +++
Sbjct: 175 GKRNKQRVIPFGEELAEQLVRYLAIREVTAGYDTD-ALFITEKGRPMTMSQVQY---EVK 230

Query: 252 RYLGLPLS---TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +YLG   +    + H LRH+FAT +L++G  L S++ +LGH  LSTT+IYT+   +    
Sbjct: 231 KYLGRVCTLKKRSPHVLRHTFATAMLNHGAGLESVKKLLGHESLSTTEIYTHTTFEQ--- 287

Query: 309 WMMEIYDQTHP 319
            +  +Y   HP
Sbjct: 288 -LKNVYTNAHP 297


>gi|189182982|ref|YP_001936767.1| site-specific tyrosine recombinase XerD [Orientia tsutsugamushi
           str. Ikeda]
 gi|189179753|dbj|BAG39533.1| integrase/recombinase XerD [Orientia tsutsugamushi str. Ikeda]
          Length = 309

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 156/318 (49%), Gaps = 26/318 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ +  E+ +S  +L +Y+ D + F  FL     + I +Q+   ++  +I +FI   
Sbjct: 5   EQFLETVLAEKNVSANSLLAYKRDLQDFNDFL-----KSIQLQSSLAVTNNDIDSFIQHL 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +  RS+ R +S ++ +  +L          + N+   + S  LP+ L+ K+   L+
Sbjct: 60  LGKNLSFRSIARKISTLRQYYLFLLTENAVQADLVTNIEVPRYSTKLPKILSIKEIKVLI 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------G 192
           D     T+ E      R  A++ LLY  GLR+SE +S+   ++  D +T +I+      G
Sbjct: 120 DYCFKDTTAE----GIRTLAMICLLYSTGLRVSELVSVKITDLKFDHNTGKIKNHFVILG 175

Query: 193 KGDKIRIV---PLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYI 247
           KG+K R+V    L   V    L Y D   PF  N    + LF    +   +    F   +
Sbjct: 176 KGNKERLVIMNDLTGDVISKYLPYRDFFSPFK-NAKNSVYLFPSKAKQGYMTRQNFAILL 234

Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +      GL P + + H LRHSFA+HLL  G DL+ IQ +LGH  +S+TQIYT+V     
Sbjct: 235 KHAAINAGLSPDNVSPHILRHSFASHLLEGGADLKVIQELLGHVDISSTQIYTHVQP--- 291

Query: 307 GDWMMEIYDQTHPSITQK 324
            + +  + ++ HP+  +K
Sbjct: 292 -ERLKHVIEKYHPASLKK 308


>gi|313674236|ref|YP_004052232.1| integrase family protein [Marivirga tractuosa DSM 4126]
 gi|312940934|gb|ADR20124.1| integrase family protein [Marivirga tractuosa DSM 4126]
          Length = 379

 Score =  105 bits (262), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 140/280 (50%), Gaps = 31/280 (11%)

Query: 28  ERGLSKLTLQSYECDTRQFLI-----FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           E  L++L  + Y C T +  I     F+ +Y+++K+T     +L   EI+ FI     +K
Sbjct: 109 ENYLNELNQRRYACSTVKSYIACFERFINYYSKKKMT-----ELGEEEIKKFIQNLIDKK 163

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
             D S+   ++ IK + + ++K      +   +    +K   LP  L++++ L ++ N  
Sbjct: 164 YSDSSVNMHINAIKFYYEVVEK----MPNRFYDFARPQKEERLPEVLSKEEILQMIANC- 218

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVP 201
               H  K     +  I+ LLY  GLR SE L+L   +I   + ++ I Q KG K RI  
Sbjct: 219 ----HNLK-----HKCIVSLLYSAGLRRSELLNLKLTDIDSGRMSILIRQAKGKKDRISI 269

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           L  ++   +  Y+       +   ++ LF G +G+  +     + +++  +  G+    T
Sbjct: 270 LGNTILDDLRAYFK------SYRPKVFLFEGAQGQQYSSTSVSKIVKKTAQRAGIKKRVT 323

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            H LRHSFATHLL  G DLR IQS+LGH   +TT+IYT+V
Sbjct: 324 PHMLRHSFATHLLEAGTDLRYIQSLLGHNNSNTTEIYTHV 363


>gi|295426272|ref|ZP_06818932.1| tyrosine recombinase XerC [Lactobacillus amylolyticus DSM 11664]
 gi|295064011|gb|EFG54959.1| tyrosine recombinase XerC [Lactobacillus amylolyticus DSM 11664]
          Length = 307

 Score =  105 bits (262), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 151/313 (48%), Gaps = 23/313 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  L+ ER  SK T+ SY+ D    L+    +  E        ++   +I  ++     
Sbjct: 10  FISYLKNERQYSKNTILSYQTD----LLEAKSFWRENGGFVDWDKIQTRDIEVYLQSMAE 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKIT----TESNILNMRNLKKSNSLPRALNEKQALT 136
           +K+   S  R +S ++SF ++L KRK+     T++ +L     K    LP+     +   
Sbjct: 66  RKLSRNSQMRKMSSLRSFYRFLAKRKLIKVDPTQTIVLRTEERK----LPQFFYAPEMKQ 121

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           ++ ++  +T+     +  RN A+  L Y  G+R+SE  SL    +  D   + + GKG+K
Sbjct: 122 VISSLQGNTA-----LTERNLALFELFYTTGMRVSEVSSLKINQVDFDLQMILVHGKGNK 176

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            R V      + A+  Y +     L  +   Q  +F   +G+PL     +  +++     
Sbjct: 177 DRYVAFDDKTKSALQNYLENARPKLLGSKADQDFIFLNNQGQPLTDRGIEYIMQRTFNKA 236

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+      H LRH+FAT +L+NG DLR++Q +LGH  LSTTQIYT+V   +    + + Y
Sbjct: 237 GISGKVHPHELRHTFATAMLNNGADLRTVQELLGHENLSTTQIYTHVTMAH----LQDEY 292

Query: 315 DQTHPSITQKDKK 327
            +  P  ++KDKK
Sbjct: 293 QKFFPRNSRKDKK 305


>gi|167764388|ref|ZP_02436513.1| hypothetical protein BACSTE_02776 [Bacteroides stercoris ATCC
           43183]
 gi|167697793|gb|EDS14372.1| hypothetical protein BACSTE_02776 [Bacteroides stercoris ATCC
           43183]
          Length = 294

 Score =  105 bits (262), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 148/306 (48%), Gaps = 23/306 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L  L  ER  S+ T++ Y  D    ++ L  + E+ +       +    IR +I   
Sbjct: 5   DSFLDYLLYERNYSEGTVRYYRTD----ILELQKFGEKLLGDLAPSDVGVDLIREWIVSL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     ++ R LS ++++ KYL K+ +     +  +   KK   LP  L E +   L+
Sbjct: 61  MDKGYAPNTVNRKLSSVRTYYKYLLKKGLVAADPLRRVTGPKKKKPLPVFLREGEVDRLL 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D+V      E      R+  I+ + Y  G+R+SE + L  +++    S +++ GK +K R
Sbjct: 121 DDVDFGERFEG----YRDRLIIEMFYTTGMRLSELIGLDDKDVDFSASLIKVTGKRNKQR 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-----FRGIRGKPLNPGVFQRYIRQLRRY 253
           ++P    + +++ EY ++       N  LP+     F    G+ L  G+    +R+    
Sbjct: 177 LIPFDKELGRSMQEYVNVR------NQALPVRSDAFFVRKNGERLGRGIVAYIVRRNLSK 230

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +      + H LRH+FAT +L+NG DL SI+ +LGH  L+TT++YT+   +     + ++
Sbjct: 231 VVTVKKRSPHVLRHTFATAMLNNGADLSSIKELLGHESLATTEVYTHTTFEE----LKKV 286

Query: 314 YDQTHP 319
           Y+Q HP
Sbjct: 287 YNQAHP 292


>gi|139439759|ref|ZP_01773150.1| Hypothetical protein COLAER_02181 [Collinsella aerofaciens ATCC
           25986]
 gi|133774909|gb|EBA38729.1| Hypothetical protein COLAER_02181 [Collinsella aerofaciens ATCC
           25986]
          Length = 220

 Score =  105 bits (262), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 73/208 (35%), Positives = 99/208 (47%), Gaps = 17/208 (8%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K    LP  L  +Q        LL T   +     R++A+L LLY  G RISE  +L  +
Sbjct: 19  KLPRDLPGVLTTQQV-----EALLKTPDTSTPAGLRDAAMLELLYASGARISELAALNVE 73

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--------PLFR 231
           +I   + TLR+ GKG K RIVPL     +A   Y +    +L    +         PL  
Sbjct: 74  SIGWSERTLRLWGKGSKERIVPLYRRALEATRLYIEEGRPELLAQAKRRDPATGPHPLLI 133

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
             RG  ++  + +R    L    G+P     H +RH+FAT LL  G DLRS+Q +LGH  
Sbjct: 134 SARGNRMSAAMLRRRFHTLATLAGIPADIAPHAMRHTFATDLLEGGADLRSVQELLGHAS 193

Query: 292 LSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           LSTTQIYT++      D +     Q HP
Sbjct: 194 LSTTQIYTHLTP----DRLKRAVAQAHP 217


>gi|149184272|ref|ZP_01862590.1| integrase [Erythrobacter sp. SD-21]
 gi|148831592|gb|EDL50025.1| integrase [Erythrobacter sp. SD-21]
          Length = 292

 Score =  105 bits (262), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 140/301 (46%), Gaps = 23/301 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L  ERG ++ TL +Y  D  Q    L     EK+   T  QL+          + 
Sbjct: 6   DFLAMLAAERGAARNTLLAYGRDLNQAEELLG----EKLAGATPAQLAKL-------GQG 54

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +   +L R +S ++ F  +L       +     +        LP+ L+  Q   L  
Sbjct: 55  WSSLAPATLARKISALRQFFGFLVDEGEREDDPTYALPRPATRRPLPKILSHAQVEALFG 114

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                 + +      R  A+L LLYG GLR SE +SL    +  D+  L + GKG + R+
Sbjct: 115 RAEDEAASDRPQA-VRLLAMLELLYGSGLRASELVSLPLSAVPRDEPFLTVTGKGGQARL 173

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VP+    ++A+  +  L P   N      LF    G      ++Q  +++L     LP  
Sbjct: 174 VPVSTRAKQALSRWLALRPTGSNY-----LFPSRSGHLTRIRLYQ-MLKELAVRADLPPE 227

Query: 260 T-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FATHLL  G DLR++Q++LGH  ++TTQIYT+V++      ++++ ++ H
Sbjct: 228 KLSPHVLRHAFATHLLEGGADLRALQTLLGHADIATTQIYTHVDAAR----LVKLVNERH 283

Query: 319 P 319
           P
Sbjct: 284 P 284


>gi|118464686|ref|YP_882254.1| site-specific tyrosine recombinase XerD [Mycobacterium avium 104]
 gi|254775522|ref|ZP_05217038.1| site-specific tyrosine recombinase XerD [Mycobacterium avium subsp.
           avium ATCC 25291]
 gi|118165973|gb|ABK66870.1| tyrosine recombinase XerD [Mycobacterium avium 104]
          Length = 313

 Score =  105 bits (262), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 150/325 (46%), Gaps = 29/325 (8%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + +  L  + Q +L +L IERG++  TL SY  D R++   L+        I  + ++  
Sbjct: 1   MTTVALETQLQGYLDHLTIERGVAANTLSSYRRDLRRYTKHLS-----DRGISDLAKVGE 55

Query: 69  TEIRAFISKRRTQKIGD----------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
            ++  F+   R    GD           S  R+L  ++   ++L    +        +R 
Sbjct: 56  DDVSDFLVALRR---GDPDTGAAALSAVSAARALIAVRGLHRFLAAEGLAELDVARAVRP 112

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
                 LP++L   Q L L++     +  +   +  RN A+L LLY  G RISEA+ L  
Sbjct: 113 PTPGRRLPKSLTIDQVLALLEAAGGESPADGP-LTLRNRALLELLYSTGARISEAVGLDV 171

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPL-LPSVRKAILEYYDL---CPFDLNLNIQLPLFRGIR 234
            ++     ++ ++GKG K R+VP+  P+V  A L+ Y +               +F  +R
Sbjct: 172 DDVDTQARSVLLRGKGGKQRLVPIGRPAV--AALDAYLVRGRSELARRGRGTPAIFLNVR 229

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G  L+     + ++      G+    + H LRHSFATHLL  G D+R +Q +LGH  ++T
Sbjct: 230 GGRLSRQSAWQVLQDAAERAGITSGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTT 289

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHP 319
           TQIYT V        + E++ + HP
Sbjct: 290 TQIYTMVTVHA----LREVWAEAHP 310


>gi|240142448|ref|YP_002966958.1| putative site-specific integrase/recombinase [Methylobacterium
           extorquens AM1]
 gi|240012392|gb|ACS43617.1| Putative site-specific integrase/recombinase [Methylobacterium
           extorquens AM1]
          Length = 365

 Score =  105 bits (262), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 145/314 (46%), Gaps = 26/314 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+ L  ERG +  +L  Y    R +  FLA       TI+   +  +TE  A +  R  
Sbjct: 56  WLEALAAERGTATSSLGVYRTSARCWADFLA---SRGTTIEGASRADFTEYLAHLDAR-- 110

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             + + ++    + ++S  ++L   +         +  +K+   LP  L     +  VD 
Sbjct: 111 -HLSEATIAHRRTVVRSLHRFLMAEEHVGYDPTSLVAPMKRPERLPLVLT----IAEVDR 165

Query: 141 VLLHTSHETKWID----------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            LL T+H     D          AR +A+  +LY  G R+SEA++L    I      + +
Sbjct: 166 -LLETAHALARDDTVGLYRQAGYARRAALFEVLYASGTRVSEAVNLPAAAIAPGARAMIV 224

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIR 248
           +GKG K R+V L     +A+  + DL     +++    LF  +R    PL        I+
Sbjct: 225 KGKGGKERLVMLHRRAIEAVEVWRDLAAAYGSVSDTW-LFHSVRNGAAPLTRQSALAEIK 283

Query: 249 QLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +     G+  P   + H LRH+FA+HLLSNG DLRSIQ +LGH  L TT+IY + +++  
Sbjct: 284 EAAVAAGIRNPDRVSPHKLRHAFASHLLSNGADLRSIQELLGHADLGTTEIYLHTDTRRT 343

Query: 307 GDWMMEIYDQTHPS 320
              + +++    P+
Sbjct: 344 HGMVRDLHPLNEPA 357


>gi|270294768|ref|ZP_06200969.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274015|gb|EFA19876.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 294

 Score =  105 bits (262), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 149/306 (48%), Gaps = 23/306 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L  L  ER  SK T++ Y  D    ++ L  + EE +   T   +    +R +I+  
Sbjct: 5   DSFLDYLLHERNYSKGTVEYYRAD----ILELQRFGEEMLGDLTPSDVDAELVREWIASL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   ++ R LS ++++ K+L +R       +  +   KK   LP  L E +   L+
Sbjct: 61  MDKGLASNTINRKLSSVRTYYKFLLRRGKVAVDPLRKVTGPKKKKPLPVFLREGEMNRLL 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D++      E      R+  I+ + Y  G+R+SE + L  +++    S +++ GK +K R
Sbjct: 121 DDMDFGEGFEG----CRDHMIIEMFYATGMRLSELIGLDDKDVDFSASLVKVTGKRNKQR 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-----FRGIRGKPLNPGVFQRYIRQLRRY 253
           ++P    + +++ EY ++       N  +P+     F    GK L   +    +++    
Sbjct: 177 LIPFDEELGRSMREYVNV------RNEAVPVRSDAFFVRKNGKRLYRSIVACLVKRNLSK 230

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +      + H LRH+FAT +L+NG DL SI+ +LGH  L+TT++YT+   +     + ++
Sbjct: 231 VVTVKKRSPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEE----LKKV 286

Query: 314 YDQTHP 319
           Y+Q HP
Sbjct: 287 YNQAHP 292


>gi|224543273|ref|ZP_03683812.1| hypothetical protein CATMIT_02473 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523806|gb|EEF92911.1| hypothetical protein CATMIT_02473 [Catenibacterium mitsuokai DSM
           15897]
          Length = 297

 Score =  105 bits (262), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 149/303 (49%), Gaps = 21/303 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  ERGLS+ T+Q Y  D + F  ++ +          I++   + I A+  + +     
Sbjct: 13  LLFERGLSENTVQGYIRDIKAFYEYIDY---------DIKKFDLSHIDAYFCELKDDGYK 63

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQALTLVDNVLL 143
             S++R +  ++ + ++L + +     +I+   +L K++  LP+ L+ ++ + ++ ++  
Sbjct: 64  VTSIRRKIVSLRQYNEFLSRTR--GMQDIMTQYDLPKTDKKLPKVLSLEEIIKVIKSI-- 119

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
               ++     RN A++ LL   G+RISE + L   +I    S + + GKG+K R++PL 
Sbjct: 120 ---DDSNPAGKRNKAMMLLLINTGMRISELVHLEINDINHSVSNVSVVGKGNKERLIPLD 176

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
                 +  Y        N      LF    G+ +    F   +++L    G+    T H
Sbjct: 177 EETCSYVYSYMQNDRSFFNKKNNQWLFMMNDGRRMTRENFYNILQKLVIGAGVRDHFTPH 236

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            LRH+FAT LL N  DLRSIQ +LGH  +STT IYT+V  +     +++ Y++ HP   +
Sbjct: 237 MLRHTFATTLLENHCDLRSIQVMLGHQDISTTTIYTHVTHRQ----ILDDYNKYHPGNAR 292

Query: 324 KDK 326
           + K
Sbjct: 293 RKK 295


>gi|238022334|ref|ZP_04602760.1| hypothetical protein GCWU000324_02241 [Kingella oralis ATCC 51147]
 gi|237866948|gb|EEP67990.1| hypothetical protein GCWU000324_02241 [Kingella oralis ATCC 51147]
          Length = 300

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 147/299 (49%), Gaps = 20/299 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L +L ++  LS+ TL +Y  D  +    LA    E  +++T       ++ A I   + Q
Sbjct: 17  LDHLWLQERLSQNTLDAYRRDLTKIATRLA---NEHSSLKTT---DAVQLAAAIYVAQEQ 70

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
               RS  R+LS  K    +L++    +++   ++R  K++ +LP  + E+    L++  
Sbjct: 71  P---RSQARALSACKRLYAWLEETGQRSDNPCRDLRTAKQARTLPPIITEQHITDLLNAP 127

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
              T H       R+ A+L L+Y  GLR+SEA+ L    I      +   GKGDK RIVP
Sbjct: 128 DTETPH-----GLRDKALLELIYATGLRVSEAVGLQLNEINLQSGMVNTIGKGDKQRIVP 182

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +       +  Y       L  N +   +F   +   ++  +    + +     G+P   
Sbjct: 183 MGEEAVYWLEHYLQHARPALLKNARCEAVFVSQKKTGISRQLAWMAVSRYAEQAGMP-HI 241

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           + H LRH+FATHL+++G DLR +Q++LGH  ++TTQIYT+V ++     + ++ D+ HP
Sbjct: 242 SPHDLRHAFATHLVNHGADLRVVQTLLGHADIATTQIYTHVANER----LKQVVDKFHP 296


>gi|312115313|ref|YP_004012909.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311220442|gb|ADP71810.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 334

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 137/303 (45%), Gaps = 34/303 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  +  ERG S  T+ +Y  D R+   FLA   E      T    +  ++ AF S R  
Sbjct: 20  YLAMMRAERGASANTVAAYAADLREMSRFLAERGE------TFAACARADLEAFFSDRAE 73

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +   S  R LS +K F+ +L   K+  +     +  +K    LP  L   +      +
Sbjct: 74  AGLLANSAARKLSCLKRFMLFLVAEKMRDDDPARLIDGVKARRVLPMTLTIAEV-----D 128

Query: 141 VLLHTSHETKWI-DARNSA---------ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           +LL  +H+     D + S+         +L LLY  GLR+SE + L     + D+  L +
Sbjct: 129 LLLDAAHQAAAFGDPQTSSGRRALRLACLLELLYATGLRVSELVGLPRAAFLGDRKMLTV 188

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG-------VF 243
           +GKG + RI+PL    R  +  + D        + +         K L P          
Sbjct: 189 KGKGGRERIIPLNAKARTVLDCWLDALEAAARADGKAGGAGASASKWLFPSWGEDGHLTR 248

Query: 244 QRYIRQLRRYLGLPLSTTA-----HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           Q++ + L + LG  L   A     H LRH+FATHLL  G DLR +Q++LGH  +STTQIY
Sbjct: 249 QKFAQDL-KALGARLGIDAERLSPHVLRHAFATHLLDRGVDLRVLQTLLGHADISTTQIY 307

Query: 299 TNV 301
           T+V
Sbjct: 308 THV 310


>gi|254522819|ref|ZP_05134874.1| tyrosine recombinase XerD [Stenotrophomonas sp. SKA14]
 gi|219720410|gb|EED38935.1| tyrosine recombinase XerD [Stenotrophomonas sp. SKA14]
          Length = 325

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 145/310 (46%), Gaps = 24/310 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L  +  E GL++ TL SY  D    L  LA + + +     +  +    +  +++ R
Sbjct: 29  QRFLDAIWAENGLARATLDSYRRD----LEGLARWMDGRDG--GLAGIERPGLFDYLAWR 82

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  RS  R LS ++++     +R   +E     +   K    LP+AL E Q     
Sbjct: 83  TRHGWSPRSNARLLSALRAYFADGVRRGERSEDPSALLDPPKLPRLLPKALAESQI---- 138

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            + LL      + +  R+ A+L L+Y  GLR+SE + L   ++   Q  +R+ GKG K R
Sbjct: 139 -DALLAAPDVERPLGLRDRAMLELMYAAGLRVSELVLLPATSVNLRQGVIRVTGKGSKER 197

Query: 199 IVPLLPSVRKAILEYYDLCPFDLN--------LNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +VPL    +  +  Y       L          + Q PLF       L    F   +++ 
Sbjct: 198 LVPLGEESQHWLERYLQQSRPQLVGKGRVQALADGQTPLFVEPTLHALTRQAFWHLVKRH 257

Query: 251 RRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            +  G+ P   + H LRHSFATHLL+ G DLR++Q +LGH  LSTTQIYT V  ++    
Sbjct: 258 AQVAGIDPARISPHGLRHSFATHLLNRGADLRALQMLLGHSSLSTTQIYTLVAREH---- 313

Query: 310 MMEIYDQTHP 319
           + +++ + HP
Sbjct: 314 LQKLHARHHP 323


>gi|293192780|ref|ZP_06609675.1| tyrosine recombinase XerD [Actinomyces odontolyticus F0309]
 gi|292820027|gb|EFF79025.1| tyrosine recombinase XerD [Actinomyces odontolyticus F0309]
          Length = 315

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 146/316 (46%), Gaps = 22/316 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEIRAFIS 76
           ++W+  L +E+G S  T+ +Y  D  ++   +   +  K+ ++ I  R +    +R    
Sbjct: 9   RDWVDYLRVEKGASAHTVSNYRRDVARYAFDM--KSRGKVNVEDISPRDIEDYTMRLASG 66

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           +         S+ R+ + I+   KY              +   ++   LP+AL+      
Sbjct: 67  QVTGTPAAASSVARASAAIRGLHKYALTEGAVGTDAAAQLHAPRQGRHLPKALS------ 120

Query: 137 LVDNV--LLHTSH-ETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MD-DQSTLRIQ 191
            VD V  LL  +H +   I  R++A+L LLY  G R+SEA+SL+  ++ +D D   +R+ 
Sbjct: 121 -VDEVGRLLDAAHADDSPIGLRDAALLELLYATGARVSEAVSLSADDLDLDGDVPVVRLF 179

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQ 249
           GKG K R+VP+      A+  Y       L    +     F   RG  L+       IR+
Sbjct: 180 GKGRKERVVPVGSFAVDALYAYRVRARPALAARGRGSTAFFLNSRGGALSRQSAWTAIRR 239

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                 L    + HTLRHSFATHLL  G  +R +Q +LGH  ++TTQIYT V +      
Sbjct: 240 AAEAAQLGERVSPHTLRHSFATHLLEGGASVREVQELLGHASVATTQIYTQVTAT----V 295

Query: 310 MMEIYDQTHPSITQKD 325
           + E++  +HP     D
Sbjct: 296 LREVFTLSHPRARGTD 311


>gi|187250446|ref|YP_001874928.1| integrase family protein [Elusimicrobium minutum Pei191]
 gi|186970606|gb|ACC97591.1| Integrase family protein [Elusimicrobium minutum Pei191]
          Length = 291

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 137/297 (46%), Gaps = 19/297 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  ER LSK T+ +Y  D   F    AF  E     Q +R      I  +I   + + + 
Sbjct: 10  LSFERQLSKNTIYAYTNDVGDFF---AFCEENNTAPQNVRP---DFIDEYIYHLKQKGLS 63

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            +S+ R    +KSF KYL       E     + + K +  +P  L +++   L+      
Sbjct: 64  PKSVFRKTQAVKSFYKYLIINGDIKEDPCRFLLSPKLTQKIPETLTKEEISRLL------ 117

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           +     + + R   IL L Y CGLR+SE +SL  +++      +   GKG K R +P+  
Sbjct: 118 SFPPKTFAEIRTLTILELFYACGLRVSELVSLRIESVNLKDKWVLAYGKGAKQRFIPIHD 177

Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
              K +LE Y  +   +         +F    GK ++     + +  L R  G+  S   
Sbjct: 178 RAVK-VLEIYLSEREKYLKGKESASEIFINKNGKKISRMSVWKDVNDLGRLAGIERSLHP 236

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           H  RH+FATHLL  G DLRS+Q +LGH  L TTQIYT+++ ++    + E + + HP
Sbjct: 237 HLFRHTFATHLLIGGADLRSLQEMLGHADLQTTQIYTHLDVQS----LKEKHKKFHP 289


>gi|288574964|ref|ZP_06393321.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570705|gb|EFC92262.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 297

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 147/302 (48%), Gaps = 18/302 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L +E G S+ T ++Y  D  Q+  F +    + +   +     Y      +   R
Sbjct: 10  QFLSYLSLELGESQNTCKAYRVDISQWNDFCSRSGRDPVASDSDLYGKY------VHYMR 63

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTLV 138
           +  +   +++R  + +++++ +L        S+ + M  L  +   LP+ L E +   L+
Sbjct: 64  SIDLAPATIQRKCAAVRTWINFLVVEGYV--SDDVPMPPLPDRPKRLPQLLTEGEVSRLL 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                       ++D R+ AIL  LYGCGLR SE  SL  +++  +++++ I GKG+K R
Sbjct: 122 GAC---DGDPMGYLDFRDRAILETLYGCGLRASELCSLKLRDLQFERASMIIFGKGNKER 178

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VPL+ S R+ I  + D     +       +F    G+P+      + IR+     G+  
Sbjct: 179 MVPLVGSARRWIERFIDEARPSVAKEGVDQVFLSRNGRPMRRESLWKMIRKRGSRAGISQ 238

Query: 259 ST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           S    H +RH+ A+HLL  G DLR++Q  LGH  + TT+ Y + + +     + ++YD++
Sbjct: 239 SRLHPHVIRHTVASHLLRRGMDLRTLQEFLGHESIGTTEKYLHFDQE-----LRDVYDRS 293

Query: 318 HP 319
           HP
Sbjct: 294 HP 295


>gi|86741839|ref|YP_482239.1| tyrosine recombinase XerD [Frankia sp. CcI3]
 gi|86568701|gb|ABD12510.1| Tyrosine recombinase XerD [Frankia sp. CcI3]
          Length = 443

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 150/338 (44%), Gaps = 58/338 (17%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L +LE ERGL++ ++ +Y  D R++   L+        + ++  +   E+  F +  
Sbjct: 94  ERYLHHLEGERGLARNSVLAYRRDLRRYCDHLS-----ACGLPSLDAVGEAEVAGFAAVL 148

Query: 79  RT-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           RT       +   S+ R L  ++S  ++        E     +R       LP+AL+  Q
Sbjct: 149 RTGDDTHPPLAAASVARMLVAVRSLHRFAADEGDVPEDVSRPVRPPTPPRRLPKALSIDQ 208

Query: 134 ALTLVDNVLL-------------HTSHETKWIDA-------RNSAILYLLYGCGLRISEA 173
            + ++                    S   + ++        R +A+L LLYG G RISEA
Sbjct: 209 VVAVLAAAAGAPPPGSPPPSGRPQPSGRPQPVEPAEAVRRLRATALLELLYGTGARISEA 268

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
           + L   ++  + +++R+ GKG + RIVPL      A+ +Y         L +  P     
Sbjct: 269 VGLDVDDLDLEAASVRLHGKGGRDRIVPLGRYAIAAVADY---------LRVGRPTLVAP 319

Query: 234 RGKPLNPGVF--QRYIRQLRRYLGLPLSTTA----------HTLRHSFATHLLSNGGDLR 281
           R     P VF  +R  R  R+     L T A          H LRHSFATHLL  G D+R
Sbjct: 320 RS---GPAVFLSRRGNRLSRQSAWSVLRTAALAAGVEGVSPHVLRHSFATHLLDGGADVR 376

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            +Q +LGH  +STTQIYT V      D + E+Y  +HP
Sbjct: 377 VVQELLGHASVSTTQIYTLVTV----DRLREVYAASHP 410


>gi|85708393|ref|ZP_01039459.1| integrase [Erythrobacter sp. NAP1]
 gi|85689927|gb|EAQ29930.1| integrase [Erythrobacter sp. NAP1]
          Length = 295

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 146/304 (48%), Gaps = 25/304 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L  ERG +  TL +Y  D            EE   +  + + S    RA ++K 
Sbjct: 6   RAFLDMLAAERGAAANTLAAYRRDLDG--------AEE--ALGDLDKAS----RAAVAKL 51

Query: 79  RTQ--KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             Q   +   ++ R  S ++ F  +        +     +   +    LP+ L+ +   T
Sbjct: 52  SAQWASLAPSTVARKASALRQFFGFAVDEGWREDDPSGALPKPRTRRPLPKILSHEAVET 111

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+    L  ++  +    R  A+L +LYG GLR +E +SL   ++  D   + ++GKG +
Sbjct: 112 LLQRAELE-ANSGQPTALRQLALLEMLYGSGLRATELVSLPLVSVPRDAPLITVKGKGGQ 170

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+VP+    ++A+ E+  + P D       P  RG  GK L+     + +++L     L
Sbjct: 171 ARMVPVSERAKEALAEWVKVRPSDPPTGHLFP-SRG--GKHLSRVRLFQILKELAVRADL 227

Query: 257 -PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            P   + H LRH+FATHLL  G DLR +Q++LGH  ++TTQIYT+V++      ++E+ +
Sbjct: 228 DPAGISPHVLRHAFATHLLEGGADLRVLQTLLGHADIATTQIYTHVDAAR----LVELVN 283

Query: 316 QTHP 319
             HP
Sbjct: 284 SRHP 287


>gi|300726218|ref|ZP_07059671.1| tyrosine recombinase XerC [Prevotella bryantii B14]
 gi|299776415|gb|EFI72972.1| tyrosine recombinase XerC [Prevotella bryantii B14]
          Length = 293

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 146/303 (48%), Gaps = 17/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  L+ E   S+ T+QSY  D R F  +     ++ ++ +++       +R +I   
Sbjct: 4   EDFLDYLQFELNRSERTVQSYGDDLRAFQSYFE-GLDDHLSWESVDS---DVVRGWIELM 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S+ R LS +++F ++   RK      +  ++  K+   LP+ L E +   L+
Sbjct: 60  MDKGNSATSINRRLSALRTFYRFALSRKRVESDPVHMIKGPKRGKPLPQFLKENEMNALL 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D  +    H   + D R+  I+   Y  G+R+SE + L   ++   +  L++ GK +K R
Sbjct: 120 DTAM----HGESFYDVRDRTIIMTFYETGIRLSELIGLDDNDVDFQKGELKVTGKRNKQR 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ--LRRYLGL 256
           I+P    +  A+  Y  L   +   N  L LF   +G  LN G   RY+ Q  L R   L
Sbjct: 176 IIPFGNELASALTIYMKLRD-EFIGNTSLALFVSNKGCRLN-GNQVRYLVQKNLSRVSTL 233

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FAT +L++   L S++ +LGH  LSTT+IYT+   +     +  IY  
Sbjct: 234 K-KRSPHVLRHTFATAMLNHEAGLESLKKLLGHASLSTTEIYTHTTFEQ----LKRIYSN 288

Query: 317 THP 319
            HP
Sbjct: 289 AHP 291


>gi|266620141|ref|ZP_06113076.1| tyrosine recombinase XerD [Clostridium hathewayi DSM 13479]
 gi|288868265|gb|EFD00564.1| tyrosine recombinase XerD [Clostridium hathewayi DSM 13479]
          Length = 323

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 139/290 (47%), Gaps = 13/290 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +++ +L +ER LS  T+ +Y+ D      +L     E I   +I          F+  + 
Sbjct: 14  DFINSLSLERNLSGKTIYAYKSDLLCMFTWLNENKYESINPHSISDY-------FLYLQN 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLKKSNSLPRALNEKQALTLV 138
            +K+  RS++R    IK F  Y+   K   E  +  + R  +   SLPR L++ +   L+
Sbjct: 67  NKKLSPRSIRRKYVSIKQFFHYINVEKGVNEIFMKFSSRKFQLPKSLPRTLSKMEVNQLI 126

Query: 139 DNVLL-HTSHETKW---IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             V   + S  T +   +  R+  I+ +L+  GLRI E  +L  ++    +++  I GKG
Sbjct: 127 ATVSKEYKSASTDFYRRLCLRDMCIIEILFCLGLRIGEVAALNIEDYDSGEASFLIHGKG 186

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +K R++ +        L+ +     + NL     LF    GK L+    +    + R   
Sbjct: 187 NKERMLFISSITVNQKLQKWIRTRQEFNLQDD-ALFVNKYGKRLSIYSIENLFYKYRELA 245

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            +    T H LRHSFAT LL+NG D+R++Q ILGH  + TTQIYT V+ K
Sbjct: 246 HINSEATPHYLRHSFATQLLNNGADIRAVQDILGHSSIVTTQIYTEVSLK 295


>gi|308235890|ref|ZP_07666627.1| site-specific tyrosine recombinase XerC [Gardnerella vaginalis ATCC
           14018]
 gi|311115014|ref|YP_003986235.1| tyrosine recombinase XerC [Gardnerella vaginalis ATCC 14019]
 gi|310946508|gb|ADP39212.1| tyrosine recombinase XerC [Gardnerella vaginalis ATCC 14019]
          Length = 357

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 141/324 (43%), Gaps = 52/324 (16%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLA---FYTEEKITIQTIRQLSYTEIRAFISK 77
           ++  L   +GL   TL++Y  D  Q L +           ++   +RQ  Y     +++K
Sbjct: 29  YIDYLRSNKGLGSRTLRAYRVDVLQCLEWCGVNDLSDLNSVSTSVLRQWMY-----WLNK 83

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     SL R +  ++ F  +     + + +    +   K  N LP  L+E QA  L
Sbjct: 84  NHARS----SLARKVVAVRGFFAWTTHVGLISANPAQILNTPKIVNELPTVLDEAQAEKL 139

Query: 138 VD-----------------------------------NVLLHTSHETKWIDA-RNSAILY 161
           +D                                    +   T  + +++ A RN+AIL 
Sbjct: 140 LDCAEDRSEDYAVDKSPATEHQENTPLKSQIKMRIKSKIKSQTKTKQEYVIALRNAAILE 199

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           LLY  G+R+ E   L  Q++  +  T+++ GKG+K R+VP      KA  ++ D     L
Sbjct: 200 LLYATGMRVGELTGLNVQDMDFENHTVKVTGKGNKQRVVPFGVPAAKACKKWLDCGRSAL 259

Query: 222 ---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
              +      LF G+R K ++  + +  + +      +P     H LRHS ATH+L+ G 
Sbjct: 260 QEKSAASSQALFLGVRAKRIDQRIVRSIVHEAAAAANVP-DVAPHALRHSAATHMLNGGA 318

Query: 279 DLRSIQSILGHFRLSTTQIYTNVN 302
           DLR +Q +LGH  L+TTQ YT+V+
Sbjct: 319 DLREVQELLGHSSLNTTQRYTHVS 342


>gi|307297306|ref|ZP_07577112.1| integrase family protein [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916566|gb|EFN46948.1| integrase family protein [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 299

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 142/300 (47%), Gaps = 33/300 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + +N+E  R +S  T+ +Y  D   F +FL    E  I  +++++    +I  F+ + 
Sbjct: 8   ERFKENMEFVRNMSSNTVAAYLSDLHHFELFL---NERGIDYKSVKR---KDIELFVKEY 61

Query: 79  RTQKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
              K   +     ++ R+LS I+SF  +L      ++     ++N K    +P  +   +
Sbjct: 62  SQGKYSRKRPSATTVARNLSTIRSFYTFLYISGTVSKVPTELIKNPKTRRRIPDYITHDE 121

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRI-Q 191
            + ++      +S  +  +  RN AI+ ++Y CGLR+SE   L   ++ M +   +RI  
Sbjct: 122 VMEIL------SSFRSTNLGKRNKAIVAIMYFCGLRVSEVCKLRLGDLRMGNSPAVRIMS 175

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-------FRGIRGKPLNPGVFQ 244
           GKG++ R VP+   V   + EY       L +  + P+       F G RG+P+   V  
Sbjct: 176 GKGNRDREVPMNDQVLSIVKEY-------LQIRREFPMSEYEDHVFIGTRGEPMARNVIP 228

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + +    +Y+        H  RHSFAT LL  G  ++ +Q +LGH  LSTT IY ++  K
Sbjct: 229 KVLNTQVKYVYPEKRVHPHLFRHSFATQLLQKGASIKIVQELLGHANLSTTSIYLHITDK 288


>gi|87199919|ref|YP_497176.1| phage integrase [Novosphingobium aromaticivorans DSM 12444]
 gi|87135600|gb|ABD26342.1| phage integrase [Novosphingobium aromaticivorans DSM 12444]
          Length = 293

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 142/313 (45%), Gaps = 45/313 (14%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECD---TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +N+L  L  +RG +  TL +Y  D     + +  LA    E +    I   +++++ A  
Sbjct: 10  ENFLAMLAAQRGAAANTLAAYRRDLAGAAEVIGPLATAGREDLARLAI---AWSDLAA-- 64

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                      SL R  S ++ F  +L    +  E     +   K    LPR L+  Q  
Sbjct: 65  ----------SSLARKSSALRQFYGFLVDEGMREEDPSSALPRPKTRRPLPRLLDHGQV- 113

Query: 136 TLVDNVLLHTSHETKWIDARNS--------AILYLLYGCGLRISEALSLTPQNIMDDQST 187
                 L  T+ E    DAR+         A+L LLYG GLR +E +SL    I  D   
Sbjct: 114 ----EALFRTAEE----DARSGTPEAARMLALLELLYGSGLRATELVSLPLAAIPRDAPL 165

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           L I GKG   R+VP+     +A+ ++  L           P  RG  G      +FQ  +
Sbjct: 166 LTITGKGGVQRMVPVSARATRALADW--LVARGKGGRFVFPSPRG--GHLSRVRLFQ-LL 220

Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           R L    GL P   + H LRH+FATHLL  G DLR +Q++LGH  ++TTQIYT+V++   
Sbjct: 221 RDLALRAGLDPEKVSPHVLRHAFATHLLEGGADLRVLQTLLGHADIATTQIYTHVDAAR- 279

Query: 307 GDWMMEIYDQTHP 319
              ++ + ++ HP
Sbjct: 280 ---LVTLVNERHP 289


>gi|295396788|ref|ZP_06806923.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030]
 gi|294970372|gb|EFG46312.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030]
          Length = 312

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 152/320 (47%), Gaps = 27/320 (8%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP+  + +L++    +L  L++ERG S+ T+ +Y  D  +++ +LA        +  +  
Sbjct: 11  LPDAPA-DLIRPVSEYLTYLQLERGSSRNTVDAYARDLAKYVTYLA-----DTGVNDLGS 64

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           ++   +  FI     Q     S  R    ++  L +    +    S   +++    +  L
Sbjct: 65  VTSEHVAGFIEHIAHQNFAVTSRARITVAVRR-LHHFTAGETGGTSPADDVQPPTDTMRL 123

Query: 126 PRALNEKQALTLVDNV--LLHTSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQN 180
           P+AL+       VD V  ++H + + +  D    R  A++  LY  G RISEA+ +   +
Sbjct: 124 PKALS-------VDQVSRIIHAAGDPQSADPAQLRAVALIEFLYATGARISEAVGVDRDD 176

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLN 239
           +  D    R+ GKG+K R+VPL     +A+  +  L           P +F   RG  L+
Sbjct: 177 VDVDAGIARVYGKGNKERLVPLGSHAIEALGAW--LTRGRPAWAASSPAVFLNARGGRLS 234

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                  +++      +P   TAH+LRHS ATHL+  G D+R +Q +LGH  ++TTQIYT
Sbjct: 235 RQSAWAIVKKAAEIADVP-RVTAHSLRHSCATHLVEGGADIRIVQELLGHSSVTTTQIYT 293

Query: 300 NVNSKNGGDWMMEIYDQTHP 319
            V S+     + E+Y  THP
Sbjct: 294 QVTSQA----LKEVYASTHP 309


>gi|289707069|ref|ZP_06503398.1| site-specific tyrosine recombinase XerC [Micrococcus luteus SK58]
 gi|289556207|gb|EFD49569.1| site-specific tyrosine recombinase XerC [Micrococcus luteus SK58]
          Length = 373

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 128/270 (47%), Gaps = 26/270 (9%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           +  +  +R +++      +   +L R ++ +++F  +L++  +  +   L +R+ +   +
Sbjct: 113 RAGHRGLRGWLAAMSGAGLARATLARRVAAVRTFTAWLRREGLRADDPALRLRSPRPEGT 172

Query: 125 LPRALNEKQALTL-------VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           LP  L E+QA  L       VD            +  R++A+L LLY  G R++E  +L 
Sbjct: 173 LPHVLQEQQARRLLAAAQERVDAAAAGDDPVAHALALRDAALLELLYATGARVAELSALD 232

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGK 236
             ++   +  +R+ GKGD+ R VP      +A+  +  L    L      P LF G RG 
Sbjct: 233 VDDLEAGRGVVRLTGKGDRQRTVPYGAPAGRALQAWQRLGRPRLARPDSGPALFLGARGG 292

Query: 237 PLNPGVFQRYIRQLR-------RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
            L        +RQ R         LG   +   H LRH+ ATHLL  G DLRS+Q +LGH
Sbjct: 293 RLG-------VRQARTVVDRALEGLGDTAARGPHALRHTAATHLLDGGADLRSVQELLGH 345

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
             L TTQ+YT+V+     D + E Y Q HP
Sbjct: 346 ASLRTTQVYTHVSI----DRLREGYRQAHP 371


>gi|150026173|ref|YP_001296999.1| integrase/recombinase [Flavobacterium psychrophilum JIP02/86]
 gi|149772714|emb|CAL44197.1| Integrase/recombinase [Flavobacterium psychrophilum JIP02/86]
          Length = 347

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/216 (35%), Positives = 111/216 (51%), Gaps = 22/216 (10%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           ++ IK + K +K+ KI  +     +   K+S  LP  L+ K+ + L+     +  H+T  
Sbjct: 141 VNAIKLYFKTIKEVKIEVD----KIHRPKRSKLLPNVLS-KEEIKLILEAHSNIKHKT-- 193

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210
                  +L L+Y CGLR SE L L P +I   +  + I Q KG K RI PL P +   +
Sbjct: 194 -------MLSLIYSCGLRRSELLHLKPTDIDSKRGIVIIRQSKGKKDRIAPLSPKILVML 246

Query: 211 LEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
            EYY       N   +  LF G I G+  +    Q  ++Q      +    + H LRHS+
Sbjct: 247 REYYS------NYKPKSWLFEGQIPGETYSEKSLQNVLKQALEKAKIAKPVSLHWLRHSY 300

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           ATHLL +G DLR IQ +LGH    TT+IYT+V++KN
Sbjct: 301 ATHLLESGTDLRYIQELLGHSSTKTTEIYTHVSTKN 336


>gi|160934246|ref|ZP_02081633.1| hypothetical protein CLOLEP_03117 [Clostridium leptum DSM 753]
 gi|156866919|gb|EDO60291.1| hypothetical protein CLOLEP_03117 [Clostridium leptum DSM 753]
          Length = 314

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 153/303 (50%), Gaps = 29/303 (9%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFL-------AFYTE------EKITIQTIRQLSYTEI 71
           +E  +G S  T+Q Y  D R F  ++       A  TE      + ITI  +  +S T++
Sbjct: 1   METIKGKSPKTVQEYFFDLRTFFRYMKIKKNLTAADTEFSEIPIDDITIDFLSMVSLTDV 60

Query: 72  RAF---ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN-ILNMRNLKKSNSLPR 127
             F   ++  R  K   R+  R  + +++F +YL  +    + N +  +   K+  SLP+
Sbjct: 61  YEFMNFVTIERENKNAARA--RKSASLRAFFQYLTNKTHQLKENPVQELETPKQKKSLPK 118

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L  +Q++ L++ V             R+  IL L   CGLR++E + L   +I  D  T
Sbjct: 119 YLTLEQSIDLLNAV-------DGPFRERDYCILTLFLNCGLRLAELVGLNLNDIRPDH-T 170

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           +R+ GKG+K R++ L  + +KAI EY  + P  ++++ +  LF     K L     Q  +
Sbjct: 171 MRVTGKGNKERMIYLNSACQKAIEEYLKVRPNPMSVSDKKALFISHLNKRLGRQAVQNIV 230

Query: 248 RQLRRYLGLP-LSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSKN 305
           ++  + +GL     +AH LRH+ AT +  +G  D+R ++ ILGH  L TT+IYT+++++ 
Sbjct: 231 QKYLKKIGLDGQGYSAHKLRHTAATLMYQHGNVDIRVLKDILGHQNLGTTEIYTHLSNQQ 290

Query: 306 GGD 308
             D
Sbjct: 291 MED 293


>gi|291527468|emb|CBK93054.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 308

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 149/303 (49%), Gaps = 27/303 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N+++    ++ L   TL++Y+ D RQF         E+I+I  I  ++ + + ++I+  
Sbjct: 9   KNYIEYCTAQKRLDTKTLKAYKIDLRQF--------SEQISITEIEYITTSVLESYITNL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN-----LKKSNSLPRALNEKQ 133
             Q+   +S+KR ++ IK+F  YL+ + I     ILN  N      ++   LP+ +  K 
Sbjct: 61  H-QQYSPKSVKRKIASIKAFFHYLEYKDII----ILNPFNKLQIKFREPVILPKTIPLK- 114

Query: 134 ALTLVDNVLLHTSHET-----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
            L ++ N      H+T     K    R+ A+L LL+  G+RISE  S+  QN+    + +
Sbjct: 115 TLEVLFNAAYAKYHKTTSPCQKRKTLRDIAVLELLFATGIRISELCSILLQNMDLQNNII 174

Query: 189 RIQGKGDKIRIVPLL-PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
            I GKG K R++ +  P+V   + +YY    +   ++     F    G  L+    +  I
Sbjct: 175 LIHGKGSKERLIHICDPNVLNILNQYYT--EYYSQISACGYFFVNNTGNRLSDQSVRDMI 232

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +  R   +    T H  RH+FAT LL    D+R IQ++LGH  ++ T+IYT+V      
Sbjct: 233 NKYCRIADIDYHITPHMFRHTFATQLLEENVDIRYIQTMLGHSSINVTEIYTHVTISKQK 292

Query: 308 DWM 310
           D +
Sbjct: 293 DIL 295


>gi|86747659|ref|YP_484155.1| tyrosine recombinase XerD [Rhodopseudomonas palustris HaA2]
 gi|86570687|gb|ABD05244.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris HaA2]
          Length = 347

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 136/313 (43%), Gaps = 24/313 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  +  E+G S  TL +Y  D    L  L+ Y   +   ++I       +R +++   T
Sbjct: 41  FLDMIAAEQGASANTLDAYRRD----LADLSHYLGRRR--KSIASADTEALRGYLADLDT 94

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL---NEKQALTL 137
           +     S+ R LS ++   ++L   +I  +     +   K+   LP+ L   +  + L  
Sbjct: 95  RGFASTSVARRLSALRHLFRFLLSERIRVDDPAAILSGPKRGRGLPKVLSIADVDRLLGC 154

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                           AR   +L +LY  GLR+SE ++L       D   + ++GKGDK 
Sbjct: 155 ARQEADAAEGAAGLRAARLYCLLEVLYATGLRVSELVALPRTAARGDARMIVVRGKGDKE 214

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV----------FQRYI 247
           R+VPL  S + A+  Y                      K L P            F R +
Sbjct: 215 RLVPLNGSSKAAMTRYLATAAAAEKAAAGGKKTAAPASKWLFPSFGESGHLTRQHFARDL 274

Query: 248 RQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           ++L    GLP    + H LRH+FA+HLL NG DLR +Q++LGH  +STTQIYT+V     
Sbjct: 275 KELAARAGLPPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVE--- 331

Query: 307 GDWMMEIYDQTHP 319
            D +  +    HP
Sbjct: 332 -DRLKSLVRDLHP 343


>gi|115522171|ref|YP_779082.1| tyrosine recombinase XerD [Rhodopseudomonas palustris BisA53]
 gi|115516118|gb|ABJ04102.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris
           BisA53]
          Length = 326

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 138/309 (44%), Gaps = 43/309 (13%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L  E+G  K TL +Y  D      FL           ++       +RA++     
Sbjct: 15  FLDMLAAEQGAGKNTLDAYRSDLADLAAFLGHAK------TSLSGADTHALRAYLIDLDA 68

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     S+ R LS ++   ++L   ++  +     +   K+   LP+ ++    +  VD 
Sbjct: 69  RGYKSASVARKLSALRHLFRFLLTERVRADDPAAILSGPKRGRGLPKVMS----IADVDR 124

Query: 141 VLLHTSHETKWID--------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +L H     +           AR   +L +LY  GLR+SE +SL       D   + ++G
Sbjct: 125 LLEHAKRLAEAPGRAGEQVRAARLYCLLEVLYATGLRVSELVSLPVSAARRDARMIVVRG 184

Query: 193 KGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGV--------- 242
           KG+K R+VPL  S ++A+  Y + +   D   + +    +G + KP              
Sbjct: 185 KGNKERLVPLNESSKRAMAAYLEAIAAQDRERDKE----KG-KAKPGKAAAQKWLFPSSG 239

Query: 243 ---------FQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                    F R +++L    GL     + H LRH+FA+HLL NG DLR +Q++LGH  +
Sbjct: 240 ESGHLTRQHFARELKELAAAAGLSARLISPHVLRHAFASHLLHNGADLRIVQTLLGHTDI 299

Query: 293 STTQIYTNV 301
           STTQIYT+V
Sbjct: 300 STTQIYTHV 308


>gi|255020691|ref|ZP_05292753.1| Tyrosine recombinase xerC [Acidithiobacillus caldus ATCC 51756]
 gi|254969927|gb|EET27427.1| Tyrosine recombinase xerC [Acidithiobacillus caldus ATCC 51756]
          Length = 317

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 136/290 (46%), Gaps = 20/290 (6%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97
           +Y  D   +  FLA     +  I  I  +    +R FI + R + +  RSL+R  + +++
Sbjct: 25  AYRADLHLWQEFLA-----EQGIDHIESVQAEHLRHFIRRERARGVAIRSLRRRFAALRA 79

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH-------TSHETK 150
             ++L+++          +R  K     P  L   QA  L+D             + +T 
Sbjct: 80  LYRHLQRQHPQLPDPSRYLRLPKLEQHFPDWLTVDQAQQLLDGPTSSDGGPAQPATAQTH 139

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
           +   R+ A++ LLY   LR+SE +++   ++    S LR+ GKG K R+VP+   V    
Sbjct: 140 FAMTRDRAMMELLYSSALRVSELVAIDLDHLDLAGSWLRVFGKGGKERMVPV-GQVALTA 198

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLSTTAHTLRHSF 269
           L  Y      +       LF   RG  L+    QR +    R  LG  L    HTLRHS 
Sbjct: 199 LRTYLPARAAVAAAEVKALFLNQRGGRLSVRSVQRIVDGWGRDRLGQALHP--HTLRHSA 256

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           A+HLL + GDLR++Q  LGH  ++TT IYT+++ ++    +  +YD  HP
Sbjct: 257 ASHLLQSSGDLRAVQDFLGHAGIATTAIYTHLDHQH----LAAVYDSAHP 302


>gi|308125862|ref|ZP_07663544.1| tyrosine recombinase XerC [Vibrio parahaemolyticus K5030]
 gi|308111049|gb|EFO48589.1| tyrosine recombinase XerC [Vibrio parahaemolyticus K5030]
          Length = 266

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 136/269 (50%), Gaps = 11/269 (4%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           ++ ++   Q+    +R    K   + +   SL   LS ++SF  +L  R   + +    +
Sbjct: 7   EMGLKDWSQVDAGWVRQLAGKGMREGMKASSLATRLSSLRSFFDFLILRGEMSANPAKGV 66

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              +K   LP+ L+  +      N LL  + +   +  R+ A++ L+YG GLR++E +S+
Sbjct: 67  SAPRKKRPLPKNLDVDEV-----NQLLEVNEDDP-LAIRDRAMMELMYGAGLRLAELVSV 120

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
             +++      LR+ GKGDK R VP      + + ++  +   DL    +  LF    G 
Sbjct: 121 DVRDVQLRSGELRVIGKGDKERKVPFSGMATEWVGKWLRVRG-DLAAPGEPALFVSKLGT 179

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            ++    Q+ + +  +   +    + H LRHSFATH+L +  +LR++Q +LGH  +STTQ
Sbjct: 180 RISHRSVQKRMAEWGQKQSVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQ 239

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           IYT+++ ++    + + YDQ HP   +K+
Sbjct: 240 IYTHLDFQH----LAQAYDQAHPRARKKN 264


>gi|288556218|ref|YP_003428153.1| integrase family protein [Bacillus pseudofirmus OF4]
 gi|288547378|gb|ADC51261.1| integrase family protein [Bacillus pseudofirmus OF4]
          Length = 362

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 160/333 (48%), Gaps = 31/333 (9%)

Query: 1   MEGNNLPEIVSFELLKERQN--WLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTE 55
           ++ + LPE +  +  K  Q   ++Q   I R   G SK T+Q Y  D   F  ++   +E
Sbjct: 16  LKTDFLPEAIKQQYRKIDQLPLFIQQYLISRVSLGYSKQTIQRYIYDYHYFFHYVKRVSE 75

Query: 56  E------KITIQTIRQLSYTEIRAFISKRRTQKIGD-RSLKRSLSGIKSFLKYLKKRKIT 108
           +       +T++   Q+    I  +I+    +   + R++ R +S ++S   YL K+  T
Sbjct: 76  DPSFQPAAVTLKDFLQIEKAAIEHYITYLSLEVENEPRTINRKISALQSLFDYLVKKGET 135

Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS---HETKWID---ARNSAILYL 162
           T + +L +   K     P  L   +A  L+  V   +S    + K+ +   AR+ A++YL
Sbjct: 136 TTNPVLGVERPKVGKRDPVFLTINEAQLLLKAVKDTSSLSFRQKKYAEKLLARDYAVIYL 195

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF--- 219
           L   GLRISE  ++  ++   +++ L++QGKG+K R +PL       +  Y D  P    
Sbjct: 196 LISSGLRISELANVKMKDFDKEENILKVQGKGNKERSIPLSYETIDVLTYYLDSLPIKSR 255

Query: 220 ----DLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYLGLPLS-----TTAHTLRHSF 269
               + +L I          K +     Q+ I RQL R      S      TAH LRHSF
Sbjct: 256 PKQSEDHLFIGYDFQSQEYTKQVTVSALQKMIQRQLHRAKQYAPSLQHKTITAHKLRHSF 315

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           AT L++ G D+ ++QS+LGH  ++TTQ+Y +V 
Sbjct: 316 ATALVAKGVDVLTVQSLLGHESVATTQVYAHVQ 348


>gi|163741192|ref|ZP_02148584.1| tyrosine recombinase XerD [Phaeobacter gallaeciensis 2.10]
 gi|161385545|gb|EDQ09922.1| tyrosine recombinase XerD [Phaeobacter gallaeciensis 2.10]
          Length = 337

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 121/244 (49%), Gaps = 12/244 (4%)

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           S  +I A++     + +   +  R LS IK   ++       +++  + ++   +  +LP
Sbjct: 62  SRDDIEAYLIACDAEGLARATRARRLSAIKQIYRFAFDEGWRSDNPAIQIKGPGRQKALP 121

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L   +   L+D       + +  +  RN+ ++ LLY  G+R+SE + L       D  
Sbjct: 122 KTLEVIEVDRLLDAARQSGRNLSDRL--RNTCMMELLYATGMRVSELVGLPVAAARGDPR 179

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLP---LF--RGIRGKPL 238
            L + GKG K R+VPL P  R A+  +    D            P   LF  RG  G  L
Sbjct: 180 MLLVLGKGGKERMVPLSPPARDALAAWLTTRDAAEEAAVAKGAAPSRFLFPSRGKSGH-L 238

Query: 239 NPGVFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
               F   I++     GLP  + + HTLRH+FATHLL+NG DLR+IQ++LGH  ++TT+I
Sbjct: 239 TRHRFYLLIKEFAVAGGLPPEAVSPHTLRHAFATHLLTNGADLRAIQALLGHADIATTEI 298

Query: 298 YTNV 301
           YT+V
Sbjct: 299 YTHV 302


>gi|83749114|ref|ZP_00946119.1| Integrase/recombinase (XerD/RipX family) [Ralstonia solanacearum
           UW551]
 gi|207721732|ref|YP_002252171.1| integrase/recombinase protein [Ralstonia solanacearum MolK2]
 gi|207742496|ref|YP_002258888.1| integrase/recombinase protein [Ralstonia solanacearum IPO1609]
 gi|83724235|gb|EAP71408.1| Integrase/recombinase (XerD/RipX family) [Ralstonia solanacearum
           UW551]
 gi|206586895|emb|CAQ17480.1| integrase/recombinase protein [Ralstonia solanacearum MolK2]
 gi|206593887|emb|CAQ60814.1| integrase/recombinase protein [Ralstonia solanacearum IPO1609]
          Length = 308

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 144/305 (47%), Gaps = 22/305 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +   L +E GL++ TL +Y  D   +  +LA         + I Q    ++  + + R
Sbjct: 20  QRFCDALWLEDGLARNTLDAYRRDLTLYAQWLAGRG------KAIDQTEDDDLADYFAAR 73

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     + +R  +  K F ++  +  +        +   K+   +P+ L+E Q   L+
Sbjct: 74  HEESRASTANRRR-TVFKRFFQWALREHVVGADPSRLLSTAKQPPRIPKTLSEAQVEALI 132

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKI 197
               + T      +  R+ A++ L+Y  GLR+SE ++L    +  ++  +R I GKG K 
Sbjct: 133 AAPDVDTP-----LGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEGVVRVIGGKGGKD 187

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ--LRRYL 254
           R+VP        +  Y  D     L       LF   RG+ +    F   I++  LR  +
Sbjct: 188 RLVPFGAEAGDWLRRYLRDGRTALLGKRTADALFVTARGEGMTRQAFWHLIKRYALRADI 247

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
             PLS   HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++
Sbjct: 248 HAPLSP--HTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARER----LRTLH 301

Query: 315 DQTHP 319
            Q HP
Sbjct: 302 AQHHP 306


>gi|94268395|ref|ZP_01291163.1| Phage integrase [delta proteobacterium MLMS-1]
 gi|93451622|gb|EAT02417.1| Phage integrase [delta proteobacterium MLMS-1]
          Length = 177

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 89/181 (49%), Gaps = 23/181 (12%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
           AR+ AIL LLY  GLR+SE   L    +      +R+ GKG+K R+VP+  +   AI  Y
Sbjct: 1   ARDRAILELLYATGLRVSELAGLDLAQLDLAXGMVRVMGKGNKERLVPMGTAAVAAIEAY 60

Query: 214 YDLCPFDLNLNIQL---------------PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
                F   + ++                PL    RG  L     +R ++      G+  
Sbjct: 61  L----FQRQVLLRQTAGQQKEGKKARGADPLLVNSRGGRLTSRSIERLVKMYAERAGIAA 116

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRHSFATHLL  G DLR +Q +LGH  LSTTQ YT++N     D +  +YDQ H
Sbjct: 117 RVSPHALRHSFATHLLEMGADLRVVQELLGHASLSTTQRYTHLNL----DHLTAVYDQAH 172

Query: 319 P 319
           P
Sbjct: 173 P 173


>gi|313674963|ref|YP_004052959.1| tyrosine recombinase xerd [Marivirga tractuosa DSM 4126]
 gi|312941661|gb|ADR20851.1| tyrosine recombinase XerD [Marivirga tractuosa DSM 4126]
          Length = 299

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 148/311 (47%), Gaps = 24/311 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
            L E +N+LQ   +ER L++ T+ +Y  D  +   FL         +Q    +S T++  
Sbjct: 6   FLTEYKNYLQ---LERSLAENTVAAYVHDVIKLKQFLDISNRNVDPLQ----VSSTDLHN 58

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+       +   +  R +SGIK F KYL    I  ++    +   K    LP  L+  +
Sbjct: 59  FLEYVNELGMTVHTQARVVSGIKGFYKYLVFEDIIEDNPAELLEAPKLGRKLPDVLSFDE 118

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++ ++   T++       R+  +L +LY  GLR++E  SL   N   D   LRI GK
Sbjct: 119 IEQIISSIDRSTAN-----GQRDLTMLEVLYSSGLRVTELTSLKISNTYFDLGFLRIIGK 173

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-----YIR 248
           G K R+VP+  S  K +  Y  L    ++   + P  R I       G   R      I+
Sbjct: 174 GSKERLVPMGKSAAKQLKIY--LTEVRVHQKPK-PEARDIVFLNRFGGAISRISVFTMIK 230

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     G+  + + HT RHSFATHL+  G DLR++Q +LGH  ++TT+IYT+++     D
Sbjct: 231 KQCVMAGIRKNVSPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLDR----D 286

Query: 309 WMMEIYDQTHP 319
           ++ +   + HP
Sbjct: 287 YLSQTLKEFHP 297


>gi|269961534|ref|ZP_06175897.1| tyrosine recombinase XerC [Vibrio harveyi 1DA3]
 gi|269833763|gb|EEZ87859.1| tyrosine recombinase XerC [Vibrio harveyi 1DA3]
          Length = 269

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 136/269 (50%), Gaps = 11/269 (4%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           ++ ++   Q+    +R    K   + +   SL   LS ++SF  +L  R   + +    +
Sbjct: 7   EMGLKDWSQVDAGWVRQLAGKGMREGMKASSLATRLSSLRSFFDFLILRGEMSANPAKGV 66

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              +K   LP+ L+  +      N LL  + +   +  R+ A++ L+YG GLR++E +S+
Sbjct: 67  SAPRKKRPLPKNLDVDEV-----NQLLEVNEDDP-LAVRDRAMMELMYGAGLRLAELVSV 120

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
             +++      LR+ GKGDK R VP      + + ++  +   DL    +  LF    G 
Sbjct: 121 DVRDVQLRSGELRVIGKGDKERKVPFSGMATEWVGKWLRVRG-DLAAPGEPALFVSKLGT 179

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            ++    Q+ + +  +   +    + H LRHSFATH+L +  +LR++Q +LGH  +STTQ
Sbjct: 180 RISHRSVQKRMAEWGQKQSVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQ 239

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           IYT+++ ++    + + YDQ HP   +++
Sbjct: 240 IYTHLDFQH----LAQAYDQAHPRARKRN 264


>gi|162456070|ref|YP_001618437.1| integrase/recombinase [Sorangium cellulosum 'So ce 56']
 gi|161166652|emb|CAN97957.1| integrase/recombinase [Sorangium cellulosum 'So ce 56']
          Length = 358

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 117/243 (48%), Gaps = 22/243 (9%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S+ R +   ++ L+YL++R    ++    +   K    LP  L+   A  +++     T+
Sbjct: 120 SIARKVGAARALLRYLERRGEVDKNAAAQLALPKVRRPLPTFLDVDAAAEVMEIPGAETA 179

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLL 203
                   R+ A+L  LYG GLR+SE   L   ++     D++ +R+ GKGDK RIVPL 
Sbjct: 180 EGL-----RDRAMLETLYGAGLRVSELCGLDLTHVDRRPADRAAVRVVGKGDKERIVPLG 234

Query: 204 PSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
                AI  Y +    L            LF   RG  +     +R    ++RY  L   
Sbjct: 235 SHALAAIERYLERRDELADPTTGARDPRALFLSRRGARIG---VRRVQALVQRYGALGAG 291

Query: 260 TT---AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRH+ ATHLL  G DLR+IQ +LGH  L+TTQ YT+V+     D ++++YD 
Sbjct: 292 RADLHPHALRHTCATHLLDGGADLRAIQKLLGHASLATTQRYTHVSI----DHLLKVYDA 347

Query: 317 THP 319
            HP
Sbjct: 348 AHP 350


>gi|289644810|ref|ZP_06476863.1| integrase family protein [Frankia symbiont of Datisca glomerata]
 gi|289505366|gb|EFD26412.1| integrase family protein [Frankia symbiont of Datisca glomerata]
          Length = 404

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 143/319 (44%), Gaps = 36/319 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L++L  ER  S  T+++Y  D    L  L  Y +E + +     +    +R +++  R 
Sbjct: 100 YLRHLATERDRSPETVRAYRAD----LAHLRGYAQE-VGLDGPTGVDLGVLRGWLAGMRA 154

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV-- 138
           +     +L R  S  + F  +  ++          +   ++  SLP  L   QA  L+  
Sbjct: 155 RGAAATTLARRASVARGFSAFAARQGWLAADVAERLAGPRRPASLPTVLTAAQAWELLAA 214

Query: 139 ----------DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
                           ++     +  R+ A+L LLY    R+SE   L   ++ D++  +
Sbjct: 215 RPRPLPDGGDPPAAGQSAAGQSAVVVRDDAVLELLYATATRVSELCGLDIDDVDDERRLV 274

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           R++GKG + R VP     ++A+  +     P          LF G+RG+ L+P       
Sbjct: 275 RVRGKGGRERAVPFGVPAQRALRNWLAAGRPTLAVAGSGRALFLGVRGRRLDP------- 327

Query: 248 RQLRRYLGLPLST-------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           R +RR L    +T       + H +RHS ATHLL+ G DLRS+Q  LGH   +TTQIYT+
Sbjct: 328 RTVRRILAARTATADGIGPISPHGIRHSAATHLLAGGADLRSVQEFLGHASPATTQIYTH 387

Query: 301 VNSKNGGDWMMEIYDQTHP 319
           V  +     +   ++Q+HP
Sbjct: 388 VTPQR----LRAAFEQSHP 402


>gi|254561653|ref|YP_003068748.1| tyrosine recombinase xerD [Methylobacterium extorquens DM4]
 gi|254268931|emb|CAX24892.1| Tyrosine recombinase xerD [Methylobacterium extorquens DM4]
          Length = 328

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 138/304 (45%), Gaps = 46/304 (15%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L  L  ERG +  TL +Y  D   +L +LA    +    Q        ++RA+I+  
Sbjct: 17  QLFLDMLAAERGAAANTLAAYRRDLDDYLGYLAQGGIDPEEAQA------DQVRAYIASL 70

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   S  R LS I+ F ++L     +       +   +++  LP+ L+  +    V
Sbjct: 71  EPRGLKASSAARRLSCIRGFHRFLYAEGYSETDPTAPVAAPRRAKGLPKVLSVAE----V 126

Query: 139 DNVLLHTSHE------TKWIDARNSA----ILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           D  LL T+ E          +AR++A    +L LLY  GLR+SE ++L        +  L
Sbjct: 127 DR-LLATARERVEAAGDDRAEARSAARMLCLLELLYATGLRVSELVALPRSAAATRERYL 185

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG------- 241
            ++GKG + R+VPL    R+A+  +                +    G  L P        
Sbjct: 186 VVKGKGGRERLVPLTDLAREAMRTHV--------------AYLTAEGAWLFPAESESGHL 231

Query: 242 ---VFQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
               F R ++      GL     + H LRH+FA+HLL NG DLR +Q +LGH  +STTQI
Sbjct: 232 TRQAFARDLKTAAAAAGLRTDRVSPHVLRHAFASHLLQNGADLRIVQELLGHADISTTQI 291

Query: 298 YTNV 301
           YT+V
Sbjct: 292 YTHV 295


>gi|153810458|ref|ZP_01963126.1| hypothetical protein RUMOBE_00839 [Ruminococcus obeum ATCC 29174]
 gi|149833637|gb|EDM88718.1| hypothetical protein RUMOBE_00839 [Ruminococcus obeum ATCC 29174]
          Length = 296

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 153/302 (50%), Gaps = 16/302 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N++  +   +  S+ T  SYE D ++    LA Y   +  I    +++ T+++ ++ + 
Sbjct: 8   ENFIAYMREAKKASQNTEISYERDLKK----LARYLRNQ-KIMDFSEVTKTDLQGYLKEL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + + +   ++ R+++ I++   Y+ +     E     ++  K    +P  L+ ++   L+
Sbjct: 63  QKENLALSTISRNIASIRALYHYMIRTGKMQEDPSETLKPPKLEKKMPEILSVEEVDRLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
               L+T    K I  R++A++ L+Y  G+R+SE + L   +I + Q    I    +K R
Sbjct: 123 KQPNLNTP---KGI--RDNAMMELMYATGMRVSELIHLQITDI-NLQMGYVICHDSEKER 176

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           I+P+    R AIL+Y +    F +    +  LF    GK ++   F + ++      G+ 
Sbjct: 177 IIPIGNVSRNAILQYMEHSRGFFVKNKKESSLFTNCSGKSMSRQGFWKVLKGYAVDAGIH 236

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T HTLRHSFA H+L NG D++S+Q +LGH  +S+TQIY  +N       M ++Y + 
Sbjct: 237 RDITPHTLRHSFAVHMLQNGADVKSVQEMLGHSDISSTQIYLGMNVAR----MRDVYMKA 292

Query: 318 HP 319
           HP
Sbjct: 293 HP 294


>gi|310658549|ref|YP_003936270.1| site-specific tyrosine recombinase xerc [Clostridium sticklandii
           DSM 519]
 gi|308825327|emb|CBH21365.1| putative site-specific tyrosine recombinase XerC [Clostridium
           sticklandii]
          Length = 308

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 156/303 (51%), Gaps = 37/303 (12%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  + +ER  SK T+ SY  D R     L  Y +E+    +I  L+   IR FI   R 
Sbjct: 18  FLAYMTVERNASKFTISSYTSDFR----ILEEYLKERNMKVSIETLNVATIRTFIHFLRL 73

Query: 81  QK-IGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILN-MRNLKKSNSLPRALNEKQALTL 137
           +K   + +++R +  + SF K+L + + I  + N ++ +R  KK   LP  L+EK+  TL
Sbjct: 74  EKEYTNETIRRKIYALGSFFKFLVENEYIGMDKNPMSKIRAPKKEEKLPIYLSEKEIRTL 133

Query: 138 VDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195
           +D ++     +T   DA R+ AI+ L    GLR  E ++L  +++   Q T+++  GKG 
Sbjct: 134 LDTIM-----KTGGKDAIRDKAIISLFAMTGLRRMELINLNWEDVDFGQKTIKVTMGKGK 188

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLN----PGVFQRY 246
           K RI+P+  ++ + +L Y         +N  LP     LF     K +N      +FQ+Y
Sbjct: 189 KQRILPMPETLYQDLLAY---------MNNSLPITNTALFITSNNKRVNFRGMNNLFQKY 239

Query: 247 IRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           I++     GL     T H LRHS+A+ L+  G D+  ++ ++GH   ++T+IY ++N  N
Sbjct: 240 IKRA----GLSGKGYTLHKLRHSYASLLVQQGVDISIVKELMGHSDFNSTKIYVHLNMNN 295

Query: 306 GGD 308
             D
Sbjct: 296 LRD 298


>gi|307718588|ref|YP_003874120.1| DNA integration/recombination/invertion protein [Spirochaeta
           thermophila DSM 6192]
 gi|306532313|gb|ADN01847.1| DNA integration/recombination/invertion protein [Spirochaeta
           thermophila DSM 6192]
          Length = 299

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 143/294 (48%), Gaps = 35/294 (11%)

Query: 24  NLEIERGLSKLTLQSYE--CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           +L  E G S+LT ++Y   C+      F A+     + + T+ + +  E   FI   R +
Sbjct: 15  HLVAELGRSRLTEETYLPLCER-----FCAWLECRGLEVGTVSRRTCEE---FIVDERGE 66

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
               R++ + +S ++SF ++L    +  ++ +  M   + S +LPR L E++   L++ V
Sbjct: 67  GKETRTIAKEMSALRSFFRFLVLEGVRPDNPLEEMDAPRISRTLPRVLEEEEVEILLEAV 126

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
                        R+  +L +LY CGLR+SEA  L  Q+I   +  ++++GKG+K R+VP
Sbjct: 127 DTAPPE-----GMRDRCLLEVLYSCGLRVSEACGLDLQDIFLSEGFVKVRGKGEKERLVP 181

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF-QRYIRQLRR---YLGLP 257
                   +  Y         L+   P+    R       VF  R+ R+L R   ++ L 
Sbjct: 182 FGKEAGHWMRRY---------LSEARPVLAARRPGSREQAVFLNRWGRRLSRKGAWIRLK 232

Query: 258 LSTTA-------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
               A       HT RH+ ATHLL  G +LR +Q  LGH  +STTQIYT+V+++
Sbjct: 233 RLVAASGVDAKLHTFRHTCATHLLHGGANLREVQEFLGHADISTTQIYTHVDAR 286


>gi|170781199|ref|YP_001709531.1| tyrosine recombinase XerC [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169155767|emb|CAQ00888.1| tyrosine recombinase XerC [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 315

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 134/297 (45%), Gaps = 11/297 (3%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           +++ ERG +  T+++Y  D R      A     +  + T   L    +R ++ +    ++
Sbjct: 27  SMDRERGSAAHTVRAYSADLRDLAAHAA-----RQGVTTSAGLDLDVLRDWLWRGSQARL 81

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
              +L R  + ++ F  +L +         + ++  +  + LPR L  +Q ++ +   L 
Sbjct: 82  APATLARRSAAVRGFGAWLLRTGRVDADPAVRLKAPRAGSHLPRVLAREQ-MSALLADLA 140

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
             + +      R+ A + LLY   LR+SE   L   ++   + T+R+ GKGD+ R+VP  
Sbjct: 141 AQAADDDPAALRDLAAIELLYASALRVSELTGLDLGDVDASRLTVRVVGKGDRERVVPFG 200

Query: 204 PSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
               +A+  Y     P  +       LF G RG  L        +  L   +        
Sbjct: 201 VPAAEALDAYVTRGRPALVTPRTGTALFLGARGGRLGSRAVYGLVASLLADIPGSGPQGP 260

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           H LRH+ ATHLL  G DLR++Q +LGH  L TTQIYT+V+ +     +   Y+  HP
Sbjct: 261 HALRHTAATHLLDGGADLRTVQEMLGHASLGTTQIYTHVSIER----LRRSYEGAHP 313


>gi|294787717|ref|ZP_06752961.1| tyrosine recombinase XerD [Simonsiella muelleri ATCC 29453]
 gi|294484010|gb|EFG31693.1| tyrosine recombinase XerD [Simonsiella muelleri ATCC 29453]
          Length = 290

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 146/304 (48%), Gaps = 30/304 (9%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLA-----FYTEEKITIQTIRQLSYTEIRAFIS 76
           L++L ++  L+  TL++Y  D  +    L      F+T + + + +           ++S
Sbjct: 9   LEHLWLQERLAHNTLEAYRRDLSKLAQRLDTQHADFWTADAVALASA---------IYVS 59

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             +      RS  RSLS  K    +L +     +    +++  K  ++LP+ + E+Q   
Sbjct: 60  DEQP-----RSQARSLSACKRLYAWLVETGQREDDPTRDLKATKLPHTLPKIITEQQIEN 114

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L++     T H       R+ A+L L+Y  GLR++EA+ L    I  +   +   GKGDK
Sbjct: 115 LLNMPDCDTPH-----GLRDKALLELMYATGLRVTEAVKLRMNEINLNHGLVNTIGKGDK 169

Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            RIVPL       I +Y     P  L       LF   +   +   +    ++Q    +G
Sbjct: 170 QRIVPLGEEAVHWIGQYVQFSRPQLLKGRRCDELFVSQKKSGMTRQLAWLIVKQYADLVG 229

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  S + H+LRH+FATHL+++G DLR++Q +LGH  ++TTQIYT+V ++     +  I  
Sbjct: 230 IK-SLSPHSLRHAFATHLVNHGADLRTVQMLLGHADIATTQIYTHVANER----LKSIVQ 284

Query: 316 QTHP 319
           Q HP
Sbjct: 285 QHHP 288


>gi|54026110|ref|YP_120352.1| site-specific tyrosine recombinase XerC [Nocardia farcinica IFM
           10152]
 gi|54017618|dbj|BAD58988.1| putative recombinase [Nocardia farcinica IFM 10152]
          Length = 307

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 150/320 (46%), Gaps = 16/320 (5%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           MEG  LPE ++  LL E   + ++L + +  S  T+++Y  D R  L  L  YT      
Sbjct: 1   MEG--LPEDLT-ALLAE---YGRHLRLGQNRSAHTVRAYVGDARALLTHL--YTRSPDA- 51

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             I +L    +R++++          +L R  S +++F  +L           L +   K
Sbjct: 52  -AIGELDLPLLRSWLADLAAAGAARTTLARRASAVRTFTAWLTGTGRLPADPGLRLAAPK 110

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
              +LP  L  +QA+  +D        E   +  R+  I+ +LY  G+R+SE   L   +
Sbjct: 111 AHRTLPAVLARQQAVAAMDAAESGARQEDP-MALRDRLIVEMLYATGIRVSELCGLDIDD 169

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLN 239
           +  ++  +R+ GKG+K R VP       A+ ++     P    +     L  G RG+ L+
Sbjct: 170 VDRERRLVRVLGKGNKERSVPFGGPADLAVEQWLRRGRPAFATVESGRALLIGRRGRRLD 229

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               +  + ++   +        H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT
Sbjct: 230 QRQARTVVHEVVSAIPGAPDLGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYT 289

Query: 300 NVNSKNGGDWMMEIYDQTHP 319
           +V+ +     + +++DQ HP
Sbjct: 290 HVSIER----LKKVHDQAHP 305


>gi|150008883|ref|YP_001303626.1| tyrosine type site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|301311928|ref|ZP_07217850.1| integrase/recombinase XerC [Bacteroides sp. 20_3]
 gi|149937307|gb|ABR44004.1| tyrosine type site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|300830030|gb|EFK60678.1| integrase/recombinase XerC [Bacteroides sp. 20_3]
          Length = 302

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 139/282 (49%), Gaps = 8/282 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L  L  ER  S  T+ +Y  D  QF  ++    E +  +    ++    +R++I   
Sbjct: 4   DDFLNYLRYERNYSNYTIGAYSKDLDQFQRYV---REHREGVFNPGEIDSDFVRSWIVSL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +K+   S+ R LS +KSF K+L KR I + + +  +   K    LP  + + +   L+
Sbjct: 61  MDEKLSPVSVNRKLSSLKSFFKFLMKRGIVSANPLRLVSGPKTKKPLPYFIKDSELEALL 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D        +  +   RN  ++ +LY  G+R SE + +   ++  +   +++ GK +K R
Sbjct: 121 DG----DGFDEDFEGVRNRLVIEMLYDTGMRRSELIGIRNVDVDYEAMQVKVTGKRNKQR 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++P    ++  +L Y ++   ++    +    R   G  L+ G+    +++    + +  
Sbjct: 177 LIPFAEGLKNLMLAYTEVRDREVEAAGEWFFVRK-NGNQLSTGIVYNIVKKQLSEIPMLA 235

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             + H LRHSFAT +L+NG +L +++ +LGH  L++T +YT+
Sbjct: 236 KRSPHVLRHSFATSMLNNGAELNAVKDLLGHSSLASTSVYTH 277


>gi|2251178|emb|CAB10656.1| XerC protein [Mycobacterium leprae]
          Length = 302

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 138/305 (45%), Gaps = 26/305 (8%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           ++L +  G S+ T ++Y  D R  L  L            + QLS   +R++++      
Sbjct: 14  EHLALRCGRSEHTRRAYLGDLRSLLTHLEGRGSR------LDQLSLPVLRSWLATAAGAG 67

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
               +L R +S +K+F  + K R          ++  +   +LP  L + QAL ++    
Sbjct: 68  AARTTLARRISAVKAFTAWAKWRGQLAADPAARLQVPRAYRTLPAVLRQDQALQIM-AAA 126

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
              + +   +  R+  I+ +LY  G+R+SE   L   ++      +R+ GKG+K R  P 
Sbjct: 127 KSGAEQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTRHRLVRVLGKGNKQRTAPF 186

Query: 203 LPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
                 A+  + D   P  + +     L  G RG+ L+       +RQ R  +   ++  
Sbjct: 187 GVPAADALRGWLDDGRPALVTVESGPALLLGSRGRRLD-------VRQARTVVHQTVAVV 239

Query: 262 A-------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           A       H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V        +  ++
Sbjct: 240 AGAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSR----LRVVH 295

Query: 315 DQTHP 319
           DQ HP
Sbjct: 296 DQAHP 300


>gi|124514259|gb|EAY55773.1| putative phage integrase family protein [Leptospirillum rubarum]
          Length = 314

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 147/307 (47%), Gaps = 21/307 (6%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           ++L +  G S  T Q+Y  D      F  F  E  +++      S  ++  + + R  + 
Sbjct: 14  EDLRVASGRSPHTTQAYLLD---LFAFARFLGEHGLSLL---DFSPEDVTHYFAHR--ED 65

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
           +  RS  R LS I+S+ ++LK+R +   + + L +  L ++  LP  L+E++ L L++  
Sbjct: 66  LAMRSRSRVLSAIRSWSRFLKRRGLPAIDPDTLPVPRLPRN--LPGVLDEEEILRLLEAP 123

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
              T         R+ AIL   Y  GLR+SE   LT   +  ++  +R+ GKG K R+  
Sbjct: 124 DPKTDE-----GIRDRAILATFYASGLRVSELAELTLDRLNLNEEQIRVTGKGQKERVA- 177

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            L  +  A L+ Y           +  LF   R            I+   R  G+  S +
Sbjct: 178 FLDGLSCARLKLYLERVRPSTNTAEKTLFLTRRQTGFTRQGLWLLIKGYARQCGIDRSVS 237

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            HTLRHSFATHLLS+G D+RSIQ +LGH  + TT+IYT+V+ +     + E   + HP  
Sbjct: 238 PHTLRHSFATHLLSHGMDIRSIQILLGHSDIQTTEIYTHVDIR----MLAEDLAKYHPRG 293

Query: 322 TQKDKKN 328
            + +K  
Sbjct: 294 KRPEKDG 300


>gi|220929076|ref|YP_002505985.1| site-specific tyrosine recombinase XerC [Clostridium cellulolyticum
           H10]
 gi|219999404|gb|ACL76005.1| integrase family protein [Clostridium cellulolyticum H10]
          Length = 330

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 163/322 (50%), Gaps = 36/322 (11%)

Query: 6   LPEIVSFEL---LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY--------- 53
           +  I  FE+   LK+  N+LQ +   +G SK T+Q Y  D R FL FL  +         
Sbjct: 1   MKNIFDFEMPLVLKDFLNYLQTI---KGKSKNTIQVYFYDLRIFLRFLKIHRNLVDKNIE 57

Query: 54  ------TEEKITIQTIRQLS--YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK-K 104
                 T+  I++     LS  YT + +F+S +R      R+  R ++ +KSF  YL  K
Sbjct: 58  FNSIDITDVDISLLKTVTLSDLYTYM-SFVSNKRDNTSHARA--RKVASLKSFFNYLSTK 114

Query: 105 RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLY 164
            K+   +  + + + K    LPR LN  ++  L+ +V     HE      R+ AI+ +  
Sbjct: 115 AKLLDINPTIELESPKILKRLPRYLNFDESKKLLTSVN-KADHEYAI---RDYAIITIFL 170

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
            CG+R+SE + +   NI D+  TL + GKG K R +PL  +  +AI +Y  + P +  L 
Sbjct: 171 NCGIRLSELVGINLHNIKDN--TLIVFGKGGKERSIPLNRACLQAIDDYLKVRPVN-GLK 227

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGG-DLRS 282
            +  LF   R + ++    Q+ +++     GL P   + H LRH+ AT +   G  D+R+
Sbjct: 228 DKSALFISRRNQRISKESVQKIVKRYITEAGLDPQRYSTHKLRHTAATLMYKYGNVDIRA 287

Query: 283 IQSILGHFRLSTTQIYTNVNSK 304
           +Q ILGH  +STT+IYT+++ +
Sbjct: 288 LQEILGHESISTTEIYTHLDQQ 309


>gi|15827839|ref|NP_302102.1| site-specific tyrosine recombinase XerC [Mycobacterium leprae TN]
 gi|221230316|ref|YP_002503732.1| site-specific tyrosine recombinase XerC [Mycobacterium leprae
           Br4923]
 gi|18202762|sp|Q9CBU0|XERC_MYCLE RecName: Full=Tyrosine recombinase xerC
 gi|13093391|emb|CAC30551.1| integrase/recombinase [Mycobacterium leprae]
 gi|219933423|emb|CAR71695.1| integrase/recombinase [Mycobacterium leprae Br4923]
          Length = 297

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 138/305 (45%), Gaps = 26/305 (8%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           ++L +  G S+ T ++Y  D R  L  L            + QLS   +R++++      
Sbjct: 9   EHLALRCGRSEHTRRAYLGDLRSLLTHLEGRGSR------LDQLSLPVLRSWLATAAGAG 62

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
               +L R +S +K+F  + K R          ++  +   +LP  L + QAL ++    
Sbjct: 63  AARTTLARRISAVKAFTAWAKWRGQLAADPAARLQVPRAYRTLPAVLRQDQALQIM-AAA 121

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
              + +   +  R+  I+ +LY  G+R+SE   L   ++      +R+ GKG+K R  P 
Sbjct: 122 KSGAEQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTRHRLVRVLGKGNKQRTAPF 181

Query: 203 LPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
                 A+  + D   P  + +     L  G RG+ L+       +RQ R  +   ++  
Sbjct: 182 GVPAADALRGWLDDGRPALVTVESGPALLLGSRGRRLD-------VRQARTVVHQTVAVV 234

Query: 262 A-------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           A       H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V        +  ++
Sbjct: 235 AGAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSR----LRVVH 290

Query: 315 DQTHP 319
           DQ HP
Sbjct: 291 DQAHP 295


>gi|255014711|ref|ZP_05286837.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 302

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 139/282 (49%), Gaps = 8/282 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L  L  ER  S  T+ +Y  D  QF  ++    E +  +    ++    +R++I   
Sbjct: 4   DDFLNYLRYERNYSNYTIGAYSKDLDQFQRYV---REHREGVFNPGEIDSDFVRSWIVSL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +K+   S+ R LS +KSF K+L KR I + + +  +   K    LP  + + +   L+
Sbjct: 61  MDEKLSPVSVNRKLSSLKSFFKFLMKRGIVSANPLRLVSGPKTKKPLPYFIKDSELEALL 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D        +  +   RN  ++ +LY  G+R SE + +   ++  +   +++ GK +K R
Sbjct: 121 DG----DGFDEDFEGVRNRLVIEMLYDTGMRRSELIGIRNVDVDYEAMQVKVTGKRNKQR 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++P    ++  +L Y ++   ++    +    R   G  L+ G+    +++    + +  
Sbjct: 177 LIPFAEGLKNLMLAYTEVRDREVEAAGEWFFVRK-NGNQLSTGIVYNIVKKQLSEIPMLA 235

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             + H LRHSFAT +L+NG +L +++ +LGH  L++T +YT+
Sbjct: 236 KRSPHVLRHSFATSMLNNGAELNTVKDLLGHSSLASTSVYTH 277


>gi|86751622|ref|YP_488118.1| Phage integrase [Rhodopseudomonas palustris HaA2]
 gi|86574650|gb|ABD09207.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris HaA2]
          Length = 310

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 138/292 (47%), Gaps = 14/292 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L +  +ER LS  TLQ+Y  D   F  ++     +         +    +RA++    
Sbjct: 9   SFLDHCSVERQLSDHTLQAYGYDLADFAAWVGTRRRKDKAFSAGAPIETDHLRAYLEHMT 68

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALTL 137
            +K+   +++R L+ ++SF +YL+ R   T  N  +   LK  K   LPR L+  +   L
Sbjct: 69  ERKLSAATVRRRLACLRSFFRYLEDRG--TMPNPFDGWRLKLPKRKRLPRTLSRDETTQL 126

Query: 138 VDNVLL-----HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + +        H + E+  +       + L+   G+RI E   +   ++  D + +RI G
Sbjct: 127 LKSARAPGAARHAAPESPSL----CTEIRLMIATGIRIGELCKIASTDVSSDGAAIRIHG 182

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG + R+V +  +  +A L    +      L    PLF    G  L P  F+  +R    
Sbjct: 183 KGSRDRMVYVTDNGLRAELRKLAVL-RQRTLGGDGPLFLNRNGDKLRPHSFRAKLRNFAG 241

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             G+    T H LRH+ AT L+ +G D+R +Q +LGH  ++TT+IYT+V+ +
Sbjct: 242 QAGVRRRVTPHMLRHTAATLLIESGVDIRIVQRLLGHSSIATTEIYTHVSDE 293


>gi|262383756|ref|ZP_06076892.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|298375888|ref|ZP_06985844.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_19]
 gi|262294654|gb|EEY82586.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|298266925|gb|EFI08582.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_19]
          Length = 302

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 139/282 (49%), Gaps = 8/282 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L  L  ER  S  T+ +Y  D  QF  ++    E +  +    ++    +R++I   
Sbjct: 4   DDFLNYLRYERNYSNYTIGAYSKDLDQFQRYV---REHREGVFDPGEIDSDFVRSWIVSL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +K+   S+ R LS +KSF K+L KR I + + +  +   K    LP  + + +   L+
Sbjct: 61  MDEKLSPVSVNRKLSSLKSFFKFLMKRGIVSANPLRLVSGPKTKKPLPYFIKDSELEALL 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D        +  +   RN  ++ +LY  G+R SE + +   ++  +   +++ GK +K R
Sbjct: 121 DG----DGFDEDFEGVRNRLVIEMLYDTGMRRSELIGIRNVDVDYEAMQVKVTGKRNKQR 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++P    ++  +L Y ++   ++    +    R   G  L+ G+    +++    + +  
Sbjct: 177 LIPFAEGLKNLMLAYTEVRDREVEAAGEWFFVRK-NGNQLSTGIVYNIVKKQLSEIPMLA 235

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             + H LRHSFAT +L+NG +L +++ +LGH  L++T +YT+
Sbjct: 236 KRSPHVLRHSFATSMLNNGAELNAVKDLLGHSSLASTSVYTH 277


>gi|224824765|ref|ZP_03697872.1| tyrosine recombinase XerD [Lutiella nitroferrum 2002]
 gi|224603258|gb|EEG09434.1| tyrosine recombinase XerD [Lutiella nitroferrum 2002]
          Length = 296

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 146/303 (48%), Gaps = 23/303 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +  GLS+ TL +Y  D    L+ L    +E+  +  +        RA +     
Sbjct: 11  FLDQLWLSDGLSRNTLSAYRRD----LLKLGARLDEEGGVHLVEAGVADLQRALLLGVEQ 66

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +K   R+  R +S ++ F +YL       +     +   K    LP++L+EK  + L++ 
Sbjct: 67  EKATTRA--RLVSAMRRFYQYLHASGQRPDDPSAALERPKHGQPLPKSLSEKHVVALLEA 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             + T      +  R+ A+L +LY  GLR+SE + LT Q +      +   GKG K R+V
Sbjct: 125 PDVATP-----LGLRDRAMLEVLYATGLRVSELVGLTLQQVDLTSGVVMTLGKGGKERLV 179

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL----RRYLGL 256
           P+    +  +  Y  L      L   +P  +    + L  G+ ++    L     R  GL
Sbjct: 180 PMGEVAQDWLGRY--LATGRPALLTGVPCEQVFVTR-LKAGMTRQMAWHLISGYARRQGL 236

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           P   + HTLRH+FATHL+++G DLR +Q +LGH  +STTQIYT+V  +     +  +++Q
Sbjct: 237 P-PVSPHTLRHAFATHLVNHGADLRVVQLLLGHSDISTTQIYTHVARER----LRRLHEQ 291

Query: 317 THP 319
            HP
Sbjct: 292 HHP 294


>gi|293380240|ref|ZP_06626321.1| putative tyrosine recombinase XerC [Lactobacillus crispatus 214-1]
 gi|290923207|gb|EFE00129.1| putative tyrosine recombinase XerC [Lactobacillus crispatus 214-1]
          Length = 302

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 135/286 (47%), Gaps = 10/286 (3%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E   +L  L+ ER  S  T+ +Y+ D  +   F      E        ++   +I+ ++ 
Sbjct: 7   ELDQFLSYLQNERHYSAKTVLAYQTDLHEAERFW----HENGGFPGWTKVRERDIQVYLQ 62

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               +K+   S  R +S + SF ++L +RK+        +   +    LP+   + +   
Sbjct: 63  HLAERKLARSSQLRKMSSLHSFYRFLTRRKLVAIDPTQGITLRRGEKKLPQFFYQPELKQ 122

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           + D++        K +  RN A+  L Y  G+R+SE  +LT   +  D  T+ + GKG+K
Sbjct: 123 VFDSL-----KGNKPLTMRNLAMFELFYATGMRVSEVSNLTLNQLDLDLQTILVHGKGNK 177

Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R V      +K+++ Y +   P  L  + +  +F   +G  +     +  +++     G
Sbjct: 178 DRYVAFDDKTKKSLIAYLENARPLLLKNDDEQHVFLNNQGTGITSRGIETVMQKTFNQAG 237

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +      H LRHSFAT +L+NG DLRS+Q +LGH  LS TQIYT+V
Sbjct: 238 ISGKVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHV 283


>gi|240170150|ref|ZP_04748809.1| site-specific tyrosine recombinase XerD [Mycobacterium kansasii
           ATCC 12478]
          Length = 313

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/326 (27%), Positives = 144/326 (44%), Gaps = 25/326 (7%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + +  L  + Q +L +L IERG++  TL SY  D R++   L     E   I  +  +  
Sbjct: 1   MTTLTLDTQLQGYLDHLAIERGVAANTLSSYRRDLRRYTKHL-----EDRGITDLAAVGE 55

Query: 69  TEIRAFISKRRTQKIGD----------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
            ++  F+   R    GD           S  R+L  ++   ++     +        +R 
Sbjct: 56  DDVSDFLVALRR---GDPDSGATALAAVSAARALIAVRGLHRFAAAEGLAELDVARAVRP 112

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
                 LP++L   Q L L++        +   +  RN A+L LLY  G RISEA+ L  
Sbjct: 113 PTPGRRLPKSLTVDQVLALLEGAGGDNPADGP-LTLRNRALLELLYSTGSRISEAVGLDV 171

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGK 236
            ++     ++ ++GKG K R+VP+      A+  Y      DL    +    +F   RG 
Sbjct: 172 DDVDTHARSVLLRGKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGG 231

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L+     + ++      G+    + H LRHSFATHLL  G D+R +Q +LGH  ++TTQ
Sbjct: 232 RLSRQSAWQVLQDAAECAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQ 291

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSIT 322
           IYT V        + E++   HP  T
Sbjct: 292 IYTLVTVHA----LREVWAGAHPRAT 313


>gi|77463394|ref|YP_352898.1| integrase/recombinase XerD [Rhodobacter sphaeroides 2.4.1]
 gi|77387812|gb|ABA78997.1| Probable integrase/recombinase XerD [Rhodobacter sphaeroides 2.4.1]
          Length = 311

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 133/281 (47%), Gaps = 34/281 (12%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97
           +Y  D + +  +L   +E+ +T       +   + A+++    Q +   +  R LS I+ 
Sbjct: 30  AYGRDLKDYATWLGRRSEDFLTA------TRDTVEAYLTFCEAQGLSSATRARRLSSIRQ 83

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA--R 155
             ++  +     ++  + +    +S  LP+ L  ++    VD +L     + +  +   R
Sbjct: 84  LYRFGHEEGWRADNPAIRISGPGRSKRLPKTLEIEE----VDRLLEAARDKGRRAEDQIR 139

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
           N  +L LLY  G+R+SE + L       +   + ++GKG K R+VPL P  R+A+ ++  
Sbjct: 140 NRCLLELLYATGMRVSEMVGLPVAAARGNPRMILVRGKGGKERMVPLSPPAREALADW-- 197

Query: 216 LCPFDLNLNIQLPLFRGIRGKP----LNPG----------VFQRYIRQLRRYLGL-PLST 260
                L             G+P    L PG           F   ++Q+    G+ P   
Sbjct: 198 -----LRARDAAEAQGQKAGRPASRFLFPGSGAAGHLTREYFYVLVKQIAVLAGVDPAKV 252

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T HTLRH+FATHLL+ G DLR IQ++LGH  LSTT+IYT+V
Sbjct: 253 TPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHV 293


>gi|227495411|ref|ZP_03925727.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436]
 gi|226830958|gb|EEH63341.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436]
          Length = 317

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 139/312 (44%), Gaps = 26/312 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L +E+G S  T+  Y  D  +FL+      E  I    + Q+    I A +++  
Sbjct: 16  GFLDYLTVEKGASAHTVAGYRRDLERFLV------ERGIADTPLAQVDTVAIDAHLTQLS 69

Query: 80  TQKIGDRSLKRSLSGIKS-----FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
               G   L  +             +Y     I +      ++  K    LP+A++ ++ 
Sbjct: 70  LGFAGKPGLSAASIARARASIRALFRYAVSEDILSADPAAEVQQKKLGKHLPKAISLEEI 129

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQG 192
             +++            +  R+ A++ LLYG G RI+E ++L+P ++    +   +++ G
Sbjct: 130 AAMLEV----AGQRPGPVGLRDVALIELLYGTGARITEVMNLSPDDLYLAGEFPHVKLFG 185

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVFQRYI 247
           KG K R+VPL     +A+ +Y  L    L    +      PLF   RG  L+       I
Sbjct: 186 KGRKERLVPLGSFAVQALEDYLLLGRPLLLGKAKTRVAGHPLFLNKRGLSLSRQSAWEII 245

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            Q     G     + H+LRHSFATHLL  G  +R +Q +LGH  ++TTQIYT V+     
Sbjct: 246 SQTAVAAGCVSEVSPHSLRHSFATHLLEGGASIRDVQELLGHASVTTTQIYTKVSMNT-- 303

Query: 308 DWMMEIYDQTHP 319
             + E++  THP
Sbjct: 304 --LREVHALTHP 313


>gi|254518936|ref|ZP_05130992.1| site-specific tyrosine recombinase XerC [Clostridium sp. 7_2_43FAA]
 gi|226912685|gb|EEH97886.1| site-specific tyrosine recombinase XerC [Clostridium sp. 7_2_43FAA]
          Length = 457

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 103/324 (31%), Positives = 158/324 (48%), Gaps = 44/324 (13%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY----TEEKITI 60
           NLPE V         ++L  LE  +G S  T++ YE D   F  FL  Y    T++ +  
Sbjct: 140 NLPESVV--------DFLNYLETIKGKSPNTIKGYEIDLTLFFRFLKIYKGLITDDSLEF 191

Query: 61  QTI----------RQLSYTEIRAFISKRRTQKI-GDRSLKRSLSGIKSFLKYLK-KRKIT 108
             I          R++  T++ AF+S    Q+  G  +  R ++ +KS+ K+L  K KI 
Sbjct: 192 SEIDIRDIDNSFVRKIKLTDLYAFLSFAEKQRENGSYARARKVAALKSYFKFLNGKAKII 251

Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
            ++  L + + K +   P  L+  +++ L+ +  L   ++  +   R+  IL L   CG+
Sbjct: 252 DDNPTLELESPKINKRHPVYLSLDESVNLLSS--LDKDNKNYY---RDYCILTLFLNCGM 306

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----C-PFDLN 222
           R+SE  S+    I  D  TL I GKGDK R V L  +  KAI  Y  +     C P D  
Sbjct: 307 RLSELCSIKLDKIKGD--TLTIIGKGDKERTVYLNEACLKAIDNYLAVRDTSKCTPED-- 362

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DL 280
              +  L    R KP+N    +  +++     GL     T H LRH+ AT +  +G  D+
Sbjct: 363 ---KEYLLLSSRYKPINKRTVELLVKKHIFNSGLSNEKYTPHKLRHTAATLMYKHGNVDI 419

Query: 281 RSIQSILGHFRLSTTQIYTNVNSK 304
           RS+QSILGH  +STTQIYT+V+ +
Sbjct: 420 RSLQSILGHENISTTQIYTHVDEE 443


>gi|326203021|ref|ZP_08192887.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
 gi|325986667|gb|EGD47497.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
          Length = 329

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 162/318 (50%), Gaps = 28/318 (8%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL-----------AFYT 54
           +  I  FE+    +++L  ++  +G S  T+Q Y  D R F  FL            F T
Sbjct: 1   MKNIYDFEMPAVLRDFLNYMQTIKGKSINTIQVYFYDLRIFFRFLKIHRNIVDKNLEFDT 60

Query: 55  EE--KITIQTIRQLSYTEI---RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKIT 108
            E   I I  ++ ++ +++    +F+S +R      R+  R ++ +KSF  YL  K K+ 
Sbjct: 61  IEITDIDIPLLKTVTLSDLYTYMSFVSNKRDNTSHARA--RKVASLKSFFNYLSTKAKLL 118

Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
             +  + + + K    LPR LN  ++  L+ +V    +HE      R+ AI+ +   CG+
Sbjct: 119 DINPTIELESPKILKRLPRYLNFDESKKLLTSVT-EANHE---YSVRDYAIITIFLNCGI 174

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
           R+SE + +   NI D+  TL + GKG K R +PL  +  +AI +Y  + P +  L  +  
Sbjct: 175 RLSELVGINLYNIKDN--TLTVFGKGGKERSIPLNKACLQAIEDYMKIRPVN-GLKDKSA 231

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGG-DLRSIQSI 286
           LF   R + ++    Q+ +++  +  GL P   + H LRH+ AT +   G  D+R++Q I
Sbjct: 232 LFISRRNQRISKESVQKIVKRYIKEAGLDPQRYSTHKLRHTAATLMYKYGNVDIRALQEI 291

Query: 287 LGHFRLSTTQIYTNVNSK 304
           LGH  +STT+IYT+++ +
Sbjct: 292 LGHESISTTEIYTHLDQQ 309


>gi|227879131|ref|ZP_03997015.1| integrase-recombinase [Lactobacillus crispatus JV-V01]
 gi|227861288|gb|EEJ68923.1| integrase-recombinase [Lactobacillus crispatus JV-V01]
          Length = 302

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 135/286 (47%), Gaps = 10/286 (3%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E   +L  L+ ER  S  T+ +Y+ D  +   F      E        ++   +I+ ++ 
Sbjct: 7   ELDQFLSYLQNERHYSAKTVLAYQTDLHEAERFW----HENGGFPGWTKVRERDIQVYLQ 62

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               +K+   S  R +S + SF ++L +RK+        +   +    LP+   + +   
Sbjct: 63  HLAERKLARSSQLRKMSSLHSFYRFLTRRKLVAIDPTKGITLRRGEKKLPQFFYQPELKQ 122

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           + D++        K +  RN A+  L Y  G+R+SE  +LT   +  D  T+ + GKG+K
Sbjct: 123 VFDSL-----KGNKPLTMRNLAMFELFYATGMRVSEVSNLTLNQLDLDLQTILVHGKGNK 177

Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R V      +K+++ Y +   P  L  + +  +F   +G  +     +  +++     G
Sbjct: 178 DRYVAFDDKTKKSLIAYLENARPLLLKNDDEQHVFLNNQGTGITSRGIETVMQKTFNQAG 237

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +      H LRHSFAT +L+NG DLRS+Q +LGH  LS TQIYT+V
Sbjct: 238 ISGKVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHV 283


>gi|240851370|ref|YP_002972773.1| integrase /recombinase xerD [Bartonella grahamii as4aup]
 gi|240268493|gb|ACS52081.1| integrase /recombinase xerD [Bartonella grahamii as4aup]
          Length = 312

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 148/298 (49%), Gaps = 32/298 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY--TEIRAFISK 77
           ++L+ +  ERG S  TL +Y+ D +        + +++++  ++   S    ++ A +S 
Sbjct: 9   HFLEMMSAERGASPHTLAAYQHDLQ--------WAQDELSSHSVSLFSAQKEDLIALLSL 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             T      S  R LS ++ F ++L    +  +    ++   ++   LP+ ++E   + L
Sbjct: 61  MHTFGFAASSQARRLSTLRQFYQFLYAEGLRADDPSHDIDAPRQGRPLPKIMSEDAVIKL 120

Query: 138 VDNVLLHTSH----ETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +D   L  +        ++ A R   +  +LY  GLRISE +SL  Q +     ++ ++G
Sbjct: 121 LDLAQLEVNQADYGSKDYLRALRLQLLSEMLYATGLRISELVSLPVQAVRGKAYSILVRG 180

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNP-------GVFQ 244
           KG K R+V L     + +L++ +L   D   ++  P LF      P N         V  
Sbjct: 181 KGKKERMVLLSKKAYQVLLQWLNLR--DQGKDVASPYLF------PANSETGYIARQVVA 232

Query: 245 RYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R ++ L R  G+   S + H LRH+FA+HLL NG DLR++Q +LGH  ++TTQIYT+V
Sbjct: 233 RELKNLARRAGIESDSFSPHVLRHAFASHLLQNGADLRAVQHLLGHSDIATTQIYTHV 290


>gi|944942|gb|AAA74432.1| RipX [Bacillus subtilis]
          Length = 163

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/175 (37%), Positives = 90/175 (51%), Gaps = 24/175 (13%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A+L LLY  G+R+SE + L   ++      +R  GKG K RIVP+  +   AI EY 
Sbjct: 1   RDKAMLELLYATGIRVSEMIELKTADVHLSMGFIRCFGKGRKERIVPIGEAAASAIEEYM 60

Query: 215 DLCPFDL-NLNIQLPLFRGIRG---------KPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
                 L   N+   LF    G         +P    +  R+ ++L          T HT
Sbjct: 61  TKARGKLLKNNVSDALFLNHHGNRSAARILEEPEKNRIGSRHKKEL----------TPHT 110

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           LRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        + ++Y Q HP
Sbjct: 111 LRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----LKDVYKQFHP 161


>gi|229497057|ref|ZP_04390761.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229315982|gb|EEN81911.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 398

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 154/309 (49%), Gaps = 19/309 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISK 77
           + +L  L  ER  S+ T+ +YE D +Q++ ++     EE +     R L    IR F+S 
Sbjct: 7   ERFLGYLRYERNQSEHTVAAYELDLQQYVRYVEEVLGEEFVPSDGDRDL----IRGFLSS 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q     S+ R LS +KS+ +YL K  +  +S    +R  +  + LP  L+E++    
Sbjct: 63  LIEQGRKRSSVHRKLSSLKSYYRYLVKIGLLEQSPARLVRGPRGESPLPAVLSEQE---- 118

Query: 138 VDNVL-LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           + N+L      +  ++  RN  IL + Y  G+R SE + L    +      LR+ GKG K
Sbjct: 119 ISNLLYAQEVDKDDFVALRNQLILEMFYETGMRRSELVGLLEGGVDLSSRVLRVFGKGRK 178

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ-LRRYLG 255
            RI+P    +   I EY  L    + L+ Q+  F  +  +PL+  V  + + + L+   G
Sbjct: 179 ERIIPFGDRLAARISEYLALKHQKVGLS-QI-FFVSLGNQPLSGEVVYQIVHERLQSIPG 236

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L      H LRH+FAT +L+NG  L +++ +LGH  ++TT +YT+ +       + ++Y+
Sbjct: 237 LA-RRGPHVLRHTFATAMLNNGAQLMAVKELLGHKSVATTVLYTHTSLAE----LQQMYN 291

Query: 316 QTHPSITQK 324
             HP  ++K
Sbjct: 292 -AHPRASKK 299


>gi|221639249|ref|YP_002525511.1| Phage integrase family protein [Rhodobacter sphaeroides KD131]
 gi|221160030|gb|ACM01010.1| Phage integrase family protein [Rhodobacter sphaeroides KD131]
          Length = 311

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 129/279 (46%), Gaps = 30/279 (10%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97
            Y  D + +  +L   +E+ +T       +   + A+++    Q +   +  R LS I+ 
Sbjct: 30  GYGRDLKDYAAWLGRRSEDFLTA------TRDTVEAYLTFCEAQGLSSATRARRLSSIRQ 83

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
             ++  +     ++  + +    +S  LP+ L  ++   L++            I  RN 
Sbjct: 84  LYRFAHEEGWRADNPAIRISGPGRSKRLPKTLEIEEVDRLLEAARDKGRRAQDQI--RNR 141

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            +L LLY  G+R+SE + L       +   + ++GKG K R+VPL P  R+A+ ++    
Sbjct: 142 CLLELLYATGMRVSEMVGLPVAAARGNPRMILVRGKGGKERMVPLSPPAREALADW---- 197

Query: 218 PFDLNLNIQLPLFRGIRGKP----LNPG----------VFQRYIRQLRRYLGL-PLSTTA 262
              L             G+P    L PG           F   ++Q+    G+ P   T 
Sbjct: 198 ---LRARDAAEAQGQKAGRPASRFLFPGSGAAGHLTREYFYVLVKQIAVLAGVDPAKVTP 254

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           HTLRH+FATHLL+ G DLR IQ++LGH  LSTT+IYT+V
Sbjct: 255 HTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHV 293


>gi|42526718|ref|NP_971816.1| phage integrase family site specific recombinase [Treponema
           denticola ATCC 35405]
 gi|81412439|sp|Q73NE4|XERC_TREDE RecName: Full=Tyrosine recombinase xerC
 gi|41817033|gb|AAS11727.1| site-specific recombinase, phage integrase family [Treponema
           denticola ATCC 35405]
          Length = 305

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 149/306 (48%), Gaps = 33/306 (10%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R  +K T+ SY+ D    +IF  +  E  + I    +L  ++IR FI++   +KI   S+
Sbjct: 16  RQFTKATIDSYKND---LIIFEEWLKELDLNI---FELKASDIRIFIAELADKKIAPASI 69

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R +S ++ F KY  +  +T  + I ++RNLK +  LP  +  KQA        L ++  
Sbjct: 70  NRMMSTLRGFYKYALRFNLTKMNPISSVRNLKLAQKLPVFMFPKQAQEFCR---LPSNAG 126

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
             W + R++A+   LY  G R+SE   L  +++    S   + GKG K R V      ++
Sbjct: 127 ILW-ETRDAALFASLYSTGCRVSELAGLDIKDLDKTLSYAIVFGKGKKERKVFFAEFAKE 185

Query: 209 AILEYY----DLCPF-------DLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGL 256
            + EY     DL          D    I+  LF   + +PL   G+  RYI  + RY+ L
Sbjct: 186 YLREYLKERSDLVEKFKGQVQKDGKGKIRDTLFINQKAQPLTSRGI--RYI--IDRYVEL 241

Query: 257 PLST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                  + H  RHSFA+ L++ G D+R +Q +LGH  +STTQ YT++ ++     +  +
Sbjct: 242 SPELKHLSPHAFRHSFASTLITRGADIRVVQELLGHESVSTTQRYTHITAEQ----LQNL 297

Query: 314 YDQTHP 319
           Y   HP
Sbjct: 298 YKTAHP 303


>gi|297181069|gb|ADI17268.1| site-specific recombinase xerd [uncultured alpha proteobacterium
           HF0070_17D04]
          Length = 361

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 141/305 (46%), Gaps = 23/305 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE---IRAFIS 76
            +LQ +  +RGL+  ++ +YE D    L  L+         Q  R     +   +R  ++
Sbjct: 67  EFLQAMAADRGLAANSIAAYERDLASCLESLS---------QAGRHFDSCDADDLRCLLA 117

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           +     +  RS+ R LS ++  + +L + ++  +     + N K+  +LP++L+E++   
Sbjct: 118 EWTLSGLAARSVARRLSALRQMMAWLVEERVRPDDPCRWIDNPKQPAALPKSLSEEEITA 177

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+                R +A+L LLY  GLR+SE +SL       +   + + GKG K
Sbjct: 178 LITAARALAPAAEA---LRMTAMLELLYATGLRVSELVSLPVDQFRRELEAVIVTGKGGK 234

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R+V +    R A   +  +   D     +  P     R   ++   F   ++++    G
Sbjct: 235 ERLVAMGTPARDATAAW--MAARDATEAFVTSPYLFPFRESHVSRQQFAAALKRVGAAAG 292

Query: 256 L-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           + P   + H +RHSFATH+L+ G DLR +Q +LGH  +STTQIYT    K   D +  + 
Sbjct: 293 IDPRRVSPHVVRHSFATHMLNRGADLRGLQMLLGHADISTTQIYT----KTRPDRLAGLV 348

Query: 315 DQTHP 319
              HP
Sbjct: 349 AAAHP 353


>gi|296139371|ref|YP_003646614.1| integrase family protein [Tsukamurella paurometabola DSM 20162]
 gi|296027505|gb|ADG78275.1| integrase family protein [Tsukamurella paurometabola DSM 20162]
          Length = 298

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 131/296 (44%), Gaps = 12/296 (4%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +ERG S+ T+++Y  D         F  E  + +    +L    +RA++ +R      
Sbjct: 12  LRLERGRSEHTVRAYLAD---LTALFEFAAERGVAVD---RLDLATLRAWLGERAASGAA 65

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +L R  S  +++  +  +R          ++  +   +LP  +               
Sbjct: 66  RTTLARQASSARNYTAWAARRGHLDGDPGARLKAPRPRRTLP-GVLSADDAAAALTNAAS 124

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            + E   I  R+ AI  LLY  G+R+SE   L   ++  D+  +R+ GKG+K R VP   
Sbjct: 125 GAAEGDPIAVRDQAITELLYATGIRVSELCGLDVGSVDRDRRVVRVIGKGNKERTVPYGA 184

Query: 205 SVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              + +  + D   P  +       LF G RG  L+P   +  + Q+   +        H
Sbjct: 185 PAAEVLGRWVDEARPQLVAEKSGAALFLGARGGRLDPRQARTVVHQVTGSVPGGREVAPH 244

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            LRH+ ATHLL  G DLR +Q +LGH  L+TTQ+YT+V+       +   ++Q HP
Sbjct: 245 GLRHTAATHLLDGGADLRVVQELLGHSSLATTQLYTHVSVAR----LRAAHEQAHP 296


>gi|332558273|ref|ZP_08412595.1| integrase/recombinase XerD [Rhodobacter sphaeroides WS8N]
 gi|332275985|gb|EGJ21300.1| integrase/recombinase XerD [Rhodobacter sphaeroides WS8N]
          Length = 311

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 130/279 (46%), Gaps = 30/279 (10%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97
           +Y  D + +  +L   +E+ +T       +   + A+++    Q +   +  R LS I+ 
Sbjct: 30  AYGRDLKDYATWLVRRSEDFLTA------TRDTVEAYLTFCEAQGLSSATRARRLSSIRQ 83

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
             ++  +     ++  + +    +S  LP+ L  ++   L++            I  RN 
Sbjct: 84  LYRFAHEEGWRADNPAIRISGPGRSKRLPKTLEIEEVDRLLEAARDKGRRAQDQI--RNR 141

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            +L LLY  G+R+SE + L       +   + ++GKG K R+VPL P  R+A+ ++    
Sbjct: 142 CLLELLYATGMRVSEMVGLPVAAARGNPRMILVRGKGGKERMVPLSPPAREALADW---- 197

Query: 218 PFDLNLNIQLPLFRGIRGKP----LNPG----------VFQRYIRQLRRYLGL-PLSTTA 262
              L             G+P    L PG           F   ++Q+    G+ P   T 
Sbjct: 198 ---LRARDAAEAQGQKAGRPASRFLFPGSGAAGHLTREYFYVLVKQIAVLAGVDPAKVTP 254

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           HTLRH+FATHLL+ G DLR IQ++LGH  LSTT+IYT+V
Sbjct: 255 HTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHV 293


>gi|261400435|ref|ZP_05986560.1| tyrosine recombinase XerD [Neisseria lactamica ATCC 23970]
 gi|313668771|ref|YP_004049055.1| integrase/recombinase [Neisseria lactamica ST-640]
 gi|269209883|gb|EEZ76338.1| tyrosine recombinase XerD [Neisseria lactamica ATCC 23970]
 gi|313006233|emb|CBN87695.1| putative integrase/recombinase [Neisseria lactamica 020-06]
          Length = 291

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 138/281 (49%), Gaps = 16/281 (5%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L ++R LS+ TL SY  D  +    L+      +  +T+     T++ A +     Q
Sbjct: 10  LETLWLDRRLSRNTLDSYRRDLEKIARRLS------LCGKTLADAEETDLAAAVYADGEQ 63

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
           +    S  R+LS  K    +++   +  ++    ++  K   ++P  + E+Q   L+D  
Sbjct: 64  R---SSQARALSACKRLYAWMEWEGMRADNPTRLLKPPKTDRNIPPLITEQQVSRLLDAP 120

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
              T H       R+ A+L L+Y  GLR+SEA+ L   N+  D+  +   GKGDK R+VP
Sbjct: 121 DTETPH-----GLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVP 175

Query: 202 LLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +       +  YY +  P  L       LF   +   ++  +    +++     G+    
Sbjct: 176 MGQESAYWVGRYYTEARPVLLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIG-HI 234

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + H+LRH+FATHL+ +G DLR +Q +LGH  L+TTQIYT++
Sbjct: 235 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHI 275


>gi|229815416|ref|ZP_04445748.1| hypothetical protein COLINT_02464 [Collinsella intestinalis DSM
           13280]
 gi|229808949|gb|EEP44719.1| hypothetical protein COLINT_02464 [Collinsella intestinalis DSM
           13280]
          Length = 308

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 141/319 (44%), Gaps = 21/319 (6%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P  +  ELL +  +++  +    GLS  T+++Y     Q L   A + E           
Sbjct: 3   PSSLQSELLAQIDDFIVFISCVEGLSPETVRAYG----QHLEAYADWCESHAVDGL--DP 56

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           S  ++R+++++ R       ++   LS ++SF ++L+       +  L     K+   LP
Sbjct: 57  SSRDLRSYLAEFRRDGRASTTVAAHLSALRSFFRWLEYSGHRAGAVPLATVAPKQRRELP 116

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             L  ++   L D   L        +  R++A+L L    G RISE   L   ++   + 
Sbjct: 117 HVLTAEELAALFDAPDLSCP-----VGLRDAAMLELFIATGARISELSRLELGDVCVAER 171

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNP 240
            + + GKG K RIVPL     +    Y +      L    L  +    +F   RG+ +N 
Sbjct: 172 QVCLLGKGSKERIVPLYARAIEVYERYLENGRPNLLRAPALGGDACRAVFVSDRGRAMNS 231

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              +     L+R  G+    T H +RH+FAT LL  G DLRS+Q +LGH  LSTTQIYT+
Sbjct: 232 DALRYRFDVLKRKAGISSDITPHAMRHTFATELLGGGADLRSVQELLGHASLSTTQIYTH 291

Query: 301 VNSKNGGDWMMEIYDQTHP 319
           +      D +     + HP
Sbjct: 292 LTP----DRLKSAVARAHP 306


>gi|319407841|emb|CBI81494.1| integrase/recombinase XerD [Bartonella sp. 1-1C]
          Length = 312

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 152/313 (48%), Gaps = 22/313 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY--TEIRAFISK 77
           ++L+ +  ERG S  TL +Y+ D +        + + K++  +I   S    ++   +S 
Sbjct: 9   HFLEMMSAERGASVCTLLAYQHDLQ--------WAQNKLSSHSISFFSAQREDLINLLSL 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            +       S  R LS ++ F ++L    +  +    ++ + ++   LP+ ++E     L
Sbjct: 61  MQKAGCAATSQARRLSTLRQFFQFLYAEGLREDDPSSDIDSPRQGRPLPKIISEDAVTKL 120

Query: 138 VDNVLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +D   L T       +  +   R   +L +LY  GLRISE +SL  Q +   +  + ++G
Sbjct: 121 LDFAQLETEQAESGTQNYYRALRFQVLLEMLYATGLRISELVSLPVQAVRGKEQFILVRG 180

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG+K R+V L    R+ +L++  +     +  +I L   R   G      V  R ++ L 
Sbjct: 181 KGEKERVVLLSEKARQILLQWLSVRDQRKDATSIYLFPARSSTGYIARQFV-ARGLKDLA 239

Query: 252 RYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           +  G+     + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V        +
Sbjct: 240 KRAGIQSENFSPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQIYTHVLEAR----L 295

Query: 311 MEIYDQTHPSITQ 323
             + ++ HP + Q
Sbjct: 296 HRLVNEYHPLVDQ 308


>gi|58616838|ref|YP_196037.1| tyrosine recombinase xerD [Ehrlichia ruminantium str. Gardel]
 gi|58416450|emb|CAI27563.1| Tyrosine recombinase xerD [Ehrlichia ruminantium str. Gardel]
          Length = 312

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 92/297 (30%), Positives = 148/297 (49%), Gaps = 31/297 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  +  E+ +S  T QSY  D    L    F+  + + +    ++S  +++ ++     
Sbjct: 11  FLTAIAAEKHISYNTYQSYMSD---LLDLCKFFDCKNLPLI---EVSRDDLKDYVRLMHK 64

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           ++    ++ R +S IK+  K+  K  I      L++   + S +LP+ALN ++   L+D 
Sbjct: 65  REYKSSTISRKISAIKNLYKFFCKDNIIAYDPALSLDFPRLSRALPKALNIEEVSRLLDT 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-------DQSTLRIQGK 193
             L +S +      R +AI+ +LY  G+R+SE + L   +I +       + S + I+GK
Sbjct: 125 AALDSSPD----GLRTNAIINILYSSGIRVSELIYLKLNSIKEALNNDNIEISYITIRGK 180

Query: 194 GDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
            ++ RIV L    + S++K +  Y    P      I   LF G +    NP   QR I Q
Sbjct: 181 ANRERIVLLNSSAIVSIQKYLEVYMHFVPN--GYEISQWLFPGTKFD--NPITRQR-IGQ 235

Query: 250 LRRYLGLPLST-----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           L + L +         + H LRHSFATHLL+NG D+  IQ +LGH  LSTTQIYT V
Sbjct: 236 LLKDLSISAGVDMTRISPHKLRHSFATHLLNNGSDIIFIQKMLGHTSLSTTQIYTYV 292


>gi|224537800|ref|ZP_03678339.1| hypothetical protein BACCELL_02683 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520620|gb|EEF89725.1| hypothetical protein BACCELL_02683 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 294

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 149/308 (48%), Gaps = 26/308 (8%)

Query: 21  WLQN-----LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           WL N     L+ ER  S+ T++SY  D  QF  F      E+I    +  +    +R +I
Sbjct: 2   WLTNSFLDYLQYERNYSEETIKSYREDLCQFEKF----AREEIGDSALSGVKAELVREWI 57

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                +     S+ R LS ++SF K+L ++     + +  +   K    LP  L E +  
Sbjct: 58  VSLMDKGYTSTSINRKLSSLRSFYKFLLRKGEVCVNPLQKITGPKNKKPLPTFLRESEMD 117

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+D V         +   R+  I+ + Y  G+R+SE + L  +N+      +++ GK +
Sbjct: 118 KLLDEVDFGEG----FKGCRDHMIIEMFYATGMRLSELIGLDDKNVDFSSLLIKVTGKRN 173

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYI-RQLR 251
           K R++P    ++ A++EY ++     N  +Q      F    G+ L+  + +  + R L 
Sbjct: 174 KQRLIPFGEELKNAMIEYVNV----RNEIVQARTDAFFVRESGERLSRSIVENLVKRNLS 229

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           + + L    + H LRH+FAT +L++  +L +I+ +LGH  L+TT++YT+   +     + 
Sbjct: 230 KVVTLK-KRSPHVLRHTFATTMLNHDAELGAIKELLGHESLATTEVYTHTTFEE----LK 284

Query: 312 EIYDQTHP 319
           ++Y+Q HP
Sbjct: 285 KVYNQAHP 292


>gi|206602847|gb|EDZ39328.1| Putative phage integrase family protein [Leptospirillum sp. Group
           II '5-way CG']
          Length = 314

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 98/315 (31%), Positives = 155/315 (49%), Gaps = 37/315 (11%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           ++L +  G S  T Q+Y  D    L  LA F  E  +++      S  ++  + ++R  +
Sbjct: 14  EDLRVASGRSPHTTQAYLLD----LFALARFLGEHGLSLL---DFSPEDVTRYFTRR--E 64

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            +  RS  R LS I+S+ ++LK+R + + + + L +  L ++  LP  L+E++ L L++ 
Sbjct: 65  DLAMRSRSRVLSAIRSWSRFLKRRGLPSIDPDTLPVPRLPRN--LPGVLDEEEILRLLEA 122

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
               T         R+ AIL   Y  GLR+SE   LT   +   +  +R+ GKG K R+ 
Sbjct: 123 PDPKTDE-----GIRDRAILATFYASGLRVSELAELTLDRLNLKEEQIRVTGKGQKERVA 177

Query: 201 PLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-----YIRQLRRY 253
             L  V  A L  Y   + P     +  L L R   G       F R      I+   + 
Sbjct: 178 -FLDGVSCARLRLYLERVRPSTSTSDKTLFLTRRQTG-------FTRQGLWLLIKGYAKQ 229

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+  + + HTLRHSFATHLLS+G D+RSIQ +LGH  + TT+IYT+V+ +     + E 
Sbjct: 230 CGIDRNVSPHTLRHSFATHLLSHGMDIRSIQILLGHSDIQTTEIYTHVDIR----MLAED 285

Query: 314 YDQTHPSITQKDKKN 328
             + HP   Q D++ 
Sbjct: 286 LARYHPRGKQPDREQ 300


>gi|88607245|ref|YP_504674.1| tyrosine recombinase XerD [Anaplasma phagocytophilum HZ]
 gi|88598308|gb|ABD43778.1| tyrosine recombinase XerD [Anaplasma phagocytophilum HZ]
          Length = 311

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 150/315 (47%), Gaps = 31/315 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L+ L   +G+S+ T+ SY+CD      FL      +     I   SY ++  +I   
Sbjct: 8   RSFLEFLVSSKGVSENTVCSYKCDLEDLSQFL------RRNGLKIVDASYGDLCEYIRNL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     ++ R +S IK    +L K +I      L++ + +   +LPR ++E     L+
Sbjct: 62  NGRAYSAATVARRVSAIKGLCSFLYKDRIVHSDLSLSLESCRLGRTLPRVISESDIGMLL 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-------MDDQSTLRIQ 191
           D      S E K    R  AI+ +LY  G+RISE + L    I       + D   + I+
Sbjct: 122 DIAKADLSAEGK----RLYAIVNILYSSGVRISELIHLGFFEIDAMLHEHVGDIGYIIIK 177

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDL--CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           GKG++ R+V L      +I  Y ++  C           LF G +    +  + ++ + Q
Sbjct: 178 GKGNRERLVLLNEVAMDSIRAYLEVRKCFIAGENTESRWLFPGAK---YDQCISRQRVGQ 234

Query: 250 LRRYLGL-----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           L + L +     P   + H  RHSFATHLL+NG ++  IQ +LGH  LSTTQ+YT+V S+
Sbjct: 235 LLKELAISAGIDPEKVSPHKFRHSFATHLLNNGSNIVFIQKMLGHVNLSTTQVYTHVASE 294

Query: 305 NGGDWMMEIYDQTHP 319
                + ++  + HP
Sbjct: 295 Q----LRDVLSRFHP 305


>gi|57238849|ref|YP_179985.1| tyrosine recombinase xerD [Ehrlichia ruminantium str. Welgevonden]
 gi|58578779|ref|YP_196991.1| tyrosine recombinase xerD [Ehrlichia ruminantium str. Welgevonden]
 gi|57160928|emb|CAH57833.1| putative integrase/recombinase XerD or XerC [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58417405|emb|CAI26609.1| Tyrosine recombinase xerD [Ehrlichia ruminantium str. Welgevonden]
          Length = 312

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 92/297 (30%), Positives = 148/297 (49%), Gaps = 31/297 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  +  E+ +S  T QSY  D    L    F+  + + +    ++S  +++ ++     
Sbjct: 11  FLTAIAAEKHISYNTYQSYMSD---LLDLCKFFDCKNLALI---EVSRDDLKDYVRLMHK 64

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           ++    ++ R +S IK+  K+  K  I      L++   + S +LP+ALN ++   L+D 
Sbjct: 65  REYKSSTISRKISAIKNLYKFFCKDNIIAYDPALSIDFPRLSRTLPKALNIEEVSRLLDT 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-------DQSTLRIQGK 193
             L +S +      R +AI+ +LY  G+R+SE + L   +I +       + S + I+GK
Sbjct: 125 AALDSSPD----GLRTNAIINILYSSGIRVSELIYLKLNSIKEALNNDNIEISYITIRGK 180

Query: 194 GDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
            ++ RIV L    + S++K +  Y    P      I   LF G +    NP   QR I Q
Sbjct: 181 ANRERIVLLNSSAIVSIQKYLEVYMHFVPN--GYEISQWLFPGTKFD--NPITRQR-IGQ 235

Query: 250 LRRYLGLPLST-----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           L + L +         + H LRHSFATHLL+NG D+  IQ +LGH  LSTTQIYT V
Sbjct: 236 LLKDLSISAGVDMTRISPHKLRHSFATHLLNNGSDIIFIQKMLGHTSLSTTQIYTYV 292


>gi|238798591|ref|ZP_04642067.1| Tyrosine recombinase [Yersinia mollaretii ATCC 43969]
 gi|238717547|gb|EEQ09387.1| Tyrosine recombinase [Yersinia mollaretii ATCC 43969]
          Length = 263

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 134/266 (50%), Gaps = 16/266 (6%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           E++ +   + L   ++R+ +S+ +   +   SL   LS ++SFL +L  + +   +    
Sbjct: 5   EQMGLAHWQTLDAAQVRSLVSRSKRAGLHASSLALRLSALRSFLNWLVSQGVLQANPAKG 64

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +   +    LP+ ++  +   L+D  L         +  R+ A+L ++YG GLR+SE + 
Sbjct: 65  VSTPRSGRHLPKNIDVDEVDKLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVG 118

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGI 233
           +  +++      + + GKG K R VP+    R A+  L ++ L   +L       +F   
Sbjct: 119 MNCKHVDLVGGEVWVMGKGSKERKVPI---GRTAVTWLNHW-LALRELFEPQDDAIFLAN 174

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            GK ++    Q+   +     G+      H LRHSFATH+L + GDLR++Q +LGH  L+
Sbjct: 175 TGKRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLT 234

Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHP 319
           TTQIYT+++ ++    +  +YD  HP
Sbjct: 235 TTQIYTHLDFQH----LATVYDAAHP 256


>gi|217969617|ref|YP_002354851.1| tyrosine recombinase XerD [Thauera sp. MZ1T]
 gi|217506944|gb|ACK53955.1| tyrosine recombinase XerD [Thauera sp. MZ1T]
          Length = 309

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 140/298 (46%), Gaps = 20/298 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E GL++ TL  Y  D  +F  +L    +           +Y    +  +K  +Q+  
Sbjct: 27  LWLEHGLARNTLAGYRSDLARFAAWLETRAQRLPAAAGADLAAYLAEFSRAAKPASQR-- 84

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
                R ++  + + + L   +   E   L +   + +   P+ L+E Q   L+    L 
Sbjct: 85  -----RLIAAWRRYYRLLLANREIAEDPTLAIDTPRAAERFPKTLSEPQVEALLAAPALD 139

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           T         R+  +L +LY  GLR+SE + L    +  ++  +R+ GKG K R+VPL  
Sbjct: 140 TPQGL-----RDRCMLEVLYAAGLRVSELVGLKIFAVGVNEGVVRVMGKGSKERLVPL-G 193

Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTT 261
            +    L+ Y  +  P  L       +F    G  ++  +F R I+      G+ P   +
Sbjct: 194 EIAADWLQRYLAEARPVLLAGRSCDEIFVTRLGAAMSRQMFWRLIKHYALAAGIAPERIS 253

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     + +++ + HP
Sbjct: 254 PHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER----LKQLHARHHP 307


>gi|288803800|ref|ZP_06409227.1| tyrosine recombinase XerD [Prevotella melaninogenica D18]
 gi|288333707|gb|EFC72155.1| tyrosine recombinase XerD [Prevotella melaninogenica D18]
          Length = 294

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 149/306 (48%), Gaps = 23/306 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  ++ ER  S +T+ +Y  D  +F         E+   +   QLS+  I + I + 
Sbjct: 5   EKFLDYIKFERNYSPMTVINYRKDLTEF---------ERFYKELEPQLSWESIDSDIVRN 55

Query: 79  RTQKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             + + DR     S+ R LS ++SF ++  +RK+  +  +  ++  KK   LP+ L E +
Sbjct: 56  WMEYMMDRGNSASSVNRRLSALRSFYQFALRRKLIEKDPVHGLQGPKKQKPLPQFLKESE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D+ +   S++    D     I+   Y  G+R+SE + L  ++I +    +++ GK
Sbjct: 116 MERLLDSKMWTDSYK----DVLERTIIITFYVTGIRLSELIGLDDKDIDNVTCEVKVTGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            +K RIVP    +     +Y ++    +  +  +  F+  +GK +     +  +++    
Sbjct: 172 RNKQRIVPFGKELADVFAQYQEVRNTTVKGD-SIAFFQTEKGKRMTTAQVRTLVKKNLSK 230

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +      + H LRH+FAT +L++   L S++ +LGH  LSTT+IYT+   +     + ++
Sbjct: 231 VSTLKKRSPHVLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQ----LKKV 286

Query: 314 YDQTHP 319
           Y   HP
Sbjct: 287 YKNAHP 292


>gi|114320950|ref|YP_742633.1| integron integrase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227344|gb|ABI57143.1| integron integrase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 462

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 143/316 (45%), Gaps = 60/316 (18%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           RGL+  T ++Y   T +F++FL          + +      +++ F+S+  TQ+ +   +
Sbjct: 159 RGLAISTEKTYLAWTCRFIVFL--------QSKPVESADEADVQQFLSQLVTQRNVAAST 210

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++L+ +  F +Y+ +R +     +  +   K+   LP  L+  +   L+    +H  H
Sbjct: 211 QSQALNALVFFFRYVLQRPL---GELQAIERSKRPRRLPVVLSRNEVKALLSE--MHGVH 265

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPL---- 202
                      +  LLYG G+R+ EAL L  ++I  ++  + ++ GKGDK R+VPL    
Sbjct: 266 HL---------LASLLYGSGMRVMEALRLRVKDIDFERRAITVRSGKGDKDRVVPLPEST 316

Query: 203 ---------------------------LPSV-----RKAILEYYDLCPFDLNLNIQLPLF 230
                                      LP       R A  E++    F        P  
Sbjct: 317 IAPLQNHLRQVKAIHEGDLADGYGEASLPHALARKYRNAGKEWHWQYVFPSARVAVDPRS 376

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             IR   L+    QR +++  R   +P   + HTLRHSFATHLL  G D+R++Q +LGH 
Sbjct: 377 GAIRRHHLHETAVQRAVKRAVRASRIPKQASCHTLRHSFATHLLERGQDIRTVQELLGHA 436

Query: 291 RLSTTQIYTNVNSKNG 306
            +STT IYT+V SK G
Sbjct: 437 DVSTTMIYTHVMSKGG 452


>gi|300703191|ref|YP_003744793.1| site-specific tyrosine recombinase [Ralstonia solanacearum
           CFBP2957]
 gi|299070854|emb|CBJ42155.1| site-specific tyrosine recombinase [Ralstonia solanacearum
           CFBP2957]
          Length = 308

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 142/305 (46%), Gaps = 22/305 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +   L +E GL++ TL +Y  D   +  +LA         + I Q    ++  + + R
Sbjct: 20  QRFCDALWLEDGLARNTLDAYRRDLTLYAQWLAGRG------KAIDQTEDDDLADYFAAR 73

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   + +R  +  K F ++  +  +        +   K+   +P+ L+E Q   L+
Sbjct: 74  HEASRASTANRRR-TVFKRFFQWALREHVVGADPSRLLSTAKQPPRIPKTLSEAQVEALI 132

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKI 197
               + T      +  R+ A++ L+Y  GLR+SE ++L    +  ++  +R I GKG K 
Sbjct: 133 AAPDVDTP-----LGLRDRAMIELMYASGLRVSEIVALKSVEVGLNEGVVRVIGGKGGKD 187

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ--LRRYL 254
           R+VP        +  Y  D     L       LF   RG  +    F   I++  LR  +
Sbjct: 188 RLVPFGAEAGDWLRRYLRDGRTALLGKRTADALFVTARGDGMTRQAFWHLIKRYALRADI 247

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
             PLS   HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++
Sbjct: 248 HAPLSP--HTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARER----LRTLH 301

Query: 315 DQTHP 319
            Q HP
Sbjct: 302 AQHHP 306


>gi|145641992|ref|ZP_01797565.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           R3021]
 gi|145273358|gb|EDK13231.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           22.4-21]
          Length = 185

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/177 (37%), Positives = 92/177 (51%), Gaps = 14/177 (7%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           ID R+ AIL L+Y  GLR+SE   L   +I      +R+ GKG+K R+VP       AI 
Sbjct: 18  IDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYASHAIQ 77

Query: 212 EYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           E+  +     P D        LF    G  ++    Q+ +       GL      H LRH
Sbjct: 78  EWLKVRALFNPKDE------ALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRH 131

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           SFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    + E+YDQ HP   +K
Sbjct: 132 SFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEVYDQAHPRAKRK 184


>gi|16082303|ref|NP_394769.1| site-specific integrase/recombinase XerD related protein
           [Thermoplasma acidophilum DSM 1728]
 gi|10640657|emb|CAC12435.1| site-specific integrase/recombinase XerD related protein
           [Thermoplasma acidophilum]
          Length = 283

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 137/290 (47%), Gaps = 32/290 (11%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T++ Y     QFL F+    +E   +   R  ++  ++   SK         S   +
Sbjct: 22  SRYTIKEYRFLVDQFLSFMNKKPDEITPMDIERYKNFLAVKKRYSKT--------SQYLA 73

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           +  +K F K L  R        +N+   K+ + +P  L+E +A  L+         E   
Sbjct: 74  IKAVKLFYKALDLRVP------INLTPPKRPSHMPVYLSEDEAKRLI---------EAAS 118

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAI 210
            D R  AI+ +L   G+R+ E  +L   ++   +S + ++ GKGDK RIV +     KA+
Sbjct: 119 SDTRMYAIVSVLAYTGVRVGELCNLKISDVDLQESIINVRSGKGDKDRIVIMAEECVKAL 178

Query: 211 LEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
             Y DL    D + +    LF   R    +    +R IR L +  G+    T H LRH+F
Sbjct: 179 GSYLDLRLSMDTDNDY---LFVSNRRVRFDTSTIERMIRDLGKKAGIQKKVTPHVLRHTF 235

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           AT +L NGGD+R IQ ILGH  ++TTQIYT++N       + E+Y Q  P
Sbjct: 236 ATSVLRNGGDIRFIQQILGHASVATTQIYTHLNDS----ALREMYTQHRP 281


>gi|240145649|ref|ZP_04744250.1| integrase/recombinase XerD [Roseburia intestinalis L1-82]
 gi|257202271|gb|EEV00556.1| integrase/recombinase XerD [Roseburia intestinalis L1-82]
          Length = 218

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 113/226 (50%), Gaps = 11/226 (4%)

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +K+F  +L+K +         ++  K   ++PR L  ++   L++    +T  E      
Sbjct: 1   MKAFFHFLEKERRIESDPAWRLKAPKIEKTMPRILTTEEVTFLLEQPSGNTPKEL----- 55

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A+L LLY  G+R+SE +SL   + ++ Q    I     K RI+P     R+A+  Y 
Sbjct: 56  RDKAMLELLYATGIRVSELISLKVSD-LNLQMEYVICTDIHKERIIPFGNVAREALTRYM 114

Query: 215 DLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                 L      P LF    G  ++   F + I+   +  G+    T HTLRHSFA HL
Sbjct: 115 QDGRDHLISQADCPWLFTNCTGGAMSRQGFWKLIKFYGKKAGIESEITPHTLRHSFAAHL 174

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           +SNG DL+S+Q +LGH  +STTQIY    S+ G   + E+Y + HP
Sbjct: 175 ISNGADLKSVQEMLGHSDISTTQIY----SQMGQGRIREVYLKAHP 216


>gi|302383500|ref|YP_003819323.1| integrase [Brevundimonas subvibrioides ATCC 15264]
 gi|302194128|gb|ADL01700.1| integrase family protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 300

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 113/228 (49%), Gaps = 16/228 (7%)

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
           F ++       T+     +   K+   LPR LN ++ + L    L  ++        R  
Sbjct: 78  FYRFAMGEGWRTDDPSRRLDAPKQGRPLPRTLNREEVVGL----LTASAARDGAAGLRMI 133

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           A++ L Y  GLR+SE L L  + +  D + L ++GKG K R+ PL  S R+A+  +  L 
Sbjct: 134 ALVELAYASGLRVSELLGLRVEAVRRDPAYLIVRGKGGKERLAPLNASAREAVKAW--LI 191

Query: 218 PFDLNLNIQLP----LF-RGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFAT 271
             D     + P    LF  G     L P  F + + Q     G+ P   + H LRH+FAT
Sbjct: 192 ARDARRPEKAPDSPWLFPSGAASGHLTPRRFAQMLDQAAVDAGIDPARVSPHVLRHAFAT 251

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HLL  G DLR +Q++LGH  ++TTQIYT+V +    D + ++ ++ HP
Sbjct: 252 HLLEGGADLRVVQTLLGHADIATTQIYTHVAT----DRLTQVVNRHHP 295


>gi|262202039|ref|YP_003273247.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262085386|gb|ACY21354.1| integrase family protein [Gordonia bronchialis DSM 43247]
          Length = 304

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 142/304 (46%), Gaps = 19/304 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +  +L +E G S  T+++Y  D R  +   AF     +    I     T +RA++++  
Sbjct: 14  EFADHLRLEMGRSPHTVRAYVGDVRGLI---AFAGARGVATADI---DLTLLRAWLAEHT 67

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +     ++ R +S +K+F  +  +  + ++     +R  K   +LP  L   Q    V 
Sbjct: 68  RRGAARTTIARQVSSVKTFCAWAVREGLMSDDPSHRLRAPKAHRTLPAVLAPAQ----VP 123

Query: 140 NVLLHTSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           +V+   + E    D    R++ I+ +LY  G+R+ E   L   ++  D+  LR+ GKGDK
Sbjct: 124 DVIAAAAAERPQGDPIALRDTVIVEVLYAGGIRVGELCGLDVDDVDRDRRVLRVIGKGDK 183

Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R VP       A+  +     P          L  G RG  L+  + +  + +     G
Sbjct: 184 ERTVPYGAPAAVALDAWLRHGRPALATERSGAALLLGARGGRLDQRMARTVVTRAVEQAG 243

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            P +   H LRHS ATHLL  G DLR +Q +LGH  L+TTQIYT+V+ +     +  +++
Sbjct: 244 GP-AMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQIYTHVSVER----LRAVHN 298

Query: 316 QTHP 319
           Q HP
Sbjct: 299 QAHP 302


>gi|28572274|ref|NP_789054.1| DNA recombinase [Tropheryma whipplei TW08/27]
 gi|28410405|emb|CAD66791.1| putative DNA recombinase [Tropheryma whipplei TW08/27]
          Length = 349

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 157/333 (47%), Gaps = 55/333 (16%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS--KRRTQKI 83
           ++E GLS  TLQ+Y        I+L++  E+    Q + +++   I  F+   +R T+K 
Sbjct: 30  KLELGLSDATLQTYR---NSLGIYLSWLGEQGT--QRLSEVNSNAIERFLEYRQRHTRK- 83

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL- 142
              +L  +++ +++F ++L    +      LN     +   +P+AL    +L  + N+L 
Sbjct: 84  --STLANTVAALRTFHRHL----VLEGRQALNPTEKLQQPKVPKALPHPLSLDEIINLLK 137

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGDKIRIVP 201
              +++ + I  R+ A++ +LYG G RISEA+SL      + DQ+ LR+ GKG+K R+V 
Sbjct: 138 AADANQAREISLRDRALIEVLYGTGARISEAVSLNVNAFAESDQNLLRLTGKGNKQRMVL 197

Query: 202 LLPSVRKAILEYYD------LCPFDLNLNIQ----------------------------L 227
                R A+  Y        L    +  NI                             +
Sbjct: 198 FGSYARNAVDNYLQHSRPKLLARSHVYRNITDASTLKYRPTSSTIGDAEDGVLTATAAGV 257

Query: 228 P-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           P LF   RGK L        IR+L     +    + H+LRHSFATH+L  G D+R++Q +
Sbjct: 258 PWLFLSNRGKRLTRQQAGNIIRKLGEAAEIGRYISPHSLRHSFATHMLQAGADIRTVQEL 317

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           LGH  ++TT +YT V      D + E+Y  +HP
Sbjct: 318 LGHSSINTTSVYTKVTI----DSLREVYTTSHP 346


>gi|329962250|ref|ZP_08300256.1| putative tyrosine recombinase XerC [Bacteroides fluxus YIT 12057]
 gi|328530358|gb|EGF57235.1| putative tyrosine recombinase XerC [Bacteroides fluxus YIT 12057]
          Length = 294

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 149/307 (48%), Gaps = 25/307 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L  L  ER  S+ T++ Y  D    ++ L  + +E +   T   +    +R +I+  
Sbjct: 5   DSFLDYLLYERNYSEGTVKYYRSD----ILELQDFGKEMLGDLTPSDIDAELVREWIASL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     ++ R LS I+++ K+L +R       +  +   KK   LP  L E +   L+
Sbjct: 61  MDRGCASSTINRKLSSIRAYYKFLLRRGEVAVDPLRKITGPKKKKPLPVFLREGEMDKLL 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D+       E      RN  I+ + Y  G+R+SE + L  +++    S +++ GK +K R
Sbjct: 121 DDTDFGEGFEG----CRNHLIIEMFYATGMRLSELIGLDDKDVDYSASLIKVTGKRNKQR 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-----FRGIRGKPLNPGVFQRYI-RQLRR 252
           ++P    ++ ++ EY ++       N  +P+     F    GK L   +    + R L +
Sbjct: 177 LIPFDEELKFSMQEYVNV------RNETIPVRSDAFFVRENGKRLYRSIVAYLVKRNLSK 230

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            + +    + H LRH+FAT +L+NG DL SI+ +LGH  L+TT++YT+   +     + +
Sbjct: 231 VVTVK-KRSPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEE----LKK 285

Query: 313 IYDQTHP 319
           +Y+Q HP
Sbjct: 286 VYNQAHP 292


>gi|313682300|ref|YP_004060038.1| tyrosine recombinase xerd subunit [Sulfuricurvum kujiense DSM
           16994]
 gi|313155160|gb|ADR33838.1| tyrosine recombinase XerD subunit [Sulfuricurvum kujiense DSM
           16994]
          Length = 273

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 122/237 (51%), Gaps = 28/237 (11%)

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE---KQALTLVDNVL 142
           R+L R LS   SFL +  + +  + S   ++  + K+  LP+ +     +  L ++D   
Sbjct: 60  RTLNRKLSAFNSFLDFCHRNRFDSLSTKFSLSKVPKN--LPKYVTYETIQAGLGMIDR-- 115

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
                 + WI  R+ A++  LY  G RISEAL     +I  +   +R  GKG+K R VP+
Sbjct: 116 ------SDWIGLRDYALILFLYATGSRISEALIAEEGDIEIEWLRIR-HGKGEKERYVPI 168

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTT 261
                KA+  Y +  P++     +  L+   RG+PL+    F+  I Q  +YLG+    +
Sbjct: 169 AHEALKALRAYQEASPYN-----KPYLWLNYRGEPLSRISAFK--ITQ--KYLGV----S 215

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
            H LRHS+AT L+  G DLR +Q +LGH  L TTQIYT+V  +N  + ++  +   H
Sbjct: 216 PHALRHSYATALILGGADLRVVQELLGHASLLTTQIYTHVQKQNLQETVLRHHPMAH 272


>gi|18978240|ref|NP_579597.1| integrase-recombinase protein [Pyrococcus furiosus DSM 3638]
 gi|73920477|sp|Q8TZV9|XERC_PYRFU RecName: Full=Probable tyrosine recombinase xerC-like
 gi|18894057|gb|AAL81992.1| integrase-recombinase protein [Pyrococcus furiosus DSM 3638]
          Length = 286

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 90/297 (30%), Positives = 146/297 (49%), Gaps = 39/297 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDT-RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           R+  L++  +E   + L L+    +T R +  FL+ + EE  +      L       F++
Sbjct: 2   REKTLRSEVLEEFATYLELEGKSKNTIRMYTYFLSKFLEEGYSPTARDALR------FLA 55

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           K R +    RS+   +  +K++ K+     +  E+    +RN K   +LP++L E++   
Sbjct: 56  KLRAKGYSIRSINLVVQALKAYFKF---EGLNEEAE--RLRNPKIPKTLPKSLTEEEVKK 110

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGD 195
           L++ +             R+  I+ LLYG GLR+SE  +L  ++I  ++  L ++G KG 
Sbjct: 111 LIEVIPKD--------KIRDRLIVLLLYGTGLRVSELCNLKIEDINFEKGFLTVRGGKGG 162

Query: 196 KIRIVP----LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK---PLNPGVFQRYIR 248
           K R +P    LL  ++  +    D  P+         LF   R K    L+P    R ++
Sbjct: 163 KDRTIPIPQPLLTEIKNYLRRRTDDSPY---------LFVESRRKNKEKLSPKTVWRILK 213

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +  R  G+    T H LRHSFATH+L  G D+R IQ +LGH  LSTTQIYT V +K+
Sbjct: 214 EYGRKAGI--KVTPHQLRHSFATHMLERGIDIRIIQELLGHASLSTTQIYTRVTAKH 268


>gi|260909719|ref|ZP_05916413.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260636144|gb|EEX54140.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 293

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 145/306 (47%), Gaps = 23/306 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L+ E   S+LT+ SY  D R F  F     + K T     QLS+  I A I + 
Sbjct: 4   EQFLNYLQYELNRSELTIASYGDDLRAFEAFF----KNKDT-----QLSWEAIDADIIRD 54

Query: 79  RTQKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             + + D+     +++R LS ++SF ++   R   T++    +   K+S  LP+ L E +
Sbjct: 55  WMESMMDKGCSATTIQRRLSALRSFYRFGLTRGYVTKNPARGIVGPKRSRPLPQFLREAE 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D+V    S+     +     I+   Y  G+R++E + L   +I  +   +++ GK
Sbjct: 115 IDRLLDDVPAGDSYR----ELLAYTIVLTFYSTGMRLAELVGLDDDSIDFETRVIKVLGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R++P    + + +  Y      ++    +   F    G+ +  G  Q  +R     
Sbjct: 171 GSKQRLIPFADELEEGLKTYITRRDAEVTRKSK-AFFVDRHGERVKRGAVQNSVRASLAK 229

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +      + H LRHSFAT +L+N   L S++ +LGH  LSTT+IYT+   +     +  I
Sbjct: 230 VTSMKKRSPHVLRHSFATAMLNNEAGLESVKKLLGHESLSTTEIYTHTTFEQ----LRRI 285

Query: 314 YDQTHP 319
           YD+ HP
Sbjct: 286 YDKAHP 291


>gi|163736279|ref|ZP_02143698.1| phage integrase [Phaeobacter gallaeciensis BS107]
 gi|161390149|gb|EDQ14499.1| phage integrase [Phaeobacter gallaeciensis BS107]
          Length = 337

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 140/308 (45%), Gaps = 22/308 (7%)

Query: 7   PEIVSFELLKERQNWLQNL----EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
           P   S    K+   W+         + G ++ TL +Y  D +    +L          + 
Sbjct: 4   PAAQSANAPKDDLQWIATFLDAQAADLGAARNTLLAYGRDLKDVASWLGHKN------RA 57

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
               +  +I +++     + +   +  R LS IK   ++       +++  + ++   + 
Sbjct: 58  FGSATRDDIESYLIACDAEGLARATRARRLSAIKQIYRFAFDEGWRSDNPAIQIKGPGRQ 117

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            +LP+ L   +   L+D       + +  +  RN+ ++ LLY  G+R+SE + L      
Sbjct: 118 KALPKTLEVIEVDRLLDAARQSGRNLSDRL--RNTCMMELLYATGMRVSELVGLPVAAAR 175

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLP---LF--RGIR 234
            D   L + GKG K R+VPL P  R A+  +    D            P   LF  RG  
Sbjct: 176 GDPRMLLVLGKGGKERMVPLSPPARDALAAWLTTRDAAEEAAVAKGAAPSRFLFPSRGKS 235

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           G  L    F   I++     GLP  + + HTLRH+FATHLL+NG DLR+IQ++LGH  ++
Sbjct: 236 GH-LTRHRFYLLIKEFAVAGGLPPEAVSPHTLRHAFATHLLTNGADLRAIQALLGHADIA 294

Query: 294 TTQIYTNV 301
           TT+IYT+V
Sbjct: 295 TTEIYTHV 302


>gi|188581692|ref|YP_001925137.1| tyrosine recombinase XerD [Methylobacterium populi BJ001]
 gi|179345190|gb|ACB80602.1| tyrosine recombinase XerD [Methylobacterium populi BJ001]
          Length = 332

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 137/293 (46%), Gaps = 24/293 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L  L  ERG +  TL +Y  D   +L +LA   ++ I  +   +    ++RA+I+  
Sbjct: 17  QLFLDMLAAERGAAANTLAAYRRDLDDYLGYLA---QQGIDPE---EAQADQVRAYIASL 70

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   S  R LS I+ F ++L             +   +++  LP+ L+  +    V
Sbjct: 71  EPRGLKASSAARRLSCIRGFHRFLYAEGYCETDPTAPVAAPRRAKGLPKILSVAE----V 126

Query: 139 DNVLLHTSHETKWI-----DARNSA----ILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           D +L       +       +AR++A    +L LLY  GLR+SE ++L        +  L 
Sbjct: 127 DRLLATARDRVEAAGDDRTEARSAARMLCLLELLYATGLRVSELVALPRSAASARERYLV 186

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           ++GKG + R+VPL    R+A+  +      D           G     L    F R ++ 
Sbjct: 187 VKGKGGRERLVPLTELAREAMRAHVAHLTADGAWLFPADSESGH----LTRQAFARDLKV 242

Query: 250 LRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                GL     + H LRH+FA+HLL NG DLR +Q +LGH  +STTQIYT+V
Sbjct: 243 AAAAAGLRTDRVSPHVLRHAFASHLLQNGADLRIVQELLGHADVSTTQIYTHV 295


>gi|309807963|ref|ZP_07701891.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
 gi|308168814|gb|EFO70904.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
          Length = 166

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/154 (37%), Positives = 90/154 (58%), Gaps = 5/154 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AIL  LY  G+R+SE ++L   +I ++   +++ GKG K R++P+  +V  + ++ Y
Sbjct: 14  RDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPI-SNVAMSWIKKY 72

Query: 215 DLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            +   +  L      +  +F   RG  +      + I++  +  G+  + T HTLRH+FA
Sbjct: 73  QITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLAGINKNVTPHTLRHTFA 132

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           THLL NG DLR +Q ILGH  +STTQIYTN+  K
Sbjct: 133 THLLENGADLRIVQEILGHSDISTTQIYTNLTQK 166


>gi|288956928|ref|YP_003447269.1| integrase/recombinase [Azospirillum sp. B510]
 gi|288909236|dbj|BAI70725.1| integrase/recombinase [Azospirillum sp. B510]
          Length = 355

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 147/323 (45%), Gaps = 47/323 (14%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L  ERG +  T  +YE D      +LA   +  + ++        ++RA+++ +  
Sbjct: 44  FLDMLTAERGAAVNTRLAYERDLADLGRWLA---QRGVALEGA---GTEDLRAYLAVQ-G 96

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +    R++ R LS ++ F ++L      ++     + + K+   LP+ L+E +       
Sbjct: 97  KDGAPRTVARRLSAMRQFYRFLLSEGRRSDDPASPLDSPKQGRPLPKILSEAEV-----G 151

Query: 141 VLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            +L T+      +  R  A+L +LY  GLR+SE + L    IM D   L ++GKG K R+
Sbjct: 152 AMLSTAEARGGPEGLRLVALLEVLYATGLRVSELVGLPMTAIMRDGRGLLVRGKGGKERM 211

Query: 200 VPLLPSVRKAILEYYDL----------------------CPFDLNLNIQLPLFRGIRGKP 237
           VPL      A+  Y  +                       PF     I    +       
Sbjct: 212 VPLSDPALAALAAYIPVRAHFIPPGTGAGGGGAGGEGGHSPFLFPSRISAEGY------- 264

Query: 238 LNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           L    F + ++QL    G+ P   + H LRH+FATHLL +G DLRS+Q +LGH  ++TTQ
Sbjct: 265 LTRQRFAQLLKQLAIDAGIDPEKVSPHVLRHAFATHLLDHGADLRSVQKMLGHADIATTQ 324

Query: 297 IYTNVNSKNGGDWMMEIYDQTHP 319
           IYT+V ++     + ++    HP
Sbjct: 325 IYTHVVTER----LRKVMHDHHP 343


>gi|260894011|ref|YP_003240105.1| integrase family protein [Ammonifex degensii KC4]
 gi|260866150|gb|ACX53255.1| integrase family protein [Ammonifex degensii KC4]
          Length = 288

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 140/287 (48%), Gaps = 25/287 (8%)

Query: 20  NWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           +WL   E+    RGLS  ++++Y    R+F+ +    + E    + +  L   + R ++ 
Sbjct: 3   DWLSGFEVSCLRRGLSPSSVRAYLGVVRRFVAWWEGTSGEAFDPRAVTPLDVADYRRYL- 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             R + +   ++  +L  +KSF ++LK+ +   ++    ++ + +    PR L  ++   
Sbjct: 62  --RGRGLKPATVNFNLEAVKSFFRWLKEERALPDNPAEGVKKVPEVKPSPRWLTRREVGL 119

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQ-GK 193
           L   V  + +        ++ A+  LL   GLR+SEA+SL  ++++  +    +R++ GK
Sbjct: 120 LARAVQRYGT-------VKDRALFALLLHAGLRVSEAVSLRLEDVVVRERSGFVRVRYGK 172

Query: 194 GDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K R VPL  +VR+ + EY  +L P          LF G +G P+ P   Q+ ++   R
Sbjct: 173 GGKYREVPLNVTVRRVLKEYLAELPPQGGGW-----LFPGKKG-PMTPRAVQKRLKFFGR 226

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
             G+    T H LRH+F   L+  G  L  +  + GH RL TT +YT
Sbjct: 227 IAGV--EVTPHKLRHTFCKWLIDAGESLDKVALLAGHARLDTTAVYT 271


>gi|317405888|gb|EFV86170.1| integrase/recombinase [Achromobacter xylosoxidans C54]
          Length = 327

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 135/295 (45%), Gaps = 26/295 (8%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLA---FYTEEKI---------------TIQTIRQLSY 68
           +E GLS  TL +Y  D   F  +L     Y  E                   + + +   
Sbjct: 23  LEDGLSANTLAAYRRDLTGFARWLEDPEAYAREMADRYGDAASAHALPAGPAKALAEAGK 82

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            +I A+ + R  +     +  R L+ ++ F  +  +         L +   K+   LP+ 
Sbjct: 83  ADIEAWFAFRHEETRAT-TANRRLAALRRFYAWALREHRAAHDPCLTLVAAKQPPRLPKT 141

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+E+Q      + LL      +    R+ A+L +LY  GLR+SE + +   ++  ++  +
Sbjct: 142 LSEQQV-----DALLRAPDLNEPRGLRDRAMLEMLYATGLRVSELVGVRALDVSLNEGVV 196

Query: 189 RIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRY 246
           R+  GKG K R+VPL       I +Y      +L    +   LF   R + ++   F + 
Sbjct: 197 RVVLGKGGKDRLVPLGAEAAHWIDQYMKTARPELAAGRVSDALFITGRAEAMSRQAFWQL 256

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +++     G+    + H LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 257 VKKYAVLAGVHAPLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHV 311


>gi|121601884|ref|YP_988378.1| tyrosine recombinase XerD [Bartonella bacilliformis KC583]
 gi|120614061|gb|ABM44662.1| tyrosine recombinase XerD [Bartonella bacilliformis KC583]
          Length = 312

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 151/317 (47%), Gaps = 24/317 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY--TEIRAFISKR 78
           +L+ +  ERG S  TL +Y+ D +        + ++K++  ++   S    ++ + +S  
Sbjct: 10  FLEMMSAERGASAHTLAAYQHDLQ--------WAQDKLSSCSVSLFSARKEDLISLLSLM 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++ F ++L   K+  +    ++   ++ + LP+ ++E     L+
Sbjct: 62  HKAGFAATSQARRLSTLRQFYQFLYAEKLREDDPSGDIDAPRQGHPLPKIMSEDVVTKLL 121

Query: 139 DNVLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           D   L T+      +  +   R   ++ +LY  GLRISE +SL  Q +   +  + ++GK
Sbjct: 122 DFAQLETNQAEYGSKNYFRALRLQVLIEMLYATGLRISELVSLPVQTVRGKEQYILVRGK 181

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVF-QRYIRQLR 251
           G K R+V L    R+ + E+  L   D   +   P LF            F  R ++ L 
Sbjct: 182 GGKERMVLLSAKARQVLSEW--LVLRDQGKDATSPYLFPAHSSTGYIARQFIARGLKDLA 239

Query: 252 RYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           +  G+     + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V        +
Sbjct: 240 KRAGIRGDCFSPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQIYTHVLETG----L 295

Query: 311 MEIYDQTHPSITQKDKK 327
             + ++ HP   Q   K
Sbjct: 296 YHLVNEHHPLADQDKAK 312


>gi|241758661|ref|ZP_04756775.1| tyrosine recombinase XerD [Neisseria flavescens SK114]
 gi|241321172|gb|EER57368.1| tyrosine recombinase XerD [Neisseria flavescens SK114]
          Length = 293

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 139/283 (49%), Gaps = 20/283 (7%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ--TIRQLSYTEIRAFISKRR 79
           L++L ++  LS  TLQSY  D  +    LA   ++ ++     +    Y E     S+  
Sbjct: 12  LESLWLQDRLSHNTLQSYRRDLVKVAARLAECGQDWLSADEFALSDSVYAEGEKSTSQ-- 69

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                     R+LS  K    +L++     ++    ++  K    LP  + E Q   L+ 
Sbjct: 70  ---------ARALSACKRMYGWLEETGQRADNPTRFLKAPKSERKLPTLITEAQIDALLA 120

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              + TSH       R+ A+L ++Y  GLR++EA+ LT  +I   + ++R  GKGDK+R+
Sbjct: 121 APDVETSH-----GLRDKALLEVMYATGLRVTEAVKLTLSDIDLHRGSIRTIGKGDKLRL 175

Query: 200 VPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VPL       +  Y +   P  L   I   +F   +   ++  +    +++     G+  
Sbjct: 176 VPLGQEAAYWVERYCNESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKEYAEAAGIA- 234

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           S + H LRH+FATHL+++G DLRS+Q +LGH  ++TTQIYT+V
Sbjct: 235 SLSPHGLRHAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHV 277


>gi|306843458|ref|ZP_07476059.1| tyrosine recombinase XerD [Brucella sp. BO1]
 gi|306276149|gb|EFM57849.1| tyrosine recombinase XerD [Brucella sp. BO1]
          Length = 307

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 134/302 (44%), Gaps = 38/302 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N+L+ +  ERG ++ TL+SY  D       LA         +T        IR  +   
Sbjct: 8   ENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAET------GHIRMTLDTM 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R LS ++ F ++L       +     +   KK   LP+ ++ +    L+
Sbjct: 62  AAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGKLL 121

Query: 139 DNVLLHTSHET---KWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           D   L         + I A R  A+L  LY  GLR+SE + L       D   L ++GKG
Sbjct: 122 DRAALEADEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKG 181

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------- 243
            K R+VPL    R+A+ ++       L L   LP      G   NP +F           
Sbjct: 182 SKDRMVPLSRKAREALQKF-------LTLRDSLP------GSDDNPWLFPAFSESGHLAR 228

Query: 244 QRYIRQLRRYLGLPLS----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           Q + R+L+             + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT
Sbjct: 229 QVFARELKGLAARAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYT 288

Query: 300 NV 301
           +V
Sbjct: 289 HV 290


>gi|254718076|ref|ZP_05179887.1| site-specific tyrosine recombinase XerD [Brucella sp. 83/13]
 gi|306837278|ref|ZP_07470164.1| tyrosine recombinase XerD [Brucella sp. NF 2653]
 gi|306407650|gb|EFM63843.1| tyrosine recombinase XerD [Brucella sp. NF 2653]
          Length = 307

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 135/302 (44%), Gaps = 38/302 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N+L+ +  ERG ++ TL+SY  D       LA         +T        IR  +   
Sbjct: 8   ENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAET------GHIRMTLDTM 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R LS ++ F ++L       +     +   KK   LP+ ++ +    L+
Sbjct: 62  AAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGKLL 121

Query: 139 DNVLLHTSHET---KWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           D   L  +      + I A R  A+L  LY  GLR+SE + L       D   L ++GKG
Sbjct: 122 DRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKG 181

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------- 243
            K R+VPL    R+A+ ++       L L   LP      G   NP +F           
Sbjct: 182 SKDRMVPLSRKAREALQKF-------LTLRDSLP------GSDDNPWLFPAFSESGHLAR 228

Query: 244 QRYIRQLRRYLGLPLS----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           Q + R+L+             + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT
Sbjct: 229 QVFARELKGLAARAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYT 288

Query: 300 NV 301
           +V
Sbjct: 289 HV 290


>gi|124006143|ref|ZP_01690979.1| integrase, site-specific recombinase [Microscilla marina ATCC
           23134]
 gi|123988320|gb|EAY27973.1| integrase, site-specific recombinase [Microscilla marina ATCC
           23134]
          Length = 296

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 141/292 (48%), Gaps = 16/292 (5%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T+ SY  D +QF    + Y +E   ++      +  IR+++ +   +K    S+ R 
Sbjct: 15  SQNTITSYNHDLQQF----STYLQEIHRLEEPEHADHNMIRSWVLQLTEEKANVTSINRK 70

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           ++ +KSF KYL+ +    ++    ++ +K     P  + E++ L L++ V      E   
Sbjct: 71  IATLKSFYKYLQNQGFIKKNPAQRLKPMKVPKKAPIFVEEEKMLQLLNTVQYPAGIE--- 127

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG----DKIRIVPLLPSVR 207
              R+   + +LYG G+R+SE ++L  Q++   +  +RI  K     +K R + +   + 
Sbjct: 128 -GLRDKFTIEILYGTGMRLSELINLQIQHVDFQKLRIRIPEKNNLKKEKERNISVAKPLL 186

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             + +Y           +   +     GKP  P +  R +++  + +      + H LRH
Sbjct: 187 DLLQQYEKSKQQTYGKLVHNHVLVTDEGKPAYPMLIYRTVKKYLQLITDQEKKSPHVLRH 246

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           SFATHLL+ G DL  ++ +LGH  LSTTQ Y    S N  D + EI++Q HP
Sbjct: 247 SFATHLLNKGADLHEVKDMLGHTTLSTTQAY----SHNSLDQIKEIFNQAHP 294


>gi|221068555|ref|ZP_03544660.1| tyrosine recombinase XerD [Comamonas testosteroni KF-1]
 gi|220713578|gb|EED68946.1| tyrosine recombinase XerD [Comamonas testosteroni KF-1]
          Length = 318

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 146/302 (48%), Gaps = 17/302 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            ++  L +E GLS  TL +Y  D      +LA     K+    +      +++ + + R 
Sbjct: 30  EFIDALLLEDGLSHNTLSAYRRDLTAAARWLAQLQPPKVLDAALE----ADLQGYFTAR- 84

Query: 80  TQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            +     S  R L+ ++ +  + L++++I  +  +  M   K+    P+ L ++Q   L+
Sbjct: 85  VEGTKATSSNRRLTVLRRYFHWALREKRIAADPTV-RMLAAKQPPRTPKTLTQEQVEALL 143

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D   + T+     +  R+ A+L L+Y  GLR+SE + +    +      LR+ GKG K R
Sbjct: 144 DAPDVETA-----LGLRDRAMLELMYASGLRVSELVGVRMHELDLRSGVLRVTGKGRKER 198

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP     +  +  Y       +    Q   +F   RG  ++  +F   +++  +  G+ 
Sbjct: 199 LVPFGQEAQHWLERYLQQARAAILGGQQTEEVFVTQRGAGMSRVMFWVIVKKCAQIAGIN 258

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + HTLRH+FATHLL++G DLR +Q +LGH  +STT IYT+V  +     +  ++ + 
Sbjct: 259 SPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHVARER----LKALHAEH 314

Query: 318 HP 319
           HP
Sbjct: 315 HP 316


>gi|467161|gb|AAA50925.1| u0247d [Mycobacterium leprae]
          Length = 316

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 146/316 (46%), Gaps = 28/316 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L  L IER ++  TL SY  D    LI  + +  ++  I+ + ++   ++  F+   
Sbjct: 11  QGYLDYLIIERSIAANTLSSYRRD----LIRYSKHLSDR-GIEDLAKVGEHDVSEFLVAL 65

Query: 79  RTQKIGD----------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           R    GD           S  R+L  ++   ++     +        +R       LP++
Sbjct: 66  RR---GDPDSGVAALSAVSAARALIAVRGLHRFAVAEGLVDLDVARAVRPPTPGRRLPKS 122

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L   + L L+++V   +  +   +  RN A+L LLY  G RISEA+ L   ++     T+
Sbjct: 123 LTVDEVLALLESVGGESGADGPLV-LRNRALLELLYSTGSRISEAVGLDVDDVDTQARTV 181

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
            +QGKG K R+VP+     +A+  Y      DL      +     +F   RG  L+    
Sbjct: 182 LLQGKGGKQRLVPVGRPAVQALDAYLVRGRSDLARRGPGMLATPAIFLNARGGRLSRQSA 241

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            + ++    + G+    + H LRHSFATHLL  G D+R +Q ++GH  ++TTQIYT V  
Sbjct: 242 WQVLQDAAEHAGITSGVSPHMLRHSFATHLLEGGADIRVVQELMGHASVTTTQIYTLVTV 301

Query: 304 KNGGDWMMEIYDQTHP 319
           +     + E++   HP
Sbjct: 302 QA----LREVWAGAHP 313


>gi|265983027|ref|ZP_06095762.1| tyrosine recombinase xerD [Brucella sp. 83/13]
 gi|264661619|gb|EEZ31880.1| tyrosine recombinase xerD [Brucella sp. 83/13]
          Length = 309

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 135/302 (44%), Gaps = 38/302 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N+L+ +  ERG ++ TL+SY  D       LA         +T        IR  +   
Sbjct: 10  ENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAET------GHIRMTLDTM 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R LS ++ F ++L       +     +   KK   LP+ ++ +    L+
Sbjct: 64  AAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGKLL 123

Query: 139 DNVLLHTSHET---KWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           D   L  +      + I A R  A+L  LY  GLR+SE + L       D   L ++GKG
Sbjct: 124 DRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKG 183

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------- 243
            K R+VPL    R+A+ ++       L L   LP      G   NP +F           
Sbjct: 184 SKDRMVPLSRKAREALQKF-------LTLRDSLP------GSDDNPWLFPAFSESGHLAR 230

Query: 244 QRYIRQLRRYLGLPLS----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           Q + R+L+             + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT
Sbjct: 231 QVFARELKGLAARAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYT 290

Query: 300 NV 301
           +V
Sbjct: 291 HV 292


>gi|256371915|ref|YP_003109739.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008499|gb|ACU54066.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331]
          Length = 299

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 115/234 (49%), Gaps = 11/234 (4%)

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           R ++R+ S ++   +Y ++     +  +  +     + +LPRAL   +   L+++V    
Sbjct: 70  RGVQRAASALRGLFRYAQRVGARADDPMEGIHAPGTAVALPRALARDEVERLIESV---- 125

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
                   AR+ AIL +LYG G+R+SE    T   I   +  + + GK  + R+VP+   
Sbjct: 126 -GTADVAGARDRAILEVLYGSGVRVSELCGFTLDTIAQGR-WVPVVGKRGRERLVPISAP 183

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            R A+ ++       L    ++ LF  +RG P+        ++Q    +GL    + H L
Sbjct: 184 ARDALEQWVVRWRPQLAPKHRM-LFVNLRGAPITRQGVWLVLKQRASRVGLGDRVSPHVL 242

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           RHS A H++  G DLR +Q ILGH  L+TT++YT V+  +    +  +Y + HP
Sbjct: 243 RHSLAVHMVEAGADLRVVQEILGHASLATTELYTKVSEGH----VDAVYQRAHP 292


>gi|260655773|ref|ZP_05861242.1| tyrosine recombinase XerD [Jonquetella anthropi E3_33 E1]
 gi|260629389|gb|EEX47583.1| tyrosine recombinase XerD [Jonquetella anthropi E3_33 E1]
          Length = 308

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 130/252 (51%), Gaps = 20/252 (7%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEK 132
           FI+  R Q +   +++++++ ++S+++Y ++   +  ++ L +  L  K   LP+ L++ 
Sbjct: 59  FIAAMREQDLASSTVQQTMAALRSWVRY-RQSTGSAAASALRLPALPDKPRRLPQVLSDG 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +    +D +L   S E+ W+D R+  IL +L  CGLR SE  SLT  ++  D   L ++G
Sbjct: 118 E----IDRLLESCSGES-WMDVRDRTILQILADCGLRASEICSLTLASVDMDTRFLHVRG 172

Query: 193 KGDKIRIVPLLPSVRKAILEY----YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           KG+K R VP   SV   + ++     D  P     +    LF    G  L      R IR
Sbjct: 173 KGNKDRSVPFGASVADWLTKWLAVRADGHPTGGARSF---LFASRTGDRLTRIDLWRLIR 229

Query: 249 QLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +     G+  +    H LRHS AT LL  G DLR++Q  LGH  + TT+ YT+ + +   
Sbjct: 230 RRGERAGVAKARLHPHVLRHSVATRLLRRGMDLRTLQEFLGHSSIGTTEKYTHFDLE--- 286

Query: 308 DWMMEIYDQTHP 319
             + ++YD+ HP
Sbjct: 287 --LRDVYDRCHP 296


>gi|296454352|ref|YP_003661495.1| phage integrase family protein [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183783|gb|ADH00665.1| phage integrase family protein [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 353

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 144/335 (42%), Gaps = 60/335 (17%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +++  L+  RGLS  TL++Y  D    L        E   +  + +++  ++R++++   
Sbjct: 12  SFVSYLKSNRGLSANTLKAYRADLTACLHLF-----ELRGVTDLNEITLDDLRSWMAVE- 65

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           ++     S+ R    ++ F  +  +  +TT      +      ++LP  L E QA  L+D
Sbjct: 66  SRDHARSSMARKTVAVRGFFAWAYEHGVTTTDPAATLMTPSIPSTLPAVLTESQAEQLLD 125

Query: 140 NVLLHTSHETKWID--------------------------------------------AR 155
            V  H     ++ D                                             R
Sbjct: 126 -VAEHAVATNQYKDDGGAAAASGSGSGKAADKSADIVNRSEAPARADKRDNARATAESQR 184

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
           N+AIL LLY  G+R++E +S+   +I     T+++ GKG+K R+VP     ++A+  + +
Sbjct: 185 NAAILELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRALETWLE 244

Query: 216 --------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                        +       LF G RG  ++  + +  + +  R  G+P   + H LRH
Sbjct: 245 QGRPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVP-DISPHALRH 303

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           S ATH+L  G DLR +Q +LGH  L TTQ YT+V+
Sbjct: 304 SAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVS 338


>gi|124516260|gb|EAY57768.1| putative phage integrase family protein [Leptospirillum rubarum]
 gi|206603101|gb|EDZ39581.1| Putative phage integrase family protein [Leptospirillum sp. Group
           II '5-way CG']
          Length = 321

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 142/292 (48%), Gaps = 28/292 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L+ L  + G S  TL +Y  D   F  FL    ++  +  +I +   T   +++   
Sbjct: 27  RDFLEEL-AQSGHSPRTLMAYRRDLDAFRRFLLLRGKDSPSDPSIDR---TLALSYLFDL 82

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q+   RS+ R LS ++SF ++L ++     +   ++   ++  ++P  L+E++  TL 
Sbjct: 83  EQQEYRPRSVLRILSSLRSFYQWLCRKGRCPSNPFEDLSGPRRPKTVPTVLSEREMATL- 141

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
               L +     W D R++ +L L Y  G+R+SE   L   ++      ++++GKG+K R
Sbjct: 142 ----LESRPGNSWEDRRDTVMLELFYLTGIRLSELAGLVRGDLSPGMDRIQVRGKGNKER 197

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL---- 254
           +VPLL   R+ + ++              PLF       ++PG     + Q+ R +    
Sbjct: 198 MVPLLGLTRELLRDF-----LSEEGGPGAPLF------AVSPGGEALSVHQIGRIVRRRV 246

Query: 255 ---GL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              GL     T HT RHS ATHLL  G DLR IQ +LGH  L TTQ YT+V 
Sbjct: 247 RLSGLGDRGVTPHTFRHSCATHLLDRGMDLRKIQELLGHQSLGTTQKYTHVG 298


>gi|256841123|ref|ZP_05546630.1| tyrosine recombinase XerC [Parabacteroides sp. D13]
 gi|256736966|gb|EEU50293.1| tyrosine recombinase XerC [Parabacteroides sp. D13]
          Length = 302

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 138/282 (48%), Gaps = 8/282 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L  L  ER  S  T+ +Y  D  QF  ++    E +  +    ++    +R++I   
Sbjct: 4   DDFLNYLRYERNYSNYTIGAYSKDLDQFQRYV---REHREGVFDPGEIDSDFVRSWIVCL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +K    S+ R LS +KSF K+L KR I + + +  +   K    LP  + + +   L+
Sbjct: 61  MDEKFSPVSVNRKLSSLKSFFKFLMKRGIVSANPLRLVSGPKTKKPLPCFIKDSELEALL 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D        +  +   RN  ++ +LY  G+R SE + +   ++  +   +++ GK +K R
Sbjct: 121 DG----DGFDEDFEGVRNRLVIEMLYDTGMRRSELIGIRNVDVDYEAMQVKVTGKRNKQR 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++P    ++  +L Y ++   ++    +    R   G  L+ G+    +++    + +  
Sbjct: 177 LIPFAEGLKNLMLAYTEVRDREVEAAGEWFFVRK-NGNQLSTGIVYNIVKKQLSEIPMLA 235

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             + H LRHSFAT +L+NG +L +++ +LGH  L++T +YT+
Sbjct: 236 KRSPHVLRHSFATSMLNNGAELNAVKDLLGHSSLASTSVYTH 277


>gi|261217851|ref|ZP_05932132.1| tyrosine recombinase xerD [Brucella ceti M13/05/1]
 gi|261321299|ref|ZP_05960496.1| tyrosine recombinase xerD [Brucella ceti M644/93/1]
 gi|260922940|gb|EEX89508.1| tyrosine recombinase xerD [Brucella ceti M13/05/1]
 gi|261293989|gb|EEX97485.1| tyrosine recombinase xerD [Brucella ceti M644/93/1]
          Length = 309

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 134/302 (44%), Gaps = 38/302 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N+L+ +  ERG ++ TL+SY  D       LA         +T        IR  +   
Sbjct: 10  ENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAET------GHIRMTLDTM 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R LS ++ F ++L       +     +   KK   LP+ ++ +    L+
Sbjct: 64  AAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGFLDAPKKQKPLPKIMSVENVGKLL 123

Query: 139 DNVLLHTSHET---KWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           D   L  +      + I A R  A+L  LY  GLR+SE + L       D   L ++GKG
Sbjct: 124 DRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKG 183

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------- 243
            K R+VPL    R A+ ++       L L   LP      G   NP +F           
Sbjct: 184 SKDRMVPLSRKARDALQKF-------LTLRDSLP------GSDDNPWLFPAFSESGHLAR 230

Query: 244 QRYIRQLRRYLGLPLS----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           Q + R+L+             + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT
Sbjct: 231 QVFARELKGLAARAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYT 290

Query: 300 NV 301
           +V
Sbjct: 291 HV 292


>gi|254713562|ref|ZP_05175373.1| site-specific tyrosine recombinase XerD [Brucella ceti M644/93/1]
 gi|254716083|ref|ZP_05177894.1| site-specific tyrosine recombinase XerD [Brucella ceti M13/05/1]
          Length = 307

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 134/302 (44%), Gaps = 38/302 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N+L+ +  ERG ++ TL+SY  D       LA         +T        IR  +   
Sbjct: 8   ENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAET------GHIRMTLDTM 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R LS ++ F ++L       +     +   KK   LP+ ++ +    L+
Sbjct: 62  AAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGFLDAPKKQKPLPKIMSVENVGKLL 121

Query: 139 DNVLLHTSHET---KWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           D   L  +      + I A R  A+L  LY  GLR+SE + L       D   L ++GKG
Sbjct: 122 DRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKG 181

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------- 243
            K R+VPL    R A+ ++       L L   LP      G   NP +F           
Sbjct: 182 SKDRMVPLSRKARDALQKF-------LTLRDSLP------GSDDNPWLFPAFSESGHLAR 228

Query: 244 QRYIRQLRRYLGLPLS----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           Q + R+L+             + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT
Sbjct: 229 QVFARELKGLAARAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYT 288

Query: 300 NV 301
           +V
Sbjct: 289 HV 290


>gi|150017415|ref|YP_001309669.1| site-specific tyrosine recombinase XerC [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903880|gb|ABR34713.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 329

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 106/340 (31%), Positives = 160/340 (47%), Gaps = 56/340 (16%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE----- 55
           ++ NNLPE +         ++L  LE  +  S  T+  Y  D   F  F+  Y       
Sbjct: 8   LKNNNLPESLV--------DFLNYLETIKSTSINTIDGYRIDLTIFFRFMMIYKGKVNSD 59

Query: 56  ----EKITIQTI-----RQLSYTEIRAFISKRRTQKIGDRSL---KRSLSGIKSFLKYL- 102
               E I I  I     R +   ++ AF+S   T+K  D S     R ++ +KSF K+L 
Sbjct: 60  SVEFEDIDISVIDDEFLRGIKLRDLYAFLS--FTEKYRDNSSYARARKVATLKSFFKFLF 117

Query: 103 KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
            K K+ TE+  L + + K +   P  L   Q++ L++++     ++  +  +R+  IL  
Sbjct: 118 GKAKVITENPALELESPKINKRHPVYLTLNQSIHLLESL---NKNDKNY--SRDYCILMF 172

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
              CG+R+SE  S+    I DD  TL I GKG+K R V L  +  KA+  Y         
Sbjct: 173 FLNCGMRLSELCSIQIDKIRDD--TLTIIGKGNKERTVYLNDACLKALANY--------- 221

Query: 223 LNIQ-----LP-----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFAT 271
           LN++     LP     LF   R  P+N    +  I++     GL     T H LRH+ AT
Sbjct: 222 LNVRDDSKALPDNKKFLFLSSRNGPINKRTVEIMIKKHITNAGLTDDKYTPHKLRHTAAT 281

Query: 272 HLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +   G  D+RS+QSILGH  +STTQIYT+V+  +  D +
Sbjct: 282 LMYKYGNVDIRSLQSILGHTNISTTQIYTHVDDDSLRDAV 321


>gi|302345052|ref|YP_003813405.1| putative tyrosine recombinase XerC [Prevotella melaninogenica ATCC
           25845]
 gi|302149339|gb|ADK95601.1| putative tyrosine recombinase XerC [Prevotella melaninogenica ATCC
           25845]
          Length = 294

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 150/306 (49%), Gaps = 23/306 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  ++ ER  S +T+ +Y  D  +F         E+   +   QLS+  I + I + 
Sbjct: 5   EKFLDYIKFERNYSPMTVINYRKDLTEF---------ERFYKELEPQLSWESIDSDIVRN 55

Query: 79  RTQKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             + + DR     S+ R LS ++SF ++  +RK+  +  +  ++  K+  +LP+ L E +
Sbjct: 56  WMEYMMDRGNSASSVNRRLSALRSFYRFALRRKLIEKDPVHGLQGPKRQKTLPQFLKESE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D+ +   S++    D     I+   Y  G+R+SE + L  ++I +    +++ GK
Sbjct: 116 MERLLDSKMWTDSYK----DVLERTIIITFYVTGIRLSELIGLDDKDIDNVTCEIKVTGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            +K RIVP    +     +Y ++    +  + +   F+  +GK +     +  +++    
Sbjct: 172 RNKQRIVPFGKELADVFAQYQEVRNATVKGDSK-AFFQTEKGKRMTTAQVRTLVKKNLSK 230

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +      + H LRH+FAT +L++   L S++ +LGH  LSTT+IYT+   +     + ++
Sbjct: 231 VSTLKKRSPHVLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQ----LKKV 286

Query: 314 YDQTHP 319
           Y   HP
Sbjct: 287 YKNAHP 292


>gi|327399621|ref|YP_004340490.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411]
 gi|327182250|gb|AEA34431.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411]
          Length = 276

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 142/292 (48%), Gaps = 43/292 (14%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           SK T+++Y  DT++FL             +  +     ++  F+ K   + +   ++ R 
Sbjct: 18  SKNTIKAYLTDTQEFL-------------KNTKGFDRDDVEVFLVKLFDRGLSSSTITRK 64

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L+ +  F ++LK +     + +  +   K+   LP+ L     + L++ +          
Sbjct: 65  LASLSIFFEFLKLKGKVRINPLRVIDKPKQKKMLPKFLEVDDVVALLEGI---------- 114

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI- 210
            D R+ A+  L+Y   LR SEAL L   +I  +   +RI+ KG K+  VP+  S R A+ 
Sbjct: 115 KDKRDRALFELIYSSSLRASEALGLDINDIDFENLRIRIRRKGGKVVYVPI--SQRAALF 172

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL---STTAHTLRH 267
           L+ Y      L    + PLF    GK L+     RY+R+L +   L       + HTLRH
Sbjct: 173 LKDY------LKDRKEGPLFLNRYGKRLS----DRYLRRLIKKYALSSIFKDVSPHTLRH 222

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           S ATHLL++G D+R +Q +LGH  +  TQIYT++N K     + + YD THP
Sbjct: 223 SKATHLLNSGMDIRLLQRLLGHSSIKATQIYTHLNLKE----LAQTYDSTHP 270


>gi|28493064|ref|NP_787225.1| integrase/recombinase [Tropheryma whipplei str. Twist]
 gi|28476104|gb|AAO44194.1| integrase/recombinase [Tropheryma whipplei str. Twist]
          Length = 349

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 156/332 (46%), Gaps = 53/332 (15%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS--KRRTQKI 83
           ++E GLS  TLQ+Y        I+L++  E+    Q + +++   I  F+   +R T+K 
Sbjct: 30  KLELGLSDATLQTYR---NSLGIYLSWLGEQGT--QRLSEVNSNAIERFLEYRQRHTRK- 83

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
              +L  +++ +++F ++L      T +    ++  K   +LP  L+  + + L+     
Sbjct: 84  --STLANTVAALRTFHRHLVLEGRQTLNPTEKLQQPKVPKTLPHPLSLDEIINLLKAA-- 139

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGDKIRIVPL 202
             +++ + I  R+ A++ +LYG G RISEA+SL      + DQ+ LR+ GKG+K R+V  
Sbjct: 140 -DTNQAREISLRDRALIEVLYGTGARISEAVSLNVNAFAESDQNLLRLTGKGNKQRMVLF 198

Query: 203 LPSVRKAILEYYD------LCPFDLNLNIQ----------------------------LP 228
               R A+  Y        L    +  NI                             +P
Sbjct: 199 GSYARNAVDNYLQHSRPKLLARSHVYRNITDASTLKYRPTSSTIGDAEDGVLTATAAGVP 258

Query: 229 -LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
            LF   RGK L        IR+L     +    + H+LRHSFATH+L  G D+R++Q +L
Sbjct: 259 WLFLSNRGKRLTRQQAGNIIRKLGEAAEIGRYISPHSLRHSFATHMLQAGADIRTVQELL 318

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           GH  ++TT +YT V      D + E+Y  +HP
Sbjct: 319 GHSSINTTSVYTKVTI----DSLREVYATSHP 346


>gi|37522020|ref|NP_925397.1| integrase/recombinase [Gloeobacter violaceus PCC 7421]
 gi|35213019|dbj|BAC90392.1| glr2451 [Gloeobacter violaceus PCC 7421]
          Length = 289

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 126/287 (43%), Gaps = 28/287 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++WL +L   R L+  TL++Y+ D  +F  F+     E +  QT            + K 
Sbjct: 8   EHWLDHLIAARSLAGNTLKAYQRDLEEFARFV---ESEHLDWQTFGATGTHHFAQILQKT 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNEKQALTL 137
            T     RS  R LS +++F ++   +           R L  +   LPR L+  Q   L
Sbjct: 65  HT----PRSAARKLSALRTFYRHALVQGWAGGVPPACTRTLPSAERGLPRILSVAQTEKL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +++                SA+L LLY  GL+  E   L  +++   ++ L +Q    + 
Sbjct: 121 IESA----------ASPLESAVLELLYATGLKAGELCELRVRDVAFAEAYLSVQPAASQP 170

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYL 254
           R+VP+      A+  Y    P        LP   LF G + +PLN     R +R+     
Sbjct: 171 RVVPVGEPALAAVEAYLGSEPV-------LPERWLFVGRQNRPLNRFHIYRIVREAAARS 223

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            +    T  TLRHSFA HLL  G DL +++ +LGH  L+TT IYT +
Sbjct: 224 AIDWPVTPDTLRHSFAVHLLEGGADLATVRELLGHASLATTGIYTRL 270


>gi|148559822|ref|YP_001259843.1| site-specific tyrosine recombinase XerD [Brucella ovis ATCC 25840]
 gi|163844051|ref|YP_001628455.1| site-specific tyrosine recombinase XerD [Brucella suis ATCC 23445]
 gi|254700665|ref|ZP_05162493.1| site-specific tyrosine recombinase XerD [Brucella suis bv. 5 str.
           513]
 gi|254707447|ref|ZP_05169275.1| site-specific tyrosine recombinase XerD [Brucella pinnipedialis
           M163/99/10]
 gi|254709011|ref|ZP_05170822.1| site-specific tyrosine recombinase XerD [Brucella pinnipedialis
           B2/94]
 gi|256030536|ref|ZP_05444150.1| site-specific tyrosine recombinase XerD [Brucella pinnipedialis
           M292/94/1]
 gi|256059999|ref|ZP_05450181.1| site-specific tyrosine recombinase XerD [Brucella neotomae 5K33]
 gi|256158528|ref|ZP_05456422.1| site-specific tyrosine recombinase XerD [Brucella ceti M490/95/1]
 gi|256253942|ref|ZP_05459478.1| site-specific tyrosine recombinase XerD [Brucella ceti B1/94]
 gi|256370430|ref|YP_003107941.1| tyrosine recombinase [Brucella microti CCM 4915]
 gi|260169442|ref|ZP_05756253.1| site-specific tyrosine recombinase XerD [Brucella sp. F5/99]
 gi|148371079|gb|ABQ61058.1| tyrosine recombinase XerD [Brucella ovis ATCC 25840]
 gi|163674774|gb|ABY38885.1| tyrosine recombinase XerD [Brucella suis ATCC 23445]
 gi|256000593|gb|ACU48992.1| tyrosine recombinase [Brucella microti CCM 4915]
          Length = 307

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 134/302 (44%), Gaps = 38/302 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N+L+ +  ERG ++ TL+SY  D       LA         +T        IR  +   
Sbjct: 8   ENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAET------GHIRMTLDTM 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R LS ++ F ++L       +     +   KK   LP+ ++ +    L+
Sbjct: 62  AAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGKLL 121

Query: 139 DNVLLHTSHET---KWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           D   L  +      + I A R  A+L  LY  GLR+SE + L       D   L ++GKG
Sbjct: 122 DRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKG 181

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------- 243
            K R+VPL    R A+ ++       L L   LP      G   NP +F           
Sbjct: 182 SKDRMVPLSRKARDALQKF-------LTLRDSLP------GSDDNPWLFPAFSESGHLAR 228

Query: 244 QRYIRQLRRYLGLPLS----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           Q + R+L+             + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT
Sbjct: 229 QVFARELKGLAARAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYT 288

Query: 300 NV 301
           +V
Sbjct: 289 HV 290


>gi|225626413|ref|ZP_03784452.1| tyrosine recombinase XerD [Brucella ceti str. Cudo]
 gi|261221082|ref|ZP_05935363.1| tyrosine recombinase xerD [Brucella ceti B1/94]
 gi|261314935|ref|ZP_05954132.1| tyrosine recombinase xerD [Brucella pinnipedialis M163/99/10]
 gi|261316509|ref|ZP_05955706.1| tyrosine recombinase xerD [Brucella pinnipedialis B2/94]
 gi|261323973|ref|ZP_05963170.1| tyrosine recombinase xerD [Brucella neotomae 5K33]
 gi|261751173|ref|ZP_05994882.1| tyrosine recombinase xerD [Brucella suis bv. 5 str. 513]
 gi|261758967|ref|ZP_06002676.1| tyrosine recombinase xerD [Brucella sp. F5/99]
 gi|265987583|ref|ZP_06100140.1| tyrosine recombinase xerD [Brucella pinnipedialis M292/94/1]
 gi|265997042|ref|ZP_06109599.1| tyrosine recombinase xerD [Brucella ceti M490/95/1]
 gi|294851262|ref|ZP_06791935.1| tyrosine recombinase XerD [Brucella sp. NVSL 07-0026]
 gi|225618070|gb|EEH15113.1| tyrosine recombinase XerD [Brucella ceti str. Cudo]
 gi|260919666|gb|EEX86319.1| tyrosine recombinase xerD [Brucella ceti B1/94]
 gi|261295732|gb|EEX99228.1| tyrosine recombinase xerD [Brucella pinnipedialis B2/94]
 gi|261299953|gb|EEY03450.1| tyrosine recombinase xerD [Brucella neotomae 5K33]
 gi|261303961|gb|EEY07458.1| tyrosine recombinase xerD [Brucella pinnipedialis M163/99/10]
 gi|261738951|gb|EEY26947.1| tyrosine recombinase xerD [Brucella sp. F5/99]
 gi|261740926|gb|EEY28852.1| tyrosine recombinase xerD [Brucella suis bv. 5 str. 513]
 gi|262551510|gb|EEZ07500.1| tyrosine recombinase xerD [Brucella ceti M490/95/1]
 gi|264659780|gb|EEZ30041.1| tyrosine recombinase xerD [Brucella pinnipedialis M292/94/1]
 gi|294819851|gb|EFG36850.1| tyrosine recombinase XerD [Brucella sp. NVSL 07-0026]
          Length = 309

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 134/302 (44%), Gaps = 38/302 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N+L+ +  ERG ++ TL+SY  D       LA         +T        IR  +   
Sbjct: 10  ENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAET------GHIRMTLDTM 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R LS ++ F ++L       +     +   KK   LP+ ++ +    L+
Sbjct: 64  AAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGKLL 123

Query: 139 DNVLLHTSHET---KWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           D   L  +      + I A R  A+L  LY  GLR+SE + L       D   L ++GKG
Sbjct: 124 DRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKG 183

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------- 243
            K R+VPL    R A+ ++       L L   LP      G   NP +F           
Sbjct: 184 SKDRMVPLSRKARDALQKF-------LTLRDSLP------GSDDNPWLFPAFSESGHLAR 230

Query: 244 QRYIRQLRRYLGLPLS----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           Q + R+L+             + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT
Sbjct: 231 QVFARELKGLAARAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYT 290

Query: 300 NV 301
           +V
Sbjct: 291 HV 292


>gi|34499125|ref|NP_903340.1| integrase/recombinase [Chromobacterium violaceum ATCC 12472]
 gi|34104976|gb|AAQ61332.1| integrase/recombinase [Chromobacterium violaceum ATCC 12472]
          Length = 295

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 160/314 (50%), Gaps = 46/314 (14%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +E GLS+ TL +Y  D  +    LA   E  ++++T   L+  E +A ++   +
Sbjct: 11  FLDQLWLEDGLSQNTLAAYRRDLSKLAARLA---ERGVSLETA-TLADLE-QALLAGVAS 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +K   R+  R  S ++ + ++L +  +  +     + + K+   LP++++E     L+D 
Sbjct: 66  EKPATRA--RLTSALRRYYQHLSRNGVRQDDPSARLASPKQGLRLPKSMSEMDVEALLDA 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQSTLRIQGKGDKIR 198
             + T      +  R+ A+L +LY  GLR+SE   ++L   N++D    ++  GKG K R
Sbjct: 124 PDVETP-----LGLRDRAMLEVLYASGLRVSELVGMTLNQLNLLD--GVVKTMGKGSKER 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF--QR---YIRQLRRY 253
           +VPL    +  +L Y         L    PL   + G+P +  VF  QR     RQ+  +
Sbjct: 177 LVPLGEIAQDWLLRY---------LKEARPLL--LAGQPCD-AVFVTQRKAGMTRQMAWH 224

Query: 254 L--------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           L        GL    + H LRH+FATHL+++G DLR +Q +LGH  +STTQIYT+V  + 
Sbjct: 225 LITQYAGRQGLA-KVSPHVLRHAFATHLVNHGADLRVVQLLLGHADISTTQIYTHVARER 283

Query: 306 GGDWMMEIYDQTHP 319
               + +++ + HP
Sbjct: 284 ----LKQLHARHHP 293


>gi|255011626|ref|ZP_05283752.1| putative site-specific recombinase [Bacteroides fragilis 3_1_12]
 gi|313149461|ref|ZP_07811654.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313138228|gb|EFR55588.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 293

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 145/301 (48%), Gaps = 13/301 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L  L  ER  S+ T+ +Y  D  Q    L  + +E+I      ++    IR +I   
Sbjct: 4   DSFLDYLRYERNYSEKTVLAYGEDISQ----LQEFVQEEIGEFNPLEVKPELIREWIVSL 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S+ R LS ++SF KYL ++   +   +  +   K    LP  L E +   L+
Sbjct: 60  MDRGYTSTSVNRKLSSLRSFYKYLLRQGEVSVDPLRKITGPKNKKPLPSFLKESEMNKLL 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D+    T     +   R+  I+ + Y  G+R+SE + L  +++    S L++ GK +K R
Sbjct: 120 DD----TDFGEGFKGCRDRLIIEVFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQR 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++P    +++A+ EY D+    +++       R    +     V+    R L + + L  
Sbjct: 176 LIPFGDELKEAMFEYVDVRNKVISVKSDAFFVRENGERLYKNLVYNLVKRNLSKVVTLK- 234

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FAT +L+N  +L +++ +LGH  L+TT+IYT+   +     + ++Y Q H
Sbjct: 235 KRSPHVLRHTFATTMLNNDAELGAVKELLGHSSLATTEIYTHTTFEE----LKKVYKQAH 290

Query: 319 P 319
           P
Sbjct: 291 P 291


>gi|291522352|emb|CBK80645.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 159

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 91/162 (56%), Gaps = 6/162 (3%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC- 217
           +L L+Y  G+R+SE +SLT  +I      +R   +G + RI+P+    R ++ +Y     
Sbjct: 1   MLELMYATGIRVSELVSLTIDDINVQAGYIRCSERGRE-RIIPIGSVARISLRQYLKQAR 59

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
           P  ++ +    LF    G+P++   F + ++Q     G+    T HTLRHSFA HLL NG
Sbjct: 60  PAMISDDSSAILFPNYSGQPMSRQGFWKILKQYAAKAGIESDITPHTLRHSFAAHLLENG 119

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            DLRS+Q +LGH  +STTQIY  +N+      + +IY  THP
Sbjct: 120 ADLRSVQEMLGHSDISTTQIYLKMNTGR----IRDIYSHTHP 157


>gi|225853465|ref|YP_002733698.1| site-specific tyrosine recombinase XerD [Brucella melitensis ATCC
           23457]
 gi|256045632|ref|ZP_05448510.1| site-specific tyrosine recombinase XerD [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256112356|ref|ZP_05453277.1| site-specific tyrosine recombinase XerD [Brucella melitensis bv. 3
           str. Ether]
 gi|225641830|gb|ACO01744.1| tyrosine recombinase XerD [Brucella melitensis ATCC 23457]
 gi|326410027|gb|ADZ67092.1| site-specific tyrosine recombinase XerD [Brucella melitensis M28]
 gi|326539743|gb|ADZ87958.1| tyrosine recombinase XerD [Brucella melitensis M5-90]
          Length = 307

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 134/302 (44%), Gaps = 38/302 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N+L+ +  ERG ++ TL+SY  D       LA         +T        IR  +   
Sbjct: 8   ENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAET------GHIRMTLDTM 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R LS ++ F ++L       +     +   KK   LP+ ++ +    L+
Sbjct: 62  AAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGKLL 121

Query: 139 DNVLLHTSHET---KWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           D   L  +      + I A R  A+L  LY  GLR+SE + L       D   L ++GKG
Sbjct: 122 DRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKG 181

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------- 243
            K R+VPL    R A+ ++       L L   LP      G   NP +F           
Sbjct: 182 SKDRMVPLSRKARDALQKF-------LTLRDSLP------GSDDNPWLFPAFSESGHLAR 228

Query: 244 QRYIRQLRRYLGLPLS----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           Q + R+L+             + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT
Sbjct: 229 QVFARELKGLAARAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYT 288

Query: 300 NV 301
           +V
Sbjct: 289 HV 290


>gi|50123101|ref|YP_052268.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|49613627|emb|CAG77078.1| integrase/recombinase [Pectobacterium atrosepticum SCRI1043]
          Length = 311

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 148/302 (49%), Gaps = 25/302 (8%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L++ER LS LTL SY   +RQ    +   +   I     R L  + +R+ +S+ +  
Sbjct: 24  LRYLKVERQLSPLTLTSY---SRQLSAVITILSAAGIA--DWRALDASSVRSVVSRSKRD 78

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +   SL   LS ++SFL ++  R + T +    +   +    LP+ ++  +      N 
Sbjct: 79  GLHSGSLALRLSALRSFLDWMVSRGVLTANPAKGVSTPRAGRPLPKNMDVDEV-----NR 133

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           LL    +   +  R+  +L ++YG GLR++E + +  Q+I      + + GKG K R +P
Sbjct: 134 LLEIDLDDP-LAVRDRTMLEVMYGAGLRLAELVGMDYQHIDLASGEIWVMGKGSKERKLP 192

Query: 202 LLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +  +    +  +  L     P D  +      F   +G+ ++    Q+   +     G+ 
Sbjct: 193 IGKTAVTWLERWLALRELFGPQDDAV------FISNQGRRISMRNVQKRFAEWGVKQGIN 246

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRHSFATH+L + GDLR++Q +LGH  L+TTQIYT+++ ++    +  +YD  
Sbjct: 247 SHVHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----LASVYDAA 302

Query: 318 HP 319
           HP
Sbjct: 303 HP 304


>gi|14591576|ref|NP_143658.1| integrase/recombinase [Pyrococcus horikoshii OT3]
 gi|73920474|sp|O59490|XERCL_PYRHO RecName: Full=Probable tyrosine recombinase xerC-like
 gi|3258262|dbj|BAA30945.1| 285aa long hypothetical integrase/recombinase [Pyrococcus
           horikoshii OT3]
          Length = 285

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 99/309 (32%), Positives = 155/309 (50%), Gaps = 57/309 (18%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           EIV+ ++L+E   +L   E+E G SK T+       R +  +L+ + EE  +      L 
Sbjct: 6   EIVNSDILEEFATYL---ELE-GKSKNTI-------RMYTYYLSKFFEEGYSPTARDALK 54

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
                 F++K R      RSL   +  +KS+ K+        +S    ++N K   SLP+
Sbjct: 55  ------FLAKLRKSGYSIRSLNLVIQALKSYFKFE-----GLDSEAEKLKNPKIPKSLPK 103

Query: 128 ALNE---KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           +L E   K+ +++ DN+             R+  IL LLYG GLR+SE  +L  +++  +
Sbjct: 104 SLTEDEVKKIVSVADNL-------------RDKLILLLLYGAGLRVSELCNLKIEDVNFE 150

Query: 185 QSTLRIQG-KGDKIRIVP----LLPSVRKAILEYYDLCPFDLNLNIQLPLF---RGIRGK 236
           +S L ++G KG K R++P    LL  + + +    D  P+         LF   R  R  
Sbjct: 151 KSFLIVRGGKGGKDRVIPISKTLLFEIERYLKTRKDNSPY---------LFVEKRRNRKD 201

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L+P      +++  + +GL  + T H LRHSFATH+L  G D+R IQ +LGH  LSTTQ
Sbjct: 202 KLSPKTVWMLVKKYGKKVGL--NVTPHQLRHSFATHMLERGVDIRIIQELLGHANLSTTQ 259

Query: 297 IYTNVNSKN 305
           IYT V +K+
Sbjct: 260 IYTKVTTKH 268


>gi|225012642|ref|ZP_03703077.1| integrase family protein [Flavobacteria bacterium MS024-2A]
 gi|225003175|gb|EEG41150.1| integrase family protein [Flavobacteria bacterium MS024-2A]
          Length = 298

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 150/310 (48%), Gaps = 18/310 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +++  + +E+  S  T ++Y+ +  QF  FL      + +  ++ ++SY+EIR++I    
Sbjct: 5   SFIDYILLEKKSSLHTQKAYQSNLEQFEAFLL----SEGSKASLEEVSYSEIRSWIVSLI 60

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +    R++ R +S ++S+ K+L +      S +   + LK +  +    ++ +   L+D
Sbjct: 61  QKGNSTRTVNRKISVLRSYYKFLMRTGSIDSSPLKEHKALKMATQVQLPFSQDEVAQLLD 120

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           +     S    ++      IL L Y  G+R SE + L   N+   +  +++ GK +K R+
Sbjct: 121 SGHFPDS----YLGVLQKTILSLFYYTGIRRSELIELKLLNVDLSKGLIKVLGKRNKERL 176

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPL 258
           +PLLP ++  +    D C    N++ +  LF   + G  L        +      +    
Sbjct: 177 IPLLPEIKVELQLMLD-CQVRNNIDREEGLFFTTQQGFKLTDSFVYATVNDYFSKVSTKT 235

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRHSFATHLL  G DL SI+ +LGH  ++ TQ YT+ +       + E+Y   H
Sbjct: 236 KRSPHVLRHSFATHLLDQGADLNSIKDLLGHSSIAATQHYTHSSMAK----IKEVYKSAH 291

Query: 319 PSITQKDKKN 328
           P    ++KKN
Sbjct: 292 P----REKKN 297


>gi|17986324|ref|NP_538958.1| site-specific tyrosine recombinase XerD [Brucella melitensis bv. 1
           str. 16M]
 gi|260562936|ref|ZP_05833422.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. 16M]
 gi|265992055|ref|ZP_06104612.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. Rev.1]
 gi|265993791|ref|ZP_06106348.1| tyrosine recombinase xerD [Brucella melitensis bv. 3 str. Ether]
 gi|265999264|ref|ZP_06111622.1| tyrosine recombinase xerD [Brucella melitensis bv. 2 str. 63/9]
 gi|34222943|sp|Q8YJP2|XERD_BRUME RecName: Full=Tyrosine recombinase xerD
 gi|17981909|gb|AAL51222.1| integrase/recombinase xerd [Brucella melitensis bv. 1 str. 16M]
 gi|260152952|gb|EEW88044.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. 16M]
 gi|262764772|gb|EEZ10693.1| tyrosine recombinase xerD [Brucella melitensis bv. 3 str. Ether]
 gi|263003121|gb|EEZ15414.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. Rev.1]
 gi|263092931|gb|EEZ17106.1| tyrosine recombinase xerD [Brucella melitensis bv. 2 str. 63/9]
          Length = 309

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 134/302 (44%), Gaps = 38/302 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N+L+ +  ERG ++ TL+SY  D       LA         +T        IR  +   
Sbjct: 10  ENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAET------GHIRMTLDTM 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R LS ++ F ++L       +     +   KK   LP+ ++ +    L+
Sbjct: 64  AAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGKLL 123

Query: 139 DNVLLHTSHET---KWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           D   L  +      + I A R  A+L  LY  GLR+SE + L       D   L ++GKG
Sbjct: 124 DRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKG 183

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------- 243
            K R+VPL    R A+ ++       L L   LP      G   NP +F           
Sbjct: 184 SKDRMVPLSRKARDALQKF-------LTLRDSLP------GSDDNPWLFPAFSESGHLAR 230

Query: 244 QRYIRQLRRYLGLPLS----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           Q + R+L+             + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT
Sbjct: 231 QVFARELKGLAARAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYT 290

Query: 300 NV 301
           +V
Sbjct: 291 HV 292


>gi|23502879|ref|NP_699006.1| site-specific tyrosine recombinase XerD [Brucella suis 1330]
 gi|161619947|ref|YP_001593834.1| site-specific tyrosine recombinase XerD [Brucella canis ATCC 23365]
 gi|254705035|ref|ZP_05166863.1| site-specific tyrosine recombinase XerD [Brucella suis bv. 3 str.
           686]
 gi|23348908|gb|AAN30921.1| integrase/recombinase XerD [Brucella suis 1330]
 gi|161336758|gb|ABX63063.1| tyrosine recombinase XerD [Brucella canis ATCC 23365]
          Length = 307

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 134/302 (44%), Gaps = 38/302 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N+L+ +  ERG ++ TL+SY  D       LA         +T        IR  +   
Sbjct: 8   ENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAET------GHIRMTLDTM 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R LS ++ F ++L       +     +   KK   LP+ ++ +    L+
Sbjct: 62  AAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGRLL 121

Query: 139 DNVLLHTSHET---KWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           D   L  +      + I A R  A+L  LY  GLR+SE + L       D   L ++GKG
Sbjct: 122 DRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKG 181

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------- 243
            K R+VPL    R A+ ++       L L   LP      G   NP +F           
Sbjct: 182 SKDRMVPLSRKARDALQKF-------LTLRDSLP------GSDDNPWLFPAFSESGHLAR 228

Query: 244 QRYIRQLRRYLGLPLS----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           Q + R+L+             + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT
Sbjct: 229 QVFARELKGLAARAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYT 288

Query: 300 NV 301
           +V
Sbjct: 289 HV 290


>gi|260567497|ref|ZP_05837967.1| tyrosine recombinase xerD [Brucella suis bv. 4 str. 40]
 gi|261755736|ref|ZP_05999445.1| tyrosine recombinase xerD [Brucella suis bv. 3 str. 686]
 gi|34222805|sp|Q7ZAN6|XERD_BRUSU RecName: Full=Tyrosine recombinase xerD
 gi|260157015|gb|EEW92095.1| tyrosine recombinase xerD [Brucella suis bv. 4 str. 40]
 gi|261745489|gb|EEY33415.1| tyrosine recombinase xerD [Brucella suis bv. 3 str. 686]
          Length = 309

 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 134/302 (44%), Gaps = 38/302 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N+L+ +  ERG ++ TL+SY  D       LA         +T        IR  +   
Sbjct: 10  ENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAET------GHIRMTLDTM 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R LS ++ F ++L       +     +   KK   LP+ ++ +    L+
Sbjct: 64  AAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGRLL 123

Query: 139 DNVLLHTSHET---KWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           D   L  +      + I A R  A+L  LY  GLR+SE + L       D   L ++GKG
Sbjct: 124 DRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKG 183

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------- 243
            K R+VPL    R A+ ++       L L   LP      G   NP +F           
Sbjct: 184 SKDRMVPLSRKARDALQKF-------LTLRDSLP------GSDDNPWLFPAFSESGHLAR 230

Query: 244 QRYIRQLRRYLGLPLS----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           Q + R+L+             + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT
Sbjct: 231 QVFARELKGLAARAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYT 290

Query: 300 NV 301
           +V
Sbjct: 291 HV 292


>gi|258622840|ref|ZP_05717857.1| tyrosine recombinase XerC [Vibrio mimicus VM573]
 gi|258584901|gb|EEW09633.1| tyrosine recombinase XerC [Vibrio mimicus VM573]
          Length = 266

 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 135/264 (51%), Gaps = 15/264 (5%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           QL    +R  +   + Q +   S+   LS ++SFL +L  R     +    +   +K   
Sbjct: 15  QLDAAWVRQLVVLGKRQGMKASSISTRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRP 74

Query: 125 LPRALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           LP+ L+       VD +  LL  + +   +  R+ AI+ L+YG GLR++E +S+  +++ 
Sbjct: 75  LPKNLD-------VDEMAQLLEVTDDDP-LSIRDRAIMELMYGSGLRLAELVSIDVKDVN 126

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
                +R+ GKG+K R V      ++ +  +  L     N + +  LF    G  ++   
Sbjct: 127 LRDGEIRVIGKGNKERKVWFAGQAQEWVGNWLKLRSQLANSD-ETALFVSKLGTRISHRS 185

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            Q+ + +  +   +    + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+++
Sbjct: 186 VQKRMAEWGQKQAVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLD 245

Query: 303 SKNGGDWMMEIYDQTHPSITQKDK 326
            ++    + ++YDQ HP   +K+K
Sbjct: 246 FQH----LAQVYDQAHPRARKKNK 265


>gi|269213994|ref|ZP_05983350.2| tyrosine recombinase XerD [Neisseria cinerea ATCC 14685]
 gi|269144753|gb|EEZ71171.1| tyrosine recombinase XerD [Neisseria cinerea ATCC 14685]
          Length = 308

 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 142/281 (50%), Gaps = 16/281 (5%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L ++R LS+ TL+SY  D  +    L+      +  QT+R    +++ A +     +
Sbjct: 27  LETLWLDRRLSRNTLESYRRDLEKIARRLS------LCGQTLRDADESDLAAAVYVAGEE 80

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
           +    S  R+LS  K    ++++  + T++    ++  K   ++P  + E+Q   L+   
Sbjct: 81  R---SSQARALSACKRLYIWMEREGMRTDNPTRLLKPPKIDKNIPTLITEQQISRLLSAP 137

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
              T H       R+ A+L L+Y  GLR+SEA+ L+  N+  D+  +   GKG+K RIVP
Sbjct: 138 DTDTPH-----GLRDKALLELMYATGLRVSEAVRLSFGNLDLDRGCITTLGKGNKQRIVP 192

Query: 202 LLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +       +  YY +  P  L       LF   +   ++  +    +++     G+    
Sbjct: 193 MGRESVYWVERYYKEARPLLLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIE-HI 251

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + H+LRH+FATHL+ +G DLR +Q +LGH  L+TTQIYT+V
Sbjct: 252 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHV 292


>gi|15827711|ref|NP_301974.1| site-specific tyrosine recombinase XerD [Mycobacterium leprae TN]
 gi|221230188|ref|YP_002503604.1| site-specific tyrosine recombinase XerD [Mycobacterium leprae
           Br4923]
 gi|34222781|sp|Q49890|XERD_MYCLE RecName: Full=Tyrosine recombinase xerD
 gi|2065218|emb|CAB08282.1| XerD [Mycobacterium leprae]
 gi|13093262|emb|CAC31746.1| integrase/recombinase [Mycobacterium leprae]
 gi|219933295|emb|CAR71460.1| integrase/recombinase [Mycobacterium leprae Br4923]
          Length = 316

 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 146/316 (46%), Gaps = 28/316 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L  L IER ++  TL SY  D    LI  + +  ++  I+ + ++   ++  F+   
Sbjct: 11  QGYLDYLIIERSIAANTLSSYRRD----LIRYSKHLSDR-GIEDLAKVGEHDVSEFLVAL 65

Query: 79  RTQKIGD----------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           R    GD           S  R+L  ++   ++     +        +R       LP++
Sbjct: 66  RR---GDPDSGVAALSAVSAARALIAVRGLHRFAVAEGLVDLDVARAVRPPTPGRRLPKS 122

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L   + L L+++V   +  +   +  RN A+L LLY  G RISEA+ L   ++     T+
Sbjct: 123 LTVDEVLALLESVGGESRADGPLV-LRNRALLELLYSTGSRISEAVGLDVDDVDTQARTV 181

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
            +QGKG K R+VP+     +A+  Y      DL      +     +F   RG  L+    
Sbjct: 182 LLQGKGGKQRLVPVGRPAVQALDAYLVRGRSDLARRGPGMLATPAIFLNARGGRLSRQSA 241

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            + ++    + G+    + H LRHSFATHLL  G D+R +Q ++GH  ++TTQIYT V  
Sbjct: 242 WQVLQDAAEHAGITSGVSPHMLRHSFATHLLEGGADIRVVQELMGHASVTTTQIYTLVTV 301

Query: 304 KNGGDWMMEIYDQTHP 319
           +     + E++   HP
Sbjct: 302 QA----LREVWAGAHP 313


>gi|325299603|ref|YP_004259520.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170]
 gi|324319156|gb|ADY37047.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170]
          Length = 292

 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 147/308 (47%), Gaps = 26/308 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++++L+ L+ E+  S+ T+ SY  D   F  +     +E +   T+       IR ++  
Sbjct: 3   KESFLKYLQFEKNYSEKTVVSYGIDLSGFEAYFK-AVDETLDFATV---DADVIRGWVVS 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S+ R LS ++SF +YL + K+ +   +  +   KK   LP  + E     L
Sbjct: 59  LMDEGYAASSVNRKLSSLRSFYRYLLREKVVSVDPVRKVTGPKKKKPLPVFVKEADMDRL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D         T +   RN AI+ + Y  G+R+SE + L   N+     T+++ GK +K 
Sbjct: 119 LD-----AECGTDFESVRNKAIVAVFYETGIRLSELIGLKDANVDFSAGTIKVTGKRNKQ 173

Query: 198 RIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ-LR 251
           R++P    +   IL+ Y     + C  +         F    GK + PG+    +RQ L 
Sbjct: 174 RVIPFGEELEN-ILQVYLSARNEYCHTECE-----AFFVRKEGKAMYPGMVYLLVRQNLS 227

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R + L    + H LRHSFAT +L+N   L +++ +LGH  L+TT+IYT+   +     + 
Sbjct: 228 RVVALK-KRSPHVLRHSFATAMLNNQAGLEAVKELLGHESLTTTEIYTHTTFEE----LK 282

Query: 312 EIYDQTHP 319
           ++Y Q HP
Sbjct: 283 KVYQQAHP 290


>gi|170725258|ref|YP_001759284.1| tyrosine recombinase XerD [Shewanella woodyi ATCC 51908]
 gi|169810605|gb|ACA85189.1| tyrosine recombinase XerD [Shewanella woodyi ATCC 51908]
          Length = 308

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 93/300 (31%), Positives = 146/300 (48%), Gaps = 16/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L   RGLS  TL +Y  D   F  +L    +  I +    Q     IR ++  R  
Sbjct: 22  FLDDLWSSRGLSSNTLSAYRTDLCHFEHYL---IKSGIALCDATQ---GTIRDYLDVRFE 75

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     S  R +S ++ F  +L  +          +++ + +  LP +L+E      VD+
Sbjct: 76  KGFARTSSARLISSLRRFYGFLVIQNRIEVDPTAQIKSPQLARKLPDSLSEAD----VDS 131

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +L   + +   I+ R+ A+L LLY  GLR++E +SLT + I   Q  +R+ GKG K R+V
Sbjct: 132 LLSEPNLDDP-IECRDKAMLELLYATGLRVTELVSLTMEQISLRQGVVRVVGKGGKERLV 190

Query: 201 PLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           PL       +  Y      +L    +   LF   RG  +    F   I+      G+   
Sbjct: 191 PLGEMAISEVESYLVAARGELLKQKMSDVLFPSKRGSMMTRQTFWHRIKHYALRAGISTD 250

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + +++ + HP
Sbjct: 251 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKAR----LSQLHSEHHP 306


>gi|209693751|ref|YP_002261679.1| site-specific tyrosine recombinase XerC [Aliivibrio salmonicida
           LFI1238]
 gi|208007702|emb|CAQ77813.1| tyrosine recombinase XerC [Aliivibrio salmonicida LFI1238]
          Length = 303

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 151/306 (49%), Gaps = 34/306 (11%)

Query: 28  ERGLSKLTLQSYE---CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           E+GLS  T ++Y+       + LI L   + + +    +RQ++   +R+ +         
Sbjct: 23  EKGLSIYTQRNYKRQLTTIAEQLIELGVDSWQDVDAGWVRQITSKGMRSGLKASSLST-- 80

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
                  LS ++SF  +L  R +   +    +   +KS  LP+ ++  +   L++     
Sbjct: 81  ------RLSSLRSFFDFLVLRNVLQANPAKGVSAPRKSRPLPKNIDVDEMGQLLE----- 129

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
             +E   +  R+ A++ L+YG GLR++E + +  ++I   Q  LR+ GKGDK R VP   
Sbjct: 130 -VNEDDPLSIRDRAMMELMYGAGLRLAELVGIDVRDIQLRQGELRVIGKGDKERKVPFSG 188

Query: 205 SVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
             ++ +  +       L +  QL  P  +G+    L   +  R +++     G+     +
Sbjct: 189 KAKEWLGHW-------LQVRNQLANPEEKGLFVSKLGVRISHRNVQKRMAEWGMKQGVNS 241

Query: 263 H----TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           H     LRHSFATH+L + G+LR++Q +LGH  +STTQIYT+++ ++    + + YDQ H
Sbjct: 242 HISPHKLRHSFATHMLESSGNLRAVQELLGHENISTTQIYTHLDFQH----LAQAYDQAH 297

Query: 319 PSITQK 324
           P   +K
Sbjct: 298 PRAKKK 303


>gi|172057600|ref|YP_001814060.1| integrase family protein [Exiguobacterium sibiricum 255-15]
 gi|171990121|gb|ACB61043.1| integrase family protein [Exiguobacterium sibiricum 255-15]
          Length = 347

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 152/307 (49%), Gaps = 26/307 (8%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI-----RAFISKRR-TQK 82
           +  SK T++ Y  D   F  F+A  + E I  + I Q ++ EI      A+      T++
Sbjct: 44  KNFSKATMRRYVYDFDSFFQFVAEASGESIQARDITQEAFLEIDGSGIAAYAEYLALTKQ 103

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV---- 138
                + R LS ++S  ++L    + +E+ +  +   K++   P  L +++   L+    
Sbjct: 104 NAPSVINRKLSALQSLFRHLIDIGVLSENPVAKINRPKQAKRDPVYLTKREWDELMQLLP 163

Query: 139 DNVLLHTSHETKW--IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
            NV ++    T +     R+  +  LL   G+R+SE   LT   +   + T+R+ GKG+K
Sbjct: 164 SNVEMNAREATHYERDRVRDITLFQLLGYSGMRLSEMTQLTWNAVDFHEGTIRVIGKGNK 223

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ----RYIRQLRR 252
            R++PL   VR A+ ++     + L +    P+F+  +GK L+P   Q    R++ +LR 
Sbjct: 224 ERVIPLAKPVRVALRKF--AAHYSLTMRGPEPIFQK-QGKALSPRAVQHILKRHVDRLRP 280

Query: 253 YLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            L  P       T H LRH+FAT L + G D+ +IQ +LGH  ++TTQ+Y ++  +    
Sbjct: 281 VL--PFLERKQITPHKLRHTFATRLATGGVDVLTIQQLLGHESVATTQVYAHIGDRE-KK 337

Query: 309 WMMEIYD 315
             +E++D
Sbjct: 338 RAIELFD 344


>gi|332977413|gb|EGK14190.1| site-specific tyrosine recombinase XerC [Psychrobacter sp.
           1501(2011)]
          Length = 341

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 149/329 (45%), Gaps = 45/329 (13%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT---- 69
           LL   + WL  L + R +S  T+++Y     Q   FL              +LS+T    
Sbjct: 36  LLLPVEQWLAELSV-RQMSSHTIEAYYAGLFQLASFL-----------EAGKLSWTRCDK 83

Query: 70  -EIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
            ++  +I++R     +   S+++ LS I+ F  +L  +     +     +  +    LP 
Sbjct: 84  RQLAKYIAQRLDVDALAISSVQQELSAIRHFYSWLIDQGQARINPTTGYQLKRAPRPLPS 143

Query: 128 ALNEKQALTLVDNVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-- 184
             +      L++  +  T  + + WI  R+ A+  LLY  GLR+ E + L   ++  D  
Sbjct: 144 IADGDLLTQLLEQPMPDTPEQARLWI--RDKAMFELLYSSGLRVGELVGLNVSDLRIDAR 201

Query: 185 --QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF--------DLNLNIQLPLFRGIR 234
             +  +R+ GKG+K R+VP+     KAI  Y    P         D  L I   L     
Sbjct: 202 GERGEVRVTGKGNKTRLVPVGRQALKAINTY---LPHRYLWEEQGDTALFISEKL----- 253

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G  L     Q+ ++      G+  +   H LRH FA+H+LS  GDLR++Q +LGH  +ST
Sbjct: 254 GTRLTTRAVQQRLKVAANRAGIAQNMYPHLLRHCFASHMLSGSGDLRAVQEMLGHSDIST 313

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
           TQIYT+V+       + ++YD+ HP  T 
Sbjct: 314 TQIYTHVDFAK----LTQVYDKAHPRATH 338


>gi|303241172|ref|ZP_07327680.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302591299|gb|EFL61039.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 330

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 161/316 (50%), Gaps = 33/316 (10%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF---YTEEK----------ITI 60
           +LK+  N+LQ +   +G S  T+Q Y  D R F  FL       ++K          + I
Sbjct: 12  ILKDFLNYLQTI---KGKSINTVQVYFYDLRVFFRFLKMDRNLVDKKLDFDKIDICDVDI 68

Query: 61  QTIRQLSYTEIRAF---ISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNM 116
           + I+ ++ +++ +F   +S  R      R+  R ++ +KSF  YL  K K+   +    +
Sbjct: 69  ELIKTVTLSDLYSFMSYVSNNRDNTSYARA--RKVASLKSFFNYLFNKAKLLNVNPASEL 126

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
            + K    LPR LN +++  L+ +V   T  E      R+ A+L L   CG+R+SE + +
Sbjct: 127 ESPKILKRLPRYLNVEESKQLLSSVNTGTYSE------RDYAMLTLFLNCGMRLSELVGI 180

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
              NI +D  TL + GKGDK R +PL  +  +AI  Y  + P +  +  +  LF   R +
Sbjct: 181 NINNIKND--TLTVIGKGDKERSIPLNSACLEAIEAYMKVRPVN-GVKDKNALFISGRKQ 237

Query: 237 PLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLST 294
            ++    Q+ +++  +  GL P   + H LRH+ AT +   G  D+R++Q +LGH  ++T
Sbjct: 238 RISKESVQKIVKKYIKQAGLDPQRYSTHKLRHTAATLMYKYGKVDIRALQELLGHESIAT 297

Query: 295 TQIYTNVNSKNGGDWM 310
           T+IYT+++ +   D +
Sbjct: 298 TEIYTHLDKEQLKDAV 313


>gi|320534120|ref|ZP_08034661.1| putative site-specific tyrosine recombinase XerD [Actinomyces sp.
           oral taxon 171 str. F0337]
 gi|320133699|gb|EFW26106.1| putative site-specific tyrosine recombinase XerD [Actinomyces sp.
           oral taxon 171 str. F0337]
          Length = 222

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 110/221 (49%), Gaps = 17/221 (7%)

Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           T+E     +R  +    LP+AL   +   L++   +  S     +  R+ A+L +LY  G
Sbjct: 6   TSEDPSATVRPPQPGRRLPKALGIDEVRLLLEAAGVDDSP----VSLRDRALLEVLYATG 61

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQ 226
            RISEA+ L   ++  D   LR+ GKG K R+VP+     +A+  Y     P        
Sbjct: 62  ARISEAVGLVIDDLDTDSRLLRLFGKGRKERVVPMGTYAWEALDAYLVRGRPVLAEKGRG 121

Query: 227 LP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-------HTLRHSFATHLLSNGG 278
           +P +F    G+PL+       ++Q     GL    +A       HTLRHSFATHLL+ G 
Sbjct: 122 VPQVFLNTLGRPLSRQSAWAVLQQAAERAGLIGVDSADRRRISPHTLRHSFATHLLAGGA 181

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           D+R +Q +LGH  ++TTQIYT V      D + E+Y  +HP
Sbjct: 182 DVRVVQEMLGHASVTTTQIYTKVTV----DHLREVYATSHP 218


>gi|330997394|ref|ZP_08321245.1| putative tyrosine recombinase XerC [Paraprevotella xylaniphila YIT
           11841]
 gi|329570768|gb|EGG52484.1| putative tyrosine recombinase XerC [Paraprevotella xylaniphila YIT
           11841]
          Length = 293

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 144/304 (47%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L +ER  S  T++ Y  D   F    ++Y +   T+ +   +    +R ++   
Sbjct: 4   EAFLEYLTLERNYSLRTVEEYRDDLNAFE---SYYKKVDSTL-SWETMDGDVVRDWMVSM 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   ++ R LS +++F +YL +R       + N++  KK   LP  L E +   L+
Sbjct: 60  MEAGRTATTVNRRLSALRTFYRYLLRRDWIKVDPVRNIQGPKKKKPLPVFLKESEMNRLL 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D           ++  R+  I+   Y  G+R+SE  SL  Q++      +R+ GK +K R
Sbjct: 120 DGDFFGND----FLGKRDKLIVNTFYVTGIRLSELTSLNNQDVDMWGGVIRVTGKRNKQR 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVP    +   +  Y D     L L     +F   +G+ L     +  +R    YLG+  
Sbjct: 176 IVPFGDELEALLTAYLDEKS-SLGLEDGGAMFVDEKGERLTNVKVRNLVRH---YLGMVT 231

Query: 259 ST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + H LRH+FAT +L++  DL S++ +LGH  +STT+IYT+   +     + E+Y+
Sbjct: 232 TQKKRSPHVLRHTFATSMLNHHADLESLKELLGHESISTTEIYTHTTFEE----LKEMYN 287

Query: 316 QTHP 319
           Q HP
Sbjct: 288 QAHP 291


>gi|331697596|ref|YP_004333835.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190]
 gi|326952285|gb|AEA25982.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190]
          Length = 307

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 141/309 (45%), Gaps = 30/309 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++ +L +ERG S  TL++Y  D R+++  L      +  +  +  +   ++  F++  R+
Sbjct: 15  FMAHLAVERGSSPNTLRAYGNDLRRYVAHL-----RERGVDDLAAVQEADVSGFVAALRS 69

Query: 81  --QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +   S  R+L+ ++   ++  +  +  +     +     +  LPR L        V
Sbjct: 70  GPAPLAASSAARALAAVRGLHRFAARDGLVDDDVSRAVTPPATARRLPRTLT-------V 122

Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           D V  LL           R+ A+L LLY  G RISEA+ +   ++  +  T+ + GKG K
Sbjct: 123 DEVEQLLAGCIGDGPTGLRDRALLELLYSTGARISEAVGIDVDDLDAESRTVLLHGKGGK 182

Query: 197 IRIVPLLPSVRKAILEYYDLC-----PFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQL 250
            R+VP    V +  L   D       P   +     P L    RG  L+       +R  
Sbjct: 183 QRVVP----VGRPALAAVDAWLVRGRPALASRGRGSPALLLNARGARLSRQSAWHVLRGA 238

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+    + HTLRH FATHLLS G D+R +Q +LGH  ++TTQIYT+V      D +
Sbjct: 239 AEVAGVRAEVSPHTLRHCFATHLLSGGADVRVVQELLGHASVATTQIYTHVTV----DTL 294

Query: 311 MEIYDQTHP 319
            E+Y   HP
Sbjct: 295 REVYATAHP 303


>gi|269925988|ref|YP_003322611.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269789648|gb|ACZ41789.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 316

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 155/316 (49%), Gaps = 37/316 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q++L    +E GLS  ++++Y+      + +L    + K  +  + + S    + ++   
Sbjct: 16  QDFLDYCLVEEGLSPASVRTYQQVLYALVDWLELRLQSKAHVSNLDKQSVKAWQRYLVVE 75

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA---LNEKQAL 135
           +  ++ D +  + +S ++SF+ YL    +T+    L   ++K    LP++   ++  +AL
Sbjct: 76  K--QLDDDTYVKYISALRSFVNYLHDEDLTS----LTRDDIK----LPKSHMDVSSIKAL 125

Query: 136 TLVDNV---LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI------MDDQS 186
           + VD+V   L+     T W   R+ A+L LLY  G+RI+E  SL    +       D+  
Sbjct: 126 S-VDDVRALLMAPDPSTPW-GKRDRALLALLYCTGMRIAELCSLNRDQLPLEHLCEDEIL 183

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP----LNPGV 242
            + I GKG K R+V  + +V + +L+ Y      L  +    LF   +G      L P  
Sbjct: 184 EVSIIGKGRKPRVV-FVDAVAQRLLKEY----LQLRTDENPALFVSFKGPTAEDRLTPRA 238

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            Q  I++  +  GL    T HT+RH+FA H L  G D R +Q+ LGH  L+TTQ YT V 
Sbjct: 239 IQMSIKKYAKKAGLKTIPTPHTMRHTFAVHKLQGGADTRIVQAFLGHSSLATTQRYTRVT 298

Query: 303 SKNGGDWMMEIYDQTH 318
            +    ++ E Y++TH
Sbjct: 299 DR----YLRESYERTH 310


>gi|126737600|ref|ZP_01753330.1| tyrosine recombinase XerD [Roseobacter sp. SK209-2-6]
 gi|126720993|gb|EBA17697.1| tyrosine recombinase XerD [Roseobacter sp. SK209-2-6]
          Length = 328

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 118/242 (48%), Gaps = 12/242 (4%)

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            +I A++     + +   +  R LS +K   ++  +    +++  + +    +   LP+ 
Sbjct: 56  ADIEAYLIACDAEGLSRATRARRLSALKQIYRFAFEEGWRSDNPAIQISGPGRDKKLPKT 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L   +   L+D      +  +     RN  ++ LLY  G+R+SE +SL   +   D   L
Sbjct: 116 LEVIEVDRLLDAA--RQTGRSPEDRLRNCCLMELLYATGMRVSELVSLPVSSARGDPQML 173

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP------LF--RGIRGKPLNP 240
            + GKG K R+VPL P  R A+  +  +       N          LF  RG  G  L  
Sbjct: 174 LVLGKGGKERLVPLSPPARDALAAWLSVRDKADEANRSKGHASSRFLFPSRGKAGH-LTR 232

Query: 241 GVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
             F   I+ L    G+ P   T HTLRH+FATHLL+NG DLR+IQ++LGH  ++TT+IYT
Sbjct: 233 HFFYLLIKDLAVTGGVDPEKVTPHTLRHAFATHLLANGADLRAIQTLLGHADIATTEIYT 292

Query: 300 NV 301
           +V
Sbjct: 293 HV 294


>gi|304321470|ref|YP_003855113.1| putative integrase/recombinase DNA recombination protein
           [Parvularcula bermudensis HTCC2503]
 gi|303300372|gb|ADM09971.1| putative integrase/recombinase DNA recombination protein
           [Parvularcula bermudensis HTCC2503]
          Length = 323

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 138/300 (46%), Gaps = 13/300 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  + +ERG S  TL++Y  D  +  +FL F     +   T   LS     A+I     
Sbjct: 15  FLDMMAVERGASPRTLRNYGRDLERVSVFL-FQRGTSLLRATAADLS-----AYIDHLHG 68

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     +    LS ++ F  +     +  ++    +   K    LP+ L+  +A +L+D 
Sbjct: 69  QGRSAATAALCLSALRQFYLFAYTEGMREDNPAELVDRPKARRPLPKILSIDEAASLLD- 127

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +    +   K    R  A+L +LY  GLR+SE  SL    +   +  + + GKG K R+V
Sbjct: 128 LARDEAACMKPGPLRLHALLEVLYATGLRVSELCSLPRGAVRAGEPWMTVLGKGQKERLV 187

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLS 259
           PL      A+  Y  +       +  L   RG  G      V Q  +++L    G+ P  
Sbjct: 188 PLTDGAVMAVSHYVAVQTDAERASAFLFPSRGKTGHITTARVAQ-LLKELSARAGIDPTR 246

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + H LRH+FA+HLL  G DLR +Q +LGH  +STTQIYT++ S +    + +  +  HP
Sbjct: 247 VSPHVLRHAFASHLLEGGADLRIVQQLLGHADISTTQIYTHIGSGS----LAKTLEHRHP 302


>gi|254452119|ref|ZP_05065556.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198266525|gb|EDY90795.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 317

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 114/218 (52%), Gaps = 18/218 (8%)

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           ++++G+K  L+   +R       +  + +LK+   +P  L++K+    +  +L       
Sbjct: 91  QTMTGVKFLLRVTLRR----HDLVAEIFHLKEPVKVPLVLSKKE----IKRILAMAPS-- 140

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRK 208
             + AR   +L L YGCG+R  E + L   +I  DQ  +RI Q KG K RIV L   +  
Sbjct: 141 --LKAR--VMLSLAYGCGMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDILS 196

Query: 209 AILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            + +++   P   + ++  P   LF G RGK L+     R  ++  R  G+    T HTL
Sbjct: 197 LLRDWWQERPTGQDKDVPAPERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTL 256

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           RHSFATHLL  G D+R IQ++LGH +L+TT  Y +V +
Sbjct: 257 RHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVAT 294


>gi|256843164|ref|ZP_05548652.1| integrase [Lactobacillus crispatus 125-2-CHN]
 gi|256614584|gb|EEU19785.1| integrase [Lactobacillus crispatus 125-2-CHN]
          Length = 270

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 116/233 (49%), Gaps = 6/233 (2%)

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +I+ ++     +K+   S  R +S + SF ++L +RK+        +   +    LP+  
Sbjct: 24  DIQVYLQHLAERKLARSSQLRKMSSLHSFYRFLTRRKLVAIDPTQGITLRRGEKKLPQFF 83

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            + +   + D++        K +  RN A+  L Y  G+R+SE  +LT   +  D  T+ 
Sbjct: 84  YQPELKQVFDSL-----KGNKPLTMRNLAMFELFYATGMRVSEVSNLTLNQLDLDLQTIL 138

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           + GKG+K R V      +K+++ Y +   P  L  + +  +F   +G  +     +  ++
Sbjct: 139 VHGKGNKDRYVAFDDKTKKSLIAYLENARPLLLKNDDEQHVFLNNQGTGITSRGIETVMQ 198

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +     G+      H LRHSFAT +L+NG DLRS+Q +LGH  LS TQIYT+V
Sbjct: 199 KTFNQAGISGKVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHV 251


>gi|254452582|ref|ZP_05066019.1| phage integrase [Octadecabacter antarcticus 238]
 gi|254454231|ref|ZP_05067668.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198266988|gb|EDY91258.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198268637|gb|EDY92907.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 320

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 114/218 (52%), Gaps = 18/218 (8%)

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           ++++G+K  L+   +R       +  + +LK+   +P  L++K+    +  +L       
Sbjct: 91  QTMTGVKFLLRVTLRR----HDLVAEIFHLKEPVKVPLVLSKKE----IKRILAMAPS-- 140

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRK 208
             + AR   +L L YGCG+R  E + L   +I  DQ  +RI Q KG K RIV L   +  
Sbjct: 141 --LKAR--VMLSLAYGCGMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDILS 196

Query: 209 AILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            + +++   P   + ++  P   LF G RGK L+     R  ++  R  G+    T HTL
Sbjct: 197 LLRDWWQERPTGQDKDVPAPERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTL 256

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           RHSFATHLL  G D+R IQ++LGH +L+TT  Y +V +
Sbjct: 257 RHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVAT 294


>gi|254450019|ref|ZP_05063456.1| phage integrase [Octadecabacter antarcticus 238]
 gi|254450690|ref|ZP_05064127.1| phage integrase [Octadecabacter antarcticus 238]
 gi|254452057|ref|ZP_05065494.1| phage integrase [Octadecabacter antarcticus 238]
 gi|254452879|ref|ZP_05066316.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264425|gb|EDY88695.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198265096|gb|EDY89366.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198266463|gb|EDY90733.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198267285|gb|EDY91555.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 317

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 114/218 (52%), Gaps = 18/218 (8%)

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           ++++G+K  L+   +R       +  + +LK+   +P  L++K+    +  +L       
Sbjct: 91  QTMTGVKFLLRVTLRR----HDLVAEIFHLKEPVKVPLVLSKKE----IKRILAMAPS-- 140

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRK 208
             + AR   +L L YGCG+R  E + L   +I  DQ  +RI Q KG K RIV L   +  
Sbjct: 141 --LKAR--VMLSLAYGCGMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDILS 196

Query: 209 AILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            + +++   P   + ++  P   LF G RGK L+     R  ++  R  G+    T HTL
Sbjct: 197 LLRDWWKERPTGQDKDVPAPERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTL 256

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           RHSFATHLL  G D+R IQ++LGH +L+TT  Y +V +
Sbjct: 257 RHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVAT 294


>gi|312872353|ref|ZP_07732423.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           2062A-h1]
 gi|312873924|ref|ZP_07733960.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           2052A-d]
 gi|329921329|ref|ZP_08277767.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN 1401G]
 gi|311090473|gb|EFQ48881.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           2052A-d]
 gi|311092176|gb|EFQ50550.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           2062A-h1]
 gi|328934621|gb|EGG31125.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN 1401G]
          Length = 307

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 153/321 (47%), Gaps = 42/321 (13%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           + LK   N+L+N   ER  S  T ++Y  D  +      F+ E    I  ++ LS  +I 
Sbjct: 6   DFLKLYYNYLKN---ERNYSINTCKAYMDDLSEAR---TFFVENGGFIDWLK-LSSRDIE 58

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALN 130
            FI     +K    +  R +S ++SF ++L KR I       ++++R   K+  LP  L 
Sbjct: 59  IFIQYLAQKKYKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGDHKN--LPEFLY 116

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             + + ++ ++       T  +  RN A+L L Y  G+R+SE  +L    +  + + + +
Sbjct: 117 SDEMVKVLKSI-----STTTPLGLRNMALLELFYATGMRVSEIANLKLDQVDFELNLILV 171

Query: 191 QGKGDKIRIVP------------LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
            GKG+K R V             L+ + +K +L   D     LN N  +   RG+     
Sbjct: 172 HGKGNKDRYVAFGEEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNMITSRGL----- 226

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                +  I+ +    G+  S   H LRH+FAT +L+NG DLR++Q +LGH  +STTQIY
Sbjct: 227 -----EYIIKNIFLNAGISASVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIY 281

Query: 299 TNVNSKNGGDWMMEIYDQTHP 319
           T+V  ++    + +IY +  P
Sbjct: 282 THVTKQH----LCDIYHKYFP 298


>gi|320535374|ref|ZP_08035488.1| putative tyrosine recombinase XerC [Treponema phagedenis F0421]
 gi|320147776|gb|EFW39278.1| putative tyrosine recombinase XerC [Treponema phagedenis F0421]
          Length = 307

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 147/316 (46%), Gaps = 33/316 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  +   +  SK T+ SY  D    L+F ++ T+ ++      +L  ++IR F++  
Sbjct: 8   EKYLDYIAGIKHFSKQTVISYRND---LLLFDSWLTDSELKFT---ELGVSDIRIFVADL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R +K    S+ R L+ ++   +Y  +  +   +  L ++NLK    LPR L  +QA    
Sbjct: 62  REKKFAPASINRMLATVRGLYRYAVRLNLCQTNPALAVKNLKLPKKLPRFLFPEQAKEFY 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +   L  +    W +AR++A+  +LY  G R+SE   L  +NI    ++  + GKG K R
Sbjct: 122 N---LPVNKGLLW-EARDAALFSVLYSTGCRVSEIAGLDMKNIDSKLNSAIVLGKGSKER 177

Query: 199 IVPLLPSVRKAILEYY------------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            V       K  L+ Y                 D     +  LF   RG PL+    Q Y
Sbjct: 178 KV-FFADFAKEYLQIYLAERNELLKKHAGEIQRDKTGRKRDALFINQRGMPLSVQGIQ-Y 235

Query: 247 IRQLRRYLGLPLS---TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           I  + RY  +       + H  RHSFA+ L+S G D+R +Q +LGH  +STTQ YT+V  
Sbjct: 236 I--IDRYAAVSPDLKKISPHVFRHSFASTLISRGADIRVVQEMLGHENISTTQKYTHVTP 293

Query: 304 KNGGDWMMEIYDQTHP 319
               + +  +Y + HP
Sbjct: 294 ----ELLQMLYHRAHP 305


>gi|256850237|ref|ZP_05555666.1| integrase-recombinase [Lactobacillus crispatus MV-1A-US]
 gi|262046371|ref|ZP_06019333.1| integrase [Lactobacillus crispatus MV-3A-US]
 gi|256712874|gb|EEU27866.1| integrase-recombinase [Lactobacillus crispatus MV-1A-US]
 gi|260573242|gb|EEX29800.1| integrase [Lactobacillus crispatus MV-3A-US]
          Length = 270

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 116/233 (49%), Gaps = 6/233 (2%)

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +I+ ++     +K+   S  R +S + SF ++L +RK+        +   +    LP+  
Sbjct: 24  DIQVYLQHLAERKLARSSQLRKMSSLHSFYRFLTRRKLVAIDPTKGITLRRGEKKLPQFF 83

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            + +   + D++        K +  RN A+  L Y  G+R+SE  +LT   +  D  T+ 
Sbjct: 84  YQPELKQVFDSL-----KGNKPLTMRNLAMFELFYATGMRVSEVSNLTLNQLDLDLQTIL 138

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           + GKG+K R V      +K+++ Y +   P  L  + +  +F   +G  +     +  ++
Sbjct: 139 VHGKGNKDRYVAFDDKTKKSLIAYLENARPLLLKNDDEQHVFLNNQGTGITSRGIETVMQ 198

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +     G+      H LRHSFAT +L+NG DLRS+Q +LGH  LS TQIYT+V
Sbjct: 199 KTFNQAGISGKVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHV 251


>gi|161507474|ref|YP_001577428.1| integrase-recombinase [Lactobacillus helveticus DPC 4571]
 gi|160348463|gb|ABX27137.1| Integrase-recombinase [Lactobacillus helveticus DPC 4571]
          Length = 242

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 114/230 (49%), Gaps = 17/230 (7%)

Query: 81  QKIGDRSLKRS-----LSGIKSFLKYLKKRK---ITTESNILNMRNLKKSNSLPRALNEK 132
           Q + DR L RS     +S + SF ++L +RK   I     I   R  KK   LP      
Sbjct: 2   QNLADRKLVRSSQARQMSSLHSFFRFLTRRKFIKIDPTQGITLRRGEKK---LPEFFFGN 58

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   + D++        K +  RN A+  L Y  G+R+SE  +LT + I  +  T+ + G
Sbjct: 59  ELKQVFDSL-----KGNKPLTMRNLALFELFYATGMRVSEVSNLTLRQIDLNLQTILVHG 113

Query: 193 KGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG+K R V      +K+++ Y  D  P  L    +  +F    G PL+    +  +++  
Sbjct: 114 KGNKDRYVAFDDHTKKSLVRYLEDARPNLLKDETEQHVFLSNLGNPLSKRGIEYVMQKTF 173

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              G+      H LRH+FAT +L+NG DLRS+Q +LGH  LS TQIYT+V
Sbjct: 174 NQAGISGKVHPHELRHTFATAMLNNGADLRSVQELLGHSSLSATQIYTHV 223


>gi|254449766|ref|ZP_05063203.1| phage integrase [Octadecabacter antarcticus 238]
 gi|254450115|ref|ZP_05063552.1| phage integrase [Octadecabacter antarcticus 238]
 gi|254450532|ref|ZP_05063969.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264172|gb|EDY88442.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264521|gb|EDY88791.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264938|gb|EDY89208.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 320

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 114/218 (52%), Gaps = 18/218 (8%)

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           ++++G+K  L+   +R       +  + +LK+   +P  L++K+    +  +L       
Sbjct: 91  QTMTGVKFLLRVTLRR----HDLVAEIFHLKEPVKVPLVLSKKE----IKRILAMAPS-- 140

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRK 208
             + AR   +L L YGCG+R  E + L   +I  DQ  +RI Q KG K RIV L   +  
Sbjct: 141 --LKAR--VMLSLAYGCGMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDILS 196

Query: 209 AILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            + +++   P   + ++  P   LF G RGK L+     R  ++  R  G+    T HTL
Sbjct: 197 LLRDWWKERPTGQDKDVPAPERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTL 256

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           RHSFATHLL  G D+R IQ++LGH +L+TT  Y +V +
Sbjct: 257 RHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVAT 294


>gi|256825348|ref|YP_003149308.1| site-specific tyrosine recombinase XerD [Kytococcus sedentarius DSM
           20547]
 gi|256688741|gb|ACV06543.1| tyrosine recombinase XerD subunit [Kytococcus sedentarius DSM
           20547]
          Length = 316

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 138/310 (44%), Gaps = 22/310 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + WL +L +ERGLS  T  +Y  D   ++  L     +     +   +   ++R  ++  
Sbjct: 10  EEWLAHLGVERGLSANTTSAYRRDLVAWVAHL-----DAAGRTSWPSVQAADVRQHLADL 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   ++ R +  ++ F  +             ++        LP+AL+  +   L+
Sbjct: 65  TASGRARSTVTRMVVAVRRFHAFALAEGWVEVDVAADVAPPAAVQPLPKALSLDEVARLI 124

Query: 139 DNVLLHTSHETKWIDA-------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           ++    T       DA       R+ A+L LLYG G R+SE  SL   ++  D   +R+ 
Sbjct: 125 ES----TGPVEGGADAVELAVARRDRAVLELLYGTGARVSEVTSLDVDDVDLDGLVVRLV 180

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           GKG K R VPL  +   A+ ++       L    +    L    RG+ L        +  
Sbjct: 181 GKGSKERHVPLGGAAAAAVGDWLATGRPVLAARGSGGAALLLNQRGRRLGRQSAWALVTA 240

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             R  GL    + HTLRHS+ATHL++ G D+R +Q +LGH  ++TTQIYT V      D 
Sbjct: 241 AGRRAGLGEHLSPHTLRHSYATHLMAGGADVRVVQELLGHASVTTTQIYTRVTP----DH 296

Query: 310 MMEIYDQTHP 319
           + E++ ++HP
Sbjct: 297 LREVFQESHP 306


>gi|225175744|ref|ZP_03729737.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
 gi|225168668|gb|EEG77469.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
          Length = 300

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 145/294 (49%), Gaps = 21/294 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQF--LIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +Q +   LEIERGLS  T++ Y  D   F  L+   F+ +  I    + QL    +R F+
Sbjct: 9   QQEFTDYLEIERGLSDGTVEGYRRDLNIFTQLMVREFFPQGMI----LDQLETKHVRRFL 64

Query: 76  ---SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
               K R+   G R+  R L+ ++S+  +L+ +     + +  ++N+K +  LP  L + 
Sbjct: 65  VYLKKERSNDAGTRN--RKLASLRSYFSFLEIQGYVESNPVQQLKNVKTAKLLPVFLTKD 122

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           ++  L++   +H          R+ A++ +L   G R+ E +SL   ++  +   +RI G
Sbjct: 123 ESDRLINAARMHNKPPY-----RDYAMMRVLLQTGCRLDEMVSLNLDSLNLEDRYMRIIG 177

Query: 193 KGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG+K R++PL      A+ EY     P D N   +  +F   RG+ ++    Q    Q  
Sbjct: 178 KGNKERMIPLTDKTCAALAEYLAGRLPEDKN---EQAVFLNQRGRRISHRGVQLIFNQTC 234

Query: 252 RYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +  GL     T H LRH+  T LL+ G DL +I+ I GH  +S+T+IY +V  +
Sbjct: 235 KEAGLNKERLTVHKLRHTCFTMLLNAGVDLPTIKDIAGHENISSTEIYVHVTQR 288


>gi|77164210|ref|YP_342735.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
 gi|76882524|gb|ABA57205.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
          Length = 310

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 141/306 (46%), Gaps = 25/306 (8%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +  + R+++L +L   +G S+ T  +Y  D    L     + EE    +  RQ ++ +  
Sbjct: 7   DFWQARKDFLAHLHYAKGYSQGTCYAYHSD----LGIWGRWLEE--ASKDWRQATHLDTE 60

Query: 73  AFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP----- 126
            F++ + R +      + R  S + SF K+  K  +     I      K+   +P     
Sbjct: 61  QFVAWQMRKRGTKAHIVARRSSCLGSFYKWAMKNALVESDPIYLADKPKRPYRIPVWLEK 120

Query: 127 ---RALNE--KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              RA  E  ++   L +N+   T    K +  R   +  L+   GLRISEAL++  +++
Sbjct: 121 EEQRAFQEAVQRVEDLPENIFGRTQEHIKAVRRRYDVLFGLILNSGLRISEALAVKVRDV 180

Query: 182 M---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
                   ++RI GKG++ R+VPL P     +L  +                +    KP 
Sbjct: 181 RMVNGVAKSVRIIGKGNRERLVPL-PEAFGQVLGAW----LQGRGGEDFVFAKAPGEKPP 235

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            P   + Y+R+L    G+    T H LRH++AT LL +G +L  IQ++LGH  LSTTQIY
Sbjct: 236 GPHAVRAYLRRLIERAGIDKPVTPHKLRHTYATRLLESGAELVDIQALLGHVDLSTTQIY 295

Query: 299 TNVNSK 304
           T+V+ +
Sbjct: 296 THVSEE 301


>gi|319404882|emb|CBI78483.1| integrase/recombinase XerD [Bartonella rochalimae ATCC BAA-1498]
          Length = 307

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 143/290 (49%), Gaps = 18/290 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY--TEIRAFISKR 78
           +L+ +  ERG S  TL +Y+ D +        + + K++  +I   S    ++   +S  
Sbjct: 10  FLEMMSAERGASVCTLLAYQHDLQ--------WAQNKLSSHSISFFSAQREDLINLLSLM 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +       S  R LS ++ F ++L    +  +    ++ + ++   LP+ ++E     L+
Sbjct: 62  QKAGCAATSQARRLSTLRQFFQFLYAEGLREDDPSSDIDSPRQGRPLPKIISEDAMAKLL 121

Query: 139 DNVLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           D   L T       +  +   R   +L +LY  GLRISE +SL  Q +   +  + ++GK
Sbjct: 122 DFAQLETEQAESGTQNYYRALRFQVLLEMLYATGLRISELVSLPVQAVRGKEQFILVRGK 181

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G+K R+V L    R+ +L++  +     +  +I L   R   G      V  R ++ L +
Sbjct: 182 GEKERVVLLSEKARQILLQWLSVRDQRKDATSIYLFPARSSTGYIARQFV-ARGLKDLAK 240

Query: 253 YLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             G+     + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V
Sbjct: 241 RAGIQSENFSPHVLRHAFASHLLQNGADLRAVQHLLGHRDISTTQIYTHV 290


>gi|319654625|ref|ZP_08008706.1| hypothetical protein HMPREF1013_05328 [Bacillus sp. 2_A_57_CT2]
 gi|317393691|gb|EFV74448.1| hypothetical protein HMPREF1013_05328 [Bacillus sp. 2_A_57_CT2]
          Length = 328

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/279 (30%), Positives = 132/279 (47%), Gaps = 32/279 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GLSK+TL SY          L   T  K   + +  ++  EIR F+      K+   S+ 
Sbjct: 66  GLSKVTLDSY---------LLELNTFSKKVKKRVEDITTAEIRVFLGSFEHLKLS--SVS 114

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R LS +KSF  +L   +         ++  KK   LP+AL      ++ +  LL  S +T
Sbjct: 115 RKLSVLKSFFGWLTAEEFLQRDPTTKIKPPKKEKRLPKAL------SIEELELLRESCKT 168

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS---- 205
                R  A L +LY  G R+SE  +L    I +  ++ R+ GKG+K R V   P     
Sbjct: 169 N----RQRAFLEILYATGCRLSEVHALNKSGINNRTASCRVIGKGNKEREVYFSPKAMYH 224

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           +RK ++   D C   L +  + P  R      L+    QR I  + +  GL    + HT+
Sbjct: 225 LRKYLMNRTDDCE-ALMVTERKPYRR------LSQRGIQREISIIAKQAGLDKKISPHTM 277

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           RH+FAT  L+NG D+ ++Q++LGH   +TTQIY  +  +
Sbjct: 278 RHTFATLTLNNGADIAAVQALLGHEDPATTQIYAQLTEE 316


>gi|212710173|ref|ZP_03318301.1| hypothetical protein PROVALCAL_01227 [Providencia alcalifaciens DSM
           30120]
 gi|212687172|gb|EEB46700.1| hypothetical protein PROVALCAL_01227 [Providencia alcalifaciens DSM
           30120]
          Length = 309

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 152/312 (48%), Gaps = 28/312 (8%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L+ + + +L+ L +ER LS +T+ +Y    RQ  +      E K+     ++L  T  R+
Sbjct: 13  LMIQVEAFLRYLRVERRLSPVTITNYR---RQLSVVCQILGELKVN--QWQKLDITLGRS 67

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             +K R   +   S+   LS ++SF  ++ ++     + +  +   K    LP+ ++   
Sbjct: 68  IAAKSRRTGLQAASMALRLSALRSFCDWMVQQGELPANPVKTLHAPKAKKRLPKNMD--- 124

Query: 134 ALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
               VD +  LL+       +  R+  +L ++YG GLR+SE + L  +++  D   + + 
Sbjct: 125 ----VDEISQLLNMDSGDPLV-VRDRTMLEVMYGAGLRLSELVGLDVKHLDLDLGEVWVM 179

Query: 192 GKGDKIRIVPL---LPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           GKG K R +PL     S  K  LE  +L  P D  + I     + I  + +     Q  I
Sbjct: 180 GKGSKERKIPLGKTAVSWLKRWLEMRELYEPVDGAVFISTQSGKRISNRNVQKRFEQWGI 239

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +Q      +      H LRHSFATH+L + G+LR +Q +LGH  LSTTQIYT+++ ++  
Sbjct: 240 KQ-----EVNSHINPHKLRHSFATHILESSGNLRGVQELLGHANLSTTQIYTHLDFQH-- 292

Query: 308 DWMMEIYDQTHP 319
             +  +YD  HP
Sbjct: 293 --LANVYDVAHP 302


>gi|170747111|ref|YP_001753371.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
 gi|170653633|gb|ACB22688.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
          Length = 291

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 129/282 (45%), Gaps = 15/282 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  ERG    TL +Y  D   +L +LA       +   +  +    +RAF+    T+ + 
Sbjct: 2   LAAERGAGLNTLSAYRRDLDDYLGYLAR------SGTALGDVDAGTLRAFLIDLETRGLK 55

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R LS ++ F K+L           + +   ++  +LP+ L+  +   L+      
Sbjct: 56  ASSAARRLSCVRGFHKFLYAEGGAESDPSVAVSGPRRGRALPKVLSIAEVDRLLATAQAA 115

Query: 145 TSHETKWIDARNS----AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
              +     AR +     +L LLY  GLR+SE ++L        +  L ++GKG + R+V
Sbjct: 116 AGADQPPGPARRARRMVCLLELLYATGLRVSELVALPRTAGASRERYLIVRGKGGRERLV 175

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLS 259
           PL  + R A+  +    P D           G     L    F R ++ L    GL P  
Sbjct: 176 PLTEAARAAMAAHLPAVPEDSPWLFPADSDSGY----LTRQAFARDLKVLAAAAGLHPDR 231

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            + H LRH+FA+HLL NG DLR +Q +LGH  +STTQIYT+V
Sbjct: 232 VSPHVLRHAFASHLLQNGADLRIVQELLGHADISTTQIYTHV 273


>gi|313888282|ref|ZP_07821953.1| phage integrase, N-terminal SAM domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845685|gb|EFR33075.1| phage integrase, N-terminal SAM domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 329

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 152/309 (49%), Gaps = 36/309 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA-------------FYTEEKITIQTIRQ 65
            ++L  ++  +G S  T++ Y  D R F  F+                T E I+   +  
Sbjct: 8   DDFLDYMKSTKGASDNTVKEYYYDLRMFARFIKRRKGLVDSKIEFDHITIEDISPDLLES 67

Query: 66  LSYTEIRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKSN 123
           ++  +I A+ +   R +KI +RS  R +S I+SF  YL  +  I   + ++++   K   
Sbjct: 68  VTKQDIYAYNAFLERERKISNRSKFRKISSIRSFYNYLHAKIDIIKINPVIDIDMPKVEK 127

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETK---WIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +LP  L   Q+L L     L T  E+K       R+ AI+ L   CG+R+SE   +   +
Sbjct: 128 TLPVYLTLDQSLNL-----LKTIEESKIKPLYKKRDYAIVTLFLNCGMRLSELAGMDISH 182

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKP 237
           +  D +TL++ GKG+K R++ L  +   AI EY  L P       Q+    LF  +R + 
Sbjct: 183 LQQD-NTLKVIGKGNKERVIYLNEASVYAIEEYLKLRP-------QIKDDALFLSMRQQR 234

Query: 238 LNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTT 295
           ++    Q  I +  +  GL  +  + H LRH+ AT L   G  D+R++Q ILGH  ++TT
Sbjct: 235 MSNRSIQHMIEKHMKNSGLDTNIYSVHKLRHTAATLLYEYGNADIRALQEILGHESVNTT 294

Query: 296 QIYTNVNSK 304
           +IYT+VN K
Sbjct: 295 EIYTHVNKK 303


>gi|254455124|ref|ZP_05068559.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198263534|gb|EDY87806.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 320

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 114/218 (52%), Gaps = 18/218 (8%)

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           ++++G+K  L+   +R       +  + +LK+   +P  L++K+    +  +L       
Sbjct: 91  QTMTGVKFLLRVTLRR----HDLVAEIFHLKEPVKVPLVLSKKE----IKRILAMAPS-- 140

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRK 208
             + AR   +L L YGCG+R  E + L   +I  DQ  +RI Q KG K RIV L   +  
Sbjct: 141 --LKAR--VMLSLAYGCGMRAGEVVRLKVGDIDSDQGIIRIVQSKGRKDRIVMLPVDILS 196

Query: 209 AILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            + +++   P   + ++  P   LF G RGK L+     R  ++  R  G+    T HTL
Sbjct: 197 LLRDWWKERPTGQDKDVPAPERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTL 256

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           RHSFATHLL  G D+R IQ++LGH +L+TT  Y +V +
Sbjct: 257 RHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVAT 294


>gi|84516057|ref|ZP_01003417.1| tyrosine recombinase XerD [Loktanella vestfoldensis SKA53]
 gi|84509753|gb|EAQ06210.1| tyrosine recombinase XerD [Loktanella vestfoldensis SKA53]
          Length = 306

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 144/317 (45%), Gaps = 33/317 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +LQ    E   +  T  +Y  D + F  +LA             Q++  +I +++   
Sbjct: 6   QTFLQAQAAELDAATNTQLAYARDLQGFAEWLASRGLH------FMQVTQDQIESYLIDC 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +   +  R LS IK   ++        ++  L ++   ++  LP+ L+    L  V
Sbjct: 60  AADGLAKSTRARRLSAIKQLFRFAYDEGWRADNPALQIKGPGRAQRLPKTLD----LAEV 115

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D  LL  +  +     RN  ++ LLY  G+R+SE +SL       D   L ++GKG K R
Sbjct: 116 DR-LLDAARASPRDGLRNGCLMELLYATGMRVSELVSLPVSAARGDPRMLLVRGKGGKER 174

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR--QLRR--YL 254
           +VPL P  R A+  +         +  +        GKP +  +F  + +   L R  + 
Sbjct: 175 LVPLSPPARAAMAAWLAARDAAQEVAQKA-------GKPASKFLFPSHGKAGHLTRHAFF 227

Query: 255 GL-----------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           GL           P   T H LRH+FATHLL+ G DLRSIQ++LGH  ++TT+IYT+V  
Sbjct: 228 GLIKGFAVTAGLSPERVTPHVLRHAFATHLLAGGADLRSIQTMLGHADIATTEIYTHVLD 287

Query: 304 KNGGDWMMEIYDQTHPS 320
           +   D +++ +    P+
Sbjct: 288 QRLTDLVLQHHPLAKPT 304


>gi|297170713|gb|ADI21736.1| site-specific recombinase XerD [uncultured actinobacterium
           HF0130_15N16]
          Length = 317

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 143/315 (45%), Gaps = 33/315 (10%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E + ++ +LE  R L + T  SY  D   F  +L    EE + ++         I ++++
Sbjct: 13  EVEQFMHSLE-SRNLQESTRYSYGRDLESFRSWLDGRGEEIMMVEE------GTINSYVA 65

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI-----LNMRNLKKSNSLPRALNE 131
             R        + R+   I+SF KYL     T E +I       +  LK     P+A++ 
Sbjct: 66  HLRKSGRAPSGVARATVSIRSFYKYL-----TLEGHIKVDPGAAIAVLKVPQGFPKAIDI 120

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           ++    V+ +L     E  ++  R+ AIL  LYG GLR+SE  +L   ++  + S LR+ 
Sbjct: 121 EK----VERLLNTPVGEGPYV-LRDRAILETLYGAGLRVSELTALVVDDVDLEDSFLRVF 175

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-------IQLPLFRGIRGKPLNPGVFQ 244
           GKG K R+VPL    + A+  +      ++ L         Q  +F    G PL+     
Sbjct: 176 GKGRKERVVPLGGHAKDALAAWMSGAGREVLLERRKRTDQAQRNVFLNKFGNPLSRKGTW 235

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +R+     GL    T H LRHS ATH+L  G  +R +Q +LGH  + +TQ+YT     
Sbjct: 236 AIVRRHGLRAGLGDDLTPHVLRHSCATHMLEAGASIRHVQELLGHSSIRSTQVYTGRREA 295

Query: 305 NGGDWMMEIYDQTHP 319
                +  IY + HP
Sbjct: 296 E----LKAIYLEKHP 306


>gi|292486680|ref|YP_003529550.1| tyrosine recombinase xerC [Erwinia amylovora CFBP1430]
 gi|292897917|ref|YP_003537286.1| tyrosine recombinase [Erwinia amylovora ATCC 49946]
 gi|291197765|emb|CBJ44860.1| tyrosine recombinase [Erwinia amylovora ATCC 49946]
 gi|291552097|emb|CBA19134.1| Tyrosine recombinase xerC [Erwinia amylovora CFBP1430]
          Length = 302

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 149/307 (48%), Gaps = 19/307 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL   + +L+ L++ER LS LT  +Y       ++ L     +++ +    +L  + +R+
Sbjct: 7   LLTATEGFLRYLKVERQLSPLTQVNYRRQLSAIIVLL-----DELKVVEWARLDASLVRS 61

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             ++     +   SL   LS ++SFL +L  +     +    +   + +  LP+ ++  +
Sbjct: 62  LAARSTRSGLKPASLALRLSALRSFLDWLVSQGAIKANPAKGVATPRAARHLPKNIDVDE 121

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++  L         +  R+ A+L  +YG GLR+SE + +   ++      + + GK
Sbjct: 122 VNRLLEIDL------NDPLAVRDRAMLEAMYGAGLRLSELVGIDLGHLDLASGEVWVIGK 175

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K R +P+  +    +  +  +   F+   N    LF   +GK ++    Q+   +   
Sbjct: 176 GSKERRLPMGRTAVHWVENWLAMRELFEPQDN---ALFLSNQGKRISTRNVQKRFAEWGV 232

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+      H LRHSFATH+L + GDLR++Q +LGH  L+TTQIYT+++ ++    +  
Sbjct: 233 KQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----LAS 288

Query: 313 IYDQTHP 319
           +YD  HP
Sbjct: 289 VYDAAHP 295


>gi|297184071|gb|ADI20190.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
          Length = 343

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 161/306 (52%), Gaps = 27/306 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L  ERG S  T  +Y+ +  ++ ++L    EE     +++      ++ +I  R  
Sbjct: 55  FLAYLIAERGYSPKTSVAYKKELERWALYL---REE--ADASLKAAQKAHVKRYIVWRNK 109

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q I  RS+ RSLS I++F K+  +  +  E+    +R++K +  +  ++ +     LV++
Sbjct: 110 QGISPRSINRSLSCIRTFYKWAIREALVCENPGQGVRSMKTAKKVVMSVPKDDLKALVND 169

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L T   T +   R+  +L LLYG GLR +E +SLTP +    +  +R+ GK +K R +
Sbjct: 170 PELFT---TDFEGRRDQLLLLLLYGLGLRRAEVISLTPTHFDWSRKLVRVIGKRNKERQI 226

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP------LFRGIRGKPLNPG-VFQRYIRQLRRY 253
           P+      A+LE Y L    + +  QLP      L    +GK L    V+ R +  L R 
Sbjct: 227 PM-----PALLEEYYL--RYVEIRDQLPVRHDATLLLTAKGKKLYDNLVYNRVLFYLNRT 279

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             + +    H LRHS+ATHLL+ G D+ +++ +LGH  LS+TQ+YT     +  + ++++
Sbjct: 280 TSV-VDKNPHALRHSYATHLLNAGVDINTVKELLGHESLSSTQVYTT----SSFEELIKV 334

Query: 314 YDQTHP 319
           Y+QTHP
Sbjct: 335 YNQTHP 340


>gi|254452011|ref|ZP_05065448.1| integrase [Octadecabacter antarcticus 238]
 gi|198266417|gb|EDY90687.1| integrase [Octadecabacter antarcticus 238]
          Length = 202

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 84/149 (56%), Gaps = 4/149 (2%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC 217
           +L L YGCG+R  E + L   +I  DQ  +RI Q KG K RIV L   +   + +++   
Sbjct: 28  MLSLAYGCGMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDILSLLRDWWKER 87

Query: 218 PFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           P   + ++  P   LF G RGK L+     R  ++  R  G+    T HTLRHSFATHLL
Sbjct: 88  PTGQDKDVPAPERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTLRHSFATHLL 147

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             G D+R IQ++LGH +L+TT  Y +V +
Sbjct: 148 ERGVDIRVIQALLGHSKLTTTARYASVAT 176


>gi|163869346|ref|YP_001610602.1| integrase/recombinase XerD [Bartonella tribocorum CIP 105476]
 gi|161019049|emb|CAK02607.1| integrase/recombinase XerD [Bartonella tribocorum CIP 105476]
          Length = 312

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 156/318 (49%), Gaps = 23/318 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY--TEIRAFIS 76
           + +L+ +  ERG S  TL +Y+ D +        + +++++  ++   S    ++   +S
Sbjct: 8   ERFLEMMSAERGASAHTLAAYQHDLQ--------WAQDELSSHSVSLFSAQKEDLIGLLS 59

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              T      S  R LS ++ F ++L    +  +    ++   ++   LP+ ++E   + 
Sbjct: 60  LMHTFGFAATSQARRLSTLRQFYQFLYAEGLRADDPSHDIDAPRQGRPLPKIISEDVVIK 119

Query: 137 LVDNVLLHTSH----ETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            +D   L  +        ++ A R   +  +LY  GLRISE +SL  Q +   + +L ++
Sbjct: 120 FLDLAQLEVNQADYGSKDYLRALRLQLLSEMLYATGLRISELVSLPVQAVRGKEYSLLVR 179

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQL 250
           GKG K R+V L     + +L++ DL     +    L LF        +   V  R ++ L
Sbjct: 180 GKGKKERMVLLSKKAYQVLLQWLDLRDQGKDAK-SLYLFPAHSETGYIARQVVARELKNL 238

Query: 251 RRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            +  G+   S + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V  +     
Sbjct: 239 AKRAGITSESFSPHVLRHAFASHLLQNGADLRAVQHLLGHSDISTTQIYTHVLEEG---- 294

Query: 310 MMEIYDQTHP-SITQKDK 326
           +  + ++ HP + TQK +
Sbjct: 295 LYRLVNEHHPLADTQKAR 312


>gi|160900549|ref|YP_001566131.1| tyrosine recombinase XerD [Delftia acidovorans SPH-1]
 gi|160366133|gb|ABX37746.1| tyrosine recombinase XerD [Delftia acidovorans SPH-1]
          Length = 327

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 141/283 (49%), Gaps = 15/283 (5%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           +  L +E GLS+ TL +Y  D   +  +LA + +  + +    +L   E++ + + R  Q
Sbjct: 41  MDALLLEDGLSRNTLAAYRRDLTAWGRWLA-HQQPPLALDAAGEL---ELQGYFAVRVEQ 96

Query: 82  KIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                S  R L+ ++ +  + L++++I  +     M   ++   +P  L + Q    V+ 
Sbjct: 97  TKASSS-NRRLTVLRRYYHWALREQRIAADPTA-RMLAARQPPRVPHTLTQAQ----VEA 150

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +L     +T  +  R+ A+L L+Y  GLR+SE + L    I      LR+ GKG K R+V
Sbjct: 151 LLRAPDVDTP-LGLRDRAMLELMYASGLRVSELVDLPLHGIDLRSGVLRVTGKGQKERLV 209

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           P         LE Y        L  Q    +F   RG  ++  +F   +++  +  G+  
Sbjct: 210 PFGQEAHW-WLERYLATARGAILGGQRSDAVFVTQRGAAMSRVMFWVIVKRCAQVAGVTA 268

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             + HTLRH+FATHLL++G DLR +Q +LGH  +STT IYT+V
Sbjct: 269 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHV 311


>gi|17547263|ref|NP_520665.1| site-specific tyrosine recombinase XerD [Ralstonia solanacearum
           GMI1000]
 gi|34222936|sp|Q8XWD0|XERD_RALSO RecName: Full=Tyrosine recombinase xerD
 gi|17429565|emb|CAD16251.1| probable integrase/recombinase protein [Ralstonia solanacearum
           GMI1000]
          Length = 308

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 140/303 (46%), Gaps = 18/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +   L +E GL++ TL +Y  D   +  +LA         + + Q    ++  + + R
Sbjct: 20  QRFCDALWLEDGLARNTLDAYRRDLTLYAQWLAGRG------KALDQTEDVDLSDYFAAR 73

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +   + +R  +  K F ++  +  + +      +   K+   +P+ L+E Q   L+
Sbjct: 74  HEDSLASTANRRR-TVFKRFFQWALREHLVSADPTRLLSTAKQPPRVPKTLSEAQVEALI 132

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKI 197
               +        +  R+ A++ L+Y  GLR+SE ++L    +  ++  +R I GKG K 
Sbjct: 133 AAPDVDAP-----LGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEGVVRVIGGKGGKD 187

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP        +  Y  D     L       LF   RG  +    F   I++  +   +
Sbjct: 188 RLVPFGAEAGDWLRRYLRDGRTALLGERTADALFVTARGDGMTRQAFWYLIKRYAQRADI 247

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++ Q
Sbjct: 248 HAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARER----LRTLHAQ 303

Query: 317 THP 319
            HP
Sbjct: 304 HHP 306


>gi|284032633|ref|YP_003382564.1| integrase family protein [Kribbella flavida DSM 17836]
 gi|283811926|gb|ADB33765.1| integrase family protein [Kribbella flavida DSM 17836]
          Length = 312

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 148/301 (49%), Gaps = 13/301 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++ ++L  ERGLS+ ++++Y  D    +  +     + ++   IR L     R++++K++
Sbjct: 22  DYERHLTAERGLSEHSVRAYMGDVADLIDHVTRLGHDDLSALDIRGL-----RSWLAKQQ 76

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +      ++ R  +  + F  + ++  +I T+   L + + K   +LP  L +     ++
Sbjct: 77  SLGKARSTMARRATAARVFTAWAQRTGRIATDPGAL-LASPKAHKTLPGVLGQADTRAVL 135

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D   +     +  +  R+  I+ LLY  G+R+ E  +L    +   +  +R+ GKG K R
Sbjct: 136 DAAAVAADDGSP-VGLRDLTIMELLYATGIRVGELCALDVDEVDRSRRVVRVFGKGRKER 194

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            VP      +A+  +  + P  +       LF G RG  ++    +R +      +  P 
Sbjct: 195 SVPYGVPAAEALETWLAVRPRLVRDGSGPALFLGARGGRIDQRTVRRVVHARIGAVEAP- 253

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+ ATHLL  G DLRS+Q +LGH  L+TTQ+YT+V+S+     +   Y+Q H
Sbjct: 254 DLSPHGLRHTAATHLLEGGADLRSVQELLGHASLATTQVYTHVSSER----LRSAYEQAH 309

Query: 319 P 319
           P
Sbjct: 310 P 310


>gi|225025733|ref|ZP_03714925.1| hypothetical protein EIKCOROL_02637 [Eikenella corrodens ATCC
           23834]
 gi|224941514|gb|EEG22723.1| hypothetical protein EIKCOROL_02637 [Eikenella corrodens ATCC
           23834]
          Length = 301

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 127/241 (52%), Gaps = 31/241 (12%)

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R+LS +K    +L+ +   +++   ++R  ++  +LP  + E Q    +D +L     ET
Sbjct: 79  RALSAVKQLYGFLQLQNRRSDNPAQHLRPPRQGRALPPLIGEAQ----IDALLAAPDTET 134

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL------- 202
            +   R+ A+L  LY  GLR+SEA  +  Q++   +  + + GKG+K RIVPL       
Sbjct: 135 IF-GLRDKAVLETLYATGLRVSEAAQMQLQDLDLQRGVVTVIGKGNKQRIVPLGAEAVYW 193

Query: 203 ----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
               L + R  +L++   C F         +F G +   ++  +  + +++     G+  
Sbjct: 194 LERYLKTARGELLKHTP-CDF---------VFVGQKRSGISRQLVWQMVKRYAAEAGIS- 242

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FATHL+++G DLRS+Q +LGH  L+TTQIYT+V ++     + ++  Q H
Sbjct: 243 ELSPHGLRHAFATHLVNHGADLRSVQMMLGHASLNTTQIYTHVANER----LKQLVAQHH 298

Query: 319 P 319
           P
Sbjct: 299 P 299


>gi|325269556|ref|ZP_08136172.1| site-specific tyrosine recombinase XerC [Prevotella multiformis DSM
           16608]
 gi|324988175|gb|EGC20142.1| site-specific tyrosine recombinase XerC [Prevotella multiformis DSM
           16608]
          Length = 297

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 142/304 (46%), Gaps = 23/304 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +ER  S +T+ SY  D  +F  F     E         QLS+  + + + +   
Sbjct: 10  FLDYLRLERNYSPMTVTSYRKDLEEFERFFQDLEE---------QLSWETVDSDVVRNWM 60

Query: 81  QKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           + + DR     S+ R LS ++SF ++  +R +     +  ++  K+   LP+ L E +  
Sbjct: 61  EDMMDRGNAASSVNRRLSSLRSFYRFALRRSLVRRDPVHGLQGPKRQKPLPQFLKESEME 120

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L++  +   S++    D     ++   Y  G+R+SE   L  +++      L++ GK D
Sbjct: 121 RLLEPGMWTDSYK----DVLARTLIMTFYETGVRVSELTGLDDKDVDGLTCELKVTGKRD 176

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RI+P    + + +  Y  +    +  +    LFR  +G  +  G  +  +++    + 
Sbjct: 177 KQRIIPFGRELAETLAAYRQVRGAAVKGD-SAALFRTEKGVRMTDGQVRALVKKHLSRVS 235

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                T H LRH+FAT +L++   L S++ +LGH  LSTT+IYT+   +     + ++Y 
Sbjct: 236 TLKKRTPHVLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQ----LKKVYK 291

Query: 316 QTHP 319
             HP
Sbjct: 292 NAHP 295


>gi|307565729|ref|ZP_07628198.1| phage integrase, N-terminal SAM domain protein [Prevotella amnii
           CRIS 21A-A]
 gi|307345555|gb|EFN90923.1| phage integrase, N-terminal SAM domain protein [Prevotella amnii
           CRIS 21A-A]
          Length = 292

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 145/301 (48%), Gaps = 15/301 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +E+G S  T++SY  D   F +F     +E++T+++I       IR ++   
Sbjct: 5   EQFLSYLSLEKGYSLKTIESYREDLNGFELFYK-SCDEQLTLKSIDS---DVIRNWVEYM 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
              K    S+ R LS ++S  +YL K +   +  +  +R  KK   LP  + E +    +
Sbjct: 61  MDNKAAVSSVNRRLSALRSLYRYLLKHRFVEKDPVHGVRGPKKQKPLPVFVKESE----M 116

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D +L        + D    AI+ +LY  G+R+SE   L   ++     T+++ GK +K R
Sbjct: 117 DCLLRKEMWGGVYNDVLARAIIMMLYETGMRLSEITGLDMSSVDFYTCTVKVTGKRNKQR 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           I+P+   + + +  Y       +++  +   F   +G  +N    +  +++    +    
Sbjct: 177 IIPIGQELEEELKSY---LKKRVSVEGEKAFFVTEKGIRVNANQVRYLVKKNLSKVSTLK 233

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             T H LRHSFAT +L++   L S++ +LGH  L+TT++YT+   +     + +IY   H
Sbjct: 234 KRTPHVLRHSFATAMLNHKAGLESVRKLLGHESLATTEVYTHTTFEQ----LKQIYKSAH 289

Query: 319 P 319
           P
Sbjct: 290 P 290


>gi|145593868|ref|YP_001158165.1| phage integrase family protein [Salinispora tropica CNB-440]
 gi|145303205|gb|ABP53787.1| phage integrase family protein [Salinispora tropica CNB-440]
          Length = 325

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 135/300 (45%), Gaps = 24/300 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  T+++Y  D    L         +   +T   L+  +IR++++++RT      +L R 
Sbjct: 36  STHTVRAYVADVISLLDHAV-----RAGARTPADLTLAQIRSWLARQRTTGAARSTLARR 90

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
            +  ++F  +  +           + + +    LP  L   QA  L++    H +   + 
Sbjct: 91  SAAARTFSAWAHRDGRLPVDVAAGLASPRAHRELPAVLPVDQAAALLETA--HAAPRGQP 148

Query: 152 IDA-----------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            D            R+  +L LLY  G+R+SEA  L   ++   +  LR+ GKG + R V
Sbjct: 149 TDDVPPGAADPVRLRDQLLLELLYATGVRVSEACGLNVADVDPGRRVLRVFGKGGRERSV 208

Query: 201 PL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P  +P+ R          P  +       L  G RG  LNP   +  + +     GLP  
Sbjct: 209 PYGVPAQRTLDAWLRHGRPRLVGAQSANALLLGARGGRLNPTTARGIVGRYTTAAGLP-R 267

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           T+ H LRH+ ATHLL  G DLR++Q +LGH  L++TQIYT+V+ +     +   Y Q HP
Sbjct: 268 TSPHGLRHTAATHLLEGGADLRTVQELLGHSSLASTQIYTHVSVER----LRSAYRQAHP 323


>gi|269121304|ref|YP_003309481.1| integrase family protein [Sebaldella termitidis ATCC 33386]
 gi|268615182|gb|ACZ09550.1| integrase family protein [Sebaldella termitidis ATCC 33386]
          Length = 304

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 151/314 (48%), Gaps = 42/314 (13%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L  E+G S+ TL SY+ D         F++E     Q+I      E+  ++ K  +
Sbjct: 10  FLDYLRYEKGSSENTLSSYKRDLN------LFFSEVPKNFQSIED---EEVIEYVDKL-S 59

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   ++ R ++ I++F K+    K  T++   +++NLK+   LP  L   +   ++D 
Sbjct: 60  KTVKRNTVLRKIASIRAFYKFCYINKYITDNPTESLKNLKREFKLPEVLKLSEIKDIID- 118

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGDKIRI 199
            + +T         R+  I+ +L   G RISE L+L  +++ + D   +R+ GKG K R+
Sbjct: 119 AIPNTPE-----GVRDKIIIKILVATGARISEVLTLDIKDVENQDYEFIRVLGKGSKYRL 173

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLN----------------IQLPLFRGIRGKPLNPGVF 243
           +P+   + + I  Y +     L L                 ++  LF G R +      F
Sbjct: 174 IPIYSQLEEEIKAYIENDRKILVLERKEKESENKNKKKGHELEYKLFLGTRREN-----F 228

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            + +++  +   +  +   H  RHS AT L++NG D+R +Q ILGH  +STT+IYT+V  
Sbjct: 229 WKRLKKYAKNAKIEKNVYPHIFRHSVATMLINNGADIRIVQEILGHVNISTTEIYTHV-- 286

Query: 304 KNGGDWMMEIYDQT 317
             G   + EIY++ 
Sbjct: 287 --GKRELKEIYNKV 298


>gi|259906886|ref|YP_002647242.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224962508|emb|CAX53963.1| Tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|283476679|emb|CAY72508.1| Tyrosine recombinase xerC [Erwinia pyrifoliae DSM 12163]
 gi|310766134|gb|ADP11084.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 302

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 146/307 (47%), Gaps = 19/307 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL   + +L+ L++ER LS LT   Y    RQ    +    E K+        +     A
Sbjct: 7   LLAGVEGFLRFLKVERQLSPLTQIGYR---RQLSAIIVLLDELKVVEWARLDAALVRALA 63

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             S R   K    +L+  LS ++SFL +L  +     +    +   + +  LP+ ++  +
Sbjct: 64  ARSTRSGLKPASLALR--LSALRSFLDWLVSQGAIKANPAKGVATPRAARHLPKNIDVDE 121

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D  L         +  R+ A+L ++YG GLR+SE + +   ++      + + GK
Sbjct: 122 VNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGIDLGHLDLASGEVWVVGK 175

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K R +P+  +    I  + ++   F+   N    LF   +GK ++    Q+   +   
Sbjct: 176 GSKERRLPMGRTAVHWIENWLEMRELFEPQDN---ALFLSNKGKRISTRNVQKRFAEWGV 232

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+      H LRHSFATHLL + GDLR++Q +LGH  L+TTQIYT+++ ++    +  
Sbjct: 233 KQGMSSHIHPHKLRHSFATHLLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----LAS 288

Query: 313 IYDQTHP 319
           +YD  HP
Sbjct: 289 VYDAAHP 295


>gi|218885463|ref|YP_002434784.1| tyrosine recombinase XerD [Desulfovibrio vulgaris str. 'Miyazaki
           F']
 gi|218756417|gb|ACL07316.1| tyrosine recombinase XerD [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 290

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 143/301 (47%), Gaps = 18/301 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+ L IERGL++ TL +Y  D   F  FLA   +  I ++   + +   +  +I   R
Sbjct: 3   GYLEYLLIERGLAENTLAAYAADLADFAGFLA---QGGIDLEAATEQT---LFLYIVDLR 56

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +  R+L R LS ++    +   +       +  + N K   +LP  L   +   ++ 
Sbjct: 57  RRGLTSRTLSRHLSALRGLFAHGVAQGQLAADPLRYLENPKLPRTLPDVLTRDEMAAVLA 116

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              L     +  +  R+  +L LLY  GLR+SE   L P +       +R+ GKG K RI
Sbjct: 117 RPDL-----SDRLGFRDRTMLELLYASGLRVSELCGLRPLDFDPMTGLVRVFGKGSKERI 171

Query: 200 VPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+  +  K +  Y  D  P      ++  LF    GK L      + +++     G+  
Sbjct: 172 VPVHDTAAKLLSAYIRDWRP--AFRPVEDALFLNRSGKGLTRQAVWKVVKRHVAEAGIRK 229

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HT RHSFATHLL  G DLR++Q +LGH  ++ T+IYT+V +    D + +++   H
Sbjct: 230 DISPHTFRHSFATHLLDGGADLRTVQMLLGHADIAATEIYTHVQA----DRLRQVHRAHH 285

Query: 319 P 319
           P
Sbjct: 286 P 286


>gi|117928754|ref|YP_873305.1| phage integrase family protein [Acidothermus cellulolyticus 11B]
 gi|117649217|gb|ABK53319.1| tyrosine recombinase XerC subunit [Acidothermus cellulolyticus 11B]
          Length = 336

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 149/332 (44%), Gaps = 44/332 (13%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + ++L+ ER LS  T+++Y  D R  +        E++  +    L+   +R++++K  T
Sbjct: 14  FARHLQYERSLSSHTVRAYLTDLRDLVDH-----AERLGCREPADLTVAVLRSYLAKLDT 68

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                 ++ R  +  + F  Y  K+   +      +   K    LP  L + QA  +++ 
Sbjct: 69  VGRARTTIARRAAAARVFTAYCSKKGWMSHDPGRRLGTPKVVRPLPDVLTQAQARAVLER 128

Query: 141 VLLHTSHETKWIDA-------------------------------RNSAILYLLYGCGLR 169
                  + +  DA                               R+ AIL +LY  G+R
Sbjct: 129 AEQRAGPDAE-ADAGAIGVPEDAREDAGAANAAQDVDTISLARRLRDRAILEVLYATGIR 187

Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY--YDLCPFDLNLNIQL 227
           + E ++L   +I   ++ + + GKG+K R VP+     +A+ ++  +    F    +   
Sbjct: 188 VGELVALETDDIAWVRAVIHVIGKGNKERTVPIGQPALRAVEQWLRHGRPAFQTGASGSA 247

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
            +F G+RG+ ++P   +R +    R L        H LRHS ATHLL  G DLRS+Q IL
Sbjct: 248 -IFLGVRGRRIDPREVRRVVYAATRDLPDAPRLGPHGLRHSAATHLLEGGADLRSVQEIL 306

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           GH  L+TTQ+YT+V+ +     +   YD+ HP
Sbjct: 307 GHATLATTQLYTHVSIER----LRATYDRAHP 334


>gi|23335386|ref|ZP_00120622.1| COG0582: Integrase [Bifidobacterium longum DJO10A]
 gi|189439114|ref|YP_001954195.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum
           DJO10A]
 gi|317482492|ref|ZP_07941508.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689440|ref|YP_004209174.1| tyrosine recombinase [Bifidobacterium longum subsp. infantis 157F]
 gi|254799326|sp|B3DQV1|XERC_BIFLD RecName: Full=Tyrosine recombinase xerC
 gi|189427549|gb|ACD97697.1| Integrase [Bifidobacterium longum DJO10A]
 gi|316916044|gb|EFV37450.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320460776|dbj|BAJ71396.1| tyrosine recombinase [Bifidobacterium longum subsp. infantis 157F]
          Length = 355

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 144/337 (42%), Gaps = 62/337 (18%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +++  L+  RGLS  TL++Y  D    L        E   +  + +++  ++R++++   
Sbjct: 12  SFVSYLKSNRGLSANTLKAYRADLTACLHLF-----ELRGVTDLNEITLDDLRSWMAVE- 65

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           ++     S+ R    ++ F  +  +  +TT      +      ++LP  L E QA  L+D
Sbjct: 66  SRDHARSSMARKTVAVRGFFAWAYEHGLTTTDPAATLMTPSIPSTLPAVLTESQAEQLLD 125

Query: 140 NVLLHTSHETKWID---------------------------------------------- 153
            V  H     ++ D                                              
Sbjct: 126 -VAEHAVATNQYKDDGGAAAAPGSGKAAGKTADKSADTVNRSEAPARADKRDNARVTAES 184

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            RN+AIL LLY  G+R++E +S+   +I     T+++ GKG+K R+VP     ++A+  +
Sbjct: 185 QRNAAILELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRALETW 244

Query: 214 YD--------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            +             +       LF G RG  ++  + +  + +  R  G+P   + H L
Sbjct: 245 LEQGRPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVP-DISPHAL 303

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           RHS ATH+L  G DLR +Q +LGH  L TTQ YT+V+
Sbjct: 304 RHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVS 340


>gi|256832233|ref|YP_003160960.1| integrase family protein [Jonesia denitrificans DSM 20603]
 gi|256685764|gb|ACV08657.1| integrase family protein [Jonesia denitrificans DSM 20603]
          Length = 333

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 125/259 (48%), Gaps = 15/259 (5%)

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           E+R +++   TQ +   ++ R  +  + F  +L +R I  +     +      ++LP  L
Sbjct: 79  ELREWLAHSLTQNLSRSTIARRGASARQFFAWLVERGIRHDDPSKRLTTPTPHSALPHVL 138

Query: 130 NE---KQALTLVDNVLL--HTSHETKWIDARNS---AILYLLYGCGLRISEALSLTPQNI 181
                KQ L  V+ V L   T   T+   AR     A + L Y  GLRI+E +SL   +I
Sbjct: 139 TVAQVKQLLAAVERVYLPETTDTNTELSRARTDRLRAAVELTYSSGLRIAELVSLNVGDI 198

Query: 182 MDDQSTLRIQGKGDKIRIVPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
             +Q  +R+ GKG+K R VPL LP++ +A+  +       +    +  LF G+RG   N 
Sbjct: 199 DHEQRVIRVTGKGNKQRRVPLGLPAL-QALERWIAESRPIMQSTSEEALFLGVRGGRWNA 257

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              +  + +   +  L +    H LRH+ ATHLL  G DLRS+Q ILGH  L TTQ YT+
Sbjct: 258 RQVRDELNKAALHADLDV-VRPHDLRHTTATHLLEGGADLRSVQEILGHSSLRTTQRYTH 316

Query: 301 VNSKNGGDWMMEIYDQTHP 319
           V        + + Y   HP
Sbjct: 317 VTMTR----LRDTYAHAHP 331


>gi|187477407|ref|YP_785431.1| site-specific tyrosine recombinase XerD [Bordetella avium 197N]
 gi|115421993|emb|CAJ48515.1| tyrosine recombinase [Bordetella avium 197N]
          Length = 314

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 142/300 (47%), Gaps = 14/300 (4%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           +  L +E GL+  TL +Y  D   F  +L   T +  + Q + + S  +I A+ +    Q
Sbjct: 25  IDALWLEDGLAANTLAAYRRDLSAFARWLQ-QTGQAASGQ-LCEASGGDIEAWFAVLH-Q 81

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                +  R L+ ++ F  +  + K T     L +   ++   +P+ L+E Q   L+   
Sbjct: 82  DSRPATANRRLATLRRFYAWALREKRTGTDPCLKLAAARQPLRVPKTLSEAQVEALLGAP 141

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV 200
            L T         R+ A+L  LY  GLR+SE + L   ++      +R+ QGKG K R+V
Sbjct: 142 DLGTPRGL-----RDRAMLETLYATGLRVSELVELQTLDVSLSDGVVRVVQGKGGKDRLV 196

Query: 201 PLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+       +  Y +   P  +       LF   R + ++   F + +++  +   +   
Sbjct: 197 PMGAEAAHWLQRYLNQARPVLVGARQSDALFVTGRAQAMSRQAFWQLVKKYAQRADVHAP 256

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + H LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++   HP
Sbjct: 257 LSPHVLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER----LKALHAAHHP 312


>gi|309809264|ref|ZP_07703133.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN
           2503V10-D]
 gi|308170377|gb|EFO72401.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN
           2503V10-D]
          Length = 307

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/321 (28%), Positives = 152/321 (47%), Gaps = 42/321 (13%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           + LK   N+L+N   ER  S  T ++Y  D  +      F+ E    I  I+ LS  +I 
Sbjct: 6   DFLKLYYNYLKN---ERNYSINTCKAYMDDLSEAR---TFFVENGGFIDWIK-LSSRDIE 58

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALN 130
            FI     +K    +  R +S ++SF ++L KR I       ++++R   K   LP  L 
Sbjct: 59  IFIQYLAQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGEHKK--LPEFLY 116

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             + + ++ ++       T  +  RN A+L L Y  G+R+SE  +L  + I  + + + +
Sbjct: 117 NDEMVKVLKSI-----STTTPLGLRNMALLELFYATGMRVSEIANLKLEQIDFELNLILV 171

Query: 191 QGKGDKIRIVP------------LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
            GKG+K R V             L+ + +K +L   D     LN N      RG+     
Sbjct: 172 HGKGNKDRYVAFGEEAKTALNNYLVEARKKILLHKTDYGYVFLNSNGNRITSRGL----- 226

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                +  I+ +    G+  S   H LRH+FAT +L+NG DLR++Q +LGH  +STTQIY
Sbjct: 227 -----EYIIKNIFLNAGVSASVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIY 281

Query: 299 TNVNSKNGGDWMMEIYDQTHP 319
           T+V  ++    + +IY +  P
Sbjct: 282 THVTKQH----LCDIYHKYFP 298


>gi|257125886|ref|YP_003164000.1| integrase family protein [Leptotrichia buccalis C-1013-b]
 gi|257049825|gb|ACV39009.1| integrase family protein [Leptotrichia buccalis C-1013-b]
          Length = 356

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 119/239 (49%), Gaps = 13/239 (5%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +  RS+ R +S +++F KYL++  +  T +++ ++M   +K   LP  LN         N
Sbjct: 125 VSRRSINRKISALRTFFKYLQEINVIETNKASYISMPKFEKE--LPNVLNRDDL-----N 177

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            L H  +  K    R+  I+ LLY  GLR  E ++L+   I  ++  +R+ GKG+K R+ 
Sbjct: 178 KLRHVINTEKITGIRDRLIIELLYSSGLRSIELINLSEFMIDIEEREIRVIGKGEKERVT 237

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
               + +K +++Y D          +  L    +GK L     +R I       G+    
Sbjct: 238 FFSENAKKWLIKYIDEKKKQYENYTREVLIVNSKGKKLTTRSLRRLISGHVHEAGIEKEI 297

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           T H  RHSFA  LL+NG +++ +Q ++GH  ++ TQ+YT+VN      ++ +IY   H 
Sbjct: 298 TPHVFRHSFAMELLNNGVEIQYLQELMGHSSIAATQVYTHVNK----TFLKDIYMNAHS 352


>gi|309804146|ref|ZP_07698224.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV
           11V1-d]
 gi|315653524|ref|ZP_07906445.1| tyrosine recombinase XerC [Lactobacillus iners ATCC 55195]
 gi|308163729|gb|EFO65998.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV
           11V1-d]
 gi|315489215|gb|EFU78856.1| tyrosine recombinase XerC [Lactobacillus iners ATCC 55195]
          Length = 307

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 149/311 (47%), Gaps = 22/311 (7%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           + LK   N+L+N   ER  S  T ++Y  D  +      F+ E    I  I+ LS  +I 
Sbjct: 6   DFLKLYYNYLKN---ERNYSINTCKAYMDDLSEAR---TFFVENGGFIDWIK-LSSRDIE 58

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALN 130
            FI     +K    +  R +S ++SF ++L KR I       ++++R   K   LP  L 
Sbjct: 59  IFIQYLAQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGEHKK--LPEFLY 116

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             + + ++ ++       T  +  RN A+L L Y  G+R+SE  +L  + I  + + + +
Sbjct: 117 NDEMVKVLKSI-----STTTPLGLRNMALLELFYATGMRVSEIANLKLEQIDFELNLILV 171

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIR 248
            GKG+K R V      + A+  Y       L L+      +F    G  +     +  I+
Sbjct: 172 HGKGNKDRYVAFGEEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNRITSRGLEYIIK 231

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            +    G+  S   H LRH+FAT +L+NG DLR++Q +LGH  +STTQIYT+V  ++   
Sbjct: 232 NIFLNAGVSASVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQH--- 288

Query: 309 WMMEIYDQTHP 319
            + +IY +  P
Sbjct: 289 -LCDIYHKYFP 298


>gi|291542679|emb|CBL15789.1| Site-specific recombinase XerD [Ruminococcus bromii L2-63]
          Length = 327

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 145/303 (47%), Gaps = 35/303 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAF----------YTEEKIT------IQTIR-QLSYTEI 71
           + +SK T+  Y  D R F  FL            + E KI       I+T+  +L+Y  +
Sbjct: 24  KNMSKKTVDEYFIDLRTFFRFLKVMRGLVPDGTEFDEIKIDDVDLDLIKTVNLELAYDYM 83

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN-ILNMRNLKKSNSLPRALN 130
             F+ + R  K   R+  R  S +K F KY+   K   ++N +  + + K   +LP+ L 
Sbjct: 84  N-FLYRDRNNKSASRA--RKCSSLKGFFKYITNNKHLLDTNPVEQLESPKNKKALPKYLT 140

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            +Q++ L++ V  +          R+  IL L   CGLR+SE   L   +I  D  T+R+
Sbjct: 141 LEQSIELLNAVDGNNKQ-------RDYCILTLFLNCGLRVSEMAGLNYNDIHSD-GTMRV 192

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG+K RIV L  +   A  EY  + P D  +  +  LF     + ++    Q  + + 
Sbjct: 193 VGKGNKERIVYLNSACIDAYNEYMKVRPID-EVKDKKALFISRNHRRMSVKTIQAMVYKY 251

Query: 251 RRYLGL-PLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNS---KN 305
              +GL     + H LRH+ AT +   GG D+R ++ +LGH  L TT+IYT+++S   KN
Sbjct: 252 LEKIGLDSQGYSCHKLRHTAATLMYQQGGVDVRVLKEVLGHENLGTTEIYTHLSSEQMKN 311

Query: 306 GGD 308
             D
Sbjct: 312 AAD 314


>gi|260760651|ref|ZP_05872994.1| integrase/recombinase xerD [Brucella abortus bv. 2 str. 86/8/59]
 gi|260671083|gb|EEX57904.1| integrase/recombinase xerD [Brucella abortus bv. 2 str. 86/8/59]
          Length = 309

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 133/302 (44%), Gaps = 38/302 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N+L+ +  ERG ++ TL+SY  D       LA         +T        IR  +   
Sbjct: 10  ENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAET------GHIRMTLDTM 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R LS ++ F ++L       +     +   KK   LP+ ++ +    L+
Sbjct: 64  AAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGKLL 123

Query: 139 DNVLLHTSHET---KWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           D   L  +      + I A R  A+L  LY  GLR+SE + L       D   L ++GKG
Sbjct: 124 DRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKG 183

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------- 243
            K R+VPL    R A+ ++       L L   LP      G   NP +F           
Sbjct: 184 SKDRMVPLSRKARDALQKF-------LTLRDSLP------GSDDNPWLFPTFSESGHLAR 230

Query: 244 QRYIRQLRRYLGLPLSTT----AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           Q + R+L+               H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT
Sbjct: 231 QVFARELKGLAARAGLAASSASPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYT 290

Query: 300 NV 301
           +V
Sbjct: 291 HV 292


>gi|312170746|emb|CBX79008.1| Tyrosine recombinase xerC [Erwinia amylovora ATCC BAA-2158]
          Length = 302

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 148/307 (48%), Gaps = 19/307 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL   + +L+ L++ER LS LT  +Y       ++ L     +++ +    +L    +R+
Sbjct: 7   LLTATEGFLRYLKVERQLSPLTQVNYRRQLSAIIVLL-----DELKVVEWARLDAALVRS 61

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             ++     +   SL   LS ++SFL +L  +     +    +   + +  LP+ ++  +
Sbjct: 62  LAARSTRSGLKPASLALRLSALRSFLDWLVSQGAIKANPAKGVATPRAARHLPKNIDVDE 121

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++  L         +  R+ A+L  +YG GLR+SE + +   ++      + + GK
Sbjct: 122 VNRLLEIDL------NDPLAVRDRAMLEAMYGAGLRLSELVGIDLGHLDLASGEVWVIGK 175

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K R +P+  +    +  +  +   F+   N    LF   +GK ++    Q+   +   
Sbjct: 176 GSKERRLPMGRTAVHWVENWLAMRELFEPQDN---ALFLSNQGKRISTRNVQKRFAEWGV 232

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+      H LRHSFATH+L + GDLR++Q +LGH  L+TTQIYT+++ ++    +  
Sbjct: 233 KQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----LAS 288

Query: 313 IYDQTHP 319
           +YD  HP
Sbjct: 289 VYDAAHP 295


>gi|237816384|ref|ZP_04595377.1| tyrosine recombinase XerD [Brucella abortus str. 2308 A]
 gi|260546138|ref|ZP_05821878.1| tyrosine recombinase xerD [Brucella abortus NCTC 8038]
 gi|260755704|ref|ZP_05868052.1| integrase/recombinase xerD [Brucella abortus bv. 6 str. 870]
 gi|260758929|ref|ZP_05871277.1| integrase/recombinase xerD [Brucella abortus bv. 4 str. 292]
 gi|260884731|ref|ZP_05896345.1| tyrosine recombinase xerD [Brucella abortus bv. 9 str. C68]
 gi|297247261|ref|ZP_06930979.1| tyrosine recombinase XerD [Brucella abortus bv. 5 str. B3196]
 gi|88952695|sp|Q2YR40|XERD_BRUA2 RecName: Full=Tyrosine recombinase xerD
 gi|90140493|sp|P0C122|XERD_BRUAB RecName: Full=Tyrosine recombinase xerD
 gi|237788451|gb|EEP62666.1| tyrosine recombinase XerD [Brucella abortus str. 2308 A]
 gi|260096245|gb|EEW80121.1| tyrosine recombinase xerD [Brucella abortus NCTC 8038]
 gi|260669247|gb|EEX56187.1| integrase/recombinase xerD [Brucella abortus bv. 4 str. 292]
 gi|260675812|gb|EEX62633.1| integrase/recombinase xerD [Brucella abortus bv. 6 str. 870]
 gi|260874259|gb|EEX81328.1| tyrosine recombinase xerD [Brucella abortus bv. 9 str. C68]
 gi|297174430|gb|EFH33777.1| tyrosine recombinase XerD [Brucella abortus bv. 5 str. B3196]
          Length = 309

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 133/302 (44%), Gaps = 38/302 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N+L+ +  ERG ++ TL+SY  D       LA         +T        IR  +   
Sbjct: 10  ENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAET------GHIRMTLDTM 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R LS ++ F ++L       +     +   KK   LP+ ++ +    L+
Sbjct: 64  AAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGKLL 123

Query: 139 DNVLLHTSHET---KWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           D   L  +      + I A R  A+L  LY  GLR+SE + L       D   L ++GKG
Sbjct: 124 DRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKG 183

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------- 243
            K R+VPL    R A+ ++       L L   LP      G   NP +F           
Sbjct: 184 SKDRMVPLSRKARDALQKF-------LTLRDSLP------GSDDNPWLFPAFSESGHLAR 230

Query: 244 QRYIRQLRRYLGLPLSTT----AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           Q + R+L+               H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT
Sbjct: 231 QVFARELKGLAARAGLAASSASPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYT 290

Query: 300 NV 301
           +V
Sbjct: 291 HV 292


>gi|312977299|ref|ZP_07789047.1| integrase/recombinase XerC [Lactobacillus crispatus CTV-05]
 gi|310895730|gb|EFQ44796.1| integrase/recombinase XerC [Lactobacillus crispatus CTV-05]
          Length = 270

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 115/233 (49%), Gaps = 6/233 (2%)

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +I+ ++     +K+   S  R +S + SF  +L +RK+        +   +    LP+  
Sbjct: 24  DIQVYLQHLAERKLARSSQLRKMSSLHSFYHFLTRRKLVAIDPTQGITLRRGEKKLPQFF 83

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            + +   + D++        K +  RN A+  L Y  G+R+SE  +LT   +  D  T+ 
Sbjct: 84  YQPELKQVFDSL-----KGNKPLTMRNLAMFELFYATGMRVSEVSNLTLNQLDLDLQTIL 138

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           + GKG+K R V      +K+++ Y +   P  L  + +  +F   +G  +     +  ++
Sbjct: 139 VHGKGNKDRYVAFDDKTKKSLIAYLENARPLLLKNDDEQHVFLNNQGTGITSRGIETVMQ 198

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +     G+      H LRHSFAT +L+NG DLRS+Q +LGH  LS TQIYT+V
Sbjct: 199 KTFNQAGISGKVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHV 251


>gi|53715486|ref|YP_101478.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60683459|ref|YP_213603.1| putative site-specific recombinase [Bacteroides fragilis NCTC 9343]
 gi|265767527|ref|ZP_06095193.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_16]
 gi|52218351|dbj|BAD50944.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60494893|emb|CAH09700.1| putative site-specific recombinase [Bacteroides fragilis NCTC 9343]
 gi|263252832|gb|EEZ24344.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_16]
 gi|301164943|emb|CBW24504.1| putative site-specific recombinase [Bacteroides fragilis 638R]
          Length = 293

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 144/300 (48%), Gaps = 13/300 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L  ER  S+ T+ +Y  D  Q    L  + +E++      ++    +R +I    
Sbjct: 5   SFLDYLRYERNYSEKTVLAYGEDISQ----LREFAQERMEKFDPAEVKPELVREWIVSLM 60

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q     S+ R LS ++SF KYL ++   +   +  +   K    LP  L E +   L+D
Sbjct: 61  DQGYTSTSVNRKLSSLRSFYKYLLRQGEVSVDPLRKITGPKNKKPLPSFLKESEMNKLLD 120

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           +    T     +   R+  I+ + Y  G+R+SE + L  +++    S L++ GK +K R+
Sbjct: 121 D----TDFGEGFKGCRDRLIIEMFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQRL 176

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +P    +++ +LEY D+    ++        R    +     V+    R L + + L   
Sbjct: 177 IPFGDELKETMLEYVDIRNEMISGRSDAFFVRENGERLYKNLVYNLVKRNLSKVVTLK-K 235

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + H LRH+FAT +L+N  +L +++ +LGH  L+TT+IYT+   +     + ++Y Q HP
Sbjct: 236 RSPHVLRHTFATTMLNNDAELGAVKELLGHSSLATTEIYTHTTFEE----LKKVYKQAHP 291


>gi|312871428|ref|ZP_07731523.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           3008A-a]
 gi|311093081|gb|EFQ51430.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           3008A-a]
          Length = 307

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 149/311 (47%), Gaps = 22/311 (7%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           + LK   N+L+N   ER  S  T ++Y  D  +      F+ E    I  I+ LS  +I 
Sbjct: 6   DFLKLYYNYLKN---ERNYSINTCKAYMDDLSEAR---TFFVENGGFIDWIK-LSSRDIE 58

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALN 130
            FI     +K    +  R +S ++SF ++L KR I       ++++R   K   LP  L 
Sbjct: 59  IFIQYLAQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGDHKK--LPEFLY 116

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             + + ++ ++       T  +  RN A+L L Y  G+R+SE  +L  + I  + + + +
Sbjct: 117 NDEMVKVLKSI-----STTTPLGLRNMALLELFYATGMRVSEIANLKLEQIDFELNLILV 171

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIR 248
            GKG+K R V      + A+  Y       L L+      +F    G  +     +  I+
Sbjct: 172 HGKGNKDRYVAFGEEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNRITSRGLEYIIK 231

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            +    G+  S   H LRH+FAT +L+NG DLR++Q +LGH  +STTQIYT+V  ++   
Sbjct: 232 NIFLNAGISASVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQH--- 288

Query: 309 WMMEIYDQTHP 319
            + +IY +  P
Sbjct: 289 -LCDIYHKYFP 298


>gi|255534430|ref|YP_003094801.1| Integrase, site-specific recombinase [Flavobacteriaceae bacterium
           3519-10]
 gi|255340626|gb|ACU06739.1| Integrase, site-specific recombinase [Flavobacteriaceae bacterium
           3519-10]
          Length = 296

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 146/316 (46%), Gaps = 37/316 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE-----IRAFI 75
           +L+ + +E+  S  TL SY  D   F +FL         ++T    +Y E     IR F+
Sbjct: 5   FLEYIAVEKRYSPHTLTSYRRDLEDFSVFL---------LRTEAHHNYVEVDKKIIRNFM 55

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQ 133
           +    + I  RS+ R LS ++SF  +L K      S + N++ LK      +P + +E  
Sbjct: 56  AALGEKAIAKRSINRKLSTLRSFYLFLLKIGEVKTSPLANIQTLKFYAEKQVPFSPDEMN 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
            L   +   L T       +     I+  LY  G+R +E   L   ++   +  L+I GK
Sbjct: 116 DLQKEEFQPLKT-------NFLKELIIETLYQTGMRRAELTGLLLDHVDLGKKELKITGK 168

Query: 194 GDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G+K RIVP+   +   + +Y +   P       Q+  F   +GK LN       +     
Sbjct: 169 GNKQRIVPVSDDLCAQLEQYLEFRKPLK---EYQMYFFVSAKGKKLNDKFVYSAVNT--- 222

Query: 253 YLGLPLST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           YL L  S    + H LRHSFATH+L  G ++  ++ ++GH  L++TQ+YT  N     + 
Sbjct: 223 YLSLVTSKKKKSPHILRHSFATHVLEEGAEISKVKLLMGHKSLASTQVYTGTNI----EQ 278

Query: 310 MMEIYDQTHPSITQKD 325
           + ++++  HP   QK+
Sbjct: 279 LKKVFNNAHPRAIQKE 294


>gi|254696281|ref|ZP_05158109.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 2
           str. 86/8/59]
          Length = 307

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 133/302 (44%), Gaps = 38/302 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N+L+ +  ERG ++ TL+SY  D       LA         +T        IR  +   
Sbjct: 8   ENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAET------GHIRMTLDTM 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R LS ++ F ++L       +     +   KK   LP+ ++ +    L+
Sbjct: 62  AAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGKLL 121

Query: 139 DNVLLHTSHET---KWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           D   L  +      + I A R  A+L  LY  GLR+SE + L       D   L ++GKG
Sbjct: 122 DRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKG 181

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------- 243
            K R+VPL    R A+ ++       L L   LP      G   NP +F           
Sbjct: 182 SKDRMVPLSRKARDALQKF-------LTLRDSLP------GSDDNPWLFPTFSESGHLAR 228

Query: 244 QRYIRQLRRYLGLPLSTT----AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           Q + R+L+               H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT
Sbjct: 229 QVFARELKGLAARAGLAASSASPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYT 288

Query: 300 NV 301
           +V
Sbjct: 289 HV 290


>gi|62290876|ref|YP_222669.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 1
           str. 9-941]
 gi|82700788|ref|YP_415362.1| site-specific tyrosine recombinase XerD [Brucella melitensis biovar
           Abortus 2308]
 gi|189025091|ref|YP_001935859.1| site-specific tyrosine recombinase XerD [Brucella abortus S19]
 gi|254690165|ref|ZP_05153419.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 6
           str. 870]
 gi|254694656|ref|ZP_05156484.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 3
           str. Tulya]
 gi|254731198|ref|ZP_05189776.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 4
           str. 292]
 gi|256258419|ref|ZP_05463955.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 9
           str. C68]
 gi|261214980|ref|ZP_05929261.1| integrase/recombinase xerD [Brucella abortus bv. 3 str. Tulya]
 gi|62197008|gb|AAX75308.1| XerD, integrase/recombinase [Brucella abortus bv. 1 str. 9-941]
 gi|82616889|emb|CAJ11988.1| Phage integrase:Phage integrase, N-terminal SAM-like [Brucella
           melitensis biovar Abortus 2308]
 gi|189020663|gb|ACD73385.1| Phage integrase [Brucella abortus S19]
 gi|260916587|gb|EEX83448.1| integrase/recombinase xerD [Brucella abortus bv. 3 str. Tulya]
          Length = 307

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 133/302 (44%), Gaps = 38/302 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N+L+ +  ERG ++ TL+SY  D       LA         +T        IR  +   
Sbjct: 8   ENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAET------GHIRMTLDTM 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R LS ++ F ++L       +     +   KK   LP+ ++ +    L+
Sbjct: 62  AAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGKLL 121

Query: 139 DNVLLHTSHET---KWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           D   L  +      + I A R  A+L  LY  GLR+SE + L       D   L ++GKG
Sbjct: 122 DRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKG 181

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------- 243
            K R+VPL    R A+ ++       L L   LP      G   NP +F           
Sbjct: 182 SKDRMVPLSRKARDALQKF-------LTLRDSLP------GSDDNPWLFPAFSESGHLAR 228

Query: 244 QRYIRQLRRYLGLPLSTT----AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           Q + R+L+               H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT
Sbjct: 229 QVFARELKGLAARAGLAASSASPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYT 288

Query: 300 NV 301
           +V
Sbjct: 289 HV 290


>gi|169828358|ref|YP_001698516.1| site-specific tyrosine recombinase XerC [Lysinibacillus sphaericus
           C3-41]
 gi|168992846|gb|ACA40386.1| Tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41]
          Length = 320

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 151/320 (47%), Gaps = 33/320 (10%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE---- 56
           M+   LP+I+        +++L  L   +G S+ T + YE D   F  F     E+    
Sbjct: 1   MQKTKLPKIM--------KDFLVYLTTIKGKSQRTRKEYEYDLSLFFRFHTAVQEDLNIE 52

Query: 57  --------KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS--LSGIKSFLKYLK-KR 105
                    I+I+ IR+++  ++  F+     Q+ G+ +  R+  ++ +KSF KYLK KR
Sbjct: 53  NLAAIDIATISIEEIREITLEDLYYFMEYCEVQR-GNSAASRARKVATLKSFFKYLKGKR 111

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
           ++  E+    + + K     P  +N ++A   +D + ++ +        RN  ++     
Sbjct: 112 RLIEENPAEELESPKIGRKRPIYMNFREATQFIDGIPVNQA------SPRNYCMMMFFLN 165

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
            G+R++E   L   +I      L + GKG+K R V L  S  +A+ +Y +        N 
Sbjct: 166 LGIRVTELCQLNITSIQGRH--LTVVGKGNKERTVYLNDSCMQALADYENSGKTPYKGNG 223

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQ 284
             PLF   +G         + ++++ +  GL     T H LRH+ AT +   G D+RS+Q
Sbjct: 224 DEPLFVSQKGTRFTRQTVAKIVKRINQQSGLQKERLTPHKLRHTSATMMYKAGADIRSLQ 283

Query: 285 SILGHFRLSTTQIYTNVNSK 304
            ILGH  ++TTQIYT++  +
Sbjct: 284 HILGHSSVATTQIYTHIEDE 303


>gi|241761139|ref|ZP_04759228.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241374758|gb|EER64219.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 307

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 122/238 (51%), Gaps = 15/238 (6%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++ R  + +K F ++L +  + T+    ++ +   S +LP+ L   +   L   V L   
Sbjct: 75  TVARKSAALKHFYRFLLEEGMRTDDPSSSLPHAGISRNLPKILTTAEVERLF--VTLQQR 132

Query: 147 HETKWIDA--RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           +E     +  R  A++ LLYG GLR SE +SL  Q  +  Q  L ++GKG + R+VP+  
Sbjct: 133 YERAATPSTLRLMALVELLYGSGLRASELVSLPKQAFIRKQPFLILKGKGGRERLVPISD 192

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS-TTAH 263
               A+  +    P        L LF   +G      ++Q  I++L     LP    + H
Sbjct: 193 RATDAVAAWLVHVP-----EKSLWLFPSGKGHISRIRLYQ-LIKELAVEADLPRERVSPH 246

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            LRH+FATHLL  G DLR +Q +LGH  +STTQIYT+V+S+     ++E+ +  HP +
Sbjct: 247 VLRHAFATHLLEGGADLRVLQLLLGHADISTTQIYTHVDSQK----LVELVNSRHPLV 300


>gi|312875471|ref|ZP_07735474.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           2053A-b]
 gi|325912823|ref|ZP_08175201.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 60-B]
 gi|311088982|gb|EFQ47423.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           2053A-b]
 gi|325477816|gb|EGC80950.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 60-B]
          Length = 307

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/321 (28%), Positives = 152/321 (47%), Gaps = 42/321 (13%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           + LK   N+L+N   ER  S  T ++Y  D  +      F+ E    I  I+ LS  +I 
Sbjct: 6   DFLKLYYNYLKN---ERNYSINTCKAYMDDLSEAR---TFFVENGGFIDWIK-LSSRDIE 58

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALN 130
            FI     +K    +  R +S ++SF ++L KR I       ++++R   K   LP  L 
Sbjct: 59  IFIQYLAQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGDHKK--LPEFLY 116

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             + + ++ ++       T  +  RN A+L L Y  G+R+SE  +L  + I  + + + +
Sbjct: 117 NDEMVKVLKSI-----STTTPLGLRNMALLELFYATGMRVSEIANLKLEQIDFELNLILV 171

Query: 191 QGKGDKIRIVP------------LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
            GKG+K R V             L+ + +K +L   D     LN N      RG+     
Sbjct: 172 HGKGNKDRYVAFGEEAKTALNNYLVEARKKILLHKTDYGYVFLNSNGNRITSRGL----- 226

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                +  I+ +    G+  S   H LRH+FAT +L+NG DLR++Q +LGH  +STTQIY
Sbjct: 227 -----EYIIKNIFLNAGVSASVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIY 281

Query: 299 TNVNSKNGGDWMMEIYDQTHP 319
           T+V  ++    + +IY +  P
Sbjct: 282 THVTKQH----LCDIYHKYFP 298


>gi|225077168|ref|ZP_03720367.1| hypothetical protein NEIFLAOT_02223 [Neisseria flavescens
           NRL30031/H210]
 gi|224951516|gb|EEG32725.1| hypothetical protein NEIFLAOT_02223 [Neisseria flavescens
           NRL30031/H210]
          Length = 292

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 138/283 (48%), Gaps = 20/283 (7%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ--TIRQLSYTEIRAFISKRR 79
           L++L ++  LS  TLQSY  D  +    LA   ++ ++     +    Y E     S+  
Sbjct: 11  LESLWLQDRLSHNTLQSYRRDLVKVAARLAEGGQDWLSADEFALSDAVYAEGEKSTSQ-- 68

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                     R+LS  K    +L++     ++    ++  K    LP  + E Q   L+ 
Sbjct: 69  ---------ARALSACKRMYVWLEETGQRADNPTRFLKAPKSERKLPTLITEAQIDALLA 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              + T H       R+ A+L ++Y  GLR++EA+ LT  +I   + ++R  GKGDK+R+
Sbjct: 120 APDVETPH-----GLRDKALLEVMYATGLRVTEAVKLTLSDIDLHRGSIRTIGKGDKLRL 174

Query: 200 VPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VPL       +  Y +   P  L   I   +F   +   ++  +    +++     G+  
Sbjct: 175 VPLGQEAAYWVERYCNESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKEYAEAAGIA- 233

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           S + H LRH+FATHL+++G DLRS+Q +LGH  ++TTQIYT+V
Sbjct: 234 SLSPHGLRHAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHV 276


>gi|154150265|ref|YP_001403883.1| phage integrase family protein [Candidatus Methanoregula boonei
           6A8]
 gi|153998817|gb|ABS55240.1| phage integrase family protein [Methanoregula boonei 6A8]
          Length = 306

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 145/323 (44%), Gaps = 48/323 (14%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQF--LIFLAFYTEEKITIQTIRQLS--- 67
           + LK  +N+L+     R  S  TL SYE   R F   ++L  +TE    +   + L    
Sbjct: 8   DWLKSYRNYLR----MRNYSSRTLDSYEQVIRHFGYYVWLRRHTEVTKLVFFWKDLENAR 63

Query: 68  -----------YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
                       T+  +F+S  RT K   ++  R +S + SF ++L  +     + +  +
Sbjct: 64  LDTSVDVPPSMITDFLSFVSTMRTYK--PKTFHRIISTLSSFYRFLSVQGAVVANPLAGI 121

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              +      + L   Q L L+D++           D R+  I+  +Y  G+R+SE  ++
Sbjct: 122 ERPRIKQQEVKYLKHNQVLRLIDSIE----------DPRDKLIVRTIYSTGVRVSELCNM 171

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
             ++I  D+ T+RI+GKGDKIRIV +       I ++       +   I  PLF G +GK
Sbjct: 172 NVEDIDFDEHTIRIRGKGDKIRIVFVDDETLAGIQKF-------VGNRIAGPLFIGQQGK 224

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            ++P   Q   +        P   T H +RHS+A+ L     +LR +Q  LGH  + TT+
Sbjct: 225 HISPRAIQHIFKHY-----APAGITPHKIRHSYASELYRRSKNLRVVQENLGHTSIKTTE 279

Query: 297 IYTNVNSKNGGDWMMEIYDQTHP 319
           +Y + +     D   ++Y Q  P
Sbjct: 280 VYLHTDI----DERRQVYQQFFP 298


>gi|126462249|ref|YP_001043363.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
 gi|126103913|gb|ABN76591.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 311

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 128/279 (45%), Gaps = 30/279 (10%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97
           +Y  D + +  +L   +E+ +T       +   + A+++    Q +   +  R LS I+ 
Sbjct: 30  AYGRDLKDYATWLGRRSEDFLTA------TRDTVEAYLTFCEAQGLSSATRARRLSSIRQ 83

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
             ++  +     ++  + +    +S  LP+ L  ++   L++            I  RN 
Sbjct: 84  LYRFAHEEGWRADNPAIRISGPGRSKRLPKTLEIEEVDWLLEAARDKGRRAEDQI--RNR 141

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            +L LLY  G+R+SE + L           + ++GKG K R+VPL P   +A+ ++    
Sbjct: 142 CLLELLYATGMRVSEMVGLPVAAARGSPRMILVRGKGGKERMVPLSPPACEALADW---- 197

Query: 218 PFDLNLNIQLPLFRGIRGKP----LNPG----------VFQRYIRQLRRYLGL-PLSTTA 262
              L             G+P    L PG           F   ++Q+    G+ P   T 
Sbjct: 198 ---LRARDAAEAQGQKAGRPASRFLFPGSGAAGHLTREYFYVLVKQIAVLAGVDPAKVTP 254

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           HTLRH+FATHLL+ G DLR IQ++LGH  LSTT+IYT+V
Sbjct: 255 HTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHV 293


>gi|325266806|ref|ZP_08133478.1| tyrosine recombinase XerD [Kingella denitrificans ATCC 33394]
 gi|324981738|gb|EGC17378.1| tyrosine recombinase XerD [Kingella denitrificans ATCC 33394]
          Length = 289

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 152/310 (49%), Gaps = 40/310 (12%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L++L ++  L+  TL++Y  D  +    LA    +       RQL+   + A   +  T
Sbjct: 7   FLEHLWLQERLAHNTLEAYRHDLHKVAERLAAAQTDWQHADN-RQLA-DAVYAADEQPST 64

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q        R+LS +K + +YL   +   ++   +++  K   SLP+ ++E Q   L+  
Sbjct: 65  QS-------RTLSAVKKWYQYLNDTQHRHDNPSRDLKAAKIPRSLPQPVSEAQIDALLAA 117

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
               T H       R+ A+L L+Y  GLR+SEA+ L+   +   +  +   GKG+K RIV
Sbjct: 118 PDTDTLHGL-----RDKALLELMYATGLRVSEAVKLSLNELDLTRGMVNTIGKGNKQRIV 172

Query: 201 PLLPSVRKAILEYY-----------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           PL   V    LE Y             C +      ++ + R +  +     V  +Y +Q
Sbjct: 173 PL-GEVAADWLERYLHTARPELLKGQACAYVFVSQKKVGISRQLAWQ-----VVAKYAQQ 226

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           +    GLP + + H LRH+FATHL+++G DLR +Q +LGH  L+TT+IYT+V +      
Sbjct: 227 V----GLP-ALSPHGLRHAFATHLVNHGADLRVVQLLLGHESLTTTEIYTHVANAR---- 277

Query: 310 MMEIYDQTHP 319
           + ++ +Q HP
Sbjct: 278 LKQVVEQYHP 287


>gi|213622284|ref|ZP_03375067.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 234

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 118/239 (49%), Gaps = 12/239 (5%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++      L+D 
Sbjct: 2   KGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDI 61

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            L         +  R+ A+L ++YG GLR+SE + L  +++  D   + + GKG K R +
Sbjct: 62  DL------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRL 115

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+  +    I  + DL    L  + +  LF    GK ++    Q+   +     GL    
Sbjct: 116 PIGRNAVTWIEHWLDLR--GLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHV 173

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
             H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  +YD  HP
Sbjct: 174 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 228


>gi|284992378|ref|YP_003410932.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284065623|gb|ADB76561.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 311

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 151/325 (46%), Gaps = 38/325 (11%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP +++  L      + ++L  +R LS+ T++ Y  D    L  L      ++       
Sbjct: 12  LPPVLAEAL----AGYEEHLRTQRDLSEHTVRGYVGDAVWLLDHLVRRGGTRVD-----D 62

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           L    +R+++++ RT+  G  +  R  +  +SF  +L++  +T E   L + + K   +L
Sbjct: 63  LDLATLRSWLAQGRTRGAGRATTARRAAAARSFTGWLRRAGLTAEDVGLRLVSPKAQRTL 122

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P  L   QA  +V++     +   + +  R++ +L LLY  G+R+SE + L   ++   +
Sbjct: 123 PDVLAPDQARVVVES----AAGAEEPVGLRDAVVLELLYASGIRVSELVGLDVDDVDRGR 178

Query: 186 STLRIQGKGDKIRIVPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
             LR+ GKG K R VP  +P+ R            D  L    P     R  P      +
Sbjct: 179 RLLRVLGKGRKERSVPYGVPAERA----------LDAWLTRGRPALATERSGPALLLGLR 228

Query: 245 RY---IRQLRRYLGLPLSTTA-------HTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
                 R++RR +   ++          H LRHS ATH+L  G DLRS+Q +LGH  L+T
Sbjct: 229 GGRLDAREVRRTVHAAVAAAPGAPDIGPHGLRHSAATHVLEGGADLRSVQELLGHASLAT 288

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHP 319
           TQIYT+V  +     +  ++ Q HP
Sbjct: 289 TQIYTHVTVER----LRAVHAQAHP 309


>gi|119719024|ref|YP_919519.1| phage integrase family protein [Thermofilum pendens Hrk 5]
 gi|119524144|gb|ABL77516.1| phage integrase family protein [Thermofilum pendens Hrk 5]
          Length = 295

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 135/276 (48%), Gaps = 30/276 (10%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           + R  S+ T++S++    +F+ FL          + + Q++  ++  F++  R +     
Sbjct: 25  VARNRSEKTIKSFKSILEEFVRFLG--------DRHVSQVTVYDVDFFLAHLRRKGWKKD 76

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S+  +   +K FL++L         NI      K+   LPR L  ++   +V+       
Sbjct: 77  SIYTAAVAVKRFLEFL-----GLGGNIAGFELPKREKRLPRYLEAEEVFRMVNAAE---- 127

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                 + R+  I+ LL+  GLR+SE +SL   ++  ++ TLR++GKG K R+V     V
Sbjct: 128 ------NLRDKLIVLLLFTTGLRVSELVSLRVSDVDLEKRTLRVRGKGSKERLVYFPDYV 181

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              +  Y         LN +  LF     + ++    +R +++L+   G+    T HTLR
Sbjct: 182 ADLLRSYMK------GLNSEW-LFPSETAEHIHYTTVERVLKRLKEKAGIEKKVTPHTLR 234

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           HSFAT  L+ G D+R IQ +LGH  L+TTQ+Y +V+
Sbjct: 235 HSFATLSLAAGLDIREIQELLGHSNLNTTQVYAHVS 270


>gi|42523751|ref|NP_969131.1| integrase/recombinase XerD [Bdellovibrio bacteriovorus HD100]
 gi|39575958|emb|CAE80124.1| integrase/recombinase XerD [Bdellovibrio bacteriovorus HD100]
          Length = 292

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 138/302 (45%), Gaps = 35/302 (11%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           LQN+   RG S+ T+ +Y  D       L  Y E + T +T+          F    +  
Sbjct: 13  LQNV---RGRSQNTVMAYRRD-------LELYLEYRKTGKTVP--------GFYEFMKKN 54

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
           K+  RS  R +S ++++ K+ + R +     +  +R  K    LP+ L  ++   L D  
Sbjct: 55  KLSTRSQARVISSLRTYFKFCETRGMKC-PELRELRPPKVKVGLPKVLTPQEFQQLFDAA 113

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKGDKIR 198
            +  + +T    ARN   L  LYG G R+SE + L   N++D   T   +++ GKG+K R
Sbjct: 114 EVPDAVKT----ARNQLTLLFLYGLGCRVSELIGL---NVVDFNQTDRWIKVLGKGNKER 166

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLP 257
           +VPL   + + +  Y       L       +    RG +P    V+ R++       G  
Sbjct: 167 LVPLTEKLAENLTVYLKEHRMALVKENSPSILINDRGHRPSRVDVW-RWLAAWSARAGFA 225

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H  RH  AT LL +G DLRSIQ +LGH  + TTQIYTNV +      M +  ++ 
Sbjct: 226 EPVNPHRFRHGCATALLESGADLRSIQMLLGHASIQTTQIYTNVTTNT----MTKTIEEH 281

Query: 318 HP 319
           HP
Sbjct: 282 HP 283


>gi|269965093|ref|ZP_06179258.1| tyrosine recombinase XerC [Vibrio alginolyticus 40B]
 gi|269830396|gb|EEZ84621.1| tyrosine recombinase XerC [Vibrio alginolyticus 40B]
          Length = 229

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 122/234 (52%), Gaps = 11/234 (4%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           LS ++SF  +L  R   + +    +   +K   LP+ L+  +   L++       +E   
Sbjct: 5   LSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVSQLLE------VNEDDP 58

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           +  R+ A++ L+YG GLR++E + +  +++      LR+ GKGDK R VP      + + 
Sbjct: 59  LAVRDRAMMELMYGAGLRLAELVGVDVRDVQLRSGELRVIGKGDKERKVPFSGMATEWVG 118

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           ++  +   DL    +  LF    G  ++    Q+ + +  +   +    + H LRHSFAT
Sbjct: 119 KWLRVR-GDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISPHKLRHSFAT 177

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           H+L +  +LR++Q +LGH  +STTQIYT+++ ++    + + YDQ HP   +K+
Sbjct: 178 HMLESSNNLRAVQELLGHENISTTQIYTHLDFQH----LAQAYDQAHPRARKKN 227


>gi|264677254|ref|YP_003277160.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2]
 gi|262207766|gb|ACY31864.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2]
          Length = 318

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 140/301 (46%), Gaps = 15/301 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            ++  L +E GLS+ TL +Y  D      +LA     K     +      +++ + + R 
Sbjct: 30  QFIDALLLEDGLSRNTLSAYRRDLTATARWLARLQPPKALDAALE----GDLQGYFTAR- 84

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +     S  R L+ ++ +  +  + K       + M   K+   +P+ L ++Q   L+D
Sbjct: 85  VEGTKATSSNRRLTVLRRYFHWALREKRIAADPTVRMLAAKQPPRMPKTLTQEQVEALLD 144

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              + +      +  R+ A+L L+Y  GLR+SE + +    +      LR+ GKG K R+
Sbjct: 145 APDVDSP-----LGLRDRAMLELMYASGLRVSELVGVCMHELDLRSGVLRVTGKGRKERL 199

Query: 200 VPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP     +  +  Y        L       +F   RG  ++  +F   +++  +  G+  
Sbjct: 200 VPFGQEAQHWLERYLQQARAVILGGQQTEEVFVTQRGAGMSRVMFWVIVKKCAQIAGVNS 259

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HTLRH+FATHLL++G DLR +Q +LGH  +STT IYT+V  +     +  ++ + H
Sbjct: 260 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHVARER----LKALHAEHH 315

Query: 319 P 319
           P
Sbjct: 316 P 316


>gi|332982026|ref|YP_004463467.1| integrase family protein [Mahella australiensis 50-1 BON]
 gi|332699704|gb|AEE96645.1| integrase family protein [Mahella australiensis 50-1 BON]
          Length = 287

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 142/273 (52%), Gaps = 15/273 (5%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           ER ++  T++ Y  D RQ+L F    T+ +  +Q +  LS   I  ++   + +     +
Sbjct: 17  ERKMTSNTVECYLTDVRQYLGF----TDGQAALQNM--LSSDAIAEYMDYLKQKGCISTT 70

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           + R +S IKSF K++ ++  +     ++++  K    +P  L+  +   L+    L    
Sbjct: 71  MSRKISSIKSFCKFMVQKGYSDIDPSVDLQTPKMDKRVPAILSPDKVKLLLAQPNLQ--- 127

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
           E K I  R+ A+L +LY  G ++SE L LT  +I  + + ++ +  GDK R++P+   V 
Sbjct: 128 EPKGI--RDKAMLEILYATGFKVSELLELTMDDINTEMNYVKCRS-GDKERLLPI-NRVA 183

Query: 208 KAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              L+ Y +   D  LN   +  +F    G+P++   F + ++   +  G+    T +TL
Sbjct: 184 CQYLQNYIIQARDKLLNGKEESVVFVNCHGQPMSRQGFWKIVKYYAKKAGINQPITPYTL 243

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           RHSFA ++LS+G D++++Q +LGH  +STT  Y
Sbjct: 244 RHSFAINMLSSGMDIKTVQQLLGHTDISTTYTY 276


>gi|126663869|ref|ZP_01734864.1| putative tyrosine recombinase [Flavobacteria bacterium BAL38]
 gi|126624133|gb|EAZ94826.1| putative tyrosine recombinase [Flavobacteria bacterium BAL38]
          Length = 580

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/277 (31%), Positives = 133/277 (48%), Gaps = 38/277 (13%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  TL++Y     QFL + AF   E+I        S  EI  F+     + +   S    
Sbjct: 311 SSSTLRTYCGAFIQFLRYFAFRNPEEI--------SREEIIRFLGSLMERGLSATSGHSM 362

Query: 92  LSGIKSFLK-YLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL---VDNVLLHTSH 147
           ++G++ + +  L KR  T       +   KK   LP  L  ++ L +   VDN       
Sbjct: 363 VNGVQFYYQQVLGKRDFT-----FVLPRPKKEKKLPVVLTMEECLLIFKVVDN------- 410

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
                  ++  +L + YG GLR+SE +SL   +I+ ++  + ++  KG K R+V L  S+
Sbjct: 411 ------PKHKLLLLIGYGAGLRVSEIVSLKWSDILFEEHKIHVKNAKGKKDRMVMLPYSI 464

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
             ++  Y +L         +L +F G   G+P + G  Q+ +R   +  GL    T HTL
Sbjct: 465 VSSLQLYREL------YKGKLYVFEGQFAGEPYSTGSVQQVMRTALKLSGLEKKATVHTL 518

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           RHSFATHLL NG D+R IQ  LGH  + TT +YT++ 
Sbjct: 519 RHSFATHLLENGTDIRYIQQFLGHSSIKTTTVYTHLT 555


>gi|153840548|ref|ZP_01993215.1| tyrosine recombinase [Vibrio parahaemolyticus AQ3810]
 gi|149745789|gb|EDM56919.1| tyrosine recombinase [Vibrio parahaemolyticus AQ3810]
          Length = 362

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/182 (35%), Positives = 96/182 (52%), Gaps = 6/182 (3%)

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           + LL        ++ R+ A+L LLY  GLR++E +SLT +NI   Q  +R+ GKG K R+
Sbjct: 183 DALLDAPDPNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERL 242

Query: 200 VPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+  +    I  +     P  L       +F   R + +    F   I+      G+  
Sbjct: 243 VPMGENAIDWIETFIQQGRPALLGETSSDVVFPSKRARQMTRQTFWHRIKYYAVIAGIDT 302

Query: 259 ST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +I+ Q 
Sbjct: 303 DQLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIHSQH 358

Query: 318 HP 319
           HP
Sbjct: 359 HP 360


>gi|299530798|ref|ZP_07044213.1| tyrosine recombinase XerD [Comamonas testosteroni S44]
 gi|298721314|gb|EFI62256.1| tyrosine recombinase XerD [Comamonas testosteroni S44]
          Length = 318

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 146/302 (48%), Gaps = 17/302 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            ++  L +E GLS+ TL +Y  D      +LA     K     +      +++ + + R 
Sbjct: 30  QFIDALLLEDGLSRNTLSAYRRDLTATARWLARLQPPKALDAALE----GDLQGYFTAR- 84

Query: 80  TQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            +     S  R L+ ++ +  + L++++I  +  +  M   K+   +P+ L ++Q   L+
Sbjct: 85  VEGTKATSSNRRLTVLRRYFHWALREKRIAADPTV-RMLAAKQPPRMPKTLTQEQVEALL 143

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D   + +      +  R+ A+L L+Y  GLR+SE + +    +      LR+ GKG K R
Sbjct: 144 DAPDVDSP-----LGLRDRAMLELMYASGLRVSELVGVRMHELDLRSGVLRVTGKGRKER 198

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP     +  +  Y       +    Q   +F   RG  ++  +F   +++  +  G+ 
Sbjct: 199 LVPFGQEAQHWLERYLQQARAAILGGQQTEEVFVTQRGAGMSRVMFWVIVKKCAQIAGIN 258

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + HTLRH+FATHLL++G DLR +Q +LGH  +STT IYT+V  +     +  ++ + 
Sbjct: 259 SPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHVARER----LKALHAEH 314

Query: 318 HP 319
           HP
Sbjct: 315 HP 316


>gi|240103689|ref|YP_002959998.1| xerC/D integrase/recombinase protein (xerC/xerD) [Thermococcus
           gammatolerans EJ3]
 gi|239911243|gb|ACS34134.1| xerC/D integrase/recombinase protein (xerC/xerD) [Thermococcus
           gammatolerans EJ3]
          Length = 283

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 124/233 (53%), Gaps = 18/233 (7%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+++ R +   +RSL   +  ++++ ++     +  E+  L    + KS  LP+AL ++ 
Sbjct: 51  FLARLRREGYSNRSLNLVVQALRAYFRF---EGLDEEAEKLKPPRVPKS--LPKALTQED 105

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG- 192
              L+  + L           R+  I+ LLYG GLR+SE  +L  ++I  D+  + ++G 
Sbjct: 106 VRKLLSVIPLTRR--------RDRLIVLLLYGAGLRVSELCNLKKEDIDLDRGIITVRGG 157

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R+VP+ P++ + I  Y      D    + + + RG + + L+P      + +  +
Sbjct: 158 KGAKDRVVPIPPALTEEIKAYLSERDDDSEY-LLVEVRRGTKDR-LSPKTVWYLLNRYGK 215

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             G+    T H LRHSFATH+L  G D+R+IQ +LGH  LSTTQIYT V  ++
Sbjct: 216 KAGV--KVTPHMLRHSFATHMLERGVDIRAIQELLGHSNLSTTQIYTKVTVEH 266


>gi|284799628|ref|ZP_05984435.2| tyrosine recombinase XerD [Neisseria subflava NJ9703]
 gi|284797559|gb|EFC52906.1| tyrosine recombinase XerD [Neisseria subflava NJ9703]
          Length = 292

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 139/281 (49%), Gaps = 16/281 (5%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L++L ++  LS  TLQSY    R  +   A  TE      +  + + ++      ++ T 
Sbjct: 11  LESLWLQDRLSYNTLQSYR---RDLVKVAARLTEGGQDWLSADEFALSDAVYAEGEKNT- 66

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                S  R+LS  K    +L++     ++    ++  K    LP  + E Q   L+   
Sbjct: 67  -----SQARALSACKRMYGWLEETGQRADNPTRFLKAPKSERKLPTLITEAQIDALLAEP 121

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
            + T H       R+ A+L ++Y  GLR++EA+ LT  +I   + ++R  GKGDK+R+VP
Sbjct: 122 DVETLH-----GLRDKALLEVMYATGLRVTEAVKLTLSDIDLHRGSIRTIGKGDKLRLVP 176

Query: 202 LLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           L       +  Y +   P  L   I   +F   +   ++  +    +++     G+  S 
Sbjct: 177 LGQEAAYWVERYCNESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKEYAEAAGIA-SL 235

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + H LRH+FATHL+++G DLRS+Q +LGH  ++TTQIYT+V
Sbjct: 236 SPHGLRHAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHV 276


>gi|225175747|ref|ZP_03729740.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
 gi|225168671|gb|EEG77472.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
          Length = 300

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 143/293 (48%), Gaps = 21/293 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQF--LIFLAFYTEEKITIQTIRQLSYTEIRAFI- 75
           Q ++  LEIERGLS  T+  Y  D   F  L+   F+ +  +    + QL    +R F+ 
Sbjct: 10  QEFVDYLEIERGLSDRTVDGYRMDIGVFARLMVREFFPQGMV----LNQLETKHVRRFLV 65

Query: 76  --SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
              K R    G R+  R L+ ++S+ K+L+      ++ +  +RN+K +  LP  L   +
Sbjct: 66  YLKKERDNNAGTRN--RKLASLRSYFKFLEIHGYVEKNPVQQLRNVKTAKLLPVFLTIDE 123

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           +     + L++ + +      R+ A++ +L   G R+ E +SL   N+  ++  +RI GK
Sbjct: 124 S-----DRLINAAKKQAKPPYRDHAMMRVLLQTGCRVEELVSLNIGNLNLEEKYMRIIGK 178

Query: 194 GDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G+K R++PL      A+ EY +   P D           G+R     PGV Q    +L  
Sbjct: 179 GNKERMIPLTDKTCAALAEYLEARVPKDEKEKAVFLNHLGMR--ITYPGV-QLVFNRLCE 235

Query: 253 YLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             GL     T H LRH+  T L++ G DL +I+ I GH  +S+T+IY +V  +
Sbjct: 236 EAGLNRGRLTVHKLRHTCFTMLMNAGVDLPTIKDIAGHESISSTEIYVHVTQR 288


>gi|217978007|ref|YP_002362154.1| integrase family protein [Methylocella silvestris BL2]
 gi|217503383|gb|ACK50792.1| integrase family protein [Methylocella silvestris BL2]
          Length = 314

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 139/309 (44%), Gaps = 54/309 (17%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  +  ERG +K TL++Y  D   +   L    +  I      + +  +I A+I+    
Sbjct: 14  FLDMVAAERGGAKNTLEAYARDLADYAGRLKAAKKSPI------EATGDDIGAYIASLEK 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   S  R LS I+   ++L      ++     +   ++   LP+ L+    +  VD 
Sbjct: 68  RGLKPASSARKLSAIRQLHRFLVAESYRSDDPAAIIEGPRRGRGLPKTLS----IAEVDR 123

Query: 141 VLLHTSHETKWIDA------------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
            LL  S E   +DA            R + ++ LLY  GLR+SE +SL P++I   +  L
Sbjct: 124 -LLAVSKE--GLDAAARSPGEQLRALRTACLIELLYATGLRVSELVSL-PKSIARGKDPL 179

Query: 189 -RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF---- 243
             I+GKG + R+ P+    R+AI  Y  L            L R   G    P +F    
Sbjct: 180 IPIRGKGGRDRLAPISTKAREAIAAYRAL------------LDRLAPGAASGPWLFPADS 227

Query: 244 -------QRYIRQLRRYLGLPLS----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                  Q + R L+             + H LRH+FA+HLL NG DLR +Q +LGH  +
Sbjct: 228 ESGHLTRQAFARDLKTAAAAAGLSAARVSPHVLRHAFASHLLQNGADLRVVQELLGHADI 287

Query: 293 STTQIYTNV 301
           STTQIYT+V
Sbjct: 288 STTQIYTHV 296


>gi|188995443|ref|YP_001929695.1| putative site-specific recombinase [Porphyromonas gingivalis ATCC
           33277]
 gi|188595123|dbj|BAG34098.1| putative site-specific recombinase [Porphyromonas gingivalis ATCC
           33277]
          Length = 401

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 125/263 (47%), Gaps = 7/263 (2%)

Query: 41  CDTRQFL-IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
           CD  Q L  + AF++E    +    +      RA++           S++R LS +KSF 
Sbjct: 27  CDYAQDLNRYAAFFSEHTGEVFEPSERDKDVARAWLFSLMEAGQKSSSVQRRLSALKSFY 86

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           KY+ K  +  +S +  +R  KK   LP  +   +    ++ VL     E  +   R+  I
Sbjct: 87  KYMVKIGLIGQSPVRMLRGPKKERPLPVFVPNDE----MEKVLNKPIREDDFEAVRDRLI 142

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           L  LY  GLR SE  +L    + D    +RI GK +K RIVP    ++  I  Y ++   
Sbjct: 143 LETLYEVGLRRSEIATLKDNAVEDKAGCIRIIGKRNKERIVPFGKRLQDMIDNYRNIR-- 200

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
           +  +      F  + G+PL   V  + +R     +      + H LRHSFAT +L++G D
Sbjct: 201 EEKVGKSDFFFVSLDGRPLTGEVVYKIVRTALANVPHLTKRSPHVLRHSFATEMLNHGAD 260

Query: 280 LRSIQSILGHFRLSTTQIYTNVN 302
           L S++ +LGH  LSTT  YT+++
Sbjct: 261 LMSVKELLGHDSLSTTVQYTHIS 283


>gi|261345243|ref|ZP_05972887.1| tyrosine recombinase XerC [Providencia rustigianii DSM 4541]
 gi|282566940|gb|EFB72475.1| tyrosine recombinase XerC [Providencia rustigianii DSM 4541]
          Length = 311

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 150/314 (47%), Gaps = 32/314 (10%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L+ + + +L+ L +ER LS +T+ +Y    RQ         E K++    +QL     R 
Sbjct: 15  LMTQVEAFLRYLRVERRLSPVTITNYR---RQLSAVCQILDELKVS--QWQQLDIAIGRN 69

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             +K R   +   S+   LS ++SF  ++ ++     + +  +   K    LP+ ++   
Sbjct: 70  VAAKSRRTGLQAASMALRLSALRSFCDWMVEQGELPANPVKTIHAPKGKKRLPKNMD--- 126

Query: 134 ALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
               VD V  LL+       +  R+  +L ++YG GLR+SE + L  +++  +   + + 
Sbjct: 127 ----VDEVSQLLNMDSGDPLV-VRDRTMLEVMYGAGLRLSELVGLDVKHLDLNSGEVWVM 181

Query: 192 GKGDKIRIVPLLPSVRK------AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
           GKG K R +P+  +          + E YD  P D  + I     + I  + +     Q 
Sbjct: 182 GKGSKERRIPMGKTAVNWLKRWLEMRELYD--PEDGAVFISTQSGKRISNRNVQKRFEQW 239

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            I+Q     G+      H LRHSFATH+L + G+LR +Q +LGH  LSTTQIYT+++ ++
Sbjct: 240 GIKQ-----GVNSHINPHKLRHSFATHILESSGNLRGVQELLGHANLSTTQIYTHLDFQH 294

Query: 306 GGDWMMEIYDQTHP 319
               +  +YD  HP
Sbjct: 295 ----LASVYDVAHP 304


>gi|268592909|ref|ZP_06127130.1| tyrosine recombinase XerC [Providencia rettgeri DSM 1131]
 gi|291311699|gb|EFE52152.1| tyrosine recombinase XerC [Providencia rettgeri DSM 1131]
          Length = 309

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 149/314 (47%), Gaps = 32/314 (10%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L+ + + +L  L +ER LS +T+ +Y       +  LA      + I   +++  T +R 
Sbjct: 13  LMSQIEAFLYYLRVERRLSPVTITNYRRQLSVIVEMLAL-----LNIHEWQKVDATIVRN 67

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             +K R   +   S+   LS ++SF  ++ ++     +    +   K    LP+ ++   
Sbjct: 68  IAAKSRKSGLQAASMALRLSSLRSFFDWMVQQGELPANPAKAIHAPKSKKRLPKNMD--- 124

Query: 134 ALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
               VD V  LL+       +  R+  +L ++YG GLR+SE + L  +++  +   + + 
Sbjct: 125 ----VDEVSQLLNMDSGDPLV-VRDRTMLEVMYGAGLRLSELVGLDVRHLDLNTGEVWVM 179

Query: 192 GKGDKIRIVPLLPSVRK------AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
           GKG K R VP+  +          + E YD  P D  + I     + I  + +     Q 
Sbjct: 180 GKGSKERRVPMGKTAVSWLQRWLEMRELYD--PEDDAVFISTQSGKRISNRNVQKRFEQW 237

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            I+Q     G+      H LRHSFATH+L + G+LR +Q +LGH  LSTTQIYT+++ ++
Sbjct: 238 GIKQ-----GVNSHINPHKLRHSFATHILESSGNLRGVQELLGHANLSTTQIYTHLDFQH 292

Query: 306 GGDWMMEIYDQTHP 319
               +  +YD  HP
Sbjct: 293 ----LANVYDVAHP 302


>gi|158313594|ref|YP_001506102.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158108999|gb|ABW11196.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 383

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 148/316 (46%), Gaps = 25/316 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L +++ ERGL++ ++ +Y  D R++   LA        I ++  +   +I  F +  
Sbjct: 27  ERYLDHVDGERGLARNSVLAYRRDLRRYREHLA-----AGGITSLAAVGEAQIAEFAAAL 81

Query: 79  RT-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           R        +   S+ R L  ++S  ++  +    +E     +R       LPRAL   Q
Sbjct: 82  REGDETHPPLAPASVARMLVAVRSLHRFAAQEGDVSEDVARPVRPPVPPRRLPRALTVDQ 141

Query: 134 ALTLVDNVLLHTSH--ETKWIDA-------RNSAILYLLYGCGLRISEALSLTPQNIMDD 184
              ++   +       E    D        R++A+L LLYG G RISEA+ L   ++  D
Sbjct: 142 VSAVIAAAVAGGPEYAEVSGGDPAELARRLRSAALLELLYGTGARISEAVGLDLDDLDLD 201

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVF 243
           +S +R++GKG + R+VPL      A+  Y     P  +       +F   RG  L+    
Sbjct: 202 RSAVRLRGKGGRDRVVPLGRYAVTALERYLRRGRPHLVTECSGTAVFVSRRGNRLSRQSA 261

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              +R      G+P   + H LRHSFATHLL  G D+R +Q +LGH  +STTQIYT V  
Sbjct: 262 WSALRAAANAAGVP-GASPHVLRHSFATHLLDGGADVRVVQELLGHASVSTTQIYTLVTM 320

Query: 304 KNGGDWMMEIYDQTHP 319
               D + E+Y  +HP
Sbjct: 321 ----DHLREVYASSHP 332


>gi|323137229|ref|ZP_08072308.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322397587|gb|EFY00110.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 316

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 136/304 (44%), Gaps = 34/304 (11%)

Query: 17  ERQ--NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ERQ   +L  L  ERG ++ T  +Y  D   ++ FL         + +        +RA+
Sbjct: 6   ERQLDAFLDMLAAERGAAQNTQDAYRRDLADYIDFLRGQGTNPDDVTS------DGVRAY 59

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++    + +   ++ R +S I+ F K+L   +   +     +   ++  S P  ++  + 
Sbjct: 60  LASLEPRGMSAATVARRISAIRQFHKFLYVDRHRGDDPAAALEGPRRVRSAPGVMSVAEV 119

Query: 135 LTLVDNVLLHTSHETKWI-----DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
             L+         E + +      AR  A+L  LY  GLR+SE +SL           + 
Sbjct: 120 DRLLSVAREGLDDEKRPLRERLRAARLYALLETLYATGLRVSELVSLPKSAARARDPFIT 179

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-LNPG------- 241
           I+GKG + R+ PL    + A+ +Y  L      L+   P   G+   P L P        
Sbjct: 180 IRGKGGRERLAPLTDRAKSALADYRKL------LDATAP---GLAEGPFLFPADSDSGHL 230

Query: 242 ---VFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
               F R ++ L    GL  +    H LRH+FA+HLL NG DLR +Q +LGH  +STTQI
Sbjct: 231 TRQAFARDLKMLGVVAGLSAAQVHPHALRHAFASHLLQNGADLRVVQELLGHADISTTQI 290

Query: 298 YTNV 301
           YT+V
Sbjct: 291 YTHV 294


>gi|146329464|ref|YP_001208978.1| site-specific recombinase XerC [Dichelobacter nodosus VCS1703A]
 gi|146232934|gb|ABQ13912.1| site-specific recombinase XerC [Dichelobacter nodosus VCS1703A]
          Length = 302

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 158/319 (49%), Gaps = 36/319 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L+ ERGLS  T  +Y     Q   +  F+ E       + Q     ++++++ +
Sbjct: 3   EAFLHALQYERGLSPQTCTTYRYSLNQAQRY--FHGE-------LEQQKANALQSYLNHQ 53

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLK--KRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           R ++I   +L R  + ++++  +LK  ++++   +  L +  ++K  +LP+ L+  +   
Sbjct: 54  RRKRIAPITLNRHRAALRTYFSWLKQTRQRLDNPAMALQIPKIRK-KTLPKTLSIDEI-- 110

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
               +LL   +  + +  RN A+  L Y  GLR++E +++  ++       L I GKG  
Sbjct: 111 ---TILLAPPNSEEPLTLRNHALFELAYSAGLRLAELIAINWRDCARLPDELIITGKGGY 167

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRR 252
            R + +    + A+ ++      ++   I  P    LF   +G+ ++P   + YI  L R
Sbjct: 168 QRRIFIGTHAKMALSKW-----LNVRAQIAAPEEKALFVSNQGRRIHPRSVE-YI--LHR 219

Query: 253 YLGLPLST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           Y    L     T H LRHSFA H+L   GD+R++Q +LGH R+STTQIYT ++ +     
Sbjct: 220 YAQSRLPNRHITPHMLRHSFAGHMLQACGDIRAVQDLLGHQRISTTQIYTFLDFQQ---- 275

Query: 310 MMEIYDQTHPSITQKDKKN 328
           + ++YD+ HP   +    N
Sbjct: 276 LSKVYDRAHPRAQKNHASN 294


>gi|237718760|ref|ZP_04549241.1| integrase [Bacteroides sp. 2_2_4]
 gi|260175400|ref|ZP_05761812.1| integrase, site-specific recombinase [Bacteroides sp. D2]
 gi|299144639|ref|ZP_07037707.1| tyrosine recombinase XerC [Bacteroides sp. 3_1_23]
 gi|315923630|ref|ZP_07919870.1| integrase [Bacteroides sp. D2]
 gi|229451892|gb|EEO57683.1| integrase [Bacteroides sp. 2_2_4]
 gi|298515130|gb|EFI39011.1| tyrosine recombinase XerC [Bacteroides sp. 3_1_23]
 gi|313697505|gb|EFS34340.1| integrase [Bacteroides sp. D2]
          Length = 293

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 147/301 (48%), Gaps = 13/301 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  L+ ER  S+ T+ +Y  D +Q    L  + +E+       ++    IR +I   
Sbjct: 4   ESFLDYLQYERNYSEKTVLAYGEDIKQ----LQEFAQEEYGKFNPLEVEAELIREWIVSL 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S+ R LS +++F KYL ++  TT   +  ++  K    LP  L E +   L+
Sbjct: 60  MDKGYTSTSVNRKLSSLRTFYKYLIRQGKTTIDPLRKIKGPKNKKPLPVFLKENEMNRLL 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D+    T     +   R+  ++ + Y  G+R+SE + L  +++    S L++ GK +K R
Sbjct: 120 DD----TDFGEGFKGCRDRLVIEVFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQR 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++P    +R+ +LEY ++    +    +    R    +     V+    R L +   L  
Sbjct: 176 LIPFGDELRELMLEYINVRNETIPERSEAFFIRENGERLYKNLVYNLVKRNLSKVATLK- 234

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FAT +L+N  +L +++ +LGH  ++TT+IYT+   +     + ++Y Q H
Sbjct: 235 KRSPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIYTHATFEE----LKKVYKQAH 290

Query: 319 P 319
           P
Sbjct: 291 P 291


>gi|319948060|ref|ZP_08022234.1| site-specific tyrosine recombinase XerC [Dietzia cinnamea P4]
 gi|319438299|gb|EFV93245.1| site-specific tyrosine recombinase XerC [Dietzia cinnamea P4]
          Length = 177

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 5/173 (2%)

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
           E   +  R+  ++ LLY CG+R++E   L   ++  ++  LR+ GKGD+ R VP      
Sbjct: 7   EGDPLAVRDRLVVELLYSCGIRVAELCGLDVDDVDAERRLLRVIGKGDRERAVPYGAPAD 66

Query: 208 KAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           +A+  + D   P   N      L  G RG  L+P   +R + ++          + H LR
Sbjct: 67  RALRAWLDTGRPALTNARSGPALLLGARGGRLDPRAARRIVNEVSEATPGAPRVSPHALR 126

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HS ATHLL  G DLR +Q +LGH   +TTQIYT+V+++     +   Y   HP
Sbjct: 127 HSSATHLLEGGADLRHVQELLGHSTPATTQIYTHVSAER----LRAAYRGAHP 175


>gi|218530686|ref|YP_002421502.1| tyrosine recombinase XerD [Methylobacterium chloromethanicum CM4]
 gi|218522989|gb|ACK83574.1| tyrosine recombinase XerD [Methylobacterium chloromethanicum CM4]
          Length = 328

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 135/296 (45%), Gaps = 30/296 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L  L  ERG +  TL +Y  D   +L +LA    +    Q        ++RA+I+  
Sbjct: 17  QLFLDMLAAERGAAANTLAAYRRDLDDYLGYLAQGGIDPEEAQA------EQVRAYIASL 70

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   S  R LS I+ F ++L     +       +   +++  LP+ L+  +    V
Sbjct: 71  EPRGLKASSAARRLSCIRGFHRFLYAEGYSETDPTAPVAAPRRAKGLPKVLSVAE----V 126

Query: 139 DNVLLHTSHETKWIDARNS----------AILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           D  LL T+ E       +            +L LLY  GLR+SE ++L        +  L
Sbjct: 127 DR-LLATARERVEAAGDDRAEARAAARMLCLLELLYATGLRVSELVALPRSAAATRERYL 185

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRG-IRGKPLNPGVFQRY 246
            ++GKG + R+VPL    R+A+  +        +L  +   LF        L    F R 
Sbjct: 186 VVKGKGGRERLVPLTDLAREAMRTHV------AHLTAEGAWLFPAESESGHLTRQAFARD 239

Query: 247 IRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           ++      GL     + H LRH+FA+HLL NG DLR +Q +LGH  +STTQIYT+V
Sbjct: 240 LKTAAAAAGLRTDRVSPHVLRHAFASHLLQNGADLRIVQELLGHADISTTQIYTHV 295


>gi|294789666|ref|ZP_06754899.1| tyrosine recombinase XerC [Simonsiella muelleri ATCC 29453]
 gi|294482378|gb|EFG30072.1| tyrosine recombinase XerC [Simonsiella muelleri ATCC 29453]
          Length = 302

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 123/240 (51%), Gaps = 12/240 (5%)

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           RSL R L+  + + +YL      + + I +++  K    LP+A++ +Q   ++D  +  +
Sbjct: 73  RSLARKLTSWRQYAEYLVHLGELSSNPIAHIKAPKPPERLPKAIDREQINQMIDQDIPQS 132

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL-P 204
                 +  R+ A++ L YG GLR++E  +L   +++ D   + + GKG + R VPL  P
Sbjct: 133 D---DVLAIRDHAMIELFYGSGLRLAELHALNVDDVLLDAGWVMVSGKGKRQRQVPLTRP 189

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           S+  A ++ Y    +   ++ +L LF    G  L      + +    +        + H 
Sbjct: 190 SI--AAIDAYLSTRY--AVDGELALFTSRHGTRLCTRQIAKRLEIWSQNNQANQHISPHM 245

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LRHS+A+HLL    D+R++Q +LGH  LSTTQIY  ++     D + ++YD THP   +K
Sbjct: 246 LRHSYASHLLQASRDVRAVQELLGHQNLSTTQIYAKLDF----DHLAQVYDDTHPRAKRK 301


>gi|227547623|ref|ZP_03977672.1| tyrosine recombinase XerC [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|227211878|gb|EEI79774.1| tyrosine recombinase XerC [Bifidobacterium longum subsp. infantis
           ATCC 55813]
          Length = 355

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 144/337 (42%), Gaps = 62/337 (18%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +++  L+  RGLS  TL++Y  D    L        E   +  + +++  ++R++++   
Sbjct: 12  SFVSYLKSNRGLSVNTLKAYRADLTACLHLF-----ELRGVTDLNEITLDDLRSWMAVE- 65

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           ++     S+ R    ++ F  +  +  +TT      +      ++LP  L E QA  L+D
Sbjct: 66  SRDHARSSMARKTVAVRGFFAWAYEHGLTTTDPAATLMTPSIPSTLPAVLTESQAEQLLD 125

Query: 140 NVLLHTSHETKWID---------------------------------------------- 153
            V  H     ++ D                                              
Sbjct: 126 -VAEHAVATNQYKDDGGAAAASGSGKAAGKTADKSADTVNRSEAPARADKRDNARVTAES 184

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            RN+AIL LLY  G+R++E +S+   +I     T+++ GKG+K R+VP     ++A+  +
Sbjct: 185 QRNAAILELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRALETW 244

Query: 214 YD--------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            +             +       LF G RG  ++  + +  + +  R  G+P   + H L
Sbjct: 245 LEQGRPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVP-DISPHAL 303

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           RHS ATH+L  G DLR +Q +LGH  L TTQ YT+V+
Sbjct: 304 RHSAATHILDGGADLREVQEMLGHSSLKTTQRYTHVS 340


>gi|302865900|ref|YP_003834537.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
 gi|315502445|ref|YP_004081332.1| integrase family protein [Micromonospora sp. L5]
 gi|302568759|gb|ADL44961.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
 gi|315409064|gb|ADU07181.1| integrase family protein [Micromonospora sp. L5]
          Length = 352

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 82/157 (52%), Gaps = 6/157 (3%)

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL-LPSVRKAILEYYDLCPFDLN 222
           YG G+RISEA  L   ++   +  +R+ GKG + R VP  +P+ R       D  P  L 
Sbjct: 199 YGTGVRISEACGLDVSDVDQARRVVRVLGKGGRERAVPYGVPAQRALDAWLRDGRPALLA 258

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
                 L  G RG  LNP   +R +       G+P   T H LRHS ATHLL  G DLR+
Sbjct: 259 PGSGRALLLGARGGRLNPTTARRIVSGWAGAAGVP-RVTPHGLRHSAATHLLEGGADLRA 317

Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           +Q +LGH  L++TQIYT+V+ +     +   Y Q HP
Sbjct: 318 VQELLGHSSLASTQIYTHVSVER----LRAAYRQAHP 350


>gi|73666749|ref|YP_302765.1| Phage integrase, N-terminal SAM- like [Ehrlichia canis str. Jake]
 gi|72393890|gb|AAZ68167.1| Phage integrase, N-terminal SAM- like protein [Ehrlichia canis str.
           Jake]
          Length = 309

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 154/292 (52%), Gaps = 21/292 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ +  E+ +S  T QSY+ D    L+ L  +  +K  +  +   S  E++ +I     
Sbjct: 10  FLEAITAEKHISYNTYQSYKTD----LLGLCEFVSKKNLL--LVDTSINELQNYIRLLYE 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     ++ R +S IK+F  +L +  +      L +   K S SLP+AL+ ++   L+D 
Sbjct: 64  KGYKANTVLRKISAIKNFYGFLYRDNMIESDPTLYLDAPKLSRSLPKALSFEEISRLLDV 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD---DQST----LRIQGK 193
             L  S + +    R +A++ +LY  G+RISE + L   ++++   D +     ++I+GK
Sbjct: 124 AALDGSPDGR----RLNAMVNILYSSGIRISELVCLKFYSVLEALKDHNAEIYHIKIKGK 179

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIR-GKPLNPGVFQRYIRQL 250
            +K RIV L  S  ++I +Y ++  + +     +   LF G +   P+      + ++ L
Sbjct: 180 ANKERIVLLNLSAVESIKKYIEIYKYFVPNGFEVSQWLFPGTKFDYPITRQRVGQLLKDL 239

Query: 251 RRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               G+ ++  + H LRHSFATHLL+NG ++  IQ +LGH  LSTTQIYT++
Sbjct: 240 AMNAGIDITKISPHKLRHSFATHLLNNGSNIIFIQKMLGHANLSTTQIYTHI 291


>gi|327398928|ref|YP_004339797.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411]
 gi|327181557|gb|AEA33738.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411]
          Length = 279

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 137/277 (49%), Gaps = 28/277 (10%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RG S  T+ SY  D    L  ++ + ++K+       L    +  F+     +     S 
Sbjct: 17  RGFSDNTISSYAND----LSLVSNFFKDKM-------LDDNGVGNFVLWLSQKNYKPSSF 65

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R LS  +SFLK+L K  +    ++ +++N K S  +PR +  +    +++         
Sbjct: 66  NRKLSSFRSFLKFLTKEGLCN-IDVSSIKNKKYSRKVPRYIPFETIKKVME--------- 115

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
               D +    + L+Y  GLR+SE ++L   +I+ D   +R++GKG K R+VP+     K
Sbjct: 116 ----DKKTGLFVELIYSSGLRVSELVNLRVSDIIFDAGFIRVRGKGSKERLVPVGNGTLK 171

Query: 209 AILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
            +  Y +    ++ N +    LF    G+P +     + I++  +  G+ +    H LRH
Sbjct: 172 RLKSYIENARKNIKNSSNNDYLFLSSWGRPFSRQGLWKLIKRSFKKEGIDVH--PHMLRH 229

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            FATH++ NG ++R++Q +LGH  ++TTQIYT++  K
Sbjct: 230 MFATHMIENGANIRAVQEMLGHRSITTTQIYTDITDK 266


>gi|260752898|ref|YP_003225791.1| integrase family protein [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258552261|gb|ACV75207.1| integrase family protein [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 307

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 118/236 (50%), Gaps = 11/236 (4%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++ R  + +K F ++L +  + T+    ++ +   S +LP+ L   +   L   +     
Sbjct: 75  TVARKSAALKHFYRFLLEEGMRTDDPSSSLPHAGISRNLPKILTTAEVERLFVTLQQRYD 134

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                   R  A++ LLYG GLR SE +SL  Q  +  Q  L ++GKG + R+VP+    
Sbjct: 135 RAATPSTLRLMALVELLYGSGLRASELVSLPKQAFIRKQPFLILKGKGGRERLVPISDRA 194

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS-TTAHTL 265
             A+  +    P        L LF   +G      ++Q  I++L     LP    + H L
Sbjct: 195 TDAVAAWLVHVP-----EKSLWLFPSGKGHISRIRLYQ-LIKELAVEADLPRERVSPHVL 248

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           RH+FATHLL  G DLR +Q +LGH  +STTQIYT+V+S+     ++E+ +  HP +
Sbjct: 249 RHAFATHLLEGGADLRVLQLLLGHADISTTQIYTHVDSQK----LVELVNSRHPLV 300


>gi|332981969|ref|YP_004463410.1| integrase family protein [Mahella australiensis 50-1 BON]
 gi|332699647|gb|AEE96588.1| integrase family protein [Mahella australiensis 50-1 BON]
          Length = 322

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 162/320 (50%), Gaps = 35/320 (10%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF------YT 54
           M+ N+ P+I++  L+     +L+N++   G S  T++ Y  D R F  FL         +
Sbjct: 1   MQINDTPDIINDFLI-----YLENVQ---GKSPNTVKEYFYDLRTFFRFLKIRRGMVDES 52

Query: 55  EE-------KITIQTIRQLSYTEIRAFISKRRTQKIGD-RSLKRSLSGIKSFLKYL-KKR 105
           E+        I +  ++ +  +++ A+IS    QK  + RS  R ++ I++F KYL  K 
Sbjct: 53  EDIRSIDIRDIDLSIVKSVQLSDLYAYISFLSNQKHNNARSRARKVASIRTFFKYLTNKA 112

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
           K+ + +  + + + K  +  P  L+ +++  L+ +V             R+ AIL L   
Sbjct: 113 KLLSVNPAIELESPKVGSRNPVYLSLEESRELLASV-------DGPFKERDYAILTLFLN 165

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           CGLR+SE + +   +I +D  TLR+ GKG+K R V L  +   AI  Y    P D  +  
Sbjct: 166 CGLRLSELVGINIGDIKED--TLRVIGKGNKERTVYLNEACLNAIETYLKTRPHD-GVKD 222

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DLRSI 283
           +  LF     K ++P   Q  +++     GL  +  + H LRH+ AT +   G  D+R++
Sbjct: 223 REALFLSKLKKRISPKTVQYIVKKYISNAGLDSTKYSTHKLRHTAATLMYKYGDIDIRTL 282

Query: 284 QSILGHFRLSTTQIYTNVNS 303
           Q +LGH  +STTQIYT+V++
Sbjct: 283 QQLLGHENISTTQIYTHVDN 302


>gi|56551494|ref|YP_162333.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56543068|gb|AAV89222.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 307

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 122/238 (51%), Gaps = 15/238 (6%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++ R  + +K F ++L +  + T+    ++ +   S +LP+ L   +   L   V L   
Sbjct: 75  TVARKSAALKHFYRFLLEEGMRTDDPSSSLPHAGISRNLPKILTTVEVERLF--VTLQQR 132

Query: 147 HETKWIDA--RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           +E     +  R  A++ LLYG GLR SE +SL  Q  +  Q  L ++GKG + R+VP+  
Sbjct: 133 YERAATPSTLRLIALVELLYGSGLRASELVSLPKQAFIRKQPFLILKGKGGRERLVPISD 192

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS-TTAH 263
               A+  +    P        L LF   +G      ++Q  I++L     LP    + H
Sbjct: 193 RATDAVAAWLVHVP-----EKSLWLFPSGKGHISRIRLYQ-LIKELAVEADLPRERVSPH 246

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            LRH+FATHLL  G DLR +Q +LGH  +STTQIYT+V+S+     ++E+ +  HP +
Sbjct: 247 VLRHAFATHLLEGGADLRVLQLLLGHADISTTQIYTHVDSQK----LVELVNSRHPLV 300


>gi|16127236|ref|NP_421800.1| integrase/recombinase XerD [Caulobacter crescentus CB15]
 gi|221236037|ref|YP_002518474.1| integrase/recombinase [Caulobacter crescentus NA1000]
 gi|34223000|sp|Q9A437|XERD_CAUCR RecName: Full=Tyrosine recombinase xerD
 gi|13424644|gb|AAK24968.1| integrase/recombinase XerD [Caulobacter crescentus CB15]
 gi|220965210|gb|ACL96566.1| integrase/recombinase (XerD/RipX family) [Caulobacter crescentus
           NA1000]
          Length = 305

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 136/308 (44%), Gaps = 28/308 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ + +ER  ++ TL +Y  D      FL+    +      +       I A+      
Sbjct: 11  FLEMMAVERAAARNTLTAYGKDLEDARGFLSRSGHD------LHDADAETIEAYFQDLGA 64

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   +  R  S ++ F +++      T+     +   K    LP+ L   +    ++ 
Sbjct: 65  RGLSPATAARRRSAVRQFYRFVLGEGWRTDDPSRRVAAPKAGRPLPKVLERDE----IER 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +L   S +      R + ++ L+Y  GLRISE L+L    +  D + L ++GKG K R+ 
Sbjct: 121 LLAAASAKDSAQGLRLACMIELIYASGLRISELLALPLLALARDPAYLIVKGKGGKERLA 180

Query: 201 PLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           PL  + R A+  Y        P     +  L   RG  G+ L P    R + QL     +
Sbjct: 181 PLNDAARAAVKAYLVERPAFLPKGQKDSPWLFPSRGATGR-LTP----RRVGQLLEDAAI 235

Query: 257 PLS-----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
                    + H LRH+FATHLL  G DLR IQ++LGH  ++TTQIYT+V     G+ + 
Sbjct: 236 AAGIDRQKVSPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHV----AGEHLA 291

Query: 312 EIYDQTHP 319
            I    HP
Sbjct: 292 HIVQTKHP 299


>gi|312143561|ref|YP_003995007.1| integrase family protein [Halanaerobium sp. 'sapolanicus']
 gi|311904212|gb|ADQ14653.1| integrase family protein [Halanaerobium sp. 'sapolanicus']
          Length = 311

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 153/323 (47%), Gaps = 31/323 (9%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE--EKITIQTIRQL 66
           I   + L+    + + L++E+G SKLT++ YE D +Q   +L    +  E+   + + +L
Sbjct: 3   ISQLKFLEAVNKFKKYLDVEKGYSKLTIKEYENDLQQLYRYLKEELDFPEEFKPEDVDRL 62

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
              E  A        K   R+  R L  I+SF KYL +  +  ++               
Sbjct: 63  DIAEFLADAVIVNDNKAITRN--RKLFAIRSFYKYLLRYGVIEKNP-------------A 107

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDA----------RNSAILYLLYGCGLRISEALSL 176
            A++  +  T ++ + L      K+I A          R+ AI  L    GLRISE ++L
Sbjct: 108 EAIDSSKTDTKLEPIYLKLKEAQKFIAAIDDKDNINRLRDIAITKLFLYAGLRISELVNL 167

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDL-NLNIQLPLFRGIR 234
              N+  +  +++  GKG K R VPL   V +A+  Y  +     + + + +  +F    
Sbjct: 168 DFDNVDFEDGSIKFYGKGSKERYVPLHNDVTEALKRYLKERNTIKIKDQDARQAIFLSRH 227

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           G+ ++P   Q ++++  +  GL  +   T H LRH+FA+ L     D++ +Q +LGH  +
Sbjct: 228 GRRISPRTIQLFVKKYAKKAGLSRADKITPHKLRHTFASMLYRQTKDIKVLQDLLGHANI 287

Query: 293 STTQIYTNVNSKNGGDWMMEIYD 315
           STTQIYT+V+++     + E+ D
Sbjct: 288 STTQIYTHVDTEEKKSAIDEMPD 310


>gi|257867811|ref|ZP_05647464.1| site-specific recombinase [Enterococcus casseliflavus EC30]
 gi|257801894|gb|EEV30797.1| site-specific recombinase [Enterococcus casseliflavus EC30]
          Length = 182

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 66/169 (39%), Positives = 88/169 (52%), Gaps = 9/169 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           RN A+L +LYG GLR+SE  SLT   I  +   L I GKG+K R VP     + A+  Y 
Sbjct: 17  RNQALLEVLYGSGLRVSECSSLTLGAIDWESGVLLIHGKGNKDRYVPFGSYAQAAVKRYL 76

Query: 215 DLCPFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
                 L    N   ++ LF    G  +     +  + Q+ R   L      H LRH+FA
Sbjct: 77  SSGRKQLMEKQNKEHEV-LFVNHLGDGITATGIEYVLNQIIRKSSLDSKIHPHMLRHTFA 135

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           THLL+NG D+R++Q +LGH  LSTTQIY +V      D + + Y Q HP
Sbjct: 136 THLLNNGADMRTVQELLGHANLSTTQIYAHVTK----DSLQKNYRQFHP 180


>gi|253566649|ref|ZP_04844102.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|251944821|gb|EES85296.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
          Length = 293

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 143/300 (47%), Gaps = 13/300 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L  ER  S+ T+ +Y  D  Q    L  + +E++      ++    +R +I    
Sbjct: 5   SFLDYLRYERNYSEKTVLAYGEDISQ----LREFAQERMEKFDPAEVKPELVREWIVSLM 60

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q     S+ R LS ++SF KYL ++   +   +  +   K    LP  L E +   L+D
Sbjct: 61  DQGYTSTSVNRKLSSLRSFYKYLLRQGEVSVDPLRKITGPKNKKPLPSFLKESEMNKLLD 120

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           +    T         R+  I+ + Y  G+R+SE + L  +++    S L++ GK +K R+
Sbjct: 121 D----TDFGEGLKGCRDRLIIEMFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQRL 176

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +P    +++ +LEY D+    ++        R    +     V+    R L + + L   
Sbjct: 177 IPFGDELKETMLEYVDIRNEMISGRSDAFFVRENGERLYKNLVYNLVKRNLSKVVTLK-K 235

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + H LRH+FAT +L+N  +L +++ +LGH  L+TT+IYT+   +     + ++Y Q HP
Sbjct: 236 RSPHVLRHTFATTMLNNDAELGAVKELLGHSSLATTEIYTHTTFEE----LKKVYKQAHP 291


>gi|323499333|ref|ZP_08104310.1| super-integron integrase IntIA [Vibrio sinaloensis DSM 21326]
 gi|323315721|gb|EGA68755.1| super-integron integrase IntIA [Vibrio sinaloensis DSM 21326]
          Length = 320

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 100/221 (45%), Gaps = 49/221 (22%)

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  LN+++    V +           ID R    + LLYG GLR+ E + L  Q++   
Sbjct: 102 LPVVLNKQEMRRFVQH-----------IDPRYKLHIMLLYGSGLRVMECVRLRIQDVDFH 150

Query: 185 QSTLRI-QGKGDKIRIV-------PLLPSVRKAILEYYDL-------------------- 216
              LRI QGKG K R+V       PLL   +   L YY+                     
Sbjct: 151 YKALRIWQGKGGKNRVVTLADELLPLLKQQQSVALAYYNKDIHSPGYEGVHLSNSLQRKY 210

Query: 217 --CPFDLNLNIQLPLFR--------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
                D N +   P  +        G +   +N    QR +++  +  G+  + T HTLR
Sbjct: 211 PGAELDFNWHFMFPSHKLSIDPESMGWKRHHINETALQRAVKRSAQDAGIDKNVTCHTLR 270

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           HSFATHLL +G D+R++Q  LGH  + TTQIYT+V  + GG
Sbjct: 271 HSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHVIERGGG 311


>gi|256371427|ref|YP_003109251.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008011|gb|ACU53578.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331]
          Length = 332

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 66/162 (40%), Positives = 88/162 (54%), Gaps = 17/162 (10%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLC 217
           IL L Y  GLR SE  +L   ++      L ++ GKG + R VP+  + R A+  Y  L 
Sbjct: 180 ILELAYATGLRASELCALDRSDLGPGDRWLVVRAGKGGRTRRVPIGEAARTALRAY--LA 237

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
             D +      L  G RG  L+P   QR  R   RYL        H LRH+FATHLL +G
Sbjct: 238 TRDDDAPA---LLLGARGARLSPRGLQRLTR---RYL----DVHPHQLRHAFATHLLDHG 287

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            D+RSIQ +LGH RL+TT+IYT+V+ +     +  +YD THP
Sbjct: 288 ADVRSIQELLGHARLATTEIYTHVSRET----LTRVYDATHP 325


>gi|34540214|ref|NP_904693.1| phage integrase family site specific recombinase [Porphyromonas
           gingivalis W83]
 gi|34396526|gb|AAQ65592.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Porphyromonas gingivalis W83]
          Length = 400

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 125/263 (47%), Gaps = 7/263 (2%)

Query: 41  CDTRQFL-IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
           CD  Q L  + AF++E    +    +      RA++           S++R LS +KSF 
Sbjct: 27  CDYAQDLNRYAAFFSEHTGEVFEPSERDKDVARAWLFSLMEAGQKSSSVQRRLSALKSFY 86

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           KY+ K  +  +S +  +R  KK   LP  +   +    ++ VL     E  +   R+  I
Sbjct: 87  KYMVKIGLIGQSPVRMLRGPKKERPLPVFVPNNE----MEKVLNKPIREDDFEAVRDRLI 142

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           L  LY  GLR SE  +L    + D    +RI GK +K RIVP    ++  I  Y ++   
Sbjct: 143 LETLYEVGLRRSEIATLKDSAVEDKAGCIRIIGKRNKERIVPFGKRLQDMIDNYRNIR-- 200

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
           +  +      F  + G+PL   V  + +R     +      + H LRHSFAT +L++G D
Sbjct: 201 EEKVGKSDFFFVSLDGRPLTGEVVYKIVRTALANVPHLTKRSPHVLRHSFATEMLNHGAD 260

Query: 280 LRSIQSILGHFRLSTTQIYTNVN 302
           L S++ +LGH  LSTT  YT+++
Sbjct: 261 LISVKELLGHDSLSTTVQYTHIS 283


>gi|163851935|ref|YP_001639978.1| tyrosine recombinase XerD [Methylobacterium extorquens PA1]
 gi|163663540|gb|ABY30907.1| tyrosine recombinase XerD [Methylobacterium extorquens PA1]
          Length = 328

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 132/294 (44%), Gaps = 26/294 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L  L  ERG +  TL +Y  D   +L +LA    +    Q        ++RA+I+  
Sbjct: 17  QLFLDMLAAERGAAANTLAAYRRDLDDYLGYLAQGGIDPEEAQA------EQVRAYIASL 70

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   S  R LS I+ F ++L             +   +++  LP+ L+  +    V
Sbjct: 71  EPRGLKASSAARRLSCIRGFHRFLYAEGYAETDPTAPVAAPRRAKGLPKVLSVAE----V 126

Query: 139 DNVLLHTSHETKWIDARNS----------AILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           D  LL T+ E       +            +L LLY  GLR+SE ++L        +  L
Sbjct: 127 DR-LLATARERVEAAGDDRAEARAAARMLCLLELLYATGLRVSELVALPRSAAATRERYL 185

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            ++GKG + R+VPL    R+A+  +  +       +   P         L    F R ++
Sbjct: 186 VVKGKGGRERLVPLTDLAREAMRTH--VAHLTAEGSWLFPAES--ESGHLTRQAFARDLK 241

Query: 249 QLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                 GL     + H LRH+FA+HLL NG DLR +Q +LGH  +STTQIYT+V
Sbjct: 242 TAAAAAGLRTDRVSPHVLRHAFASHLLQNGADLRIVQELLGHADISTTQIYTHV 295


>gi|281425134|ref|ZP_06256047.1| integrase/recombinase XerD [Prevotella oris F0302]
 gi|281400726|gb|EFB31557.1| integrase/recombinase XerD [Prevotella oris F0302]
          Length = 293

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 140/282 (49%), Gaps = 11/282 (3%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L  ER  S+LT+++Y  D R F  F     E  ++ +++       +R ++ +   
Sbjct: 6   FLDYLRFERNRSELTVKNYGDDLRSFEKFFR-DLENPVSWESV---DSDVVRNWMERMMD 61

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     S+ R LS ++SF ++   RK+  +  +  +   KK   LP+ L EK+   L++ 
Sbjct: 62  EGNNAASINRRLSALRSFYRFALSRKLVDKDPVHGITGPKKGKPLPQFLKEKEMDRLLER 121

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                S E    D R+ AI+   Y  G+R+SE   L  + +   +  L++ GK +K RI+
Sbjct: 122 KCWTRSFE----DVRDRAIIMTFYETGIRLSELTGLDDKMVDFAEYQLKVTGKRNKQRII 177

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG-VFQRYIRQLRRYLGLPLS 259
           P    +   + +Y +    +++  +   LF    G+ ++   V +R  R L +   L   
Sbjct: 178 PFGEELCTTLRDYMECRDREVD-RLSEALFVTDEGQRMSASLVRERVKRSLSKVCTLN-K 235

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            + H LRH+FAT +L++   + S++ +LGH  LSTT+IYT+ 
Sbjct: 236 RSPHVLRHTFATAMLNHKAGIESVKKLLGHESLSTTEIYTHT 277


>gi|309805721|ref|ZP_07699761.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV
           09V1-c]
 gi|308164974|gb|EFO67217.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV
           09V1-c]
          Length = 300

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 146/304 (48%), Gaps = 22/304 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N+L+N   ER  S  T ++Y  D  +      F+ E    I  I+ LS  +I  FI    
Sbjct: 6   NYLKN---ERNYSINTCKAYMDDLSEAR---TFFVENGGFIDWIK-LSSRDIEIFIQYLA 58

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALNEKQALTL 137
            +K    +  R +S ++SF ++L KR I       ++++R   K   LP  L   + + +
Sbjct: 59  QKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGEHKK--LPEFLYNDEMVKV 116

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           + ++       T  +  RN A+L L Y  G+R+SE  +L  + I  + + + + GKG+K 
Sbjct: 117 LKSI-----STTTPLGLRNMALLELFYATGMRVSEIANLKLEQIDFELNLILVHGKGNKD 171

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R V      + A+  Y       L L+      +F    G  +     +  I+ +    G
Sbjct: 172 RYVAFGEEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNRITSRGLEYIIKNIFLNAG 231

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  S   H LRH+FAT +L+NG DLR++Q +LGH  +STTQIYT+V  ++    + +IY 
Sbjct: 232 VSASVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQH----LCDIYH 287

Query: 316 QTHP 319
           +  P
Sbjct: 288 KYFP 291


>gi|15891311|ref|NP_356983.1| site-specific tyrosine recombinase XerD [Agrobacterium tumefaciens
           str. C58]
 gi|34222927|sp|Q8U9U6|XERD_AGRT5 RecName: Full=Tyrosine recombinase xerD
 gi|15159692|gb|AAK89768.1| site-specific recombinase [Agrobacterium tumefaciens str. C58]
          Length = 331

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 145/323 (44%), Gaps = 29/323 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L+ +  ERG +  TL SYE D      FL    +     QT       ++ A+++  
Sbjct: 15  ESFLEMMSAERGAAANTLSSYEHDLADLREFLGRRGQSLTEAQT------PDLSAYLTHL 68

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R LS ++ F ++L    +  +     +   +K  +LP+ ++      L+
Sbjct: 69  AAQGFAATSQARRLSSMRQFYRFLYSEGLRGDDPTGIIDAPRKGLALPKTMSVADVNRLL 128

Query: 139 DNVLLHTSHETKWIDAR--NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
                  + E     AR     +L LLY  G+R+SE +SL  + +  +   L I+GKG+K
Sbjct: 129 GLAAQEAATEGPGQLARIRMHLLLELLYATGMRVSELVSLPVKVLRQEGRFLMIRGKGNK 188

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLN-------------IQLPLFRGIRGKP--LNPG 241
            R+V LL       +E Y+     L+                + P       K   L   
Sbjct: 189 DRMV-LLSRAAIEAMEKYEAGRKALSQEKSKAAASQKKTDTAESPWLFPSNSKEGHLPRQ 247

Query: 242 VFQRYIRQLRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           VF R ++ +    GL  S  + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+
Sbjct: 248 VFARDLKDIAIRAGLTASAVSPHVLRHAFASHLLQNGADLRAVQELLGHSDISTTQIYTH 307

Query: 301 VNSKNGGDWMMEIYDQTHPSITQ 323
           V  +     + E+    HP   Q
Sbjct: 308 VLEER----LQELVQTHHPLAKQ 326


>gi|222149986|ref|YP_002550943.1| site-specific tyrosine recombinase XerD [Agrobacterium vitis S4]
 gi|221736968|gb|ACM37931.1| tyrosine recombinase XerD [Agrobacterium vitis S4]
          Length = 332

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 155/339 (45%), Gaps = 47/339 (13%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ +  ERG +  TL SYE D      FLA     K+++      +  ++ A+++  
Sbjct: 10  EAFLEMMSAERGAAGNTLSSYERDLEDLHGFLA---TRKVSVMAA---TSDDLSAYLADL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S  R LS ++ F K+L    +  +     +   KK   LP+ L+    +  V
Sbjct: 64  GHRGFEASSQARRLSALRQFYKFLYAEGLRGDDPTSILDTPKKGRPLPKTLS----IADV 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLL-------YGCGLRISEALSLTPQNIMDDQST-LRI 190
           D  LL  +     +D  +              Y  G+R+SE +SL P N++  +   L I
Sbjct: 120 DK-LLSLAQAEAALDGPDRLQRLRRLALLELLYATGMRVSELVSL-PANVLAQEGRFLVI 177

Query: 191 QGKGDKIRIVPLLPSVRKAI--------LEYYDLCPFDLNLNIQ----LPLFRGI----- 233
           +GKG+K R+VPL  S   A+        +E  +  P     + Q    L    GI     
Sbjct: 178 RGKGNKERLVPLSRSAIAAMQVYAQAKEIEQAEKPPSKKTASKQTESKLGKSSGIGFLFP 237

Query: 234 ---RGKPLNPGVFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
              R   L   VF R ++ L    GL   + + H LRH+FA+HLL NG DLR +Q +LGH
Sbjct: 238 AASREGYLPRQVFARELKDLAIRAGLSGDAVSPHVLRHAFASHLLENGADLRVVQELLGH 297

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
             +STTQIYT+V  +      ++I  +TH  +  K +KN
Sbjct: 298 SDISTTQIYTHVLEER-----LQILVETHHPLA-KHRKN 330


>gi|27804830|gb|AAO22873.1| integrase [Myxococcus xanthus]
          Length = 209

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/179 (35%), Positives = 90/179 (50%), Gaps = 5/179 (2%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           LL    E      R+ A+L +LY  GLR+SE   L   ++      L  +GKG K R+VP
Sbjct: 18  LLAAPDERTSTGVRDKAMLEVLYATGLRVSELCGLGINDVQLTAGYLVAKGKGAKERLVP 77

Query: 202 LLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           L     + +  Y  +  P  L       LF   RG       F + +++     G+    
Sbjct: 78  LGSVAIEKVQAYLAESRPAVLGRRKSQALFVTPRGSGFTRQGFWKLLKRYALKAGILKPL 137

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           + H LRHSFATHL+  G DLR++Q +LGH  L+TTQIYT+VN+      +  +YD+ HP
Sbjct: 138 SPHKLRHSFATHLVERGADLRAVQQMLGHADLATTQIYTHVNAAR----LRSVYDEFHP 192


>gi|293372135|ref|ZP_06618526.1| tyrosine recombinase XerC [Bacteroides ovatus SD CMC 3f]
 gi|292632927|gb|EFF51514.1| tyrosine recombinase XerC [Bacteroides ovatus SD CMC 3f]
          Length = 293

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 148/301 (49%), Gaps = 13/301 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  L+ ER  S+ T+ +Y  D +Q    L  + +E+       ++    IR +I   
Sbjct: 4   ESFLDYLQYERNYSEKTVLAYGEDIKQ----LQEFAQEEYGKFDPLEVEAELIREWIVSL 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S+ R LS +++F KYL ++  TT   +  ++  K    LP  L E +   L+
Sbjct: 60  MDKGYTSTSVNRKLSSLRTFYKYLIRQGETTIDPLRKIKGPKNKKPLPVFLKENEMNRLL 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D+    T     +   R+  ++ + Y  G+R+SE + L  +++    S L++ GK +K R
Sbjct: 120 DD----TDFGQGFKGCRDRLVIEVFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQR 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++P    +++ +LEY ++    +    +    R    +     V+    R L + + L  
Sbjct: 176 LIPFGDELQELMLEYINVRNETIPERSEAFFIRENGERLYKNLVYNLVKRNLSKVVTLK- 234

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FAT +L+N  +L +++ +LGH  ++TT+IYT+   +     + ++Y Q H
Sbjct: 235 KKSPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIYTHATFEE----LKKVYKQAH 290

Query: 319 P 319
           P
Sbjct: 291 P 291


>gi|13541094|ref|NP_110782.1| integrase/recombinase [Thermoplasma volcanium GSS1]
 gi|14324479|dbj|BAB59407.1| integrase / recombinase [Thermoplasma volcanium GSS1]
          Length = 283

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 144/288 (50%), Gaps = 33/288 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N++  +  ER  SK T++ Y+    +FL F+     E   +   R  ++   +A  SK 
Sbjct: 10  ENFVSYMVGERK-SKYTIKEYKFLVSKFLAFVGKTPAEVTPMDIERYKTFLASKAHYSKA 68

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S   ++  IK F K L  R        +N+   ++S  +P  LNE++A    
Sbjct: 69  --------SQYLAIKAIKLFYKSLDLR------YPVNLTPPRRSMHMPVYLNEEEA---- 110

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKI 197
            + LL  S ++     + SA++ +L   G+R+ E  +L   ++   +  + ++ GKGDK 
Sbjct: 111 -SRLLSASKKS----VKYSAVISVLAYTGIRVGELCNLRIGDVDMQEGIIYVKSGKGDKD 165

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYL 254
           RIV +      A+ EY      +  ++++ P   LF   +    +P   +R +++L +  
Sbjct: 166 RIVVMPNECVSALKEY-----LNWRISVETPHDFLFISNKKSRYDPSTVERMVKRLSQEA 220

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           G+    T H LRH+FAT +L NGGD+R IQ ILGH  ++TTQIYT+++
Sbjct: 221 GINKRVTPHVLRHTFATSVLRNGGDIRFIQQILGHSSVATTQIYTHLD 268


>gi|299065844|emb|CBJ37023.1| site-specific tyrosine recombinase [Ralstonia solanacearum CMR15]
          Length = 311

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 142/306 (46%), Gaps = 21/306 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +   L +E GL++ TL +Y  D   +  +LA         + + Q    ++  + + R
Sbjct: 20  QRFCDALWLEDGLARNTLDAYRRDLTLYAQWLAGRG------KALDQTEDADLSDYFAAR 73

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +   + +R  +  K F ++  +  +        +   K+   +P+ L+E Q   L+
Sbjct: 74  HEDSLASTANRRR-TVFKRFFQWALREHVVNADPTRLLPTAKQPPRVPQTLSEAQVEALI 132

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKI 197
               +        +  R+ A++ L+Y  GLR+SE ++L    +  ++  +R I GKG K 
Sbjct: 133 AAPDVDAP-----LGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEGVVRVIGGKGGKD 187

Query: 198 RIVPLLPS----VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           R+VP        +R+ + + +      L       LF   RG  +    F   I++  + 
Sbjct: 188 RLVPFGAEAGDWLRRYLQDGHKGRTALLGQRTADALFVTARGDGMTRQAFWYLIKRYAQR 247

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  +
Sbjct: 248 ADIHAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARER----LRTL 303

Query: 314 YDQTHP 319
           + Q HP
Sbjct: 304 HAQHHP 309


>gi|213422078|ref|ZP_03355144.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 166

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 97/168 (57%), Gaps = 8/168 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG+K R+VPL       +  Y 
Sbjct: 2   RDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYL 61

Query: 215 DLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFAT 271
           +   P+ LN ++I + LF   R + +    F   I+      G+     + H LRH+FAT
Sbjct: 62  EHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFAT 120

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q HP
Sbjct: 121 HLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQHHP 164


>gi|213691813|ref|YP_002322399.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|254799327|sp|B7GQE1|XERC_BIFLI RecName: Full=Tyrosine recombinase xerC
 gi|213523274|gb|ACJ52021.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320457907|dbj|BAJ68528.1| tyrosine recombinase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 355

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 143/337 (42%), Gaps = 62/337 (18%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +++  L+  RGLS  TL++Y  D    L        E   +  + +++  ++R++++   
Sbjct: 12  SFVSYLKSNRGLSANTLKAYRADLTACLHLF-----ELRGVTDLNEITLDDLRSWMAVE- 65

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           ++     S+ R    ++ F  +  +  +T       +      ++LP  L E QA  L+D
Sbjct: 66  SRDHARSSMARKTVAVRGFFAWAYEHGLTATDPAATLMTPSIPSTLPAVLTESQAEQLLD 125

Query: 140 NVLLHTSHETKWID---------------------------------------------- 153
            V  H     ++ D                                              
Sbjct: 126 -VAEHAVATNQYKDDGGAAAASGSGKAAGKTADKSADTVNRSEAPARADKRDNARVTAES 184

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            RN+AIL LLY  G+R++E +S+   +I     T+++ GKG+K R+VP     ++A+  +
Sbjct: 185 QRNAAILELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRALETW 244

Query: 214 YD--------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            +             +       LF G RG  ++  + +  + +  R  G+P   + H L
Sbjct: 245 LEQGRPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVP-DISPHAL 303

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           RHS ATH+L  G DLR +Q +LGH  L TTQ YT+V+
Sbjct: 304 RHSAATHILDGGADLREVQEMLGHSSLKTTQRYTHVS 340


>gi|240139059|ref|YP_002963534.1| Tyrosine recombinase xerD [Methylobacterium extorquens AM1]
 gi|240009031|gb|ACS40257.1| Tyrosine recombinase xerD [Methylobacterium extorquens AM1]
          Length = 328

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 135/301 (44%), Gaps = 40/301 (13%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L  L  ERG +  TL +Y  D   +L +LA   E  I  +   +    ++RA+I+  
Sbjct: 17  QLFLDMLAAERGAAANTLAAYRRDLDDYLGYLA---EGGIDPE---EAQAEQVRAYIASL 70

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   S  R LS I+ F ++L     +       +   +++  LP+ L+  +    V
Sbjct: 71  EPRGLKASSAARRLSCIRGFHRFLYAEGYSETDPTAPVAAPRRAKGLPKVLSVAE----V 126

Query: 139 DNVLLHTSHETKWIDARNS----------AILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           D  LL T+ E       +            +L LLY  GLR+SE ++L        +  L
Sbjct: 127 DR-LLATARERVEAAGDDRAEARAAARMLCLLELLYATGLRVSELVALPRSAAATRERYL 185

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYD--------LCPFDLNLNIQLPLFRGIRGKPLNP 240
            ++GKG + R+VPL    R+A+  +          L P +        L R    + L  
Sbjct: 186 VVKGKGGRERLVPLTDLAREAMRTHVAHLTAEGSWLFPAESESGH---LTRQAFARDLKT 242

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                 +R  R         + H LRH+FA+HLL NG DLR +Q +LGH  +STTQIYT+
Sbjct: 243 AAAAADLRTDR--------VSPHVLRHAFASHLLQNGADLRIVQELLGHADISTTQIYTH 294

Query: 301 V 301
           V
Sbjct: 295 V 295


>gi|15610031|ref|NP_217410.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           H37Rv]
 gi|31794070|ref|NP_856563.1| site-specific tyrosine recombinase XerC [Mycobacterium bovis
           AF2122/97]
 gi|121638775|ref|YP_978999.1| site-specific tyrosine recombinase XerC [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148662738|ref|YP_001284261.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           H37Ra]
 gi|148824083|ref|YP_001288837.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           F11]
 gi|215404868|ref|ZP_03417049.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           02_1987]
 gi|215431842|ref|ZP_03429761.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           EAS054]
 gi|219558917|ref|ZP_03537993.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           T17]
 gi|224991267|ref|YP_002645956.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253798018|ref|YP_003031019.1| integrase xerC [Mycobacterium tuberculosis KZN 1435]
 gi|254232988|ref|ZP_04926315.1| integrase/recombinase xerC [Mycobacterium tuberculosis C]
 gi|254365534|ref|ZP_04981579.1| integrase/recombinase xerC [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254551966|ref|ZP_05142413.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260187913|ref|ZP_05765387.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           CPHL_A]
 gi|260202029|ref|ZP_05769520.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           T46]
 gi|260206212|ref|ZP_05773703.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           K85]
 gi|289444449|ref|ZP_06434193.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T46]
 gi|289448559|ref|ZP_06438303.1| integrase xerC [Mycobacterium tuberculosis CPHL_A]
 gi|289553317|ref|ZP_06442527.1| integrase xerC [Mycobacterium tuberculosis KZN 605]
 gi|289571083|ref|ZP_06451310.1| integrase xerC [Mycobacterium tuberculosis T17]
 gi|289575599|ref|ZP_06455826.1| integrase xerC [Mycobacterium tuberculosis K85]
 gi|289746693|ref|ZP_06506071.1| tyrosine recombinase XerC [Mycobacterium tuberculosis 02_1987]
 gi|289755006|ref|ZP_06514384.1| tyrosine recombinase XerC [Mycobacterium tuberculosis EAS054]
 gi|294994010|ref|ZP_06799701.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           210]
 gi|297635512|ref|ZP_06953292.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           KZN 4207]
 gi|297732511|ref|ZP_06961629.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           KZN R506]
 gi|306777182|ref|ZP_07415519.1| integrase xerC [Mycobacterium tuberculosis SUMu001]
 gi|306781089|ref|ZP_07419426.1| integrase xerC [Mycobacterium tuberculosis SUMu002]
 gi|306785729|ref|ZP_07424051.1| integrase xerC [Mycobacterium tuberculosis SUMu003]
 gi|306789768|ref|ZP_07428090.1| integrase xerC [Mycobacterium tuberculosis SUMu004]
 gi|306794582|ref|ZP_07432884.1| integrase xerC [Mycobacterium tuberculosis SUMu005]
 gi|306798823|ref|ZP_07437125.1| integrase xerC [Mycobacterium tuberculosis SUMu006]
 gi|306804671|ref|ZP_07441339.1| integrase xerC [Mycobacterium tuberculosis SUMu008]
 gi|306808863|ref|ZP_07445531.1| integrase xerC [Mycobacterium tuberculosis SUMu007]
 gi|306968962|ref|ZP_07481623.1| integrase xerC [Mycobacterium tuberculosis SUMu009]
 gi|306973299|ref|ZP_07485960.1| integrase xerC [Mycobacterium tuberculosis SUMu010]
 gi|307081007|ref|ZP_07490177.1| integrase xerC [Mycobacterium tuberculosis SUMu011]
 gi|307085605|ref|ZP_07494718.1| integrase xerC [Mycobacterium tuberculosis SUMu012]
 gi|313659843|ref|ZP_07816723.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           KZN V2475]
 gi|54039881|sp|P67629|XERC_MYCBO RecName: Full=Tyrosine recombinase xerC
 gi|54042778|sp|P67628|XERC_MYCTU RecName: Full=Tyrosine recombinase xerC
 gi|166918887|sp|A1KMN8|XERC_MYCBP RecName: Full=Tyrosine recombinase xerC
 gi|166918891|sp|A5U6P9|XERC_MYCTA RecName: Full=Tyrosine recombinase xerC
 gi|254799347|sp|C1AG09|XERC_MYCBT RecName: Full=Tyrosine recombinase xerC
 gi|3250705|emb|CAA98378.1| PROBABLE INTEGRASE/RECOMBINASE XERC [Mycobacterium tuberculosis
           H37Rv]
 gi|31619665|emb|CAD96605.1| PROBABLE INTEGRASE/RECOMBINASE XERC [Mycobacterium bovis AF2122/97]
 gi|121494423|emb|CAL72904.1| Probable integrase/recombinase xerC [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124602047|gb|EAY61057.1| integrase/recombinase xerC [Mycobacterium tuberculosis C]
 gi|134151047|gb|EBA43092.1| integrase/recombinase xerC [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506890|gb|ABQ74699.1| tyrosine recombinase [Mycobacterium tuberculosis H37Ra]
 gi|148722610|gb|ABR07235.1| integrase/recombinase xerC [Mycobacterium tuberculosis F11]
 gi|224774382|dbj|BAH27188.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253319521|gb|ACT24124.1| integrase xerC [Mycobacterium tuberculosis KZN 1435]
 gi|289417368|gb|EFD14608.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T46]
 gi|289421517|gb|EFD18718.1| integrase xerC [Mycobacterium tuberculosis CPHL_A]
 gi|289437949|gb|EFD20442.1| integrase xerC [Mycobacterium tuberculosis KZN 605]
 gi|289540030|gb|EFD44608.1| integrase xerC [Mycobacterium tuberculosis K85]
 gi|289544837|gb|EFD48485.1| integrase xerC [Mycobacterium tuberculosis T17]
 gi|289687221|gb|EFD54709.1| tyrosine recombinase XerC [Mycobacterium tuberculosis 02_1987]
 gi|289695593|gb|EFD63022.1| tyrosine recombinase XerC [Mycobacterium tuberculosis EAS054]
 gi|308214464|gb|EFO73863.1| integrase xerC [Mycobacterium tuberculosis SUMu001]
 gi|308326075|gb|EFP14926.1| integrase xerC [Mycobacterium tuberculosis SUMu002]
 gi|308329639|gb|EFP18490.1| integrase xerC [Mycobacterium tuberculosis SUMu003]
 gi|308333778|gb|EFP22629.1| integrase xerC [Mycobacterium tuberculosis SUMu004]
 gi|308337172|gb|EFP26023.1| integrase xerC [Mycobacterium tuberculosis SUMu005]
 gi|308340939|gb|EFP29790.1| integrase xerC [Mycobacterium tuberculosis SUMu006]
 gi|308344815|gb|EFP33666.1| integrase xerC [Mycobacterium tuberculosis SUMu007]
 gi|308348763|gb|EFP37614.1| integrase xerC [Mycobacterium tuberculosis SUMu008]
 gi|308353464|gb|EFP42315.1| integrase xerC [Mycobacterium tuberculosis SUMu009]
 gi|308357329|gb|EFP46180.1| integrase xerC [Mycobacterium tuberculosis SUMu010]
 gi|308361213|gb|EFP50064.1| integrase xerC [Mycobacterium tuberculosis SUMu011]
 gi|308364867|gb|EFP53718.1| integrase xerC [Mycobacterium tuberculosis SUMu012]
 gi|323718504|gb|EGB27675.1| integrase xerC [Mycobacterium tuberculosis CDC1551A]
 gi|326904508|gb|EGE51441.1| integrase xerC [Mycobacterium tuberculosis W-148]
 gi|328457792|gb|AEB03215.1| integrase xerC [Mycobacterium tuberculosis KZN 4207]
          Length = 298

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 135/304 (44%), Gaps = 28/304 (9%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L ++ G S  T ++Y  D R    FLA          ++  L+ + +R++++        
Sbjct: 12  LALQCGRSVHTRRAYLGDLRSLFAFLADRGS------SLDALTLSVLRSWLAATAGAGAA 65

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +L R  S +K+F  +  +R +        ++  K   +LP  L + QAL  +      
Sbjct: 66  RTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAM-AAAES 124

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            + +   +  R+  I+ LLY  G+R+SE   L   +I      +R+ GKG+K R VP   
Sbjct: 125 GAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVPFGQ 184

Query: 205 SVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL--------G 255
               A+  +  D     +       L  G RG+ L+       +RQ R  +        G
Sbjct: 185 PAADALHAWLVDGRRALVTAESGHALLLGARGRRLD-------VRQARTAVHQTVAAVDG 237

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            P     H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V        +  +++
Sbjct: 238 AP-DMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVAR----LRAVHE 292

Query: 316 QTHP 319
           + HP
Sbjct: 293 RAHP 296


>gi|312793099|ref|YP_004026022.1| tyrosine recombinase xerd [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180239|gb|ADQ40409.1| tyrosine recombinase XerD [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 291

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 141/297 (47%), Gaps = 18/297 (6%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           +L+ +   S+ T+ SY  D ++++ FL     + I I+       T I   IS +++ K 
Sbjct: 10  HLQRQNRFSQNTISSYLRDAKKYIEFL-----DNIKIKLENTSQATLIAYIISMQKSGK- 63

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
            + ++ R++  +K F  +LK + I     I  +   K   S P+ L   +        LL
Sbjct: 64  SNSTIARAIVSLKVFYDFLKTQNIVDIGKI-EIEPPKLEKSPPQILTRDEV-----EKLL 117

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
               E      R+ A+L LLY  G+R+SE ++L   +I  +   +  + K  + R++P+ 
Sbjct: 118 SCPKEDDIKGIRDKAMLELLYATGIRVSELINLNLDDINLEHGYIICKNK-KRDRVIPIG 176

Query: 204 PSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
                A+  Y     P+      +  LF    G+ +    F + ++   +  G+    T 
Sbjct: 177 SYAISAVERYLRHSRPYLAKNKDEEALFLNFNGERMTRQGFWKIVKFYAQSAGIDKEITP 236

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           H LRHSFATHL+ NG D+R++Q +LGH  +STTQ Y  V +      + E+Y +THP
Sbjct: 237 HVLRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVK----LKEVYQKTHP 289


>gi|319900908|ref|YP_004160636.1| tyrosine recombinase XerC subunit [Bacteroides helcogenes P 36-108]
 gi|319415939|gb|ADV43050.1| tyrosine recombinase XerC subunit [Bacteroides helcogenes P 36-108]
          Length = 294

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 147/317 (46%), Gaps = 45/317 (14%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L  L  ER  S+ T++ Y  D    ++ L  + EE +   T   +    +R +I+  
Sbjct: 5   DSFLDYLLYERNYSEGTVKYYRAD----ILELQKFGEEMLGDLTPSDVDAELVREWITFL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     ++ R LS I+++ ++L +R +     +  +   KK   LP  L + +   L+
Sbjct: 61  MDKGCASNTVNRKLSSIRTYYRFLLQRGMVAMDPLQKIVGPKKKKPLPTFLRQGEMDRLL 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D++      +      R+  I+ + Y  G+R+SE + L  +++    S +++ GK +K R
Sbjct: 121 DDIDFGEGFKG----CRDRMIIEMFYATGMRLSELIGLNDKDVDFSASLIKVTGKRNKQR 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK--PLNPGVF------QRYIRQL 250
           ++P                 FD  L + +  +  +R +  P+    F      +R  R +
Sbjct: 177 LIP-----------------FDKELELSMRKYVNVRNEAIPIRTDAFFVRKNGRRLYRSI 219

Query: 251 RRYL---GLPLSTTA-----HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             YL    L    T      H LRH+FAT +L+NG DL SI+ +LGH  L+TT+IYT+  
Sbjct: 220 VEYLVKRNLSKVVTVKKRSPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEIYTHTT 279

Query: 303 SKNGGDWMMEIYDQTHP 319
            +     + ++Y+Q HP
Sbjct: 280 FEE----LKKVYNQAHP 292


>gi|300813238|ref|ZP_07093603.1| site-specific tyrosine recombinase XerC [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300512645|gb|EFK39780.1| site-specific tyrosine recombinase XerC [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 326

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 149/302 (49%), Gaps = 26/302 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA-----FYTE---------EKITIQTIR 64
            ++L  L   +G S+ T++ Y  D R FL ++      FY           +K+    ++
Sbjct: 8   DDFLDYLSSSKGHSENTIKEYYYDLRIFLRYMILRKTNFYDNVKSLDEVDIDKVDEDLLK 67

Query: 65  QLSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK-S 122
            ++  +I A+IS   + +K+ ++S  R +S +++F  YL  +    + N     +L K  
Sbjct: 68  AINKQDIYAYISYLDKERKLSNKSKYRKISAVRAFFDYLTNKIDLLKINPSESVDLPKIE 127

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            SLP  LN  QA+ L+  +    S E  +   R+  I  L   CG+R+SE   +   +I 
Sbjct: 128 KSLPIYLNLDQAINLLKTI--ENSKENDFYRTRDYCICTLFLNCGMRLSELSQINISSIK 185

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           D+   +R+ GKG+K R + L  +   +I  Y    P  ++ +    LF  +R K ++   
Sbjct: 186 DEM--IRVLGKGNKERQIYLNNACIYSIKNYLMHRP-KVSTD---ALFISMRKKRMSNRS 239

Query: 243 FQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTN 300
            Q  I +  R  GL P   T H LRH+ AT +   G  D++S+Q ILGH  ++TTQIYT+
Sbjct: 240 IQHMIEKHIRNSGLDPNKYTVHKLRHTAATLMYQYGNADIKSLQEILGHESITTTQIYTH 299

Query: 301 VN 302
           VN
Sbjct: 300 VN 301


>gi|254452706|ref|ZP_05066143.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198267112|gb|EDY91382.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 320

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 113/218 (51%), Gaps = 18/218 (8%)

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           ++++G+K  L+   +R       +  + +LK+   +P  L++K+    +  +L       
Sbjct: 91  QTMTGVKFLLRVTLRR----HDLVAEIFHLKEPVKVPLVLSKKE----IKRILAMAPS-- 140

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRK 208
             + AR   +L L YGCG+R  E + L   +I  DQ  +RI Q KG K RIV L   +  
Sbjct: 141 --LKAR--VMLSLAYGCGMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDILS 196

Query: 209 AILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            + +++   P   + ++  P   LF   RGK L+     R  ++  R  G+    T HTL
Sbjct: 197 LLRDWWKERPTGQDKDVPAPERVLFPSYRGKHLSARQISRLFKETAREAGITKPVTLHTL 256

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           RHSFATHLL  G D+R IQ++LGH +L+TT  Y +V +
Sbjct: 257 RHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVAT 294


>gi|282881982|ref|ZP_06290623.1| tyrosine recombinase XerC [Peptoniphilus lacrimalis 315-B]
 gi|281298012|gb|EFA90467.1| tyrosine recombinase XerC [Peptoniphilus lacrimalis 315-B]
          Length = 326

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 149/302 (49%), Gaps = 26/302 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA-----FYTE---------EKITIQTIR 64
            ++L  L   +G S+ T++ Y  D R FL ++      FY           +K+    ++
Sbjct: 8   DDFLDYLSSSKGHSENTIKEYYYDLRIFLRYMIIRKTNFYDNVKSLDGVDIDKVDEDLLK 67

Query: 65  QLSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK-S 122
            ++  +I A+IS   + +K+ ++S  R +S +++F  YL  +    + N     +L K  
Sbjct: 68  AINKQDIYAYISYLDKERKLSNKSKYRKISAVRAFFDYLTNKIDLLKINPSESVDLPKIE 127

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            SLP  LN  QA+ L+  +    S E  +   R+  I  L   CG+R+SE   +   +I 
Sbjct: 128 KSLPIYLNLDQAINLLKTI--ENSKENDFYRTRDYCICTLFLNCGMRLSELSQINISSIK 185

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           D+   +R+ GKG+K R + L  +   +I  Y    P  ++ +    LF  +R K ++   
Sbjct: 186 DEM--IRVLGKGNKERQIYLNNACIYSIKNYLMHRP-KVSTD---ALFISMRKKRMSNRS 239

Query: 243 FQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTN 300
            Q  I +  R  GL P   T H LRH+ AT +   G  D++S+Q ILGH  ++TTQIYT+
Sbjct: 240 IQHMIEKHIRNSGLDPNKYTVHKLRHTAATLMYQYGNADIKSLQEILGHESITTTQIYTH 299

Query: 301 VN 302
           VN
Sbjct: 300 VN 301


>gi|15842437|ref|NP_337474.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           CDC1551]
 gi|13882740|gb|AAK47288.1| tyrosine recombinase XerC [Mycobacterium tuberculosis CDC1551]
          Length = 315

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 135/304 (44%), Gaps = 28/304 (9%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L ++ G S  T ++Y  D R    FLA          ++  L+ + +R++++        
Sbjct: 29  LALQCGRSVHTRRAYLGDLRSLFAFLADRGS------SLDALTLSVLRSWLAATAGAGAA 82

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +L R  S +K+F  +  +R +        ++  K   +LP  L + QAL  +      
Sbjct: 83  RTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAM-AAAES 141

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            + +   +  R+  I+ LLY  G+R+SE   L   +I      +R+ GKG+K R VP   
Sbjct: 142 GAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVPFGQ 201

Query: 205 SVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL--------G 255
               A+  +  D     +       L  G RG+ L+       +RQ R  +        G
Sbjct: 202 PAADALHAWLVDGRRALVTAESGHALLLGARGRRLD-------VRQARTAVHQTVAAVDG 254

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            P     H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V        +  +++
Sbjct: 255 AP-DMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVAR----LRAVHE 309

Query: 316 QTHP 319
           + HP
Sbjct: 310 RAHP 313


>gi|312127184|ref|YP_003992058.1| tyrosine recombinase xerd [Caldicellulosiruptor hydrothermalis 108]
 gi|311777203|gb|ADQ06689.1| tyrosine recombinase XerD [Caldicellulosiruptor hydrothermalis 108]
          Length = 291

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 142/297 (47%), Gaps = 18/297 (6%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           +L+ +   S+ T+ SY  D ++++ FL     + I I+       T I   IS +++ K 
Sbjct: 10  HLQRQNRFSQNTISSYLRDAKKYIEFL-----DNIKIKLENTSQATLIAYIISMQKSGK- 63

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
            + ++ R++  +K F  +LK + I     I  +   K   S P+ L   +        LL
Sbjct: 64  SNSTIARAIVSLKVFYDFLKIQNIVDIGKI-EIEPPKLEKSPPQILTRDEV-----EKLL 117

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
               E      R+ A+L LLY  G+R+SE ++L   +I  +   +  + K  + R++P+ 
Sbjct: 118 SCPKEDDIKGIRDKAMLELLYATGIRVSELINLNLDDINLEHGYIICKNK-KRDRVIPIG 176

Query: 204 PSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
                A+ +Y     P+      +  LF    G+ +    F + ++   +  G+    T 
Sbjct: 177 SYAISAVEKYLRHSRPYLAKNKDEEALFLNFNGERMTRQGFWKIVKFYAQSAGIDKEITP 236

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           H LRHSFATHL+ NG D+R++Q +LGH  +STTQ Y  V +      + E+Y +THP
Sbjct: 237 HVLRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVK----LKEVYQKTHP 289


>gi|332882132|ref|ZP_08449766.1| putative tyrosine recombinase XerC [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332679883|gb|EGJ52846.1| putative tyrosine recombinase XerC [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 293

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 146/304 (48%), Gaps = 19/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L +ER  S  T++ Y  D   F    ++Y +   T+ +   +    +R ++   
Sbjct: 4   EAFLEYLTLERNYSLRTVEEYRDDLNAFE---SYYKKVDSTL-SWETIDGDVVRDWMVSM 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   ++ R LS +++F +YL KR       + N++  KK   LP  L E +   L+
Sbjct: 60  MEAGRTATTVNRRLSALRTFYRYLLKRDWIKVDPVRNIQGPKKKKPLPVFLKESEMDRLL 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D     +     ++  R+  I+   Y  G+R+SE   L  Q++      +++ GK +K R
Sbjct: 120 DGEFFGSD----FLGKRDKLIVNTFYVTGVRLSELTGLNNQDVDLWGGVIKVTGKRNKQR 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVP    + +A+L  Y      L +     +F   +G+ L     +  +R    YLG+  
Sbjct: 176 IVPFGREL-EALLRTYLDEKSSLGMEDGGAMFVDEKGERLTNVKVRNLVRH---YLGMVT 231

Query: 259 ST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + H LRH+FAT +L++  DL S++ +LGH  +STT+IYT+   +     + E+Y+
Sbjct: 232 TQKKRSPHVLRHTFATSMLNHHADLESLKELLGHESISTTEIYTHTTFEE----LKEMYN 287

Query: 316 QTHP 319
           Q HP
Sbjct: 288 QAHP 291


>gi|319949186|ref|ZP_08023275.1| site-specific tyrosine recombinase XerD [Dietzia cinnamea P4]
 gi|319437172|gb|EFV92203.1| site-specific tyrosine recombinase XerD [Dietzia cinnamea P4]
          Length = 316

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 142/309 (45%), Gaps = 15/309 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L +L +E+G S  TL +Y  D  ++   LA    + +T  T  +    + RA ++  
Sbjct: 12  REYLDHLAVEKGASAHTLAAYRRDLDRYRRHLAAVGVDDLTAVT--EAHVEDFRARLATG 69

Query: 79  RTQK----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
              +    +   S+ R+L+ ++   ++  +  +T       +   +    LP+AL   + 
Sbjct: 70  DPDEGRPPLAPSSVARTLAAVRGLHRFATRDGVTDTDVAAAVAPPRPPRRLPKALPLDRM 129

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM----DDQSTLRI 190
           + +++     T  +T     R+ A+L LLY  G R +E + L   ++      D  T+ +
Sbjct: 130 IAVIEAAG-DTGVDTDPARLRDRAMLELLYATGARAAELIGLDVDDLDGLDHPDGGTVIL 188

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +GKG K R+VP+     +A+  Y       L       LF   RG  ++       +   
Sbjct: 189 RGKGGKERLVPVGRPACEAVGAYLTRARPALAKRGGPALFLNTRGGRISRQTLWNVVSAA 248

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+    + H+ RHSFATHLL  G D+R +Q +LGH  ++TTQ+YT V      D +
Sbjct: 249 AARAGVTQEVSPHSFRHSFATHLLDGGADIRVVQELLGHASVTTTQVYTLVTV----DTL 304

Query: 311 MEIYDQTHP 319
            E++ + HP
Sbjct: 305 REVWAECHP 313


>gi|89068929|ref|ZP_01156311.1| tyrosine recombinase XerD [Oceanicola granulosus HTCC2516]
 gi|89045510|gb|EAR51574.1| tyrosine recombinase XerD [Oceanicola granulosus HTCC2516]
          Length = 315

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 108/221 (48%), Gaps = 15/221 (6%)

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R LS IK   ++  +     ++  + +    +   LP+ L+ ++    VD  LL  +  T
Sbjct: 78  RRLSAIKQLYRFAFEEGWRADNPAIRIAGPGREKRLPKTLSVEE----VDR-LLAAARTT 132

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
                RN+ ++ LLY  G+R+SE +SL       D   L ++GKG K R+VPL    R A
Sbjct: 133 PRDAVRNTCLVELLYATGMRVSELVSLPVAATRGDPRMLLVRGKGGKERMVPLSQGARAA 192

Query: 210 ILEYYDLCPFDLNLNIQLP------LF--RGIRGKPLNPGVFQRYIRQLRRYLGL-PLST 260
           + E+                     LF   G  G  L    F   I+++    G+ P   
Sbjct: 193 VAEWLVARDAAEAAAQARGKAASRFLFPSHGKDGH-LTRHRFFTLIKEIAVLGGVSPEKV 251

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T HTLRH+FATHLL  G DLRSIQ++LGH  + TT+IYT+V
Sbjct: 252 TPHTLRHAFATHLLEGGADLRSIQTLLGHADVGTTEIYTHV 292


>gi|78777937|ref|YP_394252.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
 gi|78498477|gb|ABB45017.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
          Length = 270

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 148/304 (48%), Gaps = 48/304 (15%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ LE  RG S LT++SY+             TE   +I+ ++  ++  +     + + 
Sbjct: 3   FLKYLEDIRGYSDLTIKSYDESI----------TEALKSIEFVQDKNHILLNLMPYRIKI 52

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  +++ + LS I+SF  YL   +I+    +    ++K + +LP+ ++    + +++ 
Sbjct: 53  STLNPKTISKKLSAIRSFADYLNDNEISVM--LKGDDSIKVAKTLPKPISH---VNIIEA 107

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           + L +      +D R   ++ L Y  GLRISE  SL  +N+ D+   +R+ GKG K R V
Sbjct: 108 INLAS------LDER--VVVTLFYTLGLRISELASLELKNVSDEW--VRVIGKGSKQRDV 157

Query: 201 PLLPSVRKAILEYYDLCP-----FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           PLL   +K + EY    P     F+ N            G+ L+    +  I ++ R +G
Sbjct: 158 PLLEQSKKVLDEYLSKSPHKKFVFEKN------------GEKLSENSLRYIITKVFRRVG 205

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L +S   H LRHSFA+ LL+    +  +  +LGH  ++TTQIYT    K G     + Y+
Sbjct: 206 LKVS--PHQLRHSFASQLLNGNAPIADVSELLGHSSMATTQIYT----KLGSALKQQNYN 259

Query: 316 QTHP 319
             HP
Sbjct: 260 MAHP 263


>gi|325853546|ref|ZP_08171378.1| phage integrase, N-terminal SAM domain protein [Prevotella
           denticola CRIS 18C-A]
 gi|325484350|gb|EGC87278.1| phage integrase, N-terminal SAM domain protein [Prevotella
           denticola CRIS 18C-A]
          Length = 294

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 141/300 (47%), Gaps = 15/300 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +ER  S +T+ SY  D   F  F     + +IT +++       +R ++     
Sbjct: 7   FLDYLRLERNYSPMTVISYRKDLEAFERFCQ-ELDPQITWESV---DTDVVRDWMEDMMD 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     S+ R +S ++SF ++  +  + ++  +  ++  ++   LP+ L E +   L+D 
Sbjct: 63  KGNAASSVNRRISALRSFYRFALRCGLVSKDPVHGLQGPRRQKPLPQFLKESEMEQLLDP 122

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +    +E    D     ++   Y  G+R+SE   L  +++ D    L++ GK +K RI+
Sbjct: 123 AMWTDGYE----DVLARTLIVTFYETGIRLSELTGLDDRDVDDVTCELKVTGKRNKQRII 178

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P    + + +  Y   C  D       P LFR  +G+ +     +  +++    +     
Sbjct: 179 PFGKELEETLAAYR--CVRDARTGDSSPTLFRTEKGERITNAQVRALVKKNLSKVSTLKK 236

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T H LRH+FAT +L++   L S++ +LGH  LSTT+IYT+   +     + ++Y   HP
Sbjct: 237 RTPHVLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQ----LKKVYKNAHP 292


>gi|126651787|ref|ZP_01723989.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905]
 gi|126591465|gb|EAZ85572.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905]
          Length = 355

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 141/302 (46%), Gaps = 25/302 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIF------------LAFYTEEKITIQTIRQL 66
           +++L  L   +G S+ T + YE D   F  F            LA      ITI+ IR +
Sbjct: 46  KDFLVYLTTIKGKSQRTRKEYEYDLTLFFRFHTAVQEDLDIENLAVIDIATITIEEIRDI 105

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRS--LSGIKSFLKYLK-KRKITTESNILNMRNLKKSN 123
           +  ++  F+     Q+ G+ +  R+  ++ +KSF KYLK KR++  E+    +   K   
Sbjct: 106 TLEDLYYFMEYCEVQR-GNSAASRARKVATLKSFFKYLKGKRRLIEENPAEELETPKIGR 164

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
             P  +N ++A   +D +  + +        RN  ++      G+R++E   L   +I  
Sbjct: 165 KRPIYMNFQEATQFIDGIPANQA------SPRNYCMMMFFLNLGIRVTELCQLNITSIQG 218

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
               L + GKG+K R V L  S  +A+ +Y +        N   PLF   +G        
Sbjct: 219 RH--LTVVGKGNKERTVYLNDSCMQALADYENSGKTPYKGNGDEPLFVSQKGTRFTRQTV 276

Query: 244 QRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            + ++++ +  GL     T H LRH+ AT +   G D+RS+Q ILGH  ++TTQIYT++ 
Sbjct: 277 AKIVKRINQQSGLQKERLTPHKLRHTSATMMYKAGADIRSLQHILGHSSVATTQIYTHIE 336

Query: 303 SK 304
            +
Sbjct: 337 DE 338


>gi|259500641|ref|ZP_05743543.1| integrase/recombinase XerC [Lactobacillus iners DSM 13335]
 gi|302191330|ref|ZP_07267584.1| integrase/recombinase CodV [Lactobacillus iners AB-1]
 gi|259168025|gb|EEW52520.1| integrase/recombinase XerC [Lactobacillus iners DSM 13335]
          Length = 307

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 148/311 (47%), Gaps = 22/311 (7%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           + LK   N+L+N   ER  S  T ++Y  D  +      F+ E    I  ++ LS  +I 
Sbjct: 6   DFLKLYYNYLKN---ERNYSINTCKAYMDDLSEAR---TFFVENGGFIDWLK-LSSRDIE 58

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALN 130
            FI     +K    +  R +S ++SF ++L KR I       ++++R   K   LP  L 
Sbjct: 59  IFIQYLAQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGEHKK--LPEFLY 116

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             + + ++ ++       T  +  RN A+L L Y  G+R+SE  +L    I  + + + +
Sbjct: 117 SDEMVKVLKSI-----STTTPLGLRNMALLELFYATGMRVSEISNLKLDQIDFELNLILV 171

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIR 248
            GKG+K R V      + A+  Y       L L+      +F    G  +     +  I+
Sbjct: 172 HGKGNKDRYVAFGEEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNRITSRGLEYIIK 231

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            +    G+  S   H LRH+FAT +L+NG DLR++Q +LGH  +STTQIYT+V  ++   
Sbjct: 232 NIFLNAGVSASVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQH--- 288

Query: 309 WMMEIYDQTHP 319
            + +IY +  P
Sbjct: 289 -LCDIYHKYFP 298


>gi|209883237|ref|YP_002287094.1| tyrosine recombinase XerD [Oligotropha carboxidovorans OM5]
 gi|209871433|gb|ACI91229.1| tyrosine recombinase XerD [Oligotropha carboxidovorans OM5]
          Length = 316

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 131/299 (43%), Gaps = 31/299 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE--KITIQTIRQ-LSYTEIRAFISK 77
           +L  L  E+G    TL +Y  D      FLA    +  +   Q +R  L+  + R F S 
Sbjct: 13  FLDMLAAEQGAGDNTLNAYRSDLEDLSAFLAHAKTDFARADTQALRDYLADLDRRGFKSS 72

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    S+ R LS  +   ++L   +  ++     +   K+   LP+ L+      L
Sbjct: 73  ---------SVARRLSSTRHLFRFLLNERKRSDDPAAILAGPKRGRPLPKVLSIADVDRL 123

Query: 138 VDNVLLHTSHET----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           +         E     K    R   +L +LY  GLR+SE ++L       D   + ++GK
Sbjct: 124 LGKAREFADQEQAPLQKLRAMRLWCLLEVLYATGLRVSELVALPLSAAKRDARMIVVRGK 183

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV----------F 243
           GDK R+VPL  S R+A+  Y            +       R K L P            F
Sbjct: 184 GDKERLVPLNQSSREAMTAYLAATEAAKTDKTK----SEPRSKWLFPSSGESGHLTRQHF 239

Query: 244 QRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            R +++L     + P   + H LRH+FA+HLL NG DLR +Q++LGH  +STTQIYT+V
Sbjct: 240 ARDLKELAMAAAISPRLISPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHV 298


>gi|154249762|ref|YP_001410587.1| integrase family protein [Fervidobacterium nodosum Rt17-B1]
 gi|154153698|gb|ABS60930.1| integrase family protein [Fervidobacterium nodosum Rt17-B1]
          Length = 290

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 155/308 (50%), Gaps = 29/308 (9%)

Query: 8   EIVSFE-LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI---TIQTI 63
           +I+  E LL+  +++L ++   R  S+ T+++Y  D R+F  ++    ++ +     + +
Sbjct: 2   DIIDIEALLRTYEDYLVHV---RRSSENTVKAYIKDIRRFFEYIQKPPKDIVRSDVEKFV 58

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           + LS  EI          ++ + ++ R +S +K+   YL+   +  E+    +R+ +   
Sbjct: 59  KALSKGEITG-------GEVTETTISRYISSLKTIFDYLQLIGVVNENPTERVRHPRLRK 111

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            +P  L  K+        +++T  E K  + +   I+ +LY CGLR+SE  +L  +++  
Sbjct: 112 KIPSFLTMKEV-----KAMINTFDEEK--ELKYKTIISVLYFCGLRVSELCNLRVEDVSF 164

Query: 184 DQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
               +++  GKG+K R+VP+  S+   + +Y +     +        F   RGK ++P  
Sbjct: 165 YPPYIKVVMGKGNKDRLVPISDSIIPLLEKYVERYKPKV-------YFIESRGKSIHPAT 217

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             R +++  +  G+      HTLRHSFATHL+ N  +++ +Q +LGH  LSTT IY +V 
Sbjct: 218 VFRIVKRAAQRAGINKKIHPHTLRHSFATHLIMNNVNVKIVQELLGHANLSTTSIYLHVA 277

Query: 303 SKNGGDWM 310
            K   D +
Sbjct: 278 DKEKFDAV 285


>gi|237717383|ref|ZP_04547864.1| integrase [Bacteroides sp. D1]
 gi|229443366|gb|EEO49157.1| integrase [Bacteroides sp. D1]
          Length = 292

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 146/301 (48%), Gaps = 13/301 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  L+ ER  S+ T+ +Y  D +Q    L  + +E+       ++    IR +I   
Sbjct: 3   ESFLDYLQYERNYSEKTVLAYGEDIKQ----LQEFAQEEYGKFNPLEVEAELIREWIVSL 58

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S+ R LS +++F KYL ++  TT   +  ++  K    LP  L E +   L+
Sbjct: 59  MDKGYTSTSVNRKLSSLRTFYKYLLRQGETTIDPLRKIKGPKNKKPLPVFLKENEMNRLL 118

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D     T     +   R+  I+ + Y  G+R+SE + L  +++    S L++ GK +K R
Sbjct: 119 D----ETDFGEGFKGCRDRLIIEMFYATGMRLSELIGLDNKDVDFSASLLKVTGKRNKQR 174

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++P    +++ +LEY ++    +    +    R    +     V+    R L +   L  
Sbjct: 175 LIPFGDELQELMLEYINVRNETIPERSEAFFIRENGERLYKNLVYNLVKRNLSKVATLK- 233

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FAT +L+N  +L +++ +LGH  ++TT+IYT+   +     + ++Y Q H
Sbjct: 234 KKSPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIYTHATFEE----LKKVYKQAH 289

Query: 319 P 319
           P
Sbjct: 290 P 290


>gi|190410733|ref|YP_001966071.1| putative integrase [Thermus sp. 4C]
 gi|148608607|gb|ABQ95627.1| putative integrase [Thermus sp. 4C]
          Length = 386

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 138/299 (46%), Gaps = 37/299 (12%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           LE+E G S  T + Y  D     +F  ++ E         ++    IRAF++ R   ++ 
Sbjct: 92  LEMEEGRSPRTAKEYLMDAG---LFARWFRERHGRPPRFEEVGSQHIRAFLASR---EVS 145

Query: 85  DRSLKRSLSGIKSFLKYLKKR------KITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                R L+ ++   +YL +       K  TE     ++  K    LP  L   +   L+
Sbjct: 146 PHRAGRVLASLRKLFRYLAEVEGLPLLKDPTE----GVKRPKLPRRLPVYLTPPEVARLL 201

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGD 195
                + S     +  R+ A+L  LYG GLR+SEAL+LT  ++         +R+QGKG 
Sbjct: 202 QAAYQNRSPR---VALRDWALLAFLYGTGLRLSEALALTYADLTYQDGIPHAIRVQGKGG 258

Query: 196 KIRIVPLLPSVRKAI--------LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           K R+V L P+ ++A+        LE +   P+  +           RGKP +    +  +
Sbjct: 259 KERVVVLSPTAQRALHQWLKHRNLEGHPTSPYIWSHTTG-----PNRGKPFSARAVEAMV 313

Query: 248 RQLRRYLGLP--LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +++ R  GL      T H LRHS+A+ L+  G  +  ++ +LGH  +STTQ+Y +V+ K
Sbjct: 314 KRVARRAGLKDWRRITPHKLRHSYASALVEAGRGIDEVKELLGHSSISTTQVYVHVSRK 372


>gi|325473780|gb|EGC76968.1| tyrosine recombinase xerC [Treponema denticola F0402]
          Length = 305

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 147/307 (47%), Gaps = 35/307 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R  +K T+ SY+ D    +IF  +  E  + +    +L  ++IR FI++   +KI   S+
Sbjct: 16  RQFTKATIDSYKND---LIIFEEWLKELDLNV---FELKASDIRIFIAELADKKIAPASI 69

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R +S ++ F KY  +  +T  + I ++RNLK +  LP  +  KQA        L ++  
Sbjct: 70  NRMMSTLRGFYKYALRFNLTKINPISSVRNLKLAQKLPVFMFPKQAQEFCR---LPSNAG 126

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
             W + R++A+   LY  G R+SE   L  +++    S   + GKG K R V       K
Sbjct: 127 ILW-ETRDAALFASLYSTGCRVSELAGLDIKDLDKTLSYAIVFGKGKKERKV-FFAEFAK 184

Query: 209 AILEYY-----DLCPF-------DLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLG 255
             L+ Y     DL          D    I+  LF   + + L   G+  RYI  + RY+ 
Sbjct: 185 EYLKIYLQERTDLVEKFKGQVQKDGKGKIRDALFINQKAQALTSRGI--RYI--INRYVE 240

Query: 256 LPLST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           L       + H  RHSFA+ L++ G D+R +Q +LGH  +STTQ YT++ ++     +  
Sbjct: 241 LSPELKHLSPHAFRHSFASTLITRGADIRVVQELLGHESVSTTQRYTHITAEQ----LQN 296

Query: 313 IYDQTHP 319
           +Y   HP
Sbjct: 297 LYKTAHP 303


>gi|291615497|ref|YP_003522605.1| integrase family protein [Nitrosococcus halophilus Nc4]
 gi|291582559|gb|ADE17015.1| integrase family protein [Nitrosococcus halophilus Nc4]
          Length = 310

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 140/308 (45%), Gaps = 25/308 (8%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           + +  + R+++L +L   +G S+ T   Y  D    L     + EE    +  RQ ++ +
Sbjct: 5   AVDFWQARKDFLAHLHYTKGYSQGTCYGYNSD----LGIWGRWLEE--ADKDWRQATHVD 58

Query: 71  IRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
              F++ + R +      + R  S + SF K+  K  +     I      K+   +P  L
Sbjct: 59  TEQFVAWQMRERGTKAHIVARRSSCLGSFYKWAMKNALVESDPIYLADKPKRPYRIPIWL 118

Query: 130 NEKQALT----------LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
            +++ L           L +N+        K I  R   +  L+   GLRISEAL++  +
Sbjct: 119 EKEEQLAFQEAVRRVDDLPENIFGRPREHIKAIRRRYDFLFGLILNSGLRISEALAVKIR 178

Query: 180 NIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
           ++        ++R+ GKG++ R+VPL  +  +    +      D  +  + P       K
Sbjct: 179 DVRIVNGVAKSVRVIGKGNRERLVPLPEAFGQVFGAWLQGRGGDDFVFAKAP-----GEK 233

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           P  P   + Y+R+L    G+    T H LRH++AT LL  G +L  IQ +LGH  LSTTQ
Sbjct: 234 PPGPHAVRTYLRRLIERAGIDKPVTPHKLRHTYATRLLEAGAELVDIQVLLGHVDLSTTQ 293

Query: 297 IYTNVNSK 304
           IYT+V+ +
Sbjct: 294 IYTHVSEE 301


>gi|90422292|ref|YP_530662.1| phage integrase [Rhodopseudomonas palustris BisB18]
 gi|90104306|gb|ABD86343.1| phage integrase [Rhodopseudomonas palustris BisB18]
          Length = 304

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 143/297 (48%), Gaps = 14/297 (4%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-KITIQTIRQLSYTE 70
            EL +   ++L    +ER LS  TLQ+Y  D   F  +L    E   +T + +R   Y E
Sbjct: 1   MELRRLTASFLDTCAVERQLSANTLQAYGYDLADFCAWLKGQGEAPAVTTEHLRD--YLE 58

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
                S    +K+   +++R ++ +++F ++L  R    +        L +   LPRAL+
Sbjct: 59  -----SMMVARKLSPSTVRRRIACLRAFFRFLDDRGEMPDPFTGWRLKLPRRKRLPRALS 113

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAI-LYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            ++A  L+ +     +       +    + + L+   G+R+ E   +   ++  D ++LR
Sbjct: 114 REEANQLLTSARAPGAARQSLPASTPLCVEIRLMISTGIRVGELCKIATGDVSSDGASLR 173

Query: 190 IQGKGDKIRIVPLL-PSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYI 247
           I GKG + R+V +  P++R    E   L      L+    PLF    G+ L P  F+  +
Sbjct: 174 IHGKGSRDRVVYVSNPALRN---ELRKLTTLRQRLSAGDGPLFVNRNGENLRPYSFRTKL 230

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R      GL    T H LRH+ AT L+ +G D+R +Q +LGH  ++TT+IYT+V+ +
Sbjct: 231 RNFAGQAGLRRRVTPHMLRHTAATLLIESGVDIRIVQRLLGHSSIATTEIYTHVSDE 287


>gi|119475308|ref|ZP_01615661.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143]
 gi|119451511|gb|EAW32744.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143]
          Length = 312

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 144/308 (46%), Gaps = 30/308 (9%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           E+ R LS  TL +Y  D  +F    A Y   +  +        +++R +I+      +  
Sbjct: 25  EVARQLSPHTLSNYRRDLEKF----ADYCRHRAIVDH-HHAHNSDVRQWIALLHRNGLSG 79

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN--EKQALTLVDNVLL 143
            SL RSLS ++SF KY  K+     +  + ++  +    LP+ L+    Q    +D    
Sbjct: 80  TSLSRSLSSLRSFYKYSNKQG-GDHNPAIGIKAPRGEKRLPKTLDIDSMQQFLSIDG--- 135

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
                  W+  R+ AIL L Y  GLR+SE + +  ++       + + GKG K R +P+ 
Sbjct: 136 -----DDWLTVRDRAILELFYSSGLRLSELVDMDTEDFDLQNGLIIVTGKGRKTRTLPVG 190

Query: 204 PSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
                A+  ++    D  P      I    F   +G  L     Q+ +++     GL   
Sbjct: 191 SHAIAALKNWFSVRSDAHP------INNAAFVSAKGTRLGQRGIQQRLKKYSLQQGLGQK 244

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRHSFA+H+L + GDLR++Q +LGH  ++TTQ+YT+++ ++    + ++YD  HP
Sbjct: 245 IHPHMLRHSFASHMLESSGDLRAVQELLGHANITTTQVYTHLDFQH----LAKVYDTAHP 300

Query: 320 SITQKDKK 327
              +K  K
Sbjct: 301 RAVRKKPK 308


>gi|293607049|ref|ZP_06689392.1| integrase/recombinase [Achromobacter piechaudii ATCC 43553]
 gi|292814539|gb|EFF73677.1| integrase/recombinase [Achromobacter piechaudii ATCC 43553]
          Length = 332

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 118/248 (47%), Gaps = 19/248 (7%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           +K  I+      + E RA  + RR            L+ ++ F  +  +   +     L 
Sbjct: 86  QKADIEAWFAFRHEETRATTANRR------------LAALRRFFAWALREHRSQRDPCLT 133

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +   K+   LP+ L+E+Q      + LL     T+    R+ A+L  LY  GLR+SE + 
Sbjct: 134 LVAAKQPPRLPKTLSEQQV-----DALLRAPDATQPRGLRDRAMLETLYATGLRVSELVG 188

Query: 176 LTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGI 233
           +   ++  ++  +R+  GKG K R+VPL       I  Y      +L    Q   LF   
Sbjct: 189 VRALDVSLNEGVVRVVLGKGGKDRLVPLGAEAAHWIDLYSKTARPELAAGRQSDALFITG 248

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R + ++   F + +++      +    + H LRH+FATHLL++G DLR +Q +LGH  +S
Sbjct: 249 RAEAMSRQAFWQLVKKYALLADIHAPLSPHVLRHAFATHLLNHGADLRVVQMLLGHADIS 308

Query: 294 TTQIYTNV 301
           TTQIYT+V
Sbjct: 309 TTQIYTHV 316


>gi|325912006|ref|ZP_08174408.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 143-D]
 gi|325476191|gb|EGC79355.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 143-D]
          Length = 307

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 148/311 (47%), Gaps = 22/311 (7%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           + LK   N+L+N   ER  S  T ++Y  D  +      F+ E    I  ++ LS  +I 
Sbjct: 6   DFLKLYYNYLKN---ERNYSINTCKAYMDDLSEAR---TFFVENGGFIDWLK-LSSRDIE 58

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALN 130
            FI     +K    +  R +S ++SF ++L KR I       ++++R   K   LP  L 
Sbjct: 59  IFIQYLAQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGDHKK--LPEFLY 116

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             + + ++ ++       T  +  RN A+L L Y  G+R+SE  +L    I  + + + +
Sbjct: 117 SDEMVKVLKSI-----STTTPLGLRNMALLELFYATGMRVSEISNLKLDQIDFELNLILV 171

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIR 248
            GKG+K R V      + A+  Y       L L+      +F    G  +     +  I+
Sbjct: 172 HGKGNKDRYVAFGEEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNRITSRGLEYIIK 231

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            +    G+  S   H LRH+FAT +L+NG DLR++Q +LGH  +STTQIYT+V  ++   
Sbjct: 232 NIFLNAGISASVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQH--- 288

Query: 309 WMMEIYDQTHP 319
            + +IY +  P
Sbjct: 289 -LCDIYHKYFP 298


>gi|312876773|ref|ZP_07736752.1| tyrosine recombinase XerD [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796504|gb|EFR12854.1| tyrosine recombinase XerD [Caldicellulosiruptor lactoaceticus 6A]
          Length = 291

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 141/297 (47%), Gaps = 18/297 (6%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           +L+ +   S+ T+ SY  D ++++ FL     + I I+       T I   IS +++ K 
Sbjct: 10  HLQRQNRFSQNTISSYLRDAKKYIEFL-----DNIKIKLENTSQATLIAYIISMQKSGK- 63

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
            + ++ R++  +K F  +LK + I     I  +   K   S P+ L   +        LL
Sbjct: 64  SNSTIVRAIVSLKVFYDFLKTQNIVDIGKI-EIEPPKLEKSPPQILTRDEV-----EKLL 117

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
               E      R+ A+L LLY  G+R+SE ++L   +I  +   +  + K  + R++P+ 
Sbjct: 118 SCPKEDDIKGIRDKAMLELLYATGIRVSELINLNLDDINLEHGYIICKNK-KRDRVIPIG 176

Query: 204 PSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
                A+  Y     P+      +  LF    G+ +    F + ++   +  G+    T 
Sbjct: 177 SYAISAVERYLRHSRPYLAKNKDEEALFLNFNGERMTRQGFWKIVKFYAQSAGIDKEITP 236

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           H LRHSFATHL+ NG D+R++Q +LGH  +STTQ Y  V +      + E+Y +THP
Sbjct: 237 HVLRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVK----LKEVYQKTHP 289


>gi|329117924|ref|ZP_08246638.1| site-specific recombinase XerC [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327466005|gb|EGF12276.1| site-specific recombinase XerC [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 314

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 147/299 (49%), Gaps = 19/299 (6%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR-- 86
           R  S+ T++ Y  + RQF+  L  Y  +        Q + TEI   + +  T K  D   
Sbjct: 24  RCFSEGTIEGYRSNLRQFVSRLGDYAAKHKVADF--QTACTEI--VMMETITMKQADNPE 79

Query: 87  ----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK-SNSLPRALNEKQALTLVDNV 141
               +++R +   +SF+ YL K  +   S      +L K   +LP++++      L+DN 
Sbjct: 80  LKATTIRRYICAWRSFIAYLVKANVLDLSYDRFRFDLPKLPETLPKSVDMSVLDKLLDNP 139

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
                 +  W+  RN  I  L+   GLRISE  +L   ++   +  +R+ GKG + R+VP
Sbjct: 140 QC-LPKQPHWMYLRNLCIFELMTYSGLRISEVSNLLMTDVYFAERQIRVIGKGQRTRLVP 198

Query: 202 LLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLS 259
           +  +V K I  Y  +     +N+     LF G  GK L P   +  + ++    LG  + 
Sbjct: 199 ITDTVAKRIRAYLKERSASAVNIRTN-HLFVGRGGKMLRPCSIRLSLHKMVAARLGEEMH 257

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
            T H+LRHS ATH +    +LR +Q +LGH  ++TTQIYT+++  NG  ++ E++ Q H
Sbjct: 258 ITPHSLRHSCATHFVRETHNLRFVQILLGHKSIATTQIYTHLD--NG--FVQEMFHQHH 312


>gi|255692650|ref|ZP_05416325.1| tyrosine recombinase XerC [Bacteroides finegoldii DSM 17565]
 gi|260621626|gb|EEX44497.1| tyrosine recombinase XerC [Bacteroides finegoldii DSM 17565]
          Length = 293

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 142/306 (46%), Gaps = 23/306 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  L  ER  S  T+ +Y  D RQ   F      E   ++   +L    IR +I   
Sbjct: 4   ESFLDYLRYERNYSDKTVLAYGEDIRQLQEFAQEEYGEFDPLEVEAEL----IREWIVSL 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S+ R LS +++F K+L K+   T   +  +   K   +LP  L E +   L+
Sbjct: 60  MDKGYTSTSVNRKLSTLRTFYKFLLKKGEVTVDPLRKIVGPKNKKTLPVFLKENEMNKLL 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D     T     +   R+  I+ + Y  G+R+SE + L  +++    S L++ GK +K R
Sbjct: 120 D----ETDFGEGFKGCRDRLIIEMFYATGMRLSELIDLDDKDVDFSGSCLKVTGKRNKQR 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRY 253
           ++P    +R  +L Y D+       N  +P      F    G+ L   +    +++    
Sbjct: 176 LIPFGDELRDWMLGYIDV------RNEMIPERSEAFFVRENGERLYKNLVYNLVKRNLSK 229

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +      + H LRH+FAT +L+N  +L +++ +LGH  ++TT+IYT+   +     + ++
Sbjct: 230 VATLKKKSPHVLRHTFATTMLNNNAELGAVKELLGHESITTTEIYTHATFEE----LKKV 285

Query: 314 YDQTHP 319
           Y Q HP
Sbjct: 286 YKQAHP 291


>gi|319936094|ref|ZP_08010516.1| hypothetical protein HMPREF9488_01347 [Coprobacillus sp. 29_1]
 gi|319808881|gb|EFW05399.1| hypothetical protein HMPREF9488_01347 [Coprobacillus sp. 29_1]
          Length = 301

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 145/298 (48%), Gaps = 17/298 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  +N+L   + ++ L+  TL++Y  D  QF  ++ F   +          +  +I  +I
Sbjct: 4   KHVENYLNYCQYQKRLTGKTLKAYRIDLNQFYTYMQFKNLK----------NKKDISVYI 53

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-RNLKKSNSLPRALNEKQA 134
            +  T     R++KR ++ IK+F  YL+K+    E+    +    K+   LP+ +   + 
Sbjct: 54  QQLHT-TYKPRTVKRKIAAIKAFYTYLEKQDFLKENPFHKIDYRFKEPIRLPKTITLHEL 112

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L  ++  ++   +  +  R+ AIL LL   G+R+SE   L   N+   ++T+ I GKG
Sbjct: 113 NHLYQSLYAYSKQTSNRVITRDIAILELLICTGIRVSEVSHLLKSNVFIRENTIIINGKG 172

Query: 195 DKIRIVPLL-PSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRR 252
            K RI+ +   ++ +++L Y  L   ++    + P F   R G  L+    +  I +   
Sbjct: 173 SKERIIYIDNQNLIQSLLSYQRLFQDEIE---KSPYFFINRLGHHLSEQSIRFMIVKYCH 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              +    T H  RH+FAT +L    D+R IQ ILGH  ++TTQIYT++++    + M
Sbjct: 230 LFHIDSHITPHMFRHTFATMMLEEDVDIRYIQEILGHSSITTTQIYTHMSAHKQKEIM 287


>gi|282890174|ref|ZP_06298704.1| hypothetical protein pah_c014o025 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499831|gb|EFB42120.1| hypothetical protein pah_c014o025 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 329

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/256 (31%), Positives = 129/256 (50%), Gaps = 17/256 (6%)

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           IR F++     ++  R++ R LS +++F KY   +K  + +    + + +    +P +L+
Sbjct: 82  IRGFLAHLSDNQVHKRTVVRRLSSLRTFFKYTLAQKWISANPTEELESPRVEKKVPNSLS 141

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             Q  TL D     T     ++  R+  I+ L Y  GLR+SE ++L  Q        +++
Sbjct: 142 YDQVQTLFDQPDTKT-----FLGFRDRVIMELFYSSGLRVSELVALDRQEFDPKNLLIKL 196

Query: 191 QGKGDKIRIVPLLPSVRK---AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           +GKG K RIVP+  +      A L + + C  +++ +        I    L   +  R +
Sbjct: 197 KGKGKKERIVPITKNAADWINAYLTHPERC-VEIDGHFAQQDSNAIFLNRLGTRLTTRSV 255

Query: 248 -RQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            R+  +YL   GL    T HT+RH+ ATH L NG DL++IQ ILGH  L+TT IYT V+ 
Sbjct: 256 DRKFDKYLTASGLIGKVTPHTIRHTIATHWLENGMDLKTIQMILGHISLATTTIYTQVSK 315

Query: 304 KNGGDWMMEIYDQTHP 319
                   ++YDQTHP
Sbjct: 316 ----GLKKKVYDQTHP 327


>gi|262406148|ref|ZP_06082698.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_22]
 gi|294644043|ref|ZP_06721820.1| tyrosine recombinase XerC [Bacteroides ovatus SD CC 2a]
 gi|294810195|ref|ZP_06768862.1| tyrosine recombinase XerC [Bacteroides xylanisolvens SD CC 1b]
 gi|298483048|ref|ZP_07001229.1| tyrosine recombinase XerC [Bacteroides sp. D22]
 gi|262357023|gb|EEZ06113.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_22]
 gi|292640567|gb|EFF58808.1| tyrosine recombinase XerC [Bacteroides ovatus SD CC 2a]
 gi|294442607|gb|EFG11407.1| tyrosine recombinase XerC [Bacteroides xylanisolvens SD CC 1b]
 gi|298270792|gb|EFI12372.1| tyrosine recombinase XerC [Bacteroides sp. D22]
          Length = 293

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 146/301 (48%), Gaps = 13/301 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  L+ ER  S+ T+ +Y  D +Q    L  + +E+       ++    IR +I   
Sbjct: 4   ESFLDYLQYERNYSEKTVLAYGEDIKQ----LQEFAQEEYGKFNPLEVEAELIREWIVSL 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S+ R LS +++F KYL ++  TT   +  ++  K    LP  L E +   L+
Sbjct: 60  MDKGYTSTSVNRKLSSLRTFYKYLLRQGETTIDPLRKIKGPKNKKPLPVFLKENEMNRLL 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D     T     +   R+  I+ + Y  G+R+SE + L  +++    S L++ GK +K R
Sbjct: 120 D----ETDFGEGFKGCRDRLIIEMFYATGMRLSELIGLDNKDVDFSASLLKVTGKRNKQR 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++P    +++ +LEY ++    +    +    R    +     V+    R L +   L  
Sbjct: 176 LIPFGDELQELMLEYINVRNETIPERSEAFFIRENGERLYKNLVYNLVKRNLSKVATLK- 234

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FAT +L+N  +L +++ +LGH  ++TT+IYT+   +     + ++Y Q H
Sbjct: 235 KKSPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIYTHATFEE----LKKVYKQAH 290

Query: 319 P 319
           P
Sbjct: 291 P 291


>gi|149370706|ref|ZP_01890395.1| tyrosine type site-specific recombinase [unidentified eubacterium
           SCB49]
 gi|149356257|gb|EDM44814.1| tyrosine type site-specific recombinase [unidentified eubacterium
           SCB49]
          Length = 284

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 139/288 (48%), Gaps = 33/288 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + W++    E+ LS  T+ +Y      FL ++  +   ++  + +R+ +Y     +I K 
Sbjct: 18  KKWME----EQRLSHNTIMTYSNAVSLFLNYIVKHGTTEMNEEWVRRFNYD----YIIKN 69

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R          + +SG+K +L++ +   +T E    N     K  +LP  L++++   L+
Sbjct: 70  R---FSISYQNQCISGVKKYLEF-RGLAVTLE----NYERPDKGKTLPAVLSKQEVKRLL 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKI 197
           D +           + ++  +L L+Y  GLRI EALSL P  I   +  + I+G KG K 
Sbjct: 122 DGIK----------NLKHKTLLSLVYSSGLRIGEALSLRPTAIDSTRKLIFIEGAKGKKD 171

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R V L   + + + +YY +         +  LF G  G   +    +   +   +  G+ 
Sbjct: 172 RYVLLSSKLLEDLRKYYTV------YRPKTYLFEGRSGTMYSASSARAVFKSAAKRAGIT 225

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
                HTLRHSFATHLL NG DLR IQ +LGH    TT IYT+V++++
Sbjct: 226 KEVRLHTLRHSFATHLLENGTDLRYIQQLLGHQSPKTTMIYTHVSTRS 273


>gi|242399198|ref|YP_002994622.1| Probable tyrosine recombinase xerC-like protein [Thermococcus
           sibiricus MM 739]
 gi|242265591|gb|ACS90273.1| Probable tyrosine recombinase xerC-like protein [Thermococcus
           sibiricus MM 739]
          Length = 278

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 131/264 (49%), Gaps = 22/264 (8%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
           E  + Q +    +Y E    ++ +   +Y     F++K + +   ++SL   +  +KS+ 
Sbjct: 15  EGKSPQTVRMYTYYVER--FLKDVENPNYRSALRFLAKLKKEGYSNKSLNLVVQALKSYF 72

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           ++        + +   +++ K   SLP++L  +    L++ V             R+  I
Sbjct: 73  RFE-----GLDEDAEKLKSPKVPRSLPKSLTREDVKRLLNAV--------PPTRKRDRLI 119

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCP 218
           + LLYG GLR+SE  +L  ++I  ++  L ++G KG K RIVPL  S+ K I +Y     
Sbjct: 120 ILLLYGTGLRVSEVCNLKIKDIDFNRGVLTVEGGKGAKDRIVPLSGSLLKEIEKY----- 174

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG 277
            +   +    LF  IR +  +    +     L++Y     +S T H LRHSFATH+L  G
Sbjct: 175 LETRKDGSEYLFVEIRREKKDKISPKTVWYLLKKYGNKANVSVTPHMLRHSFATHMLERG 234

Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301
            D+R IQ ILGH  LSTTQIYT V
Sbjct: 235 VDIRVIQEILGHSSLSTTQIYTKV 258


>gi|159044160|ref|YP_001532954.1| tyrosine recombinase [Dinoroseobacter shibae DFL 12]
 gi|157911920|gb|ABV93353.1| tyrosine recombinase [Dinoroseobacter shibae DFL 12]
          Length = 308

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 120/248 (48%), Gaps = 16/248 (6%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           Q+   +I  ++       +   +  R LS I+   ++  +    T++  L ++   ++  
Sbjct: 47  QVQRADIETYLIACSDAGLSQATRARRLSAIRQLYRFAYEEGWRTDNPSLQIKGPGRAKR 106

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWID--ARNSAILYLLYGCGLRISEALSLTPQNIM 182
           LP+ L+E      VD +L    +  +      RN+ +L LLY  GLR++E   L    + 
Sbjct: 107 LPKTLSEAD----VDRLLAAARNTGRSPSDRQRNACMLELLYATGLRVTELCGLPVAAVR 162

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVR---KAILEYYDLCPFDLNLNIQLP---LF--RGIR 234
            D   + ++GKG K R+VPL    R   +A L+  D            P   LF  RG  
Sbjct: 163 GDPHLILVRGKGGKERMVPLSTPARTELQAWLKVRDAAEQTAISKGAAPSKYLFPSRGKL 222

Query: 235 GKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           G  L    F   I+ +    G+ P   T HTLRH+FATHLL+ G DL SIQ++LGH  ++
Sbjct: 223 GH-LTRHRFYALIKDIAVAAGVDPSGVTPHTLRHAFATHLLARGADLMSIQALLGHADVA 281

Query: 294 TTQIYTNV 301
           TT+IYT+V
Sbjct: 282 TTEIYTHV 289


>gi|15639386|ref|NP_218835.1| integrase/recombinase (xprB) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025628|ref|YP_001933400.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14]
 gi|3322673|gb|AAC65379.1| integrase/recombinase (xprB) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018203|gb|ACD70821.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14]
 gi|291059785|gb|ADD72520.1| tyrosine recombinase XerC [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 297

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 146/307 (47%), Gaps = 26/307 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+ L   R LS  T+ +Y  D   F  +L      +   +   +++ +++R F+ +  
Sbjct: 8   QYLEYLFRVRRLSAHTVSAYARDLNLFERWL------QHAQRACARVTVSDMRLFVCELG 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +   S+ R LS ++ F  + KK+    ++    +RN+K  + LPR +   QA     
Sbjct: 62  RRGLSAASINRVLSVVRGFYVFAKKKHWCADNPARLVRNIKGPSKLPRFMFPPQAKAFYT 121

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              L +  +  W + R++A+  +LY  G R+SE  +L+ +++    S+  ++GKGD+ R 
Sbjct: 122 ---LPSRTDILWQE-RDAALFAMLYSTGCRVSEIAALSLKDVHPHLSSAIVRGKGDRERT 177

Query: 200 VPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           V + P  +  +  Y       C      +    LF   RG+ L+    Q  +    RY+ 
Sbjct: 178 VFIAPFAQNFLHVYMQARAQRCA--RYASCTPALFVNQRGRSLSVRGIQYLVS---RYVL 232

Query: 256 LPLSTTA---HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           L     A   H  RHSFA+ L+  G D+R  Q +LGH  +STTQ Y +V S+     + +
Sbjct: 233 LAQDVHALSPHAFRHSFASTLIRRGADVRVAQELLGHASVSTTQRYVHVTSEQ----LQD 288

Query: 313 IYDQTHP 319
           +Y + HP
Sbjct: 289 LYHRAHP 295


>gi|325127862|gb|EGC50768.1| tyrosine recombinase XerD [Neisseria meningitidis N1568]
          Length = 291

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 117/233 (50%), Gaps = 11/233 (4%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R+LS  K    ++++  I T++    ++  K   ++P  + E+Q   L+      T 
Sbjct: 66  SQARALSACKRLYIWMEREGIRTDNPTCLLKPPKIDKNIPTLITEQQISRLLAAPDTDTP 125

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
           H       R+ A+L L+Y  GLR+SEA+ L   N+  D+  +   GKGDK R+VP+    
Sbjct: 126 H-----GLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQES 180

Query: 207 RKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              +  YY +  P  L       LF   +   ++  +    +++     G+    + H+L
Sbjct: 181 AYWVGRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIG-HISPHSL 239

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           RH+FATHL+ +G DLR +Q +LGH  L+TTQIYT+V +     W+  +  + H
Sbjct: 240 RHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANV----WLQGVVKEHH 288


>gi|294677399|ref|YP_003578014.1| tyrosine recombinase XerD [Rhodobacter capsulatus SB 1003]
 gi|294476219|gb|ADE85607.1| tyrosine recombinase XerD [Rhodobacter capsulatus SB 1003]
          Length = 318

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 127/278 (45%), Gaps = 20/278 (7%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T+ +Y  D   FL F      + IT      L    +  ++ +   + +   +  R+  G
Sbjct: 27  TIAAYGRDLSDFLDFTTAKGLDLIT------LDRAAVEDWLVRLEAEGLAKATRARAALG 80

Query: 95  IKSFLKYLK-KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            ++ L      R     +  L +    K+  LP+ L+ ++   L++          + I 
Sbjct: 81  GEAILPASPMTRAGGRTTPTLQISGPGKAQRLPKTLSIEEVEALLEAGRDQGRSPAEQI- 139

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            RN  ++ LLY  G+R+SE + L       + + L ++GKGDK R+VPL    R+A+  +
Sbjct: 140 -RNRCLMELLYATGMRVSELVGLPVAAARGNPAMLMVRGKGDKERMVPLSAPAREALAAW 198

Query: 214 Y---DLCPFDLNLNIQLPLFR------GIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAH 263
               D       +  +LP  R      G  G     G F   ++ +    GL P   T H
Sbjct: 199 LATRDAAEEAARIARRLPPSRFLFPSSGKEGHLTRQG-FHALLKDIALAAGLDPARVTPH 257

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            LRH+FATHLL  G DLR IQ++LGH  LSTT+IYT+V
Sbjct: 258 VLRHAFATHLLQGGADLRVIQTLLGHADLSTTEIYTHV 295


>gi|332295545|ref|YP_004437468.1| Tyrosine recombinase xerC [Thermodesulfobium narugense DSM 14796]
 gi|332178648|gb|AEE14337.1| Tyrosine recombinase xerC [Thermodesulfobium narugense DSM 14796]
          Length = 306

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 131/286 (45%), Gaps = 16/286 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K    ++  L   RG S+ T+ SY  D + F  F      + + I+ +  L Y+      
Sbjct: 11  KALHAFVSYLFFIRGYSENTVNSYRSDIKSFFNFFKDRINDTVDIEKL-LLYYSNYLI-- 67

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
               +      SL+R L  IK FL +   ++   +  I ++   KK   LP  L+     
Sbjct: 68  ----SNNYKASSLERKLVAIKQFLIF-SFQEGYYKGKIPDIVLPKKDKRLPFFLSRSDIF 122

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            + + +       +K    R+  I  +LY  G+RISE L+L   N+  +   +R+ GKG 
Sbjct: 123 NIFNFI-----SNSKQFTIRDLLIFKMLYFTGMRISELLNLKIDNVNFESMDIRVLGKGS 177

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RI+P    +      Y       L    +  +F   +GKPL+     +  +++  +L 
Sbjct: 178 KERIIPFHRDILDLFNSYLIFRQESLKPKCE-NIFVNSKGKPLSRQYIWKMCKKVGNFLN 236

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           L L    H  RHS ATHLLS G  +++IQ ILGH  +STTQIYT++
Sbjct: 237 LELH--PHIFRHSLATHLLSGGASIKTIQEILGHESISTTQIYTHL 280


>gi|261366946|ref|ZP_05979829.1| tyrosine recombinase XerC [Subdoligranulum variabile DSM 15176]
 gi|282571064|gb|EFB76599.1| tyrosine recombinase XerC [Subdoligranulum variabile DSM 15176]
          Length = 359

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 149/301 (49%), Gaps = 27/301 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY---------TEE----KITIQTIRQLS 67
           +L  L+  +  S  T+  Y  D R F  ++             EE    KI  + I  + 
Sbjct: 26  YLHYLDFVKLRSPRTVNGYYLDLRGFFRYMMIQWGRADATAKPEEIDLTKIDSKDIAGIG 85

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL--KKRKITTESNILNMRNLKKSNSL 125
             +I  ++   R+   G ++  R LS +K F  Y+  +  KIT +    N+       +L
Sbjct: 86  KRDIFGYLDYARSANNGSKARARKLSALKGFFGYMCTQVNKITQDPT-ENVSLGAPKKTL 144

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P+ L E ++L L++N+      ++ + + R+  I+ L   CG+R++E +S+   +  DD 
Sbjct: 145 PKYLTESESLELLNNI------QSDFYE-RDFCIITLFLNCGMRLAELVSIDLGDFRDD- 196

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQ 244
            T+RI GKG K R+V L  + ++A+  Y  +    +NL+ +  LF   R GK L     +
Sbjct: 197 -TIRITGKGGKERLVYLNDACKQALERYAKVRGGLVNLSDKDALFVSKRTGKRLTARRVE 255

Query: 245 RYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           + + +  +  GL     + H LRH+ AT +   G D+ +++ ILGH  +STTQIYT++N 
Sbjct: 256 QIVARCLQSAGLSGRGFSPHKLRHTAATLMYQGGVDMLALKEILGHENVSTTQIYTHINQ 315

Query: 304 K 304
           +
Sbjct: 316 Q 316


>gi|328462457|gb|EGF34479.1| tyrosine recombinase xerD [Lactobacillus rhamnosus MTCC 5462]
          Length = 182

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 87/159 (54%), Gaps = 3/159 (1%)

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
           TK +  R+ AI  L+Y  GLR+SE + L    +    + L++ GKGDK R+VP+ P    
Sbjct: 7   TKPLGLRDRAIFELMYATGLRVSEVVGLRLDQLHLAMNLLQVTGKGDKERLVPISPQAAD 66

Query: 209 AILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            +  Y       L +  Q P  +F    G  L      + ++     +G+    T HTLR
Sbjct: 67  WVNRYLQESRPRL-IKHQQPKAVFVNFHGHALTRQAIWKNLKAYIASVGIEKDVTPHTLR 125

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           HSFAT LL NG DLR +Q +LGH  +STTQIYT++++++
Sbjct: 126 HSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQH 164


>gi|325136023|gb|EGC58633.1| tyrosine recombinase XerD [Neisseria meningitidis M0579]
 gi|325202450|gb|ADY97904.1| tyrosine recombinase XerD [Neisseria meningitidis M01-240149]
 gi|325207798|gb|ADZ03250.1| tyrosine recombinase XerD [Neisseria meningitidis NZ-05/33]
          Length = 291

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 117/233 (50%), Gaps = 11/233 (4%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R+LS  K    ++++  I T++    ++  K   ++P  + E+Q   L+      T 
Sbjct: 66  SQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTDTP 125

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
           H       R+ A+L L+Y  GLR+SEA+ L   N+  D+  +   GKGDK R+VP+    
Sbjct: 126 H-----GLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQES 180

Query: 207 RKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              +  YY +  P  L       LF   +   ++  +    +++     G+    + H+L
Sbjct: 181 AYWVERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYASQAGIG-HISPHSL 239

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           RH+FATHL+ +G DLR +Q +LGH  L+TTQIYT+V +     W+  +  + H
Sbjct: 240 RHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANV----WLQGVVKEHH 288


>gi|327398234|ref|YP_004339103.1| integrase family protein [Hippea maritima DSM 10411]
 gi|327180863|gb|AEA33044.1| integrase family protein [Hippea maritima DSM 10411]
          Length = 283

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 106/207 (51%), Gaps = 17/207 (8%)

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           +K+  ++ +  E     +   KK + LP+ L++K+   + D     TS      + ++  
Sbjct: 74  IKFYYEKVMGGEKQYYELHRPKKEHKLPKVLSKKEVKIIFDV----TS------NLKHKC 123

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLC 217
           IL L+Y  GLR SE L+L P +I  ++  + I G KG K RI  L  ++   +L+YY   
Sbjct: 124 ILMLIYSAGLRRSEPLNLAPTDIDSERMIIHINGAKGKKDRISLLSDNLLNLLLKYYK-- 181

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
                   Q  LF G +G   +P      +++     G+  + T H LRHSFATHLL  G
Sbjct: 182 ----EYRPQKYLFEGQKGGMYSPTSIANILKKAAIKAGIKKTVTPHMLRHSFATHLLEQG 237

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSK 304
            DLR IQ +LGH    TT+IYT+V+ K
Sbjct: 238 TDLRYIQELLGHESSKTTEIYTHVSKK 264


>gi|302872232|ref|YP_003840868.1| tyrosine recombinase XerD [Caldicellulosiruptor obsidiansis OB47]
 gi|302575091|gb|ADL42882.1| tyrosine recombinase XerD [Caldicellulosiruptor obsidiansis OB47]
          Length = 291

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 145/302 (48%), Gaps = 18/302 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +  +L+ +   S+ T+ SY  D ++++ FL      KI ++   Q   T I   IS +
Sbjct: 5   EAFCDHLQKQNRFSQNTISSYLRDAKKYIEFL---DNMKIKLENTSQA--TLIAYIISMQ 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           ++ K  + ++ R++  +K F  +LK +KI     I  +   K   + P+ L   +     
Sbjct: 60  KSGK-SNSTIARAIVSLKVFYDFLKTQKIIDIGKI-EIEPPKLEKNPPQILTRDEV---- 113

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL    E      R+ A+L +LY  G+R+SE ++L   +I  +   +  + K  + R
Sbjct: 114 -EKLLSCPKEEDIKGIRDKAMLEVLYATGIRVSELINLNLDDINLEHGYIICKNK-KRDR 171

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           ++P+      A+ +Y     P+      +  LF    G+ +    F + ++   +  G+ 
Sbjct: 172 VIPIGSYAISAVEKYLRHSRPYLAKSKNEEALFLNFNGERMTRQGFWKIVKFYAQSAGID 231

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T H LRHSFA HL+ NG D+R++Q +LGH  +STTQ Y  V +      + E+Y +T
Sbjct: 232 KEITPHVLRHSFAIHLIENGADVRAVQQMLGHADISTTQRYLQVANVK----LKEVYQKT 287

Query: 318 HP 319
           HP
Sbjct: 288 HP 289


>gi|325286409|ref|YP_004262199.1| integrase family protein [Cellulophaga lytica DSM 7489]
 gi|324321863|gb|ADY29328.1| integrase family protein [Cellulophaga lytica DSM 7489]
          Length = 297

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 104/192 (54%), Gaps = 27/192 (14%)

Query: 120 KKSNSLPRALNEKQA---LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           +K+  LP+ L+ ++    +T+ +N+             ++  IL ++YGCGLRISE ++L
Sbjct: 114 RKAKKLPKVLSLQEVADIITVTNNI-------------KHKTILKMIYGCGLRISECVNL 160

Query: 177 TPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
             ++I  D + +R+     KG+K RI  L P++   +  YY      +    +  LF G 
Sbjct: 161 KVEDI--DSNNMRVWVRNAKGNKDRITLLSPTMLAQLRAYY------IVYKPKKWLFEGA 212

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            GK  +    ++   + ++   + +  T HTLRHSFATHLL  G +LR IQ +LGH    
Sbjct: 213 DGKQYSASSIRQVFNRSKKKARVHMPATVHTLRHSFATHLLDAGTNLRYIQKLLGHNSSK 272

Query: 294 TTQIYTNVNSKN 305
           TT+IYT+V++ N
Sbjct: 273 TTEIYTHVSTTN 284


>gi|295085443|emb|CBK66966.1| tyrosine recombinase XerC subunit [Bacteroides xylanisolvens XB1A]
          Length = 293

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 145/301 (48%), Gaps = 13/301 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  L+ ER  S+ T+ +Y  D +Q    L  + +E+       ++    IR +I   
Sbjct: 4   ESFLDYLQYERNYSEKTVLAYGEDIKQ----LQEFAQEEYGKFNPLEVEAELIREWIVSL 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S+ R LS +++F KYL ++  TT   +  ++  K    LP  L E +   L+
Sbjct: 60  MDKGYTSTSVNRKLSSLRTFYKYLLRQGETTIDPLRKIKGPKNKKPLPVFLKENEMNRLL 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D     T     +   R+  I+ + Y  G+R+SE + L  +++    S L++ GK +K R
Sbjct: 120 D----ETDFGEGFKGCRDRLIIEMFYATGMRLSELIGLDNKDVDFSASLLKVTGKRNKQR 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++P    +++ +LEY  +    +    +    R    +     V+    R L +   L  
Sbjct: 176 LIPFGDELQELMLEYISVRNETIPERSEAFFIRENGERLYKNLVYNLVKRNLSKVATLK- 234

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FAT +L+N  +L +++ +LGH  ++TT+IYT+   +     + ++Y Q H
Sbjct: 235 KKSPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIYTHATFEE----LKKVYKQAH 290

Query: 319 P 319
           P
Sbjct: 291 P 291


>gi|210619453|ref|ZP_03292039.1| hypothetical protein CLONEX_04273 [Clostridium nexile DSM 1787]
 gi|210148851|gb|EEA79860.1| hypothetical protein CLONEX_04273 [Clostridium nexile DSM 1787]
          Length = 288

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 136/281 (48%), Gaps = 28/281 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRS 87
           RGL+  T++SY      +  FL       +  ++   +++ E+R F+   + T+ + DR+
Sbjct: 15  RGLTDHTIKSYSTYILAYFDFLT-----DVIHKSPEDVTWDEMRQFVRWLQDTRSLSDRT 69

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           +   +S ++ F  Y+  +    ++  L  R  K  N LP   ++++  T +  +      
Sbjct: 70  MNAVISQLRFFTIYVLHKPW--DATQLPFR--KFDNYLPYVPSQQEVKTFISTI------ 119

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLP 204
                D +  A++ L+Y  GLRI E   L  Q+I  ++  +RI    GK    R   L  
Sbjct: 120 ----PDLKQKAMVSLMYSSGLRIGEVCHLKYQDI--ERRNMRIHISHGKNRSDRYALLSK 173

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           +  + + +Y+    +D  ++   P  R  + +P++     R+I +  R LG P   T H+
Sbjct: 174 TALEILSQYW--FAYDKPVDWLFPKQRD-KSQPIDTFYLSRHIHEHERRLGWPERITCHS 230

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            RH+F THL  NG DL +IQ+ LGH  L++T IY ++ + +
Sbjct: 231 FRHAFGTHLYENGADLLTIQAYLGHKSLASTSIYVHLATNS 271


>gi|49474798|ref|YP_032840.1| integrase /recombinase xerD [Bartonella quintana str. Toulouse]
 gi|49240302|emb|CAF26784.1| Integrase /recombinase xerD [Bartonella quintana str. Toulouse]
          Length = 315

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 144/292 (49%), Gaps = 20/292 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY--TEIRAFISK 77
           ++L+ +  ERG S  TL +Y+ D +        + ++++++ ++   S    ++   +S 
Sbjct: 9   HFLEMMSAERGASTHTLAAYQHDLQ--------WAQDELSLHSVSLFSAQKEDLIGLLSL 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    S  R LS ++ F ++L    +  +    ++   ++   LP+ ++E     L
Sbjct: 61  MHILGFAASSQARRLSTLRQFYRFLYAEGMRVDDPSHDLDAPRQGRPLPKVISEDGVTKL 120

Query: 138 VDNVLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +D   L  +      +  +   R   ++ +LY  GLRISE +SL  Q +   + ++ ++G
Sbjct: 121 LDLAQLEVNQADYGSKDHFRALRLQVLIEMLYATGLRISELVSLPVQAVRGKEYSILVRG 180

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF--RGIRGKPLNPGVFQRYIRQL 250
           KG K RIV L     + + ++  L     +    L LF  R   G  +   V  R ++ L
Sbjct: 181 KGKKERIVLLSKKACQVLSQWLSLRDQRKD-AASLYLFPARSETGY-IARQVVARELKGL 238

Query: 251 RRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            +  G+  S  + H LRH+FA+HLL NG DLR++Q +LGH  ++TTQIYT+V
Sbjct: 239 AKRAGIKSSGFSPHVLRHAFASHLLQNGADLRAVQHLLGHSDIATTQIYTHV 290


>gi|163733378|ref|ZP_02140821.1| phage integrase family protein [Roseobacter litoralis Och 149]
 gi|163736004|ref|ZP_02143430.1| phage integrase family protein [Roseobacter litoralis Och 149]
 gi|161390729|gb|EDQ15072.1| phage integrase family protein [Roseobacter litoralis Och 149]
 gi|161393166|gb|EDQ17492.1| phage integrase family protein [Roseobacter litoralis Och 149]
          Length = 332

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 128/288 (44%), Gaps = 24/288 (8%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI---SKRRTQKIG 84
           +R  S+ T++SY    R FL F+A    + +   T+ +L+  E+ AF+      R   IG
Sbjct: 21  QRNASQHTVKSYRDTWRLFLRFVAVRCGKPVVRLTLSELTAAEVIAFLHHLESVRGDTIG 80

Query: 85  DRSLKRSLSGIKSFLKYLKKRK---ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            R+ +  L+ ++SF  ++  R+   +   + ++N+   K     P  L  ++        
Sbjct: 81  TRNCR--LAALRSFFGFVATREPELMAQCAEVMNVPTKKAPIRAPDYLEPEEV-----QA 133

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIV 200
           +L     +  I  R+  +L  LY  G RI EAL L PQ I  +    +R+ GKG K RI 
Sbjct: 134 ILAQPDRSTLIGQRDHTLLSFLYNTGARIQEALDLCPQAIRFEAPGCVRLYGKGRKERIS 193

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           PL P     +       P   +      LF    G PL+    +  + +  +   + + T
Sbjct: 194 PLWPETVALLRSLLKRVPRPADAA----LFVNRYGSPLSASGVRFKLAEYVKAAAVDVPT 249

Query: 261 ------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                 T H+ RH+ A HL++ G D+  I+S LGH  L TT  Y   N
Sbjct: 250 LAQKHVTPHSFRHATAVHLVAAGVDVTVIRSWLGHVSLETTNHYAQAN 297


>gi|220921142|ref|YP_002496443.1| tyrosine recombinase XerD [Methylobacterium nodulans ORS 2060]
 gi|219945748|gb|ACL56140.1| tyrosine recombinase XerD [Methylobacterium nodulans ORS 2060]
          Length = 308

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 135/290 (46%), Gaps = 19/290 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L  L  ERG S  TL +Y  D   +L  LA    +   ++         IRA+++  
Sbjct: 13  QPYLDMLAAERGASANTLAAYRRDLDDYLAHLAAEGLDPAAVEA------PMIRAYMADL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA---L 135
             + +   S  R LS I+ F ++L             +   K+  +LP+ L+  +    L
Sbjct: 67  DARGLKASSAARRLSCIRGFHRFLYAEGYAPTDPTAPVSGPKRGRALPKVLSVAEVDRLL 126

Query: 136 TLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           ++    +    + ++   A R   +L LLY  GLR+SE ++L     +  +  L ++GKG
Sbjct: 127 SVAKEAVAQAPNLSEAARAQRLLCLLELLYATGLRVSELVALPRAAALTRERYLVVRGKG 186

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRG-IRGKPLNPGVFQRYIRQLRR 252
            + R+VPL  + R A+  +  +      L    P LF        L    F R ++    
Sbjct: 187 GRERLVPLTEAARAAMAAHLTM------LAAPGPWLFPADSESGHLTRQAFARDLKLAAA 240

Query: 253 YLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             G+     + H LRH+FA+HLL NG DLR +Q +LGH  +STTQIYT+V
Sbjct: 241 AAGIRADRVSPHVLRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHV 290


>gi|291561258|emb|CBL40057.1| tyrosine recombinase XerD subunit [butyrate-producing bacterium
           SS3/4]
          Length = 284

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 146/300 (48%), Gaps = 23/300 (7%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +E E+  SK T  SY+ D    L+ +A Y EE   I    +++ T + ++I     +   
Sbjct: 1   MEEEKHASKNTTLSYQRD----LLKMADYLEEN-GITDCGKVTKTALNSYILFLEKEGKA 55

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--L 142
             ++ R+L+  +SF  +L K     E  I   R+   S   P+   +   +  VD V  L
Sbjct: 56  ASTVSRALASTRSFFGWLFK-----EGRI--RRDPADSMHAPKIEKKVPVILTVDEVTKL 108

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-KIRIVP 201
           L         + R+ A+L LLY  G+R++E ++L   ++  + S   I  + + K R++P
Sbjct: 109 LEQPSGANPKEIRDKAMLELLYATGIRVTELVNLKLSDV--NMSIGFITCRDEHKERMIP 166

Query: 202 LLPSVRKAILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
              + + A+ +Y +     F      +L LF    G+ ++   F + I+      G+   
Sbjct: 167 FGHAAKDALAKYLESASETFLKGTRSEL-LFTNYSGRAMSRQGFWKIIKYYGERAGIEED 225

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T HTLRHSFA HLLSNG D+R++Q+++GH  L++TQ+YT     +    + E Y   HP
Sbjct: 226 ITPHTLRHSFAAHLLSNGADMRAVQTMMGHSDLASTQMYTAYAMDSA---VREAYQGAHP 282


>gi|309389348|gb|ADO77228.1| integrase family protein [Halanaerobium praevalens DSM 2228]
          Length = 312

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 153/318 (48%), Gaps = 21/318 (6%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ--TIRQL 66
           I     L+    + + L++E+G S+LT++ Y  D  Q   +L    + K   +   + +L
Sbjct: 4   ISELNFLQALNKFKKYLKVEKGYSQLTIKEYNSDLNQLHKYLKEELDFKADFKPAEVDRL 63

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL- 125
             +E  A        K   R+  R L  I+SF KYL    I  ++    + + K    L 
Sbjct: 64  DISEFLADAVIINDNKAVTRN--RKLFAIRSFYKYLLHYGIVNQNPAEAIESSKTEIRLE 121

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           P  L  K+A   ++ +      E   I+  R+ AI+ L    GLRISE ++L   N+  +
Sbjct: 122 PIYLKLKEAKQFINAI-----SENGGINRLRDLAIVKLFLYAGLRISELVNLDFDNLDFE 176

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-----LPLFRGIRGKPLN 239
             +++  GKG+K R VPL   V  AI +Y    P   ++ I+       +F    GK ++
Sbjct: 177 DCSIKFYGKGNKERYVPLHHDVILAIKKY---LPERNSIKIKENDARQAIFISRHGKRIS 233

Query: 240 PGVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           P   Q ++++  +  GL  +   T H LRH+FA+ L     D++ +Q +LGH  LSTTQI
Sbjct: 234 PRTIQLFVKKYAKKSGLGRADKITPHKLRHTFASTLYRQTKDIKVVQDLLGHANLSTTQI 293

Query: 298 YTNVNSKNGGDWMMEIYD 315
           YT+V+++     + E+ D
Sbjct: 294 YTHVDTEEKKSAIDEMPD 311


>gi|261392878|emb|CAX50459.1| tyrosine recombinase XerD [Neisseria meningitidis 8013]
 gi|325144209|gb|EGC66516.1| tyrosine recombinase XerD [Neisseria meningitidis M01-240013]
 gi|325203840|gb|ADY99293.1| tyrosine recombinase XerD [Neisseria meningitidis M01-240355]
 gi|325206404|gb|ADZ01857.1| tyrosine recombinase XerD [Neisseria meningitidis M04-240196]
          Length = 291

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 117/233 (50%), Gaps = 11/233 (4%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R+LS  K    ++++  I T++    ++  K   ++P  + E+Q   L+      T 
Sbjct: 66  SQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTDTP 125

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
           H       R+ A+L L+Y  GLR+SEA+ L   N+  D+  +   GKGDK R+VP+    
Sbjct: 126 H-----GLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQES 180

Query: 207 RKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              +  YY +  P  L       LF   +   ++  +    +++     G+    + H+L
Sbjct: 181 AYWVERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYASQAGIG-HISPHSL 239

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           RH+FATHL+ +G DLR +Q +LGH  L+TTQIYT+V +     W+  +  + H
Sbjct: 240 RHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANV----WLQGVVKEHH 288


>gi|332295804|ref|YP_004437727.1| Tyrosine recombinase xerC [Thermodesulfobium narugense DSM 14796]
 gi|332178907|gb|AEE14596.1| Tyrosine recombinase xerC [Thermodesulfobium narugense DSM 14796]
          Length = 298

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 138/285 (48%), Gaps = 11/285 (3%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L+  +  S  T+++Y  D   +  FL   ++  +    I +L+Y  +   I  + 
Sbjct: 10  DFLDYLQFSKLCSNNTIRAYRSDLISWFEFLK-NSKNNLNELEITKLTYDWL---IEDQN 65

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           ++ +   S+ R +S +KSFL YL K  +      L ++N KK   LP+ LN       V 
Sbjct: 66  SKLLKKSSVSRKISAVKSFLNYLYKFNVINNKLSLTLKNPKKDRILPKYLNYSD----VA 121

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           +V+      + +   RNS I+ LL+  G+RISE  ++  ++I  D++ +R+ GKG+K R+
Sbjct: 122 DVINKNFTSSNFYSFRNSLIILLLFNTGIRISELKNIKLEDINLDRNEIRVIGKGNKERV 181

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           V    +  K  L+ Y      L    +      ++ +     +  RYI           S
Sbjct: 182 V-FFTNFTKNFLKQYITERLKLKTKCRYLFISRLKSRISERMI--RYIVSNTWKTQTGKS 238

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            T H LRHS AT LL+ G +L+ IQ ILGH  ++TT IY  +  K
Sbjct: 239 ITPHQLRHSLATFLLNQGVELKYIQEILGHENINTTNIYAKLTEK 283


>gi|325673461|ref|ZP_08153152.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707]
 gi|325555482|gb|EGD25153.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707]
          Length = 313

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 142/324 (43%), Gaps = 28/324 (8%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           + LP ++   L     ++ + L +ERG S+ T+++Y  D    L FL     + +    +
Sbjct: 8   SQLPPLLRMHL----DDYDEYLRLERGRSEHTVRAYRADVAGLLGFLCRDRPDAV----L 59

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
             L    +RA+++ +        +L R  S  K F  + ++         + +   K   
Sbjct: 60  ADLDLRVLRAWLAAQAAAGTARTTLARRTSSAKGFTAWAERTGRMPVDPGIRLVAPKAHR 119

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           +LP  L ++QA   +       + E   +  R+  I+ LLY  G+R+ E   L   +I  
Sbjct: 120 TLPPVLRQEQAAEAMVAAESGAAQEDP-VAVRDRLIVELLYSTGIRVGELCGLDLGDIDH 178

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           D+  LR+ GKGDK R+VP       AI  +        +   +L   R      L     
Sbjct: 179 DRRVLRVLGKGDKERVVPFGRPAEDAIGAWL------RSGRPELVNERSGDALLLGRRGG 232

Query: 244 QRYIRQLRRYL--------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           +   RQ R  +        G P     H LRHS ATHLL  G DLR +Q +LGH  L+TT
Sbjct: 233 RLDQRQARAVVHDVVQAVPGAP-DLAPHGLRHSAATHLLEGGADLRVVQELLGHSSLATT 291

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHP 319
           Q+YT+V+       +  ++DQ HP
Sbjct: 292 QLYTHVSVAR----LRAVHDQAHP 311


>gi|153805941|ref|ZP_01958609.1| hypothetical protein BACCAC_00181 [Bacteroides caccae ATCC 43185]
 gi|149130618|gb|EDM21824.1| hypothetical protein BACCAC_00181 [Bacteroides caccae ATCC 43185]
          Length = 293

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 147/307 (47%), Gaps = 25/307 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  L  ER  S+ T+ +Y  D +Q    L  + +E+       ++    IR +I   
Sbjct: 4   KSFLDYLRYERNYSEKTVLAYSEDIKQ----LQEFAQEEYGRFNPLEVEAELIREWIVSL 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S+ R LS ++SF KYL ++   T+  +  +   K    LP  L E +   L+
Sbjct: 60  MDRGYTSTSVNRKLSSLRSFYKYLLRQGEVTKDPLCKITGPKNKKPLPVFLKESEMNKLL 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D     T     +   R+  I+ + Y  G+R+SE + L  +++    S L++ GK +K R
Sbjct: 120 D----ETDFGEGFKGYRDRLIIEVFYATGIRLSELIGLDDKDVDFSASLLKVTGKRNKQR 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPG-VFQRYIRQLRR 252
           ++P    +R+ +L Y ++       N  +P      F    G+ L    V+    R L +
Sbjct: 176 LIPFGDELRELMLGYINIR------NEMIPERSEAFFVRENGERLYKNLVYNLVKRNLSK 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            + L    + H LRH+FAT +L+N  +L +++ +LGH  ++TT+IYT+   +     + +
Sbjct: 230 VVTLK-KRSPHVLRHTFATTMLNNDAELGAVKELLGHESIATTEIYTHATFEE----LKK 284

Query: 313 IYDQTHP 319
           +Y Q HP
Sbjct: 285 VYKQAHP 291


>gi|332653284|ref|ZP_08419029.1| tyrosine recombinase XerC [Ruminococcaceae bacterium D16]
 gi|332518430|gb|EGJ48033.1| tyrosine recombinase XerC [Ruminococcaceae bacterium D16]
          Length = 342

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 153/315 (48%), Gaps = 38/315 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF----------YTE---EKITIQTIRQ 65
           +++L   E  +G S+ T+  Y  D R F  FL            + E   + + +  +R 
Sbjct: 13  RDFLVYHETIQGHSRATVDEYFLDLRSFFRFLKLDKGRVAKDTPFDEISIDDVDLDLVRG 72

Query: 66  LSYTEIRAF---ISKRRTQKIGDRSLKRSLSGIK---------SFLKYLK-KRKITTESN 112
           ++ +++ A+   +S+ R            L+            SF KYL  K K+ TE+ 
Sbjct: 73  VTLSDVYAYMNYLSRDRAVHPNSSDAHYGLAPAARARKAAAIRSFYKYLSSKAKLITENP 132

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           + ++   +   +LPR LN  +++ L+       SH       R+  IL L   CGLRISE
Sbjct: 133 MQDLDAPRLKKTLPRYLNLDESVELL-------SHVDGPNQVRDYCILTLFLNCGLRISE 185

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
            + L   ++  DQ  LR+ GKG+K R++ L  + R A+ ++  +    L L  Q  LF  
Sbjct: 186 LIGLNVTDVRGDQ--LRVLGKGNKERVLFLNEACRSALDDWM-MERSTLTLLDQNALFVT 242

Query: 233 IRGKP-LNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
            R +  +      + +++     GL  +  ++H LRH+ AT +L NG D+R++Q +LGH 
Sbjct: 243 PRNRQRITRAAVHKLVKKHLSAAGLDSTKYSSHKLRHTAATLMLQNGVDVRTLQEVLGHD 302

Query: 291 RLSTTQIYTNVNSKN 305
            L+TTQIYT+V++ +
Sbjct: 303 HLNTTQIYTHVDNDD 317


>gi|300741219|ref|ZP_07071240.1| tyrosine recombinase XerD [Rothia dentocariosa M567]
 gi|300380404|gb|EFJ76966.1| tyrosine recombinase XerD [Rothia dentocariosa M567]
          Length = 320

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 116/252 (46%), Gaps = 24/252 (9%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +G  S+ R+++ ++    +    +I        ++  K    LP+A++ +Q   L+    
Sbjct: 72  LGPNSIARTMAAVRGAHSFWHASRILETDPAAAVKPPKNVKRLPKAVSVEQMQKLLAIPS 131

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM------DDQST-------LR 189
           L T         RN AIL  LY  G R+SE L+    +I       D+          +R
Sbjct: 132 LKTP-----TGLRNRAILEFLYATGARVSEMLATDLDDIHLGEKPRDENGEFIAVPGYVR 186

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           + GKG K R+VPL    ++A+ +Y       F  +      LF   RG  L        +
Sbjct: 187 LFGKGGKERLVPLGSYAQRALEDYIVRARPKFASHGKGTAALFLNGRGSRLGRQGAWLIL 246

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++     GL    + H++RHSFATHL+  G D+R +Q +LGH  ++TTQ+YT V  +   
Sbjct: 247 KETAEEAGLSSDFSPHSIRHSFATHLVQGGADIRVVQELLGHASIATTQVYTKVTPEG-- 304

Query: 308 DWMMEIYDQTHP 319
             M+E+Y   HP
Sbjct: 305 --MLEVYRMAHP 314


>gi|120435586|ref|YP_861272.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|120435706|ref|YP_861392.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|117577736|emb|CAL66205.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|117577856|emb|CAL66325.1| phage integrase family protein [Gramella forsetii KT0803]
          Length = 337

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 142/310 (45%), Gaps = 28/310 (9%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKI------TIQTIRQLSYTEIRAFISKRRTQ 81
           ERG S  T+ +Y  DT  F++ L F  +EK+      T+  I++ +  E   +I K R  
Sbjct: 21  ERGASVNTITAYR-DT--FVLLLDFIEKEKLLKVEKLTLAKIKKETIIEFLDWIQKER-- 75

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD-- 139
           K  D +    L+ I SF +YL+        N+ N+   +K  S+      K+++T +   
Sbjct: 76  KCSDSTRNMRLAAIHSFYRYLQY------ENLDNLHECQKVLSIRSKKTRKESITYLSIE 129

Query: 140 --NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDK 196
              +LL     T     R+ A+L L Y  G R+ E + LTP  + +     ++I GKG++
Sbjct: 130 GIRLLLQQPDTTTTRGRRDLALLSLTYDTGARVQEIIDLTPSRLRLGKPPVIKIIGKGNR 189

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQRYIRQLRR 252
           +R+VP+L +    +  Y +    D       PLF   R +         +  +Y+   R+
Sbjct: 190 VRLVPMLDAQIIHLKNYMEEHRLDQPTANIHPLFFNSRKEKFTRAGINHILHKYMDMARK 249

Query: 253 YLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                +P   + H+ RHS A HLL  G +L  I+ ILGH  + TT+IY   +S+     +
Sbjct: 250 ADNTLIPDKASCHSFRHSKAMHLLQAGVNLVYIRDILGHVSVQTTEIYARADSRQKRKAL 309

Query: 311 MEIYDQTHPS 320
              Y   +P 
Sbjct: 310 ENAYVDINPD 319


>gi|213417883|ref|ZP_03350981.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 186

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 91/165 (55%), Gaps = 6/165 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A+L ++YG GLR+SE + L  +++  D   + + GKG K R +P+  +    I  + 
Sbjct: 22  RDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWL 81

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           DL    L  + +  LF    GK ++    Q+   +     GL      H LRHSFATH+L
Sbjct: 82  DLRG--LFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHML 139

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + GDLR +Q +LGH  LSTTQIYT+++ ++    +  +YD  HP
Sbjct: 140 ESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 180


>gi|298386165|ref|ZP_06995722.1| tyrosine recombinase XerC [Bacteroides sp. 1_1_14]
 gi|298261393|gb|EFI04260.1| tyrosine recombinase XerC [Bacteroides sp. 1_1_14]
          Length = 293

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 144/301 (47%), Gaps = 13/301 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  L  ER  S+ T+ +Y  D +Q    L  + +E+       ++    IR +I   
Sbjct: 4   KSFLDYLRYERNYSEKTVLAYGEDIKQ----LQEFAQEEYGKFDPLEVEGELIREWIVSL 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S+ R LS ++SF KYL ++   T   +  +   K    LP  L E +   L+
Sbjct: 60  MDRGYTSTSVNRKLSSLRSFYKYLLRQGEVTVDPLRKITGPKNKKPLPVFLKENEMDKLL 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D+    T     +   R+  I+ + Y  G+R+SE + L  +++    S L++ GK +K R
Sbjct: 120 DD----TDFGEGFKGCRDRLIIEMFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQR 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++P    +++ +LEY ++    +    +    +   G+     V+    R L +   L  
Sbjct: 176 LIPFGDELKELMLEYINVRNEAIPERSKAFFIKEDGGRLYKNLVYNLVKRNLSKVATLK- 234

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FAT +L+N  +L +++ +LGH  ++TT+IY +   +     + ++Y Q H
Sbjct: 235 KRSPHVLRHTFATTMLNNDAELGAVKELLGHESIATTEIYAHATFEE----LKKVYKQAH 290

Query: 319 P 319
           P
Sbjct: 291 P 291


>gi|161869695|ref|YP_001598862.1| integrase/recombinase [Neisseria meningitidis 053442]
 gi|161595248|gb|ABX72908.1| integrase/recombinase [Neisseria meningitidis 053442]
          Length = 291

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 117/233 (50%), Gaps = 11/233 (4%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R+LS  K    ++++  I T++    ++  K   ++P  + E+Q   L+      T 
Sbjct: 66  SQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTDTP 125

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
           H       R+ A+L L+Y  GLR+SEA+ L   N+  D+  +   GKGDK R+VP+    
Sbjct: 126 H-----GLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQES 180

Query: 207 RKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              +  YY +  P  L       LF   +   ++  +    +++     G+    + H+L
Sbjct: 181 AYWVERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYAGRAGIG-HISPHSL 239

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           RH+FATHL+ +G DLR +Q +LGH  L+TTQIYT+V +     W+  +  + H
Sbjct: 240 RHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANV----WLQGVVKEHH 288


>gi|169830964|ref|YP_001716946.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637808|gb|ACA59314.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 283

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 122/275 (44%), Gaps = 23/275 (8%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR-AFISKRRTQKIGDRS 87
           RGLS  T+ +Y    R F  +      E     ++  L   + R   ++K R       +
Sbjct: 11  RGLSVQTVGTYAAAVRAFAKWWEGTGGEAFDPASVSSLDVADYRRHLLNKNRKPA----T 66

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           +   L  + SF  +     +        +R +    S PR L  ++   LV  V  H + 
Sbjct: 67  VNLHLDALSSFFSWAVSTGLALIDPTEGVRRVPGQKSSPRWLTRRELGALVRAVQKHGA- 125

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLP 204
                 +R+ A++ LL   GLR+SEA+SL  Q+ +  + +  +   +GKG+K R VPL  
Sbjct: 126 ------SRDRALVALLLHAGLRVSEAVSLKVQDAVIRERSGHVAVRRGKGEKYREVPLNA 179

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           + RK I E+ D  P    L      F G  G P+ P   Q+ +++L R  G+    T H 
Sbjct: 180 TARKMIQEWLDGHPGGEYL------FPGRNGGPMTPRAVQKRLKELARLAGV--EVTPHK 231

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           LRH+F   L+  G  L  +  + GH  L+TT  YT
Sbjct: 232 LRHTFCKMLVDAGESLDRVAVLAGHANLNTTARYT 266


>gi|14520598|ref|NP_126073.1| integrase/recombinase xerd [Pyrococcus abyssi GE5]
 gi|73920473|sp|Q9V1P5|XERCL_PYRAB RecName: Full=Probable tyrosine recombinase xerC-like
 gi|5457814|emb|CAB49304.1| xerC/D integrase/recombinase protein [Pyrococcus abyssi GE5]
          Length = 286

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 148/297 (49%), Gaps = 35/297 (11%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDT-RQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++ER+  +++  IE   + L L+    +T R +  +++ + EE  +      L       
Sbjct: 1   MEEREERVRDDTIEEFATYLELEGKSRNTVRMYTYYISKFFEEGHSPTARDALR------ 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F++K + +    RSL   +  +K++ K+        +S    ++  K   +LP++L E++
Sbjct: 55  FLAKLKRKGYSTRSLNLVIQALKAYFKFE-----GLDSEAEKLKTPKMPKTLPKSLTEEE 109

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG- 192
              +++      + ET             LYG GLR+SE  +L  +++  +   + ++G 
Sbjct: 110 VRRIIN------AAETLRDRLILLL----LYGAGLRVSELCNLRVEDVNFEYGVIVVRGG 159

Query: 193 KGDKIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           KG K R+VP+  S+   I  Y     D  P+   L +++   +  R   L+P    R ++
Sbjct: 160 KGGKDRVVPISESLLSEIKRYLESRNDDSPY---LFVEM---KRKRKDKLSPKTVWRLVK 213

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +  R  G+ L  T H LRHSFATH+L  G D+R IQ +LGH  LSTTQIYT V++K+
Sbjct: 214 KYGRKAGVEL--TPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKH 268


>gi|323705319|ref|ZP_08116894.1| integrase family protein [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535221|gb|EGB24997.1| integrase family protein [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 288

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 146/301 (48%), Gaps = 20/301 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  L+ E+ LS  T++SY+ D  QF+ +L    E  I    + +++   I ++++  
Sbjct: 6   QAFIDFLKNEKKLSDNTVESYKRDITQFIGYLK---ENNIEYYDVNKIT---IISYLNFL 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + + +   ++ R LS IKSF +YL   K   +     +   K    +P  L+ +Q    V
Sbjct: 60  KHKNMSQSTISRHLSSIKSFYQYLFMNKFIDKEPAYTLDAPKIEKKVPLTLSVEQ----V 115

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D +L H   E      R+ AIL +LY  GL++SE +SL  +++  + +   I  K  K R
Sbjct: 116 DKLLSH-EFENSEKGLRDKAILEVLYATGLKVSELISLHIKDV--NLNYGYIYCKSSKER 172

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            +P+  S   A+  Y  +      ++    LF  +RG+PL      + I++    +    
Sbjct: 173 FIPIGDSALNALQNYISV---RRKIDQDEFLFLNLRGEPLTRQGCWKIIKEYTNIVNPGF 229

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             T   LR SFA H+L NG D+RS+Q ILG+   +   + + ++       + E+Y ++H
Sbjct: 230 DITPSILRKSFAKHMLENGADIRSVQEILGYKSFNQGDLISLISKSK----IKEVYKRSH 285

Query: 319 P 319
           P
Sbjct: 286 P 286


>gi|15676649|ref|NP_273793.1| integrase/recombinase XerD [Neisseria meningitidis MC58]
 gi|34223072|sp|Q9K068|XERD_NEIMB RecName: Full=Tyrosine recombinase xerD
 gi|7225980|gb|AAF41164.1| integrase/recombinase XerD [Neisseria meningitidis MC58]
 gi|325133733|gb|EGC56389.1| tyrosine recombinase XerD [Neisseria meningitidis M13399]
 gi|325140092|gb|EGC62621.1| tyrosine recombinase XerD [Neisseria meningitidis CU385]
          Length = 291

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 117/233 (50%), Gaps = 11/233 (4%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R+LS  K    ++++  I T++    ++  K   ++P  + E+Q   L+      T 
Sbjct: 66  SQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLAAPDTDTP 125

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
           H       R+ A+L L+Y  GLR+SEA+ L   N+  D+  +   GKGDK R+VP+    
Sbjct: 126 H-----GLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQES 180

Query: 207 RKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              +  YY +  P  L       LF   +   ++  +    +++     G+    + H+L
Sbjct: 181 AYWVERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYASQAGIG-HISPHSL 239

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           RH+FATHL+ +G DLR +Q +LGH  L+TTQIYT+V +     W+  +  + H
Sbjct: 240 RHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANV----WLQGVVKEHH 288


>gi|215412737|ref|ZP_03421449.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           94_M4241A]
 gi|298526363|ref|ZP_07013772.1| integrase/recombinase xerC [Mycobacterium tuberculosis 94_M4241A]
 gi|298496157|gb|EFI31451.1| integrase/recombinase xerC [Mycobacterium tuberculosis 94_M4241A]
          Length = 298

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 135/304 (44%), Gaps = 28/304 (9%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L ++ G S  T ++Y  D R    FLA          ++  L+ + +R++++        
Sbjct: 12  LALQCGRSVHTRRAYLGDLRSLFAFLADRGS------SLDALTLSVLRSWLAATAGAGAA 65

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +L R  S +K+F  +  +R +        ++  K   +LP  L + QAL  +      
Sbjct: 66  RTTLARRTSAVKAFTAWAVRRVLLAGDPAARLQVPKVRRTLPAELRQDQALRAM-AAAES 124

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            + +   +  R+  I+ LLY  G+R+SE   L   +I      +R+ GKG+K R VP   
Sbjct: 125 GAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVPFGQ 184

Query: 205 SVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL--------G 255
               A+  +  D     +       L  G RG+ L+       +RQ R  +        G
Sbjct: 185 PAADALHAWLVDGRRALVTAESGHALLLGARGRRLD-------VRQARTAVHQTVAAVDG 237

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            P     H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V        +  +++
Sbjct: 238 AP-DMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVAR----LRAVHE 292

Query: 316 QTHP 319
           + HP
Sbjct: 293 RAHP 296


>gi|312135537|ref|YP_004002875.1| tyrosine recombinase xerd [Caldicellulosiruptor owensensis OL]
 gi|311775588|gb|ADQ05075.1| tyrosine recombinase XerD [Caldicellulosiruptor owensensis OL]
          Length = 291

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 144/302 (47%), Gaps = 18/302 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +  +L+ +   S+ T+ SY  D ++++ FL      KI ++   Q   T I   IS +
Sbjct: 5   EAFCDHLQRQNRFSQNTISSYLRDAKKYIEFL---DNMKIKLENTSQA--TLIAYIISMQ 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           ++ K  + ++ R++  +K F  +LK +KI     I  +   K   + P+ L   +     
Sbjct: 60  KSGK-SNSTIARAIVSLKVFYDFLKTQKIIDIGKI-EIEPPKLEKNPPQILTRDEV---- 113

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL    E      R+ A+L LLY  G+++SE ++L   +I  +   +  + K  + R
Sbjct: 114 -EKLLSCPKEDDIKGIRDKAMLELLYATGIKVSELINLNLDDINLEHGYIICKNKK-RDR 171

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           ++P+      A+ +Y     P+      +  LF    G+ +    F + ++   +   + 
Sbjct: 172 VIPIGSYAISAVEKYLRYSRPYLAKSKDEEALFLNFNGERMTRQGFWKIVKFYAQSAEID 231

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T H LRHSFATHL+ NG D+R++Q +LGH  +STTQ Y  V        + E+Y +T
Sbjct: 232 KEITPHVLRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQV----ANVKLKEVYQKT 287

Query: 318 HP 319
           HP
Sbjct: 288 HP 289


>gi|29348151|ref|NP_811654.1| integrase, site-specific recombinase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253569574|ref|ZP_04846984.1| integrase [Bacteroides sp. 1_1_6]
 gi|29340054|gb|AAO77848.1| integrase, site-specific recombinase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251841593|gb|EES69674.1| integrase [Bacteroides sp. 1_1_6]
          Length = 293

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 146/306 (47%), Gaps = 23/306 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  L  ER  S+ T+ +Y  D +Q    L  + +E+       ++    IR +I   
Sbjct: 4   KSFLDYLRYERNYSEKTVLAYGEDIKQ----LQEFAQEEYGKFDPLEVEGELIREWIVSL 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S+ R LS ++SF KYL ++   T   +  +   K    LP  L E +   L+
Sbjct: 60  MDRGYTSTSVNRKLSSLRSFYKYLLRQGEVTVDPLRKITGPKNKKPLPAFLKESEMDKLL 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D+    T     +   R+  I+ + Y  G+R+SE + L  +++    S L++ GK +K R
Sbjct: 120 DD----TDFGEGFKGCRDRLIIGVFYATGIRLSELIGLDDKDVDFSASLLKVTGKRNKQR 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRY 253
           ++P    +++ +LEY ++       N  +P      F    G+ L   +    +++    
Sbjct: 176 LIPFGDELKELMLEYINVR------NETIPERSEAFFVKEDGERLYKNLVYNLVKRNLSK 229

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +      + H LRH+FAT +L+N  +L +++ +LGH  ++TT+IYT+   +     + ++
Sbjct: 230 VATLKKRSPHVLRHTFATTMLNNDAELGAVKELLGHESVATTEIYTHATFEE----LKKV 285

Query: 314 YDQTHP 319
           Y Q HP
Sbjct: 286 YKQAHP 291


>gi|160890772|ref|ZP_02071775.1| hypothetical protein BACUNI_03217 [Bacteroides uniformis ATCC 8492]
 gi|156859771|gb|EDO53202.1| hypothetical protein BACUNI_03217 [Bacteroides uniformis ATCC 8492]
          Length = 376

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 128/269 (47%), Gaps = 42/269 (15%)

Query: 61  QTIRQLSYTE--IRAFIS--KRRTQKIGDRSLK-----------------RSLSGIKSFL 99
           +T+RQL Y+E  +RA+ +  K   Q    R+L+                 R +S  +  L
Sbjct: 100 ETLRQLRYSEHTVRAYTTYFKEFQQYFAGRNLRYIRLEEINAYIVHLIDTRGISSCQQNL 159

Query: 100 -----KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
                K+  ++ +  E     ++  K+  +LP  L++++  +++D             D 
Sbjct: 160 RINSIKFYFEKVLGLERKCYEVKRAKRERTLPDVLSKEEIKSILDAT---------GPDI 210

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213
           R   +  LLY  GLRISE L L P +I   +S +R+ QGKG K R   L   + + + EY
Sbjct: 211 RLFCMFSLLYSAGLRISELLDLKPHDINVSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEY 270

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
             L         Q  LF   +G+P    +  + +++  +  G+      H LRHSFATHL
Sbjct: 271 AKL------YKPQEWLFERYKGEPFTESIVSKKLKEAAKEAGITKRVYPHLLRHSFATHL 324

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +  G DL+ ++ +LGH +L TT++Y +++
Sbjct: 325 IEQGTDLKIVKELLGHNQLKTTEMYVHIS 353


>gi|218767874|ref|YP_002342386.1| putative integrase/recombinase [Neisseria meningitidis Z2491]
 gi|34223068|sp|Q9JV76|XERD_NEIMA RecName: Full=Tyrosine recombinase xerD
 gi|121051882|emb|CAM08188.1| putative integrase/recombinase [Neisseria meningitidis Z2491]
 gi|319410121|emb|CBY90457.1| tyrosine recombinase XerD [Neisseria meningitidis WUE 2594]
          Length = 291

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 117/233 (50%), Gaps = 11/233 (4%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R+LS  K    ++++  I T++    ++  K   ++P  + E+Q   L+      T 
Sbjct: 66  SQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLAAPDTDTP 125

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
           H       R+ A+L L+Y  GLR+SEA+ L   N+  D+  +   GKGDK R+VP+    
Sbjct: 126 H-----GLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQES 180

Query: 207 RKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              +  YY +  P  L       LF   +   ++  +    +++     G+    + H+L
Sbjct: 181 AYWVGRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIG-HISPHSL 239

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           RH+FATHL+ +G DLR +Q +LGH  L+TTQIYT+V +     W+  +  + H
Sbjct: 240 RHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANV----WLQGVVKEHH 288


>gi|238063996|ref|ZP_04608705.1| tyrosine recombinase xerD [Micromonospora sp. ATCC 39149]
 gi|237885807|gb|EEP74635.1| tyrosine recombinase xerD [Micromonospora sp. ATCC 39149]
          Length = 336

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 144/318 (45%), Gaps = 28/318 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L +L +ERGLS  TL SY  D  ++L  L         I  +  ++   + A +++ 
Sbjct: 26  RGYLDHLTVERGLSANTLASYRRDLERYLATL-----TDAGIGDLASVAAGVVEAHLARL 80

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R    G   L  S +   +       R    E   L   +  +    P           V
Sbjct: 81  RAGDDGHPPLAVSSAARAASAVRGLHRFALREG--LAGADPSRDVRPPAPPRRLPRALAV 138

Query: 139 DNV--LLHTSHE-TKWIDA-----RNSAILYLLYGCGLRISEALSLTPQNI--MD-DQST 187
           D V  LL T+   T   D      R+ A+L  LYG G RISEA+     ++  +D  ++T
Sbjct: 139 DQVVRLLETAGPVTAAGDGAPLALRDRALLEFLYGTGARISEAVGAAIDDLDGLDTGEAT 198

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLP-LFRGIRGKPLNPGVFQR 245
           + ++GKG + R+VP+     +A+  +     P  +      P +F  +RG  L       
Sbjct: 199 VLLRGKGGRSRLVPVGGYAAEALRAWLVRGRPALVAAGRGTPAVFVNVRGGTLTRQGAWT 258

Query: 246 YIRQLRRYLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            +R+     GLP+    + + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQ+YT V
Sbjct: 259 ILRRAAERAGLPVDGANAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLV 318

Query: 302 NSKNGGDWMMEIYDQTHP 319
             +     + E+Y   HP
Sbjct: 319 TVER----LREVYATAHP 332


>gi|317504008|ref|ZP_07962015.1| tyrosine recombinase XerD [Prevotella salivae DSM 15606]
 gi|315664868|gb|EFV04528.1| tyrosine recombinase XerD [Prevotella salivae DSM 15606]
          Length = 293

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 136/287 (47%), Gaps = 21/287 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L+ ER  S LT+++Y  D R F  F               +LS+  + + + +   
Sbjct: 6   FLNYLKFERNRSDLTIKNYGEDLRAFEEFYG---------NLDSRLSWKSVDSDVIRDWM 56

Query: 81  QKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           + + D+     S+ R LS ++SF ++   RK+  ++ +  +   KK   LP+ L E +  
Sbjct: 57  ESMMDKGNNATSINRRLSALRSFYRFALTRKLVDKNPVHGVTGPKKGRPLPQFLKENEMD 116

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+D      S E    D R+  ++   Y  G+R+SE + L    +      L++ GK +
Sbjct: 117 RLLDAESWTESFE----DVRDRTVIMTFYETGIRLSELIGLDDSMVDFSNRQLKVTGKRN 172

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYL 254
           K R++P    +   + +Y      ++N   +  LF   +G+ +     +  + R L +  
Sbjct: 173 KQRVIPFGEELLVTLRDYMKCRDKEVNRQSE-ALFVSTKGQRMTSSQVREGVKRNLSKVC 231

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            L    T H LRH+FAT +L+N   + S++ +LGH  LSTT+IYT+ 
Sbjct: 232 TLK-KRTPHVLRHTFATAMLNNKAGIESVKKLLGHESLSTTEIYTHT 277


>gi|160934248|ref|ZP_02081635.1| hypothetical protein CLOLEP_03119 [Clostridium leptum DSM 753]
 gi|156866921|gb|EDO60293.1| hypothetical protein CLOLEP_03119 [Clostridium leptum DSM 753]
          Length = 309

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 142/307 (46%), Gaps = 27/307 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q++L+N   ++ +S  TLQSY  D   F I+LA        I     ++  +++ +I   
Sbjct: 19  QDYLKN---QKCVSSNTLQSYVRDIEHFSIYLAAEN-----IDNPASVTADDLQHYIESL 70

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   ++ R+++ I+ F +YL    I +E+    ++  K     P  L  ++   L+
Sbjct: 71  EKLGRSASTVTRNIASIRCFYQYLILINIASENPAKEIKREKTEKKPPSILTGEEIRLLL 130

Query: 139 D--NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGD 195
           D  NV+     + K    R+ A++ LLY  G+R+SE + L  Q+I      L  +  K D
Sbjct: 131 DQPNVM-----DPKG--CRDKAMIELLYATGIRVSELIDLNLQDINLKTGMLHCRRPKSD 183

Query: 196 KIRIVPLLPSVRKAILEYYDLCP---FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
             RI+P+      ++ +Y         D        LF  + G  L    F + I+    
Sbjct: 184 --RIIPIYAEAVASLSDYISRVRRIIIDPVGKDGQALFVNLNGHRLTRQGFWKIIKGYAA 241

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +    T HTLRHSFA HLL NG DL+ IQ +LGH  +++TQ+Y N+ +    +    
Sbjct: 242 QARITKDITPHTLRHSFALHLLQNGADLKDIQEMLGHADIASTQVYANLLN----NRFQN 297

Query: 313 IYDQTHP 319
           +Y+  HP
Sbjct: 298 VYNHCHP 304


>gi|319406365|emb|CBI80006.1| integrase/recombinase XerD [Bartonella sp. AR 15-3]
          Length = 312

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 149/318 (46%), Gaps = 34/318 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY--TEIRAFISKR 78
           +L+ +  ERG S  TL +Y+ D +        + + K++ ++I   S    ++   +S  
Sbjct: 10  FLEMMSAERGASVRTLLAYQHDLQ--------WAQNKLSSRSISFFSAQREDLINLLSLM 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +       S  R LS ++ F ++L    +  +    ++ + ++   LP+ ++E     L+
Sbjct: 62  QIAGCAATSQARRLSTLRQFFQFLYAEGLREDDPSNDIDSPRQGRPLPKIISEDAVTKLL 121

Query: 139 DNVLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           D   L T       +  +   R    L +LY  GLRISE +SL  Q +   ++ + ++GK
Sbjct: 122 DFAQLETDQAEYGSQNYYRALRLWVFLEMLYATGLRISELVSLPVQAVRRKEAFILVRGK 181

Query: 194 GDKIRIVPLLPSVRKAILEYY-------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           G K R+V +    R+ + ++        D   F L      P  R   G      V  R 
Sbjct: 182 GGKERVVLVSEKARQVLSQWLILRDQGKDATSFYL-----FPA-RSSTGYIARQFV-ARG 234

Query: 247 IRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           ++ L +  G+     + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V    
Sbjct: 235 LKDLAKRAGIQSENFSPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQIYTHVLEAR 294

Query: 306 GGDWMMEIYDQTHPSITQ 323
               +  + ++ HP I Q
Sbjct: 295 ----LHRLVNEHHPLIDQ 308


>gi|311113293|ref|YP_003984515.1| tyrosine recombinase XerD [Rothia dentocariosa ATCC 17931]
 gi|310944787|gb|ADP41081.1| tyrosine recombinase XerD [Rothia dentocariosa ATCC 17931]
          Length = 391

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 116/252 (46%), Gaps = 24/252 (9%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +G  S+ R+++ ++    +    +I        ++  K    LP+A++ +Q   L+    
Sbjct: 143 LGPNSIARTMAAVRGAHSFWHASRILETDPAAAVKPPKNVKRLPKAVSVEQMQKLLAIPS 202

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM------DDQST-------LR 189
           L T         RN AIL  LY  G R+SE L+    +I       D+          +R
Sbjct: 203 LKTP-----TGLRNRAILEFLYATGARVSEMLATDLDDIHLGEKPRDENGESIAVPGYVR 257

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           + GKG K R+VPL    ++A+ +Y       F  +      LF   RG  L        +
Sbjct: 258 LFGKGGKERLVPLGSYAQRALEDYIVRARPKFASHGKGTAALFLNGRGSRLGRQGAWLIL 317

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++     GL    + H++RHSFATHL+  G D+R +Q +LGH  ++TTQ+YT V  +   
Sbjct: 318 KETAEEAGLSSDFSPHSIRHSFATHLVQGGADIRVVQELLGHASIATTQVYTKVTPEG-- 375

Query: 308 DWMMEIYDQTHP 319
             M+E+Y   HP
Sbjct: 376 --MLEVYRMAHP 385


>gi|168185133|ref|ZP_02619797.1| tyrosine recombinase [Clostridium botulinum Bf]
 gi|182671818|gb|EDT83779.1| tyrosine recombinase [Clostridium botulinum Bf]
          Length = 327

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/224 (36%), Positives = 114/224 (50%), Gaps = 24/224 (10%)

Query: 90  RSLSGIKSFLKYLK-KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           R ++ +KSF  YLK K KI   +   N+   K+    P  L+ K++  L+D V +     
Sbjct: 97  RKVAVLKSFFNYLKNKVKIIELNPTKNLETPKRPKRQPVYLSLKESEMLLDAVKIKNGRN 156

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
            +    R+ AI+ L   CGLR+SE  ++    I +D  TL I GKGDK R + L  S  K
Sbjct: 157 KE----RDYAIITLFLNCGLRLSELCNIKLSYIRND--TLIITGKGDKQRTIYLNNSCLK 210

Query: 209 AILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           AI EY       LN+  +L          LF   R + +N    QR +++   Y GL   
Sbjct: 211 AINEY-------LNVRNKLKNIKDKDSDYLFLSERKQKINKRSVQRIVQKFIEYAGLDKK 263

Query: 260 TTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVN 302
            T H LRH+ AT L   G  D+R++Q ILGH  +STT IYT+V+
Sbjct: 264 YTVHKLRHTAATLLYKYGEVDIRNLQVILGHENISTTTIYTHVD 307


>gi|308388941|gb|ADO31261.1| putative integrase/recombinase [Neisseria meningitidis alpha710]
          Length = 291

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 117/233 (50%), Gaps = 11/233 (4%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R+LS  K    ++++  I T++    ++  K   ++P  + E+Q   L+      T 
Sbjct: 66  SQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTDTP 125

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
           H       R+ A+L L+Y  GLR+SEA+ L   N+  D+  +   GKGDK R+VP+    
Sbjct: 126 H-----GLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQES 180

Query: 207 RKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              +  YY +  P  L       LF   +   ++  +    +++     G+    + H+L
Sbjct: 181 AYWVGRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIG-HISPHSL 239

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           RH+FATHL+ +G DLR +Q +LGH  L+TTQIYT+V +     W+  +  + H
Sbjct: 240 RHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANV----WLQGVVKEHH 288


>gi|160883082|ref|ZP_02064085.1| hypothetical protein BACOVA_01050 [Bacteroides ovatus ATCC 8483]
 gi|156111554|gb|EDO13299.1| hypothetical protein BACOVA_01050 [Bacteroides ovatus ATCC 8483]
          Length = 293

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 145/301 (48%), Gaps = 13/301 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L  L+ ER  S+ T+ +Y  D +Q    L  + +E+       ++    IR +I   
Sbjct: 4   ESFLDYLQYERNYSEKTVLAYGEDIKQ----LQEFAQEEYGKFNPLEVEAELIREWIVSL 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S+ R LS +++F KYL ++  TT   +  ++  K    LP  L E +   L+
Sbjct: 60  MDKGYTSTSVNRKLSSLRTFYKYLLRQGETTIDPLRKIKGPKNKKPLPVFLKENEMNRLL 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D     T     +   R+  I+ + Y  G+R+SE + L  +++    S L++ GK +K R
Sbjct: 120 D----ETDFGEGFKGCRDRLIIEVFYATGMRLSELIGLDNKDVDFSASLLKVTGKRNKQR 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++P    +++ +LEY ++    +    +    R    +     V+    R L +   L  
Sbjct: 176 LIPFGDELQELMLEYINVRNETIPERSEAFFIRENGERLYKNLVYNLVKRNLSKVATLK- 234

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FAT +L+N  +L  ++ +LGH  ++TT+IYT+   +     + ++Y Q H
Sbjct: 235 KKSPHVLRHTFATTMLNNEAELGVVKELLGHESITTTEIYTHATFEE----LKKVYKQAH 290

Query: 319 P 319
           P
Sbjct: 291 P 291


>gi|254451038|ref|ZP_05064475.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198265444|gb|EDY89714.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 317

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/149 (39%), Positives = 82/149 (55%), Gaps = 4/149 (2%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC 217
           +L L YGCG+R  E + L   +I   Q  +RI Q KG K R V L   +   + E++   
Sbjct: 146 MLSLAYGCGMRAGEVVRLKVGDIDSAQKIIRIVQAKGRKDRNVMLPSDILGMLREWWKER 205

Query: 218 PFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           P   + ++  P   LF G RGK L+     R  ++  R  G+    T HTLRHSFATHLL
Sbjct: 206 PTGQDKDLPTPERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTLRHSFATHLL 265

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             G D+R IQ++LGH +L+TT  Y +V +
Sbjct: 266 ERGVDIRVIQALLGHSKLTTTARYASVAT 294


>gi|332977095|gb|EGK13899.1| integrase-recombinase [Desmospora sp. 8437]
          Length = 330

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 147/318 (46%), Gaps = 58/318 (18%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--------------------------RQ 65
           S+ T+ +Y  D   F +F  F  E+++ ++++                          R 
Sbjct: 7   SRQTIANYAYD---FALFFDFLKEKEVDLESVTPRMLRRFFRHIENGYERTVWVSVKKRD 63

Query: 66  LSYTEIRAFISKRRTQKIGDRSLK-RSLSGIKSFLKYLKKRKI-------TTESNILNMR 117
            S  E+   +  R+  +   R+ K R  S ++S  +YL K  +         E   L  R
Sbjct: 64  PSTGEVTESLVPRKHFRENTRAGKERKRSSLRSLFRYLVKNDVLDKDPMQEYEDATLKAR 123

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETK----WIDARNSAILYLLYGCGLRISEA 173
           N K+   +P  L   +AL L++ +  +   + +    W +AR+ A++ +L   G+R+SE 
Sbjct: 124 NRKR---VPVFLTRDEALRLIEAIGSYHQKQKRRRFAWYEARDRAMILILLNTGMRVSEL 180

Query: 174 LSLTPQNIMDDQSTLRI--QGKGDKIRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLF 230
           + L   NI  D  + R+   GKG K R++ L P+    +  Y +L P + +    Q  LF
Sbjct: 181 VGLNLNNIQSDGVSARVIVLGKGGKERMLKLNPAAYTGLRRYMELRPEEGVPPEHQQALF 240

Query: 231 -RGIRGKPLNPGV---FQRYIRQLRRYLGLP---LSTTAHTLRHSFATHLLSNGGDLRSI 283
               R +    GV    Q+Y+R+      LP    + + H LRH+ AT LLSNG +LR +
Sbjct: 241 LNKNRTRMSRKGVSEALQKYVREA----NLPPKAANISPHKLRHTLATLLLSNGENLRVV 296

Query: 284 QSILGHFRLSTTQIYTNV 301
           Q ILGH  + TTQIYT+V
Sbjct: 297 QEILGHSSIQTTQIYTHV 314


>gi|312139234|ref|YP_004006570.1| tyrosine recombinase xerc [Rhodococcus equi 103S]
 gi|311888573|emb|CBH47885.1| tyrosine recombinase XerC [Rhodococcus equi 103S]
          Length = 313

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 136/308 (44%), Gaps = 24/308 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++ + L +ERG S+ T+++Y  D    L FL     + +    +  L    +RA+++ + 
Sbjct: 20  DYDEYLRLERGRSEHTVRAYRADVAGLLGFLCRDRPDAV----LADLDLRVLRAWLAAQA 75

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  +L R  S  K F  + ++         + +   K   +LP  L ++QA   + 
Sbjct: 76  AAGTARTTLARRTSSAKGFTAWAERTGRMPVDPGIRLVAPKAHRTLPPVLRQEQAAEAMV 135

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                 + E   +  R+  I+ LLY  G+R+ E   L   +I  D+  LR+ GKGDK R+
Sbjct: 136 AAESGAAQEDP-VAVRDRLIVELLYSTGIRVGELCGLDLGDIDHDRRVLRVLGKGDKERV 194

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL----- 254
           VP       AI  +        +   +L   R      L     +   RQ R  +     
Sbjct: 195 VPFGRPAEDAIGAWL------RSGRPELVNERSGDALLLGRRGGRLDQRQARAVVHDVVQ 248

Query: 255 ---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G P     H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V+       + 
Sbjct: 249 AVPGAP-DLAPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVSVAR----LR 303

Query: 312 EIYDQTHP 319
            ++DQ HP
Sbjct: 304 AVHDQAHP 311


>gi|281422267|ref|ZP_06253266.1| integrase/recombinase XerD [Prevotella copri DSM 18205]
 gi|281403772|gb|EFB34452.1| integrase/recombinase XerD [Prevotella copri DSM 18205]
          Length = 294

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 119/234 (50%), Gaps = 11/234 (4%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S+ R LS +K F ++   R         +++  K+S  LP+ L E +   L+D  +    
Sbjct: 69  SVNRRLSALKMFYRFALVRHYVESDPAHSLKGPKESKPLPQFLKENEMDELLDRKMWGDD 128

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
           ++    + R   I+ L Y  G+R+SE + L   ++   +  ++I GKG+K RIVP    +
Sbjct: 129 YD----NVRARTIIILFYETGMRLSELIGLDVDDVNFIKKEIKITGKGNKQRIVPFGDEL 184

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ-LRRYLGLPLSTTAHTL 265
           + A+ EY  L    + +     L    +G  ++P   +  +++ L R   L    + H L
Sbjct: 185 KNALSEYLTLRAQRVMVK-SGALLLADKGGRMSPVQVREIVKENLARVCSLK-KKSPHVL 242

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           RH+FAT +L++G  + S++ +LGH +LSTT+IYT+   +     +  +Y + HP
Sbjct: 243 RHTFATAMLNHGAGIESLKRLLGHAKLSTTEIYTHTTFEQ----LKRVYIEAHP 292


>gi|169823615|ref|YP_001691118.1| putative integrase [Finegoldia magna ATCC 29328]
 gi|167832235|dbj|BAG09150.1| putative integrase [Finegoldia magna ATCC 29328]
          Length = 359

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 157/314 (50%), Gaps = 35/314 (11%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFL--IFLAFYTEEKITIQT--------------I 63
           N++++L +   LSK T+  Y      F   +FL FY +    I T               
Sbjct: 32  NYVKDLYVMYNLSKHTIIDYFSLITIFTKKMFLTFYEKPYYDIITGKYDEHYLSIDEKFY 91

Query: 64  RQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
            Q+    +  F+++ + ++ + + S+   +  +KSF  YL++     ++N+ N+R  K  
Sbjct: 92  EQVEKRHVNDFLAELKLERNLKESSVITKIRQLKSFYSYLEEH-YDIKNNVKNIRIPKAE 150

Query: 123 NSLPRALNEKQALTLVD----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            +LP  L  ++A++LV+    ++  H   +TKWI  RN  ++ +L  C LR SE  S+  
Sbjct: 151 KNLPVYLTLEEAVSLVNVVDKDIEQHKGTKTKWICVRNKCMIVMLLNCALRRSELRSINI 210

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL------FRG 232
           ++I +D   + + GKG K R + L    +++I +Y  + P D   N  L +      +  
Sbjct: 211 EDIKEDY--IIVMGKGAKERTIYLNDLTKQSINDYLRVRPKDAKDNKALFITKNKHTYSR 268

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFR 291
           I  + +   V ++Y+R+    L   L +T H LRH+ AT +  +G  DLRS+Q ILGH  
Sbjct: 269 ISCERIG-DVVKKYLREAN--LNDQLFST-HKLRHTSATLMYQHGNVDLRSLQQILGHAS 324

Query: 292 LSTTQIYTNVNSKN 305
             TT+IYT+V  KN
Sbjct: 325 SKTTEIYTHVYDKN 338


>gi|261364728|ref|ZP_05977611.1| tyrosine recombinase XerD [Neisseria mucosa ATCC 25996]
 gi|288567026|gb|EFC88586.1| tyrosine recombinase XerD [Neisseria mucosa ATCC 25996]
          Length = 291

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 137/286 (47%), Gaps = 26/286 (9%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFL--AFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           L++L ++  LS  TLQ Y  D  +    L    YT     +  +    Y    A   K  
Sbjct: 10  LESLWLQDRLSHNTLQGYRRDLEKIAARLEEGGYTWLNAEVADLADAVY----AADEKHS 65

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           +Q        R+LS  K    +L++ +  T++    ++  K++  LP  + E Q   L+ 
Sbjct: 66  SQA-------RALSACKRLYAWLEETERRTDNPTRFLKAPKQTQKLPTLITEAQIEKLLA 118

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                T H       R+ A+L ++Y  GLR++EA+ L   ++  ++  +R  GKGDK+RI
Sbjct: 119 APDTETPH-----GLRDKALLEVMYATGLRVTEAVKLQLGDLDLNRGCIRTIGKGDKLRI 173

Query: 200 VPLLPSVRKAILEYYDLC----PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           VP+       +  Y   C    P  L   I   +F   +   ++  +    ++      G
Sbjct: 174 VPMGEEAVYWVERY---CAESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKNYAETAG 230

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  S + H LRH+FATHL+++G DLR++Q +LGH  ++TTQIYT+V
Sbjct: 231 IT-SLSPHGLRHAFATHLVNHGVDLRAVQLMLGHANINTTQIYTHV 275


>gi|237711657|ref|ZP_04542138.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|237725901|ref|ZP_04556382.1| tyrosine type site-specific recombinase [Bacteroides sp. D4]
 gi|265753077|ref|ZP_06088646.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
 gi|229435709|gb|EEO45786.1| tyrosine type site-specific recombinase [Bacteroides dorei
           5_1_36/D4]
 gi|229454352|gb|EEO60073.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|263236263|gb|EEZ21758.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
          Length = 293

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 150/307 (48%), Gaps = 25/307 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L  L  ER  S+ T+ SY  D  +F  ++    +E +   T+       +R ++   
Sbjct: 4   DSFLDYLRFERNYSEKTIVSYGIDLIKFEEYIR-GKDENVDFTTV---DADLVRGWVMNL 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S+ R LS ++SF ++L K+ +  E  +L +   K    LP  L E++   L+
Sbjct: 60  IEDGYTSASVNRKLSSLRSFYRFLLKKGVIGEDPMLKIIGPKNKKPLPVFLKEREMDRLL 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D+V      +  +   R+  +L + Y  G+R+SE + L   ++    S +++ GK +K R
Sbjct: 120 DDV----PFKEDFTGCRDRMVLEMFYATGMRLSELIGLNDVDVDFSASLIKVTGKRNKQR 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPG-VFQRYIRQLRR 252
           ++P    +R+A+  Y  +       N  LP      F    GK + PG V+    R L +
Sbjct: 176 LIPFGEELRRAMFVYLKIR------NEVLPGKAGAFFVLKNGKRMYPGKVYLLVKRNLSK 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            + L    + H LRH+FAT +L+N  +L +++ +LGH  L+TT+IYT+   +     + +
Sbjct: 230 VVSLK-KRSPHVLRHTFATAMLNNEAELGAVKELLGHSSLTTTEIYTHTTFEE----LKK 284

Query: 313 IYDQTHP 319
           +Y+Q HP
Sbjct: 285 VYEQAHP 291


>gi|222529770|ref|YP_002573652.1| tyrosine recombinase XerD [Caldicellulosiruptor bescii DSM 6725]
 gi|312622005|ref|YP_004023618.1| tyrosine recombinase xerd [Caldicellulosiruptor kronotskyensis
           2002]
 gi|222456617|gb|ACM60879.1| tyrosine recombinase XerD [Caldicellulosiruptor bescii DSM 6725]
 gi|312202472|gb|ADQ45799.1| tyrosine recombinase XerD [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 291

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 143/301 (47%), Gaps = 21/301 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N+LQ    +   S+ T+ SY  D ++++ FL    + KI ++   Q   T + A+I   +
Sbjct: 9   NYLQR---QNRFSQNTISSYLRDAKKYIEFL---DDIKIKLENTSQ---TTLIAYIISMQ 59

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                + ++ R++  +K F ++LK + I     I  +   K   S P+ L   +      
Sbjct: 60  KGGKSNSTIARAIVSLKVFYEFLKIQDIVDIGKI-EIEPPKLEKSPPQILTRDEV----- 113

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             LL    E      R+ A+L LLY  G+R+SE ++L   +I  +   +  + K  + R+
Sbjct: 114 ERLLSCPKEDDIKGIRDKAMLELLYATGIRVSELINLNLDDINLEHGYIICKNK-KRDRV 172

Query: 200 VPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +P+      A+ +Y     P+      +  LF    G+ +    F + ++   +   +  
Sbjct: 173 IPIGSYAISAVEKYLRHSRPYLAKSKDEEALFLNFSGERMTRQGFWKIVKFYAQNAKIDK 232

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             T H LRHSFATHL+ NG D+R++Q +LGH  +STTQ Y  V +      + E+Y +TH
Sbjct: 233 EITPHVLRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVK----LKEVYQKTH 288

Query: 319 P 319
           P
Sbjct: 289 P 289


>gi|256840427|ref|ZP_05545935.1| tyrosine recombinase XerC [Parabacteroides sp. D13]
 gi|256737699|gb|EEU51025.1| tyrosine recombinase XerC [Parabacteroides sp. D13]
          Length = 374

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 127/268 (47%), Gaps = 42/268 (15%)

Query: 61  QTIRQLSYTE--IRAFIS--KRRTQKIGDRSLK-----------------RSLSGIKSFL 99
           +T+RQL Y+E  +RA+ +  K   Q    R+L+                 R +S  +  L
Sbjct: 98  ETLRQLRYSEHTVRAYTAYFKEFQQYFAGRNLRYIRPEEINAYIVHLIDTRGISSCQQNL 157

Query: 100 -----KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
                K+  ++ +  E     ++  K+  +LP  L++++  +++D             D 
Sbjct: 158 RINSIKFYFEKVLGQERKCYEVKRAKRERTLPDVLSKEEIKSILDAT---------GPDI 208

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213
           R   +  LLY  GLRISE L L P +I   +S +R+ QGKG K R   L   + + + EY
Sbjct: 209 RLFCMFSLLYSAGLRISELLDLKPHDINVSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEY 268

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
             L         Q  LF   +G+P    +  + +++  +  G+      H LRHSFATHL
Sbjct: 269 TKL------YKPQEWLFERYKGEPFTESIVSKKLKEAAKEAGITKRVYPHLLRHSFATHL 322

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  G DL+ ++ +LGH +L TT++Y ++
Sbjct: 323 IEQGTDLKIVKELLGHNQLKTTEMYVHI 350


>gi|182417327|ref|ZP_02948665.1| tyrosine recombinase XerD [Clostridium butyricum 5521]
 gi|237668789|ref|ZP_04528773.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182378835|gb|EDT76354.1| tyrosine recombinase XerD [Clostridium butyricum 5521]
 gi|237657137|gb|EEP54693.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 292

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 145/298 (48%), Gaps = 25/298 (8%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +E G S+ T+ +Y  D     ++L F   +K+ I     L+   + ++I     Q   +R
Sbjct: 13  LESGKSENTIYAYVTDVT---LYLKFLNRKKVDIYKSDNLT---VASYIQNLLNQGKSER 66

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S+ R +  +++F  YLK + +  E   +  ++ K +  LP+ L  ++    VD ++    
Sbjct: 67  SINRIVISLRNFYSYLKSQSLIQEVPKIEYKSSKNNRKLPQILTIEE----VDKIIRIVE 122

Query: 147 HET-KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
            +  K I  R++A+L L+Y  G+++SE ++L  +++  + + +R        RI+P+  S
Sbjct: 123 KDCPKGI--RDNALLELMYATGMKVSELINLNVEDVNLELNFVRCTDNKHYERIIPIGRS 180

Query: 206 VRKAILEY----YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
             KA+ EY    Y +    ++      LF  + G  L      R +++  R  G+     
Sbjct: 181 ACKALSEYLSIRYKIAQCGVS-----NLFVNLNGNKLTRQGIWRIVKEYSRKAGIDKDVN 235

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            +T RHSFA HLL NG ++R++Q +LG+  L+    Y  + +    D +  IY  THP
Sbjct: 236 LNTFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTYYEIIN---NDKINYIYMHTHP 290


>gi|266621718|ref|ZP_06114653.1| integrase/recombinase XerD [Clostridium hathewayi DSM 13479]
 gi|288866619|gb|EFC98917.1| integrase/recombinase XerD [Clostridium hathewayi DSM 13479]
          Length = 295

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 150/311 (48%), Gaps = 23/311 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++ E   +++ L   +  SK T  SY  D    L+ +A Y EE+  I  + +++ T + +
Sbjct: 1   MVTEINEFVKYLREVKKTSKNTEVSYHRD----LLQMASYLEEQ-GITDVEKVTKTSLNS 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           ++     +     ++ R+L+ +K+F  Y   + +I  +   L ++  K     P  L  +
Sbjct: 56  YVLHLEKEGRATTTISRTLASMKAFFHYEYGEGRIRRDPAEL-IKAPKIEKKAPTILTVE 114

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ--NIMDDQSTLRI 190
           +  +L++     +  E      R+ A+L LLY  G+R+SE + L  +  N+     T R 
Sbjct: 115 EVNSLLEQPTGDSPKEL-----RDKAMLELLYATGIRVSELIHLKVEDMNLAVGFITCRD 169

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIR 248
           +    K R++P     R+A++ Y +     L L  Q    LF    G+P++   F + I+
Sbjct: 170 E---HKERMIPFGKVARQAMVNYMESGRASL-LKGQESEWLFTNCSGRPMSRQGFWKIIK 225

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                 G+    T HTLRHSFA HLL NG D+ ++Q+++GH  ++TTQ+Y N      G+
Sbjct: 226 YYGEKAGIQADITPHTLRHSFAAHLLGNGADIHAVQAMMGHSDMATTQMYMNYTR---GE 282

Query: 309 WMMEIYDQTHP 319
            +   Y   HP
Sbjct: 283 AVRSAYAGAHP 293


>gi|154245579|ref|YP_001416537.1| integrase family protein [Xanthobacter autotrophicus Py2]
 gi|154159664|gb|ABS66880.1| integrase family protein [Xanthobacter autotrophicus Py2]
          Length = 354

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 133/311 (42%), Gaps = 39/311 (12%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L    IERG    TL +Y  D      FLA  +        + +   + IRA+++    
Sbjct: 35  FLDMQAIERGGGPNTLDAYRRDLTDLAEFLAPVS--------LAEADTSAIRAYLADLSA 86

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     ++ R LS ++ F ++L       +     +   K+   LP+ L+  +   L+D 
Sbjct: 87  RGFAATTVARRLSALRQFYRFLFAEGHRADDPAAVLEGPKRGRPLPKVLSVAEVTRLIDT 146

Query: 141 VLLHTSHETKWIDA----------------------------RNSAILYLLYGCGLRISE 172
                +   + ++A                            R + ++ LLY  GLR+SE
Sbjct: 147 AHARAAQAEESLNAGQGGEGQGEETPGAGAAKAGRAELLRLRRVACMVELLYASGLRVSE 206

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF-R 231
            ++L           + + GKG K R+VPL     K  ++ +        L     LF  
Sbjct: 207 LVALPAAAARAQGEAILVTGKGRKERLVPL-SGPAKVAMQAFLAARRAAGLEASRWLFPS 265

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
           G     +      R +++L    GL P   + H LRH+FA+HLL++G DLR +Q++LGH 
Sbjct: 266 GSESGHVTRQQAARDLKELALAAGLDPAKLSPHVLRHAFASHLLAHGADLRVVQTLLGHA 325

Query: 291 RLSTTQIYTNV 301
            +STTQIYT+V
Sbjct: 326 DVSTTQIYTHV 336


>gi|85373824|ref|YP_457886.1| integrase [Erythrobacter litoralis HTCC2594]
 gi|123099544|sp|Q2NB52|XERC_ERYLH RecName: Full=Tyrosine recombinase xerC
 gi|84786907|gb|ABC63089.1| integrase [Erythrobacter litoralis HTCC2594]
          Length = 306

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 139/304 (45%), Gaps = 28/304 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT--IQTIRQLSYTEIRAFIS 76
           + +L  L  ERG +  TL +Y  D             E +   + T R+ + + + +  S
Sbjct: 9   EEFLAMLAAERGAAANTLAAYRRD---------LEGAEALAGDLATARRPALSRLGSAWS 59

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                 +   ++ R  S ++ F  +L    +  +     +        LP+ L+ K+   
Sbjct: 60  D-----LAPATVARKASALRQFYGFLVDEGLREDDPSSALPRPTMRRPLPKTLSHKEVER 114

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L +      +  ++ +  R  A++ LLYG GLR +E +SL    +  D   L + GKG  
Sbjct: 115 LFEQAE-REAETSRPLPVRLLALIELLYGSGLRATELVSLPVAAVPRDAPFLTVTGKGGV 173

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+VP+    R+A+  +  L   D        LF   +       +FQ  +++L     L
Sbjct: 174 ARMVPVSGRAREALQSWMGLRGSDSPY-----LFPSRKAHITRVRLFQ-MLKELAVRADL 227

Query: 257 -PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            P   + H LRH+FATHLL  G DLR +Q++LGH  +STTQIYT+V++      ++ + +
Sbjct: 228 NPDKVSPHVLRHAFATHLLEGGADLRVLQTLLGHADISTTQIYTHVDAAR----LVALVN 283

Query: 316 QTHP 319
           + HP
Sbjct: 284 ERHP 287


>gi|322691408|ref|YP_004220978.1| tyrosine recombinase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320456264|dbj|BAJ66886.1| tyrosine recombinase [Bifidobacterium longum subsp. longum JCM
           1217]
          Length = 357

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 9/156 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           RN+AIL LLY  G+R++E +S+   +I     T+++ GKG+K R+VP     ++A+  + 
Sbjct: 188 RNAAILELLYATGIRVAELVSMNIADIDFSTRTIKVTGKGNKQRVVPFGLPAQRALETWL 247

Query: 215 D--------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           +             +       LF G RG  ++  + +  + +  R  G+P   + H LR
Sbjct: 248 EQGRPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVP-DISPHALR 306

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           HS ATH+L  G DLR +Q +LGH  L TTQ YT+V+
Sbjct: 307 HSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVS 342


>gi|237667473|ref|ZP_04527457.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|237655821|gb|EEP53377.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 328

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 152/330 (46%), Gaps = 37/330 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE----- 55
           ++ ++LPE VS        ++L  LE  R  S  T+ +Y+ D   F  FL  Y       
Sbjct: 8   LKNDDLPESVS--------DFLNYLETIRSKSPNTIDAYKIDLTLFFRFLCVYRGLVKND 59

Query: 56  ---EKITIQTIRQLSYTEIR--------AFISKRRTQKIGDRSLKRSLSGIKSFLKYL-K 103
              E I I  I       I+        +F+ K R      R+  R ++ +KSF KYL  
Sbjct: 60  IEFEDINISNIDNEFLKSIKLRDLYAFLSFVEKYRNNSSYARA--RKVATLKSFFKYLFG 117

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           K KI +++  + + + K +   P  L   Q++ L++++      +  +  AR+  IL   
Sbjct: 118 KAKIISDNPAMELESPKINKRHPVYLTLNQSIALLESL---DKDDKNY--ARDYCILTFF 172

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLN 222
             CG+R+SE   +  + I  D   L I GKGDK R V L  +  +A+  Y  +      +
Sbjct: 173 LNCGMRLSELCGIQIEKIRGD--ILSIVGKGDKERTVYLNEACLRALNNYLSVRDDSKAS 230

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DL 280
              +  LF   R  P+N    +  I++     G      T H LRH+ AT +   G  D+
Sbjct: 231 YENKKYLFLSARNAPINKRTVEIMIKKHITNAGFTGEKYTPHKLRHTAATLMYKYGNVDI 290

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           RS+QSILGH  +STTQIYT+V+  +  D +
Sbjct: 291 RSLQSILGHENISTTQIYTHVDDDDLRDAV 320


>gi|212695321|ref|ZP_03303449.1| hypothetical protein BACDOR_04866 [Bacteroides dorei DSM 17855]
 gi|212662231|gb|EEB22805.1| hypothetical protein BACDOR_04866 [Bacteroides dorei DSM 17855]
          Length = 293

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 150/307 (48%), Gaps = 25/307 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L  L  ER  S+ T+ SY  D  +F  ++    +E +   T+       +R ++   
Sbjct: 4   DSFLDYLRFERNYSEKTIVSYGIDLIKFEEYIR-GKDENVDFTTV---DADLVRGWVMNL 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S+ R LS ++SF ++L K+ +  E  +L +   K    LP  L E++   L+
Sbjct: 60  IEDGYTSASVNRKLSSLRSFYRFLLKKGVIGEDPMLKIIGPKNKKPLPVFLKEREMDRLL 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D+V      +  +   R+  +L + Y  G+R+SE + L   ++    S +++ GK +K R
Sbjct: 120 DDV----PFKEDFTGCRDRMVLEMFYATGMRLSELIGLNDVDVDFSASLIKVTGKRNKQR 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPG-VFQRYIRQLRR 252
           ++P    +R+A+  Y  +       N  LP      F    GK + PG V+    R L +
Sbjct: 176 LIPFGEELRRAMFVYLKIR------NEVLPEKAGAFFVLKNGKRMYPGKVYLLVKRNLSK 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            + L    + H LRH+FAT +L+N  +L +++ +LGH  L+TT+IYT+   +     + +
Sbjct: 230 VVSLK-KRSPHVLRHTFATAMLNNEAELGAVKELLGHSSLTTTEIYTHTTFEE----LKK 284

Query: 313 IYDQTHP 319
           +Y+Q HP
Sbjct: 285 VYEQAHP 291


>gi|121634549|ref|YP_974794.1| putative integrase/recombinase [Neisseria meningitidis FAM18]
 gi|120866255|emb|CAM09996.1| putative integrase/recombinase [Neisseria meningitidis FAM18]
 gi|254671814|emb|CBA03927.1| site-specific recombinase [Neisseria meningitidis alpha275]
 gi|316983737|gb|EFV62718.1| tyrosine recombinase XerD [Neisseria meningitidis H44/76]
 gi|325197973|gb|ADY93429.1| tyrosine recombinase XerD [Neisseria meningitidis G2136]
 gi|325200561|gb|ADY96016.1| tyrosine recombinase XerD [Neisseria meningitidis H44/76]
          Length = 291

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 117/233 (50%), Gaps = 11/233 (4%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R+LS  K    ++++  I T++    ++  K   ++P  + E+Q   L+      T 
Sbjct: 66  SQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLAAPDTDTP 125

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
           H       R+ A+L L+Y  GLR+SEA+ L   N+  D+  +   GKGDK R+VP+    
Sbjct: 126 H-----GLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQES 180

Query: 207 RKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              +  YY +  P  L       LF   +   ++  +    +++     G+    + H+L
Sbjct: 181 AYWVGRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIG-HISPHSL 239

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           RH+FATHL+ +G DLR +Q +LGH  L+TTQIYT+V +     W+  +  + H
Sbjct: 240 RHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANV----WLQGVVKEHH 288


>gi|319409436|emb|CBI83085.1| integrase/recombinase XerD [Bartonella schoenbuchensis R1]
          Length = 312

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 137/296 (46%), Gaps = 30/296 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY--TEIRAFISKR 78
           +L+ +  ERG    TL +Y+ D +        +  +++  +++   S    ++   +S  
Sbjct: 10  FLEMMSAERGACAHTLSAYQNDLQ--------WAHDQLCSRSVSLFSAQREDLINLLSLM 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            T      S  R LS ++ F ++L    + T+    ++   ++   LP+ +NE     L+
Sbjct: 62  HTAGFAATSQARRLSTLRQFYQFLYAEGLRTDDPSHDIDTPRQRRLLPKTMNEDTVTKLL 121

Query: 139 DNVLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           D   L         +      R   ++ +LY  GLRISE +SL  Q +   +  + ++GK
Sbjct: 122 DRAQLEVDQTDYGSKNHMRALRLQVLIEMLYATGLRISELVSLPVQAVRGKEQFIVVRGK 181

Query: 194 GDKIRIVPLLPSVRKAILEYY-------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           G+K R+V L     + I ++        D   F L      P  R   G      V  R 
Sbjct: 182 GEKERMVLLSDKACQVISQWLVLRDQGKDAASFYL-----FPA-RSSTGYVARQFV-ARG 234

Query: 247 IRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +++L    G+  S  + H LRH+FA+HLL NG DLR +Q +LGH  +STTQIYT+V
Sbjct: 235 LKELAERAGVKSSNFSPHVLRHAFASHLLQNGADLRVVQHLLGHCDISTTQIYTHV 290


>gi|326204549|ref|ZP_08194406.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
 gi|325985342|gb|EGD46181.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
          Length = 297

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 148/303 (48%), Gaps = 41/303 (13%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  L+ E+  S  T+ +Y  D   F IF +F   + I   T+  ++   +R + +  
Sbjct: 8   EDFINFLKAEKDASAFTIANYTSD---FSIFSSFVESQGIK-PTVDAITTPLLRKYTTFL 63

Query: 79  RTQKIGD-RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +  K  +  +++R ++ ++SF  +L  ++   ++ +  +   KK + LP  L   +   L
Sbjct: 64  KIDKKYEVETIRRKINSLRSFFSFLISQEYIDKNPMAPITAPKKPDRLPIYLKPDEIKLL 123

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
           +   + H S + K    R+  I+  L   GLR SE LSL  QNI    +T+ +  GKG K
Sbjct: 124 ISMPMKH-SRDNKL---RDKCIIETLVFTGLRRSELLSLNWQNIDFGSNTITVLNGKGKK 179

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF--------RGIR--GKPLNPGVFQRY 246
            R+VP+   +   +  Y         L  +LPL          G R    PLN       
Sbjct: 180 QRVVPITEPLISDLWAY---------LQTRLPLHDNAVFISGNGTRLSTTPLN------- 223

Query: 247 IRQLRRYLGLPLST----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +  RRYL L   T    T H LRHS+ T LL NG DL SIQS++GH  L+TT+IYT+V+
Sbjct: 224 -QLFRRYLKLAGLTGKGYTIHKLRHSYGTLLLQNGADLISIQSLMGHNDLNTTKIYTHVD 282

Query: 303 SKN 305
            K+
Sbjct: 283 MKH 285


>gi|126178708|ref|YP_001046673.1| phage integrase family protein [Methanoculleus marisnigri JR1]
 gi|125861502|gb|ABN56691.1| tyrosine recombinase XerC subunit [Methanoculleus marisnigri JR1]
          Length = 304

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 123/251 (49%), Gaps = 28/251 (11%)

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           T+  +++S+++  K   ++L R +S + SF KYL  +       +L +   +  N   + 
Sbjct: 74  TDFFSYLSEQQDYK--PKTLHRMISTLSSFYKYLYVQGAVVADPMLGVERPRIKNQELKY 131

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L   Q L L++ +      E++    R+  I+ L+Y  G+R+SE  ++  ++I  ++ T+
Sbjct: 132 LKHSQVLRLINTI------ESE----RDRLIVRLIYATGVRVSELCAICVEDIDFEEQTI 181

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R++GKGDKIR V +     + I  +       +   I+ PLF G +G  L+P   Q   +
Sbjct: 182 RVKGKGDKIRTVFIDEETLEEINRF-------IGNTIEGPLFSGQQGNHLSPRTVQHLFK 234

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           Q       P   T H +RHS+A+ L     +LR +Q  LGH  + TT+IY + +     D
Sbjct: 235 QY-----APSGITPHKIRHSYASELYRRSKNLRVVQENLGHSSIKTTEIYLHTDI----D 285

Query: 309 WMMEIYDQTHP 319
               +Y Q  P
Sbjct: 286 ERKRVYQQYFP 296


>gi|146297327|ref|YP_001181098.1| tyrosine recombinase XerD [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145410903|gb|ABP67907.1| tyrosine recombinase XerD subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 291

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 141/309 (45%), Gaps = 28/309 (9%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           +E L ++Q + QN          T+ SY  D ++++ FL       I I+   Q +   I
Sbjct: 8   YEHLCQKQRFSQN----------TVMSYLRDIKKYIEFL---NNTGIKIEDTSQAT---I 51

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
             +I   +     + ++ R++  +K F ++LK   I     I  +   K   + P+ L +
Sbjct: 52  ITYIINMQKSGRSNSTIARAIVSLKVFYEFLKDHNIVDIGKI-EIDPPKLERTPPQILTK 110

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            +        LL    E      R+ A+L LLY  G+R+SE +SL   +I  +   +  +
Sbjct: 111 DEV-----EKLLSCPREDDIKGIRDKAMLELLYATGIRVSELISLNLSDINLEHGYIICR 165

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            K  + RI+P+     +A+ +Y +   P+      +  LF    G  +    F + ++  
Sbjct: 166 NK-KRDRIIPIGSYAIEAVEKYLNYSRPYLARKKEEEALFLNFNGARMTRQGFWKIVKFY 224

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+    T H LRHSFATHL+ NG D+R++Q +LGH  +STTQ Y  V        +
Sbjct: 225 TNVAGINKEITPHILRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQV----ANIKL 280

Query: 311 MEIYDQTHP 319
            E+Y + HP
Sbjct: 281 KEVYQKAHP 289


>gi|170740412|ref|YP_001769067.1| tyrosine recombinase XerD [Methylobacterium sp. 4-46]
 gi|168194686|gb|ACA16633.1| tyrosine recombinase XerD [Methylobacterium sp. 4-46]
          Length = 309

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 133/290 (45%), Gaps = 19/290 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L  L  ERG S  TL +Y  D   +L  LA    +  ++      +   +RA+++  
Sbjct: 13  QPYLDMLAAERGASANTLAAYRRDLDDYLAHLAAEGLDPASV------APAGVRAYVADL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   S  R LS I+ F ++L             +   K+  +LP+ L+  +  TL+
Sbjct: 67  AARGLKPSSAARRLSCIRGFHRFLYAEGHAPSDPTAPVSGPKRGRALPKVLSVAEVDTLL 126

Query: 139 DNVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
                  +      +A    R   +L LLY  GLR+SE +SL     +  +  L ++GKG
Sbjct: 127 AVAKEAVARAPNPGEAARAQRLLCLLELLYATGLRVSELVSLPRAAALTKERFLVVRGKG 186

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRG-IRGKPLNPGVFQRYIRQLRR 252
            + R+VPL        +    +     +L +  P LF        L    F R ++ +  
Sbjct: 187 GRERLVPLT------DIARAAMAAHLAHLAVPGPWLFPADSESGHLTRQAFARDLKAVAG 240

Query: 253 YLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             G+     + H LRH+FA+HLL NG DLR +Q +LGH  +STTQIYT++
Sbjct: 241 AAGIRADRISPHVLRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHI 290


>gi|238063317|ref|ZP_04608026.1| phage integrase [Micromonospora sp. ATCC 39149]
 gi|237885128|gb|EEP73956.1| phage integrase [Micromonospora sp. ATCC 39149]
          Length = 340

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 83/157 (52%), Gaps = 6/157 (3%)

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLN 222
           Y  G+R+SEA  L   ++   +  +R+ GKG + R VP     ++A+ ++     P    
Sbjct: 187 YATGVRVSEACGLDTADVDHSRRVVRVLGKGSRERSVPYGVPAQRALDDWLQAGRPVLTG 246

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
                 L  G RG  L+P + +R +       GLP  TT H LRHS ATHLL  G DLR+
Sbjct: 247 PGSGGALLLGARGGRLHPTMARRIVAGYAEAAGLP-RTTPHGLRHSAATHLLEGGADLRA 305

Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           +Q +LGH  L++TQIYT+V+ +     +   Y Q HP
Sbjct: 306 VQELLGHSSLASTQIYTHVSVER----LRAAYRQAHP 338


>gi|258543088|ref|YP_003188521.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-01]
 gi|256634166|dbj|BAI00142.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-01]
 gi|256637226|dbj|BAI03195.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-03]
 gi|256640278|dbj|BAI06240.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643335|dbj|BAI09290.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646390|dbj|BAI12338.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649443|dbj|BAI15384.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652429|dbj|BAI18363.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655487|dbj|BAI21414.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-12]
          Length = 291

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 132/288 (45%), Gaps = 38/288 (13%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + WL N       S  T+++Y  +  +F  F+A         + +  ++  +I+A+    
Sbjct: 28  KTWLHNR------SSNTVRAYRTNVAEFARFVA---------KPMADVALADIQAWNDS- 71

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-PRALNEKQALTL 137
                 D + +R +S +KS L Y  K     +      R  +  ++L  R L+ +Q L +
Sbjct: 72  -MADAADSTRRRKISAVKSLLTYGHKLGFLPQDAGAAFRMERGRDNLNERILSRQQVLAM 130

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGD 195
           +              D R  A+L LLYG GLRISEA +L  +++   QS     + GKG 
Sbjct: 131 LAGEK----------DPRRHALLALLYGTGLRISEACALRWRDMTRRQSGGIATVFGKGG 180

Query: 196 KIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K R V + PS+ K I     D+ P         P+  G  G  L+     R +++  +  
Sbjct: 181 KTRHVQVSPSLWKEIAAVRSDVGP-------DAPVIPGHDGGLLHERAVDRVVKRAAKRA 233

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           GLP   +AH LRH+FA+H L  G  +  +Q+ LGH  L+TT  Y++ +
Sbjct: 234 GLPPDVSAHWLRHAFASHQLDAGQPVHWVQAQLGHSSLATTTRYSHAS 281


>gi|294776711|ref|ZP_06742176.1| integron integrase [Bacteroides vulgatus PC510]
 gi|294449455|gb|EFG17990.1| integron integrase [Bacteroides vulgatus PC510]
          Length = 376

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 127/268 (47%), Gaps = 42/268 (15%)

Query: 61  QTIRQLSYTE--IRAFIS--KRRTQKIGDRSLK-----------------RSLSGIKSFL 99
           +T+RQL Y+E  +RA+ +  K   Q    R+L+                 R +S  +  L
Sbjct: 100 ETLRQLRYSEHTVRAYTTYFKEFQQYFAGRNLRYIRPEEINAYIVHLIDTRGISSCQQNL 159

Query: 100 -----KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
                K+  ++ +  E     ++  K+  +LP  L++++  +++D             D 
Sbjct: 160 RINSIKFYFEKVLGLERKCYEVKRAKRERTLPDVLSKEEIKSILDAT---------GPDI 210

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213
           R   +  LLY  GLRISE L L P +I   +S +R+ QGKG K R   L   + + + EY
Sbjct: 211 RLFCMFSLLYSAGLRISELLDLKPHDINVSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEY 270

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
             L         Q  LF   +G+P    +  + +++  +  G+      H LRHSFATHL
Sbjct: 271 AKL------YKPQEWLFERYKGEPFTESIVSKKLKEAAKEAGITKRVYPHLLRHSFATHL 324

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  G DL+ ++ +LGH +L TT++Y ++
Sbjct: 325 IEQGTDLKIVKELLGHNQLKTTEMYVHI 352


>gi|325525691|gb|EGD03450.1| site-specific tyrosine recombinase XerC [Burkholderia sp. TJI49]
          Length = 138

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 84/143 (58%), Gaps = 9/143 (6%)

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           ++ + ++GKG+K R VP+    RKAI  L  +     +   +   PLF  +RG  + PGV
Sbjct: 3   EAEVTVRGKGNKERKVPVG---RKAIEALNAWLAVRGEFVKHDPHPLFLSVRGNRMAPGV 59

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +  +++     G+P     H LRHSFATH+L + GDLR++Q +LGH  ++ TQ+YT+++
Sbjct: 60  VRERVKRAALAAGIPAHVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYTSLD 119

Query: 303 SKNGGDWMMEIYDQTHPSITQKD 325
            ++    + +IYD  HP   ++D
Sbjct: 120 FQH----LAKIYDSAHPRAKKRD 138


>gi|148379752|ref|YP_001254293.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 3502]
 gi|153934110|ref|YP_001384049.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A
           str. ATCC 19397]
 gi|153936224|ref|YP_001387591.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A
           str. Hall]
 gi|168180365|ref|ZP_02615029.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum NCTC 2916]
 gi|226949034|ref|YP_002804125.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
 gi|148289236|emb|CAL83332.1| tyrosine recombinase [Clostridium botulinum A str. ATCC 3502]
 gi|152930154|gb|ABS35654.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932138|gb|ABS37637.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. Hall]
 gi|182668709|gb|EDT80687.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum NCTC 2916]
 gi|226843631|gb|ACO86297.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
          Length = 326

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 155/311 (49%), Gaps = 45/311 (14%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY-------TE------EKITIQTIRQL 66
           ++L  L   +G S+ T++SY+ D   F  FL  Y       TE      + I+ + I+ +
Sbjct: 19  DFLNYLRTIKGKSENTIESYKLDLIMFFRFLKLYKGMVPGETEFNDIEIKDISDEDIKNI 78

Query: 67  SYTEIRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTESNILNMRNLKKSNS 124
           S T++ AF+S     +  G  +  R ++ +KSF ++L+ K KI  E+  L + + K S  
Sbjct: 79  SLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKIIKENPALELESPKISKR 138

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
            P        LTL ++  L +S + K+ + R+  I+ +   CGLR+SE   +   NI +D
Sbjct: 139 NP------VYLTLDESKRLLSSIDGKFKE-RDLCIVTMFLNCGLRLSELCGINISNIKND 191

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP------- 237
              L + GKG+K R V L  +  K + +Y         LN++  +   I  K        
Sbjct: 192 --ILTVVGKGNKERTVYLNKACIKTLNDY---------LNVRKEMGEKIVDKDALFLSKN 240

Query: 238 ---LNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DLRSIQSILGHFRL 292
              +N    +  +++  +  GL     + H LRH+ AT +  +GG D+RS+Q ILGH  +
Sbjct: 241 YTRINKRSVEMLVKKYVKKAGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHENI 300

Query: 293 STTQIYTNVNS 303
           STTQIYT+V+S
Sbjct: 301 STTQIYTHVDS 311


>gi|326388779|ref|ZP_08210366.1| integrase/recombinase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206737|gb|EGD57567.1| integrase/recombinase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 324

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 129/297 (43%), Gaps = 27/297 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI--- 75
           Q WL     +R  S  T++SY    R  L F+A      +    +  +S  E+RAF+   
Sbjct: 6   QEWLVE---QRSASVHTIRSYRDTWRLLLRFIAERKGGGVARVALADISADEVRAFLHHT 62

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK---ITTESNILNMRNLKKSNSLPRALNEK 132
              R   IG R+ +  L+ I+SF  ++  R    +   + +L +   ++  S P  L   
Sbjct: 63  EHGRGSTIGTRNCR--LAAIRSFFSFVADRNPEYVAQCAEVLTVPLKREPTSAPCYLEPA 120

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQ 191
           +    V+ +L      T     R+ A+L  LY  G RI EAL L P  I  D     R+ 
Sbjct: 121 E----VEAILAQPDRSTV-AGMRDHALLSFLYNSGARIQEALDLCPDAIRFDAPHCARLN 175

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GV---FQRYI 247
           GKG K RI PL P     I +  +  P   +  I    F    GKPL   GV      Y+
Sbjct: 176 GKGRKERICPLWPETVTLIEKLLERQPRAPDERI----FVNRYGKPLGASGVRFKLAAYV 231

Query: 248 RQLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +  + +    S   T H+ RH+ A HL++ G D+  I+S LGH  L TT  Y   N
Sbjct: 232 DEAAKAVPSLRSKHVTPHSFRHATAVHLVAAGVDITVIRSWLGHVSLDTTNHYAQAN 288


>gi|291527676|emb|CBK93262.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 306

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 143/300 (47%), Gaps = 21/300 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N+L+    ++ L + TL++Y  D RQF         E+I+I  I +++   +  +I  R 
Sbjct: 10  NYLEYCNSQKCLDEKTLKAYRIDLRQF--------SEQISIINITEITPKILEQYIV-RL 60

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN--MRNLKKSNSLPRALNEKQALTL 137
            ++   +++KR ++ +K+   YL+ + I  + N  N  + + +    LP+ +      T 
Sbjct: 61  HEQYKPKTVKRKIASVKALFHYLEYKDIL-DHNPFNKILIHFRDPVILPKTIPLHTVETF 119

Query: 138 VDNVL-----LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +  +        TS++ K    R++A+  LL+  G+RISE  SL   ++     T+ I G
Sbjct: 120 LSTIYKQRKNAKTSYQ-KRNALRDAAVAELLFATGMRISELCSLKINDVNLYDGTILIYG 178

Query: 193 KGDKIRIVPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KGDK R + +   +V   + EY D   FD         F    GK L+    +R I +  
Sbjct: 179 KGDKERRIQIGNEAVINILTEYND--AFDTERQACNNFFINQSGKALSDQSVRRMINKYT 236

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               +    T H  RH+FAT LL    D+R IQ +LGH  ++ T+IYT+V      D ++
Sbjct: 237 SLASIDQHITPHMFRHTFATSLLEADVDIRYIQEMLGHSSINITEIYTHVTVSKQRDILV 296


>gi|237708280|ref|ZP_04538761.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|229457833|gb|EEO63554.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
          Length = 376

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 127/268 (47%), Gaps = 42/268 (15%)

Query: 61  QTIRQLSYTE--IRAFIS--KRRTQKIGDRSLK-----------------RSLSGIKSFL 99
           +T+RQL Y+E  +RA+ +  K   Q    R+L+                 R +S  +  L
Sbjct: 100 ETLRQLRYSEHTVRAYTAYFKEFQQYFAGRNLRYIRPEEINAYIVHLIDTRGISSCQQNL 159

Query: 100 -----KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
                K+  ++ +  E     ++  K+  +LP  L++++  +++D             D 
Sbjct: 160 RINSIKFYFEKVLGLERKCYEVKRAKRERTLPDVLSKEEIKSILDAT---------GPDI 210

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213
           R   +  LLY  GLRISE L L P +I   +S +R+ QGKG K R   L   + + + EY
Sbjct: 211 RLFCMFSLLYSAGLRISELLDLKPHDINVSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEY 270

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
             L         Q  LF   +G+P    +  + +++  +  G+      H LRHSFATHL
Sbjct: 271 TKL------YKPQEWLFERYKGEPFTESIVSKKLKEAAKEAGITKRVYPHLLRHSFATHL 324

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  G DL+ ++ +LGH +L TT++Y ++
Sbjct: 325 IEQGTDLKIVKELLGHNQLKTTEMYVHI 352


>gi|239628231|ref|ZP_04671262.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518377|gb|EEQ58243.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 294

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 139/291 (47%), Gaps = 20/291 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  E ++++  L   R  SK T  SY+ D  Q   FLA   E+ IT   + +++ T + +
Sbjct: 1   MTSEIKSFVSYLRDVRQTSKNTEISYQRDLNQLAAFLA---EKGIT--EVEKVTRTSLNS 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT--TESNILNMRNLKKSNSLPRALNE 131
           +I     +     ++ R L+ IK+F  YL +  +     S +L    ++K   +  ++NE
Sbjct: 56  YILYLEKEGKATTTISRELASIKAFFSYLFREGMIRRDPSELLKAPKIEKKAPVILSVNE 115

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQSTLR 189
                   N LL     +   + R+ A++ LLY  G+R+SE   L L+  N+     T R
Sbjct: 116 V-------NSLLDQPGTSSPKEIRDKAMMELLYATGIRVSELIGLELSDLNMQIGYITCR 168

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIR 248
               G K R+VP   +  +A+  Y +    +L    + P LF    GK ++   F + I+
Sbjct: 169 ---DGLKERMVPFGKTASQAMSIYLERGRRELLKGKESPWLFTNCSGKAMSRQGFWKIIK 225

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                 G+    T HTLRHSFA HL+  G D+ ++Q++LGH   +T Q+Y 
Sbjct: 226 YYGEKAGIQADITPHTLRHSFAAHLIRGGADVHAVQAMLGHSDSTTAQMYA 276


>gi|300723768|ref|YP_003713075.1| int (fragment) [Xenorhabdus nematophila ATCC 19061]
 gi|297630292|emb|CBJ90943.1| Int (fragment) [Xenorhabdus nematophila ATCC 19061]
          Length = 333

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 151/327 (46%), Gaps = 36/327 (11%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + S  L +  Q++L +L+  R  ++ T   Y  + R+F+ +      ++  I T +Q+S+
Sbjct: 1   MASLTLRQHMQHFLDHLDALR-YTRETRAHYRSNLREFVRWC-----DERGITTAQQVSF 54

Query: 69  TEIRAFISKRRTQK------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
            ++ ++      QK      I   ++ + L+ ++   ++L KR+    +    +   ++ 
Sbjct: 55  PQLESWQQHMVAQKNRHGRPIAASTVIKKLTSVRHLFRWLVKRRHLRYNPARELALPRRE 114

Query: 123 NSLPRA-LNEKQ-----ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE--AL 174
             LP   LNE +     A+T  DN L            R+ AIL  L+  G+R SE   L
Sbjct: 115 RRLPWGMLNEPETRRVLAMTGSDNPL----------SVRDRAILETLWSSGIRRSELKRL 164

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGI 233
            L+  ++      +R QGKG + R+VPL  S R  +  Y  D+ P  +       LF   
Sbjct: 165 QLSELDLAGGMLFVR-QGKGRQDRVVPLGESARHWVQRYLNDVRPRLVWAKDPGYLFLSQ 223

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           +G  L  G   + +R       +      H  RH  AT +L NG D R IQ+ILGH  L 
Sbjct: 224 QGSALAEGTLTQIVRNALHRADIDKPGGCHLFRHGMATQMLKNGADTRHIQAILGHASLE 283

Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           +TQIYT V   +    + E+++QTHP+
Sbjct: 284 STQIYTRVAIGH----LKEVHNQTHPA 306


>gi|60681230|ref|YP_211374.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343]
 gi|60492664|emb|CAH07437.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343]
          Length = 294

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 127/268 (47%), Gaps = 42/268 (15%)

Query: 61  QTIRQLSYTE--IRAFISKRRT--QKIGDRSLK-----------------RSLSGIKSFL 99
           +T+RQL Y+E  +RA+ +  R   Q    R+L+                 R +S  +  L
Sbjct: 18  ETLRQLRYSEHTVRAYTAYFREFQQYFAGRNLRYIRPEEINAYIVHLIDTRGISSCQQNL 77

Query: 100 -----KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
                K+  ++ +  E     ++  K+  +LP  L++++  +++D             D 
Sbjct: 78  RINSIKFYFEKVLGQERKCYEVKRAKRERTLPDVLSKEEIKSILDAT---------GPDI 128

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213
           R   +  LLY  GLRISE L L P +I   +S +R+ QGKG K R   L   + + + EY
Sbjct: 129 RLFCMFSLLYSAGLRISELLDLKPHDINVSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEY 188

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
             L         Q  LF   +G+P    +  + +++  +  G+      H LRHSFATHL
Sbjct: 189 TKL------YKPQEWLFERYKGEPFTESIVSKKLKEAAKEAGITKRVYPHLLRHSFATHL 242

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  G DL+ ++ +LGH +L TT++Y ++
Sbjct: 243 IEQGTDLKIVKELLGHNQLKTTEMYVHI 270


>gi|319900063|ref|YP_004159791.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319415094|gb|ADV42205.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 376

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 127/268 (47%), Gaps = 42/268 (15%)

Query: 61  QTIRQLSYTE--IRAFISKRRT--QKIGDRSLK-----------------RSLSGIKSFL 99
           +T+RQL Y+E  +RA+ +  R   Q    R+L+                 R +S  +  L
Sbjct: 100 ETLRQLRYSEHTVRAYTAYFREFQQYFAGRNLRYIRPEEINAYIVHLIDTRGISSCQQNL 159

Query: 100 -----KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
                K+  ++ +  E     ++  K+  +LP  L++++  +++D             D 
Sbjct: 160 RINSIKFYFEKVLGQERKCYEVKRAKRERTLPDVLSKEEIKSILDAT---------GPDI 210

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213
           R   +  LLY  GLRISE L L P +I   +S +R+ QGKG K R   L   + + + EY
Sbjct: 211 RLFCMFSLLYSAGLRISELLDLKPHDINVSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEY 270

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
             L         Q  LF   +G+P    +  + +++  +  G+      H LRHSFATHL
Sbjct: 271 TKL------YKPQEWLFERYKGEPFTESIVSKKLKEAAKEAGITKRVYPHLLRHSFATHL 324

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  G DL+ ++ +LGH +L TT++Y ++
Sbjct: 325 IEQGTDLKIVKELLGHNQLKTTEMYVHI 352


>gi|255065181|ref|ZP_05317036.1| tyrosine recombinase XerD [Neisseria sicca ATCC 29256]
 gi|255050602|gb|EET46066.1| tyrosine recombinase XerD [Neisseria sicca ATCC 29256]
          Length = 291

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 114/216 (52%), Gaps = 7/216 (3%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R+LS  K    +L++ +  T++    ++  K++  LP  + E Q   L+      T 
Sbjct: 66  SQARALSACKRLYAWLEETERRTDNPTRFLKAPKQTQKLPTLITEAQIENLLAAPDTDTP 125

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
           H       R+ A+L ++Y  GLR++EA+ L   ++  ++  +R  GKGDK+RIVP+    
Sbjct: 126 H-----GLRDKALLEVMYATGLRVTEAVKLQLGDLDLNRGCIRTIGKGDKLRIVPMGEEA 180

Query: 207 RKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              +  Y  +  P  L   I   +F   +   ++  +    ++      G+  S + H L
Sbjct: 181 VYWVERYCAESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKNYAEAAGIT-SLSPHGL 239

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           RH+FATHL+++G DLR++Q +LGH  ++TTQIYT+V
Sbjct: 240 RHAFATHLVNHGVDLRAVQLMLGHANINTTQIYTHV 275


>gi|331271115|ref|YP_004385824.1| site specific tyrosine recombinase XerC [Clostridium botulinum
           BKT015925]
 gi|329127610|gb|AEB77552.1| site specific tyrosine recombinase XerC [Clostridium botulinum
           BKT015925]
          Length = 334

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 154/336 (45%), Gaps = 53/336 (15%)

Query: 11  SFELLKERQNWLQNL--------EIERGLSKLTLQSYECDTRQFLIFLAFYTE------- 55
           +FE ++E+ + L           E  +G S  T++ YE D   F  FL  Y         
Sbjct: 6   NFEDIREKTDTLPQCMTSFFNYSETIKGNSIGTIKGYEVDLTMFFRFLKIYKNLVPNKLE 65

Query: 56  -EKITIQTI-----RQLSYTEIRAFIS---KRRTQKIGDRSLKRSLSGIKSFLKYLKKRK 106
            E+I I  I     ++L  T++ AF+S   K R      R+  R +S +K+F KYL  + 
Sbjct: 66  FEEIPINDIDYNFLKELKLTDLYAFMSFTEKYRNNSSNTRA--RKVSTLKAFFKYLYGKI 123

Query: 107 ITTESNI---LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS----AI 159
              + NI   L    L+K N +   L E + L  V             ID +N      I
Sbjct: 124 KVLDYNIAEELEKPKLEKRNPIYLTLEESRKLLSV-------------IDGKNKERDYCI 170

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL--- 216
           L +   CGLRISE  S+    I +D  TL + GKG+K R V L  +   +I +Y  +   
Sbjct: 171 LNIFLNCGLRISELCSIQISKIKED--TLTVIGKGNKERTVYLNKACMDSITDYLKVRNS 228

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLS 275
           C   + L  +  LF       ++    ++ +++     GL  +  T H LRH+ AT +  
Sbjct: 229 CKARVPLEDKDILFLNKNYGHISKRSVEKLVKKYVEKAGLDTTKYTPHKLRHTAATLMFK 288

Query: 276 NGG-DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            GG D+R +Q ILGH  +STTQIYT+V+++   D +
Sbjct: 289 YGGVDIRKLQLILGHESISTTQIYTHVDNEGLRDAV 324


>gi|288801073|ref|ZP_06406529.1| integrase/recombinase XerC [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332007|gb|EFC70489.1| integrase/recombinase XerC [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 297

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 151/306 (49%), Gaps = 17/306 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT--EEKITIQTIRQLSYTEIRAFISKR 78
           +L  L+ E+  S LT++SY  D + F    +++T  +  ++ +TI   +  ++R++I   
Sbjct: 6   FLNYLKYEKRRSLLTVESYSEDLKAFQ---SYFTNLDSLLSWETI---TANDVRSWIESM 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     ++ R LS ++SF ++ + R    +    N+   KK   LP+ L E +   L+
Sbjct: 60  MDKGNTATTINRRLSALRSFYRFARLRLAYEKDPAKNVIGPKKQKLLPQFLKEVEMERLL 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D+VL     E+     R+  I+ L Y  G+R+SE  +L   +I   Q  +++ GK +K R
Sbjct: 120 DDVLQGDDFES----VRDRIIILLFYETGVRLSELTALNCCDIDLMQRQIKVTGKRNKQR 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVP    +   +  Y  +     N+ +   LF   +G  +     +R +      +    
Sbjct: 176 IVPFGEKLSLELRAYILIRGERENI-VDDALFVSNKGSRMPSTTIRRRVEHYLSQVSTLK 234

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FAT +L+N  D+ S++ +LGH  L  T++YT+   ++    + ++Y + H
Sbjct: 235 KRSPHVLRHTFATVMLNNDADIESVRHLLGHESLKATEVYTHTTFEH----LKKVYSKAH 290

Query: 319 PSITQK 324
           P  ++K
Sbjct: 291 PRSSRK 296


>gi|78777445|ref|YP_393760.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
 gi|78497985|gb|ABB44525.1| tyrosine recombinase XerD subunit [Sulfurimonas denitrificans DSM
           1251]
          Length = 278

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 151/306 (49%), Gaps = 43/306 (14%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E + +++ + + + LS+ ++ +Y CD +Q  + L          + +  L    +   +S
Sbjct: 4   ELEAFIEYISVIKALSRKSVDAYTCDLKQIELALN---------KPLISLDSKTLFNLLS 54

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ--- 133
           + + +    R+L R LS + +F  +  K +   E   +    + K   LP+ L+ +Q   
Sbjct: 55  EYKNK----RTLNRKLSSVNAFFDFCYKNQFVDEKKKVKFSKIPKL--LPKFLSYQQIQN 108

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           AL+ VD         +  +  R+ A++  LY  G RISE L+L  ++I  +   +R   K
Sbjct: 109 ALSQVDR--------SSVLGLRDYAMIIFLYATGARISECLALRREDIEGEWLHIR-HAK 159

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K RIVP+    + A+  Y +    +L    +  ++   +G+ L+  +    I Q  +Y
Sbjct: 160 GEKERIVPIAFVAKTAVDAYMN----ELKKTKEY-VWSNYKGEKLSR-ISAYKITQ--KY 211

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           LG+    + H LRHS+AT L++ G DLR +Q +LGH  L TTQIYT++  ++    + E 
Sbjct: 212 LGV----SPHVLRHSYATALIAGGADLRVVQELLGHSSLLTTQIYTHIQKQD----LKET 263

Query: 314 YDQTHP 319
            +  HP
Sbjct: 264 LEVCHP 269


>gi|150020077|ref|YP_001305431.1| phage integrase family protein [Thermosipho melanesiensis BI429]
 gi|149792598|gb|ABR30046.1| phage integrase family protein [Thermosipho melanesiensis BI429]
          Length = 282

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 145/301 (48%), Gaps = 29/301 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N+   L   R  S+ TL++Y  D R+FL ++          + I+++   +I  F+   
Sbjct: 5   ENFSDYLAHVRRHSENTLKAYLKDVRKFLEYIN---------KPIKEIERKDIETFLKAL 55

Query: 79  RTQKIGDRS-----LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
              +I + S     + R +S + SF  YL+     + + +  +++ +    +P  L E++
Sbjct: 56  SKGEITENSPRETTISRYISSLNSFFNYLELSGTISNNPMERIKHPRLRRKIPDFLTEEE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-G 192
              L+D        ET   + +    + LLY  GLRISE  +L   +I      LRI+ G
Sbjct: 116 IKKLIDVF----DEET---EMKKKLAISLLYYAGLRISELCNLRTTDISFIPPFLRIEMG 168

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R+VPL   V   + +Y +L       N ++ +F     K ++P    R+++   +
Sbjct: 169 KGRKDRLVPLPDKVLPLLQKYLELK------NPKIYVFEN-EAKHVHPSTVFRWLKDGVK 221

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +      HTLRHS+ATHL+  G +++ +Q +LGH  LSTT IY +V  +   D + +
Sbjct: 222 RAKIKKQVHPHTLRHSYATHLIRKGVNIKVVQELLGHTNLSTTSIYLHVADQEKFDAVKK 281

Query: 313 I 313
           +
Sbjct: 282 L 282


>gi|254172394|ref|ZP_04879069.1| integrase/recombinase [Thermococcus sp. AM4]
 gi|214033323|gb|EEB74150.1| integrase/recombinase [Thermococcus sp. AM4]
          Length = 283

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 124/233 (53%), Gaps = 18/233 (7%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+++ R +   +RSL   +  ++++ ++     +  E+    ++  K   SLP+AL  ++
Sbjct: 51  FLARLRREGYSNRSLNLVVQALRAYFRF---EGLDEEAE--KLKPPKVPKSLPKALTPEE 105

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG- 192
              ++  + L           R+  I+ LLYG GLR+SE  +L   ++  D+  + ++G 
Sbjct: 106 VRKILSVIPLTRR--------RDRLIVLLLYGAGLRVSELCNLKRGDVDLDRGIITVRGG 157

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R+VP+ P++ + I  Y      D +  + + + RG + + L+P      + +  +
Sbjct: 158 KGAKDRVVPISPALAEEIRAYLRERK-DNSEYLLVEVRRGTKDR-LSPKTVWYLLNRYGK 215

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             G+    T H LRHSFATH+L  G D+R+IQ +LGH  LSTTQIYT V  ++
Sbjct: 216 KAGV--KVTPHMLRHSFATHMLERGVDIRAIQELLGHSNLSTTQIYTKVTVEH 266


>gi|332969737|gb|EGK08751.1| tyrosine recombinase XerD [Kingella kingae ATCC 23330]
          Length = 294

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 121/238 (50%), Gaps = 17/238 (7%)

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           R+  R LS  K    +L ++    ++   +++  K   +LP+ + E Q   L+    + T
Sbjct: 68  RTQSRCLSAAKRLYAWLIEQGKRADNPCRDLKTAKLPRTLPQLITEAQIDALLAAPNVDT 127

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL--- 202
            H       R+ A+L L+Y  GLR+SEA+ L    +   Q  + I GKGDK RIVPL   
Sbjct: 128 PH-----GLRDKALLELMYATGLRVSEAIGLRLHELKLLQGMVSIIGKGDKQRIVPLGEE 182

Query: 203 -LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            +  + + + E  D      N ++   +F   +   +   +    + +  + +G+ +  +
Sbjct: 183 AIFWLERYLHEARDTLLKGANCDV---VFVSQKCNGITRQLAWMAVNKYAQQVGI-VGLS 238

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            H LRH+FATHL+++G DLR +Q +LGH  L+TT+IYT+V +      + ++ D  HP
Sbjct: 239 PHGLRHAFATHLVNHGADLRVVQLLLGHANLTTTEIYTHVANVR----LKQVVDTHHP 292


>gi|260890377|ref|ZP_05901640.1| tyrosine recombinase XerD [Leptotrichia hofstadii F0254]
 gi|260859997|gb|EEX74497.1| tyrosine recombinase XerD [Leptotrichia hofstadii F0254]
          Length = 257

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 112/223 (50%), Gaps = 13/223 (5%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +K+   S+ R +S +K+F K+    K   +     ++ LK+   LP  L  K+   +VDN
Sbjct: 29  EKLRRNSVLRKVSALKTFYKFCYLNKDVEKDPTGMIKTLKREQRLPEILTLKEMKQIVDN 88

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGDKIRI 199
              HT         +N  I+ +L   G RISE L+L  +++ + D   +++ GKG K RI
Sbjct: 89  CP-HTPE-----GMQNKLIIKILIATGARISETLNLEIKDVENQDYEFIKVLGKGSKYRI 142

Query: 200 VPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +P+  S+   I  Y  +  P   N +    +F   R +      F + ++ + +   +  
Sbjct: 143 IPIYDSLENEIKNYLAIYRPKLKNASESFKIFPNTRREK-----FWKDLKTIAKNAKIEK 197

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +   H  RHS AT LL NG D+R +Q ILGH  ++TT++YT+V
Sbjct: 198 NVYPHIFRHSLATILLGNGADIRIVQEILGHANITTTEVYTHV 240


>gi|254508879|ref|ZP_05120988.1| super-integron integrase IntIA [Vibrio parahaemolyticus 16]
 gi|219548193|gb|EED25209.1| super-integron integrase IntIA [Vibrio parahaemolyticus 16]
          Length = 320

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 90/194 (46%), Gaps = 38/194 (19%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS----- 205
           ID R    + LLYG GLR+ E + L  Q+I  D   LR+ QGKG K R+V L        
Sbjct: 118 IDPRYKLHIMLLYGSGLRVMECVRLRVQDIDYDYKALRVWQGKGGKNRVVTLASEAISLL 177

Query: 206 ------------------------VRKAILEYYDLCPFDLNLNIQLPLFR--------GI 233
                                   +R ++   Y     D N +   P  +         +
Sbjct: 178 KEQQGIALRYYKKDINSPGYAGVHIRPSLQRKYPEAELDFNWHFLFPSHQLSVDPNTGEL 237

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           +   +N    QR +++  +  G+  + T HTLRHSFATHLL +G D+R++Q  LGH  + 
Sbjct: 238 KRHHINETSLQRAVKRSAKEAGITKAVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVK 297

Query: 294 TTQIYTNVNSKNGG 307
           TTQIYT+V  + GG
Sbjct: 298 TTQIYTHVIERGGG 311


>gi|217076522|ref|YP_002334238.1| site-specific recombinase XerD [Thermosipho africanus TCF52B]
 gi|259710439|sp|B7IFN3|XERC_THEAB RecName: Full=Tyrosine recombinase xerC
 gi|217036375|gb|ACJ74897.1| site-specific recombinase XerD [Thermosipho africanus TCF52B]
          Length = 283

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 143/289 (49%), Gaps = 25/289 (8%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYT---EEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           R  S+ TL++Y+ D R+FL ++       E K   + ++ LS  +I    S R T     
Sbjct: 16  RRHSENTLKAYKKDVRKFLTYVGKQINNIERKDVEEFLKALSKGDITGE-SPRET----- 69

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            ++ R +S + SF  YL+   +  E+ +  +++ +    +P  L E +  +L+       
Sbjct: 70  -TISRYISSLNSFFNYLELSGMIYENPMERIKHPRIRRKIPDFLTEDEVSSLIGAF---- 124

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLP 204
               +  + R    + LLY  GLRISE  +L   +I      LR++ GKG K R+VPL  
Sbjct: 125 ---NEENELRQKTAISLLYYAGLRISELCNLRTTDISFIPPFLRVEMGKGRKDRLVPLPD 181

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            V   + +Y DL       N ++ +F   + K ++P    R++++  +   +      HT
Sbjct: 182 KVIPILKKYIDLE------NPKIFVFENGK-KHVHPSTVFRWLKEGVKRANIKKDVHPHT 234

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           LRHS+ATHL+  G +++ +Q +LGH  LSTT IY +V  +   D + ++
Sbjct: 235 LRHSYATHLIRKGVNIKVVQELLGHTNLSTTSIYLHVADQEKFDAVKKL 283


>gi|222529381|ref|YP_002573263.1| site-specific tyrosine recombinase XerC [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222456228|gb|ACM60490.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 328

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 92/295 (31%), Positives = 147/295 (49%), Gaps = 37/295 (12%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAF-ISKRRTQKI--------- 83
           T++ Y  D R FL +L       ++ I+ I  L   ++  F I K +T  +         
Sbjct: 27  TIKEYYYDLRTFLRYLKAKDLNMLSQIEKIEDLENIDVSNFEIEKLKTLTLSNLYEYFSF 86

Query: 84  -------GDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPR--ALNE-K 132
                  G  +  R ++ I+SF KYL  K K+  ++   ++ + K     PR   LNE K
Sbjct: 87  LATRFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYLTLNESK 146

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + L+ +D        E K    R+ AI+ L   CGLR+SE +++   +I DD   LRI G
Sbjct: 147 KLLSAIDG-------ENK---ERDFAIITLFLNCGLRLSELVNINLSDIKDDM--LRIVG 194

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG+K RI+ L  + + AI  Y  + P +  +  +  LF   R K ++    Q  + +  +
Sbjct: 195 KGNKERIIYLNKACKDAIENYLKVRPTE-GVKDKDALFLSERKKRISRRTVQYIVEKYVK 253

Query: 253 YLGL-PLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSKN 305
             G+     +AH LRH+ AT +  +G  D+RS+Q+ILGH  +STT+IYT+VN  +
Sbjct: 254 MAGINQKKISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDD 308


>gi|327313166|ref|YP_004328603.1| tyrosine recombinase XerC [Prevotella denticola F0289]
 gi|326944725|gb|AEA20610.1| tyrosine recombinase XerC [Prevotella denticola F0289]
          Length = 292

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 141/309 (45%), Gaps = 33/309 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +ER  S +T+ SY  D   F         E+   +   Q+++  +   + +   
Sbjct: 5   FLDYLRLERNYSPMTVISYRKDLEAF---------ERFCQELGPQITWESVDTDVVRDWM 55

Query: 81  QKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           + + D+     S+ R +S ++SF ++  +  + ++  +  ++  ++   LP+ L E +  
Sbjct: 56  EDMMDKGNAASSVNRRISALRSFYRFALRCGLVSKDPVHGLQGPRRQKPLPQFLKESEME 115

Query: 136 TLVDNVLLHTSHETKWIDARNSAI----LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            L+D  +        W D     +    +   Y  G+R+SE   L  +++ D    L++ 
Sbjct: 116 QLLDPAM--------WTDGYGDVLARTLIVTFYETGIRLSELTGLDDRDVDDVTCELKVT 167

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQL 250
           GK +K RI+P    + + +  Y   C  D       P LFR  +G+ +     +  +++ 
Sbjct: 168 GKRNKQRIIPFGKELEETLAAYR--CVRDARTGDSSPALFRTEKGERMTNAQVRALVKKN 225

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              +      T H LRH+FAT +L++   L S++ +LGH  LSTT+IYT+   +     +
Sbjct: 226 LSRVSTLKKRTPHVLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQ----L 281

Query: 311 MEIYDQTHP 319
            ++Y   HP
Sbjct: 282 KKVYKNAHP 290


>gi|319945231|ref|ZP_08019493.1| tyrosine recombinase XerC [Lautropia mirabilis ATCC 51599]
 gi|319741801|gb|EFV94226.1| tyrosine recombinase XerC [Lautropia mirabilis ATCC 51599]
          Length = 332

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 129/267 (48%), Gaps = 23/267 (8%)

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            +IR +++      +   SL R LS  + F   L +      + +  +R  K+   LP+A
Sbjct: 13  ADIRRWVAAAARDGLSPASLARRLSAWRGFFDALAEDGRILANPVQGVRPPKRPRRLPKA 72

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----- 183
           L   QA+ LVD  +     E  +  +R+ A+  L Y  GLR+SE  +L  + +       
Sbjct: 73  LPVDQAVQLVDGPV---EAEQAFTASRDRAMAELFYSSGLRLSELTALDHRWLQASGDGA 129

Query: 184 ------DQSTLRIQ--GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRG 232
                 D+    +Q  GKG K R VP+  +   A+  + ++    L  +      PLF  
Sbjct: 130 RSSAWLDRPAAEVQVLGKGGKRRTVPVGRAALAALDAWLEIRGEWLAAHPAADTAPLFLS 189

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           ++G+ L+    Q  +  L +  GLP     H LRHSFA+H+L + GDLR++Q +LGH  +
Sbjct: 190 LQGRRLSNRSVQLRMDALAQRRGLPQHVHPHVLRHSFASHMLQSSGDLRAVQELLGHASI 249

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHP 319
            TTQ+YT ++ ++    +  +YD  HP
Sbjct: 250 GTTQVYTALDFQH----LAAVYDAAHP 272


>gi|254818892|ref|ZP_05223893.1| site-specific tyrosine recombinase XerD [Mycobacterium
           intracellulare ATCC 13950]
          Length = 209

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 102/206 (49%), Gaps = 7/206 (3%)

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +R       LP++L   Q L L++     +  +   +  RN A+L LLY  G RISEA+ 
Sbjct: 6   VRPPTPGRRLPKSLTVDQVLALLEGAGGDSPADGP-LTLRNRALLELLYSTGARISEAVG 64

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGI 233
           L   ++     ++ ++GKG K R+VP+      A+  Y      DL    +    +F  +
Sbjct: 65  LDVDDVDTQARSVLLRGKGGKQRLVPIGRPAVAALDAYLVRGRSDLARRGRGTPAIFLNV 124

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           RG  L+     + ++      G+    + H LRHSFATHLL  G D+R +Q +LGH  ++
Sbjct: 125 RGGRLSRQSAWQVLQDAAERAGITSGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVT 184

Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHP 319
           TTQIYT V        + E++ + HP
Sbjct: 185 TTQIYTMVTVHA----LREVWAEAHP 206


>gi|269962907|ref|ZP_06177246.1| site-specific recombinase IntI [Vibrio harveyi 1DA3]
 gi|269832352|gb|EEZ86472.1| site-specific recombinase IntI [Vibrio harveyi 1DA3]
          Length = 320

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 136/322 (42%), Gaps = 65/322 (20%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKRRTQKIGD 85
           I R  +K T+++Y    +++++F       K++   + R LS+  I         +K+  
Sbjct: 14  ISRHYAKKTIETYLFWIKRYIVFHQLAHPSKLSEDDVERFLSHLAI--------DEKVAV 65

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLL 143
           ++   +L+ I SFL     R+       LNMR  K      LP  L   +    V +   
Sbjct: 66  KTQALALNAI-SFLY----REYFQMPLSLNMRFQKSLTEKKLPVVLTRDEVRRFVQH--- 117

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV-- 200
                   ID +    + LLYG GLRI E L L  Q+I  D   LR+ QGKG K R V  
Sbjct: 118 --------IDPKYKLHIQLLYGSGLRIMECLRLRIQDIDYDYGALRVWQGKGGKNRTVTL 169

Query: 201 ------PLLPSVRKAILEY---------------------YDLCPFDLNLNIQLPLFR-- 231
                 PL   V  A   Y                     Y     D N +   P  +  
Sbjct: 170 AKELHEPLKAQVSLARDYYQKDRHMGGYAGVYISDGLRRKYPGAELDFNWHFLFPSTKLS 229

Query: 232 ------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
                   R   +N    QR +++  +  G+  S T HTLRHSFATHLL +G D+R++Q 
Sbjct: 230 VDDDTGEFRRHHINESAIQRAVKRATKDAGIEKSVTCHTLRHSFATHLLESGADIRTVQE 289

Query: 286 ILGHFRLSTTQIYTNVNSKNGG 307
            LGH  + TTQIYT+V  +  G
Sbjct: 290 QLGHTDVKTTQIYTHVIERGAG 311


>gi|312135197|ref|YP_004002535.1| integrase family protein [Caldicellulosiruptor owensensis OL]
 gi|311775248|gb|ADQ04735.1| integrase family protein [Caldicellulosiruptor owensensis OL]
          Length = 328

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 147/292 (50%), Gaps = 31/292 (10%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAF-ISKRRTQKI--------- 83
           T++ Y  D R FL +L       ++ I+ I  L   ++ +F I K +T  +         
Sbjct: 27  TIKEYYYDLRNFLRYLKAKELNMLSQIEKIEDLENIDVSSFEIEKLKTLTLSNLYEYFSF 86

Query: 84  -------GDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                  G  +  R ++ I+SF KYL  K K+  ++   ++ + K     PR L  +++ 
Sbjct: 87  LATRFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYLTLEESK 146

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+  +      E K    R+ A++ L   CGLR+SE +++   +I DD   LRI GKG+
Sbjct: 147 KLLSAI----DGENK---ERDFAMITLFLNCGLRLSELVNINLSDIKDDM--LRIVGKGN 197

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RI+ L  + ++AI  Y  + P +  +  +  LF   R K ++    Q  + +  +  G
Sbjct: 198 KERIIYLNKACKEAIENYLKVRPTE-GVKDKDALFLSERKKRISRRTVQYIVEKYVKMAG 256

Query: 256 L-PLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +     +AH LRH+ AT +  +G  D+RS+Q+ILGH  +STT+IYT+VN  +
Sbjct: 257 INQKKISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDD 308


>gi|17548311|ref|NP_521651.1| site-specific tyrosine recombinase XerC [Ralstonia solanacearum
           GMI1000]
 gi|34222935|sp|Q8XTL6|XERC2_RALSO RecName: Full=Tyrosine recombinase xerC 2
 gi|17430557|emb|CAD17241.1| probable tyrosine recombinase xerc 2 protein [Ralstonia
           solanacearum GMI1000]
          Length = 347

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 129/243 (53%), Gaps = 23/243 (9%)

Query: 91  SLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           +L+ +K++ K+L +    +   ++ L++  L K   LPRA+   Q    V+ +L      
Sbjct: 96  ALAPLKTWFKWLARENHILYNPASELDLPKLPKH--LPRAILSVQE---VEAILAEADPA 150

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----QGKGDKIRIVPLLP 204
           T +   R+ A+L LLY  G+R  E   L    + D  +T R+     GKG K R+VP+  
Sbjct: 151 TPY-GLRDRAMLELLYSTGIRRMEVAGLA---LYDVDATRRLAFVRDGKGAKDRVVPV-- 204

Query: 205 SVRK-AILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            VR  A L+ Y L     L +  +  LF    G+P++P      +++   + G+      
Sbjct: 205 GVRALAWLDRYLLEARPQLIVAEREALFVTDYGEPVSPEYVASRVKRYMEFAGIQKPGAT 264

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           H LRH+ ATH+L  G D+R +Q++LGH +L+TT+IYT+V+ ++    +  I+D THP+  
Sbjct: 265 HLLRHAMATHMLEAGADVRVLQALLGHAQLNTTEIYTHVSIEH----LRAIHDATHPARL 320

Query: 323 QKD 325
           Q++
Sbjct: 321 QRE 323


>gi|303239825|ref|ZP_07326348.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302592535|gb|EFL62260.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 351

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 103/194 (53%), Gaps = 18/194 (9%)

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
            +++  K+   LP  LN  +   ++++V           + ++ AI+ L+Y  GLR+SEA
Sbjct: 157 FDIKRPKREQKLPSVLNTNEVFKIIESV----------DNLKHRAIIMLIYSAGLRVSEA 206

Query: 174 LSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
            +L  ++I   ++ + I+G KG K R   L  ++ + + +Y+ +         +  LF G
Sbjct: 207 ANLRIEDIDSKRNLIHIKGAKGKKDRYTLLSNAMLELLRQYFKI------YRPECWLFEG 260

Query: 233 IRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
             G K +     Q+   +     G+    + HTLRHSFATHLL NG DLR IQ +LGH  
Sbjct: 261 QNGEKHITVRSIQKVFEKAAFKAGVKKKVSVHTLRHSFATHLLENGTDLRYIQELLGHAS 320

Query: 292 LSTTQIYTNVNSKN 305
            STT+IYT+V+ ++
Sbjct: 321 PSTTEIYTHVSERD 334


>gi|253575352|ref|ZP_04852690.1| phage integrase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845349|gb|EES73359.1| phage integrase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 380

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 136/284 (47%), Gaps = 24/284 (8%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +G S  T ++Y    R++L  LA + + K +  T++    T   A I   RTQ+   + L
Sbjct: 96  KGYSLKTSKAYRGHVRRYLQNLADHLKMK-SPGTLKDEKMTS--AIIDSSRTQQYALQLL 152

Query: 89  KRSLSGIK-----SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
           ++  S        S L++L        S  +     +K   LP  L+E++ L ++     
Sbjct: 153 EQGHSPAYVNQAISALRFLAVEVFKQPSEQMKYIRPQKEKKLPYVLSEQEVLRVIQAP-- 210

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL 202
                    + ++  +LYL Y  GLR+SE + L   +I  ++  LR+ QGKG K R   L
Sbjct: 211 --------TNLKHRTMLYLAYASGLRVSEVVRLKVTDIDPERGILRVRQGKGKKDRHTLL 262

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTT 261
             +    I +Y +       L+  + LF G   G  L+    Q+  ++  +  G+     
Sbjct: 263 SQTAWDMIQKYVEAE----RLSNSMWLFPGQHSGSHLHERSLQKVFQEALQTSGIRKQVG 318

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            H LRHSFATHLL NG DLR IQ +LGH   STT+ YT+V++KN
Sbjct: 319 IHVLRHSFATHLLENGTDLRYIQELLGHANPSTTERYTHVSTKN 362


>gi|327405762|ref|YP_004346600.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327321270|gb|AEA45762.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 370

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 139/277 (50%), Gaps = 31/277 (11%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T+++Y      FL F+   +   IT   + Q +   I A       +K+      + 
Sbjct: 111 SESTIKTYSESIGVFLRFVGVKSTNLITNDDLAQFNNEYIIA-------KKLSASYQNQV 163

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L+ +K F K     K+  E     ++  + + +LP  L++++    V  +L  T+     
Sbjct: 164 LNAVKLFCKVHAGVKLDPEL----VKRPRSAKTLPNVLSKQE----VKQLLYATT----- 210

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210
            + ++  +L ++Y CGLR SE LSL P++I+ D+  + I Q KG K R+VPL   + + +
Sbjct: 211 -NLKHRMMLSVIYACGLRRSELLSLQPKDILSDRLLIHIHQAKGKKDRVVPLSKLLLEQL 269

Query: 211 LEYYDLC-PFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            EYY +  P          +F G + G+       Q  +++      +    T H LRHS
Sbjct: 270 REYYKIYRPIKW-------IFEGEKPGEKYGERSLQLVLKRALTKTNIKKDVTLHWLRHS 322

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +ATHLL +G D+R IQ +LGH   +TT+IYT+V++K+
Sbjct: 323 YATHLLESGTDIRFIQELLGHKSSTTTEIYTHVSNKS 359


>gi|295690851|ref|YP_003594544.1| integrase family protein [Caulobacter segnis ATCC 21756]
 gi|295432754|gb|ADG11926.1| integrase family protein [Caulobacter segnis ATCC 21756]
          Length = 313

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 136/312 (43%), Gaps = 31/312 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ + +ER  ++ TL +Y  D      FL     +      +       + A+      
Sbjct: 12  FLEMMAVERAAARNTLTAYGKDLEDARGFLGRSKRD------LDDADAEAVEAYFQDLGA 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   +  R  S ++ F +++      T+     +   K    LP+ L   +   L+  
Sbjct: 66  RGLSPATAARRRSAVRQFYRFVLGEGWRTDDPSRRVAAPKAGRPLPKVLERAEIERLLAA 125

Query: 141 VLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
               T+  T+  D+    R + I+ L+Y  GLRISE L+L    +  D + L ++GKG K
Sbjct: 126 A---TAPNTEMGDSAQGLRLACIIELIYASGLRISELLALPLTALARDPAYLIVKGKGGK 182

Query: 197 IRIVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
            R+ PL  + R A+  Y        P     +  L   RG  G+     +  R + QL  
Sbjct: 183 ERLAPLNDAARAAVNAYLAGRRTFLPKGAKESPWLFPSRGGSGR-----LTARRVGQLLD 237

Query: 253 YLGLPLS-----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
              +         + H LRH+FATHLL  G DLR IQ++LGH  ++TTQIYT+V     G
Sbjct: 238 DAAIAAGIDRDKVSPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHV----AG 293

Query: 308 DWMMEIYDQTHP 319
           + +  +    HP
Sbjct: 294 EHLAHVVQTKHP 305


>gi|299144068|ref|ZP_07037148.1| tyrosine recombinase XerC [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518553|gb|EFI42292.1| tyrosine recombinase XerC [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 326

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 147/307 (47%), Gaps = 33/307 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFL----AFYTEEKIT-----------IQTI 63
            ++L  L   +G S+ T++ Y  D R FL F+        E+ I            +++I
Sbjct: 13  DDFLSYLSTTKGASQTTIKEYYYDIRIFLNFIFVRKGIIDEKSINEIDIDAINIDILKSI 72

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK-S 122
            ++      +++ K R  K  +++  R +S I++F  YL  +    E N +   ++ K  
Sbjct: 73  NKMDIYAYNSYLDKIR--KNSNKTKYRKISSIRTFFNYLSNKIDVIEFNPIEDIDMPKIE 130

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWID---ARNSAILYLLYGCGLRISEALSLTPQ 179
             LP  L  +++      +LL T  E+K  D    R+ AI+ L   CG+R+SE   L  +
Sbjct: 131 KRLPIYLTLEES-----KLLLKTVSESKIKDKYKTRDYAIVVLFLNCGMRLSELSGLNIK 185

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           ++ +D +TLR+ GKG+K R + L  +   A+  Y +      N      LF   R   L+
Sbjct: 186 DVNND-NTLRVTGKGNKERTIYLNNACVNALKNYLNY----RNDTDNKALFLSNRNTRLS 240

Query: 240 PGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQI 297
               QR + +     GL     T H LRH+ A+ +   G  D+RS+Q ILGH  ++TTQI
Sbjct: 241 NRQIQRMVEKYINASGLDSEKYTVHKLRHTAASLMYQYGDADIRSLQEILGHESVTTTQI 300

Query: 298 YTNVNSK 304
           YT++N K
Sbjct: 301 YTHINDK 307


>gi|261250897|ref|ZP_05943471.1| integron integrase IntI4 [Vibrio orientalis CIP 102891]
 gi|260937770|gb|EEX93758.1| integron integrase IntI4 [Vibrio orientalis CIP 102891]
          Length = 320

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/200 (35%), Positives = 95/200 (47%), Gaps = 44/200 (22%)

Query: 145 TSHET----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRI 199
           T HET    K ID R    + LLYG GLR+ EA+ L   +I  D S +RI QGKG K R+
Sbjct: 107 TKHETRQFLKHIDPRYKLHIMLLYGSGLRVMEAVRLRVHDIDYDYSAVRIWQGKGGKNRV 166

Query: 200 V-------PLLPSVRKAILEYYD-------LCPFDLNLNIQLPLFRG------------- 232
           V       P+L   +     YY             LN ++Q   +RG             
Sbjct: 167 VTLAKELVPMLNEQQALAQRYYKKDMNTPGYAGVWLNQSLQKK-YRGAELEFKWHYLFPS 225

Query: 233 -----------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
                      +R   +N    QR +++  +  G+    T HTLRHSFATHLL +G D+R
Sbjct: 226 NKLSTDPETGLVRRHHINAVALQRAVKRTAKEAGIDKHVTCHTLRHSFATHLLESGADIR 285

Query: 282 SIQSILGHFRLSTTQIYTNV 301
           ++Q  LGH  + TTQIYT+V
Sbjct: 286 TVQEQLGHSDVRTTQIYTHV 305


>gi|323703822|ref|ZP_08115459.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
 gi|323531237|gb|EGB21139.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
          Length = 304

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 139/278 (50%), Gaps = 20/278 (7%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI------SKRRTQKIGDRS 87
           L+ +S E   R    FL +  E KI+I +   ++  + R ++      + +  +K  D  
Sbjct: 19  LSERSIEWYQRTLNKFLEYCEENKISITS---MTVPQARGYVHWLQNATAKTGKKYADNG 75

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           +   +  +K    YL + +   ++    ++ +K    +      ++        +L+  +
Sbjct: 76  INGFIRSVKVMFNYLLEDEYIEKNPFAKVKQIKTDKVIIHTFEPQEV-----KKMLNQFN 130

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
           ++ + D R++ ++ +LY CGLRISEA++L   +I  +++ +++ GKG K RIVP   SV+
Sbjct: 131 KSIYTDLRDALLIRILYDCGLRISEAINLKLTDIDTERNIIKVFGKGHKERIVPFGRSVK 190

Query: 208 KAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAH 263
           + IL+Y  L   +  ++  L    LF   +G PL      R I+ + +   +     + H
Sbjct: 191 REILKY--LAKREKAISKDLDEGYLFSTRQGTPLMIRNVIRKIQTVGKKANIEGKRLSPH 248

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T RH+FA   L  GGDL S+Q I+GH  LSTT+ Y ++
Sbjct: 249 TFRHTFAKTYLMQGGDLFSLQQIMGHSDLSTTRQYVHL 286


>gi|303237489|ref|ZP_07324054.1| putative tyrosine recombinase XerC [Prevotella disiens FB035-09AN]
 gi|302482309|gb|EFL45339.1| putative tyrosine recombinase XerC [Prevotella disiens FB035-09AN]
          Length = 292

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 139/306 (45%), Gaps = 24/306 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L+ L  ER  S+ T+  Y  D   F  F     +E         LS+  I   + + 
Sbjct: 4   EDFLKYLTFERNYSQRTIGEYSEDLHGFEQFYKKLDDE---------LSWENIDTDVVRD 54

Query: 79  RTQKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             + + D+     S+ R LS ++SF +Y  KR          ++  K+   LP+ L E +
Sbjct: 55  WVEYMMDKGNTATSVNRRLSALRSFYRYALKRGFVENDPTYKLQGPKRKKPLPQFLKEAE 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
               +D +L+       + D     I+   Y  G+R+SE + L  ++I      +++ GK
Sbjct: 115 ----MDTLLVPEMWGNTYKDVLARTIILTFYSTGIRVSELVGLNNKDINIVTHEIKVTGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            +K RI+P    + + I  Y  L   +  +  Q  LF   +G+ +     +  ++     
Sbjct: 171 RNKQRIIPFGKELEEQIDTYQKLR--NDEIGEQEALFVTAKGERITTAQVRTMVKANLAK 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +      + H LRH+FAT +L+N   L S++ +LGH  + TT++YT+V  +     + + 
Sbjct: 229 VSTLKKKSPHVLRHTFATAMLNNKAGLESVKKLLGHESIVTTEVYTHVTFEQ----LKKA 284

Query: 314 YDQTHP 319
           Y++ HP
Sbjct: 285 YNEAHP 290


>gi|153829038|ref|ZP_01981705.1| site-specific recombinase IntI4 [Vibrio cholerae 623-39]
 gi|229526098|ref|ZP_04415502.1| integron integrase IntI4 [Vibrio cholerae bv. albensis VL426]
 gi|148875467|gb|EDL73602.1| site-specific recombinase IntI4 [Vibrio cholerae 623-39]
 gi|229336256|gb|EEO01274.1| integron integrase IntI4 [Vibrio cholerae bv. albensis VL426]
          Length = 320

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 92/188 (48%), Gaps = 38/188 (20%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206
           +D ++   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V     L P +
Sbjct: 118 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 177

Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233
           ++ I     YYD                        P++   +   P F+         +
Sbjct: 178 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 237

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH  + 
Sbjct: 238 RRHHMNETVLQKAVRRAAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 297

Query: 294 TTQIYTNV 301
           TTQIYT+V
Sbjct: 298 TTQIYTHV 305


>gi|225018459|ref|ZP_03707651.1| hypothetical protein CLOSTMETH_02406 [Clostridium methylpentosum
           DSM 5476]
 gi|224948768|gb|EEG29977.1| hypothetical protein CLOSTMETH_02406 [Clostridium methylpentosum
           DSM 5476]
          Length = 329

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 154/311 (49%), Gaps = 23/311 (7%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY--------TEEKITIQTI- 63
           +L K  +++L  L   +G S+ T+  Y  D R F  F+  +          E+I I  I 
Sbjct: 6   DLPKLARDYLLYLLTIKGRSQRTVDGYAIDLRTFFRFMKLHRGQVPADCVFEEILINDID 65

Query: 64  ----RQLSYTEIRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTESNILNMR 117
               R +S +++  F++   R++  G ++  R +S ++ F KYL    ++ T++ + N+ 
Sbjct: 66  DNFIRSVSLSDVYEFLNYTMRSRSNGAKTRARKVSSLRGFFKYLTVNTQLLTDNPVKNLE 125

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
                 SLP  L+ +Q++ L+D V   +S  T++   R+  IL L   CG+R+SE + + 
Sbjct: 126 IPAAKKSLPIHLSVEQSVKLLDEVGARSSG-TQY---RDYCILTLFLNCGMRLSELVGIN 181

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIR-G 235
             +   D   L++ GKG+K R+V L  + + AI  Y       L   + +  LF   R G
Sbjct: 182 LSSFDRDSGALKLLGKGNKERLVYLNEACQDAIDNYLTKERGQLKTIVDKDALFLSCRSG 241

Query: 236 KPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLS 293
           K L     Q  +    +  GL  +  + H LRH+ AT L   G  DL  ++ +LGH  + 
Sbjct: 242 KRLGARQVQLVVSGALKAAGLDHMGFSTHKLRHTAATLLYQEGNVDLLVLKEMLGHANVG 301

Query: 294 TTQIYTNVNSK 304
           TT+IYT+V++K
Sbjct: 302 TTEIYTHVSNK 312


>gi|253988429|ref|YP_003039785.1| integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253988435|ref|YP_003039791.1| integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253990473|ref|YP_003041829.1| integrase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|211638960|emb|CAR67575.1| probable integrase/recombinase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779879|emb|CAQ83040.1| putative integrase/recombinase [Photorhabdus asymbiotica]
 gi|253779885|emb|CAQ83046.1| putative integrase/recombinase [Photorhabdus asymbiotica]
 gi|253781923|emb|CAQ85087.1| putative integrase [Photorhabdus asymbiotica]
          Length = 472

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 153/333 (45%), Gaps = 25/333 (7%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
           E +  P+ +       RQ+    LE  RG  LS+ T +SYE    + L F+++   E   
Sbjct: 131 ETHGQPDAIPARFATLRQHLAAWLEAVRGQGLSERTQESYE---ERLLPFISWC--EARG 185

Query: 60  IQTIRQLSYTEIRAFI----SKRRT--QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI 113
           + T  Q+S   + ++     S R+   Q     S +  LS ++ + ++L +R     +  
Sbjct: 186 VMTAPQVSLPLLESYQRWLRSSRKANGQPYSPGSQRDRLSVLRQWFRWLLQRHHILYNPT 245

Query: 114 LNMRNLKKSNSLP-RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
            NM   ++   LP + +NE +  T++    ++T         RN AIL +L+  G+R  E
Sbjct: 246 DNMVLPREEKRLPAQVMNEDETHTVLAATDINTP-----TGLRNRAILEVLWSTGIRRME 300

Query: 173 ALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
             +L    +   +  + + QGKG K R+VP+       +  +  + P          LF 
Sbjct: 301 VANLLLSEVDFGRGVVLVRQGKGGKDRVVPIGEQALHWLSRWLSVRPELTRRGDSGHLFI 360

Query: 232 GIRGKPLNPGVF-QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +G+ L  G   Q     +R+   L      H  RHS AT +L NG D R IQ+ILGH 
Sbjct: 361 TKKGRGLARGTLTQIAADSIRKQAQLAKPGACHLFRHSMATQMLENGADTRHIQAILGHE 420

Query: 291 RLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
           +L TTQIYT V   +    + E+++QTHP+  Q
Sbjct: 421 KLETTQIYTRVAIGH----LKEVHEQTHPAERQ 449


>gi|330997069|ref|ZP_08320931.1| integron integrase [Paraprevotella xylaniphila YIT 11841]
 gi|329571567|gb|EGG53249.1| integron integrase [Paraprevotella xylaniphila YIT 11841]
          Length = 376

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 103/204 (50%), Gaps = 16/204 (7%)

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           +K+  ++ +  E     ++  K+  +LP  L++++  +++D             D R   
Sbjct: 164 IKFYFEKVLGQERKCYEVKRAKRERTLPDVLSKEEIKSILDAT---------GPDIRLFC 214

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC 217
           +  LLY  GLRISE L L P +I   +S +R+ QGKG K R   L   + + + EY  L 
Sbjct: 215 MFSLLYSAGLRISELLDLKPHDINVSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEYTKL- 273

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
                   Q  LF   +G+P    +  + +++  +  G+      H LRHSFATHL+  G
Sbjct: 274 -----YKPQEWLFERYKGEPFTESIVSKKLKEAAKEAGITKRVYPHLLRHSFATHLIEQG 328

Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301
            DL+ ++ +LGH +L TT++Y ++
Sbjct: 329 TDLKIVKELLGHNQLKTTEMYVHI 352


>gi|49476286|ref|YP_034327.1| integrase /recombinase xerD [Bartonella henselae str. Houston-1]
 gi|49239094|emb|CAF28397.1| Integrase /recombinase xerD [Bartonella henselae str. Houston-1]
          Length = 312

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 146/310 (47%), Gaps = 24/310 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY--TEIRAFISK 77
           ++L+ +  ERG  + TL +Y+ D +        + ++++   ++   S    ++   +S 
Sbjct: 9   HFLEMMSAERGACEHTLAAYQRDLQ--------WAQDELFSHSVSLFSAQREDLIGLLSL 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             T      S  R LS ++ F ++L    +  +    N+   ++   LP+ ++E     L
Sbjct: 61  MHTLGFAASSQARRLSTLRQFYQFLYAEGLRADDPSHNIDAPRQGRPLPKVVSENVVTKL 120

Query: 138 VDNVLLHTSHETKWIDARNSAI-----LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +D   L  + E         A+     + +LY  GLRISE +SL  Q +     ++ ++G
Sbjct: 121 LDLAQLEVNQEDYGSKGHFRALRLQLLIEMLYATGLRISELVSLPVQAVRGKDYSILVRG 180

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF--RGIRGKPLNPGVFQRYIRQL 250
           KG K R+V L     + + ++  L          L LF  R   G  +   V  R ++ L
Sbjct: 181 KGKKERMVLLSKKACQVLSQWLSLRD-QGKYAESLYLFPARSETGY-IARQVVARDLKSL 238

Query: 251 RRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            R  G+     + H LRH+FA+HLL NG DLR++Q +LGH  ++TTQIYT+V  +     
Sbjct: 239 ARRAGIKSGGFSPHVLRHAFASHLLQNGADLRAVQHLLGHSDIATTQIYTHVLEEG---- 294

Query: 310 MMEIYDQTHP 319
           +  + ++ HP
Sbjct: 295 LYRLVNEHHP 304


>gi|312127552|ref|YP_003992426.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
 gi|311777571|gb|ADQ07057.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 328

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 122/228 (53%), Gaps = 19/228 (8%)

Query: 84  GDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRAL---NEKQALTLVD 139
           G  +  R ++ I+SF KYL  K K+  ++   ++ + K     PR L     K+ L+ +D
Sbjct: 94  GPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYLTLDESKKLLSAID 153

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                   E K    R+ AI+ L   CGLR+SE +++   +I DD   LRI GKG+K RI
Sbjct: 154 G-------ENK---ERDFAIITLFLNCGLRLSELVNINLSDIKDDM--LRIVGKGNKERI 201

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PL 258
           + L  + ++AI  Y  + P +  +  +  LF   R K ++    Q  + +  +  G+   
Sbjct: 202 IYLNKACKEAIENYLKVRPTE-GVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQK 260

Query: 259 STTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSKN 305
             +AH LRH+ AT +  +G  D+RS+Q+ILGH  +STT+IYT+VN  +
Sbjct: 261 KISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDD 308


>gi|298482054|ref|ZP_07000243.1| tyrosine recombinase [Bacteroides sp. D22]
 gi|298271918|gb|EFI13490.1| tyrosine recombinase [Bacteroides sp. D22]
          Length = 376

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 103/204 (50%), Gaps = 16/204 (7%)

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           +K+  ++ +  E     ++  K+  +LP  L++++  +++D             D R   
Sbjct: 164 IKFYFEKVLGQERKCYEVKRAKRERTLPDVLSKEEIKSILDAT---------GPDIRLFC 214

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC 217
           +  LLY  GLRISE L L P +I   +S +R+ QGKG K R   L   + + + EY  L 
Sbjct: 215 MFSLLYSAGLRISELLDLKPHDINVSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEYTKL- 273

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
                   Q  LF   +G+P    +  + +++  +  G+      H LRHSFATHL+  G
Sbjct: 274 -----YKPQEWLFERYKGEPFTESIVSKKLKEAAKEAGITKRVYPHLLRHSFATHLIEQG 328

Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301
            DL+ ++ +LGH +L TT++Y ++
Sbjct: 329 TDLKIVKELLGHNQLKTTEMYVHI 352


>gi|150003403|ref|YP_001298147.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
           8482]
 gi|254881306|ref|ZP_05254016.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|294777807|ref|ZP_06743251.1| putative tyrosine recombinase XerC [Bacteroides vulgatus PC510]
 gi|319640308|ref|ZP_07995033.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|149931827|gb|ABR38525.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
           8482]
 gi|254834099|gb|EET14408.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|294448261|gb|EFG16817.1| putative tyrosine recombinase XerC [Bacteroides vulgatus PC510]
 gi|317388083|gb|EFV68937.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
          Length = 293

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 149/307 (48%), Gaps = 25/307 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L  L  E+  S+ T+ SY  D  +F  +     +EK+   T+       +R ++   
Sbjct: 4   DSFLDYLRFEKNYSEKTIVSYGIDLTKFEEYFK-GKDEKVDFTTV---DADLVRGWVMNL 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S+ R LS ++SF ++L K+ +  E  +L +   K    LP  L E++   L+
Sbjct: 60  MENGYTSASVNRKLSSLRSFYRFLLKKGVIEEDPMLKIIGPKNKKPLPVFLKEREMDRLL 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D+V      +  +   R+  +L + Y  G+R+SE + L   ++      +++ GK +K R
Sbjct: 120 DDV----PFKEDFTGCRDRMVLEMFYATGMRLSELIGLNDVDVDFSAFLIKVTGKRNKQR 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPG-VFQRYIRQLRR 252
           ++P    +R+A+  Y  +       N  LP      F    GK + PG V+    R L +
Sbjct: 176 LIPFGEELRRAMSVYLKIR------NEVLPGKAEAFFVLKNGKRMYPGKVYLLVKRNLSK 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            + L    + H LRH+FAT +L+N  +L +++ +LGH  L+TT+IYT+   +     + +
Sbjct: 230 VVSLK-KRSPHVLRHTFATAMLNNEAELGAVKELLGHSSLTTTEIYTHTTFEE----LKK 284

Query: 313 IYDQTHP 319
           +Y+Q HP
Sbjct: 285 VYEQAHP 291


>gi|291550597|emb|CBL26859.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 306

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 149/312 (47%), Gaps = 35/312 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+  E  + L   TL++Y  D RQF      YT E I  +   +   TE+       
Sbjct: 8   EKYLEYCEFRKELDWNTLKAYRIDLRQFFE----YTMEDIPGKEKIEDYITELH------ 57

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTL 137
             +K   +++KR ++ +K++  +L++R+I +++    ++   K+S  LPR +  ++   L
Sbjct: 58  --KKFKQKTIKRKIASVKAYYNFLEEREIISDNPFRKIKVGFKESIILPRIIPREEIEEL 115

Query: 138 VD---------NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++         NV +H      W+  R+ A++  L+  G R+ E  ++   ++  +   +
Sbjct: 116 LNFMYAQENKSNVKVHKF----WL--RDIAVIETLFATGARVYEISNIREDSVNLNTGLI 169

Query: 189 RIQGKGDKIRIVPLLPS-VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           R+ GKG K R + +  S +   +  YY     ++  +     F   RG        +  +
Sbjct: 170 RLMGKGGKERYIQIASSEILDLLKNYYKENAKEIKQS--GFFFVNNRGCRYTEQSIRLML 227

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++  +  G+  + T H  RHSFAT+L+  G D+  +Q ILGH  + TTQIY +V +K   
Sbjct: 228 KKYTKLAGIERNITPHMFRHSFATYLIEEGVDISCVQQILGHSSIKTTQIYIHVAAKKQA 287

Query: 308 DWMMEIYDQTHP 319
               EI  ++HP
Sbjct: 288 ----EILRESHP 295


>gi|300872281|gb|ADK38968.1| IntI4 [Vibrio sp. V82(2010)]
          Length = 293

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 92/188 (48%), Gaps = 38/188 (20%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206
           +D ++   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V     L P +
Sbjct: 95  VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 154

Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233
           ++ I     YYD                        P++   +   P F+         +
Sbjct: 155 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 214

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH  + 
Sbjct: 215 RRHHMNETVLQKAVRRAAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 274

Query: 294 TTQIYTNV 301
           TTQIYT+V
Sbjct: 275 TTQIYTHV 282


>gi|330994896|ref|ZP_08318818.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
 gi|329758157|gb|EGG74679.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
          Length = 291

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 135/301 (44%), Gaps = 34/301 (11%)

Query: 13  ELLKERQNWLQNLEIERGL---SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           E  K  QN   NL I+  L    + T ++YE D R FL  +          +T+ +++  
Sbjct: 13  EAQKAPQNSADNLLIKTWLHNRGENTRRAYESDVRAFLAHVG---------KTLPEVTAP 63

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-PRA 128
           +++ +     +    D + +R L  +KS L Y    ++        +R  K  +SL  R 
Sbjct: 64  DLQNWFD---SLTGADATRRRKLMAVKSLLSYGAAMEMLPRDVGPAVRIPKGRDSLHERI 120

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ--S 186
           L ++Q   L+D        ET   D R   +L +LY  GLRISE  ++  +++   Q   
Sbjct: 121 LTQEQVRALIDG-------ET---DPRRRVMLRVLYATGLRISELCAVRWKDLKRRQQGG 170

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
              + GKG K R V +   V K I+         ++   + P+  G  G PL+     R 
Sbjct: 171 VAHVFGKGGKNRTVEIPAKVWKEIVA------LRVDSRPEAPMVPGHDGGPLSVDAVHRS 224

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +++  +  GLP   +AH LRH++A+H+  NG     +Q  LGH  L+TT  Y++     G
Sbjct: 225 VKRAAKRAGLPEQVSAHWLRHAYASHMQDNGAPAHVVQQQLGHTSLATTTRYSHAREGAG 284

Query: 307 G 307
            
Sbjct: 285 A 285


>gi|153940640|ref|YP_001391047.1| site-specific tyrosine recombinase XerC [Clostridium botulinum F
           str. Langeland]
 gi|152936536|gb|ABS42034.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum F str. Langeland]
 gi|322806030|emb|CBZ03597.1| putative integrase/recombinase [Clostridium botulinum H04402 065]
          Length = 326

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 153/302 (50%), Gaps = 27/302 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY-------TE------EKITIQTIRQL 66
           ++L  L   +G S+ T++SY+ D   F  FL  Y       TE      + I+ + I+ +
Sbjct: 19  DFLNYLRTIKGKSENTIESYKLDLIMFFRFLKLYKGMVPGETEFNDIEIKDISDEDIKNI 78

Query: 67  SYTEIRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTESNILNMRNLKKSNS 124
           S T++ AF+S     +  G  +  R ++ +KSF ++L+ K KI  E+  L + + K S  
Sbjct: 79  SLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKIIKENPALELESPKISKR 138

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
            P        LTL ++  L +S + K+ + R+  I+ +   CGLR+SE   +   NI +D
Sbjct: 139 NP------VYLTLDESKRLLSSIDGKFKE-RDLCIVTMFLNCGLRLSELCGINISNIKND 191

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVF 243
              L + GKG+K R V L  +  K + +Y  +       +  +  LF       +N    
Sbjct: 192 --ILTVVGKGNKERTVYLNKACIKTLNDYLSVRKEMGEKIVDKDALFLSKNYTRINKRSV 249

Query: 244 QRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNV 301
           +  +++  +  GL     + H LRH+ AT +  +GG D+RS+Q ILGH  +STTQIYT+V
Sbjct: 250 EMLVKKYVKKAGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHV 309

Query: 302 NS 303
           +S
Sbjct: 310 DS 311


>gi|302871811|ref|YP_003840447.1| integrase family protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302574670|gb|ADL42461.1| integrase family protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 328

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 121/222 (54%), Gaps = 13/222 (5%)

Query: 87  SLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           S  R ++ I+SF KYL  K K+  ++   ++ + K     PR L  +++  L+  +    
Sbjct: 97  SRARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYLTLEESKKLLSAI---- 152

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
             E K    R+ AI+ L   CGLR+SE +++   +I DD   LRI GKG+K RI+ L  +
Sbjct: 153 DGENK---ERDFAIITLFLNCGLRLSELVNINLSDIKDDM--LRIVGKGNKERIIYLNKA 207

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHT 264
            ++AI  Y  + P +  +  +  LF   R K ++    Q  + +  +  G+     +AH 
Sbjct: 208 CKEAIENYLKVRPTE-GVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQKKISAHK 266

Query: 265 LRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSKN 305
           LRH+ AT +  +G  D+RS+Q+ILGH  +STT+IYT+VN  +
Sbjct: 267 LRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDD 308


>gi|325131793|gb|EGC54493.1| tyrosine recombinase XerD [Neisseria meningitidis M6190]
 gi|325137843|gb|EGC60418.1| tyrosine recombinase XerD [Neisseria meningitidis ES14902]
          Length = 291

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 117/233 (50%), Gaps = 11/233 (4%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R+LS  K    ++++  I T++    ++  K   ++P  + E+Q   L+      T 
Sbjct: 66  SQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLAAPDTDTP 125

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
           H       R+ A+L L+Y  GLR+SEA+ L   ++  D+  +   GKGDK R+VP+    
Sbjct: 126 H-----GLRDKALLELMYATGLRVSEAVGLNFSSVDLDRGCITALGKGDKQRMVPMGQES 180

Query: 207 RKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              +  YY +  P  L       LF   +   ++  +    +++     G+    + H+L
Sbjct: 181 AYWVERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYAGRAGIGY-ISPHSL 239

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           RH+FATHL+ +G DLR +Q +LGH  L+TTQIYT+V +     W+  +  + H
Sbjct: 240 RHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANV----WLQGVVKEHH 288


>gi|254669734|emb|CBA03915.1| site-specific recombinase [Neisseria meningitidis alpha153]
          Length = 291

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 117/233 (50%), Gaps = 11/233 (4%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R+LS  K    ++++  I T++    ++  K   ++P  + E+Q   L+      T 
Sbjct: 66  SQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTDTP 125

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
           H       R+ A+L L+Y  GLR+SEA+ L   ++  D+  +   GKGDK R++P+    
Sbjct: 126 H-----GLRDKALLELMYATGLRVSEAVGLNFGSVDLDRGCITALGKGDKQRMIPMGQES 180

Query: 207 RKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              +  YY +  P  L       LF   +   ++  +    +++     G+    + H+L
Sbjct: 181 AYWVERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYASQAGIG-HISPHSL 239

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           RH+FATHL+ +G DLR +Q +LGH  L+TTQIYT+V +     W+  +  + H
Sbjct: 240 RHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANV----WLQGVVKEHH 288


>gi|312875927|ref|ZP_07735917.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797408|gb|EFR13747.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 325

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 121/225 (53%), Gaps = 13/225 (5%)

Query: 84  GDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           G  +  R ++ I+SF KYL  K K+  ++   ++ + K     PR L   ++  L+ ++ 
Sbjct: 94  GPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYLTLDESKKLLSSI- 152

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
                E K    R+ AI+ L   CGLR+SE +++   +I DD   LRI GKG+K RI+ L
Sbjct: 153 ---DGENK---ERDFAIITLFLNCGLRLSELVNINLSDIKDDM--LRIVGKGNKERIIYL 204

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTT 261
             + + AI  Y  + P +  +  +  LF   R K ++    Q  + +  +  G+     +
Sbjct: 205 NKACKDAIENYLKVRPTE-GVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQKKIS 263

Query: 262 AHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSKN 305
           AH LRH+ AT +  +G  D+RS+Q+ILGH  +STT+IYT+VN  +
Sbjct: 264 AHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDD 308


>gi|300872297|gb|ADK38976.1| IntI4 [Vibrio sp. V96(2010)]
          Length = 291

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 92/188 (48%), Gaps = 38/188 (20%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206
           +D ++   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V     L P +
Sbjct: 96  VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 155

Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233
           ++ I     YYD                        P++   +   P F+         +
Sbjct: 156 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 215

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH  + 
Sbjct: 216 RRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 275

Query: 294 TTQIYTNV 301
           TTQIYT+V
Sbjct: 276 TTQIYTHV 283


>gi|330467056|ref|YP_004404799.1| site-specific tyrosine recombinase XerD [Verrucosispora maris
           AB-18-032]
 gi|328810027|gb|AEB44199.1| site-specific tyrosine recombinase XerD [Verrucosispora maris
           AB-18-032]
          Length = 290

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 95/183 (51%), Gaps = 10/183 (5%)

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
           +  + +T  +  R+ A+L  LYG G RISE + L   ++    + ++++GKG + R+VP+
Sbjct: 108 VQAAGDTAPLALRDRALLEFLYGTGARISETVGLAVDDVDLTDAVVQLRGKGGRDRLVPI 167

Query: 203 LPSVRKAILEYYDLC-PFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-- 258
                +A+  Y     P  +      P +F   RG PL        +R+      LP+  
Sbjct: 168 GGYAMQALGAYLVRARPGLVAAGRGTPRVFLNSRGGPLTRQGAWMILRRAAERAALPVDG 227

Query: 259 --STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HTLRHS+ATHLL  G D+R +Q +LGH  ++TTQ+YT V      D + E+Y  
Sbjct: 228 PQAVSPHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQVYTLVTV----DRLREVYAT 283

Query: 317 THP 319
            HP
Sbjct: 284 AHP 286


>gi|254804633|ref|YP_003082854.1| putative site-specific recombinase/integrase [Neisseria
           meningitidis alpha14]
 gi|254668175|emb|CBA04865.1| putative site-specific recombinase/integrase [Neisseria
           meningitidis alpha14]
          Length = 291

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 117/233 (50%), Gaps = 11/233 (4%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R+LS  K    ++++  I T++    ++  K   ++P  + E+Q   L+      T 
Sbjct: 66  SQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTDTP 125

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
           H       R+ A+L L+Y  GLR+SEA+ L   ++  D+  +   GKGDK R+VP+    
Sbjct: 126 H-----GLRDKALLELMYATGLRVSEAVGLNFGSVDLDRGCITALGKGDKQRMVPMGQES 180

Query: 207 RKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              +  YY +  P  L       LF   +   ++  +    +++     G+    + H+L
Sbjct: 181 AYWVGRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIG-HISPHSL 239

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           RH+FATHL+ +G DLR +Q +LGH  L+TTQIYT+V +     W+  +  + H
Sbjct: 240 RHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANV----WLQGVVKEHH 288


>gi|237795202|ref|YP_002862754.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
 gi|229261716|gb|ACQ52749.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
          Length = 326

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 153/302 (50%), Gaps = 27/302 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY-------TE------EKITIQTIRQL 66
           ++L  L   +G S+ T++SY+ D   F  FL  Y       TE      + I+ + I+ +
Sbjct: 19  DFLNYLRTIKGKSENTIESYKLDLIMFFRFLKLYKGMVPGETEFNDIEIKDISDEDIKNI 78

Query: 67  SYTEIRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTESNILNMRNLKKSNS 124
           S T++ AF+S     +  G  +  R ++ +KSF ++L+ K KI  E+  L + + K S  
Sbjct: 79  SLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKIIKENPALELESPKISKR 138

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
            P        LTL ++  L +S + K+ + R+  I+ +   CGLR+SE   +   NI +D
Sbjct: 139 NP------VYLTLDESKRLLSSIDGKFKE-RDLCIVTMFLNCGLRLSELCGINISNIKND 191

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVF 243
              L + GKG+K R V L  +  K + +Y  +       +  +  LF       +N    
Sbjct: 192 --ILTVVGKGNKERTVYLNKACIKTLNDYLSVRKEIGEKIVDKDALFLSKNYTRINKRSV 249

Query: 244 QRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNV 301
           +  +++  +  GL     + H LRH+ AT +  +GG D+RS+Q ILGH  +STTQIYT+V
Sbjct: 250 EMLVKKYVKKAGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHV 309

Query: 302 NS 303
           +S
Sbjct: 310 DS 311


>gi|239621228|ref|ZP_04664259.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum
           subsp. infantis CCUG 52486]
 gi|239515689|gb|EEQ55556.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum
           subsp. infantis CCUG 52486]
          Length = 357

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 9/156 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           RN+AIL LLY  G+R++E +S+   ++     T+++ GKG+K R+VP     ++A+  + 
Sbjct: 188 RNAAILELLYATGIRVAELVSMDIVDVDFSNRTIKVTGKGNKQRVVPFGLPAQRALETWL 247

Query: 215 D--------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           +                     LF G RG  ++  + +  + +  R  G+P   + H LR
Sbjct: 248 EQGRPVLARTATDAAKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVP-DISPHALR 306

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           HS ATH+L  G DLR +Q +LGH  L TTQ YT+V+
Sbjct: 307 HSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVS 342


>gi|146296950|ref|YP_001180721.1| site-specific tyrosine recombinase XerC [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410526|gb|ABP67530.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 328

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 122/228 (53%), Gaps = 19/228 (8%)

Query: 84  GDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRAL---NEKQALTLVD 139
           G  +  R ++ I+SF KYL  K K+  ++   ++ + K     PR L     K+ L+ +D
Sbjct: 94  GPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYLTLDESKKLLSAID 153

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                   E K    R+ AI+ L   CGLR+SE +++   +I DD   LRI GKG+K RI
Sbjct: 154 G-------ENK---ERDFAIITLFLNCGLRLSELVNINLSDIKDDM--LRIVGKGNKERI 201

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PL 258
           + L  + ++AI  Y  + P +  +  +  LF   R K ++    Q  + +  +  G+   
Sbjct: 202 IYLNKACKEAIENYLKVRPTE-GVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQK 260

Query: 259 STTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSKN 305
             +AH LRH+ AT +  +G  D+RS+Q+ILGH  +STT+IYT+VN  +
Sbjct: 261 KISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDD 308


>gi|325678006|ref|ZP_08157645.1| site-specific tyrosine recombinase XerC [Ruminococcus albus 8]
 gi|324110286|gb|EGC04463.1| site-specific tyrosine recombinase XerC [Ruminococcus albus 8]
          Length = 326

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 95/331 (28%), Positives = 157/331 (47%), Gaps = 42/331 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE--------EKITIQT--IRQL-S 67
           +++L NL I +    LT   Y  D R FL ++    +        E IT++   I  L +
Sbjct: 14  EDFLVNLSIIKNRGDLTTDEYYLDIRTFLRYIKIKNKIVPSETKFENITVKDTPIELLEN 73

Query: 68  YTEIRAF-----ISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNI--LNMRNL 119
           +TE  A+     +   R   +  R+  R  + +K F +YL  K  + ++ NI  L + N+
Sbjct: 74  FTEKDAYQYMVWLKDERQNGVAARA--RKTTSLKQFYEYLANKSHLISKDNISSLEVPNV 131

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K++  LP+ L   +  TL+ ++    +        R+  I+ L   CG+R+SE   +   
Sbjct: 132 KRA--LPKYLTLDEVQTLLSSIRTKNTE-------RDYCIITLFLNCGMRLSELCGININ 182

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI---QLPLFRGIRGK 236
           +I  +  TLR+ GKG K RI+ L  +  KAI +Y    P+  N  +   +  LF   R  
Sbjct: 183 DIAFENKTLRLLGKGRKERIIYLNDNCIKAIEQY---LPYRKNYEMAQNEKALFLSSRKN 239

Query: 237 PLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLST 294
            ++    Q+ I +     GL     T H LRH+ AT +  +NGGD+ +++ ILGH   ST
Sbjct: 240 RISRRRVQKIIEECIFAAGLKNTGVTTHKLRHTAATLMYNNNGGDILAVKEILGHESTST 299

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           T+IYT++    G D M    +     + +KD
Sbjct: 300 TEIYTHL----GSDKMKNTMNVMEDLLKKKD 326


>gi|193214605|ref|YP_001995804.1| integrase family protein [Chloroherpeton thalassium ATCC 35110]
 gi|193088082|gb|ACF13357.1| integrase family protein [Chloroherpeton thalassium ATCC 35110]
          Length = 289

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 141/283 (49%), Gaps = 28/283 (9%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           +NL I++  S+ T   Y C    F  F  ++ EE++   T +Q++ + I   I   +++ 
Sbjct: 18  KNLLIQKRYSQNTQDIY-CSY--FKDFCMYFGEEELEKLTTKQIN-SYILDLI---KSKN 70

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           I      + ++ +K + + +  R    E     +   +K N LP+ L++ +    V ++L
Sbjct: 71  ISISQQNQRINAVKFYFEKVLGR----EKQYYELHRPRKENKLPKVLSKNE----VKSIL 122

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVP 201
           + T       + ++  IL L+Y  GLR SE L+L P +I   +  + I G KG K RI  
Sbjct: 123 VSTD------NIKHKCILMLIYSAGLRRSELLNLKPTDIDSGRMLIHILGAKGKKDRISL 176

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           L  ++ K + +YY         + +  LF G+ G   +P      +++     G+  + T
Sbjct: 177 LSENLLKLLRQYYK------EFHPKKYLFEGLDGGKYSPTSVANILKKASLKAGIHKNVT 230

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            H LRHSFATHLL  G DLR IQ +LGH    TT+IYT+V+ K
Sbjct: 231 PHMLRHSFATHLLEQGTDLRYIQELLGHESSKTTEIYTHVSKK 273


>gi|311108190|ref|YP_003981043.1| tyrosine recombinase XerD [Achromobacter xylosoxidans A8]
 gi|310762879|gb|ADP18328.1| tyrosine recombinase XerD [Achromobacter xylosoxidans A8]
          Length = 327

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 132/295 (44%), Gaps = 26/295 (8%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLA---FYTEEKI---------------TIQTIRQLSY 68
           +E GLS  TL +Y  D   F  +L     Y  E                   + +R    
Sbjct: 23  LEDGLSANTLAAYRRDLTGFARWLEDPEAYAREMADRHGDAAQAHALPAGPAKPLRDAGK 82

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            +I A+ + R  +     +  R L+ ++ F  +  +         L +   K+   +P+ 
Sbjct: 83  ADIEAWFAFRHEETRAT-TANRRLAALRRFYAWALREHRAERDPCLTLIAAKQPPRMPKT 141

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+E+Q      + LL      +    R+ A+L  LY  GLR+SE + +   ++  ++  +
Sbjct: 142 LSEQQV-----DALLRAPDLGQARGLRDRAMLETLYATGLRVSELVGVRALDVSLNEGVV 196

Query: 189 RIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRY 246
           R+  GKG K R+VPL       I  Y      +L    +   LF   R + ++   F + 
Sbjct: 197 RVVLGKGGKDRLVPLGAEAAHWIDLYLKSGRPELAAGRVSDALFITGRAEAMSRQAFWQL 256

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +++      +    + H LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 257 VKKYALLADVRAPLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHV 311


>gi|312793576|ref|YP_004026499.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180716|gb|ADQ40886.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 327

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 121/225 (53%), Gaps = 13/225 (5%)

Query: 84  GDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           G  +  R ++ I+SF KYL  K K+  ++   ++ + K     PR L   ++  L+ ++ 
Sbjct: 94  GPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYLTLDESKKLLSSI- 152

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
                E K    R+ AI+ L   CGLR+SE +++   +I DD   LRI GKG+K RI+ L
Sbjct: 153 ---DGENK---ERDFAIITLFLNCGLRLSELVNINLSDIKDDM--LRIVGKGNKERIIYL 204

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTT 261
             + + AI  Y  + P +  +  +  LF   R K ++    Q  + +  +  G+     +
Sbjct: 205 NKACKDAIENYLKVRPTE-GVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQKKIS 263

Query: 262 AHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSKN 305
           AH LRH+ AT +  +G  D+RS+Q+ILGH  +STT+IYT+VN  +
Sbjct: 264 AHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDD 308


>gi|300872295|gb|ADK38975.1| IntI4 [Vibrio sp. V95(2010)]
          Length = 296

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 92/188 (48%), Gaps = 38/188 (20%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206
           +D ++   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V     L P +
Sbjct: 101 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 160

Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233
           ++ I     YYD                        P++   +   P F+         +
Sbjct: 161 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 220

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH  + 
Sbjct: 221 RRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 280

Query: 294 TTQIYTNV 301
           TTQIYT+V
Sbjct: 281 TTQIYTHV 288


>gi|153831894|ref|ZP_01984561.1| IntI [Vibrio harveyi HY01]
 gi|148871892|gb|EDL70715.1| IntI [Vibrio harveyi HY01]
          Length = 320

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 136/322 (42%), Gaps = 65/322 (20%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKRRTQKIGD 85
           I R  +K T+++Y    +++++F       K+    + R LS+  I         +K+  
Sbjct: 14  ISRHYAKKTIETYLFWIKRYIVFHQLAHPSKLCEDDVERFLSHLAI--------DEKVAV 65

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLL 143
           ++   +L+ I SFL     R+       LNMR  K      LP  L   +    V +   
Sbjct: 66  KTQALALNAI-SFLY----REYFQMPLSLNMRFQKSLTEKKLPVVLTRNEVRRFVQH--- 117

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL 202
                   ID +    + LLYG GLRI E L L  Q+I  D   LR+ QGKG K R V L
Sbjct: 118 --------IDPKYKLHIQLLYGSGLRIMECLRLRIQDIDYDYGALRVWQGKGGKNRTVTL 169

Query: 203 LPSVRKAI-------LEYYDL----------------------CPFDLNLNIQLPLFR-- 231
              + + +        +YY                           D N +   P  +  
Sbjct: 170 AKELHEPLKAQVNLTRDYYQKDRHMGGYAGVYISDGLRRKYPGAELDFNWHFLFPSTKLS 229

Query: 232 ------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
                   R   +N    QR +++  +  G+  S T HTLRHSFATHLL +G D+R++Q 
Sbjct: 230 IDADTGEFRRHHVNESAIQRAVKRAAKDAGIEKSVTCHTLRHSFATHLLESGADIRTVQE 289

Query: 286 ILGHFRLSTTQIYTNVNSKNGG 307
            LGH  + TTQIYT+V  +  G
Sbjct: 290 QLGHTDVKTTQIYTHVIERGAG 311


>gi|187779614|ref|ZP_02996087.1| hypothetical protein CLOSPO_03210 [Clostridium sporogenes ATCC
           15579]
 gi|187773239|gb|EDU37041.1| hypothetical protein CLOSPO_03210 [Clostridium sporogenes ATCC
           15579]
          Length = 326

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 158/317 (49%), Gaps = 27/317 (8%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY-------TE-- 55
           N+ ++    L +   ++L  L   +G S+ T++SY+ D   F  FL  Y       TE  
Sbjct: 4   NIQQLYDPNLPQRLNDFLNYLRTIKGKSENTIESYKLDLIMFFRFLKLYKGMVPGETEFN 63

Query: 56  ----EKITIQTIRQLSYTEIRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITT 109
                 I+ + I+ +S T++ AF+S     +  G  +  R ++ ++SF K+L+ K KI  
Sbjct: 64  DIEISNISDEDIKNISLTDLFAFVSFAENYRNNGSYAKARKVATLRSFFKFLQGKVKIIK 123

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
           E+  L + + K S   P        LTL ++  L +S + K+ + R+  I+ +   CGLR
Sbjct: 124 ENPALELESPKISKRNP------VYLTLDESKRLLSSIDGKFKE-RDLCIVTMFLNCGLR 176

Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLP 228
           +SE   +   NI +D   L + GKG+K R V L  +  K + +Y  +       +  +  
Sbjct: 177 LSELCGINISNIKND--VLTVIGKGNKERTVYLNKACIKTLNDYLSVRKEMGEKIVDKDA 234

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DLRSIQSI 286
           LF       +N    +  +++  +  GL     + H LRH+ AT +  +GG D+RS+Q I
Sbjct: 235 LFLSKNYTRINKRSVEMLVKKYVKKSGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMI 294

Query: 287 LGHFRLSTTQIYTNVNS 303
           LGH  +STTQIYT+V+S
Sbjct: 295 LGHENISTTQIYTHVDS 311


>gi|254449549|ref|ZP_05062986.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198263955|gb|EDY88225.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 320

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/149 (38%), Positives = 82/149 (55%), Gaps = 4/149 (2%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC 217
           +L L YGCG+R  E + L   +I  DQ  +RI Q KG K R V L   +   + +++   
Sbjct: 146 MLSLAYGCGMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRNVMLPSDILGLLRQWWKER 205

Query: 218 PFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           P   + ++  P   LF G R K L+     R  +Q  +  G+    T HTLRHSFATHLL
Sbjct: 206 PTGQDRDVPAPERNLFPGYRSKHLSSRQISRLFKQTAQEAGITKPVTLHTLRHSFATHLL 265

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             G D+R IQ++LGH +L+TT  Y +V +
Sbjct: 266 ERGVDIRVIQALLGHSKLTTTARYASVAT 294


>gi|150016835|ref|YP_001309089.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149903300|gb|ABR34133.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 292

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 145/305 (47%), Gaps = 25/305 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N  +N   E G S+ T+ +Y  D     ++L F   +KI +    +   + + ++I    
Sbjct: 6   NNYKNYLFESGKSENTIYAYVTDVS---LYLKFLNRKKIDLY---ESDKSTVMSYIQNLT 59

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q   +RS+ R +  +++F  YLK   +  E   +  ++ K +  LP+ L  ++    VD
Sbjct: 60  NQGKSERSINRIVISLRNFYSYLKSETLIKEVPKIEYKSSKNNRKLPQILTIEE----VD 115

Query: 140 NVLLHTSHE-TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            ++     + +K I  R++A+L L+Y  G+++SE + L   ++  D + ++        R
Sbjct: 116 KIIRIVEKDCSKGI--RDNALLELMYATGMKVSELIGLNVDDVNLDLNFVKCTDNKHYER 173

Query: 199 IVPLLPSVRKAILEY----YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           ++P+  S  KA+ EY    Y +    ++      LF  + G  L      R +++  R  
Sbjct: 174 LIPIGRSACKALTEYLSIRYKIAQCGVS-----NLFVNLNGNKLTRQGIWRIVKEYSRKA 228

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+      +T RHSFA HLL NG ++R++Q +LG+  L+    Y  + +    D +  IY
Sbjct: 229 GIDKDVNLNTFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTYYEIIN---NDKINYIY 285

Query: 315 DQTHP 319
             THP
Sbjct: 286 MHTHP 290


>gi|299132835|ref|ZP_07026030.1| tyrosine recombinase XerD [Afipia sp. 1NLS2]
 gi|298592972|gb|EFI53172.1| tyrosine recombinase XerD [Afipia sp. 1NLS2]
          Length = 319

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 137/310 (44%), Gaps = 50/310 (16%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE--KITIQTIRQ-LSYTEIRAFISK 77
           +L  L  E+G    TL +Y  D      FLA   ++      Q +R  L+  + R F S 
Sbjct: 13  FLDMLAAEQGAGDNTLNAYRSDLEDLAAFLARAKQDFAHADTQVLRDYLADLDQRGFKSS 72

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    S+ R LS ++   ++L   +  T+     +   K+  +LP+ L+    +  
Sbjct: 73  ---------SVARRLSSMRHLFRFLLNERKRTDDPAAILSGPKRGRALPKVLS----IAD 119

Query: 138 VDNVLLHTSHETKWID---------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           VD  LL  + E    D          R   +L +LY  GLR+SE ++L       D   +
Sbjct: 120 VDR-LLGKAREFADRDQPPLQKVRAMRLWCLLEVLYATGLRVSELVALPLSAARRDARMI 178

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP------LNPGV 242
            ++GKGDK R+VPL  S R       D     L         +G + K       L P  
Sbjct: 179 VVRGKGDKERLVPLNQSSR-------DAMAAYLAAAGTAKEEKGEKAKSEPASKWLFPSS 231

Query: 243 ----------FQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
                     F R +++L    G+ P   + H LRH+FA+HLL NG DLR +Q++LGH  
Sbjct: 232 GESGHLTRQHFARDLKELAVAAGISPRLISPHVLRHAFASHLLHNGADLRIVQTLLGHTD 291

Query: 292 LSTTQIYTNV 301
           +STTQIYT+V
Sbjct: 292 ISTTQIYTHV 301


>gi|254284963|ref|ZP_04959929.1| site-specific recombinase IntI4 [Vibrio cholerae AM-19226]
 gi|150424966|gb|EDN16743.1| site-specific recombinase IntI4 [Vibrio cholerae AM-19226]
          Length = 320

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 92/188 (48%), Gaps = 38/188 (20%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206
           +D ++   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V     L P +
Sbjct: 118 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 177

Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233
           ++ I     YYD                        P++   +   P F+         +
Sbjct: 178 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 237

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH  + 
Sbjct: 238 RRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 297

Query: 294 TTQIYTNV 301
           TTQIYT+V
Sbjct: 298 TTQIYTHV 305


>gi|319637821|ref|ZP_07992587.1| tyrosine recombinase xerD [Neisseria mucosa C102]
 gi|317400976|gb|EFV81631.1| tyrosine recombinase xerD [Neisseria mucosa C102]
          Length = 215

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 99/183 (54%), Gaps = 7/183 (3%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K    LP  + E Q   L+    + T H       R+ A+L ++Y  GLR++EA+ LT  
Sbjct: 23  KSERKLPTLITEAQIDALLAAPDVETPH-----GLRDKALLEVMYATGLRVTEAVKLTLS 77

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPL 238
           +I   + ++R  GKGDK+R+VPL       +  Y +   P  L   I   +F   +   +
Sbjct: 78  DIDLHRGSIRTIGKGDKLRLVPLGQEAAYWVERYCNESRPLLLKNKICDEVFVSQKRSGI 137

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +  +    +++     G+  S + H LRH+FATHL+++G DLRS+Q +LGH  ++TTQIY
Sbjct: 138 SRQLAWMIVKEYAEAAGIA-SLSPHGLRHAFATHLVNHGVDLRSVQMMLGHSDINTTQIY 196

Query: 299 TNV 301
           T+V
Sbjct: 197 THV 199


>gi|229522964|ref|ZP_04412378.1| integron integrase IntI4 [Vibrio cholerae TM 11079-80]
 gi|229340181|gb|EEO05189.1| integron integrase IntI4 [Vibrio cholerae TM 11079-80]
          Length = 320

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 92/188 (48%), Gaps = 38/188 (20%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206
           +D ++   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V     L P +
Sbjct: 118 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 177

Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233
           ++ I     YYD                        P++   +   P F+         +
Sbjct: 178 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 237

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH  + 
Sbjct: 238 RRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 297

Query: 294 TTQIYTNV 301
           TTQIYT+V
Sbjct: 298 TTQIYTHV 305


>gi|15601056|ref|NP_232687.1| site-specific recombinase IntI4 [Vibrio cholerae O1 biovar eltor
           str. N16961]
 gi|121730170|ref|ZP_01682564.1| site-specific recombinase IntI4 [Vibrio cholerae V52]
 gi|147671698|ref|YP_001215774.1| site-specific recombinase IntI4 [Vibrio cholerae O395]
 gi|153803265|ref|ZP_01957851.1| site-specific recombinase IntI4 [Vibrio cholerae MZO-3]
 gi|153817564|ref|ZP_01970231.1| site-specific recombinase IntI4 [Vibrio cholerae NCTC 8457]
 gi|153824064|ref|ZP_01976731.1| site-specific recombinase IntI4 [Vibrio cholerae B33]
 gi|227811914|ref|YP_002811924.1| site-specific recombinase IntI4 [Vibrio cholerae M66-2]
 gi|229506555|ref|ZP_04396064.1| integron integrase IntI4 [Vibrio cholerae BX 330286]
 gi|229510649|ref|ZP_04400129.1| integron integrase IntI4 [Vibrio cholerae B33]
 gi|229514763|ref|ZP_04404224.1| integron integrase IntI4 [Vibrio cholerae TMA 21]
 gi|229517220|ref|ZP_04406665.1| integron integrase IntI4 [Vibrio cholerae RC9]
 gi|229606034|ref|YP_002876738.1| integron integrase IntI4 [Vibrio cholerae MJ-1236]
 gi|254850510|ref|ZP_05239860.1| site-specific recombinase IntIA [Vibrio cholerae MO10]
 gi|255745910|ref|ZP_05419857.1| integron integrase IntI4 [Vibrio cholera CIRS 101]
 gi|262163533|ref|ZP_06031279.1| integron integrase IntI4 [Vibrio cholerae INDRE 91/1]
 gi|262168208|ref|ZP_06035906.1| integron integrase IntI4 [Vibrio cholerae RC27]
 gi|297579606|ref|ZP_06941533.1| site-specific recombinase IntI4 [Vibrio cholerae RC385]
 gi|298500137|ref|ZP_07009943.1| site-specific recombinase IntIA [Vibrio cholerae MAK 757]
 gi|5825613|gb|AAD53319.1|AF179591_1 site-specific recombinase IntI4 [Vibrio cholerae]
 gi|3095165|gb|AAC38424.1| site-specific recombinase IntIA [Vibrio cholerae]
 gi|9657688|gb|AAF96199.1| site-specific recombinase IntI4 [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121628089|gb|EAX60629.1| site-specific recombinase IntI4 [Vibrio cholerae V52]
 gi|124121205|gb|EAY39948.1| site-specific recombinase IntI4 [Vibrio cholerae MZO-3]
 gi|126511989|gb|EAZ74583.1| site-specific recombinase IntI4 [Vibrio cholerae NCTC 8457]
 gi|126518414|gb|EAZ75637.1| site-specific recombinase IntI4 [Vibrio cholerae B33]
 gi|146314081|gb|ABQ18621.1| site-specific recombinase IntI4 [Vibrio cholerae O395]
 gi|227011056|gb|ACP07267.1| site-specific recombinase IntI4 [Vibrio cholerae M66-2]
 gi|227014959|gb|ACP11168.1| site-specific recombinase IntI4 [Vibrio cholerae O395]
 gi|229345256|gb|EEO10229.1| integron integrase IntI4 [Vibrio cholerae RC9]
 gi|229348743|gb|EEO13701.1| integron integrase IntI4 [Vibrio cholerae TMA 21]
 gi|229353094|gb|EEO18034.1| integron integrase IntI4 [Vibrio cholerae B33]
 gi|229356906|gb|EEO21824.1| integron integrase IntI4 [Vibrio cholerae BX 330286]
 gi|229372520|gb|ACQ62942.1| integron integrase IntI4 [Vibrio cholerae MJ-1236]
 gi|254846215|gb|EET24629.1| site-specific recombinase IntIA [Vibrio cholerae MO10]
 gi|255735664|gb|EET91062.1| integron integrase IntI4 [Vibrio cholera CIRS 101]
 gi|262023451|gb|EEY42154.1| integron integrase IntI4 [Vibrio cholerae RC27]
 gi|262028100|gb|EEY46759.1| integron integrase IntI4 [Vibrio cholerae INDRE 91/1]
 gi|297535252|gb|EFH74086.1| site-specific recombinase IntI4 [Vibrio cholerae RC385]
 gi|297542118|gb|EFH78169.1| site-specific recombinase IntIA [Vibrio cholerae MAK 757]
 gi|327485489|gb|AEA79895.1| Integron integrase IntI4 [Vibrio cholerae LMA3894-4]
 gi|327485494|gb|AEA79900.1| Integron integrase IntI4 [Vibrio cholerae LMA3894-4]
          Length = 320

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 92/188 (48%), Gaps = 38/188 (20%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206
           +D ++   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V     L P +
Sbjct: 118 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 177

Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233
           ++ I     YYD                        P++   +   P F+         +
Sbjct: 178 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 237

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH  + 
Sbjct: 238 RRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 297

Query: 294 TTQIYTNV 301
           TTQIYT+V
Sbjct: 298 TTQIYTHV 305


>gi|23465946|ref|NP_696549.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum
           NCC2705]
 gi|312132551|ref|YP_003999890.1| integrase/recombinase-like protein [Bifidobacterium longum subsp.
           longum BBMN68]
 gi|23326657|gb|AAN25185.1| probable integrase/recombinase protein similar to RV2894C
           [Bifidobacterium longum NCC2705]
 gi|311773487|gb|ADQ02975.1| Integrase/recombinase-like protein [Bifidobacterium longum subsp.
           longum BBMN68]
          Length = 357

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 9/156 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           RN+AIL LLY  G+R++E +S+   ++     T+++ GKG+K R+VP     ++A+  + 
Sbjct: 188 RNAAILELLYATGIRVAELVSMDIVDVDFSNRTIKVTGKGNKQRVVPFGLPAQRALETWL 247

Query: 215 D--------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           +                     LF G RG  ++  + +  + +  R  G+P   + H LR
Sbjct: 248 EQGRPVLARTATDAAKSRATNALFLGARGGRIDQRIARDIVHRAAREAGVP-DISPHALR 306

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           HS ATH+L  G DLR +Q +LGH  L TTQ YT+V+
Sbjct: 307 HSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVS 342


>gi|159036854|ref|YP_001536107.1| integrase family protein [Salinispora arenicola CNS-205]
 gi|157915689|gb|ABV97116.1| integrase family protein [Salinispora arenicola CNS-205]
          Length = 363

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 83/157 (52%), Gaps = 6/157 (3%)

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLN 222
           Y  G+R+SEA  L   ++   +  LR+ GKG++ R VP     ++A+  +     P+   
Sbjct: 210 YATGVRVSEACGLDIADVDPGRRVLRVLGKGNRERTVPYGVPAQRALDAWLRHGRPWLAG 269

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
                 L  G RG  LNP   +  + +     GLP  TT H LRH+ ATHLL  G DLR+
Sbjct: 270 PRSANALLLGARGGRLNPTTARGVVARCAAAAGLP-PTTPHGLRHATATHLLEGGADLRT 328

Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           +Q +LGH  L++TQIYT+V+ +     +   Y Q HP
Sbjct: 329 VQELLGHTSLASTQIYTHVSVER----LRAAYRQAHP 361


>gi|187934306|ref|YP_001886003.1| site-specific tyrosine recombinase XerC [Clostridium botulinum B
           str. Eklund 17B]
 gi|187722459|gb|ACD23680.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum B str. Eklund 17B]
          Length = 329

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 151/309 (48%), Gaps = 38/309 (12%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY---TEEKIT--------------IQT 62
           ++L  LE  +  S  T+ +Y+ D   F  F+  Y    +EK T              +++
Sbjct: 19  DFLNYLETIKNKSTNTIAAYKKDLTIFFRFMKLYRGLIKEKNTEFEEIDIRDIDDDFLKS 78

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTESNILNMRNLKK 121
           I+        +FI K R      R+  R ++ +KSF K+L+ K KI  ++  + + + K 
Sbjct: 79  IKLRDLYAFMSFIEKYRNNSAYARA--RKVATLKSFFKFLQGKAKIIVDNPTIELESPKI 136

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           +   P  L   Q++ L+++  L  S++     AR+  IL L   CG+R+SE   ++ + I
Sbjct: 137 NKRQPVYLTLDQSIHLLNS--LDQSNKNY---ARDYCILILFLNCGMRLSELCGISIEKI 191

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGK 236
            DD   L I GKG+K R V L  +  KAI  Y  +     + +  LP     LF     K
Sbjct: 192 RDD--ILTIIGKGNKERTVYLNAACLKAIENYMRI----RDDSKALPENKKFLFLSSHNK 245

Query: 237 PLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLST 294
           P+N    +  I++  +  GL     T H LRH+ AT +   G  D+RS+Q+ILGH  +ST
Sbjct: 246 PINQRTVEIMIKKHIKNAGLTDGKYTPHKLRHTAATLMYKYGEVDIRSLQNILGHENIST 305

Query: 295 TQIYTNVNS 303
           TQIYT+V+ 
Sbjct: 306 TQIYTHVDD 314


>gi|153827714|ref|ZP_01980381.1| chain A, Structural Basis For Broad Dna-Specificity In Integron
           Recombination [Vibrio cholerae MZO-2]
 gi|149737809|gb|EDM52714.1| chain A, Structural Basis For Broad Dna-Specificity In Integron
           Recombination [Vibrio cholerae MZO-2]
          Length = 314

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 92/188 (48%), Gaps = 38/188 (20%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206
           +D ++   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V     L P +
Sbjct: 112 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 171

Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233
           ++ I     YYD                        P++   +   P F+         +
Sbjct: 172 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 231

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH  + 
Sbjct: 232 RRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 291

Query: 294 TTQIYTNV 301
           TTQIYT+V
Sbjct: 292 TTQIYTHV 299


>gi|76803916|gb|ABA55859.1| IntI [Vibrio sp. DAT722]
          Length = 320

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 134/322 (41%), Gaps = 65/322 (20%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKRRTQKIGD 85
           I R  +K T+++Y    +++++F       K+    + R LS+  I         +K+  
Sbjct: 14  ISRHYAKKTIETYLFWIKRYIVFHQLAHPSKLCEDDVERFLSHLAI--------DEKVAV 65

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLL 143
           ++   +L+ I SFL     R+       LNMR  K      LP  L   +    V +   
Sbjct: 66  KTQALALNAI-SFLY----REYFQMPLSLNMRFQKSLTEKKLPVVLTRDEVRRFVQH--- 117

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL 202
                   ID +    + LLYG GLRI E L L  Q+I  D   LR+ QGKG K R V L
Sbjct: 118 --------IDPKYKLHIQLLYGSGLRIMECLRLRIQDIDYDYGALRVWQGKGGKNRTVTL 169

Query: 203 LPS-----------------------------VRKAILEYYDLCPFDLNLNIQLPLFR-- 231
                                           +   + + Y     D N +   P  +  
Sbjct: 170 AKELHDPLKSQVNITRDYYQKDRHMGGYAGVYISDGLRKKYPGAELDFNWHFLFPSTKLS 229

Query: 232 ------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
                   R   +N    QR +++  +  G+  S T HTLRHSFATHLL +G D+R++Q 
Sbjct: 230 IDADTGEFRRHHVNESAIQRAVKRAAKDAGIEKSVTCHTLRHSFATHLLESGADIRTVQE 289

Query: 286 ILGHFRLSTTQIYTNVNSKNGG 307
            LGH  + TTQIYT+V  +  G
Sbjct: 290 QLGHTDVKTTQIYTHVIERGAG 311


>gi|212635507|ref|YP_002312032.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella
           piezotolerans WP3]
 gi|212556991|gb|ACJ29445.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella
           piezotolerans WP3]
          Length = 317

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 144/304 (47%), Gaps = 21/304 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI-TIQTIRQLSYTEIRAFISKRR---- 79
           L + +G S  T+++     ++F+I+     E  I TI  I      +  A+++  R    
Sbjct: 19  LCLAKGQSSDTVRNKRGGLKKFIIWC---QERNISTIDHINLDLMDDYAAYLNSYRKKLD 75

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +G    +  L+ +K+F+KY+ ++ + +++ + ++    K + +P+AL   + +    
Sbjct: 76  NEPLGPAQKRNLLTYVKTFVKYMHRKGLLSKNTLSDIELPSKGHQIPKALYSVEEI---- 131

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            V+L           R+ A L + +  G+R  E + L   +I      + + GKG K R+
Sbjct: 132 EVILEQPLLFGIKGLRDRATLEIFFATGIRRGELVKLNVDDIDFTGKMVCVHGKGKKERL 191

Query: 200 VPLLPSVRKA-ILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           VP+  S R    L +Y   + P    ++    LF    GK   PG       Q  +  G 
Sbjct: 192 VPI--SQRGCEWLAFYTGKIRPRFAFISSGKALFLANNGKRYVPGKLSDMASQYVKLAGF 249

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             +   H  RH+ AT +L NG DLR IQ +LGH  + TTQ+YT+V+ K     + E+Y+ 
Sbjct: 250 DRTGACHLFRHNTATTMLDNGADLRHIQEMLGHASILTTQLYTHVSRKK----LSEVYEA 305

Query: 317 THPS 320
           THPS
Sbjct: 306 THPS 309


>gi|99031762|pdb|2A3V|A Chain A, Structural Basis For Broad Dna-Specificity In Integron
           Recombination
 gi|99031763|pdb|2A3V|B Chain B, Structural Basis For Broad Dna-Specificity In Integron
           Recombination
 gi|99031764|pdb|2A3V|C Chain C, Structural Basis For Broad Dna-Specificity In Integron
           Recombination
 gi|99031765|pdb|2A3V|D Chain D, Structural Basis For Broad Dna-Specificity In Integron
           Recombination
          Length = 320

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 92/188 (48%), Gaps = 38/188 (20%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206
           +D ++   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V     L P +
Sbjct: 118 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 177

Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233
           ++ I     YYD                        P++   +   P F+         +
Sbjct: 178 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 237

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH  + 
Sbjct: 238 RRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 297

Query: 294 TTQIYTNV 301
           TTQIYT+V
Sbjct: 298 TTQIYTHV 305


>gi|94497015|ref|ZP_01303588.1| integrase/recombinase [Sphingomonas sp. SKA58]
 gi|94498362|ref|ZP_01304921.1| integrase/recombinase [Sphingomonas sp. SKA58]
 gi|94422242|gb|EAT07284.1| integrase/recombinase [Sphingomonas sp. SKA58]
 gi|94423387|gb|EAT08415.1| integrase/recombinase [Sphingomonas sp. SKA58]
          Length = 334

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 147/319 (46%), Gaps = 41/319 (12%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           +GN LP ++        Q WL     +R  S  T++SY    R  L F+A      +   
Sbjct: 3   KGNPLPALLRAFF----QEWLAE---QRSASIHTIRSYRDTWRLLLRFVAERKGCGVARL 55

Query: 62  TIRQLSYTEIRAFI---SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK---ITTESNILN 115
           T+  +S  E+RAF+      R   IG R+ +  L+ I+SF  ++  +    I   S +L 
Sbjct: 56  TLTDVSAGEVRAFLHHTEHGRKTTIGTRNCR--LAAIRSFFSFVADKNPEYIAQCSEVLA 113

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEAL 174
           +   ++  S P  L  ++    V+ +L   +  T  ++  R+  +L  LY  G RI EAL
Sbjct: 114 VPLKREPTSAPCYLEPEE----VEAILAQPNRST--LEGLRDHVLLSFLYNSGARIQEAL 167

Query: 175 SLTPQNI-MDDQSTLRIQGKGDKIRIVPLLP---SVRKAILEYYDLCPFDLNLNIQLPLF 230
            L P+ I  D  + +R+ GKG K RI PL P   ++ + +LE     P +        +F
Sbjct: 168 DLCPEAIRFDAPNFVRLYGKGRKERICPLWPETVALLRKLLERQPRAPDER-------IF 220

Query: 231 RGIRGKPLNP-GV---FQRYIRQLRRYLGLPLST---TAHTLRHSFATHLLSNGGDLRSI 283
               G+PL   GV      Y+ Q  +   L L +   T H+ RH+ A HL++ G D+  I
Sbjct: 221 VNRYGEPLGASGVRFKLNAYVEQAAKST-LTLQSKHVTPHSFRHATAVHLVAAGVDITVI 279

Query: 284 QSILGHFRLSTTQIYTNVN 302
           +S LGH  L TT  Y   N
Sbjct: 280 RSWLGHVSLDTTNHYAQAN 298


>gi|58584989|ref|YP_198562.1| site-specific recombinase XerD [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
 gi|58419305|gb|AAW71320.1| Site-specific recombinase XerD [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
          Length = 328

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 107/324 (33%), Positives = 154/324 (47%), Gaps = 38/324 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  L  ER  ++ TL+SY  D  Q   FL        +  T+   S T I+ ++    T
Sbjct: 18  YIDALVSERSATQNTLESYRSDLHQLEDFLLK------SGTTLVGASKTNIKDYVKSLCT 71

Query: 81  QK-IGDRSLKRSLSGIKSFLKYLKKRKIT----TESNILNMRNLKKSNSLPRALNEKQAL 135
           QK     S+ R +S +K+F K L    I       +N   ++N K    LP+ L+ K+ L
Sbjct: 72  QKKYKSSSISRKISAMKNFYKCLFNDGIIDSNPAPANDDELKNPKVFRPLPKYLSVKEML 131

Query: 136 TLVDNVLLHTSHETKWIDARN-SAILYLLYGCGLRISEALSLTPQ------NIMDDQSTL 188
            L+D V    +   K I++R   AIL +LY  G+RISE +S+         N  D +  +
Sbjct: 132 LLIDTVRKSANEPNKEINSRRLCAILDILYSSGMRISELISMKLCEVSHLLNSSDKECYI 191

Query: 189 RIQGKGDKIRIV----PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
            I+GK  K R +      L S+R  +L   +L       +    LF G   KP  P   Q
Sbjct: 192 IIKGKSSKERQILFNEQALQSLRNYLLARDNLISDRKESDW---LFPG--NKPNKPITRQ 246

Query: 245 RYIRQLRRYLGLPLST-----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           R I QL + L    +      + H +RHSFATHLL +G  +  IQ ILGH  LSTTQIYT
Sbjct: 247 R-IGQLVKELAKKCNIDENKISPHVIRHSFATHLLDSGASIMLIQKILGHTNLSTTQIYT 305

Query: 300 NVNSKNGGDWMMEIYDQTHPSITQ 323
           ++ +K   D +      +HP ITQ
Sbjct: 306 HIANKKLKDKLA----NSHP-ITQ 324


>gi|300872287|gb|ADK38971.1| IntI4 [Vibrio sp. V89(2010)]
          Length = 297

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 92/188 (48%), Gaps = 38/188 (20%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206
           +D ++   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V     L P +
Sbjct: 102 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 161

Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233
           ++ I     YYD                        P++   +   P F+         +
Sbjct: 162 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 221

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N  V Q+ +R+  +  G+  + T HTLRHSFATH L  G D+R++Q +LGH  + 
Sbjct: 222 RRHHMNETVLQKAVRRAAQEAGIEKTVTCHTLRHSFATHSLEVGADIRTVQELLGHTDVK 281

Query: 294 TTQIYTNV 301
           TTQIYT+V
Sbjct: 282 TTQIYTHV 289


>gi|310658536|ref|YP_003936257.1| site-specific integrase/recombinase [Clostridium sticklandii DSM
           519]
 gi|308825314|emb|CBH21352.1| putative site-specific integrase/recombinase [Clostridium
           sticklandii]
          Length = 334

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 96/305 (31%), Positives = 143/305 (46%), Gaps = 31/305 (10%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF----ISK 77
             N  I  G S  T+ SY  D + F  + +     +I  Q I  +    I ++    +S 
Sbjct: 28  FTNALISSGKSNNTVVSYYLDIKTFFDYCSI---SEILSQEITDIRPIHINSYYTHLVSV 84

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLK------KRKITTESNILNMRNLKKSNSLPRALNE 131
           R    I   S+KR    +K F  +L+      K  I  +S I     +K     P  L E
Sbjct: 85  RDNNSI---SIKRKKYVMKLFFDFLEEQNEINKNPIPKDSVI--KAKIKNPYKAPTYL-E 138

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LR 189
            + +  ++  +L T+ + ++   RN  I  LL   GLRI+EAL+L   +     +T  L 
Sbjct: 139 IEEIKKINKAILDTN-KNEFTKIRNLFIFNLLIHTGLRINEALNLDLSDFEQGINTNRLY 197

Query: 190 IQGKGDKIRIVPL-LPSVRKAILE---YYDLCPFDLNL-----NIQLPLFRGIRGKPLNP 240
           ++GKG+K R +P+ L S    I E    Y+       L          LF   RG  L  
Sbjct: 198 VKGKGEKERYLPIELNSTFFQIYEEGFVYNFAERYFTLRNKTKTSNCALFISKRGDRLTS 257

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              Q+ +++LR    L  + T H LRH+FATHLL NG ++R +Q +LGH  +STTQIYT+
Sbjct: 258 RYVQKNLQELRLSANLNKNVTPHKLRHTFATHLLKNGTNIRLVQELLGHSSISTTQIYTH 317

Query: 301 VNSKN 305
            NSK+
Sbjct: 318 SNSKD 322


>gi|297559947|ref|YP_003678921.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844395|gb|ADH66415.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 328

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 145/316 (45%), Gaps = 27/316 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L  ER L+  TL +Y  D R++  +LA +      + +  ++   ++  F+   R 
Sbjct: 19  FLDHLSAERALADNTLAAYRRDLRRYRAYLAGHG-----VLSPERVGPAQVGDFLRALRE 73

Query: 81  -----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                  +G  S  R+L+ ++   ++  +   T       +        LP+A+      
Sbjct: 74  GDADHPPLGAASAGRALAAVRGLHRFAAREGWTDADPAAEVSPPAPPMRLPKAVPLASVE 133

Query: 136 TLVDNV----LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----DQST 187
            L+D         +      +  R+ A+L +LYG G R+SEA+ L   ++ D    D + 
Sbjct: 134 RLLDAAGPVGAPASGDRAGLLALRDRALLEVLYGTGARVSEAVGLDVDDVADAVEGDDAV 193

Query: 188 --LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVF 243
             +R +GKG + R+VPL    R+A+  Y       L  + +    LF   RG  L     
Sbjct: 194 GLVRFRGKGGRERVVPLGSHARRALSGYLVRARPGLAASGRGGPALFLNARGGRLTRQGG 253

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              +  +    G+    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V  
Sbjct: 254 WGILAAVAERAGVE-GVSPHTLRHSFATHLLDGGADIRVVQELLGHSSVTTTQIYTLVTV 312

Query: 304 KNGGDWMMEIYDQTHP 319
           ++    + E+Y  +HP
Sbjct: 313 EH----LREVYASSHP 324


>gi|220931948|ref|YP_002508856.1| phage integrase family protein [Halothermothrix orenii H 168]
 gi|219993258|gb|ACL69861.1| phage integrase family protein [Halothermothrix orenii H 168]
          Length = 310

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 148/315 (46%), Gaps = 23/315 (7%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E L   +++ + L  ERG S LT++ YE D   F I+L      K    ++ +++   I 
Sbjct: 6   EYLNAVKSFKKYLATERGYSPLTVKEYERDLNLFYIYLTNEMGFKNDF-SLDKINKYHIA 64

Query: 73  AFISKRRTQKIGDRS---LKRSLSGIKSFLKYLKKR---KITTESNILNMRNLKKSNSLP 126
            F+    T  + D +     R L  I+SF K+L K    K+   + I   +   ++  + 
Sbjct: 65  EFLGD--TILVHDNAPTTRNRKLYSIRSFFKFLVKYEYIKVNPAATIEASKTEVRAEPIY 122

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             LN+ Q    ++ +  H     K    R+ AI+ L    GLR+SE + L   +I     
Sbjct: 123 MKLNDAQKY--IETIKKHGGVNLK----RDLAIVKLFLYAGLRVSELVGLDLDDIDFKDQ 176

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           +++  GKG K R VPL P V  +I  Y+    ++ P   N +    LF    GK ++   
Sbjct: 177 SIKFYGKGKKERYVPLHPDVIMSIKNYFPERNEIQP--KNEDAIKALFLSRHGKRISVRT 234

Query: 243 FQRYIRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            Q  +++  +  G+  +   T H LRH+FA+ L     DL+ +Q +LGH  +STTQIYT+
Sbjct: 235 IQMMVKKYAKLAGVKNADKITPHKLRHTFASLLYHKTKDLKILQDLLGHADISTTQIYTH 294

Query: 301 VNSKNGGDWMMEIYD 315
            + K     + E+ D
Sbjct: 295 TDVKQRKKAIKELPD 309


>gi|300872271|gb|ADK38963.1| IntI4 [Vibrio sp. V3(2010)]
          Length = 293

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 92/188 (48%), Gaps = 38/188 (20%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206
           +D ++   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V     L P +
Sbjct: 95  VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 154

Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233
           ++ I     YYD                        P++   +   P F+         +
Sbjct: 155 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 214

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH  + 
Sbjct: 215 RRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 274

Query: 294 TTQIYTNV 301
           TTQIYT+V
Sbjct: 275 TTQIYTHV 282


>gi|170754911|ref|YP_001781341.1| site-specific tyrosine recombinase XerC [Clostridium botulinum B1
           str. Okra]
 gi|169120123|gb|ACA43959.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum B1 str. Okra]
          Length = 326

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 151/302 (50%), Gaps = 27/302 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-------------EKITIQTIRQL 66
           ++L  L   +G S+ T++SY+ D   F  FL  Y               + I+ + I+ +
Sbjct: 19  DFLNYLRTIKGKSENTIESYKLDLIMFFRFLKLYKGMVPGEAEFNDIEIKDISDEDIKNI 78

Query: 67  SYTEIRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTESNILNMRNLKKSNS 124
           S T++ AF+S     +  G  +  R ++ +KSF ++L+ K KI  E+  L + + K S  
Sbjct: 79  SLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKIIKENPALELESPKISKR 138

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
            P        LTL ++  L +S + K+ + R+  I+ +   CGLR+SE   +   NI +D
Sbjct: 139 NP------VYLTLDESKRLLSSIDGKFKE-RDLCIVTMFLNCGLRLSELCGINISNIKND 191

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVF 243
              L + GKG+K R V L  +  K + +Y  +       +  +  LF       +N    
Sbjct: 192 --ILTVVGKGNKERTVYLNKACIKTLNDYLSVRKEMGEKIVDKDALFLSKNYTRINKRSV 249

Query: 244 QRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNV 301
           +  +++  +  GL     + H LRH+ AT +  +GG D+RS+Q ILGH  +STTQIYT+V
Sbjct: 250 EMLVKKYVKKAGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHV 309

Query: 302 NS 303
           +S
Sbjct: 310 DS 311


>gi|294669707|ref|ZP_06734774.1| hypothetical protein NEIELOOT_01608 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308620|gb|EFE49863.1| hypothetical protein NEIELOOT_01608 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 290

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 140/300 (46%), Gaps = 20/300 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L ++  LS  TL +Y  D  +  + LA   E+ ++       S      +    +T
Sbjct: 8   FLDHLWLQERLSANTLAAYRRDLNKIAVRLAGQGEDWLSADG----SGLAAVVYHPDEKT 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                RS  R+LS  K F  +L + +  +      +   K+   LP  ++E Q   L+  
Sbjct: 64  -----RSQARALSACKRFYGWLLETEQLSNDPTEYLTAPKQERILPAIVSESQIEMLLAA 118

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
               + H       R+ A+L L+Y  GLR+SEA+ LT   I   +  +   GKG K R+V
Sbjct: 119 PDTDSPH-----GLRDKALLELMYASGLRVSEAVKLTLGEIDLQRGLVVTVGKGGKQRLV 173

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+       I  Y       L  N +   LF G +   ++  +    + +     G+   
Sbjct: 174 PMGEEASYWIERYLAQARPVLLKNARCDELFVGQKRNGISRQLAWMIVDKYAEAAGIR-H 232

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + H+LRH+FATHL+++G DLR +QS+LGH  +STTQIYT+V ++     +  I  + HP
Sbjct: 233 LSPHSLRHAFATHLVNHGADLRVVQSLLGHADISTTQIYTHVANER----LKNIVSEHHP 288


>gi|258625491|ref|ZP_05720383.1| site-specific recombinase IntI [Vibrio mimicus VM603]
 gi|258582197|gb|EEW07054.1| site-specific recombinase IntI [Vibrio mimicus VM603]
          Length = 320

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 90/188 (47%), Gaps = 38/188 (20%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206
           +D +      LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V     L P +
Sbjct: 118 VDPKYQLPAKLLYGSGLRLMECIRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 177

Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233
           ++ I     YYD                        P++   +   P F+         +
Sbjct: 178 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDAM 237

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N  V QR +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH  + 
Sbjct: 238 RRHHMNETVLQRTVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 297

Query: 294 TTQIYTNV 301
           TTQIYT+V
Sbjct: 298 TTQIYTHV 305


>gi|329889983|ref|ZP_08268326.1| tyrosine recombinase xerD [Brevundimonas diminuta ATCC 11568]
 gi|328845284|gb|EGF94848.1| tyrosine recombinase xerD [Brevundimonas diminuta ATCC 11568]
          Length = 300

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 136/308 (44%), Gaps = 25/308 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ + +ER  S  TL +Y  D      +L         +  +       + A+ +  
Sbjct: 6   EAFLEMMAVERDASPHTLAAYGRDLADAQTWLN-------DVGGLMGAPQEALEAWFADL 58

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   +  R  + ++ F ++        +     +   K+  SLP+ L+  +    +
Sbjct: 59  SRRGLSAATAARRRASVRQFYRFALGEGWRADDPSRRLDAPKQGRSLPKTLSRDE----I 114

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           + +L            R   ++ + Y  GLR+SE L+L  + +  D + L ++GKG K R
Sbjct: 115 EALLTAAGAADSTAGLRLIVLVEMAYASGLRVSELLALKVEAVRRDPAYLIVRGKGGKER 174

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LF--RGIRGKPLNPGVFQRYIRQLRR 252
           + PL    R+AI  +  L   D       P    LF   G  G  L P  F + + Q   
Sbjct: 175 LAPLNMPAREAIKAW--LNARDAARKPNTPDSAWLFPSHGKSGH-LTPRRFAQLLDQAAV 231

Query: 253 YLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             G+ P   + H LRH+FATHLL  G DLR +Q++LGH  +STTQIYT+V      D + 
Sbjct: 232 MAGIDPARVSPHVLRHAFATHLLEGGADLRVVQTLLGHADISTTQIYTHVAV----DRLS 287

Query: 312 EIYDQTHP 319
           ++    HP
Sbjct: 288 QVVHANHP 295


>gi|212224162|ref|YP_002307398.1| integrase/recombinase [Thermococcus onnurineus NA1]
 gi|254799323|sp|B6YWN8|XERCL_THEON RecName: Full=Probable tyrosine recombinase xerC-like
 gi|212009119|gb|ACJ16501.1| integrase/recombinase [Thermococcus onnurineus NA1]
          Length = 282

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 120/233 (51%), Gaps = 18/233 (7%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F++K R +   ++SL   +  ++S+ ++        +     +R  K   SLP++L  ++
Sbjct: 50  FLAKLRREGYSNKSLNLVVQALRSYFRFE-----GYDEEAEKLRPPKVPKSLPKSLTREE 104

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG- 192
              ++ +V+  T         R+  I  LLYG GLR+SE  +L   ++  ++S + ++G 
Sbjct: 105 VRKIL-SVIPPTKK-------RDRLIFLLLYGAGLRVSELCNLKKSDVDFERSLIIVRGG 156

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R+VP+   + + I  Y  L   D +    +   R  R   L+P      +++   
Sbjct: 157 KGAKDRVVPIPAFLLEGIKAY--LETRDDDSEYLIVEDRRERKDKLSPKTVWYLLKKYGD 214

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             G+    T H LRHSFATH+L NG D+R+IQ +LGH  LSTTQIYT V  ++
Sbjct: 215 RAGI--RVTPHMLRHSFATHMLENGVDIRAIQELLGHSNLSTTQIYTKVTVEH 265


>gi|306842844|ref|ZP_07475484.1| site-specific tyrosine recombinase XerD [Brucella sp. BO2]
 gi|306287038|gb|EFM58549.1| site-specific tyrosine recombinase XerD [Brucella sp. BO2]
          Length = 247

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 110/241 (45%), Gaps = 32/241 (13%)

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q     S  R LS ++ F ++L       +     +   KK   LP+ ++ +    L+D
Sbjct: 3   AQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGKLLD 62

Query: 140 NVLLHTSHET---KWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
              L         + I A R  A+L  LY  GLR+SE + L       D   L ++GKG 
Sbjct: 63  RAALEADEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGS 122

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF-----------Q 244
           K R+VPL    R+A+ ++       L L   LP      G   NP +F           Q
Sbjct: 123 KDRMVPLSRKAREALQKF-------LTLRDSLP------GSDDNPWLFPAFSESGHLARQ 169

Query: 245 RYIRQLRRYLGLPLS----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            + R+L+             + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+
Sbjct: 170 VFARELKGLAARAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTH 229

Query: 301 V 301
           V
Sbjct: 230 V 230


>gi|238925026|ref|YP_002938542.1| integrase/recombinase-like protein [Eubacterium rectale ATCC 33656]
 gi|259710431|sp|C4ZGY6|XERC_EUBR3 RecName: Full=Tyrosine recombinase xerC
 gi|238876701|gb|ACR76408.1| integrase/recombinase-like protein [Eubacterium rectale ATCC 33656]
          Length = 306

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 146/307 (47%), Gaps = 23/307 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L+    ++ L + T+++Y  D  QF      Y E  I+I    +++  ++  +I K  
Sbjct: 10  SYLEYCLAQKRLDEKTIKAYRIDLIQF------YNE--ISISDPCKIASYDLEKYIEKMH 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALN----EKQA 134
             K   +S++R ++ IK+F  YL+ + I  ++    ++ + ++   LP+ +     EK  
Sbjct: 62  L-KYKPKSVRRKIASIKAFFHYLEYKNIILQNPFNKIQIHFREPVILPKTIPLYIVEKFL 120

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
            T+        ++  K    R++AI+ LL+  G+RISE  +L   ++      + I GKG
Sbjct: 121 FTIYKQRSAAKTNYQKRNALRDAAIVELLFSTGIRISELCNLKISDVNLIDGVILIYGKG 180

Query: 195 DKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
            K RI+ +  S    IL+ Y  D     +  N     F    GKPL+    +R I +   
Sbjct: 181 SKERILQIGNSSVLNILKEYKNDFYNEIVQCN---HFFSSQSGKPLSDQSVRRMINKYAS 237

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              + L  T H  RH+FAT LL    D+R IQ +LGH  ++ TQIYT+V      D ++ 
Sbjct: 238 LSSIDLHITPHMFRHTFATSLLEADVDIRYIQEMLGHSSINITQIYTHVAVSKQKDILI- 296

Query: 313 IYDQTHP 319
                HP
Sbjct: 297 ---NKHP 300


>gi|190571372|ref|YP_001975730.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|213018771|ref|ZP_03334579.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|190357644|emb|CAQ55088.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|212995722|gb|EEB56362.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 328

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 104/334 (31%), Positives = 162/334 (48%), Gaps = 39/334 (11%)

Query: 16  KERQNWLQNLEI---------ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           K+ QN  +NL I         E+  ++ TL+SY  D  Q   FL     E  T  T+   
Sbjct: 4   KQPQNKKENLYITYYIDALVSEKSSTQNTLESYRSDLHQLEKFLL----EGGT--TLVGA 57

Query: 67  SYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKIT----TESNILNMRNLKK 121
           S   I+ +++  RTQK     S+ R +S IK+F K L    I       +N   +RN K 
Sbjct: 58  SKANIKDYVNFLRTQKKYKTSSISRKISAIKNFYKCLFNDGIIDFNPAPANDNELRNPKV 117

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQN 180
           S  LP+ L+ ++   L++ V    S   K I + R  AIL +LY  G+R+SE +++    
Sbjct: 118 SRPLPKYLSVQEIFLLMETVKKSASGSNKEISSKRLCAILDILYSSGMRVSELINMKLCE 177

Query: 181 IMD------DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGI 233
           ++        +  + I+GK  + R +       +++  Y  +    L  N +   LF G 
Sbjct: 178 VLHLVNGNGKEGYIIIKGKSSRERQILFNEQALQSLKNYLSIRDNLLPNNKKSDWLFPG- 236

Query: 234 RGKPLNPGVFQRY---IRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGH 289
             KP  P   QR    I++L R   +  +  + H +RHS ATHLL++G ++  IQ ILGH
Sbjct: 237 -DKPNKPITRQRVGQLIKELARKCDIDENKISPHVIRHSLATHLLNSGANIVLIQKILGH 295

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
             LSTTQIYT++ ++   D + +    +HP ITQ
Sbjct: 296 TNLSTTQIYTHIANEKLKDKLAD----SHP-ITQ 324


>gi|299141119|ref|ZP_07034256.1| tyrosine recombinase XerD [Prevotella oris C735]
 gi|298577079|gb|EFI48948.1| tyrosine recombinase XerD [Prevotella oris C735]
          Length = 293

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 138/282 (48%), Gaps = 11/282 (3%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L  E   S+LT+++Y  D R F     F+ + K  + +   +    +R ++ +   
Sbjct: 6   FLDYLRFECNRSELTVKNYGDDLRSFE---KFFRDLKNPV-SWESVDLDVVRNWMERMMD 61

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     S+ R LS ++SF ++   RK+  +  +  +   KK   LP+ L EK+   L++ 
Sbjct: 62  EGNNAASINRRLSALRSFYRFALSRKLVDKDPVHGITGPKKGKPLPQFLKEKEMDRLLER 121

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                S E    D R+ AI+   Y  G+R+SE   L  + +   +  L++ GK +K RI+
Sbjct: 122 EYWTRSFE----DVRDRAIIMTFYETGIRLSELTGLDDKMVDFAEYQLKVTGKRNKQRII 177

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG-VFQRYIRQLRRYLGLPLS 259
           P    +   + +Y +    ++   +   LF    G+ ++   V +R  R L +   L   
Sbjct: 178 PFGEELCTTLRDYMESRDREVG-RLSEALFVTDEGQRMSASLVRERVKRSLSKVCTLK-K 235

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            + H LRH+FAT +L++   + S++ +LGH  LSTT+IYT+ 
Sbjct: 236 RSPHVLRHTFATAMLNHKAGIESVKKLLGHESLSTTEIYTHT 277


>gi|170761083|ref|YP_001787113.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A3
           str. Loch Maree]
 gi|169408072|gb|ACA56483.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 326

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 152/302 (50%), Gaps = 27/302 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY-------TE------EKITIQTIRQL 66
           ++L  L   +G S+ T++SY+ D   F  FL  Y       TE      + I+ + I+ +
Sbjct: 19  DFLNYLRTIKGKSENTIESYKLDLIMFFRFLKLYKGMVPGETEFNDIEIKDISDEDIKNI 78

Query: 67  SYTEIRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTESNILNMRNLKKSNS 124
           S T++ AF+S     +  G  +  R ++ +KSF ++L+ K KI  E+  L + + K S  
Sbjct: 79  SLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKIIKENPALELESPKISKR 138

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
            P        LTL ++  L +S + K+ + R+  I+ +   CGLR+SE   +   NI +D
Sbjct: 139 NP------VYLTLDESKRLLSSIDGKFKE-RDLCIVTMFLNCGLRLSELCGINISNIKND 191

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVF 243
              L + GKG+K R V L  +  K + +Y          +  +  LF       +N    
Sbjct: 192 --ILTVVGKGNKERTVYLNKACIKTLNDYLSARKEMGEKIVDKDALFLSKNYTRINKRSV 249

Query: 244 QRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNV 301
           +  +++  +  GL     + H LRH+ AT +  +GG D+RS+Q ILGH  +STTQIYT+V
Sbjct: 250 EMLVKKYVKKAGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHV 309

Query: 302 NS 303
           +S
Sbjct: 310 DS 311


>gi|313206990|ref|YP_004046167.1| integrase family protein [Riemerella anatipestifer DSM 15868]
 gi|312446306|gb|ADQ82661.1| integrase family protein [Riemerella anatipestifer DSM 15868]
          Length = 291

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 143/305 (46%), Gaps = 24/305 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + IE+  S  TL SY  D + F  F+    +E   + T+  +    IR F+   
Sbjct: 3   EKFLDYITIEKRYSLNTLASYSRDLQDFSDFV----KETEGVDTLISVDKKVIRNFVVYL 58

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALT 136
               +  R++ R LS ++SF  YL K  I + S +  + +LK      +P +  E + L 
Sbjct: 59  SENNLSKRTINRKLSALRSFYIYLVKLGIISASPMETVSSLKFYGEKQIPFSQKEMENLQ 118

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
                    +   +     N  I+ LLY  G+R SE   L  +++   Q+ +R+ GKG+K
Sbjct: 119 ---------NLLNEEKLLLNKLIIELLYQTGMRKSELCRLALKDVDFIQNRIRVVGKGNK 169

Query: 197 IRIVPLLPSVRKAILEYYDL--CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +R +P+  ++++ +  Y +    P   NL+     F    G+ L        +      +
Sbjct: 170 MREIPISENIKRELKLYLEKERKPTKENLDY---FFVRESGQKLTGKFVYSVVNDYLSAV 226

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
                 + H LRHSFATH+L NG ++  ++ ILGH  L++TQ+YT+ +     + + ++ 
Sbjct: 227 TSKKKKSPHVLRHSFATHVLENGAEIAQVKEILGHASLASTQVYTSTDV----NKLKKVL 282

Query: 315 DQTHP 319
           +  HP
Sbjct: 283 NSFHP 287


>gi|300872289|gb|ADK38972.1| IntI4 [Vibrio sp. V90(2010)]
          Length = 290

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 93/194 (47%), Gaps = 38/194 (19%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206
           +D ++   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V     L P +
Sbjct: 95  VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 154

Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233
           ++ I     YYD                        P++   +   P F+         +
Sbjct: 155 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 214

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N    Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q +LGH  + 
Sbjct: 215 RRHHMNETELQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQELLGHTDVK 274

Query: 294 TTQIYTNVNSKNGG 307
           TTQIYT+V  +   
Sbjct: 275 TTQIYTHVLDRGAA 288


>gi|255534753|ref|YP_003095124.1| Probable integrase [Flavobacteriaceae bacterium 3519-10]
 gi|255340949|gb|ACU07062.1| Probable integrase [Flavobacteriaceae bacterium 3519-10]
          Length = 356

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 136/304 (44%), Gaps = 48/304 (15%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           NLPE   F          Q   + +G S+ TL++Y  +  Q L  L  +         + 
Sbjct: 81  NLPEFKRF----------QEHLVLKGYSQSTLRTYSIEFAQLLYVLKGHP--------VN 122

Query: 65  QLSYTEIRA-FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           +LS   +RA F+      K+ +  +   ++ +K + + +  R         ++   KK  
Sbjct: 123 ELSPERLRAYFLYCHENLKLSESEIHSRINAVKFYFEQVLHR----HKMFFDIPRPKKKQ 178

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            LP+ L++ +   ++ +V           + ++  IL + YG GLR+SE ++L   +I  
Sbjct: 179 QLPKMLSKAEIKKIILSVE----------NPKHLMILKVCYGMGLRVSEVVALKLTDIDG 228

Query: 184 DQSTLRIQ---GKGDKIRIVP--LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
               +RI+   GK D+I ++P  LLP +R   L Y            +  LF G  G   
Sbjct: 229 AGKRVRIEQAKGKKDRITVLPESLLPELRAYYLAY----------RPKTFLFEGQHGGQY 278

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +    Q   ++     G+      H LRHSFATHLL  G D+R IQ +LGH  + TTQIY
Sbjct: 279 SVRSAQAVFKKAVEKAGIHRKLGIHGLRHSFATHLLETGTDIRFIQELLGHNSIKTTQIY 338

Query: 299 TNVN 302
           T+V 
Sbjct: 339 THVT 342


>gi|254819058|ref|ZP_05224059.1| site-specific tyrosine recombinase XerC [Mycobacterium
           intracellulare ATCC 13950]
          Length = 232

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 115/242 (47%), Gaps = 22/242 (9%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           +L R  S +K+F  +  +R +        ++  K   +LP  L + QAL  +       +
Sbjct: 2   TLARRTSAVKAFTAWAVRRGLLDTDPAARLQVPKAHRTLPAVLRQDQALDAL-AAAKSGA 60

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
            + + +  R+  I+ +LY  G+R+SE   L   ++      +R+ GKG+K R VP     
Sbjct: 61  QQGEPMALRDRLIVEMLYATGIRVSELCGLDIDDVDTRHRLVRVLGKGNKQRSVPFGAPA 120

Query: 207 RKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL--------GLP 257
            +A+  +  D  P  +N +    L  G RG+ ++       +RQ R  +        G P
Sbjct: 121 AEALDAWLADGRPALVNADSGPALLLGARGRRID-------VRQARTVVHQTVAAVDGAP 173

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V        +  ++DQ 
Sbjct: 174 -DMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSR----LRAVHDQA 228

Query: 318 HP 319
           HP
Sbjct: 229 HP 230


>gi|257458423|ref|ZP_05623565.1| tyrosine recombinase XerC [Treponema vincentii ATCC 35580]
 gi|257444227|gb|EEV19328.1| tyrosine recombinase XerC [Treponema vincentii ATCC 35580]
          Length = 304

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 137/305 (44%), Gaps = 32/305 (10%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R  S+ T+++Y  D + F  +LA   E ++      ++S  ++R F++    +     S+
Sbjct: 16  RHFSEKTIEAYRNDLKLFSAWLA---ENELPFT---EVSKVQVRIFVADLGNRHFAPASV 69

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R LS ++   +Y  ++ + T +    +RNLK+ + LPR L   +A    +         
Sbjct: 70  NRILSCVRGLYRYALQKGLCTTNPAALIRNLKQPDKLPRFLFPDEAERFCE---FPKEAG 126

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
             W  AR++A+   LY  G R +E   L   ++  +     ++GKG K R V      ++
Sbjct: 127 ILWY-ARDAALFSSLYSTGCRAAELQGLKITDLKGECRWAIVRGKGSKERKVFFADFAQE 185

Query: 209 AILEYYD-----LCPFDLNLNIQLP-----LFRGIRGKPLNPG----VFQRYIRQLRRYL 254
           A+  Y       +        ++ P     LF   RG  L       +  RY   L  Y 
Sbjct: 186 AVQRYLTERAELIAYLKEQDGLKTPVAEEALFLNCRGGALTTQGIRYIIDRYTALLPNYK 245

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            L    T H  RHSFA+  ++ G D+R +Q +LGH  ++TTQ YT++ +      + ++Y
Sbjct: 246 KL----TPHAFRHSFASMFITRGADIRVVQELLGHSNIATTQRYTHITAAQ----LQDLY 297

Query: 315 DQTHP 319
            + HP
Sbjct: 298 HKAHP 302


>gi|251771081|gb|EES51665.1| phage integrase family protein [Leptospirillum ferrodiazotrophum]
          Length = 324

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 110/226 (48%), Gaps = 12/226 (5%)

Query: 81  QKIGD---RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           ++ GD   RS  R LS ++++ ++L+   +  +      R    +  LPR+L +  +   
Sbjct: 65  ERRGDLSVRSRARFLSSVRAWTRFLELSGVRKDP-----RETPPAPRLPRSLPKILSQDE 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           V+  L+      +    R+ AIL   Y  GLR+SE  ++T   +      LR+ GKG K 
Sbjct: 120 VER-LIEAPDPHRPEGVRDRAILSFFYASGLRVSELATITADRVDLATGALRVMGKGAKE 178

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RI  L    R  + +Y  L         + P LF    G PL        I++  R  G+
Sbjct: 179 RIAFLDERTRHLLSDY--LTTVRPAFAREHPELFLARDGAPLTRQALWTLIKKHGRAAGI 236

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               + H LRHSFATHLL  G D+RSIQ +LGH  + TT+IYT+V+
Sbjct: 237 TSPLSPHVLRHSFATHLLEKGLDIRSIQLLLGHEDIRTTEIYTHVS 282


>gi|260642793|ref|ZP_05417338.2| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
 gi|260620552|gb|EEX43423.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
          Length = 368

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 84/150 (56%), Gaps = 7/150 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           ++  ++ L+Y  GLR SE L+LTPQ+I+ ++  +RI GKG K R   L   +   + +YY
Sbjct: 209 KHRCMISLIYSAGLRRSELLNLTPQDIISERMLIRIAGKGKKCRYSLLSEKLLNELRDYY 268

Query: 215 DLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                      Q  LF G + G+  +P    + +++  R  G+      H LRH+FATHL
Sbjct: 269 R------EYRPQKWLFEGEQAGEQYSPSALVKILKEAARKAGIKHRVHLHMLRHTFATHL 322

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           L  G DLR+IQ ++GH  + TT IY +V++
Sbjct: 323 LEQGTDLRTIQELMGHTDIKTTAIYLHVSN 352


>gi|255283924|ref|ZP_05348479.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469]
 gi|255265506|gb|EET58711.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469]
          Length = 305

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 150/312 (48%), Gaps = 29/312 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+  E  + L K T+++Y  D  Q+  F+      K  I+    +  TE+         
Sbjct: 10  YLEYCEYRKELDKNTIKAYRIDLCQYFTFICCDEPNKEKIE----VYITELH-------- 57

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLVD 139
           +K   +++KR ++ +K+F  YL++ +I + +    ++   K++ +LPR +  ++   L++
Sbjct: 58  KKYKQKTVKRKIASLKAFYNYLEEEEIISYNPFRKIKVKFKETITLPRIILREEIEKLLN 117

Query: 140 --------NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
                   NVL    ++      R+ A++ +L+  G R+ E  ++   ++  +   +RI 
Sbjct: 118 YMYDCLKKNVLTGYKYQL-----RDIAVVEVLFATGARVYEISNIREDSVNLNSGQIRIM 172

Query: 192 GKGDKIRIVPLLPSVRKAIL-EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           GKG K R V +  S   A+L +YY     ++  +     F   RG        +  +++ 
Sbjct: 173 GKGGKERYVQISNSSVLAVLRKYYKQNENEIKKS--GCFFINNRGNRYTEQSIRSMLKKY 230

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  G+  + T H  RHSFAT+L+  G D+  +Q I GH  + TTQIY ++ +K   + +
Sbjct: 231 AKQAGIARNITPHMFRHSFATYLIEEGVDVSCVQQIRGHSSIKTTQIYIHIAAKKQAEIL 290

Query: 311 MEIYDQTHPSIT 322
            E++ +   SI 
Sbjct: 291 REMHPRNSMSIA 302


>gi|86742264|ref|YP_482664.1| phage integrase [Frankia sp. CcI3]
 gi|86569126|gb|ABD12935.1| tyrosine recombinase XerC subunit [Frankia sp. CcI3]
          Length = 385

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/174 (39%), Positives = 96/174 (55%), Gaps = 11/174 (6%)

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL-LPSVRK 208
           + ++ R++ +L LLYG G+R+SE   L   +I DD+  LR+ GKG K R VP  +P+V  
Sbjct: 217 RAVELRDALVLELLYGSGIRVSELCGLDLGHIDDDRRLLRVLGKGGKERSVPFGVPAV-- 274

Query: 209 AILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTL 265
           A L  +     P  +       L  G+RG  L+P   +R +   R   G+ P   T H L
Sbjct: 275 AALRSWRSTGRPRLMTARSGRALLLGLRGGRLDPRTVRRIL-TTRVAAGVAPAGLTPHGL 333

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           RHS ATH+L  G DLRS+Q  LGH  L+TTQIYT+V  +     +   ++Q HP
Sbjct: 334 RHSAATHMLEGGADLRSVQEFLGHASLATTQIYTHVTPER----LRAAFEQAHP 383


>gi|56476505|ref|YP_158094.1| integrase/recombinase [Aromatoleum aromaticum EbN1]
 gi|58616507|ref|YP_195636.1| integrase [Azoarcus sp. EbN1]
 gi|56312548|emb|CAI07193.1| integrase/recombinase [Aromatoleum aromaticum EbN1]
 gi|56315969|emb|CAI10612.1| probable integrase [Aromatoleum aromaticum EbN1]
          Length = 309

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 138/300 (46%), Gaps = 33/300 (11%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           I SF +   RQ  L+++ + R L+  T  +Y      +  +     +E         L  
Sbjct: 13  IRSFAMTPLRQRMLEDMGV-RNLAPNTQSAYLKQVSAYARYFDCSPDE---------LGP 62

Query: 69  TEIRAF-ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
            ++RA+ +   +T+K+   ++  +   ++   K   KR    E   +  R+ K    LP 
Sbjct: 63  EQVRAYQVYLTQTRKLTPSTVSVATGALRFLYKVTLKRAWAVEEIPMPKRSFK----LPV 118

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L+ ++    + +V  H  H T         IL   Y  GLR+SEA  L   +I   +  
Sbjct: 119 VLSREEVSQFLASVD-HLMHRT---------ILMTAYAAGLRVSEATHLKVSDIDSQRMV 168

Query: 188 LRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQR 245
           LR+ QGKG K R V L P + +A+  Y+       +    L LF G + G+P+       
Sbjct: 169 LRVDQGKGRKDRYVMLSPRLLEALRVYWK------SARPTLWLFPGDVPGQPITRNAVGL 222

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             ++ RR  G+    T H+LRH+FATHLL +G D+R+IQ +LGH  L+TT  Y  V +  
Sbjct: 223 ACQKARRACGIRKPITPHSLRHAFATHLLESGTDVRTIQLLLGHRSLATTSRYLKVATST 282


>gi|59800775|ref|YP_207487.1| hypothetical protein NGO0329 [Neisseria gonorrhoeae FA 1090]
 gi|194098059|ref|YP_002001107.1| XerD [Neisseria gonorrhoeae NCCP11945]
 gi|239998519|ref|ZP_04718443.1| XerD [Neisseria gonorrhoeae 35/02]
 gi|240013644|ref|ZP_04720557.1| XerD [Neisseria gonorrhoeae DGI18]
 gi|240016083|ref|ZP_04722623.1| XerD [Neisseria gonorrhoeae FA6140]
 gi|240117462|ref|ZP_04731524.1| XerD [Neisseria gonorrhoeae PID1]
 gi|240120714|ref|ZP_04733676.1| XerD [Neisseria gonorrhoeae PID24-1]
 gi|240123018|ref|ZP_04735974.1| XerD [Neisseria gonorrhoeae PID332]
 gi|240125270|ref|ZP_04738156.1| XerD [Neisseria gonorrhoeae SK-92-679]
 gi|240127724|ref|ZP_04740385.1| XerD [Neisseria gonorrhoeae SK-93-1035]
 gi|268594379|ref|ZP_06128546.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 35/02]
 gi|268603162|ref|ZP_06137329.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID1]
 gi|268681643|ref|ZP_06148505.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID332]
 gi|268683870|ref|ZP_06150732.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-92-679]
 gi|268686113|ref|ZP_06152975.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-93-1035]
 gi|293399522|ref|ZP_06643675.1| tyrosine recombinase XerD [Neisseria gonorrhoeae F62]
 gi|59717670|gb|AAW89075.1| putative integrase/recombinase [Neisseria gonorrhoeae FA 1090]
 gi|193933349|gb|ACF29173.1| XerD [Neisseria gonorrhoeae NCCP11945]
 gi|268547768|gb|EEZ43186.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 35/02]
 gi|268587293|gb|EEZ51969.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID1]
 gi|268621927|gb|EEZ54327.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID332]
 gi|268624154|gb|EEZ56554.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-92-679]
 gi|268626397|gb|EEZ58797.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-93-1035]
 gi|291610091|gb|EFF39213.1| tyrosine recombinase XerD [Neisseria gonorrhoeae F62]
 gi|317163795|gb|ADV07336.1| hypothetical protein NGTW08_0364 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 291

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 137/281 (48%), Gaps = 16/281 (5%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L ++R LS+ TL SY  D  +    L+         +T++     ++ A +     Q
Sbjct: 10  LETLWLDRRLSRNTLDSYRRDLEKIARRLSLCG------RTLKDADEADLAAAVYVDGEQ 63

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
           +    S  R+LS  K    ++++  +  ++    ++  K   ++P  + E+Q   L+   
Sbjct: 64  R---SSQARALSACKRLYVWMEREGMRADNPTRLLKPPKIDRNIPTLITEQQISRLLAAP 120

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
              T H       R+ A+L L+Y  GLR+SEA+ L   N+  D+  +   GKGDK R+VP
Sbjct: 121 DTDTPH-----GLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITTLGKGDKQRMVP 175

Query: 202 LLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +       +  YY +  P  L       LF   +   ++  +    +++     G+    
Sbjct: 176 MGQESAYWVERYYTEARPLLLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIG-HI 234

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + H+LRH+FATHL+ +G DLR +Q +LGH  L+TTQIYT+V
Sbjct: 235 SPHSLRHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHV 275


>gi|291557723|emb|CBL34840.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a]
          Length = 357

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 156/347 (44%), Gaps = 51/347 (14%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAF----------YTEEKIT------IQTIR 64
           +L  L   +  S+LT  +Y  D R F+ FL            ++E KI+      I+ + 
Sbjct: 21  YLNYLTTIKNRSQLTALNYYTDLRMFMRFLKVKNKLVDANEDFSEIKISDLDDKYIKAVT 80

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNILNMRNLKKSN 123
                E  +F    R+ +   RS  R    ++ F K+L   K     S +LN+      N
Sbjct: 81  LTDAMEFLSFTVSERSNQAKARS--RKAVSLRQFYKFLTNNKAWFAASPMLNLELPSPKN 138

Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--TKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           +LP+ L  ++        LLH   +  + W+D R+ A++ +   CG+R+SE + +T  + 
Sbjct: 139 ALPKHLTLQEC-----GQLLHEGFKEFSSWMDYRDYAMIIMFLNCGMRLSELVGITVNDF 193

Query: 182 MD--DQS-------TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---- 228
           ++  D S       ++++ GKG+K RIV L      A+ +Y +        ++  P    
Sbjct: 194 VENIDPSQPCVKYLSVKVLGKGNKERIVYLNEQCVDAVTKYTEA-----RKSVADPKEKA 248

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           LF   RG  +     ++ I    +  GL     + H LRH+ AT +  NG D+R ++ +L
Sbjct: 249 LFISKRGNRITNRRVEQIIDDRLKACGLAGKGISVHKLRHTAATLMYQNGVDVRVLKEVL 308

Query: 288 GHFRLSTTQIYTNV------NSKNGGDWMMEIYDQTHPSITQKDKKN 328
           GH  L+TTQIYT+V      ++ N    M    D   P + Q + KN
Sbjct: 309 GHENLNTTQIYTHVVNTQLRDAINSNPVMDIKNDLPEPDLKQDEDKN 355


>gi|163753743|ref|ZP_02160866.1| tyrosine type site-specific recombinase [Kordia algicida OT-1]
 gi|161325957|gb|EDP97283.1| tyrosine type site-specific recombinase [Kordia algicida OT-1]
          Length = 428

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 142/294 (48%), Gaps = 32/294 (10%)

Query: 13  ELLKERQNWLQNLEIER----GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++L+E Q    N+ I++      S+ T++ Y+     F  +   Y  ++IT + IR    
Sbjct: 144 KVLREHQRDCPNIVIDKLKALRYSESTIKIYKSFLSIFFTYHYAYEPQEITNEMIR---- 199

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           T +R  + +R   +I +    + ++ IK + +    + +  +     +   K+S  LP  
Sbjct: 200 TYMRYLVQER---EISESYQNQMINAIKFYYE----KVLGGKQQTYFIDRPKRSKPLPIV 252

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L++K+ + L+ ++           + ++  IL ++Y CGLR+SE + L   +I  +++ +
Sbjct: 253 LSQKETIQLLKSIP----------NLKHKTILTVIYSCGLRVSELIDLKLSSIYLEENKI 302

Query: 189 RI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
            I  GKG K R V L      A+     +  +      +  L  G +G        Q++I
Sbjct: 303 HIVAGKGKKDRYVTL------AVRTKKLIKIYIKKYAPEHYLIEGQKGGKYATSSIQKFI 356

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           ++     GL  + T HTLRHSFATHLL  G  LR IQ ILGH    TT+IYT++
Sbjct: 357 KKYSNEAGLTKNVTPHTLRHSFATHLLEKGISLRYIQYILGHQNSKTTEIYTHI 410


>gi|307720464|ref|YP_003891604.1| integrase family protein [Sulfurimonas autotrophica DSM 16294]
 gi|306978557|gb|ADN08592.1| integrase family protein [Sulfurimonas autotrophica DSM 16294]
          Length = 278

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 150/304 (49%), Gaps = 38/304 (12%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K ++ +L +LE  RG S+LT+++Y     +   ++    E+  T+      +    R +I
Sbjct: 7   KYKKEFLVSLEEYRGYSELTVKTYADVLGEAFQYIEIVQEDGHTV-----FNLMPYRIYI 61

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +      +  +++ + LS I+SF+++L ++ +     +    ++K + +LP+ ++    L
Sbjct: 62  AG-----LNAKTISKKLSAIRSFVEFLNEQGLHVA--LQADESIKVAKTLPKPVSHAHIL 114

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
             +              D +   +  +LY  GLRISE  SL   NI ++   +R+ GKG+
Sbjct: 115 EALSQS-----------DLQEKLLAVMLYTLGLRISELASLELHNITNEW--IRVIGKGN 161

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R +PLL + R  I EY  L  F     ++  LF    G+ L+    +  I ++ + + 
Sbjct: 162 KQRDIPLLGTTRALIDEY--LSTFV----VKKFLFEK-NGERLSENSLRYMITKIFKRVA 214

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L +  T H LRHS+A+ LL+ G  +  +  +LGH  ++TTQIYT    K G     + Y+
Sbjct: 215 LKV--TPHQLRHSYASSLLNGGAPIVDVSELLGHSSMATTQIYT----KLGSALKQQNYN 268

Query: 316 QTHP 319
           + HP
Sbjct: 269 KAHP 272


>gi|269126616|ref|YP_003299986.1| integrase family protein [Thermomonospora curvata DSM 43183]
 gi|268311574|gb|ACY97948.1| integrase family protein [Thermomonospora curvata DSM 43183]
          Length = 338

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 105/232 (45%), Gaps = 26/232 (11%)

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R +S ++ +  +L +    T     ++   +    LP AL + Q   +V       +  T
Sbjct: 90  RRISALRGWCAWLVRTGHLTADPTTDLETPRLPRRLPVALTDAQLAAIVQ------AAST 143

Query: 150 KWIDAR------NSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIV 200
            W  AR      + A+L L  G G R  E ++L   +++   D    LR++GKG   R V
Sbjct: 144 PWQGARAQWVRLDRALLALFAGAGARTGEVVALRVGDVICEEDGGGLLRLRGKGGAHRNV 203

Query: 201 PLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           PL     + + +Y D     L PFD     + PL     GK +  G+ +  + Q  R   
Sbjct: 204 PLHADAMQPVTDYLDERRALLGPFD----AEDPLLVARNGKAITTGMIEYRVDQWFRRAA 259

Query: 256 L--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +  P    AH  RH++A  +L NG  L  +Q++LGH  L+TT IYT V ++ 
Sbjct: 260 VRRPEGELAHVFRHTYAVGVLQNGASLNELQAVLGHQNLATTSIYTKVAAEG 311


>gi|300872279|gb|ADK38967.1| IntI4 [Vibrio sp. V49(2010)]
          Length = 297

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 95/201 (47%), Gaps = 38/201 (18%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210
           +D ++   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V L   + + +
Sbjct: 95  VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYQHL 154

Query: 211 LE-------YYDL----------------------CPFDLNLNIQLPLFR--------GI 233
            E       YYD                        P++   +   P F+         +
Sbjct: 155 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 214

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH  + 
Sbjct: 215 RRHHINETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 274

Query: 294 TTQIYTNVNSKNGGDWMMEIY 314
           TTQIYT+V  +     +  IY
Sbjct: 275 TTQIYTHVLDRWCSSIIKPIY 295


>gi|254418058|ref|ZP_05031782.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
 gi|196184235|gb|EDX79211.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
          Length = 306

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 91/174 (52%), Gaps = 18/174 (10%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           A++ + Y  GLR+SE L L    +  D + L ++GKG K R+ PL  + R+AI  +  L 
Sbjct: 134 ALVEMAYASGLRVSELLGLKVDAVRRDPAYLIVRGKGGKERLAPLNTAAREAIKAW--LT 191

Query: 218 PFDLNLN------IQLP----LFRGI-RGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTL 265
             D  L        + P    LF    R   L P  F + + +     G+ P   + H L
Sbjct: 192 ARDARLKGKDGRKPEAPDSPWLFPSSGRTGHLTPRRFAQLLDEAAPVAGIDPARVSPHVL 251

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           RH+FATHLL  G DLR +Q++LGH  ++TTQIYT+V +    D + ++  Q HP
Sbjct: 252 RHAFATHLLEGGADLRVVQTLLGHADIATTQIYTHVAT----DRLAQVVQQNHP 301


>gi|23452624|gb|AAN33109.1| VvuIntIA [Vibrio vulnificus]
          Length = 320

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 140/319 (43%), Gaps = 63/319 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           R  +  T+Q+Y    +Q++IF       K+   +   L+ T +  F+S     QK+  ++
Sbjct: 16  RHYASKTIQAYISWIKQYIIF------HKMAHPST--LNETHVEEFLSYLALEQKVAAKT 67

Query: 88  LKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
              +L+ I   + +Y +    T  SN +  +       LP  L + +  +L+ +      
Sbjct: 68  QALALNSIMFLYREYFR----TPLSNEIKFQKSLLDRKLPVVLTKSELRSLIQH------ 117

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----- 200
                ID R    + LLYG GLR+ E + L  Q+I      LRI QGKG K R V     
Sbjct: 118 -----IDPRYKLHIMLLYGSGLRVMECVRLRVQDIDYHYGALRIWQGKGGKNRTVTLAKE 172

Query: 201 --PLLPSVRKAILEYY--DL--------------------CPFDLNLNIQLPLFRG---- 232
             P+L    +  L YY  D+                       D N +   P  +     
Sbjct: 173 LFPMLKQQEELALRYYQKDINTPGYSGVWLTHSLQRKYRGAEMDFNWHYLFPSEKLSIDP 232

Query: 233 ----IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
               +R   +N    QR +++  +  G+  + T HTLRHSFATHLL +G D+R++Q  LG
Sbjct: 233 ESNLLRRHHINEQSLQRAVKRAAKDAGIEKTVTCHTLRHSFATHLLESGADIRTVQEQLG 292

Query: 289 HFRLSTTQIYTNVNSKNGG 307
           H  + TTQIYT+V  +  G
Sbjct: 293 HSDVKTTQIYTHVLERGAG 311


>gi|47094600|ref|ZP_00232245.1| integrase/recombinase XerC [Listeria monocytogenes str. 4b H7858]
 gi|47017024|gb|EAL07912.1| integrase/recombinase XerC [Listeria monocytogenes str. 4b H7858]
          Length = 241

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 16/238 (6%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++ R +S ++SF  +L +  +  E+    + + K    LP+    ++   L   V     
Sbjct: 13  TVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEMEALFQVVY---- 68

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
            + + +  R+  +L +LYG G+R+SE   +   ++      + I+GKG+K R VP     
Sbjct: 69  EDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKERYVPFGVYA 128

Query: 207 RKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
             AI +Y    P   NL  +       L     G PL     +  + ++     L     
Sbjct: 129 EDAITDY---LPERANLMSRYKKSHDALLVNHYGDPLTTRGIRYCLSKIISKASLTRKIH 185

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            H LRH+FAT LL+NG D+R++Q +LGH  LS+TQIYT+V  ++    +   Y + HP
Sbjct: 186 PHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----LKSTYMKHHP 239


>gi|326387724|ref|ZP_08209330.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207770|gb|EGD58581.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 300

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 137/303 (45%), Gaps = 29/303 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECD---TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +L  L  ERG +  TL +Y  D     Q L  LA      +           E+ A ++ 
Sbjct: 14  FLAMLSAERGAAANTLAAYRRDLAGAAQVLGDLALADRGALA-------RLGEVWADLAP 66

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    SL R  S ++ F  +L +  +  +     +  ++    LPR L+  +   L
Sbjct: 67  A--------SLARKASALRQFYAFLVEEGLREDDPGDALPRVRARRPLPRLLDHGEIGAL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
             ++    + E      R  A++ LLYG GLR +E +SL    +  D   L I GKG + 
Sbjct: 119 F-SLAEADAAEGDPAALRLLALVELLYGSGLRATELVSLPLVAVPRDAPFLAITGKGGQQ 177

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL- 256
           R+VP+      A+ ++  + P          +F   RG  L      + +R L    GL 
Sbjct: 178 RLVPVGERAGAALRDWLRVRPAGGRY-----VFPSPRGGHLTRVRLFQLLRDLALRAGLD 232

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           P   + H LRH+FATHLL  G DLR +Q++LGH  ++TTQIYT+V+    G  ++ + +Q
Sbjct: 233 PEKVSPHVLRHAFATHLLEGGADLRVLQTLLGHADIATTQIYTHVD----GARLVSLVNQ 288

Query: 317 THP 319
            HP
Sbjct: 289 RHP 291


>gi|300872267|gb|ADK38961.1| IntI4 [Vibrio sp. V1(2010)]
          Length = 293

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 92/188 (48%), Gaps = 38/188 (20%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206
           +D ++   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V     L P +
Sbjct: 95  VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 154

Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233
           ++ I     YYD                        P++   +   P F+         +
Sbjct: 155 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 214

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N  V Q+ +++  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH  + 
Sbjct: 215 RRHHMNETVLQKAVKRAAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 274

Query: 294 TTQIYTNV 301
           TTQIYT+V
Sbjct: 275 TTQIYTHV 282


>gi|188585653|ref|YP_001917198.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350340|gb|ACB84610.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 283

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 98/191 (51%), Gaps = 24/191 (12%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           KK   LP  L++K+ L L+          T   + ++ AIL ++Y  GLR+ EA+ L P+
Sbjct: 97  KKERKLPNVLSQKEVLELL----------TVTTNIKHKAILCIIYSSGLRVGEAVRLKPE 146

Query: 180 NIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRG 235
           ++  +Q  + I QGKG K R   L  +  K +  YY          I  P   LF G   
Sbjct: 147 DLDGEQKIIHIKQGKGRKDRYTILSDNALKILRNYYK---------IYQPKKWLFPGQNE 197

Query: 236 K-PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              L+    Q+  ++ ++   +    + H+LRHSFATHLL  G DLR IQ +LGH    T
Sbjct: 198 NLHLSERSVQKIFQKAKQKANINKKVSVHSLRHSFATHLLEAGTDLRYIQKLLGHESSKT 257

Query: 295 TQIYTNVNSKN 305
           T+IYT++ ++N
Sbjct: 258 TEIYTHITTQN 268


>gi|312622379|ref|YP_004023992.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202846|gb|ADQ46173.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 328

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 145/295 (49%), Gaps = 37/295 (12%)

Query: 35  TLQSYECDTRQFLIFLA------FYTEEKIT-----------IQTIRQLSYTEIRAFISK 77
           T++ Y  D R FL +L           EKI            I+ ++ L+ + +  + S 
Sbjct: 27  TIKEYYYDLRNFLRYLKAKDLNMLSQIEKIEDLENIDVSNFEIEKLKALTLSNLYEYFSF 86

Query: 78  RRTQ-KIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRAL---NEK 132
             T    G  +  R ++ I+SF KYL  K K+  ++   ++ + K     PR L     K
Sbjct: 87  LATHFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYLTLDESK 146

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + L+ +D        E K    R+ AI+ +   CGLR+SE +++   +I DD   LRI G
Sbjct: 147 KLLSAIDG-------ENK---ERDFAIITIFLNCGLRLSELVNINLSDIKDDM--LRIVG 194

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG+K RI+ L  + + AI  Y  + P +  +  +  LF   R K ++    Q  + +  +
Sbjct: 195 KGNKERIIYLNKACKDAIENYLKVRPTE-GVKDKDALFLSERKKRISRRTVQYIVEKYVK 253

Query: 253 YLGL-PLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSKN 305
             G+     +AH LRH+ AT +  +G  D+RS+Q+ILGH  +STT+IYT+VN  +
Sbjct: 254 MAGINQKKISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDD 308


>gi|319899487|ref|YP_004159584.1| integrase/recombinase XerD [Bartonella clarridgeiae 73]
 gi|319403455|emb|CBI77026.1| integrase/recombinase XerD [Bartonella clarridgeiae 73]
          Length = 312

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 153/314 (48%), Gaps = 26/314 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY--TEIRAFISKR 78
           +L+ +  ERG S  TL +Y+ D +        + + K++  ++   S    ++   +S  
Sbjct: 10  FLEMMSAERGASVRTLFAYQHDLQ--------WAQNKLSSYSLSFFSAQREDLINLLSLM 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +T      S  R LS ++ F ++L    +  +    ++ + ++   LP+ ++E     L+
Sbjct: 62  QTAGCAATSQARRLSTLRQFFQFLYAEGLRGDDPSSDIDSPRQGRPLPKIISEDAVTKLL 121

Query: 139 DNVLLHTSH----ETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           D   L T        ++  A R   +L +LY  GLRISE +SL  Q +   +  + ++GK
Sbjct: 122 DFAQLETDQAEYGSQEYFRALRFQVLLEMLYATGLRISELVSLPVQAVRRKEQFILVRGK 181

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLF--RGIRGKPLNPGVFQRYIRQL 250
           G+K R+V L    R+ + ++  L   D   + +   LF  R   G      V  R ++ L
Sbjct: 182 GEKERVVLLSEKARQILSKW--LVLRDQGKDAKSFYLFPARSSTGYIARQFV-ARGLKDL 238

Query: 251 RRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            +  G+     + H LRH+FA+HLL NG DLR++Q +LGH  +STTQ+YT+V        
Sbjct: 239 AKRAGIQSENFSPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQVYTHVLEAR---- 294

Query: 310 MMEIYDQTHPSITQ 323
           +  + ++ HP + Q
Sbjct: 295 LHRLVNEHHPLVDQ 308


>gi|309781409|ref|ZP_07676145.1| tyrosine recombinase XerD [Ralstonia sp. 5_7_47FAA]
 gi|308919822|gb|EFP65483.1| tyrosine recombinase XerD [Ralstonia sp. 5_7_47FAA]
          Length = 311

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 147/304 (48%), Gaps = 20/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +   L +E GL++ TL +Y  D    L   A +  E+   ++I +    ++  + + R
Sbjct: 23  QRFCDALWLEDGLARNTLDAYRRD----LTLYAHWLAERN--KSIAETEDDDLADYFAAR 76

Query: 79  RTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             +     S  R  +  K F ++ L++  ++T+ + L +   K+    P+ L+E Q   L
Sbjct: 77  HAESRAS-SANRRRTVFKRFFQWALREHVVSTDPSRL-LPTAKQPPRFPKTLSETQVEAL 134

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDK 196
           +D   + T      +  R+ A++ L+Y  GLR+SE ++L    + +++     + GKG K
Sbjct: 135 IDAPDVDTP-----LGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEGVVRVVGGKGGK 189

Query: 197 IRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R+VP        +  Y  D     L       LF   RG+ +    F   I++      
Sbjct: 190 DRLVPFGAEAGDWLRRYLRDGRTALLGERTADALFVTARGEGMTRQAFWYLIKRYALLAD 249

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++ 
Sbjct: 250 IHAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARER----LRTLHA 305

Query: 316 QTHP 319
           Q HP
Sbjct: 306 QHHP 309


>gi|302387936|ref|YP_003823758.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302198564|gb|ADL06135.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 295

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 141/293 (48%), Gaps = 23/293 (7%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           SK T  SY+ D  Q   FL     E+  I+ + +++ T + ++I     +     ++ R 
Sbjct: 19  SKNTEVSYQRDLMQLASFL-----EQQGIREVDKVTKTSLTSYILHLEKEGKATTTISRC 73

Query: 92  LSGIKSFLKY-LKKRKITTE-SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           L+ +K+F  +  K+ +I  + + +L    ++K       ++E      V+++L     ET
Sbjct: 74  LASMKAFFHFECKEGRIQKDPAELLKAPKVEKKAPTILTVDE------VNSLLSQPGGET 127

Query: 150 KWIDARNSAILYLLYGCGLRISEALSL--TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
              + R+ A+L LLY  G+R+SE + L  T  N+     T R +    K R+VP     +
Sbjct: 128 PK-ELRDRAMLELLYATGIRVSELIHLKKTDVNLSIGYITCRDE---HKERMVPFGKVAK 183

Query: 208 KAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            A+  Y +        + + P LF    GK ++   F + I+      G+    T HTLR
Sbjct: 184 LALSAYMERGRVYFLRDQESPWLFTNCNGKSMSRQGFWKIIKFYGDKAGIKADITPHTLR 243

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HSFA HLL NG D+ ++Q++LGH  ++TTQ+Y N      G+ +   Y   HP
Sbjct: 244 HSFAAHLLRNGADIHAVQAMLGHSDMATTQMYMNYTQ---GEDLRRSYTGAHP 293


>gi|301162387|emb|CBW21932.1| putative tyrosine recombinase [Bacteroides fragilis 638R]
          Length = 308

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 84/150 (56%), Gaps = 7/150 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           ++  ++ L+Y  GLR SE L+LTPQ+I+ ++  +RI GKG K R   L   +   + +YY
Sbjct: 149 KHRCMISLIYSAGLRRSELLNLTPQDIISERMLIRIAGKGKKCRYSLLSEKLLNELRDYY 208

Query: 215 DLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                      Q  LF G + G+  +P    + +++  R  G+      H LRH+FATHL
Sbjct: 209 R------EYRPQKWLFEGEQAGEQYSPSALVKILKEAARKAGIKHRVHLHMLRHTFATHL 262

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           L  G DLR+IQ ++GH  + TT IY +V++
Sbjct: 263 LEQGTDLRTIQELMGHTDIKTTAIYLHVSN 292


>gi|307269737|ref|ZP_07551067.1| phage integrase, SAM-like domain protein [Enterococcus faecalis
           TX4248]
 gi|306513847|gb|EFM82449.1| phage integrase, SAM-like domain protein [Enterococcus faecalis
           TX4248]
          Length = 301

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 143/294 (48%), Gaps = 34/294 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RG SK+T+++Y+   R    F      E +      QL    I+++I   + +++   ++
Sbjct: 17  RGFSKITIKNYKSKLRNTANFFKSINVEPL------QLEKKHIKSWIIDMQEKEMQASTI 70

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE---KQALTLVDNVLLHT 145
             S+S +K    Y+   K    +  +++  LK+   +   LN+   KQ LT+        
Sbjct: 71  NVSVSRLKKLFDYMLIEKYIDYNPFVDIERLKEQRKVIYPLNDYEIKQMLTVA------K 124

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
            H  K I  RN  IL L+  CGLRISE   +  ++IM++Q  +R + K +K R V + P 
Sbjct: 125 KHPYKHIAQRNVVILMLMIECGLRISEVCEIRDEDIMNNQIIIR-KSKNNKDRAVAVSPI 183

Query: 206 VRKAILEY-------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-- 256
           ++K I++Y       Y L   +L +   L       GK LN     + ++++++ + +  
Sbjct: 184 LKKEIIKYQRIKKRKYGLLEGNLFIVSNL-------GKKLNEKSIWQIMQEIKKQIDIRD 236

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  + HTLRH++A+  L NG D+ ++   +GH  +  TQ Y  V + N  D++
Sbjct: 237 CVRFSGHTLRHTYASMQLRNGLDIYTLSLNMGHSSIEMTQRY--VQTLNSEDFI 288


>gi|332185243|ref|ZP_08386992.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas
           sp. S17]
 gi|332014967|gb|EGI57023.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas
           sp. S17]
          Length = 299

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 121/238 (50%), Gaps = 14/238 (5%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--LLH 144
           ++ R  + ++ F  +L +  +  +     +    +  SLP+ L+      L   +   + 
Sbjct: 66  TVARKAAALRRFYAFLHEEGLRVDDPASALPRPGQRRSLPKVLSHADIDRLFAAIGERIG 125

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            +H     D R +A++ LLYG GLR SE ++L    I  D+  L ++GKG   R+VP+  
Sbjct: 126 VAHPAP-NDLRLAALIELLYGSGLRASELVALPRNAIHPDRPFLILRGKGGAERMVPISD 184

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS-TTAH 263
             R A+  +    P D     +  LF G + + L+     + ++ L    G+P    + H
Sbjct: 185 RARAAVAAWRVHVPTD-----KAWLFPGGK-RHLSRIRLYQLVKALAAEAGIPPDRVSPH 238

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            LRH+FATHLL  G DLR++Q++LGH  ++TT+IYT+V +      ++E+ +  HP +
Sbjct: 239 VLRHAFATHLLGGGADLRAVQAMLGHADIATTEIYTHVEATQ----LVELVNARHPLV 292


>gi|225028233|ref|ZP_03717425.1| hypothetical protein EUBHAL_02505 [Eubacterium hallii DSM 3353]
 gi|224954412|gb|EEG35621.1| hypothetical protein EUBHAL_02505 [Eubacterium hallii DSM 3353]
          Length = 303

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 144/310 (46%), Gaps = 36/310 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+  E  + L   TL++Y  D RQF+ F+      K  I+  R ++Y            
Sbjct: 10  YLEYCEYRKELDWNTLKAYRIDLRQFVEFIEGEEPSKEKIE--RYITYLH---------- 57

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLVD 139
           +K   +++KR ++ +K F  YL++ +I  E+ +  +    K+   LPR +  ++   L++
Sbjct: 58  KKYKQKTVKRKIASLKVFYAYLEEEEIIEENPMRRVHTKFKEERVLPRIIPREEIEKLLN 117

Query: 140 NVL--LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            +   L  S + +    R+ A++ + +  G R+ E  ++  +NI  +   +R  GKG K 
Sbjct: 118 CMYKELRESEKNQRFILRDVAVVEVFFATGARVYEIANIRIENINLESGVIRFMGKGGKE 177

Query: 198 RIVPL-LPSVRKAILEYY-------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           RIV +   SV + +  YY         C +          F   R         +  +++
Sbjct: 178 RIVQIGEESVIELLNRYYTENKEEIHACGY---------FFINKRKSRFTEQSIRLMLKK 228

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +   +  + T H  RHSFAT+L+  G D+  +Q ILGH  + TTQIY +V+S+   D 
Sbjct: 229 YTKQAKIERNITPHMFRHSFATYLIEEGVDISCVQQILGHSSIKTTQIYIHVSSQKQADI 288

Query: 310 MMEIYDQTHP 319
           + E+    HP
Sbjct: 289 LREM----HP 294


>gi|182420240|ref|ZP_02951470.1| tyrosine recombinase [Clostridium butyricum 5521]
 gi|237666087|ref|ZP_04526075.1| tyrosine recombinase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182375938|gb|EDT73529.1| tyrosine recombinase [Clostridium butyricum 5521]
 gi|237659034|gb|EEP56586.1| tyrosine recombinase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 323

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 144/301 (47%), Gaps = 27/301 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFL-----------AFYTEE--KITIQTIRQL 66
           N+L  +   +G SK TL  Y  D   F  FL            F   E   I  + IR +
Sbjct: 15  NYLSYMSSIKGSSKKTLHVYTTDLILFFRFLKRDRNLVNIDIPFEEIEIYDINKEFIRSI 74

Query: 67  SYTEIRAFISKRRTQKI-GDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKKSNS 124
             ++I +F+S    ++   + + +R ++ +KSF ++L  +    ++++  N+   K    
Sbjct: 75  DSSDIYSFLSYTEFERNNSNVTRRRKIACLKSFFRFLYLKLHMIDTDLCENLERPKAKPK 134

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L E + ++L++N+       T     R+  I+ L    GLR+SE  S+   +I DD
Sbjct: 135 LPVYLKENECVSLLNNI-------TGRNIVRDRCIITLFINTGLRLSELCSINISSIKDD 187

Query: 185 QSTLRIQGKGDKIRIVPLLPSVR---KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
             TL + GKG+K R + L  S     +  L Y       +    +  LF   + + +NP 
Sbjct: 188 --TLVVLGKGNKERYIYLNESCLSQLEVYLRYRSEKYIPIKEGHEDALFLSEQKQRINPR 245

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             +  + +  +   L    +AH LRH+ AT L   G D+RSIQ++LGH  ++TTQIYT+V
Sbjct: 246 SVENIVVKAVKSACLDKHYSAHKLRHTCATLLYKAGADIRSIQTLLGHESVATTQIYTHV 305

Query: 302 N 302
           +
Sbjct: 306 D 306


>gi|305666658|ref|YP_003862945.1| tyrosine type site-specific recombinase [Maribacter sp. HTCC2170]
 gi|88707463|gb|EAQ99707.1| tyrosine type site-specific recombinase [Maribacter sp. HTCC2170]
          Length = 363

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 134/276 (48%), Gaps = 23/276 (8%)

Query: 28  ERGLSKLTLQSYECDT-RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           E  L KL L+ Y   T R ++ F   +       + +  ++ ++IRAF+ K   + + + 
Sbjct: 96  EEYLLKLELKRYANSTVRTYVSFFELFINH-YKYKELNAINESDIRAFLQKLIHRNVSNS 154

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
            L +S++ IK + + +    +   +    +   +K + LP+ +++ + LT+++N      
Sbjct: 155 YLNQSINAIKFYYEVV----LGMPNRFYEIERPRKESKLPKVISKDEILTIIENT----- 205

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205
                 + ++  I+ LLYG GLR SE L+L   ++   +  + +   KG+K R   L   
Sbjct: 206 -----NNIKHRCIVQLLYGSGLRRSELLNLKINDVDSKRMLIHVSDSKGNKDRQTLL--- 257

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
             K  L  +DL  +      Q+ LF G  GK  +       ++       + +  T H L
Sbjct: 258 -SKTCL--HDLRLYFTKYRPQVYLFEGRYGKKYSGESVLSIVKSAAERARIRVRVTPHVL 314

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           RHSFATHLL +G DLR IQ +LGH    TT+IYT+V
Sbjct: 315 RHSFATHLLESGTDLRHIQVLLGHGSTKTTEIYTHV 350


>gi|240080225|ref|ZP_04724768.1| XerD [Neisseria gonorrhoeae FA19]
 gi|240112438|ref|ZP_04726928.1| XerD [Neisseria gonorrhoeae MS11]
 gi|240115178|ref|ZP_04729240.1| XerD [Neisseria gonorrhoeae PID18]
 gi|254493240|ref|ZP_05106411.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 1291]
 gi|260441004|ref|ZP_05794820.1| XerD [Neisseria gonorrhoeae DGI2]
 gi|268596375|ref|ZP_06130542.1| tyrosine recombinase xerD [Neisseria gonorrhoeae FA19]
 gi|268598504|ref|ZP_06132671.1| tyrosine recombinase xerD [Neisseria gonorrhoeae MS11]
 gi|268600856|ref|ZP_06135023.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID18]
 gi|291044335|ref|ZP_06570044.1| tyrosine recombinase xerD [Neisseria gonorrhoeae DGI2]
 gi|226512280|gb|EEH61625.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 1291]
 gi|268550163|gb|EEZ45182.1| tyrosine recombinase xerD [Neisseria gonorrhoeae FA19]
 gi|268582635|gb|EEZ47311.1| tyrosine recombinase xerD [Neisseria gonorrhoeae MS11]
 gi|268584987|gb|EEZ49663.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID18]
 gi|291011229|gb|EFE03225.1| tyrosine recombinase xerD [Neisseria gonorrhoeae DGI2]
          Length = 291

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 137/281 (48%), Gaps = 16/281 (5%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L ++R LS+ TL SY  D  +    L+         +T++     ++ A +     Q
Sbjct: 10  LETLWLDRRLSRNTLDSYRRDLEKIARRLSLCG------RTLKDADEADLAAAVYVDGEQ 63

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
           +    S  R+LS  K    ++++  +  ++    ++  K   ++P  + E+Q   L+   
Sbjct: 64  R---GSQARALSACKRLYVWMEREGMRADNPTRLLKPPKIDRNIPTLITEQQISRLLAAP 120

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
              T H       R+ A+L L+Y  GLR+SEA+ L   N+  D+  +   GKGDK R+VP
Sbjct: 121 DTDTPH-----GLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITTLGKGDKQRMVP 175

Query: 202 LLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +       +  YY +  P  L       LF   +   ++  +    +++     G+    
Sbjct: 176 MGQESAYWVERYYTEARPLLLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIG-HI 234

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + H+LRH+FATHL+ +G DLR +Q +LGH  L+TTQIYT+V
Sbjct: 235 SPHSLRHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHV 275


>gi|253991592|ref|YP_003042948.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211638470|emb|CAR67092.1| tyrosine recombinase xerc [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253783042|emb|CAQ86207.1| tyrosine recombinase xerc [Photorhabdus asymbiotica]
          Length = 303

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 88/312 (28%), Positives = 155/312 (49%), Gaps = 29/312 (9%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ---LSYTE 70
           LL+  + +L+ L +ER LS +T+ +Y    R+ L  LA    E +    +RQ   L   +
Sbjct: 8   LLEPIEAFLRYLRVERRLSPVTIINY----RRHLSALA----EMVLAIDVRQWEDLDPAK 59

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +R  + + R   +   +L   LS ++SFL +   + +   +    +        LP+ ++
Sbjct: 60  VRMLVIRSRRAGLQSANLSLRLSSLRSFLDWQVTQGVMAVNPGKAVSTPGTKRHLPKNID 119

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             +      N LL+ +     +  R+  +L ++YG GLR+SE + L  +++  +   + +
Sbjct: 120 VDEV-----NQLLNINFNEP-LSVRDRTMLEVMYGAGLRLSELVGLDCRHLDLESGEVWV 173

Query: 191 QGKGDKIRIVPLLPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
            GKG K R VPL  +  + +   LE  +L     N      +F   RG+ ++    Q+  
Sbjct: 174 SGKGSKERKVPLGQTAVEWLNRWLEMRELFKPGDN-----AVFISNRGRRISTRNVQQRF 228

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            Q     G+      H LRHSFATH+L + GDLR++Q +LGH  LSTTQ+YT+++ ++  
Sbjct: 229 AQWGIRQGINSHIHPHKLRHSFATHILESSGDLRAVQELLGHASLSTTQVYTHLDFQH-- 286

Query: 308 DWMMEIYDQTHP 319
             + ++YD  HP
Sbjct: 287 --LTKVYDVAHP 296


>gi|257076713|ref|ZP_05571074.1| integrase/recombinase [Ferroplasma acidarmanus fer1]
          Length = 280

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 118/232 (50%), Gaps = 30/232 (12%)

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            +K+   Y K +   T  N++  R   +S  +P  LN+K A  L++          K I 
Sbjct: 71  AMKALRLYYKFKNKNTPPNLIPPR---RSQKMPVYLNQKDAGVLING--------AKSI- 118

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILE 212
            R+ A++ +    G+R+SE  +L   ++  D++ + I  GKGDK RIV +    R+ I  
Sbjct: 119 -RDIAVISVFLYTGIRVSELTNLQIGDVDFDENIIYIHAGKGDKDRIVVMPDICREHIKS 177

Query: 213 YYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           Y       +   I++      LF   +    +    +R ++++ +  G+  + T H LRH
Sbjct: 178 Y-------MKERIRIKSSNNYLFISNKKTKFDTSTVERMVKRVAKNAGITKNVTPHVLRH 230

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           +FAT +L NGGD+R IQ ILGH  L+TTQIYT+++     + + E+Y +  P
Sbjct: 231 TFATSILRNGGDIRFIQQILGHSSLATTQIYTHIDD----NTLKEMYSRHMP 278


>gi|134299970|ref|YP_001113466.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134052670|gb|ABO50641.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 301

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 135/275 (49%), Gaps = 16/275 (5%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R LS  TL+ Y+  T +F+    +  +  I I +++     +   ++ K    +    S+
Sbjct: 17  RNLSPRTLEWYKYITAKFI---NYCNDNDIQIDSLKTPEARQWVNWLQKGSETQYKGNSI 73

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
              +  IK+   Y  + +   ++    +  +K  N++       +   ++  +     ++
Sbjct: 74  NCHIRAIKTMFNYFMEDEYIDKNPFHKVSKIKVDNTIIHTFEPDEIKKMLAQL-----NK 128

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
             + D R++ +L ++Y CGLR+SE ++L   +I  D++  ++ GKG K R+VP   SV++
Sbjct: 129 NTFYDLRDNLMLRIMYDCGLRVSEIINLKITDIDTDKNMFKVFGKGHKERMVPFGRSVKR 188

Query: 209 AILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAH 263
            +++Y        P DL+   +  L    +G PL+     R IR + +  G+     + H
Sbjct: 189 ELVKYLPKRNKAVPHDLD---EGYLLCTNQGTPLHKRNILRKIRIVGQGAGIEGKRLSPH 245

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           T RHSFA   L  GGDL S+Q+I+GH  L++T+ Y
Sbjct: 246 TYRHSFAKQYLMAGGDLFSLQTIMGHSSLNSTRRY 280


>gi|308069238|ref|YP_003870843.1| Site-specific recombinase XerC [Paenibacillus polymyxa E681]
 gi|305858517|gb|ADM70305.1| Site-specific recombinase XerC [Paenibacillus polymyxa E681]
          Length = 318

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 140/288 (48%), Gaps = 33/288 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G +  T ++Y  D +QFL  L     EK     + Q+    + +++SK R    GD +  
Sbjct: 35  GYTIHTQKNYMGDVKQFLRTL----REK----PLDQVKKIHVMSYLSKAREGGAGDSTRN 86

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLK-KSNSLPRALNEKQALTLVDNVLLHTSHE 148
           R  + + SF K L++ ++ + +    ++  K + N +P  L+EK     +  V      E
Sbjct: 87  RKHAAVNSFFKALQEFELCSTNPAAGIKKAKTEKNRMPVYLDEKDIHPFLLAV------E 140

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
            K+ + RN AI  L+   GLR+ E  SL   +   ++ TL + GKG K R +P    V +
Sbjct: 141 GKYAN-RNMAIFLLMVYMGLRVGEVHSLNVSDYSRERRTLDVFGKGRKWRTLP----VPE 195

Query: 209 AILEYYD------LCPFDLNLNIQLPLFRGIR-----GKPLNPGVFQRYIRQLRRYLGLP 257
           A+ ++ +      L P+    +      +G R      + +    F+R+  Q  + +   
Sbjct: 196 AVCDFVEHALEERLTPWRGKEDAMFVSQKGRRLAVRTIQQIATETFERF--QQDKSIERR 253

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            + ++H LRH+FAT LL  G DLR++Q +LGH  + TT +YT+V ++ 
Sbjct: 254 EAYSSHKLRHTFATMLLRKGADLRTVQELLGHSSIQTTTVYTHVTNRE 301


>gi|317051479|ref|YP_004112595.1| integrase family protein [Desulfurispirillum indicum S5]
 gi|316946563|gb|ADU66039.1| integrase family protein [Desulfurispirillum indicum S5]
          Length = 303

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 147/295 (49%), Gaps = 24/295 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N+   + +E+G S  T+  Y     Q L  LA +  E+  I   +++++ E+RA++ +R
Sbjct: 9   KNFCSYMRMEKGCSPGTISKYS----QELGRLAEHLYEQ-GIHDWQEVTHLELRAYLYQR 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS--NSLPRALNEKQALT 136
               +   +    L+ +KSF ++  + +IT  +    +   ++S  + LP+ +N +    
Sbjct: 64  -AGNLSKHTFSTVLATLKSFFRFTVREEITHANPTTKLSFPRRSPQDKLPQYVNSEAQSE 122

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
            +  +L   S +  + + RN +I++     G+R SE  SL   N+     T  I  KG K
Sbjct: 123 FLQQLL---SLKRNFTNDRNRSIIFTFLMTGMRTSELCSLKRSNVSAGTQTFIITRKGGK 179

Query: 197 IRIVPLLPSVRKAILEY----YDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLR 251
            +++P+   + K +  Y    YD  P +         F   +G+P+ P  ++    RQL+
Sbjct: 180 QQVLPMATELVKILDTYWTPWYDAIPSEY-------YFCTKQGQPMTPRTIWHLVSRQLQ 232

Query: 252 RYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           R   L  +   AH LRH+FAT+L+    +L  IQ++LGH  +  TQIYT+V+ ++
Sbjct: 233 RVDTLSCTKQGAHVLRHTFATNLVRRKANLIEIQNLLGHADVRMTQIYTHVSPES 287


>gi|7263003|gb|AAF44051.1|AF206717_5 ResU [Shuttle vector pI3]
          Length = 321

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 143/308 (46%), Gaps = 44/308 (14%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           W   L  E+G S  T++ Y  D R    +L A    + +  +   +LS  ++RAF++   
Sbjct: 10  WAHYLAKEQGRSPATVREYLKDVRLLRSWLDAEDKPQHLRGRDWGELSAADLRAFLA--- 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNI-LNMRNLKKSNSLPRALNEKQALTL 137
                 R   R ++  +SF ++L + +K+    +I  ++   K     P  L  +    L
Sbjct: 67  AADPSPRRFHRLVNSWRSFWRFLVRVQKLPGVQDITADLTTPKIPKRAPVKLTLEDVSKL 126

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQS--TLRIQGKG 194
           ++ V    S +      +N  I+  LYG GLRISE L++   +I   D S   +R+ GKG
Sbjct: 127 LEVVYRDKSPQR---GLKNWCIVAFLYGTGLRISEMLAMKFADIEYQDGSPVAVRVIGKG 183

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF-----QRYIRQ 249
           DK R VPL P+ + A++ +                 R   G P+ P V+     +RY +Q
Sbjct: 184 DKERRVPLSPTAQGALMRWLR--------------ERKTHGNPVTPWVWSPLSGKRYGQQ 229

Query: 250 LR-RYLGLPLSTTA------------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           ++ R +G  L T A            H LRH+FAT LL+NG  L  I+ +LGH  + TT 
Sbjct: 230 MQARTIGKMLDTAAERAGLDPATVSPHKLRHTFATTLLNNGRTLDEIKELLGHENIQTTM 289

Query: 297 IYTNVNSK 304
           IY   +++
Sbjct: 290 IYAQTDTR 297


>gi|156974288|ref|YP_001445195.1| integrase [Vibrio harveyi ATCC BAA-1116]
 gi|156525882|gb|ABU70968.1| hypothetical protein VIBHAR_02003 [Vibrio harveyi ATCC BAA-1116]
          Length = 318

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 134/320 (41%), Gaps = 65/320 (20%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKRRTQKIGD 85
           I R  +K T+++Y    +++++F       K+    + R LS+  I         +K+  
Sbjct: 14  ISRHYAKKTIETYLFWIKRYIVFHQLTHPSKLCEDDVERFLSHLAI--------DEKVAV 65

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLL 143
           ++   +L+ I SFL     R+       LNMR  K      LP  L   +    V +   
Sbjct: 66  KTQALALNAI-SFLY----REYFQMPLSLNMRFQKSLTEKKLPVVLTRDEVRRFVQH--- 117

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL 202
                   ID +    + LLYG GLRI E L L  Q+I  D   LR+ QGKG K R V L
Sbjct: 118 --------IDPKYKLHIQLLYGSGLRIMECLRLRIQDIDYDYGALRVWQGKGGKNRTVTL 169

Query: 203 LPSVRKAI-------LEYYDL----------------------CPFDLNLNIQLPLFR-- 231
              + + +        +YY                           D N +   P  +  
Sbjct: 170 AKELHEPLKAQVNLTRDYYQKDRHMGGYAGVYISDGLRRKYPGAELDFNWHFLFPSTKLS 229

Query: 232 ------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
                   R   +N    QR +++  +  G+  S T HTLRHSFATHLL  G D+R++Q 
Sbjct: 230 IDADTGEFRRHHVNESAIQRAVKRAAKDAGIEKSVTCHTLRHSFATHLLETGADIRTVQE 289

Query: 286 ILGHFRLSTTQIYTNVNSKN 305
            LGH  + TTQIYT V+  N
Sbjct: 290 QLGHTDVKTTQIYTAVHHVN 309


>gi|254452498|ref|ZP_05065935.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198266904|gb|EDY91174.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 319

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/149 (38%), Positives = 84/149 (56%), Gaps = 4/149 (2%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC 217
           +L L YGCGLR  E + L   +I  DQ  +RI Q KG K R V L   +   + +++   
Sbjct: 146 MLSLAYGCGLRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRNVMLPVDILSLLRDWWKER 205

Query: 218 PFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           P   + ++ +    LF G  GK L+     R  ++  +  G+    T HTLRHSFATHLL
Sbjct: 206 PTSQDRDVPVSERVLFPGYCGKYLSARQISRLFKETAQEAGITKPVTLHTLRHSFATHLL 265

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            +G D+R IQ++LGH +L+TT +Y +V +
Sbjct: 266 ESGVDIRVIQALLGHAKLTTTALYASVAT 294


>gi|300872293|gb|ADK38974.1| IntI4 [Vibrio sp. V92(2010)]
          Length = 296

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 91/188 (48%), Gaps = 38/188 (20%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206
           +D ++   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V     L P +
Sbjct: 101 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 160

Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233
           ++ I     YYD                        P++   +   P F+         +
Sbjct: 161 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 220

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R++   LGH  + 
Sbjct: 221 RRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVHEQLGHTDVK 280

Query: 294 TTQIYTNV 301
           TTQIYT+V
Sbjct: 281 TTQIYTHV 288


>gi|218442340|ref|YP_002380665.1| hypothetical protein PCC7424_5613 [Cyanothece sp. PCC 7424]
 gi|218175444|gb|ACK74172.1| hypothetical protein PCC7424_5613 [Cyanothece sp. PCC 7424]
          Length = 273

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 136/288 (47%), Gaps = 38/288 (13%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G SK T+ SY+C  +QFL F+          + +R ++  ++  +++ R        ++ 
Sbjct: 20  GKSKTTVISYQCHVKQFLEFVG---------KPLRDVTLDDLSLWVN-RLNLTYQPVTVA 69

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             +  +KS   +  +    T    +N+ +  KS  L   L E+         +L  S   
Sbjct: 70  NKILTVKSLFSFACRVGYLT----VNVGSFIKSPKLKDTLAER---------ILDPSEVK 116

Query: 150 KWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           + I+A    R+S +L L+YGCGLR+SE   L   ++ + ++T  + GKG K RIV + P+
Sbjct: 117 RLINAAPNERDSVLLSLMYGCGLRVSEVCGLNWSDLKNGKAT--VFGKGAKTRIVIIPPN 174

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           +   +++     P D        +F   RG  L      + I++     G+    ++H L
Sbjct: 175 LWDRLMKL----PRDGE-----AVFMSRRGNRLERTYIHKMIKECCHLSGVSEKASSHWL 225

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           RHS A+H +  G +LR +Q  LGH +L TT+ Y ++N   G    ++I
Sbjct: 226 RHSHASHAVEAGCNLRLLQQSLGHSKLETTEKYLHINPDEGSSQFIDI 273


>gi|288927178|ref|ZP_06421058.1| phage-related integrase [Prevotella buccae D17]
 gi|315608604|ref|ZP_07883587.1| possible tyrosine recombinase [Prevotella buccae ATCC 33574]
 gi|288336047|gb|EFC74448.1| phage-related integrase [Prevotella buccae D17]
 gi|315249707|gb|EFU29713.1| possible tyrosine recombinase [Prevotella buccae ATCC 33574]
          Length = 342

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 152/320 (47%), Gaps = 30/320 (9%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTE---EKITIQTIRQLSYTEIRAFISKRRTQ 81
           L  ERG+S  TL+SY      +L F+    E   EK+T++ + + +  +   ++   ++ 
Sbjct: 18  LSAERGVSSNTLRSYGTAFASYLDFMRVKREVDAEKLTLEHMGRKNVLDYLDWLQTDKSS 77

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +  R+  + L+ I +F +Y++   +T       +  +K   ++   +N    +  V  +
Sbjct: 78  SVSTRN--QRLAAIHAFCRYMQYEDVTRLYQWQEILGVKMKKAIKGTMN-YLTMDAVKEL 134

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIV 200
           L H   +T     R+ A+L LLY  G R+ E + L P ++ +     + + GKG+K R+V
Sbjct: 135 LAHIP-QTTMRGRRDLAMLSLLYETGARVQELIDLRPVDVCLSKPYYVTLFGKGNKKRLV 193

Query: 201 PLLP---SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL- 256
           P+     S+ +  +E   L    +N   Q PLF+  RG  L  G    YI  L+ Y  + 
Sbjct: 194 PIQDAQVSILRKYMEENHLLELRMN---QRPLFQNGRGGKLT-GAGITYI--LKNYATMA 247

Query: 257 --------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                   P   + H LRHS A HLL  G +L  I+ ILGH  + TT++Y   +SK    
Sbjct: 248 RTASENLIPEKISPHCLRHSKAMHLLQAGVNLVYIRDILGHVSIQTTEVYARADSKQK-- 305

Query: 309 WMMEIYDQTHPSITQKDKKN 328
              E  ++T+ SI  +++ N
Sbjct: 306 --REALEKTYTSILPQEEDN 323


>gi|229527749|ref|ZP_04417140.1| integron integrase IntI4 [Vibrio cholerae 12129(1)]
 gi|229334111|gb|EEN99596.1| integron integrase IntI4 [Vibrio cholerae 12129(1)]
          Length = 320

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 91/188 (48%), Gaps = 38/188 (20%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206
           +D ++   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V     L P +
Sbjct: 118 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 177

Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233
           ++ I     YYD                        P++   +   P F+         +
Sbjct: 178 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 237

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH  + 
Sbjct: 238 RRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLDVGADIRTVQEQLGHTDVK 297

Query: 294 TTQIYTNV 301
           TTQIYT+ 
Sbjct: 298 TTQIYTHA 305


>gi|299538025|ref|ZP_07051311.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1]
 gi|298726607|gb|EFI67196.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1]
          Length = 276

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 127/276 (46%), Gaps = 38/276 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           LS  T++ Y     QF  F          ++   ++  T+IRA+++    + +  RS+  
Sbjct: 17  LSPETIRGYRIALTQFFTF---------CVKGFGEVKATDIRAWLASLEEKGLKPRSIHA 67

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L+ +KSF  Y  +     ++  L +R  K  +SLP  L+ ++ + L+  +  H      
Sbjct: 68  KLAALKSFYNYCMEENQVKKNPTLTVRAPKIDDSLPYYLSRRE-VALLQELTRH------ 120

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKA 209
             D RN AI+  LY  G+RISE L +  +++  D   + I +GKG+K R V         
Sbjct: 121 --DPRNRAIVETLYTTGVRISELLQIKLEDVKWDTRQIWIRKGKGNKERFV--------- 169

Query: 210 ILEYYDLCPFDLNLNI------QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
            L  YD C   LN  +         LF    GKPL+    ++  +     LG  +    H
Sbjct: 170 -LFSYD-CLERLNTYLAHRKRESAYLFSNYWGKPLSHVFVEQQFQAFSEELGFRVR--PH 225

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           TLRH+FA HL         IQ +LGH  +++T+IYT
Sbjct: 226 TLRHTFAAHLAEKNMPQSYIQELLGHVNINSTRIYT 261


>gi|317132367|ref|YP_004091681.1| integrase family protein [Ethanoligenens harbinense YUAN-3]
 gi|315470346|gb|ADU26950.1| integrase family protein [Ethanoligenens harbinense YUAN-3]
          Length = 334

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 158/314 (50%), Gaps = 31/314 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL----------AFYTE---EKITIQT 62
           K  +++L  +E  +G S  T++ YE D R F  F+            + E   + + I  
Sbjct: 10  KAVRDFLVYMETIKGKSPGTVREYENDLRTFFRFIKQMRGSVPRDTPFDEIAIDDVDIPF 69

Query: 63  IRQLSYTEIRAF---ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILNMRN 118
           +  ++  +I  +   I+  R  +   R+  R +S ++SF KYL +R  I  E+   ++  
Sbjct: 70  LASITLADIYEYLNYITNERKNRAASRA--RKVSSLRSFYKYLCERAGILQENPTRDLEA 127

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            K+  SLP+ L  ++++ ++ ++      + K+  AR+  I+ L   CG+R+SE + L  
Sbjct: 128 PKQKKSLPKYLTLEESMEVLRDI------DGKFA-ARDYCIMTLFLNCGMRLSELVGLNL 180

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
            +I +  ST+ + GKG+K R + L  +  +A+  Y  +   D ++  +  LF   R + +
Sbjct: 181 SDIRN--STMTVTGKGNKQRTIYLNEACLQALERYLAVRAKD-SVKDRDALFLSNRLQRI 237

Query: 239 NPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQ 296
           +P   Q  + +     GL     + H LRH+ AT L  +G  D+R +Q ILGH  LSTT+
Sbjct: 238 SPKTVQAIVYKYLERAGLSGRGLSVHKLRHTAATLLYQHGHVDVRVLQEILGHENLSTTE 297

Query: 297 IYTNVNSKNGGDWM 310
           IYT+++ +   D +
Sbjct: 298 IYTHLSDRQLQDAV 311


>gi|42520949|ref|NP_966864.1| phage integrase family site specific recombinase [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|42410690|gb|AAS14798.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 328

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 163/334 (48%), Gaps = 39/334 (11%)

Query: 16  KERQNWLQNLEI---------ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           K+ QN  +NL I         ER  ++ TL+SY  D  QF  FL    E   T+  + + 
Sbjct: 4   KQSQNKKENLYITYYIDALASERSAAQNTLESYRSDLHQFEEFL---LESGTTLVGVNK- 59

Query: 67  SYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKIT----TESNILNMRNLKK 121
             T I+ ++    TQK     S+ R +S +K+F K L    I       +N   ++N K 
Sbjct: 60  --TNIKDYVKSLCTQKKYKSSSISRKISAMKNFYKCLFNNGIIDFNPAPANDAELKNPKV 117

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQN 180
           S  LP+ L+ ++   L+D V    S   K I + R  AIL +LY  G+R+SE +S+    
Sbjct: 118 SRPLPKYLSVEEIFLLIDTVRKSASESNKEISSKRLCAILDILYSSGMRVSELISMKLCE 177

Query: 181 IM------DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGI 233
           +       + +  + I+GK  + R +       +++  Y  +    ++   +   LF G 
Sbjct: 178 VSHLINSNNKECYIIIKGKSGRERQILFNEQALQSLRNYLSVRDNLISKEKESDWLFPG- 236

Query: 234 RGKPLNPGVFQRY---IRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGH 289
             KP  P   QR    +++L R   +  +  + H +RHSFATHLL++G ++  IQ +LGH
Sbjct: 237 -DKPNKPITRQRVGQLMKELARKCNIDENKISPHVVRHSFATHLLNSGANIVLIQKVLGH 295

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
             LSTTQIYT++ ++   D + +    +HP ITQ
Sbjct: 296 TNLSTTQIYTHIANEKLKDKLAD----SHP-ITQ 324


>gi|310642278|ref|YP_003947036.1| integrase family protein [Paenibacillus polymyxa SC2]
 gi|309247228|gb|ADO56795.1| Integrase family protein [Paenibacillus polymyxa SC2]
          Length = 318

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 142/303 (46%), Gaps = 49/303 (16%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W+++     G +  T ++Y  D +QFL          +  + + Q+    + +++SK R 
Sbjct: 30  WMKDA----GYTIHTQKNYTGDVKQFL--------RTLRDKPLDQVKKIHVMSYLSKARE 77

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK-KSNSLPRALNEKQALTLVD 139
              GD +  R  + + SF + L++ ++ + +    ++  K + N +P  L+EK     + 
Sbjct: 78  GGAGDSTRNRKHAAVNSFFRALQEFELCSTNPAAGIKKAKTEKNRMPVYLDEKDIQPFLL 137

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            V      E K+ + RN AI  L+   GLR+ E  SL   +   ++ TL + GKG K R 
Sbjct: 138 AV------EGKYAN-RNMAIFLLMVYMGLRVGEIHSLNVSDYSRERRTLDVFGKGRKWRT 190

Query: 200 VPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRG---------------IRG-KPLNPGV 242
           +P+  +V          C F +  L  +L  +RG               +R  + +    
Sbjct: 191 LPVPAAV----------CDFVEHALEERLTPWRGKEDAMFISQKGRRLAVRSIQQIATET 240

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           F+R+  Q  + L    + ++H LRH+FAT LL  G DLR++Q +LGH  + TT +YT+V 
Sbjct: 241 FERF--QQDKGLERREAYSSHKLRHTFATMLLRKGADLRTVQELLGHSSIQTTTVYTHVT 298

Query: 303 SKN 305
            + 
Sbjct: 299 DRE 301


>gi|304387940|ref|ZP_07370113.1| tyrosine recombinase XerD [Neisseria meningitidis ATCC 13091]
 gi|304338037|gb|EFM04174.1| tyrosine recombinase XerD [Neisseria meningitidis ATCC 13091]
          Length = 291

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 116/233 (49%), Gaps = 11/233 (4%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R+LS  K    ++++  I T++    ++  K   ++P  + E+Q   L+      T 
Sbjct: 66  SQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTDTP 125

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
           H       R+ A+L L+Y  GLR+SEA+ L   ++   +  +   GKGDK R+VP+    
Sbjct: 126 H-----GLRDKALLELMYATGLRVSEAVGLNFGSVDLGRGCITALGKGDKQRMVPMGQES 180

Query: 207 RKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              +  YY +  P  L       LF   +   ++  +    +++     G+    + H+L
Sbjct: 181 AYWVERYYTEARPLLLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIG-HISPHSL 239

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           RH+FATHL+ +G DLR +Q +LGH  L+TTQIYT+V +     W+  +  + H
Sbjct: 240 RHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANV----WLQGVVKEHH 288


>gi|189460431|ref|ZP_03009216.1| hypothetical protein BACCOP_01072 [Bacteroides coprocola DSM 17136]
 gi|189462397|ref|ZP_03011182.1| hypothetical protein BACCOP_03083 [Bacteroides coprocola DSM 17136]
 gi|189430903|gb|EDU99887.1| hypothetical protein BACCOP_03083 [Bacteroides coprocola DSM 17136]
 gi|189432863|gb|EDV01848.1| hypothetical protein BACCOP_01072 [Bacteroides coprocola DSM 17136]
          Length = 368

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 83/150 (55%), Gaps = 7/150 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           ++  ++ L+Y  GLR SE L+LTPQ+I+ ++  +RI GKG K R   L   +   +  YY
Sbjct: 209 KHRCMISLIYSAGLRRSELLNLTPQDIISERMLIRIAGKGKKCRYSLLSEKLLNELRAYY 268

Query: 215 DLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                      Q  LF G + G+  +P    + +++  R  G+      H LRH+FATHL
Sbjct: 269 R------EYRPQKWLFEGEQAGEQYSPSALVKILKEAARKAGIKHRVHLHMLRHTFATHL 322

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           L  G DLR+IQ ++GH  + TT IY +V++
Sbjct: 323 LEQGTDLRTIQELMGHTDIKTTAIYLHVSN 352


>gi|300723777|ref|YP_003713084.1| Tyrosine recombinase xerC 2 [Xenorhabdus nematophila ATCC 19061]
 gi|297630301|emb|CBJ90955.1| Tyrosine recombinase xerC 2 [Xenorhabdus nematophila ATCC 19061]
          Length = 342

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 149/314 (47%), Gaps = 44/314 (14%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           ++RG SK T ++Y    R F+ +      E   ++   Q+S   + ++    R+ +  D 
Sbjct: 19  VDRGYSKRTQEAYRERLRPFVDWC-----ELRDVRHAPQVSLALLESWQRYLRSYRKADG 73

Query: 87  SLKRS------LSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSLP-RALNEKQALTL 137
               S      LS ++ + ++L KR   +   + +L M   K+   LP + L+E +  T+
Sbjct: 74  QYYTSGGLINRLSALRGWFRWLLKRHHILYNPAELLTM--PKEEKRLPAQVLSETETETV 131

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
           + ++ + T      +  RN A+L + +  G+R +E ++L   +I   +  + + QGKG K
Sbjct: 132 LMSIDIQTP-----LGLRNRALLEVFWSTGIRRNELINLKLSDIDSGRGVIMVRQGKGRK 186

Query: 197 IRIVPLLPSVRKAILEY-YDLCP-----FDLNLNIQLPLFRGIRGKPLNPGVFQ----RY 246
            R+VP+       +  Y  D+ P     +D        LF  ++G+PL          R 
Sbjct: 187 DRVVPIGERALAWVNRYLADVRPRLAWKYDSGY-----LFITLKGQPLARSTVTLMAGRT 241

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           IRQ  R   L    T H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V   + 
Sbjct: 242 IRQQAR---LNKPGTCHVFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGH- 297

Query: 307 GDWMMEIYDQTHPS 320
              +  ++ QTHP+
Sbjct: 298 ---LKAVHHQTHPA 308


>gi|322806105|emb|CBZ03672.1| tyrosine recombinase XerD [Clostridium botulinum H04402 065]
          Length = 205

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 92/165 (55%), Gaps = 4/165 (2%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A+L L+Y  G++I+E L+L   +I    + ++ +G   + RI+P+     K +  Y 
Sbjct: 43  RDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRERIIPIGSYAIKCLKNYL 102

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           ++ P     N+   LF  ++G  +    F + I+   +   +     ++TLRHSFA HLL
Sbjct: 103 EVRPAINVYNLDY-LFLNLKGTQMTRQGFWKIIKFYAKEASIDKEIDSYTLRHSFAVHLL 161

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            NG D++S+Q +LGH  L+ TQIY++++ K+    + E+Y   HP
Sbjct: 162 QNGADIKSVQELLGHKDLAATQIYSSISKKSK---IAEVYKNAHP 203


>gi|300872283|gb|ADK38969.1| IntI4 [Vibrio sp. V84(2010)]
          Length = 290

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 92/188 (48%), Gaps = 38/188 (20%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206
           +D ++   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V     L P +
Sbjct: 95  VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 154

Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233
           ++ I     YYD                        P++   +   P F+         +
Sbjct: 155 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 214

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R+++  LGH  + 
Sbjct: 215 RRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVREQLGHTDVK 274

Query: 294 TTQIYTNV 301
           TTQIYT+V
Sbjct: 275 TTQIYTHV 282


>gi|227539350|ref|ZP_03969399.1| possible tyrosine recombinase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227240806|gb|EEI90821.1| possible tyrosine recombinase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 301

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 137/274 (50%), Gaps = 27/274 (9%)

Query: 33  KLTLQSYECDT-RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKR 90
           +L +Q Y  +T R +  + + + +      ++ ++  ++I AFI+++ +  KI     K 
Sbjct: 35  RLLMQRYAGNTIRSYKDYASIFLKHVSKYPSLEEIPLSDIEAFINEKVQNGKISVSYQKG 94

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQALTLVDNVLLHTSHET 149
            +  IK   + +  +KI      L+    K+S S LP+  ++++   ++DN         
Sbjct: 95  LVGAIKKMYELILDKKIQ-----LDYLYPKRSFSKLPKFFSKEEVRNILDNTQ------- 142

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRK 208
              + ++ AIL  +Y CGLR+SE L+L  ++I      +RI Q KG+K RIV L   +  
Sbjct: 143 ---NLKHKAILMTIYSCGLRLSELLNLKIKDIKSSDGIIRIHQSKGNKDRIVSLPDKLLA 199

Query: 209 AILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
            +  YY    P +        LF G RG   +    Q  +++      +    + HTLRH
Sbjct: 200 TLRHYYQAFKPKEY-------LFEGERGGKYSERSVQLILKKALIKANVQSEGSVHTLRH 252

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           S+ATHL+ +G D+R ++ +LGH  + TT IYT++
Sbjct: 253 SYATHLIQSGIDIRIVKELLGHENIKTTMIYTHI 286


>gi|114797932|ref|YP_758814.1| tyrosine recombinase XerD [Hyphomonas neptunium ATCC 15444]
 gi|114738106|gb|ABI76231.1| tyrosine recombinase XerD [Hyphomonas neptunium ATCC 15444]
          Length = 309

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 143/320 (44%), Gaps = 44/320 (13%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ +  ERG S  TL +Y    R  L    F     +T       S +++ A+++    
Sbjct: 10  FLEMMSAERGASPNTLDAY---GRDLLDASEFCHLRLVTA------SSSDLSAWLADLAA 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   +  R LS ++ F ++L +     +     +        +P  L+ ++   L+  
Sbjct: 61  RGMAPSTQARKLSAVRRFFRFLFQEGDRKDDPTARLDGPSPEREVPDVLSREEVGRLI-- 118

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS------TLRIQGKG 194
                  E    D R   ++ LLYG GLR +E ++L   N+   ++       + I+GKG
Sbjct: 119 -------EACGNDKRLKCLVELLYGAGLRATELVTLRVGNLPRRKAGQWMSADIIIRGKG 171

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K R+ PL  +   A+ E+ ++    L  N   PL R  +   + P   +      RR L
Sbjct: 172 GKDRLCPLGRAALIALSEWLEVREASLPDN---PLMRSKQEGFVFPSRGKEG-HLTRRRL 227

Query: 255 GLPLSTTA------------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           G  L   A            H LRH++ATHLL  G DLR +Q++LGH  ++TTQIYT+V 
Sbjct: 228 GQMLEDLAGEAGLRSERVYPHALRHAYATHLLQGGADLRVVQTLLGHADIATTQIYTHVL 287

Query: 303 SKNGGDWMMEIYDQTHPSIT 322
           +    D + E+ +  HP  T
Sbjct: 288 T----DELAELLETAHPMAT 303


>gi|37680125|ref|NP_934734.1| super-integron integrase IntIA [Vibrio vulnificus YJ016]
 gi|37198871|dbj|BAC94705.1| super-integron integrase IntIA [Vibrio vulnificus YJ016]
          Length = 320

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 87/194 (44%), Gaps = 38/194 (19%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV-------PLL 203
           ID R    + LLYG GLR+ E + L  Q+I      LR+ QGKG K R V       PLL
Sbjct: 118 IDPRYKLHIMLLYGSGLRVMECVRLRIQDIDYHYGALRVWQGKGGKNRTVTLAKELYPLL 177

Query: 204 PSVRKAILEYYDL----------------------CPFDLNLNIQLPLFRG--------I 233
                  L YY                           D N +   P  R         +
Sbjct: 178 KEQEALALRYYQKDRITAGYAGVWLSSSLQRKYQGAEMDFNWHYLFPSDRLSRDPESDLL 237

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N    QR +++  +  G+  S + HTLRHSFATHLL +G D+R++Q  LGH  + 
Sbjct: 238 RRHHINEQALQRAVKRAAKDAGITKSISCHTLRHSFATHLLESGADIRTVQEQLGHSDVK 297

Query: 294 TTQIYTNVNSKNGG 307
           TTQIYT+V  +  G
Sbjct: 298 TTQIYTHVLERGAG 311


>gi|261212788|ref|ZP_05927072.1| integron integrase IntI4 [Vibrio sp. RC341]
 gi|260837853|gb|EEX64530.1| integron integrase IntI4 [Vibrio sp. RC341]
          Length = 320

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 91/188 (48%), Gaps = 38/188 (20%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206
           +D +    + LLYG GLR+ E + L  Q++  D   +RI QGKG K R V     L P +
Sbjct: 118 VDPKYQLPIKLLYGSGLRLMECIRLRVQDVDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 177

Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233
           ++ I     YYD                        P++   +   P F+         +
Sbjct: 178 KEQIALVKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 237

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH  + 
Sbjct: 238 RRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 297

Query: 294 TTQIYTNV 301
           TTQIYT+V
Sbjct: 298 TTQIYTHV 305


>gi|258623268|ref|ZP_05718275.1| site-specific recombinase IntI [Vibrio mimicus VM573]
 gi|258584454|gb|EEW09196.1| site-specific recombinase IntI [Vibrio mimicus VM573]
          Length = 320

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 90/188 (47%), Gaps = 38/188 (20%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206
           +D +      LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V     L P +
Sbjct: 118 VDPKYQLPAKLLYGSGLRLMECIRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 177

Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233
           ++ I     YYD                        P++   +   P F+         +
Sbjct: 178 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 237

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N  V QR +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH  + 
Sbjct: 238 RRHHMNETVLQRTVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 297

Query: 294 TTQIYTNV 301
           TTQIYT+V
Sbjct: 298 TTQIYTHV 305


>gi|296129328|ref|YP_003636578.1| integrase family protein [Cellulomonas flavigena DSM 20109]
 gi|296021143|gb|ADG74379.1| integrase family protein [Cellulomonas flavigena DSM 20109]
          Length = 308

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 137/297 (46%), Gaps = 12/297 (4%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           +L  +RG+S+ T+++Y  D    L         +  +  + ++  T +R +++      +
Sbjct: 21  HLRAQRGVSEHTVRAYLGDVDHLLNHAV-----RQGVTRVDEIDLTVLRGWLAAMAAADL 75

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
              ++ R  +  ++F ++       +    L +   +   +LP  L  +    L+D    
Sbjct: 76  SRATVARRAAAARTFFRWATHTSRVSADPTLRLGTARAGGALPTVLALEPVTRLLDAARE 135

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
             + +   +  R+ A + LLY  G+R+ E       ++   + TLR+ GKGDK R+VP  
Sbjct: 136 RAA-DGDPVHVRDWATVELLYATGVRVGELCGADVDDLDLQELTLRVVGKGDKQRVVPFG 194

Query: 204 PSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
               +A+  +     P  +  +    L  G RG  ++    +  + +L   +G+      
Sbjct: 195 RPAARAVGAWLATGRPRLVREDSCGALLLGRRGGRIDQRQVRTVVHELAALVGVD-DVAP 253

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           H LRH+ ATHLL  G DLR++Q ILGH  LSTTQ YT+V+++     +   ++  HP
Sbjct: 254 HALRHTAATHLLEGGSDLRTVQEILGHASLSTTQRYTHVSAER----LRSAFELAHP 306


>gi|300872291|gb|ADK38973.1| IntI4 [Vibrio sp. V91(2010)]
          Length = 299

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 92/188 (48%), Gaps = 38/188 (20%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206
           +D ++   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V     L P +
Sbjct: 101 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 160

Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233
           ++ I     YYD                        P++   +   P F+         +
Sbjct: 161 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 220

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R+++  LGH  + 
Sbjct: 221 RRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVREQLGHTDVK 280

Query: 294 TTQIYTNV 301
           TTQIYT+V
Sbjct: 281 TTQIYTHV 288


>gi|295093615|emb|CBK82706.1| Site-specific recombinase XerD [Coprococcus sp. ART55/1]
          Length = 306

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 140/291 (48%), Gaps = 21/291 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N+L+    ++ L + TL++Y+ D +QF  +L            I  +S + +  +I + 
Sbjct: 9   KNYLEYCGKQKCLDEKTLKAYKIDLKQFSDYLCS--------SDITNVSTSILEDYIGEL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALT 136
              K   +++KR ++  K+F  YL+ ++I  + N  N   +K  +   LP+ +  +   T
Sbjct: 61  H-NKYKPKTVKRKIASAKAFFHYLEYKEIL-DRNPFNKLQIKFREPVILPKTIPLRTVET 118

Query: 137 LVDNVLLHTSHETKWIDARNS----AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           ++  +    +        RNS    A++ LL+  G+RISE  +L   +I     ++ I G
Sbjct: 119 ILSTIYEQLNCAKTIYQRRNSLRDAAVIELLFATGMRISELCALKVNDINLYDGSILIYG 178

Query: 193 KGDKIRIVPLL-PSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           KGDK R + +  PSV   + +Y  D     +N N     F    G+ L     +R I + 
Sbjct: 179 KGDKERRLQIGNPSVISILNKYEVDFHSEIMNCN---HFFANQSGRSLTDQTVRRMINKY 235

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                + L  T H  RH+FAT LL    D+R IQ +LGH  ++ T+IYT+V
Sbjct: 236 TALAAIDLHITPHMFRHTFATSLLEADVDIRYIQEMLGHSSINITEIYTHV 286


>gi|302391937|ref|YP_003827757.1| integrase family protein [Acetohalobium arabaticum DSM 5501]
 gi|302204014|gb|ADL12692.1| integrase family protein [Acetohalobium arabaticum DSM 5501]
          Length = 310

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 147/298 (49%), Gaps = 18/298 (6%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTE---EKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           ERG S+ T+  Y+ D   F  +L    +   E++ +  I +   +E  + I   +     
Sbjct: 20  ERGYSESTVNHYKHDLSVFGRYLEKEFDCNLEELNVTNINRFEVSEFLSDIILVKDNSPE 79

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS-NSLPRALNEKQALTLVDNVLL 143
            R+  R L  ++SF +YLKKR I   +   ++   K    S P  LNEK     ++ +  
Sbjct: 80  ARN--RKLYSLRSFFEYLKKRNIIKNNPTDSIEASKSELKSEPIYLNEKNMEKYLEAI-- 135

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
             ++ +K+  +R+ AI  L    GLRISE ++L   +I  +  +++  GKG+K R VPL 
Sbjct: 136 -KNYNSKYC-SRDLAINKLFLYSGLRISELVNLNLDDINYEDQSIKFFGKGNKERYVPLH 193

Query: 204 PSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
                AI +Y      + P   N + +  LF   + + ++    Q+ +++  +  G+  +
Sbjct: 194 QEALTAIKDYLPDRNKITP--KNQDARQALFLSNQRRRISVRTIQKMVKKYAKKAGVRNA 251

Query: 260 T--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  T H LRH+FA+ L     DLR +Q +LGH  +STTQIYT+ + +     + E+ D
Sbjct: 252 SKITPHKLRHTFASLLYQKTKDLRVLQDLLGHSDISTTQIYTHTDKEQRKSAIDEMPD 309


>gi|303243200|ref|ZP_07329628.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302589255|gb|EFL59075.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 337

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 152/322 (47%), Gaps = 42/322 (13%)

Query: 1   MEGNNLPEIVSFELLK---ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-- 55
           M+ N+  +++S   LK   ER ++  N          T++SY    R   I L  Y E  
Sbjct: 1   MKNNHFQQLLSSYFLKYIPERTSYSNN----------TIKSY----RDTFILLFQYHEYL 46

Query: 56  ----EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK---IT 108
                KI+++T+      +   ++   +   +   S+ + L+ + +F K+++K     I 
Sbjct: 47  HKSLSKISLETMNCKYIEDFLVWLECEKHYSVS--SVNQRLAAVHAFFKFVQKENPEYIE 104

Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
             +++L +++ +K   +P      +A+ L    LL     +K    R  AIL LLY  G 
Sbjct: 105 ICTSVLRIKS-QKVPVMPMNYFSVEAIKL----LLSLPDTSKLEGRRELAILTLLYDSGA 159

Query: 169 RISEALSLTPQNIMDDQ-STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           R+ E   LT  ++ + + +T+R+ GKG+K R+VP++P     I  Y D C     +    
Sbjct: 160 RVQEIADLTFGDVRNVKPATVRLTGKGNKTRVVPIMPQSLSVINSYMDDCKKKTVILSTY 219

Query: 228 PLFRGIRGKPLNPG----VFQRYI---RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
           PLF   +G+ L       +  +Y+   R +R+ L  P   + HT+RHS + HLL  G +L
Sbjct: 220 PLFFNKKGEKLTRAGIAYILDKYVDLARSIRQDL-FPNKVSPHTMRHSKSMHLLEGGVNL 278

Query: 281 RSIQSILGHFRLSTTQIYTNVN 302
             I+  LGH  + TT+IY   N
Sbjct: 279 IYIRDFLGHASVVTTEIYAKSN 300


>gi|300872269|gb|ADK38962.1| IntI4 [Vibrio sp. V2(2010)]
          Length = 293

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 90/188 (47%), Gaps = 38/188 (20%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206
           +D +      LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V     L P +
Sbjct: 95  VDPKYQLPAKLLYGSGLRLMECIRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPYL 154

Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233
           ++ I     YYD                        P++   +   P F+         +
Sbjct: 155 KEQIALAKRYYDRDLHQNNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 214

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N  V QR +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH  + 
Sbjct: 215 RRHHMNETVLQRTVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 274

Query: 294 TTQIYTNV 301
           TTQIYT+V
Sbjct: 275 TTQIYTHV 282


>gi|262164337|ref|ZP_06032075.1| integron integrase IntI4 [Vibrio mimicus VM223]
 gi|262026717|gb|EEY45384.1| integron integrase IntI4 [Vibrio mimicus VM223]
          Length = 320

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 90/188 (47%), Gaps = 38/188 (20%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206
           +D +      LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V     L P +
Sbjct: 118 VDPKYQLPAKLLYGSGLRLMECIRLRIQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 177

Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233
           ++ I     YYD                        P++   +   P F+         +
Sbjct: 178 KEQIALAKRYYDKDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 237

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N  V QR +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH  + 
Sbjct: 238 RRHHMNETVLQRTVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 297

Query: 294 TTQIYTNV 301
           TTQIYT+V
Sbjct: 298 TTQIYTHV 305


>gi|160880725|ref|YP_001559693.1| integrase family protein [Clostridium phytofermentans ISDg]
 gi|160429391|gb|ABX42954.1| integrase family protein [Clostridium phytofermentans ISDg]
          Length = 291

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 143/286 (50%), Gaps = 19/286 (6%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           TL +Y  D +++ +FL     ++ ++   ++++ T I +F+ ++  +     ++ R+L  
Sbjct: 22  TLSAYRIDLKRWYLFL-----QENSVSESKKITETMINSFLLQQEKEGKSKATVNRNLVS 76

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           I+SFL YL K           ++  K   + PR L ++Q L+L+     +T         
Sbjct: 77  IRSFLFYLMKHGKLIGDPTERIKPPKVEIAPPRYLTKEQVLSLLSAPDSNTKR-----GL 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A+L L+Y  G+++SE   L  ++I      + ++ +  K R+VP   + R A LE Y
Sbjct: 132 RDKAMLELMYATGMKVSEIGGLKKEDINLKFGCVTVR-ELKKNRVVPFGQAAR-ASLEAY 189

Query: 215 DLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            L   D ++  + P LF G +G+P+      + ++   + +GL    T   +R+SFA H+
Sbjct: 190 -LASED-DVRKESPYLFLGRQGEPMTRQGVWKIMKYYGKQIGLEEDLTPQAIRNSFAIHM 247

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           + NG DL S++ ++GH  ++ TQ YT    K         Y +THP
Sbjct: 248 IENGADLNSMKELMGHANITATQHYT----KQRIGETFGTYHKTHP 289


>gi|11345545|gb|AAD55407.2|AF180939_1 site-specific recombinase IntI [Vibrio mimicus]
          Length = 320

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 90/188 (47%), Gaps = 38/188 (20%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206
           +D +      LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V     L P +
Sbjct: 118 VDPKYQLPAKLLYGSGLRLMECIRLRIQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 177

Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233
           ++ I     YYD                        P++   +   P F+         +
Sbjct: 178 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 237

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N  V QR +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH  + 
Sbjct: 238 RRHHMNETVLQRTVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 297

Query: 294 TTQIYTNV 301
           TTQIYT+V
Sbjct: 298 TTQIYTHV 305


>gi|42524456|ref|NP_969836.1| site-specific recombinase [Bdellovibrio bacteriovorus HD100]
 gi|39576665|emb|CAE80829.1| site-specific recombinase [Bdellovibrio bacteriovorus HD100]
          Length = 294

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 146/311 (46%), Gaps = 27/311 (8%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSY- 68
           +F+L +    +L+ +   +  S LT++ Y  D  Q     AF Y +  +  ++I +    
Sbjct: 4   AFKLSENIDKYLKYMTFIKSASPLTIKHYSLDLMQ-----AFNYEDPSVKAKSISESELL 58

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           +  RA  ++     +  R+  R  + +KSF  +  +  +T +   + +   K    LP  
Sbjct: 59  STARAAFNQWAHLSLASRN--RKAATLKSFFSWAFEESLTEKDLSVQITCPKVPKKLPHF 116

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++  +AL+    VL     ETK I  +   +  LLYG GLR+SEA +L    +   Q  L
Sbjct: 117 VSVDEALS----VLKSFDSETK-IPLKEKVLFLLLYGGGLRVSEACNLKWSEVQTSQKVL 171

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R++GKG K R+V L     + +L++     FD  +            KPLN       +R
Sbjct: 172 RVKGKGSKERVVALPSLTVEVLLKWKKESSFDEYV---------FGEKPLNSRTAYEMVR 222

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           Q     GL      H LRHSFATHLLS+G +LR++Q +LGH  L  T+ YT++    G D
Sbjct: 223 QSGIRAGLLKPLHPHALRHSFATHLLSSGANLRTLQELLGHESLQATEKYTHL----GID 278

Query: 309 WMMEIYDQTHP 319
            +    +  HP
Sbjct: 279 QLARTMENLHP 289


>gi|254168378|ref|ZP_04875223.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|197622659|gb|EDY35229.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
          Length = 255

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 97/187 (51%), Gaps = 19/187 (10%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           KK   LP  L+  +   ++     + +H  K     +  +L  LY  G+R+ E  ++  +
Sbjct: 79  KKKEKLPVVLSRDEVKRMI-----YGTHNIK-----HRLVLMFLYYAGMRLQEVRNIRWE 128

Query: 180 NIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           ++  ++  + I+  KGDK R+V L P++ K  LE Y           +  +F   RGK  
Sbjct: 129 DVEFEREIIHIKVAKGDKERVVFLHPNL-KNTLEIYGRKS-------KGYVFMSQRGKKY 180

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +P   Q  ++   R   +  + T HTLRHSFATHLL  G D+R IQ +LGH  L TTQIY
Sbjct: 181 SPKSIQLIVKNAARRAKINKNVTPHTLRHSFATHLLEGGADIRYIQQLLGHKHLKTTQIY 240

Query: 299 TNVNSKN 305
           T+V +K+
Sbjct: 241 THVANKD 247


>gi|319954827|ref|YP_004166094.1| integrase family protein [Cellulophaga algicola DSM 14237]
 gi|319423487|gb|ADV50596.1| integrase family protein [Cellulophaga algicola DSM 14237]
          Length = 375

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 137/291 (47%), Gaps = 29/291 (9%)

Query: 28  ERGLSKLTLQSYECDT-RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           E  L KL L+ Y  +T R ++     +     TI  I  L+  ++R ++ K   +   + 
Sbjct: 108 EEYLLKLELKRYADNTVRNYVSCFEGFINYYYTIDPI-ALNEIDVRKYLQKLIQEGKSNS 166

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
            +  +++ IK F + +        +    +   +K   LP  +++ + + +++N      
Sbjct: 167 YINMAVNSIKFFYEIVH----GMPNRFYAIERPRKERQLPEVISKDEIVLIMNN------ 216

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS 205
             T  +  R   I+ LLY  GLR +E L+L   +I   +  ++I+  KG+K RI  L PS
Sbjct: 217 --TNTLKHR--CIIGLLYSAGLRRAELLNLNITDIDSKRMVVKIKNAKGNKDRISLLSPS 272

Query: 206 VRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           + K + EYY +  P          LF G  G   +P      I       G+    T H 
Sbjct: 273 ILKDLQEYYKEYRPKKF-------LFEGQSGGKYSPTSVLNLISSAALRAGILKRVTPHM 325

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           LRHSFATHLL NG D+R IQ +LGH    TT+IYT+V +++     MEI D
Sbjct: 326 LRHSFATHLLENGTDIRHIQLLLGHSSTKTTEIYTHVANRS----FMEIKD 372


>gi|329923290|ref|ZP_08278774.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
 gi|328941382|gb|EGG37674.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
          Length = 311

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 138/282 (48%), Gaps = 25/282 (8%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           +R  +K T Q+Y  D + FL          +  + I +++  ++  ++++ R    G R 
Sbjct: 23  DREYAKDTQQAYLHDIKHFL--------NSLEGKPITEVTDIDVMYYLTQVRESGAGARY 74

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLK-KSNSLPRALNEKQALTLVDNVLLHTS 146
             R  S I+ F K + + K+ + +  +++   K + N  P  L +     ++D  L    
Sbjct: 75  RNRCQSAIRLFYKVMIRFKLASINPAMDIEKAKVEKNRQPTYLQK----PILDACL--NG 128

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
            E ++   R+  I+ L+   GLR+SE + L   +   + S++ + GKG+K R +PL   +
Sbjct: 129 IEGRY-KIRDVTIIALMAYAGLRVSEIVKLNLSDFDMENSSIAVLGKGNKWRYIPLPAEL 187

Query: 207 RKAILEYYD--LCPFDLNLN-IQLPLFRGIRGKPLNPGV----FQRYIRQLRRYLGLPLS 259
            K +  Y +  + P     N   +  FR    K +   +    F+    Q  +  G  LS
Sbjct: 188 NKLLHMYLEERMVPRSTKDNAFFVSQFRRRISKRMVQTIAEKTFEAMTEQFPQLSGQSLS 247

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             AH LRHSFAT LL NG DLR++Q +LGH  +STTQIYT+V
Sbjct: 248 --AHKLRHSFATELLRNGADLRAVQELLGHEDISTTQIYTHV 287


>gi|302391372|ref|YP_003827192.1| integrase family protein [Acetohalobium arabaticum DSM 5501]
 gi|302203449|gb|ADL12127.1| integrase family protein [Acetohalobium arabaticum DSM 5501]
          Length = 310

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 145/305 (47%), Gaps = 33/305 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY---------TEEKITIQTIR----Q 65
           +++LQ +E+E+G +  T+++YE D    L+FL +Y          +E + I+  R     
Sbjct: 8   EDFLQWIEVEKGYADSTIKAYEYD---ILLFLRWYDGGEIIQGENKEDLKIKLKRIELEN 64

Query: 66  LSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           ++  E+R F+     +    + +  R ++ +KSF  YL K +  T++   ++   KK  +
Sbjct: 65  VTLEELRKFVVYLAQELDYSNTTRCRKIASLKSFWNYLCKVRKLTDNIASDLSLPKKEPT 124

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
               L +K+      N L     E      R+ +IL +L   G+R+SE ++L   +I  +
Sbjct: 125 TEIYLKQKEI-----NQLFVAIDEISRNIIRDKSILAVLLYTGIRVSECINLNLSDIDLE 179

Query: 185 QSTLRI-QGKGDKIRIV----PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
              LRI +GKG K R++     L+P + K  L+       + N     PLF   RG  LN
Sbjct: 180 SRILRIVKGKGGKSRMIGINKELMPYI-KDYLQKRQQVLIEGN-----PLFLSERGNRLN 233

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               Q + ++     GLP   T H  RH+F +HL  NG  L  I+ I GH  L++ Q Y 
Sbjct: 234 KRTLQYHFKRWVEEAGLPDEVTVHKCRHTFLSHLCQNGASLAEIKQISGHKNLASLQRYL 293

Query: 300 NVNSK 304
           + + K
Sbjct: 294 HNDQK 298


>gi|298368470|ref|ZP_06979788.1| tyrosine recombinase XerD [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282473|gb|EFI23960.1| tyrosine recombinase XerD [Neisseria sp. oral taxon 014 str. F0314]
          Length = 292

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 116/234 (49%), Gaps = 11/234 (4%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R+LS  K    +L++ +   ++    + +  K   LP  + E Q   L+    + T 
Sbjct: 67  SQARALSACKRLYAWLEETEKRADNPTRFLTSPHKEQPLPGLITEAQIEKLLAAPDVDTP 126

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
           H       R+  +L ++Y  GLR++EA+ L   ++  ++  +   GKGDK R VPL    
Sbjct: 127 H-----GLRDKTLLEVMYATGLRVTEAVKLKMSDLDLNKGWINTIGKGDKQRYVPLGEEA 181

Query: 207 RKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              I  Y  +  P  L   I   LF   +   ++  +    +++     G+  S + H L
Sbjct: 182 VYWIERYCAESRPLLLKNKICDELFVSQKKSGISRQLAWMIVKEYADAAGI-RSLSPHGL 240

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           RH+FATHL+++G DLR +Q +LGH  +STTQIYT+V ++     + E+  + HP
Sbjct: 241 RHAFATHLVNHGADLRVVQMLLGHADISTTQIYTHVANQR----LKELVGKHHP 290


>gi|323143041|ref|ZP_08077746.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei
           YIT 12066]
 gi|322417182|gb|EFY07811.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei
           YIT 12066]
          Length = 307

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 85/165 (51%), Gaps = 6/165 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI  LL+  GLR+ E ++L   ++ +    +R+ GKG K R VP+       I  Y 
Sbjct: 140 RDRAIAELLFSSGLRVGELVALNLGDLDETAQEVRVFGKGGKERSVPVGSQALNWIRIYL 199

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
            +   D        LF    G+ +     Q+ + +L    GL +  + H LRHSFAT LL
Sbjct: 200 KVR--DAFNPEDTALFLNRFGRRMTTRAVQQNLDKLASKSGLSIKISPHKLRHSFATELL 257

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            NG DLR +Q +LGH  L+ TQ+YT++N       + EI+ + HP
Sbjct: 258 GNGADLRMVQEMLGHSSLAATQVYTHINFAK----LQEIFSKAHP 298


>gi|114762531|ref|ZP_01441975.1| INTEGRASE/RECOMBINASE [Pelagibaca bermudensis HTCC2601]
 gi|114767359|ref|ZP_01446166.1| INTEGRASE/RECOMBINASE [Pelagibaca bermudensis HTCC2601]
 gi|114540563|gb|EAU43638.1| INTEGRASE/RECOMBINASE [Roseovarius sp. HTCC2601]
 gi|114544786|gb|EAU47791.1| INTEGRASE/RECOMBINASE [Roseovarius sp. HTCC2601]
          Length = 334

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 135/301 (44%), Gaps = 35/301 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q WL     +R  S  T++SY    R  L F+A      +   T+  +S +E+RAF++  
Sbjct: 16  QEWLAE---QRSASIHTIKSYRDTWRMLLRFVAERNGGGVARITLADVSASEVRAFLTHA 72

Query: 79  ---RTQKIGDRSLKRSLSGIKSFLKYLKKRK---ITTESNILNMRNLKKSNSLPRALNEK 132
              R   IG R+ +  L+ I+SF  ++  +    I   + +L +   +K  + P  L   
Sbjct: 73  EHGRKGTIGTRNCR--LAAIRSFFSFVADKDPEYIAQCAEVLTIPLKRKPTAAPCYLEPG 130

Query: 133 QALTLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRI 190
           +    V+ +L      T  I+  R+  +L LLY  G RI EAL L P  I  +    +R+
Sbjct: 131 E----VEAILAQPDRST--IEGMRDHVLLSLLYNSGARIQEALDLCPGAIRFEAPYYVRL 184

Query: 191 QGKGDKIRIVPLLP---SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GV-FQR 245
            GKG K RI PL P   ++ K +LE     P +        +F    G+PL   GV F+ 
Sbjct: 185 YGKGRKERICPLWPETVALMKKLLERQPRAPDER-------IFVNRYGEPLGASGVRFKL 237

Query: 246 YIRQLRRYLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                      P       T H+ RH+ A HL++ G D+  I+S LGH  L TT  Y   
Sbjct: 238 AAYVAAAAKTTPSLRLKHVTPHSFRHATAVHLVAAGVDITVIRSWLGHVSLDTTNHYAQA 297

Query: 302 N 302
           N
Sbjct: 298 N 298


>gi|320156126|ref|YP_004188505.1| integron integrase IntI4 [Vibrio vulnificus MO6-24/O]
 gi|326424001|ref|NP_761248.2| Integron integrase IntI4 [Vibrio vulnificus CMCP6]
 gi|319931438|gb|ADV86302.1| integron integrase IntI4 [Vibrio vulnificus MO6-24/O]
 gi|319999378|gb|AAO10775.2| Integron integrase IntI4 [Vibrio vulnificus CMCP6]
          Length = 320

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 87/194 (44%), Gaps = 38/194 (19%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV-------PLL 203
           ID R    + LLYG GLR+ E + L  Q++      LR+ QGKG K R V       PLL
Sbjct: 118 IDPRYKLHIMLLYGSGLRVMECVRLRIQDVDYHYGALRVWQGKGGKNRTVTLAKELYPLL 177

Query: 204 PSVRKAILEYYDL----------------------CPFDLNLNIQLPLFRG--------I 233
                  L YY                           D N +   P  R         +
Sbjct: 178 KEQEALALRYYQKDRITAGYAGVWLSSSLQRKYQGAEMDFNWHYLFPSDRLSRDPESDLL 237

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N    QR +++  +  G+  S + HTLRHSFATHLL +G D+R++Q  LGH  + 
Sbjct: 238 RRHHINEQALQRAVKRAAKDAGITKSISCHTLRHSFATHLLESGADIRTVQEQLGHSDVK 297

Query: 294 TTQIYTNVNSKNGG 307
           TTQIYT+V  +  G
Sbjct: 298 TTQIYTHVLERGAG 311


>gi|300855279|ref|YP_003780263.1| putative site-specific recombinase [Clostridium ljungdahlii DSM
           13528]
 gi|300435394|gb|ADK15161.1| predicted site-specific recombinase [Clostridium ljungdahlii DSM
           13528]
          Length = 328

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 154/318 (48%), Gaps = 27/318 (8%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE--------E 56
           NL  I + EL +   ++L  L   RG SK T   Y+ D   F  FL  Y          E
Sbjct: 4   NLSNIYNPELPQCLNDFLNYLGTIRGKSKNTQDGYQVDLTMFFRFLKIYRGIVKENYEFE 63

Query: 57  KITIQTI-----RQLSYTEIRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITT 109
            I I  I     R+++ +++ AFIS     +  G+ +  R ++ +KSF KYL  K K+  
Sbjct: 64  NIDISDINTDFIRKITLSDLYAFISFAENYRNNGNYARARKVACLKSFFKYLFSKAKLID 123

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
            +  L + + K     P  L+ K++  L++++      + K+ + R+  I+     CG+R
Sbjct: 124 TNPALELESPKIDKRNPIYLSLKESKILLNSI------DGKFKE-RDYCIITFFLNCGMR 176

Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLP 228
           +SE  S+    I +D  TL + GKG+K R + L  +   A+  Y ++       +  +  
Sbjct: 177 LSELCSINISKIKED--TLTVVGKGNKERTIYLNRACLTALNNYLEIRNKDYDKIKDKDA 234

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DLRSIQSI 286
           LF       +N    +  +++  +  GL  +  T H LRH+ AT +   G  D+RS+Q I
Sbjct: 235 LFLSKNHTRINKRSVEMMLKKYLKNAGLDSNKYTPHKLRHTAATLMYKYGNVDIRSLQKI 294

Query: 287 LGHFRLSTTQIYTNVNSK 304
           LGH  +STTQIYT+V+ +
Sbjct: 295 LGHENVSTTQIYTHVDDE 312


>gi|289595770|ref|YP_003482466.1| integrase family protein [Aciduliprofundum boonei T469]
 gi|289533557|gb|ADD07904.1| integrase family protein [Aciduliprofundum boonei T469]
          Length = 270

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 97/187 (51%), Gaps = 19/187 (10%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           KK   LP  L+  +   ++     + +H  K     +  +L  LY  G+R+ E  ++  +
Sbjct: 94  KKKEKLPVVLSRDEVKRMI-----YGTHNIK-----HRLVLMFLYYAGMRLQEVRNIRWE 143

Query: 180 NIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           ++  ++  + I+  KGDK R+V L P++ K  LE Y           +  +F   RGK  
Sbjct: 144 DVEFEREIIHIKVAKGDKERVVFLHPNL-KNTLEIYGRKS-------KGYVFMSQRGKKY 195

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +P   Q  ++   R   +  + T HTLRHSFATHLL  G D+R IQ +LGH  L TTQIY
Sbjct: 196 SPKSIQLIVKNAARRAKINKNVTPHTLRHSFATHLLEGGADIRYIQQLLGHKHLKTTQIY 255

Query: 299 TNVNSKN 305
           T+V +K+
Sbjct: 256 THVANKD 262


>gi|315606523|ref|ZP_07881538.1| tyrosine recombinase XerC [Prevotella buccae ATCC 33574]
 gi|315251929|gb|EFU31903.1| tyrosine recombinase XerC [Prevotella buccae ATCC 33574]
          Length = 293

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 137/302 (45%), Gaps = 15/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L+ E   S+ T++SY  D R F  F            +   +    IR ++   
Sbjct: 4   EKFLNYLKFELNRSERTVKSYGEDLRAFEEFFKNLDGH----PSWESVDSDIIRDWMESM 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S+ R LS ++SF ++   R++  +    ++   KK   LP+ L E +   L+
Sbjct: 60  MDKGNNATSINRRLSALRSFYRFALARELVVKDPAHDVVGPKKKKPLPQFLKENEINALL 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D+ +   +++    D R   I+   Y  G+R+SE   L   ++      L++ GK +K R
Sbjct: 120 DSDMWEDTYD----DMRARTIVMTFYETGMRLSELTGLRDADVDFVNHELKVTGKRNKQR 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLP 257
           I+P    + + + +Y  L       N     F   +G  + N  V +   + L R   L 
Sbjct: 176 IIPFGAELAQTLADYKSLRDATERGNCG-KFFLTDKGLAMQNAQVREIVKKHLSRVCTLK 234

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T H LRH+FAT +L++   L S++ +LGH RLSTT+IYT+   +     +  +Y   
Sbjct: 235 -KRTPHVLRHTFATAMLNHEAGLESLKRLLGHARLSTTEIYTHTTFEQ----LKRVYTNA 289

Query: 318 HP 319
           HP
Sbjct: 290 HP 291


>gi|304316783|ref|YP_003851928.1| integrase [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778285|gb|ADL68844.1| integrase family protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 288

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 143/301 (47%), Gaps = 20/301 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  L+ ++ LS  T+ SY+ D  QFL +L     EKI I    ++    I  +++  
Sbjct: 6   QAFIDYLKNDKKLSDNTVDSYKRDIIQFLEYL-----EKINIGCF-EVKKATIINYMNLL 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + +     ++ R LS IKSF +YL   ++  E     +   K    +P  L+  Q    V
Sbjct: 60  KHKNRSQATISRHLSSIKSFYQYLFMNRLIDEEPAYTLDAPKIERKVPVTLSIDQ----V 115

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D  LL    E      R+ AI+ +LY  GL++SE +SL   ++  + +   I  K  K R
Sbjct: 116 DK-LLSYEFEKSEKGLRDKAIIEVLYATGLKVSELISLRIDDV--NLNYGYIYCKSAKER 172

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            +P+  S   A+  Y  +     N+     LF  +RG+ L      + I++    +    
Sbjct: 173 FIPIGESAVDALQNYMSVRK---NIKNNDHLFLNMRGEALTRQGCWKIIKEYTDIVNPGF 229

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             T   LR SFA HLL NG D+RS+Q +LG+  +++ ++ + ++       + E+Y ++H
Sbjct: 230 DITPSILRRSFAKHLLENGADIRSVQEMLGYKSVNSNELISLISKSK----IKEVYKKSH 285

Query: 319 P 319
           P
Sbjct: 286 P 286


>gi|154498007|ref|ZP_02036385.1| hypothetical protein BACCAP_01987 [Bacteroides capillosus ATCC
           29799]
 gi|150272997|gb|EDN00154.1| hypothetical protein BACCAP_01987 [Bacteroides capillosus ATCC
           29799]
          Length = 344

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/215 (34%), Positives = 115/215 (53%), Gaps = 20/215 (9%)

Query: 97  SFLKYL-KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
           SF KY+  K K+  E+ + ++ + +   +LP  L+  +++ L+++V      E K    R
Sbjct: 115 SFYKYITSKAKLMDENPMQDLDSPRLKKALPHYLSLDESIQLLESV----DGENK---ER 167

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
           +  IL +   CGLRISE + L   +I  DQ  LR+ GKG+K RI+ L  + R+AI ++  
Sbjct: 168 DYCILIIFLNCGLRISELVGLNLTDIRKDQ--LRVLGKGNKERILFLNEACRQAIDDWLA 225

Query: 216 L----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFA 270
           +       D N      LF   R   +        I+      GL  S  +AH LRH+ A
Sbjct: 226 VRGTQGIIDKN-----ALFITRRHTRMTTDAVHYMIKNRLTAAGLDASMYSAHKLRHTAA 280

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           T +L NG D+R++Q +LGH  L+TTQIYT+V+S +
Sbjct: 281 TLMLQNGVDVRTLQEVLGHDHLNTTQIYTHVDSDD 315


>gi|169830947|ref|YP_001716929.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637791|gb|ACA59297.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 286

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 123/282 (43%), Gaps = 25/282 (8%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
            QN  + RGL+  T   Y    R+FL ++   T  +  +  +  L   + R  + K R  
Sbjct: 9   FQNHLLGRGLAPATAGVYLGHVRRFLAWVEG-THGEADVAAVTSLDVADYRRHLLKDRKP 67

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                ++  +L  + SF  + K   +        +R  ++    PR L  ++   LV  V
Sbjct: 68  A----TVNNALDALSSFFAWAKDAGLVQADPTDGVRRAQEERGAPRWLTRREVGALVRAV 123

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIR 198
             H S        R+ A++ LL   GLR+SEA+ L  Q+ +  + +  +   +GKG+K R
Sbjct: 124 QKHGSK-------RDQALVTLLLHTGLRVSEAVGLKTQDAVIRERSGHVIVRRGKGEKYR 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
            VPL  + RKA+ ++    P         P LF G    PL     ++   +L R  G+ 
Sbjct: 177 EVPLNVTARKALQDWLAAHPGG-------PWLFPGRGEAPLTRWAAEKMFAKLGRLAGV- 228

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
              T H LRH+F   L+  G  L  +  + GH  L+TT  YT
Sbjct: 229 -EVTPHKLRHTFCKMLVDAGESLDRVAVLAGHANLNTTARYT 269


>gi|332158066|ref|YP_004423345.1| integrase/recombinase [Pyrococcus sp. NA2]
 gi|331033529|gb|AEC51341.1| integrase/recombinase [Pyrococcus sp. NA2]
          Length = 279

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 127/237 (53%), Gaps = 28/237 (11%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+++ + +    RS+   +  +K++ K+     + TE+  L    + K+  LPR+L E++
Sbjct: 48  FLARLKKKGYSIRSINLIVHALKAYFKF---EGLETEAEKLKTPKIPKT--LPRSLTEEE 102

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG- 192
              +++             + R+  IL LLYG GLR+SE  +L  +++  ++  L ++G 
Sbjct: 103 IKKVIEAAK----------NLRDRLILLLLYGAGLRVSELCNLKIEDVNFEKGFLIVRGG 152

Query: 193 KGDKIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           KG K RI+PL  ++ + I  Y     D  P+     + + + RG + K L+P      ++
Sbjct: 153 KGGKDRIIPLSETLLQEIQRYLKTRKDNSPY-----LFVEIRRGKKDK-LSPKTVWWIVK 206

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +     G+ L  T H LRHSFATH+L  G D+R IQ +LGH  LSTTQIYT V +K+
Sbjct: 207 KYGEEAGINL--TPHQLRHSFATHMLERGIDIRIIQELLGHASLSTTQIYTKVTTKH 261


>gi|150389215|ref|YP_001319264.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
 gi|149949077|gb|ABR47605.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
          Length = 354

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 142/295 (48%), Gaps = 45/295 (15%)

Query: 22  LQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           LQ LE +   +G S  T +SY    ++FL F+     E +T Q + +  Y  +       
Sbjct: 81  LQQLEKQFTLKGYSPKTKKSYIGHVKRFLGFIN-NKPEVLTKQDVEKYMYHLLNV----- 134

Query: 79  RTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             Q+       ++LS IK + ++ LKK K+     + ++   KK  +LP  L++++ L++
Sbjct: 135 --QENSHAFANQALSAIKFYYQHSLKKDKV-----LYDLPRPKKEKTLPNILSQREVLSI 187

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
           +D+V           + ++ +IL L Y  GLRI E + L   +I  D+  + + QGKG K
Sbjct: 188 LDSV----------NNIKHKSILLLTYSAGLRIGEVVRLKVGDIDSDRMLIHVRQGKGRK 237

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKP---LNPGVFQRYIRQL 250
            R   +L  V  + L  Y +        I+ P   LF G  GK    L     Q+     
Sbjct: 238 DRYT-ILSEVALSTLRKYAM--------IEKPKDWLFPG--GKENCFLTERSVQKIFSVA 286

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +   +    + H+LRHSFATHLL  G DLR IQ +LGH    TT+IYT+V+  N
Sbjct: 287 CKRAKVKKHASVHSLRHSFATHLLEGGTDLRYIQELLGHSSSKTTEIYTHVSEAN 341


>gi|323703842|ref|ZP_08115478.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
 gi|323531199|gb|EGB21102.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
          Length = 293

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 145/297 (48%), Gaps = 36/297 (12%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GL+  T+ +Y+ D   F  +    T+++  +  +  +   E + ++     Q +   ++ 
Sbjct: 20  GLALSTVNAYQKDIAYFAKWYMDTTDKEPHLGDVTSIDLREYQGYMQS--VQDLRPATIN 77

Query: 90  RSLSGIKSFLKYLKKR----KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           R ++ ++ ++++  ++    ++ T   I+     ++  + P+AL   +      N LL  
Sbjct: 78  RRMAALEKYIRWAHEKGYVDRLPTFPKIV-----REQKTPPKALGRVE-----QNRLLRE 127

Query: 146 SHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
           +     +  RN A++ L+  CGLR+SE  A+ LT  +I +    + ++GKG+K R VP+ 
Sbjct: 128 AERRGKV--RNIALIRLMMSCGLRVSEVVAIRLTDLDIGERHGMVAVRGKGNKYREVPVP 185

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P  RKAI E+       +    + P    LF    G  +     ++ ++ + ++ GL + 
Sbjct: 186 PEARKAIREWM------IERAKRYPDSDWLFPNRNGGHITARNAEQLVKNIGKFAGLDIH 239

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
              H LRH+ AT+++  G DL ++  ILGH  L+TT IYT  + K     MME  ++
Sbjct: 240 --PHVLRHTAATNMIRTGADLVTVAQILGHANLNTTAIYTKPDRKT----MMEALEK 290


>gi|315024066|gb|EFT37068.1| Integrase, site-specific recombinase [Riemerella anatipestifer
           RA-YM]
          Length = 293

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 142/305 (46%), Gaps = 24/305 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + IE+  S  TL SY  D + F  F+    +E     T+  +    IR F+   
Sbjct: 5   EKFLDYITIEKRYSLNTLASYSRDLQDFSDFV----KETEGADTLISVDKKVIRNFVVYL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALT 136
               +  R++ R LS ++SF  YL K  I + S +  + +LK      +P +  E + L 
Sbjct: 61  SENNLSKRTINRKLSALRSFYIYLVKLGIISASPMETVSSLKFYGEKQIPFSQKEMENLQ 120

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
                    +   +     N  I+ LLY  G+R SE   L  +++   Q+ +R+ GKG+K
Sbjct: 121 ---------NLLNEEKLLLNKLIIELLYQTGMRKSELCRLALKDVDFIQNRIRVVGKGNK 171

Query: 197 IRIVPLLPSVRKAILEYYDL--CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +R +P+  ++++ +  Y +    P   NL+     F    G+ L        +      +
Sbjct: 172 MREIPISENIKRELKLYLEKERKPTKENLDY---FFVRESGQKLTGKFVYSVVNDYLSAV 228

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
                 + H LRHSFATH+L NG ++  ++ ILGH  L++TQ+YT+ +     + + ++ 
Sbjct: 229 TSKKKKSPHVLRHSFATHVLENGAEIAQVKEILGHASLASTQVYTSTDV----NKLKKVL 284

Query: 315 DQTHP 319
           +  HP
Sbjct: 285 NSFHP 289


>gi|26986514|gb|AAK02082.2| site-specific recombinase IntIA [Listonella pelagia]
          Length = 319

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 131/318 (41%), Gaps = 61/318 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-LSYTEIRAFISKRRTQKIGDRS 87
           R  S  T++SY    +++++F  F    K++ + + Q LS+  ++         K+  ++
Sbjct: 16  RHYSNKTIESYLFWIKRYIVFHQFAHPSKLSEEHVVQFLSHIAVK--------DKVAVKT 67

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
              +L  I    +   +  ++ E         KK   LP  L   +    + +       
Sbjct: 68  QALALCSIAFLYRDFFQTPLSLEMRFQKSLTEKK---LPVVLTRDEIRRFIQH------- 117

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
               ID +      LLYG G+R+ E L L  Q+I  D   +R+ QGKG K R V L   +
Sbjct: 118 ----IDPKYKLQTLLLYGSGVRLMECLRLRIQDIDYDYGAIRVWQGKGGKNRTVTLAKEL 173

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGI--------------------------------- 233
             ++    DL       +  +P + G+                                 
Sbjct: 174 HSSLKAQVDLARSYYQKDCHMPGYAGVYISEGLQRKYPNAQLDFNWHFLFPSAKLSVDPE 233

Query: 234 ----RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
               R   +N    QR +++  +  G+  S T HTLRHSFATHLL +G D+R++Q  LGH
Sbjct: 234 MGELRRHHINESALQRAVKRSAKDAGIEKSVTCHTLRHSFATHLLESGADIRTVQEQLGH 293

Query: 290 FRLSTTQIYTNVNSKNGG 307
             + TTQIYT+V     G
Sbjct: 294 SDVKTTQIYTHVERGASG 311


>gi|167749654|ref|ZP_02421781.1| hypothetical protein EUBSIR_00612 [Eubacterium siraeum DSM 15702]
 gi|167657407|gb|EDS01537.1| hypothetical protein EUBSIR_00612 [Eubacterium siraeum DSM 15702]
          Length = 357

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 155/347 (44%), Gaps = 51/347 (14%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAF----------YTEEKIT------IQTIR 64
           +L  L   +  S+LT  +Y  D R F+ FL            ++E KI+      I+ + 
Sbjct: 21  YLNYLTTIKNRSQLTALNYYTDLRMFMRFLKVKNKLVDANEDFSEIKISDLDDKYIKAVT 80

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNILNMRNLKKSN 123
                E  +F    R+ +   RS  R    ++ F K+L   K     S +LN+      N
Sbjct: 81  LTDAMEFLSFTVSERSNQAKARS--RKAVSLRQFYKFLTNNKAWFAASPMLNLELPSPKN 138

Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--TKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           +LP+ L  ++        LLH   +  + W+D R+ A++ +   CG+R+SE + +   + 
Sbjct: 139 ALPKHLTLQEC-----GQLLHEGFKEFSSWMDYRDYAMIIMFLNCGMRLSELVGINVNDF 193

Query: 182 MD--DQS-------TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---- 228
           ++  D S       ++++ GKG+K RIV L      A+ +Y +        ++  P    
Sbjct: 194 VENIDPSQPCVKYLSVKVLGKGNKERIVYLNEQCVDAVTKYTEA-----RKSVADPKEKA 248

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           LF   RG  +     ++ I    +  GL     + H LRH+ AT +  NG D+R ++ +L
Sbjct: 249 LFISKRGNRITNRRVEQIIDDRLKACGLAGKGISVHKLRHTAATLMYQNGVDVRVLKEVL 308

Query: 288 GHFRLSTTQIYTNV------NSKNGGDWMMEIYDQTHPSITQKDKKN 328
           GH  L+TTQIYT+V      ++ N    M    D   P + Q + KN
Sbjct: 309 GHENLNTTQIYTHVVNTQLRDAINSNPVMDIKNDLPEPDLKQNEDKN 355


>gi|296163709|ref|ZP_06846425.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886049|gb|EFG65951.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 321

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 89/174 (51%), Gaps = 7/174 (4%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILE 212
           AR+ AIL +LY  G+R  E + LT  +I     T+ I QGKG + R +PL       +  
Sbjct: 136 ARDRAILEVLYSTGMRRMELIGLTISDIDLSGGTVMIRQGKGRRDRYIPLGERACYWVEW 195

Query: 213 YYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           Y D + P       +  LF    G+P   G     +++     G+      H LRH+ AT
Sbjct: 196 YCDRIRPSHAVRADEWTLFLTDYGEPFGKGRLSDLVKRYMERAGIR-EGACHVLRHACAT 254

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           H+L NG D+R IQ++LGH  LS+TQIYT V        + EI+  THP+  ++D
Sbjct: 255 HMLENGADIRFIQALLGHADLSSTQIYTQVAIGK----LKEIHAATHPAKLERD 304


>gi|317133822|ref|YP_004089733.1| integrase family protein [Ruminococcus albus 7]
 gi|315450284|gb|ADU23847.1| integrase family protein [Ruminococcus albus 7]
          Length = 326

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 145/318 (45%), Gaps = 33/318 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF-----YTEEKITIQTIRQLSYTEIRA 73
           +++L NL + +    LT   Y  D R FL +L         E K    TI  +    I  
Sbjct: 14  EDFLINLSVIKNRGDLTSSEYYLDIRTFLRYLKVKNKMVSAETKFNDITISDVPIEMIEN 73

Query: 74  FISK---------RRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSN 123
           F  K         +  ++ G  +  R  + +K F  YL  K ++  + N++++       
Sbjct: 74  FTKKDAYLYMVWLKDERQNGASARARKTTSLKQFYDYLANKAQLIPKDNMVSLEVPHVKR 133

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           +LP+ L+  +   L+ ++    +        R+  I+ L   CG+R+SE   +   +I  
Sbjct: 134 ALPKYLSLDEVQKLLSSIRTKNTE-------RDYCIITLFLNCGMRLSELCGININDISF 186

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI---QLPLFRGIRGKPLNP 240
           +  TLR+ GKG K RI+ L  +   AI +Y    P+  N  +   +  LF   R   L+ 
Sbjct: 187 ENKTLRLMGKGKKERIITLNNNCLDAIEKY---LPYRKNYEMAQNEKALFLSSRKNRLSR 243

Query: 241 GVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLSTTQIY 298
              Q+ I +     GL     T H LRH+ AT +  +NGGD+ +++ ILGH   +TT+IY
Sbjct: 244 RRVQKIIEECIMDAGLKNTGVTTHKLRHTAATLMYNNNGGDILAVKEILGHESTATTEIY 303

Query: 299 TNVNS---KNGGDWMMEI 313
           T++ S   KN  D M ++
Sbjct: 304 THLGSEKMKNTMDVMEDL 321


>gi|262403450|ref|ZP_06080008.1| integron integrase IntI4 [Vibrio sp. RC586]
 gi|262349954|gb|EEY99089.1| integron integrase IntI4 [Vibrio sp. RC586]
          Length = 320

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 120/271 (44%), Gaps = 53/271 (19%)

Query: 70  EIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           E+  F++    Q K+  ++   +L+ +    K + K  ++ E   +  +  +    LP  
Sbjct: 49  EVEEFLTDLAVQGKVATKTQSLALNSLSFLYKEILKTPLSLE---IRFQRSQLERKLPVV 105

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L   +   L+D V           D +      LLYG GLR+ E + L  Q+I  D   +
Sbjct: 106 LTRDEIRCLLDVV-----------DPKYQLPAKLLYGSGLRLMECIRLRVQDIDFDYGAI 154

Query: 189 RI-QGKGDKIRIV----PLLPSVRKAIL---EYYDL----------------------CP 218
           RI QGKG K R V     L P +++ I     YYD                        P
Sbjct: 155 RIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAP 214

Query: 219 FDLNLNIQLPLFR--------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           ++   +   P F+         +R   +N  V Q+ +R+  +  G+  + T HTLRHSFA
Sbjct: 215 YEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKTVRRSAQEAGIEKTVTCHTLRHSFA 274

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           THLL  G D+R++Q  LGH  + TTQIYT+V
Sbjct: 275 THLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305


>gi|218442353|ref|YP_002380677.1| integrase family protein [Cyanothece sp. PCC 7424]
 gi|218175457|gb|ACK74184.1| integrase family protein [Cyanothece sp. PCC 7424]
          Length = 273

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 136/288 (47%), Gaps = 38/288 (13%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G SK T+ SY+C  +QFL F+          + +R ++  ++  +++ R        ++ 
Sbjct: 20  GKSKTTIISYQCHIKQFLEFVG---------KPLRDVTLDDLSLWVN-RLNLTYQPVTVA 69

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             +  +KS   +  +    T    +N+ +  KS  L   L E+         +L  +   
Sbjct: 70  NKILTVKSLFSFACRVGYLT----VNVGSFIKSPKLKDTLAER---------ILEKAEVK 116

Query: 150 KWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           + I+A    R+S +L L+YGCGLR+SE   L   ++ + ++T  + GKG K R+V + P+
Sbjct: 117 RLINATPNERDSVLLSLMYGCGLRVSEVCGLNWSDLRNGKAT--VFGKGAKTRVVIIPPN 174

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           +   +++     P D        +F   RG  L      + I++     G+    ++H L
Sbjct: 175 LWDRLMQL----PRDGE-----AVFMSRRGNRLERTYIHKMIKECCHKSGVSEKASSHWL 225

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           RHS A+H +  G +LR +Q  LGH +L TT+ Y ++N   G    ++I
Sbjct: 226 RHSHASHAVEAGCNLRLLQQSLGHSKLETTEKYLHINPDEGSSQFIDI 273


>gi|255692297|ref|ZP_05415972.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
 gi|260622031|gb|EEX44902.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
          Length = 368

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 82/152 (53%), Gaps = 7/152 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           ++  ++ L+Y  GLR SE L+LTPQ+I+ ++  +RI GKG K R   L   V   + EY+
Sbjct: 209 KHHCMISLIYSAGLRRSELLNLTPQDIVSERMLVRIMGKGKKCRYSLLSEKVLHELREYF 268

Query: 215 DLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                      +  LF G   G+  +     + +++  +  G+      H LRHSFATHL
Sbjct: 269 K------EYRPKKWLFEGDTPGEQYSASALVKVLKEAAQRAGIKHRVHVHMLRHSFATHL 322

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           L  G DLR+IQ +LGH  + TT IY +V S +
Sbjct: 323 LEQGTDLRTIQELLGHNDIKTTSIYLHVTSAH 354


>gi|163815939|ref|ZP_02207309.1| hypothetical protein COPEUT_02119 [Coprococcus eutactus ATCC 27759]
 gi|158448749|gb|EDP25744.1| hypothetical protein COPEUT_02119 [Coprococcus eutactus ATCC 27759]
          Length = 306

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 139/291 (47%), Gaps = 21/291 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N+L+    ++ L + TL++Y+ D +QF  +L            I  +S + +  +I + 
Sbjct: 9   KNYLEYCGKQKCLDEKTLKAYKIDLKQFSDYLCS--------SDITNVSTSILEDYIGEL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALT 136
              K   +++KR ++  K+F  YL+ ++I  + N  N   +K  +   LP+ +      T
Sbjct: 61  H-NKYKPKTVKRKIASAKAFFHYLEYKEIL-DRNPFNKLQIKFREPVILPKTIPLHTVET 118

Query: 137 LVDNVLLHTSHETKWIDARNS----AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           ++  +    +        RNS    A++ LL+  G+RISE  +L   +I     ++ I G
Sbjct: 119 ILSTIYEQLNCAKTIYQRRNSLRDAAVIELLFATGMRISELCALKVNDINLYDGSILIYG 178

Query: 193 KGDKIRIVPLL-PSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           KGDK R + +  PSV   + +Y  D     +N N     F    G+ L     +R I + 
Sbjct: 179 KGDKERRLQIGNPSVISILNKYEVDFHSEIMNCN---HFFANQSGRSLTDQTVRRMINKY 235

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                + L  T H  RH+FAT LL    D+R IQ +LGH  ++ T+IYT+V
Sbjct: 236 TALAAIDLHITPHMFRHTFATSLLEADVDIRYIQEMLGHSSINITEIYTHV 286


>gi|315230922|ref|YP_004071358.1| phage integrase [Thermococcus barophilus MP]
 gi|315183950|gb|ADT84135.1| phage integrase [Thermococcus barophilus MP]
          Length = 276

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 118/229 (51%), Gaps = 18/229 (7%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F++  +     ++SL   +  +K++ ++        E     +++ K   SLP++L +++
Sbjct: 45  FLAVLKRSGYSNKSLNLVVQALKAYFRFE-----GLEEEAKKIKSPKVPRSLPKSLTKEE 99

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG- 192
              L+ +V+  T         R+  I+ LLYG GLR+SE  +L   ++   +S + ++G 
Sbjct: 100 VKKLL-SVIPPTRK-------RDRLIVLLLYGSGLRVSELCNLKINDVDFKRSLIIVRGG 151

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K RIVP+  ++ K I +Y  +   D      L   R  R   L+P      + +  +
Sbjct: 152 KGGKDRIVPVPGALLKEIEDYLKMRNDDSEY--LLVEERRSRKDRLSPKTVWYILNKYGK 209

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             G+    T H LRHSFATH+L NG D+R IQ ILGH  LSTTQIYT V
Sbjct: 210 KAGI--KVTPHMLRHSFATHMLENGIDIRVIQEILGHSNLSTTQIYTKV 256


>gi|261406744|ref|YP_003242985.1| integrase family protein [Paenibacillus sp. Y412MC10]
 gi|261283207|gb|ACX65178.1| integrase family protein [Paenibacillus sp. Y412MC10]
          Length = 311

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 137/282 (48%), Gaps = 25/282 (8%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           +R  +K T Q+Y  D + FL          +  + I +++  ++  ++++ R    G R 
Sbjct: 23  DREYAKDTQQAYLHDIKHFL--------NSLEGKPITEVTDIDVMYYLTQVRESGAGARY 74

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLK-KSNSLPRALNEKQALTLVDNVLLHTS 146
             R  S I+ F K + + K+ + +  +++   K + N  P  L +     ++D  L    
Sbjct: 75  RNRCQSAIRLFYKVMIRFKLASTNPAMDIEKAKVEKNRQPTYLQK----PILDACL--NG 128

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
            E ++   R+  I+ L+   GLR+SE + L   ++  + S++ + GKG K R +PL   +
Sbjct: 129 IEGRY-RIRDVTIIALMAYAGLRVSEIVKLNVTDVDMENSSIGVLGKGSKWRYIPLPAEL 187

Query: 207 RKAILEYYD--LCPFDLNLN-IQLPLFRGIRGKPLNPGV----FQRYIRQLRRYLGLPLS 259
            K +  Y +  + P     N   +  FR    K +   +    F     Q  +  G  LS
Sbjct: 188 NKLLQMYLEERMAPRSSKDNAFFVSQFRRRISKRMVQTIAEKTFAAMTEQFPQLSGQSLS 247

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             AH LRHSFAT LL NG DLR++Q +LGH  +STTQIYT+V
Sbjct: 248 --AHKLRHSFATELLRNGADLRAVQELLGHEDISTTQIYTHV 287


>gi|311744114|ref|ZP_07717920.1| integrase/recombinase XerD [Aeromicrobium marinum DSM 15272]
 gi|311313244|gb|EFQ83155.1| integrase/recombinase XerD [Aeromicrobium marinum DSM 15272]
          Length = 306

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 139/310 (44%), Gaps = 29/310 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTR---QFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           ++  +L  ER LS  T++SY  D R   +    L  +    +TI+T+R  S+      + 
Sbjct: 14  DYEHHLTRERDLSPHTVRSYLVDVRGLAEHATRLGIHDPAAMTIRTLR--SHLATLKSLG 71

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           + R       +L R  + ++ F  +L++           + +     +LP  L+      
Sbjct: 72  RARA------TLSRRATALRVFTAWLQRSGRADLDVGALLASPAARRTLPATLSAADMRE 125

Query: 137 LVDNVLLHTSHETKWIDA------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           ++D         T  ID       R+ AIL LLY  G+R+ E + L   ++   +  +R+
Sbjct: 126 VLDAA-------TAMIDGDPVTGTRDLAILELLYATGVRVGELVGLDLDDVDRSRRVVRV 178

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQ 249
            GKG K R VP     + A+  +  +    +   I    +  G+RG  ++P   ++ +  
Sbjct: 179 LGKGRKERTVPFGLPAQDALDAWLAVGRPAVATPISGHAVLLGVRGGRIDPRTVRQVVHD 238

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
               +        H LRH+ ATHLL  G DLRS+Q +LGH  L TTQIYT+V+++     
Sbjct: 239 RLGAVDGVADLGPHGLRHTAATHLLEGGADLRSVQEVLGHASLGTTQIYTHVSNER---- 294

Query: 310 MMEIYDQTHP 319
           +   + Q HP
Sbjct: 295 LRAAFRQAHP 304


>gi|291530765|emb|CBK96350.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 357

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 155/347 (44%), Gaps = 51/347 (14%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAF----------YTEEKIT------IQTIR 64
           +L  L   +  S+LT  +Y  D R F+ FL            ++E KI+      I+ + 
Sbjct: 21  YLNYLTTIKNRSQLTALNYYTDLRMFMRFLKVKNKLVDANEDFSEIKISDLDDKYIKAVT 80

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNILNMRNLKKSN 123
                E  +F    R+ +   RS  R    ++ F K+L   K     S +LN+      N
Sbjct: 81  LTDAMEFLSFTVSERSNQAKARS--RKAVSLRQFYKFLTNNKAWFAASPMLNLELPSPKN 138

Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--TKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           +LP+ L  ++        LLH   +  + W+D R+ A++ +   CG+R+SE + +   + 
Sbjct: 139 ALPKHLTLQEC-----GQLLHEGFKEFSSWMDYRDYAMIIMFLNCGMRLSELVGINVNDF 193

Query: 182 MD--DQS-------TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---- 228
           ++  D S       ++++ GKG+K RIV L      A+ +Y +        ++  P    
Sbjct: 194 VENIDPSQPDVKYLSVKVLGKGNKERIVYLNEQCVDAVTKYTEA-----RKSVADPKEKA 248

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           LF   RG  +     ++ I    +  GL     + H LRH+ AT +  NG D+R ++ +L
Sbjct: 249 LFISKRGNRITNRRVEQIIDDRLKACGLAGKGISVHKLRHTAATLMYQNGVDVRVLKEVL 308

Query: 288 GHFRLSTTQIYTNV------NSKNGGDWMMEIYDQTHPSITQKDKKN 328
           GH  L+TTQIYT+V      ++ N    M    D   P + Q + KN
Sbjct: 309 GHENLNTTQIYTHVVNTQLRDAINSNPVMDIKNDLPEPDLKQNEDKN 355


>gi|167037531|ref|YP_001665109.1| tyrosine recombinase XerD [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320115946|ref|YP_004186105.1| tyrosine recombinase XerD [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166856365|gb|ABY94773.1| tyrosine recombinase XerD [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319929037|gb|ADV79722.1| tyrosine recombinase XerD [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 290

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 145/304 (47%), Gaps = 29/304 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLA-----FYTEEKITIQTIRQLSYTEIRAFI 75
           +L  L   + LSK TL+SY  D +QFL +L      +Y  +K TI  +  L Y +     
Sbjct: 9   FLDFLTKNKKLSKNTLESYNRDIKQFLNYLEEIGINYYNVKKSTI--LNYLYYLK----- 61

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            K ++Q     ++ R++S +K+F  YL  +K   E     +   K     P AL  +Q  
Sbjct: 62  KKGKSQA----TVSRNVSSLKAFYHYLFMKKKIEEDPTYMINTPKVEKKPPTALTVEQV- 116

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
               ++LL           R+ A++ LLY  GL++SE +SL  +++      + I  + +
Sbjct: 117 ----DMLLSIDFGNDEKGLRDKALIELLYATGLKVSEVISLKLEDVNLSYGYVVI--RSN 170

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R++P+     +A+  Y +        N +  LF  +RG+ L      + IR+    + 
Sbjct: 171 KERVIPIGSHAIEALKNYIEKG--RKAKNGENTLFLNLRGEKLTRQGCWKIIREYTDKIN 228

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                T +TLR SFA H+L NG D+R++Q +LG+     T + TN+ S      + E+Y+
Sbjct: 229 PGFPVTPNTLRQSFAQHMLQNGADIRAVQEMLGY----QTDLNTNLLSLISKSKIKEVYN 284

Query: 316 QTHP 319
           + HP
Sbjct: 285 KFHP 288


>gi|194716540|gb|ACF93205.1| putative transposase [Sphingobacterium sp. PM2-P1-29]
          Length = 279

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 137/274 (50%), Gaps = 27/274 (9%)

Query: 33  KLTLQSYECDT-RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKR 90
           +L +Q Y  +T R +  + + + +      ++ ++  ++I AFI+++ +  KI     K 
Sbjct: 13  RLLMQRYAGNTIRSYKDYASIFLKHVSKYPSLEEIPLSDIEAFINEKVQNGKISVSYQKG 72

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQALTLVDNVLLHTSHET 149
            +  IK   + +  +KI      L+    K+S S LP+  ++++   ++DN         
Sbjct: 73  LVGAIKKMYELILDKKIQ-----LDYLYPKRSFSKLPKFFSKEEVRNILDNTQ------- 120

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRK 208
              + ++ AIL  +Y CGLR+SE L+L  ++I      +RI Q KG+K RIV L   +  
Sbjct: 121 ---NLKHKAILMTIYSCGLRLSELLNLKIKDIKSSDGIIRIHQSKGNKDRIVSLPDKLLA 177

Query: 209 AILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
            +  YY    P +        LF G +G   +    Q  +++      +    + HTLRH
Sbjct: 178 TLRHYYQAFKPKEY-------LFEGEKGGKYSERSVQLILKKALIKANVQSEGSVHTLRH 230

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           S+ATHL+ +G D+R ++ +LGH  + TT IYT++
Sbjct: 231 SYATHLIQSGIDIRIVKELLGHENIKTTMIYTHI 264


>gi|167770641|ref|ZP_02442694.1| hypothetical protein ANACOL_01987 [Anaerotruncus colihominis DSM
           17241]
 gi|167667236|gb|EDS11366.1| hypothetical protein ANACOL_01987 [Anaerotruncus colihominis DSM
           17241]
          Length = 339

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 157/323 (48%), Gaps = 40/323 (12%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLA---FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           +G SK T+ +Y  D R FL ++     Y  +   I    Q+S  +I   +    + K+GD
Sbjct: 22  KGRSKRTVDAYYIDLRTFLRYIKCVKHYVADPDDIDAFSQVSIADIP--LETISSIKLGD 79

Query: 86  ----------------RSLKRSLSGIKSFLKYLKKRKITTESN-ILNMRNLKKSNSLPRA 128
                           ++  R +S ++SF  YL  +    + N I N+       S+PR 
Sbjct: 80  VYQYLNYAASERENNAKTRSRKVSSLRSFFNYLTVKSGLLKINPIENLEVPSVKKSVPRY 139

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L  ++ L L+ ++   +S+E      R+  I  L   CG+R+SE + +  Q+I  D  T+
Sbjct: 140 LTLEECLELLTHIE-SSSYE------RDFCIATLFLNCGMRLSELVGINLQDIRGD--TI 190

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R+ GKG+K RIV +  + ++A+  Y  +     N+  +  LF   RG  ++P   ++ I 
Sbjct: 191 RLLGKGNKERIVYINDACKRALTTYLAVRMTPANVKYRDALFLSSRGTRISPRRVEQIIA 250

Query: 249 QLRRYLGLP-LSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +     GL     + H LRH+ AT +  +GG D+R ++ ILGH  LSTT+IYT+++    
Sbjct: 251 RCLEQAGLAGQGYSPHKLRHTAATLMYQHGGVDIRVLKEILGHASLSTTEIYTHIS---- 306

Query: 307 GDWMMEIYDQTHP--SITQKDKK 327
            D  ME   ++ P  S+  + K+
Sbjct: 307 -DRQMEKAAKSSPLSSVAPRKKR 328


>gi|306821127|ref|ZP_07454743.1| integrase XerD [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304550820|gb|EFM38795.1| integrase XerD [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 329

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 121/240 (50%), Gaps = 22/240 (9%)

Query: 87  SLKRSLSGIKSFLKYL------KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           S+KR    +K FL+YL      +K  I  ES I     +K ++ +P  L  ++   +  N
Sbjct: 89  SIKRKKYVLKLFLEYLFEMEILEKTPIPKESVI--KSKIKNNSKIPTYLEIEEIQKI--N 144

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIR 198
             +   ++ ++I +RN  I+ L    GLRISE +SL  +++   + T  L + GKG+K R
Sbjct: 145 QSIRDLYDDEFIRSRNFFIINLFLHTGLRISELVSLDFKDMEKTKKTDYLTVIGKGNKER 204

Query: 199 IVPL--------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           I+P+        L      I  Y D   F +  N    LF   +G  L     Q  ++++
Sbjct: 205 IIPINVDELSKELGDEDNLIKVYLDDRKF-IKSNTD-ALFISKKGGRLTQRYIQMELKKI 262

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
             Y  +    T H LRH+FATH L NG +LR +Q ILGH  +STTQIYT+ + ++  + M
Sbjct: 263 IAYSNIDKRITPHKLRHTFATHFLKNGANLRIVQEILGHSSISTTQIYTHSDKQDLVNAM 322


>gi|282878705|ref|ZP_06287473.1| phage integrase domain protein [Prevotella buccalis ATCC 35310]
 gi|281299096|gb|EFA91497.1| phage integrase domain protein [Prevotella buccalis ATCC 35310]
          Length = 292

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 141/306 (46%), Gaps = 23/306 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L  E+  S LT +SY  D R F  +     ++ IT +++       IR ++   
Sbjct: 3   EEFLNYLRFEKNRSTLTAKSYGDDLRAFERYFQGLGDQ-ITWESV---DSDIIRGWMEDM 58

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S+ R LS ++S  +Y   R +   +  L +   K    LP+ L E +    +
Sbjct: 59  MDRGNSATSICRRLSALRSLYRYSLSRGLVQVNPTLRIERPKMGKPLPQFLKESE----M 114

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D +L  ++ +T + DA    I+   Y  G+R++E + L   ++       ++ GK +K R
Sbjct: 115 DELLDASTWDTSYQDALARTIIITFYETGMRLAELIGLDDVSVDFVNRQFKVLGKRNKQR 174

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +VP    + + + EY +        N Q+       F    G  +N    +  +++    
Sbjct: 175 LVPFGDELYQVLQEYLN------QRNEQIVRKSKAFFLSRNGVRMNHNQVRYLVKKNLSL 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +      T H LRH+FAT +L+NG  L ++Q +LGH  L TT+IYT+   +     + ++
Sbjct: 229 VSTLKKRTPHVLRHTFATTMLNNGAGLENVQKLLGHESLETTEIYTHTTFEQ----LKKV 284

Query: 314 YDQTHP 319
           Y++ HP
Sbjct: 285 YEKAHP 290


>gi|119709809|ref|YP_919149.1| phage integrase family protein [Thermofilum pendens Hrk 5]
 gi|119525915|gb|ABL79286.1| phage integrase family protein [Thermofilum pendens Hrk 5]
          Length = 278

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 101/194 (52%), Gaps = 35/194 (18%)

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           +KK  S+P+AL  +    L+               A    I++LL   GLR+SE +    
Sbjct: 94  VKKPESVPKALGTEDVRKLLSVAS----------PAEREVIVFLL-KTGLRVSEFVHSRC 142

Query: 179 QNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAI-------LEYYDLCPFDLNLNIQLP 228
           ++++   D +  LR++GKGDK+R+VPL   V + I         Y    P D +      
Sbjct: 143 EDVLVVGDGRYMLRVRGKGDKVRLVPLTKDVVEIIKARCTGRAGYIFPSPLDPD------ 196

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
                  KP++    Q  + ++ R  GL    T HTLRH++AT LL+NG D+R+IQ++LG
Sbjct: 197 -------KPVSARSIQHLVSRVARRAGLQ-RVTPHTLRHTYATLLLNNGVDIRTIQTLLG 248

Query: 289 HFRLSTTQIYTNVN 302
           H +L+TTQ+YT V+
Sbjct: 249 HAQLTTTQVYTKVD 262


>gi|332884383|gb|EGK04647.1| hypothetical protein HMPREF9456_03400 [Dysgonomonas mossii DSM
           22836]
          Length = 338

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 139/287 (48%), Gaps = 16/287 (5%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDR 86
           +RG S  T+ +Y     QF+ F+    +  I   T+ QL+Y+ +R F+      + +   
Sbjct: 20  DRGASLRTISTYRYAFIQFIEFMETARDTNIGEITLAQLNYSNVRDFLRWLENNRHVSVS 79

Query: 87  SLKRSLSGIKSFLKYLK---KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
           +  + L+ +KSF  ++K      +T    I+ +++     +    L+ +    L+D + +
Sbjct: 80  TTNQRLAALKSFATFVKYEFPEYLTASEEIVKIKSKVNEQTTISYLSPEGMRCLLDTIDI 139

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPL 202
                T     R+  I+ LL+  G+R+SE +++  +++ M     + I GKG+K R VP+
Sbjct: 140 -----TMQSGLRDYTIILLLFLTGIRVSELIAIKGRDVCMSSPRHIVIHGKGNKNRHVPM 194

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PGV---FQRYIRQLRRYLG--L 256
           +  +   +++Y  L  F L  N+  PLFR   G      G+     +Y +Q +R     +
Sbjct: 195 VKELHAQLMKYAKLFDFTLVRNLDKPLFRNHSGDEFTRQGINYTLLKYAQQAKRKNPELI 254

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           P   + H +RHS A  L+  G +L  I+ +LGH  +  T+IY  ++S
Sbjct: 255 PEHLSPHKIRHSTAMSLVEQGTELIIIRDLLGHRSIQATEIYAKLSS 301


>gi|255692176|ref|ZP_05415851.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
 gi|299146444|ref|ZP_07039512.1| putative tyrosine recombinase [Bacteroides sp. 3_1_23]
 gi|260622041|gb|EEX44912.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
 gi|298516935|gb|EFI40816.1| putative tyrosine recombinase [Bacteroides sp. 3_1_23]
          Length = 383

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 7/152 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           ++  ++ L+Y  GLR SE L+LTP++I+ ++  +RI GKG K R   L   +   +  YY
Sbjct: 224 KHRCMISLIYSAGLRRSELLNLTPKDIISERMLIRIAGKGKKCRYSLLSEKLLNELRAYY 283

Query: 215 DLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                      Q  LF G + G+  +P    + +++  R  G+      H LRH+FATHL
Sbjct: 284 R------EYRPQKWLFEGEQSGEQYSPSALVKVLKEAARKAGIKHRVHLHMLRHTFATHL 337

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           L  G DLR+IQ ++GH  + TT IY +V++ +
Sbjct: 338 LEQGTDLRTIQELMGHTDIKTTAIYLHVSNAH 369


>gi|56416387|ref|YP_153461.1| integrase/recombinase [Anaplasma marginale str. St. Maries]
 gi|56387619|gb|AAV86206.1| integrase/recombinase [Anaplasma marginale str. St. Maries]
          Length = 312

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 138/312 (44%), Gaps = 29/312 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L++L   R +S  T  SY  D      FL       +        S  ++RA++    +
Sbjct: 10  FLESLLSGRCVSPNTSSSYRSDLEDLAEFLGRRNLRMV------DASAADLRAYVRSLNS 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     ++ R +S I+    +L   +I       N+ + K    LP+ L   +    VD 
Sbjct: 64  RGYSPATVARRISAIRGLYGFLYGDRIIDGDPAANLDSCKLGRPLPKVLTVDE----VDK 119

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-------MDDQSTLRIQGK 193
           +L     +      R +AI+ +LY  G+RISE ++L   +I         D   L I+GK
Sbjct: 120 LLCAAGSDLSVEGRRTAAIVNILYSSGVRISELINLGFYDIESMLKEQRSDVGHLVIKGK 179

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRR 252
             + R++ L      +I+ Y  L   D  +  Q    R +  G   +  + ++ + QL +
Sbjct: 180 AGRERLILLNEVAIASIVAY--LAVRDHFIVGQKSESRWLFPGAKFDQCISRQRVGQLLK 237

Query: 253 YLGL-----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            L +     P   + H LRHSFATHLL+NG ++  IQ +LGH  LSTTQIYT V      
Sbjct: 238 ALAIVAGVDPKRISPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYV----AN 293

Query: 308 DWMMEIYDQTHP 319
           D + E     HP
Sbjct: 294 DRLKEALQTFHP 305


>gi|189460668|ref|ZP_03009453.1| hypothetical protein BACCOP_01310 [Bacteroides coprocola DSM 17136]
 gi|189432627|gb|EDV01612.1| hypothetical protein BACCOP_01310 [Bacteroides coprocola DSM 17136]
          Length = 296

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 148/303 (48%), Gaps = 15/303 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           + ++L+ L+ E+  S  T+ SY  D  +F  +  F T ++    T+  +    IR ++  
Sbjct: 6   KDSFLKYLQFEKNYSDKTIVSYGIDLEKFEEY--FKTVDECLDFTVVDVDL--IRGWVLS 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S+ R LS ++SF +YL ++ + +   +  +   KK   LP  + E     L
Sbjct: 62  LMEEGYTATSVNRKLSSLRSFYRYLLRQGVVSVDPLQKVVGPKKKKPLPVFVKEADMSRL 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D     TS E      R+  IL + Y  G+R+SE + LT  ++      +++ GK +K 
Sbjct: 122 LDEADFGTSFEG----VRDKVILEVFYETGVRLSELVGLTDADVDLSLKQIKVTGKRNKQ 177

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG-VFQRYIRQLRRYLGL 256
           R +P    ++  +  Y  +         +    RG  GKP+ PG V+    R L + + L
Sbjct: 178 RFIPFGDKLKSDLNAYLSVREERFPGGGEAFFLRG-NGKPIYPGLVYLLVKRNLSKVVSL 236

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRHSFAT +L+N  +L +++ +LGH  L+TT++YT+   +     + ++Y+Q
Sbjct: 237 K-KKSPHVLRHSFATSMLNNHAELGAVKELLGHESLTTTEVYTHTTFEE----LKKVYEQ 291

Query: 317 THP 319
            HP
Sbjct: 292 AHP 294


>gi|313887029|ref|ZP_07820729.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923555|gb|EFR34364.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 304

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 137/274 (50%), Gaps = 27/274 (9%)

Query: 33  KLTLQSYECDT-RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKR 90
           +L +Q Y  +T R +  + + + +      ++ ++  ++I AFI+++ +  KI     K 
Sbjct: 38  RLLMQRYAGNTIRSYKDYASIFLKHVSKYPSLEEIPLSDIEAFINEKVQNGKISVSYQKG 97

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQALTLVDNVLLHTSHET 149
            +  IK   + +  +KI      L+    K+S S LP+  ++++   ++DN         
Sbjct: 98  LVGAIKKMYELILDKKIQ-----LDYLYPKRSFSKLPKFFSKEEVRNILDNTQ------- 145

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRK 208
              + ++ AIL  +Y CGLR+SE L+L  ++I      +RI Q KG+K RIV L   +  
Sbjct: 146 ---NLKHKAILMTIYSCGLRLSELLNLKIKDIKSSDGIIRIHQSKGNKDRIVSLPDKLLA 202

Query: 209 AILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
            +  YY    P +        LF G +G   +    Q  +++      +    + HTLRH
Sbjct: 203 TLRHYYQAFKPKEY-------LFEGEKGGKYSERSVQLILKKALIKANVQSEGSVHTLRH 255

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           S+ATHL+ +G D+R ++ +LGH  + TT IYT++
Sbjct: 256 SYATHLIQSGIDIRIVKELLGHENIKTTMIYTHI 289


>gi|222474757|ref|YP_002563172.1| Tyrosine recombinase (xerD) [Anaplasma marginale str. Florida]
 gi|255003855|ref|ZP_05278656.1| Tyrosine recombinase (xerD) [Anaplasma marginale str. Virginia]
 gi|222418893|gb|ACM48916.1| Tyrosine recombinase (xerD) [Anaplasma marginale str. Florida]
          Length = 312

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 138/312 (44%), Gaps = 29/312 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L++L   R +S  T  SY  D      FL       +        S  ++RA++    +
Sbjct: 10  FLESLLSGRCVSPNTSSSYRSDLENLAEFLGRRNLRMV------DASAADLRAYVRSLNS 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     ++ R +S I+    +L   +I       N+ + K    LP+ L   +    VD 
Sbjct: 64  RGYSPATVARRISAIRGLYGFLYGDRIIDGDPAANLDSCKLGRPLPKVLTVDE----VDK 119

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-------MDDQSTLRIQGK 193
           +L     +      R +AI+ +LY  G+RISE ++L   +I         D   L I+GK
Sbjct: 120 LLCAAGSDLSVEGRRTAAIVNILYSSGVRISELINLGFYDIESMLKEQRSDVGHLVIKGK 179

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRR 252
             + R++ L      +I+ Y  L   D  +  Q    R +  G   +  + ++ + QL +
Sbjct: 180 AGRERLILLNEVAIASIVAY--LAVRDHFIVGQKSESRWLFPGAKFDQCISRQRVGQLLK 237

Query: 253 YLGL-----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            L +     P   + H LRHSFATHLL+NG ++  IQ +LGH  LSTTQIYT V      
Sbjct: 238 ALAIVAGVDPKRISPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYV----AN 293

Query: 308 DWMMEIYDQTHP 319
           D + E     HP
Sbjct: 294 DRLKEALQTFHP 305


>gi|330832570|ref|YP_004401395.1| integrase family protein [Streptococcus suis ST3]
 gi|329306793|gb|AEB81209.1| integrase family protein [Streptococcus suis ST3]
          Length = 298

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 144/300 (48%), Gaps = 27/300 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L    I+R LS  T+++Y+ D  Q+  F                    +IR++++  
Sbjct: 7   QRYLDFCAIQRRLSSHTIRAYKSDLHQYYNF-----------------GTNDIRSYLTFL 49

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPR--ALNEKQAL 135
                   +LKR ++ +KS+ K+L++ K+ +++    +R + K+   LP+  +L + Q +
Sbjct: 50  NQHIKKTSTLKRKIASLKSYYKFLEEEKLISKNPFHQLRLHYKEEKKLPKTISLKDLQKI 109

Query: 136 TLVDNVLLHTSHETKWI--DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
               +  +  S     +    RN  ++ LL   GLRISE  +L   NI  +  T++I GK
Sbjct: 110 YCFAHQQIENSKNKHSMRKAMRNLLLISLLLSTGLRISELCNLKLDNINLENRTIQILGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRR 252
           G K R++ +      ++LE Y       + +    LF G++    L     +  ++ +  
Sbjct: 170 GKKERLLYIGNDETLSLLEDY----IAHHCSHSSYLFTGVKNDDHLKEPSVRLILKNISH 225

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            L L    T H  RHSFAT LL NG D+R IQ +LGH  ++ TQIYT+V+     + + E
Sbjct: 226 SLQLKKHITPHMFRHSFATMLLDNGVDIRQIQHLLGHSNINVTQIYTHVSQSKQVEILSE 285


>gi|300872285|gb|ADK38970.1| IntI4 [Vibrio sp. V87(2010)]
          Length = 290

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 38/188 (20%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206
           +D ++   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V     L P +
Sbjct: 95  VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 154

Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233
           ++ I     YYD                        P++   +   P F+         +
Sbjct: 155 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 214

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N  V Q+ +R+  +  G+  + T HTLRHSFAT+LL  G D+R++  +LGH  + 
Sbjct: 215 RRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATNLLEVGADIRTVHELLGHTDVK 274

Query: 294 TTQIYTNV 301
           TTQIYT+V
Sbjct: 275 TTQIYTHV 282


>gi|28371755|gb|AAO38263.1| tyrosine recombinase IntIA [Vibrio natriegens]
          Length = 320

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 85/188 (45%), Gaps = 38/188 (20%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210
           ID +      LLYG GLR+ E L L  Q+I  D   +R+ QGKG K R V L   +  ++
Sbjct: 118 IDPKYKLQTLLLYGSGLRLMECLRLRIQDIDYDYGAIRVWQGKGGKNRTVTLAKELHSSL 177

Query: 211 LEYYDLCPFDLNLNIQLPLFRGI------------------------------------- 233
               DL       +  +P + G+                                     
Sbjct: 178 KAQVDLARSYYQKDCHMPGYAGVYISEGLQRKYPNAQLDFNWHFLFPSAKLSVDPEMGEL 237

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N    QR +++  +  G+  S T HTLRHSFATHLL +G D+R++Q  LGH  + 
Sbjct: 238 RRHHINESALQRAVKRSAKDAGIEKSVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVK 297

Query: 294 TTQIYTNV 301
           TTQIYT+V
Sbjct: 298 TTQIYTHV 305


>gi|256751764|ref|ZP_05492637.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749292|gb|EEU62323.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 307

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 143/294 (48%), Gaps = 14/294 (4%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD-RS 87
           + LS +++  Y+ D ++F  ++   T++ I    I+ ++   I+++    + +K  +  +
Sbjct: 17  KNLSPVSINGYQRDLQEFYNWI---TQQGIL--NIQDITPHHIKSYFMHLKNEKNNNPVT 71

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           L   L+ +++F  Y+ + KI  E+ +   +  +K++    A  ++Q   ++         
Sbjct: 72  LNHKLTNLRAFFNYMVQEKILKETPVKIEK--QKTDVKIEAFTDEQVYQMLRYFRKLKQR 129

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
           E  +   RN  I+    G G+R+SE ++L  ++I      + + GK  K R +PL   +R
Sbjct: 130 EKTFYAYRNYLIILTFLGTGIRLSEIVNLKWRDIDLINDKITVYGKSRKQRTIPLQERLR 189

Query: 208 KAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTL 265
           +   EYY  C   ++N      +F  IR K L+        R+L++ +G   +    HT 
Sbjct: 190 EEFKEYYAFCKKNNINFTDDDYVFTDIRKKQLSKNAIHLVFRRLKKVMGWKNVKLAPHTF 249

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           RH+FA + + +GGD+ S+Q +LGH  +  T  Y ++     G  + E  D+ +P
Sbjct: 250 RHTFAKNWILSGGDVFSLQRVLGHQSIEMTNRYVSL----FGSALKEQNDKYNP 299


>gi|288926256|ref|ZP_06420181.1| tyrosine recombinase XerD [Prevotella buccae D17]
 gi|288336947|gb|EFC75308.1| tyrosine recombinase XerD [Prevotella buccae D17]
          Length = 293

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 135/302 (44%), Gaps = 15/302 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L+ E   S+ T++SY  D R F  F            +   +    IR ++   
Sbjct: 4   EKFLNYLKFELNRSERTVKSYGEDLRAFEEFFKNLDGH----PSWESVDSDIIRDWMESM 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S+ R LS ++SF ++   R++  +    ++   KK   LP+ L E +   L+
Sbjct: 60  MDKGNNATSINRRLSALRSFYRFALARELVVKDPAHDVVGPKKKKPLPQFLKENEINALL 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D+ +     E  + D R   I+   Y  G+R+SE   L   ++      L++ GK +K R
Sbjct: 120 DSDMW----EDTYDDMRARTIVMTFYETGMRLSELTGLRDADVDFVNHELKVTGKRNKQR 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLP 257
           I+P    +   + +Y  L       N     F   +G  + N  V +   + L R   L 
Sbjct: 176 IIPFGAELAHTLADYKSLRDATERGNCG-KFFLTDKGLAMQNAQVREIVKKHLSRVCTLK 234

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T H LRH+FAT +L++   L S++ +LGH RLSTT+IYT+   +     +  +Y   
Sbjct: 235 -KRTPHVLRHTFATAMLNHEAGLESLKRLLGHARLSTTEIYTHTTFEQ----LKRVYTNA 289

Query: 318 HP 319
           HP
Sbjct: 290 HP 291


>gi|282858397|ref|ZP_06267577.1| phage integrase, N-terminal SAM domain protein [Prevotella bivia
           JCVIHMP010]
 gi|282588845|gb|EFB93970.1| phage integrase, N-terminal SAM domain protein [Prevotella bivia
           JCVIHMP010]
          Length = 290

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 141/299 (47%), Gaps = 15/299 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +E+G S  T+ +Y  D + F  F   + +E ++ ++I       +R ++     
Sbjct: 5   FLDYLRLEKGYSLKTIDNYRDDLKGFERFYKNF-DETLSWESIDS---DIVRNWVEFMMD 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            K    S+ R LS ++S  +Y  K     +  +  ++  KK  SLP+ + E +   L+ +
Sbjct: 61  NKAAAASVNRRLSALRSLYRYSLKHGFVEKDPVYGIQGPKKPKSLPQFVKESELDQLLQD 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +   +++    D     ++ +LY  G+R+ E + L   ++    S++++ GK +K R++
Sbjct: 121 EMWADTYQ----DLLARTLIVVLYETGMRLGEIVGLNLNSVDFHTSSVKVTGKRNKQRVI 176

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P    +  ++  Y         +  +   F   +G+ +N    +  +++    +      
Sbjct: 177 PFGEELESSLKAYLGKRK---AIAGEEAFFTTEKGERVNDYQVRDLVKKNLSKVSTLKKR 233

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           T H LRHSFAT +L++   L S++ +LGH  LSTT+IYT+   +     +  IY   HP
Sbjct: 234 TPHVLRHSFATAMLNHNAGLESVRKLLGHESLSTTEIYTHTTFEQ----LKRIYKNAHP 288


>gi|226314997|ref|YP_002774893.1| hypothetical protein BBR47_54120 [Brevibacillus brevis NBRC 100599]
 gi|226097947|dbj|BAH46389.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 290

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 130/276 (47%), Gaps = 20/276 (7%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRAFISKRRTQKI-GDRS 87
           G S+ T+  Y+ D   F  FL    E K   +  I ++  T+I  F+   +T++     S
Sbjct: 21  GRSEQTITGYKKDLSYFTRFL----ERKYNCEPYIDEVLVTDIEDFLLYLKTERAYAPAS 76

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
            +R+L   +SF  Y +K++  + +  L++  +K        L E +    VD ++    H
Sbjct: 77  RQRNLHTFRSFFAYAQKKEWVSRNIALSVEKIKVQQKERTYLEEAE----VDELVSEIDH 132

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
               +      ++ +LY  G+RISE L+L    +  DQ  + +  GKG+K R +P+ P +
Sbjct: 133 PLIRL------VVMVLYMTGMRISECLNLKVDEVKWDQQVIHVVAGKGNKDRFIPISPRL 186

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              + EY      D + N     F   +   L+P    R I +  + LG     TAH LR
Sbjct: 187 LPMLKEYVLHHRPDSDSN---RFFCTKKTGKLSPVYVNREITEAVKRLGWSKKVTAHILR 243

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           HSFA+ L+    +L  IQ +LGH  L+ T +YT+ N
Sbjct: 244 HSFASQLVKKDVNLVQIQKLLGHSSLNVTSVYTHTN 279


>gi|58696879|ref|ZP_00372392.1| tyrosine recombinase XerD [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|225630697|ref|YP_002727488.1| site-specific recombinase, phage integrase family [Wolbachia sp.
           wRi]
 gi|58536905|gb|EAL60089.1| tyrosine recombinase XerD [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|225592678|gb|ACN95697.1| site-specific recombinase, phage integrase family [Wolbachia sp.
           wRi]
          Length = 328

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 163/334 (48%), Gaps = 39/334 (11%)

Query: 16  KERQNWLQNLEI---------ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           K+ QN  +NL I         ER  ++ TL+SY  D  QF  FL    E   T+  + + 
Sbjct: 4   KQSQNKKENLYITYYIDALASERFAAQNTLESYRSDLHQFEEFL---LESGTTLVGVNK- 59

Query: 67  SYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKIT----TESNILNMRNLKK 121
             T I+ ++    TQK     S+ R +S +K+F K L    I       +N   ++N K 
Sbjct: 60  --TNIKDYVKSLCTQKKYKSSSISRKISAMKNFYKCLFNDGIIDFNPAPANDAELKNPKV 117

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQN 180
           S  LP+ L+ ++   L+D V    S   K I + R  AIL +LY  G+R+SE +S+    
Sbjct: 118 SRPLPKYLSVEEIFLLMDTVRKSASESNKEISSKRLCAILDILYSSGMRVSELISMKLCE 177

Query: 181 IM------DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGI 233
           +       + +  + I+GK  + R +       +++  Y  +    ++   +   LF G 
Sbjct: 178 VSHLINSNNKECYIIIKGKSGRERQILFNEQALQSLRNYLSVRDNLISKEKESDWLFPG- 236

Query: 234 RGKPLNPGVFQRY---IRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
             KP  P   QR    +++L R   +  +  + H +RHSFATHLL++G ++  IQ +LGH
Sbjct: 237 -DKPNKPITRQRVGQLMKELARKCNIDENKISPHVIRHSFATHLLNSGANIVLIQKVLGH 295

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
             LSTTQIYT++ ++   D + +    +HP ITQ
Sbjct: 296 TNLSTTQIYTHIANEKLKDKLAD----SHP-ITQ 324


>gi|325953803|ref|YP_004237463.1| integrase [Weeksella virosa DSM 16922]
 gi|323436421|gb|ADX66885.1| integrase family protein [Weeksella virosa DSM 16922]
          Length = 355

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 145/303 (47%), Gaps = 38/303 (12%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDT-----RQFLIFLAFYTEEKITIQTIRQ 65
           ++E + E  + + +   ++ ++ LTL+SY  +T      +FL FL F+ +       +  
Sbjct: 67  NYEHITENIHPIHHHAFKQFINYLTLKSYSNNTIKTYRTEFLSFLNFFDD-----VAVEN 121

Query: 66  LSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L+  +++A+     TQ K+ + ++   ++ +K    +  ++ +  E    ++   KK   
Sbjct: 122 LTPDQLQAYFLVCATQHKLSEATINSRMNAVK----FYYEKVLKYERMFFDIPRPKKPLQ 177

Query: 125 LPRALNEKQAL---TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           LP+ LN K+ L   ++ DN+             ++  IL L YG GLR+SE   L   +I
Sbjct: 178 LPKTLNRKEILLLFSVTDNL-------------KHLMILKLCYGMGLRVSELAKLKIIDI 224

Query: 182 MDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                T+RI+ GKG K R V L  S+ + +  YY      +       LF G  G  ++ 
Sbjct: 225 DSQTMTVRIERGKGKKDRFVTLPQSILEDLRLYY------VTYRPSYFLFEGRGGSEIST 278

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              Q+  +       +  +   H+LRHS+ATHLL  G D+  IQ +LGH  + TT  YT+
Sbjct: 279 RTIQKVFKDAMHKAKIQKNVGIHSLRHSYATHLLELGTDISHIQKLLGHESIKTTLSYTH 338

Query: 301 VNS 303
           V++
Sbjct: 339 VSN 341


>gi|253578208|ref|ZP_04855480.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850526|gb|EES78484.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 317

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 146/305 (47%), Gaps = 23/305 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L+     + L + T+++Y  D  Q+  F+A    +K            +I  +I++  
Sbjct: 21  SYLEYCTYRKELDQKTVKAYRIDLNQYFTFVACEEPDK-----------EKIEEYITELH 69

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLV 138
            +K   +++KR ++ +K++  YL++ ++  ES    ++   K++  LPR +  ++   L+
Sbjct: 70  -KKYKQKTVKRKIASVKAYYSYLEENELIKESPFRKIKVKFKENLILPRIIPREEIEHLL 128

Query: 139 DNV--LLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +++   L  + ET +    R+ A++ L +  G R+ E  ++  +N+  +   +++ GKG 
Sbjct: 129 NHMYGCLQQASETVYKYCLRDVAVIELFFATGARVYEISNIRAENVNLNTGLIQLMGKGA 188

Query: 196 KIRIVPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K R V +   SV   + +YY        +      F   RG        +  +++     
Sbjct: 189 KERYVQIGSTSVLNILRKYY--AENRAAIKKSGYFFVNGRGNRYTEQSIRLMLKKYTAQA 246

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+  + T H  RHSFAT+L+  G D+  +Q ILGH  + TTQIY +V ++       EI 
Sbjct: 247 GIERNITPHMFRHSFATYLIEEGVDISCVQRILGHSSIKTTQIYIHVAARKQA----EIL 302

Query: 315 DQTHP 319
              HP
Sbjct: 303 RDMHP 307


>gi|27497173|gb|AAN64203.1| Int [Photorhabdus luminescens]
          Length = 465

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 159/338 (47%), Gaps = 27/338 (7%)

Query: 2   EGNNLPEIVSFELLKERQN---WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI 58
           E +  P+ +       RQ+   WL+ ++ + GLS+ T +SYE    + L F+ +   E  
Sbjct: 129 ETHGQPDAIPARFATLRQHLAAWLEAVQGQ-GLSERTQESYE---ERLLPFVTWC--EAR 182

Query: 59  TIQTIRQLSYTEIRAFI----SKRRT--QKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
            + T  Q+S   + ++     S R+T  Q     S +  LS ++ + ++L +R     + 
Sbjct: 183 GVMTAPQVSLPLLESYQRWLRSYRKTNGQPYSPGSQRDRLSVLRQWFRWLLQRHHILYNP 242

Query: 113 ILNMRNLKKSNSLP-RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
           + ++   K+   LP + +NE +  T++    + T         RN  IL +L+  G+R  
Sbjct: 243 VDSLVLPKEEKRLPAQVMNEDETHTVLAAANIDTL-----TGLRNRVILEVLWSTGIRRM 297

Query: 172 EALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
           E  +L    +   +  + + QGKG+K R+VP+       +  +  + P          LF
Sbjct: 298 EVANLLLSEVDFGRGVVLVRQGKGNKDRVVPIGEQALHWLSRWLSVRPQLTRRGDSGHLF 357

Query: 231 RGIRGKPLNPGVF-QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
              +G+ L  G   Q     +R+   L      H  RHS AT +L NG D R IQ+ILGH
Sbjct: 358 ITRKGRGLARGTLTQIAADSIRKQAQLAKPGACHLFRHSMATQMLENGADTRHIQAILGH 417

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
            +L TTQIYT V   +    + ++++QTHP+  + ++K
Sbjct: 418 EKLETTQIYTRVAIGH----LKKVHEQTHPAERKPEQK 451


>gi|261880904|ref|ZP_06007331.1| tyrosine recombinase XerD [Prevotella bergensis DSM 17361]
 gi|270332412|gb|EFA43198.1| tyrosine recombinase XerD [Prevotella bergensis DSM 17361]
          Length = 292

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 139/306 (45%), Gaps = 23/306 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L+ E   S LT++SY  D + F +F               QLS+  + + + + 
Sbjct: 3   EKFLNYLQFELCRSPLTVESYRRDLQAFEVFFRNLNG---------QLSWESVDSDVIRD 53

Query: 79  RTQKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             + + DR     S+ R LS ++S  ++    ++        +   KK   LP+ L E +
Sbjct: 54  WMEGMMDRGNNAASVNRRLSALRSLYRFALSHQLVARDPARCIDGPKKQKPLPQFLKENE 113

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D++   + ++    D R   I+   Y  G+R+SE + L  ++       L++ GK
Sbjct: 114 MDRLLDDMEWGSGYK----DVRAKTIITTFYETGIRLSELVGLDDESADFHNHQLKVTGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K RI+P    + K +  + +    ++       LF    G  +     ++ ++     
Sbjct: 170 GNKQRIIPFGDELEKTLRWFVETRNREVERTGN-ALFVTEEGVRMTSQQVRQEVKARLAQ 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +      T H LRH+FAT +L++G  L S++ +LGH  +STT+IYT+   +     + + 
Sbjct: 229 VCTLKKLTPHVLRHTFATTMLNHGAGLESVKRLLGHESVSTTEIYTHTTFEQ----LKQA 284

Query: 314 YDQTHP 319
           Y   HP
Sbjct: 285 YKDAHP 290


>gi|53712683|ref|YP_098675.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52215548|dbj|BAD48141.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 383

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 94/190 (49%), Gaps = 23/190 (12%)

Query: 120 KKSNSLPRALNE---KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           K+  SLP  L++   K+ L  + N+  H              ++ L+Y  GLR SE L+L
Sbjct: 199 KEYKSLPEVLSKNEIKRILAQISNIKHH-------------CMISLVYSAGLRRSELLNL 245

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRG 235
           TPQ+I  +  ++RI GKG K R   L P + + +  Y+           Q  LF G   G
Sbjct: 246 TPQDINSETMSVRIMGKGKKCRYSLLSPKLLEELRHYFR------EYRPQKWLFEGETPG 299

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           +  +     + +++     G+      H LRHSFATHLL  G DL +IQ +LGH  + TT
Sbjct: 300 EQYSASALVKVLKEAAHRAGIKHRVHVHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTT 359

Query: 296 QIYTNVNSKN 305
            IY +V+S +
Sbjct: 360 TIYLHVSSAH 369


>gi|315608575|ref|ZP_07883559.1| integrase/recombinase [Prevotella buccae ATCC 33574]
 gi|315249746|gb|EFU29751.1| integrase/recombinase [Prevotella buccae ATCC 33574]
          Length = 343

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 147/306 (48%), Gaps = 22/306 (7%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQTI--RQLSYTEIRAFISKRRTQ-KI 83
           ERG+S  TL+SY      F + L +  E +KI  + I  + L+      F+   +T+ K 
Sbjct: 22  ERGVSHHTLRSY---AYTFDLMLDYMLEVKKIPAERIELKHLTRDCTTGFLDWLQTERKC 78

Query: 84  GDRSLKRSLSGIKSFLKYLKK---RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            D +    L+ I +F KYL+    ++I     I+ ++   K +    +L+ +   TL+  
Sbjct: 79  TDNTRNARLAAIHAFCKYLQYEDIKRIGCWQQIMTIKAKHKVSGTISSLSIEAMKTLLAE 138

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRI 199
           +   T         R+ AIL LLY  G R+ E ++LTP ++ ++  + + + GKG K R+
Sbjct: 139 IPTDTMQ-----GRRHLAILSLLYESGARVQELINLTPNDLSLELPAYVTLFGKGRKKRV 193

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQ---RYIRQLR-RYL 254
           VPL   +   +  Y      DL    +  LF   RG  L N G+      Y   +R ++ 
Sbjct: 194 VPLQKRLVSIMRLYLAEHKLDLPGREKRHLFYNNRGAKLSNSGIAHIITLYANDVRVKHP 253

Query: 255 GL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GL P   + H+ RHS A HLL  G +L  I+ ILGH  + TT+IY + +SK   D + + 
Sbjct: 254 GLLPDKISPHSFRHSKAMHLLQAGVNLVYIRDILGHASIKTTEIYAHADSKQKRDALEKA 313

Query: 314 YDQTHP 319
           Y    P
Sbjct: 314 YANITP 319


>gi|254478707|ref|ZP_05092078.1| tyrosine recombinase XerD [Carboxydibrachium pacificum DSM 12653]
 gi|214035394|gb|EEB76097.1| tyrosine recombinase XerD [Carboxydibrachium pacificum DSM 12653]
          Length = 290

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 140/301 (46%), Gaps = 23/301 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L+  + LSK TL+SY  D  QFL ++    E  I   + ++ +      F+   + 
Sbjct: 9   FLEFLKKNKRLSKNTLESYSRDVEQFLTYM---NEHGINFCSAKKSTIVNYLYFL---KQ 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     ++ R+LS IK+F  YL  +K   E     +   K     P  L  +Q      +
Sbjct: 63  QGKSQATISRALSSIKAFYHYLFAKKKIEEDPSYGINAPKVEKKEPVTLTVEQV-----D 117

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +LL           R+ A++ L+Y  GL++SE +SL  +++  + ++  I  +  K R++
Sbjct: 118 MLLSFDFGKDEKGLRDKALIELMYASGLKVSEVISLKIEDV--NLASGYIVVRSGKERVI 175

Query: 201 PLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           P+      A+ EY +    P       +  LF  +RGK L      + I++    +   L
Sbjct: 176 PIGSYAVAALQEYIEKGRKP----RKGEKALFLNLRGKRLTRQGCWKIIKEYADKISPGL 231

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           S T + LR SFA H+L NG DL+++Q +LG+          N+ S      M E+Y++ H
Sbjct: 232 SLTPNILRKSFAQHMLQNGADLKTVQEMLGY----EANFGNNLLSLVSRSKMKEVYNKFH 287

Query: 319 P 319
           P
Sbjct: 288 P 288


>gi|167752616|ref|ZP_02424743.1| hypothetical protein ALIPUT_00870 [Alistipes putredinis DSM 17216]
 gi|167659685|gb|EDS03815.1| hypothetical protein ALIPUT_00870 [Alistipes putredinis DSM 17216]
          Length = 368

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 94/190 (49%), Gaps = 23/190 (12%)

Query: 120 KKSNSLPRALNE---KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           K+  SLP  L++   K+ L  + N+  H              ++ L+Y  GLR SE L+L
Sbjct: 184 KEYKSLPEVLSKNEIKRILAQISNIKHH-------------CMISLVYSAGLRRSELLNL 230

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRG 235
           TPQ+I  +  ++RI GKG K R   L P + + +  Y+           Q  LF G   G
Sbjct: 231 TPQDINSETMSVRIMGKGKKCRYSLLSPKLLEELRHYFR------EYRPQKWLFEGETPG 284

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           +  +     + +++     G+      H LRHSFATHLL  G DL +IQ +LGH  + TT
Sbjct: 285 EQYSASALVKVLKEAAHRAGIKHRVHVHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTT 344

Query: 296 QIYTNVNSKN 305
            IY +V+S +
Sbjct: 345 TIYLHVSSAH 354


>gi|298206637|ref|YP_003714816.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559]
 gi|83849267|gb|EAP87135.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559]
          Length = 265

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 88/280 (31%), Positives = 133/280 (47%), Gaps = 30/280 (10%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           E+ L++ T+  Y   TR FL +L+    ++IT   +++ +Y  I            G   
Sbjct: 3   EKRLAQNTIDIYTEVTRIFLRYLSLKQADEITNIWVQRFNYDYIIG-------NGFGVAY 55

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             + ++GIK F+ +L K  +     +  +   KK   LP  L+ K+ ++ + NV+ +  H
Sbjct: 56  QNQCINGIKKFVSFLGKPLV-----LDTLVRPKKPQKLPVVLS-KEEISQLFNVINNLKH 109

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
           +               Y  GLRI EAL LTP+ I   +  +RI Q KG+K R   L  S 
Sbjct: 110 KALLALL---------YSAGLRIGEALQLTPEAIDSKRMLIRIEQAKGNKDRYTLLSESF 160

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTL 265
                    L  +      +  LF G  G        Q+ +++  R  G+  +  T HTL
Sbjct: 161 LTL------LRMYYKKYKPKTYLFEGQNGGAYTSSSAQKVLKRALRDAGITRIGVTLHTL 214

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           RHSFATHLL +G DLR IQ +LGH    TT IYT+V+SK+
Sbjct: 215 RHSFATHLLESGTDLRYIQELLGHNSPKTTMIYTHVSSKS 254


>gi|224025068|ref|ZP_03643434.1| hypothetical protein BACCOPRO_01802 [Bacteroides coprophilus DSM
           18228]
 gi|298377207|ref|ZP_06987161.1| integrase [Bacteroides sp. 3_1_19]
 gi|224018304|gb|EEF76302.1| hypothetical protein BACCOPRO_01802 [Bacteroides coprophilus DSM
           18228]
 gi|298266191|gb|EFI07850.1| integrase [Bacteroides sp. 3_1_19]
          Length = 340

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 145/292 (49%), Gaps = 18/292 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTI--RQLSYTEIRAFISK-RRT 80
           L +E G S  T++ Y      F++F+ + Y  E I  + +  ++++   +  F+     T
Sbjct: 16  LTMECGCSYQTVKQYSAT---FMLFIQYMYKIELIAPEKLFLKEITKERVLGFLHWLEET 72

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD- 139
           +K    +    LS ++SF KYL+ R++   +    + ++K+  +      E   LT    
Sbjct: 73  RKCSISTRNNRLSALRSFFKYLQYREVKGMAYWQAILSIKQKRT---PFKEMSYLTTEGV 129

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIR 198
             LL     +     R+  ++ LLY  G R+ E ++LTP+NI + + +T+++ GKG+KIR
Sbjct: 130 QALLEQPDLSTRKGRRDFILMGLLYDSGARVQEIINLTPENIRLGETTTVKLHGKGNKIR 189

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP----GVFQRYIRQLRR-Y 253
           +VPL  +  K +  Y +      +     PLF   +G+ L       + +R+ +  R+ Y
Sbjct: 190 VVPLSTNQVKNLRLYMEENNLFASQYRCHPLFPNPKGERLTRMAVLDIVKRHAKNARKQY 249

Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           L L P + + HT RHS A H+L  G +L  I+  LGH   +TT+IY   + K
Sbjct: 250 LELIPSNISCHTFRHSKAMHMLEAGINLVYIRDFLGHASTTTTEIYARASEK 301


>gi|262173546|ref|ZP_06041223.1| integron integrase IntI4 [Vibrio mimicus MB-451]
 gi|261890904|gb|EEY36891.1| integron integrase IntI4 [Vibrio mimicus MB-451]
          Length = 320

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 89/188 (47%), Gaps = 38/188 (20%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206
           +D +      LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V     L P +
Sbjct: 118 VDPKYQLPAKLLYGSGLRLMECIRLRIQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 177

Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233
           ++ I     YYD                        P++   +   P F+         +
Sbjct: 178 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 237

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N  V QR +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH  + 
Sbjct: 238 RRHHMNETVLQRTVRKSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 297

Query: 294 TTQIYTNV 301
           TTQIY +V
Sbjct: 298 TTQIYAHV 305


>gi|254225618|ref|ZP_04919226.1| site-specific recombinase IntI4 [Vibrio cholerae V51]
 gi|125621833|gb|EAZ50159.1| site-specific recombinase IntI4 [Vibrio cholerae V51]
          Length = 320

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 91/188 (48%), Gaps = 38/188 (20%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206
           +D ++   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V     L P +
Sbjct: 118 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 177

Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233
           ++ I     YYD                        P++   +   P F+         +
Sbjct: 178 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 237

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N  V Q+ +R+  +   +  + T HTLRHSFATHLL  G D+R++Q  LGH  + 
Sbjct: 238 RRHHINETVLQKAVRRSAQEARIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHSDVK 297

Query: 294 TTQIYTNV 301
           TTQIYT+V
Sbjct: 298 TTQIYTHV 305


>gi|257080952|ref|ZP_05575313.1| prophage lambdaba03 [Enterococcus faecalis E1Sol]
 gi|256988982|gb|EEU76284.1| prophage lambdaba03 [Enterococcus faecalis E1Sol]
          Length = 301

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 133/276 (48%), Gaps = 18/276 (6%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +G SK+T+++Y+   R    F      E        Q+    I+++I   + +++   ++
Sbjct: 17  KGFSKITIKNYKSKLRNTANFFKSINVEP------SQIEKKHIKSWIIDMQEKEMQASTI 70

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE---KQALTLVDNVLLHT 145
             S+S +K    Y+   K    +  +++  LK+   +   LN+   KQ LT+        
Sbjct: 71  NVSVSRLKKLFDYMLIEKYIEYNPFVDIERLKEQRKVIYPLNDYEIKQMLTVA------K 124

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
            H  K I  RN  IL L+  CGLRISE   +  ++IM++Q  +R + K +K R V + P 
Sbjct: 125 KHPYKHIAQRNVVILMLMIECGLRISEVCEIRDEDIMNNQIIIR-KSKNNKDRAVAVSPI 183

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAH 263
           ++K I++Y+ +      L           GK LN     + ++++++ + +   +  + H
Sbjct: 184 LKKEIIKYHRIKKRKYGLLEGNTFIVSNLGKKLNEKSIWQIMQEIKKQIDIRDCVRFSGH 243

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           TLRH++A+  L NG D+ ++   +GH  +  TQ Y 
Sbjct: 244 TLRHTYASMQLRNGLDIYTLSLNMGHSSIEMTQRYV 279


>gi|189459539|ref|ZP_03008324.1| hypothetical protein BACCOP_00163 [Bacteroides coprocola DSM 17136]
 gi|189465731|ref|ZP_03014516.1| hypothetical protein BACINT_02092 [Bacteroides intestinalis DSM
           17393]
 gi|332877255|ref|ZP_08445004.1| integron integrase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|189433791|gb|EDV02776.1| hypothetical protein BACCOP_00163 [Bacteroides coprocola DSM 17136]
 gi|189433995|gb|EDV02980.1| hypothetical protein BACINT_02092 [Bacteroides intestinalis DSM
           17393]
 gi|332684845|gb|EGJ57693.1| integron integrase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 372

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 16/204 (7%)

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           +K+  ++ +  E     +   K+  +LP  L++++   ++D  +          D R   
Sbjct: 162 IKFYYEKVLGQERRCYKVNRAKREKTLPDVLSKEEIKKILDATV---------TDLRFFC 212

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC 217
           +  +LY  GLRISE L L P +I + +S +R+ QGKG K R   L   + K + EY  L 
Sbjct: 213 MFSILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSKPLMKKLTEYNRL- 271

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
                   ++ LF    G+P    +  + ++   R  G+      H LRHSFATHLL  G
Sbjct: 272 -----YKPKVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQG 326

Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301
            D++ ++ ++GH  + TT+ Y ++
Sbjct: 327 TDIKIVKELMGHNNIKTTERYVHI 350


>gi|86142374|ref|ZP_01060884.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
 gi|85831126|gb|EAQ49583.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
          Length = 405

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 128/277 (46%), Gaps = 30/277 (10%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           LS+ TL+ Y   T QFL        E + ++  R      I   I+ RR      R    
Sbjct: 125 LSEQTLKVYGNFTVQFLNHYKNKPIENLNVRAFRAF----IEEVIAFRRYSISSHRQCIS 180

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           +L  +   L++ K       ++   ++  KK   LP  L+ K+ + L+            
Sbjct: 181 ALKHLSILLEFPK-------AHFDGLQRPKKDKKLPVVLSRKEVIDLLRAT--------- 224

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKA 209
             + ++  IL LLY  GLRI E L+L    I  D+  + I+ GKG K R V L  +V   
Sbjct: 225 -PNLKHRTILALLYSAGLRIGELLALRCDAIDLDRMQVHIKKGKGRKDRTVKLAQAVVPL 283

Query: 210 ILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           +L Y +   P          L  G  G+  + G  + ++++     G+  + T HTLRHS
Sbjct: 284 LLNYMESYAPTHY-------LIPGRDGQGYSAGAIRTFLKKSCTRAGIKKAVTPHTLRHS 336

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +ATH++ +G  LR IQ +LGH +  TT IYT+V+ ++
Sbjct: 337 YATHMMDHGVALRHIQELLGHAKPETTMIYTHVSQQD 373


>gi|28898639|ref|NP_798244.1| site-specific recombinase IntIA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|28806857|dbj|BAC60128.1| site-specific recombinase IntIA [Vibrio parahaemolyticus RIMD
           2210633]
          Length = 320

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 136/314 (43%), Gaps = 65/314 (20%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
           T++SY    ++F++F  F    K++    IR LS+  I         +K+  ++   +L+
Sbjct: 22  TIESYLFWIKRFIVFHQFAHPSKLSEDDVIRFLSHLAI--------DEKVAVKTQALALN 73

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV--DNVLLHTSHETKW 151
            I    +   K  ++     L+MR         ++L EK+   ++  D V     H    
Sbjct: 74  AISFLYRDFFKTPLS-----LDMR-------FQKSLTEKKLPVVLTRDEVRRFVQH---- 117

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL-------- 202
           ID R    + LLYG GLRI E L L  Q+I  D   +R+ QGKG K R V L        
Sbjct: 118 IDPRYKLHIQLLYGSGLRIMECLRLRIQDIDYDYGAVRVWQGKGGKNRTVTLAKELHEPL 177

Query: 203 ----------------LPS-----VRKAILEYYDLCPFDLNLNIQLPLFR--------GI 233
                           +P      + + +   Y     D N +   P  +         +
Sbjct: 178 KSQMNFARNYYFKDRHVPGYAGVYISEGLRRKYPNAELDFNWHFLFPSNKLSVDKETGQL 237

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N    QR +++      +  + T HTLRHSFATHLL +G D+R++Q  LGH  + 
Sbjct: 238 RRHHINESAIQRAVKRSALDANIEKTVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVK 297

Query: 294 TTQIYTNVNSKNGG 307
           TTQIYT+V  +  G
Sbjct: 298 TTQIYTHVIERGAG 311


>gi|293371016|ref|ZP_06617558.1| integron integrase [Bacteroides ovatus SD CMC 3f]
 gi|292633946|gb|EFF52493.1| integron integrase [Bacteroides ovatus SD CMC 3f]
          Length = 368

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 94/190 (49%), Gaps = 23/190 (12%)

Query: 120 KKSNSLPRALNE---KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           K+  SLP  L++   K+ L  + N+  H              ++ L+Y  GLR SE L+L
Sbjct: 184 KEYKSLPEVLSKNEIKRILAQISNIKHH-------------CMISLVYSAGLRRSELLNL 230

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRG 235
           TPQ+I  +  ++RI GKG K R   L P + + +  Y+           Q  LF G   G
Sbjct: 231 TPQDINSETMSVRIMGKGKKCRYSLLSPKLLEELRHYFR------EYRPQKWLFEGETPG 284

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           +  +     + +++     G+      H LRHSFATHLL  G DL +IQ +LGH  + TT
Sbjct: 285 EQYSASALVKVLKEAAHRAGIKHRVHVHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTT 344

Query: 296 QIYTNVNSKN 305
            IY +V+S +
Sbjct: 345 TIYLHVSSAH 354


>gi|327440195|dbj|BAK16560.1| integrase [Solibacillus silvestris StLB046]
          Length = 313

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 135/290 (46%), Gaps = 24/290 (8%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEE------------KITIQTIRQLSYTEIRAFISK 77
           G S+ T + YE D   F+ FL    E+             ITI  I+++S  ++  F+  
Sbjct: 19  GKSQRTRKEYEYDLILFMRFLKAIEEDIPLDRLHTIDISTITIDQIKEVSLEDLYLFMEY 78

Query: 78  RRTQKIGDRSLK-RSLSGIKSFLKYLK-KRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
              Q+    S + R ++ +KSF KYLK KR++  E+   ++   K     P  LN  +A 
Sbjct: 79  CEVQRGNSSSARARKVATLKSFFKYLKGKRRLIDENPAEHLETPKIGRRQPVYLNYNEAK 138

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
             +  V      +T+   AR+  ++      G+R+SE  SL   +I  +   L + GKG+
Sbjct: 139 DFIGAV------QTQSYSARDECMMVFFLNLGIRVSELCSLNIDSI--NGRMLTVIGKGN 190

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R V L  +   A L+ Y         + + PLF   +G         R ++ +     
Sbjct: 191 KERHVYLNDACMNA-LDKYLQERHAYKGDGKEPLFISQKGTRFARQSIARIVKVINANSH 249

Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            P    T H LRH+ AT +  +G D+R++Q ILGH  ++TTQIYT++  +
Sbjct: 250 SPKEKLTPHKLRHTSATMMYKSGADIRTLQHILGHSSVATTQIYTHIEDE 299


>gi|329963595|ref|ZP_08301073.1| integron integrase [Bacteroides fluxus YIT 12057]
 gi|328528500|gb|EGF55473.1| integron integrase [Bacteroides fluxus YIT 12057]
          Length = 372

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 16/204 (7%)

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           +K+  ++ +  E     +   K+  +LP  L++++   ++D  +          D R   
Sbjct: 162 IKFYYEKVLGQERRCYKVNRAKREKTLPDVLSKEEIKKILDATV---------TDLRFFC 212

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC 217
           +  +LY  GLRISE L L P +I + +S +R+ QGKG K R   L   + K + EY  L 
Sbjct: 213 MFSILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSKPLMKKLTEYNRL- 271

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
                   ++ LF    G+P    +  + ++   R  G+      H LRHSFATHLL  G
Sbjct: 272 -----YKPKVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQG 326

Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301
            D++ ++ ++GH  + TT+ Y ++
Sbjct: 327 TDIKIVKELMGHNNIKTTERYVHI 350


>gi|289806186|ref|ZP_06536815.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 164

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 83/149 (55%), Gaps = 2/149 (1%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            R+ A+L ++YG GLR+SE + L  +++  D   + + GKG K R +P+  +    I  +
Sbjct: 16  VRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHW 75

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            DL    L  + +  LF    GK ++    Q+   +     GL      H LRHSFATH+
Sbjct: 76  LDLRG--LFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHM 133

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           L + GDLR +Q +LGH  LSTTQIYT+++
Sbjct: 134 LESSGDLRGVQELLGHANLSTTQIYTHLD 162


>gi|150390005|ref|YP_001320054.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
 gi|149949867|gb|ABR48395.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
          Length = 354

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 90/295 (30%), Positives = 142/295 (48%), Gaps = 45/295 (15%)

Query: 22  LQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           LQ LE +   +G S  T +SY    ++FL F+     E +T Q + +  Y  +       
Sbjct: 81  LQQLEKQFTLKGYSPKTKKSYIGHVKRFLGFIN-NKPEVLTKQDVEKYMYHLLNV----- 134

Query: 79  RTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             Q+       ++LS IK + ++ LKK K+     + ++   KK  +LP  L++++ L++
Sbjct: 135 --QENSHAFANQALSAIKFYYQHSLKKDKV-----LYDLPRPKKEKTLPNILSQREVLSI 187

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
           +D+V           + ++ +IL L Y  GLR+ E + L   +I  D+  + + QGKG K
Sbjct: 188 LDSV----------NNIKHKSILLLTYSAGLRVGEVVRLKVGDIDSDRMLIHVRQGKGRK 237

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKP---LNPGVFQRYIRQL 250
            R   +L  V  + L  Y +        I+ P   LF G  GK    L     Q+     
Sbjct: 238 DRYT-ILSEVALSTLRKYAM--------IEKPKDWLFPG--GKENCFLTERSVQKTFSVA 286

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +   +    + H+LRHSFATHLL  G DLR IQ +LGH    TT+IYT+V+  N
Sbjct: 287 CKRAKVKKHASVHSLRHSFATHLLEGGTDLRYIQELLGHSSSKTTEIYTHVSVAN 341


>gi|325971099|ref|YP_004247290.1| tyrosine recombinase xerC [Spirochaeta sp. Buddy]
 gi|324026337|gb|ADY13096.1| Tyrosine recombinase xerC [Spirochaeta sp. Buddy]
          Length = 297

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 137/307 (44%), Gaps = 36/307 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITI-QTIRQLSYTEIRAFISKRRTQKIGDRS 87
           R LS+ TL +YE   R  L   +++T  ++ + +  R+ +   +R  +   +       S
Sbjct: 18  RSLSEHTLCAYE---RDLLQLQSYFTSLQVPLLEASREDARMFVRYLV---KDSSYAQSS 71

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           + R +S  +SF   L K +    +    +   ++ + LP  L  ++   L+         
Sbjct: 72  INRKISCARSFYSSLLKAERIASNPFSLIAVHRQMDRLPSVLTVEEVTALLSLPY----- 126

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
              +   R+  +  LLY  G RISE LS+   +I  +   +R+ GKG+K R V       
Sbjct: 127 -ADFPSTRDMTVFTLLYDTGCRISELLSIKESDIEWETKRVRVLGKGNKSRYV------- 178

Query: 208 KAILEYYDLCPFDLNLNIQLP--------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
                + D C   L+  + L         L    +GK L            R  LG    
Sbjct: 179 ----FFTDHCASLLSSYLSLKHERFSNPLLICSNKGKQLPMSTVGSMFAVYRSRLGWQKP 234

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T H LRH++ATHLL NG D+R +Q +LGH  +STTQIYT+V+ +     +  +Y  +HP
Sbjct: 235 FTPHVLRHTYATHLLDNGADIRLVQELLGHQSISTTQIYTHVSKER----LAHVYAYSHP 290

Query: 320 SITQKDK 326
              ++D+
Sbjct: 291 HGRKQDE 297


>gi|294646923|ref|ZP_06724544.1| integron integrase [Bacteroides ovatus SD CC 2a]
 gi|294810786|ref|ZP_06769432.1| integron integrase [Bacteroides xylanisolvens SD CC 1b]
 gi|292637868|gb|EFF56265.1| integron integrase [Bacteroides ovatus SD CC 2a]
 gi|294441974|gb|EFG10795.1| integron integrase [Bacteroides xylanisolvens SD CC 1b]
          Length = 368

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 94/190 (49%), Gaps = 23/190 (12%)

Query: 120 KKSNSLPRALNE---KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           K+  SLP  L++   K+ L  + N+  H              ++ L+Y  GLR SE L+L
Sbjct: 184 KEYKSLPEVLSKNEIKRILAQISNIKHH-------------CMISLVYSAGLRRSELLNL 230

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRG 235
           TPQ+I  +  ++RI GKG K R   L P + + +  Y+           Q  LF G   G
Sbjct: 231 TPQDINSETMSVRIMGKGKKCRYSLLSPKLLEELRHYFR------EYRPQKWLFEGETPG 284

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           +  +     + +++     G+      H LRHSFATHLL  G DL +IQ +LGH  + TT
Sbjct: 285 EQYSASALVKVLKEAAHRAGIKHRVHVHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTT 344

Query: 296 QIYTNVNSKN 305
            IY +V+S +
Sbjct: 345 TIYLHVSSAH 354


>gi|317477406|ref|ZP_07936636.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906434|gb|EFV28158.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 239

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 16/204 (7%)

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           +K+  ++ +  E     +   K+  +LP  L++++   ++D  +          D R   
Sbjct: 29  IKFYYEKVLGQERRCYKVNRAKREKTLPDVLSKEEIKKILDATV---------TDLRFFC 79

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC 217
           +  +LY  GLRISE L L P +I + +S +R+ QGKG K R   L   + K + EY  L 
Sbjct: 80  MFSILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSKPLMKKLTEYNRL- 138

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
                   ++ LF    G+P    +  + ++   R  G+      H LRHSFATHLL  G
Sbjct: 139 -----YKPKVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQG 193

Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301
            D++ ++ ++GH  + TT+ Y ++
Sbjct: 194 TDIKIVKELMGHNNIKTTERYVHI 217


>gi|222446012|ref|ZP_03608527.1| hypothetical protein METSMIALI_01661 [Methanobrevibacter smithii
           DSM 2375]
 gi|261349449|ref|ZP_05974866.1| integrase-recombinase protein [Methanobrevibacter smithii DSM 2374]
 gi|222435577|gb|EEE42742.1| hypothetical protein METSMIALI_01661 [Methanobrevibacter smithii
           DSM 2375]
 gi|288861812|gb|EFC94110.1| integrase-recombinase protein [Methanobrevibacter smithii DSM 2374]
          Length = 302

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 94/183 (51%), Gaps = 9/183 (4%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKW---IDARNSAILYLLYGCGLRISEALSL 176
           K+  S P  L +K+   L+D++    + ++ +      R+  I+ LLY  GLR+SE ++L
Sbjct: 121 KRIKSPPNFLTQKEVKQLLDSITWDENSDSDFRIITKLRDKLIVTLLYSSGLRVSELINL 180

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
           T  N+  +   L I GK +  R++ L  S ++ I +Y +      N      L     G 
Sbjct: 181 TVDNVNFEGKQLSIVGKNNS-RVILLDESTKQLIQKYLEKRTQKSNY-----LVVNKSGN 234

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           PL P   Q  I++     G+    T H LRHS+ATHL   G +++ IQ +LGH  LSTTQ
Sbjct: 235 PLTPRYVQLMIKKYGNESGIEKKITPHILRHSYATHLFEQGVNIKIIQQLLGHSNLSTTQ 294

Query: 297 IYT 299
           IY+
Sbjct: 295 IYS 297


>gi|12831416|gb|AAK02074.1| site-specific recombinase IntIA [Vibrio metschnikovii]
          Length = 320

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 88/188 (46%), Gaps = 38/188 (20%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210
           +D +    + LLYG GLR+ E + L  Q+I  D   LRI QGKG K R V L   +   I
Sbjct: 118 VDPKYQLHIKLLYGSGLRLMECVRLRVQDIDFDYGALRIWQGKGGKNRTVTLAKELHPLI 177

Query: 211 LE-------YYD----------------------LCPFDLNLNIQLPL--------FRGI 233
            E       YYD                        PF+ + +   P            +
Sbjct: 178 KEQISLAKRYYDKDMEAKGYGGVWLPNALNSKYPTAPFEFHWHYLFPSNALSVDQESNLL 237

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N    QR +++  +   +  S + HTLRHSFATHLL +G D+R++Q  LGH  +S
Sbjct: 238 RRHHINETSLQRTVKRAVKEAEIKKSVSCHTLRHSFATHLLESGADIRTVQEQLGHADVS 297

Query: 294 TTQIYTNV 301
           TTQIYT+V
Sbjct: 298 TTQIYTHV 305


>gi|85706620|ref|ZP_01037713.1| probable integrase [Roseovarius sp. 217]
 gi|85669032|gb|EAQ23900.1| probable integrase [Roseovarius sp. 217]
          Length = 175

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/148 (41%), Positives = 78/148 (52%), Gaps = 9/148 (6%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDL 216
           A L   Y  GLR SEA+SL   +I  D+  L+++ GKG K R V L P +   +  Y+ L
Sbjct: 14  AALTTAYAAGLRASEAVSLKVTDIDSDRMVLQVRHGKGAKDRTVMLSPQLLGILRTYWRL 73

Query: 217 C-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
             P D        LF G   KP++  V     R   +  GL    + HTLRHS ATHLL 
Sbjct: 74  ARPKDW-------LFPGRGDKPIDVQVLHSTCRSATKAAGLTKKVSVHTLRHSSATHLLE 126

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +G D+R IQ +LGH  LSTT  YT V +
Sbjct: 127 SGVDIRVIQVLLGHSNLSTTARYTQVAT 154


>gi|115345577|ref|YP_771759.1| tyrosine recombinase [Roseobacter denitrificans OCh 114]
 gi|115292898|gb|ABI93351.1| tyrosine recombinase [Roseobacter denitrificans OCh 114]
          Length = 302

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 134/283 (47%), Gaps = 21/283 (7%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDR 86
           ERG+   TL++Y  D R F  F   Y            LS  +I A+ S  R +      
Sbjct: 16  ERGVGNHTLRAYAQDLRTFARFTKEY-------HLADPLSKDDILAYHSHLRDELHAKPA 68

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLVDNVLLHT 145
           S++R L  +KS+  +   R     S   ++R +++    LPR ++ +     +  VL   
Sbjct: 69  SIERRLVTLKSYFAWRADRNSALPSPFADVRISVRIPRRLPRPVDRET----LKAVLQSE 124

Query: 146 SHETKWIDARNSA---ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
           +  T    A       ++ LL   GLRISE  +L   ++  D S + ++GKG+K R+V +
Sbjct: 125 TGPTGAQPADQEVTILMIKLLIVTGLRISELTTLKICDVTADASQMIVRGKGNKERMVFV 184

Query: 203 LPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
             +  + +   Y  D    D   +++ PLF    G+ L    F++ +R L   LG+    
Sbjct: 185 PNAELQEMFRRYCADRVRHD---SLKSPLFLNAVGRRLRSQTFRKRLRVLSHRLGITPHL 241

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           T H  RHS AT L+  G D+R +Q++LGH  L TT+IY  V++
Sbjct: 242 TPHRFRHSAATLLIEEGTDIRMVQALLGHASLRTTEIYVRVSN 284


>gi|255994142|ref|ZP_05427277.1| integrase/recombinase XerD [Eubacterium saphenum ATCC 49989]
 gi|255993810|gb|EEU03899.1| integrase/recombinase XerD [Eubacterium saphenum ATCC 49989]
          Length = 298

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 147/310 (47%), Gaps = 24/310 (7%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K+ +N+   LE +R LS  T+ +Y  D + F IF+  Y +    I+  +++  T+I  F+
Sbjct: 5   KDMKNFFVYLEKDRSLSTSTIGAYHEDLQAFHIFV--YGK---GIKGYKRVKNTDIDDFV 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
              + Q     +++R +S +++F  YL       ++  L +    K+  L +   +   +
Sbjct: 60  ENLKRQDYAPATIRRRISSVRAFYNYLVNTGAMRKNPTLGL----KAPKLNKKTIDYFTV 115

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
             +D +L   + +T     R+ A+L L+Y  GL+++E L L   ++ D ++ L I     
Sbjct: 116 EEIDLLLASVTDDTDS-GIRDKAVLELMYAAGLQLTELLELKMSDV-DIRAGL-ITAGLK 172

Query: 196 KIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           K R++P+    RKA+ +Y               +   PLF     K  +     +  +  
Sbjct: 173 KRRVIPIGSHARKAVEKYISDVRKLKFSKLSKKDASSPLFVNYLNKKFSRQGIWKIFKDY 232

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDW 309
               G+ +  T + LR+SFA H+L NG D++++Q ++GH  +S T Q Y  + S      
Sbjct: 233 AAKTGI-IKFTPNMLRNSFAVHMLQNGADIKTVQELMGHENISITKQYYIEIPSST---- 287

Query: 310 MMEIYDQTHP 319
              +YD+THP
Sbjct: 288 -KLVYDKTHP 296


>gi|283458429|ref|YP_003363053.1| site-specific recombinase XerD [Rothia mucilaginosa DY-18]
 gi|283134468|dbj|BAI65233.1| site-specific recombinase XerD [Rothia mucilaginosa DY-18]
          Length = 437

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 117/254 (46%), Gaps = 28/254 (11%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV- 141
           +G  S+ R+++ ++    +     I        +   K    LP+A++       V+++ 
Sbjct: 189 LGPNSIARTMAAVRGAHAFWVSALIVPTDPAAPVTPPKNVKRLPKAVS-------VEDIQ 241

Query: 142 -LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---------DDQSTL--- 188
            LL           RN AIL  LY  G R+SE L+    ++           +Q TL   
Sbjct: 242 RLLAVPDRETATGLRNRAILEFLYATGARVSEMLNADIDDVHFEGTLTDEDGNQITLPGY 301

Query: 189 -RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQR 245
            R+ GKG+K R+VP+    +KAI +Y       L  + +    LF   RG  L       
Sbjct: 302 VRLFGKGNKERLVPIGSYAQKAIQDYLVRARPSLVAHGKGTAALFVNGRGGRLGRQGAWL 361

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +++     GL    + H++RHSFATHLL  G D+R +Q +LGH  ++TTQ+YT V  + 
Sbjct: 362 ILKEAAEAAGLSSDFSPHSMRHSFATHLLQGGADIRVVQELLGHASIATTQVYTKVTPEG 421

Query: 306 GGDWMMEIYDQTHP 319
               +ME+Y   HP
Sbjct: 422 ----LMEVYRMAHP 431


>gi|153839218|ref|ZP_01991885.1| site-specific recombinase IntIA [Vibrio parahaemolyticus AQ3810]
 gi|308094780|ref|ZP_05892029.2| site-specific recombinase IntIA [Vibrio parahaemolyticus AN-5034]
 gi|308095642|ref|ZP_05907294.2| site-specific recombinase IntIA [Vibrio parahaemolyticus Peru-466]
 gi|308125806|ref|ZP_05777497.2| site-specific recombinase IntIA [Vibrio parahaemolyticus K5030]
 gi|308126623|ref|ZP_05911350.2| site-specific recombinase IntIA [Vibrio parahaemolyticus AQ4037]
 gi|149747246|gb|EDM58234.1| site-specific recombinase IntIA [Vibrio parahaemolyticus AQ3810]
 gi|308086647|gb|EFO36342.1| site-specific recombinase IntIA [Vibrio parahaemolyticus Peru-466]
 gi|308093266|gb|EFO42961.1| site-specific recombinase IntIA [Vibrio parahaemolyticus AN-5034]
 gi|308107453|gb|EFO44993.1| site-specific recombinase IntIA [Vibrio parahaemolyticus AQ4037]
 gi|308111500|gb|EFO49040.1| site-specific recombinase IntIA [Vibrio parahaemolyticus K5030]
          Length = 341

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 139/322 (43%), Gaps = 65/322 (20%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKRRTQKIGD 85
           + R  +  T++SY    ++F++F  F    K++    IR LS+  I         +K+  
Sbjct: 35  LTRYYANKTIESYLFWIKRFIVFHQFAHPSKLSEDDVIRFLSHLAI--------DEKVAV 86

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV--DNVLL 143
           ++   +L+ I    +   K  ++     L+MR         ++L EK+   ++  D V  
Sbjct: 87  KTQALALNAISFLYRDFFKTPLS-----LDMR-------FQKSLTEKKLPVVLTRDEVRR 134

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL 202
              H    ID R    + LLYG GLRI E L L  Q+I  D   +R+ QGKG K R V L
Sbjct: 135 FVQH----IDPRYKLHIQLLYGSGLRIMECLRLRIQDIDYDYGAVRVWQGKGGKNRTVTL 190

Query: 203 ------------------------LPS-----VRKAILEYYDLCPFDLNLNIQLPLFR-- 231
                                   +P      + + +   Y     D N +   P  +  
Sbjct: 191 AKELHEPLKSQMNFARNYYFKDRHVPGYAGVYISEGLRRKYPNAELDFNWHFLFPSNKLS 250

Query: 232 ------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
                  +R   +N    QR +++      +  + T HTLRHSFATHLL +G D+R++Q 
Sbjct: 251 VDKETGQLRRHHINESAIQRAVKRSALDANIEKTVTCHTLRHSFATHLLESGADIRTVQE 310

Query: 286 ILGHFRLSTTQIYTNVNSKNGG 307
            LGH  + TTQIYT+V  +  G
Sbjct: 311 QLGHTDVKTTQIYTHVIERGAG 332


>gi|260774302|ref|ZP_05883217.1| integron integrase IntI4 [Vibrio metschnikovii CIP 69.14]
 gi|260611263|gb|EEX36467.1| integron integrase IntI4 [Vibrio metschnikovii CIP 69.14]
          Length = 320

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 88/188 (46%), Gaps = 38/188 (20%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210
           +D +    + LLYG GLR+ E + L  Q+I  D   LRI QGKG K R V L   +   I
Sbjct: 118 VDPKYQLHIKLLYGSGLRLMECVRLRVQDIDFDYGALRIWQGKGGKNRTVTLAKELHPLI 177

Query: 211 LE-------YYD----------------------LCPFDLNLNIQLPL--------FRGI 233
            E       YYD                        PF+ + +   P            +
Sbjct: 178 KEQISLAKRYYDKDMETKGYGGVWLPNALNSKYPTAPFEFHWHYLFPSNALSVDQESNLL 237

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N    QR +++  +   +  S + HTLRHSFATHLL +G D+R++Q  LGH  +S
Sbjct: 238 RRHHINETSLQRTVKRAVKEAEIKKSVSCHTLRHSFATHLLESGADIRTVQEQLGHADVS 297

Query: 294 TTQIYTNV 301
           TTQIYT+V
Sbjct: 298 TTQIYTHV 305


>gi|219852288|ref|YP_002466720.1| integrase family protein [Methanosphaerula palustris E1-9c]
 gi|219546547|gb|ACL16997.1| integrase family protein [Methanosphaerula palustris E1-9c]
          Length = 292

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 108/223 (48%), Gaps = 24/223 (10%)

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           ++L R +S + SF ++L  +     + +  +   K      R L  +Q L L++++    
Sbjct: 76  KTLHRIISTLSSFYRFLYAQGAVAVNPVTGIDRPKIKRQELRYLKHRQVLKLIESMP--- 132

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
                    R+  ++ ++Y  G+R+SE   ++ ++I  D  T+RI+GKGDKIR V  +  
Sbjct: 133 -------SVRDQLVVRMIYATGVRVSELCGISIEHIDFDDLTIRIRGKGDKIRTV-FIDE 184

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
               ++E Y          I  P F G +G PL+P   Q         +  P   T HT+
Sbjct: 185 ETCRLMEIY------AGDRIFGPFFVGQQGHPLSPRTVQHLFE-----VYAPPGVTPHTI 233

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY--TNVNSKNG 306
           RHS+A+ L     +LR +Q  LGH  + TT+IY  T+++ + G
Sbjct: 234 RHSYASELYKRSKNLRVVQENLGHSSIKTTEIYLHTDLDERQG 276


>gi|241663999|ref|YP_002982359.1| site-specific tyrosine recombinase XerD [Ralstonia pickettii 12D]
 gi|240866026|gb|ACS63687.1| tyrosine recombinase XerD [Ralstonia pickettii 12D]
          Length = 298

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 146/304 (48%), Gaps = 20/304 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +   L +E GL++ TL +Y  D   +  +LA         ++I +    ++  + + R
Sbjct: 10  QRFCDALWLEDGLARNTLDAYRRDLTLYAHWLAARG------KSIAETEDGDLADYFAAR 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             +     S  R  +  K F ++ L++  ++T+ + L +   K+    P+ L+E Q   L
Sbjct: 64  HAESRAS-SANRRRTVFKRFFQWALREHVVSTDPSRL-LPTAKQPPRFPKTLSETQVEAL 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDK 196
           ++   + T      +  R+ A++ L+Y  GLR+SE ++L    + +++     + GKG K
Sbjct: 122 INAPDVDTP-----LGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEGVVRVVGGKGGK 176

Query: 197 IRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R+VP        +  Y  D     L       LF   RG+ +    F   I++      
Sbjct: 177 DRLVPFGAEAGDWLRRYLRDGRTALLGERTADALFVTARGEGMTRQAFWYLIKRYALLAD 236

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++ 
Sbjct: 237 IHAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARER----LRTLHA 292

Query: 316 QTHP 319
           Q HP
Sbjct: 293 QHHP 296


>gi|320450285|ref|YP_004202381.1| integrase/recombinase [Thermus scotoductus SA-01]
 gi|320150454|gb|ADW21832.1| integrase/recombinase [Thermus scotoductus SA-01]
          Length = 304

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 139/291 (47%), Gaps = 34/291 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + + L +ERG S   ++ Y  D     ++  F  EE  T           +RA + K   
Sbjct: 25  YAEYLLLERGYSPRGVRRYLQD---LALWFRFLQEEGFTPGP------EAVRALLLK--- 72

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKKSNSLPRALNEKQALTLVD 139
           ++   R ++  L+ ++S+ +YL + K    S+    +   K    LP     ++    ++
Sbjct: 73  ERWAPRRVQGFLAALRSYYRYLSQVKGEAVSDPTEGIGRPKAGRRLPLHPAPEELRRFLE 132

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGDK 196
              L    E + +    S +   LYG GLRISEALSL  +N++ + S    +R+ GKG+K
Sbjct: 133 A--LEAEKEARLL----SRLARFLYGTGLRISEALSLKGRNVILEGSVPVAIRVVGKGNK 186

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+VPL  + R+ +LE   L P   N++I    F    G+        RY+    R   L
Sbjct: 187 ERLVPLSRTAREVLLE---LGPPQGNVSI----FTFTHGRHRGSVPSARYVEARFREAAL 239

Query: 257 -----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                P   T H LRH++AT L+ NG +L +++ +LGH  ++TTQIY + +
Sbjct: 240 RAGLDPRRFTPHKLRHAYATLLVENGVELDAVKDLLGHESIATTQIYLHAS 290


>gi|186471692|ref|YP_001863010.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198001|gb|ACC75964.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 292

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 129/292 (44%), Gaps = 35/292 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF-IS 76
           RQ  L +++I R LS  T +SY      F        E          L   EIRA+ I 
Sbjct: 5   RQRMLHDMQI-RNLSDNTQKSYLLQVSSFARHFRRSPE---------MLGPEEIRAWLIY 54

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            R  +K+   SL  ++  ++   +   KR  + E   L     +K   LP  L+ ++  T
Sbjct: 55  LREERKLAPASLSPAIGALRFLYRVTLKRDWSDEDFPLP----RKPVRLPVVLSLEEITT 110

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195
             D++             ++  IL + Y  GLR+SE + L   +I   +  +R+ QGK  
Sbjct: 111 FFDSI----------PSLKHRTILMVAYAAGLRVSEVVHLKVTDIDSKRMVIRVNQGKNR 160

Query: 196 KIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRY 253
           K R V L P + + +  Y+ D  P D        LF G I G P+      R     R+ 
Sbjct: 161 KDRYVMLSPRLLEVLRTYWQDAHPRDW-------LFPGDIPGHPITRTAVARICALARQR 213

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            G+    T H+LRH+FATHLL  G D+R IQ ++GH  L+TT  Y  + +  
Sbjct: 214 SGITKPVTPHSLRHAFATHLLETGTDVRRIQLLMGHRSLATTSRYLRIATST 265


>gi|312136250|ref|YP_004003587.1| integrase family protein [Methanothermus fervidus DSM 2088]
 gi|311223969|gb|ADP76825.1| integrase family protein [Methanothermus fervidus DSM 2088]
          Length = 271

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 104/209 (49%), Gaps = 40/209 (19%)

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           N++  K   S+P++++EK+   L        + E      R+  IL LLY  GLR+SE +
Sbjct: 92  NLKTPKVPKSIPKSISEKEVKRLF------KAAEK----LRDKVILMLLYKTGLRVSELV 141

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +L  ++I     +++++GKG+K R+V       K +LE Y                  I+
Sbjct: 142 NLKLKDIDFTDRSIKVRGKGNKERVV-FFDEECKTLLEKY------------------IK 182

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLS-------TTAHTLRHSFATHLLSNGGDLRSIQSIL 287
              +N  +    +RQ++R +             T H LRHS+ATHLL  G ++R IQ +L
Sbjct: 183 NNSVNEKLIDISVRQIQRIVKKTAKKAKIKKRVTPHVLRHSYATHLLEKGLNIRYIQKLL 242

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           GH  LSTT+IYT V +K     + E YD+
Sbjct: 243 GHSSLSTTEIYTKVTNKK----LKEKYDK 267


>gi|229916013|ref|YP_002884659.1| integrase family protein [Exiguobacterium sp. AT1b]
 gi|229467442|gb|ACQ69214.1| integrase family protein [Exiguobacterium sp. AT1b]
          Length = 337

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 139/292 (47%), Gaps = 27/292 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG------D 85
           SK T Q Y  D   F  ++   +  ++  +TI   S+TEI    ++     +        
Sbjct: 44  SKQTAQRYVYDVLDFFRWVELVSGTELEPETIDLPSFTEIDHAGAEAYATYLALELENAP 103

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL---TLVDNVL 142
             + R LS ++S   YL +    T +    +   K+    P  L E + L   TLV + +
Sbjct: 104 SVINRKLSTLQSLFNYLIETNQATVNPFQTVERPKRGKRNPVYLTESEWLDFSTLVRSNV 163

Query: 143 LHTSHETKWID---ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             T+ E  W +   AR+  I+ LL   G+R+SE + L   +I  +  T+R+ GKGDK R+
Sbjct: 164 GMTNREASWYEMNRARDFLIIQLLGLTGMRVSELVGLNWSDINLETGTIRVIGKGDKERL 223

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR----YIRQLRRYLG 255
           +P+   +   + EY        + + +  +F+  +G+ +     Q     +I +L+ YL 
Sbjct: 224 IPIAGPLLPLLSEYR-------HTSSEGAVFQNEKGQRIAVRTVQHMLKGHIDRLKPYLP 276

Query: 256 LPLS---TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             LS    T H LRH+FA+ L   G D+ +IQ +LGH  ++TTQ+Y ++  +
Sbjct: 277 F-LSHKQVTPHKLRHTFASRLAMGGVDVLTIQQLLGHESVATTQVYAHIGDE 327


>gi|317121205|ref|YP_004101208.1| integrase family protein [Thermaerobacter marianensis DSM 12885]
 gi|315591185|gb|ADU50481.1| integrase family protein [Thermaerobacter marianensis DSM 12885]
          Length = 318

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 133/292 (45%), Gaps = 23/292 (7%)

Query: 15  LKER-QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY---TEEKITIQTIRQLSYTE 70
           L ER + +L+   +ERGL    L+ Y  D   F  +LA       E +T   +       
Sbjct: 4   LPERAEQYLETKRVERGLRTSRLEEYRRDLADFCRWLAGRLRKNPEDLTDADLAGFDRDG 63

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPR 127
            R +++    +++   +  R  S +  + +++    +        +      ++   LP 
Sbjct: 64  ARRWLAHLADRELAPSTRDRRWSTVGGWFRWMVAEGVLPRDPFAGLERPVRGERHKRLPV 123

Query: 128 ALNEKQALTLVDNVL-------LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
            L E +A  L+  VL          +H  + +  R+ A++  L   GLRISEA+ L   +
Sbjct: 124 YLAETEAERLLRTVLSDEGLTPRQKAHHAR-LKERDHALVTTLLYQGLRISEAVGLRYGD 182

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPL- 238
           +  D+ TLR+ GKGDK R++PL    ++A+L Y    P        Q PL+  + G+PL 
Sbjct: 183 VDFDEDTLRVIGKGDKERLLPLHRRTKEALLRYLATWPGPKKPKAPQDPLWWTLTGQPLT 242

Query: 239 -NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
            N    +R++ +     GL    +AH LRH+F T L   G DL  I+ +LGH
Sbjct: 243 KNAAAVKRHLVR----AGL-WRASAHKLRHTFGTRLAEAGVDLLVIKDLLGH 289


>gi|220683973|gb|ACL80794.1| IntIA [Vibrio splendidus]
          Length = 324

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/178 (35%), Positives = 88/178 (49%), Gaps = 38/178 (21%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI-------LEY 213
           L+YG GLR+ E L L  Q+I  D  ++R+ QGKG K RIV + P +  AI        EY
Sbjct: 129 LMYGSGLRLMECLRLRMQDIDYDYKSVRVWQGKGGKNRIVTIAPELFPAIKLQQQKSAEY 188

Query: 214 YDLCPFDLNLN-IQLP------------------LFRGIRGKP-----------LNPGVF 243
           Y     D   + + LP                  LF   R  P           ++P   
Sbjct: 189 YQQDIHDKAFSGVYLPDSLAKKYPSAERSLNWQFLFPSARLAPDLRTGELRRHHIHPTAL 248

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           Q++I+   +   +  + + HTLRHSFATHLL +G D+R++Q  LGH  L TTQIYT++
Sbjct: 249 QKHIKVASQKADIEKNISCHTLRHSFATHLLQSGADIRTVQEQLGHTDLKTTQIYTHI 306


>gi|255326180|ref|ZP_05367266.1| tyrosine recombinase XerD [Rothia mucilaginosa ATCC 25296]
 gi|255296634|gb|EET75965.1| tyrosine recombinase XerD [Rothia mucilaginosa ATCC 25296]
          Length = 438

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 116/254 (45%), Gaps = 28/254 (11%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV- 141
           +G  S+ R+++ ++    +     I        +   K    LP+A++       V+++ 
Sbjct: 190 LGPNSIARTMAAVRGAHAFWVSALIVPTDPAAPVTPPKNVKRLPKAVS-------VEDIQ 242

Query: 142 -LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---------DDQSTL--- 188
            LL           RN AIL  LY  G R+SE L+    ++           +Q TL   
Sbjct: 243 RLLAVPDRETATGLRNRAILEFLYATGARVSEMLNADIDDVHFEGTLTDEDGNQITLPGY 302

Query: 189 -RIQGKGDKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            R+ GKG+K R+VP+    +KAI +Y       F  +      LF   RG  L       
Sbjct: 303 VRLFGKGNKERLVPIGSYAQKAIQDYLVRARPSFVAHGKGTSALFVNGRGGRLGRQGAWL 362

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +++     GL    + H++RHSFATHLL  G D+R +Q +LGH  ++TTQ+YT V  + 
Sbjct: 363 ILKEAAEAAGLSSDFSPHSMRHSFATHLLQGGADIRVVQELLGHASIATTQVYTKVTPEG 422

Query: 306 GGDWMMEIYDQTHP 319
               +ME+Y   HP
Sbjct: 423 ----LMEVYRMAHP 432


>gi|187922254|ref|YP_001893896.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187713448|gb|ACD14672.1| integrase family protein [Burkholderia phytofirmans PsJN]
          Length = 333

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 156/343 (45%), Gaps = 45/343 (13%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E +++ L      WL     +R  S+ T+ SY    + +L F+A      ++   + +L+
Sbjct: 4   ESLAYWLHAFFHEWLAE---QRNCSRHTVLSYRDAWKLYLQFVARRHHRPVSALKLDELT 60

Query: 68  YTEIRAFI----SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE---SNILNMRNLK 120
             E+ AF+    S+RRT  IG R+ +  L+ I+SF +++  R+  +    + +L++   K
Sbjct: 61  ADEVLAFLKHSESERRTS-IGTRNCR--LAAIRSFFRFVADREPLSAMQCAAVLSIPTKK 117

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                P  L+  +    V  +L      T     R+ A+L LLY  G RI EAL + P N
Sbjct: 118 GPKPEPDYLDGDE----VAAILRRPDRSTP-EGQRDHALLALLYNTGARIQEALDVCPSN 172

Query: 181 I-MDDQSTLRIQGKGDKIRIVPLLP---SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
           I +   + +++ GKG K RI PL P   ++ KA+LE     P++       PLF    G 
Sbjct: 173 IRLTAPAQVKLYGKGRKARICPLWPETAALLKALLERQPR-PYNE------PLFVNRYGG 225

Query: 237 PLNPG----VFQRYIR-------QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
           PL+         +Y+R        LR+    P     HT RH+    +++ G D+  I++
Sbjct: 226 PLSAAGARFKLAQYVRAAAYDSPSLRKKRVHP-----HTFRHTAGVQMIAAGVDVTVIRN 280

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
             GH  L TT  Y   N +     + ++   T P    + ++N
Sbjct: 281 WFGHVSLDTTNHYARANIETKRLALEQVDRSTRPGSPPRWRRN 323


>gi|298292762|ref|YP_003694701.1| integrase family protein [Starkeya novella DSM 506]
 gi|296929273|gb|ADH90082.1| integrase family protein [Starkeya novella DSM 506]
          Length = 334

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 137/322 (42%), Gaps = 50/322 (15%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E + +L  +  ERG    TL +Y    R    + AF  +E +      +     IRA+++
Sbjct: 5   EARLFLDMMAAERGAGANTLAAY---GRDLDDYEAFLVDEGVGPL---EAGTEHIRAWLA 58

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               + +   S+ R LS ++ F ++L       +     +   ++   LP+ L   +  T
Sbjct: 59  ALSARGLAGASVARKLSAVRQFHRFLYVETYRGDDPAAVLEGPRRGRPLPKVLTLDEVTT 118

Query: 137 LVDNVLLHTSHETKWIDARNS---------------------AILYLLYGCGLRISEALS 175
           L++      +       A                          + LLY  GLR+SE  +
Sbjct: 119 LIETAHARAAAPCAAPAAGALPDRAGDAAVRAGEAARRARVACFVELLYATGLRVSELAA 178

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           L           + ++GKG+K R+VPL  + + A+  Y       + L  Q    +G + 
Sbjct: 179 LPASAANAKGDAIIVRGKGNKERLVPLGEAAKGAMRAYR------VALG-QAATVKGAKA 231

Query: 236 KP-----LNP-----GVFQRY-----IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGD 279
           +P     L P     G   R      ++ L    GL P   + H LRH+FA+HLL++G D
Sbjct: 232 RPEDGRWLFPSAAASGHITRQQVALDLKDLALAAGLDPSKLSPHVLRHAFASHLLAHGAD 291

Query: 280 LRSIQSILGHFRLSTTQIYTNV 301
           LR +Q++LGH  +STTQIYT+V
Sbjct: 292 LRIVQTLLGHSDISTTQIYTHV 313


>gi|291530097|emb|CBK95682.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 338

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 143/321 (44%), Gaps = 32/321 (9%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E+   E       ++      + LS  T+ +Y  D  QF  F +             +LS
Sbjct: 34  EVKMIEFKTHIDGFINYCRYHKKLSDKTISAYCIDLIQFRCFTS-------------ELS 80

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
              +  +I +   +    +++KR L+ +K+F  YL  R I  + N  +   ++ S   P 
Sbjct: 81  KQSLWNYI-EHLNKSYKPKTVKRKLATLKAFTHYLLIRDII-DCNPFD--KIETSIKEPV 136

Query: 128 ALNEKQALTLVDNVLL--HTSHETKWID------ARNSAILYLLYGCGLRISEALSLTPQ 179
            L +   L  +  +L   +T  E    D       RN+A+L LL+  G R++E  +L  Q
Sbjct: 137 ILPKTIPLDTIGEILCFAYTQIEKSNTDYKKNSAIRNAAVLELLFATGARVAEICNLHSQ 196

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLL-PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           ++     ++++ GKG K RI+P+   SV   + +YY +   +  ++     F    GK L
Sbjct: 197 DVDFIGKSVKLYGKGSKERIIPIENTSVLTILSDYYFI--HEEKISDCGYFFVNKYGKRL 254

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                +  I    +  G+ +  T H  RHSFAT LL    D+R IQ +LGH  ++TTQIY
Sbjct: 255 TEQSVRCMINSYCQTCGISMHITPHMFRHSFATLLLEQDVDIRYIQKLLGHSSITTTQIY 314

Query: 299 TNVNSKNGGDWMMEIYDQTHP 319
           T+V S        EI    HP
Sbjct: 315 THVTSAKQK----EIIKTKHP 331


>gi|332306644|ref|YP_004434495.1| integron integrase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332173973|gb|AEE23227.1| integron integrase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 321

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 96/194 (49%), Gaps = 38/194 (19%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206
           ++A+N   + +LY  GLR+ E + L  Q+I  D  ++R+  GKG K R+V     L+P++
Sbjct: 119 VNAQNKLAVSILYASGLRLMECMRLRVQDIDFDFKSIRVWHGKGGKHRVVTLADELIPTL 178

Query: 207 RKAIL---EYYD-----------LCPFDLNLNI----------------QL---PLFRGI 233
           ++ I    +Y D             P  L L                  QL   P  + +
Sbjct: 179 QQQITVVKQYLDADLLNPEYSGVYLPHRLRLKFKNANRSIQWQYVFASRQLSKDPEDQSL 238

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   ++    Q+ IR   +   +P + T HTLRHSFATHLL +G D+R++Q  LGH  L 
Sbjct: 239 RRHHIDGSTVQKAIRHAAKKASIPKTVTPHTLRHSFATHLLQSGADIRTVQDQLGHSDLR 298

Query: 294 TTQIYTNVNSKNGG 307
           TTQIYT++  + G 
Sbjct: 299 TTQIYTHILQRGGN 312


>gi|269967891|ref|ZP_06181932.1| site-specific recombinase IntI [Vibrio alginolyticus 40B]
 gi|269827489|gb|EEZ81782.1| site-specific recombinase IntI [Vibrio alginolyticus 40B]
          Length = 320

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 87/194 (44%), Gaps = 38/194 (19%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL-------- 202
           ID R    + LLYG GLR+ E L L  Q+I  D   +R+ QGKG K R V L        
Sbjct: 118 IDPRYRLHIQLLYGSGLRVMECLRLRVQDIDYDYGAVRVWQGKGGKNRTVTLAKELHEPL 177

Query: 203 ----------------LPS-----VRKAILEYYDLCPFDLNLNIQLPLFR--------GI 233
                           +P      + + +   Y     D N +   P  +         +
Sbjct: 178 KAQVNLARNYYFKDRHMPGYAGVYISEGLRRKYPKAELDFNWHFLFPSTKLSADRDTGEL 237

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N    QR +++      +  + T HTLRHSFATHLL +G D+R++Q  LGH  + 
Sbjct: 238 RRHHINESAIQRAVKRAASDASIEKTVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVK 297

Query: 294 TTQIYTNVNSKNGG 307
           TTQIYT+V  +  G
Sbjct: 298 TTQIYTHVIERGAG 311


>gi|167751075|ref|ZP_02423202.1| hypothetical protein EUBSIR_02060 [Eubacterium siraeum DSM 15702]
 gi|167655993|gb|EDS00123.1| hypothetical protein EUBSIR_02060 [Eubacterium siraeum DSM 15702]
          Length = 338

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 143/321 (44%), Gaps = 32/321 (9%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E+   E       ++      + LS  T+ +Y  D  QF  F +             +LS
Sbjct: 34  EVKMIEFKTHIDGFINYCRYHKKLSDKTISAYCIDLIQFRCFTS-------------ELS 80

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
              +  +I +   +    +++KR L+ +K+F  YL  R I  + N  +   ++ S   P 
Sbjct: 81  KQSLWNYI-EHLNKSYKPKTVKRKLATLKAFTHYLLIRDII-DCNPFD--KIETSIKEPV 136

Query: 128 ALNEKQALTLVDNVLL--HTSHETKWID------ARNSAILYLLYGCGLRISEALSLTPQ 179
            L +   L  +  +L   +T  E    D       RN+A+L LL+  G R++E  +L  Q
Sbjct: 137 ILPKTIPLDTIGEILCFAYTQIEKSNTDYKKNSAIRNAAVLELLFATGARVAEICNLHSQ 196

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLL-PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           ++     ++++ GKG K RI+P+   SV   + +YY +   +  ++     F    GK L
Sbjct: 197 DVDFIGKSVKLYGKGSKERIIPIENTSVLTILSDYYFI--HEEKISDCGYFFVNKYGKRL 254

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                +  I    +  G+ +  T H  RHSFAT LL    D+R IQ +LGH  ++TTQIY
Sbjct: 255 TEQSVRCMINSYCQTCGISMHITPHMFRHSFATLLLEQDVDIRYIQKLLGHSSITTTQIY 314

Query: 299 TNVNSKNGGDWMMEIYDQTHP 319
           T+V S        EI    HP
Sbjct: 315 THVTSAKQK----EIIKTKHP 331


>gi|295135108|ref|YP_003585784.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
 gi|294983123|gb|ADF53588.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
          Length = 363

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 135/292 (46%), Gaps = 31/292 (10%)

Query: 20  NWLQNLEIERG--------LSKLTLQSYECDT-RQFLIFLAFYTEEKITIQTIRQLSYTE 70
           +W +N +I  G        L KL L+ Y   T + ++ F   +     + + I  L   E
Sbjct: 80  SWFRNRDIPGGYRRCPENYLLKLELKRYSVSTIKTYVTFFEKFINH-YSQRDIDSLDECE 138

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           IR F+     +   +  + ++++ IK + + +        +   +M   ++ + LP+ ++
Sbjct: 139 IRLFLQSLIQENKSNSYINQAINAIKFYYEVV----CGMPNRFYDMERPRREHRLPQVIS 194

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            ++   +++N            + ++  I+ LLY  GLR SE L+L  Q+I   +  ++I
Sbjct: 195 REEIFAIIENTN----------NIKHRCIVELLYSSGLRRSELLNLKLQDIDSKRMLIKI 244

Query: 191 Q-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG+K R   L       + +YY           ++ LF G  GK  +     + ++ 
Sbjct: 245 KAGKGNKDRFTILSEKCLAHLRQYYR------KWKPEIYLFEGQPGKQYSGASVLKVVKN 298

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                    + + H LRHSFATHLL +G DLR IQ +LGH    TT+IYT+V
Sbjct: 299 ASSKAKPNKNISPHILRHSFATHLLESGVDLRKIQVLLGHGSTKTTEIYTHV 350


>gi|254513132|ref|ZP_05125198.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11]
 gi|221533131|gb|EEE36126.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11]
          Length = 236

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 81/149 (54%), Gaps = 8/149 (5%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL 216
           A L + YG GLR SE  +LT  +I  D+  + + QGKG K R V L P +   + +Y+  
Sbjct: 69  AALSISYGAGLRASEVCNLTAGDIDSDRVLIHVVQGKGRKDRKVMLSPDLLDLLRDYW-- 126

Query: 217 CPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
           C        +  LF G  +  P++P    R     +R  G+    T HTLRHSFATHLL 
Sbjct: 127 C----EARPEGWLFPGKPKINPISPRQLNRAFTSAKRMAGINKPATLHTLRHSFATHLLE 182

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            G D+R IQ +LGH +L+TT  YT V +K
Sbjct: 183 AGTDVRVIQVLLGHAKLTTTAQYTKVATK 211


>gi|325261284|ref|ZP_08128022.1| recombinase [Clostridium sp. D5]
 gi|324032738|gb|EGB94015.1| recombinase [Clostridium sp. D5]
          Length = 313

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 137/292 (46%), Gaps = 23/292 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +++ L IER L   TL +Y+ D    + ++       +   TI       +  F+  +  
Sbjct: 15  FVEVLSIERNLGVKTLYAYKNDVDNMVKWIDMRGYSDLDADTI-------MMYFLYLQNE 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLKKSNSLPRALNEKQALTLVD 139
            ++  RS++R    I+ +  +L K     E     + R  +   +LP+ L++ +  +L+ 
Sbjct: 68  IELSPRSIRRKYVSIRQYCDFLNKEFDMNEIFFKFSSRKFQIPKNLPKVLSKAEIQSLIS 127

Query: 140 NVLLH----TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +V       +S   + +  RN  I+ LL+  GLRI E  ++  ++   +  ++ I GKG 
Sbjct: 128 SVSAEFQSVSSEYHRRLCIRNMCIIELLFCLGLRIGEIAAMDVEDYNREDCSVLIHGKGK 187

Query: 196 KIRIV----PLL-PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           K R++    P++   +   IL   ++ P D        +F    G  L+    +    + 
Sbjct: 188 KERMLFISSPIVCQKLNNWILTRQEMSPADS------AMFVNKSGGRLSIFSIENIYYKY 241

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           R    +   +T H LRHSFAT LL+NG ++R +Q ++GH  + TTQIYT V+
Sbjct: 242 RELSQINPHSTPHYLRHSFATQLLNNGANIRDVQELMGHNSIVTTQIYTEVS 293


>gi|116621640|ref|YP_823796.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116224802|gb|ABJ83511.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 336

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 136/314 (43%), Gaps = 24/314 (7%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF---ISKRRTQKIG 84
           +R  S  T+ +Y    R FL F+A    + +   ++  L+  ++ AF   I K R   + 
Sbjct: 24  QRNASHRTILAYRDAWRLFLRFVAQRRNKPVAALSLEHLTGADVLAFLQYIEKERRASVN 83

Query: 85  DRSLKRSLSGIKSFLKYL---KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            R+ +  L+ ++SF  ++   + R     + +L +   K +    R L   +      + 
Sbjct: 84  TRNCR--LAALRSFFSFVVEHEPRVALQCAEVLRVPFKKATRRATRYLESVEV-----SA 136

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIV 200
           +L     T     R+ A+L LLY  G RI EAL L PQ++     + +R+ GKG K RI 
Sbjct: 137 ILSQPDRTTVGGQRDHALLSLLYNTGARIQEALDLRPQDVYFKSPAHVRLMGKGRKERIS 196

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+ P     +       P   +     P+F      PL    F+  +RQ        + T
Sbjct: 197 PIWPETANLVTALIRRQPRKPDE----PIFVNRYRSPLTASGFRFRLRQYVEAAAKTVPT 252

Query: 261 ------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
                 T H  RHS A HL++ G D+  I+S LGH +L TT  Y   N +     + ++ 
Sbjct: 253 ISRKRVTPHVFRHSTAVHLVAAGVDVTVIRSWLGHAQLDTTNHYAQANLETKRKALEQVD 312

Query: 315 DQTHPSITQKDKKN 328
            +  P+   + K++
Sbjct: 313 PKLRPAKPPRWKRD 326


>gi|205320825|gb|ACI02940.1| TnpF [uncultured bacterium HH1107]
          Length = 221

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 95/191 (49%), Gaps = 25/191 (13%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           KK  +LP  ++E++ + ++  +           + ++ AIL  +Y  GLRISE ++L  +
Sbjct: 38  KKEKTLPVVMSEEETIRVLRAIE----------NVKHKAILMTIYSAGLRISECINLKIK 87

Query: 180 NIMDDQSTLRI-QGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +I   +  +RI Q KG + R   L    L  +R   +EY    P D        LF G +
Sbjct: 88  DIDSKRMQIRIEQSKGKRDRYTILSEKTLIILRTYFMEY---KPKDY-------LFEGQK 137

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G   +    Q   +       +    T HTLRHSFATHLL NG  LR IQS+LGH    T
Sbjct: 138 GGAYSSRSIQNIFKAAVLKAKIQKEVTVHTLRHSFATHLLENGTSLRYIQSLLGHSSSKT 197

Query: 295 TQIYTNVNSKN 305
           T++YT++ +K 
Sbjct: 198 TEVYTHITTKG 208


>gi|253755098|ref|YP_003028238.1| integrase [Streptococcus suis BM407]
 gi|251817562|emb|CAZ55309.1| integrase [Streptococcus suis BM407]
          Length = 295

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 143/299 (47%), Gaps = 46/299 (15%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N+L   +  + LS  TL++Y+ D  QF     + +  +  I  I  L+++ ++       
Sbjct: 8   NYLDYCKAHKRLSTHTLRAYKNDLMQF-----YNSNNECVISYIEGLTHSNLKT------ 56

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLV 138
                  +L+R ++ +K F  YL+ + + T++    +R   +   +LP+ ++        
Sbjct: 57  ------STLRRKIASLKVFYGYLQLKNVITDNPFNQLRFQFRAEKTLPKTISH------- 103

Query: 139 DNV-LLHTSHETKWIDA----------RNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           D++ +L+T  + K I A          RN  I+ LL   G+RISE   +  ++I   + T
Sbjct: 104 DSLKILYTYLQKKMISAKTIYQKQKAERNLLIVSLLLSTGIRISELCHIQIKDINLTEQT 163

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           L+I GKG K R++ +       +L+ Y  C  +   +   P      GK L   + ++ +
Sbjct: 164 LQILGKGKKERMIFIGDERTFQLLKAYITCYCNHTDDYLFP------GKSLQKPLTEQSV 217

Query: 248 RQL----RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           R L    +    L  + T H  RHSFAT LL N  D+R IQ ILGH  +S TQIYT+V+
Sbjct: 218 RLLLKTAKTQTRLTTTITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISITQIYTHVS 276


>gi|317477593|ref|ZP_07936813.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906241|gb|EFV27975.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 348

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 16/204 (7%)

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           +K+  ++ +  E     +   K+  +LP  L++++   ++D  +          D R   
Sbjct: 138 IKFYYEKVLGQERRCYKVNRAKREKTLPDVLSKEEIKKILDVTV---------TDLRFFC 188

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC 217
           +  +LY  GLRISE L L P +I + +S +R+ QGKG K R   L   + K + EY  L 
Sbjct: 189 MFSILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSRPLMKKLTEYNRL- 247

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
                   ++ LF    G+P    +  + ++   R  G+      H LRHSFATHLL  G
Sbjct: 248 -----YKPKVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQG 302

Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301
            D++ ++ ++GH  + TT+ Y ++
Sbjct: 303 TDIKIVKELMGHNNIKTTERYVHI 326


>gi|295133148|ref|YP_003583824.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
 gi|294981163|gb|ADF51628.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
          Length = 375

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 135/292 (46%), Gaps = 31/292 (10%)

Query: 20  NWLQNLEIERG--------LSKLTLQSYECDT-RQFLIFLAFYTEEKITIQTIRQLSYTE 70
           +W +N +I  G        L KL L+ Y   T + ++ F   +     + + I  L   E
Sbjct: 92  SWFRNRDIPGGYRRCPENYLLKLELKRYSVSTIKTYVTFFEKFINH-YSQRDIDSLDECE 150

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           IR F+     +   +  + ++++ IK   + +        +   +M   ++ + LP+ ++
Sbjct: 151 IRLFLQSLIQENKSNSYINQAINAIKFNYEVV----CGMPNRFYDMERPRREHRLPQVIS 206

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            ++   +++N            + ++  I+ LLY  GLR SE L+L  Q+I   +  ++I
Sbjct: 207 REEIFAIIENTN----------NIKHRCIVELLYSSGLRRSELLNLKLQDIDSKRMLIKI 256

Query: 191 Q-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG+K R   L       + +YY           ++ LF G  GK  +     + ++ 
Sbjct: 257 KAGKGNKDRFTILSEKCLAHLRQYYR------KWKPEIYLFEGQPGKQYSGASVLKVVKN 310

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                 L  + + H LRHSFATHLL +G DLR IQ +LGH    TT+IYT+V
Sbjct: 311 ASSKAKLNKNISPHILRHSFATHLLESGVDLRKIQVLLGHGSTKTTEIYTHV 362


>gi|315506755|ref|YP_004085642.1| tyrosine recombinase xerd [Micromonospora sp. L5]
 gi|315413374|gb|ADU11491.1| tyrosine recombinase XerD [Micromonospora sp. L5]
          Length = 323

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 83/164 (50%), Gaps = 10/164 (6%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFD 220
            LYG G RISEA+     ++  D  T+ ++GKG + R+VP+      A+  +     P  
Sbjct: 161 FLYGTGARISEAVGAAVDDLDLDAGTVLLRGKGGRTRLVPVGGYAADALRAWLVRGRPAL 220

Query: 221 LNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL----STTAHTLRHSFATHLLS 275
           L        +F   RG PL        +R      GLP+    + + HTLRHS+ATHLL 
Sbjct: 221 LAAGRGTHAVFVNARGGPLTRQGAWAVLRTAAARAGLPVDGPDAVSPHTLRHSYATHLLD 280

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            G D+R +Q +LGH  ++TTQ+YT V  +     + E+Y   HP
Sbjct: 281 GGADVRVVQELLGHASVTTTQVYTLVTVER----LREVYATAHP 320


>gi|302866903|ref|YP_003835540.1| tyrosine recombinase XerD [Micromonospora aurantiaca ATCC 27029]
 gi|302569762|gb|ADL45964.1| tyrosine recombinase XerD [Micromonospora aurantiaca ATCC 27029]
          Length = 323

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 83/164 (50%), Gaps = 10/164 (6%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFD 220
            LYG G RISEA+     ++  D  T+ ++GKG + R+VP+      A+  +     P  
Sbjct: 161 FLYGTGARISEAVGAAVDDLDLDAGTVLLRGKGGRTRLVPVGGYAADALRAWLVRGRPAL 220

Query: 221 LNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL----STTAHTLRHSFATHLLS 275
           L        +F   RG PL        +R      GLP+    + + HTLRHS+ATHLL 
Sbjct: 221 LAAGRGTHAVFVNARGGPLTRQGAWAVLRTAAARAGLPVDGPDAVSPHTLRHSYATHLLD 280

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            G D+R +Q +LGH  ++TTQ+YT V  +     + E+Y   HP
Sbjct: 281 GGADVRVVQELLGHASVTTTQVYTLVTVER----LREVYATAHP 320


>gi|326391735|ref|ZP_08213258.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus JW 200]
 gi|325992235|gb|EGD50704.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus JW 200]
          Length = 290

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 140/299 (46%), Gaps = 19/299 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L   + LSK TL+SY  D  QFL +L    E  I    +++ +      ++ K+  
Sbjct: 9   FLDFLTKNKKLSKNTLESYNRDINQFLNYLE---EIGINCYNVKKSTILNYLYYLKKKGK 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            +    ++ R+LS +K+F  YL  +K   E     +   K     P  L  +Q      +
Sbjct: 66  SQA---TVSRNLSSLKAFYHYLFMKKKIEEDPTYMINTPKVEKKPPTTLTVEQV-----D 117

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +LL           R+ A++ LLY  GL++SE +SL  +++      + I  + +K R++
Sbjct: 118 MLLSLDFGDDEKGLRDKALIELLYATGLKVSEVISLKLEDVNLSYGYVVI--RSNKERVI 175

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+     +A+  Y +        N +  LF  +RG+ L      + IR+    +      
Sbjct: 176 PIGSHAIEALKNYIE--KGRKAKNGENTLFLNLRGQKLTRQGCWKIIREYTDKINPGFPV 233

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           T +TLR SFA H+L NG D+R++Q +LG+     T + TN+ S      + E+Y++ HP
Sbjct: 234 TPNTLRQSFAQHMLQNGADIRAVQEMLGY----QTDLNTNLLSLISKSKIKEVYNKFHP 288


>gi|291515144|emb|CBK64354.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 372

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 16/204 (7%)

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           +K+  ++ +  E     +   K+  +LP  L++++   ++D  +          D R   
Sbjct: 162 IKFYYEKVLGQERRCYKVNRAKREKTLPDVLSKEEIKKILDVTV---------TDLRFFC 212

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC 217
           +  +LY  GLRISE L L P +I + +S +R+ QGKG K R   L   + K + EY  L 
Sbjct: 213 MFSILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSRPLMKKLTEYNRL- 271

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
                   ++ LF    G+P    +  + ++   R  G+      H LRHSFATHLL  G
Sbjct: 272 -----YKPKVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQG 326

Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301
            D++ ++ ++GH  + TT+ Y ++
Sbjct: 327 TDIKIVKELMGHNNIKTTERYVHI 350


>gi|262393940|ref|YP_003285794.1| integron integrase IntI4 [Vibrio sp. Ex25]
 gi|262337534|gb|ACY51329.1| integron integrase IntI4 [Vibrio sp. Ex25]
          Length = 320

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 87/194 (44%), Gaps = 38/194 (19%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL-------- 202
           ID R    + LLYG GLR+ E L L  Q+I  D   +R+ QGKG K R V L        
Sbjct: 118 IDPRYKLHIQLLYGSGLRVMECLRLRVQDIDYDYGAVRVWQGKGGKNRTVTLAKELHEPL 177

Query: 203 ----------------LPS-----VRKAILEYYDLCPFDLNLNIQLPLFR--------GI 233
                           +P      + + +   Y     D N +   P  +         +
Sbjct: 178 KAQVNLARDYYFKDRHMPGYAGVYISEGLRRKYPKAELDFNWHFLFPSTKLSTDRDTGEL 237

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N    QR +++      +  + T HTLRHSFATHLL +G D+R++Q  LGH  + 
Sbjct: 238 RRHHINESAIQRAVKRAATDACIEKTVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVK 297

Query: 294 TTQIYTNVNSKNGG 307
           TTQIYT+V  +  G
Sbjct: 298 TTQIYTHVIERGAG 311


>gi|320321496|gb|EFW77605.1| hypothetical protein PsgB076_27145 [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 319

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 134/290 (46%), Gaps = 31/290 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W  N++  R     T ++Y+ D   F  F+     ++      R ++   + A+ ++  T
Sbjct: 32  WFANIDNPR-----TRRAYQNDLEDFCSFVGLTGADEF-----RAVTRAHVLAWRAQLET 81

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN---MRNLKKSNSLPRALNEKQALTL 137
           + +   +++R L+ + S   +L +       N ++      ++ +     AL + QA  L
Sbjct: 82  RGLAGATIRRKLAALASLFDHLLENNAVAGGNPVHGVKRPKIETNEGKTPALGDDQAKRL 141

Query: 138 VDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194
           +D      + +T+ +   R+ AIL +L   GLR  EA  LT  ++++ +    LR+ GKG
Sbjct: 142 LD------APDTETVKGVRDRAILAVLLYHGLRREEAARLTTSDLVERRGIKHLRVHGKG 195

Query: 195 DKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGV----FQRYIRQ 249
            KIR +PL P   + I  Y +L    D +     PLFR +RGK    GV        +  
Sbjct: 196 KKIRFLPLHPVAAERIYAYLELDSARDTSSG---PLFRSVRGKTTGAGVTANGLYTVVAH 252

Query: 250 LRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             R  G+ +     H LR + AT+ L +  D+  +Q  LGH  +STT++Y
Sbjct: 253 WARVAGIEVDGLGVHGLRATAATNALDHDADIAKVQMWLGHANISTTRLY 302


>gi|260438241|ref|ZP_05792057.1| tyrosine recombinase XerD [Butyrivibrio crossotus DSM 2876]
 gi|292809434|gb|EFF68639.1| tyrosine recombinase XerD [Butyrivibrio crossotus DSM 2876]
          Length = 306

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 137/298 (45%), Gaps = 17/298 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + ++   + ++ L + TL +Y+ D +QF         +++   +I  ++   +  +IS  
Sbjct: 9   EEYISFCQYQKRLDRKTLNAYKTDLKQF--------SQQLHSISIEAVTPDMLENYISHL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTL 137
             Q    +++KR ++ +K+F  YLK ++I   +    +    ++   LP+ +  +   T 
Sbjct: 61  H-QSYKSKTVKRKIASLKAFFHYLKYKEIIDRNPFDKIHVKFREPVILPKTIPLRTVETF 119

Query: 138 VDNVLLHTSHETKWIDARNS----AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           +  +    +        RN+    A++ LL+  G+RISE  SL   ++     T+ I GK
Sbjct: 120 LATIYHQRNCAKTTYQRRNAIRDIAVIELLFSTGIRISELCSLNVNDVNLQDGTILIYGK 179

Query: 194 GDKIRIVPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K R + +    V   +LEY     + + +      F    G+ L+    +R I +   
Sbjct: 180 GSKERCMHIGNDKVLSVLLEYKQ--EYSIEIQNCKHFFVNQSGRFLSDQAVRRMINKYSA 237

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              + L  T H  RH+FAT LL    D+R IQ +LGH  ++ T+IYT+V      D +
Sbjct: 238 LAAIELHITPHMFRHTFATCLLEADVDIRYIQEMLGHSSINITEIYTHVAMSKKKDIL 295


>gi|111225141|ref|YP_715935.1| tyrosine recombinase [Frankia alni ACN14a]
 gi|111152673|emb|CAJ64414.1| Tyrosine recombinase [Frankia alni ACN14a]
          Length = 355

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 86/184 (46%), Gaps = 41/184 (22%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R++ +L LLYG G+R+SE   L   +I D++  LR+ GKG + R VP             
Sbjct: 192 RDALVLELLYGSGVRVSELCGLDLGDIDDERRLLRVLGKGGRERSVP------------- 238

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPL-------------------NPGVFQRYIRQLRRYLG 255
               F +     L  +R   G+PL                   +P   +R + +      
Sbjct: 239 ----FGVPAAGALRAWR-TSGRPLLAAPQSGSALLLGQLGGRLDPRTVRRVLARCVELGI 293

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +P   T H LRHS ATH+L  G DLRS+Q  LGH  L+TTQIYT+V  +     +   ++
Sbjct: 294 VPPGLTPHGLRHSAATHMLEGGADLRSVQEFLGHASLATTQIYTHVTPER----LRAAFE 349

Query: 316 QTHP 319
           Q HP
Sbjct: 350 QAHP 353


>gi|88803782|ref|ZP_01119305.1| tyrosine type site-specific recombinase [Polaribacter irgensii
           23-P]
 gi|88780310|gb|EAR11492.1| tyrosine type site-specific recombinase [Polaribacter irgensii
           23-P]
          Length = 374

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 136/302 (45%), Gaps = 44/302 (14%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +PE+   ++ K ++ WL     ++ LSK T+ +Y   T  ++ +      +  +++T+  
Sbjct: 95  IPELYMTDVRKFKK-WL----FQKRLSKNTVHTYVTVTATYIRYALLKKADLFSMKTVAA 149

Query: 66  LSYTEIRAFISKR----RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            +Y  I  F+  +    + Q IG         GI+ F  Y  K     E  I   R  KK
Sbjct: 150 FNYDSI--FVPNKSISYQNQFIG---------GIQKFFAY--KGYAYEEIPIERPRKEKK 196

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              LP  L+  +   +   +           + ++ A+L LLY  GLRI EA++L   +I
Sbjct: 197 ---LPIILSGAEIKAIFSTI----------TNLKHKALLSLLYSAGLRIGEAITLEVTDI 243

Query: 182 MDDQSTLRI--QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
            D Q  L    Q KG K R   L P   K + +YY      +    +  LF G  G   +
Sbjct: 244 -DCQRMLIYGRQAKGKKDRYTLLSPVFLKILRDYY------VAYRPKNSLFEGANGSTYS 296

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               Q+ ++      G+    T H+LRHSFATHLL  G D+R IQ +LGH    TT IYT
Sbjct: 297 DASAQKVLKNALFKAGIRKKATLHSLRHSFATHLLEKGTDIRYIQELLGHSSPKTTMIYT 356

Query: 300 NV 301
           +V
Sbjct: 357 HV 358


>gi|304440179|ref|ZP_07400069.1| tyrosine recombinase XerC [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371228|gb|EFM24844.1| tyrosine recombinase XerC [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 321

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 155/317 (48%), Gaps = 32/317 (10%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIF-----LAFYTEE------- 56
           +++F LL    ++L  L   RGLS  T+  Y  D + FL++     L F T+E       
Sbjct: 2   VMNFTLL---DDFLGYLVSTRGLSMNTVNGYYYDLKNFLVYIVARKLNFDTKELDDRYLE 58

Query: 57  KITIQTIRQLSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE---SN 112
           K+++  I+ ++  +I A+ S    T+K    ++ R  S I++F  YL  +    E   S+
Sbjct: 59  KMSLDLIKTVNKQDIYAYNSYLVHTKKNKMNAVSRKNSAIRTFFNYLTSKINVLEVDPSS 118

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRI 170
            L+M  ++++  +P AL+  +A   +  +    +      ++ +R+  I      CG+R+
Sbjct: 119 DLDMPKVRRT--IPTALSLDEAKRFLKTIEDFNYNGKNNDFLKSRDFCIATFFLNCGMRL 176

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PL 229
           SE   +   ++ DD +T++I GKG+K R + L  +   A+  Y +  P      ++   L
Sbjct: 177 SELCGINMFDLEDD-NTIKILGKGNKERSIYLNKACIHALDNYLEFRP-----EVESKAL 230

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGG-DLRSIQSIL 287
           F       + P   Q  I +     GL P   + H LRH+ AT +   G  D+RS+Q +L
Sbjct: 231 FLSRNKARITPRAVQMMIDKYIVMSGLDPDKYSVHKLRHTAATLMYQYGDVDIRSLQKVL 290

Query: 288 GHFRLSTTQIYTNVNSK 304
           GH  + TT+IYT+V+ +
Sbjct: 291 GHESVQTTEIYTHVSDE 307


>gi|254228151|ref|ZP_04921580.1| integron integrase subfamily [Vibrio sp. Ex25]
 gi|151939224|gb|EDN58053.1| integron integrase subfamily [Vibrio sp. Ex25]
          Length = 335

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 87/194 (44%), Gaps = 38/194 (19%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL-------- 202
           ID R    + LLYG GLR+ E L L  Q+I  D   +R+ QGKG K R V L        
Sbjct: 133 IDPRYKLHIQLLYGSGLRVMECLRLRVQDIDYDYGAVRVWQGKGGKNRTVTLAKELHEPL 192

Query: 203 ----------------LPS-----VRKAILEYYDLCPFDLNLNIQLPLFR--------GI 233
                           +P      + + +   Y     D N +   P  +         +
Sbjct: 193 KAQVNLARDYYFKDRHMPGYAGVYISEGLRRKYPKAELDFNWHFLFPSTKLSTDRDTGEL 252

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N    QR +++      +  + T HTLRHSFATHLL +G D+R++Q  LGH  + 
Sbjct: 253 RRHHINESAIQRAVKRAATDACIEKTVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVK 312

Query: 294 TTQIYTNVNSKNGG 307
           TTQIYT+V  +  G
Sbjct: 313 TTQIYTHVIERGAG 326


>gi|116254508|ref|YP_770344.1| putative phage integrase protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115259156|emb|CAK10271.1| putative phage integrase protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 303

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 21/225 (9%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +K+   S+  ++S ++   K   +R    E  +L +   KK   LP  L+  +    +  
Sbjct: 70  KKLAPSSIHTAISALRFLYKVTLERDWVPE-EVLPLP--KKPQKLPIILSPDEVQHFLGC 126

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRI 199
           VL          D ++ AIL   Y  GLRISEA+ L P +I   +  +R+ QGKG K R 
Sbjct: 127 VL----------DPKHHAILTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEQGKGQKDRY 176

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPL 258
           V L P + + + +Y+ +         +  LF G R G+P+          +      L  
Sbjct: 177 VMLSPKLLEILRDYWKM------RRPKAWLFPGDRAGQPITRDAVGEACAKAHNLSRLSK 230

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             T H+LRH+FA HLL  G D+R+IQ +LGH  L+TT  Y  + +
Sbjct: 231 PVTPHSLRHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIAT 275


>gi|148642488|ref|YP_001273001.1| phage integrase family integrase/recombinase [Methanobrevibacter
           smithii ATCC 35061]
 gi|148551505|gb|ABQ86633.1| integrase-recombinase protein, phage integrase family
           [Methanobrevibacter smithii ATCC 35061]
          Length = 302

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 94/183 (51%), Gaps = 9/183 (4%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKW---IDARNSAILYLLYGCGLRISEALSL 176
           K+  S P  L +K+   L+D++    + ++ +      R+  I+ LLY  GLR+SE ++L
Sbjct: 121 KRIKSPPNFLTQKEVKQLLDSITWDENSDSDFRIITKLRDKLIVTLLYSSGLRVSELINL 180

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
           +  N+  +   L I GK +  R++ L  S ++ I +Y +      N      L     G 
Sbjct: 181 SVDNVNFEGKQLSIVGKNNS-RVILLDESTKQLIQKYLEKRTQKSNY-----LVVNKSGN 234

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           PL P   Q  I++     G+    T H LRHS+ATHL   G +++ IQ +LGH  LSTTQ
Sbjct: 235 PLTPRYVQLMIKKYGNESGIEKKITPHILRHSYATHLFEQGVNIKIIQQLLGHSNLSTTQ 294

Query: 297 IYT 299
           IY+
Sbjct: 295 IYS 297


>gi|20807762|ref|NP_622933.1| integrase [Thermoanaerobacter tengcongensis MB4]
 gi|34222924|sp|Q8RAB1|XERDL_THETN RecName: Full=Tyrosine recombinase xerD-like protein
 gi|20516317|gb|AAM24537.1| Integrase [Thermoanaerobacter tengcongensis MB4]
          Length = 290

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 142/303 (46%), Gaps = 27/303 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L+  + LSK TL+SY  D  QFL ++    E  I   + ++ +      F+   + 
Sbjct: 9   FLEFLKKNKRLSKNTLESYSRDVEQFLTYM---NEHGINFCSAKKSTIVNYLYFL---KQ 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     ++ R+LS IK+F  YL  +K   E     +   K     P  L  +Q      +
Sbjct: 63  QGKSQATISRALSSIKAFYHYLFAKKKIEEDPSYGINAPKVEKKEPVTLTVEQV-----D 117

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +LL           R+ A++ L+Y  GL++SE +SL  +++  + ++  I  +  K R++
Sbjct: 118 MLLSFDFGKDEKGLRDKALIELMYASGLKVSEVISLKIEDV--NLASGYIVVRSGKERVI 175

Query: 201 PLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL--GL 256
           P+      A+ EY +    P       +  LF  +RGK L      + I++    +  GL
Sbjct: 176 PIGSYAVAALQEYIEKGRKP----RKGEKALFLNLRGKRLTRQGCWKIIKEYADKISPGL 231

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           PL  T + LR SFA H+L NG DL+++Q +LG+          N+ S      M E+Y++
Sbjct: 232 PL--TPNILRKSFAQHMLQNGADLKTVQEMLGY----EVNFGNNLLSLVSRSKMKEVYNK 285

Query: 317 THP 319
            HP
Sbjct: 286 FHP 288


>gi|169826674|ref|YP_001696832.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41]
 gi|168991162|gb|ACA38702.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41]
          Length = 277

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 129/274 (47%), Gaps = 34/274 (12%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
            S  T++SY+    QF      ++E +     +R     +IR +++    + +  RS++ 
Sbjct: 17  FSSETIRSYKISLSQF------FSESEKNYDEVRA---KDIRNWLATLSEKGLKIRSIQL 67

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L+ +KSF +Y  +      +    ++  K  + LP  LN++Q   L          E  
Sbjct: 68  KLTALKSFYQYCIEENKINHNPTKKVKTPKSEDLLPYYLNKRQLALL---------QELT 118

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKA 209
             + R  AI+ +LY  G+RI+E L++  ++I  D   + I +GKG+K R V         
Sbjct: 119 KDNLRERAIVEVLYATGVRINELLNIKLEDIKWDTRQIWIRKGKGNKDRFVLFSHECALR 178

Query: 210 ILEY----YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           +  Y    Y+   F         LF   RGK ++  + Q + R+  + LG  +  T HTL
Sbjct: 179 LKNYLHVRYENSDF---------LFSSPRGKHISCDLVQLFFRKYSKELGFKV--TPHTL 227

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           RH+FA HL   G +   IQ +LGH  +++T+IYT
Sbjct: 228 RHTFAAHLAEKGMEFIYIQDLLGHANINSTRIYT 261


>gi|300872273|gb|ADK38964.1| IntI4 [Vibrio sp. V4(2010)]
          Length = 290

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 90/188 (47%), Gaps = 38/188 (20%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206
           +D ++   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V     L P +
Sbjct: 95  VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 154

Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233
           ++ I     YYD                        P++   +   P F+         +
Sbjct: 155 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 214

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH  + 
Sbjct: 215 RRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 274

Query: 294 TTQIYTNV 301
           TT  YT+V
Sbjct: 275 TTTNYTHV 282


>gi|254167351|ref|ZP_04874203.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|197623614|gb|EDY36177.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
          Length = 279

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 120/250 (48%), Gaps = 33/250 (13%)

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPRA 128
           + ++S +R  K    SL  +   I+S+ KY          N+   +NL   K+   +P+ 
Sbjct: 55  KMYLSTKR--KYSKNSLYLATKAIRSYFKY---------KNLDTAKNLSSPKRPKQMPKY 103

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+E +   L+         E    + R+ AI+ LL   GLR+SE  +L  +++  ++  +
Sbjct: 104 LSEDEVKRLI---------EASSENPRDYAIISLLAYSGLRVSELCNLKIEDVDFNERIV 154

Query: 189 RIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
            ++ GKGDK RIV + P V +A+  Y      D+       LF   +   ++     R +
Sbjct: 155 YVRSGKGDKDRIVVVSPRVIEALQNYLYTREDDMEY-----LFASQKSNKISRVQVFRIV 209

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++     G+    T H LRH+ AT LL  G D+R IQ  LGH  ++TTQIYT+V+     
Sbjct: 210 KKYAEKAGIKKEVTPHVLRHTLATTLLRRGVDIRFIQQFLGHSSVATTQIYTHVDDA--- 266

Query: 308 DWMMEIYDQT 317
             +  +YD+ 
Sbjct: 267 -LLKSVYDKV 275


>gi|218128919|ref|ZP_03457723.1| hypothetical protein BACEGG_00491 [Bacteroides eggerthii DSM 20697]
 gi|217988882|gb|EEC55199.1| hypothetical protein BACEGG_00491 [Bacteroides eggerthii DSM 20697]
          Length = 350

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 148/308 (48%), Gaps = 29/308 (9%)

Query: 21  WLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA---FIS 76
           W  + L I RG S  T +SY     Q++ FL    E+K+T  T+   SY++       + 
Sbjct: 18  WFTSYLPIARGCSSHTQRSYFTALSQYMQFLQ--EEKKVTPNTLSAESYSKSNLNDWLLW 75

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            ++T+K  + +    LSG+KSF+K+L  + I   +  ++ + +K   ++ + ++E+    
Sbjct: 76  LKKTRKCSNSTCNDRLSGVKSFIKFLSIKDIRFNAVYISSKEIKPMRTV-KVIHEEITQK 134

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----MDDQSTLRIQG 192
            + ++      +T+    R+ AI YL+Y  G RI E LS+   ++      + + L I G
Sbjct: 135 AIKSLFSTIRTDTR-TGKRDLAIFYLIYSIGARIDEILSVKICDLHLHEYPNPNYLTIIG 193

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLC---PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           KG K R  P+L  V K +L Y ++     F  +  +    + G + K     + +R    
Sbjct: 194 KGYKCRTPPILKDVTKILLRYIEVFHNNDFASHSYLFYSFYNGEKKKISQEAINKR---- 249

Query: 250 LRRYLG--------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ--IYT 299
           L+ Y          +P +   H+LRH+ A+H L  G ++ +IQ ++GH  + TT   I+ 
Sbjct: 250 LKMYAAKANEIDKCVPRNLHCHSLRHARASHWLEQGLNIIAIQRLMGHADIRTTMRYIFV 309

Query: 300 NVNSKNGG 307
           +V  KN  
Sbjct: 310 SVEQKNKA 317


>gi|218709877|ref|YP_002417498.1| Site-specific recombinase IntIA [Vibrio splendidus LGP32]
 gi|218322896|emb|CAV19073.1| Site-specific recombinase IntIA [Vibrio splendidus LGP32]
          Length = 324

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 88/178 (49%), Gaps = 38/178 (21%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI-------LEY 213
           L+YG GLR+ E L L  Q+I  D  ++R+ QGKG K RIV + P +  +I        EY
Sbjct: 129 LMYGSGLRLMECLRLRMQDIDYDYKSVRVWQGKGGKNRIVTIAPELFPSIKLQQQKSAEY 188

Query: 214 YDLCPFDLNLN-IQLP------------------LFRGIRGKP-----------LNPGVF 243
           Y     D   + + LP                  LF   R  P           ++P   
Sbjct: 189 YQQDIHDKAFSGVYLPDSLAKKYPSAERSLNWQFLFPSARLAPDLRTGELRRHHIHPTAL 248

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           Q++I+   +   +  + + HTLRHSFATHLL +G D+R++Q  LGH  L TTQIYT++
Sbjct: 249 QKHIKVASQKADIEKNISCHTLRHSFATHLLQSGADIRTVQEQLGHTDLKTTQIYTHI 306


>gi|269958271|ref|YP_003328058.1| tyrosine recombinase [Anaplasma centrale str. Israel]
 gi|269848100|gb|ACZ48744.1| tyrosine recombinase [Anaplasma centrale str. Israel]
          Length = 312

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 137/312 (43%), Gaps = 29/312 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L   R +S  T  SY  D      FL       +        S  ++RA++    +
Sbjct: 10  FLEYLVSGRCVSPNTSSSYRSDLEDLAEFLGRRNLRMV------DASAADLRAYVRSLNS 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     ++ R ++ I+    +L   +I       N+ + K    LP+ L   +    VD 
Sbjct: 64  RGYSPATISRRVAAIRGLYGFLYGDRIIDGDPAANLDSCKLGRPLPKVLTVDE----VDK 119

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-------MDDQSTLRIQGK 193
           +L     +      R +AI+ +LY  G+RISE ++L   +I         D   L I+GK
Sbjct: 120 LLRAAGSDLSVEGRRTAAIVNILYSSGVRISELINLGFYDIESMLKEQRSDVGHLVIKGK 179

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRR 252
             + R++ L      +I+ Y  L   D  +  Q    R +  G   +  + ++ + QL +
Sbjct: 180 AGRERLILLNEVAIASIVAY--LAVRDHFIVGQKSESRWLFPGAKFDQCISRQRVGQLLK 237

Query: 253 YLGL-----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            L +     P   + H LRHSFATHLL+NG ++  IQ +LGH  LSTTQIYT V      
Sbjct: 238 ALAIVAGVDPKRISPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYV----AN 293

Query: 308 DWMMEIYDQTHP 319
           D + E     HP
Sbjct: 294 DRLKEALQTFHP 305


>gi|289596337|ref|YP_003483033.1| integrase family protein [Aciduliprofundum boonei T469]
 gi|289534124|gb|ADD08471.1| integrase family protein [Aciduliprofundum boonei T469]
          Length = 284

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 119/250 (47%), Gaps = 33/250 (13%)

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPRA 128
           + ++S +R  K    SL  +   I+S+ KY          N+   +NL   K+   +P+ 
Sbjct: 60  KMYLSTKR--KYSKNSLYLATKAIRSYFKY---------KNLDTAKNLSSPKRPRQMPKY 108

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+E +   L+         E    + R+ AI+ LL   GLR+SE  +L  +++  ++  +
Sbjct: 109 LSEDEVKRLI---------EASSENPRDYAIISLLAYSGLRVSELCNLKIEDVDFNERIV 159

Query: 189 RIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
            +  GKGDK RIV + P V +A+  Y      D+       LF   +   ++     R +
Sbjct: 160 YVHSGKGDKDRIVVVSPRVIEALQNYLYTREDDMEY-----LFASQKSNKISRVQVFRIV 214

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++     G+    T H LRH+ AT LL  G D+R IQ  LGH  ++TTQIYT+V+     
Sbjct: 215 KKYAEKAGIKKEVTPHVLRHTLATTLLRRGVDIRFIQQFLGHSSVATTQIYTHVDDA--- 271

Query: 308 DWMMEIYDQT 317
             +  +YD+ 
Sbjct: 272 -LLKSVYDKV 280


>gi|110802806|ref|YP_698501.1| site-specific tyrosine recombinase XerC [Clostridium perfringens
           SM101]
 gi|110683307|gb|ABG86677.1| site-specific recombinase, phage integrase family [Clostridium
           perfringens SM101]
          Length = 450

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 149/307 (48%), Gaps = 34/307 (11%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT--EEKITIQTIRQLSYTEIR----- 72
           N+L+N+   +G S  T + Y  D   F  FL  Y   E  I ++ I ++  +++      
Sbjct: 141 NYLENV---KGKSLNTAKGYSVDLGLFFKFLKVYKGLENNIELEKIEEVEISDLGDNFIK 197

Query: 73  -----------AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLK 120
                      AF+ K R      R+  R ++ +KSF K+L  + K+  E+  + + + K
Sbjct: 198 DITLSDIYAFLAFLEKVRNNSAYARA--RKVATLKSFFKFLNSKIKLIDENPTVELESPK 255

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
            +   P  L   Q++T++++  ++ S++  +   R+  IL L   CG+R+SE  ++  + 
Sbjct: 256 INKRHPVYLTLDQSITVLNS--MNKSNKNYY---RDYCILTLFLNCGMRLSELCNIEIEK 310

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLN 239
           I  D  TL I GKG+K R V L  +   AI  Y  +          +  LF   + +P+N
Sbjct: 311 IKGD--TLTIIGKGNKERTVYLNEASIAAIENYLKNRNDSKATEEAKKYLFLSSKYRPIN 368

Query: 240 PGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQI 297
               +  +++     G      T H LRH+ AT +   G  D+RS+Q+ILGH  +STTQI
Sbjct: 369 KRSVEILVKKHIENAGFKDQKYTPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQI 428

Query: 298 YTNVNSK 304
           YT+V+ +
Sbjct: 429 YTHVDDE 435


>gi|260892612|ref|YP_003238709.1| integrase family protein [Ammonifex degensii KC4]
 gi|260864753|gb|ACX51859.1| integrase family protein [Ammonifex degensii KC4]
          Length = 285

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 133/278 (47%), Gaps = 29/278 (10%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           + RGLS  T + Y    R+F  +L            I +++  ++ ++  +R  Q+ G +
Sbjct: 15  LSRGLSPGTAEVYLGHVRRFFGWLG--------CADITEVTPFDVASY--RRHLQEKGRK 64

Query: 87  --SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             ++  +L+ + SF  + K+  + +      +R + +    PR L +++    +  V  H
Sbjct: 65  PATVNNALNALSSFFSWAKEAGLVSSDPTEGVRQVPEDRPAPRWLGKRELGRFLRAVQKH 124

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPL 202
            S        R+ A++ LL   GLR+SEA+SL  ++++  +    +R++GKG K R VPL
Sbjct: 125 GS-------PRDRALVALLLHAGLRVSEAVSLRLEDVVIRERSGFVRVRGKGGKYREVPL 177

Query: 203 LPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
             +VR+ + EY  +L P +        LF G  G+ L     ++   +L R  G+    T
Sbjct: 178 NVTVRRVLKEYLAELPPQEGGW-----LFPGKGGEYLTRFAVEKLFARLSRLSGV--EVT 230

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            H LRH+F   L+  G  L  +  + GH  L+TT  YT
Sbjct: 231 PHRLRHTFCKWLIDAGESLDKVALLAGHSNLNTTARYT 268


>gi|254166742|ref|ZP_04873596.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|197624352|gb|EDY36913.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
          Length = 279

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 119/250 (47%), Gaps = 33/250 (13%)

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPRA 128
           + ++S +R  K    SL  +   I+S+ KY          N+   +NL   K+   +P+ 
Sbjct: 55  KMYLSTKR--KYSKNSLYLATKAIRSYFKY---------KNLDTAKNLSSPKRPRQMPKY 103

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+E +   L+         E    + R+ AI+ LL   GLR+SE  +L  +++  ++  +
Sbjct: 104 LSEDEVKRLI---------EASSENPRDYAIISLLAYSGLRVSELCNLKIEDVDFNERIV 154

Query: 189 RIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
            +  GKGDK RIV + P V +A+  Y      D+       LF   +   ++     R +
Sbjct: 155 YVHSGKGDKDRIVVVSPRVIEALQNYLYTREDDMEY-----LFASQKSNKISRVQVFRIV 209

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++     G+    T H LRH+ AT LL  G D+R IQ  LGH  ++TTQIYT+V+     
Sbjct: 210 KKYAEKAGIKKEVTPHVLRHTLATTLLRRGVDIRFIQQFLGHSSVATTQIYTHVDDA--- 266

Query: 308 DWMMEIYDQT 317
             +  +YD+ 
Sbjct: 267 -LLKSVYDKV 275


>gi|116252427|ref|YP_768265.1| integrase/recombinase protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|116255538|ref|YP_771371.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257075|emb|CAK08169.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115260186|emb|CAK03290.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 292

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 21/225 (9%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +K+   S+  ++S ++   K   +R    E  +L +   KK   LP  L+  +    +  
Sbjct: 59  KKLAPSSIHTAISALRFLYKVTLERDWVPE-EVLPLP--KKPQKLPIILSPDEVQHFLGC 115

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRI 199
           VL          D ++ AIL   Y  GLRISEA+ L P +I   +  +R+ QGKG K R 
Sbjct: 116 VL----------DPKHHAILTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEQGKGQKDRY 165

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPL 258
           V L P + + + +Y+ +         +  LF G R G+P+          +      L  
Sbjct: 166 VMLSPKLLEILRDYWKM------RRPKAWLFPGDRAGQPITRDAVGEACAKAHNLSRLSK 219

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             T H+LRH+FA HLL  G D+R+IQ +LGH  L+TT  Y  + +
Sbjct: 220 PVTPHSLRHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIAT 264


>gi|332522659|ref|ZP_08398911.1| phage integrase, N-terminal SAM domain protein [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332313923|gb|EGJ26908.1| phage integrase, N-terminal SAM domain protein [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 295

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 131/290 (45%), Gaps = 30/290 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L   +  + LS  TL++Y+ D  QF       ++    +  I  L+ + I+        
Sbjct: 9   YLDYCKTHKRLSSHTLRAYKNDLIQFC-----NSDHDCVVSYIEYLTNSAIKT------- 56

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLV- 138
                 +L+R ++ +K F  YL  + I +E+    +R   +   +LP+ +       L  
Sbjct: 57  -----NTLRRKIASLKVFYSYLMTQNIISENPFNQLRFQFRTEKTLPKIIPHNILKNLYA 111

Query: 139 ---DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
                V+   ++  +    RN  I+ +L   G+RISE   +  +NI     TL I GKG 
Sbjct: 112 YLKQKVITSKTNFQRQKAERNLLIVSILLSTGIRISELCHIQIKNINLQNQTLHIFGKGK 171

Query: 196 KIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRR 252
           K RI+ L       +L+ Y  + C           LF G     PL     +  ++ +R+
Sbjct: 172 KERIIFLGDETTVLLLKTYLANYCN-----QSDKYLFPGKFSQNPLTEQSVRLVLKTVRK 226

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            + L  + T H  RHSFAT LL N  D+R IQ ILGH  +S TQIYT+V+
Sbjct: 227 QMNLATTITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISITQIYTHVS 276


>gi|325511227|gb|ADZ22862.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum
           EA 2018]
          Length = 326

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 110/223 (49%), Gaps = 15/223 (6%)

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNI---LNMRNLKKSNSLPRALNEKQALTLVDN 140
           G  S  R ++ I+SF  YL  +K   + N    L    L K N  P  L   QA T +  
Sbjct: 87  GAYSRARKVAAIRSFFNYLTTKKKILDYNPAQELEKPKLPKRN--PVYLTIGQANTFLSG 144

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           + ++  +       RN+ I+ L   CG+R+SE  ++   +I +D   + I GKGDK R V
Sbjct: 145 IKMNKHY------YRNTCIVTLFLNCGMRVSELCNININSIKNDM--ISIIGKGDKERTV 196

Query: 201 PLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
            L      AI +Y +       N+  Q  LF   +G  ++    +  ++++     L ++
Sbjct: 197 YLNDMCIDAINKYIEKERSLQKNIKCQQALFISQKGTRISVRTIENLVKKINEDSKLNIN 256

Query: 260 T-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             T H LRH+FAT +   G D+ S+Q +LGH  +STTQIYT+V
Sbjct: 257 KLTPHKLRHTFATTMYQAGTDIISLQQLLGHSNVSTTQIYTHV 299


>gi|299148759|ref|ZP_07041821.1| integrase/recombinase [Bacteroides sp. 3_1_23]
 gi|301311646|ref|ZP_07217572.1| integrase/recombinase [Bacteroides sp. 20_3]
 gi|15072728|emb|CAC47935.1| TpnF protein [Bacteroides thetaiotaomicron]
 gi|298513520|gb|EFI37407.1| integrase/recombinase [Bacteroides sp. 3_1_23]
 gi|300830387|gb|EFK61031.1| integrase/recombinase [Bacteroides sp. 20_3]
          Length = 279

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 136/274 (49%), Gaps = 27/274 (9%)

Query: 33  KLTLQSYECDT-RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKR 90
           +L +Q Y  +T R +  + + + +      ++ ++  ++I AFI+++ +  KI     K 
Sbjct: 13  RLLMQRYAGNTIRSYKDYASIFLKHVSKYPSLEEIPLSDIEAFINEKVQNGKISVSYQKG 72

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQALTLVDNVLLHTSHET 149
            +  IK   + +  +KI      L+    K+S S LP+  ++++   ++DN         
Sbjct: 73  LVGAIKKMYELILDKKIQ-----LDYLYPKRSFSKLPKFFSKEEVRNILDNTQ------- 120

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRK 208
              + ++ AIL  +Y CGLR+SE L+L  ++I      +RI Q KG+K RIV L   +  
Sbjct: 121 ---NLKHKAILMTIYSCGLRLSELLNLKIKDIKSSDGIIRIHQSKGNKDRIVSLPDKLLA 177

Query: 209 AILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
            +  YY    P +        LF G +G   +    Q  +++      +    + HT RH
Sbjct: 178 TLRHYYQAFKPKEY-------LFEGEKGGKYSERSVQLILKKALIKANVQSEGSVHTGRH 230

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           S+ATHL+ +G D+R ++ +LGH  + TT IYT++
Sbjct: 231 SYATHLIQSGIDIRIVKELLGHENIKTTMIYTHI 264


>gi|332308719|ref|YP_004436569.1| integrase family protein [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332176048|gb|AEE25301.1| integrase family protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 286

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/245 (33%), Positives = 118/245 (48%), Gaps = 36/245 (14%)

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           E+R F      Q   + ++  +LSG    LK+L  + +     +L +  +     LP  L
Sbjct: 54  ELRQFQLALAEQGASNITINATLSG----LKFLFHKTLNLLDVMLKVSTVPVPRKLPTVL 109

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           ++++   L+D      +H  K+  A + A     YG GLRI E ++L   +I   +  LR
Sbjct: 110 SKEEVKQLID-----ATHTIKYKAAFSVA-----YGAGLRIGEVVALKVTDIDSSRMLLR 159

Query: 190 I-QGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNP-GVFQRY 246
           I QGKG K R+  LL +    + ++Y       L LN    LF G    PLNP G     
Sbjct: 160 IEQGKGKKDRMAMLLTT----LCQWYKHAKAHHLMLNGGW-LFPG--QNPLNPIGT---- 208

Query: 247 IRQLRRY-------LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            RQL R         GL    + HTLRHSFA HLL +  D+R IQ++LGH +L TT +Y 
Sbjct: 209 -RQLSRAWKSACIDAGLTKKVSMHTLRHSFAMHLLEDKVDIRVIQTLLGHSKLETTALYA 267

Query: 300 NVNSK 304
            V SK
Sbjct: 268 QVASK 272


>gi|15004784|ref|NP_149244.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum
           ATCC 824]
 gi|14994396|gb|AAK76826.1|AE001438_79 Site-Specific Recombinase, Xerd [Clostridium acetobutylicum ATCC
           824]
          Length = 323

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 110/223 (49%), Gaps = 15/223 (6%)

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNI---LNMRNLKKSNSLPRALNEKQALTLVDN 140
           G  S  R ++ I+SF  YL  +K   + N    L    L K N  P  L   QA T +  
Sbjct: 84  GAYSRARKVAAIRSFFNYLTTKKKILDYNPAQELEKPKLPKRN--PVYLTIGQANTFLSG 141

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           + ++  +       RN+ I+ L   CG+R+SE  ++   +I +D   + I GKGDK R V
Sbjct: 142 IKMNKHY------YRNTCIVTLFLNCGMRVSELCNININSIKNDM--ISIIGKGDKERTV 193

Query: 201 PLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
            L      AI +Y +       N+  Q  LF   +G  ++    +  ++++     L ++
Sbjct: 194 YLNDMCIDAINKYIEKERSLQKNIKCQQALFISQKGTRISVRTIENLVKKINEDSKLNIN 253

Query: 260 T-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             T H LRH+FAT +   G D+ S+Q +LGH  +STTQIYT+V
Sbjct: 254 KLTPHKLRHTFATTMYQAGTDIISLQQLLGHSNVSTTQIYTHV 296


>gi|194396828|ref|YP_002037966.1| integrase [Streptococcus pneumoniae G54]
 gi|307127259|ref|YP_003879290.1| tyrosine recombinase [Streptococcus pneumoniae 670-6B]
 gi|194356495|gb|ACF54943.1| integrase [Streptococcus pneumoniae G54]
 gi|295980935|emb|CBJ57183.1| hypothetical protein [Streptococcus pneumoniae]
 gi|306484321|gb|ADM91190.1| tyrosine recombinase [Streptococcus pneumoniae 670-6B]
          Length = 298

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 135/291 (46%), Gaps = 32/291 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L   +  + LS  T+++Y+ D  QF                    +Y  + ++I +   
Sbjct: 9   YLDYCKTHKRLSSHTIRAYKNDLMQFY-----------------NSNYDNVESYIEELTQ 51

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNE---KQALT 136
             I   +L+R ++ IK F  YLK + I  E+    +R   +    LP+ +     K   +
Sbjct: 52  SNIKTNTLRRKIACIKVFYNYLKYQHIIEENPFNQLRFQFRTEKILPKTIPYDILKNIFS 111

Query: 137 LVDN-VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            ++  V++  +   K    RN  I+ LL   G+RISE   +  ++I     TL I GKG 
Sbjct: 112 YLEQRVVISKTDYQKQKAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLHIIGKGK 171

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRG-KPLNPGVFQRYIRQLR 251
           K RI+ L       +LE Y      +N N +     LF G    KPL+    +  ++++ 
Sbjct: 172 KERILFLGDQTTFNLLETY------INKNGKESNDFLFPGKHSPKPLSEQSVRLILKRIV 225

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              GL  + T H  RHSFAT LL N  D+R IQ ILGH  +S TQIYT+V+
Sbjct: 226 EQNGLSKTITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISITQIYTHVS 276


>gi|15894453|ref|NP_347802.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum
           ATCC 824]
 gi|15024091|gb|AAK79142.1|AE007632_7 Integrase/recombinase (xerD/xerC family) [Clostridium
           acetobutylicum ATCC 824]
 gi|325508584|gb|ADZ20220.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum
           EA 2018]
          Length = 299

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 125/245 (51%), Gaps = 18/245 (7%)

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNLKK-S 122
           + Y EI+ FI+          +++R +  +K F +YL + KI  ++  + ++ R+L K  
Sbjct: 52  IDYREIKKFINYLIKNGRAATTIRRKIISLKLFFQYLDQEKIVLDNPFDKIDKRDLPKIP 111

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             LP++L+ ++   L+++V    S  T     R+  I+ +    G+R+SE +SL   NI+
Sbjct: 112 KRLPKSLSIEECKRLINSV---NSRNT----IRDKCIIIIFLSTGMRLSELISLNVDNIL 164

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           +++  +RI GK +K R+V L    +K +  Y    P +L       LF   R   +  G 
Sbjct: 165 EEE--IRIIGKENKERVVYLTDQAKKIVKLYIKQRPKNLKTK---ALFLSERNGRIARGT 219

Query: 243 FQRYIRQLRRYLGLPLSTTA--HTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYT 299
            Q  IR      G+        H LRH+FAT L  +G  DL  +Q +LGH  +STT+IYT
Sbjct: 220 VQNAIRNAMYNAGIKGDNDVLVHILRHTFATLLYQSGEVDLFQLQELLGHEDVSTTRIYT 279

Query: 300 NVNSK 304
           +V+ +
Sbjct: 280 DVSKE 284


>gi|227499531|ref|ZP_03929638.1| possible tyrosine recombinase XerC [Anaerococcus tetradius ATCC
           35098]
 gi|227218410|gb|EEI83661.1| possible tyrosine recombinase XerC [Anaerococcus tetradius ATCC
           35098]
          Length = 329

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 162/323 (50%), Gaps = 32/323 (9%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTR---QFLIFLAFYT------EE 56
           + EI+S  +L +  N+L+++   RGLS  T++ Y  D     +F++    Y       +E
Sbjct: 1   MKEIISPIILTDYLNYLKSI---RGLSSNTIREYNYDLNLMIRFMLVRKIYYGDFERFDE 57

Query: 57  KITIQTIRQ---------LSYTEIRAFISKRRTQKIGDRSLK-RSLSGIKSFLKYLKKRK 106
           +   ++I +         LS  +  +++S     K    S + R +S I+SF KYL    
Sbjct: 58  QFDPESINKIVDPKFFETLSLQDFYSYLSYLDNDKSDLASTRSRKISAIRSFYKYLFSEI 117

Query: 107 ITTESNILN-MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
              ++NI + + N K S   P  L  ++   L++ V      + +++  R+ AI++    
Sbjct: 118 EVIDTNISDKLTNPKISQRQPVYLTLQETEKLLETV---KGEQNEFLKCRDLAIIFTFLT 174

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLN 224
            G+R+SE +S+  ++I +D     I GKG+K R + L  +    I +Y ++   +  N++
Sbjct: 175 TGMRLSELVSVNLRDISNDH--FNIIGKGNKERTIYLTSNCIDLIEKYIEVRGKYVKNID 232

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DLRS 282
           I   LF   R K ++    Q  I +  +  G  +S  + H LRH+ AT +   G  D+R+
Sbjct: 233 ID-ALFISTRKKRISNRAVQSTIDKYLKKAGFDVSVYSTHKLRHTAATLMYKYGNVDIRA 291

Query: 283 IQSILGHFRLSTTQIYTNVNSKN 305
           ++ ILGH  +STTQIYT+++ ++
Sbjct: 292 LKDILGHANVSTTQIYTHLDDED 314


>gi|304404723|ref|ZP_07386384.1| integrase family protein [Paenibacillus curdlanolyticus YK9]
 gi|304346530|gb|EFM12363.1| integrase family protein [Paenibacillus curdlanolyticus YK9]
          Length = 307

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 144/307 (46%), Gaps = 40/307 (13%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W+++    RG SK T Q Y  D     I L   +     + +IR++   ++ + ++  R 
Sbjct: 16  WMKD----RGYSKDTQQGYLND-----IQLLCRSLRGKPLPSIRKI---DVMSHLTDARE 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK-KSNSLPRALNEKQALTLVD 139
           +  GD +  R+LS I+ F K + + +    +   ++   K + N LP  L E     L+ 
Sbjct: 64  RGAGDGARNRALSAIRLFFKVMIEFERMEHNPAADVSKSKVEKNRLPLYLEESYLGDLLR 123

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           +V             R+ A+L L+  CGLR+SE   L  Q+   +   L I GKG K R 
Sbjct: 124 SV-------EGNFRVRDIAMLALMSYCGLRVSEVSQLNLQDFDPEAGQLSILGKGRKWRY 176

Query: 200 VPLLPSV----RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN--------PGVFQRYI 247
           +PL PS+    ++ + E   + P   N   + P F    G+ ++           F+++ 
Sbjct: 177 IPLQPSIITLLKQCLQER--IPPKRKN---EHPFFVSRLGRRISRRTVQFIVERTFEQFK 231

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +Q         S  AH LRHSFAT+LLS    DLR++Q +LGH  +STTQIYT++  K  
Sbjct: 232 QQHEHMAERKFS--AHKLRHSFATNLLSTDKVDLRTLQELLGHADISTTQIYTHITDKKK 289

Query: 307 GDWMMEI 313
              M  +
Sbjct: 290 KQAMAAV 296


>gi|198275042|ref|ZP_03207574.1| hypothetical protein BACPLE_01201 [Bacteroides plebeius DSM 17135]
 gi|198272489|gb|EDY96758.1| hypothetical protein BACPLE_01201 [Bacteroides plebeius DSM 17135]
          Length = 372

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 16/204 (7%)

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           +K+  ++ +  E     +   K+  +LP  L++++   ++D  +          D R   
Sbjct: 162 IKFYYEKVLGQERRCYKVNRAKREKTLPDVLSKEEIKKILDATV---------TDLRFFC 212

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC 217
           +  +LY  GLRISE L L P +I + +S +R+ QGKG K R   L   + K + EY  L 
Sbjct: 213 MFSILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSKPLMKKLTEYNRL- 271

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
                   ++ LF    G+P    +  + ++   R  G+      H LRHSFA HLL  G
Sbjct: 272 -----YKPKVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFAPHLLEQG 326

Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301
            D++ ++ ++GH  + TT+ Y ++
Sbjct: 327 TDIKIVKELMGHNNIKTTERYVHI 350


>gi|254994614|ref|ZP_05276804.1| integrase/recombinase [Anaplasma marginale str. Mississippi]
          Length = 267

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 123/266 (46%), Gaps = 23/266 (8%)

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           S  ++RA++    ++     ++ R +S I+    +L   +I       N+ + K    LP
Sbjct: 5   SAADLRAYVRSLNSRGYSPATVARRISAIRGLYGFLYGDRIIDGDPAANLDSCKLGRPLP 64

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----- 181
           + L   +    VD +L     +      R +AI+ +LY  G+RISE ++L   +I     
Sbjct: 65  KVLTVDE----VDKLLCAAGSDLSVEGRRTAAIVNILYSSGVRISELINLGFYDIESMLK 120

Query: 182 --MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPL 238
               D   L I+GK  + R++ L      +I+ Y  L   D  +  Q    R +  G   
Sbjct: 121 EQRSDVGHLVIKGKAGRERLILLNEVAIASIVAY--LAVRDHFIVGQKSESRWLFPGAKF 178

Query: 239 NPGVFQRYIRQLRRYLGL-----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           +  + ++ + QL + L +     P   + H LRHSFATHLL+NG ++  IQ +LGH  LS
Sbjct: 179 DQCISRQRVGQLLKALAIVAGVDPKRISPHKLRHSFATHLLNNGSNVVFIQKMLGHASLS 238

Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHP 319
           TTQIYT V      D + E     HP
Sbjct: 239 TTQIYTYV----ANDRLKEALQTFHP 260


>gi|254518744|ref|ZP_05130800.1| phage integrase [Clostridium sp. 7_2_43FAA]
 gi|226912493|gb|EEH97694.1| phage integrase [Clostridium sp. 7_2_43FAA]
          Length = 292

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 137/294 (46%), Gaps = 27/294 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T+ +Y  D   ++ +L      K    +I +     +  +I    +Q   +RS+ R 
Sbjct: 18  SENTVYAYVTDVNLYVKYL------KSKNMSIDETDNVSVLGYIQYLLSQGKSERSINRI 71

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           +  ++SF  YLK +K+ +E   +  +N   +  LP  L     +  VD ++       K 
Sbjct: 72  VISLRSFYNYLKDQKVVSEIPKIYYKNTTTTKKLPEIL----TIDEVDRII-------KI 120

Query: 152 IDA------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           +D       R++A+L L+Y  G+++SE + L   +I  + + ++     +  R++P+  S
Sbjct: 121 VDKDCNKGIRDNALLELMYATGMKVSEIIGLNVYDINLELNFVKCHDNKNYERLIPIGRS 180

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
             +A+ EY  +     +  ++  LF  + G  L      R +++     G+      +T 
Sbjct: 181 ATEALKEYLKIRDQVASAGVE-TLFVNLNGNHLTRQGVWRIVKEYSHKAGIKKEVNLNTF 239

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           RHSFA HLL NG ++R++Q +LG+  L+    Y  + +    D +  +Y  +HP
Sbjct: 240 RHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTYYEIIN---NDKINIVYKNSHP 290


>gi|12831419|gb|AAK02076.1| site-specific recombinase IntIA [Vibrio parahaemolyticus]
          Length = 320

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 138/322 (42%), Gaps = 65/322 (20%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKRRTQKIGD 85
           + R  +  T++SY    ++F++F       K++    IR LS+  I         +K+  
Sbjct: 14  LTRHYANKTIESYLFWIKRFIVFHQLAHPSKLSEDDVIRFLSHLAI--------DEKVAV 65

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV--DNVLL 143
           ++   +L+ I    +   K  ++     L+MR         ++L EK+   ++  D V  
Sbjct: 66  KTQALALNAISFLYRDFFKTPLS-----LDMR-------FQKSLTEKKLPVVLTRDEVRR 113

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL 202
              H    ID R    + LLYG GLRI E L L  Q+I  D   +R+ QGKG K R V L
Sbjct: 114 FVQH----IDPRYKLHIQLLYGSGLRIMECLRLRIQDIDYDYGAVRVWQGKGGKNRTVTL 169

Query: 203 ------------------------LPS-----VRKAILEYYDLCPFDLNLNIQLPLFR-- 231
                                   +P      + + +   Y     D N +   P  +  
Sbjct: 170 AKELHEPLKSQMNLARNYYFKDRHVPGYAGVYISEGLRRKYPNAELDFNWHFLFPSNKLS 229

Query: 232 ------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
                  +R   +N    QR +++      +  + T HTLRHSFATHLL +G D+R++Q 
Sbjct: 230 VDKETGQLRRHHINESAIQRAVKRSALDANIEKTVTCHTLRHSFATHLLESGADIRTVQE 289

Query: 286 ILGHFRLSTTQIYTNVNSKNGG 307
            LGH  + TTQIYT+V  +  G
Sbjct: 290 QLGHTDVKTTQIYTHVIERGAG 311


>gi|167754200|ref|ZP_02426327.1| hypothetical protein ALIPUT_02493 [Alistipes putredinis DSM 17216]
 gi|167658825|gb|EDS02955.1| hypothetical protein ALIPUT_02493 [Alistipes putredinis DSM 17216]
          Length = 372

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 16/204 (7%)

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           +K+  ++ +  E     +   K+  +LP  L++++   ++D  +          D R   
Sbjct: 162 IKFYYEKVLGQERRCYKVNRAKREKTLPDVLSKEEIKKILDVTV---------TDLRFFC 212

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC 217
           +  +LY  GLRISE L L P +I + +S +R+ QGKG K R   L   + K + EY  L 
Sbjct: 213 MFSILYSAGLRISELLELKPGDINEPRSLIRVRQGKGKKDRYTLLSKPLMKKLTEYNRL- 271

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
                   ++ LF    G+P    +  + ++   R  G+      H LRHSFATHLL  G
Sbjct: 272 -----YKPKVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQG 326

Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301
            D++ ++ ++GH  + TT+ Y ++
Sbjct: 327 IDIKIVKELMGHNNIKTTERYVHI 350


>gi|110799420|ref|YP_695812.1| site-specific tyrosine recombinase XerC [Clostridium perfringens
           ATCC 13124]
 gi|110674067|gb|ABG83054.1| site-specific recombinase, phage integrase family [Clostridium
           perfringens ATCC 13124]
          Length = 450

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 147/307 (47%), Gaps = 34/307 (11%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT--EEKITIQTIRQLSYTEIR----- 72
           N+L+N+   +G S  T++ Y  D   F  FL  Y   E  I ++ I ++  +++      
Sbjct: 141 NYLENV---KGKSVNTIKGYSVDLGLFFKFLKVYKGLENNIELEKIEEVEISDLGDNFIK 197

Query: 73  -----------AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLK 120
                      AF+ K R      R+  R ++ +KSF K+L  + K+  E+  + + + K
Sbjct: 198 DITLSDIYAFLAFLEKVRNNSAYARA--RKVATLKSFFKFLNSKIKLIDENPTVELESPK 255

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
            +   P  L   Q++T+++++      E K    R+  IL L   CG+R+SE  ++  + 
Sbjct: 256 INKRHPVYLTLDQSITVLNSM----DKENKNY-YRDYCILTLFLNCGMRLSELCNIEIEK 310

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLN 239
           I  D  TL I GKG+K R V L  +   AI  Y  +          +  LF   + +P+N
Sbjct: 311 IKGD--TLTIIGKGNKERTVYLNEASIAAIENYLKNRNDSKATEEAKKYLFLSSKYRPIN 368

Query: 240 PGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQI 297
               +  +++     G      T H LRH+ AT +   G  D+RS+Q+ILGH  +STTQI
Sbjct: 369 KRSVEILVKKHIENAGFKDQKYTPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQI 428

Query: 298 YTNVNSK 304
           YT+V+ +
Sbjct: 429 YTHVDDE 435


>gi|310827797|ref|YP_003960154.1| phage integrase [Eubacterium limosum KIST612]
 gi|308739531|gb|ADO37191.1| phage integrase [Eubacterium limosum KIST612]
          Length = 320

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 144/292 (49%), Gaps = 33/292 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTE-------------EKITIQTIRQLSYTEIRAFI 75
           RG S  TL SY  D  QF  FL    +             + + ++ I+Q++  +I AF+
Sbjct: 20  RGFSPNTLISYRNDLMQFFRFLKVRFQLADPDAEFDTISIDDVDLKVIKQVTLPDIYAFL 79

Query: 76  SKRRTQKIG-DRSLKRSLSGIKSFLKYLK---KRKITTESNILNMRNLKKSNSLPRALNE 131
           S   +++   D + KR  + IK+   YL      K+   +  L +  +K  +  P  L  
Sbjct: 80  SYATSKRSNIDSTRKRKTAAIKNLYHYLTTVIDTKMDDPTQRLEIPKVKSRD--PVYLTL 137

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            +AL+L++ V      + ++ + R+ AI+ L   CG+R+SE  +L  ++I   + T+ I 
Sbjct: 138 DEALSLLNAV------DGEFYE-RDLAIITLFLNCGIRLSELTNLKIEDIQ--EETIHIV 188

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG+K R + L  +  + +  Y  + P D ++     +F   R  PL+    Q  +++  
Sbjct: 189 GKGNKERNIRLNDACVETLEAYMAVRPEDTDVPY---VFLSKRKTPLSNRTVQSMVKKYV 245

Query: 252 RYLGLPLS-TTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNV 301
              GL     + H LRH+ AT +   G  D+R++Q +LGH  +STT+IYT++
Sbjct: 246 LKAGLNADKISVHKLRHTAATLMHKYGQVDIRTLQKVLGHESISTTEIYTHI 297


>gi|283798528|ref|ZP_06347681.1| integrase/recombinase XerD [Clostridium sp. M62/1]
 gi|291073790|gb|EFE11154.1| integrase/recombinase XerD [Clostridium sp. M62/1]
 gi|295090134|emb|CBK76241.1| tyrosine recombinase XerD subunit [Clostridium cf. saccharolyticum
           K10]
          Length = 287

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 131/287 (45%), Gaps = 12/287 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  E + ++  L   + +S+ T+ SY  D  QF  ++A        +    +++ T + +
Sbjct: 1   MFDEVEKFVGYLRDVKKMSQNTILSYRRDLLQFASYMA-----DRGVAEAGKVTKTSLDS 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +I     +     ++ R L+ IK+F  Y         +    +R  K     P  L+ ++
Sbjct: 56  YILFLEREGKAAATISRMLASIKAFFHYESTEGYIKRNPAEMIRAPKIEKKAPSILSVEE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++     T  E      R+ A+L LLY  G+R+SE ++L   +I      +     
Sbjct: 116 VTRLLNQPGGRTPKEI-----RDKAMLELLYATGIRVSELMNLNLHHINMTIGFITCSDS 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRR 252
           G + R +P     +KA+ +Y      +L    +   LF    G  ++   F + I+    
Sbjct: 171 GRE-RTIPFGRVAKKALDDYLKNSRPELTKKKESDWLFVNCSGGQMSRQGFWKIIKYYGE 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
             G+    T HTLRHSFA HL+S+G D++++Q ILGH  ++TTQ+Y 
Sbjct: 230 KAGIQTDITPHTLRHSFAAHLISSGADMKAVQQILGHSDMATTQMYA 276


>gi|269127047|ref|YP_003300417.1| integrase family protein [Thermomonospora curvata DSM 43183]
 gi|268312005|gb|ACY98379.1| integrase family protein [Thermomonospora curvata DSM 43183]
          Length = 314

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 143/319 (44%), Gaps = 44/319 (13%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L  +RGL+  TL SY  D R++   L     E+     I +++  ++  +++  R 
Sbjct: 14  YLAHLAADRGLAANTLSSYRRDLRRYAQAL----RERGRC-AIGEVTEADVLGYLAGLRE 68

Query: 81  -----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                + + DRS  R+++ ++   ++  +  +        +R        P+A++  +  
Sbjct: 69  GDAAHRPLSDRSAARAVAAVRGLHRFAVREGLAAADPAAGVRPPASPKRRPKAISVAE-- 126

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
             V+ +L   + E      R+ A+L LLYG G RISEA++L   ++      +R+ GKG 
Sbjct: 127 --VERLLAAAASEGTPRGLRDRALLELLYGSGARISEAVALDVDDLDLKAGLIRLTGKGG 184

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLN-PGVFQ--RYIRQL 250
           ++R VP+    R+A+  Y       L  +      LF   RG  L+  G +   R   Q 
Sbjct: 185 RVRRVPVGEHARRAVEAYLRQARPHLAKDGTAGAALFLNARGGRLSRQGAWMVLRAAAQR 244

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            R +G+    + HTLRHSFATHLL  G D   +  +LG           NV+++ G    
Sbjct: 245 ARLVGV----SPHTLRHSFATHLLDGGADAGVVHQLLG-----------NVSAEQGRGGR 289

Query: 311 M----------EIYDQTHP 319
           M          E++   HP
Sbjct: 290 MYALVTQGLLTEVHAMAHP 308


>gi|220683968|gb|ACL80790.1| IntIA [Vibrio tasmaniensis]
          Length = 324

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 87/178 (48%), Gaps = 38/178 (21%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI-------LEY 213
           L+YG GLR+ E L L  Q+I  D  ++R+ QGKG K RIV + P +  AI        EY
Sbjct: 129 LMYGSGLRLMECLRLRMQDIDYDYKSVRVWQGKGGKNRIVTIAPELFPAIKLQQQKSAEY 188

Query: 214 YDLCPFDLNLN-IQLP------------------LFRGIRGKP-----------LNPGVF 243
           +     D   + + LP                  LF   R  P           ++P   
Sbjct: 189 HQQDIHDEAFSGVYLPDSLAKKYPSAERSLNWQFLFPSARLAPDLRTGVLRRHHIHPTAL 248

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           Q++I+   +   +    + HTLRHSFATHLL +G D+R++Q  LGH  L TTQIYT++
Sbjct: 249 QKHIKVASQKADIEKDISCHTLRHSFATHLLQSGADIRTVQEQLGHADLKTTQIYTHI 306


>gi|91224344|ref|ZP_01259606.1| site-specific recombinase IntIA [Vibrio alginolyticus 12G01]
 gi|91190686|gb|EAS76953.1| site-specific recombinase IntIA [Vibrio alginolyticus 12G01]
          Length = 308

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 88/195 (45%), Gaps = 41/195 (21%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL-------- 202
           ID R    + LLYG GLR+ E L L  Q+I  D   +R+ QGKG K R V L        
Sbjct: 106 IDPRYRLHIQLLYGSGLRVMECLRLRVQDIDYDYGAVRVWQGKGGKNRTVTLAKELHEPL 165

Query: 203 ----------------LPS-----VRKAILEYYDLCPFDLNLNIQLPLFR--------GI 233
                           +P      + + +   Y     D N +   P  +         +
Sbjct: 166 KAQVNLARNYYFKDRHMPGYAGVYISEGLRRKYPKAELDFNWHFLFPSTKLSADRDTGEL 225

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N    QR +++      +  + T HTLRHSFATHLL +G D+R++Q  LGH  + 
Sbjct: 226 RRHHINESAIQRAVKRAASDASIEKTVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVK 285

Query: 294 TTQIYT---NVNSKN 305
           TTQIYT   +VN KN
Sbjct: 286 TTQIYTAAHHVNHKN 300


>gi|256854437|ref|ZP_05559801.1| predicted protein [Enterococcus faecalis T8]
 gi|256709997|gb|EEU25041.1| predicted protein [Enterococcus faecalis T8]
 gi|315029064|gb|EFT40996.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4000]
          Length = 302

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 131/262 (50%), Gaps = 18/262 (6%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RG SK+T+++Y+   R    F      + I ++   Q+   +I+++I   + +++   ++
Sbjct: 37  RGFSKITIKNYKSKLRNTANFF-----KSINVEP-SQIEKKQIKSWIIDMQEKEMQASTI 90

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE---KQALTLVDNVLLHT 145
             S+S +K    Y+   K    +  +++  LK+   +   LN+   KQ LT+        
Sbjct: 91  NVSVSRLKKLFDYMLIEKYIDYNPFVDIERLKEQRKVIYPLNDYEIKQMLTVA------K 144

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
            H  K I  RN  IL L+  CGLRISE   +  ++IM++Q  +R + K +K R V + P 
Sbjct: 145 KHPYKHIAQRNVVILMLMIECGLRISEVCEIRDEDIMNNQIIIR-KSKNNKDRAVAVSPI 203

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAH 263
           ++K I++Y  +      L    P      GK LN     + ++++++ + +   +  + H
Sbjct: 204 LKKEIIKYQRIKKRKFGLLEGNPFIVSNLGKKLNEKSIWQIMQEIKKQIDIRDCVRFSGH 263

Query: 264 TLRHSFATHLLSNGGDLRSIQS 285
           TLRH++A+  L NG D+ ++ S
Sbjct: 264 TLRHTYASMQLRNGLDIYTLSS 285


>gi|258543858|ref|ZP_05704092.1| tyrosine recombinase XerC [Cardiobacterium hominis ATCC 15826]
 gi|258520898|gb|EEV89757.1| tyrosine recombinase XerC [Cardiobacterium hominis ATCC 15826]
          Length = 301

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 149/311 (47%), Gaps = 27/311 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR- 78
           + L  L  ERG +  TL +Y    R+ L   A    E    + +  L   +++ +++K  
Sbjct: 6   DHLAYLRYERGKAAQTLATY----RRLLYQFA----EAHRDRDLHALEPRDLQNYLTKTL 57

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              K    +L +  + ++S+ ++L + R + T+         +    LP AL  +Q  TL
Sbjct: 58  GGGKYSPATLNQHRAALRSYYRWLHRLRGLPTDPAAALKLPRQARQPLPDALTPEQITTL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++      +     I  R+  IL L Y  GLR++E  SL  +++  D     I+GKG   
Sbjct: 118 LEAP---ATDNPNLI--RDHTILELFYSAGLRLAELASLDNRDLGPDSEHHIIRGKGGVE 172

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLG- 255
           R++ +    R+A+  +  +    L    +  LF    G  L   G+  R    L+ Y   
Sbjct: 173 RLIFIGSKAREALARWQTVRGQLLKKADEPALFLNKNGGRLTERGIALR----LKAYAAE 228

Query: 256 -LP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            LP ++   H LRH+FA+H+L + GDLRS+Q +LGH  L+TTQIYT+++ ++    +   
Sbjct: 229 RLPGVNVHPHMLRHTFASHILQSSGDLRSVQELLGHKNLATTQIYTHLDYQH----LART 284

Query: 314 YDQTHPSITQK 324
           YD+ HP   +K
Sbjct: 285 YDEKHPRAKKK 295


>gi|229546531|ref|ZP_04435256.1| integrase/recombinase [Enterococcus faecalis TX1322]
 gi|307277324|ref|ZP_07558423.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|307296545|ref|ZP_07576367.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|229308343|gb|EEN74330.1| integrase/recombinase [Enterococcus faecalis TX1322]
 gi|306496018|gb|EFM65604.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|306505991|gb|EFM75162.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|315157760|gb|EFU01777.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0312]
          Length = 302

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 131/262 (50%), Gaps = 18/262 (6%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RG SK+T+++Y+   R    F      + I ++   Q+   +I+++I   + +++   ++
Sbjct: 37  RGFSKITIKNYKSKLRNTANFF-----KSINVEP-SQIEKKQIKSWIIDMQEKEMQASTI 90

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE---KQALTLVDNVLLHT 145
             S+S +K    Y+   K    +  +++  LK+   +   LN+   KQ LT+        
Sbjct: 91  NVSVSRLKKLFDYMLIEKYIDYNPFVDIERLKEQRKVIYPLNDYEIKQMLTVA------K 144

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
            H  K I  RN  IL L+  CGLRISE   +  ++IM++Q  +R + K +K R V + P 
Sbjct: 145 KHPYKHIAQRNVVILMLMIECGLRISEVCEIRDEDIMNNQIIIR-KSKNNKDRAVAVSPI 203

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAH 263
           ++K I++Y  +      L    P      GK LN     + ++++++ + +   +  + H
Sbjct: 204 LKKEIIKYQRIKKRKFGLLEGNPFIVSNLGKKLNEKSIWQIMQEIKKQIDIRDCVRFSGH 263

Query: 264 TLRHSFATHLLSNGGDLRSIQS 285
           TLRH++A+  L NG D+ ++ S
Sbjct: 264 TLRHTYASMQLRNGLDIYTLSS 285


>gi|294776403|ref|ZP_06741881.1| phage integrase, N-terminal SAM domain protein [Bacteroides
           vulgatus PC510]
 gi|294449729|gb|EFG18251.1| phage integrase, N-terminal SAM domain protein [Bacteroides
           vulgatus PC510]
          Length = 341

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 153/321 (47%), Gaps = 36/321 (11%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFL---AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L IE G+S+ T+ +Y       + FL    F   +++T+  I +        ++ + R  
Sbjct: 18  LPIECGVSQNTILTYSYTFSLLIEFLKEQEFINPQRVTLADITKERIINFLQWLEEDRHC 77

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITT---ESNILNMRNLKKSNSLPRALNEKQALTLV 138
            +  R+ +  L+ I+SF  YL+ R +        I+++R  KK  + P     + A   +
Sbjct: 78  SVSTRNAR--LAAIRSFYSYLQYRDVKGMFRYHEIMSIR--KKKTAAP-----EMAYLTI 128

Query: 139 DNVLLHTSH---ETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKG 194
           D + L  S    +T++   R+  +L LLY  G R+ E + LTP NI  +D +T+++ GKG
Sbjct: 129 DGIKLILSQPDLKTRY-GRRDFVLLSLLYDSGARVQELIDLTPPNIEFNDTATVKLCGKG 187

Query: 195 DKIRIVPLLPSVRKAILEY-YD--LCPFDLNLNIQLPLFRGIRGKPLNP----GVFQRYI 247
           +K RIVPL       + +Y YD  L   D +    +P+F    G+ L+      + ++Y 
Sbjct: 188 NKARIVPLSKQQASNLKKYMYDEGLMKEDRHC---VPIFCNFHGEKLSRVAVLNIVKKYA 244

Query: 248 RQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
              R+     +P +   H+ RHS A HLL    +L  I+  LGH   +TT+IY   + K 
Sbjct: 245 EIARKKSPDLIPENLGCHSFRHSKAMHLLEADINLVYIRDFLGHVSTTTTEIYARASEKK 304

Query: 306 GGDWMMEIYDQTHPSITQKDK 326
                +E   + +P I ++ K
Sbjct: 305 K----LEALSRVNPGIIKEGK 321


>gi|312794237|ref|YP_004027160.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312181377|gb|ADQ41547.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 290

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 137/294 (46%), Gaps = 33/294 (11%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL+E + WL+ ++     ++ T+ +Y  D   FL +    T E+       +   T+ ++
Sbjct: 3   LLEEFEQWLRAID----HTQKTVINYVKDIELFLKWYEQTTGEEFRPSAYNEFVLTQYKS 58

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNE 131
           ++     QK+   S+ R +  ++ F  +L  +     +   N++ +K  + N  P AL++
Sbjct: 59  YMLT--VQKLKPSSVNRKIQALRKFGCFLVAKGYLQTNPAENLKQVKDVRDNLAPAALSK 116

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLR 189
           +    L   V ++          R+ AI+ L    GLR+SE  +L  ++I   + +  LR
Sbjct: 117 QDVFRLRKTVYMYGK-------IRDIAIIELFLNTGLRLSELANLKIEDIEIGERKGKLR 169

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           + GKG K R +PL   +RK + +Y +      C F         LF    GKPL P    
Sbjct: 170 VLGKGRKYREIPLNSEIRKILSQYLEKRKHIDCDF---------LFTTSTGKPLQPNSIY 220

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           R +++     G+ L    H LRH+FA  L+  G ++  ++ +LGH +L TT  Y
Sbjct: 221 RLVKRYAERAGIELH--PHMLRHTFAQTLIDKGTNVFDVKYLLGHEKLETTMRY 272


>gi|298251414|ref|ZP_06975217.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297546006|gb|EFH79874.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 350

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 137/298 (45%), Gaps = 45/298 (15%)

Query: 49  FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKI 107
           F A++ +       + Q+   ++RA+ + R+ ++     ++ R LS ++    +  ++++
Sbjct: 33  FCAWWEQMHQRPFDLTQVVERDLRAWKTVRQQEEGAAPATINRGLSTLRRLCTWAVEQQL 92

Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW-IDARNSAILYLLYGC 166
            TE+ + ++ ++  +   PR+L +      VD +L  T  E    +  R+ A+L LL   
Sbjct: 93  LTENPVKDVADIPSTPVSPRSLPD----LAVDALLRATRAEPDLRLRLRDEALLALLVYA 148

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD--LCPFDL-- 221
           G+RI EA  L  +++     TL ++ GKG K R +P+    ++A+  Y     CP  L  
Sbjct: 149 GVRIQEACDLQLRDLDLASGTLVVRSGKGGKARRLPVHSEAQRALSRYLQEVRCPEGLPP 208

Query: 222 --NLNIQLPLF----RGIRGKPLNPGVFQRYIRQLRRYLG-------------------- 255
             +   + PL     R + G+PL PG+  R  RQ    LG                    
Sbjct: 209 IGSEQERTPLLVGMQRAVAGRPLAPGIKTRVARQRIAQLGKVAATQLEEAATRERDLARA 268

Query: 256 -------LPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
                  L L T A H LRHSFA  +L  G  L  +Q +LGH RLSTT IY   + ++
Sbjct: 269 EQLRACVLQLETAAPHQLRHSFARRMLKTGAQLPEVQRMLGHSRLSTTGIYLTPSEED 326


>gi|317051491|ref|YP_004112607.1| integrase family protein [Desulfurispirillum indicum S5]
 gi|316946575|gb|ADU66051.1| integrase family protein [Desulfurispirillum indicum S5]
          Length = 330

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 147/286 (51%), Gaps = 21/286 (7%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L+ E GLS+ T+  Y  + R+FL FL    +E++T++T       E+R +++ +   K  
Sbjct: 50  LKYECGLSQQTIDRYLFEMRRFLEFL---QQEELTVETA---GPRELRMYLTHKAMGK-S 102

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS--NSLPRAL--NEKQALTLVDN 140
             +    L  +++   +L+      E+   ++++ K +  N +P  L  +E++ L    N
Sbjct: 103 KSTYANVLCYVRAIFNWLQYEGFLEENPARDLKSPKGAYKNEMPVFLKDDEQKRLRAYLN 162

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            L     E  + + R++A++  +   G+R SE   LT +N        +I  KG K +I+
Sbjct: 163 GL-----ERNFHNDRDTAVMLCVLYTGMRASEICQLTRRNFHRQGKAFQITRKGQKEQIL 217

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV-FQRYIRQLRRY-LGLPL 258
           P+  ++ + IL++Y     D +++     F    GKPL P + +QR    ++   + LP 
Sbjct: 218 PIADALME-ILQFYWYEHMD-SIDSDF-FFCRTNGKPLTPYIIWQRTSLHIKAAGIDLPR 274

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              AH LRH+FAT+L+  G +L  IQ +LGH  ++ T+IYT+ + +
Sbjct: 275 KRGAHLLRHTFATNLVRKGVNLIEIQRLLGHSHVAVTEIYTHTSPE 320


>gi|186471361|ref|YP_001862679.1| integrase family protein [Burkholderia phymatum STM815]
 gi|186474500|ref|YP_001863471.1| integrase family protein [Burkholderia phymatum STM815]
 gi|186474622|ref|YP_001863593.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184197670|gb|ACC75633.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198459|gb|ACC76421.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198581|gb|ACC76543.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 292

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 131/291 (45%), Gaps = 33/291 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF-IS 76
           RQ  L +++I R L++ T +SY      F        E          L   EIRA+ I 
Sbjct: 5   RQRMLHDMQI-RNLAENTQKSYLIQVSSFARHFRRSPE---------LLGPEEIRAWLIY 54

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            R  +K+   SL  ++  ++   +   KR  + E   L     +K   LP  L+ ++  T
Sbjct: 55  LREERKLAPASLSPAIGALRFLYRVTLKRDWSDEDFPLP----RKPVRLPVVLSLEEITT 110

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195
             D++             ++  IL + Y  GLR+SE + L   +I   +  +R+ QGK  
Sbjct: 111 FFDSI----------PSLKHRTILMVAYAAGLRVSEVVHLKVTDIDSKRMVIRVNQGKNR 160

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYL 254
           K R V L P + + +  Y+       + + +  LF G I G P+  G   R     R+  
Sbjct: 161 KDRYVMLSPRLLEILRTYWQ------DAHPRGWLFPGDIPGHPITRGAVSRICALARQRC 214

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           G+    T H+LRH+FATHLL  G D+R IQ ++GH  L+TT  Y  + +  
Sbjct: 215 GIRKPITPHSLRHAFATHLLEAGTDVRRIQLLMGHRSLATTSRYLRIATST 265


>gi|212695142|ref|ZP_03303270.1| hypothetical protein BACDOR_04680 [Bacteroides dorei DSM 17855]
 gi|212662319|gb|EEB22893.1| hypothetical protein BACDOR_04680 [Bacteroides dorei DSM 17855]
          Length = 353

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 141/311 (45%), Gaps = 57/311 (18%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK---ITIQTIRQLSYTEIRAFISKRRTQ 81
           L  ERGLS  T++SY+     F++F+ F  E+K   +    I+ ++   I AF+   +++
Sbjct: 34  LPCERGLSTNTIESYKT---TFILFITFMEEKKNIAVNKLAIKNITKENIIAFLEWLQSE 90

Query: 82  KIGDRSLKR-SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT---- 136
           +    + +   L+ + SF +YL+                     +P  LNE Q +     
Sbjct: 91  RHCSTATRNVRLAALHSFFRYLQYE-------------------MPENLNEWQQILSIKA 131

Query: 137 -----------LVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-M 182
                       VD +  LL    ++     R+ A+L L+Y C  R+ E + LTP  I +
Sbjct: 132 KKNIKKNVNYLTVDGIQLLLQQPDQSTKKGRRDLAMLSLMYDCAARVQEIIDLTPAMIRL 191

Query: 183 DDQSTLRIQGKGDKIRIVPLLPS----VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
               T+++ GKG+K RIVPL+      +++ ++E   L     N +   PLF   R +  
Sbjct: 192 TKPYTIKVIGKGNKPRIVPLMEKQVIHLKRYLVEN-KLLESHANFS---PLFSNSRNEKF 247

Query: 239 N----PGVFQRYIRQLR-RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
                  + Q Y    R +   L    + H+LRHS A HLL  G +L  I+ ILGH  + 
Sbjct: 248 TRQGIANILQTYANAARVKDSTLIPKLSPHSLRHSKAMHLLQAGVNLVYIRDILGHESVL 307

Query: 294 TTQIYTNVNSK 304
           TT+IY   +SK
Sbjct: 308 TTEIYARTDSK 318


>gi|254510200|ref|ZP_05122267.1| phage integrase [Rhodobacteraceae bacterium KLH11]
 gi|221533911|gb|EEE36899.1| phage integrase [Rhodobacteraceae bacterium KLH11]
          Length = 295

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/149 (39%), Positives = 80/149 (53%), Gaps = 8/149 (5%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL 216
           A L + YG GLR SE  +LT  +I  D+  + + QGKG K R V L P +   + +Y+  
Sbjct: 128 AALSISYGAGLRASEVCNLTTGDIDSDRMLIHVVQGKGRKDRKVMLSPDLLDLLRDYW-- 185

Query: 217 CPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
           C        +  LF G  +  P++P    R     +R  G+    T HTLRHSFATHLL 
Sbjct: 186 C----EARPEGWLFPGKPKINPISPRQLNRAFTSAKRMAGINKPATLHTLRHSFATHLLE 241

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            G D+R IQ +LGH +L+ T  YT V +K
Sbjct: 242 AGTDVRVIQVLLGHAKLTITAQYTKVATK 270


>gi|188587679|ref|YP_001921083.1| site-specific tyrosine recombinase XerC [Clostridium botulinum E3
           str. Alaska E43]
 gi|188497960|gb|ACD51096.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 329

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 150/309 (48%), Gaps = 38/309 (12%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY----TEEKIT-------------IQT 62
           ++L  LE  +  S  T+ +Y+ D   F  F+  Y     ++KI              +++
Sbjct: 19  DFLNYLETIKNKSSNTIAAYKKDLTIFFRFMKLYRGIVKDKKIEFEDIDITDIDDEFLKS 78

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTESNILNMRNLKK 121
           I+        +FI K R      R+  R ++ +KS+ K+L+ K KI  ++    + + K 
Sbjct: 79  IQLRDLYAFMSFIEKYRNNSTYARA--RKVATLKSYFKFLQGKAKIIVDNPTTELESPKI 136

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           +   P  L   Q++ L+ ++  +  +      AR+  IL L   CG+R+SE   ++ + I
Sbjct: 137 NKRQPVYLTLDQSIHLLSSLDKNNKNY-----ARDYCILTLFLNCGMRLSELCGISIEKI 191

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGK 236
            +D   L I GKG+K R V L  +  K+I  Y  +     + +  LP     LF     K
Sbjct: 192 RND--ILAIIGKGNKERTVYLNEACLKSIENYMRI----RDDSKALPEYKKFLFLSSHNK 245

Query: 237 PLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLST 294
           P+N    +  I++  +  GL  +  T H LRH+ AT +   G  D+RS+Q+ILGH  +ST
Sbjct: 246 PINQRTVEIMIKKHVKNAGLTDAKYTPHKLRHTAATLMYKYGDVDIRSLQNILGHENIST 305

Query: 295 TQIYTNVNS 303
           TQIYT+V++
Sbjct: 306 TQIYTHVDN 314


>gi|327537283|gb|EGF24020.1| phage integrase family protein [Rhodopirellula baltica WH47]
          Length = 286

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 127/292 (43%), Gaps = 30/292 (10%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G +K T   Y    RQ   F A  + E++T Q +RQ        F+  +  +     SL+
Sbjct: 5   GKAKRTHDGYIRAVRQLSDF-AGCSPEQVTEQHVRQF-------FLHLKNDRNFAYGSLR 56

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
            + SGIK F  +  KR    +  I+ M  L+   +LP  L  +Q   L+ +         
Sbjct: 57  VAFSGIKFFFTHTCKR----DWEIIKMLKLQNITTLPEVLTIEQVHELIGSA-------- 104

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRK 208
                R     + +Y  GLR++EAL L   +I  ++  + +  GKG K R VPL  +  +
Sbjct: 105 --TTQRMFVYFWTVYSLGLRLNEALHLQVSDIDAERGWVHVHRGKGAKDRYVPLPTTTVR 162

Query: 209 AILEYYD-------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            +  Y+        L P D   +            P++    Q  ++Q+ + L      +
Sbjct: 163 LLRNYWASHRHPCLLFPADGRKHDLAKDGVSQATTPMSETAVQGAMKQITKNLRFGKKVS 222

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            HTLRHS+ATHLL +G  L+ IQ  LGH  L TT +Y ++      +   EI
Sbjct: 223 IHTLRHSYATHLLESGVGLKVIQRYLGHSSLQTTLVYLHLTDTAEANAREEI 274


>gi|300872277|gb|ADK38966.1| IntI4 [Vibrio sp. V48(2010)]
          Length = 293

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 91/188 (48%), Gaps = 38/188 (20%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206
           +D ++   + LLYG GLR+ E + L  Q+I  D   + I QGKG K R V     L P +
Sbjct: 95  VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYIAISIWQGKGGKNRTVTLAKELYPHL 154

Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233
           ++ I     YYD                        P++   +   P F+         +
Sbjct: 155 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 214

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N  V Q+ +R+  +  G+  + T +TLRHSFATHLL  G D+R++Q  LGH  + 
Sbjct: 215 RRHHMNETVLQKAVRRSAQEAGIEKTVTCNTLRHSFATHLLEVGADIRTVQEQLGHTDVK 274

Query: 294 TTQIYTNV 301
           TTQIYT+V
Sbjct: 275 TTQIYTHV 282


>gi|256752061|ref|ZP_05492929.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus CCSD1]
 gi|289578310|ref|YP_003476937.1| tyrosine recombinase XerD [Thermoanaerobacter italicus Ab9]
 gi|256749071|gb|EEU62107.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus CCSD1]
 gi|289528023|gb|ADD02375.1| tyrosine recombinase XerD [Thermoanaerobacter italicus Ab9]
          Length = 290

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 138/290 (47%), Gaps = 29/290 (10%)

Query: 35  TLQSYECDTRQFLIFLA-----FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           TL+SY  D +QFL +L      +Y  +K TI  +  L Y +      K ++Q     ++ 
Sbjct: 23  TLESYNRDIKQFLNYLEEIGINYYNVKKSTI--LNYLYYLK-----KKGKSQA----TVS 71

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R++S +K+F  YL  +K   E     +   K     P AL  +Q      ++LL      
Sbjct: 72  RNVSSLKAFYHYLFMKKKIEEDPTYMINTPKVEKKPPTALTVEQV-----DMLLSIDFGN 126

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
                R+ A++ LLY  GL++SE +SL  +++      + I  + +K R++P+     +A
Sbjct: 127 DEKGLRDKALIELLYATGLKVSEVISLKLEDVNLSYGYVVI--RSNKERVIPIGSHAIEA 184

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +  Y +        N +  LF  +RG+ L      + IR+    +      T +TLR SF
Sbjct: 185 LKNYIEKG--RKAKNGENTLFLNLRGEKLTRQGCWKIIREYTDKINPGFPVTPNTLRQSF 242

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           A H+L NG D+R++Q +LG+     T + TN+ S      + E+Y++ HP
Sbjct: 243 AQHMLQNGADIRAVQEMLGY----QTDLNTNLLSLISKSKIKEVYNKFHP 288


>gi|78223999|ref|YP_385746.1| integron integrase [Geobacter metallireducens GS-15]
 gi|78195254|gb|ABB33021.1| Integron integrase [Geobacter metallireducens GS-15]
          Length = 449

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 136/318 (42%), Gaps = 75/318 (23%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-LSYTEIRAFISKRRTQKIGDRS 87
           R  S+ TL++Y   +R+F  FL     ++++   +++ L+Y  ++          +   +
Sbjct: 147 RHYSRKTLKTYALWSRKFQRFLKNKPPQELSTADVKEYLTYLAVKC--------NVAAST 198

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++ + +    ++  KR+      + ++   KKS  +P  L+ ++    +D +L H SH
Sbjct: 199 QNQAFNSLLFLFRHGLKREF---GELRDVPRAKKSLYVPVVLSREE----IDAILKHLSH 251

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL----L 203
                    S ++ LL+GCGLR+ E L L  ++   D   L + GKG K R VPL    L
Sbjct: 252 PF-------SLVVNLLFGCGLRLFECLQLRVRDFNFDAVVLTVHGKGKKDRTVPLPEAIL 304

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR--------------- 248
           P +   I     L   DL          G  G  L+  V ++Y                 
Sbjct: 305 PELTAQIERVKALHEKDLAA--------GYAGVFLDDAVEKKYPHAPKELIHQWFFPQQS 356

Query: 249 --------QLRRY-----------------LGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                   +LRRY                   +P   TAHT RHS+ATHLL    D+R+I
Sbjct: 357 LTLVEETGELRRYHLHESLLQEALYVAVRRAKIPKRVTAHTFRHSYATHLLQANYDIRTI 416

Query: 284 QSILGHFRLSTTQIYTNV 301
           Q+ LGH  L TT IYT+ 
Sbjct: 417 QTKLGHASLKTTMIYTHC 434


>gi|325297633|ref|YP_004257550.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317186|gb|ADY35077.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 368

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 82/152 (53%), Gaps = 7/152 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           ++  ++ L+Y  GLR SE L+LTP++I  +  ++RI GKG K R   L P + + +  Y+
Sbjct: 209 KHHCMISLVYSAGLRRSELLNLTPKDINSEMMSVRIMGKGKKCRYSLLSPKLLEELRRYF 268

Query: 215 -DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            +  P       + P      G+P +     + +++  +  G+      HT RHSFATHL
Sbjct: 269 REYRPKKWLFEGETP------GQPYSASALVKVLKEAAQRAGIKHRVHVHTARHSFATHL 322

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           L  G DL +IQ +LGH  + TT IY + ++ +
Sbjct: 323 LEQGTDLHTIQELLGHNDIKTTAIYLHTSNAH 354


>gi|297544590|ref|YP_003676892.1| tyrosine recombinase XerD [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842365|gb|ADH60881.1| tyrosine recombinase XerD [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 290

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 138/290 (47%), Gaps = 29/290 (10%)

Query: 35  TLQSYECDTRQFLIFLA-----FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           TL+SY  D +QFL +L      +Y  +K TI  +  L Y +      K ++Q     ++ 
Sbjct: 23  TLESYNRDIKQFLNYLEEIGINYYNVKKSTI--LNYLYYLK-----KKGKSQA----TVS 71

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R++S +K+F  YL  +K   E     +   K     P AL  +Q      ++LL      
Sbjct: 72  RNVSSLKAFYHYLFMKKKIEEDPTYMINTPKVEKKPPTALTVEQV-----DMLLSIDFGN 126

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
                R+ A++ LLY  GL++SE +SL  +++      + I  + +K R++P+     +A
Sbjct: 127 DEKGLRDKALIELLYATGLKVSEVISLKLEDVNLSYGYVVI--RSNKERVIPIGSHAIEA 184

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +  Y +        N +  LF  +RG+ L      + IR+    +      T +TLR SF
Sbjct: 185 LKNYIEKG--RKAKNGENTLFLNLRGEKLTRQGCWKIIREYTDKINPGFPVTPNTLRQSF 242

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           A H+L NG D+R++Q +LG+     T + TN+ S      + E+Y++ HP
Sbjct: 243 AQHMLQNGADIRAVQEMLGY----QTNLNTNLLSLISKSKIKEVYNKFHP 288


>gi|251780259|ref|ZP_04823179.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243084574|gb|EES50464.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 329

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 151/309 (48%), Gaps = 38/309 (12%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY----TEEKITIQTI----------RQ 65
           ++L  LE  +  S  T+ +Y+ D   F  F+  Y     ++KI  + I          + 
Sbjct: 19  DFLNYLETIKNKSSNTIAAYKKDLTIFFRFMKLYRGIVKDKKIEFEDIDITDINDEFLKS 78

Query: 66  LSYTEIRAFIS---KRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTESNILNMRNLKK 121
           +   ++ AF+S   K R      R+  R ++ +KS+ K+L+ K KI  ++    + + K 
Sbjct: 79  IKLRDLYAFMSFIEKYRNNSAYARA--RKVATLKSYFKFLQGKAKIIVDNPTTELESPKI 136

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           +   P  L   Q++ L+ ++  +  +      AR+  IL L   CG+R+SE   ++ + I
Sbjct: 137 NKRQPVYLTLDQSIHLLSSLDKNNKNY-----ARDYCILTLFLNCGMRLSELCGISIEKI 191

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGK 236
            +D   L I GKG+K R V L  +  K+I  Y  +     + +  LP     LF     K
Sbjct: 192 RND--ILVIIGKGNKERTVYLNEACLKSIENYMRI----RDDSKALPEYKKFLFLSSHNK 245

Query: 237 PLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLST 294
           P+N    +  I++  +  GL     T H LRH+ AT +   G  D+RS+Q+ILGH  +ST
Sbjct: 246 PINQRTVEIMIKKHIKNAGLTDGKYTPHKLRHTAATLMYKYGDVDIRSLQNILGHENIST 305

Query: 295 TQIYTNVNS 303
           TQIYT+V++
Sbjct: 306 TQIYTHVDN 314


>gi|75909304|ref|YP_323600.1| tyrosine recombinase XerD subunit [Anabaena variabilis ATCC 29413]
 gi|75703029|gb|ABA22705.1| tyrosine recombinase XerD subunit [Anabaena variabilis ATCC 29413]
          Length = 311

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 132/295 (44%), Gaps = 33/295 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GLS+ T + Y  D RQF  F        + +  IR +S     A+ ++   Q     + +
Sbjct: 39  GLSRTTREQYSRDMRQFRAF--------VKLDDIRIISPMTFIAY-AQHLEQTYAVATTR 89

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEKQALTLVDNVLLHTSHE 148
           R L+ + SF  +  +      + +  +R  K S +L  ++L ++Q   ++D         
Sbjct: 90  RKLASLSSFCSFAVRLGFLAANPMAAVRKPKASTTLAGKSLTQQQVFRMLD--------- 140

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD---DQSTLRIQGKGDKIRIVPLLPS 205
            +  D RN  +L +LY  GLR+SEA+ L   +  +    ++T+ + GKG K R + +  S
Sbjct: 141 -RTDDHRNRCLLKVLYSLGLRVSEAVGLRWSDFTEVNPTKTTVSVLGKGGKYRTLVVPQS 199

Query: 206 VRKAILEYYDL-------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           V    LE  +L          D          R   GK L+     + ++     +GLP 
Sbjct: 200 V---WLELTELRTNQQHNGQNDYVFQSYSNRHRKQSGKQLDRCNASKIVKACAVAVGLPE 256

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           S +AH LRH+ A+H L+NG  ++ ++  LGH  +STT  Y   N  +     + +
Sbjct: 257 SVSAHFLRHACASHSLANGASIQLVKETLGHANISTTNWYLEANPDDCASLYLNV 311


>gi|309378134|emb|CBX23224.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 164

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/148 (35%), Positives = 83/148 (56%), Gaps = 2/148 (1%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A+L L+Y  GLR+SEA+ L   N+  D+  +   GKGDK R+VP+       +  YY
Sbjct: 2   RDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYWVGRYY 61

Query: 215 -DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            +  P  L       LF   +   ++  +    +++     G+    + H+LRH+FATHL
Sbjct: 62  TEARPVLLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIG-HISPHSLRHAFATHL 120

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + +G DLR +Q +LGH  L+TTQIYT++
Sbjct: 121 VQHGLDLRVVQDMLGHADLNTTQIYTHI 148


>gi|121583523|ref|YP_973949.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
 gi|120596773|gb|ABM40207.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
          Length = 331

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 130/316 (41%), Gaps = 39/316 (12%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           PE      +     W  NL+     S  T ++Y+ D R F+ F      E+      R +
Sbjct: 26  PEFARLAEVPPEAQWFANLD-----SAQTRRAYQGDLRAFMAFTGIVQPEEF-----RAV 75

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           +   I A+ ++   Q +   S++R L+ + S   YL +    T + +  ++  K   S  
Sbjct: 76  TRAHILAWRAELEKQNLAGASIRRKLAALASLYDYLCESNAVTHNPVRGVKRPKAETSEG 135

Query: 127 R--ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           +  AL + QA       LL           R+ AIL +L    LR  E   L  ++   +
Sbjct: 136 KTPALGDAQA-----RALLGAPPSDTLKGKRDRAILSVLLYHALRREELTKLLVKDFAQE 190

Query: 185 Q---STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR-------GIR 234
           +     LR+QGKG K+R +P  P   + + EY  L           PLFR       G  
Sbjct: 191 RRGVPHLRVQGKGGKLRYLPAHPHSLRLVAEY--LAASGHGQEADSPLFRRTRAPRAGAL 248

Query: 235 GKPLNPG-----VFQRYIRQLRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILG 288
              L PG     V  RY+ Q+    G+       H LR + AT+ L +  D+  +Q  LG
Sbjct: 249 ASALTPGSVYADVVVRYMAQV----GIAGENMGPHALRATAATNALEHQADIAKVQEWLG 304

Query: 289 HFRLSTTQIYTNVNSK 304
           H  +STT++Y    S+
Sbjct: 305 HASISTTRVYDRRGSR 320


>gi|317481412|ref|ZP_07940479.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902397|gb|EFV24284.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 343

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 147/317 (46%), Gaps = 30/317 (9%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDR 86
           +R +SK T+ SY     QF+ ++       +    ++ L+   +  ++     T+K    
Sbjct: 22  QRNVSKNTIASYRDSFVQFINYMKDINGIPVERLLLKHLTRDNVINYLQWLHNTKKNTSA 81

Query: 87  SLKRSLSGIKSFLKYLKK---RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
           +    L+ I+SF  YL+      +    +IL+++  K   S P  L+ +        +LL
Sbjct: 82  TCNYRLAAIRSFCSYLQYIVIDNMVEWQSILSIKAKKTEISPPNYLSMEGI-----KLLL 136

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVP 201
                T W   R+ A+L L+Y  G R+ E   LT   +  D +  T+R+ GKG K RIVP
Sbjct: 137 AQPDTTSWKGRRHLALLSLMYDTGARVQEIADLTVDCVRIDTTPYTIRLTGKGRKTRIVP 196

Query: 202 LLPSVRKAILEYYDLCPFDLNLN----IQLPLFRGIRGKPLN-PGVFQRYIRQLRRYLG- 255
           L  +    +  Y +    + NLN    ++ PLF   R + L   G+   YI ++   +  
Sbjct: 197 LAEAQVDILRSYME----ENNLNDPNMMKKPLFFNGRHEKLTREGI--TYILKIYADMAN 250

Query: 256 ------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                 +P   + H++RHS A HLL  G +L  I+ ILGH  + TT IY   +SK   + 
Sbjct: 251 KQQPEIIPKKISCHSIRHSKAMHLLQAGVNLVYIRDILGHVSIQTTDIYARADSKAKREA 310

Query: 310 MMEIYDQTHP-SITQKD 325
           +   Y +  P +IT+K+
Sbjct: 311 LENAYTRLTPNTITEKE 327


>gi|182420557|ref|ZP_02643923.2| site-specific recombinase, phage integrase family [Clostridium
           perfringens NCTC 8239]
 gi|182379696|gb|EDT77175.1| site-specific recombinase, phage integrase family [Clostridium
           perfringens NCTC 8239]
          Length = 361

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 148/307 (48%), Gaps = 34/307 (11%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT--EEKITIQTIRQLSYTEIR----- 72
           N+L+N+   +G S  T++ Y  D   F  FL  Y   E  I ++ I ++  +++      
Sbjct: 52  NYLENV---KGKSLNTVKGYSVDLGLFFKFLKVYKGLENNIELEKIEEVEISDLGDNFIK 108

Query: 73  -----------AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLK 120
                      AF+ K R      R+  R ++ +KSF K+L  + K+  E+  + + + K
Sbjct: 109 DITLSDIYAFLAFLEKVRNNSAYARA--RKVATLKSFFKFLNSKIKLIDENPTVELESPK 166

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
            +   P  L   Q++T++++  +   ++  +   R+  IL L   CG+R+SE  ++  + 
Sbjct: 167 INKRHPVYLTLDQSITVLNS--MDKGNKNYY---RDYCILTLFLNCGMRLSELCNIEIEK 221

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLN 239
           I  D  TL I GKG+K R V L  +   AI  Y  +          +  LF   + +P+N
Sbjct: 222 IKGD--TLTIIGKGNKERTVYLNEASIAAIENYLKNRNDSKATEEAKKYLFLSSKYRPIN 279

Query: 240 PGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQI 297
               +  +++     G      T H LRH+ AT +   G  D+RS+Q+ILGH  +STTQI
Sbjct: 280 KRSVEILVKKHIENAGFKDQKYTPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQI 339

Query: 298 YTNVNSK 304
           YT+V+ +
Sbjct: 340 YTHVDDE 346


>gi|37524549|ref|NP_927893.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37525103|ref|NP_928447.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37525111|ref|NP_928455.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36783973|emb|CAE12838.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36784529|emb|CAE13429.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36784537|emb|CAE13437.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 376

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 150/316 (47%), Gaps = 36/316 (11%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFL---AFYTEEKITIQTIRQLSYTEIRAFISKRRT--QK 82
           ER  S+ TL+     T  F+++      Y    IT   + +      R     R+T  + 
Sbjct: 44  ERNWSETTLKVQTHHTYHFILWATDRGLYYAADITRPILERYQ----RYLYQYRKTNGEP 99

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR---ALNE-KQALTLV 138
           +  R+ +  L  ++ + K+L K+ +   +   ++   ++   LPR   +++E +  L+L 
Sbjct: 100 LSIRTQRTQLQPLQVWFKWLTKQNLILANPAADIELPREEKRLPRYILSIDEIEHILSLP 159

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197
           D   L          AR+ A++ LL+  G+R SEA  L   +I   + T+ I QGKG+K 
Sbjct: 160 DPNTLQG--------ARDRALMELLWSTGIRRSEAARLDIYSIDGSRKTVTIRQGKGNKD 211

Query: 198 RIVPLLPSVRKAI--LEYYD--LCP-FDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLR 251
           R++PL     +A+  L++Y   + P   +  +IQ  LF  + G   L P      +    
Sbjct: 212 RVLPL---GERALNWLQFYQQQIRPQLLVTPDIQ-SLFVAMDGLDGLQPNGITNAVSGYI 267

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R  G+      H  RH+ AT +L NG DLR IQ++LGH  + +TQ+YT V+ +     + 
Sbjct: 268 RAAGIEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRA----LQ 323

Query: 312 EIYDQTHPSITQKDKK 327
            ++  THP+    D+K
Sbjct: 324 AVHASTHPAEQMADEK 339


>gi|329119991|ref|ZP_08248663.1| tyrosine recombinase XerD [Neisseria bacilliformis ATCC BAA-1200]
 gi|327463904|gb|EGF10218.1| tyrosine recombinase XerD [Neisseria bacilliformis ATCC BAA-1200]
          Length = 290

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 108/245 (44%), Gaps = 31/245 (12%)

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           RS  R+LS  K    +L     T      ++R+ K+  +LP  + E Q   L+      T
Sbjct: 64  RSQARALSACKRLYGWLLDTGQTAADPTEHLRSPKQEKTLPPVIGEAQIDALLAAPDADT 123

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL--- 202
            H       R+ A+L L+Y  GLR+SEA+ L           +   GKG K RIVP+   
Sbjct: 124 PHGL-----RDKALLELMYATGLRVSEAVRLRQDEAKLQAGFVSTIGKGGKQRIVPMGEE 178

Query: 203 --------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
                   L   R  +L+    C        ++ + R +    +        IR L    
Sbjct: 179 AVYWLERYLAQARPQLLKNAR-CDEIFVSQKRVGISRQLAWMIVEKHAAAAGIRHL---- 233

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
                 + H LRH+FATHL+++G DLR +Q +LGH  +STT+IYT V ++     +  I 
Sbjct: 234 ------SPHGLRHAFATHLVNHGADLRVVQELLGHASISTTEIYTRVAAER----LKSIV 283

Query: 315 DQTHP 319
            + HP
Sbjct: 284 IEHHP 288


>gi|319412013|emb|CBY91946.1| hypothetical protein [Streptococcus pneumoniae]
          Length = 298

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 134/291 (46%), Gaps = 32/291 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L   +  + LS  T+++Y+ D  QF                    +Y  + ++I +   
Sbjct: 9   YLDYCKTHKRLSSHTIRAYKNDLMQFY-----------------NSNYDNVESYIEELTQ 51

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNE---KQALT 136
             I   +L+R ++ IK F  YLK + I  ES    +R   +    LP+ +     K   +
Sbjct: 52  SNIKTNTLRRKIACIKVFYNYLKYQHIIEESPFNQLRFQFRTEKILPKTIPYDILKNIFS 111

Query: 137 LVDN-VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            ++  V++  +   K    RN  I+ LL   G+RISE   +  ++I     TL I GKG 
Sbjct: 112 YLEQRVVISKTDYQKQKAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLHIIGKGK 171

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRG-IRGKPLNPGVFQRYIRQLR 251
           K RI+ L       +LE Y      +N N +     LF G    KPL+    +  ++++ 
Sbjct: 172 KERILFLGDQTTFNLLETY------INKNGKESNDFLFPGKYSPKPLSEQSVRLILKKIV 225

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               L  + T H  RHSFAT LL N  D+R IQ ILGH  +S TQIYT+V+
Sbjct: 226 EQNSLSKTITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISITQIYTHVS 276


>gi|257458544|ref|ZP_05623679.1| integron integrase [Treponema vincentii ATCC 35580]
 gi|257443978|gb|EEV19086.1| integron integrase [Treponema vincentii ATCC 35580]
          Length = 426

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 135/284 (47%), Gaps = 51/284 (17%)

Query: 61  QTIRQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           + ++  S  EI  F+S+  T +K+   S  ++L+ +    K +    I +  NI+     
Sbjct: 146 KNLKAFSDAEINPFVSRLATKEKVAASSQNQALAALLFLYKNILGLTIQSPENIIRA--- 202

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           KKS  LP  L+ ++   +  ++L    +            + LLYG G+R+ E+L L  Q
Sbjct: 203 KKSKKLPAVLSREETAKIF-SLLPENDY---------GLFIRLLYGTGMRLMESLRLRVQ 252

Query: 180 NIMDDQSTLRIQ-GKGDKIR--IVPL---------LPSVRKA----ILEYYDLCPFDLNL 223
           +I  D++ + +  GKG K R  ++P+         L +VR+       + + L P    L
Sbjct: 253 DIDFDKNEITVHCGKGAKDRKTMLPVSLKFPLQKHLENVRRIHEADCKDGFGLVPLPSAL 312

Query: 224 NIQLP----------LF----------RGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTA 262
             + P          +F           G +G+  ++P V QR + +     G+P     
Sbjct: 313 AKKYPNAGKTWAWQWVFPQARRWQNKETGEQGRHHIDPSVIQRTLHEAVLRSGIPKPIGC 372

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           HT RHSFATHLL +G D+R+IQ +LGH  +STT +YT+V ++ G
Sbjct: 373 HTFRHSFATHLLESGYDIRTIQELLGHSDVSTTMVYTHVLNRGG 416


>gi|294776304|ref|ZP_06741787.1| integron integrase [Bacteroides vulgatus PC510]
 gi|294449844|gb|EFG18361.1| integron integrase [Bacteroides vulgatus PC510]
          Length = 366

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 81/150 (54%), Gaps = 7/150 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           ++  ++ L+Y  GLR SE L+LTP++I+ ++  + I GKG K R   L   + K + EY+
Sbjct: 207 KHRCMISLIYSAGLRRSELLNLTPKDIISERMLVCIMGKGRKCRYSLLSEKLLKELREYF 266

Query: 215 DLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                      Q  LF G   G+P +     + +++     G+      H LRHSFATHL
Sbjct: 267 K------EYRPQKWLFEGETPGEPYSASALVKVLKEAASRAGIKHRVHVHMLRHSFATHL 320

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           L  G DLR+IQ +LGH  + TT IY +V S
Sbjct: 321 LEQGTDLRTIQELLGHNDIKTTSIYLHVTS 350


>gi|18310145|ref|NP_562079.1| site-specific tyrosine recombinase XerC [Clostridium perfringens
           str. 13]
 gi|18144824|dbj|BAB80869.1| probable integrase/recombinase [Clostridium perfringens str. 13]
          Length = 450

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 148/307 (48%), Gaps = 34/307 (11%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT--EEKITIQTIRQLSYTEIR----- 72
           N+L+N+   +G S  T++ Y  D   F  FL  Y   E  I ++ I ++  +++      
Sbjct: 141 NYLENV---KGKSLNTVKGYSVDLGLFFKFLKVYKGLENNIELEKIEEVEISDLGDNFIK 197

Query: 73  -----------AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLK 120
                      AF+ K R      R+  R ++ +KSF K+L  + K+  E+  + + + K
Sbjct: 198 DITLSDIYAFLAFLEKVRNNSAYARA--RKVATLKSFFKFLNSKIKLIDENPTVELESPK 255

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
            +   P  L   Q++T++++  +   ++  +   R+  IL L   CG+R+SE  ++  + 
Sbjct: 256 INKRHPVYLTLDQSITVLNS--MDKGNKNYY---RDYCILTLFLNCGMRLSELCNIEIEK 310

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLN 239
           I  D  TL I GKG+K R V L  +   AI  Y  +          +  LF   + +P+N
Sbjct: 311 IKGD--TLTIIGKGNKERTVYLNEASIAAIENYLKNRNDSKATEEAKKYLFLSSKYRPIN 368

Query: 240 PGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQI 297
               +  +++     G      T H LRH+ AT +   G  D+RS+Q+ILGH  +STTQI
Sbjct: 369 KRSVEILVKKHIENAGFKDQKYTPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQI 428

Query: 298 YTNVNSK 304
           YT+V+ +
Sbjct: 429 YTHVDDE 435


>gi|325300266|ref|YP_004260183.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324319819|gb|ADY37710.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 368

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 82/152 (53%), Gaps = 7/152 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           ++  ++ L+Y  GLR SE L+LTP++I  +  ++RI GKG K R   L P + + +  Y+
Sbjct: 209 KHHCMISLVYSAGLRRSELLNLTPKDINSEMMSVRIMGKGKKCRYSLLSPKLLEELRRYF 268

Query: 215 -DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            +  P       + P      G+P +     + +++  +  G+      H LRHSFATHL
Sbjct: 269 REYRPKKWLFEGETP------GEPYSASALVKVLKEAAQRAGIKHRVHVHMLRHSFATHL 322

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           L  G DL +IQ +LGH  + TT IY + ++ +
Sbjct: 323 LEQGTDLHTIQELLGHNDIKTTAIYLHTSNAH 354


>gi|149191778|ref|ZP_01870016.1| site-specific recombinase IntI4 [Vibrio shilonii AK1]
 gi|148834358|gb|EDL51357.1| site-specific recombinase IntI4 [Vibrio shilonii AK1]
          Length = 321

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 146/323 (45%), Gaps = 65/323 (20%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N++++    R  S+ T+ +Y     Q+++    Y ++K      +++S  E+  F+S   
Sbjct: 7   NYIRDFMRARHYSERTIDAYLSWIFQYIV----YHDKKHP----KEMSTAEVEDFLSYLI 58

Query: 80  TQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALT 136
           T + +  R+  ++L+ +    K++    I      +NMR  K  KS  LP  L  K+   
Sbjct: 59  TSRNLAMRTQNQALNALVFLYKHILHDPID-----VNMRFKKSNKSKKLPTVLTVKEVSK 113

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195
           +++++L +     +           L YG GLR+ E L L  Q+I  D   LRI + KG+
Sbjct: 114 VLESMLPNFLLPAQ-----------LKYGSGLRLMECLRLRYQDIDFDYGALRIWRAKGN 162

Query: 196 KIRIV----PLLPSVRK-------------------------AILEYYDLCPFDLNLNIQ 226
           K R+V     L P++R+                         A+   Y     +LN    
Sbjct: 163 KNRVVTLARELFPAIRRQQQHVESIWRQDVKQSDYSGVWLPNALATKYPNSNKELNWQFL 222

Query: 227 LPLFRG--------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
            P  R         IR   +N    Q+ ++   +  G+    + HTLRHSFATHLL +G 
Sbjct: 223 FPSARLSIDPTSNLIRRHHINESSVQKALKSAVKKTGIEKRVSCHTLRHSFATHLLESGA 282

Query: 279 DLRSIQSILGHFRLSTTQIYTNV 301
           D+R++Q  LGH  L TTQ+YT+V
Sbjct: 283 DIRTVQEQLGHTDLKTTQVYTHV 305


>gi|37525317|ref|NP_928661.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37527576|ref|NP_930920.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36784744|emb|CAE13652.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36787011|emb|CAE16085.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 376

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 150/316 (47%), Gaps = 36/316 (11%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFL---AFYTEEKITIQTIRQLSYTEIRAFISKRRT--QK 82
           ER  S+ TL+     T  F+++      Y    IT   + +      R     R+T  + 
Sbjct: 44  ERNWSETTLKVQTHHTYHFILWATDRGLYYAADITRPILERYQ----RYLYQYRKTNGEP 99

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR---ALNE-KQALTLV 138
           +  R+ +  L  ++ + K+L K+ +   +   ++   ++   LPR   +++E +  L+L 
Sbjct: 100 LSIRTQRTQLQPLQVWFKWLTKQNLILANPAADIELPREEKRLPRYILSIDEIEHILSLP 159

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197
           D   L          AR+ A++ LL+  G+R SEA  L   +I   + T+ I QGKG+K 
Sbjct: 160 DPNTLQG--------ARDRALMELLWSTGIRRSEAARLDIYSIDGSRKTVTIRQGKGNKD 211

Query: 198 RIVPLLPSVRKAI--LEYYD--LCP-FDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLR 251
           R++PL     +A+  L++Y   + P   +  +IQ  LF  + G   L P      +    
Sbjct: 212 RVLPL---GERALNWLQFYQQQVRPQLLVTPDIQ-SLFVAMDGLDGLQPNGITNAVSGYI 267

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R  G+      H  RH+ AT +L NG DLR IQ++LGH  + +TQ+YT V+ +     + 
Sbjct: 268 RAAGIEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRA----LQ 323

Query: 312 EIYDQTHPSITQKDKK 327
            ++  THP+    D+K
Sbjct: 324 AVHASTHPAEQMADEK 339


>gi|187929889|ref|YP_001900376.1| site-specific tyrosine recombinase XerD [Ralstonia pickettii 12J]
 gi|187726779|gb|ACD27944.1| tyrosine recombinase XerD [Ralstonia pickettii 12J]
          Length = 314

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 148/307 (48%), Gaps = 23/307 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +   L +E GL++ TL +Y  D    L   A +  E+   ++I +    ++  + + R
Sbjct: 23  QRFCDALWLEDGLARNTLDAYRRD----LTLYAHWLAERN--KSIAETEDGDLADYFAAR 76

Query: 79  RTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             +     S  R  +  K F ++ L++  + T+ + L +   K+    P+ L+E Q   L
Sbjct: 77  HAESRAS-SANRRRTVFKRFFQWALREHVVNTDPSRL-LPTAKQPPRFPKTLSETQVEAL 134

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDK 196
           ++   + T      +  R+ A++ L+Y  GLR+SE ++L    + +++     + GKG K
Sbjct: 135 INAPDVDTP-----LGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEGVVRVVGGKGGK 189

Query: 197 IRIVPLLPS----VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
            R+VP        +R+ + +        L       LF   RG+ +    F   I++   
Sbjct: 190 DRLVPFGAEAGDWLRRYLQDRQTGRTALLGERTADALFVTARGEGMTRQAFWYLIKRYAL 249

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  
Sbjct: 250 LADIHAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARER----LRT 305

Query: 313 IYDQTHP 319
           ++ Q HP
Sbjct: 306 LHAQHHP 312


>gi|188589919|ref|YP_001921531.1| tyrosine recombinase XerD [Clostridium botulinum E3 str. Alaska
           E43]
 gi|251778368|ref|ZP_04821288.1| tyrosine recombinase XerD [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|188500200|gb|ACD53336.1| tyrosine recombinase XerD [Clostridium botulinum E3 str. Alaska
           E43]
 gi|243082683|gb|EES48573.1| tyrosine recombinase XerD [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 292

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 139/305 (45%), Gaps = 41/305 (13%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLA-----FYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + G S+ T+ +Y  D   +L FL       Y  +K+T+            A+I       
Sbjct: 14  DSGKSENTIYAYVTDVTLYLKFLDKKGIDIYKSDKLTVM-----------AYIQYLLESG 62

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV- 141
             +RS+ R +  ++SF  YLK + +  E   +  ++ K +  LP+ L        VD V 
Sbjct: 63  KSERSINRIVISLRSFYSYLKSQSLINEVPKIEYKSSKNNRKLPQILT-------VDEVD 115

Query: 142 -LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            ++ T  +      R++A+L L+Y  G+++SE +SL   +I  +   +R     +  R++
Sbjct: 116 KIIRTVEKDCPKGIRDNALLELMYATGMKVSELISLNVDDINLELHFVRCTDSRNFERLI 175

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP------LFRGIRGKPLNPGVFQRYIRQLRRYL 254
           P+  S  KA+ EY       L++  ++       LF  + G  L      R +++  +  
Sbjct: 176 PIGRSACKALNEY-------LSIRYKIAECGVPNLFVNLNGNKLTRQGIWRIVKEYSKRA 228

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            +      +T RHSFA HLL NG ++R++Q +LG+  L+    Y  + +    D +  IY
Sbjct: 229 HIDKDVNLNTFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTYYEIIN---NDKINFIY 285

Query: 315 DQTHP 319
             THP
Sbjct: 286 MNTHP 290


>gi|189425632|ref|YP_001952809.1| integrase [Geobacter lovleyi SZ]
 gi|189421891|gb|ACD96289.1| integron integrase [Geobacter lovleyi SZ]
          Length = 453

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 141/318 (44%), Gaps = 75/318 (23%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRS 87
           R  S+ TL++Y   +R+F  FL          ++ ++L+  +++A+++    T K+   +
Sbjct: 151 RHYSRKTLKTYANWSRKFQYFL--------KNRSPQELTGDDVKAYLTHLAVTCKVASTT 202

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++ + +    ++  KR+      + ++   KKS  +P  L+ ++    +D +L H ++
Sbjct: 203 QNQAFNSLLFLYRHGLKREF---GELRDVPRAKKSLYIPTVLSREE----IDAILAHLAY 255

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL----L 203
                      ++ LL+GCGLR  E L L  ++   D   L I GKG K R VP+    L
Sbjct: 256 PF-------DLVVKLLFGCGLRQFECLQLRVRDFNFDAGKLTIHGKGKKDRTVPIPEAIL 308

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL--------- 254
           P +++ I    +L   DL +        G  G  L+  V ++Y +  + +L         
Sbjct: 309 PELKRQIKLVGELHERDLAV--------GYDGVFLDDSVEKKYPKAPKEFLHQWFFPQKN 360

Query: 255 -------------------------------GLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                                           +P   T+HT RHSFATHLL  G D+R I
Sbjct: 361 LTLAAETGQQRRWHLHESELQEALYPAVRKAKIPKRVTSHTFRHSFATHLLQAGYDIRVI 420

Query: 284 QSILGHFRLSTTQIYTNV 301
           Q++LGH  L TT IYT+ 
Sbjct: 421 QTLLGHSSLKTTMIYTHC 438


>gi|167040193|ref|YP_001663178.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X514]
 gi|300914277|ref|ZP_07131593.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X561]
 gi|307724487|ref|YP_003904238.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X513]
 gi|166854433|gb|ABY92842.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X514]
 gi|300889212|gb|EFK84358.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X561]
 gi|307581548|gb|ADN54947.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X513]
          Length = 290

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 134/285 (47%), Gaps = 19/285 (6%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           TL+SY  D +QFL +L     E   ++    L+Y  +     K ++Q     ++ R+LS 
Sbjct: 23  TLESYNRDIKQFLNYLEEIEFEYYNVKKSTILNY--LYYLKKKGKSQA----TVSRNLSS 76

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +K+F  YL  +K   E     +   K     P  L  +Q      ++LL           
Sbjct: 77  LKAFYHYLFMKKKIEEDPTYMINTPKVEKKPPATLTVEQV-----DMLLSIDFGNDEKGL 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A++ LLY  GL++SE +SL  +++      + I  + +K R++P+     +A+  Y 
Sbjct: 132 RDKALIELLYATGLKVSEVISLKLEDVNLSYGYVVI--RSNKERVIPIGSHAIEALKNYI 189

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           +        N +  LF  +RG+ L      + IR+    +      T +TLR SFA H+L
Sbjct: 190 EKG--RKAKNGENTLFLNLRGEKLTRQGCWKIIREYTDKINPGFPVTPNTLRQSFAQHML 247

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            NG D+R++Q +LG+     T + TN+ S      + E+Y++ HP
Sbjct: 248 QNGADIRAVQEMLGY----QTDLNTNLLSLISKSKIKEVYNKFHP 288


>gi|126668245|ref|ZP_01739205.1| site-specific recombinase, phage integrase family protein
           [Marinobacter sp. ELB17]
 gi|126627271|gb|EAZ97908.1| site-specific recombinase, phage integrase family protein
           [Marinobacter sp. ELB17]
          Length = 283

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 99/205 (48%), Gaps = 43/205 (20%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K+   +P  L  ++   L+  VL          + ++ A+L + YGCGLR+SEA++L  +
Sbjct: 94  KRPQRIPELLTRQEVTRLLAAVL----------NPKHQALLSVTYGCGLRVSEAVALKVK 143

Query: 180 NIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYY------------DLCPFDLNLNIQ 226
           +I  ++  LRI QGKG K R+VPL P V +A+  Y+            DL P D +L+I 
Sbjct: 144 DIDGERHLLRIEQGKGAKDRMVPLAPGVLQALRRYWQIRHPMLWLFSSDLLP-DRHLHIT 202

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
            P               Q+     +   G+      H LRH++ATH L  G  +  +Q +
Sbjct: 203 TP---------------QKVYHTAKTTSGIEKCGGIHALRHAYATHQLERGLPIHELQRL 247

Query: 287 LGHFRLSTTQIYTN----VNSKNGG 307
           LGH  L +TQ Y +    V  +NGG
Sbjct: 248 LGHSDLRSTQRYLHWLPGVTPQNGG 272


>gi|160947529|ref|ZP_02094696.1| hypothetical protein PEPMIC_01463 [Parvimonas micra ATCC 33270]
 gi|158446663|gb|EDP23658.1| hypothetical protein PEPMIC_01463 [Parvimonas micra ATCC 33270]
          Length = 324

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 147/308 (47%), Gaps = 31/308 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE----------EKITIQTIRQ--- 65
            ++L  L   +G S LT++ Y  D ++FL F+    +            ++I +I +   
Sbjct: 12  DDYLNYLLTIKGRSNLTVKEYYYDLKRFLKFIIMRKKLFGYNLNSDINSVSILSINKRDI 71

Query: 66  --LSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNI---LNMRNL 119
             +  +++ A+IS   +      ++  R +S IKS+ KYL         N    L +  L
Sbjct: 72  LDIDISDLHAYISFCDSNYNDSTKTKARKISAIKSWFKYLHNTVELINKNPAEKLELPKL 131

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           +K N +   L+E +    V N +    +E  +   R+  I+ +   CGLRISE   +  +
Sbjct: 132 QKRNPVYLTLSESEK---VINSIKEEKNE--FNRTRDLCIILIFLTCGLRISELTGINIE 186

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           +I DD+  L + GKG+K RIV L  +   AI  Y  L P   N      LF     K ++
Sbjct: 187 SIKDDK--LSVIGKGNKERIVFLNENCIYAIKSYLQLRPCTKN---TTALFLSSHKKRIS 241

Query: 240 PGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQI 297
               Q  +++     GL P   T H LRH+ AT +   G  D+R+IQSILGH  ++TTQI
Sbjct: 242 NRSIQLRLKKYILLAGLDPKIYTPHKLRHTAATLMYKYGDVDIRTIQSILGHTSVATTQI 301

Query: 298 YTNVNSKN 305
           YT+++  +
Sbjct: 302 YTHLDDDD 309


>gi|170745401|ref|YP_001766858.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
 gi|170659002|gb|ACB28056.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
          Length = 305

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 133/287 (46%), Gaps = 21/287 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L++ ++ER LS  TL +Y  D  + +        E + +     ++Y +    +SKR
Sbjct: 8   EAYLRHCQLERHLSSNTLAAYRQDISELIAHFGLI--EVVAVTGDALVTYAD---HLSKR 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTL 137
           R   +   ++KR L   +   ++L +    +          ++  + LPR L   +    
Sbjct: 63  R--GLAPATVKRRLVCARGLFRWLTRTGALSADPFGGTEIRVRIPDRLPRCLATDE---- 116

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               +   +       A       LL+  G+R+ E +S+   +I  D+  +RI GKG++ 
Sbjct: 117 ----MARLARAADDASATTRLATLLLFATGMRVGELVSVRLADIDLDRDVIRIVGKGNRQ 172

Query: 198 RIVPLLP--SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R V ++P  S++ AI EY     +  +        R   G+ L     +  +R+L +  G
Sbjct: 173 RQV-VIPNESLKDAIREYAR--TYHADDRASERFLREPNGRSLTTAAIRTRLRRLAKAAG 229

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           L  + T H LRH+ AT LL  G D+R +Q +LGH  + TTQIYT+V+
Sbjct: 230 LVRTVTPHMLRHTAATELLEAGVDIRFVQRLLGHRSILTTQIYTHVS 276


>gi|89894317|ref|YP_517804.1| hypothetical protein DSY1571 [Desulfitobacterium hafniense Y51]
 gi|219668726|ref|YP_002459161.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
 gi|89333765|dbj|BAE83360.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538986|gb|ACL20725.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
          Length = 327

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 132/287 (45%), Gaps = 17/287 (5%)

Query: 32  SKLTLQSYECDTRQFLIFLAFY------TEEKITIQTIRQLSYTEIRAFISKRRTQ-KIG 84
           S  T ++Y  +   FL F+  Y      +   +TI  ++Q+ +T++ A+++  RTQ K G
Sbjct: 26  SPHTQKAYAQELFLFLKFICDYKPGFPPSPSSLTIGHLQQIQHTDVEAYLNWARTQRKNG 85

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            R+L R  + IKSF +YL +  +  +   + +  + ++   P+AL  +Q   LVD +   
Sbjct: 86  VRALARKQAAIKSFYRYLLREDLILKDITIKLNPISQNQKAPKALEPEQIADLVDIIETG 145

Query: 145 TSHETK------WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           T           + + R+ AI     G GLR+SE   L  Q+I  ++    +  KG+K  
Sbjct: 146 TGLSEGQLKYHLYTEKRDYAIFLTFIGTGLRLSELYGLNLQSIDFNKGCFAVIRKGNKET 205

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ----RYIRQLRRYL 254
            +     V  AI +Y         L     LF  I+G  ++    Q    +Y+  L+ + 
Sbjct: 206 NIYFNTEVATAIQDYIKNERPRYMLQHTEALFLSIQGNRMSKRAIQDLIKKYMAILQNFG 265

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                 +AH LR +FAT LL    +L  +Q  LGH    TT+IY  V
Sbjct: 266 HNTEGYSAHKLRSTFATLLLRETENLAIVQDALGHSDPRTTRIYAKV 312


>gi|83310025|ref|YP_420289.1| integrase [Magnetospirillum magneticum AMB-1]
 gi|82944866|dbj|BAE49730.1| Integrase [Magnetospirillum magneticum AMB-1]
          Length = 285

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/149 (38%), Positives = 75/149 (50%), Gaps = 7/149 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213
           +N   L   Y  GLR+SE ++L   +I   +  +R+ QGKG K R V L   +   +  Y
Sbjct: 121 KNRTALTTAYATGLRVSEVVALKLADIDSGRMVIRVEQGKGRKDRYVMLSAQLLGILRTY 180

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
           + L         +  LF G   KP+ P V     R      G+    T HTLRHSFATHL
Sbjct: 181 WPLA------RPEHWLFPGREDKPIEPTVLNSACRSACVAAGIDKRVTVHTLRHSFATHL 234

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           L  G D+R IQ +LGH  LSTT  YT V+
Sbjct: 235 LEAGTDIRIIQVLLGHNNLSTTARYTQVS 263


>gi|257066445|ref|YP_003152701.1| site-specific tyrosine recombinase XerC [Anaerococcus prevotii DSM
           20548]
 gi|256798325|gb|ACV28980.1| integrase family protein [Anaerococcus prevotii DSM 20548]
          Length = 329

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 95/311 (30%), Positives = 154/311 (49%), Gaps = 33/311 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECD----TRQFLIFLAFYTEEK--------ITIQTI---- 63
           ++L  L+  RGLS  T++ Y+ D     R  +I   +Y +E+        I I  I    
Sbjct: 12  DYLNYLKSIRGLSSNTIKEYQYDLMLMIRYMIIRRIYYGDEESFNDDFKNIKINRIVNPK 71

Query: 64  --RQLSYTEIRAFISKRRTQKIGDRSLKRS--LSGIKSFLKYLKKRKITTESNILN-MRN 118
               L+  +  AF+S    +K  D S  RS  +S IKSF KYL       +SNI + + N
Sbjct: 72  FFESLTLQDFYAFLSFLDNEK-NDSSTTRSRKISAIKSFYKYLFSEIEVIDSNISDKLSN 130

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            K S   P  L   +   L+D +    +   +++  R+ AI++     G+R+SE +S+  
Sbjct: 131 PKISQRQPVYLTLNETELLLDTI---KNEPNEFLRFRDLAIVFTFLTTGMRLSELVSINM 187

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGK 236
           ++I+ D     I GKG+K R V L  + R+ +L+ Y L    +  +L I   LF   R K
Sbjct: 188 EDIIYDH--FNIIGKGNKERTVYLTNNCRE-LLDQYILIRNKYIKDLKID-ALFISTRKK 243

Query: 237 PLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLST 294
            ++    Q  I +  +  G   S  + H LRH+ AT +   G  D+R+++ ILGH  +ST
Sbjct: 244 RISNRAVQSTIDKYLKKAGFDTSVYSTHKLRHTAATLMYKYGNVDIRALKDILGHVNIST 303

Query: 295 TQIYTNVNSKN 305
           TQIYT+++ ++
Sbjct: 304 TQIYTHLDDED 314


>gi|119473240|ref|ZP_01614917.1| putative integrase [Alteromonadales bacterium TW-7]
 gi|119444534|gb|EAW25851.1| putative integrase [Alteromonadales bacterium TW-7]
          Length = 323

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 132/301 (43%), Gaps = 74/301 (24%)

Query: 64  RQLSYTEIRAFIS----------KRRTQKIGDRS---------LKRSLSG-----IKSFL 99
           RQ S   I A++S          KR    +GD           LKR++S        + L
Sbjct: 18  RQYSLRTINAYLSWIANFIHFHNKRHPSSMGDSEVEAFLDHIVLKRNMSAKTQCAALNAL 77

Query: 100 KYLKKRKITTESNI-LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
            +L K  +  E ++ LN    K+   LP  +   +    V  +++H S        R   
Sbjct: 78  AFLYKHIVKNELSLNLNFARSKRQPKLPVVMTPDE----VKQLMVHLS-------KRYYL 126

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSVRKAILEY 213
           I+ L+YG GLR+ EA+ L  ++I  D   ++I  GKG+K RIV     LLP +R  I++ 
Sbjct: 127 IVGLMYGSGLRVMEAVQLRVKDIDFDYKCIQIWNGKGNKHRIVTLATELLPLLRNQIMQV 186

Query: 214 YDLCPFDLN----LNIQLP------------------LFRG-----------IRGKPLNP 240
            +    DL       + +P                  LF             IR    +P
Sbjct: 187 EEYLRLDLQNEQYAGVWMPNALARKYPSANKSLAWQYLFPSYKLSSDPETGEIRRHHFHP 246

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              ++ +++  +   +    T HT RHSFATHLL +G D+R++Q+ LGH  + TTQIYT+
Sbjct: 247 TCVRKAVKKALKQTNITKIVTPHTFRHSFATHLLQSGSDIRTVQAQLGHTDVKTTQIYTH 306

Query: 301 V 301
           V
Sbjct: 307 V 307


>gi|310766358|gb|ADP11308.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 351

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 145/324 (44%), Gaps = 35/324 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF---- 74
           ++WL +L    G S  T+Q Y    R FL +      E   I    Q+S   + A+    
Sbjct: 26  ESWLAHLAAA-GRSARTVQGYGERVRAFLAWC-----ELRGITYAPQVSLAVLEAYQRWL 79

Query: 75  -----ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSLP- 126
                   RR    G R L   LS I+  L++L KR   +   + +L +   K+   LP 
Sbjct: 80  QSYRRADGRRLAVNGQRHL---LSAIRMLLRWLLKRHHILYNPAELLEL--PKEERRLPA 134

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           +  +E++   ++ ++   T         RN AIL LL+  G+R +E   L   ++   + 
Sbjct: 135 QVFSEEETRRVLQSLDAGTP-----PGLRNRAILELLWSTGIRRTELAGLLLSDVDFTRG 189

Query: 187 TLRIQ-GKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
            + ++ GKG K R+VP+  +    +  Y  D+ P          LF   +G  L  G   
Sbjct: 190 VVNVRRGKGGKDRVVPVGHAALMWLARYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLT 249

Query: 245 RYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
               R +R    L  +   H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V  
Sbjct: 250 AMAGRAIREGAHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAI 309

Query: 304 KNGGDWMMEIYDQTHPSITQKDKK 327
            +    + +++  THP+  ++ +K
Sbjct: 310 GH----LQKVHAHTHPAEKRRTEK 329


>gi|134298655|ref|YP_001112151.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134051355|gb|ABO49326.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 293

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 136/286 (47%), Gaps = 34/286 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G ++ T+++Y+ D   F  +    T ++  +  I  +   E + ++     Q +   ++ 
Sbjct: 20  GTARSTVEAYQKDVVYFSKWYIDTTGKEPHLWDITSIDLREYQEYMLS--VQGLMPATIN 77

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNM-RNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           R ++ ++ ++++   +     S +L   + +K+  + P+AL   +   L+     H    
Sbjct: 78  RRMAAMEKYIRWAHGKGYI--SRLLAFPKIIKEQKTPPKALGRVEQNRLLREAERHGK-- 133

Query: 149 TKWIDARNSAILYLLYGCGLRISEALS--LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                AR+ A++ L+  CGLR+ E +S  L+  +I +   T+ + GKG K R VP+ P  
Sbjct: 134 -----ARDIALIRLMMSCGLRVGEVVSIRLSDLDIGERHGTVAVLGKGKKYRKVPVPPEA 188

Query: 207 RKAILE--------YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           RKAI E        Y D      N N+     R +          ++ I+ + ++ GL L
Sbjct: 189 RKAIKEWLAERTQRYPDNDWLFPNRNVGNITARNV----------EQVIKNIGKFAGLDL 238

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
               H LRH+ AT+++  G D+ ++  ILGH  L+TT IYT  +SK
Sbjct: 239 H--PHVLRHTAATNMIRTGADIVTVAQILGHANLNTTAIYTKPDSK 282


>gi|13959816|gb|AAK49012.1| USC7-1p [Myxococcus xanthus]
          Length = 168

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 87/170 (51%), Gaps = 13/170 (7%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +L L+Y  GLR+SE + L    +   Q  LR+ GKG K R+VPL    +  +  Y     
Sbjct: 1   MLELMYAAGLRVSELVLLPATAVNLRQGVLRVTGKGSKERLVPLGEESQHWLERYLQQSR 60

Query: 219 FDLN--------LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSF 269
             L          + Q PLF       L    F   +++  +  G+ P   + H LRHSF
Sbjct: 61  PQLVGKGRVHALADGQTPLFIEPTLHALTRQAFWHLVKRHAQVAGIDPARISPHGLRHSF 120

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           ATHLL+ G DLR++Q +LGH  LSTTQIYT V  ++    + +++ + HP
Sbjct: 121 ATHLLNRGADLRALQMLLGHSSLSTTQIYTLVAREH----LQKLHARHHP 166


>gi|307591252|ref|YP_003900461.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306986817|gb|ADN18692.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 275

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 135/277 (48%), Gaps = 30/277 (10%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G SK T+++Y C  +QF+ F+          Q + +++  ++  +++ R        ++ 
Sbjct: 22  GKSKTTVKTYVCHVKQFIDFMN---------QPLAEITLDDLVLWVN-RLNLTYTPPTVA 71

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             +  IKS   +  K    +     N+  L K    P    +K+A  ++D   +    E 
Sbjct: 72  NKILCIKSLFSFCVKVGYLS----FNIGALIK----PPKTRDKRAEKILDQGDVKRLIEQ 123

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
                R+  +L L+Y  GLR+SEA++LT  ++  ++  L + GKG K+R + ++P     
Sbjct: 124 A-TPGRDRVLLCLIYTTGLRVSEAVNLTWSDLKGNK--LAVYGKGSKLRFI-IVPD---W 176

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +LE     P      I   +F    GKP++     R I++     G+   T+AH LRHS 
Sbjct: 177 LLEQLQTLP-----KISEFIFATSTGKPIDRIFTHRMIKKCAEKAGIDPKTSAHWLRHSH 231

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           A+H ++NG ++R +Q  LGH +L TT+ Y ++N  +G
Sbjct: 232 ASHAINNGCNVRLLQESLGHSKLETTEKYLHINPNSG 268


>gi|189500094|ref|YP_001959564.1| putative transcriptional regulator, TetR family [Chlorobium
           phaeobacteroides BS1]
 gi|189495535|gb|ACE04083.1| putative transcriptional regulator, TetR family [Chlorobium
           phaeobacteroides BS1]
          Length = 408

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 143/316 (45%), Gaps = 62/316 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           R  S  T QSY+   R+F  FL     E  + Q + Q   ++++ F+S    ++ +   +
Sbjct: 106 RHRSYRTEQSYKAWVRRFGAFL-----EHKSPQAVEQ---SDLQRFLSSLAVERRVSAST 157

Query: 88  LKRSLSGIKSFLKYLKKRKIT-TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
             ++ + +    +++  +K++  E+ + + R  K    LP  L+ ++  ++     L   
Sbjct: 158 QNQAFNALLFLFRHVLDKKVSGMEATVRSNRPRK----LPVVLSREEVRSI-----LEIM 208

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR--IVP-- 201
           +E  W+ A       L+YG GLRI E L L  ++I  D+  L ++ GKG+K R  + P  
Sbjct: 209 NEVTWLMAS------LIYGGGLRIDECLKLRIKDIDFDRGFLTVRSGKGNKDRQTLFPKN 262

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQL--------------------------------PL 229
           L   +R  + E  ++   D    I+                                 P+
Sbjct: 263 LAEPLRNHLSEIRNIHEEDRRNGIEGVSMPGALAYKYPNAGKEWGWFWVFPSANLSADPV 322

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
              IR   + P   Q+  +Q R   G+    + HTLRHSFATHLL  G D+R++Q +LGH
Sbjct: 323 TNTIRRHHMYPTTVQKAFKQAREKAGVVKQASVHTLRHSFATHLLEAGYDIRTVQELLGH 382

Query: 290 FRLSTTQIYTNVNSKN 305
             L TT IYT+V  KN
Sbjct: 383 ANLQTTMIYTHVAKKN 398


>gi|32471281|ref|NP_864274.1| integrase [Rhodopirellula baltica SH 1]
 gi|32396983|emb|CAD71953.1| integrase [Rhodopirellula baltica SH 1]
          Length = 348

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 126/292 (43%), Gaps = 30/292 (10%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G +K T   Y    RQ   F A  + +++T Q +RQ        F+  +  +     SL+
Sbjct: 67  GKAKRTHDGYIRAVRQLSDF-AGCSPDQVTEQHVRQF-------FLHLKNDRNFAYGSLR 118

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
            + SGIK F  +  KR    +  I+ M  L+   +LP  L  +Q   L+ +         
Sbjct: 119 VAFSGIKFFFTHTCKR----DWEIIKMLKLQNITTLPEVLTIEQVHELIGSA-------- 166

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRK 208
                R     + +Y  GLR++EAL L   +I  ++  + +  GKG K R VPL  +  +
Sbjct: 167 --TTQRMFVYFWTVYSLGLRLNEALHLQVSDIDAERGWVHVHRGKGAKDRYVPLPTTTVR 224

Query: 209 AILEYYD-------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            +  Y+        L P D   +            P++    Q  ++Q+ + L      +
Sbjct: 225 LLRNYWASHRHPSFLFPADGRKHDLAKDGVSEATTPMSETAVQGAMKQITKNLRFGKKVS 284

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            HTLRHS+ATHLL  G  L+ IQ  LGH  L TT +Y ++      +   EI
Sbjct: 285 IHTLRHSYATHLLEAGVGLKVIQKYLGHSSLQTTMVYLHLTDTAEANAREEI 336


>gi|317481288|ref|ZP_07940359.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902621|gb|EFV24504.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 366

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 82/152 (53%), Gaps = 7/152 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           ++  ++ L+Y  GLR SE L+LTP++I+ ++  +RI GKG K R   L   + K + EY+
Sbjct: 207 KHRCMISLIYSAGLRRSELLNLTPKDIISERMLVRIMGKGRKCRYSLLSEKLLKELREYF 266

Query: 215 DLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                      Q  LF G   G+  +     + +++     G+      H LRHSFATHL
Sbjct: 267 K------EYRPQKWLFEGETPGEQYSASALVKILKEAASRAGIKHRVHVHMLRHSFATHL 320

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           L  G DLR+IQ +LGH  + TT IY +V S +
Sbjct: 321 LEQGTDLRTIQELLGHNDIKTTSIYLHVTSAH 352


>gi|186471688|ref|YP_001863006.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184197997|gb|ACC75960.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 405

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 150/290 (51%), Gaps = 20/290 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           R ++LQ+L   RG +  T   ++   R FL  +A      +  +T+R LS T++  +I +
Sbjct: 110 RGHYLQHLRELRGFAVSTAAQHDSTLRDFLGRVA------LPDRTLRTLSATDVENYI-R 162

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKSNSLPRALNEKQALT 136
            +++++  ++L+  ++ +++FL+Y + R  IT   + ++     +    PRAL+ K    
Sbjct: 163 LKSREVTRQTLQHVIAHLRAFLRYCEDRGDITPGLHCIDTPRTYRGELPPRALDWKLVPK 222

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           LV++V  H+   T W   R+ A+L+L+   GLR SE  +LT  +I  +  TL +Q +  K
Sbjct: 223 LVNSVDRHS--RTGW---RDHAVLHLMAYYGLRASEVAALTLSSINWESRTLHVQQR--K 275

Query: 197 IRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRY 253
            R V +LP   + I  L  Y  C    +    L L  R   G   + GV   + ++ R  
Sbjct: 276 TRSVLVLPLADRTINLLRRYLRCGRSGSDCPALFLRARSPAGPLTHYGVVDIFCKRAR-L 334

Query: 254 LGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            GL ++ ++++ LRH+FA  LL  G   ++I  ILGH  L +T +Y  ++
Sbjct: 335 SGLAITNSSSYALRHAFAMRLLDRGVGTKAIGDILGHRSLESTCVYLRLD 384


>gi|325922658|ref|ZP_08184403.1| integron integrase [Xanthomonas gardneri ATCC 19865]
 gi|325546862|gb|EGD17971.1| integron integrase [Xanthomonas gardneri ATCC 19865]
          Length = 298

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 86/177 (48%), Gaps = 37/177 (20%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKA---------IL 211
           LLYG G+R+ E L L  +++   +  + ++ GKG K R VPL  S+R+A         ++
Sbjct: 100 LLYGSGMRLMECLRLRIKDVDAARGEIVVRDGKGGKDRRVPLPLSLREALQRQRERALVV 159

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPG---------------------------VFQ 244
              DL      + +   L R        PG                           V Q
Sbjct: 160 HAADLAAGTGRVFLPHALARKYPNADAEPGWQYLFPSARQSRDPRSGRVGRHHVSEEVLQ 219

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R ++  RR  G+  S T HTLRHSFATHLL +G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 220 RAVQVARRRAGIAKSATCHTLRHSFATHLLEDGHDIRTVQELLGHKDVATTQIYTHV 276


>gi|253580998|ref|ZP_04858259.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847661|gb|EES75630.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 312

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 143/298 (47%), Gaps = 36/298 (12%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE---IRAFISK 77
           +L+  E  + L   T+++Y  D  QF  F+            + Q  +TE   + +F+S 
Sbjct: 14  YLKTCETIKKLDSKTIKAYRIDLSQFHTFM------------LPQEDFTEKSTLNSFLSL 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSLPRALNEKQAL 135
              +K   ++ KR ++ +K+F  YL   +  +++    LN++  ++   LPR +      
Sbjct: 62  LH-KKYKPKTAKRKIATLKAFFHYLVYEESLSQNPFEKLNVK-FREPQVLPRIVPN---- 115

Query: 136 TLVDNVLLHTSHETKWIDA---------RNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           T+++ + L T ++ K +           R+ A++ LL+  G+R+SE  SLT   I     
Sbjct: 116 TIIE-IFLRTMYKQKKLAPTTYKYNSILRDIAVIELLFATGVRVSELCSLTLSQIDFTTY 174

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAIL-EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            + I GKG K RI+ +     K IL EYY    F  +++     F     K  +    + 
Sbjct: 175 KIIINGKGSKERILQIGNEDVKEILSEYY--AAFKTDISKTGWFFINRLHKRYSEESVRS 232

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            I +  +   + +  T H  RHSFAT LL +  D+R IQ +LGH  + TT+IYTNV++
Sbjct: 233 MIVKYLKLAAIDMHITPHMFRHSFATLLLESDVDIRYIQRMLGHSSIKTTEIYTNVST 290


>gi|134298247|ref|YP_001111743.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134050947|gb|ABO48918.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 304

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 144/284 (50%), Gaps = 25/284 (8%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-----RQLSYTEIRAFISKRRTQKI 83
           + LSK T++ Y+    + + +     E  I+I+++     RQ  ++ ++  IS R  +K 
Sbjct: 17  KNLSKRTIEWYQFTLNKLIDYCK---ENNISIESMTTPQARQYVFS-LQKSIS-RTGKKY 71

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
            D  +   +  +K    YL + +   ++    ++ +K    +      ++        +L
Sbjct: 72  ADNGINGYIRSVKIMFNYLFEDEYIEKNPFAKVKQIKTDKVIIETFEVEEV-----KRML 126

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
           +  ++  + + R++ ++ +LY  G+RISEA++L   +I  D++  ++ GKG K R+VP  
Sbjct: 127 NQFNKKVYTEFRDALLIQILYDTGIRISEAINLKISDIDTDKNMFKVFGKGHKERMVPFG 186

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQL---RRYLGLP 257
            S+++ IL+Y  L   +  ++ +L    LF    G  L      R I ++    +  G  
Sbjct: 187 RSIKREILKY--LPKRNKEVDKELDEGYLFSTRNGTALTIRNVHRKIVEVGTKAKIKGKR 244

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LS  AHT RH+FA   L NGG+L S+Q+I+GH  LSTT+ Y ++
Sbjct: 245 LS--AHTFRHTFAKTYLVNGGNLFSLQTIMGHNDLSTTRKYVHL 286


>gi|227484989|ref|ZP_03915305.1| possible tyrosine recombinase XerC [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236986|gb|EEI87001.1| possible tyrosine recombinase XerC [Anaerococcus lactolyticus ATCC
           51172]
          Length = 329

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 150/323 (46%), Gaps = 48/323 (14%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIF----------------------LA 51
           LL +  N+L+++   +GLS+ T++ Y  D   F+ +                      + 
Sbjct: 9   LLTDYLNYLKSI---KGLSESTIKEYAYDLETFIEYQIVRKIYNNNKKDYENDFDYKKIN 65

Query: 52  FYTE----EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS--LSGIKSFLKYLKKR 105
           F+ +    EKITIQ        +  AF+S     K  D +  RS  +S IKSF KY+   
Sbjct: 66  FFVDNIFFEKITIQ--------DFYAFLSYLDNDK-NDSATTRSRKISAIKSFYKYMYSE 116

Query: 106 KITTESNILN-MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLY 164
                +NI + + N K S   P  L   +   L++ +   +  +  ++ AR+ AI++   
Sbjct: 117 IEVINTNIADKLTNPKISQRQPVYLTLSETERLIETI---SKEKNTFLKARDLAIVFTFL 173

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
             G+R+SE +S+   ++  D  +  I GKG+K R V L  + +  I  Y  +    L  +
Sbjct: 174 TTGMRLSELISIDLSDVNKD--SFNIIGKGNKERTVYLTKNCQDLINNYIVIRSEYLKDD 231

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DLRS 282
               LF   R   ++    Q  I +     G   S  + H LRH+ AT +   G  D+R+
Sbjct: 232 TVNALFISTRKNRISNRAVQSTIEKYLAKAGFDTSVYSTHKLRHTAATLMYKYGNVDIRA 291

Query: 283 IQSILGHFRLSTTQIYTNVNSKN 305
           ++ ILGH  +STTQIYT++++++
Sbjct: 292 LKDILGHASVSTTQIYTHLDNED 314


>gi|48477921|ref|YP_023627.1| DNA integration/recombination/invertion protein [Picrophilus
           torridus DSM 9790]
 gi|48430569|gb|AAT43434.1| DNA integration/recombination/invertion protein [Picrophilus
           torridus DSM 9790]
          Length = 276

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 82/272 (30%), Positives = 136/272 (50%), Gaps = 33/272 (12%)

Query: 49  FLAFYTEEKITIQTIRQLSYTEIRAFIS--KRRTQKIGD---RSLKRSLSGIKSFLK--- 100
           F  +   E+ ++ TI++   + +R FI+   ++ + I D      KR L+  K + K   
Sbjct: 7   FENYMIGERKSLNTIKEYK-SLVRDFINYINKKPEDINDFDIEDYKRHLAVDKRYSKSSQ 65

Query: 101 YLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS--- 157
           YL  + I      L  R++K    +PR LN  +    +  V L+T+     I A ++   
Sbjct: 66  YLSMKAIKL---FLQSRDIK----IPRTLNAPRRNKKIP-VYLNTNEAKNLIKASSNNRK 117

Query: 158 --AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY 214
             AI+ LL   G+R+SE  +L  ++I  +++ + ++ GKG K RI  ++P     IL  Y
Sbjct: 118 HLAIVSLLLYSGIRVSELCNLKIEDIDLNENIIYVRSGKGGKDRIA-IIPDECSEILRSY 176

Query: 215 DLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
                  N  ++ P    F   +    +    +R I++L    G+    T H LRH+FAT
Sbjct: 177 ------YNDRLKYPGDTFFISNKKSRYDTSTIERLIKKLAVRAGIEKHVTPHVLRHTFAT 230

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            +L NGGD+R IQ ILGH  ++TTQIYT+++ 
Sbjct: 231 SVLRNGGDIRFIQQILGHASVATTQIYTHIDD 262


>gi|255692294|ref|ZP_05415969.1| phage-related integrase [Bacteroides finegoldii DSM 17565]
 gi|260622027|gb|EEX44898.1| phage-related integrase [Bacteroides finegoldii DSM 17565]
          Length = 341

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 149/310 (48%), Gaps = 19/310 (6%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT----IRQLSYTEIRAFISK-RRTQK 82
           ERG+S  T++SY   +  F + L F  +E++ I+     +  ++   +  F+   + T+K
Sbjct: 21  ERGVSPNTIRSY---SESFSLLLNFL-DEQVNIKADNLRLEHITRKTVLNFLDWLQDTKK 76

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
             + +  + L+ ++SF  Y++   +        + ++K      R++N   ++  +  +L
Sbjct: 77  SSNATRNQRLAALRSFCTYMQYEDVKRLEQWQEILSIKVKTHEKRSVN-YLSIDGIKLLL 135

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVP 201
                 TK    R+ A++ LLY  G R+ E + LTP ++ ++    + + GKG K RIVP
Sbjct: 136 AQIPINTK-KGRRDLALISLLYDSGARVQELIDLTPASLKLEKPCHVTLFGKGRKKRIVP 194

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGV---FQRYIRQLRRYLG-- 255
           L       +  Y +    DL+   Q PLF    G+ L N G+      YI   R      
Sbjct: 195 LQDEQVNLLRSYMEENRLDLSGFNQRPLFFNSCGRKLTNSGISYILNNYINHARIQDPEL 254

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +P   + HTLRHS A HLL  G +L  I+ ILGH  + TT+IY   +SK   + +   Y 
Sbjct: 255 IPEKISPHTLRHSKAMHLLQAGVNLVYIRDILGHVSIQTTEIYARADSKQKREALESAYV 314

Query: 316 QTHPS-ITQK 324
              P+ IT++
Sbjct: 315 NMIPNDITER 324


>gi|291557209|emb|CBL34326.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a]
          Length = 301

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 135/322 (41%), Gaps = 59/322 (18%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+    +R L+  T ++Y  D  QF  F +    + I I  I  L              
Sbjct: 10  YLRYCSEQRTLNSKTTKAYRTDLLQFAEFSSGMFSKDIIISYIGCLH------------- 56

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           ++   ++ +R ++ +K+F  YL  ++I    N      +  S   P  L +   + ++  
Sbjct: 57  RQFKPKTARRKIASLKAFAHYLMIQEII---NANPFDKIDTSFREPMVLPKVIPMNIISE 113

Query: 141 VLLHT--------SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +L +         +  ++    RN A+L +L+  G R+SE  +LTP  +     T++I G
Sbjct: 114 ILANAYDVFCQCNTDFSRRNAVRNIAVLEILFATGARVSEICTLTPDMVDLTNHTIKIFG 173

Query: 193 KGDKIRIVPLL-PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF------QR 245
           KG + RI+ +  P V +A+  YY+                  R   L  G F      QR
Sbjct: 174 KGSRERIIQIENPDVLEALNRYYE----------------TFRSDILESGFFFVNKLHQR 217

Query: 246 YIRQLRRYL--------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
              Q  R +        G     T H  RHSFAT LL    D+R IQ ILGH  ++TTQI
Sbjct: 218 LTEQSVRVMISNQAAAIGYNKHITPHMFRHSFATLLLEEDVDIRYIQKILGHSSIATTQI 277

Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319
           YT+V+         EI    HP
Sbjct: 278 YTHVSMAKQK----EILSVKHP 295


>gi|296162695|ref|ZP_06845481.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295887083|gb|EFG66915.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 339

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 82/160 (51%), Gaps = 6/160 (3%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILE 212
           AR+ AIL +LY  G+R  E + LT  +I     T+ I QGKG + R +PL       +  
Sbjct: 168 ARDRAILEVLYSTGMRRMELIGLTVSDIDLSGGTVMIRQGKGRRDRYIPLGERACYWVEW 227

Query: 213 YYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           Y D     L +   +  LF    G+P   G     +++     G+      H LRH+ AT
Sbjct: 228 YCDQIRPSLAVRADEWTLFLTDYGEPFGKGRLSDLVKRYMEMAGIR-EGACHVLRHACAT 286

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGD 308
           H+L NG D+R IQ++LGH  LS+TQIYT V     K GGD
Sbjct: 287 HMLENGADIRFIQALLGHADLSSTQIYTQVAIGKLKLGGD 326


>gi|94310186|ref|YP_583396.1| phage integrase [Cupriavidus metallidurans CH34]
 gi|93354038|gb|ABF08127.1| tyrosine-based site-specific recombinase , N-terminal SAM-like
           protein [Cupriavidus metallidurans CH34]
          Length = 336

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 140/321 (43%), Gaps = 41/321 (12%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+  NLP I+        + +L+ L   +GL   +++SY    R FLIF+A      ++ 
Sbjct: 1   MKDFNLPSII-------HRYFLEYLPRHKGLQSSSIRSYRDSLRLFLIFVAGTHRLGVSE 53

Query: 61  QTIRQLSYTEIRAFI---SKRRTQKIGDRSLKRSLSGIKSFLKYLKK---RKITTESNI- 113
             +  L Y  ++AF+      R   I  R+ +  L+ +  F +Y+ +     + T + + 
Sbjct: 54  LVLEHLDYPAVQAFLHSMEADRGNAISTRNQR--LAALHVFYEYVGRTVPEMLPTSAKVA 111

Query: 114 -LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
            + M+   +        +E QA+       +   H    + +R+ A+L LLY  G R+SE
Sbjct: 112 AIPMKRCPRPEMTFLGRDEVQAMF----ACIPAQHR---LSSRDRALLMLLYNTGARVSE 164

Query: 173 ALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
              L  + + +   + +R+ GKG K R  PL     KA+    D      NL  + P+F 
Sbjct: 165 VAHLKVEQLDLRSPARVRLLGKGSKWRTCPLWNQTAKALQAMLD--ERGTNLPPESPVFV 222

Query: 232 GIRGKPLNP-GVFQRYIRQLRRYLGL---------PLSTTAHTLRHSFATHLLSNGGDLR 281
           G    P+   G+++R    +R Y  L             T H  RH+ A HLL +G ++ 
Sbjct: 223 GASQAPMTRFGIYKR----IRHYATLWEASGHTASAAKVTPHVFRHTTAVHLLESGVEVN 278

Query: 282 SIQSILGHFRLSTTQIYTNVN 302
            I+  LGH  L TT  Y  + 
Sbjct: 279 VIRGWLGHVNLETTNRYAEIT 299


>gi|57640712|ref|YP_183190.1| integrase/recombinase [Thermococcus kodakarensis KOD1]
 gi|73920475|sp|Q5JHA3|XERCL_PYRKO RecName: Full=Probable tyrosine recombinase xerC-like
 gi|57159036|dbj|BAD84966.1| integrase/recombinase [Thermococcus kodakarensis KOD1]
          Length = 282

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 121/234 (51%), Gaps = 20/234 (8%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F++  R     +RSL   +  ++++ ++     +  E+    ++  K   SLP+AL  ++
Sbjct: 50  FLAHLRKNGYSNRSLNLVVQALRAYFRF---EGLDDEAE--RLKPPKVPRSLPKALTREE 104

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG- 192
              L+ +V+  T         R+  I+ LLYG GLR+SE  +L   ++  D+  + ++G 
Sbjct: 105 VKRLL-SVIPPTR-------KRDRLIVLLLYGAGLRVSELCNLKKDDVDLDRGLIVVRGG 156

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R+VP+   +   I  Y +    D +  + +   R  + K     V+  Y+  L+R
Sbjct: 157 KGAKDRVVPIPKYLADEIRAYLE-SRSDESEYLLVEDRRRRKDKLSTRNVW--YL--LKR 211

Query: 253 Y-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           Y     +  T H LRHSFATHLL  G D+R+IQ +LGH  LSTTQIYT V  ++
Sbjct: 212 YGQKAGVEVTPHKLRHSFATHLLEEGVDIRAIQELLGHSNLSTTQIYTKVTVEH 265


>gi|325509244|gb|ADZ20880.1| site-specific recombinase, phage integrase family [Clostridium
           acetobutylicum EA 2018]
          Length = 328

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 92/308 (29%), Positives = 141/308 (45%), Gaps = 34/308 (11%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-------EKITIQTIRQ-----LS 67
           N+L  L   R  S+ T+ +Y+ D   F  FL  Y         E I I  I       ++
Sbjct: 19  NFLNYLRTIRAKSERTIYNYKIDLILFFRFLKLYRGLSKDADFEDIVINDIDSSFLDSIT 78

Query: 68  YTEIRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTESNILNMRN--LKKSN 123
             ++ AF+S     +  G  +  R ++ ++SF KY+  K KI  E+  L + +  L K N
Sbjct: 79  LEDLFAFLSFTEEFRNNGSYARARKIAALRSFFKYISGKAKIIKENPTLELESPSLPKRN 138

Query: 124 SLPRALNEKQAL-TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            +   L E QAL   +D               R+  I+ L   CGLR+SE +S+    I 
Sbjct: 139 PIYLTLEESQALLNSIDGPF----------KERDYCIITLFLNCGLRLSELVSIDISKIK 188

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL---CPFDLNLNIQLPLFRGIRGKPLN 239
            D  TL I GKG+K R + L     KAI +Y  +       + +  +  LF   +   +N
Sbjct: 189 GD--TLTILGKGNKERTIYLNEMCLKAIEDYIPVRNQKASSIKIEDKDALFISRKLTRIN 246

Query: 240 PGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQI 297
               +  +++      L     T H LRH+ AT +   G  D+RS+Q ILGH  +STTQI
Sbjct: 247 QRTIELMVKKYALKANLDYEKLTPHKLRHTAATLMYKYGNVDIRSLQQILGHESVSTTQI 306

Query: 298 YTNVNSKN 305
           YT+++ +N
Sbjct: 307 YTHIDDEN 314


>gi|28866934|gb|AAM95157.1| site-specific recombinase IntIA [Listonella anguillarum]
          Length = 320

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 86/188 (45%), Gaps = 38/188 (20%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210
           I+ R    + LLYG GLR+ E + L  Q+I  D   +R+ QGKG K R V L   +   +
Sbjct: 118 IEPRYQLQIMLLYGSGLRLMECVRLRIQDIDLDYGAVRVWQGKGGKNRTVTLAKELYPQL 177

Query: 211 LE-------YYD----------------------LCPFDLNLNIQLPLF-------RGI- 233
            E       YYD                        P++ N +   P          G+ 
Sbjct: 178 AEQQALAKRYYDKDMQTKGYGGVWLPNALREKYPSAPYEFNWHYLFPSNLLTLDENSGLK 237

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N    QR +R+      +  S + HTLRHSFATHLL  G D+R++Q  LGH  + 
Sbjct: 238 RRHHINESALQRAVRKTAHDAEIQKSVSCHTLRHSFATHLLEAGADIRTVQEQLGHSDVK 297

Query: 294 TTQIYTNV 301
           TTQIYT+V
Sbjct: 298 TTQIYTHV 305


>gi|258648850|ref|ZP_05736319.1| phage-related integrase [Prevotella tannerae ATCC 51259]
 gi|260850864|gb|EEX70733.1| phage-related integrase [Prevotella tannerae ATCC 51259]
          Length = 341

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 144/314 (45%), Gaps = 28/314 (8%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDR 86
           E GLS  T+++Y      F+ F+      K    ++  L+   +  F+      K  G  
Sbjct: 20  ECGLSHNTIRAYGNTFLSFIDFMEKTRRVKADRLSLEHLTRDNVSDFLRWTEENKGCGIS 79

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL--VDNVLLH 144
           +  + L+   +F KY+         +I ++   +   S+    +EKQ+++   VD + L 
Sbjct: 80  TRNQRLAAFHTFSKYM------LYGDIFHLEQWQSILSIKSKRSEKQSVSYLSVDGIKLL 133

Query: 145 TSHETKWIDARNS----AILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRI 199
            S     ++ RN     A++ LLY  G R+ E + LTP ++ +     + + GKG K R+
Sbjct: 134 LSLIP--VNTRNGLRDLALIALLYDSGARVQELIDLTPMDLHLVKPYYVSLFGKGRKRRL 191

Query: 200 VPLLP---SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGV---FQRYIRQLRR 252
           VPL      + K  +E   L    LN   Q PLF   RG+ L N GV     RY+R    
Sbjct: 192 VPLQEQQVELLKKYMEAEGLLKQSLN---QHPLFANNRGEKLTNAGVTFILMRYVRNAHV 248

Query: 253 YLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                +P   + H+LRHS A HLL  G +L  I+ ILGH  + TT+IY   +SK   + +
Sbjct: 249 ADPDLVPAKVSPHSLRHSKAMHLLQAGVNLVYIRDILGHVSIQTTEIYARADSKQKREAL 308

Query: 311 MEIYDQTHPSITQK 324
              Y    P++ +K
Sbjct: 309 EAAYIDVIPTMDKK 322


>gi|319426956|gb|ADV55030.1| integrase family protein [Shewanella putrefaciens 200]
          Length = 324

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 114/243 (46%), Gaps = 12/243 (4%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL-NEKQALTLVD 139
           Q +G +  +  ++ IK+F++ +  + + + + +  +       +LP+AL +  +   ++ 
Sbjct: 77  QPLGQQQKRNLVTYIKTFVQCMYSKGLLSANTLAGIELPHSGRALPKALFSVTEIEKILA 136

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR 198
             LL   H       R+ AIL + +  G+R SE + L   +I      LR+  GKG K R
Sbjct: 137 QSLLFGVH-----GLRDRAILEVFFATGIRRSELMMLDIDDIDFTAKLLRVNHGKGQKER 191

Query: 199 IVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           IVP+     + ++ Y   L P    +     LF    G  L          +  R  G+ 
Sbjct: 192 IVPMSERACEWLVFYLSKLRPMISFIGSGGALFLANNGTRLRANQLSEMAGRYVRLSGIK 251

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            +   H  RH+ AT +L NG +LR +Q +LGH  + TTQIYT+V+       + E+Y  T
Sbjct: 252 RTGACHLFRHATATTMLDNGAELRHVQEMLGHASILTTQIYTHVSRAK----LTEVYGST 307

Query: 318 HPS 320
           HPS
Sbjct: 308 HPS 310


>gi|163788404|ref|ZP_02182850.1| tyrosine type site-specific recombinase [Flavobacteriales bacterium
           ALC-1]
 gi|159876724|gb|EDP70782.1| tyrosine type site-specific recombinase [Flavobacteriales bacterium
           ALC-1]
          Length = 376

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 130/274 (47%), Gaps = 25/274 (9%)

Query: 31  LSKLTLQSYECDTRQ--FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           L KL L+ Y  +T +   L F  F    K   + + Q++  ++R +I K   +   D  +
Sbjct: 111 LDKLQLKKYANNTVKSYILAFETFINYHKA--KELIQINENDVRNYILKLIQENKSDSYI 168

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
             +++ IK + + +    +   +    +   +K+  LP+ L+++  L ++ N        
Sbjct: 169 NIAINSIKFYYESV----LGMPNRFYQIERPRKAKKLPKVLSKEDVLKVITNTN------ 218

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVR 207
               + ++  I+ LLY  G+R +E + L   +I   +  +RI   KG K R   L  ++ 
Sbjct: 219 ----NLKHKCIVSLLYSSGIRRNELIHLKISDIDSKRMLIRIDAAKGKKDRYTLLSHALL 274

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           K + +YY           +  +F G+ GK  +     + ++       + ++ T H LRH
Sbjct: 275 KDLRDYYK------QWKPEKYIFEGLYGKQYSAQSVGQIVKNAAIKARIQITVTPHMLRH 328

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFATHLL +G D+R IQ +LGH    TT+IYT+V
Sbjct: 329 SFATHLLEDGVDIRQIQVLLGHSSTKTTEIYTHV 362


>gi|118581028|ref|YP_902278.1| integron integrase [Pelobacter propionicus DSM 2379]
 gi|118503738|gb|ABL00221.1| integron integrase [Pelobacter propionicus DSM 2379]
          Length = 468

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 136/310 (43%), Gaps = 59/310 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-LSYTEIRAFISKRRTQKIGDRS 87
           R  S+ TL++Y   +RQF  FL   + +++    +++ ++Y  ++         K+   +
Sbjct: 166 RHYSRKTLKTYANWSRQFQRFLKDKSPQELATADVKEYMTYLAVQC--------KVAAST 217

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++ + +    ++  KR+      + ++   KKS  +P  L+  +    +D +L   S+
Sbjct: 218 QNQAFNALLFLYRHGLKREF---GELRDVPRAKKSLYIPVVLSRPE----IDAILAQLSY 270

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL----L 203
                    + ++ LL+GCGLR  E L L  ++   D   L I GKG K R VPL    +
Sbjct: 271 PF-------NLVVKLLFGCGLRQFECLQLRVRDFNFDAGILTIHGKGKKDRTVPLPESLV 323

Query: 204 PSVRK------------------------AILEYYDLCP-------FDLNLNIQLPLFRG 232
           P +R                         A+ + Y   P       F    N+ L    G
Sbjct: 324 PELRAQIKVVGELHDRDLSAGYDGVFLDDAVEKKYPKAPKEFVHQWFFPQKNLTLVAETG 383

Query: 233 IRGK-PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
            R +  L+    Q  +    R   +P   T+HT RHSFATHLL  G D+R IQ++LGH  
Sbjct: 384 QRRRWHLHESELQEALYPAVRRAKIPKRVTSHTFRHSFATHLLQAGYDIRVIQTLLGHSS 443

Query: 292 LSTTQIYTNV 301
           L TT IYT+ 
Sbjct: 444 LKTTMIYTHC 453


>gi|330874852|gb|EGH09001.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 149

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 81/158 (51%), Gaps = 19/158 (12%)

Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS--------VRKAILEYYDLCPFDL 221
           ++  +SLT + +   Q  LR+ GKG K R+VP+           +R A  E     P D+
Sbjct: 1   VTAVISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAIVWVERYLRGARDELLGGKPSDV 60

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
                  LF   RG  +    F   I+      G+  S + HTLRH+FATHLL++G DLR
Sbjct: 61  -------LFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLRHAFATHLLNHGADLR 113

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            +Q +LGH  LSTTQIYT++        + E++ + HP
Sbjct: 114 VVQMLLGHSDLSTTQIYTHLARAR----LQELHAKHHP 147


>gi|332983016|ref|YP_004464457.1| integrase family protein [Mahella australiensis 50-1 BON]
 gi|332700694|gb|AEE97635.1| integrase family protein [Mahella australiensis 50-1 BON]
          Length = 290

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 147/301 (48%), Gaps = 29/301 (9%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           F+ L E +N L  L  E+ L   T+++Y  D  +F+ +L      + +   I  +   E 
Sbjct: 2   FDHLDEFKNEL--LRQEKSLH--TVRAYVSDVTEFIKWLTDMLGTEYSPDKITSVDIQEF 57

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           R+++   R  K    S+ R L+ ++ +   L+   I   +  + ++ ++          +
Sbjct: 58  RSYLHNIRQNK--PTSVNRKLTALEQYCSVLESMGIIKNNPAIGVKKMR--------YQK 107

Query: 132 KQALTLVDNVLLHTSHETKWIDA--RNSAILYLLYGCGLRISEALSLTPQNIM--DDQST 187
           +  +  +DN  L+      +++A  R+ AI  L+   GLR +E  +L   +++  D + T
Sbjct: 108 QSQVEALDNKDLYKLKRMFYMEANKRDIAIFELMINTGLREAEVCNLQLSDVIVSDRKGT 167

Query: 188 LRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           + ++ GKG+K R VPL    RKAI  Y ++ P   N      LF   +   L+     R 
Sbjct: 168 VIVRSGKGEKYREVPLNIDARKAITAYLEVRPDRGNY-----LFVSNKSDRLSESQLYRI 222

Query: 247 IRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSK 304
           IR   +Y  +  ++   H LRH+FAT LL +GG DL +++ +LGH  ++TT IYT  N +
Sbjct: 223 IR---KYADMADVNVYPHKLRHTFATKLLRDGGVDLVTVKELLGHTSINTTAIYTKANKQ 279

Query: 305 N 305
           +
Sbjct: 280 D 280


>gi|255525234|ref|ZP_05392176.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296188719|ref|ZP_06857107.1| phage integrase [Clostridium carboxidivorans P7]
 gi|255511097|gb|EET87395.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296046983|gb|EFG86429.1| phage integrase [Clostridium carboxidivorans P7]
          Length = 330

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 151/314 (48%), Gaps = 36/314 (11%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY----TEEKITIQTI----------RQ 65
           ++L  LE  +G S+ T++ Y+ D   F  FL  Y     +E +  + I          R+
Sbjct: 19  DFLNYLETIKGKSQNTIKGYKIDLTMFFRFLKIYKGLINDETLDFEEIPIGDIDNSLLRK 78

Query: 66  LSYTEIRAFIS---KRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKK 121
           ++  ++ AF+S   K R      R+  R ++ +KSF K+L  R K+  E+  +++ + K 
Sbjct: 79  ITLADLYAFLSFTEKYRQNSTYARA--RKVATLKSFFKFLSSRAKVIDENPAVDLESPKI 136

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           S   P  L   ++ +L+  V    S   K    R+  I+ L   CGLR+SE  S+   NI
Sbjct: 137 SKRNPTYLTLDESKSLLKAV----SGRNK---ERDYCIITLFLNCGLRLSELCSINISNI 189

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNP 240
             D   L + GKG+K R V L  +  KA+  Y  +   +++  I    LF       ++ 
Sbjct: 190 KGD--ILTVIGKGNKERTVYLNNACIKALNNYLKVRSENIDKIIDKDVLFISKNHTRMSK 247

Query: 241 GVFQRYIRQLRRYLGLPLST---TAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQ 296
              +  ++  +  +   L +   T H LRH+ AT +   G  D+RS+Q ILGH  +STTQ
Sbjct: 248 RTVEVMLK--KHLINAELDSEKYTPHKLRHTAATLMYKYGNVDIRSLQKILGHENVSTTQ 305

Query: 297 IYTNVNSKNGGDWM 310
           IYT+V+ +   D +
Sbjct: 306 IYTHVDDEKLRDAV 319


>gi|183219889|ref|YP_001837885.1| putative integrase/recombinase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910016|ref|YP_001961571.1| tyrosine site-specific recombinase XerC [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167774692|gb|ABZ92993.1| Tyrosine site-specific recombinase XerC [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167778311|gb|ABZ96609.1| Putative integrase/recombinase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 428

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 106/214 (49%), Gaps = 20/214 (9%)

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
           ++F+ Y   R +  +   L    +K    LP  L+ ++   + +++           + +
Sbjct: 203 QAFIFYF--RDVRQQMKHLKFPKIKSDVKLPEVLSAEETRAIFNSL----------PNIK 250

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYY 214
           +  +L + Y  GLR+SE + L  ++I  +++ +RI QGKG K R   L  S+   + EY 
Sbjct: 251 HKMLLLISYSAGLRVSEVIHLKTKDIDLERNMIRITQGKGKKDRYTILANSLVFELQEYL 310

Query: 215 DLCPFDLNLNIQ------LP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
            +  ++L L         +P LF G   KPL+    +    Q      +    T H+LRH
Sbjct: 311 KIREYNLLLKYSYNEVKNIPWLFPGAGTKPLHIRTAETIFNQAAAKAKITKKVTFHSLRH 370

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +FATHLL  G DLR IQ++LGH  + TTQIYT V
Sbjct: 371 AFATHLLELGTDLRMIQTLLGHSSVRTTQIYTKV 404


>gi|148543984|ref|YP_001271354.1| tyrosine recombinase XerD subunit [Lactobacillus reuteri DSM 20016]
 gi|184153379|ref|YP_001841720.1| integrase/recombinase [Lactobacillus reuteri JCM 1112]
 gi|194467806|ref|ZP_03073792.1| integrase family protein [Lactobacillus reuteri 100-23]
 gi|227364897|ref|ZP_03848942.1| tyrosine recombinase [Lactobacillus reuteri MM2-3]
 gi|325682478|ref|ZP_08161995.1| integrase/recombinase XerD [Lactobacillus reuteri MM4-1A]
 gi|148531018|gb|ABQ83017.1| tyrosine recombinase XerD subunit [Lactobacillus reuteri DSM 20016]
 gi|183224723|dbj|BAG25240.1| integrase/recombinase [Lactobacillus reuteri JCM 1112]
 gi|194452659|gb|EDX41557.1| integrase family protein [Lactobacillus reuteri 100-23]
 gi|227070044|gb|EEI08422.1| tyrosine recombinase [Lactobacillus reuteri MM2-3]
 gi|324978317|gb|EGC15267.1| integrase/recombinase XerD [Lactobacillus reuteri MM4-1A]
          Length = 297

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 137/292 (46%), Gaps = 15/292 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E   +L  L+ ER LS  TL SY+ D  Q + +L     E   I   +Q+ +  +   ++
Sbjct: 4   EVAAFLAFLKDERQLSDNTLMSYQRDLEQTVTYL-----EDRGIVDWQQVDHYLLIDLLN 58

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA---LNEKQ 133
             R Q   + ++ R +S ++ F KY+ +    T  N + M + + + + P A   L EK+
Sbjct: 59  SLRQQGKANSTINRVISSLRQFYKYMIRHHNLT-INPMEMIDHQYTFNQPPAPVILTEKE 117

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                   LL     +  I  R+ A+L ++   G+R+SE ++L    +  D   L++ GK
Sbjct: 118 I-----EQLLAVPDVSTPIGLRDRALLEIMDATGMRVSEVIALDLTALHLDVKLLQLTGK 172

Query: 194 GDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
            ++ R++PL     K + +Y D   P  L    +  +F    G PL      + +++   
Sbjct: 173 NERERMIPLSQPAVKWLTDYLDRGRPRLLRDEHETRVFLNAHGYPLTRQGIWKKMKEWVS 232

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              +    T  T+R+SFA HL+ NG D++ IQ ILG+  +   Q Y  V+ +
Sbjct: 233 EAKIKKEVTPQTMRYSFAVHLIENGADVQLIQEILGYNAMKALQPYLQVSPQ 284


>gi|187933384|ref|YP_001886557.1| tyrosine recombinase XerD [Clostridium botulinum B str. Eklund 17B]
 gi|187721537|gb|ACD22758.1| tyrosine recombinase XerD [Clostridium botulinum B str. Eklund 17B]
          Length = 292

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 139/305 (45%), Gaps = 41/305 (13%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLA-----FYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + G S+ T+ +Y  D   +L FL       Y  +K+T+            A+I       
Sbjct: 14  DSGKSENTIYAYVTDVTLYLKFLDKKGIDVYKSDKLTVM-----------AYIQYLLESG 62

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV- 141
             +RS+ R +  ++SF  YLK + +  E   +  ++ K +  LP+ L        VD V 
Sbjct: 63  KSERSINRIVISLRSFYSYLKSQSLINEVPKIEYKSSKNNRKLPQILT-------VDEVD 115

Query: 142 -LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            ++ T  +      R++A+L L+Y  G+++SE +SL   +I  +   +R     +  R++
Sbjct: 116 KIIRTVEKDCPKGIRDNALLELMYATGMKVSELISLNVDDINLELHFVRCTDSRNFERLI 175

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP------LFRGIRGKPLNPGVFQRYIRQLRRYL 254
           P+  S  +A+ EY       L++  ++       LF  + G  L      R +++  +  
Sbjct: 176 PIGRSACRALNEY-------LSIRYKIAECGVPNLFVNLNGNKLTRQGIWRIVKEYSKRA 228

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            +      +T RHSFA HLL NG ++R++Q +LG+  L+    Y  + +    D +  IY
Sbjct: 229 HIDKDVNLNTFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTYYEIIN---NDKINFIY 285

Query: 315 DQTHP 319
             THP
Sbjct: 286 MNTHP 290


>gi|218295372|ref|ZP_03496185.1| integrase family protein [Thermus aquaticus Y51MC23]
 gi|218244004|gb|EED10530.1| integrase family protein [Thermus aquaticus Y51MC23]
          Length = 313

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 116/228 (50%), Gaps = 16/228 (7%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           ++   R ++  L+ ++S+ +YL + R          +   K    LP     ++ L  ++
Sbjct: 82  ERWAPRRVQGFLAALRSYYRYLAQVRGEAVADPTEGIGRPKAGRRLPLHPAPEELLRFLE 141

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGDK 196
              L    E + +    +A+   LYG GLRISEALSL  +NI+ +      +R+ GKG+K
Sbjct: 142 A--LAQEKEARLL----TALARFLYGTGLRISEALSLKGKNIVQEGGRPVAVRVVGKGNK 195

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLG 255
            R+VPL  + + A+LE   L P   N+N+     +G  RG+  +    +   R+     G
Sbjct: 196 ERLVPLSRTAQSALLE---LGPPQGNVNV-FTFAQGRYRGRVPSARYVEAKFREAALRAG 251

Query: 256 L-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           L P   T H LRH++AT L+  G  L +++ +LGH  ++TTQIY + +
Sbjct: 252 LDPRRFTPHKLRHAYATFLVERGVQLDAVKDLLGHESIATTQIYLHAS 299


>gi|303242648|ref|ZP_07329122.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302589787|gb|EFL59561.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 298

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 143/301 (47%), Gaps = 41/301 (13%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  L+ E+ +S  T+ +Y  D +QFL FL     +      +  ++   IR +++  +T
Sbjct: 10  FIDYLKAEKDVSHYTVDNYTSDFKQFLNFLRVNGIQP----KLNTVTTPIIRRYLAHLKT 65

Query: 81  QK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV- 138
            K     +++R +  + S+ K+L +++   ++ +  +   K   ++P+ L+ ++   L+ 
Sbjct: 66  DKNYAVETIRRRVHCLSSYYKFLMEQEYIMKNPMFAIHAPKSPETIPKYLSIEEIQLLLT 125

Query: 139 -------DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
                  D+VL            RN  I       G+R  E L L   +I   +  + ++
Sbjct: 126 MPQKYSPDSVL------------RNLCIFECFLMTGMRRQELLDLNWDDIDFGEKIITVR 173

Query: 192 -GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-----FRGIRGKPLNPGVFQR 245
            GKG K R++P+   +   + +Y         L  +LPL     F   +G  L+    ++
Sbjct: 174 NGKGKKQRVIPMTEPLISDLWKY---------LQTRLPLTNHALFISAKGNRLSATPLEQ 224

Query: 246 YIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             R   R  GL     T HTLRH++A+HL  NG  + SIQ +LGH  L++TQIY +VN++
Sbjct: 225 TFRLYMRKSGLDKKGYTIHTLRHTYASHLALNGASILSIQKLLGHSDLNSTQIYAHVNTE 284

Query: 305 N 305
           +
Sbjct: 285 H 285


>gi|149194209|ref|ZP_01871307.1| Phage integrase [Caminibacter mediatlanticus TB-2]
 gi|149136162|gb|EDM24640.1| Phage integrase [Caminibacter mediatlanticus TB-2]
          Length = 268

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 124/240 (51%), Gaps = 34/240 (14%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL---NEKQALTLVD 139
           +  +++ + +S ++SF  +LK+     +  I+   ++K   +LP+ +   N K+AL + +
Sbjct: 58  LSKKTIAKKVSVLRSFFDFLKQE--GYKFKIVGDEHIKVPKTLPKPISLENIKEALKVAN 115

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                       +D   + I+  ++  GLRISEAL++   +I  D   + I+GKG+K RI
Sbjct: 116 ------------MDEYLAIIV--IFSLGLRISEALNIKLSDIHGDW--IEIKGKGNKTRI 159

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +PL P +++ I +Y       L +N +        GK  +    +  I++  + +G+   
Sbjct: 160 LPLHPKLKEFIQKY-------LKINPKKEYLFEKDGKKYSENQLRYNIQKAFKKIGI--H 210

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T H LRHSFAT++L  G  +  +  +LGH  +STTQIYT +++       ++ Y + HP
Sbjct: 211 ATPHQLRHSFATYMLDKGARINDVSELLGHEFISTTQIYTKLSN----SLKLKNYLKAHP 266


>gi|28210981|ref|NP_781925.1| site-specific tyrosine recombinase XerC [Clostridium tetani E88]
 gi|28203420|gb|AAO35862.1| putative integrase, recombinase [Clostridium tetani E88]
          Length = 328

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 153/322 (47%), Gaps = 37/322 (11%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE--------- 56
           L  I   EL ++  N+L  L   +  S  T+ +Y+ D   F  FL  Y  +         
Sbjct: 4   LKNIYDPELPQQLNNFLNYLTTVKERSPNTMSAYKVDLVMFFRFLKLYKTKLPKDIEFDD 63

Query: 57  ----KITIQTIRQLSYTEI---RAFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKIT 108
                I  + IR+++ T++    AF+   R    G  +  R ++ +KSF K+L  K KI 
Sbjct: 64  IDISDIDDEFIRKITLTDLYSFMAFLDNYRDN--GSYAKARKVATLKSFFKFLYSKVKIL 121

Query: 109 TESNILNMRN--LKKSNSLPRALNE-KQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
            E+  + + +  +KK N     L E K+ L  +D              AR+  I+ L   
Sbjct: 122 EENPAIELESPKIKKRNPTYLTLEESKRLLASIDGT----------NKARDYCIITLFLN 171

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LN 224
           CGLR+SE  S+    I +D  TL + GKG+K R + L  +  KA+ +Y  +   +L+ + 
Sbjct: 172 CGLRLSELCSIDISKIKED--TLYVIGKGNKERTIYLNKACLKAVEDYLKVRNKNLDKIK 229

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DLRS 282
            +  LF       +N    +  +++  +   L     T H LRH+ AT +  +G  D+RS
Sbjct: 230 DKDALFISRNNTRINKRTVEIMLKKYLKKANLDEEKYTPHKLRHTAATLMYKHGDVDIRS 289

Query: 283 IQSILGHFRLSTTQIYTNVNSK 304
           +Q ILGH  +STTQIYT+V+++
Sbjct: 290 LQKILGHENISTTQIYTHVDNE 311


>gi|50123203|ref|YP_052370.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|50123212|ref|YP_052379.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|49613729|emb|CAG77180.1| probable integrase/recombinase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613738|emb|CAG77189.1| probable integrase/recombinase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 350

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 110/233 (47%), Gaps = 13/233 (5%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD-NVLLHTSHETK 150
           L+GI+   ++L KR +   +    +   K+   LP      Q L++ +   +L       
Sbjct: 99  LTGIRMLWRWLLKRHVILYNPAEMLTLPKEEKRLP-----AQVLSVEETGGVLQAMESGT 153

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKA 209
            +  RN  IL +L+  G+R +EA+SL   +I   +  + + QGKG+K R+VPL     K 
Sbjct: 154 VLGLRNRVILEVLWSSGVRRAEAVSLMLSDIDLSRGVMMVRQGKGNKDRVVPLGERACKW 213

Query: 210 ILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG-LPLSTTAHTLRH 267
           +  Y +   P          LF    G  L      +   +  R  G L      H  RH
Sbjct: 214 LARYLNHARPALARRYDSGHLFISHNGTGLARVTLTKMAGKAIRETGHLDKPGACHVFRH 273

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           S AT +L NG D R IQ+ILGH +L TTQIYT V   +    + ++++QTHP+
Sbjct: 274 SMATQMLENGADTRHIQAILGHEKLETTQIYTRVAISH----LQKVHEQTHPA 322


>gi|330974049|gb|EGH74115.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 320

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 130/288 (45%), Gaps = 26/288 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W  NL+  R     T ++Y+ D   F  F+   + +       R ++ + + A+ +    
Sbjct: 32  WFANLDNPR-----TRRAYQNDLTDFSSFIGLASADDF-----RLVTRSHVLAWRADLEH 81

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   +++R L+ + S   +L +       N ++     K  S     NE +   L D+
Sbjct: 82  RGLAGATIRRKLAALASLFDHLLENNAIAGGNPVHGVKRPKIES-----NEGKTPALGDH 136

Query: 141 ---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGD 195
               LL    E+     R+ AIL +L   GLR  EA  L   +I + +    L+I GKG 
Sbjct: 137 QAKALLDAPDESTLKGLRDRAILAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKGG 196

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV----FQRYIRQLR 251
           K+R +PL P     I  Y +     L+ + ++PLF  +RGKP   GV        +    
Sbjct: 197 KVRYLPLHPVAAGRIHLYLERSGHHLD-DKKVPLFIPLRGKPTGAGVSANGIYTVVEAYA 255

Query: 252 RYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +  G+ ++    H LR + AT+ L +  D+  +Q+ LGH  +STT+IY
Sbjct: 256 KKAGIEVAGLGVHGLRATAATNALDHEADIAKVQAWLGHANISTTKIY 303


>gi|323704109|ref|ZP_08115704.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
 gi|323530929|gb|EGB20873.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
          Length = 290

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 140/284 (49%), Gaps = 27/284 (9%)

Query: 49  FLAFYTEEK------ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102
           FL F  +EK      + ++ + +    +   +I ++R      R++   L+ + SF +YL
Sbjct: 1   FLTFMKDEKGILADKVMLKHVNKEIVVDFLDWIEEKRHCCAATRNV--PLAALHSFFQYL 58

Query: 103 KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD----NVLLHTSHETKWIDARNSA 158
           + +   +  N+L  + +    S+P    EK +++ +      +LL     +     R+ A
Sbjct: 59  QYQ---SPENLLEWQRIL---SIPVKKTEKPSISYLSLEGIRLLLEQPDCSTRNGRRDLA 112

Query: 159 ILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           +L L+Y  G R+ E + LTP  + +D   T+++ GKG+K R+VPLL  V+   L+ Y + 
Sbjct: 113 LLSLMYDSGARVQEIIDLTPSMVRLDVPCTVKLIGKGNKSRVVPLL-DVQVKFLKTYMVE 171

Query: 218 PFDLNLNIQL-PLFRGIRGKPLNPG----VFQRYIRQ--LRRYLGLPLSTTAHTLRHSFA 270
              L  +  L PLF   R + L       + ++Y +Q  L+    +P   + H LRHS A
Sbjct: 172 QKLLEPHANLYPLFSNSRKEKLTRAGVNYILEKYAKQARLKNPTLIPEKLSCHCLRHSKA 231

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            HLL +G +L  I+ ILGH  +  T++Y   +S+   + + + Y
Sbjct: 232 MHLLQSGVNLVYIRDILGHTSVQVTEVYARTDSRQKREAIEKAY 275


>gi|307354005|ref|YP_003895056.1| integrase family protein [Methanoplanus petrolearius DSM 11571]
 gi|307157238|gb|ADN36618.1| integrase family protein [Methanoplanus petrolearius DSM 11571]
          Length = 302

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 135/311 (43%), Gaps = 52/311 (16%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAF---YTEEKITIQ-------------TIRQLSYTEIR 72
           R  S  T+ SYE   ++F  +L       +EK+ I                  +   +  
Sbjct: 20  RNFSPRTIASYEGAVKKFGYYLWIRRNMGQEKLVIYWNDLANARLDTEIDTTPMMINDFL 79

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           AF++  R  K    +L+R +S + SF +Y   + +   + +  +   K      R L   
Sbjct: 80  AFLTSLRDYKAT--TLQRIISSLSSFYRYCYTQGVVDSNPLAAIDRPKIKEKELRYLKHN 137

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q L+L +++           + R+  I+  +Y  G+R+SE  S+  ++I  +   +R++G
Sbjct: 138 QVLSLFNSIN----------NERDRLIIRTIYATGVRVSELCSINIEDIDFEDRIIRVKG 187

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP----GVFQRYIR 248
           KG KIR V +     + I  Y        +  I  PLF G +GK ++P     +F+RY  
Sbjct: 188 KGGKIRTVFIDEDTLQDINHY-------TSGRISGPLFEGQQGKNISPRTVQHIFERY-- 238

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                   P   T H +RHS+A+ L     +LR +Q  LGH  + TT++Y + +     D
Sbjct: 239 -------APTGITPHKIRHSYASELYRRSKNLRVVQENLGHSSIQTTEVYLHTDI----D 287

Query: 309 WMMEIYDQTHP 319
              E+Y +  P
Sbjct: 288 ERREVYKKYFP 298


>gi|213585520|ref|ZP_03367346.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 259

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 126/263 (47%), Gaps = 15/263 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER L++ TL +Y  D    + +L    +   T Q        +++  +++R
Sbjct: 9   EQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQA------DDLQTLLAER 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++ F ++L + K   +     + + K    LP+ L+E Q   L+
Sbjct: 63  VEGGYKATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG+K R
Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +VPL       +  Y +   P+ LN ++I + LF   R + +    F   I+      G+
Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236

Query: 257 PLST-TAHTLRHSFATHLLSNGG 278
                + H LRH+FATHLL++G 
Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGA 259


>gi|39997562|ref|NP_953513.1| bifunctional hypothetical protein/integrase [Geobacter
           sulfurreducens PCA]
 gi|39984453|gb|AAR35840.1| hypothetical protein/integrase, fusion [Geobacter sulfurreducens
           PCA]
 gi|298506503|gb|ADI85226.1| integrase domain protein [Geobacter sulfurreducens KN400]
          Length = 457

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 132/310 (42%), Gaps = 59/310 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-LSYTEIRAFISKRRTQKIGDRS 87
           R  S+ TLQ+Y    RQF  FL      ++T   +++ L++  ++          +   +
Sbjct: 155 RHYSRKTLQTYAKWCRQFQRFLKNKPPVELTTADVKEYLTWLAVKC--------NVAAST 206

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++ + +    ++  KR       + ++   KKS  +P  L+  +    +D +L H  H
Sbjct: 207 QNQAFNSLLFLFRHALKRDF---GELRDVPRAKKSLYVPVVLSRAE----IDAILAHLYH 259

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV- 206
                   +  I+ LL+GCGLR+ E L L  ++   D   L + GKG K R +PL  S+ 
Sbjct: 260 P-------HGLIVKLLFGCGLRLFECLQLRVRDFNFDAGILTVHGKGKKDRTLPLPESIL 312

Query: 207 --------------RKAILEYYDLCPFDLNLNIQLP----------LFRG---------- 232
                          K + + YD    D  +  + P           F            
Sbjct: 313 NDLQRQMRRVKELHEKDLEQGYDGVFLDDAMEKKYPKAPKELIHQWFFPQKDLTPVEANG 372

Query: 233 -IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
            +R   ++  + Q+ +    R   +P   TAHT RHS+ATHLL    D+R+IQ+ LGH  
Sbjct: 373 QLRRAHVHESLLQKALYLAVRKAKIPKRVTAHTFRHSYATHLLQANYDIRTIQTKLGHAS 432

Query: 292 LSTTQIYTNV 301
           L TT IYT+ 
Sbjct: 433 LKTTMIYTHC 442


>gi|302387141|ref|YP_003822963.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302197769|gb|ADL05340.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 339

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 146/308 (47%), Gaps = 29/308 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTE------EKITIQTIRQLSYTEIRAFISKRRTQK 82
           + +SK T+ SY CDT  F + L +  +      EKI+++ I     ++   ++ + R   
Sbjct: 22  KNVSKNTISSY-CDT--FRLLLKYCRDVHNLSIEKISMKDIDADLVSQFMLWLEEERHCG 78

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           I  R+  + L  I+SF +Y++  +     N+LN + +       ++L     LT+ +  L
Sbjct: 79  ISTRN--QRLMAIRSFFRYVQGEQ---PQNLLNCQKVLNIPPKKKSLPVVTYLTVEEMKL 133

Query: 143 LHTSHETKWIDARNS-AILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIV 200
           L     T   + R   A+L +LY  G R+ E   LT +NI +++ + + + GKG K R V
Sbjct: 134 LLAQPNTSTPEGRRDLALLCILYDTGGRVQEIADLTVRNIRLENPAKVHLTGKGRKSREV 193

Query: 201 PLLPS----VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQRYIR-QLR 251
           PLLP     + + ++E+  L P   +     PLF       L       +  +Y      
Sbjct: 194 PLLPRTVQLLERYMIEHRLLAPEKQDH----PLFCNRHNSKLTRSGISYILNKYAELASS 249

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           + L  P S + H LRH+ A HLL  G ++  I+ ILGH  + TTQIY + N++     + 
Sbjct: 250 QSLTFPESISPHVLRHTKAMHLLQAGVNIIYIRDILGHASVDTTQIYASANTQMKRAALE 309

Query: 312 EIYDQTHP 319
           ++ D   P
Sbjct: 310 KLGDSPAP 317


>gi|332971298|gb|EGK10261.1| tyrosine recombinase XerC [Desmospora sp. 8437]
          Length = 302

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 134/295 (45%), Gaps = 27/295 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N+L +L+++ G S+ TL++YE    QF+ +    T E    + +  +   E + ++  R 
Sbjct: 15  NFLFDLKLD-GRSQKTLKTYEGVIHQFIQWFEETTGETFDPENVTPIDAAEYKQYLMNRS 73

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  ++ ++   +K +  +L K+++  ES    +R +K+    PR L+ K+      
Sbjct: 74  KPA----TVNKTRIALKRYFDWLVKQEMLKESPWSAIRPVKQGRRAPRWLDRKE-----Q 124

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDK 196
             LL    + +    R+ AI+YLL   GLR+ E   L  +++   +   ++   QGKG K
Sbjct: 125 RALLRAVQQGR--KPRDIAIVYLLLHTGLRVEELCLLRLEDVEMSERKGKVIVRQGKGGK 182

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R VPL   VRKA+  + ++ P          LF   R + + P   Q  +R+  +   L
Sbjct: 183 WREVPLNRDVRKALESWLEVRPASSPW-----LFVSTRSERMTPRAVQFVVRKYGQRAEL 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF------RLSTTQIYTNVNSKN 305
               T H LRH+F   L   G  L  I  + GH        ++TT IYT    ++
Sbjct: 238 E-HCTPHVLRHTFCHELAIKGVSLDVIAMLAGHMTADGRPNIATTAIYTTPGDQD 291


>gi|307265141|ref|ZP_07546700.1| tyrosine recombinase XerD [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919763|gb|EFN49978.1| tyrosine recombinase XerD [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 290

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 133/285 (46%), Gaps = 19/285 (6%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           TL+SY  D  QFL +L    E  I    +++ +      ++ K+   +    ++ R+LS 
Sbjct: 23  TLESYNRDINQFLNYLE---EIGINCYNVKKSTILNYLYYLKKKGKSQA---TVSRNLSS 76

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +K+F  YL  +K   E     +   K     P  L  +Q      ++LL           
Sbjct: 77  LKAFYHYLFMKKKIEEDPTYMINTPKVEKKQPTTLTVEQV-----DMLLSLDFGDDEKGL 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A++ LLY  GL++SE +SL  +++      + I  + +K R++P+     +A+  Y 
Sbjct: 132 RDKALIELLYATGLKVSEVISLKLEDVNLSYGYVVI--RSNKERVIPIGSHAIEALKNYI 189

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           +        N +  LF  +RG+ L      + IR+    +      T +TLR SFA H+L
Sbjct: 190 E--KGRKAKNGENTLFLNLRGQKLTRQGCWKIIREYTDKINPGFPVTPNTLRQSFAQHML 247

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            NG D+R++Q +LG+     T + TN+ S      + E+Y++ HP
Sbjct: 248 QNGADIRAVQEMLGY----QTDLNTNLLSLISKSKIKEVYNKFHP 288


>gi|258515456|ref|YP_003191678.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257779161|gb|ACV63055.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 345

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 137/283 (48%), Gaps = 20/283 (7%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE--IRAFISKRRTQKIGDRS 87
           G S  T++SY+     F  +L  Y E  I++   +     +  I+ FI   +       +
Sbjct: 29  GRSSKTIKSYKDSLTVFRRYL--YDECHISVAAFKFADCNQKCIQEFIIYLKDNNNSPGT 86

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL-VDNVLLHTS 146
             + L+ +KS+L +   R I  +S  L++  + +   +P+   EK+ LT      +L   
Sbjct: 87  CNQRLTALKSYLWFAADRDIAVQSVALSISKIPQCK-IPK--KEKETLTEEALAAILQQP 143

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLP 204
             TK +  R+  I+ LLY   +R+ E L LT +++    D   +RI GKG+K RIV + P
Sbjct: 144 PNTK-MGLRDRVIMILLYDSAVRLDELLCLTLKDLSLRTDNPYIRISGKGNKERIVAITP 202

Query: 205 SVRKAILEYYDLC-PFDLNLNIQLPLFR--GIRGKPLNPGVFQRYIRQL-----RRYLGL 256
              + + +Y  +    DLN++  L + R  G+  + ++PG  +R+I+Q       + L +
Sbjct: 203 KTAEHLKQYLSVYHKNDLNMDQYLFITRIKGVTDR-MSPGNVERFIKQYANSAREKCLQI 261

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           PL    H  R + AT L  NG +L  +  ILGH    TT++Y 
Sbjct: 262 PLKVYPHMFRRTRATDLYQNGVELELVSRILGHSSTETTKVYA 304


>gi|304316827|ref|YP_003851972.1| integrase [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778329|gb|ADL68888.1| integrase family protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 327

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 33/307 (10%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE------------EKITIQ 61
           +L+E  N+   +   +  S  T+++YE D   F  F+                   + I 
Sbjct: 14  ILEEFLNYFSTI---KARSPNTVKAYEYDLVLFFRFIKVRKNLSSDSDFDQIDISDVDIS 70

Query: 62  TIRQLSYTEIRA---FISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMR 117
            I  +   ++ A   F++  R+     R+  R ++ ++SF  YL  KRK+ T++  L + 
Sbjct: 71  LIESIDLNDLYAYLSFVTHERSNTPPARA--RKVASLRSFYNYLYAKRKVITKNPALELE 128

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           + K     P  L   +++ L+D++             R+ AI+ L   CGLR+SE  ++ 
Sbjct: 129 SPKLGIRQPVYLTLDESMKLLDSI-------DGPFKERDYAIITLFLNCGLRLSELANIN 181

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
             +I DD+  L + GKG+K R V L  +   AI EY  + P D  +  +  LF   R + 
Sbjct: 182 ISDIKDDK--LTVIGKGNKQRTVYLNDACISAINEYLKVRPHD-GVKDKKALFLSKRLQR 238

Query: 238 LNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTT 295
           ++    Q  +++  +   L     + H LRH+ AT +   G  D+R++Q +LGH  +STT
Sbjct: 239 ISIKTIQYIVKKHLKDANLDGKKYSTHKLRHTAATLMYRYGKVDIRTLQRLLGHSNVSTT 298

Query: 296 QIYTNVN 302
           QIYT+V+
Sbjct: 299 QIYTHVD 305


>gi|87125131|ref|ZP_01080978.1| integron integrase [Synechococcus sp. RS9917]
 gi|86167451|gb|EAQ68711.1| integron integrase [Synechococcus sp. RS9917]
          Length = 323

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 146/311 (46%), Gaps = 61/311 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRS 87
           R  ++ T+ +YE   R+FL F          ++  R++   E+ AF++    + K+   +
Sbjct: 21  RHYARRTVATYEQWLRRFLRFHG--------MRHPREMGSAEVNAFLTHLAVEGKVSAST 72

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++LS +  FL      +      ++  R  ++   LP  L+E +    V  V LH   
Sbjct: 73  QNQALSAL-LFLYRELLERDLELEGVVRARTRRR---LPVVLSEAE----VRAVRLH--- 121

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKG--DKIRIVP--L 202
               ++   + ++ LLYG GLR+ EAL L  +++  ++  L ++ GKG  D++ ++P  L
Sbjct: 122 ----LEGVPALVVGLLYGSGLRLMEALRLRVKDLDFERRELTVRDGKGGKDRMTLLPQSL 177

Query: 203 LPSVRKAILEYYDLCPFDLNLN---IQLPL----------------------------FR 231
           +P +R+ +L    L   DLN     + +P                               
Sbjct: 178 VPELRQHLLVVRQLHRADLNAGWGKVLMPYALARKYPHADREWGWQWVFPQQRRWRDSVS 237

Query: 232 GIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
           G +G+  ++P + Q+ ++Q      +  + + HT RHSFATHLL  G D+R+IQ +LGH 
Sbjct: 238 GQQGRHHIDPALVQKAVKQAVAEAAVTKAASCHTFRHSFATHLLERGQDIRTIQELLGHQ 297

Query: 291 RLSTTQIYTNV 301
            + TT IYT+V
Sbjct: 298 DVCTTMIYTHV 308


>gi|309805934|ref|ZP_07699964.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 03V1-b]
 gi|309807630|ref|ZP_07701574.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
 gi|308167673|gb|EFO69822.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 03V1-b]
 gi|308169127|gb|EFO71201.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
          Length = 204

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 90/177 (50%), Gaps = 26/177 (14%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP------------L 202
           RN A+L L Y  G+R+SE  +L    +  + + + + GKG+K R V             L
Sbjct: 33  RNMALLELFYATGMRVSEIANLKLDQVDFELNLILVHGKGNKDRYVAFGEEAKTALNNYL 92

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           + + +K +L   D     LN N  +   RG+          +  I+ +    G+  S   
Sbjct: 93  VEARKKLLLHKTDYGYVFLNSNGNMITSRGL----------EYIIKNIFLNAGISASVHP 142

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           H LRH+FAT +L+NG DLR++Q +LGH  +STTQIYT+V  ++    + +IY +  P
Sbjct: 143 HMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQH----LCDIYHKYFP 195


>gi|307322976|ref|ZP_07602243.1| integrase family protein [Sinorhizobium meliloti AK83]
 gi|306891378|gb|EFN22297.1| integrase family protein [Sinorhizobium meliloti AK83]
          Length = 292

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 106/228 (46%), Gaps = 28/228 (12%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +K+   S+  ++S ++ F     +R    E  +L     +K   LP  L+  +    +  
Sbjct: 59  KKLAPNSIHIAISALRFFFSVTLERDWVPEEVLLP----RKPQKLPIILSPDEVQQFLGC 114

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRI 199
           VL          D ++ AIL   Y  GLRISEA+ L   +I   +  +R+ QGKG K R 
Sbjct: 115 VL----------DLKHHAILTTCYAAGLRISEAVHLKTTDIDSQRMVVRVEQGKGQKDRY 164

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIR-GKPLNPGVFQRYIRQLRRYLG 255
           V L P + + + +Y+          ++ P   LF G R G P+      +   +      
Sbjct: 165 VMLSPKLLEILRDYW---------RMRRPKEWLFPGDRTGHPITRDAVGQACAKAHDLSR 215

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           L    T H+LRH+FA HLL  G D+R+IQ +LGH  L+TT  Y  + +
Sbjct: 216 LSKPVTPHSLRHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIAT 263


>gi|332884391|gb|EGK04654.1| hypothetical protein HMPREF9456_03396 [Dysgonomonas mossii DSM
           22836]
          Length = 336

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 130/282 (46%), Gaps = 13/282 (4%)

Query: 29  RGLSKLTLQSYECDTRQFLIFL---AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           R LSK T+ SY    R  +I+         EK+T++ I   S      ++ K R  +  +
Sbjct: 23  RNLSKNTISSYSDTFRLLVIYFNDQQSIPPEKLTLKNINDKSVCNYLDWLQKER--RCSN 80

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD-NVLLH 144
            +  + L+ I SF +YL+ +      +   +  +    S+   LN    LT+   + LL 
Sbjct: 81  TTRNQRLAAIHSFFRYLQMQDSKQLLSCQKVMQIPFKKSVQPILNH---LTISQVSSLLR 137

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLL 203
                K  + R+ A+L +LY  G R+ E   L  +N+ ++  ST+ + GKG K R++P++
Sbjct: 138 QPDINKKGERRDIALLSVLYDTGARVQELCDLKVRNVRLEPPSTITLTGKGCKTRLIPIV 197

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL---GLPLST 260
            +  K +  Y +         +  PLF   R + L+ G     +R+    +    +P   
Sbjct: 198 GNTVKLLTNYIEENKLTGTHKLDHPLFYNQRRQALSRGGITHILRKYAHMVKDKNMPEKI 257

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           T H LRHS A HLL  G  +  I+  LGH  + TT+IY  ++
Sbjct: 258 TPHILRHSKAMHLLQAGYTMVVIRDWLGHVSVQTTEIYATLD 299


>gi|148264912|ref|YP_001231618.1| phage integrase family protein [Geobacter uraniireducens Rf4]
 gi|146398412|gb|ABQ27045.1| phage integrase family protein [Geobacter uraniireducens Rf4]
          Length = 279

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 112/239 (46%), Gaps = 22/239 (9%)

Query: 66  LSYTEIRAF-ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           LS  ++R F +   + +K    +    LSGIK F +   +RK +    +  +    KS  
Sbjct: 43  LSEDDVRGFFLHLLKVRKAARSTFTIYLSGIKFFFETTLQRKWS----VFGITKPAKSKR 98

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L+ K+  TL+ ++           + R    L ++Y CGLR+SE   L  ++I   
Sbjct: 99  LPVVLSRKEVRTLLKSI----------KNPRVKMALTIIYACGLRLSEGARLKVKDIDSG 148

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           +  L ++ GKG K R VPL     + +  +Y L  F        P   G     +N    
Sbjct: 149 RKLLWVRDGKGMKDRCVPLPKRPLELLQTHYRL--FGAGSEYLFPSGDG----HINICTI 202

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           Q   R   R   +  + T HTLRHS+ATHLL NG D  +++ ILGH  ++TT IY ++ 
Sbjct: 203 QTAFRVAVRKSDIGKTATVHTLRHSYATHLLENGEDSATLKEILGHSSITTTNIYLHMT 261


>gi|259909803|ref|YP_002650159.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224965425|emb|CAX56957.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 351

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 141/318 (44%), Gaps = 23/318 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI--RAFIS 76
           ++WL +L +  G S  T Q Y    R    FLA+     IT      L+  E   R    
Sbjct: 26  ESWLAHLVVA-GRSARTAQGYGERVR---AFLAWCEPRGITYAPQVSLAVLEAYQRWLQG 81

Query: 77  KRRT---QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEK 132
            RR    Q + +  L R LS ++   ++L KR     S    +   K+   LP +  +E 
Sbjct: 82  YRRADGKQLVVNSQLHR-LSAVRMLFRWLLKRHHILYSPAEQLELPKEERRLPAQVFSEA 140

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ- 191
           +   ++ ++   T         RN AIL LL+  G+R SE   L   ++   +  + ++ 
Sbjct: 141 ETRRVLQSLDAGTP-----PGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVRR 195

Query: 192 GKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQ 249
           GKG K R+VP+  +    +  Y  D+ P          LF   +G  L  G       R 
Sbjct: 196 GKGGKDRVVPVGHTALMWLARYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGRA 255

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           +R    L  +   H  RH+ AT +L NG D R IQ+ILGH +L TTQIYT V   +    
Sbjct: 256 IRSGAHLKKAGACHIFRHTMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGH---- 311

Query: 310 MMEIYDQTHPSITQKDKK 327
           + +++  THP+  ++ +K
Sbjct: 312 LQKVHAHTHPAEKRRTEK 329


>gi|16519918|ref|NP_444038.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
 gi|2497415|sp|P55632|Y4QK_RHISN RecName: Full=Putative integrase/recombinase y4qK
 gi|2182597|gb|AAB92466.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
          Length = 308

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 108/230 (46%), Gaps = 31/230 (13%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +K+   S+  +++ ++ F     +R     + +L +   KK   LP  L+  +    +  
Sbjct: 75  KKLAPNSIHIAIAALRFFFSVTLERDWVP-AEVLPLP--KKPQKLPIILSPDEVQHFLGC 131

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRI 199
           VL          D ++ AIL   Y  GLRISEA+ L P +I   +  +R+ QGKG K R 
Sbjct: 132 VL----------DLKHHAILTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEQGKGQKDRY 181

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIR-GKPLNPGVFQRYIRQLRRY 253
           V L P + + + +Y+           ++P     LF G R G P+      +   +    
Sbjct: 182 VMLSPKLLEILRDYW-----------RMPRPKEWLFPGDRAGHPITRDAVGQACAKAHDL 230

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             L    T H+LRH+FA HLL  G D+R+IQ +LGH  L+TT  Y  + +
Sbjct: 231 SRLSKPVTPHSLRHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIAT 280


>gi|124485609|ref|YP_001030225.1| formylmethanofuran dehydrogenase subunit E-like protein
           [Methanocorpusculum labreanum Z]
 gi|124363150|gb|ABN06958.1| phage integrase family protein [Methanocorpusculum labreanum Z]
          Length = 320

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 105/225 (46%), Gaps = 22/225 (9%)

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  +++   SL++  S + SF  YL  + IT  + +  +   K  +   + L   + +  
Sbjct: 100 RNERQLSPASLRQYDSALSSFYGYLINQDITEANPMTKVDRPKIKDRELKYLKHNEVVAF 159

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++++           + RN+ ++  +Y  G+RISE   L  ++I  ++ T+R++GKG KI
Sbjct: 160 INSIE----------NPRNALLIRTIYATGMRISEICGLLAEHIDFEEETIRVRGKGGKI 209

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RIV         I E+       LN     P+F G  G  ++P   Q         +  P
Sbjct: 210 RIVFCDSDTLNKIREH-------LNGKKSGPVFEGRNGNAISPRTVQHIFN-----IYAP 257

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              T H +RHS+A+ L     +LR +Q  LGH  + TT+IY + +
Sbjct: 258 PGITPHKIRHSYASELYKRSHNLRVVQENLGHNSIQTTEIYIHTD 302


>gi|16519719|ref|NP_443839.1| putative integrase/recombinase of undefined transposable element
           [Sinorhizobium fredii NGR234]
 gi|2497416|sp|P55429|Y4EF_RHISN RecName: Full=Putative integrase/recombinase y4eF
 gi|2182375|gb|AAB91651.1| putative integrase/recombinase of undefined transposable element
           [Sinorhizobium fredii NGR234]
          Length = 251

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 105/225 (46%), Gaps = 21/225 (9%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +K+   S+  +LS ++ F     +R    E  +L +   KK   LP  L+  +    +  
Sbjct: 18  KKLAPGSIHIALSALRFFFNVTLERDWAPE-EVLPLP--KKPQKLPIILSPDEVQHFLGC 74

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRI 199
           V           D ++ AIL   Y  GLRISEA+ L P +I   +  +R++ GKG K R 
Sbjct: 75  V----------ADVKHHAILTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEHGKGQKDRY 124

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPL 258
           V L P + + + +Y+ +         +  LF G R G P+      +   +      L  
Sbjct: 125 VMLSPKLLEILRDYWRM------WRPEAWLFPGDRAGHPITRYAVGQACVKPHDLSRLSK 178

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             T H+LRH+F  HLL  G D+R+IQ +LGH  L+TT  Y  + +
Sbjct: 179 PVTPHSLRHAFVVHLLEAGADVRTIQPLLGHRSLATTAHYLRIAT 223


>gi|159046171|ref|YP_001541843.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|159046203|ref|YP_001541875.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|157913930|gb|ABV95362.1| phage integrase [Dinoroseobacter shibae DFL 12]
 gi|157913962|gb|ABV95394.1| phage integrase [Dinoroseobacter shibae DFL 12]
          Length = 290

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 129/291 (44%), Gaps = 32/291 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           R+ +++++ I +GL   T   Y    R F  FL  ++ +  T +        E+RAF   
Sbjct: 10  RRRFIEDMRI-KGLQPKTQTMYLRAMRDFTGFLG-HSPDSATPE--------ELRAFQLD 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            + + +G  +    L+ +  F      R         +MR  + +  +P  L+ ++   +
Sbjct: 60  MKEKGVGAPTFNNRLTVLSFFYATTCPRPEMKR----HMRYQRAAKKIPVVLSAEEVTRI 115

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
           ++               R  A   + YG GLR SE   L   +I  D+  +RI QGKG K
Sbjct: 116 LEAA--------PGPGLRYRAAFSVAYGGGLRASEVTHLKIGDIDSDRMLIRIDQGKGRK 167

Query: 197 IRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYL 254
            R V L PS+   + +YY +  P          LF G  R  P++   F R       + 
Sbjct: 168 DRHVMLSPSLLVLLRDYYREARPAGW-------LFPGRNRVDPISTRQFNRAFGVACDFA 220

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +    + HTLRHSFATHLL  G D+R IQ +LGH +L TT IYT V  K 
Sbjct: 221 EIKKRVSPHTLRHSFATHLLEGGTDIRVIQVLLGHAKLETTTIYTKVAIKT 271


>gi|330900232|gb|EGH31651.1| Phage integrase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 320

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 133/289 (46%), Gaps = 28/289 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W  NL+  R     T ++Y+ D   F  F+   + ++      R ++ + + A+ ++   
Sbjct: 32  WFANLDNPR-----TRRAYQNDLEDFCGFVGLASADEF-----RVVTRSHVLAWRAQLEH 81

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVD 139
           + +   +++R L+ + S   +L       ESN +   N       P+   NE +   L D
Sbjct: 82  RGLAGATIRRKLAALASLFDHL------LESNAIAGGNPVHGVKRPKIESNEGKTPALGD 135

Query: 140 N---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194
           +    LL    ET     R+ A+L +L   GLR  EA  L   +I D +    L++ GKG
Sbjct: 136 HQAKALLEAPDETTLKGLRDRALLAVLLYHGLRREEAALLQVSDIQDRRGIQHLKVHGKG 195

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL---- 250
            K+R +PL P     I +Y +     L  + ++PLF  +RGK    G+    I  +    
Sbjct: 196 GKVRYLPLHPVAAGRIHQYLESSEHHLT-DRKVPLFIPLRGKLTGAGITANGIYTVVAAY 254

Query: 251 RRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            +  G+ ++    H LR + AT+ L +  D+  +Q+ LGH  +STT+IY
Sbjct: 255 AKMAGIEVAGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303


>gi|29348044|ref|NP_811547.1| putative integrase/recombinase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29339946|gb|AAO77741.1| putative integrase/recombinase [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 330

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 132/284 (46%), Gaps = 22/284 (7%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLS 93
           TL SY     Q+L F+A  T +      I  L+     AF++   T K    ++  + L+
Sbjct: 32  TLTSYRDYYMQYLPFVAKRTGKHADKLLITDLTVERTNAFLNHIETDKGCTIQTRNQRLT 91

Query: 94  GIKSFLKYL--KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD----NVLLHTSH 147
            IKSF+ Y+     +    S +++   +KK        +   A++ +D    + LL+T  
Sbjct: 92  AIKSFVHYVYNNAPEYMEWSRLMSTIPMKKVKVKVIEGSVLPAVSYLDKREMDALLNTPD 151

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKGDKIRIVPLLP 204
                  ++ A+L  LY  G+R SEA SLT  +I+ D ++   +RI GKG+K R  PL  
Sbjct: 152 RQTVQGRKDYAMLLFLYNTGVRASEAASLTIGSIIYDDASCPLVRIYGKGNKSRTCPLWN 211

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLS---- 259
               AI       PF         +F    G P+   G+++   R + +      +    
Sbjct: 212 RTLNAIK------PFMAGRRETERVFLNRYGNPMTRFGIYELLERNVIKATATAPTLAKK 265

Query: 260 -TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             + HTLRH+ A HL  +G D+ +IQS LGH  L+TT IYT V+
Sbjct: 266 RVSPHTLRHTAACHLYESGNDIVTIQSWLGHVSLNTTNIYTEVS 309


>gi|301312479|ref|ZP_07218393.1| tyrosine recombinase XerD [Bacteroides sp. 20_3]
 gi|300829545|gb|EFK60201.1| tyrosine recombinase XerD [Bacteroides sp. 20_3]
          Length = 314

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 130/296 (43%), Gaps = 30/296 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L + + E+ L++ T+ +Y  D    L     Y  E        Q+S   ++ ++    
Sbjct: 15  DFLFHCQYEKNLNEKTIYAYRSD----LYMFNRYIHELYPSVVFEQVSKDMLKTYLQHIS 70

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLV 138
           T K   +++KR L+ +K+   Y          + LN  R L+     P  L        V
Sbjct: 71  TYK--PKTVKRKLASLKALFNYYD----FEHDDFLNPFRKLRIRFKEPYVLPTVMTCNEV 124

Query: 139 DNVLLH----------TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
             +L +          T         R+ A++ LL+  G+R+SE   L+   +   Q+T+
Sbjct: 125 KEILKYLYKLRADNPDTGGYAYKAQTRDIAVVELLFATGIRVSELCELSCDAVDLKQATI 184

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           ++ GKG K R++ +       IL  Y     P           F    G  L+    +  
Sbjct: 185 KVFGKGSKERVIQICSVEVLKILRQYQRLFAPSKC-------FFINRLGNRLSSQSVRLL 237

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           I++ R  +G+    T HT RH+FAT LL    D++ IQ++LGH  ++TTQIYT+VN
Sbjct: 238 IKRCREEIGIGKKITPHTFRHTFATLLLEEDVDIKYIQNLLGHSSITTTQIYTHVN 293


>gi|268609330|ref|ZP_06143057.1| site-specific tyrosine recombinase XerC [Ruminococcus flavefaciens
           FD-1]
          Length = 327

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 161/324 (49%), Gaps = 35/324 (10%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE----- 55
           M   N P+  + E L E   +L ++++ + LS+ T+Q Y  D R FL F+   +      
Sbjct: 1   MNNYNTPD--NPEFLNE---YLVHIKLVQLLSERTIQGYYEDIRLFLRFIYMNSHNIDDS 55

Query: 56  -EKITI-----QTIRQLSYTEIRAFI---SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK 106
            E I I       +R+++ ++I  FI   S  R     D++  R +S ++SF KYL+K  
Sbjct: 56  PENIDISDFPEDDLRKITVSDIYNFIFYVSDERHN--NDKARYRKISSLRSFFKYLEKAA 113

Query: 107 ITTESN---ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
              E +    L++   KKS  LP+ L+  +++ L     L  S        R+  I+ L 
Sbjct: 114 HIIEKDPTKDLDVPVPKKS--LPKFLSLNESMRL-----LQASDNADS--KRDYCIITLF 164

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
             CG+R+SE + +   +I   ++ +R+ GKG+K R++ L  +   A+ +Y  +   +   
Sbjct: 165 LNCGIRLSELVGINISDIDFYENRMRVLGKGNKERMIYLNEACVDALNKYLIIRRDNQKA 224

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLR 281
             +L LF   + K ++    Q+ +       GL     T H LRH+ AT +   G  D+ 
Sbjct: 225 KAELALFISNQNKRISKRRVQQIVENTLTAAGLDGKGITTHKLRHTAATLMYQYGDADVL 284

Query: 282 SIQSILGHFRLSTTQIYTNVNSKN 305
           +++ +LGH  ++TT+IYT+++++N
Sbjct: 285 TLKELLGHASVATTEIYTHLSNEN 308


>gi|42527350|ref|NP_972448.1| DNA integrase [Treponema denticola ATCC 35405]
 gi|41817935|gb|AAS12359.1| DNA integrase [Treponema denticola ATCC 35405]
          Length = 335

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 143/325 (44%), Gaps = 59/325 (18%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N L+ +   +  SK T+++Y     +F+       E K   + ++ LS TEI AF+S+  
Sbjct: 22  NKLEEVITAKHYSKRTMEAYSYWISRFI------RENKN--KNLKTLSDTEINAFVSRLA 73

Query: 80  T-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +K    S  ++L+ +    K +    I T  NI+  +  KK   LP A+  ++    +
Sbjct: 74  VKEKAAASSQNQALAALLFLYKNILGLTIKTPENIVRAKKPKK---LP-AIMTREETAKI 129

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKI 197
            ++L    +           ++ LLYG G+R+ EAL L  Q+I   ++ + +  GKG K 
Sbjct: 130 FSLLPENDY---------GLLIRLLYGTGMRLMEALRLRIQDIDFGKNEITVHCGKGAKD 180

Query: 198 RIV--------PLLPSVRKAILEYYDLC---------PFDLN-----------LNIQLPL 229
           R          PL   + K  L +   C         PF L                 P 
Sbjct: 181 RKTVLPVSLKFPLQKHMEKVRLIHEADCKEGFGSVPLPFALAKKYPNASKAWAWQWVFPQ 240

Query: 230 FRGIRGKP--------LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
            R  R K         ++P V QR + +     G+P     HT RHSFATHLL  G D+R
Sbjct: 241 ARRWRNKETGEQGRHHIDPSVIQRTLHEAVLRSGIPKPIGCHTFRHSFATHLLEAGYDIR 300

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNG 306
           +IQ +LGH  + TT +YT+V ++ G
Sbjct: 301 TIQELLGHSDVKTTMVYTHVLNRGG 325


>gi|327542930|gb|EGF29382.1| Integron integrase [Rhodopirellula baltica WH47]
          Length = 446

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 123/283 (43%), Gaps = 49/283 (17%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           +++ +L   E+R F++     + G  +   +L   KS L +L K  +  E N +      
Sbjct: 158 RSLEELGEVEVRTFLNDLVANESGGVAAS-TLGQAKSALLFLFKETLGRELNFIEHSQAT 216

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K   LP  L        +D V     H    +      +  L+YG GLR  E   L  ++
Sbjct: 217 KPKKLPVVLT-------IDEVKRVRKH----VTGTRRLMFDLMYGSGLRHKECRRLRIKD 265

Query: 181 IMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPF----DLNLN---IQLPLF-- 230
           +  D+ T+ ++ GKG+K R+  L   VR+ ++E  ++C      DL +    + LP    
Sbjct: 266 LQIDEGTILVRNGKGEKDRVTVLPGRVRQEVIEQIEVCRVRHLQDLEMGEGEVFLPDALK 325

Query: 231 -------RGIRGKPLNPGVFQRYIRQLRRYL--------------------GLPLSTTAH 263
                  R  R + L P    R   +  RY                     G+  +   H
Sbjct: 326 RKYPAESRKFRWQWLFPSPRTRMDPRSGRYWRHHVSEEFLSKSFAKALEASGVLKNAVPH 385

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           TLRHSFATHLL  G D+R++Q ++GH  +STT IY +V ++ G
Sbjct: 386 TLRHSFATHLLEGGSDIRTVQELMGHADVSTTMIYLHVMNRPG 428


>gi|317055535|ref|YP_004104002.1| integrase family protein [Ruminococcus albus 7]
 gi|317057168|ref|YP_004105635.1| integrase family protein [Ruminococcus albus 7]
 gi|317133858|ref|YP_004089769.1| integrase family protein [Ruminococcus albus 7]
 gi|319788794|ref|YP_004090109.1| integrase family protein [Ruminococcus albus 7]
 gi|315447804|gb|ADU21368.1| integrase family protein [Ruminococcus albus 7]
 gi|315449437|gb|ADU23001.1| integrase family protein [Ruminococcus albus 7]
 gi|315450320|gb|ADU23883.1| integrase family protein [Ruminococcus albus 7]
 gi|315450661|gb|ADU24223.1| integrase family protein [Ruminococcus albus 7]
          Length = 334

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 90/290 (31%), Positives = 142/290 (48%), Gaps = 43/290 (14%)

Query: 35  TLQSYECDTRQFLIFLAFYTE--EKITIQTIRQLSYTEIRAFIS-KRRTQKIGDRSLKRS 91
           T+ SY  DT  F + L F +E  + I+ +T+ ++    +  F+S     +K G  +    
Sbjct: 27  TVSSYR-DT--FKLLLKFMSESGKSISKKTVDEIDCDVVLKFLSWLSNVRKNGVPTQNVR 83

Query: 92  LSGIKSFLKYLKKRKITTE-----SNILNMRNLKKSNSLPRALNE---KQALTLVDNVLL 143
           L+ IKSF +Y+    I+ E     S IL++   K+   LP  ++    KQ L+ +D+   
Sbjct: 84  LAHIKSFFRYV--MMISPEYSGQCSEILSIPFAKEDKRLPDCMSTDAIKQMLSSIDS--- 138

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-LRIQGKGDKIRIVPL 202
            +S+E      R+ AIL L+Y    R+ E +SL  ++    Q   + + GKG+K R +PL
Sbjct: 139 -SSNE----GLRHLAILSLMYDSACRVQEIISLDVKDFQPGQCCRIYVHGKGNKYRTIPL 193

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYLGLPLSTT 261
           L    K I +Y         L  + P+F    G  L   G+  RYI  +R+Y  L   T 
Sbjct: 194 LGKTEKIISKYIR----QFGLMQESPMFCNRNGDRLTRQGI--RYI--IRKYSKLANDTV 245

Query: 262 A---------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                     H LRHS ATHL+ NG ++ +++  LGH  ++TTQIY + N
Sbjct: 246 PGIITGSVYPHRLRHSKATHLVDNGVNIYNVRDFLGHESVATTQIYLSTN 295


>gi|298388233|ref|ZP_06997754.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14]
 gi|298259008|gb|EFI01911.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14]
          Length = 170

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 78/150 (52%), Gaps = 7/150 (4%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAIL 211
           D R   +  +LY  GLRISE L L P +I + +S +R+ QGKG K R   L   + K + 
Sbjct: 5   DLRFFCMFSILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSRPLMKKLT 64

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           EY  L         ++ LF    G+P    +  + ++   R  G+      H LRHSFAT
Sbjct: 65  EYNRL------YKPKVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFAT 118

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           HLL  G D++ ++ ++GH  + TT+ Y ++
Sbjct: 119 HLLEQGTDIKIVKELMGHNNIKTTERYVHI 148


>gi|32472343|ref|NP_865337.1| integrase/recombinase Y4QK [Rhodopirellula baltica SH 1]
 gi|32443579|emb|CAD73021.1| putative integrase/recombinase Y4QK [Rhodopirellula baltica SH 1]
          Length = 348

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 125/292 (42%), Gaps = 30/292 (10%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G +K T   Y    RQ   F A  + +++  Q +RQ        F+  +  +     SL+
Sbjct: 67  GKAKRTHDGYIRAVRQLSDF-AGCSPDQVNEQHVRQF-------FLHLKNDRNFAYGSLR 118

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
            + SGIK F  +  KR    +  I+ M  L+   +LP  L  +Q   L+ +         
Sbjct: 119 VAFSGIKFFFTHTCKR----DWEIIKMLKLQNITTLPEVLTIEQVHELIGSA-------- 166

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRK 208
                R     + +Y  GLR++EAL L   +I  ++  + +  GKG K R VPL  +  +
Sbjct: 167 --TTQRMFVYFWTVYSLGLRLNEALHLQVSDIDAERGWVHVHRGKGAKDRYVPLPTTTVR 224

Query: 209 AILEYYD-------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            +  Y+        L P D   +            P++    Q  ++Q+ + L      +
Sbjct: 225 LLRNYWASHRHPSFLFPADGRKHDLAKDGVSEATTPMSETAVQGAMKQITKNLRFGKKVS 284

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            HTLRHS+ATHLL  G  L+ IQ  LGH  L TT +Y ++      +   EI
Sbjct: 285 IHTLRHSYATHLLEAGVGLKVIQKYLGHSSLQTTMVYLHLTDTAEANAREEI 336


>gi|326797736|ref|YP_004315555.1| integrase family protein [Sphingobacterium sp. 21]
 gi|326548500|gb|ADZ76885.1| integrase family protein [Sphingobacterium sp. 21]
          Length = 360

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 132/286 (46%), Gaps = 34/286 (11%)

Query: 26  EIERGLSKLTLQSYECDT-RQFLIFLA--FYTEEKITIQTIRQLSYTEIRAFI-SKRRTQ 81
           E++R    L +++Y   T R +++  A   Y  + + I +   L Y  +RA+I     T 
Sbjct: 87  ELQRMKEVLQMKAYSPSTIRTYMVEFAQLLYILKDVPIDS---LGYDRLRAYILYCINTL 143

Query: 82  KIGDRSLKRSLSGIK-SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           KI +  L   L+ IK  F + L K     E     +   KK ++LP+ L++K+   + D 
Sbjct: 144 KISESQLHSRLNAIKFYFEQVLHKPDFFAE-----IPRPKKPSTLPKVLSQKEVKRIFDA 198

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKI 197
           V           + ++  +L L YG GLR+SE ++L   +I  D   L++    GKG K 
Sbjct: 199 VR----------NRKHLLMLQLCYGMGLRVSEVVNLKVSDI--DSGRLQVLIEAGKGKKD 246

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R VPL  +V   + EYY         + +  LF G  G   +    Q   +   +   + 
Sbjct: 247 RYVPLPSAVLDLLREYYK------AYHPKTYLFEGQYGGRYSVRSVQAVFKNAMKAAKVN 300

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
                H LRHS+ATHLL  G D+  IQ +LGH  + TT +Y  V +
Sbjct: 301 KPIGIHGLRHSYATHLLEYGTDMLFIQQLLGHNDIKTTMLYAKVGN 346


>gi|32472034|ref|NP_865028.1| integrase [Rhodopirellula baltica SH 1]
 gi|32397406|emb|CAD72712.1| integrase [Rhodopirellula baltica SH 1]
          Length = 348

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 125/292 (42%), Gaps = 30/292 (10%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G +K T   Y    RQ   F A  + +++  Q +RQ        F+  +  +     SL+
Sbjct: 67  GKAKRTHDGYIRAVRQLSDF-AGCSPDQVNEQHVRQF-------FLHLKNDRNFAYGSLR 118

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
            + SGIK F  +  KR    +  I+ M  L+   +LP  L  +Q   L+ +         
Sbjct: 119 VAFSGIKFFFTHTCKR----DWEIIKMLKLQNITTLPEVLTIEQVHELIGSA-------- 166

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRK 208
                R     + +Y  GLR++EAL L   +I  ++  + +  GKG K R VPL  +  +
Sbjct: 167 --TTQRMFVYFWTVYSLGLRLNEALHLQVSDIDAERGWVHVHRGKGAKDRYVPLPTTTVR 224

Query: 209 AILEYYD-------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            +  Y+        L P D   +            P++    Q  ++Q+ + L      +
Sbjct: 225 LLRNYWASHRHPSFLFPADGRKHDLAKDGVSEATTPMSETAVQGAMKQITKNLRFGKKVS 284

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            HTLRHS+ATHLL  G  L+ IQ  LGH  L TT +Y ++      +   EI
Sbjct: 285 IHTLRHSYATHLLEAGVGLKVIQKYLGHSSLQTTMVYLHLTDTAEANAREEI 336


>gi|149198438|ref|ZP_01875483.1| integron integrase [Lentisphaera araneosa HTCC2155]
 gi|149138444|gb|EDM26852.1| integron integrase [Lentisphaera araneosa HTCC2155]
          Length = 424

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 100/225 (44%), Gaps = 50/225 (22%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           KKS  LP  L+ ++  +L+D  L            +   ++ L+YG GLR +E L L  +
Sbjct: 200 KKSERLPVVLDVEEVRSLIDVTL-----------GQEKLMMKLIYGGGLRKNECLRLRIK 248

Query: 180 NIMDDQSTLRIQ-GKGDKIRIVPLLPSVR----------------------------KAI 210
           ++   +  L I+ GKGDK R   L P +                              A+
Sbjct: 249 DLDFKRGALNIRAGKGDKDRQTLLSPKLEGEVNAHICEIKKLYDKDRTEGVEGVYLPNAL 308

Query: 211 LEYYDLCPFDLNLNIQLPL----------FRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +  Y     D N     P            + IR   L+     R +++  + +G+    
Sbjct: 309 VRKYPSASKDWNWFWLFPSPALSIDPMCKVKTIRRHHLSGTGLSRVLKEKCKEVGIKKRC 368

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           T HTLRHSFATHLL  G DLR+IQ +LGH  +STTQIYT+V S N
Sbjct: 369 TVHTLRHSFATHLLERGTDLRTIQELLGHEDISTTQIYTHVLSLN 413


>gi|328474785|gb|EGF45590.1| site-specific recombinase IntIA [Vibrio parahaemolyticus 10329]
          Length = 320

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 133/322 (41%), Gaps = 65/322 (20%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKRRTQKIGD 85
           + R  +  T++SY    ++F++F       K++    IR LS+  I         +K+  
Sbjct: 14  LTRHYANKTIESYLFWIKRFIVFHQLAHPSKLSEDDVIRFLSHLAI--------DEKVAV 65

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLL 143
           ++   +L+ I    +   K  ++     L+MR  K      LP  L   +    V +   
Sbjct: 66  KTQALALNAISFLYRDFFKTPLS-----LDMRFQKSLTEKKLPVVLTRDEVRRFVQH--- 117

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL 202
                   ID R    + LLYG GLRI E L L  Q+I      +R+ QGKG K R V L
Sbjct: 118 --------IDPRYKLHIQLLYGSGLRIMECLRLRIQDIDYYYGAVRVWQGKGGKNRTVTL 169

Query: 203 ------------------------LPS-----VRKAILEYYDLCPFDLNLNIQLPLFR-- 231
                                   +P      + + +   Y     D N +   P  +  
Sbjct: 170 AKELHEPLKSQMNLARNYYFKDRHVPGYAGVYISEGLRRKYPNAELDFNWHFLFPSNKLS 229

Query: 232 ------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
                  +R   +N    QR +++      +  + T HTLRHSFATHLL +G D+R++Q 
Sbjct: 230 VDKETGQLRRHHINESAIQRAVKRSALDASIEKTVTCHTLRHSFATHLLESGADIRTVQE 289

Query: 286 ILGHFRLSTTQIYTNVNSKNGG 307
            LGH  + TTQIYT+V  +  G
Sbjct: 290 QLGHTDVKTTQIYTHVIERGAG 311


>gi|148265141|ref|YP_001231847.1| phage integrase family protein [Geobacter uraniireducens Rf4]
 gi|146398641|gb|ABQ27274.1| phage integrase family protein [Geobacter uraniireducens Rf4]
          Length = 290

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 127/300 (42%), Gaps = 37/300 (12%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +W +       L+ L   S +C TR   + + FY +    I       Y     F+ +R 
Sbjct: 4   DWYERSMKALQLAGLAEGSQQCYTRAVRMLVLFYDKTPDLISEEELQEY-----FLHRRN 58

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
             K    +L+     I+ F + + +R    + +I      ++S  LP  L++++   ++ 
Sbjct: 59  VDKWSSGTLRICYCAIRFFFEKVLRR----DWHIFGYLKAERSKKLPAVLSQEEIARILS 114

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR 198
            V   T H        N A L+ +Y CGLR+ E L L   +I  D+  + +  GKG K R
Sbjct: 115 CV--RTPH--------NRAYLFTVYSCGLRLQEGLHLEVGDIDSDRMLIHVHRGKGAKDR 164

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI---------RGKPLNPGVFQRYIRQ 249
           +VPL P     + E++       +     P+F  +            PL        ++ 
Sbjct: 165 MVPLPPPTLAVLREHWK------SHKNPRPIFPALGCGDKQGATAESPLAITTVVGAMKD 218

Query: 250 LRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
             R  G+   S   HTLRH +ATHLL  G +LR IQ  LGH  + TT +Y ++  K   D
Sbjct: 219 AVRQAGITKRSVHIHTLRH-YATHLLEEGVNLRVIQRYLGHSSIETTMVYLHLTRKGHDD 277


>gi|50122313|ref|YP_051480.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|49612839|emb|CAG76289.1| probable integrase/recombinase protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 340

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 112/234 (47%), Gaps = 15/234 (6%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEKQALTLVDNVLLHTSHETK 150
           L+ I+   ++L +R     +    M   K    LP + L+E++   ++D      + +T+
Sbjct: 99  LTSIRMLFRWLLQRHHILYNPAEQMTLPKAEKRLPAQILSEEETEAVMD------AQDTE 152

Query: 151 WIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRK 208
            +   RN A+L +L+  GLR SE   L   ++   +  L + QGKG+K R+VP+      
Sbjct: 153 TLTGLRNRAVLEMLWSTGLRRSELAGLMLDDVDVGRGVLVVRQGKGNKDRVVPVGLRALV 212

Query: 209 AILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYLGLPLSTTAHTLR 266
            +  Y D   P     +    LF  I GK L            +R    L  +   H  R
Sbjct: 213 WVQRYLDAVRPRLTTKHDSGALFVTIWGKTLGRATLTILAGSAIREQAHLKKAGACHVFR 272

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           HS AT +L NG D R IQ+ILGH +L TTQIYT V   +    + +++++THP+
Sbjct: 273 HSMATQMLENGADTRYIQAILGHEKLETTQIYTRVAIGH----LKQVHEKTHPA 322


>gi|150388279|ref|YP_001318328.1| phage integrase domain/SAM domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|150389751|ref|YP_001319800.1| phage integrase domain/SAM domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|150392024|ref|YP_001322073.1| phage integrase domain/SAM domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149948141|gb|ABR46669.1| phage integrase domain protein SAM domain protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149949613|gb|ABR48141.1| phage integrase domain protein SAM domain protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149951886|gb|ABR50414.1| phage integrase domain protein SAM domain protein [Alkaliphilus
           metalliredigens QYMF]
          Length = 332

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 129/278 (46%), Gaps = 26/278 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GL+  TL+ Y  +  +F    A+Y       + +  ++  +IR +++      + + ++ 
Sbjct: 68  GLAMRTLEGYSRNLNRF----AYYMR-----KNVEDVTTMDIRMYLASYAKTGVKNGTIG 118

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
                ++ F ++L+  +   +S +  +++LK    + +AL  ++   L D    +     
Sbjct: 119 TETDILRGFFRWLEDEEYINKSPLRKIKSLKPEKRIRKALTNEEMEILRDGCKTY----- 173

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
                R  A+L   Y  G R+ E  ++   +I   +  L++ GKG+K R V +    +  
Sbjct: 174 -----RQKALLEFFYSTGCRLEEVENVKKYDIDWQRLQLKVIGKGNKERTVYINAKAKVH 228

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           I +Y         L+ +  LF   R   K L     +R   ++ +  G+  S   H +RH
Sbjct: 229 IQKY-----LMARLDEEEALFVTERNPVKKLGRRSIEREFDKIEKTSGIKKSIYPHLIRH 283

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           + ATHLL++G DL ++Q+ILGH   S TQIY  +++ N
Sbjct: 284 TMATHLLNSGADLGTVQAILGHEDASITQIYAQISNTN 321


>gi|148994208|ref|ZP_01823501.1| tyrosine recombinase [Streptococcus pneumoniae SP9-BS68]
 gi|168488872|ref|ZP_02713071.1| tyrosine recombinase XerD [Streptococcus pneumoniae SP195]
 gi|147927349|gb|EDK78380.1| tyrosine recombinase [Streptococcus pneumoniae SP9-BS68]
 gi|183572517|gb|EDT93045.1| tyrosine recombinase XerD [Streptococcus pneumoniae SP195]
 gi|332073382|gb|EGI83861.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus
           pneumoniae GA17570]
          Length = 298

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 132/291 (45%), Gaps = 32/291 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L   +  + LS  T+++Y+ D  QF      Y  +           Y  + ++I     
Sbjct: 9   YLDYCKTHKRLSSHTIRAYKNDLMQF------YNSD-----------YDHVESYIEHLTQ 51

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALN----EKQAL 135
             I   +L+R ++ +K F  YLK + I  E+    +R   +    LP+ +     +   +
Sbjct: 52  SNIKTNTLRRKIACMKVFYNYLKYQNIIEENPFNQLRFQFRTEKILPKTIPYDILKNIFI 111

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L   V++  +   K    RN  I+ LL   G+RISE   +  ++I     TL I GKG 
Sbjct: 112 YLEQKVVISKTDYQKQKAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLHIIGKGK 171

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIR-GKPLNPGVFQRYIRQLR 251
           K RI+ L       ILE Y      +N   +     LF G    KPL+    +  ++++ 
Sbjct: 172 KERILFLGDQTTFNILETY------INKTGKESNDFLFPGKHLPKPLSEQSVRLILKRIV 225

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               L  + T H  RHSFAT LL N  D+R IQ ILGH  +S TQIYT+V+
Sbjct: 226 EQNSLSKTITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISVTQIYTHVS 276


>gi|310764975|gb|ADP09925.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 359

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 146/324 (45%), Gaps = 35/324 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI--- 75
           ++WL +L    G S  T+Q Y    R FL +      E   I+   Q+S   + ++    
Sbjct: 26  ESWLSHLAAA-GRSPRTVQGYGERVRAFLAWC-----EPRGIRYAPQVSLVVLESYQRWL 79

Query: 76  -SKRRTQKI-----GDRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSLP- 126
            S RR         G R L   LS ++  L++L KR   +   +++L +   K+   LP 
Sbjct: 80  QSYRRADGRHLVVNGQRHL---LSALRGLLRWLLKRHHILYNPADLLEL--PKEERRLPA 134

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           +  +E +   ++ ++   T         RN AIL LL+  G+R SE   L   ++   + 
Sbjct: 135 QVFSESETRRVLQSLDAGTP-----PGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRG 189

Query: 187 TLRIQ-GKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
            + ++ GKG K R+VP+  +    +  Y  D+ P          LF   +G  L  G   
Sbjct: 190 VVNVRRGKGGKDRVVPVGYAALMWLGRYLQDVRPRLAQRFDSGHLFISHKGTGLAHGTLT 249

Query: 245 RYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
               R +R    L  +   H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V  
Sbjct: 250 AMAGRAIRDGAHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAI 309

Query: 304 KNGGDWMMEIYDQTHPSITQKDKK 327
            +    +  ++ QTHP+  ++  K
Sbjct: 310 GH----LQSVHAQTHPAEKRRTAK 329


>gi|224372317|ref|YP_002606689.1| phage integrase [Nautilia profundicola AmH]
 gi|223589124|gb|ACM92860.1| phage integrase [Nautilia profundicola AmH]
          Length = 269

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 119/241 (49%), Gaps = 34/241 (14%)

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESN---ILNMRNLKKSNSLPRALNEKQALTLV 138
           ++  +++ + +S ++SF ++L+     TE +   I+   ++K   +LP+ ++        
Sbjct: 57  ELNKKTIAKKVSALRSFFEFLE-----TEGHKFKIIGDEHIKVPKTLPKPVS-------- 103

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              + H     K         +  ++  GLRISEA  +T  +I  D   + I+GKG K R
Sbjct: 104 ---MEHIKKALKSATMDEYLAIITIFSLGLRISEAAGITLSDIKGDW--IEIRGKGAKTR 158

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++P+ P ++  I +Y ++ P       +  LF    G PL      RY+ Q R +    +
Sbjct: 159 LLPVHPKLKDFINKYLEIHP------KKEYLFEK-EGVPLGADKI-RYLIQ-RAFKKHGI 209

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             T H LRHSFAT++L NG  +  +  +LGH  +STTQIYT +++       ++ Y + H
Sbjct: 210 HVTPHQLRHSFATYMLQNGARINDVSELLGHEFISTTQIYTKLSN----SLKLQNYLKAH 265

Query: 319 P 319
           P
Sbjct: 266 P 266


>gi|215447156|ref|ZP_03433908.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           T85]
 gi|289759014|ref|ZP_06518392.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T85]
 gi|289714578|gb|EFD78590.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T85]
          Length = 299

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 132/317 (41%), Gaps = 53/317 (16%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L ++ G S  T ++Y  D R    FLA          ++  L+ + +R++++        
Sbjct: 12  LALQCGRSVHTRRAYLGDLRSLFAFLADRGS------SLDALTLSVLRSWLAATAGAGAA 65

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +L R  S +K+F  +  +R +        ++  K   +LP  L + QAL  +      
Sbjct: 66  RTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAM-AAAES 124

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--------------MDDQSTLRI 190
            + +   +  R+  I+ LLY  G+R+SE   L   +I               +  ST   
Sbjct: 125 GAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIEHRPSVGSGARQGQQEAHST--C 182

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            G    +R  P L   R+A++                 L  G RG+ L+       +RQ 
Sbjct: 183 SGSQPPMRCTPGLVDGRRALV----------TAESGHALLLGARGRRLD-------VRQA 225

Query: 251 RRYL--------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           R  +        G P     H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V 
Sbjct: 226 RTAVHQTVAAVDGAP-DMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVA 284

Query: 303 SKNGGDWMMEIYDQTHP 319
                  +  ++++ HP
Sbjct: 285 VAR----LRAVHERAHP 297


>gi|153001869|ref|YP_001367550.1| integron integrase [Shewanella baltica OS185]
 gi|151366487|gb|ABS09487.1| integron integrase [Shewanella baltica OS185]
          Length = 319

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 134/309 (43%), Gaps = 58/309 (18%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RG S  T +SY    + F+ F      E +  + + Q        F++ +R   I  + +
Sbjct: 18  RGYSIRTEKSYLYWIKAFINFHHKRHPETMGTEEVAQF-----LTFLANQRNVAINTQKI 72

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
             +       L YL ++ +  E   L      K   LP  L+  + ++L+ N L      
Sbjct: 73  ALNA------LAYLYQKHLHHELGNLGFCYATKQRYLPTVLSPSE-ISLILNEL------ 119

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR--------- 198
               D R+  I+ LLYG GLR+SE L L  Q+I  +Q++L ++ GKG K R         
Sbjct: 120 ----DGRDRLIIELLYGSGLRVSECLRLRVQDIDIEQASLTVRDGKGHKDRQIILSHKCA 175

Query: 199 ---------------------IVPLLPSV--RK---AILEYYDLCPFDLNLNIQLPLFRG 232
                                I P LP+   RK   A  ++  +  F        P    
Sbjct: 176 IKLTAYINKAMEIQHSDNQQGIGPSLPNALERKYPNAFKQHGWMFIFPSTTTCINPYTGT 235

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +    L+  V ++ +    R + +    T HT RHSFATHLL +G D+RS+Q +LGH  +
Sbjct: 236 LCRHHLHQSVIRKALGNAVRNIKITKRVTCHTFRHSFATHLLQSGSDIRSVQELLGHNDV 295

Query: 293 STTQIYTNV 301
           STTQIYT+V
Sbjct: 296 STTQIYTHV 304


>gi|163855344|ref|YP_001629642.1| tyrosine recombinase xerD [Bordetella petrii DSM 12804]
 gi|163855612|ref|YP_001629910.1| putative integrase/recombinase [Bordetella petrii DSM 12804]
 gi|163259072|emb|CAP41371.1| Tyrosine recombinase xerD [Bordetella petrii]
 gi|163259340|emb|CAP41640.1| putative integrase/recombinase [Bordetella petrii]
          Length = 349

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 137/295 (46%), Gaps = 24/295 (8%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI---SKRR 79
           ++L   RG+S  T+ SY       L F+      KI    I  L + +I+AF+    + R
Sbjct: 20  EHLAAHRGMSANTVASYRDTFSILLRFMEHQAGVKIERICIADLHHKQIQAFLLWLEQDR 79

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKK---RKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              +  R+  + LS I SF +++       I     ILN++  K+ +S    L+ +    
Sbjct: 80  GNSVNTRN--QRLSAITSFFRFVMSIYPEHILLCQQILNIQFKKRQSSTVDYLSIEAV-- 135

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGD 195
               +LL   +  K +  R+  +L +LY  G R+ E  ++   ++ +   +T R+ GKG 
Sbjct: 136 ---ELLLQQPNARKPMGRRDLVLLSVLYDTGARVQELANMNVSDLKLTAPATARLLGKGA 192

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF-RGIRGKPLNPGV---FQRYIRQLR 251
           K+R+VPLL      ++ Y              PLF   +R +    G+    Q+Y R++ 
Sbjct: 193 KVRLVPLLAPTTALLVSYLQEHHGQYLEQKDRPLFCNNVRKRLTRAGISYILQKYAREVS 252

Query: 252 R----YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +     LG  +S   HTLRHS A HLL  G +L  I+ +LGH  + TT+IY   +
Sbjct: 253 QGNPGLLGTKIS--PHTLRHSKAMHLLQAGVNLIYIRDLLGHSDIKTTEIYARAD 305


>gi|300872275|gb|ADK38965.1| IntI4 [Vibrio sp. V37(2010)]
          Length = 293

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 88/188 (46%), Gaps = 38/188 (20%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206
           +D ++   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V     L P +
Sbjct: 95  VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 154

Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233
           ++ I     YYD                        P++   +   P F+         +
Sbjct: 155 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 214

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N  V Q+ +R+  +  G+  + T HTLRHSFATH L  G D+R+   +LGH  + 
Sbjct: 215 RRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHSLEVGADIRTGHELLGHTDVK 274

Query: 294 TTQIYTNV 301
           T Q YT+V
Sbjct: 275 TEQNYTHV 282


>gi|270292983|ref|ZP_06199194.1| putative integrase/recombinase XerD [Streptococcus sp. M143]
 gi|270278962|gb|EFA24808.1| putative integrase/recombinase XerD [Streptococcus sp. M143]
          Length = 298

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 131/294 (44%), Gaps = 38/294 (12%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L   +  + LS  T+++Y+ D  QF      Y  +           Y  + ++I     
Sbjct: 9   YLDYCKTHKRLSSHTIRAYKNDLMQF------YNSD-----------YDNVESYIEHLTQ 51

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALN----EKQAL 135
             I   +L+R ++ +K F  YLK + I  E+    +R   +    LP+ +     +   L
Sbjct: 52  SNIKTNTLRRKIACMKVFYNYLKYQNIIEENPFNQLRFQFRTEKILPKTIPYDVLKSIFL 111

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L   V+L  +   K    RN  I+ LL   G+RISE   +  ++I     TL I GKG 
Sbjct: 112 YLEQRVVLSKTDYQKQHAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLHIIGKGK 171

Query: 196 KIRIVPLLPSVRKAILEYY------DLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIR 248
           K RI+ L       +LE Y      +   F         LF G    KPL+    +  ++
Sbjct: 172 KERILFLGDQKTFNLLETYINKTRNEFNDF---------LFPGKHSLKPLSEQSVRLILK 222

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           ++     L  + T H  RHSFAT LL N  D+R IQ ILGH  +S TQIYT+V+
Sbjct: 223 RIVEQNSLFRTITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISVTQIYTHVS 276


>gi|163855809|ref|YP_001630107.1| putative integrase/recombinase [Bordetella petrii DSM 12804]
 gi|163259537|emb|CAP41838.1| putative integrase/recombinase [Bordetella petrii]
          Length = 336

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 137/303 (45%), Gaps = 38/303 (12%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK--- 77
           +L+ L   +GL   T++SY    R FLIF+A      ++      L Y  ++ F++    
Sbjct: 14  FLEYLPRHKGLQSSTIRSYRDSLRLFLIFVADANRIGVSELAFEHLGYAAVQDFLNNMEV 73

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKR--KITTESNILNMRNLKKSNSLPR----ALNE 131
           +R   I  R+ +  L+ +  F +YL +   ++   S  +    +K+   LP     A +E
Sbjct: 74  KRGNAISTRNQR--LTALHMFYEYLGRTTPEMLPASAKVAAIPMKRC-PLPEMKFLARDE 130

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            +A+       L  +H+   +  R+ A+L LLY  G R+SE   L     +D QS  R++
Sbjct: 131 VEAM-----FALIPAHDR--LSQRDRALLMLLYNTGARVSEVAQLKVGQ-LDLQSPARVR 182

Query: 192 --GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIR 248
             GKG K R  PL     KA+    D  P  L  +   P+F G+  + +   G+++R   
Sbjct: 183 LLGKGSKWRTCPLWSQTAKALQSMLDERPERLPPDA--PVFVGVAQEGMTRFGIYKR--- 237

Query: 249 QLRRYLGL---------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            +R Y  L         P   T H  RH+ A HLL +G ++  I+  LGH  L TT  Y 
Sbjct: 238 -IRHYAKLWEASVTASSPTHVTPHVFRHTTAVHLLESGVEVNVIRGWLGHVNLETTNRYA 296

Query: 300 NVN 302
            + 
Sbjct: 297 EIT 299


>gi|50122323|ref|YP_051490.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|49612849|emb|CAG76299.1| probable integrase/recombinase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 352

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 85/169 (50%), Gaps = 7/169 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213
           RN A+L +L+  GLR SE   L   ++   +  L + QGKG+K R+VP+       +  Y
Sbjct: 158 RNRAVLEMLWSTGLRRSELAGLMLDDVDVGRGVLVVRQGKGNKDRVVPVGLRALVWVQRY 217

Query: 214 YDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYLGLPLSTTAHTLRHSFAT 271
            D   P     +    LF  I GK L          R +R    L  +   H  RHS AT
Sbjct: 218 LDAVRPRLTTRHDSGYLFVTIWGKRLGRATLTILAGRAIRNDAHLKKAGACHVFRHSMAT 277

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
            +L NG D R IQ+ILGH +L TTQIYT V   +    + +++++THP+
Sbjct: 278 QMLENGADTRHIQAILGHEKLETTQIYTRVAIGH----LKQVHEKTHPA 322


>gi|225849231|ref|YP_002729395.1| recombinase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644770|gb|ACN99820.1| recombinase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 297

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 132/290 (45%), Gaps = 48/290 (16%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T+++Y  D  QF+  +          + +  +S ++I  F    ++QK    ++ R L+ 
Sbjct: 21  TIKNYSVDLNQFIKIVGD--------KEVELVSKSDIAKFRMVLQSQKKKSSTIARKLAT 72

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + S  +YL   ++   S I      K S  +P +L+ ++  TL+ N+           + 
Sbjct: 73  LNSLYQYLIDLELVKVSPITKSHRPKISQRIPSSLSNEEIKTLLKNI----------DNL 122

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM--------------------DDQSTLRIQGKG 194
           ++ AI+ LL   GLR SE L++   NI+                    DD + +R+ GKG
Sbjct: 123 QDKAIVVLLLTTGLRSSELLNIKKSNILIERQNQTFSVDKVIEEGLKEDDIAYIRVVGKG 182

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           DK R VP+     + ++EY  L   +  ++ + P+F      P++     R I+ + + +
Sbjct: 183 DKEREVPITGKPLQILVEY--LKEVNHYIDSKTPIF------PISYHTLWRKIKDIGKKI 234

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              L    H LRH+ AT  L++G +LR IQ +LGH    TT  Y  V  K
Sbjct: 235 ATSLH--PHKLRHTAATVALASGAELRVIQELLGHASPITTARYAKVGQK 282


>gi|298388238|ref|ZP_06997757.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14]
 gi|298259004|gb|EFI01909.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14]
          Length = 160

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 75/141 (53%), Gaps = 7/141 (4%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           +LY  GLRISE L L P +I + +S +R+ QGKG K R   L   + K + EY  L    
Sbjct: 4   ILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSKPLMKKLTEYNRLY--- 60

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
                ++ LF    G+P    +  + ++   R  G+      H LRHSFATHLL  G D+
Sbjct: 61  ---KPKVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQGTDI 117

Query: 281 RSIQSILGHFRLSTTQIYTNV 301
           + ++ ++GH  + TT+ Y ++
Sbjct: 118 KIVKELMGHNNIKTTERYVHI 138


>gi|182413037|ref|YP_001818103.1| integrase family protein [Opitutus terrae PB90-1]
 gi|182414797|ref|YP_001819863.1| integrase family protein [Opitutus terrae PB90-1]
 gi|182416164|ref|YP_001821230.1| integrase family protein [Opitutus terrae PB90-1]
 gi|182416190|ref|YP_001821256.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177840251|gb|ACB74503.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177842011|gb|ACB76263.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177843378|gb|ACB77630.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177843404|gb|ACB77656.1| integrase family protein [Opitutus terrae PB90-1]
          Length = 336

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 141/317 (44%), Gaps = 33/317 (10%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M   +LP ++       R  + Q+L  +RGLS  T+ SY    +  L F +  + +++T 
Sbjct: 1   MSAPDLPSLI-------RGFFDQHLVSQRGLSGHTVLSYRDTFKLLLKFASDDSGKRVTE 53

Query: 61  QTIRQLSYTEIRAFI---SKRRTQKIGDRSLKRSLSGIKSFLKYLK---KRKITTESNIL 114
            T+  L+   +  F+      R   I  R+L+  L+ I SF +YL     R +T    I+
Sbjct: 54  LTLADLTAELVHGFLRHLEADRRNGIVTRNLR--LAAIHSFFRYLAIVDPRHLTHAHTII 111

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            +   ++ + + + L + +    V  +       T +   R+ A+L +LY  G+R  E +
Sbjct: 112 AVPFKRRPHRVAQFLEKDE----VQEIFRQIDSRTLF-GQRDDALLRMLYNTGMRAQELV 166

Query: 175 SLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
            L  +++     S + I GKG K R  PL P    A+  Y  L P  +     +PLF  I
Sbjct: 167 DLDVRHVRFTRPSNVLIFGKGRKERTCPLWPETVAALKSY--LQPRSIKFTDAVPLFLNI 224

Query: 234 RGKPLNP-GVFQRYIRQLRRYLG-------LPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
            G  L   GV  RYI   R           L    T HT RH+ A HLL +  DL  I+S
Sbjct: 225 DGNRLTRFGV--RYIVSHRISEAAQRCPTLLARRITPHTWRHTTAMHLLQSNVDLAMIRS 282

Query: 286 ILGHFRLSTTQIYTNVN 302
            LGH  + TT  Y  ++
Sbjct: 283 WLGHASIETTNTYVEID 299


>gi|312131663|ref|YP_003999003.1| integrase family protein [Leadbetterella byssophila DSM 17132]
 gi|311908209|gb|ADQ18650.1| integrase family protein [Leadbetterella byssophila DSM 17132]
          Length = 275

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 132/271 (48%), Gaps = 23/271 (8%)

Query: 33  KLTLQSYECDT-RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           +L  Q Y  +T R +L +   Y +     ++++ +  +EI +F+ K+++ +I     K  
Sbjct: 13  QLIEQRYAPNTIRAYLDYSKLYLQHVQPYESLQDVPLSEIESFV-KQKSDQISISYQKGL 71

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           +  IK     + K+K+  E   L  +  +K  SLP+  ++++   + D            
Sbjct: 72  VGAIKKIHDLVGKQKL--ELKFLYPK--RKFESLPKYFSKEEIKRIFDAT---------- 117

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAI 210
            + ++ AIL ++Y CGLR+S+ ++L   +I      L I+  K  K R V L   + K +
Sbjct: 118 PNVKHKAILMIIYSCGLRVSDLINLKMSDIKTHDKLLSIRSTKNSKDRWVTLPDPLIKIL 177

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
             YY+          +  LF    G   +    Q  +++  +  G+  + T H+LRHSFA
Sbjct: 178 RSYYN------EYQPKNYLFENPDGGQYSERSVQLILKRALKNGGIKTAGTVHSLRHSFA 231

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            HLL +G DL ++QS++GH  + TT+IY  +
Sbjct: 232 IHLLQSGTDLHTVQSLMGHQSIKTTEIYAQM 262


>gi|153000208|ref|YP_001365889.1| integron integrase [Shewanella baltica OS185]
 gi|151364826|gb|ABS07826.1| integron integrase [Shewanella baltica OS185]
          Length = 319

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 134/309 (43%), Gaps = 58/309 (18%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RG S  T +SY    + F+ F      E +  + + Q        F++ +R   I  + +
Sbjct: 18  RGYSIRTEKSYLYWIKAFINFHHKRHPETMGTEEVAQF-----LTFLANQRNVAINTQKI 72

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
             +       L YL ++ +  E   L      K   LP  L+  + ++L+ N L      
Sbjct: 73  ALNA------LAYLYQKHLHHELGNLGFCYATKQRYLPTVLSPSE-ISLILNEL------ 119

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR--------- 198
               D R+  I+ LLYG GLR+SE L L  Q+I  +Q++L ++ GKG K R         
Sbjct: 120 ----DGRDRLIIELLYGSGLRVSECLRLRIQDIDIEQASLTVRDGKGHKDRQTILSHKCA 175

Query: 199 ---------------------IVPLLPSV--RK---AILEYYDLCPFDLNLNIQLPLFRG 232
                                I P LP+   RK   A  ++  +  F        P    
Sbjct: 176 IKLTAYINKAMEIQHRDNQQGIGPSLPNALERKYPNAFKQHGWMFIFPSTTTCINPYTGK 235

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +    L+  V ++ +    R + +    T HT RHSFATHLL +G D+RS+Q +LGH  +
Sbjct: 236 LCRHHLHQSVIRKALGNAVRNIKITKRVTCHTFRHSFATHLLQSGSDIRSVQELLGHNDV 295

Query: 293 STTQIYTNV 301
           STTQIYT+V
Sbjct: 296 STTQIYTHV 304


>gi|320321214|gb|EFW77351.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. glycinea str. B076]
          Length = 320

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 130/289 (44%), Gaps = 28/289 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W  NL+  R     T ++Y+ D   F  F+   + +       RQ++ + + A+ +    
Sbjct: 32  WFANLDNPR-----TRRAYQNDLTDFSSFIGLASADDF-----RQVTRSHVLAWRADLEQ 81

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVD 139
           + +   +++R L+ + S   +L       ++N +   N       PR   NE +   L D
Sbjct: 82  RGLAGATIRRKLAALASLFDHL------LDNNAVAGGNPVHGVKRPRIESNEGKTPALGD 135

Query: 140 N---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194
           +    LL    E+     R+ A+L +L   GLR  EA  L   +I + +    L+I GKG
Sbjct: 136 HQAKALLEAPDESTLKGRRDRAMLAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKG 195

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR----YIRQL 250
            K+R +PL P     I  Y +     L+ + ++PLF  +RGK    GV        +   
Sbjct: 196 GKVRYLPLHPVAAGRIHLYLERSGHHLD-DKKVPLFISLRGKSTGAGVSANGIYTVVEAY 254

Query: 251 RRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            +  G+ +     H LR + AT+ L +  D+  +Q+ LGH  +STT+IY
Sbjct: 255 AKKAGIEVDGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303


>gi|120556113|ref|YP_960464.1| integron integrase [Marinobacter aquaeolei VT8]
 gi|120325962|gb|ABM20277.1| integron integrase [Marinobacter aquaeolei VT8]
          Length = 322

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 114/249 (45%), Gaps = 52/249 (20%)

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           ++L  I    K++ KR+I      L  +  K    +P  L+  +  +++ N         
Sbjct: 71  QALCAIIFVYKHVLKREIEN----LQYKMTKTPRRMPTVLSPDEVASILQN--------- 117

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVR- 207
             +DA    I  LLYGCGLRI+EALSL  ++I +  +S L   GKG K R   +  ++R 
Sbjct: 118 --MDAEYWLITALLYGCGLRINEALSLRVKDIDLKSRSLLVFNGKGRKDRYTLIPGNLRE 175

Query: 208 ---------KAILEY-----YDLCPFDLNLNIQL-PLFRGIRGKPLNPGV---------- 242
                    +A+ E      + L     +L+ +  P  +    + L P V          
Sbjct: 176 NMERQFAHVRAVHESDLADGFGLTSVPASLHKKYGPAMKDFGWQHLFPSVTRCVHPIAGY 235

Query: 243 ----------FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                     + R +RQ     G+    TAHT RH+FAT LL +G D+R++Q ILGH  +
Sbjct: 236 VCRHHLHHSSYSRRLRQAVLATGITKRVTAHTFRHAFATELLRSGSDIRTVQEILGHSDI 295

Query: 293 STTQIYTNV 301
            TT+IYT+V
Sbjct: 296 RTTEIYTHV 304


>gi|302527366|ref|ZP_07279708.1| tyrosine recombinase XerC [Streptomyces sp. AA4]
 gi|302436261|gb|EFL08077.1| tyrosine recombinase XerC [Streptomyces sp. AA4]
          Length = 335

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 9/160 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           R+  +L L    GLR +E  +LTP++++  D +  L + GKG + R +P+ P++ K I +
Sbjct: 141 RDVLVLALGLVAGLRAAEMRALTPRSVVGRDGELRLHVHGKGSRDRSIPVQPALAKLIED 200

Query: 213 YYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQLRRYLGL----PLSTTAHTL 265
           Y   C             PL R   G P+  G  +  ++   R+ GL    P     H L
Sbjct: 201 YQASCRRRFPRQRFPASEPLLRDRAGNPIGRGALEYLVKSCYRWAGLHDRVPTGANLHAL 260

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           RH+FAT L  +G     I S+LGH  L T+Q Y     + 
Sbjct: 261 RHTFATRLAEDGATASEIMSLLGHASLVTSQNYIEATGRE 300


>gi|328947550|ref|YP_004364887.1| integron integrase [Treponema succinifaciens DSM 2489]
 gi|328447874|gb|AEB13590.1| integron integrase [Treponema succinifaciens DSM 2489]
          Length = 410

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 123/255 (48%), Gaps = 51/255 (20%)

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           ++L+ +  + +++K   +   +N+++    KK   +P   + ++   ++ N         
Sbjct: 161 QALAALLFYYRFVKNEPMEKLTNVVHA---KKKTRIPVVFSRQEVSKIIGN--------- 208

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLP 204
             +      I  LLYG GLR++EALSL   ++  D++ + +  GKGDK R  ++P  L+ 
Sbjct: 209 --LTGTKKLIAKLLYGTGLRLNEALSLRILDLDFDRNEIIVRHGKGDKDRHVMIPRTLIC 266

Query: 205 SVRKAILEYYDLCPFDLNL---NIQLP------------------LF----------RGI 233
            ++  I     +   DL     +++LP                  LF           G 
Sbjct: 267 ELKSHIENLRKIHEEDLKAGFGSVKLPQALSDKYQGGSKEFKWQWLFPQKNRWKNPQTGE 326

Query: 234 RGK-PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
            G+  L+  + QR ++Q     G+  + + HT RHSFATHLL NG D+R+IQ +LGH  +
Sbjct: 327 EGRWHLDESLMQRAVKQAILEAGINKNASCHTFRHSFATHLLENGYDIRTIQELLGHSDV 386

Query: 293 STTQIYTNVNSKNGG 307
           STT IYT+V ++  G
Sbjct: 387 STTMIYTHVLNRGAG 401


>gi|32472856|ref|NP_865850.1| integrase [Rhodopirellula baltica SH 1]
 gi|32444093|emb|CAD73535.1| integrase [Rhodopirellula baltica SH 1]
          Length = 436

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 125/292 (42%), Gaps = 30/292 (10%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G +K T   Y    RQ   F A  + +++  Q +RQ        F+  +  +     SL+
Sbjct: 155 GKAKRTHDGYIRAVRQLSDF-AGCSPDQVNEQHVRQF-------FLHLKNDRNFAYGSLR 206

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
            + SGIK F  +  KR    +  I+ M  L+   +LP  L  +Q   L+ +         
Sbjct: 207 VAFSGIKFFFTHTCKR----DWEIIKMLKLQNITTLPEVLTIEQVHELIGSA-------- 254

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRK 208
                R     + +Y  GLR++EAL L   +I  ++  + +  GKG K R VPL  +  +
Sbjct: 255 --TTQRMFVYFWTVYSLGLRLNEALHLQVSDIDAERGWVHVHRGKGAKDRYVPLPTTTVR 312

Query: 209 AILEYYD-------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            +  Y+        L P D   +            P++    Q  ++Q+ + L      +
Sbjct: 313 LLRNYWASHRHPSFLFPADGRKHDLAKDGVSEATTPMSETAVQGAMKQITKNLRFGKKVS 372

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            HTLRHS+ATHLL  G  L+ IQ  LGH  L TT +Y ++      +   EI
Sbjct: 373 IHTLRHSYATHLLEAGVGLKVIQKYLGHSSLQTTMVYLHLTDTAEANAREEI 424


>gi|332526187|ref|ZP_08402322.1| integrase/recombinase [Rubrivivax benzoatilyticus JA2]
 gi|332110027|gb|EGJ10655.1| integrase/recombinase [Rubrivivax benzoatilyticus JA2]
          Length = 297

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 89/178 (50%), Gaps = 39/178 (21%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAIL-----EYYD 215
           LLYG GLRI+EAL L  +++   Q  + ++ GKG K R+V +LP+  +A L       + 
Sbjct: 102 LLYGTGLRITEALQLRVKDVDFAQRAILVRAGKGGKDRVV-MLPAALEAPLRDQLRAVHA 160

Query: 216 LCPFDL---NLNIQLP-------------------LFRG----------IRGKPLNPGVF 243
           +   D       +QLP                     +G          +R   L PG F
Sbjct: 161 VWAEDAAAGRAGVQLPDALERKYPRAGASWAWFWVFPQGRHSADPRSGVVRRHHLVPGSF 220

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           QR   +  +  G+    T HTLRHSFATHLL +G D+R++Q +LGH  ++TT IYT+V
Sbjct: 221 QRAFARALQAAGVAKPATPHTLRHSFATHLLQSGSDIRTVQELLGHADVATTMIYTHV 278


>gi|320321405|gb|EFW77525.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320331161|gb|EFW87128.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330882731|gb|EGH16880.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 320

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 132/290 (45%), Gaps = 30/290 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W  NL+  R     T ++Y+ D   F  F+   + +       RQ++ + + A+ +    
Sbjct: 32  WFANLDNTR-----TRRAYQNDLTDFSAFIGLASADDF-----RQVTRSHVLAWRANLEQ 81

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVD 139
           + +   +++R L+ + S   +L       ESN +   N       P+   NE +   L D
Sbjct: 82  RGLAGATIRRKLAALASLFDHL------LESNAIAGGNPVHGVKRPKIESNEGKTPALGD 135

Query: 140 N---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194
           +    LL    E+     R+ A+L +L   GLR  EA  L   +I + +    L+I GKG
Sbjct: 136 HQAKALLEAPDESTLKGLRDRAMLAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKG 195

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-----GVFQRYIRQ 249
            K+R +PL P     I  Y +     L+ + ++PLF  +RGK         G++   +  
Sbjct: 196 GKVRYLPLHPVAAGRIHWYLERSGHHLD-DKKVPLFISLRGKSTGASISANGIYT-VVEA 253

Query: 250 LRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             +  G+ ++    H LR + AT+ L +  D+  +Q+ LGH  +STT+IY
Sbjct: 254 YTKKAGIEVAGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303


>gi|66047873|ref|YP_237714.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
 gi|63258580|gb|AAY39676.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 317

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 131/288 (45%), Gaps = 26/288 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W  NL+  R     T ++Y+ D   F  F+   + +       RQ++ + + A+ +    
Sbjct: 29  WFANLDNPR-----TRRAYQNDLTDFSSFIVLASADDF-----RQVTRSHVLAWRADLEQ 78

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN---MRNLKKSNSLPRALNEKQALTL 137
           + +   +++R L+ + S   +L +       N ++      ++ +     AL + QA  L
Sbjct: 79  RGLAGATIRRKLAALASLFDHLLENNAVVGGNPVHGVKRPRIESNEGKTPALGDHQAKAL 138

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGD 195
           +D        E+     R+ A+L +L   GLR  EA  L   +I + +    L+I GKG 
Sbjct: 139 LD-----APDESTLKGLRDRAMLAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKGG 193

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL----R 251
           K+R +PL P     I  Y +     L ++ ++PLF  +RGK    GV    I  +     
Sbjct: 194 KVRYLPLHPVAAGRIHMYLERSGHHL-VDKKVPLFISLRGKSTGAGVSANGIYTVVGAYA 252

Query: 252 RYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +  G+ +     H LR + AT+ L +  D+  +Q+ LGH  +STT+IY
Sbjct: 253 KKAGIKVDGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 300


>gi|261746151|gb|ACX94072.1| putative integrase [Acinetobacter genomosp. 3]
          Length = 203

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 104/209 (49%), Gaps = 24/209 (11%)

Query: 101 YLK-KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           YLK   K+ +E   + +   K    LP  L++++ + +V +VL +  H T         +
Sbjct: 2   YLKTASKLNSELKEMKIERPKTPRKLPNVLSKEEIIKIV-SVLKNLKHRT---------V 51

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEY---YD 215
           + L+Y  GLRISEA+ +  ++I  ++  + I+  KG K R   L   + K +LEY   Y 
Sbjct: 52  ISLIYSAGLRISEAVKMEIRDIDFNRKIINIKDAKGKKDRQTALSLKIEKLLLEYMAFYK 111

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
              +         +F G  G+  +    Q+      +  G+    + H+LRHS+ATHL  
Sbjct: 112 PSKY---------IFEGAGGEKYSERSIQQVFTIAVKEAGIKKEVSVHSLRHSYATHLHE 162

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            G D++ IQ +LGH    TT+IYT+V+ K
Sbjct: 163 AGTDIKIIQELLGHESTKTTEIYTHVSRK 191


>gi|323483868|ref|ZP_08089245.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14163]
 gi|323692871|ref|ZP_08107096.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14673]
 gi|323402822|gb|EGA95143.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14163]
 gi|323503046|gb|EGB18883.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14673]
          Length = 282

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 142/291 (48%), Gaps = 20/291 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++ E   +++ L+  + +S+ T+ SY  D    L+ +A Y  E+  I    +++ T + +
Sbjct: 1   MVTEIDIFIKYLQEVKKMSRNTVLSYHRD----LLQMASYMGER-GITEAGKVTKTSLTS 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKIT-TESNILNMRNLKKSNSLPRALNE 131
           +I     +     ++ R L+ +K+F  Y   + KI    + +++   ++K    P  L+ 
Sbjct: 56  YILFMEKEGKATTTISRMLASMKAFFHYEFSEGKIRRNPAELVHAPKIEKKA--PVILSV 113

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQSTLR 189
           ++  +L+      +S E      R+ A+L LLY  G+R+SE  +L LT  N+     T R
Sbjct: 114 EEVTSLLKQPSGRSSKEI-----RDKAMLELLYATGIRVSELTSLKLTDINMNIGFITCR 168

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIR 248
               G K R +P     + A+ +Y +    +L    +   LF    G  ++   F + I+
Sbjct: 169 ---DGGKDRTIPFSRVAKGAMEDYIENARSELTRKKESDWLFVNCNGGQMSRQGFWKIIK 225

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                 G+    T HTLRHSFA HL+  G D++++Q ILGH  ++TTQ+Y 
Sbjct: 226 FYGDKAGIESDITPHTLRHSFAAHLIGGGADMKAVQVILGHSDVATTQMYA 276


>gi|323344611|ref|ZP_08084835.1| tyrosine recombinase XerC [Prevotella oralis ATCC 33269]
 gi|323093881|gb|EFZ36458.1| tyrosine recombinase XerC [Prevotella oralis ATCC 33269]
          Length = 293

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/306 (22%), Positives = 142/306 (46%), Gaps = 23/306 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L  ER  S  T+++Y+ D + F  +      +KI     ++LS+  + + + + 
Sbjct: 4   EEFLDYLRYERNRSAQTVKNYDEDLKAFESYF-----KKIN----KELSWESVDSDVIRG 54

Query: 79  RTQKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             + + D+     S+ R LS ++S  ++   +          +   K++  LP+ L E++
Sbjct: 55  WMESMMDKGNIATSINRRLSALRSLYRFALSKGYVDSDPAYGVVGPKRAKPLPQFLKERE 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
               +D +L  T  +  + + R   IL + Y  G+R+SE + L   ++       ++ GK
Sbjct: 115 ----MDELLGLTVWKDGFKNVRAYTILIMFYETGMRLSELVGLNDSSVDFVNRQFKVSGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            +K R++P    +  ++  Y +L    +       LF    GK +N    +  +++    
Sbjct: 171 RNKQRLIPFGDELDTSLRMYLELRNESVGRKSD-ALFVTSEGKRMNQDQVRYEVKKNLSK 229

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +      T H LRH+FAT +L++  ++ S++ +LGH  + TT++YT+   +     +  +
Sbjct: 230 VCTLKKKTPHVLRHTFATAMLNHDANIESVRKLLGHASVGTTEVYTHTTFEQ----LKRV 285

Query: 314 YDQTHP 319
           Y   HP
Sbjct: 286 YKNAHP 291


>gi|218534740|ref|YP_002424501.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218525889|gb|ACK86472.1| integrase family protein [Methylobacterium chloromethanicum CM4]
          Length = 291

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 74/146 (50%), Gaps = 8/146 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           RN  +L +LYG GLRISE  SL  +++   D+     + GKG K R+V L  +  K +  
Sbjct: 137 RNRVLLTVLYGGGLRISEVCSLRWRDLAPRDEAGQATVFGKGGKTRVVLLSAATWKVLQA 196

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
             +    D       P+FR  +G  L+P    R ++      GLP   +AH LRH+ A+H
Sbjct: 197 LREEALADD------PVFRSRKGGALDPSAVHRIVKAAAARAGLPADVSAHWLRHAHASH 250

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIY 298
            L  G  +  +Q+ LGH  ++TT  Y
Sbjct: 251 ALDRGAPIHLVQATLGHASVATTGRY 276


>gi|213972135|ref|ZP_03400225.1| SAM-like protein [Pseudomonas syringae pv. tomato T1]
 gi|302062047|ref|ZP_07253588.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Pseudomonas syringae pv. tomato K40]
 gi|302131887|ref|ZP_07257877.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213923112|gb|EEB56717.1| SAM-like protein [Pseudomonas syringae pv. tomato T1]
          Length = 320

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 132/289 (45%), Gaps = 28/289 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W  NL+  R     T ++Y+ D   F  F+   + ++      R ++ + + A+ ++   
Sbjct: 32  WFANLDNPR-----TRRAYQNDLEDFCGFVGLASADEF-----RVVTRSHVLAWRAQLEH 81

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVD 139
           + +   +++R L+ + S   +L       ESN +   N       P+   NE +   L D
Sbjct: 82  RGLAGATIRRKLAALASLFDHL------LESNAIAGGNPVHGVKRPKIESNEGKTPALGD 135

Query: 140 N---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194
           +    LL    ET     R+ A+L +L   GLR  EA  L   +I D +    L++ GKG
Sbjct: 136 HQAKALLEAPDETTLKGQRDRALLAVLLYHGLRREEAALLQVSDIQDRRGIQHLKVHGKG 195

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL---- 250
            K+R +P+ P     I +Y +     L  + ++PLF  +RGK    G+    I  +    
Sbjct: 196 GKVRYLPMHPVAAGRIHQYLESSGHHL-ADRKVPLFIPLRGKLTGAGITANGIYTVVAAY 254

Query: 251 RRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            +  G+ +     H LR + AT+ L +  D+  +Q+ LGH  +STT+IY
Sbjct: 255 AKKAGIEVDGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303


>gi|302874512|ref|YP_003843145.1| integrase family protein [Clostridium cellulovorans 743B]
 gi|307690879|ref|ZP_07633325.1| site-specific tyrosine recombinase XerC [Clostridium cellulovorans
           743B]
 gi|302577369|gb|ADL51381.1| integrase family protein [Clostridium cellulovorans 743B]
          Length = 311

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 139/300 (46%), Gaps = 35/300 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFL--------IFLAFYTEEKITIQTIRQLSYTE 70
           + +L  L I +  S+ T+  Y  D   F         I +A     +I ++ I+ ++  +
Sbjct: 11  EQYLGYLSIIKNRSENTILEYRIDLLMFFSYILKSRSITVADSNFAQIDLEFIKSINLND 70

Query: 71  IRAFIS---KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLP 126
           + +FIS   K      G R+  R +  I+ F KYLK +    ++NI   +   K    +P
Sbjct: 71  MYSFISYCQKTLNSSAGTRA--RKIVSIRQFWKYLKTKAHVIDNNIAEELETPKLPKRIP 128

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + LN +++  L+         E K    R+  I+ +   C LR+SE  SL    + +D  
Sbjct: 129 KYLNLEKSFRLL--------MECKK-SIRDHCIITIFLNCALRLSELASLNIDQVNND-- 177

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           TL + GKG+K R + L P+ +KAI   L   +    D N      LF       +     
Sbjct: 178 TLSVVGKGNKERKIFLTPAAKKAINNWLHIRNSINVDTN-----ALFISRNSNRITTRAI 232

Query: 244 QRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTNV 301
           Q  I++     GL   S + H LRH+ AT +   G  D+RS+Q ILGH  ++TT+IYT++
Sbjct: 233 QNIIKKYVLSSGLDSKSISTHKLRHTAATLMYKYGRVDIRSLQQILGHESVATTEIYTHI 292


>gi|291544906|emb|CBL18015.1| Site-specific recombinase XerD [Ruminococcus sp. 18P13]
          Length = 331

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 145/314 (46%), Gaps = 39/314 (12%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE------------KITIQTIRQLS 67
           ++L  L I +G S  T+  Y  D R FL ++ F   E             + I  +RQ++
Sbjct: 15  DYLIFLSIVKGRSPRTVAEYNLDLRLFLKYIKFMKTEHNQPAVEDMDIRDVDITLLRQVT 74

Query: 68  YTEIRAF---ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK-SN 123
             +I  F   +   R  +  DR+  R  S +K F  YL       E N      L    +
Sbjct: 75  LQDIYQFEYYLQDDRQNR--DRARSRKTSAVKGFFSYLTYNMTLLEKNPAEHLELPGVKH 132

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           SLP+ L+ +++L ++ +V   + H       R+  IL L   CG+R+SE + +  Q++  
Sbjct: 133 SLPKFLSLEESLRMLSSV--ESDHP-----QRDYCILVLFLNCGIRLSELVGINVQDVDM 185

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL---CPFDLNLNIQLPLFRGIRGKPLNP 240
            +  LRI GKG+K R++ L  +   AI EY       P + N      LF     + ++ 
Sbjct: 186 YERRLRILGKGNKERMIYLNDACLSAITEYLQTRKNPPTEPN-----ALFLSRNNRRISR 240

Query: 241 GVFQRYIRQLRRYL---GLPLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQ 296
              Q+ +  + +     G  LST  H LRH+ AT +  +G  D  +++ ILGH  + TT+
Sbjct: 241 RRVQQIVESVLKNADLGGKGLST--HKLRHTAATLMYQHGNVDTLTLKEILGHKSIVTTE 298

Query: 297 IYTNVNSKNGGDWM 310
           IYT+++ +   D +
Sbjct: 299 IYTHLSDEQRQDAI 312


>gi|331698493|ref|YP_004334732.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190]
 gi|326953182|gb|AEA26879.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190]
          Length = 310

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 136/318 (42%), Gaps = 20/318 (6%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
             LP  V+  L      +  +L+ ERG S  T+++Y  D    L         ++    +
Sbjct: 9   TELPPTVAGHL----DAFTAHLDRERGRSSHTVRAYRSDLAGLL--------GRLPGDDL 56

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLKKS 122
             L    +R+++++        RS     +           R    +S+    + + +  
Sbjct: 57  AVLDLGLLRSWLAEAHAAGT-SRSTLARRAAAARTFTAWAHRTGLLDSDPGARLDSPRPQ 115

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             LP  L   QA  L+D      + E   +  R+  +L LLY  G+R++E   +   ++ 
Sbjct: 116 RRLPSVLRADQAADLMDAAASGAA-ERDPVALRDQLLLELLYATGVRVAEVCGIDVDDVD 174

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPG 241
               T+R+ GKG++ R V       +A+  +       L      P L  G+RG+ L+P 
Sbjct: 175 QSARTVRVLGKGNRERTVVYGVPAERALRTWLAAGRPALARTGGPPALLLGVRGRRLDPR 234

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           V +  +      +        H LRH+ ATHLL  G DLR +Q +LGH  LSTTQ+YT+V
Sbjct: 235 VARSVVHAAVAAVPGAPDIGPHGLRHAAATHLLDGGADLRYVQELLGHATLSTTQLYTHV 294

Query: 302 NSKNGGDWMMEIYDQTHP 319
                 D +  ++DQ HP
Sbjct: 295 TV----DRLKVVHDQAHP 308


>gi|227544897|ref|ZP_03974946.1| tyrosine recombinase [Lactobacillus reuteri CF48-3A]
 gi|300910076|ref|ZP_07127536.1| integrase/recombinase XerD [Lactobacillus reuteri SD2112]
 gi|227185109|gb|EEI65180.1| tyrosine recombinase [Lactobacillus reuteri CF48-3A]
 gi|300892724|gb|EFK86084.1| integrase/recombinase XerD [Lactobacillus reuteri SD2112]
          Length = 297

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 137/292 (46%), Gaps = 15/292 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E   +L  L+ +R LS  TL SY+ D  Q + +L     E   I   +Q+ +  +   ++
Sbjct: 4   EVAAFLAFLKDKRQLSDNTLMSYQRDLEQTVTYL-----EDRGIDDWQQVDHYLLIDLLN 58

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA---LNEKQ 133
             R Q   + ++ R +S ++ F KY+ +    T  N + M + + + + P A   L EK+
Sbjct: 59  SLRQQGKANSTINRVISSLRQFYKYMIRHHNLT-INPMEMIDHQYTFNQPPAPVILTEKE 117

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                   LL     +  I  R+ A+L ++   G+R+SE ++L    +  D   L++ GK
Sbjct: 118 I-----EQLLAVPDVSTPIGLRDRALLEIMDATGMRVSEVIALDLTALHLDVKLLQLTGK 172

Query: 194 GDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
            ++ R++PL     K +  Y +   P  L  + +  +F    G PL      + +++   
Sbjct: 173 NERERMIPLSQPAVKWLTGYLNRGRPLLLRDDHETRVFLNAHGYPLTRQGIWKKMKEWVS 232

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              +    T  T+R+SFA HL+ NG D++ IQ ILG+  +   Q Y  V+ +
Sbjct: 233 EAKIKKEVTPQTMRYSFAVHLIENGADVQLIQEILGYNAMKALQPYLQVSPQ 284


>gi|289628758|ref|ZP_06461712.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|330870488|gb|EGH05197.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 320

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 131/290 (45%), Gaps = 30/290 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W  NL+  R     T ++Y+ D   F  F+   + +       RQ++ + + A+ +    
Sbjct: 32  WFANLDNPR-----TRRAYQNDLTDFSAFIGLASADDF-----RQVTRSHVLAWRANLEQ 81

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVD 139
           + +   +++R L+ + S   +L       ESN +   N       P+   NE +   L D
Sbjct: 82  RGLAGATIRRKLAALASLFDHL------LESNAIAGGNPVHGVKRPKIESNEGKTPALGD 135

Query: 140 N---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194
           +    LL    E+     R+ A+L +L   GLR  EA  L   +I + +    L+I GKG
Sbjct: 136 HQAKALLEAPDESTLKGLRDRAMLAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKG 195

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-----GVFQRYIRQ 249
            K+R +PL P     I  Y +     L  + ++PLF  +RGK         G++   +  
Sbjct: 196 GKVRYLPLHPVAAGRIHWYLERSGHHLG-DKKVPLFISLRGKSTGASISANGIYT-VVEA 253

Query: 250 LRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             +  G+ ++    H LR + AT+ L +  D+  +Q+ LGH  +STT+IY
Sbjct: 254 YTKKAGIEVAGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303


>gi|237756308|ref|ZP_04584862.1| integrase/recombinase XerD [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691535|gb|EEP60589.1| integrase/recombinase XerD [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 297

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 129/291 (44%), Gaps = 50/291 (17%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T+++Y  D  QF+  +          + I +++  +I  F    + Q     ++ R L+ 
Sbjct: 21  TVKNYRVDFNQFIKIVGD--------KNINEITKADIAKFRMTLQMQNRKSSTIARKLAS 72

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + S  +YL   ++   S I      K S  +P AL+ ++   L+D            +D+
Sbjct: 73  VNSLFQYLMDLELVNSSPITKSHRPKVSQKIPSALSNEEVKKLID-----------ALDS 121

Query: 155 -RNSAILYLLYGCGLRISEALSLTPQNIM--------------------DDQSTLRIQGK 193
            ++ AI+ L    GLR SE LS+   NI+                     D + +R+ GK
Sbjct: 122 IQDKAIVILFLTTGLRSSELLSIKKSNIIVERNGQTFSIDRLIEGEVKEGDIAYIRVVGK 181

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GDK R VP+     + +++Y  L   +  L++   +F      P++  +  R IR + + 
Sbjct: 182 GDKEREVPITGKPLEILVQY--LKSINEFLDVNEYIF------PISYHLLWRKIRNIGKK 233

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           L + L    H LRH+ AT  LS+G +LR IQ +LGH    TT  Y  V  K
Sbjct: 234 LAITLH--PHKLRHTAATMALSSGAELRVIQELLGHASPVTTARYAKVGQK 282


>gi|229096643|ref|ZP_04227614.1| Integrase/recombinase [Bacillus cereus Rock3-29]
 gi|228686849|gb|EEL40756.1| Integrase/recombinase [Bacillus cereus Rock3-29]
          Length = 305

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 144/308 (46%), Gaps = 24/308 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE----EKITIQTIRQLSYTEIRAF 74
           +++L++ E+  GL+  T+QSY     +F ++L    E    E IT Q I+  SY     +
Sbjct: 9   KDYLEDKELS-GLAPRTIQSYGDTLNEFSLWLTTEKEIINIEDITPQVIK--SYL---LY 62

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILNMRNLKKSNSLPRALNEKQ 133
            SK R   +  R+ K  L  +K+F +YL+    I   SN  N     K++   +  +++Q
Sbjct: 63  CSKERGNAVVTRNGK--LQHLKTFFRYLEDEDVIEIRSNPTNKIKPAKTDKTIKVYSDEQ 120

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++       S E      R   ++ +L G G+R+ E +S+   ++     T+ I GK
Sbjct: 121 IKQMLRYYRRMRSRENTLYSYRGHTVIVVLAGTGIRLGELVSMRWDSVDLLNKTITIFGK 180

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLR 251
             K    PL   V + + E+   C       I+LP  +F   RG PL     +    +L 
Sbjct: 181 NRKSLSTPLTDKVARELYEWRLFCE---KYYIKLPAHVFNDHRGNPLTVNAVKLMFTRLS 237

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             +G    TTAH  RH++A++ L  G D+ ++  ++ H ++ TT++Y +      G+ + 
Sbjct: 238 VRMGF--KTTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHA----FGNSLA 291

Query: 312 EIYDQTHP 319
           E  D+ +P
Sbjct: 292 ESNDKYNP 299


>gi|254496761|ref|ZP_05109618.1| phage integrase family integrase/recombinase [Legionella
           drancourtii LLAP12]
 gi|254354018|gb|EET12696.1| phage integrase family integrase/recombinase [Legionella
           drancourtii LLAP12]
          Length = 166

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 76/148 (51%), Gaps = 22/148 (14%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG------DKIRIVPLLPSVRKAILE 212
           I+++L   GLR+SE  SLT Q+I+  Q +LRI GKG       K R+VP+   VR A+LE
Sbjct: 21  IIWILIDTGLRVSELCSLTAQDILWQQKSLRITGKGGPYGKKSKKRVVPMSNRVR-ALLE 79

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +Y    + +N              P+     Q+ ++ +     +    T H LRH+FAT 
Sbjct: 80  HY----YAINERF-----------PVGARQVQKIVKGIANKAKISKQVTPHILRHTFATL 124

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            L  G  L S+Q  LGH RL TT IY N
Sbjct: 125 ALQKGISLASVQKALGHDRLETTAIYLN 152


>gi|186474625|ref|YP_001863596.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198584|gb|ACC76546.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 405

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 148/294 (50%), Gaps = 28/294 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           R  +LQ+L   RG +  T   ++   + FL          +  +T++ L  T++  +I +
Sbjct: 110 RSQYLQHLHELRGFAVSTAAQHDSTLKDFL------RRAVLPDRTLQTLGATDVENYI-R 162

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKSNSLPRALNEKQALT 136
            +++++  ++L+  ++ +++FL+Y + R  IT   + ++     ++   PRAL+ K    
Sbjct: 163 LKSREVTRQTLQHVIAHLRAFLRYCEDRGDITLGLHCIDTPRTYRAELPPRALDWKLVPK 222

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           LV++V  H+   T W   R+ A+L+L+   GLR SE  +LT  +I  +  TL +Q +  K
Sbjct: 223 LVNSVDRHS--RTGW---RDHAVLHLMAYYGLRASEVAALTLSSINWESRTLHVQQR--K 275

Query: 197 IRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLP-LFRGIRGKPLNP----GVFQRYIRQ 249
            R V +LP   + I  L  Y  C          P LF   R  P+ P    GV   +  +
Sbjct: 276 TRSVLVLPLADRTINLLRRYLRCG---RSGSDCPALFLRAR-SPVGPLTHYGVVDIFCTR 331

Query: 250 LRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            R   GLP++ ++++ LRH+FA  LL  G   ++I  ILGH  L +T +Y  ++
Sbjct: 332 AR-LSGLPITNSSSYALRHAFAMRLLDRGVGTKAIGDILGHRSLESTCVYLRLD 384


>gi|319787522|ref|YP_004146997.1| integron integrase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466034|gb|ADV27766.1| integron integrase [Pseudoxanthomonas suwonensis 11-1]
          Length = 335

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 102/224 (45%), Gaps = 48/224 (21%)

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           N+   K+   LP  L+  Q + L++            +  R + +  LLYG GLR+ E  
Sbjct: 109 NVVRAKRPRRLPVVLSRAQVVRLLER-----------LSGREALMAGLLYGSGLRLMECA 157

Query: 175 SLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAIL----EYYDLCPFDLNLN---IQ 226
            L  +++  +++ L I+ GKG K R+  L  ++R+A+L    E   L   DL      + 
Sbjct: 158 RLRVKDVDLERNELTIRDGKGGKDRMTVLPGALREALLRQLAEVRLLHARDLACGLGRVH 217

Query: 227 LP--LFRGIRGKPLNPG---------------------------VFQRYIRQLRRYLGLP 257
           LP  L R        PG                           V Q  +R+  R  G  
Sbjct: 218 LPHALARKYPNAAAEPGWQYVFPATRISVDPRDGVRRRHHIDEKVLQSAVRRAAREAGFD 277

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              T HTLRH FATHLL +G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 278 KPVTPHTLRHCFATHLLESGADIRTVQELLGHKDVATTQIYTHV 321


>gi|13488149|ref|NP_085856.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14028105|dbj|BAB54697.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 299

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 80/151 (52%), Gaps = 8/151 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213
           ++  IL   Y  GLRISEA+ L P+ I   +  LR+ QGKG K R V L   + + + +Y
Sbjct: 126 KHQTILTTCYAAGLRISEAVHLRPEAIDRQRMVLRVDQGKGQKDRYVMLSARLLETLTDY 185

Query: 214 YDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +        +  +  +F G I  +P++    Q    +  R  GL    T H+LRH+FA H
Sbjct: 186 WR------AVRPKTWMFPGTIPNEPISTNAVQNACGKAHRLSGLGKPVTPHSLRHAFACH 239

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           LL  G D+R+IQ +LGH  LSTT  Y  + +
Sbjct: 240 LLEAGTDIRTIQLLLGHRSLSTTSQYLRIAT 270


>gi|302878649|ref|YP_003847213.1| integrase family protein [Gallionella capsiferriformans ES-2]
 gi|302581438|gb|ADL55449.1| integrase family protein [Gallionella capsiferriformans ES-2]
          Length = 298

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 140/295 (47%), Gaps = 27/295 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK- 77
           Q++L +      LS+ TL++Y  D   F       T   +       L+  ++R FI   
Sbjct: 8   QSFLSHCRSAVSLSEHTLRAYTFDLEDFQNHAQHETNLSL-------LNKDDLRKFIRHL 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-RNLKKSNSLPRALNEKQALT 136
           R  +K+ + ++KR ++ +K   +++++  + + +   N+   ++    LPRAL  ++   
Sbjct: 61  REERKLKEITIKRRIACLKLLFRWVQQENMISINPFDNLNERIRLPKRLPRALGSEEIKL 120

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L   + L  + + ++ +        LL   G+R+ E + +  ++++    +L+IQGKG++
Sbjct: 121 LTGAINLEAT-DKEFQEFVTGIATKLLLTTGIRVGELVKIDIEDLVLPDCSLKIQGKGNR 179

Query: 197 IRIVPLL-PSVRKAILEYYDLCPFDLNLNIQLP-------LFRGIRGKPLNPGVFQRYIR 248
            R+V L  P + +AI  Y         L I+L        LF    G P      +  + 
Sbjct: 180 QRLVYLFEPKLNQAIARY---------LTIRLTRATETKKLFITEAGIPFTTQKTRILLG 230

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            L    G+    T H LRH+ AT LL  G D+R +Q +LGH  +STT+IYT+V  
Sbjct: 231 DLASKAGIERRITPHMLRHTTATQLLEAGLDIRYVQKLLGHQSISTTEIYTHVTD 285


>gi|251797061|ref|YP_003011792.1| integrase family protein [Paenibacillus sp. JDR-2]
 gi|247544687|gb|ACT01706.1| integrase family protein [Paenibacillus sp. JDR-2]
          Length = 305

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 119/260 (45%), Gaps = 37/260 (14%)

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-PRAL 129
           I   ISK+R    GDR+  R+LS I+SF   L   ++ T +  + ++  K   +  P  L
Sbjct: 60  ISFLISKQRGA--GDRARNRTLSAIRSFYTALIDFEMATRNPAMEVKKSKTEKNKKPVYL 117

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            E +  + +  +      E ++  ARN AI  L+  CGLR+ E   L   +    + T+ 
Sbjct: 118 EEDELASSLSCI------EGRY-RARNVAIFLLMSYCGLRVGEVHRLNRSDFNPVRGTIE 170

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           + GKG K   +P+ P    A+L       + P+    +     F   +G+ L+       
Sbjct: 171 VFGKGRKWNEIPV-PEELAAVLSEVAQDRITPYKEQED---AFFVSQKGRRLS------- 219

Query: 247 IRQLRRYLGLPLST-------------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           IRQ+++  G                  + H LRH+FAT LL NG D+R ++ +LGH  + 
Sbjct: 220 IRQIQKIAGQTFEAFKSINPHAANKKLSCHKLRHTFATILLKNGVDIRVVKELLGHASIE 279

Query: 294 TTQIYTNVNSKNGGDWMMEI 313
           TT IYT+VN     + M  I
Sbjct: 280 TTMIYTHVNDDQKKEAMATI 299


>gi|253995768|ref|YP_003047832.1| integron integrase [Methylotenera mobilis JLW8]
 gi|253982447|gb|ACT47305.1| integron integrase [Methylotenera mobilis JLW8]
          Length = 321

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 124/284 (43%), Gaps = 58/284 (20%)

Query: 64  RQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           R++   E+ AF+S   T   +   +  ++LS +    + +    +    +++     KK 
Sbjct: 45  REMGGAEVEAFLSHLATHGNVSSSTQNQALSALLFLYREVLGLSLPWMDDVVRA---KKP 101

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             LP  L++++   ++D+           + A +  I  LLYG G+RI E   L  Q+I 
Sbjct: 102 QRLPVVLSKQEVAKILDH-----------MQATHGLIARLLYGTGIRIMECCRLRVQDID 150

Query: 183 DDQSTLRIQ-GKGDKIRIVPLLPSV----------RKAILEY------------------ 213
            D+  L I+ GKG K R+  L  S+          RKA+                     
Sbjct: 151 FDRGELLIRNGKGAKDRVTMLPKSLIEPLKAHLVWRKALFHADEAKGKAEVYLPDALERK 210

Query: 214 -----------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
                      Y  C    +++   P     R   L+  + QR +++     G+    T 
Sbjct: 211 YVNAATSWAWQYVFCSGSYSVD---PRSGRERRHHLDEKLVQRAVKKAVGLAGIDKLATP 267

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           HT RHSFATHLL +G D+R++Q +LGH  +STT IYT+V +K G
Sbjct: 268 HTFRHSFATHLLESGYDIRTVQELLGHSDVSTTMIYTHVLNKGG 311


>gi|253988421|ref|YP_003039777.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253988443|ref|YP_003039799.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253990479|ref|YP_003041835.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211638830|emb|CAR67446.1| probable integrase/recombinase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638952|emb|CAR67567.1| probable integrase/recombinase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779871|emb|CAQ83032.1| putative phage integrase/recombinase [Photorhabdus asymbiotica]
 gi|253779893|emb|CAQ83054.1| Phage integrase [Photorhabdus asymbiotica]
 gi|253781929|emb|CAQ85093.1| phage integrase [Photorhabdus asymbiotica]
          Length = 340

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 93/182 (51%), Gaps = 19/182 (10%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213
           RN A+L  L+  G+R +E ++L   +I   +  + + QGK    R+VP+      A LE 
Sbjct: 149 RNRAVLEALWSTGIRRTELINLRLGDIDRHRGVVVVRQGKNGHDRVVPIGERA-LAWLER 207

Query: 214 Y--DLCP-----FDLNLNIQLPLFRGIRGKPLNPGVF-QRYIRQLRRYLGLPLSTTAHTL 265
           Y  D+ P     +D        +F  +RG PL+     Q     +R    L  + + H  
Sbjct: 208 YLADVRPQLAYRYDSGY-----VFITVRGNPLSRNTLTQMAGHTIREEAKLDKAGSCHVF 262

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           RHS AT +L NG D R IQ+ILGH +L TTQIYT V   +    + E+++QTHP+  +  
Sbjct: 263 RHSMATQMLENGADTRHIQAILGHKKLETTQIYTRVAIGH----LKEVHEQTHPAERKPK 318

Query: 326 KK 327
           K+
Sbjct: 319 KQ 320


>gi|120435311|ref|YP_860997.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|117577461|emb|CAL65930.1| phage integrase family protein [Gramella forsetii KT0803]
          Length = 385

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 106/223 (47%), Gaps = 27/223 (12%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S ++ +S +K + ++  +     E  I  +   KKS  LP  L++++ + L+        
Sbjct: 152 SHRQCISALKHYFEFSDQ----AEFEISELVRPKKSRFLPTVLSKEEIIDLL-------- 199

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPS 205
             T+ +  R   IL L+Y  GLR+ E ++L  ++I +D +  L  Q KG K R V L  S
Sbjct: 200 RLTRNLKHR--CILALIYSSGLRVGELINLHLKDIDIDRKQILIKQAKGRKDRYVMLAES 257

Query: 206 VRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
               +  Y         L    P      G   K  +    + +++   R   +    T 
Sbjct: 258 FLPLLYNY---------LQTYEPKRYFTEGYDNKKYSSSAIRSFLKDSCRRAKISKKVTP 308

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           HTLRHSFATH+L NG DLR IQ +LGH +  TT IYT+V  K+
Sbjct: 309 HTLRHSFATHMLENGTDLRYIQELLGHSKPETTMIYTHVAKKD 351


>gi|218662079|ref|ZP_03518009.1| site-specific tyrosine recombinase XerC [Rhizobium etli IE4771]
          Length = 100

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 46/99 (46%), Positives = 62/99 (62%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N L  I    L+ ER  WL+NL  ER LS+ TL +YE DTRQFL FL  +     T+  I
Sbjct: 2   NELLVIADPRLMAERAAWLENLARERRLSEHTLDAYERDTRQFLTFLTGHLAGPATLSDI 61

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102
           R+L   + RAF++ RR Q  G RSL R+L+G++S L++L
Sbjct: 62  RELRPADFRAFLAARRKQGSGARSLGRNLAGLRSLLRHL 100


>gi|192361592|ref|YP_001983640.1| integrase [Cellvibrio japonicus Ueda107]
 gi|190687757|gb|ACE85435.1| integrase [Cellvibrio japonicus Ueda107]
          Length = 323

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 111/244 (45%), Gaps = 55/244 (22%)

Query: 105 RKITTESNILNMRNLK--KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
           R+I  +   L +R +K  K+  LP  L   +   L+ N           I + +     L
Sbjct: 81  REILHKPLSLELRFVKSQKTRKLPVVLTRDEITALMAN-----------ISSNHYLPAAL 129

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI------LEY-- 213
           +YG GLR+ EA+ L  ++I  D   +R+  GKG K R V L P ++K +      +EY  
Sbjct: 130 MYGSGLRLMEAVRLRTKDIDFDYCCVRVWNGKGGKHRTVTLAPELKKPLTVQIQRVEYLL 189

Query: 214 --------YD-----------------------LCPFDLNLNIQLPLFRGIRGKPLNPGV 242
                   YD                       L P D  L+I  P  + +R   ++   
Sbjct: 190 SKDLLNPTYDGVWLPHALRHKYVSANTSLGWQYLFPSD-RLSID-PENQRVRRHHIDESG 247

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            Q+ IR   +   +    +AHTLRHSFATHLL++G D+R++Q  LGH  + TTQIYT+V 
Sbjct: 248 LQKAIRNASQKANIRKHVSAHTLRHSFATHLLASGADIRTVQDQLGHTDVKTTQIYTHVL 307

Query: 303 SKNG 306
              G
Sbjct: 308 QMGG 311


>gi|257898705|ref|ZP_05678358.1| integrase-recombinase [Enterococcus faecium Com15]
 gi|257836617|gb|EEV61691.1| integrase-recombinase [Enterococcus faecium Com15]
          Length = 313

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 144/294 (48%), Gaps = 28/294 (9%)

Query: 26  EIERGLSKLTLQSYECDTRQFL-IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           E  RG+S+ T++ ++    +FL +F  F  +E+I    I  ++   IR F+  +  +   
Sbjct: 5   EKARGISQKTIKKHQ----KFLKLFFEFLKKEQIYF--IEDVTPKSIRQFMLMKLEEGCA 58

Query: 85  DRSLKRSLSGIKSFLKY-LKKRKITTESN-ILNMRNLKKSNSLPRALNE---KQALTLVD 139
           +  +   L  I+++ KY + +  I  + N  + ++ +K+   + +  N+   K+ L +  
Sbjct: 59  ETYVNSHLRSIRAYFKYCVDEDYIRYDRNPCMRVKWVKERKVIIQTFNDMEIKEMLNVAK 118

Query: 140 NVLL---------HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            +           HT ++TK+ + R+  +L +L   GLRI+E ++L   +I + +  +  
Sbjct: 119 KLTFFKPQKMDKQHTGYQTKFTNQRDYLLLLILVDTGLRINEVMNLKDFHITNKELFVE- 177

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCP--FDLNL--NIQLPLFRGIRGKPLNPGVFQRY 246
            GKG K RIV   P + K  ++Y  +    F+ N   NI   +F    GK  N  + +R 
Sbjct: 178 NGKGKKDRIVHCSPLIYKEYIKYKRVANSFFEYNEIENIDNYVFLTREGKQYNYILAERA 237

Query: 247 IRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           I ++     +   +  + H+ RH FA  L+ NG D+  IQ +LGH  + TT++Y
Sbjct: 238 IIKIGNQCKIRKSIRVSPHSFRHYFAQKLVRNGTDIYRIQKLLGHASIKTTEVY 291


>gi|269955978|ref|YP_003325767.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894]
 gi|269304659|gb|ACZ30209.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894]
          Length = 329

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 134/301 (44%), Gaps = 14/301 (4%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           ++L+ +RG S  T ++Y  D    L +   +    +       L    +R ++  +  + 
Sbjct: 37  KHLDAQRGHSVHTRRAYLADVTGLLRYAVRHGAHGMD-----DLQLPVLRGWLGAQADRG 91

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV- 141
           +   +L R  +  ++FL++     +T       + + K   +LP  L    A  ++D   
Sbjct: 92  LARATLARRGAAARAFLRWAHHTGLTDADASARLASPKVPRTLPTVLTPDAAARMLDTAR 151

Query: 142 --LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              L    + +    R  A   LLYG G+R+ E +++   ++   +  +R+ GKG K R+
Sbjct: 152 DDALAAEGDDRPAALRAWAAAELLYGSGIRVGELVAVDVHDVDVRERLVRVLGKGGKERV 211

Query: 200 VPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP  +P+ R       D  P          L  G RG        +  + +L    G+  
Sbjct: 212 VPFGVPAARALTAWLDDGRPALARAGAGTALLVGDRGGRWGQRQAREAVHRLAARAGVD- 270

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRHS ATHLL  G DLRS+Q +LGH  L+TTQ YT+V+++     + ++Y Q  
Sbjct: 271 DVAPHALRHSAATHLLQGGSDLRSVQEVLGHANLATTQRYTHVDAER----LRQVYTQAF 326

Query: 319 P 319
           P
Sbjct: 327 P 327


>gi|254431901|ref|ZP_05045604.1| integron integrase [Cyanobium sp. PCC 7001]
 gi|197626354|gb|EDY38913.1| integron integrase [Cyanobium sp. PCC 7001]
          Length = 325

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 154/334 (46%), Gaps = 67/334 (20%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           PE     L++  +  LQ     R  ++ T+++YE   R+FL F          ++  R++
Sbjct: 5   PEAKPAGLIQRYREELQT----RHYARRTVKTYELWLRRFLRF--------HNLRHPREM 52

Query: 67  SYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
              E+ +F++      ++   +  ++L+ +    + L  R +  +  ++  RN ++   L
Sbjct: 53  GSAEVNSFLTHLAVDLQVSPSTQNQALAALLFLYRELLDRDLELD-GVVRARNRRR---L 108

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P  L+E +   + D+           ++   + ++ LLYG GLR+ EAL L  +++  ++
Sbjct: 109 PVVLSEAEVRAVRDH-----------LEGDPALVVGLLYGSGLRLMEALRLRVKDLDFER 157

Query: 186 STLRIQ-GKGDKIRIVPLLPSVRKAILEYY----------DLCPFDLNLNIQLPLFR--- 231
             L ++ GKG K R+  LLP    A L+++          DL      + +   L R   
Sbjct: 158 RELSVRDGKGGKDRLT-LLPQSLVADLKHHLLGVRRLHRLDLAAGWGQVLMPHALARKYP 216

Query: 232 -----------------------GIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                                  G +G+  L+P + Q+ +++     G+  + + HT RH
Sbjct: 217 NAAREWAWQWVFPQEHRWHDRTSGTQGRHHLDPSLVQKAVKRAVTAAGVSKAASCHTFRH 276

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFATHLL  G D+R+IQ +LGH  +STT IYT+V
Sbjct: 277 SFATHLLERGQDIRTIQELLGHKDVSTTMIYTHV 310


>gi|256390723|ref|YP_003112287.1| integrase family protein [Catenulispora acidiphila DSM 44928]
 gi|256356949|gb|ACU70446.1| integrase family protein [Catenulispora acidiphila DSM 44928]
          Length = 327

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 98/239 (41%), Gaps = 35/239 (14%)

Query: 112 NILNMRNLKKSNSLPRALNEKQ-ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
            ++ +   K  + LP  L+++Q    L        +H    +  R+ AIL  LY    R+
Sbjct: 91  GLVRLVTPKPRSPLPAVLSQRQMTDALTTAADDAATHPHDPLALRDLAILEFLYATAARV 150

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVP------------LLPSVRKAILEYYDLCP 218
           SE  +L   ++   + T R+ GKG + R VP            L    R A+L       
Sbjct: 151 SEVCALNLDDVDFTRRTARLSGKGGRDRTVPFGVPAERALHAWLAADARGAVLAAARANG 210

Query: 219 FDLNLNIQL------------------PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
                                       +F G RG  ++P V +R +    R       T
Sbjct: 211 ARRAGAAAAAAVGWVGGGGGIQKTETEAVFLGARGSRIDPAVVRRLVHARLRATPNTPDT 270

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
             H  RH+ ATHL+  G DLR +Q +LGH  L+TTQIYT+V ++     +   Y Q+HP
Sbjct: 271 GPHGFRHTAATHLIEGGADLRDVQELLGHATLATTQIYTHVTAER----IKARYAQSHP 325


>gi|91214773|ref|ZP_01251746.1| tyrosine type site-specific recombinase [Psychroflexus torquis ATCC
           700755]
 gi|91187200|gb|EAS73570.1| tyrosine type site-specific recombinase [Psychroflexus torquis ATCC
           700755]
          Length = 379

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 124/275 (45%), Gaps = 30/275 (10%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +G SK T+ +Y+   + F  +    + + +T + I    +  I  +       KI + + 
Sbjct: 105 KGFSKNTVDNYKSSLKPFFKYFENQSLKSVTKEQIEGYVFELISKY-------KISESAQ 157

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
              ++ IK + ++     +       N+   KKS  LP  L+  +   ++++        
Sbjct: 158 NTIINAIKCYYEHT----LGLPREYYNITRPKKSQDLPNILHINEVRRIINSPS------ 207

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVR 207
               + ++  IL+ +YG GLR+ E + L   +I  ++  + I+  KG K R   L   + 
Sbjct: 208 ----NLKHKTILHTIYGAGLRVGELIRLRVVDIRSEEGYIFIKDSKGKKDRHTVLSKHLL 263

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-YIRQLRRYLGLPLSTTAHTLR 266
           + + EYY +            LF G  G   +    Q  Y + ++   G P ST  HTLR
Sbjct: 264 ELLREYYKI------YKPAYWLFEGQTGGQYSSTSIQSIYRKAVKETNGNPWST-PHTLR 316

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           HSFATHL+  G  LR IQ+ LGH    TT+IYT V
Sbjct: 317 HSFATHLMERGTSLRHIQAALGHNSSKTTEIYTRV 351


>gi|332994570|gb|AEF04625.1| integrase [Alteromonas sp. SN2]
          Length = 322

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 83/178 (46%), Gaps = 38/178 (21%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLL----------------- 203
           LLYG GLR+ EA+ L  ++I  D + +RI  GKG K R+V L                  
Sbjct: 128 LLYGSGLRLMEAVRLRVKDIDFDYNAIRIWDGKGGKHRVVTLASELKPGLNRQISVVESY 187

Query: 204 -------PSVRKAILEY-----YDLCPFDLNLNIQLPLFR--------GIRGKPLNPGVF 243
                  PS +   L +     Y   P +L  +   P  R          R   ++    
Sbjct: 188 LIADLDNPSYQGVYLPHRLRVKYQNAPKELGWHYLFPSARLSVDPENGKTRRHHIDESSI 247

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           Q+ IR      GL    T HTLRHSFATHLL +G D+R++Q+ LGH  + TTQIYT+V
Sbjct: 248 QKAIRITASACGLKKKVTPHTLRHSFATHLLQSGADIRTVQTQLGHSDVKTTQIYTHV 305


>gi|332076314|gb|EGI86780.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus
           pneumoniae GA41301]
          Length = 298

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 131/287 (45%), Gaps = 24/287 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L   +  + LS  T+++Y+ D  QF      Y  +           Y  + ++I K   
Sbjct: 9   YLDYCKTHKRLSSHTIRAYKNDLMQF------YNSD-----------YDNVESYIEKLTR 51

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALN----EKQAL 135
             I   +L+R ++ +K F  YLK + I  E+    +R   +    LP+ +     +   +
Sbjct: 52  SNIKTNTLRRKIACMKVFYNYLKYQNIIEENPFNQLRFQFRTEKVLPKTIPYDILKSIFI 111

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L   V++  +   K    RN  I+ LL   G+RISE   +  ++I     TL I GKG 
Sbjct: 112 YLEQKVIVSKTDYQKQHAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLHIIGKGK 171

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RI+ L       +LE Y     + + +   P    +  KPL+    +  I+++     
Sbjct: 172 KERILFLGDQKTFNLLETYINKTRNESNDFLFPGKHSL--KPLSEQSVRLVIKRIVEQNN 229

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              + T H  RHSFAT LL +  D+R IQ ILGH  +S TQIYT+V+
Sbjct: 230 FSRTITPHMFRHSFATMLLDSDVDIRYIQQILGHSSISITQIYTHVS 276


>gi|92116456|ref|YP_576185.1| phage integrase [Nitrobacter hamburgensis X14]
 gi|91799350|gb|ABE61725.1| phage integrase [Nitrobacter hamburgensis X14]
          Length = 289

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 109/232 (46%), Gaps = 38/232 (16%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +G  +  +++S ++ F K    R    E        +++ + LP  L+ ++   L+D V 
Sbjct: 65  VGVPTANQTVSTLRFFFKVTLGRADLVERTAF----VREPSKLPVVLSPEEVACLLDAV- 119

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVP 201
                       +  A L + YG GLR+SE ++L   NI   +  +R+ QGKG + R V 
Sbjct: 120 ---------PALKYKAALSVAYGAGLRVSEVVALKVGNIDSKRMIIRVEQGKGREYRYVM 170

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-------- 253
           L P + + +  +Y           Q  LF G R +     V Q   RQL R         
Sbjct: 171 LSPHLLELLRAWYKAA------RPQGWLFPG-RDR-----VRQMTTRQLNRACHAAADMA 218

Query: 254 -LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            +G P+S   HTLRHSFATHLL    D+R IQ +LGH +L TT +Y  V +K
Sbjct: 219 EIGKPVSM--HTLRHSFATHLLEQNIDIRVIQVLLGHAKLDTTALYARVATK 268


>gi|332297767|ref|YP_004439689.1| integron integrase [Treponema brennaborense DSM 12168]
 gi|332180870|gb|AEE16558.1| integron integrase [Treponema brennaborense DSM 12168]
          Length = 398

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 128/277 (46%), Gaps = 52/277 (18%)

Query: 66  LSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           LS TEI  F+++  T+K +   +  ++L+ +  + +Y+K    T   N+ ++   KK+  
Sbjct: 124 LSQTEINLFLTELVTEKNVSASTQNQALAALLFYFRYIKG---TEPCNLASVIRAKKTVH 180

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           +P   ++ +   + D            +      I  LLYG G+R+SE L L  Q+I   
Sbjct: 181 IPVVFSKDEVRAIFDQ-----------LSDEKLLIAQLLYGTGMRLSECLCLRIQDIDFA 229

Query: 185 QSTLRIQ-GKGDKIR--IVP--LLPSVRKAILEYYDLCPFDLNLN---IQLPLF------ 230
            + + I+ GKG K R  ++P  L   +R  I+    L   D+      + LP        
Sbjct: 230 HNMIIIRNGKGAKDRRTMLPHILEKKIRAHIVSVKQLHQADIADGWGVVTLPFALRKKYS 289

Query: 231 ----------------------RGIRGK-PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                                  G++G+  ++  + +R +++  R  G+      HT RH
Sbjct: 290 GASADFAWQWVFPQKNRWKNTDTGMQGRYHIDASIMERAVQKAVRDAGIYKRGNCHTFRH 349

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           SFATHLL NG D+R++Q +LGH  + TT IYT+V +K
Sbjct: 350 SFATHLLENGYDIRTVQELLGHSDVKTTMIYTHVLNK 386


>gi|228964325|ref|ZP_04125444.1| Integrase [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228795422|gb|EEM42910.1| Integrase [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 376

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 140/293 (47%), Gaps = 26/293 (8%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTE--EKIT-----IQTIRQLSYTEIRAFISKRRTQK 82
           GL+K TL   E     FL+F  +  E  E +T       TIR+  Y      I  +    
Sbjct: 79  GLAKRTL---ENKKGYFLVFHRYLEERHEDVTPNTLDTNTIREFLYYLKNDHIKHKNNHC 135

Query: 83  IGDR--SLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           I ++  S+  S+S I + +K+++       E   + +    K  SL  A +  +AL+ VD
Sbjct: 136 IKEKYKSIGVSVSYINTIMKHMRAFYNFLVEEEYVQLNPFTKIKSLKEAQDNIEALS-VD 194

Query: 140 NV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KG 194
            +  LL   ++  +   R+  ++ LL   G+RISEAL+L  +++    + + ++G   K 
Sbjct: 195 QLKTLLKQPNQRTYAGFRDYVLMMLLADTGMRISEALNLQQEDLDFKTNIIELKGTNTKN 254

Query: 195 DKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            + R VP+     K + E   ++  FD      L +F  + G  ++P  F++ ++     
Sbjct: 255 RQTRYVPISQKTSKLLRELLVEIEEFD-----TLHIFATVYGNAIDPARFRQRLKMYGHN 309

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            G+  +  + HT RH+FA + L N GD+ ++Q ILGH  +   + Y N+ SK+
Sbjct: 310 SGIKGVRVSPHTFRHTFAKYYLLNNGDVMTLQKILGHSSIEMVRKYINMTSKD 362


>gi|313148282|ref|ZP_07810475.1| phage integrase [Bacteroides fragilis 3_1_12]
 gi|313137049|gb|EFR54409.1| phage integrase [Bacteroides fragilis 3_1_12]
          Length = 413

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 130/265 (49%), Gaps = 19/265 (7%)

Query: 53  YTEEKITIQTIRQLSYTEIRA-----FISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRK 106
           Y++ K  +QT++  S  +I       +I KR  +     R++  +++ ++ F KY +++ 
Sbjct: 143 YSQLKTMMQTLKVDSLEDITPSILDNYICKRHDEDGCNRRTIAATVTILRGFFKYAEEKG 202

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVD-NV---LLHTSHETKWIDARNSAILYL 162
           +     + +++        PR    +   + V  N+   +L +  +T  I  R+ AIL L
Sbjct: 203 LCNPGLVYSLKA-------PRVYAHENLPSFVPYNIVQQILQSKKDTAGIGVRDYAILLL 255

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           L   GLR SE  ++  ++I     TL ++  K  + +++PLLP V  AI+ Y     F+ 
Sbjct: 256 LSVYGLRCSEVTNMKLKDIDWRNETLYLRRAKNCRPQVLPLLPIVGNAIVRYIKEVRFNK 315

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-HTLRHSFATHLLSNGGDL 280
           +    L L +    + L+       +++  +  GL L     H+LRH+ ATHL++ G  L
Sbjct: 316 SKKEYLFLCKRAPHEQLSTSTIYNLVKKELKDKGLELRHYGPHSLRHTCATHLINTGHSL 375

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKN 305
           + I  +LGH  L TT+IY  V+ KN
Sbjct: 376 KEIADLLGHVGLDTTRIYAKVDIKN 400


>gi|283479906|emb|CAY75822.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 351

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 142/324 (43%), Gaps = 35/324 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++WL +L +  G S  T+Q Y    R FL +      E   I    Q+S   + A+    
Sbjct: 26  ESWLAHLVVA-GRSPRTVQGYRERVRAFLAWC-----EPRGITXAPQVSLAVLEAYQRWL 79

Query: 79  RTQKIGD------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNE 131
           +  +  D       S    L+ I+   ++L +R +   +    +   K+   LP +  +E
Sbjct: 80  QGYRRADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFSE 139

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            +   ++ ++   T         RN AIL LL+  G+R SE   L   ++   +  + ++
Sbjct: 140 AETRRVLQSLDAGTP-----PGXRNRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVR 194

Query: 192 -GKGDKIRIVPLLPSVRKAILEYY-DLCP-----FDLNLNIQLPLFRGIRGKPLNPGVFQ 244
            GKG K R+VP+  +    +  Y  D+ P     FD        LF   +G  L  G   
Sbjct: 195 RGKGGKDRVVPVGHTALMWLGRYLKDVRPRLAQRFDSGX-----LFISHKGTGLAHGTLT 249

Query: 245 RYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
               R +R    L  +   H  RH  AT +L NG D R IQ+ILGH +L TTQIYT V  
Sbjct: 250 AMAGRAIREGAHLKXAGACHIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVAI 309

Query: 304 KNGGDWMMEIYDQTHPSITQKDKK 327
            +    + +++  THP+  ++ +K
Sbjct: 310 GH----LQKVHAHTHPAEKRRTEK 329


>gi|313148284|ref|ZP_07810477.1| phage integrase [Bacteroides fragilis 3_1_12]
 gi|313137051|gb|EFR54411.1| phage integrase [Bacteroides fragilis 3_1_12]
          Length = 337

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 135/291 (46%), Gaps = 31/291 (10%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTE---EKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           R LS  TL+SY    R  + F+A   +   +KI +  I      +    + + R+  I  
Sbjct: 25  RNLSANTLKSYRDAIRLLMPFVAKCVKKEVDKILLADITDARVVDFLDSLERNRSCSIKT 84

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD----NV 141
           R+L+  L+ + SF KY+    +    +I   RN++    +P    E+  +T ++    N 
Sbjct: 85  RNLR--LAAVCSFAKYIS---VNCPEHIEWSRNIR---IIPVKKTERTLITYLEKEEMNA 136

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ----STLRIQGKGDKI 197
           LL    +      R+ A+L  LY  G R  EA +L  +++   +    + + I GKG+K 
Sbjct: 137 LLDAPDKNTSQGWRDYALLLFLYNTGARADEAATLLIRDLSLPKRKGLAVVSITGKGNKT 196

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQ---RYIRQLRRY 253
           R  PL    R A      L     N      +F    G+P+   G+++   RY  +++  
Sbjct: 197 RRCPLWQHTRDA------LSSIIKNRTKDEYVFLNRFGQPITRFGIYEMVTRYAEKIKEL 250

Query: 254 LGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +        + HT+RH+ ATHLL +G D+ +I++ LGH  ++TT IY  VN
Sbjct: 251 IPTIKKKRVSPHTIRHTTATHLLQSGVDINTIRAWLGHVSINTTNIYAEVN 301


>gi|308070088|ref|YP_003871693.1| integrase/recombinase y4qK [Paenibacillus polymyxa E681]
 gi|305859367|gb|ADM71155.1| Putative integrase/recombinase y4qK [Paenibacillus polymyxa E681]
          Length = 358

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 133/290 (45%), Gaps = 43/290 (14%)

Query: 17  ERQNW-------LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ER  W       +++  + R  S  T+++Y   T +F   L   TE  I    +++ +  
Sbjct: 96  ERGEWNPDQRQEMRDALVARSYSSKTIKAYISQTERFFAGLQG-TEASINDAVVQKYALV 154

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +   +S           + +++S +K + +++ K+  +      +    KK + LP  L
Sbjct: 155 LLEKGLS--------HAYVNQAISALKFYFRHVLKQPKSA-----DYVRPKKESKLPDVL 201

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  + + L+  V           + ++ AILYL Y  GLR+SE + L  ++   ++  L+
Sbjct: 202 SLNEVMHLLKAVK----------NPKHKAILYLTYTSGLRVSEVVRLRLEDCDRERKVLK 251

Query: 190 I-QGKGDKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIR-GKPLNPGVFQR 245
           + QGKG K R   LL     A++E Y     P D        LF G R G+ L     Q+
Sbjct: 252 VRQGKGRKDRQT-LLSEAAFAVVEQYRGVEQPADW-------LFPGQREGRHLTERSAQK 303

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
              +     G+    + H+LRHSFATHLL NG DLR IQ +LGH  + TT
Sbjct: 304 VFEKALAEAGIRKQVSIHSLRHSFATHLLENGIDLRYIQELLGHQSVRTT 353


>gi|255010479|ref|ZP_05282605.1| phage integrase [Bacteroides fragilis 3_1_12]
          Length = 338

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 135/291 (46%), Gaps = 31/291 (10%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTE---EKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           R LS  TL+SY    R  + F+A   +   +KI +  I      +    + + R+  I  
Sbjct: 26  RNLSANTLKSYRDAIRLLMPFVAKCVKKEVDKILLADITDARVVDFLDSLERNRSCSIKT 85

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD----NV 141
           R+L+  L+ + SF KY+    +    +I   RN++    +P    E+  +T ++    N 
Sbjct: 86  RNLR--LAAVCSFAKYIS---VNCPEHIEWSRNIR---IIPVKKTERTLITYLEKEEMNA 137

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ----STLRIQGKGDKI 197
           LL    +      R+ A+L  LY  G R  EA +L  +++   +    + + I GKG+K 
Sbjct: 138 LLDAPDKNTSQGWRDYALLLFLYNTGARADEAATLLIRDLSLPKRKGLAVVSITGKGNKT 197

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQ---RYIRQLRRY 253
           R  PL    R A      L     N      +F    G+P+   G+++   RY  +++  
Sbjct: 198 RRCPLWQHTRDA------LSSIIKNRTKDEYVFLNRFGQPITRFGIYEMVTRYAEKIKEL 251

Query: 254 LGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +        + HT+RH+ ATHLL +G D+ +I++ LGH  ++TT IY  VN
Sbjct: 252 IPTIKKKRVSPHTIRHTTATHLLQSGVDINTIRAWLGHVSINTTNIYAEVN 302


>gi|332521448|ref|ZP_08397902.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
 gi|332042847|gb|EGI79046.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
          Length = 279

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 83/153 (54%), Gaps = 7/153 (4%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAIL 211
           + ++ A+L  +Y  GLR  E +++  ++I  D++ + I+ GKG K R++PL  S+R    
Sbjct: 121 NIKHKAMLTAIYALGLRSGELINIKIEDINSDRNQIFIRSGKGRKDRVLPLPNSLRVLFR 180

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           EYY      L    +  LF G  G    P   ++  +      G+    T H+LRH++AT
Sbjct: 181 EYY------LQYRPKNYLFCGRNGDKYAPESLRKVFKMAVFKAGINKQITLHSLRHAYAT 234

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           HL+  G D+R I+ +LGH  + TT IYT+V  K
Sbjct: 235 HLMDRGTDVRIIKELLGHSSIKTTLIYTHVTQK 267


>gi|298249757|ref|ZP_06973561.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297547761|gb|EFH81628.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 297

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 88/167 (52%), Gaps = 17/167 (10%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGDKIRIVPLLPSVRKA 209
           + RN A L L+Y  GLR+SE +SL  +NI   +S   TL + GKG++ R VP+ PS    
Sbjct: 128 NPRNHATLRLMYHAGLRVSEIVSLKWENIHKTKSGGATLDVWGKGEEQRYVPISPS---- 183

Query: 210 ILEYYDLCPFDLNLNIQLPL------FRGIRGK----PLNPGVFQRYIRQLRRYLGLPLS 259
           +LE  +  P  L L  +  +      F+G + K    PL+     R +++  + +G+  +
Sbjct: 184 MLEELEALPGRLPLLTRSTVGNDRYVFQGRKSKGGSIPLDTRHVHRIVQEAAKRVGIEDN 243

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
            + H  RH+ A+H L NG  +  +Q  LGH  L+TT  Y +V +  G
Sbjct: 244 VSPHWFRHANASHSLDNGAPISVVQQSLGHKSLATTMKYLHVKADTG 290


>gi|327474308|gb|EGF19715.1| integrase/recombinase XerD [Streptococcus sanguinis SK408]
          Length = 298

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 132/287 (45%), Gaps = 24/287 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L   +  + LS  T+++Y+ D  QF      Y  +           Y  + ++I +   
Sbjct: 9   YLDFCKTHKRLSSHTIRAYKNDLMQF------YNSD-----------YDNVESYIEQLTQ 51

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALN----EKQAL 135
             I   +L+R ++ +K F  YLK + I  E+    +R   +    LP+ +     +   +
Sbjct: 52  SNIKTNTLRRKIACMKVFYNYLKYQNIIEENPFNQLRFQFRTEKVLPKTIPYDILKSIFI 111

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L   V++  +   K    RN  I+ LL   G+RISE   +  ++I     TL+I GKG 
Sbjct: 112 YLEQKVIVSKTDYQKQHAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLQIIGKGK 171

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RI+ L       +LE Y     + + +   P    +  KPL+    +  I+++     
Sbjct: 172 KERILFLGDQTTFNLLETYINKTRNESNDFLFPGKHSL--KPLSEQSVRLVIKRIVEQNN 229

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              + T H  RHSFAT LL +  D+R IQ ILGH  +S TQIYT+V+
Sbjct: 230 FSRTITPHMFRHSFATMLLDSDVDIRYIQQILGHSSISITQIYTHVS 276


>gi|255010477|ref|ZP_05282603.1| site-specific recombinase, phage integrase family protein
           [Bacteroides fragilis 3_1_12]
          Length = 537

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 130/265 (49%), Gaps = 19/265 (7%)

Query: 53  YTEEKITIQTIRQLSYTEIRA-----FISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRK 106
           Y++ K  +QT++  S  +I       +I KR  +     R++  +++ ++ F KY +++ 
Sbjct: 267 YSQLKTMMQTLKVDSLEDITPSILDNYICKRHDEDGCNRRTIAATVTILRGFFKYAEEKG 326

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVD-NV---LLHTSHETKWIDARNSAILYL 162
           +     + +++        PR    +   + V  N+   +L +  +T  I  R+ AIL L
Sbjct: 327 LCNPGLVYSLKA-------PRVYAHENLPSFVPYNIVQQILQSKKDTAGIGVRDYAILLL 379

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           L   GLR SE  ++  ++I     TL ++  K  + +++PLLP V  AI+ Y     F+ 
Sbjct: 380 LSVYGLRCSEVTNMKLKDIDWRNETLYLRRAKNCRPQVLPLLPIVGNAIVRYIKEVRFNK 439

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-HTLRHSFATHLLSNGGDL 280
           +    L L +    + L+       +++  +  GL L     H+LRH+ ATHL++ G  L
Sbjct: 440 SKKEYLFLCKRAPHEQLSTSTIYNLVKKELKDKGLELRHYGPHSLRHTCATHLINTGHSL 499

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKN 305
           + I  +LGH  L TT+IY  V+ KN
Sbjct: 500 KEIADLLGHVGLDTTRIYAKVDIKN 524


>gi|158321643|ref|YP_001514150.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
 gi|158141842|gb|ABW20154.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
          Length = 286

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 143/287 (49%), Gaps = 26/287 (9%)

Query: 19  QNWLQNLE-IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ-TIRQLSYTEIRAFIS 76
           +N+L+ LE I+R  SK T++ Y+ +   F  FL    E+K   +  + Q+S  ++  ++ 
Sbjct: 8   ENFLRYLESIDR--SKETIKGYKKELGYFGRFL----EKKYGFEKEMEQISSVDLEDYMY 61

Query: 77  --KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
             K+  +K   RS  R +   +S  KY  KR++ T++  + + ++K   +    L+E++ 
Sbjct: 62  YLKKSGKKSATRS--RVVYIFRSLYKYSYKRELCTKNLAIFLESVKVKQTERDYLSEEEF 119

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGK 193
           + L+  +       +  + A    I Y     GLR+SEAL+LT +N+ +D++    I GK
Sbjct: 120 ILLIQKI------NSSIVKAAVQTIFY----TGLRVSEALNLTMENVKLDEKIIYTISGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GDK RI+P+   +   + +Y      D+  N     F   +   L+P    R +   +  
Sbjct: 170 GDKDRIIPISNKLYYILDDYVKNIRPDVESN---KFFCTKKTGSLSPQYINRMLHIAKDS 226

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           L    + +AH LRHSFA++L+     L ++Q +LGH  L  T  Y +
Sbjct: 227 LNWEKNISAHILRHSFASNLILQNAPLPAVQKLLGHSDLRVTSRYIH 273


>gi|224540989|ref|ZP_03681528.1| hypothetical protein CATMIT_00140 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526088|gb|EEF95193.1| hypothetical protein CATMIT_00140 [Catenibacterium mitsuokai DSM
           15897]
          Length = 335

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 137/290 (47%), Gaps = 17/290 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L + R  SK T+ SY+   + F++FL  +    I    + Q++   I  FI     +   
Sbjct: 18  LPLHRNCSKNTISSYKDSLKLFILFLRDHKSMNINKFKMHQINRELILEFIEWLENRGNS 77

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTES---NILNMRNLKKSNSLPRALNEKQALTLVDNV 141
             ++   L+GIKSF+ + +   +   +    +L++++LK +      L E+Q   L++  
Sbjct: 78  PVTINHRLAGIKSFINFAQYESVENLAYLQTVLSVKSLKTTTRQVDYLTEEQMNNLINLP 137

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIV 200
              TS        R+  I+ LLY  G R+ E   L  ++I + +  T+++ GKG KIRIV
Sbjct: 138 PTDTS-----TGIRHRIIMCLLYDTGARVQELCDLKIEDINLGNNPTVKLHGKGSKIRIV 192

Query: 201 PLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPG----VFQRYIRQLRRY-L 254
           P+  ++ + ILE Y    F D+ L  +  L +    + ++      + Q+Y   L+    
Sbjct: 193 PISKNMNQ-ILEVYISKFFSDIKLKNEY-LIKNKNNQQMSRDGIEYIVQKYATILKNNDP 250

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             P     H  RHS A H+L+    +  I+  LGH  +STT IY   +S+
Sbjct: 251 SFPSKVHPHMFRHSKAMHMLAVDIPIVYIRDFLGHEDISTTMIYARADSR 300


>gi|332884956|gb|EGK05210.1| hypothetical protein HMPREF9456_02974 [Dysgonomonas mossii DSM
           22836]
          Length = 342

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 152/340 (44%), Gaps = 43/340 (12%)

Query: 15  LKERQNWLQN--------LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           +KER ++ +         L  ER +S  T++SY     QF++++      K+   +++  
Sbjct: 1   MKERTDFAKQISRFLTTYLPYERSVSNNTIKSYSETFTQFVMYMRDCKSVKVEKLSLKHF 60

Query: 67  SYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRK---ITTESNILNMRNLKKS 122
           +   I  F+S    ++  G+ +    LS   SF KYL+ ++   I     I+++  LK  
Sbjct: 61  TKDNILGFLSWIISSRNCGNATRNYRLSAFCSFAKYLQYKEVGGIEVWQAIMSIPKLKTG 120

Query: 123 NSLPRALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                 L+       VD V  LL     +     R+ A+L L+   G R+ E   L P +
Sbjct: 121 EKPVEYLS-------VDAVKLLLAQPDVSTCRGRRDLALLSLMCDTGARVQEICDLIPMS 173

Query: 181 --IMDDQSTLRIQGKGDKIRIVPLL----PSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
             I  +  ++ + GKG + R +PLL     S+R  + E +   P  L    Q PLF   R
Sbjct: 174 LRIESEPFSVYVIGKGKRGRTIPLLKEQVESLRIYMKENFLFSPEKL----QHPLFYNCR 229

Query: 235 GKPLNPG----VFQRYIRQLRR-----YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
            + L       +  +Y+ + R+     + G     + HTLRH+ A HLL  G  L  I+ 
Sbjct: 230 HEKLTRAGVTYILDKYVDKARKENPAFFTG---HISCHTLRHTKAMHLLQAGVILHHIRD 286

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           ILGH  + TT+IY   +SK   + +   Y +  P+I  ++
Sbjct: 287 ILGHSSVMTTEIYARSDSKQKREAIERAYLRLSPNIESEN 326


>gi|282856363|ref|ZP_06265642.1| tyrosine recombinase XerD [Pyramidobacter piscolens W5455]
 gi|282585734|gb|EFB91023.1| tyrosine recombinase XerD [Pyramidobacter piscolens W5455]
          Length = 297

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 135/304 (44%), Gaps = 37/304 (12%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +ERG SK T ++Y    R   ++  +     +    + Q + +    FI   + Q     
Sbjct: 18  LERGHSKNTAETYR---RGLELWRGYCEAAGLDPLDVAQEALS---TFIHALKGQGRAGS 71

Query: 87  SLKRSLSGIKSFLKYL---KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
           S++  ++G++S++K+        + T   +L      K+  LP+ L E +        +L
Sbjct: 72  SIQLIVAGLRSWVKFRVLNGDLPMNTWIPVLPA----KAKKLPKILTEGEI-----QRIL 122

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
           +      + D R+   L  L  CG+R SE   L   ++  D   L + GKG K R +P  
Sbjct: 123 NACDGPGYYDCRDRTALETLANCGVRASELCGLKVGSLNLDDKNLIVFGKGSKERQIPFA 182

Query: 204 PSVRKAI-------LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
             +++         LE+ D          +  LF   R +PL+     R +++  +   +
Sbjct: 183 EDLKRQFQIYLQKRLEFLD------GDETEKMLFLSSRREPLSRVDLWRIVQKRGKMASV 236

Query: 257 PLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           P      H LRHS ATHLL  G DLR++Q  LGH  ++TT+ Y + + +     + ++YD
Sbjct: 237 PEERLFPHVLRHSIATHLLRRGMDLRTLQEFLGHSSIATTEKYLHFDLE-----LRDVYD 291

Query: 316 QTHP 319
           + HP
Sbjct: 292 RAHP 295


>gi|14010726|ref|NP_114212.1| hypothetical protein pFKN_p22 [Pseudomonas syringae pv. maculicola
           str. M6]
 gi|13926143|gb|AAK49554.1|AF359557_19 unknown [Pseudomonas syringae pv. maculicola str. M6]
          Length = 320

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 131/289 (45%), Gaps = 28/289 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W  NL+  R     T ++Y+ D   F  F+   + ++      R ++ + + A+ ++   
Sbjct: 32  WFANLDNPR-----TRRAYQNDLEDFCSFVGLASADEF-----RVVTRSHVLAWRAQLEH 81

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVD 139
           + +   +++R L+ + S   +L       E+N +   N       PR   NE +   L D
Sbjct: 82  RGLAGATIRRKLAALASLFDHL------LENNAIAGGNPVHGVKRPRIESNEGKTPALGD 135

Query: 140 N---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194
           +    LL    ET     R+ A+L +L   GLR  EA  L   +I + +    L++ GKG
Sbjct: 136 HQAKALLEAPDETTLKGQRDRALLAVLLYHGLRREEAALLQVSDIQERRGIQHLKVHGKG 195

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL---- 250
            K+R +PL P     I +Y +     L    ++PLF  +RGK    G+    I  +    
Sbjct: 196 GKVRYLPLHPIAAGRIHQYLENSEHHL-AERKVPLFMPLRGKLTGAGITANGIYAVVTAY 254

Query: 251 RRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            +  G+ +     H LR + AT+ L +  D+  +Q+ LGH  +STT+IY
Sbjct: 255 AKKAGIEVDGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303


>gi|325661290|ref|ZP_08149916.1| hypothetical protein HMPREF0490_00649 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472239|gb|EGC75451.1| hypothetical protein HMPREF0490_00649 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 302

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 131/279 (46%), Gaps = 24/279 (8%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R LS+ T++ Y  +  +F  F+    +++  I  + ++    I A+I+   +       +
Sbjct: 17  RRLSEKTIKGYRNNNLRFFTFI----KKEYDIDDLGKIQGNVINAYIAYLTSIGRKPSYI 72

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
              +   ++F KY +  K  + + +  +   K+  +L +  N+K+   +V          
Sbjct: 73  NGIIKSFRAFYKYCENEKYVSRNPMNKVNFQKQGKTLIKTFNDKEVRDMV-----RYYGS 127

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
            +++D R+  I+ +L   G+R SE   L   +I  D   + I+GKG+K R+VP+ P + K
Sbjct: 128 VRYLDIRDKLIMVMLLDTGIRNSELCGLLISDIRYDH--ILIRGKGNKERVVPISPILNK 185

Query: 209 AILEYYDLCPFDLNLNIQLP-------LFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLS 259
            +++Y  +     NL I+         LF   +GK L P   +R + +      +   + 
Sbjct: 186 ILIKYKRV----RNLYIKDKFAYQIEYLFLSQKGKKLTPETVERVVLECAEACKVRKTIR 241

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            + HT RH FA   L NG DL ++  +LGH  ++ T+IY
Sbjct: 242 CSPHTCRHYFAQAQLKNGCDLYTLSRLLGHSNINITKIY 280


>gi|148243976|ref|YP_001220215.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|146400539|gb|ABQ29073.1| phage integrase family protein [Acidiphilium cryptum JF-5]
          Length = 302

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 85/153 (55%), Gaps = 2/153 (1%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEY 213
           ++ A L + YG G+R++E  +L   +I  ++  +R++ GKG + R   L   +   + E+
Sbjct: 127 KHQAALSVAYGAGMRVAEVAALKVSDIDSERMLIRVERGKGGRYRNAILPADLLILLREW 186

Query: 214 YDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           + +      ++ Q  LF G +  KP++     R + +  R   +      HTLRHSFATH
Sbjct: 187 WKIGHQQGVMHAQGWLFPGQQVTKPISTRQLHRVVVEAARAAEITKRVGPHTLRHSFATH 246

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           LL +G D+R IQ++LGH  L+TT +YT V ++ 
Sbjct: 247 LLEDGVDIRVIQALLGHSHLNTTALYTKVATRT 279


>gi|325479493|gb|EGC82589.1| phage integrase, N-terminal SAM domain protein [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 329

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 151/325 (46%), Gaps = 36/325 (11%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF------------- 52
           + EI+   L+ +  N+L+++   RGLS  T++ Y  D    + F+               
Sbjct: 1   MKEIIQPILITDYLNYLKSI---RGLSSNTIKEYSYDLNLLIRFMIVRKIYYGNIVKFNK 57

Query: 53  -YTEEKIT-------IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK 104
            + +++I         +T+    +    +++   +      RS  R +S IKSF KYL  
Sbjct: 58  EFNDDEINSIINPSFFETLTLQDFYSYLSYLDNEKNDTASTRS--RKISAIKSFYKYLYS 115

Query: 105 RKITTESNILN-MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
                 SN+   + N K S   P  L   +   L+D +    + +  ++ +R+ AI++  
Sbjct: 116 EIEVINSNVSEKLTNPKISQRQPVYLTLTETERLLDTI---NNEKNDFLRSRDLAIVFTF 172

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLN 222
              G+R+SE +S+   +I++D     I GKG+K R V L  +  + I  Y  +   +  +
Sbjct: 173 LTTGMRLSELVSIDITDIVNDH--FNIIGKGNKERTVYLTDNCLQLIYSYILVRAKYIGD 230

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DL 280
            +I   LF   R K ++    Q  I +  +  G   S  + H LRH+ AT +   G  D+
Sbjct: 231 KDID-ALFISTRKKRISNRAVQSTIDKYLKKAGFDTSIYSTHKLRHTAATLMYKYGNVDI 289

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKN 305
           R+++ ILGH  +STTQIYT+++  +
Sbjct: 290 RALKDILGHSNVSTTQIYTHLDDDD 314


>gi|298250455|ref|ZP_06974259.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297548459|gb|EFH82326.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 350

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 142/302 (47%), Gaps = 32/302 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+ L+     ++ T++ Y      FL++     +  +T  T+  ++    R  +  +RT
Sbjct: 15  WLEELQAN-DRARGTIRRYRSAVEGFLVWYECCEQRSLTFATLTPITLVGYRNDL--QRT 71

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVD 139
           Q+    ++   +S +++F  +L +      +   +++ + +     R  L++ Q      
Sbjct: 72  QRRATSTVNGQISALRAFCAWLTEEHYLETNPARHLKLVGRQEVSSREGLDDAQV----- 126

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDK 196
           N LL  +  ++    RN AI+ +L   G+R+ E   LT  +I   + + R+   QGKG+K
Sbjct: 127 NALLRQARTSR-DPLRNYAIVQVLLQTGIRLDECSQLTLDDIELGERSGRVTIRQGKGNK 185

Query: 197 IRIVPLLPSVRKAILEYYDL---C-----------PFDLNLNIQLPLFRGIRGKPLNPGV 242
             +VPL  SVR+A+ EY      C           P   + +  +PL+   +   L    
Sbjct: 186 ACMVPLNASVRQALAEYMASRLNCDPTVKAVARHWPAYSSDSPTIPLWLSQKKGILTTSA 245

Query: 243 FQRYIRQLRRYLG----LPLSTTAHTLRHSFA-THLLSNGGDLRSIQSILGHFRLSTTQI 297
            ++ I  L R       +P  T+AHTLRH+FA  +L  + GDL  + S+LGH  L TT+I
Sbjct: 246 MRQMIDVLVRDTATRGLVPAQTSAHTLRHTFARNYLAEHPGDLVGLASLLGHTSLDTTRI 305

Query: 298 YT 299
           Y+
Sbjct: 306 YS 307


>gi|281422020|ref|ZP_06253019.1| putative integrase/recombinase XerD [Prevotella copri DSM 18205]
 gi|281403809|gb|EFB34489.1| putative integrase/recombinase XerD [Prevotella copri DSM 18205]
          Length = 298

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 106/217 (48%), Gaps = 22/217 (10%)

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
            K  + G++++ K +  +    + + L +  ++K   LPR L+++Q   L+ N  L+   
Sbjct: 81  FKHMIFGLQAYYKVMGLK----QPDGLVLPPVRKPKRLPRVLSQEQIARLLRNCSLY--- 133

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
                   +  +L ++Y C LR+ EA  L   +I  D+  L + QGKG K R VP+   +
Sbjct: 134 --------DKTLLAIIYDCALRVGEACRLRWDDICFDRKKLFVFQGKGRKDRYVPISDQM 185

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHT 264
              +  Y    P D  +        G + +P  + PG  +  ++     + L  S T H 
Sbjct: 186 LVVLKAYRKKYPSDDYVFKS----HGSKTEPQRITPGYVRIILKNALARVVLDHSITIHD 241

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LRHS ATHLL NG ++  +Q  LGH RL+TT +Y +V
Sbjct: 242 LRHSAATHLLENGENIVHVQKRLGHARLTTTMVYLHV 278


>gi|303240629|ref|ZP_07327144.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302591866|gb|EFL61599.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 279

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 115/244 (47%), Gaps = 23/244 (9%)

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSL-SGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L   EI+A++      ++ +R + RS  +   S LK+L +  +  E     +   K+   
Sbjct: 43  LGEEEIKAYLH----HQLIERKMSRSYNTQAYSALKFLYETTLKREWKSYKIPRCKREKK 98

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP+ L+ ++ +  + NV  +  H          AIL   Y  GLR+SE ++L   +I   
Sbjct: 99  LPKVLS-REEVKRIFNVTTNPKHR---------AILMTTYSSGLRVSEVVNLKVNDIDGK 148

Query: 185 QSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGV 242
           +  L +QG KG K R   L     + + +Y+ L       + +  LF G    +PL    
Sbjct: 149 RLQLFVQGGKGQKDRYTVLSRKNLELLRDYWKL------YHPKTWLFPGQDINEPLCVRT 202

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            Q+      R  G+    + HTLRHSFATHLL +G D   IQ +LGH  L TT IY +V 
Sbjct: 203 VQKVFENSVRKAGITKDVSVHTLRHSFATHLLESGVDTFYIQKLLGHSSLKTTSIYIHVG 262

Query: 303 SKNG 306
           + +G
Sbjct: 263 NLDG 266


>gi|295116103|emb|CBL36950.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1]
          Length = 289

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 118/267 (44%), Gaps = 34/267 (12%)

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-RNLKKSNSLPRAL 129
           +  FI   + + +   +++   + +K +L YL +R I+ E     M R+  K+    R L
Sbjct: 4   LSVFIEMLQAKNLAPNTIRGYQTYLKPYLSYLLERNISPEHASWEMVRDFLKTLQTSRHL 63

Query: 130 NEKQALTLVDNV------LLHTSHETK------------WIDARNSAILYL--------- 162
           +++    ++ ++      +LH   +              ++  RN   L+L         
Sbjct: 64  SDRTMNMVISHLQFFWIYVLHQPWDPSQIPFRKFRTYLPFVPDRNQVALFLNSLDDPKAR 123

Query: 163 -----LYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDL 216
                LY  GLR+ E   L  + I      L I   K    R VP+  S+ + I EY+  
Sbjct: 124 LACSILYAAGLRLDELCHLECRYIFLSSHRLYIPVSKNRSDRYVPIPESICRDIREYWYS 183

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
           CP  +     L   +  R +P++    QR I   R  LG+     AH+LRH++ATH   N
Sbjct: 184 CPAHMKPKTWLFTQQTNRSRPMDKQWLQRIILDRRNALGMDSRFCAHSLRHAYATHSYEN 243

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNS 303
           G DL S++S LGH  L++T IY ++ S
Sbjct: 244 GLDLLSLKSRLGHRSLNSTAIYVHLAS 270


>gi|295090287|emb|CBK76394.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 289

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 118/267 (44%), Gaps = 34/267 (12%)

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-RNLKKSNSLPRAL 129
           +  FI   + + +   +++   + +K +L YL +R I+ E     M R+  K+    R L
Sbjct: 4   LSVFIEMLQAKNLAPNTIRGYQTYLKPYLSYLLERNISPEHASWEMVRDFLKTLQTSRHL 63

Query: 130 NEKQALTLVDNV------LLHTSHETK------------WIDARNSAILYL--------- 162
           +++    ++ ++      +LH   +              ++  RN   L+L         
Sbjct: 64  SDRTMNMVISHLQFFWIYVLHQPWDPSQIPFRKFRTYLPFVPDRNQVALFLNSLDDPKAR 123

Query: 163 -----LYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDL 216
                LY  GLR+ E   L  + I      L I   K    R VP+  S+ + I EY+  
Sbjct: 124 LACSILYAAGLRLDELCHLECRYIFLSSHRLYIPVSKNRSDRYVPIPESICRDIREYWYS 183

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
           CP  +     L   +  R +P++    QR I   R  LG+     AH+LRH++ATH   N
Sbjct: 184 CPAHMKPKTWLFTQQTNRSRPMDKQWLQRIILDHRNALGMDSRFCAHSLRHAYATHSYEN 243

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNS 303
           G DL S++S LGH  L++T IY ++ S
Sbjct: 244 GLDLLSLKSRLGHRSLNSTAIYVHLAS 270


>gi|160942095|ref|ZP_02089410.1| hypothetical protein CLOBOL_06983 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434986|gb|EDP12753.1| hypothetical protein CLOBOL_06983 [Clostridium bolteae ATCC
           BAA-613]
          Length = 218

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 108/219 (49%), Gaps = 15/219 (6%)

Query: 95  IKSFLKYL-KKRKITTE-SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           +K+F  ++ K+ +I  + + +L    ++K   +  ++NE  AL  +D   + TS E    
Sbjct: 1   MKAFFNFMFKEGRIRKDPAELLKAPKIEKKAPVILSVNEVNAL--LDQPGMTTSKEI--- 55

Query: 153 DARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
             R+ A+L LLY  G+R+SE   L L+  N+     T R    G K R+VP     ++A+
Sbjct: 56  --RDKAMLELLYATGIRVSELIGLELSDLNMQVGYITCR---DGQKERMVPFGKPAKQAL 110

Query: 211 LEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
             Y +     L    +   LF    GK ++   F + I+      G+    T HTLRHSF
Sbjct: 111 SVYLEKGRSQLLKGKESQWLFTNCSGKAMSRQGFWKIIKYYGEKAGIQADITPHTLRHSF 170

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           A HL+  G D+ ++Q++LGH   +TT +Y   +    G+
Sbjct: 171 AAHLIRGGADIHAVQAMLGHSDSTTTHMYAAYSGNTVGE 209


>gi|119945130|ref|YP_942810.1| integron integrase [Psychromonas ingrahamii 37]
 gi|119863734|gb|ABM03211.1| integron integrase [Psychromonas ingrahamii 37]
          Length = 324

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 86/182 (47%), Gaps = 44/182 (24%)

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILE------- 212
           YLLYG GLR+ EA++L  Q+I  D  ++ I QGKG K R V L P + +++         
Sbjct: 127 YLLYGSGLRLMEAVNLRIQDINFDYLSINIWQGKGGKHRSVTLAPELIESLQNQITKVNL 186

Query: 213 YY--DLCPFDLNLNIQLPLFRGIRGKPLN-------------------PGV--------- 242
           YY  D+   D    + LP    + GK  N                   PG          
Sbjct: 187 YYQQDMQRTDYQ-GVYLP--HALAGKYPNAAKELKWHYLFPSTQLSFEPGTTNLRRHHMH 243

Query: 243 ---FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               Q+ ++   R L      T HTLRHSFATHLL  G D+R++Q  LGH  L TTQIYT
Sbjct: 244 ESNIQKAVKNAARTLDFKKQVTCHTLRHSFATHLLQRGTDIRTVQEQLGHTDLRTTQIYT 303

Query: 300 NV 301
           +V
Sbjct: 304 HV 305


>gi|157362896|ref|YP_001469663.1| phage integrase family protein [Thermotoga lettingae TMO]
 gi|157313500|gb|ABV32599.1| phage integrase family protein [Thermotoga lettingae TMO]
          Length = 276

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 131/273 (47%), Gaps = 32/273 (11%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           LS +T+++Y    R+F              Q+I +L+  EI  +     T   G +    
Sbjct: 20  LSSMTVRAYMSAVRKF-------------TQSIEELNVEEILKWAE---TTAEGRKPSTV 63

Query: 91  SL--SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           +L    I+ FL+ +    +    N L ++   +S+++P+AL+E++ L L +  +      
Sbjct: 64  NLYYCAIRRFLEEVSPEILLDLRNKLKVKG--RSSTIPKALSEREFLKLWNKAVKIFDE- 120

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
               D R   I+ L    GLR+SE  SL   +I   +  + + GKG K+RIVP+ PS  K
Sbjct: 121 ----DYRQLLIVGLAGYAGLRVSEIRSLKVGHINLREDHILVNGKGRKMRIVPI-PSKLK 175

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
             +  + + P    L  + PL + + GKP+        ++ L +  G+    + H LRH+
Sbjct: 176 PYI--FKIVP---KLKEEEPLLKNLSGKPITSHGISYLLKNLAKKTGIK-HISPHVLRHT 229

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            AT+LL  G +L+ +Q  LGH  L+TT+ Y  V
Sbjct: 230 AATNLLKKGVNLKIVQEFLGHSSLATTERYLRV 262


>gi|153954207|ref|YP_001394972.1| site-specific tyrosine recombinase XerC [Clostridium kluyveri DSM
           555]
 gi|146347088|gb|EDK33624.1| Predicted recombinase [Clostridium kluyveri DSM 555]
          Length = 328

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 100/326 (30%), Positives = 153/326 (46%), Gaps = 43/326 (13%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQ-- 61
           +L +I + EL     ++L  L   +G SK TL+ Y+ D   FL FL  Y   EK   Q  
Sbjct: 4   SLNQIYNPELPGYLNDFLNYLGTIKGKSKNTLEGYKVDLTMFLRFLKLYKGLEKEGSQFE 63

Query: 62  ----------TIRQLSYTEIRAFIS---KRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKI 107
                      I+Q++ +++ AFIS     R  K   R+  R ++ +KSF KYL  K K+
Sbjct: 64  KIKIKDIDIDIIKQITLSDLFAFISFIENYRHNKSYARA--RKVASLKSFFKYLCSKAKL 121

Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA----RNSAILYLL 163
            +E+  L + + + S   P           +   L  +    + ID     R+  I+   
Sbjct: 122 ISENPALELESPQISKRNP-----------IYLSLKESKLLLESIDGKFKERDYCIITFF 170

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
             CG+R+SE  S+   NI +D  TL + GKG+K R + L  S  +A+  Y  L   D  L
Sbjct: 171 LNCGMRLSELCSINISNIKED--TLTVIGKGNKERTIYLNKSCLEALKNY--LTSRDEYL 226

Query: 224 NI---QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG- 278
           N    +  LF       +N    +  +++  +   L     T H LRH+ AT +   G  
Sbjct: 227 NKIKDKDALFISKNYARINKRSVEIMLKKYLKKANLDSEKYTPHKLRHTAATLMYKYGHV 286

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSK 304
           D+RS+Q ILGH  +STTQIYT+V+ +
Sbjct: 287 DIRSLQKILGHENVSTTQIYTHVDDE 312


>gi|259909812|ref|YP_002650168.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224965434|emb|CAX56966.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 351

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 141/319 (44%), Gaps = 25/319 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++WL +L +  G S  T+Q Y    R FL +      E   I    Q+S   + A+    
Sbjct: 26  ESWLAHLVVA-GRSPRTVQGYRERVRAFLAWC-----EPRGITYAPQVSLAVLEAYQRWL 79

Query: 79  RTQKIGD------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNE 131
           +  +  D       S    L+ I+   ++L +R +   +    +   K+   LP +  +E
Sbjct: 80  QGYRRADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFSE 139

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            +   ++ ++   T         RN AIL LL+  G+R SE   L   ++   +  + ++
Sbjct: 140 AETRRVLQSLDAGTP-----PGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVR 194

Query: 192 -GKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-R 248
            GKG K R+VP+  +    +  Y  D+ P          LF   +G  L  G       R
Sbjct: 195 RGKGGKDRVVPVGHTALMWLGRYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGR 254

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            +R    L  +   H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V   +   
Sbjct: 255 AIREGAHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGH--- 311

Query: 309 WMMEIYDQTHPSITQKDKK 327
            + +++  THP+  ++ +K
Sbjct: 312 -LQKVHAHTHPAEKRRTEK 329


>gi|90578175|ref|ZP_01233986.1| hypothetical protein VAS14_14029 [Vibrio angustum S14]
 gi|90441261|gb|EAS66441.1| hypothetical protein VAS14_14029 [Vibrio angustum S14]
          Length = 296

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 103/216 (47%), Gaps = 18/216 (8%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++K + +G++ F K++ +R    +   LN+       +LP  L   +   L++       
Sbjct: 71  TVKINRNGLQFFFKHVLQR----DWEWLNIVKPPHVKTLPDILTPTEVSLLINAT----- 121

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205
                   R       LY  GLR+ E L+LT  NI   +  + I QGKG K R +PL P 
Sbjct: 122 -----SQLRYQVFFLTLYSLGLRLGEGLNLTVGNIDSHRMLVHIRQGKGGKDRFIPL-PR 175

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
                L YY       N +   P    +    ++ G  Q+ ++ + +  G+  S + H L
Sbjct: 176 RTLYALRYY--WQTHKNSHYLFPSQFNVNHTVMDRGGVQKAMKAVIKSCGITKSISPHNL 233

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           RHS+ATHLL  G DLRS+Q +LGH  L+TT  YT++
Sbjct: 234 RHSYATHLLERGLDLRSVQHLLGHNSLNTTAKYTHL 269


>gi|71725244|ref|YP_272203.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71558834|gb|AAZ38044.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 320

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 129/289 (44%), Gaps = 28/289 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W  NL+  R     T ++Y+ D   F  F+   + +       RQ++ + + A+ +    
Sbjct: 32  WFANLDNRR-----TRRAYQNDLTDFSSFIGLASADDF-----RQVTRSHVLAWRADLEQ 81

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVD 139
           + +   +++R L+ + S   +L       ++N +   N       PR   NE +   L D
Sbjct: 82  RGLAGATIRRKLAALASLFDHL------LDNNAVAGGNPVHGVKRPRIESNEGKTPALGD 135

Query: 140 N---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194
           +    LL    E+     R+ A+L +L   GLR  EA  L   +I + +    L+I GKG
Sbjct: 136 HQAKALLEAPDESTLKGRRDRAMLAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKG 195

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV----FQRYIRQL 250
            K+R +PL P     I  Y +     L  + ++PLF  +RGK    GV        +   
Sbjct: 196 GKVRYLPLHPVAAGRIHLYLERSEHHL-ADRKVPLFISLRGKSTGAGVSANGIYTVVEAY 254

Query: 251 RRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            +  G+ ++    H LR + AT+ L +  D+  +Q  LGH  +STT+IY
Sbjct: 255 AKKAGIEVAGLGVHGLRATAATNALEHEADIAKVQVWLGHANISTTRIY 303


>gi|149198666|ref|ZP_01875710.1| Integron integrase [Lentisphaera araneosa HTCC2155]
 gi|149138381|gb|EDM26790.1| Integron integrase [Lentisphaera araneosa HTCC2155]
          Length = 425

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 89/184 (48%), Gaps = 37/184 (20%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRK-------AI 210
           ++ L+YG GLR SEA  L  +++   +  L I+ GKGDK R VPL  S+ +        I
Sbjct: 221 MVRLIYGGGLRHSEAYRLRIKDVDTARMCLTIRSGKGDKDREVPLGDSLLEDLKNHLAQI 280

Query: 211 LEYYDLCPFDLNLNIQLP------------------LFRG-----------IRGKPLNPG 241
            + YD+   +      LP                  LF             +R   + PG
Sbjct: 281 RKLYDVDRAEEVAGCYLPNALERKSVNKGKEWAWFWLFPASTLSIDPRADVLRRHHVAPG 340

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               + +      G+  S T HTLRHSFATH+L +G D+R++Q I+GH  ++TTQIYT+V
Sbjct: 341 YLSNHYKNAIEKAGISKSATVHTLRHSFATHVLEDGYDIRTLQEIMGHNDVNTTQIYTHV 400

Query: 302 NSKN 305
             K+
Sbjct: 401 MGKH 404


>gi|299820311|gb|ADJ54321.1| integrase [archaeon enrichment culture clone 1(2010)]
          Length = 282

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 147/302 (48%), Gaps = 51/302 (16%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF--YTEEKITIQTIRQLSYTE 70
           EL    + +L +L+  RG S+ TL++Y     +F+ +LA    T +++T Q        +
Sbjct: 4   ELTSNLEGYLGSLK-ARGRSERTLKTYRSILTRFIDYLAVNGLTPDRVTEQ--------D 54

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           I  F+ +         SL      ++SFLKYL +         +N    K+   LP+ L 
Sbjct: 55  IDRFMLELSKMGWDQNSLFTVAVAVRSFLKYLGRN--------VNYPLPKRPKMLPKYLT 106

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            ++   L+              D     I+ LL   G+R+SE +++   +I  D+ ++R+
Sbjct: 107 REELTRLLGACQ----------DDYEKLIIGLLL-TGVRVSELVNIRVSDIDIDKRSIRV 155

Query: 191 QGKGDKIRIV-------PLLPS-VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
            GKG K R+V       PLL   +R+   E+  L P ++N +           + ++   
Sbjct: 156 VGKGYKERVVFFADWLVPLLKRYLRQNKSEW--LFPSEINPD-----------QHVHYVT 202

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +R ++++ +  G+    T HTLRH+FAT  L++G D+R IQ +LGH  LS+TQIYT+V+
Sbjct: 203 VERILKKIVKRAGINKKVTPHTLRHTFATLSLASGLDIREIQELLGHSSLSSTQIYTHVD 262

Query: 303 SK 304
            +
Sbjct: 263 PQ 264


>gi|32474798|ref|NP_867792.1| integrase/recombinase Y4QK [Rhodopirellula baltica SH 1]
 gi|32445338|emb|CAD75339.1| putative integrase/recombinase Y4QK [Rhodopirellula baltica SH 1]
          Length = 461

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 92/187 (49%), Gaps = 22/187 (11%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           +KS  LP  +++K+   +++               R+  +L +LY  GLR++E   L   
Sbjct: 155 RKSKQLPVVMSKKEVQRMMEAAR----------TLRDKLLLTVLYATGLRVAEVARLQWS 204

Query: 180 NIMDDQSTLRIQ-GKGDKIRIV----PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +   D+  +R+Q GKG K R V     LLP +R+       L      +    P      
Sbjct: 205 DFDFDRQQIRVQLGKGKKDRYVMLADDLLPLMRQ-------LWRHTKGVGYLFPSEGRRV 257

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            + L+P   QR ++Q R   G+  + T H+ RHSFATHL+ +G D+R IQ +LGH  L T
Sbjct: 258 DRHLSPRTIQRAVKQARILSGIGKAVTPHSFRHSFATHLIESGTDIRFIQKLLGHTNLET 317

Query: 295 TQIYTNV 301
           T +YT V
Sbjct: 318 TSLYTKV 324


>gi|291524090|emb|CBK89677.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 280

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 130/292 (44%), Gaps = 28/292 (9%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +E  N +Q+   +R L   T+ +Y      FL           T + I  L+  ++  
Sbjct: 1   MYEEIFNQIQSAANKRNLKDSTIHAYCTSVAHFL---------NHTAKDIDALTTDDVDI 51

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+++++   I   +     SGI+ F K + K+    +    ++  +K+   LP  L + +
Sbjct: 52  FLTEKKLSGISPETYNHYHSGIRFFYKKILKKNWDDD----DIPRMKRDRKLPTVLTKTE 107

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-G 192
              ++D             + ++ A++  +Y  GLR+SE   L   +I   + T+ I+ G
Sbjct: 108 ISAILDATP----------NLKHKAMIATMYSGGLRVSEVTHLHYDDISRTKKTIHIRDG 157

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K    R   L     + + EY+  C       I  P      G  L      ++ R+  +
Sbjct: 158 KSRSDRYTLLADRTLEILTEYWFQCG--RPRGILFP--SSWTGDYLTKDSVIQFFRESAK 213

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             G+    + H LRHSFA+HL  +G D++ IQ++LGH    +T++Y +V++K
Sbjct: 214 RAGIQKHVSTHCLRHSFASHLFESGCDVKYIQALLGHRDPKSTEVYLHVSNK 265


>gi|149198037|ref|ZP_01875085.1| Integron integrase [Lentisphaera araneosa HTCC2155]
 gi|149138949|gb|EDM27354.1| Integron integrase [Lentisphaera araneosa HTCC2155]
          Length = 419

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 136/309 (44%), Gaps = 63/309 (20%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLS 93
           T Q+Y    +++L+F+              +LS   +  F+S    +K +   +  ++ +
Sbjct: 119 TEQAYCSWIQRYLVFVKG-----------EELSGENVSRFVSHLAVEKNVASSTQNQAFN 167

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            +  F +Y+ ++++   S  L  R ++KS  LP  L  ++   ++             ++
Sbjct: 168 ALVFFFRYVLEKEVGDLSQTL--RAIRKSK-LPLVLTREEVCKIMAK-----------ME 213

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVR----- 207
                ++ L+YG GLR SEA  +  +++  ++  L ++ GKGDK R VPL  S+      
Sbjct: 214 GVPLLMVRLIYGGGLRHSEAYRMRVKDVDMERMCLTVKSGKGDKDREVPLGESLVEELHE 273

Query: 208 --KAILEYYD-----------------------------LCPFDLNLNIQLPLFRGIRGK 236
             K I E YD                                F  N+    P    IR  
Sbjct: 274 HLKKIREIYDEDRSNGVEGCYLPGALENKYPNAGKEWGWFWLFPANVLSNDPRANKIRRH 333

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            +         +Q  R  G+    T HTLRHSFATH+L +G D+R++Q ++GH  ++TTQ
Sbjct: 334 HVLSSYLSGPYKQALRAAGIAKVATIHTLRHSFATHVLEDGYDIRTLQELMGHNDVNTTQ 393

Query: 297 IYTNVNSKN 305
           IYT+V  K+
Sbjct: 394 IYTHVMGKH 402


>gi|91790630|ref|YP_551582.1| phage integrase [Polaromonas sp. JS666]
 gi|91699855|gb|ABE46684.1| phage integrase [Polaromonas sp. JS666]
          Length = 291

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 135/292 (46%), Gaps = 32/292 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ  L ++ + R L   T  SY    R+   FL   + +  T++ +R+     +      
Sbjct: 12  RQRMLDDMRL-RKLEDKTQSSYIRAVRKLAGFLR-RSPDTATVEDLRRFQLHLV------ 63

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q     +L  +++G+K F +   +R       +  M++++    LP  L+ ++   L
Sbjct: 64  --DQGTSPITLNATITGLKFFFEVTLERA----DLMARMQSVRVPQKLPVVLSPQEVARL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
           +     +  H+T          L + YG GLR SE ++L   +I   + TLR+ QGKG K
Sbjct: 118 I-AATANLKHQTA---------LSVAYGAGLRASEVIALKVGDIDSQRMTLRVEQGKGRK 167

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRG-KPLNPGVFQRYIRQLRR 252
            R   L P + + +  ++ +      +   LP   LF G+   +PL      R I    +
Sbjct: 168 DRYAMLAPVLLQRLRAWWRVGHAQGKM---LPGGWLFPGLDPVQPLTTRQLNRAIHAAAQ 224

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              +    + HTLRHSFATHLL    D+R IQ +LGH +L TT +YT+V ++
Sbjct: 225 DAKIDKRVSMHTLRHSFATHLLEQKVDIRVIQVLLGHKKLETTSMYTHVATE 276


>gi|221067020|ref|ZP_03543125.1| integrase family protein [Comamonas testosteroni KF-1]
 gi|220712043|gb|EED67411.1| integrase family protein [Comamonas testosteroni KF-1]
          Length = 322

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 139/316 (43%), Gaps = 42/316 (13%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI-SKR 78
           ++L +L  + GL++ TLQ  +   R F  +L      ++T ++    S  ++ AF+ S R
Sbjct: 22  DFLTDLFFQEGLAESTLQVLQIQLRAFNAWLL-----EVTGRSWEHASVKDLNAFLLSWR 76

Query: 79  RTQKIGDRSLKR-SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE-KQALT 136
             + +    LK+  L  + ++ K      ++ E  +L++R   +   LP + N   Q + 
Sbjct: 77  DARSVSTLRLKQWMLQRLYAWAKDAGIVDLSVERAMLSLRGGLRRPKLPPSSNAIAQLME 136

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L D         T     R+ A+L LLYG GLR +E L+LT   +      ++I GKG K
Sbjct: 137 LPDT--------TTAKGMRDRAVLELLYGSGLRAAELLNLTLDQLPSKGKPMQIWGKGSK 188

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF--------QRYIR 248
            R+V +    R  I +Y    P        L L  G  G      +F         RY  
Sbjct: 189 ERLVVVGDHARHWIAQYKSARP--------LILADGGHGHRSTAKLFVSSGRYPDYRYY- 239

Query: 249 QLRRYLG-----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           QLRR +        L  T H LRH+FA+HL      L +IQ +LGH    TT  Y ++  
Sbjct: 240 QLRRMVSRYGRECGLRLTPHALRHAFASHLYQGKASLHTIQLLLGHECQETTAHYVSIFH 299

Query: 304 KNGGDWMMEIYDQTHP 319
           ++       + DQ HP
Sbjct: 300 EDS----RALVDQHHP 311


>gi|28871740|ref|NP_794359.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|66044722|ref|YP_234563.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
 gi|302185971|ref|ZP_07262644.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Pseudomonas syringae pv. syringae 642]
 gi|28854992|gb|AAO58054.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|63255429|gb|AAY36525.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 320

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 130/289 (44%), Gaps = 28/289 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W  NL+  R     T ++Y+ D   F  F+   + ++      R ++ + + A+ +    
Sbjct: 32  WFANLDNPR-----TRRAYQNDLEDFCSFIGLASADEF-----RVVTRSHVLAWRAHLEH 81

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVD 139
           + +   +++R L+ + S   +L       E+N +   N       PR   NE +   L D
Sbjct: 82  RGLAGATIRRKLAALASLFDHL------LENNAIAGGNPVHGVKRPRIESNEGKTPALGD 135

Query: 140 N---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194
           +    LL    ET     R+ A+L +L   GLR  EA  L   +I + +    L++ GKG
Sbjct: 136 HQAKALLEAPDETTLKGQRDRALLAVLLYHGLRREEAALLQVSDIQERRGIQHLKVHGKG 195

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL---- 250
            K+R +PL P     I +Y +     L    ++PLF  +RGK    G+    I  +    
Sbjct: 196 GKVRYLPLHPIAAGRIHQYLENSEHHL-AERKVPLFMPLRGKLTGAGITANGIYAVVTAY 254

Query: 251 RRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            +  G+ +     H LR + AT+ L +  D+  +Q+ LGH  +STT+IY
Sbjct: 255 AKKAGIEVDGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303


>gi|95931413|ref|ZP_01314121.1| Integron integrase [Desulfuromonas acetoxidans DSM 684]
 gi|95132531|gb|EAT14222.1| Integron integrase [Desulfuromonas acetoxidans DSM 684]
          Length = 335

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 122/284 (42%), Gaps = 52/284 (18%)

Query: 61  QTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           Q  + +  +EI AF++    +K +   +  ++LS I    +++  R I     ++  R  
Sbjct: 55  QHPKDMGESEINAFLTYLAVKKKVSASTQNQALSAILYLYRHVIGRDIGDLGEVIRARKP 114

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K+   LP  +  ++   ++D +     +  KW+ A       LLYG GLR+ E L L  Q
Sbjct: 115 KR---LPVVMTREEVKAVLDQL-----NGDKWLMAS------LLYGSGLRLMECLQLRVQ 160

Query: 180 NI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY------------------------- 213
           ++    +  L   GKG K R   L  S+  A+ E+                         
Sbjct: 161 DLDFAGRELLVRDGKGGKDRRTMLPQSLVAALQEHLIHVKKIHDKDLNDGCGKVPLPGAL 220

Query: 214 ---YDLCPFDLNLNIQLPL-------FRGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTA 262
              Y   P+D       P          G  G+  ++  + QR +R+     G+      
Sbjct: 221 DRKYPQAPWDWRWQWVFPQANRWKNKITGEEGRHHVHETILQRAVREAVSRAGVVKRVGC 280

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           HT RH FATHLL  G D+R+IQ +LGH  ++TT IYT+V +K G
Sbjct: 281 HTFRHCFATHLLEAGYDIRTIQELLGHKDVNTTMIYTHVLNKGG 324


>gi|283479897|emb|CAY75813.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 351

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 139/318 (43%), Gaps = 23/318 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI--RAFIS 76
           ++WL +L +  G S  T Q Y     +   FLA+     IT      L+  E   R    
Sbjct: 26  ESWLAHLVVA-GRSARTAQGY---GERVXAFLAWCEPRGITYAPQVSLAVLEAYQRWLQG 81

Query: 77  KRRT---QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEK 132
            RR    Q + +  L R LS ++   ++L KR     S    +   K+   LP +  +E 
Sbjct: 82  YRRADGKQLVVNSQLHR-LSAVRMLFRWLLKRHHILYSPAEQLELPKEERRLPAQVFSEA 140

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ- 191
           +   ++ ++   T         R  AIL LL+  G+R SE   L   ++   +  + ++ 
Sbjct: 141 ETRRVLQSLDAGTP-----PGLRXRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVRR 195

Query: 192 GKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQ 249
           GKG K R+VP+  +    +  Y  D+ P          LF   +G  L  G       R 
Sbjct: 196 GKGGKDRVVPVGHTALMWLXRYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGRA 255

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           +R    L  +   H  RH  AT +L NG D R IQ+ILGH +L TTQIYT V   +    
Sbjct: 256 IRSGAHLKKAGACHIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGH---- 311

Query: 310 MMEIYDQTHPSITQKDKK 327
           + +++  THP+  ++ +K
Sbjct: 312 LQKVHAHTHPAEKRRTEK 329


>gi|322806579|emb|CBZ04148.1| integrase/recombinase (XerC/CodV family) [Clostridium botulinum
           H04402 065]
          Length = 330

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 149/304 (49%), Gaps = 31/304 (10%)

Query: 6   LPE---IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
           LPE   +VS ++ ++ Q +L   +++ GLS+ TL++YEC+    LIF     +   TI T
Sbjct: 43  LPEETALVSSDIEEKLQIYLATKKLD-GLSRKTLKNYECN---LLIFADHLRKPLSTINT 98

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +      ++R F++  R + +   S+   +S +KSF  +L + +   ++    ++  K+ 
Sbjct: 99  M------DLRMFLT-VRCKSMKATSVNGQISILKSFFGWLHEEEYIPKNPAKKLKQTKEP 151

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             + + L E++        LL  S +T     R  A++  L   G R+SE + +   +I 
Sbjct: 152 KRVRKPLTEEEI------ELLRQSCKTD----REEALIEFLISTGCRLSEIVEVNKDDIN 201

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP--LNP 240
             + +L + GKGDK R V    +  K +L+ Y L   D N      LF   R     L  
Sbjct: 202 WHEMSLFVVGKGDKERKV-YFSTKAKILLKKYLLTRADNNE----ALFVTSRSPHNRLGG 256

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              QR I+++    G+  S   H  RHSFAT+ +++G  +  IQ ++GH   +TTQIY  
Sbjct: 257 RSIQREIKKIANMAGIEKSIHPHLFRHSFATYKINSGMPMPIIQHLMGHESPATTQIYAQ 316

Query: 301 VNSK 304
           ++ +
Sbjct: 317 LSEE 320


>gi|32474109|ref|NP_867103.1| integrase/recombinase [Rhodopirellula baltica SH 1]
 gi|32444646|emb|CAD74648.1| putative integrase/recombinase [Rhodopirellula baltica SH 1]
          Length = 347

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 92/187 (49%), Gaps = 22/187 (11%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           +KS  LP  +++K+   +++               R+  +L +LY  GLR++E   L   
Sbjct: 41  RKSKQLPVVMSKKEVQRMMEAAR----------TLRDKLLLTVLYATGLRVAEVARLQWS 90

Query: 180 NIMDDQSTLRIQ-GKGDKIRIV----PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +   D+  +R+Q GKG K R V     LLP +R+       L      +    P      
Sbjct: 91  DFDFDRQQIRVQLGKGKKDRYVMLADDLLPLMRQ-------LWRHTKGVGYLFPSEGRRV 143

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            + L+P   QR ++Q R   G+  + T H+ RHSFATHL+ +G D+R IQ +LGH  L T
Sbjct: 144 DRHLSPRTIQRAVKQARILSGIGKAVTPHSFRHSFATHLIESGTDIRFIQKLLGHTNLET 203

Query: 295 TQIYTNV 301
           T +YT V
Sbjct: 204 TSLYTKV 210


>gi|159046238|ref|YP_001541910.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|159046544|ref|YP_001542214.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|157913997|gb|ABV95429.1| phage integrase [Dinoroseobacter shibae DFL 12]
 gi|157914303|gb|ABV95733.1| phage integrase [Dinoroseobacter shibae DFL 12]
          Length = 334

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 132/292 (45%), Gaps = 24/292 (8%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF---ISKRRT 80
           +L  E G S+ T+ +Y C     L F+    +   +   I  L    IRAF   I + R 
Sbjct: 15  HLPHECGASRHTIAAYACAFTLLLRFVTGRVKRTPSELFIEDLDIQTIRAFLEHIEEGRA 74

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNS-LPRALNEKQALTL 137
             +  R+ +  L+ IKSF ++++ R+       + +R +  K++++ L   L +++   L
Sbjct: 75  NSVRSRNAR--LAAIKSFFRFVEHRQPACLEQAMMIRAMPTKRTDAKLIDYLTKEEVRAL 132

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQGKGDK 196
           +     HT         R+ A+L+L Y  GLR SE L++   +  D   S +RI GKG +
Sbjct: 133 LAAPNRHTPG-----GLRDRAMLHLTYAAGLRASELLAVRMDDFPDGSFSNVRILGKGRR 187

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-----R 251
            R++PL    + AI  +  + P  +       LF    G+ +    F   +RQ      R
Sbjct: 188 ERVLPLWKETQCAIRAWLAVRPGRVGPE----LFLNRDGRRMTRDGFAYRLRQHVATAER 243

Query: 252 RYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               +     T H LRHS A H L   GD+R +   LGH  + TT++Y   +
Sbjct: 244 STPSIAAKQVTPHVLRHSCAMHTLQATGDIRKVALWLGHASIQTTEMYLRAD 295


>gi|82703133|ref|YP_412699.1| Phage integrase [Nitrosospira multiformis ATCC 25196]
 gi|82411198|gb|ABB75307.1| Phage integrase [Nitrosospira multiformis ATCC 25196]
          Length = 329

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 129/292 (44%), Gaps = 31/292 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W  N++     S  T ++Y+ D R F+ F    + E       R ++ + + A+  +   
Sbjct: 38  WFANID-----SLQTRRAYQNDLRGFMAFAGIVSPEDF-----RLITRSHVLAWRKRLEE 87

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN--LKKSNSLPRALNEKQALTLV 138
           +++G  +++R L+ + S  +YL +    T + +  ++   ++       AL + QA    
Sbjct: 88  EQLGGATIRRKLAALSSLFEYLCEANAVTHNPVKGVKRPPVESWQGKTPALGDVQA---- 143

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ---STLRIQGKGD 195
              LL   +       R+ AIL  L   G+R  E   L  ++    +     LRI+GKG 
Sbjct: 144 -RALLEAPNAKTLKGKRDRAILSALLYHGIRREELARLKVKDYNQSRRGVPHLRIKGKGG 202

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-------PLNPG--VFQRY 246
           K+R +P  P     I EY +      + +   PLFR ++          L P    F+  
Sbjct: 203 KMRFIPTHPGTLTLIEEYLEAAGHGHDPDA--PLFRPVKNNVHGHTLTALTPDSIYFEVV 260

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           ++ LR+      +   H +R + AT+ L NG D+  +Q  LGH  ++TT+IY
Sbjct: 261 LKYLRKLGIFGENMGPHVMRATAATNALDNGADIAKVQEWLGHANIATTRIY 312


>gi|87302036|ref|ZP_01084870.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Synechococcus sp. WH 5701]
 gi|87283604|gb|EAQ75559.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Synechococcus sp. WH 5701]
          Length = 323

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 134/312 (42%), Gaps = 62/312 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRS 87
           R  ++ T+ SY    ++FL F          ++  R++   EI AF+S   T+ ++   +
Sbjct: 20  RHYARRTITSYAQWVKRFLRFHG--------MRHPREMGEEEINAFLSHLATEGQVSAST 71

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++LS +    + +    +     ++  R  K+   LP  L   +   ++         
Sbjct: 72  QNQALSALLFLYRTVLSGDVGNLEGVVRARQRKR---LPVVLTVAEVKAVLSQ------- 121

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
               ++     +  LLYG GLR+ EAL L  +++      L ++ GKGDK R+  L  SV
Sbjct: 122 ----LEGVEQLVAQLLYGSGLRLMEALRLRVKDVDCQARQLTVRSGKGDKDRVTMLPTSV 177

Query: 207 RKAILEYY----DLCPFDLNLN---IQLPLFRGIRGKP---------------------- 237
            + +  Y     ++   DL      + LPL  G R  P                      
Sbjct: 178 VEPVQAYLLAVREIHRADLAAGWGRVMLPLALG-RKYPTAASEWAWQWVFPQAHRWHDRN 236

Query: 238 --------LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
                   ++P + Q+ +++     G+    + HT RHSFATHLL  G D+R+IQ +LGH
Sbjct: 237 NRTEGRHHIDPSLIQKAVKRAVLSAGVSKQASCHTFRHSFATHLLERGHDIRTIQELLGH 296

Query: 290 FRLSTTQIYTNV 301
             + TT IYT+V
Sbjct: 297 SDVKTTMIYTHV 308


>gi|32471146|ref|NP_864139.1| integrase [Rhodopirellula baltica SH 1]
 gi|32396848|emb|CAD71816.1| integrase [Rhodopirellula baltica SH 1]
          Length = 292

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 79/152 (51%), Gaps = 12/152 (7%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV----PLLPSVRKA 209
           R+  +L +LY  GLR++E   L   +   D+  +R+Q GKG K R V     LLP +R+ 
Sbjct: 11  RDKLLLTVLYATGLRVAEVARLQWSDFDFDRQQIRVQLGKGKKDRYVMLADDLLPLMRQ- 69

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
                 L      +    P       + L+P   QR ++Q R   G+  + T H+ RHSF
Sbjct: 70  ------LWRHTKGVGYLFPSEGRRVDRHLSPRTIQRAVKQARILSGIGKAVTPHSFRHSF 123

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           ATHL+ +G D+R IQ +LGH  L TT +YT V
Sbjct: 124 ATHLIESGTDIRFIQKLLGHTNLETTSLYTKV 155


>gi|219854815|ref|YP_002471937.1| hypothetical protein CKR_1472 [Clostridium kluyveri NBRC 12016]
 gi|219568539|dbj|BAH06523.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 355

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 100/326 (30%), Positives = 153/326 (46%), Gaps = 43/326 (13%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQ-- 61
           +L +I + EL     ++L  L   +G SK TL+ Y+ D   FL FL  Y   EK   Q  
Sbjct: 31  SLNQIYNPELPGYLNDFLNYLGTIKGKSKNTLEGYKVDLTMFLRFLKLYKGLEKEGSQFE 90

Query: 62  ----------TIRQLSYTEIRAFIS---KRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKI 107
                      I+Q++ +++ AFIS     R  K   R+  R ++ +KSF KYL  K K+
Sbjct: 91  KIKIKDIDIDIIKQITLSDLFAFISFIENYRHNKSYARA--RKVASLKSFFKYLCSKAKL 148

Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA----RNSAILYLL 163
            +E+  L + + + S   P           +   L  +    + ID     R+  I+   
Sbjct: 149 ISENPALELESPQISKRNP-----------IYLSLKESKLLLESIDGKFKERDYCIITFF 197

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
             CG+R+SE  S+   NI +D  TL + GKG+K R + L  S  +A+  Y  L   D  L
Sbjct: 198 LNCGMRLSELCSINISNIKED--TLTVIGKGNKERTIYLNKSCLEALKNY--LTSRDEYL 253

Query: 224 NI---QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG- 278
           N    +  LF       +N    +  +++  +   L     T H LRH+ AT +   G  
Sbjct: 254 NKIKDKDALFISKNYARINKRSVEIMLKKYLKKANLDSEKYTPHKLRHTAATLMYKYGHV 313

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSK 304
           D+RS+Q ILGH  +STTQIYT+V+ +
Sbjct: 314 DIRSLQKILGHENVSTTQIYTHVDDE 339


>gi|254479225|ref|ZP_05092570.1| site-specific recombinase, phage integrase family
           [Carboxydibrachium pacificum DSM 12653]
 gi|214034826|gb|EEB75555.1| site-specific recombinase, phage integrase family
           [Carboxydibrachium pacificum DSM 12653]
          Length = 348

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 125/233 (53%), Gaps = 15/233 (6%)

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRALNE 131
           +F++  R+     R+  R ++ ++SF  YL +K K+ +++    + + K S   P  L  
Sbjct: 112 SFVTNERSNTPPARA--RKVASLRSFYNYLYRKAKVISKNPTQELESPKLSVRHPIYLTL 169

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           +++  L++++             R+ AI+ L   CGLR+SE +++   +I +D+  L + 
Sbjct: 170 EESKKLLNSI-------DGPFKERDYAIITLFLNCGLRVSELVNINLDDIKEDK--LTVI 220

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG+K R + L  +  KAI +Y  + P +  +  +  LF   R K ++    Q  +++  
Sbjct: 221 GKGNKQRTIYLNEACIKAISDYLKVRPKE-GVKDKKALFLSKRLKRISVKTVQYLVKKHL 279

Query: 252 RYLGLP-LSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVN 302
           ++  L     +AH LRH+ AT +   G  D+R++Q +LGH  +STTQIYT+V+
Sbjct: 280 KHANLEGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVD 332


>gi|239817469|ref|YP_002946379.1| integrase family protein [Variovorax paradoxus S110]
 gi|239804046|gb|ACS21113.1| integrase family protein [Variovorax paradoxus S110]
          Length = 290

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 103/223 (46%), Gaps = 22/223 (9%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV---DNVLL 143
           +L  +++G+K F     +R    E     M  +    +LP  L+  +A  L+    N   
Sbjct: 71  TLNATITGLKFFFDVTLRRGELVE----RMSYVHVPQTLPVVLSRDEAARLIAAATNPKY 126

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL 202
           HT+             L + YG GLR+SE ++L   +I  ++ TLR+ QGKG K R   L
Sbjct: 127 HTA-------------LSIAYGTGLRVSEIVALKVGDIDSERMTLRVEQGKGRKDRYAML 173

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTT 261
            P + + +  ++        +     LF G     PL      R +        +    T
Sbjct: 174 SPVLLERLRAWWRYANAKGKMLPNGWLFPGQNPVDPLTARQLNRAVHDAAAAAKIDKRVT 233

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            HTLRHSFATHLL    D+R IQ +LGH +L TT +YT+V ++
Sbjct: 234 MHTLRHSFATHLLEQKVDIRVIQVMLGHKKLETTSVYTHVATE 276


>gi|189425308|ref|YP_001952485.1| TetR family transcriptional regulator [Geobacter lovleyi SZ]
 gi|189421567|gb|ACD95965.1| putative transcriptional regulator, TetR family [Geobacter lovleyi
           SZ]
          Length = 325

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 128/286 (44%), Gaps = 65/286 (22%)

Query: 74  FISKRRTQKIGDRSLKRSLSGI--------------KSFLKYLKKRKITTESNILN-MRN 118
           + +KR  Q++G + ++  L+ +              K+ L++L K  +  +   L+ +  
Sbjct: 41  YHNKRHPQEMGKKEIEGFLTYLATERQVAAATQNQAKAALQFLYKEVLEIQLPWLDEVEQ 100

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY-LLYGCGLRISEALSLT 177
            KK   LP  L EK+  +L+ +V             +  A+L  L+YG G+R+ E L L 
Sbjct: 101 AKKPKRLPVVLTEKEVHSLLAHV------------PQAYALLARLMYGTGMRLLEGLRLR 148

Query: 178 PQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY----------------------- 213
            Q++  +++ L I +GKG K R+  L  S+ K + E+                       
Sbjct: 149 VQDLDFERAELLIREGKGGKDRVTMLPQSLLKPLQEHLKQVKQAHEQDLLKGYGEVWLSE 208

Query: 214 -----YDLCPFDLNLNIQLPLFR-------GI-RGKPLNPGVFQRYIRQLRRYLGLPLST 260
                Y     +       P  R       G+ R   L+    QR I+Q     GL  + 
Sbjct: 209 SVARKYPNAGREWVWQYVFPSARLSVDPRSGVTRRHHLDEKGLQRAIKQAAVDAGLTKNV 268

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           T HTLRHSFATHLL  G D+R++Q +LGH  + TT IYT+V +K G
Sbjct: 269 TPHTLRHSFATHLLQAGYDIRTVQELLGHKDVQTTMIYTHVLNKGG 314


>gi|323705364|ref|ZP_08116939.1| integrase family protein [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535266|gb|EGB25042.1| integrase family protein [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 327

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 131/252 (51%), Gaps = 18/252 (7%)

Query: 58  ITIQTIRQLSYTEIRAFIS---KRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNI 113
           + I  I  +   ++ AF+S     R+     R+  R ++ ++SF  YL  KRK+ T++  
Sbjct: 67  VDISLIESIDLNDLYAFLSFVTHERSNTPPARA--RKVASLRSFYNYLYAKRKVITKNPA 124

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
           L + + K        + +   LTL ++V L  S + ++ + R+ AI+ L   CGLR+SE 
Sbjct: 125 LELESPK------LGIRQPVYLTLDESVKLLNSIDGEFKE-RDYAIITLFLNCGLRLSEL 177

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
            ++   +I DD+  L + GKG+K R V L  +   AI +Y  + P D  +  +  LF   
Sbjct: 178 ANINITDIKDDK--LTVIGKGNKQRTVYLNDACINAINDYLKVRPHD-GVKDKKALFLSK 234

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFR 291
           R + ++    Q  +++  +   L     + H LRH+ AT +   G  D+R++Q +LGH  
Sbjct: 235 RLQRISIKTIQYIVKKHLKDANLDGKKYSTHKLRHTAATLMYRYGKVDIRTLQRLLGHSN 294

Query: 292 LSTTQIYTNVNS 303
           +STTQIYT+V+ 
Sbjct: 295 VSTTQIYTHVDD 306


>gi|228900732|ref|ZP_04064950.1| Integrase/recombinase [Bacillus thuringiensis IBL 4222]
 gi|228858916|gb|EEN03358.1| Integrase/recombinase [Bacillus thuringiensis IBL 4222]
          Length = 305

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 140/304 (46%), Gaps = 16/304 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L++ E+  GL+  T+QSY     +F  +L    +E I I+ I          + SK 
Sbjct: 9   KDYLEDKELS-GLAPRTIQSYGDTLNEFSRWLVV-EKEIINIEDITPPVIKGYLLYCSKE 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKIT-TESNILNMRNLKKSNSLPRALNEKQALTL 137
           R   +  R+ K  L  +K+F +YL+   I    SN  N     K++   +  +++Q   +
Sbjct: 67  RGNTVVTRNGK--LQHLKTFFRYLEDEDIIEIRSNPTNKIKPAKTDKTIKVYSDEQIKQM 124

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +       S E      R   ++ +L G G+R+ E +S+   ++     T+ I GK  K 
Sbjct: 125 LRYYRRMRSRENTLYSYRGHTVIVVLAGTGIRLGELVSMRWDSVDLLNKTITIFGKNRKS 184

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLG 255
              PL   V + + E+   C       I+LP  +F   RG PL     +    +L   +G
Sbjct: 185 LSTPLTDKVARELYEWRLFCE---KYYIKLPAHVFNDHRGNPLTVNAVKLMFTRLSSRMG 241

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
               TTAH  RH++A++ L  G D+ ++  ++ H ++ TT++Y +      G+ + E  D
Sbjct: 242 F--KTTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHA----FGNSLAESND 295

Query: 316 QTHP 319
           + +P
Sbjct: 296 KYNP 299


>gi|257485772|ref|ZP_05639813.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|302130294|ref|ZP_07256284.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|331012868|gb|EGH92924.1| Phage integrase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 320

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 131/289 (45%), Gaps = 28/289 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W  NL+  R     T ++Y+ D   F  F+   + ++      R ++ + + A+ ++   
Sbjct: 32  WFANLDNPR-----TRRAYQNDLEDFCGFVGLASADEF-----RVVTRSHVLAWRAQLEH 81

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVD 139
           + +   +++R L+ + S   +L       ESN +   N       P+   NE +   L D
Sbjct: 82  RGLAGATIRRKLAALASLFDHL------LESNAIAGGNPVHGVKRPKIESNEGKTPALGD 135

Query: 140 N---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194
           +    LL    ET     R+ A++ +L   GLR  EA  L   +I D +    L++ GKG
Sbjct: 136 HQAKALLEAPDETTLKGLRDRALMAVLLYHGLRREEAALLQVGDIQDRRGIQHLKVHGKG 195

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL---- 250
            K+R +PL P     I +Y +        + ++PLF  +RGK    G+    I  +    
Sbjct: 196 GKVRYLPLHPVAAGRIHQYLESSGHHW-ADRKVPLFIPLRGKLTGAGITANGIYMVVAAY 254

Query: 251 RRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            +  G+ +     H LR + AT+ L +  D+  +Q+ LGH  +STT+IY
Sbjct: 255 AKKAGIQVDGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303


>gi|332971281|gb|EGK10244.1| tyrosine recombinase XerC [Desmospora sp. 8437]
          Length = 302

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 135/296 (45%), Gaps = 29/296 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N+L +L+ + G S  T+++YE    QF+ +    T E+   +++  +   + +  +  R 
Sbjct: 15  NFLFDLQSD-GRSPKTMKTYEGVVHQFIRWFEDTTGERFDPESVTPIDAADYKRHLLDRS 73

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  ++ ++   +K +  +L K+ +  ES   +++ +K+    PR L+ K+   L+ 
Sbjct: 74  KPA----TVNKARIALKRYFDWLVKQGVCKESPWKSIQPVKQGRQAPRWLDRKEQRALIR 129

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM----DDQSTLRIQGKGD 195
            V        K  + R+ AI++LL   GLR+ E   L  +++       ++ +R  GKG 
Sbjct: 130 QV-------QKERNPRDIAIVFLLLHGGLRVEELCHLQLEDVKLSERKGKAVVR-HGKGG 181

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R VPL   VRKA+ E+       +  +    LF   R   +     Q  +R+  +  G
Sbjct: 182 KWREVPLNRDVRKALEEW-----LAVRSSFSPWLFVSTRKDQMTTRAVQYVVRKYGQRAG 236

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF------RLSTTQIYTNVNSKN 305
           +    + HTLRH+F   L   G  L  I ++ GH        ++TT IYT    ++
Sbjct: 237 MD-QCSPHTLRHTFCHELAVKGVPLDVIAALAGHMTADGRPNIATTAIYTTPGDQD 291


>gi|20807810|ref|NP_622981.1| site-specific tyrosine recombinase XerC [Thermoanaerobacter
           tengcongensis MB4]
 gi|34222923|sp|Q8RA66|XERC_THETN RecName: Full=Tyrosine recombinase xerC
 gi|20516368|gb|AAM24585.1| Integrase [Thermoanaerobacter tengcongensis MB4]
          Length = 353

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 125/233 (53%), Gaps = 15/233 (6%)

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRALNE 131
           +F++  R+     R+  R ++ ++SF  YL +K K+ +++    + + K S   P  L  
Sbjct: 117 SFVTNERSNTPPARA--RKVASLRSFYNYLYRKAKVISKNPTQELESPKLSVRHPIYLTL 174

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           +++  L++++             R+ AI+ L   CGLR+SE +++   +I +D+  L + 
Sbjct: 175 EESKKLLNSI-------DGPFKERDYAIITLFLNCGLRVSELVNINLDDIKEDK--LTVI 225

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG+K R + L  +  KAI +Y  + P +  +  +  LF   R K ++    Q  +++  
Sbjct: 226 GKGNKQRTIYLNEACIKAISDYLKVRPKE-GVKDKKALFLSKRLKRISVKTVQYLVKKHL 284

Query: 252 RYLGLP-LSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVN 302
           ++  L     +AH LRH+ AT +   G  D+R++Q +LGH  +STTQIYT+V+
Sbjct: 285 KHANLEGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVD 337


>gi|188997103|ref|YP_001931354.1| integrase family protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932170|gb|ACD66800.1| integrase family protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 297

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 129/291 (44%), Gaps = 50/291 (17%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T+++Y  D  QF+  +          + I +++  +I  F    + Q     ++ R L+ 
Sbjct: 21  TVKNYRVDFNQFIKIVGD--------KNINEITKADIAKFRMTLQMQNRKSSTIARKLAS 72

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           I S  +YL   ++ + S I      K S  +P AL+ ++   L+D            +D+
Sbjct: 73  INSLFQYLMDLELVSSSPITKSHRPKVSQKIPSALSNEEVKKLID-----------ALDS 121

Query: 155 -RNSAILYLLYGCGLRISEALSLTPQNIM--------------------DDQSTLRIQGK 193
            ++ AI+ L    GLR SE LS+   NI+                     D + +R+ GK
Sbjct: 122 IQDKAIVVLFLTTGLRSSELLSIKKSNIIVERNGQTFSIDRLIEGEVKEGDIAYIRVVGK 181

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GDK R VP+     + +++Y  L   +  L+    +F      P++  +  R I+ + + 
Sbjct: 182 GDKEREVPITGKPLEILVQY--LKSINEFLDDNEYIF------PISYHLLWRKIKNIGKK 233

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           L + L    H LRH+ AT  LS+G +LR IQ +LGH    TT  Y  V  K
Sbjct: 234 LAITLH--PHKLRHTAATMALSSGAELRVIQELLGHASPVTTARYAKVGQK 282


>gi|254450128|ref|ZP_05063565.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264534|gb|EDY88804.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 315

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 76/150 (50%), Gaps = 8/150 (5%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL 216
           A L + YG GLR SE   L   +I   +  + + +GK  K R   L P +   + EY+  
Sbjct: 148 AALGISYGAGLRASEVCHLKVVDIDSGRMLIHVDEGKNGKDRKAMLSPGLLDLLREYW-- 205

Query: 217 CPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
               L    +  LF G  +  PL+P    R     +   G+    T HTLRHSFATHLL 
Sbjct: 206 ----LEARPEGWLFPGKPKINPLSPRQLNRAFTSAKHMAGINKPATLHTLRHSFATHLLE 261

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            G D+R IQ +LGH +LSTT  YT+V +K 
Sbjct: 262 AGTDVRVIQVLLGHSKLSTTARYTHVAAKT 291


>gi|160874836|ref|YP_001554152.1| integron integrase [Shewanella baltica OS195]
 gi|160860358|gb|ABX48892.1| integron integrase [Shewanella baltica OS195]
 gi|315267074|gb|ADT93927.1| integron integrase [Shewanella baltica OS678]
          Length = 319

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 133/309 (43%), Gaps = 58/309 (18%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RG S  T +SY    + F+ F      E +  + + Q        F++ +R   I  + +
Sbjct: 18  RGYSIRTEKSYLYWIKAFINFHHKRHPETMGTEEVAQF-----LTFLANQRNVAINTQKI 72

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
             +       L YL ++ +  E   L      K   LP  L+  + ++L+ N L      
Sbjct: 73  ALNA------LAYLYQKHLHHELGNLGFCYATKQRYLPTVLSPSE-ISLILNEL------ 119

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR--------- 198
               D R+  I+  LYG GLR+SE L L  Q+I  +Q++L ++ GKG K R         
Sbjct: 120 ----DGRDRLIIERLYGSGLRVSECLRLRIQDIDIEQASLTVRDGKGHKDRQTILSHKCA 175

Query: 199 ---------------------IVPLLPSV--RK---AILEYYDLCPFDLNLNIQLPLFRG 232
                                I P LP+   RK   A  ++  +  F        P    
Sbjct: 176 IKLTAYINKAMEIQHRDNQQGIGPSLPNALERKYPHAFKQHGWMFIFPSTTTCINPYTGT 235

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +    L+  V ++ +    R + +    T HT RHSFATHLL +G D+RS+Q +LGH  +
Sbjct: 236 LCRHHLHQSVIRKALGNAVRNIKITKRVTCHTFRHSFATHLLQSGSDIRSVQELLGHNDV 295

Query: 293 STTQIYTNV 301
           STTQIYT+V
Sbjct: 296 STTQIYTHV 304


>gi|313676041|ref|YP_004054037.1| integrase family protein [Marivirga tractuosa DSM 4126]
 gi|312942739|gb|ADR21929.1| integrase family protein [Marivirga tractuosa DSM 4126]
          Length = 372

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 132/287 (45%), Gaps = 36/287 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + Q LE++R      L++ E  T  F  F   +   K+       +  T+I+ ++   
Sbjct: 103 EAYFQKLELKR----YALKTAENYTACFDRFKRHFPTRKLM-----SIDETDIKNYLKGL 153

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +K  D  +  S++ IK + + ++       +   ++    K+  LP  L++++ + ++
Sbjct: 154 AQRKYSDSFVNLSINSIKFYYEVVE----GMPNRFYDIERPMKTERLPEILSKEEVIAMI 209

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197
           +          K  + ++  I+ +LY  GLR  E L+L   +I   + T+R+ QGKG K 
Sbjct: 210 N----------KTFNIKHQCIISILYSSGLRRGELLNLKLSDIDGKRMTIRVEQGKGKKD 259

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYL 254
           R          +IL    L    L      P   LF G +G+P +    ++ + +  +  
Sbjct: 260 RY---------SILSEKLLLKLRLYYKQYKPTHYLFEGKKGQPYSGSSVRQIVAKAAKNA 310

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            +      H LRHSFATHLL  G DLR IQ +LGH    TT+IYT+V
Sbjct: 311 NINKPVRPHMLRHSFATHLLEAGTDLRHIQLLLGHNSTKTTEIYTHV 357


>gi|227539179|ref|ZP_03969228.1| integrase/recombinase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227240861|gb|EEI90876.1| integrase/recombinase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 357

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 131/284 (46%), Gaps = 30/284 (10%)

Query: 26  EIERGLSKLTLQSYECDT-RQFLIFLA--FYTEEKITIQTIRQLSYTEIRAFI-SKRRTQ 81
           E +R    L +++Y  +T + +++  A   Y  + + + +   L Y  +RA+I     T 
Sbjct: 84  EFQRMKEVLQMKAYSPNTIKTYMVEFAQLLYVVKDVPVDS---LGYDRLRAYILYCINTL 140

Query: 82  KIGDRSLKRSLSGIK-SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           KI +  L   L+ IK  F + L K     E     +   K+ ++LP+ L++K+   + + 
Sbjct: 141 KISESQLHSRLNAIKFYFEQVLHKPDFFAE-----IPRPKRRSTLPKVLSQKEVKRIFNT 195

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRI 199
           V           + ++  +L L YG GLR+SE ++L   +I   +  + I+ GKG K R 
Sbjct: 196 VR----------NRKHLLMLQLCYGMGLRVSEVVNLKVSDIDSGRMQVLIEAGKGKKDRY 245

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPL  +V   + EYY           +  LF G  G   +    Q   +   +   +   
Sbjct: 246 VPLPTAVLDLLREYYK------AYRPKTYLFEGQYGGRYSVRSVQAVFKNAMKAAKVNRP 299

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              H LRHS+ATHLL  G D+  IQ +LGH  + TT +Y  V +
Sbjct: 300 IGIHGLRHSYATHLLEYGTDISFIQQLLGHNDIKTTMLYAKVGN 343


>gi|149200531|ref|ZP_01877542.1| Integron integrase [Lentisphaera araneosa HTCC2155]
 gi|149136380|gb|EDM24822.1| Integron integrase [Lentisphaera araneosa HTCC2155]
          Length = 415

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 132/297 (44%), Gaps = 72/297 (24%)

Query: 49  FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKI 107
           +L F+ E +   Q        E+ +FIS    QK +   +  ++ + +  F +Y+ + ++
Sbjct: 132 YLDFHKEGEFDAQ--------EVSSFISHLAVQKCVAASTQNQAFNALVFFFRYVLEIEL 183

Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI----LYLL 163
              S   ++R ++K   LP               L++T  E K I A    +      L+
Sbjct: 184 GDLSQ--SVRAVRKEK-LP---------------LVYTRDEVKAIMANMEGVPLLMARLI 225

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILE---------- 212
           YG GLR SEA  L  +++   +  L I+G KGDK R VPL  S+  AI E          
Sbjct: 226 YGGGLRHSEAYRLRIKDLDRGRMCLTIRGAKGDKDREVPLGKSLLPAIDEQLERIRKLYD 285

Query: 213 ----------------------------YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                                       ++ L P D NL++  P    IR   ++     
Sbjct: 286 EDRTNDVAGCYLPHTLENKSPNVGKEWGWFWLFPAD-NLSLD-PRANKIRRHHVSSNYLN 343

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              ++  R  G+  + T HTLRHSFATH+L +G D+R +Q +LGH  +STTQIYT+V
Sbjct: 344 GPYKKALRKAGIVKAGTVHTLRHSFATHILEDGYDIRVLQELLGHSDVSTTQIYTHV 400


>gi|206895665|ref|YP_002247136.1| site-specific integrase/recombinase XerD protein [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738282|gb|ACI17360.1| site-specific integrase/recombinase XerD protein [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 289

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 125/288 (43%), Gaps = 48/288 (16%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L++E + WL    + +  S  T++SY  D   FL F             + Q   T+I  
Sbjct: 22  LVEEYEQWLV---LRKQASPRTVRSYLKDVDDFLAF-------------VEQERSTDIEL 65

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F      + +   ++ R LS + SF  +L+++ I  E     ++  +K   +P   N   
Sbjct: 66  FKQFLHDKGLSPSTVARKLSAVSSFSAFLRRQGIALEFERPKVKIPQKLMQVP---NWND 122

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              LVD V     HE +         L ++  CGLR SE L L   +I DD   +R  GK
Sbjct: 123 LDQLVDEV---QDHEVR-------LALRMMLHCGLRASEVLELRWSDIGDDYMLVR--GK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R++P+  ++R  I        +         +F   +GK  +     R  R     
Sbjct: 171 GGKQRMLPVSEAIRTDIESIKRKGSY---------VFCDKKGKKRSRVWLWRKTRAF--- 218

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               L T  H LRH+FAT  L+N  D+R +Q  LGH  ++TTQ YT+V
Sbjct: 219 ----LGTHPHILRHAFATE-LTNYADIRVVQESLGHSDITTTQRYTHV 261


>gi|254450213|ref|ZP_05063650.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264619|gb|EDY88889.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 315

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 76/150 (50%), Gaps = 8/150 (5%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL 216
           A L + YG GLR SE   L   +I   +  + + +GK  K R   L P +   + EY+  
Sbjct: 148 AALGISYGAGLRASEVCHLKVVDIDSGRMLIHVDEGKNGKDRKAMLSPGLLDLLREYW-- 205

Query: 217 CPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
               L    +  LF G  +  PL+P    R     +   G+    T HTLRHSFATHLL 
Sbjct: 206 ----LEARPEGWLFPGKPKINPLSPRQLNRAFTSAKHMAGINKPATLHTLRHSFATHLLE 261

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            G D+R IQ +LGH +LSTT  YT+V +K 
Sbjct: 262 AGTDVRVIQVLLGHSKLSTTARYTHVAAKT 291


>gi|91200146|emb|CAJ73190.1| similar to site-specific tyrosine recombinase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 357

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 133/311 (42%), Gaps = 60/311 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRS 87
           R  S+ T Q+Y    ++F+ F          ++   +++  EI  F++     +K+   +
Sbjct: 29  RHYSRRTEQTYCHWVKRFIFFHK--------VRHPAEMAEPEINDFLTHLAVKEKVSAST 80

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++LS +    +++  R++     ++  R   K   LP  +   +   ++ N+      
Sbjct: 81  QNQALSALLFLYRHVIGREVGDLGKVIRAR---KPTRLPVVMTRDEVKAVLSNL-----S 132

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV------ 200
           E KW+      I  L+YG GLR+ E L L  Q+I   ++ + ++ GKG K RI       
Sbjct: 133 EDKWL------IASLMYGAGLRLMECLRLRVQDIDFSRNEILVRDGKGAKDRITMLPELL 186

Query: 201 --PLLPSVRK--------------------AILEYYDLCPFDLNLNIQLPLFRGIRGKP- 237
             PL   +RK                    A+   Y   P D       P     +    
Sbjct: 187 KKPLQDHLRKVKAIHEKDLAEGWGRVQMPDALDRKYPNAPADWRWQWVFPQENRWKNTKT 246

Query: 238 -------LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
                  ++  + QR +++     G+    + HT RHSFATHLL +G D+R+IQ +LGH 
Sbjct: 247 TEEGRHHMDESIMQRTVKEAVTSSGITKRASCHTFRHSFATHLLESGYDIRTIQELLGHK 306

Query: 291 RLSTTQIYTNV 301
            + TT IYT+V
Sbjct: 307 DVKTTMIYTHV 317


>gi|60550189|gb|AAX24191.1| integrase [Xanthomonas campestris pv. begoniae]
 gi|60550194|gb|AAX24195.1| integrase [Xanthomonas campestris pv. begoniae]
          Length = 339

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/177 (35%), Positives = 90/177 (50%), Gaps = 37/177 (20%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAI---------L 211
           L YG G+R+ E L L   ++   +  + ++ GKG K R VPL  S+RKA+         +
Sbjct: 141 LPYGSGMRMMECLRLRIMDVDAARGEMLVRDGKGGKDRRVPLPHSLRKALQRKRERALLV 200

Query: 212 EYYDLC--------PFDL-----NLNIQ------LPLFRGIR----GKP----LNPGVFQ 244
              DL         P  L     N +++       P  R  R    G+P    ++  + Q
Sbjct: 201 HVADLAAGAGRVFLPHALARKYPNADVEPGWQYLFPSARRSRDPRSGRPGRHHVSEEILQ 260

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R ++  R+  G+    T HTLRHSFATHLL  G D+R++Q +LGH  +STTQIYT+V
Sbjct: 261 RAVQSARQQAGIVKPATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVSTTQIYTHV 317


>gi|307705945|ref|ZP_07642775.1| tyrosine recombinase xerD [Streptococcus mitis SK597]
 gi|307620500|gb|EFN99606.1| tyrosine recombinase xerD [Streptococcus mitis SK597]
          Length = 295

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 131/287 (45%), Gaps = 24/287 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L   +  + LS  T+++Y+ D  QF      Y  +           Y  + ++I +   
Sbjct: 9   YLDYCKTHKRLSSHTIRAYKNDLMQF------YNSD-----------YDNVESYIEQLTR 51

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALN----EKQAL 135
             I   +L+R ++ +K F  YLK + I  E+    +R   +    LP+ +     +   +
Sbjct: 52  SNIKTNTLRRKIACMKVFYNYLKYQNIIEENPFNQLRFQFRTEKVLPKTIPYDILKSIFI 111

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L   V++  +   K    RN  I+ LL   G+RISE   +  ++I     TL I GKG 
Sbjct: 112 YLEQKVIVSKTDYQKQHAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLHIIGKGK 171

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RI+ L       +LE Y     + + +   P    +  KPL+    +  I+++     
Sbjct: 172 KERILFLGDQKTFNLLETYINKTRNESNDFLFPGKHSL--KPLSEQSVRLVIKRIVEQNN 229

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              + T H  RHSFAT LL +  D+R IQ ILGH  +S TQIYT+V+
Sbjct: 230 FSRTITPHMFRHSFATMLLDSDVDIRYIQQILGHSSISITQIYTHVS 276


>gi|34557587|ref|NP_907402.1| integrase-recombinase protein XERCD family [Wolinella succinogenes
           DSM 1740]
 gi|34483304|emb|CAE10302.1| INTEGRASE-RECOMBINASE PROTEIN XERCD FAMILY [Wolinella succinogenes]
          Length = 363

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 118/238 (49%), Gaps = 21/238 (8%)

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI----LNMRNL-----KKSNSLPRALN 130
           T  + D S K     + SF  Y+ K+    + N     + ++N      K    LP  +N
Sbjct: 111 TSGLSDASKKNHRIALLSFFGYIDKQNQDDQGNSHLFRIELKNWGGLRGKSGEKLPAYMN 170

Query: 131 EKQALTLVDNVLLHTSHETKW-IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-- 187
           EK+    ++ +    S+E    I ARN  ++ L+   G+R+SEAL L  ++ + DQ +  
Sbjct: 171 EKELERFLEAL---DSYEFSLDIRARNRLVIKLILYTGIRVSEALGLRLKDFLPDQDSYL 227

Query: 188 LRIQGKGDKIRIVPLLPS-VRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQR 245
           L+I+GKG+K R+V +    ++K + E+  +     +LN Q   LF   +G  L      R
Sbjct: 228 LKIRGKGNKERMVMVKKEPIQKELDEWLGVRQ---SLNAQEDWLFCNQKGGRLTQAYVSR 284

Query: 246 YIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            + Q+  + G+      AH LRHSFAT L     DL  +Q  LGH  L+T++IYT+ +
Sbjct: 285 IVEQILLWAGIRKEKNGAHMLRHSFATLLYQKKRDLVLVQEALGHADLNTSRIYTHFD 342


>gi|114047627|ref|YP_738177.1| integron integrase [Shewanella sp. MR-7]
 gi|113889069|gb|ABI43120.1| integron integrase [Shewanella sp. MR-7]
          Length = 319

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 109/239 (45%), Gaps = 47/239 (19%)

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           L YL ++ +  E   L      K   LP  L+  + ++L+ N L          D R+  
Sbjct: 77  LAYLYQKHLHHELGDLGFCYATKQRHLPTVLSPSE-ISLILNEL----------DGRDKL 125

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR------------------- 198
           I+ LLYG GLR+SE L L  Q+I  ++++L ++ GKG K R                   
Sbjct: 126 IIELLYGSGLRVSECLRLRIQDIDIERASLSVRDGKGHKDRQTILSHRCAEKLTTYIEKA 185

Query: 199 -----------IVPLLPSV--RK---AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
                      I P LP+   RK   A  ++  +  F  +     P    +    L+  V
Sbjct: 186 IKTQQNDNLRGIGPSLPNALERKYPNAFRQHGWMFIFPSSTTCINPYTGTLCRHHLHQSV 245

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            ++ +    R + +    T HT RHSFATHLL  G D+RS+Q +LGH  +STTQIYT+V
Sbjct: 246 IRKALGNAVRNIQMNKRVTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVSTTQIYTHV 304


>gi|332670451|ref|YP_004453459.1| integrase family protein [Cellulomonas fimi ATCC 484]
 gi|332339489|gb|AEE46072.1| integrase family protein [Cellulomonas fimi ATCC 484]
          Length = 340

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 104/227 (45%), Gaps = 10/227 (4%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           +++R +  ++ F+++L+     T   +L +   ++   LP   ++ + L L         
Sbjct: 87  TVQRRVGTLRLFVRWLQMEGHLTGDPMLRIEAPERPVRLPAGWDDAELLRLAKVAWEVAP 146

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLL 203
            + +   AR+ A   LL   G+R SE  SLT +++    D ++ L + GKG++ R VP+ 
Sbjct: 147 GDRRRWPARDRAAFALLSTTGVRASELCSLTDRSLRVEDDGEAVLTVIGKGNRQRNVPVP 206

Query: 204 PSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-- 258
           P   + + EY  +   D          PL R   G+PL  G     +    R  G+    
Sbjct: 207 PEALRVVEEY--MAERDERFGPPEHGAPLLRLSSGRPLQRGALNHLVDGWIRRSGVAKQE 264

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
              AH  RH+FA  L+ +G    ++QS+LGH  L TT IY    + +
Sbjct: 265 GEAAHGFRHTFAKGLIRSGVPAPAVQSLLGHEDLKTTGIYVKATAAD 311


>gi|254436771|ref|ZP_05050265.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198252217|gb|EDY76531.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 290

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 79/150 (52%), Gaps = 10/150 (6%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYY-D 215
           A L + YG GLR SE  SL   +I  D+  + + +GKG K R V L P +   + +Y+ +
Sbjct: 123 AALSISYGAGLRASEVCSLKVSDIDSDRMLIHVDEGKGGKDRKVMLSPDLLDLLRDYWRE 182

Query: 216 LCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
             P          LF G  +  P++     R     +  +G+    T HTLRHSFATHLL
Sbjct: 183 AQPAGW-------LFPGKPKINPISARQLSRAFNSAKHVVGISKPATLHTLRHSFATHLL 235

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
               D+R IQ +LGH +LSTT  YT+V +K
Sbjct: 236 EANIDVRVIQVLLGHAKLSTTARYTHVATK 265


>gi|225377377|ref|ZP_03754598.1| hypothetical protein ROSEINA2194_03025 [Roseburia inulinivorans DSM
           16841]
 gi|225210778|gb|EEG93132.1| hypothetical protein ROSEINA2194_03025 [Roseburia inulinivorans DSM
           16841]
          Length = 340

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 137/294 (46%), Gaps = 25/294 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK---ITIQTIRQLSYTEIRAF-ISKRRT 80
           L I+R LS  ++ +Y  DT  F + L FY  EK     + T+  L+  +I  F +  ++ 
Sbjct: 20  LPIQRNLSPNSIATYR-DT--FRLLLLFYDTEKHIKPNLLTLDMLNVQQIEDFMLWLKKE 76

Query: 81  QKIGDRSLKRSLSGIKSFLKYLK----KRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           +  G  +  + L  +KSF +YL+       +  + N L +R +K+     + L       
Sbjct: 77  RNCGASTCNQRLGALKSFFRYLQFALPDCALQCQEN-LAIRPMKQPEPGLKYLTIDGIKL 135

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGD 195
           L++   + T +       R+ AIL L+Y  G R+ E   +   +I     +T+RI GKGD
Sbjct: 136 LLEQPDIKTKY-----GRRDLAILSLMYDTGARVQEIADIKIVHIRFSAPATIRITGKGD 190

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN----PGVFQRYIRQLR 251
           K R+VPLL      + +Y      D   N    LF+   G+ L+      +  +Y    R
Sbjct: 191 KTRVVPLLSRTEDILKQYIKDFKIDAGGNDAY-LFQNRSGQQLSRFGISYILTKYADMAR 249

Query: 252 RYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +     +P   + H +RHS A HLL    +L  I+ +LGH  ++TT+IY   ++
Sbjct: 250 KVHPELIPEKLSPHCIRHSKAMHLLQANVNLVYIRDLLGHSSVTTTEIYARADT 303


>gi|254449557|ref|ZP_05062994.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198263963|gb|EDY88233.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 315

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 76/150 (50%), Gaps = 8/150 (5%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL 216
           A L + YG GLR SE   L   +I   +  + + +GK  K R   L P +   + EY+  
Sbjct: 148 AALGISYGAGLRASEVCHLKVVDIDSGRMLIHVDEGKNGKDRKAMLSPGLLDLLREYW-- 205

Query: 217 CPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
               L    +  LF G  +  PL+P    R     +   G+    T HTLRHSFATHLL 
Sbjct: 206 ----LEARPEGWLFPGKPKINPLSPRQLNRAFTSAKHMAGINKPVTLHTLRHSFATHLLE 261

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            G D+R IQ +LGH +LSTT  YT+V +K 
Sbjct: 262 AGTDVRVIQVLLGHSKLSTTARYTHVATKT 291


>gi|13509250|emb|CAC35342.1| integrase [Vibrio salmonicida]
          Length = 320

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/182 (35%), Positives = 89/182 (48%), Gaps = 46/182 (25%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSVRKAILEYYDL 216
           LLYG G+R+ E L L  Q+I  D + +RI  GKG K R+V     L+P +R  I     L
Sbjct: 128 LLYGSGMRLMEVLRLRIQDIDFDYNCVRIWDGKGGKNRVVTLAGELIPQIRTQI----QL 183

Query: 217 CPFDLNLNIQLPLFRGIRGKPL--------NPGVFQRYI------------RQLRRY--- 253
               L L++  PLF G+    L        N  +  +Y+            +QLRR+   
Sbjct: 184 VDNYLQLDLNNPLFCGVYMPHLLRKKYPNHNKQLGWQYLFPSYKLSIDPESKQLRRHHID 243

Query: 254 --------------LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                           +    T HTLRHSFATHLL +G D+R++Q+ LGH  + TTQIYT
Sbjct: 244 EKQLQRAVKKAAFNAHINKHVTPHTLRHSFATHLLQSGADIRTVQTQLGHSDIRTTQIYT 303

Query: 300 NV 301
           +V
Sbjct: 304 HV 305


>gi|66044739|ref|YP_234580.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
 gi|63255446|gb|AAY36542.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 320

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 130/289 (44%), Gaps = 28/289 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W  NL+  R     T ++Y+ D   F  F+       ++    R ++ + + A+ ++   
Sbjct: 32  WFANLDNPR-----TRRAYQNDLEDFCGFVGL-----VSADEFRVVTRSHVLAWRAQLEH 81

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVD 139
           + +   +++R L+ + S   +L       ESN +   N       P+   NE +   L D
Sbjct: 82  RGLAGATIRRKLAALASLFDHL------LESNAIAGGNPVHGVKRPKIESNEGKTPALGD 135

Query: 140 N---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194
           +    LL    ET     R+ AIL +L   GLR  EA  L   +I + +    L++ GKG
Sbjct: 136 HQAKALLDAPDETTLKGQRDRAILAVLLYHGLRREEAALLQVSDIQERRGIQHLKVHGKG 195

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL---- 250
            K+R +PL P     I  + +     L  + ++PLF  +RGK    G+    I  +    
Sbjct: 196 GKVRYLPLHPVAAGRIHLFLESSGHHL-ADRKVPLFMPLRGKLTGAGITANGIYTVVAAY 254

Query: 251 RRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            +  G+ +     H LR + AT+ L +  D+  +Q+ LGH  +STT+IY
Sbjct: 255 AKKAGIEVDGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303


>gi|319425156|gb|ADV53230.1| integron integrase [Shewanella putrefaciens 200]
          Length = 319

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 136/309 (44%), Gaps = 58/309 (18%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RG S  T ++Y    + F+ F      +K   +T+     T+   F++ +R   I  + +
Sbjct: 18  RGYSIRTEKTYLYWIKAFINF-----HDKRHPETMGTEEVTQFLTFLANQRNVAINTQKI 72

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
             +       L YL ++ +  E   L      K   LP  L+  + ++L+ N L      
Sbjct: 73  ALNA------LAYLYQKHLHHELGDLGFCYATKQRHLPTVLSPLE-ISLILNEL------ 119

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR--------- 198
               D R+  I+ LLYG GLR+SE L L  Q+I  ++++L ++ GKG K R         
Sbjct: 120 ----DGRDRLIIELLYGSGLRVSECLRLRIQDIDIERASLTVRDGKGHKDRQTILSHRCA 175

Query: 199 ---------------------IVPLLPSV--RK---AILEYYDLCPFDLNLNIQLPLFRG 232
                                I P LP+   RK   A  ++  +  F  +     P    
Sbjct: 176 EKLTTYIEKAIKIQQNDNQQGIGPSLPNALERKYPNAFRQHGWMFIFPSSTTCINPYTGT 235

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +    L+  V ++ +    R + +    T HT RHSFATHLL  G D+RS+Q +LGH  +
Sbjct: 236 LCRHHLHQSVIRKALGNAVRNIQMNKRVTCHTFRHSFATHLLQAGRDIRSVQELLGHNDV 295

Query: 293 STTQIYTNV 301
           STTQIYT+V
Sbjct: 296 STTQIYTHV 304


>gi|114762822|ref|ZP_01442254.1| tyrosine recombinase XerD [Pelagibaca bermudensis HTCC2601]
 gi|114544432|gb|EAU47439.1| tyrosine recombinase XerD [Roseovarius sp. HTCC2601]
          Length = 141

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/129 (40%), Positives = 71/129 (55%), Gaps = 22/129 (17%)

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-- 245
           L I+GKG K R+VPL P  R+A+  +   C      + Q    R  +GKP +P +F    
Sbjct: 2   LLIRGKGGKERMVPLSPPAREALAAWL-AC-----RDAQDEAGRA-KGKPGSPHLFPSRG 54

Query: 246 ------------YIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                        I+ +    G+ P   T HTLRH+FATHLL NG DLR+IQ+ LGH  +
Sbjct: 55  KAGHLTRHAFYLQIKDMAVRAGVSPAKVTPHTLRHAFATHLLQNGADLRAIQTFLGHADV 114

Query: 293 STTQIYTNV 301
           +TT+IYT+V
Sbjct: 115 ATTEIYTHV 123


>gi|330448031|ref|ZP_08311679.1| integron integrase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492222|dbj|GAA06176.1| integron integrase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 321

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 117/249 (46%), Gaps = 52/249 (20%)

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           ++L  I    +Y+ +++I+     L   N K    LP  L+  +   + +N+    + E 
Sbjct: 71  QALCAIIFLYRYVVRKEISN----LKYHNAKLPKRLPTVLSNNEVTAIFNNL----TGEY 122

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVP--LLP 204
           K I         +LYGCGLRI+EALSL  ++I  +  ++ I   +G+ D+  ++P  ++ 
Sbjct: 123 KLIAG-------ILYGCGLRINEALSLRIKDINFESKSIFIFNSKGRKDRYTLLPNTIIT 175

Query: 205 SVRKAILEYYDLCPFDLN-----LNIQLPLFRGIRG------------------------ 235
            ++K I     +   DL+      ++   L+R  +G                        
Sbjct: 176 PLKKQIEYVKRIHSDDLHHGYGTASVPTALYRKYQGALKLCGWQYIFPSKHRCTHPYDGY 235

Query: 236 ---KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                L+   F +++ +  +   +    TAHT RHSFAT LL NG D+R++Q +LGH  +
Sbjct: 236 ICRHHLHVSAFSKHLHRAAKLSQIDKRVTAHTFRHSFATRLLENGTDIRTVQELLGHTDI 295

Query: 293 STTQIYTNV 301
            TT+IYT+V
Sbjct: 296 RTTEIYTHV 304


>gi|312621789|ref|YP_004023402.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202256|gb|ADQ45583.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 286

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 142/296 (47%), Gaps = 26/296 (8%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +LKE +++L+     +  ++ T++SY  D   F+ +    T ++   + + +    E ++
Sbjct: 1   MLKEFEDYLKT----QDFTENTIKSYTKDVELFMRWYVDTTGQEFLPENLTEFDLVEYKS 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS--NSLPRALNE 131
           ++ ++  +     ++ RS+  ++ F+ +L  R +  +     ++ +K +  N  P  L++
Sbjct: 57  YLLRKNHKP---STVNRSIISLRKFVHFLLDRGLLNKDISTRLKQVKDTTRNLSPVVLDK 113

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLR 189
           K        V  H   +T     R+ A + LL   G+RISEA++L  ++  I + +  ++
Sbjct: 114 KDIYKFRRTV--HQFGKT-----RDVAFVELLLNTGMRISEAINLKLEDVEISERKGKVK 166

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           I GKG   R VPL    RK + EY    P+ + N      LF    GK L      + I+
Sbjct: 167 IWGKGRSYREVPLNSDARKYLSEYLKKRPYSETNY-----LFVTSTGKKLTRNSAYKIIQ 221

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +  +  GL L    H LRH FA  L+  G ++  +Q +LGH R+ TT  Y   N+K
Sbjct: 222 KYAKLAGLCLH--PHMLRHFFAQTLIDKGLNIYDVQQLLGHQRIETTLRYKKPNTK 275


>gi|319427384|gb|ADV55458.1| integron integrase [Shewanella putrefaciens 200]
          Length = 319

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 134/309 (43%), Gaps = 58/309 (18%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RG S  T ++Y    + F+ F       K   +T+     T+   F++ +R   I  + +
Sbjct: 18  RGYSIRTEKTYLYWIKAFINF-----HNKRHPETMGTEEVTQFLTFLANQRNVAINTQKI 72

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
             +       L YL ++ +  E   L      K   LP  L+  + ++L+ N L      
Sbjct: 73  ALNA------LAYLYQKHLHHELGDLGFCYATKQRHLPTVLSPSE-ISLILNEL------ 119

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR--------- 198
               D R+  I+ LLYG GLR+SE L L  Q+I  + ++L ++ GKG K R         
Sbjct: 120 ----DGRDRLIIELLYGSGLRVSECLRLRIQDIDIESASLTVRDGKGHKDRQTILSHRCA 175

Query: 199 ---------------------IVPLLPSV--RK---AILEYYDLCPFDLNLNIQLPLFRG 232
                                I P LP+   RK   A  ++  +  F  +     P    
Sbjct: 176 EKLTTYIEKAIKIQQNDNQQGIGPSLPNALARKYPNAFRQHGWMFIFPSSTTCINPYTGT 235

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +    L+  V ++ +    R + +    T HT RHSFATHLL  G D+RS+Q +LGH  +
Sbjct: 236 LCRHHLHQSVIRKALGNAVRNIQMNKRVTCHTFRHSFATHLLQAGRDIRSVQELLGHNDV 295

Query: 293 STTQIYTNV 301
           STTQIYT+V
Sbjct: 296 STTQIYTHV 304


>gi|253990782|ref|YP_003042138.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253990786|ref|YP_003042142.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211639116|emb|CAR67728.1| Similar to integrase/recombinase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211639122|emb|CAR67734.1| Phage integrase [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253782232|emb|CAQ85396.1| similar to phage integrase/recombinase [Photorhabdus asymbiotica]
 gi|253782236|emb|CAQ85400.1| similar to phage integrase/recombinase [Photorhabdus asymbiotica]
          Length = 376

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 135/312 (43%), Gaps = 28/312 (8%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFL---AFYTEEKITIQTIRQLSYTEIRAFISKRRT--QK 82
           ER  S+ TL+     T +F+++      Y    IT   + +      R     R+T  + 
Sbjct: 44  ERNWSETTLKVQTHHTYRFILWATERGLYYAADITRPILERYQ----RYLYQYRKTNGEP 99

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL----NEKQALTLV 138
           +  R+ +  L  +K + K+L K+ +   +   ++   +    LPR +      +Q L   
Sbjct: 100 LSTRTQRTQLEPLKVWFKWLTKQNLILANPAADLELPRLEKHLPRYILTIDETEQILAQP 159

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197
           D   L           R+ A++ LL+  G+R  E   L   ++   + T+ I QGKG+K 
Sbjct: 160 DLTTLQ--------GVRDRALMELLWSTGMRRGELTRLDVYSVDGSRKTVTIRQGKGNKD 211

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRG-KPLNPGVFQRYIRQLRRYLG 255
           R++PL       +  Y       L +N  +  LF  + G   L        +      +G
Sbjct: 212 RVLPLGERALSWLQRYQQQVRPQLIVNPDVKALFVAMDGLDGLQANGISNLVTAYINAVG 271

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +      H  RH+ AT +L NG DLR IQ++LGH  + +TQ+YT V+ +     +  ++ 
Sbjct: 272 IEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRA----LQAVHA 327

Query: 316 QTHPSITQKDKK 327
            THP+    D+K
Sbjct: 328 STHPAEQMADEK 339


>gi|254462175|ref|ZP_05075591.1| phage integrase [Rhodobacterales bacterium HTCC2083]
 gi|206678764|gb|EDZ43251.1| phage integrase [Rhodobacteraceae bacterium HTCC2083]
          Length = 295

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 77/153 (50%), Gaps = 14/153 (9%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL 216
           A L + YG GLR SE  +L   +I  D+  + + +GK DK R   L P     + +Y+  
Sbjct: 128 AALGISYGAGLRASEVCNLKISDIDSDRMLIHVDEGKNDKDRKAMLSPGSLDLLRDYWR- 186

Query: 217 CPFDLNLNIQLPLFRGIRGKP----LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                    +  LF G   KP    L+P    R     +   G+    T HTLRHSFATH
Sbjct: 187 -----EARPEGWLFPG---KPKIMALSPRQLNRAFTSAKHMAGINKPATLHTLRHSFATH 238

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           LL  G D+R IQ +LGH +LSTT  YT+V +K 
Sbjct: 239 LLEAGTDVRVIQVLLGHSKLSTTARYTHVATKT 271


>gi|77360404|ref|YP_339979.1| integrase [Pseudoalteromonas haloplanktis TAC125]
 gi|76875315|emb|CAI86536.1| putative integrase [Pseudoalteromonas haloplanktis TAC125]
          Length = 308

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/182 (35%), Positives = 89/182 (48%), Gaps = 46/182 (25%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSVRKAILEYYDL 216
           LLYG G+R+ E L L  Q+I  D + +RI  GKG K R+V     L+P +R  I     L
Sbjct: 116 LLYGSGMRLMEVLRLRIQDIDFDYNCVRIWDGKGGKNRVVTLAGELIPQIRTQI----QL 171

Query: 217 CPFDLNLNIQLPLFRGIRGKPL--------NPGVFQRYI------------RQLRRY--- 253
               L L++  PLF G+    L        N  +  +Y+            +QLRR+   
Sbjct: 172 VDNYLQLDLNNPLFCGVYMPHLLRKKYPNHNKQLGWQYLFPSYKLSIDPESKQLRRHHID 231

Query: 254 --------------LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                           +    T HTLRHSFATHLL +G D+R++Q+ LGH  + TTQIYT
Sbjct: 232 EKQLQRAVKKAAFNAHINKHVTPHTLRHSFATHLLQSGADIRTVQTQLGHSDIRTTQIYT 291

Query: 300 NV 301
           +V
Sbjct: 292 HV 293


>gi|253581279|ref|ZP_04858533.1| transposase [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847433|gb|EES75410.1| transposase [Ruminococcus sp. 5_1_39BFAA]
          Length = 285

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 129/294 (43%), Gaps = 28/294 (9%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           F + +E  N +++   +R L   T+ +Y      FL           T + I  L+  ++
Sbjct: 4   FIMYEEIFNQIRSAANKRNLKDSTIHAYCTSVAHFL---------NRTAKDIDALTTDDV 54

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
             F+++++   I   +     SGI+ F K + K+    +    ++  +K+   LP  L +
Sbjct: 55  DIFLTEKKLSGISPETYNHYHSGIRFFYKKILKKNWDDD----DIPRMKRDRKLPTVLTK 110

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            +   ++D             + ++ A++  +Y  GLR+SE   L   +I     T+ I+
Sbjct: 111 AEISAILDATP----------NLKHKAMIATMYSGGLRVSEVTHLHYDDISRTNKTIHIR 160

Query: 192 -GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GK    R   L     + + EY+  C       I  P      G  L      ++ R+ 
Sbjct: 161 DGKSRSDRYTLLADRTLEILTEYWFQCG--RPRGILFP--SSWTGDYLTKDSVIQFFRES 216

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
               G+    + H LRHSFA+HL  +G D++ IQ++LGH    +T+IY +V++K
Sbjct: 217 AERAGIQKHVSTHCLRHSFASHLFESGCDIKYIQALLGHRDPKSTEIYLHVSNK 270


>gi|86139634|ref|ZP_01058202.1| integrase/recombinase [Roseobacter sp. MED193]
 gi|85823817|gb|EAQ44024.1| integrase/recombinase [Roseobacter sp. MED193]
          Length = 306

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 78/157 (49%), Gaps = 22/157 (14%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV--------RK 208
           A L + YG GLR SE  +L   +I  D+  + ++ GKG K R V L P +        R+
Sbjct: 139 AALSISYGAGLRASEVCNLKISDIDSDRMLIHVELGKGQKDRKVMLSPGLLELLRAWWRE 198

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           A  E + L P    +N            P++P    R     +   G+    T HTLRHS
Sbjct: 199 ARPEGW-LFPGKPKIN------------PISPRQLSRAFTSAKHMAGVKKPATLHTLRHS 245

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           FATHLL    D+R IQ +LGH +L+TT  YT+V +K 
Sbjct: 246 FATHLLEANTDVRVIQVLLGHAKLTTTARYTHVATKT 282


>gi|262274250|ref|ZP_06052061.1| integron integrase IntI4 [Grimontia hollisae CIP 101886]
 gi|262220813|gb|EEY72127.1| integron integrase IntI4 [Grimontia hollisae CIP 101886]
          Length = 320

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/195 (33%), Positives = 94/195 (48%), Gaps = 41/195 (21%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210
           + A++  I  L+YG GLR+ EA+ L  +++  D   LRI  GKG K RIV L   ++  +
Sbjct: 118 VPAQHYLISALMYGSGLRLMEAVRLRVKDVDFDYQCLRIFDGKGGKSRIVTLATELQCPL 177

Query: 211 LEYYD-----LCPFDLN----LNIQLP------------------LF-----------RG 232
            +  D     LC  D+N      + +P                  LF           R 
Sbjct: 178 KQQIDQVNSILCR-DVNHHNYAGVWMPHRLRQKYASQSKSLPWQYLFPSHKVSIDPETRV 236

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           IR   +N    QR I    +   +    T HTLRHSFATHLL +G D+R++Q+ LGH  +
Sbjct: 237 IRRHHINEKQIQRSINTTAKKANIRKHVTPHTLRHSFATHLLQSGADIRTVQAQLGHSDV 296

Query: 293 STTQIYTNVNSKNGG 307
            TTQ+YT++  +NG 
Sbjct: 297 RTTQVYTHI-LQNGA 310


>gi|312195601|ref|YP_004015662.1| integrase family protein [Frankia sp. EuI1c]
 gi|311226937|gb|ADP79792.1| integrase family protein [Frankia sp. EuI1c]
          Length = 422

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 87/168 (51%), Gaps = 8/168 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAILE 212
           R++A+L LLYG G RISEA+ L   ++  DQ+T  +R++G   + R+VPL      A+  
Sbjct: 223 RSAALLELLYGTGARISEAVGLDLDDLDLDQATASVRLRGGNGRDRVVPLGRCAVAALSL 282

Query: 213 YYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           Y     P   +      +F   RG  L+       +R      G+    + H LRHSFA 
Sbjct: 283 YLSRGRPVLESAGSGTAVFLSRRGGRLSRQSAWSALRAAAEAAGI-EGVSPHVLRHSFAL 341

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HLL  G D+R +Q +LGH  + TTQIYT V +    D + E+Y   HP
Sbjct: 342 HLLDGGADVRVVQELLGHASVRTTQIYTLVPA----DQLREVYAAAHP 385


>gi|310766353|gb|ADP11303.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 351

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 141/319 (44%), Gaps = 25/319 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF---- 74
           ++WL +L    G S  T+Q Y    R FL +      E   I+   Q+S   + ++    
Sbjct: 26  ESWLSHLAAA-GRSPRTVQGYGERVRAFLAWC-----EPRGIRYAPQVSLAVLESYQRWL 79

Query: 75  --ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNE 131
               K   +++   S    L+ I+   ++L +R +   +    +   K+   LP +  +E
Sbjct: 80  QGYRKADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFSE 139

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            +   ++ ++   T         RN AIL LL+  G+R SE   L   ++   +  + ++
Sbjct: 140 DETRRVLQSLDAGTP-----PGLRNRAILELLWSSGIRRSELAGLMLSDVDFTRGVVNVR 194

Query: 192 -GKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-R 248
            GKG K R+VP+  +    +  Y  D+ P          LF   +G  L  G       R
Sbjct: 195 RGKGGKERVVPVGHAALIWLGRYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGR 254

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            +R    L  +   H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V   +   
Sbjct: 255 AIRDGAHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGH--- 311

Query: 309 WMMEIYDQTHPSITQKDKK 327
            +  ++ QTHP+  ++  K
Sbjct: 312 -LQSVHAQTHPAEKRRTAK 329


>gi|50122330|ref|YP_051497.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|50122339|ref|YP_051506.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|49612856|emb|CAG76306.1| probable integrase/recombinase protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612865|emb|CAG76315.1| probable integrase/recombinase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 344

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/169 (34%), Positives = 84/169 (49%), Gaps = 7/169 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213
           RN A+L +L+  GLR SE   L   ++   +  L + QGKG+K R+VP+       +  Y
Sbjct: 158 RNRAVLEMLWSTGLRRSELSGLMLADVDVGRGVLVVRQGKGNKDRVVPVGLRALVWVQRY 217

Query: 214 YDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYLGLPLSTTAHTLRHSFAT 271
            D   P     +    LF  I GK L          R +R    L  +   H  RHS AT
Sbjct: 218 LDAVRPRLTTKHDSGYLFVTIWGKRLARSTLTILAGRAIRDDAHLKKAGACHVFRHSMAT 277

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
            +L  G D R IQ+ILGH +L TTQIYT V   +    + +++++THP+
Sbjct: 278 QMLERGADTRHIQAILGHEKLETTQIYTRVAIGH----LKQVHEKTHPA 322


>gi|295698025|ref|YP_003602682.1| putative Integrase/recombinase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295060137|gb|ADF64874.1| putative Integrase/recombinase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 325

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 108/217 (49%), Gaps = 20/217 (9%)

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR--ALNEKQALTLVDNVLLHTSHE 148
           +L G+      L+   + +  +I  +RNL+ S  LPR  AL  ++   L        S  
Sbjct: 102 ALKGVAKEAWMLRLMDVESFQHIRAVRNLRGSR-LPRGRALPPEEIRALFGACEADDSS- 159

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
              I  R++A+L ++ GCGLR SEA+ L   +I+ D+  LR+ GKG+K R+  +     +
Sbjct: 160 ---IGVRDAAMLGVILGCGLRRSEAVGLDLCDIVTDERALRVLGKGNKERLAYMPAGTWQ 216

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIR-------GKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            + ++ D    D+      PLF  IR        +  +  V+  ++ Q+R+ L       
Sbjct: 217 RLRKWID----DVRGEKDGPLFTRIRRFDTLTNDRLTDQTVY--HVLQVRQRLAGIAKCA 270

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            H LR +FAT +L NG DL +++  +GH  ++TTQ Y
Sbjct: 271 PHDLRRTFATSMLDNGEDLITVKDAMGHASVTTTQQY 307


>gi|325679322|ref|ZP_08158907.1| phage integrase, N-terminal SAM-like domain protein [Ruminococcus
           albus 8]
 gi|324108919|gb|EGC03150.1| phage integrase, N-terminal SAM-like domain protein [Ruminococcus
           albus 8]
          Length = 336

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 140/305 (45%), Gaps = 29/305 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF-----------YTEEKIT------IQT 62
           ++L  + + +G S  T+++Y  D R FL +L             + +  I+      I+ 
Sbjct: 15  DYLTYMRLVKGRSDRTVEAYYIDLRTFLRYLLINHNDADPNKVEFEDIAISEVPFDYIKK 74

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           IR +       +++  R   I  R+  R  S +K F  YL  +K    S+ +    L K 
Sbjct: 75  IRLIDAYNYLKWLADERGNSIKTRA--RKTSALKQFYSYLHLKKGLISSDPIEQLELPK- 131

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             LP+ L   + LTL D   L  + E+   + R+  ++ L   CG+R+SE   L   +I 
Sbjct: 132 --LPKTL--PKYLTLGDAQKLLAAVESANYE-RDYCMITLFLNCGMRLSELCGLNTDDIS 186

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
            +  T+R+ GKG K RIV +  +  +A+  Y  L            LF   R   ++  +
Sbjct: 187 FENGTMRLFGKGSKERIVYMNDACVEALKAY--LPRRSAVQTTDKALFLSNRNTRISRRM 244

Query: 243 FQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTN 300
            Q  + +  +  GL  L  T H LRH+ AT +   G  D   ++ ILGH  L+TT+IYT+
Sbjct: 245 TQYIVEESLKKAGLGNLGITTHKLRHTAATLMYQYGNVDTLVLKDILGHESLATTEIYTH 304

Query: 301 VNSKN 305
           + S+N
Sbjct: 305 LTSQN 309


>gi|146297605|ref|YP_001181376.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145411181|gb|ABP68185.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 286

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 142/296 (47%), Gaps = 26/296 (8%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +LKE + +L+     +  ++ T++SY  D   F+ +    T ++   + + +    E ++
Sbjct: 1   MLKEFEEYLKT----QDFTENTIKSYTKDVELFMRWYVDTTGQEFLPENLTEFDLVEYKS 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS--NSLPRALNE 131
           ++ ++  +     ++ RS+  ++ F+ +L  R +  +     ++ +K +  N  P  L++
Sbjct: 57  YLLRKNHK---PSTVNRSIISLRKFVHFLLDRGLLNKDISTRLKQVKDTTRNLSPVVLDK 113

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLR 189
           K        V  H   +T     R+ A++ LL   G+RISEA++L  ++  I + +  ++
Sbjct: 114 KDIYKFRRTV--HQFGKT-----RDVALVELLLNTGMRISEAINLKLEDVEISERKGKVK 166

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           I GKG   R VPL    RK + EY    P+ + N      LF    GK L      + I+
Sbjct: 167 IWGKGRSYREVPLNSDARKYLSEYLKKRPYSETNY-----LFVTSTGKKLTRNSAYKIIQ 221

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +  +  GL L    H LRH FA  L+  G ++  +Q +LGH R+ TT  Y   N+K
Sbjct: 222 KYAKLAGLCLH--PHMLRHFFAQTLIDKGLNIYDVQQLLGHQRIETTLRYKKPNTK 275


>gi|297618199|ref|YP_003703358.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297146036|gb|ADI02793.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 298

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 125/271 (46%), Gaps = 23/271 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           ++L+++SY  D R FL +L    E+  T  T   L  +E R F++ +  +     ++ R 
Sbjct: 31  ARLSVESYMGDLRLFLEWLGGRGEDNPTAVT--PLDASEYRRFLADKGYKPA---TINRK 85

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           +  +++F  +L++  I  ++     + +      PR L   +   L+  V          
Sbjct: 86  IQSLRAFYGWLQEAGIVPDNPFRRTKAVPAQELAPRWLTRPEQAALMRAVRAKGR----- 140

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRK 208
              R+ A++ L+   GL++ E ++L  ++++  + + ++   QGKG+K R VPL  + R 
Sbjct: 141 --LRDEAMIALMLFAGLKVGELVALEREDVVVRERSGKVVVRQGKGNKRREVPLNATARD 198

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            +  +       L  N   PL+   +G  L+    Q+ +     Y+      T H LRH+
Sbjct: 199 ILRRW-------LEENPTGPLWPSQKGGRLSKRQVQKIVEDCA-YIAKLKDVTCHKLRHT 250

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           F  +LL  G  +  + ++ GH RL  T+ YT
Sbjct: 251 FCKNLLDAGVSIDQVAAMAGHSRLDVTKRYT 281


>gi|159046242|ref|YP_001541914.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|157914001|gb|ABV95433.1| phage integrase [Dinoroseobacter shibae DFL 12]
          Length = 295

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 77/156 (49%), Gaps = 20/156 (12%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYD- 215
           A L + YG GLR +E  +L   +I  D+  + + QGKG K R V L P + + +  ++  
Sbjct: 128 AALSISYGAGLRAAEVCNLKIGDIDSDRMLIHVEQGKGQKDRKVMLSPGLLELLRAWWRE 187

Query: 216 ------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
                 L P    +N            P++P    R     +   G+    T HTLRHSF
Sbjct: 188 TRPEGWLFPGKPKIN------------PISPRQLNRAFTSAKHMAGVKKPATLHTLRHSF 235

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           ATHLL    D+R IQ +LGH +L+TT  YT+V +K 
Sbjct: 236 ATHLLEANTDVRVIQVLLGHAKLTTTARYTHVATKT 271


>gi|259909787|ref|YP_002650143.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224965409|emb|CAX56941.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 351

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 141/319 (44%), Gaps = 25/319 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++WL +L +  G S  T+Q Y    R FL +      E   I    Q+S   + A+    
Sbjct: 26  ESWLAHLVVA-GRSPRTVQGYRERVRAFLSWC-----EPRGITYAPQVSLAVLEAYQRWL 79

Query: 79  RTQKIGD------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNE 131
           +  +  D       S    L+ I+   ++L +R +   +    +   K+   LP +  +E
Sbjct: 80  QGYRRADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFSE 139

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            +   ++ ++   T         RN AIL LL+  G+R SE   L   ++   +  + ++
Sbjct: 140 AETRRVLQSLDAGTP-----PGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVR 194

Query: 192 -GKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-R 248
            GKG K R+VP+  +    +  Y  D+ P          LF   +G  L  G       R
Sbjct: 195 RGKGGKDRVVPVGHAALMWLGRYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGR 254

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            +R    L  +   H  RH+ AT +L NG D R IQ+ILGH +L TTQIYT V   +   
Sbjct: 255 AIREGAHLKKAGACHIFRHTMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGH--- 311

Query: 309 WMMEIYDQTHPSITQKDKK 327
            + +++  THP+  ++ +K
Sbjct: 312 -LQKVHAHTHPAEKRRTEK 329


>gi|169826676|ref|YP_001696834.1| hypothetical protein Bsph_1094 [Lysinibacillus sphaericus C3-41]
 gi|168991164|gb|ACA38704.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 280

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 129/274 (47%), Gaps = 33/274 (12%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           L+  T++ Y+   +Q    L  YTE     +   +++  +IR ++     +     S+K 
Sbjct: 20  LAPRTIRGYQLSVKQ----LQDYTE-----KPFNKITKKDIRHWMMVLNEKGYKQNSIKN 70

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L G+K+F +Y     +   +   ++   K + +LPR L++KQ   L+++V       T 
Sbjct: 71  KLIGLKTFYQYCFDEGLMIINPAKDIPFPKVAETLPRYLSKKQLTCLLEHVCERLYERT- 129

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKA 209
                   I+ +LY  G+RISE + +  ++I   + +++I +GKG++ RIV       + 
Sbjct: 130 --------IIEVLYATGVRISELVKIKKEDINWSERSIQILEGKGNRSRIVLFNLDCAQH 181

Query: 210 ILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           +  Y     D  P+   + +     R IR + +N  +FQ Y +QL          T H L
Sbjct: 182 LETYLNSRTDKLPY---VFVDKKETRMIRSREIN-TLFQFYSKQL------GFRVTPHML 231

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           RH+FA HL   G  L  IQ +LGH    +TQ+Y 
Sbjct: 232 RHTFAAHLAERGMPLECIQQLLGHETTHSTQLYA 265


>gi|116622057|ref|YP_824213.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225219|gb|ABJ83928.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 336

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 143/305 (46%), Gaps = 25/305 (8%)

Query: 11  SFELLKERQNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           S  LL   +++  N L   RG S  T+++Y    + F +FLA    + +    +  +   
Sbjct: 6   SESLLALTESFFHNYLRQTRGASVHTVRAYRDALKLFYLFLAGQKRKPVANLALDDIQSD 65

Query: 70  EIRAFISKRRTQKIGDRSLKRS--LSGIKSFLKYLKKRKITTESN---ILNMRNLKKSNS 124
            + AF+    +++ G+ ++ R+  L+ ++SF+++L +  +T       IL +RN K    
Sbjct: 66  ALLAFLDYVESRR-GNSAVTRNCRLAAVRSFVQHLLRHDVTRAGQYGRILAIRNKKALRR 124

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MD 183
           +   L  ++A  ++  +   + +       R+ A+L  LY  G R+SEAL++   ++ ++
Sbjct: 125 VATYLEPEEARAVIAAIDRRSRN-----GERDHALLLFLYNTGARVSEALAIRASDLQLE 179

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PGV 242
               +R+ GKG K RI PL P    A+   + + P     +    LFR   G  L   GV
Sbjct: 180 RPRQVRLLGKGRKERICPLWPETASAL---HRIIPVRSGED---SLFRNTLGALLTRDGV 233

Query: 243 ---FQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
               ++Y+R   ++         T H +RHS A  LL  G D+  I+  LGH  ++TT  
Sbjct: 234 AYLLRKYVRSAAQHAPSLRKRRVTPHVMRHSCAVALLQAGIDVSVIRDYLGHASVATTSR 293

Query: 298 YTNVN 302
           Y   N
Sbjct: 294 YITTN 298


>gi|15822601|gb|AAK73287.1| DNA integrase IntIPac [Pseudomonas alcaligenes]
          Length = 321

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 125/281 (44%), Gaps = 54/281 (19%)

Query: 65  QLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           ++   E+ AF+S    ++ +   +  ++LS I    K + + ++     ++  R   +  
Sbjct: 46  EMGGPEVEAFLSDLAVRRDVSASTQNQALSAILFLYKQVLQVELPWMDGVIRAR---RPQ 102

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            LP  L  ++  +++  +       T W+      I  LLYG G+R+ E L L  +++  
Sbjct: 103 RLPVVLTREEVASVLAQL-----DGTLWL------IASLLYGSGMRLMEVLRLRVKDVEF 151

Query: 184 DQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY----------DLCPFDLNLNIQLPLFR- 231
            +  + I+ GKG K R+  +LP    A LE +          DL       N+   L R 
Sbjct: 152 ARLEILIRDGKGQKDRVT-MLPRKLAAPLELHLQRVRALHEQDLREGYGRANLPHALARK 210

Query: 232 --------------------------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
                                     GI    L+    QR +R   R +GL    T HTL
Sbjct: 211 YPNAAAEWGWQFVFPSVNRSEDPRSGGIFRHHLHEKTIQRAVRNAVRRVGLHKPATPHTL 270

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           RHSFATHLL +G D+R++Q +LGH  + TTQIYT+V ++ G
Sbjct: 271 RHSFATHLLESGQDIRTVQELLGHADVKTTQIYTHVLNRGG 311


>gi|167969523|ref|ZP_02551800.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           H37Ra]
          Length = 352

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 89/191 (46%), Gaps = 18/191 (9%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K   +LP  L + QAL  +       + +   +  R+  I+ LLY  G+R+SE   L   
Sbjct: 3   KARRTLPAVLRQDQALRAM-AAAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVD 61

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPL 238
           +I      +R+ GKG+K R VP       A+  +  D     +       L  G RG+ L
Sbjct: 62  DIDTGHRLVRVLGKGNKQRTVPFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRL 121

Query: 239 NPGVFQRYIRQLRRYL--------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
           +       +RQ R  +        G P     H LRHS ATHLL  G DLR +Q +LGH 
Sbjct: 122 D-------VRQARTAVHQTVAAVDGAP-DMGPHGLRHSAATHLLEGGADLRVVQELLGHS 173

Query: 291 RLSTTQIYTNV 301
            L+TTQ+YT+V
Sbjct: 174 SLATTQLYTHV 184


>gi|224023591|ref|ZP_03641957.1| hypothetical protein BACCOPRO_00295 [Bacteroides coprophilus DSM
           18228]
 gi|224016813|gb|EEF74825.1| hypothetical protein BACCOPRO_00295 [Bacteroides coprophilus DSM
           18228]
          Length = 207

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 101/201 (50%), Gaps = 10/201 (4%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           KK   LP  + E +   L+D+          ++  R+  IL + Y  G+R SE + L   
Sbjct: 14  KKKKPLPVFVKEAEMDRLLDDADFGDG----FLGVRDRMILEVFYETGVRRSELIGLNDA 69

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           ++      +++ GK +K R++P    + + +  Y  +   +++       F    G+ L+
Sbjct: 70  DVDFSSCVIKVTGKRNKQRLIPFGEELERDLRVYLSVRDENISERENDAFFVRKDGRRLS 129

Query: 240 PG-VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           PG V+    R L + + L    + H LRH+FAT +L++  +L +++ +LGH  LSTT++Y
Sbjct: 130 PGMVYLLVKRNLTKVVTLK-KKSPHVLRHTFATSMLNHQAELEAVKELLGHESLSTTEVY 188

Query: 299 TNVNSKNGGDWMMEIYDQTHP 319
           T+   +     + ++Y+Q HP
Sbjct: 189 THTTFEE----LKKVYEQAHP 205


>gi|126667008|ref|ZP_01737983.1| hypothetical protein MELB17_05659 [Marinobacter sp. ELB17]
 gi|126628414|gb|EAZ99036.1| hypothetical protein MELB17_05659 [Marinobacter sp. ELB17]
          Length = 303

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/149 (38%), Positives = 80/149 (53%), Gaps = 10/149 (6%)

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPF- 219
           Y  GLR+SE+L+LT  ++  D   +R+    GKG K R VPL     KA+  Y+      
Sbjct: 134 YSLGLRLSESLNLTIADV--DSHLMRVHVRCGKGKKDRFVPLPLMTLKALRRYWATHRHP 191

Query: 220 DLNLNIQLPLFRGI--RGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
           DL      P +  +   GKP  +  G  Q+ I+Q+    G+      H+LRHSFATHLL 
Sbjct: 192 DLLFPGWHPPYASVATSGKPRVMARGGVQKAIKQVALDCGIRKHVHIHSLRHSFATHLLE 251

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           NG +LRSIQ++LGH    TT  YT +  +
Sbjct: 252 NGVNLRSIQTLLGHASPVTTARYTRMTHE 280


>gi|270307506|ref|YP_003329564.1| site-specific recombinase, phage integrase family [Dehalococcoides
           sp. VS]
 gi|270153398|gb|ACZ61236.1| site-specific recombinase, phage integrase family [Dehalococcoides
           sp. VS]
          Length = 332

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 113/224 (50%), Gaps = 19/224 (8%)

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           ++ F+ +L++    +   + N+R  K    + +  N++Q  TL+D V L T      ++A
Sbjct: 101 VRRFINWLRENDQISIDPLKNIRLPKVPRRIIQPFNKEQCQTLLDLVSLPT------LEA 154

Query: 155 R-NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
           R N AIL +    G+R  E   +  +++  +  T++I GKG K R+V +    +KA+LEY
Sbjct: 155 RRNKAILMVFMDTGIRCQELADMKLEDLNFETETIKIFGKGAKERVVRISRRTQKALLEY 214

Query: 214 Y---------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAH 263
                     D CPF     ++    R    +  N G+ +R I  L +  G+  L  + H
Sbjct: 215 QFERMKLMPNDKCPFVWVSRLKNRYSRKQSHQLTNDGI-RRMIENLGKKAGIQNLRCSPH 273

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT-NVNSKNG 306
           T RH+FAT  L NG     +QS+LGH  L+ T+ YT ++ S+N 
Sbjct: 274 TFRHTFATMSLLNGAGEFELQSLLGHSTLTMTRRYTASLTSQNA 317


>gi|260062369|ref|YP_003195449.1| tyrosine type site-specific recombinase [Robiginitalea biformata
           HTCC2501]
 gi|88783932|gb|EAR15103.1| tyrosine type site-specific recombinase [Robiginitalea biformata
           HTCC2501]
          Length = 386

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 129/282 (45%), Gaps = 36/282 (12%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRS 87
           R  S+ T+ SY     QFL FL     EK           T+  AF+     + K+   +
Sbjct: 101 RRYSESTIASYGTMAAQFLEFLGEKPPEKA--------DQTDAEAFLQWLVLERKVSVST 152

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
            ++++S +K    +L    +  +  +    + +K   LP  L + + + L+         
Sbjct: 153 HRQAISALKQLEAFLPACHLEAKGLV----SPRKDRKLPGVLGKAEVMRLL--------Q 200

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
           +T+ +  R   +  LLYGCGLR+ E ++L    +   +  L ++ GKG K R V +LP  
Sbjct: 201 QTRNLKHRT--LTALLYGCGLRVGELINLQLAEVDIPRRQLLVRAGKGRKDRRV-VLPER 257

Query: 207 RKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              +L  Y        L    P   L  G  G+  +    + +++   R  G+    T H
Sbjct: 258 LLPLLGDY--------LTAYAPSRYLAEGRPGQQYSATSIRAFLKANSRRAGILKKVTPH 309

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            LRHS+ATHLL  G D+R IQ +LGH R  TT +YT+V+ ++
Sbjct: 310 MLRHSYATHLLEQGVDIRYIQELLGHARPETTMVYTHVSRQD 351


>gi|229115620|ref|ZP_04245025.1| Integrase/recombinase [Bacillus cereus Rock1-3]
 gi|228667762|gb|EEL23199.1| Integrase/recombinase [Bacillus cereus Rock1-3]
          Length = 305

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 140/304 (46%), Gaps = 16/304 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L++ E+  GL+  T+QSY     +F  +L    +E I I+ I          + SK 
Sbjct: 9   KDYLEDKELS-GLAPRTIQSYGDTLNEFSRWLVA-EKEIINIEDITPPVIKGYLLYCSKE 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKIT-TESNILNMRNLKKSNSLPRALNEKQALTL 137
           R   +  R+ K  L  +K+F +YL+   I    SN  N     K++   +  +++Q   +
Sbjct: 67  RGNTVVTRNGK--LQHLKTFFRYLEDEDIIEIRSNPTNKIKPAKTDKTIKVYSDEQIKQM 124

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +       S E      R   ++ +L G G+R+ E +S+   ++     T+ I GK  K 
Sbjct: 125 LRYYRRMRSRENTLYSYRGHTVIVVLAGTGIRLGELVSMRWDSVDLLNKTITIFGKNRKS 184

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLG 255
              PL   V + + E+   C       I+LP  +F   RG PL     +    +L   +G
Sbjct: 185 LSTPLTDKVARELYEWRLFCE---KYYIKLPAHVFNDHRGNPLTVNAVKLMFTRLSVRMG 241

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
               TTAH  RH++A++ L  G D+ ++  ++ H ++ TT++Y +      G+ + E  D
Sbjct: 242 F--KTTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHA----FGNSLAESND 295

Query: 316 QTHP 319
           + +P
Sbjct: 296 KYNP 299


>gi|37527448|ref|NP_930792.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37527457|ref|NP_930801.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36786883|emb|CAE15952.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36786892|emb|CAE15961.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 376

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 134/312 (42%), Gaps = 28/312 (8%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFL---AFYTEEKITIQTIRQLSYTEIRAFISKRRT--QK 82
           ER  S+ TL+     T  F+++      Y    IT   + +      R     R+T  + 
Sbjct: 44  ERNWSESTLKVQTHHTYHFILWATERGLYYAADITRPILERYQ----RYLYQYRKTNGEP 99

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL----NEKQALTLV 138
           +  R+ +  L  +K + K+L K+ +   +   ++   +    LPR +      +Q L   
Sbjct: 100 LSTRTQRTQLEPLKVWFKWLTKQNLILANPAADIELPRLEKHLPRYILTIDETEQILAQP 159

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197
           D   L           R+ A++ LL+  G+R  E   L   ++   + T+ I QGKG+K 
Sbjct: 160 DLTTLQ--------GVRDRALMELLWSTGMRRGELTRLDVYSVDGKRKTVTIRQGKGNKD 211

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRG-KPLNPGVFQRYIRQLRRYLG 255
           R++PL       +  Y       L +N  +  LF  + G   L        +      +G
Sbjct: 212 RVLPLGERALSWLQRYQQQVRPQLIVNPDVKALFVAMDGLDGLQANGISNLVTAYINAVG 271

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +      H  RH+ AT +L NG DLR IQ++LGH  + +TQ+YT V+ +     +  ++ 
Sbjct: 272 IEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRA----LQAVHA 327

Query: 316 QTHPSITQKDKK 327
            THP+    D+K
Sbjct: 328 STHPAEQMADEK 339


>gi|229144736|ref|ZP_04273135.1| Integrase/recombinase [Bacillus cereus BDRD-ST24]
 gi|228638697|gb|EEK95128.1| Integrase/recombinase [Bacillus cereus BDRD-ST24]
          Length = 305

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 140/308 (45%), Gaps = 24/308 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE----EKITIQTIRQLSYTEIRAF 74
           +++L++ E+  GL+  T+QSY     +F  +L    E    E IT Q I+         +
Sbjct: 9   KDYLEDKELS-GLAPRTIQSYGDTLNEFSRWLVAEKEIINIEDITPQVIKGYL-----LY 62

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT-TESNILNMRNLKKSNSLPRALNEKQ 133
            SK R   +  R+ K  L  +K+F +YL+   I    SN  N     K++   +  +++Q
Sbjct: 63  CSKERGNTVVTRNGK--LQHLKTFFRYLEDEDIIEIRSNPTNKIKPAKTDKAIKVYSDEQ 120

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++       S E      R   I+  L G G+R+ E +S+   ++     T+ I GK
Sbjct: 121 IKQMLRYYRRMRSRENTLYSYRGHTIIVALAGTGIRLGELVSMRWDSVDLLNKTITIFGK 180

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLR 251
             K    PL   V + + E+   C       I+LP  +F   RG PL     +    +L 
Sbjct: 181 NRKSLSTPLTDKVARELYEWRLFCE---KYYIKLPAHVFNDHRGNPLTVNAVKLMFTRLS 237

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             +G    TTAH  RH++A++ L  G D+ ++  ++ H ++ TT++Y +      G+ + 
Sbjct: 238 LRMGF--KTTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHA----FGNSLA 291

Query: 312 EIYDQTHP 319
           E  D+ +P
Sbjct: 292 ESNDKYNP 299


>gi|146296464|ref|YP_001180235.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410040|gb|ABP67044.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 286

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 139/294 (47%), Gaps = 26/294 (8%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +LKE + +L+     +  ++ T++SY  D   F+ +    T ++   + + +    E ++
Sbjct: 1   MLKEFEEYLKT----QDFTENTIKSYTKDVELFMRWYIDTTGQEFLPENLTEFDLVEYKS 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS--NSLPRALNE 131
           ++ +   Q +   ++ RS+  ++ F+ +L  R +  +     ++ +K +  N  P  L++
Sbjct: 57  YLLR---QNLRPSTVNRSIISLRKFVHFLLDRGLLKKDISTRLKQVKDTTRNLSPVVLDK 113

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLR 189
           K            T H+  +  AR+ A + LL   G+RISEA++L  ++I   + +  ++
Sbjct: 114 KDIYKF-----RRTVHQ--FGKARDIAFVELLLNTGMRISEAINLKLEDIEISERKGKVK 166

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           I GKG   R VPL    RK + EY    P+ + N      LF    GKPL      + I 
Sbjct: 167 IWGKGRSYREVPLNSDARKYLSEYLKKRPYSETNY-----LFVTSTGKPLTRNTAYKIIL 221

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +  +   + L    H LRH FA  L+  G +L  +Q +LGH R+ TT  Y   N
Sbjct: 222 KYAKLASVDLH--PHMLRHFFAQTLIDKGLNLYDVQQLLGHQRIETTLRYKKPN 273


>gi|325107724|ref|YP_004268792.1| integrase family protein [Planctomyces brasiliensis DSM 5305]
 gi|324967992|gb|ADY58770.1| integrase family protein [Planctomyces brasiliensis DSM 5305]
          Length = 303

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 125/271 (46%), Gaps = 28/271 (10%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           + +  D R+F  + A    E+  +  +     T+ + F+ K + Q +   ++ RSL  ++
Sbjct: 37  RGFVLDLRKFAGWFAEANGERFEVGRVTTRDITDFKTFLRKDKGQAVA--TINRSLVTLR 94

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
            F  +L +R   + +    ++ LK+    P+ L+  +   L+  + L         D R 
Sbjct: 95  RFFGWLAERGTVSLNPAKPVKELKRQQLAPKGLDRTEVRKLLREIELRN-------DLRA 147

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQS----TLRIQGKGDKIRIVPLLPSVRKAILE 212
            AI  ++   G R+S+ ++L   ++M  +     T R+ GKG+K R+VPL    R+++  
Sbjct: 148 GAIFSVMLYTGCRVSDLVTLELTDLMIGERKGSVTFRL-GKGNKQRVVPLPLPARQSLRA 206

Query: 213 YYDL---CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           Y D     P DL       +F G RG   + GV +    +    +G+ L  T H  RH+ 
Sbjct: 207 YLDSRPPIPSDL-------VFVGERGPLTDKGV-RALCDKYSAIIGVKL--TPHLFRHTM 256

Query: 270 ATHLLS-NGGDLRSIQSILGHFRLSTTQIYT 299
           A   L+ N  DL  +  ILGH  L+TT  YT
Sbjct: 257 AHQFLADNENDLVGLAQILGHENLNTTARYT 287


>gi|157165114|ref|YP_001466903.1| hydrogenase expression/formation protein [Campylobacter concisus
           13826]
 gi|112800281|gb|EAT97625.1| site-specific recombinase, phage integrase family [Campylobacter
           concisus 13826]
          Length = 354

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 97/187 (51%), Gaps = 12/187 (6%)

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K   LP  + E++    +D +      + K    RN  I+ ++   G+R+SEAL+L  ++
Sbjct: 160 KGQKLPEFMGEEEVKKFLDAI---EESDFKQNSNRNKLIIKVIIFTGIRVSEALNLKRKD 216

Query: 181 IMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKP 237
           I +D     +RI+GKG+K RIV     +++ ++E + L    +N +N +  LF   +G  
Sbjct: 217 ITEDGDLFIIRIRGKGNKYRIVM----IKRHLIEAH-LNAIAINYINKEGYLFINKKGTR 271

Query: 238 LNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           L      R + Q+    G+      AH LRH+FAT L     DL  +Q  LGH  L+T++
Sbjct: 272 LTQAYVSRIVEQILFKAGIRKEKNGAHMLRHTFATMLYKKQKDLVLVQEALGHASLNTSR 331

Query: 297 IYTNVNS 303
           IYT+ +S
Sbjct: 332 IYTHFDS 338


>gi|88813691|ref|ZP_01128918.1| Integron integrase [Nitrococcus mobilis Nb-231]
 gi|88789045|gb|EAR20185.1| Integron integrase [Nitrococcus mobilis Nb-231]
          Length = 320

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 139/317 (43%), Gaps = 62/317 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRS 87
           R  S  T Q+Y    R+F++F           +  R +   E+  F+S   T+  +   +
Sbjct: 18  RHYSIRTEQAYLGWIRRFILFH--------RKRHPRDMGAPEVERFLSALATEYNVAAST 69

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
             ++LS I     +L +  +  E   L+ ++  K+   LP  L  ++    + +VL H  
Sbjct: 70  QNQALSAIL----FLYREVLGIELPWLDGVKRAKRPQRLPVVLTREE----IRSVLAH-- 119

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS 205
                +  RN+ +  LLYG GLR+ E + L  +++  D+  + ++ GKG + R+  L  S
Sbjct: 120 -----LQGRNALMASLLYGAGLRLLECVRLRVKDVELDRRQIVVRDGKGGRDRVTLLPES 174

Query: 206 VRKAILEYYDL----------------------------CPFDLNLNIQLPLFR------ 231
           +R ++ E  D                              P +       P  +      
Sbjct: 175 MRPSLEEQIDRVREIHNQDLTDGFGAVWLPHALARKYPNAPREFGWQYVFPSAKRSTDPR 234

Query: 232 -GIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
            G RG+  ++    QR ++Q  R  G+    + HT RHSFATHLL  G  +R+IQ +LGH
Sbjct: 235 SGRRGRHHIDEQTLQRAVKQAVRAAGVSKPASCHTFRHSFATHLLEAGYGIRTIQELLGH 294

Query: 290 FRLSTTQIYTNVNSKNG 306
             ++TT IYT+V +  G
Sbjct: 295 RDVNTTMIYTHVANCGG 311


>gi|325916803|ref|ZP_08179054.1| integron integrase [Xanthomonas vesicatoria ATCC 35937]
 gi|325536954|gb|EGD08699.1| integron integrase [Xanthomonas vesicatoria ATCC 35937]
          Length = 339

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 84/177 (47%), Gaps = 37/177 (20%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRK------------ 208
           LLYG G+R+ E L L  +++ D +  + ++ GKG K R VPL  S+++            
Sbjct: 141 LLYGSGMRLLECLRLRIKDVDDARGEIVVRDGKGGKDRRVPLPRSLKEVLQRQRERALLL 200

Query: 209 ----------------AILEYYDLCPFDLNLNIQLPLFRGIRG--------KPLNPGVFQ 244
                           A+   Y     +       P  R  R           ++  V Q
Sbjct: 201 HAADLAAGTGRVFLPHALARKYPNAGAEPGWQYLFPSARQSRDPRSGRVGRHHVSEEVLQ 260

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R ++  RR+ G+    T HTLRHSFATHLL  G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 261 RAVQMARRHAGIVKPATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVATTQIYTHV 317


>gi|291526988|emb|CBK92574.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 280

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 129/292 (44%), Gaps = 28/292 (9%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +E  N +Q+   +R L   T+ +Y      FL           T + I  L+  ++  
Sbjct: 1   MYEEIFNQIQSAANKRNLKDSTIHAYCTSVAHFL---------NHTAKDIDALTTDDVDI 51

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+++++   I   +     SGI+ F K + K+    +    ++  +K+   LP  L + +
Sbjct: 52  FLTEKKLSGISPETYNHYHSGIRFFYKKILKKNWDDD----DIPRMKRDRKLPTVLTKTE 107

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-G 192
              ++D             + ++ A++  +Y  GLR+SE   L   +I   +  + I+ G
Sbjct: 108 ISAILDAT----------PNLKHKAMIATMYSGGLRVSEVTHLHYDDISRTKKNIHIRDG 157

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K    R   L     + + EY+  C       I  P      G  L      ++ R+  +
Sbjct: 158 KSRSDRYTLLADRTLEILTEYWFQCG--RPRGILFP--SSWTGDYLTKDSVIQFFRESAK 213

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             G+    + H LRHSFA+HL  +G D++ IQ++LGH    +T++Y +V++K
Sbjct: 214 RAGIQKHVSTHCLRHSFASHLFESGCDVKYIQALLGHRDPKSTEVYLHVSNK 265


>gi|157164045|ref|YP_001467592.1| transport protein [Campylobacter concisus 13826]
 gi|112801157|gb|EAT98501.1| site-specific recombinase, phage integrase family [Campylobacter
           concisus 13826]
          Length = 353

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 97/187 (51%), Gaps = 12/187 (6%)

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K   LP  + E++    +D +      + K    RN  I+ ++   G+R+SEAL+L  ++
Sbjct: 160 KGQKLPEFMGEEEVKKFLDAI---EESDFKQNSNRNKLIIKVIIFTGIRVSEALNLKRKD 216

Query: 181 IMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKP 237
           I +D     +RI+GKG+K RIV     +++ ++E + L    +N +N +  LF   +G  
Sbjct: 217 ITEDGDLFIIRIRGKGNKYRIVM----IKRHLIEAH-LNAIAINYINKEGYLFINKKGTR 271

Query: 238 LNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           L      R + Q+    G+      AH LRH+FAT L     DL  +Q  LGH  L+T++
Sbjct: 272 LTQAYVSRIVEQILFKAGIRKEKNGAHMLRHTFATMLYKKQKDLVLVQEALGHASLNTSR 331

Query: 297 IYTNVNS 303
           IYT+ +S
Sbjct: 332 IYTHFDS 338


>gi|88797010|ref|ZP_01112600.1| tyrosine recombinase [Reinekea sp. MED297]
 gi|88779879|gb|EAR11064.1| tyrosine recombinase [Reinekea sp. MED297]
          Length = 317

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 102/230 (44%), Gaps = 10/230 (4%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L  + SFLK L   ++         R  +    LP+ + + + +      L+  +     
Sbjct: 89  LMAVTSFLKCLYYHEMIASDFYTKFRLPRVRKRLPKTIPDVEQI----EQLIRQTMTKGA 144

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210
           I  R+ AIL L Y    R +E  +L  ++I   + T+ I +GKGD+ R+VP+       I
Sbjct: 145 IGLRDRAILELFYASAPRRAELANLDIRDIDFKRGTVTIHKGKGDQDRVVPVGERALFWI 204

Query: 211 LEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
             Y D L P    L+    LF G  GK +        + +      +    + H LRH+ 
Sbjct: 205 KSYLDKLRPLHARLDSGEALFLGTTGKRIRKSTLTDLVHEYILRSAVADKGSCHLLRHTT 264

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            TH+  NG +LR +Q  LGH    TT+IYT+V  ++    +   Y  THP
Sbjct: 265 PTHMHRNGAELRDLQEFLGHEDPKTTEIYTHVTIRD----LKRTYKSTHP 310


>gi|86145355|ref|ZP_01063686.1| hypothetical protein MED222_05540 [Vibrio sp. MED222]
 gi|85836932|gb|EAQ55052.1| hypothetical protein MED222_05540 [Vibrio sp. MED222]
          Length = 160

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 86/156 (55%), Gaps = 20/156 (12%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
           GLR+ E L+LT  +I  D  T+R+   +GKG K R+VPL     KA+  ++        L
Sbjct: 2   GLRLGEGLNLTVHDI--DSQTMRVHIREGKGGKDRMVPLPLRTLKALRTHW--------L 51

Query: 224 NIQLP--LFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
           + + P  LF G+ GK    P++ G  Q+ ++ + +   +    + H+LRH FATHLL  G
Sbjct: 52  SHKHPRLLFPGL-GKGDDAPMDRGGIQKTMKLVLKECDIQKHASPHSLRHCFATHLLEQG 110

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            DLRS+Q++LGH  L+TT  YT +      D  M I
Sbjct: 111 LDLRSLQTLLGHASLNTTARYTRMTQIKQRDAAMAI 146


>gi|295087379|emb|CBK68902.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 351

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 111/225 (49%), Gaps = 17/225 (7%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALN-EKQALTLVDNVLLHTSHET 149
           LS ++ FLKYL  R I+  S  L   N+  + NS  + +   KQA+    +VLL   ++ 
Sbjct: 92  LSALRVFLKYLSFRDISYMSVFLQAENVPNEKNSKRKVIGLSKQAV----DVLLSMPNQG 147

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVR 207
             I  R+  ++ LLY   +RI+E L+L   NI+ D  +  + + GKG K R +PLL    
Sbjct: 148 STIGFRDYTLMLLLYSTAVRINELLTLKISNIVIDCVKPHIIVIGKGRKKRPIPLLAKPA 207

Query: 208 KAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-----RRYLGLPLS 259
           + +  Y   Y     D N  +     +GI   P++     + +++       R   +P+ 
Sbjct: 208 QCLKRYLIKYHPKQNDANALLFCSKSKGIYV-PMSAENVNKMLKKYATMAHERCQDVPMD 266

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             AH  RH+ A+H L NG ++  I  +LGH  + TT +Y ++ +K
Sbjct: 267 LHAHQFRHAKASHWLENGMNIAQISYLLGHESIQTTMVYLDITTK 311


>gi|296450797|ref|ZP_06892548.1| integrase/recombinase [Clostridium difficile NAP08]
 gi|296260358|gb|EFH07202.1| integrase/recombinase [Clostridium difficile NAP08]
          Length = 280

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 103/207 (49%), Gaps = 15/207 (7%)

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           L+++ KR +    +   +  +K+  SLP  L+ ++      N +L  +   K+      A
Sbjct: 73  LRFMYKRVLKLNWDEDEIPRMKRDRSLPTVLSREEV-----NAILDVTTNLKY-----KA 122

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL-EYYDLC 217
           I  ++Y  GLR+SEA  L   +I     ++ I+   +++    +L      IL +Y+  C
Sbjct: 123 IFAVMYSGGLRVSEATHLHYDDISRSNHSIHIRNTKNRMDRYTILADRTLDILTQYWFQC 182

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
                 NI  P      G+ L+     + +R+     G+P   T+H  RHSFA+HLL +G
Sbjct: 183 --QRPRNILFP--SQTTGEYLDISAVNQVLRRSSERAGIPKHVTSHAFRHSFASHLLEDG 238

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSK 304
            D++ IQ++LGH    +T+IY +V++K
Sbjct: 239 CDIKYIQALLGHLDPKSTEIYLHVSNK 265


>gi|54308529|ref|YP_129549.1| putative integrase [Photobacterium profundum SS9]
 gi|46912958|emb|CAG19747.1| putative integrase [Photobacterium profundum SS9]
          Length = 295

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 106/224 (47%), Gaps = 30/224 (13%)

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           L++  +  +  E   L++    +S  LP  +  +Q   L+          TK    R   
Sbjct: 79  LQFFYRHTLEKEWQWLDIVKPPQSKKLPDIITAQQVALLIS--------MTK--QKRYQI 128

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYD 215
               LY  GLR+ E LSLT  +I  DQ T+++    GKG K R+VP+      A+  ++ 
Sbjct: 129 FFLTLYTMGLRLGEGLSLTVHDI--DQHTMQVHIRDGKGGKDRLVPVPQRTLNALRAHW- 185

Query: 216 LCPFDLNLNIQLP--LFRGIRG----KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
                  L  + P  +F G +G     P++ G  Q+ ++ + +  G+    + H+LRH F
Sbjct: 186 -------LTHRHPRLIFPG-KGCNTDNPMDRGGVQKAMKLVLKDCGINKPISPHSLRHCF 237

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           ATHLL  G DLRS+Q +LGH  L+TT  YT +      D  + I
Sbjct: 238 ATHLLEQGLDLRSLQILLGHASLNTTARYTRMTQIKQRDAALAI 281


>gi|227461227|gb|ACP39554.1| putative integron integrase [uncultured microorganism]
          Length = 347

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 128/293 (43%), Gaps = 53/293 (18%)

Query: 51  AFYTEEKITIQTIRQ---LSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRK 106
           A++ E  I    IR    +S  E+ AF++    Q ++   +  ++LS     L +L +  
Sbjct: 66  AYWIERYIRFHGIRHPQTMSGPEVEAFLTDLAVQGRVAASTQNQALSA----LLFLYREV 121

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
           +  E  +L+     +   +P  L+  +   L+  +    + E   + AR      L+YG 
Sbjct: 122 LRMEIGMLDAVRANRPKRVPAVLSVPEIRALLAGIDHLPTTEPYGLMAR------LMYGA 175

Query: 167 GLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI---------LEYYDL 216
           GLR+ E   L  +++  ++  L + +GKGDK R V L  + R  +         L   DL
Sbjct: 176 GLRLMECCRLRVKDVDLERGQLTVREGKGDKDRYVMLPAAARDGLGRQRAWRRSLHERDL 235

Query: 217 C--------PF---------DLNLNIQLPLFRGIR----------GKP-LNPGVFQRYIR 248
                    P          D  L  Q  LF   R          G+  ++    QR + 
Sbjct: 236 TRGYGRVELPHALHRKYLHADCELGWQF-LFASTRMSHDPRTGEIGRHHVHDSAVQRAMT 294

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            + R LG     T HTLRHSFATHLL  G D+R++Q +LGH  + TT IYT+V
Sbjct: 295 TVVRQLGWTKRVTCHTLRHSFATHLLEQGQDIRTVQELLGHSDVRTTMIYTHV 347


>gi|255012873|ref|ZP_05284999.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 231

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 109/226 (48%), Gaps = 12/226 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E+ LS  ++ +Y  D  + L    F  +EK   + ++++SY +++ FI++ R   I 
Sbjct: 15  LRLEKSLSANSIDAYLTDLDKLL---RFAEDEK---KDVKEISYDDLQQFIAQLRDIGIH 68

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            RS  R +SGIKSF ++L      T      + + K    LP  L   +  +++D + L 
Sbjct: 69  PRSQARIISGIKSFYRFLLLDNYITNDPTELLESPKIGLKLPEVLTVNEINSILDTIDLT 128

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
                     RN A+L +LY CGLR+SE   L   +I   +  +R++GKG K R+VP+  
Sbjct: 129 LPE-----GQRNRAMLEVLYSCGLRVSELTGLRYSDIYPKEGFIRVEGKGSKQRLVPISE 183

Query: 205 SVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
              + I  Y YD     +    +  LF   RG  L+  +    I+Q
Sbjct: 184 VALREIKNYLYDRNSVVVKKGFEDILFLSRRGTALSRIMVFHIIKQ 229


>gi|265753910|ref|ZP_06089265.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263235624|gb|EEZ21148.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 342

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 111/225 (49%), Gaps = 17/225 (7%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALN-EKQALTLVDNVLLHTSHET 149
           LS ++ FLKYL  R I+  S  L   N+  + NS  + +   KQA+    +VLL   ++ 
Sbjct: 83  LSALRVFLKYLSFRDISYMSVFLQAENVPNEKNSKRKVIGLSKQAV----DVLLSMPNQG 138

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVR 207
             I  R+  ++ LLY   +RI+E L+L   NI+ D  +  + + GKG K R +PLL    
Sbjct: 139 STIGFRDYTLMLLLYSTAVRINELLTLKISNIVIDCVKPHIIVIGKGRKKRPIPLLAKPA 198

Query: 208 KAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-----RRYLGLPLS 259
           + +  Y   Y     D N  +     +GI   P++     + +++       R   +P+ 
Sbjct: 199 QCLKRYLIKYHPKQNDANALLFCSKSKGIYV-PMSAENVNKMLKKYATMAHERCQDVPMD 257

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             AH  RH+ A+H L NG ++  I  +LGH  + TT +Y ++ +K
Sbjct: 258 LHAHQFRHAKASHWLENGMNIAQISYLLGHESIQTTMVYLDITTK 302


>gi|327537427|gb|EGF24153.1| Integrase, integron-type [Rhodopirellula baltica WH47]
          Length = 408

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 86/180 (47%), Gaps = 37/180 (20%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVP----LLPSVRKAI--- 210
           I  LLYGCG+RISEA  L  ++I      + I Q KG+K R+VP    L+  +R+ +   
Sbjct: 200 IAKLLYGCGMRISEAHRLRVKDIDFANKQIEIRQSKGNKSRLVPMPDDLIEPLRRFVKTR 259

Query: 211 --LEYYDLC--------PFDLN---------LNIQL----------PLFRGIRGKPLNPG 241
             L  +DL         P+ L+         L  Q           P    I    L+  
Sbjct: 260 EALHEHDLANGTASVYLPYALDRKYPSAHRELKWQYLFASHRLSRDPRTGRIHRHHLHAS 319

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            F  ++R+     G+    T+HT RH FATHLL  G D+R IQ +LGH  + TT+IYT+V
Sbjct: 320 TFPTHLRRAVEQAGILKHVTSHTFRHCFATHLLWQGTDIRQIQQLLGHSDVKTTEIYTHV 379


>gi|164688594|ref|ZP_02212622.1| hypothetical protein CLOBAR_02239 [Clostridium bartlettii DSM
           16795]
 gi|164603007|gb|EDQ96472.1| hypothetical protein CLOBAR_02239 [Clostridium bartlettii DSM
           16795]
          Length = 295

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 139/304 (45%), Gaps = 12/304 (3%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +K  + +L  +E  + LSK T+ SY  D ++++ +L    E  I +  + +    +I ++
Sbjct: 1   MKVLEEYLNYIEKNKKLSKNTVASYNRDLKKYVEYL---NERNINLSDVVE---NDIISY 54

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + +   + I   S+ R +S IKS+  YL   KI       N++  K        L E + 
Sbjct: 55  LIELEKEDISVASISRMISSIKSYHDYLFFNKILDTDPSKNIKKPKVKRVDVEILTEDEV 114

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+    L T         R+ AI  +LYG G++++E + +  +++ D +      G G
Sbjct: 115 DKLLKFEDLSTPKRI-----RDKAIFEILYGTGIKVTELIDMNLEDV-DLEIDYIYCGSG 168

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
              R++PL  +    +L+Y +    +L    +  LF   +G+        + I++  +  
Sbjct: 169 KNQRVIPLCETTEFYLLKYINESRNELTYPEEKALFVNAQGQRFTRQGLWKLIKKYAKEA 228

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            +  +     LR+SFA HLL+ G ++  +  ILG+  LS+ Q+Y     KN    + E +
Sbjct: 229 DINKNINPTVLRNSFAIHLLNGGANVAVVNKILGNSNLSSLQLYLKHIDKNLRKEIKEKH 288

Query: 315 DQTH 318
            + H
Sbjct: 289 PREH 292


>gi|149198071|ref|ZP_01875119.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149198416|ref|ZP_01875461.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149200078|ref|ZP_01877103.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149136836|gb|EDM25264.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149138422|gb|EDM26830.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149138983|gb|EDM27388.1| phage integrase [Lentisphaera araneosa HTCC2155]
          Length = 294

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 108/226 (47%), Gaps = 30/226 (13%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++K     +  F +Y+ KR    E   L +  + +  SLP  L++       D  LL  S
Sbjct: 67  TVKMDRCALSFFYQYVLKR----EWKWLEIVRIPRVKSLPDILSQ-------DETLLILS 115

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS 205
           H  K   AR    L  +Y  GLRISE + +   +I  D+  L ++  KG K R+VPL P 
Sbjct: 116 HLEK---ARYRTCLTAIYSMGLRISEGVRIQTGDICKDRMRLHVRNSKGYKDRLVPL-PQ 171

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---------LNPGVFQRYIRQLRRYLGL 256
           V   +L  Y    + ++ N  L LF    GK          ++ G  Q   +      GL
Sbjct: 172 VTYQMLRDY----WVMHRN-PLLLFPRYAGKSRSNSKTTLHMDKGGVQSAFKAALADSGL 226

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               + H+LRHS+ATHL+  G +LR IQ ILGH   +TT IY++++
Sbjct: 227 AKQVSVHSLRHSYATHLVEAGVNLRVIQEILGHSSPATTAIYSHLS 272


>gi|54303359|ref|YP_133352.1| hypothetical protein PBPRB1692 [Photobacterium profundum SS9]
 gi|46916789|emb|CAG23552.1| hypothetical protein PBPRB1692 [Photobacterium profundum SS9]
          Length = 295

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 106/224 (47%), Gaps = 30/224 (13%)

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           L++  +  +  E   L++    +S  LP  +  +Q   L+          TK    R   
Sbjct: 79  LQFFYRHTLEKEWQWLDIVKPPQSKKLPDIITAQQVALLIS--------MTK--QKRYQI 128

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYD 215
               LY  GLR+ E LSLT  +I  DQ T+++    GKG K R+VP+      A+  ++ 
Sbjct: 129 FFLTLYTMGLRLGEGLSLTVHDI--DQHTMQVHIRDGKGGKDRLVPVPQRTLNALRAHW- 185

Query: 216 LCPFDLNLNIQLP--LFRGIRG----KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
                  L  + P  +F G +G     P++ G  Q+ ++ + +  G+    + H+LRH F
Sbjct: 186 -------LTHRHPRLIFPG-KGCNTDNPMDRGGVQKAMKLVLKDCGINKPISPHSLRHGF 237

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           ATHLL  G DLRS+Q +LGH  L+TT  YT +      D  + I
Sbjct: 238 ATHLLEQGLDLRSLQILLGHASLNTTARYTRMTQIKQRDAALAI 281


>gi|54303070|ref|YP_133063.1| hypothetical protein PBPRB1396 [Photobacterium profundum SS9]
 gi|46916498|emb|CAG23263.1| hypothetical protein PBPRB1396 [Photobacterium profundum SS9]
          Length = 295

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 106/224 (47%), Gaps = 30/224 (13%)

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           L++  +  +  E   L++    +S  LP  +  +Q   L+          TK    R   
Sbjct: 79  LQFFYRHTLEKEWQWLDIVKPPQSKKLPDIITAQQVALLIS--------MTK--QKRYQI 128

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYD 215
               LY  GLR+ E LSLT  +I  DQ T+++    GKG K R+VP+      A+  ++ 
Sbjct: 129 FFLTLYTMGLRLGEGLSLTVHDI--DQHTMQVHIRDGKGGKDRLVPVPQRTLNALRAHW- 185

Query: 216 LCPFDLNLNIQLP--LFRGIRG----KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
                  L  + P  +F G +G     P++ G  Q+ ++ + +  G+    + H+LRH F
Sbjct: 186 -------LTHRHPRLIFPG-KGCNTDNPMDRGGVQKAMKLVLKDCGINKPISPHSLRHCF 237

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           ATHLL  G DLRS+Q +LGH  L+TT  YT +      D  + I
Sbjct: 238 ATHLLEQGLDLRSLQILLGHASLNTTARYTRMTQIKQRDAALAI 281


>gi|153930897|ref|YP_001385278.1| phage integrase family integrase/recombinase [Clostridium botulinum
           A str. ATCC 19397]
 gi|152926941|gb|ABS32441.1| integrase/recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 19397]
          Length = 331

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 135/279 (48%), Gaps = 29/279 (10%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GLS  TL++Y+ +     IF  +  +   TI  +      ++R F++ +R + +   S+ 
Sbjct: 70  GLSLKTLKNYKYN---LAIFADYLRKPLATINAM------DLRMFLA-QRCKHMKASSVN 119

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             +S +KSF  +L   +   ++  L ++  K+   +  ALNE++        +L  + ET
Sbjct: 120 GQISILKSFFGWLHMEEYIPKNPSLKLKQTKQPKRVRHALNEEEI------EILRQACET 173

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
                R  A++  L   G R+SE + +   +I  ++ +L + GKGDK R V    +  K 
Sbjct: 174 D----REKALIEFLISTGCRLSEVIGVNKTDIDWNEMSLFVIGKGDKERKV-YFNTKAKI 228

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKP---LNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           +L+ Y L   D N+     LF   + KP   L     QR I+ +     +  S   H  R
Sbjct: 229 LLKKYLLTRSDENI----ALFVTSK-KPHNRLGGRSIQREIKNIAIRAKIDKSIYPHLFR 283

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           HSFATH L++G  L  IQ ++GH   STTQ+Y  ++ +N
Sbjct: 284 HSFATHKLNSGMPLPVIQHLMGHENPSTTQVYAELSEEN 322


>gi|88704224|ref|ZP_01101938.1| site-specific recombinase IntIA [Congregibacter litoralis KT71]
 gi|88701275|gb|EAQ98380.1| site-specific recombinase IntIA [Congregibacter litoralis KT71]
          Length = 330

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 105/197 (53%), Gaps = 38/197 (19%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR--IVP--LLPSVRKAILEY 213
           ++ L+YG G+R +E LSL  ++I  D + + ++ GKG+K R  ++P  L+P++++ I   
Sbjct: 133 MVALMYGSGMRSAELLSLRVKDIDFDSNNIIVRSGKGNKDRSTMLPQRLVPALKRQICTV 192

Query: 214 YDLCPFDLNLN---IQLP------------------LFRGIR-GKPLNPGVFQRY----- 246
             L   DL      + LP                  LF   R G+    GV +R+     
Sbjct: 193 ELLHAQDLADGFGAVYLPDALERKYPNAAEETAWQFLFPASRIGRDPRSGVLRRHHLHPT 252

Query: 247 --IRQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              RQ+RR +   G+     +H+ RHSFATHLL +G DLR+IQ +LGH  ++TT+IYT+V
Sbjct: 253 ALTRQIRRAVRNAGIHKPARSHSFRHSFATHLLEDGYDLRTIQELLGHSDITTTEIYTHV 312

Query: 302 NSKNGGDWMMEIYDQTH 318
            ++ GG  ++   D  H
Sbjct: 313 VNR-GGRGVVSPTDALH 328


>gi|159901675|ref|YP_001547921.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894714|gb|ABX07793.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 291

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 131/294 (44%), Gaps = 36/294 (12%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ  + +++I RGLS  T  +Y    RQ   +  F T          +LS  ++R +   
Sbjct: 6   RQRMIDDMQI-RGLSAQTQSAYVQAVRQLAQY--FNTPPD-------RLSDDQLRRYFLY 55

Query: 78  RRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            RT+K +   ++  +L  I+    +L +  +     +L+     K+  LP  L+  +   
Sbjct: 56  LRTEKQVSASTITVTLCAIR----FLYQHTLQRSWPLLDALRPPKAQPLPVVLSRDEVRA 111

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGD 195
           ++  V             R+   L ++Y CGLR+ E + L   NI   +  L IQ GKG+
Sbjct: 112 ILHQVR----------TPRHRVCLSIIYACGLRLMEGVRLQVCNIDSARLMLHIQHGKGN 161

Query: 196 KIRIVPLLPSVRKAILEYYD-------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           K R +PL P     +  ++        L P    ++  LP+    R   ++    QR   
Sbjct: 162 KDRYIPLPPPALAMLRAHWRSHQHPRWLFPSHW-VDKALPI--AARSVSMSRDGVQRAFL 218

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              +  G+    T HTLRHS+ATHLL  G +LR IQ  LGH   +TT  YT++ 
Sbjct: 219 LACQASGMRKHATVHTLRHSWATHLLEAGVNLRIIQGWLGHTSPTTTAHYTHLT 272


>gi|113473885|ref|YP_718148.1| putative integrase [Sphingomonas sp. KA1]
 gi|112821565|dbj|BAF03436.1| putative integrase [Sphingomonas sp. KA1]
          Length = 334

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 129/292 (44%), Gaps = 22/292 (7%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           ++L  ER +S  T+++Y       + F A   + + T   +  L    I AF+     Q+
Sbjct: 14  EHLPRERAVSPHTVKTYANCFVLLVRFAADRLKRRPTDLEVEDLGIDLILAFLDHIEAQR 73

Query: 83  IGD-RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD-- 139
               R+    L+ I+SF +Y++ R        L +R      S+P    +K  +  +D  
Sbjct: 74  GSSVRTRNGRLAAIRSFFRYIEYRVPVCLDQALRVR------SIPSKKTDKALIDYLDRA 127

Query: 140 --NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQGKGDK 196
               LL        +  R+ A+L+L Y  GLR+SE ++L  ++  D   ST+ I GKG +
Sbjct: 128 EIKALLDAPDPRTRLGTRDRAMLHLAYAGGLRVSELVTLQLRDFPDRSLSTVHIMGKGRR 187

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG- 255
            R++PL    + A+  +  + P D  +     +F    G+P+    F   + +  +    
Sbjct: 188 ERVLPLWKETQFALRAWLAIRP-DAEVA---EIFLNANGQPMTRDGFAFRLAEHVKTAAE 243

Query: 256 -----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                L    T H LRHS A H L+  GD+R +   LGH  + +T+ Y   +
Sbjct: 244 KQPSILGKRVTPHVLRHSCAMHTLAATGDIRKVALWLGHASIQSTEAYLRAD 295


>gi|91774765|ref|YP_544521.1| integron integrase [Methylobacillus flagellatus KT]
 gi|91708752|gb|ABE48680.1| Integron integrase [Methylobacillus flagellatus KT]
          Length = 334

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 153/332 (46%), Gaps = 73/332 (21%)

Query: 33  KLTLQSYECDTRQFLI-----FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           KL L+ Y   T Q  +     ++ F+ +     +  R +   +I AF++          +
Sbjct: 25  KLRLKHYSLRTEQAYVDWIKRYILFHGK-----RHPRDMGAADIEAFLTHL--------A 71

Query: 88  LKRSLSG-----IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +KR+++       KS L YL +  +  E   L+  N+ ++N +P+ L    +++ V +VL
Sbjct: 72  VKRNVAASTQNQAKSALLYLYREVLEVELPWLD--NVTQAN-VPKRLPVVLSVSEVQSVL 128

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVP 201
              S         ++ +  LLYG GLR+ EA+ L  +++  ++  + + +GKG K R+  
Sbjct: 129 AGLS-------GTHALVAALLYGGGLRLMEAVRLRVKDVDIERREIVVREGKGFKDRVTM 181

Query: 202 LLPSVRKAI---------LEYYDLC--------PFDLN--------------------LN 224
           L  SV  A+         L   D+         PF L+                    L+
Sbjct: 182 LPESVVSALKGHLVKVKMLHEEDVAAGFGEVYLPFALDKKYPNAGRDWGWQYVFPSRQLS 241

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
           +  P     R   ++    QR ++Q     G+    T HTLRHSFATHLL +G D+R++Q
Sbjct: 242 VD-PRSGKTRRHHMDEKGVQRAMKQAVFAAGIAKPATPHTLRHSFATHLLQSGYDIRTVQ 300

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            +LGH  +STT IYT+V ++ GG  ++   DQ
Sbjct: 301 ELLGHSDVSTTMIYTHVLNR-GGKGVVSPLDQ 331


>gi|103485933|ref|YP_615494.1| phage integrase [Sphingopyxis alaskensis RB2256]
 gi|98976010|gb|ABF52161.1| phage integrase [Sphingopyxis alaskensis RB2256]
          Length = 334

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 133/299 (44%), Gaps = 30/299 (10%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           ++L  ER +S  T+++Y       + F A   + + T   +  L    I AF+      +
Sbjct: 14  EHLPRERAVSPHTVKTYANCFVLLVQFAADRLKRRPTDLEVEDLGTDMIMAFLDH---VE 70

Query: 83  IGDRSLKRS----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           IG  S  R+    L+ I+SF +Y++ R        L +R      ++P    +K  +  +
Sbjct: 71  IGRGSCVRTRNGRLAAIRSFFRYIEYRIPACLDQALRVR------AIPTKKTDKALIDYL 124

Query: 139 D----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQGK 193
           D      LL T      +  R+ A+L+L Y  GLR+SE ++L   +  D   ST+ I GK
Sbjct: 125 DRAEIKALLDTPDPRTRLGTRDRAMLHLTYAGGLRVSELVTLQLGDFPDRSLSTMHIMGK 184

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRR 252
           G + R++PL    + A+  +  + P      +++  +F    G+P+    F   + +  +
Sbjct: 185 GRRERVLPLWKETQIALRAWLAIRP-----QVEVTEIFLNANGQPMTRDGFAFRLAEHVK 239

Query: 253 YLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
                    L    T H LRHS A H L+  GD+R +   LGH  + +T+ Y   + + 
Sbjct: 240 TAATKQPSILGKRVTPHVLRHSCAMHTLAATGDIRKVALWLGHASIQSTETYLRADPEE 298


>gi|197344628|gb|ACH69660.1| phage integrase [uncultured bacterium]
          Length = 291

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 105/220 (47%), Gaps = 16/220 (7%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           SL  +L+G+K F     +R       +  MR ++    LP  L++++      + L+  +
Sbjct: 71  SLNATLTGLKFFFDVTLER----SDAMAKMRPVRTPRRLPVVLSQEEV-----SRLIAAA 121

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205
              K+  A     L + YG GLR+ E + L   +I   + TLR+ QGKG K R   L P 
Sbjct: 122 PSIKYQTA-----LSVAYGAGLRVGEIVRLRVADIDSQRMTLRVDQGKGRKDRYAILPPL 176

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           + + +  ++     +  +     LF G    +P++     R + +     G+      HT
Sbjct: 177 LLQRLRAWWKAAHAEGAIRADGWLFPGRDPVQPMSARQLNRVVHEAAAAAGIGKRVAMHT 236

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           LRHSFATHLL    D+R IQ +LGH +L TT +Y  V ++
Sbjct: 237 LRHSFATHLLEQKVDIRVIQVLLGHKKLETTSMYAQVATE 276


>gi|118476848|ref|YP_893999.1| integrase [Bacillus thuringiensis str. Al Hakam]
 gi|118416073|gb|ABK84492.1| integrase [Bacillus thuringiensis str. Al Hakam]
          Length = 382

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 138/293 (47%), Gaps = 26/293 (8%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTE--EKIT-----IQTIRQLSYTEIRAFISKRRTQK 82
           GL + TL   E     FL+F  +  E  E +T       TIR+  Y      +  +    
Sbjct: 85  GLVRKTL---ENKKGYFLVFHRYLEEHHEDVTPNTLDTNTIREFLYYLKNDHVKHKNNHC 141

Query: 83  IGDR--SLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           + ++  S+  S+S I + +K+++       E   + +    K  SL    +  +AL+ VD
Sbjct: 142 VKEKYKSVGVSVSYINTIMKHMRAFYNFLVEEEYVQLNPFTKIKSLKEVQDNIEALS-VD 200

Query: 140 NV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KG 194
            +  LL   ++  +   R+  ++ LL   G+RISEAL+L  ++I    + + ++G   K 
Sbjct: 201 QLKTLLKQPNQRTYAGFRDYVLMMLLADTGMRISEALNLQQEDIDFKTNVIELKGTNTKN 260

Query: 195 DKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            K R VP+     K + E   ++  FD      L +F  + G  ++P  F++ ++     
Sbjct: 261 RKTRYVPISQKTSKLLRELLVEIEEFD-----TLHIFATVYGNTIDPARFRQRLKMYGNN 315

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            G+  +  + HT RH+FA + L N GD+ ++Q ILGH  +   + Y N+ SK+
Sbjct: 316 SGIKGVRVSPHTFRHTFAKYYLLNNGDVMTLQKILGHSSIEMVRKYINMTSKD 368


>gi|163795288|ref|ZP_02189255.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|163795386|ref|ZP_02189353.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|163796178|ref|ZP_02190140.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|159178637|gb|EDP63177.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|159179274|gb|EDP63805.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|159179372|gb|EDP63903.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
          Length = 276

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 86/168 (51%), Gaps = 12/168 (7%)

Query: 141 VLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGD 195
           V+L      ++++A    ++ A L   Y  GLR+SE ++L   ++   +  +R++ GKG 
Sbjct: 93  VVLSADEVVRFLEAVASLKSRAALTTAYAAGLRVSEVVALRVGDVDSGRMVIRVEHGKGG 152

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYL 254
           K R V L   +   +  Y+ L         +  LF G    KP++  V     R  R   
Sbjct: 153 KDRYVMLSAQLLGILRTYWRLA------RPEHWLFPGREASKPIDVQVLHAACRSARAAA 206

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           GL    T HTLRHSFATHLL +G D+R IQ +LGH  LSTT  YT V+
Sbjct: 207 GLDKRVTVHTLRHSFATHLLESGTDIRIIQVLLGHANLSTTARYTQVS 254


>gi|289578357|ref|YP_003476984.1| integrase [Thermoanaerobacter italicus Ab9]
 gi|297544634|ref|YP_003676936.1| integrase family protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|289528070|gb|ADD02422.1| integrase family protein [Thermoanaerobacter italicus Ab9]
 gi|296842409|gb|ADH60925.1| integrase family protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 328

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 148/308 (48%), Gaps = 34/308 (11%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL----------AFYTEEKIT---I 60
           LL+E  N+   +   +  S  T+++Y  D   FL FL            + E  I+   +
Sbjct: 19  LLEEFLNYFSTV---KARSYNTVKAYAYDLVLFLRFLKQRRGKVSPDVEFDEIDISDVDV 75

Query: 61  QTIRQLSYTEIRA---FISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNM 116
             I  +   ++ A   F++  R+     R+  R ++ ++SF  YL KK K+  ++    +
Sbjct: 76  DLIESVDLNDLYAYLNFVTNERSNTPPARA--RKVASLRSFYDYLYKKAKVINKNPTQEL 133

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
            + K S   P  L   ++  L+D++             R+ AI+ L   CGLR+SE +++
Sbjct: 134 ESPKLSVRQPIYLTLDESKKLLDSI-------DGPFKERDYAIITLFLNCGLRVSELVNI 186

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
              +I DD+  L + GKG+K R V L  +   AI  Y  + P +  +  +  LF   R K
Sbjct: 187 NIDDIKDDK--LTVIGKGNKQRTVYLNDACINAINAYLRVRPKE-GVKDKKALFLSKRLK 243

Query: 237 PLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLST 294
            ++    Q  +++  +   L     +AH LRH+ AT +   G  D+R++Q +LGH  +ST
Sbjct: 244 RISVKTVQYTVKKHLKNANLGGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVST 303

Query: 295 TQIYTNVN 302
           TQIYT+V+
Sbjct: 304 TQIYTHVD 311


>gi|149200435|ref|ZP_01877450.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149200455|ref|ZP_01877470.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149136449|gb|EDM24887.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149136469|gb|EDM24907.1| phage integrase [Lentisphaera araneosa HTCC2155]
          Length = 294

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 108/226 (47%), Gaps = 30/226 (13%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++K     +  F +Y+ KR    E   L +  + +  SLP  L++       D  LL  S
Sbjct: 67  TVKMDRCALSFFYQYVLKR----EWKWLEIVRIPRVKSLPDILSQ-------DETLLILS 115

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS 205
           H  K   AR    L  +Y  GLRISE + +   +I  D+  L ++  KG K R+VPL P 
Sbjct: 116 HLEK---ARYRTCLTAIYSMGLRISEGVRIQTGDICKDRMRLHVRNSKGYKDRLVPL-PQ 171

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---------LNPGVFQRYIRQLRRYLGL 256
           V   +L  Y    + ++ N  L LF    GK          ++ G  Q   +      GL
Sbjct: 172 VTYQMLRDY----WVIHRN-PLLLFPRYAGKSRSNSKTTLHMDKGGVQSAFKAALADSGL 226

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               + H+LRHS+ATHL+  G +LR IQ ILGH   +TT IY++++
Sbjct: 227 AKQVSVHSLRHSYATHLVEAGVNLRVIQEILGHSSPATTAIYSHLS 272


>gi|120553910|ref|YP_958261.1| phage integrase family protein [Marinobacter aquaeolei VT8]
 gi|120323759|gb|ABM18074.1| phage integrase family protein [Marinobacter aquaeolei VT8]
          Length = 283

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 84/158 (53%), Gaps = 9/158 (5%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAIL 211
           + ++ A+L + YGCGLR+SEA+SL  +NI  ++  L I QGKG K R+VPL   +   + 
Sbjct: 117 NPKHRALLLITYGCGLRVSEAVSLQVKNIDGERHLLHIHQGKGGKDRMVPLTDVLLDVLR 176

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
            Y+ L    L L     L     G+ L     Q+  R  +R  G+      H LRH++AT
Sbjct: 177 AYWCLGRPVLWLFPSEVLV----GQHLTATTAQKVYRHAKRLSGVQRRGGIHALRHAYAT 232

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTN----VNSKN 305
           H L +G  L  +Q  LGH  L TT+ Y +    ++S+N
Sbjct: 233 HQLEHGVPLNELQKYLGHSDLRTTERYLHWLPGISSQN 270


>gi|310768311|gb|ADP13261.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 351

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 139/317 (43%), Gaps = 35/317 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF---- 74
           ++WL +L    G S  T+Q Y    R  L +      E   I    Q+S   + ++    
Sbjct: 26  ESWLSHLAAA-GRSPRTVQGYRERVRALLAWC-----EPRGITYAPQVSLAVLESYQRWL 79

Query: 75  -----ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSLP- 126
                   R+    G R L   LS I+  L++L +R   +   + +L +   K+   LP 
Sbjct: 80  QGYRRADGRQLAVNGQRHL---LSAIRMLLRWLLQRHHILYNPAELLEL--PKEERRLPA 134

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           +  +E +   ++ ++   T         RN AIL LL+  G+R SE   L   ++   + 
Sbjct: 135 QVFSEAETRRVLQSLDAGTP-----PGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRG 189

Query: 187 TLRIQ-GKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
            + ++ GKG K R+VP+  +    +  Y  D+ P          LF   +G  L  G   
Sbjct: 190 VVNVRRGKGGKDRVVPVGHAALMWLGRYLQDVRPRLAQRFDSGHLFISHKGTGLAHGTLT 249

Query: 245 RYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
               R +R    L  +   H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V  
Sbjct: 250 AMAGRAIRSGAHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAI 309

Query: 304 KNGGDWMMEIYDQTHPS 320
            +    + +++  THP+
Sbjct: 310 GH----LQKVHAHTHPA 322


>gi|317056716|ref|YP_004105183.1| integrase family protein [Ruminococcus albus 7]
 gi|315448985|gb|ADU22549.1| integrase family protein [Ruminococcus albus 7]
          Length = 335

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 145/306 (47%), Gaps = 31/306 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE---------EKITIQTI------- 63
           ++L  +++ +     T+++Y  D R FL +L    +         E++TI  +       
Sbjct: 15  DFLTYMQLVKARGDRTVEAYYIDLRSFLRYLRIKHKDIDTNNVPFEEMTISEVPFEYVSK 74

Query: 64  -RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
            R +   +   +++  R+  +  R+  R  S +K F  YL  +K +  S+ L    L K 
Sbjct: 75  LRLIDAYDYLKWLADERSNSVKTRA--RKTSALKQFYSYLYLKKNSIPSDPLTQLELPK- 131

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             LP+ L   + L+L D   L +S E+   + R+  ++ L   CG+R+SE   L   +  
Sbjct: 132 --LPKTL--PKYLSLEDAQRLLSSIESDHFE-RDYCMITLFLNCGMRLSELCGLDIGDFS 186

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPG 241
            +  T+R+ GKG K R+V +  +   A+  Y    P  L++  Q   LF   R   ++  
Sbjct: 187 FESGTIRLFGKGQKERVVYINQACIAALKAY---LPIRLSVQTQEKALFLSNRNTRISRR 243

Query: 242 VFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYT 299
             Q  + +  +  GL  L  T H LRH+ AT +   G  D   ++ ILGH  L+TT+IYT
Sbjct: 244 RTQEIVEESLKKAGLGNLGITTHKLRHTAATLMYQYGNVDTLVLKDILGHESLATTEIYT 303

Query: 300 NVNSKN 305
           +++++N
Sbjct: 304 HLSNEN 309


>gi|153931223|ref|YP_001384765.1| phage integrase family site specific recombinase [Clostridium
           botulinum A str. ATCC 19397]
 gi|152927267|gb|ABS32767.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 19397]
          Length = 281

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 135/278 (48%), Gaps = 27/278 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GLS  TL +Y+ +     IF  +  +   TI  +      ++R F++ +R +K+   S+ 
Sbjct: 20  GLSLKTLLNYKYN---LAIFADYLRKPLATINAM------DLRIFLA-QRCKKMKASSVN 69

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             +S +KSF  +L   +   ++  L ++  K+   + RALN+++        LL  + +T
Sbjct: 70  GQISILKSFFGWLHMEEYIPKNPSLKLKQTKQPKRVRRALNQEEL------ELLRQACKT 123

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
                R  A+L  L   G R+SE + +   +I  ++ +L + GKG+K R V       K 
Sbjct: 124 N----REKALLEFLISTGCRLSEVVGIDKNDIDWNEMSLHVIGKGNKERKV-YFDVKTKI 178

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG--VFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +L+ Y      +  +I   LF   +G     G    QR I+++ + +G   S   H  RH
Sbjct: 179 LLKKY----LAIRNDITPALFVASKGTHARLGGRSIQREIKKIAKRVGTEKSIYPHLFRH 234

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           SFAT  +++G  L  +Q I+GH   +TTQIY  ++ +N
Sbjct: 235 SFATGKINSGMPLPVLQHIMGHENPATTQIYAELSEEN 272


>gi|24373597|ref|NP_717640.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24347925|gb|AAN55084.1|AE015645_10 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 319

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 124/284 (43%), Gaps = 64/284 (22%)

Query: 71  IRAFIS---KRRTQKIGDRSLKRSLSGIKS--------------FLKYLKKRKITTESNI 113
           I+AFI+   KR  + +G   + + L+ + +               L YL ++ +  E   
Sbjct: 32  IKAFINFHGKRHPETMGTEEVAQFLTFLANQRNVAINTQKIALNALAYLYQKHLHHELGD 91

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
           L      K   LP  L+  + ++L+ N L          D R+  I+ LLYG GLR+SE 
Sbjct: 92  LGFCYATKQRYLPTVLSPSE-ISLILNEL----------DGRDRLIIELLYGSGLRVSEC 140

Query: 174 LSLTPQNIMDDQSTLRIQ-GKGDKIR------------------------------IVPL 202
           L L  Q+I  + ++L ++ GKG K R                              I P 
Sbjct: 141 LRLRIQDIDIESASLTVRDGKGHKDRQTILSHRCAEKLTTYIEKAIKIQQDDNQQGIGPS 200

Query: 203 LPSV--RK---AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           LP+   RK   A  ++  +  F        P    +    L+  V ++ +    R + + 
Sbjct: 201 LPNALERKYPNAFRQHGWMFIFPSTSTCINPYTGTLCRHHLHQSVIRKALGNAVRNIQMN 260

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              T HT RHSFATHLL  G D+RS+Q +LGH  +STTQIYT+V
Sbjct: 261 KRVTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVSTTQIYTHV 304


>gi|298484756|ref|ZP_07002857.1| Site-specific recombinase, phage integrase family [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298160725|gb|EFI01745.1| Site-specific recombinase, phage integrase family [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 319

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 129/301 (42%), Gaps = 53/301 (17%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W  NL+  R     T ++Y+ D   F  F+   + +       RQ++ + + A+ +    
Sbjct: 32  WFANLDNPR-----TRRAYQNDLTDFCSFIGLASADDF-----RQVTRSHVLAWRADLEQ 81

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVD 139
           + +   +++R L+ + S   +L       ++N +   N       PR   NE +   L D
Sbjct: 82  RGLAGATIRRKLAALASLFDHL------LDNNAVAGGNPVHGVKRPRIETNEGKTPALGD 135

Query: 140 NV---LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194
           +    LL           R+ AIL +L   GLR  EA  LT  ++ + +    LR+ GKG
Sbjct: 136 HQAKQLLEAPDTETLKGLRDRAILAVLLYHGLRREEAAQLTTGDLQERRGIKHLRVHGKG 195

Query: 195 DKIRIVPLLPSVRKAILEYY------DLCPFDLNLNIQLPLFRGIRGKPLNPG------- 241
            KIR +PL P   + I  Y       D  P         PLFR +RG     G       
Sbjct: 196 SKIRFLPLHPMAAERIHAYLEQDVERDTAPG--------PLFRSLRGTTTGAGITANGIY 247

Query: 242 -VFQRYIRQ---LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
            V + Y ++   +  +LG+      H LR + AT+ L +  D+  +Q  LGH  +STT++
Sbjct: 248 TVVEAYAKKAGIVVEHLGV------HGLRATAATNALEHDADIAKVQMWLGHANISTTRL 301

Query: 298 Y 298
           Y
Sbjct: 302 Y 302


>gi|37525093|ref|NP_928437.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37527552|ref|NP_930896.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36784519|emb|CAE13419.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36786987|emb|CAE16061.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 370

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 134/312 (42%), Gaps = 28/312 (8%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFL---AFYTEEKITIQTIRQLSYTEIRAFISKRRT--QK 82
           ER  S+ TL+     T  F+++      Y    IT   + +      R     R+T  + 
Sbjct: 44  ERNWSESTLKVQTHHTYHFILWATERGLYYAADITRPILERYQ----RYLYQYRKTNGEP 99

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL----NEKQALTLV 138
           +  R+ +  L  +K + K+L K+ +   +   ++   +    LPR +      +Q L   
Sbjct: 100 LSTRTQRTQLEPLKVWFKWLTKQNLILANPAADIELPRLEKHLPRYILTIDETEQILAQP 159

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197
           D   L           R+ A++ LL+  G+R  E   L   ++   + T+ I QGKG+K 
Sbjct: 160 DLTTLQ--------GIRDRALMELLWSTGMRRGELTRLDVYSVDGKRKTVTIRQGKGNKD 211

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRG-KPLNPGVFQRYIRQLRRYLG 255
           R++PL       +  Y       L +N  +  LF  + G   L        +      +G
Sbjct: 212 RVLPLGERALSWLQRYQQQVRPQLIVNPDVKALFVAMDGLDGLQANGISNLVTAYINAVG 271

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +      H  RH+ AT +L NG DLR IQ++LGH  + +TQ+YT V+ +     +  ++ 
Sbjct: 272 IEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRA----LQAVHA 327

Query: 316 QTHPSITQKDKK 327
            THP+    D+K
Sbjct: 328 STHPAEQMADEK 339


>gi|222111885|ref|YP_002554149.1| integron integrase [Acidovorax ebreus TPSY]
 gi|221731329|gb|ACM34149.1| integron integrase [Acidovorax ebreus TPSY]
          Length = 332

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 143/310 (46%), Gaps = 60/310 (19%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLS 93
           T Q+Y    R+F++F      +K   +  R++   E+ AF++    ++ +   +  ++ +
Sbjct: 35  TEQAYVDWARRFILF-----HDK---RHPREMGAPEVTAFLTHLAVERNVSASTQNQAKA 86

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            I    K + ++ +     I++ R   K+  LP  L +++    V  +L+H    T+W+ 
Sbjct: 87  AILFLYKEVLQQDLPWLDEIVSAR---KARRLPVVLTQRE----VRELLMHLQ-GTQWL- 137

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKG--DKIRIVP--LLPSVRK 208
                +  LLYG G+RI EAL L  +++  ++  L + +GKG  D++ ++P  L+  +R+
Sbjct: 138 -----VASLLYGTGMRILEALRLRVKDVEFERRELIVREGKGNKDRVTVLPENLITPLRE 192

Query: 209 AILEYYDLCPFDLNLNI----------------------QLPLFRGIRGKPLNPGV---- 242
            +     L   DL+  +                      Q      +R      GV    
Sbjct: 193 QMERARALHRKDLDAGLGAVWLPDALAVKYANAATAWGWQYVFPSAVRSVDPRSGVQRRH 252

Query: 243 ------FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
                  Q+ +    R  G+    T H LRHSFATH+L  G D+R++Q +LGH  +STT 
Sbjct: 253 HLLEQSVQKAVALAARRAGIDKPCTPHVLRHSFATHMLQAGYDIRTVQELLGHKDVSTTM 312

Query: 297 IYTNVNSKNG 306
           IYT+V +K G
Sbjct: 313 IYTHVLNKGG 322


>gi|12667367|gb|AAK01408.1|AF324211_1 site-specific tyrosine recombinase IntIA [Shewanella putrefaciens]
          Length = 317

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 133/309 (43%), Gaps = 58/309 (18%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RG S  T +SY    + F+ F      E +  + + Q        F++ +R   I  + +
Sbjct: 18  RGYSIRTEKSYLYWIKAFINFHHKRHPETMGTEEVAQF-----LTFLANQRNVAINTQKI 72

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
             +       L YL ++ +  E   L      K   LP  L+  + ++L+ N L      
Sbjct: 73  ALNA------LAYLYQKHLHHELGNLGFCYATKQRYLPTVLSPSE-ISLILNEL------ 119

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR--------I 199
               D R+  I+  LYG GLR+SE L L  Q+I  +Q++L ++ GKG K R         
Sbjct: 120 ----DGRDRLIIERLYGSGLRVSECLRLRIQDIDIEQASLTVRDGKGHKDRQTILSHKCA 175

Query: 200 VPLLPSVRKAI-LEYYD--------------------------LCPFDLNLNIQLPLFRG 232
           + L   + KA+ +++ D                          +  F        P    
Sbjct: 176 IKLAAYINKAMEIQHSDNQQGIGHALPNALERKYPNAFKQHGWMFIFPSTTTSINPYTGT 235

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +    L+  V ++ +    R + +    T HT RHSFATHLL +G D+RS+Q +LGH  +
Sbjct: 236 LCRHHLHQSVIRKVLGNAVRNIKITKRVTCHTFRHSFATHLLQSGSDIRSVQELLGHNDV 295

Query: 293 STTQIYTNV 301
           STTQIYT+V
Sbjct: 296 STTQIYTHV 304


>gi|120537151|ref|YP_957208.1| phage integrase family protein [Marinobacter aquaeolei VT8]
 gi|120326986|gb|ABM21293.1| phage integrase family protein [Marinobacter aquaeolei VT8]
          Length = 327

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 135/301 (44%), Gaps = 35/301 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK- 77
           +++LQ L   +G S  T+++Y    R   I+LA      +    I  L    I AF+++ 
Sbjct: 18  RDYLQRL---KGASTHTVRAYRDTLRLLFIYLADTKGCAVADLQISDLRVDAIAAFLTQL 74

Query: 78  --RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN---ILNMRNLKKSNSLPRALNEK 132
              R   +  R+ +R+   I+SF K+L +  +        IL +   K    L   L  +
Sbjct: 75  ESVRANAVVTRNYRRA--AIRSFCKHLIRVDLPHAEQYQRILALPAKKSRQPLATYLEAE 132

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQ 191
           +   ++D    HT+     +  R+  +L  LY  G RISEAL++   ++ +     +R+ 
Sbjct: 133 EVHAIIDQPDRHTA-----LGQRDHGLLLFLYNTGARISEALAVRCADLHLTPPRQVRLH 187

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQL 250
           GKG K R+ PL     +A+       P   N      +F   +G+PL   GV   Y+  L
Sbjct: 188 GKGRKDRLCPLWRETTQAL----QCLPAVRNDTPGSFVFVNRQGEPLTRDGVA--YL--L 239

Query: 251 RRYLGLPLSTTA---------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R+Y+   + TT          H LRHS A  LL +G D+  I+  LGH  ++TT  Y   
Sbjct: 240 RKYVADAIPTTPTLKRRKITPHVLRHSCAVALLQSGVDITVIRDYLGHASVATTSRYLTT 299

Query: 302 N 302
           N
Sbjct: 300 N 300


>gi|326389407|ref|ZP_08210974.1| integrase family protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325994412|gb|EGD52837.1| integrase family protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 330

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 149/308 (48%), Gaps = 34/308 (11%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL----------AFYTE---EKITI 60
           LL+E  N+   +   +  S  T+++Y  D   FL FL            + E     + +
Sbjct: 20  LLEEFLNYFSTV---KARSYNTVKAYAYDLVLFLRFLKQRRGKVSPNVEFDEIDISDVDV 76

Query: 61  QTIRQLSYTEIRA---FISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNM 116
             I  +   ++ A   F++  R+     R+  R ++ ++SF  YL KK K+ +++    +
Sbjct: 77  DLIESVDLNDLYAYLNFVANERSNTPPARA--RKVASLRSFYNYLYKKAKVLSKNPTQEL 134

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
            + K S   P  L   ++  L++++             R+ AI+ L   CGLR+SE +++
Sbjct: 135 ESPKLSVRQPIYLTLDESKKLLNSI-------DGPFKERDYAIITLFLNCGLRVSELVNI 187

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
              +I DD+  L + GKG+K R V L  +   AI  Y ++ P +  +  +  LF   R K
Sbjct: 188 NLDDIKDDK--LTVIGKGNKQRTVYLNDACIDAINTYLEVRPKE-GVKDKKALFLSKRLK 244

Query: 237 PLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLST 294
            ++    Q  +++  +   L     +AH LRH+ AT +   G  D+R++Q +LGH  +ST
Sbjct: 245 RISVKTVQYTVKKHLKNANLEGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVST 304

Query: 295 TQIYTNVN 302
           TQIYT+V+
Sbjct: 305 TQIYTHVD 312


>gi|168205361|ref|ZP_02631366.1| tyrosine recombinase [Clostridium perfringens E str. JGS1987]
 gi|170663182|gb|EDT15865.1| tyrosine recombinase [Clostridium perfringens E str. JGS1987]
          Length = 431

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 139/301 (46%), Gaps = 26/301 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-------EKITIQT-----IRQLS 67
           N+L+N+   +G S  T++ Y+ +      +L    E       E + I+      I+ ++
Sbjct: 127 NYLKNI---KGRSPNTVKGYKSNLNLLFKYLVSLKENTPGTDIENVCIRNVDDTFIKNIT 183

Query: 68  YTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTESNILNMRNLKKSNSL 125
             ++  F+S     +K G  S  R ++ IKSF  +L  K KI  E+  L +   K    L
Sbjct: 184 LMDLYNFLSYVDEVRKNGSYSRARLVAAIKSFFLFLNSKLKIIDENIALELEFPKIEKRL 243

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P  L   QA       +L++  +TK    R+  I  L   CG+R+SE   +   +I  D 
Sbjct: 244 PVYLTLDQA-----KAVLNSMDKTKRYYYRDYCIFTLFLNCGMRLSELCGIKISDIRGD- 297

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQ 244
             L I GKG+K R + L     K+I +Y ++            LF   I  +  N GV +
Sbjct: 298 -LLTIIGKGNKQRTIYLNSECLKSIHDYLNVRGRGNTPEEDKYLFLSRIDKRISNRGVEK 356

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTNVNS 303
              + +          T H LRHS AT L   G  D+RS+Q+ILGH  ++TT++YT+V+ 
Sbjct: 357 LVKKHIENAGFTDKKYTPHKLRHSAATILYKYGNADIRSLQAILGHESIATTELYTHVDD 416

Query: 304 K 304
           +
Sbjct: 417 E 417


>gi|152990726|ref|YP_001356448.1| phage integrase family site specific recombinase [Nitratiruptor sp.
           SB155-2]
 gi|151422587|dbj|BAF70091.1| site-specific recombinase, phage integrase family [Nitratiruptor
           sp. SB155-2]
          Length = 353

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 83/155 (53%), Gaps = 9/155 (5%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPL-LPSVRK 208
           + ARN AI+ ++   G+R+SEA++L  +NI+   D   L+I GKG+K R+V +    +RK
Sbjct: 186 VAARNRAIIKMILYTGIRVSEAMNLEMKNIILQKDVYLLKITGKGNKARVVMIKAQKIRK 245

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRH 267
            + E+      +  L     LF   +G PL      R + ++    G+      AH LRH
Sbjct: 246 DLEEWLTKRNCEKGL-----LFCNKKGSPLTQAYISRMVEKILLSCGIRKEKNGAHMLRH 300

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +FAT L +   DL  +Q  LGH  L T++IYT+ +
Sbjct: 301 TFATLLYNKSKDLVLVQESLGHASLDTSRIYTHFD 335


>gi|37527560|ref|NP_930904.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37527568|ref|NP_930912.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36786995|emb|CAE16069.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36787003|emb|CAE16077.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 376

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 134/312 (42%), Gaps = 28/312 (8%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFL---AFYTEEKITIQTIRQLSYTEIRAFISKRRT--QK 82
           ER  S+ TL+     T  F+++      Y    IT   + +      R     R+T  + 
Sbjct: 44  ERSWSESTLKVQTHHTYHFILWATERGLYYAADITRPILERYQ----RYLYQYRKTNGEP 99

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL----NEKQALTLV 138
           +  R+ +  L  +K + K+L K+ +   +   ++   +    LPR +      +Q L   
Sbjct: 100 LSTRTQRTQLEPLKVWFKWLTKQNLILANPAADIELPRLEKHLPRYILTIDETEQILAQP 159

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197
           D   L           R+ A++ LL+  G+R  E   L   ++   + T+ I QGKG+K 
Sbjct: 160 DLTTLQ--------GIRDRALMELLWSTGMRRGELTRLDVYSVDGKRKTVTIRQGKGNKD 211

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRG-KPLNPGVFQRYIRQLRRYLG 255
           R++PL       +  Y       L +N  +  LF  + G   L        +      +G
Sbjct: 212 RVLPLGERALSWLQRYQQQVRPQLIVNPDVKALFVAMDGLDGLQANGISNLVTAYINAVG 271

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +      H  RH+ AT +L NG DLR IQ++LGH  + +TQ+YT V+ +     +  ++ 
Sbjct: 272 IEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRA----LQAVHA 327

Query: 316 QTHPSITQKDKK 327
            THP+    D+K
Sbjct: 328 STHPAEQMADEK 339


>gi|296163748|ref|ZP_06846456.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886009|gb|EFG65919.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 331

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 137/324 (42%), Gaps = 49/324 (15%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF------YT 54
           M    LP +V       ++ + Q L  ++GLS  T+ SY  DT  F + LAF      +T
Sbjct: 1   MSAAGLPSLV-------QRFFTQRLLEQQGLSSHTVASYR-DT--FRLLLAFATKRIGHT 50

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK---ITTES 111
             K+  +    L   E    +   R   +  R+ +  L+ + +F +++   +        
Sbjct: 51  PSKLRTEDFDALLIEEFLQHLEHGRGNSVRTRNTR--LAAVHAFFRFVAVSEPALFLQCQ 108

Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
            IL + + +  +     L E +A  LV    + T     WI  R+  +L +    GLR S
Sbjct: 109 RILAIPSKRCEHGPVEFLTESEAAALVGAPDVRT-----WIGNRDRTLLLVAVQTGLRNS 163

Query: 172 EALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLP---SVRKAILEYYDLCPFDLNLNIQL 227
           E  SL  Q++ +   + +R  GKG K+R  PL P   +V KA L Y    P D       
Sbjct: 164 ELTSLRRQDVVLGTGAHVRCLGKGRKMRCTPLRPDVVAVMKAWLRYQPGEPDD------- 216

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL---------STTAHTLRHSFATHLLSNGG 278
           P+F   RG  L+    QR +    R + +           S T HTLRH  A  LL +G 
Sbjct: 217 PVFPSSRGGHLSADALQRLVS---RNVAIACHSCPSLKDKSVTPHTLRHGAAMSLLHHGV 273

Query: 279 DLRSIQSILGHFRLSTTQIYTNVN 302
           DL  I   LGH    TT IY + +
Sbjct: 274 DLSVIALWLGHESSETTHIYLHAD 297


>gi|256840313|ref|ZP_05545821.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737585|gb|EEU50911.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 350

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 111/225 (49%), Gaps = 17/225 (7%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALN-EKQALTLVDNVLLHTSHET 149
           LS ++ FLKYL  R I+  S  L   N+  + NS  + +   KQA+    +VLL   ++ 
Sbjct: 91  LSALRVFLKYLSFRDISYMSVFLQAENVPNEKNSKRKVIGLSKQAV----DVLLSMPNQG 146

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVR 207
             I  R+  ++ LLY   +RI+E L+L   NI+ D  +  + + GKG K R +PLL    
Sbjct: 147 STIGFRDYTLMLLLYSTAVRINELLTLKISNIVIDCVKPHIIVIGKGRKKRPIPLLAKPA 206

Query: 208 KAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-----RRYLGLPLS 259
           + +  Y   Y     D N  +     +GI   P++     + +++       R   +P+ 
Sbjct: 207 QCLKRYLIKYHPKQNDANALLFCSKSKGIYV-PMSAENVNKMLKKYATMAHERCQDVPMD 265

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             AH  RH+ A+H L NG ++  I  +LGH  + TT +Y ++ +K
Sbjct: 266 LHAHQFRHAKASHWLENGMNIAQISYLLGHESIQTTMVYLDITTK 310


>gi|259907778|ref|YP_002648134.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|259909773|ref|YP_002650129.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|259909780|ref|YP_002650136.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224963400|emb|CAX54888.1| integrase [Erwinia pyrifoliae Ep1/96]
 gi|224965395|emb|CAX56927.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
 gi|224965402|emb|CAX56934.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
 gi|283477639|emb|CAY73555.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
 gi|283479866|emb|CAY75782.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
 gi|283479875|emb|CAY75791.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 356

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 149/331 (45%), Gaps = 49/331 (14%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++WL +L    G S  T+Q Y     + L FLA+   E   I+   Q+S   + ++    
Sbjct: 26  ESWLAHLAAA-GRSPRTVQGYR---ERVLAFLAWC--EPRGIRYAPQVSLAVLESYQRYL 79

Query: 79  RTQKIGDRSL------KRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSLP-RAL 129
           R  +  D +L      +  LS I+  L++L +R   +   + +L +   K+   LP +  
Sbjct: 80  RGYRKADGTLLAVNGQRHLLSAIRMLLRWLLQRHHILYNPAELLAL--PKEERRLPAQVF 137

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +E +   ++ ++   T         RN AIL LL+  G+R +E  +L   ++   +  + 
Sbjct: 138 SEAETRRVLQSLDAGTP-----PGLRNRAILELLWSTGIRRTELANLLLSDVDAVRGVVN 192

Query: 190 IQ-GKGDKIRIVPL-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
           ++ GKG + R+VP+           L  VR  + + +D             LF   +G  
Sbjct: 193 VRRGKGGRDRVVPVGHTALIWLGRYLKDVRPRLAQRFDSGH----------LFISHKGTG 242

Query: 238 LNPGVFQRYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           L          R +R    L  +   H  RHS AT +L NG D R IQ+ILGH +L TTQ
Sbjct: 243 LGRSTLTAMAGRAIREGAHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQ 302

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
           IYT V   +    + +++  THP+  ++ +K
Sbjct: 303 IYTRVAIGH----LQKVHAHTHPAEKRRTEK 329


>gi|125623479|ref|YP_001031962.1| integrase-recombinase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124492287|emb|CAL97219.1| integrase-recombinase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070227|gb|ADJ59627.1| integrase-recombinase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 311

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 138/291 (47%), Gaps = 31/291 (10%)

Query: 25  LEIERG-LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           LE++ G  SK T+++YE    +F+ F      +++ I  I ++ Y   + FIS+     +
Sbjct: 12  LELKLGNYSKRTMETYEQHIDKFIDFYRKEICKEMDIYAINKMHY---KLFISQLLDNSL 68

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN--- 140
               +   L   K+F  YL + ++   S + +++ LK++         KQALT  ++   
Sbjct: 69  RATYINAILKSNKAFYSYLIREQVLKTSPMDSIKLLKET---------KQALTTFNDDEV 119

Query: 141 -VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             +L+  +   +++ARN  I+ +L   G+RISE +++   ++ D    +R+ GKGDK R+
Sbjct: 120 KAMLNVWNFNTYLNARNKCIIAVLADTGIRISELINIKDSDLTD--QYIRVLGKGDKWRV 177

Query: 200 VPLLPSVRKAILEYYDLCPFDLN---------LNIQLPLFRGIRGKPLNPGV-FQRYIRQ 249
           VP+   +   + +Y  L     N           +   LF G  G+ +      +  I Q
Sbjct: 178 VPISNELNYLLTKYKRLRDNHFNKIRNRNGKVRELDSELFLGKTGRSIKTITNIEVMITQ 237

Query: 250 --LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             L+  +   +  + H  RH +    L  G D+ +I  +LGH  LSTTQIY
Sbjct: 238 TGLQANVRASVRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIY 288


>gi|257413888|ref|ZP_04744580.2| putative tyrosine recombinase XerD [Roseburia intestinalis L1-82]
 gi|257201913|gb|EEV00198.1| putative tyrosine recombinase XerD [Roseburia intestinalis L1-82]
          Length = 334

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 145/317 (45%), Gaps = 32/317 (10%)

Query: 14  LLKERQN-WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           LLKE  N +L   + ++ L   T+++Y+ D  QF+  +     +K  +            
Sbjct: 24  LLKEEINKYLNYCKFQKELKDKTIKAYKADLEQFITVIGENNPDKEVLNAYL-------- 75

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN-LKKSNSLPRALNE 131
            ++ +   QK    ++KR ++ +K+   YL++ ++   +    ++   ++   LP+ +  
Sbjct: 76  VYLHRMYKQK----TVKRKIASVKALFHYLEEEELIEINPFHKVKTKFREEVILPKII-- 129

Query: 132 KQALTLVDNVLLHTSHE------TKW---IDARNSAILYLLYGCGLRISEALSLTPQNIM 182
                +++ +L H   E      ++W   I  R+ A++  L+  GLRISE   L  + + 
Sbjct: 130 --PRDIIEQLLNHLYKERSIKEYSEWRKKIILRDIAVVETLFSTGLRISELCHLQNKYVD 187

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
                L IQGKG K R + +  +   +IL  Y    F+  +  Q   F    G  L+   
Sbjct: 188 LKNGVLCIQGKGGKERYLQIGNNDVLSILNAYKK-SFEDEIKKQGYFFVNRYGNALSEQS 246

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +  I +    +   ++ T H  RHSFAT+L+    ++R IQ +LGH  ++TTQIYT V 
Sbjct: 247 ARSMIHKYAGEIQADINITPHMFRHSFATYLMEEDVNIRYIQKMLGHASITTTQIYTYVT 306

Query: 303 SKNGGDWMMEIYDQTHP 319
           ++       EI    HP
Sbjct: 307 TEKEK----EILQTRHP 319


>gi|254465304|ref|ZP_05078715.1| phage integrase [Rhodobacterales bacterium Y4I]
 gi|206686212|gb|EDZ46694.1| phage integrase [Rhodobacterales bacterium Y4I]
          Length = 292

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 78/156 (50%), Gaps = 21/156 (13%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYD- 215
           A L + YG GLR SE  +L   +I  D+  + + QGKG K R V L P +   + EY+  
Sbjct: 128 AALSISYGAGLRASEVCNLKVSDIDSDRMLIHVEQGKGRKDRKVMLSPGLLNLLREYWRE 187

Query: 216 ------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHS 268
                 L P    +N            P++     R     +   G+    +T HTLRHS
Sbjct: 188 ARPEGWLFPGKPKIN------------PVSSRQLHRAFSSAKLIAGIKKPGSTLHTLRHS 235

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           FATHLL  G D+R IQ +LGH +L TT+ YT+V +K
Sbjct: 236 FATHLLEAGTDVRVIQVLLGHAKLETTERYTHVATK 271


>gi|291535839|emb|CBL08951.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
          Length = 312

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 145/317 (45%), Gaps = 32/317 (10%)

Query: 14  LLKERQN-WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           LLKE  N +L   + ++ L   T+++Y+ D  QF+  +     +K  +            
Sbjct: 2   LLKEEINKYLNYCKFQKELKDKTIKAYKADLEQFITVIGENNPDKEVLNAYL-------- 53

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN-LKKSNSLPRALNE 131
            ++ +   QK    ++KR ++ +K+   YL++ ++   +    ++   ++   LP+ +  
Sbjct: 54  VYLHRMYKQK----TVKRKIASVKALFHYLEEEELIEINPFHKVKTKFREEVILPKII-- 107

Query: 132 KQALTLVDNVLLHTSHE------TKW---IDARNSAILYLLYGCGLRISEALSLTPQNIM 182
                +++ +L H   E      ++W   I  R+ A++  L+  GLRISE   L  + + 
Sbjct: 108 --PRDIIEQLLNHLYKERSIKEYSEWRKKIILRDIAVVETLFSTGLRISELCHLQNKYVD 165

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
                L IQGKG K R + +  +   +IL  Y    F+  +  Q   F    G  L+   
Sbjct: 166 LKNGVLCIQGKGGKERYLQIGNNDVLSILNAYK-KSFEDEIKKQGYFFVNRYGNALSEQS 224

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +  I +    +   ++ T H  RHSFAT+L+    ++R IQ +LGH  ++TTQIYT V 
Sbjct: 225 ARSMIHKYAGEIQADINITPHMFRHSFATYLMEEDVNIRYIQKMLGHASITTTQIYTYVT 284

Query: 303 SKNGGDWMMEIYDQTHP 319
           ++       EI    HP
Sbjct: 285 TEKEK----EILQTRHP 297


>gi|170694112|ref|ZP_02885267.1| integrase family protein [Burkholderia graminis C4D1M]
 gi|170696177|ref|ZP_02887311.1| integrase family protein [Burkholderia graminis C4D1M]
 gi|170138905|gb|EDT07099.1| integrase family protein [Burkholderia graminis C4D1M]
 gi|170140852|gb|EDT09025.1| integrase family protein [Burkholderia graminis C4D1M]
          Length = 291

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 130/288 (45%), Gaps = 26/288 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ+ + ++ + R L+  T   Y    RQF  FL     +  T++ +R+     +   IS 
Sbjct: 12  RQHMIDDMRM-RKLAPQTQAGYVRVVRQFAAFLG-RPPDTATVEDLRRYQLHLVDHGISP 69

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    SL  +++G+K F +      +     +  M+ ++   +LP  L+  +   L
Sbjct: 70  V--------SLNAAITGLKFFFEI----TLNQPGLMARMQPVRVPRTLPVVLSPDEVARL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
           +     +  H+T          L + YG GLR SE ++L   ++   + TLRI QGKG +
Sbjct: 118 IAAAG-NLKHQTA---------LSVAYGAGLRASEVVALKVGDVDSQRMTLRIEQGKGRR 167

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLG 255
            R   L P + + +  ++ +      +     LF G+    PL+     R I        
Sbjct: 168 DRYAMLSPVLLERLRVWWRVAHAQGRMLEGGWLFPGLDPVDPLSTRQLNRAIHAAAEEAH 227

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           L    + HTLRHSFATHLL    D+R IQ +LGH +L TT +YT V +
Sbjct: 228 LGKRVSMHTLRHSFATHLLEQKEDIRVIQVLLGHKKLETTSLYTQVAT 275


>gi|163796175|ref|ZP_02190137.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|163797772|ref|ZP_02191719.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|159176992|gb|EDP61556.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|159178634|gb|EDP63174.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
          Length = 276

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 86/168 (51%), Gaps = 12/168 (7%)

Query: 141 VLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGD 195
           V+L      ++++A    ++ A L   Y  GLR+SE ++L   ++   +  +R++ GKG 
Sbjct: 93  VVLSADEVVRFLEAVASLKSRAALTTAYAAGLRVSEVVALRVGDVDSGRMVIRVEHGKGG 152

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYL 254
           K R V L   +   +  Y+ L         +  LF G    KP++  V     R  R   
Sbjct: 153 KDRYVMLSAQLLGILRTYWRLA------RPEHWLFPGREASKPIDVQVLHAACRSARAAA 206

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           GL    T HTLRHSFATHLL +G D+R IQ +LGH  LSTT  YT V+
Sbjct: 207 GLDKRVTVHTLRHSFATHLLESGTDIRIIQVLLGHANLSTTARYTQVS 254


>gi|118444090|ref|YP_878186.1| integrase/recombinase [Clostridium novyi NT]
 gi|118134546|gb|ABK61590.1| integrase/recombinase, putative [Clostridium novyi NT]
          Length = 274

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 108/233 (46%), Gaps = 31/233 (13%)

Query: 75  ISKRRTQKIGDRSLK-----RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           I + +   I DR LK     R L  I  FLK+     IT +   +    ++  N L   L
Sbjct: 51  IDEYKNHLIYDRGLKIKTINRKLVSINQFLKF---NNITVD---IRQEKVQMQNFLDDIL 104

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           + +    LV+          K  D R  AI+Y LY  G+R+SE L LT  +I   + ++ 
Sbjct: 105 SNEDVKALVNATY-------KKDDLRARAIIYTLYYTGMRVSEMLQLTIYDIK--KQSIT 155

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYI 247
           I GKG K R V  +P+  K I E Y      +N+ I+    LF G RG P+N       I
Sbjct: 156 ILGKGSKHREV-FVPNKLKDIWEAY------MNVRIKKGTALFTGKRG-PINRKTVDSLI 207

Query: 248 RQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           ++     G+  S   AH  RH +  +L   G D+ +I  I GH  ++TT+IYT
Sbjct: 208 KEYAALAGVNKSKAHAHNFRHLYCKNLADKGIDISTIADIAGHQNINTTRIYT 260


>gi|227818829|ref|YP_002822800.1| transposase number 1 for insertion sequence NGRIS-16a
           [Sinorhizobium fredii NGR234]
 gi|227819104|ref|YP_002823075.1| transposase number 1 for insertion sequence NGRIS-16b
           [Sinorhizobium fredii NGR234]
 gi|227819152|ref|YP_002823123.1| transposase number 1 for insertion sequence NGRIS-16c
           [Sinorhizobium fredii NGR234]
 gi|227819580|ref|YP_002823551.1| transposase number 1 for insertion sequence NGRIS-16d
           [Sinorhizobium fredii NGR234]
 gi|227819591|ref|YP_002823562.1| transposase number 1 for insertion sequence NGRIS-16e
           [Sinorhizobium fredii NGR234]
 gi|227820371|ref|YP_002824342.1| transposase number 1 for insertion sequence NGRIS-16f
           [Sinorhizobium fredii NGR234]
 gi|227822209|ref|YP_002826180.1| putative transposase number 1 for insertion sequence NGRIS-16h
           [Sinorhizobium fredii NGR234]
 gi|227823694|ref|YP_002827667.1| putative transposase number 1 for insertion sequence NGRIS-16
           [Sinorhizobium fredii NGR234]
 gi|36959087|gb|AAQ87512.1| Putative integrase/recombinase Y4QK [Sinorhizobium fredii NGR234]
 gi|227337828|gb|ACP22047.1| putative transposase number 1 for insertion sequence NGRIS-16a
           [Sinorhizobium fredii NGR234]
 gi|227338103|gb|ACP22322.1| putative transposase number 1 for insertion sequence NGRIS-16b
           [Sinorhizobium fredii NGR234]
 gi|227338151|gb|ACP22370.1| putative transposase number 1 for insertion sequence NGRIS-16c
           [Sinorhizobium fredii NGR234]
 gi|227338579|gb|ACP22798.1| putative transposase number 1 for insertion sequence NGRIS-16d
           [Sinorhizobium fredii NGR234]
 gi|227338590|gb|ACP22809.1| putative transposase number 1 for insertion sequence NGRIS-16e
           [Sinorhizobium fredii NGR234]
 gi|227339370|gb|ACP23589.1| putative transposase number 1 for insertion sequence NGRIS-16f
           [Sinorhizobium fredii NGR234]
 gi|227341209|gb|ACP25427.1| putative transposase number 1 for insertion sequence NGRIS-16h
           [Sinorhizobium fredii NGR234]
 gi|227342696|gb|ACP26914.1| putative transposase number 1 for insertion sequence NGRIS-16
           [Sinorhizobium fredii NGR234]
          Length = 286

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/141 (40%), Positives = 76/141 (53%), Gaps = 8/141 (5%)

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           Y  GLR +E +SL   NI  ++  +RI+ GKG K R V L   +   +  Y+ L      
Sbjct: 130 YAAGLRATETVSLKVSNIDGERGVIRIEHGKGGKDRNVMLSAQLLHILRVYWKL------ 183

Query: 223 LNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
           +  Q+ LF G    KP++  V     R  R   G+    + HTLRHSFATHLL +G D+R
Sbjct: 184 VRPQVWLFPGRDESKPIDVQVLHSACRSARAAAGIDKRISVHTLRHSFATHLLESGTDIR 243

Query: 282 SIQSILGHFRLSTTQIYTNVN 302
            IQ +LGH  LSTT  YT V+
Sbjct: 244 IIQVLLGHNNLSTTARYTKVS 264


>gi|145306755|ref|YP_001144419.1| integrase/recombinase [Magnetospirillum gryphiswaldense MSR-1]
 gi|144901521|emb|CAM78243.1| integrase/recombinase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 302

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 131/290 (45%), Gaps = 26/290 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ  ++++ + R  S+ T ++Y  D  +F  FL   + +  T + +RQ    +  + +  
Sbjct: 14  RQRLIEDMTLRR-FSRETQRNYIRDVGRFAAFLG-RSPDTATAEDVRQFQLEQRESGVPV 71

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                        +++ I S L++     I        +  +     LP  L+ ++   L
Sbjct: 72  P------------TMNSIVSALRFFFTHTIDRPDLARKLMRISHPRQLPMVLSREEVARL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDK 196
           ++               ++ A L + YG GLR++E  +L  ++I  ++  +R++ GKG +
Sbjct: 120 LNATTC----------LKHQAALSVAYGAGLRVAEVSALKVRDIDSERMLIRVERGKGGR 169

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLG 255
            R   L P +   + +++        ++    LF G    KP++     R + +  +   
Sbjct: 170 SRNAMLSPDLLTLLRQWWAFGRQQGVMHRDGWLFPGQHTMKPISTRQLHRIVVEAAQAAE 229

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +      HTLRHSFATHLL +G D+R IQ +LGH +L  T +YT V ++ 
Sbjct: 230 IAKRVGPHTLRHSFATHLLEDGVDIRVIQVLLGHSKLENTALYTKVATRT 279


>gi|326331386|ref|ZP_08197676.1| tyrosine recombinase XerC [Nocardioidaceae bacterium Broad-1]
 gi|325950642|gb|EGD42692.1| tyrosine recombinase XerC [Nocardioidaceae bacterium Broad-1]
          Length = 331

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 130/306 (42%), Gaps = 35/306 (11%)

Query: 29  RGLSKLTLQSYECD----TRQFLI---------FLAFYTEEKITIQTIRQLSYTEIRAFI 75
           RGL+  +  +Y  D     RQ  +          LA      +T Q +R ++Y  +R   
Sbjct: 19  RGLNDKSRSAYRQDIVAWARQLHVDAGGEPDADVLALVPISALTDQNVR-IAYRSLR--- 74

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR--ALNEKQ 133
                +     + +R +  ++ F  +L+          L +   ++ + LP   +++E +
Sbjct: 75  -----ENSAAATCQRRVGTLRLFTHWLQLEGHLLVDPTLRIEAPERPSRLPAGWSVDELR 129

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRI 190
            L  V +     +   +W   R+ AI  +L   G+R +E   LT  +I    D ++ +R+
Sbjct: 130 RLARVASTPREGTDRRRW-PTRDRAIFAVLVTTGVRAAELCDLTVGSIRREPDGETLVRV 188

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYI 247
            GKGDK R +PL P    A+  Y  L   +     + P   LF    GK L PG     +
Sbjct: 189 IGKGDKQRNLPLPPEAVDAVDAY--LAELEARFGTRDPADNLFVLTSGKQLRPGALNHLV 246

Query: 248 RQLRRYLGLP--LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
               R  G+P      AH  RHS A  L+ +G  + ++Q +LGH  L TT IY    + +
Sbjct: 247 ETWIRLAGVPKQPGEAAHAFRHSAAKGLIRSGVPVPAVQGLLGHEDLKTTGIYVKATASD 306

Query: 306 GGDWMM 311
             D ++
Sbjct: 307 TRDAVL 312


>gi|310778330|ref|YP_003966663.1| integrase family protein [Ilyobacter polytropus DSM 2926]
 gi|309747653|gb|ADO82315.1| integrase family protein [Ilyobacter polytropus DSM 2926]
          Length = 297

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 131/287 (45%), Gaps = 11/287 (3%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++   E   G S  T++S++ D  Q    L  Y  +K  I   + +    +R F+ + 
Sbjct: 11  KDFIYFEEFGDGKSLNTIKSFKKDLGQ----LRDYLSKKENINNPKDIKEMALRGFLVEL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + + IG RSL R +S +++F KYLK +    ++  + +        LP  L +++   + 
Sbjct: 67  QKENIGKRSLNRKISSLRTFFKYLKNQGYIEKNPTILLTGPAFKADLPEILTKEEIDRIR 126

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           + + +  ++       R+  I+ LLY  G+R SE LSL       ++  LR+ G G + R
Sbjct: 127 EVIDIEKTN-----GIRDRLIVELLYSSGIRTSELLSLGESLFDLEKRQLRVTG-GKQPR 180

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           IV      R+    Y +              LF    G  L+    +R I +  +   + 
Sbjct: 181 IVFFSERTREYFKRYVESKKKKYRAKYTADILFVNGSGTRLSDRSLRRIIERYAKKAEIQ 240

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              + HT RH+F  ++L++G  L  +Q ++GH  + +T+IY    +K
Sbjct: 241 KEISPHTFRHTFGVYMLTHGMGLMHLQELMGHVSVESTKIYEEFVNK 287


>gi|120553909|ref|YP_958260.1| integron integrase [Marinobacter aquaeolei VT8]
 gi|120323758|gb|ABM18073.1| integron integrase [Marinobacter aquaeolei VT8]
          Length = 329

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 139/322 (43%), Gaps = 59/322 (18%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+N    RGL+  T ++Y    ++F+ F      E         +   E+ AF+S    Q
Sbjct: 18  LRNFIRLRGLAYKTEKTYVFWIKRFIRFHGRKHPE--------SMGTAEVEAFLSHLVLQ 69

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
              + S+      + + + +L +  + T    L     KK   LP   +  +A  ++DN 
Sbjct: 70  --ANVSVATQRVALNALI-FLYREFLGTPLENLEYEAAKKPKRLPVVFSPDEARRVIDN- 125

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIV 200
                     ++     +  L+YG GLRI+EAL L  +++    Q  +  +GKG K R+ 
Sbjct: 126 ----------LEGEFKLVAMLIYGAGLRINEALRLRVKDVDFGMQQLIVREGKGSKDRVT 175

Query: 201 --------PLLPSVRKAILEY-YDLC--------PFDLN------------------LNI 225
                   PL   +  A++++  DL         P  L+                  L++
Sbjct: 176 LLPDRLIQPLQDQIHAALMQHQADLAKGCGSVYMPAGLSKKYPNASQEPDWQYVFPALDL 235

Query: 226 QLPLFRGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
            +    GIR +  +     Q++ +   R  G+     +HT RHSFAT LL +G DLR+IQ
Sbjct: 236 SIDPRSGIRRRHHMMDRTVQKHFKHAIRKAGIHKPAGSHTFRHSFATRLLESGYDLRTIQ 295

Query: 285 SILGHFRLSTTQIYTNVNSKNG 306
            +LGH  + TT+IYT+V  K G
Sbjct: 296 KLLGHSDVRTTEIYTHVVRKGG 317


>gi|186471690|ref|YP_001863008.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184197999|gb|ACC75962.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 343

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 139/307 (45%), Gaps = 32/307 (10%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR- 72
           LL+  Q++L  L   RG+S  T++SY       L F A  +   I    +  L+   ++ 
Sbjct: 13  LLRFFQDYLPTL---RGVSVHTIRSYRDAVVLLLQFTARESRRPIEALDLSDLNADHVKQ 69

Query: 73  --AFISKRRTQKIGDRSLKRSLSGIKSFLKYL---KKRKITTESNILNMRNLKKSNSLPR 127
              F+   R   I  R+ +  L+ I +F +++       +     +L +   + +   P 
Sbjct: 70  FLKFLESERGNSIATRNAR--LAAIHAFARFVIAEHPEHLAPFQQVLGIPFKRGAREAPI 127

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQS 186
              E   +    + LL T  +++    R+ A+  L++  G R+ E L+L   ++ +D   
Sbjct: 128 EYLETAEI----DTLLTTIDQSRPAGQRDFALFALMFNTGARVQEILNLRICDLRLDPPP 183

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQR 245
            +R+ GKG+K+R+ P+ P   + + E     P     + +LP+F   RG  ++  GV  R
Sbjct: 184 QVRLHGKGNKVRVCPIWPRTAQLLRELIRTRPLVAQGSAELPVFVNCRGTQMSRFGV--R 241

Query: 246 YIRQLRRYLGLPLSTT----------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           Y+  LR+Y+ L  ST            H+LRH+ A  LL  G D  +I   LGH  L+TT
Sbjct: 242 YL--LRKYM-LIASTRNPTLAHKEIHPHSLRHTTAIQLLKAGVDFATISQWLGHASLNTT 298

Query: 296 QIYTNVN 302
             Y   +
Sbjct: 299 MRYARAD 305


>gi|114566841|ref|YP_753995.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337776|gb|ABI68624.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 306

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 133/295 (45%), Gaps = 15/295 (5%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R +SK TL +Y    ++F      Y  EK  I+     S T     I  ++ +     ++
Sbjct: 17  RQISKATLTNYMGCLKEFHT----YCLEKEIIEVTDITSNTIKSYLIYCQKERGNNPTTI 72

Query: 89  KRSLSGIKSFLKYLKKRKITTE-SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
              L  IK F  YL++ +I  E +N ++  N  K+N      ++KQ   ++       + 
Sbjct: 73  NSKLRSIKIFFNYLQEIEIFNEKNNPIHKVNYIKANVKIEVFSDKQINEMLSYYRRIKTR 132

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
           +      R+S I+  L G G+R+ E  +L   ++  +   + + GK      +P+   ++
Sbjct: 133 DKSLYAYRDSTIIITLLGTGMRLGELCNLKWSDVDFENQHIILFGKLQTQTSIPMADKLK 192

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGI--RGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHT 264
             + EY   C        +LP+F  +   GKPL+P   +   ++L++ +  P +   A+ 
Sbjct: 193 SELQEYKLFCQKQFG---KLPMFVFVDRTGKPLSPNAVKNMFKRLKQIMNFPNVRCCAYD 249

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            RH+FA   L NGGD+ ++Q +L H   + T+ Y  +     G  + E  +Q +P
Sbjct: 250 FRHTFAHRFLMNGGDVFTLQKLLRHSSPAMTERYLAI----WGTALQERANQFNP 300


>gi|269102990|ref|ZP_06155687.1| phage integrase family protein [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162888|gb|EEZ41384.1| phage integrase family protein [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 291

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 103/223 (46%), Gaps = 32/223 (14%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++K   +G++ F K++ +R    +   LN+       +LP  L   +   L++       
Sbjct: 71  TVKIDRNGLQFFFKHVLQR----DWEWLNIVKPPHVKTLPDILTPSEVSLLINAT----- 121

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205
                   R       LY  GLR+ E L+LT  +I   +  + I QGKG K R +PL   
Sbjct: 122 -----SQLRYQVFFLTLYSLGLRLGEGLNLTVGDIDSHRMLVHIRQGKGGKDRFIPLPRR 176

Query: 206 VRKAILEYYD-------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
              A+  Y+        L P   NLN  +          ++ G  Q+ ++ + +  G+  
Sbjct: 177 TLYALRYYWQTHKNSRYLFPSQFNLNHTV----------MDRGGVQKAMKAVIKSCGITK 226

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           S + H LRHS+ATHLL  G DLRS+Q +LGH  L+ T  YT++
Sbjct: 227 SISPHNLRHSYATHLLERGLDLRSVQHLLGHNSLNATAKYTHL 269


>gi|319789925|ref|YP_004151558.1| integrase family protein [Thermovibrio ammonificans HB-1]
 gi|317114427|gb|ADU96917.1| integrase family protein [Thermovibrio ammonificans HB-1]
          Length = 271

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 113/236 (47%), Gaps = 36/236 (15%)

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           + R +S + +F  +L   +I  ++ +  ++R  K    +P AL  ++    V+ VL    
Sbjct: 64  INRRISALNTFFNFLVDMEIIDKNPVKPSLRIKKVKQRVPEALTPEE----VEKVLEAAR 119

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLP 204
              +        ILY    CGLRISE LSLT ++I++   +  L++ GKG K R +PL  
Sbjct: 120 KRGERDYLMFKTILY----CGLRISELLSLTKESIVEFKGRPVLKVIGKGGKERFIPLSR 175

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ--RYI-RQLRRYLGLPLSTT 261
           S  + ++ Y +                 + G+ L P  +Q  +YI  ++R   G+P+   
Sbjct: 176 SFARELISYAE----------------RVEGEKLFPLSYQGAKYIFNRVRDETGVPIH-- 217

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            H LRH+FAT L+  G D+R IQ+ LGH   +T+  Y  V      + M ++ D  
Sbjct: 218 PHKLRHTFATVLVDRGVDIRVIQAFLGHASPNTSARYAKVRD----ELMFKVVDSV 269


>gi|60256815|gb|AAX14926.1| integrase [Xanthomonas perforans]
          Length = 339

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 84/177 (47%), Gaps = 37/177 (20%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           LLYG G+R+ E L L  +++ D +  + ++ GKG K R VPL  S+++ +    +     
Sbjct: 141 LLYGSGMRLLECLRLRIKDVDDARGEIVVRDGKGGKDRRVPLPRSLKEVLQRQRERALLL 200

Query: 221 LNL-------NIQLP--LFRGIRGKPLNPG---------------------------VFQ 244
                      + LP  L R        PG                           V Q
Sbjct: 201 HAADLAAGTGRVFLPHALARKYPNAGAEPGWQYLFPSAPQSRDPRSGRVGRHHVSEEVLQ 260

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R ++  RR+ G+    T HTLRHSFATHLL  G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 261 RAVQMARRHAGIVKPATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVATTQIYTHV 317


>gi|168698681|ref|ZP_02730958.1| phage integrase family protein [Gemmata obscuriglobus UQM 2246]
          Length = 303

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 124/269 (46%), Gaps = 20/269 (7%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T +++  D ++F ++ A    E   +  +     T+ R  + + + Q +   ++ R+L  
Sbjct: 35  TRKAFTLDIKKFAVWFAEVNREPFRVGRVTMRDVTDFREHLRREKGQAVS--TVNRALVA 92

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           ++ +  +L ++     +  + ++ L++    P+ L   Q   L+  V L         D 
Sbjct: 93  VRRYFGWLAEQGHVASNPAVGVKELRRVQLAPKGLQRDQVRKLLREVELRQ-------DV 145

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQ-GKGDKIRIVPLLPSVRKAIL 211
           R SA+ +LL   G RI + ++L  Q++M  +   T+  + GKG K R VPL    RK+I 
Sbjct: 146 RASAVFHLLLYTGCRIGDLVNLKLQDLMLTERSGTVVFRLGKGGKQRSVPLPLPARKSIQ 205

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
            Y D  P    +  Q+ +F G RG PL     +    +    +G+ L    H  RH+ A 
Sbjct: 206 AYLDTRP---PVKEQI-VFIGERG-PLTDRGVRAMCDKYSALIGVKLHP--HLFRHTMAH 258

Query: 272 HLLS-NGGDLRSIQSILGHFRLSTTQIYT 299
             L+ N  DL ++  +LGH  L+TT  Y 
Sbjct: 259 QFLADNENDLVALAQLLGHENLNTTARYA 287


>gi|28558853|ref|NP_788113.1| putative integrase/recombinase [Ruegeria sp. PR1b]
 gi|22726404|gb|AAN05199.1| RC126 [Ruegeria sp. PR1b]
          Length = 313

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 138/306 (45%), Gaps = 24/306 (7%)

Query: 14  LLKERQNWLQNLEIER-GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           + K R N  +N   E+ GLS+ +L++Y  D      F  F  + K+    +      +I 
Sbjct: 1   MTKIRINDFENYCREQLGLSEHSLRAYRQD---LAAFAKFKQKAKLNDPPL----AADII 53

Query: 73  AFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALN 130
            F    R  Q +   +++R L  ++S+  +L +   +  S    +R +++    LPR ++
Sbjct: 54  DFQKDLREEQGVSPATIRRRLVTLRSYYGWLAENDTSCPSPFEGLRLDMRVPKRLPRPVD 113

Query: 131 EKQALTLVDN----VLLHTSHE---TKWIDAR--NSAILYLLYGCGLRISEALSLTPQNI 181
                 +  +    V L  S E    K I A      I  LL   GLRI E  SL   ++
Sbjct: 114 RPTLGAVFRSAQHIVQLDPSDELSVPKEIPAAQITGLIARLLIVTGLRIGELTSLRVCDV 173

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLN 239
               + +R++GKGD+ R V +     +   + +  D C        Q  LF    G  L 
Sbjct: 174 SGAATQIRVRGKGDRERTVYVANDRLQTDFKRFWEDRCD---AAGSQAWLFTNSMGDRLT 230

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           P  F++ +R L + L +    T H  RHS AT L+  G D+R +Q +LGH  ++TT+IYT
Sbjct: 231 PQAFRKRLRTLSKSLRIEPHLTPHRFRHSAATLLIEEGVDIRLVQRLLGHASIATTEIYT 290

Query: 300 NVNSKN 305
            V+  +
Sbjct: 291 KVSDNS 296


>gi|37677230|ref|NP_937626.1| putative integrase [Vibrio vulnificus YJ016]
 gi|37201775|dbj|BAC97596.1| putative integrase [Vibrio vulnificus YJ016]
          Length = 296

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 101/205 (49%), Gaps = 16/205 (7%)

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           L++  K  +  +   + +    K   LP  ++ +Q   +++     T+ E ++       
Sbjct: 79  LQFFYKHTLNKQWEWIGIIKPPKVKRLPNIISPEQVAQIIN-----TTREPRY------R 127

Query: 159 ILYL-LYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDL 216
           +L+L LY  GLRI+EAL+LT  +I      + I+ GKG K R+VPL      A+  Y+  
Sbjct: 128 VLFLTLYTMGLRINEALNLTISDIDSHNMQVHIRYGKGGKDRLVPLPHRTLHALRRYW-- 185

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
           C    +  +  P          N    Q+ ++Q+    G+    T H+LRH FATHLL  
Sbjct: 186 CTHR-HPKLLFPSKGKCCDVAFNDQGAQKALKQVVHECGIHKRITPHSLRHCFATHLLEQ 244

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNV 301
           G DLRS+Q +LGH  L+TT  YT +
Sbjct: 245 GLDLRSLQILLGHASLNTTARYTQL 269


>gi|254785433|ref|YP_003072862.1| integron integrase [Teredinibacter turnerae T7901]
 gi|237684485|gb|ACR11749.1| integron integrase [Teredinibacter turnerae T7901]
          Length = 322

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 133/297 (44%), Gaps = 77/297 (25%)

Query: 71  IRAFI---SKRRTQKIGDRSLKRSLSGIKSFLKYL---KKRKITTESNILNMRNLKKSNS 124
           IR FI   +KR   ++GDR        ++ FL YL   +     T++  LN  +    + 
Sbjct: 31  IRRFIVYSNKRHPAEMGDRE-------VELFLSYLVLERNVAAQTQALALNALSFLYRDI 83

Query: 125 LPRALNEKQALTLVDN-------VLLHTSHETKWIDARNSAILYL----LYGCGLRISEA 173
           + R L+  Q L  V +       V+L T  E + +  R S + +L    LYG GLR+ E+
Sbjct: 84  VNRPLS--QTLRFVHSHAPRKLPVVL-TPDEVRRLLERISPVYFLPAALLYGSGLRLMES 140

Query: 174 LSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS------VRKAILEYYDLCPFDLNLNIQ 226
           + L   +I  +   +RI  GKG K R V + P       V+ +++E Y      L L+I 
Sbjct: 141 VRLRVHDIDFEYCCIRIWNGKGGKHRTVTVAPELLAPLRVQTSVVERY------LALDIN 194

Query: 227 LPLFRGI------RGK-------------------PLNPGV------------FQRYIRQ 249
            P + G+      R K                    ++P               Q+ +R+
Sbjct: 195 NPKYGGVWLPSALRRKYTSASKELEWHYLFPSSRLSIDPETGHLASHHICETGLQKAVRK 254

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
                 +  + +AHTLRHSFATHLL +G D+R++Q  LGH  L TTQIYT+V    G
Sbjct: 255 AAGVAAISKTVSAHTLRHSFATHLLQSGTDIRTVQEQLGHADLRTTQIYTHVLQMGG 311


>gi|121595668|ref|YP_987564.1| integron integrase [Acidovorax sp. JS42]
 gi|120607748|gb|ABM43488.1| integron integrase [Acidovorax sp. JS42]
          Length = 332

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 142/310 (45%), Gaps = 60/310 (19%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLS 93
           T Q+Y    R+F++F      +K   +  R++   E+ AF++    ++ +   +  ++ +
Sbjct: 35  TEQAYVDWARRFILF-----HDK---RHPREMGAPEVTAFLTHLAVERNVSASTQNQAKA 86

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            I    K + +  +     I++ R   K+  LP  L +++    V  +L+H    T+W+ 
Sbjct: 87  AILFLYKEVLQHDLPWLDEIVSAR---KARRLPVVLTQRE----VRELLMHLQ-GTQWL- 137

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKG--DKIRIVP--LLPSVRK 208
                +  LLYG G+RI EAL L  +++  ++  L + +GKG  D++ ++P  L+  +R+
Sbjct: 138 -----VASLLYGTGMRILEALRLRVKDVEFERRELIVREGKGNKDRVTVLPENLITPLRE 192

Query: 209 AILEYYDLCPFDLNLNI----------------------QLPLFRGIRGKPLNPGV---- 242
            +     L   DL+  +                      Q      +R      GV    
Sbjct: 193 QMERARALHRKDLDAGLGAVWLPDALAVKYANAATAWGWQYVFPSAVRSVDPRSGVQRRH 252

Query: 243 ------FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
                  Q+ +    R  G+    T H LRHSFATH+L  G D+R++Q +LGH  +STT 
Sbjct: 253 HLLEQSVQKAVALAARRAGIDKPCTPHVLRHSFATHMLQAGYDIRTVQELLGHKDVSTTM 312

Query: 297 IYTNVNSKNG 306
           IYT+V +K G
Sbjct: 313 IYTHVLNKGG 322


>gi|323344112|ref|ZP_08084338.1| tyrosine recombinase [Prevotella oralis ATCC 33269]
 gi|323094841|gb|EFZ37416.1| tyrosine recombinase [Prevotella oralis ATCC 33269]
          Length = 345

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 140/296 (47%), Gaps = 32/296 (10%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEK------ITIQTIRQLSYTEIRAFISKRRTQ 81
           ERG+S  T++SY      F    AF+ + K      + ++ + + S  +   ++  ++  
Sbjct: 25  ERGVSSHTIRSYSA---TFQSLYAFFKDNKGIRANKLFVKDLSRRSINDYLNWLEMKKGN 81

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKR---KITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           K+  R+ +  L+ +K+F  Y + +    I     IL++++ K        L ++   TL+
Sbjct: 82  KVPARNSR--LASVKAFCHYAQYKDFKNIARWQEILSIKSKKSDMPCISFLTQEGMKTLL 139

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKI 197
             V   T         R+ AIL  LY  G R +E +S +  N+ +     + + GKG K 
Sbjct: 140 SEVPTDTIQ-----GRRHLAILAFLYDTGARANELISFSAHNLNLTKPYHVVLSGKGRKK 194

Query: 198 RIVPL---LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQRYIRQL 250
           RIVP+   L  + KA ++  ++ P +++   + PLF  I G+ L       +   Y  ++
Sbjct: 195 RIVPIHEKLVLILKAYMKDTNIEPDNIS---KQPLFVNIHGRRLTSAGLTHIIMMYADKV 251

Query: 251 RRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R      +P   + H+ RHS ATHLL  G ++  I+  LGH  + TT+ Y  ++S+
Sbjct: 252 REKHPALMPERLSPHSFRHSKATHLLQAGMNIIYIRDFLGHSSVKTTETYVRMDSE 307


>gi|294499284|ref|YP_003562984.1| phage integrase family protein [Bacillus megaterium QM B1551]
 gi|294349221|gb|ADE69550.1| phage integrase family protein [Bacillus megaterium QM B1551]
          Length = 360

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 143/307 (46%), Gaps = 52/307 (16%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           I++ LS  T++SY  D +     L+F+ E +IT+++I    + E++ F  +   Q   +R
Sbjct: 52  IKKSLSPHTIRSYNQDMK---TILSFFYEREITLKSI---GFMEVKLFNEEMMNQ-YANR 104

Query: 87  SLKRSLSGIKSFLKY--------------LKKRKITTESNILNMRNLKKSNSLP-RALNE 131
           +  R L   +  L++              ++K  I+      +  + +K N    R L +
Sbjct: 105 TAARKLEFFRRMLEFGHATHFYPSLYTTWIEKPSISKG----HYSDKEKQNRTEYRELTD 160

Query: 132 KQALTLV---DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-- 186
           ++A  +V   ++V+    HE K   ARN  +  LLY  G+R SE LSL   +  +D+   
Sbjct: 161 REAQVIVNALESVVRIRQHE-KEFKARNRLMGMLLYMSGMRSSELLSLNWGSFREDRRGN 219

Query: 187 -TLRIQGKGDKIRIVPLLPSV-------RKAILEYYDLCPFDLNLNIQLPLFRGIR---- 234
             + + GKG K R +P+   V       R+A+ E  +L PFD +     PLF  I+    
Sbjct: 220 LVVDVIGKGKKERTIPVFDDVKETLFTYRQALNESTELSPFDTD-----PLFYSIKEYYR 274

Query: 235 ---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
               K L+     R I+     +    S + H  RH+F T+ L+N   L  ++ ++GH  
Sbjct: 275 TGEKKRLSYTTLYRTIKSAVYKVKGNASISPHWFRHTFITNSLANDVPLAVVKQVVGHSS 334

Query: 292 LSTTQIY 298
           ++TT +Y
Sbjct: 335 IATTNVY 341


>gi|259909796|ref|YP_002650152.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224965418|emb|CAX56950.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 351

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 145/322 (45%), Gaps = 31/322 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI--RAFIS 76
           ++WL +L +  G S  T+Q Y    R    FLA+     IT      L+  E   R    
Sbjct: 26  ESWLAHLVVA-GRSPRTVQGYRERVR---AFLAWCEPRGITYAPQVSLAVLEAYQRWLQG 81

Query: 77  KRRT--QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEKQ 133
            RR   +++   S    L+ I+   ++L +R +   +    +   K+   LP +  +E +
Sbjct: 82  YRRADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFSEAE 141

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-G 192
              ++ ++   T         RN AIL LL+  G+R +E  +L   ++   +  + ++ G
Sbjct: 142 TRRVLQSLDAGTP-----PGLRNRAILELLWSTGIRRTELANLLLSDVDAVRGVVNVRRG 196

Query: 193 KGDKIRIVPLLPSVRKAILEYY-DLCP-----FDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           KG + R+VP+  +    +  Y  D+ P     FD        LF   +G  L  G     
Sbjct: 197 KGGRDRVVPVGNAALMWLARYLKDVRPRLAQRFDSGH-----LFISHKGTGLAHGTLTAM 251

Query: 247 I-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             R +R    L  +   H  RH+ AT +L NG D R IQ+ILGH +L TTQIYT V   +
Sbjct: 252 AGRAIRSGAHLKKAGACHIFRHTMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGH 311

Query: 306 GGDWMMEIYDQTHPSITQKDKK 327
               + +++  THP+  ++ +K
Sbjct: 312 ----LQKVHAHTHPAEKRRTEK 329


>gi|116255003|ref|YP_770838.1| putative integrase/recombinase [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115259651|emb|CAK11632.1| putative integrase/recombinase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 288

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 77/150 (51%), Gaps = 8/150 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEY 213
           R    L   Y  GLR SEA+ L  ++I  ++  +R++ GKG K R V L   +   +  Y
Sbjct: 123 RTRTALTTAYAAGLRASEAVHLKVRDIDGERGIIRVEHGKGGKDRNVMLSAQLLAILRVY 182

Query: 214 YDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           + L         ++ LF G    KP++  V     R      G+    T HTLRHSFATH
Sbjct: 183 WRLA------RPEVWLFPGRDETKPIDVQVLYSACRSACTAAGIDKRVTVHTLRHSFATH 236

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           LL +G D+R IQ +LGH  LSTT  YT V+
Sbjct: 237 LLESGTDIRIIQVLLGHNNLSTTARYTKVS 266


>gi|313903435|ref|ZP_07836826.1| integrase family protein [Thermaerobacter subterraneus DSM 13965]
 gi|313466256|gb|EFR61779.1| integrase family protein [Thermaerobacter subterraneus DSM 13965]
          Length = 226

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 90/178 (50%), Gaps = 10/178 (5%)

Query: 120 KKSNSLPRALNEKQALTLVDNVL-------LHTSHETKWIDARNSAILYLLYGCGLRISE 172
           ++   LP  L E +A  L+  VL          +H  + +  R+ A++  L   GLRISE
Sbjct: 22  ERHKRLPVYLAETEAERLLRTVLSDQGLTPRQKAHHAR-LKERDHALVTTLLCQGLRISE 80

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFR 231
           A+ L   ++  D+ TLR+ GKGDK R++PL    ++A+L Y    P        Q P++ 
Sbjct: 81  AVGLRYGDVDFDEDTLRVIGKGDKERLLPLHRRTKEALLRYLATWPGRKKPKAPQDPVWW 140

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
            + G+PL     Q  +++     GL    +AH LRH+F T L   G DL  I+ +LGH
Sbjct: 141 TLTGQPLTKNAAQVAVKRHLVRAGL-WRASAHKLRHTFGTRLAEAGVDLLVIKDLLGH 197


>gi|224369730|ref|YP_002603894.1| phage-specific recombinase/integrase XerD [Desulfobacterium
           autotrophicum HRM2]
 gi|223692447|gb|ACN15730.1| phage-specific recombinase/integrase XerD [Desulfobacterium
           autotrophicum HRM2]
          Length = 337

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 134/296 (45%), Gaps = 33/296 (11%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTE------EKITIQTIRQLSYTEIRAFISKRRTQ 81
           ++  SK T+ SY  DT  F + L F  E      EK+ +  +  +  T+   ++ + R  
Sbjct: 21  QKNASKNTIASYR-DT--FKLLLRFCLEQKDIPVEKLNMSMLSHVIITDFLEWLEEERKC 77

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-----KKSN--SLPRALNEKQA 134
            I  R+  + L+ I SF +Y +  +    S IL+ + +     KK+   S+P    E   
Sbjct: 78  CIATRN--QRLAAIHSFFRYAQYEE---PSGILHFQKIIALPIKKAPKPSVPHLTPETMK 132

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQGK 193
           L      LL    +      R+  +L +LY  G R+ E + L  +N I+D+ + L + GK
Sbjct: 133 L------LLSQPDKMTAKGRRDITLLSVLYDSGCRVQELIDLKIRNVILDNPAVLILTGK 186

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF-RGIRGKPLNPGV---FQRYIRQ 249
           G+KIR VPL+ +    +  Y      D +     PLF    R K    G+     +Y+  
Sbjct: 187 GNKIRRVPLMRNTLVLLQNYLQEHSLDKDWKRDYPLFINKQRNKLTKEGIAYIISQYVGP 246

Query: 250 LRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            +R    +P   T H  RHS A HLL    +L  I+  LGH  + TT+IY   +S+
Sbjct: 247 AKRMSASMPKKVTPHMFRHSKAVHLLQADVNLIYIRDFLGHQDVRTTEIYAKCDSE 302


>gi|147668730|ref|YP_001213548.1| phage integrase family protein [Dehalococcoides sp. BAV1]
 gi|146269678|gb|ABQ16670.1| phage integrase family protein [Dehalococcoides sp. BAV1]
          Length = 319

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 129/274 (47%), Gaps = 26/274 (9%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           LS  T++ Y      FL +      + + I T+ ++    +R ++ K + ++    S+  
Sbjct: 44  LSPHTIRYYTYALNSFLGYC-----QTLGINTVEEIEANHVRLYLVKLQ-ERNNPTSVLD 97

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
               +K F  +L +  + ++S +  ++  +    + R    +Q    +++ LL T  ++ 
Sbjct: 98  YYKAVKRFFNWLIEEGVLSKSPLATIKPPRTEQKIIRPFTRQQ----IED-LLATCGDSP 152

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
            I  RN A++  +   GLR+SE  ++  +++  D+ T+ + GKG K R+V +    ++ I
Sbjct: 153 -IGLRNKAMILTMLDTGLRVSEMSAIQLKDVDFDKETIIVMGKGAKQRVVRIGHKAQETI 211

Query: 211 LEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTL 265
           L Y     D CP          L+    G  L+    +  +R+L +  GL  +  + HT 
Sbjct: 212 LRYLLTRQDECP---------ALWMSTTGSGLSTEGIKVVVRELGKRAGLTGVRCSPHTF 262

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           RH+FAT  L NG     +QS+LGH  L  T+ YT
Sbjct: 263 RHTFATQALINGAGEFEVQSLLGHSTLVMTKRYT 296


>gi|255009008|ref|ZP_05281134.1| putative tyrosine recombinase [Bacteroides fragilis 3_1_12]
 gi|313146748|ref|ZP_07808941.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           3_1_12]
 gi|313135515|gb|EFR52875.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           3_1_12]
          Length = 379

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 18/205 (8%)

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           +K+  ++ +  E +   +   K+  +LP  L++++         L  + E    D R   
Sbjct: 171 IKFYYEKVLGNERHCYKVNRAKREKTLPDVLSKEEV-----KDFLTVAKE----DLRFYC 221

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL-LPSVRKAILEYYDL 216
           +  LLY  GLRISE L+L P +I   +S + + QGKG K R   L  P + K  LE Y +
Sbjct: 222 MYSLLYSAGLRISELLNLKPDDINISRSLIHVRQGKGKKDRYTLLSKPFINK--LEEYRI 279

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
                    +  LF    G   +  +  + ++++    G+      H  RHSFATHL+  
Sbjct: 280 A-----YQPEKWLFEREAGVQFSESIVSKKLKEIAHEAGITKRVYPHLFRHSFATHLIEQ 334

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNV 301
           G DL+ I+ +LGH  + TT++Y ++
Sbjct: 335 GTDLKIIKELLGHENIKTTEMYVHI 359


>gi|116254596|ref|YP_770432.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|116254608|ref|YP_770444.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|116255785|ref|YP_771618.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115259244|emb|CAK10376.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115259256|emb|CAK10389.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115260433|emb|CAK03537.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 286

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 77/150 (51%), Gaps = 8/150 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEY 213
           R    L   Y  GLR SEA+ L  ++I  ++  +R++ GKG K R V L   +   +  Y
Sbjct: 121 RTRTALTTAYAAGLRASEAVHLKVRDIDGERGIIRVEHGKGGKDRNVMLSAQLLAILRVY 180

Query: 214 YDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           + L         ++ LF G    KP++  V     R      G+    T HTLRHSFATH
Sbjct: 181 WRLA------RPEVWLFPGRDETKPIDVQVLYSACRSACTAAGIDKRVTVHTLRHSFATH 234

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           LL +G D+R IQ +LGH  LSTT  YT V+
Sbjct: 235 LLESGTDIRIIQVLLGHNNLSTTARYTKVS 264


>gi|38257059|ref|NP_940713.1| Orf28 [Pseudomonas syringae pv. syringae]
 gi|37723836|gb|AAR02162.1| Orf28 [Pseudomonas syringae pv. syringae]
          Length = 319

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 129/295 (43%), Gaps = 41/295 (13%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W  NL+  R     T ++Y+ D   F  F+   + +       RQ++ + + A+ +    
Sbjct: 32  WFANLDNPR-----TRRAYQNDLTDFSSFIGLASADDF-----RQVTRSHVLAWRADLEQ 81

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN---MRNLKKSNSLPRALNEKQALTL 137
           + +   +++R L+ + S   +L +       N ++      ++ +     AL + QA  L
Sbjct: 82  RGLAGATIRRKLAALASLFDHLLENNAVAGGNPVHGVKRPRIESNEGKTPALGDHQAKQL 141

Query: 138 VDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194
           +D      + +T+ +   R+ AIL +L   GLR  EA  L   ++ + +    LR+ GKG
Sbjct: 142 LD------APDTETLKGLRDRAILAVLLYHGLRREEAAQLKTGDLQERRGIKHLRVHGKG 195

Query: 195 DKIRIVPLLPSVRKAILEYY------DLCPFDLNLNIQLPLFRGIRGKPLNPGV----FQ 244
            KIR +PL P   + I  Y       D  P         PLFR +RG     G+      
Sbjct: 196 SKIRFLPLHPVAAERIYAYLEQDVERDAAPG--------PLFRSLRGTTTGAGISANGIY 247

Query: 245 RYIRQLRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             +    +  G+ +     H LR + AT+ L +  D+  +Q  LGH  +STT++Y
Sbjct: 248 TVVEACAKKAGIVVEHLGVHGLRATAATNALEHDADIAKVQMWLGHANISTTRLY 302


>gi|295089983|emb|CBK76090.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 342

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 159/360 (44%), Gaps = 57/360 (15%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M  N LPE   F LL E Q + + +    GLS  T++SY+   R  L+F   Y  +K   
Sbjct: 1   MRKNKLPE---FTLLLE-QFFTEYMPFSSGLSPNTIRSYKHSFR--LLFQYIYQVQKKNA 54

Query: 61  QTI--RQLSYTEIRAF---ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI---TTESN 112
             I  R L Y  I  F   I   R      R+L+  LS + SF  Y + R     T  +N
Sbjct: 55  DEILFRDLDYETIDGFLKWIETERGCSASTRNLR--LSALASFSFYAQNRNFEAATVFAN 112

Query: 113 ILNMRNLKKSNSLPR---ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
            +    +KK    PR   +L+E        +VLLH  +  K +  R+  +L L+Y  G R
Sbjct: 113 AVRRTPVKKEAIQPRITFSLDEV-------SVLLHLPNPQKRLGFRDQVLLNLMYASGAR 165

Query: 170 ISEALSLTPQNIMDDQS--TLRIQGKGDKI-RIVPLLPS-----------VRKAILEYYD 215
             E   L  ++   +++   L I GKG+K  RIV   PS            R   LE Y 
Sbjct: 166 AQEICDLKVRDFFVEKNLYKLTITGKGNKTRRIVIAKPSGILLKRYLEETGRAGQLETYI 225

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR-YLGLPLST--TAHTLRHSFATH 272
              F    + Q+ +            ++++YI   R  + G+ L    T HT+RH+ ATH
Sbjct: 226 ---FSSQTHPQMTI-------SCVEEIYKKYIALARAGHPGMFLEKRYTPHTMRHTTATH 275

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVN----SKNGGDWMMEIYDQTHPSITQKDKKN 328
           +L  G  + +I++ LGH  +STT+ Y  ++    +++  DW  + +        ++ K+N
Sbjct: 276 MLEAGVPIVAIKNFLGHSSISTTERYAELSQGTVNRHIRDWNEKWFSHQKEEPVERKKEN 335


>gi|291522920|emb|CBK81213.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 280

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 127/292 (43%), Gaps = 28/292 (9%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +E  N +++   +R L   T+ +Y      FL           T + I  L+  ++  
Sbjct: 1   MYEEIFNQIRSAANKRNLKDSTIHAYCTSVAHFL---------NHTAKDIDALTTDDVDT 51

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+++++   I   +     SGI+ F K + K     +    ++  +K+   LP  L + +
Sbjct: 52  FLTEKKLSGISPETYNHYHSGIRFFYKKVLKMNWDDD----DIPRMKRDRKLPAVLTKAE 107

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-G 192
              ++D             + ++ A++  +Y  GLR+SE   L   +I     T+ I+ G
Sbjct: 108 ISAILDAT----------PNLKHKAMIATMYSGGLRVSEVTHLHYDDISRTNKTIHIRDG 157

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K    R   L     + + EY+  C       I  P      G  L      ++ R+   
Sbjct: 158 KSRSDRYTLLADRTLEILTEYWFQCG--RPRGILFP--SSWTGDYLTKDSVIQFFRESAE 213

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             G+    + H LRHSFA+HL  +G D++ IQ++LGH    +T+IY +V++K
Sbjct: 214 RAGIQKHVSTHCLRHSFASHLFESGCDIKYIQALLGHRDPKSTEIYLHVSNK 265


>gi|153822305|ref|ZP_01974972.1| site-specific tyrosine recombinase [Vibrio cholerae B33]
 gi|229508697|ref|ZP_04398190.1| integron integrase [Vibrio cholerae B33]
 gi|229608748|ref|YP_002879396.1| integron integrase [Vibrio cholerae MJ-1236]
 gi|255743891|ref|ZP_05417847.1| integron integrase [Vibrio cholera CIRS 101]
 gi|126520201|gb|EAZ77424.1| site-specific tyrosine recombinase [Vibrio cholerae B33]
 gi|229354221|gb|EEO19151.1| integron integrase [Vibrio cholerae B33]
 gi|229371403|gb|ACQ61826.1| integron integrase [Vibrio cholerae MJ-1236]
 gi|255738522|gb|EET93911.1| integron integrase [Vibrio cholera CIRS 101]
          Length = 319

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 120/248 (48%), Gaps = 51/248 (20%)

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           +L  I    K++ +R++T   + +  R  K+   +P  L+  +A+++++           
Sbjct: 72  ALCAIVFMYKHILQRELTLLPDTIKARAPKR---VPSVLSHNEAMSIINQ---------- 118

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKG--DKIRIVP--LLPS 205
            +      +  LLYGCGLR +E L L  ++I  + ++    +GKG  D+++++P  L+  
Sbjct: 119 -LSGSYKLMFSLLYGCGLRKAELLMLRVKDIDFESRNVYVFRGKGGKDRVKMLPEKLVEP 177

Query: 206 VRKAI-----LEYYDLC----------------PFDL-NLNIQLPLFRGIRGK-PLNPGV 242
           ++  I     L   DLC                P+ + +   Q      +R K P++  V
Sbjct: 178 LKLHIEKVRDLHEKDLCEGEGKTSLPSGLARKYPYAISDFKWQFIFPSSVRCKHPVDGYV 237

Query: 243 FQRYI------RQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            + ++      ++LR  +   G+    TAH  RHSFAT LL  G D+R++Q +LGH  L 
Sbjct: 238 CRHHLHWTSLTKKLRSAVIRSGVQKHVTAHIFRHSFATQLLKAGTDIRTVQELLGHSDLK 297

Query: 294 TTQIYTNV 301
           TTQIYT+V
Sbjct: 298 TTQIYTHV 305


>gi|163751332|ref|ZP_02158558.1| site-specific recombinase, phage integrase family protein
           [Shewanella benthica KT99]
 gi|161328741|gb|EDP99888.1| site-specific recombinase, phage integrase family protein
           [Shewanella benthica KT99]
          Length = 312

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 127/287 (44%), Gaps = 69/287 (24%)

Query: 71  IRAFI---SKRRTQKIGDRSLKRSLSGIK--------------SFLKYLKKRKITTESNI 113
           I+ FI    K+  Q +G++ ++R L+ +                 + +L +  I  + + 
Sbjct: 25  IKGFIVFNDKKHPQDMGNQEIERFLNHLAVNRQVSGATQNQALCAIIFLYRHIIQRDISG 84

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
           L     K+  S+P  L  ++A  ++D            ++ +   I  LLYG GLRI+EA
Sbjct: 85  LRYSFTKREKSMPTVLTHEEARAIIDR-----------LNGKYWLIASLLYGSGLRINEA 133

Query: 174 LSLTPQNI-MDDQSTLRIQGKGDKIRIVPL----------------------------LP 204
           L L  ++I ++D +    +GKG K R   L                            L 
Sbjct: 134 LQLRIKDINLNDNTLFIFRGKGKKDRYTLLPRSLKPEVELQMTHVKERHSQDLSEGFGLT 193

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYI------RQLRRYL--- 254
           S+  A+L  Y     D++     P   R +   P +  + + +I      +QLR+ +   
Sbjct: 194 SLPPALLRKYGDAAKDISWQYFFPSTTRCVH--PYDGYICRHHIHETSFRKQLRKAVIAT 251

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            +P    AHT RHSFAT LL +G D+R++Q +LGH  + TT++YT+V
Sbjct: 252 QIPKQVKAHTFRHSFATQLLQHGSDIRTVQELLGHTDVKTTELYTHV 298


>gi|148264909|ref|YP_001231615.1| integron integrase [Geobacter uraniireducens Rf4]
 gi|146398409|gb|ABQ27042.1| integron integrase [Geobacter uraniireducens Rf4]
          Length = 452

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 134/310 (43%), Gaps = 59/310 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-LSYTEIRAFISKRRTQKIGDRS 87
           R  S+ TL++Y   +RQF  FL     ++++   +++ L+Y  ++  ++   TQ      
Sbjct: 150 RHYSRKTLKTYALWSRQFQRFLKNKPPQELSTADVKEYLTYLAVKCHVAAS-TQN----- 203

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++ + +    ++  +R       + ++   KKS  +P  L+  +    +D +L   SH
Sbjct: 204 --QAFNSLLFLFRHALQRDF---GELRDVPRAKKSLYIPAVLSRLE----IDAILEQLSH 254

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV- 206
                    + ++ +L+GCGLR+ E L L  ++   D + L + GKG K R VPL  S+ 
Sbjct: 255 PY-------NLVVKMLFGCGLRLFEGLQLRVRDFNFDVNILTVHGKGKKDRTVPLPESIL 307

Query: 207 --------RKAILEYYDLCP------FDLNLNIQLP----------LF----------RG 232
                   R  +L   DL         D  +  + P           F           G
Sbjct: 308 TELKAQIKRVGVLHDRDLVAGYDGVFLDDAVERKYPNAAKEFIHQWFFPQQSLTMVEETG 367

Query: 233 IRGK-PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
            R +  L+    Q  +    R   +P   T+H  RHSFATHLL    D+R IQ +LGH  
Sbjct: 368 ERRRWHLHESELQEALYHAVRRAKIPKRVTSHIFRHSFATHLLQANYDIRVIQKLLGHAS 427

Query: 292 LSTTQIYTNV 301
           L TT IYT+ 
Sbjct: 428 LKTTMIYTHC 437


>gi|557887|gb|AAA50502.1| integrase [Bergeyella zoohelcum]
 gi|1098132|prf||2115270D integrase
          Length = 259

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 98/200 (49%), Gaps = 27/200 (13%)

Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
           + L++  +K+   LP  L++++   ++    L           ++  ++ +LYGCGLR  
Sbjct: 55  DFLSLPEIKREKKLPVVLSKQEVWQMLSGCKL----------LKHKILIGILYGCGLRCM 104

Query: 172 EALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPL 229
           E  +L   ++  D+  L++ QGKG K R +PL   + + + +Y +   P D        L
Sbjct: 105 EVRNLRLCDLDFDRKQLKVVQGKGKKDRYLPLSEHLIRGLKKYIEAEKPEDY-------L 157

Query: 230 FRGIRGKPLNPGVFQRY--------IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
           F   RG         RY        ++Q  +   +    + HTLRHSFATHLL +G D+ 
Sbjct: 158 FGEPRGNRAGGEFDSRYSQRGVQWAVKQASKTANILKEVSVHTLRHSFATHLLEDGMDIL 217

Query: 282 SIQSILGHFRLSTTQIYTNV 301
           SI+++LGH  + TT IY  +
Sbjct: 218 SIKNLLGHESIDTTLIYLQI 237


>gi|167040254|ref|YP_001663239.1| site-specific tyrosine recombinase XerC [Thermoanaerobacter sp.
           X514]
 gi|300914338|ref|ZP_07131654.1| integrase family protein [Thermoanaerobacter sp. X561]
 gi|307724426|ref|YP_003904177.1| integrase family protein [Thermoanaerobacter sp. X513]
 gi|166854494|gb|ABY92903.1| phage integrase family protein [Thermoanaerobacter sp. X514]
 gi|300889273|gb|EFK84419.1| integrase family protein [Thermoanaerobacter sp. X561]
 gi|307581487|gb|ADN54886.1| integrase family protein [Thermoanaerobacter sp. X513]
          Length = 330

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 148/308 (48%), Gaps = 34/308 (11%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL----------AFYTE---EKITI 60
           LL+E  N+   +   +  S  T+++Y  D   FL FL            + E     + +
Sbjct: 20  LLEEFLNYFSTV---KARSYNTVKAYAYDLVLFLRFLKQRRRKVSPDVEFDEIDISDVDV 76

Query: 61  QTIRQLSYTEIRA---FISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNM 116
             I  +   ++ A   F++  R+     R+  R ++ ++SF  YL KK K+ +++    +
Sbjct: 77  DLIESVDLNDLYAYLNFVANERSNTPHARA--RKVASLRSFYNYLYKKAKVLSKNPTQEL 134

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
            + K S   P  L   ++  L++++             R+ AI+ L   CGLR+SE +++
Sbjct: 135 ESPKLSVRQPIYLTLDESKKLLNSI-------DGPFKERDYAIITLFLNCGLRVSELVNI 187

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
              +I DD+  L + GKG+K R V L  +   AI  Y  + P +  +  +  LF   R K
Sbjct: 188 NLDDIKDDK--LTVIGKGNKQRTVYLNDACINAINTYLKVRPKE-GVKDKKALFLSKRLK 244

Query: 237 PLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLST 294
            ++    Q  +++  +   L     +AH LRH+ AT +   G  D+R++Q +LGH  +ST
Sbjct: 245 RISVKTVQYTVKKHLKNANLEGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVST 304

Query: 295 TQIYTNVN 302
           TQIYT+V+
Sbjct: 305 TQIYTHVD 312


>gi|295704637|ref|YP_003597712.1| phage integrase family protein [Bacillus megaterium DSM 319]
 gi|294802296|gb|ADF39362.1| phage integrase family protein [Bacillus megaterium DSM 319]
          Length = 360

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 142/307 (46%), Gaps = 52/307 (16%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           I++ LS  T++SY  D +     L+F+ E +IT+++I    + E++ F  +   Q   +R
Sbjct: 52  IKKSLSPHTIRSYNQDMK---TILSFFYEREITLKSI---GFMEVKLFNEEMMNQ-YANR 104

Query: 87  SLKRSLSGIKSFLKY--------------LKKRKITTESNILNMRNLKKSNSLP-RALNE 131
           +  R L   +  L++              ++K  I       +  + +K N    R L +
Sbjct: 105 TAARKLEFFRRMLEFGHATHFYPSLYTTWIEKPSIAKG----HYSDKEKQNRTEYRELTD 160

Query: 132 KQALTLV---DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-- 186
           ++A  +V   ++V+    HE K   ARN  +  LLY  G+R SE LSL   +  +D+   
Sbjct: 161 REAQVIVNALESVVRIRQHE-KEFKARNRLMGMLLYMSGMRSSELLSLNWGSFREDRRGN 219

Query: 187 -TLRIQGKGDKIRIVPLLPSV-------RKAILEYYDLCPFDLNLNIQLPLFRGIR---- 234
             + + GKG K R +P+   V       R+A+ E  +L PFD +     PLF  I+    
Sbjct: 220 LVVDVIGKGKKERTIPVFDDVKETLFTYRQALNESTELSPFDTD-----PLFYSIKEYYR 274

Query: 235 ---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
               K L+     R I+     +    S + H  RH+F T+ L+N   L  ++ ++GH  
Sbjct: 275 TGAKKRLSYTTLYRTIKSAVYKVKGNASISPHWFRHTFITNSLANDVPLAVVKQVVGHSS 334

Query: 292 LSTTQIY 298
           ++TT +Y
Sbjct: 335 IATTNVY 341


>gi|310764968|gb|ADP09918.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 351

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 143/324 (44%), Gaps = 35/324 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF---- 74
           ++WL +L    G S  T+Q Y    R FL +      E   I+   Q+S   + ++    
Sbjct: 26  ESWLSHLAAA-GRSPRTVQGYGERVRAFLAWC-----EPRGIRYAPQVSLAVLESYQRWL 79

Query: 75  --ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNE 131
               K   +++   S    L+ I+   ++L +R +   +    +   K+   LP +  +E
Sbjct: 80  QGYRKADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFSE 139

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            +   ++ ++   T         RN AIL LL+  G+R SE   L   ++   +  + ++
Sbjct: 140 DETRRVLQSLDAGTP-----PGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVR 194

Query: 192 -GKGDKIRIVPLLPSVRKAILEYY-DLCP-----FDLNLNIQLPLFRGIRGKPLNPGVFQ 244
            GKG K R+VP+  +    +  Y  D+ P     FD        LF   +G  L  G   
Sbjct: 195 RGKGGKDRVVPVGHAALIWLGRYLQDVRPRLAQRFDSGH-----LFISHKGTGLAHGTLT 249

Query: 245 RYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
               R +R    L  +   H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V  
Sbjct: 250 AMAGRAIRSGAHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAI 309

Query: 304 KNGGDWMMEIYDQTHPSITQKDKK 327
            +    + +++  THP+   + +K
Sbjct: 310 GH----LQKVHAHTHPAEKGRTEK 329


>gi|167037592|ref|YP_001665170.1| site-specific tyrosine recombinase XerC [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256750822|ref|ZP_05491707.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|320116007|ref|YP_004186166.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166856426|gb|ABY94834.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|256750405|gb|EEU63424.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|319929098|gb|ADV79783.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 330

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 149/308 (48%), Gaps = 34/308 (11%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL----------AFYTEEKIT---I 60
           LL+E  N+   +   +  S  T+++Y  D   FL FL            + E  I+   +
Sbjct: 20  LLEEFLNYFSTV---KARSYNTVKAYAYDLVLFLRFLKQRRGKVSPDVEFDEIDISDVDV 76

Query: 61  QTIRQLSYTEIRA---FISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNM 116
             I  +   ++ A   F++  R+     R+  R ++ ++SF  YL KK K+ +++    +
Sbjct: 77  DLIESVDLNDLYAYLNFVANERSNTPHARA--RKVASLRSFYNYLYKKAKVLSKNPTQEL 134

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
            + K S   P  L   ++  L++++             R+ AI+ L   CGLR+SE +++
Sbjct: 135 ESPKLSVRQPIYLTLDESKKLLNSI-------DGPFKERDYAIITLFLNCGLRVSELVNI 187

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
              +I DD+  L + GKG+K R V L  +   AI  Y  + P +  +  +  LF   R K
Sbjct: 188 NLDDIKDDK--LTVIGKGNKQRTVYLNDACINAINTYLKVRPKE-GVKDKKALFLSKRLK 244

Query: 237 PLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLST 294
            ++    Q  +++  +   L     +AH LRH+ AT +   G  D+R++Q +LGH  +ST
Sbjct: 245 RISVKTVQYTVKKHLKNANLEGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVST 304

Query: 295 TQIYTNVN 302
           TQIYT+V+
Sbjct: 305 TQIYTHVD 312


>gi|313637890|gb|EFS03211.1| tyrosine recombinase XerC [Listeria seeligeri FSL S4-171]
          Length = 291

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 88/172 (51%), Gaps = 11/172 (6%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGDKIRIVPLLPSVRKAI 210
           + A    I   L+  G+R+SE LS    N++D +  T+ I GKG+K RI+     +   +
Sbjct: 125 VTAYQEFIFDFLFSTGIRVSE-LSSIKINLIDLENRTILITGKGNKERIIFYNDKLEHKL 183

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + +  L    +  N +   +  I+   GKP+        I ++ +   + L    HTLRH
Sbjct: 184 IRFLKLRHQIMEFNKKYHSYLFIKLTTGKPVTNNFIYYEIVKIGKLYDINLH--PHTLRH 241

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           SFAT+LL NG D+R IQ  LGH  + TTQ YT++  KN  + +M    + HP
Sbjct: 242 SFATNLLENGCDIRYIQEFLGHSSILTTQRYTHLQLKNKTNTIM----KHHP 289


>gi|302874927|ref|YP_003843560.1| integrase family protein [Clostridium cellulovorans 743B]
 gi|307690455|ref|ZP_07632901.1| integrase family protein [Clostridium cellulovorans 743B]
 gi|302577784|gb|ADL51796.1| integrase family protein [Clostridium cellulovorans 743B]
          Length = 276

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 122/270 (45%), Gaps = 32/270 (11%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T++SY+ D  QF+ F+    EE IT + I  L Y E  A        ++  +S  R    
Sbjct: 20  TIESYKGDVIQFMNFIEKEPEE-ITKEDI--LKYKEYLAL------NEMSVKSANRKYIS 70

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + SF  +L+    T     + MR  K        L E  A    +N++   S    + D 
Sbjct: 71  VNSFFSFLQ----TELEKDVQMRIKKDKIQNQEYLEEMLAKEDFENLVQVAS---SYNDY 123

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R  AI   L+  G+RISEAL L   +I +D   + I+GKG K R V  +P   K+IL  Y
Sbjct: 124 RAVAIFNTLFYTGMRISEALQLKTTDISND--VVVIKGKGSKHRNV-FIPQKLKSILNTY 180

Query: 215 DL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSF 269
            +    C  D        LF G +G P+N       I++     G+ ++   AH  RH +
Sbjct: 181 MIYRLPCKSD-------ALFTGKKG-PINRKTVDAIIKKYAAIAGISMTKAHAHNFRHLY 232

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
              L+  G  + ++  + GH  ++TT+IYT
Sbjct: 233 CLTLIEKGLTIDTVADLAGHSNINTTRIYT 262


>gi|326794173|ref|YP_004311993.1| integrase family protein [Marinomonas mediterranea MMB-1]
 gi|326544937|gb|ADZ90157.1| integrase family protein [Marinomonas mediterranea MMB-1]
          Length = 323

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 138/313 (44%), Gaps = 53/313 (16%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +LQ  +  R LS  TL++Y  D +QF+      T       ++  +   ++  F      
Sbjct: 11  YLQFCQKNRKLSGHTLKAYRIDLKQFVECTGVKT-------SVNAIDKKDLHKFHDYLAD 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALNE---KQAL 135
            ++   S+KR L+ I++  ++L++ +    T  +  N  ++K    LPR +N+   K+ L
Sbjct: 64  SELSQSSIKRKLACIRAMFRWLEQEEEIEVTPFHKFNT-SIKLPKRLPRNVNKSDLKRML 122

Query: 136 TLVDNVLLHTSHETKWIDARNSAILY-----------------LLYGCGLRISEALSLTP 178
           T     L       K I   N+   Y                 L+   G+R+SE + +  
Sbjct: 123 TQGRRTL--DQKPLKSISDENTGFSYPTSKRDLNKLTGTLALELMLSTGMRVSELVGIQL 180

Query: 179 QNIMDDQSTLRIQGKGDKIR--------IVPLLPSVRKA--ILEYYDLCPFDLNLNIQLP 228
            +I   +  ++I GKG + R        I  L+   RKA  I+E  D   F LN      
Sbjct: 181 DDIFLTERKIKIFGKGSRERYVYLPDKEICQLIRHYRKARTIVES-DSSNFLLN------ 233

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
                RG+P +    ++ IR L       L  T H LRHS A  L+ +G D+R +Q +LG
Sbjct: 234 ----SRGQPASTQFIRKLIRLLAEQSSTQLHVTPHMLRHSAACELMESGLDIRFVQRLLG 289

Query: 289 HFRLSTTQIYTNV 301
           H  +STT+IYT+V
Sbjct: 290 HSSISTTEIYTHV 302


>gi|325474369|gb|EGC77557.1| DNA integrase [Treponema denticola F0402]
          Length = 426

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 143/320 (44%), Gaps = 59/320 (18%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N L+ +   +  SK T+++Y     +F+       E K   + ++ LS TEI AF+S+  
Sbjct: 113 NKLEEVITAKHYSKRTMEAYSYWISRFI------RENKN--KNLKTLSDTEINAFVSRLA 164

Query: 80  T-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +K    S  ++L+ +    K +    I T  NI+  +  KK   LP A+  ++    +
Sbjct: 165 VKEKAAASSQNQALAALLFLYKNILGLTIKTPENIVRAKKPKK---LP-AIMTREETAKI 220

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKI 197
            ++L    +           ++ LLYG G+R+ EAL L  Q+I   ++ + +  GKG K 
Sbjct: 221 FSLLPENDY---------GLLIRLLYGTGMRLMEALRLRIQDIDFGKNEITVHCGKGAKD 271

Query: 198 R--IVPL---------LPSVR-----------------KAILEYYDLCPFDLNLNIQLPL 229
           R  ++P+         L +VR                  A+ + Y             P 
Sbjct: 272 RKTVLPVSLKFPLQKHLENVRLIHEADCKDGFGSVPLPSALAKKYPAAGKAWAWQWVFPQ 331

Query: 230 FR-------GIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
            R       G +G+  ++P V QR + +     G+P     HT RHSFATHLL    D+R
Sbjct: 332 ARRWQNKETGEQGRHHIDPSVIQRTLHEAVLKSGIPKPIGCHTFRHSFATHLLEASYDIR 391

Query: 282 SIQSILGHFRLSTTQIYTNV 301
           +IQ +LGH  + TT +YT+V
Sbjct: 392 TIQELLGHSDVKTTMVYTHV 411


>gi|289450299|ref|YP_003475200.1| site-specific tyrosine recombinase XerC [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289184846|gb|ADC91271.1| site-specific tyrosine recombinase XerC [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 366

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 143/313 (45%), Gaps = 40/313 (12%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY----------------TEEKITIQTI 63
           ++L  L   +G S LT++ Y  D    ++F  +Y                  + IT   +
Sbjct: 47  DFLAYLSGIKGRSALTIKEYHYD---LVLFFRYYKILQKRVPHDLDFRAIPLDDITEADL 103

Query: 64  RQLSYTEIRAFI---SKRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTESNILNMRNL 119
            Q+    + +FI   +  +     +RS  R ++ ++SF KY   K ++  E+    + + 
Sbjct: 104 NQIDLKILYSFIGWLANEKKASTANRS--RKIATLRSFFKYHHTKTRLIKENPAAELESP 161

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K+    PR L  +++  L+  V    S+ ++    R+  IL L   CGLR++E   +   
Sbjct: 162 KQLKKQPRYLEVEESKQLLQTVAQANSNFSQ----RDYCILTLFLNCGLRLAELCGINLG 217

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-------NIQLPLFRG 232
           +I +D  TLR+ GKG K R V L  +   A+  Y        N          + PLF  
Sbjct: 218 DIGED--TLRVLGKGGKERTVYLNGACIAALNAYLPERKQQKNSFNSAEKKQAETPLFIS 275

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHF 290
            +G  ++    Q  +R+     GL P   T H LRH+ AT +   G  D+R +Q ILGH 
Sbjct: 276 RQGNRISHPAVQLLVRKYIILAGLDPHKYTPHKLRHTAATLMYKYGHVDIRMLQQILGHS 335

Query: 291 RLSTTQIYTNVNS 303
            ++TT+IYT++++
Sbjct: 336 SVATTEIYTHLDA 348


>gi|124010377|ref|ZP_01695023.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134]
 gi|123983544|gb|EAY24009.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134]
          Length = 295

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 133/300 (44%), Gaps = 28/300 (9%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E L+  + WL++L    G +  T   Y    R+FL FL    + +  +  +     +   
Sbjct: 13  EHLQGFEAWLRSL----GYASSTCDKYPRQLREFLYFLE--QQGRFGLAEVGASDVSAYF 66

Query: 73  AFISKRRTQKIGD-------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
            ++S RR+ K G+       RS++++L G   F +YL+   +   S  L   +L   ++ 
Sbjct: 67  DYLSGRRSVKTGELLSHSHLRSVRKTLRG---FQRYLRSLGVPVFS--LPGVSLPGLSAA 121

Query: 126 P-RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           P R L+  +   L D           W   R+ A+L L YGCGLR SE   L   ++   
Sbjct: 122 PIRVLSRVEVGLLYDGCGF-----DHW-GLRDQALLSLGYGCGLRRSEIHLLDVGDVHFK 175

Query: 185 QSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR-GIRGKPLNPGV 242
           +  +++  GKG K R VP++  V+  +  Y        +     P F    RG  L P  
Sbjct: 176 KGWVQVLSGKGRKERFVPMVGRVKDDLYAYLTEGRRFFSGRSPSPAFLLSQRGHRLGPKS 235

Query: 243 FQRYIRQLRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               + +L     L   +   H+LRHS ATHL + G  L  +   LGH  L +TQ+YT++
Sbjct: 236 LSERLEKLATKAELSGGSVGLHSLRHSIATHLHNGGMSLSKVSLFLGHSSLDSTQLYTHL 295


>gi|283479890|emb|CAY75806.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 351

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 144/322 (44%), Gaps = 31/322 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI--RAFIS 76
           ++WL +L +  G S  T+Q Y    R    FLA+     IT      L+  E   R    
Sbjct: 26  ESWLAHLVVA-GRSPRTVQGYRERVR---AFLAWCEPRGITYAPQVSLAVLEAYQRWLQG 81

Query: 77  KRRT--QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEKQ 133
            RR   +++   S    L+ I+   ++L +R +   +    +   K+   LP +  +E +
Sbjct: 82  YRRADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFSEAE 141

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-G 192
              ++ ++   T         RN AIL LL+  G+R +E  +L   ++   +  + ++ G
Sbjct: 142 TRRVLQSLDAGTP-----PGLRNRAILELLWSTGIRRTELANLLLSDVDAVRGVVNVRRG 196

Query: 193 KGDKIRIVPLLPSVRKAILEYY-DLCP-----FDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           KG + R+VP+  +    +  Y  D+ P     FD        LF   +G  L  G     
Sbjct: 197 KGGRDRVVPVGNAALMWLARYLKDVRPRLAQRFDSGH-----LFISHKGTGLAHGTLTAM 251

Query: 247 I-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             R +R    L  +   H  RH  AT +L NG D R IQ+ILGH +L TTQIYT V   +
Sbjct: 252 AGRAIRSGAHLKKAGACHIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGH 311

Query: 306 GGDWMMEIYDQTHPSITQKDKK 327
               + +++  THP+  ++ +K
Sbjct: 312 ----LQKVHAHTHPAEKRRTEK 329


>gi|297570372|ref|YP_003691716.1| integron integrase [Desulfurivibrio alkaliphilus AHT2]
 gi|296926287|gb|ADH87097.1| integron integrase [Desulfurivibrio alkaliphilus AHT2]
          Length = 465

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 101/224 (45%), Gaps = 45/224 (20%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K+   LP  L+  + + L++ +        + I A +  +  LLYG GLR+ E + L  Q
Sbjct: 240 KQPRRLPVVLSRSETVRLLEAL--------REISALHHLMASLLYGTGLRLMECVRLRVQ 291

Query: 180 NIMDDQSTLRIQ-GKGDKIRIVPLLPSV----RKAILEYYDLCPFDLNLN---IQLPLFR 231
           ++  D   + ++ GKG K R+VPL   V    R  + E   L   DL      + LP   
Sbjct: 292 DVDFDLGQIMVRDGKGQKDRVVPLPQGVQEPLRDHLAEVRRLHEEDLAQGLGEVYLPEAL 351

Query: 232 G-----------------------------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           G                             +R   ++    Q+ I++     GL      
Sbjct: 352 GRKYPNAAREWGWQFVFPSGRLSTDPRSGVVRRHHIHENGLQKSIKKATLAAGLTKRVNC 411

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           H LRHSFATHLL+ G D+R++Q +LGH  +STT IYT+V ++ G
Sbjct: 412 HALRHSFATHLLAAGYDIRTVQELLGHADVSTTMIYTHVLNRGG 455


>gi|307267401|ref|ZP_07548893.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306917586|gb|EFN47868.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 330

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 148/308 (48%), Gaps = 34/308 (11%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL----------AFYTE---EKITI 60
           LL+E  N+   +   +  S  T+++Y  D   FL FL            + E     + +
Sbjct: 20  LLEEFLNYFSTV---KARSYNTVKAYAYDLVLFLRFLKQRRGKVSPNVEFDEIDISDVDV 76

Query: 61  QTIRQLSYTEIRA---FISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNM 116
             I  +   ++ A   F++  R+     R+  R ++ ++SF  YL KK K+ +++    +
Sbjct: 77  DLIESVDLNDLYAYLNFVANERSNTPPARA--RKVASLRSFYNYLYKKAKVLSKNPTQEL 134

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
            + K S   P  L   ++  L++++             R+ AI+ L   CGLR+SE +++
Sbjct: 135 ESPKLSVRQPIYLTLDESKKLLNSI-------DGPFKERDYAIITLFLNCGLRVSELVNI 187

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
              +I DD+  L + GKG+K R V L  +   AI  Y  + P +  +  +  LF   R K
Sbjct: 188 NLDDIKDDK--LTVIGKGNKQRTVYLNDACINAINTYLKVRPKE-GVKDKKALFLSKRLK 244

Query: 237 PLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLST 294
            ++    Q  +++  +   L     +AH LRH+ AT +   G  D+R++Q +LGH  +ST
Sbjct: 245 RISVKTVQYTVKKHLKNANLEGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVST 304

Query: 295 TQIYTNVN 302
           TQIYT+V+
Sbjct: 305 TQIYTHVD 312


>gi|332532602|ref|ZP_08408479.1| integron integrase IntI4 [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038023|gb|EGI74471.1| integron integrase IntI4 [Pseudoalteromonas haloplanktis ANT/505]
          Length = 320

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 113/259 (43%), Gaps = 52/259 (20%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q +   +  ++L+ +    K + K+ ++     L     K++  LP  L +++    ++N
Sbjct: 61  QNVAPNTQAQALNALSFLFKEVIKKPLSLS---LGFIKSKRATKLPVVLTQQE----INN 113

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRI 199
                    K   A++     LLYG G+R+ E L L   +I  D + +RI  GKG K R+
Sbjct: 114 FF-------KVCSAKHYLPCGLLYGSGMRLMEVLRLRIHDIDFDYNCIRIWDGKGGKNRV 166

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG--------------------------- 232
           V L   +   +     L    L L+++ PL+ G                           
Sbjct: 167 VTLAVELTPQLRSQIQLVDSYLQLDLKNPLYSGAYMPHLLRKKYPNHNRQLGWQYLFSSH 226

Query: 233 ----------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
                     +R   ++    QR +++      +    T HTLRHSFATHLL +G D+R+
Sbjct: 227 KLSIDPESKQLRRHHIDEKQLQRAVKKAAFDAHINKHVTPHTLRHSFATHLLQSGADIRT 286

Query: 283 IQSILGHFRLSTTQIYTNV 301
           +Q+ LGH  + TTQIYT+V
Sbjct: 287 VQTQLGHSDVRTTQIYTHV 305


>gi|295100462|emb|CBK98007.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 340

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 142/309 (45%), Gaps = 27/309 (8%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQ--TIRQLSYTEIRAFISKRRTQKI-G 84
           + +S  T+ SY CD   F +FL +  + E + I+  +I  L+   +  F+   R ++  G
Sbjct: 22  KNISTNTISSY-CDA--FRLFLGYCQDVEGMRIEKLSIDDLTPELVDHFLQWLRIERNNG 78

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE--KQALTLVDNVL 142
             +  + L+ I+SF+KYL+ ++     N   +  +    +  +A+N   K+A+ L+    
Sbjct: 79  TATRSQRLAAIRSFVKYLQIKEPRLLLNFQQILAIPVKRAERKAINPLTKEAIALI---- 134

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVP 201
           L     +     R++ IL  LY    R+ E   L  +++ +D  ++++I GKG K R+VP
Sbjct: 135 LRQPDTSTLSGRRDATILCFLYDTAARVQEICDLRIEDVRLDYPASVKILGKGRKTRVVP 194

Query: 202 LLPS----VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQRYIRQLRRY 253
           +LP+    ++K + E + L P        LPLF    G+ L       +  +Y +     
Sbjct: 195 ILPATAQNLKKYLTEMHMLAP----EKSHLPLFMNRNGQKLTRAGVTYILNKYAKAASVI 250

Query: 254 -LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +P     H +RH+ A H+     DL  ++  LGH  + TT IY   +       +  
Sbjct: 251 DPSVPEKIPPHLMRHTKAMHIYDADNDLVHVRDFLGHSDIKTTDIYARSSLTMKQKALER 310

Query: 313 IYDQTHPSI 321
           + D   PS+
Sbjct: 311 VSDSPVPSM 319


>gi|265763570|ref|ZP_06092138.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_16]
 gi|263256178|gb|EEZ27524.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_16]
          Length = 352

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 139/300 (46%), Gaps = 23/300 (7%)

Query: 21  WLQ-NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT-----EIRAF 74
           WL+ ++   +  S  T ++YE     +++FL   + ++I+ +T+    ++     E   +
Sbjct: 18  WLEYHVPSIKACSPYTKRNYETSVALYVMFLR--SVKQISPKTLSAQCFSLENMNEWILW 75

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + + R+      +++  LS +++FLKY+  + I   ++ L    +    +  R +     
Sbjct: 76  LKEHRSCSPATCNVR--LSALRAFLKYMADKDIAFMTSYLQAETVPNQKTPKRKVVGLSK 133

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--G 192
           + +  N L    ++      R+  ++  LY   +RI+E LSL   NI  D    RI   G
Sbjct: 134 MAV--NALFTVPNQRTIRGLRDYTLMLTLYSTAVRINELLSLKIGNIFTDGPKPRIIVIG 191

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +PLL    + I +Y   C  + N    L  +   RG  + P   +   + L+R
Sbjct: 192 KGRKKRPIPLLAKPVQYIKQYLAECHPNPNNPDALLFYSKSRGIYV-PMSAENVNKLLKR 250

Query: 253 YLGL--------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           Y  +        PL+  AH  RH+ A+H L NG ++  I  +LGH  + TT +Y ++ ++
Sbjct: 251 YAAIAKKICKEVPLNLHAHQFRHAKASHWLENGMNIAQISYLLGHECIQTTMVYLDITTE 310


>gi|89899991|ref|YP_522462.1| phage integrase [Rhodoferax ferrireducens T118]
 gi|89344728|gb|ABD68931.1| phage integrase [Rhodoferax ferrireducens T118]
          Length = 291

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 97/201 (48%), Gaps = 22/201 (10%)

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
           E  +  M++++  + LP  L++++   L+  V  H  H+T          L L YG GLR
Sbjct: 90  EEVMAKMQSVRVPHRLPVVLSKEEVARLLAAVG-HIKHQTA---------LSLAYGTGLR 139

Query: 170 ISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
           + E ++L   +I   + TLR+ QGKG K R   L P + + +  ++ +      +     
Sbjct: 140 VGEVVALKVSDIDSQRMTLRVEQGKGRKDRYAMLSPVLLERLRCWWRVARAQGKMLDGGW 199

Query: 229 LFRGIRGKPLNP----GVFQ--RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
           LF G     LNP    G  Q  R I +      +    + HTLRHSFATHLL    D+R 
Sbjct: 200 LFPG-----LNPIESLGTRQLNRAIHEAALVARIDKRVSMHTLRHSFATHLLEQKVDIRV 254

Query: 283 IQSILGHFRLSTTQIYTNVNS 303
           IQ +LGH RL TT  Y  V +
Sbjct: 255 IQVLLGHNRLDTTAQYVQVAT 275


>gi|10956538|ref|NP_043131.1| integrase/recombinase [Lactobacillus delbrueckii]
 gi|971481|emb|CAA90742.1| integrase/recombinase [Lactobacillus delbrueckii]
          Length = 333

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 146/328 (44%), Gaps = 35/328 (10%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP+I   +L+   Q  +    ++   S+ T+++Y    + F  +LA        +  I+Q
Sbjct: 23  LPKISMIDLILNEQV-MSAFIVDLNKSQSTIKTYTRCLKSFAQWLA--------MNGIQQ 73

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSN 123
            S + I+ ++     Q     ++   +  +K + K+L+ ++I  +   N+ N+R  K S 
Sbjct: 74  TSESTIKLYMQWLENQGRQPSTIHLYIVVVKRWFKWLEAKRIYPDVAKNVENVRVRKDS- 132

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM- 182
             P++  +   +  + + +  TS + K    RN A+L LL+ CGLR  EA      NI  
Sbjct: 133 --PKSFFQAHQVKKILDTVDQTSEKGK----RNYALLVLLFTCGLRTIEASRARVDNIRL 186

Query: 183 -DDQSTLRIQGKGDKIR--IVPLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGI--- 233
              Q  L I GKG K     VPL       + EY     + P D     Q PLF      
Sbjct: 187 NGSQLVLYIHGKGHKTDDDYVPLPDKTYAVLCEYLSTRGIKPKDFETCKQ-PLFTSTSNR 245

Query: 234 -RGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
            + + ++     +  +   R  G      TAH+ RH+ AT  L+NG DLR  Q +L H  
Sbjct: 246 SKDQSISTNAISKICKSCFRKAGYDQHDWTAHSTRHTAATLALTNGADLRETQMLLRHSS 305

Query: 292 LSTTQIYTN----VNSKNGGDWMMEIYD 315
            +TT+IY +    + ++ G D    I+D
Sbjct: 306 PTTTEIYLHQLGKLENQAGKDVANAIFD 333


>gi|255100620|ref|ZP_05329597.1| integrase/recombinase [Clostridium difficile QCD-63q42]
          Length = 346

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 121/258 (46%), Gaps = 15/258 (5%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           +IT + I + + +E   ++   R   I  R+ +  L  I++F KY  +  IT  S++  +
Sbjct: 54  EITFEMIDRNAVSEFLDYLETERNCSISTRNHR--LHCIRAFYKYAAQEDITVISHLEEI 111

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           + +KK+   P  + E  +   V+ +L      T+    R++ +L  LY  G R+ E + +
Sbjct: 112 QKVKKAKE-PETIVEHMSEDAVNAILKQPDTFTEK-GKRDAFLLLFLYKTGARVQELVDI 169

Query: 177 TPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
              +I +     + I GKG K R +PL   V + + +Y  L   + +L  +  LF   R 
Sbjct: 170 RLCDIQLGRHPKVTIHGKGAKTRSIPLRDDVVQHLKQYLALFHPEEHLFSEQHLFYVTRS 229

Query: 236 KPLNPGVFQRYIRQLRRYLG---------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           + +   + +  +RQL R  G         +P +   H  RHS+A  L  NG DL  I   
Sbjct: 230 R-MKKRMTEDNVRQLVRKYGKQAREICKEVPENVHPHLFRHSWAMILYQNGVDLTLISQW 288

Query: 287 LGHFRLSTTQIYTNVNSK 304
           LGH  L TT IY + +++
Sbjct: 289 LGHSNLETTLIYAHADTE 306


>gi|310766557|gb|ADP11507.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 345

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 144/317 (45%), Gaps = 40/317 (12%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKI--TIQTIRQLSYTEIRAFISKRRT--QKI 83
           ER  S+ TL+     T     F+ + +E  I    +  R +  +  R     R+   + +
Sbjct: 44  ERNWSETTLK---VQTHHGYRFICWASERGIHHAAEVTRPVLESWQRHLWQYRKANGEPL 100

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLVDNVL 142
             R+ + +L  ++ + ++L K+ +   +   ++   ++   LPR  L+ +Q   +V+   
Sbjct: 101 SPRTQRTALQPLQVWFRWLAKQNLILANPAADLELPRQEKHLPRTILSVEQVEGIVNLCD 160

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVP 201
           L+T         R+ A+L LL+  G+R  E   L   +    +  L I QGKG + R++P
Sbjct: 161 LNTLQ-----GMRDRALLELLWSTGIRRGEVARLETYSADFSRKILTIVQGKGKQDRVIP 215

Query: 202 L-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +           L  VR  +L   D     L ++       G+ G   N G+    +  L
Sbjct: 216 VGERALWWLRHYLHKVRPEVLVSPDCKALFLAMD-------GVAGLTAN-GITHAVVPYL 267

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           R   G+    + H  RH+ AT +L NG DLR IQ++LGH  + +TQIYT V+ +     +
Sbjct: 268 R-AAGIE-KGSCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRA----L 321

Query: 311 MEIYDQTHPS-ITQKDK 326
             ++  THP+  T+ DK
Sbjct: 322 QAVHASTHPAEQTEPDK 338


>gi|118592686|ref|ZP_01550076.1| Integrase [Stappia aggregata IAM 12614]
 gi|118593369|ref|ZP_01550753.1| Integrase [Stappia aggregata IAM 12614]
 gi|118593930|ref|ZP_01551286.1| Integrase [Stappia aggregata IAM 12614]
 gi|118433470|gb|EAV40141.1| Integrase [Stappia aggregata IAM 12614]
 gi|118434047|gb|EAV40704.1| Integrase [Stappia aggregata IAM 12614]
 gi|118434737|gb|EAV41388.1| Integrase [Stappia aggregata IAM 12614]
          Length = 287

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/144 (40%), Positives = 75/144 (52%), Gaps = 10/144 (6%)

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLC-PFDL 221
           Y  GLR+SE + L   +I   +  +RI+ GKG K R V L   +   +  Y+ L  P D 
Sbjct: 131 YAAGLRVSEVVGLKVADIDSQRGVIRIRHGKGGKDRYVMLSAQLLHILRTYWRLARPPDW 190

Query: 222 NLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
                  LF    G  P++  V     R  R   G+    T HTLRHSFATHLL NG D+
Sbjct: 191 -------LFPRRNGSGPISITVLHAACRSARAAAGIDKRVTVHTLRHSFATHLLENGTDI 243

Query: 281 RSIQSILGHFRLSTTQIYTNVNSK 304
           R IQ +LGH  LS+T  YT V+S+
Sbjct: 244 RIIQVLLGHNNLSSTARYTKVSSR 267


>gi|118474094|ref|YP_892018.1| phage integrase family site specific recombinase [Campylobacter
           fetus subsp. fetus 82-40]
 gi|118413320|gb|ABK81740.1| site-specific recombinase, phage integrase family [Campylobacter
           fetus subsp. fetus 82-40]
          Length = 354

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 12/187 (6%)

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K   LP  +NE++    ++ +      + K    RN  I+  +   G+R+SEAL+L  ++
Sbjct: 160 KGQKLPEFMNEEEVKRFLNAI---DETDFKMNSNRNKLIIKTIVFTGIRVSEALNLKRKD 216

Query: 181 IMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKP 237
           I +D     LRI+GKG+K RIV     ++K +++ + L    +N +N +  LF    G+ 
Sbjct: 217 ISEDGDLYILRIRGKGNKYRIVM----IKKHLIDEH-LQNIVINYINSEGYLFVNRNGEK 271

Query: 238 LNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           L      R + Q+    G+      AH LRH+FAT L     DL  +Q  LGH  L+T++
Sbjct: 272 LTQAYVSRIVEQILFGAGIRKEKNGAHMLRHTFATMLYKKQKDLVLVQEALGHASLNTSR 331

Query: 297 IYTNVNS 303
           IYT+ +S
Sbjct: 332 IYTHFDS 338


>gi|241992549|gb|ACS73618.1| IntI1 [uncultured bacterium]
          Length = 330

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 88/177 (49%), Gaps = 37/177 (20%)

Query: 162 LLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIV----PLLPSVRKAILEYYDL 216
           LLYG GLRI+EAL L  +++    ++ +  +GKG K R+V     L+P++R+ +     +
Sbjct: 154 LLYGTGLRITEALQLRVKDLDFGHRAVIVREGKGAKDRVVMLPQSLMPALREQLGRVRAV 213

Query: 217 CPFDLNLN---IQLP------------------LFRG-----------IRGKPLNPGVFQ 244
              D+      +++P                  +F             IR   L    FQ
Sbjct: 214 WAADVEAGTAGVEMPHALDRKYPRMGASWAWFWVFPQDHHSTDPRSGVIRRHHLYDQTFQ 273

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R  ++     G+    T HTLRHSFATHLL +G D+R++Q +LGH  ++TT IYT+V
Sbjct: 274 RAFKRAVVAAGIEKPATPHTLRHSFATHLLQSGSDIRTVQELLGHADVATTMIYTHV 330


>gi|148261334|ref|YP_001235461.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|326403318|ref|YP_004283399.1| putative transposase for insertion sequence element [Acidiphilium
           multivorum AIU301]
 gi|326404178|ref|YP_004284260.1| putative transposase for insertion sequence element [Acidiphilium
           multivorum AIU301]
 gi|146403015|gb|ABQ31542.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|325050179|dbj|BAJ80517.1| putative transposase for insertion sequence element [Acidiphilium
           multivorum AIU301]
 gi|325051040|dbj|BAJ81378.1| putative transposase for insertion sequence element [Acidiphilium
           multivorum AIU301]
          Length = 301

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 126/295 (42%), Gaps = 36/295 (12%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ  L+++ + RGL   T + Y    + F  FL    +           +  +IR F   
Sbjct: 14  RQRMLEDMAM-RGLRSATQRDYIRFVQSFAAFLRRPPDTA---------TAEDIRRFQVH 63

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +    +   ++  S+S ++ F      R   +   +L     +    LP  L+       
Sbjct: 64  QHESGVQPPTINCSVSALRFFFTVTLDRPDLSRRLVLA----RSPRKLPDVLS------- 112

Query: 138 VDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKG 194
           VD V  LL  +   K+      AIL   YG GLR+SE  SL   +I   +  +R+ QGKG
Sbjct: 113 VDEVGRLLEAAPGIKY-----KAILGTAYGAGLRVSEVASLKVDDIDSTRMLIRVEQGKG 167

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRG-IRGKPLNPGVFQRYIRQL 250
            K R   L P +   +  ++          + LP   LF G     P++     R + + 
Sbjct: 168 RKDRNAMLSPQLLALLRLWWTEGK---RRGVMLPHGWLFPGRSAADPVSTRQINRAVHEA 224

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
               G+    + HTLRHSFATHLL    D+R IQ +LGH +L TT +Y  V +K 
Sbjct: 225 AEAAGIRKRVSPHTLRHSFATHLLEQDVDIRVIQVLLGHSKLDTTALYARVATKT 279


>gi|291522918|emb|CBK81211.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 282

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 133/286 (46%), Gaps = 32/286 (11%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           ++N   +R L + T+Q Y  D   FL ++          + +  L+  +  +F++ +R +
Sbjct: 9   IRNEAEKRNLRERTIQLYCSDVSYFLRWIG---------KNVSDLTLEDAESFLTAKRLE 59

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
               RS   + +  +S +K+L K+ + T  +   +  +K+  +LP  L+  +   ++D  
Sbjct: 60  G---RS-PETHNHYRSAIKFLYKKVLKTVWDDDTVPAMKRERNLPAVLSRDEINAIIDAT 115

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV 200
                      + ++ AI+  +Y  GLR+SE + L   +I     T+ + + KG   R  
Sbjct: 116 ----------PNLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGRIDRYT 165

Query: 201 PLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            L       + EY+  C  P D    I  P      G  L+     ++ ++  +  G+  
Sbjct: 166 ILSQKNLDLLTEYWYKCGRPKD----ILFP--SSWSGGYLDIASVNQFFKKSAKLAGINR 219

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             ++H  RHSFA+HL  +G D++ IQS+LGH    +T +Y +V++K
Sbjct: 220 HVSSHACRHSFASHLFESGTDIKYIQSLLGHVDPRSTDVYLHVSNK 265


>gi|217968717|ref|YP_002353951.1| integrase [Thauera sp. MZ1T]
 gi|217506044|gb|ACK53055.1| integrase family protein [Thauera sp. MZ1T]
          Length = 291

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 105/219 (47%), Gaps = 16/219 (7%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           SL  ++SG+K F     +R       +  M+ ++    LP  L+ ++   L+     +  
Sbjct: 71  SLNAAISGLKFFFDITLQRG----ELMARMQPVRLPQRLPVVLSREEVARLI-AACNNLK 125

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205
           H+T          L L Y  GLR SE +SL   ++   + TLR+ QGKG K R   L P 
Sbjct: 126 HQTA---------LSLAYATGLRASEVVSLKVSDVDSGRMTLRVEQGKGRKDRYAMLSPL 176

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           + + +  ++ +      +     LF G+   + L+P    R ++      G+    + HT
Sbjct: 177 LLERLRVWWRVARAQGKMLDGGWLFPGLNPIESLSPRQLNRAVQAAALAAGIDKRVSMHT 236

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           LRH FATHLL    D+R IQ++LGH +L TT IYT V +
Sbjct: 237 LRHCFATHLLEQKVDIRIIQALLGHKKLDTTVIYTQVAT 275


>gi|253577473|ref|ZP_04854788.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843173|gb|EES71206.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 326

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 105/226 (46%), Gaps = 19/226 (8%)

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           R++  +L  +K F K+L +  I   +    +R LK   SL     +          L   
Sbjct: 85  RTINCNLCILKEFFKFLYEDGIAEANIAAELRPLKVKTSLTHTFTDGHL-----QRLFVQ 139

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLP 204
              + +   RN  I+ +L   G+R+ E  +L   N+  D+ TLRI QGKG K R+VP+  
Sbjct: 140 PDRSTFTGYRNYVIMLVLLETGIRLKELANLRVTNVFLDEGTLRIIQGKGRKARMVPIQH 199

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR-QLRRYLGLP----LS 259
                + +Y     F+        L+  +   P     ++  IR  + RY        + 
Sbjct: 200 VAAFELKQYM----FERGTLETDRLWVTLDNHPF----YEAGIRVMISRYCIAANIQGVQ 251

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            + HT RH+FA   L NGGD+ +++SILGH R+ TT++Y  + S++
Sbjct: 252 CSCHTFRHTFAKKYLMNGGDVFTLKSILGHERIETTEMYVELFSRD 297


>gi|330826233|ref|YP_004389536.1| integron integrase [Alicycliphilus denitrificans K601]
 gi|329311605|gb|AEB86020.1| integron integrase [Alicycliphilus denitrificans K601]
          Length = 332

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 139/310 (44%), Gaps = 60/310 (19%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLS 93
           T Q+Y    R+F++F           +  R+L   ++ AF++    ++ +   +  ++ +
Sbjct: 35  TEQAYVDWARRFILFHG--------KRHPRELGAPDVTAFLTHLAVERNVSASTQNQAKA 86

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            I    K + ++ +     +++ R   K   LP  L +++    V  +LLH    T+W+ 
Sbjct: 87  AILFLYKEVLQQDLPWLDEVVSAR---KPRRLPVVLTQRE----VRELLLHLQ-GTQWL- 137

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--------IVPLLP 204
                +  LLYG G+RI EAL L  +++  ++  L + +GKG+K R        I PL  
Sbjct: 138 -----VSSLLYGTGMRILEALRLRVKDVEFERRELIVREGKGNKDRVTVLPENLIAPLRE 192

Query: 205 SVRKA-ILEYYDL--------CPFDLNLNI---------QLPLFRGIRGKPLNPGV---- 242
            + +A +L   DL         P  L +           Q      +R      GV    
Sbjct: 193 QMERARMLHRKDLDAGLGAVWLPDALAVKYANAATAWGWQYVFPSAVRSVDPRSGVERRH 252

Query: 243 ------FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
                  Q+ +    R  G+    T H LRHSFATHLL  G D+R++Q +LGH  +STT 
Sbjct: 253 HMLEQSVQKAVALAARRAGIDKPCTPHVLRHSFATHLLQAGYDIRTVQELLGHKDVSTTM 312

Query: 297 IYTNVNSKNG 306
           IYT+V +K G
Sbjct: 313 IYTHVLNKGG 322


>gi|46198918|ref|YP_004585.1| DNA integration/recombination/invertion protein [Thermus
           thermophilus HB27]
 gi|46196542|gb|AAS80958.1| DNA integration/recombination/invertion protein [Thermus
           thermophilus HB27]
          Length = 313

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 137/297 (46%), Gaps = 46/297 (15%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + + L +ERG S   ++ Y  D      +  F   E +        S   +RA + +   
Sbjct: 34  YAEYLLLERGYSPRGVRRYLQD---LAFWFRFLEAEGLPP------SPEAVRALLLR--- 81

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKKSNSLPRALNEKQALTLVD 139
           ++   R ++  L+ ++S+ +YL++ K    S+    +   K    LP     ++    ++
Sbjct: 82  ERWAPRRVQGFLAALRSYYRYLREVKGEAASDPTEGIGRPKAGRRLPLHPGPEELKRFLE 141

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKGDK 196
                   E   ++A    +   LYG GLRISEALSL  +N++ +  +   +R+ GKG+K
Sbjct: 142 A--FREEKEAALLEA----LARFLYGTGLRISEALSLKGRNVVLEGGSPVAVRVVGKGNK 195

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNI----------QLPLFRGIRGKPLNPGVFQRY 246
            R+VPL  + R+ +LE   L     N+NI           +P  R +  K          
Sbjct: 196 ERLVPLSKTARE-VLE--ALGRLQGNVNIFTFSQGRRKGHVPSARWVEAK---------- 242

Query: 247 IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            R+     GL P   T H LRH++AT L+  G +L +++ +LGH  ++TTQIY + +
Sbjct: 243 FREAALRAGLDPRRFTPHKLRHAYATLLVERGVELDAVKDLLGHESIATTQIYLHAS 299


>gi|257485790|ref|ZP_05639831.1| Orf28 [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|302130312|ref|ZP_07256302.1| Orf28 [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|331012886|gb|EGH92942.1| Orf28 [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 319

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 128/295 (43%), Gaps = 41/295 (13%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W  NL+  R     T ++Y+ D   F  F+   + +       RQ++ + + A+ +    
Sbjct: 32  WFANLDNPR-----TRRAYQNDLTDFSSFIGLASADDF-----RQVTRSHVLAWRADLEH 81

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVD 139
           + +   +++R L+ + S   +L       E+N +   N       PR   NE +   L D
Sbjct: 82  RGLAGATIRRKLAALASLFDHL------LENNAVAGGNPVHGVKRPRIETNEGKTPALGD 135

Query: 140 NV---LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194
           +    LL           R+ AIL +L   GLR  EA  L   ++ + +    LR+ GKG
Sbjct: 136 HQAKQLLEAPDTETLKGLRDRAILAVLLYHGLRREEAAQLHTHDLQERRGIKHLRVHGKG 195

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG--------VFQRY 246
            KIR +PL P   + I  Y  L   +       PLFR +RG     G        V + Y
Sbjct: 196 SKIRFLPLHPVAAERIHAY--LEQDNERAATPGPLFRSLRGTTTGAGITANGIYTVVEAY 253

Query: 247 IRQ---LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            ++   +  +LG+      H LR + AT+ L +  D+  +Q  LGH  +STT++Y
Sbjct: 254 AKKAGIVVEHLGV------HGLRATAATNALEHDADIAKVQMWLGHANISTTRLY 302


>gi|223972389|dbj|BAH23420.1| site-specific tyrosine recombinase [Vibrio cholerae O1 biovar El
           tor]
          Length = 361

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 120/248 (48%), Gaps = 51/248 (20%)

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           +L  I    K++ +R++T   + +  R  K+   +P  L+  +A+++++           
Sbjct: 114 ALCAIVFMYKHILQRELTLLPDTIKARAPKR---VPSVLSHNEAMSIINQ---------- 160

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKG--DKIRIVP--LLPS 205
            +      +  LLYGCGLR +E L L  ++I  + ++    +GKG  D+++++P  L+  
Sbjct: 161 -LSGSYKLMFSLLYGCGLRKAELLMLRVKDIDFESRNVYVFRGKGGKDRVKMLPEKLVEP 219

Query: 206 VRKAI-----LEYYDLC----------------PFDL-NLNIQLPLFRGIRGK-PLNPGV 242
           ++  I     L   DLC                P+ + +   Q      +R K P++  V
Sbjct: 220 LKLHIEKVRDLHEKDLCEGEGKTSLPSGLARKYPYAISDFKWQFIFPSSVRCKHPVDGYV 279

Query: 243 FQRYI------RQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            + ++      ++LR  +   G+    TAH  RHSFAT LL  G D+R++Q +LGH  L 
Sbjct: 280 CRHHLHWTSLTKKLRSAVIRSGVQKHVTAHIFRHSFATQLLKAGTDIRTVQELLGHSDLK 339

Query: 294 TTQIYTNV 301
           TTQIYT+V
Sbjct: 340 TTQIYTHV 347


>gi|323936701|gb|EGB32986.1| phage integrase [Escherichia coli E1520]
          Length = 337

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 129/305 (42%), Gaps = 44/305 (14%)

Query: 8   EIVSFELL----KERQNWLQNLEIERGLSKLTL------QSYECDTRQFLIFLAFYTEEK 57
           E V+FE         + WL     +R LS+LT         +E   R  L  +  +T  K
Sbjct: 34  EAVAFEKYTLYNHHNKEWLSKPTDKRRLSELTQIWWDLKGKHEEHGRSNLGKIEIFT--K 91

Query: 58  ITIQTIR-QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILN 115
           IT      Q++ + I  + + RR+Q I   S+ R L+ I   F   ++      E  I  
Sbjct: 92  ITNDPCAFQITKSLISQYCATRRSQGIKPSSINRDLTCISGMFTALIEAELFFGEHPIRG 151

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
            + LK+       L +++   L+             +D  N  I  L    G R  EA  
Sbjct: 152 TKRLKEEKPDTGYLTQEEIALLLAA-----------LDGDNKKIAILCLSTGARWGEAAR 200

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           L  +NI+ ++ T  ++ K +K R VP+  +V K I +                  RG   
Sbjct: 201 LKAENIIHNRVTF-VKTKTNKPRTVPISEAVAKMIADNK----------------RGFLF 243

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
              +   F+R ++ ++    LP+    H LRHSFATH + NGG + ++Q ILGH R+  T
Sbjct: 244 PDADYPRFRRTMKAIKP--DLPMGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQT 301

Query: 296 QIYTN 300
            +Y +
Sbjct: 302 MVYAH 306


>gi|84468558|dbj|BAE71364.1| hypothetical protein [Vibrio cholerae O139]
 gi|84468563|dbj|BAE71368.1| hypothetical protein [Vibrio cholerae O139]
 gi|84468567|dbj|BAE71371.1| hypothetical protein [Vibrio cholerae O139]
          Length = 183

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 79/168 (47%), Gaps = 38/168 (22%)

Query: 172 EALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSVRKAIL---EYYDL------- 216
           E + L  Q+I  D   +RI QGKG K R V     L P +++ I     YYD        
Sbjct: 2   ECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNY 61

Query: 217 ---------------CPFDLNLNIQLPLFR--------GIRGKPLNPGVFQRYIRQLRRY 253
                           P++   +   P F+         +R   +N  V Q+ +R+  + 
Sbjct: 62  GGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQE 121

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            G+  + T HTLRHSFATHLL  G D+R++Q  LGH  + TTQIYT+V
Sbjct: 122 AGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 169


>gi|9630357|ref|NP_046786.1| Int [Enterobacteria phage P2]
 gi|117624294|ref|YP_853207.1| putative phage integrase [Escherichia coli APEC O1]
 gi|168750144|ref|ZP_02775166.1| integrase [Escherichia coli O157:H7 str. EC4113]
 gi|168756346|ref|ZP_02781353.1| integrase [Escherichia coli O157:H7 str. EC4401]
 gi|168770061|ref|ZP_02795068.1| integrase [Escherichia coli O157:H7 str. EC4486]
 gi|168775961|ref|ZP_02800968.1| integrase [Escherichia coli O157:H7 str. EC4196]
 gi|168782415|ref|ZP_02807422.1| integrase [Escherichia coli O157:H7 str. EC4076]
 gi|168798987|ref|ZP_02823994.1| integrase [Escherichia coli O157:H7 str. EC508]
 gi|195937855|ref|ZP_03083237.1| putative phage integrase [Escherichia coli O157:H7 str. EC4024]
 gi|208807655|ref|ZP_03249992.1| integrase [Escherichia coli O157:H7 str. EC4206]
 gi|208813905|ref|ZP_03255234.1| integrase [Escherichia coli O157:H7 str. EC4045]
 gi|208818402|ref|ZP_03258722.1| integrase [Escherichia coli O157:H7 str. EC4042]
 gi|209400896|ref|YP_002271366.1| integrase [Escherichia coli O157:H7 str. EC4115]
 gi|254793910|ref|YP_003078747.1| integrase [Escherichia coli O157:H7 str. TW14359]
 gi|307314933|ref|ZP_07594523.1| integrase family protein [Escherichia coli W]
 gi|6136261|sp|P36932|VINT_BPP2 RecName: Full=Integrase
 gi|3139116|gb|AAD03297.1| Int [Enterobacteria phage P2]
 gi|115513418|gb|ABJ01493.1| putative phage integrase [Escherichia coli APEC O1]
 gi|187768624|gb|EDU32468.1| integrase [Escherichia coli O157:H7 str. EC4196]
 gi|188015634|gb|EDU53756.1| integrase [Escherichia coli O157:H7 str. EC4113]
 gi|189000073|gb|EDU69059.1| integrase [Escherichia coli O157:H7 str. EC4076]
 gi|189356536|gb|EDU74955.1| integrase [Escherichia coli O157:H7 str. EC4401]
 gi|189360964|gb|EDU79383.1| integrase [Escherichia coli O157:H7 str. EC4486]
 gi|189378536|gb|EDU96952.1| integrase [Escherichia coli O157:H7 str. EC508]
 gi|208727456|gb|EDZ77057.1| integrase [Escherichia coli O157:H7 str. EC4206]
 gi|208735182|gb|EDZ83869.1| integrase [Escherichia coli O157:H7 str. EC4045]
 gi|208738525|gb|EDZ86207.1| integrase [Escherichia coli O157:H7 str. EC4042]
 gi|209162296|gb|ACI39729.1| integrase [Escherichia coli O157:H7 str. EC4115]
 gi|254593310|gb|ACT72671.1| integrase [Escherichia coli O157:H7 str. TW14359]
 gi|306905639|gb|EFN36169.1| integrase family protein [Escherichia coli W]
 gi|315061400|gb|ADT75727.1| putative phage integrase [Escherichia coli W]
 gi|323378021|gb|ADX50289.1| integrase family protein [Escherichia coli KO11]
 gi|323951882|gb|EGB47756.1| phage integrase [Escherichia coli H252]
 gi|323961683|gb|EGB57287.1| phage integrase [Escherichia coli H489]
          Length = 337

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 105/237 (44%), Gaps = 31/237 (13%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSN 123
           Q++ + I  + + RR+Q I   S+ R L+ I   F   ++      E  I   + LK+  
Sbjct: 100 QITKSLISQYCATRRSQGIKPSSINRDLTCISGMFTALIEAELFFGEHPIRGTKRLKEEK 159

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
                  E   LT  +  LL  +     +D  N  I  L    G R  EA  L  +NI+ 
Sbjct: 160 P------ETGYLTQEEIALLLAA-----LDGDNKKIAILCLSTGARWGEAARLKAENIIH 208

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           ++ T  ++ K +K R VP+  +V K I +                  RG      +   F
Sbjct: 209 NRVTF-VKTKTNKPRTVPISEAVAKMIADNK----------------RGFLFPDADYPRF 251

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +R ++ ++    LP+    H LRHSFATH + NGG + ++Q ILGH R+  T +Y +
Sbjct: 252 RRTMKAIKP--DLPMGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAH 306


>gi|168208010|ref|ZP_02634015.1| putative integrase/recombinase [Clostridium perfringens E str.
           JGS1987]
 gi|170660693|gb|EDT13376.1| putative integrase/recombinase [Clostridium perfringens E str.
           JGS1987]
          Length = 284

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 135/292 (46%), Gaps = 42/292 (14%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE----IRAFISKRR 79
           N+E   GLS+ TL+ YE D   F      Y E K  I+++  ++  E    I  +I+  +
Sbjct: 10  NIESNNGLSEGTLKKYEIDLNLFF----EYMEHKQNIKSLNSVTGEEGQKIIDRYINYLK 65

Query: 80  TQKIGDRSLKRSLSGIKSFLKYL------KKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            +     ++   +  I  FLKYL      K  K+  +  I N+ + ++   L RA  +  
Sbjct: 66  REGYKPSTINGKIVSINKFLKYLGHEFKAKAIKVQNKMYIENIISEREFERLIRACKD-- 123

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                              + R+  I+  L   GLRISE LSLT  +    + ++ I GK
Sbjct: 124 -------------------NKRDYTIIMTLANTGLRISELLSLTIND--PKKESIYIYGK 162

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R + L P ++K + +Y D   + +  + +L LF G RG  L      + + + ++ 
Sbjct: 163 GGKGRELILSPQLKKILNDYID--NYRMKTHKRL-LFTGERG-ALKRNAINKMLLKYQKK 218

Query: 254 LGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            G+       H+ RH +A +L+S G  L  IQ++LGH  ++TT IYT  + K
Sbjct: 219 TGISKEKMHPHSFRHFYAKYLISKGIGLDIIQTLLGHENINTTSIYTKSSKK 270


>gi|116511440|ref|YP_808656.1| integrase-recombinase [Lactococcus lactis subsp. cremoris SK11]
 gi|116107094|gb|ABJ72234.1| Integrase [Lactococcus lactis subsp. cremoris SK11]
          Length = 311

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 136/291 (46%), Gaps = 31/291 (10%)

Query: 25  LEIERG-LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           LE++ G  SK T+++Y     +F+ F       ++ I  I ++ Y   + FIS+     +
Sbjct: 12  LELKLGNYSKETMETYRQHIDKFIDFYKKEISNEMDIYAINKIHY---KLFISQLLDNSL 68

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN--- 140
               +   L   K+F  YL + ++   S + +++ LK++         KQALT  ++   
Sbjct: 69  RATYINAILKSNKAFYSYLIREQVLKTSPMDSIKLLKET---------KQALTTFNDDEV 119

Query: 141 -VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             +L+  +   +++ARN  I+ +L   G+RISE +++   ++ D    +R+ GKGDK R+
Sbjct: 120 KAMLNVWNFNTYLNARNKCIIAVLADTGIRISELINIKDSDLTD--QYIRVLGKGDKWRV 177

Query: 200 VPLLPSVRKAILEYYDLCPFDLNL---------NIQLPLFRGIRGKPLNPGV-FQRYIRQ 249
           VP+   +   + +Y  L     N           +   LF G  G+ +      +  I Q
Sbjct: 178 VPISNELNYLLTKYKRLRDNHFNKIRNRNGKVRELDSELFLGKTGRSIKTITNIEVMIAQ 237

Query: 250 --LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             L+  +   +  + H  RH +    L  G D+ +I  +LGH  LSTTQIY
Sbjct: 238 TGLQANVRASVRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIY 288


>gi|29028384|gb|AAO64735.1| integrase [Enterobacteria phage P2]
          Length = 337

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 105/237 (44%), Gaps = 31/237 (13%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSN 123
           Q++ + I  + + RR+Q I   S+ R L+ I   F   ++      E  I   + LK+  
Sbjct: 100 QITKSLISQYCATRRSQGIKPSSINRDLTCISGMFTALIEAELFFGEHPIRGTKRLKEEK 159

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
                  E   LT  +  LL  +     +D  N  I  L    G R  EA  L  +NI+ 
Sbjct: 160 P------ETGYLTQEEIALLLAA-----LDGDNKKIAILCLSTGARWGEAARLKAENIIH 208

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           ++ T  ++ K +K R VP+  +V K I +                  RG      +   F
Sbjct: 209 NRVTF-VKTKTNKPRTVPISEAVAKMIADNK----------------RGFLFPDADYPRF 251

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +R ++ ++    LP+    H LRHSFATH + NGG + ++Q ILGH R+  T +Y +
Sbjct: 252 RRTMKAIKP--DLPMGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAH 306


>gi|16197749|gb|AAK95987.1| site-specific tyrosine recombinase [Vibrio cholerae O1 biovar El
           Tor]
          Length = 362

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 120/248 (48%), Gaps = 51/248 (20%)

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           +L  I    K++ +R++T   + +  R  K+   +P  L+  +A+++++           
Sbjct: 115 ALCAIVFMYKHILQRELTLLPDTIKARAPKR---VPSVLSHNEAMSIINQ---------- 161

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKG--DKIRIVP--LLPS 205
            +      +  LLYGCGLR +E L L  ++I  + ++    +GKG  D+++++P  L+  
Sbjct: 162 -LSGSYKLMFSLLYGCGLRKAELLMLRVKDIDFESRNVYVFRGKGGKDRVKMLPEKLVEP 220

Query: 206 VRKAI-----LEYYDLC----------------PFDL-NLNIQLPLFRGIRGK-PLNPGV 242
           ++  I     L   DLC                P+ + +   Q      +R K P++  V
Sbjct: 221 LKLHIEKVRDLHEKDLCEGEGKTSLPSGLARKYPYAISDFKWQFIFPSSVRCKHPVDGYV 280

Query: 243 FQRYI------RQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            + ++      ++LR  +   G+    TAH  RHSFAT LL  G D+R++Q +LGH  L 
Sbjct: 281 CRHHLHWTSLTKKLRSAVIRSGVQKHVTAHIFRHSFATQLLKAGTDIRTVQELLGHSDLK 340

Query: 294 TTQIYTNV 301
           TTQIYT+V
Sbjct: 341 TTQIYTHV 348


>gi|258651475|ref|YP_003200631.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258652720|ref|YP_003201876.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258653844|ref|YP_003203000.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258554700|gb|ACV77642.1| integrase family protein [Nakamurella multipartita DSM 44233]
 gi|258555945|gb|ACV78887.1| integrase family protein [Nakamurella multipartita DSM 44233]
 gi|258557069|gb|ACV80011.1| integrase family protein [Nakamurella multipartita DSM 44233]
          Length = 334

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 120/269 (44%), Gaps = 26/269 (9%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI---LNMRNLKK 121
           +++  ++  FI ++R  + G+  + R   G         KR++ T S +   L +R L  
Sbjct: 58  EVTTADVLRFIERQRAARNGN--VVRLADGESGLALTTIKRRLATVSGLFEYLAIRGLVA 115

Query: 122 SNSLPRALNEKQALTLVDNV-----------LLHTSHETKWIDA----RNSAILYLLYGC 166
            N +PR+L+ +     V              +L  +     I A    R+ A+++L+   
Sbjct: 116 RNPVPRSLSARPGRAPVRGAPLIRAPRRLPRILSPAEVNALISALRTARDRAMVWLMLLG 175

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           GLR  E L L  +++   +  + + GKG   R+VP+       +  YY     D + +  
Sbjct: 176 GLRRCEVLGLRHRDVQPGERRVFVTGKGGHERVVPVGKVFFAELAGYYATERPDTDTDQV 235

Query: 227 LPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
             + +G R G+PL+       +   RR  GL    T H LRH+  T L  +G  L +IQ+
Sbjct: 236 FVVLKGQRRGQPLSAAGVDEVLSGARRRAGL-AHATCHELRHTCFTRLRESGMALEAIQA 294

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
             GH  + TT+IY ++      DW+++ Y
Sbjct: 295 QAGHVSIETTKIYLHLAP----DWLVDEY 319


>gi|91204063|emb|CAJ71716.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 433

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 84/190 (44%), Gaps = 39/190 (20%)

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRK 208
           K +  RN  I+ L+YG GLR+ E   L  ++I  D + + ++ GKGDK R   +LP   K
Sbjct: 224 KQVKGRNLLIIQLIYGSGLRLMELARLRVKDIDFDSNMIFVRSGKGDKDRST-MLPEFVK 282

Query: 209 -----------------------------AILEYYDLCPFDLNLNIQLPLFR-------- 231
                                        A+   Y   P D       P  R        
Sbjct: 283 PELKLHLDKVKVLHNEDVEKGYGEVYLPNALDRKYPNAPKDWGWQYVFPSERLSVDLRSG 342

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
            IR   L+    Q  ++   +  G+  + + HTLRHSFATHLL NG ++R +Q +LGH  
Sbjct: 343 KIRRHHLSDKAIQNMVKGAVKKAGIVKNASVHTLRHSFATHLLMNGVNIREVQDLLGHKN 402

Query: 292 LSTTQIYTNV 301
           L TT IYT+V
Sbjct: 403 LETTMIYTHV 412


>gi|167623565|ref|YP_001673859.1| integron integrase [Shewanella halifaxensis HAW-EB4]
 gi|167353587|gb|ABZ76200.1| integron integrase [Shewanella halifaxensis HAW-EB4]
          Length = 320

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 134/309 (43%), Gaps = 58/309 (18%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RG S  T ++Y    + F+ F     ++K   +T+ Q   T+  +F++  R   I  +  
Sbjct: 19  RGYSIKTEKAYLYWIKAFINF-----QQKRHPETMGQAEVTQFLSFLANSRNVAINTQ-- 71

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           K +L+     L YL  + +  +   L  R   K   LP  L+ ++    V  VL      
Sbjct: 72  KVALNA----LVYLYHKHLKQDLGDLGFRYATKQRQLPIVLSTEE----VSEVLCQ---- 119

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR--------- 198
              ++ R+  I+ LLYG GLR+SE L L  Q+I   + +L ++ GKG K R         
Sbjct: 120 ---LNGRDQLIVQLLYGSGLRVSECLRLRIQDIDLARCSLTVRNGKGHKDRQTILSQKCA 176

Query: 199 ---------------------IVPLLPSV--RK---AILEYYDLCPFDLNLNIQLPLFRG 232
                                I P LP+   RK   A  +   +  F        P  + 
Sbjct: 177 IKLPAYIDAARAIQIKDNTYCIGPSLPNALERKYPNAFRQAGWMFVFPSTTTSDNPYTKT 236

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                L+  V ++ +    R   +    T HT RHSFATHLL  G D+R+IQ +LGH  +
Sbjct: 237 HCRHHLHQSVIRKALAAAVRKTHIIKRVTCHTFRHSFATHLLQAGRDIRTIQELLGHNDV 296

Query: 293 STTQIYTNV 301
           +TTQIYT+V
Sbjct: 297 NTTQIYTHV 305


>gi|323479888|gb|ADX79327.1| phage integrase family protein [Enterococcus faecalis 62]
          Length = 223

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 100/200 (50%), Gaps = 12/200 (6%)

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE---KQALTLVDNVLLHTSH 147
           S+S +K    Y+   K    +  +++  LK+   +   LN+   KQ LT+         H
Sbjct: 14  SVSRLKKLFDYMLIEKYIDYNPFVDIERLKEQRKVIYPLNDYEIKQMLTVA------KKH 67

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
             K I  RN  IL L+  CGLRISE   +  ++IM++Q  +R + K +K R V + P ++
Sbjct: 68  PYKHIAQRNVVILMLMIECGLRISEVCEIRDEDIMNNQIIIR-KSKNNKDRAVAVSPILK 126

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTL 265
           K I++Y  +      L    P      GK LN     + ++++++ + +   +  + HTL
Sbjct: 127 KEIIKYQRIKKRKFGLLEGNPFIVSNLGKKLNEKSIWQIMQEIKKQIDIRDCVRFSGHTL 186

Query: 266 RHSFATHLLSNGGDLRSIQS 285
           RH++A+  L NG D+ ++ S
Sbjct: 187 RHTYASMQLRNGLDIYTLSS 206


>gi|15672627|ref|NP_266801.1| integrase-recombinase [Lactococcus lactis subsp. lactis Il1403]
 gi|12723549|gb|AAK04743.1|AE006297_6 integrase-recombinase [Lactococcus lactis subsp. lactis Il1403]
          Length = 312

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 136/291 (46%), Gaps = 31/291 (10%)

Query: 25  LEIERG-LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           LE++ G  SK T+  YE    +F+ F      +++ I  I ++ Y   + FIS+     +
Sbjct: 13  LELKLGNYSKKTMAVYEQHIDKFIDFYKKEICKEMDIYAINKMHY---KLFISQLLDNSL 69

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN--- 140
               +   L   K+F  YL + ++   S + +++ LK++         KQALT  ++   
Sbjct: 70  RATYINAILKSNKAFYSYLIREQVLKTSPMDSIKLLKET---------KQALTTFNDDEV 120

Query: 141 -VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             +L+  +   +++ARN  I+ +L   G+RISE +++   ++ D    +R+ GKGDK R+
Sbjct: 121 KAMLNVWNFNTYLNARNKCIIAVLADTGIRISELINIKDSDLTD--QYIRVLGKGDKWRV 178

Query: 200 VPLLPSVRKAILEYYDLCPFDLNL---------NIQLPLFRGIRGKPLNPGV-FQRYIRQ 249
           VP+   +   + +Y  L     N           +   LF G  G+ +      +  I Q
Sbjct: 179 VPISNELNYLLTKYKRLRDNHFNKIRNRNGKVRELDSELFLGNTGRSIKTITNIEVMITQ 238

Query: 250 --LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             L+  +   +  + H  RH +    L  G D+ +I  +LGH  LSTTQIY
Sbjct: 239 TGLQANVRASVRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIY 289


>gi|254512553|ref|ZP_05124619.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11]
 gi|221532552|gb|EEE35547.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11]
          Length = 158

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/139 (38%), Positives = 74/139 (53%), Gaps = 8/139 (5%)

Query: 168 LRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           +R SE  +LT  +I  D+  + + QGKG K R V L P +   + +Y+  C        +
Sbjct: 1   MRASEVCNLTTGDIDSDRMLIHVVQGKGRKDRKVMLSPDLLDLLRDYW--C----EARPE 54

Query: 227 LPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
             LF G  +  P++P    R     +R  G+    T HTLRHSFATHLL  G D+R IQ 
Sbjct: 55  GWLFPGKPKINPISPRQLNRAFTSAKRMAGINKPATLHTLRHSFATHLLEAGTDVRVIQV 114

Query: 286 ILGHFRLSTTQIYTNVNSK 304
           +LGH +L+ T  YT V +K
Sbjct: 115 LLGHAKLTITAQYTKVATK 133


>gi|68637890|emb|CAI36095.1| XerD-like site-specific recombinase [Pseudomonas syringae pv.
           phaseolicola]
          Length = 319

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 128/301 (42%), Gaps = 53/301 (17%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W  NL+  R     T ++Y+ D   F  F+   + +       RQ++ + + A+ +    
Sbjct: 32  WFANLDNPR-----TRRAYQNDLTDFSSFIGLASADDF-----RQVTRSHVLAWRADLEH 81

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVD 139
           + +   +++R L+ + S   +L       E+N +   N       PR   NE +   L D
Sbjct: 82  RGLAGATIRRKLAALASLFDHL------LENNAVAGGNPVHGVKRPRIETNEGKTPALGD 135

Query: 140 NV---LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194
           +    LL           R+ AIL +L   GLR  EA  L   ++ + +    LR+ GKG
Sbjct: 136 HQAKQLLEAPDTETLKGLRDRAILAVLLYHGLRREEAAQLKTGDLQERRGIKHLRVHGKG 195

Query: 195 DKIRIVPLLPSVRKAILEYY------DLCPFDLNLNIQLPLFRGIRGKPLNPG------- 241
            K+R +PL P   + I  Y       D  P         PLFR +RG     G       
Sbjct: 196 SKVRFLPLHPVAAERIYAYLEQDVERDTAPG--------PLFRSLRGTTTGAGITANGIY 247

Query: 242 -VFQRYIRQ---LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
            V + Y ++   +  +LG+      H LR + AT+ L +  D+  +Q  LGH  +STT++
Sbjct: 248 TVVEAYAKKAGIVVEHLGV------HGLRATAATNALEHDADIAKVQMWLGHANISTTRL 301

Query: 298 Y 298
           Y
Sbjct: 302 Y 302


>gi|319942072|ref|ZP_08016391.1| hypothetical protein HMPREF9464_01610 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804456|gb|EFW01334.1| hypothetical protein HMPREF9464_01610 [Sutterella wadsworthensis
           3_1_45B]
          Length = 331

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 104/211 (49%), Gaps = 8/211 (3%)

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLK-KSNSLPRALNEKQALTLVDNVLLHTSHET 149
           +L G+      L++  +TT + I  ++ L+       RAL   ++  L+  V      +T
Sbjct: 109 ALRGVAETAWRLRQIDLTTYAEIKAVKQLRVHREPTGRALQADESQKLLAAV----DEDT 164

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
                R+ A++ LL GCGLR +E  +L  +N+     TLR+ GKG+K R V L P V + 
Sbjct: 165 GPKAVRDRALIALLLGCGLRRAEVTTLRMENLERSSGTLRVIGKGNKERKVFLTPEVAQK 224

Query: 210 ILEYYDLCPFDLN--LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +  + DL   +          + + I   PL+P    R ++  +    +   TT H LR 
Sbjct: 225 VNAWLDLRGTEPGWLFGRLTKVGQLILTNPLDPASIGRVVKHAQDLAKIAPITT-HDLRR 283

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +FAT LL+   D+ ++++++GH  +STT  Y
Sbjct: 284 TFATRLLAKNVDIVAVKNLMGHANVSTTAKY 314


>gi|294053866|ref|YP_003547524.1| integron integrase [Coraliomargarita akajimensis DSM 45221]
 gi|293613199|gb|ADE53354.1| integron integrase [Coraliomargarita akajimensis DSM 45221]
          Length = 448

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 87/183 (47%), Gaps = 40/183 (21%)

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPL----LPSVRK--AILEYY-- 214
           Y  GLR+SE + L  Q++   +  + I+ GKG+K RIVPL     P +R    ++E +  
Sbjct: 255 YASGLRVSELVRLRIQDLDFSRGQIVIRSGKGNKDRIVPLSEKAAPGLRTHLELVETFFR 314

Query: 215 -DLCPFDLNLNIQLP---------LFRGIRGKPLNPG--------------------VFQ 244
            D    DL   + LP           R  R + + P                      +Q
Sbjct: 315 EDQERTDLA-GVYLPEALARRHSNAGRDWRWQWVWPSRKVSVDPRSGKLRRHHVLDRAYQ 373

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R IR+     G+    T+H LRHSFATH+L NG D+R++Q +LGH R+ TTQ Y +V  K
Sbjct: 374 RTIREAALAAGITKRVTSHALRHSFATHMLENGTDIRTVQDLLGHRRIETTQTYLHVMQK 433

Query: 305 NGG 307
            G 
Sbjct: 434 LGA 436


>gi|242237763|ref|YP_002985944.1| site-specific tyrosine recombinase XerC [Dickeya dadantii Ech703]
 gi|242239427|ref|YP_002987608.1| site-specific tyrosine recombinase XerC [Dickeya dadantii Ech703]
 gi|242129820|gb|ACS84122.1| integrase family protein [Dickeya dadantii Ech703]
 gi|242131484|gb|ACS85786.1| integrase family protein [Dickeya dadantii Ech703]
          Length = 366

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 7/169 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213
           R+ A++ LL+  G+R  E   L   ++   +  + I QGKG K R++P+     + +  Y
Sbjct: 168 RDRALMELLWSTGIRRGEVAVLEVYSVDASRHIVTIVQGKGKKDRVIPVGQRALRWLTYY 227

Query: 214 YDLCPFDLNLNIQLP-LFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
                  L +N   P LF  + G + L P      +    +  G+    + H  RH+ AT
Sbjct: 228 VQAVRPQLLVNPHCPALFVALDGVEGLTPNGITNLVSHYIKASGIAKWGSCHLFRHAMAT 287

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
            +L NG DLR IQ++LGH  + +TQIYT V+ +     +  ++  THP+
Sbjct: 288 QMLENGADLRWIQAMLGHASVESTQIYTQVSIRA----LQAVHASTHPA 332


>gi|283479882|emb|CAY75798.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 351

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 139/319 (43%), Gaps = 25/319 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++WL +L +  G S  T+Q Y    R FL +      E   I    Q+S   + A+    
Sbjct: 26  ESWLAHLVVA-GRSPRTVQGYRERVRAFLXWC-----EPRGITYAPQVSLAVLEAYQRWL 79

Query: 79  RTQKIGD------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNE 131
           +  +  D       S    L+ I+   ++L +R +   +    +   K+   LP +  +E
Sbjct: 80  QGYRRADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFSE 139

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            +   ++ ++   T         RN AIL LL+  G+R SE   L   ++   +  + ++
Sbjct: 140 AETRRVLQSLDAGTP-----PGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVR 194

Query: 192 -GKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-R 248
            GKG K  +VP+  +    +  Y  D+ P          LF   +G  L  G       R
Sbjct: 195 RGKGGKDXVVPVGHAALMWLGRYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGR 254

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            +R    L  +   H  RH  AT +L NG D R IQ+ILGH +L TTQIYT V   +   
Sbjct: 255 AIREGAHLKKAGACHIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGH--- 311

Query: 309 WMMEIYDQTHPSITQKDKK 327
            + +++  THP+  ++ +K
Sbjct: 312 -LQKVHAHTHPAEKRRTEK 329


>gi|291534339|emb|CBL07451.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
          Length = 317

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 133/286 (46%), Gaps = 32/286 (11%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           ++N   +R L + T+Q Y  D   FL ++          + +  L+  +  +F++ +R +
Sbjct: 9   IRNEAEKRNLRERTIQLYCSDVSYFLRWIG---------KNVSDLTLEDAESFLTAKRLE 59

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
               RS   + +  +S +K+L K+ + T  +   +  +K+  +LP  L+  +   ++D  
Sbjct: 60  ---GRS-PETHNHYRSAIKFLYKKVLKTVWDDDTVPAMKRERNLPAVLSRDEINAIIDAT 115

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV 200
                      + ++ AI+  +Y  GLR+SE + L   +I     T+ + + KG   R  
Sbjct: 116 P----------NLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGRIDRYT 165

Query: 201 PLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            L       + EY+  C  P D    I  P      G  L+     ++ ++  +  G+  
Sbjct: 166 ILSQKNLDLLTEYWYKCGRPKD----ILFP--SSWSGGYLDIASVNQFFKKSAKLAGINR 219

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             ++H  RHSFA+HL  +G D++ IQS+LGH    +T +Y +V++K
Sbjct: 220 HVSSHACRHSFASHLFESGTDIKYIQSLLGHVDPRSTDVYLHVSNK 265


>gi|209809323|ref|YP_002264861.1| site-specific recombinase IntIA [Aliivibrio salmonicida LFI1238]
 gi|208010885|emb|CAQ81288.1| site-specific recombinase IntIA [Aliivibrio salmonicida LFI1238]
          Length = 327

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 132/310 (42%), Gaps = 59/310 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RGL+  T + Y      F+ F  + ++E+I    I   SY E          Q +   + 
Sbjct: 25  RGLAYNTEKHYIYWISSFIRFKNYTSKEEIEAFDIP--SYLEHLVI-----KQNVSPNTQ 77

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           K +L+     L +L +  +    + L+ +  KK+  LP     K+A+ ++ N+    +H 
Sbjct: 78  KTALNA----LVFLCREFLQQSVDSLDFKRSKKATKLPTVFTHKEAMDVIHNL----NHP 129

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVR 207
            K I         L+YG GLRI+EAL L   +I  D+  + I+ GKG+K R   L  SV 
Sbjct: 130 IKLIAQ-------LMYGSGLRINEALRLRVNDIDLDKKIITIKSGKGNKDRTSILPESVV 182

Query: 208 KA-------ILEYYDLCPFDLNLNIQL-----------------------------PLFR 231
            A       + + + L   + N  + +                             P   
Sbjct: 183 DAIKTQLAFVKQQHKLDAINGNDEVYMSYALAEKYPTQAKSYGWQYVFPSPQISKDPRSE 242

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
             R   L     Q  +++    +G+    + HT RHSFAT +L  G DLR+IQ +LGH  
Sbjct: 243 KHRRHHLLDRTIQSAVKKSILKVGIDKKASCHTFRHSFATRVLERGADLRTIQELLGHSD 302

Query: 292 LSTTQIYTNV 301
           + TTQIYT+V
Sbjct: 303 IKTTQIYTHV 312


>gi|148244009|ref|YP_001220247.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|146400572|gb|ABQ29105.1| phage integrase family protein [Acidiphilium cryptum JF-5]
          Length = 330

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 137/317 (43%), Gaps = 32/317 (10%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M    LP ++       ++ +   L ++   S+ T+  Y  DT + L+  A     K  +
Sbjct: 1   MSAAALPALI-------QRFFTDRLCVQMEASRNTVAGYR-DTFRLLLRYASARHVKPPV 52

Query: 61  Q-TIRQLSYTEIRAFISKRRTQKIGD-RSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
           + TI  +    I  F+    T +    RS    L+ I+SF +Y+        S+   +  
Sbjct: 53  KLTIEDIDADLIADFLVHTETARGNSARSRNTRLAAIRSFFRYVAM------SDPTWLLQ 106

Query: 119 LKKSNSLPRALNEKQALTLVDN----VLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            ++  ++P     K+ +T +D+     LL     T W   R+ A+L L    GLR SE +
Sbjct: 107 CQRILAMPNKRYVKRTVTFLDSDEIAALLAAPDRTTWAGRRDHALLLLAVQTGLRASELV 166

Query: 175 SLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
            L   ++ ++  + +R  GKG K R  PL     K +  +        + N   PLF  I
Sbjct: 167 GLQCGDVVLESGAHIRCMGKGRKERATPLRRETVKLLAAW-----IGDDKNKSKPLFPSI 221

Query: 234 RGKPLNPGVFQRYIRQ--LRRYLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           RG+ L+    +  +R+  L   L  P       T HTLRHS A  LL +G D   I   L
Sbjct: 222 RGERLSRDALEHLVRKHCLTASLTCPSIGSKRVTPHTLRHSTAMDLLHHGVDPAVIALWL 281

Query: 288 GHFRLSTTQIYTNVNSK 304
           GH  + TTQIY + + +
Sbjct: 282 GHENVETTQIYIHADMR 298


>gi|126668746|ref|ZP_01739695.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126669114|ref|ZP_01740043.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126626410|gb|EAZ97078.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126626783|gb|EAZ97431.1| integrase/recombinase [Marinobacter sp. ELB17]
          Length = 338

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 132/302 (43%), Gaps = 37/302 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK- 77
           +++LQ L   RG S  T+++Y    R   I+LA   +  +    +  L    + AF+++ 
Sbjct: 18  RDYLQRL---RGASAHTVRAYRDTLRLLFIYLADTKDSTVANLRLNDLHVDAVAAFLTQL 74

Query: 78  --RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN---ILNMRNLKKSNSLPRALNEK 132
              R   I  R+ +R+   I+SF K+L +  +        IL +   K   +L   L   
Sbjct: 75  ESDRANSIATRNCRRA--AIRSFCKHLIRVDLPHAEQYQRILALPAKKCQQNLATYLEAA 132

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQ 191
           +   ++D     T      +  R+  +L  LY  G RISEAL++   ++ +     +R+ 
Sbjct: 133 EVHAILDQPDCRTV-----LGQRDYGLLLFLYNTGARISEALTVCCADLHLTPPRQVRLH 187

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN----PGVFQRYI 247
           GKG K R+ PL     +A+L      P   +      +F   +G+PL       + Q+Y+
Sbjct: 188 GKGKKDRLCPLWRDTAQALLRL----PTVRDGAPGAFVFVNRQGQPLTRDGAAYLLQKYV 243

Query: 248 RQLRRYLGLPLSTT-------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                   +P + T        H LRHS A  LL +G D+  I+  LGH  ++TT  Y  
Sbjct: 244 -----VAAIPTAPTLQRRKITPHVLRHSCAVALLQSGVDVTVIRDYLGHASIATTSRYLT 298

Query: 301 VN 302
            N
Sbjct: 299 TN 300


>gi|55980943|ref|YP_144240.1| integrase/recombinase [Thermus thermophilus HB8]
 gi|55772356|dbj|BAD70797.1| integrase/recombinase [Thermus thermophilus HB8]
          Length = 313

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 138/297 (46%), Gaps = 46/297 (15%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + + L +ERG S   ++ Y  D      +  F   E ++       S   +RA + +   
Sbjct: 34  YAEYLLLERGYSPRGVRRYLQD---LAFWFRFLEAEGLSP------SPEAVRALLLR--- 81

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKKSNSLPRALNEKQALTLVD 139
           ++   R ++  L+ ++S+ +YL++ K    S+    +   K    LP     ++    ++
Sbjct: 82  ERWAPRRVQGFLAALRSYYRYLREVKGEAASDPTEGIGRPKAGRRLPLHPGPEELKRFLE 141

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKGDK 196
                   E   ++A    +   LYG GLRISEALSL  +N++ +  +   +R+ GKG+K
Sbjct: 142 A--FREEKEAALLEA----LARFLYGTGLRISEALSLKGRNVVLEGGSPVAVRVVGKGNK 195

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNI----------QLPLFRGIRGKPLNPGVFQRY 246
            R+VPL  + R+ +LE   L     N+NI           +P  R +  K          
Sbjct: 196 ERLVPLSKTARE-VLE--ALGRPQGNVNIFTFSQGRRKGHVPSARWVEAK---------- 242

Query: 247 IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            R+     GL P   T H LRH++AT L+  G +L +++ +LGH  ++TTQIY + +
Sbjct: 243 FREAALRAGLDPRRFTPHKLRHAYATLLVERGVELDAVKDLLGHESIATTQIYLHAS 299


>gi|217961112|ref|YP_002339680.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus cereus AH187]
 gi|229140330|ref|ZP_04268885.1| hypothetical protein bcere0013_34290 [Bacillus cereus BDRD-ST26]
 gi|217063254|gb|ACJ77504.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus cereus AH187]
 gi|228642891|gb|EEK99167.1| hypothetical protein bcere0013_34290 [Bacillus cereus BDRD-ST26]
          Length = 304

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 133/275 (48%), Gaps = 14/275 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           + +G +  T+++   + +Q   FL    +EK  I  +  ++   ++ ++  +  + +  +
Sbjct: 15  LAKGFTPKTMKNKRQEMKQLKRFL---MDEK-GISELEAINTLHLKQYVRTKYKEGLQPQ 70

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S+      +++F  + +K +   E NI     L K   +P+ L +   +  V  ++   S
Sbjct: 71  SIVSMFKLVRAFFSWCQKEEYLKE-NIAKKVELPK---VPKKLLKGFTIQEVSAMIDAFS 126

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
           ++  +I+ARN AI+ +L  CGLR  E   L  QN+   ++T+ + GKG+K RI+ + P +
Sbjct: 127 YKN-YIEARNKAIVAMLSDCGLRAMEIRGLLTQNV--KETTILVNGKGNKERIMFISPPL 183

Query: 207 RKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAH 263
           +K ++ Y  L    L   I      F      PL+  G++       +R     +  + H
Sbjct: 184 KKILIRYERLRKQYLKDKIVKTDNYFLSYTADPLSHMGIYNVIKEAGKRVEVEEVRCSPH 243

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           T RH FA   + NG D+ ++  +LGH  +STTQ Y
Sbjct: 244 TFRHFFAVQCILNGIDIFTLSKLLGHSDVSTTQRY 278


>gi|163736010|ref|ZP_02143436.1| tyrosine recombinase [Roseobacter litoralis Och 149]
 gi|161390735|gb|EDQ15078.1| tyrosine recombinase [Roseobacter litoralis Och 149]
          Length = 153

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 77/137 (56%), Gaps = 3/137 (2%)

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF-DLNLNIQ 226
           +RISE  +L  +++  D   + +QGKG K RIV  +P+ R+   ++   C     + +I 
Sbjct: 1   MRISELTNLKVRDVSPDSGQILVQGKGSKERIV-FVPN-RELQEKFQRYCQARSDDGSIT 58

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
            PLF    G+ L    F++ +R L + LG+    T H  RHS AT L+  G D+R +Q++
Sbjct: 59  SPLFLNTEGRRLRSATFRKRLRTLSKRLGIEPHLTPHRFRHSAATLLIEEGIDIRIVQAL 118

Query: 287 LGHFRLSTTQIYTNVNS 303
           LGH  L TT+IY  V++
Sbjct: 119 LGHANLKTTKIYVRVSN 135


>gi|54308887|ref|YP_129907.1| integrase-recombinase [Photobacterium profundum SS9]
 gi|46913317|emb|CAG20105.1| hypothetical integrase-recombinase [Photobacterium profundum SS9]
          Length = 180

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 88/165 (53%), Gaps = 21/165 (12%)

Query: 159 ILYL-LYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYY 214
           I +L LY  GLR+ E LSLT  +I  DQ T+++    GKG K R+VP+      A+  ++
Sbjct: 13  IFFLTLYTMGLRLGEGLSLTVHDI--DQHTMQVHIRDGKGGKDRLVPVPQRTLNALRAHW 70

Query: 215 DLCPFDLNLNIQLP--LFRGIRG----KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
                   L  + P  +F G +G     P++ G  Q+ ++ + +  G+    + H+LRH 
Sbjct: 71  --------LTHRHPRLIFPG-KGCNTDNPMDRGGVQKAMKLVLKDCGINKPISPHSLRHC 121

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           FATHLL  G DLRS+Q +LGH  L+TT  YT +      D  + I
Sbjct: 122 FATHLLEQGLDLRSLQILLGHASLNTTARYTRMTQIKQRDAALAI 166


>gi|12831423|gb|AAK02079.1| site-specific recombinase IntIA [Aliivibrio fischeri]
          Length = 327

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 107/226 (47%), Gaps = 50/226 (22%)

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
           L  +  KK+  LP   +  +A+++++ +    +H TK I         L+YG GLRI+EA
Sbjct: 99  LEFKRSKKATKLPTVFSHSEAISVINEL----NHPTKLI-------AQLMYGSGLRINEA 147

Query: 174 LSLTPQNIMDDQSTLRIQ-GKGDKIR-------IVPLLPSVRKAILEYYDLCPFDLNLNI 225
           L L   +I     T+ I+ GKG+K R       I+P L +    + + + +   + +  +
Sbjct: 148 LRLRVDDIDLIHKTITIRNGKGNKDRTTVLPDSIIPELKTQLAFVKQQHKMDAINGDDEV 207

Query: 226 QLP------------------LF--RGIRGKP----------LNPGVFQRYIRQLRRYLG 255
            LP                  +F  + I   P          L+  V Q+ +    + L 
Sbjct: 208 YLPNAIAKKYPHRAKSYGWQYVFPSKQISKDPRSGQRRRHHMLDRSV-QKQVTNAIKKLE 266

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +    ++HT RHSFAT +L  GGDLR+IQ +LGH  + TTQIYT+V
Sbjct: 267 IDKKASSHTFRHSFATRILERGGDLRTIQELLGHSDIKTTQIYTHV 312


>gi|282852166|ref|ZP_06261522.1| site-specific recombinase, phage integrase family [Lactobacillus
           gasseri 224-1]
 gi|282556688|gb|EFB62294.1| site-specific recombinase, phage integrase family [Lactobacillus
           gasseri 224-1]
          Length = 139

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/125 (39%), Positives = 68/125 (54%), Gaps = 4/125 (3%)

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRGKPLNP 240
           D   + + GKG+K R VP       A+ EY D   L     N ++   +F   RG+ L  
Sbjct: 4   DLKIILVHGKGNKDRYVPFGKDALDALREYRDDVRLALLGQNEDLGY-VFLNNRGQKLTG 62

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              +  ++Q+    G+      H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+
Sbjct: 63  RGIEYIMQQVFIKAGVGGKVHPHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTH 122

Query: 301 VNSKN 305
           V  K+
Sbjct: 123 VTMKH 127


>gi|313906097|ref|ZP_07839448.1| integrase family protein [Eubacterium cellulosolvens 6]
 gi|313469086|gb|EFR64437.1| integrase family protein [Eubacterium cellulosolvens 6]
          Length = 281

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 51  AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE 110
           A Y EE+  + +    + T + +++     +K    ++ RS++ ++SF +YL +     +
Sbjct: 35  AAYLEEQ-RVSSFESATETNLYSYMLYLEREKKSAATVSRSIASLRSFYQYLLREHKIDK 93

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
               +++  +    +P  L   +A     + LL      K    R+ A+L LLY  G+R+
Sbjct: 94  DPSEHLKAPRVEKKVPEILTIDEA-----DRLLAQPDRKKNKGLRDRAMLQLLYCTGIRV 148

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-L 229
           SE + +  +++  D   +  + +  + RI+P+    R  + EY +     L    +   L
Sbjct: 149 SELVHMKMEDVNLDLGYITCR-ENSRERIIPMTQGTRIILDEYLESARDSLLKGKESEYL 207

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F    G  ++   F + ++   +  G+    T HT+RHSFA H L  G D+ S+Q +LGH
Sbjct: 208 FCNCSGGEMSRQGFWKVLKVYAQDAGIKKDITPHTMRHSFAAHQLQKGTDIHSVQRMLGH 267

Query: 290 FRLSTTQIYTNV 301
             ++T Q+Y ++
Sbjct: 268 AGVTTMQMYKDL 279


>gi|254885282|ref|ZP_05257992.1| phage integrase [Bacteroides sp. 4_3_47FAA]
 gi|254838075|gb|EET18384.1| phage integrase [Bacteroides sp. 4_3_47FAA]
          Length = 343

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 132/296 (44%), Gaps = 30/296 (10%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTE---EKITIQTI-RQLSYTEIRAFISKRRT 80
           L + R +S  T  SY    R  + F++  T    +K+ I  I +++    +  F+ K R 
Sbjct: 24  LTVTRNMSHNTQMSYRDTFRMLVTFVSGKTNIAIDKLNISDISKEMVLLFLDEFVEKMRN 83

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA---LNEKQALTL 137
             +  R+  + L+ IKSF K++  +          +R +       R    ++ ++   L
Sbjct: 84  ASVSSRN--QRLTAIKSFAKFIAWKCPDYIDWCHQIRQIPSKKITQRQITYMDREEMEAL 141

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ----STLRIQGK 193
            +  L + +H+      R+  I+ L+Y  G R+SE +S+   +I+  +     T+ + GK
Sbjct: 142 TEAPLSNRNHK---YGKRDHIIILLMYNTGARVSEVISIHVGDIVMPKKRGMGTVTLHGK 198

Query: 194 GDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G   R  PL P       E++DL  P          LF     KP+        I++   
Sbjct: 199 GRHERTCPLWP-------EFWDLLKPLIEGRKPDEFLFLNRFNKPMTRYCIYTLIKKYAD 251

Query: 253 YLGLPLST------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           Y+            + HT+RH+ ATHLL++G D+ ++++ LGH  + TT IY  ++
Sbjct: 252 YISRDYPNLRNKRPSPHTIRHTTATHLLNSGTDINTVRNWLGHASIDTTNIYAEIS 307


>gi|229162527|ref|ZP_04290488.1| hypothetical protein bcere0009_32990 [Bacillus cereus R309803]
 gi|228621006|gb|EEK77871.1| hypothetical protein bcere0009_32990 [Bacillus cereus R309803]
          Length = 304

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 133/275 (48%), Gaps = 14/275 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           + +G +  T+++   + +Q   FL    +EK  I  +  ++   ++ ++  +  + +  +
Sbjct: 15  LAKGFTPKTMKNKRQEMKQLKRFL---MDEK-GISELEDINPLHLKQYVRTKHKEGLQPQ 70

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S+      +++F  + +K +   + NI     L K   +P+ L +   +  V  ++   S
Sbjct: 71  SIVSMFKMVRAFFSWCQKEEYL-KGNIAKKVELPK---VPKKLLKGFTIQEVSAMIDAFS 126

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
           ++  +I+ARN AI+ +L  CGLR  E   L  QN+   ++T+ + GKG+K RI+ + P +
Sbjct: 127 YKN-YIEARNKAIVAMLSDCGLRAMEVRGLLTQNV--KETTILVNGKGNKERIMFISPPL 183

Query: 207 RKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAH 263
           +K ++ Y  L    L   I      F      PL+  G++       +R     +  + H
Sbjct: 184 KKILIRYERLRKQYLKDKIVKTDNYFLSYTADPLSHMGIYNVIKEAGKRVEVEEVRCSPH 243

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           T RH FA   + NG D+ ++  +LGH  +STTQ Y
Sbjct: 244 TFRHFFAVQCILNGIDIFTLSKLLGHSDVSTTQRY 278


>gi|32472354|ref|NP_865348.1| integrase/recombinase Y4QK [Rhodopirellula baltica SH 1]
 gi|32443590|emb|CAD73032.1| probable integrase/recombinase Y4QK [Rhodopirellula baltica SH 1]
          Length = 450

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 84/180 (46%), Gaps = 37/180 (20%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVP----LLPSVRKAI--- 210
           I  LLYGCG+RISE   L  ++I      + I Q KG+K R+VP    L+  +R+ +   
Sbjct: 242 IAKLLYGCGMRISETHRLRVKDIDFANKQIEIRQSKGNKSRLVPMPDDLIEPLRRFVKTR 301

Query: 211 --LEYYDLC--------PFDLN---------LNIQL----------PLFRGIRGKPLNPG 241
             L  +DL         P+ L+         L  Q           P    I    L   
Sbjct: 302 DALHEHDLANGTASVYLPYALDRKYPSAHRELKWQYLFASHRLSRDPRTGRIHRHHLRAT 361

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            F  ++R+     G+    T+HT RH FATHLL  G D+R IQ +LGH  + TT+IYT+V
Sbjct: 362 TFPTHLRRAVEQAGILKHVTSHTFRHCFATHLLWQGTDIRQIQQLLGHSDVKTTEIYTHV 421


>gi|15643727|ref|NP_228775.1| integrase-recombinase protein [Thermotoga maritima MSB8]
 gi|222100583|ref|YP_002535151.1| Integrase-recombinase protein [Thermotoga neapolitana DSM 4359]
 gi|4981505|gb|AAD36046.1|AE001759_10 integrase-recombinase protein [Thermotoga maritima MSB8]
 gi|221572973|gb|ACM23785.1| Integrase-recombinase protein [Thermotoga neapolitana DSM 4359]
          Length = 253

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 132/289 (45%), Gaps = 52/289 (17%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L++ +  S+ TL  Y    R+F  F      E IT +T ++   T     ISK   
Sbjct: 4   YLEYLKVVKKRSERTLYQYRSILREFTRF------EPITPETWKEYLNT-----ISKN-- 50

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNILNMRNLKKSNSLPRA--LNE-KQALT 136
                 + +  L  +K++L +   R +   E    N     +   LP+A  L+E ++ + 
Sbjct: 51  ---APATQRNKLVVVKNYLNWRADRGLLNAEERFWNEAEPPRHTVLPKAIELDEVRRIIE 107

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGD 195
             DN L               AI  +L   G+R+SE ++L+  +I +++ + +RI+GKG+
Sbjct: 108 ACDNPLYR-------------AIFKVLANTGMRVSEIVNLSVHDISVNETARIRIKGKGN 154

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RI+    +V K ++E       +     + P  R I          QR +++  R  G
Sbjct: 155 KERII----NVSKELVEEL----MNSGFFEKKPSVRSI----------QRAVKRYARKAG 196

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +    T H  RHSFA  L+  G  L  IQ++LGH  +STT IY  + S+
Sbjct: 197 IKKKVTPHIFRHSFAVALIERGVPLNKIQALLGHANISTTSIYLKIASE 245


>gi|268609724|ref|ZP_06143451.1| phage-specific recombinase/integrase XerD [Ruminococcus
           flavefaciens FD-1]
          Length = 342

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 142/298 (47%), Gaps = 36/298 (12%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEK------ITIQTIRQLSYTEIRAFISKRRTQ 81
           ++ LS  T+++Y      F + L +  EEK      + ++ I +   +    ++ + R  
Sbjct: 25  QKNLSPNTIRAY---ADAFKLLLIYCEEEKGIKSDRLKLENIDRELVSGFLDWLEEIRGC 81

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL------KKSNSLPRALNEKQAL 135
           K   R+  + L  + SF +Y++K    +  N+ N++++      K   ++   L EKQ  
Sbjct: 82  KTTTRN--QRLIALHSFCRYVQK---ISPENMDNLQSVIQIDYKKSKKAIVPYLTEKQM- 135

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKG 194
                +LL       W   R+  +L +LY  G R+ E   L  +++ ++  + + + GKG
Sbjct: 136 ----KLLLAQPDGNTWQLFRDKVMLAVLYDTGARVQELCDLRIKDVRLESPAVITLTGKG 191

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLN----PGVFQRYI 247
           +K+R VP++   +K +L+ Y L     N  I     PLF   RG+ L+      +  +Y+
Sbjct: 192 NKVRQVPIMSGTQK-LLKIY-LEKHKGNAGISRGDNPLFVNQRGQKLSRWGVSHIIDKYV 249

Query: 248 RQLR-RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              + + L +    TAH  RHS A H++  G +L  I+  LGH   +TT+IY  ++++
Sbjct: 250 DMAKEKGLDVDFPITAHVFRHSKAVHMVHAGINLIYIRDFLGHVDWATTEIYAKIDTE 307


>gi|325983789|ref|YP_004296190.1| integrase family protein [Nitrosomonas sp. AL212]
 gi|325533308|gb|ADZ28028.1| integrase family protein [Nitrosomonas sp. AL212]
          Length = 316

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 123/290 (42%), Gaps = 31/290 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W  NL      +K T ++YE   + F+ F      E+      R ++   I A+      
Sbjct: 29  WFANLG-----NKATRRAYENALKDFMNFTGIQNPEEF-----RVVTRAHIIAWRDDLVN 78

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN--LKKSNSLPRALNEKQALTLV 138
           + +   S++  LS + S  +YL +R   T + +  ++   ++       A+ + QA  L 
Sbjct: 79  RSLSSMSIRHRLSALSSLFEYLCERNTVTHNPVKGVKRPAVESYEGKTPAIGDHQAREL- 137

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ---STLRIQGKGD 195
               L     +     R+ AIL  L    LR  E   L  ++   ++     ++I GKG 
Sbjct: 138 ----LEVPDGSSLKGKRDRAILATLLYHALRRDELCRLKVKDFKQERRGVPHIKISGKGG 193

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-------KPLNPGVFQRYIR 248
           K R VPL P+    I +Y D    D      L  FR +         KP+ P    + ++
Sbjct: 194 KTRYVPLHPAASGLIHDYLDAAGHDHEETGAL--FRSVSNNRIKESQKPITPDGVYKLVQ 251

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +    LG  +   AH+LR + AT+ L +  D+  +Q  LGH  ++TT+IY
Sbjct: 252 KYSEKLGFKIG--AHSLRATAATNALDHQADIAKVQEWLGHANIATTRIY 299


>gi|186474623|ref|YP_001863594.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198582|gb|ACC76544.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 343

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 139/307 (45%), Gaps = 32/307 (10%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR- 72
           LL+  Q++L  L   RG+S  T++SY       L F A  +   I    +  L+   ++ 
Sbjct: 13  LLRFFQDYLPTL---RGVSVHTIRSYRDAVVLLLRFTARESRCPIEALDLSDLNADHVKR 69

Query: 73  --AFISKRRTQKIGDRSLKRSLSGIKSFLKYL---KKRKITTESNILNMRNLKKSNSLPR 127
              F+   R   I  R+ +  L+ I +F +++       +     +L +   + +   P 
Sbjct: 70  FLKFLESERGNSIATRNAR--LAAIHAFARFVIAEHPEHLAPFQQVLGIPFKRGAREAPI 127

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQS 186
              E   +      LL T  +++    R+ A+  L++  G R+ E L+L   ++ +D   
Sbjct: 128 EYLETAEI----ETLLTTIDQSRPAGQRDFALFALMFNTGARVQEILNLRICDLRLDPPP 183

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQR 245
            +R++GKG+K+R+ P+ P   + + E     P     + +LP+F   RG  ++  GV  R
Sbjct: 184 QVRLRGKGNKVRVCPIWPRTAQLLRELIRTRPLVAQGSAELPVFVNCRGTQMSRFGV--R 241

Query: 246 YIRQLRRYLGLPLSTT----------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           Y+  LR+Y+ L  ST            H+LRH+ A  LL  G D  +I   LGH  L+TT
Sbjct: 242 YL--LRKYM-LIASTRNPTLAHKEIHPHSLRHTTAIQLLKAGVDFATISQWLGHASLNTT 298

Query: 296 QIYTNVN 302
             Y   +
Sbjct: 299 MRYARAD 305


>gi|323183907|gb|EFZ69298.1| integrase [Escherichia coli 1357]
          Length = 321

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 104/237 (43%), Gaps = 31/237 (13%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSN 123
           Q++ + I  + + RR+Q I   S+ R L+ I   F   ++      E  I   + LK+  
Sbjct: 88  QITKSLISQYCATRRSQGIKPSSINRDLTCISGMFTALIEAELFFGEHPIRGTKRLKEEK 147

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
                L +++   L+             +D  N  I  L    G R  EA  L  +NI+ 
Sbjct: 148 PDTGYLTQEEIALLLAA-----------LDGDNKKIAILCLSTGARWGEAARLKAENIIH 196

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           ++ T  ++ K +K R VP+  +V K I +                  RG      +   F
Sbjct: 197 NRVTF-VKTKTNKPRTVPISEAVAKMIADNK----------------RGFLFPDADYPRF 239

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +R ++ ++    LP+    H LRHSFATH + NGG + ++Q ILGH R+  T +Y +
Sbjct: 240 RRTMKAIKP--DLPMGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAH 294


>gi|332140068|ref|YP_004425806.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype']
 gi|332143134|ref|YP_004428872.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550090|gb|AEA96808.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327553156|gb|AEA99874.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 322

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 132/314 (42%), Gaps = 71/314 (22%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           +K T+Q+Y      ++ F  F        Q  + L    + A+++   T++   RS + +
Sbjct: 19  AKRTIQTYINWISDYIRFHKF--------QHPKDLDVLHVEAYLTHLSTKRKNARSTQAT 70

Query: 92  LSGIKSFL--KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
                 FL  KYL++  + ++ N +     +K   LP  L + +   L+  V  H     
Sbjct: 71  ALNALVFLYNKYLEQ-PLPSDMNFVGSGRERK---LPVVLTQLEVKALLGRVPTH----- 121

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV----PLLP 204
                 +   + LLYG GLR+ E + L   +I  D   +RI  GKG K R+V     L+P
Sbjct: 122 ------HYLAVALLYGSGLRLMECVRLRTGDIDFDYKCVRIWFGKGGKHRVVTLSESLIP 175

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRG-------------------------------- 232
            ++  I E   L   DL     +P F G                                
Sbjct: 176 LLKNHISESEKLLQRDL----MVPDFAGAWIPHGLRKKYQQRNKTLEWQYLFPASKLSID 231

Query: 233 -----IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                +R   ++    QR + +     G+    T HTLRHSFATHLL +G D+R++Q  L
Sbjct: 232 PESKLLRRHHIDEKQIQRAVSRASSDAGIIKHVTPHTLRHSFATHLLQSGADIRTVQDQL 291

Query: 288 GHFRLSTTQIYTNV 301
           GH  + TTQIYT++
Sbjct: 292 GHADVRTTQIYTHI 305


>gi|154175082|ref|YP_001408312.1| metallo-beta-lactamase family protein [Campylobacter curvus 525.92]
 gi|112803167|gb|EAU00511.1| metallo-beta-lactamase family protein [Campylobacter curvus 525.92]
          Length = 353

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 99/187 (52%), Gaps = 12/187 (6%)

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K   LP  ++E++    ++ +    + + K    RN  I+ ++   G+R+SEAL+L  ++
Sbjct: 160 KGQKLPEFMSEEEVKKFLNAI---DTADFKVNTNRNRLIIKIIVFTGIRVSEALNLKRKD 216

Query: 181 IMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILE-YYDLCPFDLNLNIQLPLFRGIRGKP 237
           I +D     +RI+GKG+K RIV     +++A++E   D+   +  +N +  LF   +G  
Sbjct: 217 ISEDGELYVIRIRGKGNKYRIVM----IKRALIEDLLDMIAINY-INKEGYLFINKKGTR 271

Query: 238 LNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           L      R + Q+    G+      AH LRH+FAT L     DL  +Q  LGH  L+T++
Sbjct: 272 LTQAYVSRIVEQILFRAGIRKEKNGAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSR 331

Query: 297 IYTNVNS 303
           IYT+ ++
Sbjct: 332 IYTHFDN 338


>gi|59713846|ref|YP_206621.1| XerC/CodV family integrase/recombinase [Vibrio fischeri ES114]
 gi|59482094|gb|AAW87733.1| integrase/recombinase (XerC/CodV family) [Vibrio fischeri ES114]
          Length = 327

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 107/226 (47%), Gaps = 50/226 (22%)

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
           L  +  KK+  LP      +A+++++ +    +H TK I         L+YG GLRI+EA
Sbjct: 99  LEFKRSKKATKLPTVFTHGEAISVINEL----NHPTKLI-------AQLMYGSGLRINEA 147

Query: 174 LSLTPQNIMDDQSTLRIQ-GKGDKIR-------IVPLLPSVRKAILEYYDLCPFDLNLNI 225
           L L   +I     T+ I+ GKG+K R       I+P L +  + + + + +   + +  +
Sbjct: 148 LRLRVDDIDLIHKTITIRNGKGNKDRTTVLPESIIPELKTQLEFVKQQHKMDAINGDDEV 207

Query: 226 QLP------------------LF--RGIRGKP----------LNPGVFQRYIRQLRRYLG 255
            LP                  +F  + I   P          L+  V Q+ +    + L 
Sbjct: 208 YLPNAIAKKYPHRAKSYGWQYVFPSKQISKDPRSGQHRRHHMLDRSV-QKQVTNAIKKLE 266

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +    ++HT RHSFAT +L  GGDLR+IQ +LGH  + TTQIYT+V
Sbjct: 267 IDKKASSHTFRHSFATRILERGGDLRTIQELLGHSDIKTTQIYTHV 312


>gi|291531147|emb|CBK96732.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 305

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 129/280 (46%), Gaps = 20/280 (7%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS----KRR 79
           N ++ R  SK TL  Y  +   F  +L     E   + ++   +Y     F+     KR 
Sbjct: 17  NEQLFRNNSKRTLIWYNENLSAFFNWLG----ENKNVDSLTVENYKSYCTFLQHDYVKRN 72

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTE-SNILNMRNLKKSNSLPRALNEKQALTLV 138
            Q +   S+   +  IK+F  Y  +  +  + S  L    ++K+  LP  L++ +  TLV
Sbjct: 73  GQPLKSSSVNSRVRAIKAFYNYCIEEDLLPDFSKKLKATKIRKTEKLP--LDDDEIHTLV 130

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                 ++     ++ RN   + L+   GLR  E ++L   N+   +  + + GKGDK R
Sbjct: 131 ------SAFGDSALEERNRCWVILMCDSGLRRGEIINLQIGNVHLARGFMIVTGKGDKQR 184

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            VPL    + ++  Y  +  +        P+F    G+       ++  ++L++  G+ L
Sbjct: 185 FVPLGELSKISLATY--IRKYRNEAKESEPVFVNRFGEKCTINTVKQVFQKLKKQTGI-L 241

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              AH LRH+FAT+ L +GGDL +++ ++GH  L  T +Y
Sbjct: 242 RLHAHLLRHTFATNYLVDGGDLETLRLLMGHSDLQVTMMY 281


>gi|89092929|ref|ZP_01165881.1| site-specific recombinase [Oceanospirillum sp. MED92]
 gi|89082954|gb|EAR62174.1| site-specific recombinase [Oceanospirillum sp. MED92]
          Length = 323

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 85/184 (46%), Gaps = 39/184 (21%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL---LPSVRKAILEYYDLC 217
           L+YG GLR+ EA  L  ++I  D+ ++ I +GKG K RI  L     S  K  + +  LC
Sbjct: 130 LMYGSGLRLMEACRLRIKDIDLDRLSIHIFEGKGKKQRITTLSEFCVSELKNQIAHARLC 189

Query: 218 --------------------------PFDLNLNIQLPLFR---------GIRGKPLNPGV 242
                                     PF+ +    LP  +          IR   L+   
Sbjct: 190 WQEDKLCHDWGGCYLPPALSRKYPNAPFEFSWQYLLPTKKRLVDERNDNAIRRHHLHERS 249

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            QR  ++     G+    T H+LRHSFATHLL  G D+R++Q  LGH  + TT+IYT+V 
Sbjct: 250 MQREFKRAVLKSGIAKQATCHSLRHSFATHLLERGADIRTVQEQLGHSDVRTTEIYTHVL 309

Query: 303 SKNG 306
           ++ G
Sbjct: 310 NRGG 313


>gi|325859510|ref|ZP_08172652.1| phage integrase, N-terminal SAM domain protein [Prevotella
           denticola CRIS 18C-A]
 gi|325482978|gb|EGC85969.1| phage integrase, N-terminal SAM domain protein [Prevotella
           denticola CRIS 18C-A]
          Length = 341

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 143/293 (48%), Gaps = 26/293 (8%)

Query: 28  ERGLSKLTLQSYE-CDTRQFLIFLAFYTE-EKITIQ--TIRQLSYTEIRAFISK-RRTQK 82
           E G++  T+++Y  C    F + L ++ E E I  Q  T++ ++   I +F++    T+K
Sbjct: 21  ECGVTNNTIKTYSYC----FTLLLEYFKEVELIRAQKLTLKHITKERIISFLNWLETTRK 76

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTES---NILNMRNLKKSNSLPRALNEKQALTLVD 139
               +    L  I +F KYL+ R +T  +   ++L+++  KK+          +A+    
Sbjct: 77  CSTNTRNARLGAIHAFFKYLQYRDVTGIAMWQDVLSIK-FKKTGVKQMPFLSVEAI---- 131

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIR 198
             LL   ++      R+  ++ LLY   +R+ E +  TP +I   +  T+R+ GKG+K+R
Sbjct: 132 KALLDLPNQKTKKGRRDFVLIGLLYDSAMRVQELIDSTPSDIRFGEIVTIRVIGKGNKVR 191

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNP----GVFQRYIRQLRRY 253
            +PL   V+   L+ Y L    L+ N +  PLF   R   L+      + ++Y + L++ 
Sbjct: 192 TIPL-TDVQANNLKQYMLENNMLDKNKLNNPLFSNGRDGKLSRMAVLKIVKKYFQILKQN 250

Query: 254 LGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +  P     H LRHS A HLL    +L  I+  LGH  ++TT++Y   + K
Sbjct: 251 TSIIVPDDIGCHALRHSKAIHLLEANVNLVWIRDFLGHSSVTTTEVYARASDK 303


>gi|303239112|ref|ZP_07325642.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302593450|gb|EFL63168.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 340

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 136/294 (46%), Gaps = 29/294 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTE------EKITIQTIRQLSYTEIRAFISKRRTQK 82
           + +S  T+ SY CDT  F +FL +  +       K+++  I+         ++   R   
Sbjct: 22  KNVSSNTISSY-CDT--FRLFLEYCRDTEGMKIHKMSLCDIKPELVASFLEWLENERKNS 78

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRK---ITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           I  R+ +  L+ I SF+++++ +    +     IL++   KK++  PR L +++   ++ 
Sbjct: 79  ISTRNQR--LAAIHSFVRFVQTQDPKLLLNFQKILDIPIKKKASKPPRHLTKEEVAVILR 136

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIR 198
              + T H       R++ IL +LY    R  E   L   ++ ++  + +RI GKG K R
Sbjct: 137 QPDILTLH-----GRRDATILCVLYDTAARAQELCDLRVADVRLEHPANVRITGKGRKTR 191

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQRYIRQLRRYL 254
           +VPLLP+  + +  Y              PLF    G  L       +  +Y++Q     
Sbjct: 192 VVPLLPATMQNLKNYLSENRLLDPEKNHCPLFPNREGNHLTRAGLRYILTKYVQQTEEN- 250

Query: 255 GLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY--TNVNSK 304
           G  +S   + H  RH+ A H+  +G +L  ++  LGH  +STT +Y  T++N K
Sbjct: 251 GDVISKRISPHVFRHTKAMHVYESGNNLIYVRDFLGHADISTTGVYARTSLNMK 304


>gi|56475445|ref|YP_157034.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|56311488|emb|CAI06133.1| phage-related integrase [Aromatoleum aromaticum EbN1]
          Length = 335

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 126/280 (45%), Gaps = 52/280 (18%)

Query: 65  QLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           ++   E+ AF+S   T + +   +  +++  +    K++    +     I   R  K+  
Sbjct: 59  EMGAPEVEAFLSHLATAENVSANTQNQAMHAVLYLYKHVLGIDLPWLDGITRARESKR-- 116

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-M 182
            LP  + +++   L+ +V     H T      +  I+ LLYG G+R+ E L L  ++I +
Sbjct: 117 -LPVVMTQRETQALLRHV-----HGT------SGTIIKLLYGTGMRLLEGLRLRVKDIDL 164

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSV---------RKAILEYYDLCPFDLNLNIQLPLFR-- 231
           + +  +  +GKG+K R+  L  S+          + ++   DL     ++ +   + R  
Sbjct: 165 ERREIIIREGKGNKDRVTMLPASLVDELRDHLQARRVIHDRDLSTGHADVELPHAIERKY 224

Query: 232 ------------------------GI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
                                   GI R   +   V QR +R   R  G+P     HTLR
Sbjct: 225 PQAGRQWAWQYVFAAKSYSTDPRTGIYRRHHVGEWVIQRGVRAAARAAGIPKLVHPHTLR 284

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           HSFA+HLL NG D+R++Q +LGH  + TT IYT+V ++ G
Sbjct: 285 HSFASHLLENGSDIRTVQELLGHADVKTTMIYTHVLNRGG 324


>gi|191168019|ref|ZP_03029820.1| integrase [Escherichia coli B7A]
 gi|190901957|gb|EDV61705.1| integrase [Escherichia coli B7A]
          Length = 337

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 104/237 (43%), Gaps = 31/237 (13%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSN 123
           Q++ + I  + + RR+Q I   S+ R L+ I   F   ++      E  I   + LK+  
Sbjct: 100 QITKSLISQYCATRRSQGIKPSSINRDLTCISGMFTALIEAELFFGEHPIRGTKRLKEEK 159

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
                L +++   L+             +D  N  I  L    G R  EA  L  +NI+ 
Sbjct: 160 PDTGYLTQEEIALLLAA-----------LDGDNKKIAILCLSTGARWGEAARLKAENIIH 208

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           ++ T  ++ K +K R VP+  +V K I +                  RG      +   F
Sbjct: 209 NRVTF-VKTKTNKPRTVPISEAVAKMIADNK----------------RGFLFPDADYPRF 251

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +R ++ ++    LP+    H LRHSFATH + NGG + ++Q ILGH R+  T +Y +
Sbjct: 252 RRTMKAIKP--DLPMGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAH 306


>gi|289668108|ref|ZP_06489183.1| putative integrase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 285

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 84/182 (46%), Gaps = 39/182 (21%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV----------RKAI 210
           LLYG G+R+ E L L  +++   +  + ++ GKG K R VPL P +          R  +
Sbjct: 87  LLYGSGMRLLECLRLRTKDVDVVRGEIVVRDGKGGKDRQVPL-PHILRGKLMQQRERALL 145

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG---------------------------VF 243
           L   DL      + +   L R      + PG                           V 
Sbjct: 146 LHDADLAEGAGRVFLPHALARKYPNVDVEPGWQYLFLAARRSVDPRSGRVGRHHLSEEVL 205

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           QR ++  RR  G+    T HTLRH+FATHLL  G D+R++Q +LGH  ++TTQIYT+V  
Sbjct: 206 QRAVQVARRQAGITKPATCHTLRHAFATHLLEAGHDIRTVQELLGHKDVTTTQIYTHVLG 265

Query: 304 KN 305
           + 
Sbjct: 266 RG 267


>gi|167470505|ref|ZP_02335209.1| tyrosine recombinase XerD [Yersinia pestis FV-1]
          Length = 145

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 78/147 (53%), Gaps = 6/147 (4%)

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGI 233
            LT  ++   Q  +R+ GKG+K R+VPL       I  Y +   P+ +N      LF   
Sbjct: 1   GLTISDVSLRQGVVRVIGKGNKERLVPLGEEAVYWIENYMEHGRPWLVNGASLDVLFPSN 60

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           R + +    F   I+      G+     + H LRH+FATHLL++G DLR +Q +LGH  L
Sbjct: 61  RSQQMTRQTFWHRIKHYAILAGIDSERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDL 120

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHP 319
           STTQIYT+V ++     + +++ Q HP
Sbjct: 121 STTQIYTHVATER----LRQLHQQHHP 143


>gi|13474970|ref|NP_106607.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|13474971|ref|NP_106531.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025717|dbj|BAB52317.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025794|dbj|BAB52393.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 407

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 135/302 (44%), Gaps = 18/302 (5%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ--TI 63
           LPE+ +    K    + + L  ERGLS  TL +Y    R FL       +E+   +    
Sbjct: 103 LPEVDTSAKGKLIDAFGEFLRKERGLSASTLTNYLPIIRGFL-------DEQFGGKDPGF 155

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--K 121
             L   ++  FI  RR Q       K +++ ++SFL++L++R +      + +  +   +
Sbjct: 156 DHLRVGDVHRFIV-RRAQAGSLGRAKLAVTALRSFLRFLQQRGLLATDLAVAVPGIAGWR 214

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              LP+AL  +Q    V+ +L      T     R+ A+L LL   GLR  E  +LT  ++
Sbjct: 215 LAHLPKALRAEQ----VERLLASCDRRTP-AGRRDYAVLMLLARLGLRGGEVSALTLDDL 269

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
             D   + + GKG ++  +PL   V  A+++Y        +        R  R   ++  
Sbjct: 270 DWDCGEIVVHGKGQRLARLPLPADVGAALVDYLRQDRPACSTRRVFIRTRAPRRGFVSQS 329

Query: 242 VFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                +R+  +  GL P    AH LRHS AT LL  G  L  I  +L H + +TTQIY  
Sbjct: 330 TICCIVRRALKRAGLTPAFKGAHLLRHSLATDLLRRGASLVEIGQLLRHSQPNTTQIYAK 389

Query: 301 VN 302
           V+
Sbjct: 390 VD 391


>gi|218134658|ref|ZP_03463462.1| hypothetical protein BACPEC_02561 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990043|gb|EEC56054.1| hypothetical protein BACPEC_02561 [Bacteroides pectinophilus ATCC
           43243]
          Length = 282

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 131/286 (45%), Gaps = 32/286 (11%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           ++N   +R L + T+Q Y  D   FL ++          + +  L+  +  +F++ +R +
Sbjct: 9   IRNEAEKRNLRERTIQLYCSDVSYFLRWIG---------KNVSDLTLEDAESFLTAKRLE 59

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                +     S IK FL Y K  KI  + + +    +K+  +LP  L+  +   ++D  
Sbjct: 60  GRSPETHNHYRSAIK-FL-YKKVLKIVWDDDTVPA--MKRERNLPAVLSRDEINAIIDAT 115

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
                      + ++ AI+  +Y  GLR+SE + L   +I     T+ ++    +I    
Sbjct: 116 P----------NLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGRIDRYT 165

Query: 202 LLPSVRKAIL-EYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +L      +L EY+  C  P D    I  P      G  L+     ++ ++  +  G+  
Sbjct: 166 ILSQKNLDLLTEYWFKCGRPKD----ILFP--SSWSGGYLDIASVNQFFKKSAKLAGINR 219

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             ++H  RHSFA+HL  +G D++ IQS+LGH    +T +Y +V++K
Sbjct: 220 HVSSHACRHSFASHLFESGTDIKYIQSLLGHVDPRSTDVYLHVSNK 265


>gi|126667680|ref|ZP_01738648.1| hypothetical protein MELB17_10268 [Marinobacter sp. ELB17]
 gi|126627783|gb|EAZ98412.1| hypothetical protein MELB17_10268 [Marinobacter sp. ELB17]
          Length = 303

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 79/149 (53%), Gaps = 10/149 (6%)

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPF- 219
           Y  GLR+SE+L+LT  ++  D   +R+    GKG K R VPL     KA+  Y+      
Sbjct: 134 YSLGLRLSESLNLTIADV--DSHLMRVHVRCGKGKKDRFVPLPLMTLKALRRYWATHRHP 191

Query: 220 DLNLNIQLPLFRGI--RGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
           DL      P +  +   GKP  +  G  Q+ I+Q+    G+      H++ HSFATH+L 
Sbjct: 192 DLLFPGWHPPYASVATSGKPRVMARGGVQKAIKQVALDCGIRKHVHIHSMGHSFATHMLE 251

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           NG +LRSIQS+LGH    TT  YT +  +
Sbjct: 252 NGVNLRSIQSLLGHASPVTTARYTRMTHE 280


>gi|198282466|ref|YP_002218787.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198282807|ref|YP_002219128.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218665405|ref|YP_002425001.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218666076|ref|YP_002426784.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218666400|ref|YP_002425323.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198246987|gb|ACH82580.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198247328|gb|ACH82921.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218517618|gb|ACK78204.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218518289|gb|ACK78875.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218518613|gb|ACK79199.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 414

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 133/301 (44%), Gaps = 50/301 (16%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           +++  ERGLS +T+ +  C+   +  F A     + T+  I   +  ++ AF+  +  Q 
Sbjct: 127 RHMREERGLSPVTIAT-RCERLGW--FFAGLNPPRGTLDAI---TICDLDAFVELKGQQG 180

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-----ALNEKQALTL 137
               SL    S ++SF  + + R           + L  +   PR      + E      
Sbjct: 181 WTRASLGSLASSLRSFFAFAEARGWCA-------KGLTATIESPRLYTREGIPEGPGWED 233

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           V  +L+ T+ +   +D R+ AIL LL   GLR  E  +L  +++  D         GDKI
Sbjct: 234 VQRLLVSTAGDHP-VDIRDRAILMLLALYGLRRGEVAALQLEHLDWD---------GDKI 283

Query: 198 RIV----------PLLPSVRKAILEYY-DLCP----FDLNLNIQLPLFRGIRGKPLNPGV 242
            +V          PLLPSV +AI+ Y  D+ P      L L I  P+      +PL+   
Sbjct: 284 CVVRPKQRIAQRYPLLPSVGEAIVRYLRDVRPQCEHRALFLTIGAPM------RPLSAES 337

Query: 243 FQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                R     LGL LS   AH LRH+ A+HLLS+G  L+ I   LGH   ++   YT V
Sbjct: 338 ISHVARARLNQLGLTLSPRGAHCLRHACASHLLSSGFSLKQIGDHLGHRNANSALSYTKV 397

Query: 302 N 302
           +
Sbjct: 398 D 398


>gi|254167363|ref|ZP_04874215.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|197623626|gb|EDY36189.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
          Length = 310

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 81/152 (53%), Gaps = 11/152 (7%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----QGKGDKIRIVPLLPSVR 207
           ++ARN A+L LL+  G+RI EA++L   +I     +L I     GKG+K RIVPL P V 
Sbjct: 127 VNARNRALLNLLFATGIRIGEAIALNWNDIDLTNPSLPILHIRHGKGEKKRIVPLPPKVL 186

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYLGLPLSTTAHTLR 266
           K +++Y +    + + N    +F    G+  +P  F R I ++     G+P    AH  R
Sbjct: 187 KMLIDYKEKYRINSDPN---AIFTTPHGRITHP--FARKICKEAGELAGVP-QFHAHAAR 240

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           H  A   L +G +L +I+  LGH  L TTQ Y
Sbjct: 241 HWRAIAWLKDGVNLETIRRFLGHSSLKTTQRY 272


>gi|238923573|ref|YP_002937089.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|238925721|ref|YP_002939238.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|238875248|gb|ACR74955.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|238877397|gb|ACR77104.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|291524021|emb|CBK89608.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 282

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 133/286 (46%), Gaps = 32/286 (11%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           ++N   +R L + T+Q Y  D   FL ++          + +  L+  +  +F++ +R +
Sbjct: 9   IRNEAEKRNLRERTIQLYCSDVSYFLRWIG---------KNVSDLTLEDAESFLTAKRLE 59

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
               RS   + +  +S +K+L K+ + T  +   +  +K+  +LP  L+  +   ++D  
Sbjct: 60  G---RS-PETHNHYRSAIKFLYKKVLKTVWDDDTVPAMKRERNLPAVLSRDEINAIIDAT 115

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV 200
                      + ++ AI+  +Y  GLR+SE + L   +I     T+ + + KG   R  
Sbjct: 116 P----------NLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGRIDRYT 165

Query: 201 PLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            L       + EY+  C  P D    I  P      G  L+     ++ ++  +  G+  
Sbjct: 166 ILSQKNLDLLTEYWYKCGRPKD----ILFP--SSWTGGYLDITGVNQFFKKSAKLAGITR 219

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             ++H  RHSFA+HL  +G D++ IQS+LGH    +T +Y +V++K
Sbjct: 220 HVSSHACRHSFASHLFESGTDIKYIQSLLGHVDPRSTDVYLHVSNK 265


>gi|210622505|ref|ZP_03293210.1| hypothetical protein CLOHIR_01158 [Clostridium hiranonis DSM 13275]
 gi|210154218|gb|EEA85224.1| hypothetical protein CLOHIR_01158 [Clostridium hiranonis DSM 13275]
          Length = 302

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 136/285 (47%), Gaps = 15/285 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L+KE   +++ +E +R LS  T+ SY  D +++  +L    E  I I+ + +   T+I  
Sbjct: 14  LIKE---YIEYIENKRKLSLNTVSSYRADLKKYKDYLE---ENNIDIKDVVE---TDILN 64

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++ +         ++ R+ S IKSF  YL   KI       N++  K        L E++
Sbjct: 65  YLVELEKNNTSVSTIARTTSSIKSFHDYLFFSKICAIDPAKNIKKPKIKKETVEILTEEE 124

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+ N     S++ K    R+ AI  +LYG G+++SE + L  +++  +  ++     
Sbjct: 125 IEALL-NFENLDSNKLK----RDKAIFEVLYGTGMKVSELIDLNVEDVDFEMGSITCSSS 179

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            +K R++PL+   +K +  Y +    ++  + +  LF    G         + I++  + 
Sbjct: 180 KNK-RVIPLIDVTKKYLELYVNEARENVVADGENALFVSALGHRFTRQGLWKIIKKYSKK 238

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             +  +     LRHSFA H+++ G ++ S+  ILG+  LS+ Q Y
Sbjct: 239 ANIDKNINPTMLRHSFAIHMINKGANIASVNKILGNTNLSSIQSY 283


>gi|82703905|ref|YP_413470.1| Phage integrase [Nitrosospira multiformis ATCC 25196]
 gi|82411970|gb|ABB76078.1| Phage integrase [Nitrosospira multiformis ATCC 25196]
          Length = 323

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 125/296 (42%), Gaps = 31/296 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W  NL      +  T ++Y    + F+ F      ++      R ++   + A+  +   
Sbjct: 36  WFANLP-----NDATRRAYNNALKDFMGFTDITRPDEF-----RSVTRAHVIAWRDELVK 85

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN--LKKSNSLPRALNEKQALTLV 138
           + +   +++  L+ + S  +YL +R   T + +  ++   ++       AL + QA  L+
Sbjct: 86  RSLSGTTIRHRLAALSSLFEYLCERNAVTHNPVKGVKRPPVESYEGKTPALGDHQARALL 145

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKGD 195
           D       H       R+ A+L  L    LR  E   LT ++   ++     LR+ GKG 
Sbjct: 146 D-----APHSLSLKGKRDRALLATLLYHALRRDELCRLTVKDFRHERRGVRHLRVLGKGG 200

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR-------GIRGKPLNPGVFQRYIR 248
           K R +PL P+    I EY +            PLF        G+  K L P    + +R
Sbjct: 201 KTRYIPLHPAASTLITEYLEAAGH--GAEDSAPLFHPVSNNCAGVSSKALTPDGVYKLVR 258

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +    LG  +    H+LR + AT+ L +  D+  +Q  LGH  +STT+IY +  S+
Sbjct: 259 EYSSNLGFEIGP--HSLRATAATNALDHQADISKVQEWLGHANISTTRIYDHRRSR 312


>gi|315641029|ref|ZP_07896112.1| integrase/recombinase [Enterococcus italicus DSM 15952]
 gi|315483198|gb|EFU73711.1| integrase/recombinase [Enterococcus italicus DSM 15952]
          Length = 325

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 144/294 (48%), Gaps = 28/294 (9%)

Query: 26  EIERGLSKLTLQSYECDTRQFL-IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           E  RG+S+ T++ ++    +FL +F  F  +E+I    +  ++   IR F+  +  +   
Sbjct: 17  EKARGISQKTIKKHQ----KFLKLFFDFLKKEQIYF--VEDVTPKSIRQFMLMKLEEGCA 70

Query: 85  DRSLKRSLSGIKSFLKY-LKKRKITTESN-ILNMRNLKKSNSLPRALNE---KQALTLVD 139
           +  +   L  I+++ KY + +  I  + N  + ++ +K+   + +  N+   K+ L +  
Sbjct: 71  ETYVNSHLRSIRAYFKYCVDEDYIRYDRNPCVRVKWVKERKVIIQTFNDMEIKEMLRVAK 130

Query: 140 NVLL---------HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            +           HT ++TK+ + R+  +L +L   GLRI+E ++L   +I + +  +  
Sbjct: 131 KLTFFKPQKMDKQHTGYQTKFTNQRDYLLLLILIDTGLRINEVMNLKDVHITNKELFVE- 189

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCP--FDLNL--NIQLPLFRGIRGKPLNPGVFQRY 246
            GKG K RIV   P + K  ++Y  +    F+ N   NI   +F    GK  N  + +R 
Sbjct: 190 NGKGKKDRIVHCSPLIYKEYIKYKRVANSFFEYNEIENIDNYVFLTREGKQYNYILAERA 249

Query: 247 IRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           I ++     +   +  + H+ RH FA  L+ NG D+  IQ +LGH  + TT++Y
Sbjct: 250 IIKIGNQCKIRKSIRVSPHSFRHYFAQKLVRNGTDIYRIQKLLGHASIKTTEVY 303


>gi|220919754|ref|YP_002495057.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|219952174|gb|ACL62565.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 286

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 77/152 (50%), Gaps = 14/152 (9%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL 216
           A L + YGCGLR+SE  +L   +I   +  +R+ QGKG K R V L P +   + +++  
Sbjct: 126 AALSVAYGCGLRVSEIANLKVTDIDSARMLIRVEQGKGRKDRFVMLSPDLLDLLRQWW-- 183

Query: 217 CPFDLNLNIQLP---LFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                   ++ P   LF G +  +P+      R          +    + HTLRHSFATH
Sbjct: 184 -------RVKRPRGWLFPGQQPAQPITTRQLNRACHAAAEAARIDKRVSMHTLRHSFATH 236

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           LL    D+R IQ +LGH +L TT +YT V  K
Sbjct: 237 LLERKTDIRVIQVLLGHRKLDTTAVYTRVALK 268


>gi|32474105|ref|NP_867099.1| integrase/recombinase [Rhodopirellula baltica SH 1]
 gi|32474789|ref|NP_867783.1| integrase/recombinase y4qk [Rhodopirellula baltica SH 1]
 gi|32444642|emb|CAD74644.1| putative integrase/recombinase [Rhodopirellula baltica SH 1]
 gi|32445329|emb|CAD75330.1| putative integrase/recombinase y4qk [Rhodopirellula baltica SH 1]
          Length = 282

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 109/242 (45%), Gaps = 27/242 (11%)

Query: 65  QLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           +LS  ++R ++  RR Q ++G      S+  I   LK+  +  +  +   L      KSN
Sbjct: 31  KLSEAQVRQYVLLRRQQLQLG------SMRPIVGALKFFFRVTVPRDWPTLQAIRFPKSN 84

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           +LP  L  ++   L+D  +   SH           I   +Y CGLR  +   L PQ++  
Sbjct: 85  TLPMVLVPERCWQLIDATV--ASHL--------QVIFRAMYSCGLRGVDVRHLRPQDVDA 134

Query: 184 DQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR-----GIRGKP 237
           D+  LR+   KG + R VPL  +   A   ++       N N   P  +         +P
Sbjct: 135 DRMMLRVCTTKGHRQREVPLPQATLDAFRAHWAT---HRNPNWLFPATQRNTPASKADQP 191

Query: 238 LNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           ++    QR   ++   LG   S  T HTLRHS+AT +L  G +L+ +Q  LGH  L  T+
Sbjct: 192 ISARTIQRGFTKVTESLGWQDSGLTPHTLRHSYATAMLDAGVNLKVLQGYLGHKNLQATE 251

Query: 297 IY 298
           +Y
Sbjct: 252 VY 253


>gi|254450263|ref|ZP_05063700.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264669|gb|EDY88939.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 315

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 75/150 (50%), Gaps = 8/150 (5%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL 216
           A L + YG GLR SE   L   +I   +  + + +GK  K R   L P +   + EY+  
Sbjct: 148 AALGISYGAGLRASEVCHLKVVDIDSGRMLIHVDEGKNGKDRKAMLSPGLLDLLREYW-- 205

Query: 217 CPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
               L    +  LF G  +  PL+     R     +   G+    T HTLRHSFATHLL 
Sbjct: 206 ----LEARPEGWLFPGKPKINPLSLRQLNRAFTSAKHMAGINKPATLHTLRHSFATHLLE 261

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            G D+R IQ +LGH +LSTT  YT+V +K 
Sbjct: 262 AGTDVRVIQVLLGHSKLSTTARYTHVAAKT 291


>gi|91218172|ref|ZP_01255121.1| putative integrase/recombinase Y4QK [Psychroflexus torquis ATCC
           700755]
 gi|91218500|ref|ZP_01255439.1| putative integrase/recombinase Y4QK [Psychroflexus torquis ATCC
           700755]
 gi|91183331|gb|EAS69735.1| putative integrase/recombinase Y4QK [Psychroflexus torquis ATCC
           700755]
 gi|91183719|gb|EAS70113.1| putative integrase/recombinase Y4QK [Psychroflexus torquis ATCC
           700755]
          Length = 203

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 99/197 (50%), Gaps = 24/197 (12%)

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
           + +  +K+ N LP  LN+K+   L+           K++  ++  +L +LYGCGLR  E 
Sbjct: 8   IQLPQIKRQNDLPIVLNKKEVRELLK--------APKYL--KHQLMLAMLYGCGLRSYEL 57

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKI-RIVPLLPSVRKAILEYYDL-CPFDLNLNIQ----- 226
            +L   +I  ++ T+ ++ +  KI R VPL   + + + +Y+    P     N Q     
Sbjct: 58  CNLLQADIDFERKTVFVKKQKGKIDRYVPLSAHLIRGLQKYFKTENPVKHVFNSQKTTDC 117

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           LP        P+     Q  I++ R  +      TAHTLRHS+ATHLL +G ++  ++ +
Sbjct: 118 LP-------GPITTRALQWVIKECRPKVNTQKKFTAHTLRHSYATHLLEDGLNIMCLKEL 170

Query: 287 LGHFRLSTTQIYTNVNS 303
           LGH  + TT +Y  V++
Sbjct: 171 LGHAHIETTIVYLQVSN 187


>gi|212634737|ref|YP_002311262.1| Phage integrase [Shewanella piezotolerans WP3]
 gi|212556221|gb|ACJ28675.1| Phage integrase [Shewanella piezotolerans WP3]
          Length = 342

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 143/334 (42%), Gaps = 64/334 (19%)

Query: 9   IVSFELLKERQNWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +V FE+  +   ++  +  E   R  S  T +SY    R F+ +       +I+   I Q
Sbjct: 18  VVFFEVTMKESGYISAIRTEIRVRHYSYQTEKSYLYWNRYFINYCQISHGSEISASKIGQ 77

Query: 66  -LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            L Y   +  +S   TQK       ++L  I    +Y+ K     +++ L+    K    
Sbjct: 78  FLCYIAEQCNVSAS-TQK-------QALCAIVFACRYVLK----MDTSGLDFPYAKAPKR 125

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MD 183
           +P+ L+ ++A  ++             +   +  I  +L+G GLR+ EAL +  ++I ++
Sbjct: 126 IPQVLSTEEAKQIIGQ-----------MSGDHFLIAAILFGAGLRLKEALRIRVKDIDLN 174

Query: 184 DQSTLRIQGKGDKIRIV--------PL---LPSVRK-----------------AILEYYD 215
           ++S    QGKG K R+         PL   +  VRK                 ++++ Y 
Sbjct: 175 NKSIFIHQGKGKKDRVCILPNELISPLELQIEKVRKIHNKDYKAGFGMAALPISLIKKYG 234

Query: 216 LCPFDLNLNIQLPLFR--------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                 +     P  R         I    ++P  F + +R   +   +    TAHT RH
Sbjct: 235 ASARKFHWQFFFPATRRCIHPSDGYICRHHIHPTAFSKALRLATKKAAIDKRVTAHTFRH 294

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL  G DLR+IQ ++GH  + TTQIYT+V
Sbjct: 295 SFATALLRKGYDLRTIQELMGHTDIKTTQIYTHV 328


>gi|223041236|ref|ZP_03611485.1| hydrogenase expression/formation protein [Campylobacter rectus
           RM3267]
 gi|222877495|gb|EEF12627.1| hydrogenase expression/formation protein [Campylobacter rectus
           RM3267]
          Length = 354

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 78/142 (54%), Gaps = 7/142 (4%)

Query: 166 CGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
            G+R+SEALSL  ++I +D     +RI+GKG+K R+V +    R+ I  + D    +  +
Sbjct: 202 TGIRVSEALSLKRKDIAEDGELYVIRIRGKGNKYRVVMI---KRRLIEAHLDAIAINY-I 257

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRS 282
           N +  LF   +G  L      R + Q+    G+      AH LRH+FAT L     DL  
Sbjct: 258 NKEGYLFINKKGTRLTQAYVSRIVEQILFKAGIRKEKNGAHMLRHTFATMLYKKQKDLVL 317

Query: 283 IQSILGHFRLSTTQIYTNVNSK 304
           +Q +LGH  L+T++IYT+ +S+
Sbjct: 318 VQEVLGHASLNTSRIYTHFDSE 339


>gi|71725297|ref|YP_272272.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71558887|gb|AAZ38096.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 319

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 126/295 (42%), Gaps = 41/295 (13%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W  NL+  R     T ++Y+ D   F  F+   + +       RQ++ + + A+ +    
Sbjct: 32  WFANLDNRR-----TRRAYQNDLTDFSSFIGLASADDF-----RQVTRSHVLAWRADLEQ 81

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVD 139
           + +   +++R L+ + S   YL       E+N +   N       PR   NE +   L D
Sbjct: 82  RGLAGATIRRKLAALASLFDYL------LENNAVAGGNPVHGVKRPRIETNEGKTPALGD 135

Query: 140 NV---LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194
           +    LL           R+ AIL +L   GLR  EA  L   ++ + +    LR+ GKG
Sbjct: 136 HQAKQLLEAPDTETLKGLRDRAILAVLLYHGLRREEAAQLHTHDLQERRGIKHLRVHGKG 195

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG--------VFQRY 246
            KIR +PL P   + I  Y  L           PLFR +RG              V + Y
Sbjct: 196 SKIRFLPLHPVAAERIYAY--LEQDSERAAKPGPLFRSLRGTTTGAAITANGIYSVVEAY 253

Query: 247 IRQ---LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            ++   +  +LG+      H LR + AT+ L +  D+  +Q  LGH  +STT++Y
Sbjct: 254 AKKAGIVVEHLGV------HGLRATAATNALEHDADIAKVQMWLGHANISTTRLY 302


>gi|126665396|ref|ZP_01736378.1| putative integrase/recombinase [Marinobacter sp. ELB17]
 gi|126669108|ref|ZP_01740038.1| putative integrase/recombinase [Marinobacter sp. ELB17]
 gi|126626435|gb|EAZ97102.1| putative integrase/recombinase [Marinobacter sp. ELB17]
 gi|126630024|gb|EBA00640.1| putative integrase/recombinase [Marinobacter sp. ELB17]
          Length = 331

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 126/294 (42%), Gaps = 27/294 (9%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L++L  ER L+  T +SY     Q L +LA    + I   T+   S   +R F+S    Q
Sbjct: 16  LEHLVAERNLALNTQKSYRDMLMQLLPYLAGKANKAIDRLTVDDFSPQAVRLFLSHMEQQ 75

Query: 82  KIGDRSLK-RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD- 139
           +    S + + L GI +  +++       E +  ++    +   +P     + A+  +D 
Sbjct: 76  RNCTISTRNQRLGGIHALARFI------AEHSPEHIGWCAQIRLIPFKKTSQPAIIYLDK 129

Query: 140 ---NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
              + LL    +      R  A+L  LY  G R+SEA+ L   +I      +R+ GKG+K
Sbjct: 130 PEMDALLAAPDDHTEQGRREQALLLFLYNSGARVSEAVQLKIGDIDWHAQCVRVVGKGNK 189

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY--- 253
            R  PL  S  + +    D            P+F     +P+        +++       
Sbjct: 190 QRRCPLWTSTLERLHVLVD------GREATQPVFLNRCHQPMTRSGIHTLVKRCAARACA 243

Query: 254 -----LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                L  P+S   H +RHS A HLL  G D+ +I++ LGH  L+TT IY  ++
Sbjct: 244 RAPSLLNKPVS--PHVIRHSTACHLLQAGVDINTIRAWLGHVSLTTTNIYAEID 295


>gi|300923563|ref|ZP_07139594.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|300420171|gb|EFK03482.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
          Length = 337

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 105/237 (44%), Gaps = 31/237 (13%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT-TESNILNMRNLKKSN 123
           Q++ + I  + + RR+Q I   S+ R L+ I      L + ++   E  I   + LK+  
Sbjct: 100 QITKSLISQYCATRRSQGIKPSSINRDLTCISGMFTALIEAELYFGEHPIRGTKRLKEEK 159

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
                L +++   L+             +D  N  I  L    G R  EA  L  +NI+ 
Sbjct: 160 PDTGYLTQEEIALLLAA-----------LDGDNKKIAILCLSTGARWGEAARLKAENIIH 208

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           ++ T  ++ K +K R VP+  +V K I +                  RG      +   F
Sbjct: 209 NRVTF-VKTKTNKPRTVPISEAVAKMIADNK----------------RGFLFPDADYPRF 251

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +R ++ ++    LP+    H LRHSFATH + NGG + ++Q ILGH R+  T +Y +
Sbjct: 252 RRTMKAIKP--DLPMGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAH 306


>gi|91792490|ref|YP_562141.1| integron integrase [Shewanella denitrificans OS217]
 gi|91714492|gb|ABE54418.1| Integron integrase [Shewanella denitrificans OS217]
          Length = 319

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 112/251 (44%), Gaps = 54/251 (21%)

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           K++L  I    +++ K     E N L     K    +P+ L+ ++A  ++ N        
Sbjct: 70  KQALCAIVFACRHVLK----IEPNELQFPYAKAPKRIPQVLSNEEAKLIISN-------- 117

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPS-- 205
              +   +  I  +L+G GLR+ EAL L  ++I +  +S    +GKG K R+  +LP+  
Sbjct: 118 ---LSGYHYLIGAILFGSGLRLKEALKLRVKDIDLTTKSIFVYRGKGQKDRVC-MLPNGL 173

Query: 206 ---VRKAILEYYDLCPFDLN-----LNIQLPLFRGIRGKP-------------------- 237
              ++  + +   L   DL+      ++ + L R  R                       
Sbjct: 174 IDVLKSQMKQVKKLHEADLSDGFGLASLPISLIRKYRSNASKFHWQYIFPASRRCMHPSD 233

Query: 238 -------LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
                  ++P  F R +RQ     G+    TAHT RHSFAT LL  G D+R+IQ +LGH 
Sbjct: 234 NYVCRHHIHPTAFSRALRQATTNCGIDKRVTAHTFRHSFATSLLLKGHDIRTIQELLGHS 293

Query: 291 RLSTTQIYTNV 301
            + TT+IYT+V
Sbjct: 294 DVKTTEIYTHV 304


>gi|163783966|ref|ZP_02178933.1| recombinase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880762|gb|EDP74299.1| recombinase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 291

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 128/288 (44%), Gaps = 51/288 (17%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T+++Y  D +QF         E IT          +I  F    +++++   ++ R L+ 
Sbjct: 21  TVKNYNVDLKQFAQIAGDKDVESIT--------KADIAKFRMVLQSKRLKSSTIARKLAC 72

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + SF +YL   ++ + S I      K SN +P +L  ++   +++N            + 
Sbjct: 73  LNSFFQYLIDLELISSSPITKSHRPKVSNKIPSSLTHEEIKRVIENA----------DNI 122

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM------------------DDQSTLRIQGKGDK 196
            +  I+ +L   GLR +E L +  +NI+                   D + +++ GKG+K
Sbjct: 123 MDKLIIKILLTTGLRSAEILDIRRENIIIERNGQLFNIDYIENLQEGDIAYIKVLGKGNK 182

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            RIVPL  +V + +  Y  L  + ++     P+F      P++     R I  + +  G+
Sbjct: 183 ERIVPLSENVLEELFNY--LKKYKVS-----PIF------PISYHSLWRRIINIGKKAGV 229

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            L    H LRH+ AT  L +G +LR IQ +LGH    TT  Y  VN K
Sbjct: 230 ILH--PHKLRHTAATLALQSGAELRVIQELLGHASPLTTARYAKVNQK 275


>gi|58583855|ref|YP_202871.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625654|ref|YP_453026.1| site-specific recombinase IntIA [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188574819|ref|YP_001911748.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58428449|gb|AAW77486.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84369594|dbj|BAE70752.1| site-specific recombinase IntIA [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188519271|gb|ACD57216.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 291

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 90/182 (49%), Gaps = 39/182 (21%)

Query: 162 LLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD---- 215
           LLYG G+R+ E L L  +++  +  +  +R+ GKG K R VPL  S+R  +++  +    
Sbjct: 93  LLYGSGMRLLECLRLRIKDVDVVRGEIVVRV-GKGGKDRWVPLPHSLRGELMQQRERALL 151

Query: 216 -------------LCPFDL-----NLNIQLP---LF----RGIRGKPLNPG-------VF 243
                          P  L     N +++     LF    R +  +    G       V 
Sbjct: 152 LHAADLAEGAGRAFLPHALARKYPNADVEHGWQYLFPAAPRSVDPRSGRVGRHHVSEKVL 211

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           QR ++  R+  GL    T HTLRHSFATHLL  G D+R++Q +LGH  ++TTQIYT+V  
Sbjct: 212 QRAVQAARQQAGLAKPATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVATTQIYTHVLG 271

Query: 304 KN 305
           + 
Sbjct: 272 RG 273


>gi|300854163|ref|YP_003779147.1| phage related integrase [Clostridium ljungdahlii DSM 13528]
 gi|300434278|gb|ADK14045.1| phage related integrase [Clostridium ljungdahlii DSM 13528]
          Length = 336

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 131/291 (45%), Gaps = 23/291 (7%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF---ISKRRTQ 81
           L+ E G S  T++SY      F  ++  +   KI    +  LS   +  F   I K R  
Sbjct: 18  LDREAGFSPNTIKSYRDTFILFFRYIELFRICKINKLNMDILSADNVNDFLNWIEKERQC 77

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKR---KITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            +  R+  + L+ +KSF  Y+ +    K      +L +R  K +      LN  +A++  
Sbjct: 78  TVSSRN--QRLAALKSFCIYVIRENPEKSDICQQVLGIRAKKATQKSIGYLN-IEAISY- 133

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKI 197
              LL    +T     R+ A+L LLY  G R+ E + L   +I     +T+ + GKG+KI
Sbjct: 134 ---LLKMPDKTSDRGIRDLALLALLYETGCRVQEIIDLKIGDISFRIPNTVALTGKGNKI 190

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQRYIRQLRR- 252
           R+VP+   V + I  Y  +       N +  +F    G PL+      +  +Y    R+ 
Sbjct: 191 RVVPISQQVSEIIKNYLSIST---RHNFEENIFVNRLGNPLSRSGVAYILNKYGDMARKN 247

Query: 253 YLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            L L P     H LRHS A HLL N  +L  I+  LGH  ++TT+IY   N
Sbjct: 248 RLDLYPYKLHPHILRHSKAMHLLENNVNLIYIRDFLGHSSVTTTEIYARCN 298


>gi|254478357|ref|ZP_05091736.1| site-specific recombinase, phage integrase family
           [Carboxydibrachium pacificum DSM 12653]
 gi|214035715|gb|EEB76410.1| site-specific recombinase, phage integrase family
           [Carboxydibrachium pacificum DSM 12653]
          Length = 306

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/276 (21%), Positives = 131/276 (47%), Gaps = 9/276 (3%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRS 87
           + L+++T++ YE   + F  ++     ++  I  I  +    I+A++S R+ + K    +
Sbjct: 17  KNLTEITVKGYERSLKAFHDYII----QQHQILNIEDVRPYHIKAYLSYRKKELKNNAET 72

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           +   +  +K+F  Y  K ++  E+ +     ++K+++      +     ++         
Sbjct: 73  INHEIRNLKAFFNYFVKERVINENPV--TVPVQKTDTKIETFTDYHIRQMLRYYRKQKQR 130

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
              +   R   ++ +L G G+R+ E  +L  ++I    + + + GKG + R +PL  +++
Sbjct: 131 GDNFYAYRGYIMILILLGTGIRLGEMCNLRWKDIDFVNAKMTVIGKGRRQRTIPLTDNLK 190

Query: 208 KAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTL 265
           K ++E+       L N+     +     GK +N    + + ++L++ +    +  + HT 
Sbjct: 191 KELMEWRFYVEKKLGNVTEDSFVIPTQTGKRMNENSVKTFFQRLKKIMNFRDVRLSPHTF 250

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           RH+FA   + +GGD+ S+Q ILGH  +  T  Y N+
Sbjct: 251 RHTFAKQWILSGGDVFSLQRILGHSTIEVTNKYVNL 286


>gi|160873053|ref|YP_001557059.1| integron integrase [Shewanella baltica OS195]
 gi|160858575|gb|ABX51799.1| integron integrase [Shewanella baltica OS195]
          Length = 319

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 103/230 (44%), Gaps = 50/230 (21%)

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
           E N L     K    +P+ L+ ++A  ++ N           +   +  I  +L+G GLR
Sbjct: 87  EPNELQFPYAKAPKRIPQVLSNEEAKLIISN-----------LSGYHYLIGAILFGSGLR 135

Query: 170 ISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPS-----VRKAILEYYDLCPFDLN- 222
           + EAL L  ++I +  +S    +GKG K R+  +LP+     ++  + +   L   DL+ 
Sbjct: 136 LKEALKLRVKDIDLTTKSIFVYRGKGQKDRVC-MLPNGLIDVLKSQMKQVKKLHEADLSD 194

Query: 223 ----LNIQLPLFRGIRGKP---------------------------LNPGVFQRYIRQLR 251
                ++ + L R  R                              ++P  F R +RQ  
Sbjct: 195 GFGLASLPISLIRKYRSNASKFHWQYLFPASRRCMHPSDNYVCRHHIHPTAFSRALRQAT 254

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              G+    TAHT RHSFAT LL  G D+R+IQ +LGH  + TT+IYT+V
Sbjct: 255 TNCGIDKRVTAHTFRHSFATSLLLKGHDIRTIQELLGHSDVKTTEIYTHV 304


>gi|258514706|ref|YP_003190928.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257778411|gb|ACV62305.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 342

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 135/306 (44%), Gaps = 15/306 (4%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G S  T++SY      F  ++       IT  T  Q +   I  F+     Q     +  
Sbjct: 26  GRSPDTIESYRDALTIFRRYVLNELNISITKFTFAQCTRNCIFGFLEYLAAQGNKPGTRN 85

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           + L+ +KS+L +   + +T +S  L +  + +   L   + EK  L+      +     +
Sbjct: 86  QRLAALKSYLWFAADKDVTLQSIALELSRIPQ---LKNPVTEKFVLSEEALNAIFIQPAS 142

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVR 207
             +  R+  I+ LLY   +R++E L+L   +I    D   +R+ GKG K R+V +     
Sbjct: 143 SRMGLRDRTIMILLYDSAVRLAEILNLRVNDICLNQDNPYIRVMGKGSKERVVAINIKTV 202

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKP--LNPGVFQRYIRQL-----RRYLGLPLST 260
           K + +Y D+     N +  L  +  I+G+   ++ G  +R+I+Q           +PL  
Sbjct: 203 KHVNQYLDVYRSRDNPDSNLLFYTVIKGRAGKMSEGNVERFIQQYADKARESCPDIPLRV 262

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
             H LR + AT+L  NG +L  I  ILGH  L TT++Y    +K     M E  D     
Sbjct: 263 YPHMLRRTRATNLYQNGIELALISRILGHAFLDTTRVYY---AKPSLAMMREAMDSVEAP 319

Query: 321 ITQKDK 326
            T+++K
Sbjct: 320 QTREEK 325


>gi|253681402|ref|ZP_04862199.1| putative integrase/recombinase [Clostridium botulinum D str. 1873]
 gi|253561114|gb|EES90566.1| putative integrase/recombinase [Clostridium botulinum D str. 1873]
          Length = 274

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 124/269 (46%), Gaps = 27/269 (10%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T+ SY  D  QF  +L      K  +  I+     E + F+   +  KI  +++ R 
Sbjct: 18  SEKTIDSYIRDISQFNDYLK---TNKKKLAKIKISDIDEFKNFLIYHKELKI--KTINRK 72

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L  IK +LK+     I+ +   +    ++  N L   L+ +     ++N++  T  +   
Sbjct: 73  LVSIKQYLKF---NNISVD---IKQEKVQMQNFLDDMLSNQD----IENIIKATYAKD-- 120

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
            D R   I+Y LY  G+R+SE L LT  +    +S++ I GKG K R V  +P+  K I 
Sbjct: 121 -DLRARTIIYTLYYTGMRVSEMLQLTIYDTK--KSSISIIGKGSKHREV-FVPNKLKTIW 176

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFA 270
           + Y      + +     LF G RG P+N       I+      G+  S   AH  RH + 
Sbjct: 177 DNY----LQVRIKKSTALFTGKRG-PINRKTVDSIIKTYAEAAGVDKSKAHAHNFRHLYC 231

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            +L   G D+ +I  I GH  ++TT+IYT
Sbjct: 232 KNLADRGIDISTIADIAGHQNINTTRIYT 260


>gi|332088977|gb|EGI94089.1| integrase [Shigella boydii 5216-82]
          Length = 337

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 105/237 (44%), Gaps = 31/237 (13%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT-TESNILNMRNLKKSN 123
           Q++ + I  + + RR+Q I   S+ R L+ I      L + ++   E  I   + LK+  
Sbjct: 100 QITKSLISQYCATRRSQGIKPSSINRDLTCISGMFTALIEAELYFGEHPIRGTKRLKEEK 159

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
                L +++   L+             +D  N  I  L    G R  EA  L  +NI+ 
Sbjct: 160 PNTGYLTQEEIALLLAA-----------LDGDNKKIAILCLSTGARWGEAARLKAENIIH 208

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           ++ T  ++ K +K R VP+  +V K I +                  RG      +   F
Sbjct: 209 NRVTF-VKTKTNKPRTVPISEAVAKMIADNK----------------RGFLFPDADYPRF 251

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +R ++ ++    LP+    H LRHSFATH + NGG + ++Q ILGH R+  T +Y +
Sbjct: 252 RRTMKAIKP--DLPMGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAH 306


>gi|254787261|ref|YP_003074690.1| site-specific recombinase, phage integrase family [Teredinibacter
           turnerae T7901]
 gi|237687132|gb|ACR14396.1| site-specific recombinase, phage integrase family [Teredinibacter
           turnerae T7901]
          Length = 317

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 138/307 (44%), Gaps = 36/307 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQTIRQLSYTEIRAFISKRR 79
           +L   +  + LS  ++++YE D + FL+ +      EKI  + I +        F+    
Sbjct: 10  FLDYCQYTKKLSHHSIRAYERDLQTFLVVVGRRARLEKIDRKIITK--------FVDACF 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALN--EKQALT 136
              +   ++KR L+ +K+  K+L+  +I  +S        ++  + LPR L+  E   L 
Sbjct: 62  ADGLSHATVKRRLACLKALFKWLENEEILDDSPFRKFELKVRLPHRLPRNLSVQELNKLL 121

Query: 137 LVDNVLLHTSHETKWIDARNSAI-------------LYLLYGCGLRISEALSLTPQNIMD 183
            +    L     + +     +++             + LL+  G+R+ E   +  Q+I  
Sbjct: 122 RICRSRLGLPKNSDYRVGEFASVSRSNLNHLTTLVCVELLFTTGVRVGELTGIRLQDIYL 181

Query: 184 DQSTLRIQGKGDKIRIVPLL-PSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPL 238
            +  + I+GKG + R V +   S+R  I  Y  L     P D NL +        RG+P 
Sbjct: 182 QEKFIHIRGKGQRERRVFVTDKSIRNLIESYIQLRKITTPIDQNLLV------NSRGRPA 235

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              + + +++   +   L    T H  RHS AT LL+NG D+  +Q +LGH  +STTQIY
Sbjct: 236 TSQMVRIWLKNCSKAANLTRVATPHMYRHSTATELLNNGVDIIYVQKLLGHQSISTTQIY 295

Query: 299 TNVNSKN 305
            +V+  +
Sbjct: 296 AHVSHSD 302


>gi|255616612|ref|XP_002539765.1| conserved hypothetical protein [Ricinus communis]
 gi|223502581|gb|EEF22619.1| conserved hypothetical protein [Ricinus communis]
          Length = 117

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 41/91 (45%), Positives = 55/91 (60%), Gaps = 4/91 (4%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LF   RG+P+    F   I+      GLP   + HTLRH+FATHLL++G DLR +Q +LG
Sbjct: 29  LFPNRRGEPMTRQAFWYRIKHYALLAGLPKLPSPHTLRHAFATHLLNHGADLRVVQLLLG 88

Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           H  LSTTQIYT+V        +  +++Q HP
Sbjct: 89  HADLSTTQIYTHVAQAR----LKSLHEQHHP 115


>gi|300901301|ref|ZP_07119398.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|300355266|gb|EFJ71136.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
          Length = 337

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 104/237 (43%), Gaps = 31/237 (13%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSN 123
           Q++ + I  + + RR+Q I   S+ R L+ I   F   ++      E  I   + LK+  
Sbjct: 100 QITKSLISQYCATRRSQGIKPSSINRDLTCISGMFTALIEAELFFGEHPIRGTKRLKEEK 159

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
                  E   LT  +  LL  +     +D  N  I  L    G R  EA  L  +NI+ 
Sbjct: 160 P------ETGYLTQEEIALLLAA-----LDGDNKKIAILCLSTGARWGEAARLKAENIIH 208

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           ++ T  ++ K +K R VP+  +V K I +                  RG      +   F
Sbjct: 209 NRVTF-VKTKTNKPRTVPISEAVAKMIADNK----------------RGFLFPDADYPRF 251

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +R ++ ++    LP     H LRHSFATH + NGG + ++Q ILGH R+  T +Y +
Sbjct: 252 RRTMKAIK--PDLPTGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAH 306


>gi|168789050|ref|ZP_02814057.1| integrase [Escherichia coli O157:H7 str. EC869]
 gi|261225024|ref|ZP_05939305.1| integrase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257629|ref|ZP_05950162.1| integrase [Escherichia coli O157:H7 str. FRIK966]
 gi|331678036|ref|ZP_08378711.1| integrase [Escherichia coli H591]
 gi|189371222|gb|EDU89638.1| integrase [Escherichia coli O157:H7 str. EC869]
 gi|320172729|gb|EFW47964.1| Integrase [Shigella dysenteriae CDC 74-1112]
 gi|323944901|gb|EGB40966.1| phage integrase [Escherichia coli H120]
 gi|324118070|gb|EGC11969.1| phage integrase [Escherichia coli E1167]
 gi|331074496|gb|EGI45816.1| integrase [Escherichia coli H591]
          Length = 337

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 104/237 (43%), Gaps = 31/237 (13%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSN 123
           Q++ + I  + + RR+Q I   S+ R L+ I   F   ++      E  I   + LK+  
Sbjct: 100 QITKSLISQYCATRRSQGIKPSSINRDLTCISGMFTALIEAELFFGEHPIRGTKRLKEEK 159

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
                  E   LT  +  LL  +     +D  N  I  L    G R  EA  L  +NI+ 
Sbjct: 160 P------ETGYLTQEEIALLLAA-----LDGDNKKIAILCLSTGARWGEAARLKAENIIH 208

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           ++ T  ++ K +K R VP+  +V K I +                  RG      +   F
Sbjct: 209 NRVTF-VKTKTNKPRTVPISEAVAKMIADNK----------------RGFLFPDADYPRF 251

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +R ++ ++    LP     H LRHSFATH + NGG + ++Q ILGH R+  T +Y +
Sbjct: 252 RRTMKAIKP--DLPTGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAH 306


>gi|291525804|emb|CBK91391.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 261

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 128/267 (47%), Gaps = 27/267 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N+++    ++ L   TL++Y+ D RQF         E+I+I  I  ++ + + ++I+  
Sbjct: 9   KNYIEYCTAQKRLDTKTLKAYKIDLRQF--------SEQISITEIEYITTSVLESYITNL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN-----LKKSNSLPRALNEKQ 133
             Q+   +S+KR ++ IK+F  YL+ + I     ILN  N      ++   LP+ +  K 
Sbjct: 61  H-QQYSPKSVKRKIASIKAFFHYLEYKDII----ILNPFNKLQIKFREPVILPKTIPLK- 114

Query: 134 ALTLVDNVLLHTSHET-----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
            L ++ N      H+T     K    R+ A+L LL+  G+RISE  S+  QN+    + +
Sbjct: 115 TLEVLFNAAYAKYHKTTSPCQKRKTLRDIAVLELLFATGIRISELCSILLQNMDLQNNII 174

Query: 189 RIQGKGDKIRIVPLL-PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
            I GKG K R++ +  P+V   + +YY    +   ++     F    G  L+    +  I
Sbjct: 175 LIHGKGSKERLIHICDPNVLNILNQYYT--EYYSQISACGYFFVNNTGNRLSDQSVRDMI 232

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLL 274
            +  R   +    T H  RH+FA ++L
Sbjct: 233 NKYCRIADIDYHITPHMFRHTFAMNIL 259


>gi|169826673|ref|YP_001696831.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41]
 gi|168991161|gb|ACA38701.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41]
          Length = 275

 Score = 75.9 bits (185), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 4/151 (2%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI+  L   G R+SE  +L  ++I  D+ T  + GKG+KIR +        A+  Y 
Sbjct: 119 RDRAIILFLLTSGCRVSEMSALNIKDINMDKHTAEVVGKGNKIRTIHFSLECAIALQNYL 178

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                D     + PLF    G  L  G  +  ++++ +  GL      H  RH+FAT+LL
Sbjct: 179 QARTCD----PKEPLFMNKFGDRLLNGGIRGVLKKVGKQAGLEKIFHPHCCRHTFATNLL 234

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           + G DL+ I   +GH  L+TT+IY  + S++
Sbjct: 235 ARGADLQFIADEMGHADLNTTRIYAQIPSED 265


>gi|149200178|ref|ZP_01877201.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149136715|gb|EDM25145.1| phage integrase [Lentisphaera araneosa HTCC2155]
          Length = 328

 Score = 75.9 bits (185), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 106/224 (47%), Gaps = 33/224 (14%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++K    G+  F KY+  R    E N   +  ++  + LP  L +K+    + +VL   S
Sbjct: 67  TVKSDRCGLAFFYKYVLSR----EFNWGKIIRIQTVHKLPSVLTQKE----IAHVL---S 115

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS 205
           +  +W   R+   L  +Y  GLR+SEAL + P +I  ++  L I+  KG + R+VPL P 
Sbjct: 116 YVKRW---RHRVCLTAIYSMGLRVSEALKMRPSDICVERKILHIRNSKGCRDRLVPL-PD 171

Query: 206 VRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKP--------LNPGVFQRYIRQLRRYLG 255
           +   ++        D  L+ + P  +F  IR K         +  G  Q   R      G
Sbjct: 172 LSLQMIN-------DFWLSHRSPNYIFPQIRDKSNMVNIDKHMYIGAVQGAFRMAVLESG 224

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           +    + H LRHS+ATH++  G  + +IQ ILGH  + TT IY 
Sbjct: 225 IMKRVSVHNLRHSYATHMMEKGVPIMAIQEILGHRDIKTTMIYA 268


>gi|38637723|ref|NP_942697.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527061|gb|AAP85811.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 336

 Score = 75.9 bits (185), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 81/155 (52%), Gaps = 6/155 (3%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
            R++ +L +LY  G R+ E + L   ++ +D  + +R+ GKG K R VPL+ S  + +L+
Sbjct: 146 CRDAVMLSVLYDTGARVQELIDLNAGDVRLDPPAQVRLMGKGRKPRAVPLMDSTVELLLQ 205

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLN-PGV---FQRYIRQLRR-YLGLPLSTTAHTLRH 267
           Y      D       PLF+  +G  L+  GV    Q+Y+  +RR +       + H+LRH
Sbjct: 206 YRRDNHLDRPEYADKPLFQNRQGTRLSRSGVRYLLQKYVIPVRRSHPDFTQRVSPHSLRH 265

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +   HLL +G  L  I+  LGH  + TT+IY   N
Sbjct: 266 TKGMHLLQSGVPLEIIRDFLGHVDVKTTEIYARAN 300


>gi|254162098|ref|YP_003045206.1| integrase [Escherichia coli B str. REL606]
 gi|253973999|gb|ACT39670.1| integrase [Escherichia coli B str. REL606]
          Length = 337

 Score = 75.9 bits (185), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 104/237 (43%), Gaps = 31/237 (13%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSN 123
           Q++ + I  + + RR+Q I   S+ R L+ I   F   ++      E  I   + LK+  
Sbjct: 100 QITKSLISQYCATRRSQGIKPSSINRDLTCISGMFTALIEAELFFGEHPIRGTKRLKEEK 159

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
                  E   LT  +  LL  +     +D  N  I  L    G R  EA  L  +NI+ 
Sbjct: 160 P------ETGYLTQEEIALLLAA-----LDGDNKKIAILCLSTGARWGEAARLKAENIIH 208

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           ++ T  ++ K +K R VP+  +V K I +                  RG      +   F
Sbjct: 209 NRVTF-VKTKTNKPRTVPISEAVAKMIADNK----------------RGFLFPDADYPRF 251

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +R ++ ++    LP     H LRHSFATH + NGG + ++Q ILGH R+  T +Y +
Sbjct: 252 RRTMKAIK--PDLPTGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAH 306


>gi|302035314|ref|YP_003799985.1| class 3 integrase Int3 [Escherichia coli]
 gi|28207197|gb|AAO32355.1| IntI3 integrase [Klebsiella pneumoniae]
 gi|262234436|gb|ACY39221.1| Int3 [Escherichia coli]
          Length = 346

 Score = 75.9 bits (185), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 94/184 (51%), Gaps = 39/184 (21%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV----PLLPSVRKAILEYYDL 216
           LLYG GLR+ EAL L  +++  D+  + ++ GKGDK R+V     L+P +R  +++   +
Sbjct: 148 LLYGSGLRLREALGLRVKDVDFDRHAIIVRSGKGDKDRVVMLPRALVPRLRAQLIQVRAV 207

Query: 217 CPFDLNLN---IQLP------------------LFRGIRGKPLNP--GVFQRYI------ 247
              D       + LP                  +F   +   ++P  GV +R+       
Sbjct: 208 WGQDRATGRGGVYLPHALERKYPRAGESWAWFWVFPSAK-LSVDPQTGVERRHHLFEERL 266

Query: 248 -RQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            RQL++ +   G+    + HTLRHSFATHLL  G D+R++Q +LGH  +STT IYT+V  
Sbjct: 267 NRQLKKAVVQAGIAKHVSVHTLRHSFATHLLQAGTDIRTVQELLGHSDVSTTMIYTHVLK 326

Query: 304 KNGG 307
              G
Sbjct: 327 VAAG 330


>gi|332292898|ref|YP_004431507.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170984|gb|AEE20239.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 274

 Score = 75.9 bits (185), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 99/204 (48%), Gaps = 19/204 (9%)

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           K  +  E ++ ++R       LP  L+  +    V ++L HT+      + ++ A L  +
Sbjct: 77  KEALRQEIDLSSLRPRSPQRVLPDILSTYE----VKSILHHTT------NLKHKAALTTI 126

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYY-DLCPFDL 221
           Y  GLR+ E + L    +   ++T+ I+  KG K R +P   S++  + +YY +  P D 
Sbjct: 127 YALGLRVGELVDLRLAAMDKKRNTITIKAAKGKKDRQLPFPESLKPLLRQYYKEYKPTDY 186

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
                  LF G           +   R   +   +    T H+LRH++ATHL+ +G DLR
Sbjct: 187 -------LFEGQSKPQYTAASLRSVFRASCKKARIKKKVTLHSLRHAYATHLMDSGTDLR 239

Query: 282 SIQSILGHFRLSTTQIYTNVNSKN 305
            IQ +LGH  + TT IYT+V +++
Sbjct: 240 MIQELLGHSDIKTTMIYTHVTTRS 263


>gi|282879915|ref|ZP_06288640.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1]
 gi|281306217|gb|EFA98252.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1]
          Length = 292

 Score = 75.9 bits (185), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 128/284 (45%), Gaps = 35/284 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L  E+  S LT+++Y  D   F  F               QLS+  I + I + 
Sbjct: 3   KEFLDYLRFEKNRSALTVKNYGKDLMAFEEFFRLLEP---------QLSWESIDSNIIRD 53

Query: 79  RTQKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             + + DR     S+ R LS ++SF ++   R +  +   + +   KK   LP+ + E +
Sbjct: 54  WMESMMDRGNNATSINRRLSALRSFYRFALTRGLVDKDPTITIVGPKKKKPLPQFVKESE 113

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
               +D +L       ++ D     ++   Y  G+R++E + L   +I     +L++ GK
Sbjct: 114 ----MDALLAFKLEVNQYKDVLAHTLVETFYCTGMRLAELIGLDEASIDFAHQSLKVLGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRR 252
            +K R +P    ++++ L+YY +   D  +  Q    F    G+ L          Q+R 
Sbjct: 170 RNKERYIPFGAELKES-LQYY-ISIRDQQVQRQSTAFFVDKDGQRLTHN-------QVRY 220

Query: 253 YLGLPLST-------TAHTLRHSFATHLLSNGGDLRSIQSILGH 289
            +   LST       T H LRH+FAT ++++G  L S+Q +LGH
Sbjct: 221 AVNKCLSTVTTLKKRTPHVLRHTFATAMMNHGAGLESVQQLLGH 264


>gi|120611395|ref|YP_971073.1| phage integrase family protein [Acidovorax citrulli AAC00-1]
 gi|120589859|gb|ABM33299.1| phage integrase family protein [Acidovorax citrulli AAC00-1]
          Length = 352

 Score = 75.9 bits (185), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 88/180 (48%), Gaps = 23/180 (12%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A L LLYG GLR +E L L    +  D   +R+ GKG K R+V L    R  I +Y 
Sbjct: 164 RDRAALELLYGAGLRSAELLGLHVAQV-PDAPGMRLMGKGAKERLVILGEHARYWIAQYK 222

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLN-----PGVFQRY-IRQLRRYLG-----LPLSTTAH 263
            +    L          G R    N      G+   Y   QLRR +G     + LS T H
Sbjct: 223 AVRRTLLGSG-------GHRATATNRLFVSTGIHPDYQYSQLRRMVGRYAAMVGLSLTPH 275

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
           +LRH+FA+HL  +   L++IQ +LGH  L+TT IY + + ++      ++ DQ HP   Q
Sbjct: 276 SLRHAFASHLYQHKAPLKTIQLLLGHEHLATTTIYVSRHFEDD----HKLLDQHHPRGGQ 331


>gi|149774736|gb|ABR28408.1| integrase [Delftia tsuruhatensis]
 gi|151500312|gb|ABS12091.1| integrase [Delftia acidovorans]
          Length = 346

 Score = 75.9 bits (185), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 94/184 (51%), Gaps = 39/184 (21%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV----PLLPSVRKAILEYYDL 216
           LLYG GLR+ EAL L  +++  D+  + ++ GKGDK R+V     L+P +R  +++   +
Sbjct: 148 LLYGSGLRLREALGLRVKDVDFDRHAIIVRSGKGDKDRVVMLPRALVPRLRAQLIQVRAV 207

Query: 217 CPFDLNLN---IQLP------------------LFRGIRGKPLNP--GVFQRYI------ 247
              D       + LP                  +F   +   ++P  GV +R+       
Sbjct: 208 WGQDRATGRGGVYLPHALERKYPRAGESWAWFWVFPSAK-LSVDPQTGVERRHHLFEERL 266

Query: 248 -RQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            RQL++ +   G+    + HTLRHSFATHLL  G D+R++Q +LGH  +STT IYT+V  
Sbjct: 267 NRQLKKAVVQAGIAKHVSVHTLRHSFATHLLQAGTDIRTVQELLGHSDVSTTMIYTHVLK 326

Query: 304 KNGG 307
              G
Sbjct: 327 VAAG 330


>gi|15866616|gb|AAL10406.1|AF416297_1 IntI3 integrase [Serratia marcescens]
 gi|801874|dbj|BAA08929.1| integrase [Serratia marcescens]
 gi|16902299|dbj|BAB71947.1| integrase [Serratia marcescens]
          Length = 346

 Score = 75.9 bits (185), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 94/184 (51%), Gaps = 39/184 (21%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV----PLLPSVRKAILEYYDL 216
           LLYG GLR+ EAL L  +++  D+  + ++ GKGDK R+V     L+P +R  +++   +
Sbjct: 148 LLYGSGLRLREALGLRVKDVDFDRHAIIVRSGKGDKDRVVMLPRALVPRLRAQLIQVRAV 207

Query: 217 CPFDLNLN---IQLP------------------LFRGIRGKPLNP--GVFQRYI------ 247
              D       + LP                  +F   +   ++P  GV +R+       
Sbjct: 208 WGQDRATGRGGVYLPHALERKYPRAGESWAWFWVFPSAK-LSVDPQTGVERRHHLFEERL 266

Query: 248 -RQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            RQL++ +   G+    + HTLRHSFATHLL  G D+R++Q +LGH  +STT IYT+V  
Sbjct: 267 NRQLKKAVVQAGIAKHVSVHTLRHSFATHLLQAGTDIRTVQELLGHSDVSTTMIYTHVLK 326

Query: 304 KNGG 307
              G
Sbjct: 327 VAAG 330


>gi|226349906|ref|YP_002777019.1| putative integrase/recombinase [Rhodococcus opacus B4]
 gi|226245821|dbj|BAH47088.1| putative integrase/recombinase [Rhodococcus opacus B4]
          Length = 399

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 134/293 (45%), Gaps = 22/293 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL + + WL     +RGL++ T+Q YE   R+FL+     T           L+ +++  
Sbjct: 109 LLDDYRRWLIE---DRGLAEATVQRYERSARKFLL-----TGSDAGSVDPTALTGSDVSG 160

Query: 74  FI-SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALN 130
           ++ ++     +G  ++K  ++ +++ L+YL    +T    S  +      +  S+PR   
Sbjct: 161 YLLAEAGRCSVG--AVKGRVAEMRALLRYLFVHGMTPTLLSGAIPPVAGWRETSIPRYFA 218

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
                    + LL T   +  + ARN A+L LL   GLR  E   L   +I      LR+
Sbjct: 219 RDDV-----DALLDTCDRSTALGARNFAMLMLLSMLGLRCIEIARLELDDIDWRSGHLRV 273

Query: 191 QGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           +GK  ++  +PL   V  A+  Y  D  P   + ++       IRG P  P +    +R+
Sbjct: 274 RGKARRLDTLPLPHEVGDAVAGYLRDGRPHTTDRHLFQTYRAPIRGIP--PDLLSDVVRR 331

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             +  GLP    AH LRHS AT LLS G  L  I  +L H  L+TT IY  V+
Sbjct: 332 ACKRAGLP-PAGAHRLRHSVATTLLSEGVALADISQVLRHHDLATTAIYAKVD 383


>gi|149199670|ref|ZP_01876702.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Lentisphaera araneosa HTCC2155]
 gi|149137187|gb|EDM25608.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Lentisphaera araneosa HTCC2155]
          Length = 424

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 83/264 (31%), Positives = 114/264 (43%), Gaps = 71/264 (26%)

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           ++L  +  F KY+ K  +   S  L     KK   LP  L        VD V    S  T
Sbjct: 173 QALCALVLFFKYILKCDLGDVSGSLRS---KKDVRLPVVLT-------VDEVREILSAST 222

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRK 208
                +   ++ L+YG GLR SE L L  +++   + +L I+ GKG+K R   L   +++
Sbjct: 223 ----GKEQLMMKLIYGGGLRKSECLRLRIKDLDFSRGSLNIRDGKGNKDRQTLLSRDLKE 278

Query: 209 AILEYYDLCPFDLNLNIQLPLFRG---------------IRGKP---------------- 237
            I         D +LN    LF                 I+  P                
Sbjct: 279 QI---------DCHLNEVRKLFEIDRESEVAGVFLPNALIKKYPNAGRKWAWFWLFPSEK 329

Query: 238 --LNPGVFQRYIRQ-------LRRYL-------GLPLSTTAHTLRHSFATHLLSNGGDLR 281
             ++P   Q+ IR+       L R+L       G+    T HTLRHSFATHLL  G DLR
Sbjct: 330 LSIDPMTSQKTIRRHHNSGQMLSRFLKATCEDLGIKKQCTVHTLRHSFATHLLERGTDLR 389

Query: 282 SIQSILGHFRLSTTQIYTNVNSKN 305
           +IQ +LGH  +STTQIYT+V S N
Sbjct: 390 TIQELLGHEDISTTQIYTHVLSLN 413


>gi|320333377|ref|YP_004170088.1| integrase family protein [Deinococcus maricopensis DSM 21211]
 gi|319754666|gb|ADV66423.1| integrase family protein [Deinococcus maricopensis DSM 21211]
          Length = 297

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 130/284 (45%), Gaps = 15/284 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q++  +L+++R  SK TL  Y+   R     LA + EE+    T   L+ +++R F+   
Sbjct: 8   QHFAYHLKVKR-RSKNTLNFYDVTRRT----LARFLEEQGVEATTDTLTVSQLRGFLVWL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ-ALTL 137
             Q +G   +      +++   + ++ ++ +       RNL     LP   +E+Q A+T 
Sbjct: 63  EEQGLGPGGIHAHARALRALFNWAEREELVS-------RNLASRLELPSLPHERQPAITS 115

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L  + +      R++A+L  L+  G+R+ E + L  ++++ ++  +R+ GKG+K 
Sbjct: 116 ERLWKLLGACKGAGQQLRDTAMLLTLFDTGVRVHELIGLKVEDLLFERGLIRVVGKGNKE 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R VP+      A   Y        +  + L +F    G+ +        + +L +  G+ 
Sbjct: 176 RFVPIGSKAMSATSAYLRRERKQQHPGV-LHVFLSRSGEAMTRSGVSIRLAKLAKNTGIE 234

Query: 258 LSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               A H  R  FA   L NGGD+ ++Q I+GH  L  T+ Y  
Sbjct: 235 REVCAPHAFRRGFAVEFLRNGGDVFTLQQIMGHSSLDMTRRYVT 278


>gi|227461186|gb|ACP39540.1| putative integron integrase [uncultured microorganism]
          Length = 318

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 124/276 (44%), Gaps = 52/276 (18%)

Query: 64  RQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           R +   E+ AF++   T+  +   +  ++LS +    + + K ++    N++     K+ 
Sbjct: 57  RDMGEREVEAFLTVLATKGNVAAGTQNQALSALLFLYREVPKLELPWMENVVRA---KRP 113

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             +P  L+ ++        LL       W+ A       LLYG G+R+ E + L  +++ 
Sbjct: 114 RRIPAVLSREEV-----TRLLAALEGPAWLMA------ALLYGTGMRLMECIRLRIKDVD 162

Query: 183 DDQSTLRIQ-GKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQ---LP------ 228
            D+  + ++ GKG K R VPL      S+R AI     L   DL   +    LP      
Sbjct: 163 FDRGEIVVRNGKGGKDRRVPLPLRLRESLRAAIEHACLLHASDLADGLGEAWLPHALARK 222

Query: 229 ------------LF----RGI-------RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
                       +F    R +       R   ++  V QR +R  R+   +    T HTL
Sbjct: 223 YPNAARETGWQYVFPSPQRSVDPRSGKTRRHHVDDSVLQRAVRSARKLAMIDKPATCHTL 282

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           RHSFATHLL  G D+R++Q +LGH  ++TT IYT+V
Sbjct: 283 RHSFATHLLEAGHDIRTVQELLGHKDVATTMIYTHV 318


>gi|259909532|ref|YP_002649888.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224965154|emb|CAX56686.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 344

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 123/254 (48%), Gaps = 18/254 (7%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLVD 139
           + +  R+ + +L  ++ + ++L K+ +   +   ++   +    LPR  L+ +Q   +V+
Sbjct: 98  EPLSPRTQRTALQPLQVWFRWLAKQNLILANPAADLELPRLEKHLPRTILSVEQVEDIVN 157

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR 198
              L+T         R+ A+L LL+  G+R  E   L   +    +  L I QGKG + R
Sbjct: 158 LCDLNTLQ-----GMRDRALLELLWSTGIRRGEVARLETWSADFSRKILTIVQGKGKQDR 212

Query: 199 IVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLF---RGIRGKPLNPGVFQRYIRQLRRYL 254
           ++P+       +  Y +++ P  + +     LF    G+ G   N G+    +  LR   
Sbjct: 213 VIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVAGLTAN-GITHAVVPYLR-AA 270

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+    + H  RH+ AT +L NG DLR IQ++LGH  + +TQIYT V+ K     +  ++
Sbjct: 271 GIE-KGSCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIKA----LQAVH 325

Query: 315 DQTHPSITQKDKKN 328
             THP+  + D ++
Sbjct: 326 ASTHPAEREADSEH 339


>gi|302670606|ref|YP_003830566.1| tyrosine recombinase XerD [Butyrivibrio proteoclasticus B316]
 gi|302395079|gb|ADL33984.1| tyrosine recombinase XerD [Butyrivibrio proteoclasticus B316]
          Length = 292

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 134/285 (47%), Gaps = 19/285 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           LE  +  S  T+ SY    R+ L  +A +   +  I +I  ++   +  +IS  + +   
Sbjct: 12  LETVKKASANTISSY----RRDLNRMASHMSNR-GITSIADITDDRLHGYISSMQEEHCA 66

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S+ RS+S I++F +YL +     ++   N+R  K + S PR +   +        LL 
Sbjct: 67  GSSIIRSVSSIRAFFRYLLENGNIQDNPAENIRTPKAARSAPRIMTSYEI-----EALLS 121

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            +     +  R+ AIL L+Y  GLR +E + L  +NI    + +R+   G+  R++P   
Sbjct: 122 QTFPNDALGKRDKAILELMYATGLRTTELVELELENIDMSLNCIRL---GEN-RVIPYGK 177

Query: 205 SVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
             ++A+ EY     D    D + ++Q  +F    G P++     + I+   +  G+    
Sbjct: 178 KAKEALNEYLLFARDEILSDNSASLQ-KVFVNYMGNPMSRQGLWKLIKTYVKRAGIDADI 236

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           T ++LRHSF  HL+ +G D+ ++Q ++G   LS    Y     KN
Sbjct: 237 TPYSLRHSFTMHLIESGADINAVQDMMGLSGLSALSQYRKAKGKN 281


>gi|258515435|ref|YP_003191657.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257779140|gb|ACV63034.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 349

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 123/288 (42%), Gaps = 31/288 (10%)

Query: 29  RGLSKLTLQSYECDTRQFLIFL--AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           R +S+ T+++Y+      + +L  + +T + ITI T           ++SK   Q    R
Sbjct: 29  REVSQNTVKAYKQALETLIKYLEDSGFTRDTITIGTFTPACIEGFMVWMSKE--QNCKPR 86

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN----VL 142
           +    LS IK+FL+Y     IT ES  ++   L+    LP     K+ +  + N     +
Sbjct: 87  TCNLRLSAIKTFLRYCGHHVITNES--ISREVLE----LPMKKVRKEKIEYMSNGATAAI 140

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-------MDDQSTLRIQGKGD 195
           ++     + I  RN A+L LLY    R+ E + +   ++        D +S + ++GKGD
Sbjct: 141 MNAPDNRRLIGRRNKAMLSLLYDSAARVQELVDIKVDDLYLNEKASADGESFVTLRGKGD 200

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL- 254
           K+R V L P   K I  Y  L  F    N   PLF   R   L P       R L+    
Sbjct: 201 KLRNVNLSPKTAKLIQSY--LNEFHPRENRGAPLFYTKRAGSLWPLSVDSVSRILKENAD 258

Query: 255 -------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                   +P     H LR S A HL   G  L  I  +LGH  ++TT
Sbjct: 259 KARLCVPDIPERIHCHLLRKSRAMHLYIAGVPLPVIMELLGHASMNTT 306


>gi|307821936|ref|ZP_07652168.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307823188|ref|ZP_07653418.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307824260|ref|ZP_07654486.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307825345|ref|ZP_07655564.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307733520|gb|EFO04378.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307734640|gb|EFO05491.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307735963|gb|EFO06810.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307736502|gb|EFO07347.1| integrase family protein [Methylobacter tundripaludum SV96]
          Length = 291

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 134/297 (45%), Gaps = 44/297 (14%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ  + ++ + R LS  T  SY    ++F  FL   + +  +++ +R+     +   IS 
Sbjct: 12  RQRMIDDMRM-RKLSPKTQASYIRVVKRFAGFLG-RSPDTASVEDLRRYQLHLVDHGISP 69

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    SL  +L+G    LK+L +  +     +  M  +   + LP  L+ ++   L
Sbjct: 70  I--------SLNATLTG----LKFLFETTLDRPELLTKMHPVHVPHKLPVVLSREEVARL 117

Query: 138 ---VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGK 193
              VDN+     H+T          L + YG GLR SE +SL   +I   + TLRI QGK
Sbjct: 118 IAAVDNL----KHQTA---------LSVAYGAGLRASEVVSLKVGDIDSQRMTLRIEQGK 164

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R   L P + + +  ++        +     LF G+   P++P       RQL R 
Sbjct: 165 GSKDRYAMLSPVLLERLRAWWKFAHAQGKMLQGGWLFPGL--DPIDP----LSTRQLNRA 218

Query: 254 LGLPLS-------TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +             + HTLRHSFATHLL    D+R IQ +LGH +L TT +Y  V +
Sbjct: 219 IHAAAEAARIDKRVSMHTLRHSFATHLLEQKVDIRVIQVLLGHKKLETTALYAQVAT 275


>gi|148380317|ref|YP_001254858.1| phage integrase [Clostridium botulinum A str. ATCC 3502]
 gi|148289801|emb|CAL83909.1| phage integrase [Clostridium botulinum A str. ATCC 3502]
          Length = 331

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 133/279 (47%), Gaps = 29/279 (10%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GLS  TL++Y+ +     IF     +  + I T+      ++R F++  R + +   S+ 
Sbjct: 70  GLSIKTLRNYQYN---LAIFANHLRKPLVAINTM------DLRMFLA-VRCKSMKQSSVN 119

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             +S +KSF  +L   +   ++    ++  K+   L  A+ E++        LL  + +T
Sbjct: 120 GQISILKSFFGWLADEEYIPKNPAKKLKQTKEPKRLRHAMTEEEI------ELLRQACKT 173

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
                R  A++  L   G R+SEA+ +   +I   + +L + GKGDK R V    +  K 
Sbjct: 174 D----REKALVEFLISTGCRLSEAVGVNKDDINWYEMSLNVIGKGDKERKV-YFSTKAKI 228

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKP---LNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           +L+ Y L   D N+     LF   + KP   L     QR I+++    G+  S   H  R
Sbjct: 229 LLKKYLLARSDENI----ALFVTSK-KPYGRLGGRSVQREIKKIASRAGINKSIYPHLFR 283

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           HSFAT+ L+ G  +  IQ ++GH   +TTQIY  ++ +N
Sbjct: 284 HSFATNKLNAGMPMPVIQHLMGHESPATTQIYAELSEEN 322


>gi|239828409|ref|YP_002951033.1| integrase [Geobacillus sp. WCH70]
 gi|239808702|gb|ACS25767.1| integrase family protein [Geobacillus sp. WCH70]
          Length = 292

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 137/288 (47%), Gaps = 22/288 (7%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEI 71
           ELL   + WL     E G +  T++SY  D + +  FL    E+ ++ Q  + + S+   
Sbjct: 3   ELLDAFKQWL----TEEGKAPKTIESYVGDIKSYQRFLG---EKAVSDQQPLSRFSFVRY 55

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN----LKKSNSLPR 127
           +  +     +     ++ + ++ +K +  +L+K+ I +ES I   R+       S  +  
Sbjct: 56  KQHLL---DEGFAVATINKKINSLKVYNDFLQKKGIVSESYIQLKRDRVQIAAGSEHVVT 112

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           AL+E++    V+ +L +    TK +  RN  I YLL   G+R+SE +++   +I    +T
Sbjct: 113 ALSEEE----VEKLLFYLEDRTK-VSLRNKLIAYLLLYTGVRVSELVNIKLTDIDVLTAT 167

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           L I+GKG K+R + L   + + I EY      +        L    R K ++    + ++
Sbjct: 168 LMIRGKGGKVREISLRQDLVQLIKEYQIGERQESRFRESEYLLVSQRSKKMHRDAVRNWL 227

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             + + +G+ L    H  RH+FAT LL  G DL ++  + GH  ++ T
Sbjct: 228 ANISKDIGIKLH--PHLFRHTFATRLLRKGVDLTTVSKLTGHSTVNMT 273


>gi|251789526|ref|YP_003004247.1| site-specific tyrosine recombinase XerC [Dickeya zeae Ech1591]
 gi|251789532|ref|YP_003004253.1| site-specific tyrosine recombinase XerC [Dickeya zeae Ech1591]
 gi|247538147|gb|ACT06768.1| integrase family protein [Dickeya zeae Ech1591]
 gi|247538153|gb|ACT06774.1| integrase family protein [Dickeya zeae Ech1591]
          Length = 369

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 7/169 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213
           R+ A++ LL+  G+R  E   L   ++   +  + I QGKG K R++P+     + +  Y
Sbjct: 168 RDRALMELLWSTGIRRGEVAVLEVYSVDASRHIVTIVQGKGKKDRVIPVGQRALRWLTYY 227

Query: 214 YDLCPFDLNLNIQLP-LFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
                  L +N   P LF  + G + L P      +    +  G+    + H  RH+ AT
Sbjct: 228 LQAVRPQLLVNPHCPALFVALDGIEGLTPNGITNLVSYYIKASGIAKWGSCHLFRHAMAT 287

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
            +L NG DLR IQ++LGH  + +TQIYT V+ +     +  ++  THP+
Sbjct: 288 QMLENGADLRWIQAMLGHASVESTQIYTQVSIRA----LQAVHASTHPA 332


>gi|307266069|ref|ZP_07547615.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918938|gb|EFN49166.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 291

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 139/291 (47%), Gaps = 36/291 (12%)

Query: 20  NWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLA-FYTEE---KITIQTIRQLSYTEIR 72
           +WL+  E E    G S+ T+ SY  D ++FL + +  Y +E   +I  Q +R     E R
Sbjct: 2   DWLEKFEEELKQTGKSQNTIISYCTDIKEFLKWFSDTYAKEFDGRILEQDVR-----EYR 56

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            ++      K+   S+ R ++ +K+F ++L +     E++I  +      +   R ++  
Sbjct: 57  NYLLN--IAKLKPSSINRKMAALKNFNQFLIQTGTGIEADICGISVADIHDREIRTISRN 114

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-------DDQ 185
           +   L   V           + R+ A++ LL G G+R+SE +SLT ++I        ++ 
Sbjct: 115 ELNRLKRAVYASG-------NKRDIALIELLIGTGVRVSELVSLTTEDIHLTARNGKENY 167

Query: 186 STLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           S + I+ GKG+K R +PL   V+KA+ EY          ++   +F G RG PL      
Sbjct: 168 SYIVIRNGKGNKYREIPLNSQVKKALEEY-----LVTRSHLSGRIFIGQRG-PLRRESVD 221

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           + I++  R  G+    +AH LRH+F T L+S    +  I  + GH  + TT
Sbjct: 222 KIIKKYCRMAGIE-EISAHVLRHTFCTRLMSENVPIPIISKLAGHSSIQTT 271


>gi|237752297|ref|ZP_04582777.1| integrase/recombinase XerD [Helicobacter winghamensis ATCC BAA-430]
 gi|229375786|gb|EEO25877.1| integrase/recombinase XerD [Helicobacter winghamensis ATCC BAA-430]
          Length = 355

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 118/261 (45%), Gaps = 17/261 (6%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           +I +++++ +    ++ F++   T  + D + K     + +F  ++ K+    +    N 
Sbjct: 89  QIDLESLKNVDEELLKEFLTIH-TSSLSDATKKNYRMALLNFFSFIDKQNEDEQGTSYNF 147

Query: 117 R---------NLKKSNSLPRALNEKQALTLVDNVLLHT-SHETKWIDARNSAILYLLYGC 166
           R           K    LP  +NE +    +D +   T  H+   + ARN  IL ++   
Sbjct: 148 RIELKNWGGLRGKSGQKLPSFMNENEVHRFIDGINNFTFKHQD--LGARNRLILKIIIYT 205

Query: 167 GLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
           G+R+ EAL L  ++IM D     ++++GKG+K R+V L        L+ +      +   
Sbjct: 206 GIRVGEALGLKLKDIMQDGEFYLIQVRGKGNKPRVVMLKSKNIHTDLQLWKSTRDTMQAE 265

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSI 283
             L LF   +GK L      R + Q+    G+      AH LRHSFAT L     DL  +
Sbjct: 266 EDL-LFCNHKGKKLTQAYISRIVEQVLVANGIRKEKNGAHMLRHSFATLLYQKSQDLVLV 324

Query: 284 QSILGHFRLSTTQIYTNVNSK 304
           Q  LGH  L T++IY + + +
Sbjct: 325 QEALGHASLDTSRIYMHFDKQ 345


>gi|254169467|ref|ZP_04876286.1| hypothetical protein ABOONEI_2736 [Aciduliprofundum boonei T469]
 gi|197621584|gb|EDY34180.1| hypothetical protein ABOONEI_2736 [Aciduliprofundum boonei T469]
          Length = 222

 Score = 75.5 bits (184), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 81/152 (53%), Gaps = 11/152 (7%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----QGKGDKIRIVPLLPSVR 207
           ++ARN A+L LL+  G+RI EA++L   +I     +L I     GKG+K RIVPL P V 
Sbjct: 39  VNARNRALLNLLFATGIRIGEAIALNWNDIDLTNPSLPILHIRHGKGEKKRIVPLPPKVL 98

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYLGLPLSTTAHTLR 266
           K +++Y +    + + N    +F    G+  +P  F R I ++     G+P    AH  R
Sbjct: 99  KMLIDYKEKYRINSDPNA---IFTTPHGRITHP--FARKICKEAGELAGVP-QFHAHAAR 152

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           H  A   L +G +L +I+  LGH  L TTQ Y
Sbjct: 153 HWRAIAWLKDGVNLETIRRFLGHSSLKTTQRY 184


>gi|212715402|ref|ZP_03323530.1| hypothetical protein BIFCAT_00297 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661708|gb|EEB22283.1| hypothetical protein BIFCAT_00297 [Bifidobacterium catenulatum DSM
           16992]
          Length = 276

 Score = 75.5 bits (184), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 103/236 (43%), Gaps = 42/236 (17%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            +S    Q     +LK   + + SF   L++  +  ++   ++  +K+  + PR   +K 
Sbjct: 59  LVSWMAGQHWKPETLKAYRNTLTSFFGRLQRTSVRPDNPAADLPKVKRPKAHPRPCPDKY 118

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQ 191
            L  +              D   + +L L   CGLR  E   +  +++MDD    +L ++
Sbjct: 119 ILAALAKA-----------DETETLMLRLAAECGLRRGEIAGVNSRDVMDDLLGKSLIVR 167

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKGDK RIVPL   + +AI    + C                 G  L PG +Q ++ +  
Sbjct: 168 GKGDKQRIVPLPDDLAEAI----ESC-----------------GGWLFPGRWQGHVEE-- 204

Query: 252 RYLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            Y+G      LP    AH+LRH +AT   +   DL  +  +LGH  + TTQIY  +
Sbjct: 205 SYVGKRISRLLPEGYGAHSLRHRYATATYAATHDLYLVARLLGHASVETTQIYVAM 260


>gi|257093411|ref|YP_003167052.1| integron integrase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257045935|gb|ACV35123.1| integron integrase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 340

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 127/287 (44%), Gaps = 66/287 (22%)

Query: 74  FISKRRTQKIGDRSLKRSLSGI--------------KSFLKYLKKRKITTESNILN-MRN 118
           F  KR  Q++G R ++  L+ +              KS L +L K  + T+   L+ + +
Sbjct: 55  FHGKRHPQEMGAREVETFLTHLAVEGRVSASTQNQAKSALLFLYKEVLRTDLPWLDDVES 114

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            K    LP  L  ++   L+             I+     IL LLYG G+RI E L L  
Sbjct: 115 AKSGKRLPVVLTPEEVQRLLGP-----------IEGTTGLILRLLYGTGMRIMECLRLRV 163

Query: 179 QNI-MDDQSTLRIQGKG--DKIRIVP--LLPSVRKAILEYYDLCPFDLNL---NIQLP-- 228
           +++    +  L  +GKG  D++ ++P  L+  + + +     L   DL+    ++ LP  
Sbjct: 164 KDVDFARREILVREGKGFKDRVTMLPEKLMAPLGEHLARVKALHAADLSAGFGDVYLPWA 223

Query: 229 ----------------LFRGIRGKPLNP--GV----------FQRYIRQLRRYLGLPLST 260
                           +F   R +P++P  G            QR + Q  R  G+    
Sbjct: 224 LERKYPNAAREWAWQYVFVAAR-RPVDPRSGAVRRHHVEAQSIQRAMHQALRVAGVSKPA 282

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSIL-GHFRLSTTQIYTNVNSKNG 306
           T HTLRHSFAT LL  G D+R++Q +L GH  +STT IYT+V  + G
Sbjct: 283 TPHTLRHSFATSLLETGYDIRTVQELLVGHSDVSTTMIYTHVLKRGG 329


>gi|89147414|gb|ABD62567.1| integrase [uncultured bacterium]
          Length = 163

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 45/64 (70%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           LN    QR +++  R  GL    T HTLRHSFATHLL NG D+R++Q +LGH  +STTQI
Sbjct: 99  LNETTMQRVMKEAVRTAGLTKPATCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTQI 158

Query: 298 YTNV 301
           YT+V
Sbjct: 159 YTHV 162


>gi|291557595|emb|CBL34712.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a]
          Length = 282

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 130/286 (45%), Gaps = 32/286 (11%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           ++N   +R L + T+Q Y  D   FL ++          + +  L+  +  +F++ +R +
Sbjct: 9   IRNEAEKRNLRERTIQLYCSDVSYFLRWIG---------KNVSDLTLEDAESFLTAKRLE 59

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                +     S IK FL Y K  KI  + + +    +K+  +LP  L+  +   ++D  
Sbjct: 60  GRSPETHNHYRSAIK-FL-YKKVLKILWDDDTVPA--MKRERNLPVVLSRDEINAIIDAT 115

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV 200
                      + ++ AI+  +Y  GLR+SE + L   +I     T+ + + KG   R  
Sbjct: 116 ----------PNLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGRIDRYT 165

Query: 201 PLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            L       + EY+  C  P D    I  P      G  L+     ++ ++  +  G+  
Sbjct: 166 ILSQKNLDLLTEYWYKCGRPKD----ILFP--SSWSGGYLDIASVNQFFKKSAKLAGINR 219

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             ++H  RHSFA+HL  +G D++ IQS+LGH    +T +Y +V++K
Sbjct: 220 HVSSHACRHSFASHLFESGTDIKYIQSLLGHVDPRSTDVYLHVSNK 265


>gi|297617958|ref|YP_003703117.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297145795|gb|ADI02552.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 280

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 130/272 (47%), Gaps = 16/272 (5%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           L++ T ++Y  D   F  + A    E +    +  +   E ++ +   R  K    ++ R
Sbjct: 10  LNRGTARAYREDLLDFSRWFAETNGESLEPHLVTSIDLKEYQSHMILNRGLKPA--TVNR 67

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            ++ I++++++ +++ +         R  +  ++ P+AL++++    +  V        K
Sbjct: 68  RMAAIRAWMRWCQEQGLIENLPRWPKRAAQVQHA-PKALSKREQERFLRAV-------EK 119

Query: 151 WIDARNSAILYLLYGCGLRISEA--LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
             + R+ A++ L+   GLR+ EA  + ++  +I D +  + I GKG K R VPL    R 
Sbjct: 120 EGNRRDVALIGLMLFAGLRVGEAARVRVSDVSISDRKGKVSITGKGMKHREVPLGFDARN 179

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRH 267
            + ++ +          Q  LF G  G  ++    Q  I++      + P   T H LRH
Sbjct: 180 MVRDWLN---HQAQHAQQEWLFPGQNGGHISARAVQHMIKKYAWQARIEPQKITPHVLRH 236

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           +FAT+LL +G DL ++ ++LGH RL TT  YT
Sbjct: 237 TFATNLLRDGVDLVTVAALLGHSRLDTTARYT 268


>gi|163855761|ref|YP_001630059.1| putative integrase/recombinase [Bordetella petrii DSM 12804]
 gi|163259489|emb|CAP41789.1| putative integrase/recombinase [Bordetella petrii]
          Length = 317

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 129/282 (45%), Gaps = 24/282 (8%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI---SKRRTQKIGDRSLKRSL 92
           + SY       L F+      KI    I  L + +I+AF+    + R   +  R+  + L
Sbjct: 1   MASYRDTFSILLRFMEHQAGVKIERICIADLHHKQIQAFLLWLEQDRGNSVNTRN--QRL 58

Query: 93  SGIKSFLKYLKK---RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           S I SF +++       I     ILN++  K+ +S    L+ +        +LL   +  
Sbjct: 59  SAITSFFRFVMSIYPEHILLCQQILNIQFKKRQSSTVDYLSIEAV-----ELLLQQPNAR 113

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRK 208
           K +  R+  +L +LY  G R+ E  ++   ++ +   +T R+ GKG K+R+VPLL     
Sbjct: 114 KPMGRRDLVLLSVLYDTGARVQELANMNVSDLKLTAPATARLLGKGAKVRLVPLLAPTTA 173

Query: 209 AILEYYDLCPFDLNLNIQLPLF-RGIRGKPLNPGV---FQRYIRQLRR----YLGLPLST 260
            ++ Y              PLF   +R +    G+    Q+Y R++ +     LG  +S 
Sbjct: 174 LLVSYLQEHHGQYLEQKDRPLFCNNVRKRLTRAGISYILQKYAREVSQGNPGLLGTKIS- 232

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             HTLRHS A HLL  G +L  I+ +LGH  + TT+IY   +
Sbjct: 233 -PHTLRHSKAMHLLQAGVNLIYIRDLLGHSDIKTTEIYARAD 273


>gi|290243122|ref|YP_003494792.1| integrase family protein [Thioalkalivibrio sp. K90mix]
 gi|288945627|gb|ADC73325.1| integrase family protein [Thioalkalivibrio sp. K90mix]
          Length = 322

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 92/174 (52%), Gaps = 7/174 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           RA+ E +    +D    H   +   I  R++A++ +LY  G+R SE + L   +++ ++ 
Sbjct: 131 RAVAEDE----MDCFTQHLERDRTPIGIRDAALVNVLYSTGMRRSEVVDLRIGDLVPEEK 186

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG--IRGKPLNPGVFQ 244
            + I+GKG++ R   +      A+  + D    + +  + LP+ RG  I+ + ++     
Sbjct: 187 AVLIRGKGNRERTGYMDDVAWDALNHWIDEVRGERDGPLFLPMARGGHIQWRRMSDQAVA 246

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           + +R+      +P  T  H +R SFAT LL NG DL ++Q ++GH  ++TTQIY
Sbjct: 247 KVVRERSMEAAMP-PTLPHDMRRSFATQLLDNGTDLLTVQRLMGHSSVTTTQIY 299


>gi|254422709|ref|ZP_05036427.1| integron integrase subfamily [Synechococcus sp. PCC 7335]
 gi|196190198|gb|EDX85162.1| integron integrase subfamily [Synechococcus sp. PCC 7335]
          Length = 302

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 54/285 (18%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK-SFLKYLKKRKITTE-SNILNMRN 118
           Q  +++  +EIRA++S   T     R +  S   +  S L +L ++ +  E   I N+  
Sbjct: 21  QHPKKMGASEIRAYLSHLATV----RHVAASTQTVALSALLFLYRQVLGIELPYIDNIER 76

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            K+   LP      + + ++ N           +D  N  ++ LLYG G+R+ E L L  
Sbjct: 77  AKRPQRLPVVFTRSEVMRILAN-----------LDGINHLVVSLLYGTGMRLMEGLRLRV 125

Query: 179 QNIMDDQSTLRIQ-GKGDKIR--------IVPLLPSVRKA-ILEYYDLC--------PFD 220
           ++I  +   + ++ GKG K R        I PL   ++KA  L   DL         P+ 
Sbjct: 126 KDIDFEYRHITVRDGKGKKDRHTLLPESVIQPLQHQLKKAKHLHEQDLAVGYGTVELPYA 185

Query: 221 LNLNIQL-------------------PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           L                         P  + +R   L     QR +++  +   +  +  
Sbjct: 186 LARKYPSAHKEWKWQFVFPSGKRSLDPRSKVVRRHHLYEQSVQRAVKKAIQKAEITKNGG 245

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
            HTLRHSFATHLL +G D+R++Q +LGH  + TT IYT+V +K G
Sbjct: 246 CHTLRHSFATHLLEDGYDIRTVQELLGHKDVKTTMIYTHVLNKGG 290


>gi|313607900|gb|EFR84054.1| tyrosine recombinase XerD [Listeria monocytogenes FSL F2-208]
          Length = 75

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 50/77 (64%), Gaps = 4/77 (5%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           F + ++ + +  G+    T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT+V 
Sbjct: 1   FWKILKGIAKESGIEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVT 60

Query: 303 SKNGGDWMMEIYDQTHP 319
                  + ++Y Q HP
Sbjct: 61  KLR----LKDVYKQFHP 73


>gi|315924314|ref|ZP_07920537.1| tyrosine recombinase XerC [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622385|gb|EFV02343.1| tyrosine recombinase XerC [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 355

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 127/260 (48%), Gaps = 42/260 (16%)

Query: 69  TEIRAFISKRRTQKI-GDRSLKRSLSGIKSFLKYLK---KRKITTESNILNMRNLKKSNS 124
            +I AF+     Q+  G+ + KR  + I++   YL    +  ++  +  L +  +K+ + 
Sbjct: 99  ADIYAFLGYASVQRGNGNTTRKRKTAAIRALYHYLTVVLQLDMSDPTQNLEVPKIKQRDP 158

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNS----AILYLLYGCGLRISEALSLTPQN 180
           +   L+E  A++L++            ID RN     AI+ L   CG+R+SE  +L  ++
Sbjct: 159 IYLTLDE--AMSLLN-----------AIDGRNKERDLAIVTLFLNCGMRLSELTNLRLKD 205

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL---------CPFDLNLNIQLPLFR 231
           I D+  TL I GKG+K R V L  +   A+  YY +            D  + +   LF 
Sbjct: 206 IQDE--TLHIVGKGNKERDVILNDACVNALEAYYPIRKQQIERIEAQSDKVVKVDDHLFL 263

Query: 232 GIRGKPLN----PGVFQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGG-DLRSIQS 285
             RG+ ++     G+  +YI +     GL  +  T H LRH+ AT +   G  D+R++Q 
Sbjct: 264 SSRGRGISNRMVEGMVHKYILKA----GLDANKITVHKLRHTAATLMYKYGQVDIRTLQK 319

Query: 286 ILGHFRLSTTQIYTNVNSKN 305
           +LGH  +STT+IYT++   +
Sbjct: 320 VLGHENVSTTEIYTHIEDDD 339


>gi|312869134|ref|ZP_07729308.1| phage integrase, N-terminal SAM domain protein [Lactobacillus oris
           PB013-T2-3]
 gi|311095380|gb|EFQ53650.1| phage integrase, N-terminal SAM domain protein [Lactobacillus oris
           PB013-T2-3]
          Length = 295

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 132/303 (43%), Gaps = 15/303 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L+  +G S  TL SY  D  Q   FL      K +      +   ++ A I++++
Sbjct: 7   KYLAYLKGSQGRSANTLMSYRRDLDQAAAFLQAQGVGKWSA-----VDQYQLLALIAEQK 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEKQALTLV 138
            +     ++ R LS ++ F +YL + +    + +  + N + +  LP   L E +     
Sbjct: 62  KRGRSPATINRQLSALRQFYRYLVRHQQLRFNPMELVDNQQLTEKLPPEILTEPEI---- 117

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL    +   +  R+ A+L +L   G+R+SE + L   ++  D   +R+   G + R
Sbjct: 118 -KQLLAAPDQAHALGKRDRALLAVLATTGMRVSELVDLLVTDLHLDIKMIRLGSGGRRER 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VP+     + + +Y       L    +  +F    G  L      + +R L R  G+  
Sbjct: 177 LVPISDQAVQELKQYLAAVRPLLVAEGEQAVFVNAHGHQLTRQGVWKNLRTLVRQAGIEK 236

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + T  TLR+SFA HLL +G D R IQ +LG+  L   + Y  +  +     +   Y Q  
Sbjct: 237 AVTPRTLRYSFAVHLLRSGADGRLIQEMLGYSELRAIKPYLKMTVQE----LSADYRQHQ 292

Query: 319 PSI 321
           P I
Sbjct: 293 PKI 295


>gi|198277427|ref|ZP_03209958.1| hypothetical protein BACPLE_03641 [Bacteroides plebeius DSM 17135]
 gi|198269925|gb|EDY94195.1| hypothetical protein BACPLE_03641 [Bacteroides plebeius DSM 17135]
          Length = 293

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 148/307 (48%), Gaps = 23/307 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           + ++L+ L +ER  S+ T+ SY  D  +F  +     EE         +    +R ++  
Sbjct: 3   KDSFLKYLLLERNYSEKTILSYGIDLDEFEAYFKSVDEEF----EFTSVDADVVRGWVLS 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +   + ++ R LS ++SF  YL ++K+     +  +   KK   LP  + ++    L
Sbjct: 59  LMDEGRAETTVNRKLSSLRSFYHYLLRQKLVAVDPVAKVVGPKKKKPLPVFVRDEAMNQL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D      + E      R+ A+L + Y  G+R +E ++L  +++      +++ GK +K 
Sbjct: 119 LDGFEFPQTFEG----VRDKAMLEVFYSTGMRRAELITLRDEDVDFSALVIKVTGKRNKQ 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR--GIRGKPLNPGVFQRYIRQLRRYLG 255
           R++P    +++ +  Y        +   +    R  G+R  P +      YI  ++RYL 
Sbjct: 175 RLIPFGDRLQEVLSAYLQERARFYSGECEAFFIRKSGVRLSPSSVN----YI--VKRYLS 228

Query: 256 LPLS---TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             ++    + H LRH+FAT +L++  +L +++ +LGH  L+TT++YT+   +     + +
Sbjct: 229 KVVTLKKKSPHVLRHTFATSMLNHQAELEAVKELLGHESLTTTEVYTHTTFEE----LKQ 284

Query: 313 IYDQTHP 319
           +Y+Q HP
Sbjct: 285 VYEQAHP 291


>gi|303242647|ref|ZP_07329121.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302589786|gb|EFL59560.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 340

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 138/298 (46%), Gaps = 26/298 (8%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFY------TEEKITIQTIRQLSYTEIRAFIS 76
           Q +  ERG S  ++ SY      F+++L +       + E+I +    + + T    ++ 
Sbjct: 16  QYMPNERGNSPQSIDSYRY---AFILYLEYMESVKKISAERIVLSDFTRETVTGYLNWLG 72

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKR---KITTESNILNMRNLKKSNSLPRALNEKQ 133
             R      R+  + L+ +K F+ YLK      +     IL +  LKK+     +  +  
Sbjct: 73  ASRENSPSTRN--QRLAALKGFVHYLKYEFPDYLDEYQRILGI-PLKKTQRKEISYMKTD 129

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQG 192
            + L+   +  T     W    +  IL +LY  G+R++E +++  ++I + +  T+RI G
Sbjct: 130 GVNLLVEQIDVTRTNGLW----DYVILLILYTTGIRVTELINVRVKDISLTEPYTIRIHG 185

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQRYIR 248
           KG+K R VPL+ +    I  Y +   +      +  LF+     P        V ++Y  
Sbjct: 186 KGNKGRYVPLMRTAVPHIKRYLETMGYANEARYEETLFKNHMKTPFTRQGINYVLKKYGI 245

Query: 249 QLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + +R     +P   +AH +RH+ A  L+++G DL  I+ +LGH  + TT+IY   ++K
Sbjct: 246 KAKRINSELIPNDLSAHKMRHTMAMELVTSGVDLMYIRDLLGHSSVVTTEIYARTDAK 303


>gi|13475204|ref|NP_106768.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025955|dbj|BAB52554.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 342

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 134/307 (43%), Gaps = 43/307 (14%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE------EKITIQTIRQLSYTEIR 72
           Q +L  L   RG+S+ T++SY       ++FL F T       E +TI  I         
Sbjct: 18  QEYLPTL---RGMSRHTIRSYRDG---MILFLGFATTDCRRPIESLTIADITADRVGRFL 71

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYL---KKRKITTESNILNMRNLKKSNSLPRAL 129
           A +   R   I  R+ +  L+ + +F ++L       + T   +L +   + +   P   
Sbjct: 72  ASLESERGNSIATRNTR--LAALHTFARFLIAETPEHMATLQQVLGIPFKRGARVAP--- 126

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTL 188
            E    T V+ +L     +T     R+ A+  L++  G R+ E + L  +++ ++    +
Sbjct: 127 IEYLETTEVEALLAGIDRKTP-AGRRDYAMFSLMFNTGARVQEVIDLRVRDVRLEPPHQV 185

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNP-GV 242
           R  GKG+KIR+ P+ P   + + E       D  P D ++      F   RG P+   GV
Sbjct: 186 RFTGKGNKIRLCPIWPRTAQLLKELIQKQTNDEDPADQHI------FLNGRGAPMTRFGV 239

Query: 243 FQRYIRQLRRYLGLPLSTT-------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             RY+ Q R   G  ++ T        H+LRH+ A HLL  G D  +I   LGH  L+TT
Sbjct: 240 --RYLLQKRVAAGAEVAPTLSDKRIHPHSLRHTTAIHLLKAGVDFVTISQWLGHASLNTT 297

Query: 296 QIYTNVN 302
             Y   +
Sbjct: 298 MRYARAD 304


>gi|16519919|ref|NP_444039.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
 gi|2497418|sp|P55634|Y4RA_RHISN RecName: Full=Putative integrase/recombinase y4rA
 gi|2182598|gb|AAB92467.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
          Length = 409

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 136/289 (47%), Gaps = 19/289 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q + ++L   R LS+ T+ +Y    R FL F   + + +I++  +R    T+   F+ K+
Sbjct: 119 QAYERHLRDARALSRQTIINYRPVVRDFLSFR--FGDGEISLAQLRAADVTD---FVQKK 173

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTE--SNILNMRNLKKSNSLPRALNEKQAL 135
              ++  R  K   + ++SFL Y + R  IT++  + +  + N   S S+PRA+      
Sbjct: 174 -VSRLNMRRAKIVTTALRSFLSYARYRGDITSDLAAAVPIVANWSLS-SIPRAIGRDDVS 231

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+ ++   T      I  R+ A++  L   GLR SE ++L   +I      +R++GK  
Sbjct: 232 RLLSSIDRDTP-----IGCRDYAMILALARLGLRSSEVVTLELDDIDWVAGRIRVRGKHG 286

Query: 196 KIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +  + PL   V +AI +Y +   P + +  + L     IRG  + P      +R+  +  
Sbjct: 287 RNEL-PLPADVGEAIADYLWRARPRNASRRVFLRDKAPIRGF-VGPSGLGSIVRRSLKRT 344

Query: 255 GLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           G+   T   H  RH  A+ +L  G  L  I  +LGH  + TT IY  V+
Sbjct: 345 GIDSPTKGTHQFRHGLASEMLRGGASLGEIGEVLGHRHVQTTAIYAKVD 393


>gi|322376586|ref|ZP_08051079.1| putative integrase/recombinase XerD [Streptococcus sp. M334]
 gi|321282393|gb|EFX59400.1| putative integrase/recombinase XerD [Streptococcus sp. M334]
          Length = 280

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 127/277 (45%), Gaps = 24/277 (8%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +S  T+++Y+ D  QF      Y  +           +  + ++I       I   +L+R
Sbjct: 1   MSSHTIRAYKNDLMQF------YNSD-----------HDNVESYIEHLTQSSIKTNTLRR 43

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-----SLPRALNEKQALTLVDNVLLHT 145
            ++ +K F  YLK + I  E+    +R   ++      ++P  + +   + L   V++  
Sbjct: 44  KIACMKVFYNYLKYQNIIEENPFNQLRFQFRTEKILPKTIPHDILKSIFIYLEQKVIVSK 103

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           +   K    RN  I+ LL   G+RISE   +  ++I     TL I GKG K RI+ L   
Sbjct: 104 TDYQKQHAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLHIIGKGKKERILFLGDQ 163

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
               +LE Y     + + +   P    +  KPL+    +  I+++        + T H  
Sbjct: 164 KTFNLLETYINKTRNESNDFLFPGKHSL--KPLSEQSVRLVIKRIVEQNNFSRTITPHMF 221

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           RHSFAT LL +  D+R IQ +LGH  +S TQIYT+V+
Sbjct: 222 RHSFATMLLDSDVDIRYIQQMLGHSSISITQIYTHVS 258


>gi|88856877|ref|ZP_01131529.1| phage-related integrase [marine actinobacterium PHSC20C1]
 gi|88813845|gb|EAR23715.1| phage-related integrase [marine actinobacterium PHSC20C1]
          Length = 333

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 130/300 (43%), Gaps = 34/300 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA------- 73
           +L+ L  +RG S  T++SY  D  + L    F   EK T  +   L   ++ A       
Sbjct: 16  FLRRLVDQRGASARTIESYR-DAFELL----FSYIEKRTGTSPSTLQMADLDAPLVLDFF 70

Query: 74  -FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR---KITTESNILNMRNLKKSNSLPRAL 129
            ++   R      R+++  L+ I SF++Y   R    +   S +L +   +    +   L
Sbjct: 71  DYLETERHNSARTRNVR--LAAIHSFMRYAAVRDPASLPITSRVLAIGAKRFDRPVLGYL 128

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTL 188
           + +Q        +L       W   R++ +L   Y  G R+SE  +L   +I+ D QS +
Sbjct: 129 SREQI-----TAILAAPDRNTWSGRRDAVMLATTYNTGARVSEITALRVSDILADRQSAV 183

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQRYI 247
            + GKG K R++PL  +    +  +       +N     P+F    G P++  GV  R  
Sbjct: 184 HLHGKGRKQRVIPLWKNTASDLRSWLG----RINTAPDAPVFPNKAGAPMSRSGVRDRLD 239

Query: 248 RQLR-RYLGLP----LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           R +     G P       + HTLRH+ A HLL +G DL +I   LGH   +TTQ Y   +
Sbjct: 240 RAVAIAEQGCPSLRGQHISPHTLRHATAMHLLQSGTDLATIALWLGHSSPATTQQYLEAD 299


>gi|229186070|ref|ZP_04313240.1| Tyrosine recombinase xerC [Bacillus cereus BGSC 6E1]
 gi|228597489|gb|EEK55139.1| Tyrosine recombinase xerC [Bacillus cereus BGSC 6E1]
          Length = 130

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 7/131 (5%)

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIR 248
           GKG K R +P     + A++ Y +     L    +     +F   +G PL     +  + 
Sbjct: 2   GKGKKQRYIPFGSYAQDALITYIENGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLN 61

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L +   L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+     +
Sbjct: 62  ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 117

Query: 309 WMMEIYDQTHP 319
            +  +Y + HP
Sbjct: 118 RLRSVYMKHHP 128


>gi|331007978|ref|ZP_08331026.1| Integron integrase IntI4 [gamma proteobacterium IMCC1989]
 gi|330418212|gb|EGG92830.1| Integron integrase IntI4 [gamma proteobacterium IMCC1989]
          Length = 323

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 121/287 (42%), Gaps = 67/287 (23%)

Query: 71  IRAFI---SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI---TTESNILNMRNLKKSNS 124
           I+AFI    KR   ++GD    R       FL YL   +    +T+   LN      +  
Sbjct: 31  IKAFIHFHDKRHPSELGDADAAR-------FLTYLAVERTVSSSTQRTALNALAFLYNRF 83

Query: 125 LPRAL--------NEKQA-LTLV---DNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           L + L        +++QA L +V   + V +  SH    ID +    + LLYG GLR  E
Sbjct: 84  LEKPLGSMAEFTRSKRQAKLPIVLSREEVKVLFSH----IDPKYKLAVGLLYGSGLRRIE 139

Query: 173 ALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI--------------LEYYDLC 217
            L L   ++      +RI  GKG K R+  L P +  AI              + Y + C
Sbjct: 140 CLRLRVNDVDFSHLQIRIWNGKGFKHRLTTLAPELIPAIKCQIERANAFLQEDITYPEYC 199

Query: 218 PF---------------DLNLNIQLPLFR--------GIRGKPLNPGVFQRYIRQLRRYL 254
                            +L      P +R         IR   ++     + I   R+  
Sbjct: 200 GVWLPDALARKYRNASKELGWQYLFPSYRLSIEPGTSNIRRHHMDESTLNKVIASARKRA 259

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            L    ++HTLRHSFATHLL +G D+R++Q  LGH  + TT+IYT+V
Sbjct: 260 KLGKPVSSHTLRHSFATHLLQSGADIRTVQQQLGHSDVKTTEIYTHV 306


>gi|159901727|ref|YP_001547973.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894766|gb|ABX07845.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 326

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 135/315 (42%), Gaps = 37/315 (11%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           PE    E L +R  W  N   +  L+  T   Y    R+   + A      + +  +  +
Sbjct: 4   PESEPIESLIDR--WWTNPGDD--LTAATRTRYRSALRRLCRWFAAAERRSLLLADLHPI 59

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SL 125
           S    R  +     Q     ++   LS I+++  +L  +     +    ++ +K++  S 
Sbjct: 60  SLAGYREALK----QTDAASTVNTHLSAIRTWCVWLVDQGYLATNPAQRLKLVKRTTPSA 115

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P+AL+         N LL  +  T++   RN+AIL +L   G+RISE  +L   +I   +
Sbjct: 116 PKALSPAHV-----NALLRQAQFTRY-PLRNTAILQVLIQTGMRISECAALCWHDIQYGE 169

Query: 186 ST---LRIQGKGDKIRIVPLLPSVRKAILEYYD--------------LCPFDLNLNIQLP 228
            +   L   GKG+ +R VPL  S R A+  Y                  P     + + P
Sbjct: 170 RSGHALIRAGKGNTVRTVPLNESARCALASYVAPLLGVQPSLHKVARAWPQRQEGDPRCP 229

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLG----LPLSTTAHTLRHSFATHLLS-NGGDLRSI 283
           L+   R   L+       I QL R       LP STT H+LRH+FAT  L+ +  DL  +
Sbjct: 230 LWTSERQHALSLREMSHMIHQLVRDTSARKLLPASTTPHSLRHTFATRYLARHPHDLVGL 289

Query: 284 QSILGHFRLSTTQIY 298
             +LGH  ++TTQIY
Sbjct: 290 ARLLGHRSITTTQIY 304


>gi|294340300|emb|CAZ88677.1| putative Phage integrase [Thiomonas sp. 3As]
          Length = 334

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 136/291 (46%), Gaps = 30/291 (10%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI----QTIRQLSYTEIRAFISKRRTQKI 83
           +R LS  T+ SY    R   + L  + E+K+ +     T+  LS   +  F+     Q+ 
Sbjct: 24  QRALSPRTVASY----RDTFVLLLRFAEDKLRLPAHGMTMTDLSARFLADFLDHLEAQRH 79

Query: 84  GD-RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN-- 140
              RS    L+ +++FLK+  +R      +  N+  ++ + ++P    E++ +  V +  
Sbjct: 80  NCVRSRNVRLAAVRAFLKFAARR------DPANLGVIENALAVPMKRFERRMVGFVPHEQ 133

Query: 141 --VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKI 197
              ++  + +T WI  R+  +L L++  G R+SE + +   ++ +   +++R+ GKG K 
Sbjct: 134 MLAVIDVASDT-WIGQRDRLMLTLMFNTGARVSEIIGVHVADVVLGPSNSIRLHGKGRKQ 192

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQRY-----IRQLR 251
           R +PL  S  +A+ ++  L P    L  + PL     G+ +    V QR      +  ++
Sbjct: 193 RSLPLWKSSARAVRDWLHLNP---QLGQESPLLPTRDGRAMTRANVAQRLKLAVKVASVK 249

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                 +S + H +RHS A  LL +G D   I   LGH   STT +Y   +
Sbjct: 250 HAQLKTMSVSPHIVRHSTAMSLLQSGVDPCEIALWLGHESPSTTHMYVEAD 300


>gi|310765754|gb|ADP10704.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 345

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 18/252 (7%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLVD 139
           + +  R+ + +L  ++ + ++L K+ +   +   ++   +    LPR  L+ +Q   +V+
Sbjct: 98  EPLSPRTQRTALQPLQVWFRWLAKQNLILANPAADLELPRLEKHLPRTILSVEQVEDIVN 157

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR 198
              L+T         R+ A+L LL+  G+R  E   L   +    +  L I QGKG + R
Sbjct: 158 RCDLNTLQ-----GMRDRALLELLWSTGIRRGEVARLESWSADFSRKILTIVQGKGKQDR 212

Query: 199 IVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLF---RGIRGKPLNPGVFQRYIRQLRRYL 254
           ++P+       +  Y +++ P  + +     LF    G+ G   N G+    +  LR   
Sbjct: 213 VIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVAGLTAN-GITHAVVPYLR-AA 270

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+    + H  RH+ AT +L NG DLR IQ++LGH  + +TQIYT V+ +     +  ++
Sbjct: 271 GIE-KGSCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRA----LQAVH 325

Query: 315 DQTHPSITQKDK 326
             THP+   +D+
Sbjct: 326 ASTHPAEQTEDE 337


>gi|307826955|ref|ZP_07656735.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307732373|gb|EFO03296.1| integrase family protein [Methylobacter tundripaludum SV96]
          Length = 277

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 104/224 (46%), Gaps = 30/224 (13%)

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL---VDNVLLHTSH 147
           SL+   + LK+L +  +     +  M  +   + LP  L+ ++   L   VDN+     H
Sbjct: 71  SLNATLTGLKFLFETTLDRPELLTKMHPVHVPHKLPVVLSREEVARLIAAVDNL----KH 126

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
           +T          L + YG GLR SE +SL   +I   + TLRI QGKG K R   L P +
Sbjct: 127 QTA---------LSVAYGAGLRASEVVSLKVGDIDSQRMTLRIEQGKGSKDRYAMLSPVL 177

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS------- 259
            + +  ++        +     LF G+   P++P       RQL R +            
Sbjct: 178 LERLRAWWKFAHAQGKMLQGGWLFPGL--DPIDP----LSTRQLNRAIHAAAEAARIDKR 231

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            + HTLRHSFATHLL    D+R IQ +LGH +L TT +Y  V +
Sbjct: 232 VSMHTLRHSFATHLLEQKVDIRVIQVLLGHKKLETTALYAQVAT 275


>gi|299538027|ref|ZP_07051313.1| hypothetical protein BFZC1_18515 [Lysinibacillus fusiformis ZC1]
 gi|298726609|gb|EFI67198.1| hypothetical protein BFZC1_18515 [Lysinibacillus fusiformis ZC1]
          Length = 278

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 124/267 (46%), Gaps = 32/267 (11%)

Query: 56  EKITIQTI--RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI 113
           E IT  +I  ++++  +IR ++     +     ++ + L G++ F KY  + ++   + +
Sbjct: 32  EMITYCSIPFQEITTRDIRKWLCHLEEKGRAPATISKKLFGLRLFYKYCLEEQLIAHNPV 91

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
             +R  + ++ +P  L   Q L L          ET   + R  AI+ +LY  G+R+SE 
Sbjct: 92  KAIRLPEINDRMPHYLLPNQLLLLQRMT------ET---NKRERAIVEVLYTTGVRLSEL 142

Query: 174 LSLTPQNIMDDQSTLRI-QGKGDKIRIV---PLLPSVRKAILEYYDL-CPFDLNLNIQLP 228
           +++  ++I   +  + I +GKG K RIV    +     +A L+  D  CP+         
Sbjct: 143 VAIQLKDIDWSERLIHIRKGKGKKARIVLFTRMCAEYLQAYLQERDSSCPY--------- 193

Query: 229 LFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           LF  +RG KPL     Q         LG+P S   HTLRH+FA HL   G  L  IQ++L
Sbjct: 194 LFLNMRGTKPLGVRGIQHKFSDYSEELGIPFS--PHTLRHTFAAHLAMKGMSLDCIQTLL 251

Query: 288 GHFRLSTTQIYT----NVNSKNGGDWM 310
           GH     TQIY     +   +    WM
Sbjct: 252 GHEDPHQTQIYARLYNHARKEQYDQWM 278


>gi|149377412|ref|ZP_01895156.1| integrase/recombinase (XerC/CodV family) protein [Marinobacter
           algicola DG893]
 gi|149358336|gb|EDM46814.1| integrase/recombinase (XerC/CodV family) protein [Marinobacter
           algicola DG893]
          Length = 330

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 136/317 (42%), Gaps = 63/317 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RGL+  T ++Y    R+F+ F      E         +   ++ AF+S    Q     + 
Sbjct: 27  RGLAYATEKTYVFWIRRFIRFHGRKHPET--------MGSADVEAFLSHLVLQANASVAT 78

Query: 89  KR-SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           +R +L+     L +L +  +    + LN    +K   LP   + ++A T ++N       
Sbjct: 79  QRVALNA----LIFLYREFMGIPLDNLNYEAARKPAKLPTVFSPEEAKTTINN------- 127

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS- 205
               ++     I  L+YG GLRI+E L L  +++      L ++ GKG+K RI  LLPS 
Sbjct: 128 ----LEGEYRLIAMLIYGSGLRINEVLRLRVKDVDFGMQQLVVRSGKGNKDRIT-LLPSS 182

Query: 206 --------VRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPG---VF---------- 243
                   +  A+ ++  DL     ++ +   L R        PG   VF          
Sbjct: 183 LIQSLTRQIEAALHQHSSDLAKGYGSVYLPAGLARKYPNASQEPGWQYVFPAAELSVDPR 242

Query: 244 --------------QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
                         Q+  R   R  G+     +HT RHSFAT LL +G D+R+IQ +LGH
Sbjct: 243 SGIRRRHHMIDRTVQKNFRIAIRSAGIRKPANSHTFRHSFATRLLESGYDIRTIQKLLGH 302

Query: 290 FRLSTTQIYTNVNSKNG 306
             + TT+IYT+V  K G
Sbjct: 303 ADVRTTEIYTHVVRKGG 319


>gi|289579058|ref|YP_003477685.1| integrase [Thermoanaerobacter italicus Ab9]
 gi|289528771|gb|ADD03123.1| integrase family protein [Thermoanaerobacter italicus Ab9]
          Length = 291

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 129/276 (46%), Gaps = 25/276 (9%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           + G S  T++SY  D  +FL +      ++   + + Q    E R ++      K+   S
Sbjct: 13  QSGKSTNTVESYISDINEFLRWFGDTYGKEFDGRILEQ-DAREYRNYLLN--IIKLKPSS 69

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           + R ++ +K+F ++L +    TE+NI  +      +   R ++  +   L   V      
Sbjct: 70  INRKMAALKNFNQFLIQTGTGTEANICGISVADIHDREIRTISRNELNRLKRAVYASG-- 127

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQ-GKGDKIRI 199
                + R+ A++ LL G G+R+SE +SLT Q+I         + S + I+ GKG K R 
Sbjct: 128 -----NKRDIALIELLIGTGVRVSELVSLTIQDIHLTERNGSQNYSYIVIRNGKGGKYRE 182

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +PL   V+KA+ EY  + P   +      +F G RG PL      + I++  R  G+   
Sbjct: 183 IPLNSQVKKALEEYLAIRPSSSD-----RIFIGQRG-PLRRESVDKIIKKYCRISGIE-E 235

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            +AH LRH+F T L+  G  +  +  + GH  + TT
Sbjct: 236 ISAHVLRHTFCTRLVQEGTPIPVVSKLAGHSNVQTT 271


>gi|325001053|ref|ZP_08122165.1| integrase family protein [Pseudonocardia sp. P1]
          Length = 297

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 112/271 (41%), Gaps = 18/271 (6%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  T ++Y  D R F  + A +  + + ++ +    Y    A    R  +     ++ R 
Sbjct: 14  SANTRRAYTRDIRDFHTWCAQHGLDLLEVRRVHIDGYIAALATPQPRTGRPAAPATVARK 73

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           LS +     Y         S +  +         PR  ++ Q   L  + L         
Sbjct: 74  LSALAGLYDYAAAEGYLPGSPLTRVER-------PRVGDDSQTTGLDRDELRRLLAAAAA 126

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKA 209
              R+ A++ LL   GLRI+EALS   +++  ++    LR++ KG +   VPL   V  A
Sbjct: 127 DGTRSHALMLLLAHNGLRINEALSRDVEHLDTERGHQVLRLRRKGGRGATVPLSAPVAHA 186

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST--TAHTLRH 267
           I  Y D  P         P+F    G+ L+     R IR+L RY  LP +     HTLRH
Sbjct: 187 IATYLDGRPTG-------PIFITRTGRRLDEPAAWRLIRRLARYAELPQADRINPHTLRH 239

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +F T  L  G  LR +Q   GH    TT+ Y
Sbjct: 240 AFVTAALDAGVSLRDVQDGAGHSDPRTTRRY 270


>gi|218442243|ref|YP_002380571.1| integrase [Cyanothece sp. PCC 7424]
 gi|218175384|gb|ACK74114.1| integrase family protein [Cyanothece sp. PCC 7424]
          Length = 289

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 127/273 (46%), Gaps = 31/273 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G S  T+ SY    R+FL F+     + + + T+  L     RA ++      +   S  
Sbjct: 29  GHSPHTVDSYRRSARRFLDFV----NKPLHLVTLADLQL--WRASLTH-----LAPSSQG 77

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-PRALNEKQALTLVDNVLLHTSHE 148
            +++ IKS L +  +  +   +  + +++ K  ++L  R LNE++ +T++ N        
Sbjct: 78  TAMAAIKSLLSFGHQIGVLPTNVGIALKSPKVKDTLNERILNEEEVMTMIANE------- 130

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSV 206
               D RN  +L LLY  GLR+SE  +L  +++   +    + + GKG K R V LLPS 
Sbjct: 131 ---PDERNRVLLRLLYAGGLRVSELCALKWKDLKSRNQSGQVTVFGKGGKTRTV-LLPSG 186

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
                 + +LC          P+F   + G  L+     R ++      G+  + + H L
Sbjct: 187 -----VWQELCQIRGKSRGADPVFPSRMGGGHLDRTQVYRIVKAAASRAGIEGNVSPHWL 241

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           RH+ A+H L  G  L  +Q+ LGH  ++TT+ Y
Sbjct: 242 RHAHASHSLDRGAPLHLVQATLGHSSVATTERY 274


>gi|170728630|ref|YP_001762656.1| integron integrase [Shewanella woodyi ATCC 51908]
 gi|169813977|gb|ACA88561.1| integron integrase [Shewanella woodyi ATCC 51908]
          Length = 319

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 136/310 (43%), Gaps = 60/310 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRS 87
           RG S  T ++Y    +++++F       K   +T   LS  ++++F++    TQ +   +
Sbjct: 18  RGYSLRTEKAYLYWIKRYILF-----HNKAHPET---LSADDVKSFLTWLATTQNVAVNT 69

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
            K +L+     L +L  + +  E   L      K  +LP  L+ K+   ++ N       
Sbjct: 70  QKVALNS----LVFLYHQYLKIELGDLGFTLATKQRTLPTVLSPKEIAQILSN------- 118

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
               ++     ++ +LYG G+R++E L L  Q+I  +  +L I+ GKG+K R   L  S 
Sbjct: 119 ----MNGTAKFVIEMLYGSGMRVNECLRLRVQDINIENLSLTIRDGKGNKDRQTLLSRSC 174

Query: 207 RKAILEYYDLC----------------PFDLNLN----IQLPLF------RGIRGKPLN- 239
              +  Y D                  P+ L        Q P +        I   P+  
Sbjct: 175 SHLLTAYIDSAIELQSSDNENGFGPSLPYSLGKKYPKAFQQPAWMFVFPSNNISEHPVTK 234

Query: 240 -PGVFQRYIRQLRRYLGLPLSTT-------AHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
            P    R+   +R+ L   +  T        HT RHSFATHLL  G D+R++Q +LGH  
Sbjct: 235 MPCRHHRHDSTIRKALQNAVGMTNIMKKVNCHTFRHSFATHLLQTGTDIRTVQELLGHND 294

Query: 292 LSTTQIYTNV 301
           L+TT+IYT+V
Sbjct: 295 LNTTKIYTHV 304


>gi|108804268|ref|YP_644205.1| phage integrase [Rubrobacter xylanophilus DSM 9941]
 gi|108765511|gb|ABG04393.1| phage integrase [Rubrobacter xylanophilus DSM 9941]
          Length = 309

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 123/273 (45%), Gaps = 16/273 (5%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  T ++Y  + R FL +L     E++  + + +++  +I +   +  T      +  + 
Sbjct: 28  SPQTQKTYNTEIRAFLSYL----RERLG-KNLGEVTAEDI-SLYREHVTGAYAPATAAKK 81

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L+ ++ FL +     IT     +N   LK     PR   +     L +  L       + 
Sbjct: 82  LTALRRFLTFTYMGGITR----VNPEALKFFAKSPRVRQDPSYNILTEEELSRMLSAARA 137

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKA 209
            + R+ A+L ++ GCGLR +E + L   +  +  D   LR++GKGDK+R VP+ P + + 
Sbjct: 138 DNPRDHALLAVMAGCGLREAEVVGLRVGDFREHGDAVLLRVRGKGDKVRNVPVSPELWRL 197

Query: 210 ILEYYDLCPFDLN--LNIQLPLFRGIRGK--PLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           +  Y       L+   + + PLF    GK  PL     Q  +++  R  G+    + H++
Sbjct: 198 VQRYVLSSGRSLSSQTDARKPLFPSRVGKDRPLTTRSIQNIVKKYVRAAGINKPISPHSI 257

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           RH+  T++  N   L  IQ  LGH    TT  Y
Sbjct: 258 RHTVGTNMAMNQAPLLVIQQFLGHSDPKTTMRY 290


>gi|118592747|ref|ZP_01550137.1| Integrase [Stappia aggregata IAM 12614]
 gi|118434798|gb|EAV41449.1| Integrase [Stappia aggregata IAM 12614]
          Length = 287

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/141 (40%), Positives = 72/141 (51%), Gaps = 10/141 (7%)

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLC-PFDL 221
           Y  GLR+SE + L   +I   +  +RI+ GKG K R V L   +   +  Y+ L  P D 
Sbjct: 131 YAAGLRVSEVVGLKVADIDSQRGVIRIRHGKGGKDRYVMLSAQLLHILRTYWRLARPPDW 190

Query: 222 NLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
                  LF    G  P++  V     R  R   G+    T HTLRHSFATHLL NG D+
Sbjct: 191 -------LFPRRNGSGPISITVLHAACRSARAAAGIDKRVTVHTLRHSFATHLLENGTDI 243

Query: 281 RSIQSILGHFRLSTTQIYTNV 301
           R IQ +LGH  LS+T  YT V
Sbjct: 244 RIIQVLLGHNNLSSTARYTKV 264


>gi|219856083|ref|YP_002473205.1| hypothetical protein CKR_2740 [Clostridium kluyveri NBRC 12016]
 gi|219569807|dbj|BAH07791.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 293

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 113/242 (46%), Gaps = 20/242 (8%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           ++ ++ T +  ++  +  + +   S  +S   I+SF  Y  ++++  ++  LN+  +K  
Sbjct: 55  LQDITLTNLEEYLDSQLARGLAQASRSKSYYIIRSFYNYCCRKELVEKNIALNLEPIKVK 114

Query: 123 NSLPRALNEKQALTLV---DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
                 L + + + LV   +N L+ T             I+  +Y  G+RISE  +L  +
Sbjct: 115 RKERTYLTKNEVIVLVQKMENELIKT-------------IVMAIYHTGMRISECTNLKIK 161

Query: 180 NIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           ++      + I  GKG+K R +P+  ++ K + +Y      ++N N     F       +
Sbjct: 162 SVDFKNKVIHIIGGKGNKDRDIPISDTLNKILTKYIKNERLEVNSNY---FFATKASGRI 218

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +P    R I +  + LG     +AH LRHSFA+ L+    +L  IQ +LGH  L  T IY
Sbjct: 219 SPQHINRQINETVKRLGWEKHVSAHILRHSFASKLIQQEVNLVKIQKLLGHSDLRVTSIY 278

Query: 299 TN 300
           T+
Sbjct: 279 TH 280


>gi|153955710|ref|YP_001396475.1| tyrosine recombinase [Clostridium kluyveri DSM 555]
 gi|146348568|gb|EDK35104.1| Predicted tyrosine recombinase [Clostridium kluyveri DSM 555]
          Length = 287

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 113/242 (46%), Gaps = 20/242 (8%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           ++ ++ T +  ++  +  + +   S  +S   I+SF  Y  ++++  ++  LN+  +K  
Sbjct: 49  LQDITLTNLEEYLDSQLARGLAQASRSKSYYIIRSFYNYCCRKELVEKNIALNLEPIKVK 108

Query: 123 NSLPRALNEKQALTLV---DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
                 L + + + LV   +N L+ T             I+  +Y  G+RISE  +L  +
Sbjct: 109 RKERTYLTKNEVIVLVQKMENELIKT-------------IVMAIYHTGMRISECTNLKIK 155

Query: 180 NIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           ++      + I  GKG+K R +P+  ++ K + +Y      ++N N     F       +
Sbjct: 156 SVDFKNKVIHIIGGKGNKDRDIPISDTLNKILTKYIKNERLEVNSNY---FFATKASGRI 212

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +P    R I +  + LG     +AH LRHSFA+ L+    +L  IQ +LGH  L  T IY
Sbjct: 213 SPQHINRQINETVKRLGWEKHVSAHILRHSFASKLIQQEVNLVKIQKLLGHSDLRVTSIY 272

Query: 299 TN 300
           T+
Sbjct: 273 TH 274


>gi|91792496|ref|YP_562147.1| phage integrase [Shewanella denitrificans OS217]
 gi|91714498|gb|ABE54424.1| phage integrase [Shewanella denitrificans OS217]
          Length = 296

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 80/155 (51%), Gaps = 14/155 (9%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEY 213
           R       LY  GLR+ EA+SL   +I      + I+  KG K R++PL     +A+  Y
Sbjct: 125 RYQVCFLTLYSMGLRLGEAVSLQIGDIDSQLMQVHIRDAKGGKDRLIPLPQRTLQALRYY 184

Query: 214 YDLCPFDLNLNIQLP--LFRGIRGKP---LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           +           + P  LF G  GKP   ++ G  Q+ ++++     +  S + H LRHS
Sbjct: 185 WQ--------THRHPRYLFPGKDGKPNSLMDRGGIQKAMKKVISECHIHKSISPHNLRHS 236

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +ATHLL  G DLRS+Q +LGH  L+TT  YT + +
Sbjct: 237 YATHLLEQGLDLRSVQQLLGHNSLNTTARYTRLTT 271


>gi|296132971|ref|YP_003640218.1| integrase family protein [Thermincola sp. JR]
 gi|296031549|gb|ADG82317.1| integrase family protein [Thermincola potens JR]
          Length = 282

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 112/247 (45%), Gaps = 29/247 (11%)

Query: 61  QTIRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           + +  + Y E+R F+    TQ K+    + ++ S I+ F + +    +  + N+  +  +
Sbjct: 38  KPLEHMGYDEVREFLHHAITQRKLSCSYVNQTYSAIRFFYETV----LGWDWNMKQVPRV 93

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K+  +LP  L+  +   +  NV  +  H+         AIL   Y  GLR+ E   L   
Sbjct: 94  KREKTLPAVLSIDEVKAIF-NVTKNIKHK---------AILMTTYAAGLRVGEVTRLKIS 143

Query: 180 NIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           +I      + I+ GKG K R   L P+    + +Y+             P +    GKP 
Sbjct: 144 DIDSKNMQILIKLGKGKKARYSLLSPANLSILRQYW---------RQYRPSYWLFPGKPS 194

Query: 239 NPGVFQRYIRQL----RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           +  +  R ++Q+    +   G+    + HTLRH FATHLL  G D+  IQ +LGH  + T
Sbjct: 195 DKPISVRTVQQIFYDAKVLAGIQKDVSIHTLRHCFATHLLEAGTDILHIQQLLGHTSIHT 254

Query: 295 TQIYTNV 301
           T IY ++
Sbjct: 255 TCIYLHL 261


>gi|319644364|ref|ZP_07998837.1| hypothetical protein HMPREF9011_04440 [Bacteroides sp. 3_1_40A]
 gi|317384161|gb|EFV65135.1| hypothetical protein HMPREF9011_04440 [Bacteroides sp. 3_1_40A]
          Length = 346

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 120/268 (44%), Gaps = 29/268 (10%)

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKI------TTESNILNMRNLKKSNSLPRALNE 131
           +  +K   ++    LS +K+FL++L  +KI         + I  M+  KK   +      
Sbjct: 76  KEVRKCSPQTCNHRLSILKNFLRFLAHKKIQFIKYDCDAAEIKRMQQPKKQVEVITKYTI 135

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LR 189
           K+    ++   L        I  R+ A+  LLY  G RI E LSL    +  D++   + 
Sbjct: 136 KRIFASINTRTL--------IGKRDFALFNLLYSTGTRIDEILSLRLSALHLDETKGYIL 187

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDL------CPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           + GKG+K R + LL S+ + +  Y  L       P D    +  P++     K  +  + 
Sbjct: 188 VLGKGNKQRTIYLLNSMVRILRHYVKLFHPANPLPSDF---VFFPIYGHANKKITSEAIS 244

Query: 244 QR---YIRQLRR-YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           +R   Y+R   +  L +P+    H+ RH+ ATH L +G +L  IQ +LGH  + TT  Y 
Sbjct: 245 KRLKMYVRIASQGLLEIPVDFHCHSFRHARATHWLEDGVNLAQIQKLLGHESIETTMKYV 304

Query: 300 NVNSKNGGDWMMEIYDQTHPSITQKDKK 327
            V+S+     +  + D     + +K KK
Sbjct: 305 GVSSEQMIQALCSMEDNLTLGVEKKYKK 332


>gi|125624456|ref|YP_001032939.1| putative integrase/recombinase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124493264|emb|CAL98231.1| putative integrase/recombinase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300071244|gb|ADJ60644.1| putative integrase/recombinase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 324

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 83/159 (52%), Gaps = 6/159 (3%)

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           T   TK+++ RN  ++ +L   G+RI+EALSL  +NI D Q  ++  GKG K RIV   P
Sbjct: 144 TGFCTKFVNERNYLLILILTDTGMRINEALSLKLENINDSQIIIK-NGKGKKDRIVHCSP 202

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPL---FRGIRGKPLNPGVFQRYIRQLRRYLGL--PLS 259
            V K  L+Y          N  +P+   F    GK  +  + ++ I ++ + + +   + 
Sbjct: 203 LVYKQYLKYNRAKENYFLSNGIVPIENIFVTKFGKKYDYRLAEKEIYKIGKAVNIRDTIR 262

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            + HT RH FA  L+    D+  IQ +LGH  + TT+IY
Sbjct: 263 ISPHTFRHYFAQKLVRENVDIYMIQKLLGHASIKTTEIY 301


>gi|307822466|ref|ZP_07652697.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307736070|gb|EFO06916.1| integrase family protein [Methylobacter tundripaludum SV96]
          Length = 291

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 104/224 (46%), Gaps = 30/224 (13%)

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL---VDNVLLHTSH 147
           SL+   + LK+L +  +     +  M  +   + LP  L+ ++   L   VDN+     H
Sbjct: 71  SLNATLTGLKFLFETTLDRPELLTKMHPVHVPHKLPVVLSREEVARLIAAVDNL----KH 126

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
           +T          L + YG GLR SE +SL   +I   + TLRI QGKG K R   L P +
Sbjct: 127 QTA---------LSVAYGAGLRASEVVSLKVGDIDSQRMTLRIEQGKGSKDRYAMLSPVL 177

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS------- 259
            + +  ++        +     LF G+   P++P       RQL R +            
Sbjct: 178 LERLRAWWKFAHAQGKMLQGGWLFPGL--DPIDP----LSTRQLNRAIHAAAEAARIDKR 231

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            + HTLRHSFATHLL    D+R IQ +LGH +L TT +Y  V +
Sbjct: 232 VSMHTLRHSFATHLLEQKVDIRVIQVLLGHKKLETTALYAQVAT 275


>gi|308172775|ref|YP_003919480.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens DSM 7]
 gi|307605639|emb|CBI42010.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens DSM 7]
          Length = 321

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 108/226 (47%), Gaps = 16/226 (7%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S+   L  I++F  +L+K ++  ++    +  +K+   +    + +Q   L D  +L   
Sbjct: 96  SINTRLRAIRAFFNFLEKNRMIGDNPAKELSLVKQKKEVIETFSREQ---LRD--ILRQP 150

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
            +  +   R+  I+ LL   G+R+ E   ++ ++I  + S + I GKG K R+VP+  +V
Sbjct: 151 DQGTFTGFRDYTIMLLLIETGVRVRELTDISVKDIRWEDSQILINGKGYKERLVPIQSTV 210

Query: 207 RKAILEYYDL---CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTA 262
           +  + +Y  +    P D        LF  I   PL     Q  + +  R   +  +  + 
Sbjct: 211 KTRLRKYVQIRGDVPND-------ALFVTIDNTPLTTRQVQNRLSKYGRMANIKNVRCSP 263

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           HT RH+FA   + NG D+ ++Q++LGH  L   + Y N+ S++  D
Sbjct: 264 HTFRHTFAKMSVQNGADVFALQAVLGHSSLDMVRNYVNLFSRDVMD 309


>gi|294056434|ref|YP_003550092.1| integron integrase [Coraliomargarita akajimensis DSM 45221]
 gi|293615767|gb|ADE55922.1| integron integrase [Coraliomargarita akajimensis DSM 45221]
          Length = 443

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 84/185 (45%), Gaps = 44/185 (23%)

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPL-----------LPSVRKAIL 211
           Y  GLR+SE   L  Q++   ++ + ++ GKG K R+ PL           L  VR    
Sbjct: 253 YAAGLRVSELCRLRIQDLDLKRNQIMVRCGKGGKDRVAPLSEKLVEALEVHLRWVRTGFE 312

Query: 212 EYYDLCPFDLNLNIQLPLF--------------------RGIRGKPLN---------PGV 242
           E  DL   DL+  + LP                      R I   P           P  
Sbjct: 313 E--DLARSDLD-GVYLPDALKRKHSNAGRDWRWQWVWPSREISTDPRGGARRRHHVLPRG 369

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +QR +    +  GL    T+HTLRHSFATHLL +G D+R++Q +LGH ++ TTQ+Y +V 
Sbjct: 370 YQRVVSMAGKRAGLNKRITSHTLRHSFATHLLEDGVDIRTVQDLLGHQQVETTQVYLHVM 429

Query: 303 SKNGG 307
            K G 
Sbjct: 430 QKPGA 434


>gi|254445476|ref|ZP_05058952.1| integron integrase subfamily, putative [Verrucomicrobiae bacterium
           DG1235]
 gi|198259784|gb|EDY84092.1| integron integrase subfamily, putative [Verrucomicrobiae bacterium
           DG1235]
          Length = 459

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 111/275 (40%), Gaps = 67/275 (24%)

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNM-------------------RNLKKSNSLPRA 128
           L+R++SG    +  ++   + T+   LN                    R   +  +LP  
Sbjct: 186 LERAISGFLDHIAVVEGVAVATQRQALNALIFAFRACLGIEPGLLPEYRGATRGRALPVV 245

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L++ +    +D V L               ++ LLYG GLR+SEAL L  +++     ++
Sbjct: 246 LSKGEIGRFLDCVELKVG-----------VLVKLLYGGGLRLSEALRLRVKDLDFAHGSV 294

Query: 189 RIQ-GKGDKIR--------IVPLLPSVRK----------------------------AIL 211
            ++ GKG K R        + PL   +RK                            A  
Sbjct: 295 VVRDGKGGKDRRTTLPAGLVGPLREQLRKVRVLFDKDRAEGRDGVYLPNKLERKYPNASR 354

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           E+     F  +  ++ P     R       V QR ++      G+    T H +RHSFAT
Sbjct: 355 EWIWQYVFPTDKLVKDPRSEAFRRHHWGERVIQRAVKDAAMAAGIHKRVTPHVMRHSFAT 414

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           HLL +G D+R++Q +LGH  + TT IY +V ++ G
Sbjct: 415 HLLEDGYDIRTVQELLGHASVETTMIYLHVMNRPG 449


>gi|170289596|ref|YP_001739834.1| integrase family protein [Thermotoga sp. RQ2]
 gi|281413176|ref|YP_003347255.1| integrase family protein [Thermotoga naphthophila RKU-10]
 gi|170177099|gb|ACB10151.1| integrase family protein [Thermotoga sp. RQ2]
 gi|281374279|gb|ADA67841.1| integrase family protein [Thermotoga naphthophila RKU-10]
          Length = 253

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 133/289 (46%), Gaps = 52/289 (17%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L++ +  S+ TL  Y    R+F  F      E +T +T ++   T     ISK   
Sbjct: 4   YLEYLKVVKKRSERTLYQYRSILREFTRF------EPVTPETWKEYLNT-----ISKNTP 52

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNILNMRNLKKSNSLPRA--LNE-KQALT 136
                 + +  L  +K++L +   R +   E    N     +   LP+A  L+E ++ + 
Sbjct: 53  A-----TQRNKLVVVKNYLNWKADRGLLNIEERFWNEAEPPRHTVLPKAIELDEVRRIIE 107

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGD 195
             DN L               AI  +L   G+R+SE ++L+  +I +++ + +RI+GKG+
Sbjct: 108 ACDNSLYR-------------AIFKVLANTGMRVSEIVNLSVHDISVNETARIRIKGKGN 154

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RI+ +    ++ + E  +   F+     + P  R I          QR +++  R  G
Sbjct: 155 KERIINI---SKELVEELMNSGFFE-----KKPSVRSI----------QRAVKRYARKAG 196

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +    T H  RHSFA  L+  G  L  IQ++LGH  +STT IY  + S+
Sbjct: 197 IKKKVTPHIFRHSFAVALIERGVPLNKIQALLGHANISTTSIYLKIASE 245


>gi|148270896|ref|YP_001245356.1| phage integrase family protein [Thermotoga petrophila RKU-1]
 gi|147736440|gb|ABQ47780.1| phage integrase family protein [Thermotoga petrophila RKU-1]
          Length = 256

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 77/148 (52%), Gaps = 19/148 (12%)

Query: 158 AILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           AI  +L   G+R+SE + L+ Q+I ++D + +RI+GKG+K RI+ +    R  + E    
Sbjct: 119 AIFKVLANTGMRVSELVGLSIQDISLNDTARIRIKGKGNKERIINV---SRDLVEELVRS 175

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
             F+     + P  R I          QR +++  R  G+    T H  RHSFA  L+  
Sbjct: 176 GFFE-----KKPSVRSI----------QRAVKRYARKAGIRKKVTPHIFRHSFAVALIER 220

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           G  L  IQ++LGH  +STT IY  + S+
Sbjct: 221 GIPLNKIQALLGHANISTTSIYLKIASE 248


>gi|251778556|ref|ZP_04821476.1| putative site-specific recombinase/integrase [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|243082871|gb|EES48761.1| putative site-specific recombinase/integrase [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 291

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 124/273 (45%), Gaps = 11/273 (4%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEE-KITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           +E G S  T++SY  D + F+ FL     E   T+Q    +SY   + F+ +   +    
Sbjct: 13  VEDGKSSKTIESYVGDIKAFIEFLGDKGAEFNGTLQRFYVVSY---KNFLVESNYEV--- 66

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            ++ + ++ I +  +YL       E  + N ++  K         E  +   V+ +L + 
Sbjct: 67  ATINKKINSIHALNRYLVATGAMKEIVVENSKDRIKIAYGSEKQVEVYSDKEVERILFYI 126

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
            +E K +  RN  I+ LL   G+R+SE  S+  ++I     +++I GKG K R VPL   
Sbjct: 127 QNEEK-VSKRNKVIVMLLLYTGVRVSELCSIKIKDIDFLNYSIKIYGKGGKFREVPLKFD 185

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           +   I EY  +   D N+     L  G RG  L        + +L + +G+      HT 
Sbjct: 186 LADVIKEY--IKDRDYNVKDSEYLVIGQRG-ALKRDAINTMLERLTKDIGMVNKLKPHTF 242

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           RH+F T L++ G  + ++  + GH  + TT  +
Sbjct: 243 RHTFCTRLINRGVPISTVSKLAGHSSVDTTATF 275


>gi|146284555|ref|YP_001165508.1| phage integrase family protein [Enterobacter sp. 638]
 gi|145320688|gb|ABP62834.1| phage integrase family protein [Enterobacter sp. 638]
          Length = 329

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 106/217 (48%), Gaps = 20/217 (9%)

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR--ALNEKQALTLVDNVLLHTSHE 148
           +L G+      LK   + +  +I  +RNL+ S  LPR  AL  ++    +  +      +
Sbjct: 106 ALKGVAKEAWMLKLMDVESFQHIRAVRNLRGSR-LPRGRALPAEE----IGKLFAVCEAD 160

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
             ++  R++A+L ++ GCGLR SE + L+  +++  +  LR+ GKG+K R+  +     +
Sbjct: 161 ATYLGVRDAALLGVILGCGLRRSETVGLSLSDVVTHERALRVLGKGNKERLAYMPAGTWQ 220

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIR-------GKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            +  + D     +      PLF  IR        +  +  V+  +I Q+R+         
Sbjct: 221 RLQTWID----QVRGEAAGPLFTRIRRFDTLTNDRLTDQAVY--HILQMRQRQAQIERCA 274

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            H LR +FAT +L NG DL +++  +GH  ++TTQ Y
Sbjct: 275 PHDLRRTFATAMLDNGEDLITVKDAMGHASVTTTQQY 311


>gi|34451618|gb|AAQ72365.1| putative integrase [Thermus sp. R]
          Length = 391

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 122/272 (44%), Gaps = 37/272 (13%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           LE+E G S  T + Y  D     +F  ++ E         ++    IRAF++ R   ++ 
Sbjct: 92  LEMEEGRSPRTAKEYLMDAG---LFARWFRERHGRPPRWEEVGSQHIRAFLASR---EVS 145

Query: 85  DRSLKRSLSGIKSFLKYLKKR------KITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                R L+ ++   +YL +       K  TE     ++  K    LP  L   +   L+
Sbjct: 146 PYRAGRVLASLRKLFRYLAEVEGLPLLKDPTE----GVKRPKLPRRLPVYLTPPEVARLL 201

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGD 195
                + S     +  R+ A+L  LYG GLR+SEAL+LT  ++         +R+QGKG 
Sbjct: 202 QAAYQNRSPR---VALRDWALLAFLYGTGLRLSEALALTYADLTYQDGIPHAIRVQGKGG 258

Query: 196 KIRIVPLLPSVRKAI--------LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           K R+V L P+ ++A+        LE +   P+  + +   P     RGKP +    +  +
Sbjct: 259 KERVVVLSPTAQRALHQWLKHRNLEGHPTSPYIWS-HTSGP----NRGKPFSARAVEAMV 313

Query: 248 RQLRRYLGLP--LSTTAHTLRHSFATHLLSNG 277
           +++ +  GL      T H LRHS+A+ L+  G
Sbjct: 314 KRVAKRAGLKDWRRITPHKLRHSYASALVEAG 345


>gi|89147424|gb|ABD62572.1| integrase [uncultured bacterium]
          Length = 163

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 45/64 (70%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+P   QR +R   R+ G+    T HTLRHSFATHLL NG D+R++Q +LGH  +STT I
Sbjct: 99  LDPRSIQRALRDALRFAGIAKHATPHTLRHSFATHLLDNGYDIRTVQELLGHKDVSTTMI 158

Query: 298 YTNV 301
           YT+V
Sbjct: 159 YTHV 162


>gi|241992588|gb|ACS73646.1| IntI [uncultured bacterium]
 gi|241992595|gb|ACS73651.1| IntI [uncultured bacterium]
 gi|241992630|gb|ACS73675.1| IntI [uncultured bacterium]
          Length = 316

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/74 (51%), Positives = 49/74 (66%)

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           P+ R IR   L P   QR IRQ  +  G+    T HTLRHSFATHLL +G D+R++Q +L
Sbjct: 243 PVSRIIRRHHLYPQSLQRAIRQAVQAAGIVKPATTHTLRHSFATHLLMSGYDIRTVQELL 302

Query: 288 GHFRLSTTQIYTNV 301
           GH  ++TT IYT+V
Sbjct: 303 GHADVATTMIYTHV 316


>gi|254427016|ref|ZP_05040723.1| integron integrase subfamily [Alcanivorax sp. DG881]
 gi|196193185|gb|EDX88144.1| integron integrase subfamily [Alcanivorax sp. DG881]
          Length = 328

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 133/306 (43%), Gaps = 66/306 (21%)

Query: 51  AFYTEEKITIQTIRQLSYT-----------EIRAFISKRRTQKIGDRSLKR-SLSGIKSF 98
           ++ TE+   +  +R + Y            EI+AF+S    Q+    S ++  L+ +  F
Sbjct: 29  SYRTEQTYVLWVVRYIRYNQLRHPSTMGAKEIQAFLSYMSVQRHCSPSTQKIVLNALNCF 88

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
            +    R +  +   LN R  K+   +P   +E++A  ++             +   +  
Sbjct: 89  YR----RFLQQDYGELNFRQSKRKPRIPAVFSEQEAQAVI-----------ALLSEPSQL 133

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS-----VRKAILE 212
           I  LLYG GLR+SEAL +  +++  D+  + + QGKGDK R   LLP      +R+ I  
Sbjct: 134 ICELLYGAGLRVSEALRIRIKDLDFDRMIITVHQGKGDKDRRT-LLPKSCEERLRQQIAI 192

Query: 213 YYDLCPFDLNLNIQ---LP--LFRGIRG-----------------KPLNPGVFQRY---- 246
             +L   D    +    +P  L R   G                 +    G+ +R+    
Sbjct: 193 ASNLYEMDRKNGVGPAWMPHALSRKYSGAGSQRIWQFIFPSKEPARDPETGIIRRHHYHQ 252

Query: 247 ------IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                 ++Q      +      HT RHSFATHLL  G D+R++Q +LGH  +STT+ Y +
Sbjct: 253 DNVRKHVKQAAAEAEITKLCGPHTFRHSFATHLLEKGYDIRTVQELLGHSDVSTTERYLH 312

Query: 301 VNSKNG 306
           V ++ G
Sbjct: 313 VMNRGG 318


>gi|94984539|ref|YP_603903.1| phage integrase [Deinococcus geothermalis DSM 11300]
 gi|94554820|gb|ABF44734.1| phage integrase [Deinococcus geothermalis DSM 11300]
          Length = 291

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 6/144 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           RN AIL LL GCGLR  E  SL   ++    S +++ GK  + RIVP+  + ++ +  Y 
Sbjct: 130 RNCAILALLAGCGLRAGEVASLKLTDVDWHGSAVKVSGKTGE-RIVPMDRTTQRLLRRYV 188

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                  + N+ L       G+P+        + ++    G     T H LRH+ AT  L
Sbjct: 189 THGRRGNHPNVFL-----FSGRPIKAMTLTHLLSRMSDRAGFTRRVTPHLLRHTAATTYL 243

Query: 275 SNGGDLRSIQSILGHFRLSTTQIY 298
            NGGD+ S++ ILGH  ++TT +Y
Sbjct: 244 RNGGDVASLRRILGHATINTTALY 267


>gi|268316885|ref|YP_003290604.1| integrase family protein [Rhodothermus marinus DSM 4252]
 gi|262334419|gb|ACY48216.1| integrase family protein [Rhodothermus marinus DSM 4252]
          Length = 309

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 143/321 (44%), Gaps = 31/321 (9%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LPE +         + L  L + R  S+ T ++Y  D  +F  F  F+ + +++++ + +
Sbjct: 2   LPEKLPLPAASAFADDLLPLFLSRCRSENTRRAYRNDLEEF--FGLFFEDGRLSLENVSK 59

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +++  +  +I   +     + +L+R +S + SF K+ +  ++   S ++ +        L
Sbjct: 60  VTFAHVNLYIEHLKRSGCAENTLRRKISSVSSFFKWAEAVELVDRSPVVRL-----LVQL 114

Query: 126 PRALNEKQALTLVDNV---LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI- 181
           PRA  E+  +TL       +L  +        R+ A++ +L  C LR SEA ++  ++I 
Sbjct: 115 PRASKERHIVTLSREEARQMLEAARAHPRTGIRDEALVRVLLYCWLRRSEAAAMNFEHIR 174

Query: 182 -MDDQSTLRI----QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--- 233
            +     LR+    +G  + ++I P   +  + +  +Y           + P++R     
Sbjct: 175 KIGAHYVLRLPRTKKGTEEIVKIPPHCMTSLERLAAFYG--------EARGPVWRSFSNN 226

Query: 234 -RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
            RG+ L+       + +L R +GL     AHTLRH+  T  +  G  L  +++   H  +
Sbjct: 227 SRGRRLSAQSIYNIVARLAREIGLDRRIGAHTLRHTGITLAVQGGAPLHKVRTQARHADI 286

Query: 293 STTQIYTNVN---SKNGGDWM 310
            TT +Y +       N  D++
Sbjct: 287 QTTMVYVHQQDFLDDNAADYV 307


>gi|222530398|ref|YP_002574280.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222457245|gb|ACM61507.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 283

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 138/297 (46%), Gaps = 38/297 (12%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE--EKITIQTIRQLSYTEIR 72
           ++E  NWL    + +G  + T ++Y    R    FL +Y E  ++     +  L     R
Sbjct: 1   MQEFHNWL----LGKGKMESTAKTY---IRAVENFLKWYQESYDREFDGKVLPLHIRNYR 53

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN--MRNLKKSNSLPRALN 130
           +++     +K+  +++  +LS IKS+  +L ++ +   + +L+    ++++    P  L 
Sbjct: 54  SYLMT--VKKLNAKTINNNLSAIKSYCDFLVEKGLIETNPVLDDYFIDVQEPGVSPAKLE 111

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            K    L + V+ + S       AR+ AI Y L   G+R+SE  ++   +I+ D+  +  
Sbjct: 112 NKDFNKLEEAVVHYGS-------ARDIAIFYTLAYTGVRVSELCNIRLNDIVKDELII-Y 163

Query: 191 QGKGDKIRIVPLLPSVRKAILEY------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
            GKG K R +PL  +VR+AI  +      Y     D        LF   RGK L+     
Sbjct: 164 YGKGGKQRKIPLNRTVREAIDNWLKERGKYKYSHLDY-------LFISERGK-LDRSTVY 215

Query: 245 RYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           R I++  R   + P+    H LRH F    L  G  +  + ++ GH R++TTQIY N
Sbjct: 216 RIIKEYCRIAKIEPIG--PHQLRHYFCKRALEKGFTITEVAALAGHSRITTTQIYIN 270


>gi|237668049|ref|ZP_04528033.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|237656397|gb|EEP53953.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 332

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 122/278 (43%), Gaps = 31/278 (11%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           SK TL +Y    R F  F+         ++ +  +S  +IR F++    + +   ++   
Sbjct: 71  SKATLNNYMYTLRNFSNFI---------VKPVSNISKNDIRYFMAIN-YENLKPSTVNNK 120

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L+ IK+F ++L++ +I  +    N     +   LP+ L     +  ++ + L        
Sbjct: 121 LACIKAFFEWLEQEEIIPK----NPARYLQGTRLPKHLRHSLTIEELEKIRLSCK----- 171

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
            D R  A++  L+  G RISE +     ++    + LR+ GKGDK R V      +  I 
Sbjct: 172 -DVRERALIEFLFATGCRISEVVKANISDLDLSNNLLRVIGKGDKERTVFFNDKTKLHIK 230

Query: 212 EYYDLCPFD---LNLNIQLPLFR-GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
            Y D    +   L +  + P  R G RG  L        I ++     +  S   H LRH
Sbjct: 231 NYIDTRKDENEALFIASKFPYKRIGKRGLEL-------IISRIGERADIGKSVYPHLLRH 283

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           + AT  L +G D+ +IQ +LGH   STTQIY   +  N
Sbjct: 284 TMATLGLQSGADITTIQHLLGHTTPSTTQIYAETSLDN 321


>gi|158320856|ref|YP_001513363.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
 gi|158141055|gb|ABW19367.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
          Length = 312

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 134/289 (46%), Gaps = 31/289 (10%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ----LSYTEIRAFISKRRTQKIG 84
           +G ++ T+Q+YE     F  F+     E+IT+  ++Q    LS  +     + +  + + 
Sbjct: 18  KGNTEKTIQNYERMITYFQNFIGNKAMEEITLFDVKQYQLYLSSKKAEFKFTDKIDRTLS 77

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN---- 140
            ++++     I+ FL +     +  E       ++     LP+A   K+ + ++ +    
Sbjct: 78  KKTIQTYTRQIRVFLNWAYAESLLKE-------DIGSKIKLPKA--PKKVIEILSDEEIE 128

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +L    ++      RN  ++ L+   GLR  E ++L    I   Q+ +++ GKG+K RI+
Sbjct: 129 LLYKCINDNTEFGLRNKCMISLMLDSGLRREEVITLDLDCIHFTQNIIKVHGKGEKERII 188

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP------LFRGIRGKPLNPGVFQRYIRQLRRYL 254
           PL    +K + +Y       LN    +P      +F      P+   V +  + +L++  
Sbjct: 189 PLGVYTKKLLFKY-------LNGYRPMPSYPTNRVFISQEKVPVTMDVMKMLMLRLKKRT 241

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           G+      H LRH+FAT  L  GGD  S+Q ILGH  L  T++Y+++ S
Sbjct: 242 GIQ-RLKPHLLRHTFATKYLIAGGDAFSLQMILGHTSLEMTRMYSHLAS 289


>gi|254498879|ref|ZP_05111584.1| putative integrase/recombinase [Legionella drancourtii LLAP12]
 gi|254351864|gb|EET10694.1| putative integrase/recombinase [Legionella drancourtii LLAP12]
          Length = 335

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 135/291 (46%), Gaps = 27/291 (9%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEK-ITIQTIR--QLSYTEIRAFISK-RRTQKI 83
           +R LS  T+++Y      F++ L F  + K I I+ ++  Q+    I AF+    + +  
Sbjct: 21  QRNLSPNTIKAYR---DVFILLLRFCRDVKNIPIEKLQLEQVDVVLIEAFLDHIEKDRHC 77

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP--RALNEKQALTLVDNV 141
             R+L   L+ + +F +Y++        + L +   ++  ++P  R +  + +    D++
Sbjct: 78  TPRTLNHRLTTLHAFFRYIQV------EDPLYLLQCQRILAIPLRRFVRPEVSYLSKDHL 131

Query: 142 --LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIR 198
             LL   +  K    R+  +L  LY  G R+ E + LT  ++ +   + +RI GKG KIR
Sbjct: 132 AALLAQPNLGKPEGRRDVVLLSTLYDTGARVQELIDLTVGDVRLKTPAQVRILGKGRKIR 191

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PGV---FQRYIRQLRRYL 254
           +VPL+ +    +  Y       L      PLFR  +G  L   GV    Q+Y R +R   
Sbjct: 192 VVPLMDNTANLLQSYLHENNLLLPETFDYPLFRNNQGNKLTRVGVNYILQKYERLVRE-- 249

Query: 255 GLPL---STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             P      + HTLRH+   HLL  G  L  I+  LGH  + TT+IY   N
Sbjct: 250 ASPQYKQRISPHTLRHTKGMHLLQGGVSLDIIRDFLGHVDIKTTEIYARAN 300


>gi|91780847|ref|YP_556054.1| putative phage integrase [Burkholderia xenovorans LB400]
 gi|91693507|gb|ABE36704.1| Putative phage integrase [Burkholderia xenovorans LB400]
          Length = 291

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 123/277 (44%), Gaps = 25/277 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R LS  T  +Y    R+F  FL   + +  T++ +R+     +    S          SL
Sbjct: 22  RQLSPKTQDTYLRIVREFARFLG-RSPDTATVEDLRRYQLHLVDHGTSPV--------SL 72

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
             +++G+K F +    R       ++ M  ++   +LP  L+  +   L++    +  H+
Sbjct: 73  NHAITGLKFFFEVTLDRP----DLMVRMHPVRVPRTLPVVLSPDEVRRLIEAAG-NLKHQ 127

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR 207
           T          L + YG GLR SE ++L   +I   + TLRI QGKG + R   L P + 
Sbjct: 128 TA---------LSVAYGAGLRASEVVALKVTDIDSQRMTLRIEQGKGRRDRYAMLSPVLL 178

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           + +  ++ +      +     LF G+    PL+     R I        +    + HTLR
Sbjct: 179 ERLRVWWHVARAQGRMPDGGWLFPGLDPVDPLSTRQLNRAIHAAAEAAQIDKRVSMHTLR 238

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           HSFATHLL    D+R IQ +LGH +L  T +Y  V +
Sbjct: 239 HSFATHLLEQKVDIRVIQVLLGHAKLENTALYVQVAT 275


>gi|227461200|gb|ACP39545.1| putative integron integrase [uncultured microorganism]
          Length = 308

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 86/180 (47%), Gaps = 37/180 (20%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAIL------ 211
           +  LLYG GLR+ E L++  +++   +  L ++ GKG K R+  L  S+R  ++      
Sbjct: 129 VASLLYGSGLRLHEGLTVRVKDLDFARRELVVRNGKGQKDRVTLLPESLRDPLVGHLTRL 188

Query: 212 -EYYD----------LCPFDLNLNIQLP--------LF--RGIRGKP---------LNPG 241
            E+++            PF L               LF    I   P         L+PG
Sbjct: 189 REWFENERRQKRPGVSLPFALAKKYPAASVSWGRQYLFPSASICADPYSRLPVRHHLHPG 248

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             QR + +  R  GL    + HT RHSFATHLL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 249 TVQRGVARAVRAAGLAKPASCHTFRHSFATHLLDSGYDIRTVQELLGHSNVKTTMIYTHV 308


>gi|218289451|ref|ZP_03493679.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218240319|gb|EED07501.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 145

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/140 (38%), Positives = 82/140 (58%), Gaps = 18/140 (12%)

Query: 174 LSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
           ++L  Q +  + + LR+ +GKG K R VPL    ++A++ Y  + P D++ +    LF G
Sbjct: 2   INLNIQEVDLEGNVLRVCRGKGRKDRFVPLNEMAKEALIRYLMVRP-DVDDD---ALFIG 57

Query: 233 IR------GKPLNPGVFQRYIRQ--LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
           +R      GK     +F R +R+  +RR  GL L    H LRH+FAT LL  G DLR++Q
Sbjct: 58  MRTSRKRIGKNYLNALFHRCLREAGIRRK-GLTL----HKLRHTFATRLLERGADLRTLQ 112

Query: 285 SILGHFRLSTTQIYTNVNSK 304
            +LGH  LSTTQ+Y + +S+
Sbjct: 113 ELLGHENLSTTQVYVHASSE 132


>gi|60115682|ref|YP_209473.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|168239749|ref|ZP_02664807.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194733830|ref|YP_002112908.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|45758240|gb|AAS76452.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|194709332|gb|ACF88555.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197287589|gb|EDY26981.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 325

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 109/219 (49%), Gaps = 24/219 (10%)

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP--RAL--NEKQALTLVDNVLLHTS 146
           +L G+      L+   + +  +I  +RNL+ S  LP  RAL   E +AL  V        
Sbjct: 102 ALKGVAKEAWMLRLMDVESFQHIRAVRNLRGSR-LPSGRALPQGEIRALFAV------CE 154

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
            +   + AR++A+L ++ GCGLR SE +SL  ++++     LR+ GKG+K R+  +    
Sbjct: 155 ADRSCLGARDAAMLAVILGCGLRRSEVVSLDLRDVVTQDRALRVLGKGNKERLAYVPAGA 214

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIR-------GKPLNPGVFQRYIRQLRRYLGLPLS 259
            + +  + D    ++      PLF  IR        +  +  V+  +I Q+R+       
Sbjct: 215 WQRLQIWID----EIRGETPGPLFTRIRRFGDVTLNRLTDQAVY--HILQVRQGQAGITK 268

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            + H LR +FAT +L NG DL +++  +GH  ++TTQ Y
Sbjct: 269 CSPHDLRRTFATAMLDNGEDLITVKDAMGHASVTTTQQY 307


>gi|86142418|ref|ZP_01060928.1| probable integrase [Leeuwenhoekiella blandensis MED217]
 gi|85831170|gb|EAQ49627.1| probable integrase [Leeuwenhoekiella blandensis MED217]
          Length = 195

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 81/155 (52%), Gaps = 17/155 (10%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213
           ++  +L LLYGCGLR  E  +L  +++  D+  L I QGKG K R VPL     + +  Y
Sbjct: 31  KHRLVLALLYGCGLRCFELCNLQLKDLDFDRMMLHIRQGKGRKDRYVPLSKMQIRGLQTY 90

Query: 214 YDLCPFDLNLNIQLP---LFRG--IRGK--PLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
                    L  + P    F G    GK  PL+    +  + + R++ G+    T H+LR
Sbjct: 91  ---------LRAEQPSIWCFTGNNSEGKAVPLSTQGVRWIVSEARKHSGIRKQVTTHSLR 141

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           HS+ATHLL  G D+ S++ +LGH  + TT  Y +V
Sbjct: 142 HSYATHLLEMGLDIMSVKDLLGHADIQTTLTYLHV 176


>gi|225174941|ref|ZP_03728938.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169581|gb|EEG78378.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
          Length = 286

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 124/278 (44%), Gaps = 19/278 (6%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           +IER  S +T+  Y  D R F  ++       + ++ I+     +I  F+   + + I  
Sbjct: 16  DIER--SPVTIALYLRDLRYFGSYMEKKHNGPVYLEDIKS---ADIEGFLRSLKERNIAP 70

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            S  R L  ++SF K+  K+++      L +  +K        L++++   L D +   T
Sbjct: 71  NSRSRYLYTLRSFYKFAYKKELVERDISLAVDLVKLPTKERHYLSQQEVAELADTI---T 127

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLP 204
           +   + I       +  L   GLRISE + LT  ++  D+  +  I GKG+K R VP+  
Sbjct: 128 NDLVRLI-------VIFLANTGLRISECIKLTMDDVDLDKGIIHVISGKGNKDRNVPINN 180

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            +   +++Y D      N N     F   +   ++       +RQ  + LG   + + H 
Sbjct: 181 KLLPLLIDYKDNWRDAYNSNF---FFATKKTGTISNTYVNNTLRQAVQSLGWKKNVSCHI 237

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           LRHSFAT L+     L  IQ +LGH  L  T +Y + +
Sbjct: 238 LRHSFATSLVKQKVGLVEIQKLLGHSDLKITSVYMHAD 275


>gi|312126649|ref|YP_003991523.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
 gi|311776668|gb|ADQ06154.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 283

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 139/297 (46%), Gaps = 38/297 (12%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE--EKITIQTIRQLSYTEIR 72
           ++E  NWL    + +G  + T ++Y    R    FL +Y+E  ++     +  L     R
Sbjct: 1   MQEFFNWL----LGKGKMESTAKTY---IRAVENFLKWYSESYDREFDGKVLPLHIRNYR 53

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN--MRNLKKSNSLPRALN 130
           +++     +K+  +++  +LS IKS+  +L ++ +   + +L+    ++++    P  L 
Sbjct: 54  SYLMT--VKKLNAKTINNNLSAIKSYCDFLVEKGVIETNPVLDDYFIDVQEPGVSPAKLE 111

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            K    L + V+ + S       AR+ AI Y L   G+R+SE  ++   +I+ D+  +  
Sbjct: 112 NKDFNKLEEAVVHYGS-------ARDIAIFYTLAYTGVRVSELCNIRLNDIVKDELII-Y 163

Query: 191 QGKGDKIRIVPLLPSVRKAILEY------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
            GKG K R +PL  +VR+AI  +      Y     D        LF   RGK L+     
Sbjct: 164 YGKGGKQRKIPLNRTVREAIDNWLKERGKYKYSHLDY-------LFISERGK-LDRSTVY 215

Query: 245 RYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           R I++  R   + P+    H LRH F    L  G  +  + ++ GH R++TTQ+Y N
Sbjct: 216 RIIKEYCRIAKIEPIG--PHQLRHYFCKRALEKGFTITEVAALAGHSRITTTQVYIN 270


>gi|75758220|ref|ZP_00738345.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74494274|gb|EAO57365.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 368

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 85/166 (51%), Gaps = 6/166 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R++AI+ LL   G+R+ E  SL  ++++ D   L ++ K  K  +V       + I++Y 
Sbjct: 204 RDAAIISLLLTSGIRVGELSSLRLKDVIFDSRKLVVERKRSKEDVVFFSKQTLEYIVQYL 263

Query: 215 DL--CPFDLNLNIQLPLFRGIRGKPLNP---GVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           ++    +  +     PLF       +NP      Q+ I +  +  G P   TAH LRHSF
Sbjct: 264 EVRESHYKADDKPTSPLFVTKYAGKINPISKNTVQKMIMKYAKIYGKP-ELTAHILRHSF 322

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            T++     ++R +Q  LGH  ++TTQIYT++   +  + + E+++
Sbjct: 323 GTNVFKKTKNIRGVQEALGHSSINTTQIYTHMFEDDERELIDEVFE 368


>gi|228904845|ref|ZP_04068899.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis IBL 4222]
 gi|228854859|gb|EEM99463.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis IBL 4222]
          Length = 365

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 85/166 (51%), Gaps = 6/166 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R++AI+ LL   G+R+ E  SL  ++++ D   L ++ K  K  +V       + I++Y 
Sbjct: 201 RDAAIISLLLTSGIRVGELSSLRLKDVIFDSRKLVVERKRSKEDVVFFSKQTLEYIVQYL 260

Query: 215 DL--CPFDLNLNIQLPLFRGIRGKPLNP---GVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           ++    +  +     PLF       +NP      Q+ I +  +  G P   TAH LRHSF
Sbjct: 261 EVRESHYKADDKPTSPLFVTKYAGKINPISKNTVQKMIMKYAKIYGKP-ELTAHILRHSF 319

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            T++     ++R +Q  LGH  ++TTQIYT++   +  + + E+++
Sbjct: 320 GTNVFKKTKNIRGVQEALGHSSINTTQIYTHMFEDDERELIDEVFE 365


>gi|320161829|ref|YP_004175054.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
 gi|319995683|dbj|BAJ64454.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
          Length = 292

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/304 (21%), Positives = 135/304 (44%), Gaps = 38/304 (12%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L++ + WLQ    E+  S +T++ Y  D R F  +      + + ++ +      E R +
Sbjct: 4   LEQFEVWLQ----EQDRSPVTVRGYMADLRAFAAWFEQTNGKALGVEEVTPADVREYRGW 59

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +     ++ G  +++R L  ++++ ++  + +         ++  ++    P  L +++ 
Sbjct: 60  LQA--VKRAGAATVRRHLMALRAYCRWGVETERIDRDPTARVKLPREETLSPGWLAKQEQ 117

Query: 135 LTLVDNVLLHTSHET----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             L+       S       + +  R+ A++  L   GLRI+EA +LT +++   + +  +
Sbjct: 118 YRLLREAERAVSAADTPTRRRLAVRDRALVVFLLNTGLRIAEACALTVEDVQIGERSGWV 177

Query: 191 ---QGKGDKIRIVPLLPSVRKAILEYYDL------CPFDLNLNIQLPLFRGIRGKPLNPG 241
               GKG+K R VPL   VR+A+  + +         FDL  +                G
Sbjct: 178 VVRGGKGNKSRKVPLNVEVRRALNAWREERGDGEGSVFDLTPS----------------G 221

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            ++R +   RR     +    HTLRH+ A +L+  G  L  + ++LGH  L+TT++Y   
Sbjct: 222 AYRRLVEMGRR---AGVEVHPHTLRHTLAKNLVDAGVGLHEVAALLGHSSLNTTRVYVTP 278

Query: 302 NSKN 305
             ++
Sbjct: 279 GERD 282


>gi|241992564|gb|ACS73629.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 140/333 (42%), Gaps = 62/333 (18%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S LT Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYLHY----SLLTEQAYVHWVRAFIRFHG--------VRHPAT 55

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           L  +E+ AF+S    ++    S  R    + + L +  K   T    +  +   + S  L
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQ--ALAALLFFYGKVLCTDLPWLQEIGRPRPSRRL 113

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P  L   + + ++            +++  +     LLYG G+RISE L L  +++  D 
Sbjct: 114 PVVLTPDEVVRILG-----------FLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFDH 162

Query: 186 STLRI-QGKGDKIR--IVP--LLPSVR--------------------------------K 208
            T+ + +GKG K R  ++P  L PS+R                                +
Sbjct: 163 GTIIVREGKGSKDRALMLPESLAPSLRERLSRARAWWLKDQAEGRSGVALPDALERKYPR 222

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           A   +     F  + +   P    +R   +    FQR  ++     G+    T HTLRHS
Sbjct: 223 AGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHS 282

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           FAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 283 FATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|312174392|emb|CBX82639.1| Tyrosine recombinase xerD [Erwinia amylovora ATCC BAA-2158]
          Length = 346

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 138/318 (43%), Gaps = 47/318 (14%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLA---FYTEEKITIQTIRQLSYTEIRAFISKRRT--QK 82
           ER  S+ TL++      +F+ + A    Y    IT   + +      R     R+T  + 
Sbjct: 44  ERNWSETTLKTQTHHGYRFICWAAERGLYHAADITRPVLERYQ----RWLYQYRKTNGEA 99

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL----NEKQALTLV 138
           +  R+ + +L  ++ +  ++ K+ +   +   ++   +    LPR +      ++ L L 
Sbjct: 100 LTSRTQRTTLQPLQVWFSWMAKQGLILANPAADLELPRLEKHLPRTILSVEQVEEVLNLC 159

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197
           D   L           R+ A+L LL+  G+R  E   L   +    +  L I QGKG + 
Sbjct: 160 DLSTLQ--------GMRDRALLELLWSTGIRRGEVARLETYSADFSRKILTIVQGKGKQD 211

Query: 198 RIVPL-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           R++P+           L  VR  +L   D     L ++       G+ G   N G+    
Sbjct: 212 RVIPVGERALCWLRHYLHQVRPEVLVSPDCKALFLAMD-------GVAGLTAN-GITHAV 263

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +  LR   G+    + H  RH+ AT +L NG DLR IQ++LGH  + +TQIYT V+ +  
Sbjct: 264 VPYLR-AAGIE-KGSCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRA- 320

Query: 307 GDWMMEIYDQTHPSITQK 324
              +  ++  THP+  Q+
Sbjct: 321 ---LQAVHASTHPAEQQE 335


>gi|167628727|ref|YP_001679226.1| phage integrase [Heliobacterium modesticaldum Ice1]
 gi|167630972|ref|YP_001681471.1| phage integrase [Heliobacterium modesticaldum Ice1]
 gi|167591467|gb|ABZ83215.1| phage integrase [Heliobacterium modesticaldum Ice1]
 gi|167593712|gb|ABZ85460.1| phage integrase [Heliobacterium modesticaldum Ice1]
          Length = 341

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 99/224 (44%), Gaps = 17/224 (7%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP--RALNEKQALTLVDNV--LLHTSH 147
           L+GI +F +YL+  K         M   ++  S+P  R +        VD V  +L    
Sbjct: 86  LAGIHAFFRYLQSEKPDM------MLQCQQVLSIPVKRTVKPTVNYLTVDAVKTILAMPD 139

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSV 206
            +     R+ A+L LLY  G R+SE + L P+++ +     + + GKG K R  PL   +
Sbjct: 140 TSTVYGMRDLALLGLLYDTGARVSELIELRPKDLRLAAPPVVTLFGKGRKSRQCPLSSEM 199

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQRYIRQLRRYLG--LPLST 260
              +++Y      D       PLF G   + L       +  +Y    R      +P   
Sbjct: 200 TGHLVKYLSAWGLDAPAKSDHPLFVGHNAEKLTRAGVAYILSKYASAAREKDASIIPTIV 259

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + H LRHS A HLL  G +L  I+  LGH  + TT+IY   +S+
Sbjct: 260 SPHMLRHSKAMHLLQAGVNLVYIRDWLGHASVKTTEIYARADSE 303


>gi|259909522|ref|YP_002649878.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224965144|emb|CAX56676.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 345

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 18/252 (7%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLVD 139
           + +  R+ + +L  ++ + ++L K+ +   +   ++   +    LPR  L+ +Q   +V+
Sbjct: 98  EPLSPRTQRTALQPLQVWFRWLAKQNLILANPAADLELPRLEKHLPRTILSVEQVEDIVN 157

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR 198
              L+T         R+ A+L LL+  G+R  E   L   +    +  L I QGKG + R
Sbjct: 158 LCDLNTLQ-----GMRDRALLELLWSTGIRRGEVARLETWSADFSRKILTIVQGKGKQDR 212

Query: 199 IVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLF---RGIRGKPLNPGVFQRYIRQLRRYL 254
           ++P+       +  Y +++ P  + +     LF    G+ G   N G+    +  LR   
Sbjct: 213 VIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVAGLTAN-GITHAVVPYLR-AA 270

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+    + H  RH+ AT +L NG DLR IQ++LGH  + +TQIYT V+ +     +  ++
Sbjct: 271 GIE-KGSCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRA----LQAVH 325

Query: 315 DQTHPSITQKDK 326
             THP+   +D+
Sbjct: 326 ASTHPAEQTEDE 337


>gi|330898871|gb|EGH30290.1| Phage integrase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 215

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 13/178 (7%)

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           AL + QA  L+D        E+     R+ A+L +L   GLR  EA  L   +I + +  
Sbjct: 27  ALGDHQAKALLD-----APDESTLKGLRDRAMLAVLLYHGLRREEAAQLQVSDIQERRGI 81

Query: 188 --LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             L+I GKG K+R +PL P     I  Y +     L+ + ++PLF  +RGKP + GV   
Sbjct: 82  QHLKIHGKGGKVRYLPLHPVAAGRIHLYLERSGHHLD-DKKVPLFIPLRGKPTDAGVSAN 140

Query: 246 ----YIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                +    +  G+ ++    H LR + AT+ L +  D+  +Q+ LGH  +STT+IY
Sbjct: 141 GIYTVVEAYAKKAGIEVAGLGVHGLRATAATNALDHEADIAKVQAWLGHANISTTKIY 198


>gi|171915255|ref|ZP_02930725.1| integron integrase [Verrucomicrobium spinosum DSM 4136]
          Length = 260

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/186 (34%), Positives = 88/186 (47%), Gaps = 41/186 (22%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAIL------- 211
           LLYGCGLR+ E L L  +++  D +  +I+   GKG K R+V L  S   A+        
Sbjct: 69  LLYGCGLRVMELLRLRIKDV--DLAGGKIEVRDGKGGKDRVVCLPGSAMAALQRQMERAK 126

Query: 212 ------EYYDLCPFDL---------NLNIQLPLFRGIRGKPL--NP--GVFQRYI---RQ 249
                 E  +L P  L         +     P F       L  +P  G  +R+    ++
Sbjct: 127 RVYEQDEMANLSPVWLPDAYATKNPSAGKSWPWFWLFPADKLATDPRSGTLRRHHSHEQR 186

Query: 250 LRRYL-------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           L R L       GL    TAHT+RHSFATHLL  G D+RS+Q +LGH  + TT+IYT + 
Sbjct: 187 LGRALSLAAKRAGLAKKVTAHTMRHSFATHLLLRGVDIRSVQELLGHADVRTTEIYTQLA 246

Query: 303 SKNGGD 308
               GD
Sbjct: 247 RAMRGD 252


>gi|161868003|ref|YP_001598184.1| Int2 [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|313116779|ref|YP_004032929.1| integrase/recombinase [Edwardsiella tarda]
 gi|161087382|gb|ABX56852.1| Int2 [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|312192416|gb|ADQ43902.1| integrase/recombinase [Edwardsiella tarda]
          Length = 363

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 108/217 (49%), Gaps = 20/217 (9%)

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP--RALNEKQALTLVDNVLLHTSHE 148
           +L G+      L+   + +  +I  +RNL+ S  LP  RAL + +    +  +      +
Sbjct: 140 ALKGVAKEAWMLRLMDVESFQHIRAVRNLRGSR-LPSGRALPQGE----IRALFAVCEAD 194

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
              + AR++A+L ++ GCGLR SE +SL  ++++     LR+ GKG+K R+  +     +
Sbjct: 195 RSCLGARDAAMLAVILGCGLRRSEVVSLDLRDVVTQDRALRVLGKGNKERLAYVPAGAWQ 254

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIR-------GKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            +  + D    ++      PLF  IR        +  +  V+  +I Q+R+        +
Sbjct: 255 RLQIWID----EIRGETPGPLFTRIRRFGDVTLNRLTDQAVY--HILQVRQGQAGITKCS 308

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            H LR +FAT +L NG DL +++  +GH  ++TTQ Y
Sbjct: 309 PHDLRRTFATAMLDNGEDLITVKDAMGHASVTTTQQY 345


>gi|149196595|ref|ZP_01873649.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149140275|gb|EDM28674.1| phage integrase [Lentisphaera araneosa HTCC2155]
          Length = 298

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 108/230 (46%), Gaps = 34/230 (14%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++K     +  F +Y+ KR    E   L +  + +  SLP  L++       D  LL  S
Sbjct: 67  TVKMDRCALSFFYQYVLKR----EWKWLEIVRIPRVKSLPDILSQ-------DETLLILS 115

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS 205
           H  K   AR    L  +Y  GLRISE + +   +I  D+  L ++  KG K R+VPL P 
Sbjct: 116 HLEK---ARYRTCLTAIYSMGLRISEGVRIQTGDICKDRMRLHVRNSKGYKDRLVPL-PQ 171

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---------LNPGVFQRYIRQLRRYLGL 256
           V   +L  Y    + ++ N  L LF    GK          ++ G  Q   +      GL
Sbjct: 172 VTYQMLRDY----WVMHRN-PLLLFPRYAGKSRSNSKTTLHMDKGGVQSAFKAALADSGL 226

Query: 257 PLSTTAHTLRHSFATHLLSNGGD----LRSIQSILGHFRLSTTQIYTNVN 302
               + H+LRHS+ATHL+  G +    LR IQ ILGH   +TT IY++++
Sbjct: 227 AKQVSVHSLRHSYATHLVEAGVEAGVNLRVIQEILGHSSPATTAIYSHLS 276


>gi|331004724|ref|ZP_08328177.1| hypothetical protein HMPREF0491_03039 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330408981|gb|EGG88441.1| hypothetical protein HMPREF0491_03039 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 346

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 138/303 (45%), Gaps = 24/303 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK-------ITIQTIRQLSYTE 70
           R  +L  L  E+  S+ T++SY    R+ L  L  + +EK       IT + + + + +E
Sbjct: 12  RSFFLAFLPEEQKCSQNTIRSY----RKSLELLFDFVKEKNSVALNEITFEMMDRSTISE 67

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
             +++   R   I  R+ +  L  I++F KY  +  IT  +++  ++ +K++   P  + 
Sbjct: 68  FLSYLETERNCSISTRNHR--LHCIRAFFKYAAQEDITVIAHLEEIQKVKRAKQ-PETIV 124

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLR 189
           E  +   V  +L      T+    R++ +L  LY  G R+ E + +   +I +     + 
Sbjct: 125 EHMSEDAVQAILEQPDTCTEK-GKRDTFLLLFLYKTGARVQELVDIRLCDIQLGKYPKVT 183

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF----RGIRGKPLNPGV--- 242
           I GKG K R +PL   V + + +Y  L   + NL     LF      IR +     V   
Sbjct: 184 IHGKGAKTRSIPLRDDVVQHLKKYLTLFHQEQNLFSDQYLFYVTRNQIRKRMTEDNVRKL 243

Query: 243 FQRYIRQLRRYLG-LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             +Y  Q R+    +P +   H  RHS+A  L  NG DL  I   LGH  L TT IY + 
Sbjct: 244 VAKYGVQARKICKEVPENVHPHLFRHSWAMILYQNGVDLTLISQWLGHSNLETTLIYAHA 303

Query: 302 NSK 304
           +++
Sbjct: 304 DTE 306


>gi|187921294|ref|YP_001890326.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187923078|ref|YP_001894720.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187714272|gb|ACD15496.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187719732|gb|ACD20955.1| integrase family protein [Burkholderia phytofirmans PsJN]
          Length = 291

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 133/294 (45%), Gaps = 38/294 (12%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ  + ++ + R L+  T   Y    R+F  FL   + +  T++ +R+        ++  
Sbjct: 12  RQRMIDDMRM-RQLAPKTQDIYLHIVREFARFLG-RSPDTATVEDLRRYQL-----YLVD 64

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             T  +   SL  +++G+K F      R       I+ M+ ++    LP  L+  +   L
Sbjct: 65  HGTSAV---SLNHAITGLKFFFTVTLDRP----ELIVRMQPVRVPRILPVVLSPDEVRRL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
           ++    +  H+T          L + YG GLR SE ++L   ++  ++ TLRI QGKG +
Sbjct: 118 IEAAG-NLKHQTA---------LSVAYGAGLRASEVVALKVTDVDSERMTLRIEQGKGRR 167

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R   L P + + +  ++ +      +     LF G+   PL+    Q   RQL R +  
Sbjct: 168 DRYAMLSPVLLERLRVWWRMARAQGKMFDGGWLFPGL--DPLD----QLSTRQLNRAIHA 221

Query: 257 PLS-------TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
                      + HTLRHSFATHLL    D+R IQ +LGH +L  T +Y  V +
Sbjct: 222 AAEAAHIDKRVSMHTLRHSFATHLLEQKVDIRVIQVLLGHAKLENTALYVQVAT 275


>gi|256545162|ref|ZP_05472528.1| tyrosine recombinase XerC [Anaerococcus vaginalis ATCC 51170]
 gi|256399203|gb|EEU12814.1| tyrosine recombinase XerC [Anaerococcus vaginalis ATCC 51170]
          Length = 331

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 108/219 (49%), Gaps = 8/219 (3%)

Query: 90  RSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           R +S ++SF KYL +     ++NI   +RN K     P  L   +   L++ V   +  +
Sbjct: 103 RKISALRSFYKYLHQEIEIIDNNITEKLRNPKIQKRQPVYLTLSETEHLLEIV---SQEK 159

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
            +++  R+ AI++     G+R+SE +S+  ++I DD     I GKG+K R + L  +   
Sbjct: 160 NEFLKNRDMAIVFTFLTTGMRLSELVSVDLKDIKDDH--FSIIGKGNKERTIYLTKNCID 217

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRH 267
            I  Y  +    L       LF   R + ++    Q  + +     G      + H LRH
Sbjct: 218 LIKNYIKIRKKYLKDKKIDALFISTRKQRISNRAVQSTVEKYLEKAGFDTKIYSTHKLRH 277

Query: 268 SFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSKN 305
           + AT +   G  D+R+++ +LGH  +STTQIYT+++ ++
Sbjct: 278 TAATLMYKYGNVDIRALKDVLGHESVSTTQIYTHLDDED 316


>gi|116625160|ref|YP_827316.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116228322|gb|ABJ87031.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 301

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 73/153 (47%), Gaps = 4/153 (2%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213
           R+  IL  LY  G+R +E   L  ++I  ++  L I QGKG K R VPL P +   +  +
Sbjct: 127 RHRTILMALYATGMRRAELCHLRIEDIDKERMVLHIRQGKGGKDREVPLPPKLLAQLRIH 186

Query: 214 YDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           Y   P         P  +  R  +P+         RQ     G+  S   HTLRH FATH
Sbjct: 187 YRALPH--RSAWVFPSLQSRRPDQPMTEKAVWHACRQAAWRAGITKSVHPHTLRHCFATH 244

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           LL NG +L  IQ +LGH     T IY ++ ++ 
Sbjct: 245 LLDNGAELPVIQVLLGHSDPRDTMIYLHLCTRQ 277


>gi|119356102|ref|YP_910746.1| integron integrase [Chlorobium phaeobacteroides DSM 266]
 gi|119353451|gb|ABL64322.1| integron integrase [Chlorobium phaeobacteroides DSM 266]
          Length = 338

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 117/276 (42%), Gaps = 52/276 (18%)

Query: 64  RQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +++   EI AF++    + K+   +  ++LS +    +++  ++I    +++  R   K 
Sbjct: 62  KEMREPEINAFLTHLAVEEKVSASTQNQALSALLFLYRHVIGKEIGDLGHLIRAR---KP 118

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI- 181
           + LP  L   +   L+  +        KW+ A       L+YG GLR+ E L L  Q+I 
Sbjct: 119 SHLPVVLTRDEVKALLVQLA-----GVKWLMAS------LMYGAGLRLMECLRLRVQDID 167

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY---------------------------- 213
                 L   GKG K RI  L  S++K + ++                            
Sbjct: 168 FSSNEILVRDGKGAKDRITMLPESLKKPLADHLKQIKSLHDKDLAEGWGRVLLPGALDRK 227

Query: 214 YDLCPFDLNLNIQLPLFR-------GIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           Y   P +       P          G  G+  ++  + Q+ ++    +  L    T HT 
Sbjct: 228 YPNAPAEWRWQWVFPQEHRWKNAKTGEEGRHHMDESLIQKAVKAAVFHAQLTKRATCHTF 287

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           RHSFATHLL  G D+R++Q +LGH  + TT IYT+V
Sbjct: 288 RHSFATHLLEGGYDIRTVQELLGHNDVRTTMIYTHV 323


>gi|9971650|dbj|BAB12601.1| intI2 [Escherichia coli]
 gi|50262989|gb|AAT72891.1| IntI2 [Shigella sonnei]
 gi|296881202|gb|ADH82143.1| IntI2 [Klebsiella pneumoniae]
 gi|296881208|gb|ADH82148.1| IntI2 [Klebsiella pneumoniae]
 gi|296881214|gb|ADH82153.1| IntI2 [Escherichia coli]
          Length = 325

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 88/196 (44%), Gaps = 55/196 (28%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR--IVP--LLPSV 206
           +D RN  I  LLYG GLRI+E L L  ++   D   + +  GKG K R  ++P  L+P++
Sbjct: 118 MDTRNQVIFTLLYGAGLRINECLRLRVKDFDFDNGCITVHDGKGGKSRNSLLPTRLIPAI 177

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY---IRQLRRYLGLPLST--- 260
            K ++E   L   D NL       +G+ G  L   +  +Y    RQ       P ST   
Sbjct: 178 -KXLIEQARLIQQDDNL-------QGV-GPSLPFALDHKYPSAYRQAAWMFVFPSSTLCN 228

Query: 261 -----------------------------------TAHTLRHSFATHLLSNGGDLRSIQS 285
                                              T HT RHSFATHLL  G D+R++Q 
Sbjct: 229 HPYNGKLCRHHLHDSVARKALKAAVQKAGIVSKRVTCHTFRHSFATHLLQAGRDIRTVQE 288

Query: 286 ILGHFRLSTTQIYTNV 301
           +LGH  + TTQIYT+V
Sbjct: 289 LLGHNDVKTTQIYTHV 304


>gi|94442304|dbj|BAE93651.1| integron integrase [uncultured bacterium]
          Length = 238

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 87/180 (48%), Gaps = 37/180 (20%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKG--DKIRIVP--LLPSVRKAILEY 213
           I  LLYG GLR++E+L L  Q+I   Q+ + I+ GKG  D++ I+P  L P +++ +   
Sbjct: 58  ITQLLYGAGLRLNESLRLRVQDIDFTQNQILIRDGKGAKDRVTILPQSLQPPLQEHLRRV 117

Query: 214 YDLCPFDLNLN---IQLP--LFRGI---------------------------RGKPLNPG 241
             L   DL      + LP  L R I                           R   L+  
Sbjct: 118 RILHDQDLEAGYGAVYLPDALARKIPNAAREWPWQWVFPASRISKDPRTGILRRHHLDSS 177

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           V Q+ +R   R   +P   T H  RHSFATHLL  G D+R++Q +LGH  + TT IYT+V
Sbjct: 178 VVQKAVRDAARRADIPKRVTPHVFRHSFATHLLEAGYDIRTVQELLGHKDVRTTMIYTHV 237


>gi|83860039|ref|ZP_00953559.1| transposase [Oceanicaulis alexandrii HTCC2633]
 gi|83852398|gb|EAP90252.1| transposase [Oceanicaulis alexandrii HTCC2633]
          Length = 615

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 132/291 (45%), Gaps = 26/291 (8%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +P I +  +   RQ  + ++ + R  S+ T ++Y  D  +F  FL    +   +      
Sbjct: 5   VPVISATPVSPLRQRLIDDMNM-RHFSRETQRNYIRDVGRFAAFLGRPPDTATS------ 57

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
               ++R F  ++R   +   ++   +S ++ F  +   R       ++ M+ ++K   L
Sbjct: 58  ---EDLRRFQVEQREAGMPIPTMNSVVSALRFFFTHTLDRP-DLARRLVRMKQMRK---L 110

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P  L+  +   L+                ++ A L + YG GLR+ E   L  +++  ++
Sbjct: 111 PVVLSRDEVARLLGATTC----------LKHQAALSVAYGAGLRVGEVAMLKVRDVDSER 160

Query: 186 STLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVF 243
             LR++ GKG + R   L   +   + +++ L      ++    LF G+   KP++    
Sbjct: 161 MLLRVERGKGGQYRNAMLPADLLTLLRQWWKLGREQGVMHHDGWLFPGLHAMKPISTRQL 220

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            R + +  +  G+    + HTLRHSFATHLL +G D+R IQ++LGH    T
Sbjct: 221 HRIVVEAAQAAGITKRVSPHTLRHSFATHLLEDGTDIRIIQALLGHVEACT 271


>gi|16611927|gb|AAL27410.1|AF429957_1 XerC-like protein [uncultured bacterium]
          Length = 312

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 111/246 (45%), Gaps = 32/246 (13%)

Query: 74  FISKRRTQKIGDRSLKRSLS-------GIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           + + +R+Q    R +  S+S        ++ FLK+L +R  T     L + + +    + 
Sbjct: 65  WFAAKRSQGGRGRRISVSISTLSQYERALRPFLKWLYQRGYTQTDLSLELPHYRPPKQVV 124

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILY-LLYGCGLRISEALSLTPQNIMDDQ 185
           +           D +    +  ++  +AR    LY LL   G+R  EA+SL    I   +
Sbjct: 125 QPFTP-------DELRAFFAAASEPPNARRKLALYRLLLDTGIRRGEAVSLQLDAIYWRE 177

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-------LFRGIRGKPL 238
            T+R++GK    RIV       +AI EY +        N + P       LF    G PL
Sbjct: 178 RTMRVEGKTGG-RIVYFSERSLRAINEYLN--------NERRPRRPGEATLFLDRHGDPL 228

Query: 239 NPG-VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
             G + Q  IR  RR   +      HT RH+FA   L  GGDLRS+Q +LGH +L TT I
Sbjct: 229 RAGEITQETIRIARRAGIMRDHVGPHTFRHTFAVEYLKAGGDLRSLQVLLGHSKLETTSI 288

Query: 298 YTNVNS 303
           Y +++S
Sbjct: 289 YLHMDS 294


>gi|209516756|ref|ZP_03265608.1| integrase family protein [Burkholderia sp. H160]
 gi|209502873|gb|EEA02877.1| integrase family protein [Burkholderia sp. H160]
          Length = 416

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 137/284 (48%), Gaps = 19/284 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-I 83
           L  ERGL + T++    +  Q L       + K    +++Q++  ++ A + +R  ++  
Sbjct: 130 LRTERGLCEETIEGRRHNVAQLL------EQMKERGHSLKQVTLAQLDALLLERYGERHY 183

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
             R+++    G+++F ++ + R       +  + +  + +  +LP + + +         
Sbjct: 184 APRTIQGHACGLRAFFQHAESRHWCPPGIAQGIQVPRVYRHATLPSSPSWQDV-----QR 238

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV 200
           LL+T+  ++  D R+ AIL LL   GLR  E   L  +++  +Q TL I   K  + +  
Sbjct: 239 LLNTTEGSRPTDIRDRAILLLLAVYGLRSGEVRRLRLEDLDWEQETLTITHSKSGRSQTY 298

Query: 201 PLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-L 258
           PL  +  +AI+ Y  ++ P      I LP+   +R  PLN     + + +  + L +P L
Sbjct: 299 PLSRTAGQAIIRYLKEVRPQCSCREIFLPMRAPLR--PLNSSAIFQLVNRRMKALDIPVL 356

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               H LRH+ AT L++ G  L++I   LGH  L TT+IY  V+
Sbjct: 357 HHGPHALRHACATRLINQGLPLKAIADQLGHRSLETTRIYAKVD 400


>gi|254431040|ref|ZP_05044743.1| integron integrase [Cyanobium sp. PCC 7001]
 gi|197625493|gb|EDY38052.1| integron integrase [Cyanobium sp. PCC 7001]
          Length = 323

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 139/311 (44%), Gaps = 61/311 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRS 87
           R  ++ T+ +YE   R++L F         +++  R++   E+ AF++      ++   +
Sbjct: 21  RHYARRTVTTYEQWLRRYLRF--------HSLRHPREMGSAEVNAFLTHLAVDLQVSAST 72

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++LS +    + L +R +   + ++  R  ++   LP  L  ++  +++         
Sbjct: 73  QNQALSALLFLYRELLERDLEL-AGVVRARTPRR---LPVVLTVEEVRSVLQR------- 121

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR--IVP--L 202
               +D   + +  LLYG GLR+ EAL L   ++   +  L ++ GKG K R  ++P  L
Sbjct: 122 ----LDGTEALVAGLLYGSGLRLMEALRLRVHDLDFGRQELTVRNGKGGKDRRTLLPRRL 177

Query: 203 LPSVRKAILEYYDLCPFDLNLN---IQLP--LFRGIRGKP-------------------- 237
              +R  + E   +   DL      +QLP  L R     P                    
Sbjct: 178 AEQLRPHLQEVKSIHQQDLAEGWGRVQLPHALGRKYPHAPVEWGWQWVFPQQTRWCNPAS 237

Query: 238 -------LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
                  ++P + Q+ +R+     G+    T  +LRHSFATHLL  G D+R+IQ +LGH 
Sbjct: 238 GEQGRHHMDPSLIQKAVRRAVLAAGISKPATCQSLRHSFATHLLERGQDIRTIQELLGHS 297

Query: 291 RLSTTQIYTNV 301
            L TT IYT+V
Sbjct: 298 DLKTTMIYTHV 308


>gi|228910970|ref|ZP_04074778.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           IBL 200]
 gi|228848625|gb|EEM93471.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           IBL 200]
          Length = 322

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 137/310 (44%), Gaps = 30/310 (9%)

Query: 8   EIVSFELLKERQNWLQNLEI------ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           EIV F    E  N  + ++I        G  K T+  Y   T+ F  F+     +K+ I 
Sbjct: 13  EIVDFIDTNEELNTERAIKIVTQAFQAEGFRKRTIDDY---TKLFRYFMRELNIDKVEII 69

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           T +      ++ +I+K  ++++   ++   +S +KS  K L ++     +  ++   L+ 
Sbjct: 70  TAKH-----VQMYINKLISRELAPATVNIRISALKSVFKRLHEQGYIKSNPAVDFVKLRT 124

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
             +    LN  Q        L     +T +   R+   + L+  CGLR++E   L   ++
Sbjct: 125 DEAPIFTLNNNQI-----KRLFCVVDKTTYAGYRDYCAMLLMLHCGLRVNEVNQLEANDL 179

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP-----FDLNLNIQLPLFRGIRGK 236
             D  T+ + G  +K R    +P  +K   E   L       F++  N+    F    G 
Sbjct: 180 DFDNLTIMLSGAKNKNRKTRAVPMTKKVAEELRMLIEESREYFEVTTNV----FLTHDGN 235

Query: 237 PLNPGVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            ++  + ++ + +  ++ GL      + H+LRH+FAT+ L NGG + ++  I+GH  ++T
Sbjct: 236 SIDNDLLRKRMYRYGQFAGLSKECRPSPHSLRHTFATNFLRNGGSVNALMRIMGHADITT 295

Query: 295 TQIYTNVNSK 304
           T  Y  +N +
Sbjct: 296 TMRYVRLNDE 305


>gi|227461189|gb|ACP39541.1| putative integron integrase [uncultured microorganism]
          Length = 316

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 41/189 (21%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKI-----------RI 199
           +D + + +  LLYG G+R+ E + L  Q++  D++ + ++ GKG K            R+
Sbjct: 130 MDGQVALMASLLYGTGMRLMECVRLRVQDVGFDRNEICVRNGKGGKDRRVPLPRRVRERL 189

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---------------------- 237
           +  +  VR  IL   DL      + +   L R   G                        
Sbjct: 190 LEQVERVR--ILHGQDLATGAGEVFLPHALARKYPGAGREFCWQYVFPSLRESKDPRSGK 247

Query: 238 -----LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                ++ GV QR ++  R   G+    + HTLRHSFATHLL +G D+R++Q ++GH  +
Sbjct: 248 RRRHHVDEGVLQRAVKIARDKAGIDKPASCHTLRHSFATHLLESGQDIRTVQELMGHKDV 307

Query: 293 STTQIYTNV 301
           STT IYT+V
Sbjct: 308 STTMIYTHV 316


>gi|255322209|ref|ZP_05363355.1| hydrogenase expression/formation protein [Campylobacter showae
           RM3277]
 gi|255300582|gb|EET79853.1| hydrogenase expression/formation protein [Campylobacter showae
           RM3277]
          Length = 354

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 77/142 (54%), Gaps = 7/142 (4%)

Query: 166 CGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
            G+R+SEAL+L  ++I +D     +RI+GKG+K R+V +    R+ I  + D    +  +
Sbjct: 202 TGIRVSEALNLKRKDIAEDGELYVIRIRGKGNKYRVVMI---KRRLIEAHLDAIAINY-I 257

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRS 282
           N +  LF   +G  L      R + Q+    G+      AH LRH+FAT L     DL  
Sbjct: 258 NKEGYLFINKKGTRLTQAYVSRIVEQILFKAGIRKEKNGAHMLRHTFATMLYKKQKDLVL 317

Query: 283 IQSILGHFRLSTTQIYTNVNSK 304
           +Q  LGH  L+T++IYT+ +S+
Sbjct: 318 VQEALGHASLNTSRIYTHFDSE 339


>gi|262202504|ref|YP_003273712.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262202581|ref|YP_003273789.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262204533|ref|YP_003275741.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262085851|gb|ACY21819.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262085928|gb|ACY21896.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262087880|gb|ACY23848.1| integrase family protein [Gordonia bronchialis DSM 43247]
          Length = 324

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 118/261 (45%), Gaps = 31/261 (11%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI---LNMRN----------LKKSNSLPR 127
           Q +  R++KR LS I    +YL+ R + T + +   L  R+          ++   +LPR
Sbjct: 75  QGLSARTIKRRLSSIAGLYEYLRIRGVVTANPVPRGLATRSPGRAVRGVPLIRAPRTLPR 134

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L+  QA   V +  L T  +   + A       +L G GLR  E L L   ++   +  
Sbjct: 135 VLDPAQADAFVAS--LRTDRDRAMVAA-------MLLG-GLRRCEVLGLGLNDLNPGERR 184

Query: 188 LRI-QGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIR-GKPLNPGVFQ 244
           + I +GKG   RIVP+      A+ +Y +   P D   +    + +G R G+PL+     
Sbjct: 185 VFIAEGKGGHQRIVPISTRFFTAVTDYLNRERPQDTATDRLFVVLKGPRRGQPLSAAGLD 244

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             I   RR  G+    T H LRH+  T L   G  L +IQS  GH  + +T+IY ++ + 
Sbjct: 245 EIIAGARRRAGIE-QLTCHQLRHTCFTRLREAGMALEAIQSQAGHRSIESTRIYLHLAN- 302

Query: 305 NGGDWMMEIYDQTHPSITQKD 325
              DW+   Y +   +I  ++
Sbjct: 303 ---DWLASEYRRAMEAIDAQN 320


>gi|315303917|ref|ZP_07874379.1| tyrosine recombinase XerD [Listeria ivanovii FSL F6-596]
 gi|313627714|gb|EFR96385.1| tyrosine recombinase XerD [Listeria ivanovii FSL F6-596]
          Length = 73

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 44/65 (67%), Gaps = 4/65 (6%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+    T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT+V        + ++Y
Sbjct: 11  GIEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLR----LKDVY 66

Query: 315 DQTHP 319
            Q HP
Sbjct: 67  KQFHP 71


>gi|228950288|ref|ZP_04112465.1| hypothetical protein bthur0007_63540 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228809450|gb|EEM55894.1| hypothetical protein bthur0007_63540 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 278

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 134/295 (45%), Gaps = 33/295 (11%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRAFISKRRTQK 82
           N E E G S  T++ Y      F  +L         ++T + + S ++++ ++    +QK
Sbjct: 9   NHEKEHGKSPETIRGYHYKLLHFEKWLG-------AVETDLYEFSRSDVQQYLDDLTSQK 61

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
               ++    + I+SF ++ KK     +  I+   NL +    P AL  K+ L ++  V 
Sbjct: 62  KSASTVNGHYAAIRSFSQFAKKTDCIKDIRIVKAPNLYRE--APVALERKEVLRILREV- 118

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRI-QGKGDKIRI 199
                  +  + R+ AIL      G+R++E +SL   +I   + Q T+R+ QGKG+K RI
Sbjct: 119 ------DRSGNKRDKAILLTCVYAGIRVAEIVSLDIDDISFSERQGTIRVRQGKGNKERI 172

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +PL    R AI +Y          +    LF   R   ++    +R ++ +    G+   
Sbjct: 173 IPLHKEARYAISDY-----LKTRESTAAALFLSNRQTRIS----KRTVQHICNKYGV--- 220

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
              H  RH+F T L+  G D ++IQ++ GH   +    Y +V  ++  + +  +Y
Sbjct: 221 -NPHQFRHTFVTDLVDAGIDDKTIQTLTGHESPAMITRYRSVRPEDKQNAIEALY 274


>gi|225867105|ref|YP_002752483.1| site-specific recombinase, phage integrase family [Bacillus cereus
           03BB102]
 gi|225786133|gb|ACO26350.1| site-specific recombinase, phage integrase family [Bacillus cereus
           03BB102]
          Length = 322

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 129/284 (45%), Gaps = 28/284 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G  K T+  Y   T+ F  F+      ++ I  +  ++   ++ +I+K  ++ +   ++ 
Sbjct: 41  GFRKRTIDDY---TKLFRYFM-----RELNIDRVEIITAKHVQMYINKLISRDLAPATVN 92

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             +S +KS  K L ++  T  +  ++   L+   +    LN  Q        L     +T
Sbjct: 93  IRISALKSIFKRLHEQGYTKSNPAIDFVKLRTDEAPIFTLNNNQI-----KRLFRVVDKT 147

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSV 206
            +   R+   + L+  CGLR++E   L   ++  D  T+ + G   K  K R VP+   V
Sbjct: 148 TYAGYRDYCAMLLMLHCGLRVNEVNQLEVNDLDFDNLTIMLSGAKNKNRKTRAVPMTKRV 207

Query: 207 ----RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-- 260
               R  I E  D   F++  N+    F    G  ++  + ++ + +  ++ GL      
Sbjct: 208 AEELRMLIEESRDY--FEVTTNV----FLTHDGNSIDNDLLRKRMYRYGQFAGLSKECRP 261

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + H+LRH+FAT+ L NGG + ++  I+GH  ++TT  Y  +N +
Sbjct: 262 SPHSLRHTFATNFLRNGGSVNALMRIMGHADITTTMRYVRLNDE 305


>gi|206976115|ref|ZP_03237024.1| prophage lambdaba03, site-specific recombinase, phage integrase
           family [Bacillus cereus H3081.97]
 gi|206745569|gb|EDZ56967.1| prophage lambdaba03, site-specific recombinase, phage integrase
           family [Bacillus cereus H3081.97]
          Length = 303

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 132/275 (48%), Gaps = 14/275 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           + +G ++ T+++   + +Q   FL    E++I+   +  ++   ++ ++  +  + +  +
Sbjct: 15  MAKGFTQKTMKNKRQEMKQLKRFLM--NEKRIS--ELEAINTLHLKQYVRTKHEEGLQPQ 70

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S+      +++F  + +K +   E NI     L K   +P+ L +   +  V  ++   S
Sbjct: 71  SIVAMSKIVRAFFSWCQKEEYLKE-NIAKKVELPK---VPKKLLKGFTVQEVSAMIEAFS 126

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
           ++  +I+ARN AI+ +L  CGLR  E   L  QN+   ++ + + GKG+K RI+ + P +
Sbjct: 127 YKN-YIEARNKAIVAMLSDCGLRAMEIRGLLTQNV--KETKILVNGKGNKERIMFISPPL 183

Query: 207 RKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAH 263
           +K ++ Y  L    L   I      F      PL+  G++        R        + H
Sbjct: 184 KKILIRYERLKKDYLKDRIVKTDHYFLSYTADPLSHMGIYNVIKEAGERVKIEEARCSPH 243

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           T RH FA   + NG D+ ++  +LGH  LSTTQ Y
Sbjct: 244 TFRHFFAVQCILNGVDILTLSKLLGHGDLSTTQRY 278


>gi|92112109|gb|ABE73743.1| class 1 integron integrase [Azoarcus communis]
          Length = 337

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 136/327 (41%), Gaps = 59/327 (18%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T  + +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLTWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVRKA 209
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R+ 
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 210 ILEYYD--------------------------------LCPFDLNLNIQLPLFRGIRGKP 237
           +    D                                   F  + +   P    +R   
Sbjct: 192 LSRARDWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFLVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQK 324
           YT+V  K GG  +    D   P  +++
Sbjct: 312 YTHV-LKVGGAGVRSPLDALPPLASER 337


>gi|193214734|ref|YP_001995933.1| integron integrase [Chloroherpeton thalassium ATCC 35110]
 gi|193088211|gb|ACF13486.1| integron integrase [Chloroherpeton thalassium ATCC 35110]
          Length = 355

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 137/321 (42%), Gaps = 67/321 (20%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           R  SK T ++Y    +QF+ F          ++  + +S  EI AF++    +K +    
Sbjct: 35  RPYSKRTQKAYCYWVKQFVYFY--------QLRHPKDMSEPEINAFLTHLAVEKKVSASP 86

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++LS +    +++  +++    +++  R   K   LP  L  ++    V +VL     
Sbjct: 87  QNQALSALLFLYRHVIGKELGDLGHVIRAR---KPIRLPVVLTREE----VKSVLTGLKA 139

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
           E KW+ A       L+YG GLR+ E L L   +I   ++ + I+ GKG K R+  L  S+
Sbjct: 140 E-KWLMAS------LMYGSGLRLMECLQLRIHDIDFSRNEIPIRDGKGAKDRLTMLPESL 192

Query: 207 RKAILEY----------------------------YDLCPFDLNLNIQLPLFRGIRGKPL 238
           +K + ++                            Y   P +       P  +  R K  
Sbjct: 193 KKPLADHLKRVKRIHDKDLADGWGRVILPNALDRKYPNAPAEWRWQWVFP--QENRWKNT 250

Query: 239 NPG----------VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           N G          + Q+ + +  R  GL    T HT RHSFATHLL +G D+R+IQ +LG
Sbjct: 251 NTGEEGRHHVHESIIQKAVTRAVRKAGLTKRATCHTFRHSFATHLLESGYDIRTIQELLG 310

Query: 289 HFRLSTTQIYTNVNSKNGGDW 309
           H  + T   Y ++ S N   W
Sbjct: 311 HKNVET---YNDLYSCNQSRW 328


>gi|291276943|ref|YP_003516715.1| DNA recombinase [Helicobacter mustelae 12198]
 gi|290964137|emb|CBG39982.1| DNA recombinase [Helicobacter mustelae 12198]
          Length = 354

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 81/158 (51%), Gaps = 15/158 (9%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
            R+ AI+ L+   G+RISEAL L  +++    D   L ++GKGDK R++ + P V +  L
Sbjct: 189 CRDRAIIKLIIYTGMRISEALYLGLKDLRLEGDFYLLNVRGKGDKTRVLMVRPRVLQEDL 248

Query: 212 EYYDLCPFDLNLNIQLP------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHT 264
           + +      L    ++P      LF    G PL+     R +  + +Y G+      AH 
Sbjct: 249 KQW------LTERAKIPTIEHHLLFCNKHGAPLSQAYIYRMVDSILQYAGIKKEKMGAHM 302

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           LRHSFAT L     DL  +Q  LGH  L T++IYT+ +
Sbjct: 303 LRHSFATLLYQKHKDLILVQETLGHASLDTSRIYTHFD 340


>gi|227461205|gb|ACP39547.1| putative integron integrase [uncultured microorganism]
          Length = 288

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 86/180 (47%), Gaps = 37/180 (20%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAIL------ 211
           +  LLYG GLR+ E L++  +++   +  L ++ GKG K R+  L  S+R  ++      
Sbjct: 109 VASLLYGSGLRLHEGLTVRVKDLDFARRELVVRNGKGQKDRVTLLPESLRDPLVGHLTRL 168

Query: 212 -EYYD----------LCPFDLNLNIQLP--------LF--RGIRGKP---------LNPG 241
            E+++            PF L               LF    I   P         L+PG
Sbjct: 169 REWFENERRQKRPGVSLPFALAKKYPAASVSWGWQYLFPSASICADPYSRLPVRHHLHPG 228

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             QR + +  R  GL    + HT RHSFATHLL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 229 TVQRGVARAVRAAGLAKPASCHTFRHSFATHLLDSGYDIRTVQELLGHSNVKTTMIYTHV 288


>gi|32471153|ref|NP_864146.1| integrase [Rhodopirellula baltica SH 1]
 gi|32396855|emb|CAD71823.1| integrase [Rhodopirellula baltica SH 1]
          Length = 227

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 106/233 (45%), Gaps = 27/233 (11%)

Query: 65  QLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           +LS  ++R ++  RR Q ++G      S+  I   LK+  +  +  +   L    L KSN
Sbjct: 11  KLSEAQVRQYVLLRRQQLQLG------SMRPIVGALKFFFRVTVPRDWPTLQAVRLPKSN 64

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           +LP+ L  ++   L+D  +   SH           I   +Y CGLR  +   L PQ++  
Sbjct: 65  TLPKVLVPERCWQLIDATV--ASHL--------QVIFRAMYSCGLRGVDVRHLRPQDVDA 114

Query: 184 DQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR-----GIRGKP 237
           D+  LR+   KG + R VPL  +   A   ++       N N   P  +         +P
Sbjct: 115 DRMMLRVCTTKGHRQREVPLPQATLDAFRAHWAT---HRNPNWLFPATQRNTPASKADQP 171

Query: 238 LNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           ++    QR   ++   LG   S  T HTLRHS+AT +L  G +L+ +Q  LGH
Sbjct: 172 ISARTIQRGFTKVTESLGWQDSGLTPHTLRHSYATAMLDAGVNLKVLQGYLGH 224


>gi|78224199|ref|YP_385946.1| integron integrase [Geobacter metallireducens GS-15]
 gi|78195454|gb|ABB33221.1| Integron integrase [Geobacter metallireducens GS-15]
          Length = 334

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 87/182 (47%), Gaps = 37/182 (20%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYD----L 216
           L+YG G+R+ E + L  +++  ++S + + +GKG K RI  L  +V   + E+      L
Sbjct: 143 LMYGTGMRLMETVRLRVKDVDFERSEIIVREGKGAKDRITMLPQAVAAPLREHLGRVEAL 202

Query: 217 CPFDLNLNI-QLPLFRGIRGKPLNPG-------VF------------------------Q 244
              DL     ++ L   +  K  N G       VF                        Q
Sbjct: 203 HGADLRAGFGEVHLPHALGKKYPNAGREWGWQYVFPAKQLSTDPRTGVTRRHHADEKGIQ 262

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R IRQ  R   L    T HTLRHSFATHLL +G D+R++Q +LGH  + TT IYT+V ++
Sbjct: 263 RAIRQAVRDAELAKPATPHTLRHSFATHLLQSGYDIRTVQELLGHKDVQTTMIYTHVLNR 322

Query: 305 NG 306
            G
Sbjct: 323 GG 324


>gi|227461184|gb|ACP39539.1| putative integron integrase [uncultured microorganism]
          Length = 317

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 127/306 (41%), Gaps = 58/306 (18%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YTNVNS 303
           YT+V S
Sbjct: 312 YTHVGS 317


>gi|188585853|ref|YP_001917398.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350540|gb|ACB84810.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 305

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/304 (21%), Positives = 138/304 (45%), Gaps = 15/304 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q+++++ E  + L++ T+  Y    ++F  F++   +E +    + Q   + I++++   
Sbjct: 8   QDFIEDREF-KNLTQKTISGYSATLKEFQEFIS--EQEVVNANDVTQ---SHIKSYLLHC 61

Query: 79  RTQKIGD-RSLKRSLSGIKSFLKYLKKRKITTES-NILNMRNLKKSNSLPRALNEKQALT 136
           +  K  +  S+   L  +K F  YL+  ++ +E  N     N  K +      N+ Q   
Sbjct: 62  KKNKNNNPTSINHKLHNLKIFFNYLQDIEVISEKQNPAKKINYVKEDIKIEVFNDYQIKQ 121

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           ++D        E  +   RN  I+  L G G R+ E ++L   +I    +T+   GK  +
Sbjct: 122 MLDYYRRIKRREKGFYAYRNYTIIVFLLGTGSRLGELINLRWDDIDFINNTIVFYGKKRE 181

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
              +P+   ++K ++EY   C      ++   +F   + + L     +   ++L++ +  
Sbjct: 182 YSSIPMTEKLKKELMEYKTYCEQTFE-SLSEYVFTNRKNEKLTDNAVKCIFKRLKKVMNF 240

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
             +  + HT RH+FA +++ N  D+ ++Q +L H  LS  + Y N      G  + E  D
Sbjct: 241 KNVRVSCHTFRHTFAVNMIKNNCDIFTLQKMLRHKDLSMCRRYVNF-----GTALKEQND 295

Query: 316 QTHP 319
           + +P
Sbjct: 296 KFNP 299


>gi|13475380|ref|NP_106944.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14026132|dbj|BAB52730.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 302

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 82/153 (53%), Gaps = 2/153 (1%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEY 213
           ++ A L + YG GLR++E  +L   +I  ++  +R++ GKG + R   L   +   + ++
Sbjct: 127 KHQAALSVAYGAGLRVAEVSALKVADIDSERMLIRVERGKGGRYRNAMLSQDLLLLLRQW 186

Query: 214 YDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           + +      ++    LF G    KP++     R + +  +   +      HTLRHSFATH
Sbjct: 187 WKVGRQQGVMHRDGWLFPGQHAMKPISTRQLYRVVVEAAQAADIAKRVGPHTLRHSFATH 246

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           LL +G D+R IQ +LGH +L++T  YT V ++ 
Sbjct: 247 LLEDGTDIRIIQVLLGHAKLNSTAFYTKVATRT 279


>gi|183220599|ref|YP_001838595.1| putative integrase/recombinase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910707|ref|YP_001962262.1| site-specific recombinase XerD [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775383|gb|ABZ93684.1| Site-specific recombinase XerD [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167779021|gb|ABZ97319.1| Putative integrase/recombinase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 298

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 77/148 (52%), Gaps = 9/148 (6%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDL 216
           +I  LLY  G+RI E LSL   +I  ++  + I+ GKG   R   L       + +Y ++
Sbjct: 120 SIFTLLYSSGIRIGEGLSLQLSDIDFERKAIFIRSGKGGHGRYAILADKTALLLRQYLEI 179

Query: 217 CPFDLNLNIQLPLFRGIRGK--PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                  N +  LF   +GK  P++P   Q   +++R    +    T HTLRHSFATHLL
Sbjct: 180 ------YNPKSYLFFSQKGKNIPISPRTIQAAFQKIRNLSKIQKYATVHTLRHSFATHLL 233

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +G  L  IQ +LGH  + +T IY +V+
Sbjct: 234 EDGYSLVYIQKLLGHADIKSTMIYLHVS 261


>gi|91786616|ref|YP_547568.1| phage integrase [Polaromonas sp. JS666]
 gi|91695841|gb|ABE42670.1| phage integrase [Polaromonas sp. JS666]
          Length = 331

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 130/299 (43%), Gaps = 37/299 (12%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L++L  ER L+  T +SY     Q L F++    + +    +  +S   +R F+S   T 
Sbjct: 16  LEHLVSERNLAANTRRSYRDTMCQLLPFVSGRLHKAVDRLAVVDVSPQLVREFLSDVETH 75

Query: 82  K-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD- 139
           +  G  +  + L+ I +  +++       E +  ++    +   +P     + ++  +D 
Sbjct: 76  RGCGIATRNQRLAAIHALARFVG------EHSPEHIAWCAQVRCVPYKKGTQASVPYLDK 129

Query: 140 ---NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
              + LL   +       R+ A+L  LY  G R SEA  L   ++  DQ+++ I GKG K
Sbjct: 130 AEIDALLACPNRRTEQGGRDYALLLFLYNTGARASEASELIVGDLHLDQASVDILGKGRK 189

Query: 197 IRIVPLLPS----VRKAILEYYDLCPFDLNLNIQLPLFRGI---------RGKPLNPGVF 243
            R  PL P+    +R  + E        LN   Q     G+         R K   P + 
Sbjct: 190 RRQCPLWPATVRELRALVGERSRHEHVFLNRCGQPTTRFGVHALVERTAARAKDFMPSLA 249

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            + +             + H++RHS A+HLLS G D+ ++++ LGH  L TT +Y  ++
Sbjct: 250 MKRV-------------SPHSIRHSTASHLLSAGVDINTVRAWLGHASLDTTNVYAEID 295


>gi|170293805|gb|ACB12942.1| putative site specific tyrosine recombinase [Thauera sp. E7]
          Length = 282

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 7/150 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRI-QGKGDKIRIVPLLPSVRKAIL 211
           R   +L   Y  GLR+SE  +L   +I    D+  +R+  GKG K R   L PS+ +A+ 
Sbjct: 119 RARTLLMTAYAAGLRVSEVCALRVADIDSAPDRMCIRVVAGKGGKDRYTLLSPSLLEALR 178

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
            Y+ +C       + L        +P +    QR   + R   G+  +   HTLRH+FAT
Sbjct: 179 VYWRIC----KPRVWLFPRATDAAQPYDISSAQRAYYRARDRAGITKTGGIHTLRHAFAT 234

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           HLL  G DL ++  +LGH  LSTTQ Y ++
Sbjct: 235 HLLEAGVDLATLAKLLGHGHLSTTQRYLHL 264


>gi|78045912|ref|YP_362087.1| putative integrase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78034342|emb|CAJ21987.1| putative integrase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 349

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 39/178 (21%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD----- 215
           LLYG G+R+ E L L  +++   +  + ++ GKG K R VP   S+R  +++  +     
Sbjct: 165 LLYGSGMRLLECLRLRIKDVDVVRGEIVVRDGKGGKDRRVPPPHSLRGELMQQRERALLL 224

Query: 216 ------------LCPFDL-----NLNIQLP---LFRGIRGKPLNP------------GVF 243
                         P  L     N N++     LF   R + ++P             V 
Sbjct: 225 HAADLAEGAGRVFLPHALARKYPNANVEPGWQYLFLAAR-RSVDPRSGRVGRHHVSEEVL 283

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           QR ++  RR  G+    T HTLRHSFATHLL  G D+R++Q +LGH  ++T QIY +V
Sbjct: 284 QRAVQSARRQAGIAKPATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVTTKQIYAHV 341


>gi|325929257|ref|ZP_08190393.1| integron integrase [Xanthomonas perforans 91-118]
 gi|60550151|gb|AAX24163.1| truncated integrase [Xanthomonas perforans]
 gi|60550154|gb|AAX24165.1| truncated integrase [Xanthomonas perforans]
 gi|325540396|gb|EGD12002.1| integron integrase [Xanthomonas perforans 91-118]
          Length = 315

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 39/178 (21%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD----- 215
           LLYG G+R+ E L L  +++   +  + ++ GKG K R VP   S+R  +++  +     
Sbjct: 131 LLYGSGMRLLECLRLRIKDVDVVRGEIVVRDGKGGKDRRVPPPHSLRGELMQQRERALLL 190

Query: 216 ------------LCPFDL-----NLNIQLP---LFRGIRGKPLNP------------GVF 243
                         P  L     N N++     LF   R + ++P             V 
Sbjct: 191 HAADLAEGAGRVFLPHALARKYPNANVEPGWQYLFLAAR-RSVDPRSGRVGRHHVSEEVL 249

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           QR ++  RR  G+    T HTLRHSFATHLL  G D+R++Q +LGH  ++T QIY +V
Sbjct: 250 QRAVQSARRQAGIAKPATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVTTKQIYAHV 307


>gi|88857306|ref|ZP_01131949.1| site-specific recombinase IntI4 [Pseudoalteromonas tunicata D2]
 gi|88859550|ref|ZP_01134190.1| site-specific recombinase IntI4 [Pseudoalteromonas tunicata D2]
 gi|88818567|gb|EAR28382.1| site-specific recombinase IntI4 [Pseudoalteromonas tunicata D2]
 gi|88820503|gb|EAR30315.1| site-specific recombinase IntI4 [Pseudoalteromonas tunicata D2]
          Length = 323

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 82/185 (44%), Gaps = 39/185 (21%)

Query: 162 LLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAI---------- 210
           LLYG GLR+ EA+ L    I  D  S +   GKG K R V L P +  A+          
Sbjct: 130 LLYGSGLRLMEAVRLRVAAIDFDYLSIMVWHGKGGKHRRVTLAPELVPALKRQTSLVEAY 189

Query: 211 ----LEYYDLC----PFDL---------NLNIQLPLFRG----------IRGKPLNPGVF 243
               LE  D      PF L          L  Q     G          +R   ++    
Sbjct: 190 YQQDLETADYAGVWLPFALARKYPSAPKELGWQYLFPSGKLSIDPDSTLLRRHHIDESGL 249

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           Q+ ++   R   +    + HTLRHSFATHLL  G D+R++Q  LGH  + TTQIYT+V  
Sbjct: 250 QKAVKSASRKAAIGKHVSCHTLRHSFATHLLQAGMDIRTVQEQLGHSDVKTTQIYTHV-L 308

Query: 304 KNGGD 308
           K GG+
Sbjct: 309 KQGGN 313


>gi|197336974|ref|YP_002158308.1| site-specific recombinase IntIA [Vibrio fischeri MJ11]
 gi|197314226|gb|ACH63675.1| site-specific recombinase IntIA [Vibrio fischeri MJ11]
          Length = 327

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 106/226 (46%), Gaps = 50/226 (22%)

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
           L  +  KK+  LP   +  +A+++++ +    +H TK I         L+YG GLRI+EA
Sbjct: 99  LEFKRSKKATKLPTVFSHSEAISVINEL----NHPTKLI-------AQLMYGSGLRINEA 147

Query: 174 LSLTPQNIMDDQSTLRIQ-GKGDKIR-------IVPLLPSVRKAILEYYDLCPFDLNLNI 225
           L L   +I     T+ I+ GKG+K R       I+  L +    + + + +   + +  +
Sbjct: 148 LRLRVDDIDLIHKTITIRNGKGNKDRTTVLPEIIISELKTQLAFVKQQHKVDAINGDDEV 207

Query: 226 QLP------------------LF--RGIRGKP----------LNPGVFQRYIRQLRRYLG 255
            LP                  +F  + I   P          L+  V Q+ +    + L 
Sbjct: 208 YLPNAIAKKYPHRAKSYGWQYVFPSKQISKDPRSGQRRRHHMLDRSV-QKQVTNAIKKLE 266

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +    ++HT RHSFAT +L  GGDLR+IQ +LGH  + TTQIYT+V
Sbjct: 267 IDKKASSHTFRHSFATRILERGGDLRTIQELLGHSDIKTTQIYTHV 312


>gi|331269495|ref|YP_004395987.1| integrase/recombinase [Clostridium botulinum BKT015925]
 gi|329126045|gb|AEB75990.1| integrase/recombinase, putative [Clostridium botulinum BKT015925]
          Length = 274

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 124/275 (45%), Gaps = 39/275 (14%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T+ SY  D  QF  +L   T +K  ++ I+     E + F+   +  KI  +++ R 
Sbjct: 18  SEKTIDSYIRDISQFNDYLK--TNKKKLVK-IKLSDIDEFKNFLIYDKELKI--KTINRK 72

Query: 92  LSGIKSFLKY------LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           L  I  +LK+      +K+ K+  ++ + +M + +    + +A   K             
Sbjct: 73  LVSINQYLKFNNISVDIKQEKVQMQNFLDDMLSNQDIEDIIKATYAKD------------ 120

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
                  D R   I+Y LY  G+R+SE L LT  +    +S++ I GKG K R V  +P+
Sbjct: 121 -------DVRARTIIYTLYYTGMRVSEMLQLTIYDTK--KSSISIIGKGSKHREV-FVPN 170

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHT 264
             K I + Y      + +     LF G RG P+N       I+      G+  S   AH 
Sbjct: 171 KLKTIWDNY----MQVRIKKSTALFTGKRG-PINRKTVDSIIKTYAETAGVDKSKAHAHN 225

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            RH +  +L   G D+ +I  I GH  ++TT+IYT
Sbjct: 226 FRHLYCKNLADRGIDISTIADIAGHQNINTTRIYT 260


>gi|301057343|ref|ZP_07198461.1| integron integrase [delta proteobacterium NaphS2]
 gi|300448573|gb|EFK12220.1| integron integrase [delta proteobacterium NaphS2]
          Length = 326

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/181 (33%), Positives = 84/181 (46%), Gaps = 39/181 (21%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSV---------- 206
           ++ LLYG GLR  EAL L   +I  D  Q T+R  GKG+K R+ P   S+          
Sbjct: 130 VVKLLYGSGLRAMEALRLRVHDIDYDLRQITVR-SGKGNKDRVTPFPVSLAPLLQSHLTR 188

Query: 207 -----RKAILEYYDLCPFDLNLNIQLP----------LFRG-----------IRGKPLNP 240
                 K I + Y        L  + P          +F              R   ++P
Sbjct: 189 VKAIHEKDITDGYGAVYLPYALERKYPNAAKEWQWQYIFPSGSLSRDPESGRTRRHHIDP 248

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            V  + I+   +  G+    ++HT RHSFATHLL  G D+R+IQ++LGH  LSTT IYT+
Sbjct: 249 SVINKAIKAAAKRAGIHKRISSHTFRHSFATHLLERGTDIRTIQTLLGHSDLSTTMIYTH 308

Query: 301 V 301
           V
Sbjct: 309 V 309


>gi|284008020|emb|CBA74104.1| phage integrase [Arsenophonus nasoniae]
          Length = 318

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 98/213 (46%), Gaps = 11/213 (5%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L  IK   +  +  ++    N  +++N+K+      +       T + ++      +T  
Sbjct: 90  LCAIKGVAEEARASRLMDADNYHDVKNIKRIRGARISRGRMLECTEIKHLFTFLDIQTTG 149

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
              R++A++ L++GCGLR SE   L   +I  + + + I GKG+K RI  + P   K + 
Sbjct: 150 AAIRDAALISLMFGCGLRRSEVADLDIDHIDFENNKIDIHGKGNKERINYMPPETAKRMS 209

Query: 212 EYYDLCPFDLNLNIQLPLFRGIR------GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            + D    D +     PLF  IR         L        I+QL   L L L  T H L
Sbjct: 210 LWVDTVRGDHS----GPLFTRIRKNDDVTSDRLTTNGIGFIIKQLVTKLSLKL-FTPHDL 264

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           R S+A+ LL NG D+ +++  LGH  + TTQ Y
Sbjct: 265 RRSYASLLLENGEDILTVKEALGHASVVTTQQY 297


>gi|208972754|gb|ACI32876.1| IntI2 [Escherichia coli]
          Length = 325

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/189 (33%), Positives = 89/189 (47%), Gaps = 41/189 (21%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR--IVP--LLPSV 206
           +D RN  I  LLYG GLRI+E L L  ++   D   + +  GKG K R  ++P  L+P +
Sbjct: 118 MDTRNQVIFALLYGAGLRINECLRLRVKDFDFDNGCITVHDGKGGKSRNSLLPTRLIPVI 177

Query: 207 RKAILEYYDLCPFDLNL---NIQLPLFRGIRGKP-------------------------- 237
            K ++E   L   D NL      LP F   R  P                          
Sbjct: 178 -KQLIEQARLIQQDDNLQGVGPSLP-FALDRKYPSAYRQAAWMFVFPSSTLCNHPYNGKL 235

Query: 238 ----LNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
               L+  V ++ ++   +  G+     T HT RHSFATHLL  G D+R++Q +LGH  +
Sbjct: 236 CRHHLHDSVARKALKAAVQKAGIVSKRVTCHTFRHSFATHLLQAGRDIRTVQELLGHTDV 295

Query: 293 STTQIYTNV 301
            TTQIYT+V
Sbjct: 296 KTTQIYTHV 304


>gi|254827675|ref|ZP_05232362.1| tyrosine recombinase XerC subunit [Listeria monocytogenes FSL
           N3-165]
 gi|258600054|gb|EEW13379.1| tyrosine recombinase XerC subunit [Listeria monocytogenes FSL
           N3-165]
          Length = 291

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 116/264 (43%), Gaps = 34/264 (12%)

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR- 127
            E R  +S  R  ++   ++   ++ IK F  YL   K     N  +   +K + S P+ 
Sbjct: 47  VEYRKILSSMR-NRLSKNTMYSYVNVIKRFYDYLIDFKFYNGKNPFSSSVVKITASKPKN 105

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILY------LLYGCGLRISEALSLTPQNI 181
            L E + L +            K  D  +    Y       LY  G+R++E ++L   + 
Sbjct: 106 VLYEDEILDIY-----------KIFDMEDKTTGYQEFLFDFLYSTGIRLAEFINLNIYDF 154

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR---GKPL 238
             +   + + GKG+K RIV    S+ + +L Y       +  + +   +  I    G+ L
Sbjct: 155 DFENRVITVVGKGNKERIVVYNESLEQTMLSYLKARQAIMKFHRKSHSYFLIDFNTGQRL 214

Query: 239 NPG-VFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
               V+   IR     +G  +      H LRHSFATHLL NG DLR IQ +LGH  +STT
Sbjct: 215 KAARVYNEIIR-----VGDIVHRKIHPHMLRHSFATHLLENGCDLRYIQELLGHSSVSTT 269

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHP 319
           +IYT V  K   + +++     HP
Sbjct: 270 EIYTKVQLKQKQNTILKF----HP 289


>gi|153000221|ref|YP_001365902.1| phage integrase family protein [Shewanella baltica OS185]
 gi|151364839|gb|ABS07839.1| phage integrase family protein [Shewanella baltica OS185]
          Length = 296

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 82/155 (52%), Gaps = 14/155 (9%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAIL 211
           R       LY  GLR+ EA+SL   +I  D   +++     KG K R+VPL P      L
Sbjct: 125 RYQVCFLTLYSMGLRLGEAISLQVGDI--DAGLMQVHIRDAKGGKDRLVPL-PQRTLLAL 181

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKP---LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            YY    +  + + +  LF G   +P   ++ G  Q+ ++Q+     +  + + H+LRHS
Sbjct: 182 RYY----WRTHRHPRW-LFPGKDNQPDSLMDRGGLQKAMKQVIAECNIHKAISPHSLRHS 236

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +ATHLL  G DLRS+Q++LGH  L+TT  YT +  
Sbjct: 237 YATHLLEQGLDLRSVQTLLGHHSLNTTARYTRLTD 271


>gi|116622414|ref|YP_824570.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116626674|ref|YP_828830.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225576|gb|ABJ84285.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229836|gb|ABJ88545.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 412

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 122/285 (42%), Gaps = 28/285 (9%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKI--TIQTIRQLSYTEIRAFISKRRTQKIGD 85
           ERGLS  TL  Y     QFL        E+    + +   +  T +  F+  R  +++  
Sbjct: 130 ERGLSPSTLLHYVPVAEQFL-------AERFHNAVPSFAMIRATHVTGFV-LRHARQLSP 181

Query: 86  RSLKRSLSGIKSFLKYLKKRKITT---ESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
                 ++ ++SF +YL+ R +      + +  + N   S +LPR L            +
Sbjct: 182 VRAGLMVTALRSFFRYLRHRGVIATDLAACVPTVPNWSLS-TLPRFLPAAAV-----ERI 235

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
           L     T  +  RN  IL LL   G+R  E + L+  +I      + I+GKG K   +PL
Sbjct: 236 LECCDRTTSVGRRNHTILLLLARLGVRAGEVVGLSLDDIDWSTGQITIRGKGGKSAQLPL 295

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL----NPGVFQRYIRQLRRYLGLPL 258
           +  V  A+ +Y      D   +    +F   R  PL    N       +R+  ++ G+  
Sbjct: 296 VNDVGSALADYLR---HDRPRSATRRVFLRHRA-PLVGFGNSSTISSLVRRALKHAGVES 351

Query: 259 S-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           + T AH LRHS AT LL  GG L  I  +L H   +TT IY  V+
Sbjct: 352 AHTGAHVLRHSLATSLLRQGGSLDEIGELLRHQSPNTTAIYAKVD 396


>gi|134298831|ref|YP_001112327.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134051531|gb|ABO49502.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 324

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 127/277 (45%), Gaps = 33/277 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GLS+ T+  Y    R+ ++  A Y       + +++++  +IR ++S R    I   +++
Sbjct: 63  GLSEKTIDKY----RKTILDFAKYVN-----KPLKRITTADIRTWLSNR---DIKISTVR 110

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD--NVLLHTSH 147
             L+ ++SF  YL   +I        +++ K    +P+ALN  +   L +  N L     
Sbjct: 111 YRLAVLRSFYNYLLAEEIVAVDPTRRIKSPKLEKRIPKALNNDELEVLREGCNTL----- 165

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
                  R  A+L + Y  G RI E       +I   + +L + GKG+K RIV +     
Sbjct: 166 -------REKALLEIFYATGCRIGEVFGANKIDINWQERSLVVLGKGNKERIVFIGARAA 218

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGK--PLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            ++ +Y      +   + +  LF   +GK   L+    Q   +++   + +  +   H  
Sbjct: 219 HSLKKY-----LNSRQDNEDALFVTEKGKIQRLSVRSIQLIFKKIANRVVIHKNIYPHIF 273

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           RH+ AT LL++G  L  +Q +LGH   STTQIY  V+
Sbjct: 274 RHTLATALLNHGARLEDVQDLLGHTNPSTTQIYCKVS 310


>gi|89147375|gb|ABD62548.1| integrase [uncultured bacterium]
          Length = 163

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 47/69 (68%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R   ++P V QR +R   R  G+    T HTLRHSFATHLL +G D+R++Q +LGH  +
Sbjct: 94  VRRHHVDPQVIQRALRDALRRAGISKPATPHTLRHSFATHLLESGYDIRTVQELLGHKDV 153

Query: 293 STTQIYTNV 301
           STT IYT+V
Sbjct: 154 STTMIYTHV 162


>gi|310695289|gb|ADP05693.1| putative integrase [uncultured microorganism]
          Length = 319

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 129/277 (46%), Gaps = 54/277 (19%)

Query: 64  RQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKK 121
           R++   E+  F+++   + K+   +  ++LS     L +L ++ +  E   + N+R  K+
Sbjct: 58  REMGAVEVEWFLTELAVKGKVAASTQNQALSA----LLFLYRKVLGQELPWMENIRRAKR 113

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
            + LP  L   +    V  +L   S  T  + +       LLYG GLR+ E + L  Q++
Sbjct: 114 PDRLPIVLTFDE----VSRILGRMSGTTHLMAS-------LLYGSGLRLMECVRLRVQDV 162

Query: 182 -MDDQSTLRIQGKGDKIR--IVPLLPS-------VRKAILEYYDLCPFDLNLNIQLPLFR 231
            +  +  L   GKG K R  ++P++ +       ++  IL   DL     ++ +   L R
Sbjct: 163 DLLRREILVRHGKGGKDRRTVLPIMVAAAFQAHLIQIRILHERDLQAGHGDVWLPSALER 222

Query: 232 GI---------------RGKPLNP--GV----------FQRYIRQLRRYLGLPLSTTAHT 264
                            R + ++P  GV           QR +R   +  G+    T HT
Sbjct: 223 KYPNAAREWIWQYAFPSRSRSIDPRSGVERRHHVDEKTLQRAVRIAVQAAGIDKPATCHT 282

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LRHSFATHLL +G D+R+IQ +LGH  +STT IYT+V
Sbjct: 283 LRHSFATHLLESGSDIRTIQGLLGHSDVSTTMIYTHV 319


>gi|299538024|ref|ZP_07051310.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1]
 gi|298726606|gb|EFI67195.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1]
          Length = 298

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 94/211 (44%), Gaps = 14/211 (6%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKK-SNSLPRALNEKQALTLVDNVLLHTSHETK 150
           LS + SF K+        +S ++  R + K    LPR L E++               ++
Sbjct: 87  LSILSSFFKFCLAEDYM-DSIVMRKRWVPKLPQPLPRFLTEQE--------YARVKMASE 137

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
            +  R+ AI+  L+  G R SE  +L  QN+   Q T  ++GKG KIR V         +
Sbjct: 138 QLSLRDRAIVLFLFTSGCRRSEVANLLIQNVDVKQRTAEVRGKGKKIRKVHFSVECALVL 197

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            +Y     +  +     PLF    G+ L          +L R  GL  S   H  RH+FA
Sbjct: 198 KDYL----WTRSGVATEPLFLNKYGEKLQQSGIYEITTKLGRLAGLEQSLHPHCCRHTFA 253

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T++L+ G +L  I   +GH  L+TT++Y  +
Sbjct: 254 TNMLAKGAELEFIADEMGHTNLNTTRVYARI 284


>gi|66044755|ref|YP_234596.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
 gi|63255462|gb|AAY36558.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 319

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 124/290 (42%), Gaps = 31/290 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W  N++  R     T ++Y+ D + F  F+     E+      R ++   + A+ ++   
Sbjct: 32  WFANIDNPR-----TRRAYQIDLQDFCSFVGLAGAEEF-----RAVTRAHVLAWRARLEK 81

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVD 139
           + +   +++R L+ + S   +L       E+N +   N       PR   NE +   L D
Sbjct: 82  RGLAGATIRRKLAALASLFDHL------LENNAVAGGNPVHGVKRPRIESNEGKTPALAD 135

Query: 140 N---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194
           +    LL           R+ A+L +L   GLR  E   L   ++ + +    LR+ GKG
Sbjct: 136 HQAKALLDAPPADSLKGLRDRAVLAVLLYHGLRREEGAQLKTSDLQERRGIKHLRVNGKG 195

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            K+R +PL P   + I  Y +    DL        LFR +RG+    G+    I ++  +
Sbjct: 196 GKLRWLPLHPVAAERIYAYMEK---DLERGAGNGSLFRSLRGRASGTGLSADGIYKIVCH 252

Query: 254 LGLPLST-----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             +           H LR + AT+ L +  D+  +Q  LGH  +STT++Y
Sbjct: 253 WAMSAGIKVDGLGVHGLRATAATNALEHDADIAKVQIWLGHANISTTRLY 302


>gi|88812879|ref|ZP_01128123.1| Integron integrase [Nitrococcus mobilis Nb-231]
 gi|88789801|gb|EAR20924.1| Integron integrase [Nitrococcus mobilis Nb-231]
          Length = 194

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 37/182 (20%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVP--LLPSVRK-------- 208
           LLYG GLR+ E + L  +++  D+  + +   +G  D++ ++P  + PS+ +        
Sbjct: 4   LLYGAGLRLLECVRLRVKDVELDRRQIVVRDRKGGRDRVTLLPESMRPSLEEQIDRVREI 63

Query: 209 ----------------AILEYYDLCPFDLNLNIQLPLFR-------GIRGKP-LNPGVFQ 244
                           A+   Y   P +       P  +       G  G+  + P   Q
Sbjct: 64  HNQDLADGFGAVWLPHALARKYPNAPREFGWQYMFPSAKRSTDPRSGRVGRHHIEPKSLQ 123

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R ++Q  R  G+    + HT RHSFATHLL  G D+R+IQ +LGH  ++TT IYT+V + 
Sbjct: 124 RAVKQAVRAAGVSKPASCHTFRHSFATHLLEAGYDIRTIQELLGHRDVNTTMIYTHVANC 183

Query: 305 NG 306
            G
Sbjct: 184 GG 185


>gi|294141273|ref|YP_003557251.1| site-specific recombinase, phage integrase family [Shewanella
           violacea DSS12]
 gi|294141423|ref|YP_003557401.1| site-specific recombinase, phage integrase family [Shewanella
           violacea DSS12]
 gi|293327742|dbj|BAJ02473.1| site-specific recombinase, phage integrase family [Shewanella
           violacea DSS12]
 gi|293327892|dbj|BAJ02623.1| site-specific recombinase, phage integrase family [Shewanella
           violacea DSS12]
          Length = 296

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 14/151 (9%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAIL 211
           R       LY  GLR+ EA+SL   +I  D   +++     KG K R+VPL     +A+ 
Sbjct: 125 RYQVCFLTLYSMGLRLGEAISLRVGDI--DSQIMQVHIRNAKGGKDRLVPLPKRTLQALR 182

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKP---LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            Y+         +    LF G   +P   ++ G  Q+ ++++     +  S + H LRHS
Sbjct: 183 YYWK------THHHPRYLFPGKDSQPDSLIDKGGIQKALKRVIGECNIHKSISPHNLRHS 236

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           +ATHLL  G DLRS+QS+LGH  L+TT  YT
Sbjct: 237 YATHLLEQGLDLRSVQSLLGHNSLNTTARYT 267


>gi|190015612|ref|YP_001967367.1| site-specific tyrosine recombinase XerS [Bacillus cereus]
 gi|208702064|ref|YP_002267276.1| integrase/recombinase, phage integrase family [Bacillus cereus
           H3081.97]
 gi|217956900|ref|YP_002335996.1| site-specific tyrosine recombinase XerS [Bacillus cereus AH187]
 gi|229142253|ref|ZP_04270775.1| Integrase [Bacillus cereus BDRD-ST26]
 gi|116584519|gb|ABK00636.1| phage integrase family protein [Bacillus cereus]
 gi|208657919|gb|ACI30289.1| integrase/recombinase, phage integrase family [Bacillus cereus
           H3081.97]
 gi|217068588|gb|ACJ82836.1| integrase/recombinase, phage integrase family [Bacillus cereus
           AH187]
 gi|228641191|gb|EEK97500.1| Integrase [Bacillus cereus BDRD-ST26]
          Length = 361

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 137/332 (41%), Gaps = 45/332 (13%)

Query: 16  KERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL-----AFYTEEKIT------IQT 62
           K +  W  ++  E++  LS  TL +Y  +  +FL +L     A    + +T      I T
Sbjct: 17  KNKMPWYIIEYAEMKTALSPATLYAYITEYEKFLKWLVNNRLAVDNGKVVTDICDVPITT 76

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +  L   E R+F    + + I  R++ R+ S +KS  KYL +            RN+ + 
Sbjct: 77  LETLPLNEARSFQRYLQGEGIETRAINRTFSALKSLFKYLAQNTENEHGENYISRNVMEK 136

Query: 123 NSLPRA---------------LNEKQALTLVDNVLLHTSHETKWID-----------ARN 156
             L +                 NEK  +  +  +        K I             R+
Sbjct: 137 IELHKEKVDAAARADDVANMIFNEKDDVAFLQFLANDYGEMLKDISPRKYSFFQRDKERD 196

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
            AI+ L+ G GLR+SE  SLT  +I   Q T+++  KG+K   +    S    + EY  +
Sbjct: 197 IAIISLILGTGLRVSEVASLTISSINFRQGTVKVTRKGNKRSSILATRSCLDDVQEYIKV 256

Query: 217 CPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQL--RRYLGLPLSTTAHTLRHSFATH 272
            P   N   N  L      +GK     V  R I++L  +         + H LRH++AT+
Sbjct: 257 RPSKYNCPENEDLLFVTNYKGKFTQLTV--RAIQKLIDKYTSAFDEKRSPHKLRHTYATN 314

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
                 DL  ++  LGH  +  T IYTN+N+K
Sbjct: 315 HYKENKDLVLLRDQLGHTSVEVTSIYTNINNK 346


>gi|168186351|ref|ZP_02620986.1| putative integrase/recombinase [Clostridium botulinum C str.
           Eklund]
 gi|169295760|gb|EDS77893.1| putative integrase/recombinase [Clostridium botulinum C str.
           Eklund]
          Length = 274

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 101/225 (44%), Gaps = 31/225 (13%)

Query: 83  IGDRSLK-----RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           I DR LK     R L  I  F K+     I  +   +    ++  N L   L+ K    L
Sbjct: 59  IYDRGLKIKTINRKLVSINQFFKF---NNIAVD---IRQEKVQMQNFLDDILSNKDVQAL 112

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           V+          K  D R   I+Y LY  G+R+SE L LT  +    + ++ I GKG K 
Sbjct: 113 VNATY-------KKDDLRARTIIYTLYYTGMRVSEMLQLTIYDTK--KQSITILGKGAKH 163

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R V  +P+  K I E Y      +N+ I+    LF G RG P+N       I++     G
Sbjct: 164 REV-FIPNKLKDIWEAY------MNVRIRKGTALFTGKRG-PINRKTVDSLIKEYAALAG 215

Query: 256 LPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           +  S   AH  RH +  +L   G D+ +I  I GH  ++TT+IYT
Sbjct: 216 VSKSKAHAHNFRHLYCKNLADKGIDISTIADIAGHQNINTTRIYT 260


>gi|303233777|ref|ZP_07320431.1| site-specific tyrosine recombinase XerC [Finegoldia magna BVS033A4]
 gi|302495211|gb|EFL54963.1| site-specific tyrosine recombinase XerC [Finegoldia magna BVS033A4]
          Length = 326

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 70/214 (32%), Positives = 105/214 (49%), Gaps = 16/214 (7%)

Query: 95  IKSFLKYL---KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           I++F KYL   +K  I   + +L+  + KK+   P  L   ++L L+  +L     E K 
Sbjct: 101 IRTFYKYLINIRKLDIINPAELLD--SPKKNIRQPVYLTLDESLDLLKVILREKDEEIK- 157

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
             AR+  I  L   CG+R+SE  S+   +I    +TLR+ GKG+K R V L      AI 
Sbjct: 158 --ARDYCITVLFLNCGMRLSELSSINIDHIK--TNTLRVIGKGNKERTVYLNDMCLDAID 213

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFA 270
            Y  + P   N      LF   +   ++    Q  I    +  G   S  + H LRH+ A
Sbjct: 214 NYLKIRPEIDND----ALFISKKRNRMSNRAIQYRIEHYLKIGGFDTSIYSVHKLRHTAA 269

Query: 271 THLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNS 303
           T +   G  D++ +Q ILGH  +STTQIYT+V++
Sbjct: 270 TLMYQYGNVDIKVLQEILGHESVSTTQIYTHVDN 303


>gi|190015178|ref|YP_001966799.1| integrase/recombinase [Bacillus cereus]
 gi|190015443|ref|YP_001967123.1| site-specific tyrosine recombinase XerS [Bacillus cereus]
 gi|218848308|ref|YP_002455193.1| integrase/recombinase, phage integrase family [Bacillus cereus
           AH820]
 gi|116584854|gb|ABK00969.1| integrase/recombinase [Bacillus cereus]
 gi|116585124|gb|ABK01233.1| integrase/recombinase [Bacillus cereus]
 gi|218540359|gb|ACK92755.1| integrase/recombinase, phage integrase family [Bacillus cereus
           AH820]
          Length = 361

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 136/332 (40%), Gaps = 45/332 (13%)

Query: 16  KERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL-----AFYTEEKIT------IQT 62
           K +  W  ++  E++  LS  TL +Y  +  +FL +L     A    + +T      I T
Sbjct: 17  KNKMPWYIIEYAEMKTALSPATLYAYITEYEKFLNWLVNNRLAVDNGKVVTDICDVPIAT 76

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +  L   E R+F    +   I  R++ R+ S +KS  KYL +            RN+ + 
Sbjct: 77  LETLPLNEARSFQRYLQGAGIETRAINRTFSALKSLFKYLAQNTENEHGENYISRNVMEK 136

Query: 123 NSLPRA---------------LNEKQALTLVDNVLLHTSHETKWID-----------ARN 156
             L +                 NEK  +  +  +        K I             R+
Sbjct: 137 IELHKEKVDAAARADDVANMIFNEKDDVAFLQFLANDYGEMLKDISPRKYSFFQRDKERD 196

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
            AI+ L+ G GLR+SE  SLT  +I   Q T+++  KG+K   +    S    + EY  +
Sbjct: 197 IAIISLILGTGLRVSEVASLTISSINFRQGTVKVTRKGNKRSSILATRSCLDDVQEYIKV 256

Query: 217 CPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQL--RRYLGLPLSTTAHTLRHSFATH 272
            P   N   N  L      +GK     V  R I++L  +         + H LRH++AT+
Sbjct: 257 RPLKYNCPENEDLLFVTNYKGKFTQLTV--RAIQKLIDKYTSAFDEKRSPHKLRHTYATN 314

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
                 DL  ++  LGH  +  T IYTN+N+K
Sbjct: 315 HYKENKDLVLLRDQLGHTSVEVTSIYTNINNK 346


>gi|325980818|ref|YP_004293221.1| integrase family protein [Nitrosomonas sp. AL212]
 gi|325533323|gb|ADZ28042.1| integrase family protein [Nitrosomonas sp. AL212]
          Length = 316

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 125/293 (42%), Gaps = 33/293 (11%)

Query: 21  WLQNL-EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           W  NL  +E      T ++YE   + F+ F      E+      R ++   I A+     
Sbjct: 29  WFANLGNVE------TRRAYENALKDFMNFTGIQNPEEF-----RVVTRAHIIAWRDDLM 77

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN--LKKSNSLPRALNEKQALTL 137
            + +   S++  L+ + S  +YL ++   T + +  ++   ++       A+ + QA  L
Sbjct: 78  NRSLSSMSIRHRLAALSSLFEYLCEKNTVTHNPVKGVKRPAVESYEGKTPAIGDHQARKL 137

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ---STLRIQGKG 194
           +D         +     R+ AIL  L    LR  E   L  ++   ++     ++I GKG
Sbjct: 138 LD-----APDGSSLKGKRDRAILATLLYHALRRDELCRLKVKDFKQERRGVPHMKISGKG 192

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-------KPLNPGVFQRYI 247
            K R VPL P+    I +Y D    +  L     LFR           KP+ P    + +
Sbjct: 193 GKTRYVPLHPAASGLIHDYLDAA--EHGLEDTGALFRSTSNNRDKESQKPITPDGVYKLV 250

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           ++    LG  +   AH+LR + AT+ L +  D+  +Q  LGH  ++TT+IY +
Sbjct: 251 QKYSEKLGFKIG--AHSLRATAATNALDHQADIAKVQEWLGHANIATTRIYDH 301


>gi|256423767|ref|YP_003124420.1| integrase family protein [Chitinophaga pinensis DSM 2588]
 gi|256038675|gb|ACU62219.1| integrase family protein [Chitinophaga pinensis DSM 2588]
          Length = 284

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 76/157 (48%), Gaps = 4/157 (2%)

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVR 207
           T  I  R   +L+L Y CGLR SEA  L  +++      L ++ GKG   R++PL   V 
Sbjct: 124 TAAISMREKVMLHLFYSCGLRRSEAEMLNVRDVQVRHRLLYVRSGKGASRRVIPLTGKVA 183

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
             +  Y  L  +  +  ++   F   R G+ ++   + R ++ L    GL    + H LR
Sbjct: 184 GELGVY--LEEYRKSGAVEKGAFMLNREGRRMSGSSYNRLLKGLVGRAGLWQGISLHYLR 241

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           HS ATHLL  G  L  ++  LGH  L  TQIY  V +
Sbjct: 242 HSIATHLLQGGMSLEYVRDFLGHRHLEATQIYAKVGA 278


>gi|62768242|gb|AAY00030.1| putative integrase/recombinase [uncultured bacterial symbiont of
           Discodermia dissoluta]
          Length = 339

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 136/318 (42%), Gaps = 37/318 (11%)

Query: 6   LPEIVSFELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           +PE     L +  Q +  Q+L + RG S+ T+ +Y    +  L FL  + +         
Sbjct: 1   MPEAGPNSLGRALQAFFGQHLPLVRGASRHTVLAYRDGFKLLLRFLEQHLQRPSAALDFP 60

Query: 65  QLSYTEIRAFISKRRTQK---IGDRSLKRSLSGIKSFLKYLKKRK---ITTESNILNM-- 116
            L    + AF+    TQ+   I  R+ +  L+ + SF +Y   R    +     IL +  
Sbjct: 61  DLEPDNLLAFLDHAETQRGNTIATRNAR--LTAVHSFARYAATRHPEHLALCQRILAIPF 118

Query: 117 -RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
            R  ++S     A +E QAL    +    +         R+ A+L  +Y  G R+ E L 
Sbjct: 119 KRGPERSIEYLEA-DEAQALLAAPDCGTPSGR-------RDRALLLAMYNTGARVQEILD 170

Query: 176 LTPQNIMDD---QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
           L P ++  +   Q+ LR  GKG K RI PL+     A+     L    + L+ + PLFR 
Sbjct: 171 LRPCDLQLERPFQALLR--GKGRKERICPLMKETAVALRAL--LAERGVPLDSEQPLFRN 226

Query: 233 IRGKPLN-PGVFQRYIRQLRRYLGLPLSTT-------AHTLRHSFATHLLSNGGDLRSIQ 284
             G PL+  GV  RYI           + T        H +RH+ A+H L  G D+ +I 
Sbjct: 227 RHGAPLHRSGV--RYILHKHCCQAATHAPTLKRKRIHPHVMRHTMASHHLQAGVDIVTIS 284

Query: 285 SILGHFRLSTTQIYTNVN 302
            +LGH  + T   Y  VN
Sbjct: 285 HLLGHASVETANRYAVVN 302


>gi|170757708|ref|YP_001782133.1| phage integrase [Clostridium botulinum B1 str. Okra]
 gi|169122920|gb|ACA46756.1| phage integrase [Clostridium botulinum B1 str. Okra]
          Length = 331

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 127/279 (45%), Gaps = 31/279 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GLS  TL++Y+ +     IF  +  +   TI T+      ++R F+  R  + +   S+ 
Sbjct: 70  GLSLETLKNYQYN---LAIFADYLRKPLATINTM------DLRMFLGAR-CKNMKPSSMN 119

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             +S +KSF  +L+  +   ++    ++  K+   + + L E++A       LL  + ET
Sbjct: 120 GQISILKSFFGWLEAEEYIPKNPAAKLKQTKEPKRVRKPLTEEEA------ELLRQACET 173

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
                R  A+   L   G R+ E   +   NI   + +L + GKGDK R V    +  K 
Sbjct: 174 D----RQKALTEFLISTGCRLDEVFKVNKDNINWHEMSLFVVGKGDKERKV-YFNTKAKI 228

Query: 210 ILEYYDLCPFD----LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           +L+ Y     D    L +  + P  R      L     QR  +++    G+  S   H  
Sbjct: 229 LLKKYLFSREDDDPALFVTSKRPYHR------LGKRSIQREFKKIANMAGIEKSIHPHLF 282

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           RHSFAT+ +++G  +  IQ ++GH   +TTQIY  ++ +
Sbjct: 283 RHSFATYKINSGMPMPIIQHLMGHESPATTQIYAQLSEE 321


>gi|229521999|ref|ZP_04411416.1| site-specific recombinase XerD [Vibrio cholerae TM 11079-80]
 gi|229340924|gb|EEO05929.1| site-specific recombinase XerD [Vibrio cholerae TM 11079-80]
          Length = 348

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 115/256 (44%), Gaps = 32/256 (12%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S K +++ I+ F  +L KR+I   +   ++   +    LPR +  K A       LL   
Sbjct: 81  SRKVAVAAIRGFYSFLAKRRIVARNPAADLVYPRMGRRLPRFMGLKSA-----EALLFQP 135

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM------DDQSTLRIQGKGDKIRIV 200
           + T     R+SA+L LL GCG R++    L    ++       ++  +R   KG++ R+V
Sbjct: 136 NLTSLSGVRDSAMLALLIGCGFRVAGLCGLNESQLIWYQYGEVERLAIRTLEKGERERLV 195

Query: 201 PLLPSVR---KAILEYYDLCPFDLNL-NIQLPLFRGIRGKP------------LNPGVFQ 244
           P+        +A L ++DL   D  L N    LF  +R +             L+     
Sbjct: 196 PVPLEAMLLVQAYLGHHDLKHVDRVLDNGDQVLFVNLRNRHVPEWEHRGELRRLSTRAVD 255

Query: 245 RYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           R I++     G+P   + AH LRH F T L  +      IQ+++GH    T++IY++++ 
Sbjct: 256 RMIKKYAIAAGVPEDQSHAHALRHLFGTELAESDSSTLQIQALMGHADPKTSEIYSHISM 315

Query: 304 KNGGDWMMEIYDQTHP 319
           +     M  + D+ +P
Sbjct: 316 RK----MTHVLDKGNP 327


>gi|154148966|ref|YP_001406688.1| phage integrase family site specific recombinase [Campylobacter
           hominis ATCC BAA-381]
 gi|153804975|gb|ABS51982.1| site-specific recombinase, phage integrase family [Campylobacter
           hominis ATCC BAA-381]
          Length = 352

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 9/154 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAILE 212
           RN   + ++   G+R+ EA++L  ++I ++     LRI+GKG+K R+V     ++K ++E
Sbjct: 190 RNMLAVKIIIYTGIRVGEAINLKFKDISEENGIYILRIRGKGNKYRVVM----IKKHLIE 245

Query: 213 YYDLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFA 270
            + +    +N LN    L    +GKPL      R + ++    G+      AH LRH+FA
Sbjct: 246 KH-IEALSINYLNEDGYLLVNAKGKPLTQAYISRIVEKILISAGIRKEKNGAHMLRHTFA 304

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           T L     DL  +Q  LGH  L T++IYT+ +S+
Sbjct: 305 TMLYKKQKDLVLVQEALGHASLDTSRIYTHFDSQ 338


>gi|241992607|gb|ACS73659.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 127/304 (41%), Gaps = 58/304 (19%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +  L  F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWLWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YTNV 301
           YT+V
Sbjct: 312 YTHV 315


>gi|257486889|ref|ZP_05640930.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331013460|gb|EGH93516.1| Phage integrase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 319

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 126/291 (43%), Gaps = 33/291 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W  N++  R     T ++Y+ D + F  F+     ++      R ++   + A+ ++   
Sbjct: 32  WFANIDNPR-----TRRAYQIDLQDFCSFVGLAGADEF-----RAVTRAHVLAWRAQLEQ 81

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   +++R L+ + S   +L +       N ++     + +S     NE +   L D+
Sbjct: 82  RGLAGATIRRKLAALASLFDHLLENNAVAGGNPVHGVKRPRIDS-----NEGKTPALADH 136

Query: 141 ---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGD 195
               LL           R+ A+L +L   GLR  EA  L   ++ + +    LR+QGKG 
Sbjct: 137 QAKALLDAPPAESLKGLRDRAVLAVLLYHGLRREEAAQLQTSDLQERRGIKHLRVQGKGG 196

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQLRR 252
           K+R +PL P   + I  Y      + N+        LFR +RG+    G+    I ++  
Sbjct: 197 KLRWLPLHPVAAERIYAY-----IEQNMERGAGYGSLFRSLRGRSSGTGLSADGIYKIVC 251

Query: 253 YLGLPLST-----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +  +           H LR + AT+ L +  D+  +Q  LGH  +STT++Y
Sbjct: 252 HWAISAGIKVEGLGVHGLRATAATNALEHDADIAKVQIWLGHANISTTRLY 302


>gi|255535345|ref|YP_003095716.1| probable integrase [Flavobacteriaceae bacterium 3519-10]
 gi|255341541|gb|ACU07654.1| probable integrase [Flavobacteriaceae bacterium 3519-10]
          Length = 295

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 109/244 (44%), Gaps = 49/244 (20%)

Query: 95  IKSFLKYLKKRKITT-----ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           +K +L  L++R  T      +  +  +R L K+  LP +     A+  V  + +  S E 
Sbjct: 20  VKDYLFELQQRSKTPSQTYFKHTVYGLRFLLKTEGLPYSFLHLPAIPQVKKLPVILSREE 79

Query: 150 KWIDARNSAILY------LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL 202
            W   +++ +L       L+YGCGLR  E  ++  Q++  D+  L + QGKG K R VPL
Sbjct: 80  IWRMLQSAELLKHKLLIGLIYGCGLRCMEVRNIELQHLDFDRKMLHVVQGKGPKDRYVPL 139

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGK---------PLNPGV-------- 242
              + + +  +         +NI+ P   LF G + +         PL  G         
Sbjct: 140 SEHLIRGLRTF---------INIENPNQYLFNGNQNRNIEEIDASTPLRTGASPFASKDF 190

Query: 243 --------FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
                    Q  I+ + +  G+      HTLRHS+ATHLL +G  +  +Q +LGH R+ +
Sbjct: 191 DSRYSQRGVQWVIKTISKKAGITKEVHTHTLRHSYATHLLEDGVSIIMVQKLLGHERIES 250

Query: 295 TQIY 298
           T  Y
Sbjct: 251 TMEY 254


>gi|220935866|ref|YP_002514765.1| integron integrase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997176|gb|ACL73778.1| integron integrase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 323

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 129/281 (45%), Gaps = 56/281 (19%)

Query: 66  LSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSN 123
           +   ++ AF++    Q+ +   +  ++L+GI     +L +  +  E   L+ +   KK  
Sbjct: 49  MGAPQVEAFLTHLAVQEDVAPSTQNQALAGIL----FLYRDVLGIELPWLDGVTRAKKPP 104

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            LP  LN  +   L+             +D     +  L+YG GLR+ EAL L  +++  
Sbjct: 105 RLPVVLNRDEVRALLAQ-----------LDGMYWLLASLMYGSGLRLMEALRLRVKDVDL 153

Query: 184 DQSTLRI-QGKGDKIR-------IVPLLPSVRKAILEYYDLCPFDLNLN-IQLP------ 228
           ++  + + +GKG K R       +V  L   R+ +   + L   D NL  + LP      
Sbjct: 154 ERREVTVREGKGGKDRRTMLPGTLVEPLTRQREKVAAIHALD-RDNNLAAVYLPHALSRK 212

Query: 229 ------------LF----------RGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
                       LF           GIR +  L+    QR I+   R  G+    ++HTL
Sbjct: 213 YPNAGKELAWQFLFPASQPGIDPRSGIRRRHHLHESAVQRAIKGAVRAAGILKPASSHTL 272

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           RHSFATHLL +G D+R++Q +LGH  + TTQIYT+V ++ G
Sbjct: 273 RHSFATHLLEDGYDIRTVQELLGHSDVRTTQIYTHVLNRGG 313


>gi|108861476|gb|ABG21674.1| class 2 integrase [Providencia stuartii]
 gi|108861489|gb|ABG21686.1| class 2 integrase [Providencia stuartii]
          Length = 325

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 87/188 (46%), Gaps = 39/188 (20%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR--IVPL-LPSVR 207
           +D RN  I  LLYG GLRI+E L L  ++   D   + +  GKG K R  ++P  L S  
Sbjct: 118 MDTRNQVIFALLYGAGLRINECLRLRVKDFDFDNGCITVHDGKGGKSRNSLLPTRLISAI 177

Query: 208 KAILEYYDLCPFDLNL---NIQLPLFRGIRGKP--------------------------- 237
           K ++E   L   D NL      LP F   R  P                           
Sbjct: 178 KQLIEQARLIQQDDNLQGVGPSLP-FALDRKYPSAYRQAAWMFVFPSSTLCNHPYNGKLC 236

Query: 238 ---LNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
              L+  V ++ ++   +  G+     T HT RHSFATHLL  G D+R++Q +LGH  + 
Sbjct: 237 RHHLHDSVARKALKAAVQKAGIVSKRVTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVK 296

Query: 294 TTQIYTNV 301
           TTQIYT+V
Sbjct: 297 TTQIYTHV 304


>gi|313676056|ref|YP_004054052.1| integrase family protein [Marivirga tractuosa DSM 4126]
 gi|312942754|gb|ADR21944.1| integrase family protein [Marivirga tractuosa DSM 4126]
          Length = 286

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 111/235 (47%), Gaps = 35/235 (14%)

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           SKR+T    D     ++ G++   +  ++R    ES ++ + ++++  +LP  L++++  
Sbjct: 60  SKRKTPS--DSFFMHTVYGLRYLYRIFEQR----ESRVI-LPSIERQKALPVVLSQQEV- 111

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKG 194
                              ++  ++ LLYGCGLR  E  +L   ++  ++  L +Q GKG
Sbjct: 112 ---------RLLLKTPKLLKHRLMMALLYGCGLRNFELCNLKIVHLDLERKQLHVQQGKG 162

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV--------FQRY 246
            K R VPL   + + +  Y         L  + P      G+P   G          Q  
Sbjct: 163 RKDRYVPLCDLLVRGVNTY---------LQAEKPTEYLFNGQPDEDGGHTQLSTRGVQWV 213

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +RQ R+  G+    TAHTLRHS+ATHLL  G D+ +++ +LGH  + TT  Y +V
Sbjct: 214 MRQARQQSGIKKQITAHTLRHSYATHLLEMGTDIMTLKDLLGHGDIQTTLGYLHV 268


>gi|41023639|emb|CAF18331.1| integrase/recombinase IntI1 [Morganella morganii subsp. morganii]
          Length = 320

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 140/338 (41%), Gaps = 62/338 (18%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYLH----YSSRTEQAYVNWVRAFIRFHG--------VRHPAT 55

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           L  +E+ AF+S    ++    S  R    + + L +  K   T    +  +   + S  L
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQ--ALAALLFFYGKVLCTDLPWLQEIGRPRPSRRL 113

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P  L   + + ++            +++  +     LLYG G+RISE L L  +++  D 
Sbjct: 114 PVVLTPDEVVRILG-----------FLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFDH 162

Query: 186 STLRI-QGKGDKIR--IVP--LLPSVR--------------------------------K 208
            T+ + +GKG K R  ++P  L PS+R                                +
Sbjct: 163 GTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPR 222

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           A   +     F  + +   P    +R   +    FQR  ++     G+    T HTLRHS
Sbjct: 223 AGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHS 282

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           FAT LL +G D+R++Q +LGH  +STT IYT+V    G
Sbjct: 283 FATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKVGG 320


>gi|120406878|ref|YP_956707.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119959696|gb|ABM16701.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 395

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 131/296 (44%), Gaps = 31/296 (10%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL + + WL +   ERGL+++T+  YE   R+FL          +T          E+ A
Sbjct: 108 LLADYRGWLID---ERGLAQMTVIRYENLARRFLTLYPLDAGVAVT--------GAEVVA 156

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNE 131
           F+ +  +Q++   S K  ++ ++S L++L  R +T    +  +      +   +P+AL  
Sbjct: 157 FLLQE-SQRVSVGSAKGRVAELRSLLRFLFVRGLTPRLLTTAVPPVAGWRDTGIPKALPA 215

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI- 190
                L+D+        +  +  R+ AIL ++   GLR  E   +   +I  D  T RI 
Sbjct: 216 GHVQQLLDH-----CDRSDPVQVRDYAILMMVARLGLRSIEVARMQLDDI--DWRTGRII 268

Query: 191 -QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRG--KPLNPGVFQRY 246
             GK  +   +PL   V  A+ +Y      D+    QL  +F   +   + + P +    
Sbjct: 269 LHGKASRKDGMPLPEEVGAALADYLT----DIRPRTQLRAVFVSCKAPRRAIRPDLVSDV 324

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            R+     GLP    AH LRH+ AT +L  G  L  I  +L H  L+TT +Y  V+
Sbjct: 325 TRRACDRAGLP-RVGAHRLRHTLATEMLQRGVKLADIGQVLRHRDLATTALYAKVD 379


>gi|311030547|ref|ZP_07708637.1| hypothetical protein Bm3-1_08391 [Bacillus sp. m3-13]
          Length = 280

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 124/275 (45%), Gaps = 22/275 (8%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G S LTL++Y     Q+ + L ++ + ++ I T  QL    I+       +  +   SL 
Sbjct: 18  GYSPLTLKTY---CFQYNMLLRYFGDIELNILTTDQLKEYLIKG------STHLKPSSLG 68

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             +  I+S  K+        ++    ++  K    +P+ L E +   L ++         
Sbjct: 69  HRVRCIRSLFKWANDEGFIKKNPAAKLKEPKLGKRIPKFLTELEIEHLRESCQ------- 121

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              ++  +A+    Y  G RI E + L   +I    +++ + GKGDK R V         
Sbjct: 122 ---NSMENALFEFFYSTGCRIGEVVKLNRDDINFASNSVIVHGKGDKEREVYFNTRCSLW 178

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +  Y D    D + ++ +   R  R   ++  + +  I+++    G+  +   H LRHS+
Sbjct: 179 LKRYLDERD-DQDQSLFITERRPKRRMSID--LIRYIIKRISSGAGIKKNIHPHQLRHSY 235

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           ATH+++NG  L  IQS+LGH +  TT+IY  ++ K
Sbjct: 236 ATHMINNGAPLEVIQSLLGHEKSETTRIYAQLSGK 270


>gi|257469328|ref|ZP_05633422.1| integrase family protein [Fusobacterium ulcerans ATCC 49185]
          Length = 294

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 133/300 (44%), Gaps = 15/300 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L K  +++L   E     S  T++S + D  Q    L+ Y +    I+   +++   +R 
Sbjct: 4   LDKNIKDFLYYAEFGENKSLNTIKSLKKDLSQ----LSEYLKNIEKIEEASKITPVMLRG 59

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           FI   +  ++G RS+ R LS ++SF KYL K      +N++    ++  NS      +  
Sbjct: 60  FIIALQKNEVGKRSINRKLSSLRSFFKYLMK------NNLIKNNPIEIINSPSFEAEKPD 113

Query: 134 ALTLVD-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
            LTL + N L    +       R+  IL LLY  G+  +E LS+  Q    D  TL +  
Sbjct: 114 ILTLEEINKLRDVINTDNANGLRDRLILELLYSSGITSTEMLSIGEQVFDLDSRTLLVSN 173

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            G   R V      R+    Y +     +    N  + LF    G  L+    +R + + 
Sbjct: 174 -GKANRYVFFSQRTREYFKRYVEAKKEKYGDKYNSSI-LFVNGSGSRLSDRSLRRIVDRY 231

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+    + ++ RH+FA HLL+ G  L  +Q ++GH  + +T+IY  +  K   D+M
Sbjct: 232 AARAGITREISPYSFRHTFAVHLLTKGMSLNFLQELMGHVTIESTKIYQEILYKIPFDFM 291


>gi|269104474|ref|ZP_06157170.1| integrase/recombinase [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268161114|gb|EEZ39611.1| integrase/recombinase [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 468

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           L  +  + L+ +++ K I  R++AI +L+Y  GLR +E ++L+  +I  ++ T+ + GKG
Sbjct: 286 LDKISAICLNQTNKIKGI--RDNAIFWLMYESGLRRAEVVNLSLDDIDINRGTIHVVGKG 343

Query: 195 DKIRIVP--LLPSVRKAILEYYDLCPFDLNLNIQLPLF------RGIRGKPLNPGVFQRY 246
           +K R VP  L   + +A+ +++D+  + L  NI   LF      + +  K L        
Sbjct: 344 NKERYVPFSLESDLYRALSKWFDV-RYKLQGNIFNSLFCVVNKHQQVVEKSLTTQSLNDL 402

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            +Q++R +G     + H  RHS AT+LL  G DL  +   +GH  ++TTQ Y
Sbjct: 403 CKQIQR-MGFERMVSPHDFRHSVATNLLRAGHDLLLVSKFMGHSSVTTTQRY 453


>gi|160875353|ref|YP_001554669.1| integrase family protein [Shewanella baltica OS195]
 gi|160860875|gb|ABX49409.1| integrase family protein [Shewanella baltica OS195]
 gi|315267553|gb|ADT94406.1| integrase family protein [Shewanella baltica OS678]
          Length = 296

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 81/155 (52%), Gaps = 14/155 (9%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAIL 211
           R       LY  GLR+ EA+SL   +I  D   +++     KG K R+VPL P      L
Sbjct: 125 RYQVCFLTLYSMGLRLGEAISLQVGDI--DAGLMQVHIRDAKGGKDRLVPL-PQRTLLAL 181

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKP---LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            YY    +  + +    LF G   +P   ++ G  Q+ ++Q+     +  + + H+LRHS
Sbjct: 182 RYY----WRTHRHPHW-LFPGKDNQPDSLMDRGGLQKAMKQVILECNIHKAISPHSLRHS 236

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +ATHLL  G DLRS+Q++LGH  L+TT  YT +  
Sbjct: 237 YATHLLEQGLDLRSVQTLLGHHSLNTTARYTRLTD 271


>gi|257091622|ref|YP_003165265.1| hypothetical protein CAP2UW1_4693 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048631|gb|ACV37818.1| hypothetical protein CAP2UW1_4693 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 337

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 137/298 (45%), Gaps = 29/298 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI----TIQTIRQLSYTEIRAFIS 76
           ++++L  +R LS  T+ +Y      F++FL F  E ++     + T+  ++   I AF+ 
Sbjct: 19  FVEHLTQQRALSPQTVAAYR---DAFVLFLGF-AEVRLGRSPALITLADITPDLITAFLD 74

Query: 77  K-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
              R +    RS    L+ ++SFLK+   R +T+      ++ ++ +  +P    E+  L
Sbjct: 75  HLERKRHNSVRSRNGRLAALRSFLKFAAHRDVTS------LQVIEHALGVPAKRFERPML 128

Query: 136 TLV---DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRI 190
             +   + + +  + +  W   R+  ++ LLY  G R+SE + +    ++  D  + + +
Sbjct: 129 GYLSREEMLAVIGTPDGTWFSQRDHVLVLLLYNTGARVSEIVGVKVGEVVLDDGAACVHL 188

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIR- 248
            GKG K R VPL  S  +AI  +    P     +   PL     G+ ++   V QR  R 
Sbjct: 189 HGKGRKQRSVPLWRSTIRAIRAWIKRNP---QFDSDSPLLHNRDGQAMSRWNVMQRLDRA 245

Query: 249 -QLRRYLGLPLST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            Q+       L+T   + H +RH+ A HLL  G D+  I   LGH   +TT  Y   +
Sbjct: 246 VQVATESCPELATRHISPHVIRHTTAMHLLQAGVDISVIALWLGHESPATTHQYVEAD 303


>gi|218707888|ref|YP_002415407.1| Integrase/recombinase (E2 protein) [Escherichia coli UMN026]
 gi|293404547|ref|ZP_06648540.1| integron integrase IntI1 [Escherichia coli FVEC1412]
 gi|218434985|emb|CAR15926.1| Integrase/recombinase (E2 protein) [Escherichia coli UMN026]
 gi|291428259|gb|EFF01285.1| integron integrase IntI1 [Escherichia coli FVEC1412]
          Length = 337

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 127/310 (40%), Gaps = 58/310 (18%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWLWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YTNVNSKNGG 307
           YT+V    G 
Sbjct: 312 YTHVLKVGGA 321


>gi|89894917|ref|YP_518404.1| hypothetical protein DSY2171 [Desulfitobacterium hafniense Y51]
 gi|89334365|dbj|BAE83960.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 290

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 125/275 (45%), Gaps = 32/275 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GLS LTL+ Y  + R F   +    +E         ++  ++R ++ + +  ++   S+ 
Sbjct: 28  GLSDLTLKGYGIELRIFAEHVHKAADE---------ITTADLRLYLGEFKGLRLS--SIS 76

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             LS +KSF  +L    I  +     ++  KK   +P+AL+ ++   L +          
Sbjct: 77  GKLSVLKSFFSWLAAEDILLKDPSRKIKPPKKEKRIPKALSIEELEMLREAC-------- 128

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV----PLLPS 205
             I  R  A++ ++Y  G R+SE   +   ++     +  + GKG+K R V      +  
Sbjct: 129 --ITPRERALIEVMYATGCRLSEVQKMNRDDVDYQTMSASVIGKGNKERTVYFSYKAMYH 186

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           ++K ++   D     L +  + P  R      L+    QR ++ +     +  +   H L
Sbjct: 187 LKKYLMRRADEAEA-LFITERRPYRR------LSARGIQREVKLIADRSEVRKNVHPHVL 239

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           RH+FAT +L+NG D+ S+Q++LGH    TTQIY  
Sbjct: 240 RHTFATLMLNNGADIASVQALLGHEDPGTTQIYAQ 274


>gi|153821954|ref|ZP_01974621.1| DNA integrase IntI1 [Vibrio cholerae B33]
 gi|126520493|gb|EAZ77716.1| DNA integrase IntI1 [Vibrio cholerae B33]
          Length = 311

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 127/310 (40%), Gaps = 58/310 (18%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 7   TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 56

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 57  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 105

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 106 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 165

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 166 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 225

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 226 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 285

Query: 298 YTNVNSKNGG 307
           YT+V    G 
Sbjct: 286 YTHVLKVGGA 295


>gi|317063575|ref|ZP_07928060.1| integrase/recombinase [Fusobacterium ulcerans ATCC 49185]
 gi|313689251|gb|EFS26086.1| integrase/recombinase [Fusobacterium ulcerans ATCC 49185]
          Length = 298

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 133/300 (44%), Gaps = 15/300 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L K  +++L   E     S  T++S + D  Q    L+ Y +    I+   +++   +R 
Sbjct: 8   LDKNIKDFLYYAEFGENKSLNTIKSLKKDLSQ----LSEYLKNIEKIEEASKITPVMLRG 63

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           FI   +  ++G RS+ R LS ++SF KYL K      +N++    ++  NS      +  
Sbjct: 64  FIIALQKNEVGKRSINRKLSSLRSFFKYLMK------NNLIKNNPIEIINSPSFEAEKPD 117

Query: 134 ALTLVD-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
            LTL + N L    +       R+  IL LLY  G+  +E LS+  Q    D  TL +  
Sbjct: 118 ILTLEEINKLRDVINTDNANGLRDRLILELLYSSGITSTEMLSIGEQVFDLDSRTLLVSN 177

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            G   R V      R+    Y +     +    N  + LF    G  L+    +R + + 
Sbjct: 178 -GKANRYVFFSQRTREYFKRYVEAKKEKYGDKYNSSI-LFVNGSGSRLSDRSLRRIVDRY 235

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+    + ++ RH+FA HLL+ G  L  +Q ++GH  + +T+IY  +  K   D+M
Sbjct: 236 AARAGITREISPYSFRHTFAVHLLTKGMSLNFLQELMGHVTIESTKIYQEILYKIPFDFM 295


>gi|254168548|ref|ZP_04875392.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|197622603|gb|EDY35174.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
          Length = 305

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 75/153 (49%), Gaps = 13/153 (8%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQ---GKGDKIRIVPLLPSV 206
           +D RN  IL LL+  GLR++E ++L  +++  D  Q    +    GKG K R VP+ P V
Sbjct: 116 VDLRNRTILALLFATGLRVNEVINLDWKDLYYDNVQGVWMLHVRMGKGRKPRKVPVPPKV 175

Query: 207 RKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            K + E+  + P  D N     P      G  ++   F++ ++      G+P    AH  
Sbjct: 176 IKMLFEWRKIQPKTDPNAIFTTP------GGRISHAYFRKIVKVAAERAGIPW-FHAHLA 228

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           RH  A   L  G +L +I+  LGH  L TTQIY
Sbjct: 229 RHWRAIKFLEEGVNLETIRRYLGHSSLKTTQIY 261


>gi|228911789|ref|ZP_04075557.1| Integrase [Bacillus thuringiensis IBL 200]
 gi|228847849|gb|EEM92735.1| Integrase [Bacillus thuringiensis IBL 200]
          Length = 362

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 136/332 (40%), Gaps = 45/332 (13%)

Query: 16  KERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL-----AFYTEEKIT------IQT 62
           K +  W  ++  E++  LS  TL +Y  +  +FL +L     A    E +T      I T
Sbjct: 17  KSKMPWYIIEYAEMKTALSPATLYAYITEFEKFLKWLISNRLAVENGEVVTNICDVPITT 76

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +  L   E R F    + + I  R++ R+ S +KS  KYL +     +      RN+ + 
Sbjct: 77  LENLPLNEARTFQRYLQGEGIETRAINRTFSALKSLFKYLAQNTENEQGENYISRNVMEK 136

Query: 123 NSLPRA---------------LNEKQALTLVDNVLLHTSHETKWID-----------ARN 156
             L +                 NEK  +  +  +        K I             R+
Sbjct: 137 IELHKEKVDAAARADDVANMIFNEKDDVAFLQFLANDYGEMLKDISPKKYSYFQRDKERD 196

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
            AI+ L+ G GLR+SE  SLT  +I   Q  +R+  KG+K   V    S    + EY  +
Sbjct: 197 IAIISLILGTGLRVSEVASLTISSINFRQGKVRVTRKGNKRSSVLATRSCLDDVQEYIKV 256

Query: 217 CPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQL--RRYLGLPLSTTAHTLRHSFATH 272
            P   N   +  L      +GK     V  R I++L  +         + H LRH++AT+
Sbjct: 257 RPSKYNCPQDEDLLFVTNYKGKYTQLTV--RAIQKLCDKYSSAFDEKRSPHKLRHTYATN 314

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
                 DL  ++  LGH  +  T IYTN+N++
Sbjct: 315 HYKENKDLVLLRDQLGHTSVEVTSIYTNINNE 346


>gi|229145530|ref|ZP_04273914.1| Integrase/recombinase [Bacillus cereus BDRD-ST24]
 gi|228637983|gb|EEK94429.1| Integrase/recombinase [Bacillus cereus BDRD-ST24]
          Length = 326

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 103/206 (50%), Gaps = 10/206 (4%)

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
           K+F K+L + K    + I +++ LK        L  KQ  TL+  V   T     W   R
Sbjct: 109 KTFFKFLFENKHIPINPIKDIKKLKARAKEVEVLTPKQLKTLLSKVDRKT-----WNGIR 163

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY 214
           + AIL +L   GLR +E L+L+  +++ +Q  L ++  K    R VP+  + + A L+ +
Sbjct: 164 DYAILLVLIETGLRQNEILNLSVLDVVWEQDLLLVKHTKTYHQRKVPITDNTKNA-LKRW 222

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
            L   ++       LF GI GK L     ++ I +  +   +    + H  RH+FA+  L
Sbjct: 223 LLIRGEVYTK---RLFCGISGKALTNSGLRQMIYKYAKLANIQSRCSPHIFRHTFASIYL 279

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTN 300
            NGGDL S+Q I+GH  ++ T+ YT+
Sbjct: 280 RNGGDLFSLQQIMGHSDITMTRRYTH 305


>gi|162448726|ref|YP_001611093.1| integrase/recombinase [Sorangium cellulosum 'So ce 56']
 gi|161159308|emb|CAN90613.1| Integrase/recombinase [Sorangium cellulosum 'So ce 56']
          Length = 316

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 121/280 (43%), Gaps = 52/280 (18%)

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE-SNILNMRNLKKS 122
           RQ+   E+ AF++      +  R+   + +     L +L +R +  +   +  +   ++ 
Sbjct: 41  RQMGAEEVTAFLND---LAVARRTAASTQNQALCALLFLYRRVLDLQIPRLEALERARRP 97

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI- 181
             LP  L+ + ALTL+++++                I  LLYG GLR+ EALS+  +++ 
Sbjct: 98  EHLPTVLSRQDALTLLEHLI-----------PPFRLIGELLYGSGLRLLEALSIRVKDVD 146

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP-------------FDL--NLNIQ 226
           +D +  +  +GKG   R   L    R  +    D                 DL   L  +
Sbjct: 147 LDRRQIMVRRGKGQHDRPALLPARARDELQAQLDAVAQRHKKELAVGRGEVDLPHALRAK 206

Query: 227 LP----------LFRGIR-------GKP----LNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           +P          +F   R       G+     L+    QR +    R  GL    T H L
Sbjct: 207 MPGAATSLAWQYIFPASRPCTDPATGRQVLYHLHESAVQRAVHDAGRAAGLTKRATCHIL 266

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           RHSFATHLL  G D+R+IQ++LGH  + TT IYT++  + 
Sbjct: 267 RHSFATHLLEAGTDIRTIQTLLGHKDVRTTMIYTHIVDRG 306


>gi|12642602|gb|AAK00304.1|AF314189_1 integrase IntI8 [uncultured bacterium BAL3]
          Length = 316

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 78/178 (43%), Gaps = 39/178 (21%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS------------VRK 208
           LLYG G+R+ E L L  +++      + I+ GKG+K RI  +LP              R+
Sbjct: 140 LLYGTGMRLMECLRLRVKDVDFGYGQILIRDGKGEKDRIT-MLPERLVGPLKDQMDRARR 198

Query: 209 -----------------AILEYYDLCPFDLNLNIQLPLFRG--------IRGKPLNPGVF 243
                            A+   Y    F+ N     P            IR   L+  V 
Sbjct: 199 IHDTDLREGFGEVHLPYALARKYPRAGFEWNWRYVFPSRNRSADPDDGVIRRHHLDESVL 258

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           QR +R   R  G+      HT RHSFATHLL  G D R++Q +LGH  +STT IYT+V
Sbjct: 259 QRAVRTASRVAGISKPVHCHTFRHSFATHLLQAGYDTRTVQELLGHSDVSTTMIYTHV 316


>gi|116625845|ref|YP_828001.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229007|gb|ABJ87716.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 363

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 132/303 (43%), Gaps = 32/303 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS- 76
           R  +  +L   RG S  T+ SY       L FLA    + IT   +  L    I AF+S 
Sbjct: 14  RDYFTDHLPRLRGTSPHTIHSYRDSMVLLLRFLARQRNKPITGLDLTDLDPPGILAFLSH 73

Query: 77  --KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
             K R   +  R+++  LS I  F  ++  R      N  ++   ++   +P     ++A
Sbjct: 74  LEKERKNCVSTRNVR--LSAIHVFFHFVASR------NPEHLELAQRVLGIPFKRARQRA 125

Query: 135 LTLVD----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLR 189
           +  ++    + +L     T    +R+ A+L  ++  G R+ E   L   ++ +     +R
Sbjct: 126 MDYLEYDEIDAILKAIDRTTPQGSRDYALLATMFNTGGRVQEIADLRACDLQLTKPFQVR 185

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIR 248
           + GKG K R  PL P     +  + D    DL    ++  F   RG+PL   G+  RYI 
Sbjct: 186 LFGKGRKERYCPLWPQTAAVLRAFSDQRTLDLRSESRV--FLNHRGRPLTRFGI--RYI- 240

Query: 249 QLRRYLGLPLSTTA---------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            L + LGL  +            H++RHS A  LL +G DL SI  +LGH   +TT  Y 
Sbjct: 241 -LAKCLGLACADVPNLRTKRLHPHSVRHSTAVALLKSGVDLSSISHLLGHASPTTTNRYA 299

Query: 300 NVN 302
            V+
Sbjct: 300 KVD 302


>gi|77562727|gb|ABB00017.1| class 1 integrase [Pseudomonas aeruginosa]
          Length = 323

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 127/310 (40%), Gaps = 58/310 (18%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YTNVNSKNGG 307
           YT+V    G 
Sbjct: 312 YTHVLKVGGA 321


>gi|237721112|ref|ZP_04551593.1| phage integrase [Bacteroides sp. 2_2_4]
 gi|229449947|gb|EEO55738.1| phage integrase [Bacteroides sp. 2_2_4]
          Length = 327

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 124/278 (44%), Gaps = 29/278 (10%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GL + +L  Y    R F++ +  + +E +T          ++R +++ ++  K  D +L 
Sbjct: 55  GLCQSSLDYYRVILRAFILHVGKHIKEIVT---------DDVRVYLAYKKINKCSDNTLN 105

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
                + SF  +  +  +   + +L ++ +++   L + L+E       D   L +   T
Sbjct: 106 NIRRTLSSFFTWCTEEGVLDRNPMLRIKGVRQVKKLKKPLSED------DMERLRSLART 159

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           K    RN AI+  L+  G R+SE +++   ++      + + GKG K R V L    + A
Sbjct: 160 K----RNKAIIEFLFSTGCRVSEMVNVNLGDVDWQNGQIDVLGKGRKYRTVYLSARCKIA 215

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGI--RGKPLN------PGVFQRYIRQLRRYLGLPLSTT 261
           + EY D    DL   + L  + G+  + K +N       G  +  +R L +  G+  +  
Sbjct: 216 LQEYVDSRTDDLEA-LFLSDYEGMCQQIKDMNKLSRISKGAVEIMLRNLGKKAGIS-NVH 273

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            H LR + AT  L  G  +  +Q +LGH  + TT IY 
Sbjct: 274 PHRLRRTAATTALKRGMPIEQVQKMLGHESIETTTIYA 311


>gi|330016038|ref|ZP_08308377.1| site-specific recombinase, phage integrase family [Klebsiella sp.
           MS 92-3]
 gi|328529758|gb|EGF56652.1| site-specific recombinase, phage integrase family [Klebsiella sp.
           MS 92-3]
          Length = 327

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 102/239 (42%), Gaps = 35/239 (14%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSN 123
           Q++   I  + + RR+Q I   ++ R L+ I   F   ++    + E  I   + LK+  
Sbjct: 100 QITKALISQYYAARRSQGIKASTINRDLNSISGMFTALIEAELFSGEHPIRGRKKLKEEV 159

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
                L E +    + ++L         +D  N  I  L    G R  EA  L  ++I+ 
Sbjct: 160 PETGYLTEDE----IKHLLFK-------LDGDNKKIAILCLSTGARWGEAARLKAEHIIQ 208

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           ++ T  ++ K +K R VP+   V K I +                   G RG       +
Sbjct: 209 NRVTF-VKTKSNKQRTVPVSAEVAKLIAD-------------------GKRGLLFGKASY 248

Query: 244 QRYIRQLRRYL--GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             + RQ+ R +   LP     H LRHSFATH + NGG + ++Q ILGH R+  T  Y +
Sbjct: 249 SDF-RQILREVKPDLPTGQATHALRHSFATHFMINGGSIITLQRILGHARIEQTMAYAH 306


>gi|1197009|gb|AAA88676.1| unknown protein [Escherichia coli]
          Length = 337

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 129/310 (41%), Gaps = 58/310 (18%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVRKA 209
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R+ 
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREH 191

Query: 210 I-----------------------LE---------YYDLCPFDLNLNIQLPLFRGIRGKP 237
           +                       LE         +     F  + +   P    +R   
Sbjct: 192 VSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YTNVNSKNGG 307
           YT+V    G 
Sbjct: 312 YTHVLKVGGA 321


>gi|291612849|ref|YP_003523006.1| integron integrase [Sideroxydans lithotrophicus ES-1]
 gi|291582961|gb|ADE10619.1| integron integrase [Sideroxydans lithotrophicus ES-1]
          Length = 330

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 102/224 (45%), Gaps = 48/224 (21%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           KK   LP  LN ++      +++L     T  + AR      LLYG G+R+ E   L  +
Sbjct: 107 KKPQRLPSVLNREEV-----SLVLERMEGTYGLMAR------LLYGTGMRLMECCRLRVK 155

Query: 180 NIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY----DLCPFDLN---LNIQLP--L 229
           +I   Q  + I+ GKG K R+  L  ++ K + EY      L   DL+     + LP  L
Sbjct: 156 DIDFRQREILIRDGKGAKDRVTMLPETLIKPLQEYLLKRRRLFEDDLSKGMTEVYLPDAL 215

Query: 230 FRGI---------------------------RGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            R                             R   ++  + QR +++     G+    T 
Sbjct: 216 ARKYPNAAQEWIWQYVFPSGSYSVDPRSGRERRHHIDEKLLQRAMKKAVTASGITKFATP 275

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           HTLRHSFATHLL  G D+R++Q +LGH  +STT IYT+V +K G
Sbjct: 276 HTLRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYTHVLNKGG 319


>gi|260778906|ref|ZP_05887798.1| integron integrase IntI2 [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605070|gb|EEX31365.1| integron integrase IntI2 [Vibrio coralliilyticus ATCC BAA-450]
          Length = 321

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 132/313 (42%), Gaps = 67/313 (21%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSL 88
           G S  T +SY    R ++    FY E++  +Q    +   E+  F+S    ++ +   + 
Sbjct: 19  GYSIRTEKSYLYWIRSYI----FYHEKRHPMQ----MGSEEVIQFLSYLANSRNVAINTQ 70

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           K +L+     L YL +  +  E   L  R+  K   LP  +   +    V  VL H    
Sbjct: 71  KVALNA----LVYLYQAFLKIELGELGFRHATKQRQLPVVITPNE----VKQVLSH---- 118

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIR------- 198
              ++ +   I+ LLYG GLRISE L L  Q+I  D S L I    GKG K R       
Sbjct: 119 ---LNGKEKLIVELLYGSGLRISECLRLRVQDI--DLSNLSITVRDGKGKKDRQTLLSKQ 173

Query: 199 ---IVPLL-----------------PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
              ++ LL                 PS+  AI + Y      L      P    I     
Sbjct: 174 CVDVLKLLIEQAEQVQIADNKHGIGPSLPYAIHKKYPNAFRKLAWMFIFP-SPSISHSQY 232

Query: 239 N---PGVFQRYIRQLRRYLGLPLS-------TTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           N   P     +   +R+ L   ++        T HT RHSFATHLL  G D+RS+Q +LG
Sbjct: 233 NSDHPSRHHLHSSVIRKALSRAVAKTTINKKVTCHTFRHSFATHLLQAGRDIRSVQELLG 292

Query: 289 HFRLSTTQIYTNV 301
           H  + TTQIYT+V
Sbjct: 293 HNDVKTTQIYTHV 305


>gi|229193382|ref|ZP_04320331.1| Site-specific recombinase, phage integrase [Bacillus cereus ATCC
           10876]
 gi|228590096|gb|EEK47966.1| Site-specific recombinase, phage integrase [Bacillus cereus ATCC
           10876]
          Length = 327

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 119/259 (45%), Gaps = 9/259 (3%)

Query: 49  FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT 108
           F  ++T+E + +  +R+++   I  +I     + +   ++   LSG+KS  + L+K +  
Sbjct: 58  FYRYFTKE-VEVTDLRKMNADHIGLYIDSLLEKGLSPVTVNIRLSGLKSLFRRLEKHEYI 116

Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
            E+  +N   L+   S     N  Q        L      T +   R+   + L+  CG+
Sbjct: 117 KENPAVNFSKLRTDESKIYTFNNSQI-----KRLFRVVDTTSYAGFRDYVAMLLMLHCGM 171

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
           R++E  +L   +I  D   + + G  +K R    +P  ++ + E   L    ++   ++ 
Sbjct: 172 RVNEVAALEINDIDFDNGVILLAGAKNKNRRSRSIPMSKRIMGEIKQLITESMDYFEEVK 231

Query: 229 -LFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
            +F    G+ L+  + ++ +    R  GL      + H+LRH+FA + L +GG + ++  
Sbjct: 232 HVFLTQDGRRLDNDIIRKRMYTYGRLSGLYRECRVSPHSLRHTFACNYLRDGGSVNALMH 291

Query: 286 ILGHFRLSTTQIYTNVNSK 304
           ILGH  +++T  Y  + S+
Sbjct: 292 ILGHKDIASTMRYVRMTSE 310


>gi|16263337|ref|NP_436130.1| integrase/recombinase [Sinorhizobium meliloti 1021]
 gi|16263633|ref|NP_436426.1| Integrase/recombinase [Sinorhizobium meliloti 1021]
 gi|14524018|gb|AAK65542.1| integrase/recombinase [Sinorhizobium meliloti 1021]
 gi|14524343|gb|AAK65838.1| Integrase/recombinase [Sinorhizobium meliloti 1021]
          Length = 329

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 131/310 (42%), Gaps = 28/310 (9%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQ 81
           ++L  ER  S  T  +Y    +  + F A    ++  +  I  +    I AF+     T+
Sbjct: 14  EHLPRERRASVHTCDAYAYSFQLLVTFAARRLSKRPCLLQIEDIDVPMILAFLEHIEETR 73

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPRALNEKQALTLV 138
               RS    L+ +KSF +YL+ R        L +  +   K   +L  +L+  +     
Sbjct: 74  GNKARSRNARLAAVKSFFRYLEHRVPAVLDQALRVHAMPMKKIDEALVASLSRTEV---- 129

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDK 196
              LL+          R+ A+L+L +  GLR+SE + LT  +  D +S  ++ I GKG +
Sbjct: 130 -QALLNAPDRRSLSGIRDRAMLHLAFAGGLRVSELVGLT-LDQFDGRSPASIHIIGKGRR 187

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R++PL      AI  +  + P     N    LF    G+ +    F+ YI +      +
Sbjct: 188 ERVLPLWQETAAAIRAWIAVRP----KNGDTALFLNNAGRMMTRSGFE-YILEKHAAAAV 242

Query: 257 PLSTT-------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            ++ T        H LRHS A H+L    D+R +   LGH  L +T+IY   +       
Sbjct: 243 SVAPTLATKSISPHVLRHSCAMHMLQATRDIRKVALWLGHASLQSTEIYLRADPTEK--- 299

Query: 310 MMEIYDQTHP 319
            +E+ D   P
Sbjct: 300 -LEMLDALAP 308


>gi|255535352|ref|YP_003095723.1| probable integrase [Flavobacteriaceae bacterium 3519-10]
 gi|255341548|gb|ACU07661.1| probable integrase [Flavobacteriaceae bacterium 3519-10]
          Length = 253

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 112/234 (47%), Gaps = 25/234 (10%)

Query: 95  IKSFLKYLKKRKITT-----ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           +K +L  L++R  T      +  +  +R L K+  LP +     A+  V  + +  S E 
Sbjct: 20  VKDYLFELQQRSKTPSQSYFKHTVYGLRFLLKTEGLPYSFLHLPAIPQVKKLPVILSREE 79

Query: 150 KWIDARNSAILY------LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL 202
            W   +++ +L       L+YGCGLR  E  ++  Q++  D+  L I QGKG K R VPL
Sbjct: 80  IWRMLQSAELLKHKLLIGLIYGCGLRCMEVRNIELQHLDFDRKMLHIVQGKGSKDRYVPL 139

Query: 203 LPSVRKAI-----LEYYDLCPFDLN-------LNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
              + + +     +E  +   F+ N       +++  P  +    +    GV Q  I+ +
Sbjct: 140 SEHLIRGLKTFISIENPNQYLFNGNQNRNIEDIDVLAPNRKDFDSRYSQRGV-QWVIKTI 198

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            +  G+      HTLRHS+ATHLL +G  +  +Q +LGH R+ +T  Y +  S+
Sbjct: 199 SKKAGITKEVHTHTLRHSYATHLLEDGVPIIMVQKLLGHERIESTMEYLHSLSR 252


>gi|126661477|ref|ZP_01732531.1| tyrosine recombinase xerC [Cyanothece sp. CCY0110]
 gi|126617235|gb|EAZ88050.1| tyrosine recombinase xerC [Cyanothece sp. CCY0110]
          Length = 285

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 74/146 (50%), Gaps = 7/146 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           R+  +L L+Y CGLRISEA  LT Q++    D     I GKG + R+V +   +   ++ 
Sbjct: 127 RDFLMLSLIYACGLRISEASRLTWQDLQPRKDGGQALIDGKGGQSRVVLIPVGLWAKLMA 186

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +  L     +      +F   R K L      + ++Q     G+   T+AH LRH+ ATH
Sbjct: 187 FQSLRSPHTD-----AVFYSRRQKELARSRIHQIVKQAALDAGINPKTSAHWLRHAHATH 241

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIY 298
            L NG D+  +Q  LGH  ++TTQ Y
Sbjct: 242 SLENGCDISLLQQSLGHSDITTTQRY 267


>gi|241992592|gb|ACS73649.1| IntI1 [uncultured bacterium]
          Length = 337

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 127/310 (40%), Gaps = 58/310 (18%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALEREYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YTNVNSKNGG 307
           YT+V    G 
Sbjct: 312 YTHVLKVGGA 321


>gi|226949603|ref|YP_002804694.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
 gi|226843121|gb|ACO85787.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
          Length = 331

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 143/307 (46%), Gaps = 33/307 (10%)

Query: 4   NNLPE---IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           N LPE   +V+ ++ ++ Q +L + +++ GLS  TL++Y  +    +IF  +  +    I
Sbjct: 42  NILPEETGLVTSDIEEKLQIYLASKKLD-GLSIETLKNYRYN---LIIFADYLRKPLAAI 97

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           +T+      ++R F+  R  + +   S+   +S +KSF  +L   +   ++    ++  K
Sbjct: 98  ETM------DLRMFLGAR-CKDMKQSSVNGQISILKSFFGWLADEEYIPKNPAKKLKQTK 150

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +   + + L E++A       LL  + ET     R  A+   L   G R+ E   +   +
Sbjct: 151 QPKRVRKPLTEEEA------ELLRQACETD----RQKALTEFLISTGCRLDEVFKVNKDD 200

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP--- 237
           I   + +L I GKGDK R V    +  K +L+ Y     D N     P       +P   
Sbjct: 201 INWHEMSLFIVGKGDKERKV-YFNTKAKILLKKYLFSREDDN-----PALFVTSKRPYHR 254

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L     QR  +++    G+  S   H  RHSFAT+ +++G  +  IQ ++GH   +TTQI
Sbjct: 255 LGKRSIQREFKKIANIAGIEKSIHPHLFRHSFATYKINSGMPMPIIQHLMGHESPATTQI 314

Query: 298 YTNVNSK 304
           Y  ++ +
Sbjct: 315 YAQLSEE 321


>gi|332662500|ref|YP_004445288.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100]
 gi|332331314|gb|AEE48415.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 355

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 114/248 (45%), Gaps = 26/248 (10%)

Query: 61  QTIRQLSYTEIRA-FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           + + +L  + +R+ F+      K+ + +L   ++ +K + + + KR    E     +   
Sbjct: 118 KAVNELDSSRLRSYFLYCTNILKLSENTLHSRINAVKFYFEQVLKR----EKFFFEIPRP 173

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           KK + LP+ +N K    L + V  +  H T         +L L YG GLR+SE ++L   
Sbjct: 174 KKPSILPKVINAKDIKKLFE-VTTNLKHNT---------MLKLCYGMGLRVSEIVNLKIT 223

Query: 180 NIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
           +I  D   L++   + KG K R   L  S+ + +  Y+      +    +  LF G  G 
Sbjct: 224 DI--DSKNLQVFIERAKGKKDRYANLPESILEQLRAYF------VEYKPKKYLFEGQYGD 275

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
             +    Q+      +   +  +   H LRHSFATHLL  G D+  IQ +LGH  L TT 
Sbjct: 276 QYSVRSAQKVFADALKKAKINKNVGIHGLRHSFATHLLEAGTDISFIQELLGHNDLKTTL 335

Query: 297 IYTNVNSK 304
            YT+V+ +
Sbjct: 336 RYTHVSQQ 343


>gi|148455782|gb|ABQ65129.1| IntI1 [Pseudomonas aeruginosa]
          Length = 337

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 127/310 (40%), Gaps = 58/310 (18%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YTNVNSKNGG 307
           YT+V    G 
Sbjct: 312 YTHVLKVGGA 321


>gi|9507567|ref|NP_052898.1| integrase [Plasmid R100]
 gi|17530624|ref|NP_511222.1| integrase [IncN plasmid R46]
 gi|18466564|ref|NP_569372.1| putative integrase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|31795140|ref|NP_857998.1| DNA integrase [uncultured bacterium]
 gi|51492558|ref|YP_067855.1| integrase/recombinase [Aeromonas punctata]
 gi|55275332|ref|YP_133854.1| DNA integrase [uncultured bacterium]
 gi|58000325|ref|YP_190211.1| integrase [Escherichia coli]
 gi|60115569|ref|YP_209361.1| integrase [Salmonella enterica subsp. enterica serovar Choleraesuis
           str. SC-B67]
 gi|66968565|ref|YP_245442.1| IntI1 DNA integrase [Pseudomonas aeruginosa]
 gi|77993248|ref|YP_358838.1| integrase [IncP-1beta multiresistance plasmid pB8]
 gi|111038080|ref|YP_709167.1| IntI1 integrase [IncP-1 plasmid pKJK5]
 gi|133756458|ref|YP_001096414.1| Tn21 integrase [Escherichia coli]
 gi|134044876|ref|YP_001102252.1| integrase IntI1 for transposon Tn21 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|145301311|ref|YP_001144151.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|156144910|ref|YP_001427371.1| integrase [Pseudomonas aeruginosa]
 gi|160431700|ref|YP_001552088.1| integrase [Salmonella enterica subsp. enterica serovar Dublin]
 gi|165938049|ref|ZP_02226609.1| integrase/recombinase (E2 protein) [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|170650836|ref|YP_001740003.1| integrase/recombinase [Escherichia coli SMS-3-5]
 gi|187736864|ref|YP_001816602.1| IntI1 [Escherichia coli 1520]
 gi|190410293|ref|YP_001965796.1| intI1 [Klebsiella pneumoniae]
 gi|190570443|ref|YP_001966865.1| integrase [Aeromonas hydrophila]
 gi|190576895|ref|YP_001966227.1| IntI1 integrase [Klebsiella pneumoniae]
 gi|194430536|ref|ZP_03063005.1| integrase/recombinase [Escherichia coli B171]
 gi|194439843|ref|ZP_03071908.1| integrase/recombinase [Escherichia coli 101-1]
 gi|194733854|ref|YP_002112947.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|209901149|ref|YP_002286930.1| integrase/recombinase [Klebsiella pneumoniae]
 gi|215528097|ref|YP_002332850.1| integrase [Klebsiella pneumoniae]
 gi|226807711|ref|YP_002791406.1| IntI1 [Enterobacter cloacae]
 gi|226807858|ref|YP_002791507.1| IntI1 integrase [Enterobacter cloacae]
 gi|226810024|ref|YP_002791719.1| IntI1 [Enterobacter cloacae]
 gi|226810139|ref|YP_002791835.1| IntI1 integrase [Enterobacter cloacae]
 gi|256367791|ref|YP_003108348.1| integrase/recombinase [Escherichia coli]
 gi|284000137|ref|YP_003377824.1| integrase IntL [Escherichia coli O26:H-]
 gi|297622240|ref|YP_003675796.1| IntI1 [Klebsiella oxytoca KOX105]
 gi|300819973|ref|ZP_07100154.1| integron integrase [Escherichia coli MS 107-1]
 gi|300906153|ref|ZP_07123870.1| integron integrase [Escherichia coli MS 84-1]
 gi|300955292|ref|ZP_07167681.1| integron integrase [Escherichia coli MS 175-1]
 gi|301302513|ref|ZP_07208643.1| integron integrase [Escherichia coli MS 124-1]
 gi|301329501|ref|ZP_07222300.1| integron integrase [Escherichia coli MS 78-1]
 gi|305696852|ref|YP_003864166.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|310286416|ref|YP_003937677.1| integrase/recombinase [Escherichia coli]
 gi|313107841|ref|ZP_07794014.1| integrase/recombinase (E2 protein) [Pseudomonas aeruginosa 39016]
 gi|330011345|ref|ZP_08307041.1| integron integrase [Klebsiella sp. MS 92-3]
 gi|331680833|ref|ZP_08381473.1| integrase/recombinase (E2 protein) [Escherichia coli H299]
 gi|50402171|sp|P62590|INT2_ECOLX RecName: Full=Integrase/recombinase; AltName: Full=E2 protein
 gi|50402172|sp|P62591|INT2_PSEAE RecName: Full=Integrase/recombinase; AltName: Full=E2 protein
 gi|50402173|sp|P62592|INT2_SALTI RecName: Full=Integrase/recombinase; AltName: Full=E2 protein
 gi|2120150|pir||I39499 integrase - Acinetobacter baumannii
 gi|6752460|gb|AAF27722.1|AF156486_1 integrase INTI1 [Klebsiella pneumoniae]
 gi|7381448|gb|AAF61482.1|AF191564_1 integrase [Pseudomonas aeruginosa]
 gi|13940487|gb|AAK50385.1|AF313472_1 IntI1 integrase [Pseudomonas aeruginosa]
 gi|15384483|gb|AAK96393.1|AF313471_1 IntI1 integrase [Pseudomonas aeruginosa]
 gi|18958400|gb|AAL82587.1|AF355189_1 integrase IntI1 [Pseudomonas aeruginosa]
 gi|48206|emb|CAA31361.1| unnamed protein product [Escherichia coli]
 gi|151300|gb|AAA25857.1| integrase [Pseudomonas aeruginosa]
 gi|151817|gb|AAB59081.1| IntI1 integrase [Plasmid R46]
 gi|530814|gb|AAC44315.1| DNA integrase [Pseudomonas aeruginosa]
 gi|596251|gb|AAA56784.1| integrase [Acinetobacter baumannii]
 gi|3088617|gb|AAC14727.1| DNA integrase [Plasmid NR79]
 gi|3513661|gb|AAC33911.1| IntI1 DNA integrase [Escherichia coli]
 gi|5103166|dbj|BAA78802.1| integrase for In2 [Plasmid R100]
 gi|16357506|gb|AAK60185.2| integrase IntI1 [Escherichia coli]
 gi|16505880|emb|CAD09758.1| putative integrase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|17342661|gb|AAL13418.1| integrase [IncN plasmid R46]
 gi|21898667|gb|AAM77079.1| integrase [uncultured bacterium]
 gi|29329827|emb|CAD57181.1| integrase [Aeromonas salmonicida]
 gi|30349168|gb|AAP20904.1| integrase [Escherichia coli]
 gi|30349183|gb|AAP20918.1| integrase [Escherichia coli]
 gi|30350250|gb|AAP22972.1| IntI1 [Escherichia coli]
 gi|31746384|emb|CAD97509.1| DNA integrase [uncultured bacterium]
 gi|33086394|emb|CAD80250.1| integrase class1 [Pseudomonas aeruginosa]
 gi|34556020|emb|CAD57194.1| integrase [Aeromonas salmonicida]
 gi|40645553|dbj|BAD06398.1| DNA integrase [Klebsiella pneumoniae]
 gi|42391698|dbj|BAD08688.1| DNA integrase [Klebsiella pneumoniae]
 gi|42543943|dbj|BAD11025.1| DNA integrase [Klebsiella pneumoniae]
 gi|45502089|emb|CAF31510.1| IntI1 DNA integrase [Salmonella enterica]
 gi|45758127|gb|AAS76339.1| integrase [Salmonella enterica subsp. enterica serovar Choleraesuis
           str. SC-B67]
 gi|45925935|gb|AAS79108.1| integrase [Shigella flexneri 2a]
 gi|45934117|gb|AAS79142.1| integrase [Pseudomonas aeruginosa]
 gi|46559086|emb|CAE52510.2| DNA integrase [Pseudomonas aeruginosa]
 gi|47716827|gb|AAT37602.1| integrase [Escherichia coli]
 gi|48526060|gb|AAT45232.1| integrase [Salmonella enterica subsp. enterica serovar
           Choleraesuis]
 gi|51470601|emb|CAG15092.1| integrase/recombinase [Aeromonas caviae]
 gi|54300645|gb|AAV32837.1| integrase [Pseudomonas aeruginosa]
 gi|54887450|emb|CAG34228.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|54887458|emb|CAG34236.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|54969638|emb|CAG27804.1| DNA integrase [uncultured bacterium]
 gi|66259843|gb|AAY43107.1| integrase [Enterobacter cloacae]
 gi|66862647|emb|CAI46945.1| IntI1 DNA integrase [Pseudomonas aeruginosa]
 gi|71361872|gb|AAZ30042.1| Integrase [Enterobacter cloacae]
 gi|72416446|emb|CAF31402.2| type I integrase [Pseudomonas aeruginosa]
 gi|77734001|emb|CAI10765.1| integrase [IncP-1beta multiresistance plasmid pB8]
 gi|81072647|gb|ABB55351.1| IntI1 integrase [Enterobacter cloacae]
 gi|87295510|gb|ABD37051.1| IntI1 [Escherichia coli]
 gi|88702681|gb|ABD49194.1| integrase [Achromobacter xylosoxidans]
 gi|88911246|gb|ABD58919.1| IntI1 [Pseudomonas aeruginosa]
 gi|89033269|gb|ABD59947.1| Tn21 integrase [Escherichia coli]
 gi|89211896|gb|ABD63310.1| IntI1 [Bordetella bronchiseptica]
 gi|89243390|gb|ABD64875.1| integrase [Aeromonas hydrophila]
 gi|89330180|emb|CAJ84004.1| integrase [Salmonella enterica subsp. enterica serovar Keurmassar]
 gi|92112119|gb|ABE73722.1| integrase [Acidovorax sp. MUL2G8]
 gi|92112131|gb|ABE73754.1| integrase [Burkholderiales bacterium MUL2G11]
 gi|110264479|gb|ABG56842.1| IntI1 integrase [Klebsiella pneumoniae]
 gi|110781085|emb|CAK02669.1| IntI1 integrase [IncP-1 plasmid pKJK5]
 gi|112553509|gb|ABI20478.1| integrase [uncultured bacterium]
 gi|114147178|gb|ABI50465.1| integrase [Klebsiella pneumoniae]
 gi|114147192|gb|ABI50478.1| IntI1 [Klebsiella pneumoniae]
 gi|116294895|gb|ABJ98410.1| IntI1 [Shigella flexneri 5]
 gi|118402696|emb|CAI94353.1| type I integrase [Pseudomonas aeruginosa]
 gi|118402704|emb|CAI94360.1| type I integrase [Pseudomonas aeruginosa]
 gi|118402713|emb|CAI94368.1| type I integrase [Pseudomonas aeruginosa]
 gi|118402722|emb|CAI94376.1| type I integrase [Pseudomonas aeruginosa]
 gi|119116290|emb|CAH10848.2| integrase-recombinase [Pseudomonas aeruginosa]
 gi|133905410|gb|ABO42172.1| integrase IntI1 for transposon Tn21 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|142856088|gb|ABO92403.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|145848971|emb|CAM91521.1| integrase intiI [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|146151087|gb|ABQ02853.1| intI1 [Klebsiella pneumoniae]
 gi|148455768|gb|ABQ65126.1| IntI1 [Pseudomonas aeruginosa]
 gi|156104633|emb|CAO91764.1| integrase [Pseudomonas aeruginosa]
 gi|159885569|dbj|BAF93171.1| integrase [Salmonella enterica subsp. enterica serovar Dublin]
 gi|165914072|gb|EDR32689.1| integrase/recombinase (E2 protein) [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165928622|gb|ABY74390.1| integrase [Klebsiella pneumoniae]
 gi|170293866|gb|ACB13001.1| IntI1 [Hydrogenophaga sp. PL2G6]
 gi|170522112|gb|ACB20289.1| integrase/recombinase [Escherichia coli SMS-3-5]
 gi|170785722|gb|ACB37786.1| IntI1 [Klebsiella pneumoniae]
 gi|172051446|emb|CAP07788.1| IntI1 [Escherichia coli]
 gi|182382566|gb|ACB87555.1| DNA integrase [Pseudomonas aeruginosa]
 gi|190683007|gb|ACE81789.1| IntI1 [Enterobacter cloacae]
 gi|192822646|gb|ACF06155.1| class 1 integrase [Klebsiella pneumoniae]
 gi|193409924|gb|ACF17979.1| IntI1 [Escherichia coli]
 gi|194326135|emb|CAQ64786.1| intergrase [Cloning vector pRG930cm]
 gi|194359398|gb|AAK59383.2| DNA integrase [Pseudomonas aeruginosa]
 gi|194411419|gb|EDX27772.1| integrase/recombinase [Escherichia coli B171]
 gi|194421233|gb|EDX37255.1| integrase/recombinase [Escherichia coli 101-1]
 gi|194709356|gb|ACF88579.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197359178|gb|ACH69795.1| class I integrase [Pseudomonas aeruginosa]
 gi|207581351|gb|ACI24747.1| integrase [Salmonella enterica subsp. enterica serovar Newport]
 gi|208436691|gb|ACI28900.1| IntI1 [Pseudomonas aeruginosa]
 gi|209574100|gb|ACI62988.1| integrase/recombinase [Klebsiella pneumoniae]
 gi|225730198|gb|ACO24910.1| integrase [Enterobacter aerogenes]
 gi|225730210|gb|ACO24921.1| integrase [Escherichia coli]
 gi|226425937|gb|ACO54030.1| IntI1 [Enterobacter cloacae]
 gi|226426085|gb|ACO54178.1| IntI1 integrase [Enterobacter cloacae]
 gi|226426251|gb|ACO54343.1| IntI1 [Enterobacter cloacae]
 gi|226426366|gb|ACO54458.1| IntI1 integrase [Enterobacter cloacae]
 gi|227809552|gb|ACP40994.1| DNA integrase intI1 [Shigella flexneri]
 gi|228480728|gb|ACQ42055.1| integrase/recombinase [Escherichia coli]
 gi|238773820|dbj|BAH66385.1| integrase [Pseudomonas aeruginosa]
 gi|247712942|gb|ACT09123.1| IntI1 [Pseudomonas aeruginosa]
 gi|253559511|gb|ACT32445.1| class I integrase [Xanthomonas oryzae pv. oryzae]
 gi|253559513|gb|ACT32446.1| class I integrase [Xanthomonas oryzae pv. oryzae]
 gi|254914163|gb|ACT83767.1| integrase IntI1 [Escherichia coli]
 gi|257043820|gb|ACV33237.1| DNA integrase [Enterobacter cloacae]
 gi|257043842|gb|ACV33257.1| DNA integrase [Pseudomonas aeruginosa]
 gi|257043850|gb|ACV33264.1| DNA integrase [Pseudomonas aeruginosa]
 gi|257123763|gb|ACV41753.1| IntI1 [Pseudomonas aeruginosa]
 gi|260677486|gb|ACX47970.1| integrase [Pseudomonas aeruginosa]
 gi|267850619|gb|ACY82390.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|281323234|gb|ADA60225.1| integrase/recombinase [Klebsiella oxytoca]
 gi|281600419|gb|ADA73403.1| Integrase/recombinase [Shigella flexneri 2002017]
 gi|283445077|gb|ADB20421.1| integrase IntI1 [Escherichia coli O26:H-]
 gi|284923819|emb|CBG36917.1| integrase [Escherichia coli 042]
 gi|289064109|gb|ADC80448.1| class 1 integron integrase IntI1 [Pseudomonas alcaligenes]
 gi|289064116|gb|ADC80454.1| class 1 integron integrase IntI1 [Pseudomonas oryzihabitans]
 gi|289064135|gb|ADC80472.1| class 1 integron integrase IntI1 [Comamonas testosteroni]
 gi|289065278|gb|ADC80781.1| IntI1 [Escherichia coli]
 gi|289065352|gb|ADC80852.1| IntI1 [Escherichia coli]
 gi|289551904|gb|ADD10607.1| IntI1 [Pseudomonas putida]
 gi|290964843|emb|CBH41111.1| class 1 integrase [Kluyvera georgiana]
 gi|295981465|emb|CBL87884.1| IntI1 integrase [Pseudomonas sp. Tik3]
 gi|296492059|gb|ADH29561.1| DNA integrase IntI1 [Klebsiella oxytoca KOX105]
 gi|299483209|gb|ADJ19347.1| IntI1 [Enterobacter cloacae]
 gi|300317797|gb|EFJ67581.1| integron integrase [Escherichia coli MS 175-1]
 gi|300402043|gb|EFJ85581.1| integron integrase [Escherichia coli MS 84-1]
 gi|300527473|gb|EFK48535.1| integron integrase [Escherichia coli MS 107-1]
 gi|300842038|gb|EFK69798.1| integron integrase [Escherichia coli MS 124-1]
 gi|300844364|gb|EFK72124.1| integron integrase [Escherichia coli MS 78-1]
 gi|302127772|emb|CBO78185.1| class 1 integrase [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|304376153|dbj|BAJ15315.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|308826745|emb|CBX36000.1| Integrase/recombinase [Escherichia coli]
 gi|310880516|gb|EFQ39110.1| integrase/recombinase (E2 protein) [Pseudomonas aeruginosa 39016]
 gi|312261322|gb|ADQ54342.1| integrase [Klebsiella pneumoniae]
 gi|315252947|gb|EFU32915.1| integron integrase [Escherichia coli MS 85-1]
 gi|315667013|gb|ADU55733.1| intI1 [Pseudomonas sp. 11BF10]
 gi|317109804|gb|ADU90743.1| Integrase/recombinase [uncultured bacterium]
 gi|321271381|gb|ADW79471.1| class 1 integron integrase IntI1 [Escherichia coli]
 gi|323903319|gb|ADY11083.1| IntI1 DNA integrase [Escherichia coli]
 gi|323959138|gb|EGB54804.1| integron integrase [Escherichia coli H489]
 gi|324020458|gb|EGB89677.1| integron integrase [Escherichia coli MS 117-3]
 gi|324110986|gb|EGC04975.1| integron integrase [Escherichia fergusonii B253]
 gi|325491815|gb|ADZ16819.1| class 1 integrase [Pseudomonas fluorescens]
 gi|325495829|gb|EGC93689.1| integrase [Escherichia fergusonii ECD227]
 gi|327536588|gb|AEA95421.1| integron integrase IntI1 [Salmonella enterica subsp. enterica
           serovar Dublin]
 gi|327536704|gb|AEA95536.1| integron integrase IntI1 [Salmonella enterica subsp. enterica
           serovar Dublin]
 gi|328534216|gb|EGF60841.1| integron integrase [Klebsiella sp. MS 92-3]
 gi|331081821|gb|EGI52979.1| integrase/recombinase (E2 protein) [Escherichia coli H299]
 gi|332751435|gb|EGJ81838.1| integron integrase family protein [Shigella flexneri 2747-71]
 gi|332752605|gb|EGJ82991.1| integron integrase family protein [Shigella flexneri 2747-71]
 gi|332758761|gb|EGJ89080.1| integron integrase family protein [Shigella flexneri 2747-71]
 gi|332765272|gb|EGJ95498.1| integron integrase family protein [Shigella flexneri K-671]
 gi|332765338|gb|EGJ95557.1| integron integrase family protein [Shigella flexneri K-671]
 gi|333005791|gb|EGK25309.1| integron integrase family protein [Shigella flexneri K-218]
 gi|333006038|gb|EGK25552.1| integron integrase family protein [Shigella flexneri VA-6]
 gi|333008515|gb|EGK27985.1| integron integrase family protein [Shigella flexneri K-272]
 gi|333011761|gb|EGK31167.1| integron integrase family protein [Shigella flexneri K-227]
 gi|333012763|gb|EGK32142.1| integron integrase family protein [Shigella flexneri K-304]
 gi|333020622|gb|EGK39882.1| integron integrase family protein [Shigella flexneri K-227]
          Length = 337

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 127/310 (40%), Gaps = 58/310 (18%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YTNVNSKNGG 307
           YT+V    G 
Sbjct: 312 YTHVLKVGGA 321


>gi|283479611|emb|CAY75527.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 344

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 122/254 (48%), Gaps = 18/254 (7%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLVD 139
           + +  R+ + +L  ++ + ++L K+ +   +   ++   +    LPR  L+ +Q   +V+
Sbjct: 98  EPLSPRTQRTALQPLQVWFRWLAKQNLILANPAADLELPRLEKHLPRTILSVEQVEDIVN 157

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR 198
              L+T         R+ A+L LL+  G+R  E   L   +    +  L I QGKG + R
Sbjct: 158 LCDLNTLQ-----GMRDRALLELLWSTGIRRGEVARLETWSADFSRKILTIVQGKGKQDR 212

Query: 199 IVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLF---RGIRGKPLNPGVFQRYIRQLRRYL 254
           ++P+       +  Y +++ P  + +     LF    G+ G   N G+    +  LR   
Sbjct: 213 VIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVAGLTAN-GITHAVVPYLR-AA 270

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+    +    RH+ AT +L NG DLR IQ++LGH  + +TQIYT V+ K     +  ++
Sbjct: 271 GIE-KGSCXLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIKA----LQAVH 325

Query: 315 DQTHPSITQKDKKN 328
             THP+  + D ++
Sbjct: 326 ASTHPAEREADSEH 339


>gi|238897940|ref|YP_002923620.1| integrase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229465698|gb|ACQ67472.1| integrase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 336

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 99/220 (45%), Gaps = 25/220 (11%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKK-------SNSLPRALNEKQALTLVDNVLLH 144
           L  IK   +  +  ++    N  +++N+K+          +      KQ  T +D     
Sbjct: 93  LCAIKGVAEEARASRLMDADNYHDVKNIKRIRGARISRGRMLECAEIKQLFTFLD----- 147

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
              +T     R++A++ L++GCGLR SE   L   +I  + + + I GKG+K RI  + P
Sbjct: 148 --IQTTGAAIRDAALISLMFGCGLRRSEVADLDIDHIDFENNKIDIHGKGNKERINYMPP 205

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIR------GKPLNPGVFQRYIRQLRRYLGLPL 258
              K +  + D    D +     PLF  IR         L        I+QL   L L  
Sbjct: 206 ETAKRMCLWVDSVRGDHS----GPLFTRIRKNDDVTSDRLTTNGIGFIIKQLVTKLSLK- 260

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           S T H LR S+A+ LL NG D+ +++  LGH  + TTQ Y
Sbjct: 261 SFTPHDLRRSYASLLLENGEDILTVKEALGHASVVTTQQY 300


>gi|155024|gb|AAA72104.1| integrase [Shigella sonnei]
          Length = 337

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 127/310 (40%), Gaps = 58/310 (18%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YTNVNSKNGG 307
           YT+V    G 
Sbjct: 312 YTHVLKVGGA 321


>gi|148243783|ref|YP_001220023.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|325113224|ref|YP_004277170.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|325113258|ref|YP_004277204.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|326402547|ref|YP_004282628.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|146400346|gb|ABQ28881.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|325049408|dbj|BAJ79746.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|325052691|dbj|BAJ83028.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|325052725|dbj|BAJ83062.1| phage integrase family protein [Acidiphilium multivorum AIU301]
          Length = 330

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 132/302 (43%), Gaps = 25/302 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQ-TIRQLSYTEIRAFISKRRTQKIGD-RSLK 89
           S+ T+  Y  DT + L+  A    +K  +  T+  +    +  F++   T +    RS  
Sbjct: 25  SRHTVAGYR-DTFRLLLRYASARRKKPPVNLTVEDIDADLVADFLAHTETARGNSARSRN 83

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT---- 145
             L+ I+SF +++    +T  + +L+ + +    ++P     K+A+T +D   +      
Sbjct: 84  TRLAAIRSFFRFVA---MTDPTWLLHCQRIL---AMPNKRYVKRAVTFLDAEEMAALLAA 137

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLP 204
              T W   R+ A+L L    GLR SE + LT  ++ +   + +R  GKG K R  PL  
Sbjct: 138 PDRTTWAGRRDHALLLLAVQTGLRASELVGLTRGDVVLGTGAHIRCMGKGRKERATPLRR 197

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ--LRRYLGLPL---- 258
              K +  +        + +   PLF  IRG+ L+    +  +R+  L      P     
Sbjct: 198 ETAKLLATW-----IGNDKDEGKPLFPSIRGERLSRDALEHLVRKHCLTASRACPSIGTK 252

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             T HTLRHS A  LL +G D   I   LGH  + TTQIY + + +     +  +     
Sbjct: 253 QVTPHTLRHSTAMDLLHHGVDPAVIALWLGHENVETTQIYIHADMRMKEKALARVAAPAT 312

Query: 319 PS 320
           PS
Sbjct: 313 PS 314


>gi|260462714|ref|ZP_05810920.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
 gi|259031620|gb|EEW32890.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
          Length = 280

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 81/153 (52%), Gaps = 2/153 (1%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEY 213
           ++ A L + YG GLR++E   L   ++  ++  LR++ GKG + R   L   + + + E+
Sbjct: 90  KHQAALSVAYGAGLRVAEVSMLKVTDLDSERMLLRVERGKGGRYRNAMLSEDLLRLLREW 149

Query: 214 YDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           + +      ++    LF G    KP++     R + +  +   +      HTLRHSFATH
Sbjct: 150 WKVGRQQGVMHRDGWLFPGQHAMKPISTRQLYRIVVEAAQAADIAKRVGPHTLRHSFATH 209

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           LL +G D+R IQ +LGH +L+ T +Y  V ++ 
Sbjct: 210 LLEDGTDIRIIQVLLGHAKLNNTALYAKVATRT 242


>gi|170293839|gb|ACB12975.1| IntI 1 [Aquabacterium sp. PL1F5]
 gi|170293900|gb|ACB13034.1| IntI1 [Imtechium sp. PL2H3]
          Length = 337

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 127/310 (40%), Gaps = 58/310 (18%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YTNVNSKNGG 307
           YT+V    G 
Sbjct: 312 YTHVLKVGGA 321


>gi|8118290|gb|AAF72980.1|AF255921_1 recombinase [Shigella flexneri]
 gi|152063|gb|AAA91585.1| recombinase [Plasmid RGN238]
          Length = 337

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 127/310 (40%), Gaps = 58/310 (18%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAQGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YTNVNSKNGG 307
           YT+V    G 
Sbjct: 312 YTHVLKVGGA 321


>gi|2668483|dbj|BAA23767.1| integrase [Pseudomonas aeruginosa]
          Length = 337

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 135/327 (41%), Gaps = 59/327 (18%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHCVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQK 324
           YT+V  K GG  +    D   P  +++
Sbjct: 312 YTHV-LKVGGAGVRSPLDALPPLTSER 337


>gi|117926143|ref|YP_866760.1| phage integrase family protein [Magnetococcus sp. MC-1]
 gi|117609899|gb|ABK45354.1| phage integrase family protein [Magnetococcus sp. MC-1]
          Length = 153

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/141 (35%), Positives = 70/141 (49%), Gaps = 7/141 (4%)

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           +Y CGLRI+E   L   +I   +  LRI GKG+K R++PL  S        Y L      
Sbjct: 1   MYACGLRINEVRPLEVSSIDGQKQLLRIIGKGNKERLIPLPTST------LYGLRSLWRE 54

Query: 223 LNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
                 LF    G   ++  V  R  +   R  GLP   T H LRHS+AT L+ N  DLR
Sbjct: 55  HRHPRFLFPNKGGTNAVHSCVLYRTFKDALREAGLPSEITPHVLRHSYATRLMENDVDLR 114

Query: 282 SIQSILGHFRLSTTQIYTNVN 302
           + Q ++GH  + +T IY+++ 
Sbjct: 115 TTQILMGHSSIKSTLIYSHLT 135


>gi|241992559|gb|ACS73625.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 126/304 (41%), Gaps = 58/304 (19%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YTNV 301
           YT+V
Sbjct: 312 YTHV 315


>gi|13488301|ref|NP_085852.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14028101|dbj|BAB54693.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 336

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 131/303 (43%), Gaps = 20/303 (6%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           SF +L +R  + ++L  +R +S  T+ +Y    R  L F   +  +      +  L    
Sbjct: 9   SFAVLLQRY-FTEHLTNQRAVSPRTIAAYRDTFRLLLRFAERHIGKAPANVELLDLDSEL 67

Query: 71  IRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           I AF+    R +  G RS    LS I+SFL Y     +T       +  ++++ ++P+  
Sbjct: 68  ILAFLDHLERERDNGPRSRNVRLSAIRSFLHYASHHDVTA------LPTIQRALAIPQKR 121

Query: 130 NEKQALTLVD----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDD 184
            +K  L  +       +L   ++ +W   R+ A    +Y  G R+SE + L   + ++D 
Sbjct: 122 YDKPLLEFLSREEMQAILDAPNQLEWTGRRDQAFFTTMYNTGGRVSELIGLRVSDVVLDG 181

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
            + + I GKG K R VPL  S    +  +              P   G+     N  V Q
Sbjct: 182 SACIHINGKGRKQRTVPLWRSSANLLRAWRREAGDVAGSAAFFPNRDGVAMTRSN--VTQ 239

Query: 245 R---YIRQL--RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           R   Y+++   ++   L  + + HT RHS A HLL +G D+  I   LGH   +TT  Y 
Sbjct: 240 RLALYVKKAAEKKPQLLAKTISPHTFRHSTAMHLLQSGVDISVIALWLGHESPTTTHNYL 299

Query: 300 NVN 302
             +
Sbjct: 300 QAD 302


>gi|213155654|ref|YP_002317699.1| IntI1 integrase [Acinetobacter baumannii AB0057]
 gi|301347157|ref|ZP_07227898.1| IntI1 integrase [Acinetobacter baumannii AB056]
 gi|213054814|gb|ACJ39716.1| IntI1 integrase [Acinetobacter baumannii AB0057]
          Length = 344

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 84/183 (45%), Gaps = 37/183 (20%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207
           LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R         
Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198

Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                                  +A   +     F  + +   P    +R   +    FQ
Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V   
Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKV 318

Query: 305 NGG 307
            G 
Sbjct: 319 GGA 321


>gi|120597821|ref|YP_962395.1| phage integrase family protein [Shewanella sp. W3-18-1]
 gi|120598661|ref|YP_963235.1| phage integrase family protein [Shewanella sp. W3-18-1]
 gi|120557914|gb|ABM23841.1| phage integrase family protein [Shewanella sp. W3-18-1]
 gi|120558754|gb|ABM24681.1| phage integrase family protein [Shewanella sp. W3-18-1]
          Length = 287

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 133/280 (47%), Gaps = 29/280 (10%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS-LKRS 91
           +++L+ Y   TR   ++ A    ++   Q +  ++  ++ A+      ++   R+ LK  
Sbjct: 11  EISLRGYSARTRNAYLY-AITQLQQYANQPLDNITDEQLTAYFRYLNLERHHSRATLKLQ 69

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L+GI  F +++ KR  T + ++      K+ + LP+ L+ +     +  +L H       
Sbjct: 70  LNGIHFFYEHVLKRDFTIQLSLP-----KRPHKLPQLLSCQD----IAALLYHCQ----- 115

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210
              +  A+L L YGCGLR+SE   +   +I   +  L++ QGKG   R V + P++   +
Sbjct: 116 -SLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGACDRWVIISPTLLTLL 174

Query: 211 LEYYDLC-PFDLNLNIQLPLFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            +Y+    P +        LF         PL+   F++ + +  R  G+    + H+LR
Sbjct: 175 RQYWQAYHPVEW-------LFASTYHDVVYPLHESTFRKALAKAARLAGITKPCSPHSLR 227

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           H++ATH L  G  L  +Q+ LGH  + +T+ Y + + + G
Sbjct: 228 HAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPELG 267


>gi|241992614|gb|ACS73664.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 126/304 (41%), Gaps = 58/304 (19%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHRVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YTNV 301
           YT+V
Sbjct: 312 YTHV 315


>gi|68262570|emb|CAJ13499.1| integrase/recombinase [Klebsiella pneumoniae]
          Length = 320

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 84/182 (46%), Gaps = 37/182 (20%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207
           LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R         
Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198

Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                                  +A   +     F  + +   P    +R   +    FQ
Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V   
Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKV 318

Query: 305 NG 306
            G
Sbjct: 319 GG 320


>gi|116623840|ref|YP_825996.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227002|gb|ABJ85711.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 297

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 89/194 (45%), Gaps = 26/194 (13%)

Query: 120 KKSNSLPRALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           K+   LP  L+  +   L+ +   LLH +            +L  LY  G+R +E   L 
Sbjct: 94  KRHRKLPEILSPDEVALLIGSASNLLHQT------------MLMTLYSTGVRRAELCRLK 141

Query: 178 PQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
             +I   +  + I QGKG   R VPL P + + +  Y+        +  +  LF G    
Sbjct: 142 SADIDSQRMMVHIRQGKGGHDRDVPLSPRLLETLRVYWRW------MKPKTYLFPGTVNN 195

Query: 237 -----PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
                P+   V     RQ  +  G+    + HTLRH FA+HLL  G DLR+IQ +LGH +
Sbjct: 196 WRADVPITTKVPWEACRQAAQRAGITKHVSPHTLRHCFASHLLEAGTDLRTIQMLLGHAK 255

Query: 292 LSTTQIYTNVNSKN 305
           L  T +Y +++ K+
Sbjct: 256 LEHTAMYLHLSRKH 269


>gi|332875882|ref|ZP_08443671.1| integron integrase [Acinetobacter baumannii 6014059]
 gi|332735920|gb|EGJ66958.1| integron integrase [Acinetobacter baumannii 6014059]
          Length = 318

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 127/310 (40%), Gaps = 58/310 (18%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 14  TEQAYVNWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 63

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 64  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 112

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 113 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 172

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 173 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 232

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 233 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 292

Query: 298 YTNVNSKNGG 307
           YT+V    G 
Sbjct: 293 YTHVLKVGGA 302


>gi|27383511|ref|NP_775042.1| class I integron integrase [Citrobacter freundii]
 gi|32455549|ref|NP_862305.1| DNA integrase IntI1 [Corynebacterium glutamicum]
 gi|133756208|ref|YP_001096358.1| hypothetical protein pLEW517_p33 [Escherichia coli]
 gi|169797581|ref|YP_001715374.1| integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE]
 gi|200388793|ref|ZP_03215405.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|226807703|ref|YP_002791398.1| IntI1 [Enterobacter cloacae]
 gi|226810014|ref|YP_002791708.1| IntI1 [Enterobacter cloacae]
 gi|297622202|ref|YP_003675754.1| IntIA [Klebsiella oxytoca KOX105]
 gi|301028321|ref|ZP_07191578.1| integron integrase [Escherichia coli MS 196-1]
 gi|317050213|ref|YP_004111329.1| integron integrase [Desulfurispirillum indicum S5]
 gi|5107035|gb|AAD39931.1|AF133699_1 integron In50 integrase [Pseudomonas aeruginosa]
 gi|9836716|gb|AAG00280.1|AF164956_12 DNA integrase IntI1 [Corynebacterium glutamicum]
 gi|10185692|gb|AAG14404.1|AF188331_3 putative integrase [Shigella flexneri]
 gi|12719023|gb|AAK02045.1|AF261825_14 integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|2385351|emb|CAA75043.1| int [Corynebacterium glutamicum]
 gi|3661459|gb|AAC64362.1| class I integrase [Pseudomonas aeruginosa]
 gi|4063851|gb|AAC98492.1| integrase [Salmonella typhimurium DT104]
 gi|5420398|emb|CAB46685.1| DNA integrase [Pseudomonas aeruginosa]
 gi|17383996|emb|CAC81318.1| IntI1 DNA integrase [Salmonella typhimurium]
 gi|17384003|emb|CAC81325.1| IntI1 DNA integrase [Salmonella typhimurium]
 gi|27261364|gb|AAN87705.1| class I integron integrase [Citrobacter freundii]
 gi|34556054|emb|CAE46709.1| DNA integrase [Pseudomonas aeruginosa]
 gi|34556062|emb|CAE46716.1| DNA integrase [Pseudomonas aeruginosa]
 gi|57208125|emb|CAI40605.1| class 1 integrase [Corynebacterium amycolatum]
 gi|66277417|gb|AAY44597.1| class 1 integron integrase [Enterobacter cloacae]
 gi|82653445|emb|CAG23925.2| type I integrase [Pseudomonas aeruginosa]
 gi|83627316|dbj|BAE54317.1| integrase [Escherichia coli]
 gi|85376217|gb|ABC70304.1| IntI1 [Pseudomonas aeruginosa]
 gi|85376219|gb|ABC70305.1| IntI1 [Pseudomonas aeruginosa]
 gi|90265346|emb|CAJ77028.1| Integrase [Acinetobacter baumannii]
 gi|110084043|gb|ABG49197.1| hypothetical protein [Escherichia coli]
 gi|118402688|emb|CAI94346.1| type I integrase [Pseudomonas aeruginosa]
 gi|118402758|emb|CAI43354.1| integrase/recombinase [Pseudomonas aeruginosa]
 gi|122891987|gb|ABM67075.1| IntI1 integrase [Aeromonas caviae]
 gi|148455793|gb|ABQ65133.1| IntI1 [Pseudomonas putida]
 gi|151564272|gb|ABS17587.1| integrase [Klebsiella pneumoniae]
 gi|166865480|gb|ABZ01842.1| IntI1 [Salmonella enterica subsp. enterica]
 gi|169150508|emb|CAM88414.1| Integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE]
 gi|187369485|dbj|BAG31351.1| class 1 integrase IntI1 [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|193783422|emb|CAE81269.2| IntI1 [Klebsiella pneumoniae]
 gi|199605891|gb|EDZ04436.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|226425929|gb|ACO54022.1| IntI1 [Enterobacter cloacae]
 gi|226426240|gb|ACO54332.1| IntI1 [Enterobacter cloacae]
 gi|253558898|gb|ACT32121.1| IntI1 [Pseudomonas putida]
 gi|255039694|gb|ACT99624.1| IntI1 [Pseudomonas aeruginosa]
 gi|265509433|gb|ACY75520.1| integrase [Pseudomonas aeruginosa]
 gi|265509448|gb|ACY75535.1| integrase [Pseudomonas aeruginosa]
 gi|296492021|gb|ADH29523.1| IntI1 [Klebsiella oxytoca KOX105]
 gi|297593574|gb|ADI47529.1| IntI1 integrase [Klebsiella pneumoniae]
 gi|298104544|gb|ADI55012.1| class I integron integrase [Aeromonas caviae]
 gi|299878615|gb|EFI86826.1| integron integrase [Escherichia coli MS 196-1]
 gi|312914891|dbj|BAJ38865.1| IntI1 [Salmonella enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|312915760|dbj|BAJ39733.1| IntI1 [Salmonella enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|316945297|gb|ADU64773.1| integron integrase [Desulfurispirillum indicum S5]
 gi|321159227|gb|ADW66520.1| DNA integrase [Enterobacter aerogenes]
 gi|321268198|gb|ADW78905.1| IntI [Escherichia coli]
 gi|332144420|dbj|BAK19640.1| class 1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|332144565|dbj|BAK19780.1| class 1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 337

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 127/310 (40%), Gaps = 58/310 (18%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YTNVNSKNGG 307
           YT+V    G 
Sbjct: 312 YTHVLKVGGA 321


>gi|42563728|gb|AAS20532.1| Int1 [Pseudomonas aeruginosa]
          Length = 337

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 127/310 (40%), Gaps = 58/310 (18%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YTNVNSKNGG 307
           YT+V    G 
Sbjct: 312 YTHVLKVGGA 321


>gi|255655227|ref|ZP_05400636.1| putative tyrosine recombinase [Clostridium difficile QCD-23m63]
 gi|296451212|ref|ZP_06892953.1| tyrosine recombinase XerD [Clostridium difficile NAP08]
 gi|296880435|ref|ZP_06904398.1| tyrosine recombinase XerD [Clostridium difficile NAP07]
 gi|296260033|gb|EFH06887.1| tyrosine recombinase XerD [Clostridium difficile NAP08]
 gi|296428676|gb|EFH14560.1| tyrosine recombinase XerD [Clostridium difficile NAP07]
          Length = 304

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 132/289 (45%), Gaps = 15/289 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE--IRAFIS 76
           + ++  ++ ++ LS+ T+ SY  D ++++        E I  ++I+ +   E  I +++ 
Sbjct: 5   EGYIDYIKDKKKLSENTVASYFMDIKKYM--------EYINQKSIKLIDIVENDIISYLI 56

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           K     +   ++ R +S IKSF  YL    I T +   +++  K        L E++   
Sbjct: 57  KLEKDNVSIATIARMISSIKSFHDYLFLNHICTNNPAKDIKKPKIKKENINILTEEEIER 116

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L++   L T    K I  R+ AI  +LYG G+++SE + +  ++I  D   +        
Sbjct: 117 LLNFPKLTTP---KLI--RDKAIFEVLYGTGIKVSELVEMNIEDIDLDIDYIYCNSCCKS 171

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R++PL    +  + +Y       + +  +  LF    G+        + I++      +
Sbjct: 172 QRVIPLCDITKLYLEKYLKEARPKMAVEGEKSLFVSSLGQRFTRQGLWKVIKKYSNLANI 231

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             +     LRHSFA HLL+ G ++  +  ILG+  LS+ Q+Y N   KN
Sbjct: 232 DKNINPTMLRHSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDKN 280


>gi|77454860|ref|YP_345728.1| putative transposase [Rhodococcus erythropolis PR4]
 gi|229492444|ref|ZP_04386248.1| putative transposase [Rhodococcus erythropolis SK121]
 gi|77019860|dbj|BAE46236.1| putative transposase [Rhodococcus erythropolis PR4]
 gi|229320673|gb|EEN86490.1| putative transposase [Rhodococcus erythropolis SK121]
          Length = 341

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 124/282 (43%), Gaps = 44/282 (15%)

Query: 65  QLSYTEIRAFISKRRTQK-------------IGDRSLKRSLSGIKSFLKYLKKRKI---- 107
           Q+S +++ AFI  +R  +             +   ++KR L+ I     YL +R +    
Sbjct: 59  QVSTSDVLAFIQAQRLPRKENVVRLSDGESGLATSTIKRRLASISGLFSYLHERGLVEKN 118

Query: 108 ------TTESNILNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
                 +T S   ++R    ++    LPR L+  +    V+ +L     E      R+ A
Sbjct: 119 PVPRGLSTRSGRSHVRGTPLIRAPRRLPRVLSPDE----VNALLAALRCE------RDRA 168

Query: 159 ILYLLYGCGLRISEALSL-TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           ++ L+   GLR  E L L  P     ++      GKG   RIVP+ P+  +++  Y D  
Sbjct: 169 MVLLMLFGGLRRCEVLGLRMPDVRPGERRVFVAAGKGGHQRIVPVAPTFFESLGRYLDAE 228

Query: 218 -PFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
            P D   + + + L R  RG PL+       +   R   GLP   T H LRH+  T L  
Sbjct: 229 RPIDSATDHVFVVLKRPRRGNPLSAAGLDEILSGARVRGGLP-HATCHELRHTCFTRLRE 287

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           +G  L +IQ+  GH  + +T+IY ++ +    DW++  Y + 
Sbjct: 288 SGMALEAIQAQAGHASIESTRIYLHLAN----DWLIGEYSKA 325


>gi|118511775|emb|CAD20932.2| IntI1 integrase [Salmonella enterica subsp. enterica serovar
           Infantis]
          Length = 337

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 135/327 (41%), Gaps = 59/327 (18%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVNWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQK 324
           YT+V  K GG  +    D   P  +++
Sbjct: 312 YTHV-LKVGGAGVSSPLDALPPLTSER 337


>gi|227461211|gb|ACP39550.1| putative integron integrase [uncultured microorganism]
          Length = 300

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 105/219 (47%), Gaps = 48/219 (21%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K S  LP  L +++   L+ +V              N  I+ +LYG G+RI E L L  +
Sbjct: 93  KVSKRLPSVLTQQETAALLAHV-----------SGTNGLIIRMLYGTGMRIKECLRLRIK 141

Query: 180 NIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYD--LCPFDLNL-----NIQLP--- 228
           +I   +  + I +GKG+K R   L  S+   ++++ D  L   +L+L     +++LP   
Sbjct: 142 DIDLARRIIVIREGKGNKDRTTMLPGSLADDLIQHIDERLRWHNLDLSTGHADVELPDAI 201

Query: 229 -----------LFRGIRGKPL---NP--GVFQRYI---RQLRRYLGLPLSTT-------A 262
                       ++ +   P    +P  G  +R+    R ++R + +             
Sbjct: 202 ARKYPRAASEWAWQYVFAAPTYSTDPRTGSVRRHHWCERNIQRAVKVAAQQARIHKLVHP 261

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           HTLRHSFATHLL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 262 HTLRHSFATHLLETGSDIRTVQELLGHSDVSTTMIYTHV 300


>gi|330880190|gb|EGH14339.1| Phage integrase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 271

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 119/264 (45%), Gaps = 23/264 (8%)

Query: 46  FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR 105
           F  F+   + ++      R ++ + + A+ +    + +   +++R L+ + S   +L   
Sbjct: 3   FCSFIGLASADEF-----RVVTRSHVLAWRAHLEHRGLAGATIRRKLAALASLFDHL--- 54

Query: 106 KITTESNILNMRNLKKSNSLPR-ALNEKQALTLVDN---VLLHTSHETKWIDARNSAILY 161
               E+N +   N       PR   NE +   L D+    LL    ET     R+ A+L 
Sbjct: 55  ---LENNAIAGGNPVHGVKRPRIESNEGKTPALGDHQAKALLEAPDETTLKGQRDRALLA 111

Query: 162 LLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           +L   GLR  EA  L   +I + +    L++ GKG K+R +PL P     I +Y +    
Sbjct: 112 VLLYHGLRREEAALLQVSDIQERRGIQHLKVHGKGGKVRYLPLHPIAAGRIHQYLENSEH 171

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL----RRYLGLPLSTTA-HTLRHSFATHLL 274
            L    ++PLF  +RGK    G+    I  +     +  G+ +     H LR + AT+ L
Sbjct: 172 HL-AERKVPLFMPLRGKLTGAGITANGIYAVVTAYAKKAGIEVDGLGVHGLRATAATNAL 230

Query: 275 SNGGDLRSIQSILGHFRLSTTQIY 298
            +  D+  +Q+ LGH  +STT+IY
Sbjct: 231 EHEADIAKVQAWLGHANISTTKIY 254


>gi|317124018|ref|YP_004098130.1| integrase [Intrasporangium calvum DSM 43043]
 gi|315588106|gb|ADU47403.1| integrase family protein [Intrasporangium calvum DSM 43043]
          Length = 511

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 130/299 (43%), Gaps = 39/299 (13%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLI-FLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           Q W ++L   RG+S    Q +  + R+F   FLA     ++ +    Q  +  + A    
Sbjct: 220 QEWTEHLRTRRGVS----QGWATEARRFAAGFLA-----ELPVDPDGQRLWDGVDAATVN 270

Query: 78  RRTQKIGD-------RSLKRSLSGI--KSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           R   + G+       R L  S+ G+   +FL     R I+       +R       LPRA
Sbjct: 271 RYVTRHGEGYSLSSRRHLVSSMRGLLDWAFLTGRLDRAISAGV----LRPAPAVPGLPRA 326

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+  Q        L+  +  +     R+ AI+ L+    LR  E  +L    +     TL
Sbjct: 327 LSAAQV-----QALIAAADTSTPAGRRDRAIVVLISRLALRAGEVAALALDELNWHAGTL 381

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYY-DLCP---FDLNLNIQL-PLFRGIRGKPLNPGVF 243
            + GKG ++  +P+   V +A+++Y  D  P    D  +  +L P   G+  K ++ GV 
Sbjct: 382 VVHGKGGRVLTLPIPTDVGQALVDYLRDGRPPGAVDRAVFTRLRPPLVGLSSKGIS-GV- 439

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              I  L    GL  +  AH LRH+ AT +L+ GG L   +++LGH R  TT +Y   +
Sbjct: 440 ---IAHLATEAGLG-TVHAHALRHTAATAVLAAGGSLIEARALLGHARTDTTMVYARTD 494


>gi|10955228|ref|NP_044257.1| hypothetical protein R751p48 [Enterobacter aerogenes]
 gi|32470064|ref|NP_863006.1| hypothetical protein p165897_094 [Escherichia coli]
 gi|53793938|ref|YP_112391.1| DNA integrase [uncultured bacterium]
 gi|60115543|ref|YP_209334.1| hypothetical protein SC029 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|134047152|ref|YP_001102016.1| integrase IntI1 for transposon Tn21 [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|152973776|ref|YP_001338815.1| integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|157412100|ref|YP_001481441.1| IntI1 integrase [Escherichia coli APEC O1]
 gi|161867947|ref|YP_001598128.1| hypothetical protein pOU7519_85 [Salmonella enterica subsp.
           enterica serovar Choleraesuis]
 gi|168239505|ref|ZP_02664563.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|169797532|ref|YP_001715325.1| integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE]
 gi|184156542|ref|YP_001844881.1| integrase [Acinetobacter baumannii ACICU]
 gi|237640301|ref|YP_002891156.1| IntI1 [Escherichia coli]
 gi|237810044|ref|YP_002894484.1| IntI1 [Escherichia coli]
 gi|302141607|ref|YP_003813066.1| integrase type 1 [Klebsiella pneumoniae]
 gi|313116705|ref|YP_004032855.1| integrase [Edwardsiella tarda]
 gi|13344938|gb|AAK19119.1|AF263520_1 integrase INTI1 [Pseudomonas aeruginosa]
 gi|149117|gb|AAA92744.1| IntI1 integrase [Escherichia coli]
 gi|288634|emb|CAA51182.1| integrase [Klebsiella aerogenes]
 gi|1572565|gb|AAC64460.1| Int [Enterobacter aerogenes]
 gi|13508544|emb|CAC35169.1| DNA integrase IntI1 [Achromobacter denitrificans]
 gi|15375396|gb|AAK95981.1| IntI1 integrase [Escherichia coli]
 gi|17046108|dbj|BAB72152.1| DNA integrase [Escherichia coli]
 gi|17157973|gb|AAL36429.1| IntI1 integrase [Pseudomonas aeruginosa]
 gi|24527229|gb|AAM89398.1| IntI1 integrase [Klebsiella pneumoniae]
 gi|28629321|gb|AAO49601.1| IntI1 [Escherichia coli]
 gi|30524990|emb|CAD56838.1| Integrase INTI1 [Pseudomonas aeruginosa]
 gi|33358378|gb|AAQ16665.1| IntI1 [Escherichia coli]
 gi|45758101|gb|AAS76313.1| Int [Salmonella enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|53136974|emb|CAG30882.1| DNA integrase [uncultured bacterium]
 gi|56786620|gb|AAA92752.2| IntI1 integrase [Escherichia coli]
 gi|70905581|gb|AAZ14844.1| IntI1 [Acinetobacter baumannii]
 gi|72536052|gb|AAZ73121.1| IntI1 [Klebsiella pneumoniae]
 gi|78057541|gb|ABB17271.1| site-specific recombinase [Vibrio cholerae]
 gi|78709991|gb|ABB48427.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar
           Kentucky]
 gi|84180556|gb|ABC54721.1| IntI1 [Vibrio cholerae]
 gi|86212237|tpd|FAA00063.1| TPA: IntI1 integrase [Escherichia coli]
 gi|90265400|emb|CAJ77082.1| Integrase [Acinetobacter baumannii]
 gi|99867125|gb|ABF67770.1| IntI1 integrase [Escherichia coli APEC O1]
 gi|108945866|gb|ABG23475.1| integrase [Morganella morganii]
 gi|110346525|emb|CAJ58443.1| class 1 DNA integrase [Pseudomonas aeruginosa]
 gi|126635814|gb|ABO21789.1| IntI1 [Pseudomonas aeruginosa]
 gi|133905071|gb|ABO41086.1| integrase IntI1 for transposon Tn21 [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|134034958|gb|ABO46012.1| integrase [Enterobacter cloacae]
 gi|148455749|gb|ABQ65123.1| IntI1 [Pseudomonas aeruginosa]
 gi|149850111|emb|CAG29002.1| IntI1 [Klebsiella pneumoniae]
 gi|150958558|gb|ABR80585.1| integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|161087326|gb|ABX56796.1| IntI1 [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|169150459|emb|CAM88359.1| Integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE]
 gi|183208136|gb|ACC55534.1| integrase [Acinetobacter baumannii ACICU]
 gi|191174836|emb|CAQ43032.1| DNA integrase [Pseudomonas aeruginosa]
 gi|197287812|gb|EDY27202.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|207999196|emb|CAQ52799.1| class 1 integrase [Pseudomonas aeruginosa]
 gi|222353664|emb|CAU08341.1| integrase [Pseudomonas aeruginosa]
 gi|223868914|gb|ACN22478.1| integrase 1 [Klebsiella oxytoca]
 gi|224983001|gb|ACN73419.1| IntI1 [Acinetobacter sp. NFM2]
 gi|225121196|gb|ACN81019.1| IntI1 integrase [Acinetobacter baumannii]
 gi|226876274|gb|ACO89459.1| IntI1 integrase [Cloning vector pPSX]
 gi|229561520|gb|ACQ77723.1| IntI1 [Escherichia coli]
 gi|229561900|gb|ACQ78101.1| IntI1 [Escherichia coli]
 gi|254595917|gb|ACT75274.1| integrase [Acinetobacter baumannii]
 gi|283148037|gb|ADB13428.1| class 1 integrase [Escherichia coli]
 gi|283484045|gb|ADB23335.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|289065298|gb|ADC80800.1| IntI1 [Escherichia coli]
 gi|289065323|gb|ADC80824.1| IntI1 [Escherichia coli]
 gi|294884937|gb|ADF47470.1| integrase [Pseudomonas aeruginosa]
 gi|296033872|gb|ADG84835.1| integrase type 1 [Klebsiella pneumoniae]
 gi|299757085|emb|CAB92435.2| class 1 integrase [Acinetobacter baumannii]
 gi|307639753|gb|ADN80878.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|311629588|gb|ACI29751.2| IntI1 [Pseudomonas aeruginosa]
 gi|312192342|gb|ADQ43828.1| integrase [Edwardsiella tarda]
 gi|316994927|gb|ADU79012.1| IntI1 [Aeromonas veronii]
 gi|317109966|gb|ADU90903.1| IntI1, DNA integrase [uncultured bacterium]
 gi|324007543|gb|EGB76762.1| integron integrase [Escherichia coli MS 57-2]
          Length = 337

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 135/327 (41%), Gaps = 59/327 (18%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVNWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQK 324
           YT+V  K GG  +    D   P  +++
Sbjct: 312 YTHV-LKVGGAGVRSPLDALPPLTSER 337


>gi|15808708|gb|AAL08437.1|AF326777_12 Tn21 integrase IntI1 [Shigella flexneri 2a]
          Length = 337

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 84/183 (45%), Gaps = 37/183 (20%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207
           LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R         
Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198

Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                                  +A   +     F  + +   P    +R   +    FQ
Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V   
Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKV 318

Query: 305 NGG 307
            G 
Sbjct: 319 GGA 321


>gi|62550837|emb|CAH64760.1| site-specific recombinase [uncultured bacterium]
 gi|194337964|emb|CAQ51376.1| InH class 1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 337

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 84/183 (45%), Gaps = 37/183 (20%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207
           LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R         
Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198

Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                                  +A   +     F  + +   P    +R   +    FQ
Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V   
Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKV 318

Query: 305 NGG 307
            G 
Sbjct: 319 GGA 321


>gi|116619764|ref|YP_821920.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222926|gb|ABJ81635.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 412

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 122/283 (43%), Gaps = 28/283 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKI--TIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           GLS  TL +Y     QFL        E+    +  +  L  T +  F+  R  +++    
Sbjct: 132 GLSPSTLLNYVPVAEQFL-------AERFHNAVPNVAMLRATHVTGFV-LRHARQLSPVR 183

Query: 88  LKRSLSGIKSFLKYLKKRKITT---ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
               ++ ++SF +YL+ R +      + +  + N   S +LPR L      T     +L 
Sbjct: 184 AGLMVTALRSFFRYLRHRGVIATDLAACVPTVPNWSLS-TLPRFLP-----TAAVESILE 237

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
               T  +  RN  IL LL   G+R  E + L+  +I      + I+GKG K   +PL+ 
Sbjct: 238 CCDRTTSVGRRNHTILLLLARLGVRAGEVVGLSLDDIDWSTGQITIRGKGGKSAQLPLVN 297

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL----NPGVFQRYIRQLRRYLGLPLS- 259
            V  A+ +Y      D   +    +F   R  PL    N       +R+  ++ G+  + 
Sbjct: 298 DVGSALADYLR---HDRPRSATRRVFLRNRA-PLVGFGNSSTISSLVRRALKHAGVESAH 353

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           T AH LRHS AT LL  GG L  I  +L H   +TT IY  V+
Sbjct: 354 TGAHVLRHSLATSLLRQGGSLDEIGELLRHQSPNTTAIYAKVD 396


>gi|288553931|ref|YP_003425866.1| site-specific integrase [Bacillus pseudofirmus OF4]
 gi|288545091|gb|ADC48974.1| site-specific integrase [Bacillus pseudofirmus OF4]
          Length = 348

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 132/302 (43%), Gaps = 37/302 (12%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS---KRR--- 79
           ++  G ++ TL+SY    R + +F  + T   + +  IR +    +R F++   + R   
Sbjct: 36  KVAEGRAEGTLKSYR---RVYGVFSEYLTNNDVQLD-IRAIETDTVRGFVAWLLRERIRW 91

Query: 80  -----------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
                      T+ +  RS+   +  +K+F  +L       + ++ +   + K   + + 
Sbjct: 92  DGHKHKPEYVQTKGLSPRSVNDHIKTLKTFFSFL------VDEDLADFNPVSKVKKVRQI 145

Query: 129 LNEKQALTLVD-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
             E   LT+ +   L+   +  K+ D R+  I+  L     RI+E  +L  ++I    +T
Sbjct: 146 EKEIDVLTVDELKALMSVPYHRKYADFRDYVIMTFLLDTMCRINEVCTLRKRDIDFKDNT 205

Query: 188 LRIQG---KGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           + I+    K  K R VP      + + E   ++  FD        +F    G+ L P  F
Sbjct: 206 VHIRAEITKTRKGRHVPFQKRTARLLKELIKEVDVFDSEY-----IFLSNYGEQLEPNHF 260

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +  ++   +  G+  +   H  RH+ AT  L  GGD+R +Q ILGH  L  T  YT+V+ 
Sbjct: 261 RSRLKGFAKKAGIERNVHPHLFRHTGATMFLEAGGDIRHLQLILGHADLRMTTRYTHVSG 320

Query: 304 KN 305
           K+
Sbjct: 321 KS 322


>gi|241992512|gb|ACS73592.1| IntI1 [uncultured bacterium]
 gi|241992515|gb|ACS73594.1| IntI1 [uncultured bacterium]
 gi|241992526|gb|ACS73602.1| IntI1 [uncultured bacterium]
 gi|241992530|gb|ACS73605.1| IntI1 [uncultured bacterium]
 gi|241992537|gb|ACS73610.1| IntI1 [uncultured bacterium]
 gi|241992541|gb|ACS73613.1| IntI1 [uncultured bacterium]
 gi|241992546|gb|ACS73616.1| IntI1 [uncultured bacterium]
 gi|241992555|gb|ACS73622.1| IntI1 [uncultured bacterium]
 gi|241992568|gb|ACS73632.1| IntI1 [uncultured bacterium]
 gi|241992575|gb|ACS73637.1| IntI1 [uncultured bacterium]
 gi|241992618|gb|ACS73667.1| IntI1 [uncultured bacterium]
 gi|241992621|gb|ACS73669.1| IntI1 [uncultured bacterium]
 gi|241992633|gb|ACS73677.1| IntI1 [uncultured bacterium]
 gi|241992638|gb|ACS73681.1| IntI1 [uncultured bacterium]
 gi|241992641|gb|ACS73683.1| IntI1 [uncultured bacterium]
 gi|241992644|gb|ACS73685.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 126/304 (41%), Gaps = 58/304 (19%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YTNV 301
           YT+V
Sbjct: 312 YTHV 315


>gi|229508884|ref|ZP_04398375.1| integrase [Vibrio cholerae B33]
 gi|229354159|gb|EEO19091.1| integrase [Vibrio cholerae B33]
          Length = 282

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 92/200 (46%), Gaps = 38/200 (19%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207
           LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R         
Sbjct: 84  LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 143

Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                                  +A   +     F  + +   P    +R   +    FQ
Sbjct: 144 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 203

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V  K
Sbjct: 204 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV-LK 262

Query: 305 NGGDWMMEIYDQTHPSITQK 324
            GG  +    D   P  +++
Sbjct: 263 VGGAGVRSPLDALPPLTSER 282


>gi|170293912|gb|ACB13045.1| IntI1 [Thauera sp. B4]
          Length = 337

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 84/183 (45%), Gaps = 37/183 (20%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207
           LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R         
Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198

Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                                  +A   +     F  + +   P    +R   +    FQ
Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V   
Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKV 318

Query: 305 NGG 307
            G 
Sbjct: 319 GGA 321


>gi|61398373|gb|AAX46051.1| integrase [Pseudomonas aeruginosa]
          Length = 337

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 135/327 (41%), Gaps = 59/327 (18%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSCLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQK 324
           YT+V  K GG  +    D   P  +++
Sbjct: 312 YTHV-LKVGGAGVRSPLDALPPLTSER 337


>gi|241992572|gb|ACS73635.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 83/177 (46%), Gaps = 37/177 (20%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207
           LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R         
Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198

Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                                  +A   +     F  + +   P    +R   +    FQ
Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|17386060|gb|AAL38574.1|AF445082_1 class I integrase [Acinetobacter baumannii]
 gi|47155069|emb|CAG26808.1| DNA integrase [Acinetobacter baumannii]
 gi|110350561|emb|CAK55555.1| integrase [Pseudomonas putida]
 gi|110350568|emb|CAK55561.1| integrase [Acinetobacter baumannii]
 gi|195977009|gb|ACG63564.1| DNA integrase [Citrobacter youngae]
          Length = 337

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 127/310 (40%), Gaps = 58/310 (18%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVNWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YTNVNSKNGG 307
           YT+V    G 
Sbjct: 312 YTHVLKVGGA 321


>gi|310766564|gb|ADP11514.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 344

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 117/253 (46%), Gaps = 24/253 (9%)

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL----NEK 132
           K   + +  R+ + +L  ++ + ++L K+ +   +   ++   +    LPR +      +
Sbjct: 94  KANGEPLSPRTQRTALQPLQVWFRWLAKQNLILANPAADLELPRLEKHLPRTILSVEQVE 153

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-Q 191
           + + L D   L           R+ A+L LL+  G+R  E   L   +    +  L I Q
Sbjct: 154 ETVNLCDLTTLQ--------GMRDRALLELLWSTGIRRGEVARLETWSADFSRKILTIVQ 205

Query: 192 GKGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLF---RGIRGKPLNPGVFQRYI 247
           GKG + R++P+       +  Y +++ P  + +     LF    G+ G   N G+    +
Sbjct: 206 GKGKQDRVIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVAGLTAN-GITHAVV 264

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
             LR   G+    + H  RH+ AT +L NG DLR IQ++LGH  + +TQIYT V+ +   
Sbjct: 265 PYLR-AAGIE-KGSCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRA-- 320

Query: 308 DWMMEIYDQTHPS 320
             +  ++  THP+
Sbjct: 321 --LQAVHASTHPA 331


>gi|126698818|ref|YP_001087715.1| putative tyrosine recombinase [Clostridium difficile 630]
 gi|254974757|ref|ZP_05271229.1| putative tyrosine recombinase [Clostridium difficile QCD-66c26]
 gi|255092146|ref|ZP_05321624.1| putative tyrosine recombinase [Clostridium difficile CIP 107932]
 gi|255306126|ref|ZP_05350298.1| putative tyrosine recombinase [Clostridium difficile ATCC 43255]
 gi|255313883|ref|ZP_05355466.1| putative tyrosine recombinase [Clostridium difficile QCD-76w55]
 gi|255516564|ref|ZP_05384240.1| putative tyrosine recombinase [Clostridium difficile QCD-97b34]
 gi|255649664|ref|ZP_05396566.1| putative tyrosine recombinase [Clostridium difficile QCD-37x79]
 gi|260682828|ref|YP_003214113.1| putative tyrosine recombinase [Clostridium difficile CD196]
 gi|260686426|ref|YP_003217559.1| putative tyrosine recombinase [Clostridium difficile R20291]
 gi|115250255|emb|CAJ68076.1| putative phage integrase site-specific recombinase XerD-like
           [Clostridium difficile]
 gi|260208991|emb|CBA62057.1| putative tyrosine recombinase [Clostridium difficile CD196]
 gi|260212442|emb|CBE03323.1| putative tyrosine recombinase [Clostridium difficile R20291]
          Length = 304

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 132/289 (45%), Gaps = 15/289 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE--IRAFIS 76
           + ++  ++ ++ LS+ T+ SY  D ++++        E I  ++I+ +   E  I +++ 
Sbjct: 5   EGYIDYIKDKKKLSENTVASYFMDIKKYM--------EYINQKSIKLVDIVENDIISYLI 56

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           K     +   ++ R +S IKSF  YL    I T +   +++  K        L E++   
Sbjct: 57  KLEKDNVSIATIARMISSIKSFHDYLFLNHICTNNPAKDIKKPKIKKENINILTEEEIER 116

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L++   L T    K I  R+ AI  +LYG G+++SE + +  ++I  D   +        
Sbjct: 117 LLNFPKLTTP---KLI--RDKAIFEVLYGTGIKVSELVEMNIEDIDLDIDYIYCNSCCKN 171

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R++PL    +  + +Y       + +  +  LF    G+        + I++      +
Sbjct: 172 QRVIPLCDITKLYLEKYLKEARPKMAVEGEKSLFVSSLGQRFTRQGLWKVIKKYSNLANI 231

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             +     LRHSFA HLL+ G ++  +  ILG+  LS+ Q+Y N   KN
Sbjct: 232 DKNINPTMLRHSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDKN 280


>gi|94985220|ref|YP_604584.1| phage integrase [Deinococcus geothermalis DSM 11300]
 gi|94555501|gb|ABF45415.1| phage integrase [Deinococcus geothermalis DSM 11300]
          Length = 369

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 134/288 (46%), Gaps = 30/288 (10%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S LTL++Y    RQFL   AF    +   + + QLS  +   ++   +   +   ++KR 
Sbjct: 56  SALTLKAYAESVRQFL---AFTGPPESPSRALNQLSAEDFEVWLLHLQEAGLKPNTIKRH 112

Query: 92  LSGIKSFLKYL---KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           L G+++ +K L      K    + +    +   +++  RAL + Q   L+   L    H 
Sbjct: 113 LYGVRNLMKALVWANVLKADPSAGVSPPTDPTPAHAKKRALTQAQMRALL--ALPGELHP 170

Query: 149 TKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
              + A R++ +L L    GLR +E + L   ++     TL ++GKG K R+VPL P+  
Sbjct: 171 EDSVQASRDALLLALGGTLGLRAAEIVGLDLADVDLATGTLTVRGKGGKTRVVPL-PAGV 229

Query: 208 KAILEYYDLCPFDLNLNIQLP--------LFRGIRGKPLNPG---VFQRYIRQLRRYLGL 256
           KA+L+ +   P    +N ++P        L RG  G+    G   +   Y RQL    GL
Sbjct: 230 KALLQRW--LPARQTVNPKVPALLVSLSSLNRG--GRLSTDGARFIAHAYYRQL----GL 281

Query: 257 PLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           P      HTLR +  THL     DL  +  +LGH  ++T+ IY  +++
Sbjct: 282 PPEMWGLHTLRRTAGTHLYRATRDLHVVADLLGHASVTTSAIYAKMDA 329


>gi|89147553|gb|ABD62636.1| integrase [uncultured bacterium]
 gi|89147624|gb|ABD62671.1| integrase [uncultured bacterium]
          Length = 163

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 47/74 (63%)

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           P+ R +R   L+  V Q+ IR   R  GL      HTLRHSFATHLL +G D+R++Q +L
Sbjct: 89  PVTRQVRRHHLHDSVIQKAIRDASRLSGLNKLIGPHTLRHSFATHLLESGSDIRTVQELL 148

Query: 288 GHFRLSTTQIYTNV 301
           GH  + TT IYT+V
Sbjct: 149 GHKHVQTTMIYTHV 162


>gi|297588425|ref|ZP_06947068.1| tyrosine recombinase XerC [Finegoldia magna ATCC 53516]
 gi|297573798|gb|EFH92519.1| tyrosine recombinase XerC [Finegoldia magna ATCC 53516]
          Length = 326

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 105/214 (49%), Gaps = 16/214 (7%)

Query: 95  IKSFLKYL---KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           I++F KYL   +K  I   + +L+  + KK+   P  L   ++L L+  +L     E K 
Sbjct: 101 IRTFYKYLINIRKLDIINPAELLD--SPKKNIRQPVYLTLDESLNLLKVILREKDEEIK- 157

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
             AR+  I  L   CG+R+SE  S+   +I    +TLR+ GKG+K R V L      A+ 
Sbjct: 158 --ARDYCITVLFLNCGMRLSELSSINIDHIK--TNTLRVIGKGNKERTVYLNDMCLDALD 213

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFA 270
            Y  + P   N      LF   +   ++    Q  I    +  G   S  + H LRH+ A
Sbjct: 214 NYLKIRPEIDND----ALFISKKRNRMSNRAIQYRIEHYLKAGGFDTSIYSVHKLRHTAA 269

Query: 271 THLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNS 303
           T +   G  D++ +Q ILGH  +STTQIYT+V++
Sbjct: 270 TLMYQYGNVDIKVLQEILGHESVSTTQIYTHVDN 303


>gi|198240906|gb|ABG36697.2| integrase [Salmonella enterica subsp. enterica serovar Newport]
          Length = 337

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 84/183 (45%), Gaps = 37/183 (20%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207
           LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R         
Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198

Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                                  +A   +     F  + +   P    +R   +    FQ
Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V   
Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKV 318

Query: 305 NGG 307
            G 
Sbjct: 319 GGA 321


>gi|296273270|ref|YP_003655901.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
 gi|296097444|gb|ADG93394.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
          Length = 351

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 118/261 (45%), Gaps = 24/261 (9%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI--- 113
           K    ++R++    +  F++ + T  + D S K     + SF  Y+ K+      N    
Sbjct: 89  KFGASSMREIDEEILSDFLASQ-TANLSDASKKNHRIALISFFGYIDKQNEEENGNAYRY 147

Query: 114 -LNMRNL-----KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
            + ++N      K    LP  +N+++    +   +     +   I  RN  I+ ++   G
Sbjct: 148 GIELKNWGGLSGKSGTKLPSYMNKEEVNKFI-KAIDEYPFKNPIIGTRNRLIIKIILYTG 206

Query: 168 LRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAILEYY---DLCPFDLN 222
           +R+ EA+S+  ++I  D     ++++GKG+K RIV +   + K  L  +   + C  +L 
Sbjct: 207 IRVGEAISIKIKDINKDGDAYIIQVRGKGNKPRIVMIKEHIIKDDLSTWLENNCCEENL- 265

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLR 281
                 LF   + K L      R + Q+    G+       H LRHSFAT L  N  DL 
Sbjct: 266 ------LFCNQKNKKLTQAYIGRLVEQILISCGIRKEKNGPHMLRHSFATLLYQNSHDLI 319

Query: 282 SIQSILGHFRLSTTQIYTNVN 302
            +Q  LGH  ++T++IYT+ +
Sbjct: 320 LVQESLGHADINTSRIYTHFD 340


>gi|42525368|gb|AAS18383.1| Int1 DNA integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 372

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 127/310 (40%), Gaps = 58/310 (18%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YTNVNSKNGG 307
           YT+V    G 
Sbjct: 312 YTHVLKVGGA 321


>gi|241992610|gb|ACS73661.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 83/177 (46%), Gaps = 37/177 (20%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207
           LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R         
Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198

Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                                  +A   +     F  + +   P    +R   +    FQ
Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|196251170|ref|ZP_03149847.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|196209334|gb|EDY04116.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 310

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 133/286 (46%), Gaps = 17/286 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++++ E+ R L + T++ Y  +   F+  L    E++I ++       T  R  I   + 
Sbjct: 21  FIEDCEL-RNLREHTIKYYRSELNAFIKLLK---EQEIELRVSEWTGETIKRNIIMYMKE 76

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   S+   L  +++F  +L+ R +   + + +++ LK    +    + +Q   L   
Sbjct: 77  KGLKTVSINSRLRALRAFFNFLEGRNLIKSNPMKDIKLLKDRKRIVETFDNQQIKALFKA 136

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRI 199
             L T     ++  R+  I+ LL   G+R++E + +   +I+ +Q  +RI+  KG   R 
Sbjct: 137 CDLRT-----FVGLRDYTIMMLLLETGVRVNELVGIKTTDIIWEQKVIRIRNTKGGFERF 191

Query: 200 VPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP- 257
           VP+   +   + +Y  +    D +      LF      PL+    Q  I++  +  G+  
Sbjct: 192 VPIQDKMINQLKKYIAVRGSVDTDY-----LFITRDDTPLSKKQVQDRIKEYGKKAGIKN 246

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +  + HT RH+FA   + NG +   +Q+ILGH  L  T++Y N+ S
Sbjct: 247 VRCSPHTFRHTFAKLCVLNGANAFQLQAILGHTSLEMTKVYVNLFS 292


>gi|225629572|ref|ZP_03787600.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
 gi|225591574|gb|EEH12586.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
          Length = 280

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 133/287 (46%), Gaps = 27/287 (9%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-I 83
           L  ER  ++ TL+SY  D  Q   FL    E   T+  + +   T I+ ++    TQK  
Sbjct: 3   LASERSATQNTLESYRSDLHQLEEFL---LESGTTLVGVNK---TNIKDYVKSLCTQKKY 56

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKIT----TESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              S+ R +S +K+F K L    I       +N   ++N K S  LP+ L+ ++   L+D
Sbjct: 57  KSSSISRKISAMKNFYKCLFNDGIIDFNPAPANDAELKNPKVSRPLPKYLSVEEIFLLMD 116

Query: 140 NVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIM------DDQSTLRIQG 192
            V    S   K I + R  AIL +LY  G+R+SE +S+    +       + +  + I+G
Sbjct: 117 AVRKSASESNKEISSKRLCAILDILYSSGMRVSELISMKLCEVSHLINSNNKECYIIIKG 176

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           K  + R +       +++  Y  +    L N      LF G   KP  P   QR + QL 
Sbjct: 177 KSGRERQILFNEQALQSLRNYLSVRDNLLSNRKESDWLFPG--DKPNKPITRQR-VAQLM 233

Query: 252 RYLGLPLST-----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           + L    +      + H +RHSFATHLL +G ++  IQ +LGH  LS
Sbjct: 234 KELARKCNIDENKISPHVIRHSFATHLLDSGANIVLIQKVLGHTNLS 280


>gi|241992627|gb|ACS73673.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 83/177 (46%), Gaps = 37/177 (20%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207
           LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R         
Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198

Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                                  +A   +     F  + +   P    +R   +    FQ
Sbjct: 199 WLKDQAEGRSGVALPDTLERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|212696176|ref|ZP_03304304.1| hypothetical protein ANHYDRO_00712 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676805|gb|EEB36412.1| hypothetical protein ANHYDRO_00712 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 330

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 148/315 (46%), Gaps = 37/315 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFL----AFYTE----------EKITIQTIR 64
            ++L  L+  R LS+ T+  Y  D   F+ +      +Y +          E I I  I 
Sbjct: 10  DDYLSYLKSIRALSEKTISEYRYDLINFIYYQILRKVYYNDKQNLNKDIEDENININKIF 69

Query: 65  QLSYT------EIRAFISKRRTQKIGDRSLKRS--LSGIKSFLKYLKKRKITTESNILN- 115
             S+       ++ ++IS    + + D +  RS  +S ++SF KYL +     ++NI   
Sbjct: 70  NKSFISDINIQDMYSYISYLDNE-LNDNASTRSRKISALRSFYKYLHQEIEMIDNNITEK 128

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +RN K     P  L   +   L++ +      + +++  R+ AI++     G+R+SE +S
Sbjct: 129 LRNPKIQKRQPVYLTLSETELLLETI---NEEKNEFLRNRDMAIVFTFLTTGMRLSELVS 185

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF---DLNLNIQLPLFRG 232
           +   +I DD  T  I GKG+K R + L  +    I  Y  +      D+ +N    LF  
Sbjct: 186 VDLNDIKDDHFT--IIGKGNKERTIYLTKNCIDLIDNYIMIRKNYLKDIKIN---ALFIS 240

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DLRSIQSILGHF 290
            R K ++    Q  + +  +  G      + H LRH+ AT +   G  D+R+++ +LGH 
Sbjct: 241 TRKKRISNRAVQSTVDKYLKKAGFDTRVYSTHKLRHTAATLMYKYGNVDIRALKDVLGHE 300

Query: 291 RLSTTQIYTNVNSKN 305
            +STTQIYT++++++
Sbjct: 301 SVSTTQIYTHLDNED 315


>gi|221218583|ref|YP_002527541.1| class 1 integron integrase protein IntI1 [Escherichia coli]
 gi|261888715|ref|YP_003264403.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|215252911|gb|ACJ63570.1| class 1 integron integrase protein IntI1 [Escherichia coli]
 gi|261857302|emb|CBA11369.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|312949085|gb|ADR29911.1| class 1 integron integrase protein IntI1 [Escherichia coli O83:H1
           str. NRG 857C]
          Length = 372

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 127/310 (40%), Gaps = 58/310 (18%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YTNVNSKNGG 307
           YT+V    G 
Sbjct: 312 YTHVLKVGGA 321


>gi|330468102|ref|YP_004405845.1| integrase family protein [Verrucosispora maris AB-18-032]
 gi|328811073|gb|AEB45245.1| integrase family protein [Verrucosispora maris AB-18-032]
          Length = 333

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 10/227 (4%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL-NEKQALTLVDNVLLHT 145
           S+ R+ S   SF  +L   ++   + +  +   +     P+ L  E     L+ +     
Sbjct: 82  SVGRAWSTWNSFFTFLVAEQVVPGNPMPAVGRPRMPLPQPKPLRGEDTPEQLLASAARGE 141

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--GKGDKIRIVPLL 203
             +      R+ A+L L    GLR+SE L+L   ++       R++  GKG + R++P+ 
Sbjct: 142 GRQRDPWPERDVAVLALALCAGLRLSELLALRVGSLSGRPGERRVEVAGKGGRPRVLPVE 201

Query: 204 PSVRKAILEYYD--LCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL---- 256
           P + + +  Y D  +  F    +    PL    RG+PL  G  Q  +    R  G+    
Sbjct: 202 PGLDEVLSAYLDSRVRRFGTRTVRPDSPLLVDRRGEPLRRGGLQYLVESCYRRAGIGDRV 261

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           P     H LRH+FAT L  +G     I  +LGH  L+++Q Y  V +
Sbjct: 262 PRGARLHALRHTFATRLAEDGAGAAEIMRLLGHASLASSQTYIEVTA 308


>gi|169824446|ref|YP_001692057.1| site-specific tyrosine recombinase XerC [Finegoldia magna ATCC
           29328]
 gi|302380744|ref|ZP_07269209.1| site-specific tyrosine recombinase XerC [Finegoldia magna
           ACS-171-V-Col3]
 gi|167831251|dbj|BAG08167.1| integrase [Finegoldia magna ATCC 29328]
 gi|302311687|gb|EFK93703.1| site-specific tyrosine recombinase XerC [Finegoldia magna
           ACS-171-V-Col3]
          Length = 326

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 105/214 (49%), Gaps = 16/214 (7%)

Query: 95  IKSFLKYL---KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           I++F KYL   +K  I   + +L+  + KK+   P  L   ++L L+  +L     E K 
Sbjct: 101 IRTFYKYLINIRKLDIINPAELLD--SPKKNIRQPVYLTLDESLDLLKVILREKDEEIK- 157

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
             +R+  I  L   CG+R+SE  S+   +I    +TLR+ GKG+K R V L      AI 
Sbjct: 158 --SRDYCITVLFLNCGMRLSELSSINIDHIK--TNTLRVIGKGNKERTVYLNDMCLDAID 213

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFA 270
            Y  + P   N      LF   +   ++    Q  I    +  G   S  + H LRH+ A
Sbjct: 214 NYLKIRPEIDND----ALFISKKRNRMSNRAIQYRIEHYLKIGGFDTSIYSVHKLRHTAA 269

Query: 271 THLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNS 303
           T +   G  D++ +Q ILGH  +STTQIYT+V++
Sbjct: 270 TLMYQYGNVDIKVLQEILGHESVSTTQIYTHVDN 303


>gi|193062841|ref|ZP_03043934.1| integrase [Escherichia coli E22]
 gi|192931484|gb|EDV84085.1| integrase [Escherichia coli E22]
          Length = 337

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 98/237 (41%), Gaps = 33/237 (13%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSN 123
           Q++   I  +   RR Q I   S+ R L+ +   F   +       E     M+ LK+  
Sbjct: 100 QITKALISQYSMTRRGQGIKPTSINRDLTCLSGMFTALIDAELFFGEHPFRGMKKLKEQK 159

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
                L +++   L+ N           +D  N  I  L    G R  EA  L  +N++ 
Sbjct: 160 PETGYLTQEEITLLLAN-----------LDGDNKKIAILCLSTGARWGEAAKLKAENVIQ 208

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           ++ T  ++ K +K R VP+   V   I     L P     +   P FR            
Sbjct: 209 NRVTF-VKTKTNKPRTVPISEEVAVMIAGKGYLFP-----DASYPKFR------------ 250

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            R ++ ++    LP     H LRHSFATH + NGG + ++Q ILGH R+  T +Y +
Sbjct: 251 -RTMKDVKP--DLPDGQATHALRHSFATHFMINGGSIITLQRILGHSRIEQTMVYAH 304


>gi|41057046|ref|NP_957649.1| putative site-specific recombinase/integrase [Bacillus
           methanolicus]
 gi|40074231|gb|AAR39395.1| putative site-specific recombinase/integrase [Bacillus methanolicus
           MGA3]
          Length = 284

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 77/155 (49%), Gaps = 17/155 (10%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQ--NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
           + RN A++ LL   GLRISEAL+L  Q  N++  + T+R  GKGDK R+V +   V+ A+
Sbjct: 127 NKRNYALVTLLAYAGLRISEALNLKMQDFNLVSREITVR-SGKGDKFRVVFMNDKVKAAL 185

Query: 211 LEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
             +           D        LF   R +PLN     +  ++    +G  +  T H L
Sbjct: 186 QSWLKERKEKGIEHDF-------LFVSNRNQPLNRTTINKLFKEYSEPIGKDI--TPHDL 236

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           RH F +H +S G  +  + +  GH  + TT +YTN
Sbjct: 237 RHFFCSHAISRGLSVHEVANQAGHSNIHTTLLYTN 271


>gi|32267344|ref|NP_861376.1| integrase/recombinase XerD [Helicobacter hepaticus ATCC 51449]
 gi|32263397|gb|AAP78442.1| integrase/recombinase XerD [Helicobacter hepaticus ATCC 51449]
          Length = 362

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 125/271 (46%), Gaps = 34/271 (12%)

Query: 51  AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE 110
           AF T+   +I T+  +    +  F+S   T  + + S K     +  F  Y+ K+  +  
Sbjct: 86  AFLTQS--SIDTMEDIDEEVLSDFLS-VETSALSNASKKNYRIALIGFFGYIDKQNESDG 142

Query: 111 SNILNMRNLKKSN-------SLPRALNEK---QALTLVDNVLLHTSHETKWIDARNSAIL 160
           ++ +    LK S+        LP  LN+K   Q L  +D      S   + + ARN  I+
Sbjct: 143 ASYVYDITLKISSLQGKSGQKLPSFLNQKELEQFLRAIDE-----SQLGEKVAARNKLII 197

Query: 161 YLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY---- 214
            L+   G+R+SEAL+L  ++I+   D   + I+GKG+K R+V +  S  + +L  +    
Sbjct: 198 KLIVYTGIRVSEALNLRCKDILPAKDCYLISIRGKGNKPRVVMIRQSHIQNLLNTWLTQR 257

Query: 215 -DLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFAT 271
               P  DL       LF   +GK L      + +  +    G+      AH LRHSFAT
Sbjct: 258 LGFSPMHDL-------LFCNAKGKALTQSYIYKNVENILTQAGIRKEKNGAHMLRHSFAT 310

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            L     DL  +Q  LGH  L+T++IYT+ +
Sbjct: 311 LLYQQKHDLVMVQEALGHSDLNTSRIYTHFD 341


>gi|241992647|gb|ACS73687.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 126/304 (41%), Gaps = 58/304 (19%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LPRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YTNV 301
           YT+V
Sbjct: 312 YTHV 315


>gi|241992598|gb|ACS73653.1| IntI [uncultured bacterium]
          Length = 316

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 46/69 (66%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           IR   L P   QR IRQ  +  G+    T HTLRHSFATHLL +G D+R++Q +LGH  +
Sbjct: 248 IRRHHLYPQSLQRAIRQAVQAAGIVKPATTHTLRHSFATHLLMSGYDIRTVQELLGHADV 307

Query: 293 STTQIYTNV 301
           +TT IYT+V
Sbjct: 308 ATTMIYTHV 316


>gi|89147568|gb|ABD62643.1| integrase [uncultured bacterium]
 gi|89147616|gb|ABD62667.1| integrase [uncultured bacterium]
          Length = 163

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 47/74 (63%)

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           P+ R +R   L+  V Q+ IR   R  GL      HTLRHSFATHLL +G D+R++Q +L
Sbjct: 89  PVTRQVRRHHLHDSVIQKAIRDASRLSGLNKLIGPHTLRHSFATHLLESGSDIRTVQELL 148

Query: 288 GHFRLSTTQIYTNV 301
           GH  + TT IYT+V
Sbjct: 149 GHKHVQTTMIYTHV 162


>gi|241992508|gb|ACS73589.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 83/177 (46%), Gaps = 37/177 (20%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207
           LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R         
Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198

Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                                  +A   +     F  + +   P    +R   +    FQ
Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|259503196|ref|ZP_05746098.1| tyrosine recombinase XerD [Lactobacillus antri DSM 16041]
 gi|259168853|gb|EEW53348.1| tyrosine recombinase XerD [Lactobacillus antri DSM 16041]
          Length = 295

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 135/303 (44%), Gaps = 15/303 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L+   G S  TL SY  D  Q +   AF+ +  ++  T   +   ++ A +++++
Sbjct: 7   KYLAYLKSNHGRSANTLLSYRRDLDQAV---AFFRQRGVSDWTA--VDQYQLLALVAEQK 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +     ++ R LS ++ F +YL + +    +    + N ++++  P  +     LT  +
Sbjct: 62  KRGRSPATINRQLSALRQFYRYLVRHQQLRFNPTELIDNQEQTDDTPPVI-----LTAAE 116

Query: 140 -NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              LL   +    +  R+ A+L +L   G+R+SE ++L   ++  D   LR+     + R
Sbjct: 117 IKQLLAAPNPDHPLGKRDRAMLAVLATTGMRVSELVALLLTDLHLDIKMLRLGSGSRRER 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VP+     + +  Y       L    +  +F    G  L      + +R+L R  G+  
Sbjct: 177 LVPVSDQAVQELEHYLAAVRPQLAAMGEQAVFVNAHGHQLTRQGIWKKLRELVRRAGIEK 236

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + T  TLR+SFA  LL +G D R IQ +LG+  L   + Y  +  +     +   Y Q  
Sbjct: 237 TVTPRTLRYSFAVQLLQSGADGRLIQEMLGYSELRAIKPYLKMTVQE----LSADYRQHQ 292

Query: 319 PSI 321
           P I
Sbjct: 293 PKI 295


>gi|258648849|ref|ZP_05736318.1| putative nicotinate-nucleotide pyrophosphorylase [Prevotella
           tannerae ATCC 51259]
 gi|260850863|gb|EEX70732.1| putative nicotinate-nucleotide pyrophosphorylase [Prevotella
           tannerae ATCC 51259]
          Length = 334

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 81/167 (48%), Gaps = 16/167 (9%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI-RIVPLLPSVRKAILEYY-- 214
           AIL LLYG G+R+SEA SL  Q+I  ++  + I+   ++  R++P+  S+ + + +Y   
Sbjct: 143 AILRLLYGTGMRVSEATSLLNQDINLEKRVITIRKTKNQCQRLIPVCSSLYRVLSQYVEA 202

Query: 215 -DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT----AHTLRHSF 269
            D  P     N++ P F    G PL+      + R + R  G+P         H LRH+F
Sbjct: 203 RDRLPLPHADNMESPFFISPSGLPLSQSRIYAWFRIILRKCGIPHCAKKGPRVHDLRHTF 262

Query: 270 ATHLL----SNGGDLRSIQSI----LGHFRLSTTQIYTNVNSKNGGD 308
           A H L     NG D+     I    LGH +LS T+ Y  +  +   D
Sbjct: 263 AVHSLMHQVKNGADVYCTLPILAVFLGHKKLSDTETYVRLTQEMYSD 309


>gi|227461198|gb|ACP39544.1| putative integron integrase [uncultured microorganism]
          Length = 299

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 119/258 (46%), Gaps = 50/258 (19%)

Query: 93  SGIKSFLKYLK-KRKI--TTESNILNMRNLKKSNSLPRALNEKQALTLVDNV----LLHT 145
           +GI  F+ +L  KR++  +T+S  LN    +  + L   + +   L  V  +    ++ T
Sbjct: 43  AGIAPFVNWLATKRQVAASTQSQALNAVLFRYRDVLELDVGQLDGLRRVQRLSRLPVVLT 102

Query: 146 SHETK----WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV 200
             E +     ++  +  +  LLYG GLRI+E ++L  ++I    +T+ ++ GKG + R  
Sbjct: 103 IEEVRRLLGALEGTSKLLAELLYGTGLRITECMTLRTKDIDLSATTIHVRAGKGGEDRTA 162

Query: 201 PLLPS-----VRKAILEYYDL-----------CPFDLNLNIQLP----------LF--RG 232
            LLPS     +R  +L    L            P    L  + P          LF  R 
Sbjct: 163 -LLPSRLRDRIRDQVLAVARLHKRDIAAGAGHAPLPGGLGRKYPNASRELKWQFLFPSRS 221

Query: 233 IRGKP---------LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
           IR  P          +    Q+  +     +G+    +  TLRHSFATHLL+ G D+R+I
Sbjct: 222 IRPCPGTGRLLRWHASESTLQKRFKMALLAVGIHKQASVRTLRHSFATHLLATGTDIRTI 281

Query: 284 QSILGHFRLSTTQIYTNV 301
           Q +LGH  L TT+IYT+V
Sbjct: 282 QLLLGHRNLKTTRIYTHV 299


>gi|56475683|ref|YP_157272.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|58616519|ref|YP_195648.1| putative integrase [Azoarcus sp. EbN1]
 gi|58616531|ref|YP_195660.1| putative integrase [Azoarcus sp. EbN1]
 gi|56311726|emb|CAI06371.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|56315981|emb|CAI10624.1| putative integrase [Aromatoleum aromaticum EbN1]
 gi|56315993|emb|CAI10636.1| putative integrase [Aromatoleum aromaticum EbN1]
          Length = 332

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 128/304 (42%), Gaps = 21/304 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            SF  L ER  + Q L  +R  S  T+ SY    RQFL F+     +  +  ++ ++   
Sbjct: 5   ASFAALLER-FFTQRLMQQRQASPHTISSYRDTFRQFLKFVQQRLHKSPSRLSLEEIDAP 63

Query: 70  EIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            I AF+    + +++  RS    L+ I SF +Y+        + I  +  +  S    R 
Sbjct: 64  LIVAFLDDLEKCRRVSIRSRNLRLTAIHSFFRYVAFEAPEHSAQIQRVLAIP-SKRFTRN 122

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQST 187
           L    A   VD +L      T W   R+ A L +    GLR+SE   L   + I+   + 
Sbjct: 123 LVSFLARAEVDALLAAPDQHT-WSGRRDHAFLLVAVQTGLRLSEMTGLKRDDLILGAGAH 181

Query: 188 LRIQGKGDKIRIVPLLPS---VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           +R+ GKG K R  PL  S   V KA L        D+       LF   +G+ L+    Q
Sbjct: 182 VRVVGKGRKERCTPLAKSTLTVLKAWLREPQRGEGDV-------LFPSAKGERLSVHGVQ 234

Query: 245 RYIRQLRRYL--GLPLST----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             + + R       P  T    T H LRH+ A  LL  G D   I   LGH  + TTQIY
Sbjct: 235 YLLNKHRLAASEACPSLTQKRITVHRLRHTMAMDLLQAGVDRSVIALWLGHESVETTQIY 294

Query: 299 TNVN 302
            + N
Sbjct: 295 LDAN 298


>gi|56421448|ref|YP_148766.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
 gi|56381290|dbj|BAD77198.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
          Length = 337

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 134/286 (46%), Gaps = 17/286 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++++ E+ R L + T++ Y  +   F+  L    E++I ++       T  R  I   + 
Sbjct: 48  FIEDCEL-RNLREHTIKYYRSELNAFVKLLK---EQEIELRVSEWTGETIKRNVIMYMKE 103

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   S+   L  +++F  +L+ R +   + + +++ L+    +    + +Q   L   
Sbjct: 104 KGLKTVSINSRLRALRAFFNFLEGRNLIKSNPMKDIKLLRDRKRIVETFDNQQIKALFKA 163

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRI 199
             L T     ++  R+  I+ LL   G+R++E +S+   +I+ +Q  +RI+  KG   R 
Sbjct: 164 CDLRT-----FVGLRDYTIMMLLLETGVRVNELVSIKTTDIIWEQKVIRIRNTKGGFERF 218

Query: 200 VPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP- 257
           VP+   +   + +Y  +    D +      LF      PL+    Q  I++  +  G+  
Sbjct: 219 VPIQDKMINQLKKYIAVRGSVDTDY-----LFITRDDTPLSKKQVQDRIKEYGKKAGIKN 273

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +  + HT RH+FA   + NG +   +Q+ILGH  L  T++Y N+ S
Sbjct: 274 VRCSPHTFRHTFAKLCVLNGANAFQLQAILGHTSLEMTKVYVNLFS 319


>gi|89147446|gb|ABD62583.1| integrase [uncultured bacterium]
          Length = 163

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 45/69 (65%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R   ++P   QR +R+  +  G+    + HTLRHSFATHLL NG DLR IQ +LGH  +
Sbjct: 94  VRRHHVSPEALQRAVREAVKKAGMVKPVSVHTLRHSFATHLLLNGVDLRQIQELLGHANV 153

Query: 293 STTQIYTNV 301
            TT IYT+V
Sbjct: 154 ETTMIYTHV 162


>gi|89147444|gb|ABD62582.1| integrase [uncultured bacterium]
          Length = 163

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 45/69 (65%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R   ++P   QR +R+  +  G+    + HTLRHSFATHLL NG DLR IQ +LGH  +
Sbjct: 94  VRRHHVSPEALQRAVREAVKKAGMVKPVSVHTLRHSFATHLLLNGVDLRQIQELLGHANV 153

Query: 293 STTQIYTNV 301
            TT IYT+V
Sbjct: 154 ETTMIYTHV 162


>gi|54295982|ref|YP_122294.1| hypothetical protein plpp0140 [Legionella pneumophila str. Paris]
 gi|53755814|emb|CAH17317.1| hypothetical protein plpp0140 [Legionella pneumophila str. Paris]
          Length = 194

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 76/156 (48%), Gaps = 12/156 (7%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-------RIQGKGDKIRIVPLL-PSV 206
           RNSA++Y  +G GLR+ E  SLT  ++ D    L       R   KG+K R   L    +
Sbjct: 30  RNSALVYCSFGLGLRVKEIASLTIADVADYNYQLLEEICLKRSMTKGEKQRYAYLANEKI 89

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           RKA+  + D      ++    PLF+  R     P   Q++ + L    G+ +  ++H+ R
Sbjct: 90  RKALQAHLDTLK---HVARDKPLFQTQRKSRFTPNSLQKWFKSLYDKAGI-IGASSHSGR 145

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +F T L+  G D++++  + GH  + TT IY   N
Sbjct: 146 RTFITRLIEQGADIKAVSRLAGHANIVTTAIYVEDN 181


>gi|327538852|gb|EGF25495.1| tyrosine type site-specific recombinase [Rhodopirellula baltica
           WH47]
          Length = 301

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 85/175 (48%), Gaps = 22/175 (12%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           +KS  LP  +++K+   +++               R+  +L +LY  GLR++E   L   
Sbjct: 142 RKSKQLPVVMSKKEVQRMMEAAR----------TLRDKLLLTVLYATGLRVAEVARLQWS 191

Query: 180 NIMDDQSTLRIQ-GKGDKIRIV----PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +   D+  +R+Q GKG K R V     LLP +R+       L      +    P      
Sbjct: 192 DFDFDRQQIRVQLGKGKKDRYVMLADDLLPLMRQ-------LWRRTKGVGYLFPSEGRRV 244

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
            + L+P   QR ++Q R   G+  + T H+ RHSFATHL+ +G D+R IQ +LGH
Sbjct: 245 DRHLSPRTIQRAVKQARILSGIGKAVTPHSFRHSFATHLIESGTDIRFIQKLLGH 299


>gi|309791377|ref|ZP_07685887.1| integron integrase [Oscillochloris trichoides DG6]
 gi|308226584|gb|EFO80302.1| integron integrase [Oscillochloris trichoides DG6]
          Length = 321

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 87/184 (47%), Gaps = 41/184 (22%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKG--DKIRIVP--LLPSVRKAILEYY 214
           LLYG GLR+ E L L  +++  D   L++    GKG  D++ ++P  L+  +R  +++  
Sbjct: 131 LLYGSGLRLMECLRLRVKDL--DFQMLQVVVRDGKGMRDRLTMLPATLVEPLRAHLVQVK 188

Query: 215 DLCPFDL-----NLNIQLPLFR---------------------------GIRGKPLNPGV 242
            +   DL      + +   L R                            IR   ++ G 
Sbjct: 189 QIFEQDLADGYGEVYLPFALVRKSPDAARSWAWQYLFPAEQRSRDPRSGAIRRHHVHEGS 248

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            QR +    R  G+    + HT RHSFATHL+ NG D+R++Q +LGH  + TT IYT+V 
Sbjct: 249 LQRAVHDAVRASGITKHASCHTFRHSFATHLIENGYDIRTVQELLGHSDVKTTMIYTHVL 308

Query: 303 SKNG 306
           ++ G
Sbjct: 309 NRGG 312


>gi|320333098|ref|YP_004169809.1| integrase family protein [Deinococcus maricopensis DSM 21211]
 gi|319754387|gb|ADV66144.1| integrase family protein [Deinococcus maricopensis DSM 21211]
          Length = 297

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 127/286 (44%), Gaps = 19/286 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +  +L I+R  SK TL  Y+   R    FL    +E IT  T  +L+ T +RAF+   
Sbjct: 8   EQFAYHLRIKR-RSKNTLNFYDVSRRTLHRFL---EQEGITPDT-DELTVTHLRAFLVWL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q +G   +      +K+   +  + ++ T       RN      LP    E+Q    V
Sbjct: 63  GDQGLGPGGIHAQARALKAVFNWGFREELLT-------RNPAVRLELPSLPKERQPTVTV 115

Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           + +  LL     T+    R+SAI+ +L   GLR+ E + L  +++  ++  +R+ GKG+K
Sbjct: 116 EVMRSLLKACKGTER-PLRDSAIVLMLLDTGLRVHELIGLKLEDLQFERGLIRVVGKGNK 174

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R VP+      A   Y  L       +  +P +F    G+ +        + +L R  G
Sbjct: 175 ERFVPVGSKAMSATSAY--LRRERKQRHPGVPHVFLSRSGEVMTRSGISIRLAKLARSTG 232

Query: 256 LPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +     A H  R  FA   L NGGD+ ++Q I+GH  L  T+ Y  
Sbjct: 233 IEREACAPHAFRRGFAVEFLRNGGDVFTLQQIMGHSSLDMTRRYVT 278


>gi|45673|emb|CAA31355.1| unnamed protein product [Plasmid pLMO20]
          Length = 337

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 84/183 (45%), Gaps = 37/183 (20%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207
           LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R         
Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198

Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                                  +A   +     F  + +   P    +R   +    FQ
Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V   
Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKV 318

Query: 305 NGG 307
            G 
Sbjct: 319 GGA 321


>gi|116626672|ref|YP_828828.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229834|gb|ABJ88543.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 371

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 129/294 (43%), Gaps = 30/294 (10%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ-TIRQLSYTEIRAFISKRRTQKI 83
           L  +R +S  T+ SY  DT + L+  A     K   Q  +  L  + + AF+     ++ 
Sbjct: 19  LMAQRKVSPHTIASYR-DTFRLLLQFAQKRLRKAPSQLGLDDLDASLVGAFLEDLENRRH 77

Query: 84  -GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD--- 139
            G RS    L+ I+SF +Y    +    S I+     ++  ++P   N++Q   LV    
Sbjct: 78  NGARSRNLRLTAIRSFFRY-ASLEAPAHSGII-----QRVLAIP---NQRQRRALVGFLT 128

Query: 140 ----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKG 194
                 LL   + T+W+  R+ A L      GLR+SE   L  +++ +   + +R +GKG
Sbjct: 129 RPEIEALLAAPNRTQWLGRRDHAFLLTAVQTGLRLSEMTGLRQEDVSLGAGAHVRCRGKG 188

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ----RYIRQL 250
            K R  PL      A+L+ +     +        LF   RG PL+    Q    R++ Q 
Sbjct: 189 RKERCTPLAKPT-AAVLKAWIR---EQGRGDSKTLFPSTRGGPLSADGVQHLLARHVAQA 244

Query: 251 RRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           R++         + H LRH+ A  LL  G D   I   LGH  + TTQIY + +
Sbjct: 245 RKHCASLRKKRVSPHVLRHAAAMELLQGGVDRAVIALWLGHESVETTQIYLDAD 298


>gi|224437705|ref|ZP_03658652.1| integrase/recombinase XerD [Helicobacter cinaedi CCUG 18818]
          Length = 393

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 96/197 (48%), Gaps = 24/197 (12%)

Query: 120 KKSNSLPRALNEKQA---LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           K    LP  LN+ +    L  +D   L      + + ARN  I+ L+   G+R+SEAL+L
Sbjct: 159 KSGQKLPAYLNQDELERFLQAIDEAEL-----GEKVAARNKLIIKLIVYTGIRVSEALNL 213

Query: 177 TPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-----DLCPF-DLNLNIQLP 228
             ++I    D   ++I+GKG+K R+  +  S  + +L+ +        P  DL       
Sbjct: 214 RRKDIYPHLDCYIIQIRGKGNKPRVAMIRQSHIQNLLDVWLTQRLSFAPLHDL------- 266

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           LF   +GK L      + + ++    G+      AH LRHSFAT L     DL  +Q  L
Sbjct: 267 LFCNTKGKALTQSYIYQNVEKILAQSGIRKEKNGAHMLRHSFATLLYQQKHDLVMVQEAL 326

Query: 288 GHFRLSTTQIYTNVNSK 304
           GH  L+T++IYT+ +SK
Sbjct: 327 GHADLNTSRIYTHFDSK 343


>gi|319427383|gb|ADV55457.1| ISSod25 integrase [Shewanella putrefaciens 200]
          Length = 287

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 109/225 (48%), Gaps = 27/225 (12%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           +LK  L+GI    +++  R  T + ++      K+ + LP+ L+ +     +  +L H  
Sbjct: 65  TLKLQLNGIHFLYEHVLGRDFTVQLSLP-----KRPHKLPQLLSCQD----IAALLYHCQ 115

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205
                 + +  A+L L YGCGLR+SE   +   +I   +  L++ QGKG   R+V + P+
Sbjct: 116 ------NLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGAYDRLVIISPT 169

Query: 206 VRKAILEYY-DLCPFDLNLNIQLPLFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTT 261
           +   + +Y+    P +        LF         PL+   F++ + +  R  G+    +
Sbjct: 170 LLTLLRQYWRAYHPVEW-------LFASTYHDVVYPLHESTFRKALAKSARLAGITKPCS 222

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
            H+LRH++ATH L  G  L  +Q+ LGH  + +T+ Y + + + G
Sbjct: 223 PHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPELG 267


>gi|237719899|ref|ZP_04550380.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229450451|gb|EEO56242.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 337

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 118/252 (46%), Gaps = 23/252 (9%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN--EKQALTLVDNVLLHTSHET 149
           LS +++FLKY+  R +T  +  L   N+    +  R +    K+A+      +L   ++ 
Sbjct: 92  LSALRAFLKYVADRDMTYMAVFLQAENIPNEKTPKRKVIGLSKKAV----KAILSVPNQR 147

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVR 207
                R+  ++ LLY   +R++E L+L   NI+ D  +  + + GKG K R +PLL    
Sbjct: 148 TATGFRDFTLMLLLYSTAIRVNELLTLKISNIVMDCTKPHMIVIGKGRKKRPLPLLSQPV 207

Query: 208 KAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL--------GL 256
           + +  Y   Y     D++  I     +G+      P   +   + L++Y          +
Sbjct: 208 QCLKRYLKKYHPKYNDMDALIFYSKSKGVYA----PMSAENVNKMLKKYALIAHETCEDV 263

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           PL+  AH  RH+ A+H L NG ++  I  +LGH  + TT  Y ++ ++     +  + ++
Sbjct: 264 PLNLHAHQFRHAKASHWLENGMNIAQISYLLGHECIQTTMAYLDITTEQEEKALETLENE 323

Query: 317 THPSITQKDKKN 328
           +  ++ +K K N
Sbjct: 324 SQKNMAKKWKNN 335


>gi|182418976|ref|ZP_02950232.1| tyrosine recombinase XerC [Clostridium butyricum 5521]
 gi|237668918|ref|ZP_04528902.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182377259|gb|EDT74827.1| tyrosine recombinase XerC [Clostridium butyricum 5521]
 gi|237657266|gb|EEP54822.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 334

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 146/302 (48%), Gaps = 38/302 (12%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +LQ  ++E   S+ TL +Y    R+F  F+          + +  ++  +IR +++   T
Sbjct: 61  YLQVRKLE-NYSQATLSNYMYTLRKFASFIN---------KPVGTITKNDIRYYMAINFT 110

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   ++   ++  K+F ++L++ ++  ++     R+L ++  LP+ L +      ++ 
Sbjct: 111 E-LKPSTVNNKIACFKAFFQWLEQEEMIPKNP---ARSLDETR-LPKRLRKSLTAEELER 165

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           V +        +D R+ A++  L   G R+SE +S   +++  + +TL++ GKGDK R V
Sbjct: 166 VRIAC------VDNRDRALVEFLVATGCRVSEVVSCNIKDLDLNDNTLKVIGKGDKERTV 219

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR------QLRRYL 254
                 +  I +Y +    D   + +  LF   +  P N  + +R I        +R  L
Sbjct: 220 CFTDKAKLYIRKYIEE---DRQKDNEDALFVSTKF-PYN-RISRRSIEVAISKIGIRANL 274

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G PL    H LRH+ AT  L +G D+  IQS+LGH   STTQIY    ++N  D +   Y
Sbjct: 275 GKPL--FPHLLRHTMATLSLQSGADITIIQSLLGHTTPSTTQIY----AENSLDNLKHEY 328

Query: 315 DQ 316
            Q
Sbjct: 329 KQ 330


>gi|253583755|ref|ZP_04860953.1| integrase/recombinase [Fusobacterium varium ATCC 27725]
 gi|251834327|gb|EES62890.1| integrase/recombinase [Fusobacterium varium ATCC 27725]
          Length = 294

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 121/272 (44%), Gaps = 19/272 (6%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T++S + D  Q    L+ Y +    I+ I +++   +R FI + +  ++G RS+ R LS 
Sbjct: 25  TIKSLKKDLSQ----LSEYLKNIEKIEDISKITPVMLRGFIIELQKNEVGKRSINRKLSS 80

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           ++SF KYL K      +N++    ++  NS      +   LTL +   ++   E   ID 
Sbjct: 81  LRSFFKYLIK------NNLIKNNPIEIINSPSFEAEKPDILTLEE---INKLREVINIDN 131

Query: 155 ----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
               R+  IL LLY  G+  +E L +  Q    D  TL +   G   R V      R+  
Sbjct: 132 TNGLRDRLILELLYSSGITSTEMLGIGEQVFDLDNRTLLVSN-GKTNRTVFFSQRTREYF 190

Query: 211 LEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
             Y +              LF    G  L+    +R + +     G+    + ++ RH+F
Sbjct: 191 KRYIEAKKEKYKEKYNSSILFVNGSGNRLSDRSLRRIVDRYAAKAGITREISPYSFRHTF 250

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           A HLL+ G  L  +Q ++GH  + +T+IY  +
Sbjct: 251 AVHLLAKGMGLNFLQELMGHVTIESTKIYQEI 282


>gi|229070581|ref|ZP_04203819.1| Integrase [Bacillus cereus F65185]
 gi|228712486|gb|EEL64423.1| Integrase [Bacillus cereus F65185]
          Length = 361

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 137/332 (41%), Gaps = 45/332 (13%)

Query: 16  KERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL-----AFYTEEKIT------IQT 62
           K +  W  ++  E++  LS  TL +Y  +  +FL +L     A    + +T      I T
Sbjct: 17  KSKMPWYIIEYAEMKTALSPATLYAYITEFEKFLKWLISNRLAVENGKVVTNICDVPITT 76

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +  L   E R F    + + I  R++ R+ S +KS  KYL +     +      RN+ + 
Sbjct: 77  LENLPLNEARTFQRYLQGEGIETRAINRTFSALKSLFKYLAQNTENEQGENYISRNVMEK 136

Query: 123 NSLPRA---------------LNEKQALTLVDNVLLHTSHETKWID-----------ARN 156
             L +                 NEK  +  +  +        K I             R+
Sbjct: 137 IELHKEKVDAAARADDVANMIFNEKDDVAFLQFLANDYGEMLKDISPKKYSFFQRDKERD 196

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
            AI+ L+ G GLR+SE  SLT  +I   Q  +++  KG+K   V    S  + I EY  +
Sbjct: 197 IAIISLILGTGLRVSEVASLTISSINFRQGKVKVTRKGNKRSSVLATRSCLEDIQEYIRV 256

Query: 217 CPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQL--RRYLGLPLSTTAHTLRHSFATH 272
            P   N   +  L      +GK     V  R I++L  +         + H LRH++AT+
Sbjct: 257 RPSKYNCPQDEDLLFVTNYKGKYTQLTV--RAIQKLCDKYSSAFDEKRSPHKLRHTYATN 314

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
                 DL  ++  LGH  +  T IYTN+N+K
Sbjct: 315 HYKENKDLVLLRDQLGHTSVEVTSIYTNINNK 346


>gi|325997549|gb|ADZ49757.1| XERCD family protein/integrase/recombinase [Helicobacter pylori
           2017]
          Length = 363

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 94/194 (48%), Gaps = 14/194 (7%)

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           N    N LP  LN ++    +D++       +  + ARN  ++ ++   G+R +EAL L 
Sbjct: 165 NQSAGNKLPTHLNNEELEKFLDSI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 222

Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            ++   +    T+ I+GKGDK R V L    + S+ K  L   +L P   +L     LF 
Sbjct: 223 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLTERELYPVKNDL-----LFC 277

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +G  L      + + ++  + GL      AH LRHSFAT L     DL  +Q  LGH 
Sbjct: 278 NQKGMALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 337

Query: 291 RLSTTQIYTNVNSK 304
            L+T++IYT+ + +
Sbjct: 338 SLNTSRIYTHFDKE 351


>gi|91786614|ref|YP_547566.1| phage integrase [Polaromonas sp. JS666]
 gi|91695839|gb|ABE42668.1| phage integrase [Polaromonas sp. JS666]
          Length = 414

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 126/294 (42%), Gaps = 36/294 (12%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLA--FYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++++ ERGLS +T+ +     R FL +LA      E  T+         ++ AF+S R  
Sbjct: 127 RHMQRERGLSPITINNRCWHVRAFLTWLAEQHRGAEDATLH--------QVDAFLSMRGV 178

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL--- 137
           Q     S+  + + ++SF  ++       E  +  +            L +++AL +   
Sbjct: 179 QGWCRASIATAATALRSFYAHMTATGRCAEGFVAGIEGPP--------LFKQEALAVGPC 230

Query: 138 VDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            D+V  L+ ++   +  D R+  IL LL   GLR  E ++LT  +I  ++  L +     
Sbjct: 231 WDDVQRLIASTDTDQPRDIRDRVILMLLAIYGLRRGEVVALTLDDIDWERDILHVARPKQ 290

Query: 196 KIR-IVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + +   PL   V  AIL Y            L L ++ PL       PL P      +  
Sbjct: 291 RCKHDYPLTTEVGNAILRYVREVRPRCASRRLFLTLKAPLV------PLAPNGLHHAVAS 344

Query: 250 LRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               LG+    T  H LRH+ ATHL++ G  L+ I   LGH   S T+ Y  V+
Sbjct: 345 RLEALGIRCPRTGPHALRHACATHLVAEGLSLKQIGDHLGHRSASATRTYAKVD 398


>gi|1403511|emb|CAA67039.1| integrase [Pseudomonas aeruginosa]
          Length = 336

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 127/310 (40%), Gaps = 58/310 (18%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L P++R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPTLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YTNVNSKNGG 307
           YT+V    G 
Sbjct: 312 YTHVLKVGGA 321


>gi|325103320|ref|YP_004272974.1| integrase family protein [Pedobacter saltans DSM 12145]
 gi|324972168|gb|ADY51152.1| integrase family protein [Pedobacter saltans DSM 12145]
          Length = 279

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 134/276 (48%), Gaps = 31/276 (11%)

Query: 33  KLTLQSYECDT-RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           KL +Q Y  +T R ++ +   + +      +++ +    I  FI+++   +    S ++ 
Sbjct: 13  KLVIQRYASNTIRSYMDYAGLFLKYVDKFASLKDVPIAIIETFINEKVENENISASYQKG 72

Query: 92  LSG-IKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQALTLVDNVLLHTSHET 149
           L G IK   + +   KI+     L+    K+S S LP+  ++++   L+D+         
Sbjct: 73  LVGAIKKLYELILDEKIS-----LDYLYPKRSFSKLPKFFSKEEVRKLLDSTE------- 120

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRK 208
              + ++ A+L  +Y CGLR++E L+L   +I      +RI Q KG+K RIV L   +  
Sbjct: 121 ---NLKHKAMLMTIYSCGLRLNELLNLRISDIRSSDKIIRINQSKGNKDRIVSLPDKLLT 177

Query: 209 AILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            + +YY          +  P   LF G +    +    Q  +++      +    T H+L
Sbjct: 178 ILRDYY---------QVYKPSHYLFEGEKRNRYSERSVQLVLKKALAKAKIKTEGTVHSL 228

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           RHS+ATHL+ +G D+R +Q +LGH  + TT IYT++
Sbjct: 229 RHSYATHLIQSGIDVRIVQELLGHENIKTTMIYTHI 264


>gi|238059127|ref|ZP_04603836.1| integrase [Micromonospora sp. ATCC 39149]
 gi|237880938|gb|EEP69766.1| integrase [Micromonospora sp. ATCC 39149]
          Length = 333

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 126/282 (44%), Gaps = 20/282 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT-EIRAFISK 77
           + WL+N    R LS+ T  +Y  D   +L +      + +    +   +Y  E+ A  + 
Sbjct: 28  EAWLRN----RRLSEHTRDAYRRDVAGWLAWCRARQLDPLRANFLDVNAYGRELEATPAA 83

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN---LKKSNSLPRALNEKQA 134
           R  + +   ++ R LS + S+  +L K +   E+N +   +   + + +S    L  ++ 
Sbjct: 84  RSGRPLTPATVARKLSALSSWYDFLVKLR-AIEANPVTAADRPRVDRDHSSTVGLTPQE- 141

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQG 192
              VD +L     E+    ARN A + LL   GLR+ E +SL   ++  ++   ++R  G
Sbjct: 142 ---VDALLAAAQAESGPTAARNRAAVALLADLGLRVGELVSLDLADLGAERGHRSVRFVG 198

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QL--PLFRGIRGKPLNPGVFQRYIRQ 249
           KG K R   L PS   A+  Y         +   QL  PL     G  L+     R +R+
Sbjct: 199 KGGKPRRRALTPSTAYAVDAYLAERAAAQGVGTHQLTGPLLVTATGARLDRHSVFRLVRR 258

Query: 250 LRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           L R  G+P     + H+LRH+FAT   + G  L  +Q  +GH
Sbjct: 259 LARTAGIPAWAKLSPHSLRHAFATTARAEGVPLEDVQDAMGH 300


>gi|261883696|ref|ZP_06007735.1| phage integrase family site specific recombinase [Campylobacter
           fetus subsp. venerealis str. Azul-94]
          Length = 171

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 79/142 (55%), Gaps = 9/142 (6%)

Query: 166 CGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN- 222
            G+R+SEAL+L  ++I +D     LRI+GKG+K RIV     ++K +++ + L    +N 
Sbjct: 19  TGIRVSEALNLKRKDISEDGDLYILRIRGKGNKYRIVM----IKKHLIDEH-LQNIAINY 73

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLR 281
           +N +  LF    G+ L      R + Q+    G+      AH LRH+FAT L     DL 
Sbjct: 74  INSEGYLFVNRNGEKLTQAYVSRIVEQILFGAGIRKEKNGAHMLRHTFATMLYKKQKDLV 133

Query: 282 SIQSILGHFRLSTTQIYTNVNS 303
            +Q  LGH  L+T++IYT+ +S
Sbjct: 134 LVQEALGHASLNTSRIYTHFDS 155


>gi|313144154|ref|ZP_07806347.1| integrase/recombinase XerD [Helicobacter cinaedi CCUG 18818]
 gi|313129185|gb|EFR46802.1| integrase/recombinase XerD [Helicobacter cinaedi CCUG 18818]
          Length = 354

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 96/197 (48%), Gaps = 24/197 (12%)

Query: 120 KKSNSLPRALNEKQA---LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           K    LP  LN+ +    L  +D   L      + + ARN  I+ L+   G+R+SEAL+L
Sbjct: 120 KSGQKLPAYLNQDELERFLQAIDEAEL-----GEKVAARNKLIIKLIVYTGIRVSEALNL 174

Query: 177 TPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-----DLCPF-DLNLNIQLP 228
             ++I    D   ++I+GKG+K R+  +  S  + +L+ +        P  DL       
Sbjct: 175 RRKDIYPHLDCYIIQIRGKGNKPRVAMIRQSHIQNLLDVWLTQRLSFAPLHDL------- 227

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           LF   +GK L      + + ++    G+      AH LRHSFAT L     DL  +Q  L
Sbjct: 228 LFCNTKGKALTQSYIYQNVEKILAQSGIRKEKNGAHMLRHSFATLLYQQKHDLVMVQEAL 287

Query: 288 GHFRLSTTQIYTNVNSK 304
           GH  L+T++IYT+ +SK
Sbjct: 288 GHADLNTSRIYTHFDSK 304


>gi|7339576|emb|CAB82887.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 334

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 125/310 (40%), Gaps = 58/310 (18%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVNWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL----LPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R + L     PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPEAVAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YTNVNSKNGG 307
           YT+V    G 
Sbjct: 312 YTHVLKVGGA 321


>gi|241992584|gb|ACS73643.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 82/177 (46%), Gaps = 37/177 (20%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207
           LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R         
Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198

Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                                  +A   +     F  + +   P    +R   +    FQ
Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT V
Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTQV 315


>gi|257093399|ref|YP_003167040.1| integrase family protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257045923|gb|ACV35111.1| integrase family protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 305

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 16/157 (10%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYD 215
             + LY  GLR+ E L LT  +I  D +  R+     KG+K R+VPL  +  + +  ++ 
Sbjct: 132 FFFTLYSLGLRLGEGLRLTVGDI--DGACERVHIRDAKGNKDRLVPLPTATHQLLRRFWQ 189

Query: 216 -------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
                  L P   N +  L   R  R  PL+ G  Q+ +R +    G+    + H+LRH+
Sbjct: 190 RHRNPVLLFP---NRHGGLAGARAAR-TPLDRGGVQKALRAVVESCGVKKHISPHSLRHA 245

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +ATHL+  G +L  +Q ILGH  + TT  YT++  ++
Sbjct: 246 YATHLVEAGVELTEVQDILGHHSILTTVRYTHLTDRS 282


>gi|319655065|ref|ZP_08009133.1| hypothetical protein HMPREF1013_05756 [Bacillus sp. 2_A_57_CT2]
 gi|317393243|gb|EFV74013.1| hypothetical protein HMPREF1013_05756 [Bacillus sp. 2_A_57_CT2]
          Length = 279

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 134/275 (48%), Gaps = 31/275 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +G S  TL+ Y+    Q  + + ++ + KIT      ++   I+ ++ +   + +   SL
Sbjct: 17  QGYSSQTLKVYKV---QMSLLIKYFGDIKIT-----DITTESIKLYLGEVAAE-LKASSL 67

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
              +  IKS  K+ ++ K  + + +  ++  K  + +P+ L E++        LL  + +
Sbjct: 68  CHRIRFIKSLFKWAQEEKYVSVNPVSTIKEPKPESRIPKFLTEEEI------ELLREACK 121

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVR 207
           T +      A+   +Y  G RI E + L   +I M +QS + + GKG K R V    + R
Sbjct: 122 TTF----EKALFEFMYSTGCRIGEVVKLDRHSINMAEQSVI-VFGKGKKEREVYF--NTR 174

Query: 208 KAI-LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ-RY-IRQLRRYLGLPLSTTAHT 264
            +I L+ Y     +   + Q  LF  IR  P    + Q RY I+Q+ +  G+      H 
Sbjct: 175 CSIWLKRY----LEERYDDQQALFVTIRA-PHRMSIAQMRYVIKQISKRAGINKCIHPHQ 229

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           LRHS+AT L++NG  L  IQ+++GH +  TT++Y 
Sbjct: 230 LRHSYATTLINNGAPLEVIQNLMGHEKSETTRVYA 264


>gi|38637707|ref|NP_942681.1| Orf2/integrase/recombinase fusion protein [Ralstonia eutropha H16]
 gi|32527045|gb|AAP85795.1| Orf2/integrase/recombinase fusion protein [Ralstonia eutropha H16]
          Length = 875

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 136/299 (45%), Gaps = 34/299 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ---LSYTEIRAFI 75
           Q +++ L   R LSK T+ +Y    R+FL     + + +I +  +R    +++ + +A  
Sbjct: 584 QAYVEYLHEARALSKATIVNYVPFIREFL--EDCFGDGRIRLSRLRAGDVVNFVQCQAL- 640

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT---ESNILNMRNLKKSNSLPRALNEK 132
                 ++  +  K   + ++SFL+Y   R   T    + +  + N     S+PR +  +
Sbjct: 641 ------RLHLKRAKLMTTALRSFLRYACYRGDMTLDLAAAVPVVANWSM-QSIPRGIPPE 693

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q   L+ ++   T+     +  R+ AI+ LL   GLR  E   L   +I  +   L ++G
Sbjct: 694 QIQQLLVSINRRTA-----VGRRDYAIILLLARLGLRSGEVAFLELDDIDWNTGVLSVRG 748

Query: 193 KGDKIRIVPLLPSVRKAILEYY-DLCPFDLN----LNIQLPL--FRGIRGKPLNPGVFQR 245
           K  +   +PL   V KAI  Y  D  P   +    L  + P+  FRG  G     G   R
Sbjct: 749 KSGQRNGLPLPADVGKAIAAYLRDGRPQSTSRRVFLRAKAPVIGFRGASGV----GSIVR 804

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +  Q R  +  P +T AH  RH  A  +LS+G  L  I  +LGH    TT+IYT V+ K
Sbjct: 805 HSLQ-RAGIDAP-TTGAHQFRHGLACQMLSHGASLSEIGELLGHHHPQTTKIYTKVDIK 861


>gi|294506890|ref|YP_003570948.1| Integrase [Salinibacter ruber M8]
 gi|294343218|emb|CBH23996.1| Integrase [Salinibacter ruber M8]
          Length = 261

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 81/190 (42%), Gaps = 37/190 (19%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV--------PLLPSV 206
           N  I +LLYG GLR+SEAL L  + +    S L ++ GKG K R          PL   +
Sbjct: 59  NRLIAHLLYGSGLRLSEALRLRVKELDVGTSRLHVRDGKGRKDRTTVLPERLHGPLRRHL 118

Query: 207 RKAILEYYDLCP----------------------------FDLNLNIQLPLFRGIRGKPL 238
           +    ++   C                             F      + P    +R    
Sbjct: 119 KTVKAQHEADCADGVGGVYLPDAIAEKHPNAKTEWRWQYVFPSTTLSEDPRSGAVRRHHR 178

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +    QR ++       +    T HTLRHSFATHLL +G D+R+IQ +LGH +L TT  Y
Sbjct: 179 SDSAVQRAVKNAADAADIEKRATCHTLRHSFATHLLQDGTDVRTIQKLLGHEQLRTTMQY 238

Query: 299 TNVNSKNGGD 308
            +V  ++G D
Sbjct: 239 IHVLEQSGAD 248


>gi|241992522|gb|ACS73599.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 126/304 (41%), Gaps = 58/304 (19%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKG--DKIRIVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG  D+  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSRDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YTNV 301
           YT+V
Sbjct: 312 YTHV 315


>gi|283957150|ref|ZP_06374614.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|283791326|gb|EFC30131.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 1336]
          Length = 354

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 134/274 (48%), Gaps = 35/274 (12%)

Query: 45  QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK 104
           ++L F   Y+ ++I  + I      E+ A I    T  + D S K     + +F  +L K
Sbjct: 85  EYLNFYKLYSLKQIDEELI-----VEVLASI----TGALSDASKKNYRIAVINFFDFLDK 135

Query: 105 RKITTE-SNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
           +    E ++I N+ NLK        K   LP  ++E++    +D +    + + K    R
Sbjct: 136 QNEEDEKAHIFNI-NLKNWAGIAGSKGVKLPEFMSEEELKKFLDAI---ENADFKNNTIR 191

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
           N  I+ ++   G+R+SEA+++   +I +  D   +RI+ KG+K R+V     ++K ++  
Sbjct: 192 NKLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVV----MIKKELI-- 245

Query: 214 YDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSF 269
           YDL   ++++N       LF   +G PL      R + QL    G+      AH LRH+F
Sbjct: 246 YDLLK-NVSINYMSKDALLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLRHTF 304

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           AT L     DL  +Q  LGH  L+T++IYT+ ++
Sbjct: 305 ATLLYKKQKDLILVQEALGHASLNTSRIYTHFDN 338


>gi|4210823|emb|CAA11470.1| intI1 [Pseudomonas aeruginosa]
          Length = 337

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 127/310 (40%), Gaps = 58/310 (18%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L P++R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPTLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YTNVNSKNGG 307
           YT+V    G 
Sbjct: 312 YTHVLKVGGA 321


>gi|256377530|ref|YP_003101190.1| integrase family protein [Actinosynnema mirum DSM 43827]
 gi|255921833|gb|ACU37344.1| integrase family protein [Actinosynnema mirum DSM 43827]
          Length = 324

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 78/164 (47%), Gaps = 17/164 (10%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           R+  +L L    GLR  E  +LT  +++    +  L + GKG++ R VP+ P++ + + E
Sbjct: 143 RDVLVLALGLVAGLRSVEMRTLTLASVVGRSGERRLHVLGKGNRDRSVPIEPAMERVVDE 202

Query: 213 YYDLC----P---FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL----PLSTT 261
           Y   C    P   FD        L R   G+P+  G  +  +R   R+ GL    P    
Sbjct: 203 YLASCRKRFPQGRFDRGSA----LLRDRHGEPIGRGGLEYLVRSCFRWAGLHDRVPSGAN 258

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            H LRH+FAT L  +G     I ++LGH  L+T+Q Y    ++ 
Sbjct: 259 LHALRHTFATRLAEDGATASEIMALLGHASLATSQNYIEATARE 302


>gi|134287704|ref|YP_001109870.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134132354|gb|ABO60089.1| phage integrase family protein [Burkholderia vietnamiensis G4]
          Length = 291

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 104/225 (46%), Gaps = 28/225 (12%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           SL  +++G+K F      R       +  M+ ++    LP  L+ ++   L+     +  
Sbjct: 71  SLNAAIAGLKFFFDVTLDRA----ELMAKMQPVRVPQRLPVVLSREEVGRLI-AASGNLK 125

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205
           H+T          L L YG GLR SE ++L   +I   + TLR+ QGKG K R   L P 
Sbjct: 126 HQTA---------LSLAYGTGLRASEVVALKVCDIDSQRMTLRVEQGKGRKDRYAMLSPV 176

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG-------LPL 258
           + + +  ++ +      +     LF G     LNP +     RQL R +        +  
Sbjct: 177 LLERLRVWWRVARAQGKMLDGGWLFPG-----LNP-IESLSTRQLNRAIHAAAAEAKIDK 230

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             + HTLRH FATHLL    D+R IQ +LGH +L TT +YT V +
Sbjct: 231 RVSMHTLRHCFATHLLEQKVDIRVIQVLLGHKQLDTTALYTQVAT 275


>gi|116619765|ref|YP_821921.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222927|gb|ABJ81636.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 332

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 128/295 (43%), Gaps = 32/295 (10%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI---SKRRTQ 81
           L  +R  S  T+ SY    R  L F      +  +   +  L  + + AF+     RR  
Sbjct: 19  LMAQRKASPHTIASYRDTFRLLLQFAQMRLRKAPSQLGLEDLDASLVGAFLEDLGNRRHN 78

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD-- 139
               R+L+  L+ I+SF +Y    +    S I+     ++  ++P   N++Q  TLV   
Sbjct: 79  GARSRNLR--LTAIRSFFRY-ASLEAPAHSGII-----QRVLAIP---NQRQRRTLVGFL 127

Query: 140 -----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGK 193
                + LL   + T+W+  R+ A L      GLR+SE   L  +++ +   + +R +GK
Sbjct: 128 TRPEIDALLAAPNRTQWLGRRDHAFLLTAVQTGLRLSEMTGLRHEDVSLGAGAHVRCRGK 187

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ----RYIRQ 249
           G K R  PL      A+L+ +     +        LF   RG PL+    Q    R++ +
Sbjct: 188 GRKERCTPLAKPT-AAVLKAWIR---EQGRGDSKTLFPSTRGGPLSADGVQHLLARHVAK 243

Query: 250 LRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            R++         + H LRH+ A  LL  G D   I   LGH  + TTQIY + +
Sbjct: 244 ARKHCASLRKKRVSPHVLRHAAAMELLQAGVDRAVIALWLGHESVETTQIYLDAD 298


>gi|89147430|gb|ABD62575.1| integrase [uncultured bacterium]
          Length = 163

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 45/69 (65%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R     P   QR +R   R+ G+    T HTLRHSFATHLL +G D+R++Q +LGH  +
Sbjct: 94  VRRHHAGPESIQRALRDALRHAGIAKHATPHTLRHSFATHLLDDGYDIRTVQELLGHKDV 153

Query: 293 STTQIYTNV 301
           STT IYT+V
Sbjct: 154 STTMIYTHV 162


>gi|27363605|ref|NP_759133.1| site-specific recombinase XerD [Vibrio vulnificus CMCP6]
 gi|27359721|gb|AAO08660.1| Site-specific recombinase XerD [Vibrio vulnificus CMCP6]
          Length = 348

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 116/257 (45%), Gaps = 34/257 (13%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S K +++ I+ F  +L KR++  ++   ++   K    LPR +  K A       LL   
Sbjct: 81  SRKVAVAAIRGFYSFLAKRRLVAKNPASDLVYPKIGRRLPRFMGLKSA-----EALLFQP 135

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM------DDQSTLRIQGKGDKIRIV 200
             T     R+SA+L LL GCG R++    L    ++       ++  +R   KG++ R+V
Sbjct: 136 ELTSLSGVRDSAMLSLLIGCGFRVAGLCGLNESQLIWYQYGEVERLAIRTMEKGERERLV 195

Query: 201 PLLPSVR---KAILEYYDLCPFD-----------LNL-NIQLPLFRGIRG--KPLNPGVF 243
           P+        +A L + DL   D           +NL N  +P +   RG  + L+    
Sbjct: 196 PVPLEAMLLVQAYLGHPDLKHVDRLLDDGDQVLFVNLRNRHVPEWEH-RGELRRLSTRAV 254

Query: 244 QRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            R I++     G+P     AH LRH F T L  +      IQ+++GH    T++IYT+++
Sbjct: 255 DRMIKKYAIAAGVPEDQAHAHALRHLFGTELAESDSSTLQIQALMGHADPKTSEIYTHIS 314

Query: 303 SKNGGDWMMEIYDQTHP 319
            +     M  + D+ +P
Sbjct: 315 MRK----MTNVLDKGNP 327


>gi|306519780|ref|ZP_07406127.1| putative tyrosine recombinase [Clostridium difficile QCD-32g58]
          Length = 290

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 130/284 (45%), Gaps = 15/284 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE--IRAFIS 76
           + ++  ++ ++ LS+ T+ SY  D ++++        E I  ++I+ +   E  I +++ 
Sbjct: 5   EGYIDYIKDKKKLSENTVASYFMDIKKYM--------EYINQKSIKLVDIVENDIISYLI 56

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           K     +   ++ R +S IKSF  YL    I T +   +++  K        L E++   
Sbjct: 57  KLEKDNVSIATIARMISSIKSFHDYLFLNHICTNNPAKDIKKPKIKKENINILTEEEIER 116

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L++   L T    K I  R+ AI  +LYG G+++SE + +  ++I  D   +        
Sbjct: 117 LLNFPKLTTP---KLI--RDKAIFEVLYGTGIKVSELVEMNIEDIDLDIDYIYCNSCCKN 171

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R++PL    +  + +Y       + +  +  LF    G+        + I++      +
Sbjct: 172 QRVIPLCDITKLYLEKYLKEARPKMAVEGEKSLFVSSLGQRFTRQGLWKVIKKYSNLANI 231

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             +     LRHSFA HLL+ G ++  +  ILG+  LS+ Q+Y N
Sbjct: 232 DKNINPTMLRHSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLN 275


>gi|60256918|gb|AAX14941.1| integrase [Xanthomonas campestris pv. oryzae]
          Length = 315

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 85/178 (47%), Gaps = 39/178 (21%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD----- 215
           LLYG G+R+ E L L  +++   +  + ++ GKG K R VP   S+R  +++  +     
Sbjct: 131 LLYGSGMRLLECLRLRIKDVDVVRGEIVVRDGKGGKDRRVPPPHSLRGELMQQRERALLL 190

Query: 216 ------------LCPFDL-----NLNIQLP---LFRGIRGKPLNP------------GVF 243
                         P  L     N N++     LF   R + ++P             V 
Sbjct: 191 HAADLAEGAGRVFLPHALARKYPNANVEPGWQYLFLAAR-RSVDPRSGRVGRHHVSEEVL 249

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           QR ++  RR  G+    T HTLRHSFATHLL  G D+ ++Q +LGH  ++T QIY +V
Sbjct: 250 QRAVQSARRQAGIAKPATCHTLRHSFATHLLEAGHDIATVQELLGHKDVTTKQIYAHV 307


>gi|167758606|ref|ZP_02430733.1| hypothetical protein CLOSCI_00946 [Clostridium scindens ATCC 35704]
 gi|167663802|gb|EDS07932.1| hypothetical protein CLOSCI_00946 [Clostridium scindens ATCC 35704]
          Length = 346

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 132/290 (45%), Gaps = 17/290 (5%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           +R  S  T+++Y     QFL + A      +   T   ++Y  + A++     +K    +
Sbjct: 24  QRKASGNTVKAYRTALNQFLKYTAGRKNISVLSVTFGMVTYKTVNAYLDWLSVEKNATPA 83

Query: 88  LKRS-LSGIKSFLKY---LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
            + + L+ +++F+ Y    +   I+  S +  +  ++K+    +   +  +   V  +L 
Sbjct: 84  TRNNRLAALRAFVSYAAACRPEYISVASELTTI-GIQKNERFAKV--DYMSEEAVKALLA 140

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPL 202
               +T+ I  R+  ++  LY  G RI E L +   +I +D   T+ + GKG K R VPL
Sbjct: 141 EPDTKTE-IGVRDQFLMIFLYDTGARIQEVLDVKICDIKVDRTPTVTLHGKGKKTRSVPL 199

Query: 203 LPSVRKAILEYYDLC-PFDLNLNIQLPLF---RGIRGKPLNPGV---FQRYIRQLR-RYL 254
           +    K +  Y  +  P +  L+ +   +   +G R    +  V    Q+Y    R +  
Sbjct: 200 MKDTVKHLQNYMKVFHPGETWLSSEWLFYVERKGNRNAMCDDTVRLRIQKYAASAREKCP 259

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            +PL+   H  RH+ A HL  +G DL  I   LGH +L TT IY + +++
Sbjct: 260 DVPLNVHPHLWRHTRAMHLYQHGMDLTLISQWLGHKQLETTLIYAHADTE 309


>gi|13445488|gb|AAK26251.1|AF263519_1 integrase INTI1 [Pseudomonas aeruginosa]
          Length = 337

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 92/200 (46%), Gaps = 38/200 (19%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207
           LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R         
Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198

Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                                  +A   +     F  + +   P    +R   +    FQ
Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V  K
Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV-LK 317

Query: 305 NGGDWMMEIYDQTHPSITQK 324
            GG  +    D   P  +++
Sbjct: 318 VGGAGVRSPLDALPPLTSER 337


>gi|89147428|gb|ABD62574.1| integrase [uncultured bacterium]
          Length = 163

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 45/69 (65%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R     P   QR +R   R+ G+    T HTLRHSFATHLL +G D+R++Q +LGH  +
Sbjct: 94  VRRHHAGPESVQRALRDALRHAGIAKHATPHTLRHSFATHLLDDGYDIRTVQELLGHKDV 153

Query: 293 STTQIYTNV 301
           STT IYT+V
Sbjct: 154 STTMIYTHV 162


>gi|237795760|ref|YP_002863312.1| phage integrase [Clostridium botulinum Ba4 str. 657]
 gi|229261691|gb|ACQ52724.1| phage integrase [Clostridium botulinum Ba4 str. 657]
          Length = 330

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 148/303 (48%), Gaps = 27/303 (8%)

Query: 6   LPE---IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
           LPE   +V+ ++ ++ Q +L + +++ GLS  TL++Y+ +     IF     +   TI T
Sbjct: 43  LPEETGLVTSDIEEKLQIYLASKKLD-GLSLKTLKNYQYN---LAIFADHLRKPLGTITT 98

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +      ++R F++  R + +   S+   +S +KSF  +L   +   ++    ++  K+ 
Sbjct: 99  M------DLRMFLA-VRCKNMKATSVNGQISILKSFFGWLHDEEYIPKNPAKKLKQTKEP 151

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             L  A+ E++        LL  + +T     R  A++  L   G R+SE + +   ++ 
Sbjct: 152 KRLRHAMTEEEV------ELLRQASKTD----REKALVEFLISTGCRLSEVVGVNKDDLN 201

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
             + +L + GKG+K R V    +  K +L+ Y L   D N  + +   R   G+ L    
Sbjct: 202 WHEMSLNVIGKGNKERKV-YFSTKAKILLKKYLLTRKDDNEALFVTSKRP-HGR-LGGRS 258

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            QR I+++    GL  S   H  RHSFAT  +++G  L  +Q I+GH   STTQ+Y  ++
Sbjct: 259 VQREIKKIANRAGLNKSVYPHLFRHSFATCKINSGMPLPVLQHIMGHESPSTTQVYAQLS 318

Query: 303 SKN 305
            +N
Sbjct: 319 EEN 321


>gi|229015245|ref|ZP_04172280.1| hypothetical protein bmyco0001_55910 [Bacillus mycoides DSM 2048]
 gi|228746047|gb|EEL96015.1| hypothetical protein bmyco0001_55910 [Bacillus mycoides DSM 2048]
          Length = 280

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 126/288 (43%), Gaps = 28/288 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G S LTL++Y     Q+ + L ++ +  ++  T  +L    I A       + +   SL 
Sbjct: 18  GYSPLTLKTY---CFQYNLLLRYFGDINMSEFTTEKLKGYLIEA------GEHLKPSSLG 68

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             +  IKS  ++        ++    ++  K    +P+ L+E +   L +    H S E 
Sbjct: 69  HRVRCIKSLFRWTHDEGFILKNPAAKLKEPKLGKKIPKFLSELEIEHLREAC--HNSME- 125

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
                  +A+   LY  G RI E + L   +I    +++ + GKGDK R V         
Sbjct: 126 -------NALFEFLYSTGCRIGEVVKLNRVDINFSTNSVIVHGKGDKEREVYFNTRCTIW 178

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKP---LNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           +  Y D        + + P       +P   ++    +  I+++     +  S   H LR
Sbjct: 179 LKRYLD------ERDDEEPCLFITERRPKRRMSIDNLRFIIKRISNRARIKKSIHPHQLR 232

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           HS+ATH+++NG  L  IQS+LGH +  TT+IY  ++ K   D+ ++ +
Sbjct: 233 HSYATHMINNGAPLEVIQSLLGHEKSETTRIYAQLSGKLRHDFYIKYF 280


>gi|257095506|ref|YP_003169147.1| integrase family protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257048030|gb|ACV37218.1| integrase family protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 282

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 126/292 (43%), Gaps = 37/292 (12%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+ER   + N    RG++    ++Y       L+ LA Y       ++   L   E++A+
Sbjct: 4   LRER---MSNAMCLRGMAARAQEAYI----DALVGLAKYYH-----RSPADLRVEEVQAY 51

Query: 75  ISKRRTQKIGDRSLK-RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +       I D+ L   S++      ++L +R +       ++   K    LP+ L+ ++
Sbjct: 52  L----LHLIRDKKLAYASVNQASCAFRFLYRRVLGRPEAGFDIPMAKVPQRLPQILSREE 107

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRI- 190
              L+D+              R   +L   Y  GLR+SE  +L   +I    D+  L++ 
Sbjct: 108 VARLIDSAR----------TLRGRTLLMTTYAAGLRVSEVCALQVGDIESAADRMCLKVR 157

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQ 249
           QGKG K R   L P +  A+  Y+       +   +L LF    G  P+     QR    
Sbjct: 158 QGKGGKDRYTLLSPHLLAALRTYWR------DTRPRLWLFPNRAGTGPMEIQTAQRIYYA 211

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            R   G+      H LRH+FATHLL  G DL SI  +LGH  LSTT  Y ++
Sbjct: 212 ARNAAGIAPEGGIHGLRHAFATHLLEAGVDLYSIGRLLGHGHLSTTSRYLHL 263


>gi|150377511|ref|YP_001314106.1| phage integrase family protein [Sinorhizobium medicae WSM419]
 gi|150032058|gb|ABR64173.1| phage integrase family protein [Sinorhizobium medicae WSM419]
          Length = 330

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 140/317 (44%), Gaps = 32/317 (10%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+  N P ++       ++ +   L  +   S+ T+  Y    R  + +      +  T 
Sbjct: 1   MKATNFPALI-------QRFFTDRLCTQMEASQHTIAGYRDTFRLLIRYAGSRCGKPPTK 53

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRS--LSGIKSFLKYLKKRKITTESNILNMRN 118
            TI  L    +  F+S   T + G+ +  R+  L+ I+SF +Y+    +T  + +L+ + 
Sbjct: 54  LTIEDLDADLVADFLSHVETTR-GNTARTRNARLAAIRSFFRYVA---MTDPTWLLHCQR 109

Query: 119 LKKSNSLPRALNEKQALTLVDN----VLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           +    S+P     K+++T +D      LL     T W+  R+ A+L L    GLR SE +
Sbjct: 110 IL---SMPSKRYVKRSVTFLDAQEIAALLVAPDRTTWVGRRDHALLLLALQTGLRASELI 166

Query: 175 SLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
           SL  +++ +   + +R  GKG K R  PL     K I  +          +   PLF  I
Sbjct: 167 SLRCKDVVLGAGAHIRCVGKGRKERSTPLRRDTAKLIQGW-----IGERRDSDSPLFPSI 221

Query: 234 RGKPLNPGVFQRYIRQ--LRRYLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           RG+ L+    +  +R+  L      P       T HTLRHS A  LL +G D   I   L
Sbjct: 222 RGERLSRDALEHLVRKHCLTASRTCPSLASKRVTPHTLRHSTAMELLHHGVDQSVIALWL 281

Query: 288 GHFRLSTTQIYTNVNSK 304
           GH  + TTQIY + + +
Sbjct: 282 GHESVETTQIYIHADMR 298


>gi|45766|emb|CAA33849.1| unnamed protein product [Plasmid R1033]
 gi|530804|gb|AAB59999.1| IntI1 integrase [Pseudomonas aeruginosa]
          Length = 337

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 127/310 (40%), Gaps = 58/310 (18%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVNWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L P++R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPTLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YTNVNSKNGG 307
           YT+V    G 
Sbjct: 312 YTHVLKVGGA 321


>gi|297539030|ref|YP_003674799.1| integron integrase [Methylotenera sp. 301]
 gi|297258377|gb|ADI30222.1| integron integrase [Methylotenera sp. 301]
          Length = 313

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 78/178 (43%), Gaps = 39/178 (21%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS----------VRKAI 210
           LLYG GLR+SE + L  ++I     TL ++ GKG K R   LLPS          V  A 
Sbjct: 123 LLYGAGLRVSECIGLRVKDIDFGAKTLTVRDGKGGKDRTT-LLPSQLIERLQKHLVMVAQ 181

Query: 211 LEYYDLCPFDLNLNIQLPLFRG-------------IRGKPLNP--------------GVF 243
           L   D+        +   L+R                 K L P                 
Sbjct: 182 LHSADIAKGGGYAAMPNALYRKYPAASRSIAWQFVFPSKVLRPWQNEFQLARWHMSDTTI 241

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           QR  +      G+    + HTLRHSFATHLLS G D+R+IQ +LGH  L TT IYT+V
Sbjct: 242 QRAFKSALNLAGVRKHASVHTLRHSFATHLLSAGTDIRTIQLLLGHRSLQTTMIYTHV 299


>gi|94310217|ref|YP_583427.1| phage integrase [Cupriavidus metallidurans CH34]
 gi|93354069|gb|ABF08158.1| tyrosine-based site-specific recombinase [Cupriavidus metallidurans
           CH34]
          Length = 331

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 136/321 (42%), Gaps = 43/321 (13%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE---- 56
           M   +LP +V       ++ + Q L  ++GLS  T+ SY  DT  F + LAF T+     
Sbjct: 1   MSAASLPALV-------QRFFTQRLLEQQGLSSHTVASYR-DT--FRLLLAFATKHIGRA 50

Query: 57  --KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK---ITTES 111
             K+ I+        E    +   R   +  R+ +  L+ + +F +++   +        
Sbjct: 51  PSKLRIEDFDVSLIEEFLQHLEHGRGNSVRTRNTR--LAAVHAFFRFVAVSEPALFLLCQ 108

Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
            IL + + +  +     L E +A  LV            WI  R+  +L +    GLR S
Sbjct: 109 RILAIPSKRCEHGPVEFLTESEAAALVG-----APDVRNWIGNRDRTLLLVAVQTGLRNS 163

Query: 172 EALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLP---SVRKAILEYYDLCPFDLNLNIQL 227
           E  +L  Q++ +   + +R  GKG K+R  PL P   +V K  L Y    P D       
Sbjct: 164 ELTALRRQDVALGTGAHVRCLGKGRKMRCTPLRPDVVAVLKQWLLYQPGEPGD------- 216

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLRHSFATHLLSNGGDLR 281
           P+F   RG  L+    Q+ + +      L        S T HTLRH+ A  L+ +G DL 
Sbjct: 217 PVFPSSRGGHLSADALQQLVSRNAETARLSCPSLKKKSITPHTLRHTAAMSLMHHGVDLT 276

Query: 282 SIQSILGHFRLSTTQIYTNVN 302
            I   LGH    TTQIY + +
Sbjct: 277 VIALWLGHESSETTQIYLHAD 297


>gi|300786599|ref|YP_003766890.1| phage integrase family protein [Amycolatopsis mediterranei U32]
 gi|299796113|gb|ADJ46488.1| phage integrase family protein [Amycolatopsis mediterranei U32]
          Length = 326

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 10/164 (6%)

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR--IQGKGDKIRIVPLLPSVRK 208
           W + R+  ++ L    GLR +E  +L+ ++++     LR  ++GKG + R +P+ P + +
Sbjct: 146 WPE-RDVLVIALGLVAGLRAAEMRALSARSLVGRAGELRLHVKGKGSRDRSIPVQPVLAE 204

Query: 209 AILEYYDLCPF---DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL----PLSTT 261
            I  Y + C     ++  +   PL     G+P+  G  +  ++   R  GL    P    
Sbjct: 205 LIERYRESCRVRFPNVRFSPGSPLLLDRAGEPIGRGALEYLVKSCYRGAGLHDRVPAGAN 264

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            H LRH+FAT L  +G     I ++LGH  L+T+Q Y     + 
Sbjct: 265 LHALRHTFATRLAEDGATASEIMALLGHASLATSQNYIEATGRE 308


>gi|297572206|ref|YP_003697980.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595]
 gi|296932553|gb|ADH93361.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595]
          Length = 260

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 99/210 (47%), Gaps = 22/210 (10%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
            + IK+   +L+  +  T++ +L ++  ++    PR +    +L ++++VL       + 
Sbjct: 54  FTHIKALFTWLEITRRRTDNPLLGLKAPRRPKYYPRPI----SLEVIEHVL------NQR 103

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           +  +   ++ L + CGLR+ E   +  Q+       L ++GKG K  I+P    V  A+ 
Sbjct: 104 LYRKTRCMILLAFNCGLRVGEICKVRGQDYDRQAGLLTVEGKGGKRSIIP----VNSALQ 159

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
            +++  P         P   G  G   +  V    +R  RRY    +   +H LRH+FAT
Sbjct: 160 PFFNTMPAH---GWWFPCRNG--GHVRSRSVGDTIVRTFRRY---EVHMVSHQLRHTFAT 211

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            LL+   DLR +Q ++ H  + TT +YT V
Sbjct: 212 ELLAADVDLRIVQLLMRHESIQTTALYTRV 241


>gi|87300841|ref|ZP_01083683.1| integron integrase [Synechococcus sp. WH 5701]
 gi|87284712|gb|EAQ76664.1| integron integrase [Synechococcus sp. WH 5701]
          Length = 278

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 87/188 (46%), Gaps = 39/188 (20%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS----- 205
           +D   + +  LLYG G+R+ EAL L   ++   +  L ++ GKG K R   LLP      
Sbjct: 70  LDGVEALVAGLLYGSGVRLIEALRLRVHDLDFSRHELMVRDGKGGKDRRT-LLPERLGAQ 128

Query: 206 VRKAILEYYDLCPFDLNLN---IQLP--LFR--------------------------GIR 234
           +R  + E   +   DL      + LP  L R                          G +
Sbjct: 129 LRGHLEEVRQVHRQDLAQGWGRVMLPHALGRKYPNAGVEWGWQWVFPQHQRWRDASSGQQ 188

Query: 235 GKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           G+  L+P + QR +R+     GL    T HT RHSFATHLL  G D+R+IQ +LGH  + 
Sbjct: 189 GRHHLDPSLIQRAVRRAVLAAGLTKPATCHTFRHSFATHLLERGQDIRTIQGLLGHSDVK 248

Query: 294 TTQIYTNV 301
           TT IYT V
Sbjct: 249 TTMIYTQV 256


>gi|156936639|ref|YP_001440553.1| hypothetical protein ESA_pESA3p05520 [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156534893|gb|ABU79717.1| hypothetical protein ESA_pESA3p05520 [Cronobacter sakazakii ATCC
           BAA-894]
          Length = 325

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 78/150 (52%), Gaps = 11/150 (7%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R++A+L ++ GCGLR SE + L   +I++    LR+ GKG+K R+  +  +V + +  + 
Sbjct: 164 RDAAMLAVMLGCGLRRSEVVGLDYASILEQDQALRVLGKGNKERLAFMPDTVWQRLRHWT 223

Query: 215 DLCPFDLNLNIQLPLFRGIRG------KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           D     +      PLF  IR       + L P      + + R   G+  +   H LR +
Sbjct: 224 D----SVRGEYPGPLFTRIRAGDDVTSERLTPQAVYHILNERRMQCGID-NCAPHDLRRT 278

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           FA+ +L NG DL +++  +GH  ++TTQ Y
Sbjct: 279 FASMMLDNGEDLITVRDAMGHASVTTTQKY 308


>gi|209526214|ref|ZP_03274744.1| integron integrase [Arthrospira maxima CS-328]
 gi|209493311|gb|EDZ93636.1| integron integrase [Arthrospira maxima CS-328]
          Length = 277

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 93/191 (48%), Gaps = 37/191 (19%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVP---LLP-- 204
           D   + ++ LLYG G+R++E L L  +++  D   + I   +GK D+I ++P   +LP  
Sbjct: 75  DDPEALVIRLLYGTGMRLTECLRLRVKDVDFDHGQILIRNSKGKKDRITMLPRSLILPLQ 134

Query: 205 --------SVRKAILEYYDLCPFDLNLNIQLP----------LFRG-----------IRG 235
                   +  + +L+ Y        L  + P          +F             +R 
Sbjct: 135 QHIARTKLAHDRELLDGYGEVELPDALARKYPNAQREWGWQYVFPAAHRSRDPRSGAVRR 194

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             L+    QR ++  ++   +    + HTLRHSFATHLL +G D+R++Q +LGH  + TT
Sbjct: 195 HHLSEDRIQRRMKPAKQQASITKHGSCHTLRHSFATHLLEDGYDIRTVQELLGHKDVKTT 254

Query: 296 QIYTNVNSKNG 306
           +IYT+V ++ G
Sbjct: 255 RIYTHVLNRGG 265


>gi|255316601|ref|ZP_05358184.1| integrase/recombinase, putative [Clostridium difficile QCD-76w55]
          Length = 269

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 128/290 (44%), Gaps = 61/290 (21%)

Query: 25  LEIERG---LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           LE E+    LSK T  +Y+ D +QFL     Y  + I             +A + K + +
Sbjct: 8   LEFEKSIQQLSKNTKYNYKLDIKQFL---NIYGHQDIN------------KALLKKYKDE 52

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            I + S+K     I S   YL+ + I       NM        +P A  + Q  T +D++
Sbjct: 53  IIENYSIKTVNRKINSLNAYLRFKNI-------NMH-------VPVAKIQNQ--TFIDDM 96

Query: 142 LLHTSHETKWI--------DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           L  T+ E + +        D R  AI+  L+  G R+SE L    ++I  D+  + I+GK
Sbjct: 97  L--TNEEVRLMLNKSIELNDLRAKAIMLGLFYTGARVSELLQFKVKSIQKDE--IMIKGK 152

Query: 194 GDKIRIVPLLPSV-RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K R + L+PSV   A  EY D    D   N Q  LF G RG      VF    R L++
Sbjct: 153 GSKYRKI-LIPSVLNNAFQEYVDNERVD---NTQF-LFSGQRGVLSRSEVF----RILKK 203

Query: 253 YLGLP----LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           Y  L      S   H  RH F  +L   G    +I+ +LGH  LSTT IY
Sbjct: 204 YALLANINEDSVYPHAFRHLFTKNLDKKGVSYSAIKQLLGH-ALSTTDIY 252


>gi|83816142|ref|YP_445021.1| integron integrase subfamily protein [Salinibacter ruber DSM 13855]
 gi|83757536|gb|ABC45649.1| integron integrase subfamily [Salinibacter ruber DSM 13855]
          Length = 318

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 79/162 (48%), Gaps = 21/162 (12%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
           N  I +LLYG GLR+SEAL L  + +    S L ++   D +  V    S+  AI E Y 
Sbjct: 152 NRLIAHLLYGSGLRLSEALRLRVKELDVGTSRLHVR---DGVGGV----SLPDAIAEKYP 204

Query: 216 -----------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
                        P  L+ +   P     R    +    QR +++      +    T HT
Sbjct: 205 NAKTEWRWQYVFPPTTLSED---PRSGAARRHHRSDSAVQRAVKKAADATDIEKRATCHT 261

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           LRHSFATHLL +G D+R+IQ +LGH +L TT  Y +V  ++G
Sbjct: 262 LRHSFATHLLQDGTDVRTIQRLLGHEQLRTTMQYVHVLEQSG 303


>gi|295696281|ref|YP_003589519.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295696714|ref|YP_003589952.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295411883|gb|ADG06375.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295412316|gb|ADG06808.1| integrase family protein [Bacillus tusciae DSM 2912]
          Length = 293

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 128/286 (44%), Gaps = 37/286 (12%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RGLS  T+  Y   TR   IFL F        + + QL   + R F+     +K      
Sbjct: 18  RGLSPNTVDVY---TRAARIFLEFCK------RPVDQLDVQDARRFLLFLICEK------ 62

Query: 89  KRSLSGIKSF---LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           KRS + +  +   +++L    +    N L +   K   +LP+ L+  +  +++++     
Sbjct: 63  KRSAATVNVYNAAVRFLFAVTLNRTFNPLQIPRQKMPKTLPQVLSRPEIASILEHC---- 118

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPL 202
            H  K     + A+  L+YG GLR+SEA ++  Q+I  D  T+R+    GKG K R   L
Sbjct: 119 -HNLK-----HKALFALIYGSGLRVSEAAAIKTQHI--DSRTMRVFVQGGKGAKDRYTVL 170

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTT 261
             +  + + EY+         + +  LF G      +      R      +   +    +
Sbjct: 171 SHTALQLLREYWKAY---RPTHPEGWLFLGTYSLAHITSAAISRAFGDALKRAQISKEVS 227

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            H+LRHSFATHLL +G  L  I+ +LGH  + +T +Y ++ +   G
Sbjct: 228 IHSLRHSFATHLLEDGVSLLQIKELLGHASIRSTTVYLHLANVTSG 273


>gi|253577472|ref|ZP_04854787.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843172|gb|EES71205.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 323

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 131/284 (46%), Gaps = 24/284 (8%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR-AFISKRRTQKIGDRS 87
           + LS LTL+ Y+   +Q  +    + E+++ +  I  ++  +I+  F++    Q   D +
Sbjct: 39  KNLSPLTLRFYQDSIQQMKVA---FQEQQVPL-NIYAITSRQIKNHFVAYLIEQGKSDNT 94

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           +   +  +K FLKYL +    T++    +  +K +  + +   ++Q   L     L    
Sbjct: 95  VNGRIKAVKQFLKYLFEEGWLTQNVAEELHVVKAAKLMIQTFTKEQVAAL-----LEQPD 149

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
              +   R+  ++ LL+  G+RISE  +L   ++   +  +RI +GKG + R VP   + 
Sbjct: 150 RKTFTGYRDFTMMVLLFETGMRISELCNLKIGDLFFKEQEIRITKGKGGRARRVPFQQTS 209

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-----LSTT 261
            K +  Y D+   DL  +    LF  I  K ++     R +++  +  G+      +  +
Sbjct: 210 AKVVRRYLDIRG-DLETD---ALFVNINNKQIST----RALQEKMQVYGIAACIKGVRVS 261

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            HT RH+ A   + NGGD  +++ ILGH  L     Y  + S +
Sbjct: 262 PHTFRHTMAKFYILNGGDPFTLRRILGHSTLDMVDYYVELFSSD 305


>gi|38637799|ref|NP_942773.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527137|gb|AAP85887.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 412

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 136/299 (45%), Gaps = 34/299 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ---LSYTEIRAFI 75
           Q +++ L   R LSK T+ +Y    R+FL     + + +I +  +R    +++ + +A  
Sbjct: 121 QAYVEYLHEARALSKATIVNYVPFIREFL--EDCFGDGRIRLSRLRAGDVVNFVQCQAL- 177

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT---ESNILNMRNLKKSNSLPRALNEK 132
                 ++  +  K   + ++SFL+Y   R   T    + +  + N     S+PR +  +
Sbjct: 178 ------RLHLKRAKLMTTALRSFLRYACYRGDMTLDLAAAVPVVANWSM-QSIPRGIPPE 230

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q   L+ ++   T+     +  R+ AI+ LL   GLR  E   L   +I  +   L ++G
Sbjct: 231 QIQQLLVSINRRTA-----VGRRDYAIILLLARLGLRSGEVAFLELDDIDWNTGVLSVRG 285

Query: 193 KGDKIRIVPLLPSVRKAILEYY-DLCPFDLN----LNIQLPL--FRGIRGKPLNPGVFQR 245
           K  +   +PL   V KAI  Y  D  P   +    L  + P+  FRG  G     G   R
Sbjct: 286 KSGQRNGLPLPADVGKAIAAYLRDGRPQSTSRRVFLRAKAPVIGFRGASGV----GSIVR 341

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +  Q R  +  P +T AH  RH  A  +LS+G  L  I  +LGH    TT+IYT V+ K
Sbjct: 342 HSLQ-RAGIDAP-TTGAHQFRHGLACQMLSHGASLSEIGELLGHHHPQTTKIYTKVDIK 398


>gi|221642264|ref|YP_002533351.1| integrase:recombinase [Bacillus cereus Q1]
 gi|229052846|ref|ZP_04195288.1| Site-specific recombinase, phage integrase [Bacillus cereus AH676]
 gi|229199805|ref|ZP_04326410.1| Site-specific recombinase, phage integrase [Bacillus cereus m1293]
 gi|221243199|gb|ACM15908.1| integrase:recombinase [Bacillus cereus Q1]
 gi|228583670|gb|EEK41883.1| Site-specific recombinase, phage integrase [Bacillus cereus m1293]
 gi|228721504|gb|EEL73006.1| Site-specific recombinase, phage integrase [Bacillus cereus AH676]
          Length = 322

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/284 (21%), Positives = 123/284 (43%), Gaps = 28/284 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G  K T+  Y    R F+         ++ I+ +  ++   ++ +I+K   +++   ++ 
Sbjct: 41  GFRKRTIDDYSKLFRYFM--------RELNIEKVEIITAAHVQMYINKLLNRELAPATVN 92

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             +S +KS  K L ++     +  ++   L+   +    LN  Q        +     +T
Sbjct: 93  IRISALKSVFKRLNEQGYIKSNPAVDFVKLRTDEAPIFTLNHNQI-----KRIFRVVDKT 147

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
            +   R+   + L+  CGLR++E   L   +I  D  T+ + G  +K R    +P  +K 
Sbjct: 148 TYAGYRDYCAMLLMLHCGLRVNEVNQLEANDIDFDNLTIMLAGAKNKNRKTRAVPMTKKV 207

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGI-------RGKPLNPGVFQRYIRQLRRYLGL--PLST 260
             E   L      ++     F G+        GK ++  + ++ + +     GL      
Sbjct: 208 AEELRML------IDESREYFEGVTNVFLTQEGKVIDNDLLRKRMYRYGTLAGLLKECRP 261

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + H+LRH+FAT+ L NGG + ++  I+GH  ++TT  Y  +N +
Sbjct: 262 SPHSLRHTFATNFLRNGGSVNALMRIMGHADITTTMRYVRLNDE 305


>gi|228923867|ref|ZP_04087144.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228948859|ref|ZP_04111134.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228810821|gb|EEM57167.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228835666|gb|EEM81030.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 322

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 125/282 (44%), Gaps = 24/282 (8%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G  K T+  Y   T+ F  F+     EK+ I T +      ++ +I+K  ++++   ++ 
Sbjct: 41  GFRKRTIDDY---TKLFHYFMRELNIEKVEIITAKH-----VQMYINKLLSRELAPATIN 92

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             +S +KS  K L ++     +  ++   L+   +    LN  Q        L     +T
Sbjct: 93  IRISALKSVFKRLHEQGYIKSNPAVDFVKLRTDEAPIFTLNNNQI-----KRLFRVVDKT 147

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
            +   R+   + L+  CGLR++E   L   ++  D  T+ + G  +K R    +P  +K 
Sbjct: 148 TYAGYRDYCAMLLMLHCGLRVNEVNQLEANDLDFDNLTIMLSGAKNKNRKTRAVPMTKKI 207

Query: 210 ILEYYDLCP-----FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST--TA 262
             E   L       F+   N+    F    G  ++  + ++ + +  +  GL      + 
Sbjct: 208 AEELRMLIDESREYFEGTTNV----FLTQDGNSIDNDLLRKRMYRYGQLAGLSKECRPSP 263

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           H+LRH+FAT+ L NGG + ++  I+GH  ++TT  Y  +N +
Sbjct: 264 HSLRHTFATNFLRNGGSVNALMRIMGHADITTTMRYVRLNDE 305


>gi|168187085|ref|ZP_02621720.1| putative integrase/recombinase [Clostridium botulinum C str.
           Eklund]
 gi|169294988|gb|EDS77121.1| putative integrase/recombinase [Clostridium botulinum C str.
           Eklund]
          Length = 274

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 128/279 (45%), Gaps = 27/279 (9%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
            QN  +E+  S  T+  Y  D RQF+ +L  + ++   I  +      + + ++      
Sbjct: 8   FQNYLLEQRKSIATINGYMQDIRQFVEYLTNHHKQ---INKLHNQDIEDYKNYLLYDEQL 64

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
           K+  +++ R L  I  FL +     +T     + M+N   SN L     +K         
Sbjct: 65  KV--KTVNRKLVSINQFLTF-NNVAVTIRQEKVQMQNFL-SNLLTNEDVQK--------- 111

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           +++T+++    D R   I+  LY  G+R+SE L LT  +I  +Q  + I+GKG K R V 
Sbjct: 112 MINTTYKIN--DVRARTIINTLYYTGMRVSEMLQLTIYDI--NQPRINIKGKGSKFRTVF 167

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           +   +     EY    P  + +N    LF G RG  +N       ++++ R   + L   
Sbjct: 168 IPHKLLNTWAEY---IP--VRINKSDKLFTGERG-AINRVTVDTILKKIARLSNVSLDKA 221

Query: 262 -AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            AH  RH +  +L+ N  D+ ++  + GH  ++TT++YT
Sbjct: 222 HAHNFRHLYCKNLIKNDIDISTVADLCGHSSINTTRLYT 260


>gi|160940780|ref|ZP_02088122.1| hypothetical protein CLOBOL_05674 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436300|gb|EDP14067.1| hypothetical protein CLOBOL_05674 [Clostridium bolteae ATCC
           BAA-613]
          Length = 382

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 20/206 (9%)

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
           SF  +L KR    ++ +  +  +K +  +  AL +K+    V+ + +         + R+
Sbjct: 178 SFFTFLHKRGYIIKNPMATVDTIKYTAQVREALTQKE----VERMRVACGE-----NLRD 228

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI-LEYYD 215
           + +L L    G R+SE   +  +NI   Q T+ + GKG K R  P+  S R  + LE Y 
Sbjct: 229 NVVLELFLASGCRVSEVAGMRVENIDMKQKTVIVLGKGKKER--PVFFSDRLLVYLEKY- 285

Query: 216 LCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                L+   + P+   +R   + +     +  +R++ +  G+      H LRH+FATH 
Sbjct: 286 -----LDGRREGPVVISVRAPYQGIKKNAMENIVREISKKAGIEKRVFPHLLRHTFATHA 340

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYT 299
           L+ G  L S+  ++GH  + TT+IY 
Sbjct: 341 LNKGMPLESLSDLMGHACIETTRIYA 366


>gi|303243822|ref|ZP_07330162.1| integrase family protein [Methanothermococcus okinawensis IH1]
 gi|302485758|gb|EFL48682.1| integrase family protein [Methanothermococcus okinawensis IH1]
          Length = 325

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 85/157 (54%), Gaps = 10/157 (6%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEY 213
           RNS I+ +L+  G R+SE L++  ++   ++ T RI+  KG + RIV       +A L Y
Sbjct: 160 RNSLIIRMLWDTGCRVSELLNIRYKDCDFEEGTFRIRNTKGKEERIVVCSNDTLEA-LRY 218

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQRYIRQLRRYLGLPLST--TAHTLRH 267
           Y    ++++ +   P+F+ + GK +N      VF   I++L++   +P +     H+LRH
Sbjct: 219 Y--IQYNIDKSPDAPIFQTVDGKQINRNTITHVFSNVIKELKKEGKIPQNKRIVLHSLRH 276

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             A  LL+ G  L  ++ +LGH  + TT  Y++ N +
Sbjct: 277 GRAVDLLNKGVPLDVVKEVLGHKSIDTTLFYSHSNDR 313


>gi|296502316|ref|YP_003664016.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           BMB171]
 gi|296505552|ref|YP_003667252.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           BMB171]
 gi|296323368|gb|ADH06296.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           BMB171]
 gi|296326604|gb|ADH09532.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           BMB171]
          Length = 301

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 123/274 (44%), Gaps = 15/274 (5%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +  S  T+ +Y+ +   F+ +L  + E    +  I  ++   I+ F+  +         +
Sbjct: 16  KNYSDRTVDTYKYNVGLFITYLNEHHE----VDDIEDIAPFHIKKFVQHQIGLGKKANYI 71

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
              +  ++SF KYL   +    + +  ++ LK+   + +   + + + ++D+    T   
Sbjct: 72  NTLIKSLRSFFKYLVTEEYMPMNIMSKIQLLKEDTEVIKTFTDDEVVKMIDSYDFKT--- 128

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
             +++ARN  I+ +    G+R+SE ++L  + + D  + +RI+GKG K R  P+   ++K
Sbjct: 129 --YLNARNKVIMAMFVDTGIRMSELINLQSEWVYD--TNIRIKGKGSKWRFAPISLMLKK 184

Query: 209 AILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ--LRRYLGLPLSTTAHT 264
            ++ Y  +    F+         F    GKP+     +  ++   LR  +   +  + HT
Sbjct: 185 YMIRYERIKTKYFEKKALEHDNYFLSRAGKPICTVQIENIVKNAGLRADVRKDIRCSPHT 244

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           LRH      L NG DL S   I GH  +  T+ Y
Sbjct: 245 LRHYAIQANLRNGLDLYSCSKIAGHENIQVTKRY 278


>gi|325272710|ref|ZP_08139063.1| Orf28 [Pseudomonas sp. TJI-51]
 gi|324102156|gb|EGB99649.1| Orf28 [Pseudomonas sp. TJI-51]
          Length = 315

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 132/290 (45%), Gaps = 33/290 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL N++     +  T ++Y  D   F  F+     ++      R++    + A+ +    
Sbjct: 30  WLANID-----NPQTRRAYSIDIGDFTAFVGIVHPDQF-----REVQRAHVLAWRADLER 79

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN--MRNLKKSNS--LPRALNEKQALT 136
           + +   +++R L+ + S   +L         N ++   R   +SN    P AL + QA  
Sbjct: 80  RVLSAATIRRKLAALTSLFDHLLDSNAVAGGNPVHGVKRPPNESNEGKTP-ALGDDQAKA 138

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194
           L+D   L +    K +  R+ A+L +L   GLR  EA  L   ++ + +    L++ GKG
Sbjct: 139 LLDAPDLDS---VKGL--RDRALLAVLLYHGLRREEAAMLDVDDLQERRGVRHLKVHGKG 193

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-----LNPGVFQRYIRQ 249
            K+R +PL P   + I +Y +            PLFR +RG+      L  G++   I  
Sbjct: 194 RKVRYLPLHPVAAERIHQYLEAD----GERTTGPLFRSVRGRTPGARLLANGIYS-IIGF 248

Query: 250 LRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             +  G+ ++    H LR + AT+ L +  D+  +Q+ LGH  +STT++Y
Sbjct: 249 WAKTAGIAVAGLGVHGLRATAATNALEHEADIAKVQTWLGHSNISTTRLY 298


>gi|292491385|ref|YP_003526824.1| integron integrase [Nitrosococcus halophilus Nc4]
 gi|291579980|gb|ADE14437.1| integron integrase [Nitrosococcus halophilus Nc4]
          Length = 321

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 105/233 (45%), Gaps = 48/233 (20%)

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
            ++ N+   KK   LP  L+ ++   L+  +        +W+ A       LLYG GLR+
Sbjct: 89  GDLANVVRAKKPQRLPVVLSREEVSRLLGEL-----EGEQWLMAS------LLYGSGLRL 137

Query: 171 SEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSVRK--AILEYY---DLC--- 217
            E + L  ++I  ++  + + +GKG K R+     PL+  +++  A ++ +   DL    
Sbjct: 138 MECMRLRVKDIDFERQAIGVREGKGRKDRVTLLPEPLIVPLKRHLATVKTWHERDLAQGF 197

Query: 218 -----PFDLNLNIQL-------------------PLFRGIRGKPLNPGVFQRYIRQLRRY 253
                P+ L                         P  + +R         Q  IR+  R 
Sbjct: 198 GAVYLPYALERKYPQANKEWGWQYVFPAPKRSVDPRTKLVRRHHYYEKTLQAAIRKAVRR 257

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
             +    + HTLRHSFATHLL +G D+R++Q +LGH  + TTQIYT+V  + G
Sbjct: 258 ARIEKPASCHTLRHSFATHLLESGYDIRTVQELLGHQDIRTTQIYTHVLKRGG 310


>gi|284037946|ref|YP_003387876.1| integrase family protein [Spirosoma linguale DSM 74]
 gi|283817239|gb|ADB39077.1| integrase family protein [Spirosoma linguale DSM 74]
          Length = 390

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 77/151 (50%), Gaps = 22/151 (14%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           L+Y  GLR+SEA  L   ++  D+  + ++ GKG K R+V L   +             D
Sbjct: 240 LIYSTGLRLSEAAHLHLVDLDRDRRLITVRAGKGKKDRVVMLSEKL-------------D 286

Query: 221 LNLNIQLPLFRGIR--------GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           L++N  L  +R  R         +P++    Q+      R+ G+      H+LRHSFATH
Sbjct: 287 LDINTYLNQYRPHRYLFEDASTREPISIRTIQQVYSNTVRFAGIVKRGGIHSLRHSFATH 346

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           LL +G D+R IQ +LGH  + TT  YT+V +
Sbjct: 347 LLESGVDIRHIQELLGHESILTTMRYTHVTA 377


>gi|260424444|ref|YP_003212645.1| hypothetical protein Ctu_1p00690 [Cronobacter turicensis z3032]
 gi|260219252|emb|CBA34606.1| hypothetical protein Ctu_1p00690 [Cronobacter turicensis z3032]
          Length = 318

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 93/195 (47%), Gaps = 18/195 (9%)

Query: 112 NILNMRNLKKSNSLPRALNEKQALTL--VDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
            IL +R ++ S      L   +ALT   V  +      +      R++A+L ++ GCGLR
Sbjct: 117 QILAVRAVRGSR-----LTRGRALTTEEVRALFAFCEQDKSCKGPRDAAMLAVMLGCGLR 171

Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
            SE + L  ++I++    LR+ GKG+K R+  +  +V + +  + D     +      PL
Sbjct: 172 RSEVVGLDYESILEPDQALRVLGKGNKERLAFMPDTVWQRLRHWTDT----VRGEHPGPL 227

Query: 230 FRGIRG------KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
           F  IR       + L P      + + R   G+      H LR +FA+ +L NG DL ++
Sbjct: 228 FTRIRAGDDVTSERLTPQAVYHILTERRTQCGID-DCAPHDLRRTFASMMLDNGEDLITV 286

Query: 284 QSILGHFRLSTTQIY 298
           +  +GH  ++TTQ Y
Sbjct: 287 RDAMGHASVTTTQKY 301


>gi|317052534|ref|YP_004113650.1| integrase family protein [Desulfurispirillum indicum S5]
 gi|316947618|gb|ADU67094.1| integrase family protein [Desulfurispirillum indicum S5]
          Length = 303

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 25/165 (15%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYY 214
              +  Y  GLR+ E + LT  +I  D   +R+     KG+K R+VPL     + + E++
Sbjct: 130 VFFFTCYSMGLRLGEGIRLTVDDI--DTGNMRVHIRDAKGNKDRLVPLPDKTLQVLREFW 187

Query: 215 DLCPFDLNLNIQLPLF------RGIRGK-----PLNPGVFQRYIRQLRRYLGLPLSTTAH 263
            +         + P F      RG++       PL+ G  Q  ++ + R+LGL    + +
Sbjct: 188 AVH--------RHPCFLFPSRKRGLKNAHLVDLPLDRGGIQSAMQSVVRHLGLR-RISCY 238

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +LRHS+ATH+L  G DL  +Q ILGH  + TT  YT++ +    +
Sbjct: 239 SLRHSYATHMLEAGVDLLELQQILGHVSILTTARYTHLTATTANN 283


>gi|254672660|emb|CBA06490.1| putative integrase/recombinase [Neisseria meningitidis alpha275]
          Length = 293

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 112/250 (44%), Gaps = 9/250 (3%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+N+ +  G S+ T+ +Y  D  +    LA    E       + LS  +  A + +   
Sbjct: 13  YLENI-VREGKSEHTVAAYRRDLEELFALLAQMPSEDAG-GVPQDLSRRDFTAALRRLSQ 70

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  R+L R LS  + +  +L +R +       +++  K+   +P+AL ++    ++D 
Sbjct: 71  RGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEWLNRMLDL 130

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GKG K R V
Sbjct: 131 PVDGGDP----LAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQV 186

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           PL     +A+  Y    P     +    LF G  G  L+    Q+ + Q     G     
Sbjct: 187 PLTGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHV 243

Query: 261 TAHTLRHSFA 270
           + H +RHS+A
Sbjct: 244 SPHMMRHSYA 253


>gi|210134881|ref|YP_002301320.1| integrase-recombinase protein [Helicobacter pylori P12]
 gi|210132849|gb|ACJ07840.1| integrase-recombinase protein [Helicobacter pylori P12]
          Length = 356

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 93/194 (47%), Gaps = 14/194 (7%)

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           N    N LP  LN ++    ++ +       +  + ARN  ++ ++   G+R +EAL L 
Sbjct: 158 NQSAGNKLPTHLNNEELEKFLEGI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 215

Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            ++   +    T+ I+GKGDK R V L    + S+ K  L   +L P   +L     LF 
Sbjct: 216 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLMERELYPVKNDL-----LFC 270

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +G  L      R + ++  + GL      AH LRHSFAT L     DL  +Q  LGH 
Sbjct: 271 NQKGGALTQAYLYRQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 330

Query: 291 RLSTTQIYTNVNSK 304
            L+T++IYT+ + +
Sbjct: 331 SLNTSRIYTHFDKQ 344


>gi|146301384|ref|YP_001195975.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146155802|gb|ABQ06656.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 305

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 82/156 (52%), Gaps = 10/156 (6%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYY-D 215
           A+L + YGCGLR SE  SL  +++   +  L + QGKG+K R VP+  +V + + +Y  D
Sbjct: 144 ALLSIAYGCGLRRSEIASLDLKDVNLIKGMLVVRQGKGNKRREVPMSDTVLQYLTKYVRD 203

Query: 216 LCPFDL---NLNIQLPLF--RGIR--GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
             P  L   N N +      RG R  G+ LN  +  + I Q  ++  +    T H LRHS
Sbjct: 204 ERPERLTGRNQNEEAFFINSRGRRSTGENLNE-ILNKMIEQTGKFELVQKEITLHCLRHS 262

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            A HL  N   +  I+S LGH +++TT IY   N K
Sbjct: 263 IAFHLAENNAGIDFIRSFLGHTQINTTYIYAVQNKK 298


>gi|116622416|ref|YP_824572.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225578|gb|ABJ84287.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 332

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 126/293 (43%), Gaps = 28/293 (9%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI- 83
           L  +R +S  T+ SY    R  L F      +  +   +  L  + + AF+     ++  
Sbjct: 19  LMAQRKVSPHTIASYRDTFRLLLQFAQKRLRKAPSQLGLDDLDASLVGAFLEDLENRRHN 78

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD---- 139
           G RS    L+ I+SF +Y    +    S I+     ++  ++P   N++Q   LV     
Sbjct: 79  GARSRNLRLTAIRSFFRY-ASLEAPAHSGII-----QRVLAIP---NQRQRRALVGFLTR 129

Query: 140 ---NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGD 195
                LL   + T+W+  R+ A L      GLR+SE   L  +++ +   + +R +GKG 
Sbjct: 130 PEIEALLAAPNRTQWLGRRDHAFLLTAVQTGLRLSEMTGLRQEDVSLGAGAHVRCRGKGR 189

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ----RYIRQLR 251
           K R  PL      A+L+ +     +        LF   RG PL+    Q    R++ Q R
Sbjct: 190 KERCTPLAKPT-AAVLKAWIR---EQGRGDSKTLFPSTRGGPLSADGVQHLLARHVAQAR 245

Query: 252 RYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           ++         + H LRH+ A  LL  G D   I   LGH  + TTQIY + +
Sbjct: 246 KHCASLRKKRVSPHVLRHAAAMELLQGGVDRAVIALWLGHESVETTQIYLDAD 298


>gi|225155384|ref|ZP_03723876.1| integrase/recombinase (E2 protein) [Opitutaceae bacterium TAV2]
 gi|224803840|gb|EEG22071.1| integrase/recombinase (E2 protein) [Opitutaceae bacterium TAV2]
          Length = 341

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 111/256 (43%), Gaps = 46/256 (17%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           +LK++L+ +  F ++++   +     + ++   K +   P  L  +Q    +  V    S
Sbjct: 85  TLKQALNALVFFYEHVRDEPL---GRLGDIPRPKMAVRAPTVLTREQVKAWIGAV--EDS 139

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPS 205
           H     D     I  LLY  G+RISE L+L  Q+I+ + S + ++  KG+K R VPL  +
Sbjct: 140 H-----DQPYKLICRLLYFTGMRISEVLNLRVQDIIWEHSEILLRAAKGNKDRRVPLPCA 194

Query: 206 VRKAILE------------------------YYDLCP-----------FDLNLNIQLPLF 230
           V   + +                         ++ CP           F    +   P  
Sbjct: 195 VMTDLRQQLERVRLLWQRDQFDKVPVALPDSVFNKCPRYGFGWPWFFVFAAGKHCTHPRL 254

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +    L+    Q   R     +GL    T H LRH++ATHLL +G D+R++Q +LGH 
Sbjct: 255 GHVVRWRLHDKTLQTVTRVAAEKVGLLGVATPHRLRHAYATHLLESGVDIRTVQDMLGHA 314

Query: 291 RLSTTQIYTNVNSKNG 306
            ++TT IYT+ + +  
Sbjct: 315 DVATTMIYTHTSVRGA 330


>gi|283954436|ref|ZP_06371956.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283794053|gb|EFC32802.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 354

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 131/276 (47%), Gaps = 39/276 (14%)

Query: 45  QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK 104
           ++L F   Y+ ++I  + I      E+ A I    T  + D S K     + +F  +L K
Sbjct: 85  EYLNFYKLYSLKQIDEELI-----VEVLASI----TGALSDASKKNYRIAVINFFDFLDK 135

Query: 105 RKITTESNILNMRNLK--------KSNSLPRALNE---KQALTLVDNVLLHTSHETKWID 153
           +    E   +   NLK        K   LP  ++E   K+ L  ++NV   ++       
Sbjct: 136 QNEEDEKAHIFDINLKNWAGIAGSKGVKLPEFMSEEELKKFLDAIENVDFRSN------T 189

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
            RN  I+ ++   G+R+SEA+++   +I +  D   +RI+ KG+K RIV     ++K ++
Sbjct: 190 IRNKLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRIVM----IKKELI 245

Query: 212 EYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRH 267
             YDL   ++++N       LF   +G PL      R + QL    G+      AH LRH
Sbjct: 246 --YDLLK-NVSINYMSKDALLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLRH 302

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +FAT L     DL  +Q  LGH  L+T++IYT+ ++
Sbjct: 303 TFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDN 338


>gi|269137402|ref|YP_003294102.1| putative integrase [Edwardsiella tarda EIB202]
 gi|267983062|gb|ACY82891.1| putative integrase [Edwardsiella tarda EIB202]
          Length = 306

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 87/178 (48%), Gaps = 5/178 (2%)

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           S +  RAL++++   L++      +H  K    R+ A+L  L G GLR  E ++L   + 
Sbjct: 116 SEAAGRALSKEEVRLLLNAT---KTHPCKVRQNRDRALLLTLCGAGLRAGELVTLESHDY 172

Query: 182 MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                TL + QGKG K R V + P V KA+  +  +     +L  ++     + G+PL  
Sbjct: 173 DVATRTLTVRQGKGRKKRAVVVAPPVGKALAAWIKVSADHDSLFCRIHRSGSVTGQPLTT 232

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                 +RQL+    + L  T H LR +F T LL  G DL  ++ + GH  +STT +Y
Sbjct: 233 AGLAGILRQLQETAQIHL-FTPHDLRRTFITRLLEQGTDLNIVRQLAGHSDISTTALY 289


>gi|126664355|ref|ZP_01735339.1| integrase [Marinobacter sp. ELB17]
 gi|126630681|gb|EBA01295.1| integrase [Marinobacter sp. ELB17]
          Length = 319

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 93/219 (42%), Gaps = 49/219 (22%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           KK   LP  L  ++A+ ++   L H  H           I  L+YG GLR++EA  L  +
Sbjct: 100 KKPRKLPVVLTHEEAMCIIGK-LRHPDH----------IIASLMYGSGLRVTEACRLRIK 148

Query: 180 NIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY--DLCPF----DLNLNIQLPLFRG 232
           ++  +Q  + ++ GKG K R   LLP    A L+ +  ++C      D      + L   
Sbjct: 149 DLDFNQQVITVRDGKGAKDRTT-LLPGTLIAELKSHADNICKAWKQKDPQFQHPVSLPHA 207

Query: 233 IRGKPLNPG------------------------------VFQRYIRQLRRYLGLPLSTTA 262
           +  K  N G                                QR +R   +   +      
Sbjct: 208 LSRKYSNAGHSLEWQWLFSSPSLSSDNLGNVARHHRHITSVQRSVRNAVKQACIGKPAGC 267

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           HT RHSFAT LL  G D+R++Q +LGH  L TTQIYT+V
Sbjct: 268 HTFRHSFATELLKRGNDIRTVQDLLGHADLRTTQIYTHV 306


>gi|25986875|gb|AAN16061.1| integron integrase [Pseudomonas stutzeri]
          Length = 320

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 86/187 (45%), Gaps = 41/187 (21%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLP-----------SV 206
           +  LLYG G+R+ EAL L  +++   +  + I+ GKG K R+  +LP           +V
Sbjct: 127 VCSLLYGTGMRLMEALRLRVKDVDFSRHEILIRDGKGMKDRVT-MLPRSLVQPLRRHLAV 185

Query: 207 RKAILEY------------------YDLCPFDLNLNIQLPLFRGIRGKP---------LN 239
            KAI +                   Y   P +       P   G+   P         L+
Sbjct: 186 VKAIHDSEREQGRGDVWLPFALARKYPKAPKEWGWQYVFPA-SGLSVDPRSGVVRRHHLD 244

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               QR  ++  R   +    T HTLRHSFATHLL +G D+R++Q +LGH  + TT IYT
Sbjct: 245 EKRIQRAFKRAVRGASIVKPATPHTLRHSFATHLLESGQDIRTVQELLGHSDVKTTMIYT 304

Query: 300 NVNSKNG 306
           +V ++ G
Sbjct: 305 HVLNRGG 311


>gi|296126706|ref|YP_003633958.1| integrase family protein [Brachyspira murdochii DSM 12563]
 gi|296018522|gb|ADG71759.1| integrase family protein [Brachyspira murdochii DSM 12563]
          Length = 374

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 122/284 (42%), Gaps = 29/284 (10%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE-----------IRAFISKRRT 80
           SK T+Q+Y    + F  FL FY   +   Q+   L Y             I  +I  +  
Sbjct: 30  SKATIQTYAHSLKNFYDFLYFYYNNR---QSKDILLYNTTVWYNKVDRKLIEDYIVYQAD 86

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           +K+    +   +  +K++ KYL K +KI+TE+       LK     P+ + + Q L   D
Sbjct: 87  KKLSADIIHCRIMAVKNYFKYLLKLKKISTETFFDIFDELK----TPKIIVKNQLLIKAD 142

Query: 140 NVLLHTSHETK-----WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGK 193
             L  T    K     + D RN  IL L+   G+R  E   +  QNI    +T+ I + K
Sbjct: 143 KTLSITKAIAKNKNRSFTDDRNIFILLLMSNTGIRRKELACIDIQNINLSNNTITIYKTK 202

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLP-LFRGIRGKPLNPGVFQRYIRQLR 251
           GDK RI+     ++  ++EY  L    L   N Q   LF    G           +  + 
Sbjct: 203 GDKPRIISFSDHIKNKLIEYLKLRKEILQQKNKQHSMLFIKSNGDIFKTKTLTDIMTSIS 262

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           +   + +  T H+LR  FAT +  NG D+  I  +LGH  ++TT
Sbjct: 263 KKTNIKV--TCHSLRRGFATDMAENGTDVYVISKMLGHQNINTT 304


>gi|237707916|ref|ZP_04538397.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229458068|gb|EEO63789.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 352

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 107/228 (46%), Gaps = 23/228 (10%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN--EKQALTLVDNVLLHTSHET 149
           LS +++FLKY+  R +T  +  L   N+    +  R +    K+A+      +L   ++ 
Sbjct: 92  LSALRAFLKYVANRDMTYMAVFLQAENIPNEKTPKRKVIGLSKKAV----KAILSVPNQR 147

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVR 207
                R+  ++ LLY   +R++E L+L   N + D S   + + GKG K R +PLL    
Sbjct: 148 TATGFRDFTLMLLLYSTAIRVNELLTLKISNTVMDCSKPHMIVIGKGRKKRPLPLLSQPV 207

Query: 208 KAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-------- 256
           + +  Y   Y     D++  I     +G+      P   +   + L++Y  +        
Sbjct: 208 QCLKRYLKKYHPKYNDMDALIFYSKSKGVYA----PMSAENVNKMLKKYASIAHETCEDV 263

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           PL+  AH  RH+ A+H L NG ++  I  +LGH  + TT +Y ++ ++
Sbjct: 264 PLNLHAHQFRHAKASHWLENGMNIAQISYLLGHECIQTTMVYLDITTE 311


>gi|33322355|gb|AAQ06901.1|AF496235_1 integrase/recombinase [Lactobacillus delbrueckii subsp. lactis]
          Length = 106

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 49/71 (69%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G+P++     + ++Q+ +  GL      H LRHSFAT +L+NG DLRS+Q +LGH  LST
Sbjct: 24  GRPISSRGIAKAVQQIFQKAGLTAGAHPHELRHSFATAMLNNGADLRSVQELLGHEDLST 83

Query: 295 TQIYTNVNSKN 305
           TQIYT+V+ ++
Sbjct: 84  TQIYTHVSMQH 94


>gi|171472293|gb|ACB46849.1| integrase [Pseudomonas stutzeri]
          Length = 320

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 86/187 (45%), Gaps = 41/187 (21%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLP-----------SV 206
           +  LLYG G+R+ EAL L  +++   +  + I+ GKG K R+  +LP           +V
Sbjct: 127 VYSLLYGTGMRLMEALRLRVKDVDFSRHEILIRDGKGMKDRVT-MLPRSLVQPLRRHLAV 185

Query: 207 RKAILEY------------------YDLCPFDLNLNIQLPLFRGIRGKP---------LN 239
            KAI +                   Y   P +       P   G+   P         L+
Sbjct: 186 VKAIHDSEREQGRGDVWLPFALARKYPKAPKEWGWQYVFPA-SGLSVDPRSGVVRRHHLD 244

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               QR  ++  R   +    T HTLRHSFATHLL +G D+R++Q +LGH  + TT IYT
Sbjct: 245 EKRIQRAFKRAVRGASIVKPATPHTLRHSFATHLLESGQDIRTVQELLGHSDVKTTMIYT 304

Query: 300 NVNSKNG 306
           +V ++ G
Sbjct: 305 HVLNRGG 311


>gi|326204493|ref|ZP_08194350.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
 gi|325985286|gb|EGD46125.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
          Length = 301

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 105/224 (46%), Gaps = 12/224 (5%)

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK-KSNSLPRALNEKQALTLVDNVLLH 144
           ++  R     + F +YL+      ++  L +++ K K    P  L  ++   ++D V L 
Sbjct: 76  KTADRKYFCFRKFCEYLELAGFIEKNPALEVKHKKYKDTKAPNFLEWEEIYQIIDVVALF 135

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI-RIVPLL 203
            +  T    AR++A+L +L   G R SE + L  ++I   ++ + I  +  K    +P+ 
Sbjct: 136 ETENT----ARDAAMLSVLAYLGCRRSEVIDLDWKDIDFQKNEIAIYRRKTKTYDYLPMH 191

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTT 261
           P++  A+  YY    F      + PLF   RG  L+   F++   +   Y G+      T
Sbjct: 192 PNLENAMRRYYAENRF----TPKGPLFLSERGNRLSVTAFKQMFDKAVLYSGIKKEFDIT 247

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            HT RHSF ++++  G  +  IQ   GH  L + Q+Y ++ +++
Sbjct: 248 PHTFRHSFISNMIREGASIAEIQEYTGHSDLGSLQVYFHMGTQH 291


>gi|299531115|ref|ZP_07044528.1| phage integrase family protein [Comamonas testosteroni S44]
 gi|298721072|gb|EFI62016.1| phage integrase family protein [Comamonas testosteroni S44]
          Length = 313

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 84/185 (45%), Gaps = 26/185 (14%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A L LLYG GLR  E L++T   +      ++I GKG K R+V +       I +Y 
Sbjct: 138 RDRAALELLYGSGLRAGELLNITLDQVPASGKPMQIWGKGSKERLVVVGEHAMYWIAQY- 196

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVF--------QRYIRQLRRYLG-----LPLSTT 261
                      Q+ L  G  GK     +F         RY  QLRR +        L  T
Sbjct: 197 -------KTARQVILAAGGHGKRSTSKLFVSSGRYPDYRYY-QLRRMVSRYGRECGLRLT 248

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            H LRH+FA+HL      L +IQ +LGH R  TT  Y ++  ++    +  + DQ HP  
Sbjct: 249 PHALRHAFASHLYQGKATLHTIQLLLGHERQETTAHYVSILHED----IRAMADQHHPRS 304

Query: 322 TQKDK 326
           ++ ++
Sbjct: 305 SKYER 309


>gi|255100237|ref|ZP_05329214.1| putative tyrosine recombinase [Clostridium difficile QCD-63q42]
          Length = 304

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 131/289 (45%), Gaps = 15/289 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE--IRAFIS 76
           + ++  ++ ++ LS+ T+ SY  D ++++        E I  ++I+ +   E  I +++ 
Sbjct: 5   EGYIDYIKDKKKLSENTVASYFMDIKKYM--------EYINQKSIKLVDIVENDIISYLI 56

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           K     +   ++ R +S IKSF  YL    I   +   +++  K        L E++   
Sbjct: 57  KLEKDNVSIATIARMISSIKSFHDYLFLNHICANNPAKDIKKPKIKKENINILTEEEIER 116

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L++   L T    K I  R+ AI  +LYG G+++SE + +  ++I  D   +        
Sbjct: 117 LLNFPKLTTP---KLI--RDKAIFEVLYGTGIKVSELVEMNIEDIDLDIDYIYCNSCCKN 171

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R++PL    +  + +Y       + +  +  LF    G+        + I++      +
Sbjct: 172 QRVIPLCDITKLYLEKYLKEARPKMAVEGEKSLFVSSLGQRFTRQGLWKVIKKYSNLANI 231

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             +     LRHSFA HLL+ G ++  +  ILG+  LS+ Q+Y N   KN
Sbjct: 232 DKNINPTMLRHSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDKN 280


>gi|214027192|gb|ACJ63266.1| IntI1 integrase [Escherichia coli]
          Length = 337

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 126/310 (40%), Gaps = 58/310 (18%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YTNVNSKNGG 307
           Y +V    G 
Sbjct: 312 YXHVLKVGGA 321


>gi|315182768|gb|ADT89681.1| site-specific recombinase IntIA [Vibrio furnissii NCTC 11218]
          Length = 329

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 95/226 (42%), Gaps = 49/226 (21%)

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
           L  R+ KK   LP  L   +   L              I A+      L+YG GLR+ E 
Sbjct: 91  LRFRHSKKQRKLPVVLTPTEIKKLFAA-----------IPAQTLLPYQLVYGSGLRLMET 139

Query: 174 LSLTPQNIMDDQSTLRI-QGKGDKIRIVPLL----PSVRKAILEYYDLCPFD-LNLN--- 224
           + L  ++I  D   +R+ Q KG K RIV L     P +R  I     L   D LN N   
Sbjct: 140 IRLRVKDIDFDYGAIRVWQSKGGKSRIVTLAKELHPLLRFQIETVKHLYTQDQLNPNYDG 199

Query: 225 IQLP------------------LFR-----------GIRGKPLNPGVFQRYIRQLRRYLG 255
           +Q+P                  LF            G     L+    Q+ I + R    
Sbjct: 200 VQMPNRIAEKYPSASKSLEWQFLFPAKQLCRYGDEPGWYRHHLHETTLQKTIIKARFTAE 259

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +    + HTLRHSFATHLL  G D+R++Q  LGH  + TTQIYT+V
Sbjct: 260 IAKPLSCHTLRHSFATHLLEAGADIRTVQEQLGHSDVKTTQIYTHV 305


>gi|319654979|ref|ZP_08009052.1| hypothetical protein HMPREF1013_05674 [Bacillus sp. 2_A_57_CT2]
 gi|317393333|gb|EFV74098.1| hypothetical protein HMPREF1013_05674 [Bacillus sp. 2_A_57_CT2]
          Length = 258

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 111/217 (51%), Gaps = 22/217 (10%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           SL   +  IKS  K+ ++ K  + + + +++  K  + +P+ L E++        LL  +
Sbjct: 45  SLCHRIRFIKSLFKWAQEEKYVSINPVSSIKEPKPESRIPKFLTEEEI------ELLREA 98

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPS 205
            +T +      A+   +Y  G RI E ++L   +I M +QS + + GKG K R V +  +
Sbjct: 99  CKTTF----EKALFEFMYSTGYRIGEVVNLDKHSINMAEQSVI-VFGKGKKEREVYI--N 151

Query: 206 VRKAI-LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ-RY-IRQLRRYLGLPLSTTA 262
            R +I L+ Y     +   + Q  LF  IR  P    + Q RY I+Q+ +  G+      
Sbjct: 152 TRCSIWLKRYR----EERADDQQALFVTIRA-PHRMSIAQMRYVIKQISKRAGINKCIYP 206

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           H LRHS+AT L++NG  L  IQ+++GH +  TT++Y 
Sbjct: 207 HQLRHSYATTLINNGAPLEVIQNLMGHEKSETTRVYA 243


>gi|327538850|gb|EGF25494.1| phage integrase family protein [Rhodopirellula baltica WH47]
          Length = 312

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 119/292 (40%), Gaps = 34/292 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GLSK T+  Y    RQ    LA + + +    T  QL     + F+  +  ++    S++
Sbjct: 30  GLSKRTVHGYLRAVRQ----LADWAQTQPDHVTELQLR----KYFLHLKNERQFAYGSIR 81

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
            + SGIK F     KR   T    L    L+++ +LP  L   Q   ++D          
Sbjct: 82  VAFSGIKFFYTRTCKRNWET----LATMKLQQAKTLPEVLTIDQVHAIIDACR------- 130

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRK 208
                R +   +  Y  GLR+ E  +L   +I   +  + I  GKG K R +PL      
Sbjct: 131 ---TERIALFYWTTYSMGLRLDETRNLQVGDIDGKRMMVHIHRGKGAKDRYIPLPAETLL 187

Query: 209 AILEYYD-------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            +  ++        L P +   + Q          P+     Q+ I ++   L      +
Sbjct: 188 WLRRHWATHRHPRFLFPAEGRDHKQ----SSTSQTPIQTSTVQKAIGKISVKLRFQKKVS 243

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            HTLRHS+ATHLL  G  L+ IQ  LGH  L TT +Y ++      +   EI
Sbjct: 244 THTLRHSYATHLLEAGVSLKVIQKYLGHSSLQTTMVYLHLTETAEANAREEI 295


>gi|317010894|gb|ADU84641.1| XerCD family integrase/recombinase [Helicobacter pylori
           SouthAfrica7]
          Length = 355

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 94/194 (48%), Gaps = 14/194 (7%)

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           N    N LP  LN ++    ++++       +  + ARN  ++ ++   G+R +EAL L 
Sbjct: 157 NQSAGNKLPTHLNSEELEKFLESI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 214

Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            ++   +    T+ I+GKGDK R V L    + S+ K  L   +L P   +L     LF 
Sbjct: 215 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLIERELYPVKNDL-----LFC 269

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +G  L      R + ++  + GL      AH LRHSFAT L     DL  +Q  LGH 
Sbjct: 270 NQKGMALTQAYLYRQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 329

Query: 291 RLSTTQIYTNVNSK 304
            L+T++IYT+ + +
Sbjct: 330 SLNTSRIYTHFDKQ 343


>gi|325963595|ref|YP_004241501.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469682|gb|ADX73367.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 371

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 102/216 (47%), Gaps = 18/216 (8%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           ++G +S L    +R+    S++     L++   LP AL++ +A  L+ +          W
Sbjct: 156 VAGERSGLLAHTRRRPAKRSSL----RLREPRRLPVALSQGEAAKLLGSF-------KSW 204

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
              R+ +I  L+  CGLR +E L L   ++      LR+ GK  + R VPL   +  +++
Sbjct: 205 ---RDQSIAGLMLYCGLRSAEVLGLDVTDVDIGGGWLRVMGKDQRERRVPLDVDL-GSVI 260

Query: 212 EYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           + Y L   P   +  + L      RG+PL P   +   R  R   G+  +   HTLRH+F
Sbjct: 261 QVYLLTERPESDSPRLFLVAKGAHRGQPLTPAGLRTIFRYHRALTGV-AAGHPHTLRHTF 319

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            T L   G DL  +Q++LGH  + TT  Y ++   +
Sbjct: 320 GTALAEAGVDLAVMQALLGHAHVDTTARYIHLAPAH 355


>gi|308182836|ref|YP_003926963.1| integrase-recombinase protein [Helicobacter pylori PeCan4]
 gi|308065021|gb|ADO06913.1| integrase-recombinase protein [Helicobacter pylori PeCan4]
          Length = 356

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 94/194 (48%), Gaps = 14/194 (7%)

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           N    N LP  LN ++    ++++       +  + ARN  ++ ++   G+R +EAL L 
Sbjct: 158 NQSAGNKLPTHLNNEELEKFLESI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 215

Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            ++   +    T+ I+GKGDK R V L    + S+ K  L   +L P   +L     LF 
Sbjct: 216 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLTERELYPVKNDL-----LFC 270

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +G  L      + + ++  + GL      AH LRHSFAT L     DL  +Q  LGH 
Sbjct: 271 NQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 330

Query: 291 RLSTTQIYTNVNSK 304
            L+T++IYT+ + +
Sbjct: 331 SLNTSRIYTHFDKQ 344


>gi|153000209|ref|YP_001365890.1| phage integrase family protein [Shewanella baltica OS185]
 gi|151364827|gb|ABS07827.1| phage integrase family protein [Shewanella baltica OS185]
          Length = 287

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 110/225 (48%), Gaps = 27/225 (12%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           +LK  L+GI  F +++  R  T + ++      K+ + LP+ L+ +     +  +L H  
Sbjct: 65  TLKLQLNGIHFFYEHVLGRDFTVQLSLP-----KRPHKLPQLLSCQD----IAALLCHCQ 115

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205
                 + +  A+L L YGCGLR+SE   +   +I   +  L++ QGKG   R+V + P+
Sbjct: 116 ------NLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGAYDRLVIISPT 169

Query: 206 VRKAILEYY-DLCPFDLNLNIQLPLFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTT 261
           +   + +Y+    P +        LF         PL+   F++ + +  R  G+    +
Sbjct: 170 LLTLLRQYWRAYHPVEW-------LFASTYHDVVYPLHESTFRKALAKAARLAGITKPCS 222

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
            H+LRH++ATH L  G  L  +Q+ LGH  + +T+ Y + + + G
Sbjct: 223 PHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPELG 267


>gi|114331357|ref|YP_747579.1| integron integrase [Nitrosomonas eutropha C91]
 gi|114308371|gb|ABI59614.1| integron integrase [Nitrosomonas eutropha C91]
          Length = 329

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 39/183 (21%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRI-------VPLL-PSVRKAILE 212
           LLYG G+R+ E + L  +++  +++ + ++ GKG K R+       +P+L   +R   L 
Sbjct: 138 LLYGTGMRLMECVRLRVKDVDFERAEILVRDGKGAKDRVTMLPQSLIPVLNEHIRHRRLL 197

Query: 213 YYDLCPFDLNLNIQLP------------------LF----------RGI-RGKPLNPGVF 243
           Y D    D+   + LP                  +F           G+ R   ++  + 
Sbjct: 198 YEDDLAKDMA-AVYLPDALERKYPKAATDWIWQYIFVAKSYSVDPRSGVERRHHMDEKLL 256

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           QR +++     G+    T HTLRHSFATHLL  G D+R++Q +LGH  ++TT IYT+V +
Sbjct: 257 QRAMKKAVLAAGVTKPATPHTLRHSFATHLLQAGYDIRTVQELLGHSDVATTMIYTHVLN 316

Query: 304 KNG 306
           K G
Sbjct: 317 KGG 319


>gi|227892233|ref|ZP_04010038.1| phage integrase/recombinase [Lactobacillus salivarius ATCC 11741]
 gi|227865955|gb|EEJ73376.1| phage integrase/recombinase [Lactobacillus salivarius ATCC 11741]
          Length = 322

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 119/249 (47%), Gaps = 21/249 (8%)

Query: 61  QTIRQLSYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           + I+Q++  ++R +++    KR + K+   +++R  S   SF  +L+   I  +S +  +
Sbjct: 81  KNIQQVTTEDLRKYLTDYQKKRNSSKVTIDNIRRIFS---SFFSWLEDEDIIIKSPVRRI 137

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             +K  N++    ++++   L DN            + R+ A++ LL   G+R+ E + L
Sbjct: 138 HKVKTPNNIKETYSDEELEKLRDNC----------TEIRDLALIDLLASTGMRVGELVRL 187

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
              +I  ++    + GKG+K RIV    +  K  L+ Y L   D N  + + L +    K
Sbjct: 188 NRDDIDFEERECVVLGKGNKERIV-YFDARSKLHLKNYLLSRSDDNNALFVSLKKP--QK 244

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            ++ G  +  IRQL R +G+      H  R + AT+ +  G  +  +Q +LGH R+ TT 
Sbjct: 245 RMSIGGIENRIRQLGREIGIT-KAHPHKFRRTLATNAIDKGMPIEQLQKLLGHERIDTTL 303

Query: 297 IYTNVNSKN 305
            Y  V   N
Sbjct: 304 HYAMVKQTN 312


>gi|242310752|ref|ZP_04809907.1| integrase-recombinase protein xercd family protein [Helicobacter
           pullorum MIT 98-5489]
 gi|239523150|gb|EEQ63016.1| integrase-recombinase protein xercd family protein [Helicobacter
           pullorum MIT 98-5489]
          Length = 353

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 94/190 (49%), Gaps = 10/190 (5%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHT-SHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           K    LP  +NE++    ++ +  +   H+   + ARN  +L  +   G+R+ EAL+L  
Sbjct: 160 KSGQKLPSYMNEEEVQRFLNGIETYPFKHQD--LGARNRLLLKTIIYTGIRVGEALNLKI 217

Query: 179 QNIMDDQS--TLRIQGKGDKIRIVPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           ++IM D     ++++GKG+K R+V +   ++      + +  P ++   +   LF   + 
Sbjct: 218 KDIMLDGEFYVIQVKGKGNKPRVVMIKAKNIHSDFGAWINSRPLEVENEL---LFCNHKA 274

Query: 236 KPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           K L      R + Q+    G+      AH LRHSFAT L     DL  +Q  LGH  L T
Sbjct: 275 KKLTQAYVSRIVEQVLLTNGIRKEKNGAHMLRHSFATLLYQKSQDLVLVQEALGHASLDT 334

Query: 295 TQIYTNVNSK 304
           ++IYT+ + +
Sbjct: 335 SRIYTHFDKQ 344


>gi|222080177|ref|YP_002540040.1| integrase/recombinase [Agrobacterium vitis S4]
 gi|221738822|gb|ACM39601.1| integrase/recombinase [Agrobacterium vitis S4]
          Length = 335

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 134/298 (44%), Gaps = 34/298 (11%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF---ISKRR 79
           +++  +RG S  + ++Y    R   +F A     + ++  + Q+    + AF   I   R
Sbjct: 14  EHMPQQRGYSPHSCEAYAYSFRLLFVFAAGRLHTRPSLLHLEQIDADMVLAFLHHIEHDR 73

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPRALNEKQALT 136
                 R+L+  L+ IK+F++Y++ R       I  +  +   +  + L R L   +   
Sbjct: 74  GNGASTRNLR--LAAIKAFMRYVELRHPNALEQIAQINAIPGKRHDHKLIRHLTMDEVRA 131

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGD 195
           ++D   + T      +  R+ A+L+L +  GLR+SE + LT +N+ +    ++ + GKG 
Sbjct: 132 VLDAPDIKTR-----LGLRDRAMLHLCFAGGLRVSELVGLTLENVTLQPSPSILVFGKGR 186

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRR 252
           + R +PL     + +  +       L +  + P   LF   +G  +    F+  + +  +
Sbjct: 187 RERSLPLWKETARDVRAW-------LAVRGKPPVTELFVNAQGMAMTRAGFEYILEKHAK 239

Query: 253 Y--------LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                    +G PLS   H LRHS A  +L    D+R +   LGH  + TT++Y  ++
Sbjct: 240 AAAARCPTLIGRPLSP--HLLRHSCAVLMLQATRDIRKVALWLGHADIRTTEVYLRMD 295


>gi|161506594|ref|YP_001573715.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189348885|ref|YP_001942080.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
 gi|160346832|gb|ABX19915.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189339023|dbj|BAG48090.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
 gi|325522069|gb|EGD00741.1| tyrosine recombinase [Burkholderia sp. TJI49]
          Length = 770

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 110/278 (39%), Gaps = 57/278 (20%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----------------MRNLKKSNSLP 126
           IG   ++R     + F+  L +R   T   ILN                   L  + S+P
Sbjct: 357 IGRSRVERFDPAWRPFVGPLSERSRDTARRILNAMGEWLVAQQYLRVNPFAGLPAAPSVP 416

Query: 127 -----RALNEKQALTLVDNVLLHTS------------HETKWIDARNSAILYLLYGCGLR 169
                R+L   Q   ++  VL  TS               +  +AR++ +L   Y  GLR
Sbjct: 417 IDATGRSLTRAQWQYVLQTVLRPTSAFDGGDSQLANRSANQAANARDAFLLLFAYVTGLR 476

Query: 170 ISEALSLTP--------QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
            +E  + T            +DD  +L++ GKG + R VP+   +  A+       P  L
Sbjct: 477 RAEIAAATTGALTRTALDGALDDAWSLKVMGKGRRARTVPMPRRLIDALRAQLRARPIPL 536

Query: 222 NLN---IQLPLFRG-IRGKPLNP--------GVFQRYIRQLRRYLGLPLS----TTAHTL 265
            L       PL    + G+ L+P        G+F R   QL        +     + H L
Sbjct: 537 TLETAPADTPLIANLVTGEALHPDVVGRLYKGIFARAADQLAATYPNAAADLRRASTHWL 596

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           RH+FA H L  G D+R +Q +LGH  L TT +YT  ++
Sbjct: 597 RHTFANHGLDAGADIRDMQELLGHASLGTTTLYTKADA 634


>gi|51245830|ref|YP_065714.1| site-specific recombinase (XerD-like) [Desulfotalea psychrophila
           LSv54]
 gi|50876867|emb|CAG36707.1| probable site-specific recombinase (XerD-like) [Desulfotalea
           psychrophila LSv54]
          Length = 345

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 120/302 (39%), Gaps = 65/302 (21%)

Query: 49  FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT 108
           FL FY     + Q   Q+  TE+  ++   +  +    S +R      SFL    +R + 
Sbjct: 54  FLNFYD----SPQEPAQMGITEVEEYLHYLQEHENASTSTQRQALNAISFLF---QRVLG 106

Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
            E   +     K+   LP  L +++   L+             +  ++  +  LLYGCGL
Sbjct: 107 IELTAIAPSRSKRHLKLPTVLTQEEVSQLLSQ-----------LRGQHLLMAQLLYGCGL 155

Query: 169 RISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL------------------------- 202
            + E + L  ++I+  +  + +  GKG   R VPL                         
Sbjct: 156 GLMECIRLRVKDIVFAEGHVFVNAGKGGYDRTVPLPRLITDQLQAQVSRVIQLHKEDIVE 215

Query: 203 ------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP----------LNPGVFQRY 246
                 LP   +A+   Y L   D+N     P  + I   P          +  G+ Q+ 
Sbjct: 216 GYGEVYLP---QAVAFKYPLAAMDVNWQFLFPASK-ISSDPRSGKRRRHHVMESGL-QKA 270

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           I+       +    T HTLRHS+ATHLL  G  L  +Q +LGH  + TT+IYT++  KN 
Sbjct: 271 IKTATSRTNIEKHVTCHTLRHSYATHLLEQGTHLHLLQKLLGHKDVKTTEIYTHLMKKNV 330

Query: 307 GD 308
            D
Sbjct: 331 HD 332


>gi|298249905|ref|ZP_06973709.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297547909|gb|EFH81776.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 369

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 114/270 (42%), Gaps = 16/270 (5%)

Query: 53  YTEEKITIQTIRQLSYTEIRAFISKRR--TQKIG----DRSLKRSLSGIKSFLKYLKKRK 106
           Y +E +    + ++   +I  ++S  R  T K G     RS++     +  F K+L   K
Sbjct: 68  YMKETLNRVYLEEIEEVDIILWLSHLREATSKFGRPYSSRSIQTYYRDVVVFFKWLVAHK 127

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH-------TSHETKWIDARNSAI 159
              E+   N++ +K   +L R   E + L  +D            T  E K + +R+ A 
Sbjct: 128 HLKENPAENLKPVKTEKALIRVFTEDE-LVRLDAACDRAPKGKSLTPDERKALSSRDRAF 186

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           L+LL   G+R+SEA  L   +I  D   + ++GKG K R +P     R+  L+ Y     
Sbjct: 187 LWLLLSTGIRVSEACGLLFGDIEWDMGMIYVRGKGAKERKIPFGKIARQH-LDTYIRYWR 245

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGG 278
               N    +F    G PL     +    +L++  G+     + HT RH FA + + NG 
Sbjct: 246 GGTTNHDEYVFLNAWGAPLRRSAAECIFTRLKKIAGIDDKRVSPHTCRHWFAVNAIKNGV 305

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
               +Q  LGH  L     Y  +  ++  D
Sbjct: 306 PSTVLQGWLGHETLEMINTYVRLAEQDNRD 335


>gi|241992534|gb|ACS73608.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 125/304 (41%), Gaps = 58/304 (19%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGVRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
                FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 252 TYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YTNV 301
           YT+V
Sbjct: 312 YTHV 315


>gi|57242638|ref|ZP_00370575.1| integrase/recombinase (xerC) [Campylobacter upsaliensis RM3195]
 gi|57016567|gb|EAL53351.1| integrase/recombinase (xerC) [Campylobacter upsaliensis RM3195]
          Length = 354

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 134/284 (47%), Gaps = 32/284 (11%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y    ++   +L FY     +++ I +    EI A I    T  + D S K     +
Sbjct: 73  VSTYFNPLKKLFDYLTFYKLH--SLKQIDEALIVEILASI----TGALSDASKKNYRIAV 126

Query: 96  KSFLKYL-KKRKITTESNILNMRNLK--------KSNSLPRALNE---KQALTLVDNVLL 143
            +F  +L K+ +  ++++I ++ NLK        +   LP  ++E   K+ L  +DN   
Sbjct: 127 MNFFDFLNKQNEEDSKAHIFDI-NLKNWAGISGARGTKLPEFMSEDELKKFLEAIDNA-- 183

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVP 201
               + K    RN  I+ ++   G+R+SEAL +  ++I ++     +RI  KG+K R+V 
Sbjct: 184 ----DFKANTIRNKLIIKIIIFTGIRVSEALHIKLKDISEEDGLYHIRIHAKGNKYRLVM 239

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLST 260
           +   +   +L+   +      L+    LF   +G PL      R + Q+    G+     
Sbjct: 240 IKKELISTLLDNVKINY----LSQDSLLFVNKKGTPLTQAYVSRIVEQILFKAGIRKQKN 295

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            AH LRH+FAT L     DL  +Q  LGH  L+T++IYT+ +S+
Sbjct: 296 GAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDSE 339


>gi|167841613|ref|ZP_02468297.1| integrase family protein [Burkholderia thailandensis MSMB43]
          Length = 739

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 77/175 (44%), Gaps = 24/175 (13%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTP--------QNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           AR++  L   Y  GLR +E  + T            +DD  +LR+ GKG + R VP+   
Sbjct: 424 ARDAFGLLFAYATGLRRAELAAATTGALTRTALDGALDDAWSLRVLGKGRRARTVPMPRR 483

Query: 206 VRKAILEYYDLCPFDLNLN---IQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           +  A+       P  L L       PL    + G+ L+P V  R  + +       L+TT
Sbjct: 484 LIDALRAQLRTRPVPLTLETAPADTPLIAHLVTGEALHPDVVGRLFKGIFARAADQLATT 543

Query: 262 ------------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
                        H LRH+FA H L  G DLR +Q +LGH  L+TT  YT  ++ 
Sbjct: 544 YPNAAADLRRASTHWLRHTFANHGLDAGADLRDMQELLGHASLATTTRYTKADAA 598


>gi|169826675|ref|YP_001696833.1| hypothetical protein Bsph_1093 [Lysinibacillus sphaericus C3-41]
 gi|168991163|gb|ACA38703.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 632

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 95/217 (43%), Gaps = 20/217 (9%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++K+ L+ + SF  +         S I      +KS S+P+ L EK+ +  V  +    +
Sbjct: 416 TIKKQLTILSSFYNFCVDEGYIHMSPIKKRWFPRKSKSIPKFL-EKEEIAKVRQLCEKRN 474

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS- 205
                   RN  ++ LL   G RISE   L   +I  +  T ++ GKG KIR V    + 
Sbjct: 475 Q------LRNRVMVELLLTSGCRISEVNMLNKSDIDLENRTAQVLGKGKKIREVHFSETC 528

Query: 206 ---VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
              + + +  Y D  P          LF   RG  L     Q+ + Q+     +  S   
Sbjct: 529 AILLERLLESYIDEHP---------ALFISERGTRLGIRQMQKIVEQVGIDAKIKSSLHP 579

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           H  RH+FAT LL+ G DL  I   LGH +L TT+IY 
Sbjct: 580 HRFRHTFATELLTKGADLSFIADELGHKQLQTTKIYA 616


>gi|89147373|gb|ABD62547.1| integrase [uncultured bacterium]
          Length = 163

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 47/74 (63%)

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           P   GIR   ++P   QR +    R  G+    T HTLRHSFATHLL +G D+R++Q +L
Sbjct: 89  PRGGGIRRHHVDPRSIQRALHDALRRAGVRKPATPHTLRHSFATHLLESGYDIRTVQELL 148

Query: 288 GHFRLSTTQIYTNV 301
           GH  +STT IYT+V
Sbjct: 149 GHKDVSTTMIYTHV 162


>gi|330504266|ref|YP_004381135.1| integron integrase [Pseudomonas mendocina NK-01]
 gi|328918552|gb|AEB59383.1| integron integrase [Pseudomonas mendocina NK-01]
          Length = 321

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 49/81 (60%)

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
           Q P   GI    L+    QR +R+  +  GL    T H+LRHSFATHLL  G D+R++Q 
Sbjct: 232 QDPRGHGIYRHHLHEKTIQRAVREAAQRAGLIKHATPHSLRHSFATHLLEAGQDIRTVQE 291

Query: 286 ILGHFRLSTTQIYTNVNSKNG 306
           +LGH  + TT IYT+V ++ G
Sbjct: 292 LLGHSDVKTTMIYTHVLNRGG 312


>gi|57237704|ref|YP_178952.1| phage integrase family site specific recombinase [Campylobacter
           jejuni RM1221]
 gi|57166508|gb|AAW35287.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni RM1221]
          Length = 354

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 129/275 (46%), Gaps = 37/275 (13%)

Query: 45  QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK 104
           ++L F   Y+ ++I  + I      E+ A I    T  + D S K     + +F  +L K
Sbjct: 85  EYLNFYKLYSLKQIDEELI-----VEVLASI----TGALSDASKKNYRIAVINFFDFLDK 135

Query: 105 RKITTESNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
           +    E   +   NLK        K   LP  ++E++    +D +    + + K    RN
Sbjct: 136 QNEEDEKAHIFDINLKNWAGIAGSKGVKLPEFMSEEELKKFLDAI---ENADFKNNTIRN 192

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
             I+ ++   G+R+SEA+++   +I +  D   +RI+ KG+K R+V     ++K ++  Y
Sbjct: 193 KLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVV----MIKKELI--Y 246

Query: 215 DLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHS 268
           DL     N++I        LF   +G PL      R + QL    G+      AH LRH+
Sbjct: 247 DLLK---NVSINYMSKDALLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLRHT 303

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           FAT L     DL  +Q  LGH  L+T++IYT+ ++
Sbjct: 304 FATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDN 338


>gi|24374071|ref|NP_718114.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24348549|gb|AAN55558.1|AE015694_7 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 287

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 132/280 (47%), Gaps = 29/280 (10%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS-LKRS 91
           +++L+ Y   TR   ++ A    +    Q +  ++  ++ A+      ++   R+ LK  
Sbjct: 11  EISLRGYSARTRNAYLY-AITQLQHYANQPLDNITDEQLTAYFRYLNLERHHSRATLKLQ 69

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L+GI  F +++ KR  T + ++      K+ + LP+ L+ +     +  +L H       
Sbjct: 70  LNGIHFFYEHVLKRDFTIQLSLP-----KRPHKLPQLLSCQD----IAALLYHCQ----- 115

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210
            + +  A+L L YGCGLR+SE   +   +I   +  L++ QGKG   R V L P++   +
Sbjct: 116 -NLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGACDRWVILSPTLLILL 174

Query: 211 LEYYDLC-PFDLNLNIQLPLFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            +Y+    P +        LF         PL+   F++ + +  R   +    + H+LR
Sbjct: 175 RQYWQAYHPVEW-------LFASTYHDVVYPLHESTFRKALAKAARLASITKPCSPHSLR 227

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           H++ATH L  G  L  +Q+ LGH  + +T+ Y + + + G
Sbjct: 228 HAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPELG 267


>gi|86152145|ref|ZP_01070357.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|86153297|ref|ZP_01071501.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|121612957|ref|YP_001000547.1| phage integrase family site specific recombinase [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|315124372|ref|YP_004066376.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
 gi|85840930|gb|EAQ58180.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|85843023|gb|EAQ60234.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|87249540|gb|EAQ72500.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|315018094|gb|ADT66187.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
          Length = 354

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 129/275 (46%), Gaps = 37/275 (13%)

Query: 45  QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK 104
           ++L F   Y+ ++I  + I      E+ A I    T  + D S K     + +F  +L K
Sbjct: 85  EYLNFYKLYSLKQIDEELI-----VEVLASI----TGALSDASKKNYRIAVINFFDFLDK 135

Query: 105 RKITTESNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
           +    E   +   NLK        K   LP  ++E++    +D +    + + K    RN
Sbjct: 136 QNEEDEKAHIFDINLKNWAGIAGSKGVKLPEFMSEEELKKFLDAI---ENADFKNNTIRN 192

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
             I+ ++   G+R+SEA+++   +I +  D   +RI+ KG+K R+V     ++K ++  Y
Sbjct: 193 KLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVV----MIKKELI--Y 246

Query: 215 DLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHS 268
           DL     N++I        LF   +G PL      R + QL    G+      AH LRH+
Sbjct: 247 DLLK---NVSINYMSKDALLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLRHT 303

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           FAT L     DL  +Q  LGH  L+T++IYT+ ++
Sbjct: 304 FATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDN 338


>gi|317128823|ref|YP_004095105.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
 gi|315473771|gb|ADU30374.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
          Length = 280

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 119/273 (43%), Gaps = 32/273 (11%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           SK TL+SY  +    + FL     E +TI  ++     E          +++   S +  
Sbjct: 20  SKKTLKSYRLELGLLIRFLGDMEAEDVTIFHLKNYLIEE---------QKRLKPSSFQHR 70

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK--QALTLVDNVLLHTSHET 149
              I+SF ++  +  + +++  + ++  K    +P+ +NE+  + L +     L      
Sbjct: 71  CKFIRSFFRWAHEYDLLSKNPAIKVKMPKDHYRIPKPVNEETLELLRIASKSPL------ 124

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
                    ++  +Y  G+R+ E  +L  ++      ++ + GKGDK R V         
Sbjct: 125 ------EGLLVEFMYSAGVRVGEVYNLNKKDFNFTNRSVYVFGKGDKEREVYFSKRAEIW 178

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKP---LNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           I  Y+D      +   +   F   + KP   ++    + + ++L R   +  +   H LR
Sbjct: 179 IQRYFD------SRQDEEECFICSKNKPYRRMSIDQIRWHFKKLARKAEVDENVYPHRLR 232

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           HS+A+HL++ G  L  ++ +LGH R  TT++YT
Sbjct: 233 HSYASHLINRGASLEMVRDMLGHKRTETTRVYT 265


>gi|209516758|ref|ZP_03265610.1| integrase family protein [Burkholderia sp. H160]
 gi|209502875|gb|EEA02879.1| integrase family protein [Burkholderia sp. H160]
          Length = 336

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 135/300 (45%), Gaps = 33/300 (11%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRT 80
           L+ L  ER LS+ T +SY    R  L FL     +     TI  +S   ++AF++   +T
Sbjct: 16  LEYLIKERNLSRNTQKSYRDTFRLLLPFLVRQARKSADRLTIDDVSDQRVKAFLADIEQT 75

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD- 139
           +  G  +  + L+ ++S   ++       +++  +++   +   LP     +  +T ++ 
Sbjct: 76  RHCGVVTRNQRLAALRSLANFIG------QNSPEHLQWCGQIRVLPFKKAPRSTITYLEK 129

Query: 140 ---NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM------DDQSTLRI 190
              + LL  +        R+ A+L  LY  G R  EA  +T  ++        D S++ I
Sbjct: 130 PEMDELLAAAQGPSAQQRRDHALLLFLYNTGARADEAAQVTIADLHVALVPKRDLSSVTI 189

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN----PGVFQRY 246
           +GKG+K+R  PL       +    ++ P          +F   R  P+       + +RY
Sbjct: 190 RGKGNKLRQCPLW------LQTIAEIVPLIDGRGSTEHVFLNRRAVPITRFGIHTLVERY 243

Query: 247 IRQLRRYLGLPLST----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           ++  +  + +P  T    + HTLRH+  THLL  G D+ +I++ LGH  + TT IY   +
Sbjct: 244 VQ--KAAVKVPSLTLKRVSPHTLRHTAGTHLLRAGVDINTIRAWLGHVSIDTTNIYAETD 301


>gi|89147563|gb|ABD62641.1| integrase [uncultured bacterium]
          Length = 171

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 45/69 (65%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R   +  GV Q  +++  R  G+    + HT RHSFATHLL NG D+R++Q +LGH  +
Sbjct: 102 LRRHHIGEGVLQVAVKKAVRASGIAKPASCHTFRHSFATHLLENGYDIRTVQELLGHKDV 161

Query: 293 STTQIYTNV 301
           STT IYT+V
Sbjct: 162 STTMIYTHV 170


>gi|88800925|ref|ZP_01116478.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Reinekea sp. MED297]
 gi|88776370|gb|EAR07592.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Reinekea sp. MED297]
          Length = 325

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 39/178 (21%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPL---LPSVRKAILEY---- 213
           LLYG GLR++E ++L  +++     ++ I+ GKG K R+VP+   L    ++++ +    
Sbjct: 133 LLYGSGLRVNECVTLRMKDVDLAMKSITIRNGKGLKARVVPIPERLVGPLQSVMVHRKEQ 192

Query: 214 ----------YDLCPFDLN--------------------LNIQLPLFRGIRGKPLNPGVF 243
                     Y   P+  +                    LN+     R +R    +    
Sbjct: 193 HIQDTLQGAGYVQLPWAFDRKSPNAAQSIQWQFLFSSGVLNVDKKSGRKMRWH-CSTSTL 251

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           Q+ +++      L    T HTLRHSFATHLL+ G D+R+IQ ++GH  L+TT IYT++
Sbjct: 252 QKAVKKAAEQAQLTKRVTCHTLRHSFATHLLTTGTDIRTIQQLMGHKDLNTTMIYTHI 309


>gi|241992601|gb|ACS73655.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 126/304 (41%), Gaps = 58/304 (19%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D+ T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDRGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  + TT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVPTTMI 311

Query: 298 YTNV 301
           YT+V
Sbjct: 312 YTHV 315


>gi|89147538|gb|ABD62629.1| integrase [uncultured bacterium]
          Length = 171

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 45/69 (65%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R   +  GV Q  +++  R  G+    + HT RHSFATHLL NG D+R++Q +LGH  +
Sbjct: 102 LRRHHIGEGVLQVAVKKAVRASGIAKPASCHTFRHSFATHLLENGYDIRTVQELLGHKDV 161

Query: 293 STTQIYTNV 301
           STT IYT+V
Sbjct: 162 STTMIYTHV 170


>gi|241992552|gb|ACS73620.1| IntI1 [uncultured bacterium]
          Length = 337

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 126/310 (40%), Gaps = 58/310 (18%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLHEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVTLPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT  L +G D+R++Q +LGH  +STT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATASLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YTNVNSKNGG 307
           YT+V    G 
Sbjct: 312 YTHVLKVGGA 321


>gi|188586142|ref|YP_001917687.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350829|gb|ACB85099.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 279

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 123/274 (44%), Gaps = 24/274 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  TL++YE   R+FL+              + +++  +I  F+++   +    R++   
Sbjct: 19  SASTLETYERYIRKFLMSWK---------NDLSEVTDDDIDDFLNEYEEKGYNSRTIHVI 69

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           ++ +  F  +LK +K  +    +++        LP+ L+E + + L +    H       
Sbjct: 70  IAALHDFFSHLKYKKYISVIPTVDVEIPNHEKKLPKPLSEIKIIKLKNEAKDH------- 122

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210
              R+ AI+ +L+  G+R+SE +++  ++I  D   + I +GKG K R V +    ++ +
Sbjct: 123 --LRDRAIIEVLHWTGVRVSELINIRIEDIWWDTREIWIRKGKGLKERNVIINYICKQYL 180

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           +EY D    D+       LF   R +P       + + +     G+  + T H  RH+F 
Sbjct: 181 IEYLDTRSDDIPY-----LFITKRKRPFTRQGVNKLLNKYAIKAGIKENVTPHMFRHTFI 235

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           T L++ G +   +  + GH  +   + YT V  K
Sbjct: 236 TDLINKGAEEGVVADLAGHEDIKRLKDYTEVARK 269


>gi|167621618|ref|YP_001672126.1| integrase family protein [Caulobacter sp. K31]
 gi|167645971|ref|YP_001683634.1| integrase family protein [Caulobacter sp. K31]
 gi|167646190|ref|YP_001683853.1| integrase family protein [Caulobacter sp. K31]
 gi|167348401|gb|ABZ71136.1| integrase family protein [Caulobacter sp. K31]
 gi|167348620|gb|ABZ71355.1| integrase family protein [Caulobacter sp. K31]
 gi|167351741|gb|ABZ74467.1| integrase family protein [Caulobacter sp. K31]
          Length = 330

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 135/317 (42%), Gaps = 32/317 (10%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M    LP ++       ++ +   L ++   S  T+  Y  DT + L+  A     K  +
Sbjct: 1   MSAAALPALI-------QRFFTDRLCVQMEASPHTVAGYR-DTFRLLLRYAGARCGKPPV 52

Query: 61  Q-TIRQLSYTEIRAFISKRRTQKIGD-RSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
           + T+  +    +  F++   T +    RS    L+ I+SF +Y+        S+   +  
Sbjct: 53  KLTVEDIDADLVADFLAHTETARGNSARSRNTRLAAIRSFFRYVAM------SDPTWLLQ 106

Query: 119 LKKSNSLPRALNEKQALTLVDN----VLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            ++  ++P     K+ +T +D      LL     T W   R+ A+L L    GLR SE +
Sbjct: 107 CQRILAMPNKRYVKRTVTFLDADEMAALLAAPDRTTWAGRRDHALLLLAIQTGLRASELV 166

Query: 175 SLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
            L   ++ + + + +R  GKG K R  PL     K +  +        + +   PLF  I
Sbjct: 167 GLKLGDVVLGNGAHIRCMGKGRKERATPLRRETAKLLGAW-----IGNDKDENRPLFPSI 221

Query: 234 RGKPLNPGVFQRYIRQ--LRRYLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           RG+ L+    +  +R+  L      P       T HTLRHS A  LL +G D   I   L
Sbjct: 222 RGERLSRDALEHLVRKHCLSASRTCPSIGTKRVTPHTLRHSTAMDLLHHGVDPAVIALWL 281

Query: 288 GHFRLSTTQIYTNVNSK 304
           GH  + TTQIY + + +
Sbjct: 282 GHENVETTQIYIHADMR 298


>gi|205356361|ref|ZP_03223126.1| DNA recombinase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205345746|gb|EDZ32384.1| DNA recombinase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|315058313|gb|ADT72642.1| Integrase-recombinase protein XERCD family [Campylobacter jejuni
           subsp. jejuni S3]
          Length = 354

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 129/275 (46%), Gaps = 37/275 (13%)

Query: 45  QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK 104
           ++L F   Y+ ++I  + I      E+ A I    T  + D S K     + +F  +L K
Sbjct: 85  EYLNFYKLYSLKQIDEELI-----VEVLASI----TGALSDASKKNYRIAVINFFDFLDK 135

Query: 105 RKITTESNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
           +    E   +   NLK        K   LP  ++E++    +D +    + + K    RN
Sbjct: 136 QNEEDEKAHIFDINLKNWAGIAGSKGVKLPEFMSEEELKKFLDAI---ENADFKNNTIRN 192

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
             I+ ++   G+R+SEA+++   +I +  D   +RI+ KG+K R+V     ++K ++  Y
Sbjct: 193 KLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVV----MIKKELI--Y 246

Query: 215 DLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHS 268
           DL     N++I        LF   +G PL      R + QL    G+      AH LRH+
Sbjct: 247 DLLK---NVSINYMSKDALLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLRHT 303

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           FAT L     DL  +Q  LGH  L+T++IYT+ ++
Sbjct: 304 FATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDN 338


>gi|15611684|ref|NP_223335.1| integrase-recombinase protein (XERCD family) [Helicobacter pylori
           J99]
 gi|4155169|gb|AAD06197.1| INTEGRASE-RECOMBINASE PROTEIN (XERCD FAMILY) [Helicobacter pylori
           J99]
          Length = 356

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 93/192 (48%), Gaps = 14/192 (7%)

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           N    N LP  LN ++    ++++       +  + ARN  ++ ++   G+R +EAL L 
Sbjct: 158 NQSAGNKLPTHLNNEELEKFLESI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 215

Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            ++   +    T+ I+GKGDK R V L    + S+ K  L   +L P   +L     LF 
Sbjct: 216 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLTERELYPVKNDL-----LFC 270

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +G  L      + + ++  + GL      AH LRHSFAT L     DL  +Q  LGH 
Sbjct: 271 NQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 330

Query: 291 RLSTTQIYTNVN 302
            L+T++IYT+ +
Sbjct: 331 SLNTSRIYTHFD 342


>gi|119774492|ref|YP_927232.1| phage integrase family site specific recombinase [Shewanella
           amazonensis SB2B]
 gi|119766992|gb|ABL99562.1| site-specific recombinase, phage integrase family [Shewanella
           amazonensis SB2B]
          Length = 318

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 114/281 (40%), Gaps = 74/281 (26%)

Query: 69  TEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
            EI AF++    ++ +   + K +L+     L YL ++ +  E   L      K  SLP 
Sbjct: 49  AEITAFLTYLAVERHVAANTQKVALNA----LIYLYQKFLQIELGELPFSLATKQRSLPI 104

Query: 128 ALNEKQA---LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--- 181
            + + +    L  +  V LH              ++ +LYG GLR++E L L  Q++   
Sbjct: 105 VVTQTEVAHILAKLSGVHLH--------------VIQMLYGSGLRVTECLRLRVQDVDLE 150

Query: 182 --------------------------MDDQ--STLRIQGKGDKIRIVPLLPSVRKA---- 209
                                     + DQ   +L IQ K ++  I P +P+        
Sbjct: 151 RLSVTVHDGKGNKDRQTLLSRSCLNWLPDQIEHSLNIQQKDNQRGIGPSMPTALSVKYPN 210

Query: 210 ---------ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
                    +     LCP         P+   I    L+    ++ +R   R+ G+    
Sbjct: 211 AFREPGWMYLFPSSGLCPH--------PITGEICRHHLHDSAIRKALRIAVRHAGVRKKV 262

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 263 NCHTFRHSFATHLLQAGYDIRTVQELLGHNDVKTTQIYTHV 303


>gi|312136007|ref|YP_004003345.1| integrase family protein [Caldicellulosiruptor owensensis OL]
 gi|311776058|gb|ADQ05545.1| integrase family protein [Caldicellulosiruptor owensensis OL]
          Length = 291

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 130/287 (45%), Gaps = 28/287 (9%)

Query: 20  NWLQNLE---IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           +WL+  E    + G S+ T+ SY  D  +FL +       K   + + Q    E R ++ 
Sbjct: 2   DWLKKFEEDLKQTGKSQNTVASYCADINEFLQWFEETYANKFDGRILEQ-DAREYRNYLL 60

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               QK    S+ R ++ +K+F ++L +    TE NI  +      +   + ++ K+   
Sbjct: 61  NVVKQKPS--SINRKMASLKNFNQFLIQVGTGTEVNICGISVADIHDREIKTISRKELNR 118

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-------DDQSTLR 189
           L   V           + R+ A++ LL   G+R+SE +SLT Q+I         + S + 
Sbjct: 119 LKRAVYASG-------NKRDIALIELLINTGVRVSELVSLTVQDIHLTERNGSQNYSYIA 171

Query: 190 IQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           ++ GKG+K R +PL   V++A+ EY        +      +F   RG PL      + I+
Sbjct: 172 VRNGKGNKYREIPLNSQVKRALEEYLSTRSSSSD-----KIFISQRG-PLRRESVDKIIK 225

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           +  R  G+    +AH LRH+F T L++    L  I  + GH  + TT
Sbjct: 226 KYCRLAGIE-EISAHVLRHTFCTRLVAENVPLPIISKLAGHLSVQTT 271


>gi|12642604|gb|AAK00305.1|AF314190_1 integrase IntI7 [uncultured bacterium PG11]
          Length = 303

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 96/226 (42%), Gaps = 48/226 (21%)

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           I ++   ++   LP A    +      N +L    +T W+ A       LLYG GLR+ E
Sbjct: 89  ITDVARAQRPKRLPVAFTRAEV-----NAVLARLRDTTWLMAS------LLYGSGLRLME 137

Query: 173 ALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAI---------LEYYDL------ 216
            + L  +++   +   +   GKG K R+  L   V +++         L   D+      
Sbjct: 138 CVRLRVKDVDFGNHQIIVRDGKGAKDRVTMLPAPVEESLKRHLTRVKALHEQDVRDGFGG 197

Query: 217 --CPFDLNLNIQ-----------LPLFRGIR----GKP----LNPGVFQRYIRQLRRYLG 255
              PF L    +            P  R  R    G+     +   V QR ++   R  G
Sbjct: 198 VYLPFALERKYKHAEREWMWQYVFPASRRSRDPRSGREQRHHVAETVLQRAVKAAVRQAG 257

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +    + HT RHSFATHLL  G D+R+IQ ++GH  L TT IYT+V
Sbjct: 258 IEKPGSCHTFRHSFATHLLGAGYDIRTIQELMGHSDLHTTMIYTHV 303


>gi|90577779|ref|ZP_01233590.1| integrase/recombinase [Vibrio angustum S14]
 gi|90440865|gb|EAS66045.1| integrase/recombinase [Vibrio angustum S14]
          Length = 480

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 139/311 (44%), Gaps = 43/311 (13%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLI--FLAFYTEEKITIQTIR 64
           P+  SFEL K+              S++ L+++ C    F I   +  +   +I    I 
Sbjct: 179 PQHYSFELSKQ--------------SEVMLEAFSC----FCIRSCVERFDWSRILYAPIL 220

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLK--K 121
           Q   + +++F+S R   +I DR    + +   + L+ L+   +    + ++++  L+  K
Sbjct: 221 Q---STMQSFLSDRIDNQISDRKKAYAPATADNLLRMLRGVAQHAWLAELISVETLERIK 277

Query: 122 SNSLPRALNEKQALTLVDNVLLHTS-----HETKWIDARNSAILYLLYGCGLRISEALSL 176
           +  LPR   +     L  N L H S      + K    R++AI +L+Y  GLR +E +++
Sbjct: 278 AIKLPRGSRQSSGRYLSYNELDHISAITLIQKNKTKALRDNAIFWLMYEAGLRRAEVVNI 337

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLL--PSVRKAILEYYDLCPFDLNLNIQLPL----- 229
              +I  D+  LR+ GKG+K R VP      +  A+ ++  L     N N  LP      
Sbjct: 338 NTYDIDMDRCQLRVVGKGNKERYVPFSRNSDLYNAMEKW--LAIRQQNFNPNLPALFCTI 395

Query: 230 --FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
             ++ +    L         ++L   LG     + H  RHS AT+LL +G DL  +   +
Sbjct: 396 NRYQTLTYMRLTTQTLNDLCKKL-NMLGFSRVVSPHDFRHSVATNLLRSGYDLLLVSKFM 454

Query: 288 GHFRLSTTQIY 298
           GH  ++TTQ Y
Sbjct: 455 GHSSITTTQRY 465


>gi|317009310|gb|ADU79890.1| XerCD family integrase/recombinase [Helicobacter pylori India7]
          Length = 355

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 93/194 (47%), Gaps = 14/194 (7%)

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           N    N LP  LN ++    ++ +       +  + ARN  ++ ++   G+R +EAL L 
Sbjct: 157 NQSAGNKLPTHLNNEELEKFLEGI--DKIEMSAKVCARNRLLIKIIVFTGMRSNEALQLK 214

Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            ++   +    T+ I+GKGDK R V L    + S+ K  L   +L P   +L     LF 
Sbjct: 215 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLIERELYPVKNDL-----LFC 269

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +G  L      R + ++  + GL      AH LRHSFAT L     DL  +Q  LGH 
Sbjct: 270 NQKGSALTQAYLYRQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 329

Query: 291 RLSTTQIYTNVNSK 304
            L+T++IYT+ + +
Sbjct: 330 SLNTSRIYTHFDKE 343


>gi|302023570|ref|ZP_07248781.1| hypothetical protein Ssui0_02736 [Streptococcus suis 05HAS68]
          Length = 202

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 81/159 (50%), Gaps = 5/159 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           RN  ++ LL   GLRISE  +L   NI  +  T++I  KG K+R++ +      ++LE Y
Sbjct: 29  RNLLLISLLLSTGLRISELCNLKLDNINLENRTIQILEKGKKVRLLYIGNDETLSLLEDY 88

Query: 215 DLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                  + +    LF  ++    L     +  ++ +   L L    T H  RHSFAT L
Sbjct: 89  ----IAHHCSHSSYLFTSVKNDDHLKEQSVRLSLKNISHSLQLKKHITPHMFRHSFATML 144

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           L NG D+R IQ +LGH  ++ TQIYT+V+     + + E
Sbjct: 145 LDNGVDIRQIQHLLGHSNINVTQIYTHVSQSKQVEILSE 183


>gi|217962623|ref|YP_002341195.1| site-specific recombinase, phage integrase family [Bacillus cereus
           AH187]
 gi|229142474|ref|ZP_04270973.1| Site-specific recombinase, phage integrase [Bacillus cereus
           BDRD-ST26]
 gi|217067985|gb|ACJ82235.1| site-specific recombinase, phage integrase family [Bacillus cereus
           AH187]
 gi|228640987|gb|EEK97319.1| Site-specific recombinase, phage integrase [Bacillus cereus
           BDRD-ST26]
          Length = 322

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 131/312 (41%), Gaps = 34/312 (10%)

Query: 8   EIVSFELLKERQNWLQNLEIE------RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           E+V F  + E  N    + I        G  K T+  Y    R F+         ++ I+
Sbjct: 13  EVVDFIGIAEELNTEAAITIATQAFRAEGFRKRTIDDYSKLFRYFM--------RELNIE 64

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            +  ++   ++ +I+K   +++   ++   +S +KS  K L ++     +  ++   L+ 
Sbjct: 65  KVEIITVAHVQMYINKLLNRELAPTTVNIRISALKSVFKRLHEQGYIKSNPAVDFVKLRT 124

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
             +    LN  Q        L     +T +   R+   + L+  CGLR++E   L   +I
Sbjct: 125 DEAPIFTLNNNQI-----KRLFRVVDKTTYAGYRDYCTMLLMLHCGLRVNEVNQLEVNDI 179

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-------R 234
             D  T+ + G  +K R    +P  +K   E   L      ++     F GI        
Sbjct: 180 DFDNFTIMLAGAKNKNRKTRAVPMTKKVAEELRML------IDESREYFGGITNVFLTQE 233

Query: 235 GKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           GK ++  + ++ + +     GL      + H+LRH+FAT  L NGG + ++  I+GH  +
Sbjct: 234 GKVIDNDLLRKRMYRYGTLAGLLKECRPSPHSLRHTFATSFLRNGGSVNALMRIMGHADI 293

Query: 293 STTQIYTNVNSK 304
           +TT  Y  +N +
Sbjct: 294 TTTMRYVRLNDE 305


>gi|163855345|ref|YP_001629643.1| integrase/recombinase [Bordetella petrii DSM 12804]
 gi|163855611|ref|YP_001629909.1| integrase/recombinase [Bordetella petrii DSM 12804]
 gi|163855758|ref|YP_001630056.1| integrase/recombinase [Bordetella petrii DSM 12804]
 gi|163259073|emb|CAP41372.1| integrase/recombinase [Bordetella petrii]
 gi|163259339|emb|CAP41639.1| integrase/recombinase [Bordetella petrii]
 gi|163259486|emb|CAP41786.1| integrase/recombinase [Bordetella petrii]
          Length = 331

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 86/188 (45%), Gaps = 44/188 (23%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYY--- 214
           ++ +LYGCGLRISE ++L  +++  +Q  L +  GK D  R+VP+  ++     EY    
Sbjct: 144 MIKILYGCGLRISEVVALQVRDVDLEQGVLHVRHGKNDHERLVPMSSTLTDVCREYAAQA 203

Query: 215 -----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-----STTAHT 264
                DL PF  N           + +P +PG F R  RQ+   +G+P          H 
Sbjct: 204 LTGANDLAPFFFNR----------KREPCSPGDFGRRFRQMLWEVGIPYYGKDRGPRLHD 253

Query: 265 LRHSFATHLLS----NGGDLRS----IQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           LRH+F  H L+       DL +    + + LGH  L++T  Y  + +        E+Y  
Sbjct: 254 LRHTFVCHRLNRWAKENADLNTLLPVLSAYLGHANLTSTYYYLRLTA--------EVY-- 303

Query: 317 THPSITQK 324
             P IT K
Sbjct: 304 --PDITSK 309


>gi|24373596|ref|NP_717639.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24347924|gb|AAN55083.1|AE015645_9 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 287

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 132/280 (47%), Gaps = 29/280 (10%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS-LKRS 91
           +++L+ Y   TR   ++ A    +    Q +  ++  ++ A+      ++   R+ LK  
Sbjct: 11  EISLRGYSARTRNAYLY-AITQLQHYANQPLDNITDEQLTAYFRYLNLERHHSRATLKLQ 69

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L+GI  F +++ KR  T + ++      K+ + LP+ L+ +     +  +L H       
Sbjct: 70  LNGIHFFYEHVLKRDFTIQLSLP-----KRPHKLPQLLSCQD----IAALLYHCQ----- 115

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210
            + +  A+L L YGCGLR+SE   +   +I   +  L++ QGKG   R V L P++   +
Sbjct: 116 -NLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGACDRWVILSPTLLILL 174

Query: 211 LEYYDLC-PFDLNLNIQLPLFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            +Y+    P +        LF         PL+   F++ + +  R   +    + H+LR
Sbjct: 175 RQYWQAYHPVEW-------LFASTYHDVVYPLHESTFRKALAKAARLASITKPCSPHSLR 227

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           H++ATH L  G  L  +Q+ LGH  + +T+ Y + + + G
Sbjct: 228 HAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPELG 267


>gi|89147426|gb|ABD62573.1| integrase [uncultured bacterium]
          Length = 163

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/64 (51%), Positives = 43/64 (67%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           ++P   QR +R   R  G+    T HTLRHSFATHLL  G D+R++Q +LGH  +STT I
Sbjct: 99  VDPRAVQRALRDALRCAGIAKHATPHTLRHSFATHLLDAGYDIRTVQELLGHKDVSTTMI 158

Query: 298 YTNV 301
           YT+V
Sbjct: 159 YTHV 162


>gi|108563083|ref|YP_627399.1| integrase-recombinase protein [Helicobacter pylori HPAG1]
 gi|107836856|gb|ABF84725.1| integrase-recombinase protein [Helicobacter pylori HPAG1]
          Length = 356

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 14/194 (7%)

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           N    N LP  LN ++    ++ +       +  + ARN  ++ ++   G+R +EAL L 
Sbjct: 158 NQSAGNKLPTHLNNEELEKFLEGI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 215

Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            ++   +    T+ I+GKGDK R V L    + S+ K  L   +L P   +L     LF 
Sbjct: 216 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLTERELYPVKNDL-----LFC 270

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +G  L      + + ++  + GL      AH LRHSFAT L     DL  +Q  LGH 
Sbjct: 271 NQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 330

Query: 291 RLSTTQIYTNVNSK 304
            L+T++IYT+ + +
Sbjct: 331 SLNTSRIYTHFDKQ 344


>gi|146300425|ref|YP_001195016.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146154843|gb|ABQ05697.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 305

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 99/208 (47%), Gaps = 20/208 (9%)

Query: 111 SNILNMRNLKKSNSLPRALNE----KQALTL--VDNVLLHTSHETKWIDARNSAILYLLY 164
           SN+L  R+++ +  +P    E    + AL++  + N+  H   + +       A+L + Y
Sbjct: 97  SNLLENRHIENAYYIPSYSEENGKARNALSVEEIRNIYQHCESDLQ------RALLSVAY 150

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
           GCGLR SE  +L  +++M  +  L ++ GKG K R VP+   V + + +Y     ++  +
Sbjct: 151 GCGLRRSEITALNVRDVMLSKGMLIVRDGKGSKRREVPMSDIVVEYLGKYITEERYEKLI 210

Query: 224 N---IQLPLFRGIRGKPLNP----GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
           +   +Q   F    GK +N        ++ I Q   Y  +    T H LRHS A HL+  
Sbjct: 211 SENKVQDAFFIHDSGKRMNGEYLNNTLKKMIEQTNDYKLIQKEITLHCLRHSIANHLMEK 270

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              +  I+  LGH  ++TT IY   N K
Sbjct: 271 NAGIDFIRGFLGHSGINTTYIYAVRNKK 298


>gi|225871676|ref|YP_002753034.1| integrase/recombinase, phage integrase family [Bacillus cereus
           03BB102]
 gi|225785556|gb|ACO25774.1| integrase/recombinase, phage integrase family [Bacillus cereus
           03BB102]
          Length = 361

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 136/332 (40%), Gaps = 45/332 (13%)

Query: 16  KERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL-----AFYTEEKIT------IQT 62
           K +  W  ++  E++  LS  TL +Y  +  +FL +L     A    + +T      I T
Sbjct: 17  KSKMPWYIIEYTEMKTALSPATLYAYITEFEKFLKWLLSNRLAVENGKVVTNICDVPITT 76

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +  L   E R F    + + I  R++ R+ S +KS  KYL +     +      RN+ + 
Sbjct: 77  LENLPLNEARTFQRYLQGEGIETRAINRTFSALKSLFKYLAQNTENEQGENYISRNVMEK 136

Query: 123 NSLPRA---------------LNEKQALTLVDNVLLHTSHETKWID-----------ARN 156
             L +                 NEK  +  +  +        K I             R+
Sbjct: 137 IELHKEKVDAAARADDVANMIFNEKDDVAFLQFLANDYGEMLKDISPKKYSFFQRDKERD 196

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
            AI+ L+ G GLR+SE  SLT  +I   Q  +++  KG+K   V    S    + EY  +
Sbjct: 197 IAIMSLILGTGLRVSEVASLTISSINFRQGKVKVTRKGNKRSSVLATRSCLDDVQEYIKV 256

Query: 217 CPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQL--RRYLGLPLSTTAHTLRHSFATH 272
            P   N   +  L      +GK     V  R I++L  +         + H LRH++AT+
Sbjct: 257 RPSKYNCPQDEDLLFVTNYKGKYTQLTV--RAIQKLCDKYSSAFDEKRSPHKLRHTYATN 314

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
                 DL  ++  LGH  +  T IYTN+N++
Sbjct: 315 HYKENKDLVLLRDQLGHTSVEVTSIYTNINNE 346


>gi|257459633|ref|ZP_05624742.1| hydrogenase expression/formation protein [Campylobacter gracilis
           RM3268]
 gi|257443058|gb|EEV18192.1| hydrogenase expression/formation protein [Campylobacter gracilis
           RM3268]
          Length = 186

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 83/160 (51%), Gaps = 9/160 (5%)

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPS 205
           E +    RN  I+ ++   G+R+ EA++L  ++I    D   +RI+GKG+K RIV     
Sbjct: 17  EFRSFAHRNRLIVKIIVYTGIRVGEAINLKRKDIAPEGDLFVIRIRGKGNKYRIVM---- 72

Query: 206 VRKAILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAH 263
           +++ ++E + L   + N  N +  LF    G PL        + ++    G+      AH
Sbjct: 73  IKRHLIEEH-LNALETNFANKEGYLFVTKNGAPLTQAYVSGIVEKILMSAGIRKEKNGAH 131

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            LRH+FAT L     DL  +Q  LGH  L+T++IYT+ +S
Sbjct: 132 MLRHTFATMLYKKQKDLVLVQEALGHASLNTSRIYTHFDS 171


>gi|317014094|gb|ADU81530.1| phage integrase family site specific recombinase [Helicobacter
           pylori Gambia94/24]
          Length = 356

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 93/192 (48%), Gaps = 14/192 (7%)

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           N    N LP  LN ++    ++++       +  + ARN  ++ ++   G+R +EAL L 
Sbjct: 158 NQSAGNKLPTHLNNEELEKFLESI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 215

Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            ++   +    T+ I+GKGDK R V L    + S+ K  L   +L P   +L     LF 
Sbjct: 216 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLTERELYPVKNDL-----LFC 270

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +G  L      + + ++  + GL      AH LRHSFAT L     DL  +Q  LGH 
Sbjct: 271 NQKGMALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 330

Query: 291 RLSTTQIYTNVN 302
            L+T++IYT+ +
Sbjct: 331 SLNTSRIYTHFD 342


>gi|325107529|ref|YP_004268597.1| integrase family protein [Planctomyces brasiliensis DSM 5305]
 gi|324967797|gb|ADY58575.1| integrase family protein [Planctomyces brasiliensis DSM 5305]
          Length = 310

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 8/146 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--GKGDKIRIVPLLPSVRKAILE 212
           RN A+L  LY  G R+SE  SL   ++ +  S  +I   GKG K R V +  SV +A+++
Sbjct: 156 RNRALLLTLYAGGFRVSELCSLKWCHLQERDSAGQITVFGKGGKTRTVLMPQSVWEAVMK 215

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
             D      + + + P+FR  +   L+     R +++     G+  + + H  RH+ A+H
Sbjct: 216 LRD------SDSSEAPVFRSRKNGHLDESAVWRIVKKAAERAGIDKNVSCHWFRHAHASH 269

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIY 298
            L     +  +Q+ LGH  +STT  Y
Sbjct: 270 ALDRNCPIHLVQATLGHASISTTGRY 295


>gi|300871067|ref|YP_003785939.1| bacteriophage-associated integrase XerDC family protein
           [Brachyspira pilosicoli 95/1000]
 gi|300688767|gb|ADK31438.1| bacteriophage-associated: putative integrase XerDC family protein
           [Brachyspira pilosicoli 95/1000]
          Length = 392

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 144/320 (45%), Gaps = 36/320 (11%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE----------IRAFISKRRTQ 81
           SK T+Q Y    ++F  FL FY + + +  T  Q  YT           I  +I+ +  +
Sbjct: 35  SKATIQIYSSCIKRFYDFLFFYYDNRQSENT--QSYYTTVLYNKVDRKCIEDYIAYQVNK 92

Query: 82  KIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           K+    +   +  +K++ KYL K +KI+TE+      +LK     P+ + +KQ L   D 
Sbjct: 93  KVSADFIHCMIMAVKNYFKYLLKLKKISTETFFDIFDDLK----TPKIIVKKQLLIKADK 148

Query: 141 VLLHT---SHETK-----WIDARNSAILYLLYGCGLRISE-ALSLTPQNIMDDQSTLRIQ 191
            L  T   + ++K     +++ RN  +L L+   G+R  E A        M++ +    +
Sbjct: 149 TLSITKAIAEKSKSPNLFFLEKRNIFMLLLMSNTGIRRKELACIDITNINMNNNTITIYK 208

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQ 249
            KGDK RI+    S++  ++EY  L    L    +    LF     +PLN       +  
Sbjct: 209 TKGDKPRIISFSDSIKSKLIEYLKLREERLTRKNKKHNMLFIKKNSEPLNINTISTIMNI 268

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
           + +   + +  T H+LR  FAT +  +G D+  I  +LGH  ++TT   Y  V +    +
Sbjct: 269 ISKKTNIKV--TCHSLRRGFATDMAESGTDIYVISKMLGHQNINTTVSRYIYVMASMIKE 326

Query: 309 WMMEIYDQTHPSITQKDKKN 328
            M     Q HP    ++K+N
Sbjct: 327 AM-----QNHPFAKNREKQN 341


>gi|296161182|ref|ZP_06843991.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295888523|gb|EFG68332.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 316

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 123/297 (41%), Gaps = 33/297 (11%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            W  NL+  R     T ++Y  D R F+ F A    E   I     ++   + A+     
Sbjct: 30  EWFANLDNPR-----TRRAYRIDLRDFMSFTAITRPEDFRI-----VARAHVLAWRKVLE 79

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +   +++R L+ + S  +YL       E N ++   +K +       NE +   L D
Sbjct: 80  DRALSGATIRRKLAALSSLFEYL------CEKNAVDFNPVKGAKRPKVESNEGKTPALGD 133

Query: 140 N---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL--RIQGKG 194
           +    LL           R+ A+L +L   GLR  E   L  ++I   +  L  RI GKG
Sbjct: 134 HQARALLDAPDPATLKGKRDRALLSVLLYHGLRREELCQLKVRDIHARRGVLHLRIHGKG 193

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP----LNPGVFQRYIRQL 250
           +K+R +PL     + I  Y ++           PLF+  R K        GV++     L
Sbjct: 194 NKLRYLPLHAGSAERIHAYLEVAGH--GETPHAPLFQPARRKTHAALTADGVYKIV---L 248

Query: 251 RRYLGLPLSTTA---HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
               G  +       H+LR + AT+ L +  D+  +Q  LGH  ++TT+IY    S+
Sbjct: 249 AYAAGAQIEVQGFGVHSLRATAATNALEHEADIAKVQEWLGHANIATTRIYDRRKSR 305


>gi|89147432|gb|ABD62576.1| integrase [uncultured bacterium]
          Length = 163

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 44/69 (63%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R     P   QR  R   R+ G+    T HTLRHSFATHLL +G D+R++Q +LGH  +
Sbjct: 94  VRRHHAGPESIQRAPRDALRHAGIAKHATPHTLRHSFATHLLDDGYDIRTVQELLGHKDV 153

Query: 293 STTQIYTNV 301
           STT IYT+V
Sbjct: 154 STTMIYTHV 162


>gi|30265160|ref|NP_847537.1| prophage LambdaBa03, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Ames]
 gi|47778394|ref|YP_022022.2| prophage lambdaba03, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187970|ref|YP_031223.1| prophage LambdaBa03, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Sterne]
 gi|165869874|ref|ZP_02214531.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0488]
 gi|167635252|ref|ZP_02393567.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0442]
 gi|167642002|ref|ZP_02400235.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0193]
 gi|170687981|ref|ZP_02879194.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0465]
 gi|170707721|ref|ZP_02898172.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0389]
 gi|177652943|ref|ZP_02935270.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0174]
 gi|190567810|ref|ZP_03020722.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis Tsiankovskii-I]
 gi|227817893|ref|YP_002817902.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. CDC 684]
 gi|229603805|ref|YP_002869354.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0248]
 gi|254686439|ref|ZP_05150298.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. CNEVA-9066]
 gi|254724438|ref|ZP_05186222.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. A1055]
 gi|254735645|ref|ZP_05193352.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Western North
           America USA6153]
 gi|254744268|ref|ZP_05201948.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Kruger B]
 gi|254755566|ref|ZP_05207599.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Vollum]
 gi|254757021|ref|ZP_05209049.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Australia 94]
 gi|30259837|gb|AAP29023.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. Ames]
 gi|47552099|gb|AAT34497.2| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181897|gb|AAT57273.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. Sterne]
 gi|164714197|gb|EDR19717.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0488]
 gi|167510052|gb|EDR85465.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0193]
 gi|167529295|gb|EDR92047.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0442]
 gi|170127278|gb|EDS96154.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0389]
 gi|170668090|gb|EDT18840.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0465]
 gi|172081718|gb|EDT66788.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0174]
 gi|190561226|gb|EDV15199.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis Tsiankovskii-I]
 gi|227006502|gb|ACP16245.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. CDC 684]
 gi|229268213|gb|ACQ49850.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0248]
          Length = 301

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 136/291 (46%), Gaps = 21/291 (7%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +LLKE   ++ +L+I +  S  T+ +Y  +  Q + +L  + E    +  +  ++   I+
Sbjct: 4   DLLKE---FVFDLKI-KNYSDRTIDTYNYNVGQLITYLNEHHE----VNDVEDVATFHIK 55

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNE 131
            F+  + +       +   +  ++SF KYL   +  +  NI+N ++ LK+   + +   +
Sbjct: 56  KFVQHQISLGKKANYINTLIKSLRSFYKYLVVEEYVS-VNIMNKIKLLKEDVEVIKTFTD 114

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            +   +++     T     +++ARN  I+ +    G+R+SE ++L    I D  ++LRI+
Sbjct: 115 DEVAKMIEAYDFKT-----YLNARNKVIIAMFVDTGMRMSELINLQSSWIYD--TSLRIK 167

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIR- 248
           GKG K R VP+   ++K ++ Y  +    F+         F    GKP+     +  ++ 
Sbjct: 168 GKGSKWRHVPMSLMLKKYMIRYERIKAKYFEKKALEHDNYFLSRAGKPICTVQIENIVKI 227

Query: 249 -QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             LR  +   +  + HT+RH      L NG DL S   I GH  +  T+ Y
Sbjct: 228 AGLRAGVREDIRCSPHTVRHYAIQSNLRNGLDLYSCSKIAGHENIQVTKRY 278


>gi|307637362|gb|ADN79812.1| integrase/recombinase [Helicobacter pylori 908]
 gi|325995955|gb|ADZ51360.1| integrase/recombinase [Helicobacter pylori 2018]
          Length = 363

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 94/194 (48%), Gaps = 14/194 (7%)

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           N    N LP  LN ++    ++++       +  + ARN  ++ ++   G+R +EAL L 
Sbjct: 165 NQSAGNKLPTHLNNEELEKFLESI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 222

Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            ++   +    T+ I+GKGDK R V L    + S+ K  L   +L P   +L     LF 
Sbjct: 223 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLTERELYPVKNDL-----LFC 277

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +G  L      + + ++  + GL      AH LRHSFAT L     DL  +Q  LGH 
Sbjct: 278 NQKGMALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 337

Query: 291 RLSTTQIYTNVNSK 304
            L+T++IYT+ + +
Sbjct: 338 SLNTSRIYTHFDKE 351


>gi|315586648|gb|ADU41029.1| tyrosine recombinase XerC [Helicobacter pylori 35A]
          Length = 355

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 14/194 (7%)

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           N    N LP  LN ++    ++ +       +  + ARN  ++ ++   G+R +EAL L 
Sbjct: 157 NQSAGNKLPTHLNNEELEKFLEGI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 214

Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            ++   +    T+ I+GKGDK R V L    + S+ K  L   +L P   +L     LF 
Sbjct: 215 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLMERELYPIKNDL-----LFC 269

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +G  L      + + ++  + GL      AH LRHSFAT L     DL  +Q  LGH 
Sbjct: 270 NQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 329

Query: 291 RLSTTQIYTNVNSK 304
            L+T++IYT+ + +
Sbjct: 330 SLNTSRIYTHFDKQ 343


>gi|254785845|ref|YP_003073274.1| integron integrase [Teredinibacter turnerae T7901]
 gi|237686300|gb|ACR13564.1| integron integrase [Teredinibacter turnerae T7901]
          Length = 355

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 37/177 (20%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR-------IVPLLPSVRKAILEY 213
           L+YG GLR+ EA+ L  Q++  +Q  + + + KG K R       ++P L + R  +L  
Sbjct: 137 LMYGSGLRVMEAVRLRLQDVDFEQQCIMVREAKGMKSRRTLLPKSLIPGLQAQRTFVLSL 196

Query: 214 Y--DLCPFDLNLNIQLPLFRGIRGKPLNPG---VFQRYIRQL--------RRYLG----- 255
           +  DL      + +   L +     P  PG   +F   +R L        R ++G     
Sbjct: 197 HAKDLLEGFGEVYLPFALAKKYPNAPKEPGWQYLFPANMRALDPRSQVVRRHHIGEQQVQ 256

Query: 256 -----------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                      +    + HT RH FAT+LL +G D+R+IQ +LGH  LSTTQIYT+V
Sbjct: 257 RQVKKAIVAAAIHKKASCHTFRHCFATNLLRSGADIRNIQELLGHKDLSTTQIYTHV 313


>gi|188527478|ref|YP_001910165.1| integrase-recombinase protein [Helicobacter pylori Shi470]
 gi|188143718|gb|ACD48135.1| integrase-recombinase protein [Helicobacter pylori Shi470]
          Length = 356

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 14/194 (7%)

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           N    N LP  LN ++    ++ +       +  + ARN  ++ ++   G+R +EAL L 
Sbjct: 158 NQSAGNKLPTHLNNEELEKFLEGI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 215

Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            ++   +    T+ I+GKGDK R V L    + S+ K  L   +L P   +L     LF 
Sbjct: 216 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLMERELYPVKNDL-----LFC 270

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +G  L      + + ++  + GL      AH LRHSFAT L     DL  +Q  LGH 
Sbjct: 271 NQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 330

Query: 291 RLSTTQIYTNVNSK 304
            L+T++IYT+ + +
Sbjct: 331 SLNTSRIYTHFDKQ 344


>gi|94442306|dbj|BAE93652.1| integron integrase [uncultured bacterium]
          Length = 238

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 81/180 (45%), Gaps = 37/180 (20%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR--------IVPLLPSVRKA 209
           +  +LYG GLR+ E   L  +++  D+  + I+ GKG K R        + PL   +R  
Sbjct: 58  VAMVLYGSGLRLMEGCRLRVKDVDFDRHEIHIRNGKGGKDRKTMLPHRLVGPLEQHLRLV 117

Query: 210 ILEYYDLC--------------------PFDLNLNIQLPLF--------RGIRGKPLNPG 241
             ++ + C                    P+D       P          R  R   L+  
Sbjct: 118 RQQHREDCARGWGSVELPGAMDKKSPTSPWDWAWQWVFPATSAYLHEATRKRRRHHLHET 177

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           V Q+ +R+  + L +    T HT RHSFATHLL +G D+R+IQ +LG   + TT IYT+V
Sbjct: 178 VIQKEVRRSVQALKMSKRVTCHTFRHSFATHLLESGSDIRTIQELLGRADVRTTMIYTHV 237


>gi|228918658|ref|ZP_04082085.1| Integrase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228841003|gb|EEM86218.1| Integrase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 368

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 140/335 (41%), Gaps = 49/335 (14%)

Query: 13  ELLKERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL----------AFYTE-EKIT 59
           E  KE+  W  ++ +E +  LS  TL  Y  +   FL +L             TE  ++T
Sbjct: 17  ECHKEKMPWYIIEYIEEKTNLSPATLYGYLIEYEMFLQWLISSRLATVDGKVVTEIHEVT 76

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           I+T+  L   +++ F S    Q    +++ R+ S +KS   YL              RN+
Sbjct: 77  IETLEHLPLKQVKRFKSYLERQGNKTKAVIRTFSALKSLFNYLTSNTEDDNGECYFYRNV 136

Query: 120 KKSNSLPRA-LNEKQALTLVDNVLLHTSHETKWI-------------------------D 153
                + +  ++       +  V+ H + + K++                          
Sbjct: 137 MAKMEIHKEKIDAAARAKEISEVIFHNNDDIKFMRFLSNEYEQMLQENAPGKLRFFRRDK 196

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            R+ AIL L+ G GLR+SEA SLT  +I      +++  KGDK   +    +    + EY
Sbjct: 197 ERDIAILSLILGTGLRVSEAASLTISSINFRTRYIKVVRKGDKKSSILATQTALDDVQEY 256

Query: 214 YDL------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             +      CP D ++ + +  ++G   + ++    Q+   +  +        + H LRH
Sbjct: 257 LKVRAVRYKCPEDEDI-LFVTNYKGSYAQ-ISVNAIQKLTEKYTK--AFDEKKSPHKLRH 312

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           ++AT+  +   DL  + + +GH  + TT +YTN++
Sbjct: 313 TYATNHYNENKDLVLLANQMGHNSMETTSLYTNID 347


>gi|226228936|ref|YP_002763042.1| integrase [Gemmatimonas aurantiaca T-27]
 gi|226092127|dbj|BAH40572.1| integrase [Gemmatimonas aurantiaca T-27]
          Length = 320

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 114/262 (43%), Gaps = 48/262 (18%)

Query: 93  SGIKSFLKYL---KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD------NVLL 143
           S + +FL YL   +K   +T++  L       +  L + L   Q   +        NVL 
Sbjct: 49  SAVSAFLTYLASERKVAASTQNQALAALAFLYAEVLGQPLGAVQGFLVAKVPHRLPNVLS 108

Query: 144 HTSHETKWIDARNSAILY--LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKG--DKIR 198
             +     +  R +  L   LLYG GLR++E   L  +++  D+  LR++ GKG  D++ 
Sbjct: 109 RAAVRRVLVHMRGTPHLMASLLYGTGLRLNECCQLRVKDLDLDRKELRVRAGKGGRDRVT 168

Query: 199 IVP---------------LLPSVRKAILEYYDLCPFDLNLNIQ-----------LPLFRG 232
           +VP               +L + R +    Y   P  ++                P  R 
Sbjct: 169 MVPESLIAPLREHLRAAKVLMARRASAGGGYVALPGAMDRKAAGASRQWGWCWVFPAARE 228

Query: 233 IRGKP--------LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
            R           L+  V QR + +  R  G+      HT RHSFATHLL +G D+R++Q
Sbjct: 229 YRDASTGERRTHHLHHTVLQRAVAEAARRAGIGQRVGCHTFRHSFATHLLEDGYDIRTVQ 288

Query: 285 SILGHFRLSTTQIYTNVNSKNG 306
            +LGH  +STT IYT+V ++ G
Sbjct: 289 ELLGHRDVSTTMIYTHVLNRGG 310


>gi|247663502|gb|ACT09076.1| IntI1 [Vibrio cholerae]
          Length = 313

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 124/302 (41%), Gaps = 58/302 (19%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAAMLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YT 299
           YT
Sbjct: 312 YT 313


>gi|315932644|gb|EFV11575.1| phage integrase family protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 354

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 129/275 (46%), Gaps = 37/275 (13%)

Query: 45  QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK 104
           ++L F   Y+ ++I  + I      E+ A I    T  + D S K     + +F  +L K
Sbjct: 85  EYLNFYKLYSLKQIDEELI-----VEVLASI----TGALSDASKKNYRIAVINFFDFLDK 135

Query: 105 RKITTESNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
           +    E   +   NLK        K   LP  ++E++    +D +    + + +    RN
Sbjct: 136 QNEEDEKAHIFDINLKNWAGIAGSKGVKLPEFMSEEELKKFLDAI---ENADFRNNTVRN 192

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
             I+ ++   G+R+SEA+++   +I +  D   +RI+ KG+K R+V     ++K ++  Y
Sbjct: 193 KLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVVM----IKKELI--Y 246

Query: 215 DLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHS 268
           DL     N++I        LF   +G PL      R + QL    G+      AH LRH+
Sbjct: 247 DLLK---NVSINYMSKDALLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLRHT 303

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           FAT L     DL  +Q  LGH  L+T++IYT+ ++
Sbjct: 304 FATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDN 338


>gi|229176440|ref|ZP_04303876.1| Site-specific recombinase, phage integrase [Bacillus cereus MM3]
 gi|228607031|gb|EEK64417.1| Site-specific recombinase, phage integrase [Bacillus cereus MM3]
          Length = 322

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 61/284 (21%), Positives = 122/284 (42%), Gaps = 28/284 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G  K T+  Y    R F+         ++ I+ +  ++   ++ +I+K   +++   ++ 
Sbjct: 41  GFRKRTIDDYSKLFRYFM--------RELNIEKVEIITAAHVQMYINKLLNRELAPATVN 92

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             +S +KS  K L +      +  ++   L+   +    LN  Q        +     +T
Sbjct: 93  IRISALKSVFKRLNELGYIKSNPAVDFVKLRTDEAPIFTLNHNQI-----KRIFRVVDKT 147

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
            +   R+   + L+  CGLR++E   L   +I  D  T+ + G  +K R    +P  +K 
Sbjct: 148 TYAGYRDYCAMLLMLHCGLRVNEVNQLEANDIDFDNLTIMLAGAKNKNRKTRAVPMTKKV 207

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGI-------RGKPLNPGVFQRYIRQLRRYLGL--PLST 260
             E   L      ++     F G+        GK ++  + ++ + +     GL      
Sbjct: 208 AEELRML------IDESREYFEGVTNVFLTQEGKVIDNDLLRKRMYRYGTLAGLLKECRP 261

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + H+LRH+FAT+ L NGG + ++  I+GH  ++TT  Y  +N +
Sbjct: 262 SPHSLRHTFATNFLRNGGSVNALMRIMGHADITTTMRYVRLNDE 305


>gi|88602489|ref|YP_502667.1| phage integrase [Methanospirillum hungatei JF-1]
 gi|88187951|gb|ABD40948.1| phage integrase [Methanospirillum hungatei JF-1]
          Length = 301

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 135/309 (43%), Gaps = 43/309 (13%)

Query: 29  RGLSKLTLQSYECDTRQFLIFL------------AFYTEEKITIQTIRQLSYTEIR---A 73
           R  S+ TL SY+   R+F  F+             +  +E + ++T   +S ++I     
Sbjct: 2   RNYSQKTLSSYDLTIRRFGQFIWLTRSFRGDLSKKWEHKELLRLETGVDVSASDISRYLE 61

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+S  R  +    +  R LS + SF ++L  +++   + +  +   K      + L   Q
Sbjct: 62  FLSLDR--QYHATTYNRILSSLSSFYRFLLMQEVVETNPVPRIDRPKVKEKELKYLKHSQ 119

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
            + L+ ++           D R+  ++ ++Y  G+R+SE  ++  +++  D   +R+ GK
Sbjct: 120 VMRLLQSI----------PDERDRLMIRIIYATGVRVSELCTMNVEDVDFDDQMIRVLGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K+R+V +       I          +   +  PLF G  G  ++    Q   ++    
Sbjct: 170 GGKVRMVFVDEVTLNEIAGL-------IGNRLSGPLFPGQGGNHISVRTVQLIFKKY--- 219

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              P   T H +RHS+A+ L     +LR +Q  LGH  + TT++Y + +     D   ++
Sbjct: 220 --APPGITPHKIRHSYASELYRRSRNLRVVQENLGHASIKTTEVYLHTDV----DERRQV 273

Query: 314 YDQTHPSIT 322
           Y +  P +T
Sbjct: 274 YREFFPLVT 282


>gi|12642607|gb|AAK00307.1|AF314191_1 integrase IntI6 [uncultured bacterium PG2]
          Length = 305

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 87/178 (48%), Gaps = 39/178 (21%)

Query: 162 LLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRI----VPLLPSV-----RKAI 210
           LLYG GLR+ E L L  +++    +Q T+R  GKG+K R+     PL P++     R  +
Sbjct: 129 LLYGSGLRLMECLRLRVKDLDFHYNQITIR-DGKGNKDRVTMLPAPLKPALELHLKRVKL 187

Query: 211 LEYYDLC--------PFDLNLNI---------QLPLFRGIR------GKP----LNPGVF 243
           L   DL         P  L+            Q     G R      GK     ++  V 
Sbjct: 188 LHEEDLSGGFGEVFLPHALDRKYPNASREWAWQYVFPAGKRSIDPRSGKQRRHHVSESVL 247

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +R ++      G+    + HTLRHSFATHLL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 248 RRVVKDAVSRAGIAKPASCHTLRHSFATHLLEDGYDIRTVQELLGHKDVSTTMIYTHV 305


>gi|310813968|gb|ADP30794.1| IntI1 [Providencia rettgeri]
          Length = 313

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 81/175 (46%), Gaps = 37/175 (21%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207
           LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R         
Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198

Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                                  +A   +     F  + +   P    +R   +    FQ
Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           R  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT
Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313


>gi|225850417|ref|YP_002730651.1| phage integrase family protein [Persephonella marina EX-H1]
 gi|225645629|gb|ACO03815.1| phage integrase family protein [Persephonella marina EX-H1]
          Length = 292

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 129/299 (43%), Gaps = 69/299 (23%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI-RAFISKRRTQKIGDR---- 86
           S  T+++Y  D +QF             +Q++     TEI +A I+K R     +R    
Sbjct: 18  SAYTVRNYRTDLKQF-------------VQSVGDKDITEITKADIAKFRMFLQANRRKSS 64

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ---ALTLVDNVLL 143
           ++ R L+ + SF +YL   ++ + S +      K S  +P +L+ ++    L   +N+L 
Sbjct: 65  TIARKLASVNSFFEYLIDLELISSSPVSKSHRPKVSQKIPSSLSNEEIQKVLKSCENLLE 124

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSL--------------TPQNIMDDQST-- 187
            T             ++ L+   G+R SE LS+               P  I+++ +   
Sbjct: 125 KT-------------VIVLMLTTGIRSSELLSIRRSDILIEKDGRTFAPDTILENYTDGS 171

Query: 188 ----LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
               ++I+GKG K R+VP+       +L+Y       L+ N    LF      P +    
Sbjct: 172 EVAYIKIKGKGGKERVVPVSGKPLNILLQY-------LDKNRDERLF------PFSYHTL 218

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +R I  +    G+PL    H LRH+ AT  L +G +LR IQ +LGH    TT  Y  V 
Sbjct: 219 RRLISNIGSRSGIPLH--PHKLRHTAATIALKSGAELRVIQELLGHASPLTTARYAKVG 275


>gi|213972099|ref|ZP_03400191.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato T1]
 gi|302061577|ref|ZP_07253118.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. tomato K40]
 gi|302131091|ref|ZP_07257081.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213923137|gb|EEB56740.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato T1]
          Length = 318

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 124/291 (42%), Gaps = 33/291 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W  N+   R     T ++Y+ D R F  F+     E+      R ++   + A+ ++   
Sbjct: 31  WFANIRNPR-----TRRAYQADLRDFCSFVGLAGAEEF-----RVVNRAHVLAWRAQLER 80

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN-LKKSNSLPRALNEKQALTLVD 139
           + +   +++R L+ + S   YL       ++N L   N +      P   NE +   L D
Sbjct: 81  RALSGATIRRKLAALASLFDYL------LDNNALAGGNPVHGVARPPVETNEGKTPALGD 134

Query: 140 NV---LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194
           +    LL    +      R+ AIL +L   GLR  E   L   ++ + +    LRI GKG
Sbjct: 135 DQAKRLLDAPDDESLQGLRDRAILAVLLYQGLRREELSLLQTGDLQERRGVKHLRIHGKG 194

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQL-R 251
            KIR +PL P   + I     +C        Q P  LF  +RGK    G+  + +  +  
Sbjct: 195 GKIRYLPLHPVAAERIY----VCLVRDGDRAQTPGALFCSLRGKTSGTGITGKGVYGVVS 250

Query: 252 RYLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           ++    L        H LR + AT+ L +  D+  +Q  LGH  +STT++Y
Sbjct: 251 KWASAALIHVDGLGVHGLRATAATNALEHDADIAKVQMWLGHANISTTRLY 301


>gi|159901555|ref|YP_001547801.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894594|gb|ABX07673.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 160

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 75/149 (50%), Gaps = 13/149 (8%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPL-LPSVRKAILEY----YD 215
           ++Y CGLRI E +SL   +I   +  L I  GKG+K R VPL LP++ +    +    + 
Sbjct: 2   VIYACGLRIQEGVSLQVSHIDSARMVLHIHAGKGNKDRRVPLPLPALVRLRTHWRTHRHP 61

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
           +  F          +R    +P+      R  +   +  G+    T HTLRHS+ATHLL 
Sbjct: 62  IWLFPAR-------YRDSLDQPMAQRSVARAFQVALQESGIQKPATVHTLRHSWATHLLE 114

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            G +LR IQ  LGH    TT +YT++  +
Sbjct: 115 AGINLRIIQDWLGHRSPRTTALYTHLTPQ 143


>gi|182417143|ref|ZP_02948516.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum 5521]
 gi|237667184|ref|ZP_04527168.1| phage integrase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378985|gb|EDT76491.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum 5521]
 gi|237655532|gb|EEP53088.1| phage integrase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 332

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 136/300 (45%), Gaps = 36/300 (12%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +LQ  ++E   SK TL +Y    R F  F+          + +  ++  +IR F++   T
Sbjct: 61  YLQVKKLE-NYSKATLSNYMYTLRNFSTFIN---------KPVSTITKNDIRYFMAINYT 110

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +   ++   L+ +K+F +++++ +I  ++   ++   +    LP+ L +   +  ++ 
Sbjct: 111 N-LKPSTVNNKLASLKAFFEWMEQEEIIPKNPARHLSGTR----LPKRLRKSLTIEELEK 165

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           + L         D R   ++  L+  G RISE +     ++    ++LR+ GKGDK RIV
Sbjct: 166 IRLVCK------DVRERVLIEFLFATGCRISEVVKANISDLDLSNNSLRVIGKGDKQRIV 219

Query: 201 PLLPSVRKAILEYYDLCPFD---LNLNIQLPLFR-GIRGKPLNPGVFQRYIRQLRRYLGL 256
                 +  +  Y D    +   L ++ + P  R   RG  L            R  +G 
Sbjct: 220 FFSDKTKLHLKNYIDTRKDNEDALFISSKFPYNRISKRGLELIVSKIGE-----RSNIGK 274

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           P+    H LRH+ AT  L +G D+ +IQ +LGH   STTQIY    ++N  D +   Y Q
Sbjct: 275 PV--FPHLLRHTMATLGLQSGADITTIQHLLGHTTPSTTQIY----AENSLDNLKHEYKQ 328


>gi|125973642|ref|YP_001037552.1| phage integrase [Clostridium thermocellum ATCC 27405]
 gi|125713867|gb|ABN52359.1| phage integrase [Clostridium thermocellum ATCC 27405]
          Length = 301

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 108/232 (46%), Gaps = 33/232 (14%)

Query: 84  GDRSLKRS-----LSGIKSFLKYLKKRKITTESNILNMRNLK-KSNSLPRALNEKQALTL 137
           G R LK +     L+ +K +  +L+  K    +   N+R +K +S ++ ++L+E+    L
Sbjct: 72  GTRHLKETTINLRLASLKCYFSFLESEKYIKHNPARNIRKIKLQSPNIAKSLDEQTYRAL 131

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS--LTPQNIMDDQSTLRIQGKGD 195
                    H  +  +  + A+  +   CG+R  E ++  LT  +I D + TL+I GK +
Sbjct: 132 -------RRHVYRGGNKAHIAMFEIFTRCGVRNFELINIRLTDFDISDRKGTLKIVGKLN 184

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPG----VFQRYIR 248
           K+R +PL   VR AI  +      ++  NI+     LF   R  P        +F++Y  
Sbjct: 185 KVRYIPLHKDVRDAINNW-----MEIRKNIKTEYDNLFISERKTPYTRSGIWKIFKKYCE 239

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR-LSTTQIYT 299
           Q    +G+    T H+ RH F   LL NG D+  +  + GH     T Q+YT
Sbjct: 240 Q----IGIT-DVTIHSFRHYFCRTLLKNGVDISVVAKLAGHSSGFVTAQVYT 286


>gi|157415130|ref|YP_001482386.1| phage integrase family site specific recombinase [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|157386094|gb|ABV52409.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|307747772|gb|ADN91042.1| Site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni M1]
          Length = 354

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 129/275 (46%), Gaps = 37/275 (13%)

Query: 45  QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK 104
           ++L F   Y+ ++I  + I      E+ A I    T  + D S K     + +F  +L K
Sbjct: 85  EYLNFYKLYSLKQIDEELI-----VEVLASI----TGALSDASKKNYRIAVINFFDFLDK 135

Query: 105 RKITTESNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
           +    E   +   NLK        K   LP  ++E++    +D +    + + +    RN
Sbjct: 136 QNEEDEKAHIFDINLKNWAGIAGSKGVKLPEFMSEEELKKFLDAI---ENADFRNNTVRN 192

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
             I+ ++   G+R+SEA+++   +I +  D   +RI+ KG+K R+V     ++K ++  Y
Sbjct: 193 KLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVV----MIKKELI--Y 246

Query: 215 DLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHS 268
           DL     N++I        LF   +G PL      R + QL    G+      AH LRH+
Sbjct: 247 DLLK---NVSINYMSKDALLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLRHT 303

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           FAT L     DL  +Q  LGH  L+T++IYT+ ++
Sbjct: 304 FATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDN 338


>gi|325067049|ref|ZP_08125722.1| integrase family protein [Actinomyces oris K20]
          Length = 236

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 99/219 (45%), Gaps = 14/219 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRAFISKRRTQKI 83
           L ++R LS  T+++Y  D    L FL     +   + T +  L   ++R +++       
Sbjct: 25  LALQRDLSAHTVRAYLVDISDLLSFLGVGEGDAEPVDTALATLDLADLRDWLAAMAASGH 84

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
              +L R  + +++F  +  +  + T      +R  +  N LP  L  +QA  L+     
Sbjct: 85  SRATLARRSASVRTFSSWAFETGLLTSDVAARLRAPRVDNRLPGVLTTQQASQLLKTAS- 143

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL- 202
             + +   +  R+ AI+  LY  G+R+SE + L   ++   Q TLR+ GKG K R VP  
Sbjct: 144 DLASDGHVLAVRDLAIVETLYATGVRVSELVGLDVADLDHSQRTLRVLGKGRKERTVPYG 203

Query: 203 LPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGK 236
           LP+ R   LE +     ++C  D        LF G RG+
Sbjct: 204 LPAARA--LEAWLHRRGEICAVDAG----GALFLGARGR 236


>gi|317181986|dbj|BAJ59770.1| integrase-recombinase protein [Helicobacter pylori F57]
          Length = 355

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 92/194 (47%), Gaps = 14/194 (7%)

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           N    N LP  LN ++    +D +       +  +  RN  ++ ++   G+R +EAL L 
Sbjct: 157 NQSAGNKLPTHLNNEELEKFLDGI--DKIEMSAKVRTRNRLLIKIIVFTGMRSNEALQLK 214

Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            ++   +    T+ I+GKGDK R V L    + S+ K  L   +L P   +L     LF 
Sbjct: 215 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLMERELYPVKNDL-----LFC 269

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +G  L      + + ++  + GL      AH LRHSFAT L     DL  +Q  LGH 
Sbjct: 270 NQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 329

Query: 291 RLSTTQIYTNVNSK 304
            L+T++IYT+ + +
Sbjct: 330 SLNTSRIYTHFDKQ 343


>gi|119714859|ref|YP_921824.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119535520|gb|ABL80137.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 412

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 128/289 (44%), Gaps = 25/289 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            W + + ++RGL++ ++  Y    R + + L           +  +L+ T I A+++ R 
Sbjct: 127 QWCEWMRVQRGLTEKSIVRY----RYYAVGLLDQVTTADGSVSWDRLNATMINAYVADR- 181

Query: 80  TQKIGDRSLKRSLSGIKSFLKY-LKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALT 136
            +  G  +    +  ++  L++ L   ++  +  + IL     K+S  LPR +   Q   
Sbjct: 182 GRGYGVAAKAHVVGSVRCLLRWALSTGRLDRDLSAGILKPSGTKRS--LPRGVTADQV-- 237

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
                LL     T  I AR+ A++ +L   GLR  EA  L   +I      +R+ GKG +
Sbjct: 238 ---AALLAVCDPTTAIGARDRALVLMLVRLGLRAGEAAHLMLDDIDWAGGQVRVTGKG-R 293

Query: 197 IRIVPLLPSVRKAILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
             ++PL   V +A+  +  L P   D  + ++L   R +       GV  R    L    
Sbjct: 294 EHVLPLPVDVGQALEAWLRLRPEALDRAVFVRLRAPRQMMTASGTSGVIAR----LSSMA 349

Query: 255 GL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           G+ P+   AH LRH+ A  +L+ GG L   + +LGH    TT  Y  V+
Sbjct: 350 GIEPIH--AHRLRHTAAMDVLAAGGTLSEAKELLGHVYTVTTMTYAKVD 396


>gi|257074479|ref|YP_003162877.1| integrase [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257048700|gb|ACV37886.1| integrase family protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 322

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 124/297 (41%), Gaps = 40/297 (13%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W  NL      +K T ++YE     F+ F      E+           T IRA +   R 
Sbjct: 34  WFANLG-----NKATRRAYENALGDFMKFTGIVKPEEFR---------TVIRAHVIAWRD 79

Query: 81  ----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN--LKKSNSLPRALNEKQA 134
               + +   +++  L+ + S  + L ++   T + +  ++   ++       AL + QA
Sbjct: 80  DLVQRALSGMTVRHRLAALSSLFESLCEKNAVTHNPVKGVKRPPVESYEGKTPALGDHQA 139

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ---STLRIQ 191
             L+D               R+ AIL  L    LR  E   LT ++   ++     L++ 
Sbjct: 140 RKLLD-----APDGASLKGKRDRAILATLLYHALRRDELCRLTVKDYKHERRGVPHLKVF 194

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG--------KPLNPGVF 243
           GKG KIR VPL P+    I +Y ++       +    LFR +R         + + P   
Sbjct: 195 GKGGKIRYVPLHPAAGGLIGDYLEIAGH--GADDAGALFRPLRNNCTTGGLERAITPDAV 252

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            + +RQ    LG  +   AH LR + AT+ L +  D+  +Q  LGH  ++TT+IY +
Sbjct: 253 YKLVRQYSTALGFAIG--AHALRATAATNALDHQADIAKVQEWLGHANIATTRIYDH 307


>gi|217033697|ref|ZP_03439124.1| hypothetical protein HP9810_5g39 [Helicobacter pylori 98-10]
 gi|216943886|gb|EEC23323.1| hypothetical protein HP9810_5g39 [Helicobacter pylori 98-10]
          Length = 370

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 14/194 (7%)

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           N    N LP  LN ++    ++ +       +  + ARN  ++ ++   G+R +EAL L 
Sbjct: 157 NQSAGNKLPTHLNNEELEKFLEGI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 214

Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            ++   +    T+ I+GKGDK R V L    + S+ K  L   +L P   +L     LF 
Sbjct: 215 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLMERELYPVKNDL-----LFC 269

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +G  L      + + ++  + GL      AH LRHSFAT L     DL  +Q  LGH 
Sbjct: 270 NQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 329

Query: 291 RLSTTQIYTNVNSK 304
            L+T++IYT+ + +
Sbjct: 330 SLNTSRIYTHFDKQ 343


>gi|24373721|ref|NP_717764.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24373766|ref|NP_717809.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24348094|gb|AAN55208.1|AE015659_2 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
 gi|24348149|gb|AAN55253.1|AE015663_3 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 287

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 109/225 (48%), Gaps = 27/225 (12%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           +LK  L+GI  F +++ KR  T + ++      K+ + LP+ L+ +     +  +L H  
Sbjct: 65  TLKLQLNGIHFFYEHVLKRDFTIQLSLP-----KRPHKLPQLLSCQD----IAALLYHCQ 115

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205
                 + +  A+L L YGCGLR+SE   +   +I   +  L++ QGKG   R V L P+
Sbjct: 116 ------NLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGACDRWVILSPT 169

Query: 206 VRKAILEYYDLC-PFDLNLNIQLPLFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTT 261
           +   + +Y+    P +        LF         PL+   F++ + +  R   +    +
Sbjct: 170 LLILLRQYWQAYHPVEW-------LFASTYHDVVYPLHESTFRKALAKAARLASITKPCS 222

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
            H+LRH++ATH L  G  L  +Q+ LGH  + +T+ Y + + + G
Sbjct: 223 PHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPELG 267


>gi|247663508|gb|ACT09079.1| IntI1 [Vibrio cholerae]
 gi|247663514|gb|ACT09082.1| IntI1 [Vibrio cholerae]
          Length = 313

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 124/302 (41%), Gaps = 58/302 (19%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YT 299
           YT
Sbjct: 312 YT 313


>gi|237801966|ref|ZP_04590427.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331024824|gb|EGI04880.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 318

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 125/293 (42%), Gaps = 37/293 (12%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W  N+   R     T ++Y+ D R F  F+     E+      R ++ + + A+ ++   
Sbjct: 31  WFANIRNPR-----TRRAYQADLRDFCSFVGLAGAEEF-----RAVNRSHVLAWRAQLER 80

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLVD 139
           + +   +++R L+ + S   YL        +N L   N     + P+   NE +   L D
Sbjct: 81  RALSGATIRRKLAALASLFDYL------LNNNALAGGNPVHGVARPKVETNEGKTPALGD 134

Query: 140 NV---LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194
           +    LL           R+ AIL +L   GLR  E   L   ++ + +    LRI GKG
Sbjct: 135 DQAKRLLDAPDAESLQGVRDRAILAVLLYHGLRREELSLLQTGDLQERRGVKHLRIHGKG 194

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR--- 251
            KIR +PL P   + I  Y  +   D  L     LFR  RGK    G+  + +  +    
Sbjct: 195 GKIRYLPLHPVAAERIYVYL-VRDGDRALTPG-ALFRSQRGKTSGTGITGKGVYGVVTKW 252

Query: 252 ------RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                 R  GL +    H LR + AT+ L +  D+  +Q  LGH  +STT++Y
Sbjct: 253 ASAAQIRVDGLGV----HGLRATAATNALEHDADIAKVQIWLGHANISTTRLY 301


>gi|296163768|ref|ZP_06846471.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295885989|gb|EFG65904.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 329

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 115/287 (40%), Gaps = 22/287 (7%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDR 86
           ER  S  T+ +Y    R  L F A  T +  +         + + AF+    R +K   R
Sbjct: 19  ERHASPCTVAAYRDTWRLLLGFCAKRTGKSPSALDFTDFDISLVCAFLDHLERDRKNSVR 78

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV----L 142
           +    L+ I S  +Y   R     + I  +  +     LP+   E+  +T +  V    L
Sbjct: 79  TRNARLAAIHSLFRYAALRHPEHAATIARVLAI-----LPKRF-ERAIVTFLTEVEVQAL 132

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVP 201
           L     T W   R+ A+L +    GLRISE + L   ++ +   + +  QGKG K RI P
Sbjct: 133 LAAPDRTLWSGRRDYAMLLVAVQTGLRISEVIGLLWTDVHLGAGAHVACQGKGRKDRITP 192

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           L   V K +  +   C      N    LF    G PL+    +R I           +T 
Sbjct: 193 LTVPVVKVLRVWLAEC----EANPAARLFPTRTGTPLSRDAIERRITLHAAKASAACATL 248

Query: 262 A------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           A      H LRH+ A  LL  G D   I   LGH  + TT IY + +
Sbjct: 249 ANKNVTFHVLRHTAAMRLLEAGVDPTVIALWLGHEHVDTTTIYLHAH 295


>gi|208743365|ref|YP_002267816.1| site-specific tyrosine recombinase XerS [Bacillus cereus]
          Length = 361

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 135/332 (40%), Gaps = 45/332 (13%)

Query: 16  KERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL-----AFYTEEKIT------IQT 62
           K +  W  ++  E++  LS  TL +Y  +  +FL +L     A    + +T      I T
Sbjct: 17  KSKMPWYIIEYAEMKTALSPATLYAYITEFEKFLKWLISNRLAVENGKVVTNICDVPIST 76

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +  L   E R F    + + I  R++ R+ S +KS  KYL +     +      RN+   
Sbjct: 77  LENLPLNEARTFQRYLQGEGIETRAINRTFSALKSLFKYLAQNTENEQGENYISRNVMDK 136

Query: 123 NSLPRA---------------LNEKQALTLVDNVLLHTSHETKWID-----------ARN 156
             L +                 NEK  +  +  +        K I             R+
Sbjct: 137 IELHKEKVDAAARADDVANMIFNEKDDVAFLQFLANDYGEMLKDISPKKYSFFQRDKERD 196

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
            AI+ L+ G GLR+SE  SLT  +I   Q  +++  KG+K   V    S    + EY  +
Sbjct: 197 IAIISLILGTGLRVSEVASLTISSINFRQGKVKVTRKGNKRSSVLATRSCLDDVQEYIKV 256

Query: 217 CPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQL--RRYLGLPLSTTAHTLRHSFATH 272
            P   N   +  L      +GK     V  R I++L  +         + H LRH++AT+
Sbjct: 257 RPSKYNCPQDEDLLFVTNYKGKYTQLTV--RAIQKLCDKYSSAFDEKRSPHKLRHTYATN 314

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
                 DL  ++  LGH  +  T IYTN+N++
Sbjct: 315 HYKENKDLVLLRDQLGHTSVEVTSIYTNINNE 346


>gi|206580735|ref|YP_002237616.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
 gi|206569793|gb|ACI11569.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
          Length = 308

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 99/235 (42%), Gaps = 33/235 (14%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           LSG++S  +Y   R +   + +  M   + +   P   ++ + ++L        +    W
Sbjct: 66  LSGLRSLYQYAVSRGLADTNPLPVMSPARPAAFEPYIYSQAELISL-----FKAAETVAW 120

Query: 152 IDARNSA----ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
                +     IL L+Y  GLR+SE +SL  +++   +  L++ Q K  K R+VP  P +
Sbjct: 121 ARTLYAGDLHLILLLIYSAGLRVSELISLNREDVGLKECVLKVRQSKFGKTRLVPFSPQL 180

Query: 207 RKAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA- 262
           R  +L     Y+            P F    G  +     Q Y R+LR   G+     A 
Sbjct: 181 RDKLLTVEARYN------TTECSTPFFVSHAGNRICTYTLQNYFRRLRNECGITRHDGAR 234

Query: 263 -----HTLRHSFATHLLS----NGGD----LRSIQSILGHFRLSTTQIYTNVNSK 304
                H LRHSFA H L+    NG D    L  +   LGH  L  TQ+Y ++  +
Sbjct: 235 YEPRIHDLRHSFAVHRLTSWYRNGDDVQLLLPQLSVYLGHVHLRATQVYLSMTPE 289


>gi|153951127|ref|YP_001398120.1| phage integrase family site specific recombinase [Campylobacter
           jejuni subsp. doylei 269.97]
 gi|152938573|gb|ABS43314.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. doylei 269.97]
          Length = 354

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 130/273 (47%), Gaps = 33/273 (12%)

Query: 45  QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK 104
           ++L F   Y+ ++I  + I      E+ A I    T  + D S K     + +F  +L K
Sbjct: 85  EYLNFYKLYSLKQIDEELI-----VEVLASI----TGALSDASKKNYRIAVINFFVFLDK 135

Query: 105 RKITTESNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
           +    E   +   NLK        K   LP  ++E++    +D +    + + K    RN
Sbjct: 136 QNEEDEKAHIFDINLKNWAGIAGSKGVKLPEFMSEEELKKFLDAI---ENADFKNNTIRN 192

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
             I+ ++   G+R+SEA+++   +I +  D   +RI+ KG+K R+V     ++K ++  Y
Sbjct: 193 KLIIKIIIFTGIRVSEAINIKIGDISEENDLYIIRIRAKGNKYRVVM----IKKELI--Y 246

Query: 215 DLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFA 270
           DL   ++++N       LF   +G PL      R + QL    G+      AH LRH+FA
Sbjct: 247 DLLK-NVSINYMSKDALLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLRHTFA 305

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           T L     DL  +Q  LGH  L+T++IYT+ ++
Sbjct: 306 TLLYKKQKDLVLVQEALGHASLNTSRIYTHFDN 338


>gi|30250123|ref|NP_842193.1| integron integrase [Nitrosomonas europaea ATCC 19718]
 gi|30139230|emb|CAD86100.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Nitrosomonas europaea ATCC 19718]
          Length = 323

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 95/182 (52%), Gaps = 37/182 (20%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKG--DKIRIVP--LLPSVRKAILEYYDL 216
           LLYG G+R+ E + L  +++  ++  + I+ GKG  D++ I+P  L+  ++  +L+   L
Sbjct: 133 LLYGTGMRLMECVRLRVKDVDFERGEILIRDGKGAKDRVTILPESLVSPLQTYLLQRRVL 192

Query: 217 CPFDLNL---NIQLP--------------LFRGI---------------RGKPLNPGVFQ 244
              D+ L   ++ LP              +++ I               R   ++  + Q
Sbjct: 193 FDDDIRLGKASVYLPDALERKYPNAATDWIWQYIFPSGSFSIDPRSSVERRHHIDEKLLQ 252

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R +++  +  G+    T HTLRHSFATHLL +G D+R+IQ +LGH  + TT IYT+V +K
Sbjct: 253 RAMKKAVQTSGITKLATPHTLRHSFATHLLDSGYDIRTIQELLGHKDVHTTMIYTHVLNK 312

Query: 305 NG 306
            G
Sbjct: 313 GG 314


>gi|168335500|ref|ZP_02693581.1| integrase family protein [Epulopiscium sp. 'N.t. morphotype B']
          Length = 351

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 130/307 (42%), Gaps = 32/307 (10%)

Query: 27  IERGLSKLTLQSYECDTRQFLIF-------LAFYTEEKITIQTIRQLSYTEIRAFI---- 75
           IE   S  T   Y  D R FL F       +      +IT+  I++LS   I  FI    
Sbjct: 34  IEHTTSSSTRLGYLYDLRIFLDFVIKSNLIMGKINRIEITVLDIQKLSPRNIEKFIVYLN 93

Query: 76  --------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNLKKSNSL 125
                     +   K  +R   R LS +K+  KY  KR I   +   ++ M    +   +
Sbjct: 94  SYEKIDIEGNKNIYKNSNRGKARKLSALKTMFKYFYKRGIINNNPVGVIEMPKRYEKTII 153

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNI 181
               +E + L  V       S   K        R+ AI+ LL G G+R+SE + L   ++
Sbjct: 154 KLDADEIEDLIFVVESGEQLSPAQKRYHTKTKIRDVAIICLLLGTGIRVSECVGLNINDV 213

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
               + ++I  KG    I+     V + +  YY++     + ++  PLF  ++ + ++  
Sbjct: 214 DFKYNGIKITRKGGNESIIYFSKEVEQGLKNYYEIRKEKSSKDLDEPLFLSLQNRRISTR 273

Query: 242 VFQRYIRQLRRYLGLPL---STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QI 297
           + +  +   ++Y GL     + T H LR ++ T L    GD+  +  ILGH  ++TT + 
Sbjct: 274 MVEVLV---KKYAGLITKLKTITPHRLRTTYGTRLYEETGDIYLVADILGHKDVNTTKKY 330

Query: 298 YTNVNSK 304
           Y N++ K
Sbjct: 331 YVNMDDK 337


>gi|290475364|ref|YP_003468252.1| integrase/recombinase [Xenorhabdus bovienii SS-2004]
 gi|289174685|emb|CBJ81481.1| Integrase/recombinase [Xenorhabdus bovienii SS-2004]
          Length = 305

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 112/219 (51%), Gaps = 24/219 (10%)

Query: 91  SLSGIKSFLKYLKKRKITTES--NILNMRNLKKSNSLP--RALNEKQALTLVDNVLLHTS 146
           +L G+   L+    ++I T+S  +I  +R+++  N LP  RAL+  +  TL         
Sbjct: 83  ALKGVA--LEAWTMKQIDTDSFQHIKQVRSVR-GNRLPKGRALDRYEIKTLF--FTCEND 137

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
             TK +  R++AI+ +L GCGLR SE +SL  ++++  +  LR+ GKG+K R+  +    
Sbjct: 138 FSTKGL--RDAAIIGVLVGCGLRRSEIISLDLKHVIRREQALRVMGKGNKERLSYMPEGT 195

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIR-------GKPLNPGVFQRYIRQLRRYLGLPLS 259
            + +  + D    ++  +   PLF  IR        +  +  ++  +I + RR       
Sbjct: 196 WERLNRWID----EIRGDYAGPLFTRIRRDDDVTDNRLSDQAIY--HILETRRIESGLEK 249

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              H LR +FA+ +L NG D+ +++  +GH  ++TTQ Y
Sbjct: 250 FAPHDLRRTFASAMLDNGEDIVTVKDAMGHSSITTTQKY 288


>gi|58616527|ref|YP_195656.1| putative integrase [Azoarcus sp. EbN1]
 gi|56315989|emb|CAI10632.1| putative integrase [Aromatoleum aromaticum EbN1]
          Length = 318

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 140/307 (45%), Gaps = 25/307 (8%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
            +P  ++ EL    + +  +L   RGLS  T +   C   + L+   F  +  + + T+R
Sbjct: 18  EIPAPIADEL----RRYDDHLRDVRGLSAGTRRD-RCRIVEQLLRKKF-ADGVVNMATLR 71

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES-----NILNMRNL 119
            +   ++R FI+++        +  +  S ++S+L+Y   R I  +S      +++    
Sbjct: 72  AV---DVRRFIARQLGDSPSHSAAAQLASALRSYLRY---RTICGDSVAGLNAVISSPVQ 125

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
            K  SLPRAL   Q        LL      +W   R  AI+      GLR  E  +L  +
Sbjct: 126 WKLASLPRALRPDQV-----QRLLGAFPYGRW-PRRGYAIVRCALDMGLRAGEIANLLIE 179

Query: 180 NIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           +I   + T+ ++G K  +  ++PL  +  +A+ +Y       ++        RG R  P+
Sbjct: 180 DIDWREGTVTLKGTKSRRQDVLPLPMATGQALADYLQHERPAISSRAIFLCRRGSRDIPI 239

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                Q  IR+  R +GLP S + H LRH+ A  L+ NG  L+ +  +L H  L TT+IY
Sbjct: 240 TTDAVQNVIRRACRRVGLPDSGS-HLLRHTLACRLVENGSSLKEVADVLRHRSLETTRIY 298

Query: 299 TNVNSKN 305
             +++ N
Sbjct: 299 AKLDTPN 305


>gi|308062001|gb|ADO03889.1| integrase-recombinase protein [Helicobacter pylori Cuz20]
          Length = 355

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 14/194 (7%)

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           N    N LP  LN ++    ++ +       +  + ARN  ++ ++   G+R +EAL L 
Sbjct: 157 NQSAGNKLPTHLNNEELEKFLEGI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 214

Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            ++   +    T+ I+GKGDK R V L    + S+ K  L   +L P   +L     LF 
Sbjct: 215 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLMERELYPVKNDL-----LFC 269

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +G  L      + + ++  + GL      AH LRHSFAT L     DL  +Q  LGH 
Sbjct: 270 NQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 329

Query: 291 RLSTTQIYTNVNSK 304
            L+T++IYT+ + +
Sbjct: 330 SLNTSRIYTHFDKQ 343


>gi|289806997|ref|ZP_06537626.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 232

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 90/184 (48%), Gaps = 11/184 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L +ER L++ TL +Y  D    + +L    +   T Q        +++  +++R
Sbjct: 9   EQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQA------DDLQTLLAER 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++ F ++L + K   +     + + K    LP+ L+E Q   L+
Sbjct: 63  VEGGYKATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG+K R
Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177

Query: 199 IVPL 202
           +VPL
Sbjct: 178 LVPL 181


>gi|218441747|ref|YP_002380076.1| integrase [Cyanothece sp. PCC 7424]
 gi|218174475|gb|ACK73208.1| integrase family protein [Cyanothece sp. PCC 7424]
          Length = 294

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 129/291 (44%), Gaps = 51/291 (17%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSL 88
           G SK +  +Y    +QFL ++          + +++L   +++ ++S    +Q+    +L
Sbjct: 33  GKSKTSQNTYASHIKQFLEYVG---------KPLKELKLEDMQLWVSSLENSQRYKTATL 83

Query: 89  KRSLSGIKSFLKYLKKR-----KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
           K  ++ +KS L + +K       I +     N +N   S    R L+E +  TL+     
Sbjct: 84  KLKINTVKSLLTFGQKVGYLQFNIGSAVKPPNPKNELSS----RMLSETEVTTLI----- 134

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVP 201
               E    + R+  IL L+Y CG+R+SE + L  ++++  ++     + GKG K R+V 
Sbjct: 135 ----EKANQNQRDRIILKLMYVCGMRVSEVVGLNWRDLVPNNNGGLAIVLGKGGKTRVV- 189

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQ-LP-----LFRGIRGKPLNPGVFQRYIRQLRRYLG 255
                         L P  L L+IQ LP     +F   +   ++       I+Q  +  G
Sbjct: 190 --------------LIPEKLWLDIQQLPKTDDAVFISRKKNRISRKTVHYMIKQYAKQAG 235

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +  + + H LRHS ATH +  G +L  +Q  LGH  LS T  Y +     G
Sbjct: 236 INGNVSPHWLRHSHATHSIERGCNLHLLQQSLGHSNLSITSRYLHARPNEG 286


>gi|186474603|ref|YP_001863574.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198562|gb|ACC76524.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 331

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 133/301 (44%), Gaps = 32/301 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ---TIRQLSYTEIRAF 74
           R+  L+ L  +R L++ T  SY  DT    + L + ++++ T     TI  LS + +R+F
Sbjct: 12  RRFLLEYLVTDRNLARNTQASYR-DT--LTLLLPYLSKDRKTSADRLTIDDLSPSLLRSF 68

Query: 75  ISKRRTQKIGDRSLKRS--LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           ++    ++ G   + R+  L+ I S  +++        +    +R      ++P     K
Sbjct: 69  LAYLEKER-GCSGVTRNTRLATIHSLARFIGMHSPEHVAWSAEIR------AIPFRKTPK 121

Query: 133 QALTLVD----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQST 187
             LT +D    + LL        +  R+ A+L  +Y  G R  E   LT  + ++    +
Sbjct: 122 ATLTYMDKPEIDALLQVPDIRTPLGRRDYALLLFMYNTGARADEVAHLTVGDCVLHGSLS 181

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRY 246
           +R+ GK +K R  PL   V         L PF         +F    G+PL   G++   
Sbjct: 182 VRLVGKANKARWCPLWADVADV------LRPFVAGRATHDFVFLNRLGQPLTRFGIYGLV 235

Query: 247 IRQLRRYLGLPLSTTA-----HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            R + R      S  A     H +RHS A HLL +G D+ +I++ LGH  L TT IY  V
Sbjct: 236 RRVVERAAETSPSLAAKQISPHCIRHSCAVHLLRSGNDINTIRAWLGHVSLDTTNIYAEV 295

Query: 302 N 302
           +
Sbjct: 296 D 296


>gi|217032477|ref|ZP_03437969.1| hypothetical protein HPB128_156g7 [Helicobacter pylori B128]
 gi|298736373|ref|YP_003728899.1| XerCD family integrase/recombinase [Helicobacter pylori B8]
 gi|216945823|gb|EEC24444.1| hypothetical protein HPB128_156g7 [Helicobacter pylori B128]
 gi|298355563|emb|CBI66435.1| integrase-recombinase protein (XerCD family) [Helicobacter pylori
           B8]
          Length = 355

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 94/194 (48%), Gaps = 14/194 (7%)

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           N    N LP  LN ++    ++++       +  + ARN  ++ ++   G+R +EAL L 
Sbjct: 157 NQSAGNKLPTHLNNEELEKFLESI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 214

Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            ++   +    T+ I+GKGDK R V L    + S+ K  L   +L P   +L     LF 
Sbjct: 215 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLIERELYPVKNDL-----LFC 269

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +G  L      + + ++  + GL      AH LRHSFAT L     DL  +Q  LGH 
Sbjct: 270 NQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 329

Query: 291 RLSTTQIYTNVNSK 304
            L+T++IYT+ + +
Sbjct: 330 SLNTSRIYTHFDKE 343


>gi|15645299|ref|NP_207469.1| integrase/recombinase (xerC) [Helicobacter pylori 26695]
 gi|2313795|gb|AAD07734.1| integrase/recombinase (xerC) [Helicobacter pylori 26695]
          Length = 362

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 94/194 (48%), Gaps = 14/194 (7%)

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           N    N LP  LN ++    ++++       +  + ARN  ++ ++   G+R +EAL L 
Sbjct: 164 NQSAGNKLPTHLNNEELEKFLESI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 221

Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            ++   +    T+ I+GKGDK R V L    + S+ K  L   +L P   +L     LF 
Sbjct: 222 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLIERELYPVKNDL-----LFC 276

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +G  L      + + ++  + GL      AH LRHSFAT L     DL  +Q  LGH 
Sbjct: 277 NQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 336

Query: 291 RLSTTQIYTNVNSK 304
            L+T++IYT+ + +
Sbjct: 337 SLNTSRIYTHFDKQ 350


>gi|77734445|emb|CAJ26229.1| integerase-recombinase [Thermotoga sp. KOL6]
          Length = 190

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 98/200 (49%), Gaps = 30/200 (15%)

Query: 92  LSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           L  +K++L + + +  +  E+   N     K + LP+A+  ++   +++ +  H  ++  
Sbjct: 19  LVVVKNYLNWKVDRGMMNVENRFWNEAEPPKHHVLPKAIEIEEVRKIIE-ICDHPMYK-- 75

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
                  AI  +L   G+RISE ++L  ++I ++D + +RI+GKG+K RI+ +    +  
Sbjct: 76  -------AIFKILANTGMRISELINLEKEDISLNDSARIRIKGKGNKERIINV---TKDL 125

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           I E  +   F+     + P  R I          QR +R+  R  G+    T H  RHSF
Sbjct: 126 IEELINSGFFE-----KKPSVRSI----------QRAVRRYARKAGIKKKVTPHVFRHSF 170

Query: 270 ATHLLSNGGDLRSIQSILGH 289
           A  L+  G  L  IQ++LGH
Sbjct: 171 AVALIERGVPLNKIQALLGH 190


>gi|146301413|ref|YP_001196004.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146155831|gb|ABQ06685.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 305

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 81/156 (51%), Gaps = 10/156 (6%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYY-D 215
           A+L + YGCGLR SE  SL  +++   +  L + QGKG+K R VP+  +V   + +Y  D
Sbjct: 144 ALLSIAYGCGLRRSEIASLDLKDVNLIKGMLVVRQGKGNKRREVPMSDTVLDYLTKYVRD 203

Query: 216 LCPFDL---NLNIQLPLF--RGIR--GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
             P  L   N N +      RG R  G+ LN  +  + I Q  ++  +    T H LRHS
Sbjct: 204 ERPERLTGRNQNEEAFFINSRGRRSTGENLNE-ILNKMIEQTGKFELVQKEITLHCLRHS 262

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            A HL  N   +  I++ LGH +++TT IY   N K
Sbjct: 263 IAYHLAENNAGIDFIRTFLGHTQINTTYIYAVQNKK 298


>gi|37520018|ref|NP_923395.1| integrase/recombinase [Gloeobacter violaceus PCC 7421]
 gi|35211010|dbj|BAC88390.1| integrase/recombinase [Gloeobacter violaceus PCC 7421]
          Length = 282

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 123/298 (41%), Gaps = 36/298 (12%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY--TEIRAFISKRRTQK 82
           LE ER L   T ++Y CD +Q+  +L          QT   L+    ++R+++ +   + 
Sbjct: 11  LERERRLQPATCRAYRCDLKQWFGYL----------QTANPLAARPEQLRSYLVQLGERG 60

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           IG  +L+R  S ++ F  YL ++ +        +         P  L  +Q   L+  V 
Sbjct: 61  IGHGTLRRKRSSLRVFYGYLHRQGVIAADPAAALPTETSRVPGPPPLRPQQLEALLGAV- 119

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
                        + A++  LY  GLR +E  +   +N+  ++   R+       R V L
Sbjct: 120 -----GDDACGVCHRALILALYAGGLRSAEVSAANLENLDWERGLWRL-----PQRDVLL 169

Query: 203 LPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            P +  A+L+Y       L   I +  LF   RG  L+    Q Y   L RY       T
Sbjct: 170 DPRLYAALLDYLRCGRPGLAAGIAERALFVSRRGHRLSVRALQAY---LSRY-----GVT 221

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           A  LR+S+A HLL  G D   +Q++LG   L +TQ             +  +YD  HP
Sbjct: 222 AQQLRNSYAAHLLEGGTDPVDVQALLG---LRSTQAAAG-RQPTVAQGLRRVYDLAHP 275


>gi|254779339|ref|YP_003057444.1| putative integrase/recombinase [Helicobacter pylori B38]
 gi|254001250|emb|CAX29225.1| Putative integrase/recombinase [Helicobacter pylori B38]
          Length = 356

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 94/194 (48%), Gaps = 14/194 (7%)

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           N    N LP  LN ++    ++++       +  + ARN  ++ ++   G+R +EAL L 
Sbjct: 158 NQSAGNKLPTHLNNEELEKFLESI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 215

Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            ++   +    T+ I+GKGDK R V L    + S+ K  L   +L P   +L     LF 
Sbjct: 216 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLIERELYPVKNDL-----LFC 270

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +G  L      + + ++  + GL      AH LRHSFAT L     DL  +Q  LGH 
Sbjct: 271 NQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 330

Query: 291 RLSTTQIYTNVNSK 304
            L+T++IYT+ + +
Sbjct: 331 SLNTSRIYTHFDKE 344


>gi|208434593|ref|YP_002266259.1| integrase-recombinase protein [Helicobacter pylori G27]
 gi|208432522|gb|ACI27393.1| integrase-recombinase protein [Helicobacter pylori G27]
          Length = 363

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 14/194 (7%)

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           N    N LP  LN ++    ++ +       +  + ARN  ++ ++   G+R +EAL L 
Sbjct: 165 NQSAGNKLPTHLNNEELEKFLEGI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 222

Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            ++   +    T+ I+GKGDK R V L    + S+ K  L   +L P   +L     LF 
Sbjct: 223 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLIERELYPVKNDL-----LFC 277

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +G  L      + + ++  + GL      AH LRHSFAT L     DL  +Q  LGH 
Sbjct: 278 NQKGNALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 337

Query: 291 RLSTTQIYTNVNSK 304
            L+T++IYT+ + +
Sbjct: 338 SLNTSRIYTHFDKE 351


>gi|18310790|ref|NP_562724.1| tyrosine recombinase XerD [Clostridium perfringens str. 13]
 gi|110799101|ref|YP_696492.1| tyrosine recombinase XerD [Clostridium perfringens ATCC 13124]
 gi|168206137|ref|ZP_02632142.1| tyrosine recombinase XerD [Clostridium perfringens E str. JGS1987]
 gi|168210828|ref|ZP_02636453.1| tyrosine recombinase XerD [Clostridium perfringens B str. ATCC
           3626]
 gi|168214383|ref|ZP_02640008.1| tyrosine recombinase XerD [Clostridium perfringens CPE str. F4969]
 gi|168215437|ref|ZP_02641062.1| tyrosine recombinase XerD [Clostridium perfringens NCTC 8239]
 gi|169343727|ref|ZP_02864726.1| tyrosine recombinase XerD [Clostridium perfringens C str. JGS1495]
 gi|182625652|ref|ZP_02953421.1| tyrosine recombinase XerD [Clostridium perfringens D str. JGS1721]
 gi|18145471|dbj|BAB81514.1| probable integrase/recombinase [Clostridium perfringens str. 13]
 gi|110673748|gb|ABG82735.1| tyrosine recombinase XerD [Clostridium perfringens ATCC 13124]
 gi|169298287|gb|EDS80377.1| tyrosine recombinase XerD [Clostridium perfringens C str. JGS1495]
 gi|170662459|gb|EDT15142.1| tyrosine recombinase XerD [Clostridium perfringens E str. JGS1987]
 gi|170711119|gb|EDT23301.1| tyrosine recombinase XerD [Clostridium perfringens B str. ATCC
           3626]
 gi|170714149|gb|EDT26331.1| tyrosine recombinase XerD [Clostridium perfringens CPE str. F4969]
 gi|177909054|gb|EDT71529.1| tyrosine recombinase XerD [Clostridium perfringens D str. JGS1721]
 gi|182382078|gb|EDT79557.1| tyrosine recombinase XerD [Clostridium perfringens NCTC 8239]
          Length = 290

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 136/286 (47%), Gaps = 18/286 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L+ + + +L+++    G  K T+ +Y  D   +L F+    EEK     + + SY  I 
Sbjct: 3   DLVSKYEVYLESI----GKRKNTVSAYITDVSMYLDFV----EEKGF--KVSEDSYPLI- 51

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +++   +       S++R++  +++F  +L   +   +   L M+  +     P  L  +
Sbjct: 52  SYVQHLKESHKSPSSIQRTIISLRNFYNFLVAEEFLKKVPNLTMKKERVEKKKPLVLTVE 111

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +      N ++++++       R+ A+L L+Y  G+++SE +SL  ++I  D S +  + 
Sbjct: 112 EI-----NKIMNSTNVLTEKGIRDKALLELMYATGMKVSELISLRIEDINLDSSFVNCRD 166

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
                R++P+  + ++++  Y  +   + N      LF  + G+P+      R +++   
Sbjct: 167 SRGYERLIPIGKAAKESLKRY--IVVREDNSKGSDKLFLNMSGEPITRQGVWRIVKEYAV 224

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              +      +T RHSFA HLL NG + + +Q +LG+  ++   +Y
Sbjct: 225 IANIGKDINLNTFRHSFAVHLLQNGANAKVVQELLGNQVMTYIDMY 270


>gi|291300674|ref|YP_003511952.1| integrase family protein [Stackebrandtia nassauensis DSM 44728]
 gi|290569894|gb|ADD42859.1| integrase family protein [Stackebrandtia nassauensis DSM 44728]
          Length = 345

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 29/240 (12%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S+ R+ S   +F  +L    I   + +  +   K +  LP+ L  + A   +   L+  +
Sbjct: 74  SIGRAWSVWNAFFSFLVGEGIVEGNPMSGVARPKAARPLPKPLRGEDAPDRLLEALMSGA 133

Query: 147 HETK--WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVP 201
              +  W   R+ A++ +L   GLR SE L+L   ++       R+    GKG   R+VP
Sbjct: 134 RAGRHPWPQ-RDVAVVAVLLLTGLRSSELLALRAGDVAGGAGERRLVVRDGKGGADRVVP 192

Query: 202 LLPSVRKAILEY------------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           +   +   + +Y            + L P +       PLF   RG+ L     Q  +RQ
Sbjct: 193 VEGPLEVLLADYLASRRGRFPGGRWPLAPSE-------PLFVDHRGEALTRNQLQYLVRQ 245

Query: 250 LRRYLGLPLSTT----AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             R+ G+  +       H LRH+FAT + ++G     +  +LGH  L+ +Q Y  V  + 
Sbjct: 246 CYRFAGVDDAVQRGALVHALRHTFATRVGASGASAMEVMELLGHRSLNASQGYLGVTGRE 305


>gi|253573841|ref|ZP_04851184.1| DNA integration/recombination/inversion protein [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251847369|gb|EES75374.1| DNA integration/recombination/inversion protein [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 356

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 138/321 (42%), Gaps = 51/321 (15%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEK--------ITIQTIRQLSYTEIRAFISKRR 79
           +R LS  TL +Y  D   ++IF  +   E+        + +  + +L+  EI +F++   
Sbjct: 32  KRKLSHTTLLNYCHD---YIIFFDWLVAERFAAPSRKDVELSVLEKLTVREIESFLTFLE 88

Query: 80  TQKIGDRSL--KRSLSGIKSFLKYLKKRKITT------ESNIL---NMRNLKKSNSLPRA 128
            Q +G+  L   R LS +KS   YL+ +  T       E N++       LK+S      
Sbjct: 89  YQ-LGNSKLTINRKLSALKSLFDYLQNKAETADLKPYLERNVMAKIEFNALKESQETIAN 147

Query: 129 LNEKQALTLVD------------------NVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
             E + L   D                  N  L   HE  +   R++AI+ L+ G GLR+
Sbjct: 148 RIEGKILRADDFELFRQFVAYDFGEQNRENKRLFQFHE--FNRERDTAIVSLILGSGLRL 205

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY-------YDLCPFDLNL 223
           SE   +  +++  ++  +R+  KG+K + V      +  +  Y       Y     +  L
Sbjct: 206 SEVAGINLEDLDMNKGLVRVIRKGNKEQYVYFSEQAKLDLENYIKIREARYKPEKSETYL 265

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
            +  P+ R  + + L P   ++ I +     G P + T H LRHSFAT       D+  +
Sbjct: 266 FMGAPIGRKGKNRRLTPRSIEKLIEKYATAFGKP-ALTVHALRHSFATRYHQENNDVPRL 324

Query: 284 QSILGHFRLSTTQIYTNVNSK 304
           ++ LGH  + TT IYT++  +
Sbjct: 325 KNQLGHASIQTTMIYTHLTDE 345


>gi|83722827|gb|ABC41685.1| integrase [uncultured bacterium]
          Length = 163

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 69/146 (47%), Gaps = 36/146 (24%)

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPF----DLNLN---IQLP--LFRGIRGKPLNPG- 241
           GKG+K R VPL  S+R  +L+  +   F    DL      + LP  L R      + PG 
Sbjct: 17  GKGNKDRRVPLPVSLRDRLLQQCERVLFQHQRDLAAGGGRVHLPNALAREYPSADVQPGW 76

Query: 242 --------------------------VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
                                     V QR I+Q R  + +    + HTLRH FATHLL 
Sbjct: 77  QYLFPSHRMSHDPRTGRRGRHHLSEEVLQRAIKQARLQVAILQPASCHTLRHCFATHLLD 136

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNV 301
            G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 137 AGCDIRTLQELLGHKDIATTQIYTHV 162


>gi|301166079|emb|CBW25653.1| putative integrase/recombinase [Bacteriovorax marinus SJ]
          Length = 366

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 99/195 (50%), Gaps = 24/195 (12%)

Query: 124 SLPRALNEK-QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           + P+  + K QA+T+ +   L T    K +D    +I Y+ Y  GLR  EAL +   +I 
Sbjct: 147 TFPKKTDRKLQAMTVGEITKLLTY--MKEVDHSWFSIFYVTYQFGLRHGEALGIKFSDID 204

Query: 183 DDQSTLRIQ---GKGDKI---------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
            +++ L IQ    K +KI         R VP+   VR+ +L+ Y     D  +  ++  +
Sbjct: 205 WERNHLFIQRAWKKKEKIWGPPKNGTSRFVPMNSQVREYLLKLYKGKHEDEFILPRIKKW 264

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
            G +G  +        +++++R++G+ L T  H+LR SF THLL  G D+ S+Q ++GH 
Sbjct: 265 EGGKGAEV--------LKEIQRHIGIKL-TNYHSLRASFITHLLRKGQDIISVQEMVGHK 315

Query: 291 RLSTTQIYTNVNSKN 305
            L TT  Y  ++  +
Sbjct: 316 ELKTTMGYIRLDGSD 330


>gi|10956379|ref|NP_052828.1| site-specific tyrosine recombinase XerS [Bacillus anthracis]
 gi|21392873|ref|NP_652953.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str.
           A2012]
 gi|47566509|ref|YP_022461.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str.
           'Ames Ancestor']
 gi|165873427|ref|ZP_02218026.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0488]
 gi|167636785|ref|ZP_02395068.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0442]
 gi|167642201|ref|ZP_02400423.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0193]
 gi|170689789|ref|ZP_02880959.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0465]
 gi|170709646|ref|ZP_02900046.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0389]
 gi|177656331|ref|ZP_02937224.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0174]
 gi|190569527|ref|ZP_03022388.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227811617|ref|YP_002811628.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. CDC 684]
 gi|229599771|ref|YP_002860851.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0248]
 gi|254687687|ref|ZP_05151543.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str.
           CNEVA-9066]
 gi|254739175|ref|ZP_05196877.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str.
           Western North America USA6153]
 gi|254744974|ref|ZP_05202651.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str.
           Kruger B]
 gi|254762469|ref|ZP_05214309.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str.
           Australia 94]
 gi|301068233|ref|YP_003787004.1| tyrosine recombinase [Bacillus anthracis CI]
 gi|4894348|gb|AAD32436.1| pXO1-132 [Bacillus anthracis]
 gi|20520260|gb|AAM26142.1| integrase/recombinase, phage integrase family, (pXO1-132) [Bacillus
           anthracis str. A2012]
 gi|47552324|gb|AAT35489.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|164710802|gb|EDR16380.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0488]
 gi|167509884|gb|EDR85308.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0193]
 gi|167527711|gb|EDR90550.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0442]
 gi|170125607|gb|EDS94534.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0389]
 gi|170666164|gb|EDT16957.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0465]
 gi|172079691|gb|EDT64808.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0174]
 gi|190559306|gb|EDV13330.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227007971|gb|ACP17713.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. CDC 684]
 gi|229269390|gb|ACQ51026.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0248]
 gi|300379318|gb|ADK08221.1| tyrosine recombinase [Bacillus cereus biovar anthracis str. CI]
          Length = 361

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 135/332 (40%), Gaps = 45/332 (13%)

Query: 16  KERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL-----AFYTEEKIT------IQT 62
           K +  W  ++  E++  LS  TL +Y  +  +FL +L     A    + +T      I T
Sbjct: 17  KSKMPWYIIEYAEMKTALSPATLYAYITEFEKFLKWLISNRLAVENGKVVTNICDVPIST 76

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +  L   E R F    + + I  R++ R+ S +KS  KYL +     +      RN+   
Sbjct: 77  LENLPLNEARTFQRYLQGEGIETRAINRTFSALKSLFKYLAQNTENEQGENYISRNVMDK 136

Query: 123 NSLPRA---------------LNEKQALTLVDNVLLHTSHETKWID-----------ARN 156
             L +                 NEK  +  +  +        K I             R+
Sbjct: 137 IELHKEKVDAAARADDVANMIFNEKDDVAFLQFLANDYGEMLKDISPKKYSFFQRDKERD 196

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
            AI+ L+ G GLR+SE  SLT  +I   Q  +++  KG+K   V    S    + EY  +
Sbjct: 197 IAIISLILGTGLRVSEVASLTISSINFRQGKVKVTRKGNKRSSVLATRSCLDDVQEYIKV 256

Query: 217 CPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQL--RRYLGLPLSTTAHTLRHSFATH 272
            P   N   +  L      +GK     V  R I++L  +         + H LRH++AT+
Sbjct: 257 RPSKYNCPQDEDLLFVTNYKGKYTQLTV--RAIQKLCDKYSSAFDEKRSPHKLRHTYATN 314

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
                 DL  ++  LGH  +  T IYTN+N++
Sbjct: 315 HYKENKDLVLLRDQLGHTSVEVTSIYTNINNE 346


>gi|152985119|ref|YP_001350673.1| integrase/recombinase [Pseudomonas aeruginosa PA7]
 gi|150960277|gb|ABR82302.1| integrase/recombinase (E2 protein) [Pseudomonas aeruginosa PA7]
          Length = 337

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 80/183 (43%), Gaps = 37/183 (20%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILE-------- 212
           LLYG G+RISE L L  +++  D  T+ + +GKG K R + L  S+   + E        
Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLALGLREQLARARAW 198

Query: 213 ----------------------------YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                                       +     F  + +   P    +R   +    FQ
Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V   
Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKV 318

Query: 305 NGG 307
            G 
Sbjct: 319 GGA 321


>gi|57234341|ref|YP_181631.1| phage integrase family site specific recombinase [Dehalococcoides
           ethenogenes 195]
 gi|57234884|ref|YP_181043.1| phage integrase family site specific recombinase [Dehalococcoides
           ethenogenes 195]
 gi|57234923|ref|YP_181020.1| phage integrase family site specific recombinase [Dehalococcoides
           ethenogenes 195]
 gi|57224789|gb|AAW39846.1| site-specific recombinase, phage integrase family [Dehalococcoides
           ethenogenes 195]
 gi|57225332|gb|AAW40389.1| site-specific recombinase, phage integrase family [Dehalococcoides
           ethenogenes 195]
 gi|57225371|gb|AAW40428.1| site-specific recombinase, phage integrase family [Dehalococcoides
           ethenogenes 195]
          Length = 319

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 132/294 (44%), Gaps = 22/294 (7%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           IVS  L +  + +L    +E  LS+ T+  Y     Q + ++       + +   ++++ 
Sbjct: 22  IVSTGLRRHLEAFLLACRVE-DLSRRTIFDYRQKIGQIIDYMV-----ALGLTDPKEVTA 75

Query: 69  TEIRAFI-SKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           + IR F+ +K+ T Q +      RS   IK F  +L +  + + S +  +R  K    + 
Sbjct: 76  SHIRGFLLTKQETCQPVSVHGYYRS---IKVFFNWLTREGVISFSPMAPIRPPKVPKKII 132

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R     +  +L     L        +  R+ AI+ +L   G+R+ E  ++   +I  D+ 
Sbjct: 133 RPYYPDELRSL-----LLACEGRGILSLRDRAIMLVLIDNGIRLGELANINISDIDVDRE 187

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           T+ + GKG K R+V +    + A+ +Y         ++    L+     K L P      
Sbjct: 188 TISVWGKGRKQRVVGISKRTQMAVYKY-----LHARVDNNPSLWVTTDSKTLTPKGIYLA 242

Query: 247 IRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           I +L    GL  +  + HT RH+ AT  + NGGDL  +QS+LGH  L+ T+ Y 
Sbjct: 243 IHRLGERAGLKDVRNSPHTFRHTAATLSIKNGGDLFQVQSMLGHTTLAMTRRYA 296


>gi|170726991|ref|YP_001761017.1| integron integrase [Shewanella woodyi ATCC 51908]
 gi|169812338|gb|ACA86922.1| integron integrase [Shewanella woodyi ATCC 51908]
          Length = 319

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 111/260 (42%), Gaps = 58/260 (22%)

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
           K+   + K++L  I    +++ K     E+  L     K    +P+ L+  +A  ++   
Sbjct: 63  KVSASTQKQALCAIIFACRHVLK----IETKELQFPYAKTPQRIPQVLSSDEAKLIIS-- 116

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIV 200
                    ++   +  I  +L+G GLR+ EAL L  ++I +  +S    QGKG K R+ 
Sbjct: 117 ---------FLSNYHHLIGSILFGAGLRLKEALRLRIKDIDLSTKSIFVYQGKGQKDRVC 167

Query: 201 PL-----------LPSVRKA----ILEYYDLCPFDLNLNIQLPLFRGIRGK--------- 236
            L           +  V+K     ++E + L    ++L   +  +R    K         
Sbjct: 168 MLPNGLVDELTLQMSHVKKIHDRDLVEGFGLASLPISL---IKKYRSSAAKFHWQYIFPA 224

Query: 237 ---------------PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
                           ++P  F R +R+           TAHT RHSFAT LL  G D+R
Sbjct: 225 SRRCIHPSDEYTCRHHIHPTAFSRELRKATTKSNTNKRVTAHTFRHSFATSLLLKGHDIR 284

Query: 282 SIQSILGHFRLSTTQIYTNV 301
           +IQ +LGH  + TTQIYT+V
Sbjct: 285 TIQELLGHSDVKTTQIYTHV 304


>gi|134045984|ref|YP_001097470.1| phage integrase family protein [Methanococcus maripaludis C5]
 gi|132663609|gb|ABO35255.1| phage integrase family protein [Methanococcus maripaludis C5]
          Length = 275

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 132/306 (43%), Gaps = 64/306 (20%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE----EKITIQTIRQLSYTEI 71
           K R+   + L+   GLS+ TL +Y+   +   IFL +Y +    E +TI+ I  + + E+
Sbjct: 4   KSRELVERYLKFCSGLSETTLVNYKSTMK---IFLNYYDDSLSFENLTIEDI--IEFFEV 58

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LN 130
             + + R T+    RSL R       F ++  K K  T + + +  N  K +   R  L 
Sbjct: 59  --YEASRNTKIYRIRSLNR-------FYEWANKHKYITGNPVRSFLNTLKPDKKERDYLT 109

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           +KQ+  L+ ++          ID             G+R+SE  ++   ++  ++ T+ I
Sbjct: 110 QKQSDDLLRSI----------IDVNFYIFTMFFIKTGVRVSEFQNILLDDVDFNEQTIFI 159

Query: 191 QG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------------LFRGIR 234
           +G KG K R V                  FDL++ I L                LF   R
Sbjct: 160 RGGKGRKDRFVF-----------------FDLDMGINLKRWLRERDILKPKAPNLFLNRR 202

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           GK +       YI  L    G  ++   T H LRH+FAT  +  G DLR++Q ILGH  +
Sbjct: 203 GKAIGKSSITHYINYLNDVYGKKVNKRITPHILRHTFATTCVDKGMDLRTLQDILGHEDI 262

Query: 293 STTQIY 298
            TT I+
Sbjct: 263 KTTSIF 268


>gi|254499439|ref|ZP_05112100.1| putative phage integrase family protein [Legionella drancourtii
           LLAP12]
 gi|254351338|gb|EET10212.1| putative phage integrase family protein [Legionella drancourtii
           LLAP12]
          Length = 326

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 138/294 (46%), Gaps = 25/294 (8%)

Query: 28  ERGLSKLTLQSYECDTRQFLIF-LAFYTEE----KITIQTIRQLSYTEIRAFISKRRTQK 82
           ++ LS+ ++ SY      F  + L FY +E    +IT   +R  +Y E  + I +R+   
Sbjct: 37  QQDLSESSISSYIQGINVFTTWALDFYQQEVCLLEITANDLR--AYREYVSKILRRKPST 94

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-PRALNEKQALTLVDNV 141
           I        +  +K F  +  K  +  ++    +  +K++ +  P ALN+ +    +  +
Sbjct: 95  INHH-----IQVLKRFYAWAAKTNLIPDNPASAIHFVKRATTTKPNALNKDE----IHAL 145

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL---RIQGKGDKIR 198
           L  +   T  +  RN AI+ LL   GLR+ E  +L  ++++  + +     + GKG K R
Sbjct: 146 LRASGLSTHGLALRNYAIVQLLLQSGLRVGELNNLLMKDVVIRERSGCVNVVDGKGRKHR 205

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP- 257
            +PL    R+A+  Y +      +L     LF   RG+       Q  I  L +   +  
Sbjct: 206 EIPLNSIARRALTRYLETRD---SLGSDDILFTTKRGEQGTIRALQALISSLAKRANITR 262

Query: 258 LSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           ++ TAHTLRH+FAT  L +N G L  +  ++GH  ++TT IYT  + +   + M
Sbjct: 263 INVTAHTLRHTFATQFLQANPGCLVELAMLMGHESVNTTAIYTKASKEKLAEHM 316


>gi|30908748|gb|AAP37606.1| IntI [uncultured bacterium]
          Length = 161

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 45/64 (70%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           ++P   Q+  ++  R   +P + + HTLRHSFATHLL +G D+R+IQ +LGH  +STT I
Sbjct: 98  VSPSSLQKVFKEALRKTRIPKNASPHTLRHSFATHLLQDGYDIRTIQDLLGHKEISTTMI 157

Query: 298 YTNV 301
           YT+V
Sbjct: 158 YTHV 161


>gi|89147436|gb|ABD62578.1| integrase [uncultured bacterium]
          Length = 163

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 42/57 (73%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R IR   R +GL    T+HT+RHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 106 RAIRNASRKIGLFKRVTSHTMRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|317180442|dbj|BAJ58228.1| integrase-recombinase protein [Helicobacter pylori F32]
          Length = 355

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 14/194 (7%)

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           N    N LP  LN ++    ++ +       +  + ARN  ++ ++   G+R +EAL L 
Sbjct: 157 NQSAGNKLPTHLNNEELEKFLEGI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 214

Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            ++   +    T+ I+GKGDK R V L    + S+ K  L   +L P   +L     LF 
Sbjct: 215 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLIERELYPVKNDL-----LFC 269

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +G  L      + + ++  + GL      AH LRHSFAT L     DL  +Q  LGH 
Sbjct: 270 NQKGDALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 329

Query: 291 RLSTTQIYTNVNSK 304
            L+T++IYT+ + +
Sbjct: 330 SLNTSRIYTHFDKQ 343


>gi|300869256|ref|ZP_07113849.1| Integrase family protein [Oscillatoria sp. PCC 6506]
 gi|300332747|emb|CBN59047.1| Integrase family protein [Oscillatoria sp. PCC 6506]
          Length = 281

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 117/274 (42%), Gaps = 32/274 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G SK T  SY   T + L F+       +T+  I+    T        +RT         
Sbjct: 20  GRSKNTAGSYRLHTSRLLSFVDNKPLSSVTLADIQAWELTLSNLSSGSQRT--------- 70

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEKQALTLVDNVLLHTSHE 148
            ++  IKS L +  K  +   +  L +R+    ++L  R L+E +   ++ +       E
Sbjct: 71  -AIFAIKSLLSFGHKLGVLPVNVGLLVRSRGVKDTLSERILSEAEVQAMIAS-------E 122

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKGDKIRIVPLLPS 205
           T   D RN  +L LLY  GLR+SE   L  +++ +       + I GKG+K R+V L P 
Sbjct: 123 T---DPRNRVMLRLLYSGGLRVSELCGLKWKDLKERPGAGGQVTIFGKGNKTRVVLLPPG 179

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           +   +++     P D       P+F   + G  L+     R ++      G+    + H 
Sbjct: 180 IWGGLIQLGPGQPDD-------PVFHSYLGGGHLHRSHLWRIVKAAAIRAGISDKVSPHW 232

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           LRH+ A+H L  G  +  +Q  LGH  L+T   Y
Sbjct: 233 LRHAHASHSLDRGAPIHLVQQTLGHSSLATITRY 266


>gi|261838090|gb|ACX97856.1| integrase/recombinase [Helicobacter pylori 51]
          Length = 355

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 14/194 (7%)

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           N    N LP  LN ++    ++ +       +  + ARN  ++ ++   G+R +EAL L 
Sbjct: 157 NQSAGNKLPTHLNNEELEKFLEGI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 214

Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            ++   +    T+ I+GKGDK R V L    + S+ K  L   +L P   +L     LF 
Sbjct: 215 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLMERELYPVKNDL-----LFC 269

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +G  L      + + ++  + GL      AH LRHSFAT L     DL  +Q  LGH 
Sbjct: 270 NQKGSALTQAYLYKQVERIINFSGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 329

Query: 291 RLSTTQIYTNVNSK 304
            L+T++IYT+ + +
Sbjct: 330 SLNTSRIYTHFDKQ 343


>gi|242348058|ref|YP_002995619.1| phage integrase family protein [Aeromonas hydrophila]
 gi|242348136|ref|YP_002995696.1| phage integrase family protein [Escherichia coli]
 gi|224831725|gb|ACN66857.1| phage integrase family protein [Escherichia coli]
 gi|224831877|gb|ACN67008.1| phage integrase family protein [Aeromonas hydrophila]
          Length = 334

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 126/260 (48%), Gaps = 32/260 (12%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK--------RKITT 109
           I  Q +R  +++ +R    +   Q + D    R+ + I ++L  LK         ++I T
Sbjct: 71  IGFQNLRDCAWSSMRRHHVQAVIQILSDSD--RAPATINTYLAALKGVALEAWTMKQIDT 128

Query: 110 ES--NILNMRNLKKSNSLP--RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
           +S  +I  +R+++ S  LP  RAL + +   L           +K +  R++AIL +L G
Sbjct: 129 DSYQHIKQVRSVRGSR-LPNGRALEKHEVRALY--FTCENDRSSKGL--RDAAILAVLVG 183

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           CGLR SE ++L  + ++  +  LR+ GKG+K RI  +     + ++ + +    ++    
Sbjct: 184 CGLRRSEVVALDMECVITREQALRVLGKGNKERIAYVPDGAWQRLMRWVN----EVRGEQ 239

Query: 226 QLPLFRGIR-------GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
              LF+ IR        +  +  ++  +I + RR          H LR +FA+ +L NG 
Sbjct: 240 PGALFQRIRRFDDVTADRMTDQAIY--HILETRRIEAGLEKFAPHDLRRTFASAMLDNGE 297

Query: 279 DLRSIQSILGHFRLSTTQIY 298
           D+ +++  +GH  ++TTQ Y
Sbjct: 298 DIITVKDAMGHASVTTTQKY 317


>gi|260770269|ref|ZP_05879202.1| integron integrase IntI4 [Vibrio furnissii CIP 102972]
 gi|260615607|gb|EEX40793.1| integron integrase IntI4 [Vibrio furnissii CIP 102972]
          Length = 329

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 96/226 (42%), Gaps = 49/226 (21%)

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
           L  R+ KK   LP  L   +   L              I A+      L+YG GLR+ E 
Sbjct: 91  LRFRHSKKQRKLPVVLTPTEIKKLFAA-----------IPAQTLLPYQLMYGSGLRLMET 139

Query: 174 LSLTPQNIMDDQSTLR-IQGKGDKIRIVPLL----PSVRKAILEYYDLCPFD-LNLN--- 224
           + L  ++I  D   +R  Q KG K R+V L     P +R  I     L   D LN N   
Sbjct: 140 IRLRVKDIDFDYGAIRGWQSKGGKSRVVTLAKELHPLLRFQIETVKHLYTQDQLNPNYDG 199

Query: 225 IQLP------------------LFRGIR-----GKP------LNPGVFQRYIRQLRRYLG 255
           +Q+P                  LF   +      KP      L+    Q+ I + R    
Sbjct: 200 VQMPNRLAEKYPSASKSLEWQFLFPAKQLCRYGDKPGWYRHHLHETTLQKTIIKARFTAE 259

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +    + HTLRHSFATHLL  G D+R++Q  LGH  + TTQIYT+V
Sbjct: 260 IAKPLSCHTLRHSFATHLLEAGADIRTVQEQLGHSDVKTTQIYTHV 305


>gi|89147406|gb|ABD62563.1| integrase [uncultured bacterium]
          Length = 163

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 48/69 (69%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R   ++  + Q+ +++  +  G+    + HTLRHSFATHLL +G D+R+IQ +LGH  +
Sbjct: 94  VRRHHVSEDILQQAVKRAVKRAGVTKRASCHTLRHSFATHLLEDGYDIRTIQELLGHADV 153

Query: 293 STTQIYTNV 301
           STTQIYT+V
Sbjct: 154 STTQIYTHV 162


>gi|308184464|ref|YP_003928597.1| integrase-recombinase protein [Helicobacter pylori SJM180]
 gi|308060384|gb|ADO02280.1| integrase-recombinase protein [Helicobacter pylori SJM180]
          Length = 356

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 14/194 (7%)

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           N    N LP  LN ++    ++ +       +  + ARN  ++ ++   G+R +EAL L 
Sbjct: 158 NQSAGNKLPTHLNNEELEKFLEGI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 215

Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            ++   +    T+ I+GKGDK R V L    + S+ K  L   +L P   +L     LF 
Sbjct: 216 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLIERELYPVKNDL-----LFC 270

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +G  L      + + ++  + GL      AH LRHSFAT L     DL  +Q  LGH 
Sbjct: 271 NQKGMALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 330

Query: 291 RLSTTQIYTNVNSK 304
            L+T++IYT+ + +
Sbjct: 331 SLNTSRIYTHFDKE 344


>gi|254417428|ref|ZP_05031169.1| site-specific recombinase, phage integrase family protein
           [Microcoleus chthonoplastes PCC 7420]
 gi|196175771|gb|EDX70794.1| site-specific recombinase, phage integrase family protein
           [Microcoleus chthonoplastes PCC 7420]
          Length = 319

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 128/285 (44%), Gaps = 36/285 (12%)

Query: 35  TLQSYECDTRQFLIFLAFYTEE--KITIQTIRQLSYTEI------RAFISKRRTQKIGDR 86
           T  +Y  D R F   +A   E   +I I+ +    +  +      +AF+ +   Q +   
Sbjct: 34  TRAAYGKDLRNFFFVVANTPEPTPQIVIEFLSLDRFAAVSLVLKYKAFLLE---QGLMPA 90

Query: 87  SLKRSLSGIKSFLKYLKK--RKITTESNILNMRNLKKSNSLPRALNEKQALTL--VDNVL 142
           ++ R L+ IKS +K+ +K  R   +  +I   RN        RA  +   + +     VL
Sbjct: 91  TVNRRLAAIKSLVKFARKIGRCNYSLEDIEGERN--------RAYRDTTGIDIKAFKRVL 142

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR-IVP 201
           +     TK    R+ AIL+LL+   LR SE +SL  ++   +  TL I GKG   R ++ 
Sbjct: 143 MECDRSTKK-GLRDYAILHLLWSNALRRSEVVSLDVKDFEPNNKTLTILGKGQASRQVIS 201

Query: 202 LLPSVRKAILEYYDL--CPFDLNLNIQLPLFRGI----RGKPLNPGVFQRYIRQLRRYLG 255
           +  +  +AIL + +   C     ++ + PLF  +    RG  L     ++ +    +  G
Sbjct: 202 ISEATTQAILAWLNERNC-----VDPKAPLFVAVSYNKRGNRLTGEALRQLVCLYCKKAG 256

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +    + H +RHS  TH L   GD+R +Q +  H +L T  IY +
Sbjct: 257 ISKQMSPHRIRHSSITHALDVTGDVRKVQGLSRHVKLETLMIYDD 301


>gi|223369814|gb|ACM88776.1| integrase [uncultured bacterium]
          Length = 163

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 16/105 (15%)

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP--GVFQRY----------IRQLRRYLGL 256
           AI   Y   P++       P +     + ++P  GV +R+          +++  R  G+
Sbjct: 62  AIARKYPRAPYEWGWKFVFPSY----SRSVDPRTGVLRRHHVYENYVIRGVKEAARGAGI 117

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 118 TKHVSCHTLRHSFATHLLENGYDIRTVQELLGHSDVSTTMIYTHV 162


>gi|89147671|gb|ABD62694.1| integrase [uncultured bacterium]
          Length = 163

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 46/69 (66%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R   L+  V QR ++   R  G+    + HTLRHSFATHLL +G D+R++Q +LGH  +
Sbjct: 94  VRRHHLDESVPQRAVKDAARAAGIIKRVSCHTLRHSFATHLLESGYDIRTVQELLGHSDV 153

Query: 293 STTQIYTNV 301
           STT IYT+V
Sbjct: 154 STTMIYTHV 162


>gi|227461203|gb|ACP39546.1| putative integron integrase [uncultured microorganism]
          Length = 310

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 82/179 (45%), Gaps = 37/179 (20%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKG--DKIRIVP--LLPSVRK------ 208
           ++LLYG G+R+ EAL L  +++  D+  L ++ GKG  D++ + P  LL  +R       
Sbjct: 132 VHLLYGTGMRLLEALRLRVKDVDFDRRELCVRDGKGGKDRMTVFPQVLLAPMRAHLAWRR 191

Query: 209 --------------------------AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
                                     A  E+     F  N     P+    R   L    
Sbjct: 192 TVFDEDSRRDMADVWLPDALAVKYPNAAREWGWQYVFVANRFSTDPVSGVARRHHLGESQ 251

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            Q+ +R      G+    + HTL HSFATHLL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 252 IQKLVRGAGIQAGVAKPVSPHTLHHSFATHLLESGADIRTVQELLGHANVSTTMIYTHV 310


>gi|326943669|gb|AEA19562.1| site-specific tyrosine recombinase XerS [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 332

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 116/287 (40%), Gaps = 52/287 (18%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           + I T+  L   E R F    + + I  R++ R+ S +KS  KYL           LN  
Sbjct: 43  VPISTLENLPLNEARTFQRYLQGEGIETRAINRTFSALKSLFKYL----------ALNTE 92

Query: 118 NLKKSNSLPRALNEKQAL-----------TLVDNVLLHTSHETKWID------------- 153
           N +  N + R + EK  L             V N++ +   +  ++              
Sbjct: 93  NEQGENYISRNVMEKIELHKEKVDAAARADDVANMIFNEKDDVAFLQFLANDYGEMLKDI 152

Query: 154 ------------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
                        R+ AI+ L+ G GLR+SE  SLT  +I   Q  +++  KG+K   V 
Sbjct: 153 SPKKYNFFQRDKERDIAIISLILGTGLRVSEVASLTISSINFRQGKVKVTRKGNKRSSVL 212

Query: 202 LLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQL--RRYLGLP 257
              S    I EY  + P   N   +  L      +GK     V  R I++L  +      
Sbjct: 213 ATRSCLDDIQEYIKVRPSKYNCPQDEDLLFVTNYKGKYTQLTV--RAIQKLCDKYSSAFD 270

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              + H LRH++AT+      DL  ++  LGH  +  T IYTN+N++
Sbjct: 271 EKRSPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNE 317


>gi|320161568|ref|YP_004174792.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
 gi|319995421|dbj|BAJ64192.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
          Length = 292

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 132/301 (43%), Gaps = 40/301 (13%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + WL+    E+  S +T++ Y  D  QF  +        + ++ +      E RA++   
Sbjct: 8   EAWLR----EQDRSDVTVRGYLADMSQFERWFEQTNGRGLRVEDVTPADVREYRAWLQT- 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSL-PRALNEKQALT 136
             QK    +++R L  ++++ ++ +   KI  E N      + +   L P  L   +   
Sbjct: 63  -VQKASAATIRRRLMALRAYCRWGMAAGKI--ERNPTARLKMPREEKLSPGWLERSEQWR 119

Query: 137 LVD----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ- 191
           LV      +    +   + +  R+ A++  L   GLR+SEA ++   ++   + +  +Q 
Sbjct: 120 LVREAERGIQAADTPARRRLAVRDWALVVFLLHTGLRVSEACAVEVSDVQMGERSGWVQV 179

Query: 192 --GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-----LNPGVFQ 244
             GKG K R VPL    R+A+  + +               RG  G+P     +     Q
Sbjct: 180 RSGKGAKARKVPLNAEARRALKAWLE--------------ERG--GQPGRMFEMTVSGVQ 223

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R + ++ R  G+ +    HTLRH+ A +L+  G  L+ + ++LGH  L+ T++Y     +
Sbjct: 224 RRLAEMGRRAGVEVHP--HTLRHTLAKNLVDAGVGLQEVAALLGHSSLNATRVYVTPGER 281

Query: 305 N 305
           +
Sbjct: 282 D 282


>gi|308063535|gb|ADO05422.1| integrase-recombinase protein [Helicobacter pylori Sat464]
          Length = 353

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 14/194 (7%)

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           N    N LP  LN ++    ++ +       +  + ARN  ++ ++   G+R +EAL L 
Sbjct: 157 NQSAGNKLPTHLNNEELEKFLEGI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 214

Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            ++   +    T+ I+GKGDK R V L    + S+ K  L   +L P   +L     LF 
Sbjct: 215 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLIERELYPVKNDL-----LFC 269

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +G  L      + + ++  + GL      AH LRHSFAT L     DL  +Q  LGH 
Sbjct: 270 NQKGNALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 329

Query: 291 RLSTTQIYTNVNSK 304
            L+T++IYT+ + +
Sbjct: 330 SLNTSRIYTHFDKQ 343


>gi|237717516|ref|ZP_04547997.1| phage integrase [Bacteroides sp. 2_2_4]
 gi|229453185|gb|EEO58976.1| phage integrase [Bacteroides sp. 2_2_4]
          Length = 343

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 136/305 (44%), Gaps = 35/305 (11%)

Query: 21  WLQNLEIE-----RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           WL+   IE     R LS+ T  SY    R  + +++      I    I  ++   I  F+
Sbjct: 15  WLRPFLIEYLIVTRNLSRNTQMSYRDTFRMLVSYVSTLISIAIDNLKISDITTDVITKFL 74

Query: 76  SKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRK---ITTESNILNMRNLKKSNSLPRALNE 131
                + K+   S    L+ IK+F K+L  +    I    ++  + + K    +   +++
Sbjct: 75  DYLEIERKVSVSSRNNRLAAIKAFAKFLAWKSPEHIDWCHHVSLIPSKKTEKRMITYMDK 134

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM----DDQST 187
            +   L D  L    ++   I +R+  I+  +Y  G R+SE + +  +++          
Sbjct: 135 SEIEALADAPLKTCKYQG--IRSRDHVIILFMYNTGARVSEVIGVKVKDVAMPPKRGMPM 192

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLP---LFRGIRGKPLNPGVF 243
           + + GKG K RI PL         +++DL  PF   ++ +LP   LF     +P++    
Sbjct: 193 VTLHGKGRKERICPLWE-------DFWDLLKPF---IDNKLPNDYLFLNRYNQPMSRFCI 242

Query: 244 QRYIRQLRRYLGLPLSTTA------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
              I++  + + L   + A      H +RH+ ATHLL++G D+  +++ +GH  + TT I
Sbjct: 243 YEMIKKYSQDVILNHPSLANKRPSPHVIRHTTATHLLNSGADIDMVRNWMGHSSIDTTNI 302

Query: 298 YTNVN 302
           Y  ++
Sbjct: 303 YAEIS 307


>gi|319649924|ref|ZP_08004074.1| phage integrase family domain-containing protein [Bacillus sp.
           2_A_57_CT2]
 gi|317398362|gb|EFV79050.1| phage integrase family domain-containing protein [Bacillus sp.
           2_A_57_CT2]
          Length = 304

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 128/285 (44%), Gaps = 13/285 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q++L + E  + ++  TL+SY+    Q   FL   TE ++    +++++   I+ FI   
Sbjct: 7   QDFLDDREF-KNVTPNTLESYKLIIGQLNDFL---TENEVV--NVQEVTPNHIKKFILHY 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE--KQALT 136
           + +     +    L  I++F  Y+ + +I T++    ++  K+   +    +   KQ L 
Sbjct: 61  QKKGNNATTTNSKLQRIRAFFNYMIECEIITQNPAKKIKKAKEDIKIDVFTDYHIKQMLN 120

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
               +      E  +   R+ +I+ +L G G+R+SE  +L   ++     TL + GK  K
Sbjct: 121 YYRRI---KQREKAFYAYRDHSIIVILIGTGIRLSEMTALKWSDVDFQNHTLSVFGKNRK 177

Query: 197 IRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
              +P+   V K +  Y   C  F    N+   +F     +PL P   +   ++L + + 
Sbjct: 178 RETMPITEKVVKELSAYKVYCEQFFGKENLHENIFTNRSSEPLTPDAVKNIFKRLSKIMN 237

Query: 256 LP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
              +  +AHT RH+F    +  G    ++Q ++ H  ++ T+ Y 
Sbjct: 238 FKDVRLSAHTFRHTFCQRCIHAGMSTFAVQRLMRHSSIAVTEKYA 282


>gi|326201175|ref|ZP_08191047.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
 gi|325988743|gb|EGD49567.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
          Length = 291

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 123/281 (43%), Gaps = 49/281 (17%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T+ S+  D  +F+ + A    +K   Q + Q    E R F+     +K    ++ R ++ 
Sbjct: 20  TISSFVSDVHEFVEWFAITYGKKFDCQVLEQ-DAREFRGFLLNILRRKPA--TINRKMAA 76

Query: 95  IKSFLKYLKKRKITTESNILNM-------RNLK-----KSNSLPRALNEKQALTLVDNVL 142
           +KSF ++L ++ ++ +  I  +       R +K     + N L RA+  K          
Sbjct: 77  LKSFNQFLVEKGLSKDIPIAGLLLADPSDREIKTLERTEQNKLKRAIYAKG--------- 127

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--------QGKG 194
                     + R+ AI  LLY  G+R+SE +SL+ +++   +    I        QGKG
Sbjct: 128 ----------NKRDIAIYELLYNIGVRVSELVSLSLEDVHLTERNGNINYSYVIIRQGKG 177

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K R  PL    R A+ EY       + ++    +F G RG PL      + +++     
Sbjct: 178 SKYRECPLNAQARSALDEY-----LKIRVSSSDNIFIGQRG-PLGREAVDKILKKYCADA 231

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           G+    ++H +RH+F T L+  G  L ++  + GH  + TT
Sbjct: 232 GID-RISSHVIRHTFCTRLIQEGVPLPTVSRLAGHSSVETT 271


>gi|89147596|gb|ABD62657.1| integrase [uncultured bacterium]
 gi|89147608|gb|ABD62663.1| integrase [uncultured bacterium]
          Length = 167

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 43/64 (67%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +  G  Q  +++  R  G+    T HTLRHSFATHLL NG D+R++Q +LGH  +STT I
Sbjct: 103 VEEGALQLAMKKAVRASGIQKPATCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMI 162

Query: 298 YTNV 301
           YT+V
Sbjct: 163 YTHV 166


>gi|145301320|ref|YP_001144160.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142856097|gb|ABO92412.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 315

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 120/257 (46%), Gaps = 26/257 (10%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK--------RKITT 109
           I  Q +R  ++  IR    +   Q + D    R+ + I ++L  LK         ++I T
Sbjct: 52  IGFQNLRDCAWESIRRHHVQAVIQMLSDSD--RAPATINTYLAALKGVALEAWTMKQIDT 109

Query: 110 ES--NILNMRNLKKSNSLP--RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
           +S  +I  +R+++ S  LP  RAL + +   L           +K +  R++AIL +L G
Sbjct: 110 DSYQHIKQVRSVRGSR-LPNGRALEKHEVRALY--FTCENDRSSKGL--RDAAILAVLVG 164

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC----PFDL 221
           CGLR SE ++L  + ++     LR+ GKG+K RI  +     + ++ + +      P  L
Sbjct: 165 CGLRRSEVVALDMECVITRDQALRVLGKGNKERIAYVPDGAWQRLMRWVEEVRGEQPGSL 224

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
              I+   F  +  + +        +   R   GL      H LR +FA+ +L NG D+ 
Sbjct: 225 FQRIR--RFDDVTAERMTDQAIYHILETRRIEAGLE-KFAPHDLRRTFASAMLDNGEDII 281

Query: 282 SIQSILGHFRLSTTQIY 298
           +++  +GH  ++TTQ Y
Sbjct: 282 TVKDAMGHASVTTTQKY 298


>gi|315638502|ref|ZP_07893679.1| phage integrase family site-specific recombinase [Campylobacter
           upsaliensis JV21]
 gi|315481493|gb|EFU72120.1| phage integrase family site-specific recombinase [Campylobacter
           upsaliensis JV21]
          Length = 355

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 134/284 (47%), Gaps = 32/284 (11%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y    ++   +L FY     +++ I +    EI A I    T  + D S K     +
Sbjct: 74  VSTYFNPLKKLFDYLTFYKLH--SLKQIDEALIVEILASI----TGALSDASKKNYRIAV 127

Query: 96  KSFLKYL-KKRKITTESNILNMRNLK--------KSNSLPRALNE---KQALTLVDNVLL 143
            +F  +L ++ +  ++++I ++ NLK        +   LP  ++E   K+ L  VDN   
Sbjct: 128 MNFFDFLNRQNEEDSKAHIFDI-NLKNWAGVSGARGIKLPEFMSEDELKKFLEAVDNA-- 184

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVP 201
               + K    RN  I+ ++   G+R+SEAL +  ++I ++     +RI  KG+K R+V 
Sbjct: 185 ----DFKANTIRNKLIIKIIIFTGIRVSEALHIKLKDISEEDGLYHIRIHAKGNKYRLVM 240

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLST 260
           +   +   +L+   +      L+    LF   +G PL      R + Q+    G+     
Sbjct: 241 IKKELISTLLDNVKINY----LSQDSLLFVNKKGTPLTQAYVSRIVEQILFKAGIRKQKN 296

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            AH LRH+FAT L     DL  +Q  LGH  L+T++IYT+ +S+
Sbjct: 297 GAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDSE 340


>gi|330468061|ref|YP_004405804.1| integrase family protein [Verrucosispora maris AB-18-032]
 gi|328811032|gb|AEB45204.1| integrase family protein [Verrucosispora maris AB-18-032]
          Length = 332

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 119/283 (42%), Gaps = 22/283 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE-IRAFISK 77
           + WL+N    R LS+ T  +Y  D   +L +      + + +  +    Y   + + +  
Sbjct: 27  EAWLRN----RRLSEHTRDAYRRDVANWLAWCTDRHLDPLRVNFLHVNEYARTLESTLVA 82

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN--LKKSNSLPRALNEKQAL 135
           R  + +   ++ R LS + S+  +L K +    + + +     + + +S    L   +  
Sbjct: 83  RTGRPLTPATVARRLSALSSWYDFLVKLRAVDTNPVADADRPRVDRDHSATIGLTPDE-- 140

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQSTLRIQGK 193
             VD +L     +T    ARN A + LL   GLR+ E  AL +T         ++R  GK
Sbjct: 141 --VDALLTAADADTGPTAARNRAAIALLADLGLRVGELVALDITDLGAERGHRSVRFVGK 198

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVFQRYIR 248
           G K R   L PS   A+  Y  L        +Q+     PL     G  L+     R +R
Sbjct: 199 GGKARRRALTPSTAHAVDTY--LAQRAAAEGVQVNELTGPLLVTASGARLDRHSVFRLVR 256

Query: 249 QLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           +L R   +P     + H+LRH+FAT   + G  L  +Q  +GH
Sbjct: 257 RLARSAQIPAWAHLSPHSLRHAFATTARAEGVPLEDVQDAMGH 299


>gi|163943259|ref|YP_001642489.1| site-specific tyrosine recombinase XerS [Bacillus
           weihenstephanensis KBAB4]
 gi|163865456|gb|ABY46514.1| integrase family protein [Bacillus weihenstephanensis KBAB4]
          Length = 368

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 138/332 (41%), Gaps = 49/332 (14%)

Query: 16  KERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL-----AFYTEEKIT------IQT 62
           KE+  W  ++ +E +  LS  TL  Y  +   FL +L     A    E +T      I T
Sbjct: 17  KEKMPWYIIEYIEEKTNLSPATLYGYLIEYEMFLQWLISSRLAVADGEVVTKIHEVPIDT 76

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +  L   +++ F S    Q    +++ R+ S +KS   YL              RN+   
Sbjct: 77  LEHLPLKQVKRFKSYLERQGNKTKAVIRTFSALKSLFYYLTSNTEDDNGECYFYRNVMAK 136

Query: 123 NSLPRA-LNEKQALTLVDNVLLHTSHETKWID-------------------------ARN 156
             + +  ++       +  V+ H + + K++                           R+
Sbjct: 137 MEIHKEKIDAAARAKEISEVIFHNNDDIKFMRFLSNEYEQMLQENAPGKLRFFKRDRERD 196

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
            AIL L+ G GLR+SEA SLT  ++      +++  KGDK   +    +    + EY  +
Sbjct: 197 IAILSLILGTGLRVSEAASLTISSVNFRTRYIKVVRKGDKKSAILATQTALDDVQEYLKV 256

Query: 217 ------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
                 CP D ++ + +  ++G   + ++    Q++  +  R        + H LRH++A
Sbjct: 257 RAVRYKCPEDEDI-LFVTNYKGSYAQ-ISVNAIQKFTEKYTR--AFDEKKSPHKLRHTYA 312

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           T+  +   DL  + + +GH  + TT +YTN++
Sbjct: 313 TNHYNENKDLVLLANQMGHNSMETTSLYTNID 344


>gi|88799619|ref|ZP_01115195.1| integrase/recombinase (XerC/CodV family) protein [Reinekea sp.
           MED297]
 gi|88777704|gb|EAR08903.1| integrase/recombinase (XerC/CodV family) protein [Reinekea sp.
           MED297]
          Length = 332

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 132/312 (42%), Gaps = 63/312 (20%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-LSYTEIRAFISKRRTQKIGDRS 87
           RGL+  T ++Y    ++++ F  + + +   +Q I   L+Y   + F S   TQ     +
Sbjct: 31  RGLAYATEKTYLLWAKRYIRFSKYQSPKDFKLQDIDSFLNYLAQQRFCSPN-TQATALNA 89

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           L   +   + FL +        ++  L+    K+   +P  L++ +A  ++         
Sbjct: 90  L---ILLYREFLGF--------DTTGLDFNYAKRRPKIPTVLSKSEADAIIQE------- 131

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPS- 205
               +      +  L+YG GLRISEAL+L  ++I   +     ++ KGDK R   LLPS 
Sbjct: 132 ----LGGVQKLVTQLMYGSGLRISEALNLRVKDIDFANGGLFVMEAKGDKSRRT-LLPSS 186

Query: 206 ----------------------------VRKAILEYYDLCPFDLNLNIQLP-------LF 230
                                       +  A+   +    F+L      P         
Sbjct: 187 LHQSLTSQIAFVEHTFEADQSIGKAGVYLPDALSRKWPNAQFELGWQYLFPSNVYSVDPR 246

Query: 231 RGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
            G+ R   ++    QR I++  + L +    + HT RHSFAT LL  G D+R+IQ ILGH
Sbjct: 247 SGVERRHHISRDQVQRAIKRAVKGLKINKRVSCHTFRHSFATELLRQGTDIRNIQEILGH 306

Query: 290 FRLSTTQIYTNV 301
             + TTQIYT+V
Sbjct: 307 SSVETTQIYTHV 318


>gi|283479604|emb|CAY75520.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 345

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 120/252 (47%), Gaps = 18/252 (7%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLVD 139
           + +  R+ + +L  ++ + ++L K+ +   +   ++   +    LPR  L+ +Q   +V+
Sbjct: 98  EPLSPRTQRTALQPLQVWFRWLAKQNLILANPAADLELPRLEKHLPRTILSVEQVEDIVN 157

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR 198
              L+T         R+ A+L LL+  G+R  E   L   +    +  L I QGKG + R
Sbjct: 158 LCDLNTLQ-----GMRDRALLELLWSTGIRRGEVARLETWSADFSRKILTIVQGKGKQDR 212

Query: 199 IVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLF---RGIRGKPLNPGVFQRYIRQLRRYL 254
           ++P+       +  Y +++ P  + +     LF    G+ G   N G+    +  LR   
Sbjct: 213 VIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVAGLTAN-GITHAVVPYLR-AA 270

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+    +    RH+ AT +L NG DLR IQ++LGH  + +TQ YT V+ +     +  ++
Sbjct: 271 GIE-KGSCXLFRHAMATQMLENGADLRWIQAMLGHRSVESTQXYTQVSIRA----LQAVH 325

Query: 315 DQTHPSITQKDK 326
             THP+   +D+
Sbjct: 326 ASTHPAEQTEDE 337


>gi|317177489|dbj|BAJ55278.1| integrase-recombinase protein [Helicobacter pylori F16]
 gi|317177493|dbj|BAJ55282.1| integrase-recombinase protein [Helicobacter pylori F16]
          Length = 355

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 81/160 (50%), Gaps = 12/160 (7%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPL----LPS 205
           + ARN  ++ ++   G+R +EAL L  ++   +    T+ I+GKGDK R V L    + S
Sbjct: 189 VHARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLKAFHIES 248

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHT 264
           + K  L   +L P   +L     LF   +G  L      + + ++  + GL      AH 
Sbjct: 249 LLKEWLMERELYPVKNDL-----LFCNQKGSALTQAYLYKQVERIINFAGLRREKNGAHM 303

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           LRHSFAT L     DL  +Q  LGH  L+T++IYT+ + +
Sbjct: 304 LRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQ 343


>gi|189036180|gb|ACD75440.1| AMDV4_11 [uncultured virus]
          Length = 210

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 20/165 (12%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----QGKG------DKIRIVPLLPSVRK 208
           ++  LY  G RI E L + P +I    +++R+    QGK       +K RI+PL   +R 
Sbjct: 55  LVQFLYRTGARIDEVLIVKPSDINLGTNSIRMKTLKQGKDKNGIQREKYRIIPLHSELRD 114

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           A ++Y  L   +++   + PLF      P++  V   Y ++++  LG  +   AH  RH+
Sbjct: 115 AYMQY--LLDMNISTKSEDPLF------PMSRQVVDLYFKKMQDKLGFKVH--AHKFRHT 164

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           FA   + +   L  +Q  LGH  + TT IYT +   +  ++M  I
Sbjct: 165 FAVKAIMDNVPLNVLQQWLGHSSIFTTSIYTQITGMDTSEFMGRI 209


>gi|331091113|ref|ZP_08339955.1| hypothetical protein HMPREF9477_00598 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405335|gb|EGG84871.1| hypothetical protein HMPREF9477_00598 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 353

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 133/296 (44%), Gaps = 29/296 (9%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFL----AFYTEEKIT---IQTIRQLSYTEIRAF----- 74
           IE   S  T  SY  D R F  FL      Y   K+T   +  + +++  +I  +     
Sbjct: 38  IEPTTSVKTRISYAYDIRIFFKFLLENNPVYKSYKMTDFQVSDLERIAPVDIEEYQEYLK 97

Query: 75  ISKRRTQKI--GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK-KSNSLPRALNE 131
           + +   ++I   ++ L R +S ++SF  Y  K ++  ++  L +   K    ++ R   +
Sbjct: 98  VYQNEDKQITNAEKGLARKMSALRSFYNYYYKHQMIEKNPSLFVDMPKIHDKAIVRLDTD 157

Query: 132 KQALTL--VDNVLLHTSHETKWIDARNS----AILYLLYGCGLRISEALSLTPQNIMDDQ 185
           + AL L  V+N     + + K    +N     AIL LL G G+R+SE + L   +I    
Sbjct: 158 EVALLLEYVENCGNQLTGQKKVYYEKNKTRDLAILTLLLGTGIRVSECVGLDIPDIDFKN 217

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNP 240
           + +++  KG    +V   P VRKA+++Y +     + P   + N    LF   + K +  
Sbjct: 218 NGIKVMRKGGNEMVVYFGPEVRKALIDYLETTRNTITPLPEHEN---ALFLSTQKKRMGV 274

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
              +  +++  R +      T H LR ++ T L    GD+  +  +LGH  ++TT+
Sbjct: 275 QAVENMVKKYAREVTPNKKITPHKLRSTYGTSLYKETGDIYLVADVLGHRDVNTTK 330


>gi|169838713|ref|ZP_02871901.1| recombinase [candidate division TM7 single-cell isolate TM7a]
          Length = 222

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 98/212 (46%), Gaps = 13/212 (6%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           +S IK+F K+    +   +     +R+LK+    P  L  ++   +VD      S     
Sbjct: 5   VSAIKAFYKFCYLNRAVEKDPAGMVRSLKREYRSPEILTLEEIKKIVD------SCPNMP 58

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQGKGDKIRIVPLLPSVRKAI 210
              +N  I+  L   G RISE L+L  +++ + +   +++ GK  K RIVP+  S+   I
Sbjct: 59  EGMQNRLIIKFLIATGARISEILNLEIKDLENKKYEFIKVLGKDSKYRIVPIYDSLENEI 118

Query: 211 LEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
             Y D+  P   N N    +F   R +      F + ++ + +  G+  +   H  R+S 
Sbjct: 119 KNYLDVYRPKLKNANDSFKIFPNARREK-----FWKDLKNIAKNAGIEKNVYPHIFRYSL 173

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           A  LL +  D R +Q I G+  ++TT+  T+V
Sbjct: 174 AEILLGDNADTRIVQEIFGYASITTTETCTHV 205


>gi|310813961|gb|ADP30788.1| IntI1 [Serratia rubidaea]
          Length = 313

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 123/302 (40%), Gaps = 58/302 (19%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT  L +G D+R++Q +LGH  +STT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATAFLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YT 299
           YT
Sbjct: 312 YT 313


>gi|227529183|ref|ZP_03959232.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus
           vaginalis ATCC 49540]
 gi|227350908|gb|EEJ41199.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus
           vaginalis ATCC 49540]
          Length = 292

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 143/304 (47%), Gaps = 24/304 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI-TIQTIRQLSYTEIRAFISKR 78
           +++  L  ++G S+ T +SY  D  +     AF+T   I T Q + Q +   +   I++ 
Sbjct: 7   HFIDYLMTQKGRSQNTRESYRHDLERCA---AFFTASGINTWQEVDQYAVINV---IAEM 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRALNEKQALT 136
           + +     ++ R++S ++   +YL +R    + N ++  +L++  +   P  L++++   
Sbjct: 61  KREDRASTTINRTISSLRQLYRYLLRRH-EVQVNPMDYIDLEEVATRKAPVTLSQQEI-- 117

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
                L      T     R+  +L L+YG G+ +SE ++L    +  D   L++Q     
Sbjct: 118 ---EQLFAIPDTTTVNGLRDRTLLELMYGTGMLVSELINLKRSQVHFDLQILQLQDNPRH 174

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            RIVPL    ++ +  Y      D +  + L   RG  G+    GV++ + +++ R  GL
Sbjct: 175 QRIVPLGKIAKEWLARYLRATAGDSSDYVFLNA-RG--GQMTRQGVWKNF-KEIVRKSGL 230

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILG-HFRLSTTQIYTNVNSKNGGDWMMEIYD 315
               T  TLRH+F   LL NG   +++Q++LG      + + Y   N++     ++ IY 
Sbjct: 231 SKKITLQTLRHTFTADLLKNGASWQAVQTLLGRETGRESFESYIRFNTQE----LVTIYR 286

Query: 316 QTHP 319
           + HP
Sbjct: 287 RCHP 290


>gi|223932948|ref|ZP_03624943.1| integrase family protein [Streptococcus suis 89/1591]
 gi|223898394|gb|EEF64760.1| integrase family protein [Streptococcus suis 89/1591]
          Length = 175

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 81/159 (50%), Gaps = 5/159 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           RN  ++ LL   GLRISE  +L   NI  +  T++I  KG K+R++ +      ++LE Y
Sbjct: 2   RNLLLISLLLSTGLRISELCNLKLDNINLENRTIQILEKGKKVRLLYIGNDETLSLLEDY 61

Query: 215 DLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                  + +    LF  ++    L     +  ++ +   L L    T H  RHSFAT L
Sbjct: 62  ----IAHHCSHSSYLFTSVKNDDHLKEQSVRLSLKNISHSLQLKKHITPHMFRHSFATML 117

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           L NG D+R IQ +LGH  ++ TQIYT+V+     + + E
Sbjct: 118 LDNGVDIRQIQHLLGHSNINVTQIYTHVSQSKQVEILSE 156


>gi|241992519|gb|ACS73597.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 82/177 (46%), Gaps = 37/177 (20%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207
           LLY  G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R         
Sbjct: 139 LLYRTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198

Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                                  +A   +     F  + +   P    +R   +    FQ
Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|300723172|ref|YP_003712470.1| integrase/recombinase [Xenorhabdus nematophila ATCC 19061]
 gi|297629687|emb|CBJ90293.1| Integrase/recombinase [Xenorhabdus nematophila ATCC 19061]
          Length = 338

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 77/151 (50%), Gaps = 13/151 (8%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R++AI+ +L GCGLR SE +SL  ++I+  +  LR+ GKG+K R+  +       +  + 
Sbjct: 177 RDAAIIGVLLGCGLRRSEIVSLDMKHIIRREQALRVMGKGNKERLSYMPEGTWDRLTRWV 236

Query: 215 DLCPFDLNLNIQLPLFRGIR-------GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           D    D       PLF  IR        +  +  ++  +I + RR          H LR 
Sbjct: 237 DEVRGDH----AGPLFTRIRRHDDVTDNRLSDQAIY--HILETRRIESGVEKFAPHDLRR 290

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +FA+ +L NG D+ +++  +GH  ++TTQ Y
Sbjct: 291 TFASAMLDNGEDIVTVKDAMGHSSITTTQKY 321


>gi|226366647|ref|YP_002784430.1| tyrosine recombinase [Rhodococcus opacus B4]
 gi|226245137|dbj|BAH55485.1| putative tyrosine recombinase [Rhodococcus opacus B4]
          Length = 307

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 122/281 (43%), Gaps = 30/281 (10%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S++T Q Y    R FL  +A    +      + QLS  ++R++++    ++   +SLK  
Sbjct: 31  SEMTRQCYTRHARAFLNTVA----QSAAAVDLEQLSGPQVRSYVTDL-GERYAPQSLKLK 85

Query: 92  LSGIKSFLKY--LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
            + ++ FL++  +  +  +  +  +      +S  +P+AL+  + + L+     HT   T
Sbjct: 86  ATALRIFLRFAWMSGQMSSDLTGAVGPVITHRSGKIPKALHPDELVRLLAAPDRHTLGGT 145

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
                R+ A+L L+   G R  E   L   +I    + +R++ KG  +  +P+   V  A
Sbjct: 146 -----RDYALLVLMSRLGFRAGEVGGLRLDDIDWAHAKVRVRVKGGNVLELPIPGDVGSA 200

Query: 210 ILEYYDLCP--------FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           ++EY    P        F  N    +P+ RG            + + +  R  GL +   
Sbjct: 201 LVEYLQRRPTPTPHREVFLTNYGAPVPMTRG---------AVTQVVERNARTAGLGM-VH 250

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           AH LRHS A  +L  GG    +  +LGH     T  Y++ +
Sbjct: 251 AHRLRHSAARAVLVGGGTFEEVGELLGHATRQVTMAYSSFD 291


>gi|229092873|ref|ZP_04224007.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-42]
 gi|228690495|gb|EEL44278.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-42]
          Length = 204

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 94/182 (51%), Gaps = 12/182 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R +++  
Sbjct: 8   QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDITYADVRLYLTTL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137
             +K+  +S+ R +S ++S  ++L  R+   + N   + +L KK  S+P+ L  ++    
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFAIASLPKKELSIPKFLYAEEL--- 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               L   S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GK  K 
Sbjct: 119 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKRKKT 176

Query: 198 RI 199
           +I
Sbjct: 177 KI 178


>gi|160875127|ref|YP_001554443.1| integrase family protein [Shewanella baltica OS195]
 gi|160875848|ref|YP_001555164.1| integrase family protein [Shewanella baltica OS195]
 gi|160860649|gb|ABX49183.1| integrase family protein [Shewanella baltica OS195]
 gi|160861370|gb|ABX49904.1| integrase family protein [Shewanella baltica OS195]
 gi|315267318|gb|ADT94171.1| integrase family protein [Shewanella baltica OS678]
          Length = 287

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 131/280 (46%), Gaps = 29/280 (10%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS-LKRS 91
           +++L+ Y   TR   ++ A    +    Q    ++  ++ A+      ++   R+ LK  
Sbjct: 11  EISLRGYSARTRNAYLY-AITQLQHYANQPFDNITDEQLTAYFRYLNLERHHSRATLKLQ 69

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L+GI  F +++  R  T + ++      K+ + LP+ L+ +     +  +L H       
Sbjct: 70  LNGIHFFYEHVLGRDFTVQLSLP-----KRPHKLPQLLSCQD----IAALLCHCQ----- 115

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210
            + +  A+L L YGCGLR+SE   +   +I   +  L++ QGKG   R+V + P++   +
Sbjct: 116 -NLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGAYDRLVIISPTLLTLL 174

Query: 211 LEYY-DLCPFDLNLNIQLPLFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            +Y+    P +        LF         PL+   F++ + +  R   +    + H+LR
Sbjct: 175 RQYWRAYHPVEW-------LFASTYHDVVYPLHESTFRKALAKAARLASITKPCSPHSLR 227

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           H++ATH L  G  L  +Q+ LGH  + +T+ Y + + + G
Sbjct: 228 HAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPELG 267


>gi|254446471|ref|ZP_05059947.1| integron integrase subfamily [Verrucomicrobiae bacterium DG1235]
 gi|198260779|gb|EDY85087.1| integron integrase subfamily [Verrucomicrobiae bacterium DG1235]
          Length = 422

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 107/248 (43%), Gaps = 53/248 (21%)

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           + S +    +++ KR+      ++  R   ++  +P  L+  +    VD V    +H   
Sbjct: 174 AFSALLFLFRHVLKRRFEGFEGVVRAR---RTKYIPVVLSRAE----VDAVFEQLTHP-- 224

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLP----- 204
             D        L+YGCGLR+ E +++   ++      L +  GKG K R VPL P     
Sbjct: 225 -FDLATR----LMYGCGLRLFEVVNVRVGSLNFGAGILTVHDGKGRKDRTVPL-PRCLMQ 278

Query: 205 ----SVRKAILEY-------YD--LCPFDLN-----LNIQLP-----------LFRGI-- 233
                VR+  ++        +D    P  ++     L  +LP           L RG   
Sbjct: 279 DLERQVRRVRIQLGRDIEGGFDGVFMPGSMDRKGGSLAKELPWQWLFPYRKLTLVRGTEE 338

Query: 234 -RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
            R    +       IR+  R +GL    TAHT RHSFA+HLL    D+R+IQ +LGH  L
Sbjct: 339 RRRYHAHEKKLGAAIREAARRVGLAKRVTAHTFRHSFASHLLEANYDIRTIQELLGHSSL 398

Query: 293 STTQIYTN 300
            TT IYT+
Sbjct: 399 ETTMIYTH 406


>gi|297620069|ref|YP_003708174.1| integrase family protein [Methanococcus voltae A3]
 gi|297379046|gb|ADI37201.1| integrase family protein [Methanococcus voltae A3]
          Length = 320

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 131/294 (44%), Gaps = 29/294 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W+     ER   ++   + + D  +  +FLAF  +      T+ +  +T+   ++   R 
Sbjct: 26  WIAQFREEREFDRIKENTIKSDISRLKVFLAFCKKLDKEPDTLNRSEFTKFFNYLENER- 84

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKI------TTESNILNMRNLKKSNSL-PRALNEKQ 133
            K+G+ S+ +    +K F + L+            E    +   +K  +S+  + LNE  
Sbjct: 85  -KLGN-SVIQYFKLLKVFYRVLRLHNFKEFETECKERRRFSKFEVKHYDSIDSKILNE-- 140

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG- 192
              ++  +L H S      + R++ ++ +L+  G R+SE + +T ++    ++  RI+  
Sbjct: 141 ---ILKAILQHRSRS----NLRDALMIRMLWDTGCRVSEVIGITYEDCDFKEAKFRIRNT 193

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQRYIR 248
           K    R V        A+ EY     +++N     P+F+ IRG P+  G    V++  + 
Sbjct: 194 KSSNERFVVCSSDTLNALKEY---VKYNVNTGNSDPIFQSIRGGPVRRGWLSQVYRNAVV 250

Query: 249 QLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +L+    +P +     H+LRH  A  LL+ G  +  ++  LGH  + TT  Y +
Sbjct: 251 KLKEQGKIPKNRRVVVHSLRHGRAVELLNKGVPIEVVKEYLGHSSIETTLFYAH 304


>gi|284031468|ref|YP_003381399.1| integrase family protein [Kribbella flavida DSM 17836]
 gi|283810761|gb|ADB32600.1| integrase family protein [Kribbella flavida DSM 17836]
          Length = 318

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 75/162 (46%), Gaps = 13/162 (8%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR--IQGKGDKIRIVPLLPSVRKAILE 212
           R+  ++ L    GLR +E   LT  ++      +R  + GKG + R +P+ P + + I  
Sbjct: 139 RDVLVIALGLVAGLRSAEMRMLTADSLAGRPGEMRLHVHGKGSRDRSIPVEPIMERIIAA 198

Query: 213 YYDLCP--FD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL----PLSTTAH 263
           Y D C   F       + +L L R   G P+  G  +  ++   R+ GL    P+    H
Sbjct: 199 YLDSCARRFPRKRFGRSAKLLLDR--EGSPIGRGGLEYLVKSCYRWAGLHDRVPVGANLH 256

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            LRH+FAT L  +G     I ++LGH  L+T+Q Y     + 
Sbjct: 257 ALRHTFATRLAEDGATASEIMALLGHASLATSQNYIEATGRE 298


>gi|186474605|ref|YP_001863576.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198564|gb|ACC76526.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 413

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 134/294 (45%), Gaps = 23/294 (7%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L +   W  N   E+GL++ T+  Y    R+   FL +Y     ++  +R    ++I A+
Sbjct: 121 LDDYCKWATN---EQGLAESTVGLY---ARRITRFLRWYGPGGRSLSEVR---VSDIDAY 171

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR---KITTESNILNMRNLKKSNSLPRALNE 131
           ++  R Q  G  +++ ++  +++F ++       K +  + I   R     N     L  
Sbjct: 172 LAYERRQGWGRLTIRSAVDAMRAFFRFGGVSHWCKPSFAAAIQGPRIYSLEN-----LPA 226

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
             A   V  V   + + T   D R  A+L LL   G+R SE   L   +I  ++  LR++
Sbjct: 227 GPAWVDVSRVFA-SLNSTDPKDIRARAVLMLLSIYGMRASEVAKLRLDDIDWERDQLRVR 285

Query: 192 -GKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIR 248
             K  ++++ PLLPSV KAI++Y   + P   +  + L L    R  PL+  G++     
Sbjct: 286 RAKRRELQVYPLLPSVGKAIVDYLQHVRPRSAHREVFLILMSPFR--PLSAKGIYGVVSP 343

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +L+           H LRH+ A  L++ G  L+ +   LGH     T+IYT V+
Sbjct: 344 RLKAADVHCAHHGPHALRHACAARLVAQGLSLKEVGDHLGHRSTRATRIYTKVD 397


>gi|317178966|dbj|BAJ56754.1| integrase-recombinase protein [Helicobacter pylori F30]
          Length = 355

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 14/194 (7%)

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           N    N LP  LN ++    ++++       +  + ARN  ++ ++   G+R +EAL L 
Sbjct: 157 NQSAGNKLPTHLNNEELEKFLESI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 214

Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            ++   +    T+ I+GKGDK R V L    + S+ K  L    L P   +L     LF 
Sbjct: 215 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLIERKLYPVKNDL-----LFC 269

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +G  L      + + ++  + GL      AH LRHSFAT L     DL  +Q  LGH 
Sbjct: 270 NQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 329

Query: 291 RLSTTQIYTNVNSK 304
            L+T++IYT+ + +
Sbjct: 330 SLNTSRIYTHFDKQ 343


>gi|153871856|ref|ZP_02000919.1| Type 1 fimbriae Regulatory protein fimB [Beggiatoa sp. PS]
 gi|152071680|gb|EDN69083.1| Type 1 fimbriae Regulatory protein fimB [Beggiatoa sp. PS]
          Length = 178

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 79/174 (45%), Gaps = 7/174 (4%)

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIR 198
           ++LL  + ++K    RN  ++ L+Y   LR+SEA+++T   I     T+ ++  KG    
Sbjct: 11  DLLLEATRKSKHYPQRNYCLVLLIYRHALRLSEAINMTWSQIDFANETIYVERIKGSVSG 70

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
             PL P      +E   L     + N    LF   R KPL     Q  I    +  G+  
Sbjct: 71  THPLRP------VEIMALKLLKQDTNGSKHLFISQRNKPLGKRSVQHLIALFGQEAGIEF 124

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
               H LRH+    L   G D R IQ+ LGH  +  T IYT ++SK   D+ +E
Sbjct: 125 PVHPHMLRHACGYRLAKEGRDTRVIQAYLGHKDIRNTVIYTELSSKRFDDFFLE 178


>gi|228942857|ref|ZP_04105374.1| Integrase [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228976751|ref|ZP_04137168.1| Integrase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228782964|gb|EEM31126.1| Integrase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228816813|gb|EEM62921.1| Integrase [Bacillus thuringiensis serovar berliner ATCC 10792]
          Length = 375

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 140/339 (41%), Gaps = 63/339 (18%)

Query: 16  KERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL----------AFYTE-EKITIQT 62
           KE+  W  ++ +E +  LS  TL  Y  +   FL +L             TE  ++TI+T
Sbjct: 24  KEKMPWYIIEYIEEKTNLSPATLYGYLIEYEMFLQWLISSRLATVDGKVVTEIHEVTIET 83

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--- 119
           +  L   +++ F S    Q    +++ R+ S +KS   YL              RN+   
Sbjct: 84  LEHLPLKQVKRFKSYLERQGNKTKAVIRTFSALKSLFNYLTSNTEDDNGECYFYRNVMAK 143

Query: 120 -----KKSNSLPRALNEKQALTLVDNVLLHTSHETKWI---------------------- 152
                +K +S  RA         +  V+ H + + K++                      
Sbjct: 144 MEIHKEKIDSAARAKE-------ISEVIFHNNDDIKFMRFLSNEYEKMLQETAPGKLRFF 196

Query: 153 ---DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
                R+ AIL L+ G GLR+SE  SLT  +I      +++  KGDK   +    +    
Sbjct: 197 KRDKERDIAILSLILGTGLRVSETASLTISSINFRTRYIKVIRKGDKKSSILATQTALDD 256

Query: 210 ILEYYDL------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           + EY  +      CP D ++ + +  ++G   + ++    Q+   +  R        + H
Sbjct: 257 VQEYLKVRANRYKCPDDEDI-LFVTNYKGSYAQ-ISVNAIQKLTEKYTR--AFDEKKSPH 312

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            LRH++AT+  +   DL  + + +GH  + TT +YTN++
Sbjct: 313 KLRHTYATNHYNENKDLVLLANQMGHNSMETTSLYTNID 351


>gi|121591862|ref|ZP_01679033.1| site-specific recombinase IntI4 [Vibrio cholerae 2740-80]
 gi|121546269|gb|EAX56565.1| site-specific recombinase IntI4 [Vibrio cholerae 2740-80]
          Length = 79

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 44/64 (68%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH  + TTQI
Sbjct: 1   MNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQI 60

Query: 298 YTNV 301
           YT+V
Sbjct: 61  YTHV 64


>gi|71909039|ref|YP_286626.1| integron integrase [Dechloromonas aromatica RCB]
 gi|71848660|gb|AAZ48156.1| Integron integrase [Dechloromonas aromatica RCB]
          Length = 327

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 97/224 (43%), Gaps = 48/224 (21%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K+   LP  L  ++   L+D            +   +  +  LLYG G+R+ E + L  +
Sbjct: 106 KQPQRLPVVLTRQEIAALLDR-----------MSGLHGLMARLLYGTGMRLMECVRLRVK 154

Query: 180 NIMDDQSTLRIQ-GKGDKIRIV--------PLLPSVR--------------------KAI 210
           ++  +++ + ++ GKG K R+         PL   +R                     A+
Sbjct: 155 DVDFERAEIVVRDGKGAKDRVTMLPRTLIEPLQDHLRWRRTCYEDDLARGKASVYLPNAL 214

Query: 211 LEYYDLCPFDLNLNIQLPLF-------RGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
              Y     D       P          G+ R   L+    QR +++  +  G+    T 
Sbjct: 215 DRKYPNAETDWAWQYIFPAAGYSIDPRSGVERRHHLDEKALQRAVKKALQASGIAKLATP 274

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           HT RHSFATHLL +G D+R++Q +LGH  ++TT IYT+V +K G
Sbjct: 275 HTFRHSFATHLLQSGYDIRTVQELLGHADVTTTMIYTHVLNKGG 318


>gi|325261264|ref|ZP_08128002.1| integrase/recombinase [Clostridium sp. D5]
 gi|324032718|gb|EGB93995.1| integrase/recombinase [Clostridium sp. D5]
          Length = 340

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 107/223 (47%), Gaps = 25/223 (11%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALTLVDNVLLHTSHET 149
           L+ I+++L Y+    I+ +S  L   ++   K   L R +  K  L      LL    +T
Sbjct: 90  LAAIRAYLWYVADGDISLQSVALTASHVPFLKVPKLTREMIFKDDL----KALLSAPPDT 145

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPS-- 205
           K I  R+  IL LLY   +R+SE LSL   ++  D     LRI GKGDK RIV +  +  
Sbjct: 146 K-IGRRDQMILILLYDSAVRVSELLSLDVSSVNLDAEIPYLRIYGKGDKERIVAITDTTA 204

Query: 206 --VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP--LNPG----VFQRYIRQLR-RYLGL 256
             +R  +  YY     D  L     ++  I+G+   ++ G    + ++Y  ++R  +  L
Sbjct: 205 GHIRNYLKAYYPTRVPDSPL-----IYTVIKGRKDRMSVGNVERIIKKYASKIRPEHPNL 259

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           P     H +R + AT+L  +G +L  I  ILGH    TT+IY 
Sbjct: 260 PEHCYPHMVRRTRATNLYQDGTELELISRILGHSSTETTRIYA 302


>gi|293569425|ref|ZP_06680722.1| putative integrase/recombinase [Enterococcus faecium E1071]
 gi|291587951|gb|EFF19802.1| putative integrase/recombinase [Enterococcus faecium E1071]
          Length = 201

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 7/161 (4%)

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
           H+ ++T++ + R+  +L +L   GLRI+E ++L   +I + +  +   GKG K RIV   
Sbjct: 20  HSGYQTRFTNQRDYLLLLILIDTGLRINEVMNLKDVHITNKELFVE-NGKGKKDRIVHCS 78

Query: 204 PSVRKAILEYYDLCP--FDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--P 257
           P + K  ++Y  +    F+ N   NI   +F    GK  N  + +R I ++     +   
Sbjct: 79  PLIYKEYIKYKRVANSFFEYNEIENIDNYVFLTREGKQYNYILAERAIIKIGNQCEIRKS 138

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +  + H+ RH FA  L+ NG D+  IQ +LGH  + TT++Y
Sbjct: 139 IRVSPHSFRHYFAQKLVRNGTDIYRIQKLLGHASIKTTEVY 179


>gi|332994822|gb|AEF04877.1| phage integrase family site-specific recombinase [Alteromonas sp.
           SN2]
          Length = 305

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 105/230 (45%), Gaps = 21/230 (9%)

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPRALNEKQALTLVDNVL 142
           RS+ R+++ I++ +K      IT E   L ++ +   K  N     L+ KQ    V+ + 
Sbjct: 67  RSINRAMTAIRNIVKVAVLSGITDEMQALQLQTITKVKHGNHRGTPLSSKQ----VEKLF 122

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVP 201
           +  S     I  R+ AI  LL G GLR SE ++L   +   D  TL I QGKG+K R V 
Sbjct: 123 VTLSKNHSLIGIRDHAIFALLLGTGLRRSELVTLMYADYSPDFQTLFIRQGKGNKSRTV- 181

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLF-RGIRG------KPLNPGVFQRYIRQLRRYL 254
            LP     +L  +      +  +I  PLF R  RG       PL+       IR      
Sbjct: 182 YLPHWSNDLLMDW----VQIRGSICGPLFLRIARGGHIQPDSPLSTSFIYSLIRSTLASH 237

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           G+    + H LR +F T LL    DL +++ + GH  ++TT IY   + K
Sbjct: 238 GIE-GVSPHDLRRTFITRLLEQNVDLNTVRQMAGHADIATTIIYDKRHEK 286


>gi|153810889|ref|ZP_01963557.1| hypothetical protein RUMOBE_01273 [Ruminococcus obeum ATCC 29174]
 gi|149833285|gb|EDM88367.1| hypothetical protein RUMOBE_01273 [Ruminococcus obeum ATCC 29174]
          Length = 280

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 111/239 (46%), Gaps = 18/239 (7%)

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILNMRNLKKSNSLPRAL 129
           ++ + S  +T+  G+R LKR +S ++SF  Y  KR+ I T   +L         S+ R  
Sbjct: 24  LKLYQSGDKTETNGERGLKRKISALRSFYAYYYKREMIHTNPTVLIDVPKIHEKSIIRLD 83

Query: 130 NEKQALTLVDNVLLH-----TSHETKWID---ARNSAILYLLYGCGLRISEALSLTPQNI 181
            ++ A+ L  + + H     T  +  + +    R+ AI+ LL G G+R+SE + L  +++
Sbjct: 84  TDEVAMLL--DYIEHCGDTLTGQKRVFYEKTKERDLAIVTLLLGTGIRVSECVGLDIEDV 141

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKP 237
               + +++  KG    +V   P V KA+  Y +    + P       +  LF   + K 
Sbjct: 142 DFKNNGIKVTRKGGNEMVVYFGPEVEKALKRYLEVREGITPL---AGHEHALFYSAQRKR 198

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           +     +  +++  R +      T H LR ++ T L    GD+  +  +LGH  ++TT+
Sbjct: 199 MGVQAVENMVKKYSRQITTTKKITPHKLRSTYGTALYQETGDIYLVADVLGHKDVNTTK 257


>gi|241992505|gb|ACS73587.1| IntI [uncultured bacterium]
          Length = 312

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 83/180 (46%), Gaps = 37/180 (20%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--------IVPLLPSVRK- 208
           +  LLYG G+R+ E L L  +++  ++  + + +GKG+K R        I+PL   ++K 
Sbjct: 133 VASLLYGTGMRLLEGLRLRVKDVEFERREIIVREGKGNKDRVTVLPENLILPLQAHLKKV 192

Query: 209 -------------------AILEYYDLCPFDLNLNIQLP-LFRGI-------RGKPLNPG 241
                              A+ + Y             P   R +       R   L   
Sbjct: 193 KALHERDLEAGFGEVYLPDALAKKYPKAGRAWGWQFVFPSTVRSVDPRSGIERRHHLYEA 252

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             QR +R+  +   +    + HTLRHSFATHLL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 253 SVQRAVREAAKLAEIIKPVSPHTLRHSFATHLLQSGYDIRTVQELLGHSDVSTTMIYTHV 312


>gi|86741040|ref|YP_481440.1| phage integrase [Frankia sp. CcI3]
 gi|86567902|gb|ABD11711.1| phage integrase [Frankia sp. CcI3]
          Length = 322

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 7/151 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKG---DKIRIVPLLPSVRK 208
           R+  I+ LLY  G+R +E ++L   ++     T  +    GKG    K R +P  P  R+
Sbjct: 155 RDRTIIELLYNTGVRCAELVALDLDDVPVTARTGAVHVRAGKGRDGGKPRTIPANPRARR 214

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           A+ ++        N      LF    G+ L+     + +  L R +G+    T H LRH+
Sbjct: 215 ALTDWKPARAAWPNAEADPALFLNRYGRRLSTRTVDQVVADLGRSVGID-DLTPHVLRHT 273

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           FAT +L  G DL  +  +LGH R  TT++YT
Sbjct: 274 FATAMLRRGADLVLVAELLGHARTDTTRVYT 304


>gi|86150256|ref|ZP_01068483.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|88597569|ref|ZP_01100803.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|218562491|ref|YP_002344270.1| DNA recombinase [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|85839372|gb|EAQ56634.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|88190161|gb|EAQ94136.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|112360197|emb|CAL34991.1| DNA recombinase [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284926106|gb|ADC28458.1| DNA recombinase [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315926491|gb|EFV05873.1| phage integrase family protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 354

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 130/273 (47%), Gaps = 33/273 (12%)

Query: 45  QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK 104
           ++L F   Y+ ++I  + I      E+ A I    T  + D S K     + +F  +L K
Sbjct: 85  EYLNFYKLYSLKQIDEELI-----VEVLASI----TGALSDASKKNYRIAVINFFDFLDK 135

Query: 105 RKITTESNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
           +    E   +   NLK        K   LP  +++++    +D +    + + K    RN
Sbjct: 136 QNEEDEKAHIFDINLKNWAGIAGSKGVKLPEFMSKEELKKFLDAI---ENADFKNNTIRN 192

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
             I+ ++   G+R+SEA+++   +I +  D   +RI+ KG+K R+V     ++K ++  Y
Sbjct: 193 KLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVV----MIKKELI--Y 246

Query: 215 DLCPFDLNLNI---QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFA 270
           DL   ++++N       LF   +G PL      R + QL    G+      AH LRH+FA
Sbjct: 247 DLLK-NVSINYISKDALLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLRHTFA 305

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           T L     DL  +Q  LGH  L+T++IYT+ ++
Sbjct: 306 TLLYKKQKDLVLVQEALGHASLNTSRIYTHFDN 338


>gi|330902727|gb|EGH33740.1| hypothetical protein PSYJA_34455 [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 206

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 86/179 (48%), Gaps = 11/179 (6%)

Query: 130 NEKQALTLVDN---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           NE +   L D+    LL    ET     R+ A+L +L   GLR  EA  L   +I + + 
Sbjct: 19  NEGKTPALGDHQAKALLEAPDETTLKGQRDRALLAVLLYHGLRREEAALLQVSDIQERRG 78

Query: 187 T--LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
              L++ GKG K+R +PL P     I +Y +     L    ++PLF  +RGK    G+  
Sbjct: 79  IQHLKVHGKGGKVRYLPLHPIAAGRIHQYLENSEHHL-AERKVPLFMPLRGKLTGAGITA 137

Query: 245 RYIRQL----RRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             I  +     +  G+ +     H LR + AT+ L +  D+  +Q+ LGH  +STT+IY
Sbjct: 138 NGIYAVVTAYAKKAGIEVDGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 196


>gi|30908742|gb|AAP37603.1| IntI [uncultured bacterium]
          Length = 161

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 44/64 (68%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           ++P   Q+  ++  R   +P +   HTLRHSFATHLL +G D+R+IQ +LGH  +STT I
Sbjct: 98  VSPSSLQKVFKEALRKTRIPKNAGPHTLRHSFATHLLQDGYDIRTIQDLLGHKEISTTMI 157

Query: 298 YTNV 301
           YT+V
Sbjct: 158 YTHV 161


>gi|228911572|ref|ZP_04075361.1| Integrase [Bacillus thuringiensis IBL 200]
 gi|228848075|gb|EEM92940.1| Integrase [Bacillus thuringiensis IBL 200]
          Length = 364

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 138/332 (41%), Gaps = 49/332 (14%)

Query: 16  KERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL-----AFYTEE------KITIQT 62
           KE+  W  ++ +E +  LS  TL  Y  +   FL +L     A    E      ++TI+T
Sbjct: 17  KEKMPWYIIEYIEEKTNLSPATLYGYIIEYEMFLQWLLSSRLAVADGEVVTKIHEVTIET 76

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN-LKK 121
           +  L   +++ F S    Q    +++ R+ S +KS   YL              RN + K
Sbjct: 77  LEHLPLKQVKRFKSYLERQGNKTKAVIRTFSALKSLFHYLTSNTEDDNGECYFYRNVMAK 136

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWID-------------------------ARN 156
                  ++       +  V+ H + + K++                           R+
Sbjct: 137 VEIHKEKIDAAARAKEISEVIFHNNDDIKFMRFLSNEYEQMLQETAPGKLRFFKRDRERD 196

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
            AIL L+ G GLR+SEA +LT  +I      +++  KGDK   +    +    + EY  +
Sbjct: 197 IAILSLILGTGLRVSEAANLTISSINFRTRYIKVVRKGDKKSSILATQTALDDVQEYLKV 256

Query: 217 ------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
                 CP D ++ + +  ++G   + ++    Q+   +  R        + H LRH++A
Sbjct: 257 RAVRYRCPDDEDI-LFVTNYKGAYAQ-ISVNAIQKLTEKYSR--AFDEKKSPHKLRHTYA 312

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           T+  +   DL  + + +GH  + TT +YTN++
Sbjct: 313 TNHYNENKDLVLLANQMGHNSMETTSLYTNID 344


>gi|89147408|gb|ABD62564.1| integrase [uncultured bacterium]
          Length = 163

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 47/69 (68%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R    +  + QR +++  R +G+    + HTLRHSFATH+L +G D+R+IQ +LGH  +
Sbjct: 94  VRRHHTSEDMLQRAVKRAVRQVGISKRVSCHTLRHSFATHMLESGYDIRTIQELLGHRSV 153

Query: 293 STTQIYTNV 301
            TTQIYT+V
Sbjct: 154 ETTQIYTHV 162


>gi|255527476|ref|ZP_05394346.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296187574|ref|ZP_06855969.1| phage integrase [Clostridium carboxidivorans P7]
 gi|308390320|ref|YP_003933773.1| putative integrase/recombinase [Clostridium carboxidivorans P7]
 gi|255508819|gb|EET85189.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296048096|gb|EFG87535.1| phage integrase [Clostridium carboxidivorans P7]
 gi|308066827|gb|ADO12131.1| putative integrase/recombinase [Clostridium carboxidivorans P7]
          Length = 295

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 125/288 (43%), Gaps = 56/288 (19%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           +I+ G    T++ Y  D  QF+ +L     +   I +       EI  F  K   + +  
Sbjct: 36  KIDEGKRTETIKGYFNDLIQFIRYLEIKGVDLFNIDS------KEIELFKGKMLRRGLKP 89

Query: 86  RSLKRSLSGIKSFLKYL----KKRKITTES-NILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +S+ R L+ I  FLK +    K RKI  +S N LN       +   R   E+  +    N
Sbjct: 90  KSINRKLTSINQFLKSIDSQVKFRKIKEQSQNFLN-------DVFTREEIER-LIKCCSN 141

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +             R+ AI+  L+  G+R+SE L L  +++   + ++ I+GKG K R +
Sbjct: 142 I-------------RDKAIISTLWKTGIRVSELLQLKVRDV--GKESIDIEGKGGKHRDI 186

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYI------RQLR 251
            +   + K + EY       L + I +P   LF G RG  L  G   + I       ++R
Sbjct: 187 LISNELNKLLKEY-------LKVRISVPGNELFTGKRG-ALKRGAINKIILKYAKLAKIR 238

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           +    P     H+ RH+F   L  NG  +  I  + GH  L TT+IYT
Sbjct: 239 KEKAHP-----HSFRHAFCKALADNGVSIDIIADLAGHKSLDTTRIYT 281


>gi|134298789|ref|YP_001112285.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134051489|gb|ABO49460.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 294

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 129/271 (47%), Gaps = 15/271 (5%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S LT+  Y+ +  +F  +L     E +   T   +   + + ++   + QK    ++ R 
Sbjct: 15  SPLTVAGYQTELEKFQQWLWTTVNEPLERAT--DMDVKDYKQYLLTVKKQKPS--TVNRG 70

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L  ++ +  +   + +   +   N++ ++   + P+ L+   A  L   VL        +
Sbjct: 71  LKVLRKYYSWAVIQGLIQYNPAANVKLVRVQQAAPKWLDRIDAARLKRAVL--NDEHNAF 128

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRI-QGKGDKIRIVPLLPSVRK 208
             AR+ AIL L+ G GLR++E  +L   +I+  + + T+ + +GKG+K   VPL   VR+
Sbjct: 129 KRARDYAILLLMLGAGLRVAEVAALELADIIMSERKGTVIVRKGKGNKYAEVPLNKDVRQ 188

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG-LPLSTTAHTLRH 267
           A+ EY D+    +  +    LF G RG P+     Q    ++ +Y G   +  +AH LRH
Sbjct: 189 ALNEYLDIRK-TVKCSDSTFLFLGERG-PIKKRAIQF---RVEKYAGKSSVKASAHQLRH 243

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +F   L+++G  L  +  +  H  ++TT  Y
Sbjct: 244 TFCKELINHGEPLNVVAHLSRHSDVNTTMRY 274


>gi|223369842|gb|ACM88790.1| integrase [uncultured bacterium]
          Length = 163

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 42/60 (70%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           V Q  +++  R  G+    T HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 103 VLQVAVKRAVRASGVNKPATCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|322435609|ref|YP_004217821.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321163336|gb|ADW69041.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 414

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 128/291 (43%), Gaps = 29/291 (9%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L + RGL+  T + Y      FL    +  + + ++  I   S +++  FI  +R     
Sbjct: 130 LSVVRGLAPETTRIYRTRVSHFL---EWALDRRASLSVI---SLSDVDDFILMKRASGYL 183

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD-NVLL 143
            RS+      I+ F +Y ++R        LN+R       +PR L+  +  T  D   L+
Sbjct: 184 PRSIVSFCGAIRMFFRYAEERGWNNSHIPLNLRG----PHIPRYLSAPKGPTWKDVRRLI 239

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL 202
           +   ET  ++ R +AILYL    GLR SE + L   +      T  + + K  +++  P+
Sbjct: 240 NNKTETP-VELRATAILYLCSIYGLRSSEVVGLRLSDFNWVSETFVVHRAKRGRVQQFPI 298

Query: 203 LPSVRKAILEYYD------LCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
              V +AIL Y        +C    N+ + L P +R +R   L  G+    +++L    G
Sbjct: 299 QFEVGEAILGYLQRGRPQCVC---RNVFVTLRPPYRTVRATTLW-GIAADRMKKL----G 350

Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +       H LRHS AT LL  G  L+ I   LGH  + +  IY   + K+
Sbjct: 351 ITSENYGGHALRHSCATELLRRGSSLKDIADFLGHRDMRSVSIYAKYDLKS 401


>gi|149195410|ref|ZP_01872494.1| Integrase [Caminibacter mediatlanticus TB-2]
 gi|149134460|gb|EDM22952.1| Integrase [Caminibacter mediatlanticus TB-2]
          Length = 315

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 13/172 (7%)

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TL 188
           EK  L L++ + L  S+ T     RN+ I+YLL   G R+SE ++L   +I ++     L
Sbjct: 135 EKIQLALINKLNLTKSYTT----FRNAFIVYLLSLTGARVSEIINLKNDDIKENGEFFYL 190

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRY 246
           ++ GKG+K RIVP+        LE         N+N +  LP  +G +    +    Q +
Sbjct: 191 KLTGKGNKERIVPIEKDYIIDFLEKLQELKDKDNINSEYFLPDKQGYKTAITS---IQSF 247

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            + L + LG+      H  RH+FAT LL  G D+ +I+ +LGH  + TT  Y
Sbjct: 248 NKTLLKNLGIK--GNIHQYRHTFATILLEKGVDINTIKELLGHSSIQTTASY 297


>gi|331270786|ref|YP_004397223.1| integrase/recombinase [Clostridium botulinum BKT015925]
 gi|329127504|gb|AEB77447.1| integrase/recombinase [Clostridium botulinum BKT015925]
          Length = 272

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 127/279 (45%), Gaps = 39/279 (13%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T+ +Y+ D ++F+    ++ + K+ I TI    + +            +  +++ R+
Sbjct: 18  SEKTIYTYKNDIKRFV---KYFEKNKLEITTINMRKFKDYLL-----EVLLLSPKTVNRN 69

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           +  I+ FL+YL    I      + M  ++    L   L   +A+ ++           K 
Sbjct: 70  IIAIRQFLEYLHINNID-----IKMIKIQDQGFLDDILTNDEAIRMI-------KETEKA 117

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
            D R  A +  LY  G+R+SEA+S+  ++I +D  ++RI GKG K R V L+P   K I 
Sbjct: 118 RDLRAKAFICTLYYTGMRVSEAISVLSKDINED--SIRILGKGRKYRDV-LIPKKLKKIW 174

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY--IRQLRRYLGLPL----STTAHTL 265
           + Y      + +N    LF G        G   R+  +  +++Y G+          H  
Sbjct: 175 KDY----MTVRINNSDKLFTG------REGGISRFTALNIVKKYGGMAKIKKDKVYNHAF 224

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           RH +  +L+  G  + +++ + GH  +STT IYT  + K
Sbjct: 225 RHLYCINLVDRGIPIDAVKDLAGHENISTTTIYTRKSKK 263


>gi|171057464|ref|YP_001789813.1| integrase family protein [Leptothrix cholodnii SP-6]
 gi|170774909|gb|ACB33048.1| integrase family protein [Leptothrix cholodnii SP-6]
          Length = 339

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 131/307 (42%), Gaps = 21/307 (6%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P   SF  L +   + ++L  +R LS  T+ +Y      FL F      +  T  ++  L
Sbjct: 9   PAPPSFATLVQ-SFFAEHLTQQRALSPQTVAAYRDAFVLFLDFAQARLHKTPTTLSLADL 67

Query: 67  SYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +   I  F+    R +    RS    L+ ++SFLK+  +R +T       ++ ++ +  +
Sbjct: 68  TPALILDFLDHLERDRHNTVRSRNARLAALRSFLKFAARRDVTA------LQVVEHALGV 121

Query: 126 PRALNEK---QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI- 181
           P    E+   + LT  + + +  +    W+  R+  +L LLY  G R+SE + +   ++ 
Sbjct: 122 PMKRFERPMFEFLTREEMLAVIGAPGADWVSQRDKLLLALLYNTGARVSEVIGVKVGDVV 181

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-P 240
           +   + + + GKG K R VPL  S  K I  +    P    L     L     G+ +   
Sbjct: 182 LAPAACVHLHGKGRKQRSVPLWRSTVKVIRAWLRFNP---ELTPTSALLPNRSGQAMTRS 238

Query: 241 GVFQRYIRQLRRYLGLPLS-----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            V QR    ++       S      + H LRHS A HLL +G D+  I   LGH   +TT
Sbjct: 239 NVTQRLALAVKAAALTTPSLAGRTISPHCLRHSTAMHLLQSGVDISVIALWLGHESPATT 298

Query: 296 QIYTNVN 302
             Y   +
Sbjct: 299 HQYVEAD 305


>gi|223369846|gb|ACM88792.1| integrase [uncultured bacterium]
          Length = 163

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 46/74 (62%)

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           PL R +R   L+    QR + +  R  G+    T HT RHSFATHL+ +G D+R++Q +L
Sbjct: 89  PLSREMRRHHLHVSAVQRAVTEAVRGSGITKRATCHTFRHSFATHLIEDGYDIRTVQELL 148

Query: 288 GHFRLSTTQIYTNV 301
           GH  + TT IYT+V
Sbjct: 149 GHADVRTTMIYTHV 162


>gi|110802062|ref|YP_699092.1| tyrosine recombinase XerD [Clostridium perfringens SM101]
 gi|110682563|gb|ABG85933.1| tyrosine recombinase XerD [Clostridium perfringens SM101]
          Length = 290

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/286 (20%), Positives = 135/286 (47%), Gaps = 18/286 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L+ + + +L+++    G  K T+ +Y  D     ++L F  E+ + +    + SY  I 
Sbjct: 3   DLVSKYEVYLESI----GKRKNTVSAYITDVS---MYLDFVYEKGLKVS---EDSYPLI- 51

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +++   +       S++R++  +++F  +L   +   +   L M+  +     P  L  +
Sbjct: 52  SYVQHLKESHKSPSSIQRTIISLRNFYNFLVAEEFLKKVPNLTMKKERIEKKKPLVLTVE 111

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +      N ++++++       R+ A+L L+Y  G+++SE +SL  ++I  D S +  + 
Sbjct: 112 EI-----NKIMNSTNVLTEKGIRDKALLELMYATGMKVSELISLRIEDINLDSSFVNCRD 166

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
                R++P+    +++I  Y  +   + N      LF  + G+P+      R +++   
Sbjct: 167 SRGYERLIPIGKEAKESIKRY--IVVREDNSKGSDKLFLNMSGEPITRQGVWRIVKEYAV 224

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              +      +T RHSFA HLL NG + + +Q +LG+  ++   +Y
Sbjct: 225 IANIGKDINLNTFRHSFAVHLLQNGANAKVVQELLGNQVMTYIDMY 270


>gi|89147466|gb|ABD62593.1| integrase [uncultured bacterium]
          Length = 163

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 42/68 (61%)

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   L+  V QR ++   R   +    T HTLRHSFATHLL  G D+RSIQ +LGH  L 
Sbjct: 95  RRHHLHESVIQRNVKSAAREAQISKRVTTHTLRHSFATHLLEAGYDIRSIQELLGHADLK 154

Query: 294 TTQIYTNV 301
           TT IYT+V
Sbjct: 155 TTMIYTHV 162


>gi|149908948|ref|ZP_01897607.1| site-specific recombinase, phage integrase family [Moritella sp.
           PE36]
 gi|149807959|gb|EDM67902.1| site-specific recombinase, phage integrase family [Moritella sp.
           PE36]
          Length = 288

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 107/221 (48%), Gaps = 19/221 (8%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           +LK  L+GI    +++  R  T    +      K+   LP+ L ++     +  V+ +  
Sbjct: 65  TLKLHLNGIHFLFEHVLHRSFTISVCLP-----KRKEKLPQLLTQQD----ISAVIYYCK 115

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205
                   ++ A++ L YGCGLR+SE   +   +I   +  L++ QGKG K R+V + P 
Sbjct: 116 ------TNKHRAMVALCYGCGLRVSELTHVKVSDIDGQRQLLKVCQGKGAKDRLVIISPV 169

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           + + + +Y+    +  +  +    + G+   P++   F++ +    +  G+    + H+L
Sbjct: 170 LLQFMRQYWQ--QYHPDTWLFGSRWHGVI-YPIHESTFRKGLTCAAKKAGITKPCSPHSL 226

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           RH++ATH L  G  L  +Q  LGH  + +T+ Y + + + G
Sbjct: 227 RHAYATHQLQAGMPLNQLQQQLGHQSIQSTERYLHWSPELG 267


>gi|331697264|ref|YP_004333503.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326951953|gb|AEA25650.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
          Length = 331

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 125/299 (41%), Gaps = 55/299 (18%)

Query: 48  IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG--------------DRSLKRSLS 93
           +F     +E   + T       +I AFI+ +R  + G               R++KR L+
Sbjct: 33  VFFTVVRKEPAAVVT------ADIFAFITAQRAPRRGVKVVRLEDGEAGLSARTIKRRLA 86

Query: 94  GIKSFLKYLKKR------KITTESNILNMRN--------LKKSNSLPRALNEKQALTLVD 139
            +     YL  R      +    S +   R         L+   +LPR L   +    VD
Sbjct: 87  SVSGLFGYLMTRDDVAVDRNPVPSGLAGRRQGATRGAPLLRTPRTLPRVLGPDE----VD 142

Query: 140 NVL--LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
            VL  L+T       D   + +L +L G GLR  E L+L   ++   +  + I +GKG  
Sbjct: 143 AVLRVLNT-------DRDRAMVLAMLLG-GLRRCEVLALRLPDLSPGERRVFIAEGKGGH 194

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLG 255
            R+VP+      A+ EY D     ++ +    + RG  RG+PL        +   R   G
Sbjct: 195 QRLVPVSAQFFAAVGEYLDRERPAVDHDRLFVVLRGPTRGRPLTAAGLDEIVHGARWRAG 254

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           LP   T H LRH+  T L   G  L ++Q+  GH  + +T++Y ++ +     W+++ Y
Sbjct: 255 LP-KLTCHQLRHTCLTRLREAGMALEAVQAQAGHRSIESTRVYLHLANA----WLVQQY 308


>gi|160874309|ref|YP_001553625.1| integrase family protein [Shewanella baltica OS195]
 gi|217972349|ref|YP_002357100.1| integrase family protein [Shewanella baltica OS223]
 gi|160859831|gb|ABX48365.1| integrase family protein [Shewanella baltica OS195]
 gi|217497484|gb|ACK45677.1| integrase family protein [Shewanella baltica OS223]
 gi|315266542|gb|ADT93395.1| integrase family protein [Shewanella baltica OS678]
          Length = 287

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 109/225 (48%), Gaps = 27/225 (12%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           +LK  L+GI  F +++  R  T + ++      K+ + LP+ L+ +     +  +L H  
Sbjct: 65  TLKLQLNGIHFFYEHVLGRDFTVQLSLP-----KRPHKLPQLLSCQD----IAALLCHCQ 115

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205
                 + +  A+L L YGCGLR+SE   +   +I   +  L++ QGKG   R+V + P+
Sbjct: 116 ------NLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGAYDRLVIISPT 169

Query: 206 VRKAILEYY-DLCPFDLNLNIQLPLFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTT 261
           +   + +Y+    P +        LF         PL+   F++ + +  R   +    +
Sbjct: 170 LLTLLRQYWRAYHPVEW-------LFASTYHDVVYPLHESTFRKALAKAARLASITKPCS 222

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
            H+LRH++ATH L  G  L  +Q+ LGH  + +T+ Y + + + G
Sbjct: 223 PHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPELG 267


>gi|164633081|gb|ABY64756.1| IntI1 [Klebsiella pneumoniae]
          Length = 317

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 124/304 (40%), Gaps = 58/304 (19%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YTNV 301
           Y + 
Sbjct: 312 YRHC 315


>gi|134098863|ref|YP_001104524.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
 gi|291005779|ref|ZP_06563752.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
 gi|133911486|emb|CAM01599.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
          Length = 329

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 74/159 (46%), Gaps = 8/159 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAILE 212
           R+ A+L  L   G+R +E L L   ++        L ++GKG K R +P+  ++   I  
Sbjct: 149 RDLAVLATLLCTGVRSAELLDLKVGSLAGRAGDRRLHVRGKGGKNRSIPIEDALDSVIQN 208

Query: 213 YYDL--CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP----LSTTAHTLR 266
           Y +     F   L    PLF   R +PL  G  Q  +RQ  R  G+          H LR
Sbjct: 209 YLETRRARFGERLPGSDPLFVDHREEPLRRGGLQYLVRQSLRAAGMSDRVQRGAMVHALR 268

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           H+FAT L  +G     I  +LGH  ++++Q Y +V ++ 
Sbjct: 269 HTFATRLAEDGASAAEIAKLLGHASINSSQTYIDVTARE 307


>gi|89147351|gb|ABD62536.1| integrase [uncultured bacterium]
          Length = 163

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 41/60 (68%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           V QR ++Q  R  G+    + HT RHSFATHLL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 103 VLQRAVKQAVRDAGISKPASCHTFRHSFATHLLDAGYDIRTVQELLGHKHVSTTMIYTHV 162


>gi|89147663|gb|ABD62690.1| integrase [uncultured bacterium]
          Length = 163

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 44/64 (68%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           ++  V Q  +++  R  G+    T HTLRHSFATHLL NG D+R++Q +LGH  +STT I
Sbjct: 99  VDENVLQVAVKRAVRASGVNKPATCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMI 158

Query: 298 YTNV 301
           YT+V
Sbjct: 159 YTHV 162


>gi|282901889|ref|ZP_06309792.1| Phage integrase [Cylindrospermopsis raciborskii CS-505]
 gi|281193227|gb|EFA68221.1| Phage integrase [Cylindrospermopsis raciborskii CS-505]
          Length = 287

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 78/149 (52%), Gaps = 13/149 (8%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAI 210
           + RN  IL LL+ CGLR+SE   L   +I D+ ST  + I GKG+K R + ++P +  A 
Sbjct: 136 NTRNRLILQLLFFCGLRVSELTILLWADIKDNGSTAYVHITGKGNKQRTL-IIPPLLWAS 194

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           L+ +           + P+F+  +G K L        +R   + +G+  S + H LRH+ 
Sbjct: 195 LKSHKTTN-------ESPVFKSRKGGKNLTQKAVWDIVRTASQRIGI--SASPHWLRHTH 245

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           A+  L NG D+  + + LGH  ++TT  Y
Sbjct: 246 ASLALHNGADINQVSTSLGHSSVATTTKY 274


>gi|109947411|ref|YP_664639.1| integrase-recombinase protein [Helicobacter acinonychis str.
           Sheeba]
 gi|109714632|emb|CAJ99640.1| integrase-recombinase protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 361

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 93/189 (49%), Gaps = 14/189 (7%)

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           N LP  LN ++    ++++   T   +  +  RN  ++ ++   G+R +EAL L  ++  
Sbjct: 168 NKLPTYLNSEELEKFLESI--DTIEMSAKVRVRNRLLIKIIVFTGMRSNEALQLKIKDFT 225

Query: 183 DDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
            +    T+ I+GKGDK R V L    + ++ K  L   +L P   +L     LF   +G 
Sbjct: 226 LENGCYTILIKGKGDKYRAVVLKAFHIENLLKEWLIERELYPVKNDL-----LFCNQKGM 280

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            L      + + ++  + GL      AH LRHSFAT L     DL  +Q  LGH  L+T+
Sbjct: 281 ALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHASLNTS 340

Query: 296 QIYTNVNSK 304
           +IYT+ + +
Sbjct: 341 RIYTHFDKQ 349


>gi|315930520|gb|EFV09564.1| phage integrase family protein [Campylobacter jejuni subsp. jejuni
           305]
          Length = 187

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 78/144 (54%), Gaps = 13/144 (9%)

Query: 166 CGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
            G+R+SEA+++   +I +  D   +RI+ KG+K R+V     ++K ++  YDL   ++++
Sbjct: 35  TGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVVM----IKKELI--YDLLK-NVSI 87

Query: 224 NI---QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGD 279
           N       LF   +G PL      R + QL    G+      AH LRH+FAT L     D
Sbjct: 88  NYISKDALLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLRHTFATLLYKKQKD 147

Query: 280 LRSIQSILGHFRLSTTQIYTNVNS 303
           L  +Q  LGH  L+T++IYT+ ++
Sbjct: 148 LVLVQEALGHASLNTSRIYTHFDN 171


>gi|268679893|ref|YP_003304324.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268617924|gb|ACZ12289.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 353

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 126/260 (48%), Gaps = 21/260 (8%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR----KITTESNI 113
           + + +++++    +  F++ + T  + D + K     + SF K+L K+    K TT    
Sbjct: 90  LQLHSLKEIDEELLSEFLASQ-TGSLSDATKKNYRIALLSFFKFLDKQNEDEKGTTYQFR 148

Query: 114 LNMRNL-----KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
           + ++N      ++   LP  + +++    +  +    +    +  A+N  ++ ++   G+
Sbjct: 149 IELKNWGGLGGRRGEKLPAHMYKEEITRFLKAI--EETEFKPYAQAKNRLLIKMILYTGM 206

Query: 169 RISEALSLTPQNIMDDQSTL--RIQGKGDKIRIVPL-LPSVRKAILEYYDLCPFDLNLNI 225
           R+SEAL L  ++++ +++ L   I+GKG+K R   +   ++   + E+ +    D  L  
Sbjct: 207 RVSEALGLKIKDMVKEENYLICHIRGKGNKPRTAMIKYETIEADLQEWMEYRSSDSAL-- 264

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
              LF+   GKPL        + ++  + G+      AH LRH+FAT L     DL  +Q
Sbjct: 265 ---LFQSRTGKPLTQAYVSYVMDKMLFHAGIRKEKNGAHMLRHTFATLLYQKNRDLILVQ 321

Query: 285 SILGHFRLSTTQIYTNVNSK 304
             LGH  L+T++IYT+ + +
Sbjct: 322 EALGHADLNTSRIYTHFDKE 341


>gi|327438335|dbj|BAK14700.1| integrase [Solibacillus silvestris StLB046]
          Length = 280

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 132/299 (44%), Gaps = 29/299 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + Q+ +IE G S LTL++Y     Q+ + L F+ +  +   +  +L    I++     
Sbjct: 8   KKYQQDKKIE-GYSTLTLKTY---CFQYNLLLRFFGDIDMNGFSTEKLKEYLIQS----- 58

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +   SL   +  +KS  ++  +     ++    ++  K    +P+ L+E +   L 
Sbjct: 59  -GNHLKPSSLGHRIRCVKSLFRWSHEEGYILKNPAAKLKEPKLGKRIPKFLSELEIEHLR 117

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +     T+ E        +A+   +Y  G RI E + L   +I    +++ +QGKGDK R
Sbjct: 118 EAC--QTTME--------NALFEFMYSTGCRIGEVVKLDRHDIDFRTNSVIVQGKGDKER 167

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---LNPGVFQRYIRQLRRYLG 255
            V         +  Y D    D       P       KP   ++    +  I+++    G
Sbjct: 168 EVYFNTRCSIWLKRYLDEREDDD------PCLFITDRKPKRRMSIDNLRYIIKRVSNRAG 221

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           +      H LRHS+ATH+++NG  +  IQS+LGH +  TT+IY  ++ K   D+  + +
Sbjct: 222 IKKCIHPHQLRHSYATHMINNGAPIDVIQSLLGHEKSETTKIYAQLSGKIRQDYYSKYF 280


>gi|320161519|ref|YP_004174743.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
 gi|319995372|dbj|BAJ64143.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
          Length = 300

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 75/148 (50%), Gaps = 8/148 (5%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            R+ AI+ LL   G+R SE   +  ++I      + I GKG K R+VP+  + R A+ +Y
Sbjct: 141 VRDRAIILLLLDTGIRASELCGIKVKDI--KPHGIYIHGKGSKDRLVPISETTRSALCDY 198

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                     +I+  +F+  +G  L+    +  IR++    G+      H  RH+FA + 
Sbjct: 199 -----IGEQKDIEKYVFKTEQGNVLSRDALRLIIRRIGDRAGVN-DAHPHRFRHTFAINF 252

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           L NGGD+ ++Q+ILGH  L   + Y  +
Sbjct: 253 LRNGGDVFTLQAILGHETLDMVRRYLAI 280


>gi|320335754|ref|YP_004172465.1| integrase family protein [Deinococcus maricopensis DSM 21211]
 gi|319757043|gb|ADV68800.1| integrase family protein [Deinococcus maricopensis DSM 21211]
          Length = 291

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 128/295 (43%), Gaps = 41/295 (13%)

Query: 20  NWLQNLEI------ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           NW Q+  +       +GLS  TL+ Y    RQ       Y+ E+ T+  +    Y     
Sbjct: 2   NWNQHFNLFIGDREYQGLSPETLRYY----RQCWERFKQYSGEEPTVDRMTLQQY----- 52

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEK 132
            IS + T      S+     G+K FLK+        E +  +   LK     PRA   +K
Sbjct: 53  LISLQATHT--PSSIATRWRGLKIFLKWC----YVEEYSEFDPSRLKN----PRAPFKKK 102

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQ 191
           Q L+ ++ + L  +      + R+ AI+ LL+  G+R  E  +LT  ++ + ++      
Sbjct: 103 QPLSEIEVLKLLNACR----NFRDKAIVALLFDTGIRSKELCNLTVGDVDLVNRCVYVRN 158

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF----RGIRGKPLNPGVFQRYI 247
           GKG + RIVP  PS  +      DL  +    N++ P F    +G  G  LN       +
Sbjct: 159 GKGGRDRIVPFSPSALR------DLRKWAQQRNVESPWFFHVVKGEVGGALNRRWLHGLL 212

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               +  GL      H LRHS+A   +++ G+  ++Q  LGH  +  TQ Y N+N
Sbjct: 213 MSAGKRAGLGEIVGPHKLRHSYARSYIASNGNPMALQETLGHSSIIVTQRYVNLN 267


>gi|99034662|ref|ZP_01314606.1| hypothetical protein Wendoof_01000576 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 191

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 94/180 (52%), Gaps = 18/180 (10%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM------DDQSTLRIQGKGDKIRIVPLLPSVRK 208
           R  AIL +LY  G+R+SE +S+    +       + +  + I+GK  + R +       +
Sbjct: 15  RLCAILDILYSSGMRVSELISMKLCEVSHLINSNNKECYIIIKGKSGRERQILFNEQALQ 74

Query: 209 AILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRY---IRQLRRYLGLPLST-TAH 263
           ++  Y  +    ++   +   LF G   KP  P   QR    +++L R   +  +  + H
Sbjct: 75  SLRNYLSVRDNLISKEKESDWLFPG--DKPNKPITRQRVGQLMKELARKCNIDENKISPH 132

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            +RHSFATHLL++G ++  IQ +LGH  LSTTQIYT++ ++   D + +    +HP ITQ
Sbjct: 133 VVRHSFATHLLNSGANIVLIQKVLGHTNLSTTQIYTHIANEKLKDKLAD----SHP-ITQ 187


>gi|322376313|ref|ZP_08050806.1| integrase/recombinase XerD [Streptococcus sp. M334]
 gi|321282120|gb|EFX59127.1| integrase/recombinase XerD [Streptococcus sp. M334]
          Length = 212

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 2/179 (1%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           ++P  + +   + L   V++  +   K    RN  I+ LL   G+RISE   +  ++I  
Sbjct: 14  TIPHDILKSIFIYLEQKVIVSKTDYQKQHAERNLLIISLLLSTGIRISELCHIRLKDINL 73

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
              TL I GKG K RI+ L       +LE Y     + + +   P    +  KPL+    
Sbjct: 74  SNKTLHIIGKGKKERILFLGDQTTFNLLETYINKTRNESNDFLFPGKHSL--KPLSEQSV 131

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +  ++++     L  + T H  RHSFAT LL +  D+R IQ ILGH  +S TQIYT+V+
Sbjct: 132 RLILKRIVEQNSLSRTITPHMFRHSFATMLLDSDVDIRYIQQILGHSSISVTQIYTHVS 190


>gi|260889471|ref|ZP_05900734.1| tyrosine recombinase XerC [Leptotrichia hofstadii F0254]
 gi|260860882|gb|EEX75382.1| tyrosine recombinase XerC [Leptotrichia hofstadii F0254]
          Length = 91

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 4/86 (4%)

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           +GK L     +R I       G+    T H  RHSFAT LL+NG D+R +Q +LGH  ++
Sbjct: 6   KGKKLTTRSLRRLISAHAHEAGIQKEITPHVFRHSFATELLNNGVDIRYLQELLGHSSIA 65

Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHP 319
           TTQ+YT+V+      ++ +IY  THP
Sbjct: 66  TTQVYTHVSKA----FLRDIYMNTHP 87


>gi|169826684|ref|YP_001696842.1| hypothetical protein Bsph_1102 [Lysinibacillus sphaericus C3-41]
 gi|168991172|gb|ACA38712.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 238

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 106/221 (47%), Gaps = 19/221 (8%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           SL   +  +KS  ++  +   T ++    ++  K    +P+ L+E +   L +     T+
Sbjct: 24  SLGHRIRCVKSLFRWSHEEGYTLKNPAAKLKEPKLGKRIPKFLSEVEIEHLREAC--QTT 81

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
            E         A+   +Y  G RI E + L  ++I    +++ +QGKGDK R V    + 
Sbjct: 82  ME--------KALFEFMYSTGCRIGEVVKLNREDIDFQSNSVIVQGKGDKEREVYF--NT 131

Query: 207 RKAI-LEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           R +I L+ Y     D   + +  LF   R   + ++    +  I+++     +  S   H
Sbjct: 132 RCSIWLKRY----LDEREDREPCLFITDRRPKRRMSIDNLRYIIKRISNRASIKKSIHPH 187

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            LRHS+ATH+++NG  +  IQS+LGH +  TT+IY  ++ K
Sbjct: 188 QLRHSYATHMINNGAPIDVIQSLLGHEKSETTKIYAQLSGK 228


>gi|89147504|gb|ABD62612.1| integrase [uncultured bacterium]
          Length = 164

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 73/156 (46%), Gaps = 38/156 (24%)

Query: 184 DQSTLRIQ-GKGDKIRIVPL-------LPSVRKA--ILEYYDLCPFDLNLNIQLPL---- 229
           D  T+ ++ GKG K R+VPL       L S+ KA  I    DL       ++  P+    
Sbjct: 8   DTGTMMVRDGKGQKDRVVPLPQSSIEGLKSILKARRITYEEDLAAGIGEASLPTPISNKY 67

Query: 230 ------------FRG------------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
                       F G            +R   ++    QR I++     G+    T HTL
Sbjct: 68  PNAGKEWIWQHVFAGSRLSLDPRSEGTVRRHHVHESGLQRSIKKAAISAGITKRVTTHTL 127

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           RHSFATHLL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 128 RHSFATHLLESGADIRTVQELLGHKDVSTTMIYTHV 163


>gi|169334405|ref|ZP_02861598.1| hypothetical protein ANASTE_00805 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259122|gb|EDS73088.1| hypothetical protein ANASTE_00805 [Anaerofustis stercorihominis DSM
           17244]
          Length = 353

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 140/299 (46%), Gaps = 32/299 (10%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYEC-DTRQFLIFLAFYTEEKITIQTIR-QLS 67
           + FE L E      +L+  + +S   L + +  D   F  +L++YT+E    +  + QLS
Sbjct: 52  IFFEYLIENHPLFTHLKDIKDISLSDLDNVKAVDLEDFTEYLSYYTKEHYKNENSKVQLS 111

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILN--MRNLKKS-- 122
            +               +R   R LS ++SF KY  KK  I T   +L    +N +K   
Sbjct: 112 NS---------------NRGKMRKLSTLRSFYKYYFKKEMIKTNPTVLVDLPKNYEKPII 156

Query: 123 ----NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
               N +   L+E ++   +    L   ++TK    R+ AI+ LL G G+RISE + L  
Sbjct: 157 RLEPNEVANLLDEIESGKSLTPAQLKYHNKTK---VRDLAIVTLLVGTGIRISECVGLNV 213

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
            ++  +  +  +  KG    I+ +   VR+A+L Y      +++   +  LF  ++ K +
Sbjct: 214 NDVDFNNDSFVVTRKGGNKTILYMPEEVREALLRYLRETRENIDTE-ESALFLSLQNKRM 272

Query: 239 NPGVFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
                Q+ +++  + + +PL + + H LR ++ T+L    GD+  +  +LGH  ++TT+
Sbjct: 273 TQSSIQKMLKKYTK-IVVPLKNISPHKLRSTYGTNLYKETGDIYLVADVLGHKDVNTTK 330


>gi|303258389|ref|ZP_07344392.1| integrase/recombinase [Burkholderiales bacterium 1_1_47]
 gi|302858835|gb|EFL81923.1| integrase/recombinase [Burkholderiales bacterium 1_1_47]
          Length = 320

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 8/159 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           RN AI YL+ GCGLR +E   L  + +     + +I GKG+K R +    +V   +  ++
Sbjct: 152 RNRAIFYLMLGCGLRRAEVCELKVKQVSLKSRSAKIIGKGNKERNIYFPDAVLDVLKIWF 211

Query: 215 DLCPFDLNLNIQLPLFRGIRGK-------PLNPGVFQRYIRQL-RRYLGLPLSTTAHTLR 266
           +    + N +    +F  I  K        L+P    R I++L      L    T H LR
Sbjct: 212 EFRQLNKNESDAGFVFGRIDNKQRLHLDIALDPSSVTRIIKKLVSETENLEGRLTPHDLR 271

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +FAT L+S   D+  +Q ++GH  ++TT  Y   + +N
Sbjct: 272 RTFATRLISKNVDIVEVQKLMGHASVATTGNYVRKDEEN 310


>gi|134044556|ref|YP_001101862.1| phage integrase [Yersinia ruckeri]
 gi|133904919|gb|ABO40936.1| phage integrase [Yersinia ruckeri]
          Length = 336

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 131/274 (47%), Gaps = 30/274 (10%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102
           +RQ +        + I  Q +R  +++ +R        + +GD    ++ + I ++L  L
Sbjct: 56  SRQTMSSFLNIVAKMIGFQNLRDCAWSSMRRHHILAVLEMLGDAG--KAPATINTYLSAL 113

Query: 103 KK--------RKITTES--NILNMRNLKKSNSLP--RALNEKQALTLVDNVLLHTSHETK 150
           K         ++I T+S  +I  +R+++ S  LP  RAL   +    + ++      ++ 
Sbjct: 114 KGVALEAWTMKQIDTDSFQHIKQVRSVRGSR-LPKGRALERHE----IRSLFFTCESDSS 168

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
               R++AIL +L GCGLR SE ++L  ++++     L++ GKG+K R+  +     K +
Sbjct: 169 AKGLRDAAILGVLLGCGLRRSEIVALDMESMIYKDRALKVLGKGNKERMAYVPGGAWKRL 228

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIR------GKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            ++ +    ++    + PLF  IR      G+ ++       +   R   GL      H 
Sbjct: 229 DKWVE----EVRGTHEGPLFPRIRRFDDVTGERMSDQAIYHILETRRVEAGLE-KFAPHD 283

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           LR +FA+ +L NG D+ +++  +GH  ++TTQ Y
Sbjct: 284 LRRTFASSMLDNGEDIVTVKDAMGHSSIATTQKY 317


>gi|170690854|ref|ZP_02882020.1| integrase family protein [Burkholderia graminis C4D1M]
 gi|170144103|gb|EDT12265.1| integrase family protein [Burkholderia graminis C4D1M]
          Length = 408

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 127/292 (43%), Gaps = 26/292 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            W+++   ERG +  T+  ++  T QFL +         T + +  L   +I A+  +  
Sbjct: 120 KWMRD---ERGFTPSTVAQWQSRTTQFLQWCV------DTDRRLEDLQPDDIDAYFIQN- 169

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTL 137
             + G  S+K  +  ++ +L+Y   + +     +  L    +    SLP A       T 
Sbjct: 170 ASRWGRISMKGVMGALRIYLRYSATQGLCDSRLAAALRTPRVYTQESLPYAPR----WTD 225

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
           V  +L  T+ + K  D RN AIL LL   G+R  E ++L    +     TL + + K  +
Sbjct: 226 VQQILATTATD-KPADIRNRAILMLLSIYGMRRGEVVALRLDQVNWAGRTLHVFRLKRRQ 284

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRG--KPLNPGVFQRYIRQLRRY 253
            ++ PLLP+V +A+  Y D     +      P +F G+    +PL P      +    + 
Sbjct: 285 PQVYPLLPTVAEALASYID----TVRPPASAPQIFLGLHAPHRPLTPQAVFDLVNDRFKA 340

Query: 254 LGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           LG+ +     H LRH+ A  L+  G  L+ I   LGH   S T  Y  V+ +
Sbjct: 341 LGIEVKHRGPHALRHACAARLVDQGLSLKEIGDHLGHHSASATMTYAKVDMR 392


>gi|115379507|ref|ZP_01466601.1| tyrosine recombinase XerC [Stigmatella aurantiaca DW4/3-1]
 gi|115363485|gb|EAU62626.1| tyrosine recombinase XerC [Stigmatella aurantiaca DW4/3-1]
          Length = 182

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 86/179 (48%), Gaps = 11/179 (6%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           +LE E+G S  T+++Y  D   F  +L    +  +   T     +  IR ++        
Sbjct: 14  HLEHEKGASPHTVRNYLIDLVDFEKYLVGTMKLSLLAGT-----HAAIRGYLGTLSVDH- 67

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
              S  R L+ IKSF KYL ++K+ + S    +++ K   SLP+ L   +   +++   L
Sbjct: 68  APASRGRRLASIKSFYKYLVRQKLLSASPAKLVKSPKLPKSLPKVLPVDEVFAILEMPSL 127

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
            T      +  R+ AIL +LYG GLRISE   L   ++      +R+ GKG K R+ P+
Sbjct: 128 KT-----VLGLRDRAILEILYGGGLRISELCGLNLLDVDRSGRIVRVMGKGGKERLCPV 181


>gi|222823741|ref|YP_002575315.1| integrase/recombinase [Campylobacter lari RM2100]
 gi|222538963|gb|ACM64064.1| integrase/recombinase [Campylobacter lari RM2100]
          Length = 355

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 130/300 (43%), Gaps = 56/300 (18%)

Query: 45  QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK 104
           ++L+F   Y+ ++I  + +      EI A IS      + D S K     + +F  +L K
Sbjct: 85  EYLLFYKLYSLKQIDEELL-----VEILASIS----ASLSDASKKNYRIAVINFFAFLDK 135

Query: 105 RKITTESNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
           +    +   +   NLK        +   LP  ++E +    +D +          ID +N
Sbjct: 136 QNEEEQKAHIFDINLKNWAGISGSRGVKLPEYMSEDEVGKFLDAI--------DTIDFKN 187

Query: 157 SAILYLLYG-----CGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIV--------P 201
           + I   L        G+R+SEA+++  ++I +  D   +RI+ KG+K R+V         
Sbjct: 188 NTIRNRLIIKIIIFTGIRVSEAINIKLKDISEENDLYIIRIRAKGNKYRVVMIKKELIEH 247

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLST 260
           LL  VR   L Y  L            LF    GK L      R + Q+    G+     
Sbjct: 248 LLKDVRVNYLSYDGL------------LFVNRNGKALTQAYISRIVEQILFKAGIRKQKN 295

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS---KNGGDWMMEIYDQT 317
            AH LRH+FAT L     DL  +Q  LGH  L+T++IYT+ ++   K   +   +++D+T
Sbjct: 296 GAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNEKLKLAAEVAKKLHDKT 355


>gi|297379871|gb|ADI34758.1| Tyrosine recombinase xerD [Helicobacter pylori v225d]
          Length = 356

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 92/194 (47%), Gaps = 14/194 (7%)

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           N    N LP  LN ++    ++ +       +  +  RN  ++ ++   G+R +EAL L 
Sbjct: 158 NQSAGNKLPTHLNNEELEKFLEGI--DKIEMSAKVRTRNRLLIKIIVFTGMRSNEALQLK 215

Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            ++   +    T+ I+GKGDK R V L    + S+ K  L   +L P   +L     LF 
Sbjct: 216 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLIERELYPVKNDL-----LFC 270

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +G  L      + + ++  + GL      AH LRHSFAT L     DL  +Q  LGH 
Sbjct: 271 NQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 330

Query: 291 RLSTTQIYTNVNSK 304
            L+T++IYT+ + +
Sbjct: 331 SLNTSRIYTHFDKQ 344


>gi|253577466|ref|ZP_04854781.1| integrase/recombinase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843166|gb|EES71199.1| integrase/recombinase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 339

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 91/215 (42%), Gaps = 17/215 (7%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           +  IK F  +L +     ++   +++  K       +  E+Q +      L     +  +
Sbjct: 113 IKAIKRFFTFLHEEGWIPDNPAAHLKTRKGHQPTIPSFTEEQVV-----ALFKQPDQNTF 167

Query: 152 IDARNSAILYLLYGCGLRISEALSL-TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
              R+  +L L+   GLR+ E + L T Q  + D   L + GK  K R +P    VRK +
Sbjct: 168 TGFRDFVMLSLILDTGLRVGEMIKLKTSQVDIKDSQLLGVIGKSKKPRDIPFCDDVRKLL 227

Query: 211 LEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLR 266
           + Y       +     +P    F  + G+ L    FQ  + Q  +  G+  +  + HTLR
Sbjct: 228 IRY-------IKARGDVPSQYFFVTLHGRQLGVRTFQDTLHQYGKDAGITNVRVSPHTLR 280

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H+FA   +   GD  S+Q ILGH      + Y N+
Sbjct: 281 HTFAKMYILQDGDPYSLQDILGHTSQDMVKKYVNL 315


>gi|332884384|gb|EGK04648.1| hypothetical protein HMPREF9456_03401 [Dysgonomonas mossii DSM
           22836]
          Length = 324

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 17/156 (10%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDL 216
            +L ++Y CG R++E L +  Q++  D   +R+   KG K R V + PS+R+ +LE Y  
Sbjct: 140 VLLRIMYCCGTRVTETLRIRKQDVDIDNGIIRLMVTKGSKERYVVMSPSLRQ-LLEEYAG 198

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA------HTLRHSFA 270
             F    N   P+F    G+PL     Q + R++ R  GLP +++       H  RH+FA
Sbjct: 199 KTFSTLENTD-PIFSNRHGQPLTEPTLQSFHRKILRLAGLPAASSTGNTKRLHDWRHTFA 257

Query: 271 TH----LLSNGGDLR----SIQSILGHFRLSTTQIY 298
            +    ++ NG DL      + + LGH  +  T+ Y
Sbjct: 258 VYAFKQMVENGEDLYVSLPVLSAYLGHKSIMATEYY 293


>gi|171057457|ref|YP_001789806.1| integrase family protein [Leptothrix cholodnii SP-6]
 gi|170774902|gb|ACB33041.1| integrase family protein [Leptothrix cholodnii SP-6]
          Length = 337

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 130/299 (43%), Gaps = 26/299 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI-- 75
           +Q + + L  +R +S  T+  Y      FL F +    +  T   +  +    I AF+  
Sbjct: 17  QQFFTEYLVAQRAVSPRTVACYRDALSLFLGFASHKLGKAPTAMQLADIRPELILAFLDH 76

Query: 76  -SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
             + R   +  R+L+  L+ +++FLK+  +R +T       + +++++ ++P    E+  
Sbjct: 77  LEQGRKNTVRSRNLR--LTALRAFLKFAARRDVTA------LHDIERALAVPMKRFERPM 128

Query: 135 LTLVDN----VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLR 189
           L  +       +L    E  W   R+  +L +LY  G R+SE + +   + I+D  + + 
Sbjct: 129 LGFLTRPEMLAVLGQPGE-NWSSQRDHLLLAMLYNTGARVSEMIGVRVVDVILDGGACVH 187

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIR 248
           + GKG K+R +PL  S    I  +  L P    L  +  L     G+ +    V QR   
Sbjct: 188 LHGKGRKLRSIPLWKSTVVEIRAWLRLNPV---LRGEAALLPNRDGQAMCRSNVTQRLSL 244

Query: 249 QLRRYLGLPLS-----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            + R      S      + HTLRH+ A HLL +G     I   LGH   +TT  Y   +
Sbjct: 245 AVTRATAEQPSLATKRVSPHTLRHTSAMHLLQSGVPFNVIALWLGHESTTTTHRYVEAD 303


>gi|89147470|gb|ABD62595.1| integrase [uncultured bacterium]
          Length = 163

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 45/74 (60%)

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           P    +R   + P V  + + +  R   +    T HTLRHSFATHLL NG D+R+IQ +L
Sbjct: 89  PRSDAVRRHHILPPVVHQALARAVRETAITKHITPHTLRHSFATHLLQNGTDIRTIQELL 148

Query: 288 GHFRLSTTQIYTNV 301
           GH  LSTT IYT+V
Sbjct: 149 GHNDLSTTMIYTHV 162


>gi|332673521|gb|AEE70338.1| tyrosine recombinase XerC [Helicobacter pylori 83]
          Length = 356

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 92/194 (47%), Gaps = 14/194 (7%)

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           N    N LP  LN ++    ++ +       +  +  RN  ++ ++   G+R +EAL L 
Sbjct: 158 NQSAGNKLPTHLNNEELEKFLEGI--DKIEMSAKVRTRNRLLIKIIVFTGMRSNEALQLK 215

Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            ++   +    T+ I+GKGDK R V L    + S+ K  L   +L P   +L     LF 
Sbjct: 216 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLIERELYPVKNDL-----LFC 270

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +G  L      + + ++  + GL      AH LRHSFAT L     DL  +Q  LGH 
Sbjct: 271 NQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 330

Query: 291 RLSTTQIYTNVNSK 304
            L+T++IYT+ + +
Sbjct: 331 SLNTSRIYTHFDKQ 344


>gi|134044785|ref|YP_001102264.1| integrase/recombinase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|134047110|ref|YP_001102052.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|165938094|ref|ZP_02226654.1| integrase [Yersinia pestis biovar Orientalis str. IP275]
 gi|229516079|ref|ZP_04405529.1| integrase [Vibrio cholerae RC9]
 gi|237640345|ref|YP_002891200.1| site-specific recombinase, phage integrase family protein
           [Escherichia coli]
 gi|237810080|ref|YP_002894520.1| site-specific recombinase, phage integrase family protein
           [Escherichia coli]
 gi|237810260|ref|YP_002894699.1| site-specific recombinase, phage integrase family protein
           [Salmonella enterica]
 gi|300836964|ref|YP_003754018.1| integrase/recombinase [Klebsiella pneumoniae]
 gi|300927180|ref|ZP_07142917.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|133905029|gb|ABO41044.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|133905319|gb|ABO42081.1| integrase/recombinase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165914117|gb|EDR32734.1| integrase [Yersinia pestis biovar Orientalis str. IP275]
 gi|229346859|gb|EEO11827.1| integrase [Vibrio cholerae RC9]
 gi|229561564|gb|ACQ77767.1| site-specific recombinase, phage integrase family protein
           [Escherichia coli]
 gi|229561744|gb|ACQ77946.1| site-specific recombinase, phage integrase family protein
           [Salmonella enterica]
 gi|229561936|gb|ACQ78137.1| site-specific recombinase, phage integrase family protein
           [Escherichia coli]
 gi|299474768|gb|ADJ18592.1| integrase/recombinase [Klebsiella pneumoniae]
 gi|300416847|gb|EFK00158.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|324008197|gb|EGB77416.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 57-2]
 gi|327536617|gb|AEA95450.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Dublin]
          Length = 336

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 131/274 (47%), Gaps = 30/274 (10%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102
           +RQ +        + I  Q +R  +++ +R        + +GD    ++ + I ++L  L
Sbjct: 56  SRQTMSSFLNIVAKMIGFQNLRDCAWSSMRRHHILAVLEMLGDAG--KAPATINTYLSAL 113

Query: 103 KK--------RKITTES--NILNMRNLKKSNSLP--RALNEKQALTLVDNVLLHTSHETK 150
           K         ++I T+S  +I  +R+++ S  LP  RAL   +    + ++      ++ 
Sbjct: 114 KGVALEAWTMKQIDTDSFQHIKQVRSVRGSR-LPKGRALERHE----IRSLFFTCESDSS 168

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
               R++AIL +L GCGLR SE ++L   +++     L++ GKG+K R+  +     K +
Sbjct: 169 AKGLRDAAILGVLLGCGLRRSEIVALDMGSMIYKDRALKVLGKGNKERMAYVPGGAWKRL 228

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIR------GKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            ++ +    ++    + PLF  IR      G+ ++       +   R   GL +    H 
Sbjct: 229 DKWVE----EVRGTHEGPLFPRIRRFDDVTGERMSDQAIYHILETRRVEAGLEM-FAPHD 283

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           LR +FA+ +L NG D+ +++  +GH  ++TTQ Y
Sbjct: 284 LRRTFASSMLDNGEDIVTVKDAMGHSSIATTQKY 317


>gi|89147400|gb|ABD62560.1| integrase [uncultured bacterium]
          Length = 163

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 44/64 (68%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           ++    Q+ +++     G+P   + HTLRHSFATHLL NG D+R++Q +LGH  +STT I
Sbjct: 99  VSESALQKAMKEAIHRAGVPKRGSCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMI 158

Query: 298 YTNV 301
           YT+V
Sbjct: 159 YTHV 162


>gi|83722829|gb|ABC41686.1| integrase [uncultured bacterium]
          Length = 163

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 46/64 (71%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           ++ G   R +++  +  G+    +AHTLRHSFATHL+ +G D+R++Q +LGH  ++TTQI
Sbjct: 99  VDDGALSRALKKACKLAGIMKPVSAHTLRHSFATHLIESGYDIRTVQELLGHKDVATTQI 158

Query: 298 YTNV 301
           YT+V
Sbjct: 159 YTHV 162


>gi|309796487|ref|ZP_07690895.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
 gi|308119992|gb|EFO57254.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
          Length = 338

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 131/274 (47%), Gaps = 30/274 (10%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102
           +RQ +        + I  Q +R  +++ +R        + +GD    ++ + I ++L  L
Sbjct: 58  SRQTMSSFLNIVAKMIGFQNLRDCAWSSMRRHHILAVLEMLGDAG--KAPATINTYLSAL 115

Query: 103 KK--------RKITTES--NILNMRNLKKSNSLP--RALNEKQALTLVDNVLLHTSHETK 150
           K         ++I T+S  +I  +R+++ S  LP  RAL   +    + ++      ++ 
Sbjct: 116 KGVALEAWTMKQIDTDSFQHIKQVRSVRGSR-LPKGRALERHE----IRSLFFTCESDSS 170

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
               R++AIL +L GCGLR SE ++L   +++     L++ GKG+K R+  +     K +
Sbjct: 171 AKGLRDAAILGVLLGCGLRRSEIVALDMGSMIYKDRALKVLGKGNKERMAYVPGGAWKRL 230

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIR------GKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            ++ +    ++    + PLF  IR      G+ ++       +   R   GL +    H 
Sbjct: 231 DKWVE----EVRGTHEGPLFPRIRRFDDVTGERMSDQAIYHILETRRVEAGLEM-FAPHD 285

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           LR +FA+ +L NG D+ +++  +GH  ++TTQ Y
Sbjct: 286 LRRTFASSMLDNGEDIVTVKDAMGHSSIATTQKY 319


>gi|317012487|gb|ADU83095.1| integrase-recombinase protein [Helicobacter pylori Lithuania75]
          Length = 363

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 14/194 (7%)

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           N    N LP  LN ++    ++++       +  + ARN  ++ ++   G+R +EAL L 
Sbjct: 165 NQSAGNKLPTHLNNEELEKFLESI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 222

Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            ++   +    T+ I+GKGDK R V L    + S+ K  L    L P   +L     LF 
Sbjct: 223 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLIERVLYPVKNDL-----LFC 277

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +G  L      + + ++  + GL      AH LRHSFAT L     DL  +Q  LGH 
Sbjct: 278 NQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 337

Query: 291 RLSTTQIYTNVNSK 304
            L+T++IYT+ + +
Sbjct: 338 SLNTSRIYTHFDKE 351


>gi|30248467|ref|NP_840537.1| Phage integrase [Nitrosomonas europaea ATCC 19718]
 gi|30138353|emb|CAD84361.1| Phage integrase [Nitrosomonas europaea ATCC 19718]
          Length = 292

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 39/183 (21%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDL---C 217
           LLYG G+R+ E + L  +++  ++  + I+ GKG K R+  +LP      L+ + L    
Sbjct: 102 LLYGTGMRLMECVRLRVKDVDFERGEILIRDGKGSKDRVT-MLPESLAGPLQAHLLHRRT 160

Query: 218 PFDLN-----LNIQLP--------------LFRGI---------------RGKPLNPGVF 243
            FD +      ++ LP              +++ I               R   ++  + 
Sbjct: 161 LFDDDSRLGKASVYLPDALERKYPNAATDWVWQYIFSSGSFSIDPRSGTERRHHIDEKLL 220

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           QR +++  +  G+    T HTLRHSFATHLL +G D+R+IQ +LGH  + TT IYT+V +
Sbjct: 221 QRAMKKAVQASGITKLATPHTLRHSFATHLLDSGYDIRTIQELLGHKDVHTTMIYTHVLN 280

Query: 304 KNG 306
           K G
Sbjct: 281 KGG 283


>gi|118602010|ref|YP_908710.1| integrase [Photobacterium damselae subsp. piscicida]
 gi|118614748|ref|YP_908531.1| integrase [Photobacterium damselae subsp. piscicida]
 gi|118596839|dbj|BAF38143.1| integrase [Photobacterium damselae subsp. piscicida]
 gi|118597019|dbj|BAF38322.1| integrase [Photobacterium damselae subsp. piscicida]
          Length = 307

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 131/274 (47%), Gaps = 30/274 (10%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102
           +RQ +        + I  Q +R  +++ +R        + +GD    ++ + I ++L  L
Sbjct: 27  SRQTMSSFLNIVAKMIGFQNLRDCAWSSMRRHHILAVLEMLGDAG--KAPATINTYLSAL 84

Query: 103 KK--------RKITTES--NILNMRNLKKSNSLP--RALNEKQALTLVDNVLLHTSHETK 150
           K         ++I T+S  +I  +R+++ S  LP  RAL   +    + ++      ++ 
Sbjct: 85  KGVALEAWTMKQIDTDSFQHIKQVRSVRGSR-LPKGRALERHE----IRSLFFTCESDSS 139

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
               R++AIL +L GCGLR SE ++L   +++     L++ GKG+K R+  +     K +
Sbjct: 140 AKGLRDAAILGVLLGCGLRRSEIVALDMGSMIYKDRALKVLGKGNKERMAYVPGGAWKRL 199

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIR------GKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            ++ +    ++    + PLF  IR      G+ ++       +   R   GL +    H 
Sbjct: 200 DKWVE----EVRGTHEGPLFPRIRRFDDVTGERMSDQAIYHILETRRVEAGLEM-FAPHD 254

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           LR +FA+ +L NG D+ +++  +GH  ++TTQ Y
Sbjct: 255 LRRTFASSMLDNGEDIVTVKDAMGHSSIATTQKY 288


>gi|295110203|emb|CBL24156.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 322

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 129/314 (41%), Gaps = 58/314 (18%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E+ + E LK    +L   +IE G S  TLQ Y+      L  +           ++R+++
Sbjct: 41  EVPNTEFLK---MFLDAKKIE-GCSDRTLQYYKVTVEHLLSQIK---------TSVRKIT 87

Query: 68  YTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
             EIRA+++  ++  K  + ++      I SF  +L++     +S +  +  ++    + 
Sbjct: 88  TEEIRAYLADYQKNSKCSNVTIDNIRRNISSFFSWLEEEDYILKSPMRRIHKIRTKTVVK 147

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             + ++    L DN +          + R+ AI+ LLY  G+R+ E ++L   +I  +  
Sbjct: 148 SVITDEGIEKLRDNCM----------EIRDLAIIDLLYSTGIRVGELVNLNIDDIDLEGR 197

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF--- 243
              + GKGDK R V                  FD    + L  +   R K  NP +F   
Sbjct: 198 ECVVYGKGDKERRV-----------------YFDAKSKVHLMRYIAER-KDANPALFVTL 239

Query: 244 ------------QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
                       +  +RQL R L L      H  R + AT  +  G  +  +Q ILGH +
Sbjct: 240 DAPHDRLKISGVEIRLRQLGRKLELE-RIHPHKFRRTMATRAIDKGMPIEQVQKILGHSQ 298

Query: 292 LSTTQIYTNVNSKN 305
           + TT  Y  VN  N
Sbjct: 299 IDTTMQYAMVNQNN 312


>gi|264678575|ref|YP_003278482.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2]
 gi|262209088|gb|ACY33186.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2]
          Length = 333

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 83/183 (45%), Gaps = 37/183 (20%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207
           LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L P +R         
Sbjct: 139 LLYGTGMRISEGLQLWVKDLDFDHGTIIVREGKGSKDRALMLPESLAPGLREQLARARAW 198

Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                                  +A   +     F  + +   P    +R   +    FQ
Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R  ++     G+    T HTLRHSFA  LL +G D+R++Q +LGH  +STT IYT++   
Sbjct: 259 RAFKRAVDEAGVAKPATPHTLRHSFAAALLRSGYDIRTVQDLLGHSDISTTMIYTHMLKV 318

Query: 305 NGG 307
           +G 
Sbjct: 319 SGA 321


>gi|312193458|ref|YP_003991124.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|311217910|gb|ADP76513.1| integrase family protein [Geobacillus sp. Y4.1MC1]
          Length = 304

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 141/305 (46%), Gaps = 39/305 (12%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +L E + +LQ    E+G S  T+ SY  D  QFL  L     + +T   IR+     I+ 
Sbjct: 1   MLHEYETYLQ----EKGFSPNTVISYLNDVNQFLKDLHLRPGDYVTSADIRKW----IQQ 52

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            ++    + +   ++ R L+ ++SF  +  +R    ++ + ++++LK ++      + ++
Sbjct: 53  MLNPVEGKPLAISTINRRLNSLRSFYAWAVERHYIEQNPMKDIQDLKTADE-----DHEK 107

Query: 134 ALTLVDNV---LLHTSH----ETKWIDA-----RNSAILYLLYGCGLRISEALSLTPQNI 181
            + L +     LLH       +++ +D      R+ A++YLL   GLR+ E  +L   ++
Sbjct: 108 IMWLTEEEFEDLLHRMRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDL 167

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL--- 238
             +   +RI GKG K+R VP + ++  A LE  D   F   +  + P    +   P    
Sbjct: 168 DLEMKRIRIVGKGMKVRTVP-ISNILLAELE--DWLKFRAEMAKKKP---HVAASPYVFY 221

Query: 239 ---NPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLS 293
              +P    R I+++     LP    T H  RH+F   +L +   D+  ++ + GH  ++
Sbjct: 222 SQRSPKFSVRGIQRMIESYSLPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIA 281

Query: 294 TTQIY 298
           TT  Y
Sbjct: 282 TTSRY 286


>gi|38491991|gb|AAR22338.1| integrase/recombinase [Helicobacter pylori]
          Length = 355

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 130/276 (47%), Gaps = 29/276 (10%)

Query: 48  IFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKR 105
           +FL F Y ++ + +++ R LS  ++  F+ +   Q     S+ + +  ++ F  YL +KR
Sbjct: 77  LFLFFNYFKDNLKLRSFRMLSEEQVINFLFEL-AQNRKPSSMAKYVMYLRQFFDYLDRKR 135

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
           + + +  + N+   K   SLPR LN+K   + +  +L +    +   + RN  IL ++  
Sbjct: 136 RYSFDFTLKNLVFAKTKESLPRHLNDKDLKSFLKTLLDYKPATS--FEKRNKCILLIVIL 193

Query: 166 CGLRISEALSLTPQNIMDDQS--TLRIQGKGDK-----IRIVPLLPSVRKAILEYYDLCP 218
            GLR  E L++  ++I  ++   ++ IQGKG K     I+   L PS+   + + Y L  
Sbjct: 194 GGLRKCEVLNIELKHIQVEEQNYSILIQGKGRKERKAYIKKSLLEPSLNAWLSDEYRLKY 253

Query: 219 FDLNLNIQLPLFRGIRGKPLN--------PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           F+        LF+  + K  N        P +F+  + Q++ Y      T  H  RHSFA
Sbjct: 254 FN-----GAYLFKKDKQKAQNSLTLYNFIPLIFK--LAQIKHYK--QYGTGLHLFRHSFA 304

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           T +     DL      LGH  L +T+IY +   ++ 
Sbjct: 305 TLIYQEAQDLVLTSRALGHSSLLSTKIYIHTTQEHN 340


>gi|161867961|ref|YP_001598142.1| hypothetical protein pOU7519_99 [Salmonella enterica subsp.
           enterica serovar Choleraesuis]
 gi|161087340|gb|ABX56810.1| IntI1 [Salmonella enterica subsp. enterica serovar Choleraesuis]
          Length = 337

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 125/310 (40%), Gaps = 58/310 (18%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    FQR  ++     G+    T  T RHSFAT LL +G D+R++Q +LGH  +STT I
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPPTFRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311

Query: 298 YTNVNSKNGG 307
           YT+V    G 
Sbjct: 312 YTHVLKVGGA 321


>gi|258624140|ref|ZP_05719090.1| Integrase [Vibrio mimicus VM603]
 gi|258583571|gb|EEW08370.1| Integrase [Vibrio mimicus VM603]
          Length = 350

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 130/274 (47%), Gaps = 30/274 (10%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102
           +RQ +        + I  Q +R  +++ +R        + +GD    ++ + I ++L  L
Sbjct: 70  SRQTMSSFLNIVAKMIGFQNLRDCAWSSMRRHHILAVLEMLGDAG--KAPATINTYLSAL 127

Query: 103 KK--------RKITTES--NILNMRNLKKSNSLP--RALNEKQALTLVDNVLLHTSHETK 150
           K         ++I T+S  +I  +R+++ S  LP  RAL   +    + ++      ++ 
Sbjct: 128 KGVALEAWTMKQIDTDSFQHIKQVRSVRGSR-LPKGRALERHE----IRSLFFTCESDSS 182

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
               R++AIL +L GCGLR SE ++L   +++     L++ GKG+K R+  +     K +
Sbjct: 183 AKGLRDAAILGVLLGCGLRRSEIVALDMGSMIHKDRALKVLGKGNKERMAYVPGGAWKRL 242

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIR------GKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            ++ +    ++    + PLF  IR      G+ ++       +   R   GL      H 
Sbjct: 243 DKWVE----EVRGTHEGPLFPRIRRFDDVTGERMSDQAIYHILETRRVEAGLE-KFAPHD 297

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           LR +FA+ +L NG D+ +++  +GH  ++TTQ Y
Sbjct: 298 LRRTFASSMLDNGEDIVTVKDAMGHSSIATTQKY 331


>gi|308271068|emb|CBX27678.1| Integrase/recombinase [uncultured Desulfobacterium sp.]
          Length = 192

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 77/176 (43%), Gaps = 37/176 (21%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPL----LPSVRKAILEYYDL 216
           +LYGCGLR+ E + L    +  D   L +  GK  K R VPL    LP +R+ +    DL
Sbjct: 1   MLYGCGLRLFECIGLRVHCMNFDAGILTVHDGKRQKDRTVPLPETMLPELRRHLETLKDL 60

Query: 217 CPFDLNLN-----------------------------IQLPLFR---GIRGKPLNPGVFQ 244
              DL                                +QL   +   G R   L+  + Q
Sbjct: 61  HKRDLEKKYAGVFLVNALELKYKNAAKDFIWQWFFPAMQLTYEKKSGGYRRYHLHESLVQ 120

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           + I++      +    +AHT  HSFA+HLL    D+R+IQ +LGH  + TT IYT+
Sbjct: 121 KAIKKAVDKSRITKRASAHTFHHSFASHLLQANYDIRTIQELLGHSDVRTTMIYTH 176


>gi|90020074|ref|YP_525901.1| XerC/CodV family integrase/recombinase [Saccharophagus degradans
           2-40]
 gi|89949674|gb|ABD79689.1| Integron integrase [Saccharophagus degradans 2-40]
          Length = 373

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 109/241 (45%), Gaps = 50/241 (20%)

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           L YL KR +  E   L      K   LP   +  +A+ ++       SH    +   +  
Sbjct: 85  LSYLFKRYLKRELGDLAYTPSSKHKKLPTVFSHDEAMRVI-------SH----LQGVHQV 133

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC 217
           ++ L+YG GLR+ EA+ L  Q++      L I + KG K R   L  S+ + +  Y D+ 
Sbjct: 134 LVMLMYGSGLRVMEAVRLRVQDVDFANECLMIRESKGLKWRRTLLPKSLIEPLTIYRDIA 193

Query: 218 ----PFDLN-----------LNIQLP----------LFRG--IRGKPLNPGVFQRYI--- 247
                 DL            LN++ P          +F    +   P + GV +R+    
Sbjct: 194 LARHKADLADGYGSVYLPNALNVKYPNASKEPAWQYMFPAHHLSTDPRS-GVLRRHHMGE 252

Query: 248 RQLRRYLGLPLSTT-------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           + ++R + + L           HT RHSFAT+LL  G D+R+IQ +LGH  +STTQIYT+
Sbjct: 253 QSVQRVVKIALKEARIYKKAGCHTFRHSFATNLLRAGTDIRNIQEMLGHTDISTTQIYTH 312

Query: 301 V 301
           V
Sbjct: 313 V 313


>gi|238025595|ref|YP_002909827.1| Phage integrase family protein [Burkholderia glumae BGR1]
 gi|237880260|gb|ACR32591.1| Phage integrase family protein [Burkholderia glumae BGR1]
          Length = 779

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 81/178 (45%), Gaps = 34/178 (19%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI--------MDDQSTLRIQGKGDKIRIVP----- 201
           R++ +L L Y  GLR +E  + T  ++        ++D   LR+ GKG + R VP     
Sbjct: 467 RDAFVLLLAYATGLRRAELAAATTGDLSRKALDGALEDAYVLRVDGKGRRRREVPMPARL 526

Query: 202 --LLPSVRKAILEYYDL--CPFDLNLNIQLPLFRGIRGKPLNP--------GVFQRYIRQ 249
             LL +  +A  E   L   P D  L   L     + G  L+P        G+F R   +
Sbjct: 527 MDLLRAELRARAEPLSLETAPADTPLVAHL-----VTGAALHPNTIGALFKGIFARAAER 581

Query: 250 LR-RYLGLPLS---TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           L   Y G        + H LRH+FA H L  G D+R +Q++LGH  L+TT  Y   ++
Sbjct: 582 LAPSYPGAAADLQRASTHWLRHTFANHGLDAGADIRDMQALLGHASLATTTHYAKGDA 639


>gi|223369822|gb|ACM88780.1| integrase [uncultured bacterium]
          Length = 163

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 44/64 (68%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           ++  V Q  +++  R  G+    + HTLRHSFATHLL NG D+R++Q +LGH  +STT I
Sbjct: 99  VDENVLQVAVKRAVRASGVTKPASCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMI 158

Query: 298 YTNV 301
           YT+V
Sbjct: 159 YTHV 162


>gi|157502100|ref|YP_001485199.1| integrase/recombinase [Bacillus thuringiensis]
 gi|87133405|gb|ABD24315.1| integrase/recombinase [Bacillus thuringiensis]
          Length = 314

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 129/291 (44%), Gaps = 22/291 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+    E+G  + T++ YE   ++F+ +           ++I  +   E + F+ +   
Sbjct: 13  WLK----EQGKRENTIKQYETTLKEFIQWYEDTNGVVFQGESITPMDLQEWKQFLMEVAK 68

Query: 81  QKIGDR----SLKRSLSGIKSFLKYLKKRKITTESNILNM------RNLKKSNSLPRALN 130
              G +    ++   +  +K + K+L +    T++N+  M      +N   +  L R   
Sbjct: 69  TNSGKQLSVSTVSTKIGRVKPYFKFLYETN-RTQTNLGAMVKQPKIQNKNDAKWLDRISK 127

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            +    L D  L+    +  W + RN AI+ ++   GLR+SE   L   +I D   ++R 
Sbjct: 128 NRLMRYLEDVELIK---KNPWKNYRNLAIVNIMLQAGLRVSEVSKLKLDDIEDGFISVR- 183

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            GKG K R +P+   V  +I ++ +          N    LF   +  PL+    +   +
Sbjct: 184 DGKGGKARKIPMNSDVVNSINKWKEHRQIHQAFKENQTEYLFVSQKNGPLSVVGIENIFK 243

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            +R++ GL    T H LRH+F   L+  G  +  +  ++GH  ++TT+IY 
Sbjct: 244 TIRKHTGLE-ELTPHVLRHTFGHDLVQKGIPISYVAELMGHTDINTTKIYV 293


>gi|146301359|ref|YP_001195950.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146155777|gb|ABQ06631.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 305

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 79/156 (50%), Gaps = 10/156 (6%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYD- 215
           A+L + YGCGLR SE  +L  +++   +  + + QGKG+K R VP+  +V + + +Y   
Sbjct: 144 ALLSIAYGCGLRRSEIANLDLKDVSLIKGMIVVRQGKGNKRREVPMSDTVLEYLKKYIRN 203

Query: 216 -----LCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
                L   + N        RG R  G+ LN  +  + I Q  ++  +    T H LRHS
Sbjct: 204 ERPERLSGRNQNEEAFFINSRGRRSTGENLNE-ILSKMIEQTGKFELVQKEITLHCLRHS 262

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            A HL  N   +  I+S LGH +++TT IY   N K
Sbjct: 263 IAFHLAENNAGIDFIRSFLGHTQINTTYIYAVQNKK 298


>gi|103485566|ref|YP_615127.1| phage integrase [Sphingopyxis alaskensis RB2256]
 gi|98975643|gb|ABF51794.1| phage integrase [Sphingopyxis alaskensis RB2256]
          Length = 302

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 84/177 (47%), Gaps = 18/177 (10%)

Query: 141 VLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGD 195
           V+L  +   + +DA    ++ A L + YG GLR++E  +L   NI   +  LR++ GKG 
Sbjct: 109 VVLTMAEVKRLLDATRCLKHQAALSVAYGAGLRVAEVSALKVSNIDSKRMLLRVERGKGG 168

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL- 254
           + R   L   +   + +++           Q  L+R     P          RQL R + 
Sbjct: 169 RDRNAMLPEGLLLLLRDWWRAG------RQQGILYRDGWLFPGQGAAAHISTRQLHRVVV 222

Query: 255 ------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
                  +      HTLRHSFATHLL +G ++R IQ++LGH  L+TT  Y  V +K 
Sbjct: 223 EAAEAADIDKRVGPHTLRHSFATHLLEDGVNIRVIQALLGHANLNTTAFYLQVATKT 279


>gi|257091624|ref|YP_003165267.1| hypothetical protein CAP2UW1_4695 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048633|gb|ACV37820.1| hypothetical protein CAP2UW1_4695 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 318

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 118/254 (46%), Gaps = 24/254 (9%)

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLK-YLKKRKITTESNILNMRN 118
           + TI +LS  ++R FI++    ++GD     + + + + L+ YL+ R +  +S +     
Sbjct: 64  VVTIAKLSAADVRRFIAR----QLGDSPSHSAAAQVATALRSYLRYRTVCGDSVVRLSAA 119

Query: 119 LK-----KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
           +      K  SLPRAL   +    V  +L    +  K    R  AI+      GLR  E 
Sbjct: 120 ISSPVQWKLASLPRALKPDE----VQRLLAALPYGRK--PRRGYAIVRCALDMGLRAGEI 173

Query: 174 LSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF-- 230
            +L+   I   + T+ ++G K  +  I+PL  +  +A+ +Y      +   N    LF  
Sbjct: 174 ANLSIDAIDWREGTVTLKGTKSRRQDILPLPMATGQALADYLQ---HERLANPSRALFLC 230

Query: 231 -RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
            R  R  P+     +  IR+  R  GLP S + H LRH+ A  L+ NG  L+ +  +L H
Sbjct: 231 RRESRDIPITTYAVENVIRRACRRAGLPDSGS-HLLRHTLACRLVGNGSSLKEVADVLRH 289

Query: 290 FRLSTTQIYTNVNS 303
             L TT+IY  +++
Sbjct: 290 RSLETTRIYAKLDT 303


>gi|228942745|ref|ZP_04105273.1| Integrase/recombinase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228975855|ref|ZP_04136385.1| Integrase/recombinase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228982303|ref|ZP_04142579.1| Integrase/recombinase [Bacillus thuringiensis Bt407]
 gi|228777408|gb|EEM25699.1| Integrase/recombinase [Bacillus thuringiensis Bt407]
 gi|228783881|gb|EEM31930.1| Integrase/recombinase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228816956|gb|EEM63053.1| Integrase/recombinase [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 308

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 129/291 (44%), Gaps = 22/291 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+    E+G  + T++ YE   ++F+ +           ++I  +   E + F+ +   
Sbjct: 7   WLK----EQGKRENTIKQYETTLKEFIQWYEDTNGVVFQGESITPMDLQEWKQFLMEVAK 62

Query: 81  QKIGDR----SLKRSLSGIKSFLKYLKKRKITTESNILNM------RNLKKSNSLPRALN 130
              G +    ++   +  +K + K+L +    T++N+  M      +N   +  L R   
Sbjct: 63  TNSGKQLSVSTVSTKIGRVKPYFKFLYETN-RTQTNLGAMVKQPKIQNKNDAKWLDRISK 121

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            +    L D  L+    +  W + RN AI+ ++   GLR+SE   L   +I D   ++R 
Sbjct: 122 NRLMRYLEDVELIK---KNPWKNYRNLAIVNIMLQAGLRVSEVSKLKLDDIEDGFISVR- 177

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            GKG K R +P+   V  +I ++ +          N    LF   +  PL+    +   +
Sbjct: 178 DGKGGKARKIPMNSDVVNSINKWKEHRQIHQAFKENQTEYLFVSQKNGPLSVVGIENIFK 237

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            +R++ GL    T H LRH+F   L+  G  +  +  ++GH  ++TT+IY 
Sbjct: 238 TIRKHTGLE-ELTPHVLRHTFGHDLVQKGIPISYVAELMGHTDINTTKIYV 287


>gi|228990374|ref|ZP_04150339.1| Integrase/recombinase [Bacillus pseudomycoides DSM 12442]
 gi|228768900|gb|EEM17498.1| Integrase/recombinase [Bacillus pseudomycoides DSM 12442]
          Length = 306

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 117/273 (42%), Gaps = 11/273 (4%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            LS  T+QSY     +F  F +    E I  + IR+ +      +  K R   +  R+ K
Sbjct: 18  NLSPRTIQSYMATLHEFQEFCS--ERELIDTRDIREATVKSYLMYCQKTRGNNVVTRNTK 75

Query: 90  RSLSGIKSFLKYLKKRKITTE-SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
             L  +K F  YL+   I +E  N +    L K +       ++    ++       +  
Sbjct: 76  --LHHLKIFFNYLQHEDIISEKENPIRKMKLAKEDIKIEVFQDEHIKQMLRYYRRLKTRN 133

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
             +   R+  I+  L G G R+ E +++    +     T+ + GK  K + VPL   + K
Sbjct: 134 KSFYAYRDHTIIIFLLGTGSRLGELINIRWSELDLVNQTVTLFGKARKQQTVPLTNKLVK 193

Query: 209 AILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTL 265
              EY      +L    +LP  +F    GK ++P   +   ++L++ +    +  +AHT 
Sbjct: 194 EFCEYKVFMERELG---RLPEYVFTTREGKQMSPNSVKLIFKRLKQVMNFSDVRLSAHTF 250

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           RH+FA   L  G D+ ++Q +L H  L  T+ Y
Sbjct: 251 RHTFAHRCLMAGMDVFTLQRMLRHSNLRMTERY 283


>gi|67077924|ref|YP_245544.1| integrase-recombinase protein [Bacillus cereus E33L]
 gi|66970230|gb|AAY60206.1| integrase-recombinase protein [Bacillus cereus E33L]
          Length = 285

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 105/210 (50%), Gaps = 25/210 (11%)

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           S I +++K++ K K+      L +R+++  N  P++L++KQ   L+  V        K  
Sbjct: 81  SAIVAYMKFVGKEKLLNHIKRLEVRHIR--NISPKSLSKKQRNQLLREV-------EKSQ 131

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRI--QGKGDKIRIVPLLPSVRKA 209
           + RN AI+Y +   G+R+ E ++L   ++ M ++S   I   GKG   R +PL P+  + 
Sbjct: 132 NLRNIAIVYTMLYTGVRVFELVALNRDDVEMKERSGFIIIRDGKGGISRKIPL-PAESRY 190

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
            L+ Y     DL + + L  FR    K     +F++Y               AH LRH++
Sbjct: 191 HLQNYLQKRTDLEVPLFLSNFRKRLSKRSAQRIFEQY------------GIGAHMLRHTY 238

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
              L+++G DL ++  ++GH  ++TT+ Y 
Sbjct: 239 GRELVASGIDLATVADLMGHNDVNTTKRYA 268


>gi|326943857|gb|AEA19747.1| integrase/recombinase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 314

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 129/291 (44%), Gaps = 22/291 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+    E+G  + T++ YE   ++F+ +           ++I  +   E + F+ +   
Sbjct: 13  WLK----EQGKRENTIKQYETTLKEFIQWYEDTNGVVFQGESITPMDLQEWKQFLMEVAK 68

Query: 81  QKIGDR----SLKRSLSGIKSFLKYLKKRKITTESNILNM------RNLKKSNSLPRALN 130
              G +    ++   +  +K + K+L +    T++N+  M      +N   +  L R   
Sbjct: 69  TNSGKQLSVSTVSTKIGRVKPYFKFLYETN-RTQTNLGAMVKQPKIQNKNDAKWLDRISK 127

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            +    L D  L+    +  W + RN AI+ ++   GLR+SE   L   +I D   ++R 
Sbjct: 128 NRLMRYLEDVELIK---KNPWKNYRNLAIVNIMLQAGLRVSEVSKLKLDDIEDGFISVR- 183

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            GKG K R +P+   V  +I ++ +          N    LF   +  PL+    +   +
Sbjct: 184 DGKGGKARKIPMNSDVVNSINKWKEHRQIHQAFKENQTEYLFVSQKNGPLSVVGIENIFK 243

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            +R++ GL    T H LRH+F   L+  G  +  +  ++GH  ++TT+IY 
Sbjct: 244 TIRKHTGLE-ELTPHVLRHTFGHDLVQKGIPISYVAELMGHTDINTTKIYV 293


>gi|114566277|ref|YP_753431.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337212|gb|ABI68060.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 340

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 132/289 (45%), Gaps = 24/289 (8%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEE-KITIQ--TIRQLSYTEIRAFIS---KRRTQKI 83
           G +  T+ SY      F++FL +  +E +I+     I  L+Y  I +++S   + R+  +
Sbjct: 23  GSTPQTIDSYR---HSFILFLTYMQDEYQISADRVDISDLTYENIVSYLSWLKEIRSNGV 79

Query: 84  GDRSLKRS-LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
             R+ +++ L+    FL Y     +     IL +   K        L  +    L+  V 
Sbjct: 80  STRNQRQAALNSFIRFLMYEFPEHLHEYQRILGIPVKKTPQKEISYLKTEGVALLISQVD 139

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVP 201
           L+  +       R+  IL LLY  G+R+SE + +  +++ + +  TL + GKG K R +P
Sbjct: 140 LNRQN-----GLRDYVILSLLYTTGIRVSELIQIRVKDLSLQEPFTLLVHGKGQKSRYIP 194

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-------PGVFQRYIRQLRRYL 254
           L+ S    I +Y     +D    +   LF+    K           G + +  R++   +
Sbjct: 195 LMRSTIPFIQKYLVQKRYDRPERLDEWLFKNHMSKSFTRQGINYIVGKYTKMAREIAPDM 254

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            +P   + H +RH+ A  L+ +G DL  I+ +LGH  + TT++Y   ++
Sbjct: 255 -IPADFSPHKMRHTTAMGLVESGVDLIYIRDLLGHESIKTTEVYARADA 302


>gi|87307065|ref|ZP_01089211.1| Integron integrase [Blastopirellula marina DSM 3645]
 gi|87290438|gb|EAQ82326.1| Integron integrase [Blastopirellula marina DSM 3645]
          Length = 354

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 47/69 (68%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           ++  +F R ++   +  GL    T+HT RHSFATHLL++G D+R++Q +LGH  + TT I
Sbjct: 270 IDESLFSRSLKAAVKQAGLTKRVTSHTFRHSFATHLLADGYDIRTVQELLGHKDVRTTMI 329

Query: 298 YTNVNSKNG 306
           YT+V ++ G
Sbjct: 330 YTHVLNRGG 338


>gi|302389546|ref|YP_003825367.1| integrase family protein [Thermosediminibacter oceani DSM 16646]
 gi|302200174|gb|ADL07744.1| integrase family protein [Thermosediminibacter oceani DSM 16646]
          Length = 310

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 19/223 (8%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL---- 142
           +L   +  +K F  YL++ +I  E N         +  +P    + +     D  +    
Sbjct: 74  TLNHKIRNLKIFFNYLEEIEIYDEKN-------NPAKPIPYLKEDVKIEVFTDYQIRQML 126

Query: 143 -----LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L T  +  W   R+  I+  L G G+R+ E ++L  ++I      + I GK    
Sbjct: 127 TYYRRLKTRDKAFWA-YRDYTIIVTLLGTGIRLGELVNLQWRHIDFVNQVMTIFGKKRIQ 185

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL- 256
           R +PL   + K + E+   C       +   +F   + +P+     +   ++L+  +   
Sbjct: 186 RSIPLTEKLVKELAEFKVFCERYFG-KLNDYVFVNSKNEPMTADAVKCMFKRLKEIMNFR 244

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            +  +AHT RH+FA   L NGGD+ S+Q ILGH ++  T  Y 
Sbjct: 245 DVRLSAHTFRHTFAHRFLMNGGDVFSLQKILGHSKIEMTMRYV 287


>gi|186474498|ref|YP_001863469.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198457|gb|ACC76419.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 418

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 121/278 (43%), Gaps = 15/278 (5%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RGL+  T +++     +FL+    +    I +   R++   ++  F+ +R ++ +  RS 
Sbjct: 136 RGLAASTRRNHRDRIGEFLV--NHFGNRSIDM---RRVKPRDVLNFVVER-SKGLSPRSA 189

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALTLVDNVLLHTS 146
                 ++++L+Y +     TES I  +  +       +PR L ++Q      +  LH  
Sbjct: 190 GALAGSLRTYLRYRQSVGDHTESLIAAIPKVAVWSMARIPRLLTKEQI-----SQFLHAF 244

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPS 205
                   R  A+  LL   GLR  E  +L   +I   + TLRIQ  K  ++  +PL   
Sbjct: 245 DTRTPSGQRGYAMARLLVDLGLRAGEVAALQLSDIDWREGTLRIQAAKCKRVDFLPLPVQ 304

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-HT 264
             +A+  Y                 R    +P+   V    +RQ     G P ++   H 
Sbjct: 305 TGRALANYVHDGRGRTPSRALFVRHRAPFDRPVTSAVVGCSVRQAYARCGWPATSMGPHL 364

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           LRHS A+ +LSNG  L+ I  +L H  L+TT IY+ ++
Sbjct: 365 LRHSLASRMLSNGASLKDIADVLRHRSLNTTMIYSKID 402


>gi|89147685|gb|ABD62701.1| integrase [uncultured bacterium]
          Length = 163

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 68/146 (46%), Gaps = 36/146 (24%)

Query: 192 GKGDKIRIVPLLPSVRKAILEY-------YDLCPFDLNLNIQLP---------------- 228
           GKG+K RIV L  SVR +++ +       +D    D    + LP                
Sbjct: 17  GKGNKDRIVMLPTSVRASLVHHLGRVRQLHDQDRVDGVSGVWLPEALSIKYPRADIEWGW 76

Query: 229 --LF--RGIRGKP---------LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
              F  +G+   P         L+     + I+       +  S + HTLRHSFATHLL 
Sbjct: 77  QWCFPAKGLSTDPRSGTVRRHHLHDNTLHKAIKTAASLARINKSVSCHTLRHSFATHLLE 136

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNV 301
           +G D+RS+Q +LGH  L TTQIYT+V
Sbjct: 137 SGADIRSVQELLGHESLETTQIYTHV 162


>gi|291529765|emb|CBK95351.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 367

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 103/224 (45%), Gaps = 16/224 (7%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL-----LHTS 146
           LS ++S   Y  +  I  ++ +L +R  K   ++P AL ++QA ++ D +L     +   
Sbjct: 128 LSALRSLYNYFLENDIVDKAPVLKIRQKKVDKTIPIALTDRQAESIYDTILGGSEQISAR 187

Query: 147 HETKWI--DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            E   I   AR+ AI  L    G+R+SE +SL  ++I  D+   +I  K     +V    
Sbjct: 188 QEASRIITSARDLAIYTLALHTGIRVSELVSLDVRDINLDEHCFKIIRKRGNEDVVYFDN 247

Query: 205 SVRKAILEYYD-LCPFDLNLNI---QLPLFRGIRGKPLNPGVFQRYIR-QLRRY--LGLP 257
           +    +L++ D        L I   +  LF   +GK     +  R +   +++Y  +  P
Sbjct: 248 TTENVLLDWLDERRNMKETLGIADDEDALFVSTKGKKRGTRLSVRSVEIMVKKYAQIAAP 307

Query: 258 LSTT--AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
             T   AH+LR S AT +     DL   QS+LGH  +STT  Y 
Sbjct: 308 EVTNFHAHSLRSSCATKIYDKSLDLVYTQSVLGHANISTTMRYV 351


>gi|89147628|gb|ABD62673.1| integrase [uncultured bacterium]
          Length = 163

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           P  R +R   +     Q  ++   R  G+  + + HT RHSFATHLL NG D+R++Q +L
Sbjct: 89  PRSREVRRHHVQEKNLQNAVKLALRRAGIAKAASCHTFRHSFATHLLENGSDIRTVQELL 148

Query: 288 GHFRLSTTQIYTNV 301
           GH  +STT IYT+V
Sbjct: 149 GHKDVSTTMIYTHV 162


>gi|229120912|ref|ZP_04250154.1| Site-specific recombinase, phage integrase [Bacillus cereus
           95/8201]
 gi|228662572|gb|EEL18170.1| Site-specific recombinase, phage integrase [Bacillus cereus
           95/8201]
          Length = 384

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 109/227 (48%), Gaps = 8/227 (3%)

Query: 80  TQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +Q IG  D ++   +  +K+F+ +  +++I +++        +K N+    L+  +  +L
Sbjct: 131 SQTIGLADETISSRIKRLKTFINWCLRQEIISKNPFNKFEGFRKDNTQIDILSVDELKSL 190

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKG 194
           +     +++   K    R+  +L+LL     RI+EAL L+P +I      + IQ    K 
Sbjct: 191 LKVAKSYSNKSFKHF--RDYVLLHLLVDGMFRITEALLLSPSDIDHTNRAVIIQSNNAKS 248

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K R VPL     + +++  +        ++   +F  + G+ L+     R +R+     
Sbjct: 249 RKTRTVPLSNKTYRLLMQLLEENE-AFEDDVDDLIFLSLSGRMLSKNNVLRDMRKYAIEA 307

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            +      H +RHS ATH LS+ GD+ S++ ILGH  L T  IY+++
Sbjct: 308 NIKKRFYLHLIRHSAATHYLSSSGDVESLRKILGHADLRTVLIYSHL 354


>gi|89147416|gb|ABD62568.1| integrase [uncultured bacterium]
          Length = 163

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 44/69 (63%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R   L+    QR +++    +GL    + H LRHSFATHLL  G D+R++Q +LGH  +
Sbjct: 94  VRRHHLHENALQRAVKETAVKVGLTKQMSCHVLRHSFATHLLEGGYDIRTVQELLGHADV 153

Query: 293 STTQIYTNV 301
           STT IYT+V
Sbjct: 154 STTMIYTHV 162


>gi|217032607|ref|ZP_03438095.1| hypothetical protein HPB128_11g1 [Helicobacter pylori B128]
 gi|298736017|ref|YP_003728542.1| hypothetical protein HPB8_521 [Helicobacter pylori B8]
 gi|216945677|gb|EEC24304.1| hypothetical protein HPB128_11g1 [Helicobacter pylori B128]
 gi|298355206|emb|CBI66078.1| conserved hypothetical protein [Helicobacter pylori B8]
          Length = 355

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 130/276 (47%), Gaps = 29/276 (10%)

Query: 48  IFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKR 105
           +FL F Y ++ + +++ R LS  ++  F+ +   Q     S+ + +  ++ F  YL +KR
Sbjct: 77  LFLFFNYFKDNLKLRSFRMLSEEQVINFLFEL-AQNRKTSSMAKYVMYLRQFFDYLDRKR 135

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
           + + +  + N+   K   SLPR LN+K   + +  +L +    +   + RN  IL ++  
Sbjct: 136 RYSFDFTLKNLAFAKTKESLPRHLNDKDLKSFLKTLLGYKPATS--FEKRNKCILLIVIL 193

Query: 166 CGLRISEALSLTPQNIMDDQS--TLRIQGKGDK-----IRIVPLLPSVRKAILEYYDLCP 218
            GLR  E L++  ++I  ++   ++ IQGKG K     I+   L PS+   + + Y L  
Sbjct: 194 GGLRKCEVLNIELKHIQVEEQNYSILIQGKGRKERKAYIKKSLLEPSLNAWLSDEYRLKY 253

Query: 219 FDLNLNIQLPLFRGIRGKPLN--------PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           F+        LF+  + K  N        P +F+  + Q++ Y      T  H  RHSFA
Sbjct: 254 FN-----GAYLFKKDKQKAQNSLTLYNFIPLIFK--LAQIKHYK--QYGTGLHLFRHSFA 304

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           T +     DL      LGH  L +T+IY +   ++ 
Sbjct: 305 TLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHN 340


>gi|154483513|ref|ZP_02025961.1| hypothetical protein EUBVEN_01217 [Eubacterium ventriosum ATCC
           27560]
 gi|149735423|gb|EDM51309.1| hypothetical protein EUBVEN_01217 [Eubacterium ventriosum ATCC
           27560]
          Length = 351

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 124/255 (48%), Gaps = 21/255 (8%)

Query: 56  EKITIQTIRQ-LSYTEIRAFISKRRTQKI-GDRSLKRSLSGIKSFLKYLKKRKI--TTES 111
           +KIT   I + L Y  +R ++++   +   G+R + R L+ +++  +Y  K++   T  +
Sbjct: 81  DKITATDIEEYLEY--LRYYVTEDGKEHTNGERGIMRKLACLRTLYRYFYKKESIKTNPA 138

Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLH---TSHETKWID---ARNSAILYLLYG 165
           +I++M  + +   +   L+  +   L+D V L    T  + K+ D    R+ AIL LL G
Sbjct: 139 SIVDMPKIHEKEIV--RLDADEVSVLLDQVELGDKLTKSQQKFHDKTKTRDMAILTLLLG 196

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD----LCPFDL 221
            G+R+SE + +   +I    S ++I+ KG    ++     V  A+L+Y +    + P D 
Sbjct: 197 TGMRVSECVGIDINDIDFKNSGIKIRRKGGNETVIYFGEEVENALLDYLEERKLIVPQDG 256

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
           + N    LF  ++ + +     +  +++    +      T H LR ++ T L    GD+ 
Sbjct: 257 HEN---ALFLSLQKRRIGVRAVENLVKKYSSLVTNLKKITPHKLRSTYGTALYKETGDIY 313

Query: 282 SIQSILGHFRLSTTQ 296
            +  +LGH  ++TT+
Sbjct: 314 LVADVLGHKDVNTTK 328


>gi|89147377|gb|ABD62549.1| integrase [uncultured bacterium]
          Length = 163

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 43/69 (62%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R    +P   Q+      R  G+    + H+LRHSFATHLL NG D+R++Q +LGH  +
Sbjct: 94  VRRHHTHPNSLQKAFHDAVRQAGVTKPASCHSLRHSFATHLLENGYDIRTVQELLGHSDV 153

Query: 293 STTQIYTNV 301
           STT IYT+V
Sbjct: 154 STTMIYTHV 162


>gi|331000358|ref|ZP_08324039.1| site-specific recombinase, phage integrase family [Parasutterella
           excrementihominis YIT 11859]
 gi|329572154|gb|EGG53819.1| site-specific recombinase, phage integrase family [Parasutterella
           excrementihominis YIT 11859]
          Length = 320

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 77/173 (44%), Gaps = 36/173 (20%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           RN AI YL+ GCGLR +E   L  + +     + +I GKG+K R +   P V   +L+ +
Sbjct: 152 RNRAIFYLMLGCGLRRAEVCELRVKQVSFKNRSAKIIGKGNKERTI-YFPDVVLDVLKTW 210

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPG-VFQRYIRQLRRYLGLPLST------------- 260
               F+         FR +    ++ G VF R   +LR YL   L               
Sbjct: 211 ----FE---------FRQLNKNEIDAGFVFGRIDNKLRLYLDTALDPSSVSRIIEKLVTE 257

Query: 261 --------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
                   T H LR +FAT L+S   D+  +Q ++GH  ++TT  Y   + +N
Sbjct: 258 TENLDSRLTPHDLRRTFATRLISKNVDIVEVQKLMGHASVATTGNYVRKDEEN 310


>gi|120402127|ref|YP_951956.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119954945|gb|ABM11950.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 364

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 86/184 (46%), Gaps = 12/184 (6%)

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           +++   LPR L  +++  L+ +          W   R+ +I  L+   GLR +E LS+  
Sbjct: 172 VREQRRLPRGLTRQESAALLGSF-------RSW---RDRSIGGLMLMSGLRSTEVLSVRV 221

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKP 237
            ++   +  +R+ GKG K R VP+   V  AI  Y  +   + +      + +G+ RG+P
Sbjct: 222 ADVDIARRWVRVLGKGSKERSVPIDTDVAGAIQTYLLVERPETDAEALFVVAKGVHRGQP 281

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L     +   R  R   G+  +   H LRHSF T L   G DL  IQ+++GH    +   
Sbjct: 282 LTAAGLRTVFRYHRERSGVS-AGHPHALRHSFGTALAEAGVDLSVIQALMGHDHADSAAA 340

Query: 298 YTNV 301
           Y ++
Sbjct: 341 YIHL 344


>gi|118470883|ref|YP_888435.1| transposase A [Mycobacterium smegmatis str. MC2 155]
 gi|118172170|gb|ABK73066.1| transposase A [Mycobacterium smegmatis str. MC2 155]
          Length = 346

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 100/227 (44%), Gaps = 27/227 (11%)

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           S  G K FL ++ K   +    +    +LK    LPR L   +  TL+D           
Sbjct: 118 SRGGWKPFLHHISKHMPSPRRTV----SLKAPKKLPRVLTPGEVQTLLDAC--------- 164

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTL-------RIQGKGDKIRIVP 201
               R+  +L LLY  G+RI EAL L   +I   + Q T+       R + K    RIVP
Sbjct: 165 -DRLRDRFLLALLYDAGMRIGEALGLRHSDIAAAERQVTVCRRDNDNRARAKSLTARIVP 223

Query: 202 LLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +   + +   +Y      DL+ + + + L+    G PL  G     +R+LRR   +    
Sbjct: 224 VSAELIRLYADYLHAEYGDLDSDYVFVNLWGRPHGHPLTYGAVYDLVRRLRRRTAIDFDP 283

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNG 306
             H LRH+ AT +L +G  L  +  +LGH  ++ T   Y ++N ++ 
Sbjct: 284 --HWLRHTAATRMLRDGIGLEVVAKLLGHANVTVTAATYGHLNVEDA 328


>gi|291546173|emb|CBL19281.1| Site-specific recombinase XerD [Ruminococcus sp. SR1/5]
          Length = 353

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 131/295 (44%), Gaps = 48/295 (16%)

Query: 38  SYECDTRQFLIFL----AFYTEEKI---TIQTIRQLSYTEIRAF---------ISKRRTQ 81
           SY  D R F  FL      + ++ +   TI  + Q+   ++  +             +T+
Sbjct: 48  SYAYDIRIFFQFLLDQNPMFKDKNMSDFTIDVLDQIKAVDLEEYEEFLKVYKSADSSKTE 107

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNIL-NMRNLKKSNSLPRALNEKQALTLVD 139
             G+R +KR +S ++SF  Y  K + ITT  ++L ++  +   N +   L+  +   L+D
Sbjct: 108 TNGERGVKRKISALRSFYAYYYKHEMITTNPSVLIDVPKIHDKNII--RLDTDEVAMLLD 165

Query: 140 NV------------LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            +            + H   +TK    R+ AI+ LL G G+R+SE + L  +++    + 
Sbjct: 166 YIENCGDTLTGQKRMYH--EKTK---DRDLAIVTLLLGTGIRVSECVGLDVEDVDFKNNG 220

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI------QLPLFRGIRGKPLNPG 241
           +++  KG    +V   P V KA+ +Y      ++  NI      +  LF   + + +   
Sbjct: 221 IKVTRKGGNEMVVYFGPEVEKALKKY-----LEVRENITPLAGHEHALFYSTQRRRIGVQ 275

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
             +  +++  R +      T H LR ++ T L    GD+  +  +LGH  ++TT+
Sbjct: 276 AIENLVKKYAREITTTKKITPHKLRSTYGTALYQETGDIYLVADVLGHKDVNTTK 330


>gi|300088762|ref|YP_003759284.1| integrase family protein [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299528495|gb|ADJ26963.1| integrase family protein [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 304

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 97/215 (45%), Gaps = 5/215 (2%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           SL R  + +++F  +  +  +  ++   ++R  +    LP  L   +   L+  +     
Sbjct: 83  SLHRMKAAVRAFFAWASEAGVVDDNPARSIRMHRLPRKLPVFLTAAEKKRLLKEL----K 138

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
             T +   R+ A++ +L G G+R+ E  +L   +I  D   LR++ KG+  ++  +   +
Sbjct: 139 GRTDFFALRDRAMIEVLLGTGIRLGELAALDMDDIDLDAKHLRVRAKGNVPQVNFIKTDL 198

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           R  +  Y           ++        G+     +  R    LR+  G+    T H LR
Sbjct: 199 RTLLRRYLAERRRHGRPEMEALFLSNRDGRLCQRQIANRLAHWLRKA-GIEKELTPHGLR 257

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H+FATHL     DL  +Q  LGH  +STTQIYT++
Sbjct: 258 HTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHL 292


>gi|38637701|ref|NP_942675.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527039|gb|AAP85789.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 333

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 127/292 (43%), Gaps = 24/292 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +++ L   R LSK T+ +Y    R+FL     + + ++ +  +R         F    + 
Sbjct: 44  YVEYLREVRALSKATIINYTPFIREFL--EDCFGDRRVRLSRLRAGDVVNFVQF----QA 97

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITT---ESNILNMRNLKKSNSLPRALNEKQALTL 137
           Q +  +  K   + ++SFL+Y   R   T    + +  + N     S+PR +  +Q   L
Sbjct: 98  QHLHLKRAKLMTAALRSFLRYACYRGDMTLDLAAAVPVVANWSM-QSIPRGIPPEQIQEL 156

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           + ++   T+     +  R+ AI+ LL   GLR  E   L   +I  +   L ++GK    
Sbjct: 157 LVSIDRRTA-----VGRRDYAIILLLARLGLRSGEVAFLDLDDIDWNTGVLSVRGKSGLR 211

Query: 198 RIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
             +PL   V KAI  Y            + L  + P F G R      G   R+  Q R 
Sbjct: 212 NGLPLPADVGKAIAAYLRYGRPQSTSRRVFLRAKAP-FTGFRSA-CGVGSIVRHSLQ-RA 268

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            +  P +T AH  RH+ A+ +L +G  LR I  +LGH    TT IYT V+ K
Sbjct: 269 GINAP-TTGAHQFRHALASQMLRHGASLREIGELLGHHHPQTTSIYTKVDIK 319


>gi|89147404|gb|ABD62562.1| integrase [uncultured bacterium]
          Length = 163

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 44/64 (68%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+  V Q+ ++   R  GL    + HTLRHSFA+HLL +G D+R++Q +LGH  +STT I
Sbjct: 99  LSETVLQKAVKHAIRQAGLDKRGSCHTLRHSFASHLLEDGYDIRTVQELLGHKDVSTTMI 158

Query: 298 YTNV 301
           YT+V
Sbjct: 159 YTHV 162


>gi|89147355|gb|ABD62538.1| integrase [uncultured bacterium]
          Length = 163

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/64 (51%), Positives = 42/64 (65%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           LN    QR ++      G+    T HT RHSFATHLL NG D+R++Q +LGH  +STTQI
Sbjct: 99  LNELSVQRAVKVAIGIAGINKPATPHTFRHSFATHLLENGYDIRTVQDLLGHKDVSTTQI 158

Query: 298 YTNV 301
           YT+V
Sbjct: 159 YTHV 162


>gi|255690724|ref|ZP_05414399.1| glutamine amidotransferase, class I [Bacteroides finegoldii DSM
           17565]
 gi|260623761|gb|EEX46632.1| glutamine amidotransferase, class I [Bacteroides finegoldii DSM
           17565]
          Length = 343

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 134/304 (44%), Gaps = 33/304 (10%)

Query: 21  WLQNLEIE-----RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           WL+   IE     R LS+ T  SY    R  + +++      I    I  ++   I  F+
Sbjct: 15  WLRPFLIEYLIVTRNLSRNTQMSYRDTFRMLVSYVSTLISIAIDNLKISDITTDVITKFL 74

Query: 76  SKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRK---ITTESNILNMRNLKKSNSLPRALNE 131
                + K+   S    L+ IK+F K+L  +    I    ++  + + K    +   +++
Sbjct: 75  DYLEIERKVSVSSRNNRLAAIKAFAKFLAWKSPEHIDWCHHVTLIPSKKTEKRMITYMDK 134

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM----DDQST 187
            +   L D  L    ++   I +R+  I+  +Y  G R+SE + +  +++          
Sbjct: 135 SEIEALADAPLKTCKYQG--IRSRDHVIILFMYNTGARVSEVIGVKVKDVAMPSKRGMPM 192

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQ 244
           + + GKG K RI PL         +++DL      ++ +LP   LF     +P++     
Sbjct: 193 VTLHGKGRKERICPLWE-------DFWDL--LKQFIDNKLPDDYLFLNRYNQPMSRFCIY 243

Query: 245 RYIRQLRRYLGLPLSTTA------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             I++  + + L   + A      H +RH+ ATHLL++G D+  +++ +GH  + TT IY
Sbjct: 244 EMIKKYSQDVILNHPSLANKRPSPHVIRHTTATHLLNSGADIDMVRNWMGHSSIDTTNIY 303

Query: 299 TNVN 302
             ++
Sbjct: 304 AEIS 307


>gi|196048148|ref|ZP_03115325.1| integrase/recombinase, phage integrase family [Bacillus cereus
           03BB108]
 gi|196020885|gb|EDX59615.1| integrase/recombinase, phage integrase family [Bacillus cereus
           03BB108]
          Length = 368

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 138/332 (41%), Gaps = 49/332 (14%)

Query: 16  KERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL-----AFYTEEKIT------IQT 62
           KE+  W  ++ +E +  LS  TL  Y  +   FL +L     A    E +T      I+T
Sbjct: 17  KEKMPWYIIEYIEEKTNLSPATLYGYLIEYEMFLQWLISSRLATSDGEGVTRIHEVPIET 76

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +  L   +++ F S    Q    +++ R+ S +KS   YL              RN+   
Sbjct: 77  LEHLPLKQVKRFKSYLERQGNKTKAVIRTFSALKSLFNYLTSNTEDDNGECYFYRNVMAK 136

Query: 123 NSLPRA-LNEKQALTLVDNVLLHTSHETKWID-------------------------ARN 156
             + +  ++       +  V+ H + + K++                           R+
Sbjct: 137 MEIHKEKIDAAARAKEISEVIFHNNDDIKFMRFLSNEYEQMLQETAPGKLRFFKRDRERD 196

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
            AIL L+ G GLR+SEA SLT  +I      +++  KGDK   +    +    + EY  +
Sbjct: 197 IAILSLILGTGLRVSEAASLTISSINFRTRYIKVIRKGDKKSSILATQTALDDVQEYLKV 256

Query: 217 ------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
                 CP D ++ + +  ++G   + ++    Q+   +  R        + H LRH++A
Sbjct: 257 RANRYKCPNDEDI-LFVTNYKGSYAQ-ISVNAIQKLTEKYTR--AFDEKKSPHKLRHTYA 312

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           T+  +   DL  + + +GH  + TT +YTN++
Sbjct: 313 TNHYNENKDLVLLANQMGHNSMETTSLYTNID 344


>gi|15645610|ref|NP_207786.1| integrase/recombinase (xerD) [Helicobacter pylori 26695]
 gi|2314140|gb|AAD08042.1| integrase/recombinase (xerD) [Helicobacter pylori 26695]
          Length = 355

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 130/276 (47%), Gaps = 29/276 (10%)

Query: 48  IFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKR 105
           +FL F Y ++ + +++ R LS  ++  F+ +   Q     S+ + +  ++ F  YL +KR
Sbjct: 77  LFLFFNYFKDNLKLRSFRMLSEEQVINFLFEL-AQNRKPSSMAKYVMYLRQFFDYLDRKR 135

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
           + + +  + N+   K   SLPR LN+K   + +  +L +    +   + RN  IL ++  
Sbjct: 136 RYSFDFTLKNLAFAKTKESLPRHLNDKDLKSFLKTLLDYKPATS--FEKRNKCILLIVIL 193

Query: 166 CGLRISEALSLTPQNIMDDQS--TLRIQGKGDK-----IRIVPLLPSVRKAILEYYDLCP 218
            GLR  E L++  ++I  ++   ++ IQGKG K     I+   L PS+   + + Y L  
Sbjct: 194 GGLRKCEVLNIELKHIQVEEQNYSILIQGKGRKERKAYIKKSLLEPSLNAWLSDEYRLKY 253

Query: 219 FDLNLNIQLPLFRGIRGKPLN--------PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           F+        LF+  + K  N        P +F+  + Q++ Y      T  H  RHSFA
Sbjct: 254 FN-----GAYLFKKDKQKAQNSLTLYSFIPLIFK--LAQIKHYK--QYGTGLHLFRHSFA 304

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           T +     DL      LGH  L +T+IY +   ++ 
Sbjct: 305 TLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHN 340


>gi|167768052|ref|ZP_02440105.1| hypothetical protein CLOSS21_02596 [Clostridium sp. SS2/1]
 gi|167710381|gb|EDS20960.1| hypothetical protein CLOSS21_02596 [Clostridium sp. SS2/1]
 gi|291561050|emb|CBL39850.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2]
          Length = 322

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 123/282 (43%), Gaps = 34/282 (12%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSL 88
           G S+ T+Q Y+      L           T + IR+++  E+R++++  ++     + ++
Sbjct: 59  GCSERTIQYYKVTAEHML---------SQTEKEIRKITTDEMRSYLADYQKRNNCSNVTI 109

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
                 I SF  +L++     +S +  +  +K    +   + ++    L D       H 
Sbjct: 110 DNIRRNISSFFTWLEEEDYILKSPMRRIHKIKTKTVVKSVITDEGIEQLRD-------HC 162

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
           T+    R+ A++ LLY  G+R+ E ++L   +I  ++    + GKGDK R V      + 
Sbjct: 163 TQ---IRDLAMIDLLYSTGIRVGELVNLNIGDINFEERECVVYGKGDKERRVYFDAKAKV 219

Query: 209 AILEYY----DLCPFDLNLNIQLPLFR-GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
            ++EY     D  P  L + +  P  R  I G  +        +RQL R LGL      H
Sbjct: 220 HLMEYIESRKDKNPA-LFVTLDAPYDRLKISGVEIR-------LRQLGRELGLE-RIHPH 270

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             R + AT  +  G  +  +Q ILGH ++ TT  Y  VN  N
Sbjct: 271 KFRRTMATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVNQNN 312


>gi|237750921|ref|ZP_04581401.1| site-specific recombinase [Helicobacter bilis ATCC 43879]
 gi|229373366|gb|EEO23757.1| site-specific recombinase [Helicobacter bilis ATCC 43879]
          Length = 374

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 124/272 (45%), Gaps = 45/272 (16%)

Query: 49  FLAFYTEEKITIQTIR--QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK 106
           FL+ YT   +++ TIR  Q + T    FI ++ T       L+   + I +    L KR 
Sbjct: 106 FLSIYTA-NLSLTTIRNYQFALTNFFDFIQRQNT-------LENGAAHIYNMDIVLSKRS 157

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQA---LTLVDNVLLHTSHETKWIDARNSAILYLL 163
           +              S+ LP  L E +    L  + +  +   H    +  RN  I+ ++
Sbjct: 158 V--------------SHDLPEFLTEAELNAFLNALKSYDIKQKHINSVVRLRNQLIILMI 203

Query: 164 YGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD----LC 217
              G R+SE L +  +++    D   LR++GKG+K+RIV +  ++   I EYY+    L 
Sbjct: 204 VYSGARVSEILEIGYKDVSLEGDYYVLRLRGKGNKMRIVFIAKTL---IEEYYNNWVALR 260

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS-----TTAHTLRHSFATH 272
               ++   +PLF  +  K   P   Q YI  +   L L          AH LRHSFAT 
Sbjct: 261 ATFPHVADDMPLF--VNKKFHVPA--QSYIYVVIENLLLSAGIRKAKNGAHLLRHSFATM 316

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           L +   DL  +Q  LGH  + T++IYT+ +++
Sbjct: 317 LYNKSKDLILVQESLGHSSVETSRIYTHFDNQ 348


>gi|227461196|gb|ACP39543.1| putative integron integrase [uncultured microorganism]
          Length = 319

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 88/176 (50%), Gaps = 37/176 (21%)

Query: 163 LYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIR--IVPL--LPSVRKAILEYYDLC 217
           LYG G+R+ E + L  Q+I    +  L  +GKG K R  ++P   +P+++  + +   L 
Sbjct: 144 LYGSGIRLMECVRLRVQDIDFVRREILVRRGKGGKDRRTMLPARAVPALQLHLAQTRMLH 203

Query: 218 PFDLNL---NIQLP--LFRGI---------------RGKPLNP--GV----------FQR 245
             DL +   ++ LP  L R                 R + ++P  GV           QR
Sbjct: 204 ERDLGVGHGSVWLPGALARKYPAAAREWIWQYVFPSRLRSVDPRSGVERRHHVDEKNLQR 263

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            +R   +  G+    T HTLRHS ATHLL +G D+R+IQ +LGH  +STT IYT+V
Sbjct: 264 AVRIAAQAAGIAKHATCHTLRHSLATHLLESGSDIRTIQELLGHADVSTTMIYTHV 319


>gi|261839501|gb|ACX99266.1| phage integrase family protein [Helicobacter pylori 52]
          Length = 355

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 92/194 (47%), Gaps = 14/194 (7%)

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           N    N LP  LN ++    ++ +       +  + ARN  ++ ++   G+R +EAL L 
Sbjct: 157 NQSAGNKLPTHLNNEELEKFLEGI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 214

Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            ++   +    T+ I+GKGDK R V L    + S+ K  L   +L P   +L     LF 
Sbjct: 215 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLMERELYPVKNDL-----LFC 269

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +G  L      + + ++  +  L      AH LRHSFAT L     DL  +Q  LGH 
Sbjct: 270 NQKGSALTQAYLYKQVERIINFADLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 329

Query: 291 RLSTTQIYTNVNSK 304
            L+T++IYT+ + +
Sbjct: 330 SLNTSRIYTHFDKQ 343


>gi|241992502|gb|ACS73585.1| IntI [uncultured bacterium]
          Length = 307

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 82/181 (45%), Gaps = 45/181 (24%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV-----------RKA 209
           LLYG G+R+ E + L  +++   ++ + I+ GKG K R+  +LPS            R+ 
Sbjct: 131 LLYGTGMRLMECVRLRVKDVDFGRNEILIRDGKGGKDRVT-MLPSTVAATLADHLQRRRV 189

Query: 210 ILE-----------------------------YYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I E                              Y  C    + +   P    +R   ++ 
Sbjct: 190 IFEDDLAAGKAEVWLPDALAKKYPGAGTEWAWQYVFCSGSYSTD---PRSGRVRRHHIDE 246

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            + QR +++      L    T HTLRHSFATHLL  G D+R++Q +LGH  +STT IYT+
Sbjct: 247 KLLQRAMKKAVTAARLTKPATPHTLRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYTH 306

Query: 301 V 301
           V
Sbjct: 307 V 307


>gi|89147600|gb|ABD62659.1| integrase [uncultured bacterium]
          Length = 163

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 42/64 (65%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L     QR + +  R  G+  + T HTLRHSFATHLL +G D+R++Q ++GH  + TT I
Sbjct: 99  LGEQAIQRAVHEAVRRSGIEKAATPHTLRHSFATHLLESGHDIRTVQELMGHADVKTTMI 158

Query: 298 YTNV 301
           YT+V
Sbjct: 159 YTHV 162


>gi|227461191|gb|ACP39542.1| putative integron integrase [uncultured microorganism]
          Length = 307

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 80/177 (45%), Gaps = 37/177 (20%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEY------- 213
           LLYG GLR+ E + L  ++I  +Q  L I+ GKG K R+  L   + + + E+       
Sbjct: 131 LLYGSGLRLLECVRLRVKDISFEQHQLTIRDGKGAKDRVTMLPDQLVEPLGEHLQRARRL 190

Query: 214 ---------------------YDLCPFDLNLNIQLPLFR-------GIRGKP-LNPGVFQ 244
                                Y     +       P  R       G+R +  ++    Q
Sbjct: 191 HQDDLERGCGAVYLPTALERKYPNASAEWGWQYVFPAERLSVDPRSGVRRRHHVSESGLQ 250

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + +R+     G+    + HT RHSFATHLL NG D+R++Q +LGH  + TT IYT+V
Sbjct: 251 KAVRRAVLASGVQKPASCHTFRHSFATHLLENGYDIRTVQELLGHADVRTTMIYTHV 307


>gi|218754647|ref|ZP_03533443.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           GM 1503]
 gi|289763070|ref|ZP_06522448.1| integrase/recombinase xerC [Mycobacterium tuberculosis GM 1503]
 gi|289710576|gb|EFD74592.1| integrase/recombinase xerC [Mycobacterium tuberculosis GM 1503]
          Length = 285

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 99/231 (42%), Gaps = 18/231 (7%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           ++  L+ + +R++++          +L R  S +K+F  +  +R +        ++  K 
Sbjct: 44  SLDALTLSVLRSWLAATAGAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKA 103

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
             +LP  L + QAL  +       + +   +  R+  I+ LLY  G+R+SE   L   +I
Sbjct: 104 RRTLPAVLRQDQALRAM-AAAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDI 162

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                 +R+ GKG+K R VP       A+  +  D     +       L  G RG+ L+ 
Sbjct: 163 DTGHRLVRVLGKGNKQRTVPFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLD- 221

Query: 241 GVFQRYIRQLRRYL--------GLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                 +RQ R  +        G P     H LRHS ATHLL  G DLR +
Sbjct: 222 ------VRQARTAVHQTVAAVDGAP-DMGPHGLRHSAATHLLEGGADLRVV 265


>gi|186473704|ref|YP_001861046.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184196036|gb|ACC74000.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 336

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 121/303 (39%), Gaps = 25/303 (8%)

Query: 16  KERQNWLQNLEIERGL-----SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           +E  + LQ   IER +     S  T++SY    R  L +      +     T+ +L  T 
Sbjct: 9   QEFASLLQRFFIERLMQQQNASARTVESYRDTFRMLLTYAQRVLHKPPEKFTLDELDVTL 68

Query: 71  IRAFISKRRTQKIGD-RSLKRSLSGIKSFLKYLKKR---KITTESNILNMRNLKKSNSLP 126
           I AF+    T +    RS    LS I++F  Y+  R    +     IL++   +    L 
Sbjct: 69  ITAFLDHLETARSNSIRSRNARLSAIRTFYHYVTMRCPQALHLAQQILSIPTKRFERPLL 128

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQ 185
             L+ ++      + LL       W   R+  +L LLY  G R+SE   +   ++ +   
Sbjct: 129 GFLSREEV-----HALLGAPDPDTWFGQRDRLLLMLLYNTGARVSELTGMRVADVTLAAT 183

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQ 244
             +R+ GKG K R VPL      AI  +      D  L  +  L     G P+    V +
Sbjct: 184 PWVRLHGKGRKQRAVPLWRETAAAIRTWIR----DQGLQPEQSLLPSRHGGPMTRANVAE 239

Query: 245 RYIRQLRRYLG-----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           R+   L          L    T H++RH+ ATHLL  G  +  +   LGH    TT  Y 
Sbjct: 240 RFSLALMAAAKTCPSLLKRHITPHSMRHTVATHLLQAGVGITEVALWLGHESPLTTHGYV 299

Query: 300 NVN 302
             +
Sbjct: 300 EAD 302


>gi|89147448|gb|ABD62584.1| integrase [uncultured bacterium]
          Length = 163

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 47/76 (61%)

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
           Q P    +R   ++  V Q+ +++     G+    + HTLRHSFATHLL  G D+R++Q 
Sbjct: 87  QDPKLGVVRRHHMSENVVQKAVKKAVEQTGILKRISCHTLRHSFATHLLQRGQDIRTVQE 146

Query: 286 ILGHFRLSTTQIYTNV 301
           +LGH  +STT IYT+V
Sbjct: 147 LLGHSDVSTTMIYTHV 162


>gi|223369816|gb|ACM88777.1| integrase [uncultured bacterium]
          Length = 163

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 50/101 (49%), Gaps = 8/101 (7%)

Query: 209 AILEYYDLCPFDLNLNIQLPLFR--------GIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           AI   Y     D       P +R         IR   +   V  R ++Q  R   +    
Sbjct: 62  AIARKYPRAAHDWGWKFVFPAYRYSADPRTGVIRRHHVYEDVLIRAVKQAARAADINKHV 121

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + HTLRHSFATHLL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 122 SCHTLRHSFATHLLEGGYDIRTVQELLGHADVSTTMIYTHV 162


>gi|213579719|ref|ZP_03361545.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 167

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 68/130 (52%), Gaps = 2/130 (1%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A+L ++YG GLR+SE + L  +++  D   + + GKG K R +P+  +    I  + 
Sbjct: 39  RDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWL 98

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           DL    L  + +  LF    GK ++    Q+   +     GL      H LRHSFATH+L
Sbjct: 99  DLR--GLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHML 156

Query: 275 SNGGDLRSIQ 284
            + GDLR +Q
Sbjct: 157 ESSGDLRGVQ 166


>gi|322420470|ref|YP_004199693.1| integrase family protein [Geobacter sp. M18]
 gi|320126857|gb|ADW14417.1| integrase family protein [Geobacter sp. M18]
          Length = 304

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 97/215 (45%), Gaps = 5/215 (2%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           SL R  + +++F  +  +  +  ++   ++R  +    LP  L   +   L+  +   T 
Sbjct: 83  SLHRMKAAVRAFFAWASEAGVVDDNPARSIRMHRLPRKLPVFLTTAEKKRLLKELKGRTD 142

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
             T     R+ A++ +L G G+R+ E  +L   +I  D   LR++ KG+  ++  +   +
Sbjct: 143 FST----LRDRAMIEVLLGTGIRLGELAALNLDDIDLDAKHLRVRAKGNVPQVKFIKTDL 198

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           R  +  Y           ++        G+     +  R    LR+  G+    T H LR
Sbjct: 199 RTLLRRYLAERRRHSRPEMEALFLSNRDGRLCQRQIANRLAHWLRKA-GIEKELTPHGLR 257

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H+FATHL     DL  +Q  LGH  +STTQIYT++
Sbjct: 258 HTFATHLYCATNDLLVVQRALGHRDVSTTQIYTHL 292


>gi|305432060|ref|ZP_07401227.1| phage integrase family site-specific recombinase [Campylobacter
           coli JV20]
 gi|304445144|gb|EFM37790.1| phage integrase family site-specific recombinase [Campylobacter
           coli JV20]
          Length = 368

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 116/236 (49%), Gaps = 20/236 (8%)

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTE-SNILN--MRNL-----KKSNSLPRALNE 131
           T  + D S K     + +F  +L K+    E ++I N  ++N       K   LP  +NE
Sbjct: 125 TGALSDASKKNYRIAVINFFDFLDKQNEEDEKAHIFNIVLKNWGGITGSKGAKLPEFMNE 184

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLR 189
            +    ++ +    + + K    RN  I+ ++   G+R+SEA+++  ++I ++     +R
Sbjct: 185 DELKKFLEAI---ENSDFKNNTIRNKLIIKIIIFTGIRVSEAINIKLKDISEENELYIIR 241

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIR 248
           I+ KG+K R+V     ++K ++E+  L    +N L+    LF    GK L      R + 
Sbjct: 242 IRAKGNKYRVVM----IKKELIEHL-LKDVRVNYLSEDGLLFVNRNGKALTQAYVSRIVE 296

Query: 249 QLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           Q+    G+      AH LRH+FAT L     DL  +Q  LGH  L+T++IYT+ ++
Sbjct: 297 QILFRAGIRKQKNGAHMLRHTFATLLYKKQKDLVLVQEALGHANLNTSRIYTHFDN 352


>gi|295110002|emb|CBL23955.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 354

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 129/287 (44%), Gaps = 34/287 (11%)

Query: 38  SYECDTRQFLIFL-----AF--YTEEKITIQTIRQL------SYTE-IRAFISKRRTQKI 83
           SY  D R F  FL      F  Y     ++  + Q+       Y E ++ + +  +T+  
Sbjct: 51  SYAYDIRIFFQFLLDENPVFKNYAMTDFSVDVLDQIKAIDLEEYMEYLKVYQNGDKTETN 110

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNV 141
           G+R LKR +S ++SF  Y  KR++   SN   + ++ K    S+ R   ++ AL L  + 
Sbjct: 111 GERGLKRKISALRSFYAYYYKREMI-HSNPTVLIDVPKIHDKSIIRLDTDEVALLL--DY 167

Query: 142 LLH-----TSHETKWID---ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           + H     T  +  + +    R+ AI+ LL G G+R+SE + L  +++    + +++  K
Sbjct: 168 IEHCGDSLTGQKRVYYEKTKERDLAIVTLLLGTGIRVSECVGLDIEDVDFKNNGIKVTRK 227

Query: 194 GDKIRIVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           G    +V     V KA+  Y +    + P       +  LF   + K +     +  +++
Sbjct: 228 GGNEMVVYFGEEVEKALKRYLEVRAGITPL---AGHEHALFYSAQRKRMGVQAVENMVKK 284

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
             R +      T H LR ++ T L    GD+  +  +LGH  ++TT+
Sbjct: 285 YSRQITTTKKITPHKLRSTYGTALYQETGDIYLVADVLGHKDVNTTK 331


>gi|241992604|gb|ACS73657.1| IntI [uncultured bacterium]
          Length = 314

 Score = 65.9 bits (159), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 82/181 (45%), Gaps = 45/181 (24%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV-----------RKA 209
           LLYG G+R+ E + L  +++   ++ + I+ GKG K R+  +LPS            R+ 
Sbjct: 138 LLYGTGMRLMECVRLRVKDVDFGRNEILIRDGKGGKDRVT-MLPSTVAATLADHLQRRRV 196

Query: 210 ILE-----------------------------YYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I E                              Y  C    + +   P    +R   ++ 
Sbjct: 197 IFEDDLAAGKAEVWLPDALAKKYPGAGTEWAWQYVFCSGSYSTD---PRSGRVRRHHIDE 253

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            + QR +++      L    T HTLRHSFATHLL  G D+R++Q +LGH  +STT IYT+
Sbjct: 254 KLLQRAMKKAVTAARLTKPATPHTLRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYTH 313

Query: 301 V 301
           V
Sbjct: 314 V 314


>gi|183981455|ref|YP_001849746.1| site-specific integrase [Mycobacterium marinum M]
 gi|183174781|gb|ACC39891.1| site-specific integrase [Mycobacterium marinum M]
          Length = 359

 Score = 65.9 bits (159), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 105/241 (43%), Gaps = 24/241 (9%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
             R++   + R+ +   R  ++  R  +  L      L +  K K  ++  +      ++
Sbjct: 122 AFREMRDPDARSLVGSSRAARLRSRGERSGL------LAHTAKPKSRSQLRV------RE 169

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              LPR L+ +++  L+ +          W   R+ AI  L+   GLR +E L L   +I
Sbjct: 170 PRWLPRGLSREESAALLGSF-------RSW---RDRAIGGLMLLSGLRSAEVLGLRVSDI 219

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNP 240
              +  +R+ GKG K R VP+   V  AI  Y      + + +    + +G  RG+PL  
Sbjct: 220 DIARRWVRVLGKGGKERSVPIDTDVAGAIQTYLLAERPETDADELFVVAKGAHRGRPLTA 279

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              +   R  R   G+  +   H LRHSF T L   G DL  IQ+++GH  + +   Y +
Sbjct: 280 AGLRTVFRYHRERSGVA-AGHPHALRHSFGTALAEAGVDLSVIQALMGHDHVDSAAAYIH 338

Query: 301 V 301
           +
Sbjct: 339 L 339


>gi|170697418|ref|ZP_02888509.1| integrase family protein [Burkholderia ambifaria IOP40-10]
 gi|170137597|gb|EDT05834.1| integrase family protein [Burkholderia ambifaria IOP40-10]
          Length = 609

 Score = 65.9 bits (159), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 135/328 (41%), Gaps = 65/328 (19%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS---KRRTQKIG 84
           ERG++  +++  +C+   +  FLA  +E        R  +    R F        +Q+  
Sbjct: 271 ERGVALSSMRVEDCEA--YKAFLAAPSERFTGPPGAR--TSGRWRPFAPGGLAPESQRYA 326

Query: 85  DRSLKRSLSGIKSFLKYLKK---RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            R+++ + + + + ++YL     + +T  S +  +R L+   +LP AL  +  +TL +  
Sbjct: 327 IRTIRAAFTWLVA-VRYLAGNPWQAVTDPSVVRRVRKLQVERALPLALWTRVRVTLAERG 385

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----MDDQST----LRIQGK 193
            L +    +W  AR  A+L ++   GLRI+EA +     +     DD +     L + GK
Sbjct: 386 ELQSPSGPRWRAAR--ALLLIMGDGGLRIAEAAAAERATLHWLPADDDAPASWLLEVIGK 443

Query: 194 GDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLF----------------RG 232
           G+K R VP+      A+  ++     D    D    +  PL                   
Sbjct: 444 GNKQRFVPISDECVDALRAHWRDRALDFDAADSAGPLVAPLILPPTPRAREKFGVEVDAN 503

Query: 233 IRGKPLNPGVF---------QRYIRQL-----------RRYLGLPLSTTAHTLRHSFATH 272
             GKP  PG +         Q  I QL           RR L    ST+ H  RH+  T 
Sbjct: 504 TEGKPTKPGGYSVRGARGLTQWAIAQLLDVMPDLSEAERRKLA---STSPHAFRHTVGTQ 560

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +L+ G  L  +Q  LGH  L TT IY +
Sbjct: 561 MLAAGVALEVVQRTLGHASLGTTSIYVS 588


>gi|44004569|ref|NP_982238.1| integrase/recombinase, putative [Bacillus cereus ATCC 10987]
 gi|208702025|ref|YP_002267328.1| integrase/recombinase, putative [Bacillus cereus H3081.97]
 gi|217956830|ref|YP_002335924.1| integrase/recombinase, putative [Bacillus cereus AH187]
 gi|42741635|gb|AAS45080.1| integrase/recombinase, putative [Bacillus cereus ATCC 10987]
 gi|208657880|gb|ACI30250.1| integrase/recombinase, putative [Bacillus cereus H3081.97]
 gi|217068527|gb|ACJ82775.1| putative integrase/recombinase [Bacillus cereus AH187]
          Length = 347

 Score = 65.9 bits (159), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 124/287 (43%), Gaps = 41/287 (14%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T Q Y  D   FL ++      K TI TI++LS+ ++  +  +  ++K    +L+R 
Sbjct: 62  SERTKQQYLHDLSHFLRYI------KETIGTIQELSHNDMEIYFYQL-SKKYAATTLRRK 114

Query: 92  LSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
            + ++ FLKY+      ++  S+ L   ++KK   + R L  ++      N +L T  +T
Sbjct: 115 KTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLFPEEV-----NEILDTLKKT 169

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPS 205
            +      ++ +LL   GLRI E  +    ++    S     LR+ GKG+K R V +   
Sbjct: 170 NFF---MYSLFFLLTTTGLRIEEVANAKWADLAFHPSLNVYLLRVVGKGNKTREVRIFED 226

Query: 206 VRKAILEYYDLCPF--------DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           V        DLC          +L+ +          G         +Y+ +      LP
Sbjct: 227 VLN------DLCRLRQLRKQTSELDASSSSAFLPKADGSHYRADYLSKYVAEKIEETNLP 280

Query: 258 L------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                    T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y
Sbjct: 281 FLRYRKDRITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERY 327


>gi|300112795|ref|YP_003759370.1| integron integrase [Nitrosococcus watsonii C-113]
 gi|299538732|gb|ADJ27049.1| integron integrase [Nitrosococcus watsonii C-113]
          Length = 327

 Score = 65.9 bits (159), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 89/197 (45%), Gaps = 45/197 (22%)

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQGKGDKIRIVPLLPS 205
           + KW+ A       LLYG GLR+ E + L  ++      Q T+R  GKG K  +  L   
Sbjct: 127 QGKWVMAS------LLYGSGLRLMECMRLRVEDADFHYHQITVR-DGKGRKDWVTVLPKK 179

Query: 206 VRKAI---------LEYYDL---C-----PFDL-------NLNIQLPLFRGIRGKPLNP- 240
           + K +         L   DL   C     P+ L       N     P       + ++P 
Sbjct: 180 LFKPLQVQLKTVKALHQQDLREGCGAVYLPYALEKKYPNANREFGWPYVFPACKRAIDPS 239

Query: 241 -GVFQRY----------IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
            GV +R+          ++   R  G+    + HT RHSFATHLL NG D+R+IQ +LGH
Sbjct: 240 SGVVRRHHLSETALQQAVKNAIRKAGINKPGSCHTFRHSFATHLLENGYDIRTIQELLGH 299

Query: 290 FRLSTTQIYTNVNSKNG 306
             ++TT IYT+V  + G
Sbjct: 300 KDVNTTMIYTHVLERGG 316


>gi|299144869|ref|ZP_07037937.1| integrase/recombinase, phage integrase family [Bacteroides sp.
           3_1_23]
 gi|298515360|gb|EFI39241.1| integrase/recombinase, phage integrase family [Bacteroides sp.
           3_1_23]
          Length = 330

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 125/283 (44%), Gaps = 36/283 (12%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS----KRRTQKIGD 85
           G S+ TL  Y     + L+ L+           I  ++ ++IRA++S    + ++ K+  
Sbjct: 67  GCSEKTLAYYRNTIERLLLTLSI---------AICHITTSDIRAYLSDYQEEHQSSKVTM 117

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            +++R  S   SF  +L+      +S +  +  +K  + +   L+++Q   L D+     
Sbjct: 118 DNMRRIFS---SFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQLRDSC---- 170

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
                  + R+ A++ +L   G+R+ E + L  ++I   +    + GKG+K RIV     
Sbjct: 171 ------TNKRDLALIDILSSTGIRVGELVKLNREDIDFHERQCVVFGKGNKERIVYFNAR 224

Query: 206 VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            +  + +Y D    D   L +++ LP  R      L     +  IR L + L +P     
Sbjct: 225 TKLHLQQYLDERTDDNPALFVSLHLPHTR------LTISGVEVRIRDLGKSLSMP-KVHP 277

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           H  R + AT  +  G  +  +Q +LGH R+ TT  Y  VN  N
Sbjct: 278 HKFRRTLATMAIDKGMPIEQVQRLLGHVRIDTTLHYAIVNQNN 320


>gi|41408850|ref|NP_961686.1| hypothetical protein MAP2752 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41397209|gb|AAS05069.1| hypothetical protein MAP_2752 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 381

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 128/303 (42%), Gaps = 51/303 (16%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
             LP +  +E+      W++     RGLS  T+       R+          E++T +  
Sbjct: 18  GELPPLQRYEI------WMKG----RGLSARTITDSMLTLRRL---------ERVTRRPA 58

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKKS 122
             ++   I  F++    + +G RS       +  F ++L         NI+  +   +  
Sbjct: 59  HAVAALAISRFLAD---EALGPRSRYTYHVQLAGFFRWLANED--GAPNIMAQIPRPRLP 113

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            S+PR +   Q   L+  V +H          R   ++ L    GLR  E   +  Q++ 
Sbjct: 114 RSVPRPITTGQLQALL-AVRMHK---------RTRVMILLAAFAGLRAHEIAKVRGQDVD 163

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP---FDLNLNIQLPLFRGIRGKP-L 238
            D  TL + GKG     +PL P     ++E  +  P   +    N + P      G+  L
Sbjct: 164 PDARTLHVVGKGGHAATIPLHP----VLVEAAETMPRHGWWFPANSRRP------GQHVL 213

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           + GV       +RR  G+P   TAH LRH + T L+++G DLR+ Q++L H  L++T IY
Sbjct: 214 SRGVVDAIGDAMRRA-GIP-GGTAHRLRHWYGTTLVASGTDLRTAQTLLRHSNLASTAIY 271

Query: 299 TNV 301
           T V
Sbjct: 272 TEV 274


>gi|89147675|gb|ABD62696.1| integrase [uncultured bacterium]
 gi|89147677|gb|ABD62697.1| integrase [uncultured bacterium]
          Length = 163

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 43/64 (67%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           ++  + Q  +++     G+    T HTLRHSFATHLL NG D+R++Q +LGH  ++TT I
Sbjct: 99  VDESMLQAAVKRAVAEAGIAKPATCHTLRHSFATHLLENGYDIRTVQELLGHKEVATTMI 158

Query: 298 YTNV 301
           YT+V
Sbjct: 159 YTHV 162


>gi|311694590|gb|ADP97463.1| resolvase [marine bacterium HP15]
          Length = 198

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 93/201 (46%), Gaps = 28/201 (13%)

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           +++P+ L + + LTL++    H  H           IL L++  G R+SE L++TP + +
Sbjct: 7   DTMPKYLLKPEVLTLLE-AETHPMHRL---------ILDLMWCIGARVSEVLTITPASFI 56

Query: 183 DDQSTLRI------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--- 233
           DD     +      QG G      P   S++++   +  +   D    IQ  L+ G    
Sbjct: 57  DDGYDFGVVLKTIKQGAGR-----PSKRSLQRSPKRFIPILDRDFQTRIQSYLWMGKFRQ 111

Query: 234 --RGKPLNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
             R  P+        I +L   +G   P     HT RHSFA HLL  G  L+ +  +LGH
Sbjct: 112 DERIFPITRQAVSANIDRLIDQVGGEPPFKIGCHTFRHSFAVHLLLYGRPLKFVSQLLGH 171

Query: 290 FRLSTTQIYTNVNSKNGGDWM 310
             + +T++YTNV + +G  ++
Sbjct: 172 RSVESTEVYTNVLAFDGAHFL 192


>gi|296163757|ref|ZP_06846462.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295885996|gb|EFG65909.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 334

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 127/312 (40%), Gaps = 57/312 (18%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS---K 77
           +L++L   R +S  TL SY    R  L F+      +    ++  LS   I AF+    K
Sbjct: 16  FLKHLMTHRNVSPQTLWSYRDAFRLLLQFIDTTMHIEPVALSLTHLSPAVILAFLDSLEK 75

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRK---ITTESNILNMRNLKKSNSLPRALNEKQA 134
            R   +  R+ +  L+ ++SF +++   +       ++IL +   +    L  AL+  + 
Sbjct: 76  ERNNAVRSRNAR--LAAVRSFFRWVAISRPDFAGLSTSILAIPTKRTDRRLICALSRPE- 132

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQG 192
              +D +L      T     R+ A+L  +Y  G R+SE  S+    +      S + + G
Sbjct: 133 ---IDAILGAPDLSTP-CGRRDHAMLLTMYNTGARVSEITSMACSQVELGGHSSFVHLHG 188

Query: 193 KGDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLN---------- 239
           KG K R VPL  +   A+ ++    +  P  L       LF   RG+ L           
Sbjct: 189 KGRKERCVPLWAATADALTKWMREQNAVPTSL-------LFTNYRGEQLTRNGVDCILKK 241

Query: 240 ---------PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
                    P + +++I             + H +RH+ ATHLL  G D+  I   LGH 
Sbjct: 242 AIAGGVNSCPSLSKKHI-------------SPHVVRHATATHLLQAGVDISVIALWLGHE 288

Query: 291 RLSTTQIYTNVN 302
            + TT IY   N
Sbjct: 289 SIDTTHIYMESN 300


>gi|227461207|gb|ACP39548.1| putative integron integrase [uncultured microorganism]
          Length = 307

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 80/177 (45%), Gaps = 37/177 (20%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEY------- 213
           LLYG GLR+ E + L  ++I  +Q  L I+ GKG K R+  L   + + + E+       
Sbjct: 131 LLYGSGLRLLECVRLRVKDISFEQHQLTIRDGKGAKDRVTMLPDQLVEPLGEHLQRARRL 190

Query: 214 ---------------------YDLCPFDLNLNIQLPLFR-------GIRGKP-LNPGVFQ 244
                                Y     +       P  R       G+R +  ++    Q
Sbjct: 191 HQDDLERGCGAVYLPTALERKYPNASAEWGWQYVFPAERLSVDPRSGVRRRHHVSESGLQ 250

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + +R+     G+    + HT RHSFATHLL NG D+R++Q +LGH  + TT IYT+V
Sbjct: 251 KAVRRAVLASGVQKPASCHTFRHSFATHLLENGYDIRTVQELLGHADVRTTMIYTHV 307


>gi|326943717|gb|AEA19610.1| Integrase [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 368

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 136/334 (40%), Gaps = 51/334 (15%)

Query: 16  KERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL-----AFYTEEKIT--------I 60
           KE+  W  ++ +E +  LS  TL  Y  +   FL +L      F   E +T        I
Sbjct: 17  KEKMPWYIIEYIEEKTNLSPATLYGYLIEYEMFLHWLISSRLVFVNGEVVTVTKLHEVPI 76

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           +T+  L   +++ F S    Q    +++ R+ S +KS   YL K            RN+ 
Sbjct: 77  ETLEHLPLKQVKRFKSYLERQGNKTKAIIRTFSALKSLFNYLTKNTEDDNGECYFYRNVM 136

Query: 121 KSNSLPRA-LNEKQALTLVDNVLLHTSHETKWID-------------------------A 154
               + +  ++       +  V+ H + + K++                           
Sbjct: 137 AKMEIHKEKIDASARAKEISEVIFHNNDDIKFMRFLSNEYEQMLKENAPGKLRFFKRDRE 196

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AIL L+ G GLR+SE  SLT  +I      +++  KGDK   +    +    + EY 
Sbjct: 197 RDIAILSLILGTGLRVSETASLTISSINFRTRYIKVVRKGDKKSSILATQTALDDVQEYL 256

Query: 215 DL------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            +      CP D    + +  ++G   + ++    Q+   +  R        + H LRH+
Sbjct: 257 KVRAARYKCP-DAEDILFVTNYKGSYAQ-ISVNAIQKLTEKYTR--AFDEKKSPHKLRHT 312

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +AT+  +   DL  + + +GH  + TT +YTN++
Sbjct: 313 YATNHYNENKDLVLLANQMGHNSMETTSLYTNID 346


>gi|228969855|ref|ZP_04130590.1| Integrase [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228789860|gb|EEM37707.1| Integrase [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 375

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 138/332 (41%), Gaps = 49/332 (14%)

Query: 16  KERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL-----AFYTEEKIT------IQT 62
           KE+  W  ++ +E +  LS  TL  Y  +   FL +L     A    E +T      I+T
Sbjct: 24  KEKMPWYIIEYIEEKTNLSPATLYGYLIEYEMFLQWLISSRLATTDGEVVTKIHEVPIET 83

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +  L   +++ F S    Q    +++ R+ S +KS   YL              RN+   
Sbjct: 84  LEHLPLKQVKRFKSYLERQGNKTKAVIRTFSALKSLFNYLTSNTEDDNGECYFYRNVMAK 143

Query: 123 NSLPRA-LNEKQALTLVDNVLLHTSHETKWID-------------------------ARN 156
             + +  ++       +  V+ H + + K++                           R+
Sbjct: 144 MEIHKEKIDAAARAKEISEVIFHNNDDIKFMRFLSNEYEQMLQETAPGKLRFFKRDRERD 203

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
            AIL L+ G GLR+SEA SLT  +I      +++  KGDK   +    +    + EY  +
Sbjct: 204 IAILSLILGTGLRVSEAASLTISSINFRTRYIKVIRKGDKKSSILATQTALDDVQEYLKV 263

Query: 217 ------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
                 CP D ++ + +  ++G   + ++    Q+   +  R        + H LRH++A
Sbjct: 264 RANRYKCPNDEDI-LFVTNYKGSYAQ-ISVNAIQKLTEKYTR--AFDEKKSPHKLRHTYA 319

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           T+  +   DL  + + +GH  + TT +YTN++
Sbjct: 320 TNHYNENKDLVLLANQMGHNSMETTSLYTNID 351


>gi|167628714|ref|YP_001679213.1| phage recombinase [Heliobacterium modesticaldum Ice1]
 gi|167591454|gb|ABZ83202.1| phage recombinase [Heliobacterium modesticaldum Ice1]
          Length = 349

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 136/307 (44%), Gaps = 35/307 (11%)

Query: 29  RGLSKLTLQSYECDTR---QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           +G S+ T+ SY+   +    FL+       EKIT +++     ++   ++   R      
Sbjct: 22  KGYSQNTITSYQYAFQLLYDFLLEEKGLPPEKITFKSLSSEIISKYLTWLEVNRGCSPAT 81

Query: 86  RSLKRSLSGIKSFLKYLKKRKITT----ESNILNM--RNLKKSNSLPRALNEKQALTLVD 139
           R+L+R+   I SF K+  K+ +       S++  +  +N  K+  +     E+ A     
Sbjct: 82  RNLRRT--AISSFSKFALKKNLGEALQFHSSVAEIPPKNTHKNTDIKYFTKEEIA----- 134

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIR 198
            ++L+     + I  R+  +L LLY  G R  E   LT  +I +  ++ +R+ GKG+K R
Sbjct: 135 -IILNMPDTGRAIGKRDVMLLSLLYASGARAQELCDLTLNDIYLGKETNIRLVGKGNKAR 193

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP------LFRGIRGKPLNPGVFQRYIRQ--L 250
           +V +  +    +  Y +      NL+   P      +F     + ++    +  +++  +
Sbjct: 194 LVTIPQNCAVMLKNYLE----SRNLDSSSPKDRLKHIFSSQTNEKMSISCVEEIVKKYVI 249

Query: 251 RRYLGLPL-----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +     P      + T H+ RHS A H+L  G  L  I++ LGH  + TT IY NV  + 
Sbjct: 250 KSKKAYPQLFKRKTYTPHSFRHSIAVHMLECGESLVVIKAFLGHTSIMTTTIYANVTPEL 309

Query: 306 GGDWMME 312
              ++ E
Sbjct: 310 ANKYLRE 316


>gi|89147371|gb|ABD62546.1| integrase [uncultured bacterium]
          Length = 163

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           P    +R   L+    Q+ +++      +P   T HT RHSFATHLL +G D+R++Q +L
Sbjct: 89  PRSGAVRRHHLDESGLQKAVKRAAELAQIPKRVTCHTFRHSFATHLLEDGYDIRTVQELL 148

Query: 288 GHFRLSTTQIYTNV 301
           GH  +STT IYT+V
Sbjct: 149 GHRDVSTTMIYTHV 162


>gi|223369832|gb|ACM88785.1| integrase [uncultured bacterium]
          Length = 163

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 45/69 (65%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R    +  + QR +++  R  G+    + HTLRHSFATHLL +G D+R+IQ +LGH  +
Sbjct: 94  VRRHHASEDMLQRSVKKAIREAGISKHASCHTLRHSFATHLLEDGYDIRTIQELLGHADV 153

Query: 293 STTQIYTNV 301
            TT IYT+V
Sbjct: 154 QTTMIYTHV 162


>gi|94264575|ref|ZP_01288360.1| Phage integrase:Phage integrase, N-terminal SAM-like [delta
           proteobacterium MLMS-1]
 gi|93454993|gb|EAT05227.1| Phage integrase:Phage integrase, N-terminal SAM-like [delta
           proteobacterium MLMS-1]
          Length = 420

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 128/272 (47%), Gaps = 34/272 (12%)

Query: 45  QFLIFLAFYTEEKITIQTIRQLSYTEIRAFI--SKRRTQKIGDRSLKRSLSGIKSFLKYL 102
           QFL +L      + T + ++QL+   +  F     R     G RS++   S +++F ++ 
Sbjct: 153 QFLQWLG----PQATPEGLQQLTSEAVEEFFLSYSRSMGHAGRRSMQ---SALRTFFRFC 205

Query: 103 KKRKITT---ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
             +  T    +  +  +R  K + ++PR L ++QA  ++D +  +++        R+ AI
Sbjct: 206 LHQGYTQKQLDRAVPTLRTYKLA-TVPRGLTDEQARKVLDGISRNSN-----AGQRDYAI 259

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG---DKIRIVPLLPSVRKAILEYYD- 215
             LLY  G+R  +  +L  ++I  D +  RI  K     K  ++PL   V +++L Y   
Sbjct: 260 CQLLYTYGVRGGQVRALCLEDI--DWTNDRILFKALKHGKDSLLPLTVEVGQSLLSYLQN 317

Query: 216 ---LCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFA 270
               C + ++ L ++ P +R +        +  R+IR      G+   +  AH  RH FA
Sbjct: 318 ARPPCRYSEVFLTVRAP-YRPLPNSSTLAVIVDRHIRAA----GIDSHAKGAHVFRHGFA 372

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           T +L  G  L+ +  +LGH  L+TT IY  V+
Sbjct: 373 TRMLQEGHSLKKVADVLGHRHLATTFIYAKVD 404


>gi|89147657|gb|ABD62687.1| integrase [uncultured bacterium]
          Length = 163

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 43/64 (67%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           ++  V Q+ ++Q     G+    T HT RHSFATHLL +G D+R++Q +LGH  ++TT I
Sbjct: 99  VHESVLQKVVKQAVHKAGVSKPATPHTFRHSFATHLLEDGYDIRTVQELLGHSDVTTTMI 158

Query: 298 YTNV 301
           YT+V
Sbjct: 159 YTHV 162


>gi|330822390|ref|YP_004362611.1| Phage integrase family protein [Burkholderia gladioli BSR3]
 gi|327374227|gb|AEA65581.1| Phage integrase family protein [Burkholderia gladioli BSR3]
          Length = 770

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 81/178 (45%), Gaps = 34/178 (19%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI--------MDDQSTLRIQGKGDKIRIVP----- 201
           R++ +L L Y  G+R +E  + T  ++        ++D   LR+ GKG + R VP     
Sbjct: 467 RDAFVLLLAYATGMRRAELAAATTGDLSRKALDGALEDAYVLRVDGKGRRRREVPMPARL 526

Query: 202 --LLPSVRKAILEYYDL--CPFDLNLNIQLPLFRGIRGKPLNP--------GVFQRYIRQ 249
             LL +  +A  E   L   P D  L   L     + G  L+P        G+F R   +
Sbjct: 527 MDLLRAELRARAEPLSLETAPADTPLVAHL-----VTGAALHPNTIGALFKGIFARAAER 581

Query: 250 LR-RYLGLPLS---TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           L   Y G        + H LRH+FA H L  G D+R +QS+LGH  L+TT  Y   ++
Sbjct: 582 LAPSYPGAAADLQRASTHWLRHTFANHGLDAGADIRDMQSLLGHASLATTTHYAKGDA 639


>gi|317013308|gb|ADU83916.1| integrase/recombinase (xerD) [Helicobacter pylori Lithuania75]
          Length = 355

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 130/276 (47%), Gaps = 29/276 (10%)

Query: 48  IFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKR 105
           +FL F Y ++ + +++ R LS  ++  F+ +   Q     S+ + +  ++ F  YL +KR
Sbjct: 77  LFLFFNYFKDNLKLRSFRMLSEEQVINFLFEL-AQNRKPSSMAKYVMYLRQFFDYLDRKR 135

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
           + + +  + N+   K   SLPR LN+K   + +  +L +    +   + RN  IL ++  
Sbjct: 136 RYSFDFTLKNLAFAKTKESLPRHLNDKDLKSFLKTLLDYKPATS--FEKRNKCILLIVIL 193

Query: 166 CGLRISEALSLTPQNIMDDQS--TLRIQGKGDK-----IRIVPLLPSVRKAILEYYDLCP 218
            GLR  E L++  ++I  ++   ++ IQGKG K     I+   L PS+   + + Y L  
Sbjct: 194 GGLRKYEVLNIELKHIQVEEQNYSILIQGKGRKERKAYIKKSLLEPSLNAWLSDEYRLKY 253

Query: 219 FDLNLNIQLPLFRGIRGKPLN--------PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           F+        LF+  + K  N        P +F+  + Q++ Y      T  H  RHSFA
Sbjct: 254 FN-----GAYLFKKDKQKAQNSLTLYNFIPLIFK--LAQIKHYK--QYGTGLHLFRHSFA 304

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           T +     DL      LGH  L +T+IY +   ++ 
Sbjct: 305 TLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHN 340


>gi|89147365|gb|ABD62543.1| integrase [uncultured bacterium]
          Length = 163

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 43/64 (67%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           ++  V QR ++   R   +    + HTLRHSFATHLL +G D+R++Q +LGH  +STT I
Sbjct: 99  ISESVLQRVVKGAVRRANIAKPASCHTLRHSFATHLLEDGYDIRTVQELLGHKDVSTTMI 158

Query: 298 YTNV 301
           YT+V
Sbjct: 159 YTHV 162


>gi|268609386|ref|ZP_06143113.1| putative integrase [Ruminococcus flavefaciens FD-1]
          Length = 328

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 116/249 (46%), Gaps = 25/249 (10%)

Query: 63  IRQLSYTEIRAFI----SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
           I+ ++  ++RA++    +++++ K+   +++R LS   SF  +L+      +S +  + N
Sbjct: 89  IKHITTDDLRAYLTDYQAEKKSSKVTMDNIRRILS---SFFSWLEDEDYIIKSPVRRIHN 145

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           +K S ++     ++    + DN           ++ R+ A++ +L   G+R+ E + L  
Sbjct: 146 VKTSKTIKETYTDENLELMRDNC----------VELRDLAMIDMLASTGMRVGEMVLLNR 195

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG--K 236
            +I  ++    + GKGDK R+V    +  K  L+ Y     D +      LF  +R   K
Sbjct: 196 SDIDFNERECVVVGKGDKERMV-YFDARTKLHLQSYLASRTDSD----SALFVSLRSPHK 250

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L  G  +  +R++ R LG+      H  R + AT  +  G  +  +Q +LGH R+ TT 
Sbjct: 251 RLTIGAIELRLREMGRKLGIS-KVHPHKFRRTLATMAIDKGMPIEQLQRLLGHQRIDTTL 309

Query: 297 IYTNVNSKN 305
            Y  V   N
Sbjct: 310 QYAMVKQSN 318


>gi|89147661|gb|ABD62689.1| integrase [uncultured bacterium]
          Length = 163

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 42/63 (66%)

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +  V Q  +++  R  G+  + T HT RHSFATHLL N  D+R++Q +LGH  +STT IY
Sbjct: 100 DESVLQTAVKKAVRAAGITKAATCHTFRHSFATHLLENDYDIRTVQELLGHKDVSTTMIY 159

Query: 299 TNV 301
           T+V
Sbjct: 160 THV 162


>gi|223369850|gb|ACM88794.1| integrase [uncultured bacterium]
          Length = 163

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 41/64 (64%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+    QR +R+     G+    T HT RHSFATHLL  G D+R++Q +LGH  L+TT I
Sbjct: 99  LHETAVQRAVREAVLRSGVAKRATCHTFRHSFATHLLEQGSDIRTVQELLGHSDLATTMI 158

Query: 298 YTNV 301
           YT+V
Sbjct: 159 YTHV 162


>gi|89147584|gb|ABD62651.1| integrase [uncultured bacterium]
          Length = 163

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 40/59 (67%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            Q  +++  R   L    T HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 104 LQLAVKKAVRAASLTKPATCHTLRHSFATHLLENGSDIRTVQELLGHKDVSTTMIYTHV 162


>gi|188026430|ref|ZP_02997899.1| hypothetical protein PROSTU_04138 [Providencia stuartii ATCC 25827]
 gi|291326773|ref|ZP_06125806.2| glutamine amidotransferase, class I [Providencia rettgeri DSM 1131]
 gi|188019829|gb|EDU57869.1| hypothetical protein PROSTU_04138 [Providencia stuartii ATCC 25827]
 gi|291312882|gb|EFE53335.1| glutamine amidotransferase, class I [Providencia rettgeri DSM 1131]
          Length = 337

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 130/312 (41%), Gaps = 31/312 (9%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           ++ PEIV       +Q + + L  +R LS  T+  Y    + FL F       +     +
Sbjct: 10  SSFPEIV-------QQFFTEYLVAQRALSPQTIACYRDALKLFLEFATSQLHRQPVAMKL 62

Query: 64  RQLSYTEIRAFISK---RRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT---TESNILNMR 117
             ++   I  F+      R   +  R+L+  L+ +++FL++  +R IT   T    LN+ 
Sbjct: 63  EDITPDLILKFLDNLELERQNTVRSRNLR--LTALRTFLRFAGRRDITALHTVERALNVP 120

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             +    L   L   + + ++       +    W   R+  +  ++Y  G R+SE +++ 
Sbjct: 121 MKRFDQPLIGHLTRPEIIAILG------APGDDWTSQRDHLLFTIIYNTGARVSEVINIR 174

Query: 178 PQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
             ++ +D  + + + GKG + R +PL  S    I  +      + N++    L     G+
Sbjct: 175 VVDVVLDGSACVHLNGKGRRKRSIPLWKSTVGIIRAWLRT---NQNMHGDAALLPARSGQ 231

Query: 237 PLN-PGVFQRYIRQLRRYLGLPLS-----TTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
           P+    V QR    + R      S      + H LRH+ A HLL +G     I   LGH 
Sbjct: 232 PMTRANVAQRLALAVNRAAATQPSLKTKRVSPHVLRHTTAMHLLQSGVSFNLIALWLGHE 291

Query: 291 RLSTTQIYTNVN 302
            ++TT  Y   N
Sbjct: 292 SVNTTHRYVEAN 303


>gi|89147644|gb|ABD62681.1| integrase [uncultured bacterium]
          Length = 163

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 42/69 (60%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           IR   +     QR ++Q  R   L    T HT RHSFATHLL  G D+R++Q +LGH  +
Sbjct: 94  IRRHHVQDQAVQRAVKQAARDADLNKPATPHTFRHSFATHLLEGGYDIRTVQELLGHSDV 153

Query: 293 STTQIYTNV 301
           STT IYT+V
Sbjct: 154 STTMIYTHV 162


>gi|228924908|ref|ZP_04088061.1| Integrase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228834752|gb|EEM80238.1| Integrase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 371

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 139/332 (41%), Gaps = 49/332 (14%)

Query: 16  KERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL----------AFYTE-EKITIQT 62
           KE+  W  ++ +E +  LS  TL  Y  +   FL +L             TE  ++TI+T
Sbjct: 24  KEKMPWYIIEYIEEKTNLSPATLYGYLIEYEMFLQWLITSRLATVDGKVVTEIHEVTIET 83

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +  L   +++ F S    Q    +++ R+ S +KS   YL              RN+   
Sbjct: 84  LEHLPLKQVKRFKSYLERQGNKTKAVIRTFSALKSLFNYLTSNTEDDNGECYFYRNVMAK 143

Query: 123 NSLPRA-LNEKQALTLVDNVLLHTSHETKWID-------------------------ARN 156
             + +  ++       +  V+ H + + K++                           R+
Sbjct: 144 MEIHKEKIDAAARAKEISEVIFHNNDDIKFMRFLSIEYEKMLQETAPGKLRFFKRDRERD 203

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
            AIL L+ G GLR+SEA SLT  +I      +++  KGDK   +    +    + EY  +
Sbjct: 204 IAILSLILGTGLRVSEAASLTISSINFRTRYIKVVRKGDKKSSILATQTALDDVQEYLKV 263

Query: 217 ------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
                 CP + ++ + +  ++G   + ++    Q+   +  +        + H LRH++A
Sbjct: 264 RAVRYKCPDNEDI-LFVTNYKGSYAQ-ISVNAIQKLTEKYTK--AFDEKKSPHKLRHTYA 319

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           T+  +   DL  + + +GH  + TT +YTN++
Sbjct: 320 TNHYNENKDLVLLANQMGHNSMETTSLYTNID 351


>gi|254885280|ref|ZP_05257990.1| phage integrase [Bacteroides sp. 4_3_47FAA]
 gi|254838073|gb|EET18382.1| phage integrase [Bacteroides sp. 4_3_47FAA]
          Length = 534

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 78/155 (50%), Gaps = 14/155 (9%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEY 213
           RN  ++ LL   GLR SE  +L   +I   +  + IQ  KG K +  PLL SV +AI+EY
Sbjct: 371 RNYTVVLLLATYGLRCSEVANLKISDIDWRKEQIHIQHAKGGKSQTFPLLHSVGEAIIEY 430

Query: 214 Y------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                  DL    L    + P FR I    ++  V +       ++ G       H+LRH
Sbjct: 431 LRFERRNDLYNDSLFFCAKAP-FRTITCHAIHDIVRKELHDVSIKHKG------PHSLRH 483

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           S+AT L++NG  ++ +  +LGH  + +T+IY  V+
Sbjct: 484 SYATFLINNGQTMKEVGDLLGHKSIDSTRIYAKVD 518


>gi|187934545|ref|YP_001886950.1| phage integrase [Clostridium botulinum B str. Eklund 17B]
 gi|187722698|gb|ACD23919.1| phage integrase [Clostridium botulinum B str. Eklund 17B]
          Length = 335

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 7/163 (4%)

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
           L  + ETK    R  A+  LL     RISE  ++  Q+I  ++ ++++ GKG K RIV  
Sbjct: 170 LREACETK----REKALFELLDSTACRISEIQNIKLQDINWNEKSIKVTGKGSKERIVYF 225

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
               + A+  Y      D   N  L + +    + L     Q+ I++++   G+      
Sbjct: 226 STRAKLALENYLKSRNDD---NNSLFISKKFHNRTLGVRSLQKTIKKIKERSGVTERVHT 282

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           H  R + AT LL+ G  +  +Q ILGH   +TTQIY  ++ +N
Sbjct: 283 HKFRRTQATRLLNQGMRIEGVQGILGHTTPTTTQIYAQLSQEN 325


>gi|295399108|ref|ZP_06809090.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978574|gb|EFG54170.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
          Length = 324

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 128/290 (44%), Gaps = 32/290 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFL--AFYTEEKITIQT--IRQL--------SYTEIRAFIS 76
           + LS  TL SYE   + F+ +L      EE   ++T  IRQ          YT +    S
Sbjct: 20  KNLSPKTLSSYEQSLKLFIAYLKNEHGIEEVDAVRTGHIRQYIAYLQERGKYTVVNREAS 79

Query: 77  K-------RR--TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
           +       RR   +KI + ++   +  IK F  +L +     ++ +  ++ +K       
Sbjct: 80  RLINRPENRRDYNKKISNVTINNYIRNIKVFFNWLHEEGEIHKNPVDKIKQIKTERKQKA 139

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQS 186
            +++++      N+LL     T +   RN  I  LL   G+RI E L+LT  +I    + 
Sbjct: 140 GISQEEF-----NLLLSQFDYTTFHGYRNKVITMLLQDTGMRIGECLALTVDDIDFKHRM 194

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            L  + KG K R V     + + +  Y      D   + +L LF   R  PL    F++ 
Sbjct: 195 ILVKKTKGRKERYVYFSQVMARELKHYIRFK--DRYTDTEL-LFPTTRNTPLTVHSFEKQ 251

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           ++Q    +GL  S   H +R++FA   L NGGDL ++  ILGH  +  T+
Sbjct: 252 LKQAGERIGL--SIHPHQIRNNFARQYLLNGGDLYTLSRILGHSSVKVTE 299


>gi|228989062|ref|ZP_04149089.1| Integrase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228770690|gb|EEM19228.1| Integrase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 380

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 144/344 (41%), Gaps = 58/344 (16%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIF-----LAFYTEEKI 58
           NN+P  V           ++ LE++  LS  TL +Y  +  +F  +     LA      +
Sbjct: 37  NNMPWYV-----------IEYLEMKTALSPATLYAYITEFEKFFKWIILKRLAVVNGNVV 85

Query: 59  T------IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
           T      I+T++ L   ++  F    + + I  R++ R+ S +KS  KYL +        
Sbjct: 86  TNITDIPIETLQTLPLNDVNRFHMYLQGEGIETRAINRTFSALKSLFKYLAQNSEDEHGK 145

Query: 113 ILNMRNLKKSNSLPRALNEKQA-LTLVDNVLLHTSHETKWI------------------- 152
               RN+ +   L +   +  A    V N++ + + +  ++                   
Sbjct: 146 SYLSRNVMEKIELHKEKVDAAARADEVANIIFNDNEDVAFLRFLINDYATILKETSTRKY 205

Query: 153 ------DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                   R+ A++ L+ G GLR+SE  SLT  +I   Q T+++  KG+K   +    S 
Sbjct: 206 NYFLRDKERDIALISLILGTGLRVSELASLTLSSINFRQGTIKVTRKGNKKSSILATKSC 265

Query: 207 RKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
              + EY        +CP + ++ + +  ++G +   L+    Q  + +           
Sbjct: 266 LDDVQEYMKVRLEKYMCPPEEDI-LFVTRYQG-KYTQLSVRAIQNLVEKYSS--AFDEKR 321

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + H LRH++AT+      DL  ++  LGH  +  T IYTN+N++
Sbjct: 322 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNE 365


>gi|238025621|ref|YP_002909853.1| Phage integrase family protein [Burkholderia glumae BGR1]
 gi|237880286|gb|ACR32617.1| Phage integrase family protein [Burkholderia glumae BGR1]
          Length = 586

 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 81/178 (45%), Gaps = 34/178 (19%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI--------MDDQSTLRIQGKGDKIRIVP----- 201
           R++ +L L Y  GLR +E  + T  ++        ++D   LR+ GKG + R VP     
Sbjct: 380 RDAFVLLLAYATGLRRAELAAATTGDLSRKALDGALEDAYVLRVDGKGRRRREVPMPARL 439

Query: 202 --LLPSVRKAILEYYDL--CPFDLNLNIQLPLFRGIRGKPLNP--------GVFQRYIRQ 249
             LL +  +A  E   L   P D  L   L     + G  L+P        G+F R   +
Sbjct: 440 MNLLRAELRARAEPLSLETAPADTPLVAHL-----VTGAALHPNTIGALFKGIFARAAER 494

Query: 250 LR-RYLGLPLS---TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           L   Y G        + H LRH+FA H L  G D+R +Q++LGH  L+TT  Y   ++
Sbjct: 495 LAPSYPGAAADLQRGSTHWLRHTFANHGLDAGADIRDMQALLGHASLATTTHYAKGDA 552


>gi|254504131|ref|ZP_05116282.1| site-specific recombinase, phage integrase family [Labrenzia
           alexandrii DFL-11]
 gi|222440202|gb|EEE46881.1| site-specific recombinase, phage integrase family [Labrenzia
           alexandrii DFL-11]
          Length = 171

 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 59/119 (49%), Gaps = 7/119 (5%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQ 249
           QGKG K     L P +   + +Y+              LF G  +  P++PG+  R    
Sbjct: 38  QGKGCKDHKAMLSPDLLDVLRDYWR------EARPHGRLFPGRPKVNPISPGLLTRTFTS 91

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            +R        T HTLRHSFATHLL    D+R IQ +LGH +L+TT  YT+V ++   D
Sbjct: 92  AKRMAAFSKPATLHTLRHSFATHLLEANTDVRIIQVLLGHTKLTTTARYTHVATRTIRD 150


>gi|190015705|ref|YP_001967309.1| phage integrase family protein [Bacillus cereus]
 gi|116584612|gb|ABK00729.1| phage integrase family protein [Bacillus cereus]
          Length = 319

 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 124/287 (43%), Gaps = 41/287 (14%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T Q Y  D   FL ++      K TI TI++LS+ ++  +  +  ++K    +L+R 
Sbjct: 34  SERTKQQYLHDLSHFLRYI------KETIGTIQELSHNDMEIYFYQL-SKKYAATTLRRK 86

Query: 92  LSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
            + ++ FLKY+      ++  S+ L   ++KK   + R L  ++      N +L T  +T
Sbjct: 87  KTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLFPEEV-----NEILDTLKKT 141

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPS 205
            +      ++ +LL   GLRI E  +    ++    S     LR+ GKG+K R V +   
Sbjct: 142 NFF---MYSLFFLLTTTGLRIEEVANAKWADLAFHPSLNVYLLRVVGKGNKTREVRIFED 198

Query: 206 VRKAILEYYDLCPF--------DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           V        DLC          +L+ +          G         +Y+ +      LP
Sbjct: 199 VLN------DLCRLRQLRKQTSELDASSSSAFLPKADGSHYRADYLSKYVAEKIEETNLP 252

Query: 258 L------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                    T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y
Sbjct: 253 FLRYRKDRITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERY 299


>gi|254785545|ref|YP_003072974.1| site-specific recombinase, phage integrase family [Teredinibacter
           turnerae T7901]
 gi|237687332|gb|ACR14596.1| site-specific recombinase, phage integrase family [Teredinibacter
           turnerae T7901]
          Length = 325

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 23/143 (16%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I  +    G R SEA +L P  + +++ T   + K  K+R VP+ P +   IL       
Sbjct: 186 IARVCLATGARWSEAATLKPSQVKNNKVTFS-KTKSGKVRAVPIAPELAALILN------ 238

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
                    PL  G          F+R + +L   L LP    +H LRH+FA+H + NGG
Sbjct: 239 -------SAPLVDGY-------SAFKRTVGKLD--LELPPGQLSHVLRHTFASHFVMNGG 282

Query: 279 DLRSIQSILGHFRLSTTQIYTNV 301
           ++ ++Q ILGH  +  T  Y ++
Sbjct: 283 NILTLQKILGHADIKMTMRYAHL 305


>gi|78356957|ref|YP_388406.1| integrase/recombinase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219362|gb|ABB38711.1| integrase/recombinase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 304

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 97/215 (45%), Gaps = 5/215 (2%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           SL R  + +++F  +  +  +  ++   ++R  +    LP  L   +   L+  +   T 
Sbjct: 83  SLHRMKAAVRAFFAWAAETGVVGDNPARSIRMHRLPRKLPVFLTTAEKKRLLKELKGRTD 142

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
             T     R+ A++ +L G G+R+ E  +L   +I  D   LR++ KG+  ++  +   +
Sbjct: 143 FST----LRDRAMIEVLLGTGIRLGELTALDMDDIDLDAKHLRVRAKGNVPQVKFIKTDL 198

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           R  +  Y           ++        G+     +  R    LR+  G+    T H LR
Sbjct: 199 RTLLRRYLAERRRHGRPEMEALFLSNRDGRLCQRQIANRLAHWLRKA-GIEKELTPHGLR 257

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H+FATHL     DL  +Q  LGH  +STTQIYT++
Sbjct: 258 HTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHL 292


>gi|89147392|gb|ABD62556.1| integrase [uncultured bacterium]
          Length = 163

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 43/69 (62%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R   L     QR I+   R  G+    T HTLRHSFATHLL  G D+R++Q +LGH  +
Sbjct: 94  VRRHHLADETIQRAIKAACRRAGITKHATPHTLRHSFATHLLQGGYDIRTVQELLGHENV 153

Query: 293 STTQIYTNV 301
           +TT IYT+V
Sbjct: 154 ATTMIYTHV 162


>gi|159038058|ref|YP_001537311.1| integrase family protein [Salinispora arenicola CNS-205]
 gi|157916893|gb|ABV98320.1| integrase family protein [Salinispora arenicola CNS-205]
          Length = 330

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 7/121 (5%)

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRY 246
           + GKG + R+VP+ P + + + +Y D C          P   L    RG+PL  G  Q  
Sbjct: 188 VAGKGGRPRVVPVEPELDQVLADYLDSCRRRFGSRCVRPDASLLMDRRGEPLRRGGLQYL 247

Query: 247 IRQLRRYLGL----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +    R  G+    P     H LRH+FAT L  +G     I  +LGH  L+++Q Y  V 
Sbjct: 248 VDSCFRRAGIGDRVPPGARLHALRHTFATRLAEDGASAAEIMRLLGHVSLASSQAYIEVT 307

Query: 303 S 303
           +
Sbjct: 308 A 308


>gi|218848058|ref|YP_002454802.1| integrase/recombinase, phage integrase family protein [Bacillus
           cereus G9842]
 gi|218546189|gb|ACK98582.1| integrase/recombinase, phage integrase family protein [Bacillus
           cereus G9842]
          Length = 361

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 139/326 (42%), Gaps = 47/326 (14%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIF-----LAFYTEEKIT------IQTIRQLSYTE 70
           ++ LE++  LS  TL +Y  +  +F  +     LA      +T      I+T++ L   +
Sbjct: 25  IEYLEMKTALSPATLYAYITEFEKFFKWIILKRLAVVNGNVVTNITDIPIETLQTLPLND 84

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +  F    + + I  R++ R+ S +KS  KYL +            RN+ +   L +   
Sbjct: 85  VNRFHMYLQGEGIETRAINRTFSALKSLFKYLAQNSEDEHGKSYLSRNVMEKIELHKEKV 144

Query: 131 EKQA-LTLVDNVLLHTSHETKWI-------------------------DARNSAILYLLY 164
           +  A    V N++ + + +  ++                           R+ A++ L+ 
Sbjct: 145 DAAARADEVANIIFNDNEDVAFLRFLINDYATILKETSTRKYNYFLRDKERDIALISLIL 204

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD------LCP 218
           G GLR+SE  SLT  +I   Q T+++  KG+K   +    S    + EY        +CP
Sbjct: 205 GTGLRVSELASLTLSSINFRQGTIKVTRKGNKKSSILATKSCLDDVQEYMKVRLEKYMCP 264

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
            + ++ + +  ++G +   L+    Q  + +           + H LRH++AT+      
Sbjct: 265 PEEDI-LFVTRYQG-KYTQLSVRAIQNLVEKYSS--AFDEKRSPHKLRHTYATNHYKENK 320

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSK 304
           DL  ++  LGH  +  T IYTN+N++
Sbjct: 321 DLVLLRDQLGHTSVEVTSIYTNINNE 346


>gi|307323013|ref|ZP_07602264.1| integrase family protein [Sinorhizobium meliloti AK83]
 gi|306891340|gb|EFN22275.1| integrase family protein [Sinorhizobium meliloti AK83]
          Length = 328

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 106/246 (43%), Gaps = 27/246 (10%)

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPRALNEKQALTLVDNVL 142
           RS    L+ +KSF +YL+ R        L +  +   K   +L  +L+  +        L
Sbjct: 77  RSRNARLAAVKSFFRYLEHRVPAVLDQALRVHAMPMKKIDEALVASLSRTEV-----QAL 131

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIV 200
           L+          R+ A+L+L +  GLR+SE + LT  +  D +S  ++ I GKG + R++
Sbjct: 132 LNAPDRRSLSGIRDRAMLHLAFAGGLRVSELVGLT-LDQFDGRSPASIHIIGKGRRERVL 190

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           PL      AI  +  + P     N    LF    G+ +    F+ YI +      + ++ 
Sbjct: 191 PLWQETAAAIRAWIAVRP----KNGDTALFLNNAGRMMTRSGFE-YILEKHAAAAVSVAP 245

Query: 261 T-------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           T        H LRHS A H+L    D+R +   LGH  L + +IY   +        +E+
Sbjct: 246 TLTTKSISPHVLRHSCAMHMLQATRDIRKVALWLGHASLQSAEIYLRADPTEK----LEM 301

Query: 314 YDQTHP 319
            D   P
Sbjct: 302 LDALAP 307


>gi|260907656|ref|ZP_05915978.1| phage integrase family protein [Brevibacterium linens BL2]
          Length = 265

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 99/211 (46%), Gaps = 18/211 (8%)

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           SG KS +    +R+    S +     L++   LP AL+   A  LV      TS  T W 
Sbjct: 50  SGEKSGMLAHTRRRHQPRSAL----RLREPKKLPVALSTADATKLV------TSLRT-W- 97

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
             R+ A+  L+  CGLR  E L+L  +++      + + GKG K R VPL   V  ++++
Sbjct: 98  --RDRAMAGLMLWCGLRSCEVLALHVKDVDIGGRWITVTGKGAKQRRVPLDADV-ASVID 154

Query: 213 YYDLCPFDLNLNIQLPLF-RGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            Y L     + + QL L  +G  RG+ L     +   R  R   G+      H LRH+F 
Sbjct: 155 VYLLAERPASDSDQLFLVAKGTHRGQGLTAAGLRTIFRYHRDLTGVA-GGHPHALRHTFG 213

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T L   G DL  +Q++LGH  + TT  Y ++
Sbjct: 214 TVLAEAGVDLAVMQALLGHAHVDTTARYVHL 244


>gi|126664740|ref|ZP_01735724.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126664867|ref|ZP_01735851.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126666649|ref|ZP_01737627.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126666883|ref|ZP_01737859.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126628599|gb|EAZ99220.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126629037|gb|EAZ99656.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126631066|gb|EBA01680.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126631193|gb|EBA01807.1| phage-related integrase [Marinobacter sp. ELB17]
          Length = 336

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 27/177 (15%)

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRI 199
            LL     T W   R++A+L +LY  G R+SE + +   +I +   +++R+ GKG K R 
Sbjct: 138 ALLAAPGITTWCGRRDTAMLTVLYNTGARVSELIGIRVADITLAATASVRLHGKGRKQRT 197

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYLGLPL 258
           VPL     K I ++        +L+++ PL     G P+    V +R        L L +
Sbjct: 198 VPLWKETAKEIRQWLKYA----DLHVEQPLIPNRSGLPMTRTNVAER--------LNLAV 245

Query: 259 ST-------------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           ST             + HT RH+ A HLL  G DL  I   LGH    TT  Y   +
Sbjct: 246 STATKMCPQLAGRRISPHTWRHTTAMHLLQAGVDLTVIALWLGHESPVTTHGYVEAD 302


>gi|89147420|gb|ABD62570.1| integrase [uncultured bacterium]
          Length = 163

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 43/69 (62%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R   L+    QR ++     +GL    + H LRHSFATHLL  G D+R++Q +LGH  +
Sbjct: 94  VRRHHLHEKALQRAVKDASLKVGLTKQMSCHVLRHSFATHLLEGGYDIRTVQELLGHADV 153

Query: 293 STTQIYTNV 301
           STT IYT+V
Sbjct: 154 STTMIYTHV 162


>gi|253771281|ref|YP_003034141.1| putative integrase/recombinase [Clostridium botulinum D str. 1873]
 gi|253721433|gb|ACT33725.1| putative integrase/recombinase [Clostridium botulinum D str. 1873]
          Length = 272

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 134/289 (46%), Gaps = 51/289 (17%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE--IRAFISKRRTQKIGD 85
           ++  SK T+ +Y+ D ++F+    ++ + K+ I TI    + +  + A +       +  
Sbjct: 14  QKDKSKKTIYTYKNDIKRFI---EYFEKNKLEINTINMRKFKDYLLEALL-------LSP 63

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           +++ R++  I+ FL+Y+    I      + M  +++   L   L   + + ++       
Sbjct: 64  KTVNRNIIAIRQFLEYIHINNID-----IKMIKIQEQGFLEDTLTNDEVIRMI------- 111

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
               K  D R  A +  LY  G+R+SEA+SL  ++I  ++ ++RI GKG K R + L+P 
Sbjct: 112 KETEKMHDLRAKAFICTLYYTGMRVSEAISLLSEDI--NKDSIRILGKGGKYRDI-LIPK 168

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRG-----KPLNPGVFQRY-----IRQLRRYLG 255
             K I + Y +    +  N    LF G  G       LN  + ++Y     I++ + Y  
Sbjct: 169 KLKNIWKDYMI----VRENNSDKLFTGREGGISRFTALN--IVKKYGHMAKIKKDKVY-- 220

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
                  H  RH +  +L+  G  L +I+ + GH  +STT IYT  + K
Sbjct: 221 ------NHAFRHLYCLNLVDRGIPLDAIKDLAGHKNISTTIIYTRKSKK 263


>gi|188989765|ref|YP_001901775.1| tyrosine recombinase [Xanthomonas campestris pv. campestris str.
           B100]
 gi|167731525|emb|CAP49700.1| tyrosine recombinase [Xanthomonas campestris pv. campestris]
          Length = 327

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 85/181 (46%), Gaps = 37/181 (20%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD----- 215
           LLYG G+R+ E L L  +++   +  + ++ GKG K R VPL  S+R  +++  +     
Sbjct: 131 LLYGSGMRLLECLRLRIKDVDMVRCEIVVRDGKGGKDRRVPLPRSLRGELMQQRERALLL 190

Query: 216 --LCPFDLNLNIQLP--LFRGIRGKPLNPG-----------VFQRYIRQLRRYL------ 254
                 +    + LP  L R      + PG           V  R  R  R ++      
Sbjct: 191 HAADLAEGAGQVFLPHALARKYPSADVEPGWQYLFPAARRSVDPRSGRVGRHHVSEEILQ 250

Query: 255 ----------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
                     G+    T HTLRH+FATHLL  G D+R++Q +LGH  ++TTQIYT+V  +
Sbjct: 251 RAVQAARRRAGIDKPATCHTLRHAFATHLLEAGHDIRTVQELLGHKDVATTQIYTHVLGR 310

Query: 305 N 305
            
Sbjct: 311 G 311


>gi|154505016|ref|ZP_02041754.1| hypothetical protein RUMGNA_02526 [Ruminococcus gnavus ATCC 29149]
 gi|153794686|gb|EDN77106.1| hypothetical protein RUMGNA_02526 [Ruminococcus gnavus ATCC 29149]
          Length = 288

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 125/290 (43%), Gaps = 29/290 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ LE    +  L  +S  C       FL +  +        ++L+  ++R F+  +
Sbjct: 8   EKYLEQLEEAGKIRNLKDRSISCYKNYVSYFLKYQNKNP------KELTCQDVRVFLLAK 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLK---YLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           + + +   +L    S I+ F +   ++    IT    IL        + LP  L   +  
Sbjct: 62  KEEGLKATTLNLYNSAIRFFYRNVLHILWDDITVPRMIL-------EHKLPTVLTASEID 114

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+D V           D +  A+  ++Y  G+R+SE + L   +I   +  + ++   +
Sbjct: 115 RLLDAV----------DDIKYKAMFAVMYSSGMRVSEVIHLHYDDISRSKMQINVRDTKN 164

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           ++    +L      IL  Y    F+      +       G  L     ++ +R+      
Sbjct: 165 RMDRYTILSKRCLDILTQY---WFEKGRPRGILFPNKFTGNYLTVSTLEQVMRRAVADTE 221

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           LP + T H LRHSFATHL+  G +  +IQ++LGH    +T++Y +V++K+
Sbjct: 222 LPKAATPHCLRHSFATHLMEQGIERHNIQALLGHRDPKSTEVYLHVSNKS 271


>gi|89147410|gb|ABD62565.1| integrase [uncultured bacterium]
          Length = 167

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 40/60 (66%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             Q  +R+  R   +    T HTLRHSFATHLL NG D+R++Q +LGH  ++TT IYT+V
Sbjct: 107 ALQTAVREAVRAAQVAKRATCHTLRHSFATHLLENGYDIRTVQELLGHREVATTMIYTHV 166


>gi|257439773|ref|ZP_05615528.1| tyrosine recombinase XerC [Faecalibacterium prausnitzii A2-165]
 gi|257197793|gb|EEU96077.1| tyrosine recombinase XerC [Faecalibacterium prausnitzii A2-165]
          Length = 395

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 145/315 (46%), Gaps = 56/315 (17%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLA-----FYTEEKITIQTIRQLSYTEIRAFI 75
           +++ LE+  G S  T  SY CD R F  F+         + +I     + L  T     +
Sbjct: 26  YVRYLEVIAGKSANTAFSYYCDLRGFSRFMKRRRGLVPADTEIKDIDPKGLD-TAFWGSV 84

Query: 76  SKRR--------TQKIGDR--SLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNS 124
           SK           ++ G++  S  R L+ +  F  YL  +    TE+   +++  K+   
Sbjct: 85  SKEDIYEYLYFLNRECGNKKSSTARRLASLHGFYDYLVNQVNKLTENPTASIKPPKQDKV 144

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP+ L  +Q++ L+++    T +++ + + R+  ++ L   CG+R+SE + +   +I  +
Sbjct: 145 LPKYLTAEQSMDLLES----TQYQSDFPE-RDYCMVVLFLNCGMRLSELVGMDLGDIDLE 199

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP---G 241
           Q  +R+ GKG K R+V L  +  +A               +QL L +    + LNP    
Sbjct: 200 QRQIRLFGKGHKERMVYLNEACVEA---------------LQLYLAKRNTMEGLNPKEKA 244

Query: 242 VF----------QRYIRQL----RRYLGLPLSTTAHTLRHSFATHLLSNGG-DLRSIQSI 286
           VF           R + QL     +  GL   +T H LRH+ AT +   G  D+ +++ +
Sbjct: 245 VFVTRRRKERISNRRVEQLVTGAMKAAGLKGFST-HKLRHTAATLMYQTGNVDILTLKQL 303

Query: 287 LGHFRLSTTQIYTNV 301
           LGH  + TTQIYT++
Sbjct: 304 LGHSSVGTTQIYTHL 318


>gi|229101972|ref|ZP_04232686.1| Site-specific recombinase, phage integrase [Bacillus cereus
           Rock3-28]
 gi|228681555|gb|EEL35718.1| Site-specific recombinase, phage integrase [Bacillus cereus
           Rock3-28]
          Length = 384

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 107/226 (47%), Gaps = 6/226 (2%)

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +T  + D ++   +  +K+F+ +  +++I +++        +K N+    L+  +   L+
Sbjct: 132 QTVGLADETISSRIKRLKTFINWCLRQEIISKNPFNKFEGFRKDNTQIDILSVDELNNLL 191

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGD 195
                +++   K    R+  +L+LL     RI+EAL L+P NI      + IQ    K  
Sbjct: 192 KMAKSYSNKSFKHF--RDYVLLHLLIDGMFRITEALLLSPSNIDHTNRAVIIQSNNAKSR 249

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R VPL     + +++  +        ++   +F  + G+ L+     R +R+      
Sbjct: 250 KSRTVPLSNKTYRLLIQLLEENE-AFEDDVDDLIFLSLSGRMLSKNNVLRDMRKYAIEAK 308

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +      H +RHS ATH LS+ GD+ S++ ILGH  L T  IY+++
Sbjct: 309 IKKRFYLHLIRHSAATHYLSSSGDVESLRKILGHADLRTVLIYSHL 354


>gi|119855366|ref|YP_935969.1| phage integrase family protein [Mycobacterium sp. KMS]
 gi|119867745|ref|YP_937697.1| phage integrase family protein [Mycobacterium sp. KMS]
 gi|119693834|gb|ABL90907.1| phage integrase family protein [Mycobacterium sp. KMS]
 gi|119698083|gb|ABL95154.1| phage integrase family protein [Mycobacterium sp. KMS]
          Length = 364

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 126/322 (39%), Gaps = 72/322 (22%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR------ 79
           +IER  S  T+++Y  D + +  FLA    +   +Q        ++ AF+S  R      
Sbjct: 33  DIER--SPNTIKAYAHDLKDWFTFLAGRGPDWTAVQ------LEDVGAFVSWLRLPMALR 84

Query: 80  ----------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTE------------------- 110
                         G+ ++ R LS + +F  Y  +  +                      
Sbjct: 85  QSGIVMLPTMEHHCGEATVNRKLSALAAFYTYAARDGVAVGELLTTWQVGGSRGGWKPFL 144

Query: 111 ---SNIL----NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
              SN +     M  LK +  LPR L   +A  ++D+              R+  +L +L
Sbjct: 145 HHVSNRMPRSRRMVTLKTAKKLPRILTPVEAQAVLDSC----------DRLRDRFLLAVL 194

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQ---------GKGDKIRIVPLLPSVRKAILEYY 214
           Y  G+R+ EAL L   +I   +  + I+          K    R VP+ P + +   +Y 
Sbjct: 195 YDTGMRVGEALGLRHSDIAAAECEITIRRRDNDNGARAKSVSSRTVPVSPELIRLYADYL 254

Query: 215 DLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                DL+ + + + L+    G P         +R+LRR  G+      H LRH+ AT +
Sbjct: 255 HDEYGDLDSDYVFVNLWGRPHGHPWTYAAVYDLVRRLRRRTGIDFD--PHWLRHTAATRM 312

Query: 274 LSNGGDLRSIQSILGHFRLSTT 295
           L +G  L  +  +LGH  ++TT
Sbjct: 313 LRDGIGLEVVAKLLGHANVTTT 334


>gi|89147434|gb|ABD62577.1| integrase [uncultured bacterium]
          Length = 163

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 41/63 (65%)

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +P   QR I+   R   L    T HTLRHSFATHL+ +G D+R+IQ +LGH  + TT IY
Sbjct: 100 SPKTLQRAIKGAARAARLAKPVTCHTLRHSFATHLIEDGYDIRTIQELLGHTDVRTTMIY 159

Query: 299 TNV 301
           T+V
Sbjct: 160 THV 162


>gi|24375372|ref|NP_719415.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24350199|gb|AAN56859.1|AE015821_4 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 310

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 112/233 (48%), Gaps = 15/233 (6%)

Query: 86  RSLKRSLSGIKSFLKY---LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           RS+ R+++ IKS +K    + +  +   ++I ++ N+K        L+ +Q   L+   L
Sbjct: 67  RSINRAMTAIKSIVKVAALMGEADMQQVAHINSIANMKHGAHQGNPLSAEQVTKLL--AL 124

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVP 201
           L    +T  +  R  AI  L  G GLR SE  +LT  +     ST+++  GKG+K RI+ 
Sbjct: 125 LSKRQDTYGL--RTLAIFALFLGTGLRRSELAALTLADYDSATSTIKVVAGKGNKSRILF 182

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--RGKPLNPGVFQRYIRQLRRYLGLPLS 259
           L   V + ++ + ++    L   I      GI    +P++     R ++     +G+ + 
Sbjct: 183 LPDWVEQHVIAWLNVRKMQLGPLICHCRTTGIIVHYRPVSRDALYRLVKDKLGDIGV-VG 241

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            + H LR +F T LL    D+ +++ + GH  +STT IY     K G  +M E
Sbjct: 242 ASPHDLRRTFITRLLEQNVDINTVRQMAGHADISTTTIY----DKRGDAFMRE 290


>gi|13541557|ref|NP_111245.1| integrase/recombinase [Thermoplasma volcanium GSS1]
 gi|14324952|dbj|BAB59878.1| integrase / recombinase [Thermoplasma volcanium GSS1]
          Length = 123

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 4/127 (3%)

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           ++ C LR+ EA  L   NI DD  T+++ GKG K R+V L P  ++A+++Y  +   + N
Sbjct: 1   MFNCVLRLKEACDLKISNIYDD--TIKVLGKGQKERLVYLPPETKEALMDYLKVRTPEKN 58

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
           L  +  +F     K L+   F +   ++    G+      H +RH++AT L  +G ++  
Sbjct: 59  LEDRDYVFTTASWKKLSYNYFTKICHEISIMAGVKWH--PHMVRHTYATELFKSGVNIYY 116

Query: 283 IQSILGH 289
           +  +LGH
Sbjct: 117 VARLLGH 123


>gi|225378079|ref|ZP_03755300.1| hypothetical protein ROSEINA2194_03739 [Roseburia inulinivorans DSM
           16841]
 gi|225210080|gb|EEG92434.1| hypothetical protein ROSEINA2194_03739 [Roseburia inulinivorans DSM
           16841]
          Length = 349

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 13/222 (5%)

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           +R LKR L+ ++SF +YL K ++  +   + +   K        L+  +   L+D V   
Sbjct: 108 ERGLKRKLASLRSFYRYLYKNEMIGQDPAVKVDMPKIHEKTITRLDIDEVANLLDEVESG 167

Query: 145 TSHETKW------IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            S   K          R+ A++ LL G G+R+SE + L   ++    + ++I  KG    
Sbjct: 168 ESLTEKQQKFHEKTKTRDLAMMTLLLGTGIRVSECVGLDMDDVDFKNNGIKIHRKGGAEV 227

Query: 199 IVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +V     VR A++EY      +   D ++N    LF  ++ K ++    ++ + +  + +
Sbjct: 228 VVYFGEEVRSALMEYMVERQKITAADGSVN---ALFLSLQNKRISVRSVEKMVNKYSKLV 284

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
                 T H LR ++ T L    GD+  +  +LGH  ++TT+
Sbjct: 285 TSLKHITPHKLRSTYGTSLYRETGDIYLVADVLGHKDVNTTR 326


>gi|78355959|ref|YP_387408.1| integrase/recombinase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218364|gb|ABB37713.1| integrase/recombinase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 304

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 97/215 (45%), Gaps = 5/215 (2%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           SL R  + +++F  +  +  +  ++   ++R  +    LP  L   +   L+  +     
Sbjct: 83  SLHRMKAAVRAFFAWASEAGVVDDNPARSIRMHRLPRKLPVFLTTAEKKRLLKEL----K 138

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
             T +   R+ A++ +L G G+R+ E  +L   +I  D   LR++ KG+  ++  +   +
Sbjct: 139 GRTDFSALRDRAMIEVLLGTGIRLGELAALDMDDIDLDAKHLRVRAKGNVPQVKFIKTDL 198

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           R  +  Y           ++        G+     +  R    LR+  G+    T H LR
Sbjct: 199 RTLLRRYLAERRRHGRPEMEALFLSNRDGRLCQRQIANRLAHWLRKA-GIEKELTPHGLR 257

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H+FATHL     DL  +Q  LGH  +STTQIYT++
Sbjct: 258 HTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHL 292


>gi|158314469|ref|YP_001506977.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158109874|gb|ABW12071.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 377

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 15/163 (9%)

Query: 155 RNSAILYLLYGCGLRISEALSL----------TPQ----NIMDDQSTLRIQGKGDKIRIV 200
           R++ +L ++YG GLR +EA  +           P+     ++  +      G G + R V
Sbjct: 192 RDATVLKVIYGWGLRCNEASRIDLVDFYRNPKAPELGRFGLLHVRYGKGANGSGPRRRTV 251

Query: 201 P-LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
             ++P   +A+ ++ D     +       L+   RG  L P   +      R  L LP  
Sbjct: 252 ASVMPWAVEAVEDFVDNVRPRMGSREHPALWVTERGGRLKPREIEERFAAYRDALALPTE 311

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            T H LRHS+ THL+ +G D + +Q  +GH   ST  IYT+V+
Sbjct: 312 LTPHCLRHSYVTHLIEDGADPKFVQEQVGHRYASTLGIYTHVS 354


>gi|258516804|ref|YP_003193026.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257780509|gb|ACV64403.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 348

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 114/245 (46%), Gaps = 17/245 (6%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN--EKQALTLVDNVLLHTSHET 149
           L+ +++FLKYL  R ++      +   +++     + +    K+A++     LL     +
Sbjct: 90  LASLRAFLKYLSSRDVSYLHLSQSASQIERRKVYTKKVTGMSKKAVS----ALLEAPDSS 145

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNI-MD-DQSTLRIQGKGDKIRIVPLLPSVR 207
                R+ A++ ++Y    RI E LS+  + + +D D+  + + GK  KIR + LLP   
Sbjct: 146 TKAGRRDIALMVVMYSTAARIDEILSMRIEQLHLDTDKPNITVIGKRGKIRTLYLLPKA- 204

Query: 208 KAILEYYDLCPFDLNLNIQLPLF----RGIRGKPLNPGV---FQRYIRQLRRYLG-LPLS 259
            A L  Y         N    +F     G  GK     V    +++ +  R   G +P  
Sbjct: 205 TAHLRAYIKDSHGATPNPSSFVFYSRNTGPAGKMSQKAVNKQLRKHAQAARSVCGEVPAE 264

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
             AH LRH+ ++H L +G ++  I  +LGH +L TT +Y ++ ++     +  + D+   
Sbjct: 265 IHAHQLRHAKSSHWLEDGMNIVQISFLLGHAQLQTTMVYLDITTEQEAKALATLEDENDK 324

Query: 320 SITQK 324
           S+T+K
Sbjct: 325 SLTKK 329


>gi|239917189|ref|YP_002956747.1| site-specific recombinase, integrase family [Micrococcus luteus
           NCTC 2665]
 gi|281414340|ref|ZP_06246082.1| site-specific recombinase, integrase family protein [Micrococcus
           luteus NCTC 2665]
 gi|239838396|gb|ACS30193.1| site-specific recombinase, integrase family [Micrococcus luteus
           NCTC 2665]
          Length = 312

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 107/240 (44%), Gaps = 32/240 (13%)

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  Q  G R      SG K FL ++ K K      I+    L   + LPR L+  +  T+
Sbjct: 77  RAWQPAGGRG-----SGWKPFLHHISKGKPQARRAIV----LSAQSKLPRVLSAAEVQTI 127

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------ 191
           +D       H       R+  +  +L+  G+RI EAL L  ++I   +S + +Q      
Sbjct: 128 LDAC----DH------LRDRFLFAVLFDTGMRIGEALGLRHEDIAAAESQITVQRRVNDN 177

Query: 192 ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYI 247
               K    R VP+   + +   +Y  L   DL+ + + + L+    G PL        +
Sbjct: 178 GARSKSCAPRTVPVSAELVRLYADYLHLEYDDLDSDYVFVNLWGRPHGHPLTYTAVYDLV 237

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL-STTQIYTNVNSKNG 306
           ++LRR  G+      H  RH+ AT +L +G  +  +  +LGH  + +TT +Y ++++++ 
Sbjct: 238 KRLRRRTGIDFDP--HWYRHTAATRMLRDGVPIEVVSKLLGHADITTTTAVYGHLSAEDA 295


>gi|239918537|ref|YP_002958095.1| site-specific recombinase, integrase family [Micrococcus luteus
           NCTC 2665]
 gi|281415254|ref|ZP_06246996.1| site-specific recombinase, integrase family protein [Micrococcus
           luteus NCTC 2665]
 gi|239839744|gb|ACS31541.1| site-specific recombinase, integrase family [Micrococcus luteus
           NCTC 2665]
          Length = 395

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 107/240 (44%), Gaps = 32/240 (13%)

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  Q  G R      SG K FL ++ K K      I+    L   + LPR L+  +  T+
Sbjct: 160 RAWQPAGGRG-----SGWKPFLHHISKGKPQARRAIV----LSAQSKLPRVLSAAEVQTI 210

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------ 191
           +D       H       R+  +  +L+  G+RI EAL L  ++I   +S + +Q      
Sbjct: 211 LDAC----DH------LRDRFLFAVLFDTGMRIGEALGLRHEDIAAAESQITVQRRVNDN 260

Query: 192 ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYI 247
               K    R VP+   + +   +Y  L   DL+ + + + L+    G PL        +
Sbjct: 261 GARSKSCAPRTVPVSAELVRLYADYLHLEYDDLDSDYVFVNLWGRPHGHPLTYTAVYDLV 320

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL-STTQIYTNVNSKNG 306
           ++LRR  G+      H  RH+ AT +L +G  +  +  +LGH  + +TT +Y ++++++ 
Sbjct: 321 KRLRRRTGIDFDP--HWYRHTAATRMLRDGVPIEVVSKLLGHADITTTTAVYGHLSAEDA 378


>gi|154504725|ref|ZP_02041463.1| hypothetical protein RUMGNA_02232 [Ruminococcus gnavus ATCC 29149]
 gi|153794899|gb|EDN77319.1| hypothetical protein RUMGNA_02232 [Ruminococcus gnavus ATCC 29149]
          Length = 288

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 124/290 (42%), Gaps = 29/290 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ LE    +  L  +S  C       FL +  +        ++L+  ++R F+  +
Sbjct: 8   EKYLEQLEEAGKIRNLKDRSISCYKNYVSYFLKYQNKNP------KELTCQDVRVFLLAK 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLK---YLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           + + +   +L    S I+ F +   ++    IT    IL        + LP  L   +  
Sbjct: 62  KEEGLKATTLNLYNSAIRFFYRNVLHILWDDITVPRMIL-------EHKLPTVLTASEID 114

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+D V           D +  A+  ++Y  G+R+SE + L   +I      + ++   +
Sbjct: 115 RLLDAV----------DDIKYKAMFAVMYSSGMRVSEVIHLHYDDISRSNMQIHVRDTKN 164

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           ++    +L      IL  Y    F+      +       G  L     ++ +R+      
Sbjct: 165 RMDRYTILSKRCLDILTQY---WFEKGRPRGILFPNKFTGNYLTVSTLEQVMRRAVADTE 221

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           LP + T H LRHSFATHL+  G +  +IQ++LGH    +T++Y +V++K+
Sbjct: 222 LPKAATPHCLRHSFATHLMEQGIERHNIQALLGHRDPKSTEVYLHVSNKS 271


>gi|317014808|gb|ADU82244.1| integrase/recombinase (xerD) [Helicobacter pylori Gambia94/24]
          Length = 356

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 129/276 (46%), Gaps = 29/276 (10%)

Query: 48  IFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKR 105
           +FL F Y ++ + +++ R LS  ++  F+ +   Q     S+ + +  ++ F  YL +KR
Sbjct: 77  LFLFFNYFKDNLKLRSFRMLSEEQVINFLFEL-AQNRKPSSMAKYVMYLRQFFDYLDRKR 135

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
           +   +  + N+   K   SLPR LN+K   + +  +L +    +   + RN  IL ++  
Sbjct: 136 RYGFDFTLKNLAFAKTKESLPRHLNDKDLKSFLKTLLDYKPATS--FEKRNKCILLIVIL 193

Query: 166 CGLRISEALSLTPQNIMDDQS--TLRIQGKGDK-----IRIVPLLPSVRKAILEYYDLCP 218
            GLR  E L++  ++I  ++   ++ IQGKG K     I+   L PS+   + + Y L  
Sbjct: 194 GGLRKCEVLNIELKHIQVEEQNYSILIQGKGRKERKAYIKKSLLEPSLNAWLSDEYRLKY 253

Query: 219 FDLNLNIQLPLFRGIRGKPLN--------PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           F+        LF+  + K  N        P +F+  + Q++ Y      T  H  RHSFA
Sbjct: 254 FN-----GAYLFKKDKQKAQNSLTLYNFIPLIFK--LAQIKHYK--QYGTGLHLFRHSFA 304

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           T +     DL      LGH  L +T+IY +   ++ 
Sbjct: 305 TLIYQETQDLVLTSMALGHSSLLSTKIYIHTTQEHN 340


>gi|124265889|ref|YP_001019893.1| phage integrase [Methylibium petroleiphilum PM1]
 gi|124258664|gb|ABM93658.1| phage integrase [Methylibium petroleiphilum PM1]
          Length = 338

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 127/282 (45%), Gaps = 53/282 (18%)

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           R +   EI AF+S    ++ G  S  ++ +       Y +  +      +  +   K S 
Sbjct: 61  RDMGALEIEAFLSHLALER-GVASATQNQAKAALLFLYKEVLRAVDLPWLTEVVAAKTSR 119

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            LP  L +++A  L+  + LH +H   W+ A       LLYG GLR+ E L L  +++  
Sbjct: 120 RLPVVLTQREARELL--MQLHGAH---WLAA------SLLYGSGLRLLECLRLRVKDVEF 168

Query: 184 DQSTLRI-QGKG--DKIRIVP--LLPSVRKAILEYYDLCPFDLN-----------LNIQL 227
           ++  L + QGKG  D++ ++P  LL  +R  + +   L   DL            L ++ 
Sbjct: 169 ERRELVVRQGKGSKDRVTVLPENLLLPLRNQLAQARALHERDLAAGRGAVWLPDALAVKF 228

Query: 228 PLFRGIRGK-----------PLNP--GV----------FQRYIRQLRRYLGLPLSTTAHT 264
           P  R  R              ++P  GV           QR +    R  G+    + H 
Sbjct: 229 P--RAARAWGWQWVFPSRVLSVDPRSGVERRHHLAEQGLQRAVSLAARRAGIDKPCSPHV 286

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           LRHSFATH+L  G D+R++Q +LGH  + TT IYT+V ++ G
Sbjct: 287 LRHSFATHMLQAGYDIRTVQELLGHADVKTTMIYTHVLNRGG 328


>gi|254994002|ref|ZP_05276192.1| integrase/recombinase [Listeria monocytogenes FSL J2-064]
          Length = 128

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 65/133 (48%), Gaps = 12/133 (9%)

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVFQRY 246
           GKG+K R VP       AI +Y    P   NL  +       L     G PL     +  
Sbjct: 1   GKGNKERYVPFGVYAEDAITDY---LPERANLMSRYKKSHDALLVNHYGDPLTTRGIRYC 57

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           + ++     L      H LRH+FAT LL+NG D+R++Q +LGH  LS+TQIYT+V  ++ 
Sbjct: 58  LSKIISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH- 116

Query: 307 GDWMMEIYDQTHP 319
              +   Y + HP
Sbjct: 117 ---LKATYMKHHP 126


>gi|196230879|ref|ZP_03129740.1| integron integrase [Chthoniobacter flavus Ellin428]
 gi|196225220|gb|EDY19729.1| integron integrase [Chthoniobacter flavus Ellin428]
          Length = 353

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 37/182 (20%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVP----------------- 201
           LLYG GLR+ E + L  +++   +  L +Q   G   ++ ++P                 
Sbjct: 163 LLYGAGLRMIECVRLRVKDVDFARGVLTLQETKGGQGRVTMLPETAREGLKRQLAKARAL 222

Query: 202 ------------LLP-----SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                       +LP      +R A   ++    F   +  + P    +R   ++    Q
Sbjct: 223 HEADRAAGANGVILPHALGEKLRHAATAWHWFWVFPSPVESRDPRSDVVRRHHVHEDSLQ 282

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R ++      G+    T H LRHSFATHLL  G D+R++Q +LGH  ++TT IYT+V ++
Sbjct: 283 RALKAAASRAGIAKPVTPHVLRHSFATHLLEKGQDIRTVQELLGHKDVATTMIYTHVLNR 342

Query: 305 NG 306
            G
Sbjct: 343 PG 344


>gi|239502669|ref|ZP_04661979.1| integrase [Acinetobacter baumannii AB900]
          Length = 194

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 16/184 (8%)

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           + R    K      D++ +  + +T     RN  +LY  +  GLR  E   L   ++ D 
Sbjct: 1   MARTTTGKAPYVSEDDLEITLATQTGVNALRNKCVLYFSHFLGLRAKELSMLKVGDVYDV 60

Query: 185 Q-----STLRIQG---KGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIR 234
           +       +R+ G   KG++ R V L+  + ++++E Y     P D +     PLF   +
Sbjct: 61  KKGKLKDIIRLLGNITKGNRYREVFLVNPIARSLVEEYITKERPKDPDA----PLFLSQK 116

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G P +P      I    +  G+    T+H+ R SFAT L+  GGD+ SIQ ++GH  + T
Sbjct: 117 GGPFSPNSMVTMINNCYKKAGI--QATSHSGRRSFATRLIRKGGDIYSIQQLMGHSSILT 174

Query: 295 TQIY 298
           TQ Y
Sbjct: 175 TQKY 178


>gi|303241940|ref|ZP_07328433.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302590495|gb|EFL60250.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 283

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 132/299 (44%), Gaps = 24/299 (8%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ++E  N+L+N       S  T++ Y  D R +  +      +  TI  IRQ +  E +++
Sbjct: 3   IEEFANFLKN----ENKSTNTIKGYIADIRDYNKWFHETFSKDFTI-IIRQ-NILEYKSY 56

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS--NSLPRALNEK 132
           +  +  ++   +++   LS +  +  YL  + I  E  I N   +K     + P  + E 
Sbjct: 57  L--QNIKRNNAKTINHKLSSLLKYNHYLVYKNIQKEIAIENNDKIKIQLQYASPTKVTET 114

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQ 191
           +    + ++L     E+K  + RN A++  L   GLRISEAL++   +  +D +  +   
Sbjct: 115 EVKQFLQSIL-----ESK--NLRNYALMVFLAYTGLRISEALNIKMDDFDLDGKECIIRT 167

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKGDK R V L   V  A+ EY  +       N    LF   + K L+     R  ++  
Sbjct: 168 GKGDKQRSVMLNSKVITAVKEYLKVRSNISTANGSNYLFVSRKNKKLDRTTVNRIFKKYS 227

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                  S T H LRH F T+ L  G     + +  GH  + TT +YTN + K   D M
Sbjct: 228 N------SITPHQLRHFFCTNALEKGMLAHEVANQAGHSNIHTTLLYTNPDKKKLIDKM 280


>gi|172041119|ref|YP_001800833.1| putative phage integrase [Corynebacterium urealyticum DSM 7109]
 gi|171852423|emb|CAQ05399.1| putative phage integrase [Corynebacterium urealyticum DSM 7109]
          Length = 265

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 69/155 (44%), Gaps = 30/155 (19%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
           AR   ++ L+   GLR  E   L   +++ D  TLR+ GKG   R VPL P +   I   
Sbjct: 118 ARTQLMIELMAYGGLRRGEVCKLRTCDLVGD--TLRVVGKGGHERFVPLPPHLSGQI--- 172

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTAHTLRH 267
                            RG+    L PG    ++     Y+G      LP   T H LRH
Sbjct: 173 -----------------RGMTAGYLFPGRIDGHLSAA--YVGKLIGRALPAGVTPHQLRH 213

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            FAT     G D+ ++QS+LGH +L TT IY  ++
Sbjct: 214 RFATVAYRKGRDIVAVQSLLGHAKLDTTMIYVALD 248


>gi|157265299|ref|YP_001467858.1| XerD-like integrase [Thermus phage P23-45]
 gi|156905194|gb|ABU96838.1| XerD-like integrase [Thermus phage P23-45]
          Length = 327

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 69/144 (47%), Gaps = 6/144 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           RN++IL L  G GLR +E   L   +I+ D+  +R+ GK     +VP    V +  L Y 
Sbjct: 166 RNASILALALGSGLRAAEICRLQVADILWDEMAVRVHGKTGH-GVVP----VTRETLRYL 220

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
            L   D       P     R +PL   V   +I++  +  G+      H LRH+FAT+ L
Sbjct: 221 RLY-LDRERKATSPYLFVHRNRPLTSEVLSHWIKRQAKVAGINKKVGMHLLRHTFATNYL 279

Query: 275 SNGGDLRSIQSILGHFRLSTTQIY 298
            +GGD  ++Q IL H   + T  Y
Sbjct: 280 KSGGDPFTLQRILRHKSPAMTSRY 303


>gi|108802537|ref|YP_642733.1| phage integrase [Mycobacterium sp. MCS]
 gi|108772956|gb|ABG11677.1| phage integrase [Mycobacterium sp. MCS]
          Length = 344

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 126/322 (39%), Gaps = 72/322 (22%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR------ 79
           +IER  S  T+++Y  D + +  FLA    +   +Q        ++ AF+S  R      
Sbjct: 13  DIER--SPNTIKAYAHDLKDWFTFLAGRGPDWTAVQ------LEDVGAFVSWLRLPMALR 64

Query: 80  ----------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTE------------------- 110
                         G+ ++ R LS + +F  Y  +  +                      
Sbjct: 65  QSGIVMLPTMEHHCGEATVNRKLSALAAFYTYAARDGVAVGELLTTWQVGGSRGGWKPFL 124

Query: 111 ---SNIL----NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
              SN +     M  LK +  LPR L   +A  ++D+              R+  +L +L
Sbjct: 125 HHVSNRMPRSRRMVTLKTAKKLPRILTPVEAQAVLDSC----------DRLRDRFLLAVL 174

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQ---------GKGDKIRIVPLLPSVRKAILEYY 214
           Y  G+R+ EAL L   +I   +  + I+          K    R VP+ P + +   +Y 
Sbjct: 175 YDTGMRVGEALGLRHSDIAAAECEITIRRRDNDNGARAKSVSSRTVPVSPELIRLYADYL 234

Query: 215 DLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                DL+ + + + L+    G P         +R+LRR  G+      H LRH+ AT +
Sbjct: 235 HDEYGDLDSDYVFVNLWGRPHGHPWTYAAVYDLVRRLRRRTGIDFD--PHWLRHTAATRM 292

Query: 274 LSNGGDLRSIQSILGHFRLSTT 295
           L +G  L  +  +LGH  ++TT
Sbjct: 293 LRDGIGLEVVAKLLGHANVTTT 314


>gi|77918979|ref|YP_356794.1| site-specific recombinase XerD [Pelobacter carbinolicus DSM 2380]
 gi|77545062|gb|ABA88624.1| site-specific recombinase XerD [Pelobacter carbinolicus DSM 2380]
          Length = 333

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 45/185 (24%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEY------- 213
           LLYG GLR+ E + L  Q +  +++ + ++ GKG K R      S+++A+ ++       
Sbjct: 139 LLYGGGLRLMECIRLRIQGLDFERNLIYLRDGKGGKDRTTIFPASMKRALQKHVEKVKQL 198

Query: 214 ---------------------YDLCPFDLNLNIQLPLFRGIRGKPLNP------------ 240
                                Y   P +       P     RG+  +P            
Sbjct: 199 HEQDLADGYGTVFLPHALAKKYPKAPQEFGWQYLFP----ARGRSTDPRSGKIRRHHVLE 254

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              Q+ ++      G+      HT RHSFATHLL NG ++R +Q ++GH  + TT+IYT+
Sbjct: 255 SGLQKAVKVAVNRAGIHKRVGCHTFRHSFATHLLENGVNIRVVQELMGHADVKTTEIYTH 314

Query: 301 VNSKN 305
           V +K+
Sbjct: 315 VMAKD 319


>gi|57167914|ref|ZP_00367054.1| DNA recombinase Cj0863c [Campylobacter coli RM2228]
 gi|57021036|gb|EAL57700.1| DNA recombinase Cj0863c [Campylobacter coli RM2228]
          Length = 354

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 96/187 (51%), Gaps = 12/187 (6%)

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K   LP  +NE +    ++ +    + + K    RN  I+ ++   G+R+SEA+++  ++
Sbjct: 160 KGAKLPEFMNEDELKKFLEAI---ENSDFKNNTIRNKLIIKIIIFTGIRVSEAINIKLKD 216

Query: 181 IMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKP 237
           I ++     +RI+ KG+K R+V     ++K ++E+  L    +N L+    LF    GK 
Sbjct: 217 ISEENELYIIRIRAKGNKYRVVM----IKKELIEHL-LKDVRVNYLSEDGLLFVNRNGKA 271

Query: 238 LNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           L      R + Q+    G+      AH LRH+FAT L     DL  +Q  LGH  L+T++
Sbjct: 272 LTQAYVSRIVEQILFRAGIRKQKNGAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSR 331

Query: 297 IYTNVNS 303
           IYT+ ++
Sbjct: 332 IYTHFDN 338


>gi|331090315|ref|ZP_08339199.1| hypothetical protein HMPREF1025_02782 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330401450|gb|EGG81035.1| hypothetical protein HMPREF1025_02782 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 322

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 110/249 (44%), Gaps = 21/249 (8%)

Query: 61  QTIRQLSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           Q++R+++  EIR ++S  ++  +  + ++      I SF  +L++     +S +  +  +
Sbjct: 81  QSVRRITTEEIRTYLSDYQKINRCSNVTIDNIRRNISSFFSWLEEEDYILKSPMKRIHKI 140

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K    +   + ++    L DN            + R+ AI+ LLY  G+R+ E ++L  +
Sbjct: 141 KTKTVVKSVITDEGIEKLRDNCA----------EIRDLAIIDLLYSTGIRVGELVNLNIE 190

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD---LNLNIQLPLFRGIRGK 236
           +I  +     + GKGDK R V      +  + EY +    +   L + +  P  R     
Sbjct: 191 DIDLEGRECIVYGKGDKERRVYFDAKAKVHLKEYIEKRKDNSEALFVTLDAPHDR----- 245

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L     +  +RQL R L L      H  R + AT  +  G  +  +Q ILGH ++ TT 
Sbjct: 246 -LKISGVEIRLRQLGRQLKLD-RIHPHKFRRTMATRAIDKGMPIEQVQKILGHSQIDTTM 303

Query: 297 IYTNVNSKN 305
            Y  VN  N
Sbjct: 304 QYAMVNQNN 312


>gi|157265417|ref|YP_001467975.1| phage XerD-like integrase [Thermus phage P74-26]
 gi|156905312|gb|ABU96955.1| phage XerD-like integrase [Thermus phage P74-26]
          Length = 327

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 69/144 (47%), Gaps = 6/144 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           RN++IL L  G GLR +E   L   +I+ D+  +R+ GK     +VP    V +  L Y 
Sbjct: 166 RNASILALALGSGLRAAEICRLQVADILWDEMAVRVHGKTGH-GVVP----VTRETLRYL 220

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
            L   D       P     R +PL   V   +I++  +  G+      H LRH+FAT+ L
Sbjct: 221 RLY-LDRERKATSPYLFVHRNRPLTSEVLSHWIKRQAKVAGINKKVGMHLLRHTFATNYL 279

Query: 275 SNGGDLRSIQSILGHFRLSTTQIY 298
            +GGD  ++Q IL H   + T  Y
Sbjct: 280 KSGGDPFTLQRILRHKSPAMTSRY 303


>gi|312887689|ref|ZP_07747278.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311299784|gb|EFQ76864.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 420

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 130/292 (44%), Gaps = 30/292 (10%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           L+K T+++Y       L FL     +K     I QLSY  I  F    RT K  D     
Sbjct: 125 LAKGTMKNYYTTQDYILQFLK--KSKKPAGWDITQLSYKFIADFELFLRTFKKKDDPQPL 182

Query: 91  SLSGIKSFLKYLKKR---KITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           + +G+   L+  KK     +T E       +++  K  S  R    ++ L +V+   L T
Sbjct: 183 NNNGVMKHLERFKKMINMAVTIEWLDKDPFVKHKLKFTSKERGYLTEEELAVVETKELKT 242

Query: 146 SHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIM---DDQSTLRIQ-GKGDKIRI 199
               K I  R+      L+GC  GL   +A++LT  N+M   D +  L  Q  K  K   
Sbjct: 243 D---KLIYVRD----LFLFGCYTGLSYIDAINLTANNLMIGIDKEHWLLTQRQKSSKPVK 295

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +PLLP   + I  +      D        +FR I  + LN      Y++ L R  G+  +
Sbjct: 296 LPLLPLAAQIIARHR----HDPRAISNGTIFRPISNQKLND-----YLKDLARECGIDKN 346

Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            + H  RH+FAT + L+NG  + ++  +LGH ++STTQIY  V  +   D M
Sbjct: 347 FSFHLARHTFATTVTLANGVPIETVSKMLGHTKISTTQIYAKVVERKVSDDM 398


>gi|212640261|ref|YP_002316781.1| Site-specific recombinase XerC [Anoxybacillus flavithermus WK1]
 gi|212561741|gb|ACJ34796.1| Site-specific recombinase XerC [Anoxybacillus flavithermus WK1]
          Length = 307

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 141/306 (46%), Gaps = 39/306 (12%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ++L E + +LQ    E+G S  T+ SY  D  QFL  L     + +T   IR+     I+
Sbjct: 3   KMLHEYETYLQ----EKGFSPNTVISYLNDVNQFLKDLHLRPGDYVTSADIRKW----IQ 54

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
             ++    + +   ++ R L+ ++SF  +  +     ++ + ++++LK ++      + +
Sbjct: 55  QMLNPSEGKPLAISTINRRLNSLRSFYAWAVEHHKIEQNPMKDIQDLKSADE-----DNE 109

Query: 133 QALTLVDNV---LLHTSH----ETKWIDA-----RNSAILYLLYGCGLRISEALSLTPQN 180
           + + L +     LLH       +++ +D      R+ A++YLL   GLR+ E  +L   +
Sbjct: 110 KIMWLTEEEFEDLLHRMRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTD 169

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-- 238
           +  +   +RI GKG K+R VP + ++  A LE  D   F   +  + P    +   P   
Sbjct: 170 LDLEMKRIRIVGKGMKVRTVP-ISNILLAELE--DWLKFRAEMAKKKP---HVAASPYVF 223

Query: 239 ----NPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRL 292
               +P    R I+++     LP    T H  RH+F   +L +   D+  ++ + GH  +
Sbjct: 224 YSQRSPKFSVRGIQRMIESYSLPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNI 283

Query: 293 STTQIY 298
           +TT  Y
Sbjct: 284 ATTSRY 289


>gi|330880014|gb|EGH14163.1| Orf28 [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 183

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 76/163 (46%), Gaps = 33/163 (20%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAILE 212
           R+ AIL +L   GLR  EA  L   ++ + +    LR+ GKG KIR +PL P   + I  
Sbjct: 18  RDRAILAVLLYHGLRREEAAQLKTGDLQERRGIKHLRVHGKGSKIRFLPLHPVAAERIYA 77

Query: 213 YY------DLCPFDLNLNIQLPLFRGIRGKPLNPG--------VFQRYIRQ---LRRYLG 255
           Y       D  P         PLFR +RG     G        V + Y ++   +  +LG
Sbjct: 78  YLEQDVERDAAPG--------PLFRSLRGTTTGAGITANGIYTVVEAYAKKAGIVVEHLG 129

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +      H LR + AT+ L +  D+  +Q  LGH  +STT++Y
Sbjct: 130 V------HGLRATAATNALEHDADIAKVQMWLGHANISTTRLY 166


>gi|94442276|dbj|BAE93637.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 43/69 (62%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           IR   L+ G  Q+ +++  R  G+      HTLRH FATHLL    D+R++Q +LGH  +
Sbjct: 93  IRRHHLHEGTLQKSVKKAARGCGINKRVGCHTLRHCFATHLLEANHDIRTVQELLGHAHV 152

Query: 293 STTQIYTNV 301
           STT IYT+V
Sbjct: 153 STTMIYTHV 161


>gi|320162129|ref|YP_004175354.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
 gi|319995983|dbj|BAJ64754.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
          Length = 103

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 43/69 (62%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R   L+P   QR ++   + +G+    + HT RH FATHLL  G D+R++Q +LGH  +
Sbjct: 21  VRRHHLDPSGLQRAVKAAAKLVGIDKPVSPHTFRHCFATHLLEAGYDIRTVQELLGHKDV 80

Query: 293 STTQIYTNV 301
            TT IYT+V
Sbjct: 81  KTTMIYTHV 89


>gi|30908730|gb|AAP37597.1| IntI [uncultured bacterium]
          Length = 161

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 8/101 (7%)

Query: 209 AILEYYDLCPFDLNLNIQLPLFR--------GIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           AI   Y   P++       P  +         +R   +      R +++  R  G+    
Sbjct: 61  AIARKYPRAPYEWGWKFVFPSHKLSVDPKTGAVRRHHVYENFVIRGVKEAARAAGIAKHV 120

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + HTLRHSFATHLL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 121 SCHTLRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYTHV 161


>gi|89147490|gb|ABD62605.1| integrase [uncultured bacterium]
          Length = 163

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 41/62 (66%)

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           P  +QR I+       +    T+HTLRHSFATHLL +G DLR+IQ +LGH  + TT IYT
Sbjct: 101 PDSYQRSIKLASTAADITKRVTSHTLRHSFATHLLESGTDLRTIQELLGHSDIKTTMIYT 160

Query: 300 NV 301
           +V
Sbjct: 161 HV 162


>gi|295402694|ref|ZP_06812637.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975266|gb|EFG50901.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
          Length = 284

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 78/150 (52%), Gaps = 7/150 (4%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQ--NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
           + RN A++ LL   GLRISEALSL     N++  +  +R  GKG+K R+V +   V KA 
Sbjct: 127 NKRNYALVTLLAYAGLRISEALSLKMNDFNLVSREIIVR-SGKGNKFRVVFMNDKV-KAA 184

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           L+ +     +  +  +  LF   R K L+     +  ++   ++G  +  T H LRH F 
Sbjct: 185 LQSWLKERKEKGIESEY-LFVSNRNKRLDRTTVNKLFKEYSEHIGKEI--TPHDLRHFFC 241

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +H +S G  +  + +  GH  + TT +YTN
Sbjct: 242 SHAISRGLSVHEVANQAGHSNIHTTLLYTN 271


>gi|153815634|ref|ZP_01968302.1| hypothetical protein RUMTOR_01870 [Ruminococcus torques ATCC 27756]
 gi|317502423|ref|ZP_07960587.1| phage integrase family Site-specific recombinase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|145847065|gb|EDK23983.1| hypothetical protein RUMTOR_01870 [Ruminococcus torques ATCC 27756]
 gi|316896161|gb|EFV18268.1| phage integrase family Site-specific recombinase [Lachnospiraceae
           bacterium 8_1_57FAA]
          Length = 322

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 110/249 (44%), Gaps = 21/249 (8%)

Query: 61  QTIRQLSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           Q++R+++  EIR ++S  ++  +  + ++      I SF  +L++     +S +  +  +
Sbjct: 81  QSVRRITTEEIRTYLSDYQKINRCSNVTIDNIRRNISSFFSWLEEEDYILKSPMKRIHKI 140

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K    +   + ++    L DN            + R+ AI+ LLY  G+R+ E ++L  +
Sbjct: 141 KTKTVVKSVITDEGIEKLRDNCA----------EIRDLAIIDLLYSTGIRVGELVNLNIE 190

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD---LNLNIQLPLFRGIRGK 236
           +I  +     + GKGDK R V      +  + EY +    +   L + +  P  R     
Sbjct: 191 DIDLEGRECIVYGKGDKERRVYFDAKAKVHLKEYIEKRKDNNEALFVTLDAPHDR----- 245

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L     +  +RQL R L L      H  R + AT  +  G  +  +Q ILGH ++ TT 
Sbjct: 246 -LKISGVEIRLRQLGRQLKLD-RIHPHKFRRTMATRAIDKGMPIEQVQKILGHSQIDTTM 303

Query: 297 IYTNVNSKN 305
            Y  VN  N
Sbjct: 304 QYAMVNQNN 312


>gi|223369836|gb|ACM88787.1| integrase [uncultured bacterium]
          Length = 163

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 41/60 (68%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             QR ++Q  R  G+    + HTLRHSFATHLL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 103 ALQRAVKQALRKAGIVKPGSVHTLRHSFATHLLESGYDIRTVQELLGHADVKTTMIYTHV 162


>gi|65317106|ref|ZP_00390065.1| COG0582: Integrase [Bacillus anthracis str. A2012]
          Length = 272

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 13/212 (6%)

Query: 92  LSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           +  ++SF KYL   +  +  NI+N ++ LK+   + +   + +   +++     T     
Sbjct: 46  IKSLRSFYKYLVVEEYVS-VNIMNKIKLLKEDVEVIKTFTDDEVAKMIEAYDFKT----- 99

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
           +++ARN  I+ +    G+R+SE ++L    I D  ++LRI+GKG K R VP+   ++K +
Sbjct: 100 YLNARNKVIIAMFVDTGMRMSELINLQSSWIYD--TSLRIKGKGSKWRHVPMSLMLKKYM 157

Query: 211 LEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIR--QLRRYLGLPLSTTAHTLR 266
           + Y  +    F+         F    GKP+     +  ++   LR  +   +  + HT+R
Sbjct: 158 IRYERIKAKYFEKKALEHDNYFLSRAGKPICTVQIENIVKIAGLRAGVREDIRCSPHTVR 217

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           H      L NG DL S   I GH  +  T+ Y
Sbjct: 218 HYAIQSNLRNGLDLYSCSKIAGHENIQVTKRY 249


>gi|312135654|ref|YP_004002992.1| integrase family protein [Caldicellulosiruptor owensensis OL]
 gi|311775705|gb|ADQ05192.1| integrase family protein [Caldicellulosiruptor owensensis OL]
          Length = 310

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 124/290 (42%), Gaps = 46/290 (15%)

Query: 30  GLSKLTLQSYECDTRQFLIFL--AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           G S+LTL+ YE     F       F+ E+++    +  LS             Q +   +
Sbjct: 26  GRSELTLRDYEYHITHFFKLYPNCFHDEQQLKKCLLEYLS-------------QPVKPAT 72

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV------ 141
               L+ +K+F K+        E NIL      KSN L   L +K+A   + N+      
Sbjct: 73  YNLRLTYLKAFFKW------CVEENIL------KSNPL-EGLPKKKAEGRIVNIDTEILE 119

Query: 142 -LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI--- 197
            LL    +  +   R+ A++ L    G+R  EA SL  ++   D  TL++    D     
Sbjct: 120 KLLKLPDKNTFCGLRDYALILLTLDTGIRPKEAFSLLIEHF--DFKTLQVFIPSDAAKTR 177

Query: 198 --RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
             R++P+LP    A+ +   +       + ++P+F  + G+PL   ++   +    + LG
Sbjct: 178 VSRVLPILPVTANAVKKL--IAVRHPEWDDKVPVFCTVTGRPLTRDIWHDRMEMYSKKLG 235

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           + +    + LRH+FA   L NGG   S+Q  LGH  L  T+ Y +    +
Sbjct: 236 VKIR--PYDLRHTFALLYLKNGGYELSLQKTLGHTTLEMTKRYVHFTQND 283


>gi|330900242|gb|EGH31661.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 299

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 121/290 (41%), Gaps = 37/290 (12%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W  N+   R     T ++Y+ D R F  F+     E+      R ++   + A+ ++   
Sbjct: 32  WFANIRNPR-----TRRAYQADLRDFCSFVGLAGAEEF-----RAVNRAHVLAWRAQLER 81

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLVD 139
           + +   +++R L+ + S   YL        +N L   N     + P+   NE +   L D
Sbjct: 82  RALSGATIRRKLAALASLFDYL------LNNNALAGGNPVHGVARPKVETNEGKTPALGD 135

Query: 140 NV---LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194
           +    LL           R+ AIL +L   GLR  E   L   ++ + +    LRI GKG
Sbjct: 136 DQAKRLLDAPDAESLQGVRDRAILAVLLYQGLRREELSLLQTGDLQERRGVKHLRIHGKG 195

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR--- 251
            KIR +PL P   + I  Y  +   D  L     LFR  RGK    G+  + +  +    
Sbjct: 196 GKIRYLPLHPVAAERIYVYL-VRDGDRALTPG-ALFRSQRGKTSGTGITGKGVYGVVTKW 253

Query: 252 ------RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                 R  GL +    H LR + AT+ L +  D+  +Q  LGH  +STT
Sbjct: 254 ASAAQIRVDGLGV----HGLRATAATNALEHDADIAKVQIWLGHANISTT 299


>gi|149182724|ref|ZP_01861190.1| integrase-recombinase protein [Bacillus sp. SG-1]
 gi|148849584|gb|EDL63768.1| integrase-recombinase protein [Bacillus sp. SG-1]
          Length = 279

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 122/284 (42%), Gaps = 45/284 (15%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+N     G S  T+++YE   R+   +  +  ++ +++   +++S  +++ +I     
Sbjct: 15  WLEN----EGKSANTVRTYE---RELTKYQDWLQQKGLSL---KEVSQEDVQQYIRFLEG 64

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     +  + L  I++F K++K+ +ITT    + M+   K   +   LN  Q  TL+  
Sbjct: 65  QGRSPVTTDKILGAIRTFSKFIKRPEITTG---IEMKTTDKRTEI-ECLNGSQCATLLKK 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           V        +  + RN+AI+Y L   G+R+SE  +L   +I  D+  L ++      R +
Sbjct: 121 V-------KEEGNDRNTAIVYTLLHTGIRVSELCALNQSDIDLDKGRLEVRTSTGHPRTI 173

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF-----QRYIRQLRRYLG 255
           PL    +     YY  C    +              P+   VF     +R   +  +Y+ 
Sbjct: 174 PLSVEAK-----YYLECHLATS--------------PVKDAVFVSRANERLTERAIQYIL 214

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                  H LRH+F   L+  G  +  +  + GH  ++ T+ Y 
Sbjct: 215 KKFDVNPHKLRHTFCQQLVDKGVSIEIVSRLAGHKDINVTKRYA 258


>gi|114762274|ref|ZP_01441732.1| integrase/recombinase [Pelagibaca bermudensis HTCC2601]
 gi|114767558|ref|ZP_01446311.1| integrase/recombinase [Pelagibaca bermudensis HTCC2601]
 gi|114540387|gb|EAU43474.1| integrase/recombinase [Roseovarius sp. HTCC2601]
 gi|114544892|gb|EAU47896.1| integrase/recombinase [Roseovarius sp. HTCC2601]
          Length = 184

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 71/154 (46%), Gaps = 17/154 (11%)

Query: 159 ILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLP---SVRKAILEYY 214
           +L LLY  G RI EAL L P  I  +    +R+ GKG K RI PL P   ++ K +LE  
Sbjct: 2   LLSLLYNSGARIQEALDLCPGAIRFEAPYYVRLYGKGRKERICPLWPETVALMKKLLERQ 61

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNP-GV-FQRYIRQLRRYLGLPL----STTAHTLRHS 268
              P +        +F    G+PL   GV F+            P       T H+ RH+
Sbjct: 62  PRAPDER-------IFVNRYGEPLGASGVRFKLAAYVAAAAKTTPSLRLKHVTPHSFRHA 114

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            A HL++ G D+  I+S LGH  L TT  Y   N
Sbjct: 115 TAVHLVAAGVDITVIRSWLGHVSLDTTNHYAQAN 148


>gi|89147570|gb|ABD62644.1| integrase [uncultured bacterium]
          Length = 163

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 37/50 (74%)

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R  G+    + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 113 REAGITKPASCHTLRHSFATHLLENGSDIRTVQELLGHKDVSTTMIYTHV 162


>gi|331269369|ref|YP_004395861.1| phage integrase family site specific recombinase [Clostridium
           botulinum BKT015925]
 gi|329125919|gb|AEB75864.1| phage integrase family site specific recombinase [Clostridium
           botulinum BKT015925]
          Length = 357

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 132/315 (41%), Gaps = 46/315 (14%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE------KITIQTIRQL 66
           ++LKE +N  +N+ +   L K+T       T  +L  +  Y E       K      + L
Sbjct: 47  KMLKELKNTTKNVPVNNDLIKVTFNQL---TTIYLDHITLYKEYHTVKSYKNCFSKFKDL 103

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSL--SGIKSFLKYLKKRKITTESNILNMRNLKKSN- 123
           +   I+  I K   Q I D+ LK  L  S +K ++  L    I  + ++  +  L   N 
Sbjct: 104 NNKRIKE-IKKHDIQSIVDKLLKEHLKYSTVKKYVGILNMFFIYVKDDLNLIFELPTVNI 162

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            +P+       + L    L     E +  D +   + ++    G+R+ E L LT  +I  
Sbjct: 163 KIPKEKEYSNKIALTKKQLNKLLKELQ--DNKYYMVAFIAANTGMRLGEVLGLTWDSIDF 220

Query: 184 DQSTL-----------RIQGKG-----DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
            +S++           R  G G     +  R +PL P+  K +  Y    P D+N     
Sbjct: 221 KRSSITVNKQWKVLKTRKSGFGSLKSKNSYRTIPLSPNTLKELKNYKKNNPTDINN---- 276

Query: 228 PLFRGIRGKPLNPGVFQRYIR-QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
                 R  P N     +Y+  +L+   G+    T H LRH++AT L+SNG D ++   I
Sbjct: 277 ------RVTPFNASSIDKYLNPKLKELAGI----TMHELRHTYATALISNGVDFKTAAKI 326

Query: 287 LGHFRLSTTQIYTNV 301
           LGH    T +IY++V
Sbjct: 327 LGHTVEMTMKIYSHV 341


>gi|257076019|ref|ZP_05570380.1| phage integrase family protein [Ferroplasma acidarmanus fer1]
          Length = 329

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 116/245 (47%), Gaps = 17/245 (6%)

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           EI +++  R    +  +S++  +S +  + KY+ K  I+ +    ++  LKK       +
Sbjct: 45  EIYSYVEMRLRSGLKKKSVRLEISDLSHWCKYIGK-PISKD----DLPVLKKEPDPDPFI 99

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTL 188
            E + +  +    +    +  W  ARN  ++ +L   G+R  E   L   N+ D   STL
Sbjct: 100 PEPEDIQRMREFCISRKDKYTW--ARNLCMMDMLIATGMRAGE---LIHANLEDYKNSTL 154

Query: 189 RIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
            I+  KG+K R VPL   +   + EY +   +  +      LF    G+  N    ++ I
Sbjct: 155 YIRSEKGEKDRTVPLPGKLTSEVDEYIEKYRYHSD---SRALFTTRTGR-YNYNKLRQLI 210

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           + +  + G+P     H+ RH +AT L+  G D+R +Q ++GH R+ TT  YT++  K  G
Sbjct: 211 KYIGVHSGVP-DIHPHSFRHYYATTLVRLGVDIRRVQILVGHARIETTTRYTHLTQKEVG 269

Query: 308 DWMME 312
           + + E
Sbjct: 270 EAVKE 274


>gi|89147541|gb|ABD62630.1| integrase [uncultured bacterium]
          Length = 163

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 37/50 (74%)

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R  G+    + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 113 REAGITKPASCHTLRHSFATHLLENGSDIRTVQELLGHKDVSTTMIYTHV 162


>gi|83816861|ref|YP_446969.1| phage integrase family site specific recombinase [Salinibacter
           ruber DSM 13855]
 gi|83758255|gb|ABC46367.1| site-specific recombinase, phage integrase family, truncation
           [Salinibacter ruber DSM 13855]
          Length = 191

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 94/191 (49%), Gaps = 20/191 (10%)

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           + + + LPR L E++      + LL   ++  +   R+   + ++   GLR SEA +L P
Sbjct: 1   MARPDKLPRVLTEEET-----DRLLSEPNQRYFGPHRDYLYMRVMLKAGLRASEATALRP 55

Query: 179 QNI--MDDQSTLRIQGKGDKIRIV----PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
           + I  M  +  +R +GKG K R +     LL  ++  +    +  P     +  LP  +G
Sbjct: 56  ERIDLMSGKLMVR-EGKGAKDRTLWIGEELLEELQGWMDRRQEKAP---KADYLLPTSKG 111

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPL--STTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
            +   +     +R +++  R  G+      + HTLRH+FAT L  + G +R +Q  LGH 
Sbjct: 112 TQ---VATSHLRRSVKRYARDAGIEEVERVSPHTLRHTFATRLYRSAGKIRLVQKALGHS 168

Query: 291 RLSTTQIYTNV 301
            LSTT IYT+V
Sbjct: 169 DLSTTMIYTHV 179


>gi|223369838|gb|ACM88788.1| integrase [uncultured bacterium]
          Length = 163

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 41/60 (68%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             QR ++Q  R  G+    + HTLRHSFATHLL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 103 ALQRAVKQALRKAGIVKPGSVHTLRHSFATHLLESGYDIRTVQELLGHADVKTTMIYTHV 162


>gi|223369812|gb|ACM88775.1| integrase [uncultured bacterium]
          Length = 163

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 41/60 (68%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             QR ++Q  R  G+    + HTLRHSFATHLL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 103 ALQRAVKQALRKAGIVKPGSVHTLRHSFATHLLESGYDIRTVQELLGHADVKTTMIYTHV 162


>gi|89147673|gb|ABD62695.1| integrase [uncultured bacterium]
          Length = 166

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 43/63 (68%)

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           N    Q+ +++  R  G+    + HTLRHSFATHLL NG D+R++Q +LGH  +STT IY
Sbjct: 103 NETWLQQEVKRAVRASGINKLASCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIY 162

Query: 299 TNV 301
           T+V
Sbjct: 163 THV 165


>gi|296104775|ref|YP_003614921.1| phage integrase family site-specific recombinase [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295059234|gb|ADF63972.1| phage integrase family site-specific recombinase [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 361

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 99/224 (44%), Gaps = 29/224 (12%)

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKKSNSLPRALNEKQALTL 137
           R + +  R++   L+  ++    LK+    T  N L N+R  K +      L  ++A   
Sbjct: 123 RVKTVTPRTVNLELAYFRAMFNELKRLDDWTAPNPLENVREFKIAEVELAWLTVEEA--- 179

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               LL    ++K  D   +AI+ +    G R  EA SLT + I   + T  I+ KG K 
Sbjct: 180 --TRLLEECEKSKADDL--TAIVKICLATGARWGEAESLTGKQISPGKITF-IKTKGKKN 234

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGL 256
           R VP+         E Y+L P            +    KPL  G +  +   ++R  + L
Sbjct: 235 RAVPISE-------ELYELLP------------KSRTSKPLFTGCYSAFRSAIKRAGIEL 275

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           P    +H LRH+FA+H +  GG++  +Q ILGH  +  T  Y +
Sbjct: 276 PDGQLSHVLRHTFASHFMMGGGNILVLQRILGHTDIKVTMRYAH 319


>gi|154795716|gb|ABS86842.1| integrase/recombinase [Helicobacter cetorum]
          Length = 355

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 130/279 (46%), Gaps = 35/279 (12%)

Query: 48  IFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKR 105
           +FL F Y +  + +++ R LS  ++  F+     Q     S+ + +  ++ F  YL +K+
Sbjct: 77  LFLFFDYFKNNLKLRSFRMLSEEQVINFLF-NLAQNRKPSSMAKYVMYLRQFFDYLDRKK 135

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH---TSHETKWIDARNSAILYL 162
           + + +  + N+   K   SLPR LN+K   + +  +L +   TSHE      RN  +L +
Sbjct: 136 RYSFDFMLKNLAFAKTKESLPRHLNDKDLKSFLKTLLEYKPTTSHE-----KRNKCVLLI 190

Query: 163 LYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDK-----IRIVPLLPSVRKAILEYYD 215
           +   GLR  E L++  ++I  ++   ++ IQGKG K     I+   L PS+   + + Y 
Sbjct: 191 VILGGLRKCEVLNIELKHIQVEEQNYSILIQGKGRKERKAYIKKSLLEPSLNAWLSDDYR 250

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLN--------PGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           L  F+        LF+  + K  N        P +F+  + Q++ Y      T  H  RH
Sbjct: 251 LKYFN-----GAYLFKKDKQKAQNSLTLYNFIPLIFK--LAQIKHYK--QYGTGLHLFRH 301

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           SFAT +     DL      LGH  L +T+IY +   ++ 
Sbjct: 302 SFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHN 340


>gi|327440384|dbj|BAK16749.1| integrase [Solibacillus silvestris StLB046]
          Length = 157

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 9/156 (5%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           +A+   +Y  G RI E + L   +I    +++ +QGKGDK R V         +  Y D 
Sbjct: 3   NALFEFMYSTGCRIGEVVKLDRHDIDFRTNSVIVQGKGDKEREVYFNTRCSIWLKRYLDE 62

Query: 217 CPFDLNLNIQLPLFRGIRGKP---LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
              D       P       KP   ++    +  I+++    G+      H LRHS+ATH+
Sbjct: 63  REDDD------PCLFITDRKPKRRMSIDNLRYIIKRVSNRAGIKKCIHPHQLRHSYATHM 116

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           ++NG  +  IQS+LGH +  TT+IY  ++ K   D+
Sbjct: 117 INNGAPIDVIQSLLGHEKSETTKIYAQLSGKLRQDY 152


>gi|291528623|emb|CBK94209.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 282

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 127/282 (45%), Gaps = 37/282 (13%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R L + ++  Y+     FL ++  + EE         L+  ++R F+  ++   +   +L
Sbjct: 16  RNLKERSINCYKNYVSYFLNYMEKHPEE---------LTCQDVRDFLLAKKDDGLKATTL 66

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
               S I+ F +           N+L++  L    ++PR + E +  T+     L T   
Sbjct: 67  NLYNSAIRFFYR-----------NVLHV--LWDDITVPRMIIEHKLPTI-----LSTDEI 108

Query: 149 TKWIDARNS----AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            + +DA +     A+   +Y  G+R+SE + L   +I      + ++   +++    +L 
Sbjct: 109 DRLLDATDDLKYKAMFATMYSSGMRVSEVIHLHYDDISRTNMQIHVRDTKNRMDRYTILS 168

Query: 205 SVRKAIL-EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
               A+L EY+    F       +       G+ L     ++ IR+     GL    T H
Sbjct: 169 ERNLALLTEYW----FQKGRPKGILFPNQFTGQYLTVSTLEQVIRRSASAAGLS-GVTPH 223

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            LRHSFATHL+  G + R+IQ++LGH    +T++Y +V++K+
Sbjct: 224 CLRHSFATHLMEQGVEQRNIQALLGHRDPKSTEVYLHVSNKS 265


>gi|89147526|gb|ABD62623.1| integrase [uncultured bacterium]
          Length = 162

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 40/64 (62%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           ++P    R +    R  G+    T HT RHSFATHLL +G D+R +QS+LGH  L TT I
Sbjct: 98  IHPSSVDRVVYGAGRRAGIGKRVTCHTFRHSFATHLLESGYDIRQVQSLLGHASLKTTMI 157

Query: 298 YTNV 301
           YT+V
Sbjct: 158 YTHV 161


>gi|78045063|ref|YP_359695.1| phage integrase family site specific recombinase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77997178|gb|ABB16077.1| site-specific recombinase, phage integrase family [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 320

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 115/256 (44%), Gaps = 16/256 (6%)

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           SYT +R  + K  T+K    +  + L+ +K+F  +  K      +    ++  K+  +  
Sbjct: 58  SYTSLRQSVLKYFTEKASPSTRNKRLAHLKAFFSWCAKEGYIPANPAEGIKRAKEDITNI 117

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R ++ ++        LL    +  +   R+  ++ +    G+R  E L +   ++  +  
Sbjct: 118 RHVSLEEV-----KKLLQQPDKKTYTGLRDYCLMLVQIDTGVRPGELLQVRGSDLSLESR 172

Query: 187 TLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
            +RI+ +  K RI   + + P   + I  +  + P     ++  PLF    G  LN   +
Sbjct: 173 EIRIRPEVAKTRIGRTLIITPFTAQQIARFLRIRPEHWGDDV--PLFASENGITLNENDW 230

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            + +RQ  +  G+    T + LRH+FA   L  GGD  S+Q ILGH  L+ T+ Y  ++ 
Sbjct: 231 AKRVRQYCKKAGV--KVTPYGLRHTFAIEFLKAGGDPFSLQRILGHTDLTMTRRYVRLSQ 288

Query: 304 KNGGDWMMEIYDQTHP 319
               D + E++++  P
Sbjct: 289 ----DDIKEVHEKASP 300


>gi|89147536|gb|ABD62628.1| integrase [uncultured bacterium]
 gi|89147547|gb|ABD62633.1| integrase [uncultured bacterium]
 gi|89147555|gb|ABD62637.1| integrase [uncultured bacterium]
 gi|89147594|gb|ABD62656.1| integrase [uncultured bacterium]
 gi|89147620|gb|ABD62669.1| integrase [uncultured bacterium]
          Length = 163

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           P    +R   ++  V Q+ ++   R  G+    + HT RHSFATHLL NG D+R++Q +L
Sbjct: 89  PRSGAVRRHHVDEQVLQKAVKAAIRAAGINKPGSCHTFRHSFATHLLENGYDIRTVQELL 148

Query: 288 GHFRLSTTQIYTNV 301
           GH  + TT IYT+V
Sbjct: 149 GHKDVKTTMIYTHV 162


>gi|77918157|ref|YP_355972.1| integrase [Pelobacter carbinolicus DSM 2380]
 gi|77544240|gb|ABA87802.1| integrase [Pelobacter carbinolicus DSM 2380]
          Length = 330

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 82/181 (45%), Gaps = 37/181 (20%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD----L 216
           LLYG GLR  E + L  Q++  ++  + ++ GKG K R      S++  +  + D    L
Sbjct: 139 LLYGGGLRWMECIRLRVQDLDFERDLIYVRDGKGGKDRTTTFPASIKNGLQTHVDRIGQL 198

Query: 217 CPFDLN-----------LNIQLP----------LFRG-----------IRGKPLNPGVFQ 244
              DL            L+I+ P          +F             IR   +     Q
Sbjct: 199 HEQDLAKGYGSVYLPNALDIKYPNAEKEFAWQYVFPSKRLSTDPRSGKIRRHHVLESGLQ 258

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + ++      G+      HT RHSFATHLL NG ++R +Q ++GH  + TT+IYT+V +K
Sbjct: 259 KAVKVAVNRAGIHKRVGCHTFRHSFATHLLENGVNIRVVQELMGHADVKTTEIYTHVMAK 318

Query: 305 N 305
           N
Sbjct: 319 N 319


>gi|317487235|ref|ZP_07946033.1| phage integrase [Bilophila wadsworthia 3_1_6]
 gi|316921525|gb|EFV42813.1| phage integrase [Bilophila wadsworthia 3_1_6]
          Length = 352

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 140/333 (42%), Gaps = 51/333 (15%)

Query: 6   LPEIVSFELLKERQNW--LQNLEI----ERGLSKLTLQSYEC-------DTRQFLIFL-A 51
           LPE++S   L    +W  L    I    +R L    + +Y         D R  L+FL A
Sbjct: 4   LPEVISNGELPVLDDWEPLSRKRILRYFDRSLEYADVSAYVSAQGELLPDERIILVFLNA 63

Query: 52  FYTEEKITIQ-----TIRQLSYT----------EIRAFISKRRTQKIGDRSLKRSLSGIK 96
            YT+   T++      +  L+Y           ++ ++I + R + +  RS+   +  +K
Sbjct: 64  VYTQSLATVELYCRYVVELLNYARKPSFSVTARDVESYIRQCRMKGLKPRSVNTIIGALK 123

Query: 97  SFLKYLKKRKITT--ESNILNMRNLKKSNSLP----RALNEKQALTLVDNVLLHTSHETK 150
           S+ K L          +  +  R      SLP     +L+E + L L D +  H +    
Sbjct: 124 SYFKRLADTGAIALNPTAFIKKRKDGAGISLPGNLTHSLSESEMLLLFDRLAEHGAPR-- 181

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRK 208
               R+  +L  L+  GLR  EA+SL  +++     Q    + GKG K R + L   + +
Sbjct: 182 ----RDILLLKTLFMTGLRGEEAVSLCWKDVTVWQGQRYFNVLGKGSKERRIYLPDEIDE 237

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS---TTAHTL 265
            + EY  L     N     P+F  +R      G    Y   ++++L   ++    + H  
Sbjct: 238 GLNEYGKLTGTSPNQ----PIFGNLRKPSRRIGRHALY-HMVKKWLTTLMNRPDVSPHWF 292

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           RHS  T+L S G  L SIQ++ GH  + TT +Y
Sbjct: 293 RHSCFTYLASKGVRLESIQALAGHASIDTTMLY 325


>gi|306818222|ref|ZP_07451953.1| phage integrase [Mobiluncus mulieris ATCC 35239]
 gi|304649186|gb|EFM46480.1| phage integrase [Mobiluncus mulieris ATCC 35239]
          Length = 266

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 94/218 (43%), Gaps = 36/218 (16%)

Query: 89  KRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           +RS  G+ S F KYL + +I  +   L +  +   + +PR   E      + N       
Sbjct: 67  RRSAQGVASTFFKYLVREEIVKKDPTLGLAPVHVPDGVPRPAPEAAVRHALANA------ 120

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
                  R + ++     CGLR  E   L   +   D   LR++GKG ++RI+P+     
Sbjct: 121 -----PDRTALMVRFAAFCGLRACEIAKLRGSDW--DGELLRVKGKGGRVRIIPVQ---D 170

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLG--LPLSTTAHT 264
           + ++ + + CP  L        F G I G      +  +Y  +L   LG  LP   T H 
Sbjct: 171 RTLIYHLEQCPGWL--------FPGRIDGH-----LSAQYTAKL---LGEYLPAGVTGHA 214

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           LRH F T       DL ++ +++GH +  TT+ Y  ++
Sbjct: 215 LRHRFGTVAYRATHDLLAVGAVMGHAKTDTTKRYIQLD 252


>gi|228950100|ref|ZP_04112285.1| Integrase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228809627|gb|EEM56063.1| Integrase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 380

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 144/344 (41%), Gaps = 58/344 (16%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIF-----LAFYTEEKI 58
           NN+P  V           ++ LE++  LS  TL +Y  +  +F  +     LA      +
Sbjct: 37  NNMPWYV-----------IEYLEMKTALSPATLYAYITEFEKFFKWIILKRLAVVNGNVV 85

Query: 59  T------IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
           T      I+T++ L   ++  F    + + I  R++ R+ S +KS  KYL +        
Sbjct: 86  TNITDIPIETLQTLPLNDVNRFHMYLQGEGIETRAINRTFSALKSLFKYLVQNSEDEHGK 145

Query: 113 ILNMRNLKKSNSLPRALNEKQA-LTLVDNVLLHTSHETKWI------------------- 152
               RN+ +   L +   +  A    V N++ + + +  ++                   
Sbjct: 146 SYLSRNVMEKIELHKEKVDAAARADEVANIIFNDNEDVAFLRFLINDYATILKETSTRKY 205

Query: 153 ------DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                   R+ A++ L+ G GLR+SE  SLT  +I   Q T+++  KG+K   +    S 
Sbjct: 206 NYFLRDKERDIALISLILGTGLRVSELASLTLSSINFRQGTIKVTRKGNKKSSILATKSC 265

Query: 207 RKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
              + EY        +CP + ++ + +  ++G +   L+    Q  + +           
Sbjct: 266 LDDVQEYMKVRLEKYMCPPEEDI-LFVTRYQG-KYTQLSVRAIQNLVEKYSS--AFDEKR 321

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + H LRH++AT+      DL  ++  LGH  +  T IYTN+N++
Sbjct: 322 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNE 365


>gi|120554184|ref|YP_958535.1| phage integrase family protein [Marinobacter aquaeolei VT8]
 gi|120324033|gb|ABM18348.1| phage integrase family protein [Marinobacter aquaeolei VT8]
          Length = 246

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 96/205 (46%), Gaps = 28/205 (13%)

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           L+  +++P+ L + + L L+++     SH        +  IL L++  G R+SE L++TP
Sbjct: 51  LESLDTMPKYLLKPEILGLLES----ESHPM------HRLILDLMWCTGARVSEVLAITP 100

Query: 179 QNIMDDQSTLRI------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
            + +DD     +      QG G      P   S++++   +  +   D    IQ  L+ G
Sbjct: 101 ASFIDDGYDFGVMLKTLKQGAGR-----PSKRSLQRSPKRFIPILDRDFQTRIQSYLWMG 155

Query: 233 IRGK-----PLNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
              K     P+        I +L   +G   P     HT RHSFA HLL +G  L+ +  
Sbjct: 156 KFRKDERIFPITRQAVSANIDRLIDQVGGEPPFKIGCHTFRHSFAVHLLLHGRPLKFVSQ 215

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWM 310
           +LGH  + + ++YTNV + +G  ++
Sbjct: 216 LLGHRSVESPEVYTNVLTFDGAHFL 240


>gi|261420932|ref|YP_003254613.1| integrase [Geobacillus sp. Y412MC61]
 gi|319768580|ref|YP_004134080.1| integrase family protein [Geobacillus sp. Y412MC52]
 gi|261377390|gb|ACX80131.1| integrase family protein [Geobacillus sp. Y412MC61]
 gi|317113446|gb|ADU95937.1| integrase family protein [Geobacillus sp. Y412MC52]
          Length = 304

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 136/301 (45%), Gaps = 31/301 (10%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +L+E +++L+     +G S  T+ SY  D  QFL  L    ++ +T   IR+     I+ 
Sbjct: 1   MLREYEDYLRG----KGYSPNTVLSYLNDVNQFLKDLNLRPDDYVTSADIRKW----IQQ 52

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA---LN 130
            +     +     ++ R L+ +++F  +  ++    ++ +  + +LK ++        L 
Sbjct: 53  MLHPDEGKPFAVSTINRRLNALRNFYGWAVEQGYVEQNPMNGIADLKTADEDQETIMWLT 112

Query: 131 EKQALTLVDNVLLHTSHETKWIDA-----RNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           E++   L+  +    +H ++ +D      R+ AI+YL    GLR+ E  +L   +I  + 
Sbjct: 113 EEEFEDLLHRMRKMLAH-SRGVDPEEKYRRDRAIVYLFVYAGLRVEELSNLKLTDIDLEM 171

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL------N 239
             LRI GKG K+R VP+   +   + E  D   F   ++ + P    +   P       +
Sbjct: 172 KRLRIVGKGMKVRTVPISNIL---LAELQDWLAFRAEMSKKKP---HVAASPYVFYSQRS 225

Query: 240 PGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLSTTQI 297
           P    R I+++     LP    T H  RH+F   +L +   D+  ++ + GH  ++TT  
Sbjct: 226 PKFSVRGIQRMVEGYSLPGKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSHIATTSR 285

Query: 298 Y 298
           Y
Sbjct: 286 Y 286


>gi|295696553|ref|YP_003589791.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295412155|gb|ADG06647.1| integrase family protein [Bacillus tusciae DSM 2912]
          Length = 305

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 123/279 (44%), Gaps = 22/279 (7%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G S LTL+ Y           AF+ E   T   +  L    + A  +  R +     +L+
Sbjct: 21  GRSPLTLRDYHNHVP------AFFQEHPDTWPDVHALKRAVV-AHFAGLRERSATHYNLR 73

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R    +K+F  +  + +   ++ +  +   +K++  PR L+++   TL    LL    ++
Sbjct: 74  REY--LKAFFSWCVREEYLPKNPVDGIPK-RKNDGTPRNLDDQ---TL--KRLLELPDKS 125

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSV 206
            +   R+ A++ L    G+R  EAL L P +      + +      K    R V + P  
Sbjct: 126 TYAGVRDHALVLLQLDTGIRPGEALQLLPAHFNLGALEVTVPSATAKTRTARTVVMSPQT 185

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            KAI     + P D   ++  P+F    G+P++  ++ + + Q  R LG+ +  T + LR
Sbjct: 186 AKAIRRLLSVRPADWTDDV--PVFATYSGRPMDRNMWGKRLAQYGRTLGVRI--TPYMLR 241

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           HS A   L  GG + ++Q  LGH  L  T+ Y ++   +
Sbjct: 242 HSSALMFLRGGGHVFALQRQLGHTSLVMTKRYVHLADSD 280


>gi|89147665|gb|ABD62691.1| integrase [uncultured bacterium]
          Length = 163

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 40/59 (67%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            Q  ++   R  G+    T H+LRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 104 LQLAVKAAARASGICKPATCHSLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|223369852|gb|ACM88795.1| integrase [uncultured bacterium]
          Length = 163

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 41/60 (68%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             QR ++Q  R  G+    + HTLRHSFATHLL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 103 ALQRAVKQALRKAGIVKPGSVHTLRHSFATHLLESGYDIRTVQELLGHADVKTTMIYTHV 162


>gi|170289797|ref|YP_001736613.1| integrase family protein [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170173877|gb|ACB06930.1| integrase family protein [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 262

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 84/187 (44%), Gaps = 26/187 (13%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHET-KWIDARNS---AILYLLYGCGLRISEALS 175
           +++ SL + +        VD  L+ T  E  K I+       A + +L   G+R+ E +S
Sbjct: 78  EEARSLAKEIRSPAPPPKVDEDLIRTYGEIEKLIEGAKPIVRAAIMMLAETGMRVGELVS 137

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           L   ++        ++GKGDK R V       + + E                  RG R 
Sbjct: 138 LKWDDLDLGNRRALVKGKGDKSRYVYFTERTERFLRELER---------------RGSRV 182

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            P++    +R++ QL       L T  H +RH+FA   LS+GG  R +Q ILGH  L TT
Sbjct: 183 FPVSDRTVRRWVSQL-------LKTHPHAVRHAFAVWFLSSGGSPRVLQHILGHSNLRTT 235

Query: 296 QIYTNVN 302
           +IY +++
Sbjct: 236 EIYLDIS 242


>gi|116621638|ref|YP_823794.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116224800|gb|ABJ83509.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 710

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 130/299 (43%), Gaps = 19/299 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E++     WL ++    GLSK TL+      R F+ +L     ++    ++ ++   +I 
Sbjct: 400 EVIDGYGRWLVDIH---GLSKGTLRKNGDAARVFVQWLG----DRANRDSLSRIGLADID 452

Query: 73  AFISKRRTQKIGDRSLKRSLS-GIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRAL 129
            ++S R       R+ +  +S  ++SFL+YL   K   +  S +++   + K   +PRA 
Sbjct: 453 QYLSWRMPGL--RRATRHGVSQCLRSFLRYLHAEKFVAKDLSPVVSGPIMYKFEDIPRAF 510

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            E Q   L++     T  +      R+ AIL LL   GLR  E + L   +I      LR
Sbjct: 511 TEPQVKALLET----TRQDKTPTGLRDHAILMLLSTYGLRAGEVVRLRLDDIDWRADRLR 566

Query: 190 I-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           + Q K      +PLLP V +A+L Y        ++       R   G     G     I+
Sbjct: 567 VRQSKSGAGSFLPLLPPVGEALLNYLRRGRPQTDIREVFLRVRAPHGAFPWGGSLHTIIQ 626

Query: 249 QLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +  +  G+ +     AH  R + A  LL     L+SI  +LGH    +T+IY  + +++
Sbjct: 627 RRLKQAGIQVKGRHGAHAFRFARAGSLLEADVPLKSIGDLLGHRSAESTEIYLRLATED 685


>gi|282899197|ref|ZP_06307172.1| Phage integrase protein [Cylindrospermopsis raciborskii CS-505]
 gi|281195912|gb|EFA70834.1| Phage integrase protein [Cylindrospermopsis raciborskii CS-505]
          Length = 158

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 77/149 (51%), Gaps = 13/149 (8%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAI 210
           + RN  IL LL+ CGLR+ E   L   +I D+ ST  + I GKG+K R + ++P +  A 
Sbjct: 7   NTRNRLILQLLFFCGLRVGELTILLWADIKDNGSTAYVHITGKGNKQRTL-IIPPLLWAS 65

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           L+ +           + P+F+  +G K L        +R   + +G+  S + H LRH+ 
Sbjct: 66  LKSHKTTN-------ESPVFKSRKGGKNLTQKAVWDIVRTASQRIGI--SASPHWLRHTH 116

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           A+  L NG D+  + + LGH  ++TT  Y
Sbjct: 117 ASLALHNGADINQVSTSLGHSSVATTTKY 145


>gi|149915553|ref|ZP_01904079.1| Integrase [Roseobacter sp. AzwK-3b]
 gi|149810445|gb|EDM70288.1| Integrase [Roseobacter sp. AzwK-3b]
          Length = 188

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 13/158 (8%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-------IQGKGDKIRIVPLLPSVR 207
           R+  I+   +  GLR  E  +L   ++ D+   +R       +Q KG K R V +   +R
Sbjct: 27  RDETIVLFSFYAGLRAKEIAALKRGDVFDEAGAVREQFILSAVQSKGGKTRTVYVNQRLR 86

Query: 208 KAILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           +A+ EY      DLNL +   PLF   +G   +     +    + R +GL    ++H+ R
Sbjct: 87  RALAEY----AADLNLHDPNRPLFESQKGGHFSANTMCQLFLDIYRAVGLK-DASSHSGR 141

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            ++ T L + G  +R +  + GH  +STTQ Y +VN++
Sbjct: 142 RTYITRLANKGVGVRLLAELAGHSHISTTQRYIDVNAE 179


>gi|186683565|ref|YP_001866761.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186466017|gb|ACC81818.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
          Length = 193

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 9/159 (5%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
            RN A++ L++  GLR+SEA  L    I   D+     + KG    + PL     +A+ +
Sbjct: 36  VRNYALVLLIFRHGLRVSEACDLRWDAISFLDEEIFITRKKGSDSGVHPLPVDEIEALKQ 95

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
             +L   ++  N    +F G RG+ L P   QR + +L     L +    H LRH+   +
Sbjct: 96  LKEL---NIGGNY---VFIGERGERLTPAAVQRLLTRLGEVAELNIKIHPHQLRHACGYY 149

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK--NGGDW 309
           L++ G   R IQ  LGH  +  T+ YT VNSK  +G  W
Sbjct: 150 LVNEGHSTRFIQEFLGHRDIRHTEKYTKVNSKRFSGIKW 188


>gi|71733392|ref|YP_273045.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71553945|gb|AAZ33156.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 318

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 120/289 (41%), Gaps = 29/289 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W  N+   R     T ++Y+ D R+F  F+     E+      R ++   + A+ ++   
Sbjct: 31  WFANIRNPR-----TRRAYQADLREFCSFVDLAGAEEF-----RVVNRAHVLAWRAQLER 80

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN-LKKSNSLPRALNEKQALTLVD 139
           + +   +++R L+ + S   YL       ++N L   N +      P   NE +   L  
Sbjct: 81  RALSGATIRRKLATLASPFDYL------LDNNALAGGNQVHGVARPPVETNEGKTPALGG 134

Query: 140 NV---LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194
           +    LL    +      R+ AIL +L   GLR  E   L   ++ + +    LRI GKG
Sbjct: 135 DQTKRLLDAPDDESLQGVRDRAILAVLLYQGLRREELSLLQTGDLQERRGVKHLRIHGKG 194

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            KIR +PL P   + I  Y  L            LFR +RGK    G+  + +  +    
Sbjct: 195 GKIRYLPLHPVAAERIYVY--LVRDGDRAQTPGALFRSLRGKTSGTGITGKGVYGVVSKW 252

Query: 255 GLPL-----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                        H LR + AT+ L +  D+  +Q  LGH  +STT++Y
Sbjct: 253 ASAAQIHVDGLGVHGLRATAATNALEHDADIAKVQIWLGHANISTTRLY 301


>gi|89147402|gb|ABD62561.1| integrase [uncultured bacterium]
          Length = 163

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 42/59 (71%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            Q+ ++   R  GL    + HTLRHSFATHLL++G D+R++Q +LGH  +STT IYT+V
Sbjct: 104 LQKAVKDAIRRAGLQKRGSCHTLRHSFATHLLADGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|221642149|ref|YP_002533236.1| integrase/recombinase, putative [Bacillus cereus Q1]
 gi|221243084|gb|ACM15793.1| integrase/recombinase, putative [Bacillus cereus Q1]
          Length = 347

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 124/287 (43%), Gaps = 41/287 (14%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T + Y  D   FL ++      K +I TI++LS+ E+  +  +  ++K    +L+R 
Sbjct: 62  SERTKKLYLHDLSHFLRYI------KESIGTIKELSHNEVEIYFYQL-SKKYAASTLRRK 114

Query: 92  LSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
            + ++ FLKY+      ++  S+ L   ++KK   + R L  ++      N +L T  +T
Sbjct: 115 KTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLFPEEV-----NEILDTLKKT 169

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPS 205
            +      ++ +LL   GLRI E  +    ++    S     LR+ GKG+K R V +   
Sbjct: 170 NFF---MYSLFFLLTTTGLRIEEVANAKWADLAFHPSLNVYLLRVVGKGNKTREVRIFED 226

Query: 206 VRKAILEYYDLCPF--------DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           V        DLC          +L+ +          G         +Y+ +      LP
Sbjct: 227 VLN------DLCRLRQLRKQTSELDASSSSAFLPKADGSHYRADYLSKYVAEKIEETNLP 280

Query: 258 L------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                    T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y
Sbjct: 281 FLRYRKDRITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERY 327


>gi|160880332|ref|YP_001559300.1| integrase family protein [Clostridium phytofermentans ISDg]
 gi|160428998|gb|ABX42561.1| integrase family protein [Clostridium phytofermentans ISDg]
          Length = 350

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 135/313 (43%), Gaps = 34/313 (10%)

Query: 13  ELLKERQNWLQNL--EIERGLSKLTLQSYECDTRQFLIFL-----AFYTE--EKITIQTI 63
           ELL +   WL++    IE+     T  +Y  D + FL FL     +F  +  ++I    +
Sbjct: 20  ELLTQLPPWLKDFFRGIEQSTEPRTRIAYAIDLQTFLEFLQSQNPSFEGKPIKEIPRDVL 79

Query: 64  RQLSYTEIRAFISKRRTQKIG--------DRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
             L  T+I  ++   +  K          DR++KR LS +++   Y  K KI  E+ +L 
Sbjct: 80  TSLKSTDIEEYLEHLKYYKNAEGKEFINNDRAMKRKLSTLRTMYSYYHKNKIIDENPVLQ 139

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNV-----LLHTS---HETKWIDARNSAILYLLYGCG 167
           +   K        L   +   L+D V     L  T    HE   +  R+ A++ LL G G
Sbjct: 140 VDMPKIHEKAIVRLEINEVAELLDVVETGSKLTDTQKVFHEKNKV--RDLALMTLLLGTG 197

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD----LCPFDLNL 223
           +R+SE + L   ++  D   +++  KG     V     VR A+L Y D    +   D + 
Sbjct: 198 IRVSECVGLDLTDVDFDNDRIKVVRKGGYESYVYFGEEVRDALLSYMDERDQIIAVDGHE 257

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
           N    LF   R   ++    +  +++  + +      T H LR ++ T L    GD+  +
Sbjct: 258 N---ALFLSSRRSRISVRNVEVLVKKYAQTVTTLKKITPHKLRSTYGTSLYQETGDIYLV 314

Query: 284 QSILGHFRLSTTQ 296
             +LGH  ++TT+
Sbjct: 315 ADVLGHRDVNTTK 327


>gi|312621873|ref|YP_004023486.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202340|gb|ADQ45667.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 310

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 123/290 (42%), Gaps = 46/290 (15%)

Query: 30  GLSKLTLQSYECDTRQFLIFL--AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           G S+LTL+ YE     F       F+ E+++       LS             Q I   +
Sbjct: 26  GRSELTLRDYEYHVTHFFDLYPNCFHDEQQLKKCLYEYLS-------------QPIKPAT 72

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV------ 141
               L+ +K+F K+        E NIL      KSN L   L +K+A   + N+      
Sbjct: 73  YNLRLTYLKAFFKW------CVEENIL------KSNPL-EGLPKKKAEGRIVNIDTEILE 119

Query: 142 -LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI--- 197
            LL    +  +   R+ A++ L    G+R  EA SL  ++   D  TL++    D     
Sbjct: 120 KLLKLPDKNTFCGLRDYALILLTLDTGIRPKEAFSLLIEHF--DFKTLQVFIPSDAAKTR 177

Query: 198 --RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
             R++P+LP    A+ +   +       + ++P+F  + G+PL   ++   +    + LG
Sbjct: 178 VSRVLPILPVTANAVKKL--IAVRHPEWDEKVPVFCTVTGRPLTRDIWNDRMEMYSKKLG 235

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           + +    + LRH+FA   L NGG   S+Q  LGH  L  T+ Y +    +
Sbjct: 236 VKIR--PYDLRHTFALLYLKNGGYELSLQKTLGHTTLEMTKRYVHFTQND 283


>gi|75763022|ref|ZP_00742813.1| Probable integrase/recombinase ripX [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228967124|ref|ZP_04128160.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|74489484|gb|EAO52909.1| Probable integrase/recombinase ripX [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228792493|gb|EEM40059.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 53

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 40/55 (72%), Gaps = 4/55 (7%)

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           +RHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + ++Y Q HP
Sbjct: 1   MRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKDVYKQFHP 51


>gi|167461250|ref|ZP_02326339.1| phage integrase family protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322382057|ref|ZP_08055993.1| site-specific tyrosine recombinase XerC-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321153972|gb|EFX46316.1| site-specific tyrosine recombinase XerC-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 301

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 129/299 (43%), Gaps = 36/299 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFL--AFYTEEKITIQTIRQLSYTEIRAFIS 76
           Q+++  L     L+  TL+ Y  D + F+ +   A + EE++  +     + T  R   +
Sbjct: 16  QDFIHALTTHEDLNPKTLKEYASDLKHFIGWFETADHQEEEVLFRIEDVATPTLTRYRET 75

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-PRALNEKQAL 135
            ++  K+   ++ R L  +K F ++       +ESN      L     + PR + +K+  
Sbjct: 76  AQKVMKLKPATINRRLITLKRFFEW-----AVSESNPSKPVKLVPEEKISPRQMTDKEEA 130

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM----DDQSTLRIQ 191
            L+      + H       R+  IL L++  GLR  E   L P +I       Q T+R  
Sbjct: 131 ALIAA----SEHGGSL---RDQTILILMFHTGLRTMEVCDLAPGDIQIGKRRGQLTVR-S 182

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNP----GVFQRY 246
           GK +K R VPL  + R A+ +Y  + P D        LF   + G  L       + Q+Y
Sbjct: 183 GKRNKQREVPLNATCRAALEKYLAVHPSDSPY-----LFPSEKTGDRLTERALRHLIQKY 237

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           ++   R  GL    +AH LRH F  ++++    L  +  I+GH  L TT IY      +
Sbjct: 238 MKSA-RLKGL----SAHDLRHRFG-YVMAENTPLHRLAQIMGHDSLDTTMIYVKATRSD 290


>gi|299538026|ref|ZP_07051312.1| hypothetical protein BFZC1_18510 [Lysinibacillus fusiformis ZC1]
 gi|298726608|gb|EFI67197.1| hypothetical protein BFZC1_18510 [Lysinibacillus fusiformis ZC1]
          Length = 293

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 95/219 (43%), Gaps = 15/219 (6%)

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
            D ++K  L  + SF  +    ++  +S I       K+  LPR L +     L  + L 
Sbjct: 75  SDATVKLRLCILSSFYNFCVIEELLEKSPI-------KTRWLPR-LPQPIPQYLGKSELA 126

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
            T  +T+    RN  ++  +   G R+SE + L   ++  +  T R+ GKG KIR V   
Sbjct: 127 KTRKQTEESTLRNRVLIEFMLTSGCRVSEIVGLNQSDVDLENRTARVIGKGKKIREVHF- 185

Query: 204 PSVRKAIL-EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            S + AIL E Y        +     LF    GK L     Q  +  +     L      
Sbjct: 186 -SEKCAILMERY----LTDEVKKCEALFVTANGKRLGVRGVQYIVHDIGEEAQLDKRLFP 240

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H LRH+FAT LLS G +L  I   LGH  + TTQIY  +
Sbjct: 241 HRLRHTFATELLSKGAELSFIADELGHTDIRTTQIYARL 279


>gi|89147412|gb|ABD62566.1| integrase [uncultured bacterium]
          Length = 163

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 39/59 (66%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            Q  +++  R  G     T HTLRHSFATHLL NG D+R++Q +LGH  L TT IYT+V
Sbjct: 104 LQMAMKRAVRAWGGAKPATCHTLRHSFATHLLENGYDIRTVQELLGHADLQTTMIYTHV 162


>gi|302349105|ref|YP_003816743.1| Tyrosine recombinase XerC/XerD [Acidilobus saccharovorans 345-15]
 gi|302329517|gb|ADL19712.1| Tyrosine recombinase XerC/XerD [Acidilobus saccharovorans 345-15]
          Length = 324

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 138/303 (45%), Gaps = 47/303 (15%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           PE++S  +    +++L  LE   G SKLTL+SY    + F   +          + + QL
Sbjct: 11  PEVLSKSVADAVESFLSALEAS-GASKLTLKSYRAALQSFASHVG-------PSRPVSQL 62

Query: 67  SYTEIRAFISKRRTQ-KIGDRSLKRSLSG------IKSFLKYLKKRKITTESNILNMRNL 119
           S  +  +++S+ R++  +G R  + S +       ++ FL++L    +  E         
Sbjct: 63  SQADYLSWLSEMRSKGPVGPRGGRWSSTVHYYTIFVRRFLQWLGISGLPAEP-------- 114

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           ++ +    AL+ K+   ++          +K  D  +  IL L+   GLR  E ++LT  
Sbjct: 115 QRRSEFSGALSWKEVEAMM----------SKARDLYDLLILSLMAESGLRAREVVNLTWG 164

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           +I   +   R++GK  K R+V +L  V +++L    L P   N  +    ++ I  +   
Sbjct: 165 DIDLAKGEARVRGKYGKERLV-VLGQVARSVLSV--LPPGGPNERVVKLSYQAIYDR--- 218

Query: 240 PGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                  ++ L R  G+ +S    H LRH+FAT  L  G  L  +Q +LGH  +  TQ+Y
Sbjct: 219 -------VKSLARRAGIDVSKVRPHVLRHTFATEALRRGMSLPVLQRLLGHSDIRITQVY 271

Query: 299 TNV 301
            ++
Sbjct: 272 LHL 274


>gi|295105592|emb|CBL03136.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 398

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 138/313 (44%), Gaps = 52/313 (16%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFL-----------------------AFYTEEK 57
           +++ LE+  G S  T  SY CD R F  F+                       AF+    
Sbjct: 26  YVRYLEVIAGKSANTAFSYYCDLRSFSRFMKRRRGLVATDAEFKEIDPKGLDTAFWG--S 83

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNM 116
           IT + I +  Y     F+++    K    S  R L+ +  F  YL  +    +E     +
Sbjct: 84  ITKEDIYEYLY-----FLNRECGNK--KSSTARRLASLHGFYDYLVNQVNRLSEDPTAAI 136

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           R  K+   LP+ L  +Q+++L     L ++        R+  ++ L   CG+R++E + +
Sbjct: 137 RPPKQDKVLPKYLTAEQSISL-----LESTQTQSDFPERDYCMVVLFLNCGMRLAELVGM 191

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-------DLCPFDLNLNIQLPL 229
              +I  +Q  +R+ GKG K R+V L  +  +A+  Y         L P +  + I    
Sbjct: 192 DLGDIDLEQRQIRLFGKGHKERMVYLNDACVEALQLYLRKRNTMEGLSPKEKAVFITR-- 249

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG-DLRSIQSILG 288
              +R + ++    ++ I    +  GL   +T H LRH+ AT +   G  D+ +++ +LG
Sbjct: 250 ---MRKERISNRRVEQLISGAMKAAGLKGFST-HKLRHTAATLMYQTGNVDILTLKQLLG 305

Query: 289 HFRLSTTQIYTNV 301
           H  + TTQIYT++
Sbjct: 306 HSSVGTTQIYTHL 318


>gi|38637705|ref|NP_942679.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|38637800|ref|NP_942774.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527043|gb|AAP85793.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527138|gb|AAP85888.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 332

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 119/297 (40%), Gaps = 40/297 (13%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQ 81
           Q L  +R  S  T+ SY    RQFL F       + +     ++    I AF+    + Q
Sbjct: 17  QRLMQQRQASPHTISSYRDTFRQFLKFAQQRLHRQPSRMNFEEIDAPLIVAFLDDLEQRQ 76

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNI---LNMRNLKKSNSLPRALNEKQALTLV 138
            +  RS    L+ I SF +Y         + I   L + + + + +L + L  ++     
Sbjct: 77  GVSVRSRNLRLTAIHSFFRYAALETPAHSAQIQRVLAIPSKRFTRTLVQFLTRQEV---- 132

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQGKGDKI 197
            + LL    +  W   R+ A L +    GLR+SE   L   + ++   + +R+ GKG K 
Sbjct: 133 -DALLAAPDQRTWAGRRDHAFLLVAVQTGLRLSEMTGLKRDDLVLGTGAHVRVIGKGRKE 191

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR----------------GKPLNPG 241
           R  P++ S   A+L+ +   P     ++  P  RG R                   + P 
Sbjct: 192 RCTPIVRST-LAVLKAWLREPQRGEDDVLFPSARGERLTVHGVQYLLNKHRETASKICPS 250

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           + Q+ +             T H LRH+ A  LL  G D   I   LGH  + TTQIY
Sbjct: 251 LKQKQV-------------TVHRLRHTMAMDLLQAGVDRSVIALWLGHESVETTQIY 294


>gi|218662495|ref|ZP_03518425.1| site-specific tyrosine recombinase XerD [Rhizobium etli IE4771]
          Length = 140

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 46/68 (67%), Gaps = 5/68 (7%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H +RH+FA+HLL+NG DLR +Q +LGH  +STTQIYT+V  +      ++   QTH  
Sbjct: 77  SPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER-----LQQLVQTHHP 131

Query: 321 ITQKDKKN 328
           + ++ KK+
Sbjct: 132 LAKQAKKH 139


>gi|30908734|gb|AAP37599.1| IntI [uncultured bacterium]
          Length = 161

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 43/64 (67%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           ++  + QR +    R  GL    T+HT RHSFATHLL++G D+R++Q +LGH  + TT I
Sbjct: 98  VDESLVQRAVAVAVRQAGLTKRVTSHTFRHSFATHLLADGYDIRTVQELLGHSDVRTTMI 157

Query: 298 YTNV 301
           YT+V
Sbjct: 158 YTHV 161


>gi|89147522|gb|ABD62621.1| integrase [uncultured bacterium]
          Length = 163

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 43/69 (62%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R   ++    QR ++     +GL    + H LRHSFATHLL  G D+R++Q +LGH  +
Sbjct: 94  VRRHHIHENALQRAVKDASVQVGLTKQMSCHVLRHSFATHLLEGGYDIRTVQELLGHADV 153

Query: 293 STTQIYTNV 301
           STT IYT+V
Sbjct: 154 STTMIYTHV 162


>gi|116751213|ref|YP_847900.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
 gi|116700277|gb|ABK19465.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
          Length = 304

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 97/215 (45%), Gaps = 5/215 (2%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           SL R  + +++F  +  +  +  ++   ++R  +    LP  L   +   L+  +     
Sbjct: 83  SLHRMKAAVRAFFAWAVEVGVVDDNPARSIRMQRLPRKLPVFLTTAEKKRLLKEL----K 138

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
             T +   R+ A++ +L G G+R+ E  +L   +I  D   LR++ KG+  ++  +   +
Sbjct: 139 GRTDFSALRDRAMIEVLLGTGIRLGELAALDMDDIDLDAKHLRVRAKGNVPQVKFIKTDL 198

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           R  +  Y           ++        G+     +  R    LR+  G+    T H LR
Sbjct: 199 RTLLRRYLAERRRHGRPEMEALFLSNRDGRLCQRQIANRLAHWLRKA-GIEKELTPHGLR 257

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H+FATHL     DL  +Q  LGH  +STTQIYT++
Sbjct: 258 HTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHL 292


>gi|20804053|emb|CAD31630.1| HYPOTHETICAL INTEGRASE/RECOMBINASE PROTEIN [Mesorhizobium loti R7A]
          Length = 333

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 122/296 (41%), Gaps = 21/296 (7%)

Query: 19  QNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           + W  + L   RG+S  T+ SY    R    F         +  T+R L    I AF+  
Sbjct: 12  ERWFTDRLMRHRGVSSNTIASYRDTFRLLFAFAQTRLGRSPSQLTLRDLDAPFIGAFLED 71

Query: 78  R---RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
               R+  +  R+L+  L+ I+SF +Y    +    + I  +  +       R L   Q 
Sbjct: 72  LETLRSASVRTRNLR--LTAIRSFFRYASFEEPAHSAQIHRVLAIPSKRCDKRQL---QF 126

Query: 135 LTLVD-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQG 192
           LT  +   +L     + W+  R+  +L L    GLR+SE + L   ++M    + +R  G
Sbjct: 127 LTRPEIEAILACPDRSTWLGRRDHTLLLLAAQTGLRVSEIIDLDRHSVMLGHGAHVRCVG 186

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP----GVFQRYIR 248
           KG K R  PL    ++A+  + +    +        LF  + G  L+      +  +Y+ 
Sbjct: 187 KGRKERSTPLTKVAQQALRGWLN----EPRKRGATALFPNMHGSKLSADGVQALLNKYVA 242

Query: 249 QLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           + R +     S   + H LRHS A  LL  G D   I   LGH  + TT  Y + +
Sbjct: 243 KAREHCVTLRSKRVSPHVLRHSAAMELLQAGVDCSVIALWLGHEAMETTLTYLHAH 298


>gi|298388138|ref|ZP_06997681.1| tyrosine recombinase [Bacteroides sp. 1_1_14]
 gi|298259111|gb|EFI01992.1| tyrosine recombinase [Bacteroides sp. 1_1_14]
          Length = 320

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 16/174 (9%)

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           +K+  ++ +  E     +   K+  +LP  L++++   ++D  +          D R   
Sbjct: 162 IKFYYEKVLGQERRCYKVNRAKREKTLPDVLSKEEIKKILDATV---------TDLRFFC 212

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC 217
           +  +LY  GLRISE L L P +I + +S +R+ QGKG K R   L   + K + EY  L 
Sbjct: 213 MFSILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSKPLMKKLTEYNRL- 271

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
                   ++ LF    G+P    +  + ++   R  G+      H LRHSFAT
Sbjct: 272 -----YKPKVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFAT 320


>gi|299137463|ref|ZP_07030645.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
 gi|298600868|gb|EFI57024.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
          Length = 430

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 127/304 (41%), Gaps = 20/304 (6%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P+ + FE L   + +  +L   RGL   T+++YE   R FL F +       +   +  +
Sbjct: 129 PQEMWFEELL--RAYSHSLVYNRGLVHRTVETYESKARTFLKFFSR------SNHNLSGI 180

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           S  ++ AF+ ++  ++    ++      I+SFL++ + R          +    KS  +P
Sbjct: 181 SLLDVDAFMQEKVMEEWKAEAIASHCQAIRSFLRFAESRNWCDR----GIHQGIKSPRVP 236

Query: 127 RALNEKQALTLVD-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           R   E +  T      LL +    K  + R  A+L L    GLR SE + L  ++     
Sbjct: 237 RNTGESKGPTWPQVKKLLRSFKGQKASERRAKAMLMLCAIYGLRASEVIGLQLEDFDWRN 296

Query: 186 STLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK--PLNPGV 242
            T  ++  K   ++  P+   V +AIL Y      D        LF  +R     ++   
Sbjct: 297 ETFMVRRAKRGGVQHFPMEYEVGEAILAYLKQ---DRPRCASRLLFVSLRAPYVAVSTTS 353

Query: 243 FQRYIRQLRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             R +    R  G+ L+    H+LRH+ AT LL  G  L  I   LGH  L +  IY   
Sbjct: 354 LWRAVGPRLRSFGVQLNHVGVHSLRHACATRLLHKGSSLHQIADFLGHRDLKSVSIYARC 413

Query: 302 NSKN 305
           + ++
Sbjct: 414 DVRS 417


>gi|89147683|gb|ABD62700.1| integrase [uncultured bacterium]
          Length = 161

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 40/58 (68%)

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           QR ++   +   L    T HT RHSFATH+L NG D+R++Q +LGH  +STTQIYT+V
Sbjct: 103 QRAVKLAAKTARLAKPVTPHTFRHSFATHVLENGYDIRTVQDLLGHKDVSTTQIYTHV 160


>gi|89147502|gb|ABD62611.1| integrase [uncultured bacterium]
          Length = 163

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 44/69 (63%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R   ++    Q+ +++     G+    + HTLRHSFATHLL  G D+R++Q +LGH  +
Sbjct: 94  VRRHHIHENGLQKQVKKAVEAAGISKKVSCHTLRHSFATHLLEAGSDIRTVQELLGHADV 153

Query: 293 STTQIYTNV 301
           STT IYT+V
Sbjct: 154 STTMIYTHV 162


>gi|138898385|ref|YP_001127570.1| putative integrase/recombinase Xer [Geobacillus thermodenitrificans
           NG80-2]
 gi|134268631|gb|ABO68825.1| Putative integrase/recombinase Xer [Geobacillus thermodenitrificans
           NG80-2]
          Length = 307

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 142/307 (46%), Gaps = 41/307 (13%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ++L E + +LQ    E+G S  T+ SY  D  QFL  L     + +T   IR+     I+
Sbjct: 3   KMLHEYETYLQ----EKGFSPNTVISYLNDVNQFLKDLHLRPGDYVTSADIRKW----IQ 54

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
             ++    + +   ++ R L+ ++SF  +  +     ++ + ++++LK ++      + +
Sbjct: 55  QMLNPAEGKPLAISTINRRLNSLRSFYAWAVEHHKIEQNPMKDIQDLKSADE-----DNE 109

Query: 133 QALTLVDNV---LLHTSH----ETKWIDA-----RNSAILYLLYGCGLRISEALSLTPQN 180
           + + L +     LLH       +++ +D      R+ A++YLL   GLR+ E  +L   +
Sbjct: 110 KIMWLTEEEFEDLLHRMRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTD 169

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-------LFRGI 233
           +  +   +RI GKG K+R VP + ++  A LE  D   F   +  + P       +F   
Sbjct: 170 LDLEMKRIRIVGKGMKVRTVP-ISNILLAELE--DWLKFRAEMAKKKPHVAESPYVFYSQ 226

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFR 291
           R    +P    R I+++     LP    T H  RH+F   +L +   D+  ++ + GH  
Sbjct: 227 R----SPKFSVRGIQRMIESYSLPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSN 282

Query: 292 LSTTQIY 298
           ++TT  Y
Sbjct: 283 IATTSRY 289


>gi|302343256|ref|YP_003807785.1| integrase family protein [Desulfarculus baarsii DSM 2075]
 gi|301639869|gb|ADK85191.1| integrase family protein [Desulfarculus baarsii DSM 2075]
          Length = 304

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 98/215 (45%), Gaps = 5/215 (2%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S+ R  + +++F  +  +  +  ++   ++R  +    LP  L   +   L+  +     
Sbjct: 83  SVHRMKAAVRAFFAWAVEVGVVDDNPARSIRMHRLPRKLPVFLTTAEKKRLLKEL----K 138

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
             T +   R+ A++ +L G G+R+ E  +L   +I  D   LR++ KG+  ++  +   +
Sbjct: 139 GRTDFSALRDRAMIEVLLGTGIRLGELAALDMDDIDLDAKHLRVRAKGNVPQVKFIKTDL 198

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           R  +  Y           ++        G+     +  R    LR+  G+    T H LR
Sbjct: 199 RTLLRRYLAERRRHGRPEMEALFLSNRDGRLCQRQIANRLAHWLRKA-GIEKELTPHGLR 257

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H+FATHL S   DL  +Q  LGH  +STTQ+YT++
Sbjct: 258 HTFATHLYSATNDLLVVQRALGHRDVSTTQVYTHL 292


>gi|190404345|ref|YP_001960976.1| rcorf1 [Agrobacterium rhizogenes]
 gi|158322141|gb|ABW33558.1| rcorf1 [Agrobacterium rhizogenes]
          Length = 338

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 125/312 (40%), Gaps = 19/312 (6%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
           M G+ +       +L ER  W  + L   RG+S  T+ SY    R    F         +
Sbjct: 1   MGGSVMRRTNDLAVLIER--WFTDRLMKHRGVSSNTIASYRDTFRLLFAFAQARLGRSPS 58

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGD-RSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
             T+R L    I AF+    TQ+    R+    L+ I+SF +Y    +    ++I     
Sbjct: 59  QLTLRDLDAPFIGAFLEVLETQRAASVRTRNLRLTAIRSFFRYAAFEEPAHSAHI----- 113

Query: 119 LKKSNSLPRALNEKQALTLVD----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            ++  ++P    +K+ L  +       +L  +  + W+  R+  +L L    GLR+SE +
Sbjct: 114 -QRVLAIPSKRCDKRQLQFLTRPEIESILDCTDRSTWLGRRDYTLLLLAAQTGLRVSEVI 172

Query: 175 SLTPQNIMDDQST-LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
            L   ++M  +   ++  GKG K R  PL    ++A+  +    P         P   G 
Sbjct: 173 DLDRDSVMLGRGAHVQCVGKGRKERSTPLTKVAQEALRRWLKE-PGKRGATALFPNMHGG 231

Query: 234 R--GKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
           R     +   VF    R     + L     + H LRHS A  LL  G D   I   LGH 
Sbjct: 232 RLSADGVQALVFAAVYRAREHCVSLRSKRVSPHVLRHSAAMELLQAGVDCSVIALWLGHE 291

Query: 291 RLSTTQIYTNVN 302
            + TT  Y + +
Sbjct: 292 AMETTLTYLHAH 303


>gi|294500323|ref|YP_003564023.1| putative tyrosine recombinase XerC-like protein [Bacillus
           megaterium QM B1551]
 gi|294350260|gb|ADE70589.1| probable tyrosine recombinase XerC-like protein [Bacillus
           megaterium QM B1551]
          Length = 283

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 139/301 (46%), Gaps = 38/301 (12%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+ N+L  I    L+ +   WL    IE G S  T+++Y     QF  +L   +E +   
Sbjct: 1   MKKNSLEVI---PLIDDFSQWL----IESGKSDNTIKTYRAVLNQFHEWL--LSEGR--- 48

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             + Q++   ++ ++    +      +++++   I  F ++L+K +I    NI   R  K
Sbjct: 49  -HLDQVTKNNVQTYMINLESNNKSASTIEKAFVTISVFARFLEKPEIV--QNIERKRKEK 105

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
            +  +P++L   +    +D +L     +    + R+ AI+Y L   G+R+SE  +L  ++
Sbjct: 106 NNEVVPQSLEASE----LDRLLSEVKQQG---NLRDIAIVYTLLHTGVRVSEICALNHKD 158

Query: 181 IMDDQST---LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
           +  ++S    +    KG K R VPL    R ++ +Y D    D N      LF     + 
Sbjct: 159 VEINKSDGFLIIRNAKGCKKRFVPLSTEARNSLKKYID--SLDSN---HEALFVSNFDRR 213

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           ++P   Q Y+  L++Y     +   H LRH+F   L+  G D+ ++  + GH  ++ T+ 
Sbjct: 214 MSPRTVQ-YM--LKKY-----NVNPHKLRHTFCHELVKKGIDIATVAELAGHSDVNVTKR 265

Query: 298 Y 298
           Y
Sbjct: 266 Y 266


>gi|196250844|ref|ZP_03149530.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|196209682|gb|EDY04455.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 304

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 141/306 (46%), Gaps = 41/306 (13%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +L E + +LQ    E+G S  T+ SY  D  QFL  L     + +T   IR+     I+ 
Sbjct: 1   MLHEYETYLQ----EKGFSPNTVISYLNDVNQFLKDLHLRPGDYVTSADIRKW----IQQ 52

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            ++    + +   ++ R L+ ++SF  +  +     ++ + ++++LK ++      + ++
Sbjct: 53  MLNPAEGKPLAISTINRRLNSLRSFYAWAVEHHKLEQNPMKDIQDLKSADE-----DNEK 107

Query: 134 ALTLVDNV---LLHTSH----ETKWIDA-----RNSAILYLLYGCGLRISEALSLTPQNI 181
            + L +     LLH       +++ +D      R+ A++YLL   GLR+ E  +L   ++
Sbjct: 108 IMWLTEEEFEDLLHRMRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDL 167

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-------LFRGIR 234
             +   +RI GKG K+R VP + ++  A LE  D   F   +  + P       +F   R
Sbjct: 168 DLEMKRIRIVGKGMKVRTVP-ISNILLAELE--DWLKFRAEMTKKKPHVAQSPYVFYSQR 224

Query: 235 GKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRL 292
               +P    R I+++     LP    T H  RH+F   +L +   D+  ++ + GH  +
Sbjct: 225 ----SPKFSVRGIQRMIESYSLPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNI 280

Query: 293 STTQIY 298
           +TT  Y
Sbjct: 281 ATTSRY 286


>gi|257451926|ref|ZP_05617225.1| integrase/recombinase [Fusobacterium sp. 3_1_5R]
 gi|317058477|ref|ZP_07922962.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           3_1_5R]
 gi|313684153|gb|EFS20988.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           3_1_5R]
          Length = 333

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 27/188 (14%)

Query: 138 VDNVLLHTSHETKWI----------DARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           +DN+L  +S++ K I          D RN  ILY LY  G+R  E L +  +++M+ + +
Sbjct: 128 LDNILKISSNDIKKIIEQFQVKSEKDYRNLMILYTLYYTGMRSDELLHMEFRHLMNREGS 187

Query: 188 --LRIQG-KGDKIRIVPLLPSVRKAILEY-------YDLCPFDLNLNIQLPLFRGIRGKP 237
             L+++  K  + +  PL P++ + + EY       Y L   DL  +    +F     K 
Sbjct: 188 YFLKLEKTKSGREQYKPLHPALMEKLQEYKKEMKALYQLEEEDLQNHF---VFCSHFDK- 243

Query: 238 LNPGVFQRYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            N  +  R +  L + LGL +    + H +RH+ AT L  NG DL  I+  LGH     T
Sbjct: 244 -NKALSYRALYDLIKSLGLSIEKDMSPHNIRHAIATELSLNGADLVEIRDFLGHADTKVT 302

Query: 296 QIYTNVNS 303
           +IY N  S
Sbjct: 303 EIYINAKS 310


>gi|149198038|ref|ZP_01875086.1| Integron integrase [Lentisphaera araneosa HTCC2155]
 gi|149138950|gb|EDM27355.1| Integron integrase [Lentisphaera araneosa HTCC2155]
          Length = 382

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 73/171 (42%), Gaps = 25/171 (14%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY--- 214
            ++ +LYGCGLR  E   L   +I   +  +R+     K++ V  LP +    L+ +   
Sbjct: 203 VMVKMLYGCGLRSGELYKLRVGDIDFSEEVIRVVDGSGKVKRVNFLPIILHKELKNHLKW 262

Query: 215 --DLCPFDLNLNIQ-----------LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
             +L   D  L +            L L R  +G  L    F    R LRR     L   
Sbjct: 263 VKELYENDYKLGVADDWSTYYLFPALDLHRNQQGLKLQRKCFSD--RILRRKFSQVLDEM 320

Query: 262 AH-------TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            H       + R SFA H L  GGD+R++Q +LGH ++  T IY ++   N
Sbjct: 321 GHKGVFKLASFRDSFAVHYLEGGGDIRTLQKLLGHQKVGQTMIYNDLTQLN 371


>gi|83722819|gb|ABC41681.1| integrase [uncultured bacterium]
          Length = 163

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/45 (71%), Positives = 37/45 (82%), Gaps = 2/45 (4%)

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           PLS  AHTLRHSFATHLL  G DLR+IQ +LGH  ++TTQIYT+V
Sbjct: 120 PLS--AHTLRHSFATHLLEAGHDLRTIQELLGHKDIATTQIYTHV 162


>gi|160945174|ref|ZP_02092400.1| hypothetical protein FAEPRAM212_02693 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442905|gb|EDP19910.1| hypothetical protein FAEPRAM212_02693 [Faecalibacterium prausnitzii
           M21/2]
          Length = 402

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 138/313 (44%), Gaps = 52/313 (16%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFL-----------------------AFYTEEK 57
           +++ LE+  G S  T  SY CD R F  F+                       AF+    
Sbjct: 26  YVRYLEVIAGKSANTAFSYYCDLRSFSRFMKRRRGLVATDAEFKEIDPKGLDTAFWG--S 83

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNM 116
           IT + I +  Y     F+++    K    S  R L+ +  F  YL  +    +E     +
Sbjct: 84  ITKEDIYEYLY-----FLNRECGNK--KSSTARRLASLHGFYDYLVNQVNRLSEDPTAAI 136

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           R  K+   LP+ L  +Q+++L     L ++        R+  ++ L   CG+R++E + +
Sbjct: 137 RPPKQDKVLPKYLTAEQSISL-----LESTQTQSDFPERDYCMVVLFLNCGMRLAELVGM 191

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-------DLCPFDLNLNIQLPL 229
              +I  +Q  +R+ GKG K R+V L  +  +A+  Y         L P +  + I    
Sbjct: 192 DLGDIDLEQRQIRLFGKGHKERMVYLNNACVEALQLYLRKRNTMEGLSPKEKAVFITR-- 249

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG-DLRSIQSILG 288
              +R + ++    ++ I    +  GL   +T H LRH+ AT +   G  D+ +++ +LG
Sbjct: 250 ---MRKERISNRRVEQLISGAMKAAGLKGFST-HKLRHTAATLMYQTGNVDILTLKQLLG 305

Query: 289 HFRLSTTQIYTNV 301
           H  + TTQIYT++
Sbjct: 306 HSSVGTTQIYTHL 318


>gi|134288322|ref|YP_001110485.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134132972|gb|ABO59682.1| phage integrase family protein [Burkholderia vietnamiensis G4]
          Length = 576

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 127/306 (41%), Gaps = 47/306 (15%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +E+ R LS LT +    D   +  FL   T     I  +R  S  + R F        + 
Sbjct: 266 VELGRALSSLTTE----DAIAYRTFLRHPTPRDRWIGPVRPRSSPDWRPF-----NGNLS 316

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT-----LVD 139
            RS+  +LS I +  ++L +++    +    ++ ++ SN  P AL+   A T     LV 
Sbjct: 317 ARSVAHALSIIGALFRWLVEQRYVLANPFAGIK-VRGSN--PTALDASHAFTDGEWALVR 373

Query: 140 NVLLHTSHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDD---QSTLRIQGK 193
            +         W       + +LL   Y  GLR SE +  T   +  D      LR+ GK
Sbjct: 374 AIADGLEWSNGWAIPAAQRLRFLLDFGYATGLRASELVGATLGGVETDARGDHWLRVNGK 433

Query: 194 GDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGI---RGKPLNPGVFQRYI 247
           G K+  V L P   +A+  Y     L    ++   + P+   +   RG  ++     R  
Sbjct: 434 GKKLARVALPPLAWEALARYLAERGLPVVPVHWQPKTPIIGSLDTDRGTAISS---VRLW 490

Query: 248 RQLRRYLGL----------PLS-----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
             +RR+  L          PL+      + H +RH+ ATH L +G +L +++  L H  +
Sbjct: 491 MIMRRFFLLSADSIEADHAPLADKLRRASPHWMRHTHATHALGSGAELTAVRDNLRHASV 550

Query: 293 STTQIY 298
           STT IY
Sbjct: 551 STTSIY 556


>gi|153853140|ref|ZP_01994549.1| hypothetical protein DORLON_00534 [Dorea longicatena DSM 13814]
 gi|149753926|gb|EDM63857.1| hypothetical protein DORLON_00534 [Dorea longicatena DSM 13814]
          Length = 366

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 118/287 (41%), Gaps = 31/287 (10%)

Query: 38  SYECDTRQFLIFL-------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI------- 83
           +Y  D R F  FL         YT ++ T Q +  L   +I  ++   +  K        
Sbjct: 60  NYAYDIRVFFHFLMENNPVYKNYTIDRFTPQDLENLEPVDIEEYLEYLKVYKRDEDGELI 119

Query: 84  --GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
             G++ L R +S ++SF  Y  K +I  ++  L +   K  +     L+  +   L+D V
Sbjct: 120 TNGEKGLARKMSALRSFYGYYFKHRIIQKNPTLLVDMPKLHDKAIIRLDTDEVALLLDFV 179

Query: 142 LLHTSHET-------KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
                H T       K    R+ AIL LL G G+R+SE + L  +++    + + +  KG
Sbjct: 180 ESAGEHLTGQALNYYKKTRDRDIAILTLLLGTGIRVSECVGLDIKDVDFKNNGIMVTRKG 239

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQ 249
               +V     V +A+  Y      D      LP     LF   + K +     +  +++
Sbjct: 240 GNQMVVYFGDEVAEALKNY---MAGDREAATPLPGHEQALFLSTQRKRMGVQAVENMVKK 296

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
             R +      T H LR ++ T L    GD+  +  +LGH  ++TT+
Sbjct: 297 YARQVTPNKKITPHKLRSTYGTSLYKETGDIYLVADVLGHKDVNTTK 343


>gi|18310077|ref|NP_562011.1| integrase/recombinase [Clostridium perfringens str. 13]
 gi|18144756|dbj|BAB80801.1| probable integrase/recombinase [Clostridium perfringens str. 13]
          Length = 338

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 137/310 (44%), Gaps = 37/310 (11%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL-----AFYTEEKITIQTIR--- 64
           ELL   ++++ + +  R L + T+++YE   R    FL       Y E+ +  + IR   
Sbjct: 11  ELLDILEDYMTDCKY-RDLRRTTIRAYEQSLRLLFKFLEDDYKVIYVED-VKEEHIRNYI 68

Query: 65  -------QLSYTEIRAFISKRRTQKIGDRSLKRSLS-------GIKSFLKYLKKRKITTE 110
                  + SY      I+    Q  GD   K SL         IK F  + K  K+ ++
Sbjct: 69  DFTKERGKYSYVANENNINSNVPQNRGDFGKKVSLCTLDNYLGNIKMFFTWCKDNKLISK 128

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVD-NVLLHTSHETKWIDARNSAILYLLYGCGLR 169
                ++ +K S         K  +T+ + N LL +   T + + R+  ++ LL   G+R
Sbjct: 129 DPSFKIKRIKYSRK------AKAEITIDEFNKLLKSLDLTLFSEYRDYIVIQLLMDTGMR 182

Query: 170 ISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           + E L L  ++I     T+ I G   KG + R V    ++++ + ++ +     +  N  
Sbjct: 183 VGECLELREEDIDIRNKTIFISGEIAKGRRDRYVFFSNTMQRMLQKWLNYKDRYVESNY- 241

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
             +F   RG       F++++R   +   +    T HTLR++FA   L +GGD+ ++  +
Sbjct: 242 --IFVTNRGGKYQVHSFEKHMRNYLKKAKIDKQITPHTLRNNFAKRFLMSGGDIYTLSRL 299

Query: 287 LGHFRLSTTQ 296
           LGH  + TTQ
Sbjct: 300 LGHSDIRTTQ 309


>gi|197336531|ref|YP_002157554.1| phage integrase, putative [Vibrio fischeri MJ11]
 gi|197315234|gb|ACH64682.1| phage integrase, putative [Vibrio fischeri MJ11]
          Length = 323

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 72/160 (45%), Gaps = 9/160 (5%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
           D RN+AI  LL GCGLR SE ++L    ++  DDQ  +R  GKG   R VP+  S    +
Sbjct: 149 DIRNNAIFALLVGCGLRCSELMTLQIDALVYKDDQHWVRFFGKGHVERCVPINDSTLPYL 208

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGK-----PLNP-GVFQRYIRQLRRYLGLPLSTTAHT 264
            E+  +   +L L       R  RG      P+       R ++     LG     + H 
Sbjct: 209 EEWVQIRK-ELKLTSTTLFIRTRRGNTFVDHPIKARSSIYRLVQSRCLALGAKFMVSPHD 267

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           LR + AT L   G  +  IQ ILGH    TTQ Y   + K
Sbjct: 268 LRRTTATILYHAGVRISVIQDILGHADEKTTQRYIQKDEK 307


>gi|17158102|ref|NP_478098.1| IntIdelta1 protein [Corynebacterium glutamicum]
 gi|17059621|emb|CAD12229.1| IntIdelta1 protein [Corynebacterium glutamicum]
          Length = 387

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 82/182 (45%), Gaps = 37/182 (20%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207
           LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R         
Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198

Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                                  +A   +     F  + +   P    +R   +    FQ
Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT +   + + 
Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTALLQRLAAV 318

Query: 305 NG 306
            G
Sbjct: 319 RG 320


>gi|89147394|gb|ABD62557.1| integrase [uncultured bacterium]
          Length = 163

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 41/60 (68%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             Q+ +R   R  G+  + + H+LRHSFATHLL  G D+R+IQ ++GH  +STT IYT+V
Sbjct: 103 ALQKAVRAAIRAAGITKTGSCHSLRHSFATHLLEAGYDIRTIQELMGHADVSTTMIYTHV 162


>gi|159038073|ref|YP_001537326.1| integrase family protein [Salinispora arenicola CNS-205]
 gi|157916908|gb|ABV98335.1| integrase family protein [Salinispora arenicola CNS-205]
          Length = 332

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 119/281 (42%), Gaps = 18/281 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE-IRAFISK 77
           + WL N    R LS  T  +Y  D   +L + A    + +    +   +Y   + +  + 
Sbjct: 27  EAWLGN----RRLSDHTRDAYRRDVAGWLGWCAGADLDPLQATFLHVNAYARTLESTPTA 82

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSLPRALNEKQAL 135
           R  + +   ++ R LS + S+  +L K +    + +   +  ++ + +S    L  ++  
Sbjct: 83  RSGKPLTPATVARKLSALSSWYDFLVKLRAVGVNPVTGADRPHVDRDHSATVGLTPEE-- 140

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL--TPQNIMDDQSTLRIQGK 193
             V+ +L+     +    ARN A + LL   GLR+ E +SL  T   +     ++R  GK
Sbjct: 141 --VNAMLVVADTASGPTAARNRAAVALLADLGLRVGELVSLDITDLGVERGHHSVRFAGK 198

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           G + R   L P    A+  Y         +    +  PL     G  L+     R +R+L
Sbjct: 199 GGRARRRALTPHTSSAVHAYLTQRAGAAGVPTHRLTGPLLVTSTGARLDRHSVFRLVRRL 258

Query: 251 RRYLGLP--LSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
            R  G+P     + H+LRHSFAT   + G  L  +Q  +GH
Sbjct: 259 ARAAGIPGWARLSPHSLRHSFATTARAEGVPLEDVQDAMGH 299


>gi|89147367|gb|ABD62544.1| integrase [uncultured bacterium]
          Length = 163

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 44/64 (68%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+  V Q+ +++  R  G+  + + HT RHSFATHLL NG D+R++Q +LGH  + TT I
Sbjct: 99  LSDDVIQKAVKKAIRGAGILKNGSCHTFRHSFATHLLENGYDIRTVQELLGHKDVRTTMI 158

Query: 298 YTNV 301
           YT+V
Sbjct: 159 YTHV 162


>gi|310643234|ref|YP_003947992.1| integrase family protein [Paenibacillus polymyxa SC2]
 gi|309248184|gb|ADO57751.1| Integrase family protein [Paenibacillus polymyxa SC2]
          Length = 145

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 68/135 (50%), Gaps = 19/135 (14%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIR-GKPLNPGVFQRY 246
           QGKG K R   LL     A++E Y        +  + P   LF G R G+ L     Q+ 
Sbjct: 20  QGKGRKDRQT-LLSEAAFAVVEQY--------IGWEQPADWLFPGQREGRHLTERSAQKV 70

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
             +     G+    + H+LRHSFATHLL NG DLR IQ +LGH  + TT+  T+V+ ++ 
Sbjct: 71  FEKALAEAGIRKQVSIHSLRHSFATHLLENGIDLRYIQELLGHQSVRTTERCTHVSRRDI 130

Query: 307 G------DWMMEIYD 315
           G      D M E+ D
Sbjct: 131 GRIQSPLDRMSELED 145


>gi|227461216|gb|ACP39552.1| putative integron integrase [uncultured microorganism]
          Length = 311

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 40/58 (68%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            QR +RQ  R  G+    + HTLRHSFATHLL +G D+R++Q +LGH  + TT IYT+
Sbjct: 254 LQRALRQAVRGAGIIKPASVHTLRHSFATHLLESGYDIRTVQELLGHADVKTTMIYTH 311


>gi|149374827|ref|ZP_01892600.1| resolvase [Marinobacter algicola DG893]
 gi|149360716|gb|EDM49167.1| resolvase [Marinobacter algicola DG893]
          Length = 246

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 94/205 (45%), Gaps = 28/205 (13%)

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           L+  +++P+ L + + LTL++    H  H           IL L++  G R+SE L++T 
Sbjct: 51  LETLDTMPKYLLKPEVLTLLE-AETHPMHR---------LILDLMWCTGARVSEVLAITS 100

Query: 179 QNIMDDQSTLRI------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
            +  DD     +      QG G      P   S++++   +  +   D    IQ  L+ G
Sbjct: 101 ASFHDDGYDFGVILKTLKQGAGR-----PSKRSLQRSPKRFIPILDRDFQTRIQSYLWMG 155

Query: 233 IRGK-----PLNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
              K     P+        I +L   +G   P     HT RHSFA HLL +G  L+ +  
Sbjct: 156 KFRKDERIFPITRQAVSANIDRLIEQVGGDPPFKIGCHTFRHSFAVHLLLHGRPLKFVSQ 215

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWM 310
           +LGH  + +T++YTNV + +G  ++
Sbjct: 216 LLGHRSVESTEVYTNVLTFDGAHFL 240


>gi|89147669|gb|ABD62693.1| integrase [uncultured bacterium]
          Length = 163

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R   ++    QR +R   R  G+    + HT RHSFATHL+ +G D+R++Q +LGH  +
Sbjct: 94  VRRHHVDEQALQRAVRSAVRVAGIKRPGSCHTFRHSFATHLIEDGYDIRTVQELLGHKDV 153

Query: 293 STTQIYTNV 301
            TT IYT+V
Sbjct: 154 KTTMIYTHV 162


>gi|74317233|ref|YP_314973.1| integron integrase [Thiobacillus denitrificans ATCC 25259]
 gi|74056728|gb|AAZ97168.1| integron integrase [Thiobacillus denitrificans ATCC 25259]
          Length = 326

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 138/320 (43%), Gaps = 68/320 (21%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R  S  T QSY    R++++F      +K   +   ++   E+R F+S    ++    S 
Sbjct: 24  RHYSLRTEQSYVDWARRYILF-----HQK---RHPAEMGAAEVREFLSHLAVERNVSAST 75

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQALTLVDNVLLHTSH 147
           +      KS L +L +  +  E   L+   + KS   LP  L + +   L++        
Sbjct: 76  QNQ---AKSALLFLYREVLKIELPWLDEVVVAKSAKRLPVVLTQVEVRALLNA------- 125

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKG--DKIRIVP--- 201
               +      +  LLYG G+R+ E L L  +++   +  + + +GKG  D++ ++P   
Sbjct: 126 ----MSGTMGLVASLLYGTGMRLLEGLRLRVKDVEFSRREIIVREGKGNKDRVTVLPENL 181

Query: 202 LLPSVRKAILEYY-DLCPFDLNLN---IQLPLFRGIRGKPLNPG-------VFQRYIRQL 250
           +LP   KA LE    L   DL      + LP    +  K  N         VF   +R +
Sbjct: 182 ILPL--KAHLEKVRTLHERDLEAGYGAVYLP--DALAAKYPNAARAWGWQYVFPSPVRAV 237

Query: 251 -------RRY-----------------LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
                  RR+                  GL    T H LRHSFATHLL  G D+R++Q +
Sbjct: 238 DPRSGVERRHHVYETSVQRAVREAARAAGLHKPVTPHVLRHSFATHLLQAGYDIRTVQEL 297

Query: 287 LGHFRLSTTQIYTNVNSKNG 306
           LGH  +STT IYT+V +K G
Sbjct: 298 LGHKDVSTTMIYTHVLNKGG 317


>gi|291551222|emb|CBL27484.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 327

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 132/294 (44%), Gaps = 37/294 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI--- 75
           +++L    IE G S+ TL+ Y    +  L  +          ++I+ +   +IR ++   
Sbjct: 54  ESFLSAKRIE-GCSEKTLKYYNATIQSMLDGIG---------KSIKYIVTDDIRCYLTEY 103

Query: 76  -SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
            +K+++ K+   +++R LS   SF  +L+      +S +  +  +K   ++    +++  
Sbjct: 104 QAKKKSSKVTIDNIRRILS---SFFSWLEDEDYILKSPVRRIHKVKTGTNIKETYSDEAL 160

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             + DN            + R+ A++ +L   G+R+ E + L  ++I  ++    + GKG
Sbjct: 161 ELMRDNC----------TELRDLAMIDMLASTGMRVGEMVLLNREDIDFNERECVVFGKG 210

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           DK RIV      +  +  Y +    D   L +++Q P  R      +N G  +  +RQL 
Sbjct: 211 DKERIVYFDARTKIHLQNYLNSRKDDNPALFVSLQSPHNR------MNIGGIEVRLRQLG 264

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           + LGL      H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V   N
Sbjct: 265 KRLGLN-KVHPHKFRRTLATMAIDKGMPIEQLQQLLGHRRIDTTLQYAMVKQSN 317


>gi|89147353|gb|ABD62537.1| integrase [uncultured bacterium]
          Length = 163

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 43/69 (62%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R   ++    QR ++   R   +  + T HT RHSFATHLL NG D+R++Q +LGH  +
Sbjct: 94  MRRHHVDEKSLQRAVKGAVRAARIDKTATCHTFRHSFATHLLKNGHDIRTVQELLGHKDV 153

Query: 293 STTQIYTNV 301
            TT IYT+V
Sbjct: 154 RTTMIYTHV 162


>gi|221636287|ref|YP_002524163.1| tyrosine recombinase [Thermomicrobium roseum DSM 5159]
 gi|221157480|gb|ACM06598.1| tyrosine recombinase [Thermomicrobium roseum DSM 5159]
          Length = 334

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 10/159 (6%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL 216
           A++  L+  G+R+SE  +L  Q+I  +  T RI + KG K R V       +A+  Y+  
Sbjct: 159 ALILFLFRTGVRVSELCALRRQDIDLETGTARIYRAKGGKSRTVHFDSETAEALAAYWR- 217

Query: 217 CPFDLNLNI-QLPLFRGIRGKPLNPG------VFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
              D    +   P F G R +P  PG        Q  + +L    G+  + T H+ RH  
Sbjct: 218 ARGDSGRGVNAFPAFSG-RDRPGQPGKAIAPRTVQALVSRLSEEAGVEFAVTPHSFRHGL 276

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           AT L+       ++Q+ILGH    TT+IY ++ ++   +
Sbjct: 277 ATELVRRRVRESTVQTILGHASPVTTRIYVHLTAQEAAE 315


>gi|296392530|ref|YP_003657414.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296179677|gb|ADG96583.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 349

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 114/238 (47%), Gaps = 24/238 (10%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           Q S  ++  +++++ +  +G  SL      +K++ K+L+  +  T+  ++ +  ++  + 
Sbjct: 107 QASALDVARWLAQQSS--LGQSSLATYSQYLKAWFKWLQVHEHRTDDPMVKVGTVRYPDR 164

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG-CGLRISEALSLTPQNIMD 183
            PR ++++    L++ V           + + + ++ LLY   GLR  E   L  ++I+D
Sbjct: 165 APRPVSDRDLARLLETV-----------NRKRTRLMVLLYCLAGLRAFEIAKLRGEDIVD 213

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
               +R+ GKG+K R+VPL P + +AI        +    + + P    I GK     V 
Sbjct: 214 G-VFVRVLGKGNKERLVPLHP-ILQAIAPTMPERGWWFPRDSRWPGMH-ISGK----SVS 266

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           Q     +RR     +  T H LRH   T LL  G D+R +Q I+ H  +STT  YT V
Sbjct: 267 QTISLTMRRA---GVRATPHQLRHWQGTTLLDEGVDIRVVQEIMRHASISTTAQYTQV 321


>gi|257467272|ref|ZP_05631583.1| integrase/recombinase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315918401|ref|ZP_07914641.1| DNA integration/recombination/inversion protein [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313692276|gb|EFS29111.1| DNA integration/recombination/inversion protein [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 333

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 90/188 (47%), Gaps = 27/188 (14%)

Query: 138 VDNVLLHTSHETKWI----------DARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           +DN+L  +S++ K I          D RN  ILY LY  G+R  E L +  +++M+ + +
Sbjct: 128 LDNILKISSNDIKKIIEQFQVKNEKDYRNLMILYTLYYTGMRSDELLHMEFRHLMNREGS 187

Query: 188 --LRIQG-KGDKIRIVPLLPSVRKAILEY-------YDLCPFDLNLNIQLPLFRGIRGKP 237
             L+++  K  + +  PL P++ + + EY       Y L   DL  +    +F     K 
Sbjct: 188 YFLKLEKTKSGREQYKPLHPALMEKLQEYKKEMKALYQLEEEDLQNHF---VFCSHFDK- 243

Query: 238 LNPGVFQRYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            N  +  R +  L + LGL +    + H +RH+ AT L  NG DL  I+  LGH     T
Sbjct: 244 -NKALSYRALYDLIKSLGLSIEKEMSPHNIRHAIATELSLNGADLVEIRDFLGHADTKVT 302

Query: 296 QIYTNVNS 303
           ++Y N  S
Sbjct: 303 EVYINAKS 310


>gi|238924066|ref|YP_002937582.1| phage integrase family protein [Eubacterium rectale ATCC 33656]
 gi|238875741|gb|ACR75448.1| phage integrase family protein [Eubacterium rectale ATCC 33656]
 gi|291528878|emb|CBK94464.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 349

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 130/299 (43%), Gaps = 42/299 (14%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           FE +K     L+  +I      L  Q    D  ++L +L +Y ++ +             
Sbjct: 56  FEYMKSANPSLKKYDIRDYPISLLDQISPSDIEEYLFYLKYYEKDGVV------------ 103

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLK-YLKKRKITTE-SNILNMRNLKKSNSLPRAL 129
                        +R +KR L+ +++F   Y +K  I T  ++ + +  + + N +   L
Sbjct: 104 ---------HTNDERGIKRKLASLRTFYNFYFRKEFIDTNPASKVTLPKIHEKNII--RL 152

Query: 130 NEKQALTLVDNVLLHTS--------HETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           +  +   L+D V    S        HE   +  R+ A++ LL G G+R+SE + L   ++
Sbjct: 153 DTDEVAQLLDEVESGDSLSKNQQRFHEKTKV--RDLALMTLLLGTGIRVSECVGLDMDDV 210

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKP 237
               + +++  KG    IV     VR A+L Y++    + P + + N    LF  ++ K 
Sbjct: 211 DFKNNGIKVHRKGGADVIVYFGDEVRDALLSYWEERSIITPAEGHAN---ALFLSLQRKR 267

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           ++    +  +++  R +    + T H LR ++ T L    GD+  +  +LGH  ++TT+
Sbjct: 268 ISVRSVENLVKKYSRLVTTVKNITPHKLRSTYGTTLYQETGDIYLVADVLGHKDVNTTR 326


>gi|163752268|ref|ZP_02159468.1| transposase [Shewanella benthica KT99]
 gi|161327851|gb|EDP99031.1| transposase [Shewanella benthica KT99]
          Length = 506

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 62/111 (55%), Gaps = 9/111 (8%)

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---LNPGVFQRYIR 248
            KG K R VPL P      L YY    +  + + +  LF G  GKP   ++ G  Q+ ++
Sbjct: 9   AKGGKDRFVPL-PKRTLQALRYY----WQTHHHPRF-LFPGKDGKPDSLIDKGGIQKALK 62

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           ++     +  S + H LRHS+ATHLL  G DLRS+Q++LGH  L+TT  YT
Sbjct: 63  RVIGECNIHKSISPHNLRHSYATHLLEQGLDLRSVQTLLGHNSLNTTARYT 113


>gi|312884536|ref|ZP_07744240.1| phage integrase family site specific recombinase [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367848|gb|EFP95396.1| phage integrase family site specific recombinase [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 327

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 132/313 (42%), Gaps = 53/313 (16%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGD 85
           IE     + ++ Y   T +  I+   Y      ++  + +  TE+ A++S     Q +  
Sbjct: 6   IEEIRRHMRMRGYSLKTEKAYIYWIKYFIRFNKLKHPQDMGTTEVTAYLSYLANEQHVAI 65

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            + K +L+ I        +R +      L     KK   +P  L   +    V  +L H 
Sbjct: 66  NTQKVALNAIAFLYNQFLQRPLGD----LGFTYAKKQRKVPSVLTPNE----VQLILSHL 117

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV---- 200
           S         N +I  LLYG GLR++E L +  Q++     +L ++ GKG K R+     
Sbjct: 118 S-------GVNHSIFSLLYGSGLRVNECLRIRVQDLDLQNLSLTVRDGKGKKDRVTLLSP 170

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRG--------------------IRGKPL 238
            L+ S++  I +   +   D+   I   LP   G                    I   PL
Sbjct: 171 TLIDSLQLQIQKASKIQEEDIKQGIGPSLPHALGKKYPNAFKQIAWMFIFPSLSICRHPL 230

Query: 239 NPGVFQRYI------RQLRRYLG----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
              + + ++      + L+R +          T HT RHSFAT LL +G D+R++Q +LG
Sbjct: 231 TNKLCRHHLHDSAPRKALKRAVQQAKIFNKRITCHTFRHSFATELLRSGQDIRTVQELLG 290

Query: 289 HFRLSTTQIYTNV 301
           H  ++TTQIYT+V
Sbjct: 291 HSDVATTQIYTHV 303


>gi|295114677|emb|CBL35524.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1]
          Length = 345

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 124/290 (42%), Gaps = 17/290 (5%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDR 86
           +R  S  T+++Y     Q L ++A   +  +   T   + Y  + A++     +K +G  
Sbjct: 24  QRHASSNTVKAYRTAWNQLLKYIAGQKKIPMMSVTFGMIRYEMVVAYLDWLSEEKGVGPA 83

Query: 87  SLKRSLSGIKSFLKY---LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
           +    L+ I++F+ Y    +   I+  S +  ++  KK          + A   V  +  
Sbjct: 84  TRNNRLAAIRAFITYASACRPEYISLSSELAAIKIQKKKRFREVDYMSEDA---VKALFA 140

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPL 202
                TK +  R+  ++  LY  G RI EAL +   ++ +D   T+ + GKG KIR+VPL
Sbjct: 141 APDTRTK-MGLRDQFLMIFLYDTGARIQEALDVKICDLRIDKTPTVTLHGKGGKIRVVPL 199

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLF----RGIRGKPLNPGV---FQRYIRQLRRYL- 254
           +    + +  Y  +     ++     LF    +G R    +       Q+Y    R    
Sbjct: 200 MKDTVQHLDNYMGVFHKGESVFSTEWLFYVERKGSRSAMCDDTARLRIQKYAELARENCP 259

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            +P     H  RH+ A HL  +G DL  I   LGH ++ TT IY   +++
Sbjct: 260 DVPERVHPHLWRHTRAMHLYQHGMDLTMISQWLGHKQVETTLIYAYADTE 309


>gi|149913599|ref|ZP_01902132.1| Integrase [Roseobacter sp. AzwK-3b]
 gi|149812719|gb|EDM72548.1| Integrase [Roseobacter sp. AzwK-3b]
          Length = 196

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 13/158 (8%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-------IQGKGDKIRIVPLLPSVR 207
           R+  I+   +  GLR  E  +L   ++ D+   +R       +Q KG K R V L   +R
Sbjct: 35  RDETIVLFSFYAGLRAKEIAALKRGDVFDEAGAVREQFILSAVQSKGGKTRTVYLNQRLR 94

Query: 208 KAILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           +A+ EY       LNL +   PLF   +G   +     +    + R +GL    ++H+ R
Sbjct: 95  RALAEY----AAGLNLSDPNRPLFESQKGGHFSANTMCQLFLDIYRAVGLK-DASSHSGR 149

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            ++ T L + G  +R +  + GH  +STTQ Y +VNS+
Sbjct: 150 RTYITRLANKGVGVRLLAELAGHSHISTTQRYIDVNSE 187


>gi|318606029|emb|CBY27527.1| integrase [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 314

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 30/189 (15%)

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           ++N+R   +       LN+ Q  +L+D   LH + E        + I+ L    G R +E
Sbjct: 120 LMNIREFDQPEREMAWLNDDQIDSLLDACDLHGNPEL-------TLIVRLCLSTGARWNE 172

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
              +    I  ++ T  I  KG K R VPL   + +A+                      
Sbjct: 173 IAKIKASQISPNKITF-INTKGKKNRTVPLSEDIYQALA--------------------A 211

Query: 233 IRGKPLNPGVFQRYIRQLR-RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
            +GKP  P  ++++ R +R   + LP+    H LRH+FA+H +  GG++  +Q ILGH  
Sbjct: 212 RKGKPFEP-CYKQFYRVIRLAQIELPVGQMTHVLRHTFASHFMMAGGNIIVLQRILGHSD 270

Query: 292 LSTTQIYTN 300
           +  T  Y++
Sbjct: 271 IRVTMRYSH 279


>gi|225353239|gb|ACN88324.1| integrase [Riemerella anatipestifer]
          Length = 284

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 121/298 (40%), Gaps = 58/298 (19%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 8   TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 57

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 58  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 106

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 107 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 166

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 167 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 226

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT
Sbjct: 227 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTT 284


>gi|77734449|emb|CAJ26231.1| integerase-recombinase [Thermotoga petrophila RKU-1]
          Length = 190

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 19/133 (14%)

Query: 158 AILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           AI  +L   G+R+SE ++L+  +I +++ + +RI+GKG+K RI+ +    ++ + E  + 
Sbjct: 76  AIFKVLANTGMRVSEIVNLSVHDISVNETARIRIKGKGNKERIIXI---SKELVEELMNS 132

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
             F+     + P  R I          QR +++  R  G+    T H  RHSFA  L+  
Sbjct: 133 GFFE-----KKPSVRSI----------QRAVKRYARKAGIKKKVTPHIFRHSFAVALIER 177

Query: 277 GGDLRSIQSILGH 289
           G  L  IQ++LGH
Sbjct: 178 GVPLNKIQALLGH 190


>gi|85707507|ref|ZP_01038583.1| putative integrase/recombinase [Roseovarius sp. 217]
 gi|85667964|gb|EAQ22849.1| putative integrase/recombinase [Roseovarius sp. 217]
          Length = 313

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 130/292 (44%), Gaps = 26/292 (8%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI-GDR 86
           +RG S  + ++Y    +    F A       +  +I QL    I AF+    T +  G  
Sbjct: 19  QRGFSAHSSETYAHAFKLLFQFAARRVGSSPSQLSIEQLDAPLILAFLDHLETDRGNGAT 78

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPRALNEKQALTLVDNVLL 143
           S    L+ IKSF+++++ +     + +  +R +   +  N L + L++ +        +L
Sbjct: 79  SRNARLAAIKSFMRFVEYQYPALLAQVAQIRAIPTKRCENKLVQHLSKDEV-----QAVL 133

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLRIQGKGDKIRIVPL 202
           +    T  + AR+ A+++L +  GLR+SE +     +++  Q+ +L ++GKG K R  PL
Sbjct: 134 NAPDVTTRLGARDRAMMHLCFAGGLRVSELVGAALTDLVLGQAPSLLVRGKGRKHRHFPL 193

Query: 203 ---LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ----RYIRQLRRYLG 255
                S  +A L    L P          +F    G+ +    F+    +++ +  ++  
Sbjct: 194 WKQTASDLRAWLAVRGLTPAP-------EIFVNAEGRAMTRSGFEYVLDKHVVKASQHCP 246

Query: 256 --LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
                S + H LRHS A  +L    D+R +   LGH  + TT+ Y  V++  
Sbjct: 247 SLAGRSVSPHQLRHSCAVIMLEATRDIRKVALWLGHADIRTTETYLRVDAAQ 298


>gi|89147458|gb|ABD62589.1| integrase [uncultured bacterium]
          Length = 164

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 39/61 (63%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           G   ++++      G+    TAH LRHS+ATHLL  G DLR+IQ  LGH  + TT+IYT+
Sbjct: 103 GAVSKWLKNAVGKAGIEKRVTAHVLRHSYATHLLQKGVDLRTIQEALGHSSVKTTEIYTH 162

Query: 301 V 301
           V
Sbjct: 163 V 163


>gi|257125272|ref|YP_003163386.1| integrase [Leptotrichia buccalis C-1013-b]
 gi|257049211|gb|ACV38395.1| integrase domain protein SAM domain protein [Leptotrichia buccalis
           C-1013-b]
          Length = 284

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 127/285 (44%), Gaps = 23/285 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N+L+ L+ E+  S+ TL  Y  D  QF +F+          +   ++   EI ++I   
Sbjct: 4   KNFLEFLKFEKRSSQNTLNGYNRDLTQFFLFVK---------KDFSEIGEKEISSYID-N 53

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +K+   S+ R +S +K+F K+    K+ T+     ++NLK+    P  L  ++   +V
Sbjct: 54  LNKKLRKNSVLRKVSVLKTFYKFCYLNKLITKDPAGIIKNLKREYQPPETLTLEEIKQIV 113

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTLRIQGKGDKI 197
           DN     +        +N  I+ LL   G  ISE L+L  ++I +     ++  GK  K 
Sbjct: 114 DNCPNTPAG------IQNRLIIKLLIVTGAMISEILNLKIKDIENQYDKFIKTLGKNSKY 167

Query: 198 RIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +I  +  S    I  Y ++  P   N N  L +F  IR +      F + ++ + +   +
Sbjct: 168 QIKLIDNSFEIEIKNYLEIYRPKLKNANESLKIFPDIRREK-----FWKNLKIIAQNAKI 222

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             +   H  R+S    L     D+  IQ +LG   ++T +I  NV
Sbjct: 223 EKNVYPHIFRNSLVGILSEANADICIIQEVLGKVNITTAKIKKNV 267


>gi|229170806|ref|ZP_04298420.1| Integrase-recombinase [Bacillus cereus AH621]
 gi|228612644|gb|EEK69853.1| Integrase-recombinase [Bacillus cereus AH621]
          Length = 314

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 70/153 (45%), Gaps = 10/153 (6%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           N AIL  L   G RI E  +   +++  D +  LR++GKGDK+R + +   + + I E  
Sbjct: 142 NYAILLALASTGARIQELCTARVKDLHYDGKYWLRVKGKGDKVRELFIPEYLYQCISEMR 201

Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266
               F   L+   + PLF   RG   NP      +  + +   L          TAHT R
Sbjct: 202 RRRGFQTILDRGDECPLFVNQRGNFYNPKTLSNQVTDMIKKTNLDFLKYRENPVTAHTFR 261

Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
           H+FA   +  G  DL  +   LGH  + TT+IY
Sbjct: 262 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 294


>gi|94499085|ref|ZP_01305623.1| site-specific recombinase, phage integrase family protein
           [Oceanobacter sp. RED65]
 gi|94428717|gb|EAT13689.1| site-specific recombinase, phage integrase family protein
           [Oceanobacter sp. RED65]
          Length = 319

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 99/221 (44%), Gaps = 52/221 (23%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           ++   LP+ L +++   +++            +  R+  I+ L+YG GLRISE L L  +
Sbjct: 97  QRQRRLPQVLTQQEVKRIINE-----------LGERDRLIVSLMYGSGLRISECLRLRVK 145

Query: 180 NIMDDQSTLR-IQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +I  +  +L  I GKG K R   L    +  ++  I     L   D NL+   P   G  
Sbjct: 146 DIHFETGSLDVIDGKGGKDRKTILSKNIVGDLQNQIQNSIALQEKD-NLSGLGPSLPGAL 204

Query: 235 GKPLNPGVFQR--------------------YIRQ------LRRYLGLPLST-------- 260
           G+ L P  +++                    + R       +R+ L     +        
Sbjct: 205 GRKL-PNAYRQPAWMFVFPSTTICKHPITGIHCRHHLHETVMRKALAKACKSAGIYNKRI 263

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T HT RHSFAT LL  G D+R++Q +LGH  +STTQIYT+V
Sbjct: 264 TCHTFRHSFATELLRAGRDIRTVQELLGHKDVSTTQIYTHV 304


>gi|89147498|gb|ABD62609.1| integrase [uncultured bacterium]
          Length = 163

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 39/59 (66%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            QR ++      G+    T HTLRHSFATHLL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 104 LQRRVKLAAEEAGIVKRVTCHTLRHSFATHLLEGGYDIRTVQELLGHADVSTTMIYTHV 162


>gi|156937341|ref|YP_001435137.1| phage integrase family protein [Ignicoccus hospitalis KIN4/I]
 gi|156566325|gb|ABU81730.1| phage integrase family protein [Ignicoccus hospitalis KIN4/I]
          Length = 604

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 126/283 (44%), Gaps = 33/283 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ +E+  G +K TL+SY    + FL          +  + + ++ Y +   ++ KR
Sbjct: 19  EEYLEFMEVS-GANKKTLKSYRSALKDFLSV--------VGDKRVGEVKYEDYVKWVRKR 69

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +    RS+K+     ++ L Y          N L    L+   ++P+   +       
Sbjct: 70  MKEGF-PRSVKKDKRAQQTTLHYYS----LFVRNFLKWLGLEGLPAVPKPRKDSVEALKP 124

Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           + V  LL  ++E    D  +  I+ LL   GLR SEAL++T   +   +  + ++GK  K
Sbjct: 125 EEVAALLQAAYE----DPIDFLIVSLLLETGLRASEALNVTLDKVDFRRRQIAVRGKYGK 180

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+V   P   +A+   +             P  R +   PL+     + +++L +  GL
Sbjct: 181 ERVVFYGPLTEEALRRAWSYI---------APSGRLV---PLSYQALYKRLKRLAKKAGL 228

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           P      H LRH+FAT  L  G  L ++Q +LGH  + TTQIY
Sbjct: 229 PEHKLHPHALRHTFATEALRRGMSLPAVQRLLGHSDIKTTQIY 271


>gi|238922492|ref|YP_002936005.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|238925709|ref|YP_002939226.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|238874164|gb|ACR73871.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|238877385|gb|ACR77092.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|291525374|emb|CBK90961.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 282

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 127/282 (45%), Gaps = 37/282 (13%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R L + ++  Y+     FL ++  + EE         L+  ++R F+  ++   +   +L
Sbjct: 16  RNLKERSINCYKNYVSYFLNYMEKHPEE---------LTCQDVRDFLLAKKDNGLKATTL 66

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
               S I+ F +           N+L++  L    ++PR + E +  T+     L T   
Sbjct: 67  NLYNSAIRFFYR-----------NVLHV--LWDDITVPRMIIEHKLPTV-----LSTDEI 108

Query: 149 TKWIDARNS----AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            + +DA +     A+   +Y  G+R+SE + L   +I      + ++   +++    +L 
Sbjct: 109 DRLLDATDDLKYKAMFATMYSSGMRVSEVIHLHYDDISRTNMQIHVRDTKNRMDRYTILS 168

Query: 205 SVRKAIL-EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
               A+L EY+    F       +       G+ L     ++ IR+     GL    T H
Sbjct: 169 ERNLALLTEYW----FRKGRPKGILFPNQFTGQYLTVSTLEQVIRRSASAAGLS-GVTPH 223

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            LRHSFATHL+  G + R+IQ++LGH    +T++Y +V++K+
Sbjct: 224 CLRHSFATHLMEQGVEQRNIQALLGHRDPKSTEVYLHVSNKS 265


>gi|89147530|gb|ABD62625.1| integrase [uncultured bacterium]
          Length = 163

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 232 GIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
           GI+ +  ++    QR I+Q      +      HTLRHSFATHLL  G D+R IQ +LGH 
Sbjct: 92  GIKARHHVHETAIQRAIKQATYLAKINKHIGPHTLRHSFATHLLERGRDIREIQELLGHA 151

Query: 291 RLSTTQIYTNV 301
            +STTQIYT+V
Sbjct: 152 NVSTTQIYTHV 162


>gi|89147496|gb|ABD62608.1| integrase [uncultured bacterium]
          Length = 163

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 39/58 (67%)

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           QR I+   R        + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 105 QRAIKMALRKADFIKPASTHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|89147557|gb|ABD62638.1| integrase [uncultured bacterium]
          Length = 163

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 41/64 (64%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           ++    QR + +  R   +P   + H LRHSFATHLL  G D+R++Q +LGH  +STT I
Sbjct: 99  VHENALQRAVTEGTRVAEIPKRVSCHALRHSFATHLLEAGYDIRTVQELLGHSDVSTTMI 158

Query: 298 YTNV 301
           YT+V
Sbjct: 159 YTHV 162


>gi|291524801|emb|CBK90388.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 349

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 130/299 (43%), Gaps = 42/299 (14%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           FE +K     L+  +I      L  Q    D  ++L +L +Y ++ +             
Sbjct: 56  FEYMKSANPSLRKYDIRDYPISLLDQISPSDIEEYLFYLKYYEKDGVV------------ 103

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLK-YLKKRKITTE-SNILNMRNLKKSNSLPRAL 129
                        +R +KR L+ +++F   Y +K  I T  ++ + +  + + N +   L
Sbjct: 104 ---------HTNDERGIKRKLASLRTFYNFYFRKEFIDTNPASKVTLPKIHEKNII--RL 152

Query: 130 NEKQALTLVDNVLLHTS--------HETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           +  +   L+D V    S        HE   +  R+ A++ LL G G+R+SE + L   ++
Sbjct: 153 DTDEVAQLLDEVESGDSLSKNQQRFHEKTKV--RDLALMTLLLGTGIRVSECVGLDMDDV 210

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKP 237
               + +++  KG    IV     VR A+L Y++    + P + + N    LF  ++ K 
Sbjct: 211 DFKNNGIKVHRKGGADVIVYFGDEVRDALLSYWEERSIITPAEGHAN---ALFLSLQRKR 267

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           ++    +  +++  R +    + T H LR ++ T L    GD+  +  +LGH  ++TT+
Sbjct: 268 ISVRSVENLVKKYSRLVTTVKNITPHKLRSTYGTTLYQETGDIYLVADVLGHKDVNTTR 326


>gi|282878602|ref|ZP_06287378.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281299273|gb|EFA91666.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 418

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 144/318 (45%), Gaps = 51/318 (16%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + + I+R L    L++Y+      L  L  Y ++K  +  I  LS  + +AFI       
Sbjct: 135 ERIGIDRALKTFKLRTYQ------LSLLREYLQKKYKVSDI-PLSQLD-KAFIEGFEYYL 186

Query: 83  IGDRSLKRS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             DR LKRS     LS +KS ++   K+ +      L   + ++    PR++++ Q   +
Sbjct: 187 SIDRKLKRSSVSSALSTLKSIVRMAVKKGVLDFYPFLGY-SYERPKGEPRSISQDQLQRI 245

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +D        E +W + R    L++ + C  GL IS+  +L  +NI+ ++  L I+GK  
Sbjct: 246 ID-------LEIEWENYRIVRDLFV-FSCFSGLAISDVRNLREENIVLEEGELCIKGKRM 297

Query: 196 KIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-----PLNPGVFQRYI 247
           K +    V +LP    AI+E Y                RG R       P N  +    +
Sbjct: 298 KTKTPYRVQVLPPAW-AIMERY----------------RGKRAGFVFDVPTN-DIIHNGM 339

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
             ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQ+Y  V+S+  
Sbjct: 340 HYIQRSIGMKSPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERI 399

Query: 307 GDWMMEIYDQTHPSITQK 324
              M ++  +   + T K
Sbjct: 400 HREMQKVQQRIQDTFTLK 417


>gi|258515633|ref|YP_003191855.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257779338|gb|ACV63232.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 323

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 110/254 (43%), Gaps = 17/254 (6%)

Query: 49  FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT 108
           F  F T + + I  I   +  E   ++   +       ++   +  ++ F + L +++  
Sbjct: 55  FKKFLTTQAVNISLISAKTLDE---YVKSMKNADKKKNTINGRVKTLRVFFRILNEKEYI 111

Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
            ++  L ++ ++         +++Q      N LL     T +   R+  I+ +L   G+
Sbjct: 112 PDNPALGLKTIRGPKPEIFPFSDEQI-----NALLAQPDRTTFAGLRDYMIMQILLDTGV 166

Query: 169 RISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           R+ E  ++   ++  +  T RI   +GKG+K R V      R+ I++Y  +     +L+ 
Sbjct: 167 RLEELCNIKYSDV--NLKTCRILVRKGKGNKSRTVLFGSETRRTIMKYLKVTG---DLDA 221

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQ 284
           +  L     G PL     Q  I       GL  +  + HT RH+FA   L NGGD   ++
Sbjct: 222 ETNLILNQDGNPLKQRSVQDRISLHASAAGLKGVRPSPHTFRHTFAKKFLMNGGDPYVLR 281

Query: 285 SILGHFRLSTTQIY 298
            +LGH  +ST  IY
Sbjct: 282 DLLGHNSMSTVIIY 295


>gi|229170493|ref|ZP_04298144.1| Site-specific recombinase, phage integrase [Bacillus cereus AH621]
 gi|228612963|gb|EEK70137.1| Site-specific recombinase, phage integrase [Bacillus cereus AH621]
          Length = 352

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 136/310 (43%), Gaps = 55/310 (17%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI-- 83
           ++  G ++ TL  Y+ + R F  FL +    K   + I  ++   IR ++   + +KI  
Sbjct: 40  KVAEGRAERTLHQYKENFRYFTYFLDY----KGLSRNIDTITTDVIRNYVVFMKNEKIQF 95

Query: 84  GDRSLKRS---------------LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            D + K S               L  ++   ++L   ++  ESN   M+ +K  N  P+ 
Sbjct: 96  EDHNYKPSDCKKVGLSPSTINTRLKTLRVMFRFLIDEELM-ESN--PMKQVKDVNE-PQ- 150

Query: 129 LNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             E+ A+  VD +  LL   ++  + D RN  I+ LL    LRISEALSLT  +I  D S
Sbjct: 151 --EEIAVLTVDELRRLLDVPNKRSYSDFRNYVIMNLLLDTFLRISEALSLTVNDI--DLS 206

Query: 187 TLRIQ-----GKGDKIRIVP-------LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           T  I       K  K RIVP       LL  + K   E+     F  N   Q+       
Sbjct: 207 TKVITVRATVAKSRKARIVPIKNTTANLLKDLIKENEEFETDHVFITNYEEQM------- 259

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
               +   F++ ++   +  G+  +   H  RH+ AT  L  GGD+R +Q +LGH  L  
Sbjct: 260 ----DRNHFRKRLKGYAKETGITKNVHPHLFRHTGATMFLEAGGDIRHLQMLLGHADLRM 315

Query: 295 TQIYTNVNSK 304
              YT+++ +
Sbjct: 316 VMRYTHLSKQ 325


>gi|283797946|ref|ZP_06347099.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
 gi|291074412|gb|EFE11776.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
 gi|295091862|emb|CBK77969.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 350

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 106/222 (47%), Gaps = 13/222 (5%)

Query: 85  DRSLKRSLSGIKSFLKYL--KKRKITTESNILNMRNLKKSNSLPRALNE-KQALTLVDNV 141
           +R L R +S +KSF  Y    +R  T  + ++ +  L +   +   ++E  + L LV++ 
Sbjct: 109 ERGLTRKMSSLKSFYNYFFRNERIKTNPAALVKLPKLHEKEIIRLEIDEVARLLDLVEDG 168

Query: 142 LLHTSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              T  +  + +    R+ A++ LL G G+R+SE + L   ++  +   +RI  KG K  
Sbjct: 169 QELTERQKAYHEKTKIRDLALMTLLLGTGIRVSECIGLNLNDVDFNVDGIRIHRKGGKEV 228

Query: 199 IVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           I+     V +A+  Y +    + P   N   +  LF  ++ K +N    +  +++  R +
Sbjct: 229 IIYFGDEVEQALRAYLEERKKMIPAPGN---EEALFLSMQKKRMNVRSVENLVKKYSRIV 285

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
                 T H LR ++ T+L    GD+  +  +LGH  ++TT+
Sbjct: 286 TPLKKITPHKLRSTYGTNLYRETGDIYLVADVLGHADVNTTK 327


>gi|165873378|ref|ZP_02217977.1| integrase/recombinase, putative [Bacillus anthracis str. A0488]
 gi|167636799|ref|ZP_02395082.1| integrase/recombinase, putative [Bacillus anthracis str. A0442]
 gi|167642097|ref|ZP_02400319.1| integrase/recombinase, putative [Bacillus anthracis str. A0193]
 gi|170689746|ref|ZP_02880916.1| integrase/recombinase, putative [Bacillus anthracis str. A0465]
 gi|170709562|ref|ZP_02899962.1| integrase/recombinase, putative [Bacillus anthracis str. A0389]
 gi|177656393|ref|ZP_02937286.1| integrase/recombinase, putative [Bacillus anthracis str. A0174]
 gi|190569558|ref|ZP_03022419.1| integrase/recombinase, putative [Bacillus anthracis Tsiankovskii-I]
 gi|225871653|ref|YP_002753011.1| integrase/recombinase, putative [Bacillus cereus 03BB102]
 gi|227811599|ref|YP_002811610.1| integrase/recombinase, putative [Bacillus anthracis str. CDC 684]
 gi|229599814|ref|YP_002860839.1| integrase/recombinase, putative [Bacillus anthracis str. A0248]
 gi|254687863|ref|ZP_05151719.1| integrase/recombinase, putative [Bacillus anthracis str.
           CNEVA-9066]
 gi|254739157|ref|ZP_05196859.1| integrase/recombinase, putative [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744957|ref|ZP_05202634.1| integrase/recombinase, putative [Bacillus anthracis str. Kruger B]
 gi|254756553|ref|ZP_05208582.1| integrase/recombinase, putative [Bacillus anthracis str. Vollum]
 gi|254762487|ref|ZP_05214327.1| integrase/recombinase, putative [Bacillus anthracis str. Australia
           94]
 gi|301068214|ref|YP_003786985.1| integrase/recombinase [Bacillus anthracis CI]
 gi|164710753|gb|EDR16331.1| integrase/recombinase, putative [Bacillus anthracis str. A0488]
 gi|167509780|gb|EDR85204.1| integrase/recombinase, putative [Bacillus anthracis str. A0193]
 gi|167527725|gb|EDR90564.1| integrase/recombinase, putative [Bacillus anthracis str. A0442]
 gi|170125523|gb|EDS94450.1| integrase/recombinase, putative [Bacillus anthracis str. A0389]
 gi|170666121|gb|EDT16914.1| integrase/recombinase, putative [Bacillus anthracis str. A0465]
 gi|172079753|gb|EDT64870.1| integrase/recombinase, putative [Bacillus anthracis str. A0174]
 gi|190559337|gb|EDV13361.1| integrase/recombinase, putative [Bacillus anthracis Tsiankovskii-I]
 gi|225785568|gb|ACO25786.1| putative integrase/recombinase [Bacillus cereus 03BB102]
 gi|227007973|gb|ACP17715.1| integrase/recombinase, putative [Bacillus anthracis str. CDC 684]
 gi|229269433|gb|ACQ51069.1| integrase/recombinase, putative [Bacillus anthracis str. A0248]
 gi|300379300|gb|ADK08203.1| integrase/recombinase, putative [Bacillus cereus biovar anthracis
           str. CI]
          Length = 347

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 124/287 (43%), Gaps = 41/287 (14%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T + Y  D   FL ++      K TI  I++LS+ E+  +  +  ++K    +L+R 
Sbjct: 62  SERTKKLYLHDLSHFLRYI------KETIGIIKELSHNEMEIYFYQL-SKKYAATTLRRK 114

Query: 92  LSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
            + ++ FLKY+      ++  S+ L   ++KK   + R L  ++      N +L T  +T
Sbjct: 115 KTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLFPEEV-----NEILDTLKKT 169

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPS 205
            +      ++ +LL   GLRI E  +    +++   S     LR+ GKG+K R V +   
Sbjct: 170 NFF---MYSLFFLLTTTGLRIEEVANAKWADLVFHPSLNVYLLRVVGKGNKTREVRIFED 226

Query: 206 VRKAILEYYDLCPF--------DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           V        DLC          +L+ +          G         +Y+ +      LP
Sbjct: 227 VLN------DLCHLRQLRKQKSELDASSSSAFLPKADGSHYRADYLSKYVAEKIEETNLP 280

Query: 258 L------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                    T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y
Sbjct: 281 FLRYRKHRITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERY 327


>gi|89147528|gb|ABD62624.1| integrase [uncultured bacterium]
          Length = 163

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 45/69 (65%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R   L+  + QR ++   R  G+  + + H+ RHSFATHLL NG D+R++Q +LGH  +
Sbjct: 94  VRRHHLSEQIVQRAVKAALRTAGVRKNGSCHSFRHSFATHLLENGYDIRTVQELLGHKDV 153

Query: 293 STTQIYTNV 301
            TT IYT+V
Sbjct: 154 RTTMIYTHV 162


>gi|89147588|gb|ABD62653.1| integrase [uncultured bacterium]
          Length = 163

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 43/64 (67%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
            + G   R ++   +  G+    +AHTLRHSFATH++  G D+R++Q +LGH  ++TTQI
Sbjct: 99  FDDGTLSRSLKSACKRAGIVKPVSAHTLRHSFATHIIEAGYDIRTVQELLGHKDVATTQI 158

Query: 298 YTNV 301
           YT+V
Sbjct: 159 YTHV 162


>gi|85707316|ref|ZP_01038400.1| putative integrase/recombinase [Roseovarius sp. 217]
 gi|85668197|gb|EAQ23074.1| putative integrase/recombinase [Roseovarius sp. 217]
          Length = 335

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 130/292 (44%), Gaps = 26/292 (8%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI-GDR 86
           +RG S  + ++Y    +    F A       +  +I QL    I AF+    T +  G  
Sbjct: 19  QRGFSAHSSETYAHAFKLLFQFAARRVGSSPSQLSIEQLDAPLILAFLDHLETDRGNGAT 78

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPRALNEKQALTLVDNVLL 143
           S    L+ IKSF+++++ +     + +  +R +   +  N L + L++ +        +L
Sbjct: 79  SRNARLAAIKSFMRFVEYQYPALLAQVAQIRAIPTKRCENKLVQHLSKDEV-----QAVL 133

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLRIQGKGDKIRIVPL 202
           +    T  + AR+ A+++L +  GLR+SE +     +++  Q+ +L ++GKG K R  PL
Sbjct: 134 NAPDVTTRLGARDRAMMHLCFAGGLRVSELVGAALTDLVLGQAPSLLVRGKGRKHRHFPL 193

Query: 203 ---LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ----RYIRQLRRYLG 255
                S  +A L    L P          +F    G+ +    F+    +++ +  ++  
Sbjct: 194 WKQTASDLRAWLAVRGLTPAP-------EIFVNAEGRAMTRSGFEYVLDKHVVKASQHCP 246

Query: 256 --LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
                S + H LRHS A  +L    D+R +   LGH  + TT+ Y  V++  
Sbjct: 247 SLAGRSVSPHQLRHSCAVIMLEATRDIRKVALWLGHADIRTTETYLRVDAAQ 298


>gi|229002464|ref|ZP_04160553.1| Integrase/recombinase [Bacillus mycoides Rock3-17]
 gi|228758597|gb|EEM07731.1| Integrase/recombinase [Bacillus mycoides Rock3-17]
          Length = 304

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 130/286 (45%), Gaps = 23/286 (8%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           I++G S+ T+ SY  D + F   +    +  +    I++ +    R  ++ R  + +   
Sbjct: 10  IDKGKSQNTVLSYINDLQIFFQEMRLNPDSYVISNDIKKWT----RNMLNPREGKTLSVS 65

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA---LNEKQALTLVDNVLL 143
           ++ R L+ ++S+  + ++ +    + + ++++LK ++        L EK+   L+D +  
Sbjct: 66  TINRRLNTLRSYFSWAEREQYIKVNPMRDIKDLKVADEEYEKIMWLTEKEFEALLDRMRK 125

Query: 144 H------TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +       + E K+   R+ AI+Y+L   GLR+ E  SL   +I  D   +R+ GKG K+
Sbjct: 126 YPVKTRGVNPEEKY--RRDRAIIYILTYAGLRVEELSSLKITDIDIDFKKIRVIGKGTKV 183

Query: 198 RIVPLLPSVRKAILEYYDL---CPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRY 253
           R VP+   +   +L++         D  +  Q P +F   R +  +    Q  I     Y
Sbjct: 184 RTVPMSNFLYNEVLDWLQFRNKIAKDKEIVNQSPYVFYSQRSEKFSIRGIQAMIEN---Y 240

Query: 254 LGLPLSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLSTTQIY 298
                  T H  RH+F   +L +   D+  ++ + GH  +STT  Y
Sbjct: 241 STSDKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSHISTTTRY 286


>gi|288920327|ref|ZP_06414639.1| integrase family protein [Frankia sp. EUN1f]
 gi|288348275|gb|EFC82540.1| integrase family protein [Frankia sp. EUN1f]
          Length = 465

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK-NGGDWMMEIYDQT 317
             + H LRHSFA HLL  G D+R +Q +LGH  +STTQIYT  N+     D + E+Y  +
Sbjct: 350 GASPHVLRHSFAAHLLDRGADVRVVQELLGHASVSTTQIYTLKNTDLTTMDHLREVYTSS 409

Query: 318 HP 319
           HP
Sbjct: 410 HP 411



 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 18/165 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY---TEIRAFISK 77
           +L +++ ERGL++ ++ +Y  D R++         E ++ + IR L      +I  F   
Sbjct: 57  YLDHVDGERGLARNSVLAYRRDLRRY--------HEHLSGRGIRSLGAVGEAQIAQFAIT 108

Query: 78  RRT-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALN 130
            RT       +   S+ R L  ++S  +Y  +    +   S  +      +       ++
Sbjct: 109 LRTGDESHPPLAPASVARMLVAVRSLHRYAAREGDVSADVSGPVRPAAPPRRPPRALTVD 168

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +  AL L                 R++A+L LLYG G RISEA+ 
Sbjct: 169 QVTALILQAGAAAGADQSGPARRLRSAALLELLYGTGARISEAVG 213


>gi|77734441|emb|CAJ26227.1| integerase-recombinase [Thermotoga naphthophila RKU-10]
          Length = 190

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 19/133 (14%)

Query: 158 AILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           AI  +L   G+R+SE ++L+  +I +++ + +RI+GKG+K RI+ +    ++ + E  + 
Sbjct: 76  AIFKVLANTGMRVSEIVNLSVHDISVNETARIRIKGKGNKERIINI---SKELVEELMNS 132

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
             F+     + P  R I          QR +++  R  G+    T H  RHSFA  L+  
Sbjct: 133 GFFE-----KKPSVRSI----------QRAVKRYARKAGIKKKVTPHIFRHSFAVALIER 177

Query: 277 GGDLRSIQSILGH 289
           G  L  IQ++LGH
Sbjct: 178 GVPLNKIQALLGH 190


>gi|323138768|ref|ZP_08073833.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322396015|gb|EFX98551.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 335

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 132/297 (44%), Gaps = 32/297 (10%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF---ISKRR 79
           +++  +RG S  + ++Y    R  L F A   + + +  T+  +    + AF   I + R
Sbjct: 14  EHMPQQRGYSLHSCEAYATCFRLLLTFAADRLKTRPSRLTLEAIDAAMVLAFLAHIEQDR 73

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPRALNEKQALT 136
                 R+L+  L+ IK+F++Y++ ++ +    +  +  +   +    L R L   +  T
Sbjct: 74  GNSPATRNLR--LAAIKAFMRYVELQRPSALEQVAQIDAIPGKRHDQKLIRHLTTAEVRT 131

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGD 195
           ++D     T         R+ A+L+L +  GLR+SE + LT   + +    ++ + GKG 
Sbjct: 132 ILDAPDTSTRSGI-----RDRAMLHLCFAAGLRVSELVGLTMNGVTLHPNPSVLVFGKGR 186

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYI------- 247
           + R +PL     + +  +       +  N   P LF   +G  +    F+ YI       
Sbjct: 187 RERSLPLWKETARDVRAW-----LAVRGNPPTPELFVNAKGMAMTRAGFE-YILEKHGAI 240

Query: 248 --RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             ++    +G  LS   H LRHS A  +L    D+R +   LGH  + TT+IY  ++
Sbjct: 241 AAKKCPTLVGRTLSP--HLLRHSCAVLMLQATRDIRKVALWLGHADIRTTEIYLGMD 295


>gi|89147576|gb|ABD62647.1| integrase [uncultured bacterium]
 gi|89147610|gb|ABD62664.1| integrase [uncultured bacterium]
          Length = 163

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 41/61 (67%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           G+ Q  +++     G+      H+LRHSFATHLL NG D+R++Q +LGH  +STT IYT+
Sbjct: 102 GILQNALKRAVDAAGIVKRANCHSLRHSFATHLLGNGYDIRTVQELLGHKDVSTTMIYTH 161

Query: 301 V 301
           V
Sbjct: 162 V 162


>gi|295101278|emb|CBK98823.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 327

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 119/253 (47%), Gaps = 29/253 (11%)

Query: 61  QTIRQLSYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           + +RQ++  ++R +++    +RR+ K+   +++R LS   SF  +L+      +S +  +
Sbjct: 86  KAVRQITTDDLRRYLTNYQVQRRSSKVTIDNIRRILS---SFFSWLEDEDFIVKSPVRRI 142

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             +K +  +     ++    + DN             AR+ A++ LL   G+R+ E ++L
Sbjct: 143 HKVKTAKVVKDTYTDEVLELMRDNC----------TTARDLAMIDLLASSGMRVGELVTL 192

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRG 232
             ++I  ++    + GKG+K R+V      +  +  Y     D  P  L ++++ P  R 
Sbjct: 193 NREDINFNERECVVIGKGNKERLVYFDARTKIHLQNYLEGRTDENPA-LFVSLKAPFDRL 251

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           + G     GV  R +R+L + L +P     H  R + AT  +  G  +  +Q +LGH ++
Sbjct: 252 MIG-----GVETR-LRELGKRLNIP-KVHPHKFRRTLATTAIDKGMPIEQVQQLLGHQKI 304

Query: 293 STTQIYTNVNSKN 305
            TT  Y  V  +N
Sbjct: 305 DTTMHYAMVKQQN 317


>gi|223369844|gb|ACM88791.1| integrase [uncultured bacterium]
          Length = 163

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 41/64 (64%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+P    + +R      G+    ++HT RHSFATHLL  G D+R+IQ +LGH  +STT I
Sbjct: 99  LDPNTIDKALRVAVAKAGIAKRVSSHTFRHSFATHLLQRGQDIRTIQDLLGHKDVSTTMI 158

Query: 298 YTNV 301
           YT+V
Sbjct: 159 YTHV 162


>gi|206578539|ref|YP_002237615.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
 gi|206567597|gb|ACI09373.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
          Length = 338

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 134/304 (44%), Gaps = 40/304 (13%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L  ER LS  T +SY    R  L F +    +      +  LS   IR F+ +   +
Sbjct: 16  LEYLIGERNLSVNTQKSYRDMLRLLLPFASEAAGKATDKLLVEDLSEGCIRNFLIRLGDE 75

Query: 82  KIGDRSLK-RSLSGIKSFLKYLKKR--KITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +    S + + L+GI+S  +++     + T     L    L+KS++   +  EK  +   
Sbjct: 76  RYCSASTRNQRLAGIRSLARFIAMHAPEYTDWYGRLKSIPLRKSSTALISYLEKDEM--- 132

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MD------DQSTLRIQ 191
            + LL           R+ A+L  LY  G R  E   +   ++ M+      + S++ I 
Sbjct: 133 -DALLSAPDVDTAQGRRDHAVLLFLYNTGARADEVAHVKMGDLNMNIAAGHYNNSSVVIH 191

Query: 192 GKGDKIRIVPLLPSVRK--AILEYYDLCPFDLNLNIQ-LPLFR-GIRGKPLN-------- 239
           GKG+++R  PL P   +   +L    L    L +N Q  PL R GIR   +         
Sbjct: 192 GKGNRLRRCPLWPETARLLQLLGRDRLSQETLFVNRQNRPLTRFGIRDVVVRNVAVAAAS 251

Query: 240 -PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            P + Q+ +             + HT+RH+ ATHLL  G D+ +I++ LGH  L+TT IY
Sbjct: 252 VPSLSQKRV-------------SPHTIRHTTATHLLRAGVDINTIRAWLGHVSLATTLIY 298

Query: 299 TNVN 302
             V+
Sbjct: 299 AEVD 302


>gi|89147488|gb|ABD62604.1| integrase [uncultured bacterium]
          Length = 163

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 2/90 (2%)

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           E++ + P   NL++  P    +R         Q+ ++    + G+    + H LRHSFAT
Sbjct: 75  EWFWVFPSS-NLSVD-PRANAVRRHHAGESAVQKAVKVATGHAGIEKKVSCHVLRHSFAT 132

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           HLL +G D+R++Q +LGH  + TT+IYT+V
Sbjct: 133 HLLESGRDIRTVQELLGHSDVKTTEIYTHV 162


>gi|77734443|emb|CAJ26228.1| integerase-recombinase [Thermotoga sp. RQ2]
          Length = 190

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 19/133 (14%)

Query: 158 AILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           AI  +L   G+R+SE ++L+  +I +++ + +RI+GKG+K RI+ +    ++ + E  + 
Sbjct: 76  AIFKVLANTGMRVSEIVNLSVHDISVNETARIRIKGKGNKERIINI---SKELVEELMNS 132

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
             F+     + P  R I          QR +++  R  G+    T H  RHSFA  L+  
Sbjct: 133 GFFE-----KKPSVRSI----------QRAVKRYARKAGIKKKVTPHIFRHSFAVALIER 177

Query: 277 GGDLRSIQSILGH 289
           G  L  IQ++LGH
Sbjct: 178 GVPLNKIQALLGH 190


>gi|54027830|ref|YP_122070.1| putative recombinase [Nocardia farcinica IFM 10152]
 gi|54019338|dbj|BAD60706.1| putative recombinase [Nocardia farcinica IFM 10152]
          Length = 311

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 100/245 (40%), Gaps = 18/245 (7%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           I  ++   +R F+S      +   + KR  + + +F ++  +  +   + +  +  +   
Sbjct: 55  IDGVTVAAVRGFLSG--IADLAPATRKRKRAAVAAFCRWAVRHDLLAANPMDKVDTITVP 112

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNI 181
            +LPR         +   +      +   +D  R+  +    Y CG R SE   L  ++ 
Sbjct: 113 KTLPRPAPAADIAKVFAAICARRPRKDVALDVLRDRVLFETAYVCGARASEVCELYVEDF 172

Query: 182 ---MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI---RG 235
              +DD+  +R+ GKG  +R V L      A+L  Y     D       P+FR     RG
Sbjct: 173 DLRLDDEH-VRLHGKGGTVRTVLLDDRGYVAMLRLY----LDRTGYTAGPMFRASINGRG 227

Query: 236 KPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            PL+   +     +  RY     +    H LRHS AT L++ G  +  ++  LGH    T
Sbjct: 228 GPLS---YSAAHHRWSRYCAAAGVDIDIHQLRHSHATELINAGVSIEVVRKRLGHASTET 284

Query: 295 TQIYT 299
           TQIY 
Sbjct: 285 TQIYA 289


>gi|30908738|gb|AAP37601.1| IntI [uncultured bacterium]
          Length = 161

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 38/58 (65%)

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           QR +RQ  R   L    T H LRHSFATHLL  G D+R++Q +LGH  + TT IYT+V
Sbjct: 104 QRAVRQAARDAKLHKPVTPHVLRHSFATHLLQAGYDIRTVQELLGHKDVQTTMIYTHV 161


>gi|89147456|gb|ABD62588.1| integrase [uncultured bacterium]
          Length = 164

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 39/61 (63%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           G   ++++      G+    TAH LRHS+ATHLL  G DLR+IQ  LGH  + TT+IYT+
Sbjct: 103 GAASKWLKNAVGKAGIEKRVTAHVLRHSYATHLLQKGVDLRTIQEALGHSSVKTTEIYTH 162

Query: 301 V 301
           V
Sbjct: 163 V 163


>gi|77734435|emb|CAJ26219.1| integerase-recombinase [Thermotoga sp. RQ7]
          Length = 190

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 19/133 (14%)

Query: 158 AILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           AI  +L   G+R+SE ++L+  +I +++ + +RI+GKG+K RI+    +V K ++E    
Sbjct: 76  AIFKVLANTGMRVSEIVNLSVHDISVNETARIRIKGKGNKERII----NVSKELVEEL-- 129

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
              +     + P  R I          QR +++  R  G+    T H  RHSFA  L+  
Sbjct: 130 --MNSGFFEKKPSVRSI----------QRAVKRYARKAGIKKKVTPHIFRHSFAVALIER 177

Query: 277 GGDLRSIQSILGH 289
           G  L  IQ++LGH
Sbjct: 178 GVPLNKIQALLGH 190


>gi|114566275|ref|YP_753429.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337210|gb|ABI68058.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 337

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 135/303 (44%), Gaps = 34/303 (11%)

Query: 19  QNW-LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           QN+ L  L  +RG    T+ SY  DT + L        +K++   +  +S T +  F+  
Sbjct: 11  QNYFLSYLISQRGYGNNTVASYR-DTFKLLFMFLESDGKKLSKLKLTDISQTCVLQFLEW 69

Query: 78  RRTQK---IGDRSLKRSLSGIKSFLKYLKKRKITTE---SNILNMRNLKKSNSLPRALNE 131
             T++   +  R+L+  L+ +KSF  Y+           ++I+N+   +     P  L E
Sbjct: 70  AETERHNSVSTRNLR--LTVLKSFFGYVLSTSPEFSGQCTDIINIPAKRVEKKPPLYLTE 127

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-LRI 190
            +       +LL+          R+ AIL LLY    R+ E ++L   ++   +   + +
Sbjct: 128 SET-----KLLLNAPDRNSREGIRHMAILTLLYDSACRVQELINLNVADVTIGRCCKVFV 182

Query: 191 QGKGDKIRIVPLLPSVRKAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLNPG----VF 243
           +GKG K R +P+     K +  Y   Y L P ++       LF    G  L       + 
Sbjct: 183 KGKGSKYREIPIFGETGKILERYINAYGLKPGEV-------LFTNRSGGRLTRAGVSYIM 235

Query: 244 QRYIRQLR-RY---LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            +Y + L+ RY       LS + H +RHS ATHL++   ++ +++  LGH  + TTQ+Y 
Sbjct: 236 NKYKKILQERYANRFNSNLSLSPHLMRHSKATHLVNENVNIYNVRDFLGHTSVITTQVYL 295

Query: 300 NVN 302
             N
Sbjct: 296 TSN 298


>gi|218133860|ref|ZP_03462664.1| hypothetical protein BACPEC_01749 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991235|gb|EEC57241.1| hypothetical protein BACPEC_01749 [Bacteroides pectinophilus ATCC
           43243]
          Length = 248

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 116/252 (46%), Gaps = 27/252 (10%)

Query: 61  QTIRQLSYTEIRAFI----SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           ++I+ +   +IR ++    +K+++ K+   +++R LS   SF  +L+      +S +  +
Sbjct: 7   KSIKYIVTDDIRCYLTEYQAKKKSSKVTIDNIRRILS---SFFSWLEDEDYILKSPVRRI 63

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             +K   ++    +++    + DN            + R+ A++ +L   G+R+ E + L
Sbjct: 64  HKVKTGTNIKETYSDEALELMRDNC----------TELRDLAMIDMLASTGMRVGEMVLL 113

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD---LNLNIQLPLFRGI 233
             ++I  ++    + GKGDK RIV      +  +  Y +    D   L +++Q P  R  
Sbjct: 114 NREDIDFNERECVVFGKGDKERIVYFDARTKIHLQNYLNSRKDDNPALFVSLQSPHNR-- 171

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
               +N G  +  +RQL + LGL      H  R + AT  +  G  +  +Q +LGH R+ 
Sbjct: 172 ----MNIGGIEVRLRQLGKRLGLN-KVHPHKFRRTLATMAIDKGMPIEQLQQLLGHRRID 226

Query: 294 TTQIYTNVNSKN 305
           TT  Y  V   N
Sbjct: 227 TTLQYAMVKQSN 238


>gi|319653998|ref|ZP_08008091.1| hypothetical protein HMPREF1013_04710 [Bacillus sp. 2_A_57_CT2]
 gi|317394320|gb|EFV75065.1| hypothetical protein HMPREF1013_04710 [Bacillus sp. 2_A_57_CT2]
          Length = 359

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 16/164 (9%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI+ L+   GLRI+E  +L   ++   +  + +  KG+K + VP     +K I  Y 
Sbjct: 192 RDIAIVSLILSAGLRIAEVSNLDLSDLDLAEEKVYVLRKGEKEQFVPFSSIAKKNIQHYL 251

Query: 215 DL------CPFDLNLNIQLPLFRGIRGKP----LNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           ++       P D     +  LF   + +P    +     Q  I +  +  G P+  +AH 
Sbjct: 252 EIRNVRYNSPKD-----EQALFLTKQQQPYGVRMTKRAMQLMIEKYAKAFGKPM-LSAHK 305

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           LRHS AT       D+ S++  LGH  + TT IYT+V S +  D
Sbjct: 306 LRHSMATRHYQKNKDIASLKDHLGHESIETTMIYTHVLSSDQKD 349


>gi|315637161|ref|ZP_07892383.1| phage integrase family site-specific recombinase [Arcobacter
           butzleri JV22]
 gi|315478528|gb|EFU69239.1| phage integrase family site-specific recombinase [Arcobacter
           butzleri JV22]
          Length = 350

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 75/145 (51%), Gaps = 13/145 (8%)

Query: 166 CGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSV-RKAILEYYDL--CPFD 220
            G+R+SE L+L  ++I   D+   L+I+GKG+K R+V +  S+  K +  + D+  C  D
Sbjct: 204 TGIRVSEILNLRIKDIFKEDNVYMLQIKGKGNKPRVVMIKSSIIEKELQNWLDMRVCNSD 263

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGD 279
           L       L    +G+ L      R +  +    G+      AH LRHSFAT L     D
Sbjct: 264 L-------LVCNQKGERLTQAYISRVVENILISAGIRKEKNGAHMLRHSFATLLYQKHHD 316

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSK 304
           L  +Q  LGH  ++T++IYT+ + +
Sbjct: 317 LILVQEALGHADINTSRIYTHFDKE 341


>gi|89073768|ref|ZP_01160282.1| integrase/recombinase [Photobacterium sp. SKA34]
 gi|89050543|gb|EAR56035.1| integrase/recombinase [Photobacterium sp. SKA34]
          Length = 480

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 115/245 (46%), Gaps = 16/245 (6%)

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLK--KSNSL 125
           + I++F+S R   +  DR    + +   + L+ L+   +    + ++++  L+  K+  L
Sbjct: 222 STIQSFLSDRIDNQSSDRKKTYAPATADNLLRMLRGVAQHAWLAELISVETLERIKAIKL 281

Query: 126 PRALNEKQALTLVDNVLLHTS-----HETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           PR   +     L  + L H S      + K    R++AI +L+Y  GLR +E +++   +
Sbjct: 282 PRGSRQSSGRYLSYSELDHISAITLNQKNKVKALRDNAIFWLMYEAGLRRAEVINVNSFD 341

Query: 181 IMDDQSTLRIQGKGDKIRIVPLL--PSVRKAILEYYDLCPFDLNLNI-----QLPLFRGI 233
           I  ++  LR+ GKG+K R VP      +  A+ ++  +   D N N+      +  ++ +
Sbjct: 342 IDMNRCQLRVVGKGNKERYVPFSRNSDLYNAMAKWLGVRLKDFNPNLPTLFCTINRYQSL 401

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
               L         ++L   LG     + H  RHS AT+LL +G DL  +   +GH  ++
Sbjct: 402 TYMRLTTQTLNDLCKKLN-MLGFSRVVSPHDFRHSVATNLLRSGYDLLLVSKFMGHSSIT 460

Query: 294 TTQIY 298
           TTQ Y
Sbjct: 461 TTQRY 465


>gi|228470648|ref|ZP_04055504.1| transposase [Porphyromonas uenonis 60-3]
 gi|313887085|ref|ZP_07820784.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|228307656|gb|EEK16635.1| transposase [Porphyromonas uenonis 60-3]
 gi|312923496|gb|EFR34306.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 406

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 143/318 (44%), Gaps = 51/318 (16%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + + I+R L    L++Y+      L  L  Y ++K  +  I  LS  + +AFI       
Sbjct: 123 ERIGIDRALKTFKLRTYQ------LSLLREYLQKKYKVSDI-PLSQLD-KAFIEGFEYYL 174

Query: 83  IGDRSLKRS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             DR LKRS     LS +KS ++   K+ +      L   + ++    PR++++ Q   +
Sbjct: 175 SIDRKLKRSSVSSALSTLKSIVRMAVKKGVLDFYPFLGY-SYERPKGEPRSISQDQLQRI 233

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +D        E +W + R    L++ + C  GL IS+  +L  +NI+ ++  L I+GK  
Sbjct: 234 ID-------LEIEWENYRIVRDLFV-FSCFAGLAISDVRNLREENIVLEEGELCIKGKRM 285

Query: 196 KIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-----PLNPGVFQRYI 247
           K +    V +LP    AI+E Y                RG R       P N  +    +
Sbjct: 286 KTKTPYRVQVLPPAW-AIMERY----------------RGKRAGFVFDVPTN-DIIHNGM 327

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
             ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQ+Y  V+S+  
Sbjct: 328 HYIQRNIGMESPLTFHMARHTFASLITLSAGVPIETVSQMLGHTNLRTTQVYAAVSSERI 387

Query: 307 GDWMMEIYDQTHPSITQK 324
              M  +  +   + T K
Sbjct: 388 HREMQNVQQRIQDTFTLK 405


>gi|295840998|dbj|BAJ06875.1| integron integrase intI [uncultured bacterium]
          Length = 292

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 105/242 (43%), Gaps = 68/242 (28%)

Query: 91  SLSGIKSFLKYLK-KRKITTESN-------ILNMRNLKKSN-----SLPRALNEKQALTL 137
           S + +K FL +L  KRK+   S        +   R++ K        +PRA  ++     
Sbjct: 61  SAADVKDFLTFLAVKRKVPASSQNQAFNALLFFFRHVLKKEFEEIKDVPRAKRKR----- 115

Query: 138 VDNVLLHTSHETKWIDARNSAILY-------LLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             N+ +  S E   ID+  SA+ Y       +LYGCGLR+SE +SL  Q++  DQ  L +
Sbjct: 116 --NIPVVLSREE--IDSIISALAYPYDLVVKMLYGCGLRLSECMSLRVQSLNFDQRVLTV 171

Query: 191 Q-GKGDKIRIVP----LLPSVRKAILE-------------YYDLCPFD------LNLNIQ 226
             GKG K R VP    L+P + KA LE             Y     FD       N  I+
Sbjct: 172 HDGKGKKDRAVPLPETLMPEL-KAQLEVVKGVHESDLTEGYAGAFLFDSLGEKYKNAAIE 230

Query: 227 LP---LFRG-----------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           LP    F G            R   L+    Q+ IR+  +   +    +AHT RH+FATH
Sbjct: 231 LPWQWFFPGKTLTFVPEEKEYRRYHLHDSHVQKAIRRAVKKAKITKRASAHTFRHTFATH 290

Query: 273 LL 274
           LL
Sbjct: 291 LL 292


>gi|330720867|gb|EGG99058.1| Integron integrase IntI2 [gamma proteobacterium IMCC2047]
          Length = 144

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 41/63 (65%)

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           QR I    +  G+    T HTLRHSFAT LL  G D+R++Q +LGH  ++TT IYT+V +
Sbjct: 71  QRAIANGAKAAGIMKRCTCHTLRHSFATQLLEAGYDIRTVQELLGHANVATTMIYTHVLN 130

Query: 304 KNG 306
           K G
Sbjct: 131 KGG 133


>gi|146301442|ref|YP_001196033.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146155860|gb|ABQ06714.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 305

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 128/285 (44%), Gaps = 39/285 (13%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF----ISK---RRTQKIGDRSLKRS 91
           Y+    +FLI+L     EK  I +IR+++  E  ++    IS+   R    + ++++K  
Sbjct: 34  YQTAVSEFLIWL-----EKSGINSIRKVTGRESVSYYEHLISRPKHRGNGTLAEKTIKFH 88

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP----RALNEKQALTLVDNVLLHTSH 147
           L  +  F+            N+L    ++K+  +P     + N + AL++ +  +L+   
Sbjct: 89  LFALGLFV-----------LNLLENNQIEKAYYIPSYSGESGNSRNALSVEEIRMLYQHC 137

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
           E         A++   YGCGLR SE  +L  ++I   +  + ++ GKG K R VP+   V
Sbjct: 138 ENDL----QRALISTAYGCGLRRSEIEALNTRDIQLSRGMVIVRDGKGSKRREVPMSDMV 193

Query: 207 RKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNP----GVFQRYIRQLRRYLGLPLS 259
              I +Y     ++        +   F    GK +N      + ++ + Q   Y  +   
Sbjct: 194 AGHIKKYIAEERYEKLKATNRTEDAFFIYDSGKRMNGEYLNSMLKKIVGQTSSYELIQKD 253

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            T H LRHS A+HL+     +  I+  LGH +++TT IY   N +
Sbjct: 254 ITLHCLRHSIASHLMEKNAGIDFIRGFLGHSQINTTYIYAVKNKR 298


>gi|213025044|ref|ZP_03339491.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 74

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 43/59 (72%), Gaps = 4/59 (6%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q HP
Sbjct: 18  SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQHHP 72


>gi|77734437|emb|CAJ26220.1| integerase-recombinase [Thermotoga neapolitana]
 gi|77734439|emb|CAJ26226.1| integerase-recombinase [Thermotoga neapolitana]
 gi|77734447|emb|CAJ26230.1| integerase-recombinase [Thermotoga sp. SG1]
          Length = 190

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 19/133 (14%)

Query: 158 AILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           AI  +L   G+R+SE ++L+  +I +++ + +RI+GKG+K RI+    +V K ++E    
Sbjct: 76  AIFKVLANTGMRVSEIVNLSVHDISVNETARIRIKGKGNKERII----NVSKELVEEL-- 129

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
              +     + P  R I          QR +++  R  G+    T H  RHSFA  L+  
Sbjct: 130 --MNSGFFEKKPSVRSI----------QRAVKRYARKAGIKKKVTPHIFRHSFAVALIER 177

Query: 277 GGDLRSIQSILGH 289
           G  L  IQ++LGH
Sbjct: 178 GVPLNKIQALLGH 190


>gi|262381150|ref|ZP_06074288.1| integrase [Bacteroides sp. 2_1_33B]
 gi|301311180|ref|ZP_07217108.1| integrase protein [Bacteroides sp. 20_3]
 gi|262296327|gb|EEY84257.1| integrase [Bacteroides sp. 2_1_33B]
 gi|300830754|gb|EFK61396.1| integrase protein [Bacteroides sp. 20_3]
          Length = 392

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 53/165 (32%)

Query: 162 LLYGC--GLRISEALSLTPQN--IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            L+ C  GLR S+ +S+T +N  I+DD+  L             +  SV+          
Sbjct: 237 FLFSCYTGLRFSDIVSITKENFLIIDDKVWL-------------VYSSVKT--------- 274

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA--------------- 262
               +++++LPLF    GK L   +++RY    R   G+PLS+ +               
Sbjct: 275 ----DVSVRLPLFLLFEGKSL--PIYERYKNAPRTLFGVPLSSNSNVNKQLRRISQLASI 328

Query: 263 ------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                 HT RH+ AT LL NG ++ ++Q +LGH  + TT+IY+N+
Sbjct: 329 DKKVSFHTARHTNATLLLYNGANITTVQKLLGHKSVRTTEIYSNI 373


>gi|156138685|dbj|BAF75919.1| integron integrase [uncultured bacterium]
          Length = 180

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 41/68 (60%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R   ++    Q+ I    R  GL      HTLRHSFATHLL  G D+R+IQ +LGH  +
Sbjct: 113 VRRHHIHETTVQKAITDAVRRAGLSKPAGCHTLRHSFATHLLEAGQDIRTIQELLGHSDV 172

Query: 293 STTQIYTN 300
           STT IYT+
Sbjct: 173 STTMIYTH 180


>gi|150007153|ref|YP_001301896.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|255015232|ref|ZP_05287358.1| integrase [Bacteroides sp. 2_1_7]
 gi|256840529|ref|ZP_05546037.1| integrase [Parabacteroides sp. D13]
 gi|298377579|ref|ZP_06987531.1| integrase [Bacteroides sp. 3_1_19]
 gi|149935577|gb|ABR42274.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|256737801|gb|EEU51127.1| integrase [Parabacteroides sp. D13]
 gi|298265598|gb|EFI07259.1| integrase [Bacteroides sp. 3_1_19]
          Length = 392

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 53/165 (32%)

Query: 162 LLYGC--GLRISEALSLTPQN--IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            L+ C  GLR S+ +S+T +N  I+DD+  L             +  SV+          
Sbjct: 237 FLFSCYTGLRFSDIVSITKENFLIIDDKVWL-------------VYSSVKT--------- 274

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA--------------- 262
               +++++LPLF    GK L   +++RY    R   G+PLS+ +               
Sbjct: 275 ----DVSVRLPLFLLFEGKSL--PIYERYKNAPRTLFGVPLSSNSNVNKQLRRISQLASI 328

Query: 263 ------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                 HT RH+ AT LL NG ++ ++Q +LGH  + TT+IY+N+
Sbjct: 329 DKKVSFHTARHTNATLLLYNGANITTVQKLLGHKSVRTTEIYSNI 373


>gi|10956351|ref|NP_052799.1| hypothetical protein pxo1_103 [Bacillus anthracis]
 gi|21392858|ref|NP_652938.1| integrase/recombinase, putative [Bacillus anthracis str. A2012]
 gi|47566494|ref|YP_022446.1| integrase/recombinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|208743354|ref|YP_002267805.1| integrase/recombinase, putative, (pxo1-103) [Bacillus cereus]
 gi|4894320|gb|AAD32408.1| pXO1-103 [Bacillus anthracis]
 gi|20520245|gb|AAM26127.1| putative integrase/recombinase [Bacillus anthracis str. A2012]
 gi|47552309|gb|AAT35474.1| integrase/recombinase, putative [Bacillus anthracis str. 'Ames
           Ancestor']
          Length = 317

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 124/287 (43%), Gaps = 41/287 (14%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T + Y  D   FL ++      K TI  I++LS+ E+  +  +  ++K    +L+R 
Sbjct: 32  SERTKKLYLHDLSHFLRYI------KETIGIIKELSHNEMEIYFYQL-SKKYAATTLRRK 84

Query: 92  LSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
            + ++ FLKY+      ++  S+ L   ++KK   + R L  ++      N +L T  +T
Sbjct: 85  KTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLFPEEV-----NEILDTLKKT 139

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPS 205
            +      ++ +LL   GLRI E  +    +++   S     LR+ GKG+K R V +   
Sbjct: 140 NFF---MYSLFFLLTTTGLRIEEVANAKWADLVFHPSLNVYLLRVVGKGNKTREVRIFED 196

Query: 206 VRKAILEYYDLCPF--------DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           V        DLC          +L+ +          G         +Y+ +      LP
Sbjct: 197 VLN------DLCHLRQLRKQKSELDASSSSAFLPKADGSHYRADYLSKYVAEKIEETNLP 250

Query: 258 L------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                    T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y
Sbjct: 251 FLRYRKHRITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERY 297


>gi|332800312|ref|YP_004461811.1| integrase family protein [Tepidanaerobacter sp. Re1]
 gi|332698047|gb|AEE92504.1| integrase family protein [Tepidanaerobacter sp. Re1]
          Length = 285

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 128/275 (46%), Gaps = 32/275 (11%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T+  YE   ++ + F +F + +      I  ++  +I  ++  ++ + I   S  RS
Sbjct: 20  SEQTITGYE---KELIYFDSFLSVKHNCPVYIEDVTLEDIEDYLLDQKKRGIASASRSRS 76

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLVDNV---LLHTSH 147
           +  ++SF  Y  K+ IT + NI ++    K     R  L E++   L   +   ++ T+ 
Sbjct: 77  VYILRSFYNYCVKKDITAK-NIASLIEPVKVKQKERGYLTEEEFNKLAVAIKQPVIRTAV 135

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
           ET             ++  G R+SE + L   ++  ++  + I +GKG K R +P+   +
Sbjct: 136 ET-------------MFYTGGRMSEIIHLKLDDVNLEEKVIHITKGKGGKARDIPINDKL 182

Query: 207 RKAILEYYDLCPFDLNL-NIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              +  Y +      N+ + +   F  ++  GK ++     R I++    +GL    +AH
Sbjct: 183 YDILKNYIE------NIRDAKSSRFFALKSTGK-VSSSYVNRLIKEAAYEVGLKKDVSAH 235

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            LRHSF T+LL  G  + SIQ +LGH  L+ T  Y
Sbjct: 236 ILRHSFGTNLLEKGASVVSIQKLLGHANLAVTTRY 270


>gi|227461225|gb|ACP39553.1| putative integron integrase [uncultured microorganism]
          Length = 266

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 41/64 (64%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+    QR ++Q  R  G+    + HT RH FATHLL +G D+R++Q +LGH  + TT I
Sbjct: 203 LHEQTVQRAVKQAVRRAGIQQPASCHTFRHCFATHLLEDGYDIRTVQELLGHSDVKTTMI 262

Query: 298 YTNV 301
           YT+V
Sbjct: 263 YTHV 266


>gi|224826550|ref|ZP_03699651.1| integron integrase [Lutiella nitroferrum 2002]
 gi|224601151|gb|EEG07333.1| integron integrase [Lutiella nitroferrum 2002]
          Length = 274

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 111/257 (43%), Gaps = 52/257 (20%)

Query: 95  IKSFLKYLK-KRKI--TTESNILNMRNLKKSNSLPRALNEKQALTLVDN-----VLLHTS 146
           +++FL +L  +R++  +T+S  LN       N L R L + Q L  V       V+L T 
Sbjct: 6   VETFLNHLAVQRQVAASTQSQALNALVFLYENVLTRPLGQMQGLRRVQKRHRVPVVL-TQ 64

Query: 147 HETKWI----DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVP 201
            E K +    +     +  L+YG GLR+ E ++L  +++     T+ ++  KG K R   
Sbjct: 65  DEVKTVLSLMEGTCRLMAELMYGAGLRVHECVTLRIKDVDFSTRTISVRNSKGSKDRTT- 123

Query: 202 LLPS----------VRKAILEYYDLC------PFDLNLNIQLP----------LFRGIRG 235
           +LP+          +R A     DL       P    L+ + P           F     
Sbjct: 124 VLPAQLGSKLQQHLLRVATQHKEDLARGAGLAPMPDALSRKYPSASSSFAWQYAFPSTAL 183

Query: 236 KPLNPG-----------VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
           +P                 QR  ++      +    + H LRHSFATHLL+ G D+R+IQ
Sbjct: 184 RPWGDSGRLVRWHTSDTTIQRAFKKAVAQAQIHKHASVHCLRHSFATHLLAAGTDIRTIQ 243

Query: 285 SILGHFRLSTTQIYTNV 301
            +LGH  L TT IYT+V
Sbjct: 244 LLLGHRSLQTTMIYTHV 260


>gi|124010561|ref|ZP_01695187.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134]
 gi|123982265|gb|EAY23838.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134]
          Length = 299

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 132/313 (42%), Gaps = 31/313 (9%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N+LP       +     WL+ L    G +  T + Y    R+FL FL     E+  I  +
Sbjct: 2   NSLPLYHYQSYVAGFSGWLRTL----GYAPDTCRKYPRQLREFLHFL-----EETGIVDL 52

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK--RKITTESNILNMRNLKK 121
             +    +  F +  +++     S+K   S   + L  ++K  R+ T   + L +     
Sbjct: 53  SSVDGAVVECFFTYLQSRP----SIKTGKSLSTTHLLSMQKTLRQFTRYLDALGLPGF-- 106

Query: 122 SNSLPR------ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
             +LPR      A    +  +  +   L+ +  T +   R+ A+L L YGCGLR +E   
Sbjct: 107 --ALPRLRLQGLAAQSLEVFSQAEIDGLYAACGTDFYGLRDQALLALGYGCGLRRAEVSQ 164

Query: 176 LTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGI 233
           L   ++   +  L ++ GKG K R VP+   V   +  Y       L  +   P L    
Sbjct: 165 LEVSDLHFKKGWLEVKAGKGAKARSVPMPTKVAAYLYRYVYQARAQLPQSGTTPALLLSW 224

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLS----TTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           R   L+  +     R+L     L  S    T+ H LRHS ATHL + G  L +I   LGH
Sbjct: 225 RATRLSKQMVSIRFRELVIKAELLSSEDKRTSFHCLRHSIATHLHAAGVSLANIALFLGH 284

Query: 290 FRLSTTQIYTNVN 302
             L +T+IYT++ 
Sbjct: 285 SSLDSTRIYTHLQ 297


>gi|229113245|ref|ZP_04242740.1| Integrase-recombinase [Bacillus cereus Rock1-15]
 gi|228670271|gb|EEL25619.1| Integrase-recombinase [Bacillus cereus Rock1-15]
          Length = 390

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 68/153 (44%), Gaps = 10/153 (6%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           N  IL  L   G RI E  +   +N+  D +  LR+ GKGDK+R + +   + + I E  
Sbjct: 218 NYTILLALASTGARIQELCTARVKNLHYDGKYWLRVTGKGDKVRELFISEHLFQCISEMR 277

Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266
               F   L+   + PLF   RG   NP      +  + +   L          TAHT R
Sbjct: 278 RRRGFSTILDRGDECPLFVNQRGNFYNPKTLSNQVTDMIKKTNLDFLKYRENPVTAHTFR 337

Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
           H+FA   +  G  DL  +   LGH  + TT+IY
Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370


>gi|283796718|ref|ZP_06345871.1| integrase/recombinase, phage integrase family [Clostridium sp.
           M62/1]
 gi|291075602|gb|EFE12966.1| integrase/recombinase, phage integrase family [Clostridium sp.
           M62/1]
          Length = 331

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 138/313 (44%), Gaps = 43/313 (13%)

Query: 8   EIVSFELLKERQNWLQNLEIER---------GLSKLTLQSYECDTRQFLIFLAFYTEEKI 58
           E+++ +  + +++   N +IE          G S+ +L+ Y    R  L        +KI
Sbjct: 37  EVITVDCSETKEDDTSNRKIEELFIAAKKVEGCSEKSLKYYASTIRTML--------DKI 88

Query: 59  TIQTIRQLSYTEIRAFI----SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
             Q + +++  ++RA++    +++++ K+   +++R LS   SF  +L+      +S I 
Sbjct: 89  GKQVL-EITTDDLRAYLTDYQAEKKSSKVTIDNIRRILS---SFFTWLEDEDYILKSPIR 144

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            +  +K + ++    +++    + D          K    R+ A++ +L   G+R+ E +
Sbjct: 145 RIHKVKSAATIKETYSDESLEKMRD----------KCDSLRDLAMIDMLSSTGMRVGEMV 194

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
            L   +I  D+    + GKGDK RIV      +  +  Y          + +  LF  +R
Sbjct: 195 RLNRDDIRFDERECVVFGKGDKERIVYFDARTKIHLQNY-----LQSRTDSEPALFVSLR 249

Query: 235 G--KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
              + L  G  +  +R+L + L +P     H  R + AT  +  G  +  +Q +LGH R+
Sbjct: 250 SPHRRLTIGGIELRLRELGKRLDIP-KVHPHKFRRTLATMAIDKGMPIEQLQHLLGHQRI 308

Query: 293 STTQIYTNVNSKN 305
            TT  Y  V   N
Sbjct: 309 DTTMHYAMVKQSN 321


>gi|160903194|ref|YP_001568775.1| integrase family protein [Petrotoga mobilis SJ95]
 gi|160360838|gb|ABX32452.1| integrase family protein [Petrotoga mobilis SJ95]
          Length = 306

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 106/247 (42%), Gaps = 47/247 (19%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +  R++K  +  +KSFL YL +    +        N K  + +P+ L E Q       + 
Sbjct: 73  LSQRTIKLRIVVLKSFLNYLYENGEISGKKYWKDANAKIPSDVPKGLTESQIKVFFSVIE 132

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIV 200
                     D  +     LL   GLRISEAL L  + I+  +D + L I GKG+++R +
Sbjct: 133 ----------DKFDKTFYSLLLKTGLRISEALWLEKEQIIFYNDHAELVINGKGNRVRYL 182

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----------PLNPGVFQR----- 245
            +     + ++ + +            P  +G +GK          P+     +R     
Sbjct: 183 KISKQYAEQLITFAEK---------NTP--KGAQGKKYIFSNDNDVPITSRTMERRFKDY 231

Query: 246 ------YIRQLRR--YLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
                  I QLR   Y  +  ++ T H LRH+ A  LL++G +L  ++ ILGH  +STT 
Sbjct: 232 VIKANNKIDQLRTKGYNNINYINATPHALRHTCAKRLLNSGKNLEEVRYILGHTTISTTG 291

Query: 297 IYTNVNS 303
           IY   +S
Sbjct: 292 IYVRSDS 298


>gi|156138691|dbj|BAF75922.1| integron integrase [uncultured bacterium]
          Length = 180

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 41/68 (60%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R   ++    Q+ I    R  GL      HTLRHSFATHLL  G D+R+IQ +LGH  +
Sbjct: 113 VRRHHIHETTVQKAITDAVRRAGLSKPAGCHTLRHSFATHLLEAGQDIRTIQELLGHSDV 172

Query: 293 STTQIYTN 300
           STT IYT+
Sbjct: 173 STTMIYTH 180


>gi|89147679|gb|ABD62698.1| integrase [uncultured bacterium]
          Length = 163

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 38/59 (64%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            QR +R   +  G+    T H LRHSFATHLL  G D+R++Q ++GH  + TT IYT+V
Sbjct: 104 LQRAVRAAGQLAGIEKPVTCHMLRHSFATHLLEQGCDIRTVQQLMGHKHVETTMIYTHV 162


>gi|113971550|ref|YP_735343.1| phage integrase family protein [Shewanella sp. MR-4]
 gi|113886234|gb|ABI40286.1| phage integrase family protein [Shewanella sp. MR-4]
          Length = 310

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 111/233 (47%), Gaps = 15/233 (6%)

Query: 86  RSLKRSLSGIKSFLKY---LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           RS+ R+++ IKS +K    + +  +   ++I ++ N+K        L+ +Q   L+   L
Sbjct: 67  RSINRAMTAIKSIVKVAALMGEADMQQVAHINSIANMKHGAHQGNPLSAEQVTKLL--AL 124

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVP 201
           L    +T  +  R  AI  L  G GLR SE  +L   +     ST+++  GKG+K RI+ 
Sbjct: 125 LSKRQDTYGL--RTLAIFALFLGTGLRRSELAALMLADYDSATSTIKVVAGKGNKSRILF 182

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--RGKPLNPGVFQRYIRQLRRYLGLPLS 259
           L   V + ++ + ++    L   I      GI    +P++     R ++     +G+ + 
Sbjct: 183 LPNWVEQHVIAWLNVRKMQLGPLICHCRTTGIIVHYRPVSQDALYRLVKDKLGDIGV-MG 241

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            + H LR +F T LL    D+ +++ + GH  +STT IY     K G  +M E
Sbjct: 242 ASPHDLRRTFITRLLEQNVDINTVRQMAGHADISTTTIY----DKRGDAFMRE 290


>gi|288561589|ref|YP_003428995.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4]
 gi|288548221|gb|ADC52103.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4]
          Length = 368

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 149/333 (44%), Gaps = 61/333 (18%)

Query: 32  SKLTLQSYECDTRQFLIFL--AFYTEEK----ITIQTIRQLSYTEIRAF----------I 75
           S LTL +Y  D ++FL +L     +E K    ++++T+  LS  E +AF          +
Sbjct: 36  SSLTLFNYARDYQEFLNWLISEGISEAKDIKDVSVETLANLSLQEAQAFFKTMLRRKYLV 95

Query: 76  SKRRTQ--KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-----RNLKKSNSLPRA 128
           SK+  +  ++ ++++ R  S ++S  KYL     T E+   N      RN+ +   + + 
Sbjct: 96  SKKSEEYKQVQEKTVNRMKSALRSLFKYL-----TVEAEAENHEPYFHRNVMQKIPVHKV 150

Query: 129 LNEKQ-------ALTLVDNV---LLH----------TSHETKWID---ARNSAILYLLYG 165
           +  +        +   VDN     LH          T  +T++      R+ AIL L  G
Sbjct: 151 IESRSERAANMTSKIFVDNADADFLHYVQKEYEQTLTKGQTRYFKRDKERDFAILSLFLG 210

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL----CPFDL 221
            G+R++E  +L   ++   Q  +R+  KG+K   V ++P   + +  Y ++       D 
Sbjct: 211 SGIRLNELSNLKLGDVDFTQRLIRVIRKGNKKDSVTVIPEALEDLEAYLEIRNERYNADS 270

Query: 222 NLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
           + N  + + +G  G  PL+    Q+ I +        +S   H LRH++AT+L    GD+
Sbjct: 271 DPNAYVFITKGKNGYSPLSNRAIQKIIAKYTESYDKRMS--PHKLRHTYATNLAEQTGDI 328

Query: 281 RSIQSILGHFRLSTTQIYTNVN---SKNGGDWM 310
             + + LGH    T+ +Y N +   +K   + M
Sbjct: 329 PLVMTQLGHSSPETSLLYINTSLEKAKKAAEEM 361


>gi|331270979|ref|YP_004385690.1| putative integrase/recombinase [Clostridium botulinum BKT015925]
 gi|329127371|gb|AEB77315.1| putative integrase/recombinase, putative [Clostridium botulinum
           BKT015925]
          Length = 272

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 127/272 (46%), Gaps = 41/272 (15%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLS 93
           T+ +Y+ D ++F+    ++ + K+ + TI      E+R F     +  ++  +++ +++ 
Sbjct: 21  TIYTYKNDIKRFI---EYFQKNKLEVNTI------ELRKFKDYLLQGLQLSPKTVNKNIV 71

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            I+ +L ++       + NI  M  ++    L   L   +A+ ++       SH     D
Sbjct: 72  AIRKYLDFIH----INDVNI-KMIKIQDQGFLDDILTNSEAMRMIKEA--DKSH-----D 119

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            R  A +  LY  G+R+SEA+S+  ++I  D+ ++RI GKG K R V L+P   + I   
Sbjct: 120 LRAKAFICTLYYTGMRVSEAISVLVKDI--DEDSIRILGKGKKYRTV-LIPKKLQRIWGD 176

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY--IRQLRRYLGLPL----STTAHTLRH 267
           Y      + +N    LF G RG     G+  R+  +  +++Y G           H  RH
Sbjct: 177 Y----MTVRVNNSDKLFTGQRG-----GI-SRFTALNMVKKYGGKAKVKKDKVYNHAFRH 226

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            F  +L+  G  +  ++ + GH  + TT IYT
Sbjct: 227 LFCMNLVDKGIPIDVVKDLAGHASILTTNIYT 258


>gi|91787470|ref|YP_548422.1| phage integrase [Polaromonas sp. JS666]
 gi|91696695|gb|ABE43524.1| phage integrase [Polaromonas sp. JS666]
          Length = 286

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 75/149 (50%), Gaps = 10/149 (6%)

Query: 159 ILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD 215
           +L  +Y  GLR+SEA +L   +I    D+  +R+  GKG K R   L P++   +  Y  
Sbjct: 123 LLQTIYASGLRVSEACALRVSDIDSAPDRMCIRVACGKGGKGRYSILSPTLLDLLRAYVR 182

Query: 216 LCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                 N      LF    G +P+N  + QR     R +  +  S   HTLRH FATHLL
Sbjct: 183 ------NYRPTTWLFANASGTQPMNIEIAQRAYHAARAHALITKSGGIHTLRHCFATHLL 236

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             G DL +IQ +LGH  ++TT  Y ++ S
Sbjct: 237 EGGVDLFTIQKLLGHGHIATTGRYLHLIS 265


>gi|296163716|ref|ZP_06846430.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886037|gb|EFG65941.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 418

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 121/278 (43%), Gaps = 15/278 (5%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RGL+  T +++    R FL+    +   +I +   R++   ++  FI +R ++     S 
Sbjct: 136 RGLAASTRRNHRDCVRDFLV--DQFGGHRIDM---RRIKPADVLHFIVER-SKGHTPASA 189

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALTLVDNVLLHTS 146
               S ++ +L++ +     TE+ I  +  +       LP+ L + Q    +      T+
Sbjct: 190 GTIASSVRVYLRFRQFSGDHTEALIAAVPKVAVWSMARLPKLLTQAQLAQFLSAFDTQTA 249

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPS 205
                   R+ A+  LL   GLR+ E  +L   ++   + TLRI+  K  +  ++PL   
Sbjct: 250 SGR-----RDYAMARLLVELGLRVGEVAALQLADVDWHEGTLRIRATKCKRTDLLPLPVQ 304

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-HT 264
             +A+ +Y        +        R    +P+ P V    IR      G P S+   H 
Sbjct: 305 TGRALFDYVRFGRPQTSSRALFVRHRAPFDRPVTPAVVCSAIRLAYARCGWPSSSMGTHL 364

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           LRH+ A+ +L NG  L+ I  +L H  ++TT IY  V+
Sbjct: 365 LRHTAASRMLGNGASLKDIADVLRHRSINTTMIYAKVD 402


>gi|227461214|gb|ACP39551.1| putative integron integrase [uncultured microorganism]
          Length = 294

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 41/64 (64%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+    QR ++Q  R  G+    + HT RH FATHLL +G D+R++Q +LGH  + TT I
Sbjct: 231 LHEQTVQRAVKQAVRRAGIQQPASCHTFRHCFATHLLEDGYDIRTVQELLGHSDVKTTMI 290

Query: 298 YTNV 301
           YT+V
Sbjct: 291 YTHV 294


>gi|298243705|ref|ZP_06967512.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297556759|gb|EFH90623.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 332

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 123/254 (48%), Gaps = 19/254 (7%)

Query: 56  EKITIQTIRQ-LSYT-EIRAFISKRRT----QKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           EKIT+  +R+ L Y  E  + + ++RT      + D ++K  ++  K F  +  + ++  
Sbjct: 47  EKITVLHLRECLRYMIETPSEVIRQRTFGKKSNLADSTMKTYVTNWKVFFNWCYQEELID 106

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
                 ++  +    + +    +    ++D + L T      +  R+  IL LL   G+R
Sbjct: 107 SDPSARLKTPRPEKRVLKTFTSEHIYKMLDTLDLSTD-----MGFRDYVILLLLLDTGIR 161

Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN---IQ 226
           +SE  +L  +++ D  + ++++GKG K R V + P + K + +Y        N +   I 
Sbjct: 162 LSEIGTLLLEDVHD--TYIKVRGKGRKEREVGIHPDLGKLLWKYVHKYRHPGNPDEPKIF 219

Query: 227 LPLFRGIRGKPLN-PGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQ 284
           +   +  +GK ++ PGV +  + +LR  LG   +  + HT RH+FA   +++GGD+  + 
Sbjct: 220 IDCTKQGKGKAISGPGV-KGILYRLRLALGFKDVRLSPHTFRHTFAKMYMAHGGDIFKLS 278

Query: 285 SILGHFRLSTTQIY 298
             +GH  +  TQ Y
Sbjct: 279 REMGHSSVRITQRY 292


>gi|166031854|ref|ZP_02234683.1| hypothetical protein DORFOR_01555 [Dorea formicigenerans ATCC
           27755]
 gi|166028307|gb|EDR47064.1| hypothetical protein DORFOR_01555 [Dorea formicigenerans ATCC
           27755]
          Length = 361

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 123/288 (42%), Gaps = 34/288 (11%)

Query: 38  SYECDTRQFLIFL-------AFYTEEKITIQTIRQLSYTEIRAF-----ISKRRTQKI-- 83
           +Y  D R F  FL         YT ++  +Q + ++   +I  +     + KR   ++  
Sbjct: 57  NYAYDIRVFFHFLLENNPIYKNYTMDQFRVQDLERIEPVDIEEYMEYLKVYKREDNEMIT 116

Query: 84  -GDRSLKRSLSGIKSFLKY-LKKRKITTESNIL-NMRNLKKSNSLPRALNEKQALTLVDN 140
            G+R LKR +S ++SF  Y  K + I T   +L +M  L     +   ++E     L+D 
Sbjct: 117 NGERGLKRKMSALRSFYSYYFKHQYIATNPTLLVDMPKLHDKAIIRLDIDE--VAMLLDY 174

Query: 141 VLLHTSHETKWIDA-------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           V     H T    A       R+ AIL LL G G+R+SE + L   ++    + + +  K
Sbjct: 175 VESAGEHLTGQALAYYQKTKNRDLAILTLLLGTGIRVSECVGLNLTDVDFKNNGITVTRK 234

Query: 194 GDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           G    +V     V  A+  Y +     + P   +   +  LF   + K +     +  ++
Sbjct: 235 GGSQMVVYFGDEVADALENYIEADRKVITPLSGH---EEALFLSTQRKRMGVQAIENMVK 291

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           +  R +      T H LR ++ T L    GD+  +  +LGH  ++TT+
Sbjct: 292 KYARQVTPNKKITPHKLRSTYGTSLYKETGDIYLVADVLGHKDVNTTK 339


>gi|223369792|gb|ACM88765.1| integrase [uncultured bacterium]
          Length = 163

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 32/42 (76%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSFATHLL NG D+R++Q +LGH  + TTQIYT V
Sbjct: 121 VTCHTFRHSFATHLLQNGCDIRTVQELLGHTDVKTTQIYTRV 162


>gi|220930346|ref|YP_002507255.1| integrase family protein [Clostridium cellulolyticum H10]
 gi|220000674|gb|ACL77275.1| integrase family protein [Clostridium cellulolyticum H10]
          Length = 307

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 98/217 (45%), Gaps = 19/217 (8%)

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL---LHTSHETKW 151
           +K F  YLK+  I T + I+          LP+   + + + +  +VL   L    ++ +
Sbjct: 77  LKCFFDYLKEEDIITSNPIIK---------LPKRKAQDKIIDIPVDVLQQLLALPDKSSF 127

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI---RIVPLLPSVRK 208
               +  ++ L+  CG+R  EAL+L   +     + + I  +  K    R +PL     +
Sbjct: 128 TGLVDHCLILLMMDCGIRPKEALTLKVSDFDIKHNCVTIPAELAKTGVSRTLPLSIETVR 187

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            I +     P D N N+  P+F     + L+  V  R  ++  + LG  +  T ++LRH 
Sbjct: 188 PITKVISSRPKDWNNNV--PVFCSCSAETLDSEVLSRRFKRYSQKLGTDI--TPYSLRHC 243

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           FA + L NGG+   +Q I+GH     T+ Y  ++  +
Sbjct: 244 FALYYLRNGGNSLMLQKIMGHTTQDMTRKYVALSDTD 280


>gi|229004115|ref|ZP_04161916.1| Integrase/recombinase [Bacillus mycoides Rock1-4]
 gi|228756976|gb|EEM06220.1| Integrase/recombinase [Bacillus mycoides Rock1-4]
          Length = 306

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 116/273 (42%), Gaps = 11/273 (4%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            LS  T+QSY     +F  F +    E I  + IR+ +      +  K R   +  R+ K
Sbjct: 18  NLSPRTIQSYMATLHEFQEFCS--ERELIDTRDIREATVKSYLMYCQKTRGNNVVTRNTK 75

Query: 90  RSLSGIKSFLKYLKKRKITTE-SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
             L  +K F  YL+   I +E  N +    L K +       ++    ++       +  
Sbjct: 76  --LHHLKIFFNYLQHEDIISEKENPIRKMKLAKEDIKIEVFQDEHIKQMLRYYRRLKARN 133

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
             +   R+  I+  L G G R+ E +++    +     T+ + GK  K + VPL   + K
Sbjct: 134 KSFYAYRDHTIIIFLLGTGSRLGELINIRWSELDLVNQTVTLFGKARKQQTVPLTNKLVK 193

Query: 209 AILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTL 265
              EY      +L    +LP  +F    GK ++    +   ++L++ +    +  +AHT 
Sbjct: 194 EFCEYKVFMERELG---RLPEYVFTTREGKQMSSNSVKLIFKRLKQVMNFSDVRLSAHTF 250

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           RH+FA   L  G D+ ++Q +L H  L  T+ Y
Sbjct: 251 RHTFAHRCLMAGMDVFTLQRMLRHSNLRMTERY 283


>gi|89147474|gb|ABD62597.1| integrase [uncultured bacterium]
          Length = 163

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 44/69 (63%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           IR   ++    Q+ +++     G+  + + HT RHSFATHLL  G D+R+IQ +LGH  +
Sbjct: 94  IRRHHIDESSLQKAVKRAVILAGVEKNVSCHTFRHSFATHLLEAGRDIRTIQELLGHKDV 153

Query: 293 STTQIYTNV 301
           STT IYT+V
Sbjct: 154 STTMIYTHV 162


>gi|145594863|ref|YP_001159160.1| phage integrase family protein [Salinispora tropica CNB-440]
 gi|145304200|gb|ABP54782.1| phage integrase family protein [Salinispora tropica CNB-440]
          Length = 322

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 99/230 (43%), Gaps = 16/230 (6%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL----NEKQALTLVDNVL 142
           S+ R+ S   SF  +L    +   + +  +   +     P+ L      +Q LT V  V 
Sbjct: 74  SVHRAWSTWNSFFVFLVADGVVAGNPMPAVGRPRAPLPRPKPLRGADTPEQLLTAVARV- 132

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIV 200
                   W   R+ A+L L    GLR++E L+L   ++     +  L + GKG + R+V
Sbjct: 133 -DGRQRDPWPQ-RDLAVLALALCGGLRLAEMLALRVASLAGRVGERRLDVAGKGGRPRVV 190

Query: 201 PLLPSVRKAILEYYDLCP---FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL- 256
           P+ P + + + +Y + C        +    PL    RG PL  G  Q  +    R  G+ 
Sbjct: 191 PVEPELDQVLADYLESCRRRFGSATVRPDAPLLMDRRGGPLRRGGLQYLVDSCFRRAGIG 250

Query: 257 ---PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              P     H LRH+FAT L  +G     I  +LGH  L+++Q Y  V +
Sbjct: 251 DRVPQGARLHALRHTFATRLAEDGASAAEIMRLLGHVSLASSQAYIEVTA 300


>gi|312876294|ref|ZP_07736280.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796940|gb|EFR13283.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 314

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 106/238 (44%), Gaps = 31/238 (13%)

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           +Q I   +    L+ +K+F K+        E NIL      KSN L   L +K+A   + 
Sbjct: 65  SQPIKPATYNLRLTYLKAFFKW------CVEENIL------KSNPL-EGLPKKKAEGRIV 111

Query: 140 NV-------LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-- 190
           N+       LL    +  +   R+ A++ L    G+R  EA SL  ++   D  TL++  
Sbjct: 112 NIDTEILEKLLKLPDKNTFCGLRDYALILLALDTGIRPKEAFSLLIEHF--DFKTLQVFI 169

Query: 191 ---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
                K    R++P+LP    A+ +   +       + ++P+F  + G+PL   ++   I
Sbjct: 170 PSNAAKTRVSRVLPILPVTANAVKKL--IAARHPEWDEKVPVFCTVTGRPLTSDIWHGRI 227

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
               + LG+ +    + LRH+FA   L NGG   S+Q  LGH  L  T+ Y +    +
Sbjct: 228 EMYSKKLGVKIR--PYDLRHTFALLYLKNGGYELSLQKTLGHTTLEMTKRYVHFTQND 283


>gi|16519921|ref|NP_444041.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
 gi|2497420|sp|P55636|Y4RC_RHISN RecName: Full=Putative integrase/recombinase y4rC
 gi|2182600|gb|AAB92469.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
          Length = 332

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 114/287 (39%), Gaps = 16/287 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RR 79
           +LQ L  +R  S  T+ SY    RQ L F      +  +     ++    I AF+     
Sbjct: 15  FLQRLMQQRQASPHTISSYRDTFRQLLKFAERRLRKPPSRLNFEEIDAPLIVAFLDDLEN 74

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q I  RS    L+ I SF +Y    +I   S  +       S    R L        VD
Sbjct: 75  RQGISVRSRNLRLTAIHSFFRY-AAFEIPEHSAQIQRVLAIPSKRFTRTLVNFLTRPEVD 133

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIR 198
             LL     + W   R+ A L +    GLR+SE   L   ++     + LR+ GKG K R
Sbjct: 134 -ALLAAPDRSTWSGRRDHAFLLVAVQTGLRLSEITGLKRDDLFFGTGAHLRVIGKGRKER 192

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
             P   S   A+L  +   P   +  I   LF   RG+ L+    Q Y+    R +   +
Sbjct: 193 CTPFAKST-TAVLRNWLKEPQRGDQGI---LFPSARGERLSVHGVQ-YMLNKHRQIASAM 247

Query: 259 S-------TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           S        T H LRH+ A  LL  G D   I   LGH  + TTQIY
Sbjct: 248 SPSLEGKRVTVHRLRHTMAMDLLQAGVDRAVIALWLGHESVETTQIY 294


>gi|293372407|ref|ZP_06618791.1| phage integrase, N-terminal SAM domain protein [Bacteroides ovatus
           SD CMC 3f]
 gi|292632590|gb|EFF51184.1| phage integrase, N-terminal SAM domain protein [Bacteroides ovatus
           SD CMC 3f]
          Length = 330

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 125/283 (44%), Gaps = 36/283 (12%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS----KRRTQKIGD 85
           G S+ TL  Y     + L+ L+           I  ++ ++IRA++S    + ++ K+  
Sbjct: 67  GCSEKTLAYYRNTIERLLLTLSV---------AICHITTSDIRAYLSDYQEEHQSSKVTI 117

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            +++R  S   SF  +L+      +S +  +  +K  + +   L+++Q   L D+     
Sbjct: 118 DNMRRIFS---SFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQLRDS----- 169

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
                  + R+ A++ +L   G+R+ E + L  ++I   +    + GKG+K R+V     
Sbjct: 170 -----CTNKRDLALIDILSSTGIRVGELVKLNREDIDFHERQCVVFGKGNKERVVYFNAR 224

Query: 206 VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            +  + +Y D    D   L +++  P  R      L     +  IR+L + L +P     
Sbjct: 225 TKLHLQQYLDERTDDNPALFVSLHSPHTR------LTISGVEVRIRKLGKSLSMP-KVHP 277

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           H  R + AT  +  G  +  +Q +LGH R+ TT  Y  VN  N
Sbjct: 278 HKFRRTLATMAIDKGMPIEQVQRLLGHVRIDTTLHYAIVNQNN 320


>gi|94442308|dbj|BAE93653.1| integron integrase [uncultured bacterium]
          Length = 238

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 41/60 (68%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           V Q+ +R+  + L +    T HT RHSFATHLL +G D+R+IQ +LGH  + TT IYT+V
Sbjct: 178 VIQKEVRRSVQALKMSKRVTCHTFRHSFATHLLESGSDIRTIQELLGHADVRTTMIYTHV 237


>gi|331090722|ref|ZP_08339570.1| hypothetical protein HMPREF9477_00213 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330399991|gb|EGG79647.1| hypothetical protein HMPREF9477_00213 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 283

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 130/293 (44%), Gaps = 35/293 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE--EKITIQTIRQLSYTEIRAFIS 76
           + +L+ LE    +  L  +S  C       FL +  +  E++T Q        ++R F+ 
Sbjct: 3   EKYLEQLEEAGKIRNLKERSINCYKNYVSYFLKYQAKPPEELTCQ--------DVRNFLL 54

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            ++ + +   +L    S I+ F +           N+L++  L    ++PR + E +  T
Sbjct: 55  AKKEEGLKATTLNLYNSSIRFFYR-----------NVLHI--LWDDITVPRMILEHKLPT 101

Query: 137 L--VDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +  VD +  LL    + K+      A+   +Y  G+R+SE + L   +I      + ++ 
Sbjct: 102 VLTVDEIDRLLEAVDDIKY-----RAMFATMYSSGMRVSEVIHLHYDDISRSNMQIHVRD 156

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
             +++    +L      IL  Y    F+      +       G  L     ++ +R+   
Sbjct: 157 TKNRMDRYTILSKRCLDILTQY---WFEKGRPRGILFPNKFTGNYLTVSTLEQVMRRAVS 213

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
              LP   T H LRHSFATHL+  G + ++IQ++LGH    +T++Y +V++K+
Sbjct: 214 DAELPKKATPHCLRHSFATHLMEQGVERQNIQALLGHRDPKSTEVYLHVSNKS 266


>gi|257876970|ref|ZP_05656623.1| integrase/recombinase [Enterococcus casseliflavus EC20]
 gi|257811136|gb|EEV39956.1| integrase/recombinase [Enterococcus casseliflavus EC20]
          Length = 289

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 134/280 (47%), Gaps = 28/280 (10%)

Query: 26  EIERGLSKLTLQSYECDTRQFL-IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           E  RG+S+ T++ ++    +FL +F  F  +E+I    +  ++   IR F+  +  +   
Sbjct: 17  EKARGISQKTIKKHQ----KFLKLFFDFLKKEQIYF--VEDVTPKSIRQFMLMKLEEGCA 70

Query: 85  DRSLKRSLSGIKSFLKY-LKKRKITTESN-ILNMRNLKKSNSLPRALNE---KQALTLVD 139
           +  +   L  I+++ KY + +  +  + N  + ++ +K+   + +  N+   K+ L +  
Sbjct: 71  ETYVNSHLRSIRAYFKYCVDEDYVRYDRNPCMRVKWVKERKVIIQTFNDMEIKEMLKVAK 130

Query: 140 NVLL---------HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            +           HT ++TK+ + R+  +L +L   GLRISE ++L   +I + +  +  
Sbjct: 131 KLTFFKPQKMDKQHTGYQTKFTNQRDYLLLLILIDTGLRISEVMNLKDVHITNKELFVE- 189

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCP--FDLN--LNIQLPLFRGIRGKPLNPGVFQRY 246
            GKG K RIV   P + K  ++Y  +    F+ N   NI   +F    GK  N  + +R 
Sbjct: 190 NGKGKKDRIVHCSPLIYKEYIKYKRVANSFFEYNEIENIDNYVFLTREGKQYNYILAERA 249

Query: 247 IRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
           I ++     +   +  + H+ RH FA  L+ NG D+  IQ
Sbjct: 250 IIKIGNQCEIRKSIRVSPHSFRHYFAQKLVRNGTDIYRIQ 289


>gi|223369840|gb|ACM88789.1| integrase [uncultured bacterium]
          Length = 163

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 40/60 (66%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             QR +RQ  R  G+    + HTLRHSFATHLL +G  +R++Q +LGH  + TT IYT+V
Sbjct: 103 ALQRAVRQALRKAGIVKPGSVHTLRHSFATHLLESGYGIRTVQELLGHADVKTTMIYTHV 162


>gi|156138687|dbj|BAF75920.1| integron integrase [uncultured bacterium]
          Length = 181

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 41/68 (60%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R   ++    Q+ I    R  GL      HTLRHSFATHLL  G D+R+IQ +LGH  +
Sbjct: 114 VRRHHIHETTVQKAITDAVRRAGLSKPAGCHTLRHSFATHLLEAGQDIRTIQELLGHSDV 173

Query: 293 STTQIYTN 300
           STT IYT+
Sbjct: 174 STTMIYTH 181


>gi|94442296|dbj|BAE93647.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 46/74 (62%)

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           P    +R   +     Q+ +++     G+  + + H+LRHSFATHL+ +G D+R++Q +L
Sbjct: 88  PRSGAVRRHHIGESSMQKAVKRALATAGIEKNASCHSLRHSFATHLIESGTDIRTVQELL 147

Query: 288 GHFRLSTTQIYTNV 301
           GH  +STT IYT+V
Sbjct: 148 GHKDVSTTMIYTHV 161


>gi|89147472|gb|ABD62596.1| integrase [uncultured bacterium]
          Length = 163

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 44/69 (63%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R    +P   ++ I++    +GL    TAHT RHS AT LL +G DLR+IQ +LGH  +
Sbjct: 94  LRRHHFHPTCIRKAIKKQVTMIGLHKRVTAHTFRHSLATRLLEHGYDLRTIQELLGHADI 153

Query: 293 STTQIYTNV 301
           STT IYT+V
Sbjct: 154 STTAIYTHV 162


>gi|302539285|ref|ZP_07291627.1| integrase [Streptomyces sp. C]
 gi|302448180|gb|EFL19996.1| integrase [Streptomyces sp. C]
          Length = 356

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 64/130 (49%), Gaps = 19/130 (14%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCP---FDLNLN-IQLPLF-----------RGIRG 235
           QG+G K R+VPL+   R  +LE++   P   FD  +N  + PLF           R +  
Sbjct: 211 QGRGKKERLVPLINGARD-LLEWWVTGPRWEFDDKVNDPRAPLFPSERRYGDGSSRAVTD 269

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             L  G+ +  +R L    G     T H LRH  A+ L  NG D+ +IQ ILGH  L+TT
Sbjct: 270 DALRTGLAEAVVRHLPHQAG---QLTPHVLRHFAASDLYRNGMDVVAIQEILGHEWLNTT 326

Query: 296 QIYTNVNSKN 305
            IY +V   +
Sbjct: 327 MIYVHVEKSH 336


>gi|254436138|ref|ZP_05049645.1| hypothetical protein NOC27_3201 [Nitrosococcus oceani AFC27]
 gi|207089249|gb|EDZ66521.1| hypothetical protein NOC27_3201 [Nitrosococcus oceani AFC27]
          Length = 87

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 45/73 (61%)

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   ++  +  + I+   R  G+    +AHT RHSFATHLL  G D+R+IQ +LGH  L 
Sbjct: 3   RRHHIDQSLINKAIKAAVRQAGITKRVSAHTFRHSFATHLLQRGIDIRTIQDLLGHRDLE 62

Query: 294 TTQIYTNVNSKNG 306
           TT IYT+V ++ G
Sbjct: 63  TTMIYTHVLNQGG 75


>gi|157737437|ref|YP_001490120.1| integrase/recombinase XerD [Arcobacter butzleri RM4018]
 gi|157699291|gb|ABV67451.1| integrase/recombinase XerD [Arcobacter butzleri RM4018]
          Length = 350

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 75/145 (51%), Gaps = 13/145 (8%)

Query: 166 CGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSV-RKAILEYYDL--CPFD 220
            G+R+SE L+L  ++I   D+   L+I+GKG+K R+V +  S+  K +  + D+  C  D
Sbjct: 204 TGIRVSEILNLRIKDIFKEDNVYMLQIRGKGNKPRVVMIKSSIIEKELQNWLDMRVCNSD 263

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGD 279
           L       L    +G+ L      R +  +    G+      AH LRHSFAT L     D
Sbjct: 264 L-------LVCNQKGERLTQAYISRVVENILISAGIRKEKNGAHMLRHSFATLLYQKHHD 316

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSK 304
           L  +Q  LGH  ++T++IYT+ + +
Sbjct: 317 LILVQEALGHADINTSRIYTHFDKE 341


>gi|13272355|gb|AAK17117.1|AF302086_1 DNA integrase IntI [Pseudomonas aeruginosa]
          Length = 317

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 121/298 (40%), Gaps = 58/298 (19%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTT 309


>gi|218666422|ref|YP_002425617.1| tyrosine recombinase, phage integrase family [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|218518635|gb|ACK79221.1| tyrosine recombinase, phage integrase family [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 301

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 121/301 (40%), Gaps = 41/301 (13%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT---IQTIRQLSYTEIRAFISK 77
           W+         SK T++ Y  +  +FL FL F   E+I+   I  +R+   T      + 
Sbjct: 14  WISGPNFRNPYSKATIRIYGRNVHRFLEFLDFDGVERISEASIHLVRKFVMTGQSGGTAP 73

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLK------------KRKITTESNILNMRNLKKSNSL 125
             TQ +           +  F  YL+             R +  +       N+ K+ + 
Sbjct: 74  VNTQNV-------RTGALALFFDYLESTEEHGPFSGNPARALIEDQKHKKGGNVGKATAR 126

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD- 184
            R + E   +   D +    S +      R++A++  ++  GLR SE  +L P +  +  
Sbjct: 127 LRPVLEWDDM---DRLQYEASKQETIAGIRDAALIGFIFDTGLRASEICAL-PHSAAEYY 182

Query: 185 -QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPL 238
            Q  LR+ GKGDK R+V   P       E+ D     +    ++      LF    G  L
Sbjct: 183 FQGRLRVIGKGDKERLVRFTP-------EHADRLRAWIRTRARVVSKSDALFLTDEGNAL 235

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +  V    +R+L    G+  +    H LRH+ A+  L+ G DLR +Q  +GH  + TT  
Sbjct: 236 STQVLYMIVRRLLDRAGIQKAQQGPHLLRHTAASRWLAKGMDLRQVQENMGHSNIGTTSK 295

Query: 298 Y 298
           Y
Sbjct: 296 Y 296


>gi|307131117|ref|YP_003883133.1| Integrase/recombinase [Dickeya dadantii 3937]
 gi|306528646|gb|ADM98576.1| Integrase/recombinase [Dickeya dadantii 3937]
          Length = 139

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 6/100 (6%)

Query: 223 LNIQLP-LFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
           +N   P LF  + G + L P      +    R  G+    + H  RH+ ATH+L NG DL
Sbjct: 7   VNPHCPALFVALDGVEGLTPNGITNLVSHYIRASGIAKWGSCHLFRHAMATHMLENGADL 66

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           R IQ++LGH  + +TQIYT V+ +     +  ++  THP+
Sbjct: 67  RWIQAMLGHASVESTQIYTQVSIRA----LQAVHASTHPA 102


>gi|308274017|emb|CBX30616.1| hypothetical protein N47_E41280 [uncultured Desulfobacterium sp.]
          Length = 165

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/52 (53%), Positives = 39/52 (75%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           G+  + ++H  RHSFATHLL +G D+R+IQ +LGH  +STT IYT+V +K G
Sbjct: 101 GITKNVSSHAFRHSFATHLLEDGYDIRTIQELLGHKDVSTTMIYTHVLNKGG 152


>gi|223369856|gb|ACM88797.1| integrase [uncultured bacterium]
          Length = 163

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (65%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+    QR + +    +G     + HTLRHSFATHLL NG D+R++Q +LGH  +STT I
Sbjct: 99  LSEDSLQRAVEKSAGEIGNNKRGSCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMI 158

Query: 298 YTNV 301
           YT+V
Sbjct: 159 YTHV 162


>gi|23320701|gb|AAN16072.1| integron integrase [uncultured bacterium]
          Length = 292

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 116/281 (41%), Gaps = 79/281 (28%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK---ITTESNILN--------------- 115
           F SKR   ++G        SGI +F+ +L   +    +T+S   N               
Sbjct: 31  FHSKRHPSEVGP-------SGIVAFVNHLAANQQVAASTQSQAFNALLFLYRDVLDVEIG 83

Query: 116 ----MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
               +R +++   LP  L+  +    V +VLL      + I         LLYG GLRI+
Sbjct: 84  ALVGLRRIQRLQRLPVVLSIDE----VRSVLLQMVGTPRLIAE-------LLYGTGLRIT 132

Query: 172 EALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDL-------------- 216
           EA++L  ++I     T+ ++G KG K R   LLPS  +  L  + L              
Sbjct: 133 EAMTLRIKDIDFAARTITVRGGKGGKDRAT-LLPSKLREPLHRHVLRVLALHKQDCLQGR 191

Query: 217 --CPFDLNLNIQLPLF------------RGIRGKP---------LNPGVFQRYIRQLRRY 253
              P    L+ + PL             R IR  P          +  + QR  R     
Sbjct: 192 GHAPLPGALHRKYPLASRNPSWQFVFPSRVIRNCPESGRQLRWHASETMVQRAFRNTLAL 251

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
             +    + HTLRHSFATHLL++G D+R+IQ +LGH  L T
Sbjct: 252 AEVRKHASVHTLRHSFATHLLADGTDIRTIQLLLGHRSLKT 292


>gi|124387997|gb|ABN10350.1| unknown orf/DNA integrase fusion protein [Pseudomonas aeruginosa]
          Length = 281

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 41/66 (62%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 200 TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 259

Query: 302 NSKNGG 307
               G 
Sbjct: 260 LKVGGA 265


>gi|94442290|dbj|BAE93644.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 46/74 (62%)

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           P    +R   +     Q+ +++     G+  + + H+LRHSFATHL+ +G D+R++Q +L
Sbjct: 88  PRSGAVRRHHIGESSMQKAVKRALATAGIEKNASCHSLRHSFATHLIESGTDIRTVQELL 147

Query: 288 GHFRLSTTQIYTNV 301
           GH  +STT IYT+V
Sbjct: 148 GHKDVSTTMIYTHV 161


>gi|89147494|gb|ABD62607.1| integrase [uncultured bacterium]
          Length = 163

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 39/58 (67%)

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           QR I+   R   +    + HTLRHSFATH L NG D+R++Q +LGH  +STT IYT+V
Sbjct: 105 QRAIKMALRKADIIKPASTHTLRHSFATHFLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|307721075|ref|YP_003892215.1| integron integrase [Sulfurimonas autotrophica DSM 16294]
 gi|306979168|gb|ADN09203.1| integron integrase [Sulfurimonas autotrophica DSM 16294]
          Length = 338

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 76/178 (42%), Gaps = 41/178 (23%)

Query: 162 LLYGCGLRISEALSLTPQNI---------MDDQS----------------TLRIQGKGDK 196
           L+YGCGLR+SE L++  ++I          D +S                 +++Q   D 
Sbjct: 131 LMYGCGLRMSEVLNIRIKDIDFGFNKLYIWDSKSLKDKTIPLPLKLKEELLVQVQRVQD- 189

Query: 197 IRIVPLLPSVRKAILEY-----YDLCPFDLNLNIQLPLFRGIRGKP---------LNPGV 242
           I +  L        L +     Y    ++       P+ R I   P         ++P  
Sbjct: 190 IHVKDLEDGYGSVYLPFAYEKKYPNAKYETKWQFLFPM-RNISKDPRSNLKRRHHIHPQT 248

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             R I+   +   L    T+H  RHS+ATHLL  G DLRSIQ +LGH  + TT IYT+
Sbjct: 249 LGRNIKIASKKANLNKRVTSHIFRHSYATHLLQTGIDLRSIQELLGHKSVETTMIYTH 306


>gi|240169979|ref|ZP_04748638.1| integrase family protein [Mycobacterium kansasii ATCC 12478]
          Length = 359

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 16/175 (9%)

Query: 145 TSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----------- 192
           TS    W+ A R++A+  + YG GLR  E   L   +   + +  ++ G           
Sbjct: 163 TSGRKGWLAAFRDAALFKVCYGFGLRRREVAMLDVADFTANPAAPQLGGLGVCQVRFGKA 222

Query: 193 -KGDKIR---IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            +G   R   +  ++P   +A+ +Y  L            L+   RG  ++P        
Sbjct: 223 MRGSPPRRRSVAAVMPWALEALEQYLTLVRPRYAAAAHPALWLTERGGRISPRQVDDRFA 282

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           + R   GLP   + H LRHS+ +HL+ +G D   +Q  +GH   STT +YT V +
Sbjct: 283 RWRAAAGLPTELSVHCLRHSYVSHLIEDGVDPLFVQQQVGHSWASTTAVYTQVGA 337


>gi|32471173|ref|NP_864166.1| integrase [Rhodopirellula baltica SH 1]
 gi|32396875|emb|CAD71843.1| integrase [Rhodopirellula baltica SH 1]
          Length = 195

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 10/147 (6%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC 217
           I   +Y CGLR  +   L PQ++  D+  LR+   KG + R VPL  +   A   ++   
Sbjct: 23  IFRAMYSCGLRGVDVRHLRPQDVDADRMMLRVCTTKGHRQREVPLPQATLDAFRAHW--- 79

Query: 218 PFDLNLNIQLPLFR-----GIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFAT 271
               N N   P  +         +P++    QR   ++   LG   S  T HTLRHS+AT
Sbjct: 80  ATHRNPNWLFPATQRNTPASKADQPISARTIQRGFTKVTESLGWQDSGLTPHTLRHSYAT 139

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIY 298
            +L  G +L+ +Q  LGH  L  T++Y
Sbjct: 140 AMLDAGVNLKVLQGYLGHKNLQATEVY 166


>gi|325661577|ref|ZP_08150201.1| hypothetical protein HMPREF0490_00935 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472104|gb|EGC75318.1| hypothetical protein HMPREF0490_00935 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 354

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 129/300 (43%), Gaps = 36/300 (12%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLA----FYTEE---KITIQTIRQLSYTEIRAFI---- 75
           +E   S  T  SY  D R F  FL      Y +    + T++ + QLS  +I  ++    
Sbjct: 38  MEPTTSAKTRISYAYDIRTFFYFLVECNPLYRDRSTTQFTLEDLDQLSSVDIEEYLEYLK 97

Query: 76  ---SKRRTQKI-GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
              S    Q I  ++ L R +S ++SF  Y  KR+   ++  L +   K        L+ 
Sbjct: 98  VYESSENKQIINSEQGLARKMSALRSFYGYFFKRQAIEKNPTLLVDMPKLHEKAIIRLDT 157

Query: 132 KQALTLVDNVLLHTSH----------ETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
            +   L+D +    S           +TK+   R+ AI+ LL G G+R+SE + L   ++
Sbjct: 158 DEVAILLDYIETCGSQLTGQKKVYYEKTKY---RDLAIITLLLGTGIRVSECVGLDINDV 214

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGK 236
               + +++  KG    +V     V KA+ +Y +L   ++     LP     LF   + K
Sbjct: 215 DFKNNGVKVTRKGGNEMVVYFGREVEKALRDYLELTRKNIT---PLPDHENALFLSTQRK 271

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            +     +  +++  + +      T H LR ++ T L    GD+  +  +LGH  ++TT+
Sbjct: 272 RMGVQAVENMVKKYAKQVTPNKKITPHKLRSTYGTSLYKETGDIYLVADVLGHKDVNTTK 331


>gi|206973194|ref|ZP_03234116.1| integrase/recombinase, phage integrase family [Bacillus cereus
           AH1134]
 gi|206732078|gb|EDZ49278.1| integrase/recombinase, phage integrase family [Bacillus cereus
           AH1134]
          Length = 332

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 114/277 (41%), Gaps = 32/277 (11%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           + I T+  L   E R F    + + I  R++ R+ S +KS  KYL +     +      R
Sbjct: 43  VPITTLENLPLNEARTFQRYLQGEGIETRAINRTFSALKSLFKYLAQNTENEQGENYISR 102

Query: 118 NLKKSNSLPRA---------------LNEKQALTLVDNV------LLHTSHETKWI---- 152
           N+ +   L +                 NEK  +  +  +      +L+     K+     
Sbjct: 103 NVMEKIELHKEKVDAAARADDVANMIFNEKDDVAFLQFLANDYGEMLNDISPKKYSFFQR 162

Query: 153 -DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
              R+  I+ L+ G GLR+SE  SLT  +I   Q  + +  KG+K   +    S    + 
Sbjct: 163 DKERDIPIISLILGTGLRVSEVASLTISSINFRQGKVEVTRKGNKRSSILATRSCLDDVQ 222

Query: 212 EYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQL--RRYLGLPLSTTAHTLRH 267
           EY  + P   N   +  L      +GK     V  R I++L  +         + H LRH
Sbjct: 223 EYIKVRPGKYNCPQDEDLLFVTNYKGKYTQLTV--RSIQKLCDKYSSAFDEKRSPHKLRH 280

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           ++AT+      DL  ++  LGH  +  T IYTN+N++
Sbjct: 281 TYATNHYKENKDLVLLRDQLGHTSIEVTSIYTNINNE 317


>gi|89147332|gb|ABD62528.1| integrase [uncultured bacterium]
          Length = 163

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 43/61 (70%), Gaps = 3/61 (4%)

Query: 244 QRYIRQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +R  RQL++ +   G+    + HTLRHSFATHLL  G D+R++Q +LGH  +STT IYT+
Sbjct: 102 ERLNRQLKKAVVQAGIAKHVSVHTLRHSFATHLLQAGTDIRTVQELLGHSDVSTTMIYTH 161

Query: 301 V 301
           V
Sbjct: 162 V 162


>gi|21229822|ref|NP_635739.1| site-specific recombinase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66766698|ref|YP_241460.1| site-specific recombinase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|12746334|gb|AAK07444.1|AF324483_1 site-specific recombinase IntIA [Xanthomonas campestris pv.
           campestris]
 gi|21111319|gb|AAM39663.1| site-specific recombinase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66572030|gb|AAY47440.1| site-specific recombinase [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 327

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 83/182 (45%), Gaps = 39/182 (21%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD----- 215
           LLYG G+R+ E L L  +++   +  + ++ GKG K R VPL  S+R  +++  +     
Sbjct: 131 LLYGSGMRLLECLRLRIKDVDMVRCEIVVRDGKGGKDRRVPLPRSLRGELMQQRERALLL 190

Query: 216 --LCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYL----------------- 254
                 +    + LP  L R      + PG +Q      RR +                 
Sbjct: 191 HAADLAEGAGQVFLPHALARKYPSADVEPG-WQYLFPGARRSVDPRSGRVGLHHVSEEIR 249

Query: 255 -----------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
                      G+    T HTLRHSFATH L  G D+R++Q +LGH  ++TTQIYT+V  
Sbjct: 250 QRAVHAARRRAGIDKPATCHTLRHSFATHPLEAGHDIRTVQELLGHKDVATTQIYTHVLG 309

Query: 304 KN 305
           + 
Sbjct: 310 RG 311


>gi|330448288|ref|ZP_08311936.1| phage integrase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492479|dbj|GAA06433.1| phage integrase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 480

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 129/318 (40%), Gaps = 61/318 (19%)

Query: 19  QNWLQNLEIE------RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           Q WLQ +E +         S++ L+++ C    F I       + IT+     L  T ++
Sbjct: 171 QGWLQPIEPQFYRFELSTQSRVMLEAFSC----FCIRSCVERFDWITLLYAPVLQST-MQ 225

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLK--KSNSLPRAL 129
           +F++ R     GD+    + +   + L+ L+   +    + ++++  L+  K+  LPR  
Sbjct: 226 SFLTDRIENTFGDQKKSYAPATADNLLRMLRGVAQHAWLAELISVETLERIKAIKLPRGS 285

Query: 130 NEKQALTLVDNVLLHTS-----HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
            +     L    L H S      + K    R++AI +L+Y  GLR +E +SL   +I  D
Sbjct: 286 RQSSGRYLSYQELDHISALTLEQKNKAKALRDNAIFWLMYEAGLRRAEVVSLNIYDIDMD 345

Query: 185 QSTLRIQGKGDKIRIVPLL------------------------PSVRKAILEYYDLCPFD 220
           +  LR+ GKG+K R VP                          P++   I  Y  L    
Sbjct: 346 RCQLRVVGKGNKERYVPFSINSDLYSTMQQWLAVRQQNSLMDKPALFCTINRYQALTHQR 405

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
           L       L +G+  K  N  V                  + H  RHS AT+LL  G DL
Sbjct: 406 LTTQTLNDLCKGLNKKGFNRVV------------------SPHDFRHSVATNLLRAGFDL 447

Query: 281 RSIQSILGHFRLSTTQIY 298
             +   +GH  ++TTQ Y
Sbjct: 448 LLVSKFMGHSSITTTQRY 465


>gi|317009395|gb|ADU79975.1| integrase/recombinase (xerD) [Helicobacter pylori India7]
          Length = 355

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 126/271 (46%), Gaps = 19/271 (7%)

Query: 48  IFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKR 105
           +FL F Y ++ + +++ R LS  ++  F+ +   Q     S+ + +  ++ F  YL +K+
Sbjct: 77  LFLFFDYFKDNLKLRSFRVLSEEQVINFLFEL-AQNRKPSSMAKYVMYLRQFFDYLDRKK 135

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
             + +  + N+   K   SLPR LN K     +   LL  S  T + + RN  IL ++  
Sbjct: 136 HYSFDFALKNLAFAKTKESLPRHLNYKDLKAFL-KTLLEYSPATSF-EKRNKCILLIVIL 193

Query: 166 CGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
            GLR  E LS+  ++I  ++   ++ IQGKG K R   +  S+ +  L  +    + L  
Sbjct: 194 GGLRKCEVLSIELKHIQVEEQNYSILIQGKGRKERKAYIKKSLLELSLNAWLSDDYRLKY 253

Query: 224 NIQLPLFRGIRGKPLN--------PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
              + LF+  + K  N        P +F+  + Q++ Y      T  H  RHSFAT +  
Sbjct: 254 FNGVYLFKKDKQKAQNSLTLYNFIPLIFK--LAQIKHYK--QYGTGLHLFRHSFATLIYQ 309

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
              DL      LGH  L +T+IY +   ++ 
Sbjct: 310 ETQDLVLTSRALGHSSLLSTKIYIHTTQEHN 340


>gi|70905575|gb|AAZ14841.1| orf/DNA integrase fusion protein [Achromobacter denitrificans]
          Length = 287

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 41/66 (62%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 206 TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 265

Query: 302 NSKNGG 307
               G 
Sbjct: 266 LKVGGA 271


>gi|158312286|ref|YP_001504794.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158107691|gb|ABW09888.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 304

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 125/292 (42%), Gaps = 22/292 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL E + WL     ERGLS ++++ Y   ++ FL  +            +  L   ++ A
Sbjct: 16  LLVEFRGWLDR---ERGLSPVSVRCYAKQSKVFLAGIG-------GAGAVSGLDAGKVTA 65

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKK--RKITTESNILNMRNLKKSNSLPRALNE 131
           F+    T      S K  ++ +++FL++     R   + +  +      + ++LPR L  
Sbjct: 66  FMVAW-TAGRNTWSAKAMVTSLRAFLRFAHATGRTAVSLAGAVPAVASWRMSALPRGLKA 124

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            +    ++ +L     +T  +  R+ A+L LL   GLR +EA  L   +I      + + 
Sbjct: 125 SE----IERLLTGCDRDTA-VGLRDYAVLSLLARLGLRSAEAAGLRLDDIDWRAGEIAVT 179

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           GKG +   +PL     +AI  +     P   + ++ + + R  R  PL P   +  + + 
Sbjct: 180 GKGSRTERLPLPAPAGEAIAAWLTGGRPRCESRSVFVTVRRPYR--PLTPESVRAVMGRA 237

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               GL    T H  RH+ AT +L  G  L  +  +L H    +T +Y  V+
Sbjct: 238 CERAGLERRGT-HRFRHALATEMLRAGASLPEVGQVLRHRSQLSTSLYAKVD 288


>gi|89147551|gb|ABD62635.1| integrase [uncultured bacterium]
 gi|89147590|gb|ABD62654.1| integrase [uncultured bacterium]
 gi|89147618|gb|ABD62668.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 36/47 (76%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           G+  S + HT RHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 116 GIRKSGSCHTFRHSFATHLLENGQDIRTVQELLGHKDVSTTMIYTHV 162


>gi|306822058|ref|ZP_07455442.1| phage integrase [Bifidobacterium dentium ATCC 27679]
 gi|304554658|gb|EFM42561.1| phage integrase [Bifidobacterium dentium ATCC 27679]
          Length = 273

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 91/212 (42%), Gaps = 41/212 (19%)

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
           SF ++++   +  +     + ++++  + PR   +K  L+ +              +   
Sbjct: 80  SFFRWIRAHDLRDDDPSQELPSVRRPQTHPRPCPDKVILSALSKA-----------NDEE 128

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
             +L L   CGLR SE  S++  ++MDD    +L ++GK DK R+VPL   +   I  ++
Sbjct: 129 QLMLRLGAECGLRRSEIASVSSTDVMDDLVGRSLIVRGKNDKQRLVPLPDDLADLITAHH 188

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-----TAHTLRHSF 269
           D                      L PG +Q ++     Y+G  LS      T H+LRH +
Sbjct: 189 DY---------------------LFPGRWQGHVEA--SYIGKHLSRLLDGWTTHSLRHRY 225

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           AT       DL  +  +LGH  + TTQ Y  +
Sbjct: 226 ATRAYEATHDLLLVSKLLGHASVETTQRYVAM 257


>gi|298245910|ref|ZP_06969716.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297553391|gb|EFH87256.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 328

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 117/253 (46%), Gaps = 17/253 (6%)

Query: 56  EKITIQTIRQL------SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           EK+TI  +R        + +E+    S  +   + D S+K  ++  K F  +  + ++  
Sbjct: 47  EKVTILHLRDCVRHMIDTPSEVVRERSYGKKSNLADSSVKTYVNIWKVFFNWCYQEELID 106

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
            +    ++  K    + +    +    ++D++ L T      I  R+  IL LL   G+R
Sbjct: 107 SNPSARLKAPKLEKRVLKTFTSEHIYRMLDSLNLSTD-----IGFRDYVILLLLLDTGIR 161

Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN---IQ 226
           + E  +L  +++ D  + ++++GKG K R V + P V K + +Y        N +   I 
Sbjct: 162 LDEIGTLLLEDVHD--TYIKVRGKGRKEREVGIHPDVSKQLWKYVHKHRHPGNPDEPKIF 219

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQS 285
           +   +  RGK ++    +  + +L+  L L  +  +AHT RH+FA   L+ GGD+  +  
Sbjct: 220 IDCSKQGRGKAISRAGVKGMLARLKVALDLKDVRLSAHTFRHTFAKMYLAQGGDIFKLSR 279

Query: 286 ILGHFRLSTTQIY 298
            +GH  +  TQ Y
Sbjct: 280 EMGHTNVRITQKY 292


>gi|330502138|ref|YP_004379007.1| phage integrase family protein [Pseudomonas mendocina NK-01]
 gi|328916424|gb|AEB57255.1| phage integrase family protein [Pseudomonas mendocina NK-01]
          Length = 342

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 29/152 (19%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I+ L    G R SEA  LTP  + +   T   + K  K+R VP+ P +   I +++    
Sbjct: 188 IVLLCLATGARWSEAECLTPSRLRNGAVTYS-KTKSSKVRTVPIQPELEAFIRDHWK--- 243

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG-----LPLSTTAHTLRHSFATHL 273
                                 G F   I   RR L      LP    +H LRH+FA+H 
Sbjct: 244 --------------------RHGQFTGAITSFRRALSRSGIVLPKGQASHALRHTFASHF 283

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +  GG++ ++Q ILGH  L+ T  Y ++  ++
Sbjct: 284 MQKGGNILTLQKILGHSSLAMTMRYAHLAPEH 315


>gi|227461180|gb|ACP39537.1| putative integron integrase [uncultured microorganism]
          Length = 306

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 41/64 (64%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+    QR ++Q  R  G+    + HT RH FATHLL +G D+R++Q +LGH  + TT I
Sbjct: 243 LHEQTVQRAVKQAVRRAGIQQPASCHTFRHCFATHLLEDGYDIRTVQELLGHSDVKTTMI 302

Query: 298 YTNV 301
           YT+V
Sbjct: 303 YTHV 306


>gi|89147340|gb|ABD62532.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 43/61 (70%), Gaps = 3/61 (4%)

Query: 244 QRYIRQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +R  RQL++ +   G+    + HTLRHSFATHLL  G D+R++Q +LGH  +STT IYT+
Sbjct: 102 ERLNRQLKKAVVQAGIAKHVSVHTLRHSFATHLLQAGTDIRTVQELLGHSDVSTTMIYTH 161

Query: 301 V 301
           V
Sbjct: 162 V 162


>gi|89147334|gb|ABD62529.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 44/74 (59%)

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           P  + +R   L+    Q+ +R+    +G+    T H  RH FATHLL  G D+R++Q +L
Sbjct: 89  PRSKVVRRHHLDESGLQKAVRRAATEVGITKHVTPHIFRHCFATHLLEAGYDIRTVQELL 148

Query: 288 GHFRLSTTQIYTNV 301
           GH  + TTQIYT+V
Sbjct: 149 GHKDVKTTQIYTHV 162


>gi|225572145|ref|ZP_03781009.1| hypothetical protein RUMHYD_00439 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040317|gb|EEG50563.1| hypothetical protein RUMHYD_00439 [Blautia hydrogenotrophica DSM
           10507]
          Length = 351

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 128/287 (44%), Gaps = 34/287 (11%)

Query: 38  SYECDTRQFLIFL-----AFYTE--EKITIQTIRQLSYTEI-------RAFISKRRTQKI 83
           SY  D R F  +L      F     ++ T+  + QL   +I       + + ++ +T   
Sbjct: 48  SYAYDIRVFFQYLLEENPTFKNRPMDQFTVDILDQLQVLDIEEYQEYLKVYQNQNKTTTN 107

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
           G+R LKR +S ++SF  Y  KR++  T  + +++M  L +  ++ R   ++ AL L  + 
Sbjct: 108 GERGLKRKMSSLRSFYAYYYKREMIETNPTLLVDMPKLHQ-KAITRLDADEVALLL--DY 164

Query: 142 LLHTSHE--------TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           + H   E         +    R+ A++ LL G G+R+SE + L  +++    + +++  K
Sbjct: 165 IEHAGDELTGQKKVYYEKTKERDLALVTLLLGTGIRVSECVGLDVEDLDFKNNGIKVTRK 224

Query: 194 GDKIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           G    IV     V  A+  Y     ++ P    +  +  LF   + K L     +  +++
Sbjct: 225 GGGEMIVYFGSEVETALRRYLKARDNITPV---VGHEHALFYSTQRKRLGVQAVENLVKK 281

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
               +      T H LR ++ T L    GD+  +  +LGH  ++TT+
Sbjct: 282 YASQITTTKKITPHKLRSTYGTALYQETGDIYLVADVLGHRDVNTTK 328


>gi|89147667|gb|ABD62692.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 41/61 (67%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           G+ Q  + +  R  G+      H+LRHSFATHLLS G D+R++Q +LGH  +STT IYT+
Sbjct: 102 GILQSALNRAVRAGGIVKRANCHSLRHSFATHLLSKGYDIRTVQELLGHKDVSTTMIYTH 161

Query: 301 V 301
           V
Sbjct: 162 V 162


>gi|297627411|ref|YP_003689174.1| Phage integrase:Phage integrase, N-terminal SAM-like
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296923176|emb|CBL57769.1| Phage integrase:Phage integrase, N-terminal SAM-like
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 313

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 132/293 (45%), Gaps = 18/293 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ++L E + WL     ER   + T  +Y      F+ +L    EE     ++R+L+   + 
Sbjct: 14  DVLDEFERWLLQ---ERSAQECTAAAYTARVAAFVEWLPAPVEE-----SLRKLTAAMLI 65

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK--RKITTESNILNMRNLKKSNSLPRALN 130
            ++     + +   +L + L  ++SFL+Y  +  R     S ++      + +S+P  + 
Sbjct: 66  EWVDLEAARGLKASTLGKQLVMLRSFLQYAHRSGRMGQDLSGVVPHAAAWRLSSIPDPVP 125

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
                 L D + L +         R+ AIL LL G GLR  E   L   +I     +LRI
Sbjct: 126 AGTIEALFDTLDLRSPKGL-----RDRAILLLLTGLGLRACEIAGLRLDDIGWRTGSLRI 180

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQ 249
           +GKGD++  +PL   V  A LE Y L      +  +   +  I   +PL+       IRQ
Sbjct: 181 RGKGDRVDELPLPDEVGHA-LEDYVLHGRGGRVQGEEVFWTVIDPVQPLSANGVCGTIRQ 239

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +    G+      H LRH+FAT +L+ G  L+ +Q +L H  L TT +Y  V+
Sbjct: 240 ICIKAGVE-KFGPHRLRHTFATGMLATGATLQEVQGLLRHAHLRTTALYAKVD 291


>gi|168178695|ref|ZP_02613359.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum NCTC 2916]
 gi|182671520|gb|EDT83494.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum NCTC 2916]
          Length = 356

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 116/261 (44%), Gaps = 41/261 (15%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNL 119
           + IR +   +++  I     + +   +++  L  I +F KY++    +  E    N++  
Sbjct: 105 KKIRAMQRCDVQKIIDNFIKEGLKQSTIETYLRRINTFFKYVRDDLNLIIELPTTNIKIP 164

Query: 120 K-KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           K KSN+  +ALN+K+   L++N+  +  +           + ++    G+R+ E L LT 
Sbjct: 165 KEKSNTNKKALNKKELYNLLENLKNNKFY----------IVAFIAANTGMRLGEILGLTW 214

Query: 179 QNIMDDQSTLRIQ--------GKG--------DKIRIVPLLPSVRKAILEYYDLCPFDLN 222
            ++    +T+ +         GK         +  RI+P+  +V+  +  Y    P D+ 
Sbjct: 215 NDVDFKDNTVNVNKQWKILKNGKSGFGPVKSKNSNRIIPISKNVKNELKNYKKNNPTDI- 273

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
                      R  P +      Y+    R L    S + H LRH++AT L+S+G D ++
Sbjct: 274 ---------YNRVAPFSTNSINNYLNSKLRELA---SISLHELRHTYATLLISSGIDFKT 321

Query: 283 IQSILGHFRLSTTQIYTNVNS 303
           +  ILGH    T +IY++VN 
Sbjct: 322 VAKILGHDVEQTMRIYSHVND 342


>gi|153814903|ref|ZP_01967571.1| hypothetical protein RUMTOR_01118 [Ruminococcus torques ATCC 27756]
 gi|317500415|ref|ZP_07958639.1| phage integrase family Integrase/recombinase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331089578|ref|ZP_08338477.1| hypothetical protein HMPREF1025_02060 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847934|gb|EDK24852.1| hypothetical protein RUMTOR_01118 [Ruminococcus torques ATCC 27756]
 gi|316898170|gb|EFV20217.1| phage integrase family Integrase/recombinase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330404946|gb|EGG84484.1| hypothetical protein HMPREF1025_02060 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 366

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 123/296 (41%), Gaps = 29/296 (9%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFL-------AFYTEEKITIQTIRQLSYTEIRAF----- 74
           IE   S  T  SY  D R F  FL         YT ++ T+  I  L   +I  +     
Sbjct: 51  IEPTTSANTRISYAYDIRVFFRFLMENNPVYKNYTIDQFTLADIENLEPVDIEEYQEYLK 110

Query: 75  ISKRRTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + K   +++   ++ L R +S ++SF  Y  KR+  +++  L +   K        L+  
Sbjct: 111 VYKNDEKQVTNTEKGLARKMSALRSFYGYYFKRQAISKNPTLLVDMPKLHEKAIIRLDAD 170

Query: 133 QALTLVDNVLLHTSHETKWIDA-------RNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           + + L+D V     H T    A       R+ AIL LL G G+R+SE + L   ++  + 
Sbjct: 171 EVVRLLDYVDHGGDHLTGQKKAYFEKTRNRDLAILTLLLGTGIRVSECVGLDINDVDFEN 230

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNP 240
           + +++  KG    IV     V  A+              + LP     LF   + K +  
Sbjct: 231 NGIKVMRKGGNEMIVYFGEEVENALKT---YMYTTRRTTLPLPGHENALFLSTQRKRMGV 287

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
              +  +++  R +      T H LR ++ T L    GD+  +  +LGH  ++TT+
Sbjct: 288 QAIENMVKKYAREVTPNKKITPHKLRSTYGTSLYKETGDIYLVADVLGHKDVNTTK 343


>gi|94442264|dbj|BAE93631.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 46/74 (62%)

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           P    +R   +     Q+ +++     G+  + + H+LRHSFATHL+ +G D+R++Q +L
Sbjct: 88  PRSGAVRRHHIGESSMQKAVKRALATAGIEKNASCHSLRHSFATHLIESGTDIRTVQELL 147

Query: 288 GHFRLSTTQIYTNV 301
           GH  +STT IYT+V
Sbjct: 148 GHKDVSTTMIYTHV 161


>gi|89147598|gb|ABD62658.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 36/47 (76%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           G+  S + HT RHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 116 GIRKSGSCHTFRHSFATHLLENGQDVRTVQELLGHKDVSTTMIYTHV 162


>gi|154499004|ref|ZP_02037382.1| hypothetical protein BACCAP_02996 [Bacteroides capillosus ATCC
           29799]
 gi|150271844|gb|EDM99070.1| hypothetical protein BACCAP_02996 [Bacteroides capillosus ATCC
           29799]
          Length = 327

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 105/236 (44%), Gaps = 25/236 (10%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           + + R++ K+   +++R LS   S+  +L+      +S +  +  +K +  +     ++ 
Sbjct: 103 YQANRKSSKVTIDNIRRILS---SYFSWLEDEDYIVKSPVRRIHKVKTAKVIKETYTDEA 159

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              + DN            + R+ A++ LL   G+R+ E ++L   +I  ++    + GK
Sbjct: 160 LEIMRDNCC----------NVRDLAMIDLLASSGMRVGEMVALNRDDINFNERECVVFGK 209

Query: 194 GDKIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           G K RIV      +  +L Y     D C   L +++  P  R      L  G  +R +R+
Sbjct: 210 GSKERIVYFDARTKIHLLNYLESRTDTCSA-LFVSLTAPHDR------LQIGGVERRLRE 262

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           L + L LP     H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V  +N
Sbjct: 263 LGKRLHLP-RVHPHKFRRTLATSAIDKGMPIEQVQQLLGHQKIDTTMHYAMVKQQN 317


>gi|94442262|dbj|BAE93630.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 46/74 (62%)

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           P    +R   +     Q+ +++     G+  + + H+LRHSFATHL+ +G D+R++Q +L
Sbjct: 88  PRSGAVRRHHIGESSMQKAVKRALATAGIEKNASCHSLRHSFATHLIESGTDIRTVQELL 147

Query: 288 GHFRLSTTQIYTNV 301
           GH  +STT IYT+V
Sbjct: 148 GHKDVSTTMIYTHV 161


>gi|38637703|ref|NP_942677.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527041|gb|AAP85791.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 332

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 115/284 (40%), Gaps = 14/284 (4%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQ 81
           Q L  +R  S  T+ SY    RQFL F       + +     ++    I AF+    + Q
Sbjct: 17  QRLMQQRQASPHTISSYRDTFRQFLKFALQRLHRQPSRMNFEEIDAPLIVAFLDDLEKRQ 76

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +  RS    L+ I SF +Y         + I  +  +  S    R L +      VD +
Sbjct: 77  GVSVRSRNLRLTAIHSFFRYAALETPAHSAQIQRVLAIP-SKRFTRTLVQFLTRQEVDAL 135

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQGKGDKIRIV 200
           L      T W   R+ A L      GLR+SE   L   + ++   + +R+ GKG K R  
Sbjct: 136 LAAPDQRT-WSGRRDHAFLLFAVQTGLRLSEMTGLKRDDLVLGIGAHVRVIGKGRKERCT 194

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P++ S   A+L+ +   P     ++   LF   RG+ L     Q  + + R        +
Sbjct: 195 PIVRST-LAVLKAWLREPKRGEGDV---LFPNARGERLTVHGVQYLLNKHRETASKVCPS 250

Query: 261 ------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                 T H LRH+ A  LL  G D   I   LGH  + TTQIY
Sbjct: 251 LKHKQVTVHRLRHTMAMDLLQAGVDRSVIALWLGHESVETTQIY 294


>gi|147668708|ref|YP_001213526.1| phage integrase family protein [Dehalococcoides sp. BAV1]
 gi|146269656|gb|ABQ16648.1| phage integrase family protein [Dehalococcoides sp. BAV1]
          Length = 332

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 105/225 (46%), Gaps = 14/225 (6%)

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
           G +S+      I+ F+ +LK     T   +  +R  K    +PR + +         +L 
Sbjct: 90  GPQSVTDYFKQIRPFINWLKDNGQITVDPLKQVRLPK----VPRKVIQPFTQEHCQRLLA 145

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
             S ET + D RN A++ LL   GLR+ E   L   +I  D   +++ GKG K RIV + 
Sbjct: 146 LVSGET-FEDKRNKALILLLLDTGLRLRECTELKWSDINYDSELVKVMGKGAKERIVRIG 204

Query: 204 PSVRKAILEYYDL----CPFDLNLNIQLPLFRG-IRGKPLNP----GVFQRYIRQLRRYL 254
           P V++A+LEY  L     P D   ++ +   +     K  +P    G+ Q  +   +R  
Sbjct: 205 PKVQRALLEYQYLKIQSFPGDKTPDVWVSRHKTRYSDKECHPLTKNGIMQTIVVLGKRAG 264

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
              +  + HT RH+FAT  L NG     +QS++GH  L+ T+ Y 
Sbjct: 265 ITNIRCSPHTFRHTFATMCLRNGAGEFEVQSLMGHSTLTQTRKYA 309


>gi|294139967|ref|YP_003555945.1| phage integrase family protein [Shewanella violacea DSS12]
 gi|293326436|dbj|BAJ01167.1| phage integrase family protein [Shewanella violacea DSS12]
          Length = 152

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 47/74 (63%), Gaps = 3/74 (4%)

Query: 229 LFRGIRGKP---LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
           LF G  GKP   ++ G  Q+ ++++     +  S + H LRHS+ATHLL  G DLRS+QS
Sbjct: 50  LFPGKDGKPDSLIDKGGIQKALKRVIAECNIHKSISPHNLRHSYATHLLEQGLDLRSVQS 109

Query: 286 ILGHFRLSTTQIYT 299
           +LGH  L+TT  YT
Sbjct: 110 LLGHNSLNTTARYT 123


>gi|198282468|ref|YP_002218789.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198282805|ref|YP_002219126.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198284132|ref|YP_002220453.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218666115|ref|YP_002425003.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218666952|ref|YP_002425321.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218667875|ref|YP_002426786.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198246989|gb|ACH82582.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198247326|gb|ACH82919.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198248653|gb|ACH84246.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218518328|gb|ACK78914.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218519165|gb|ACK79751.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218520088|gb|ACK80674.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 332

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 127/292 (43%), Gaps = 23/292 (7%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRT 80
           L+ L  ER LS  T +SY      FL  ++    + +   T+  LS   IR F+S    +
Sbjct: 16  LEYLVRERNLSINTQRSYRDMLSLFLPHVSKQLNKSVDRLTVSDLSADLIRQFLSDIEES 75

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD- 139
           +     +  + L G+ +  +++       E++  ++    +   +P        +T ++ 
Sbjct: 76  RHCLAATRNQRLGGLHALARFIG------ENSPEHIEWCSQIRLIPFKKTAYPGITYLEK 129

Query: 140 ---NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
              + LL +         R+ A+L  LY  G R SEA  L   ++        I GKG+K
Sbjct: 130 PEMDALLESPDRQTPQGQRDYALLLFLYNTGARASEAADLRIVDVDWHAQCAHIIGKGNK 189

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRY-L 254
            R  PL P+     L+          L+ ++ L R   G+P+   G+     R   R  +
Sbjct: 190 RRTCPLWPTT----LDQLRALATQRGLDQRVFLNRN--GQPITRFGIHTMVERHAARACV 243

Query: 255 GLPLSTT----AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +P  +T     H +RHS ATHLL  G D+ ++++ LGH  L+TT IY   +
Sbjct: 244 QVPSMSTKQVSPHVIRHSTATHLLRAGVDINTVRAWLGHVSLTTTNIYAETD 295


>gi|119900014|ref|YP_935227.1| integrase [Azoarcus sp. BH72]
 gi|119672427|emb|CAL96341.1| putative truncated integrase [Azoarcus sp. BH72]
          Length = 66

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/52 (55%), Positives = 37/52 (71%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           G+    T HTLRHS ATHLL  G D+R++Q +LGH  +STT IYT+V +K G
Sbjct: 5   GIARHVTVHTLRHSVATHLLEGGYDIRTVQELLGHADVSTTMIYTHVLNKGG 56


>gi|224418352|ref|ZP_03656358.1| integrase-recombinase protein XERCD family [Helicobacter canadensis
           MIT 98-5491]
 gi|253827673|ref|ZP_04870558.1| integrase/recombinase XerD [Helicobacter canadensis MIT 98-5491]
 gi|313141883|ref|ZP_07804076.1| integrase-recombinase protein xercd family protein [Helicobacter
           canadensis MIT 98-5491]
 gi|253511079|gb|EES89738.1| integrase/recombinase XerD [Helicobacter canadensis MIT 98-5491]
 gi|313130914|gb|EFR48531.1| integrase-recombinase protein xercd family protein [Helicobacter
           canadensis MIT 98-5491]
          Length = 353

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 82/157 (52%), Gaps = 7/157 (4%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPL-LPSVRK 208
           + ARN  +L ++   G+R+ E+L+L  ++I  D     ++++GKG+K R+V +   ++  
Sbjct: 191 LGARNRLLLKVIIYTGIRVGESLNLKIKDITLDGDFYVIQVRGKGNKPRVVMIKAKNISN 250

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRH 267
               + +  P ++  ++   LF   +GK L      R + Q+    G+      AH LRH
Sbjct: 251 DFSLWINSRPNEVENDL---LFCNHKGKKLTQAYVSRIVEQVLLTNGIRKEKNGAHMLRH 307

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           SFAT L     DL  +Q  LGH  + T++IYT+ + +
Sbjct: 308 SFATLLYQKSQDLVLVQEALGHASVETSRIYTHFDKQ 344


>gi|196250966|ref|ZP_03149649.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|196209530|gb|EDY04306.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 304

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 141/306 (46%), Gaps = 41/306 (13%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +L E + +LQ    E+G S  T+ SY  D  QFL  L     + +T   IR+     I+ 
Sbjct: 1   MLHEYETYLQ----EKGFSPNTVISYLNDVNQFLKDLHLRPGDYVTSADIRKW----IQQ 52

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            ++    + +   ++ R L+ ++SF  +  +     ++ + ++++LK ++      + ++
Sbjct: 53  MLNPVEGKPLAISTINRRLNSLRSFYAWAVEHYKLEQNPMKDIQDLKSADE-----DNEK 107

Query: 134 ALTLVDNV---LLHTSH----ETKWIDA-----RNSAILYLLYGCGLRISEALSLTPQNI 181
            + L +     LLH       +++ +D      R+ A++YLL   GLR+ E  +L   ++
Sbjct: 108 IMWLTEEEFEDLLHRMRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDL 167

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-------LFRGIR 234
             +   +RI GKG K+R VP + ++  A LE  D   F   +  + P       +F   R
Sbjct: 168 DLEMKRIRIVGKGMKVRTVP-ISNILLAELE--DWLKFRAEMAKKKPHVAESPYVFYSQR 224

Query: 235 GKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRL 292
               +P    R I+++     LP    T H  RH+F   +L +   D+  ++ + GH  +
Sbjct: 225 ----SPKFSVRGIQRMIESYSLPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNI 280

Query: 293 STTQIY 298
           +TT  Y
Sbjct: 281 ATTSRY 286


>gi|227461209|gb|ACP39549.1| putative integron integrase [uncultured microorganism]
          Length = 286

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 41/64 (64%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+    QR ++Q  R  G+    + HT RH FATHLL +G D+R++Q +LGH  + TT I
Sbjct: 223 LHEQTVQRAVKQAVRRAGIQQPASCHTFRHCFATHLLEDGYDIRTVQELLGHSDVKTTMI 282

Query: 298 YTNV 301
           YT+V
Sbjct: 283 YTHV 286


>gi|119716408|ref|YP_923373.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119537069|gb|ABL81686.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 303

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 88/205 (42%), Gaps = 30/205 (14%)

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
           S  +Y+++ +++TES  L + +L+    L                    +   K  +  +
Sbjct: 103 SPAEYVRRPRVSTESPTLGLSHLQLEAML--------------------TAGRKSANIND 142

Query: 157 SAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
            A++ +L   GLRI EA     + +  +     LR+ GKGDKI +VPL P+V +AI    
Sbjct: 143 FALVTMLGLLGLRIFEATGANVEALEEVHGHRVLRVWGKGDKIALVPLPPAVGRAIERAV 202

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHL 273
           D            P+ R   G  ++     R +R L R  G+       H LRH+F T +
Sbjct: 203 D-------GRTGGPILRSRTGNRMDRHCATRRLRALARVAGIATDRMHPHMLRHTFVTTM 255

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIY 298
           L  G DLR +Q    H    TT  Y
Sbjct: 256 LDAGVDLRDVQIAARHADPRTTMRY 280


>gi|30908752|gb|AAP37608.1| IntI [uncultured bacterium]
          Length = 161

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 42/64 (65%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           ++P   Q+  ++  R   +P +   HTLRHS ATHLL +G D+R+I  +LGH  +STT I
Sbjct: 98  VSPSSLQKVFKEALRKTRIPKNAGPHTLRHSXATHLLQDGYDIRTIHDLLGHKEISTTMI 157

Query: 298 YTNV 301
           YT+V
Sbjct: 158 YTHV 161


>gi|323709096|gb|ADY02569.1| IntI1 integron integrase [Aeromonas media]
          Length = 310

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 78/171 (45%), Gaps = 37/171 (21%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207
           LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R         
Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDNGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198

Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                                  +A   +     F  + +   P    +R   +    FQ
Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           R  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT
Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTT 309


>gi|303235718|ref|ZP_07322325.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302484165|gb|EFL47153.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 406

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 132/301 (43%), Gaps = 49/301 (16%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q+  + + I+R L    L++Y+         L  Y  +K  +  I  +     + FI   
Sbjct: 119 QHTKERIGIDRALKTFKLRTYQSS------LLREYVNKKYKLSDIPLVGLD--KTFIEGY 170

Query: 79  RTQKIGDRSLKRS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
                 DR LKR+     LS +K+ +    K+        +   + +K+   PR + +++
Sbjct: 171 EYYLTVDRKLKRASISSTLSALKTIVSMAVKKGFLDLDPFIGY-SYEKAKGTPRNITQEE 229

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQ 191
              ++    LH     +W + R    L++ + C  GL IS+  +L  +NI+ ++  L I+
Sbjct: 230 LQKIIS---LHI----EWDNYRIVRDLFV-FSCFTGLAISDVRNLKEENIVCEEGKLCIK 281

Query: 192 GKGDKIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL----NPGVFQ 244
           GK  K +    V +LP   KAI+E Y                RG R   +       +  
Sbjct: 282 GKRVKTKTPYRVQILPPA-KAIMERY----------------RGKRAGYVFDVPTVDIVH 324

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             +  ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQ+Y  VNS
Sbjct: 325 NAMHHIQRNIGMKTPLTFHMARHTFASVITLSAGVPIETVSGMLGHTNLRTTQVYAAVNS 384

Query: 304 K 304
           +
Sbjct: 385 E 385


>gi|237722726|ref|ZP_04553207.1| site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|293373709|ref|ZP_06620056.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|301311822|ref|ZP_07217744.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3]
 gi|317473969|ref|ZP_07933248.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|229448536|gb|EEO54327.1| site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|292631364|gb|EFF49995.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|300829924|gb|EFK60572.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3]
 gi|316909811|gb|EFV31486.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 381

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 10/148 (6%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           A L+  Y CGLR+S+  +L  ++I+ D    R+     K      LP  R A+       
Sbjct: 230 AYLFACY-CGLRLSDVYALRWKDIVQDGEQYRMSTVMQKTTTPIYLPLSRHAV----RWL 284

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
           P        L +F G+  +P    V  +++       G+    T HT RH+FAT +L+ G
Sbjct: 285 PERNGAEDGLHVFAGLPAEPNINKVLAKWMATA----GINKKITYHTSRHTFATMMLTLG 340

Query: 278 GDLRSIQSILGHFRLSTTQIYTN-VNSK 304
            DL +   +LGH  + TTQIY   V+SK
Sbjct: 341 ADLYTTSKLLGHANVKTTQIYAKIVDSK 368


>gi|284097412|ref|ZP_06385523.1| tyrosine recombinase XerD [Candidatus Poribacteria sp. WGA-A3]
 gi|283831070|gb|EFC35069.1| tyrosine recombinase XerD [Candidatus Poribacteria sp. WGA-A3]
          Length = 246

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 79/185 (42%), Gaps = 17/185 (9%)

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-------RIQGKGDKIRIVP 201
           T   + RN  +  L    G RISE LSLT  ++  +   +        I   G+  R VP
Sbjct: 20  TGMFEIRNRGLFMLGVSTGGRISELLSLTIGDVYQNGRPVTDLLYSKNIVKGGEVSRAVP 79

Query: 202 LLPSVRKAI-------LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +    R+A+       ++YY +   D  L    P   G   K L+       ++      
Sbjct: 80  VNRDGRQAVDDLISWHIDYYGMTEADRPL---FPSRNGQGQKALSRREAHDVLKVAFEAA 136

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           GL      H+LR SFA  L    GD+ ++Q +LGH  ++TTQ Y  VN  N  D + +I 
Sbjct: 137 GLNGHIATHSLRKSFAQRLYEQTGDIFAVQEMLGHQSVATTQKYLGVNYANVRDALEQIS 196

Query: 315 DQTHP 319
             T P
Sbjct: 197 VSTEP 201


>gi|322381501|ref|ZP_08055481.1| site-specific tyrosine recombinase XerC-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154543|gb|EFX46839.1| site-specific tyrosine recombinase XerC-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 314

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 123/292 (42%), Gaps = 28/292 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFL--AFYTEEKITIQTIRQLSYTEIRAFIS 76
           Q+++ +L I   L+  TL+ Y  D + F+ +   A Y EE I  +     + T  R   +
Sbjct: 29  QDFIHSLTIHEDLNPKTLKEYASDLKHFIGWFETANYQEENIVFRIEDVATPTLTRYQEA 88

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            ++  ++   ++ R L  +K F ++     I        ++ + +    PR + +K+   
Sbjct: 89  SQKVMELKPATINRRLITLKRFFEWAASNSIIRRDPSKPVKLVPEEKVSPRQMTDKEE-- 146

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
             D ++    H       R+  IL ++   GLR  E   L P +I   + T+R  GK +K
Sbjct: 147 --DALIAAAEHGGSL---RDQTILIVMLHTGLRTMEVCDLAPGDIQIGKLTVR-SGKRNK 200

Query: 197 IRIVPLLPSVRKAILEYYDLCP------FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            R VPL  + R A+ +Y    P      F           R +R       + Q+Y+++ 
Sbjct: 201 QREVPLNATCRSALEKYLVYLPPGSPYLFPSEKTGDRLSERALR------HLIQKYMKKA 254

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            R  GL    +AH LRH F  ++++    L  +  I+GH    T  IY    
Sbjct: 255 -RLKGL----SAHDLRHRFG-YVMAVNTPLHRLAQIMGHDSPDTMMIYVKAT 300


>gi|313667356|ref|YP_004049757.1| integrase family protein [Oceanithermus profundus DSM 14977]
 gi|313153987|gb|ADR37837.1| integrase family protein [Oceanithermus profundus DSM 14977]
          Length = 345

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 104/220 (47%), Gaps = 14/220 (6%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT--LVDNVLLHTSHET 149
           LSG+++F + L       ++    +R  +  +  PR+   + AL   L   +L H S + 
Sbjct: 117 LSGLRAFYRALVWAGAVAKNPAAEVRAPR--DPTPRS-ERRPALPYPLYIRLLEHLSGDE 173

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRK 208
                R+ A++ L+   GLRI+E  +L  +++ + +   +   GKG K R VP+  ++  
Sbjct: 174 A-QQVRDRAVIRLMGDAGLRIAEVEALDVKDVDLGEHVVVVRAGKGGKQRTVPMTRALSS 232

Query: 209 AILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS-TTA 262
           A++E+  +      P +  L + L   R  +G+ L     +R++    R LG P     A
Sbjct: 233 ALVEWLGVRRAYAAPGEEALFVNLG-GRKAKGRRLRAHSIRRFLEGYYRELGFPERYRGA 291

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           HTLRH   T       D+  + ++LGH  + T+ +Y  ++
Sbjct: 292 HTLRHLAGTRFYQASRDIHVVAALLGHENVGTSTVYAKMD 331


>gi|83956466|ref|ZP_00964886.1| putative integrase/recombinase [Sulfitobacter sp. NAS-14.1]
 gi|83839321|gb|EAP78509.1| putative integrase/recombinase [Sulfitobacter sp. NAS-14.1]
          Length = 329

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 132/312 (42%), Gaps = 32/312 (10%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           ++L  ER  S  T  +Y    +  + F A    ++  +  I  +    I AF+     ++
Sbjct: 14  EHLPHERRASVHTCDAYAYSFQLLVTFAAGRLRKRPCLLQIEDIDVPTILAFLEH--IEQ 71

Query: 83  IGD---RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPRALNEKQALT 136
           + D   RS    L+ +KSF +YL+ R        L +  +   K    L  +L+  +   
Sbjct: 72  VRDNKARSRNARLAAVKSFFRYLEHRVPAVLDQALRVHAIPMKKIDQGLVASLSRAEVQA 131

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKG 194
           L+D     T+        R+ A+L+L +  GLR+SE + +   +  D +S  ++ I GKG
Sbjct: 132 LLDAPDRRTASGI-----RDRAMLHLAFSGGLRVSELVGVG-LDQFDGRSPASIHIIGKG 185

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI--RQLRR 252
            + R++PL      A+  +  + P   +      LF     + +    F+ YI  +    
Sbjct: 186 RRERVLPLWQETAAAMRAWIAIRPEVGDTA----LFLNNADRMMTRSGFE-YILKKHAAA 240

Query: 253 YLGLPL-----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
             G+       S T H LRHS A H+L    D+R +   LGH  L +T+IY   +     
Sbjct: 241 AAGIAPTLATKSITPHVLRHSCAMHMLQATRDIRKVALWLGHATLQSTEIYLRADPTEK- 299

Query: 308 DWMMEIYDQTHP 319
              +E+ D   P
Sbjct: 300 ---LEMLDALAP 308


>gi|262042628|ref|ZP_06015784.1| phage integrase family site-specific recombinase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259040062|gb|EEW41177.1| phage integrase family site-specific recombinase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 276

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 99/224 (44%), Gaps = 29/224 (12%)

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKKSNSLPRALNEKQALTL 137
           R + +  R++   L+  ++    LK+    T  N L N+R  K +      L  ++A  L
Sbjct: 38  RVKAVPPRTVNLELAYFRAMFNELKRLDDWTAPNPLENVREFKIAEIELAWLTVEEAARL 97

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++        ++K  D   + I+ +    G R  EA SLT + I   + T  I+ KG K 
Sbjct: 98  LEEC-----EKSKAEDL--TMIVKICLATGARWGEAESLTGKQISPGKITF-IKTKGKKN 149

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGL 256
           R VP+         E Y+L P            +    KPL  G +  +   ++R  + L
Sbjct: 150 RAVPISE-------ELYELLP------------KSRTSKPLFTGCYSAFRSAIKRAGIEL 190

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           P    +H LRH+FA+H +  GG++  +Q ILGH  +  T  Y +
Sbjct: 191 PDGQLSHVLRHTFASHFMMGGGNILVLQRILGHTDIKVTMRYAH 234


>gi|237736957|ref|ZP_04567438.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817]
 gi|229420819|gb|EEO35866.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817]
          Length = 292

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 131/298 (43%), Gaps = 19/298 (6%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           + E+ ++ + K+ +++L   E     S  T++S + D  Q    LA Y  E   +     
Sbjct: 1   MVEMANWNIEKDIKDFLYFEEFGNNKSPNTIKSMKKDLFQ----LAEYLNEIEKVDNCMA 56

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +    IR FI   +   I  R++ R LS ++SF KYL + K   +S +  + +       
Sbjct: 57  IDSVMIRGFIINLQENGITKRTINRKLSSLRSFFKYLVREKRINQSPVEVIASPSFYTQK 116

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-D 184
           P  L  ++   L + + L  ++       R+  IL LLY  G+   E L +  + + D D
Sbjct: 117 PDILTLEEINKLREVISLKNAN-----GLRDRLILELLYSSGITSVEMLGV-GEGVFDLD 170

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEY----YDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           +  L +   G   R+V      R+    Y     +      N +I   LF       L+ 
Sbjct: 171 KRELYVSN-GKSRRVVFFSERTREFFKRYIKAKKEKYKEKYNPDI---LFVNGSATRLSD 226

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              +R I +     G+    + ++ RH+FA H+LS+G D+  ++ ++GH  L +T++Y
Sbjct: 227 RSLRRIIDRYAVKAGIEREISPYSFRHTFAVHMLSHGMDILYLKELMGHVTLESTKVY 284


>gi|167465690|ref|ZP_02330779.1| phage integrase family protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 301

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 124/295 (42%), Gaps = 28/295 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFL--AFYTEEKITIQTIRQLSYTEIRAFIS 76
           Q+++ +L I   L+  TL+ Y  D + F+ +   A Y EE I  +     + T  R   +
Sbjct: 16  QDFIHSLTIHEDLNPKTLKEYASDLKHFIGWFETANYQEENIVFRIEDVATPTLTRYQEA 75

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            ++  ++   ++ R L  +K F ++     I        ++ + +    PR + +K+   
Sbjct: 76  SQKVMELKPATINRRLITLKRFFEWAASNSIIRRDPSKPVKLVPEEKVSPRQMTDKEE-- 133

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
             D ++    H       R+  IL ++   GLR  E   L P +I   + T+R  GK +K
Sbjct: 134 --DALIAAAEHGGSL---RDQTILIVMLHTGLRTMEVCDLAPGDIQIGKLTVR-SGKRNK 187

Query: 197 IRIVPLLPSVRKAILEYYDLCP------FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            R VPL  + R A+ +Y    P      F           R +R       + Q+Y+++ 
Sbjct: 188 QREVPLNATCRSALEKYLVYLPPGSPYLFPSEKTGDRLSERALR------HLIQKYMKKA 241

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            R  GL    +AH LRH F  ++++    L  +  I+GH    T  IY      +
Sbjct: 242 -RLKGL----SAHDLRHRFG-YVMAVNTPLHRLAQIMGHDSPDTMMIYVKATRSD 290


>gi|313126748|ref|YP_004037018.1| site-specific recombinase xerd [Halogeometricum borinquense DSM
           11551]
 gi|312293113|gb|ADQ67573.1| site-specific recombinase XerD [Halogeometricum borinquense DSM
           11551]
          Length = 311

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 104/240 (43%), Gaps = 28/240 (11%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK-------QALTLVD 139
           SLK + +GI  F   +       + +I +   +KK +   ++L +        +   LVD
Sbjct: 65  SLKIARAGIAKFYDEMYDYNPVEDVSIGSWTAVKKGSKKSQSLRDDVHYLTPDEVQQLVD 124

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIR 198
           NV  H+  +      RN  I+ +L+  G+R  E   +   ++  ++ ++RI   K    R
Sbjct: 125 NV--HSPPKL-----RNELIIKMLFQTGMRRGELCKVKLHDVNREERSIRIHADKTHSNR 177

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGL- 256
            V   PS+   +  + D     +      P LF   + + + P    R +R+     G+ 
Sbjct: 178 TVYYQPSLSTPLNIWIDAERNGVLTADDSPHLFPTQKAEHIKPNSVSRIVREAAEEAGIQ 237

Query: 257 -----------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
                          T HTLRHSFA   L NG D+R++Q ++GH  + TTQ+Y ++   +
Sbjct: 238 EVMYHDKGGRPKRKITGHTLRHSFAVAALKNGMDVRTLQKLMGHADIETTQMYLDLADDD 297


>gi|325001050|ref|ZP_08122162.1| integrase family protein [Pseudonocardia sp. P1]
          Length = 348

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 124/316 (39%), Gaps = 50/316 (15%)

Query: 29  RGLSKLTLQSYECDTRQFLIFL---------AFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           RGL ++T+   E   R+F+ F          A   E   ++   R L+   IR +    R
Sbjct: 16  RGLREVTMARREQLVRRFVAFTNEYPWDWSPAHVDEWSQSLVGERHLALASIRGYQGSLR 75

Query: 80  T--QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +    I D     +++  K F        I  E N +   +  + +   R    ++    
Sbjct: 76  SFSDYITDGRYGWAVACEKQFGPGRHPVPICHEWNTIAHLDDYEGSPEARPFTREELQRF 135

Query: 138 VDNV------LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-- 189
           +D         +    +      R++ +  ++YG GLR +E   L   +   + +     
Sbjct: 136 LDYADDQVGRAVTAKRKGALAAYRDATLFKVIYGWGLRRTETAQLDLADWGRNPAAAEFG 195

Query: 190 ------------IQGKGDKIRIVP-LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--- 233
                       ++G+  + R VP ++    +A+ +Y D        NI+ P F G    
Sbjct: 196 RFGMLHVRYGKAVRGQPPRRRNVPSIMGWAVEAVADYVD--------NIR-PRFGGAERP 246

Query: 234 ------RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                 RG  L P          R  LGLP   + H+LRHS+ THL  +G D R IQ  +
Sbjct: 247 GLWVTERGGRLKPVEINARFAAYRDALGLPRELSPHSLRHSYVTHLTEDGVDRRFIQEAV 306

Query: 288 GHFRLSTTQIYTNVNS 303
           GH   ++T IYT+V+S
Sbjct: 307 GHRCDTSTAIYTHVSS 322


>gi|291550383|emb|CBL26645.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 356

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 122/297 (41%), Gaps = 30/297 (10%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAF-------YTEEKITIQTIRQLSYTEIRAF----- 74
           +E   S  T  SY  D R F  FL         YT E+  +  + +L   +I  +     
Sbjct: 40  VEPTTSARTRISYAYDIRVFFHFLMENNPVYKNYTIEQFEVHDLERLEPVDIEEYQEYLK 99

Query: 75  ISKRRTQKI---GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           + K   +K     ++ L R +S ++SF  Y  KR+I +++  L +   K        L+ 
Sbjct: 100 VYKNDEEKCITNTEKGLARKMSALRSFYGYYFKRQIISKNPTLLVEMPKMHEKAIIRLDT 159

Query: 132 KQALTLVDNVLLHTSHETKWIDA-------RNSAILYLLYGCGLRISEALSLTPQNIMDD 184
            +   L+D V     + T    A       R+ AIL LL G G+R+SE + L  Q+I   
Sbjct: 160 DEIAMLLDYVDHGGDNLTGQRKAYFEKTKNRDLAILTLLLGTGIRVSECVGLDLQDIDFK 219

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLN 239
            + + +  KG    +V     V  A+  Y         P   + N    LF   + K + 
Sbjct: 220 NNGITVTRKGGNQMVVYFGEEVENALKTYLYTTRKQAIPLSGHEN---ALFLSTQRKRMG 276

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
               +  +++  R +      T H LR ++ T L    GD+  +  +LGH  ++TT+
Sbjct: 277 VQAVENMVKKYAREVTPNKKITPHKLRSTYGTALYKETGDIYLVADVLGHKDVNTTK 333


>gi|156138689|dbj|BAF75921.1| integron integrase [uncultured bacterium]
          Length = 180

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 41/68 (60%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R   ++    Q+ I    R  GL      HTLRHSFATHLL  G D+R+IQ +LGH  +
Sbjct: 113 VRRHHIHETTVQKAITDAVRRAGLSKPAGCHTLRHSFATHLLEVGQDIRTIQELLGHSDV 172

Query: 293 STTQIYTN 300
           STT IYT+
Sbjct: 173 STTMIYTH 180


>gi|298250834|ref|ZP_06974638.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297548838|gb|EFH82705.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 309

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 130/287 (45%), Gaps = 27/287 (9%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           +QN+  +  L+  + ++Y  D + F  +LA      +++ ++ + +    R  +++   Q
Sbjct: 22  MQNVAGQ--LAPSSRKTYTIDAKHFAHWLA---GRDLSLTSLNRDNLVAYRTHLAETYAQ 76

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQALTLVDN 140
                +  R  +  +  L    +R +  ++    +R  K  +   P AL  ++A  L+D 
Sbjct: 77  S----TAARMWAVARRLLDEAVQRGLLLKNPAEGVRGFKTGDDESPHALKREEAKALLDA 132

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGDKI 197
           +   T+     +  R++A+L LL   G+R +EA++LT  ++M +Q     +   GKG K 
Sbjct: 133 IDRRTA-----LGKRDNALLMLLLRTGIRRAEAVALTIGDLMMEQGYHIVIIRHGKGKKR 187

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG------KPLNPGVFQRYIRQLR 251
            +  L   VR+AI +Y +          + PLF   R       +PL+P    R ++Q  
Sbjct: 188 GLAKLPVEVRQAIDDYLEAVGRACAAP-EAPLFISFRKGDHPQERPLHPNQVGRIVKQRA 246

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           + +G+ +S   H +R SF T     G DL  +Q    H    TT+ Y
Sbjct: 247 QVVGIVMSP--HGMRASFITLAFEGGADLALVQDGARHKDPRTTRRY 291


>gi|223369828|gb|ACM88783.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 38/59 (64%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            Q  ++   R  G+    + HT RHSFATHLL NG D+R++Q +LGH  + TT IYT+V
Sbjct: 104 LQSAVKVAVRAAGIAKPASCHTFRHSFATHLLENGYDIRTVQELLGHANVKTTMIYTHV 162


>gi|197301719|ref|ZP_03166789.1| hypothetical protein RUMLAC_00445 [Ruminococcus lactaris ATCC
           29176]
 gi|197299159|gb|EDY33689.1| hypothetical protein RUMLAC_00445 [Ruminococcus lactaris ATCC
           29176]
          Length = 375

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 123/297 (41%), Gaps = 30/297 (10%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAF-------YTEEKITIQTIRQLSYTEIRAFISKRR 79
           +E   S  T  SY  D R F  FL         YT ++ T+Q + +L   +I  +    +
Sbjct: 59  VEPTTSARTRISYAYDIRVFFHFLMEVNPHYKNYTIDQFTVQDLERLDPVDIEEYQEYLK 118

Query: 80  TQKI--------GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
             K          ++ L R +S ++SF  Y  KR+I +++  L +   K        L+ 
Sbjct: 119 VYKNEEDRQITNTEKGLSRKMSALRSFYGYYFKRQIISKNPTLLVDMPKLHEKAIIRLDT 178

Query: 132 KQALTLVDNVLLHTSHET-------KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
            +   L+D V     + T       +    R+ AIL LL G G+R+SE + L  Q++   
Sbjct: 179 DEIAMLLDYVEHGGENLTGQRLAYYEKTKNRDLAILTLLLGTGIRVSECVGLDVQDVDFK 238

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLN 239
            + +++  KG    +V     V  A+  Y         P   + N    LF   + K + 
Sbjct: 239 NNGIKVTRKGGNEMVVYFGEEVEHALKTYLYTTRKSTVPLSGHEN---ALFLSTQRKRMG 295

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
               +  +++  R +      T H LR ++ T L    GD+  +  +LGH  ++TT+
Sbjct: 296 VQAVENMVKKYAREVTPNKKITPHKLRSTYGTALYKETGDIYLVADVLGHKDVNTTK 352


>gi|168699006|ref|ZP_02731283.1| Integron integrase [Gemmata obscuriglobus UQM 2246]
          Length = 322

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 84/186 (45%), Gaps = 39/186 (20%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYY--- 214
           +  + YG GLR+ E L L  +++  D + L ++G KGDK R   +LP V + +LE++   
Sbjct: 128 VALIQYGSGLRLLECLRLRVKDVEWDLNQLVVRGGKGDKDRRT-MLPQVCRGLLEWHLAD 186

Query: 215 -------DLC-------------------PFDLNLNIQLPLFR--------GIRGKPLNP 240
                  DL                    P         P  R          R   L+ 
Sbjct: 187 VRKLHQEDLANGLGAVYVPKAFAAKNPAAPTAWAWQYVFPAHRLSVDPRSGAARRHHLHE 246

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               R +    R  G+    T+H+ RHSFATHL+ +G D+R++Q +LGH  + TT IYT+
Sbjct: 247 SGMNRVLADAVRDAGVDKRVTSHSFRHSFATHLIESGTDIRTVQELLGHESVETTMIYTH 306

Query: 301 VNSKNG 306
           V +K G
Sbjct: 307 VLNKGG 312


>gi|150402206|ref|YP_001329500.1| phage integrase family protein [Methanococcus maripaludis C7]
 gi|150033236|gb|ABR65349.1| phage integrase family protein [Methanococcus maripaludis C7]
          Length = 282

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 128/289 (44%), Gaps = 39/289 (13%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           LE   GLSK T+ SY+   R F         +K   +  R +   ++  F +  +  K  
Sbjct: 10  LEFCTGLSKSTINSYKYGLRTF---------QKYANKRWRDVMVNDVILFYTNHKATKNS 60

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVDNVLL 143
             S+   L  +  F  +  + K   ++ +   ++ L++       L   QA  L+ N+  
Sbjct: 61  KMSV---LGTVSRFYDWGIEEKYLLDNPVKKFLKTLRREKKERNYLTTSQANYLLSNIKR 117

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIV-- 200
           +  +           I   +   G+RISE ++L  Q++ +D +      GKG K R V  
Sbjct: 118 YDYY----------VITMFILKTGVRISELVNLKVQDVDLDSKIAFIGSGKGKKDRYVFF 167

Query: 201 --PLLPSVRKAILE--YYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
              L   +R+ I E  Y D  C      N+ L ++RG      +  +++ YI ++     
Sbjct: 168 DRDLAFHLREYIKERSYRDPKCD-----NLFLGVYRG-HFSQRSLTLYKEYINEVAP--N 219

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + +  T H LRH+FAT +L  G DL+S+  ILGH  LSTT IY + N +
Sbjct: 220 IHIRITPHILRHTFATSMLERGIDLKSLSLILGHEDLSTTSIYLHKNKE 268


>gi|38637711|ref|NP_942685.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527049|gb|AAP85799.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 410

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 124/287 (43%), Gaps = 27/287 (9%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  ERGL+  T++ Y      FL       +       +  LS  EI  F+    TQ  G
Sbjct: 126 LHQERGLAATTIRKYRWCAHLFLT-----KQFGDGATRLSDLSAREIIDFVQHEATQSPG 180

Query: 85  -DRSLKRSLSGIKSFLKYLKKR---KITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +S+ + L   +SFL+Y + R   K+   + I  + +   + S+P+A++ + A      
Sbjct: 181 RAQSIAKVL---RSFLQYARYRGLIKLDLAAAIPRVAHWSMA-SIPKAISPEYA-----R 231

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L +    + +  R+ AIL LL   GLR  E +SLT  +I  +  TL I GKG +   +
Sbjct: 232 RALASCDRRRPVGRRDYAILLLLARLGLRSGEVVSLTLDDIDWETGTLNIHGKGGQESPL 291

Query: 201 PLLPSVRKAILEY-----YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           PLL  V +AI +Y      D     + L I  P    IRG      V       L R   
Sbjct: 292 PLLAPVGEAIADYLKNGRADSESRSVFLRINAP----IRGFKTEKAVCNVVRYALERAGI 347

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             L    H  RH+ AT +L  G  L  I  +L H    +T+IY  V+
Sbjct: 348 DSLRKGTHQFRHALATQMLRQGSSLAEISEVLRHKSPDSTRIYAKVD 394


>gi|89147484|gb|ABD62602.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 41/68 (60%)

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   L+  V Q  + Q  R   +    T HTLRHSFATHLL NG ++R +Q +LGH  + 
Sbjct: 95  RRHHLSEKVMQTALHQAVRESDIAKHVTVHTLRHSFATHLLLNGTNIREVQELLGHKNVE 154

Query: 294 TTQIYTNV 301
           TT IYT+V
Sbjct: 155 TTMIYTHV 162


>gi|89147602|gb|ABD62660.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 41/61 (67%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           G+ Q  +++     G+      H+LRHSFATHLLS G D+R++Q +LGH  +STT IYT+
Sbjct: 102 GILQTALKRAVDVAGIVKRANCHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTH 161

Query: 301 V 301
           V
Sbjct: 162 V 162


>gi|154498614|ref|ZP_02036992.1| hypothetical protein BACCAP_02604 [Bacteroides capillosus ATCC
           29799]
 gi|150272353|gb|EDM99547.1| hypothetical protein BACCAP_02604 [Bacteroides capillosus ATCC
           29799]
          Length = 285

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 105/233 (45%), Gaps = 25/233 (10%)

Query: 74  FISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK---SNSLPRAL 129
           +IS   T K + +RS+   L+ + SF  YL     T E  +L+ ++  K   + + P  +
Sbjct: 59  YISYLHTVKGLSNRSVNAKLASLHSFNLYLIAAGYTKEV-VLDKQDYLKVQLAYASPSTV 117

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           + ++       +L  +         R+ AI+ +L   GLRISE L+L  ++I      ++
Sbjct: 118 SREEVERFRQEILERSG-------VRDYAIVTILAYAGLRISECLALRVEDISLPAREIK 170

Query: 190 I-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYI 247
           +  GKGDK+R+V     V  A+ EY    P   N     P LF G     L      R  
Sbjct: 171 VRHGKGDKMRVVYFGDKVVNAVREYLRNRPKTGN-----PYLFPGRGDSHLTRSQVNRIF 225

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            +         S T HTLRH F ++ L NG  +  + +  GH  + TT +YTN
Sbjct: 226 NEYSE------SITPHTLRHFFCSNALENGYTIADLANQAGHSNVHTTLLYTN 272


>gi|187935337|ref|YP_001886583.1| DNA integration/recombination protein [Clostridium botulinum B str.
           Eklund 17B]
 gi|187723490|gb|ACD24711.1| DNA integration/recombination protein [Clostridium botulinum B str.
           Eklund 17B]
          Length = 337

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 104/231 (45%), Gaps = 12/231 (5%)

Query: 71  IRAFISKRRT--QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           ++A I KR    +K+   +L   L  IK F  YL++ +I  E+ +   + +K        
Sbjct: 86  VKANIDKRTDIGEKVSTSTLNNYLRNIKVFFSYLEENQIIRENTVKKCKYIKNERKSKEQ 145

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L + +      N L+ +   TK+ + R+  I  L++  G+R++E L+LT  ++   + T+
Sbjct: 146 LTDNEF-----NKLIKSMDLTKFHEYRDYVITNLIFDTGMRLNETLNLTINDVDFTRRTI 200

Query: 189 RIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            I     KG K R+V    ++ K +  +           +  P  R      L+   F+R
Sbjct: 201 MIDSQISKGRKDRVVFYSQTMSKLLQRWLRFKDTMQETELLFPTQRT--NGVLSVSNFER 258

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
             R   +   +  S T H LR++FA   L    D+ ++  ILGH  ++ T+
Sbjct: 259 NFRIYLKRAKINKSITPHGLRNNFARRFLLASSDIHTLSKILGHSSVTVTE 309


>gi|301596538|ref|ZP_07241546.1| IntI1 integrase [Acinetobacter baumannii AB059]
          Length = 200

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 41/65 (63%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V 
Sbjct: 113 FQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVL 172

Query: 303 SKNGG 307
              G 
Sbjct: 173 KVGGA 177


>gi|291521086|emb|CBK79379.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 340

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 103/228 (45%), Gaps = 14/228 (6%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L+ ++++L Y     I+ +S  L+  ++     L     EKQ +   D   L  +     
Sbjct: 90  LAALRAYLWYASDMDISLQSIALSASHVP---FLKEPKKEKQIIQDEDMKALLAAPPDTQ 146

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
              R+  I+ LLY   +RI+E L L   ++ +    ++ I GKGDK R V +  +    +
Sbjct: 147 KGNRDRMIMILLYDTAIRITELLELKISSLKLTSVPSIHIHGKGDKERSVSITDATLSHL 206

Query: 211 LEYYDLCPFDLNLNIQLPLF-RGIRGK--PLNPG----VFQRYIRQLR-RYLGLPLSTTA 262
            +Y  L  F   +    PLF   I+G   P++PG    +  +Y   +R  +  LP     
Sbjct: 207 KKY--LRQFLSEMLPNQPLFYMKIKGSIAPMSPGNVSRIINKYADAIRPEHPNLPKHLHC 264

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           H  R + AT L  NG +L  I  ILGH    TT+IY   + +  G+ M
Sbjct: 265 HMFRRTRATGLYRNGVELEMISVILGHSSTETTRIYATPSIEMLGEAM 312


>gi|94442286|dbj|BAE93642.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 42/69 (60%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           IR   L+    Q+ +++  R  G+      HTLRH FATHLL    D+R++Q +LGH  +
Sbjct: 93  IRRHHLHESTLQKSVKKAARGCGINKRVGCHTLRHCFATHLLEASHDIRTVQELLGHAHV 152

Query: 293 STTQIYTNV 301
           STT IYT+V
Sbjct: 153 STTMIYTHV 161


>gi|301166953|emb|CBW26532.1| putative integrase/tyrosine recombinase [Bacteriovorax marinus SJ]
          Length = 317

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 120/286 (41%), Gaps = 35/286 (12%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI---RAFISK---RRTQKIGDRSL 88
           T +SYE D R F      +  E+  I +   L    I   R F+ +   R       +++
Sbjct: 28  TRRSYEIDIRHFFS----WAHEQFNISSYGDLERDHIIKYRNFLQEAGGRDGSPCAPKTV 83

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEKQALTLVDNVLLHTSH 147
            R L+ + S+  +L +R I   + + +++  ++    P  AL+  Q   L++ +   T  
Sbjct: 84  ARKLAALSSYSDFLVERSILEFNPVTSIKRPRRDVKTPTNALSGTQVRELLEAIPGDTP- 142

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPS 205
                   + A+L + +  GLR SE L+L  ++   +++   L   GKG KI    L P 
Sbjct: 143 ----AGILHRALLMMFFTTGLRKSEILNLKFKDYREINEYRVLEFIGKGGKIGQKVLHPD 198

Query: 206 VRKAILEYYDLCPFDL-----NLNIQLPLFRGIRG--------KPLNPGVFQRYIRQLRR 252
                +E  DL   ++      L  +  LF+            KPLNP      I    +
Sbjct: 199 A----VELLDLYLVEMQRQGRELGQEDWLFQPSHNPTNPQNLNKPLNPRTINEIIDYYAK 254

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            +GL    T H+ R +F   LL NG D+ S+   + H  + TTQ Y
Sbjct: 255 KIGLNFKVTPHSCRATFIGELLENGVDIYSVAREVNHSSVKTTQEY 300


>gi|94442260|dbj|BAE93629.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 42/69 (60%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           IR   L+    Q+ +++  R  G+      HTLRH FATHLL    D+R++Q +LGH  +
Sbjct: 93  IRRHHLHESTLQKSVKKAARGCGINKRVGCHTLRHCFATHLLEANHDIRTVQELLGHAHV 152

Query: 293 STTQIYTNV 301
           STT IYT+V
Sbjct: 153 STTMIYTHV 161


>gi|310829805|ref|YP_003962162.1| hypothetical protein ELI_4257 [Eubacterium limosum KIST612]
 gi|308741539|gb|ADO39199.1| hypothetical protein ELI_4257 [Eubacterium limosum KIST612]
          Length = 304

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 129/305 (42%), Gaps = 59/305 (19%)

Query: 19  QNWLQNLEIE-RGLSKLTLQSYE-CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           + WL   E + +G S  T +SYE    R FL  L  Y  E   I T +Q      RAF  
Sbjct: 8   ETWLGEQEADVKGSSLKTYKSYERVHIRPFLGHL--YLAE---ITTKKQ------RAF-K 55

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-----RALNE 131
           K+  + + D++++  LS +++ LK  K++  T            +   +P     +AL+E
Sbjct: 56  KQLCESLADKTVRDILSYLRTLLKRAKQKGYTVCIKTPKTAVEWREKEVPDFQEHKALSE 115

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           K              H  K +D     IL L    GLR+ E L L  +++    S L ++
Sbjct: 116 K------------LRHSQKPVDM---GIL-LAMSTGLRLGEVLGLRVKDVDLRASVLHVR 159

Query: 192 GKGDKI---------------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
               +I                     R +PL P+++ A+  Y        N + + PL 
Sbjct: 160 ANRQRIYDPKTNTYPVREQTPKTQKSCRSIPLHPALKNALAHYLKNMG---NPDKEKPLI 216

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
              +G+  +    QR  + +++ LGL    T H+LRHSFAT  L  G  + ++  +LGH 
Sbjct: 217 ANRQGRAYDARTLQRRFQAVKKELGLRPGVTFHSLRHSFATRALELGASIHTLSELLGHS 276

Query: 291 RLSTT 295
            ++ T
Sbjct: 277 SVAFT 281


>gi|229826012|ref|ZP_04452081.1| hypothetical protein GCWU000182_01376 [Abiotrophia defectiva ATCC
           49176]
 gi|229789754|gb|EEP25868.1| hypothetical protein GCWU000182_01376 [Abiotrophia defectiva ATCC
           49176]
          Length = 331

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 109/248 (43%), Gaps = 23/248 (9%)

Query: 63  IRQLSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           +R+++  E+R ++S  ++     + ++      I SF  +L++     +S +  +  +K 
Sbjct: 92  VRKITTEEMRKYLSDYQKWNNCSNVTIDNVRRNISSFFSWLEEEDYILKSPMKRIHKIKT 151

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              +   ++++    L DN            + R+ AI+ LLY  G+R+ E ++L   +I
Sbjct: 152 KTVVKSTISDEGIEKLRDNCK----------EKRDLAIIDLLYSTGIRVGELVNLNIDDI 201

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-- 239
             +     + GKGDK R V      +  + EY D    D N  + + L       P +  
Sbjct: 202 DFEGRECIVYGKGDKERRVYFDAKAKVHLKEYVD-TRSDTNSALFVTL-----DAPYDRL 255

Query: 240 --PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
              GV  R +R+L R L +      H  R S AT  +  G  +  +Q ILGH ++ TT  
Sbjct: 256 KISGVEIR-LRELGRSLNIE-RIHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQ 313

Query: 298 YTNVNSKN 305
           Y  VN  N
Sbjct: 314 YAMVNQNN 321


>gi|114217149|dbj|BAF31251.1| integron integrase [uncultured bacterium]
          Length = 239

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 88/189 (46%), Gaps = 37/189 (19%)

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKG--DKIRIVP--LLP 204
           ++++  +     LLYG G+ I+E L L  +++  D  T+ + +GKG  D+  ++P  L+P
Sbjct: 50  RFLEGEHRLFAQLLYGTGMPITEGLLLRIKDLDFDHCTIILREGKGSEDRALMLPESLVP 109

Query: 205 SVR--------------------------------KAILEYYDLCPFDLNLNIQLPLFRG 232
           S+R                                +A   +     F  + +   P    
Sbjct: 110 SLREQLSRARAWWLKDQAEGRNGVALPDALERKYPRAGHSWPWFWVFAHHTHSTDPRSGV 169

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R   +    FQR  ++  +  G+    T HTLRHS AT LL +G D+R++Q +LGH  +
Sbjct: 170 VRRHHMYDQTFQRAFKRAVQQAGITKPATPHTLRHSLATALLRSGYDIRTVQDLLGHSDV 229

Query: 293 STTQIYTNV 301
           STT IYT+V
Sbjct: 230 STTMIYTHV 238


>gi|89147580|gb|ABD62649.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 41/61 (67%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           G+ Q  +++     G+      H+LRHSFATHLLS G D+R++Q +LGH  +STT IYT+
Sbjct: 102 GILQTALKRAVDAAGIVKRANCHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTH 161

Query: 301 V 301
           V
Sbjct: 162 V 162


>gi|89147592|gb|ABD62655.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 41/61 (67%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           G+ Q  +++     G+      H+LRHSFATHLLS G D+R++Q +LGH  +STT IYT+
Sbjct: 102 GILQTALKRAVDAAGIVKRANCHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTH 161

Query: 301 V 301
           V
Sbjct: 162 V 162


>gi|89147578|gb|ABD62648.1| integrase [uncultured bacterium]
 gi|89147604|gb|ABD62661.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 41/61 (67%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           G+ Q  +++     G+      H+LRHSFATHLLS G D+R++Q +LGH  +STT IYT+
Sbjct: 102 GILQTALKRAVDAAGIVKHANCHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTH 161

Query: 301 V 301
           V
Sbjct: 162 V 162


>gi|255029354|ref|ZP_05301305.1| transposition regulatory protein tnpB [Listeria monocytogenes LO28]
          Length = 422

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 114/271 (42%), Gaps = 31/271 (11%)

Query: 61  QTIRQLSYTEIRAFISKRRT------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
           + IR L   +I AFI   R       +K  +  L R +  ++ FL+ L+  +   E+   
Sbjct: 9   KAIRNLERKDILAFIEWTRCYYAENNRKGLENHLNRCMGVLQKFLEELQLLE-HKEAPRK 67

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           ++R L      P+    +Q  ++ D+VL        ++      I+++ +  GLRIS+ L
Sbjct: 68  SIRQLINPGDFPKYTQHRQVNSIPDSVLEQLFSNLNYLHPEVIPIVWITFKTGLRISDVL 127

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRI----VPLLPSVRKAILEYYDLCPFDLNLNIQ---- 226
           +LT + ++    +  +Q    K ++    +P+   +   I      C  + N++      
Sbjct: 128 TLTNKCLITVNESPYLQLDISKTKVHNHRIPIDTHIADIITFLAKRCELETNMDNNPKRY 187

Query: 227 -LPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTA----------HTLRHSFATHLL 274
             P   G R G+P   G    ++R+    L +  +             H  RH++A  LL
Sbjct: 188 LFPRLSGTRKGRPFTQG----FVREELNTLAIKQNIAGEDGEIYHFRMHEFRHTYAVKLL 243

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +NG D+ ++Q +L H     T +Y   +  N
Sbjct: 244 NNGADILTVQELLAHASPEMTMVYARYSDDN 274


>gi|217033667|ref|ZP_03439094.1| hypothetical protein HP9810_5g9 [Helicobacter pylori 98-10]
 gi|216943856|gb|EEC23293.1| hypothetical protein HP9810_5g9 [Helicobacter pylori 98-10]
          Length = 355

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 128/276 (46%), Gaps = 29/276 (10%)

Query: 48  IFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKR 105
           +FL F Y ++ + +++ R LS  ++  F+ +   Q     S+ + +  ++ F  YL +K+
Sbjct: 77  LFLFFDYFKDNLKLRSFRMLSEEQVIDFLFEL-AQNRKPSSMTKYVMYLRQFFDYLDRKK 135

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
               +  + N+   K   +LPR LN K     +   LL  S  T + + RN  IL ++  
Sbjct: 136 HYNFDFALKNLAFAKTKENLPRHLNYKDLKAFL-KTLLEYSPATSF-EKRNKCILLIVIL 193

Query: 166 CGLRISEALSLTPQNIMDDQS--TLRIQGKGDK-----IRIVPLLPSVRKAILEYYDLCP 218
            GLR  E L++  ++I  ++   ++ IQGKG K     I+   L PS+   I + Y L  
Sbjct: 194 GGLRKCEVLNIELKHIQVEKQNYSILIQGKGRKERKAYIKKSLLEPSLNAWISDDYRLKY 253

Query: 219 FDLNLNIQLPLFRGIRGKPLN--------PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           F+      + LF+  + K  N        P +F+  + Q++ Y      T  H  RHSFA
Sbjct: 254 FN-----GVYLFKKDKQKAQNSLTLYNFIPLIFK--LAQIKHYK--QYGTGLHLFRHSFA 304

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           T +     DL      LGH  L +T+IY +   ++ 
Sbjct: 305 TLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHN 340


>gi|89147572|gb|ABD62645.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 41/61 (67%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           G+ Q  +++     G+      H+LRHSFATHLLS G D+R++Q +LGH  +STT IYT+
Sbjct: 102 GILQTALKRAVDAAGIVKRANCHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTH 161

Query: 301 V 301
           V
Sbjct: 162 V 162


>gi|312792356|ref|YP_004025279.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312179496|gb|ADQ39666.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 314

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 106/238 (44%), Gaps = 31/238 (13%)

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           +Q I   +    L+ +K+F K+        E NIL      KSN L   L +K+A   + 
Sbjct: 65  SQPIKPATYNLRLTYLKAFFKW------CVEENIL------KSNPL-EGLPKKKAEGRIV 111

Query: 140 NV-------LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-- 190
           N+       LL    +  +   R+ A++ L    G+R  EA SL  ++   D  TL++  
Sbjct: 112 NIDTEILEKLLKLPDKNTFCGLRDYALILLTLDTGIRPKEAFSLLIEHF--DFKTLQVFI 169

Query: 191 ---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
                K    R++P+LP    A+ +   +       + ++P+F  + G+PL   ++   I
Sbjct: 170 PSNAAKTRVSRVLPILPVTANAVKKL--IAVRHPEWDEKVPVFCTVTGRPLTSDIWHGRI 227

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
               + LG+ +    + LRH+FA   L NGG   S+Q  LGH  L  T+ Y +    +
Sbjct: 228 EMYSKKLGVKIR--PYDLRHTFALLYLKNGGFELSLQKTLGHTTLEMTKRYVHFTQND 283


>gi|108799567|ref|YP_639764.1| phage integrase [Mycobacterium sp. MCS]
 gi|119868677|ref|YP_938629.1| phage integrase family protein [Mycobacterium sp. KMS]
 gi|108769986|gb|ABG08708.1| phage integrase [Mycobacterium sp. MCS]
 gi|119694766|gb|ABL91839.1| phage integrase family protein [Mycobacterium sp. KMS]
          Length = 373

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 76/180 (42%), Gaps = 21/180 (11%)

Query: 144 HTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR------------- 189
           H     +W+ A R+S    + Y  GLR  E + L   +   +    R             
Sbjct: 173 HRKGSKRWLTALRDSTAFKIGYAFGLRRRELVMLDLTDFGPNPHVPRYGNFGAMTVRWAK 232

Query: 190 -IQGKGDKIRIV---PLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVF 243
             +G G + R V   P  P V   +L+Y+     +L    +    L+   RG  L  G  
Sbjct: 233 GTKGSGPRRRTVLTSPEFPWVVD-LLQYWCFEGRELFATADRSPALWPSERGDRLTLGAL 291

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            R     RR  GLP   + H LRHS+ THLL  G D   +Q  LGH   STT +YT+V+S
Sbjct: 292 GRSFTAFRRLAGLPPELSLHALRHSYTTHLLEAGYDPLFVQQQLGHSYASTTSLYTSVSS 351


>gi|89147612|gb|ABD62665.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 42/64 (65%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +N    Q  ++   R   +  + + HTLRHSFATHLL NG D+R++Q +LGH  +STT I
Sbjct: 99  VNEKNLQNAVKHAVRKARINKAASCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMI 158

Query: 298 YTNV 301
           YT+V
Sbjct: 159 YTHV 162


>gi|89147512|gb|ABD62616.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 41/68 (60%)

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   L+  V Q  + Q  R   +    T HTLRHSFATHLL NG ++R +Q +LGH  + 
Sbjct: 95  RRHHLSEKVMQTALHQAVRESDIAKHVTVHTLRHSFATHLLLNGTNIREVQELLGHKNVE 154

Query: 294 TTQIYTNV 301
           TT IYT+V
Sbjct: 155 TTMIYTHV 162


>gi|89147545|gb|ABD62632.1| integrase [uncultured bacterium]
 gi|89147549|gb|ABD62634.1| integrase [uncultured bacterium]
 gi|89147565|gb|ABD62642.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 41/61 (67%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           G+ Q  +++     G+      H+LRHSFATHLLS G D+R++Q +LGH  +STT IYT+
Sbjct: 102 GILQTALKRAVDAAGIVKRANCHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTH 161

Query: 301 V 301
           V
Sbjct: 162 V 162


>gi|257784003|ref|YP_003179220.1| integrase family protein [Atopobium parvulum DSM 20469]
 gi|257472510|gb|ACV50629.1| integrase family protein [Atopobium parvulum DSM 20469]
          Length = 328

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 120/270 (44%), Gaps = 22/270 (8%)

Query: 41  CDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRAFI----SKRRTQKIGDRSLKRSLSGI 95
           C  R    + +      + I T  RQ++  E+R+++     ++   KI   +++R +S  
Sbjct: 66  CSERTISYYASVLHHYMVNITTGFRQVTTEEVRSYLIEYGQRKGVSKITVDNVRRVIS-- 123

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
            S   +L+      +S +  ++ ++   ++   + + +  T+ D               R
Sbjct: 124 -SLFSWLEAEDYILKSPVRRIKKIRSPRNIKPVITDDELETMRDGCTC----------VR 172

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
           + A++ LL   G+R+ E + L  ++I  +     ++GKGDK R V      +  + EY +
Sbjct: 173 DLALVDLLTSSGMRVGELVRLNREDIDFEGRQCVVRGKGDKERRVYFDARTKVHLHEYLN 232

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
               D N  + + L  G + +    GV  R +R L R LGLP     H  R + AT  + 
Sbjct: 233 -SRHDENPALFISL-DGTKKRLEISGVELR-LRMLGRSLGLP-RVHPHKFRRTMATRAID 288

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            G  +  +Q +LGH ++ TT  Y  V+ +N
Sbjct: 289 KGMPIEQVQVLLGHSKIDTTLCYAMVDQEN 318


>gi|226326689|ref|ZP_03802207.1| hypothetical protein PROPEN_00542 [Proteus penneri ATCC 35198]
 gi|225204910|gb|EEG87264.1| hypothetical protein PROPEN_00542 [Proteus penneri ATCC 35198]
          Length = 237

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 97/198 (48%), Gaps = 15/198 (7%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           ++PE +S  +    + +L+ +++ER LS +T+++Y    RQ +         KIT Q I 
Sbjct: 6   DIPETLSTAI----EQFLRYIQVERRLSPVTVENYH---RQLMALAQMMVAMKIT-QWI- 56

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            L    +R  ++K     +   SL    S ++SFL +   + +   +    +R  K    
Sbjct: 57  SLESQHVRMLLAKSNRSGLQPTSLALRFSALRSFLDWQVAQGMLEVNPAKGIRTPKSGRH 116

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP+ ++  +   L+ N+ L        +  R+  +L ++YG GLR+SE  +L   +I  +
Sbjct: 117 LPKNMDVDEVSQLM-NIDLKDP-----LSVRDRTMLEVMYGAGLRLSELTNLNISDIDMN 170

Query: 185 QSTLRIQGKGDKIRIVPL 202
           +  +R+ GKG K R VPL
Sbjct: 171 EGEVRVLGKGSKERKVPL 188


>gi|88857913|ref|ZP_01132555.1| super-integron integrase IntIA [Pseudoalteromonas tunicata D2]
 gi|88819530|gb|EAR29343.1| super-integron integrase IntIA [Pseudoalteromonas tunicata D2]
          Length = 167

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 40/64 (62%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            Q+ ++   R   +    + HTLRHSFATHLL  G D+R++Q  LGH  + TTQIYT+V 
Sbjct: 93  LQKAVKSASRKAAIGKHVSCHTLRHSFATHLLQAGMDIRTVQEQLGHSDVKTTQIYTHVL 152

Query: 303 SKNG 306
            + G
Sbjct: 153 KQGG 156


>gi|194733804|ref|YP_002112919.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194709306|gb|ACF88529.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
          Length = 159

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 41/66 (62%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 78  TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 137

Query: 302 NSKNGG 307
               G 
Sbjct: 138 LKVGGA 143


>gi|89147514|gb|ABD62617.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 41/64 (64%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           ++  V  + I+   R   +    +AHT RHSFATHLL  G D+R+IQS+LGH  L TT I
Sbjct: 99  VDQSVINKAIKVAVRKAEVSKKVSAHTFRHSFATHLLQRGTDIRTIQSLLGHRDLETTMI 158

Query: 298 YTNV 301
           YT+V
Sbjct: 159 YTHV 162


>gi|89147543|gb|ABD62631.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 41/61 (67%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           G+ Q  +++     G+      H+LRHSFATHLLS G D+R++Q +LGH  +STT IYT+
Sbjct: 102 GILQTALKRAVDAAGIVKRANCHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTH 161

Query: 301 V 301
           V
Sbjct: 162 V 162


>gi|257440124|ref|ZP_05615879.1| integrase/recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
 gi|257197476|gb|EEU95760.1| integrase/recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
          Length = 327

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 119/253 (47%), Gaps = 29/253 (11%)

Query: 61  QTIRQLSYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           + ++Q++  ++R +++    +RR+ K+   +++R LS   SF  +L+      +S +  +
Sbjct: 86  KAVQQITTDDLRRYLTNYQVQRRSSKVTIDNIRRILS---SFFSWLEDEDFIVKSPVRRI 142

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             +K +  +     ++    + DN             AR+ A++ LL   G+R+ E ++L
Sbjct: 143 HKVKTAKVVKDTYTDEALELMRDNC----------TTARDLAMVDLLASSGMRVGELVTL 192

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRG 232
             ++I  ++    + GKG+K R+V      +  +  Y     D  P  L ++++ P  R 
Sbjct: 193 NREDINFNERECVVIGKGNKERLVYFDARTKIHLQNYLEGRTDENPA-LFVSLKAPFDRL 251

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           + G     GV  R +R+L + L +P     H  R + AT  +  G  +  +Q +LGH ++
Sbjct: 252 MIG-----GVETR-LRELGKRLNIP-KVHPHKFRRTLATTAIDKGMPIEQVQQLLGHQKI 304

Query: 293 STTQIYTNVNSKN 305
            TT  Y  V  +N
Sbjct: 305 DTTMHYAMVKQQN 317


>gi|78043985|ref|YP_361456.1| phage integrase family site specific recombinase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996100|gb|ABB14999.1| site-specific recombinase, phage integrase family [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 312

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 126/294 (42%), Gaps = 30/294 (10%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GL+  TL+ Y     +F+              T    +Y  +R  I +  ++    R   
Sbjct: 30  GLAPRTLEDYRWHIEKFMEL------------TGANPTYEAVRKAILQHLSEPSSPRYRN 77

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             L  +K+F  +  +      +    +R  K+  S  R +    ++  V  +L     +T
Sbjct: 78  IKLQYLKAFFNWCVREGYLPANPTDGIRKAKEDISNVRHV----SIEAVKKLLAQPDKKT 133

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI---VPLLPSV 206
            +   R+  ++ +    G R SE L + P ++  D   + ++    K RI   + + P  
Sbjct: 134 -YAGLRDYCLMLVQIDTGARPSELLQIKPDDLNLDAREIYVRADVAKTRIGRTLVISPFT 192

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG-LPLSTTAHTL 265
            +A++ +  + P     + ++PLF    G+ L     QR+ R ++RY     +  T + L
Sbjct: 193 VQALMRFLKIRPS--WWSNEVPLFASENGRQLTA---QRWSRIVKRYCEEAGVKVTPYGL 247

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           RH+FA   L  GGD  S+Q ILGH  L+ T+ Y  ++     D + EI+++  P
Sbjct: 248 RHTFAIEFLKGGGDPFSLQRILGHTDLTMTRRYVRLSQ----DDIKEIHEKASP 297


>gi|254286498|ref|ZP_04961455.1| Int [Vibrio cholerae AM-19226]
 gi|150423447|gb|EDN15391.1| Int [Vibrio cholerae AM-19226]
          Length = 345

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 70/145 (48%), Gaps = 19/145 (13%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I  +    G RISEALSL    I + + T  ++ KG +IR VP+  ++ K I+       
Sbjct: 204 IAKICLATGARISEALSLERSQISEFKLTF-VETKGKRIRSVPISENLYKEIM------- 255

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ-LRRYLGLPLSTTAHTLRHSFATHLLSNG 277
             L  +    +F    G         RYI++ L  Y+  P     H LRH+FATH + N 
Sbjct: 256 --LASSSSTKIFSTTYGSA------HRYIKKALPDYV--PEGQATHVLRHTFATHFMMNR 305

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVN 302
           GD+  +Q ILGH ++  T  Y + +
Sbjct: 306 GDILILQRILGHQKIEQTMAYAHFS 330


>gi|297624037|ref|YP_003705471.1| integrase family protein [Truepera radiovictrix DSM 17093]
 gi|297165217|gb|ADI14928.1| integrase family protein [Truepera radiovictrix DSM 17093]
          Length = 292

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 124/284 (43%), Gaps = 34/284 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFL--AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           GL+  +L+ +E   + F  +L    ++ E  T         T IR ++   ++  +   +
Sbjct: 16  GLTTRSLEWHETSLKSFTRWLEACSHSAEPETWNP------TLIREYVVYLQSSGLSGWT 69

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD-NVLLHTS 146
           +   +  + +F ++L + + T ++    +R  K   +      ++Q  T  +   LL  S
Sbjct: 70  VTNKVQSLLAFTRWLHEEEFTEKNVAERVRKPKPPQT------QRQPFTDAELRRLLKAS 123

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
             +     R++AI+ LL    +R SE  +L   + + DQ  +++ GKG+K R+VP  P  
Sbjct: 124 QSS----IRDAAIVALLLDTAIRASELCTLKLSDCLLDQCLIKVMGKGNKERVVPHSPQT 179

Query: 207 RKAILEY-----YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            K + ++         P+         +F   R +   P    + I ++     +     
Sbjct: 180 GKLVSKWLLKGRASEGPY---------VFHTERSERFTPRSLHKLIERIGNRAAVD-DCY 229

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            H LRHS A  +L NG D  ++Q +LGH  L+ T  Y  +N+ +
Sbjct: 230 PHRLRHSAAITMLRNGMDPLTLQRMLGHTSLNMTMRYVALNTTD 273


>gi|89147586|gb|ABD62652.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 41/61 (67%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           G+ Q  +++     G+      H+LRHSFATHLLS G D+R++Q +LGH  +STT IYT+
Sbjct: 102 GILQTALKRAVDAAGIVKHANCHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTH 161

Query: 301 V 301
           V
Sbjct: 162 V 162


>gi|210612745|ref|ZP_03289460.1| hypothetical protein CLONEX_01662 [Clostridium nexile DSM 1787]
 gi|210151438|gb|EEA82446.1| hypothetical protein CLONEX_01662 [Clostridium nexile DSM 1787]
          Length = 356

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 125/298 (41%), Gaps = 32/298 (10%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAF-------YTEEKITIQTIRQLSYTEIRAFISKRR 79
           +E   S  T  SY  D R F  FL         YT  + T+Q + ++   +I  ++   +
Sbjct: 38  VEPTTSAKTRISYAYDIRVFFHFLIENNPIYHDYTTTQFTLQDLERVEPIDIEEYLEYLK 97

Query: 80  TQKI--------GDRSLKRSLSGIKSFLKYLKKRKITTESN---ILNMRNLKKSNSLPRA 128
             K         G++ L R  S ++SF +Y  + ++  E N    ++M  L     +   
Sbjct: 98  VYKADDNQVITNGEKGLARKFSSLRSFYRYFYRHQMI-EKNPTIFVDMPKLHDKAIIRLD 156

Query: 129 LNEKQAL-TLVDNVLLHTSHETKW----IDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           ++E   L   V+N     + + K        R+ AIL LL G G+R+SE + L   +I  
Sbjct: 157 IDEVALLLDYVENCGKELTGQKKVYYEKTKTRDLAILTLLLGTGIRVSECVGLDINDIDF 216

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPL 238
             + +++  KG    ++     VR A+  Y +       P   + N    LF   + K +
Sbjct: 217 KNNGIKVTRKGGSEMVIYFGEEVRNALENYLETTRASATPLPDHEN---ALFLSTQRKRM 273

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
                +  +++  + +      T H LR ++ T L    GD+  +  +LGH  ++TT+
Sbjct: 274 GVQAIENMVKKYAKQVTPNKKITPHKLRSTYGTSLYKETGDIYLVADVLGHKDVNTTK 331


>gi|153213639|ref|ZP_01948912.1| Int [Vibrio cholerae 1587]
 gi|124115838|gb|EAY34658.1| Int [Vibrio cholerae 1587]
          Length = 345

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 70/145 (48%), Gaps = 19/145 (13%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I  +    G RISEALSL    I + + T  ++ KG +IR VP+  ++ K I+       
Sbjct: 204 IAKICLATGARISEALSLERSQISEFKLTF-VETKGKRIRSVPISENLYKEIM------- 255

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ-LRRYLGLPLSTTAHTLRHSFATHLLSNG 277
             L  +    +F    G         RYI++ L  Y+  P     H LRH+FATH + N 
Sbjct: 256 --LASSSSAKIFSTTYGSA------HRYIKKALPDYV--PEGQATHVLRHTFATHFMMNR 305

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVN 302
           GD+  +Q ILGH ++  T  Y + +
Sbjct: 306 GDILILQRILGHQKIEQTMAYAHFS 330


>gi|94442272|dbj|BAE93635.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           PS  K+ + YY    F  N     P    ++   ++    Q+ I++      +     +H
Sbjct: 67  PSAAKSWMWYY---AFPSNQRCFAPDLGTMKRHHVHQTSVQKAIKRAVTRCNINKRVGSH 123

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 124 AFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|89147532|gb|ABD62626.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 41/61 (67%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           G+ Q  +++     G+      H+LRHSFATHLLS G D+R++Q +LGH  +STT IYT+
Sbjct: 102 GILQTALKRAVDAAGIVKRANCHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTH 161

Query: 301 V 301
           V
Sbjct: 162 V 162


>gi|89147626|gb|ABD62672.1| integrase [uncultured bacterium]
          Length = 162

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 36/50 (72%)

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R  G+  + T HT RHSFATHLL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 112 RVSGIGKAATCHTFRHSFATHLLERGQDIRTVQELLGHKDVSTTMIYTHV 161


>gi|333011635|gb|EGK31048.1| tyrosine recombinase xerD domain protein [Shigella flexneri K-227]
 gi|333011749|gb|EGK31158.1| tyrosine recombinase xerD domain protein [Shigella flexneri K-227]
          Length = 91

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V 
Sbjct: 11  FQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV- 69

Query: 303 SKNGGDWMMEIYDQTHPSITQK 324
            K GG  +    D   P  +++
Sbjct: 70  LKVGGAGVRSPLDALPPLTSER 91


>gi|327403680|ref|YP_004344518.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327319188|gb|AEA43680.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 413

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 16/162 (9%)

Query: 162 LLYGC--GLRISEALSLTPQNIMD----DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
            L+ C  GL  ++   L   +I      ++  +  + K D +  +P+LP V + I +Y D
Sbjct: 249 FLFSCFTGLAYADVKELKKSDIQKVISAEKWIMTKRKKTDTVCNIPVLPPVEELIQKYKD 308

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
             P   N +  LP+   I  + +N      Y++++    G+    T H  RH+FAT + L
Sbjct: 309 D-PRCENADCLLPV---ISNQKMNS-----YLKEIADVCGIQKELTFHIARHTFATTVTL 359

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +NG  + S+  +LGH  L TTQ Y  +  K  GD M  ++++
Sbjct: 360 TNGVSIESVSKMLGHTNLKTTQHYAKILDKKIGDDMRSLHEK 401


>gi|228967125|ref|ZP_04128161.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228792494|gb|EEM40060.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 141

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 69/132 (52%), Gaps = 9/132 (6%)

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--LL 143
           ++L R ++ I+SF ++L + +       +++   +    LP+ L+       VD V  LL
Sbjct: 12  KTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLS-------VDEVEALL 64

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
            T   T     R+ A+L LLY  GLR+SE ++L  +++      +R  GKG+K RI+PL 
Sbjct: 65  QTPKMTSAFGIRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLG 124

Query: 204 PSVRKAILEYYD 215
               +AI +Y +
Sbjct: 125 SLATEAIQKYIE 136


>gi|295401430|ref|ZP_06811400.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|294976480|gb|EFG52088.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
          Length = 304

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 132/288 (45%), Gaps = 29/288 (10%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           E+G S+ T+ SY  D   F   L  + ++ +T   IR+     I+  ++    + +   +
Sbjct: 11  EKGASQNTIISYTNDLNMFFHDLHIHPDDYVTPADIRKW----IQHMLNPAEGKPLAIST 66

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA---LNEKQALTLVDNVLLH 144
           + R L+ ++SF  +  +R    ++ + ++++LK ++        L E++   L+   +  
Sbjct: 67  INRRLNSLRSFYAWAVERHYIEQNPMKDIQDLKTADEDYEKIMWLTEEEFEDLLQR-MRK 125

Query: 145 TSHETKWIDA-----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
               ++ +D      R+ A++YLL   GLR+ E  +L   ++  +   +RI GKG K+R 
Sbjct: 126 KPVRSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMKRIRIVGKGMKVRT 185

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-------LFRGIRGKPLNPGVFQRYIRQLRR 252
           VP + ++  A LE  D   F   +  + P       +F   R     P    R I+++  
Sbjct: 186 VP-ISNILLAELE--DWLKFRAEMAKKKPHVAVSPYVFYSQRS----PKFSVRGIQRMIE 238

Query: 253 YLGLP-LSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLSTTQIY 298
              LP    T H  RH+F   +L +   D+  ++ + GH  ++TT  Y
Sbjct: 239 SYSLPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRY 286


>gi|89147681|gb|ABD62699.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 43/69 (62%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R   L+  V QR ++      G+    + HT RHSFATHLL +G D+R+IQ +LGH  +
Sbjct: 94  LRRHHLHETVLQRAVKSAVLAAGVTKLASCHTFRHSFATHLLESGYDIRTIQKLLGHRDV 153

Query: 293 STTQIYTNV 301
            TT IYT+V
Sbjct: 154 RTTMIYTHV 162


>gi|323138766|ref|ZP_08073831.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322396013|gb|EFX98549.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 409

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 125/307 (40%), Gaps = 36/307 (11%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
            +P +    ++ E   W +    ++GL++ TL +Y       + F+A   E+        
Sbjct: 113 RVPVLPGPPIVGEYMVWARE---QQGLAETTLATY---ASAIIPFVAALGEDPAAYDAAA 166

Query: 65  QLSYTEIRA-FISKRRTQKIGDRSLKRSLSGIKSFLKYL--KKRKITTESNILNMRNLKK 121
              Y   RA  +S  R   IG          I++FL++L    R        +      +
Sbjct: 167 IRGYMLGRAGAVSVARLNGIG--------VAIRAFLRFLIAMGRCPPGRDRAMPQAAEWR 218

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
             S+PR L E      +  ++     E +    R+ AI+ LL   G+R SE   L   +I
Sbjct: 219 LASIPRFLPEDD----IARIIAACESERR---LRDRAIILLLVRLGMRASEVARLGFDDI 271

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGK 236
              Q ++R+ GKG +  ++PL   V  A++ Y +          L L    PL      +
Sbjct: 272 DWRQGSIRLHGKGRREELLPLSQEVGDALIAYIECARPAFAARALFLTESAPL------R 325

Query: 237 PLNPGVFQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           P++ G  +  +R+     G+      AH LRHS AT +L +G  L  +  +L H   + T
Sbjct: 326 PIDRGTIKCVVRRALERAGVESRFKGAHVLRHSAATSMLRHGVSLAGVSIVLRHRSPAMT 385

Query: 296 QIYTNVN 302
             Y  V+
Sbjct: 386 VHYAKVD 392


>gi|223369864|gb|ACM88800.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|94442270|dbj|BAE93634.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 42/69 (60%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           IR   L+    Q+ +++  R  G+      HTLRH FATHLL    D+R++Q +LGH  +
Sbjct: 93  IRRHHLHESTLQKSVKKAARGCGINKRVGCHTLRHCFATHLLEANHDIRTVQELLGHAHV 152

Query: 293 STTQIYTNV 301
           STT IYT+V
Sbjct: 153 STTMIYTHV 161


>gi|113867686|ref|YP_726175.1| phage integrase family protein [Ralstonia eutropha H16]
 gi|113526462|emb|CAJ92807.1| phage integrase family protein [Ralstonia eutropha H16]
          Length = 566

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 124/303 (40%), Gaps = 40/303 (13%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +E ER LS LT +    D   +  F+      +  +   R  +  + R F     T  + 
Sbjct: 256 VERERPLSSLTTE----DATAYRSFVRRPAPRERWVGPARPRTSPDWRPF-----TGSLS 306

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            RS   +LS + +  ++L +++    +    ++      S+  AL+   A T  + +L+ 
Sbjct: 307 ARSTAHALSVLGAMFRWLIQQRYVLANPFAGIKVRGGGRSV--ALDSSHAFTEGEWLLIR 364

Query: 145 TSHET-----KWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDDQST---LRIQGK 193
           T  +       W       + ++L   Y  GLR SE +  T  ++  D      L++ GK
Sbjct: 365 TIADGLEWSYGWDGPAAQRLRFVLDFGYATGLRASELVGATLGDVESDPHGDHWLKLVGK 424

Query: 194 GDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNP-------GVF 243
           G K   V L P  R A+  Y     L       +   PL  G+   P +        GV 
Sbjct: 425 GAKAGKVALPPLARLALDSYLVERGLPVTPARWDPHTPLIGGLGQDPASGITGTRLWGVL 484

Query: 244 QRYIRQLRRYLGLPLSTTA--------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           +R+ RQ+   +     + A        H +RH+ ATH L+ G +L +++  L H  +STT
Sbjct: 485 RRFFRQVADLIQADHPSAADKLRQASPHWMRHTHATHALARGAELTTVRDNLRHASISTT 544

Query: 296 QIY 298
            IY
Sbjct: 545 SIY 547


>gi|89147349|gb|ABD62535.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 39/60 (65%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             Q+ ++   R  G+    + HTLRHSFAT LL NG D+R+IQ +LGH  L TT IYT+V
Sbjct: 103 ALQKAVKSAIRRAGINKPGSCHTLRHSFATRLLENGYDVRTIQELLGHADLQTTMIYTHV 162


>gi|94442258|dbj|BAE93628.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 42/69 (60%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           IR   L+    Q+ +++  R  G+      HTLRH FATHLL    D+R++Q +LGH  +
Sbjct: 93  IRRHHLHESTLQKSVKKAARGCGINKRVGCHTLRHCFATHLLEANHDIRTVQELLGHAHV 152

Query: 293 STTQIYTNV 301
           STT IYT+V
Sbjct: 153 STTMIYTHV 161


>gi|38234408|ref|NP_940175.1| putative phage integrase [Corynebacterium diphtheriae NCTC 13129]
 gi|38200671|emb|CAE50367.1| Putative phage integrase [Corynebacterium diphtheriae]
          Length = 271

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 96/221 (43%), Gaps = 30/221 (13%)

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
           G  + K + + ++ F  +  +  +   +  + +  + +  S+PR   +     L+ + + 
Sbjct: 63  GPAARKSARTSVRVFFAWAVREGLIETNPAITIIPVPQVRSVPRPCPD----ALISDAM- 117

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVP 201
                 K    R    + ++  CGLR  E   +   ++  +     LR++GKG   R++P
Sbjct: 118 ------KVAAPRVRLAIEIMATCGLRRDECARVRAGDVEPVGQGWILRVRGKGGHERLIP 171

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
             P + + I               Q  +F G     ++ G   + I +      LP + T
Sbjct: 172 CPPHLARRIAA------------AQGWVFPGGANGHVSAGWLGKLISR-----ALPGAWT 214

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            H +RH +AT    +  DLR++Q +LGH  ++TTQIYT V+
Sbjct: 215 PHKIRHRYATVAYGDTYDLRAVQELLGHASVATTQIYTAVS 255


>gi|238924762|ref|YP_002938278.1| site-specific recombinase, phage integrase family [Eubacterium
           rectale ATCC 33656]
 gi|238876437|gb|ACR76144.1| site-specific recombinase, phage integrase family [Eubacterium
           rectale ATCC 33656]
          Length = 336

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 110/249 (44%), Gaps = 23/249 (9%)

Query: 62  TIRQLSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           ++R+++  EIR ++S  ++     + ++      I SF  +L++     +S +  +  +K
Sbjct: 96  SVRKITTEEIREYLSDYQKLNNCSNVTIDNVRRNISSFFSWLEEEDYILKSPMRRIHKIK 155

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               +   ++++    L DN            + R+ AI+ LLY  G+R+ E ++L   +
Sbjct: 156 TKTVVKSVISDEGIEKLRDNCN----------EKRDLAIIDLLYSTGIRVGELVNLNIDD 205

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN- 239
           I  +     + GKGDK R V      +  + +Y D    D N  + + L       P + 
Sbjct: 206 IDLEGRECIVYGKGDKERRVYFDAKAKVHLKDYID-TRTDKNKALFVTL-----DAPHDR 259

Query: 240 ---PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
               GV  R +R+L R L L      H  R S AT  +  G  +  +Q ILGH ++ TT 
Sbjct: 260 LKISGVEIR-LRKLGRKLSLE-RVHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTM 317

Query: 297 IYTNVNSKN 305
            Y  VN  N
Sbjct: 318 QYAMVNQNN 326


>gi|89147442|gb|ABD62581.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 43/69 (62%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R   ++    Q+ I+   R   +  + + HTLRHSFATHLL  G D+R+IQ +LGH  +
Sbjct: 94  VRRHHIHQNTLQKQIKTAARKSTIVKNVSVHTLRHSFATHLLEKGYDIRTIQELLGHANV 153

Query: 293 STTQIYTNV 301
            TT IYT+V
Sbjct: 154 QTTMIYTHV 162


>gi|325288245|ref|YP_004264426.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324963646|gb|ADY54425.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 341

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 129/301 (42%), Gaps = 19/301 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR--QLSYTEIRAFI 75
           R   L+ L  +R  S+ T++SY      F+++L   TE++++++ IR   ++   I  F+
Sbjct: 9   RSFLLEYLPNQRCFSENTVRSYRQALNLFILYLR--TEQRMSVKQIRFDAMNREMILNFL 66

Query: 76  SKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
                 +  G  +  + L  ++SF  Y  +   T  +  + ++N+       + +     
Sbjct: 67  DWLENDRHCGVNTRNQRLMVLRSFFNYAGELDCTQIALSVTVQNIPIKTPQSKVVEYLSE 126

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQG 192
             L   VLL   + TK    RN   + L+Y    R  E L +  ++  +        + G
Sbjct: 127 TAL--EVLLKQPYPTKRTGLRNLFFMVLMYDTAARCGELLDMKVRDLRVKVQHPIAYLHG 184

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF----RGIRGKPLNPGVFQRYIR 248
           KG+K R VPLL    +    Y      +   + + PLF     GI+ +P++      +++
Sbjct: 185 KGNKTRTVPLLTGTVQHCERYLRTFHTNEPADSEKPLFYTVIHGIQ-QPMSADTVALFLK 243

Query: 249 Q-----LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +      R    +P    AH LRH+ A HL   G  +  +   LGH    TT++Y   ++
Sbjct: 244 KYGDLACRACPEVPPHIHAHMLRHTRAMHLYHQGMPMMLLSEYLGHASEETTKVYAYADT 303

Query: 304 K 304
           +
Sbjct: 304 E 304


>gi|223369830|gb|ACM88784.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|126660459|ref|ZP_01731568.1| Tn554, transposase A [Cyanothece sp. CCY0110]
 gi|126618272|gb|EAZ89032.1| Tn554, transposase A [Cyanothece sp. CCY0110]
          Length = 368

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 99/224 (44%), Gaps = 48/224 (21%)

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
           KSFL ++ K K   ++ +L +   K+  + P  L  +Q  TLV+             + R
Sbjct: 141 KSFLHHISKGK-EVKTRLLKV---KEPKTFPGCLTPEQVNTLVEAC----------CNLR 186

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS---------- 205
           +  ++ LLY  GLRI E L L  +++        + G  ++I+++P + +          
Sbjct: 187 DKFLIRLLYESGLRIGEGLGLRHEDM--------VTGNNNQIKVIPRVHNINYVRAKAGV 238

Query: 206 -----VRKAILEYY-----DLCPFDLNLNIQLPLFR----GIRGKPLNPGVFQRYIRQLR 251
                V K ++++Y     D  P D++ +    + +    G  G PLN        R+L 
Sbjct: 239 ERTVHVNKELMQWYSAYLIDEYPEDIDCDFVFIVIKAPGKGKIGNPLNYKTVDSLFRRLS 298

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           +     +  T H LRH+ AT L+  G D+  +Q  LGH  + TT
Sbjct: 299 K--KTRIEVTPHLLRHTHATELIRAGWDMSYVQKRLGHADIQTT 340


>gi|91780851|ref|YP_556058.1| putative phage integrase [Burkholderia xenovorans LB400]
 gi|91693511|gb|ABE36708.1| Putative phage integrase [Burkholderia xenovorans LB400]
          Length = 266

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 97/210 (46%), Gaps = 28/210 (13%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           SL  +++G+K F      R       I+ M+ ++    LP  L+  +   L++    +  
Sbjct: 71  SLNHAITGLKFFFTVTLDRP----ELIVRMQPVRVPRILPVVLSPDEVRRLIEAAG-NLK 125

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205
           H+T          L + YG GLR SE ++L   ++  ++ TLRI QGKG + R   L P 
Sbjct: 126 HQTA---------LSVAYGAGLRASEVVALKVTDVDSERMTLRIEQGKGRRDRYAMLSPV 176

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS------ 259
           + + +  ++ +      +     LF G+   PL+    Q   RQL R +           
Sbjct: 177 LLERLRVWWRMARAQGKMFDGGWLFPGL--DPLD----QLSTRQLNRAIHAAAEAAHIDK 230

Query: 260 -TTAHTLRHSFATHLLSNGGDLRSIQSILG 288
             + HTLRHSFATHLL    D+R IQ +LG
Sbjct: 231 RVSMHTLRHSFATHLLEQKVDIRVIQVLLG 260


>gi|17975106|ref|NP_536628.1| Int [Vibrio phage K139]
 gi|153820858|ref|ZP_01973525.1| Int [Vibrio cholerae B33]
 gi|165970235|ref|YP_001650866.1| putative integrase [Vibrio phage kappa]
 gi|229512070|ref|ZP_04401549.1| integrase [Vibrio cholerae B33]
 gi|229519206|ref|ZP_04408649.1| integrase [Vibrio cholerae RC9]
 gi|229607239|ref|YP_002877887.1| integrase [Vibrio cholerae MJ-1236]
 gi|254849315|ref|ZP_05238665.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|4530503|gb|AAD22068.1| Int [Vibrio phage K139]
 gi|126521650|gb|EAZ78873.1| Int [Vibrio cholerae B33]
 gi|165292212|dbj|BAF98794.1| putative integrase [Vibrio phage kappa]
 gi|229343895|gb|EEO08870.1| integrase [Vibrio cholerae RC9]
 gi|229352035|gb|EEO16976.1| integrase [Vibrio cholerae B33]
 gi|229369894|gb|ACQ60317.1| integrase [Vibrio cholerae MJ-1236]
 gi|254845020|gb|EET23434.1| conserved hypothetical protein [Vibrio cholerae MO10]
          Length = 345

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 70/145 (48%), Gaps = 19/145 (13%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I  +    G RISEALSL    I + + T  ++ KG +IR VP+  ++ K I+       
Sbjct: 204 IAKICLATGARISEALSLERSQISEFKLTF-VETKGKRIRSVPISENLYKEIM------- 255

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ-LRRYLGLPLSTTAHTLRHSFATHLLSNG 277
             L  +    +F    G         RYI++ L  Y+  P     H LRH+FATH + N 
Sbjct: 256 --LASSSSTKIFSTTYGSA------HRYIKKALPDYV--PEGQATHVLRHTFATHFMMNR 305

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVN 302
           GD+  +Q ILGH ++  T  Y + +
Sbjct: 306 GDILILQRILGHQKIEQTMAYAHFS 330


>gi|323973807|gb|EGB68981.1| phage integrase [Escherichia coli TA007]
          Length = 336

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 104/242 (42%), Gaps = 41/242 (16%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLK 120
           Q++ + I  + ++RR + I   ++ R L  +      L       ES + N     R  K
Sbjct: 100 QITKSLITQYCAQRRGEGIKPTTINRDLITLGGMFTTL------IESELYNGEHPFRGFK 153

Query: 121 KSNSLPRALNEKQALTL--VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           K   L     E   LTL  +D +L   S +       N  I  L    G R  EA  L  
Sbjct: 154 K---LKEQTAETGYLTLEEIDALLAALSGD-------NRKIAVLCLSTGARWGEAARLKA 203

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           +N++ ++ +  ++ K +  R VP+   V   ++                   RG      
Sbjct: 204 ENVIHNRVSF-VKTKTNTPRTVPISDDVAAYVVGKT----------------RGFLFPEA 246

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +   F+R +++++    LP     H LRHSFATH + NGG++ ++Q ILGH +++ T +Y
Sbjct: 247 SYADFRRTLKEVKP--DLPAGQATHALRHSFATHFMINGGNIITLQRILGHTKIAQTMVY 304

Query: 299 TN 300
            +
Sbjct: 305 AH 306


>gi|223369862|gb|ACM88799.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|89147390|gb|ABD62555.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|22096306|gb|AAM92159.1| TnpA-like protein [Staphylococcus aureus]
          Length = 361

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 100/216 (46%), Gaps = 36/216 (16%)

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
           K FL ++ K K   + N+L +R  KK   + R LN  +   +V+    HT         R
Sbjct: 141 KGFLHHVSKGK-PYKRNVLKLREKKK---MIRTLNHSEVKEIVEAC--HT--------LR 186

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIM--DDQSTL-----RIQGKGDKIRIVPLLPSVRK 208
           +  I+ L+Y  G+RI E LSL   +I+  D+Q  +      + G   K+R   ++  V K
Sbjct: 187 DKLIIMLMYEGGMRIGEVLSLRLADIVTWDNQVHITPREESLNGAYIKLRKERVI-HVSK 245

Query: 209 AIL---------EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
            ++         EYYD    D    + + L     G+PL        +R+L +  G+   
Sbjct: 246 ELMALYTDYLVHEYYDELEHDY---VFIALKESHFGQPLKYQSVLDLVRRLNKRTGIVF- 301

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            T HTLRH+ AT L+ NG D   +Q  LGH ++ TT
Sbjct: 302 -TPHTLRHTHATELIRNGWDAAYVQKRLGHAQVQTT 336


>gi|317481410|ref|ZP_07940477.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902395|gb|EFV24282.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 410

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 129/293 (44%), Gaps = 37/293 (12%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L  + + RG  K TL+ Y      FL +L     + I +Q I+Q++   +  F+S ++  
Sbjct: 115 LHLISLRRG--KNTLKHYRSCLGNFLYYL-----DMIGVQNIKQITEEHVIRFLSSQQLN 167

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVD 139
           +      +++LS I+    + ++  I             L+K   +P     ++ + +++
Sbjct: 168 R------EKTLSIIRCLFLFWRQENIIDGRFEEFFATYKLRKKERIPSYYTTEE-IKVIE 220

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKI 197
           N +  +S   K    RN A++ L    GLR S+ +SL   +I   +D   LRIQ  G  I
Sbjct: 221 NSVSRSSALGK----RNYAMILLASRLGLRASDIMSLKFSDIDWDNDLIRLRIQKTGKTI 276

Query: 198 RIVPLLPSVRKAILEYYDLC-PFDLNLNIQL----PLFRGIRGKPLNPGVFQRYIRQLRR 252
            + PLL  V  AI++Y     P   + NI L    P     +            I ++ R
Sbjct: 277 EL-PLLADVGNAIIDYLRYGRPASTSQNIFLSSRAPYIAATQSMVCGN------INKIIR 329

Query: 253 YLGLPLSTT---AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             G+ +       H+LRHS A+++L NG  +  I  +LGH    TT  Y  +N
Sbjct: 330 LSGVNIDKKRHGPHSLRHSLASNMLENGATMPIISEVLGHRNTETTMTYLKIN 382


>gi|153810222|ref|ZP_01962890.1| hypothetical protein RUMOBE_00603 [Ruminococcus obeum ATCC 29174]
 gi|153811732|ref|ZP_01964400.1| hypothetical protein RUMOBE_02125 [Ruminococcus obeum ATCC 29174]
 gi|153811869|ref|ZP_01964537.1| hypothetical protein RUMOBE_02262 [Ruminococcus obeum ATCC 29174]
 gi|149832003|gb|EDM87088.1| hypothetical protein RUMOBE_02262 [Ruminococcus obeum ATCC 29174]
 gi|149832135|gb|EDM87220.1| hypothetical protein RUMOBE_02125 [Ruminococcus obeum ATCC 29174]
 gi|149833401|gb|EDM88482.1| hypothetical protein RUMOBE_00603 [Ruminococcus obeum ATCC 29174]
          Length = 345

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 106/221 (47%), Gaps = 23/221 (10%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL---LHTSHE 148
           ++ I+++L Y     I+ +S  L +  +    ++     +K+   L D+ L   L     
Sbjct: 93  VAAIRAYLNYASDMDISVQSVALAISQISPCKTI-----KKEKPILSDDALAAILSAPPN 147

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSV 206
           TK+   R+ AIL LLY   +RISE L++   +I  +     + I GKG+K R + L    
Sbjct: 148 TKF-GVRDRAILILLYDTAVRISELLNIRLCDIAMESKYPNIFITGKGNKERTIQLTAKA 206

Query: 207 RKAILEYYDLCPFDLNLNIQLPLF----RGIRGKPLNPGVFQRYIRQL-----RRYLGLP 257
            + + EY  +  +  N + +  LF    +G+  + ++ G  QR I++       + + LP
Sbjct: 207 VEHLREYIRV--YHSNSSKEAYLFSTTIKGVTDR-MSVGNVQRIIKKYAALVSEKGVSLP 263

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            S   H  R + AT+L  +G  +  + ++LGH R  TT+ Y
Sbjct: 264 DSVHCHMFRRTRATNLYQDGIAIELVSTVLGHARTDTTKSY 304


>gi|89147520|gb|ABD62620.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 42/69 (60%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R   L+    QR ++       +    T H LRHSFATHLL NG D+R++Q +LGH  +
Sbjct: 94  VRRHHLDKVTVQRKVKAAAERARIGKVVTPHVLRHSFATHLLENGYDIRTVQELLGHKDV 153

Query: 293 STTQIYTNV 301
           STT IYT+V
Sbjct: 154 STTMIYTHV 162


>gi|134045801|ref|YP_001097287.1| phage integrase family protein [Methanococcus maripaludis C5]
 gi|132663426|gb|ABO35072.1| phage integrase family protein [Methanococcus maripaludis C5]
          Length = 287

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 120/284 (42%), Gaps = 25/284 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           LE    LSK +L+ Y+     F+    ++ +E  + + +       +   I   R+  + 
Sbjct: 13  LEFHTSLSKDSLKYYKAGLNAFM---KYFPDENKSWENL------TVEDAIFFYRSYNVS 63

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLVDNVLL 143
             +  R L+ +  F  +  K+K   E+ I       +     RA L EKQ   L+ NV  
Sbjct: 64  KNTKIRRLNDVNRFYNWAMKQKYLVENPIETFVTTLRPEKKERAYLTEKQFKILLSNVKD 123

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPL 202
              +         +  L+LL   G+RISE ++L  + +  +   + I  GKG K R V  
Sbjct: 124 FNYY---------TYTLFLL-KTGVRISEFVNLKVKQVDFENGIIFIHAGKGAKDRYV-F 172

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL--GLPLST 260
           +     + LEYY       NL+     F    G+ L      +Y   L   +   +    
Sbjct: 173 MDVELASRLEYYLEMRILTNLSCN-NFFVNKHGRKLAEDQITKYTDYLNEVMDGSISFRI 231

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           T H LRH+FAT +L  G DL+S+  ILGH  + TT  Y + N +
Sbjct: 232 TPHILRHTFATAMLEKGMDLKSLSLILGHEDIKTTSQYLHKNKE 275


>gi|254513557|ref|ZP_05125621.1| tyrosine recombinase [Rhodobacteraceae bacterium KLH11]
 gi|221532066|gb|EEE35063.1| tyrosine recombinase [Rhodobacteraceae bacterium KLH11]
          Length = 167

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 7/132 (5%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEY-YDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           +GKG   R+VP+         +Y +++ P FDL  +     F    G+   P    + +R
Sbjct: 17  EGKGKVDRMVPIGERALLWCEKYLHEVRPQFDLTGH-DPAFFLTSFGEAFTPNRMTQLVR 75

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                  +  S + H  RHS AT +L NG D+R IQ +LGH +L TTQIYT V+ +    
Sbjct: 76  GHINAAEIGKSGSCHLFRHSCATLMLENGADIRYIQQLLGHAKLDTTQIYTQVSIRQ--- 132

Query: 309 WMMEIYDQTHPS 320
            + +I+  THP+
Sbjct: 133 -LKQIHTLTHPA 143


>gi|239828723|ref|YP_002951346.1| integrase family protein [Geobacillus sp. WCH70]
 gi|239809016|gb|ACS26080.1| integrase family protein [Geobacillus sp. WCH70]
          Length = 304

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 138/302 (45%), Gaps = 33/302 (10%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +L E + +LQ    E+G S  T+ SY  D  QFL  L     + +T   IR+     I+ 
Sbjct: 1   MLHEYETYLQ----EKGFSPNTVISYLNDVNQFLKDLHLRPGDYVTSADIRKW----IQQ 52

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS---NSLPRALN 130
            ++    + +   ++ R L+ ++SF  +        ++ + ++++LK +   N     L 
Sbjct: 53  MLNPVEGKPLAISTINRRLNSLRSFYAWAVAHHKLEQNPMRDIQDLKSADEENEKIMWLT 112

Query: 131 EKQALTLVDNVLLHTSHETKWIDA-----RNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           E++   L+   +     +++ +D      R+ A++YLL   GLR+ E  +L   ++  + 
Sbjct: 113 EEEFEDLLQR-MRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEM 171

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-------LFRGIRGKPL 238
             +RI GKG K+R VP + ++  A LE  D   F   +  + P       +F   R    
Sbjct: 172 RRIRIVGKGMKVRTVP-ISNILLAELE--DWLAFRAQMAKKKPHVATSPYVFYSQR---- 224

Query: 239 NPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLSTTQ 296
           +P    R I+++     LP    T H  RH+F   +L +   D+  ++ + GH  ++TT 
Sbjct: 225 SPKFSVRGIQRMIESYSLPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTS 284

Query: 297 IY 298
            Y
Sbjct: 285 RY 286


>gi|89147634|gb|ABD62676.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 40/59 (67%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            QR ++   R  G+    + H+LRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 104 LQRALKDALRLAGIAKPASCHSLRHSFATQLLESGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|254498068|ref|ZP_05110827.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
 gi|254352704|gb|EET11480.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
          Length = 194

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 69/152 (45%), Gaps = 10/152 (6%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-------RIQGKGDKIRIVPLLPSVR 207
           RN A++Y  +G GLR  E  SLT +++ D Q  L       R    G K     L  + +
Sbjct: 30  RNIALVYCSFGLGLRAKEIASLTIKDVADKQYRLLDEICLKRSMHWGKKQHYAYL--TNK 87

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           K      D     +   +  PLF+  R K   P   Q++ R L    G+ +  ++H+ R 
Sbjct: 88  KVYAALTDHLKTIVGSELNKPLFQTQRKKEFTPCTLQKWFRSLYDKAGI-IGASSHSGRR 146

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           +F T LL  G  ++++ S+ GH    TT IY 
Sbjct: 147 TFITRLLEQGVSIKAVSSLAGHANTITTAIYA 178


>gi|75761085|ref|ZP_00741082.1| Integrase/recombinase (XerC/CodV family) [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228902689|ref|ZP_04066836.1| Integrase/recombinase (XerC/CodV family) [Bacillus thuringiensis
           IBL 4222]
 gi|74491427|gb|EAO54646.1| Integrase/recombinase (XerC/CodV family) [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228856876|gb|EEN01389.1| Integrase/recombinase (XerC/CodV family) [Bacillus thuringiensis
           IBL 4222]
          Length = 323

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 141/309 (45%), Gaps = 51/309 (16%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS-- 76
           +N+L + +  + LS+ T++SY+    Q L     Y E ++ I  + ++    IR +I   
Sbjct: 9   ENFLLHCD-AKHLSRKTIRSYD----QTLKLFTSYLERELKITDVDKVKPLHIRTYIKYL 63

Query: 77  --------------------KRRT---QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI 113
                                RRT   + I + ++   L  IK F  +L+  +   ++ I
Sbjct: 64  RERGKYTFTSNTASEQINYPTRRTDYGKTISETTIANYLRNIKVFFNFLEAEEDIAKNPI 123

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRIS 171
            N+ ++K     P+   +++ L  VD +  +L++   + +   R+  ++ L+   G+R  
Sbjct: 124 SNIESIK-----PQ--RKQKILLSVDEIKKVLYSIDISTFHGFRSYVMIKLILDTGIRAG 176

Query: 172 EALSLTPQNI-MDDQSTLRIQGKGDKIRIV---PLLPSVRKAILEYYDLCPFDLNLNIQL 227
           E  S+  +++ + ++S L    K  K R V    ++ +  K  L+Y D        +   
Sbjct: 177 ECCSMQAEDLDIKNKSILITNPKNKKQRYVYFSNIMANDLKRWLKYRD------RFSDAE 230

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
            LF  IRG  LN   F+  IR + + +G+    T H LR++FA + + NGGD  S+  +L
Sbjct: 231 YLFPTIRGTMLNVNNFEASIRSIGKKVGVHF--TPHQLRNNFAKYYILNGGDWFSLSRVL 288

Query: 288 GHFRLSTTQ 296
           GH  +  TQ
Sbjct: 289 GHSSVEVTQ 297


>gi|89147614|gb|ABD62666.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 40/58 (68%)

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           QR ++   R  G+  + + H+ RHSFATHLL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 105 QRAVKDALRKAGVQKNGSCHSFRHSFATHLLEDGYDIRTVQELLGHKDVRTTMIYTHV 162


>gi|89147347|gb|ABD62534.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 40/60 (66%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 103 TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 162


>gi|154000908|gb|ABS57022.1| integrase [uncultured bacterium]
 gi|154000918|gb|ABS57027.1| integrase [uncultured bacterium]
 gi|188526759|gb|ACD62261.1| IntI1 integrase [uncultured bacterium]
 gi|188526784|gb|ACD62273.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 40/60 (66%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 99  TFQRAFKRAVEEAGVAKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|223369860|gb|ACM88798.1| integrase [uncultured bacterium]
          Length = 163

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|188526792|gb|ACD62277.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 40/59 (67%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 100 FQRAFKRAVEEAGVAKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|188526773|gb|ACD62268.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 40/60 (66%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 99  TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|154000967|gb|ABS57051.1| integrase [uncultured bacterium]
          Length = 158

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 40/60 (66%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 99  TFQRVFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|308234991|ref|ZP_07665728.1| phage family integrase/recombinase protein [Gardnerella vaginalis
           ATCC 14018]
 gi|311113898|ref|YP_003985119.1| phage integrase [Gardnerella vaginalis ATCC 14019]
 gi|310945392|gb|ADP38096.1| phage integrase [Gardnerella vaginalis ATCC 14019]
          Length = 277

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 93/215 (43%), Gaps = 34/215 (15%)

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE---KQALTLVDNVLLHTSHET 149
           S I+SF  Y+ + +I   +  + +  ++K  ++P    +   + AL  V           
Sbjct: 79  STIRSFYSYMIEEEIIDVNPTVKLPKIRKEYAIPHPCPDYIIRGALARVRG--------- 129

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVR 207
              +    A+L L   CGLR SE   ++  +IM  +    L + GKG K R VP+ P + 
Sbjct: 130 ---NKEYEAMLRLGAECGLRRSEIAQVSSSDIMMLNTHPQLLVHGKGRKERTVPIAPDLA 186

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + I             N    +F G     +       +I QL   LG   ST  H+LRH
Sbjct: 187 QIIA------------NKHGYMFPGRWTGHVEASYIAHHISQL---LGNGYST--HSLRH 229

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +AT+   +  DL  +  +LGH  + TTQIY ++ 
Sbjct: 230 RYATNAYESTHDLLLVSKLLGHASVETTQIYISLT 264


>gi|215407992|emb|CAS02323.1| integron integrase [uncultured bacterium]
 gi|215407996|emb|CAS02325.1| integron integrase [uncultured bacterium]
 gi|215407998|emb|CAS02326.1| integron integrase [uncultured bacterium]
 gi|215408002|emb|CAS02328.1| integron integrase [uncultured bacterium]
 gi|215408010|emb|CAS02332.1| integron integrase [uncultured bacterium]
 gi|215408020|emb|CAS02337.1| integron integrase [uncultured bacterium]
 gi|215408022|emb|CAS02338.1| integron integrase [uncultured bacterium]
 gi|215408026|emb|CAS02340.1| integron integrase [uncultured bacterium]
          Length = 158

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 40/60 (66%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 99  TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|188526775|gb|ACD62269.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 40/60 (66%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 99  TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|229106636|ref|ZP_04236877.1| Integrase-recombinase [Bacillus cereus Rock3-28]
 gi|228676818|gb|EEL31423.1| Integrase-recombinase [Bacillus cereus Rock3-28]
          Length = 390

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 10/153 (6%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           N  IL  L   G RI E  +   +++  D +  L++ GKGDK+R + +   + + I E  
Sbjct: 218 NYTILLALASTGARIQELCTARVKDLHYDGKYWLKVTGKGDKVRELFISEHLFQCISEMR 277

Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266
               F   L+   + PLF   RG   NP      ++ + +   L          TAHT R
Sbjct: 278 RRRGFQTILDRGDECPLFVNQRGNFYNPKTLSNQVKDMIKKTNLDFLKYRENPVTAHTFR 337

Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
           H+FA   +  G  DL  +   LGH  + TT+IY
Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370


>gi|237717514|ref|ZP_04547995.1| phage integrase [Bacteroides sp. 2_2_4]
 gi|229453183|gb|EEO58974.1| phage integrase [Bacteroides sp. 2_2_4]
          Length = 407

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 116/245 (47%), Gaps = 16/245 (6%)

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           L+  +I  +I      ++   +LK  L  I+ +L+Y  ++          + +L K+   
Sbjct: 149 LTLEDIDKYIEYYTINQVQRNTLKEYLCCIRVYLRYAVEKGWC-------IADLDKALIT 201

Query: 126 PRALNEKQALTL-----VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           P+  +E+   +      V  +L     +T    +R+ AI  LL   GLR SE  +L   +
Sbjct: 202 PKVYSEENLPSFLPWDKVQKLLQTVKEQTGKSASRDYAIFMLLAMYGLRCSEVANLKLSD 261

Query: 181 IMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPL 238
           I   +  + I+  K  + +I+PLL +V +AI++Y  +  P +++ +  L        +P+
Sbjct: 262 IDWRKEQIYIKRAKNCRPQILPLLHNVGEAIIDYLKNGRPNEVDSD-SLFFCAPAPIRPI 320

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +       + +  +Y G+ +     H+LRHS AT L++ G  L+ +  +LGH  +  T++
Sbjct: 321 SCNAIASVVYRYLKYSGINIKHKGPHSLRHSHATFLINEGQTLKDVGDLLGHKSMEATRV 380

Query: 298 YTNVN 302
           Y  V+
Sbjct: 381 YAKVD 385


>gi|188526769|gb|ACD62266.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 40/60 (66%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 99  TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|238923684|ref|YP_002937200.1| site-specific tyrosine recombinase [Eubacterium rectale ATCC 33656]
 gi|238875359|gb|ACR75066.1| site-specific tyrosine recombinase [Eubacterium rectale ATCC 33656]
          Length = 331

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 71/154 (46%), Gaps = 9/154 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           ++ A+L L Y  G R++E   L   +I      + + GKGDK RI  L      AI  Y 
Sbjct: 174 KDKALLELFYSTGCRVTEMERLDISDIDFQTKEVLLFGKGDKHRISYLNAKAEIAIRNYL 233

Query: 215 DLCPFDLNLNIQLPLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           D      N N +  LF   R   G+   P + +R IR L    G+      H +RH+ AT
Sbjct: 234 D----SRNDN-EEALFVSDRKPYGRLKKPAIEKR-IRVLGEKSGIGRRLYPHLIRHTTAT 287

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             L  G  +  +Q ILGH  ++TT IY  V+  N
Sbjct: 288 DGLDRGMPVEEVQQILGHVNIATTMIYAEVSRAN 321


>gi|215408008|emb|CAS02331.1| integron integrase [uncultured bacterium]
          Length = 159

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 40/60 (66%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 99  TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|329315330|gb|AEB89743.1| Transposase A from transposon Tn554 [Staphylococcus aureus subsp.
           aureus T0131]
          Length = 302

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 99/217 (45%), Gaps = 37/217 (17%)

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
            K FL ++ K +   + N+L +R  KK     R L  K+   ++D    HT         
Sbjct: 80  FKGFLHHVNKGRY--QKNVLKLRVKKKQ---IRTLRSKEVKQIIDAC--HTK-------- 124

Query: 155 RNSAILYLLYGCGLRISEALSL--------------TPQNIMDDQSTLRIQGKGDKIRIV 200
           R+  IL L+Y  GLRI E LSL              TP+++  +++ ++++ K   I + 
Sbjct: 125 RDKLILMLMYEGGLRIGEVLSLRLEDIVTWDNQIHLTPRDVNVNEAYIKLR-KERTIHVS 183

Query: 201 PLLPSVRKA--ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
             L S+     I EY +    D    + + L  G  GKPL        +R++ +  G+  
Sbjct: 184 KELMSLYTDYLIYEYSEELEHDY---VFISLKEGYFGKPLKYQSVLDLVRRIVKRTGIEF 240

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             T+H LRH+ AT L+  G D+  +Q  LGH  + TT
Sbjct: 241 --TSHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTT 275


>gi|154000898|gb|ABS57017.1| integrase [uncultured bacterium]
 gi|154000900|gb|ABS57018.1| integrase [uncultured bacterium]
 gi|154000902|gb|ABS57019.1| integrase [uncultured bacterium]
 gi|154000906|gb|ABS57021.1| integrase [uncultured bacterium]
 gi|154000912|gb|ABS57024.1| integrase [uncultured bacterium]
 gi|154000920|gb|ABS57028.1| integrase [uncultured bacterium]
 gi|154000924|gb|ABS57030.1| integrase [uncultured bacterium]
 gi|154000928|gb|ABS57032.1| integrase [uncultured bacterium]
 gi|154000934|gb|ABS57035.1| integrase [uncultured bacterium]
 gi|154000938|gb|ABS57037.1| integrase [uncultured bacterium]
 gi|154000942|gb|ABS57039.1| integrase [uncultured bacterium]
 gi|154000946|gb|ABS57041.1| integrase [uncultured bacterium]
 gi|154000948|gb|ABS57042.1| integrase [uncultured bacterium]
 gi|154000950|gb|ABS57043.1| integrase [uncultured bacterium]
 gi|154000954|gb|ABS57045.1| integrase [uncultured bacterium]
 gi|154000956|gb|ABS57046.1| integrase [uncultured bacterium]
 gi|154000960|gb|ABS57048.1| integrase [uncultured bacterium]
 gi|154000963|gb|ABS57049.1| integrase [uncultured bacterium]
 gi|154000965|gb|ABS57050.1| integrase [uncultured bacterium]
 gi|154000969|gb|ABS57052.1| integrase [uncultured bacterium]
 gi|188526755|gb|ACD62259.1| IntI1 integrase [uncultured bacterium]
 gi|188526767|gb|ACD62265.1| IntI1 integrase [uncultured bacterium]
 gi|188526786|gb|ACD62274.1| IntI1 integrase [uncultured bacterium]
 gi|188526788|gb|ACD62275.1| IntI1 integrase [uncultured bacterium]
 gi|188526794|gb|ACD62278.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 40/60 (66%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 99  TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|188526765|gb|ACD62264.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 40/60 (66%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 99  TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|154000944|gb|ABS57040.1| integrase [uncultured bacterium]
          Length = 158

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 40/60 (66%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 99  TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|154000952|gb|ABS57044.1| integrase [uncultured bacterium]
          Length = 158

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 40/60 (66%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 99  TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|154000958|gb|ABS57047.1| integrase [uncultured bacterium]
          Length = 158

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 40/60 (66%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 99  TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|188526771|gb|ACD62267.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 40/60 (66%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 99  TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|89147418|gb|ABD62569.1| integrase [uncultured bacterium]
          Length = 163

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 44/74 (59%)

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           P  R +R   L+    QR ++     + L    + H LRHSFATHLL  G D+R++Q +L
Sbjct: 89  PRSRKVRRHHLHENALQRAVKVAAVKVALTKQMSCHVLRHSFATHLLEAGYDIRTVQELL 148

Query: 288 GHFRLSTTQIYTNV 301
           GH  +STT IYT+V
Sbjct: 149 GHADVSTTMIYTHV 162


>gi|323344111|ref|ZP_08084337.1| phage integrase family site-specific recombinase [Prevotella oralis
           ATCC 33269]
 gi|323094840|gb|EFZ37415.1| phage integrase family site-specific recombinase [Prevotella oralis
           ATCC 33269]
          Length = 327

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 107/232 (46%), Gaps = 30/232 (12%)

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTL---VDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           S I ++    K++ +P   +E++  +L   +DN LL   H T  +      I   LY CG
Sbjct: 95  SYIPSLPKRPKTSYIPHVYSEQEVKSLFNAIDNTLLQCRHNTTCLIGL-PVIFRFLYYCG 153

Query: 168 LRISEALSL--TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI---LEYYDLCPFDLN 222
            R+ E L++  +  NI +   TL  + K  K R++PL   +++ +   + Y D  P D +
Sbjct: 154 ARVGEVLAIRNSDVNISEGFITL-TKTKNRKHRLIPLNEQMKEVLCTYMHYRDKMPLDSS 212

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-----HTLRHSFAT----HL 273
                 LF   RG+ ++     +  R++ +  G+  +        H LRH+FA     H+
Sbjct: 213 AEPDSYLFVNHRGEKISHAAVYKRFREILKVCGITHAGHGEGPRVHDLRHTFAVHSVYHM 272

Query: 274 LSNGGDLRS----IQSILGHFRLSTTQIYTNVN-------SKNGGDWMMEIY 314
           + +G D+ +    I ++LGH  + +T+ Y  +         + GGD +  I+
Sbjct: 273 VKSGMDIYTAWPIISTLLGHHDIYSTEHYIRLALEIYPALYQAGGDKLATIF 324


>gi|257413996|ref|ZP_04744923.2| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
 gi|257201563|gb|EEU99847.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
          Length = 368

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 110/238 (46%), Gaps = 22/238 (9%)

Query: 74  FISKRRTQKIGDRS-LKRSLSGIKSFLKYLKKRKITTESNIL--NMRNLKKSNSLPRALN 130
           +  K  T+   D   LKR LS ++SF  Y  K  +  +   +  +M  + + N +   L+
Sbjct: 115 YYEKDGTEHTNDEGGLKRKLSALRSFYHYYYKNGLIEDDPTVKVDMPKIHEKNII--RLD 172

Query: 131 EKQALTLVDNVLLHTS--------HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             +   L+D V    +        HE   I  R+ A++ LL G G+R+SE + L  +++ 
Sbjct: 173 VDEVAKLLDEVESGENLTARQQQYHEKTKI--RDLAMMTLLLGTGIRVSECVGLDMEDVD 230

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPL 238
              + ++I  KG    +V     VR+A+++Y      +   D ++N    LF  ++ K +
Sbjct: 231 FKNNGIKIHRKGGAEVVVYFGEEVRRALMDYMVERQKITAADGSIN---ALFLSLQNKRI 287

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           +    +  +++  + +      T H LR ++ T L    GD+  +  +LGH  ++TT+
Sbjct: 288 SVRSVENMVKKYSKLVTTLKHITPHKLRSTYGTSLYRETGDIYLVADVLGHKDVNTTR 345


>gi|218514489|ref|ZP_03511329.1| site-specific tyrosine recombinase XerD [Rhizobium etli 8C-3]
          Length = 77

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 5/72 (6%)

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           P   + H +RH+FA+HLL+NG DLR +Q +LGH  +STTQIYT+V  +      ++   Q
Sbjct: 10  PSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER-----LQQLVQ 64

Query: 317 THPSITQKDKKN 328
           TH  + ++ KK+
Sbjct: 65  THHPLAKQAKKH 76


>gi|312200217|ref|YP_004020278.1| integrase family protein [Frankia sp. EuI1c]
 gi|311231553|gb|ADP84408.1| integrase family protein [Frankia sp. EuI1c]
          Length = 310

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 111/300 (37%), Gaps = 29/300 (9%)

Query: 6   LPEIVSFELLKERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           LP   +  L  +R  W  L  L ++ G S  T ++Y     ++                I
Sbjct: 12  LPAAGAVALAGDRDPWPALVALWLDSGFSPRTREAYGRAVAEW--------TRACEAWGI 63

Query: 64  RQLSYTEIRAFISKRRTQKIGDRS--LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
             L      A    R  +  G  S  + R L+ + S   Y     +   S +  ++    
Sbjct: 64  HPLDARRPHADRWARDLEAAGQASTTIGRKLASVASVYAYALDEHLIDASPLAKVKR--- 120

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
               P+  +  QA  +  +              R SA++ LL   GLR+SEA+      +
Sbjct: 121 ----PKTTDRHQAPGMTLDQARAFLAAADADGPRTSALMRLLLANGLRVSEAIEADVDQL 176

Query: 182 MDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
             ++    LRI GKG K   V L P   +AI  Y       L      PLF    G  L+
Sbjct: 177 GHERGHRVLRIVGKGSKAATVVLAPPTARAIDAY-------LAGRTAGPLFVTATGNRLD 229

Query: 240 PGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                R IR+L +  GL  L  + H+LR +  T LL  G  LR  Q    H    TT+ Y
Sbjct: 230 RPAVWRTIRRLAKRAGLGDLQLSPHSLRATSVTLLLDAGASLRDAQDHARHADPRTTRAY 289


>gi|89147396|gb|ABD62558.1| integrase [uncultured bacterium]
          Length = 163

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 38/60 (63%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             Q+ ++   R  G+    + HT RHSFATHLL  G D+R+IQ +LGH  + TT IYT+V
Sbjct: 103 ALQKAVKSAIRAAGISKPGSCHTFRHSFATHLLEAGYDIRTIQELLGHADVQTTMIYTHV 162


>gi|229065704|ref|ZP_04200929.1| Phage integrase [Bacillus cereus AH603]
 gi|228715567|gb|EEL67367.1| Phage integrase [Bacillus cereus AH603]
          Length = 351

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 122/292 (41%), Gaps = 51/292 (17%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T + Y  D   FL ++      K TI TI  LS+ E+  +  +  ++K    +L+R 
Sbjct: 66  SERTKKIYLHDLSHFLRYI------KETIGTIHDLSHNEMEIYFYQL-SKKYAATTLRRK 118

Query: 92  LSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVD-----NVLLH 144
            + ++ FLKY+      ++  S+ L   ++KK   + R L  ++   ++D     N  ++
Sbjct: 119 KTVVQQFLKYVYDNTGLSDDYSSRLKKVSVKKEELVNRDLFPEEVNEILDALKKTNFFMY 178

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIV 200
           T             + +LL   GLRI E  +    +++   S     LR+ GKG+K R V
Sbjct: 179 T-------------LFFLLTTTGLRIEEVANAKWADLVFHSSLNAYLLRVVGKGNKAREV 225

Query: 201 PLLPSVRKAILEYYDLCPF--------DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
            +   V        D+C          +L+ +          G         +Y+ +   
Sbjct: 226 RIFEDVLD------DICRLRQLRKQTSELDASSTSAFLPKADGSYYRADYLSKYVAEKIE 279

Query: 253 YLGLPL------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              LP         T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y
Sbjct: 280 ETNLPFLRYRKDRITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERY 331


>gi|188526782|gb|ACD62272.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 40/60 (66%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 99  TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|289650500|ref|ZP_06481843.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. aesculi str. 2250]
          Length = 279

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 98/222 (44%), Gaps = 23/222 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W  NL+  R     T ++Y+ D   F  F+   + +       RQ++ + + A+ +    
Sbjct: 33  WFANLDNPR-----TRRAYQNDLTDFSAFIGLASADDF-----RQVTRSHVLAWRANLEQ 82

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVD 139
           + +   +++R L+ + S   +L       ESN +   N       P+   NE +   L D
Sbjct: 83  RGLAGATIRRKLAALASLFDHL------LESNAIAGGNPVHGVKRPKIESNEGKTPALGD 136

Query: 140 N---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194
           +    LL    E+     R+ A+L +L   GLR  EA  L   +I + +    L+I GKG
Sbjct: 137 HQAKALLEAPDESTLKGLRDRAMLAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKG 196

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
            K+R +PL P     I  Y +     L  + ++PLF  +RGK
Sbjct: 197 GKVRYLPLHPVAAGRIHWYLERSGHHLG-DKKVPLFISLRGK 237


>gi|188526779|gb|ACD62271.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 40/60 (66%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 99  TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQGLLGHSDVSTTMIYTHV 158


>gi|89147646|gb|ABD62682.1| integrase [uncultured bacterium]
          Length = 163

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 39/64 (60%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+    Q+ +R   R  G+    T HT RHSFAT LL  G D+R++Q +LGH  + TT I
Sbjct: 99  LDESSLQKAVRAAARLAGIAKHVTCHTFRHSFATQLLEAGYDIRTVQELLGHQDVKTTMI 158

Query: 298 YTNV 301
           YT+V
Sbjct: 159 YTHV 162


>gi|303239646|ref|ZP_07326171.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302592817|gb|EFL62540.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 333

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 141/324 (43%), Gaps = 42/324 (12%)

Query: 11  SFELLKERQNWLQNLEIER-GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           SFEL  +R         ER  LS  T++ YE + ++F+ +L+   E  +    I   +  
Sbjct: 13  SFELFLDR--------CERENLSPSTIKFYEDNMKRFIKYLSI--EHNLQNPLIPDFNSV 62

Query: 70  EIRAFISK--------------RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
            I  +++K               R +K+G +S+K     +++   +       +E     
Sbjct: 63  HINKYLAKIKKSKKWNGHTHIKAREEKVGSQSIKTYARALRAIGNWFFTEDYISE----- 117

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNV-LLHTSHETKW-IDARNSAILYLLYGCGLRISEA 173
             N+ ++  LP+A    + +   D +  + T  +TK  +  RNS I  L +  G+R    
Sbjct: 118 --NIIETVDLPKAAKSDKEVLCDDEIKAIITKFDTKTKLGLRNSIIFLLAFDAGIRQGGI 175

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
            +L   ++     TLR++ KG  I ++PL  +V   I EY  +  +    N+  PL   I
Sbjct: 176 ANLKIGDVDLKAKTLRVRLKGGNITVLPLGNTVLWQIKEY--IVKYRGIDNLNEPLLTNI 233

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            G  L     ++   +L++  G+ +    H  RH+FAT+ +S G   + +Q  L H   +
Sbjct: 234 NGSKLTENAIKKMFSKLKKKSGV-IRVNCHLGRHTFATNYISEGHTQQELQLALAHESDT 292

Query: 294 TTQIYTNVNSK-----NGGDWMME 312
            ++ Y +++ K      G D  M+
Sbjct: 293 MSKEYVHLDEKINYVRRGADSHMD 316


>gi|257463481|ref|ZP_05627875.1| integrase/recombinase [Fusobacterium sp. D12]
 gi|317061040|ref|ZP_07925525.1| integrase/recombinase [Fusobacterium sp. D12]
 gi|313686716|gb|EFS23551.1| integrase/recombinase [Fusobacterium sp. D12]
          Length = 333

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 137/297 (46%), Gaps = 50/297 (16%)

Query: 35  TLQSYECDTRQFLIFL----AFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLK 89
           TLQ Y    + FL F+    A + +++I +  ++ +   ++  +IS   + +K+   S+ 
Sbjct: 36  TLQDYLFYLKDFLSFVYEGEASFQQDEI-LPLMKGVEREDVEQYISHLLQERKMKKSSVN 94

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           + +S +KS  K L+  ++  E+    ++  K + +L             DN+L  +S++ 
Sbjct: 95  KVISAMKSLYKELEAYQV--ENPFRYVKLFKTARNL-------------DNILKISSNDI 139

Query: 150 KWI----------DARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQG-KGDK 196
           K I          D RN  ILY LY  G+R  E L +  +++++ + +  L+++  K  K
Sbjct: 140 KHIIERFQIKSEKDYRNLMILYTLYYTGVRSDELLHMEFRHLLNREGSYFLKLEKTKSGK 199

Query: 197 IRIVPLLPSVRKAILEY-------YDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            +  P+ P++ + + EY       + L   DL N  I    F        N  +  R + 
Sbjct: 200 EQYKPIHPALMEELQEYKKEMKALHRLEEEDLQNHFIFCSHFEK------NKALSYRALY 253

Query: 249 QLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            L + LGL +    + H +RH+ AT L  NG DL  I+  LGH     T++Y N  S
Sbjct: 254 DLIKSLGLSIEKDMSPHNIRHAIATELSLNGADLVEIRDFLGHADTKVTEVYINAKS 310


>gi|89147422|gb|ABD62571.1| integrase [uncultured bacterium]
          Length = 163

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 39/59 (66%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            QR + +  R  GL    + HTLRHSFATHLL  G D+R++Q +LGH  + TT IYT+V
Sbjct: 104 LQRAMSRAGRAAGLTKRISCHTLRHSFATHLLQQGYDIRTVQELLGHKDVKTTMIYTHV 162


>gi|89147398|gb|ABD62559.1| integrase [uncultured bacterium]
          Length = 163

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           P  R +R   L+  V Q+ +    +  G+    + HT RHSFATHLL  G D+R++Q +L
Sbjct: 89  PRTRKVRRHHLSENVIQKAVSAAIQRSGIAKPGSCHTFRHSFATHLLEAGYDIRTVQELL 148

Query: 288 GHFRLSTTQIYTNV 301
           GH  ++TT IYT+V
Sbjct: 149 GHKDVTTTMIYTHV 162


>gi|237711592|ref|ZP_04542073.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|229454287|gb|EEO60008.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA]
          Length = 381

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 70/149 (46%), Gaps = 10/149 (6%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           A L+  Y CGLR+S+  +L  ++I  D    R+     K      LP  R A+       
Sbjct: 230 AYLFSCY-CGLRLSDIYALRWKDIFLDGEQYRVSTVMQKTTTPIYLPLSRHAV----RWL 284

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
           P       +L +F G+   P  P +  + + +     G+    T HT RHSFAT +L+ G
Sbjct: 285 PERDGEGDELKIFAGL---PAEPNI-NKVLAKWAVAAGITKKITYHTSRHSFATMMLTLG 340

Query: 278 GDLRSIQSILGHFRLSTTQIYTN-VNSKN 305
            DL +   +LGH  + TTQIY   V+SK 
Sbjct: 341 ADLYTTSKLLGHSNVKTTQIYAKIVDSKK 369


>gi|188526763|gb|ACD62263.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 40/60 (66%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 99  TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|215408032|emb|CAS02343.1| integron integrase [uncultured bacterium]
          Length = 138

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 40/60 (66%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 79  TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 138


>gi|291459078|ref|ZP_06598468.1| site-specific recombinase, phage integrase family [Oribacterium sp.
           oral taxon 078 str. F0262]
 gi|291418332|gb|EFE92051.1| site-specific recombinase, phage integrase family [Oribacterium sp.
           oral taxon 078 str. F0262]
          Length = 364

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 107/230 (46%), Gaps = 29/230 (12%)

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           ++S+KR +S +KSF KYL + ++ +E  +++L +  L+    +   L+E +   L+D   
Sbjct: 123 EQSIKRKISSLKSFYKYLYRDQLISEDTASLLILPKLRDREII--RLDENEVADLLDTAE 180

Query: 143 LHTS--------HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
                       HE   +  R++AIL L+ G G+R+SE + L  Q++  +   +RI  KG
Sbjct: 181 SGEKLTERQQRFHEKTAL--RDTAILSLMLGTGIRVSECVGLNIQDLDLNSDGIRIHRKG 238

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--------LFRGIRGKPLNPGVFQRY 246
            K   V     V + +  Y       L    ++P        LF  ++ K +     +  
Sbjct: 239 GKEVTVYFSDEVERILSSY-------LKARKKMPALSSSEDALFLSLQKKRIGVRAVENM 291

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           +++    +      T H LR ++ T+L    GD+  +  +LGH  ++TT+
Sbjct: 292 VKKYASAVTPLKHITPHKLRSTYGTNLYRETGDIYLVADVLGHEDVNTTK 341


>gi|154000940|gb|ABS57038.1| integrase [uncultured bacterium]
          Length = 158

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 40/60 (66%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 99  TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|188526761|gb|ACD62262.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 40/60 (66%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 99  TFQRAFKRAVEQAGITKPVTPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|291538944|emb|CBL12055.1| Site-specific recombinase XerD [Roseburia intestinalis XB6B4]
          Length = 368

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 109/238 (45%), Gaps = 22/238 (9%)

Query: 74  FISKRRTQKIGDRS-LKRSLSGIKSFLKYLKKRKITTESNIL--NMRNLKKSNSLPRALN 130
           +  K  T+   D   LKR LS ++SF  Y  K  +  +   +  +M  + + N +   L+
Sbjct: 115 YYEKDGTEHTNDEGGLKRKLSALRSFYHYYYKNGLIEDDPTVKVDMPKIHEKNII--RLD 172

Query: 131 EKQALTLVDNV--------LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             +   L+D V             HE   I  R+ A++ LL G G+R+SE + L  +++ 
Sbjct: 173 VDEVAKLLDEVESGENLTARQQQYHEKTKI--RDLAMMTLLLGTGIRVSECVGLDMEDVD 230

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPL 238
              + ++I  KG    +V     VR+A+++Y      +   D ++N    LF  ++ K +
Sbjct: 231 FKNNGIKIHRKGGAEVVVYFGEEVRRALMDYMVERQKITAADGSIN---ALFLSLQNKRI 287

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           +    +  +++  + +      T H LR ++ T L    GD+  +  +LGH  ++TT+
Sbjct: 288 SVRSVENMVKKYSKLVTTLKHITPHKLRSTYGTSLYRETGDIYLVADVLGHKDVNTTR 345


>gi|188526753|gb|ACD62258.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 40/60 (66%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 99  TFQRAFKRTVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|229599881|ref|YP_002860872.1| integrase/recombinase XerD [Clostridium botulinum Ba4 str. 657]
 gi|229260405|gb|ACQ51441.1| integrase/recombinase XerD [Clostridium botulinum Ba4 str. 657]
          Length = 212

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 94/208 (45%), Gaps = 20/208 (9%)

Query: 105 RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW----IDARNSAIL 160
           RK+T+ + +    N+       R   +KQ  T +D+VL     E        + R+ AI+
Sbjct: 8   RKLTSINQLFKSININYGVKCKRMKEQKQ--TFLDDVLTRDEIEKMLNKCGTNIRDKAII 65

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPF 219
             LY  GLR+SE L L  ++I   + ++ I+GKG K R + +   +++  L+Y  +  P 
Sbjct: 66  MTLYKTGLRVSELLQLRIRDIR--KKSIEIEGKGGKYRYIIVPKELKEIWLQYLKVRKPV 123

Query: 220 DLNLNIQLPLFRGIRGKPLNPGV---FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
           + +      LF G  G+     +    ++Y  Q R   G       H LRHSF   L   
Sbjct: 124 ETD-----KLFVGTNGEMHRHNINRIIKKYAVQARITKG---KAHPHALRHSFCKALAIQ 175

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              +  I  + GH  L+TT+IYT    K
Sbjct: 176 NVGIEVIADLAGHEDLNTTRIYTRQTQK 203


>gi|154000926|gb|ABS57031.1| integrase [uncultured bacterium]
 gi|154000971|gb|ABS57053.1| integrase [uncultured bacterium]
          Length = 158

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 40/60 (66%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 99  TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|168185276|ref|ZP_02619940.1| tyrosine recombinase XerD [Clostridium botulinum Bf]
 gi|182671679|gb|EDT83640.1| tyrosine recombinase XerD [Clostridium botulinum Bf]
          Length = 212

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 94/208 (45%), Gaps = 20/208 (9%)

Query: 105 RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW----IDARNSAIL 160
           RK+T+ + +    N+       R   +KQ  T +D+VL     E        + R+ AI+
Sbjct: 8   RKLTSINQLFKSININYGVKCKRMKEQKQ--TFLDDVLTRDEIEKMLKKCGTNIRDKAII 65

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPF 219
             LY  GLR+SE L L  ++I   + ++ I+GKG K R + +   +++  L+Y  +  P 
Sbjct: 66  MTLYKTGLRVSELLQLRIRDIR--KKSIEIEGKGGKYRYIIVPKELKEIWLQYLKVRKPV 123

Query: 220 DLNLNIQLPLFRGIRGKPLNPGV---FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
           + +      LF G  G+     +    ++Y  Q R   G       H LRHSF   L   
Sbjct: 124 ETD-----KLFVGTNGEMHRHNINRIIKKYAVQARITKG---KAHPHALRHSFCKALAIQ 175

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              +  I  + GH  L+TT+IYT    K
Sbjct: 176 NVGIEVIADLAGHEDLNTTRIYTRQTQK 203


>gi|167946117|ref|ZP_02533191.1| site-specific tyrosine recombinase XerD [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 223

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 15/181 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +ERGLS+ TL +Y+ D  +  ++L     +++      +    ++  +++    Q   
Sbjct: 4   LWMERGLSQNTLVAYQSDLSKLSLWLQRQRGKRLL-----EAGQKDLLGYLAVLAQQGRQ 58

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            RS  R LS ++ F +Y  +  + +      + + K+++ + RA +    L+        
Sbjct: 59  ARSSARLLSCMRQFYQYAVRESLLSADPSAQIESPKRASPVTRAPSLSARLS-------S 111

Query: 145 TSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
                 W      R+  +L LLY  GLR+SE + L P+ I   Q  +R+ GKGDK R+VP
Sbjct: 112 YWRPPTWAILQGVRDRTMLELLYATGLRVSELIDLRPEQISLSQGVVRVIGKGDKERLVP 171

Query: 202 L 202
           +
Sbjct: 172 M 172


>gi|294647358|ref|ZP_06724951.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294809021|ref|ZP_06767743.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|292637317|gb|EFF55742.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294443746|gb|EFG12491.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 330

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 123/283 (43%), Gaps = 36/283 (12%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS----KRRTQKIGD 85
           G S  TL  Y     + L+ L+           I  ++ T+IR ++S    + ++ K+  
Sbjct: 67  GCSDKTLTYYRNTIERLLVTLSL---------AICHITTTDIRTYLSDYQEEHQSSKVTI 117

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            +++R  S   SF  +L+      +S +  +  +K  + +   L+++Q   L D+     
Sbjct: 118 DNMRRIFS---SFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQLRDSC---- 170

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
                  + R+ AI+ +L   G+R+ E + L  ++I   +    + GKG+K RIV     
Sbjct: 171 ------TNKRDLAIIDILASTGIRVGELVKLNREDIDFHERQCVVFGKGNKERIVYFNAR 224

Query: 206 VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            +  + +Y +    D   L +++  P  R      L     +  IR+L + L +P     
Sbjct: 225 TKLHLQQYLNERTDDNPALFVSLHSPHTR------LTISGVEIRIRKLGQSLSMP-KVHP 277

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           H  R + AT  +  G  +  +Q +LGH R+ TT  Y  VN  N
Sbjct: 278 HKFRRTLATMAIDKGMPIEQVQRLLGHVRIDTTLHYAIVNQNN 320


>gi|83722831|gb|ABC41687.1| integrase [uncultured bacterium]
          Length = 163

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 39/59 (66%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            QR I++      L    + HTLRHSFATHLL  G DLR++Q +LGH  +STT IYT+V
Sbjct: 104 IQRAIKRAVLAAKLTKPASTHTLRHSFATHLLEAGYDLRTVQELLGHADVSTTMIYTHV 162


>gi|304312589|ref|YP_003812187.1| Integron integrase [gamma proteobacterium HdN1]
 gi|301798322|emb|CBL46544.1| Integron integrase [gamma proteobacterium HdN1]
          Length = 334

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 98/232 (42%), Gaps = 52/232 (22%)

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
           L     +K + +P   + ++A+ ++    L  +H+          ++ L+YG G+RI+E 
Sbjct: 107 LGFSRARKPSRIPTVFSHQEAMDIIGR--LSGTHQL---------VVQLIYGTGMRINEV 155

Query: 174 LSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPS--------------------VRKAILE 212
           L L  +++    Q  +   GKGDK R+  LLP                     + +   +
Sbjct: 156 LRLRIKDVDFSMQQIIVRAGKGDKDRVT-LLPDRLISPLKQQIDVALAVHRQDLSQGFGD 214

Query: 213 YYDLCPFDLNLNIQLPLFRGI------------------RGKPLNPGVFQRYIRQLRRYL 254
            Y         N + P ++ +                  R   L+ GV Q+ +    +  
Sbjct: 215 VYMPNALAKKYNAKAPEWQYVFAAAQMSVDPRSENQIRRRHHILDRGV-QKAVAHAMQQA 273

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
            +      HT RHSFAT LL  G D+R+IQ +LGH  + TT+IYT+V  + G
Sbjct: 274 KVYKKGNTHTFRHSFATRLLEVGYDIRTIQKLLGHADVKTTEIYTHVVKRGG 325


>gi|303247551|ref|ZP_07333822.1| integrase family protein [Desulfovibrio fructosovorans JJ]
 gi|302491031|gb|EFL50925.1| integrase family protein [Desulfovibrio fructosovorans JJ]
          Length = 413

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 102/224 (45%), Gaps = 22/224 (9%)

Query: 86  RSLKRSLSGIKSFLKYLKKRKIT-TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           RS   +L  ++    + +   +T   S    ++  K  N   R L  ++A  L+++V   
Sbjct: 168 RSAHYALCVVRQVFNFARDHDMTDCVSPTCKVKAPKTDNRRLRFLTHEEADKLLEHVA-K 226

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLL 203
            SHE         AI  +   CGLR  E  +LT  ++  D+ TL ++  K  + RI  + 
Sbjct: 227 RSHEL-------HAISLVSLHCGLRAGEIFNLTWSDVDFDRETLTLRDTKNGRTRIAYMT 279

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYLGLPLS-- 259
             VR  +       P D       P+F G  G  +      F+R ++ L    G+  S  
Sbjct: 280 GQVRGMLAARVKGGPGD-------PVFPGRGGVRRSYVSNAFERAVKDLGFNEGITDSRQ 332

Query: 260 -TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               H+LRH+FA+ L+  G DL S++ ++GH  LS T+ Y++++
Sbjct: 333 KVVFHSLRHTFASWLVEQGTDLYSVKELMGHRTLSMTERYSHLS 376


>gi|89147369|gb|ABD62545.1| integrase [uncultured bacterium]
          Length = 163

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 41/64 (64%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+    Q+ ++   R  G+    + HT RHSFATHLL +G D+R++Q +LGH  + TT I
Sbjct: 99  LSESAVQKSVKSAIRNAGIAKHASCHTFRHSFATHLLESGYDIRTVQELLGHKDVRTTMI 158

Query: 298 YTNV 301
           YT+V
Sbjct: 159 YTHV 162


>gi|229014934|ref|ZP_04172022.1| Phage integrase [Bacillus mycoides DSM 2048]
 gi|228746346|gb|EEL96261.1| Phage integrase [Bacillus mycoides DSM 2048]
          Length = 351

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 122/287 (42%), Gaps = 41/287 (14%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T + Y  D   FL ++      K TI TI  LS+ E+  +  +  ++K    +L+R 
Sbjct: 66  SERTKKIYLHDLSHFLRYI------KETIGTIHDLSHNEMEIYFYQL-SKKYAATTLRRK 118

Query: 92  LSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
            + ++ FLKY+      ++  S+ L   ++KK + + R L  ++      N +L    +T
Sbjct: 119 KTVVQQFLKYVYDNTGLSDDYSSRLKKISVKKEDLVNRDLFPEEV-----NEILDALKKT 173

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPS 205
            +       + +LL   GLRI E  +    +++   S     LR+ GKG+K R V +   
Sbjct: 174 SFF---MYTLFFLLTTTGLRIEEVANAKWADLVFHSSLNAYLLRVVGKGNKAREVRIFED 230

Query: 206 VRKAILEYYDLCPF--------DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           V        D+C          +L+ +          G         +Y+ +      LP
Sbjct: 231 VLD------DICHLRQLRKQTSELDASSTSAFLPKADGSYYRADYLSKYVAEKIEETNLP 284

Query: 258 L------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                    T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y
Sbjct: 285 FLRYRKDRITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERY 331


>gi|218264265|ref|ZP_03478130.1| hypothetical protein PRABACTJOHN_03820 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222157|gb|EEC94807.1| hypothetical protein PRABACTJOHN_03820 [Parabacteroides johnsonii
           DSM 18315]
          Length = 413

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 129/300 (43%), Gaps = 48/300 (16%)

Query: 32  SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           S +T+  Y+   R+   F+  FY ++ IT     +LS   I+AF    +T+      L R
Sbjct: 132 SPVTINRYKNVLRKLETFVPRFYEKDDITFH---ELSPDFIKAFDVFLKTEA----GLCR 184

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           +   I  ++K LKK        I NM   K+          K      D V L T++E +
Sbjct: 185 N--TIVRYMKCLKK--------ITNMAIAKEWMRKDPFYGYKMEQDETDPVFL-TNNELQ 233

Query: 151 WIDARNSAILYL-------LYGC--GLRISEALSLTPQNIMDDQS----------TLRIQ 191
            I  RN  I  L       L+ C  GL  ++  +L P+++  D +           L  +
Sbjct: 234 AIMNRNFDIPRLELVKDIFLFACFTGLAFADVSTLKPEHLEQDNNGDWWIRKGRVKLERR 293

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            K   I  +PLLP V  AIL+ Y+  P  L     LP+    +           Y++++ 
Sbjct: 294 RKSSSIANIPLLP-VPLAILKKYESHPICLKQGTCLPVVCNQKA--------NSYLKEIA 344

Query: 252 RYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            + G+  + T H  RH+FAT + L+N   L+ + ++LGH     TQ Y  V  KN  D M
Sbjct: 345 DFCGIKKNLTTHAARHTFATTVTLANNVPLQEVSAMLGHASTRMTQHYARVMDKNLKDNM 404


>gi|89147361|gb|ABD62541.1| integrase [uncultured bacterium]
          Length = 163

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 51/93 (54%)

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           A+ E+     F  N   + P     R    +  + Q  +++  +  G+    + HT RHS
Sbjct: 70  AVTEWTWQWVFPANKISKDPRSDQSRRHHASEDMLQSEVKRAVKRAGVAKRVSCHTFRHS 129

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           FATH+L +G D+R++Q +LGH  + TTQIYT+V
Sbjct: 130 FATHMLESGYDIRTVQELLGHSSVQTTQIYTHV 162


>gi|226363472|ref|YP_002781254.1| tyrosine recombinase [Rhodococcus opacus B4]
 gi|226241961|dbj|BAH52309.1| putative tyrosine recombinase [Rhodococcus opacus B4]
          Length = 272

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 26/154 (16%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILE 212
           R   +L L   CGLR +E   +  +++ +D    +L + GKG K R++PL          
Sbjct: 127 RERVMLRLASECGLRRAEVALVHSRDLSEDLCGWSLVVHGKGRKDRVLPL---------- 176

Query: 213 YYDLCPFDLNLNIQ-LP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
                P ++   ++ LP    F G     L+P    R++ +L   L LP   T H LRH 
Sbjct: 177 -----PDEIAAELRRLPRGWAFPGNDCGHLSP----RWVGKLMTEL-LPDDWTMHKLRHR 226

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           FAT    N  ++R++Q +LGH  ++TTQ+YT V+
Sbjct: 227 FATRAYRNTRNIRAVQQLLGHESVATTQVYTAVD 260


>gi|197259952|gb|ACH56525.1| IntI1 [Salmonella enterica subsp. enterica serovar Virchow]
          Length = 130

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 41/65 (63%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V 
Sbjct: 50  FQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVL 109

Query: 303 SKNGG 307
              G 
Sbjct: 110 KVGGA 114


>gi|258517018|ref|YP_003193240.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257780723|gb|ACV64617.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 321

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 8/163 (4%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI-- 199
           LL    ++ +   R+ A+L L    G+R  EALSL   ++      + I+ +  K R+  
Sbjct: 136 LLAIPDQSTYPGLRDYALLLLQLDSGIRPKEALSLLISDVNFKSLEVYIRAENAKTRVSR 195

Query: 200 -VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            +P+ P   KAI +  ++ P D N    +P+F    G  +    + + + +    LG  L
Sbjct: 196 TLPISPITAKAIQKLINVRPSDWN---DVPIFCSCEGNKMLGNTWYKRLSKYGEKLGTKL 252

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               + LRH+FA   L NGG+  ++Q  LGH  L+ T+ Y ++
Sbjct: 253 --YPYQLRHTFALEFLRNGGNSFALQKTLGHADLNMTKRYVSL 293


>gi|154000914|gb|ABS57025.1| integrase [uncultured bacterium]
 gi|154000916|gb|ABS57026.1| integrase [uncultured bacterium]
 gi|154000922|gb|ABS57029.1| integrase [uncultured bacterium]
 gi|154000936|gb|ABS57036.1| integrase [uncultured bacterium]
          Length = 158

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 40/60 (66%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 99  TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|89147500|gb|ABD62610.1| integrase [uncultured bacterium]
          Length = 163

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 39/58 (67%)

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           Q+ ++      G+    T HTLRHSFATHLL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 105 QKMVKAASVRAGITKRVTVHTLRHSFATHLLEAGYDIRTVQELLGHSDVSTTMIYTHV 162


>gi|156138693|dbj|BAF75923.1| integron integrase [uncultured bacterium]
          Length = 180

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 40/68 (58%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R   ++    Q+ I    R  GL      HTLRHSFATHLL  G D+R+ Q +LGH  +
Sbjct: 113 VRRHHIHETTVQKAITDAVRRAGLSKPAGCHTLRHSFATHLLEAGQDIRTTQELLGHSDV 172

Query: 293 STTQIYTN 300
           STT IYT+
Sbjct: 173 STTMIYTH 180


>gi|89147642|gb|ABD62680.1| integrase [uncultured bacterium]
          Length = 164

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 41/59 (69%), Gaps = 1/59 (1%)

Query: 244 QRYIRQLRRYLGLPLSTTAHTLR-HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           QR +RQ  R  G+    T H+LR HSFATHLL +G D+R++Q  LG+  + TTQIYT+V
Sbjct: 105 QRAMRQALREAGIAKPATPHSLRRHSFATHLLESGADIRTVQEQLGYSDVRTTQIYTHV 163


>gi|28211234|ref|NP_782178.1| DNA integration/recombination protein [Clostridium tetani E88]
 gi|28203674|gb|AAO36115.1| DNA integration/recombination protein [Clostridium tetani E88]
          Length = 343

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 131/301 (43%), Gaps = 48/301 (15%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS---------YTEIRA---FI 75
           ++ L   T+ SYE   R F    A Y E+  +I  ++ ++         YT+ R    F+
Sbjct: 29  QKDLRPKTIASYESTLRLF----ARYLEDTFSINNVKDITEEMCKDYITYTKERGKYTFV 84

Query: 76  SKRRT-------------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           + + T             +KI   ++   +  +K F  +  + +IT  +N+  ++  K +
Sbjct: 85  ADKNTTFINQPSNREDYGKKISTTTVNNYIRNLKVFFNWCIEERITNVNNMQRIKQFKNN 144

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
                 L +++   LV    L T   TK+ + R+  I+ L+   G+RI E L+LT  N+ 
Sbjct: 145 RISKDQLTDEEFKRLVR--YLDT---TKYHEFRDYVIIQLIIDTGMRIGETLALTIDNVD 199

Query: 183 DDQSTLRIQG---KGDKIRIVPL---LPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRG 235
            D+  + IQ    KG K R V     +  + K  ++Y D     DL       LF   RG
Sbjct: 200 LDRRAILIQAEINKGRKDRYVFYSYTMSRLLKRWIQYKDRYVESDL-------LFCVKRG 252

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             L    F++   +  +   +    + HTLR+++A   L  GG +  +  ILGH  ++ T
Sbjct: 253 TQLQISNFEKNFSKYIKRARIDKKISPHTLRNNYARRFLLAGGSIFDLSRILGHSSVTVT 312

Query: 296 Q 296
           +
Sbjct: 313 E 313


>gi|295098993|emb|CBK88082.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87]
          Length = 187

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 91/192 (47%), Gaps = 14/192 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +LQ +      S+ T+ +Y+ D  QF  +L     E   I     +       F+ + 
Sbjct: 6   ERFLQYIYRRNSQSEKTVDAYKRDLTQFKEYL-----ESQGITNFEDVDRLTFMNFLMEL 60

Query: 79  RTQKIG----DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           R    G    + ++ R +S  +SF +YL +      + + +++  K    +P  L     
Sbjct: 61  RVLPDGTSAKNSTIARKISTYRSFYRYLNEYIGINANPLSSIKTPKNKRKIPDFL----F 116

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           L+ ++N  L T  E   ++ R+  +  ++Y CGLR+SE ++L  Q++  +Q  +RI GKG
Sbjct: 117 LSEIEN-FLDTYDENDPVEFRDKTMFTMMYACGLRVSELVNLKWQDVDLNQRCVRILGKG 175

Query: 195 DKIRIVPLLPSV 206
           +K RIVP    +
Sbjct: 176 NKERIVPFFQRI 187


>gi|89147468|gb|ABD62594.1| integrase [uncultured bacterium]
          Length = 163

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 40/64 (62%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+  V Q  + Q  R   +    T HTLRHSFATHLL NG ++R +Q +LGH  + TT I
Sbjct: 99  LSEKVMQTAMHQAVRESDIAKHVTVHTLRHSFATHLLLNGTNIREVQELLGHKNVETTMI 158

Query: 298 YTNV 301
           YT+V
Sbjct: 159 YTHV 162


>gi|145594876|ref|YP_001159173.1| phage integrase family protein [Salinispora tropica CNB-440]
 gi|145304213|gb|ABP54795.1| phage integrase family protein [Salinispora tropica CNB-440]
          Length = 332

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 118/281 (41%), Gaps = 18/281 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE-IRAFISK 77
           + WL N    R LS+ T  +Y  D   +L + A    + +    +   +Y   + +  + 
Sbjct: 27  EAWLAN----RRLSEHTRDAYRRDVGGWLDWCADADLDPLRATFLHVNAYARWLESTPTA 82

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSLPRALNEKQAL 135
           R  +     ++ R LS + S+  +L   +    + +   +  ++ + +S    L  ++  
Sbjct: 83  RSGKPPTPATVARKLSALSSWYDFLVTLRAVGTNPVTGADRPHVDRDHSATIGLTPEE-- 140

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGK 193
             VD +L      T    ARN A + LL   GLR+ E +SL   ++  ++   ++R  GK
Sbjct: 141 --VDALLTVADSATGPTAARNRAAVALLVDLGLRVGELVSLDVADLGTERGHHSVRFTGK 198

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQL 250
           G + R   L P    A+  Y         + +     PL     G  L+     R +R+L
Sbjct: 199 GGRARRRALTPGASAAVQAYLTRRARTEGVPVHRLTGPLLVTSTGARLDRHSVFRLVRRL 258

Query: 251 RRYLGLP--LSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
            R   +P     + H+LRHSFAT   + G  L  +Q  +GH
Sbjct: 259 AREASIPGWARLSPHSLRHSFATTARAEGVPLEDVQDAMGH 299


>gi|315038770|ref|YP_004032338.1| phage integrase family protein [Lactobacillus amylovorus GRL 1112]
 gi|312276903|gb|ADQ59543.1| phage integrase family protein [Lactobacillus amylovorus GRL 1112]
          Length = 322

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 125/292 (42%), Gaps = 37/292 (12%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF-ISKRR 79
           +L+  +IE G S+ T++ Y+    Q L         K  +  IR+++  ++R + +  ++
Sbjct: 51  FLEAKKIE-GCSERTIKYYKVTVEQLL---------KKVLHPIRKVTTEQMREYLVDYQK 100

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
               G  ++      I SF  +L++     E  IL         S  R +++ +A  LV 
Sbjct: 101 INNCGKTTIDNVRRNISSFFSWLEE-----EDYILK--------SPMRRIHKIRAEKLVK 147

Query: 140 NVLLHTSHET--KWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           NV+     E      D  R+ A++ LLY  G+R+ E + L   +I   +    + GKGDK
Sbjct: 148 NVITDEDIERLRDGCDCLRDVAMIDLLYSTGIRVGELVRLNRADINFSERECVVFGKGDK 207

Query: 197 IRIVPLLPSVRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            R V      +  ++ Y      D   L +++  P  R      L     +  +RQL R 
Sbjct: 208 ERRVYFDAKSKIHLINYLKSRTDDNPALFVSLDRPYSR------LKISGVEIRLRQLGRK 261

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           L L      H  R S AT  +  G  +  +Q ILGH ++ TT  Y  VN  N
Sbjct: 262 LNLD-RVHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVNQNN 312


>gi|225028632|ref|ZP_03717824.1| hypothetical protein EUBHAL_02911 [Eubacterium hallii DSM 3353]
 gi|224954042|gb|EEG35251.1| hypothetical protein EUBHAL_02911 [Eubacterium hallii DSM 3353]
          Length = 359

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 112/224 (50%), Gaps = 17/224 (7%)

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTLVDNVLL 143
           +R   R  + I++F K+  ++++  ++N  ++ NL KK       L   +   L+D V  
Sbjct: 118 ERGRMRKTASIRTFYKFFYRKQVI-KNNTASLLNLPKKHEHTIVRLEIDEIAKLLDAVEE 176

Query: 144 H---TSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               T  + K+ +    R+ AIL LL G G+R+SE + +   N+  + + ++I  KG   
Sbjct: 177 GDNLTKSQKKYHNKTKIRDLAILTLLLGTGIRVSECVGIDISNLDFETNGMKIHRKGGAD 236

Query: 198 RIVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            I+     VR+A+L+Y +    + P + + N    LF  ++ + ++    +  +++  R 
Sbjct: 237 VILYFGEEVREALLDYLEEREKIIPKEGSEN---ALFLSMQKRRISVRAVENLVKKYARP 293

Query: 254 LGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           +  PL T T H LR ++ T L    GD+  +  +LGH  ++TT+
Sbjct: 294 V-TPLKTITPHKLRSTYGTQLYQETGDIYLVADVLGHKDVNTTR 336


>gi|33867240|ref|NP_898798.1| putative transposase [Rhodococcus erythropolis]
 gi|33669074|gb|AAP74068.1| putative transposase [Rhodococcus erythropolis]
          Length = 373

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 76/150 (50%), Gaps = 4/150 (2%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ +I  L+   GLR  E L+L   +I      +R+ GKG K R VPL   V   +++ Y
Sbjct: 207 RDRSIAGLMLLSGLRSGEILALDGTDIDIGARWIRVFGKGAKERRVPLDVEV-AGLIQTY 265

Query: 215 DLCPFDLNLNIQLPLF-RGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
            L     + + +L L  +G  RG+PL P   +   R  R   G+P +   H LRH+F T 
Sbjct: 266 LLTERPESSSPRLFLVAKGPNRGQPLTPAGLRTIFRYHRIKSGVP-AGHPHALRHTFGTA 324

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +   G DL  +Q++LGH  + TT  Y ++ 
Sbjct: 325 MAEAGVDLAVMQALLGHAHVDTTARYIHLT 354


>gi|10954856|ref|NP_053276.1| hypothetical protein pTi-SAKURA_p038 [Agrobacterium tumefaciens]
 gi|6498209|dbj|BAA87661.1| tiorf36 [Agrobacterium tumefaciens]
          Length = 331

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 135/309 (43%), Gaps = 34/309 (11%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI----SKR 78
           Q L  +R +S  T+ SY    + FL F    T ++ +   +       + AF+    ++R
Sbjct: 15  QRLMRQRNVSTHTVASYRDTFKLFLRFAHRKTGKQPSSLMLEDFDAELVIAFLDDLTAER 74

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R+   G  +    L+ I++F ++L   + T    I      ++  ++P  +  ++ +  +
Sbjct: 75  RS---GTATYNLRLTAIRAFFRFLAFEEPTVSHQI------QRVLAIPGKIGTRREVQFL 125

Query: 139 --DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGK 193
             D +  LL       WI  R+  +L      G+R+SE + L    + +D  + +R  GK
Sbjct: 126 VRDEIKALLAAPDRRLWIGRRDYCLLLTAIQTGMRLSELVGLDRGAVTLDTGAHIRCFGK 185

Query: 194 GDKIRIVPL---LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ----RY 246
           G K R+ PL   L SV K  L+   L   D+       LF  + G  ++P   Q    ++
Sbjct: 186 GRKERVTPLTKILSSVLKQWLDEPRLGQSDI-------LFPTVHGSRMSPDAVQYLLAKH 238

Query: 247 IRQL-RRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           ++Q  ++Y  L     + H LRHS A  LL  G D   I   LGH    +TQ Y + +  
Sbjct: 239 VKQAAQQYPSLRAKRISPHVLRHSAAMELLDAGVDSTVISLWLGHESTRSTQAYLHAHLA 298

Query: 305 NGGDWMMEI 313
             G  + ++
Sbjct: 299 IKGAALAKV 307


>gi|330826868|ref|YP_004390171.1| integrase family protein [Alicycliphilus denitrificans K601]
 gi|329312240|gb|AEB86655.1| integrase family protein [Alicycliphilus denitrificans K601]
          Length = 331

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 120/287 (41%), Gaps = 23/287 (8%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ----TIRQLSYTEIRAFISKRRTQK- 82
           +R  S  T+ SY    R  L F     + +I +Q    T  Q+  + + AF+   ++ + 
Sbjct: 22  QRQASPHTISSYRDSFRLLLRF----AQRRIGVQPQRLTFEQIDASLVAAFLEDLQSARG 77

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           I   S    L+ I+SF +Y      T  + I  +  +  S    RA     A   +D  L
Sbjct: 78  ISAASRNLRLTAIRSFFRYAAFELPTHAAQIQRVLAIP-SKRCTRAQIGFLAREEID-AL 135

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVP 201
           LH          R+ A++ L    GLR+SE  +L   +  +   + +R+ GKG K R+ P
Sbjct: 136 LHAPDLQTRAGRRDHALMLLAVQTGLRLSELTALRRDDTELGVGAHVRVIGKGRKERVTP 195

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ--LRRYLGLPL- 258
           L  +  +A+     L   D   ++   +F   RG  L+    Q  + +   R     P  
Sbjct: 196 LTKATAQALRAL--LREIDAEQDL---VFCSARGTRLSADAVQHLVSKHVARAAQSCPSL 250

Query: 259 ---STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                T H LRHS A  LL  G D   I   LGH  + TTQIY + N
Sbjct: 251 ACKHVTPHVLRHSAAMELLQAGVDRTVIAMWLGHESIETTQIYLDAN 297


>gi|158312284|ref|YP_001504792.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158107689|gb|ABW09886.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 329

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 118/290 (40%), Gaps = 22/290 (7%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  ++  S  T+ +Y    R  L F    T +  +  ++  L+ T I  F+     Q+ G
Sbjct: 16  LARQKKASPNTVAAYRDTCRLLLAFAQSKTGKPPSSLSLADLNATLIGEFLHHLEEQR-G 74

Query: 85  DRSLKRS--LSGIKSFLKYLKKRK---ITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           + +  R+  L+ I S   Y   R        S +L +   ++  ++   L  ++      
Sbjct: 75  NGTATRNARLAAIHSLFTYAAPRAPEHAAVISQVLAIPPRRRERAIVSYLTAEEI----- 129

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIR 198
           + L+     + W   R+ ++L L    GLR+SE   L  Q+I +     +R  GKG K R
Sbjct: 130 DALVAAPDRSTWHGRRDRSLLLLDVQTGLRVSELTGLNRQDIHLGAGPHVRCHGKGRKDR 189

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
             PL     K I  +      +L+ +   PLF    G  L+    +R + +         
Sbjct: 190 ATPLTTQTVKVIRTWL----AELSPDPTGPLFPTQPGGRLSRDAVERLVAKHTATAADTC 245

Query: 259 ST------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +      T HTLRHS A  LL  G D   I   LGH    TTQIY + +
Sbjct: 246 PSIKEKHVTPHTLRHSAAMTLLKAGVDTSVIALWLGHEGTETTQIYLHAD 295


>gi|78776978|ref|YP_393293.1| integron integrase [Sulfurimonas denitrificans DSM 1251]
 gi|78497518|gb|ABB44058.1| Integron integrase [Sulfurimonas denitrificans DSM 1251]
          Length = 320

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 79/193 (40%), Gaps = 63/193 (32%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           L+YGCGLR+SE  ++  ++I      + +  GK  K R +PL   ++             
Sbjct: 129 LMYGCGLRMSEVQNIRIKDIDFGFDKIYVWDGKSLKDRTLPLPMKIKD------------ 176

Query: 221 LNLNIQLPLFRGIRGKPLN--------PGVFQR------------YI------------- 247
             L IQ+   R +  K L         P  F+R            YI             
Sbjct: 177 -ELKIQVEKVRELHQKDLKDGYGSVYIPYAFERKFPKAKFETKWQYIFPMNTIATDPRSG 235

Query: 248 -RQLRRYLGLPLS---------------TTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
            R+    L   LS                T+H  RHS+ATHLL  G DLRSIQ +LGH  
Sbjct: 236 ERRRHHILDATLSRNIKQAVTKSNIDKRVTSHIFRHSYATHLLQAGIDLRSIQELLGHKS 295

Query: 292 LSTTQIYTNVNSK 304
           + TT IYT+V S+
Sbjct: 296 VETTMIYTHVVSE 308


>gi|331084863|ref|ZP_08333951.1| hypothetical protein HMPREF0987_00254 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410957|gb|EGG90379.1| hypothetical protein HMPREF0987_00254 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 354

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 129/300 (43%), Gaps = 36/300 (12%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLA----FYTEE---KITIQTIRQLSYTEIRAFI---- 75
           +E   S  T  SY  D R F  FL      Y +    + T++ + QLS  +I  ++    
Sbjct: 38  MEPTTSAKTRISYAYDIRTFFYFLVECNPLYRDRSTTQFTLEDLDQLSSVDIEEYLEYLK 97

Query: 76  ----SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
               S+ +     ++ L R +S ++SF  Y  KR+   ++  L +   K        L+ 
Sbjct: 98  VYESSENKQITNSEQGLARKMSALRSFYGYFFKRQAIEKNPTLLVDMPKLHEKAIIRLDT 157

Query: 132 KQALTLVDNVLLHTSH----------ETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
            +   L+D +    +           +TK+   R+ AI+ LL G G+R+SE + L   ++
Sbjct: 158 DEVAILLDYIETCGNQLTGQKKVYYEKTKY---RDLAIITLLLGTGIRVSECVGLDINDV 214

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGK 236
               + +++  KG    +V     V KA+ +Y +L   ++     LP     LF   + K
Sbjct: 215 DFKNNGVKVTRKGGNEMVVYFGREVEKALRDYLELTRKNIT---PLPDHENALFLSTQRK 271

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            +     +  +++  + +      T H LR ++ T L    GD+  +  +LGH  ++TT+
Sbjct: 272 RMGVQAVENMVKKYAKQVTPNKKITPHKLRSTYGTSLYKETGDIYLVADVLGHKDVNTTK 331


>gi|302387673|ref|YP_003823495.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302198301|gb|ADL05872.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 339

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 117/281 (41%), Gaps = 33/281 (11%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLS 93
           TL+ Y  +  + L FL          + I  ++  ++R +    R Q  I   +++  L 
Sbjct: 73  TLKQYTTEICKMLDFLG---------KRIEDITAMDLRYYYGVMREQHGIKMTTMQTRLH 123

Query: 94  GIKSFLKYLKKRKITTESNI--LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
            + SF  +L   ++ T + +  + +  L K+   P +  E +AL +   VL         
Sbjct: 124 YLSSFWDFLTTEELVTSNPVKRVGILKLAKTIKKPFSQEEMEALRVNCTVL--------- 174

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR---- 207
              R+ A++  LY  G+R+SE   L   +I   +  L + GKG K R V L  + R    
Sbjct: 175 ---RDRALMEFLYSTGVRVSELALLNVCDIEMGRQELIVFGKGSKERKVYLTDNARFYLK 231

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKP---LNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           + + E               PLF  +  +P   L     Q   RQL R  G+      H 
Sbjct: 232 RYLKERMKEEGITEEELENKPLFATL-DQPHARLTVAGIQYMFRQLGRRAGVK-KVHPHR 289

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            R + AT LL+ G  +  +  +LGH +L TT IY  V  +N
Sbjct: 290 FRRTIATDLLNRGMPVEQVSKLLGHEKLDTTMIYCTVQEEN 330


>gi|271965872|ref|YP_003340068.1| integrase family protein [Streptosporangium roseum DSM 43021]
 gi|270509047|gb|ACZ87325.1| integrase family protein [Streptosporangium roseum DSM 43021]
          Length = 339

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 91/231 (39%), Gaps = 13/231 (5%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL---NEKQALTLVDNVLL 143
           S+ R+ S    FL +     +   + +  +   K+    P+ L       A  L      
Sbjct: 83  SVNRAWSAWNQFLSFCVAEGLLEGNPMAAVPRPKQPAKAPKPLLGDGSASATLLERIAAG 142

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--GKGDKIRIVP 201
                  W++ R+  +L L    G+R +E L LT  +I       RIQ  GKG + R +P
Sbjct: 143 ARRARDPWVE-RDLVVLALALVTGMRSAELLGLTLGSIGGSPGDRRIQVVGKGGRSRSLP 201

Query: 202 LLPSVRKAILEYYD--LCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-- 256
           +   V + +  Y    +  F L+ L     L      +PL  G  Q  +RQ  R+ G+  
Sbjct: 202 IEAPVERLVERYLHSRMVRFGLSALPRSAALLVDTGNEPLRRGGLQYLVRQCYRHAGVHD 261

Query: 257 --PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
                T  H LRH FAT L   G     +  +LGH  + T Q Y    ++ 
Sbjct: 262 RVQRGTLVHALRHEFATRLAERGASAHELMELLGHSSIVTGQAYIASTARE 312


>gi|223369798|gb|ACM88768.1| integrase [uncultured bacterium]
          Length = 163

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HTLRHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHTLRHSFATHLLQAGPDIRTVQELLGHTDVKTTQIYTHV 162


>gi|168185301|ref|ZP_02619965.1| tyrosine recombinase [Clostridium botulinum Bf]
 gi|182671650|gb|EDT83611.1| tyrosine recombinase [Clostridium botulinum Bf]
          Length = 278

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 105/209 (50%), Gaps = 24/209 (11%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY-------TE------EKITIQTIRQL 66
           ++L  L   +G S+ T++SY+ D   F  FL  Y       TE      + I+ + I+ +
Sbjct: 19  DFLNYLRTIKGKSENTIESYKLDLIMFFRFLKLYKGMVPGETEFNDIEIKDISDEDIKNI 78

Query: 67  SYTEIRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTESNILNMRNLKKSNS 124
           S T++ AF+S     +  G  +  R ++ +KSF ++L+ K KI  E+  L + + K S  
Sbjct: 79  SLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKIIKENPALELESPKISKR 138

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
            P        LTL ++  L +S + K+ + R+  I+ +   CGLR+SE   +   NI +D
Sbjct: 139 NP------VYLTLDESKRLLSSIDGKFKE-RDLCIVTMFLNCGLRLSELCGINISNIKND 191

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
              L + GKG+K R V L  +  K + +Y
Sbjct: 192 --ILTVVGKGNKERTVYLNKACIKTLNDY 218


>gi|138895723|ref|YP_001126176.1| integrase-recombinase protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|196250982|ref|ZP_03149665.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|134267236|gb|ABO67431.1| Integrase-recombinase protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|196209546|gb|EDY04322.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 243

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 7/147 (4%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            R+  I   L G G+R+ E  +L  ++I       +I GK  K+  +PL   +   +  +
Sbjct: 80  VRDYTIFVTLLGTGMRLGELCNLKWEDIDFSSQRAKIFGKARKVETIPLNSKLLSELALW 139

Query: 214 YDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
            +     L    +LP  +F  I+G+ L     ++  ++L    G+ +S   H LRH+FA 
Sbjct: 140 KEYSSDSLG---KLPEYVFTNIKGERLGENGTKQVFKRLTNETGIKVS--PHMLRHTFAR 194

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIY 298
             + +GGD+  +  +L H  + TT+IY
Sbjct: 195 KFIESGGDVSVLSKLLRHSSIKTTEIY 221


>gi|89147559|gb|ABD62639.1| integrase [uncultured bacterium]
          Length = 163

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 40/61 (65%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           G+ Q  +++     G+      H LRHSFATHLLS G D+R++Q +LGH  +STT IYT+
Sbjct: 102 GILQTALKRAVDAAGIVKRANCHGLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTH 161

Query: 301 V 301
           V
Sbjct: 162 V 162


>gi|239627800|ref|ZP_04670831.1| phage integrase [Clostridiales bacterium 1_7_47_FAA]
 gi|239517946|gb|EEQ57812.1| phage integrase [Clostridiales bacterium 1_7_47FAA]
          Length = 331

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 138/308 (44%), Gaps = 32/308 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDT----RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           N +   E++  + K+  ++Y   T    ++FL  L  Y  +   +Q I      E   + 
Sbjct: 49  NIISFPELDIFIGKIRFENYSVSTVNQYQRFLTDLLIYVGK--PVQEIAGEDVVECLNYY 106

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            + R      +  KR ++   SF  +L +R   +++ +  +  +K    +  AL  ++  
Sbjct: 107 EQARKISSSTKDHKRRIAS--SFFTFLHERGYISKNPMSTVDPIKYVAEIREALTSREVE 164

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-RIQGKG 194
            L   +   T       + R++A+L L    G R+SE +S+  ++ MD Q+   ++ GKG
Sbjct: 165 KL--RIACGT-------NIRDNAVLELFLASGCRVSEVVSMRVED-MDLQAGCGKVLGKG 214

Query: 195 DKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
            K R+V          LE Y  D     + L+ + P ++G++   L     +  IR++ +
Sbjct: 215 KKERMV-FFNDRAMEYLERYLGDRRSGAVILSKRAP-YQGLKKNAL-----ENIIRKIAK 267

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRH+FAT  L+ G  L ++  ++GH  + TT+IY    +KNG   +  
Sbjct: 268 KAGLGKRVFPHLLRHTFATRALNKGMPLPTLCDLMGHSSVETTRIY----AKNGAGKIRY 323

Query: 313 IYDQTHPS 320
            YD    S
Sbjct: 324 EYDMYAAS 331


>gi|188526757|gb|ACD62260.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 40/60 (66%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 99  TFQRAFKRAVEQAGIMKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|322433743|ref|YP_004215955.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321161470|gb|ADW67175.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 304

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 131/312 (41%), Gaps = 57/312 (18%)

Query: 20  NWLQNLEIERGLSKL---TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           N+   LE  + + K+   TL +Y  D + F +FLA    ++IT     Q+ +  I  FI+
Sbjct: 2   NFEPFLEFYKNIKKVSDDTLAAYRSDLKHFGLFLATEHVDRIT-----QIDHALIAKFIT 56

Query: 77  KRRTQK--------IGDRSLKRSLSGIKSFLKYLKK---RKITTESNILNMRNLKKSNSL 125
             +           + D ++ R L+ + SF  Y +    RK+   + I +  N  K N+ 
Sbjct: 57  YMKISGKGKGGKVGLSDATIARRLAAVSSFFDYTRATTGRKL--HNPIEDFSNRWKRNNK 114

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P+ + E     +++ +L      +     R+  ++ L    GLR+ E   L    I+ +Q
Sbjct: 115 PKPVEE----VVLEKLL------SAITSPRDRVLINLFLATGLRLGEMEQLNRDTIVIEQ 164

Query: 186 ------------STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN----IQLPL 229
                        T  ++GKG KIR           ++    L P+   +N        L
Sbjct: 165 HKGNGPNECFVIGTGEVEGKGGKIRTF---------MVSQQALIPYARYVNGRKDDHPAL 215

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F   R + ++    Q  +    +  G+   T  H LRH++ T L++ G D+  ++ ++GH
Sbjct: 216 FISERKQRMSERAMQERLAHWCKVAGVS-HTNVHRLRHTYGTRLVNAGMDILQLKELMGH 274

Query: 290 FRLSTTQIYTNV 301
             ++TT  Y  +
Sbjct: 275 SSVATTLNYAKI 286


>gi|260462709|ref|ZP_05810915.1| phage integrase family protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259031615|gb|EEW32885.1| phage integrase family protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 106

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 42/68 (61%)

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           P++     R +++     G+    + HTLRHSFATHLL    D+R IQ +LGH +L TT 
Sbjct: 16  PISSRQLHRAVQEAAEVAGIRKRVSPHTLRHSFATHLLEQDVDIRVIQVLLGHSKLDTTA 75

Query: 297 IYTNVNSK 304
           +YT V+++
Sbjct: 76  LYTKVSTR 83


>gi|94442288|dbj|BAE93643.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 3/98 (3%)

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           PS  KA +  Y   PF  N     P    +    ++    Q+ I+Q      +     +H
Sbjct: 67  PSAAKAWMWQY---PFPSNHWCFDPDLGTMNRHHVHQTTVQKSIKQAVTRCDINKRVGSH 123

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             RH FATHLL NG D+R+IQ +LGH  ++TT IYT+V
Sbjct: 124 AFRHCFATHLLQNGHDIRTIQELLGHKHVTTTMIYTHV 161


>gi|291291809|gb|ADD91771.1| integrase [Pseudomonas aeruginosa]
          Length = 132

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 41/65 (63%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V 
Sbjct: 52  FQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVL 111

Query: 303 SKNGG 307
              G 
Sbjct: 112 KVGGA 116


>gi|229193213|ref|ZP_04320164.1| Integrase [Bacillus cereus ATCC 10876]
 gi|228590190|gb|EEK48058.1| Integrase [Bacillus cereus ATCC 10876]
          Length = 345

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 114/250 (45%), Gaps = 16/250 (6%)

Query: 63  IRQLSYTEIR----AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
           I  L Y  IR     FI+ R  + + + ++   L   +S L YL++ ++   + + N+R 
Sbjct: 80  INYLQYDAIRYDGHKFITNREERGLKETTINIRLRTYRSMLNYLEREELIEYNPMDNVRL 139

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           L++   L   L E +        +L   ++  ++  R+  I+ LL   GLRI+EAL+L  
Sbjct: 140 LRQDIDLTNCLTEDEV-----KAVLAQPNQRDYVGFRDFVIINLLLDSGLRINEALNLRV 194

Query: 179 QNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           + I      + + G   K  K R VP+   V K +L+  +        +    +F    G
Sbjct: 195 EEIDFKTRFITLTGERNKNRKPRYVPISAFVAKLLLQLIEENRAHFKTD---RIFLSCFG 251

Query: 236 KPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           + L    F + ++      G+     TAH  RH++A +++ NG D  ++Q + G   + T
Sbjct: 252 ELLGANHFNKRLKYYAEKAGIKGKKVTAHVYRHTWAKNMILNGCDPFTLQKMGGWADMRT 311

Query: 295 TQIYTNVNSK 304
            + Y  ++++
Sbjct: 312 MRRYIQMDTE 321


>gi|327309842|ref|YP_004336740.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326955177|gb|AEA28873.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
          Length = 337

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 120/297 (40%), Gaps = 31/297 (10%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP +V+  LL +R             S+ T ++Y  D R FL + A +  + +  + +  
Sbjct: 43  LPRLVTAFLLGQR-------------SEHTRRAYRSDIRHFLAWCAQHHVDALRARRVHI 89

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
            +Y    A  S R  +   + ++ R L+ +     Y     +   S +  +         
Sbjct: 90  DAYVASMAAPSPRTGRPAAESTVARRLATLAGLYAYGIAEDLLDRSPLGGVHR------- 142

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           PR   +  +  L  + +           AR  A+L LL   GLRI EALS    ++  ++
Sbjct: 143 PRLGQDSTSTGLARDEVARLLAAAAADGARAHALLSLLAHNGLRIDEALSRDVDHLQTER 202

Query: 186 S--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
               LR++ KG      PL P V  A+  Y       L+     PLF    G+ ++    
Sbjct: 203 GHQVLRLRRKGGHTATAPLAPPVVHALQVY-------LDGRETGPLFMTRTGRRMDEPAA 255

Query: 244 QRYIRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            R IR+L R   LP +     HTLRH F T  L  G  LR +Q   GH    TT+ Y
Sbjct: 256 WRLIRRLARRAELPQADRINPHTLRHGFVTAALDAGVSLRDVQDSAGHADPRTTRAY 312


>gi|148544647|ref|YP_001272017.1| phage integrase family protein [Lactobacillus reuteri DSM 20016]
 gi|184154000|ref|YP_001842341.1| integrase [Lactobacillus reuteri JCM 1112]
 gi|227365077|ref|ZP_03849107.1| phage integrase/recombinase [Lactobacillus reuteri MM2-3]
 gi|325682980|ref|ZP_08162496.1| phage integrase family integrase/recombinase [Lactobacillus reuteri
           MM4-1A]
 gi|148531681|gb|ABQ83680.1| phage integrase family protein [Lactobacillus reuteri DSM 20016]
 gi|183225344|dbj|BAG25861.1| integrase [Lactobacillus reuteri JCM 1112]
 gi|227069885|gb|EEI08278.1| phage integrase/recombinase [Lactobacillus reuteri MM2-3]
 gi|324977330|gb|EGC14281.1| phage integrase family integrase/recombinase [Lactobacillus reuteri
           MM4-1A]
          Length = 322

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 119/285 (41%), Gaps = 40/285 (14%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF-ISKRRTQKIGDRSL 88
           G S  T++ Y     Q L         K  ++ +R+++  E+R + +  ++    G  ++
Sbjct: 59  GCSDRTIKYYRVTVEQLL---------KKVVRPVRRITTEEMREYLVDYQKINNCGKTTI 109

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
                 I SF  +L++     E  IL         S  R +++ +A  LV NV+     E
Sbjct: 110 DNIRRNISSFFSWLEE-----EDYILK--------SPMRRIHKIRAEKLVKNVITDEDIE 156

Query: 149 TKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            K  D     R+ AI+ LLY  G+R+ E + L   +I   +    + GKGDK R V    
Sbjct: 157 -KLRDGCSCLRDVAIIDLLYSTGIRVGELVRLNRTDINFSERECVVFGKGDKERRVYFDA 215

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN----PGVFQRYIRQLRRYLGLPLST 260
             +  ++ Y        + N   P       KP +     GV  R +RQL R L L    
Sbjct: 216 KSKVHLINYLR------SRNDDNPALFVSLDKPNDRLKISGVEIR-LRQLGRKLHLD-RI 267

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             H  R S AT  +  G  +  +Q ILGH ++ TT  Y  VN  N
Sbjct: 268 HPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVNQNN 312


>gi|294776786|ref|ZP_06742249.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294449262|gb|EFG17799.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 404

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 16/166 (9%)

Query: 143 LHTSHETKWIDARNSAILYLLYGC---GLRISEALSLTPQNIMDDQS----TLRIQGKGD 195
           LH   E K+   R  A+  +   C   GL  ++   L P++I  D +      + + K +
Sbjct: 230 LHAIMEKKFDIPRLEAVRDIFVFCCLSGLAFTDVQHLKPEHITKDINGEWWIRKAREKTN 289

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            +  +PLL  +   I+E Y   P  L  N+ LP+       P N  +   Y++++    G
Sbjct: 290 NMCHIPLL-DIPAMIIEKYRKNPVCLQKNVVLPV-------PSNQRM-NSYLKEIADVCG 340

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +    T H  RHSFA   L+N   + +I  +LGH  + TT+IY  V
Sbjct: 341 ITKKLTTHCARHSFACFALANKVSMETIAKMLGHSDIRTTKIYAKV 386


>gi|255280908|ref|ZP_05345463.1| putative tyrosine recombinase XerC [Bryantella formatexigens DSM
           14469]
 gi|255268356|gb|EET61561.1| putative tyrosine recombinase XerC [Bryantella formatexigens DSM
           14469]
          Length = 352

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/295 (22%), Positives = 124/295 (42%), Gaps = 28/295 (9%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEE----------KITIQTIRQLSYTEIRAFI- 75
           IE   S  T  SY  D R   +F  F  EE           IT+  + ++   +I  ++ 
Sbjct: 38  IEPTTSTRTRISYAYDIR---VFFQFLLEENPSLRGKEMTDITLDILDKIKPVDIEEYLE 94

Query: 76  ------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
                 S+   +  G+R+LKR +  ++ F  Y  KR++   +  L +   K  +     L
Sbjct: 95  YLKVYQSEDGLKTNGERALKRKMVALRGFYAYYFKREMIKTNPTLLVDMPKIHDKAIVRL 154

Query: 130 NEKQALTLVDNV-----LLHTSHETKW--IDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           +  +  +L+D +      L    +  W     R+ A++ LL G G+R+SE + L   ++ 
Sbjct: 155 DTDETASLLDYIEHAGDSLSGQKKVYWEKTKRRDLALVTLLLGTGIRVSECVGLDIGDVD 214

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPG 241
              + +++  KG    +V     V KA+ +Y +  C        +  LF   + K +   
Sbjct: 215 FKNNGIKVVRKGGNEMVVYFGDEVEKALRDYLEERCGITPVAGSENALFLSTQRKRIGVQ 274

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
             +  +++  R +      T H LR ++ T L     D+  +  +LGH  ++TT+
Sbjct: 275 AVENLVKKYARQITTTKKITPHKLRSTYGTSLYQETNDIYLVADVLGHKDVNTTK 329


>gi|223369848|gb|ACM88793.1| integrase [uncultured bacterium]
          Length = 163

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 43/69 (62%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R   L P   QR +++     G+    + HTLRHSFATHLL    D+R++Q +LGH  +
Sbjct: 94  VRRHYLYPERLQRALKRAVGQAGIAKHVSVHTLRHSFATHLLQPNTDIRTVQELLGHSDV 153

Query: 293 STTQIYTNV 301
           STT IYT+V
Sbjct: 154 STTMIYTHV 162


>gi|89098245|ref|ZP_01171130.1| integrase-recombinase [Bacillus sp. NRRL B-14911]
 gi|89087102|gb|EAR66218.1| integrase-recombinase [Bacillus sp. NRRL B-14911]
          Length = 374

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 131/309 (42%), Gaps = 44/309 (14%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-KITIQTIRQLSYTEIRAFISKRRTQ 81
           Q+L  +   S  T++ Y+ +  QF+  L  Y+ E  I I+TIR  S  +  A    RR Q
Sbjct: 53  QHLNHKHDKSSRTIKEYKLEINQFVEQLLKYSLEINIDIETIRSSSLFKSLAPRHIRRYQ 112

Query: 82  K--------------IGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSL 125
           +                  +L R  + + +FLK+L + K   +     L M ++K  +  
Sbjct: 113 EWLATKSPYVQKKGSYAPATLARKTTILNNFLKFLYESKYIEDPLHQGLLMASIKNEDRP 172

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI---- 181
            R L   + + L++       H  K       AI+++L   GLR  E  +L  ++I    
Sbjct: 173 NRDLGPAEVIQLLN-------HFRKEKHPIAFAIIHILTTTGLRNEEFCNLKVKDIQYDS 225

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL------NIQLPLFRGIRG 235
           ++D   L++ GKG+K R VPL    R+  L+   +  +   L      +   PLF    G
Sbjct: 226 INDGHFLQVLGKGNKSREVPL----REKTLDSIHMFRYARGLEEIAAADKDSPLFTTNTG 281

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTT------AHTLRHSFATHLLSNGGDLRSIQSILGH 289
              +P    +Y+    +   LP           HTLRHSFA     +  D+  I   LGH
Sbjct: 282 SAFSPSYLSQYLTNTIKQSQLPFLDGRSSLIGPHTLRHSFAIISYLSKVDIYQIMRSLGH 341

Query: 290 FRLSTTQIY 298
            ++ TT IY
Sbjct: 342 EKIETTVIY 350


>gi|291545712|emb|CBL18820.1| Site-specific recombinase XerD [Ruminococcus sp. SR1/5]
          Length = 322

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 117/277 (42%), Gaps = 24/277 (8%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSL 88
           G S+ T+Q Y+      L  +           ++R+++  EIR ++++ ++  K  + ++
Sbjct: 59  GCSERTIQYYKVTVEHLLSHIE---------TSVRKITTEEIRTYLAEYQKNNKCSNVTV 109

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
                 I SF  +L++     +S +  +  +K    +   + ++    L DN        
Sbjct: 110 DNIRRNISSFFSWLEEEDYILKSPMKRIHKIKTKTVVKSVITDEGIERLRDNCK------ 163

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
               + R+ AI+ LLY  G+R+ E ++L   +I  +     + GKGDK R V      + 
Sbjct: 164 ----EIRDLAIIDLLYSTGIRVGELVNLNVDDIDLEGRECIVYGKGDKERRVYFDAKAKV 219

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            + EY  +     N +           +    GV  R +R+L + + L      H  R +
Sbjct: 220 HLKEY--IAHRKDNNSALFVTLDAPHDRLKISGVEIR-LRELGKRIDLE-RIHPHKFRRT 275

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            AT  +  G  +  +Q ILGH ++ TT  Y  VN  N
Sbjct: 276 MATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVNQNN 312


>gi|257465870|ref|ZP_05630181.1| integrase/recombinase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917027|ref|ZP_07913267.1| tyrosine recombinase xerD-like protein [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313690902|gb|EFS27737.1| tyrosine recombinase xerD-like protein [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 262

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 121/268 (45%), Gaps = 36/268 (13%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E +  +Q ++ +LE++RGLS+ +L++ + D  QFL ++  Y + ++T+ T++   +    
Sbjct: 3   EFILWKQKYIHHLELQRGLSQNSLRAIQKDLEQFLNYMEEYQDGELTVLTLKSYFF---- 58

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE- 131
                   +K    +++R +S IK FL++LK+  I  E   L    ++K         + 
Sbjct: 59  -----HLQEKHASNTIQRKISSIKVFLRFLKEENIVQEDFSLYFTKVRKEEDTILFFEKD 113

Query: 132 --KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
             +Q   + +N L            R+ AI  LLY  G++  E LSLT   I  ++  + 
Sbjct: 114 VWEQFRRIFENNL------------RDKAIFELLYSTGMKPKEFLSLTYLQIQWEKQEIY 161

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
              K +  R V      ++A+  Y   C       ++         K L   +F++Y  +
Sbjct: 162 FFQKKES-RTVFFSHRAKEALWNY---CE---EKGMKEGRIWDFSEKTLR-NIFKKYREK 213

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNG 277
           +    GL  + T ++ RH+FA  LL  G
Sbjct: 214 IS---GLE-NMTIYSFRHTFAITLLRAG 237


>gi|158522719|ref|YP_001530589.1| integrase family protein [Desulfococcus oleovorans Hxd3]
 gi|158511545|gb|ABW68512.1| integrase family protein [Desulfococcus oleovorans Hxd3]
          Length = 210

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 7/175 (4%)

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QG 192
           T+ D  +   S + K    R   ++ L+   GLR+ E  +L   ++        +   +G
Sbjct: 29  TVKDKAVADQSKKNK-TGIREWMVIDLITSTGLRVEEVSNLRCGDLKAGYGQCEVFVSRG 87

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG + R V +  S++  + +Y          +     LF G RG P      Q+ +++  
Sbjct: 88  KGGRSRTVEIPQSLKTHLNQYLKWKKEQQERIGPSNYLFVGQRG-PWTAQAIQQLVKKYL 146

Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           + LGL     + H LRHS+A  L     DLR++Q  LGH  + TTQIY +V  ++
Sbjct: 147 KKLGLYERGKSVHALRHSYAVQLYRKKRDLRAVQKQLGHASIQTTQIYADVTKED 201


>gi|291485998|dbj|BAI87073.1| hypothetical protein BSNT_05256 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 329

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 91/212 (42%), Gaps = 12/212 (5%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L GIKS L  + KR +  E+    +  L+      + L + Q       +   T     +
Sbjct: 102 LGGIKSILSRMTKRGLINENPAKRVTKLRVDEKTIKMLTDSQVRRFFKMIDKDT-----F 156

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRK 208
              R+     +   CGLR +E   L P++I  D   + + G   K  K R+VP+   V +
Sbjct: 157 PGFRDYVAFLIALKCGLRSNELEGLKPEDIDFDNLVIMLPGAVNKNRKNRMVPMTEQVAE 216

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLR 266
            + +   L            +F    G+ +     ++   +      L      + H+LR
Sbjct: 217 ELRQL--LTEMTEYFGTFTHVFVNQYGEKIAKDHLRKRAAKYGEMADLKKECRPSLHSLR 274

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           H+FA + L NG D+RS+Q I+GH  L++T+IY
Sbjct: 275 HTFAINYLRNGSDIRSLQKIMGHADLASTEIY 306


>gi|94972399|ref|YP_595617.1| integrase/recombinase [Lawsonia intracellularis PHE/MN1-00]
 gi|94731936|emb|CAJ53953.1| similar to integrase/recombinase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 361

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 108/242 (44%), Gaps = 21/242 (8%)

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT---ESNILNMRNLKKSN--- 123
           ++ AFI  R+       ++   +  +KSF ++L    I T    + +   RN  K N   
Sbjct: 112 DVDAFIRYRQLNGSKPATINTIIGALKSFFRHLVDAGILTLNPTAFLKKRRNDTKQNLPG 171

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            L  +L+E +   L D ++   +        R+ A++ +L+  G+R  EA+ L   +I+ 
Sbjct: 172 HLSHSLSESELQRLFDGMIEQGA------SLRDQALMQVLFLTGIRAEEAVRLKWSHIVT 225

Query: 184 DQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIRGKP--- 237
            QS   L + GKG K R V L       I EY  L   +L L +   PLF  +R +P   
Sbjct: 226 WQSRWYLDVFGKGSKRRRVYLPIQALTVIQEYGKLLGIELGLASNSKPLFAHLR-RPNEH 284

Query: 238 -LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
               G++    +  +R LG     + H  RHS  T L   G  L SI+++ GH  + TT 
Sbjct: 285 ISRHGLYVLVKKWCKRLLGRT-DVSPHWFRHSCFTQLAHKGASLESIKALAGHESVETTM 343

Query: 297 IY 298
            Y
Sbjct: 344 QY 345


>gi|289192574|ref|YP_003458515.1| integrase family protein [Methanocaldococcus sp. FS406-22]
 gi|288939024|gb|ADC69779.1| integrase family protein [Methanocaldococcus sp. FS406-22]
          Length = 326

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 132/320 (41%), Gaps = 30/320 (9%)

Query: 1   MEGNNL---------PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA 51
           M+GN L         P+    E   E + W+     ER    +   +   D  +  +FL 
Sbjct: 1   MKGNGLNFKNLLLVKPKREKVEESPEIKKWVDRFREEREFDGIKESTIRSDILRLRVFLD 60

Query: 52  F-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK---KRKI 107
           F Y     T +T+    +     ++ K R  K+   S  +    +K F + ++    R+ 
Sbjct: 61  FVYNRLNKTPETMTNADFVRFFNYLEKER--KVSRSSQDKYFKLLKVFYRLMRLNNFREF 118

Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
             ES     R   K         +  AL L+   ++ ++     +  RN  I+ LL+  G
Sbjct: 119 AEESK--ERRRFSKFEVKHYDAIDANALNLILEKMMESNSR---MSIRNCLIVRLLWDTG 173

Query: 168 LRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
            RISE L+L  ++   D+ T RI   K  + R+V       +A+  Y    P     N  
Sbjct: 174 ARISEVLNLKYKDCDFDEGTFRITNTKTHEERVVVCSSDTLEALRWYVQFNP---RQNSD 230

Query: 227 LPLFRGIRGKPLNPG----VFQRYIRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDL 280
             +F+  +G+ ++      VF+R + +L++   +P +     H+LRH  A  LL  G  +
Sbjct: 231 DYIFQTPKGERVSKDTIYKVFKRAVDELKKEGKIPKNKRIVLHSLRHGRAVDLLDKGVPI 290

Query: 281 RSIQSILGHFRLSTTQIYTN 300
             ++  LGH  L TT  Y++
Sbjct: 291 DIVKEYLGHRSLDTTLYYSH 310


>gi|126664399|ref|ZP_01735383.1| putative transcriptional regulator, Fis family protein
           [Marinobacter sp. ELB17]
 gi|126667639|ref|ZP_01738608.1| putative transcriptional regulator, Fis family protein
           [Marinobacter sp. ELB17]
 gi|126627908|gb|EAZ98536.1| putative transcriptional regulator, Fis family protein
           [Marinobacter sp. ELB17]
 gi|126630725|gb|EBA01339.1| putative transcriptional regulator, Fis family protein
           [Marinobacter sp. ELB17]
          Length = 301

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 104/222 (46%), Gaps = 19/222 (8%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++K   +G++ F K++  +  T     +++    +  +LP  L + +    ++ V+ HT 
Sbjct: 71  TVKVDRNGLQFFYKHVLNKTWT----WVDIVKPPQKKTLPDILTQAE----IERVINHTR 122

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS 205
                 + R    + + Y  GLR+ EAL+L   +I   +  + ++ GKG K R+V L P+
Sbjct: 123 ------ELRYQTFILVAYSMGLRLGEALNLKVGDIDGQRMKVHVRLGKGQKDRVVTL-PT 175

Query: 206 VRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           + +  L YY      P  L    + P  R +    ++    Q+  + + +   +    T 
Sbjct: 176 ITRTALRYYWSTHRHPQFLFPRGRTPEERKLAIAVMDRSGLQKSFKAILKSCNIHKDITP 235

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           H+LRH +  HL ++   LR+IQ  +GH    TT IYT +  +
Sbjct: 236 HSLRHCYGAHLTASNLHLRAIQFEMGHACPKTTAIYTQLTDE 277


>gi|291294978|ref|YP_003506376.1| integrase family protein [Meiothermus ruber DSM 1279]
 gi|290469937|gb|ADD27356.1| integrase family protein [Meiothermus ruber DSM 1279]
          Length = 251

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 10/153 (6%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYD 215
           +L  L+  G R+SE + L  Q++  D     +   + K D +R VP+LP++ + +     
Sbjct: 95  MLKTLFYTGCRVSEFVFLRAQDLHLDGEAPHLYVHKAKKDSVRYVPILPALAQELR---- 150

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
                L    +  LF   R +  +P   Q+ I+   +  GL      H LRHS A  LL 
Sbjct: 151 ---VHLAGRTRGYLFESNRHQRYSPRAVQKLIQAAAKEAGLERRVYPHLLRHSVAQILLD 207

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            G  L  +Q  LGH  L TTQIY   + +  G+
Sbjct: 208 RGMPLEQLQKFLGHRDLKTTQIYAESSLEQVGE 240


>gi|224543618|ref|ZP_03684157.1| hypothetical protein CATMIT_02828 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523444|gb|EEF92549.1| hypothetical protein CATMIT_02828 [Catenibacterium mitsuokai DSM
           15897]
          Length = 340

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 138/310 (44%), Gaps = 33/310 (10%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+ +++ +I  +  ++    ++ + EIE G SK T Q Y    +  L+ L   T+   T 
Sbjct: 49  MQEDSIQDIFEYSNMELIDKFIASKEIE-GCSKRTTQYY----KSTLVMLENRTDIHFTH 103

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            T   L  T +  +       K+   +++R+LS   SF  +L++     +S +  +  +K
Sbjct: 104 MTTDHLR-TYLTDYQKINNCSKVSIDNIRRNLS---SFFSWLEEENYILKSPMKRIHKIK 159

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               +   L+++    L D+            + R+ AI+ LL   G+R+ E +++  ++
Sbjct: 160 TDKVIKETLSDESLECLRDSC----------DNLRDLAIIDLLASTGMRVGELVNINIED 209

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAI-LEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           I  +     + GKG+K R  P+    R  I L+ Y     D N  + + L      KP N
Sbjct: 210 IDFENRECVVFGKGNKER--PVYFDARTKIHLKNYLKSRTDDNPALFVSL-----DKPFN 262

Query: 240 ----PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                GV  R +R L R LG+      H  R + AT  +  G  +  +QS+LGH ++ TT
Sbjct: 263 RLQISGVEIR-LRNLGRRLGIH-RVHPHKFRRTVATRAIDKGMPIEQVQSLLGHSQIDTT 320

Query: 296 QIYTNVNSKN 305
             Y  VN  N
Sbjct: 321 MHYAMVNQNN 330


>gi|291295938|ref|YP_003507336.1| integrase family protein [Meiothermus ruber DSM 1279]
 gi|290470897|gb|ADD28316.1| integrase family protein [Meiothermus ruber DSM 1279]
          Length = 339

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 131/289 (45%), Gaps = 27/289 (9%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR----------T 80
           LS  TL++Y    R +L   A+   E  +++ ++  S  ++  +I+  +           
Sbjct: 48  LSPRTLENYRLAVRDYL---AWAWSETQSLEILKA-SSDDLDRYIAHLQLYGGNLEPGER 103

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q++   S+   L+G+++F + L+         + + R+         AL E     L+D+
Sbjct: 104 QRLKPGSIATYLAGVRAFYRALEWANAAKLPQVHSPRDPTPPEERRPALPEDLYKKLLDH 163

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRI 199
            L     E +    R+   + L+   GLRISE ++L+  ++   +  L ++ GKG K R 
Sbjct: 164 -LSGADPEHR----RDRLAVRLMAEAGLRISEVINLSLDDLSLAERLLLVRAGKGGKQRT 218

Query: 200 VPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           VPL  S+ + I ++  L      P + +L I L   R   G+ +     +R + Q  R L
Sbjct: 219 VPLSKSLAQEIQDWLKLRLAHAAPNEQSLLINLG-GRKAYGRAMTDKSLRRILNQHYRDL 277

Query: 255 GLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           G P     AH LRH+  T +     DL +   +LGH  ++T+ IY  ++
Sbjct: 278 GFPKRYYGAHMLRHTAGTRIYKKSRDLHATARLLGHANVNTSAIYAKMD 326


>gi|301166099|emb|CBW25674.1| putative integrase [Bacteriovorax marinus SJ]
          Length = 399

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 13/142 (9%)

Query: 166 CGLRISEALSLTPQNIMDDQS----TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           CGL   + +  T  N++ ++S     +R   K  + R VP+   VR       D+    L
Sbjct: 252 CGL-CWDRVDFTTNNLVINRSLTRDGIRNTTKTHRGRYVPMNTIVR-------DILQKRL 303

Query: 222 NLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
              I   +F    GKPL    V QR+ ++ +R  GL      H LRH+FA+H + NGG++
Sbjct: 304 RTRISKFVFSTQTGKPLPYDHVTQRHFKKSQREAGLENIIRFHDLRHTFASHFMMNGGNI 363

Query: 281 RSIQSILGHFRLSTTQIYTNVN 302
            ++Q +LGH  + TT IY +++
Sbjct: 364 YTLQKLLGHTDIKTTMIYAHLD 385


>gi|145590019|ref|YP_001156616.1| phage integrase family protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145048425|gb|ABP35052.1| phage integrase family protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 193

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 21/186 (11%)

Query: 132 KQALTLVDN----VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           KQA TL       VL +T+  T+    RN A+L   +  G+R+ E  SL   +++D +  
Sbjct: 3   KQAKTLTQQELRRVLDYTA--TRKHSVRNRALLMTTHLSGMRVGEVASLRNSDVLDAEGN 60

Query: 188 LR-------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           +R        Q KG++ R+V +   +RK  LE Y     +  +N  L  F     K  + 
Sbjct: 61  IRNEIRLSAEQTKGNEARVVFVSDKLRKE-LELYTHLMRNAYVNPALKFF--YSQKRTSD 117

Query: 241 GVFQRYIRQLRRYL----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           G     + Q   YL    G+    ++H+ R +F T+L + G  +R + S+ GH  +STTQ
Sbjct: 118 GFTANTLTQFFHYLYKRAGID-GASSHSGRRTFITNLATKGVGVRVLMSLAGHKNISTTQ 176

Query: 297 IYTNVN 302
            Y +VN
Sbjct: 177 AYIDVN 182


>gi|89147582|gb|ABD62650.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 40/61 (65%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           G+ Q  +++     G+      H+LRHSFATHLL N  D+R++Q +LGH  +STT IYT+
Sbjct: 102 GILQNALKRAVDAAGIVKRANCHSLRHSFATHLLGNSYDIRTVQELLGHKDVSTTMIYTH 161

Query: 301 V 301
           V
Sbjct: 162 V 162


>gi|315651157|ref|ZP_07904189.1| phage integrase family site-specific recombinase [Eubacterium
           saburreum DSM 3986]
 gi|315486622|gb|EFU76972.1| phage integrase family site-specific recombinase [Eubacterium
           saburreum DSM 3986]
          Length = 351

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 124/290 (42%), Gaps = 39/290 (13%)

Query: 38  SYECDTRQFLIFL---------AFYTEEKITIQTIRQLSYTEIRAFIS-----KRRTQKI 83
           +Y  D + FL FL          +     I +  +  LS T+I  F+      +   +KI
Sbjct: 47  AYAYDIKVFLEFLLNENPSIKNTYSKITDIPLSVLENLSVTDIEEFMEYLKYRESEGKKI 106

Query: 84  GDR--SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL-VDN 140
            ++  ++KR +S +KS  KY  + +   E       N+ +   LP+ L+ K+ + L +D 
Sbjct: 107 SNKENAIKRKVSTLKSVFKYFYRVEKINE-------NIMERVQLPK-LHSKEIIRLDIDE 158

Query: 141 VLLHTSHETKW-------------IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           V +      K                 R+ A+L LL G G+R+SE + L   ++    + 
Sbjct: 159 VAMMIDEAEKGEGLSDRQKAYHEKTKVRDVALLSLLLGTGIRVSECVGLDISDVDFKNNG 218

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRY 246
           + I  KG K   V     V +A+  Y D     L  +  +   F  ++ K ++    +  
Sbjct: 219 ILIHRKGGKEVTVYFSDEVSEALQNYLDERVLILEESGHEGAFFLSMQNKRMSVRSVENL 278

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           +++  R +      T H LR ++ T+L    GD+  +  +LGH  ++TT+
Sbjct: 279 VKKYARIISPLKKITPHKLRSTYGTNLYKETGDIYLVADVLGHSDVNTTK 328


>gi|255012874|ref|ZP_05285000.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 69

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 46/65 (70%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+  + + HT RHSFATHLL  G +LR+IQ +LGH +++TT+IYT+++ +     ++E +
Sbjct: 3   GIHKNVSPHTFRHSFATHLLEGGANLRAIQEMLGHEKITTTEIYTHIDREFLRKEILEHH 62

Query: 315 DQTHP 319
            ++ P
Sbjct: 63  PRSRP 67


>gi|119491191|ref|ZP_01623288.1| recombinase [Lyngbya sp. PCC 8106]
 gi|119453532|gb|EAW34693.1| recombinase [Lyngbya sp. PCC 8106]
          Length = 345

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 130/286 (45%), Gaps = 28/286 (9%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           TL +Y+   RQ + FL +  + ++    I +    + R ++  ++  K    +LK  LS 
Sbjct: 42  TLITYK---RQLIQFLDWCDQRQLHPAEINKNDIKKYRRWMIDKKGFKPATIALK--LSV 96

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           ++ F +   ++ + T +    ++  K+ +     +   +A + V+ +      +     A
Sbjct: 97  VRRFYQAAMEKGLLTVNPATGVKAPKEKHDPAEKITYLEA-SEVEQLFATIPDDGSLKSA 155

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMD-----DQSTLRIQGKGDKIRIVPLLPSVRKA 209
           R+ A+L +L   G R  E   L   NI D         +R++GK + IRIVPL P + + 
Sbjct: 156 RDKALLAILTLEGPRTVE---LHRANICDIVRQGKNWGIRVEGKRN-IRIVPLTPEIAQL 211

Query: 210 ILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR----------QLRRYLGLPL 258
           +  Y +     +  L    PLF  +  +     + +R IR          QL++  G  L
Sbjct: 212 LRVYLERREAAEGQLKPSSPLFVAVGNRAGGKRISRRGIRLIVDGYLKEAQLKQTPGRTL 271

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           ST  H+LRH+  T  L +G +LR +Q +LGH    TT IY +V  +
Sbjct: 272 ST--HSLRHTAGTLALRSGAELRQVQDLLGHADPRTTCIYAHVGDR 315


>gi|167946419|ref|ZP_02533493.1| tyrosine recombinase XerD [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 71

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 40/55 (72%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           I++  R   +    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V
Sbjct: 1   IKRHARQADIDKPISPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHV 55


>gi|319425166|gb|ADV53240.1| integrase family protein [Shewanella putrefaciens 200]
          Length = 311

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 109/242 (45%), Gaps = 28/242 (11%)

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY---LKKRKITTESNILNMRNLKKSNSLP 126
           +IRA ++     +   RS+ R++  IK+ +K    + K  ++  +N+  +  +K      
Sbjct: 54  QIRAMMTH---AQWSARSINRAMIAIKNIVKVAALMNKADLSQVANLQTINQVKHGEHQG 110

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             L+ +Q    V  VL +   +      RN  I  L  G GLR SE  +L   +   +  
Sbjct: 111 TPLSTEQ----VTAVLDYCKTQKGTFATRNLLIFSLFLGTGLRRSELSALMLSDYDANLH 166

Query: 187 TLRIQ-GKGDKIRIVPLLPSVRKAILEY---------YDLCPFDLNLNIQLPLFRGIRGK 236
           TL +  GKG+K R + L   V + +L +         Y +C   L   ++L        +
Sbjct: 167 TLTVAAGKGNKSRTLFLPEWVEQNLLAWLKLRQRQQGYLVCKSTLTGKLKL-------SE 219

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           P +P    R +++    LG+  + + H LR +F T LL    D+ +++ + GH  +STT 
Sbjct: 220 PTSPTALYRLVKETLYELGVD-NVSPHDLRRTFITRLLEQNVDINTVRQMAGHADISTTT 278

Query: 297 IY 298
           IY
Sbjct: 279 IY 280


>gi|324323949|gb|ADY24992.1| integrase family protein [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 296

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 104/237 (43%), Gaps = 40/237 (16%)

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLV 138
            +K+   ++ + ++ IK +  YL    +    +ILN    +K+    P A   +    L 
Sbjct: 63  VEKLAPATINKRVAAIKVYWSYL----VQAGYSILNPTIKVKRKRISPLAQAPRWLSRLE 118

Query: 139 DNVLLHTSHETK--WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGD 195
            +  LH  H+ K  W   RN AI+ ++   GLRISE +SL  ++I   + T+  I GKG 
Sbjct: 119 QDKFLHQIHKEKHVWKKTRNLAIVQIMLQAGLRISEVVSLDIEDIDLKRRTITVISGKGG 178

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF------QRYIRQ 249
           K RI  +                 +L L   +  + G+RG+     +F       R  RQ
Sbjct: 179 KNRIALM-----------------NLELMKTVENWLGVRGELSQVALFLSARHSTRITRQ 221

Query: 250 LRRYL--------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              YL        GL    +AH+LRHSF  +L+     L+ I  + GH  L TT+ Y
Sbjct: 222 GIHYLIKNYLHSIGLT-DYSAHSLRHSFCRNLVDANQPLQIIAQLAGHESLETTRRY 277


>gi|317495237|ref|ZP_07953607.1| phage integrase [Gemella moribillum M424]
 gi|316914659|gb|EFV36135.1| phage integrase [Gemella moribillum M424]
          Length = 350

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 5/152 (3%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
           AR+ AIL L    G+R++E  +L  ++I    S + +  KG+K+  V +  S  + I EY
Sbjct: 192 ARDLAILTLFLKSGIRVNELANLKVKDIDFRNSEINVIRKGNKVDTVIITKSALERISEY 251

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
           +   PF L     + + +   G  L+    Q+ + +      +P+S   H LRHS+ T L
Sbjct: 252 FQSLPFSLKREDFVFVTKNKTG--LSIRAIQKLVMKYTDAFNVPMS--PHKLRHSYGTKL 307

Query: 274 -LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            L   G++  I + +GH    T+ +Y N + K
Sbjct: 308 ALKTNGNIPIIMTQMGHSNSDTSMLYINESKK 339


>gi|300723961|ref|YP_003713274.1| integrase [Xenorhabdus nematophila ATCC 19061]
 gi|297630491|emb|CBJ91156.1| Integrase [Xenorhabdus nematophila ATCC 19061]
          Length = 337

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 20/139 (14%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           L    G R  EA  L  +N++ ++ T   + K  K R +P+   V K +        FD+
Sbjct: 187 LCLNTGARWGEANKLRAENMLHNRVTF-TETKNGKHRTIPISDEVMKVVKTKSSGALFDV 245

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
           N N    + + ++                   L LP     H LRH+FA H + NGG++ 
Sbjct: 246 NYNSYANILKKVK-------------------LDLPQGQAVHVLRHTFAAHFMMNGGNIL 286

Query: 282 SIQSILGHFRLSTTQIYTN 300
           ++Q I+GH  +  T  Y +
Sbjct: 287 TLQKIMGHANIQQTMAYAH 305


>gi|255690723|ref|ZP_05414398.1| putative Na+/H+ antiporter NhaA [Bacteroides finegoldii DSM 17565]
 gi|260623758|gb|EEX46629.1| putative Na+/H+ antiporter NhaA [Bacteroides finegoldii DSM 17565]
          Length = 536

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 110/249 (44%), Gaps = 24/249 (9%)

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSN 123
           L+  +I  +I      K+   +LK  L  I+ +L+Y  ++   IT     L    +    
Sbjct: 284 LTLEDIDKYIEYYTINKVQRNTLKEYLCCIRVYLRYAVEKGWCITDLDKALITPKVYSEE 343

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           +LP  L   +   L+  V   T        +R+ AI  LL   GLR SE  +L   +I  
Sbjct: 344 NLPSFLPWNKVQKLLQTVKEQTGKSA----SRDYAIFMLLAMYGLRCSEVANLKISDIDW 399

Query: 184 DQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY------DLCPFDLNLNIQLPLFRGIRGK 236
            +  + I+  K  + +++PLL +V +AI+ Y       D+    L      P+ R I   
Sbjct: 400 RKEQVYIKRAKNCRPQVLPLLHNVGEAIIAYLKQGRPNDIGSDSLFFCTPAPI-RPISCT 458

Query: 237 PLNPGVFQRYIRQLR---RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            +   V+ RY++      R+ G       H LRHS AT L++ G  L+ +  +LGH  + 
Sbjct: 459 AIASVVY-RYLKSSEMDVRHKG------PHCLRHSHATFLINEGQTLKDVGDLLGHKSME 511

Query: 294 TTQIYTNVN 302
            T+IY  V+
Sbjct: 512 ATRIYAKVD 520


>gi|319641219|ref|ZP_07995919.1| integrase [Bacteroides sp. 3_1_40A]
 gi|124107947|gb|ABM90616.1| integrase [Bacteroides uniformis]
 gi|145308091|gb|AAR05648.2| integrase [Bacteroides uniformis]
 gi|317387152|gb|EFV68031.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 377

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 19/148 (12%)

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSVRKAILEYYDLCPFDLN 222
           CGLRIS+ + L  +++  D+   R+     K +    +PL P   K +    D  P D  
Sbjct: 234 CGLRISDIIKLQWKDVFVDRGQYRLSVSMQKTKEPIYLPLSPEALKWMPARGDKTPDDHV 293

Query: 223 LNIQLPLFRGIRGKPLN--PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
            ++  P    I  KP     G+ +R+              T HT RH+FAT +L+ G DL
Sbjct: 294 FDLPSPAMVNILIKPWAKAAGINKRF--------------TFHTARHTFATMMLTLGADL 339

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            +   +LGH  +  TQ+Y  + ++   D
Sbjct: 340 YTTSKLLGHADVKMTQVYAKIINQKKDD 367


>gi|325520789|gb|EGC99801.1| site-specific tyrosine recombinase XerD [Burkholderia sp. TJI49]
          Length = 70

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 42/59 (71%), Gaps = 4/59 (6%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++ Q HP
Sbjct: 14  SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LRTLHAQHHP 68


>gi|188526798|gb|ACD62280.1| IntI1 integrase [uncultured bacterium]
          Length = 117

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 62/119 (52%), Gaps = 6/119 (5%)

Query: 184 DQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           D  T+ + +GKG K R + +LP        +     F  + +   P    +R   +    
Sbjct: 4   DHGTIIVREGKGSKDRAL-MLPDGH----SWPWFWVFAQHTHSTDPRSGVVRRHHMYDQT 58

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 59  FQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 117


>gi|30908750|gb|AAP37607.1| IntI [uncultured bacterium]
          Length = 161

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            + HTLRHSFATHLL  G D+R+IQ +LGH  L+TT IYT+V
Sbjct: 120 ASCHTLRHSFATHLLQTGSDIRTIQDLLGHKELTTTMIYTHV 161


>gi|89147480|gb|ABD62600.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 42/60 (70%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           V Q+ + +  +  G+    + HTLRHSFATHLL +G D+R+IQ++LGH  + TT IYT+V
Sbjct: 103 VLQKAMLRAVKESGILKKASVHTLRHSFATHLLQDGYDIRTIQALLGHKSVRTTMIYTHV 162


>gi|255008144|ref|ZP_05280270.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           3_1_12]
          Length = 359

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 61/139 (43%), Gaps = 17/139 (12%)

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSVRKAILEYYDLCPFDLN 222
           CGLRIS+ + L  +N+  D    R+     K +    +PL     K + E  D    D  
Sbjct: 218 CGLRISDIVGLKWKNVFVDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPEREDKAADDPV 277

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
            N+              P    +Y+R      G+    T HT RH+FAT +L+ G DL +
Sbjct: 278 FNL--------------PSNINQYLRPWAEAAGITKRFTFHTARHTFATMMLTLGADLYT 323

Query: 283 IQSILGHFRLSTTQIYTNV 301
           +  +LGH  +  TQ+Y  +
Sbjct: 324 VSKLLGHTSVRMTQVYAKI 342


>gi|288870073|ref|ZP_06112814.2| integrase/recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
 gi|288868544|gb|EFD00843.1| integrase/recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
          Length = 376

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 77/164 (46%), Gaps = 9/164 (5%)

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
           T   + R+ A++  LY  G+R+SE +SL   +I   +  L + GKG K R   L    + 
Sbjct: 206 TSCSELRDRALVEFLYSTGVRVSELVSLNVGDIEMGKQELIVYGKGSKERKTYLTDGAKF 265

Query: 209 AILEYYDLCPFDLNLNIQ----LPLFRGI---RGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            +  Y      +  + ++     PLF  +    G+    GV Q  +RQL R  G+     
Sbjct: 266 YLRRYLRTRCENEGMTMEELQGRPLFATLDRPHGRLTVAGV-QYMLRQLGRRAGVE-GVH 323

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            H  R + AT LLS G  +  ++  LGH +L TT IY  V +++
Sbjct: 324 PHRFRRTIATDLLSRGMPIEQVKEFLGHEKLDTTMIYCTVKTES 367


>gi|91215321|ref|ZP_01252293.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755]
 gi|91186926|gb|EAS73297.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755]
          Length = 124

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 42/75 (56%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LF G RG   +       +++      + +  T H LRHSFATHLL  G DLR IQ +LG
Sbjct: 39  LFEGQRGGKYSGQAVVNVVKKAAFKAKIRIPVTPHMLRHSFATHLLEAGVDLRQIQVLLG 98

Query: 289 HFRLSTTQIYTNVNS 303
           H    TT+IYT+V +
Sbjct: 99  HQSTKTTEIYTHVAT 113


>gi|126668752|ref|ZP_01739701.1| putative integrase [Marinobacter sp. ELB17]
 gi|126626789|gb|EAZ97437.1| putative integrase [Marinobacter sp. ELB17]
          Length = 332

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 124/294 (42%), Gaps = 22/294 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  L  +R +S  T+ SY    R  L+F      +  +   +  +  T + AF+     
Sbjct: 14  FIDRLMRQRHVSANTIASYRDTFRLPLVFTQKQLGKPPSSLNLEDIDATLVSAFLEDLEV 73

Query: 81  QK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + I  R+    L+ I+SF +++   +    + I      ++  ++P    +++ +  + 
Sbjct: 74  NRSISARTRNLRLTAIRSFFRFVSYEEPAHSAQI------QRVLAVPDKRQDRRIVHFLA 127

Query: 140 ----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQGKG 194
                 LL    ++ WI  R+  +L L    GLR+SE   L   + ++   + +   GKG
Sbjct: 128 RPEIEALLAAPDQSTWIGRRDHTLLLLAVQTGLRLSELTGLDRASVVLGSGAHVHCLGKG 187

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI---RQLR 251
            K R  PL  +V +AI E+    P   +      LF   +G+ L+    Q  +     + 
Sbjct: 188 RKERCTPLTRTVSRAIQEWLKE-PARCDSKA---LFSTRQGRRLSADAVQYLVANYADIT 243

Query: 252 RYLGLPLS---TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           R     L     T H LRHS A  LL  G D   I   LGH  + TTQ+Y + +
Sbjct: 244 RQHCPSLKQKRITPHVLRHSAAMELLQAGVDCSVIALWLGHESVETTQVYLHAH 297


>gi|218129441|ref|ZP_03458245.1| hypothetical protein BACEGG_01018 [Bacteroides eggerthii DSM 20697]
 gi|254881363|ref|ZP_05254073.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|313145864|ref|ZP_07808057.1| integrase [Bacteroides fragilis 3_1_12]
 gi|317476187|ref|ZP_07935438.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|217988171|gb|EEC54494.1| hypothetical protein BACEGG_01018 [Bacteroides eggerthii DSM 20697]
 gi|254834156|gb|EET14465.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|313134631|gb|EFR51991.1| integrase [Bacteroides fragilis 3_1_12]
 gi|316907598|gb|EFV29301.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 376

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 61/139 (43%), Gaps = 17/139 (12%)

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSVRKAILEYYDLCPFDLN 222
           CGLRIS+ + L  +N+  D    R+     K +    +PL     K + E  D    D  
Sbjct: 235 CGLRISDIVGLKWKNVFVDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPEREDKAADDPV 294

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
            N+              P    +Y+R      G+    T HT RH+FAT +L+ G DL +
Sbjct: 295 FNL--------------PSNINQYLRPWAEAAGITKRFTFHTARHTFATMMLTLGADLYT 340

Query: 283 IQSILGHFRLSTTQIYTNV 301
           +  +LGH  +  TQ+Y  +
Sbjct: 341 VSKLLGHTSVRMTQVYAKI 359


>gi|198276324|ref|ZP_03208855.1| hypothetical protein BACPLE_02519 [Bacteroides plebeius DSM 17135]
 gi|198270766|gb|EDY95036.1| hypothetical protein BACPLE_02519 [Bacteroides plebeius DSM 17135]
          Length = 376

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 61/139 (43%), Gaps = 17/139 (12%)

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSVRKAILEYYDLCPFDLN 222
           CGLRIS+ + L  +N+  D    R+     K +    +PL     K + E  D    D  
Sbjct: 235 CGLRISDIVGLKWKNVFVDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPEREDKAADDPV 294

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
            N+              P    +Y+R      G+    T HT RH+FAT +L+ G DL +
Sbjct: 295 FNL--------------PSNINQYLRPWAEAAGITKRFTFHTARHTFATMMLTLGADLYT 340

Query: 283 IQSILGHFRLSTTQIYTNV 301
           +  +LGH  +  TQ+Y  +
Sbjct: 341 VSKLLGHTSVRMTQVYAKI 359


>gi|89147574|gb|ABD62646.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 40/61 (65%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           G+ Q  +++     G+      H+LRHSFATHLLS G D+R++Q  LGH  +STT IYT+
Sbjct: 102 GILQTALKRAVDAAGIVKRANCHSLRHSFATHLLSRGYDIRTVQEPLGHKDVSTTMIYTH 161

Query: 301 V 301
           V
Sbjct: 162 V 162


>gi|238791280|ref|ZP_04634919.1| Integrase [Yersinia intermedia ATCC 29909]
 gi|238729413|gb|EEQ20928.1| Integrase [Yersinia intermedia ATCC 29909]
          Length = 291

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 8/156 (5%)

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           SH+      R++AIL  L G GLR+ E + L   +  +    +R QGKG K R + + P+
Sbjct: 123 SHQEPARRCRDAAILLTLCGAGLRVGELVKLQQDDYAEGVLVVR-QGKGRKYREIHVAPA 181

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST---TA 262
           V KA+  +  +      L  ++  +R   G P +  +    +  +   L +  S    T 
Sbjct: 182 VDKALTAWLAMSREGDALFTKI--YRS--GLPASTALTTAGVTAILEQLRITASVAEFTP 237

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           H LR +F T LL  G D+ +++ + GH  +STT  Y
Sbjct: 238 HDLRRTFITQLLEQGADINTVRQLAGHSDISTTARY 273


>gi|327183903|gb|AEA32350.1| phage integrase family protein [Lactobacillus amylovorus GRL 1118]
          Length = 322

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 126/293 (43%), Gaps = 39/293 (13%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF-ISKRR 79
           +L+  +IE G S+ T++ Y+    Q L         +  +  IR+++  ++R + +  ++
Sbjct: 51  FLEAKKIE-GCSERTIKYYKVTVEQLL---------RKVLDPIRKVTTEQMREYLVDYQK 100

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
               G  ++      I SF  +L++     E  IL         S  R +++ +A  LV 
Sbjct: 101 INNCGKTTIDNVRRNISSFFSWLEE-----EDYILK--------SPMRRIHKIRAEKLVK 147

Query: 140 NVLLHTSHET--KWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           NV+     E      D  R+ A++ LLY  G+R+ E + L   +I   +    + GKGDK
Sbjct: 148 NVITDEDIERLRDGCDCLRDVAMIDLLYSTGIRVGELVRLNRSDINFSERECVVFGKGDK 207

Query: 197 IRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
            R V      +  ++ Y     D  P  L +++  P  R      L     +  +RQL R
Sbjct: 208 ERRVYFDAKSKIHLINYLKSRTDANPA-LFVSLDRPYSR------LKISGVEIRLRQLGR 260

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            L L      H  R S AT  +  G  +  +Q ILGH ++ TT  Y  VN  N
Sbjct: 261 KLNLD-RVHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVNQNN 312


>gi|89147506|gb|ABD62613.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 40/59 (67%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            Q+ ++   R +G+      HT+RHS+ATHLL NG ++R +Q ++GH  + TT+IYT+V
Sbjct: 104 LQKAVKTAVRQVGIAKRVGCHTMRHSYATHLLENGTNIRIVQDLMGHKDVKTTEIYTHV 162


>gi|163782181|ref|ZP_02177180.1| hypothetical protein HG1285_18649 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882713|gb|EDP76218.1| hypothetical protein HG1285_18649 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 288

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 127/296 (42%), Gaps = 57/296 (19%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W +NLE  R  ++ T ++Y    + F+  +    EE + + + +   Y +         +
Sbjct: 7   WKRNLE--RTKNQRTTEAYVRHIKNFIDTVNIGEEELLKVSSAQIFKYVD---------S 55

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRK-------ITTESNILNMR---NLKKSNSLPRALN 130
             +G  SL  +LS +K F K+L +R+          E  I  +R   N KK  + P+AL 
Sbjct: 56  TDLGPTSLLANLSALKHFFKFLLRREYIDRDRFTDIEQAIEELREELNAKKRPTYPKALT 115

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-- 188
           +++    VDN+             R   I  L    G+R+ E  +L   +   D+S +  
Sbjct: 116 KEE----VDNIFNAVK------GKRYEKIYSLFLYSGIRLGEFENLDKSSFYLDKSGILW 165

Query: 189 -RIQ---GKGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLN 239
            R++    K +K R+ P+L   R       D     +  ++ N  ++             
Sbjct: 166 IRLEPHMTKRNKGRLAPVLAQDRDETYRITDRILKWIENYEENFRVK------------- 212

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            GV Q Y  +L + LG+P S   H+ RH++ T+L+++G  +  ++   GH  + TT
Sbjct: 213 RGVLQVYTDRLSKRLGIPFS--VHSFRHTYITNLVNSGFPVEVVKEFAGHSNIKTT 266


>gi|89147534|gb|ABD62627.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 40/61 (65%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           G+ Q  +++     G+      H+LRHSFATHLL  G D+R++Q +LGH  +STT IYT+
Sbjct: 102 GILQSALKRAVDATGIVKRANCHSLRHSFATHLLKRGYDIRTVQELLGHKDVSTTMIYTH 161

Query: 301 V 301
           V
Sbjct: 162 V 162


>gi|89147659|gb|ABD62688.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 43/69 (62%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R   ++  V Q+ ++       +P   + HT RHSFATHLL +G D+R++Q +LGH  +
Sbjct: 94  LRRHHVDESVLQKAVKAAVLSSKIPKHASCHTFRHSFATHLLESGYDIRTVQELLGHRDV 153

Query: 293 STTQIYTNV 301
            TT IYT+V
Sbjct: 154 RTTMIYTHV 162


>gi|89147478|gb|ABD62599.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 40/59 (67%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            QR +++      +  + + HTLRHSFATHLL NG D+R++Q +LGH  + TT IYT+V
Sbjct: 104 LQRTVKKALEKARINKAGSCHTLRHSFATHLLENGYDIRTVQELLGHKDVKTTMIYTHV 162


>gi|326385291|ref|ZP_08206951.1| phage family integrase/recombinase protein [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326195982|gb|EGD53196.1| phage family integrase/recombinase protein [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 269

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 19/149 (12%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           R   +L L    GLR +E  ++  +++    D + LR+ GKG + R+VP+   + + + +
Sbjct: 119 RERLMLALAATGGLRRAEIAAVRGEHVERGFDGAQLRVLGKGGRERLVPISDELAEQLEQ 178

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                            F   RG  L P    + I +L     LP   T HTLRH FA+ 
Sbjct: 179 RRGYA------------FPSPRGGHLTPAHVGKLIARL-----LPPGWTTHTLRHRFASA 221

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                 D+R++Q +LGH  ++TTQIYT +
Sbjct: 222 AYRADRDIRAVQELLGHASVATTQIYTAL 250


>gi|296506648|ref|YP_003667882.1| Integrase-recombinase [Bacillus thuringiensis BMB171]
 gi|296327235|gb|ADH10162.1| Integrase-recombinase [Bacillus thuringiensis BMB171]
          Length = 390

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 68/153 (44%), Gaps = 10/153 (6%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           N  IL  L   G RI E  +   +++  D +  L++ GKGDK+R + +   + + I E  
Sbjct: 218 NYTILLALASTGARIQELCTARVKDLHYDGKYWLKVTGKGDKVRELFIPEHLFQCISEMR 277

Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266
               F   LN   + P+F   RG   NP      +  + +   L          TAHT R
Sbjct: 278 RRRGFQTVLNCGDESPVFINQRGNFYNPKTLSNQVTDMIKKTNLDFLKYRENPVTAHTFR 337

Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
           H+FA   +  G  DL  +   LGH  + TT+IY
Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370


>gi|229119225|ref|ZP_04248533.1| Integrase-recombinase [Bacillus cereus Rock1-3]
 gi|228664222|gb|EEL19755.1| Integrase-recombinase [Bacillus cereus Rock1-3]
          Length = 390

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 10/153 (6%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           N  IL  L   G RI E  +   +++  D +  L++ GKGDK+R + +   + + I E  
Sbjct: 218 NYTILLALASTGARIQELCTARVKDLHYDGKYWLKVTGKGDKVRELFIPEHLFQCISEMR 277

Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266
               F   LN   + P+F   RG   NP      +  + +   L        + TAHT R
Sbjct: 278 RRRGFQTVLNRGDESPVFINQRGNFYNPKTLSNQVTDMIKKTNLDFLKYRENTVTAHTFR 337

Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
           H+FA   +  G  DL  +   LGH  + TT+IY
Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370


>gi|298528009|ref|ZP_07015413.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511661|gb|EFI35563.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 390

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 101/218 (46%), Gaps = 20/218 (9%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S+ R ++ +K      ++ +I  ++   N R L+ + +  R LN+++   L++ +    S
Sbjct: 165 SVNRYMALVKYIFNLAERWEIIDKAPTRNARKLEDNGARERYLNQEEVYRLLEALNSCKS 224

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLL 203
                       ++  L   G R +EA  LT Q +  ++    +   + K  K + VPL 
Sbjct: 225 QVV-------PDLIEFLLLTGARKTEAAELTWQEVDMERGIWELPAQRNKAGKPKTVPLS 277

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
            +  K +    D     +  N +        GKPL    F     ++R+  G+P S   H
Sbjct: 278 EAAIKVLKRRADNGSRWVFPNPET-------GKPLR--HFHNTWDRIRKQAGIP-SARLH 327

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            LRHSFA+ L+++G  L  +Q +LGH +LSTTQ Y ++
Sbjct: 328 DLRHSFASFLVNSGRSLYEVQKLLGHSQLSTTQRYAHL 365


>gi|89147492|gb|ABD62606.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 39/59 (66%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            QR I+   R   +    + HTLRHSFATHLL NG D+R++Q +LG   +STT IYT+V
Sbjct: 104 IQRAIKMALRKADIIKPASTHTLRHSFATHLLENGYDIRTVQELLGRKDVSTTMIYTHV 162


>gi|25169070|emb|CAD47906.1| putative transposase [Arthrobacter nicotinovorans]
          Length = 368

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 100/225 (44%), Gaps = 27/225 (12%)

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           +G + FL +L   +      I+ +R  K+   LP  L    A  ++D             
Sbjct: 143 TGWRPFLAHLAGDR-PQRRRIVKLREPKR---LPTVLPAATAQAVLDAC----------T 188

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---------KGDKIRIVPLL 203
             R+  +  LL+  G+RI EAL L  ++I   +  L I+          K    R +P+ 
Sbjct: 189 RLRDRFLFVLLWESGIRIGEALGLRHEDIAVAEGELTIRRRVNANRARAKSVSPRTIPIG 248

Query: 204 PSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
             V +   +Y      DL+ + + + L+ G RG+P+        +++LRR  G+      
Sbjct: 249 ADVVRLYGDYLHEEYGDLDSDYVFVNLWAGPRGRPMGYAAVYDLVKRLRRDTGVDFD--P 306

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNG 306
           H  RH++AT LL  G  +  I S+LGH  ++TT  +Y ++  ++ 
Sbjct: 307 HWFRHTYATRLLRAGTPIEVISSLLGHASVATTIDVYGHLTVEDA 351


>gi|224807|prf||1202257C gene tnpA
          Length = 361

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 99/217 (45%), Gaps = 37/217 (17%)

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
            K FL ++ K +   + N+L +R  KK     R L  K+   ++D    HT         
Sbjct: 139 FKGFLHHVNKGRY--QKNVLKLRVKKKQ---IRTLRSKEVKQIIDAC--HTK-------- 183

Query: 155 RNSAILYLLYGCGLRISEALSL--------------TPQNIMDDQSTLRIQGKGDKIRIV 200
           R+  IL L+Y  GLRI E LSL              TP+++  +++ ++++ K   I + 
Sbjct: 184 RDKLILMLMYEGGLRIGEVLSLRLEDIVTWDNQIHLTPRDVNVNEAYIKLR-KERTIHVS 242

Query: 201 PLLPSVRKA--ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
             L S+     I EY +    D    + + L  G  GKPL        +R++ +  G+  
Sbjct: 243 KELMSLYTDYLIYEYSEELEHDY---VFISLKEGYFGKPLKYQSVLDLVRRIVKRTGIEF 299

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             T+H LRH+ AT L+  G D+  +Q  LGH  + TT
Sbjct: 300 --TSHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTT 334


>gi|294101938|ref|YP_003553796.1| integrase family protein [Aminobacterium colombiense DSM 12261]
 gi|293616918|gb|ADE57072.1| integrase family protein [Aminobacterium colombiense DSM 12261]
          Length = 311

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 8/165 (4%)

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           V   LL    ++ +   R+ A+L L    G+R  EALSL  +++      + ++ +  K 
Sbjct: 120 VVKALLALPDQSTYTGLRSYALLLLSLDTGIRPREALSLRVEDVSIPARVVVVRAETAKT 179

Query: 198 RI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           R+   +P+     +AI++   + P +       PLF    G+PL    +   ++     +
Sbjct: 180 RVQRTLPISDQTAQAIMKLVSIRPKEWR---NAPLFCSRDGQPLRVNSWYHTVKGYGEKI 236

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           G  +  T ++LRH FA + L N G+  ++Q I+GH  L TT+IY 
Sbjct: 237 GADI--TPYSLRHLFALYFLRNNGNTFALQRIMGHDNLDTTKIYV 279


>gi|89147632|gb|ABD62675.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 42/64 (65%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+    Q+ +++  R   +    + HTLRHSFATHLL NG D+R++Q +LGH  + TT I
Sbjct: 99  LSDQAVQKAMKKAMRTAKIFKHGSCHTLRHSFATHLLENGYDIRTVQELLGHKDVRTTMI 158

Query: 298 YTNV 301
           YT+V
Sbjct: 159 YTHV 162


>gi|222151103|ref|YP_002560257.1| hypothetical protein MCCL_0854 [Macrococcus caseolyticus JCSC5402]
 gi|222120226|dbj|BAH17561.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 339

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 5/163 (3%)

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIR 198
           N LL++  ++ + D R    +++      RI E L++   +I  D +S      K +  R
Sbjct: 147 NKLLNSLDKSYYTDFRMFTAIHVFLDTFGRIDEVLNIKITDIDFDKRSIYFPNTKNNDGR 206

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            V      +K ++E  D    D N +    +F  + G       F+  +++  +   +  
Sbjct: 207 YVMFSLKTKKLLVELIDEMK-DYNNDF---VFLAVDGGKFTNQAFRNQLKKYCKEYNIKT 262

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + T H  RH+ +   L NGG++R +Q ILGH +L+TT+IY +V
Sbjct: 263 NITPHMFRHTASMLFLENGGNIRVLQKILGHKKLATTEIYAHV 305


>gi|188026429|ref|ZP_02997898.1| hypothetical protein PROSTU_04137 [Providencia stuartii ATCC 25827]
 gi|188019828|gb|EDU57868.1| hypothetical protein PROSTU_04137 [Providencia stuartii ATCC 25827]
          Length = 643

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 92/185 (49%), Gaps = 11/185 (5%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA--LSLTPQNI 181
           SLP++L+  +        LL++  +T  I  R  A++      GLRI E   LSL   + 
Sbjct: 125 SLPKSLSTDEI-----EQLLNSLGQTDPIGLRADAMVRCALDLGLRIGEIARLSLDDIDW 179

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNP 240
           +    TLR + KG +  ++PL  +   AI  Y  +  P  L+  +     +  R +P++ 
Sbjct: 180 VSGTITLR-RTKGRRDDVMPLPVTTGNAIAAYLQNGRPKTLHREV-FASHKTPRERPISR 237

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            V    IRQ+    GL   T+AH LRH+ A  LL+ G  ++ I  IL H  L+ T+IY  
Sbjct: 238 SVVSIAIRQVYTRAGLQY-TSAHLLRHTMANRLLATGASIKDIADILRHRSLNATRIYAK 296

Query: 301 VNSKN 305
           ++S+N
Sbjct: 297 LDSRN 301



 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 68/156 (43%), Gaps = 19/156 (12%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL---- 216
           LL   GLRISEALSL   ++   +S L I + K  K R + L PS  KA+ +Y +     
Sbjct: 463 LLASTGLRISEALSLRISDVDLRRSILIIRRTKFGKSRSIVLHPSTSKALHQYLNQRKLT 522

Query: 217 -CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT-----LRHSFA 270
               D +    + L   + GK L      +  R LRR LG     T H      LRHSF 
Sbjct: 523 RAASDEDAYFFIGLRADVLGKRLGGQQVCQVFRALRRELGWVNRGTHHAPRIHDLRHSFV 582

Query: 271 TH---LLSNGG-----DLRSIQSILGHFRLSTTQIY 298
                L    G     ++ S+ + LGH  ++ T  Y
Sbjct: 583 VRRIILWQQQGIDVAHEMLSLSTYLGHASIAETYWY 618


>gi|149924555|ref|ZP_01912912.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149814565|gb|EDM74148.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 374

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 20/160 (12%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----------GKGDKIRIVPL 202
           DA + AI+ L    GLR  E   L   ++   ++ L ++           K DKIR++P+
Sbjct: 200 DATDLAIVLLGGDAGLRAGEIRGLHWNSLDFQRNRLTVEWAEWRGQITTPKHDKIRVLPM 259

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
              ++KA+ +     P D  L +  P      G PL  G+  + +R++ +  GL      
Sbjct: 260 TQRLQKALRQ----LPRDRKLVLAQP-----SGDPLTVGLLSKRLRRVEKRAGL-RDKGP 309

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           HTLRH+F +HL   G   R IQ + GH  L TT+ Y +++
Sbjct: 310 HTLRHTFCSHLAMRGIPARVIQQLAGHSSLVTTERYMHLS 349


>gi|294340302|emb|CAZ88679.1| putative Phage integrase [Thiomonas sp. 3As]
          Length = 410

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 5/151 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEY 213
           R  A++  +   GLR SEA++L   +I     T+RI G K  +  ++PL      AI +Y
Sbjct: 246 RCYALVRCVVDLGLRSSEAIALELDDIDWVAGTVRIVGSKSRRADVLPLPQLTGAAIADY 305

Query: 214 Y--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
              +  P   +  + +     +  +P+   V +R +RQ  R  GLP  T  H LRH+ A+
Sbjct: 306 VRSERRPQTTSRRVFVRHVAPV-DEPVAADVVRRAVRQAYRRAGLPY-TRVHILRHTLAS 363

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            LL+ GG L+ +  +L H  L T+ IY  V+
Sbjct: 364 RLLNTGGTLKEVADVLRHRELDTSLIYAKVD 394


>gi|148975049|ref|ZP_01812029.1| Integrase [Vibrionales bacterium SWAT-3]
 gi|145965558|gb|EDK30807.1| Integrase [Vibrionales bacterium SWAT-3]
          Length = 373

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 21/138 (15%)

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
             G RISEAL+LT   + + + T   + KG K R VP+ P++   IL+            
Sbjct: 238 ATGARISEALTLTRSQVAEFKLTY-TETKGKKNRSVPISPALYHEILDI----------- 285

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRS 282
                   +    +    ++   R ++R L   +P     H LRH+FA+H + N GD+  
Sbjct: 286 -------AVSDHKIFDTTYKDAWRYIKRALPNHVPSGQATHVLRHTFASHFMMNKGDILV 338

Query: 283 IQSILGHFRLSTTQIYTN 300
           +Q ILGH ++  T  Y++
Sbjct: 339 LQRILGHTKIEQTMAYSH 356


>gi|60681287|ref|YP_211431.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
 gi|60492721|emb|CAH07494.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
          Length = 431

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 71/151 (47%), Gaps = 20/151 (13%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYY 214
            L+GC  GL   +  +LT   I  MD      I  +  K R+   VPL+   ++ I  Y 
Sbjct: 252 FLFGCFTGLSYIDIKTLTHDKIQRMDFDGEEWIITRRTKTRVSSNVPLMEIAKELIERYK 311

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL- 273
            L   DL   I           P N  V  R+++Q+ +  G+      H  RH+FAT + 
Sbjct: 312 GLAGGDLVFPI-----------PSNS-VCNRHLKQIAKACGIHKEIGFHLSRHTFATTVY 359

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           L NGG + ++  ILGH  +STTQIY  V ++
Sbjct: 360 LCNGGTIEALSKILGHKHISTTQIYAEVTNR 390


>gi|15923046|ref|NP_370580.1| transposase A [Staphylococcus aureus subsp. aureus Mu50]
 gi|15924649|ref|NP_372183.1| transposase A [Staphylococcus aureus subsp. aureus Mu50]
 gi|15925759|ref|NP_373292.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|15926488|ref|NP_374021.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|15927238|ref|NP_374771.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|15927727|ref|NP_375260.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp.
           aureus N315]
 gi|15928181|ref|NP_375714.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp.
           aureus N315]
 gi|49482302|ref|YP_039526.1| transposase A 1 [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49483903|ref|YP_041127.1| transposase A 2 [Staphylococcus aureus subsp. aureus MRSA252]
 gi|57865838|ref|YP_190048.1| transposase A [Staphylococcus epidermidis RP62A]
 gi|57867121|ref|YP_188798.1| Tn554, transposase A [Staphylococcus epidermidis RP62A]
 gi|57867260|ref|YP_188919.1| Tn554, transposase A [Staphylococcus epidermidis RP62A]
 gi|148266488|ref|YP_001245431.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|148268140|ref|YP_001247083.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150392521|ref|YP_001315196.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150394207|ref|YP_001316882.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156978386|ref|YP_001440645.1| transposase A [Staphylococcus aureus subsp. aureus Mu3]
 gi|156979977|ref|YP_001442236.1| transposase A [Staphylococcus aureus subsp. aureus Mu3]
 gi|221141569|ref|ZP_03566062.1| transposase A [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|254663984|ref|ZP_05143456.1| transposase A [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|255006445|ref|ZP_05145046.2| transposase A [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257428442|ref|ZP_05604840.1| transposase A, tpnA [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431611|ref|ZP_05607979.1| tnpA protein [Staphylococcus aureus subsp. aureus 68-397]
 gi|257793727|ref|ZP_05642706.1| transposase [Staphylococcus aureus A9781]
 gi|258411264|ref|ZP_05681541.1| transposase [Staphylococcus aureus A9763]
 gi|258422476|ref|ZP_05685387.1| transposase for transposon [Staphylococcus aureus A9719]
 gi|258447337|ref|ZP_05695483.1| tnpA protein [Staphylococcus aureus A6300]
 gi|258448322|ref|ZP_05696447.1| tnpA protein [Staphylococcus aureus A6224]
 gi|258451924|ref|ZP_05699941.1| tnpA protein [Staphylococcus aureus A5948]
 gi|258454551|ref|ZP_05702517.1| tnpA protein [Staphylococcus aureus A5937]
 gi|282929818|ref|ZP_06336961.1| transposase A [Staphylococcus aureus A10102]
 gi|293503535|ref|ZP_06667382.1| transposase A [Staphylococcus aureus subsp. aureus 58-424]
 gi|295407732|ref|ZP_06817517.1| transposase A [Staphylococcus aureus A8819]
 gi|295429348|ref|ZP_06821969.1| transposase A transposon Tn554 [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297246795|ref|ZP_06930604.1| transposase A [Staphylococcus aureus A8796]
 gi|304378957|ref|ZP_07361719.1| transposase A [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|60415970|sp|P0A050|TNPA_STAAM RecName: Full=Transposase A from transposon Tn554
 gi|60415971|sp|P0A051|TNPA_STAAN RecName: Full=Transposase A from transposon Tn554
 gi|60415972|sp|P0A052|TNPA_STAAU RecName: Full=Transposase A from transposon Tn554
 gi|581277|emb|CAA26960.1| tnpA protein [Staphylococcus aureus]
 gi|5360831|dbj|BAA82201.1| transposaseA [Staphylococcus aureus]
 gi|13699971|dbj|BAB41270.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|13700702|dbj|BAB41999.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|13701456|dbj|BAB42750.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|13701947|dbj|BAB43239.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp.
           aureus N315]
 gi|13702552|dbj|BAB43693.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp.
           aureus N315]
 gi|14021043|dbj|BAB47667.1| transposase A(Tn554) [Staphylococcus aureus]
 gi|14245823|dbj|BAB56218.1| transposase A [Staphylococcus aureus subsp. aureus Mu50]
 gi|14247431|dbj|BAB57821.1| transposase A [Staphylococcus aureus subsp. aureus Mu50]
 gi|27529892|dbj|BAC53829.1| transposase A(Tn554) [Staphylococcus aureus]
 gi|28465874|dbj|BAC57491.1| transposaseA [Staphylococcus aureus]
 gi|49240431|emb|CAG39082.1| transposase A 1 [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49242032|emb|CAG40731.1| transposase A 2 [Staphylococcus aureus subsp. aureus MRSA252]
 gi|57636496|gb|AAW53284.1| transposase A [Staphylococcus epidermidis RP62A]
 gi|57637779|gb|AAW54567.1| Tn554, transposase A [Staphylococcus epidermidis RP62A]
 gi|57637918|gb|AAW54706.1| Tn554, transposase A [Staphylococcus epidermidis RP62A]
 gi|70568188|dbj|BAE06285.1| transposase A for Tn554 [Staphylococcus aureus]
 gi|147739557|gb|ABQ47855.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|147741209|gb|ABQ49507.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149944973|gb|ABR50909.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|149946659|gb|ABR52595.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156720521|dbj|BAF76938.1| transposase A [Staphylococcus aureus subsp. aureus Mu3]
 gi|156722112|dbj|BAF78529.1| transposase A [Staphylococcus aureus subsp. aureus Mu3]
 gi|195963185|emb|CAQ43010.1| transposase A [Staphylococcus aureus]
 gi|221327665|gb|ACM17509.1| transposase A [Staphylococcus aureus]
 gi|238773853|dbj|BAH66416.1| transposaseA [Staphylococcus aureus]
 gi|257275283|gb|EEV06770.1| transposase A, tpnA [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257277665|gb|EEV08349.1| tnpA protein [Staphylococcus aureus subsp. aureus 68-397]
 gi|257787699|gb|EEV26039.1| transposase [Staphylococcus aureus A9781]
 gi|257839993|gb|EEV64460.1| transposase [Staphylococcus aureus A9763]
 gi|257841542|gb|EEV65980.1| transposase for transposon [Staphylococcus aureus A9719]
 gi|257853863|gb|EEV76820.1| tnpA protein [Staphylococcus aureus A6300]
 gi|257858417|gb|EEV81295.1| tnpA protein [Staphylococcus aureus A6224]
 gi|257860407|gb|EEV83238.1| tnpA protein [Staphylococcus aureus A5948]
 gi|257863278|gb|EEV86040.1| tnpA protein [Staphylococcus aureus A5937]
 gi|269939560|emb|CBI47921.1| transposase A 1 [Staphylococcus aureus subsp. aureus TW20]
 gi|269941142|emb|CBI49529.1| transposase C 2 [Staphylococcus aureus subsp. aureus TW20]
 gi|282167045|gb|ADA81061.1| Transposase A from transposon Tn554 [Staphylococcus aureus]
 gi|282589025|gb|EFB94130.1| transposase A [Staphylococcus aureus A10102]
 gi|285815781|gb|ADC36268.1| Transposase A from transposon Tn554 [Staphylococcus aureus
           04-02981]
 gi|285817342|gb|ADC37829.1| Transposase A from transposon Tn554 [Staphylococcus aureus
           04-02981]
 gi|288551790|gb|ADC53386.1| transposase A [Staphylococcus aureus]
 gi|291095201|gb|EFE25466.1| transposase A [Staphylococcus aureus subsp. aureus 58-424]
 gi|294967408|gb|EFG43452.1| transposase A [Staphylococcus aureus A8819]
 gi|295126726|gb|EFG56371.1| transposase A transposon Tn554 [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297176346|gb|EFH35621.1| transposase A [Staphylococcus aureus A8796]
 gi|299758064|dbj|BAJ10039.1| transposase A [Staphylococcus aureus]
 gi|302750706|gb|ADL64883.1| phage integrase [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|302751486|gb|ADL65663.1| phage integrase [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304342463|gb|EFM08340.1| transposase A [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|312828683|emb|CBX33525.1| phage integrase, N-terminal SAM-like domain protein [Staphylococcus
           aureus subsp. aureus ECT-R 2]
 gi|315128350|gb|EFT84362.1| transposase A [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195563|gb|EFU25950.1| transposase A [Staphylococcus aureus subsp. aureus CGS00]
 gi|329314333|gb|AEB88746.1| Transposase A from transposon Tn554 [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329727407|gb|EGG63863.1| phage integrase, N-terminal SAM domain protein [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 361

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 99/217 (45%), Gaps = 37/217 (17%)

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
            K FL ++ K +   + N+L +R  KK     R L  K+   ++D    HT         
Sbjct: 139 FKGFLHHVNKGRY--QKNVLKLRVKKKQ---IRTLRSKEVKQIIDAC--HTK-------- 183

Query: 155 RNSAILYLLYGCGLRISEALSL--------------TPQNIMDDQSTLRIQGKGDKIRIV 200
           R+  IL L+Y  GLRI E LSL              TP+++  +++ ++++ K   I + 
Sbjct: 184 RDKLILMLMYEGGLRIGEVLSLRLEDIVTWDNQIHLTPRDVNVNEAYIKLR-KERTIHVS 242

Query: 201 PLLPSVRKA--ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
             L S+     I EY +    D    + + L  G  GKPL        +R++ +  G+  
Sbjct: 243 KELMSLYTDYLIYEYSEELEHDY---VFISLKEGYFGKPLKYQSVLDLVRRIVKRTGIEF 299

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             T+H LRH+ AT L+  G D+  +Q  LGH  + TT
Sbjct: 300 --TSHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTT 334


>gi|257438381|ref|ZP_05614136.1| site-specific recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
 gi|257199212|gb|EEU97496.1| site-specific recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
          Length = 342

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 22/165 (13%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-----KG----------DKI 197
           D R    + LL G G+R+ E L+L PQ I +D S + I+      KG          D I
Sbjct: 168 DDRMGLSIRLLLGTGMRMQELLALEPQFIEEDGSVIHIRQAVKVVKGTVSIGSPKSKDSI 227

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R +P+  +VR   ++  D          Q        G P NP  F+   R+     G  
Sbjct: 228 RDIPVPLNVRPCAIKLRDTTD-------QFIWESPKTGLPCNPTHFRDVFRKSLEEAGDV 280

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              T H+ RH++ + + + G D+++IQSI+GH     T+ Y +V 
Sbjct: 281 RLLTPHSCRHTYVSQMQALGVDIQTIQSIVGHADTEMTEHYLHVQ 325


>gi|295105295|emb|CBL02839.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 341

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 22/165 (13%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-----KG----------DKI 197
           D R    + LL G G+R+ E L+L PQ I +D S + I+      KG          D I
Sbjct: 167 DDRMGLSIRLLLGTGMRMQELLALEPQFIEEDGSVIHIRQAVKVVKGTVSIGSPKSKDSI 226

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R +P+  +VR   ++  D          Q        G P NP  F+   R+     G  
Sbjct: 227 RDIPVPLNVRPCAIKLRDTTD-------QFIWESPKTGLPCNPTHFRDVFRKSLEEAGDV 279

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              T H+ RH++ + + + G D+++IQSI+GH     T+ Y +V 
Sbjct: 280 RLLTPHSCRHTYVSQMQALGVDIQTIQSIVGHADTEMTEHYLHVQ 324


>gi|251777699|ref|ZP_04820619.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243082014|gb|EES47904.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 313

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 70/152 (46%), Gaps = 6/152 (3%)

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKA 209
           + + R+  I+  L   G+R+S   ++   +I  D ST+ I   K  K  IVPL   +   
Sbjct: 136 FTEYRDWVIINFLLSTGVRLSSLANIKIGDIDFDTSTINITHTKNRKALIVPLNNQILTI 195

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           + EY     +    +    LF  I GKPL        IR      G+  +T  H  RH+F
Sbjct: 196 LKEY----LYQRGGDKDEILFCTIWGKPLTRNSLGTAIRHYNNSRGVT-TTGIHRFRHTF 250

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           A   + NG ++ ++Q ILGH  L  TQ Y NV
Sbjct: 251 AKKWVLNGNNIVALQKILGHSSLDMTQKYINV 282


>gi|239631499|ref|ZP_04674530.1| site-specific tyrosine recombinase XerS [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|239525964|gb|EEQ64965.1| site-specific tyrosine recombinase XerS [Lactobacillus paracasei
           subsp. paracasei 8700:2]
          Length = 358

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 70/335 (20%), Positives = 140/335 (41%), Gaps = 64/335 (19%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFIS-------- 76
           ++  TL  Y    ++FL +L      A  + + + +  +  LS  + +AF++        
Sbjct: 21  IADSTLYQYLHFYQEFLNWLINSGVTAASSPQTVPLTVLEHLSLRDAQAFMAYLLERPSK 80

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES-------NILNMRNLKKSNSLPRAL 129
               +++  RS+   L GIK+  ++L +              N+ N   LK         
Sbjct: 81  THHNKRMTRRSVALRLVGIKALYRFLTEESEPHADGEPYFYRNVWNKVKLKTHTETASYR 140

Query: 130 NEK-QALTLVDNVLLHTSHETKWID-------------------ARNSAILYLLYGCGLR 169
           N K Q +  VD      +   +W+D                    RN A++ LL+G G+R
Sbjct: 141 NHKLQEMLFVDG---EDAKFLQWLDQSYAQQLQAKPRRYFEATKVRNLAMIALLFGSGVR 197

Query: 170 ISEALSLTPQNIMDDQSTLRIQGKG---DKIRIVPLL-PSVRKAILEYYDLCPFDLNLNI 225
           +SE +++  +++  D+ T+++  KG   D++     + P V+  + +   +  +    + 
Sbjct: 198 VSELVNMNLEDLNMDRHTVQVVRKGNFQDRVNFADWIDPYVQAYLTQRAAIIGYQKPTS- 256

Query: 226 QLPLFRGIRGKPLN-------PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
             PLF  + G+ +N          F+RY     R       +T H  RH+  T++ +   
Sbjct: 257 --PLFVTVVGQKINRIRQNTIEAFFKRYTTDYGR------PSTPHKARHTLGTNIYTVTK 308

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           D++ +   LG    S T +Y N++ K+G + + E+
Sbjct: 309 DVQQVADQLGQTTTSATDLYINLSDKSGKEALREV 343


>gi|237711030|ref|ZP_04541511.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|229454874|gb|EEO60595.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA]
          Length = 352

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 16/166 (9%)

Query: 143 LHTSHETKWIDARNSAILYLLYGC---GLRISEALSLTPQNIMDDQS----TLRIQGKGD 195
           LH   E K+   R  A+  +   C   GL  ++   L P++I  D +      + + K +
Sbjct: 178 LHAIMEKKFDIPRLEAVRDIFVFCCLSGLAFTDVQHLKPEHITKDINGEWWIRKAREKTN 237

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            +  +PLL  +   I+E Y   P  L  N+ LP+       P N  +   Y++++    G
Sbjct: 238 NVCHIPLL-DIPAMIIEKYRKNPVCLQKNMVLPV-------PSNQRM-NSYLKEIADVCG 288

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +    T H  RHSFA   L+N   + +I  +LGH  + TT+IY  V
Sbjct: 289 ITKKLTTHIARHSFACFALANKVSMETIAKMLGHSDIRTTKIYAKV 334


>gi|227511532|ref|ZP_03941581.1| integrase [Lactobacillus buchneri ATCC 11577]
 gi|227085177|gb|EEI20489.1| integrase [Lactobacillus buchneri ATCC 11577]
          Length = 305

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 140/296 (47%), Gaps = 34/296 (11%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI- 71
           +LL+  Q+W+ NL  +  + K+T + YE   RQ ++ LA      + +  + +L+Y ++ 
Sbjct: 6   KLLRYFQDWM-NLYKKDAVRKVTYRKYEMTYRQ-IVSLA----PDLRMCELSRLTYQKLL 59

Query: 72  --RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
              A   +R+T     R +K SL  I +  + + +R  T ++ I   +  K      + L
Sbjct: 60  NDYAETHERQTVMDFHRHIKSSL--IDALEEGILERDPTRKAII---KGKKPGPHKTKFL 114

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           N+ +   ++D++ L       W        + L+   GLR SEAL++TP +    + TL 
Sbjct: 115 NQHEVQLMLDSLSLDAG--VNW-----DYFILLITKTGLRFSEALAVTPNDFDFARQTLN 167

Query: 190 IQGKGD-KIRIVPLLP-----SVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNP 240
           I    D K R     P     S+RK  L++  +  F      L+   P+F  +R K  N 
Sbjct: 168 INKTWDYKSRQAGFAPTKNLSSMRKIQLDWQTVIQFSQLTKELSEDKPIF--VRSKVYND 225

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            +   Y+ +L +  G+P+  + H LRH+ A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 226 TI-NHYLERLCKKSGIPI-ISVHGLRHTHASLLLYAGVSIASVARRLGHSNMNTTQ 279


>gi|89147357|gb|ABD62539.1| integrase [uncultured bacterium]
          Length = 167

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 41/64 (64%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           ++    QR ++   R   +    + HT RHSFATHLL NG D+R++Q +LGH  +STT I
Sbjct: 103 VDESFLQRAVKIAVREARINKPGSCHTFRHSFATHLLENGYDIRTVQELLGHKDVSTTMI 162

Query: 298 YTNV 301
           YT+V
Sbjct: 163 YTHV 166


>gi|86140615|ref|ZP_01059174.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
 gi|85832557|gb|EAQ51006.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
          Length = 422

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 16/150 (10%)

Query: 162 LLYGC--GLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRI-VPLLPSVRKAILEYYD 215
            L+ C  G+  ++   LTP NI    DD+  +    +    R+ VPL+P+  + ++E Y 
Sbjct: 251 FLFSCYTGISYADLNKLTPNNIWKGEDDKKWIVTNRQKTNTRVKVPLMPTALR-LIEKYR 309

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
             P        L    G    P+       Y++++    GL  + T H  RH+FAT + L
Sbjct: 310 EHP--------LTEVSGTLFPPITNERANLYLKEIAEACGLTKNLTFHMARHTFATTVTL 361

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           SNG  + ++  +LGH +++TTQIY  V  K
Sbjct: 362 SNGMPIETVSKLLGHTKIATTQIYARVLDK 391


>gi|89147338|gb|ABD62531.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 42/61 (68%), Gaps = 3/61 (4%)

Query: 244 QRYIRQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +R  RQL++ +   G+    + HTLRHSFATH L  G D+R++Q +LGH  +STT IYT+
Sbjct: 102 ERLNRQLKKAVVQAGIAKHVSVHTLRHSFATHSLQAGTDIRTVQELLGHSDVSTTMIYTH 161

Query: 301 V 301
           V
Sbjct: 162 V 162


>gi|295100875|emb|CBK98420.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 341

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 22/165 (13%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-----KG----------DKI 197
           D R    + LL G G+R+ E L+L PQ I +D S + I+      KG          D I
Sbjct: 167 DDRMGLSIRLLLGTGMRMQELLALEPQFIEEDGSVIHIRQAVKVVKGTVSIGSPKSKDSI 226

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R +P+  +VR   ++  D          Q        G P NP  F+   R+     G  
Sbjct: 227 RDIPVPLNVRPCAIKLRDTTD-------QFIWESPKTGLPCNPTHFRDVFRKSLEEAGDV 279

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              T H+ RH++ + + + G D+++IQSI+GH     T+ Y +V 
Sbjct: 280 RLLTPHSCRHTYVSQMQALGVDIQTIQSIVGHADTEMTEHYLHVQ 324


>gi|330822190|ref|YP_004351018.1| Phage integrase family protein [Burkholderia gladioli BSR3]
 gi|327374342|gb|AEA65695.1| Phage integrase family protein [Burkholderia gladioli BSR3]
          Length = 611

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 97/243 (39%), Gaps = 47/243 (19%)

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
           +T    I     L+   +LP  +  +    L D           W  AR  A++ L+   
Sbjct: 352 VTDPKPIKRATKLQVQRALPIDVWTRVRAELADRSEGFGPQGPDWRVAR--ALVLLMGDA 409

Query: 167 GLRISEALSL--------TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           GLRI EA+++          ++ +     LR+ GKG+K RIVPL     +A+ E++    
Sbjct: 410 GLRIEEAVTVERGGLQWWPAEDEIPATWMLRLVGKGNKERIVPLTEDAVEALREHWQDRG 469

Query: 219 FDLNL----NIQLPLF--------------RGI-------RGKPLNPGVFQRYI-RQLRR 252
            DL+       +LPL                G+       R     P   +R + R L R
Sbjct: 470 LDLDAPGANADRLPLVSPTVVPPTPAGREKHGVTATGQVTRAAGYTPRAARRVVTRALER 529

Query: 253 YLG-LP----------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            LG LP            T+ H  RH+F T  ++ G  +  +Q +LGH  L TT IY N 
Sbjct: 530 LLGELPDLEESARRQLAQTSPHAFRHTFGTQSVAAGMAIEVLQQVLGHGSLQTTTIYVNA 589

Query: 302 NSK 304
             +
Sbjct: 590 EQR 592


>gi|312793729|ref|YP_004026652.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180869|gb|ADQ41039.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 319

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 120/287 (41%), Gaps = 32/287 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +G S LT++ YE   R      AF+          ++L     R  + +  +Q +   + 
Sbjct: 28  QGRSDLTIRDYEIHIR------AFFKRYPDCFNDTQKL-----RKCLIEYLSQPMKPVTY 76

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--LLHTS 146
              +  +K+FL +  +  I   + I   +        PR  +++     ++ +  LL   
Sbjct: 77  NLRMKNLKAFLNWCVEEGIIPTNPIAKFK--------PRKTDDRIVEIDIETLQKLLQLP 128

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI-----RIVP 201
               +   R+ A++ L    G+R  EA SL   +   D   +++    D       R++P
Sbjct: 129 DRKTFAGLRDYALMLLTLDTGIRPKEAFSLLKDHF--DFKNMQVVIPSDVAKTRVSRVLP 186

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           + P    AI +   +       +  +P+F  + GKPLN   +   +R+  + LG+ +   
Sbjct: 187 ISPVTANAIKKL--ISSRHPQWDDSVPVFCSVTGKPLNRYRWNERMREYSKQLGVKIK-- 242

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            + LRH FA   L NGG   S+Q I+GH  L  T+ Y +   K+  D
Sbjct: 243 PYDLRHMFALLYLKNGGYELSLQKIMGHTTLEMTKKYVHFTQKDLQD 289


>gi|332655467|ref|ZP_08421204.1| integrase/recombinase, phage integrase family [Ruminococcaceae
           bacterium D16]
 gi|332515602|gb|EGJ45215.1| integrase/recombinase, phage integrase family [Ruminococcaceae
           bacterium D16]
          Length = 327

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 104/236 (44%), Gaps = 25/236 (10%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           + + R++ K+   +++R LS   S+  +L+      +S +  +  +K +  +     ++ 
Sbjct: 103 YQTSRKSSKVTIDNIRRILS---SYFSWLEDEDYIVKSPVRRIHKVKTAKVIKETYTDEA 159

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              + DN            + R+ A++ LL   G+R+ E ++L   +I  ++    + GK
Sbjct: 160 LEIMRDNCC----------NVRDLAMIDLLASSGMRVGEMIALNRDDINFNERECVVFGK 209

Query: 194 GDKIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           G K RIV      +  +  Y     D C   L +++  P  R      L  G  +R +R+
Sbjct: 210 GSKERIVYFDARTKIHLQNYLESRTDTCSA-LFVSLTAPNDR------LQIGGVERRLRE 262

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           L + L LP     H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V  +N
Sbjct: 263 LGKRLNLP-RVHPHKFRRTLATSAIDKGMPIEQVQQLLGHQKIDTTMHYAMVKQQN 317


>gi|298484293|ref|ZP_07002456.1| integrase [Bacteroides sp. D22]
 gi|298269540|gb|EFI11138.1| integrase [Bacteroides sp. D22]
          Length = 431

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 20/151 (13%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYY 214
            L+GC  GL   +  +LT   I  MD      I  +  K R+   VPL+   ++ I  Y 
Sbjct: 252 FLFGCFTGLSYIDIKTLTHDKIQRMDFDGEEWIITRRTKTRVSSNVPLMEIAKELIERYK 311

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL- 273
            L   DL      P+       P N  V  R+++Q+ +  G+      H  RH+FAT + 
Sbjct: 312 GLAGGDL----VFPM-------PSNS-VCNRHLKQIAKACGIHKEIGFHLSRHTFATTIY 359

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           L NGG + ++  ILGH  +STTQIY  V ++
Sbjct: 360 LCNGGTIEALSKILGHKHISTTQIYAEVTNR 390


>gi|265757008|ref|ZP_06090870.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263233507|gb|EEZ19136.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 420

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 129/300 (43%), Gaps = 48/300 (16%)

Query: 32  SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           S +T+  Y+   R+   F+  FY ++ IT     +LS   I+AF    +T+      L R
Sbjct: 139 SPVTINRYKNVLRKLETFVPRFYEKDDITFH---ELSPDFIKAFDVFLKTEA----GLCR 191

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           +   I  ++K LKK        I NM   K+          K      D V L T++E +
Sbjct: 192 N--TIVRYMKCLKK--------ITNMAIAKEWMRKDPFYGYKMEQDETDPVFL-TNNELQ 240

Query: 151 WIDARNSAILYL-------LYGC--GLRISEALSLTPQNIMDDQS----------TLRIQ 191
            I  RN  I  L       L+ C  GL  ++  +L P+++  D +           L  +
Sbjct: 241 AIMNRNFDIPRLELVKDIFLFACFTGLAFADVSTLRPEHLEQDNNGDWWIRKGRVKLERR 300

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            K   I  VPLLP V  AIL+ Y+  P  L     LP+    +           Y++++ 
Sbjct: 301 RKSSSIANVPLLP-VPLAILKKYESHPICLKQGTCLPVVCNQKA--------NSYLKEIA 351

Query: 252 RYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            + G+  + T H  RH+FAT + L+N   L+ + ++LGH     TQ Y  V  +N  D M
Sbjct: 352 DFCGIKKNLTTHAARHTFATTVTLANNVPLQEVSAMLGHASTRMTQHYARVMDRNLKDNM 411


>gi|160945568|ref|ZP_02092794.1| hypothetical protein FAEPRAM212_03097 [Faecalibacterium prausnitzii
           M21/2]
 gi|313113644|ref|ZP_07799225.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
 gi|158443299|gb|EDP20304.1| hypothetical protein FAEPRAM212_03097 [Faecalibacterium prausnitzii
           M21/2]
 gi|310624012|gb|EFQ07386.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
          Length = 342

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 22/165 (13%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-----KG----------DKI 197
           D R    + LL G G+R+ E L+L PQ I +D S + I+      KG          D I
Sbjct: 168 DDRMGLSIRLLLGTGMRMQELLALEPQFIEEDGSVIHIRQAVKVVKGTVSIGSPKSKDSI 227

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R +P+  +VR   ++  D          Q        G P NP  F+   R+     G  
Sbjct: 228 RDIPVPLNVRPCAIKLRDTTD-------QFIWESPKTGLPCNPTHFRDVFRKSLEEAGDV 280

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              T H+ RH++ + + + G D+++IQSI+GH     T+ Y +V 
Sbjct: 281 RLLTPHSCRHTYVSQMQALGVDIQTIQSIVGHADTEMTEHYLHVQ 325


>gi|156976230|ref|YP_001447136.1| integrase [Vibrio harveyi ATCC BAA-1116]
 gi|156527824|gb|ABU72909.1| hypothetical protein VIBHAR_05002 [Vibrio harveyi ATCC BAA-1116]
          Length = 345

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 70/144 (48%), Gaps = 21/144 (14%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I  +    G RISEAL+LT   I + + T     KG + R VP+ PS+ + IL   D+  
Sbjct: 204 IAKICLATGARISEALTLTRTQITEFKLTY-TDTKGKRNRSVPISPSLYQEIL---DIAV 259

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSN 276
            D ++               N   ++   R ++R L   +P     H LRH+FA+H + N
Sbjct: 260 SDHDI--------------FNTS-YKDAWRYIKRALPEHVPNGQATHVLRHTFASHFMMN 304

Query: 277 GGDLRSIQSILGHFRLSTTQIYTN 300
            GD+  +Q ILGH ++  T  Y++
Sbjct: 305 KGDILVLQRILGHTKIEQTMAYSH 328


>gi|84516489|ref|ZP_01003848.1| hypothetical protein SKA53_07756 [Loktanella vestfoldensis SKA53]
 gi|84509525|gb|EAQ05983.1| hypothetical protein SKA53_07756 [Loktanella vestfoldensis SKA53]
          Length = 156

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 11/145 (7%)

Query: 166 CGLRISEALSLTPQNIMDDQSTLR-------IQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
            GLR  E  +LT  N+ D+   +R        Q KG + R V L   +R+A+++Y D   
Sbjct: 6   AGLRAKEIAALTVGNVFDETGAVREQFILSAAQSKGGQTRTVYLNQRLRRALVDYGDTIK 65

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
               ++ Q  LF   +G   +     +    + +  GL    ++H+ R ++ T L + G 
Sbjct: 66  L---MDPQQALFASQKGGHFSANTMCQLFLDIYKACGLK-DASSHSGRRTYITRLANKGV 121

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNS 303
            +R + ++ GH  +STTQ Y +VNS
Sbjct: 122 GVRLLAALAGHAHISTTQRYIDVNS 146


>gi|229516134|ref|ZP_04405583.1| integrase [Vibrio cholerae RC9]
 gi|229346784|gb|EEO11753.1| integrase [Vibrio cholerae RC9]
          Length = 98

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V  K GG  +    
Sbjct: 30  GITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV-LKVGGAGVRSPL 88

Query: 315 DQTHPSITQK 324
           D   P  +++
Sbjct: 89  DALPPLTSER 98


>gi|225567989|ref|ZP_03777014.1| hypothetical protein CLOHYLEM_04062 [Clostridium hylemonae DSM
           15053]
 gi|225163277|gb|EEG75896.1| hypothetical protein CLOHYLEM_04062 [Clostridium hylemonae DSM
           15053]
          Length = 364

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 120/288 (41%), Gaps = 35/288 (12%)

Query: 38  SYECDTRQFLIFLAF-------YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD----- 85
           +Y  D R F  FL         +T  +  +  + +L   +I  ++   +  +  D     
Sbjct: 60  NYAYDIRVFFHFLMEANPNYKNHTISQFDVSDLEKLEPVDIEEYMEYLKVYRHEDELITN 119

Query: 86  --RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV-- 141
             + L R +S ++SF  Y  K +I T++  L +   K  +     L+  +   L+D V  
Sbjct: 120 SEKGLSRKMSALRSFYSYYFKHQIITKNPTLLVDMPKLHDKAIIRLDADEVALLLDYVET 179

Query: 142 --------LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                    L   H+TK    R+ AIL LL G G+R+SE + L   ++    + + +  K
Sbjct: 180 CGSKLSGQALTYYHKTK---DRDLAILTLLLGTGIRVSECVGLDLTDVDFKNNGITVTRK 236

Query: 194 GDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           G    +V     V KA+L Y +       P   + N    LF   + + +     +  ++
Sbjct: 237 GGNQMVVYFGEEVEKALLTYINGDRKAATPLSGHEN---ALFLSTQRRRMGIQAMENMVK 293

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           +  R +      T H LR ++ T L    GD+  +  +LGH  ++TT+
Sbjct: 294 KYARQVTPNKKITPHKLRSTYGTSLYKETGDIYLVADVLGHKDVNTTK 341


>gi|257055983|ref|YP_003133815.1| site-specific recombinase XerD [Saccharomonospora viridis DSM
           43017]
 gi|256585855|gb|ACU96988.1| site-specific recombinase XerD [Saccharomonospora viridis DSM
           43017]
          Length = 354

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 86/190 (45%), Gaps = 24/190 (12%)

Query: 133 QALTLVDNVLLHTSHETKW---IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-- 187
           +ALTL +   + +S + +    +  R+ AIL LL   G R+SE       +I   + T  
Sbjct: 149 EALTLREAPAVRSSGQLRADQRLSLRDEAILRLLVESGPRVSELCGANRSDIRVHEETGT 208

Query: 188 --LRIQGKGDKIRIVPLLPSVRKAILEY--------------YDLCPFDLNLNIQLPLFR 231
             L ++GKG K R +PL     + I  Y              +D+       +    LF 
Sbjct: 209 PVLHVRGKGRKDRDLPLSKPTVEVIERYLAEERPAPPTPQRPHDMVERRRIDDAAGALFV 268

Query: 232 GIRGKPLNPGVFQRYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
            +RG  L+P   QR + R  + +LG     T H+LRH+  T L   G D+ ++  I GH 
Sbjct: 269 SVRGWRLSPRDVQRMVQRYAKEFLGR--RATPHSLRHTALTVLARAGVDIATVAQIAGHA 326

Query: 291 RLSTTQIYTN 300
            LSTT +Y +
Sbjct: 327 SLSTTSVYMD 336


>gi|229157770|ref|ZP_04285845.1| Integrase/recombinase (XerC/CodV family) [Bacillus cereus ATCC
           4342]
 gi|228625727|gb|EEK82479.1| Integrase/recombinase (XerC/CodV family) [Bacillus cereus ATCC
           4342]
          Length = 323

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 135/299 (45%), Gaps = 50/299 (16%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS------------ 76
           + LS+ T++SY+    Q L   A Y E ++ I  + ++    IR +I             
Sbjct: 18  KHLSRKTIRSYD----QTLKLFASYLERELKITDVDKVKPLHIRTYIKYLRERGKYTFTS 73

Query: 77  ----------KRRT---QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
                      RRT   + I + ++   L  IK F  +L+  +   ++ I N+ ++K   
Sbjct: 74  NTASEQINYPTRRTDYGKTISETTIANYLRNIKVFFNFLEAEEDIAKNPISNIESIK--- 130

Query: 124 SLPRALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
             P+   +++ L  VD +  +L++   + +   R+  ++ L+   G+R  E  S+  +++
Sbjct: 131 --PQ--RKQKILLSVDEIKKVLYSIDISTFHGFRSYVMIKLILDTGIRAGECCSMQAEDL 186

Query: 182 -MDDQSTLRIQGKGDKIRIV---PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
            + ++S L    K  K R V    ++ +  K  L+Y D        +    LF  IRG  
Sbjct: 187 DIKNKSILITNPKNKKQRYVYFSNIMANDLKRWLKYRD------RFSDAEYLFPTIRGTM 240

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           LN   F+  IR + + + +    T H LR++FA + + NGGD  S+  +LGH  +  TQ
Sbjct: 241 LNVNNFEASIRSIGKKVRVHF--TPHQLRNNFAKYYILNGGDWFSLSRVLGHSSVEVTQ 297


>gi|224540991|ref|ZP_03681530.1| hypothetical protein CATMIT_00142 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526090|gb|EEF95195.1| hypothetical protein CATMIT_00142 [Catenibacterium mitsuokai DSM
           15897]
          Length = 417

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 125/280 (44%), Gaps = 28/280 (10%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE--IRAFISKRRTQKIGDRSL 88
           LSK T + Y    R  LIFL +  ++ IT  +   LS     IR F        +  +++
Sbjct: 129 LSKSTKKHY---IRISLIFLDYLNQKGITDVSYIDLSICNDYIRTFTG------MSFKTI 179

Query: 89  KRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++ + G++ FL+YL +  +  +  +++++M  + KS  +P    E +        LL   
Sbjct: 180 EQHICGLRYFLRYLNEENVLESDVASLIHMPAISKSTKIPSVWTEDEI-----KKLLQAI 234

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205
                I  R+ A++ L    GLRIS+  +L   N   ++  L I Q K  K   +P+  +
Sbjct: 235 DRNSPIGKRDYAMIVLACILGLRISDIKNLKFDNFNWEEKKLSIIQHKTKKPLTLPIPDA 294

Query: 206 VRKAILEY-------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           V  A+++Y       Y    F + L   +P F  +  +         Y+++ +  L    
Sbjct: 295 VGWAVIDYIKNGRPKYYESKF-IFLK-HMPPFGSLSDENHLSDRIHFYMKKAKIPLNKNC 352

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
               H+LRH+ A+ LL  G +L  I SILGH     T IY
Sbjct: 353 HRGFHSLRHTSASMLLDAGVELPVITSILGHSSTDITSIY 392


>gi|89147640|gb|ABD62679.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 4/66 (6%)

Query: 238 LNPGVFQRYIRQ--LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           ++    Q+ +R   LR  +  P   T H+LRHSFATHLL  G D+R++Q  LGH  + TT
Sbjct: 99  IDESAMQKAMRAALLRSRISKP--ATCHSLRHSFATHLLERGADIRTVQEQLGHSDVRTT 156

Query: 296 QIYTNV 301
           QIYT+V
Sbjct: 157 QIYTHV 162


>gi|308185145|ref|YP_003929278.1| integrase/recombinase (xerD) [Helicobacter pylori SJM180]
 gi|308061065|gb|ADO02961.1| integrase/recombinase (xerD) [Helicobacter pylori SJM180]
          Length = 355

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 127/283 (44%), Gaps = 43/283 (15%)

Query: 48  IFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKR 105
           +FL F Y  + + +++ R LS  ++  F+ +   Q     S+ + +  ++ F  YL +K+
Sbjct: 77  LFLFFEYFRDNLKLRSFRMLSEEQVINFLFEL-AQNRKPSSMAKYVMYLRQFFDYLDRKK 135

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
               +  + N+   K   SLPR LN K   + +  +L +    T   + RN  +L ++  
Sbjct: 136 HYNFDFALKNLAFAKTKESLPRHLNYKDLKSFLKTLLEYKP--TTSFEKRNKCVLLIVIL 193

Query: 166 CGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
            GLR  E L++  ++I  ++   ++ IQGKG K R       ++K++LE        L+L
Sbjct: 194 GGLRKCEVLNIELKHIQVEEQNYSILIQGKGRKERK----AYIKKSLLE--------LSL 241

Query: 224 NIQLP------------LFRGIRGKPLN--------PGVFQRYIRQLRRYLGLPLSTTAH 263
           N  L             LF+  + K  N        P +F+  + Q++ Y      T  H
Sbjct: 242 NAWLSDDCRLKYFNGAYLFKKDKQKSQNSLTLYNFIPLIFK--LAQIKHYK--QYGTGLH 297

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
             RHSFAT +     DL      LGH  L +T+IY +   ++ 
Sbjct: 298 LFRHSFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHN 340


>gi|294787223|ref|ZP_06752476.1| putative phage integrase family protein [Parascardovia denticolens
           F0305]
 gi|315227229|ref|ZP_07869016.1| possible integrase [Parascardovia denticolens DSM 10105]
 gi|294484579|gb|EFG32214.1| putative phage integrase family protein [Parascardovia denticolens
           F0305]
 gi|315119679|gb|EFT82812.1| possible integrase [Parascardovia denticolens DSM 10105]
          Length = 280

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 119/283 (42%), Gaps = 51/283 (18%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W++ L I RG +  T++++  +  +  + L          + + Q+S  +I  ++ +   
Sbjct: 20  WVKYLRI-RGCTPATIENWWYNVSRLALILN---------KPVYQISDEDIIDYMDR--- 66

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +    ++ + +   SF  YL    +  ++ +  +  +K+     R  + +Q       
Sbjct: 67  -GLSANGIRNNRNAFNSFFDYLITAGLREDNPLAALPKVKRDKHKMRPASRQQV-----E 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIR 198
             LH        D     ++ +L   G+R SE   +  ++++  D  +T+ I GKGDK R
Sbjct: 121 KGLHDP------DPTARLMVMMLADLGVRRSELAQIRKEDLIQEDKYTTIIIHGKGDKDR 174

Query: 199 IVPL---LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           I+PL   L  +  A+ + Y              LF G     ++P    RY+++      
Sbjct: 175 ILPLSQRLQQILTAMPDGY--------------LFPGRFHGHVHPDTVYRYVKRA----- 215

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                T H +R  FAT L    GD   +Q +LGH  L+TTQ Y
Sbjct: 216 --TGATPHAIRRRFATDLWHATGDAVKVQGMLGHESLATTQAY 256


>gi|291326772|ref|ZP_06125804.2| putative integrase/recombinase y4rA [Providencia rettgeri DSM 1131]
 gi|291312880|gb|EFE53333.1| putative integrase/recombinase y4rA [Providencia rettgeri DSM 1131]
          Length = 322

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 92/185 (49%), Gaps = 11/185 (5%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA--LSLTPQNI 181
           SLP++L+  +        LL++  +T  I  R  A++      GLRI E   LSL   + 
Sbjct: 125 SLPKSLSTDEI-----EQLLNSLGQTDPIGLRADAMVRCALDLGLRIGEIARLSLDDIDW 179

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNP 240
           +    TLR + KG +  ++PL  +   AI  Y  +  P  L+  +     +  R +P++ 
Sbjct: 180 VSGTITLR-RTKGRRDDVMPLPVTTGNAIAAYLQNGRPKTLHREV-FASHKTPRERPISR 237

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            V    IRQ+    GL   T+AH LRH+ A  LL+ G  ++ I  IL H  L+ T+IY  
Sbjct: 238 SVVSIAIRQVYTRAGLQY-TSAHLLRHTMANRLLATGASIKDIADILRHRSLNATRIYAK 296

Query: 301 VNSKN 305
           ++S+N
Sbjct: 297 LDSRN 301


>gi|295692920|ref|YP_003601530.1| integrase/recombinase [Lactobacillus crispatus ST1]
 gi|295031026|emb|CBL50505.1| Integrase/recombinase [Lactobacillus crispatus ST1]
          Length = 112

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 34/47 (72%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           G+      H LRHSFAT +L+NG DLRS+Q +LGH  LS TQIYT+V
Sbjct: 47  GISGKVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHV 93


>gi|326943329|gb|AEA19224.1| Phage integrase [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 347

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 123/287 (42%), Gaps = 41/287 (14%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T + Y  D   FL ++      K +I TI++LS+ E+  +  +  ++K    +L+R 
Sbjct: 62  SERTKKLYLHDLSHFLRYI------KESIGTIKELSHNEMEIYFYQL-SKKYAATTLRRK 114

Query: 92  LSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
            + ++ FLKY+      ++  S+ L   +++K   + R L  ++      N +L T  +T
Sbjct: 115 KTVVQQFLKYVYDNNGLSDNFSSRLKKVSVRKEELINRDLFPEEV-----NEILDTLKKT 169

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPS 205
            +      ++ +LL   GLRI E  +    ++    S     LR+ GKG+K R V +   
Sbjct: 170 NFF---MYSLFFLLTTTGLRIEEVANTKWADLAFHSSLNVYLLRVVGKGNKTREVRIFED 226

Query: 206 VRKAILEYYDLCPF--------DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           V        D+C           L+ +          G         +Y+ +      LP
Sbjct: 227 VLD------DICRLRQLRKQTSQLDASSISAFLPKANGSHYRADYLSKYVAEKIEETNLP 280

Query: 258 L------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                    T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y
Sbjct: 281 FLRYRKDRITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERY 327


>gi|44004580|ref|NP_982007.1| Tn554-related, transposase A [Bacillus cereus ATCC 10987]
 gi|42741646|gb|AAS45091.1| Tn554-related, transposase A [Bacillus cereus ATCC 10987]
          Length = 519

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 105/229 (45%), Gaps = 31/229 (13%)

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
           K+  R++ R ++  KSFL ++ K K +   N+L ++  +K   +      +Q  T   N+
Sbjct: 278 KLRGRNMGRPMNYSKSFLHHINKNKPSI-RNVLKVKEPRKRIQILTKEQVRQTFTATTNI 336

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-----LRIQGK--- 193
                        R++ ++ LL+  GLRI EALSL  ++ + D        LR +G+   
Sbjct: 337 -------------RDAFLIQLLFETGLRIGEALSLYLEDFIFDYKKGHRIRLRDRGELEN 383

Query: 194 GDKIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRY 246
           G K++       V + +++ YD      +   D+  N      RG   G+P+N    +  
Sbjct: 384 GAKLKTGEREIFVSQHLMDLYDDYLYEIIDELDIETNFVFIKLRGRNMGRPMNYSDVESL 443

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            ++LR+   + +    H LRH+ AT       D++ +Q  LGH ++ TT
Sbjct: 444 FKRLRKKTKIDIH--PHLLRHTHATIYYQETKDIKQVQERLGHAQIQTT 490


>gi|331004356|ref|ZP_08327830.1| hypothetical protein HMPREF0491_02692 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411160|gb|EGG90577.1| hypothetical protein HMPREF0491_02692 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 352

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 123/263 (46%), Gaps = 34/263 (12%)

Query: 58  ITIQTIRQLSYTEIRAFIS--KRRT---QKIGDR--SLKRSLSGIKSFLKYLKKRKITTE 110
           I + ++  LS T+I  ++   K R    +KI ++  ++KR +S +KS  KY  + +  +E
Sbjct: 76  IPLSSLESLSVTDIEEYMEYLKYRDTDGKKISNKENAVKRKISTLKSVFKYFYRVEKLSE 135

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTL-VDNVLL---------------HTSHETKWIDA 154
                  N+ +   LP+ L+ K+ + L +D V +                  H    I  
Sbjct: 136 -------NIMERVQLPK-LHSKEIIRLDIDEVAMMIDEAENGEGLSERQKAYHNKTKI-- 185

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A+L LL G G+R+SE + L   ++    + + I  KG K   +     V++A+  Y+
Sbjct: 186 RDVALLSLLLGTGIRVSECVGLNISDVDFKHNGILIHRKGGKEVTIYFSDEVKEALQNYF 245

Query: 215 DLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
           D     L  +  +  LF  ++ K L+    ++ +++  + +      T H LR ++ T+L
Sbjct: 246 DERVLILEESGHEGALFLSMQNKRLSVRSVEKLVKKYAKIISPLKKITPHKLRSTYGTNL 305

Query: 274 LSNGGDLRSIQSILGHFRLSTTQ 296
               GD+  +  +LGH  ++TT+
Sbjct: 306 YKETGDIYLVADVLGHSDVNTTK 328


>gi|223369834|gb|ACM88786.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 44/69 (63%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           IR   L+    Q+ IR+     G+    ++HT RH FATHLL +G D+R++Q +LGH  +
Sbjct: 94  IRRHHLHETRAQKAIRRAALASGIRKRISSHTFRHCFATHLLESGYDIRTVQELLGHADV 153

Query: 293 STTQIYTNV 301
           STT IYT+V
Sbjct: 154 STTMIYTHV 162


>gi|229099925|ref|ZP_04230847.1| Integrase-recombinase [Bacillus cereus Rock3-29]
 gi|228683470|gb|EEL37426.1| Integrase-recombinase [Bacillus cereus Rock3-29]
          Length = 390

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 68/153 (44%), Gaps = 10/153 (6%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           N  IL  L   G RI E  +   +++  D +  L++ GKGDK+R + +   + + I E  
Sbjct: 218 NYTILLALASTGARIQELCTARVKDLHYDGKYWLKVTGKGDKVRELFIPEHLFQCISEMR 277

Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266
               F   L+   + PLF   RG   NP      +  + +   L          TAHT R
Sbjct: 278 RRRGFQTILDRGDECPLFVNQRGNFYNPKTLSNQVTDMIKKTNLDFLKYRENPVTAHTFR 337

Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
           H+FA   +  G  DL  +   LGH  + TT+IY
Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370


>gi|116494901|ref|YP_806635.1| site-specific tyrosine recombinase XerS [Lactobacillus casei ATCC
           334]
 gi|116105051|gb|ABJ70193.1| tyrosine recombinase XerC subunit [Lactobacillus casei ATCC 334]
          Length = 370

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 74/341 (21%), Positives = 139/341 (40%), Gaps = 76/341 (22%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFIS-------- 76
           ++  TL  Y    ++FL +L      A  + + + +  +  LS  + +AF++        
Sbjct: 33  IADSTLYQYLHFYQEFLNWLINSGVTAASSPQTVPLTVLEHLSLRDAQAFMAYLLERPSK 92

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES-------NILNMRNLKKSNSLPRAL 129
               +++  RS+   L GIK+  ++L +              N+ N   LK         
Sbjct: 93  THHNKRMTRRSVALRLVGIKALYRFLTEESEPHADGEPYFYRNVWNKVKLKTHTETASYR 152

Query: 130 NEK-QALTLVDNVLLHTSHETKWID-------------------ARNSAILYLLYGCGLR 169
           N K Q +  VD      +   +W+D                    RN A++ LL+G G+R
Sbjct: 153 NHKLQEMLFVDG---EDAKFLQWLDQSYAQQLPAKPRRYFEATKVRNLAMIALLFGSGVR 209

Query: 170 ISEALSLTPQNIMDDQSTLRIQGKG---DKIRIVPLL-PSV------RKAILEYYDLCPF 219
           +SE +++  +++  D+ T+++  KG   D++     + P V      R AI+ Y      
Sbjct: 210 VSELVNMNLEDLNMDRHTVQVVRKGNFQDRVNFADWIDPYVQAYLTQRAAIIGYQKPTS- 268

Query: 220 DLNLNIQLPLFRGIRGKPLN-------PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                   PLF  + G+ +N          F+RY     R       +T H  RH+  T+
Sbjct: 269 --------PLFVTVVGQKINRIRQNTIEAFFKRYTTDYGR------PSTPHKARHTLGTN 314

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           + +   D++ +   LG    S T +Y N++ K+G + + E+
Sbjct: 315 IYTVTKDVQQVADQLGQTTTSATDLYINLSDKSGKEALREV 355


>gi|227535100|ref|ZP_03965149.1| site-specific tyrosine recombinase XerS [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|227187315|gb|EEI67382.1| site-specific tyrosine recombinase XerS [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
          Length = 370

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 63/306 (20%), Positives = 128/306 (41%), Gaps = 58/306 (18%)

Query: 54  TEEKITIQTIRQLSYTEIRAFIS--------KRRTQKIGDRSLKRSLSGIKSFLKYLKKR 105
           + + + +  +  LS  + +AF++            +++  RS+   L GIK+  ++L + 
Sbjct: 62  SPQTVPLTVLEHLSLRDAQAFMAYLLERPSKTHHNKRMTRRSVALRLVGIKALYRFLTEE 121

Query: 106 KITTES-------NILNMRNLKKSNSLPRALNEK-QALTLVDNVLLHTSHETKWID---- 153
                        N+ N   LK         N K Q +  VD      +   +W+D    
Sbjct: 122 SEPHADGEPYFYRNVWNKVKLKTHTETASYRNHKLQEMLFVDG---EDAKFLQWLDQSYA 178

Query: 154 ---------------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG---D 195
                           RN A++ LL+G G+R+SE +++  +++  D+ T+++  KG   D
Sbjct: 179 QQLPAKPRRYFEATKVRNLAMIALLFGSGVRVSELVNMNLEDLNMDRHTVQVVRKGNFQD 238

Query: 196 KIRIVPLL-PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-------PGVFQRYI 247
           ++     + P V+  + +   +  +    +   PLF  + G+ +N          F+RY 
Sbjct: 239 RVNFADWIDPYVQAYLTQRAAIIGYQKPTS---PLFVTVVGQKINRIRQNTIEAFFKRYT 295

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
               R       +T H  RH+  T++ +   D++ +   LG    S T +Y N++ K+G 
Sbjct: 296 TDYGR------PSTPHKARHTLGTNIYTVTKDVQQVADQLGQTTTSATDLYINLSDKSGK 349

Query: 308 DWMMEI 313
           + + E+
Sbjct: 350 EALREV 355


>gi|300956936|ref|ZP_07169191.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 175-1]
 gi|300316283|gb|EFJ66067.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 175-1]
 gi|323974156|gb|EGB69289.1| phage integrase [Escherichia coli TW10509]
          Length = 108

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 32/41 (78%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 47  TCHTFRHSFATHLLQAGRDIRTVQELLGHNDVKTTQIYTHV 87


>gi|319900072|ref|YP_004159800.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319415103|gb|ADV42214.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 431

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 20/151 (13%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYY 214
            L+GC  GL   +  +LT   I  MD      I  +  K R+   VPL+   ++ I  Y 
Sbjct: 252 FLFGCFTGLSYIDIKTLTHDKIQRMDFDGEEWIITRRTKTRVSSNVPLMEIAKELIERYK 311

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL- 273
            L   DL      P+       P N  V  R+++Q+ +  G+      H  RH+FAT + 
Sbjct: 312 GLAGGDL----VFPM-------PSNS-VCNRHLKQIAKACGIHKEIGFHLSRHTFATTVY 359

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           L NGG + ++  ILGH  +STTQIY  V ++
Sbjct: 360 LCNGGTIEALSKILGHKHISTTQIYAEVTNR 390


>gi|154000910|gb|ABS57023.1| integrase [uncultured bacterium]
          Length = 158

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 40/60 (66%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            F+R  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 99  TFRRAFKRAVEQAGIAKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|62815912|emb|CAH17565.1| Transposase A [Staphylococcus aureus]
          Length = 361

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 99/217 (45%), Gaps = 37/217 (17%)

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
            K FL ++ K +   + N+L +R  KK     R L  K+   ++D    HT         
Sbjct: 139 FKGFLHHVNKGRY--QKNVLKLRVKKKQ---IRTLRSKEVKQIIDAC--HTK-------- 183

Query: 155 RNSAILYLLYGCGLRISEALSL--------------TPQNIMDDQSTLRIQGKGDKIRIV 200
           R+  IL L+Y  GLRI E LSL              TP+++  +++ ++++ K   I + 
Sbjct: 184 RDKLILMLMYEGGLRIGEVLSLRLEDIVTWDNQIHLTPRDVNVNEAYIKLR-KERTIHVS 242

Query: 201 PLLPSVRKA--ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
             L S+     I EY +    D    + + L  G  GKPL        +R++ +  G+  
Sbjct: 243 KELMSLYTDYLIYEYSEELEHDY---VFISLKEGYFGKPLKYQSVLGLVRRIVKRTGIEF 299

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             T+H LRH+ AT L+  G D+  +Q  LGH  + TT
Sbjct: 300 --TSHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTT 334


>gi|13488299|ref|NP_085850.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14028099|dbj|BAB54691.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 416

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 90/204 (44%), Gaps = 38/204 (18%)

Query: 122 SNSLPRALN---EKQALTLVDNV---LLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           + ++PR  N    K A+TL  +    LL +S  +     R+ A+L  L   GLR  E L 
Sbjct: 214 AGTIPRPANRRLAKLAVTLSKSEITDLLASSDGSLPSARRDHAMLRCLADLGLRGCEVLK 273

Query: 176 LTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY-------------YDLC--PF 219
           LT  +I     TLRI +GK  +  ++PL     +AI EY             +  C  PF
Sbjct: 274 LTLSDIDWRNGTLRIVKGKSRRTDMLPLPFETGRAIAEYLSKERPATSNRALFVRCKAPF 333

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
           D               KPL+  V    ++   R  G    T  H LRHS A+ LL +G  
Sbjct: 334 D---------------KPLSTVVVHNIVKAAYRRCGWS-HTRPHILRHSVASQLLRDGAP 377

Query: 280 LRSIQSILGHFRLSTTQIYTNVNS 303
           L+ I  +L H  L+T+ +Y  V++
Sbjct: 378 LKEISDVLRHRSLNTSMVYLKVDA 401


>gi|260061988|ref|YP_003195068.1| tyrosine type site-specific recombinase [Robiginitalea biformata
           HTCC2501]
 gi|88783550|gb|EAR14721.1| tyrosine type site-specific recombinase [Robiginitalea biformata
           HTCC2501]
          Length = 423

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 16/156 (10%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD 215
            ++ C  GL   +   LTP NI+     +L IQ    K R    +PLLP+  + I+E Y+
Sbjct: 249 FVFCCFTGLAYIDVKKLTPNNIVKHIDGSLWIQSARQKTRSKLGIPLLPTALE-IIEKYE 307

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
             P  +N +  +P+    R           Y++++    G+    T H  RH+FAT + L
Sbjct: 308 DHPKVVNGDCVIPVLSNQRSNA--------YLKEIADICGITKHLTTHLARHTFATTVTL 359

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           SNG  + ++  +LGH  L  TQ Y  + +K   D M
Sbjct: 360 SNGVPIETVGKLLGHRNLRATQHYAKIVNKKVADDM 395


>gi|56410450|ref|YP_145824.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
 gi|56378347|dbj|BAD74256.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
          Length = 304

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 137/301 (45%), Gaps = 31/301 (10%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +L E   +LQ    E+G S+ T+ SY  D   F   L    ++ +T   IR+     I+ 
Sbjct: 1   MLNEYVAYLQ----EKGASRNTIISYTNDLNIFFHDLHIRPDDYVTPADIRKW----IQH 52

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA---LN 130
            ++    + +   ++ R L+ ++SF  +  +     ++ + ++++LK ++        L 
Sbjct: 53  MLNPEEGKPLAISTINRRLNSLRSFYAWAVEHHYIEQNPMKDIQDLKTADEDHEKIMWLT 112

Query: 131 EKQALTLVDNVLLHTSHETKWIDA-----RNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           E++   L+   +     +++ +D      R+ A++YLL   GLR+ E  +L   ++  + 
Sbjct: 113 EEEFEDLLQR-MRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEM 171

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL------N 239
             +RI GKG K+R VP + ++  A LE  D   F   +  + P    +   P       +
Sbjct: 172 KRIRIVGKGMKVRTVP-ISNILLAELE--DWLEFRAEMAKKKP---HVAASPYVFYSQRS 225

Query: 240 PGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLSTTQI 297
           P    R I+++     LP    T H  RH+F   +L +   D+  ++ + GH  ++TT  
Sbjct: 226 PKFSVRGIQRMIESYSLPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSR 285

Query: 298 Y 298
           Y
Sbjct: 286 Y 286


>gi|330860733|emb|CBX71025.1| integrase [Yersinia enterocolitica W22703]
          Length = 332

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 30/189 (15%)

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           ++N+R   +       LN+ Q  +L+D   LH + E        + I+ L    G R +E
Sbjct: 138 LMNIREFDQPEREMAWLNDDQIDSLLDASDLHGNPEL-------TLIVRLCLSTGARWNE 190

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
              +    I  ++ T  I  KG K R VPL   + +A+  +                   
Sbjct: 191 IAKIKASQISPNKITF-INTKGKKNRTVPLSEEMYQALAAH------------------- 230

Query: 233 IRGKPLNPGVFQRYIRQLR-RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
            +GK   P  ++++ R +R   + LP+    H LRH+FA+H +  GG++  +Q ILGH  
Sbjct: 231 -KGKAFAP-CYKQFYRVIRLAQIELPVGQMTHVLRHTFASHFMMAGGNIIVLQRILGHSD 288

Query: 292 LSTTQIYTN 300
           +  T  Y++
Sbjct: 289 IRVTMRYSH 297


>gi|256840487|ref|ZP_05545995.1| integrase [Parabacteroides sp. D13]
 gi|256737759|gb|EEU51085.1| integrase [Parabacteroides sp. D13]
          Length = 431

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 20/151 (13%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYY 214
            L+GC  GL   +  +LT   I  MD      I  +  K R+   VPL+   ++ I  Y 
Sbjct: 252 FLFGCFTGLSYIDIKTLTHDKIQRMDFDGEEWIITRRTKTRVSSNVPLMEIAKELIERYK 311

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL- 273
            L   DL      P+       P N  V  R+++Q+ +  G+      H  RH+FAT + 
Sbjct: 312 GLAGGDL----VFPM-------PSNS-VCNRHLKQIAKACGIHKEIGFHLSRHTFATTVY 359

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           L NGG + ++  ILGH  +STTQIY  V ++
Sbjct: 360 LCNGGTIEALSKILGHKHISTTQIYAEVTNR 390


>gi|94442302|dbj|BAE93650.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           PS  K+ +  Y    F  N     P    ++   ++    Q+ I++      + +   +H
Sbjct: 67  PSAAKSWMWQY---AFPSNQRCFAPDLGTMKRHRVHQTSVQKAIKRAVTRCNINMRVGSH 123

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 124 AFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|317495285|ref|ZP_07953655.1| phage integrase [Gemella moribillum M424]
 gi|316914707|gb|EFV36183.1| phage integrase [Gemella moribillum M424]
          Length = 299

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 141/300 (47%), Gaps = 18/300 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S +LL + + +L+N   ++  S  T+ SY+ D R+  ++L    E   +I+    L+  
Sbjct: 1   MSEKLLNDFREYLEN---KKKFSMNTINSYDRDLRKIFLYLV---EMGYSIEEYSWLNEE 54

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRA 128
            I  ++   + +     +L R++S +  F++YL   ++   SN +N+  ++ K +     
Sbjct: 55  LITRYLGYLKEKDYSSATLSRTISTVHIFIEYLYNTRLI--SNKINIDVHVDKDDQHNLI 112

Query: 129 LNEKQALTLVDNVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           +  +Q +  + ++      +TK W+D R+ AI  L Y  G++ +E ++L  +++      
Sbjct: 113 IFTRQEIAKILDI------DTKNWMDYRDKAIFELSYSIGIKPTECINLELKDVNTTIGY 166

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRY 246
           L+ + K +  R V L      AI  Y +    +  ++  +  LF    G+ ++   F + 
Sbjct: 167 LKYKKK-EGYRTVALNKESTDAIKNYIEELKKEYPDIEDESKLFLNHDGEGISRQGFWKI 225

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
            ++ ++ LGL         R+S A HLL +      +Q +LG   + + ++Y N   K G
Sbjct: 226 FKKRQQDLGLEKELNTMNFRNSLAIHLLEDKVPAEEVQELLGLKNIHSLKLYFNNLKKPG 285


>gi|298484397|ref|ZP_07002556.1| integrase [Bacteroides sp. D22]
 gi|298269461|gb|EFI11063.1| integrase [Bacteroides sp. D22]
          Length = 431

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 71/151 (47%), Gaps = 20/151 (13%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYY 214
            L+GC  GL   +  +LT   I  MD      I  +  K R+   VPL+   ++ I  Y 
Sbjct: 252 FLFGCFTGLSYIDIKTLTHDKIQRMDFDGEEWIITRRTKTRVSSNVPLMEIAKELIERYK 311

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL- 273
            L   D       P+       P N G   ++++Q+ +  G+      H  RH+FAT + 
Sbjct: 312 GLAGGDF----VFPM-------PSN-GTCNKHLKQIAKACGISKEIGFHLSRHTFATTVY 359

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           L NGG + ++  ILGH  +STTQIY  V +K
Sbjct: 360 LCNGGTIEALSKILGHKHISTTQIYAEVTNK 390


>gi|228943081|ref|ZP_04105576.1| Phage integrase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228975868|ref|ZP_04136397.1| Phage integrase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228783831|gb|EEM31881.1| Phage integrase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228816610|gb|EEM62740.1| Phage integrase [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 351

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 123/287 (42%), Gaps = 41/287 (14%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T + Y  D   FL ++      K +I TI++LS+ E+  +  +  ++K    +L+R 
Sbjct: 66  SERTKKLYLHDLSHFLRYI------KESIGTIKELSHNEMEIYFYQL-SKKYAATTLRRK 118

Query: 92  LSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
            + ++ FLKY+      ++  S+ L   +++K   + R L  ++      N +L T  +T
Sbjct: 119 KTVVQQFLKYVYDNNGLSDNFSSRLKKVSVRKEELINRDLFPEEV-----NEILDTLKKT 173

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPS 205
            +      ++ +LL   GLRI E  +    ++    S     LR+ GKG+K R V +   
Sbjct: 174 NFF---MYSLFFLLTTTGLRIEEVANTKWADLAFHSSLNVYLLRVVGKGNKTREVRIFED 230

Query: 206 VRKAILEYYDLCPF--------DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           V        D+C           L+ +          G         +Y+ +      LP
Sbjct: 231 VLD------DICRLRQLRKQTSQLDASSISAFLPKANGSHYRADYLSKYVAEKIEETNLP 284

Query: 258 L------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                    T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y
Sbjct: 285 FLRYRKDRITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERY 331


>gi|89147379|gb|ABD62550.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 41/69 (59%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           IR   +     Q  +++      L    T H LRHSFATHLL +G D+R++Q +LGH  +
Sbjct: 94  IRRHHVTDAAVQTAVKRAAASAALQKRVTPHVLRHSFATHLLESGSDIRTVQELLGHKDV 153

Query: 293 STTQIYTNV 301
           STT IYT+V
Sbjct: 154 STTVIYTHV 162


>gi|89147440|gb|ABD62580.1| integrase [uncultured bacterium]
          Length = 164

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 71/136 (52%), Gaps = 23/136 (16%)

Query: 185 QSTLRIQGKGDKIRIVP--LLPSVR-----KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
           +  LRIQ +  +IR+    LLP  R     +A+   Y   P +L      P     R   
Sbjct: 32  EPQLRIQMEKVRIRLEENLLLPGFRGASMPEALERKYPGAPKELMWQYMFP----ARKPA 87

Query: 238 LNP--GVFQRYIRQ---LRRYLGLPL-------STTAHTLRHSFATHLLSNGGDLRSIQS 285
           L+P  G  +++ R    L++ +   +       + + HTLRHSFATHLL +G D+R++Q 
Sbjct: 88  LDPRTGTLRQHYRHESYLQKTVKFAIRKSQVSKNASCHTLRHSFATHLLEDGYDIRTVQE 147

Query: 286 ILGHFRLSTTQIYTNV 301
           ++GH  ++TT IYT+V
Sbjct: 148 LMGHKNVNTTMIYTHV 163


>gi|308067605|ref|YP_003869210.1| Site-specific recombinase XerC [Paenibacillus polymyxa E681]
 gi|305856884|gb|ADM68672.1| Site-specific recombinase XerC [Paenibacillus polymyxa E681]
          Length = 281

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 118/267 (44%), Gaps = 32/267 (11%)

Query: 41  CDTRQFLIFLAFY---TEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR--SLKRSLSGI 95
           C  R  L F+A+Y   TE  +         + E+     K+  Q       ++ R ++ +
Sbjct: 23  CYIRDVLQFIAWYRGKTENGLD-------QWIELDGIEYKKYLQSTNQAILTINRKIASV 75

Query: 96  KSFLKYLKKRK-ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
             F +++ ++  I  E +I  +RN  K     + L EK    L + +     H     + 
Sbjct: 76  NVFAQWMHQQGYIKEEIHIEAVRN--KVVRQYKGLAEKDLWKLRNEI-----HRMG--NR 126

Query: 155 RNSAILYLLYGCGLRISE--ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
            +  ++ LL G G+R+SE   + L    I + +  L++ GKG+  R +PL   VRKAI  
Sbjct: 127 MHICMIELLLGTGIRVSELVGIKLKDIEISERKGLLKVFGKGNSFRTIPLNKDVRKAITR 186

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           Y ++ P   +  + +     +    +N  +  +Y  ++       +  T H LRH+    
Sbjct: 187 YLEVRPHSESEYLCIGQRGSLERNAINL-ILNKYGDRIN------VKVTPHMLRHTLGYK 239

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYT 299
           L+     L +IQ ILGH  ++TT IYT
Sbjct: 240 LVKT-TPLTTIQQILGHDHVATTNIYT 265


>gi|332161996|ref|YP_004298573.1| Integrase family protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666226|gb|ADZ42870.1| Integrase family protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 314

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 30/189 (15%)

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           ++N+R   +       LN+ Q  +L+D   LH + E        + I+ L    G R +E
Sbjct: 120 LMNIREFDQPEREMAWLNDDQIDSLLDASDLHGNPEL-------TLIVRLCLSTGARWNE 172

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
              +    I  ++ T  I  KG K R VPL   + +A+  +                   
Sbjct: 173 IAKIKASQISPNKITF-INTKGKKNRTVPLSEEMYQALAAH------------------- 212

Query: 233 IRGKPLNPGVFQRYIRQLR-RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
            +GK   P  ++++ R +R   + LP+    H LRH+FA+H +  GG++  +Q ILGH  
Sbjct: 213 -KGKAFAP-CYKQFYRVIRLAQIELPVGQMTHVLRHTFASHFMMAGGNIIVLQRILGHSD 270

Query: 292 LSTTQIYTN 300
           +  T  Y++
Sbjct: 271 IRVTMRYSH 279


>gi|320352375|ref|YP_004193714.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320120877|gb|ADW16423.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 344

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 22/173 (12%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           +D     +  L+   GLR  EAL+L  ++I + + T+R+ GKG K RIVP L SVR    
Sbjct: 182 LDPEYRLLFLLMADHGLRKEEALNLQVEDIDEARKTIRVYGKGSKYRIVPFL-SVR---- 236

Query: 212 EYYDLCPFDLNLNIQLP-------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
                  F+  LN  L        +     GKP      ++ + +  +  GL      H 
Sbjct: 237 -------FEEELNKVLSERLEGFLVVNPATGKPYYS--IRKVLTRAAKKAGLSRQVYHHL 287

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQ 316
           LRH+F +     G +  ++Q I+GH  + TT +IYT+V     G+   +I +Q
Sbjct: 288 LRHTFGSLAAEAGMNPYALQRIMGHSNIETTNKIYTHVGLDFVGEEARKIREQ 340


>gi|282850454|ref|ZP_06259833.1| site-specific recombinase, phage integrase family [Veillonella
           parvula ATCC 17745]
 gi|282579947|gb|EFB85351.1| site-specific recombinase, phage integrase family [Veillonella
           parvula ATCC 17745]
          Length = 308

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 25/181 (13%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + LN+ +  TL+ N+ L +     W+       + ++   G+R SEAL+LTP++      
Sbjct: 116 KYLNQFELHTLLVNLKLTSEISWDWL-------ILIIAKTGMRFSEALALTPKDFDFSHQ 168

Query: 187 TLRIQGKGDKIRIVPLLP-----SVRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPL 238
           +L +    D       LP     S+RK  L++  +  F      L    P+F  ++G+  
Sbjct: 169 SLIVDKTWDYKGSGGFLPTKNRSSIRKIQLDWQTIIKFSELIKGLPEDKPIF--VKGRVF 226

Query: 239 NP---GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           N    GV +RY ++L    GLP+  + H LRH+ A+ LL  G  + S+   LGH  ++TT
Sbjct: 227 NSTINGVLERYCKKL----GLPV-ISIHGLRHTHASLLLFAGVSIASVARRLGHASMTTT 281

Query: 296 Q 296
           Q
Sbjct: 282 Q 282


>gi|229170556|ref|ZP_04298204.1| Phage integrase [Bacillus cereus AH621]
 gi|228612905|gb|EEK70082.1| Phage integrase [Bacillus cereus AH621]
          Length = 336

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 118/266 (44%), Gaps = 37/266 (13%)

Query: 53  YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE-- 110
           Y +EK+   TI++LS+ E+  +  +  ++K    +L+R  + ++ FL+Y+      T+  
Sbjct: 68  YIKEKVG--TIQELSHNEMEIYFYEL-SKKYAATTLRRKKTVVQQFLRYVYDNNGLTDDY 124

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
           S  +   ++KK   + R L  ++   ++D  L  T+H          A+ +LL   GLRI
Sbjct: 125 STRIKKVSVKKEALVNRDLFPEEVNEILD-TLKKTNHFM-------YALFFLLTTTGLRI 176

Query: 171 SEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF------- 219
            E  +    +++   S     LR+ GKG+K R V +   V    LE  D+C         
Sbjct: 177 EEVANAKWADLVFHSSLNTYLLRVVGKGNKAREVRIFEDV----LE--DICRLRQLRRQT 230

Query: 220 -DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLRHSFATH 272
             L+++          G         +Y+ +      LP         T HT RH FA +
Sbjct: 231 SKLDVSSTSAFLPKADGSHYRADYLSKYVAEKIEETNLPFLRHRRDRITPHTCRHFFANY 290

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIY 298
           L+  G +L+ I+  LGH  + TT+ Y
Sbjct: 291 LMGKGVELKKIRDYLGHESIMTTERY 316


>gi|154000930|gb|ABS57033.1| integrase [uncultured bacterium]
          Length = 158

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 39/60 (65%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            FQR  ++     G+    T HTLRH FAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 99  TFQRAFKRAVEQAGITKPATPHTLRHPFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|89147516|gb|ABD62618.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 36/47 (76%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           G+    T+H LRH+FATHLL  G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 116 GIEKRITSHALRHAFATHLLEAGTDIRTLQELLGHSDVATTQIYTHV 162


>gi|312139793|ref|YP_004007129.1| phague integrase [Rhodococcus equi 103S]
 gi|311889132|emb|CBH48445.1| putative phague integrase [Rhodococcus equi 103S]
          Length = 341

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/314 (20%), Positives = 122/314 (38%), Gaps = 35/314 (11%)

Query: 19  QNWLQNLEIERGLSKL---TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR-AF 74
           + W     + R  +K    TL++Y  D      FL+  T   ++  ++  ++   ++ AF
Sbjct: 9   EAWFAEFLLHRSTAKPSPHTLKAYRQDFAAISGFLSEQTGVPVSALSVEAITKPSMQQAF 68

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
            S   T ++   S++R  S   +   YL        + +  +   K    +P+AL     
Sbjct: 69  ASFAATHEVA--SIRRCWSTWNTLCDYLFSIDTIVANPMSAVLRPKAPKRIPKALPADAV 126

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL-------TPQNIMDDQST 187
             L+  +    +   +    R+ AI+      G+R SE +++        P         
Sbjct: 127 TRLIQTLQEDDTDGVRPWGERDFAIILTALLTGMRSSELIAVDLGDVRSAPDPSGGSARV 186

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYD-----------------LCPFDLNLNIQLPLF 230
           +R++GKG K R+    P++   +  Y +                   P+  +     PLF
Sbjct: 187 IRVRGKGSKDRVATAEPALVATLTGYLESRIARFPETTKRRVPSGATPWQ-HFRSTDPLF 245

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGL----PLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
            G  G  +  G  Q  + +  R  G+          H  RH+FAT++      + ++  +
Sbjct: 246 VGADGTRITRGTLQYRVLRAYRRAGINGERAKGALTHQFRHTFATNMADENVSIFTLMRM 305

Query: 287 LGHFRLSTTQIYTN 300
           LGH  ++TTQ+YT 
Sbjct: 306 LGHESMNTTQVYTE 319


>gi|215408030|emb|CAS02342.1| integron integrase [uncultured bacterium]
          Length = 150

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 39/59 (66%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+
Sbjct: 92  TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 150


>gi|191638411|ref|YP_001987577.1| site-specific tyrosine recombinase XerS [Lactobacillus casei BL23]
 gi|190712713|emb|CAQ66719.1| Tyrosine recombinase xerC [Lactobacillus casei BL23]
 gi|327382442|gb|AEA53918.1| Site-specific recombinase, phage integrase family [Lactobacillus
           casei LC2W]
 gi|327385640|gb|AEA57114.1| Site-specific recombinase, phage integrase family [Lactobacillus
           casei BD-II]
          Length = 370

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 73/338 (21%), Positives = 142/338 (42%), Gaps = 70/338 (20%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFIS-------- 76
           ++  TL  Y    ++FL +L      A  + + + +  +  LS  + +AF++        
Sbjct: 33  IADSTLYQYLHFYQEFLNWLINSGVTAASSPQTVPLTVLEHLSLRDAQAFMAYLLERPSK 92

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYL-------------------KKRKITTESNILNMR 117
               +++  RS+   L GIK+  ++L                    K K+ T +   + R
Sbjct: 93  THHNKRMTRRSVALRLVGIKALYRFLTEESEPHADGEPYFYRNVWNKVKLKTHTETASYR 152

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLH--TSHETKWIDA---RNSAILYLLYGCGLRISE 172
           N K    L     + + L  +D        +   ++ +A   RN A++ LL+G G+R+SE
Sbjct: 153 NHKLQEMLFVGGEDAKFLQWLDQSYAQQLPAKPRRYFEATKVRNLAMIALLFGSGVRVSE 212

Query: 173 ALSLTPQNIMDDQSTLRIQGKG---DKIRIVPLL-PSV------RKAILEYYDLCPFDLN 222
            +++  +++  D+ T+++  KG   D++     + P V      R AI+ Y         
Sbjct: 213 LVNMNLEDLNMDRHTVQVVRKGNFQDRVNFADWIDPYVQAYLTQRAAIIGYQKPTS---- 268

Query: 223 LNIQLPLFRGIRGKPLN-------PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
                PLF  + G+ +N          F+RY     R       +T H  RH+  T++ +
Sbjct: 269 -----PLFVTVVGQKINRIRQNTIEAFFKRYTTDYGR------PSTPHKARHTLGTNIYT 317

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              D++ +   LG    S T +Y N++ K+G + + E+
Sbjct: 318 VTKDVQQVADQLGQTTTSATDLYINLSDKSGKEALREV 355


>gi|223369854|gb|ACM88796.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 41/64 (64%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L     Q+ ++   R   +  + + HTLRHSFATHLL +G D+R++Q +LGH  + TT I
Sbjct: 99  LAESAVQKMVKGAVRRTEIAKNASCHTLRHSFATHLLESGSDIRTVQELLGHNDVRTTMI 158

Query: 298 YTNV 301
           YT+V
Sbjct: 159 YTHV 162


>gi|14600982|ref|NP_147508.1| tyrosine recombinase XerC/XerD [Aeropyrum pernix K1]
 gi|5104468|dbj|BAA79783.1| tyrosine recombinase XerC/XerD [Aeropyrum pernix K1]
          Length = 362

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 11/151 (7%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           D  ++ I+ +L   GLR+SE LSL   ++   +  +R+ GK  K RIV L P  R  + E
Sbjct: 139 DIIDALIVSMLAETGLRVSELLSLRLSDVDLGRGVVRVVGKYGKERIVFLGPLSRMLLEE 198

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFAT 271
           Y    P   +  I    ++          V++R ++ L +  GL P     H LRH+FAT
Sbjct: 199 YLASNPLPPDSRIIELSYQA---------VYKR-LKSLAKRAGLDPRKVRPHILRHTFAT 248

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             L  G  L ++Q +LGH  +  TQ+Y ++ 
Sbjct: 249 EALRRGMSLAALQRLLGHSDIKVTQLYLHMT 279


>gi|227872383|ref|ZP_03990731.1| possible tyrosine recombinase [Oribacterium sinus F0268]
 gi|227841772|gb|EEJ52054.1| possible tyrosine recombinase [Oribacterium sinus F0268]
          Length = 358

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 110/252 (43%), Gaps = 27/252 (10%)

Query: 67  SYTEIRAFISKRRTQKIG----------DRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
            Y E   + +K++T K G          ++S+KR +S +KSF  YL K +   E+    +
Sbjct: 86  EYMEFLKYRTKKKTGKEGQIEEVEVLNHNKSIKRKISSLKSFFGYLYKTEQIKENKTALL 145

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTS--------HETKWIDARNSAILYLLYGCGL 168
              K S      +++ +    +D V             HE   +  R+ A++ L+ G G+
Sbjct: 146 SLPKLSQEEIVRMDQGEVAQFLDQVESGEDLSKKEKLYHEKNQV--RDLAMMQLMLGTGI 203

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD----LCPFDLNLN 224
           R+SE + L   ++    + +RI  KG K   +     V + +  Y +      P   + N
Sbjct: 204 RVSECVGLNCSDVDFQNNAIRIHRKGGKEVSIYFSDEVEQGLRAYMEERKSKIPAAGHEN 263

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
               LF  ++ K ++    +  +++  + +      T H LR S+ T+L    GD+  + 
Sbjct: 264 ---ALFLSLQNKRMSVRTVELMVKKYAQKVTPLKHITPHKLRSSYGTNLYQETGDIYLVA 320

Query: 285 SILGHFRLSTTQ 296
            +LGH  ++TT+
Sbjct: 321 DVLGHSDVNTTK 332


>gi|308176207|ref|YP_003915613.1| phage integrase family protein [Arthrobacter arilaitensis Re117]
 gi|307743670|emb|CBT74642.1| phage integrase family protein [Arthrobacter arilaitensis Re117]
          Length = 360

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 14/185 (7%)

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           +++   LPR+L   + + L   +  +          R+ A+  L+  CGLR  E L+L  
Sbjct: 168 VREPRRLPRSLESDEVIALFQGLRTY----------RDRAMAGLMLYCGLRAGEVLALRI 217

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGK 236
           +++      L + GKG + R VPL   V   +++ Y L   P      + L      RG 
Sbjct: 218 RDVDIGGRWLLVLGKGSRERRVPLDVDV-AGVIQTYLLAERPESDEQRLFLVAKGANRGL 276

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           PL     +   R  R   G+P     H LRH+F + L ++G DL  ++ +LGH  ++TT 
Sbjct: 277 PLTAAGLRTIFRYHREISGVP-DGHPHALRHTFGSALAASGVDLSIMRELLGHAHVNTTA 335

Query: 297 IYTNV 301
            Y ++
Sbjct: 336 RYIHL 340


>gi|194015373|ref|ZP_03053989.1| site-specific recombinase, phage integrase family protein [Bacillus
           pumilus ATCC 7061]
 gi|194012777|gb|EDW22343.1| site-specific recombinase, phage integrase family protein [Bacillus
           pumilus ATCC 7061]
          Length = 353

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 79/169 (46%), Gaps = 17/169 (10%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIR 198
           LL    +  ++  R+  I+  L     RI E LSLT +N+    ST+       K  + R
Sbjct: 163 LLSAPDQRTFVGFRDYVIMTFLVDSMARIGEILSLTKENVDYASSTVYFSAWDVKTRQGR 222

Query: 199 IVPL----LPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            VPL    +  +++ ++E  D   PF         +F    G+ L    F++ + +    
Sbjct: 223 FVPLERKTMNLIKELLIENEDFESPF---------VFLSNYGEQLETNHFRKQLNRYAEQ 273

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +G+      H  RH+ AT  L NGGD+R +Q++LGH  +   + YT+++
Sbjct: 274 VGITKKVHPHLFRHTGATMYLENGGDIRHLQAMLGHRDMRMVKRYTHLS 322


>gi|258515632|ref|YP_003191854.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257779337|gb|ACV63231.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 335

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 107/227 (47%), Gaps = 11/227 (4%)

Query: 66  LSYTEIRAFISKRRTQKIGDR--SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           ++Y  IR  +     +K G++  ++   +  +K F  +L       E+    +  LK +N
Sbjct: 83  ITYRTIRNNLVLYAIEKWGNQPQTVNMRIRTLKQFFDFLVSEGYLAENPAARVEKLKTAN 142

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           +L  ALN+ Q        LL    +      R+  I+ LL   GLR+SE   L   ++  
Sbjct: 143 TLIVALNKDQV-----RRLLAVPDKDTLTGFRDYTIMLLLLDTGLRLSEISGLRISDLHF 197

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
            ++ +++ GKG K R VPL   ++K + EY      + + +    +F  I   P+     
Sbjct: 198 TENFIKVMGKGAKERTVPLQGKLKKTLREYLQHRGKEPDHDF---VFITIDNNPIKNRTI 254

Query: 244 QRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           Q  +  + +  G+  + T+ HT RH+FA   + NGGD  S+++ILGH
Sbjct: 255 QDRLDIISKKAGVTEIRTSPHTWRHTFARMYILNGGDAFSLKTILGH 301


>gi|254443000|ref|ZP_05056476.1| integron integrase subfamily, putative [Verrucomicrobiae bacterium
           DG1235]
 gi|198257308|gb|EDY81616.1| integron integrase subfamily, putative [Verrucomicrobiae bacterium
           DG1235]
          Length = 485

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 41/179 (22%)

Query: 162 LLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAI-------LEY 213
           L YG GLR+SE   L  +++  +    L + GKG+K R +PL   + K +        E 
Sbjct: 287 LQYGTGLRVSELCRLRVKDLDFELGKVLVVGGKGNKDRALPLPKKLAKELEQQLASAREV 346

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-----RQL---------RRYLGLPLS 259
           ++    D    + LP    +  K    G   ++      R+L         RR+  LP S
Sbjct: 347 FEKDRSDEVAGVYLP--EALERKFSKAGTDWKWFWVWPSRELGVDPRSDVLRRHHVLPRS 404

Query: 260 -----------------TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                             ++H LRHSFATHLL +G +LR++Q ++GH  + TTQ+Y ++
Sbjct: 405 YQAAISRAASKAEIQKRVSSHALRHSFATHLLDSGINLRTLQELMGHKDIKTTQVYLHL 463


>gi|158339522|ref|YP_001520911.1| tyrosine recombinase XerC [Acaryochloris marina MBIC11017]
 gi|158309763|gb|ABW31379.1| tyrosine recombinase XerC [Acaryochloris marina MBIC11017]
          Length = 185

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 3/150 (2%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR-IVPLLPSVRKAILE 212
           AR+ A++ LL+  GLR SE +    ++   +Q  L I GKG   R  + L  S  +AI E
Sbjct: 12  ARDFAMMTLLWEAGLRRSELVGCDVRHFDSEQKRLSILGKGRNEREWIDLTESGVRAISE 71

Query: 213 YYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS-FA 270
           + +L   + L   + + L R   G  L+     R +R L +  G+  +   H +RHS   
Sbjct: 72  WLELREVYGLTEPLFISLDRANWGSRLSGTSVYRIVRALAKKAGVSENFGPHKIRHSGTT 131

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           T+L   GGDLR  Q+   H  L+T + Y +
Sbjct: 132 TYLEMTGGDLRGAQAYSRHANLNTLKFYDD 161


>gi|89147652|gb|ABD62685.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 41/59 (69%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            Q  ++   R +G+    + H+LRHSFAT LL +G D+R++Q +LGH  +STTQIYT+V
Sbjct: 104 IQGALKSALRAVGINRPASCHSLRHSFATQLLESGYDIRTVQELLGHKDVSTTQIYTHV 162


>gi|304393998|ref|ZP_07375922.1| site-specific integrase/recombinase [Ahrensia sp. R2A130]
 gi|303293973|gb|EFL88349.1| site-specific integrase/recombinase [Ahrensia sp. R2A130]
          Length = 367

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 73/144 (50%), Gaps = 6/144 (4%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           L+ GC  R+SE + LT   +      ++I GKGD+ R +P+  ++ + +   +   P  +
Sbjct: 189 LVSGC--RLSEIVELTWPQVEWFADQMKITGKGDRTRTIPITAAMGEILKSVHGHDPLHV 246

Query: 222 NLNIQLPLFRG-IRGK--PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
                +    G ++G+  P+     +   R++R   G+      H LRH+ AT LL + G
Sbjct: 247 FTYEAMKTRDGRVKGERYPITKSGLKTTWRRMRAASGVK-GLRFHDLRHTAATRLLRSTG 305

Query: 279 DLRSIQSILGHFRLSTTQIYTNVN 302
           +LR  Q +LGH  +STTQ Y +V 
Sbjct: 306 NLRLAQMLLGHSDISTTQRYAHVQ 329


>gi|115377467|ref|ZP_01464669.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|310823313|ref|YP_003955671.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365511|gb|EAU64544.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309396385|gb|ADO73844.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 381

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 23/183 (12%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-----QG-----KGDKIRIVP 201
           +D R  A++ L    GLR  E L+L   ++   +  L I     QG     KG + R VP
Sbjct: 194 LDWRIQAMVLLGGDAGLRSGEILALEWTDVDFRRGQLHIRQSEWQGHVTVPKGGRDRRVP 253

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +  + R A L          N +++ P  L+R   G+P       R++ + ++  GLP++
Sbjct: 254 M--TKRLAAL-------LATNRHLKGPRVLYRD-NGQPATRAAVSRWMAKAQKRAGLPVT 303

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRH+F + L   G   ++IQ + GH  LSTTQ Y ++ S    D  + + D+   
Sbjct: 304 RALHVLRHTFCSPLAMRGAPAKAIQELAGHENLSTTQRYMHL-SPAAKDAAISLLDEAAS 362

Query: 320 SIT 322
            I+
Sbjct: 363 QIS 365


>gi|150019809|ref|YP_001312063.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149906274|gb|ABR37107.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 323

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 102/227 (44%), Gaps = 25/227 (11%)

Query: 85  DRSLKRS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           DR LK       +  +K+FL Y  KRK   E  +           +P  + EK+A+   D
Sbjct: 78  DRGLKGGTYSTFVVKLKAFLTYCFKRKYLQEFEV----------KIPNVVLEKKAVYTED 127

Query: 140 --NVLLHTSHETKWI--DARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKG 194
             N+LL   +    +  D R+  ++    G G R    L++  ++I  +  S L    K 
Sbjct: 128 EINILLTKPNLNTCVIGDYRSYVMIAFFVGTGCRSETILNVRVKDINFEKDSILFSHMKT 187

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            +   VP+   +R  +LEY +    ++NL     LF  I G  ++     +  +   ++ 
Sbjct: 188 KRQATVPMSKFLRGELLEYIN----NMNLKHNDLLFPKIDGTQMSYDTMHQNFKNYFKHC 243

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            + +    +T R++FAT  + NGGD+  ++ +L H  + TT+ Y N+
Sbjct: 244 NIKMHG-VNTFRNTFATMFIKNGGDIYRLKLLLNHSTIKTTERYINL 289


>gi|332971270|gb|EGK10233.1| TnP I resolvase [Desmospora sp. 8437]
          Length = 287

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 6/164 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEY 213
           R+  + + L   GLR+SEA+ L  +++      L +Q GKG K R +PL   + + I  Y
Sbjct: 127 RDYTLAFFLAYTGLRVSEAIHLQIKDVNLPARQLVVQFGKGQKRREIPLSTRLVQVIRSY 186

Query: 214 Y-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
             D  P          LF   RG+ ++       + +  R  G+    T H+LRH F T 
Sbjct: 187 LRDTRPQYRTAERSPYLFVSSRGRQISRKTVYSLLVKYSRQAGVNPEITPHSLRHFFCTR 246

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            L  G  +  ++ I GH  ++TT IY + + K+    M+E  D+
Sbjct: 247 ALEAGYTIEEVRQIAGHANVNTTLIYAHPSRKS----MLEKIDR 286


>gi|301165214|emb|CBW24785.1| putative bacteriophage integrase [Bacteroides fragilis 638R]
          Length = 431

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 71/151 (47%), Gaps = 20/151 (13%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYY 214
            L+GC  GL   +  +LT   I  MD      I  +  K R+   VPL+   ++ I  Y 
Sbjct: 252 FLFGCFTGLSYIDIKTLTHDKIQRMDFDGEDWIITRRTKTRVSSNVPLMEIAKELIERYK 311

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL- 273
            L   D       P+       P N G   ++++Q+ +  G+      H  RH+FAT + 
Sbjct: 312 GLAGGDF----VFPM-------PSN-GTCNKHLKQIAKACGISKEIGFHLSRHTFATTVY 359

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           L NGG + ++  ILGH  +STTQIY  V +K
Sbjct: 360 LCNGGTIEALSKILGHKHISTTQIYAEVTNK 390


>gi|223369824|gb|ACM88781.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 41/64 (64%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L     Q+ ++   R   +  + + HTLRHSFATHLL +G D+R++Q +LGH  + TT I
Sbjct: 99  LAESAVQKMVKGAVRRTEIAKNASCHTLRHSFATHLLESGSDIRTVQELLGHNDVRTTMI 158

Query: 298 YTNV 301
           YT+V
Sbjct: 159 YTHV 162


>gi|188526790|gb|ACD62276.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 39/60 (65%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH   STT IYT+V
Sbjct: 99  TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDGSTTMIYTHV 158


>gi|215407984|emb|CAS02319.1| integron integrase [uncultured bacterium]
 gi|215407986|emb|CAS02320.1| integron integrase [uncultured bacterium]
 gi|215407988|emb|CAS02321.1| integron integrase [uncultured bacterium]
 gi|215407990|emb|CAS02322.1| integron integrase [uncultured bacterium]
 gi|215408004|emb|CAS02329.1| integron integrase [uncultured bacterium]
 gi|215408014|emb|CAS02334.1| integron integrase [uncultured bacterium]
 gi|215408018|emb|CAS02336.1| integron integrase [uncultured bacterium]
 gi|215408024|emb|CAS02339.1| integron integrase [uncultured bacterium]
 gi|215408028|emb|CAS02341.1| integron integrase [uncultured bacterium]
 gi|215408034|emb|CAS02344.1| integron integrase [uncultured bacterium]
          Length = 157

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 39/59 (66%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+
Sbjct: 99  TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 157


>gi|20804051|emb|CAD31628.1| PUTATIVE INTEGRASE/RECOMBINASE PROTEIN [Mesorhizobium loti R7A]
          Length = 413

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 125/302 (41%), Gaps = 61/302 (20%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR-QLSYTEIRAFISKRRTQKIGDR 86
           ERGL+  T++S++  +R+FL  +     +     T    + Y E        R    G  
Sbjct: 130 ERGLAASTVESHKLLSRRFLQEVCPAGADGFAALTPEIVIGYVE--------RHALDGSA 181

Query: 87  SLKRSLSGI-KSFLKYLKKR---KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
              +++ G+ ++FL+YL  +    +     + ++R  + +  LP  L  ++   ++D   
Sbjct: 182 DSGKAMCGVVRAFLRYLHLKGFISVALADCVPSIRRWRLAG-LPTFLPPQKVQVVLDACD 240

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
           L T+     +  R+ A+L  L   GLR  E  +L+  +I     ++ I GKG +  ++PL
Sbjct: 241 LTTA-----MGLRDYAVLMALAKLGLRAGEVAALSLDDIDWQLGSVLIHGKGRRQAMMPL 295

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTT 261
              V  AI+ Y                   IR G+P +P   + ++R L  ++G      
Sbjct: 296 RHDVGAAIVAY-------------------IRHGRPASP-CRRLFLRMLAPHVGFASGCA 335

Query: 262 ---------------------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                                AH  RHS AT LL +G     I  +L H  + +T+IY  
Sbjct: 336 ITMIAKEALERAGIHGYAHHGAHLFRHSLATDLLRSGASFAEIGQLLRHRSIDSTRIYAK 395

Query: 301 VN 302
           ++
Sbjct: 396 LD 397


>gi|253563520|ref|ZP_04840977.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251947296|gb|EES87578.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|301162178|emb|CBW21723.1| putative phage integrase protein [Bacteroides fragilis 638R]
          Length = 330

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 123/283 (43%), Gaps = 36/283 (12%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS----KRRTQKIGD 85
           G S+ TL  Y     + L+ L+           I  ++ T+IR ++S    + ++ K+  
Sbjct: 67  GCSEKTLTYYRNTIERLLVSLSL---------AICHITTTDIRTYLSNYQEEHQSSKVTI 117

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            +++R  S   SF  +L+      +S +  +  +K  + +   L+++Q   L D      
Sbjct: 118 DNMRRIFS---SFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQLRD------ 168

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           S  TK    R+ AI+  L   G+R+ E + L  ++I   +    + GKG+K R+V     
Sbjct: 169 SCTTK----RDLAIIDFLSSTGIRVGELVKLNREDIDFHERQCVVFGKGNKERVVYFNAR 224

Query: 206 VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            +  + +Y +    D   L +++  P  R      L     +  IR+L   L +P     
Sbjct: 225 TKLHLQQYLNGRTDDNPALFVSLHSPHTR------LTISGVEVRIRKLGHTLSMP-KVHP 277

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           H  R + AT  +  G  +  +Q +LGH R+ TT  Y  VN  N
Sbjct: 278 HKFRRTLATMAIDKGMPIEQVQRLLGHVRIDTTLHYAIVNQNN 320


>gi|218462165|ref|ZP_03502256.1| site-specific tyrosine recombinase XerD [Rhizobium etli Kim 5]
          Length = 191

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 87/190 (45%), Gaps = 16/190 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYE---CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +++L+ +  ERG +  TLQSYE    D R FL   +    E ++          ++ A++
Sbjct: 10  ESFLEMMSAERGAAVNTLQSYERDLDDIRSFLNGRSIRLTEAVS---------ADLSAYL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +   +Q     S  R L+ ++ F K+L    I T+     +   KK   LP+ +  ++  
Sbjct: 61  ASLASQGFKPSSQARRLAAMRQFYKFLYAEGIRTDDPTGVLDAPKKGRPLPKTMGVEEVG 120

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLL--YGCGLRISEALSLTPQNIMDDQST-LRIQG 192
            L+                R   +  L   Y  G+R+SE +SL P  ++D +   L I+G
Sbjct: 121 RLLSQAQAEADDPAPGQLQRLRMLALLELLYATGMRVSELVSL-PARVLDQEGRFLMIRG 179

Query: 193 KGDKIRIVPL 202
           KG+K R+VPL
Sbjct: 180 KGNKERLVPL 189


>gi|110597667|ref|ZP_01385952.1| Site-specific recombinase XerD-like [Chlorobium ferrooxidans DSM
           13031]
 gi|110340787|gb|EAT59264.1| Site-specific recombinase XerD-like [Chlorobium ferrooxidans DSM
           13031]
          Length = 86

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/44 (59%), Positives = 34/44 (77%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           HT RHS+ATHLL  G D+R+IQ ++GH  +STT IYT+V +K G
Sbjct: 25  HTFRHSYATHLLEAGYDIRTIQELMGHKDVSTTMIYTHVLNKGG 68


>gi|89147518|gb|ABD62619.1| integrase [uncultured bacterium]
          Length = 163

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 39/59 (66%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            QR +++     G+    + HTLRHSFAT LL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 104 LQRAMKRATEQAGIARPVSVHTLRHSFATRLLHAGYDIRTVQELLGHADVSTTMIYTHV 162


>gi|167761886|ref|ZP_02434013.1| hypothetical protein BACSTE_00229 [Bacteroides stercoris ATCC
           43183]
 gi|167700256|gb|EDS16835.1| hypothetical protein BACSTE_00229 [Bacteroides stercoris ATCC
           43183]
          Length = 330

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 123/283 (43%), Gaps = 36/283 (12%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS----KRRTQKIGD 85
           G S  TL  Y     + L+ L+           I  ++ T+IR ++S    + ++ K+  
Sbjct: 67  GCSDKTLAYYRNTIERLLVTLSL---------AICHITTTDIRTYLSDYQEEHQSSKVTI 117

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            +++R  S   SF  +L+      +S +  +  +K  + +   L+++Q   L D      
Sbjct: 118 DNMRRIFS---SFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQLRD------ 168

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           S  TK    R+ AI+  L   G+R+ E + L  ++I   +    + GKG+K RIV     
Sbjct: 169 SCTTK----RDLAIIDFLSSTGIRVGELVKLNREDIDFHERQCVVFGKGNKERIVYFNAR 224

Query: 206 VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            +  + +Y +    D   L +++  P  R      L     +  IR+L + L +P     
Sbjct: 225 TKLHLQQYLNGRTDDNPALFVSLHSPHTR------LTISGVEIRIRKLGQSLSMP-KVHP 277

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           H  R + AT  +  G  +  +Q +LGH R+ TT  Y  VN  N
Sbjct: 278 HKFRRTLATMAIDKGMPIEQVQRLLGHVRIDTTLHYAIVNQNN 320


>gi|291563477|emb|CBL42293.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4]
          Length = 350

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 104/227 (45%), Gaps = 23/227 (10%)

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL-VDNV-- 141
           +R L R +S ++SF  Y  + ++  ++    +R       +P+ L+EK+ + L +D V  
Sbjct: 109 ERGLMRKVSSLRSFYSYFFRNELIEKNPAALVR-------MPK-LHEKEIIRLEIDEVAK 160

Query: 142 LLHTSHETKWI-----------DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           LL    E   +             R+ A++ LL G G+R+SE + L   +I  D    R+
Sbjct: 161 LLDEVEEGDKLTEKQKLYHERTKVRDLAMMSLLLGTGIRVSECVGLNINDIDLDTCGARV 220

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
             KG K  ++     VR  + +Y D     D     +  LF  ++ K +N    +  +++
Sbjct: 221 YRKGGKESVIYFSDEVRDVLEDYLDEREMIDAVPGNEDALFLSMQRKRINVRSVENLVKK 280

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
             + +      T H LR ++ T L    GD+  + S+LGH  ++TT+
Sbjct: 281 YAKLVTPLKKITPHKLRSTYGTSLYRETGDIYLVASVLGHNDVNTTR 327


>gi|218902477|ref|YP_002450311.1| integrase/recombinase [Bacillus cereus AH820]
 gi|218540144|gb|ACK92542.1| integrase/recombinase [Bacillus cereus AH820]
          Length = 306

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 73/145 (50%), Gaps = 2/145 (1%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI+ LL   G+R+ E +++  ++I     ++ + GK  K + +P+   + K I E+ 
Sbjct: 140 RDHAIIVLLLSTGIRLGELVNIQWKDIDLVNRSVVLFGKARKQQSIPITDKLTKEICEWR 199

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHL 273
                +L  +I   LF    GK L+P   +   ++L + +    +  + HT RHSFA   
Sbjct: 200 IFVEKELG-SIPQYLFTSREGKQLSPNAVKLIFQRLSKVMNFKDVRLSCHTFRHSFAHRC 258

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIY 298
           +  G D+ ++Q +L H  L  T+ Y
Sbjct: 259 IMQGMDVFTLQKLLRHSNLRMTERY 283


>gi|51597440|ref|YP_071631.1| phage integrase/recombinase [Yersinia pseudotuberculosis IP 32953]
 gi|51590722|emb|CAH22367.1| Possible phage integrase/recombinase [Yersinia pseudotuberculosis
           IP 32953]
          Length = 327

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 19/149 (12%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           +D  N  +  L    G R  EA+ L  ++I+D++ T  +  K  K R VP+   V     
Sbjct: 177 LDGDNRRVAILCLSTGARWGEAIKLRTEHIIDNRITF-VATKNGKQRTVPISSDV----- 230

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
            + DL      L      +           +F++ ++ ++    LP     H LRH+FAT
Sbjct: 231 -FNDLTAMKSGLLFNDAAYL----------IFRQKLKSVK--TDLPQGQATHVLRHTFAT 277

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           H + NGG++ ++Q ILGH  +  T +Y +
Sbjct: 278 HFMINGGNIITLQRILGHSTIQQTMLYAH 306


>gi|296269753|ref|YP_003652385.1| integrase family protein [Thermobispora bispora DSM 43833]
 gi|296092540|gb|ADG88492.1| integrase family protein [Thermobispora bispora DSM 43833]
          Length = 364

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 76/154 (49%), Gaps = 12/154 (7%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAI 210
           + R++ I+ LL   G R+SE +    ++   +      RI GKG K R VPL   V +A+
Sbjct: 175 EVRDALIVLLLTTVGPRVSELVRANVEDFYTNNGIRYWRIFGKGGKTRDVPLPREVAEAL 234

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYLGLP---LSTTAHTLR 266
             Y  +         +  L    RG+ L  G  Q  I R LRR    P    S T H LR
Sbjct: 235 DAYLAVR----KGGDEKALLLSWRGRRLARGDVQAVIDRVLRRVE--PERRRSVTPHGLR 288

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           H+ ATHLL++G D+ +++ +LGH  LST   Y +
Sbjct: 289 HTTATHLLADGTDMDAVRRVLGHGDLSTLGRYRD 322


>gi|15612006|ref|NP_223658.1| integrase/recombinase (XERCD family) [Helicobacter pylori J99]
 gi|4155519|gb|AAD06517.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Helicobacter pylori J99]
          Length = 331

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 105/227 (46%), Gaps = 27/227 (11%)

Query: 95  IKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
           ++ F  YL +KR+   +  + N+   K   SLPR LN+K   + +  +L +    +   +
Sbjct: 100 LRQFFDYLDRKRRYGFDFTLKNLAFAKTKESLPRHLNDKDLKSFLKTLLDYKPATS--FE 157

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDK-----IRIVPLLPSV 206
            RN  IL ++   GLR  E L++  ++I  ++   ++ IQGKG K     I+   L PS+
Sbjct: 158 KRNKCILLIVILGGLRKCEVLNIELKHIQVEEQNYSILIQGKGRKERKAYIKKSLLEPSL 217

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN--------PGVFQRYIRQLRRYLGLPL 258
              I + Y L  F+        LF+  + K  N        P +F+  + Q++ Y     
Sbjct: 218 NAWISDDYRLKYFN-----GAYLFKKDKQKSQNSLTLYNFIPLIFK--LAQIKHYK--QY 268

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            T  H  RHSFAT +     DL      LGH  L +T+IY +   ++
Sbjct: 269 GTGLHLFRHSFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEH 315


>gi|215408012|emb|CAS02333.1| integron integrase [uncultured bacterium]
          Length = 157

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 39/59 (66%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+
Sbjct: 99  TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 157


>gi|194439346|ref|ZP_03071424.1| integrase [Escherichia coli 101-1]
 gi|194421708|gb|EDX37717.1| integrase [Escherichia coli 101-1]
 gi|323978493|gb|EGB73576.1| phage integrase [Escherichia coli TW10509]
          Length = 329

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 120/289 (41%), Gaps = 37/289 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-----IRQLSYTEIRA 73
           + WL+    +R LS L    +E   R         T  K  I+      + Q++   + A
Sbjct: 49  KEWLEKPTEQRHLSDLLPLWWELGGRNKPYANGVLTRLKKIIKEMNDPRVSQINARFMAA 108

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKSNSLPRALNEK 132
           + S R +  + + +++R  S +      L    +   E+ +  + +LK+ +     L  +
Sbjct: 109 YRSSRLSLGVKESTVRRDESDLGGMFTLLANAGEFHGENPLRALPSLKRKSPEMTYLTTE 168

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L+D V           DAR   +L L    G R  EA +L  ++I++++ T   + 
Sbjct: 169 EIAKLLDAVSG---------DARRITLLCL--STGARWGEAKNLRAEHIINNRVTFN-KT 216

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K  K+RI+P+   V   I        FD+N      + R +  KP               
Sbjct: 217 KNGKVRIIPVSDEVVSEIKTKKSGLLFDVNYEEYRKVLRSV--KP--------------- 259

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              LP     H LRH+FA H + NGG++ ++Q I+GH  +  T  Y ++
Sbjct: 260 --DLPKGQAVHVLRHTFAAHFMINGGNILTLQRIMGHATIQQTMTYAHL 306


>gi|317505696|ref|ZP_07963590.1| integrase [Prevotella salivae DSM 15606]
 gi|315663187|gb|EFV02960.1| integrase [Prevotella salivae DSM 15606]
          Length = 406

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 143/317 (45%), Gaps = 49/317 (15%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + + I+R L    L++Y+      L  L  Y ++K  +  +  LS  + +AFI       
Sbjct: 123 ERVGIDRALKTFKLRTYQ------LSLLREYVQKKHRVSDV-PLSQLD-KAFIEGFEYYL 174

Query: 83  IGDRSLKRS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             DR LKRS     +S +++ ++   K+ +      L   + ++    PR++ +++   +
Sbjct: 175 TIDRKLKRSSISSTVSTLQTIVRMAVKKGVLDFYPFLGY-SYERPKGEPRSITQEELEHI 233

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +D        E KW + R    L++ + C  GL IS+  +L  +NI+ ++  L I+G+  
Sbjct: 234 IDL-------EIKWENYRIVRDLFV-FSCFSGLAISDVRNLREENIVLEEGELCIKGRRM 285

Query: 196 KIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL----NPGVFQRYIR 248
           K +    V +LP   + +  Y                 RGIR   +       +F   + 
Sbjct: 286 KTKTPYRVQVLPPALEIMNRY-----------------RGIRAGFVFDVPTTDIFLNGMH 328

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQIY  V+S+   
Sbjct: 329 HIQRNIGMKTPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAVVSSERIH 388

Query: 308 DWMMEIYDQTHPSITQK 324
             M ++  +   + T K
Sbjct: 389 RDMQKVQQRIQDTFTLK 405


>gi|152987232|ref|YP_001350376.1| prophage CP-933T integrase [Pseudomonas aeruginosa PA7]
 gi|150962390|gb|ABR84415.1| integrase for prophage CP-933T [Pseudomonas aeruginosa PA7]
          Length = 371

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 28/224 (12%)

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            + +G ++L   L  +++    L++  K T E+ +  +R LK+  +    L+ +Q   L+
Sbjct: 134 AKPVGAKTLNHELVHLRAMFNELERLEKWTGENPLAKVRALKQDETEMGYLSREQIPLLL 193

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             +  H S  T  + AR      +    G R SEA++LTP  + D +    ++ K  + R
Sbjct: 194 AKLDQHPS--TVGMVAR------VCLATGARWSEAMNLTPLQVRDGRIHF-VRTKSARNR 244

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            VP+   ++K++       P+  + +                  F+  + +L   L LP 
Sbjct: 245 AVPISAELQKSL---EGALPWRSSYSATYK-------------AFELAVAELD--LQLPK 286

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               H LRH+FA+H + NGGD+ ++Q +LGH  L  T  Y + +
Sbjct: 287 GQLTHVLRHTFASHYMMNGGDILTLQRVLGHATLQMTMRYAHFS 330


>gi|325676755|ref|ZP_08156428.1| phage integrase family site-specific recombinase [Rhodococcus equi
           ATCC 33707]
 gi|325552303|gb|EGD21992.1| phage integrase family site-specific recombinase [Rhodococcus equi
           ATCC 33707]
          Length = 346

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 64/314 (20%), Positives = 122/314 (38%), Gaps = 35/314 (11%)

Query: 19  QNWLQNLEIERGLSKL---TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR-AF 74
           + W     + R  +K    TL++Y  D      FL+  T   ++  ++  ++   ++ AF
Sbjct: 14  EAWFAEFLLHRSTAKPSPHTLKAYRQDFAAISGFLSEQTGVPVSALSVEAITKPSMQQAF 73

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
            S   T ++   S++R  S   +   YL        + +  +   K    +P+AL     
Sbjct: 74  ASFAATHEVA--SIRRCWSTWNTLCDYLFSIDTIVANPMSAVLRPKAPKRIPKALPADAV 131

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL-------TPQNIMDDQST 187
             L+  +    +   +    R+ AI+      G+R SE +++        P         
Sbjct: 132 TRLIQTLQEDDTDGVRPWGERDFAIILTALLTGMRSSELIAVDLGDVRSAPDPSGGSARV 191

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYD-----------------LCPFDLNLNIQLPLF 230
           +R++GKG K R+    P++   +  Y +                   P+  +     PLF
Sbjct: 192 IRVRGKGSKERVATAEPALVATLTGYLESRIARFPETTKRRVPSGATPWQ-HFRSTDPLF 250

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGL----PLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
            G  G  +  G  Q  + +  R  G+          H  RH+FAT++      + ++  +
Sbjct: 251 VGADGTRITRGTLQYRVLRAYRRAGINGERAKGALTHQFRHTFATNMADENVSIFTLMRM 310

Query: 287 LGHFRLSTTQIYTN 300
           LGH  ++TTQ+YT 
Sbjct: 311 LGHESMNTTQVYTE 324


>gi|229051823|ref|ZP_04195272.1| Integrase-recombinase [Bacillus cereus AH676]
 gi|229125217|ref|ZP_04254335.1| Integrase-recombinase [Bacillus cereus 95/8201]
 gi|228658243|gb|EEL13965.1| Integrase-recombinase [Bacillus cereus 95/8201]
 gi|228721530|gb|EEL73025.1| Integrase-recombinase [Bacillus cereus AH676]
          Length = 390

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 68/153 (44%), Gaps = 10/153 (6%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           N  IL  L   G RI E  +   +++  D +  L++ GKGDK+R + +   + + I E  
Sbjct: 218 NYTILLALASTGARIQELCTARVKDLHYDGKYWLKVTGKGDKVRELFIPEHLFQCISEMR 277

Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266
               F   LN   + P+F   RG   NP      +  + +   L          TAHT R
Sbjct: 278 RRRGFQTVLNRGDESPVFINQRGNFYNPKTLSNQVTDMIKKTNLDFLKYRENPVTAHTFR 337

Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
           H+FA   +  G  DL  +   LGH  + TT+IY
Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370


>gi|89147336|gb|ABD62530.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGHDIRTVQELLGHTDVKTTQIYTHV 162


>gi|296163718|ref|ZP_06846432.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886039|gb|EFG65943.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 335

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 97/242 (40%), Gaps = 42/242 (17%)

Query: 95  IKSFLKYLKKRKITTESNILNMRNLK----KSNSLPRALNEKQALTLVDNVL-------- 142
           I +FLKYL+    TT  N +  RN +    +S +   AL E  AL  +  VL        
Sbjct: 68  ILAFLKYLE----TTRHNAIRSRNARLAAIRSFAHYAALQEPSALPGLQRVLAIPMKRFD 123

Query: 143 ---------------LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQS 186
                          L       W   R+  +L  LY  G R+SE +++  ++ ++D  +
Sbjct: 124 RPMVGFLSREEMQCILAAPAANSWCGQRDQVMLATLYNTGARVSELIAMRVRDVVLDRGA 183

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQR 245
              + GKG K R VPL     K I  +       +N +    LF    G  +   GV  R
Sbjct: 184 CANLHGKGRKERTVPLWAGTAKQIRRWLH----QINPDPDQWLFPNRAGGQMTRSGVTDR 239

Query: 246 Y-IRQLRRYLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             +      +  P     S T H +RH+ A H+L  G D+  I   LGH   +TT +Y  
Sbjct: 240 LKVAATGASIRCPQLKTRSVTPHIVRHATAMHMLQAGVDVTLIALWLGHESAATTHMYIE 299

Query: 301 VN 302
            +
Sbjct: 300 AD 301


>gi|89147328|gb|ABD62526.1| integrase [uncultured bacterium]
 gi|89147330|gb|ABD62527.1| integrase [uncultured bacterium]
 gi|89147342|gb|ABD62533.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGHDIRTVQELLGHTDVKTTQIYTHV 162


>gi|301066463|ref|YP_003788486.1| site-specific recombinase XerD [Lactobacillus casei str. Zhang]
 gi|300438870|gb|ADK18636.1| Site-specific recombinase XerD [Lactobacillus casei str. Zhang]
          Length = 370

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 63/304 (20%), Positives = 127/304 (41%), Gaps = 58/304 (19%)

Query: 56  EKITIQTIRQLSYTEIRAFIS--------KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI 107
           + + +  +  LS  + +AF++            +++  RS+   L GIK+  ++L +   
Sbjct: 64  QTVPLTVLEHLSLRDAQAFMAYLLERPSKTHHNKRMTRRSVALRLVGIKALYRFLTEESE 123

Query: 108 TTES-------NILNMRNLKKSNSLPRALNEK-QALTLVDNVLLHTSHETKWID------ 153
                      N+ N   LK         N K Q +  VD      +   +W+D      
Sbjct: 124 PHADGEPYFYRNVWNKVKLKTHTETASYRNHKLQEMLFVDG---EDAKFLQWLDQSYAQQ 180

Query: 154 -------------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG---DKI 197
                         RN A++ LL+G G+R+SE +++  +++  D+ T+++  KG   D++
Sbjct: 181 LPAKPRRYFEATKVRNLAMIALLFGSGVRVSELVNMNLEDLNMDRHTVQVVRKGNFQDRV 240

Query: 198 RIVPLL-PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-------PGVFQRYIRQ 249
                + P V+  + +   +  +    +   PLF  + G+ +N          F+RY   
Sbjct: 241 NFADWIDPYVQAYLTQRAAIIGYQKPTS---PLFVTVVGQKINRIRQNTIEAFFKRYTTD 297

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             R       +T H  RH+  T++ +   D++ +   LG    S T +Y N++ K+G + 
Sbjct: 298 YGR------RSTPHKARHTLGTNIYTVTKDVQQVADQLGQTTTSATDLYINLSDKSGKEA 351

Query: 310 MMEI 313
           + E+
Sbjct: 352 LREV 355


>gi|226312180|ref|YP_002772074.1| site-specific tyrosine recombinase XerS [Brevibacillus brevis NBRC
           100599]
 gi|226095128|dbj|BAH43570.1| putative recombinase [Brevibacillus brevis NBRC 100599]
          Length = 399

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 111/258 (43%), Gaps = 36/258 (13%)

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKK------------RKITT--ESNILNMRNLKK 121
           +K   ++  DR++ R +S +KS   YL              R +    E  I  +  L +
Sbjct: 133 TKSAKKEYSDRTISRKISSLKSLFHYLSALAEDENGESYLTRNVLAKIELEITELTPLAR 192

Query: 122 SNSL-PRALNEKQALTLVDNV----LLHTSHETK-----WIDARNSAILYLLYGCGLRIS 171
           ++++  + L + +    VD V    L H   E K         R++A++ ++   G R+S
Sbjct: 193 AHAIRAKILIDDEIYQFVDFVYNGYLAHCDTEKKKQYHMQNRDRDTALIAMILSGGFRVS 252

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLF 230
           E +SL   +I+ +++ L++  KG K    P      K  L  Y       N   Q   +F
Sbjct: 253 EIVSLDLSDIIMEKNQLKLIRKGKK-EDAPFFSDWGKEHLAKYLQLRDKYNPEPQEDAVF 311

Query: 231 RGIRGKPLNPG-------VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             +   P NP          Q+ +++  +  G+P   + H LRHSFAT  L    D   +
Sbjct: 312 LAV--SPANPNGHRIEVRSVQKLVKKYAKAFGIP-DLSVHKLRHSFATQFLRLNPDPHQL 368

Query: 284 QSILGHFRLSTTQIYTNV 301
           Q+ LGH ++ TT  Y +V
Sbjct: 369 QAQLGHSKIETTMQYAHV 386


>gi|217963765|ref|YP_002349443.1| integrase/recombinase [Listeria monocytogenes HCC23]
 gi|217333035|gb|ACK38829.1| integrase/recombinase, putative [Listeria monocytogenes HCC23]
 gi|307571661|emb|CAR84840.1| integrase/recombinase, putative [Listeria monocytogenes L99]
          Length = 314

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 5/162 (3%)

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
           H   +  +   R+  I  LL   G+RISEA+ +  Q+I  D   + ++ K  K RIV + 
Sbjct: 143 HFKKKETFSSYRDLVIFQLLLDTGIRISEAVGINIQDIHSD-YIIVVESKNLKQRIVYIS 201

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
             +R+ +  Y  +     NL+    +F      P N   FQ+ +R+ R   G+    + H
Sbjct: 202 KRMREKLTSYLKIRG---NLS-HTKVFINRDQLPYNKNTFQQNLREARVLCGIQKQVSPH 257

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             R ++A + + +G D  S+ ++LGH  L  T+ Y  +  K+
Sbjct: 258 VCRRTYAKNAILSGMDAFSLATLLGHSSLEVTKRYVQIWGKD 299


>gi|23011550|ref|ZP_00051877.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1]
          Length = 131

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 51/85 (60%), Gaps = 1/85 (1%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            W + L  ER ++  T+++YE D RQFL  L   +    TI  +  L   ++R F++ RR
Sbjct: 27  GWREALARERRMAANTVEAYERDLRQFLTHLDARSGTP-TIPGLIALKPRDLRGFMAARR 85

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKK 104
            + +G R+L R L+G++SF ++L++
Sbjct: 86  AEGVGGRTLMRMLAGLRSFARFLER 110


>gi|304439581|ref|ZP_07399486.1| phage integrase family site-specific recombinase [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304371960|gb|EFM25561.1| phage integrase family site-specific recombinase [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 309

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 111/234 (47%), Gaps = 31/234 (13%)

Query: 86  RSLKRSLSG----IKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLVDN 140
           R LK   +G    + ++  +L +R+I  E+ I+ +    KK ++ PR   EK++L  + +
Sbjct: 61  RDLKGGYNGYRKRLNTYFNFLIEREIIEENPIVKLGIKRKKEDAEPRPA-EKESLKKILS 119

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTLRIQ---GKGDK 196
           +L   S    + + R+   + L    G+R +EA+ +  +N+ D     LRI    GK +K
Sbjct: 120 LLDLNS----YTEFRDYVFILLTLDTGIRPAEAVQVY-ENLFDYYNKDLRITPSIGKCNK 174

Query: 197 IRIVPLLPSVRKAILEYYDLCP---FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            RI+PL   V K +   +++     F  N      LF    GK L+    QR   +  RY
Sbjct: 175 SRILPLSDGVIKYVKRLFEINKRNNFKSN-----NLFLSDSGKELSTTAIQR---KFARY 226

Query: 254 LGL-----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             +         T + LRH FAT  L NGG++  +Q ++GH  +  T+ Y  +N
Sbjct: 227 CDILELCGEDRITPYQLRHYFATTYLENGGNIVYLQYLMGHSDIKMTKKYLKIN 280


>gi|322420382|ref|YP_004199605.1| integrase family protein [Geobacter sp. M18]
 gi|320126769|gb|ADW14329.1| integrase family protein [Geobacter sp. M18]
          Length = 334

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 94/188 (50%), Gaps = 21/188 (11%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA-ILYLLYGCGLRISEALSLTP 178
           K+S    R L++++ L +V ++L  T H++K      +A ++ +L   G R+SE L+L  
Sbjct: 150 KESKGRIRVLSKEEELAVV-SLLRDTDHKSKRSYYPEAADLVEVLVDTGCRLSEILNLKY 208

Query: 179 QNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIR 234
           ++I  D + + I   KGDK R +P+   V   +L   +   L PF ++++     +  +R
Sbjct: 209 EDINWDTNLITIWVNKGDKPRSIPMTKRVGGILLARQEGNWLKPFSIDIDQAQKAWSWVR 268

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            +     +   Y R+             H+LRH+ AT LL  G DL +++  LGH  +  
Sbjct: 269 KR-----MMLEYDREF----------VMHSLRHTCATRLLDRGIDLYTVKEWLGHSTIQV 313

Query: 295 TQIYTNVN 302
           T+ Y ++N
Sbjct: 314 TERYAHLN 321


>gi|228931327|ref|ZP_04094256.1| Integrase-recombinase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228828330|gb|EEM74036.1| Integrase-recombinase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 390

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 68/153 (44%), Gaps = 10/153 (6%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           N  IL  L   G RI E  +   +++  D +  L++ GKGDK+R + +   + + I E  
Sbjct: 218 NYTILLALASTGARIQELCTARVKDLHYDGKYWLKVTGKGDKVRELFIPEHLFQCISEMR 277

Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266
               F   LN   + P+F   RG   NP      +  + +   L          TAHT R
Sbjct: 278 RRRGFQTVLNRGDESPVFINQRGNFYNPKTLSNQVTDMIKKTNLEFLQYRENPVTAHTFR 337

Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
           H+FA   +  G  DL  +   LGH  + TT+IY
Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370


>gi|118591862|ref|ZP_01549257.1| integrase/recombinase [Stappia aggregata IAM 12614]
 gi|118435505|gb|EAV42151.1| integrase/recombinase [Stappia aggregata IAM 12614]
          Length = 85

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 35/50 (70%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           GL    + HTLRHSFATHLL +G D+R IQ +LGH +L TT +Y  V+ +
Sbjct: 13  GLRKRVSPHTLRHSFATHLLEDGTDIRVIQVLLGHSKLETTALYAKVSPR 62


>gi|91790655|ref|YP_551607.1| phage integrase [Polaromonas sp. JS666]
 gi|91699880|gb|ABE46709.1| phage integrase [Polaromonas sp. JS666]
          Length = 291

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 74/151 (49%), Gaps = 12/151 (7%)

Query: 160 LYLLYGCGLRISEALSLTPQNI--MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL 216
           L  LY  GLR+SE   L   +I    D+  +R+  GKG   R   L PS+  A+L  Y  
Sbjct: 125 LQTLYATGLRVSEVGRLRVSDIDSAADRMCVRVNAGKGGADRYSILSPSL-LALLRLY-- 181

Query: 217 C-PFDLNLNIQLPLFR---GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           C  +    N    LF    G RG  +     QR  +  R   G+  S   HTLRH FATH
Sbjct: 182 CQTYAPQRNPGKWLFANGTGERGVGIE--SLQRAYQAARHCAGITKSGGTHTLRHCFATH 239

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           LL +G DL +I  +LGH  +STT  Y ++ S
Sbjct: 240 LLESGVDLYTISRLLGHRHISTTSRYLHLIS 270


>gi|89147524|gb|ABD62622.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 35/47 (74%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           G+    + HTLRHSFATHLL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 116 GIIKPVSCHTLRHSFATHLLQTGQDIRTVQELLGHADVSTTMIYTHV 162


>gi|332799019|ref|YP_004460518.1| integrase family protein [Tepidanaerobacter sp. Re1]
 gi|332696754|gb|AEE91211.1| integrase family protein [Tepidanaerobacter sp. Re1]
          Length = 297

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 118/289 (40%), Gaps = 39/289 (13%)

Query: 29  RGLSKLTLQSYECDTRQFLIFL--AFYTEEKITIQTIRQLS---YTEIRAFISKRRTQKI 83
           +GL++ TLQ YE +   F      A   +E++ +  +   S   +     F S+R+    
Sbjct: 16  QGLAERTLQDYEYNIGLFFKAYPNALKDDERLEMAVLEYFSSIGHLAPATFNSRRKN--- 72

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
                      + +F  +LK  K   E N +     +K   LPRA +E+   TL    LL
Sbjct: 73  -----------LNTFFLWLKDEKGIIEQNPICHIKRRKEEKLPRASDEE---TLAK--LL 116

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IV 200
                T +   R+ A++ L    G+R  EA  L  ++   +   + I  +  K R   I+
Sbjct: 117 KAPDITTFAGLRDYALIVLTLDTGIRPGEAFGLLKKDFDLETGQIEIPAEVAKTRTRRIL 176

Query: 201 PLLPSVRKAILEY----YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           P+LP    AI E     +   P        +P+F    G  L    + R + +    +G 
Sbjct: 177 PILPQTVLAIAELIQSRHKYWP------DTVPVFCTENGGKLGKNQWGRRMIEYGEKIGK 230

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
               T + LRHSFA   L N G    +Q +LGH  +  T+ Y  ++  +
Sbjct: 231 --KVTPYQLRHSFALLFLRNKGSAFHLQQMLGHTTMEMTEKYVYLSKSD 277


>gi|318604128|emb|CBY25626.1| putative bacteriophage integrase [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 351

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 21/145 (14%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           ++ +    G R SEA SL+   I  D+ T  I+ KG K R +P+   + K+I +      
Sbjct: 197 VVKICLATGARWSEAESLSLSQITKDRITF-IKTKGKKNRTIPVSEELIKSIPKKES--- 252

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNG 277
                           G+PL    +  +   L+R  + LP    +H LRH+FA+H +  G
Sbjct: 253 ----------------GEPLFVSCYSAFRTALKRAKINLPAGQLSHVLRHTFASHFMMAG 296

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVN 302
           G++  +Q ILGH  +  T  Y++ +
Sbjct: 297 GNILVLQRILGHTDIKMTMRYSHFS 321


>gi|160874839|ref|YP_001554155.1| integrase family protein [Shewanella baltica OS195]
 gi|160860361|gb|ABX48895.1| integrase family protein [Shewanella baltica OS195]
          Length = 210

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 96/198 (48%), Gaps = 22/198 (11%)

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
           L+ +  K+ + LP+ L+ +     +  +L H        + +  A+L L YGCGLR+SE 
Sbjct: 10  LSNKAPKRPHKLPQLLSCQD----IAALLCHCQ------NLKQRAMLALCYGCGLRVSEL 59

Query: 174 LSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFR 231
             +   +I   +  L++ QGKG   R+V + P++   + +Y+    P +        LF 
Sbjct: 60  THIKVADIDGQRQLLKVCQGKGAYDRLVIISPTLLTLLRQYWRAYHPVEW-------LFA 112

Query: 232 GIRGK---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
                   PL+   F++ + +  R   +    + H+LRH++ATH L  G  L  +Q+ LG
Sbjct: 113 STYHDVVYPLHESTFRKALAKAARLASITKPCSPHSLRHAYATHQLQAGMPLHQLQAQLG 172

Query: 289 HFRLSTTQIYTNVNSKNG 306
           H  + +T+ Y + + + G
Sbjct: 173 HHSIKSTERYLHWSPELG 190


>gi|89147464|gb|ABD62592.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 33/41 (80%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T H LRHSFATHLL +G D+R++Q +LGH  + TT+IYT+V
Sbjct: 122 TCHVLRHSFATHLLEDGRDIRTVQELLGHGDVKTTEIYTHV 162


>gi|303242645|ref|ZP_07329119.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302589784|gb|EFL59558.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 418

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 123/296 (41%), Gaps = 24/296 (8%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLI-FLAFYTEEKITIQTIRQLSYTEIRAF 74
           K  Q +L+    E  L++ TL+    + R +L  F  F   + IT+     L   E  AF
Sbjct: 110 KVSQEYLEFCRNELLLAEKTLE----NKRLYLYDFCKFLNSKNITLN---DLCIEETEAF 162

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM--RNLKKSNSLPRALNEK 132
                       +  R+LS    FL+Y    K + +   + +   N +K   LP    E 
Sbjct: 163 FISMNYTLASRHNAARNLS---LFLRYAYDNKYSQKDTSIYILPDNYRKDCKLPTTYEED 219

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-Q 191
           +    +  VL+     +  I  R+  IL L    GLR  +  +L   +I  D++ +RI Q
Sbjct: 220 E----IKEVLISVERASS-IGKRDYLILLLATEYGLRAKDITNLCFDDIDWDRNVIRINQ 274

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            K D     PLL S+  AI++Y     P      I +      +GKPL+       + + 
Sbjct: 275 HKTDFPVEFPLLASIGNAIIDYLKYGRPLSDAPQIIVSAENANKGKPLSSPTIHSVVTKY 334

Query: 251 RRYLGLP----LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +  G+          H +RHS AT+LL     +  I +++GH R  TT  Y +V+
Sbjct: 335 MKRAGIKNWQNKKHGPHAMRHSLATNLLKKNISMPIISTVMGHQRTETTSTYISVD 390


>gi|150400384|ref|YP_001324151.1| phage integrase family protein [Methanococcus vannielii SB]
 gi|150013087|gb|ABR55539.1| phage integrase family protein [Methanococcus vannielii SB]
          Length = 322

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 126/290 (43%), Gaps = 15/290 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + W+     ER    +   + E D  +  +FL F   E++  +     +   +R F    
Sbjct: 24  KKWIDKYVSEREFDGIKESTIEGDLNRLKVFLNF-GYERLEKEPNDMENSDFVRFFNYLE 82

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +K+   + KR    +K F K ++   +    N    R  K+ +S      +     ++
Sbjct: 83  NERKLSRNTQKRYYDVLKVFYKLMRLENLNDFKNESEDR--KRFSSFEIKHYDSLGADIL 140

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKI 197
           + +L+           R++ I+  L+  G R+SEAL+L   +   ++   R++  KG + 
Sbjct: 141 NLILMEVLESRSTTKVRDAMIIRFLWDTGARVSEALNLKYGDSDLEKGEFRLRDTKGKEE 200

Query: 198 RIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLN----PGVFQRYIRQLRR 252
           RIV    +  K  L++ + C   ++  N    LF+  RG+PL       VF+  +++L++
Sbjct: 201 RIV----TCSKDTLDFVNYCLKANIKKNPGDNLFQTYRGEPLKRNRPSDVFRNAVKELKK 256

Query: 253 YLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              L  +     H+LRH  A  LL  G  +  ++  LGH  + TT  Y++
Sbjct: 257 KGKLQDNKRVVIHSLRHGRAVDLLDKGMPIDIVKEYLGHKSIETTLYYSH 306


>gi|67077939|ref|YP_245559.1| integrase-recombinase [Bacillus cereus E33L]
 gi|66970245|gb|AAY60221.1| integrase-recombinase [Bacillus cereus E33L]
          Length = 390

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 67/153 (43%), Gaps = 10/153 (6%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           N  IL  L   G RI E  +   +N+  D +  L++ GKGDK+R + +   + + I E  
Sbjct: 218 NYTILLALASTGARIQELCTARVKNLHYDGKYWLKVTGKGDKVRQLFISEHLFQCICEMR 277

Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266
               F   L+   + PLF   RG   N       +  + +   L          TAHT R
Sbjct: 278 RRRGFQTVLDRGDESPLFVNQRGNSYNSKTLSNQVTDMIKKTNLEFLLYRENPVTAHTFR 337

Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
           H+FA   +  G  DL  +   LGH  + TT+IY
Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHEDIQTTKIY 370


>gi|237737268|ref|ZP_04567749.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817]
 gi|229421130|gb|EEO36177.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817]
          Length = 325

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 86/185 (46%), Gaps = 21/185 (11%)

Query: 138 VDNVLLHTSHETKWI----------DARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           +DNVL  ++ + K I          + RN  ILY L+  G+R SE ++L  +++++ +  
Sbjct: 127 IDNVLKLSAEDIKKIIGQYTIKGEKEYRNITILYTLFYTGMRSSELINLKFKHLLNREGN 186

Query: 188 LRI---QGKGDKIRIVPLLPSVRKAILEY--YDLCPF---DLNLNIQLPLFRGI-RGKPL 238
             I   + K  K +   + P++ + +LEY  Y    F   D N+  Q      I +   L
Sbjct: 187 YFIKLEETKSGKEQYKSIYPTLVEKLLEYKKYKQMFFSISDENIEEQYIFNSSIEKNTKL 246

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +       I+   + +G  +S   H +RH+ AT L  NG D+  I+  LGH     T+IY
Sbjct: 247 SYRTLYDIIQNFGKIIGKDIS--PHNIRHAVATELSLNGADILEIRDFLGHSDTRVTEIY 304

Query: 299 TNVNS 303
            N  S
Sbjct: 305 INAKS 309


>gi|153939017|ref|YP_001391193.1| phage integrase family site specific recombinase [Clostridium
           botulinum F str. Langeland]
 gi|152934913|gb|ABS40411.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum F str. Langeland]
 gi|295319232|gb|ADF99609.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum F str. 230613]
          Length = 330

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 128/300 (42%), Gaps = 49/300 (16%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK----IG 84
           + LSK T+ SYE   R F  +L    EE+  I  +++++   IR +I+  + +     +G
Sbjct: 18  KNLSKKTMMSYEQTLRLFTKYL----EEEKGIGDVKKVTEKMIREYINYTKNRGKYTIVG 73

Query: 85  DR---------------------SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           D+                     ++   +  IK F  +L ++    +  + N++  K   
Sbjct: 74  DKETLKTNTPEMRKDYGKKVSITTINNYIRNIKVFFNFLLEQSYIKKDVVKNIKQFKNQR 133

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-M 182
                + + Q   L+ ++       TK+ + R+   + +L   G+RI E L +  +NI M
Sbjct: 134 KAKEFITDSQFAELLRHI-----DTTKFHERRDHLCIMMLLDTGMRIGECLEIKVENIDM 188

Query: 183 DDQSTL--RIQGKGDKIRIVPLLPSVRKAI---LEYYD-LCPFDLNLNIQLPLFRGIRGK 236
           + +S L   +  KG + R V     ++K +   L+Y D     D        LF   +G 
Sbjct: 189 NYRSILLPAVDTKGKRDRYVYFSQVMQKELRRWLQYKDRYVESDY-------LFCTTKGT 241

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           P+    F+R ++      GL      H LR++FA   L +GG +  +  +LGH  +  T+
Sbjct: 242 PVLIRTFERKLKDYANRAGLK-DIHPHQLRNNFAKRFLMSGGSIYILSQVLGHSSVKVTE 300


>gi|116629555|ref|YP_814727.1| integrase [Lactobacillus gasseri ATCC 33323]
 gi|238854086|ref|ZP_04644435.1| integrase [Lactobacillus gasseri 202-4]
 gi|116095137|gb|ABJ60289.1| Integrase [Lactobacillus gasseri ATCC 33323]
 gi|238833293|gb|EEQ25581.1| integrase [Lactobacillus gasseri 202-4]
          Length = 322

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 121/285 (42%), Gaps = 40/285 (14%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF-ISKRRTQKIGDRSL 88
           G S  T++ Y+    Q L  +         I+ IR+++  E+R + +  ++    G  ++
Sbjct: 59  GCSDRTIKYYKVTVEQLLAKV---------IRPIRRITTEEMREYLVEYQKINNCGKTTI 109

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
                 I SF  +L++     E  IL         S  R +++ +A  LV NV+     E
Sbjct: 110 DNIRRNISSFFSWLEE-----EDYILK--------SPMRRIHKIRAEKLVKNVITDEDIE 156

Query: 149 TKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            K  D     R+ A++ LLY  G+R+ E + L   +I   +    + GKGDK R V    
Sbjct: 157 -KLRDGCSCLRDVAMIDLLYSTGIRVGELVRLNRNDINFSERECVVFGKGDKERRVYFDA 215

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN----PGVFQRYIRQLRRYLGLPLST 260
             +  ++ Y      D        LF  +  KP +     GV  R +RQL R L L    
Sbjct: 216 KSKVHLINYLRSREDD-----NPALFVSL-DKPNDRLKISGVEIR-LRQLGRKLHLD-RI 267

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             H  R S AT  +  G  +  +Q ILGH ++ TT  Y  VN  N
Sbjct: 268 HPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVNQNN 312


>gi|149916579|ref|ZP_01905094.1| Integrase [Roseobacter sp. AzwK-3b]
 gi|149809553|gb|EDM69412.1| Integrase [Roseobacter sp. AzwK-3b]
          Length = 188

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 13/162 (8%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-------IQGKGDKIRIVPLLPSVR 207
           R+  I+   +  GLR  E  +L+  ++ D++  +R        Q KG + R V +   +R
Sbjct: 27  RDRTIIQFSFYAGLRAKELAALSRGDVYDEEGRVREQFTLSAAQAKGGRSRTVWINRRLR 86

Query: 208 KAILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           + + EY       LN+ N Q PLF   +G   +     +    + +  G   +++ H+ R
Sbjct: 87  RVLEEY----AAQLNITNPQQPLFESQKGGAFSANTMTQLFLDIYKAAGFAHASS-HSGR 141

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            SF T+L +    +R +  + GH  + TTQ Y +VN K   D
Sbjct: 142 RSFITNLAAKSVSVRVLAELAGHSSIQTTQRYIDVNPKQMSD 183


>gi|255013631|ref|ZP_05285757.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 367

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 18/155 (11%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSVRKAILEY 213
           SA L+  + CGLRIS+ + L  +N+  D    R+     K +    +PL     K + E 
Sbjct: 218 SAYLFSCF-CGLRISDIIGLQWKNVFIDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPER 276

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            D    D   ++              P    + I+   +  G+    T HT RH+FAT +
Sbjct: 277 GDKTADDHVFDL--------------PSGINQLIKPWAKAAGISKRFTFHTARHTFATMM 322

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           L+ G DL ++  +LGH  +  TQ+Y  + +K   D
Sbjct: 323 LTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKKDD 357


>gi|310765510|gb|ADP10460.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 208

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 12/143 (8%)

Query: 190 IQGKGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLF---RGIRGKPLNPGVFQR 245
           +QGKG + R +P+       +  Y +++ P  L +     LF    G+ G   N G+   
Sbjct: 69  VQGKGKQDRDIPVGERALCWLRHYLHEVRPEILAVAGCKALFVAMDGVAGLTAN-GITHA 127

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +  LR  +      + H  RH+ AT +L NG DLR IQ++L H  + +TQIYT V+ + 
Sbjct: 128 VVPYLRAGID---KGSCHLFRHAMATQMLENGADLRWIQAMLSHRSVESTQIYTQVSIRA 184

Query: 306 GGDWMMEIYDQTHPSITQKDKKN 328
               +  ++  THP+  + D ++
Sbjct: 185 ----LQAVHASTHPAEREADSEH 203


>gi|83722825|gb|ABC41684.1| integrase [uncultured bacterium]
          Length = 164

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 122 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 163


>gi|215407982|emb|CAS02318.1| integron integrase [uncultured bacterium]
          Length = 149

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 38/58 (65%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT
Sbjct: 92  TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 149


>gi|291526089|emb|CBK91676.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
 gi|291527174|emb|CBK92760.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 336

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 105/245 (42%), Gaps = 15/245 (6%)

Query: 62  TIRQLSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           ++R+++  EIR ++S  ++     + ++      I SF  +L++     +S +  +  +K
Sbjct: 96  SVRKITTEEIREYLSDYQKLNNCSNVTIDNVRRNISSFFSWLEEEDYILKSPMRRIHKIK 155

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               +   ++++    L DN            + R+ AI+ LLY  G+R+ E ++L   +
Sbjct: 156 TKTVVKSVISDEGIEKLRDNCN----------EKRDLAIIDLLYSTGIRVGELVNLNIDD 205

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I  +     + GKGDK R V       KA +   D      + N  L +        L  
Sbjct: 206 IDLEGRECIVYGKGDKERRVYFDA---KAKVHLKDYINTRTDKNKALFVTLDAPHDRLKI 262

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              +  +R+L R L L      H  R S AT  +  G  +  +Q ILGH ++ TT  Y  
Sbjct: 263 SGVEIRLRKLGRKLSLE-RIHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAM 321

Query: 301 VNSKN 305
           VN  N
Sbjct: 322 VNQNN 326


>gi|223369780|gb|ACM88760.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|158339199|ref|YP_001520376.1| tyrosine recombinase XerC [Acaryochloris marina MBIC11017]
 gi|158309440|gb|ABW31057.1| tyrosine recombinase XerC, putative [Acaryochloris marina
           MBIC11017]
          Length = 214

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 3/150 (2%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR-IVPLLPSVRKAILE 212
           AR+ A++ LL+  GLR SE +    ++   +Q  L I GKG   R  + L  S  +AI E
Sbjct: 37  ARDFAMMTLLWEAGLRRSELVGCDVRHFDSEQKRLSILGKGRNEREWIDLTESGVRAISE 96

Query: 213 YYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS-FA 270
           + +L   + L   + + L R   G  L+     R +R L +  G+  +   H +RHS   
Sbjct: 97  WLELREVYGLTEPLFISLDRANWGSRLSGTSVYRIVRALAKKAGVSENFGPHKVRHSGTT 156

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           T+L   GGDLR  Q+   H  L+T + Y +
Sbjct: 157 TYLEMTGGDLRGAQAYSRHANLNTLKFYDD 186


>gi|50955878|ref|YP_063166.1| phage-related integrase/recombinase [Leifsonia xyli subsp. xyli
           str. CTCB07]
 gi|50952360|gb|AAT90061.1| phage-related integrase/recombinase [Leifsonia xyli subsp. xyli
           str. CTCB07]
          Length = 256

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 17/164 (10%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQST--------LRIQ------GKGDKIRIV 200
           R++ +L ++YG GLR  EA+ L   ++  +           LR++      G   K+R V
Sbjct: 69  RDATLLKVVYGWGLRSHEAIMLDTVDLFRNPKVSAFGELGMLRVRFGKSSRGGPPKLRTV 128

Query: 201 P-LLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
             ++P    A+ +Y + + P  +       ++   R + L          + R  LGL  
Sbjct: 129 ASVVPWAVTALQDYLENMLPL-MRTGTSSAMWFSERSRRLGVRAIGDRFARYRDELGLDS 187

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             T H LRHS+ATHL+ +G D   +Q  LGH   STT IYT+V+
Sbjct: 188 RLTPHCLRHSYATHLIEDGHDPVFVQRQLGHVYQSTTSIYTHVS 231


>gi|160938560|ref|ZP_02085913.1| hypothetical protein CLOBOL_03456 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438489|gb|EDP16247.1| hypothetical protein CLOBOL_03456 [Clostridium bolteae ATCC
           BAA-613]
          Length = 331

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 128/301 (42%), Gaps = 28/301 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDT----RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           N +   E++  + K+  ++Y   T    ++FL  L  Y  +   +Q I      E   + 
Sbjct: 49  NVVSFPELDIFIGKMRFENYSASTVNQYQRFLTDLLVYVGK--PVQEITGEDVVECLNYY 106

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            + R      +  KR ++   SF  +L  R    ++ +  +  +K    +  AL  ++  
Sbjct: 107 EQVRQISTSTKDHKRRIA--SSFFAFLHDRGYIRKNPMATVDPIKYVAEIREALTSRE-- 162

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
             V+ + +         + R++A+L L    G R+SE + +  ++I      +++ GKG 
Sbjct: 163 --VEKLRIACGG-----NVRDNAVLELFLATGCRVSEVVGMHVEDIDMQVGCVKVLGKGQ 215

Query: 196 KIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K RIV       + +  Y D      + L+ + P       + L     +  IR++    
Sbjct: 216 KERIVFFGDRAMEYLERYLDGRRAGAVILSSRAP------HQGLKKNALENIIRRIANQA 269

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           GL      H LRH+FAT  L+ G  L ++  ++GH  + TT+IY    +KNG   +   Y
Sbjct: 270 GLGKRVFPHLLRHTFATRALNKGMPLPTLCDLMGHASVETTRIY----AKNGVGKIKYEY 325

Query: 315 D 315
           D
Sbjct: 326 D 326


>gi|94442274|dbj|BAE93636.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 41/69 (59%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           IR   L+    Q+ +++  R   +      HTLRH FATHLL    D+R++Q +LGH  +
Sbjct: 93  IRRHHLHESTLQKSVKKAARGCAINKRMRCHTLRHCFATHLLEANHDIRTVQELLGHAHV 152

Query: 293 STTQIYTNV 301
           STT IYT+V
Sbjct: 153 STTMIYTHV 161


>gi|55981508|ref|YP_144805.1| putative phage integrase/recombinase [Thermus thermophilus HB8]
 gi|55772921|dbj|BAD71362.1| putative phage integrase/recombinase [Thermus thermophilus HB8]
          Length = 293

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 16/170 (9%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL-LPSVRKAILEY 213
           R+ A++ +L+  GLR SE L L   ++      +R++ KG  ++ VP+ LP+ R AIL Y
Sbjct: 131 RDKALVMVLWDTGLRASEVLGLRVSDV--KAEAVRVRRKGGAVQWVPVSLPTYR-AILAY 187

Query: 214 Y--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
              +  P D +      LF    G PL     +  +R+L  Y GLP     H  R   A 
Sbjct: 188 ARAERPPSDHDA-----LFLTRSGLPLAYDGLKMVLRRLAEYAGLP-PKPPHAFRRGAAV 241

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            ++ NG    ++Q++LGH     T  Y  +  K+    + EI+    P I
Sbjct: 242 AMVKNGMPSYALQAMLGHKSPVMTAHYVRLAEKD----LREIHRTASPVI 287


>gi|146292724|ref|YP_001183148.1| phage integrase family protein [Shewanella putrefaciens CN-32]
 gi|145564414|gb|ABP75349.1| phage integrase family protein [Shewanella putrefaciens CN-32]
          Length = 235

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 116/248 (46%), Gaps = 29/248 (11%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS-LKRS 91
           +++L+ Y   TR   ++ A    ++   Q +  ++  ++ A+      ++   R+ LK  
Sbjct: 11  EISLRGYSARTRNAYLY-AITQLQQYANQPLDNITDEQLTAYFRYLNLERHHSRATLKLQ 69

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L+GI  F +++ KR  T + ++      K+ + LP+ L+ +     +  +L H       
Sbjct: 70  LNGIHFFYEHVLKRDFTIQLSLP-----KRPHKLPQLLSCQD----IAALLYHCQ----- 115

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210
              +  A+L L YGCGLR+SE   +   +I   +  L++ QGKG   R V L P++   +
Sbjct: 116 -SLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGACDRWVILSPTLLTLL 174

Query: 211 LEYY-DLCPFDLNLNIQLPLFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            +Y+    P +        LF         PL+   F++ + +  R  G+    + H+LR
Sbjct: 175 RQYWRAYHPVEW-------LFASTYHDVVYPLHESTFRKALAKSARLAGITKPCSPHSLR 227

Query: 267 HSFATHLL 274
           H++ATH L
Sbjct: 228 HAYATHQL 235


>gi|254931488|ref|ZP_05264847.1| transposase A [Listeria monocytogenes HPB2262]
 gi|293583040|gb|EFF95072.1| transposase A [Listeria monocytogenes HPB2262]
          Length = 361

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 96/213 (45%), Gaps = 28/213 (13%)

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
            K FL ++ K K + + NIL +R  KK   L + L  +Q   ++D    HT         
Sbjct: 140 FKGFLHHISKGK-SYKKNILKLRVKKK---LVQVLEHEQVKAIIDAC--HTK-------- 185

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-------QGKGDKIRIVPLLPSVR 207
           R+  ++ L+Y  GLRI E LSL  ++I    + + I        G   K+R    +   +
Sbjct: 186 RDKLLIMLMYEGGLRIGEVLSLRIEDISTWDNLINITPRDHNENGAYIKLRKERTIDVSK 245

Query: 208 KAILEYYDLCPFDLNLNIQ-----LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           + +  Y D    +   +++     + L     GKPL        IR+L +  G+    TA
Sbjct: 246 ELMALYTDYLVHEYGEDLEHDYIFINLKESYFGKPLKYQSVLDLIRRLGKRTGITF--TA 303

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           H LRH+ AT L+ +G D   +Q  LGH  + TT
Sbjct: 304 HMLRHTHATELIRSGWDAAYVQKRLGHAHVQTT 336


>gi|159905040|ref|YP_001548702.1| integrase family protein [Methanococcus maripaludis C6]
 gi|159886533|gb|ABX01470.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 282

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 72/141 (51%), Gaps = 6/141 (4%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLN 224
           G+RISE  ++  Q+I  +   + I+ GKG K R V    ++   I EY  + C  D + +
Sbjct: 131 GVRISEIRNIKLQDIDFESKCIFIRAGKGKKDRYVFFDNNLEFHIKEYIKERCYRDPDCD 190

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-GLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
               LF    G+P++      Y   L      + +  T H LRH+FAT +L  G DL+S+
Sbjct: 191 ---NLFINRFGRPVSRRSIIYYTEYLNEVAPNIHIRITPHILRHTFATSMLERGIDLKSL 247

Query: 284 QSILGHFRLSTTQIYTNVNSK 304
             ILGH  +STT IY + N +
Sbjct: 248 SLILGHENISTTSIYLHKNKE 268


>gi|254884116|ref|ZP_05256826.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|254836909|gb|EET17218.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
          Length = 376

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 18/155 (11%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSVRKAILEY 213
           SA L+  + CGLRIS+ + L  +N+  D    R+     K +    +PL     K + E 
Sbjct: 227 SAYLFSCF-CGLRISDIIGLQWKNVFIDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPER 285

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            D    D   ++              P    + I+   +  G+    T HT RH+FAT +
Sbjct: 286 GDKTADDHVFDL--------------PSGINQLIKPWAKAAGISKRFTFHTARHTFATMM 331

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           L+ G DL ++  +LGH  +  TQ+Y  + +K   D
Sbjct: 332 LTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKKDD 366


>gi|83722823|gb|ABC41683.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|326802762|ref|YP_004320580.1| site-specific recombinase, phage integrase family [Aerococcus
           urinae ACS-120-V-Col10a]
 gi|326651079|gb|AEA01262.1| site-specific recombinase, phage integrase family [Aerococcus
           urinae ACS-120-V-Col10a]
          Length = 306

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 94/205 (45%), Gaps = 26/205 (12%)

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
            + LN++    L++ + L T     W+       + L+   GLR SEAL +TP +    Q
Sbjct: 113 AKYLNQEDLHKLLNQLHLQTEISYDWL-------ILLVAKTGLRFSEALGVTPSDFNFSQ 165

Query: 186 STLRIQG----KGDKIRIVPL--LPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGK 236
             L I      K D+   VP     SVRK  L++     F     N   Q P+F  ++G+
Sbjct: 166 HMLSINKTWDYKKDEGGFVPTKNASSVRKLRLDWQLTLQFQQLIQNYPQQKPIF--VQGR 223

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
             N  V QR + +L +  G+P   T H LRH+ A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 224 IHNSTVNQR-LAKLCQQTGIP-EITIHALRHTHASMLLYGGVSIASVAKRLGHANMATTQ 281

Query: 297 -----IYTNVNSKNGGDWMMEIYDQ 316
                I   +  K+    MMEI  Q
Sbjct: 282 KTYLHIIQELEDKDNNK-MMEILCQ 305


>gi|223369782|gb|ACM88761.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|223369772|gb|ACM88756.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|223369766|gb|ACM88753.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|89147386|gb|ABD62553.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|239937597|gb|ACS35604.1| putative IntI2-like integrase [uncultured bacterium]
          Length = 163

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|237719978|ref|ZP_04550459.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229450530|gb|EEO56321.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 376

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 18/155 (11%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSVRKAILEY 213
           SA L+  + CGLRIS+ + L  +N+  D    R+     K +    +PL     K + E 
Sbjct: 227 SAYLFSCF-CGLRISDIIGLQWKNVFIDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPER 285

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            D    D   ++              P    + I+   +  G+    T HT RH+FAT +
Sbjct: 286 GDKTADDHVFDL--------------PSGINQLIKPWAKAAGISKRFTFHTARHTFATMM 331

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           L+ G DL ++  +LGH  +  TQ+Y  + +K   D
Sbjct: 332 LTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKKDD 366


>gi|311110801|ref|ZP_07712198.1| integrase/recombinase, phage integrase family [Lactobacillus
           gasseri MV-22]
 gi|311065955|gb|EFQ46295.1| integrase/recombinase, phage integrase family [Lactobacillus
           gasseri MV-22]
          Length = 295

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 121/285 (42%), Gaps = 40/285 (14%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF-ISKRRTQKIGDRSL 88
           G S  T++ Y+    Q L  +         I+ IR+++  E+R + +  ++    G  ++
Sbjct: 32  GCSDRTIKYYKVTVEQLLAKV---------IRPIRRITTEEMREYLVEYQKINNCGKTTI 82

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
                 I SF  +L++     E  IL         S  R +++ +A  LV NV+     E
Sbjct: 83  DNIRRNISSFFSWLEE-----EDYILK--------SPMRRIHKIRAEKLVKNVITDEDIE 129

Query: 149 TKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            K  D     R+ A++ LLY  G+R+ E + L   +I   +    + GKGDK R V    
Sbjct: 130 -KLRDGCSCLRDVAMIDLLYSTGIRVGELVRLNRNDINFSERECVVFGKGDKERRVYFDA 188

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN----PGVFQRYIRQLRRYLGLPLST 260
             +  ++ Y      D        LF  +  KP +     GV  R +RQL R L L    
Sbjct: 189 KSKVHLINYLRSREDD-----NPALFVSL-DKPNDRLKISGVEIR-LRQLGRKLHLD-RI 240

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             H  R S AT  +  G  +  +Q ILGH ++ TT  Y  VN  N
Sbjct: 241 HPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVNQNN 285


>gi|270294207|ref|ZP_06200409.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275674|gb|EFA21534.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 420

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 128/300 (42%), Gaps = 48/300 (16%)

Query: 32  SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           S +T+  Y+   R+   F+  FY ++ IT     +LS   IRAF    +T+      L R
Sbjct: 139 SPVTINRYKNVLRKLETFVPRFYEKDDITFH---ELSPDFIRAFDVFLKTEA----GLCR 191

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           +   I  ++K LKK        I NM   K+          K      D V L T++E +
Sbjct: 192 N--TIVRYMKCLKK--------ITNMAIAKEWMRKDPFYGYKMEQDETDPVFL-TNNELQ 240

Query: 151 WIDARNSAILYL-------LYGC--GLRISEALSLTPQNIMDDQS----------TLRIQ 191
            I  R   I  L       L+ C  GL  ++  +L P+++  D +           L  +
Sbjct: 241 AIMNREFDIPRLELVKDIFLFACFTGLAFADVSTLRPEHLEQDNNGDWWIRKGRVKLERR 300

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            K   I  VPLLP V  AIL+ Y+  P  L     LP+    +           Y++++ 
Sbjct: 301 RKSSSIANVPLLP-VPLAILKKYESHPICLKQGTCLPVVCNQKA--------NSYLKEIA 351

Query: 252 RYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            + G+  + T H  RH+FAT + L+N   L+ + ++LGH     TQ Y  V  +N  D M
Sbjct: 352 DFCGIKKNLTTHAARHTFATTVTLANNVPLQEVSAMLGHASTRMTQHYARVMDRNLKDNM 411


>gi|223369762|gb|ACM88751.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|167758156|ref|ZP_02430283.1| hypothetical protein CLOSCI_00494 [Clostridium scindens ATCC 35704]
 gi|167664053|gb|EDS08183.1| hypothetical protein CLOSCI_00494 [Clostridium scindens ATCC 35704]
          Length = 352

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 126/297 (42%), Gaps = 31/297 (10%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAF-------YTEEKITIQTIRQLSYTEI-------R 72
           IE   S  T  +Y  D R F  FL         Y+ ++ T+  + +L   +I       +
Sbjct: 37  IEPKSSAKTRINYAYDIRVFFHFLMENNPTYKNYSIDQFTLGDLERLEPVDIEEYMEYLK 96

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL--NMRNLKKSNSLPRALN 130
            +I        G++ L R +S ++SF  Y  KR+  + +  L  +M  L    ++ R   
Sbjct: 97  VYIRDDELVTNGEKGLSRKMSALRSFYNYYFKRQAISRNPTLLVDMPKLH-DKAIIRLDA 155

Query: 131 EKQALTL--VDNVLLHTSHET----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           ++ AL L  V+N     S +     K    R+ AIL LL G G+R+SE + L   ++   
Sbjct: 156 DEVALLLDFVENCGNELSGQALNYYKKTKDRDLAILTLLLGTGIRVSECVGLDLTDVDFK 215

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLN 239
            + + +  KG    +V     V KA+  Y +       P   + N    LF   + + + 
Sbjct: 216 NNGITVTRKGGNQMVVYFGEEVEKALKHYIEGDRKAATPLSGHEN---ALFLSTQKRRMG 272

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
               +  +++  R +      T H LR ++ T L    GD+  +  +LGH  ++TT+
Sbjct: 273 IQAVENMVKKYARQVTPTKKITPHKLRSTYGTSLYKETGDIYLVADVLGHKDVNTTK 329


>gi|291164815|gb|ADD80845.1| tyrosine recombinase/integrase [Rhodococcus phage ReqiDocB7]
          Length = 159

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 15/147 (10%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE-YY 214
           + A++ LL  CGLRISE  SL+  +I  D+  + + GKGDK R VP+     + + +   
Sbjct: 16  DRALVTLLGRCGLRISEVRSLSTYSIDTDERVITVIGKGDKTREVPISSQAWEDLRDRIS 75

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           +  P ++ +             PL+    +R  + +    GL  S T H  R + AT + 
Sbjct: 76  EAGPGEMLV-------------PLSDRTARRRWKDIAGKAGLGDSAT-HDGRATVATAMH 121

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +   ++R +Q  LGH    TT+ YT V
Sbjct: 122 NKTNNIRVVQEFLGHASSKTTETYTAV 148


>gi|89147486|gb|ABD62603.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 33/41 (80%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T HTLRHSFATHLL +G D+R++Q +LGH  L TT IYT+V
Sbjct: 122 TCHTLRHSFATHLLESGYDIRTVQELLGHKDLRTTMIYTHV 162


>gi|223369800|gb|ACM88769.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|83722821|gb|ABC41682.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 32/41 (78%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 122 TCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|294793950|ref|ZP_06759087.1| DNA integration/recombination/inversion protein [Veillonella sp.
           3_1_44]
 gi|294455520|gb|EFG23892.1| DNA integration/recombination/inversion protein [Veillonella sp.
           3_1_44]
          Length = 308

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 25/181 (13%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + LN+ +  TL+ N+ L +     W+       + ++   G+R SEAL+LTP++      
Sbjct: 116 KYLNQFELHTLLVNLKLTSEINWDWL-------ILIIAKTGMRFSEALALTPKDFDFSHQ 168

Query: 187 TLRIQGKGDKIRIVPLLP-----SVRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPL 238
           +L +    D       LP     SVRK  L++  +  F      L    P+F  ++G+  
Sbjct: 169 SLIVDKTWDYKGNGGFLPTKNRSSVRKIQLDWQTIIKFSELIKGLPEDKPIF--VKGRVF 226

Query: 239 NP---GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           N    GV +RY ++L    G+P+  + H LRH+ A+ LL  G  + S+   LGH  ++TT
Sbjct: 227 NSTINGVLERYCKKL----GIPV-ISIHGLRHTHASLLLFAGVSIASVARRLGHASMTTT 281

Query: 296 Q 296
           Q
Sbjct: 282 Q 282


>gi|300863888|ref|ZP_07108808.1| Integrase family protein [Oscillatoria sp. PCC 6506]
 gi|300338109|emb|CBN53954.1| Integrase family protein [Oscillatoria sp. PCC 6506]
          Length = 288

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 120/284 (42%), Gaps = 47/284 (16%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G SK T   Y    ++FL F           + +  ++  E++ F +      +   + +
Sbjct: 23  GKSKRTQSYYRLYAQRFLEFAG---------KPLLLVTLAEVQGFATSLEQNNLSASTQR 73

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA--------LNEKQALTLVDNV 141
             ++ +KS L +  K +I         RN+     LP+A        L+E + LT++D  
Sbjct: 74  TIMAAVKSLLSFGTKIEILP-------RNVGAPLPLPKAPDTLSERLLSEIEVLTMID-- 124

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            L +       + RN  I+  LY  G R+SE  AL     +I +++  + + GKG K R 
Sbjct: 125 -LES-------NLRNKLIIKTLYYGGFRVSELCALKWKHLSIRNNKGQITVTGKGIKTRT 176

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-YIRQLRRYLGLPL 258
           V L+P+       + +L     +     P+FR  +      G  QR ++ ++ +    P 
Sbjct: 177 V-LIPASL-----WVELQRLRGDSGENEPVFRSQKHSHDGQGHLQREWVHKIVQAAAKPA 230

Query: 259 STTA----HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             T     HTLRH+ A+H L  G  +  +   LGH  ++ T  Y
Sbjct: 231 KITGKVSPHTLRHAHASHALERGAKIHLVSETLGHSSIAITSRY 274


>gi|298345180|ref|YP_003717867.1| phage family integrase/recombinase protein [Mobiluncus curtisii
           ATCC 43063]
 gi|298235241|gb|ADI66373.1| phage family integrase/recombinase protein [Mobiluncus curtisii
           ATCC 43063]
          Length = 222

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 65/137 (47%), Gaps = 15/137 (10%)

Query: 169 RISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           R  E   +   +I +D    +L + GKG+K R+VP+   +  +I         DL     
Sbjct: 85  RSGEVARVNAGDITEDLLGYSLVVHGKGNKQRVVPITDGLAASIR--------DLAEPGT 136

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
             +F G  G  + P    R+I +L   L LP   T HTLRH F TH  +   DL ++Q +
Sbjct: 137 GWVFPGADGGHVTP----RWISKLGANL-LPSPWTMHTLRHRFGTHAYAGDRDLVAVQRL 191

Query: 287 LGHFRLSTTQIYTNVNS 303
           LGH  +STTQ Y    S
Sbjct: 192 LGHASVSTTQRYVEPPS 208


>gi|51571648|emb|CAH19070.1| DNA integrase [Pseudomonas aeruginosa]
          Length = 305

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 74/165 (44%), Gaps = 37/165 (22%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207
           LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R         
Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198

Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                                  +A   +     F  + +   P    +R   +    FQ
Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           R  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH
Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGH 303


>gi|298375507|ref|ZP_06985464.1| integrase [Bacteroides sp. 3_1_19]
 gi|298268007|gb|EFI09663.1| integrase [Bacteroides sp. 3_1_19]
          Length = 330

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 125/284 (44%), Gaps = 38/284 (13%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS----KRRTQKIGD 85
           G S+ TL  Y     + L+ L+           I  ++ T+IR ++S    + ++ K+  
Sbjct: 67  GCSEKTLTYYRNTIERLLVTLSL---------AICHITTTDIRTYLSDYQEEHQSSKVTI 117

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            +++R  S   SF  +L+      +S +  +  +K  + +   L+++Q   L D      
Sbjct: 118 DNMRRIFS---SFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQLRD------ 168

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           S  TK    R+ AI+  L   G+R+ E + L+ ++I   +    + GKG+K R+V     
Sbjct: 169 SCTTK----RDLAIIDFLSSTGIRVGELVKLSREDIDFHERQCVVFGKGNKERVVYFNAR 224

Query: 206 VRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            +  + +Y     D  P  L +++  P  R      L     +  IR++ + L +P    
Sbjct: 225 TKLHLQQYLNERTDSNPA-LFVSLNSPHSR------LTISGVEVRIRKMGQALSMP-KVH 276

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            H  R + AT  +  G  +  +Q +LGH R+ TT  Y  VN  N
Sbjct: 277 PHKFRRTLATMAIDKGMPIEQVQRLLGHVRIDTTLHYAIVNQNN 320


>gi|297561148|ref|YP_003680122.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296845596|gb|ADH67616.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 329

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 76/146 (52%), Gaps = 9/146 (6%)

Query: 167 GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
           G+R +E LSL  +++     +  +R+ GKG   R++P+   + +A+LE Y +   +    
Sbjct: 160 GMRSAEMLSLRVESVGGRSGERRIRVVGKGGGERVLPIEVPL-EALLEAYLVSRRERFGV 218

Query: 225 IQL--PLFRGIRGKPLNPGVFQRYIRQLRRYLGL----PLSTTAHTLRHSFATHLLSNGG 278
           ++   PL    RG+ L  G  Q  ++Q  ++ G+       T  H LRH+FAT L  +G 
Sbjct: 219 VRGSDPLLVDNRGEGLRRGGLQYLVQQCYKHAGVHDRVARGTLVHALRHTFATRLAEDGA 278

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSK 304
            +  I  +LGH  ++++Q Y  V ++
Sbjct: 279 SVSEIMHLLGHASVASSQAYIEVTAR 304


>gi|198282467|ref|YP_002218788.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198282806|ref|YP_002219127.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198284131|ref|YP_002220452.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218665325|ref|YP_002426785.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218666072|ref|YP_002425002.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218667691|ref|YP_002425322.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198246988|gb|ACH82581.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198247327|gb|ACH82920.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198248652|gb|ACH84245.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218517538|gb|ACK78124.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218518285|gb|ACK78871.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218519904|gb|ACK80490.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 313

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 110/267 (41%), Gaps = 33/267 (12%)

Query: 71  IRAF---ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSL 125
           +R+F   +  R  + IG  ++   L+G  S   Y  K+   +T        R +  +  L
Sbjct: 28  LRSFCRAVGDRPIETIGADAVSIFLNGKGSVTAYWYKKYHVLTGCYRFALARGMVTAIPL 87

Query: 126 PRALNEKQALTLVDNVLLHT-------------SHETKWIDARNSAILYLLYGCGLRISE 172
           PR++ ++     V  +  H              +  ++  D    A+L L+YG GLRISE
Sbjct: 88  PRSVPKQDGPIFVPYIYSHAELKRLIDVLPALCAGRSRIDDYVFKALLLLMYGAGLRISE 147

Query: 173 ALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           ALSL   ++   Q+ L + + K  K RIVPL   + + + EY        +     P F 
Sbjct: 148 ALSLHIHDVDLQQTILYVRETKFYKTRIVPLGKDLTQILNEYIAKRNNRYSAATDAPFFC 207

Query: 232 GIRGKPLNPGVFQRYIRQLR------RYLGLPLSTTAHTLRHSFATHLL----SNGGDLR 281
              G PL+        R++R      +  G       H LRHS A H L      G DLR
Sbjct: 208 FRDGTPLSRSAAHGLFRRVRAKADVLKEGGPRHQPRLHDLRHSAAVHRLIAWYRCGADLR 267

Query: 282 S----IQSILGHFRLSTTQIYTNVNSK 304
                + + LGH  LS TQ Y  +  +
Sbjct: 268 DLLPKLATYLGHVDLSATQRYLTMTPE 294


>gi|150400371|ref|YP_001324138.1| phage integrase family protein [Methanococcus vannielii SB]
 gi|150013074|gb|ABR55526.1| phage integrase family protein [Methanococcus vannielii SB]
          Length = 322

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 85/168 (50%), Gaps = 13/168 (7%)

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIR 198
           N+++ +   TK    R++ I+  L+  G RISEAL+LT  +   ++ T  ++  KG+  R
Sbjct: 145 NIVVESKSRTK---IRDATIIRFLWDSGCRISEALNLTYGDSDLEEGTFVLRNTKGNAER 201

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQRYIRQLRRYL 254
            V +       ++ YY    +++    +  LF+   G+P+  G    +F++ + +L++  
Sbjct: 202 TV-VCSRDTLDVINYY--VQYNVKKGSKDKLFQNSDGEPIGRGWIGEIFRKAVDRLKKEG 258

Query: 255 GLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            +P +     H+LRH  A  LL  G  +  ++  LGH  L TT  Y++
Sbjct: 259 RIPANKKVVVHSLRHGRAVDLLEKGQPIDIVKEYLGHKSLDTTLFYSH 306


>gi|114217147|dbj|BAF31250.1| integron integrase [uncultured bacterium]
          Length = 148

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
           R IR   L+   F R ++   R   +    +AHT RHS+ATHLL NG D+R+I  +LGH 
Sbjct: 79  RKIRYHALS-ATFGRNMKTAARLAYIDKKISAHTFRHSYATHLLQNGIDIRTISGLLGHK 137

Query: 291 RLSTTQIYTNV 301
            L TT IYT+V
Sbjct: 138 NLQTTMIYTHV 148


>gi|254497199|ref|ZP_05110010.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
 gi|254353582|gb|EET12306.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
          Length = 214

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 14/158 (8%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-------RIQGKGDKIRIVPLLPSV 206
           ARN+A++Y  +G GLR  E  SLT  ++ D    L       R   KG+K R   L    
Sbjct: 49  ARNTALVYCSFGLGLRAKEIASLTIADVADAHYQLLQELSLKRSMTKGEKQRQAYLTHKK 108

Query: 207 RKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            + +L+ +  D+      ++    LF+  R         Q++ + L    G+    ++H+
Sbjct: 109 VREVLQAHLNDIK----GMSHDKALFQTQRQSRFTANTLQKWFKALYDKAGIH-GASSHS 163

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            R +F T L+  G D++++  + GH  + TT IY   N
Sbjct: 164 GRRTFITRLIEQGADIKAVSRLAGHANIVTTAIYVEDN 201


>gi|89147384|gb|ABD62552.1| integrase [uncultured bacterium]
 gi|223369764|gb|ACM88752.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|126175754|ref|YP_001051903.1| phage integrase family protein [Shewanella baltica OS155]
 gi|125998959|gb|ABN63034.1| phage integrase family protein [Shewanella baltica OS155]
          Length = 311

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 108/242 (44%), Gaps = 28/242 (11%)

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY---LKKRKITTESNILNMRNLKKSNSLP 126
           +IRA ++     +   RS+ R++  IK+ +K    + K  ++  +N+  +  +K      
Sbjct: 54  QIRAVMTH---AQWSARSINRAMIAIKNIVKVAALMNKADLSQVANLQTINQVKHGEHQG 110

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             L+ +Q    V  VL +   +      RN  I  L  G GLR SE  +L   +   +  
Sbjct: 111 TPLSTEQ----VTAVLDYLRAQKGTFATRNLVIFSLFLGTGLRRSELSALMLSDYDANLH 166

Query: 187 TLRIQ-GKGDKIRIVPLLPSVRKAILEY---------YDLCPFDLNLNIQLPLFRGIRGK 236
           TL +  GKG+K R + L   V + +L +         Y +C   L   ++L        +
Sbjct: 167 TLTVAAGKGNKSRTLFLPEWVEQNLLAWLKLRQRQQGYLVCKSTLTGKLKLT-------E 219

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           P +P    R ++     LG+  + + H LR +F T LL    D+ +++ + GH  +STT 
Sbjct: 220 PTSPTALYRLVKDTLYELGVD-NVSPHDLRRTFITRLLEQNVDINTVRQMAGHADISTTT 278

Query: 297 IY 298
           IY
Sbjct: 279 IY 280


>gi|317484015|ref|ZP_07942950.1| phage integrase [Bilophila wadsworthia 3_1_6]
 gi|316924742|gb|EFV45893.1| phage integrase [Bilophila wadsworthia 3_1_6]
          Length = 311

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 116/286 (40%), Gaps = 36/286 (12%)

Query: 42  DTRQFLIFL-AFYTEEKITIQ---------------TIRQLSYTEIRAFISKRRTQKIGD 85
           D R  L FL A Y     TI+               +  QL   +I A++     + +  
Sbjct: 22  DERVILFFLHAVYANSTKTIELYALYVIGLFNYAKKSFNQLKAWDIDAYLRHLTNKGLKP 81

Query: 86  RSLKRSLSGIKSFLKYLKKRKITT--ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
            S   + + ++SF ++L    + T   +  L  +      SLP  L+       ++   L
Sbjct: 82  SSRNTAAATLRSFFRHLVDSGVCTVNPAAFLKRKRNDGKGSLPGHLSHSLGRDELER--L 139

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVP 201
               E      R+  +  +L+  GLR  EA+SL   N+++ Q    L + GKG K R V 
Sbjct: 140 FAGMEEVGAPFRDIVLFRVLFMTGLRAEEAVSLKWMNVINWQGRWYLDVLGKGSKARRV- 198

Query: 202 LLPSVRKAILEYYDLCPFDLNLNI----QLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG 255
            LP   +A LE       +L  +     + P+F  +R  G+P++       +++    + 
Sbjct: 199 YLPQKAQAALE-------ELRRHTSPRPEYPIFENLRHRGRPISRHGLYALVKKWSSLVI 251

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                + H  RHS  T L S G  L SIQ++ GH  + TT  Y   
Sbjct: 252 SRGDVSPHWFRHSCFTQLASRGARLESIQALAGHANIQTTMHYNEA 297


>gi|223369768|gb|ACM88754.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|167623237|ref|YP_001673531.1| integrase family protein [Shewanella halifaxensis HAW-EB4]
 gi|167353259|gb|ABZ75872.1| integrase family protein [Shewanella halifaxensis HAW-EB4]
          Length = 341

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 65/144 (45%), Gaps = 21/144 (14%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           + I+ +    G R SEA  L    I  ++ T  ++ KG K R VP+         E  D 
Sbjct: 199 TTIVLICLATGCRWSEAEGLRGSQIAHNRITF-VKTKGKKNRTVPIAK-------ELADK 250

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
            P       + PLFR  R        F+R I+  R  L  P     H LRH+FA+H + N
Sbjct: 251 IP-----RARGPLFRPCRKS------FERAIK--RTKLNFPDRQMTHILRHTFASHFMMN 297

Query: 277 GGDLRSIQSILGHFRLSTTQIYTN 300
           GG++  ++ ILGH  +  T  Y +
Sbjct: 298 GGNILVLKQILGHSDIKDTMRYAH 321


>gi|56963097|ref|YP_174824.1| phage-related integrase/recombinase [Bacillus clausii KSM-K16]
 gi|56909336|dbj|BAD63863.1| phage-related integrase/recombinase [Bacillus clausii KSM-K16]
          Length = 321

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 103/220 (46%), Gaps = 14/220 (6%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALTLVDNVLLHTSHET 149
           L  +++   +L K+++  E+ + +++ LK  K + +P + ++ Q L        + +   
Sbjct: 99  LRAVRALFNFLFKKRLIPENPVADLKLLKNIKGDIIPFSKDQLQRL-------FNQADRR 151

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRIVPLLPSVRK 208
            +   RN  ++ ++   G+R+ E   +   +++ DD S +    K   +R VP+     K
Sbjct: 152 TFTGLRNYVMMMVMLDTGVRVKELCQIDMVDVLWDDNSIVIRHPKNGYVRRVPISEETIK 211

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRH 267
           A+ +Y +    ++  N    LF  +  K ++    Q ++ Q  +   +  +  + HT RH
Sbjct: 212 ALEQYVNHRGQNIGNN---ALFVTLDDKRISKRQVQNFLSQYGKGASITDVRCSPHTFRH 268

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +FA   L  G ++  +Q ILGH  L   ++Y ++ S   G
Sbjct: 269 TFAKMALQGGANMFELQQILGHSSLEMVRVYVHLFSNEIG 308


>gi|156740071|ref|YP_001430200.1| integrase family protein [Roseiflexus castenholzii DSM 13941]
 gi|156231399|gb|ABU56182.1| integrase family protein [Roseiflexus castenholzii DSM 13941]
          Length = 337

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 80/184 (43%), Gaps = 22/184 (11%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR----IQGKGDKIRIVPLLPSVRKAI 210
           RN+A+L+ L+  G RISE LSL   ++  D   +     + GKG + R V L    ++AI
Sbjct: 152 RNAALLHTLFSTGARISEVLSLNVGDVRADNGRIVPRAFVIGKGQRRRAVFLRAHAQQAI 211

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGK----------PLNPGVFQRYIRQLR-----RYLG 255
           L Y             L +  G RG            +  G   R   Q+      R   
Sbjct: 212 LRYLHARHAAFPRADALFISHGPRGAGGRLGRIAAWEIVTGAAHRVADQIECEGRIREAR 271

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
              + T HT RH  AT LL+ G  L  + +ILGH   + T+I     +++  + + E++D
Sbjct: 272 ALRTVTPHTFRHFVATWLLNEGAQLSEVSAILGH---ANTRITEQYYARHTDEQLQELHD 328

Query: 316 QTHP 319
           Q  P
Sbjct: 329 QFAP 332


>gi|89147381|gb|ABD62551.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 40/59 (67%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            Q+ I++  R   L  + + HTLRHSFATHLL  G D+R +Q +LGH  ++TT IYT+V
Sbjct: 104 LQQAIKRAARAANLSHNVSPHTLRHSFATHLLEFGTDIRVLQELLGHQHVNTTMIYTHV 162


>gi|83814492|ref|YP_444224.1| integrase/recombinase [Salinibacter ruber DSM 13855]
 gi|83755886|gb|ABC43999.1| integrase/recombinase [Salinibacter ruber DSM 13855]
          Length = 451

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 78/183 (42%), Gaps = 37/183 (20%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKG--DKIRIVP--LLPSVRK-- 208
           N    +LLYG GLR+SEAL L  + +    S L +  GKG  D+  ++P  L   +R+  
Sbjct: 249 NRLTAHLLYGSGLRLSEALRLRVKELDVGTSRLHVWDGKGGTDRTTVLPERLHGPLRRHL 308

Query: 209 ----------------------AILEYYDLCP--------FDLNLNIQLPLFRGIRGKPL 238
                                 AI E Y            F      + P    +R    
Sbjct: 309 KTVKAQHEADCADGVGGVYLPDAIAEKYPTAKTEWRWQYVFPSTTLSEDPRSGAVRRHHR 368

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +    QR +++      +    T HTLRHSFATH L +G D+R+IQ +L H +L TT  Y
Sbjct: 369 SDSAVQRAVKKAADATDIEKRATCHTLRHSFATHRLQDGTDVRTIQKLLAHEQLRTTMQY 428

Query: 299 TNV 301
            +V
Sbjct: 429 VHV 431


>gi|295841016|dbj|BAJ06888.1| integron integrase intI [uncultured bacterium]
          Length = 421

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 125/296 (42%), Gaps = 66/296 (22%)

Query: 22  LQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-LSYTEIRAFISK 77
           L+ L IE   R  S  T Q+Y     +FL+F +F TE  IT+  +   + Y  ++     
Sbjct: 149 LERLVIEIRSRQYSIRTEQAYSDWVLRFLVFSSFETERDITVDKVSVFIEYLAVK----- 203

Query: 78  RRTQKIGDRSLKRSLSGIK-SFLKYLKKRKITTE-SNILNMRNLKKSNSLPRALNEKQAL 135
                   R++  S  G   + L +L KR +  E    ++ +  KK   LP  L+  +  
Sbjct: 204 --------RNVAASTQGQALNALVFLFKRVLHVELEEKIDFQRAKKPRRLPVVLSRGE-- 253

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKG 194
             ++ +L   SH+       +  +  L+YG GLR+ E + L   +I  D   + + QGKG
Sbjct: 254 --INELLAAVSHDL------HRLMASLMYGAGLRLMECIRLRVFDIDFDYGQIVVRQGKG 305

Query: 195 DKIRIVP----LLPSVRKAILEYYDLCPFDLNL---NIQLP---------LFRGIRGKPL 238
           +K R+VP    L P + + I +   L   DL      + LP           R +R + L
Sbjct: 306 NKDRVVPLPEKLKPELMQQINKVAQLDKKDLEAGYGEVVLPGALSRKYKNAARELRWQYL 365

Query: 239 NPGV--------------------FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
            P V                     Q+ +++    +GL    + H LRH+FATHLL
Sbjct: 366 FPSVKLSTDPRSKKTMRHHLHENNIQKSVKKSAEQIGLMKKVSCHALRHTFATHLL 421


>gi|223369774|gb|ACM88757.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|223369776|gb|ACM88758.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|114319153|gb|ABI63576.1| integrase [Klebsiella pneumoniae]
          Length = 304

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 117/292 (40%), Gaps = 58/292 (19%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGH 303


>gi|296164532|ref|ZP_06847103.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295900132|gb|EFG79567.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 231

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 74/152 (48%), Gaps = 19/152 (12%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAI 210
           D R   +L L    GLR +E   +  +++    +   L + GKG+K+R+VPL   +   I
Sbjct: 85  DPRVRLMLRLAAEAGLRRAEIARVHRRDLTRGPAGAELLVHGKGEKLRVVPLGDDLAATI 144

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
                        +    LF G     L+P    R++ +L     LP   TAHTLRH FA
Sbjct: 145 A------------DCDAYLFPGDDEGHLSP----RWVGKLM-AGALPDHWTAHTLRHRFA 187

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           T       +LR++Q++LGH  ++TT+ YT V+
Sbjct: 188 TRAYRGSRNLRAVQTLLGHSSVATTERYTAVD 219


>gi|229004126|ref|ZP_04161927.1| integrase/recombinase [Bacillus mycoides Rock1-4]
 gi|228756987|gb|EEM06231.1| integrase/recombinase [Bacillus mycoides Rock1-4]
          Length = 316

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 6/147 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI+ LL   G+R+ E +++  ++I     T+ + GK  + + +P+   + K I E+ 
Sbjct: 150 RDHAIIVLLLSTGIRLGELVNIQWKDIDLVNQTVVLFGKARRQQSIPITDKLTKEICEWR 209

Query: 215 DLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFAT 271
                +L     LP  LF    GK L P   +   ++L + +    +  + HT RHSFA 
Sbjct: 210 IFVEKELG---SLPQYLFTSREGKQLTPNAVKLIFQRLSKVMNFKDVRLSCHTFRHSFAH 266

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIY 298
             +  G D+ ++Q +L H  L  T+ Y
Sbjct: 267 RCIMQGMDVFTLQKLLRHSNLRMTERY 293


>gi|196041298|ref|ZP_03108592.1| integrase/recombinase [Bacillus cereus NVH0597-99]
 gi|196027783|gb|EDX66396.1| integrase/recombinase [Bacillus cereus NVH0597-99]
          Length = 330

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 132/286 (46%), Gaps = 32/286 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE------IRAFISKRRTQK 82
           R L   T++ Y  + + FL  L   TE++I +  +R  + TE      +  ++   R  K
Sbjct: 41  RNLRPFTIKYYLNELQAFLNLL---TEQEIDVSLLRPYNMTEEHVKENVILYMKNYRGIK 97

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +   S+   L  +++F  +L K+K    + + N++ LK    +    +++Q      N L
Sbjct: 98  VV--SINTRLRALRAFYNFLYKQKHIPRNPMENIKLLKDRKRIIPTFSKEQL-----NKL 150

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVP 201
            H  +   +   R+  I+ L+   G+R++E + L+ ++I  + S L I+  K  + R VP
Sbjct: 151 FHQPNLRTFTGVRDYTIMMLMLETGIRVNELVGLSVKDIRWEDSLLVIRNAKSYRERQVP 210

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRY-----IRQLRRYLG 255
           +   ++  + +Y  +  +  +      LF  + G  L   G+ QR      + Q++    
Sbjct: 211 IQRDMKNQLKKYIAIRGYVEST----ALFVTVDGTRLTRRGIQQRISIYGNMAQIK---- 262

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             +  + HT RH+FA   +  G ++  +Q+ILGH  +   + Y N+
Sbjct: 263 -DVRCSPHTFRHTFAKLSVQQGANIFELQAILGHTNMEIVKTYVNL 307


>gi|89147359|gb|ABD62540.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 41/63 (65%)

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +  + Q  +RQ      +    T HTLRHSFATHLL +G ++R+IQ +LGH  ++TT IY
Sbjct: 100 DESMLQAALRQAVVASAINKPATCHTLRHSFATHLLDSGYNIRTIQDLLGHKDVATTMIY 159

Query: 299 TNV 301
           T+V
Sbjct: 160 THV 162


>gi|89147655|gb|ABD62686.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|302064330|emb|CBL51506.1| transposase A [Staphylococcus aureus]
          Length = 361

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 135/304 (44%), Gaps = 57/304 (18%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ--LS 67
           ++FELL +   WL+        + + LQS E               E+ T+ TI    +S
Sbjct: 70  INFELLADFVGWLR---YPTANNVIDLQSKEA------------IREETTVNTILNAVMS 114

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
           + +  + + + ++  +  ++  R+  G   FL ++ K +   + N+L +R  KK     R
Sbjct: 115 FLDYLSRLGEFKSIDVFKQAKGRNFKG---FLHHVNKGRY--QKNVLKLRVKKKQ---IR 166

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL----------- 176
            L  ++   ++D    HT         R+  IL L+Y  GLRI E LSL           
Sbjct: 167 TLTAEEVKQIIDAC--HTK--------RDKLILMLMYEGGLRIGEVLSLRLEDIATWDNQ 216

Query: 177 ---TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL--EYYDLCPFDLNLNIQLPLFR 231
              TP+++  +++ ++++ K   I +   L S+    L  EY +    D    + + L  
Sbjct: 217 IHLTPRDVNVNEAYIKLR-KERTIHVSKELMSLYTDYLVYEYSEELEHDY---VFISLKE 272

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           G  GKPL        +R++ +  G+    T+H LRH+ AT L+  G D+  +Q  LGH  
Sbjct: 273 GYFGKPLKYQSVLDLVRRIVKRTGIEF--TSHMLRHTHATQLIREGWDVAFVQKRLGHAH 330

Query: 292 LSTT 295
           + TT
Sbjct: 331 VQTT 334


>gi|223369770|gb|ACM88755.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 32/41 (78%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 122 TCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|89147510|gb|ABD62615.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 1/80 (1%)

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
           NL++  P    IR   ++  V Q  +R+  R   +    T HTLRHSFATHLL  G ++R
Sbjct: 84  NLSVD-PRSGKIRRYHVSDKVLQSALRRAVREADIQKHATVHTLRHSFATHLLLAGTNIR 142

Query: 282 SIQSILGHFRLSTTQIYTNV 301
            +Q +LGH  + TT IYT+V
Sbjct: 143 EVQELLGHANVETTMIYTHV 162


>gi|291166427|gb|EFE28473.1| site-specific recombinase, phage integrase family [Filifactor
           alocis ATCC 35896]
          Length = 372

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 110/231 (47%), Gaps = 19/231 (8%)

Query: 85  DRSLKRSLSGIKSFLKYL-----KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           ++SL R  S + S  K+L      K  +    N + M  L        +++E   L  V 
Sbjct: 122 NKSLSRKKSSLTSLFKFLFRNEQMKHNLIDGFNPIKMPKLNPDAIKRLSIDETNELIHVI 181

Query: 140 NVLLH-TSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           N  +  T+HE  + +    R+ AI+ +    GLR+SE   L   +I   +  + +  K  
Sbjct: 182 NTGIGLTNHEKIYWEKTKYRDKAIIMIFITLGLRLSELEQLNITSINFKRKEILVFRKRG 241

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQL-RRY 253
           K  ++P   ++  +IL+Y +L    + +N +  PLF  ++GK +      R IRQ+ ++Y
Sbjct: 242 KEVLMPFNDTIEHSILQYINLERNHIIINDENDPLFLSLQGKRMTG----RQIRQMIKKY 297

Query: 254 LGLPLST----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             + L      + H LR + A+ L+  G  +  +Q++L H  ++TTQIY +
Sbjct: 298 TSIVLGDNEGYSPHKLRSTLASSLIERGFSIYDVQNLLDHDNVTTTQIYAS 348


>gi|223587858|emb|CAX36644.1| integron intagrase IntI protein [Citrobacter sp. JEK-2009]
          Length = 136

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 38/58 (65%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT
Sbjct: 79  TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 136


>gi|25986886|gb|AAN16071.1| site-specific recombinase [Pseudomonas stutzeri]
          Length = 299

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 75/176 (42%), Gaps = 43/176 (24%)

Query: 159 ILYLLYGCGLRISEALSLTPQNI--------------MDDQSTL---------------- 188
           +  LLYG G+R+ EAL L  +++              M D+ T+                
Sbjct: 127 VCSLLYGTGMRLMEALRLRVKDVDFSRHEILIRDGKGMKDRVTMLPRSLVQPLRRHLAVV 186

Query: 189 -------RIQGKGDKIRIVPLLPSVRKAILEY---YDLCPFDLNLNIQLPLFRGIRGKPL 238
                  R QG+GD      L     KA  E+   Y      L+++   P    +R   L
Sbjct: 187 KAIHDSEREQGRGDVWLPFALARKYPKAPKEWGWQYVFPASGLSVD---PRSGAVRRHHL 243

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           +    QR  ++  R  G+    T HTLRHSFATHLL +G D+R+ Q +LGH  + T
Sbjct: 244 DEKRIQRAFKRAIRGAGIVKPATPHTLRHSFATHLLESGQDIRTDQELLGHSDVKT 299


>gi|186896553|ref|YP_001873665.1| integrase family protein [Yersinia pseudotuberculosis PB1/+]
 gi|186699579|gb|ACC90208.1| integrase family protein [Yersinia pseudotuberculosis PB1/+]
          Length = 327

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 19/149 (12%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           +D  N  +  L    G R  EA+ L  ++I+D++ T  +  K  K R VP+   V     
Sbjct: 177 LDGDNRRVAILCLSTGARWGEAIKLRTEHIIDNRITF-VATKNGKQRTVPISRDV----- 230

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
            + DL      L      +           +F++ ++ ++    LP     H LRH+FAT
Sbjct: 231 -FNDLTAMKSGLLFNDAAYL----------IFRQKLKSVK--TDLPQGQATHVLRHTFAT 277

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           H + NGG++ ++Q ILGH  +  T +Y +
Sbjct: 278 HFMINGGNIITLQRILGHSTIQQTMLYAH 306


>gi|302878141|ref|YP_003846705.1| integrase family protein [Gallionella capsiferriformans ES-2]
 gi|302580930|gb|ADL54941.1| integrase family protein [Gallionella capsiferriformans ES-2]
          Length = 664

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 25/177 (14%)

Query: 154 ARNSAILYLLYGCGLRISEAL--------SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           AR   +L   Y  GLRISE +        ++   N +  +  L++ GKG K R VPL   
Sbjct: 470 ARLRFVLPFAYATGLRISELVDAKVSRMYTMPLSNEIGVRWMLKVCGKGGKWRAVPLSSE 529

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYLGLPLST---- 260
           V +A+  Y++     L++    P    +  +     V    + + LR + G    +    
Sbjct: 530 VIQALQTYFEYRGLSLDITSNPPDTPLVSSEIGTGSVTTSALSKSLRSFFGEIAQSLMMD 589

Query: 261 ------------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
                       TAH LRH+  +HL  +G  L  +Q +LGH  L TT IYT+ + +N
Sbjct: 590 GKHIEAKAFDHATAHWLRHTCGSHLALSGVPLNIVQRLLGHTSLQTTSIYTDTSDEN 646


>gi|239625431|ref|ZP_04668462.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519661|gb|EEQ59527.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 278

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 9/146 (6%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R S +L  +   G+R+SE   +T + +   Q+ +  +GK    R+V L   + +A+  Y 
Sbjct: 120 RLSMLLQTICATGIRVSEVRHITVEAVRAGQAKVDCKGKN---RVVFLPKVLCRALQRYC 176

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHL 273
                D+      P+F+   GKPLN     R ++ L +  G+ P     H LRH FA   
Sbjct: 177 RRYGIDIG-----PVFKTASGKPLNRTNIWRDMKALCKRAGVEPGKVFPHNLRHLFARTY 231

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYT 299
                DL  +  +LGH  ++TT+IYT
Sbjct: 232 YKLEKDLSRLADLLGHSSVTTTRIYT 257


>gi|188526796|gb|ACD62279.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 39/59 (66%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           FQR  ++     G+    T HTLRH FAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 100 FQRAFKRAVEQAGVAKPATPHTLRHLFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|54302869|ref|YP_132862.1| hypothetical protein PBPRB1190 [Photobacterium profundum SS9]
 gi|46916293|emb|CAG23062.1| hypothetical protein PBPRB1190 [Photobacterium profundum SS9]
          Length = 141

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 3/110 (2%)

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            KG K R +PL      A+  ++        L    P    +    ++ G  Q+ +R + 
Sbjct: 8   AKGGKDRFIPLPRRTLYALRYFWQTHKHPCFL---FPSHNRVVDNFMDRGGVQKAMRVII 64

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  G+  S + H LRHS+ATHLL  G DLRS+Q +LGH  L++T  YT++
Sbjct: 65  KECGITKSISPHNLRHSYATHLLEQGLDLRSVQHLLGHNSLNSTARYTHL 114


>gi|310658541|ref|YP_003936262.1| tyrosine recombinase [Clostridium sticklandii DSM 519]
 gi|308825319|emb|CBH21357.1| putative tyrosine recombinase [Clostridium sticklandii]
          Length = 371

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 126/279 (45%), Gaps = 45/279 (16%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQ------------KIGDRSLKRSLSGIKSFLKYLKK 104
           +ITI+   +L   +I  +I +  T+            K  +RSL R  S + S  KY+  
Sbjct: 81  EITIEQFSKLKARDINYYIGEYCTRYLKSINGNDYLFKNDNRSLARKKSSLSSLFKYMY- 139

Query: 105 RKITTESNILNMRN-LKKSNSLPRALNE---KQALTLVDNVL----LHTSHETKW--IDA 154
           R    E+NI +  N +K     P A+ +    +   ++D V     L    +  W     
Sbjct: 140 RNNQLENNITDGFNPIKLPKPQPDAIKKLAVDEVAIMLDIVSTGEGLTDKEKIYWEKTKL 199

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AIL L    GLR+SE   L   +    +   +I  K  K  ++PL  +++KA+ +Y 
Sbjct: 200 RDKAILLLFVTYGLRLSEIQQLNLSSFNYGRDEFKIYRKRSKEALMPLNSTIKKALDDYI 259

Query: 215 -------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLSTT----- 261
                  DL    L+ N +  LF  I+ K L      + IR+L ++Y  L + TT     
Sbjct: 260 SCERPNSDL----LDENNEDALFLSIQNKRLT----MKAIRELVKKYTSLAMGTTRDKGY 311

Query: 262 -AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
             H LR + A+ L+  G  +  ++++L H  ++TTQ+Y+
Sbjct: 312 SPHKLRATAASSLIDYGFSIYDVKTLLDHENITTTQLYS 350


>gi|288927179|ref|ZP_06421059.1| putative nicotinate-nucleotide pyrophosphorylase [Prevotella buccae
           D17]
 gi|315608605|ref|ZP_07883588.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
 gi|288336048|gb|EFC74449.1| putative nicotinate-nucleotide pyrophosphorylase [Prevotella buccae
           D17]
 gi|315249708|gb|EFU29714.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
          Length = 335

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 105/241 (43%), Gaps = 23/241 (9%)

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA---LTLVDN 140
            +R+L    S I  F +Y+          +  M   K  + +PR    ++        D+
Sbjct: 68  SERTLYDKWSIISQFSRYMCHCGFVC--YVPPMPRQKDKSFIPRVFTHEEIERFFIAADS 125

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRI 199
           +  H    T  + +  + +  +LY  G+RI EAL+L  +++  ++ T+ I + K  + RI
Sbjct: 126 LRFHNIQPTLCLFSMPT-LFRVLYATGIRIGEALNLNIEDVNLEKGTILIRKSKNQRQRI 184

Query: 200 VPLLPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           VP+ PS+   +   + Y D  P     + + PLF    G  +  G   ++ R++ +   +
Sbjct: 185 VPITPSLDAVLHQYISYRDRMPLKSIRHKESPLFISHTGGRVLKGTAYKWFRKILKLCDI 244

Query: 257 PL-----STTAHTLRHSFATHLL----SNGGDLRSIQSIL----GHFRLSTTQIYTNVNS 303
           P          H LRH+FA H L     +G D+  +  IL    GH  L  T+ Y  + S
Sbjct: 245 PFIGGNRGPRVHDLRHTFAVHSLMKQVKSGKDMYCLLPILSVFMGHKTLLGTESYIRLTS 304

Query: 304 K 304
           +
Sbjct: 305 E 305


>gi|222094274|ref|YP_002528333.1| site-specific integrase/recombinase [Bacillus cereus Q1]
 gi|229042377|ref|ZP_04190125.1| Integrase/recombinase [Bacillus cereus AH676]
 gi|221238331|gb|ACM11041.1| site-specific integrase/recombinase [Bacillus cereus Q1]
 gi|228726924|gb|EEL78133.1| Integrase/recombinase [Bacillus cereus AH676]
          Length = 330

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 133/286 (46%), Gaps = 32/286 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE------IRAFISKRRTQK 82
           R L   T++ Y  + + FL  L   TE++I +  ++  + TE      +  ++   R  K
Sbjct: 41  RNLRPFTIKYYLNELQAFLNLL---TEQEIDVSILKPYNMTEEHVKENVILYMKNYRGIK 97

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +   S+   L  +++F  +L K+K    + + N++ LK    +    +++Q      N L
Sbjct: 98  VV--SINTRLRALRAFYNFLYKQKHIPRNPMENIKLLKDRKRIIPTFSKEQL-----NKL 150

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVP 201
            H  +   +   R+  I+ L+   G+RI+E + L+ ++I  + S L I+  K  + R VP
Sbjct: 151 FHQPNLRTFTGVRDYTIMMLMLETGIRINELVGLSVKDIRWEDSLLVIRNAKSYRERQVP 210

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRY-----IRQLRRYLG 255
           +   ++  + +Y  +  + +  N    LF  + G  L   G+ QR      + Q++    
Sbjct: 211 IQKDMKSQLKKYIAIRGY-VESN---ALFVTVDGTRLTRRGIQQRISIYGNMAQIK---- 262

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             +  + HT RH+FA   +  G ++  +Q+ILGH  +   + Y N+
Sbjct: 263 -DVRCSPHTFRHTFAKLSVQQGANIFELQAILGHTNMEIVKTYVNL 307


>gi|89147648|gb|ABD62683.1| integrase [uncultured bacterium]
          Length = 163

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 37/59 (62%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            Q  ++   R   +    + HT RHSFATHLL NG D+R++Q +LGH  + TT IYT+V
Sbjct: 104 LQSAVKAAVRAAEIAKPASCHTFRHSFATHLLENGYDIRTVQELLGHTNVKTTMIYTHV 162


>gi|149916292|ref|ZP_01904812.1| Integrase [Roseobacter sp. AzwK-3b]
 gi|149809746|gb|EDM69598.1| Integrase [Roseobacter sp. AzwK-3b]
          Length = 157

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 74/152 (48%), Gaps = 14/152 (9%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLR-------IQGKGDKIRIVPLLPSVRKAIL 211
           +L+  Y  GLR  E  +L   ++ DDQ  +R        Q KG + R V L   +R+A+ 
Sbjct: 1   MLFSFY-AGLRAKEIAALKRGDVFDDQGAVRDQFILSAAQSKGGRTRTVYLNQRLRRALA 59

Query: 212 EYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           +Y       LNL + + PLF   +G   +     +    + R +GL    ++H+ R ++ 
Sbjct: 60  DYASA----LNLSDPKRPLFESQKGGHFSANTMCQLFLDIYRAVGLR-DASSHSGRRTYI 114

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           T L + G  +R +  + GH  +STTQ Y +VN
Sbjct: 115 TRLANKGVGVRLLAELAGHSHISTTQRYIDVN 146


>gi|13474966|ref|NP_106529.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|13474967|ref|NP_106605.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025715|dbj|BAB52315.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025792|dbj|BAB52391.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 332

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 122/292 (41%), Gaps = 28/292 (9%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEE---KITIQTIRQLSYTEIRAFISK-RRTQKI 83
           +R  S  TL SY  DT  F + LA+   +     +  T+  L    + AF+    R +  
Sbjct: 22  QRQASPHTLASYR-DT--FCLLLAYAQRQLRKGASHVTLPDLDTAFLGAFLDHLERDRDN 78

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV-- 141
             RS    L+ I SF +Y+       E + L  R L    ++P     ++ +  + ++  
Sbjct: 79  SARSRNVRLAAIHSFFRYVALH--APEHSALAQRVL----AIPSKRYVRRPVAFLTSIEV 132

Query: 142 --LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIR 198
             LL       WI  R+ A+L L    GLR +E + L  ++I +   + ++ QGKG K+R
Sbjct: 133 AALLAAPDLGSWIGRRDRALLLLAVQTGLRAAEIVGLRCEDIVLGPAAYVQCQGKGRKLR 192

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ----RYIRQLRRYL 254
             PL    RK  +        +       P F  I G  L+    Q    +++   RR  
Sbjct: 193 NTPL----RKDTVTVLRAWLAERRGRSADPAFPTISGTSLSHDALQYLLNKHLAVARRDC 248

Query: 255 GLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
               S   T H LRH+ A  LL +G D   I   LGH  + TT IY   + K
Sbjct: 249 PSLASKHVTPHVLRHTLAMDLLQHGVDRSVIALWLGHESVETTAIYLQADMK 300


>gi|294617320|ref|ZP_06696960.1| transposase A [Enterococcus faecium E1679]
 gi|291596429|gb|EFF27682.1| transposase A [Enterococcus faecium E1679]
          Length = 361

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 99/217 (45%), Gaps = 37/217 (17%)

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
            K FL ++ K +   + N+L +R  KK     R L  ++   ++D    HT         
Sbjct: 139 FKGFLHHVNKGRY--QKNVLKLRVKKKQ---IRTLRSEEVKQIIDAC--HTK-------- 183

Query: 155 RNSAILYLLYGCGLRISEALSL--------------TPQNIMDDQSTLRIQGKGDKIRIV 200
           R+  IL L+Y  GLRI E LSL              TP+++  +++ ++++ K   I + 
Sbjct: 184 RDKLILMLMYEGGLRIGEVLSLRLEDIVTWDNQIHLTPRDVNVNEAYIKLR-KERTIHVS 242

Query: 201 PLLPSVRKA--ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
             L S+     I EY +    D    + + L  G  GKPL        +R++ +  G+  
Sbjct: 243 KELMSLYTDYLIYEYSEELEHDY---VFISLKEGYFGKPLKYQSVLDLVRRIVKRTGIEF 299

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             T+H LRH+ AT L+  G D+  +Q  LGH  + TT
Sbjct: 300 --TSHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTT 334


>gi|170690856|ref|ZP_02882022.1| integrase domain protein SAM domain protein [Burkholderia graminis
           C4D1M]
 gi|170144105|gb|EDT12267.1| integrase domain protein SAM domain protein [Burkholderia graminis
           C4D1M]
          Length = 261

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 86/192 (44%), Gaps = 8/192 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           R+  L+++  ER  S  T  SY       L F A      I   T++ LS T +R F+  
Sbjct: 12  RRFMLEHMVAERNFSPNTQASYRDTLTLLLPFAAKLGGFAIDRMTVKDLSPTIVRQFLDH 71

Query: 78  RRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQA 134
               +  G  +    LS + S  +++        S    +R++  KK+        EK  
Sbjct: 72  VECDRHCGGATRNLRLSALHSLARFIGMHSPVHLSWCSEVRSIPFKKTARTLIGYLEKSE 131

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGK 193
           +    + LL        I+AR+ A+L  LY  G R  EA  LT   + + + ST+RI GK
Sbjct: 132 M----DALLAAPDRRTAIEARDYALLLFLYNSGARADEAAKLTIGRLQLTEPSTVRILGK 187

Query: 194 GDKIRIVPLLPS 205
           G+K+R+ PL P+
Sbjct: 188 GNKMRVCPLWPT 199


>gi|172034831|ref|YP_001798608.1| integrase/recombinase [Cyanothece sp. ATCC 51142]
 gi|171701595|gb|ACB54574.1| probable integrase/recombinase [Cyanothece sp. ATCC 51142]
          Length = 290

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 99/231 (42%), Gaps = 22/231 (9%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S+   +S IKS   Y  K         LN+    K+ S   AL+E+         L+  +
Sbjct: 78  SIALKISIIKSLFSYAWKIGYLP----LNIAKAVKAPSSVNALHERILEQPEVKALIEAA 133

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----MDDQSTLRIQGKGDKIRIVPL 202
            E      R+  IL L+Y  GLR +EALS+  +++       Q+T  I GKG K+R V +
Sbjct: 134 KE-----GRDRTILTLIYATGLRATEALSINWRDLRPRKQGGQAT--ITGKGGKVRTVLI 186

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
             ++ K + +     P          +F    G  L+     R +++     G+   T+ 
Sbjct: 187 SDNLWKELKK----LPRSQKTE---AVFTTRFGNRLDRHQLHRIVKKTAEKAGINEHTST 239

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           H LRH+ A H L NG D+  +   LGH  L+ T  Y +     G    ++I
Sbjct: 240 HWLRHAHACHSLENGCDIDVLMRSLGHSSLTITSKYLHARPNEGSSQFIDI 290


>gi|229010701|ref|ZP_04167898.1| Tn554-related, transposase A [Bacillus mycoides DSM 2048]
 gi|228750375|gb|EEM00204.1| Tn554-related, transposase A [Bacillus mycoides DSM 2048]
          Length = 350

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 113/235 (48%), Gaps = 35/235 (14%)

Query: 80  TQKIGDRSLKRSLSG----IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +Q +G++ +++  +G     KSFL ++ K K    S+I N+  +K+     + L ++Q  
Sbjct: 99  SQDMGEKLMRQFFTGGRTRYKSFLHHVNKDK----SSIRNVLKVKEPRKRIQILTKEQ-- 152

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQG 192
             V   L+ T+      + R++ ++ LL+  GLRI EALSL  ++   D      +R+  
Sbjct: 153 --VQQTLVATT------NIRDTFLIQLLFETGLRIGEALSLFLEDFQFDYGKGHRIRLTD 204

Query: 193 KGD-----KIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGI-RGKPLNP 240
           +G+     K++       V +A+++ YD      +   +++ N      RG  +GKP+  
Sbjct: 205 RGELENGAKLKTGEREIFVSQALMDLYDDYLYEVIDELNIDTNFVFVKLRGENKGKPMTY 264

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
              +   ++LR+     ++   H  RH+ AT       D++ +Q  LGH ++ TT
Sbjct: 265 SDVEAMFKRLRQ--KTRINVHPHLFRHTHATMYYQETKDIKQVQERLGHSQIQTT 317


>gi|218905655|ref|YP_002453489.1| transposase A [Bacillus cereus AH820]
 gi|218538676|gb|ACK91074.1| transposase A [Bacillus cereus AH820]
          Length = 361

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 38/218 (17%)

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
            K FL ++ K K + + NIL +R  KK   + + L  +Q   ++D    HT         
Sbjct: 140 FKGFLYHISKGK-SYQKNILKLRVKKK---IVQVLEHEQVKAIIDAC--HTK-------- 185

Query: 155 RNSAILYLLYGCGLRISEALSL--------------TPQNIMDDQSTLRIQGKGDKIRIV 200
           R+  ++ L+Y  GLR+ E LSL              TP++  ++ + ++++ K  KI + 
Sbjct: 186 RDKLLIMLMYEGGLRVGEVLSLRIEDISTWDNQINITPRDHNENGAYIKLR-KERKIDVS 244

Query: 201 PLLPSVRKAIL--EYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
             L ++    L  EY +    D + +N++   F    GKPL        IR+L +  G+ 
Sbjct: 245 KELMALYTDYLVHEYGEDLEHDYIFINLKESYF----GKPLKYQSVLDLIRRLVKRTGIT 300

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
              TAH LRH+ AT L+ +G D   +Q  LGH  + TT
Sbjct: 301 F--TAHMLRHTHATELIRSGWDAAYVQKRLGHAHVQTT 336


>gi|94442268|dbj|BAE93633.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|228969782|ref|ZP_04130546.1| Integrase/recombinase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228789934|gb|EEM37752.1| Integrase/recombinase [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 304

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 61/290 (21%), Positives = 134/290 (46%), Gaps = 23/290 (7%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           +N  I++G S+ T+ SY  D + F   +    +  +    I++ +    R  ++ ++ + 
Sbjct: 6   RNYLIDKGKSRNTVISYINDLQVFFQEMGVNPDSYVISNDIKKWT----RDMLNPKKGKA 61

Query: 83  IGDRSLKRSLSGIKSFLKYLKKR---KITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           +   ++ R L+ ++S+  + ++    ++   ++I +++ + + +     L EK+   L++
Sbjct: 62  LSVSTINRRLNTLRSYFSWAERENYIRVNPMTDIKDLKMVDEEHEKIMWLTEKEFEELLE 121

Query: 140 NVLLHTSHETKWIDA-----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
            +  +   +T+ ++A     R+  I+Y+L   GLR+ E  +L   +I  D   +R+ GKG
Sbjct: 122 RMRKYPI-KTRGVNAEEKYRRDRVIIYILTYAGLRVEELSNLKITDIDLDVKKIRVVGKG 180

Query: 195 DKIRIVPLLPSVRKAILEYYDL---CPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQ 249
           +K+R +P+   +   ILE+         +  +    P  L+    GK    G+       
Sbjct: 181 NKVRTIPMSNFLYNEILEWLQFRSKVSNEKEIVSHSPFLLYSQRSGKFSIRGIQN----M 236

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLSTTQIY 298
           +  Y       T H  RH+F   +L +   D+  ++ + GH  +STT  Y
Sbjct: 237 IENYSTPDKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSHISTTTRY 286


>gi|228943482|ref|ZP_04105925.1| Integrase-recombinase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228976122|ref|ZP_04136621.1| Integrase-recombinase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228783597|gb|EEM31677.1| Integrase-recombinase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228816192|gb|EEM62374.1| Integrase-recombinase [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 390

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 66/153 (43%), Gaps = 10/153 (6%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           N  IL  L   G RI E  +   +++  D +  L++ GKGDK+R + +   + + I E  
Sbjct: 218 NYTILLALASTGARIQELCNARVKDLHYDGKYWLKVTGKGDKVRELFISEHLYQCICEMR 277

Query: 215 DL--CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266
               C   L    + PLF   RG   N       +  + +   L          TAHT R
Sbjct: 278 RRRGCQTVLEKGDESPLFINQRGNTYNSKTLSNQVTDMVKKTNLEFLLYRENPVTAHTFR 337

Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
           H+FA   +  G  DL  +   LGH  + TT+IY
Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370


>gi|188526777|gb|ACD62270.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 39/60 (65%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            FQR  ++     G+    T HTLRHSFAT LL +  D+R++Q +LGH  +STT IYT+V
Sbjct: 99  TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSSYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|217968816|ref|YP_002354050.1| integrase [Thauera sp. MZ1T]
 gi|217506143|gb|ACK53154.1| integrase family protein [Thauera sp. MZ1T]
          Length = 411

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 122/282 (43%), Gaps = 15/282 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           LE ER L+  T+  Y    R+FL  +    E  +       +   ++  F+ +   +   
Sbjct: 125 LERERRLAPATVFHYLEFARRFLAQMVPKGEASLA-----HVQAADVVDFVQREAARLHH 179

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITT---ESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +  K   + ++SFL+Y + R +     + ++  + N   + SLPRAL+   A+ L    
Sbjct: 180 AKRAKLMTTAVRSFLQYARYRGLIEADLKPSVPAVANWSMA-SLPRALS---AVEL--QR 233

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           LL +      +  RN AIL LL   GLR  E  +LT  +I    + L IQG G     +P
Sbjct: 234 LLASCERGTAVGRRNWAILLLLARLGLRAGEVTALTLDDIDWAAAELCIQGAGVSANRLP 293

Query: 202 LLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           L   V  A+ +Y  D  P   +  + + +    RG   +  V     R L R    P   
Sbjct: 294 LPHEVGAALADYLRDGRPACTSRRVFVRMRAPTRGFKSSSAVSTVVRRALARAGLDPAHH 353

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            AH LRH+ AT +L  G  L  I  +L H    TT IY  V+
Sbjct: 354 GAHLLRHTVATQMLRQGASLAEIGELLRHRSPQTTMIYAKVD 395


>gi|157369299|ref|YP_001477288.1| integrase family protein [Serratia proteamaculans 568]
 gi|157321063|gb|ABV40160.1| integrase family protein [Serratia proteamaculans 568]
          Length = 197

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 1/150 (0%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE-Y 213
           R++ ++++ +  G R+SE   L   ++  D   L I    + +     L +  K +L+ +
Sbjct: 31  RDTCLIWMGFIHGCRVSELTGLRLADLDMDDGCLYISRLKNGLSTTHPLETTEKRLLQRW 90

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            +   F  NL+ Q  LF   +G  L+     R +R+  R  GL +    H LRH+    L
Sbjct: 91  LEKRQFCRNLDDQDWLFLSQKGYRLSRQRIFRMLREYGRRAGLEVEAHPHMLRHACGYAL 150

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             NG D R IQ  LGH  +  T +YT  N+
Sbjct: 151 ADNGADTRVIQDYLGHRNIQHTVLYTAANA 180


>gi|260467249|ref|ZP_05813424.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
 gi|259028939|gb|EEW30240.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
          Length = 160

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 41/67 (61%)

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           P++     R +++     G+    + HTLRHSFATHLL    D+R IQ +LGH +L TT 
Sbjct: 70  PISSRQLHRAVQEAAEVAGIRKRVSPHTLRHSFATHLLEQDVDIRVIQVLLGHSKLETTA 129

Query: 297 IYTNVNS 303
           +YT V++
Sbjct: 130 LYTKVST 136


>gi|323486907|ref|ZP_08092223.1| hypothetical protein HMPREF9474_03974 [Clostridium symbiosum
           WAL-14163]
 gi|323691955|ref|ZP_08106204.1| integrase [Clostridium symbiosum WAL-14673]
 gi|323399770|gb|EGA92152.1| hypothetical protein HMPREF9474_03974 [Clostridium symbiosum
           WAL-14163]
 gi|323503964|gb|EGB19777.1| integrase [Clostridium symbiosum WAL-14673]
          Length = 350

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 115/271 (42%), Gaps = 27/271 (9%)

Query: 41  CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD-----RSLKRSLSGI 95
           C+ R F +           +  I+ + + E   F+    T+K  D     R + R ++ +
Sbjct: 69  CEMRDFSL---------TVLDEIQVMDFEEYMEFLKCHSTEKREDLVNTERGIMRKIASL 119

Query: 96  KSFLKYL--KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
           KSF  Y    +R     + ++ +  L +   +   ++E  +L          + + K   
Sbjct: 120 KSFYNYFYRHERIKNNPAALVQLPKLHEKEIIRLEVDEVASLLDQVEAGAQLTEKQKAFH 179

Query: 154 A----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           A    R+ A++ LL G G+R+SE + L   ++  +   +RI  KG K  IV     V  A
Sbjct: 180 AKTKIRDLALMTLLLGTGIRVSECVGLNINDVDFNTGGIRIHRKGGKEVIVYFGAEVEDA 239

Query: 210 ILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           + +Y      + P       +  LF  ++ K LN    +  +++  + +      T H L
Sbjct: 240 LADYMAERKHITP---EPGHEDALFLSLQKKRLNVRSVENLVKKYAKIVTPLKKITPHKL 296

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           R ++ T+L    GD+  +  +LGH  ++TT+
Sbjct: 297 RSTYGTNLYRETGDIYLVADVLGHEDVNTTK 327


>gi|126657051|ref|ZP_01728222.1| phage integrase [Cyanothece sp. CCY0110]
 gi|126621594|gb|EAZ92304.1| phage integrase [Cyanothece sp. CCY0110]
          Length = 359

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 109/258 (42%), Gaps = 52/258 (20%)

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRK----------ITTESNI---------------LNM 116
           K  +RS+  +L+ + +F +Y    K          ITT  N                  +
Sbjct: 100 KRSERSINLALTAVTTFYEYHDAHKNIDPKKFDRLITTRGNTRRGLLDGISKSKPTRQKL 159

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             LK+    P  L ++Q  TLV+N      H       R+  ++ LL G G+R+ E L L
Sbjct: 160 VKLKEPKKFPGCLTDEQVETLVNNC-----HR-----LRDKFLILLLNGTGIRVGELLGL 209

Query: 177 TPQNIMDDQSTL----------RIQGKGDKIRIVPLLPSVRKAILEY--YDLCPFDLNLN 224
             +++ D                 + KG + R +P++P + +   +Y  Y+    + N  
Sbjct: 210 QHEDVGDGSDYFIHVRKRRHGNEARAKGQE-RTIPVIPELLQMYNDYLIYEYPEVESNY- 267

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
           + + ++ G  G P+   V      +L +  G+ +    H  RH++AT LL  G  +  ++
Sbjct: 268 VFVNIWEGAIGMPMKAPVINTMFTRLSKKTGIKVY--PHLFRHTYATRLLKAGMRVDRVK 325

Query: 285 SILGHFRLSTT-QIYTNV 301
            +LGH  + TT  IY+++
Sbjct: 326 YLLGHASVQTTLDIYSHI 343


>gi|240172885|ref|ZP_04751544.1| phage integrase family protein [Mycobacterium kansasii ATCC 12478]
          Length = 372

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 117/294 (39%), Gaps = 49/294 (16%)

Query: 42  DTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY 101
           D  QFL  L    E+ I + T+R  S T I  F S     + G             ++ +
Sbjct: 74  DVDQFLADLR-SQEKPIALSTLRSYSNT-ISMFCSYVSDGRYG-------------WVAF 118

Query: 102 LKKRKITTESNIL---NMRNLKKSNSLP---RALNEKQALTLVDNV--LLHTSHET---K 150
            +K+     S I    N       +++P   RA  + +   L D V   +  +H T   +
Sbjct: 119 CEKQFGDVPSQICFEWNTPQHTTDDAVPPRRRAFTKAELQHLFDAVDDFVDEAHRTGSKR 178

Query: 151 WIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQS----------TLR----IQGKGD 195
           W+ A R+S    + Y  GLR  E + L   +   +            T+R     +G G 
Sbjct: 179 WLTALRDSTAFKIGYAYGLRRRELVMLDLTDFGPNPHVPTYGNYGALTVRWAKGTKGSGP 238

Query: 196 KIRIVPLLPSVRKAI--LEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + R V   P    A+  L+Y+  C     L    +    L+   RG  L      R    
Sbjct: 239 RRRTVLTSPEFAWAVELLQYW--CSEGRQLFSTADRSPALWPSERGGRLTLNALGRSFTA 296

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            R+  GLP   + H LRHSF THLL  G D   +Q  LGH   STT +YT+V S
Sbjct: 297 FRQRAGLPPELSLHALRHSFTTHLLEAGYDPLFVQQQLGHSFASTTSLYTSVTS 350


>gi|301299655|ref|ZP_07205912.1| conserved hypothetical protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852749|gb|EFK80376.1| conserved hypothetical protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 75

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 37/55 (67%)

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           R L   +GL +  T H  RH+FAT LL +G D+R IQ ILGH  ++ TQIYT+V+
Sbjct: 3   RNLPYKMGLEIKITPHMFRHTFATMLLESGVDIRYIQQILGHSSIAVTQIYTHVS 57


>gi|319744173|gb|EFV96543.1| phage integrase family integrase/recombinase [Streptococcus
           agalactiae ATCC 13813]
          Length = 328

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 113/250 (45%), Gaps = 27/250 (10%)

Query: 63  IRQLSYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
           IRQ+S +++R +++    +R++ K+   +++R  S   SF  +L+      +S +  +  
Sbjct: 89  IRQISTSDLRTYLANYQKERQSSKVTIDNMRRIFS---SFFSWLEDEDYILKSPVRRIHK 145

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           +K    +   L+++    L D             + R+ A++ LL   G+R+ E + L  
Sbjct: 146 IKTDKVIKETLSDESLELLRDTC----------DNIRDLAMIDLLASTGMRVGELVRLNR 195

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD---LNLNIQLPLFRGIRG 235
           ++I   +    + GKG+  RIV      +  ++ Y D    D   L +++  P  R + G
Sbjct: 196 EDINFHERECLVFGKGNSERIVYFDARTKIHLINYLDSRKDDSSALFVSLAYPYDRLMIG 255

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                GV  R +R++ +   L      H  R + AT  +  G  +  +Q +LGH ++ TT
Sbjct: 256 -----GVETR-LREIGKRANLQ-KVHPHKFRRTLATRAIDKGMPIEQVQHLLGHVKIDTT 308

Query: 296 QIYTNVNSKN 305
             Y  VN  N
Sbjct: 309 MHYAMVNQAN 318


>gi|223369820|gb|ACM88779.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R   +    +QR I++      +    T+HT RHSFAT LL +G D+R++Q +LGH  +
Sbjct: 94  VRRHHMYEQTYQRAIQRAATEAKITKRVTSHTFRHSFATQLLESGYDIRTVQELLGHSDV 153

Query: 293 STTQIYTNV 301
           STT IYT+V
Sbjct: 154 STTMIYTHV 162


>gi|308183658|ref|YP_003927785.1| integrase/recombinase (xerD) [Helicobacter pylori PeCan4]
 gi|308065843|gb|ADO07735.1| integrase/recombinase (xerD) [Helicobacter pylori PeCan4]
          Length = 355

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 122/267 (45%), Gaps = 29/267 (10%)

Query: 48  IFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKR 105
           +FL F Y  + + +++ R LS  ++  F+ +   Q     S+ + +  ++ F  YL +K+
Sbjct: 77  LFLFFEYFRDNLKLRSFRMLSEEQVINFLFEL-AQNRKPSSMAKYVMYLRQFFDYLDRKK 135

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
               +  + N+   K   SLPR LN K   + +  +L +    T   + RN  +L ++  
Sbjct: 136 HYNFDFALKNLAFAKTKESLPRHLNYKDLKSFLKTLLEYKP--TTSFEKRNKCVLLIVML 193

Query: 166 CGLRISEALSLTPQNIMDDQS--TLRIQGKGDK-----IRIVPLLPSVRKAILEYYDLCP 218
            GLR  E L++  ++I  ++   ++ IQGKG K     I+   L PS+   + + Y L  
Sbjct: 194 GGLRKCEVLNIELKHIQVEEQNYSILIQGKGRKERKAYIKKSLLEPSLNAWLSDDYRLKY 253

Query: 219 FDLNLNIQLPLFRGIRGKPLN--------PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           F+        LF+  + K  N        P +F+  + Q++ Y      T  H  RHSFA
Sbjct: 254 FN-----GAYLFKKDKQKSQNSLTLYNFIPLIFK--LAQIKHYK--QYGTGLHLFRHSFA 304

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQI 297
           T +     DL      LGH  L +T+I
Sbjct: 305 TLIYQETQDLVLTSRALGHSSLLSTKI 331


>gi|229191399|ref|ZP_04318384.1| Integrase-recombinase [Bacillus cereus ATCC 10876]
 gi|228592081|gb|EEK49915.1| Integrase-recombinase [Bacillus cereus ATCC 10876]
          Length = 390

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 66/153 (43%), Gaps = 10/153 (6%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           N  IL  L   G RI E  +   +++  D +  L++ GKGDK+R + +   + + I E  
Sbjct: 218 NYTILLALASTGARIQELCTARVKDLHYDGKYWLKVTGKGDKVRELFISEHLYQCICEMR 277

Query: 215 DL--CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266
               C   L    + PLF   RG   N       +  + +   L          TAHT R
Sbjct: 278 RRRGCQTVLEKGDESPLFINQRGNTYNSKTLSNQVTDMIKKTNLEFLLYRENPVTAHTFR 337

Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
           H+FA   +  G  DL  +   LGH  + TT+IY
Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370


>gi|94442294|dbj|BAE93646.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|171057459|ref|YP_001789808.1| integrase family protein [Leptothrix cholodnii SP-6]
 gi|170774904|gb|ACB33043.1| integrase family protein [Leptothrix cholodnii SP-6]
          Length = 417

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 13/187 (6%)

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           +SLP+ L +++   LV ++    ++  + +  R  AI+      GLR  E   L+  +I 
Sbjct: 227 SSLPKKLTDEEVAQLVGSL----NNPCRAMR-RACAIVRCALDLGLRSIEVAQLSLDDID 281

Query: 183 DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGI--RGKPL 238
               T+ +   KG ++ I+PL  +  +AI  Y +L  P   N  I     R +  R  P+
Sbjct: 282 WHAGTITLRHTKGRRVDILPLPVATGEAIARYLELERPKTTNRAI---FVRNVAPRDAPI 338

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              + +  IRQ     GLP  T +H LRH+ A  LL++G  L+ +  +L H  L+TT IY
Sbjct: 339 GADLIRITIRQAYARAGLPY-TRSHLLRHTMANRLLASGSTLKEVADVLRHRSLNTTMIY 397

Query: 299 TNVNSKN 305
             ++S++
Sbjct: 398 AKLDSRS 404


>gi|227529436|ref|ZP_03959485.1| phage integrase/recombinase [Lactobacillus vaginalis ATCC 49540]
 gi|227350646|gb|EEJ40937.1| phage integrase/recombinase [Lactobacillus vaginalis ATCC 49540]
          Length = 322

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 129/286 (45%), Gaps = 23/286 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L   ++E G S+ T+  Y+   +    +L  + + KIT + +R      +  +   R 
Sbjct: 50  DYLAAKQVE-GCSEKTINYYQVTLKMMFSYLGKHVQ-KITTEDLRDY----LGNYQQSRN 103

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           + ++   +++R  S   SF  +L+   +  +S +  +  +K S  +    +++    L D
Sbjct: 104 SSRVTIDNIRRIFS---SFFSWLEDEDVIIKSPVRRIHKVKSSAKVKDTYSDEDLERLRD 160

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
               H + E      R+ A++ +L   G+RI E ++L   +I  D+    + GKG+K RI
Sbjct: 161 ----HCNSE------RDVAMIDILASTGMRIGELVNLNQNDINFDERECVVLGKGNKQRI 210

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           V    +  K  L+ Y     D N  + + L    +   +N G+  R ++ L +  G+   
Sbjct: 211 V-YFDARSKIHLQNYLAKRKDANSALFVSLHAPHQRMSIN-GIENR-LKSLGKKAGIA-K 266

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
              H  R + AT+ +  G  +  +Q +LGH R+ TT  Y  V   N
Sbjct: 267 VYPHKFRRTLATNAIDKGMPIEQVQKLLGHERIDTTLHYAMVKQSN 312


>gi|94442284|dbj|BAE93641.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|94442300|dbj|BAE93649.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|94442282|dbj|BAE93640.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           PS  K+ +  Y    F  N     P    ++   ++    Q+ I++      +     +H
Sbjct: 67  PSAAKSWMWQY---AFPSNQRCFAPDLGTMKRHHVHQTSVQKAIKRAVTRCNINKRVGSH 123

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 124 AFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|30908740|gb|AAP37602.1| IntI [uncultured bacterium]
          Length = 161

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 38/57 (66%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R ++Q      +    + HTLRHSFATHLL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 105 RGVKQAAHAARIDKHVSCHTLRHSFATHLLEDGYDIRTVQELLGHSSVETTMIYTHV 161


>gi|94442278|dbj|BAE93638.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|189459809|ref|ZP_03008594.1| hypothetical protein BACCOP_00438 [Bacteroides coprocola DSM 17136]
 gi|189433419|gb|EDV02404.1| hypothetical protein BACCOP_00438 [Bacteroides coprocola DSM 17136]
          Length = 413

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 74/162 (45%), Gaps = 22/162 (13%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQS----------TLRIQGKGDKIRIVPLLPSVRKA 209
            L+ C  GL  ++  +L P+++  D +           L  + K   I  VPLLP V  A
Sbjct: 252 FLFACFTGLAFADVSTLRPEHLEQDNNGDWWIRKGRVKLERRRKSSSIANVPLLP-VPLA 310

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           IL+ Y+  P  L     LP+    +           Y++++  + G+  + T H  RH+F
Sbjct: 311 ILKKYESHPICLKQGTCLPVVCNQKA--------NSYLKEIADFCGIKKNLTTHAARHTF 362

Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           AT + L+N   L+ + ++LGH     TQ Y  V  +N  D M
Sbjct: 363 ATTVTLANNVPLQEVSAMLGHASTRMTQHYARVMDRNLKDNM 404


>gi|293402584|ref|ZP_06646711.1| integrase/recombinase, phage integrase family [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291303976|gb|EFE45238.1| integrase/recombinase, phage integrase family [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 327

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 113/252 (44%), Gaps = 27/252 (10%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDR----SLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           + +++++  +IR+++++ ++ K   R    +++R LS   SF  +L+      +S +  +
Sbjct: 86  KNVKEITTDDIRSYLTEYQSNKNSSRVTIDNIRRILS---SFFSWLEDEDYILKSPVRRI 142

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             +K  +++    +++    + DN            + R+ A++ LL   G+RI E + L
Sbjct: 143 HKVKTVSNIKETYSDETLELIRDNC----------NEIRDLALIDLLASTGMRIGELVLL 192

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
              +I   +    + GKGDK R+V      +  +  Y D    D N      LF  ++  
Sbjct: 193 NRNDINFYERECVVFGKGDKERVVYFDARAKIHLKNYLDSRTDDNN-----ALFVTLKA- 246

Query: 237 PLNP---GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           P N    G  +  +R L + LGL      H  R + AT  +  G  +  +Q +LGH R+ 
Sbjct: 247 PFNRITIGGIETRLRTLGKQLGLS-KVHPHKFRRTLATMAIDKGMPIEQLQQLLGHRRID 305

Query: 294 TTQIYTNVNSKN 305
           TT  Y  V   N
Sbjct: 306 TTLQYAMVKQSN 317


>gi|94442292|dbj|BAE93645.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|152975083|ref|YP_001374600.1| phage integrase family protein [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152023835|gb|ABS21605.1| phage integrase family protein [Bacillus cytotoxicus NVH 391-98]
          Length = 304

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 129/305 (42%), Gaps = 18/305 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFL---AFYTEEKITIQTIRQLSYTEIRAFI 75
           Q +L + E+ R LSK TL+SY+   ++F  F      +  +K+T +  ++         I
Sbjct: 8   QEFLDDREL-RNLSKHTLKSYKGILKRFESFCVNKGIFDTDKVTSKVAKEF-------LI 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
             +   K    ++      +K + KYL++  I  E N        K +++   L ++Q  
Sbjct: 60  YCKHELKNSISTINEKNRTLKVYFKYLEEEGIV-EENPFKKIKFSKEDTITDVLTDEQVK 118

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +++++        T +   RN  ++ LL   GLR  E ++L   +I     T+   GK  
Sbjct: 119 SVLEHFDRGHYKGTNFALMRNRMVIVLLISTGLRREELVNLKWSDIDMRNRTIMTYGKKR 178

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYL 254
            +  +P    ++K + EY     F      ++  +F     + L         ++L++ L
Sbjct: 179 TVATIPYTRKLQKELAEYKTFLEFYFEEEKEVVYVFPDKWNRQLTTEAISTLFKRLKKNL 238

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            +    T H  R  FA+  L  G D  ++Q ++ H  L  T+ Y  +     G  + ++ 
Sbjct: 239 NME-GLTCHAFRRYFASKCLKMGMDSLNLQKLMRHETLQMTERYVKL----YGHALHDVN 293

Query: 315 DQTHP 319
           D+ +P
Sbjct: 294 DKYNP 298


>gi|228911955|ref|ZP_04075682.1| Integrase-recombinase [Bacillus thuringiensis IBL 200]
 gi|228847676|gb|EEM92603.1| Integrase-recombinase [Bacillus thuringiensis IBL 200]
          Length = 390

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 66/153 (43%), Gaps = 10/153 (6%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           N  IL  L   G RI E  +   +++  D +  L++ GKGDK+R + +   + + I E  
Sbjct: 218 NYTILLALASTGARIQELCTARVKDLHYDGKYWLKVTGKGDKVRELFISEHLYQCICEMR 277

Query: 215 DL--CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266
               C   L    + PLF   RG   N       +  + +   L          TAHT R
Sbjct: 278 RRRGCQTVLEKRDESPLFINQRGNAYNSKTLSNQVTDMIKKTNLEFLLYRENPVTAHTFR 337

Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
           H+FA   +  G  DL  +   LGH  + TT+IY
Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370


>gi|227515184|ref|ZP_03945233.1| integrase XerD [Lactobacillus fermentum ATCC 14931]
 gi|227086516|gb|EEI21828.1| integrase XerD [Lactobacillus fermentum ATCC 14931]
          Length = 292

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 122/281 (43%), Gaps = 19/281 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q WL     ++G +KLT+ SY  D R    +L   T   +T    +Q+    + A++   
Sbjct: 16  QEWL----TKKGGAKLTIASYLTDLRDTAAYL---TSRGVT--NWQQVDRATLTAYLQSL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     +++R +S ++ F  YL+         +  ++  +     P  L  ++A  L 
Sbjct: 67  NDKGRRTTTIQRRISSLRRFYAYLQVTGQVNHDPVALLKAKQTPRLAPVGLTPQEADLLP 126

Query: 139 DNVLLHTSHETKWID-ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           D+V        K +   RN A++ LL   G R +E   L   + +D +  +   G+  + 
Sbjct: 127 DHV------PGKGVARERNRALVALLVATGARANELRDLQTGD-LDLELGVVYLGQSSR- 178

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VPL     +  L  Y     D +   +  +F   RG+PL+       +    +   + 
Sbjct: 179 RLVPLNEQA-QTYLTTYLTARADQSATDEGYVFLNNRGQPLSRQSIWEIVNATGQRANIE 237

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            + T   +R  FA  LL++G DL  +Q ++GH  + TTQ+Y
Sbjct: 238 GAVTPQRVRDGFAYRLLAHGADLSLVQQLMGHQSILTTQVY 278


>gi|94442280|dbj|BAE93639.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|254513217|ref|ZP_05125282.1| tyrosine recombinase [Rhodobacteraceae bacterium KLH11]
 gi|221532221|gb|EEE35217.1| tyrosine recombinase [Rhodobacteraceae bacterium KLH11]
          Length = 146

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 4/86 (4%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G+   P    + +R       +  S + H  RHS AT +L NG D+R IQ +LGH +L T
Sbjct: 41  GEAFTPNRMTQLVRGHINAAEIGKSGSCHLFRHSCATLMLENGADIRYIQQLLGHAKLDT 100

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPS 320
           TQIYT V+ +     + +I+  THP+
Sbjct: 101 TQIYTQVSIRQ----LKQIHTLTHPA 122


>gi|94442256|dbj|BAE93627.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|60550182|gb|AAX24185.1| integrase [Xanthomonas campestris pv. campestris]
          Length = 327

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 39/182 (21%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD----- 215
           LLYG G+R+ E L L  +++   +  + ++ GKG K R VPL  S+R   ++  +     
Sbjct: 131 LLYGSGMRLLECLRLRIKDVDMVRCEIVVRDGKGGKDRRVPLPRSLRGESMQQRERALLL 190

Query: 216 --LCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYL----------------- 254
                 +    + LP  L R      + PG +Q      RR +                 
Sbjct: 191 HAADLAEGAGQVFLPHALARKYPSADVEPG-WQYLFPGARRSVDPRSGRVGLHHVSEEIR 249

Query: 255 -----------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
                      G+    T HTLRHSFATH    G D+R++Q +LGH  ++TTQIYT+V  
Sbjct: 250 QRAVHAARRRAGIDKPATCHTLRHSFATHPPEAGHDIRTVQELLGHKDVATTQIYTHVLG 309

Query: 304 KN 305
           + 
Sbjct: 310 RG 311


>gi|94442266|dbj|BAE93632.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|327404928|ref|YP_004345766.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327320436|gb|AEA44928.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 420

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 10/129 (7%)

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPLLP +   IL  Y    + L  N  LP+    R        +  Y++++    G+   
Sbjct: 296 VPLLP-IPLEILSKYQDHEYCLKYNKLLPVNSNQR--------YNSYLKEIADLCGIKKK 346

Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
            T+H  RH+FAT + L+NG  + ++ ++LGH  + TTQIY  V  +   D M+++     
Sbjct: 347 LTSHIARHTFATTVTLANGVPIETVSAMLGHSNIRTTQIYAKVVEQKVSDDMLKLKSILQ 406

Query: 319 PSITQKDKK 327
              TQK+ K
Sbjct: 407 SKTTQKEMK 415


>gi|309802554|ref|ZP_07696658.1| site-specific recombinase, phage integrase family [Bifidobacterium
           dentium JCVIHMP022]
 gi|308220618|gb|EFO76926.1| site-specific recombinase, phage integrase family [Bifidobacterium
           dentium JCVIHMP022]
          Length = 273

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 41/212 (19%)

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
           SF ++++   +  +     + ++++  + PR   +K  L+ +              +   
Sbjct: 80  SFFRWIRAHDLRDDDPSQELPSVRRPQTHPRPCPDKVILSALSKA-----------NDEE 128

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
             +L L   CGLR SE  S++  ++MDD    +L ++G  DK R+VPL   +   I  ++
Sbjct: 129 QLMLRLGAECGLRRSEIASVSSTDVMDDLVGRSLIVRGLYDKQRLVPLPDDLADLITAHH 188

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-----TAHTLRHSF 269
           D                      L PG +Q ++     Y+G  LS      T H+LRH +
Sbjct: 189 DY---------------------LFPGRWQGHVEA--SYIGKHLSRLLDGWTTHSLRHRY 225

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           AT       DL  +  +LGH  + TTQ Y  +
Sbjct: 226 ATRAYEATHDLLLVSKLLGHASVETTQRYVAM 257


>gi|332300582|ref|YP_004442503.1| integrase family protein [Porphyromonas asaccharolytica DSM 20707]
 gi|332177645|gb|AEE13335.1| integrase family protein [Porphyromonas asaccharolytica DSM 20707]
          Length = 414

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 128/304 (42%), Gaps = 41/304 (13%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           ++ + LSK +LQ Y      F+ FL + Y  E I +         +   ++  +    + 
Sbjct: 123 QVGKSLSKDSLQKYTVVKTHFVRFLKSTYNREDIGLLEFTPSVVMDFELYLKTK--ANLA 180

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             + ++ L  +K+   + +KR I      L++    K ++ P           VD   L 
Sbjct: 181 HNTAQKKLKLLKTMTIFAQKRGIIMHDPFLDI----KFHTKP-----------VDRGFL- 224

Query: 145 TSHETKWIDARNSAIL--------YLLYGC--GLRISEALSLTPQNI--MDDQSTLRIQG 192
           T  E   I A++   L          ++ C  GL   +  +LTP++I  MDD+  +  + 
Sbjct: 225 TEDEVSLIVAKDLTRLPRLELVRDIFIFSCFTGLAYIDVRNLTPEDIVVMDDKEWVMSKR 284

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K   I    LL  + KAI+  Y+   +         LF  +  +  N      Y++++  
Sbjct: 285 KKTNIAFNVLLLDLPKAIISKYNHDTYR-----DGKLFPILSNQKTNS-----YLKEIAD 334

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+  + T H  RH+FAT  LS G  + S+  +LGH  + TTQIY  + +K     M +
Sbjct: 335 ICGIKKNLTFHLARHTFATLCLSKGVPMESVSKMLGHTNIRTTQIYARITNKKIEHDMEQ 394

Query: 313 IYDQ 316
             D+
Sbjct: 395 FADK 398


>gi|325690779|gb|EGD32780.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK115]
          Length = 328

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 113/251 (45%), Gaps = 27/251 (10%)

Query: 62  TIRQLSYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           T+R ++ +++R +++    +R++ K+   +++R  S   SF  +L+      +S +  +R
Sbjct: 88  TVRDITTSDLRTYLAHYQRERKSSKVTIDNMRRIFS---SFFSWLEDEDFILKSPVRRIR 144

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
            +K   ++    +++    L D             + R+ A++ LL   G+R+ E + L 
Sbjct: 145 KIKTDKTIKETFSDEGLELLRD----------ACDEIRDLAMIDLLASTGMRVGELVRLN 194

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD---LNLNIQLPLFRGIR 234
            ++I   +    + GKG+  RIV      +  ++ Y D    D   L +++  P  R + 
Sbjct: 195 REDINFYERECLVFGKGNSERIVYFDARTKIHLINYLDSRQDDNPALFVSLSSPHDRLLI 254

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G     GV  R +RQL     L      H  R + AT  +  G  +  +Q +LGH ++ T
Sbjct: 255 G-----GVETR-LRQLGEKADLN-KVHPHKFRRTLATRAIDKGMPIEQVQHLLGHVKIDT 307

Query: 295 TQIYTNVNSKN 305
           T  Y  VN  N
Sbjct: 308 TMHYAMVNQAN 318


>gi|89147476|gb|ABD62598.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 37/58 (63%)

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           Q+ ++   R  GL      HT RH FATHLL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 105 QKAVKVAARISGLVKKVGPHTFRHCFATHLLEDGYDIRTVQELLGHKDVKTTMIYTHV 162


>gi|28378636|ref|NP_785528.1| integrase, fragment [Lactobacillus plantarum WCFS1]
 gi|28271472|emb|CAD64377.1| integrase, fragment [Lactobacillus plantarum WCFS1]
          Length = 107

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           GKP+ P V + Y  +L R   L  S   H+LRH+ AT LL NG   + IQ  LGH R+ST
Sbjct: 22  GKPITPSVIKYYTGKLSR--ELDFSFNFHSLRHTHATMLLENGAKYKEIQQRLGHSRIST 79

Query: 295 T-QIYTNVNSK 304
           T  IY++V +K
Sbjct: 80  TLDIYSHVTNK 90


>gi|331697265|ref|YP_004333504.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326951954|gb|AEA25651.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
          Length = 573

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 8/150 (5%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQST--LRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +L   G+R SE L LT   ++   S   LR+  GK    R VPL P ++  I ++    P
Sbjct: 323 ILARTGMRRSEMLGLTIDAVVQIGSAYWLRVPVGKMHTDRYVPLHPQLKALIDDWLARRP 382

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
             L  ++   LF    G+P+N    +  +R      GL    T H LRH+ AT  ++ G 
Sbjct: 383 EGLRSDL---LFTD-HGRPVNASRIEAAVRNAADRAGLG-RVTPHQLRHTLATQAINRGM 437

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            L +I ++LGH  LS T++Y  + ++   D
Sbjct: 438 SLEAIAALLGHRSLSMTRVYARIANRTVAD 467


>gi|317058881|ref|ZP_07923366.1| tyrosine recombinase xerD-like protein [Fusobacterium sp. 3_1_5R]
 gi|313684557|gb|EFS21392.1| tyrosine recombinase xerD-like protein [Fusobacterium sp. 3_1_5R]
          Length = 266

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 119/265 (44%), Gaps = 30/265 (11%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E +  +Q ++ +LE++RGLS+ +L++ + D  QFL ++  Y + ++T+ T++   +    
Sbjct: 7   EFILWKQKYIHHLELQRGLSQNSLRAIQKDLEQFLNYMEEYQDGELTVLTLKSYFF---- 62

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
                   +K    +++R +S IK FL++LK+  I  E   L    ++K         E+
Sbjct: 63  -----HLQEKHASNTIQRKISSIKVFLRFLKEENIVQEDFSLYFTKVRK---------EE 108

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
             +   +  +          + R+ AI  LLY  G++  E LSLT   I   +  +    
Sbjct: 109 DTILFFEKDVWEQFRRAFENNLRDKAIFELLYSTGMKPKEFLSLTYLQIEWQKQEIYFFQ 168

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K +  R V      ++A+  Y   C        ++  F     +     +F++Y  ++  
Sbjct: 169 KKES-RTVFFSHRAKEALWNY---CEEKGRKEGRIWDF----SEKTLRNIFKKYREKIS- 219

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNG 277
             GL  + T ++ RH+FA  LL  G
Sbjct: 220 --GLE-NMTIYSFRHTFAITLLRAG 241


>gi|295087104|emb|CBK68627.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 470

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 121/283 (42%), Gaps = 36/283 (12%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS----KRRTQKIGD 85
           G S  TL  Y     + L+ L+           I  ++ ++IR ++S    + ++ K+  
Sbjct: 207 GCSDKTLAYYRNTIERLLVTLSM---------AICHITTSDIRTYLSDYQEEHQSSKVTI 257

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            +++R  S   SF  +L+      +S +  +  +K  + +   L+++Q   L D+     
Sbjct: 258 DNMRRIFS---SFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQLRDSC---- 310

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
                  + R+ AI+  L   G+R+ E + L  ++I   +    + GKG+K R+V     
Sbjct: 311 ------TNKRDLAIIDFLSSTGIRVGELVKLNREDIDFHERQCVVFGKGNKERVVYFNAR 364

Query: 206 VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            +  + +Y +    D   L +++  P  R      L     +  IR+L   L +P     
Sbjct: 365 TKLHLQQYLNGRTDDNPALFVSLHSPHTR------LTISGVEVRIRKLGHTLSMP-KVHP 417

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           H  R + AT  +  G  +  +Q +LGH R+ TT  Y  VN  N
Sbjct: 418 HKFRRTLATMAIDKGMPIEQVQRLLGHVRIDTTLHYAIVNQNN 460


>gi|317128840|ref|YP_004095122.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
 gi|315473788|gb|ADU30391.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
          Length = 324

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 118/281 (41%), Gaps = 30/281 (10%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GLSK TL  Y+   +  L FL    E  +    +    + E R ++       + D  LK
Sbjct: 45  GLSKQTLFDYDVHFKYLLDFL----ERDLMADEMTTEIFLEYRNYM-------LNDLGLK 93

Query: 90  RS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD-NVLL 143
            S     L  I++FL+Y      + E   ++    +K   +     E  AL+  +  +LL
Sbjct: 94  ASTVNIRLRTIRAFLRY------SYEEGWIDQPIHEKFKPVKAPQKEVDALSPREIKLLL 147

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI---RIV 200
              ++  +   R+  + + +     RISE L++  +N+      ++++  G K    R V
Sbjct: 148 SQINDDYYAGFRDKVLFFTMLDSMARISELLAIKRENVDLRNGVIKLEADGTKTKVDRFV 207

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+     K + EY +    D    I   LF    G+ L+    ++ +    +  G+    
Sbjct: 208 PISTRTSKLLQEYINETS-DFEQEI---LFLTYDGQVLSANTVRKSLMDYGKAAGINKQV 263

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + H  RHS A   + NGGD  S++SILGH  L  T  Y  +
Sbjct: 264 SPHIWRHSGAILYIMNGGDPFSLKSILGHTTLHMTNHYVQM 304


>gi|217968814|ref|YP_002354048.1| integrase [Thauera sp. MZ1T]
 gi|217506141|gb|ACK53152.1| integrase family protein [Thauera sp. MZ1T]
          Length = 332

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 122/303 (40%), Gaps = 21/303 (6%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           SF  L +R  +   L  +R  S  T+ SY    R  L F       + +     Q+    
Sbjct: 6   SFPALLQR-FFTDRLMQQRRASPHTIGSYRDTFRLLLRFAQMRLGRQPSQLAFEQIDAPL 64

Query: 71  IRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           I AF+ + + ++ I  RS    L+ I+SF +Y      T    I  +  +  S    R  
Sbjct: 65  IAAFLDELQDKRGITARSRNLRLTAIRSFFRYAAFEAPTHAEQIQRVLAIP-SQRFTRTQ 123

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTL 188
                   VD +L     +T W   R+ A+L L    GLR+SE  ++     I+   + +
Sbjct: 124 VGFLTRPEVDALLAAPDRQT-WSGRRDHALLLLAVQAGLRLSELTAMRRDTVILGSGAHV 182

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R  PL       +  +    P + +  I    F   RG  L+    Q Y+ 
Sbjct: 183 LVMGKGRKERATPLTRQTAAVLNAWLKEIPANPDATI----FPSARGTRLSADGVQ-YL- 236

Query: 249 QLRRYLGLPLST---------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            L +++ +   +         T H LRH+ A  LL  G D   I   LGH  + TTQIY 
Sbjct: 237 -LAKHVAVAARSCPSLAQKRVTPHVLRHTTAMELLQAGVDRAVIALWLGHESVETTQIYL 295

Query: 300 NVN 302
           + N
Sbjct: 296 DAN 298


>gi|313906409|ref|ZP_07839747.1| integrase family protein [Eubacterium cellulosolvens 6]
 gi|313468744|gb|EFR64108.1| integrase family protein [Eubacterium cellulosolvens 6]
          Length = 354

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 117/263 (44%), Gaps = 18/263 (6%)

Query: 56  EKITIQTIRQL-----SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL---KYLKKRKI 107
           EK+T+  I +      SYT     I      ++  +++K SLS I S+L    Y+ K   
Sbjct: 80  EKLTVDDIDEFLIASRSYTTPGGMIKDTSPSRL--KAIKSSLSVIFSWLYAHDYIPKDP- 136

Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT---SHETKWIDARNSAILYLLY 164
           T  S  + ++  K  N+L      K+ +  V+N  L T   S   K    R++AI+ L  
Sbjct: 137 TAGSMTIRVKKEKMINTL-EMREVKKLVNTVENSSLSTELKSKRAKKSAYRDTAIILLFL 195

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD-LNL 223
             G+RISE + L  ++I  D+S + +  KG K   V        A+++Y  L     +  
Sbjct: 196 NTGIRISELVGLNLKDIDFDESCIYVTRKGGKPDQVYFNDETAAALMDYIQLERGTYVTE 255

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
             +  LF     K +     Q  IR+  R  L      T H  R ++ + LL    DL++
Sbjct: 256 ECEDALFISAFHKRMAVRSVQEMIRKYSRETLPNKKKVTGHVFRKTYGS-LLYEASDLKN 314

Query: 283 IQSILGHFRLSTTQIYTNVNSKN 305
           +Q++LGH  + TT  Y    SKN
Sbjct: 315 VQAVLGHESIVTTSTYYVNESKN 337


>gi|312876873|ref|ZP_07736850.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796388|gb|EFR12740.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 319

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 120/287 (41%), Gaps = 32/287 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +G S LT++ YE   R      AF+          ++L     R  + +  +Q +   + 
Sbjct: 28  QGRSDLTIRDYEIHIR------AFFKRYPDCFNDTQKL-----RKCLIEYLSQPMKPVTY 76

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--LLHTS 146
              +  +K+FL +  +  I   + I   +        PR  +++     ++ +  LL   
Sbjct: 77  NLRMKNLKAFLSWCVEEGIIPTNPIAKFK--------PRKTDDRIVEIDIETLQKLLQLP 128

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI-----RIVP 201
               +   R+ A++ L    G+R  EA SL   +   D   +++    D       R++P
Sbjct: 129 DRKTFAGLRDYALMLLTLDTGIRPKEAFSLLKDHF--DFKNMQVVIPSDVAKTRVSRVLP 186

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           + P    AI +   +       +  +P+F  + GKPLN   +   +R+  + LG+ +   
Sbjct: 187 ISPVTANAIKKL--ISSRHPQWDDSVPVFCSVTGKPLNRYRWNERMREYSKQLGVKIK-- 242

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            + LRH FA   L NGG   S+Q I+GH  L  T+ Y +   ++  D
Sbjct: 243 PYDLRHMFALLYLKNGGYELSLQKIMGHTTLEMTKKYVHFTQQDLQD 289


>gi|161525981|ref|YP_001580993.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189349304|ref|YP_001944932.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
 gi|160343410|gb|ABX16496.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189333326|dbj|BAG42396.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
          Length = 188

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 11/155 (7%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-------QGKGDKIRIVPLLPSVR 207
           RN A++ L +  G+R+ E  +L   +++D   +L+        Q KG   R V L   +R
Sbjct: 27  RNRAMVLLTHWAGMRVGEVAALLVGDVLDADGSLKSEIRLAPEQTKGRHARTVFLGQKLR 86

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + +  Y        N   + PLF   +          +Y   L +  G+    ++H+ R 
Sbjct: 87  RELAAYVASLK---NPQPEQPLFYTQKRAGFTANTLCQYFHWLYKGAGIQ-GASSHSGRR 142

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           SF T+L S G  +R + S+ GH  +STTQ Y +VN
Sbjct: 143 SFITNLASKGVGVRVLMSLAGHRDISTTQRYIDVN 177


>gi|38637721|ref|NP_942695.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527059|gb|AAP85809.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 420

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 122/273 (44%), Gaps = 30/273 (10%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           R   +F  F     IT     Q+   ++ AF++ +   ++  +S+ R +S ++ FL++L 
Sbjct: 147 RVIALFADFLGSRNITF--FDQVQPADLCAFVTAQ--HRLSAKSVSRIVSDVRCFLRFLL 202

Query: 104 KRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
            R I  +  S++L + ++ +  ++P ++ + + LT +   +  TS + K    R+ AI  
Sbjct: 203 MRGILQQDLSHVLPVVHVPRDATIP-SVWDPEVLTKLLEAVDRTSPKGK----RDYAIFL 257

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYY------ 214
           L    GLR+ +  +L+  ++  + +T+ + Q K      +PL   V +A+++Y       
Sbjct: 258 LACRLGLRVGDIRALSLDDLKWETATIEVRQSKTLTPLCLPLTEEVGEALIDYLRSGRPQ 317

Query: 215 -DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA----HTLRHSF 269
            D     L LN     FR               +R  +   G+   T      H+LRH+ 
Sbjct: 318 SDHREVFLTLNAPFLPFR-------EADSLYWIVRHWKAIAGIHFRTPQRHGLHSLRHTL 370

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           AT LL      + I  ILGH   ++T IY   +
Sbjct: 371 ATRLLHEQTPFQVISDILGHATTASTLIYAKTD 403


>gi|89147636|gb|ABD62677.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 4/70 (5%)

Query: 234 RGKPLNPGVFQRYIRQ--LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           R   ++    Q+ +R   LR  +  P   T H+LRHSFATHLL  G D+R++Q  LGH  
Sbjct: 95  RCHHIDESAMQKAMRAALLRSRISKP--ATCHSLRHSFATHLLERGADIRTVQEQLGHSD 152

Query: 292 LSTTQIYTNV 301
           +  TQIYT+V
Sbjct: 153 VRMTQIYTHV 162


>gi|291521083|emb|CBK79376.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 398

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 122/259 (47%), Gaps = 21/259 (8%)

Query: 57  KITIQTIRQLSYTEIRA-----FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111
           K  +  I  +++T I A     ++SK R   +   S+  +++ ++ F ++L+   I   +
Sbjct: 131 KAVVPDIHDIAWTSITANDVINYLSKER-NDLCTASIGVTVTALRRFFRFLQHHDIVIHT 189

Query: 112 NILNMR----NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++LN+        K + LP  L + +      + L + S  +     R+ +IL      G
Sbjct: 190 SVLNLPLSVPAWSKGSILPITLTKDE-----QSRLSNYSFPSTPTGLRDYSILLCFTELG 244

Query: 168 LRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           LR SE  +L   +I  ++ T+ + + K    R +P+   + KA LE Y +    ++L   
Sbjct: 245 LRCSEVANLQIGDIEWNRGTVIVRKTKTHAERELPMSVKLGKA-LEDYVMNARPISLGSP 303

Query: 227 LPLFRGIRG--KPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSI 283
           L  F+  R   +P +    +  IRQL   +G+       H LR +  ++L + G DL+++
Sbjct: 304 L-YFKSARRMLEPASTDNIRSVIRQLYSKVGITGWHVGTHALRRTVGSYLYNAGNDLKTV 362

Query: 284 QSILGHFRLSTTQIYTNVN 302
             +LGH  +STT+ Y  ++
Sbjct: 363 ADLLGHTSVSTTKAYVRID 381


>gi|330998384|ref|ZP_08322208.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329568490|gb|EGG50295.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 397

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 70/163 (42%), Gaps = 33/163 (20%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSVRKAILE-- 212
           A L+  Y CGLRIS+ L L  +N+       RI     K R    +PL  + RK + E  
Sbjct: 244 AFLFSCY-CGLRISDVLVLKWKNVDSSAEQWRINIIMQKTRQPLYLPLSMNARKWMPERN 302

Query: 213 -------YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
                   +   P +   N+QL            P V         +  G+    T H  
Sbjct: 303 GAGDEDLVFPTLPCEDTCNVQL-----------KPWV---------KAAGITKHVTYHVS 342

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           RH+FAT LL+ G DL ++  +LGH  + TTQIY  + +K   D
Sbjct: 343 RHTFATMLLTLGADLYTVCKLLGHSDVKTTQIYAKIINKKKED 385


>gi|226948086|ref|YP_002803177.1| phage integrase [Clostridium botulinum A2 str. Kyoto]
 gi|226844485|gb|ACO87151.1| phage integrase [Clostridium botulinum A2 str. Kyoto]
          Length = 138

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 6/120 (5%)

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           S + + GKG+K R + L P+ +KAI ++  +    ++N N    LF       +   V Q
Sbjct: 4   SFIYVVGKGNKKREIFLTPAAKKAINDWLHIRNSINVNTN---ALFISRNSNRITTRVIQ 60

Query: 245 RYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTNVN 302
             +++     GL P S + H LRH+ AT +   G  D+RS+Q ILGH  ++TT+IYT+++
Sbjct: 61  NIVKKYVITSGLDPKSISTHKLRHTAATLMYKYGRVDIRSLQQILGHESVATTEIYTHID 120


>gi|312129988|ref|YP_003997328.1| integrase family protein [Leadbetterella byssophila DSM 17132]
 gi|311906534|gb|ADQ16975.1| integrase family protein [Leadbetterella byssophila DSM 17132]
          Length = 275

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 18/148 (12%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYD-L 216
           +L ++Y  GL+++EA++L   +I  + +T++I   +  K R++ L P++   I EY    
Sbjct: 121 LLIMIYNNGLKVNEAINLKVGDIDTENNTIKIDADQPKKSRLLRLSPALNGLIEEYKQKY 180

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPG-----VFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
            P D+        F G  G           VFQ+ +++ +      L+T    LRHSFA 
Sbjct: 181 KPSDV-------FFPGSGGIGHYSARNIQLVFQKALKEAKIEKAAKLTT----LRHSFAV 229

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           H L NG  +  +Q ILGH  + TT  Y 
Sbjct: 230 HSLENGISINHLQKILGHSNIQTTSFYA 257


>gi|270293803|ref|ZP_06200005.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275270|gb|EFA21130.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 386

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 115/282 (40%), Gaps = 44/282 (15%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAF---ISKRRTQKIGDRSLKRSLSGIK--SF 98
           R  L +L  Y +EK T + I        + F   + K   ++ G R  +    G+   S 
Sbjct: 117 RSCLRYLEIYCDEKTTFKDITPEFIAGFKDFLDNVEKDTHKRTGPRRERDVFQGLSQNSK 176

Query: 99  LKYLKKRKITT----ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + Y  K +       +  I+++  L+       A  ++  LTL +   L  +     I  
Sbjct: 177 VSYFNKLRACINQAYDERIISVNPLRGIEGFKAAEVKRDYLTLEEVKQLAATPCRYPILK 236

Query: 155 RNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           R       L+ C  GLR S+   LT   +         Q  GD  RI+      +    E
Sbjct: 237 RA-----FLFSCLTGLRKSDIQKLTWSEV---------QKFGDYTRII--FKQKKTGGQE 280

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR------QLRRY---LGLPLSTTAH 263
           Y D+ P       Q   + G RG P +P VF  +        +L+R+    G+  + T H
Sbjct: 281 YLDISP-------QAEKYLGERGNPEDP-VFTGFTYGSWTSVELQRWSMKAGVNKNLTFH 332

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             RH+FA  +L  G D+ ++  +LGH  L+TTQIY  V  KN
Sbjct: 333 CGRHTFAVLMLDLGADIYTVSKLLGHKELATTQIYAKVLDKN 374


>gi|47565414|ref|ZP_00236456.1| putative integrase-recombinase [Bacillus cereus G9241]
 gi|208742323|ref|YP_002267775.1| integrase family protein [Bacillus cereus]
 gi|47557768|gb|EAL16094.1| putative integrase-recombinase [Bacillus cereus G9241]
          Length = 390

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 67/153 (43%), Gaps = 10/153 (6%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           N  IL  L   G RI E  +   +++  D +  L++ GKGDK R + +   + + I E  
Sbjct: 218 NYTILLALASTGARIQELCTARVKDLHYDGKYWLKVTGKGDKARELFIPEHLFQCISEMR 277

Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266
               F   L+   + PLF   RG   NP      +  + +   L          TAHT R
Sbjct: 278 RRRGFQTILDRGDECPLFVNQRGNFYNPKTLSNQVTDMIKKTNLDFLKYRENPVTAHTFR 337

Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
           H+FA   +  G  DL  +   LGH  + TT+IY
Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370


>gi|229078262|ref|ZP_04210827.1| Transposition regulatory protein TnpA [Bacillus cereus Rock4-2]
 gi|228705062|gb|EEL57483.1| Transposition regulatory protein TnpA [Bacillus cereus Rock4-2]
          Length = 374

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 16/155 (10%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------GKGDKIRIVPLLPSVR 207
           R+S ++ LL+  GLRI E LSL  ++ + D    +I+         G K++    +  + 
Sbjct: 190 RDSFLIQLLFETGLRIGEVLSLFMEDFIFDYKGHKIRLTDRGELENGAKLKTGERMIFIS 249

Query: 208 KAILEYYD------LCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +++++ YD      +   D++ N      RG  +G+P+  G  +   ++LR+  GL +  
Sbjct: 250 QSLMDLYDDYQYEVIDKLDIDTNFVFVKLRGENKGRPMTYGDVESLFKRLRKKTGLAVH- 308

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             H  RH+ AT       D++ +Q  LGH  + TT
Sbjct: 309 -PHLFRHTHATLYYQETKDIKQVQERLGHTNIQTT 342


>gi|298245229|ref|ZP_06969035.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297552710|gb|EFH86575.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 368

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 25/176 (14%)

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPS 205
           E++ +  R+ AIL  L   G+R  E  +LT  N+  D   + +R+ GKG K   V L   
Sbjct: 173 ESEHLQVRDRAILACLLDSGIRAHELCTLTIGNVCLDSKDAHIRVFGKGGKWGEVGLGEQ 232

Query: 206 VRKAILEYYDL-----CPFDLNLNIQ-LP----------------LFRGIRGKPLNPGVF 243
            R+AI +Y  +       +++   +Q LP                +F    GK L     
Sbjct: 233 ARRAIQKYVRMFREPTIEYEIREQLQRLPARQAQQIKRQALGKALVFVNRSGKALTISGL 292

Query: 244 QRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            R + +L  + G+  +  + HT RH+ A   + NGG++  +  +L H  +STT+ Y
Sbjct: 293 YRMVDRLGSWAGIEGVRCSPHTFRHTMAAMFIRNGGNIYQLSKLLRHASVSTTEEY 348


>gi|298253182|ref|ZP_06976974.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
 gi|297532577|gb|EFH71463.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
          Length = 298

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 91/215 (42%), Gaps = 34/215 (15%)

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE---KQALTLVDNVLLHTSHET 149
           S I+SF  Y+ + +I   +  + +  ++K  ++P    +   + AL  V           
Sbjct: 100 STIRSFYSYMIEEEIIDVNPTVKLPKIRKEYAIPHPCPDYIIRGALARVRG--------- 150

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVR 207
              +    A+L L   CGLR SE   ++  +IM  +    L + GKG K R VP+ P + 
Sbjct: 151 ---NKEYEAMLRLGAECGLRRSEIAQVSSSDIMMLNTHPQLLVHGKGRKERTVPIAPDLA 207

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + I             N    +F G     +       +I QL   LG   ST  H+LRH
Sbjct: 208 QIIA------------NKHGYMFPGRWTGHVEASYIAHHISQL---LGNGYST--HSLRH 250

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            + T    +  DL  +  +LGH  + TTQIY ++ 
Sbjct: 251 RYDTKAYESTHDLLLVSKLLGHASVETTQIYISLT 285


>gi|260587709|ref|ZP_05853622.1| integrase/recombinase, phage integrase family [Blautia hansenii DSM
           20583]
 gi|331084000|ref|ZP_08333107.1| hypothetical protein HMPREF0992_02031 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541974|gb|EEX22543.1| integrase/recombinase, phage integrase family [Blautia hansenii DSM
           20583]
 gi|330402362|gb|EGG81932.1| hypothetical protein HMPREF0992_02031 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 355

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 130/288 (45%), Gaps = 35/288 (12%)

Query: 38  SYECDTRQFLIFLAFYT---EEK----ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK- 89
           SY  D R F  FL       +EK    I+IQ +  L   +   F    +  +  D  L+ 
Sbjct: 48  SYAYDLRVFFRFLQETNPSLKEKSLSEISIQDLSLLEPVDFEEFQEYLKAYQSADNKLET 107

Query: 90  -------RSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSLPRALNEKQALTLVD- 139
                  R +S ++SF  YL KR++ T + +  ++M  +K+   +   L+  +   L+D 
Sbjct: 108 NSRTGIARKMSCLRSFYDYLCKRQLLTSNPVRLVDMPKIKEKAII--QLDPDEVANLLDY 165

Query: 140 ---------NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
                     V L+  ++ K+   R+ AI+ LL G G+R+SE + L   +I    + +RI
Sbjct: 166 IENYGKQLSGVKLYHYNKQKY---RDIAIVTLLLGTGVRVSELVGLNIGDIDFKNNGIRI 222

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN--LNIQLPLFRGIRGKPLNPGVFQRYIR 248
             KG    IV     V +A+ +Y ++    +      +  LF   + K ++    ++ ++
Sbjct: 223 LRKGGNEMIVYFGAEVEQALKDYLEISRNSITPLSGHEDALFLSGQRKRISVDAVEKMVK 282

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           +    + +  + T H LR ++ T L    GD+  +  +LGH  ++TT+
Sbjct: 283 KYASAVSVK-TITPHKLRSTYGTALYRETGDIYLVADVLGHSDVNTTK 329


>gi|319774882|ref|YP_004134151.1| integrase family protein [Thermovibrio ammonificans HB-1]
 gi|317115230|gb|ADU97719.1| integrase family protein [Thermovibrio ammonificans HB-1]
          Length = 279

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 74/149 (49%), Gaps = 23/149 (15%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTL--RIQGKGDKIRIVPLLPSVRKAILEYYD 215
           A L + Y  GLR SE LSL+  +   + + L  R++GKG K R+VPL   V + I E   
Sbjct: 132 AALLMAY-AGLRASEVLSLSKFSFQREGNRLIVRVKGKGGKERVVPLPAGVSREIEE--- 187

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR---RYLGLPLSTTAHTLRHSFATH 272
                 NLN+  PLF+       +   + R  R+LR   + +G+      H LRH+F T 
Sbjct: 188 ------NLNL-FPLFK------WSSSPYYRLYRKLRQAGKRVGIA-DFHPHRLRHTFGTE 233

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           L   G     I++++GH  L+TT  Y  +
Sbjct: 234 LARRGVRPEVIRTLMGHSNLNTTAGYIGI 262


>gi|75812296|ref|YP_319915.1| Phage integrase [Anabaena variabilis ATCC 29413]
 gi|75705052|gb|ABA24726.1| Phage integrase [Anabaena variabilis ATCC 29413]
          Length = 320

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 104/232 (44%), Gaps = 28/232 (12%)

Query: 81  QKIGDRSLKRSLSGIKSFLK---YLKKRKITTESNILNMRNLKKSNSL-PRALNEKQALT 136
           QK    +  + L  ++  LK    L+    T  +  ++ +N+K    L  RAL   +   
Sbjct: 77  QKYAPATTNKMLCALRRVLKEALRLELMDATDYAKAVDFKNVKVKRKLRGRALTSAEIAA 136

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L++  L   +        R++A++ +L G G+R +E ++L  +++  + +    QGKGDK
Sbjct: 137 LIEVCLCDPTP----CGVRDAALIAILRGAGVRRAEVVNLELRDLSSNGALEIRQGKGDK 192

Query: 197 IRIVPLLPSVRKAILEYY----------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            R V  LP+   A++E +           LCP      +QL        + + P      
Sbjct: 193 DRTV-YLPTAAMALVEDWLRVRGRKTGALLCPIRKGGQVQL--------RRMTPQAVLLI 243

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +R+     G+  S + H  R +F + LL +G D+ ++Q + GH   +TT  Y
Sbjct: 244 VRKRASESGVE-SFSPHDFRRTFCSDLLDSGTDIVTVQKLAGHASPATTSKY 294


>gi|271965863|ref|YP_003340059.1| Site-specific recombinase XerD-like protein [Streptosporangium
           roseum DSM 43021]
 gi|270509038|gb|ACZ87316.1| Site-specific recombinase XerD-like protein [Streptosporangium
           roseum DSM 43021]
          Length = 375

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 82/169 (48%), Gaps = 11/169 (6%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           R++ I+ LL   G R+SE +    ++    D     RI GKG K R VPL   V + +LE
Sbjct: 205 RDALIVLLLSTMGPRVSELVRANVEDFYTNDGVRYWRIFGKGGKTRDVPLPGDVAR-VLE 263

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL--STTAHTLRHSFA 270
            Y L      +  +  L    RG+ L  G  Q  I +++R +      S T H LRH+ A
Sbjct: 264 AYLLERGRAEVQDK-ALLLSWRGRRLARGDVQAVIDRVQRRVDPDRRRSVTPHGLRHTTA 322

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           THLL++  D+ +++ +LGH  L+T   Y +          +E+  + HP
Sbjct: 323 THLLADAVDMDAVRRVLGHSDLATLGRYRDELPGE-----LEVAMRAHP 366


>gi|258514691|ref|YP_003190913.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257778396|gb|ACV62290.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 316

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 108/275 (39%), Gaps = 29/275 (10%)

Query: 39  YECDT--RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           Y C +  RQFL F A        +Q IR +    I+ FI  RR Q I ++ +K  +  ++
Sbjct: 44  YRCKSSMRQFLFFCA----NNYRMQNIRNIQDKHIKDFIEYRRDQGINEKVIKNDIWAVR 99

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
            F +Y  K K     N +          + RA  E +   ++D        +  +     
Sbjct: 100 LFHRYTPKAKNRISDNEVFGLKSTPDGRVDRAWTEGEFKKMLDFAEKLGRQDVAFT---- 155

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-----IQGKGDKIRIVPLLPSVRKAIL 211
              + L    GLRI E L L+ +   D ++ LR     ++GKG + R + L     +A+ 
Sbjct: 156 ---MRLAQHAGLRIHECLRLSKE---DAEAALRTGILHVKGKGGRERDLKLSSEALQALS 209

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           E       D       P  +    K    G   ++  + R       + T H LRH+FA 
Sbjct: 210 EASVRINNDAGKLFVRPGQKTHSAKKSIEGFISKHRDKFRELEDREKNMTFHGLRHTFAR 269

Query: 272 ----HLLSNGGDLR----SIQSILGHFRLSTTQIY 298
                 +  G D++     +  ILGH R   T+IY
Sbjct: 270 KEYFQRIDRGMDIQRALVEVSRILGHNRPEVTKIY 304


>gi|149916559|ref|ZP_01905074.1| Integrase [Roseobacter sp. AzwK-3b]
 gi|149809533|gb|EDM69392.1| Integrase [Roseobacter sp. AzwK-3b]
          Length = 189

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 12/181 (6%)

Query: 133 QALTLVDNVLLHTSH--ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR- 189
           QA T  D  L    H   T+    R+  I+   +  GLR  E  +L   ++ DDQ  +R 
Sbjct: 3   QAQTFSDTQLKRILHWCSTRRHPTRDRTIVLTSFYAGLRAKEIAALKVGDVYDDQGAVRD 62

Query: 190 ------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
                  Q KG K R V +   +R+ ++EY D      + +   PLF   +G   +    
Sbjct: 63  QFTLTAAQAKGGKSRTVWINRRLRRQLVEYRDAVLG--SRSTAEPLFVSQKGGAFSANTM 120

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            +    + +  G   + ++H+ R SF T+L +    +R +  + GH  + TTQ Y +VN 
Sbjct: 121 TQLFLVIYKSAGFA-NASSHSGRRSFITNLAAKSVSVRVLAELAGHSSIQTTQRYIDVNP 179

Query: 304 K 304
           K
Sbjct: 180 K 180


>gi|89147630|gb|ABD62674.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 38/60 (63%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           V  + ++   R  GL      HTLRH FA HLL +G D+R++Q +LGH  ++TT IYT+V
Sbjct: 103 VLHKAVKHAIRQAGLEKRGRCHTLRHGFAPHLLEDGYDMRTVQELLGHKDVTTTMIYTHV 162


>gi|157502123|ref|YP_001485222.1| TnpI resolvase [Bacillus thuringiensis]
 gi|228911345|ref|ZP_04075148.1| TnP I resolvase [Bacillus thuringiensis IBL 200]
 gi|228943117|ref|ZP_04105604.1| TnP I resolvase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228956360|ref|ZP_04118192.1| TnP I resolvase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228969737|ref|ZP_04130512.1| TnP I resolvase [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228975589|ref|ZP_04136137.1| TnP I resolvase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228982244|ref|ZP_04142527.1| TnP I resolvase [Bacillus thuringiensis Bt407]
 gi|135957|sp|P10020|TNRI_BACTU RecName: Full=TnP I resolvase
 gi|40317|emb|CAA31832.1| TnpI resolvase [Bacillus thuringiensis]
 gi|40348|emb|CAA30491.1| unnamed protein product [Bacillus thuringiensis]
 gi|87133428|gb|ABD24338.1| TnpI resolvase [Bacillus thuringiensis]
 gi|117553204|gb|ABK35132.1| putative Tn4430 TnpI resolvase [Bacillus thuringiensis serovar
           aizawai]
 gi|145559600|gb|ABP73626.1| TnpI resolvase [Bacillus thuringiensis]
 gi|228777484|gb|EEM25768.1| TnP I resolvase [Bacillus thuringiensis Bt407]
 gi|228784127|gb|EEM32158.1| TnP I resolvase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228789977|gb|EEM37784.1| TnP I resolvase [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228803317|gb|EEM50104.1| TnP I resolvase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228816555|gb|EEM62693.1| TnP I resolvase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228848282|gb|EEM93133.1| TnP I resolvase [Bacillus thuringiensis IBL 200]
 gi|326943288|gb|AEA19183.1| TnpI resolvase [Bacillus thuringiensis serovar chinensis CT-43]
 gi|326943302|gb|AEA19197.1| TnpI resolvase [Bacillus thuringiensis serovar chinensis CT-43]
 gi|326944009|gb|AEA19895.1| TnpI resolvase [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 284

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 118/273 (43%), Gaps = 24/273 (8%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLS 93
           T+Q Y    RQ++ +     + K+T     +L    I  +IS  +  K +  +S+   +S
Sbjct: 20  TVQGYTSGIRQYIKWFEGSYDRKLT-----KLYRQNILEYISYLKNVKMLNAKSINHKIS 74

Query: 94  GIKSFLKYLKKRKITTESNIL--NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
            +  F ++L ++    +  IL  +M  ++   + P  + E      + +VL         
Sbjct: 75  SLAKFNEFLIQKGSQQDQVILKTDMIKVQTVYASPTQIVELDVKKFLQSVLEDN------ 128

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQ--NIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
            + RN AI  LL   G+RISEALS+     N+   +  +R  GKG K RIV L   V  A
Sbjct: 129 -NKRNYAIATLLAYTGVRISEALSIKMNDFNLQTGECIIR-SGKGGKQRIVLLNSKVLSA 186

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           I +Y          +    LF   + + L+  V  R  +     +      T H LRH F
Sbjct: 187 IKDYLIDRKTYSTAHESPYLFISKKREKLDRTVVNRIFKSYSNVI------TPHQLRHFF 240

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            T+ +  G  +  + +  GH  + TT +YTN N
Sbjct: 241 CTNAIEKGFSIHEVANQAGHSNIHTTLLYTNPN 273


>gi|296165373|ref|ZP_06847914.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295899264|gb|EFG78729.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 373

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 78/178 (43%), Gaps = 41/178 (23%)

Query: 155 RNSAILYLLYGCGLRISE--------------ALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           R++ +  ++YG GLRI+E              A  L P   +  +     +G   K R V
Sbjct: 188 RDTTMFKVMYGWGLRINELCRLDLADMYRNPHAPELGPCGFLHVRYGKASRGSPPKRRTV 247

Query: 201 P-LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-------------PGVFQRY 246
           P L+P   +A+L+Y +        NI+ PL+   + + L               G F   
Sbjct: 248 PTLMPWAAEALLDYVN--------NIR-PLYEPGQKQALWLTERRSQVKVRTLTGTFD-- 296

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              +R  +GL    T H  RHSF +H+  +G D R +Q I GH   STT IYT+V  +
Sbjct: 297 --DIRDEVGLDRKLTPHCFRHSFISHMTEDGVDPRFLQEISGHRFASTTGIYTHVTGE 352


>gi|295401863|ref|ZP_06811827.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|294976117|gb|EFG51731.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
          Length = 191

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 10/183 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-I 83
           L+IE+  S  T+  +  + R F  FL    +   ++Q +  ++ T +R FI  + T++ +
Sbjct: 14  LQIEKNYSLNTVDGHAYNLRCFENFLV---QHGYSVQ-LHDITKTHVRHFIQHQITKENV 69

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
             R++ R +S +KSF KY  K  +     ++ +   K  + LP  +    +L+ +  +  
Sbjct: 70  KPRTIYRRISCLKSFSKYCVKENLIDNDFMIGIDTPKTDSKLPTYM----SLSELRKLFH 125

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
               +   +  RN  +  LL   G+R SE + LT + I    +T+RI GKG K R++P  
Sbjct: 126 FLEQDNSRMAMRNHLLFKLLATTGMRRSEIVELTWEQIDLSNNTIRIYGKGKKERLLPFC 185

Query: 204 -PS 205
            PS
Sbjct: 186 TPS 188


>gi|139439113|ref|ZP_01772565.1| Hypothetical protein COLAER_01575 [Collinsella aerofaciens ATCC
           25986]
 gi|133775460|gb|EBA39280.1| Hypothetical protein COLAER_01575 [Collinsella aerofaciens ATCC
           25986]
          Length = 399

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 70/161 (43%), Gaps = 21/161 (13%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG--------------KGDKIRIVPLLPS 205
           +YL    GLR  E   L  ++       L + G              KG ++R V L P+
Sbjct: 216 VYLALNTGLRCGEICGLQRRDWRRALHDLHVVGQAVEHPELHRQAYTKGRRVRNVALAPA 275

Query: 206 VRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           V   +  + D    D  L  + P    +  G  G    P       + L R LGLP  T 
Sbjct: 276 VEAQLQRHLDWQ--DTWLARKGPTALVVTFGPAGAIARPSTVTSRFKSLVRDLGLPEETV 333

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
            H+LRH+ A+ LL NG D+R+IQ  LGH  + TT  IY +V
Sbjct: 334 FHSLRHTHASWLLMNGFDMRTIQERLGHASVKTTLDIYGSV 374


>gi|99034637|ref|ZP_01314587.1| hypothetical protein Wendoof_01000596 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 144

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 70/137 (51%), Gaps = 1/137 (0%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + W + L   R  S  TL+SY  D +  + FL  +   ++ + T+ +LS  E+R++++ R
Sbjct: 8   EKWYEWLRCNRSYSPNTLESYMRDLKDLISFLNTHIGGEVNVGTLEKLSVPELRSWLTSR 67

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +  RS  R+LS I++F KY+K         + ++    +  +LP+AL+     TL+
Sbjct: 68  YARGVNARSNTRALSVIRNFFKYIKNNHNIDNEAVFSLSRPIQRRTLPKALSIPDIKTLL 127

Query: 139 DNVLLHTSHETKWIDAR 155
             + L    E+ W+  R
Sbjct: 128 KEMKLSDLGES-WVVKR 143


>gi|168212716|ref|ZP_02638341.1| transposase A from transposon [Clostridium perfringens CPE str.
           F4969]
 gi|170715669|gb|EDT27851.1| transposase A from transposon [Clostridium perfringens CPE str.
           F4969]
          Length = 375

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 75/159 (47%), Gaps = 16/159 (10%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRI-----QGKGDKIR-----IVPLL 203
           R+  IL LLY  GLRI+E L    ++I   +    +I        G +++     I+ L 
Sbjct: 193 RDRLILALLYEGGLRINEVLGAHFEDISQLEDGIFKIVPRENNENGARVKNYAAGIIKLP 252

Query: 204 PSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           P V   IL+Y   D+  +D N  + L L+   +G P+     Q+   +L + +G  +   
Sbjct: 253 PYVIDMILDYINSDILEYDSNF-VFLNLYGKNKGTPIKAITIQKLFDRLSKKVGYHVH-- 309

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            H LRH FAT  L  G +L  I   L H  + +TQIY +
Sbjct: 310 PHMLRHGFATEKLEIGWNLEDISRYLRHKNIQSTQIYAH 348


>gi|123441204|ref|YP_001005191.1| integrase [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|122088165|emb|CAL10953.1| integrase [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 332

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 105/238 (44%), Gaps = 36/238 (15%)

Query: 68  YTEIRAFISKRRTQKIGD----RSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKS 122
           Y   R F+ + R+Q++       ++ R LS +   F   ++  +  +E+ I  +  L+  
Sbjct: 99  YMITRKFLMEYRSQRLSSGLSPATVNRDLSVLSGMFSTLIEAEEFHSENPICAVSKLRLK 158

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           NS    L+E + + L+              D R  A+L L    G R  EA +L  ++I+
Sbjct: 159 NSEMSFLSEDEIVDLLSKAT---------GDQRRIALLCL--STGARWGEAKNLRGEHIV 207

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
            ++ T  ++ K  KIR +P+   +   I        F+ + N     FR +  K L P  
Sbjct: 208 GNKVTF-VETKNGKIRSIPISDEMLTIIKTKKSGQLFNADYN----EFRSLL-KELKPD- 260

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                        LP    +H LRH+FATH + NGG++ ++Q ILGH  +  T  Y +
Sbjct: 261 -------------LPKGQASHALRHTFATHFMMNGGNIITLQRILGHSNIQQTMNYAH 305


>gi|332638801|ref|ZP_08417664.1| integrase [Weissella cibaria KACC 11862]
          Length = 363

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 69/159 (43%), Gaps = 15/159 (9%)

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
           + K I  R   ++YL+   GLR  EAL+LT  +I  D  T+ +  K  ++      P  +
Sbjct: 184 DEKLITWRTGFMVYLISLSGLRAGEALALTKNDIDSDARTINV-SKTKQLSGAVTTPKTK 242

Query: 208 KA----------ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
            +             Y        + N    LF G R     P V  R++ +L + LG  
Sbjct: 243 TSNRTIVMPNRFFDSYQKFIDAKEHWNSANELFDGRR----TPSVVNRWLERLEKKLGFE 298

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
              + H LRHS  ++LLS+G D+      LGH  +S TQ
Sbjct: 299 NIISLHGLRHSHVSYLLSSGVDISYASKRLGHSNISITQ 337


>gi|257452338|ref|ZP_05617637.1| integrase/recombinase [Fusobacterium sp. 3_1_5R]
          Length = 262

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 119/265 (44%), Gaps = 30/265 (11%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E +  +Q ++ +LE++RGLS+ +L++ + D  QFL ++  Y + ++T+ T++   +    
Sbjct: 3   EFILWKQKYIHHLELQRGLSQNSLRAIQKDLEQFLNYMEEYQDGELTVLTLKSYFF---- 58

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
                   +K    +++R +S IK FL++LK+  I  E   L    ++K         E+
Sbjct: 59  -----HLQEKHASNTIQRKISSIKVFLRFLKEENIVQEDFSLYFTKVRK---------EE 104

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
             +   +  +          + R+ AI  LLY  G++  E LSLT   I   +  +    
Sbjct: 105 DTILFFEKDVWEQFRRAFENNLRDKAIFELLYSTGMKPKEFLSLTYLQIEWQKQEIYFFQ 164

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K +  R V      ++A+  Y   C        ++  F     +     +F++Y  ++  
Sbjct: 165 KKES-RTVFFSHRAKEALWNY---CEEKGRKEGRIWDF----SEKTLRNIFKKYREKIS- 215

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNG 277
             GL  + T ++ RH+FA  LL  G
Sbjct: 216 --GLE-NMTIYSFRHTFAITLLRAG 237


>gi|228924542|ref|ZP_04087741.1| Integrase-recombinase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228835124|gb|EEM80566.1| Integrase-recombinase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 390

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 10/153 (6%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           N  IL  L   G RI E  +   +++  D +  L+I GKGDK+R + +   + + I E  
Sbjct: 218 NYTILLALASTGARIQELCTARVKDLHYDGKYWLKITGKGDKVRELFISEHLYQCICEMR 277

Query: 215 --DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266
               C   L+   + P+F   RG   N       +  + +   L          TAHT R
Sbjct: 278 LRRGCQTVLDKGDESPVFINQRGNTYNSKTLSNQVTDMIKKTNLEFLLYRENPVTAHTFR 337

Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
           H+FA   +  G  DL  +   LGH  + TT+IY
Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370


>gi|120406876|ref|YP_956705.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119959694|gb|ABM16699.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 329

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 127/294 (43%), Gaps = 36/294 (12%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA--------FISKRR 79
           +R +S  T+ SY    R  L  L  + +E+ T +T  +L +T++ A         +   R
Sbjct: 19  QRQVSPRTIASY----RDSLRLLIGFAQER-TGKTPSRLEWTDLDADLIASFLDHLEHVR 73

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                 R+L+  L+ I+S   +   R      +  +   +++  ++P    +KQ +T + 
Sbjct: 74  HNSARTRNLR--LTAIRSLFGFAALR------HPEHAEVIQQVLAIPAKRFDKQLITFLT 125

Query: 140 ----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKG 194
                 L+      +W   R+ A+L L    GLR++E   L   +I   D S++R  GKG
Sbjct: 126 ATEIEALIDAPDTDRWEGRRDRALLLLASQTGLRVAEMTGLNCSDITFGDGSSIRCMGKG 185

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR-----Q 249
            K R VPL  +  +A+L  +     D+      PLF    G+ L+    +R +R      
Sbjct: 186 RKRRAVPLT-TTTQAVLRVWLTERGDVP---DQPLFPTRTGRRLSTDTVERLVRLHAATA 241

Query: 250 LRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            R    + P     H LRH+ A  LL  G D   I   LGH  + +T IY + +
Sbjct: 242 ARTCPTIRPAELHPHVLRHTCAMSLLHAGIDTAVIALWLGHADIRSTGIYLHTD 295


>gi|119869601|ref|YP_939553.1| phage integrase family protein [Mycobacterium sp. KMS]
 gi|119695690|gb|ABL92763.1| phage integrase family protein [Mycobacterium sp. KMS]
          Length = 300

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 114/287 (39%), Gaps = 19/287 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +W   L  E G +  T+++Y      FL + A          T   ++   ++ FI    
Sbjct: 14  SWQLALRSE-GKAPGTIKTYTDGVAAFLRWCA-------ATDTPPAITKPAVQGFIGDLL 65

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  +      G++ F +++          ++ ++   +   +  AL++ Q   L+D
Sbjct: 66  DGGAESATAVARFKGVRQFARWMADEGEIDGDPLVGLKRPAQVRKVVPALSDDQLRALLD 125

Query: 140 NVLLHT-SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--QGKGDK 196
                T  H       R+ AI+ L+   G+R +E L LT  ++ D    L I  +GKG K
Sbjct: 126 ACRGKTLKHR------RDEAIVRLMAETGMRAAELLGLTVADV-DLTRGLAIVRRGKGSK 178

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+VP  P    A+  Y      +  L    PL+ G  GK          +++     G+
Sbjct: 179 GRVVPFGPQTGAALDRYVRSARRENRLTDHGPLWVGAGGKTFGYHGLDGTLKERAAAAGI 238

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             +  AH LRH+ AT  L  GG  + + ++ G    +    YT  ++
Sbjct: 239 -ANFHAHRLRHTAATRWLRAGGSEQGLMAVAGWSTRAMIDRYTGASA 284


>gi|325661848|ref|ZP_08150469.1| hypothetical protein HMPREF0490_01205 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471826|gb|EGC75043.1| hypothetical protein HMPREF0490_01205 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 322

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 119/285 (41%), Gaps = 40/285 (14%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRAFISKRRTQKIGDRS- 87
           G S+ T+Q Y     + L            IQT +R++S  EIR ++     QKI D S 
Sbjct: 59  GCSERTIQYYSVTVDKMLQ----------KIQTPVRKISTEEIRKYLVD--YQKINDCSK 106

Query: 88  --LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
             +      I SF  +L++     +S +  +  +K    +   ++++    L D+     
Sbjct: 107 VTVDNVRRNISSFFSWLEEEDYILKSPMRRIHKIKTKQPVKEIISDEAIEMLRDHCQC-- 164

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
                    R+ A++ LLY  G+R+ E ++L   ++  +     + GKGDK R V     
Sbjct: 165 --------PRDLAMIDLLYSTGIRVGELVNLNISDVDFEARECVVFGKGDKERRVYFDAK 216

Query: 206 VRKAILEYY----DLCPFDLNLNIQLPLFR-GIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
            +  +L Y     D  P  L + + +P  R  I G  +        IR L R L +    
Sbjct: 217 AKLHLLNYLSERKDNNPA-LFVTLDVPYDRLKISGVEIR-------IRTLGRKLNME-KI 267

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN  N
Sbjct: 268 HPHKFRRTMATRAIDKGMPIEQVQKLLGHSQIDTTMQYAIVNQTN 312


>gi|89147606|gb|ABD62662.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            Q  + +  R  G+    + H+ RHSFATHLL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 104 LQNAVSRAVRVAGVLKPASCHSFRHSFATHLLEAGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|89147460|gb|ABD62590.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 39/59 (66%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            Q+ ++   R  G+      HT+RHS+ATHLL NG ++R +Q ++GH  + TT+IYT+V
Sbjct: 104 LQKAVKTAVRQAGITKRVGCHTMRHSYATHLLENGINIRMVQELMGHKDVKTTEIYTHV 162


>gi|251779032|ref|ZP_04821952.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083347|gb|EES49237.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 335

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 73/151 (48%), Gaps = 3/151 (1%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R  A+  LL     RISE  ++   +I   + ++++ GKG K RIV    +  K  LE Y
Sbjct: 178 REKALFELLDSTACRISEIQNIKLPDINWHEKSIKVLGKGSKERIV-YFSTRAKLALENY 236

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                D N +  L + +  + K +     Q  I+++    G+     AH  R + AT LL
Sbjct: 237 IKDRSDNNNS--LFISKKFKNKTIGVRSLQNIIKKIYERSGVTERVYAHKFRRTQATRLL 294

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           + G  +  +Q ILGH   +TTQIY  ++ +N
Sbjct: 295 NQGMRIEGVQGILGHTTPTTTQIYAQLSQEN 325


>gi|288962457|ref|YP_003452752.1| integrase [Azospirillum sp. B510]
 gi|288914723|dbj|BAI76208.1| integrase [Azospirillum sp. B510]
          Length = 190

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 80/181 (44%), Gaps = 13/181 (7%)

Query: 132 KQALTLVDNV---LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           KQA  L +     LL    +T++  ARN     L Y  GLR+ E  +LT  +++D Q  +
Sbjct: 2   KQARVLTEQEQRRLLAVIADTRYA-ARNRIAFMLSYMGGLRVGEIAALTVGDVLDGQGGV 60

Query: 189 RIQ-------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
           R Q        KG   R   +   +RK + E Y           + PL    +GKP    
Sbjct: 61  REQIRLSAEITKGGHARTAFVNDRLRKEV-ERYTAGLNAKQREPERPLLVTQKGKPFTAN 119

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           V  + +  L +  G     ++H+ R  F T L  +G   + I ++ GH  LSTTQ Y +V
Sbjct: 120 VLCQLMGGLYKQAGFD-GASSHSGRRWFITKLAHSGVSAKVIMTLAGHKHLSTTQRYIDV 178

Query: 302 N 302
           N
Sbjct: 179 N 179


>gi|288557179|ref|YP_003429246.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4]
 gi|288548473|gb|ADC52354.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4]
          Length = 368

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 144/324 (44%), Gaps = 62/324 (19%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTE--------EKITIQTIRQLSYTEIRAF--------- 74
           S LTL +Y  D ++FL +L   +E        +++++ T+  LS  E +AF         
Sbjct: 36  SSLTLFNYARDYQEFLKWLI--SEGISDANDIKEVSVDTLANLSLQEAQAFFKTMLRRKY 93

Query: 75  -ISKRRTQ--KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-----RNL------- 119
            +SK+  +  ++ ++++ R  S ++S  KYL     T E+   N      RN+       
Sbjct: 94  LVSKKSEEYKQVQEKTVNRMKSALRSLFKYL-----TVEAEAENHEPYFHRNVMQKIPVH 148

Query: 120 KKSNSLP-RALN--EKQALTLVDNVLLH----------TSHETKWID---ARNSAILYLL 163
           K S S   RA N  EK  +   D   LH          T  + ++      R+ AIL L 
Sbjct: 149 KVSESRSERAANMTEKIFIENADADFLHYVQKEYELTLTKGQMRYFKRDKERDFAILSLF 208

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL----CPF 219
            G G+R++E  +L   ++   Q  +R+  KG+K   V ++P     +  Y ++       
Sbjct: 209 LGSGIRLNELSNLKLGDVDFTQKVIRVIRKGNKKDSVTVIPEALDDLKTYLEIRNERYNA 268

Query: 220 DLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
           D + +  + + +G  G  PL+    Q+ I +        +S   H LRH++AT+L    G
Sbjct: 269 DGDPHAYVFITKGKNGYSPLSNRAIQKIIAKYTESYDKRMS--PHKLRHTYATNLAEQTG 326

Query: 279 DLRSIQSILGHFRLSTTQIYTNVN 302
           D+  + + LGH    T+ +Y N +
Sbjct: 327 DIPLVMTQLGHSSPETSLLYINTS 350


>gi|329766993|ref|ZP_08258521.1| hypothetical protein HMPREF0428_00218 [Gemella haemolysans M341]
 gi|328837718|gb|EGF87343.1| hypothetical protein HMPREF0428_00218 [Gemella haemolysans M341]
          Length = 348

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 5/152 (3%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
           AR+ AIL L    G+R++E  +L  ++I    S + +  KG+K+  V +  S    + EY
Sbjct: 190 ARDLAILTLFLKSGIRVNELANLKVKDIDFLNSEINVIRKGNKVDTVIITKSALDRLNEY 249

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
               PF LN    + + +   G  L+    Q+ + +      +P+S   H LRHS+ T L
Sbjct: 250 ITSLPFKLNREDYVFISKNKAG--LSIRAIQKLVMKYTDAFNVPMS--PHKLRHSYGTKL 305

Query: 274 -LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            L   G++  I + +GH    T+ +Y N + K
Sbjct: 306 ALKTNGNIPIIMTQMGHSNSDTSMLYINESKK 337


>gi|124001375|emb|CAL64013.1| transposase A [Staphylococcus warneri]
          Length = 361

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 108/245 (44%), Gaps = 36/245 (14%)

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           + T    ++++    K  D S +      K FL ++ K + + + NIL +R  KK   L 
Sbjct: 112 AVTSFLEYLNRTENFKAIDMSKEARGRNFKGFLHHISKGR-SYKKNILKLRVKKK---LV 167

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDD 184
           + L   Q   +++    HT         R+  ++ L+Y  GLRI EALSL  ++I   D+
Sbjct: 168 QVLEHGQVKAIIEAC--HTK--------RDKLLIMLMYEGGLRIGEALSLRIEDISTWDN 217

Query: 185 QSTLRIQGKGDKIRIVPLLP----SVRKAILEYY----------DLCPFDLNLNIQLPLF 230
           Q  +R +   +    + L       V K ++  Y          DL    + +N++   F
Sbjct: 218 QINIRPRDHNENGAYIKLKKERTIDVSKELMALYTDYLVHEYGEDLDHDYIFINLKDSYF 277

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
               G PL        IR+L +  G+    TAH LRH+ AT L+ +G D   +Q  LGH 
Sbjct: 278 ----GHPLKYQSVLDLIRRLGKRTGITF--TAHILRHTHATELIRSGWDAAYVQKRLGHA 331

Query: 291 RLSTT 295
            + TT
Sbjct: 332 HVQTT 336


>gi|227544652|ref|ZP_03974701.1| phage integrase/recombinase [Lactobacillus reuteri CF48-3A]
 gi|300909431|ref|ZP_07126892.1| phage integrase family integrase/recombinase [Lactobacillus reuteri
           SD2112]
 gi|227185377|gb|EEI65448.1| phage integrase/recombinase [Lactobacillus reuteri CF48-3A]
 gi|300893296|gb|EFK86655.1| phage integrase family integrase/recombinase [Lactobacillus reuteri
           SD2112]
          Length = 322

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 128/286 (44%), Gaps = 23/286 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L   ++E G S+ T+  Y+   +    +L  + + KIT + +R      +  +   R 
Sbjct: 50  DYLAAKQVE-GCSEKTINYYQATLKMMFSYLGKHVQ-KITTEDLRDY----LGNYQQSRN 103

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           + ++   +++R  S   SF  +L+   +  +S +  +  +K S  +    +++    L D
Sbjct: 104 SSRVTIDNIRRIFS---SFFSWLEDEDVIIKSPVRRIHKVKSSAKVKDTYSDEDLERLRD 160

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
               H + E      R+ A++ +L   G+RI E + L   +I  D+    + GKG+K RI
Sbjct: 161 ----HCNSE------RDVAMIDILASTGMRIGELVHLNQNDINFDERECVVLGKGNKQRI 210

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           V    +  K  L+ Y     D N  + + L    +   +N G+  R ++ L +  G+   
Sbjct: 211 V-YFDARSKIHLQNYLAKRKDANSALFVSLHVPHQRMSIN-GIENR-LKNLGKRAGIA-K 266

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
              H  R + AT+ +  G  +  +Q +LGH R+ TT  Y  V   N
Sbjct: 267 VYPHKFRRTLATNAIDKGMPIEQVQKLLGHERIDTTLHYAMVKQSN 312


>gi|229829078|ref|ZP_04455147.1| hypothetical protein GCWU000342_01163 [Shuttleworthia satelles DSM
           14600]
 gi|229792241|gb|EEP28355.1| hypothetical protein GCWU000342_01163 [Shuttleworthia satelles DSM
           14600]
          Length = 360

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 107/230 (46%), Gaps = 20/230 (8%)

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEK-----QALT 136
           G +++ R +S ++   KY    K  +E  + ++ M  LKK  ++ R  N +      A+T
Sbjct: 107 GKKAIARKMSALRGMYKYQLIHKHISEDPAALVAMPRLKKDKNIVRMNNYEVQDILNAIT 166

Query: 137 LVDNVLLHTSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           + +  +  +  + K+      R+ AIL +L   G+R+SE   L   ++   +++L I  K
Sbjct: 167 IGNQQM--SDRQRKYCLKTQQRDLAILTILLNTGMRVSECRGLDLNDVNLIENSLVIVRK 224

Query: 194 GDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           G    I+     V   + +Y +     + P + +   Q  LF  ++GK ++    ++ ++
Sbjct: 225 GGGQDIIYFGKPVHSTLSDYIEGERQTISPLEGH---QQALFYSLQGKRISVDAIEKLVK 281

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +  R        T H LR ++ T L    GD+R +  +LGH  ++TT  Y
Sbjct: 282 KYARIAVPGKHITPHKLRSTYGTALYRETGDIRLVADVLGHENINTTIDY 331


>gi|150402804|ref|YP_001330098.1| phage integrase family protein [Methanococcus maripaludis C7]
 gi|150033834|gb|ABR65947.1| phage integrase family protein [Methanococcus maripaludis C7]
          Length = 291

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 74/147 (50%), Gaps = 12/147 (8%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFD 220
            L   GLR  E L+L   ++  D   + ++G KGDK R VP+   +      Y  L  ++
Sbjct: 138 FLVQTGLRRGEFLNLKFIDVDLDDRIIHVKGGKGDKYRFVPISDEL------YMYLKRWN 191

Query: 221 LNLNIQLPL----FRGIRGKPLNPGVFQRYIRQLRRYL-GLPLSTTAHTLRHSFATHLLS 275
               ++ P+    F   +GK  +  ++  +   + R +  L +  T H LRH+FAT+ ++
Sbjct: 192 YERALRYPVDDSYFVSKKGKRQSNKIYASFSEYIDRAVPNLHIRVTPHILRHTFATNCIN 251

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVN 302
              DL+++  ILGH  ++TT IY + N
Sbjct: 252 KKMDLKTLSLILGHEDIATTSIYLHKN 278


>gi|149913568|ref|ZP_01902101.1| Integrase [Roseobacter sp. AzwK-3b]
 gi|149812688|gb|EDM72517.1| Integrase [Roseobacter sp. AzwK-3b]
          Length = 196

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 13/158 (8%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-------IQGKGDKIRIVPLLPSVR 207
           R+  I+   +  GLR  E  +L   ++ D   ++R        Q KG + R V +   +R
Sbjct: 35  RDETIVLFSFYAGLRAKEIAALKRGDVFDKAGSVREQFILSAAQSKGGRTRTVYVNQRLR 94

Query: 208 KAILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           +A+ EY       LNL +   PLF   +G   +     +    + R +GL    ++H+ R
Sbjct: 95  RALAEY----AAGLNLSDPNRPLFESQKGGHFSANTMCQLFLDIYRAVGLK-DASSHSGR 149

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            ++ T L + G  +R +  + GH  +STTQ Y +VN++
Sbjct: 150 RTYITRLANKGVGVRLLAELAGHSHISTTQRYIDVNAE 187


>gi|258438229|ref|ZP_05689513.1| transposase A [Staphylococcus aureus A9299]
 gi|257848273|gb|EEV72264.1| transposase A [Staphylococcus aureus A9299]
          Length = 361

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 108/245 (44%), Gaps = 36/245 (14%)

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           + T    ++++    K  D S +      K FL ++ K + + + NIL +R  KK   L 
Sbjct: 112 AVTSFLEYLNRTENFKAIDMSKEARGRNFKGFLHHISKGR-SYKKNILKLRVKKK---LV 167

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDD 184
           + L   Q   +++    HT         R+  ++ L+Y  GLRI EALSL  ++I   D+
Sbjct: 168 QVLEHGQVKAIIEAC--HTK--------RDKLLIMLMYEGGLRIGEALSLRIEDISTWDN 217

Query: 185 QSTLRIQGKGDKIRIVPLLP----SVRKAILEYY----------DLCPFDLNLNIQLPLF 230
           Q  +R +   +    + L       V K ++  Y          DL    + +N++   F
Sbjct: 218 QINIRPRDHNENGAYIKLKKERTIDVSKELMALYTDYLVHEYGEDLDHDYIFINLKDSYF 277

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
               G PL        IR+L +  G+    TAH LRH+ AT L+ +G D   +Q  LGH 
Sbjct: 278 ----GHPLKYQSVLDLIRRLGKRTGITF--TAHILRHTHATELIRSGWDAAYVQKRLGHA 331

Query: 291 RLSTT 295
            + TT
Sbjct: 332 HVQTT 336


>gi|163759225|ref|ZP_02166311.1| hypothetical protein HPDFL43_05655 [Hoeflea phototrophica DFL-43]
 gi|162283629|gb|EDQ33914.1| hypothetical protein HPDFL43_05655 [Hoeflea phototrophica DFL-43]
          Length = 366

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 68/147 (46%), Gaps = 5/147 (3%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           +L GC  R++E L L  + I      + I GKGDK R VPL  ++R  +           
Sbjct: 193 MLSGC--RMAECLGLEWRLIDWHGGYIVITGKGDKTRHVPLSDALRALLWPLPRAHARVF 250

Query: 222 NLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
              I+       RG   P+       +  ++ +  G+ +    H LRH+FAT  L   GD
Sbjct: 251 THRIRRGSIHHKRGDIAPVEEEALNSHFARVCKKAGV-IGFRFHDLRHTFATRFLRATGD 309

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +R++Q ILGH  + TT  Y +V + + 
Sbjct: 310 MRALQLILGHSSIETTMRYAHVTAADA 336


>gi|227889876|ref|ZP_04007681.1| phage integrase/recombinase [Lactobacillus johnsonii ATCC 33200]
 gi|227849567|gb|EEJ59653.1| phage integrase/recombinase [Lactobacillus johnsonii ATCC 33200]
          Length = 322

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 117/281 (41%), Gaps = 32/281 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF-ISKRRTQKIGDRSL 88
           G S  T++ Y     Q L            ++ +R+++  E+R + +  ++    G  ++
Sbjct: 59  GCSDRTIKYYRVTVEQLL---------NKVVRPVRRVTTEEMREYLVDYQKINNCGKTTV 109

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
                 I SF  +L++     E  IL         S  R +++ +A  LV NV+     E
Sbjct: 110 DNIRRNISSFFSWLEE-----EDYILK--------SPMRRIHKIRAEKLVKNVITDEDIE 156

Query: 149 TKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            K  D     R+ A++ LLY  G+R+ E + L   +I   +    + GKGDK R V    
Sbjct: 157 -KLRDGCSCLRDVAMIDLLYSTGIRVGELVRLNKTDINFSERECVVFGKGDKERRVYFDA 215

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             +  ++ Y      D N  + + L R      L     +  +RQL R L L      H 
Sbjct: 216 KSKVHLINYLK-SRTDDNPALFVSLDRP--NDRLKISGVEIRLRQLGRKLHLD-RIHPHK 271

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            R S AT  +  G  +  +Q ILGH ++ TT  Y  VN  N
Sbjct: 272 FRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVNQNN 312


>gi|89147561|gb|ABD62640.1| integrase [uncultured bacterium]
 gi|89147622|gb|ABD62670.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 38/60 (63%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           V Q  +R+      L    T H LRHSFATHLL +G D+R++Q +L H  +STT IYT+V
Sbjct: 103 VIQNAVRRAAELSQLTKRVTVHALRHSFATHLLESGYDIRTVQELLSHRHVSTTMIYTHV 162


>gi|89147650|gb|ABD62684.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            QR ++   R  G+      HTLRH+FATHLL  G ++R +Q ++GH  + TT IYT+V
Sbjct: 104 LQRTVKMATRLAGIAKPVGCHTLRHAFATHLLEAGHNIRVVQELMGHKDVETTMIYTHV 162


>gi|20385054|gb|AAM21168.1|AF254788_3 putative integrase/recombinase Xer [Geobacillus stearothermophilus]
          Length = 304

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 129/288 (44%), Gaps = 29/288 (10%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           E+G S  T+ SY  D   F   L     + +T   IR+     I+  ++    + +   +
Sbjct: 11  EKGASPNTIISYTNDLNIFFQDLHIRPSDYVTPADIRKW----IQQMLNPAEGKPLAIST 66

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA---LNEKQALTLVDNVLLH 144
           + R L+ ++SF  +  K     ++ + ++++LK ++        L E++   L+   +  
Sbjct: 67  INRRLNSLRSFYAWAVKHHKIEQNPMKDIQDLKSADEDTEKIMWLTEEEFEDLLQR-MRK 125

Query: 145 TSHETKWIDA-----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              +++ +D      R+ A++YLL   GLR+ E  +L   ++  +   +RI GKG K+R 
Sbjct: 126 KPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMKRIRIVGKGMKVRT 185

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-------LFRGIRGKPLNPGVFQRYIRQLRR 252
           VP + ++  A LE  D   F   +  + P       +F   R     P    R I+++  
Sbjct: 186 VP-ISNILLAELE--DWLKFRAEMAKKKPHVAESPYVFYSQRS----PKFSVRGIQRMIE 238

Query: 253 YLGLP-LSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLSTTQIY 298
              LP    T H  RH+F   +L +   D+  ++ + GH  ++TT  Y
Sbjct: 239 SYSLPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRY 286


>gi|89147363|gb|ABD62542.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 40/60 (66%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + Q  +++  +  G+    + HT RHSFATHL+  G D+R++Q +LGH  +STT IYT+V
Sbjct: 103 MLQAEVQKAVKRAGIAKRVSCHTFRHSFATHLIEVGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|255034767|ref|YP_003085388.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254947523|gb|ACT92223.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 430

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 123/281 (43%), Gaps = 32/281 (11%)

Query: 32  SKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           S+ TL+ +    R+   F+ F Y  + I +  I Q    E   +++    + + + + K+
Sbjct: 144 SEGTLRHWRSTKRKVEAFIRFRYQRKDIEMTEIDQCFAEEFYDYLTLHLDEPLSEVTAKK 203

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNEKQALTLVDNVLLHTSHE 148
            +   +  +K   K+K+   SN L        N   LP  L E +A+           H+
Sbjct: 204 LVKWTRQIVKTGVKKKVIP-SNPLEGFVCSGGNKEVLPLELFEVEAI-----------HK 251

Query: 149 TKW-IDARNSAILYLLYGC--GLRISEALSLTPQNIMD-----DQSTLRIQGKGDKIRIV 200
            +  ID  +      ++ C  G    +  +L+P+NI+      ++  ++ +GK +   +V
Sbjct: 252 KQIDIDRISEVRDAFIFQCFTGFAYQDMYNLSPENIVKVGRAGEKWLIKDRGKTEVTEMV 311

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+LP V+  +++ Y   P+    N  +P+    R        +  Y+++L    G+    
Sbjct: 312 PILPIVQD-LIDKYQSHPYCRVNNRLIPVNSNFR--------YNVYLKELAVICGIKRPL 362

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             H  RH+FA  +L+NG  L  +  +LGH  + TTQ Y  V
Sbjct: 363 NTHLARHTFADMMLNNGVPLEDVGKMLGHRNIRTTQRYARV 403


>gi|223369818|gb|ACM88778.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 42/69 (60%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           IR   L+    Q+ IR       +    ++HT RH FATHLL +G D+R++Q +LGH  +
Sbjct: 94  IRRHHLHETRVQKAIRSAALASAIHKRISSHTFRHCFATHLLESGYDIRTVQELLGHADV 153

Query: 293 STTQIYTNV 301
           STT IYT+V
Sbjct: 154 STTMIYTHV 162


>gi|218559583|ref|YP_002392496.1| Integrase [Escherichia coli S88]
 gi|218366352|emb|CAR04103.1| Integrase [Escherichia coli S88]
          Length = 339

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 24/153 (15%)

Query: 153 DARNSAILYLLYGC---GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           D+++S++L +   C   G R SEA +L    +   + T   + KG K R VP+       
Sbjct: 190 DSQSSSLLLIAKICLATGARWSEAENLQSHQVSKYRITY-TKTKGKKNRTVPI------- 241

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
                       +L  +LP  RG    P     F+R ++  R  L LP     H LRH+F
Sbjct: 242 ----------SKDLYEELPKNRGKLFTPCRK-AFERAVK--RAGLELPEGQCTHVLRHTF 288

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           A+H + NGG++  ++ ILGH  +  T IY + +
Sbjct: 289 ASHFMMNGGNILVLRDILGHADIKMTMIYAHFS 321


>gi|268611397|ref|ZP_06145124.1| phage integrase family site specific recombinase [Ruminococcus
           flavefaciens FD-1]
          Length = 357

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 108/249 (43%), Gaps = 29/249 (11%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           I +++   I  FIS +    + D++    LS +K  +K+ +      ++ I ++      
Sbjct: 101 ISEMNSKRIEGFISGK--TDLSDKTRTDILSMLKQIMKFAEHSGFYVDNTISDL------ 152

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            S+ R++NE + LTL + + L     +   D+  +  +YL    GLRI E  +L   +I 
Sbjct: 153 -SVRRSVNEIRVLTLQEQIRLENYLLS--CDSLITTGIYLTLYTGLRIGELCALKRSDID 209

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP----------------FDLNLNIQ 226
            D   + I G   ++RI  ++   +  I E    C                 +  N+   
Sbjct: 210 LDSGMIHISGTMQRLRIDTMISRTQVMITEPKSKCSIRDIPIPKAILNVCRMYYYNMPDH 269

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
             L  G     + P +   + ++  +   L  +   HTLRH+FAT  +  G D++S+  I
Sbjct: 270 CFLLTGDE-TYIEPRLLSYHFKKCTKACDLE-NIHYHTLRHTFATRCIERGVDVKSLSEI 327

Query: 287 LGHFRLSTT 295
           LGH+ ++ T
Sbjct: 328 LGHYDVNVT 336


>gi|161523680|ref|YP_001578692.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189351551|ref|YP_001947179.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
 gi|160341109|gb|ABX14195.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189335573|dbj|BAG44643.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
          Length = 188

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 11/155 (7%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-------QGKGDKIRIVPLLPSVR 207
           RN A++ L +  G+R+ E  +L   +++D   +++        Q KG   R V L   +R
Sbjct: 27  RNRAMVLLTHWAGMRVGEVAALLVGDVLDTDGSIKSEIRLAPEQTKGRHARTVFLGQKLR 86

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + +  Y  +   + N  +  PLF   +          +Y   L +  G+    ++H+ R 
Sbjct: 87  RELAAY--VASLN-NPTLDGPLFYTQKRAGFTANTLCQYFHWLYKEAGIH-GASSHSGRR 142

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           SF T+L S G  +R + S+ GH  +STTQ Y +VN
Sbjct: 143 SFITNLASKGVGVRVLMSLAGHRDISTTQRYIDVN 177


>gi|89147450|gb|ABD62585.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 39/59 (66%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            QR +++  +  G+      HT RHSFAT LL  G D+R+IQ +LGH  ++TT+IYT+V
Sbjct: 104 IQRQVKKAIKAQGINKYCHCHTFRHSFATQLLQKGHDIRTIQELLGHSDVATTEIYTHV 162


>gi|89147452|gb|ABD62586.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 35/47 (74%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           G+    + H LRHSFATHLL +G D+R++Q +LGH  + TT+IYT+V
Sbjct: 116 GIEKRVSCHVLRHSFATHLLESGRDIRTVQELLGHTDVKTTEIYTHV 162


>gi|251780937|ref|ZP_04823857.1| DNA integration/recombination protein [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243085252|gb|EES51142.1| DNA integration/recombination protein [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 338

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 128/296 (43%), Gaps = 39/296 (13%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL------------------SYTE 70
           + LS  T++SY     Q L+  + Y EE+  I+ I ++                  SYT 
Sbjct: 25  KNLSLKTIKSYH----QCLMLFSKYLEEEKDIKDITKVNKNIVEEYISFTKERGKYSYTS 80

Query: 71  -----IRAFISKRRT--QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
                I+A + KR    +++ + +L   L  IK+F  YL++  I   S I   + +K   
Sbjct: 81  TIEGSIKANLHKRTDIGKEVSNSTLNNYLRNIKAFATYLEENNIVKNSRIHECKFIKTER 140

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
                 N++Q   +    L+     TK+ + R+  I+ L++  G+R+ E L LT  ++  
Sbjct: 141 R-----NKEQLTDVEYQKLVKCLDCTKFHEFRDYTIINLIFDTGMRLGETLHLTANDVDL 195

Query: 184 DQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
            + T+ I     KG K R+V    ++ K +  +           +  P  R   G   NP
Sbjct: 196 LRRTILIPADLTKGRKDRVVFFSMNMAKLLQRWLKFKDTMQETELLFPTQR-TNGIISNP 254

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
             F+R  R   +   +  + T H LR++F+   L +GG L  +  ILGH  +  T+
Sbjct: 255 N-FERNFRGYLKKSDIHKNITPHGLRNNFSRRFLLSGGSLMILSKILGHSSVKVTE 309


>gi|288556894|ref|YP_003428829.1| hypothetical protein BpOF4_19490 [Bacillus pseudofirmus OF4]
 gi|288548054|gb|ADC51937.1| hypothetical protein BpOF4_19490 [Bacillus pseudofirmus OF4]
          Length = 329

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 134/302 (44%), Gaps = 35/302 (11%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS---KRRTQKIG 84
           E+G  + T++ Y  D   FL ++  + +  +TI+    LS  E+  F     K R+ KI 
Sbjct: 18  EKGRKEATIKRYRYDLLDFLEWMKDHNK-PLTIEGFDSLSIDEMALFFDELIKHRSYKI- 75

Query: 85  DRSLKRSLSGIKSFLK-YLKKRKITTESNILNMRNLKKSNSLPR-----ALNEKQALTLV 138
            R+ +R  S I+   + Y+KK ++ T + +   +       L R     +    Q  ++V
Sbjct: 76  -RTTRRIYSVIQQLARFYIKKGQLQTHAILFYTQPELIQTPLQRKEWVSSAEADQLFSVV 134

Query: 139 DNVLLHTSHETK---WIDARNSAILYLL--YGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
            +    + ++ +    + ARN  +L+LL  YGC L   EA SLT ++I  +++ +R+Q +
Sbjct: 135 RSYEGLSENQMRARPLLIARNECLLHLLLHYGCSLH--EAASLTTRDIRFERNEIRVQSE 192

Query: 194 GDKIRIVPLLPSVRKAILEY------------YDLCPFDLNLNIQLPLFRGI----RGKP 237
               RIVP+    ++    Y            +   PF +  + Q   FR      + K 
Sbjct: 193 KGISRIVPITHEHKQLAYNYLKTIPEAVRPKLFSDEPFFVAFDFQRGTFRWSYEEDQPKQ 252

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L     Q+ IRQ     GL    +A  LRH++    L NG D  S+Q  L    L + + 
Sbjct: 253 LTIISIQKMIRQEVERAGLRKGISAQHLRHTYILRKLLNGDDAISLQQQLSFKSLLSLKR 312

Query: 298 YT 299
           YT
Sbjct: 313 YT 314


>gi|260662141|ref|ZP_05863037.1| integrase [Lactobacillus fermentum 28-3-CHN]
 gi|260553524|gb|EEX26416.1| integrase [Lactobacillus fermentum 28-3-CHN]
          Length = 292

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 122/281 (43%), Gaps = 19/281 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q WL     ++G +KLT+ SY  D R    +L   T   +T    +Q+    + A++   
Sbjct: 16  QEWL----TKKGGAKLTIASYLTDLRDTAAYL---TSRGVT--NWQQVDRATLTAYLQSL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     +++R +S ++ F  YL+         +  ++  +     P  L  ++A  L 
Sbjct: 67  NDKGRRTTTIQRRISSLRRFYVYLQVTGQVNHDPVALLKAKQTPRLAPVGLTPQEADLLP 126

Query: 139 DNVLLHTSHETKWID-ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           D+V        K +   RN A++ LL   G R +E   L   + +D +  +   G+  + 
Sbjct: 127 DHV------PGKGVARERNRALVALLVATGARANELRDLQTGD-LDLELGVVYLGQSSR- 178

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VPL     +  L  Y     D +   +  +F   RG+PL+       +    +   + 
Sbjct: 179 RLVPLNEQA-QTYLTTYLTARADQSATDEGYVFLNNRGQPLSRQSIWEIVNATGQRANIE 237

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            + T   +R  FA  LL++G DL  +Q ++GH  + TTQ+Y
Sbjct: 238 GAVTPQRVRDGFAYRLLAHGADLSLVQQLMGHQSILTTQVY 278


>gi|154000932|gb|ABS57034.1| integrase [uncultured bacterium]
          Length = 158

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 39/60 (65%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            FQR  ++     G+    T HTLRHS AT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 99  TFQRAFKRAVEQAGITKPATPHTLRHSSATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|227497442|ref|ZP_03927674.1| phage integrase [Actinomyces urogenitalis DSM 15434]
 gi|226833118|gb|EEH65501.1| phage integrase [Actinomyces urogenitalis DSM 15434]
          Length = 294

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 70/154 (45%), Gaps = 16/154 (10%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQ--STLRIQGKGDKIRIVPLLPSVRKAI 210
           DAR + IL      GLR +E  ++  ++++     + L + GKG K R+VPL P +   +
Sbjct: 120 DARQTLILRCAAEAGLRRAEIAAIHARDLLQTSGGTVLAVHGKGSKQRLVPLAPGLAALL 179

Query: 211 LEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
            +  +  P    L N Q        G  L+       +R L     +P   T H LRH F
Sbjct: 180 TDATNADPHGYALPNGQ--------GSHLSAERVADSVRHL-----IPSPYTLHALRHRF 226

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           AT       DL S+Q +LGH   +TTQ Y   ++
Sbjct: 227 ATTAYDATRDLFSVQRLLGHASPTTTQRYVATDA 260


>gi|311695984|gb|ADP98857.1| phage integrase family protein [marine bacterium HP15]
          Length = 327

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 29/142 (20%)

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
             G R  EA +L  +++ + + T  +  K  K R VP                       
Sbjct: 195 ATGARWGEAENLQLRHVQEGKLTF-VNTKSGKSRSVP----------------------- 230

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG-----LPLSTTAHTLRHSFATHLLSNGGD 279
           +   LF  IR      G F   +   RR L      LP    AH LRH+FA+H L NGGD
Sbjct: 231 VSKELFEEIRKHLKEHGCFSFSLSAFRRALDKSGITLPPGQAAHVLRHTFASHFLMNGGD 290

Query: 280 LRSIQSILGHFRLSTTQIYTNV 301
           + ++Q ILGH  +S T  Y+++
Sbjct: 291 IVTLQKILGHSHISMTLRYSHL 312


>gi|229092872|ref|ZP_04224006.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-42]
 gi|228690494|gb|EEL44277.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-42]
          Length = 54

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 39/55 (70%), Gaps = 4/55 (7%)

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +     +  +Y + HP
Sbjct: 2   LRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER----LRSVYMKHHP 52


>gi|109392319|ref|YP_655549.1| gp32 [Mycobacterium phage Halo]
 gi|189043119|ref|YP_001936060.1| integrase [Mycobacterium phage BPs]
 gi|239590043|ref|YP_002941890.1| gp32 [Mycobacterium phage Angel]
 gi|91980569|gb|ABE67289.1| integrase [Mycobacterium phage Halo]
 gi|171909234|gb|ACB58191.1| integrase [Mycobacterium phage BPs]
 gi|238890575|gb|ACR77564.1| gp32 [Mycobacterium phage Angel]
 gi|255927876|gb|ACU41496.1| gp32 [Mycobacterium phage Hope]
          Length = 398

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 75/171 (43%), Gaps = 21/171 (12%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVP----LLPSV 206
           DAR   +L L    GLR +E   ++  ++ +  D   L + GKG K R +P    L   +
Sbjct: 179 DARVMLMLRLAAELGLRRAEVAQVSTSDLTESFDGYVLVVHGKGGKNRTLPVSDELAELI 238

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG--LPLSTTAHT 264
            +    + D  P    L      F G     L+P       R + R  G  LP   T H 
Sbjct: 239 ARGAAGHTDGAPATGYL------FPGDDAGHLSP-------RWVGRLCGDALPDGWTMHK 285

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           LRH FAT       +LR++Q++LGH  ++TT+IYT V        MM   D
Sbjct: 286 LRHRFATRAYRGSRNLRAVQTMLGHASVATTEIYTAVEDAEVRAAMMAAGD 336


>gi|242241952|ref|ZP_04796397.1| integrase [Staphylococcus epidermidis W23144]
 gi|242234583|gb|EES36895.1| integrase [Staphylococcus epidermidis W23144]
          Length = 405

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 23/167 (13%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQG------KGDKI------------RIVPLLPS--- 205
           G+RI E L++ P NI  D+ TL I G      +G+ +            R + L      
Sbjct: 230 GMRIGELLAIQPNNIDFDKKTLEIDGTIHWRNEGNAVGFKDTTKTESSYRTISLTTRSCD 289

Query: 206 -VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            +RK +LE      ++     +  +F   RG P++     R ++Q    +G+    T+HT
Sbjct: 290 ILRKVMLENKKAIQWESMYQDRGFIFTNYRGNPMSLSTINRNMQQSANNVGIRKHITSHT 349

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           +RHS  + L   G  L++I   +GH    TT QIY++V  +   D M
Sbjct: 350 MRHSHISLLSQLGISLKAIMERVGHTDHKTTLQIYSHVTEQMDKDMM 396


>gi|111025268|ref|YP_707688.1| integrase/recombinase [Rhodococcus jostii RHA1]
 gi|110824247|gb|ABG99530.1| probable integrase/recombinase [Rhodococcus jostii RHA1]
          Length = 439

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 126/314 (40%), Gaps = 39/314 (12%)

Query: 14  LLKERQNWLQN-LEIERGLSKLTLQS----------YECDTRQFLIFLAFYTEEKITIQT 62
            LK  ++W    L  +R  S  T++S          + CDT    +       +KIT   
Sbjct: 8   FLKHLRDWFTVFLPRQRAASPHTIESARRAWNMLLSHVCDTGGIPV-------DKITFPM 60

Query: 63  IRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN--- 118
           + +   T    F+ + R ++     +  + L+ I+SF KY    + T   ++ ++     
Sbjct: 61  LDRACIT---GFLEQTRAERNWTAATYNQRLACIRSFFKYAATAEPTLAIHLADLAGIPL 117

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           +K   + P +   +QA+      LL     T     R+   + L+Y    R +E LS   
Sbjct: 118 MKAPATKPVSHMSQQAI----KALLAQPDPTIRTGLRDQFFMILMYDTAARDAEMLSAAI 173

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI---RG 235
            ++   + T+ + GKG K R +P+          Y     F  +  +  PLF  I   R 
Sbjct: 174 GDLDATRLTIDLLGKGSKPRRIPITKETAAHYRRY--TAAFHPDPQLGDPLFYTIHSHRK 231

Query: 236 KPLNPGVFQRYIRQL-----RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
           + ++     R IRQ      R+   +P     H LRHS A HL   G  L  +   LGH 
Sbjct: 232 RRMSDDNAARIIRQHAQAAHRKCAEVPAGAHPHMLRHSRAMHLYQAGMPLALLTEWLGHA 291

Query: 291 RLSTTQIYTNVNSK 304
              TT IY + +++
Sbjct: 292 DPETTLIYAHADTE 305


>gi|13474989|ref|NP_106548.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025735|dbj|BAB52334.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 82

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/49 (59%), Positives = 35/49 (71%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           G+    T HTLRHSFATHLL NG D+R IQ +LGH  LS+T  YT V++
Sbjct: 13  GIDKRVTVHTLRHSFATHLLENGTDIRIIQVLLGHNNLSSTARYTKVSN 61


>gi|325520794|gb|EGC99805.1| site-specific tyrosine recombinase XerD [Burkholderia sp. TJI49]
          Length = 239

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 92/213 (43%), Gaps = 15/213 (7%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E GL++ TL +Y  D   F  +LA   +  + +        T +  +I+ R   K  
Sbjct: 35  LWLEHGLARNTLDAYRRDLVLFSRWLAATHDAPLDLA-----DETMVTGYIAARSDGKA- 88

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S  R LS  + +  +  +    +    L + + K++   P  L+E Q   L+    + 
Sbjct: 89  -TSSNRRLSVFRRYYGWAVREHRASADPTLRITSAKQAARFPSTLSEAQVEALLGAPDIA 147

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           T      +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+VP   
Sbjct: 148 TP-----LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVP-FG 201

Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRG 235
            V    +E Y  D  P  L       LF   RG
Sbjct: 202 EVAHGWIERYLRDARPALLGARAADALFVTARG 234


>gi|154000904|gb|ABS57020.1| integrase [uncultured bacterium]
          Length = 158

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 39/60 (65%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            FQR  ++     G+    T HTLRHS AT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 99  TFQRAFKRAVEQAGITKPATPHTLRHSSATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|317153308|ref|YP_004121356.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316943559|gb|ADU62610.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 304

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 95/217 (43%), Gaps = 9/217 (4%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL--NEKQALTLVDNVLLH 144
           SL R  + +++F  +     I  ++   ++R  +    LP  L   EK+ L      L  
Sbjct: 83  SLHRMKAALRAFFAWAIDVGIVDDNPARSIRMHRLPRKLPVFLTVGEKKRL------LKE 136

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
               T +   R+ A++ +L G G+R+ E  +L   +I  D   LR+  KG+  ++  +  
Sbjct: 137 LKGRTDFPAFRDRAMIEVLLGTGIRLGELAALDMDDIDLDAKHLRVWAKGNVPQVKFIKT 196

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            +R  +  Y           ++  LF   R   L        +    R  G+    T H 
Sbjct: 197 DLRTLLRRYLAERRRRGRPEME-ALFLSNRDSRLCQRQIANRLAHWLRKAGIEKELTPHG 255

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +RH+FATHL     DL  +Q  LGH  +STTQIYT++
Sbjct: 256 MRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHL 292


>gi|303243919|ref|ZP_07330259.1| integrase family protein [Methanothermococcus okinawensis IH1]
 gi|302485855|gb|EFL48779.1| integrase family protein [Methanothermococcus okinawensis IH1]
          Length = 291

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 125/292 (42%), Gaps = 54/292 (18%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L+     SK TL+ Y      F+ F    + + IT+             F       K+ 
Sbjct: 13  LDFHSSKSKETLKRYRSSLHIFMEFFPDKSWDDITVDDA---------IFFYNSYLSKVS 63

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLK-KSNSLPRALNEKQALTLVDNVL 142
             ++ + L  +  FL +  + K   ++NI L +++LK ++N    +LNE++   L+ N+ 
Sbjct: 64  KDTVVKRLKDVSRFLDWCVEYKYILQNNIKLYVKSLKLQNNGRDISLNEEEVNILLSNI- 122

Query: 143 LHTSHETKWIDARNSAILYLLYG-----CGLRISEALSLTPQNI-MDDQSTLRIQGKGDK 196
                            LY +Y       G+RISE  ++T  +I ++D+      GKG+K
Sbjct: 123 --------------KDYLYYVYTLFILTTGVRISEFKNITMNDIHLEDRLVYIRGGKGNK 168

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLN-------LNIQLPLFRGIRGKPLNPG---VFQRY 246
            R+V +            +L PF  N       LN +        G  L+ G    ++ Y
Sbjct: 169 DRMVFICD----------ELYPFLSNYIKHREMLNPKTDKLVNKNGYKLSEGHICEYRDY 218

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +R++ +  GL +  T H LRH+F T    +G +L+ +  ++GH  ++ T  Y
Sbjct: 219 LREVSK--GLSVKVTPHVLRHTFGTLACKHGMNLQVLSKLMGHSSMAITSKY 268


>gi|326774393|ref|ZP_08233658.1| integrase family protein [Streptomyces cf. griseus XylebKG-1]
 gi|326654726|gb|EGE39572.1| integrase family protein [Streptomyces cf. griseus XylebKG-1]
          Length = 387

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 138/316 (43%), Gaps = 41/316 (12%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEE--KITIQTIRQLSYTEIR---------AFISK 77
           RG S  T+Q Y  D R F ++L     +  ++ ++ + Q  +  +R          F+  
Sbjct: 56  RGASPNTVQGYAYDLRDFFVWLGQVGLDFRRVRLEVVAQF-FDWLRRPKLARAPEVFVLP 114

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q + + +L+R  + + SF ++  +R  +  + + N+   + + S    L   Q    
Sbjct: 115 GVGQALENTTLQRKRAALASFYRFHARRDESVPALLGNLLARQPTGSYTPMLAHTQRGGE 174

Query: 138 VD--NVLLH---------TSHETKWIDA-----RNSAILYLLYGCGLRISEALSLTPQNI 181
           V+   + +H         TS ET+ + +     R+  ++ LL   GLRISEAL L   ++
Sbjct: 175 VEYSPIRIHAHRKPPRTLTSDETQRLMSACNRRRDRFLIALLDEAGLRISEALGLRHADL 234

Query: 182 MDDQSTLRI----------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LF 230
              +  + +          + KG K RI+P+ P +      Y +     L+ +     LF
Sbjct: 235 NLRKGEVHVVPRENNANQARVKGMKGRIIPVRPELFDRYAAYMESEYGTLDCDFVFANLF 294

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
           R   G P+        + +L++  G+    + H  RH++AT LL     +  +  +LGH 
Sbjct: 295 RAPIGSPMTRANVNELVERLQKRTGI-THFSPHVCRHTYATRLLRAEVPIEVVAELLGHA 353

Query: 291 RLSTT-QIYTNVNSKN 305
              TT +IY++++ ++
Sbjct: 354 SPQTTAEIYSHLDVED 369


>gi|295134062|ref|YP_003584738.1| transposase [Zunongwangia profunda SM-A87]
 gi|294982077|gb|ADF52542.1| putative transposase [Zunongwangia profunda SM-A87]
          Length = 410

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 75/156 (48%), Gaps = 16/156 (10%)

Query: 162 LLYGC--GLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD 215
            L+ C  GL   +   LT  NI MD      I+ +  K +    +PLL   R  IL+ Y 
Sbjct: 252 FLFSCYTGLSYIDITKLTMDNIGMDFDGNQWIETERQKTKTALKIPLLNQARD-ILKRYQ 310

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
             P  ++    LP +     + LN      Y++++  + G+    T H  RH+FAT + L
Sbjct: 311 DHPKTVHSKTLLPRYSN---QKLNS-----YLKEIADFCGIKKHLTFHIARHTFATTITL 362

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           +NG  + ++  +LGH +L+TTQIY  V  K   D M
Sbjct: 363 TNGVPIETVSKLLGHTKLATTQIYARVVDKKVKDDM 398


>gi|330989733|gb|EGH87836.1| Orf28 [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 132

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 9/117 (7%)

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGV---- 242
           LR+ GKG KIR +PL P   + I  Y +    D+  +    PLFR +RG     G+    
Sbjct: 2   LRVHGKGSKIRFLPLHPVAAERIYAYLER---DVERDAAPGPLFRSMRGTTTGAGITANG 58

Query: 243 FQRYIRQLRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
               + Q  R  G+ +     H LR + AT+ L +  D+  +Q  LGH  +STT++Y
Sbjct: 59  LYTIVAQWARVAGIEVERLGVHGLRATAATNALEHDADIAKVQMWLGHANISTTRLY 115


>gi|160886776|ref|ZP_02067779.1| hypothetical protein BACOVA_04789 [Bacteroides ovatus ATCC 8483]
 gi|298383599|ref|ZP_06993160.1| tyrosine type site-specific recombinase [Bacteroides sp. 1_1_14]
 gi|156107187|gb|EDO08932.1| hypothetical protein BACOVA_04789 [Bacteroides ovatus ATCC 8483]
 gi|298263203|gb|EFI06066.1| tyrosine type site-specific recombinase [Bacteroides sp. 1_1_14]
          Length = 381

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 21/218 (9%)

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R+L+G  +     KK K    + +     ++K  S+   +  ++   L+D  + H  +E 
Sbjct: 168 RALNGALNSAVRKKKMKANPFNELEKSEKIRKPESMRSYMTIEEVQALIDTPMPHEEYEI 227

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSV 206
                   A L+  + CGLRIS+ + L  +++  D+   R+     K +    +PL P  
Sbjct: 228 -----VKCAYLFSCF-CGLRISDIIKLKWKDVFVDRGQYRLAVSMKKTKEPIYLPLSPEA 281

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            K + E       D N+   LP    IR +          ++   +  G+    + HT R
Sbjct: 282 LKWMPERGGKSSED-NV-FDLPSANTIRMQ----------LKPWAKAAGISKRFSYHTSR 329

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           H+FAT +L+ G DL ++  +LGH  +  TQ+Y  + +K
Sbjct: 330 HTFATMMLTLGADLYTVSKLLGHADVKMTQVYAKIINK 367


>gi|109897057|ref|YP_660312.1| phage integrase [Pseudoalteromonas atlantica T6c]
 gi|109699338|gb|ABG39258.1| phage integrase [Pseudoalteromonas atlantica T6c]
          Length = 305

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 110/230 (47%), Gaps = 21/230 (9%)

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK---KSNSLPRALNEKQALTLVDNVL 142
           +S+ R++S I++ +K      +  E+ ++ +  +K    S      LN  Q  TL   + 
Sbjct: 67  KSVNRAMSAIRNVVKVGVIMGLVPENQLIQLSAIKLEKTSQHQGNPLNATQVNTLFSYLN 126

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVP 201
            HTS     ID RN AI  LL G GLR SE  +L  ++++  +  L +Q GKG+K R   
Sbjct: 127 KHTS----IIDVRNQAIFALLLGAGLRRSELTALHLKDLILHERQLVVQKGKGNKRRTAF 182

Query: 202 L----LPSVRKAILEYYDLCPF---DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           L    +  V   +L   D   +    +N   ++ + RGI  + +        +R   + +
Sbjct: 183 LPKWCVEHVYSWLLLRGDNAGYLFNPVNKTNRININRGITTESV-----YLLVRNTAKQV 237

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           GL  + + H LR ++ T LL    DL +++ + GH  +STT +Y   ++K
Sbjct: 238 GLG-NVSPHDLRRTYITRLLEQNIDLNTVRLMAGHQDISTTVVYDKRDNK 286


>gi|156138683|dbj|BAF75918.1| integron integrase [uncultured bacterium]
          Length = 160

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 41/60 (68%), Gaps = 3/60 (5%)

Query: 244 QRYIRQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           Q ++R  +R +   G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+
Sbjct: 101 QTFLRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 160


>gi|319654362|ref|ZP_08008449.1| hypothetical protein HMPREF1013_05069 [Bacillus sp. 2_A_57_CT2]
 gi|317393861|gb|EFV74612.1| hypothetical protein HMPREF1013_05069 [Bacillus sp. 2_A_57_CT2]
          Length = 388

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 98/231 (42%), Gaps = 35/231 (15%)

Query: 87  SLKRSLSGIKSFLKYL---KKRKITTESNIL--NMRNLKKSNSLPRALNEKQALTLVDNV 141
           +L R    I+ FLK+L   K  K+     +L  N+R+  + N   + ++  + ++LV+  
Sbjct: 150 TLSRKTVVIRGFLKFLYENKYIKVPLHQKMLSSNVRSFDRPN---KEMSSVEVISLVNYF 206

Query: 142 LLHTSHETKWIDARNSAILY----LLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGD 195
                        R   ILY    +L   GLRI E  +    ++  +D +  L + GKG 
Sbjct: 207 -------------RTHPILYGLISVLATTGLRIQELCNAKVSDLAYLDGEYWLTVMGKGQ 253

Query: 196 KIRIVPLLPSVRKAILEYYDL--CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R V + P+V KAI  +       F L+ +   PLF   +GK         Y+      
Sbjct: 254 KERQVLIHPNVLKAIEGFRKRRRLDFKLDPSDSSPLFTTSKGKAYGYKYLSNYLITKINK 313

Query: 254 LGLPL------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             L          T H+ RH FA      G DL +I+  LGH  + TTQIY
Sbjct: 314 ADLDFIKMRKNPITPHSFRHGFALISADQGADLLTIKESLGHSDIKTTQIY 364


>gi|172039474|ref|YP_001805975.1| putative integrase/recombinase [Cyanothece sp. ATCC 51142]
 gi|171700928|gb|ACB53909.1| putative integrase/recombinase [Cyanothece sp. ATCC 51142]
          Length = 360

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 110/261 (42%), Gaps = 52/261 (19%)

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRK----------ITTESNI---------------LNM 116
           K  +RS+  +L+ + +F +Y    K          ITT  N                  +
Sbjct: 100 KRSERSINLALTAVTTFYEYHDAHKNVDPKKFDRLITTRGNTRRGLLDGISKSKPTRQKL 159

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             LK+    P  L ++Q  TLV+     + H       R+  ++ LL G G+R+ E L L
Sbjct: 160 VKLKEPKKFPGCLTDEQLETLVN-----SCHR-----LRDKFLILLLNGTGIRVGELLGL 209

Query: 177 TPQNIMDDQSTL----------RIQGKGDKIRIVPLLPSVRKAILEY--YDLCPFDLNLN 224
             ++I D                 + KG + R +P++P + +   +Y  Y+    + N  
Sbjct: 210 QHEDIGDGSDYFIHVRKRRHNNEARAKGQE-RTIPVIPELLQMYNDYLIYEYPEVESNY- 267

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
           + + ++ G  G P+   V      +L +  G+ +    H  RH++AT LL  G     ++
Sbjct: 268 VFVNIWEGAIGMPMKAPVINTMFTRLSKKTGIKVY--PHLFRHTYATRLLKAGYSPERVK 325

Query: 285 SILGHFRLSTT-QIYTNVNSK 304
            +LGH  + TT  IY++V S+
Sbjct: 326 YLLGHTSIQTTLDIYSHVISE 346


>gi|195952979|ref|YP_002121269.1| integrase family protein [Hydrogenobaculum sp. Y04AAS1]
 gi|195932591|gb|ACG57291.1| integrase family protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 292

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 94/224 (41%), Gaps = 44/224 (19%)

Query: 92  LSGIKSFLKYLKKRKITTESN-------ILNMR---NLKKSNSLPRALNEKQALTLVDNV 141
            S +K ++K+  +R I +E N       I  +R   N+KK    P+AL+E +   +   V
Sbjct: 70  FSALKHYIKFAYRRNILSEENYNDILKAIEEVREDLNMKKQKYPPKALSEDELEKIFKAV 129

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL---RIQG---KGD 195
                      D R   I  L    G+R+ E   L P N   D+S +   R+     K +
Sbjct: 130 K----------DTRYYKIYNLFLNSGIRLIEFEKLRPDNFFLDKSNILWIRLDANMTKRN 179

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN----PGVFQRYIRQLR 251
           K RI P++   +   +E            I L ++  I     N     GV Q Y  +L 
Sbjct: 180 KPRITPVISFSKDKTIE------------IGLQIYEWIENFEYNFRVKRGVLQVYTDRLS 227

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           + L +  S   H+ RH++ T+L++ G     ++  +GH  + TT
Sbjct: 228 KRLNIDFSI--HSFRHTYITNLVNYGFSAEIVKEFVGHSDIKTT 269


>gi|89147454|gb|ABD62587.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 35/47 (74%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           G+    + H LRHSFATHLL +G D+R++Q +LGH  + TT+IYT+V
Sbjct: 116 GIEKRVSCHVLRHSFATHLLESGRDIRTVQELLGHTDVKTTEIYTHV 162


>gi|229136651|ref|ZP_04265326.1| Integrase-recombinase [Bacillus cereus BDRD-ST196]
 gi|228646811|gb|EEL02971.1| Integrase-recombinase [Bacillus cereus BDRD-ST196]
          Length = 390

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 67/153 (43%), Gaps = 10/153 (6%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           N  IL  L   G RI E  +   +++  D +  L++ GKGDK+R + +   + + I E  
Sbjct: 218 NYTILLALASTGARIQELCTTRVKDVHYDGRYWLKVTGKGDKVRELFVSEHLYQCICEMR 277

Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266
               F+  LN   + PLF   RG   N       +  +     L          TAHT R
Sbjct: 278 RRRGFETVLNQGDENPLFVNQRGNFYNSKTLSNQVTAMINKTKLDFLKHRENPVTAHTFR 337

Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
           H+FA   +  G  DL  +   LGH  + TT+IY
Sbjct: 338 HAFAIMAVEQGHADLYHLMQTLGHEDIQTTKIY 370


>gi|325263946|ref|ZP_08130679.1| site-specific recombinase, phage integrase family [Clostridium sp.
           D5]
 gi|324030984|gb|EGB92266.1| site-specific recombinase, phage integrase family [Clostridium sp.
           D5]
          Length = 355

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 123/297 (41%), Gaps = 30/297 (10%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFL-------AFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           IE   S  T  SY  D R F  FL         YT ++ T++ + ++   +I  +    +
Sbjct: 39  IEPKSSAKTRISYAYDIRIFFHFLMENNPVYKNYTVDQFTVKDLERIEPVDIEEYQEYLK 98

Query: 80  TQKIGD--------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
             K  +        + L R +S ++SF  Y  K ++  ++  L +   K  +     L+ 
Sbjct: 99  VYKGSEDKQITNTEKGLARKMSALRSFYAYFFKHQVIEKNPTLLVDMPKLHDKAIIRLDT 158

Query: 132 KQALTLVDNVLLH----TSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMDD 184
            +  +L++ V       T     + +    R+ AIL LL G G+R+SE + L  Q++   
Sbjct: 159 DEVASLLEYVEHGGDDLTGQRKVYFEKTKNRDLAILTLLLGTGIRVSECVGLDIQDVDFK 218

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLN 239
            + +++  KG    +V     V  A+  Y         P   + N    LF   + K + 
Sbjct: 219 NNGVKVTRKGGNEMVVYFGEEVENALKMYLYTTRKSTAPLPGHEN---ALFLSTQRKRIG 275

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
               +  +++  R +      T H LR ++ T L    GD+  +  +LGH  ++TT+
Sbjct: 276 VQAVENMVKKYARQITPNKKITPHKLRSTYGTALYKETGDIYLVADVLGHKDVNTTK 332


>gi|90020115|ref|YP_525942.1| Fis family transcriptional regulator [Saccharophagus degradans
           2-40]
 gi|89949715|gb|ABD79730.1| phage integrase [Saccharophagus degradans 2-40]
          Length = 362

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 97/222 (43%), Gaps = 23/222 (10%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++K   +G++ F KY+    +  E   +N+        LP  L   +   L+D+      
Sbjct: 71  TVKTDRNGLQFFYKYV----LQKEWKWVNIVKPPVVKVLPDVLTIDEIHRLLDSAK---- 122

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205
                 D R    + + +  GLR+SE L+L   +I  ++  + I +GKG K R V L  S
Sbjct: 123 ------DLRYQTFILVCFSMGLRLSETLNLKVGDIDSERMKVHIREGKGKKDRYVTLPLS 176

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-----LNPGVFQRYIRQLRRYLGLPLST 260
             +A+ +Y+       N N   P       +      +  G  Q+  R + R+ G+    
Sbjct: 177 ALQALRKYWKT---HRNPNYLFPSGNTAAQRQDATIHMGRGRLQQKFRSIVRHSGIRKKI 233

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           + H+LRHS+ T L      LR IQ  +GH   +TT  YT ++
Sbjct: 234 SIHSLRHSYGTLLTEANISLRKIQQEMGHVSPNTTARYTQLS 275


>gi|148655018|ref|YP_001275223.1| phage integrase family protein [Roseiflexus sp. RS-1]
 gi|148567128|gb|ABQ89273.1| phage integrase family protein [Roseiflexus sp. RS-1]
          Length = 337

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 79/184 (42%), Gaps = 22/184 (11%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR----IQGKGDKIRIVPLLPSVRKAI 210
           RN+A+L+ L+  G RISE LSL  ++++ D   +     + GKG + R V L    ++ I
Sbjct: 152 RNAALLHTLFSTGARISEVLSLNVEDVLSDDGCIAPRAFVVGKGQRRRAVFLREHAQQVI 211

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY---------IRQLRRYLGLPL--- 258
             Y             L +  G RG     G    +         I       G P    
Sbjct: 212 ARYLTARRATFPHAEALFISHGPRGAGGRLGRIAAWSIVTDAASAIASQVEQEGRPREAR 271

Query: 259 ---STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
              + T HT RH  AT LL+ G  L  + +ILGH   + T+I     +++  + + E++D
Sbjct: 272 ALRTVTPHTFRHFVATWLLNEGAQLSEVSAILGH---ANTRITEQYYARHTDERLQELHD 328

Query: 316 QTHP 319
           Q  P
Sbjct: 329 QFAP 332


>gi|110800856|ref|YP_695375.1| phage integrase family site specific recombinase [Clostridium
           perfringens ATCC 13124]
 gi|110675503|gb|ABG84490.1| site-specific recombinase, phage integrase family [Clostridium
           perfringens ATCC 13124]
          Length = 354

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 29/161 (18%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-----------GKG-----DKIRIVPL 202
           ++YL    G+RI E L LT  +I  +   + +            G G     + IRI+P+
Sbjct: 193 VVYLAVNTGMRIGEILGLTWNDIDFNNCLISVNKQWKILKDNSWGLGSVKSKNSIRIIPI 252

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
             SV + +L+Y  +   D          R    K  N  +  R    L+ Y G  +S   
Sbjct: 253 SNSVSEELLKYKTIINID---------NRVFNFKSKNT-ILSRVNILLKEY-GFNIS--L 299

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           H LRH++AT L++NG D ++   ILGH    T ++Y++VN+
Sbjct: 300 HELRHTYATKLIANGVDFKTAAKILGHSVEQTMKVYSHVNN 340


>gi|89147462|gb|ABD62591.1| integrase [uncultured bacterium]
          Length = 163

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 33/47 (70%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           G+    T H  RHSFATHLL NG D+R++Q +LGH  + TT IYT+V
Sbjct: 116 GVKKHVTPHIFRHSFATHLLENGYDVRTVQELLGHSDVKTTMIYTHV 162


>gi|163943320|ref|YP_001642550.1| integrase family protein [Bacillus weihenstephanensis KBAB4]
 gi|163865517|gb|ABY46575.1| integrase family protein [Bacillus weihenstephanensis KBAB4]
          Length = 390

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 10/153 (6%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           N  IL  L   G RI E  +   +++  D +  L++ GKGDK+R + +   + + I E  
Sbjct: 218 NYTILLALASTGARIQELCTTRVKDLHYDGKYWLKVTGKGDKVRELFISEHLYQCICEMR 277

Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266
               F   L+   + PLF   RG   N       +  + +   L          TAHT R
Sbjct: 278 RRRGFQTVLDRGDESPLFVNQRGNFYNSKTLSNQVTDMIKKTNLEFLQYRENPVTAHTFR 337

Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
           H+FA   +  G  DL  +   LGH  + TT+IY
Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370


>gi|288549717|ref|ZP_06390780.1| site-specific recombinase, phage integrase family [Enterobacter
           cancerogenus ATCC 35316]
 gi|288318031|gb|EFC56969.1| site-specific recombinase, phage integrase family [Enterobacter
           cancerogenus ATCC 35316]
          Length = 241

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 72/148 (48%), Gaps = 21/148 (14%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           D R  A+LYL    G R  +A  L  +N++ ++ +  ++ K +  R VP+   V   ++ 
Sbjct: 85  DNRKIAVLYL--STGARWGDAARLKAENVIHNRVSF-VKTKTNTPRTVPISDDVAAYVVG 141

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                             RG     ++   F+R +++++    LP     H LRHSFATH
Sbjct: 142 KT----------------RGFLFPEVSYAEFRRILKEVKP--DLPAGQATHALRHSFATH 183

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            + NGG++ ++Q IL H +++ T +Y +
Sbjct: 184 FMINGGNIITLQRILDHTKIAQTMVYAH 211


>gi|215407994|emb|CAS02324.1| integron integrase [uncultured bacterium]
          Length = 158

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 37/57 (64%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IY
Sbjct: 99  TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIY 155


>gi|182413035|ref|YP_001818101.1| integrase family protein [Opitutus terrae PB90-1]
 gi|182414799|ref|YP_001819865.1| integrase family protein [Opitutus terrae PB90-1]
 gi|182416162|ref|YP_001821228.1| integrase family protein [Opitutus terrae PB90-1]
 gi|182416192|ref|YP_001821258.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177840249|gb|ACB74501.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177842013|gb|ACB76265.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177843376|gb|ACB77628.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177843406|gb|ACB77658.1| integrase family protein [Opitutus terrae PB90-1]
          Length = 432

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 136/293 (46%), Gaps = 24/293 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++ +L  ER ++ +T++ +   T  FL FL    +  +    ++ +S  ++ A +  +R 
Sbjct: 145 YIVHLRDERAVAPVTVKRHLAHTTAFLEFL----KHDVQRPRLKTISAEQVEAQL--KRH 198

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLV 138
            K    +++   S ++SFL+Y      T    S ++  +   +  SLPR + E  AL  V
Sbjct: 199 MKDSKDNVRSLSSSLRSFLRYCADHGHTQADFSELVPRQRHYRHASLPRGI-EDSALERV 257

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKI 197
               L    +TK   AR+ AI+ LL   G+R   A  L  +++   Q+ +R +  KG K 
Sbjct: 258 ----LAAIDKTKPNGARDYAIILLLMAYGIRAISAAKLVMEDLDWRQAKIRFRAQKGGKE 313

Query: 198 RIVPLLPSVRKAILEYY----DLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
            IVPLL +V  AI+E+        P  ++ L+ + P   G         V + Y+ +   
Sbjct: 314 VIVPLLDAVGDAIIEWLRHRDPRTPHREVFLSTKAP--HGSLSSMAISTVVKHYLHKAGV 371

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +        AH+LRHS+A   L +   +++I   LGH  + TT IY   + K 
Sbjct: 372 HQP---GRGAHSLRHSWAIRALEHDQPIKAIADALGHRYIDTTYIYAKADLKT 421


>gi|13475042|ref|NP_106602.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025789|dbj|BAB52388.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 237

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 19/183 (10%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
           R+ A+  L++  G R+ E L+L   ++ +     +R+ GKG+K+R+ P+  +  + + E 
Sbjct: 45  RDYALFSLMFNTGARVQEILNLRICDLRLVSPCQVRLHGKGNKVRLCPIWRNTAQLLQEL 104

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPL---------STTAH 263
            +      +   +  +F   RG PL   GV  RY+  LR+Y+ +           S   H
Sbjct: 105 INTQHSPSDNPAEQRVFLNDRGTPLTRFGV--RYL--LRKYVDMAAGEESTLAEKSIHPH 160

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
           +LRH+ A HLL  G D+ +I   LGH  L+ T  Y   +     D   +  +Q  P +  
Sbjct: 161 SLRHTTAIHLLKAGVDIATISQWLGHSGLNVTMRYARADI----DMKRQALEQVFPDVMS 216

Query: 324 KDK 326
             K
Sbjct: 217 SAK 219


>gi|304396875|ref|ZP_07378755.1| integrase family protein [Pantoea sp. aB]
 gi|304355671|gb|EFM20038.1| integrase family protein [Pantoea sp. aB]
          Length = 338

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 95/231 (41%), Gaps = 43/231 (18%)

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKKSNSLPRALNEKQALTL 137
           R + +  R++   L+  ++    L++    T +N L N+R  K S S      E   LT+
Sbjct: 123 RVKTVTPRTVNLELAYFRAMFNELRRLDEWTAANPLENVREFKISES------EMAYLTI 176

Query: 138 VD-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
            +   LL     ++  D   + I+ +    G R SEA  L    I   Q  + ++ KG K
Sbjct: 177 EEIRTLLAECENSRSKDL--TTIVKICLATGARWSEAEGLKGNQIRAGQ-IIYVKTKGKK 233

Query: 197 IRIVPL-------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
            R VP+       LPS RKA L +              P +   R      G+       
Sbjct: 234 NRAVPITEKLHSDLPSSRKAELLFK-------------PCYSAFRKAMQRAGI------- 273

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                  P     H LRH+FA+H + NGG++  +Q ILGH  +  T  Y++
Sbjct: 274 -----ETPAGQLTHVLRHTFASHFMMNGGNILVLQRILGHTDIKVTMRYSH 319


>gi|149197314|ref|ZP_01874366.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149139860|gb|EDM28261.1| phage integrase [Lentisphaera araneosa HTCC2155]
          Length = 248

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 90/201 (44%), Gaps = 30/201 (14%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++K     +  F +Y+ KR    E   L +  + +  SLP  L++       D  LL  S
Sbjct: 67  TVKMDRCALSFFYQYVLKR----EWKWLEIVRIPRVKSLPDILSQ-------DETLLILS 115

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS 205
           H  K   AR    L  +Y  GLRISE + +   +I  D+  L ++  KG K R+VPL P 
Sbjct: 116 HLEK---ARYRTCLTAIYSMGLRISEGVRIQTGDICKDRMRLHVRNSKGYKDRLVPL-PQ 171

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---------LNPGVFQRYIRQLRRYLGL 256
           V   +L  Y    + ++ N  L LF    GK          ++ G  Q   +      GL
Sbjct: 172 VTYQMLRDY----WVMHRN-PLLLFPRYAGKSRSNSKTTLHMDKGGVQSAFKAALADSGL 226

Query: 257 PLSTTAHTLRHSFATHLLSNG 277
               + H+LRHS+ATHL+  G
Sbjct: 227 AKQVSVHSLRHSYATHLVEAG 247


>gi|330997948|ref|ZP_08321782.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329569552|gb|EGG51322.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 431

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 70/151 (46%), Gaps = 20/151 (13%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYY 214
            L+GC  GL   +  +LT   I  MD      I  +  K R+   VPL+   ++ I  Y 
Sbjct: 252 FLFGCFTGLSYIDIKTLTHDKIQRMDFDGEEWIITRRTKTRVSSNVPLMEIAKELIERYR 311

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL- 273
            L   DL   I           P N  V   +++Q+ +  G+      H  RH+FAT + 
Sbjct: 312 GLAGGDLVFPI-----------PSNS-VCNTHLKQIAKACGIHKEIGFHLSRHTFATTVY 359

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           L NGG + ++  ILGH  +STTQIY  V ++
Sbjct: 360 LCNGGTIEALSKILGHKHISTTQIYAEVTNR 390


>gi|229104798|ref|ZP_04235459.1| Integrase/recombinase (XerC/CodV family) [Bacillus cereus Rock3-28]
 gi|228678671|gb|EEL32887.1| Integrase/recombinase (XerC/CodV family) [Bacillus cereus Rock3-28]
          Length = 328

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 99/222 (44%), Gaps = 24/222 (10%)

Query: 83  IGDRSLKRSLSGIKSFLKYL----KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + D ++   L  IK F  +L    ++ KI    +I N++  +K   L   L E + + ++
Sbjct: 97  LSDTTIANYLRNIKVFFNFLFQVEREIKINPVESIQNIKPKRKQKPL---LTEDEIIRVL 153

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
               + T H       RN  +  LL   G+RISE L L P+ I      + I+   +K +
Sbjct: 154 RVFDVTTFH-----GYRNWIVTRLLLDTGMRISECLELCPEKIDFKHKAILIENSKNKQQ 208

Query: 199 IVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
                   + +  K  L Y D      N +   P    IRG  L    F++ +R+  + +
Sbjct: 209 RYTYFSFKMANDLKRWLLYRDRYS---NSDYMFP---TIRGTQLEVRNFEKSLREAGKRV 262

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           G  +S   H LR++FA + + NGGD  S+  ILGH  +  TQ
Sbjct: 263 G--VSIHPHQLRNNFAKYYVLNGGDWASLSRILGHSSVEVTQ 302


>gi|218848070|ref|YP_002454723.1| integrase-recombinase [Bacillus cereus G9842]
 gi|218546201|gb|ACK98594.1| integrase-recombinase [Bacillus cereus G9842]
          Length = 381

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 68/171 (39%), Gaps = 10/171 (5%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTL--RIQGKGDKIRIVPLLPSVRKAILEY 213
           N  I+ LL   GLRI E  S    ++   +  L  R+ GKGDK R   + P + + I EY
Sbjct: 209 NYMIILLLVSTGLRIQEVASAKIGDLFRAEGKLWLRVIGKGDKPREAYISPHLFECISEY 268

Query: 214 YDLCPFDLNLN--IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTL 265
                    LN     PL      +  N       +  +     +P         TAHT 
Sbjct: 269 RSRKGLKTQLNRLDNSPLIVSNHLRKFNSTYLSNKVTSILSQARIPCVEQRENPITAHTF 328

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           RH FA     N  +L  IQ  LGH   +TT+IY   + K   +  +   DQ
Sbjct: 329 RHGFAIMAAENDVELLRIQQTLGHASANTTKIYLEKHMKRKHNAALSFADQ 379


>gi|293371342|ref|ZP_06617779.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|294645314|ref|ZP_06723030.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294808774|ref|ZP_06767507.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|292633702|gb|EFF52257.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292639393|gb|EFF57695.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294444071|gb|EFG12805.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 376

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 18/155 (11%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSVRKAILEY 213
           SA L+  + CGLRIS+ + L  +++  D    R+     K +    +PL     K + E 
Sbjct: 227 SAYLFSCF-CGLRISDIIGLQWKDVFIDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPER 285

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            D    D   ++              P    + I+   +  G+    T HT RH+FAT +
Sbjct: 286 GDKTADDHVFDL--------------PSGINQLIKPWAKAAGISKRFTFHTARHTFATMM 331

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           L+ G DL ++  +LGH  +  TQ+Y  + +K   D
Sbjct: 332 LTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKKDD 366


>gi|149922734|ref|ZP_01911160.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149816439|gb|EDM75939.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 374

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 20/160 (12%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----------GKGDKIRIVPL 202
           D  + AI+ L    GLR  E   L   ++   ++ L ++           K DKIR++P+
Sbjct: 200 DGIDLAIVLLGGDAGLRAGEIRGLHWDSLDFQRNRLTVERAEWHGHITTPKHDKIRVLPM 259

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
              + KA+ +     P +  L +  P      G+PL  G+  + +R++ +  GL      
Sbjct: 260 TQRLNKALRQ----LPRECKLVLPQP-----SGEPLTAGLLDKRLRRVEKRAGL-RDKGP 309

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           HTLRH+F +HL   G   R IQ + GH  L TT+ Y +++
Sbjct: 310 HTLRHTFCSHLAMRGIPARVIQQLAGHSSLVTTERYMHLS 349


>gi|330504101|ref|YP_004380970.1| phage integrase family protein [Pseudomonas mendocina NK-01]
 gi|328918387|gb|AEB59218.1| phage integrase family protein [Pseudomonas mendocina NK-01]
          Length = 339

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 29/150 (19%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           + +  +    G R  EA +LTP  + +   T  +  KG ++R +P+   + + I  ++  
Sbjct: 186 AMVAAICLATGARWGEAQALTPDRVRNQLVTF-VNTKGKRVRSIPIALELEQQIHRHFK- 243

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG-----LPLSTTAHTLRHSFAT 271
                                   G F   +    + LG     +P   ++H LRH+FA+
Sbjct: 244 ----------------------QHGQFSNCLNSFDKALGESRLPVPAGQSSHVLRHTFAS 281

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H + NGG++ ++Q ILGH  L+ T  Y ++
Sbjct: 282 HFVMNGGNILTLQKILGHTTLAMTMRYAHL 311


>gi|312142468|ref|YP_003993914.1| integrase family protein [Halanaerobium sp. 'sapolanicus']
 gi|311903119|gb|ADQ13560.1| integrase family protein [Halanaerobium sp. 'sapolanicus']
          Length = 221

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 87/209 (41%), Gaps = 33/209 (15%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K+   +P  L E++        LL   +E      RN  ++ L+   GLR+ E L+L   
Sbjct: 3   KRGRRIPEVLREEE-----QKQLLEVFNERYPTALRNKTMIRLMLKAGLRLGETLNLKWN 57

Query: 180 NIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGI 233
           NI    + L I +GKG K R + L       + ++ +     L   +L     L +F  +
Sbjct: 58  NINFPAAKLSIVEGKGRKDRNLWLGEKTLNQLGKWRERQNKVLAEKNLENENNL-VFTSL 116

Query: 234 RGKPLNP--------------GVFQRYIRQLRRYLGLPLSTT-------AHTLRHSFATH 272
            GK LN               G+ +   +  R   G  L  T        H LRH+FAT 
Sbjct: 117 AGKKLNEANVRKMVYNYAEKTGIQEEVEKNYRDEEGKELEETYWQKKVSPHVLRHTFATE 176

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           L     DLR +Q  LGH  + TT IYT++
Sbjct: 177 LYRMTNDLRKVQKTLGHSSIQTTMIYTHL 205


>gi|220909514|ref|YP_002484825.1| integrase family protein [Cyanothece sp. PCC 7425]
 gi|219866125|gb|ACL46464.1| integrase family protein [Cyanothece sp. PCC 7425]
          Length = 373

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 102/223 (45%), Gaps = 29/223 (13%)

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
           KSFL ++ K K T     + +  +K    LP+ L+E+    +++          K I  R
Sbjct: 140 KSFLHHVNKGKETR----IRLLKIKPPRKLPKTLDEEAVKRVIEAC--------KRI--R 185

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP------SVRKA 209
           +  ++ LL+  G+RI +AL L  +++    + ++I  + D I              V K 
Sbjct: 186 DKFLITLLHETGMRIGQALGLRHEDVHSWDNEIQIVPRDDNINGARAKTRDTYKLHVSKE 245

Query: 210 ILEYYDLC-----PFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           ++  Y        P D++ + + + ++ G+RG PL+    Q   R+L R     +  T H
Sbjct: 246 LMGLYSAYVTTEYPEDIDSDYVFVNIWEGMRGYPLSYSTVQALFRRLSR--DAEVRVTPH 303

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKN 305
             RH+ AT L+  G  +  +Q  LGH  + TT   Y +V +++
Sbjct: 304 MFRHTHATDLIRTGMQMSYVQKRLGHASIQTTIDTYVHVTNED 346


>gi|70607234|ref|YP_256104.1| integrase/recombinase XerD [Sulfolobus acidocaldarius DSM 639]
 gi|68567882|gb|AAY80811.1| integrase/recombinase XerD [Sulfolobus acidocaldarius DSM 639]
          Length = 287

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 135/288 (46%), Gaps = 56/288 (19%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI-----SKRRTQKIG 84
           G S+ T++ Y    + FL F+          +  RQ++ +++ A++     S  R++++ 
Sbjct: 26  GASENTIRLYSIAIKDFLDFVK---------KDPRQVTNSDVNAWLLKILKSSTRSKRVR 76

Query: 85  DRSLKRS---------LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL-NEKQA 134
           + + KR          L+ +  FLK+L K             ++K +  +P+A  NE +A
Sbjct: 77  EENEKRRMKLTTAKIYLTAVLRFLKWLGK-------------DVKPT--VPKARKNEIRA 121

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-K 193
           LT  +   L  S +      R++ IL LL   G+R  E LS+  Q+I  ++  + I+  K
Sbjct: 122 LTYEELEKLKASAKK----LRDAVILNLLIDTGIRAKELLSIKVQDIDLERRRIIIRNTK 177

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
             + RIV    S   A+L+ Y      +  N + P  + I    +      R +R+L + 
Sbjct: 178 NGESRIV-FFTSHTGALLKKY------IQKNKKEPEDKLIN---MTYQALYRKLRRLGKK 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +G+ L    H LRH+FAT  +  G  L  +Q ILGH  +  TQ+YT++
Sbjct: 228 IGIDLR--PHILRHTFATEAIRKGIPLPVVQKILGHKDIRVTQVYTHL 273


>gi|89098276|ref|ZP_01171161.1| tyrosine recombinase [Bacillus sp. NRRL B-14911]
 gi|89087133|gb|EAR66249.1| tyrosine recombinase [Bacillus sp. NRRL B-14911]
          Length = 389

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 109/265 (41%), Gaps = 48/265 (18%)

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK---KSNSLPRALNE 131
           I+K  T+K    S+ R +S ++S  KYL  +    E      RN+    + N +   L  
Sbjct: 115 INKNETKKPEKVSINRKISSLRSLFKYLTTQTENEEGEPYFYRNVMLKIEVNKVKETLGA 174

Query: 132 KQA---------------LTLVDNV----LLHTSHETKWID---ARNSAILYLLYGCGLR 169
           + +               L  V N+    L   S +  +      R+ AIL L  G G+R
Sbjct: 175 RASKISSKIFQNDEDVSFLDFVQNIYETELPEDSRKKAYFKRDKERDIAILSLFLGSGIR 234

Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL--------------EYYD 215
           ++E  +L  +++   ++T+ I  KG K   +P++P   + +               E YD
Sbjct: 235 VNELSNLRLRDLDFQENTINIIRKGGKQDTIPVVPESMEDVKNLLKIRAERYNASNEDYD 294

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
               +   N+ +PL     G      + ++Y +  +       S + H LRH++ T+L  
Sbjct: 295 YVFVNKKKNVAVPLSNRAIG-----DLVKKYTKAFKS----NKSMSPHKLRHTYGTNLWE 345

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTN 300
             GD+  +   LGH   ST  +Y+N
Sbjct: 346 ETGDIHLLMRQLGHSSTSTAALYSN 370


>gi|240173390|ref|ZP_04752048.1| phage integrase family protein [Mycobacterium kansasii ATCC 12478]
          Length = 346

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 131/314 (41%), Gaps = 28/314 (8%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           +E L     +L +L   RG S  T+++Y  D      FL   TE  +T+  ++     + 
Sbjct: 18  WEGLDSANAFLTHLA-GRGFSAATVRAYAFDVANLARFL---TERDVTLSEVQAPLVFDW 73

Query: 72  RAFISKRRTQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
             +   RRT +         ++ R ++ +++  +YL        + + + R  +      
Sbjct: 74  IDWQGVRRTGRPQPGSAAASTVNRRVAAVRALFEYLAMTGRRGNNPVPSPRRGQGLRRSE 133

Query: 127 RAL-------NEKQALTLVDNV-LLHTSHETKWIDA--------RNSAILYLLYGCGLRI 170
           R L         +    LV    LL  S     IDA        R+ A++  +   GLR 
Sbjct: 134 RGLLGHLGPGRARPGGRLVRQPQLLPESLPASDIDAFVATLGSHRDRAMVLAMLLGGLRS 193

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPL 229
           +EA  L   ++   +  LR+ GKG K R VP+  +    +  Y  L  P  L+      +
Sbjct: 194 AEARGLLLADVDMGRRRLRVIGKGGKERYVPVDAAFFTEVAAYLRLERPAGLSTPQCFVV 253

Query: 230 FRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
            RG   G P++    +   R+ R   G  +    H LRH++ T L S G DL ++++++G
Sbjct: 254 LRGPTTGAPVSEAGLRSLFRRHRELSG-SIRVRPHRLRHTYGTELASAGIDLLALRALMG 312

Query: 289 HFRLSTTQIYTNVN 302
           H    TT  Y +++
Sbjct: 313 HASPETTARYVHLS 326


>gi|197285081|ref|YP_002150953.1| integrase/recombinase [Proteus mirabilis HI4320]
 gi|194682568|emb|CAR42606.1| putative integrase/recombinase [Proteus mirabilis HI4320]
          Length = 330

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 3/146 (2%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R++AIL +L GCGLR SE ++L  ++I        ++GKG+K RI  +     + +  + 
Sbjct: 169 RDAAILSVLLGCGLRRSEIVALNYEHIQFRDQAFIVRGKGNKERISYMPEDTWERVQLWI 228

Query: 215 DLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           D      D  L  ++  F  +  + +       YI + R+          H LR +FA+ 
Sbjct: 229 DEIRGAQDGALFTRIRRFDDVTDERITDQAIY-YILETRQQESGIDKFAPHDLRRTFASA 287

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIY 298
           +L NG D+ +++  +GH  + TTQ Y
Sbjct: 288 MLDNGEDIVTVKDAMGHASIMTTQRY 313


>gi|53714080|ref|YP_100072.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|253567394|ref|ZP_04844843.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|255009170|ref|ZP_05281296.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           3_1_12]
 gi|298483947|ref|ZP_07002117.1| tyrosine type site-specific recombinase [Bacteroides sp. D22]
 gi|313146917|ref|ZP_07809110.1| integrase [Bacteroides fragilis 3_1_12]
 gi|52216945|dbj|BAD49538.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|251943963|gb|EES84491.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|298269856|gb|EFI11447.1| tyrosine type site-specific recombinase [Bacteroides sp. D22]
 gi|313135684|gb|EFR53044.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 376

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 18/155 (11%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSVRKAILEY 213
           SA L+  + CGLRIS+ + L  +++  D    R+     K +    +PL     K + E 
Sbjct: 227 SAYLFSCF-CGLRISDIIGLQWKDVFIDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPER 285

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            D    D   ++              P    + I+   +  G+    T HT RH+FAT +
Sbjct: 286 GDKTADDHVFDL--------------PSGINQLIKPWAKAAGISKRFTFHTARHTFATMM 331

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           L+ G DL ++  +LGH  +  TQ+Y  + +K   D
Sbjct: 332 LTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKKDD 366


>gi|281424486|ref|ZP_06255399.1| integrase [Prevotella oris F0302]
 gi|281401323|gb|EFB32154.1| integrase [Prevotella oris F0302]
          Length = 410

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 16/148 (10%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            ++ C  GL   +  +LTP+NI  +DD+  +  + +   +    LL  + K I+E Y   
Sbjct: 249 FVFSCFTGLAYIDVANLTPENIVTLDDKQWIMTKRQKTSVATNVLLLDIPKNIIEKYSGK 308

Query: 218 PF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
            + D  L    P+    R           Y++++    G+    T H  RH+FAT  LS 
Sbjct: 309 TYRDGKL---FPMLTNQRTNS--------YLKEIADICGIKKDLTFHMARHTFATMSLSK 357

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           G  + S+  +LGH  + TTQIY  + +K
Sbjct: 358 GVSMESVSKMLGHTNIKTTQIYARITNK 385


>gi|256840382|ref|ZP_05545890.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
 gi|256737654|gb|EEU50980.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
          Length = 376

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 18/155 (11%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSVRKAILEY 213
           SA L+  + CGLRIS+ + L  +++  D    R+     K +    +PL     K + E 
Sbjct: 227 SAYLFSCF-CGLRISDIIGLQWKDVFIDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPER 285

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            D    D   ++              P    + I+   +  G+    T HT RH+FAT +
Sbjct: 286 GDKTADDHVFDL--------------PSGINQLIKPWAKAAGISKRFTFHTARHTFATMM 331

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           L+ G DL ++  +LGH  +  TQ+Y  + +K   D
Sbjct: 332 LTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKKDD 366


>gi|315608518|ref|ZP_07883504.1| integrase [Prevotella buccae ATCC 33574]
 gi|315249790|gb|EFU29793.1| integrase [Prevotella buccae ATCC 33574]
          Length = 447

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 142/317 (44%), Gaps = 49/317 (15%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + + I+R L    L++Y+      L  L  Y ++K  +  I  LS  + +AFI       
Sbjct: 164 ERIGIDRALKTFELRTYQ------LSLLREYVQKKHKVSDI-PLSQLD-KAFIEGFEYYL 215

Query: 83  IGDRSLKRS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             DR LKRS     LS +++ ++   K+ +      L+    K+    PR++ +++   +
Sbjct: 216 TIDRRLKRSSISSALSTLQTIVRMAVKKGVLDFYPFLDY-GYKRPKGEPRSITKEELERI 274

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +D        E +W + R    L++ + C  GL IS+  +L  +NI+ ++  L I+G+  
Sbjct: 275 ID-------LEIEWENYRIVRDLFV-FSCFSGLAISDVRNLREENIVLEEGELCIKGRRI 326

Query: 196 KIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL----NPGVFQRYIR 248
           K +    V +LP    AI+E Y                RG R   +       +    + 
Sbjct: 327 KTKTPYRVQVLPPAW-AIMERY----------------RGKRAGFVFDVPTTDIILNGMH 369

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQ+Y  V+S+   
Sbjct: 370 YIQRNIGMESPLTFHMARHTFASLITLSAGVPIETVSRMLGHTSLRTTQVYAAVSSERIH 429

Query: 308 DWMMEIYDQTHPSITQK 324
             M  I  +   + T K
Sbjct: 430 RDMQAIQQRIQDTFTLK 446


>gi|229048170|ref|ZP_04193739.1| Phage integrase [Bacillus cereus AH676]
 gi|228723157|gb|EEL74533.1| Phage integrase [Bacillus cereus AH676]
          Length = 360

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 14/158 (8%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDD---QSTLRIQ------GKGDKIRIVPLLP 204
           AR+      L   GLRI+E + L   ++  D      + ++      G G K R VP+L 
Sbjct: 170 ARDYVFFKTLSLSGLRINELVMLDINDLRFDLGHNGKIHVRYGKGSRGTGHKPRWVPMLS 229

Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-- 260
            + K +LE+Y  ++ P   N  +   LF    G+ +     +  + + ++ +G+P S   
Sbjct: 230 GLDK-LLEWYLEEILPGLKNNQVNAALFLSEAGERVGRDTMRSNLIRRQKEIGIPKSEQF 288

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +AH LRH+FAT+ +  G D+ ++  +LGH  +STT  Y
Sbjct: 289 SAHQLRHAFATNYVELGVDILTMSKLLGHSNVSTTAGY 326


>gi|226349698|ref|YP_002776812.1| putative tyrosine recombinase [Rhodococcus opacus B4]
 gi|226245613|dbj|BAH55960.1| putative tyrosine recombinase [Rhodococcus opacus B4]
          Length = 390

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LFR   G P+ PG     +    R  GL  +   H LRH FA+++L  GG +  +Q +LG
Sbjct: 292 LFRAPIGAPMTPGAVNALLAAASRRAGLDRAVHPHALRHGFASNVLDAGGSIDEVQELLG 351

Query: 289 HFRLSTTQIYTN 300
           H  +S++Q+Y +
Sbjct: 352 HASISSSQVYVH 363


>gi|91218504|ref|ZP_01255443.1| probable integrase [Psychroflexus torquis ATCC 700755]
 gi|91183335|gb|EAS69739.1| probable integrase [Psychroflexus torquis ATCC 700755]
          Length = 137

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 32/46 (69%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +  T H LRHSFATHLL  G DLR IQ +LGH    TT+IYT+V +
Sbjct: 81  IPVTPHMLRHSFATHLLEAGVDLRQIQVLLGHQSTKTTEIYTHVAT 126


>gi|259649734|dbj|BAI41896.1| site-specific tyrosine recombinase [Lactobacillus rhamnosus GG]
          Length = 358

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/319 (20%), Positives = 131/319 (41%), Gaps = 56/319 (17%)

Query: 54  TEEKITIQTIRQLSYTEIRAFIS--------KRRTQKIGDRSLKRSLSGIKSFLKYLKKR 105
           + + + ++T+ +LS  + +AF++            +++  RS+   L GIK+  ++L + 
Sbjct: 50  SPQNVPLKTLERLSLRDAQAFVAYLLERPSKTHPNKRMTRRSVALRLVGIKALYRFLTEE 109

Query: 106 KITTES-------NILNMRNLKKSNSLPRALNEK-QALTLVDNVLLHTSHETKWID---- 153
                        N+ N   LK         N K Q +  VD      +   +W+D    
Sbjct: 110 SEPNADGEPYFYRNVWNKVKLKTHAETTTYRNHKLQEMLFVDG---EDARFLQWLDRQYA 166

Query: 154 ---------------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG---D 195
                           RN AI+ LL+G G+R+SE +++  +++  D+ T+++  KG   D
Sbjct: 167 QQLPSKPRAYFEATKERNLAIIALLFGSGVRVSELVNMNLEDLNMDRHTVQVVRKGNFQD 226

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-------PGVFQRYIR 248
           ++     +     A L+         +     PLF    G+ +N          F+RY  
Sbjct: 227 RVNFADWIDPYLTAYLK--SQTAMIGHQKPTSPLFVTQIGQTVNRIRQNTIEAFFKRYTT 284

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
              R       +T H  RH+  T++ +   D++ +   LG    S T +Y N++ K+G  
Sbjct: 285 AYGR------PSTPHKARHTLGTNIYTVTKDVQQVADQLGQTTTSATDLYINLSDKSGKA 338

Query: 309 WMMEIYDQTHPSITQKDKK 327
            + E+ +    ++ Q  ++
Sbjct: 339 ALREVSETAAKAVDQHPQQ 357


>gi|199599257|ref|ZP_03212658.1| site-specific tyrosine recombinase XerS [Lactobacillus rhamnosus
           HN001]
 gi|258508420|ref|YP_003171171.1| site-specific tyrosine recombinase XerS [Lactobacillus rhamnosus
           GG]
 gi|199589869|gb|EDY97974.1| site-specific tyrosine recombinase XerS [Lactobacillus rhamnosus
           HN001]
 gi|257148347|emb|CAR87320.1| Tyrosine recombinase xerC [Lactobacillus rhamnosus GG]
          Length = 370

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/319 (20%), Positives = 131/319 (41%), Gaps = 56/319 (17%)

Query: 54  TEEKITIQTIRQLSYTEIRAFIS--------KRRTQKIGDRSLKRSLSGIKSFLKYLKKR 105
           + + + ++T+ +LS  + +AF++            +++  RS+   L GIK+  ++L + 
Sbjct: 62  SPQNVPLKTLERLSLRDAQAFVAYLLERPSKTHPNKRMTRRSVALRLVGIKALYRFLTEE 121

Query: 106 KITTES-------NILNMRNLKKSNSLPRALNEK-QALTLVDNVLLHTSHETKWID---- 153
                        N+ N   LK         N K Q +  VD      +   +W+D    
Sbjct: 122 SEPNADGEPYFYRNVWNKVKLKTHAETTTYRNHKLQEMLFVDG---EDARFLQWLDRQYA 178

Query: 154 ---------------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG---D 195
                           RN AI+ LL+G G+R+SE +++  +++  D+ T+++  KG   D
Sbjct: 179 QQLPSKPRAYFEATKERNLAIIALLFGSGVRVSELVNMNLEDLNMDRHTVQVVRKGNFQD 238

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-------PGVFQRYIR 248
           ++     +     A L+         +     PLF    G+ +N          F+RY  
Sbjct: 239 RVNFADWIDPYLTAYLK--SQTAMIGHQKPTSPLFVTQIGQTVNRIRQNTIEAFFKRYTT 296

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
              R       +T H  RH+  T++ +   D++ +   LG    S T +Y N++ K+G  
Sbjct: 297 AYGR------PSTPHKARHTLGTNIYTVTKDVQQVADQLGQTTTSATDLYINLSDKSGKA 350

Query: 309 WMMEIYDQTHPSITQKDKK 327
            + E+ +    ++ Q  ++
Sbjct: 351 ALREVSETAAKAVDQHPQQ 369


>gi|310829015|ref|YP_003961372.1| integrase family protein [Eubacterium limosum KIST612]
 gi|308740749|gb|ADO38409.1| integrase family protein [Eubacterium limosum KIST612]
          Length = 408

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 103/225 (45%), Gaps = 37/225 (16%)

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           IL  R +KK    P  L+ K+A  L    +L  S + K    +++A+L+ L   G+R+ E
Sbjct: 194 ILPKRPIKK----PVFLDVKEAQKL--ETVLKNSRDHK----KSTAVLFAL-KTGIRLGE 242

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKI-----------------------RIVPLLPSVRKA 209
             +L  +++  D+  ++I+    ++                       R +P+ P + + 
Sbjct: 243 LAALRWKDVDFDEQVIQIRDSVQRVKNSEKSGMKTKMVFEGTKSYSSNRTIPMNPEIHEL 302

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           + +YY+      N + +  +F   +   ++P V+Q Y R++ +  G+      H LRH+F
Sbjct: 303 LYQYYETMKHRENFS-ETFVFTNRKNSFIDPRVYQLYFRRILKKAGIR-HVNFHALRHTF 360

Query: 270 ATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDWMMEI 313
           ATH  S    +  +  ILGH  +  T Q+Y +V S      M+++
Sbjct: 361 ATHAASKNMQISVLSRILGHSNVGLTLQLYVHVLSGQDQQEMLKL 405


>gi|296840911|ref|ZP_06899430.1| tyrosine recombinase XerD [Neisseria polysaccharea ATCC 43768]
 gi|296839548|gb|EFH23486.1| tyrosine recombinase XerD [Neisseria polysaccharea ATCC 43768]
          Length = 72

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/41 (60%), Positives = 34/41 (82%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + H+LRH+FATHL+ +G DLR +Q +LGH  L+TTQIYT+V
Sbjct: 16  SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHV 56


>gi|161525451|ref|YP_001580463.1| integrase domain-containing protein [Burkholderia multivorans ATCC
           17616]
 gi|160342880|gb|ABX15966.1| integrase domain protein SAM domain protein [Burkholderia
           multivorans ATCC 17616]
          Length = 289

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 107/220 (48%), Gaps = 19/220 (8%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           ++L  ER  S+ T ++Y    +  + F A   + K +  T+ Q+  + I  F+     ++
Sbjct: 14  EHLPAERNASQHTCEAYAYSFQLLVEFAAGRLKCKPSQLTLDQIDASMIMTFLEHIEAKR 73

Query: 83  IGDRSLKRS--LSGIKSFLKYLKKR--KITTESNILNMRNLKKSNS-LPRALNEKQALTL 137
            G+ +  R+  L+ IKSF +YL+ R      +S  ++   +KK++  L   L  ++   L
Sbjct: 74  -GNCARTRNARLAAIKSFFRYLEYRLPAYLDQSRQIHAIPMKKTDQMLIDYLTREELKAL 132

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT-PQNIMDDQSTLRIQGKGDK 196
           +D+   H+         R+ A+L+L Y CGLR++E +SL   Q      +T+ I GKG +
Sbjct: 133 LDSPDPHSQSGI-----RDRAMLHLAYACGLRVAELVSLRLDQFDPRTPATIHIVGKGRR 187

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
            R++PL         E  DL   +  L++Q P   G+  K
Sbjct: 188 ERVLPLWK-------EADDLFFGETFLHVQSPCHGGLDSK 220


>gi|30908728|gb|AAP37596.1| IntI [uncultured bacterium]
          Length = 160

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 4/59 (6%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            F+R + Q     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+
Sbjct: 106 AFKRAVEQA----GITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 160


>gi|331085647|ref|ZP_08334730.1| hypothetical protein HMPREF0987_01033 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406570|gb|EGG86075.1| hypothetical protein HMPREF0987_01033 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 322

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 118/285 (41%), Gaps = 40/285 (14%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRAFISKRRTQKIGDRS- 87
           G S+ T+Q Y     + L            IQT +R++S  EIR ++     QKI D S 
Sbjct: 59  GCSERTIQYYSVTVDKMLQ----------KIQTPVRKISTEEIRKYLVD--YQKINDCSK 106

Query: 88  --LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
             +      I SF  +L++     +S +  +  +K    +   ++++    L D+     
Sbjct: 107 VTVDNVRRNISSFFSWLEEEDYILKSPMRRIHKIKTKQPVKEIISDEAIEMLRDHCQC-- 164

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
                    R+ A++ LLY  G+R+ E ++L   ++  +     + GKGDK R V     
Sbjct: 165 --------PRDLAMIDLLYSTGIRVGELVNLNISDVDFEARECVVFGKGDKERRVYFDAK 216

Query: 206 VRKAILEYY----DLCPFDLNLNIQLPLFR-GIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
            +  +L Y     D  P  L + +  P  R  I G  +        IR L R L +    
Sbjct: 217 AKLHLLNYLSERKDNNPA-LFVTLDAPYDRLKISGVEIR-------IRTLGRKLNME-KI 267

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN  N
Sbjct: 268 HPHKFRRTMATRAIDKGMPIEQVQKLLGHSQIDTTMQYAIVNQTN 312


>gi|163855807|ref|YP_001630105.1| putative integrase/recombinase [Bordetella petrii DSM 12804]
 gi|163259535|emb|CAP41836.1| putative integrase/recombinase [Bordetella petrii]
          Length = 419

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 124/284 (43%), Gaps = 29/284 (10%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           E+GL + ++ +Y    R F  +LA   +  I++  +     TE   FI+ R  + +    
Sbjct: 138 EKGLRQTSIHNYTFTLRPFDSYLA---QAGISLDKLTPACITE---FINDR-AKTLHKSG 190

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNM--RNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           +  +   ++ FL+YL +  I     + ++    + +  S+PRA+       L+ ++   +
Sbjct: 191 MLNTAGALRVFLRYLHREGIIANDLVRSVPRGRVYRQASIPRAIGWADVERLLASIDRRS 250

Query: 146 SHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
                 +  R+ AIL LL   GLR  E  AL L   +    Q  + ++  G   R  PL 
Sbjct: 251 D-----LGKRDYAILTLLTSYGLRAREIVALCLDDLDWAHGQIGIPMRKGGHSTRY-PLS 304

Query: 204 PSVRKAILEYYDLCPFDLN-----LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            +V +AI+ Y  +   D++     L ++ P        P+N       +    R +G+ +
Sbjct: 305 AAVGEAIIAYLHVRRTDIDDRRIFLTVRSPY------TPMNHWTVSSMVAGHLRSIGIQV 358

Query: 259 S-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +   +HTLRHS   HL+      + I   +GH   ++T +Y  V
Sbjct: 359 ARAGSHTLRHSCVQHLVEADLPFKVIGDYVGHRHPASTLVYGKV 402


>gi|227355496|ref|ZP_03839891.1| integrase/recombinase [Proteus mirabilis ATCC 29906]
 gi|227164292|gb|EEI49181.1| integrase/recombinase [Proteus mirabilis ATCC 29906]
          Length = 330

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 3/146 (2%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R++AIL +L GCGLR SE ++L  ++I        ++GKG+K RI  +     + +  + 
Sbjct: 169 RDAAILSVLLGCGLRRSEIVALNYEHIQFRDQAFIVRGKGNKERISYMPEDTWERVQLWI 228

Query: 215 DLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           D      D  L  ++  F  +  + +       YI + R+          H LR +FA+ 
Sbjct: 229 DEIRGSQDGALFTRIRRFDDVTDERITDQAIY-YILETRQQESGIDKFAPHDLRRTFASA 287

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIY 298
           +L NG D+ +++  +GH  + TTQ Y
Sbjct: 288 MLDNGEDIVTVKDAMGHASIMTTQRY 313


>gi|168218110|ref|ZP_02643735.1| DNA integration/recombination protein [Clostridium perfringens NCTC
           8239]
 gi|182379864|gb|EDT77343.1| DNA integration/recombination protein [Clostridium perfringens NCTC
           8239]
          Length = 338

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 100/220 (45%), Gaps = 13/220 (5%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD- 139
           Q I   +L   +  IK F K+    K   ++    ++ +K S       N KQ +T+ + 
Sbjct: 99  QPISLCTLDSYVGTIKMFFKWCVDNKYLKQNPTNKIKRIKFSR------NPKQEVTIDEF 152

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDK 196
           N LL     T + + R+  I+ LL   G+RI E L L   ++     T+ I     KG K
Sbjct: 153 NKLLQNLDLTLFSEYRDYVIIQLLLDTGMRIGECLELKEDDVDIRNKTIFISAEIAKGRK 212

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R V    ++ +  LE + L   D  +  +  LF   RG       F++++R   +   +
Sbjct: 213 DRYV-FFSNIMQRTLEKW-LIYKDRYVGSEY-LFVTNRGSKYQIHSFEKHMRNYLKRARI 269

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
               T HTLR++FA   L +GGD+ ++  +LGH  +  T+
Sbjct: 270 DKKITPHTLRNNFAKRFLMSGGDIYTLSKLLGHSSVRVTE 309


>gi|288927761|ref|ZP_06421608.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330595|gb|EFC69179.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 410

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 16/148 (10%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            ++ C  GL   +  +LTP+NI  +DD+  +  + +   +    LL  + K I+E Y   
Sbjct: 249 FVFSCFTGLAYIDVANLTPENIVTLDDKQWIMTKRQKTSVATNVLLLDIPKNIIEKYSGK 308

Query: 218 PF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
            + D  L    P+    R           Y++++    G+    T H  RH+FAT  LS 
Sbjct: 309 TYRDGKL---FPMLTNQRTNS--------YLKEIADICGIKKDLTFHMARHTFATMSLSK 357

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           G  + S+  +LGH  + TTQIY  + +K
Sbjct: 358 GVSMESVSKMLGHTNIKTTQIYARITNK 385


>gi|329961823|ref|ZP_08299837.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328531263|gb|EGF58107.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 394

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 73/150 (48%), Gaps = 20/150 (13%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI---VPLLPSVRK---AIL 211
           A L+  Y  G+R S+ +SLTP NI++      +  K  K      +PL     K    IL
Sbjct: 237 AFLFCCYA-GMRYSDFISLTPDNIVEIHKETWLIYKSVKTNTEVRLPLYLLFEKKGLVIL 295

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           E Y         NIQ   F  +R    N  V +  I  L R  GL    + HT RH+ AT
Sbjct: 296 EKYQD-------NIQD--FFHLRD---NSNVNKDLI-ILARLAGLSKKISFHTARHTNAT 342

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            L+ NG ++ ++Q +LGH  + TTQ+YTNV
Sbjct: 343 LLIYNGVNITTVQKLLGHKSVKTTQVYTNV 372


>gi|223369806|gb|ACM88772.1| integrase [uncultured bacterium]
          Length = 161

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 31/41 (75%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTH 161


>gi|301308115|ref|ZP_07214069.1| integrase [Bacteroides sp. 20_3]
 gi|300833585|gb|EFK64201.1| integrase [Bacteroides sp. 20_3]
          Length = 411

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 143/333 (42%), Gaps = 41/333 (12%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
            +GN   ++   +LL +R N      +    +  T+ +Y    R    F+   TE K++ 
Sbjct: 100 FQGNAGMQMTLLKLL-DRHNEEMKARVGVDRAPTTMSTYVYTRRTLAEFIK--TEFKVSD 156

Query: 61  QTIRQLSYTEIRAF----ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
               QL+   IR +    + K+   K+   +++  LS +K   +   K   + + +  + 
Sbjct: 157 LAFGQLNEQFIRDYQDFCLEKK---KLAMETVRHYLSILKKICRIAYKEGHSEKYHFCHF 213

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL---YLLYGC--GLRIS 171
           +  K+  + P+AL+ +    L D          +  + R S ++     L+ C  G   +
Sbjct: 214 KLPKQKETTPKALSRENFEKLRD---------LEIPEKRRSHVITRDLFLFACYTGTAYA 264

Query: 172 EALSLTPQNIM-DDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           +A+S+T +N+  DD+ +L ++    K D +  V LLP     I +Y D        + ++
Sbjct: 265 DAVSITRENLFQDDEGSLWLKYRRKKTDYLGRVKLLPEALALIGKYRD--------DTRI 316

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
            LF      P +    +  ++ LR   GL      H  RHSF T  L+ G  + SI  ++
Sbjct: 317 TLF-----PPQDYHTLRANMKSLRLMAGLSQDLVYHMARHSFGTLTLTAGIPIESIARMM 371

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           GH  + +TQ+Y  V  +     M  + ++  P+
Sbjct: 372 GHTNIDSTQVYAQVTDRKISSDMDRLMERRKPA 404


>gi|300772355|ref|ZP_07082225.1| integrase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300760658|gb|EFK57484.1| integrase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 413

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 80/166 (48%), Gaps = 15/166 (9%)

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQ-GKGDK 196
           VLL+ S   + + + +   ++  Y  GL   +  +LTP+NI   +D +  L  +  K D 
Sbjct: 238 VLLNKSFSIERLQSVSDMFIFSCY-TGLAYIDIFNLTPENISKGIDGKDWLTTKRQKTDT 296

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
              VPLLP     + +Y      + N  I    F  I  + +N      Y++++    G+
Sbjct: 297 TVRVPLLPEASDLLKKYRGHPVAEANGTI----FPVISNQRMNG-----YLKEIAEICGI 347

Query: 257 PLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             + T H  RH+FAT + LSNG  + S+  +LGH  + TTQIY  V
Sbjct: 348 NKNLTFHLARHTFATTVTLSNGVPIESVSKMLGHTSIRTTQIYAKV 393


>gi|41406204|ref|NP_959040.1| hypothetical protein MAP0106c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41394552|gb|AAS02423.1| hypothetical protein MAP_0106c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 343

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 78/178 (43%), Gaps = 41/178 (23%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--------------QGKGDKIRIV 200
           R++ +  ++YG GLRISE   L   ++  +     +              +G   K R V
Sbjct: 158 RDTTMFKVMYGWGLRISELCRLDLADMYRNPHAPELGQCGFLHVRYGKASRGSPPKRRTV 217

Query: 201 P-LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-------------PGVFQRY 246
           P L+P   +A+L+Y +        NI+ PL+   + + L               G F   
Sbjct: 218 PTLMPWAAEALLDYVN--------NIR-PLYEPGQKQALWLTERRSQVKVRTLTGTFD-- 266

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              +R  +GL    T H  RHSF +H+  +G D R +Q I GH   STT IYT+V  +
Sbjct: 267 --DIRDEVGLDRKLTPHCFRHSFISHMTEDGVDPRFLQEISGHRFASTTGIYTHVTGE 322


>gi|304382547|ref|ZP_07365042.1| integrase [Prevotella marshii DSM 16973]
 gi|304336378|gb|EFM02619.1| integrase [Prevotella marshii DSM 16973]
          Length = 406

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 135/297 (45%), Gaps = 49/297 (16%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + + I+R L    L++Y+      L  L  Y ++K  +  I  LS  + +AFI       
Sbjct: 123 ERIGIDRALKTFKLRTYQ------LSLLREYVQKKHKVSDI-PLSQLD-KAFIEGFEYYL 174

Query: 83  IGDRSLKRS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             DR LKRS     +S +++ ++   K+ +      L   + ++    PR++ +++   +
Sbjct: 175 TIDRRLKRSSISSTVSTLQTIVRMAVKKGVLDFYPFLGY-SYERPKGEPRSITQEELEHI 233

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +D        E KW + R    L++ + C  GL IS+  +L  +NI+ ++  L I+G+  
Sbjct: 234 ID-------LEIKWENYRIVRDLFV-FSCFSGLAISDVRNLREENIVLEEGELCIKGRRM 285

Query: 196 KIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL----NPGVFQRYIR 248
           K +    V +LP  +  +  Y                 RGIR   +       V    + 
Sbjct: 286 KTKTPYRVQVLPPAQTIMNRY-----------------RGIRAGFVFDVPTTDVILNGMH 328

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQ+Y  V+S+
Sbjct: 329 YIQRNIGMETPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSE 385


>gi|253688998|ref|YP_003018188.1| integrase family protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251755576|gb|ACT13652.1| integrase family protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 335

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 23/145 (15%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I+ L    G R SEA  L    I+ ++ T   + KG+K R VP+   +R           
Sbjct: 193 IVRLCLATGARWSEAQDLKQSQILPNRVTF-TKTKGNKNRTVPISEKMRSL--------- 242

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNG 277
                   LP  RG    P     ++ +   ++R  + LP     H LRHSFA+H + NG
Sbjct: 243 --------LPKKRGALFTP----AYESFKYAIKRAGIELPSGQLTHVLRHSFASHFMMNG 290

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVN 302
           G++  +Q ILGH  ++ T  Y + +
Sbjct: 291 GNILVLQQILGHSTITMTMRYAHFS 315


>gi|332884572|gb|EGK04830.1| hypothetical protein HMPREF9456_03300 [Dysgonomonas mossii DSM
           22836]
          Length = 366

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 118/279 (42%), Gaps = 31/279 (11%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S++ L++ E +T +  + L     +   I+T   L+YT I AF    R +KIG+ S+ ++
Sbjct: 111 SEMKLRNMEYNTLKAHVTLVNKLNDFKNIKTFADLTYTNIVAFDKYMRDKKIGNISINKN 170

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
            S    ++K    +++  +S        K  N+ P  L     +  V+ +   +    K 
Sbjct: 171 HSLFNMYIKIAINKELIQKSPYDLFTPPKGKNNDPVFL----TIEEVERIKNLSGLNEKL 226

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210
              R+  +     G      ++ S     I+++Q  +R  + K D+  I+  LP  +K  
Sbjct: 227 ERTRDLFVFQCYTGMAYVDMQSFSKNDIQILNEQEIIRSSRTKTDESFILLFLPDAKKIA 286

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-----LSTTAHTL 265
            +Y          N  LP               Q+Y   L+  +  P        T+HT 
Sbjct: 287 EKY----------NYSLPKISN-----------QKYNDYLKLLIAHPEVNINKKVTSHTA 325

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           RH+FAT+LL+ G  L ++   LGH  +  TQ+Y  + SK
Sbjct: 326 RHTFATYLLNKGISLETVSKTLGHSNIKQTQLYARILSK 364


>gi|254774453|ref|ZP_05215969.1| phage integrase family protein [Mycobacterium avium subsp. avium
           ATCC 25291]
 gi|254777680|ref|ZP_05219196.1| phage integrase family protein [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 357

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 26/211 (12%)

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
            G K FL ++ K    +   I     LK    LPR L+  +   ++D             
Sbjct: 132 GGWKPFLHHISKGAPRSRRVI----ALKAPKKLPRVLSPDEVQAILDGCGR--------- 178

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLR-------IQGKGDKIRIVPLL 203
             R+  +  +LY  G+RI EAL L   +I   + + T+R        + K   +R +P+ 
Sbjct: 179 -LRDRLLFAVLYDTGMRIGEALGLRHNDIAAAEHEVTVRRRDNANGARAKSQTVRTIPVS 237

Query: 204 PSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            ++ +   +Y      DL+ + + + L+   +G PL        +R+LRR  G+      
Sbjct: 238 SALIRLFADYLHSEYGDLDSDYVFVNLWGRPQGHPLTYAAVYDLVRRLRRRTGIDFDP-- 295

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           H LRH+ AT LL +G  +  +  +LGH  ++
Sbjct: 296 HWLRHTAATRLLRDGVSIEVVAHLLGHAHVA 326


>gi|189463399|ref|ZP_03012184.1| hypothetical protein BACCOP_04118 [Bacteroides coprocola DSM 17136]
 gi|189429828|gb|EDU98812.1| hypothetical protein BACCOP_04118 [Bacteroides coprocola DSM 17136]
          Length = 385

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 112/257 (43%), Gaps = 45/257 (17%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL-KYLKKRKITTESNILNMRNLK 120
           T +Q+ Y  + +F    + +K+G  ++ + L  I++ + + +++  I  E +      +K
Sbjct: 143 TFKQMDYKLLLSFEQFMKNKKLGINTIAKHLRHIRTIINEAVRQGIIAKEDSPFTEYKIK 202

Query: 121 KSNS-----LPRALNEKQALTLV--DNVLLHTSHETKWIDARNSAILYLLYGC--GLRIS 171
            + S     LP  L++ + + L    N L HT      +DA        L+ C  GLR S
Sbjct: 203 TTESHHTYLLPEELDKLEHINLSRKKNTLRHT------LDA-------FLFCCYTGLRYS 249

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-------SVRKAILEYYDLCPFDLNLN 224
           + +S+  QN++     L +  K  K   V  LP          + +  Y D+  F     
Sbjct: 250 DFISMKKQNLIQTDKELWLVFKSQKTGTVTQLPLGYLFQGKAIRILYHYPDIEEF----- 304

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
                      KP N  V +  IR + +  G+    + HT RH+ AT L+  G  L ++Q
Sbjct: 305 --------FHIKP-NASVNKELIR-IGKLAGITKHFSFHTARHTNATLLIYKGVQLSTVQ 354

Query: 285 SILGHFRLSTTQIYTNV 301
            +LGH  + TTQ+Y  V
Sbjct: 355 KLLGHRNIKTTQVYGEV 371


>gi|299536693|ref|ZP_07050004.1| transposition regulatory protein TnpA [Lysinibacillus fusiformis
           ZC1]
 gi|298727873|gb|EFI68437.1| transposition regulatory protein TnpA [Lysinibacillus fusiformis
           ZC1]
          Length = 373

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 103/224 (45%), Gaps = 43/224 (19%)

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           S  KSFL ++ K K     +I N+  LK+       L ++Q    V  +L  T+      
Sbjct: 143 SHYKSFLHHVNKDK----PSIRNILKLKEPRRKVDTLTKEQ----VQQILEATT------ 188

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV--------PLLP 204
           + R+  ++ LL+  GLRI EAL+L  ++ + D       GKG +IR+V         +L 
Sbjct: 189 NIRDRFLIQLLFETGLRIGEALALFMEDFIFDH------GKGHRIRLVDRGELENGAMLK 242

Query: 205 S------VRKAILEYYD------LCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLR 251
           +      V +++++ YD      L   +L+ N      RG   GKP+     +   ++L+
Sbjct: 243 TGEREIYVSQSLMDLYDDYLYEVLDELELDTNFVFVKLRGKDVGKPMEYWNVESLFKRLK 302

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           +  G+ L    H  RH+ AT       D++ +Q  LGH ++ TT
Sbjct: 303 KKTGINLH--PHLFRHTHATIYYQKTKDIKQVQERLGHSQIQTT 344


>gi|228925131|ref|ZP_04088241.1| Phage integrase [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228834470|gb|EEM79999.1| Phage integrase [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 360

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 127/295 (43%), Gaps = 57/295 (19%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T Q Y  D   FL ++      K TI TI++LS+ E+  +  +  ++K    +L++ 
Sbjct: 75  SERTKQQYLHDLSHFLRYI------KETIGTIQELSHNEMEIYFYEL-SKKYASTTLRKK 127

Query: 92  LSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVD-----NVLLH 144
            + ++ FLKY+      ++  S+ L   ++KK   + R L  ++   ++D     N  ++
Sbjct: 128 KTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLYPEEVTQILDELKKSNYFVY 187

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIV 200
           T+              +LL   GLRI E  +    +++   S     LR+ GKG+KIR V
Sbjct: 188 TA-------------FFLLTTTGLRIEEIATAKWADLVFHSSLNAYLLRVVGKGNKIREV 234

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQ-----LPLFRG--IRGKPLNPGV----------F 243
            +      AI     L      L+       LP   G   R   L+  V          F
Sbjct: 235 RIFEDTLDAICHVRRLRKQTTELDASSSSAFLPKADGSNYRADYLSSLVAKKIEETNLAF 294

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            RY RQ R         T HT RH  A +L+  G +L+ I+  LGH  + TT+ Y
Sbjct: 295 LRY-RQDR--------ITPHTCRHFMANYLMEKGVELKKIRDYLGHESIMTTERY 340


>gi|223369808|gb|ACM88773.1| integrase [uncultured bacterium]
          Length = 161

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 31/41 (75%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTH 161


>gi|223369790|gb|ACM88764.1| integrase [uncultured bacterium]
          Length = 163

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 31/41 (75%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T HT RHSF THLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 122 TCHTFRHSFTTHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|330824742|ref|YP_004388045.1| integrase family protein [Alicycliphilus denitrificans K601]
 gi|329310114|gb|AEB84529.1| integrase family protein [Alicycliphilus denitrificans K601]
          Length = 419

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 124/284 (43%), Gaps = 29/284 (10%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           E+GL + ++ +Y    R F  +LA   +  I++  +     TE   FI+ R  + +    
Sbjct: 138 EKGLRQTSIHNYTFTLRPFDSYLA---QAGISLDKLTPACITE---FINDR-AKTLHKSG 190

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRN--LKKSNSLPRALNEKQALTLVDNVLLHT 145
           +  +   ++ FL+YL +  I     + ++    + +  S+PRA+       L+ ++   +
Sbjct: 191 MLNTAEALRVFLRYLHREGIIANDLVRSVPRGRVYRQASIPRAIGWADVERLLASIDRRS 250

Query: 146 SHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
                 +  R+ AIL LL   GLR  E  AL L   +    Q  + ++  G   R  PL 
Sbjct: 251 D-----LGKRDYAILTLLTSYGLRAREIVALCLDDLDWAHGQIGIPMRKGGHSTRY-PLS 304

Query: 204 PSVRKAILEYYDLCPFDLN-----LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            +V +AI+ Y  +   D++     L ++ P        P+N       +    R +G+ +
Sbjct: 305 AAVGEAIIAYLHVRRTDIDDRRIFLTVRSPY------TPMNHWTVSSMVAGHLRSIGIQV 358

Query: 259 S-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +   +HTLRHS   HL+      + I   +GH   ++T +Y  V
Sbjct: 359 ARAGSHTLRHSCVQHLVEADLPFKVIGDYVGHRHPASTLVYGKV 402


>gi|227523734|ref|ZP_03953783.1| integrase [Lactobacillus hilgardii ATCC 8290]
 gi|227089049|gb|EEI24361.1| integrase [Lactobacillus hilgardii ATCC 8290]
          Length = 305

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 136/290 (46%), Gaps = 34/290 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI---RAFI 75
           Q+W+ NL  +  + ++T + YE   RQ ++ LA      + +  + +L+Y ++    A  
Sbjct: 12  QDWM-NLYKKDAVREVTYRKYEMTYRQ-IVSLA----PDLRMCELSRLTYQKLLNDYAKT 65

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            +R+T     R +K SL  I +  + + +R  T ++ I   +  K      + LN+ +  
Sbjct: 66  HERQTVMDFHRHIKSSL--IDALEEGILERDPTRKAII---KGKKPGPHKTKFLNQHEVQ 120

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            ++D++ L       W        + L+   GLR SEAL++TP +    + TL I    D
Sbjct: 121 LMLDSLSLDAG--VNW-----DYFILLITKTGLRFSEALAITPNDFDFARQTLNINKTWD 173

Query: 196 -KIRIVPLLP-----SVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRY 246
            K R     P     S+RK  L++  +  F      L+   P+F  +R K  N  +   Y
Sbjct: 174 YKSRQAGFAPTKNFSSMRKIQLDWQTVIQFSQLTKELSEDKPIF--VRSKVYNDTI-NHY 230

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           + +L +  G+P+  + H LRH+ A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 231 LERLCKKSGIPI-ISVHGLRHTHASLLLYAGVSIASVARRLGHSNMNTTQ 279


>gi|215408006|emb|CAS02330.1| integron integrase [uncultured bacterium]
          Length = 157

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 4/59 (6%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            F+R + Q     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+
Sbjct: 103 AFKRAVEQA----GITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 157


>gi|223369794|gb|ACM88766.1| integrase [uncultured bacterium]
          Length = 163

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 31/42 (73%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T H  RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHIFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|221196341|ref|ZP_03569388.1| phage integrase [Burkholderia multivorans CGD2M]
 gi|221203015|ref|ZP_03576034.1| phage integrase [Burkholderia multivorans CGD2]
 gi|221176949|gb|EEE09377.1| phage integrase [Burkholderia multivorans CGD2]
 gi|221182895|gb|EEE15295.1| phage integrase [Burkholderia multivorans CGD2M]
          Length = 421

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 79/192 (41%), Gaps = 34/192 (17%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSVR 207
           R   +  LLY  GLRI+EA   T             D+  L + GKG + R+VP    + 
Sbjct: 232 RARWVFTLLYLGGLRITEAAETTMGRFFCRRDASGRDRWWLDVTGKGGRRRLVPATDELM 291

Query: 208 KAILEY---YDLCPF---DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST- 260
             +  Y   + L P    D +  + LP   G   +PL      R ++Q+ R+    L T 
Sbjct: 292 TELARYRRAHGLAPLPVADEDTPLVLPF--GQARRPLTRAALHRIVKQVFRHAADRLRTQ 349

Query: 261 --------------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
                         +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +    
Sbjct: 350 GDAGAEQARVLEQASAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHADD--- 406

Query: 307 GDWMMEIYDQTH 318
            DW     ++ H
Sbjct: 407 -DWRHRETEEKH 417


>gi|196048146|ref|ZP_03115323.1| phage integrase family protein [Bacillus cereus 03BB108]
 gi|196020883|gb|EDX59613.1| phage integrase family protein [Bacillus cereus 03BB108]
          Length = 348

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 126/290 (43%), Gaps = 47/290 (16%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T Q Y  D   FL ++      K TI TI++LS+ ++  +  +  + K    +L+R 
Sbjct: 62  SERTKQQYLHDLSHFLRYI------KETIGTIQKLSHNDMEIYFYEL-SNKYAATTLRRK 114

Query: 92  LSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
            + ++ FLKY+      ++  S+ L   ++KK   + R L  ++   ++D        E 
Sbjct: 115 KTVVQQFLKYVYDNNGLSDNFSSRLKKVSIKKEELVNRDLYPEEVTQILD--------EL 166

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPS 205
           K  +     I +LL   GLRI E  +    +++   S     LR+ GKG+K R V +   
Sbjct: 167 KKSNYFVYTIFFLLTTTGLRIEEIATAKWADLVFHSSLNAYLLRVVGKGNKSREVRIFED 226

Query: 206 VRKAILEYYDLCPFDLNLNIQ-----LPLFRGI--RGKPLNPGV----------FQRYIR 248
              A+     L    + L++      LP   G   R   L+  V          F RY R
Sbjct: 227 TLYALYHVRSLRKQTIELDVSNTSAFLPKADGTNYRADYLSSLVAKKIEETNLDFLRY-R 285

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           Q R         T HT RH  A +L+  G +L+ I+  LGH  + TT+ Y
Sbjct: 286 QDR--------ITPHTCRHFMANYLMEKGIELKKIRDYLGHESIMTTERY 327


>gi|157149591|ref|YP_001456672.1| phage integrase family site specific recombinase [Campylobacter
           concisus 13826]
 gi|112800190|gb|EAT97534.1| site-specific recombinase, phage integrase family [Campylobacter
           concisus 13826]
          Length = 329

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 97/225 (43%), Gaps = 23/225 (10%)

Query: 92  LSGIKSFLKYLKKR--KITTESNILNMRNL--KKSNSLPRALNEKQ---ALTLVDNVLLH 144
           L+ +K F KY+     K+     IL+   +  KK N     + E +    L  V+N L+ 
Sbjct: 100 LTILKIFFKYITNNNDKLIDLEKILDNYKIAKKKVNKFENFMKESERDKILDYVENRLVK 159

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS----TLRIQGKGDKIRIV 200
                   + R+S ++ L+   GLRISEAL+L   +  +        + I  KG + +  
Sbjct: 160 KPEYRYNKNYRDSLLIKLMLKSGLRISEALNLKFCDFQESDDGEFYDINILAKGGEYQTA 219

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            +  S  KA         F+  L+I LP       G   KP++       + ++ R  G+
Sbjct: 220 YIAKSYIKA--------DFERLLSINLPENYIFTSGCSDKPISRQNVYSLLARIYRKCGI 271

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                 H LRHSFA +++    +L  IQ  L H ++ TT IY + 
Sbjct: 272 VNKRGCHILRHSFAMNMVEKNTNLGVIQKALRHKKIQTTMIYADA 316


>gi|119714032|ref|YP_919174.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119525941|gb|ABL79311.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 375

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 81/174 (46%), Gaps = 23/174 (13%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQ------GKGDKIRIVPLLP 204
           AR+     L    GLRI+E + L   +   +  T   L ++      G+G K+RIVP + 
Sbjct: 169 ARDYLAASLWRRIGLRINETVMLDVGDWHPELGTHGKLHVRHGKGSRGRGAKVRIVPAID 228

Query: 205 SVRKAILEYY--DLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG----- 255
            V  A+LE++  D+ P   D   +   PL    R  P+     +     LR  +G     
Sbjct: 229 EV-DALLEWWLTDVRPQFGDDYEDPNAPLLPSERRDPMTGHCTRIGAEALRTGMGEAVGR 287

Query: 256 -LPLST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            LP  T   + H LRH  A+HL   G  L++IQ +LGH  LSTT  Y +V S +
Sbjct: 288 WLPGWTGRLSPHVLRHYCASHLYEQGMTLKAIQELLGHGWLSTTTQYIHVRSTH 341


>gi|223369802|gb|ACM88770.1| integrase [uncultured bacterium]
          Length = 163

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 31/42 (73%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSFATHLL  G D+R++Q +LGH  +  TQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKPTQIYTHV 162


>gi|319644101|ref|ZP_07998650.1| hypothetical protein HMPREF9011_04253 [Bacteroides sp. 3_1_40A]
 gi|317384343|gb|EFV65312.1| hypothetical protein HMPREF9011_04253 [Bacteroides sp. 3_1_40A]
          Length = 381

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 96/218 (44%), Gaps = 21/218 (9%)

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R+L+G  +     KK K    + +     ++K  S+   +  ++   L+D  + H  +E 
Sbjct: 168 RALNGALNSAVRKKKMKANPFNELEKSEKIRKPESMRSYMTIEEVQALIDTPMPHEEYEI 227

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSV 206
                   A L+  + CGLRIS+ + L   ++  D+   R+     K +    +PL P  
Sbjct: 228 -----VKCAYLFSCF-CGLRISDIIKLKWSDVFVDRGQYRLAVSMKKTKEPIYLPLSPEA 281

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            K + E       D N+   LP    IR +          ++   +  G+    + HT R
Sbjct: 282 LKWMPERGGKSSED-NV-FDLPSANTIRMQ----------LKPWAKAAGISKRFSYHTSR 329

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           H+FAT +L+ G DL ++  +LGH  +  TQ+Y  + +K
Sbjct: 330 HTFATMMLTLGADLYTVSKLLGHADVKMTQVYAKIINK 367


>gi|313114164|ref|ZP_07799716.1| site-specific tyrosine recombinase XerC family protein
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623573|gb|EFQ06976.1| site-specific tyrosine recombinase XerC family protein
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 401

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 133/325 (40%), Gaps = 76/325 (23%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFL-----------------------AFYTEEK 57
           +++ LE+  G S  T  SY CD R F  F+                       AF+    
Sbjct: 26  YVRYLEVIAGKSANTAFSYYCDLRGFSRFMKRRRGLVPEDSEMKDIDPKGLDTAFWA--S 83

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN-ILNM 116
           +T + I +  Y     F+++    K    S  R L+ +  F  YL  +     ++    +
Sbjct: 84  VTKEDIYEYLY-----FLNRECGNK--KSSTARRLASLHGFYDYLVNQVNRLGADPTAAI 136

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              K+   LP+ L  +Q++ L     L ++        R+  ++ L   CG+R++E + +
Sbjct: 137 HPPKQDKVLPKYLTAEQSMEL-----LESTQTQSDFPERDYCMVTLFLNCGMRLAELVGM 191

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
              +I  +   +R+ GKG K R+V L  +  +A                 L L+ G R  
Sbjct: 192 NLDDIDLENRQIRLFGKGHKERMVYLNDACMEA-----------------LRLYLGKRNT 234

Query: 237 -----PLNPGVF----------QRYIRQL----RRYLGLPLSTTAHTLRHSFATHLLSNG 277
                P    VF           R + QL     +  GL   +T H LRH+ AT +   G
Sbjct: 235 MEGLLPQEKAVFITRRRKERISNRRVEQLVTGAMKAAGLKGFST-HKLRHTAATLMYQTG 293

Query: 278 G-DLRSIQSILGHFRLSTTQIYTNV 301
             D+ +++ +LGH  +STTQIYT++
Sbjct: 294 NVDILTLKQLLGHSNVSTTQIYTHL 318


>gi|318603813|emb|CBY25311.1| integrase [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 284

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 104/242 (42%), Gaps = 30/242 (12%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           + + QL+  E+    S+R    I   ++ R L  +      L K +  +  N L+     
Sbjct: 54  KAVSQLTKRELMEHRSQRLADGISAATINRDLYRLSGMFSALIKIEEFSGQNPLH----- 108

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LP    +   +T +D   ++        D R  A+L L    G R  E  +LT   
Sbjct: 109 ---GLPPLAEKNPGMTFLDAEEINRLLAVLSGDERLIALLCL--STGGRWGEVSTLTAAQ 163

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           +++++ T  ++ K  K R +P+   + K           ++  N    LF+      ++ 
Sbjct: 164 VVNNRVTF-LETKNGKKRTIPISAELEK-----------EVKTNASRKLFK------VDY 205

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           G F   +R ++    LP     H LRH+FA+H + NGG++ ++Q ILGH  +  T  Y +
Sbjct: 206 GKFCETLRMVKP--DLPRGQATHVLRHTFASHFMMNGGNIIALQQILGHANIQQTMAYAH 263

Query: 301 VN 302
           ++
Sbjct: 264 LS 265


>gi|227508549|ref|ZP_03938598.1| integrase [Lactobacillus brevis subsp. gravesensis ATCC 27305]
 gi|227191881|gb|EEI71948.1| integrase [Lactobacillus brevis subsp. gravesensis ATCC 27305]
          Length = 305

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 136/290 (46%), Gaps = 34/290 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI---RAFI 75
           Q+W+ NL  +  + ++T + YE   RQ ++ LA      + +  + +L+Y ++    A  
Sbjct: 12  QDWM-NLYKKDAVREVTYRKYEMTYRQ-IVSLA----PDLRMCELSRLTYQKLLNDYAET 65

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            +R+T     R +K SL  I +  + + +R  T ++ I   +  K      + LN+ +  
Sbjct: 66  HERQTVMDFHRHIKSSL--IDALEEDILERDPTRKAII---KGKKPGPHKTKFLNQHEVQ 120

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            ++D++ L       W        + L+   GLR SEAL++TP +    + TL I    D
Sbjct: 121 LMLDSLSLDAG--VNW-----DYFILLITKTGLRFSEALAVTPNDFDFARQTLNINKTWD 173

Query: 196 -KIRIVPLLP-----SVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRY 246
            K R     P     S+RK  L++  +  F      L+   P+F  +R K  N  +   Y
Sbjct: 174 YKSRQAGFAPTKNFSSMRKIQLDWQTVIQFSQLTKELSEDKPIF--VRSKVYNDTI-NHY 230

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           + +L +  G+P+  + H LRH+ A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 231 LERLCKKSGIPI-ISVHGLRHTHASLLLYAGVSIASVARRLGHSNMNTTQ 279


>gi|294778532|ref|ZP_06743955.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294447794|gb|EFG16371.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 403

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 71/151 (47%), Gaps = 20/151 (13%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYY 214
            L+GC  GL   +  +LT   I  MD      I  +  K R+   VPL+   ++ I  Y 
Sbjct: 224 FLFGCFTGLSYIDIKTLTHDKIQRMDFDGEEWIITRRTKTRVSSNVPLMEIAKELIERYR 283

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL- 273
            L   DL      P+       P N  V   +++Q+ +  G+      H  RH+FAT + 
Sbjct: 284 GLAGGDL----VFPM-------PSNS-VCNTHLKQIAKACGIHKEIGFHLSRHTFATTVY 331

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           L NGG + ++  ILGH  +STTQIY  V ++
Sbjct: 332 LCNGGTIEALSKILGHKHISTTQIYAEVTNR 362


>gi|291522348|emb|CBK80641.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 350

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 133/301 (44%), Gaps = 30/301 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFL----AFYTEEKI---TIQTIRQLSYTEIRA 73
           + ++LEI +  +  T ++Y  D   F  FL     ++ ++ I    I+ +  ++  ++  
Sbjct: 32  YFRSLEIRKSTN--TRKNYAYDLGVFFYFLKTNNPYFKDKDIHTLPIEVLDMITAMDVEE 89

Query: 74  FISKRRT-QKIG------DRSLKRSLSGIKSFLKY-LKKRKITT----ESNILNMRNLK- 120
           ++S   +  K G      +    R LS +KSF  Y  KK  I T    + ++  ++N   
Sbjct: 90  YLSYLESYTKDGKLYTNREEGKARKLSSLKSFYDYYFKKNLIRTNPPRQVDVPKIKNKNI 149

Query: 121 ---KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
                N + + L+E ++   +    L +  +TK    R+ AIL LL G G+R+SE + L 
Sbjct: 150 IRLDPNEIAQLLDEAESGEKLSGRQLASHEKTK---VRDVAILTLLLGTGIRVSECVGLN 206

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRG 235
            +++  +   +RI  KG    ++     V +A+  Y +      +     +  LF  +  
Sbjct: 207 LEDVDFNNGAIRIIRKGGNEALIYFGDEVSQALEAYMNGSRKTAEPAAGHEEALFISLNK 266

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             +     +R +++  R +      T H LR +F T L    GD+  +   LGH  ++TT
Sbjct: 267 TRITTRSVERLVKKYSRLVTTVKKITPHKLRSTFGTALYQETGDIYLVADTLGHKDVNTT 326

Query: 296 Q 296
           +
Sbjct: 327 K 327


>gi|210610698|ref|ZP_03288579.1| hypothetical protein CLONEX_00769 [Clostridium nexile DSM 1787]
 gi|210152331|gb|EEA83337.1| hypothetical protein CLONEX_00769 [Clostridium nexile DSM 1787]
          Length = 328

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 111/251 (44%), Gaps = 25/251 (9%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK----SFLKYLKKRKITTESNILNM 116
           +T+  +   ++R ++S+ + +K    S K ++  I+    SF  +L+      +S +  +
Sbjct: 87  KTVCTIETEDLRTYLSRYQAEK---ESSKVTIDNIRRIFSSFFAWLEDEDYIIKSPVRRI 143

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             +K ++ +     ++Q  T+ DN            + R+ A++ +L   G+R+ E + L
Sbjct: 144 HRIKSASVIKETYTDEQLETMRDNC----------DNLRDLALIDILASTGMRVGELVLL 193

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG- 235
              +I  ++    + GKGDK R+V      +  +  Y D    + N      LF  ++  
Sbjct: 194 NRDDISFEERECVVFGKGDKERMVYFDARTKLHLQNYLDSRTDNEN-----ALFVSLKAP 248

Query: 236 -KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            K +  G  +  +R++ + L +      H  R + AT  +  G  +  +Q +LGH R+ T
Sbjct: 249 YKRMKIGGIEVRLREMGKRLNIE-KVHPHKFRRTLATVAIDKGMPIEQLQKLLGHQRIDT 307

Query: 295 TQIYTNVNSKN 305
           T  Y  V   N
Sbjct: 308 TLQYAMVKQSN 318


>gi|189461054|ref|ZP_03009839.1| hypothetical protein BACCOP_01701 [Bacteroides coprocola DSM 17136]
 gi|265753998|ref|ZP_06089353.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|189432144|gb|EDV01129.1| hypothetical protein BACCOP_01701 [Bacteroides coprocola DSM 17136]
 gi|263235712|gb|EEZ21236.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 376

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 17/139 (12%)

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSVRKAILEYYDLCPFDLN 222
           CGLRIS+ + L  +N+  D    R+     K +    +PL     K + E  D    D  
Sbjct: 235 CGLRISDIVGLKWKNVFVDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPEREDKAADDHV 294

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
            ++              P    +Y++      G+    T HT RH+FAT +L+ G DL +
Sbjct: 295 FSL--------------PSNINQYLKPWAEAAGITKRFTFHTARHTFATMMLTLGADLYT 340

Query: 283 IQSILGHFRLSTTQIYTNV 301
           +  +LGH  +  TQ+Y  +
Sbjct: 341 VSKLLGHTSVRMTQVYAKI 359


>gi|146301452|ref|YP_001196043.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146155870|gb|ABQ06724.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 305

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 71/157 (45%), Gaps = 12/157 (7%)

Query: 158 AILYLLYGCGLRISE--ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
           A+L + YGCGLR SE  AL L    +      +R  GK  K R VP+  +V   + +Y  
Sbjct: 144 ALLSVAYGCGLRRSEISALDLKDVKLATGMVVVR-SGKNSKRREVPMSDTVMGYLKKYIQ 202

Query: 216 ------LCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                 L   +          +G R  G+ LN  + ++ I Q + +  +    T H LRH
Sbjct: 203 EERSQRLAGKNQTEEAFFINSKGRRSTGENLND-ILKKMIEQTKNFELIQKDITLHCLRH 261

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           S A HL  N   +  I+  LGH  ++TT IY   N K
Sbjct: 262 SIANHLAENNAGIDFIRRFLGHSDINTTYIYALKNKK 298


>gi|304382835|ref|ZP_07365318.1| integrase [Prevotella marshii DSM 16973]
 gi|304336020|gb|EFM02267.1| integrase [Prevotella marshii DSM 16973]
          Length = 410

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 100/204 (49%), Gaps = 28/204 (13%)

Query: 109 TESNILNMRNLKKSNS-LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC- 166
           TE  IL+   ++K ++ +PRAL+ K +   + ++ L+  +E +   ARN      L+ C 
Sbjct: 212 TERPILDFVKIEKGDAKMPRALD-KASFEKLQSLKLN-EYEKELETARN----LFLFSCY 265

Query: 167 -GLRISEALSLTPQNI-MDDQ--STLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
            G+   + + L  +++ +DD+  S L+ Q  K D +  V LLP   + I+E Y     D 
Sbjct: 266 TGVSYCDMMCLNQEHLFLDDEGKSWLKFQRQKTDSLSRVKLLPEA-EHIIEKYSSEERD- 323

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
                  LF  I      P    RY+ + L+   G+ +  TAH  RHSF T  L  G  +
Sbjct: 324 ------TLFPNI------PYTTYRYLLKGLQHRAGITIPITAHLARHSFGTLTLEAGIPI 371

Query: 281 RSIQSILGHFRLSTTQIYTNVNSK 304
            SI  ++GH  +++TQIY  +  +
Sbjct: 372 ESIAKMMGHSSIASTQIYAQITDQ 395


>gi|261879699|ref|ZP_06006126.1| integrase [Prevotella bergensis DSM 17361]
 gi|270333720|gb|EFA44506.1| integrase [Prevotella bergensis DSM 17361]
          Length = 406

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 143/316 (45%), Gaps = 47/316 (14%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + + I+R L    L++Y+      L  L  Y ++K  +  I  LS  + +AFI       
Sbjct: 123 ERIGIDRALKTFKLRTYQ------LSLLREYVQKKHKVCDI-PLSQLD-KAFIEGFEYYL 174

Query: 83  IGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMR-----NLKKSNSLPRALNEKQALT 136
             DR LKRS   I S L  L+   ++T +  +L+       + ++    PR++ + +   
Sbjct: 175 TIDRRLKRS--SISSALSTLQTIVRMTVKKGVLDFYPFLGYSYERPKGEPRSITQDELQK 232

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKG 194
           ++D        E +W + R    L++ + C  GL IS+  +L  +NI+ ++  L I+G+ 
Sbjct: 233 IID-------LEIEWENYRIVRDLFV-FSCFTGLAISDVRNLREENIVTEEGELCIKGRR 284

Query: 195 DKIRI---VPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
            K +    V +LP    AI+E Y      F  ++     +  G+            YI+ 
Sbjct: 285 MKTKTPYRVQVLPPAW-AIMERYRGKRAGFVFDVPTTDIILNGMH-----------YIQ- 331

Query: 250 LRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
             R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQ+Y  V+S+    
Sbjct: 332 --RNIGMETPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHR 389

Query: 309 WMMEIYDQTHPSITQK 324
            M  I  +   + T K
Sbjct: 390 DMQAIQQRIQDTFTLK 405


>gi|58577494|emb|CAG29647.1| transposase A [Staphylococcus lentus]
          Length = 361

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 108/245 (44%), Gaps = 36/245 (14%)

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           + T    ++++    K  D S +      K FL ++ K + + + NIL +R  KK   L 
Sbjct: 112 AVTSFLEYLNRTENFKAIDMSKEARGRNFKGFLHHISKGR-SYKKNILKLRVKKK---LV 167

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDD 184
           + L   Q   +++    HT         R+  ++ L+Y  GLRI EALSL  ++I   D+
Sbjct: 168 QVLEHGQVKAIIEAC--HTK--------RDKLLIMLMYEGGLRIGEALSLRIEDISTWDN 217

Query: 185 QSTLRIQGKGDKIRIVPLLP----SVRKAILEYY----------DLCPFDLNLNIQLPLF 230
           Q  +R +   +    + L       V K ++  Y          DL    + +N++   F
Sbjct: 218 QINIRPRDHNENGAYIKLKKERTIDVSKELMALYTDYLVHEYGEDLDHDYIFINLKDSYF 277

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
               G PL        IR+L +  G+    TAH LRH+ AT L+ +G D   +Q  LGH 
Sbjct: 278 ----GHPLKYQSVLDLIRRLGKRTGITF--TAHILRHTHATELIRSGWDGAYVQKRLGHA 331

Query: 291 RLSTT 295
            + TT
Sbjct: 332 HVQTT 336


>gi|164688222|ref|ZP_02212250.1| hypothetical protein CLOBAR_01867 [Clostridium bartlettii DSM
           16795]
 gi|164602635|gb|EDQ96100.1| hypothetical protein CLOBAR_01867 [Clostridium bartlettii DSM
           16795]
          Length = 393

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 25/236 (10%)

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN-LKKSNSLPRA---LNEKQALTLVD 139
            +R+L R  S I +  K+L  R     +NI +  N +K     P A   L+  + + ++D
Sbjct: 105 NNRALARKKSSISTLFKFLY-RNEQLPTNITDGFNPIKLPKPQPDAIKRLDIDEVMVMLD 163

Query: 140 NVL----LHTSHETKW--IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
            V     L    +  W     R+ AIL L    GLR++E   L   +    +   +I  K
Sbjct: 164 AVESGEGLTEKEKVYWEKTKLRDKAILALFVTYGLRLNELRELNISSFNFSRGEFKIYRK 223

Query: 194 GDKIRIVPLLPSVRKAILEYYDL---CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
             K  ++P+  +    +++Y +       DL  ++Q  LF  ++ K L P    R IRQL
Sbjct: 224 RGKEVLMPINKTCENVVIDYINYERPKSEDLPEDVQDALFLSLQRKRLTP----RAIRQL 279

Query: 251 -RRYLGLPLSTT------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            ++Y  + + T+       H LR + AT L+ +G  +  ++++L H  ++TTQ+Y 
Sbjct: 280 VKKYTSICMHTSRDKGYSPHKLRATAATSLIQSGFSIYDVKALLDHDNVTTTQLYA 335


>gi|240173410|ref|ZP_04752068.1| Integrase [Mycobacterium kansasii ATCC 12478]
          Length = 346

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 124/309 (40%), Gaps = 26/309 (8%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLA---FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           RGLS  T+++Y      FL +LA       E ++     +       A+++ +R      
Sbjct: 28  RGLSPKTVEAYRISLECFLDYLAEAEHIGREHVSFDRFDRPHLKGWLAWMTDQRHYTPKT 87

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA---LNEKQALTLVDNVL 142
            +L+  LS IK+FL Y     +T  +     + LK      R    L E Q   ++    
Sbjct: 88  VTLR--LSAIKAFLAYAAYEDLTLVALSQAAKALKAPAGPRRPVEYLTEAQTRAILAAFT 145

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVP 201
             T+        RN  +L LLY    R+ E   LT  ++ + +   + + GKG+K R+VP
Sbjct: 146 GQTAKSR-----RNRMLLILLYDTAARVGEITGLTLGDLRLTEPGHILLTGKGNKTRVVP 200

Query: 202 LLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGI-RGKPLN------PGVFQRYIRQLR-R 252
           L       +  Y D   P    L  + PLF  + RG+P          V ++     R +
Sbjct: 201 LTDKTIGHLHVYLDEFHPNITKLPARRPLFYSLHRGRPAELSADTVAAVLKQAAESARTQ 260

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +P +   H LR + A  L   G  L  I  +LGH   STT  +    +    D M +
Sbjct: 261 CPSIPANIHCHLLRKTKAMDLYQQGIPLPIIMRLLGHENASTTAAFYAFATL---DMMRQ 317

Query: 313 IYDQTHPSI 321
             +   P+I
Sbjct: 318 AINAATPAI 326


>gi|261343791|ref|ZP_05971436.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
 gi|282568175|gb|EFB73710.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
          Length = 329

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 19/145 (13%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
           N  +  L    G R  EA+ L   +++ ++        G K RIVP+   V   I E   
Sbjct: 181 NKKVAILCLSTGARWGEAVKLKRDHVIQNKIRFTFTKTG-KARIVPISQEVADMICEKKS 239

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
                           G+     +  +F+R+I+ ++    +PL    H LRH+FATH + 
Sbjct: 240 ----------------GMLFPRTSYHMFRRHIKTIKP--DMPLGQATHALRHTFATHFMM 281

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTN 300
           NGG + ++Q ILGH  L  T  Y +
Sbjct: 282 NGGSIITLQRILGHSTLQQTLTYAH 306


>gi|223369804|gb|ACM88771.1| integrase [uncultured bacterium]
          Length = 160

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 30/40 (75%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYT 160


>gi|160890707|ref|ZP_02071710.1| hypothetical protein BACUNI_03152 [Bacteroides uniformis ATCC 8492]
 gi|237708220|ref|ZP_04538701.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|156859706|gb|EDO53137.1| hypothetical protein BACUNI_03152 [Bacteroides uniformis ATCC 8492]
 gi|229457773|gb|EEO63494.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 431

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 71/151 (47%), Gaps = 20/151 (13%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYY 214
            L+GC  GL   +  +LT   I  MD      I  +  K R+   VPL+   ++ I  Y 
Sbjct: 252 FLFGCFTGLSYIDIKTLTHDKIQRMDFDGEEWIITRRTKTRVSSNVPLMEIAKELIERYR 311

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL- 273
            L   DL      P+       P N  V   +++Q+ +  G+      H  RH+FAT + 
Sbjct: 312 GLAGGDL----VFPM-------PSNS-VCNTHLKQIAKACGIHKEIGFHLSRHTFATTVY 359

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           L NGG + ++  ILGH  +STTQIY  V ++
Sbjct: 360 LCNGGTIEALSKILGHKHISTTQIYAEVTNR 390


>gi|149184910|ref|ZP_01863227.1| phage integrase [Erythrobacter sp. SD-21]
 gi|148831021|gb|EDL49455.1| phage integrase [Erythrobacter sp. SD-21]
          Length = 338

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 97/211 (45%), Gaps = 30/211 (14%)

Query: 23  QNLEIERGLSKLTLQSYE-CDTRQFLIFLAFYTEE---KITIQTIRQLSYTEIRAFISKR 78
           ++L  ER +S  T+++Y  C    F++ + F ++    + T   I       I AF+   
Sbjct: 14  EHLPRERAVSPHTVKTYANC----FVLLVRFASDRLKRRPTDLEIEDFGTDMIMAFLGHV 69

Query: 79  RTQKIGD-RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQAL 135
             ++    R+    L+ I+SF +Y++ R        L +R++  KK+N            
Sbjct: 70  EVERGSCVRTRNGRLAAIRSFFRYIEYRVPACLDQALRVRSIPSKKANK----------- 118

Query: 136 TLVD-------NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-ST 187
           TL+D         LL        +  R+ A+L+L Y  GLR+SE +SL  ++  D   ST
Sbjct: 119 TLIDYLDRAEIKALLDAPDPRTRLGTRDRAMLHLTYAAGLRVSELVSLQLRDFPDRSLST 178

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           + I GKG + R++PL    + A+  +  + P
Sbjct: 179 VHIMGKGRRERVLPLWKETQSALRAWLVIRP 209


>gi|223369826|gb|ACM88782.1| integrase [uncultured bacterium]
          Length = 163

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 40/64 (62%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+P   QR  R+      +    T HTLRHSFA HLL++G ++R+IQ +L H  L TT I
Sbjct: 99  LSPATLQRAFRRAVATSDIHKHATVHTLRHSFARHLLAHGTEIRTIQLLLEHRSLQTTMI 158

Query: 298 YTNV 301
           YT+V
Sbjct: 159 YTHV 162


>gi|145590241|ref|YP_001156838.1| phage integrase family protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145048647|gb|ABP35274.1| phage integrase family protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 188

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 17/182 (9%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           S  R LN ++   ++D+V       T+   ARN A+L L +  G+R++E  +L   ++++
Sbjct: 2   SQARVLNPQELRRVLDHV------ATRRHSARNRAMLLLTHYAGMRVAEVAALRINDVLN 55

Query: 184 DQSTLR-------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
             ST++        Q KG   R V L   ++K + +Y  +       +   PLF   +  
Sbjct: 56  GDSTIKGEVRLMPDQTKGKHARTVYLNERMQKELAQYIKMLKIK---DASKPLFYTQKQA 112

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
             +     +Y   L R   L    ++H+ R SF T L + G  +  ++S+ GH  +STT 
Sbjct: 113 GFSANSLTQYFFYLYRACALA-GASSHSGRRSFLTGLANKGTAIHILKSLAGHRNISTTA 171

Query: 297 IY 298
            Y
Sbjct: 172 TY 173


>gi|313157227|gb|EFR56657.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 402

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 96/218 (44%), Gaps = 21/218 (9%)

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R+L+G  +     KK K    + +     ++K  S+   +  ++   L+D  + H  +E 
Sbjct: 189 RALNGALNSAVRKKKMKANPFNELEKSEKIRKPESMRSYMTIEEVQALIDTPMPHEEYEI 248

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSV 206
                   A L+  + CGLRIS+ + L   ++  D+   R+     K +    +PL P  
Sbjct: 249 -----VKCAYLFSCF-CGLRISDIIKLKWNDVFVDRGQYRLAVSMKKTKEPIYLPLSPEA 302

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            K + E       D N+   LP    IR +          ++   +  G+    + HT R
Sbjct: 303 LKWMPERGGKSSED-NV-FDLPSANTIRMQ----------LKPWAKAAGISKRFSYHTSR 350

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           H+FAT +L+ G DL ++  +LGH  +  TQ+Y  + +K
Sbjct: 351 HTFATMMLTLGADLYTVSKLLGHADVKMTQVYAKIINK 388


>gi|253571052|ref|ZP_04848460.1| integrase [Bacteroides sp. 1_1_6]
 gi|251840001|gb|EES68084.1| integrase [Bacteroides sp. 1_1_6]
          Length = 381

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 96/218 (44%), Gaps = 21/218 (9%)

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R+L+G  +     KK K    + +     ++K  S+   +  ++   L+D  + H  +E 
Sbjct: 168 RALNGALNSAVRKKKMKANPFNELEKSEKIRKPESMRSYMTIEEVQALIDTPMPHEEYEI 227

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSV 206
                   A L+  + CGLRIS+ + L   ++  D+   R+     K +    +PL P  
Sbjct: 228 -----VKCAYLFSCF-CGLRISDIIKLKWNDVFVDRGQYRLAVSMKKTKEPIYLPLSPEA 281

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            K + E       D N+   LP    IR +          ++   +  G+    + HT R
Sbjct: 282 LKWMPERGGKSSED-NV-FDLPSANTIRMQ----------LKPWAKAAGISKRFSYHTSR 329

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           H+FAT +L+ G DL ++  +LGH  +  TQ+Y  + +K
Sbjct: 330 HTFATMMLTLGADLYTVSKLLGHADVKMTQVYAKIINK 367


>gi|329964312|ref|ZP_08301393.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328525361|gb|EGF52409.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 410

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 116/251 (46%), Gaps = 39/251 (15%)

Query: 78  RRTQKIGDRSLKRSLSG--IKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNE--- 131
           +R  K+ D  L R +SG  ++ F  YLK  K   ++ ++  M+  KK  +L  A NE   
Sbjct: 153 KRDYKVDDMLL-REVSGELVRKFDLYLKTEKHCAQNTVIRYMKCFKKVINLAIA-NEWLT 210

Query: 132 ---------------KQALTLVD-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
                          KQ L+  + N +       + ++      ++ +Y  GL   +  +
Sbjct: 211 KNPFAGIKFHEVEVNKQFLSQAEINRIWQKEFRIERLELVRDVFIFCVYT-GLAFIDVYN 269

Query: 176 LTPQNIMDDQS----TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           L P+++++D +     ++ + K + I  +PLL S+ K ILE Y   P+ ++    LP+  
Sbjct: 270 LRPEHVLEDNNGNLWIVKPREKTNNICNIPLL-SIPKQILEKYKDNPYCMDKGTLLPV-- 326

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHF 290
                P N  +   Y++++    G+  + T HT RHSFA+ + L+N   L ++  +LGH 
Sbjct: 327 -----PCNQKM-NSYLKEIADLCGIKKNLTTHTARHSFASVIALANNVSLPNVAKMLGHS 380

Query: 291 RLSTTQIYTNV 301
               TQ Y  V
Sbjct: 381 STRMTQHYAKV 391


>gi|229020853|ref|ZP_04177558.1| Integrase/recombinase [Bacillus cereus AH1273]
 gi|229022059|ref|ZP_04178613.1| Integrase/recombinase [Bacillus cereus AH1272]
 gi|228739211|gb|EEL89653.1| Integrase/recombinase [Bacillus cereus AH1272]
 gi|228740440|gb|EEL90733.1| Integrase/recombinase [Bacillus cereus AH1273]
          Length = 315

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/265 (21%), Positives = 118/265 (44%), Gaps = 13/265 (4%)

Query: 40  ECDTRQFLIFLAFYTEEKI--TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97
           +C  R    +   Y  E +   I+ +  ++  +I+  I + + + +   ++   L   KS
Sbjct: 42  DCQLRNLRPYTIKYYRESLQTKIKPLVLMTEDDIKNMIMEMQRRGLKVTTINTKLRAFKS 101

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
           F  +L K K   ++ I +++ LK+   +   L++ Q       +LL       ++  R+ 
Sbjct: 102 FYNFLHKHKHIKKNPIADIKLLKQRKEVVPTLSKDQI-----KLLLSLCDRKTFVGVRDY 156

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            I+ L+    +R++E  ++   ++  ++  +R + K    RIVP+   +++ +  Y  + 
Sbjct: 157 TIMMLMLDTAIRVNELANIEVADVKHNEIVIR-ETKTFFERIVPMSKKLKEQMEIYIKIR 215

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSN 276
            +  +      LF    G  L     Q  I    +  G+  +  +AHT RH+ A   + N
Sbjct: 216 GYAESD----KLFLNQDGNELKKRSIQTRIEYYGKLSGIKDVRVSAHTFRHTSAKLFIQN 271

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNV 301
           GG+   +Q +LGH  L  T+ Y N+
Sbjct: 272 GGNAFHLQQLLGHTSLEITKKYVNL 296


>gi|120403139|ref|YP_952968.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119955957|gb|ABM12962.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 367

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 139/333 (41%), Gaps = 66/333 (19%)

Query: 12  FELLKERQNWLQNL-EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR------ 64
           F +++    +L +L  IER  S  T+++Y  D R +  FLA +    I  + +R      
Sbjct: 23  FAVVEPADVFLAHLTAIER--SPGTVRAYAFDLRDYFEFLAAH---GIDWRAVRLEHLGR 77

Query: 65  -----QLSYTEIRAFISKRRT--QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
                +L  T+  A ++   T   +    ++ R L+ + SF K+  +  +     +  M+
Sbjct: 78  FVGWLRLPPTQRTASVTSLSTMEAQCSASTINRKLAAVGSFYKFYHRHGVGCGELLSTMK 137

Query: 118 --------------------------NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
                                      LK    LPR L E+    +V+            
Sbjct: 138 AGGARGSWRPFLAHLGSAGDQHRRTIKLKTRRRLPRTLPEESVQLIVNAC---------- 187

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----GDKI----RIVPLL 203
              R+  ++ LL G G+RI EAL L  ++I    + +RI+ +    G ++    R +P+ 
Sbjct: 188 DRLRDRFLIELLAGTGMRIGEALGLRHEDIDAAGTLIRIRARRNSNGARVKGGQREIPVA 247

Query: 204 PSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            S+ +   +Y      +L+ + + + L+ G  G PL        + +LR   G+    T 
Sbjct: 248 ASLIRLYTDYLVDEYGELDCDYVFVNLWGGSVGTPLRYWNVTDLVSRLRARSGVEF--TV 305

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           H LRH++AT LL  G     +Q +LGH  ++TT
Sbjct: 306 HMLRHTYATDLLRRGVPAEVVQKLLGHASVTTT 338


>gi|83815097|ref|YP_445629.1| tyrosine recombinase xerC [Salinibacter ruber DSM 13855]
 gi|83756491|gb|ABC44604.1| tyrosine recombinase xerC [Salinibacter ruber DSM 13855]
          Length = 311

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 94/244 (38%), Gaps = 41/244 (16%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S KR LS +KS   +  K +           N+  + S P   N++    L +  L    
Sbjct: 56  SQKRKLSAVKSLFTFGTKLRYFAH-------NVGAALSTPSVRNDRAERILSEADLWALL 108

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----------DQSTLRIQGKGDK 196
            + +  D RN  +L L Y  G RIS+   L  +++ D              +   GKG K
Sbjct: 109 RDER--DLRNHVLLRLFYASGGRISDVEDLRWRDLKDRPDLNGPDGRPGGQVTFFGKGGK 166

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL------ 250
            R V L   V   I+   +    + +     P+FR  +G  L+     R +++       
Sbjct: 167 TRAVTLYSKVWSLIIRLRENEESEGHGAADDPVFRSQKGGCLSRSQIWRVVKKAAVRAGV 226

Query: 251 -------------RRYLGLPLSTT---AHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
                        R   G P+ T+    H  RH+ A+H L  G DL  ++  LGH  + T
Sbjct: 227 KLTEKTGSEGAVKRDEEGEPIMTSEVSPHWFRHAHASHALQKGADLELVRETLGHESIET 286

Query: 295 TQIY 298
           T+ Y
Sbjct: 287 TKTY 290


>gi|229176443|ref|ZP_04303878.1| Tn554-related, transposase A [Bacillus cereus MM3]
 gi|228607025|gb|EEK64412.1| Tn554-related, transposase A [Bacillus cereus MM3]
          Length = 372

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 102/215 (47%), Gaps = 31/215 (14%)

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
           KSFL ++ K K +   N+L ++  +K   +      +Q  T   N+             R
Sbjct: 145 KSFLHHINKNKPSIR-NVLKVKEPRKRIQILTKEQVRQTFTATTNI-------------R 190

Query: 156 NSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQGK-------GDKIRIVPLLPSVR 207
           ++ ++ LL+  GLRI EALSL  ++ I D Q   RI+ +       G K++       V 
Sbjct: 191 DAFLIQLLFETGLRIGEALSLYLEDFIFDHQKGHRIRLRDRGELENGAKLKTGEREIFVS 250

Query: 208 KAILEYYDLCPFDL--NLNIQLP-LFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLST 260
           + +++ YD   +++   LNI+   +F  +RG+    P+N    +   ++LR+   + +  
Sbjct: 251 QHLMDLYDDYLYEIIDGLNIETNFVFIKLRGRNMGRPMNYSDVESLFKRLRKKTKIDIH- 309

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             H LRH+ AT       D++ +Q  LGH ++ TT
Sbjct: 310 -PHLLRHTHATIYYQETKDIKQVQERLGHAQIQTT 343


>gi|255505939|ref|ZP_05349026.3| integrase/recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
 gi|255264981|gb|EET58186.1| integrase/recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
          Length = 332

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 111/264 (42%), Gaps = 51/264 (19%)

Query: 61  QTIRQLSYTEIRAFISKRR----TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           Q IR++S  EIR ++   +      K+   +++R++S   SF  +L++     +S +  +
Sbjct: 91  QPIRKISTEEIRKYLVDYQKINNCSKVTVDNIRRNIS---SFFSWLEEEDYILKSPMKRI 147

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             +K    +   +++ +A+ L     L  S E     +R+ A++ LLY  G+R+ E ++L
Sbjct: 148 HKIKTKQPVKETISD-EAIEL-----LRDSCEC----SRDLAMIDLLYSTGIRVGELVNL 197

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
              ++  +     + GKGDK R V                  FD    + L  +   R  
Sbjct: 198 NISDVDFEARECIVFGKGDKERKV-----------------YFDAKAKLHLQNYLKTRAD 240

Query: 237 PLNPGVF---------------QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
             NP +F               +  IR L R L +      H  R + AT  +  G  + 
Sbjct: 241 D-NPALFVSLDEPHDRLKISGVEIRIRSLGRKLNME-KIHPHKFRRTMATRAIDKGMPIE 298

Query: 282 SIQSILGHFRLSTTQIYTNVNSKN 305
            +Q ILGH ++ TT  Y  VN  N
Sbjct: 299 QVQKILGHSQIDTTMQYAIVNQTN 322


>gi|189467606|ref|ZP_03016391.1| hypothetical protein BACINT_03996 [Bacteroides intestinalis DSM
           17393]
 gi|189435870|gb|EDV04855.1| hypothetical protein BACINT_03996 [Bacteroides intestinalis DSM
           17393]
          Length = 330

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 111/247 (44%), Gaps = 29/247 (11%)

Query: 67  SYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           S  +IRA+++    K ++ K+   +++R  S   SF  +L++     +S I  +  +K  
Sbjct: 95  STEDIRAYLAVFQRKNKSSKVTIDNIRRIFS---SFFAWLEEEDYIIKSPIRRIHKVKTG 151

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             +   L ++    L DN           I  R+ A++ LL   G+R+ E + L  ++I 
Sbjct: 152 TQVKEILTDENIEHLRDN----------CIKIRDLAMIDLLASTGMRVGELVKLDREDIN 201

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN--- 239
            ++    + GKG+K RIV    +  K  L+ Y     D N  + + L      KP N   
Sbjct: 202 FNERECIVFGKGNKERIV-YFNARAKIHLQQYLSTRKDRNKALFVSL-----AKPHNRLQ 255

Query: 240 -PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             GV  R +R++ R   + +    H  R + AT  +  G  +  +Q +LGH ++ TT  Y
Sbjct: 256 ISGVETR-LRKIGRQAKI-VRVHPHKFRRTLATMAIDKGMPVEQVQKLLGHVKIDTTMHY 313

Query: 299 TNVNSKN 305
             V+  N
Sbjct: 314 AMVSQNN 320


>gi|313680019|ref|YP_004057758.1| integrase family protein [Oceanithermus profundus DSM 14977]
 gi|313152734|gb|ADR36585.1| integrase family protein [Oceanithermus profundus DSM 14977]
          Length = 345

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 105/241 (43%), Gaps = 17/241 (7%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ-ALTLVDNVLLHT 145
           S+   L+G+++F + L+        + ++      ++  PR        L L   +L H 
Sbjct: 112 SVATYLAGVRAFYRALEWAGAAVAPDDVHA----PADPTPREERRPALPLELYRRLLEHL 167

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPL-- 202
                    R+ A++ L+   GLRISE + L   + ++ +  + ++ GKG K R VP+  
Sbjct: 168 DDPEDAGKLRDRAMVRLMAEAGLRISEVIHLDEADFLEAERLVVVRSGKGGKQRTVPVTR 227

Query: 203 -----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
                L + R+    Y +     L +N      R  RG+ L+  + ++ + +    LG P
Sbjct: 228 GLAAELAAWRRLRRAYAEPGESALFVNTG---GRKNRGRRLSASLLRKRLARYYEALGFP 284

Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                AH LRH+  T      GDL     +LGH  ++T+ IY  ++ +   D +  + D+
Sbjct: 285 PRYRGAHMLRHTAGTRFYRATGDLHVTARLLGHANVNTSAIYAKMDLEGLRDAVDRLEDE 344

Query: 317 T 317
            
Sbjct: 345 A 345


>gi|226949169|ref|YP_002804260.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
 gi|226843724|gb|ACO86390.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
          Length = 330

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 126/300 (42%), Gaps = 49/300 (16%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK----IG 84
           + LSK T+ SYE   R F  +L    EE+  I  +++++   IR +I+  + +     +G
Sbjct: 18  KNLSKKTMMSYEQTLRLFTKYL----EEEKGIGDVKKVTEKMIREYINYTKNRGKYTIVG 73

Query: 85  DR---------------------SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           D+                     ++   +  IK F  +L ++    +  + N++  K   
Sbjct: 74  DKETLKTNTPEMRKDYGKKVSITTINNYIRNIKVFFNFLLEQSYIKKDVVKNIKQFKNQR 133

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-M 182
                + + Q   L+ ++       TK+ + R+   + LL   G+RI E L +  +NI M
Sbjct: 134 KAKEFITDSQFAELLRHI-----DTTKFHERRDHLCIMLLLDTGMRIGECLEIKVENIDM 188

Query: 183 DDQSTL--RIQGKGDKIRIVPLLPSVRKAI---LEYYD-LCPFDLNLNIQLPLFRGIRGK 236
           + +S L      KG + R V     + K +   L+Y D     D        LF   +G 
Sbjct: 189 NYRSILLPAEDTKGKRDRYVYFSQVMNKELRRWLQYKDRYVESDY-------LFCTTKGT 241

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           P+    F+R ++      GL      H LR++FA   L +GG +  +  +LGH  +  T+
Sbjct: 242 PVLIRTFERKLKDYANRAGLK-DIHPHQLRNNFAKRFLMSGGSIYILSQVLGHSSVKVTE 300


>gi|223369787|gb|ACM88763.1| integrase [uncultured bacterium]
          Length = 163

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 31/42 (73%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSFATH L  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHPLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|302386391|ref|YP_003822213.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302197019|gb|ADL04590.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 351

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 105/223 (47%), Gaps = 15/223 (6%)

Query: 85  DRSLKRSLSGIKSFLKYL--KKRKITTESNILNMRNLKKSNSLPRALNEKQALTL--VDN 140
           +R + R +S +KSF  Y    +R  T  ++++ +  L + + +   ++E  AL L  V+N
Sbjct: 110 ERGIMRKISSLKSFYNYYYRNERLQTNPASLVQLPKLHEKDIIRLDIDE-VALLLDEVEN 168

Query: 141 VLLHTSHETKW---IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               T  +  +      R+ A+L L+ G G+R+SE + L   +I      +RI  KG K 
Sbjct: 169 GEALTEKQKAYHGKTKVRDLALLTLMLGTGIRVSECVGLDIDDIDLKNGGIRIHRKGGKE 228

Query: 198 RIVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
             V     V  A+L+Y +    + P D +   +  LF  ++ K +     +  +++  + 
Sbjct: 229 VTVYFGSEVENALLDYLEERSIVIPEDGH---EKALFLSLQRKRIAVRSVENLVKKYSKL 285

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           +      T H LR ++ T L    GD+  +  +LGH  ++TT+
Sbjct: 286 VTPLKQITPHKLRSTYGTSLYKETGDIYLVADVLGHSDVNTTK 328


>gi|145225223|ref|YP_001135901.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
 gi|315445672|ref|YP_004078551.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315445685|ref|YP_004078564.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315445693|ref|YP_004078572.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315446113|ref|YP_004078992.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|145217709|gb|ABP47113.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
 gi|315263975|gb|ADU00717.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315263988|gb|ADU00730.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315263996|gb|ADU00738.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315264416|gb|ADU01158.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
          Length = 360

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 2/148 (1%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A+  L+   GLR  E L+L   ++      +++ GKG K R VPL   V   I  Y 
Sbjct: 194 RDRALAGLMLLSGLRSGELLTLDVTDVDIGARWVKVMGKGAKERRVPLDVEVAGLIQTYL 253

Query: 215 DLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            +   + + N    + +G  RG+PL     +   R  R   G+ L+   H LRH+F T +
Sbjct: 254 LVERPESDSNRLFLVAKGPHRGQPLTAAGLRTIFRYHRIKSGV-LAGHPHALRHTFGTAM 312

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              G DL  +Q++LGH  + TT  Y ++
Sbjct: 313 AEAGVDLAVMQALLGHAHIDTTARYIHL 340


>gi|91215841|ref|ZP_01252810.1| integrase/recombinase-related protein [Psychroflexus torquis ATCC
           700755]
 gi|91185818|gb|EAS72192.1| integrase/recombinase-related protein [Psychroflexus torquis ATCC
           700755]
          Length = 84

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 36/56 (64%), Gaps = 1/56 (1%)

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           Y + ++   G P ST  HTLRHSFATHL+  G  LR IQ+ LGH    TT+IYT V
Sbjct: 2   YRKAVKETNGNPWST-PHTLRHSFATHLMERGTSLRHIQAALGHNSSKTTEIYTRV 56


>gi|119945594|ref|YP_943274.1| phage integrase family protein [Psychromonas ingrahamii 37]
 gi|119864198|gb|ABM03675.1| phage integrase family protein [Psychromonas ingrahamii 37]
          Length = 331

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 14/187 (7%)

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           +KK  +L  A N K  +   D  L    ++TK +  R+ AI+ +L GCGLR +E +++  
Sbjct: 135 IKKEGTLLSAENIKDLIKSCDQDL----NKTKGV--RDKAIIIILRGCGLRRTELINIRI 188

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR---- 234
             I   +  L + GK +K R +     V++AI ++  L     +L I    F  +R    
Sbjct: 189 NRINFTEKKLTVVGKSNKEREIWFSDRVKEAISDWLGLIN-KASLQISDDNFLFLRAHKS 247

Query: 235 GKPLNPGVFQRY---IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           GK +N  +  +    I Q ++ L +      H  R ++ T L+++G  +  IQ ++GH  
Sbjct: 248 GKIINQRICSQTIFDIFQAKQKLMMVKKFGPHDFRRTYITELINDGNAIEDIQGLVGHSS 307

Query: 292 LSTTQIY 298
             TT++Y
Sbjct: 308 PETTRVY 314


>gi|89147438|gb|ABD62579.1| integrase [uncultured bacterium]
          Length = 163

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 32/42 (76%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            + H LRHSFATHLL  G D+R++Q ++GH  ++TT IYT+V
Sbjct: 121 VSCHMLRHSFATHLLEQGCDIRTVQQLMGHKNVATTMIYTHV 162


>gi|327460988|gb|EGF07321.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK1057]
          Length = 328

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 112/251 (44%), Gaps = 27/251 (10%)

Query: 62  TIRQLSYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
            IR L+ +++R +++    +R++ K+   +++R  S   SF  +L+      +S +  + 
Sbjct: 88  AIRDLTTSDLRTYLAHYQQERKSSKVTIDNMRRIFS---SFFGWLEDEDYILKSPVRRIH 144

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
            +K   ++    +++    L D       HE      R+ A++ LL   G+R+ E + L 
Sbjct: 145 KIKTDKTIKETFSDEGLELLRD-----ACHEI-----RDLAMIDLLASTGMRVGELVGLN 194

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD---LNLNIQLPLFRGIR 234
            ++I   +    + GKG+  RIV      +  ++ Y D    D   L +++  P  R + 
Sbjct: 195 REDINFYERECLVFGKGNSERIVYFDARTKIHLINYLDSRQDDNPALFVSLSSPYNRLLI 254

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G     GV  R +RQ+     L      H  R + AT  +  G  +  +Q +LGH ++ T
Sbjct: 255 G-----GVETR-LRQIGEKADLN-KVHPHKFRRTLATRAIDKGMPIEQVQHLLGHVKIDT 307

Query: 295 TQIYTNVNSKN 305
           T  Y  VN  N
Sbjct: 308 TMHYAMVNQAN 318


>gi|189353108|ref|YP_001948735.1| integrase [Burkholderia multivorans ATCC 17616]
 gi|189337130|dbj|BAG46199.1| integrase [Burkholderia multivorans ATCC 17616]
          Length = 397

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 78/192 (40%), Gaps = 34/192 (17%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSVR 207
           R   +  LLY  GLRI+EA   T             D+  L + GKG + R+VP    + 
Sbjct: 208 RARWVFTLLYLGGLRITEAAETTMGRFFCRRDASGRDRWWLDVTGKGGRRRLVPATDELM 267

Query: 208 KAILEY---YDLCPF---DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL--- 258
             +  Y   + L P    D +  + LP   G   +PL      R ++Q+ R+    L   
Sbjct: 268 TELARYRRAHGLAPLPVADEDTPLVLPF--GQARRPLTRAALHRIVKQVFRHAAERLRAQ 325

Query: 259 ------------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
                         +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +    
Sbjct: 326 GDAGAEQARVLEQASAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHADD--- 382

Query: 307 GDWMMEIYDQTH 318
            DW     ++ H
Sbjct: 383 -DWRHRETEEKH 393


>gi|281425544|ref|ZP_06256457.1| integrase [Prevotella oris F0302]
 gi|281400350|gb|EFB31181.1| integrase [Prevotella oris F0302]
          Length = 406

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 142/317 (44%), Gaps = 49/317 (15%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + + I+R L    L++Y+      L  L  Y ++K  +  +  LS  + +AFI       
Sbjct: 123 ERVGIDRALKTFKLRTYQ------LSLLREYVQKKHRVSDV-PLSQLD-KAFIEGFEYYL 174

Query: 83  IGDRSLKRS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             DR LKRS     +S +++ ++   K+ +      L   + ++    PR++ +++   +
Sbjct: 175 TIDRKLKRSSISSTVSTLQTIVRMAVKKGVLDFYPFLGY-SYERPKGEPRSITQEELEHI 233

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +D        E KW + R    L++ + C  GL IS+  +L  +NI+ ++  L I+G+  
Sbjct: 234 IDL-------EIKWENYRIVRDLFV-FSCFSGLAISDVRNLREENIVLEEGELCIKGRRM 285

Query: 196 KIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL----NPGVFQRYIR 248
           K +    V +LP   + +  Y                 RGIR   +       +    + 
Sbjct: 286 KTKTPYRVQVLPPALEIMNRY-----------------RGIRAGFVFDVPTTDIILNGMH 328

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQIY  V+S+   
Sbjct: 329 HIQRNIGMKTPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAVVSSERIH 388

Query: 308 DWMMEIYDQTHPSITQK 324
             M ++  +   + T K
Sbjct: 389 RDMQKVQQRIQDTFTLK 405


>gi|161520708|ref|YP_001584135.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|160344758|gb|ABX17843.1| integrase family protein [Burkholderia multivorans ATCC 17616]
          Length = 428

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 78/192 (40%), Gaps = 34/192 (17%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSVR 207
           R   +  LLY  GLRI+EA   T             D+  L + GKG + R+VP    + 
Sbjct: 239 RARWVFTLLYLGGLRITEAAETTMGRFFCRRDASGRDRWWLDVTGKGGRRRLVPATDELM 298

Query: 208 KAILEY---YDLCPF---DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL--- 258
             +  Y   + L P    D +  + LP   G   +PL      R ++Q+ R+    L   
Sbjct: 299 TELARYRRAHGLAPLPVADEDTPLVLPF--GQARRPLTRAALHRIVKQVFRHAAERLRAQ 356

Query: 259 ------------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
                         +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +    
Sbjct: 357 GDAGAEQARVLEQASAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHADD--- 413

Query: 307 GDWMMEIYDQTH 318
            DW     ++ H
Sbjct: 414 -DWRHRETEEKH 424


>gi|323703102|ref|ZP_08114757.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
 gi|323531996|gb|EGB21880.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
          Length = 317

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 23/172 (13%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNI-------MDDQSTLRIQGKG--------DKI 197
           D   +A L LL G G+ + E L+L  Q+I         +Q+  R + +G        DK 
Sbjct: 124 DLWGAAFLTLL-GTGISLGELLALRWQDIDLKSKVLTINQALARTKSRGLIFVEPKTDKS 182

Query: 198 -RIVPLLPSVRKAILEY-YDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLR 251
            R +P+   V +A+ ++   +    L    +      +F    G P++P  F R    LR
Sbjct: 183 KRTIPMPEPVAEALQKHRVQMAQIKLAAGPKYTDQDLVFCTTYGTPIHPRNFTRKFYTLR 242

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN 302
               +P     H LRH+FAT LL  G +L+ +Q +LGH  +STT   Y++V+
Sbjct: 243 EKAKVPKDINLHALRHTFATRLLEEGENLKVVQDLLGHADISTTANTYSHVS 294


>gi|56475685|ref|YP_157274.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|58616517|ref|YP_195646.1| putative integrase [Azoarcus sp. EbN1]
 gi|58616533|ref|YP_195662.1| putative integrase [Azoarcus sp. EbN1]
 gi|56311728|emb|CAI06373.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|56315979|emb|CAI10622.1| putative integrase [Aromatoleum aromaticum EbN1]
 gi|56315995|emb|CAI10638.1| putative integrase [Aromatoleum aromaticum EbN1]
          Length = 412

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 132/289 (45%), Gaps = 18/289 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q++ Q L   RGL+  T+ +Y    R+FL     + EE  T+    +L+ +++  F+ + 
Sbjct: 121 QDYAQYLCEARGLATATIINYVPFVREFL--KQQFGEEGATLS---RLNASDVVRFV-QG 174

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITT---ESNILNMRNLKKSNSLPRALNEKQAL 135
           +  ++  +  K   + ++SFL+Y + R   T    + +  + N   + S+PRA+  ++  
Sbjct: 175 QVPRLHLKRAKLMTTALRSFLRYARYRGDVTRDLAAAVPVVANWSMT-SIPRAIAAEEVR 233

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+ ++        +    R+ AIL LL   GLR  E   L   +I  +   L ++GKG 
Sbjct: 234 QLLGSI-----DRDQPTGRRDYAILLLLARLGLRSGEVAFLELDDIDWNAGQLHVRGKGG 288

Query: 196 KIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +    PL   V +AI+ Y +   P   +  + L      RG     GV    +R      
Sbjct: 289 QRNEFPLPVEVGEAIVAYLHSGRPRSASRRVFLRTRAPNRGFQGACGVCS-LVRHAIERA 347

Query: 255 GLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           G+   T  AH  RH  AT +L  G  L  I  +LGH    TT+IYT V+
Sbjct: 348 GIHAPTRGAHQFRHGLATEMLRQGASLGEIGELLGHRHPQTTKIYTKVD 396


>gi|326335381|ref|ZP_08201569.1| mobilizable transposon [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325692446|gb|EGD34397.1| mobilizable transposon [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 410

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 10/139 (7%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           GLR+S+   L  + I++D   + +     K + V   P  ++A+    +LC    +L  +
Sbjct: 270 GLRLSDIQRLKWKEIIEDNDKIELHFTQKKTKGVEYKPISKQAL----ELCGERRDL--E 323

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
             +F  +   P +P    R +++     G+  + T H  RH+FAT  L+NG D+ ++  +
Sbjct: 324 DLVFENL---P-DPAWISRPLKKWITKAGIHKNITFHCFRHTFATLQLANGTDIYTVSKM 379

Query: 287 LGHFRLSTTQIYTNVNSKN 305
           LGH  + TTQ Y  V  KN
Sbjct: 380 LGHTNVKTTQAYAKVIDKN 398


>gi|88706575|ref|ZP_01104279.1| integrase [Congregibacter litoralis KT71]
 gi|88699287|gb|EAQ96402.1| integrase [Congregibacter litoralis KT71]
          Length = 440

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 78/169 (46%), Gaps = 17/169 (10%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG-------DKIRIVPLLPS 205
           DA  +AI  L +  G R SE        +  D  TL +  K         K +++PL PS
Sbjct: 260 DAAANAIRVLAF-TGARKSEITEARWSWVNIDAGTLTVPPKSHKSGHITGKPKVIPL-PS 317

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
             +A++E       D   +   P  RG  G  L   ++     Q+R+  GLP   T H+L
Sbjct: 318 PARAVIESLTRHGED---DFVFPATRGGGGISLPSKMWI----QIRKEAGLPDGITNHSL 370

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           RHS  T +   G +   I + LGH +LSTTQ Y ++ +++    M+E Y
Sbjct: 371 RHSLGTIMAVQGAEAAQIMAALGHSQLSTTQRYIHI-ARDARAAMVEKY 418


>gi|228912351|ref|ZP_04076045.1| Phage integrase [Bacillus thuringiensis IBL 200]
 gi|228847299|gb|EEM92259.1| Phage integrase [Bacillus thuringiensis IBL 200]
          Length = 319

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 125/290 (43%), Gaps = 47/290 (16%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T Q Y  D   FL ++      K TI TI++LS+ E+  +  +  ++K    +L++ 
Sbjct: 34  SERTKQQYLHDLSHFLRYI------KETIGTIQELSHNEMEIYFYEL-SKKYAATTLRKK 86

Query: 92  LSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
            + ++ FLKY+      ++  S+ L   ++KK   + R L  ++   ++D        E 
Sbjct: 87  KTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLYPEEVTQILD--------EL 138

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPS 205
           K  +    A  +LL   GLRI E  +    +++   S     LR+ GKG+K R V +   
Sbjct: 139 KKSNYFIYATFFLLSTTGLRIEEIATAKWADLVFHSSLNAYLLRVVGKGNKSREVRIFKD 198

Query: 206 VRKAILEYYDLCPFDLNLNIQ-----LPLFRGI--RGKPLNPGV----------FQRYIR 248
              AI     L      L+       LP   G   R   L+  V          F RY R
Sbjct: 199 TLDAICHVRSLRKQTTELDASSTSAFLPKADGTNYRADYLSSVVAKKIEEINLDFLRY-R 257

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           Q R         T HT RH  A +L+  G +L+ I+  LGH  + TT+ Y
Sbjct: 258 QDR--------ITPHTCRHFMANYLMEKGVELKKIRDYLGHESIMTTERY 299


>gi|325001049|ref|ZP_08122161.1| integrase family protein [Pseudonocardia sp. P1]
          Length = 336

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 113/273 (41%), Gaps = 18/273 (6%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  T ++Y  D R F  +      + + ++ +   +Y    A    R  +   + ++ R 
Sbjct: 47  SAHTRRAYARDIRDFYTWCHQAGLDPLRLRRVHIDAYAHELAQPQPRTGRPAAESTIARK 106

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           LS +     Y    ++   S +  ++        PR   +  +  L  + +         
Sbjct: 107 LSTLAGLYAYGVGEELLDRSPLTGVQR-------PRGGQDSVSTGLTRDEVAALLSAAAA 159

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKA 209
             AR  A++ LL   GLRI EALS   +++  ++    LR++ KG +    PL P V  A
Sbjct: 160 DGARAHALISLLVHNGLRIDEALSRDVEHLQTERGHQVLRLRRKGGRTATAPLAPPVLHA 219

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST--TAHTLRH 267
           +  Y       L      PLF    G+ ++     R IR+L R  GLP +     H+LRH
Sbjct: 220 LTVY-------LAGRTSGPLFSTRTGRRVDEPAAWRLIRRLARRAGLPQADRINPHSLRH 272

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +F T  L  G  LR +Q   GH    TT+ Y N
Sbjct: 273 TFVTAALDAGVALRDVQDGAGHSDPRTTRKYDN 305


>gi|260904385|ref|ZP_05912707.1| phage integrase family protein [Brevibacterium linens BL2]
          Length = 160

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 68/138 (49%), Gaps = 4/138 (2%)

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           CGLR  E L+L  +++      + + GKG K R VPL   V  ++++ Y L     + + 
Sbjct: 4   CGLRSCEVLALHVKDVDIGGRWITVTGKGAKQRRVPLDADV-ASVIDVYLLAERPASDSD 62

Query: 226 QLPLF-RGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
           QL L  +G  RG+ L     +   R  R   G+      H LRH+F T L   G DL  +
Sbjct: 63  QLFLVAKGTHRGQGLTAAGLRTIFRYHRDLTGVA-GGHPHALRHTFGTVLAEAGVDLAVM 121

Query: 284 QSILGHFRLSTTQIYTNV 301
           Q++LGH  + TT  Y ++
Sbjct: 122 QALLGHAHVDTTARYVHL 139


>gi|149908526|ref|ZP_01897188.1| DNA integration/recombination/invertion protein [Moritella sp.
           PE36]
 gi|149808360|gb|EDM68297.1| DNA integration/recombination/invertion protein [Moritella sp.
           PE36]
          Length = 236

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 102/226 (45%), Gaps = 29/226 (12%)

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN-ILNMRNLKKSNSLPRALNEKQAL 135
           K R +K+  +++    + +++    L +    T+ N I  +R LK   S    L  +Q  
Sbjct: 19  KLRLEKVSPKTVNNEQTYVRALFNELTRLGEWTKGNPIEGVRMLKHKQSEMGFLQPEQMT 78

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +L++   L  SH     DA     + L  GC  R  EA +L  ++++ +  T  +  KG+
Sbjct: 79  SLLET--LENSHNK---DALIITKICLSTGC--RWGEAANLRSEHVVKNIVTF-VSTKGN 130

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYL 254
           K R VP+ P+                 L+  +P   G +  K  N   F+  I+  +  +
Sbjct: 131 KPRSVPISPA-----------------LSNTMPKRTGKLFPKSCNDSTFRTAIKNAK--I 171

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            LP     H LRH+FA+H++ NGG    +Q ILGH  +  T  Y++
Sbjct: 172 KLPAGQMTHVLRHTFASHVMINGGIFLVLQRILGHASIVDTMKYSH 217


>gi|126664435|ref|ZP_01735419.1| probable integrase/recombinase [Marinobacter sp. ELB17]
 gi|126668632|ref|ZP_01739584.1| probable integrase/recombinase [Marinobacter sp. ELB17]
 gi|126626891|gb|EAZ97536.1| probable integrase/recombinase [Marinobacter sp. ELB17]
 gi|126630761|gb|EBA01375.1| probable integrase/recombinase [Marinobacter sp. ELB17]
          Length = 346

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 133/320 (41%), Gaps = 40/320 (12%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEI-RAFISK-----RRT 80
           R LS  T+++Y      F+ +L       I +Q I  + +S+    R FI       R T
Sbjct: 28  RALSPKTIEAYRISLECFVDYL-------IEVQHIQRKDISFDHFERKFIKGWLIWMRET 80

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           ++   R+L   L+ +K+FL Y+ +  +     ++ + +  K+   P    +K    L +N
Sbjct: 81  KRYQPRTLTLRLTAVKAFLSYVSREDL----RLVALNDAAKTLKAPTP-PKKPIEYLPEN 135

Query: 141 ---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDK 196
               +L     +     RN  +L LLY    R+ E   LT   + +   + L + GK DK
Sbjct: 136 ETASILAAFDGSTMKSRRNRMLLILLYETAARVGEITGLTLGELKLTKPAHLTLSGKRDK 195

Query: 197 IRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYL 254
            R+VPL     + +  Y  +  P   NL    PLF     G+P+   + +  +  + +  
Sbjct: 196 SRVVPLGDKTVEHLQVYLNEFYPHWANLPAVRPLFYSRHLGEPIR--LSEDSVSAILKKA 253

Query: 255 G---------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           G         +P++   H +R + A  L   G  L  I  +LGH  +STT  +    +  
Sbjct: 254 GDLARGTCSSIPVTLHCHMMRKTKAMDLYKQGIPLPIIMQLLGHESMSTTSAFYAFATL- 312

Query: 306 GGDWMMEIYDQTHPSITQKD 325
             D M    +   P I+Q D
Sbjct: 313 --DMMRAAMNAATPGISQSD 330


>gi|329926877|ref|ZP_08281280.1| site-specific recombinase, phage integrase family [Paenibacillus
           sp. HGF5]
 gi|328938864|gb|EGG35237.1| site-specific recombinase, phage integrase family [Paenibacillus
           sp. HGF5]
          Length = 343

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 127/299 (42%), Gaps = 36/299 (12%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI-----SKRR----- 79
           GL K T++ YE   + +  F+ +        + I  +S   +R F+       RR     
Sbjct: 36  GLRKRTIRDYE---KHYGYFVKWLRVNHPEAEYIEDVSAAILRDFVLYMKHDARRYDGHK 92

Query: 80  -----TQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
                 Q+IG  D ++   L  +K+    L++ ++   +    ++ L++   L   L ++
Sbjct: 93  YINSDKQRIGLEDTTINIRLRTLKALFNQLERDELIEVNPAGPVKLLRQDVDLTNGLTDE 152

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +        +L       ++  R+   + L+   GLRISE LSL   +I  D  T  I  
Sbjct: 153 EV-----TAILAQPDRRDFVGFRDYVAICLMLDSGLRISEMLSLRAADI--DFQTRFITL 205

Query: 193 KGD-----KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
            GD     K R+VP+   V K +L+  D        +    LF    G P+    F + +
Sbjct: 206 PGDRNKNRKPRLVPISAQVTKLLLQLIDENRAHFTTD---RLFLSCYGDPVTANHFNKRL 262

Query: 248 RQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +      G+     TAH  RH++A  ++ NG DL ++Q + G   + T + Y  +++++
Sbjct: 263 KYYGEKAGIEGKKMTAHVYRHTWARSMVLNGADLFTLQKMGGWQDVRTMRRYVQMDTRD 321


>gi|326790575|ref|YP_004308396.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326541339|gb|ADZ83198.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 373

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 86/188 (45%), Gaps = 29/188 (15%)

Query: 135 LTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----------- 181
           L  +DN+  L+      KW   R  A  +L  GCGLR SE  +LT ++I           
Sbjct: 171 LMSLDNIQTLIKLYENDKWPLHR--AAFFLAVGCGLRNSEIRALTLKDIDFNLNTITVDK 228

Query: 182 ----MDDQSTLRIQGK--GDKIRIVPLLPS-VRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
                DD+  L    K  G K +I    P  V KAI E+ D  P    + I   +F   +
Sbjct: 229 QIGLYDDEKDLFTSTKTSGSKRKIYA--PEFVMKAIKEHIDSMP---AIPINALIFTISK 283

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            KP+N      ++R++     LPL    H LRH  AT +++N  D+ ++   LGH  ++T
Sbjct: 284 NKPINSHTLSNHLREVLIANDLPL-IRFHDLRHIHATLMINNNMDIATVSKRLGHKSIAT 342

Query: 295 T-QIYTNV 301
           T + YT+ 
Sbjct: 343 TLKFYTHT 350


>gi|265763640|ref|ZP_06092208.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
 gi|263256248|gb|EEZ27594.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
          Length = 165

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 18/155 (11%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSVRKAILEY 213
           SA L+  + CGLRIS+ + L  +++  D    R+     K +    +PL     K + E 
Sbjct: 16  SAYLFSCF-CGLRISDIIGLQWKDVFIDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPER 74

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            D    D   ++              P    + I+   +  G+    T HT RH+FAT +
Sbjct: 75  GDKTADDHVFDL--------------PSGINQLIKPWAKAAGISKRFTFHTARHTFATMM 120

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           L+ G DL ++  +LGH  +  TQ+Y  + +K   D
Sbjct: 121 LTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKKDD 155


>gi|298208931|ref|YP_003717110.1| putative transposase [Croceibacter atlanticus HTCC2559]
 gi|83848858|gb|EAP86727.1| putative transposase [Croceibacter atlanticus HTCC2559]
          Length = 416

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 88/200 (44%), Gaps = 28/200 (14%)

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----- 192
           V  ++  TSH T     R+      ++ C   +S    +  +N+  D     I G     
Sbjct: 232 VQELIKFTSHRTALTQTRD----VFIFACYTGLS---WIDVKNLSQDHIVRGIDGSNWIY 284

Query: 193 ----KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
               K D    +PLLP   K +  Y +     ++  + LP++   +          +Y++
Sbjct: 285 TAREKTDTPVKIPLLPIPEKLLSRYAEKM---MDSELLLPVYSNQKT--------NKYLK 333

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++   LG+    T H  RH+FAT + LSNG  + ++  +LGH +LSTTQIY  V      
Sbjct: 334 EIAIELGIRKKLTFHVARHTFATTVTLSNGVPIETVSKLLGHTKLSTTQIYARVIESKVS 393

Query: 308 DWMMEIYDQTHPSITQKDKK 327
           + M ++ D+    I   +KK
Sbjct: 394 NDMNKLRDELRDKIDINNKK 413


>gi|218690783|ref|YP_002398995.1| Integrase [Escherichia coli ED1a]
 gi|218428347|emb|CAR09275.2| Integrase [Escherichia coli ED1a]
          Length = 338

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 24/151 (15%)

Query: 153 DARNSAILYLLYGC---GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           D+++S++L +   C   G R SEA +L    +   + T   + KG K R VP+       
Sbjct: 190 DSQSSSLLLIAKICLATGARWSEAENLQSHQVSKYRITY-TKTKGKKNRTVPI------- 241

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
                       +L  +LP  RG    P     F+R ++  R  + LP     H LRH+F
Sbjct: 242 ----------SKDLYEELPKNRGKLFTPCR-KAFERAVK--RAGIDLPEGQCTHVLRHTF 288

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           A+H + NGG++  ++ ILGH  +  T +Y +
Sbjct: 289 ASHFMMNGGNILVLRDILGHSDIKMTMVYAH 319


>gi|302668703|ref|YP_003832528.1| tyrosine recombinase XerC2 [Butyrivibrio proteoclasticus B316]
 gi|302397043|gb|ADL35946.1| tyrosine recombinase XerC2 [Butyrivibrio proteoclasticus B316]
          Length = 352

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 111/251 (44%), Gaps = 21/251 (8%)

Query: 86  RSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           R++ R LS + S F  Y+K+RK+         R   K   + R L E +    +  V+  
Sbjct: 106 RTINRFLSTLSSLFTFYVKRRKLADNPVSAVRRPAVKRKEVNR-LYEGEKSQFLSAVMNG 164

Query: 145 TS--------HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           T         HE +W+  R+  I  +    G+R+SE + L   ++   + +LR+  KG  
Sbjct: 165 TGLTKRQLPYHERQWL--RDYTIARVFLFTGIRVSELVGLDISDVNLREHSLRVVRKGGN 222

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           I  V  L      IL  Y     ++ L + +  LF   + + +     ++ I++ ++  G
Sbjct: 223 IERV-YLDDETDLILREYLAEREEMELTDDETALFISRKKQRIGVRAVEKLIKKYQQ-AG 280

Query: 256 LPL---STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS---KNGGDW 309
           LP      T H LR +FAT L S  GD+      +GH  ++TT IY  V+    K G + 
Sbjct: 281 LPSHPNGLTPHRLRATFATDLYSATGDIYRTSKAMGHKSIATTTIYAEVSDKQKKEGRNI 340

Query: 310 MMEIYDQTHPS 320
           ++  Y  T  S
Sbjct: 341 LLSSYRDTEES 351


>gi|224538864|ref|ZP_03679403.1| hypothetical protein BACCELL_03760 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519518|gb|EEF88623.1| hypothetical protein BACCELL_03760 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 330

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 111/247 (44%), Gaps = 29/247 (11%)

Query: 67  SYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           S  +IRA+++    K ++ K+   +++R  S   SF  +L++     +S I  +  +K  
Sbjct: 95  STEDIRAYLAVFQRKNKSSKVTIDNIRRIFS---SFFAWLEEEDYIIKSPIRRIHKVKTG 151

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             +   L ++    L DN           I  R+ A++ LL   G+R+ E + L  ++I 
Sbjct: 152 TQVKEILTDENIEHLRDN----------CIKIRDLAMIDLLASTGMRVGELVKLDREDIN 201

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN--- 239
            ++    + GKG+K RIV    +  K  L+ Y     D N  + + L      KP N   
Sbjct: 202 FNERECIVFGKGNKERIV-YFNARAKIHLQQYLSTRKDRNKALFVSL-----AKPHNRLQ 255

Query: 240 -PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             GV  R +R++ R   + +    H  R + AT  +  G  +  +Q +LGH ++ TT  Y
Sbjct: 256 ISGVETR-LRKIGRQAKI-VRVHPHKFRRTLATMAIDKGMPVEQVQKLLGHVKIDTTMHY 313

Query: 299 TNVNSKN 305
             V+  N
Sbjct: 314 AMVSQNN 320


>gi|126667017|ref|ZP_01737992.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126628423|gb|EAZ99045.1| phage-related integrase [Marinobacter sp. ELB17]
          Length = 181

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 71/159 (44%), Gaps = 27/159 (16%)

Query: 159 ILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           +L +LY  G R+SE + +   +I +   +++R+ GKG K R VPL     K I ++    
Sbjct: 1   MLTVLYNTGARVSELIGIRVADITLAATASVRLHGKGRKQRTVPLWKETAKEIRQWLKYA 60

Query: 218 PFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYLGLPLST-------------TAH 263
               +L+++ PL     G P+    V +R        L L +ST             + H
Sbjct: 61  ----DLHVEQPLIPNRSGLPMTRTNVAER--------LNLAVSTATKMCPQLAGRRISPH 108

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           T RH+ A HLL  G DL  I   LGH    TT  Y   +
Sbjct: 109 TWRHTTAMHLLQAGVDLTVIALWLGHESPVTTHGYVEAD 147


>gi|260889470|ref|ZP_05900733.1| tyrosine recombinase XerD [Leptotrichia hofstadii F0254]
 gi|260860881|gb|EEX75381.1| tyrosine recombinase XerD [Leptotrichia hofstadii F0254]
          Length = 134

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 9/134 (6%)

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALNEKQ 133
           +K   + +  R++ R +S +++F KYL++ K+  T ++  +N+   +K   LP  LN   
Sbjct: 6   TKMSVKPVSKRTINRKISALRTFFKYLQEIKVIETNKAAYINVPKFEKE--LPNVLNRDD 63

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                 N L H     K    R+  I+ LLY  GLR  E ++L+   I  ++  +R+ GK
Sbjct: 64  L-----NSLRHVISTEKITGIRDRLIIELLYSSGLRSMELINLSEFMIDIEEREIRVIGK 118

Query: 194 GDKIRIVPLLPSVR 207
           GDK RI  L+  +R
Sbjct: 119 GDKERITFLVKMLR 132


>gi|331663926|ref|ZP_08364836.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA143]
 gi|331059725|gb|EGI31702.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA143]
          Length = 209

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 74/174 (42%), Gaps = 21/174 (12%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT------------PQNIMDDQSTLR 189
           LL  S + K   +R+  ++ L Y  GLR+SE LSL              Q I +  ST+ 
Sbjct: 14  LLLQSVKQKSCSSRDVCMILLAYFHGLRVSELLSLQLSDLELTTEKIYIQRIKNGFSTVH 73

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
              K + I I   L       +++++  P+         LF    GKPL+   F   +  
Sbjct: 74  PLQKEEVIAITNWLNERNSINVKHFNDNPW---------LFVSRTGKPLSRQRFYNIVSA 124

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             +  GL +    H LRH+    L  NG D R IQ  LGH  +  T IYT  NS
Sbjct: 125 AGKNAGLNIKVHPHMLRHACGYSLADNGVDTRLIQDYLGHRNIRHTVIYTASNS 178


>gi|315505957|ref|YP_004084844.1| integrase family protein [Micromonospora sp. L5]
 gi|315412576|gb|ADU10693.1| integrase family protein [Micromonospora sp. L5]
          Length = 329

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 121/281 (43%), Gaps = 18/281 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT-EIRAFISK 77
           + WL+N    R LS+ T  +Y  D   +L + A    + +    +   +Y  E+ +    
Sbjct: 24  EAWLRN----RRLSEHTRDAYRRDVTGWLTWCAEQAVDPLRATFLDVNAYGRELESTPRG 79

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSLPRALNEKQAL 135
           R  + +   ++ R LS + S+  +L K      + +   +   + + +S    L   +  
Sbjct: 80  RAGRPLTPATVARRLSALSSWYDFLVKLGAVPANPVSAADRPRVDRDHSATVGLTPDE-- 137

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGK 193
             VD ++     +T    ARN A + LL   GLR+ E ++L   ++  ++   ++R  GK
Sbjct: 138 --VDALIAAAEADTGPAAARNRAAVALLADLGLRVGELVALDVSDLGTERGHRSIRFVGK 195

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQL 250
           G K+R   L P    A+  Y  +      + +     PL     G  L+     R +R+L
Sbjct: 196 GGKVRRRALTPGTAYAVDAYLAVRAAAQGVTVPELTGPLLVTATGGRLDRHAVFRLVRRL 255

Query: 251 RRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGH 289
            +  G+      + H+LRH+FAT   S G  L  +Q  +GH
Sbjct: 256 AQRAGIAAWAKLSPHSLRHAFATTARSEGVPLEDVQDAMGH 296


>gi|238023317|ref|YP_002907550.1| Phage integrase family protein [Burkholderia glumae BGR1]
 gi|237880370|gb|ACR32700.1| Phage integrase family protein [Burkholderia glumae BGR1]
          Length = 564

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 82/203 (40%), Gaps = 56/203 (27%)

Query: 153 DARNSAILYLLYG-CGLRISEALSL-------------TPQNIMDDQSTLRIQGKGDKIR 198
           D R +  L LL G  GLRI EA+++             TP + M     LR+ GKG K R
Sbjct: 348 DWRVARALVLLMGDAGLRIEEAVTVERGGLQWWPAEDETPASWM-----LRLIGKGSKER 402

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFR--------------GI------- 233
           IVPL      A+ E++     DL+        +PL                G+       
Sbjct: 403 IVPLTEDTVAALREHWQDRGLDLDAPGAAADSVPLVAPTVVPPTPASREKFGVTDAGEVT 462

Query: 234 RGKPLNPGVFQRYI-RQLRRYLG-LP----------LSTTAHTLRHSFATHLLSNGGDLR 281
           R     P   +R + R LRR L  LP           +T+ H  RH+F T   + G  + 
Sbjct: 463 RAAGYTPRAARRVVTRALRRLLEQLPDWEESARRQLAATSPHAFRHTFGTQSAAAGMAIE 522

Query: 282 SIQSILGHFRLSTTQIYTNVNSK 304
            +Q +LGH  L TT IY N   +
Sbjct: 523 VLQQVLGHGSLQTTTIYVNAEQQ 545


>gi|167767086|ref|ZP_02439139.1| hypothetical protein CLOSS21_01604 [Clostridium sp. SS2/1]
 gi|167711061|gb|EDS21640.1| hypothetical protein CLOSS21_01604 [Clostridium sp. SS2/1]
 gi|291559577|emb|CBL38377.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2]
          Length = 328

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 106/234 (45%), Gaps = 25/234 (10%)

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +++++ KI   +++R  S   SF  +L+      +S +  +  +K  +++     ++Q  
Sbjct: 106 AEKKSSKITIDNIRRIFS---SFFAWLEDEDYIIKSPVRRIHRIKSGSTIKETYTDEQLE 162

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           T+ DN            + R+ A++ +L   G+R+ E + L  ++I  D+    + GKGD
Sbjct: 163 TMRDNCG----------NLRDLALIDILASTGMRVGELVLLNKEDISFDERECIVFGKGD 212

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLN----LNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           K R+V    +  K  L+ Y     D N    ++++ P  R      +  G  +  +R+L 
Sbjct: 213 KERMV-YFDARTKIHLQNYLNSRVDTNNALFVSLKAPYDR------MKIGGIEVRLRELG 265

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           + L +      H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V   N
Sbjct: 266 KRLNID-KVHPHKFRRTLATVAIDKGMPIEQLQKLLGHQRIDTTLQYAMVKQSN 318


>gi|302867639|ref|YP_003836276.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
 gi|302570498|gb|ADL46700.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
          Length = 329

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 121/281 (43%), Gaps = 18/281 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT-EIRAFISK 77
           + WL+N    R LS+ T  +Y  D   +L + A    + +    +   +Y  E+ +    
Sbjct: 24  EAWLRN----RRLSEHTRDAYRRDVTGWLTWCAEQAVDPLRATFLDVNTYGRELESTPRG 79

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSLPRALNEKQAL 135
           R  + +   ++ R LS + S+  +L K      + +   +   + + +S    L   +  
Sbjct: 80  RAGRPLTPATVARRLSALSSWYDFLVKLGAVPANPVSAADRPRVDRDHSATVGLTPDE-- 137

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGK 193
             VD ++     +T    ARN A + LL   GLR+ E ++L   ++  ++   ++R  GK
Sbjct: 138 --VDALIAAAEADTGPAAARNRAAVALLADLGLRVGELVALDVSDLGTERGHRSIRFVGK 195

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQL 250
           G K+R   L P    A+  Y  +      + +     PL     G  L+     R +R+L
Sbjct: 196 GGKVRRRALTPGTAYAVDAYLAVRAAAQGVTVPELTGPLLVTATGGRLDRHAVFRLVRRL 255

Query: 251 RRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGH 289
            +  G+      + H+LRH+FAT   S G  L  +Q  +GH
Sbjct: 256 AQRAGIAAWAKLSPHSLRHAFATTARSEGVPLEDVQDAMGH 296


>gi|38637709|ref|NP_942683.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527047|gb|AAP85797.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 284

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 116/270 (42%), Gaps = 23/270 (8%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ-TIRQLSY 68
           V F  L +R  + + L  +R  S  T+ SY  DT + L+  A+    K         ++ 
Sbjct: 5   VGFPSLVQR-FFTERLMQQRQASPHTISSYR-DTFRLLLRFAYKRLHKPPDHLAFEDINA 62

Query: 69  TEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI---LNMRNLKKSNS 124
             + AF++   +T+ I  R+    L+ I+SF +Y         + I   L+M N +    
Sbjct: 63  PLVTAFLNDLEKTRAISVRTRNLRLTAIRSFFRYAAFETPAYSAQIQRVLSMPNKRYDRR 122

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MD 183
           L   L   +        LL    +  W   R+ A+L L    GLR+SE   LT +++ + 
Sbjct: 123 LIHFLTRPEV-----KALLAAPDKRTWCGRRDHALLRLGVETGLRVSEMTGLTREDVTLG 177

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
             + + + GKG K R+ P       AIL+ +   P   N +    LF  +RG  L+P   
Sbjct: 178 AGAHIDVMGKGRKQRVTPFSKET-AAILKAWMKEPRTPNSDA---LFPSVRGGHLSPDAV 233

Query: 244 QRYIRQL--RRYLGLPL----STTAHTLRH 267
           QR +++   +  +G P       T H LRH
Sbjct: 234 QRLLKKYATQAAMGCPSLRKKRVTPHVLRH 263


>gi|42782202|ref|NP_979449.1| Tn554-related, transposase A [Bacillus cereus ATCC 10987]
 gi|229021361|ref|ZP_04177991.1| Tn554-related, transposase A [Bacillus cereus AH1273]
 gi|229024663|ref|ZP_04181108.1| Tn554-related, transposase A [Bacillus cereus AH1272]
 gi|229112909|ref|ZP_04242439.1| Tn554-related, transposase A [Bacillus cereus Rock1-15]
 gi|42738127|gb|AAS42057.1| Tn554-related, transposase A [Bacillus cereus ATCC 10987]
 gi|228670540|gb|EEL25854.1| Tn554-related, transposase A [Bacillus cereus Rock1-15]
 gi|228736728|gb|EEL87278.1| Tn554-related, transposase A [Bacillus cereus AH1272]
 gi|228739926|gb|EEL90293.1| Tn554-related, transposase A [Bacillus cereus AH1273]
          Length = 372

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 105/236 (44%), Gaps = 31/236 (13%)

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ISK   +K+  +      +  KSFL ++ K K +   N+L ++  +K   +      +Q 
Sbjct: 124 ISKDMNEKLMRQIYAGGRTRYKSFLHHINKNKPSI-RNVLKVKEPRKRIQILTKEQVRQT 182

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-----LR 189
            T   N+             R++ ++ LL+  GLRI EALSL  ++ + D        LR
Sbjct: 183 FTATTNI-------------RDAFLIQLLFETGLRIGEALSLYLEDFIFDYKKGHRIRLR 229

Query: 190 IQGK---GDKIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIR-GKPLN 239
            +G+   G K++       V + +++ YD      +   D+  N      RG   G+P+N
Sbjct: 230 DRGELENGAKLKTGEREIFVSQHLMDLYDDYLYEIIDELDIETNFVFIKLRGRNMGRPMN 289

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
               +   ++LR+   + +    H LRH+ AT       D++ +Q  LGH ++ TT
Sbjct: 290 YSDVESLFKRLRKKTKIDIH--PHLLRHTHATIYYQETKDIKQVQERLGHAQIQTT 343


>gi|299783186|gb|ADJ41184.1| Integrase XerD [Lactobacillus fermentum CECT 5716]
          Length = 292

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 121/281 (43%), Gaps = 19/281 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q WL     ++G +KLT+ SY  D R    +L   T   +T    +Q+    +  ++   
Sbjct: 16  QEWL----TKKGGAKLTIASYLTDLRDTAAYL---TSRGVT--NWQQVDRATLTXYLQSL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     +++R +S ++ F  YL+         +  ++  +     P  L  ++A  L 
Sbjct: 67  NDKGRRTTTIQRRISSLRRFYXYLQVTGQVNHDPVALLKAKQTPRLAPVGLTPQEADLLP 126

Query: 139 DNVLLHTSHETKWID-ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           D+V        K +   RN A++ LL   G R +E   L   + +D +  +   G+  + 
Sbjct: 127 DHV------PGKGVARERNRALVALLVATGARANELRDLQTGD-LDLELGVVYLGQSSR- 178

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VPL     +  L  Y     D +   +  +F   RG+PL+       +    +   + 
Sbjct: 179 RLVPLNEQA-QTYLTTYLTARADQSATDEGYVFLNNRGQPLSRQSIWEIVNATGQRANIE 237

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            + T   +R  FA  LL++G DL  +Q ++GH  + TTQ+Y
Sbjct: 238 GAVTPQRVRDGFAYRLLAHGADLSLVQQLMGHQSILTTQVY 278


>gi|228962663|ref|ZP_04123966.1| Integrase-recombinase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228797022|gb|EEM44329.1| Integrase-recombinase [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 391

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 10/153 (6%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           N  IL  L   G RI E  +   +++  D +  L+++GKGDK+R + +   + + I E  
Sbjct: 218 NYTILLALASTGARIQELCTTRVKDLHYDGKYWLKVKGKGDKVRELFISEHLYQCICEMR 277

Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266
               F   L+     PL    RG   N       +  + +   L        S TAHT R
Sbjct: 278 RKRGFQTVLDRGDASPLLVNQRGNFYNSKTLSNQVTDMIKKTNLEFLQYRENSVTAHTFR 337

Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
           H+FA   +  G  DL  +   LGH  + TT+IY
Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370


>gi|298244848|ref|ZP_06968654.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297552329|gb|EFH86194.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 970

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 7/142 (4%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
           ARN A+L++L   G+R +E   +   ++  +Q  LR+QGKG   R VPL       +  Y
Sbjct: 769 ARNQAVLWILAETGMRTAEVCGMRLSDVDREQGRLRVQGKGSTQRWVPLGYEGFHYLCLY 828

Query: 214 YDLCPFDLNLNI------QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT-LR 266
            D        ++      + PLF    G PL          +LR+  G+         LR
Sbjct: 829 LDHHRLKAGQDVKRRRVGEEPLFLSKTGHPLTSNGIALLFGRLRKQAGITRKEVGPVLLR 888

Query: 267 HSFATHLLSNGGDLRSIQSILG 288
            +FA   L  GGDL +++  LG
Sbjct: 889 DTFAVRYLQEGGDLLTLRQQLG 910


>gi|291286626|ref|YP_003503442.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290883786|gb|ADD67486.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 342

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 111/246 (45%), Gaps = 42/246 (17%)

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILN-MRNLKKSNSLPR 127
           ++  F + R        S+   +  IK+ F K ++  K+    N LN  + LK   +LP+
Sbjct: 102 DLSDFTTHRLKAGYAKTSINIDIRNIKAAFSKAVEWEKLA--QNPLNGFKQLKIDKNLPK 159

Query: 128 ALN----EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            L     +K A  L DN L            R++   Y+L GC  R SEAL LT  +I  
Sbjct: 160 FLTFDDLDKFANILGDNPL------------RHAFFFYVLTGC--RRSEALVLTWDDIDF 205

Query: 184 DQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRG-IRGKP 237
            +  + I + K  + R +P+  S+       Y+L      LN   P    LF G I+G  
Sbjct: 206 TRMVVHIRKTKNHEARDIPICDSL-------YEL------LNGITPKQGYLFPGKIKGTH 252

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+       I+      G P     H LRH+FA+ L  +G  L++I+ +LGH  + TT+I
Sbjct: 253 LDKDTMTHNIKDCLTEAGFP-DMRLHDLRHTFASLLALSGETLQTIRDLLGHSDIRTTEI 311

Query: 298 YTNVNS 303
           Y ++ +
Sbjct: 312 YAHLTA 317


>gi|328950733|ref|YP_004368068.1| integrase family protein [Marinithermus hydrothermalis DSM 14884]
 gi|328451057|gb|AEB11958.1| integrase family protein [Marinithermus hydrothermalis DSM 14884]
          Length = 344

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 127/293 (43%), Gaps = 34/293 (11%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ---------K 82
           S  TL++Y    R +L + A+  E +  +  + + +  ++  +++  +T           
Sbjct: 49  SPQTLRTYRVAVRDYLAW-AWPPEAEGPVVPLLKATADDLDRYVADLQTHGGHLPETSAP 107

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ------ALT 136
           +   ++   L+G+++F + L+               L +  + PR    ++       L 
Sbjct: 108 LKPSTIATYLAGVRAFYRALE---------WAGAARLPEGVAAPRDPTPREERRPALPLR 158

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGD 195
           L   +L H + E   +  R+   + LL   GLRISE + L  +++   +  L ++ GKG 
Sbjct: 159 LYRALLEHLAGEEPRV-LRDRVAVRLLGEVGLRISEVIHLKVEDVHLAEGLLVVRRGKGG 217

Query: 196 KIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           K R +PL   V++ +  +  +      P +  L + L   R  RG+ ++    ++ + + 
Sbjct: 218 KQRTLPLPRGVQRDLAAWLRVRAAHAAPGEDTLLVNLG-GRKNRGRAVSDSTLRKTLNRY 276

Query: 251 RRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            R LG P     AH LRH+  T       DL     +LGH  ++TT IY  ++
Sbjct: 277 YRALGFPARYRGAHMLRHTAGTRFYKATRDLHVTARLLGHSNINTTAIYAKMD 329


>gi|315648604|ref|ZP_07901701.1| integrase family protein [Paenibacillus vortex V453]
 gi|315275983|gb|EFU39331.1| integrase family protein [Paenibacillus vortex V453]
          Length = 305

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 126/294 (42%), Gaps = 22/294 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFL--AFYTEEKITIQTIRQLSYTEIRAFIS 76
           Q+++  L     L+  TL+ Y  D + F+ +   A++ EE+I  +     + T  R   +
Sbjct: 16  QDFIHALTTHEDLNPKTLKEYASDLKHFIGWFETAYHQEEEIIFRIEDVATPTLTRYREA 75

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            ++  ++   ++ R L  +K F ++              ++ + +    PR + +K+   
Sbjct: 76  AQKIMELKPATINRRLITLKRFFEWAVSESRIRRDPSKPVKLVPEEKVSPRQMTDKEEAA 135

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM----DDQSTLRIQG 192
           LV       S        R+  IL +++  GLR  E   L P +I       Q T+R  G
Sbjct: 136 LVAAAEHGGS-------LRDQTILIVMFHTGLRSMEVCDLAPGDIQIGKRSGQLTVR-SG 187

Query: 193 KGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           K +K R VPL  + R A+ +Y  +L P    L         +  + L   + Q+Y++  R
Sbjct: 188 KRNKQREVPLNATCRVALEKYLAELPPHSPFLFPSEKTGDRLTERALR-HLIQKYMKAAR 246

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
              GL    +AH LRH F  ++++    L  +  I+GH  L TT IY      +
Sbjct: 247 -LEGL----SAHDLRHRFG-YVMAENTPLHRLAQIMGHDSLDTTMIYVKATRAD 294


>gi|86130576|ref|ZP_01049176.1| phage integrase family protein [Dokdonia donghaensis MED134]
 gi|85819251|gb|EAQ40410.1| phage integrase family protein [Dokdonia donghaensis MED134]
          Length = 417

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 77/147 (52%), Gaps = 16/147 (10%)

Query: 162 LLYGC--GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRI-VPLLPSVRKAILEYYD 215
            ++ C  G+   + ++LT +N+   MD  + +  + +  K  + VPLL    + I+  Y+
Sbjct: 252 FVFSCYTGISYVDIMNLTEENLVLGMDGGNWIYTKRQKTKSAVKVPLLGKAEE-IISKYE 310

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
             P        LP+   I  + LN      Y++++  ++G+  + T H  RH+FAT + L
Sbjct: 311 RHPMTEITGTLLPV---ITNEKLNV-----YLKEVAHFVGIKKNLTFHMARHTFATTITL 362

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SNG  + ++  +LGH +++TTQIY  V
Sbjct: 363 SNGVPIETVSKLLGHSKIATTQIYARV 389


>gi|295133368|ref|YP_003584044.1| transposase [Zunongwangia profunda SM-A87]
 gi|294981383|gb|ADF51848.1| putative transposase [Zunongwangia profunda SM-A87]
          Length = 400

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 20/160 (12%)

Query: 162 LLYGC--GLRISEALSLTPQNIM----DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
            L+ C  GL   +A SL  ++I+     ++  ++ + K  K+  V +LP V KAIL+ Y+
Sbjct: 252 FLFSCYSGLSYGDAKSLEAKHIVTGIDGNKWIVKEREKTGKLFKVAMLPKV-KAILKKYE 310

Query: 216 LCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL- 273
               + N++ + LP++   +          +Y++ L +   +    T H  RH+FAT + 
Sbjct: 311 K---EANISGLLLPVYSNQKT--------NQYLKDLAKLAKISKKLTFHVARHTFATTVT 359

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           LS G  + ++  +LGH +LSTTQIY+ V  +   D M +I
Sbjct: 360 LSKGIPIETVSKLLGHTKLSTTQIYSRVLDQKLSDDMRKI 399


>gi|288561514|ref|YP_003428920.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4]
 gi|288548146|gb|ADC52028.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4]
          Length = 362

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 133/326 (40%), Gaps = 48/326 (14%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG---- 84
           R LS  +L +Y  D   F IF  +   E I    I+++    +     ++    +G    
Sbjct: 34  RKLSSSSLMNYCHD---FKIFFNWIISESIYQGNIKEVPLEIMEKLTVQQMESFLGFLEY 90

Query: 85  -----DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK-------SNSLPRALNEK 132
                + ++ R LS +KS   YL+    T + N    RN+          +S+    N+ 
Sbjct: 91  VLENKEITVNRKLSALKSLFNYLQNIAETPDLNPYISRNVMTKIDFNVMKDSIETTANKM 150

Query: 133 QALTLV----DNVLLHTSHETKWID--------------ARNSAILYLLYGCGLRISEAL 174
           +   L+    +      SH+   I+               R++AI+ L+ G GLR+SE +
Sbjct: 151 EGKILMGDEYEAFRQFISHDYGQINKNNKKIFNFHILNKERDTAIISLILGSGLRLSEVV 210

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY-------YDLCPFDLNLNIQL 227
           +L   +I  ++ T R   KG+K + V         + EY       Y +      L +  
Sbjct: 211 NLDLADIDFNKFTARAIRKGNKEQFVYFSKLAMDDLQEYLTVRTERYKVEKGVKALFVSA 270

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           P+      + L+    ++ + +     G P S + H LRHSFAT       D+  ++  L
Sbjct: 271 PMGPKGTSRRLSARAIEKMVEKYALAYGKP-SLSVHKLRHSFATRYHREINDVPKLRRQL 329

Query: 288 GHFRLSTTQIYTNVNS---KNGGDWM 310
           GH  + TT IYT++ +   KN  D M
Sbjct: 330 GHSSIQTTMIYTHIKNDDLKNAVDNM 355


>gi|255690107|ref|ZP_05413782.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM
           17565]
 gi|260624389|gb|EEX47260.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM
           17565]
          Length = 429

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 67/135 (49%), Gaps = 10/135 (7%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           GLR S+   L  ++I+ D+   ++     K + V  +P   +A    Y LC      +  
Sbjct: 275 GLRHSDIKQLKWRDIVKDKEHYQLHFTQQKTKGVEYMPISDQA----YSLC--GERGDAD 328

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
             +F G++    +P    R +++     G+    T H  RH++AT  L+NG D+ ++  +
Sbjct: 329 RLVFEGLQ----DPSWINRPVKRWVEASGITKHITFHCFRHTYATLQLTNGTDIYTVSKM 384

Query: 287 LGHFRLSTTQIYTNV 301
           LGH +++TTQIY  +
Sbjct: 385 LGHKKVTTTQIYAKI 399


>gi|160945578|ref|ZP_02092804.1| hypothetical protein FAEPRAM212_03107 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443309|gb|EDP20314.1| hypothetical protein FAEPRAM212_03107 [Faecalibacterium prausnitzii
           M21/2]
          Length = 327

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 111/248 (44%), Gaps = 25/248 (10%)

Query: 64  RQLSYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           +Q++  ++R +++    +RR+ K+   +++R LS   SF  +L+      +S +  +  +
Sbjct: 89  QQITTDDLRKYLTDYQTQRRSSKVTIDNIRRILS---SFFSWLEDEDFIVKSPVRRIHKV 145

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K +  +     ++    + DN              R+ AI+ LL   G+R+ E ++L  +
Sbjct: 146 KTAKIIKETYTDEALELMRDNCST----------VRDLAIIDLLASSGMRVGELVTLNRE 195

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKP 237
           +I  ++    + GKG+K R+V      +  +  Y      D   +    LF  ++   + 
Sbjct: 196 DINFNERECVVFGKGNKERLVYFDARTKIHLQNY-----LDERSDSNPALFVTLKEPHER 250

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L  G  +  +R+L R L L      H  R + AT  +  G  +  +Q +LGH ++ TT  
Sbjct: 251 LMIGGVETMLRELGRRLKLN-KVHPHKFRRTLATSAIDKGMPIEQVQQLLGHQKIDTTMR 309

Query: 298 YTNVNSKN 305
           Y  V  +N
Sbjct: 310 YAMVKQQN 317


>gi|229065157|ref|ZP_04200448.1| Transposition regulatory protein TnpA [Bacillus cereus AH603]
 gi|228716123|gb|EEL67845.1| Transposition regulatory protein TnpA [Bacillus cereus AH603]
          Length = 356

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 109/236 (46%), Gaps = 43/236 (18%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +K+  +   R  S  KSFL ++ + K     +I N+  LK+       L ++Q    V  
Sbjct: 114 EKLMKQVFTRGNSRYKSFLHHVNQDK----PSIRNILKLKEPRKRVDTLTKEQ----VQQ 165

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           VL  T+      + R++ ++ LL+  GLRI EAL+L  ++ + D +      KG +IR++
Sbjct: 166 VLQATT------NIRDTFLIQLLFETGLRIGEALALFMEDFVFDHA------KGHRIRLI 213

Query: 201 --------PLLPS------VRKAILEYYD------LCPFDLNLNIQLPLFRGIR-GKPLN 239
                    +L +      V +++++ YD      L   +L+ N      RG   GKP+ 
Sbjct: 214 DRGELENGAMLKTGEREIYVSQSLMDLYDDYLYEVLDELELDSNFVFVKLRGKDVGKPME 273

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
               +   ++L++  G+ L    H  RH+ AT       D++ +Q  LGH ++ TT
Sbjct: 274 YWNVESLFKRLKKKTGINLH--PHLFRHTHATIYYQKTKDIKQVQERLGHSQIQTT 327


>gi|298528636|ref|ZP_07016040.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298512288|gb|EFI36190.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 414

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 112/249 (44%), Gaps = 23/249 (9%)

Query: 63  IRQLSYTEIRAF----ISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           I ++ +T++ AF    I K  R   +  RS+  +LS ++    Y     I    + +++ 
Sbjct: 140 IGEVFFTKVTAFHLEKIKKEMRDASLSPRSIGYALSVVRQVFCYASDHGIFEGVDPVSLV 199

Query: 118 NLKK-SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
            +    N   R L   +A  L+D VL  +S  T         I  +   CG R  E  SL
Sbjct: 200 KMPHYDNRRIRFLTHSEAEILLD-VLCFSSQNT-------HDIALIALHCGPRAGEIFSL 251

Query: 177 TPQNIMDDQSTLRIQGKGDK-IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           T Q+I   Q  +  +   +K +R +P+   VRK +    D    D +  +  P   G R 
Sbjct: 252 TWQDIDFSQGLVTFRDTKNKYVRHIPITKRVRKMLERRSD----DRSSALVFPDRNGGRR 307

Query: 236 KPLNPGVFQRYIRQLRRYLGLP---LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           K ++   F+R I++L    G+         HTLRH+ A+ L+  G  L +++  LGH ++
Sbjct: 308 KKVSKA-FERTIKELGWNKGIDDPRQKVVFHTLRHTCASWLVMAGVPLYTVKEYLGHKQI 366

Query: 293 STTQIYTNV 301
           S T+ Y ++
Sbjct: 367 SQTERYAHL 375


>gi|196043090|ref|ZP_03110329.1| transposition regulatory protein TnpA [Bacillus cereus 03BB108]
 gi|196048087|ref|ZP_03115265.1| transposition regulatory protein TnpA [Bacillus cereus 03BB108]
 gi|228950293|ref|ZP_04112469.1| Tn554-related, transposase A [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|196021343|gb|EDX60072.1| transposition regulatory protein TnpA [Bacillus cereus 03BB108]
 gi|196026574|gb|EDX65242.1| transposition regulatory protein TnpA [Bacillus cereus 03BB108]
 gi|228809380|gb|EEM55825.1| Tn554-related, transposase A [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 372

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 105/236 (44%), Gaps = 31/236 (13%)

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ISK   +K+  +      +  KSFL ++ K K +   N+L ++  +K   +      +Q 
Sbjct: 124 ISKDMNEKLMRQIYAGGRTRYKSFLHHINKNKPSIR-NVLKVKEPRKRIQILTKEQVRQT 182

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-----LR 189
            T   N+             R++ ++ LL+  GLRI EALSL  ++ + D        LR
Sbjct: 183 FTATTNI-------------RDAFLIQLLFETGLRIGEALSLYLEDFIFDYKKGHRIRLR 229

Query: 190 IQGK---GDKIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIR-GKPLN 239
            +G+   G K++       V + +++ YD      +   D+  N      RG   G+P+N
Sbjct: 230 DRGELENGAKLKTGEREIFVSQHLMDLYDDYLYEIIDELDIETNFVFIKLRGRNMGRPMN 289

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
               +   ++LR+   + +    H LRH+ AT       D++ +Q  LGH ++ TT
Sbjct: 290 YSDVESLFKRLRKKTKIDIH--PHLLRHTHATIYYQETKDIKQVQERLGHAQIQTT 343


>gi|13488150|ref|NP_085857.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14028106|dbj|BAB54698.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 338

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 134/319 (42%), Gaps = 43/319 (13%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS---KRRTQ 81
           L  +RG S  T ++Y    +    F+A     +I    +  L+   I  F+      R+ 
Sbjct: 21  LPRQRGASPHTTRAYRDTLKLLFQFVAQRRGREIADLVLEDLNADTIAGFLDHLESERSN 80

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
               R+ +R+   ++SF K+L +      +++ N     +  +LP    +++ +T ++ V
Sbjct: 81  SAATRNCRRA--ALRSFFKHLLR------NDLDNALRYTRVLALPAKRMKQKPVTYLEAV 132

Query: 142 LLHT--------SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQG 192
            +          +H+  W   R+  +L  LY    R+SEA  L  +++ +     +R++G
Sbjct: 133 DVRAIIGNPDRRTHD-GW---RDHTLLLFLYNSAARVSEATGLLWRDLQLTPPRQVRLRG 188

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQRYIR 248
           KG K R+VP+      A+     L     + ++    F     +PL       +  ++  
Sbjct: 189 KGRKERLVPIWRETADALGRLRKLSGGADHEHV----FVNRHNQPLTRDGVAYILAKHAA 244

Query: 249 QLRRYLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            + R  G P       T H LRHS A  LL +G D+  I+  LGH  ++TT  Y + N K
Sbjct: 245 SVAR--GRPRLARDRITPHVLRHSAAVALLQSGTDVTVIRDYLGHSSIATTNRYISTNLK 302

Query: 305 NGGD-----WMMEIYDQTH 318
              D     W     + TH
Sbjct: 303 MRRDALETFWKHAGIEATH 321


>gi|298346534|ref|YP_003719221.1| site specific recombinase XerD [Mobiluncus curtisii ATCC 43063]
 gi|298236595|gb|ADI67727.1| site specific recombinase XerD [Mobiluncus curtisii ATCC 43063]
          Length = 264

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 34/217 (15%)

Query: 89  KRSLSGIK-SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           +RS  G+   F K+L +  I  +S    ++ +   + +P    E      + N    T+ 
Sbjct: 66  RRSAQGVAHQFFKFLVEDGILKDSPAEFLKPVHVPDGVPHPAPESAVRHALQNAPKRTA- 124

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
               +  R +A+      CGLR  E  +L   N  D +  LR++GKG ++R++PL  S  
Sbjct: 125 ----LMVRFAAL------CGLRACEICTLR-GNAWDGE-LLRVKGKGGRVRVIPLQDSTL 172

Query: 208 KAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              LE     L P  ++ ++       + G  L PGV                  T H+L
Sbjct: 173 IYSLESCPGWLFPGRIDGHLSAQYTAKLLGSALPPGV------------------TGHSL 214

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           RH F T       DL ++ +++GH +  TT+ Y  ++
Sbjct: 215 RHRFGTVAYRATHDLLAVGAVMGHVKTDTTKRYIKLD 251


>gi|251780370|ref|ZP_04823290.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243084685|gb|EES50575.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 398

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 79/181 (43%), Gaps = 37/181 (20%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG--------------KGDKIRIVPLLPS 205
           L L Y CGLR+ EA ++T +++  +   L I                K D  RI+ L  +
Sbjct: 203 LQLAYRCGLRLGEAFAITWEDVDFENGKLDINKQVQYKNKYWYFSPPKYDSYRIIDLDNT 262

Query: 206 V-----------RKAILEYYDL-CPFDLNLNIQLPLFRGIR---------GKPLNPGVFQ 244
           +           RK  + Y +L     +N   Q+  F G           G  + P V Q
Sbjct: 263 IIDILKKYKQQQRKDKIYYGELYTELKINDKKQINEFDGTEIHLINIRENGTYIQPRVMQ 322

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
                +   LG+      H+LRH+ AT LLS+G +++++Q  LGH +L  T  +YT+V  
Sbjct: 323 HCFHIIHHKLGIK-ELDYHSLRHTHATMLLSSGANIKAVQERLGHKKLDMTLDVYTHVTD 381

Query: 304 K 304
           K
Sbjct: 382 K 382


>gi|163814066|ref|ZP_02205458.1| hypothetical protein COPEUT_00219 [Coprococcus eutactus ATCC 27759]
 gi|158450515|gb|EDP27510.1| hypothetical protein COPEUT_00219 [Coprococcus eutactus ATCC 27759]
          Length = 391

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 127/297 (42%), Gaps = 33/297 (11%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFY-------TEEKITIQTIRQLSYTEIRAFISKRR 79
           IE   S  T   Y  D + F  FL  +       T + I    + +L   +I  F+   R
Sbjct: 46  IENTTSTRTRLGYARDIKIFYEFLCEHNPYFNGKTPKDIKTDDLSRLEAEDIEEFLDAMR 105

Query: 80  -------TQKIGDRSLKRSLSGIKSFLKYLKK--RKITTESNILNMRNLKKSNSLPRALN 130
                  T   G+++LKR LS ++ F  YL K  R  +  +  ++M  + +   +    N
Sbjct: 106 LYEKNGRTYTNGEQALKRKLSALRVFFAYLYKNNRIDSNAAEKVDMPKIHEKKIIRMEPN 165

Query: 131 EKQALTLVDNVLLH---TSHETKWID---ARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           E      +DNV      T  + K+ +    R+ A+L L+   G+R+SE + +   +I  D
Sbjct: 166 E--VADFLDNVEYGDGLTERQKKYHEKNKVRDLALLSLMLSTGMRVSECVGIDIHDIDFD 223

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLNP 240
              ++I  KG K   V       +A+++Y +    L P   + N    LF   + K ++ 
Sbjct: 224 NMRIKIIRKGGKEAFVYFSDEACEALIKYLEERKKLVPESGHEN---ALFLSSQLKRISV 280

Query: 241 GVFQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
              +  +++      +PL   T H LR +F T L     D+  +  +LGH  ++TT+
Sbjct: 281 RSVENIVKKY-SLTSVPLKHITPHKLRSTFGTELYRATDDIYLVADVLGHSDVNTTR 336


>gi|256380351|ref|YP_003104011.1| integrase family protein [Actinosynnema mirum DSM 43827]
 gi|255924654|gb|ACU40165.1| integrase family protein [Actinosynnema mirum DSM 43827]
          Length = 398

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 75/166 (45%), Gaps = 28/166 (16%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDD------QSTLRIQG--------KGDKI 197
           I+ R + +  L  GCGLR  E L+L+P ++ ++      Q  LR+ G        KG K 
Sbjct: 202 IEPRFAIVCPLGAGCGLRQGEILALSPDDVDEERMLLIVQRQLRVVGRRLVFAPPKGGKR 261

Query: 198 RIVPLLPSVRKAILEYYDLCP-FDLNLNIQLP---------LFRGIRGKPLNPGVFQRYI 247
           R VPL   V +AI E+  L P  ++ L  + P         L  G  G+     +F + +
Sbjct: 262 RTVPLASGVLRAIREHEKLFPSAEVTLPWKTPEGVPTTARLLATGPNGRVYTGDLFHKVV 321

Query: 248 R-QLRRYLGLPLSTTA---HTLRHSFATHLLSNGGDLRSIQSILGH 289
                R  GL     A   H LRH +A+ LLS G  ++ +   LGH
Sbjct: 322 WLGAFREAGLIYRNRADGMHALRHFYASTLLSRGVSVKELAEYLGH 367


>gi|294507521|ref|YP_003571579.1| Tyrosine recombinase xerD [Salinibacter ruber M8]
 gi|294343849|emb|CBH24627.1| Tyrosine recombinase xerD [Salinibacter ruber M8]
          Length = 360

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 94/244 (38%), Gaps = 41/244 (16%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S KR LS +KS   +  K +           N+  + S P   N++    L +  L    
Sbjct: 105 SQKRKLSAVKSLFTFGTKLRYFAH-------NVGAALSTPSVRNDRAERILSEADLWALL 157

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----------DQSTLRIQGKGDK 196
            + +  D RN  +L L Y  G RIS+   L  +++ D              +   GKG K
Sbjct: 158 RDER--DLRNHVLLRLFYASGGRISDVEDLRWRDLKDRPDLNGPDGRPGGQVTFFGKGGK 215

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL------ 250
            R V L   V   I+   +    + +     P+FR  +G  L+     R +++       
Sbjct: 216 TRAVTLYSKVWSLIIRLRENEESEGHGAADDPVFRSQKGGCLSRSQIWRVVKKAAVRAGV 275

Query: 251 -------------RRYLGLPLSTT---AHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
                        R   G P+ T+    H  RH+ A+H L  G DL  ++  LGH  + T
Sbjct: 276 KLTEKTGPEGAVKRDEEGEPIMTSEVSPHWFRHAHASHALQKGADLELVRETLGHESIET 335

Query: 295 TQIY 298
           T+ Y
Sbjct: 336 TKTY 339


>gi|293415643|ref|ZP_06658286.1| type 1 fimbriae regulatory protein [Escherichia coli B185]
 gi|291433291|gb|EFF06270.1| type 1 fimbriae regulatory protein [Escherichia coli B185]
          Length = 209

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 74/174 (42%), Gaps = 21/174 (12%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT------------PQNIMDDQSTLR 189
           LL  S + K   +R+  ++ L Y  GLR+SE LSL              Q I +  ST+ 
Sbjct: 14  LLLQSVKQKSCSSRDVCMILLAYFHGLRVSELLSLQLSDLELTTEKIYIQRIKNGFSTVH 73

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
              K + I I   L       +++++  P+         LF    GKPL+   F   +  
Sbjct: 74  PLQKEEVIAITNWLNERNSLNVKHFNDNPW---------LFVSRTGKPLSRQRFYNIVSA 124

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             +  GL +    H LRH+    L  NG D R IQ  LGH  +  T IYT  NS
Sbjct: 125 AGKNAGLNIKVHPHMLRHACGYSLADNGVDTRLIQDYLGHRNIRHTVIYTASNS 178


>gi|302345835|ref|YP_003814188.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302149177|gb|ADK95439.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 330

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 108/244 (44%), Gaps = 29/244 (11%)

Query: 70  EIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +IRA+++    K ++ K+   +++R  S   SF  +L+      +S +  +  +K    +
Sbjct: 98  DIRAYLAVFQRKHKSSKVTIDNIRRIFS---SFFSWLEDEDYIIKSPVRRIHKVKTGTQI 154

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
              L ++    L DN              R+ A++ LL   G+R+ E + L  ++I  ++
Sbjct: 155 KEVLTDENLEQLRDN----------CTRVRDLAMIDLLASTGMRVGELVKLNREDINFNE 204

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN----PG 241
               + GKG+K RIV    +  K  L+ Y     D N  + + L      KP N     G
Sbjct: 205 RECIVFGKGNKERIV-YFNARAKIHLQQYLAERKDRNKALFVSL-----AKPHNRLQISG 258

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           V  R +R++ R L   +    H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V
Sbjct: 259 VETR-LRKIGR-LSKIVRVHPHKFRRTLATMAIDKGMPVEQVQKLLGHVKIDTTMHYAMV 316

Query: 302 NSKN 305
           N  N
Sbjct: 317 NQTN 320


>gi|71279488|ref|YP_270656.1| phage integrase family site specific recombinase [Colwellia
           psychrerythraea 34H]
 gi|71145228|gb|AAZ25701.1| site-specific recombinase, phage integrase family, truncated
           [Colwellia psychrerythraea 34H]
          Length = 74

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 31/41 (75%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           TAHT RHSFAT LL NG D+ ++Q +LGH  L TTQIYT V
Sbjct: 19  TAHTFRHSFATQLLLNGADISTVQELLGHNDLRTTQIYTYV 59


>gi|320353544|ref|YP_004194883.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320122046|gb|ADW17592.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 311

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 11/172 (6%)

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L  KQ  TL+D   +  S +           + LL    +R SE   L    ++  Q  +
Sbjct: 133 LTPKQIDTLLDYCCVSKSEKL-------YCYVLLLLHTAMRPSEGAGLRWDQVLIGQGMI 185

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            +       R VP+  ++RK + E   +     N  + LP  +G R +P     F+R   
Sbjct: 186 DLTETKTDPRRVPMTRTIRK-MFERMRVAGEGENGFVFLPPGKGYRDQPHR--YFRRSFD 242

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              RY G+  + T + LRHS A++L+ NG D+R++  I+GH  +S T  YT+
Sbjct: 243 NACRYAGI-CNFTLYGLRHSAASYLIMNGVDIRTVAEIMGHRNISQTMKYTH 293


>gi|317481251|ref|ZP_07940322.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902584|gb|EFV24467.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 355

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 105/252 (41%), Gaps = 19/252 (7%)

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYL---KKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +  +   + +    L+ ++SF+ YL     R +  E+ I  ++ +K        + +K  
Sbjct: 80  KNVRNCSNSTCNHRLACLRSFIIYLGHSNPRFLEQENKISEVKRMKTVRKNIVEITKKAM 139

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM----DDQSTLRI 190
             L  ++      +T     R+ A+  L+Y    RI+E LSL  ++I     +  + + +
Sbjct: 140 KALFSSI-----DQTMVTGKRDLALFTLMYSTATRINEILSLRIRDIQLHEKNIHNCIYV 194

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNPGVFQRYI 247
            GKG K R +PL+      I  Y      D      L  F    G + K     + +R  
Sbjct: 195 MGKGSKRRTIPLMKDCVNIIKSYIRQFHGDKPTENDLLFFSSHNGNKVKLTQEAISKRLK 254

Query: 248 RQLRRYLG----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              R+  G    +P     H LR + ATH L  G ++  IQ +LGH  ++TT  Y  V++
Sbjct: 255 IYARKANGICAEMPPDIHCHNLRAARATHWLEEGLNIVMIQKLLGHENIATTMNYVAVSN 314

Query: 304 KNGGDWMMEIYD 315
               + +  + D
Sbjct: 315 AQKSEALASLED 326


>gi|315444130|ref|YP_004077009.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315262433|gb|ADT99174.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
          Length = 380

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 73/181 (40%), Gaps = 23/181 (12%)

Query: 144 HTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR------------- 189
           H +   +W+ A R+S    + Y  GLR  E + L   +   +    R             
Sbjct: 180 HRAGSKRWLTALRDSIAFKVGYAYGLRRRELVMLDLTDFGPNPHVPRYGDYGAMTVRWAK 239

Query: 190 -IQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGV 242
              G G + R V  +P    A+  L+Y+  C     L    +    L+   RG  L    
Sbjct: 240 GTTGSGPRRRTVLTVPEFPWAVELLQYW--CTEGRQLLRTADRSPALWPSERGSRLTINA 297

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             R    LR   GLP     H LRHS+ THLL  G D   +Q  LGH   STT +YT+V 
Sbjct: 298 LGRSFTALRARAGLPPELKLHCLRHSYTTHLLEAGYDPLFVQQQLGHSYASTTALYTSVG 357

Query: 303 S 303
           S
Sbjct: 358 S 358


>gi|229179599|ref|ZP_04306951.1| Integrase-recombinase [Bacillus cereus 172560W]
 gi|228603893|gb|EEK61362.1| Integrase-recombinase [Bacillus cereus 172560W]
          Length = 390

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 67/153 (43%), Gaps = 10/153 (6%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           N  IL  L   G RI E  +   +++  D +  L++ GKGDK+R + +   + + I E  
Sbjct: 218 NYTILLALASTGARIQELCTARVKDLHYDGKYWLKVTGKGDKVRELFISEHLYQCICEMR 277

Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266
               F   L+   + P+F   RG   N       +  + +   L          TAHT R
Sbjct: 278 LRRGFQTVLDKGDESPVFINQRGNTYNSKTLSNQVTDMIKKTNLEFLLYRENPVTAHTFR 337

Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
           H+FA   +  G  DL  +   LGH  + TT+IY
Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370


>gi|256845130|ref|ZP_05550588.1| integrase/recombinase [Fusobacterium sp. 3_1_36A2]
 gi|256718689|gb|EEU32244.1| integrase/recombinase [Fusobacterium sp. 3_1_36A2]
          Length = 328

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 132/294 (44%), Gaps = 38/294 (12%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTI----RQLSYTEIRAFISKRRTQKIGDRS 87
           S+ T++ Y    + FL F+ +  E   +I  +    + +   ++ A+I         DR 
Sbjct: 33  SEKTVKDYMFHLKDFLHFV-YDGENDFSISEVIPLMQDIEKEDVEAYI----VHLFEDRK 87

Query: 88  LKRS-----LSGIKSFLKYLKKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLV 138
           LK++     LS +KS  K L+   +      + +    RN++  N L  ++++ + +   
Sbjct: 88  LKKTSVNTILSALKSLYKELESNGLKNPVKYIKLFKVNRNIE--NVLKVSIDDIRKII-- 143

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLR-IQGKGD 195
              L     E K+   RN  ILY L+  G+R  E L+L  ++ +  +D+   + IQ K  
Sbjct: 144 --GLYKIDSEKKY---RNITILYTLFYTGMRSKELLTLKFKHYLKREDEYFFKLIQTKSG 198

Query: 196 KIRIVPLLPSVRKAILEY--YDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           K    P+  S+ K + EY  Y +  + L+L       + L   +   PL+       I+ 
Sbjct: 199 KDVYKPIHKSLVKKLEEYKKYLISMYSLDLKDLDEKYIFLTSVLDNTPLSYRSLNAIIQD 258

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           + + +G  +S   H +RH+ AT L  +G D+  I+  LGH     T++Y N  S
Sbjct: 259 MGKMIGKDIS--PHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARS 310


>gi|26248739|ref|NP_754779.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli CFT073]
 gi|26109145|gb|AAN81347.1|AE016764_29 Type 1 fimbriae Regulatory protein fimB [Escherichia coli CFT073]
 gi|307554410|gb|ADN47185.1| type 1 fimbriae regulatory protein [Escherichia coli ABU 83972]
          Length = 209

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 74/174 (42%), Gaps = 21/174 (12%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT------------PQNIMDDQSTLR 189
           LL  S + K   +R+  ++ L Y  GLR+SE LSL              Q I +  ST+ 
Sbjct: 14  LLLQSVKQKSCSSRDVCMILLAYFHGLRVSELLSLQLSDLELTTEKIYIQRIKNGFSTVH 73

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
              K + I I   L       +++++  P+         LF    GKPL+   F   +  
Sbjct: 74  PLQKEEVIAITNWLNERNSLNVKHFNDNPW---------LFVSRTGKPLSRQRFYNIVSA 124

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             +  GL +    H LRH+    L  NG D R IQ  LGH  +  T IYT  NS
Sbjct: 125 AGKNAGLNIKVHPHMLRHACGYSLADNGVDTRLIQDYLGHRNIRHTVIYTASNS 178


>gi|197285858|ref|YP_002151730.1| phage integrase [Proteus mirabilis HI4320]
 gi|194683345|emb|CAR44052.1| phage integrase [Proteus mirabilis HI4320]
          Length = 327

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 107/239 (44%), Gaps = 31/239 (12%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNILNMRNLKK 121
           + Q++   I  + ++R  + I   ++ R L  I+     L K  +   E+  +  + LK 
Sbjct: 98  VSQVTSKSISFYQNERFAKGIKPSTINRELYAIRGIFSQLIKMGLYEAENPFIEAKKLKI 157

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           + S      E   LTL +   L  + E    D  N A+  L    G R  EA+ L  ++I
Sbjct: 158 NAS------EMSYLTLDETRKLLANLEG---DYYNIAVFCL--STGARWGEAMKLKREHI 206

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
           ++++       K  K RIVP    + K + +   +C    +L     LF  +  +     
Sbjct: 207 IENKVRFTYT-KTRKARIVP----ISKELCD--QICKGKKDL-----LFSSVSYQ----- 249

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           VF++ ++ ++    LP     H LRH+FATH + NGG + ++Q ILGH  L  T  Y +
Sbjct: 250 VFRKILKSVKP--SLPDGQATHVLRHTFATHFMINGGSIITLQRILGHASLKQTMTYAH 306


>gi|296164065|ref|ZP_06846688.1| integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295900613|gb|EFG79996.1| integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 369

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 98/233 (42%), Gaps = 35/233 (15%)

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           +R  SG K FL +L   +      I     L+     P  L   Q   ++D         
Sbjct: 140 RRRRSGWKPFLYHLSSGQPERRRTI----KLRTPRQHPTILTAGQVQAILDAC------- 188

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL---------RIQGKGDKIRI 199
              I  R+  +  LL+  G+RI EAL L  +++   +  L         R + K    R 
Sbjct: 189 ---IHLRDRLLWALLWDTGIRIGEALGLRHEDVAAAEGELTVAPRSNDNRARAKSATPRT 245

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-----PGVFQRYIRQLRRYL 254
           +P+ P + +   +Y      DL+ +    +F  + G+P       P V+   +R LRR  
Sbjct: 246 IPISPQLIRLYADYLHDEYGDLDSDY---VFVNLWGEPFGHPWGYPAVYDLVLR-LRRST 301

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNG 306
           G+      H  RH++AT LL     +  + ++LGH  ++TT  IY +++ ++ 
Sbjct: 302 GIDFD--PHWYRHTYATRLLRQNTPIEVVSTLLGHSSIATTMDIYGHLSVEDA 352


>gi|171315564|ref|ZP_02904800.1| integrase family protein [Burkholderia ambifaria MEX-5]
 gi|171099401|gb|EDT44139.1| integrase family protein [Burkholderia ambifaria MEX-5]
          Length = 343

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 15/147 (10%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I  +    G R SEA +LT   + + Q     + K  + R VP+   ++  +L + D   
Sbjct: 188 IAVVCLSTGARWSEAETLTRSQVRNGQIQF-ARTKSRRNRAVPIDDRLQHRVLAHAD--- 243

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
                       RG+R        F+  +   R  L LP     H LRH+FA+H + NGG
Sbjct: 244 ---------EHGRGVRIFSTAFSAFREAVE--RAGLELPAGQLTHVLRHTFASHFMMNGG 292

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKN 305
           ++ ++Q ILGH  L+ T  Y +++ ++
Sbjct: 293 NILTLQRILGHANLTMTMRYAHLSPEH 319


>gi|254498877|ref|ZP_05111582.1| putative integrase/recombinase [Legionella drancourtii LLAP12]
 gi|254351862|gb|EET10692.1| putative integrase/recombinase [Legionella drancourtii LLAP12]
          Length = 418

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 118/273 (43%), Gaps = 32/273 (11%)

Query: 45  QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK 104
           Q  +FL F    K  I+T RQ+   +I  FI          R  K+++SGI S+L+   K
Sbjct: 145 QISLFLDFMG--KRDIKTFRQIQPKDISDFICSL------SRYSKKTISGIASYLRMYFK 196

Query: 105 RKITTESNILNMRNLKKSNSLPR-----ALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
             I       ++     S S+P      ++ +++ +T + + +  +S   K    R+ A+
Sbjct: 197 FLIYRGDLKNDLSQSVPSVSVPYQAKIPSVWDRELITKLLDTVDRSSPRGK----RDYAM 252

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           L L    GLR+ +   LT  NI  +   + I QGK      +PL   V  A+++Y     
Sbjct: 253 LLLACRLGLRLGDIRELTLDNIDWEAEMISITQGKTKAPLCLPLTNEVGNALIDYIKFAR 312

Query: 219 FDLNL-NIQLPLFRGIRGKPLNPGV----FQRYIRQLRRYLGLPLSTTAH----TLRHSF 269
            + N   + L L      +P  P      F   +R  R   G+   +  H    +LRHS 
Sbjct: 313 PETNYRQVFLKL-----TQPFTPYSKNTHFYNIVRYWRDLSGIKFRSQQHQGLHSLRHSL 367

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           AT+LL +      I  ILGH  ++TT IY   +
Sbjct: 368 ATYLLEDNIPFSLIADILGHASMNTTMIYAKAS 400


>gi|229496998|ref|ZP_04390703.1| integrase [Porphyromonas endodontalis ATCC 35406]
 gi|229316100|gb|EEN82028.1| integrase [Porphyromonas endodontalis ATCC 35406]
          Length = 384

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 125/294 (42%), Gaps = 32/294 (10%)

Query: 31  LSKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS-- 87
           +S  TLQ Y    R FL FL   Y    I +    +L+YT IR F    RT  +G  +  
Sbjct: 104 VSAATLQKYNVCRRHFLEFLQNDYRRADIKLS---ELTYTVIREFDIYLRTA-VGQNANT 159

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLVDNVLLHTS 146
             +++   K+ +   +K  +      LN R +L+  N   R         L D  ++  +
Sbjct: 160 ATKTMKTFKTIVILGQKMGVLHHDPFLNHRFHLEPVN---RGF-------LTDEEIMKIA 209

Query: 147 HETKWIDARNSAILYLLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPL 202
           ++   I          ++ C  GL   +  +LTP NI  +DD+  +  + +   +    L
Sbjct: 210 NKDFGIQRLELVRDVFIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVEANVL 269

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           L  + K I+  Y    +         LF  +  +  N      Y++++    G+  + T 
Sbjct: 270 LLDIPKRIIAKYSGKTYR-----DGKLFPILTNQKTNA-----YLKEIADLCGVKKNLTF 319

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           H  RH+FAT  LS G  + S+  +LGH  + TTQIY  + +K     M ++ D+
Sbjct: 320 HLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQLADK 373


>gi|120599713|ref|YP_964287.1| phage integrase family protein [Shewanella sp. W3-18-1]
 gi|120559806|gb|ABM25733.1| phage integrase family protein [Shewanella sp. W3-18-1]
          Length = 339

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 23/143 (16%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           ++ +    G R SEA SL    +++++ T  I+ KG K R VP    + KA+ +      
Sbjct: 199 VVKICLSTGCRWSEAESLRGSQVVNNRITF-IKTKGKKNRTVP----ISKALAD------ 247

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNG 277
                  ++P  RG    PL     + + + ++R  L  P     H LRH+FA+H + NG
Sbjct: 248 -------EIPQSRG----PLFSSCRKAFAQAIKRTGLTFPEGQMTHILRHTFASHFMMNG 296

Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300
           G++  ++ ILGH  +  T  Y +
Sbjct: 297 GNILVLKQILGHADIKETMRYAH 319


>gi|224367178|ref|YP_002601341.1| Phage integrase/recombinase family protein [Desulfobacterium
           autotrophicum HRM2]
 gi|223689894|gb|ACN13177.1| Phage integrase/recombinase family protein [Desulfobacterium
           autotrophicum HRM2]
          Length = 301

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 127/285 (44%), Gaps = 31/285 (10%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           ++ +Y+   R FL FL   + E++     R +++  + AF    + Q    R++   LS 
Sbjct: 22  SVDTYDRAIRTFLDFLGISSPEEL-----RLITHGHVIAFKKFLQDQGRSARTINNRLSA 76

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--LLHTSHETKWI 152
           I S   +L  +++      +N+    K   +  +  E + LT  D V  LL++   +K  
Sbjct: 77  ISSLFNHLIDQQVVK----INVAQGVKRMPVNASRVEAKVLT-PDEVRNLLNSPDLSKLQ 131

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAI 210
             R+ AIL  L+  G R+SE  SL  ++  ++Q    L    KG K   + +   ++ A+
Sbjct: 132 GLRDRAILSTLFFTGCRVSEVCSLKIKDFYEEQGFFVLDFWVKGGKRNRMAINQELQIAL 191

Query: 211 LEYY-------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRY---LGLPLS 259
            +Y        D   F     + LP+  G +       + +R I  L  +Y   +G+   
Sbjct: 192 DQYLTDAGHGPDPASF-----LFLPVKSGYKASDPKRNLSRRTIDHLFNKYANTIGIA-G 245

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            T H+ R +F T  L N   + ++Q  +GH ++ TTQ+Y    +K
Sbjct: 246 ITPHSARATFITQALENNCPIEAVQKTVGHAQIKTTQMYDKRTAK 290


>gi|298531267|ref|ZP_07018667.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508877|gb|EFI32783.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 338

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 119/291 (40%), Gaps = 27/291 (9%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           Q L   +G+S  T+ +Y      FL F +      I    I  LS   I  F+    + +
Sbjct: 13  QYLPRTKGVSSNTILAYRHTFSLFLPFASKTLGRDINSLEIEHLSTQLILDFLDHLESDR 72

Query: 83  IGD-RSLKRSLSGIKSF---LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               R+    L+  KS    +++L          I+++   +    L   L  ++ L ++
Sbjct: 73  NNSARTRGHRLAVFKSLARMIRFLYPEHKLLADRIISIPQKRFPKKLAAFLTHEEVLLVL 132

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D++ L  S        R+  I++LLY  G R  E+ SL        + TL I GKG++ R
Sbjct: 133 DSINLKKSGA-----FRDYTIIHLLYNSGARAEESASLRLDYFDPHKKTLAILGKGNRYR 187

Query: 199 IVPLLPSVRKAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYL 254
            + L P   + +  Y   Y   P  L+ N    LF   R +     G++    R  R+YL
Sbjct: 188 QIELWPKTVQLMSMYIQKYRPRPKPLHQNT---LFLNQRRQGFTRNGIY----RLCRKYL 240

Query: 255 GLPLSTT-------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            L             H  RHS A ++L  G  L  I++ LGH  L +T +Y
Sbjct: 241 SLVFEENRFQGLNPVHCFRHSCAINMLGTGFSLTDIKNHLGHENLQSTMVY 291


>gi|300117727|ref|ZP_07055505.1| Tn554-related, transposase A [Bacillus cereus SJ1]
 gi|298724894|gb|EFI65558.1| Tn554-related, transposase A [Bacillus cereus SJ1]
          Length = 372

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 97/215 (45%), Gaps = 31/215 (14%)

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
           KSFL ++ K K +   N+L ++  +K   +      +Q  T   N+             R
Sbjct: 145 KSFLHHINKNKPSIR-NVLKVKEPRKRIQILTKEQVRQTFTATTNI-------------R 190

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQST-----LRIQGK---GDKIRIVPLLPSVR 207
           ++ ++ LL+  GLRI EALSL  ++ + D        LR +G+   G K++       V 
Sbjct: 191 DAFLIQLLFETGLRIGEALSLYLEDFIFDYKRGHRIRLRDRGELENGAKLKTGEREIFVS 250

Query: 208 KAILEYYD------LCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLST 260
           + +++ YD      +   D+  N      RG   G+P+N    +   ++LR+   + +  
Sbjct: 251 QHLMDLYDDYLYEIIDELDIETNFVFIKLRGRNMGRPMNYSDVESLFKRLRKKTKIDIH- 309

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             H LRH+ AT       D++ +Q  LGH ++ TT
Sbjct: 310 -PHLLRHTHATIYYQETKDIKQVQERLGHAQIQTT 343


>gi|228943437|ref|ZP_04105881.1| Tyrosine recombinase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228976308|ref|ZP_04136779.1| Tyrosine recombinase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228783412|gb|EEM31520.1| Tyrosine recombinase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228816217|gb|EEM62398.1| Tyrosine recombinase [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 357

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 127/304 (41%), Gaps = 42/304 (13%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK---------RRTQKIGD 85
           TL +Y  D R F  +L   +E+ I  + I+ +S++++     K         +  Q + +
Sbjct: 43  TLLNYVYDFRVFFNWLL--SEQIIEFKPIKDISFSDLENLKKKDVENFMRFLKLQQNMQN 100

Query: 86  RSLKRSLSGIKSFLKYL------------------KKRKITTESNILNMRNLKKSNSLPR 127
            S+ R +S +KS  KYL                   K +I  +   LN R  +  + +  
Sbjct: 101 SSVNRKISALKSLFKYLTSLSENEDGECYFYRNVMAKIEIHKDKETLNARAKRMRSKIFH 160

Query: 128 ALNEKQALTLV--DNVLLHTSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIM 182
             ++++ L  V  ++    T H+  +      R+ AIL L  G G+R+SE   L  ++I 
Sbjct: 161 NDDDQEFLNYVKYEHEKALTKHQLFYFLRDKERDVAILSLFLGSGIRVSELADLRMEDIN 220

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKP 237
             +  + +  KG+K   V + P   K + +Y ++      P     N+ L  ++    +P
Sbjct: 221 LKERLIDVIRKGNKEDSVWITPIALKDLEKYMEIRDNKYAPGKELQNVFLSKYKHT-AQP 279

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+    Q  + +  +  G  +S   H LRH+ A  L     D   +   LGH    T  +
Sbjct: 280 LSVRAIQDIVEKYTKAFGKKMS--PHKLRHTLANKLYMEEKDSLQVMQQLGHTSQDTALL 337

Query: 298 YTNV 301
           YT +
Sbjct: 338 YTQL 341


>gi|326204540|ref|ZP_08194397.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
 gi|325985333|gb|EGD46172.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
          Length = 279

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 10/143 (6%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLC 217
           ++ +L    LRISEALSL   ++      LR++ GKG+K RIV +   +   + +Y  L 
Sbjct: 133 VISVLEMTALRISEALSLKISDVNLTARELRVRNGKGNKQRIVYINDQLADILKDYIKLY 192

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
             D        LF G +G PLN  V  +   + +      L  T H LRH + ++ L N 
Sbjct: 193 QPDS------WLFPGRKG-PLNRTVVNKVFAKYKNKTSDSL--TPHQLRHHWCSNALEND 243

Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300
             +  I SI GH  + T  +YTN
Sbjct: 244 FTVAEIASIAGHSNIHTILLYTN 266


>gi|21674396|ref|NP_662461.1| integrase/recombinase-related protein [Chlorobium tepidum TLS]
 gi|21647577|gb|AAM72803.1| integrase/recombinase-related protein [Chlorobium tepidum TLS]
          Length = 86

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 34/46 (73%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            T H LRHS+ATHLL +G DLR IQ +LGH    TT+IYT+V+ K+
Sbjct: 30  VTLHWLRHSYATHLLESGTDLRYIQELLGHKSSKTTEIYTHVSQKS 75


>gi|229552222|ref|ZP_04440947.1| site-specific tyrosine recombinase XerS [Lactobacillus rhamnosus
           LMS2-1]
 gi|229314408|gb|EEN80381.1| site-specific tyrosine recombinase XerS [Lactobacillus rhamnosus
           LMS2-1]
          Length = 358

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 66/319 (20%), Positives = 130/319 (40%), Gaps = 56/319 (17%)

Query: 54  TEEKITIQTIRQLSYTEIRAFIS--------KRRTQKIGDRSLKRSLSGIKSFLKYLKKR 105
           + + + ++T+ +LS  + +AF++            +++  RS+   L GIK+  ++L + 
Sbjct: 50  SPQNVPLETLERLSLRDAQAFVAYLLERPSKTHPNKRMTRRSVALRLVGIKALYRFLTEE 109

Query: 106 KITTES-------NILNMRNLKKSNSLPRALNEK-QALTLVDNVLLHTSHETKWID---- 153
                        N+ N   LK         N K Q +  VD      +   +W+D    
Sbjct: 110 SEPNADGEPYFYRNVWNKVKLKTHAETTTYRNHKLQEMLFVDG---EDARFLQWLDQQYA 166

Query: 154 ---------------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG---D 195
                           RN AI+ LL+G G+R+SE +++  +++  D+ T+++  KG   D
Sbjct: 167 QQLPSKPRAYFEATKERNLAIIALLFGSGVRVSELVNMNLEDLNMDRHTVQVVRKGNFQD 226

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-------PGVFQRYIR 248
           ++     +     A L+               PLF    G+ +N          F+RY  
Sbjct: 227 RVNFADWIDPYLTAYLK--SRTAMIGQQKPTSPLFVTQIGQMVNRIRQNTIEAFFKRYTT 284

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
              R       +T H  RH+  T++ +   D++ +   LG    S T +Y N++ K+G  
Sbjct: 285 AYGR------PSTPHKARHTLGTNIYTVTKDVQQVADQLGQTTTSATDLYINLSDKSGKA 338

Query: 309 WMMEIYDQTHPSITQKDKK 327
            + E+ +    ++ Q  ++
Sbjct: 339 ALREVSETAAKALDQHPQQ 357


>gi|269929227|ref|YP_003321548.1| integrase family protein [Sphaerobacter thermophilus DSM 20745]
 gi|269788584|gb|ACZ40726.1| integrase family protein [Sphaerobacter thermophilus DSM 20745]
          Length = 335

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 8/164 (4%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL 216
           A++  LY  G+R+SE   L  ++I     T  I + KG K R V       +A++ Y+  
Sbjct: 164 AMILFLYRTGVRVSELCGLRRRDIQLADGTASIYRAKGGKSRTVLFDSETAEALVAYW-A 222

Query: 217 CPFDLNLNI-QLPLFRG-----IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
              D    +   P F G     + G+ ++P   +  + QL    G+    T H+ RH  A
Sbjct: 223 ARGDSGRGVGAFPAFSGRDKVGVPGRAISPRTVEHIVAQLCVAAGVENPITPHSFRHGLA 282

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           T L+       ++Q+ILGH   +TT+IY +  +    +   E +
Sbjct: 283 TELVRRRVRESTVQTILGHASPTTTRIYVHKVAAEVAEEYQEAF 326


>gi|260642635|ref|ZP_05416696.2| integrase [Bacteroides finegoldii DSM 17565]
 gi|260621236|gb|EEX44107.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 406

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 78/154 (50%), Gaps = 15/154 (9%)

Query: 166 CGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRI-VPLLPSVRKAILEYYDLCPFDLN 222
           CGL   +   LT +NI  +D++  + I  +   ++  +PLL  + + IL+ Y     D  
Sbjct: 255 CGLAYIDVAHLTQENIITLDNRPWIIINRQKTNVQSNIPLL-EIPQMILDKYKGKTKD-- 311

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
            N  LP+   +  + +N      Y++++    G+    + H  RH+FAT LLS G  + S
Sbjct: 312 -NRLLPV---LSNQKINA-----YLKEIADLCGIKKRLSYHLARHTFATMLLSKGVPIES 362

Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +  +LGH  + TTQIY  + +K     MM++ D+
Sbjct: 363 VSKMLGHTNIKTTQIYARITNKKIEQDMMQVADK 396


>gi|167772512|ref|ZP_02444565.1| hypothetical protein ANACOL_03890 [Anaerotruncus colihominis DSM
           17241]
 gi|167665615|gb|EDS09745.1| hypothetical protein ANACOL_03890 [Anaerotruncus colihominis DSM
           17241]
          Length = 305

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 11/149 (7%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS-VRKAIL 211
           + R S +L  +   G+R+SE L +T + +   ++ +R +GK   I    LLP  +R+A+ 
Sbjct: 147 NERLSLVLQTICSTGIRVSELLFITAEAVRGGRAVVRCKGKTRYI----LLPERLRRALS 202

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFA 270
            Y              P+F    GKPL+     R ++ L +  G+       H LRH FA
Sbjct: 203 AY-----LAKQKRAAGPVFITRTGKPLDRSNIWRDMKALCKRAGVKAGKVFPHNLRHLFA 257

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               S   DL  +  ILGH  ++TT+IYT
Sbjct: 258 RTFYSLEKDLSRLADILGHTNVATTRIYT 286


>gi|49146367|ref|YP_025475.1| putative site-specific recombinase [Caedibacter taeniospiralis]
 gi|40458335|gb|AAR87083.1| putative site-specific recombinase [Caedibacter taeniospiralis]
          Length = 282

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 110/240 (45%), Gaps = 19/240 (7%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           +++ T++R + S         +++ R +  ++SF+ +L    I   +N   +  L K N 
Sbjct: 49  KITTTDLRQYKSMLIDHPFKPKTINRRIGSLRSFINWL--WDIGEINNKFPLPKLVKENQ 106

Query: 125 -LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM- 182
             P  L++ Q   L+        H  ++ + R+++I+ +    G+R+ E ++L   ++  
Sbjct: 107 PTPMWLDKNQQHALM-------RHLERYGNERDASIISIFMNTGMRVQEFVNLKWIDVTL 159

Query: 183 -DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
            D +  + I   K +K R +PL    R A ++      F  +      + +G RG     
Sbjct: 160 SDKKGIIMIRHSKANKYREIPLNKDARYAFVK----LGFKTHAGSDEYVLQGQRGNITTR 215

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           G+ Q  I++   Y  L    + H LRH+F  +L++ G  L  +  + GH  L TT+IY +
Sbjct: 216 GI-QMMIKRRVAYTDLDY-LSPHMLRHTFCKNLVNAGVSLEKVAVLAGHETLETTKIYCH 273


>gi|258650728|ref|YP_003199884.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258553953|gb|ACV76895.1| integrase family protein [Nakamurella multipartita DSM 44233]
          Length = 371

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 133/303 (43%), Gaps = 43/303 (14%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            WL +++  + + + T  +YE + R  ++        +I  + + QLS  ++R  I   R
Sbjct: 76  EWLTHMK--QHVRRSTWVAYESNARLHIV-------PRIGRKKLSQLSVRDVRLMIDGLR 126

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
               G R+++   + +++ L++  + ++ T  N+  M  +++    P     K+ L++ +
Sbjct: 127 KDGKGKRTVQYVHATLRAALEHAYREELVTR-NVAKMVRVERPTPTP-----KEPLSVAE 180

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-------RIQG 192
              L T+      D  + A+  ++   GLR SE   L   N+  +  TL       R+ G
Sbjct: 181 ARRLLTATR----DDEDHALWVVMLLLGLRRSEVCGLRWDNVDLENRTLSVTHSVQRVDG 236

Query: 193 KGDKI--------RIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           K  ++        R VPL   V +A++ +   + P    L   + +F    G P+ P   
Sbjct: 237 KLRELPTKTRRSTRTVPLPAMVHQALVTHRAAMMPTSQYLPEPVYVFGTKIGTPMEPRNL 296

Query: 244 QRYIRQLRRYLGL---PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYT 299
            R    L    G+   PL    H LRHS  + LL+ G   R++  I+GH  +  T  +Y 
Sbjct: 297 TRRWVTLAERQGIRRVPL----HALRHSCVSLLLAQGVHPRTVMEIVGHSAIEMTMNVYG 352

Query: 300 NVN 302
           +VN
Sbjct: 353 HVN 355


>gi|206972947|ref|ZP_03233869.1| integrase family protein [Bacillus cereus AH1134]
 gi|206731831|gb|EDZ49031.1| integrase family protein [Bacillus cereus AH1134]
          Length = 390

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 67/153 (43%), Gaps = 10/153 (6%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           N  IL  L   G RI E  +   +++  D +  L++ GKGDK+R + +   + + I E  
Sbjct: 218 NYTILLALASTGARIQELCTARVKDLHYDGKYWLKVTGKGDKVRELFISEHLYQCICEMR 277

Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266
               F   L+   + P+F   RG   N       +  + +   L          TAHT R
Sbjct: 278 LRRGFQTVLDKGDESPVFINQRGNTYNSKTLSNQVTDMIKKTNLEFLLYRENPVTAHTFR 337

Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
           H+FA   +  G  DL  +   LGH  + TT+IY
Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370


>gi|282858446|ref|ZP_06267625.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282588762|gb|EFB93888.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 345

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 141/318 (44%), Gaps = 51/318 (16%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + + I+R L    L++Y+      L  L  Y ++K  +  I  LS  + +AFI       
Sbjct: 62  ERIGIDRALKTFKLRTYQ------LSLLREYVQKKHKVSDI-PLSQLD-KAFIEGFEYYL 113

Query: 83  IGDRSLKRS-LSGIKSFLKYLKKRKITTESNILNMR-----NLKKSNSLPRALNEKQALT 136
             DR LKRS +S   S L+ + +  +  +  +LN       + ++    PR++ +++   
Sbjct: 114 TIDRRLKRSSISSTVSTLQTIVR--MAVKKGVLNFYPFLGYSYERPKGEPRSITKEELEH 171

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKG 194
           ++D        E +W + R    L++ + C  GL IS+  +L  +NI+ ++  L I+G+ 
Sbjct: 172 IIDL-------EIEWENYRIVRDLFV-FSCFTGLAISDVRNLREENIVTEEGKLCIKGRR 223

Query: 195 DKIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL----NPGVFQRYI 247
            K +    V +LP     +  Y                 RGIR   +       +    +
Sbjct: 224 IKTKTPYRVQVLPPALTIMNRY-----------------RGIRAGFVFDVPTTDIVLNGM 266

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
             ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQ+Y  V+S+  
Sbjct: 267 HYIQRNIGMETPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERI 326

Query: 307 GDWMMEIYDQTHPSITQK 324
              M  I  +   + T K
Sbjct: 327 HRDMQAIQQRIQDTFTLK 344


>gi|229073564|ref|ZP_04206686.1| Integrase-recombinase [Bacillus cereus F65185]
 gi|228709566|gb|EEL61618.1| Integrase-recombinase [Bacillus cereus F65185]
          Length = 390

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 67/153 (43%), Gaps = 10/153 (6%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           N  IL  L   G RI E  +   +++  D +  L++ GKGDK+R + +   + + I E  
Sbjct: 218 NYTILLALASTGARIQELCTARVKDLHYDGKYWLKVTGKGDKVRELFISEHLYQCICEMR 277

Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266
               F   L+   + P+F   RG   N       +  + +   L          TAHT R
Sbjct: 278 LRRGFQTVLDKGDESPVFINQRGNTYNSKTLSNQVTDMIKKTNLEFLLYRENPVTAHTFR 337

Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
           H+FA   +  G  DL  +   LGH  + TT+IY
Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370


>gi|158340897|ref|YP_001522065.1| tyrosine recombinase XerC [Acaryochloris marina MBIC11017]
 gi|158311138|gb|ABW32751.1| tyrosine recombinase XerC [Acaryochloris marina MBIC11017]
          Length = 351

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 3/150 (2%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR-IVPLLPSVRKAILE 212
           +R+ A+L LL+  GLR SE +    ++   +Q  L I GKG   R  + L  S   AI E
Sbjct: 171 SRDFAMLTLLWEAGLRRSELVGCDVRHFDSEQKRLSILGKGRNEREWIDLTESGVLAISE 230

Query: 213 YYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS-FA 270
           + +L   + L   + + L R   G  L+     R +R L +  G+  +   H +RHS   
Sbjct: 231 WLELREVYGLTEPLFISLDRANWGSRLSGTSVYRIVRALAKKAGVSENFGPHKVRHSGTT 290

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           T+L   GGDLR  Q+   H  L+T + Y +
Sbjct: 291 TYLEMTGGDLRGAQAYSRHANLNTLKFYDD 320


>gi|145301497|ref|YP_001144336.1| resolvase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142856379|gb|ABO92588.1| resolvase [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 256

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 82/170 (48%), Gaps = 30/170 (17%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-------TL--RIQGKG-----DKI- 197
           D +   ++  L+  G RI+EAL+LTP +   D         TL  R +GKG     D + 
Sbjct: 69  DLQRRVLIATLWNTGARINEALALTPGDFELDGGRPFVVLRTLKQRSRGKGRPRAGDAVK 128

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ----LR-R 252
           R+VPLL  V   +   Y            + L RG R  P+     + ++++    LR R
Sbjct: 129 RLVPLLDPVFAQLAREYLAT---------VKLARGARIWPVTDQTVRNWLKEADTALRGR 179

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNV 301
            + L +  T H  RH+FA HLL  G   ++ +Q+ LGH  L +T++YT V
Sbjct: 180 GVHLVVPLTPHVFRHAFAMHLLLQGNLHIKRLQAYLGHRSLKSTEVYTQV 229


>gi|320450087|ref|YP_004202183.1| transposase [Thermus scotoductus SA-01]
 gi|320150256|gb|ADW21634.1| transposase [Thermus scotoductus SA-01]
          Length = 380

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 129/324 (39%), Gaps = 50/324 (15%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + WL     E+ L+  TL +Y  +   FL +L      +  +Q IR L   +IR  + + 
Sbjct: 71  EAWLAR--KEKSLAAKTLANYRREVGYFLKYLG-----QKRLQDIRPL---DIRQALDRM 120

Query: 79  RTQKIGDRSLKRSLSGIKSFLKY-----LKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             + +G R+ K++L  +++  K      L  R  T    +   R  K   SL    +E +
Sbjct: 121 AAEGLGVRAQKKALLHLRALFKEALGLELVARDPTAAVRLKAERRPKAGRSL--EPHEAE 178

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-- 191
           AL    +          W        L L    GLR  EAL L   +I  +  TL ++  
Sbjct: 179 ALLAAFDA---------WPTWGVGMALRLCLALGLRAGEALGLKWGDIDLEAGTLSVRRA 229

Query: 192 -----GKGD--------KIRIVPLLPSV------RKAILEYYDLCPFDLNLNIQLPLFRG 232
                G+G           R +P+  +       R   L    L P DL      P  + 
Sbjct: 230 WTCLGGRGHLTTPKTSRAQRTIPVPRATLGRLRDRWETLVAQGLRPKDLKEWWVFPSEKD 289

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
              +PLNP      +R++   LG+P     H LRHS+ + LL+NG  L  +   +GH   
Sbjct: 290 P-SRPLNPHSLNHALRKMTAKLGIP-PVRVHDLRHSYGSLLLANGAPLELVAERMGHASP 347

Query: 293 STT-QIYTNVNSKNGGDWMMEIYD 315
           + T  +Y ++ +     W+++  D
Sbjct: 348 NVTLSVYRHLLAHERTAWVVDPED 371


>gi|221209968|ref|ZP_03582949.1| phage integrase [Burkholderia multivorans CGD1]
 gi|221170656|gb|EEE03122.1| phage integrase [Burkholderia multivorans CGD1]
          Length = 416

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 78/192 (40%), Gaps = 34/192 (17%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSVR 207
           R   +  LLY  GLRI+EA   T             D+  L + GKG + R+VP    + 
Sbjct: 227 RARWVFTLLYLGGLRITEAAETTMGRFFCRRDASGRDRWWLDVTGKGGRRRLVPATDELM 286

Query: 208 KAILEY---YDLCPF---DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL--- 258
             +  Y   + L P    D +  + LP   G   +PL      R ++Q+ R+    L   
Sbjct: 287 TELARYRRAHGLAPLPVADEDTPLVLPF--GQARRPLTRAALHRIVKQVFRHAADRLRAQ 344

Query: 259 ------------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
                         +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +    
Sbjct: 345 GDAGAEQARVLEQASAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHADD--- 401

Query: 307 GDWMMEIYDQTH 318
            DW     ++ H
Sbjct: 402 -DWRHRETEEKH 412


>gi|258539633|ref|YP_003174132.1| site-specific tyrosine recombinase XerS [Lactobacillus rhamnosus Lc
           705]
 gi|257151309|emb|CAR90281.1| Tyrosine recombinase xerC [Lactobacillus rhamnosus Lc 705]
          Length = 370

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 66/319 (20%), Positives = 130/319 (40%), Gaps = 56/319 (17%)

Query: 54  TEEKITIQTIRQLSYTEIRAFIS--------KRRTQKIGDRSLKRSLSGIKSFLKYLKKR 105
           + + + ++T+ +LS  + +AF++            +++  RS+   L GIK+  ++L + 
Sbjct: 62  SPQNVPLETLERLSLRDAQAFVAYLLERPSKTHPNKRMTRRSVALRLVGIKALYRFLTEE 121

Query: 106 KITTES-------NILNMRNLKKSNSLPRALNEK-QALTLVDNVLLHTSHETKWID---- 153
                        N+ N   LK         N K Q +  VD      +   +W+D    
Sbjct: 122 SEPNADGEPYFYRNVWNKVKLKTHAETTTYRNHKLQEMLFVDG---EDARFLQWLDQQYA 178

Query: 154 ---------------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG---D 195
                           RN AI+ LL+G G+R+SE +++  +++  D+ T+++  KG   D
Sbjct: 179 QQLPSKPRAYFEATKERNLAIIALLFGSGVRVSELVNMNLEDLNMDRHTVQVVRKGNFQD 238

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-------PGVFQRYIR 248
           ++     +     A L+               PLF    G+ +N          F+RY  
Sbjct: 239 RVNFADWIDPYLTAYLK--SRTAMIGQQKPTSPLFVTQIGQMVNRIRQNTIEAFFKRYTT 296

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
              R       +T H  RH+  T++ +   D++ +   LG    S T +Y N++ K+G  
Sbjct: 297 AYGR------PSTPHKARHTLGTNIYTVTKDVQQVADQLGQTTTSATDLYINLSDKSGKA 350

Query: 309 WMMEIYDQTHPSITQKDKK 327
            + E+ +    ++ Q  ++
Sbjct: 351 ALREVSETAAKALDQHPQQ 369


>gi|227529280|ref|ZP_03959329.1| site-specific tyrosine recombinase XerS [Lactobacillus vaginalis
           ATCC 49540]
 gi|227350811|gb|EEJ41102.1| site-specific tyrosine recombinase XerS [Lactobacillus vaginalis
           ATCC 49540]
          Length = 355

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 10/170 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI+ L+ G G+R+SEA ++   ++   QS L +  KG +   VP+ P   + I  Y 
Sbjct: 189 RDIAIITLILGTGVRVSEAANVNLADLNLKQSLLDVVRKGGQKDSVPIAPWAVQYIKAYL 248

Query: 215 DL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           ++          +  + L L+ G   + +     ++ +++     G PL  T H LRH+ 
Sbjct: 249 EIRAKRYHALKKDTALFLTLYHG-ETRRMTANAIEKMVKKYSTAFGHPL--TPHKLRHTL 305

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           A+ + +   D   +   LG    S T +YT+V+ K     + EI +  HP
Sbjct: 306 ASEMYNVTKDQVLVAQQLGQKGTSATDLYTHVDQKKQRQALDEISE--HP 353


>gi|327404978|ref|YP_004345816.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327320486|gb|AEA44978.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 419

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 10/118 (8%)

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPLLP +   I+E Y    + +  N  LP+    R        +  Y+++L    G+   
Sbjct: 298 VPLLP-IPLQIIEKYKNDEYCIKSNKLLPVNSNQR--------YNSYLKELADICGIKKH 348

Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            T H  RH+FAT + L+NG  + ++ S+LGH  + TTQ+Y  V  K   D M  + D+
Sbjct: 349 LTTHIARHTFATTVTLANGVPIETVSSMLGHKSIRTTQVYAKVVEKKVSDDMKTLRDK 406


>gi|293375666|ref|ZP_06621939.1| phage integrase, N-terminal SAM domain protein [Turicibacter
           sanguinis PC909]
 gi|325842952|ref|ZP_08167804.1| phage integrase, N-terminal SAM-like domain protein [Turicibacter
           sp. HGF1]
 gi|292645717|gb|EFF63754.1| phage integrase, N-terminal SAM domain protein [Turicibacter
           sanguinis PC909]
 gi|325489478|gb|EGC91846.1| phage integrase, N-terminal SAM-like domain protein [Turicibacter
           sp. HGF1]
          Length = 326

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 65/302 (21%), Positives = 130/302 (43%), Gaps = 21/302 (6%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L ++   S  T  SYE   R  L F      E+I ++ I  ++  ++  ++   + +   
Sbjct: 24  LNLKASSSHYTAISYE---RDILDFFQVDYIEQIQLEQIIAVNMFDVEHYLLDLKGKGCA 80

Query: 85  DRSLKRSLSGIKSFLKYL-KKRKITTESNILNMR---NLKKSNSLPRALNEKQALTLVDN 140
             ++ R +S + S  K+L K +   T  ++L      NLK  +  P+  N++      D 
Sbjct: 81  SATINRKVSSLSSLYKWLLKYQDNRTGKSLLYFNPFGNLK--DEKPKVNNKETEFLTQDE 138

Query: 141 V--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDK 196
              L+      K ++ RN  I+ L     LR SE +++  ++I    +   + +  KG+K
Sbjct: 139 CQRLISIFDTRKIVELRNKTIIVLALTTALRKSEMINIKLKDITTYGEYDVIHVMRKGNK 198

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-----RGKPLNPGVFQRYIRQLR 251
             +V +  S+++ I EY +    D+  + +  LF G        + L+P      ++   
Sbjct: 199 KDMVKIQSSLKRLIEEYIERTNRDMIQDAESYLFIGHSRNKRNNEKLDPSSLNYMLKSTC 258

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK---NGGD 308
           +  G+      H+ RH+  T  ++ G  +  ++    H  ++TT  Y +   K   N GD
Sbjct: 259 KKAGIDKHLKVHSTRHTAITLAITGGASIEKVRDFAAHQNIATTNRYVHSIDKLKDNAGD 318

Query: 309 WM 310
           ++
Sbjct: 319 YI 320


>gi|158339285|ref|YP_001520462.1| phage integrase [Acaryochloris marina MBIC11017]
 gi|158309526|gb|ABW31143.1| phage integrase [Acaryochloris marina MBIC11017]
          Length = 335

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 90/196 (45%), Gaps = 14/196 (7%)

Query: 21  WLQNLEI--ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS-YTEIRAFISK 77
           W++  E    R +S  T ++YE D +QF+     +T++     T R L  Y         
Sbjct: 38  WMRVEEFMRSREISSNTRKAYERDLKQFMD----WTDKGWHEITARDLDRYKNYLKVEPN 93

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +R Q   + ++ R+L+ ++ F K+L  R   T+   L +  LK    LP+  ++ +   L
Sbjct: 94  QRGQLRKNATINRNLAALQGFFKWLTVRDYITKDPTLLLEKLKSDPVLPQEFSQDEVDNL 153

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
              +     H       R+ A+L+L+   GLR SE   L   +    + T+R+  K D +
Sbjct: 154 YQAICDRGFHAF-----RDRALLHLI-DHGLRASEIHRLNVGDYDGQRITIRV-AKADSV 206

Query: 198 RIVPLLPSVRKAILEY 213
             VPLL   RKAI +Y
Sbjct: 207 GTVPLLKKARKAIDQY 222


>gi|15595925|ref|NP_249419.1| bacteriophage integrase [Pseudomonas aeruginosa PAO1]
 gi|9946613|gb|AAG04117.1|AE004508_2 probable bacteriophage integrase [Pseudomonas aeruginosa PAO1]
          Length = 327

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 26/157 (16%)

Query: 152 IDARNSA-----ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
           +DAR ++     +  +    G R  EA +LTP+ +  + + +    K  ++R VP+   +
Sbjct: 176 LDARTTSPHPKMVARICLATGARWGEAQALTPERLKGN-TVIFANTKSKRVRSVPISEEL 234

Query: 207 RKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              +  ++    PF   L                 GVF+  +  L   + LP    +H L
Sbjct: 235 GADLRRHWQTHGPFTNCL-----------------GVFRLVL--LSTSIKLPKGQASHVL 275

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           RH+FA+H + NGG + ++Q ILGH  LS T  Y +++
Sbjct: 276 RHTFASHFIMNGGHIVTLQHILGHASLSMTMRYAHLS 312


>gi|184155346|ref|YP_001843686.1| integrase [Lactobacillus fermentum IFO 3956]
 gi|183226690|dbj|BAG27206.1| integrase [Lactobacillus fermentum IFO 3956]
          Length = 292

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 121/281 (43%), Gaps = 19/281 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q WL     ++G +KLT+ SY  D R    +L   T   +T    +Q+    +  ++   
Sbjct: 16  QEWL----TKKGGAKLTIASYLTDLRDTAAYL---TSRGVT--NWQQVDRATLTVYLQSL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     +++R +S ++ F  YL+         +  ++  +     P  L  ++A  L 
Sbjct: 67  NDKGRRTTTIQRRISSLRRFYVYLQVTGQVNHDPVALLKAKQTPRLAPVGLTPQEADLLP 126

Query: 139 DNVLLHTSHETKWID-ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           D+V        K +   RN A++ LL   G R +E   L   + +D +  +   G+  + 
Sbjct: 127 DHV------PGKGVARERNRALVALLVATGARANELRDLQTGD-LDLELGVVYLGQSSR- 178

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VPL     +  L  Y     D +   +  +F   RG+PL+       +    +   + 
Sbjct: 179 RLVPLNEQA-QTYLTTYLTARADQSATDEGYVFLNNRGQPLSRQSIWEIVNATGQRANIE 237

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            + T   +R  FA  LL++G DL  +Q ++GH  + TTQ+Y
Sbjct: 238 GAVTPQRVRDGFAYRLLAHGADLSLVQQLMGHQSILTTQVY 278


>gi|170769298|ref|ZP_02903751.1| integrase [Escherichia albertii TW07627]
 gi|300901680|ref|ZP_07119738.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|170121950|gb|EDS90881.1| integrase [Escherichia albertii TW07627]
 gi|300354904|gb|EFJ70774.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
          Length = 330

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 67/149 (44%), Gaps = 24/149 (16%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           DAR  AIL L    G R SEA  L  ++I+ ++ T     K  K R VP+  SV      
Sbjct: 180 DARRVAILCL--STGARWSEASELRGEHIVGNRVTF-FNTKNGKSRSVPVADSV------ 230

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-GLPLSTTAHTLRHSFAT 271
                         +PL +  R   L    + ++   L+     LP     H +RH+FAT
Sbjct: 231 --------------VPLIKTRRTGLLYQVDYLKFREILQEVKPDLPKGQATHVMRHTFAT 276

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           H + NGG++ ++Q ILGH  +  T  Y +
Sbjct: 277 HFMMNGGNIVTLQRILGHATIQQTMTYAH 305


>gi|17233219|ref|NP_490309.1| integrase/recombinase [Nostoc sp. PCC 7120]
 gi|17135741|dbj|BAB78287.1| integrase/recombinase [Nostoc sp. PCC 7120]
          Length = 319

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 91/196 (46%), Gaps = 25/196 (12%)

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
           +++++++  + LP  L + + +T     LL    +   I  R++A++ +L  CGLR SEA
Sbjct: 115 IDLKSVRGDSGLPGRLIKPEEIT----SLLRNCLQDNVIGIRDAALIGILSSCGLRRSEA 170

Query: 174 LSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYD---------LCPFDLNL 223
           ++L   +   + + L + QGKG K R V L P V   + ++           +CP     
Sbjct: 171 VALEMNDFNREDNLLTVRQGKGGKSRRVYLPPGVVGILNDWLKIRGKSSGALICPVKRGG 230

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRS 282
           +I +        + L         ++     G+ P S   H  R +F T LL +G D+ +
Sbjct: 231 HIHI--------QHLTDQAVMAICQKRADSTGIKPFS--PHDFRRTFVTRLLESGIDVLT 280

Query: 283 IQSILGHFRLSTTQIY 298
           +  + GH  L+TTQ Y
Sbjct: 281 VSQLAGHVNLATTQKY 296


>gi|238023303|ref|YP_002907536.1| Phage integrase family protein [Burkholderia glumae BGR1]
 gi|238023496|ref|YP_002907729.1| Phage integrase family protein [Burkholderia glumae BGR1]
 gi|238025678|ref|YP_002909910.1| Phage integrase family protein8 [Burkholderia glumae BGR1]
 gi|237880343|gb|ACR32674.1| Phage integrase family protein8 [Burkholderia glumae BGR1]
 gi|237880356|gb|ACR32686.1| Phage integrase family protein [Burkholderia glumae BGR1]
 gi|237880549|gb|ACR32878.1| Phage integrase family protein [Burkholderia glumae BGR1]
          Length = 611

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 81/203 (39%), Gaps = 56/203 (27%)

Query: 153 DARNSAILYLLYG-CGLRISEALSLTPQNIM-----DDQST---LRIQGKGDKIRIVPLL 203
           D R +  L LL G  GLRI EA+++    +      DD      LR+ GKG K RIVPL 
Sbjct: 395 DWRVARALVLLMGDAGLRIEEAVTVERGGLQWWPAEDDTPATWMLRLIGKGSKERIVPLT 454

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL------------------------- 238
               +A+ E++     D  L++  P      G PL                         
Sbjct: 455 EDTVQALREHWQ----DRGLDLDAP-GAAADGVPLVAPTVVPPTPASREKFGVTETGEVT 509

Query: 239 -----NPGVFQRYI-RQLRRYLG-LP----------LSTTAHTLRHSFATHLLSNGGDLR 281
                 P   +R + R LRR L  LP           +T+ H  RH+F T   + G  + 
Sbjct: 510 RVAGYTPRAARRVVTRALRRLLEQLPDWEESARRQLAATSPHAFRHTFGTQSAAAGMAIE 569

Query: 282 SIQSILGHFRLSTTQIYTNVNSK 304
            +Q +LGH  L TT IY N   +
Sbjct: 570 VLQQVLGHGSLQTTTIYVNAEQQ 592


>gi|28373036|ref|NP_783718.1| Orf81 [Yersinia enterocolitica]
 gi|32470332|ref|NP_863561.1| hypothetical protein pYVe8081_p56 [Yersinia enterocolitica]
 gi|122815850|ref|YP_001004116.1| putative resolvase/recombinase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|14579390|gb|AAK69267.1|AF336309_62 unknown [Yersinia enterocolitica]
 gi|23630608|gb|AAN37564.1| Orf81 [Yersinia enterocolitica]
 gi|121663724|emb|CAL10093.1| putative resolvase/recombinase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|310923273|emb|CBW54739.1| p64 in pYVa127/90, site-specific recombinase homologous to
           XerD/IntI [Yersinia enterocolitica (type O:8)]
          Length = 244

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 95/233 (40%), Gaps = 37/233 (15%)

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           S S I  +  Y K       +  L    LK   SLPR L   +   L+D +         
Sbjct: 13  SRSAITPYFNYEK-------AVALRRMALKAGASLPRYLLAPEITVLLDYL--------- 56

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-------TLRIQGKGDK------- 196
             D R   +   L+  G RI+E L LTP +   D +       TL+ + +G         
Sbjct: 57  -PDLRQRLLFDTLWNTGARINECLVLTPGDFELDGAGPFVTLKTLKQRHRGPGRPENGEA 115

Query: 197 -IRIVPLL-PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
             RIVPL  P+  + + EY       + +  + PL+           +     R  R  +
Sbjct: 116 LKRIVPLSDPAYVRRLQEYAA----TMKITRRKPLWPMKSDDTARNWLKAAVQRAERDGV 171

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
              +  T HT RHSFA HLL NG   + +Q+ +GH    +T+IYT + + + G
Sbjct: 172 TFTIPITPHTFRHSFAMHLLQNGLPFKVLQAYMGHQDTKSTEIYTRIFALDVG 224


>gi|56475688|ref|YP_157277.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|56311731|emb|CAI06376.1| phage-related integrase [Aromatoleum aromaticum EbN1]
          Length = 417

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 133/304 (43%), Gaps = 20/304 (6%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P + +  + +E + + ++++  RGL+  T  S     R+ L+    + E++I +  +R  
Sbjct: 114 PTMRTTPVDEELRRYDEHMDHIRGLAPKTRSSALRIVRRLLV--TRFGEDEIDVAAVRP- 170

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNS 124
               +R F +++        +    ++ ++ + +Y           I  ++     +  S
Sbjct: 171 --DHVRRFFAQQAKLYSKPANAGTVVAALRGYFRYRASLGDAVHGLIGAVSYPANWQLAS 228

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP+ L  ++   LV + L       +    R  AI+      GLR  E   L+  +I   
Sbjct: 229 LPKTLTTEEVEQLVGS-LGQAGRSLR----RADAIVRCALDLGLRSGEVARLSLDDIDWR 283

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGI--RGKPLNP 240
             T+ ++  KG    ++PL  +   AI  Y     P   N  I     R +  R +P  P
Sbjct: 284 AGTITVRHTKGRHDDVLPLPVTTGAAIAAYLKHERPKTHNRAI---FVRHVAPRDQPAGP 340

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            + ++ IRQ  +  GLP  T +H LRH+ A  LL+ G  L+ +  +L H  L+TT IY  
Sbjct: 341 DLVRKTIRQAFKRAGLPY-TRSHLLRHTMANRLLAGGASLKEVADVLRHRSLNTTLIYAK 399

Query: 301 VNSK 304
           ++S+
Sbjct: 400 LDSR 403


>gi|49087894|gb|AAT51509.1| PA0728 [synthetic construct]
          Length = 328

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 26/157 (16%)

Query: 152 IDARNSA-----ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
           +DAR ++     +  +    G R  EA +LTP+ +  + + +    K  ++R VP+   +
Sbjct: 176 LDARTTSPHPKMVARICLATGARWGEAQALTPERLKGN-TVIFANTKSKRVRSVPISEEL 234

Query: 207 RKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              +  ++    PF   L                 GVF+  +  L   + LP    +H L
Sbjct: 235 GADLRRHWQTHGPFTNCL-----------------GVFRLVL--LSTSIKLPKGQASHVL 275

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           RH+FA+H + NGG + ++Q ILGH  LS T  Y +++
Sbjct: 276 RHTFASHFIMNGGHIVTLQHILGHASLSMTMRYAHLS 312


>gi|288801474|ref|ZP_06406926.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331555|gb|EFC70041.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 397

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 18/156 (11%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MD-DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
            L+ C  GL   +  +LT  NI  MD  Q  +  + K D +  + LL  + K I+E Y  
Sbjct: 224 FLFSCFTGLAYVDVANLTADNIITMDGKQWIVTARKKTDTLSHILLL-DIPKMIIEKYAG 282

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
           C  +  L   +P+    R           Y++++    G+  + T H  RH+FAT +L+ 
Sbjct: 283 CAKNGRL---IPILSNQR--------MNSYLKEIADVCGINKNLTFHMARHTFATMMLTK 331

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGDWMM 311
           G  + S+  +LGH  ++TTQ+Y  + N K   D +M
Sbjct: 332 GVPVESVSKMLGHSSITTTQLYARITNKKIENDMLM 367


>gi|91209996|ref|YP_539982.1| putative phage integrase [Escherichia coli UTI89]
 gi|91071570|gb|ABE06451.1| putative phage integrase [Escherichia coli UTI89]
 gi|332342335|gb|AEE55669.1| phage integrase [Escherichia coli UMNK88]
          Length = 330

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 67/149 (44%), Gaps = 24/149 (16%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           DAR  AIL L    G R SEA  L  ++I+ ++ T     K  K R VP+  SV      
Sbjct: 180 DARRVAILCL--STGARWSEASELRGEHIVGNRVTF-FNTKNGKSRSVPVADSV------ 230

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-GLPLSTTAHTLRHSFAT 271
                         +PL +  R   L    + ++   L+     LP     H +RH+FAT
Sbjct: 231 --------------VPLIKTRRTGLLYQVDYLKFREILQEVKPDLPKGQATHVMRHTFAT 276

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           H + NGG++ ++Q ILGH  +  T  Y +
Sbjct: 277 HFMMNGGNIVTLQRILGHATIQQTMTYAH 305


>gi|228949488|ref|ZP_04111742.1| Integrase-recombinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228810211|gb|EEM56578.1| Integrase-recombinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 390

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 10/153 (6%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           N  I+  L   G RI E  +   +++  D +  L+++GKGDK R + +   + + I E  
Sbjct: 218 NYTIILALASTGARIQELCTARVKDLHYDGKYWLKVRGKGDKFRELFVSEHLYQCICEVR 277

Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266
               F   L    + PLF   RG   N       +  + +   L          TAHT R
Sbjct: 278 RRRGFQTVLEKGDESPLFINQRGSAYNSKTLSNQVTDMIKKTNLEFLQYRENPVTAHTFR 337

Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
           H+FA   +  G  DL  +   LGH  + TT+IY
Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370


>gi|222080175|ref|YP_002540038.1| integrase/recombinase [Agrobacterium vitis S4]
 gi|221738820|gb|ACM39599.1| integrase/recombinase [Agrobacterium vitis S4]
          Length = 408

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 126/297 (42%), Gaps = 34/297 (11%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L+ E   W +    +RGL++ TL +Y      F+  L           T        IRA
Sbjct: 121 LVAEFAAWARE---QRGLAETTLATYLGTITPFIDTLG---------DTPAIYDAATIRA 168

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNE 131
           ++ +R  + +    +K    GI++FL++L             M N+   +  S+PR L +
Sbjct: 169 YMIER-AKAVSVARMKGISVGIRAFLRFLIATGRCRPGLDHAMPNVAGWRLASIPRFLPD 227

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
                 +  ++   + E +    R+ AI+ LL   GLR SE   L   +I   Q ++R+ 
Sbjct: 228 AD----IARIIGACNGERR---LRDRAIILLLVRLGLRASEVARLGFGDIDWRQGSIRLF 280

Query: 192 GKGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           GKG +  ++PL   +  A+L Y +     L    L +    PL      +P++    +  
Sbjct: 281 GKGRREELLPLTQEIGDALLAYIERGRPALAVPSLFITEYAPL------RPIDRITVKCL 334

Query: 247 I-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           + R L+R         AH LRHS AT +L +G  L  + ++L H     T  Y  V+
Sbjct: 335 VKRALKRGGVESHYKGAHILRHSAATAMLRHGVSLAHVGTVLRHRSPEMTAHYAKVD 391


>gi|326791264|ref|YP_004309085.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326542028|gb|ADZ83887.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 314

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 142/307 (46%), Gaps = 36/307 (11%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q ++ +LE E+ LS  T+++Y  D  QF      +T++K     +  L++ + + + 
Sbjct: 5   KAIQYFISSLEAEQ-LSSHTIKAYLQDLNQF----KNWTQKK----EVDDLNFEDFQDYF 55

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE---SNILNMRNLKKSNSLPRALNEK 132
            +    K+   S+KR    +  F K+  ++K+ TE     I  +R+  K N +P+ +  +
Sbjct: 56  IE--ISKLKMTSIKRKRVVMHRFFKFCYRKKLCTEKLHEYIDPIRS--KKNVVPKEVLSR 111

Query: 133 QALTLVDNVLLHTSHETK------------WIDARNSAILYLLYGCGLRISEALSLTPQN 180
           + ++L+ + L     + K            +   RN  ++ +L   G R  E ++L  Q+
Sbjct: 112 EEISLIFDFLKKEEKQYKLKVNNTYYDYLYYCSLRNQLLISILLYTGCRAHEVVALKKQD 171

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP--- 237
           I   Q+T+ +  KG K   VP+   ++KA L+ Y+     L+L +Q  L       P   
Sbjct: 172 INLLQNTITLFTKGGKYNQVPIHDELKKA-LDNYNESISTLSLGLQNLLQESHYLFPSKT 230

Query: 238 -LNPGVFQRYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
             N  +  R +  L + L         AH  RH+FA++ ++   D+ +I S++ H   S 
Sbjct: 231 DSNNYMPTRTLHDLMKKLSAATGRHIHAHLFRHTFASYCIAANMDISTISSLISHSNPSI 290

Query: 295 T-QIYTN 300
           T  IYT+
Sbjct: 291 TLSIYTH 297


>gi|325297661|ref|YP_004257578.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317214|gb|ADY35105.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 432

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 15/142 (10%)

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSVRKAILEYYDLCPFDLN 222
           CGLRIS+   L  +++  D+   R+     K +    +PL     K + E  D  P DL 
Sbjct: 289 CGLRISDVKRLQWKDVFIDKGQYRLAVSMKKTKEPIYLPLSSEALKWMPERGDKTPDDLV 348

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
            +  LP      G  +N     R ++   +  G+    + HT RH+FAT +L+ G DL +
Sbjct: 349 FD--LP-----SGNEIN-----RLLKPWAKAAGINKRFSFHTSRHTFATMMLTLGADLYT 396

Query: 283 IQSILGHFRLSTTQIYTNVNSK 304
              +LGH  +  TQ+Y  + +K
Sbjct: 397 TSKLLGHADVKMTQVYAKIINK 418


>gi|269977407|ref|ZP_06184379.1| tyrosine recombinase XerC [Mobiluncus mulieris 28-1]
 gi|269934323|gb|EEZ90885.1| tyrosine recombinase XerC [Mobiluncus mulieris 28-1]
          Length = 225

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 89/218 (40%), Gaps = 29/218 (13%)

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           + S  + F  +  +           +  +K+    PR ++E      +D           
Sbjct: 23  AFSSFRQFFAWAYRTGRLETDPAAGLPAIKRFVPPPRPISELDFEAALDQA--------- 73

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVRK 208
             D R   IL L    GLR SE   +  ++I  D    +L + GKG K R+VP+  S+  
Sbjct: 74  --DERTRLILLLAGKMGLRRSEICLVHARDIQQDLLGYSLVVHGKGGKTRVVPIPDSL-- 129

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
                  + P      I   +F  +  +   L  G   +  +++     LP     H LR
Sbjct: 130 -------VFPLRRAGEIGGWVFPSLTAREGHLTSGTVAKLAKRV-----LPTGVCLHQLR 177

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           H FAT +     DLR++Q +LGH ++STTQ Y  ++ +
Sbjct: 178 HRFATIVYLRTKDLRAVQMLLGHDKVSTTQRYVAMDDQ 215


>gi|255692292|ref|ZP_05415967.1| putative integrase/recombinase y4rA [Bacteroides finegoldii DSM
           17565]
 gi|260622025|gb|EEX44896.1| putative integrase/recombinase y4rA [Bacteroides finegoldii DSM
           17565]
          Length = 413

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 133/311 (42%), Gaps = 26/311 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  LE E+ LS  T+  YE     FL  L+     +I+      +   ++  FIS  + 
Sbjct: 116 YLHLLE-EQRLSPKTIDGYEHVFSYFLRHLSLRNVSRIS-----DIGEDDVLTFISSSQN 169

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNLKKSNSLPRALNEKQALTLV 138
            K      +R L+ +++F +YL ++K+  ++   ++          LP     ++ L + 
Sbjct: 170 SK------QRVLATMRAFCRYLYEQKLINKNIDYVIGRNRYIVKEKLPSTYTCEEVLQIE 223

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKI 197
            +V     +++  +  R+ A+L L    GLR S+   L   N+  D++ +R IQ K  + 
Sbjct: 224 SSV-----NQSTPVGKRDYAMLLLATRLGLRSSDIAGLQFSNLDWDRNIIRLIQYKTKRE 278

Query: 198 RIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL---RRY 253
             +PLL  V +AI+ Y     P   +  I L         P+N  V    +R++    R 
Sbjct: 279 IELPLLKDVGEAIINYVKYGRPSSSSKQIFLSSLAPY--NPVNGAVVSLSVRKIICHSRI 336

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                    H +RH+ A+ LL NG  L  I   LGH    TT  Y  ++       ++E+
Sbjct: 337 DTRDRKKGPHAMRHTLASQLLRNGISLPVISETLGHKTTQTTMGYLRIDIDGLMKCVLEV 396

Query: 314 YDQTHPSITQK 324
            D      TQK
Sbjct: 397 PDVPSDFYTQK 407


>gi|295090449|emb|CBK76556.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 413

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 100/214 (46%), Gaps = 45/214 (21%)

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           E+  L  V N      H  K+ D      +Y+L+  GLRISE + LT +N+  + S + +
Sbjct: 197 ERDFLEFVKN----DKHFCKYYDG-----IYILFKTGLRISEFVGLTKKNLDFENSRIIV 247

Query: 191 QGKGDKIR----------------IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI- 233
             +  + R                +VP+ P V++A   +  +     N  ++ P+  G  
Sbjct: 248 DHQLQRTRDMKYIIEDTKTESGERMVPMTPEVKEA---FQRILANRKNPKVE-PMVDGYS 303

Query: 234 -------RGKPLNPGVFQRYIRQLR-RY-----LGLPLSTTAHTLRHSFATHLLSNGGDL 280
                   G+P+    +++Y + +R +Y     + +P   T H  RH+F +++  +G + 
Sbjct: 304 GFLFLDKNGRPMVALHWEKYFQHIREKYNKIYRVQMP-KVTPHVCRHTFCSNMAKSGMNP 362

Query: 281 RSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           +++Q I+GH  +S T  +YT++N  +  + M ++
Sbjct: 363 KTLQYIMGHSDISVTLNVYTHLNYDDAEEEMQKV 396


>gi|126667022|ref|ZP_01737997.1| putative integrase [Marinobacter sp. ELB17]
 gi|126628428|gb|EAZ99050.1| putative integrase [Marinobacter sp. ELB17]
          Length = 286

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 108/254 (42%), Gaps = 26/254 (10%)

Query: 63  IRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           +  +  T + AF+      + I  R+    L+ I+SF +++   +    + I      ++
Sbjct: 10  LEDIDATLVSAFLEDLEVNRSISARTRNLRLTAIRSFFRFVSYEEPAHSAQI------QR 63

Query: 122 SNSLPRALNEKQALTLVD----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             ++P    +++ +  +       LL    ++ WI  R+  +L L    GLR+SE   L 
Sbjct: 64  VLAVPDKRQDRRIVHFLARPEIEALLAAPDQSTWIGRRDHTLLLLAVQTGLRLSELTGLD 123

Query: 178 PQN-IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
             + ++   + +   GKG K R  PL  +V +AI E     P   +      LF   +G+
Sbjct: 124 RASVVLGSDAHVHCLGKGRKERCTPLTRTVSRAIQEGLKE-PARCDSKA---LFSTRQGR 179

Query: 237 PLNPGVFQ----RYIRQLRRYLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSILG 288
            L+    Q    +Y    R++   P       T H LRHS A  LL  G D   I   LG
Sbjct: 180 RLSADAVQYLVAKYADITRQH--CPSLKQKRITPHVLRHSAAMELLQAGVDCSVIALWLG 237

Query: 289 HFRLSTTQIYTNVN 302
           H  + TTQ+Y + +
Sbjct: 238 HESVETTQVYLHAH 251


>gi|170076521|ref|YP_001733160.1| integrase/recombinase [Synechococcus sp. PCC 7002]
 gi|170079512|ref|YP_001736147.1| integrase/recombinase [Synechococcus sp. PCC 7002]
 gi|169887181|gb|ACB00892.1| integrase/recombinase [Synechococcus sp. PCC 7002]
 gi|169887383|gb|ACB01091.1| integrase/recombinase [Synechococcus sp. PCC 7002]
          Length = 289

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 17/158 (10%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           RN  I+  LY  G+R+SE +++   + +   D+   L++ GKGDK+R + ++P+     L
Sbjct: 136 RNELIIKTLYLLGVRVSELINIRWDDFIQTDDNGLKLKVMGKGDKVRFI-VVPTGLWDEL 194

Query: 212 EYYDLCPFDLNLNIQLPLF---RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           E           N    +F   +G  G  L+     R ++     +G+ +S   H LRHS
Sbjct: 195 EALR--------NDSAYVFSSRKGNNGSKLSRIQVYRVVKANGDRVGVQVS--PHFLRHS 244

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
            ATH L NG DL  +   LGH  ++ T  Y + +  +G
Sbjct: 245 HATHSLKNGCDLHLLSESLGHGNIAITSRYLHASGDDG 282


>gi|170684056|ref|YP_001744555.1| type 1 fimbriae regulatory protein [Escherichia coli SMS-3-5]
 gi|218700830|ref|YP_002408459.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli IAI39]
 gi|170521774|gb|ACB19952.1| type 1 fimbriae regulatory protein, FimB family [Escherichia coli
           SMS-3-5]
 gi|218370816|emb|CAR18629.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli IAI39]
          Length = 209

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 73/174 (41%), Gaps = 21/174 (12%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT------------PQNIMDDQSTLR 189
           LL  S   K   +R+  ++ L Y  GLR+SE LSL              Q I +  ST+ 
Sbjct: 14  LLLQSVRQKSCSSRDVCMILLAYFHGLRVSELLSLQLSDLELTTEKIYIQRIKNGFSTVH 73

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
              K + I I   L       +++++  P+         LF    GKPL+   F   +  
Sbjct: 74  PLQKEEVIAITNWLNERNSLNVKHFNDNPW---------LFVSRTGKPLSRQRFYNIVSA 124

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             +  GL +    H LRH+    L  NG D R IQ  LGH  +  T IYT  NS
Sbjct: 125 AGKNAGLNIKVHPHMLRHACGYSLADNGVDTRLIQDYLGHRNIRHTVIYTASNS 178


>gi|293418008|ref|ZP_06660630.1| hypothetical protein ECDG_02928 [Escherichia coli B185]
 gi|291430726|gb|EFF03724.1| hypothetical protein ECDG_02928 [Escherichia coli B185]
          Length = 334

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 24/159 (15%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           D R  A+L L  G   R SEA  L  + I+ ++ T  ++ K  + R VP+   +  A+  
Sbjct: 181 DQRRVALLCLCTGA--RWSEASRLHGEQIVHNRITF-LETKNGRKRTVPVSQEICDAVKT 237

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-GLPLSTTAHTLRHSFAT 271
                 FD+                     ++ + R L++    LP    AH LRH+FA+
Sbjct: 238 KETGRLFDVK--------------------YREFCRALKKIKPDLPRGQAAHVLRHTFAS 277

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           H + NGG++ ++Q ILGH  +  T  Y +       D M
Sbjct: 278 HFVMNGGNILALQKILGHATIQQTMAYAHFAPDYLADAM 316


>gi|56476508|ref|YP_158097.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|56312551|emb|CAI07196.1| phage-related integrase [Aromatoleum aromaticum EbN1]
          Length = 347

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 73/175 (41%), Gaps = 21/175 (12%)

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIR 198
             +L     + W   R+  +  LLY  G R+SE + +   ++ +   S++R+QGKG K R
Sbjct: 148 QAVLAAPDTSTWCGRRDRVMFALLYNTGARVSEMIGIRVADVTLGATSSVRLQGKGRKQR 207

Query: 199 IVPLLPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQR-------YI 247
            VPL       I   L+Y DL           PL     G+ +    V +R         
Sbjct: 208 TVPLWKETAAEIRHWLKYADL-------RTDQPLVPNRSGRAMTRTNVAERLALAITAAT 260

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            Q  R  G  +S   H+ RH+ A HLL  G D+  I   LGH    TT  Y   +
Sbjct: 261 TQCPRLAGRRISP--HSWRHTTAMHLLQAGVDITVIALWLGHESPVTTHGYVEAD 313


>gi|295397961|ref|ZP_06808017.1| possible integrase [Aerococcus viridans ATCC 11563]
 gi|294973719|gb|EFG49490.1| possible integrase [Aerococcus viridans ATCC 11563]
          Length = 356

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 110/237 (46%), Gaps = 35/237 (14%)

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-------RALNEKQALTL 137
           DR++K   + +  F K+L++  +    NI+   N    N++P        AL+ +    L
Sbjct: 94  DRTIKSYRNMLNQFFKWLERENLY--ENIVARAN----NNIPVPHGHAKDALDIEDVEKL 147

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-----STLRIQG 192
           +D   L ++ +T  I  RN A++ L    GLR    + L+  N  D Q     + + +QG
Sbjct: 148 LD--YLKSTTDT-LIGKRNYALILLAVTTGLR---TIELSRANFEDVQRRGLNTVIYVQG 201

Query: 193 KG--DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ---LPLF--RGIRGKP--LNPGVF 243
           KG  +K   V ++P   K ++  Y     D  + I     PLF   G R K   ++    
Sbjct: 202 KGRREKDEFV-IIPRKTKEVVRDYTRFREDQGIMINTDLAPLFASHGNRNKSGRMSARSI 260

Query: 244 QRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            R I      +G+  S  T H+LRH+ AT  L NGG+LR  Q +L H  + TT+IY 
Sbjct: 261 SRVIANAYEAVGIHSSKITPHSLRHTAATLSLINGGNLRETQKLLRHSSVRTTEIYA 317


>gi|223369810|gb|ACM88774.1| integrase [uncultured bacterium]
          Length = 161

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/41 (58%), Positives = 30/41 (73%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+
Sbjct: 121 VACHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTH 161


>gi|312913689|dbj|BAJ37663.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
          Length = 336

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 104/250 (41%), Gaps = 36/250 (14%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDR----SLKRSLSGIKSFLKYL-KKRKITTE 110
           EKI  +      Y   R F+ K R  ++ D     ++ R    + S  + L    +   E
Sbjct: 93  EKINREMGEPRVYELTRNFLMKYRASRLHDGVSAGTVNRDFCTMSSMFRLLIDMEEFHHE 152

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
           +    +R L+  N+    L+E++    + ++L+  + + +        ++ L    G R 
Sbjct: 153 NPFHKVRKLRLENTEMSFLSEEE----IRDLLMALTGDDR-------RVVVLCLNTGARW 201

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
            EA +L  ++++ ++ T  ++ K    R VP+   +   IL       FD N      + 
Sbjct: 202 GEASNLKAEHVISNRVTF-VKTKTGPARTVPISQEIADYILTRKSGKLFDTNYERVRDVL 260

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
           R +  KP                  LP     H LRH+FATH + NGG++ ++Q ILGH 
Sbjct: 261 RKV--KP-----------------DLPRGQALHVLRHTFATHFMINGGNIITLQRILGHT 301

Query: 291 RLSTTQIYTN 300
            +  T  Y +
Sbjct: 302 TIEQTMTYAH 311


>gi|25011273|ref|NP_735668.1| hypothetical protein gbs1224 [Streptococcus agalactiae NEM316]
 gi|76799532|ref|ZP_00781664.1| integrase [Streptococcus agalactiae 18RS21]
 gi|23095697|emb|CAD46883.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76585116|gb|EAO61742.1| integrase [Streptococcus agalactiae 18RS21]
          Length = 358

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 34/166 (20%)

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ------STLRIQG--KG-- 194
           TS+E K+   ++   +YL+   GLR SEA+ LT  +I  D+       T ++ G  KG  
Sbjct: 180 TSNEVKY---KSHFCIYLIATTGLRFSEAMGLTWSDIDRDELLLHVNKTYKVFGSDKGFQ 236

Query: 195 -----DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
                  IR VP+  +  K + +Y       L    +  +F GI    +N        + 
Sbjct: 237 PTKNKHSIRYVPINNTTIKLLDQY------RLLFKTETRIFEGISNTAVN--------KT 282

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           L++ +G  +    H+LRH++ +HL+S G DL +I  I+GH  L+ T
Sbjct: 283 LKKLVGRNIHI--HSLRHTYVSHLISEGIDLFAISKIVGHKDLNIT 326


>gi|197250677|ref|YP_002147601.1| integrase [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|205360077|ref|ZP_02834436.2| integrase [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|197214380|gb|ACH51777.1| integrase [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|205341129|gb|EDZ27893.1| integrase [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
          Length = 336

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 104/250 (41%), Gaps = 36/250 (14%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDR----SLKRSLSGIKSFLKYL-KKRKITTE 110
           EKI  +      Y   R F+ K R  ++ D     ++ R    + S  + L    +   E
Sbjct: 93  EKINREMGEPRVYELTRNFLMKYRASRLHDGVSAGTVNRDFCTMSSMFRLLIDMEEFHHE 152

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
           +    +R L+  N+    L+E++    + ++L+  + + +        ++ L    G R 
Sbjct: 153 NPFHKVRKLRLENTEMSFLSEEE----IRDLLMALTGDDR-------RVVVLCLNTGARW 201

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
            EA +L  ++++ ++ T  ++ K    R VP+   +   IL       FD N      + 
Sbjct: 202 GEASNLKAEHVISNRVTF-VKTKTGPARTVPISQEIADYILTRKSGKLFDTNYERVRDVL 260

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
           R +  KP                  LP     H LRH+FATH + NGG++ ++Q ILGH 
Sbjct: 261 RKV--KP-----------------DLPRGQALHVLRHTFATHFMINGGNIITLQRILGHT 301

Query: 291 RLSTTQIYTN 300
            +  T  Y +
Sbjct: 302 TIEQTMTYAH 311


>gi|315644272|ref|ZP_07897442.1| integrase family protein [Paenibacillus vortex V453]
 gi|315280647|gb|EFU43936.1| integrase family protein [Paenibacillus vortex V453]
          Length = 303

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 7/167 (4%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           L+    ++ ++  R+  ++      G+R SEAL+L P +       +RI     K R+  
Sbjct: 126 LIRVPDQSTFVGMRDYTLIIFTLDTGIRPSEALALQPNDFNLISGWVRIPDGAAKTRVSR 185

Query: 202 LL---PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            L   P    A+    D+ P   +   ++P+F    G  LN   +   + +  + +G+ +
Sbjct: 186 TLNISPVTVDALKRLIDMRP--RSWANKVPVFSTETGNVLNRHTWGDRLERHSKQVGVHI 243

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             T + LRH+FA   L NG    S+Q  LGH  +S T+ Y  +  ++
Sbjct: 244 --TPYALRHAFALEFLRNGASAFSLQKTLGHVDISMTKRYVALADED 288


>gi|238916936|ref|YP_002930453.1| integrase/recombinase XerC [Eubacterium eligens ATCC 27750]
 gi|238872296|gb|ACR72006.1| integrase/recombinase XerC [Eubacterium eligens ATCC 27750]
          Length = 354

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 100/225 (44%), Gaps = 17/225 (7%)

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV-- 141
            + + KR L  ++ F +Y  + +I + +  + +   K        +   +    +DNV  
Sbjct: 112 SESAAKRKLCALRRFYEYYCRYEIISLNPTIKVDMPKIHEKAIIRMEPNEVAEFLDNVES 171

Query: 142 ---LLHT---SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
              L  T   SHE   +  R+ A+L L+ G G+R+SE + L   ++  D   +R+  KG 
Sbjct: 172 GNKLTKTQLQSHEK--LKTRDLALLTLMLGTGIRVSECVGLDINDVDFDNDRIRVIRKGG 229

Query: 196 KIRIVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
               V     VR+A+L Y +    L P + + N    LF   + K L     +  +++  
Sbjct: 230 SESFVYFGDEVREALLNYLEERKNLTPDEGHEN---ALFISAKKKRLCVRSVELLVKKYA 286

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           + +      T H LR ++ T+L     D+  +  +LGH  ++TT+
Sbjct: 287 QTVTTVKHITPHKLRSTYGTNLYQESQDIYLVADVLGHKDVNTTR 331


>gi|228918167|ref|ZP_04081671.1| Integrase-recombinase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228841447|gb|EEM86586.1| Integrase-recombinase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 390

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 10/153 (6%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           N  I+  L   G RI E  +   +++  D +  L+++GKGDK R + +   + + I E  
Sbjct: 218 NYTIILALASTGARIQELCTARVKDLHYDGKYWLKVRGKGDKFRELFVSEHLYQCICEVR 277

Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266
               F   L    + PLF   RG   N       +  + +   L          TAHT R
Sbjct: 278 RRRGFQTVLEKGDESPLFINQRGSAYNSKTLSNQVTDMIKKTNLEFLQYRENPVTAHTFR 337

Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
           H+FA   +  G  DL  +   LGH  + TT+IY
Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370


>gi|223369796|gb|ACM88767.1| integrase [uncultured bacterium]
          Length = 163

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 31/42 (73%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSFATHLL    D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAERDIRTVQELLGHTDVKTTQIYTHV 162


>gi|138895711|ref|YP_001126164.1| putative integrase/recombinase XerD [Geobacillus
           thermodenitrificans NG80-2]
 gi|134267224|gb|ABO67419.1| Putative integrase/recombinase XerD [Geobacillus
           thermodenitrificans NG80-2]
          Length = 304

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 131/291 (45%), Gaps = 35/291 (12%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           E+G S  T+ SY  D   F   L     + +T   IR+     I+  ++    + +   +
Sbjct: 11  EKGASPNTIISYTNDLNIFFNDLHIRPSDYVTSADIRKW----IQQMLNPIEGKPLAIST 66

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV---LLH 144
           + R L+ ++SF  +  +     ++ + ++++LK ++      + ++ + L +     LLH
Sbjct: 67  INRRLNSLRSFYAWAVEHHKIEQNPMKDIQDLKSADE-----DYEKIMWLTEEEFEDLLH 121

Query: 145 TSHE----TKWIDA-----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
              +    ++ +D      R+ A++YLL   GLR+ E  +L   ++  +   +RI GKG 
Sbjct: 122 RMRKKPVRSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMKRIRIVGKGM 181

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL------NPGVFQRYIRQ 249
           K+R VP + ++  A LE  D   F   +  + P    +   P       +P    R I++
Sbjct: 182 KVRTVP-ISNILLAELE--DWLEFRAEMAKKKP---HVAASPYVFYSQRSPKFSVRGIQR 235

Query: 250 LRRYLGLP-LSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLSTTQIY 298
           +     LP    T H  RH+F   +L +   D+  ++ + GH  ++TT  Y
Sbjct: 236 MIESYSLPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRY 286


>gi|255527483|ref|ZP_05394353.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296187567|ref|ZP_06855962.1| phage integrase [Clostridium carboxidivorans P7]
 gi|308390327|ref|YP_003933780.1| phage integrase family protein [Clostridium carboxidivorans P7]
 gi|255508826|gb|EET85196.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296048089|gb|EFG87528.1| phage integrase [Clostridium carboxidivorans P7]
 gi|308066834|gb|ADO12138.1| phage integrase family protein [Clostridium carboxidivorans P7]
          Length = 278

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 133/301 (44%), Gaps = 50/301 (16%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDT-RQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L E + +L    ++ G +K T++SY       F  F   + E+ + +     L Y   +
Sbjct: 1   MLDEFEKYL----LQEGKAKNTIKSYMLHVGNYFKWFRDSFGEDPLKLYRQNVLEY---K 53

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALN 130
           +++ K   +K    ++   L+ +  F  +L  + I +ES +    N+K   S + P  + 
Sbjct: 54  SYLEK--IKKENGNTINAKLAALTKFNDFLIYKNIQSESVLSKKDNIKIQMSYASPATIT 111

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ--NIMDDQSTL 188
           ++        +L +  +       R+ A++ +L   GLRISE L+L     N++  +  +
Sbjct: 112 KQDVEVFRQRILQNECN-------RSYAVVTVLSYAGLRISECLNLKIDDVNLVSKELIV 164

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGV- 242
           R +GKG K RIV +   +  AI EY        C +         +F   +G  L+  V 
Sbjct: 165 R-EGKGSKQRIVYINTKIVDAIKEYLKERKKVACEY---------MFVSNKGNRLDRTVV 214

Query: 243 ---FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
              F +Y  ++          T HTLRH + ++ L +G  +  + +  GH  + TT +YT
Sbjct: 215 NKLFNKYSDKI----------TPHTLRHFYCSNALESGFSVHEVANQAGHSNIHTTLLYT 264

Query: 300 N 300
           N
Sbjct: 265 N 265


>gi|17981816|ref|NP_536807.1| integrase [Haemophilus phage HP2]
 gi|145639521|ref|ZP_01795125.1| putative integrase [Haemophilus influenzae PittII]
 gi|13752189|gb|AAK37784.1| integrase [Haemophilus phage HP2]
 gi|145271312|gb|EDK11225.1| putative integrase [Haemophilus influenzae PittII]
 gi|309750497|gb|ADO80481.1| integrase [Haemophilus influenzae R2866]
          Length = 337

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 61/142 (42%), Gaps = 21/142 (14%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I+ +    G R SEA +LT   +M  + T  +  K  K R VP+         E +D+ P
Sbjct: 197 IVRICLATGARWSEAETLTQSQVMPYKITF-VNTKSKKNRTVPISK-------ELFDMLP 248

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
                          RG+  N          LR  + LP     H LRH+FA+H + NGG
Sbjct: 249 -------------KKRGRLFNDAYESFENAVLRAEIELPKGQLTHVLRHTFASHFMMNGG 295

Query: 279 DLRSIQSILGHFRLSTTQIYTN 300
           ++  ++ ILGH  +  T  Y +
Sbjct: 296 NILVLKEILGHSTIEMTMRYAH 317


>gi|261345904|ref|ZP_05973548.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
 gi|282565988|gb|EFB71523.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
          Length = 329

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 61/142 (42%), Gaps = 20/142 (14%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I  L    G R  EA  L  +N++  + T  ++ K  + R VP+   V KA+     +  
Sbjct: 184 ITVLCLSTGARWGEATQLRAENLLHGRVTF-MKTKNGRHRTVPISDEVMKAV----KIKE 238

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
             L  N     +R I  K + P               LP     H LRH+FA H + NGG
Sbjct: 239 SGLLFNADYETYRAIL-KNVKPD--------------LPHGQAVHALRHTFAAHFMMNGG 283

Query: 279 DLRSIQSILGHFRLSTTQIYTN 300
           ++ ++Q I+GH  +  T  Y +
Sbjct: 284 NILTLQKIMGHATIQQTMTYAH 305


>gi|326382424|ref|ZP_08204116.1| phage integrase family protein [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199154|gb|EGD56336.1| phage integrase family protein [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 377

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 92/203 (45%), Gaps = 34/203 (16%)

Query: 121 KSNSLPRALNEKQAL-TLVDNVL--LHTSHETKWIDA-RNSAILYLLYGCGLRISEALSL 176
           +++  P   +E QAL    D+ +  + T+    W  A R++A++ + Y  GLR +E   L
Sbjct: 151 RASKRPYTKDELQALFEYADDEVARIGTTSRKGWQAAYRDAAMMKVAYAYGLRFNE---L 207

Query: 177 TPQNIMD--DQSTLRIQGK--------GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI- 225
           T   ++D       R  GK        G   R  P  P   +++L  +   P  +   I 
Sbjct: 208 THLQLVDFARNPHAREFGKFGVCKVRYGKAFRGSPPKP---RSVLTVWRWTPPIIEDWIA 264

Query: 226 -------QLPLFRGIRGKPLNPGVFQRYIRQLRRY---LGLPLSTTAHTLRHSFATHLLS 275
                   L LF   RG  +   V    +R++RRY   LG+P     H+ R S+ATHLL 
Sbjct: 265 NGRGDPDSLDLFSSERGGLV---VGSTLLRRVRRYCVDLGIPDGVDLHSFRRSYATHLLE 321

Query: 276 NGGDLRSIQSILGHFRLSTTQIY 298
           +G D R +Q  +GH   STT IY
Sbjct: 322 DGWDPRFVQDQMGHEHASTTGIY 344


>gi|320195795|gb|EFW70420.1| Putative integrase/recombinase [Escherichia coli WV_060327]
          Length = 309

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 83/174 (47%), Gaps = 7/174 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           RAL+ ++   L+     H  H  ++   R+ AI   L G GLR  E + L  ++  +   
Sbjct: 123 RALDRQEIRALIHAAKQHPQHVRRY---RDVAIALTLCGTGLRAGELVKLERRDYDNGVL 179

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG--IRGKPLNPGVFQ 244
           T+R QGKG K R + +  +V KAI  +  +   + +  +   + R   +  +PL      
Sbjct: 180 TVR-QGKGRKYREIHVADAVDKAIRAWLKVGADEADSALFSRIQRNGKVASQPLTTTGLT 238

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             +  L++  G+    T H +R +F T LL  G D+ +++ + GH  +STT  Y
Sbjct: 239 GILADLQQTSGIA-RFTPHDMRRTFITRLLEQGVDINTVRQLAGHSDISTTTRY 291


>gi|291515320|emb|CBK64530.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 407

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 96/226 (42%), Gaps = 18/226 (7%)

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSL--PRALNEKQALTLVDNVLLHTSHETKWIDAR 155
           F + +K + ++ E N  N   + K N+    RAL++   + ++D        + K I+  
Sbjct: 186 FNRAIKAKIVSREKNPFNEYKISKFNTRTPKRALSKADMMKIIDA----DCSQGKEIEQF 241

Query: 156 NSAILYLLYGCG-LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
              I    Y CG +   +  +LTP NI D +     Q     I  VPL    +  I +Y 
Sbjct: 242 AHDIFVFSYLCGGISFVDIANLTPANIADGRLIYHRQKTHGAIN-VPLSEKAKAIIGKYD 300

Query: 215 DLCP--------FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
             C          D  ++I  PL +  R   +   V    +R + + L +  + T +  R
Sbjct: 301 SHCEQAGYLFPILDERVHI-TPLQKKNRVHKMCSRV-NVALRNIAKRLKIKATVTTYVAR 358

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           HSFAT L  +G ++  I   LGH  L TTQIY +    +  D  M+
Sbjct: 359 HSFATVLKKSGVNIGIISEALGHHSLKTTQIYLDSFENSQIDAAMQ 404


>gi|34335022|gb|AAQ64997.1| unknown [synthetic construct]
 gi|301159296|emb|CBW18811.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|323131081|gb|ADX18511.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 341

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 34/156 (21%)

Query: 153 DARNSAILYLLYGC---GLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSV 206
           D+++ ++L +   C   G R SEA +L    +    S  RI   + KG K R VP+    
Sbjct: 190 DSQSPSLLMITKICLSTGARWSEAENLQGHQV----SKYRITYTKTKGKKNRTVPI---- 241

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG--VFQRYIRQLRRYLGLPLSTTAHT 264
                + YD  P +             RGK   P    F+R I+  R  + LP     H 
Sbjct: 242 ---SQDLYDEIPRN-------------RGKLFTPCRKAFERAIK--RAGIELPEGQCTHV 283

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           LRH+FA+H + NGG++  ++ ILGH  +  T IY +
Sbjct: 284 LRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAH 319


>gi|204929529|ref|ZP_03220603.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|204321248|gb|EDZ06448.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 341

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 34/156 (21%)

Query: 153 DARNSAILYLLYGC---GLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSV 206
           D+++ ++L +   C   G R SEA +L    +    S  RI   + KG K R VP+    
Sbjct: 190 DSQSPSLLMITKICLSTGARWSEAENLQGHQV----SKYRITYTKTKGKKNRTVPI---- 241

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG--VFQRYIRQLRRYLGLPLSTTAHT 264
                + YD  P +             RGK   P    F+R I+  R  + LP     H 
Sbjct: 242 ---SQDLYDEIPRN-------------RGKLFTPCRKAFERAIK--RAGIELPEGQCTHV 283

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           LRH+FA+H + NGG++  ++ ILGH  +  T IY +
Sbjct: 284 LRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAH 319


>gi|154492484|ref|ZP_02032110.1| hypothetical protein PARMER_02118 [Parabacteroides merdae ATCC
           43184]
 gi|254881869|ref|ZP_05254579.1| phage integrase [Bacteroides sp. 4_3_47FAA]
 gi|154087709|gb|EDN86754.1| hypothetical protein PARMER_02118 [Parabacteroides merdae ATCC
           43184]
 gi|254834662|gb|EET14971.1| phage integrase [Bacteroides sp. 4_3_47FAA]
          Length = 330

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 116/259 (44%), Gaps = 32/259 (12%)

Query: 62  TIRQL---------SYT--EIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRK 106
           TIRQL          YT  +IRA+++    K ++ ++   +++R  S   SF  +L++  
Sbjct: 79  TIRQLFKKMPKKVTDYTTEDIRAYLAVFQRKNKSSRVTIDNIRRIFS---SFFAWLEEED 135

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
              +S +  +  +K    +   L+++    L D+            + R+ AI+ +L   
Sbjct: 136 YIIKSPVRRIHKVKTGTQVKEVLSDENIEQLRDS----------CTEIRDLAIIDILAST 185

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G+R+ E + L  ++I  ++    + GKG+K RIV    +  K  L+ Y     D N  + 
Sbjct: 186 GMRVGELVKLNREDINFNERECIVFGKGNKERIV-YFNARAKIHLQQYLASRKDRNKALF 244

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           + L +    K L     +  +R+L R   + +    H  R + AT  +  G  +  +Q +
Sbjct: 245 VSLAKP--HKRLGISGVETRLRKLGRSAKI-VRVHPHKFRRTLATMAIDKGMPVEQVQRL 301

Query: 287 LGHFRLSTTQIYTNVNSKN 305
           LGH ++ TT  Y  VN  N
Sbjct: 302 LGHVKIDTTMHYAMVNQSN 320


>gi|323946286|gb|EGB42318.1| phage integrase [Escherichia coli H120]
          Length = 335

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 24/151 (15%)

Query: 153 DARNSAILYLLYGC---GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           D+++ ++L +   C   G R SEA +L    +   + T   + KG K R VP+       
Sbjct: 179 DSQSPSLLMIAKICLATGARWSEAENLQSHQVSKYRITY-TKTKGKKNRTVPI------- 230

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
                       +L  +LP  RG    P     F+R ++  R  + LP     H LRH+F
Sbjct: 231 ----------SKDLYEELPKNRGKLFTPCRK-AFERAVK--RAGIELPEGQCTHVLRHTF 277

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           A+H + NGG++  ++ ILGH  +  T IY +
Sbjct: 278 ASHFMMNGGNILVLRDILGHVDIKMTMIYAH 308


>gi|89147482|gb|ABD62601.1| integrase [uncultured bacterium]
          Length = 163

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 38/69 (55%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           IR   +     QR ++       +    T HTLRHSFATHLL  G ++R +Q +LGH   
Sbjct: 94  IRRHHITSATIQRAMKNAVTSAEIVKHATVHTLRHSFATHLLMAGTNIREVQELLGHKSA 153

Query: 293 STTQIYTNV 301
            TT IYT+V
Sbjct: 154 ETTMIYTHV 162


>gi|317505162|ref|ZP_07963099.1| integrase [Prevotella salivae DSM 15606]
 gi|315663722|gb|EFV03452.1| integrase [Prevotella salivae DSM 15606]
          Length = 406

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 136/298 (45%), Gaps = 51/298 (17%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + + I+R L    L++Y+      L  L  Y ++K  +  I  LS  + +AFI       
Sbjct: 123 ERIGIDRALKTFKLRTYQ------LSLLREYVQKKHKVSDI-PLSQLD-KAFIDGFEYYL 174

Query: 83  IGDRSLKRS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             DR LK S     LS +++ ++   K+ +      L   + ++    PR++ +++   +
Sbjct: 175 TIDRRLKHSSISSALSTLQTIVRMALKKGVLDFYPFLGY-SYERPKGEPRSITKEELERI 233

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +D        E +W + R    L++ + C  GL IS+  +L  +NI+ ++  L I+G+  
Sbjct: 234 ID-------LEIEWTNYRVVRDLFV-FSCFSGLAISDVRNLREENIVLEEGELCIKGRRM 285

Query: 196 KIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-----PLNPGVFQRYI 247
           K +    V +LP    AI+E Y                RG R       P N  +    +
Sbjct: 286 KTKTPYRVQVLPPAW-AIMERY----------------RGKRAGFVFDVPTNDIILNG-M 327

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQIY  V+S+
Sbjct: 328 HFIQRNIGMETPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAAVSSE 385


>gi|168184229|ref|ZP_02618893.1| CAAX amino terminal protease family protein [Clostridium botulinum
           Bf]
 gi|182672699|gb|EDT84660.1| CAAX amino terminal protease family protein [Clostridium botulinum
           Bf]
          Length = 355

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 84/195 (43%), Gaps = 45/195 (23%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG--CGLRISEALSLTPQNIMDD 184
           RALNE +   L+++               N   L +L G  CGLR+ E L LT  +I + 
Sbjct: 172 RALNENEENKLLEDF------------KSNKYYLVILLGLKCGLRLGEILGLTWSDIDEV 219

Query: 185 QSTLRIQGKGDKI----------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
             T+ I  +  ++                R +P+  S    + +Y  +      +NI   
Sbjct: 220 NKTISINKQWKQVNPTKYNFGELKSKNSNRTIPISQSTLDELKKYKKI------VNIDNR 273

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           LF+    K  N          L R L L   + T H LRH++AT L+SNG D +++  +L
Sbjct: 274 LFKF---KNTNSSCIC-----LNRLLKLKGYNITVHELRHTYATKLISNGVDFKTVAQLL 325

Query: 288 GHFRLSTTQIYTNVN 302
           GH    T + Y++VN
Sbjct: 326 GHTVEQTMKTYSHVN 340


>gi|167628726|ref|YP_001679225.1| phage integrase [Heliobacterium modesticaldum Ice1]
 gi|167630973|ref|YP_001681472.1| phage integrase [Heliobacterium modesticaldum Ice1]
 gi|167591466|gb|ABZ83214.1| phage integrase [Heliobacterium modesticaldum Ice1]
 gi|167593713|gb|ABZ85461.1| phage integrase [Heliobacterium modesticaldum Ice1]
          Length = 328

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 116/289 (40%), Gaps = 41/289 (14%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSF 98
           Y  +  Q   F  F  E+KIT  T+ +   TE   +I KR  +    + L+   S I+ F
Sbjct: 30  YGAEEHQLRRFDVFCVEQKITEPTLTK-ELTE--QWIEKRAGEAAKSQHLR--CSAIRQF 84

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE------TKWI 152
             +L    +   + +L +R    S S    +   + L      + H + +      + +I
Sbjct: 85  ALFLSSCGLA--AYVLPVRKNTVSQSYAPYIFSAEEL----KAIFHAADQMTPCTVSPFI 138

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAIL 211
                 IL LLYGCGLR +EA  L   ++  D   L I   K +K R+VP+  S+     
Sbjct: 139 HEVMPMILRLLYGCGLRSAEACHLKKCDVSLDDGVLTILNAKNEKDRLVPMSDSLADRCR 198

Query: 212 EYYD----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-----STTA 262
            Y +    LCP D         F    G  + P     + R+     G+           
Sbjct: 199 AYSERMELLCP-DTAY-----FFPNKYGGCVEPFTIYPWFRRFLFEAGISHHGRGKGPRV 252

Query: 263 HTLRHSFATH----LLSNGGDLR----SIQSILGHFRLSTTQIYTNVNS 303
           H LRH+FA H    +  +G DL     ++   LGH  +S T+ Y  + +
Sbjct: 253 HDLRHTFAVHSLRKMAGDGMDLYCALPALSMYLGHENISATEKYLRMTA 301


>gi|330507934|ref|YP_004384362.1| site-specific integrase/recombinase [Methanosaeta concilii GP-6]
 gi|328928742|gb|AEB68544.1| site-specific integrase/recombinase [Methanosaeta concilii GP-6]
          Length = 279

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 106/235 (45%), Gaps = 25/235 (10%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+     +K+   ++   ++ IK + + L +         +++  LK+S  +P   NE  
Sbjct: 54  FLDGLHNRKLAGSTIDNYITSIKKYHEMLGQE--------ISIPYLKRSEGIPHYFNE-- 103

Query: 134 ALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
                D+V  +    H  K +   N     L YGC LR SE  ++  ++I     TLRI+
Sbjct: 104 -----DDVRRIFCVIHNIKHLAMLNV----LFYGC-LRASELTAIDDEDIDLGLMTLRIR 153

Query: 192 -GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG +   VPL       + EY  + P  ++++ + PLF   RG+  +     R     
Sbjct: 154 DGKGGRSGTVPLSNECIAVLKEYLQVRPA-IDIDGRKPLFYTDRGRRWDRKDLYRMFIIY 212

Query: 251 RRYLGLPLSTTAHTL-RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +    +  +   H   RH+ AT +++NG D+R ++ +L H  + TT  Y +V  K
Sbjct: 213 KHKSNVQKAGGLHVFSRHTPATLMIANGCDIRIVKELLRHRDIRTTLRYAHVADK 267


>gi|302389856|ref|YP_003825677.1| integrase family protein [Thermosediminibacter oceani DSM 16646]
 gi|302200484|gb|ADL08054.1| integrase family protein [Thermosediminibacter oceani DSM 16646]
          Length = 323

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 122/297 (41%), Gaps = 48/297 (16%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS---KRRT----- 80
           + LSK T+ SYE   R F  FL    +EK  I+ + +++   IR ++    KR       
Sbjct: 18  KNLSKRTIGSYEQSLRLFAQFL----KEKYGIEEVSKVNTGHIRQYLDYLGKRGKYTVII 73

Query: 81  -----------------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
                            Q +   +    L  +K F  +L       ++ +  +  +K   
Sbjct: 74  DETKKEINNPENRQDFGQPLSTTTKANYLRNLKVFFNWLYGEGEIPKNPVAKIEQIKPQR 133

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            + + L+E Q L  + N  + ++    +   RN  I   L   G RI E LSLT  +I  
Sbjct: 134 KVKKPLSE-QDLKRIANCFVKST----FTGYRNYVIFKFLLDTGARIQETLSLTHNDIDL 188

Query: 184 DQSTLRIQGKGDK----IRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPL 238
               + ++   +K    + + P +    K  L+Y +     DL       +F   RG PL
Sbjct: 189 KFRVVTLRNTKNKQERKVYLSPKMLQEMKNWLKYKERYVSSDL-------IFPTKRGTPL 241

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
               +++ +R   + +G+ +S   H LR+ FA + + NGG+   +  +LGH  +  T
Sbjct: 242 TVHSYEKQLRDAGKLVGIDIS--PHMLRNQFARYYILNGGNFPMLSKLLGHSDVKVT 296


>gi|269219930|ref|ZP_06163784.1| integrase/recombinase XerC [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269210670|gb|EEZ77010.1| integrase/recombinase XerC [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 160

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 15/151 (9%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVRKA 209
           I  R + IL L    GLR +E  +++  ++++D     L + GKG ++R VP+   +   
Sbjct: 9   IPPREALILRLAAFMGLRCTEIAAVSAPDLIEDLFGPALVVHGKGGRLRTVPVPAHLHGD 68

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           ++  +    F L             GK  N  +  R+I +L     LP   T HTLRH F
Sbjct: 69  LVAGFKRNGFWL-----------FPGKD-NGHLSARWISKLGGRC-LPQGWTMHTLRHRF 115

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           AT       DL ++Q +LGH  + TTQ Y  
Sbjct: 116 ATKAYRTDHDLIAVQRLLGHASIETTQRYVE 146


>gi|327470621|gb|EGF16077.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK330]
          Length = 328

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 115/251 (45%), Gaps = 27/251 (10%)

Query: 62  TIRQLSYTEIRAFISK----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           +IR L+ +++R ++++    R++ K+   +++R  S   SF  +L+      +S +  + 
Sbjct: 88  SIRDLTTSDLRTYLARYQQERKSSKVTIDNMRRIFS---SFFGWLEDEDYILKSPVRRIH 144

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
            +K   ++   L++ + L L+ +              R+ A++ LL   G+R+ E + L 
Sbjct: 145 KIKTDKTIKETLSD-EGLELLRDA---------CDKIRDLAMIDLLTSTGMRVGELVRLN 194

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD---LNLNIQLPLFRGIR 234
            ++I   +    + GKG+  RIV      +  ++ Y D    D   L +++  P  R + 
Sbjct: 195 REDINFYERECVVFGKGNSERIVYFDARTKIHLINYLDSRQDDNPALFVSLSSPHDRLLI 254

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G     GV  R +RQL +   L      H  R + AT  +  G  +  +Q +LGH ++ T
Sbjct: 255 G-----GVETR-LRQLGQKADLN-KVHPHKFRRTLATRAIDKGMPIEQVQHLLGHVKIDT 307

Query: 295 TQIYTNVNSKN 305
           T  Y  VN  N
Sbjct: 308 TMHYAMVNQAN 318


>gi|258592425|emb|CBE68734.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
          Length = 89

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/41 (58%), Positives = 31/41 (75%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T HT RHSFATHLL  G D+R++Q +LGH  + TT +YT+V
Sbjct: 34  TCHTFRHSFATHLLEGGYDIRTVQELLGHSDVKTTMMYTHV 74


>gi|187928591|ref|YP_001899078.1| integrase family protein [Ralstonia pickettii 12J]
 gi|241114169|ref|YP_002973644.1| integrase family protein [Ralstonia pickettii 12D]
 gi|187725481|gb|ACD26646.1| integrase family protein [Ralstonia pickettii 12J]
 gi|240868742|gb|ACS66400.1| integrase family protein [Ralstonia pickettii 12D]
          Length = 704

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 105/265 (39%), Gaps = 49/265 (18%)

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPRALNEKQALTLV 138
           K+   S   +L+ +++  +YL  +   + +    +R     K    + R+L E Q   +V
Sbjct: 426 KLSPESQAYALTVLQNLYRYLNDKNYLSGNPWGGVRATNGGKPQLDVGRSLTEDQWAFVV 485

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM------------DDQS 186
           + + L     +   + R    L LLY  GLR++E +  T  ++              D  
Sbjct: 486 ERLFLLERTSS---NLRLQVALPLLYATGLRLAEIVGATTADLAWRSLALPRSGERMDGW 542

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLF----------RGIRG 235
            L + GKG ++R VP+   V  A+  Y D   F  +   I+ P+           R    
Sbjct: 543 WLTVVGKGSRVREVPVPDEVVHALGAYLDSRGFPSDPAQIREPVALLGHATDQAERAPWA 602

Query: 236 K--------PLNPGVFQRYIRQLRRYLGLPLSTT------------AHTLRHSFATHLLS 275
           K        PL PGV  R I++  +     L  T             H LRHS A+H ++
Sbjct: 603 KRDTASPAAPLTPGVLYRQIKRFFQACATELEATDPQGAARLNEASTHWLRHSHASHAIA 662

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTN 300
            G  +  +Q  LGH  L TT +Y  
Sbjct: 663 AGTPVEIMQQNLGHKSLDTTTVYVT 687


>gi|107100187|ref|ZP_01364105.1| hypothetical protein PaerPA_01001210 [Pseudomonas aeruginosa PACS2]
          Length = 328

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 26/157 (16%)

Query: 152 IDARNSA-----ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
           +DAR ++     +  +    G R  EA +LT   +  + + +    K  ++R VP+   +
Sbjct: 176 LDARTTSPHPKMVARICLATGARWGEAQALTLDRLKGN-TVIFANTKSKRVRSVPISEGL 234

Query: 207 RKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            K I +++    PF   L                 GVF+  I  L   + LP    +H L
Sbjct: 235 AKEIRQHWQTHGPFTNCL-----------------GVFR--IVLLSTSIKLPRGQASHVL 275

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           RH+FA+H + NGG + ++Q ILGH  LS T  Y +++
Sbjct: 276 RHTFASHFIMNGGHIVTLQHILGHASLSMTMRYAHLS 312


>gi|324323830|gb|ADY24874.1| integrase-recombinase protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
 gi|324323973|gb|ADY25016.1| integrase-recombinase protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 280

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 128/276 (46%), Gaps = 31/276 (11%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +E+G  ++T++ Y+   R    F ++   E  ++Q + +    +   F+S    Q     
Sbjct: 16  LEQGKREITVEDYK---RHIQNFHSWLVHENSSLQDLTRYDIQQYIYFLSGCGNQAT--- 69

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++    S I S++ ++ +  +  +     +R+++  +  P++L+  Q      N LL   
Sbjct: 70  TITPKFSAIVSYVHFIDREDLLHDIKRPEVRHIRHIS--PKSLSRNQR-----NQLLRKV 122

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQST-LRIQ-GKGDKIRIVPLL 203
            +++  + RN AI+YL    G+RI E ++L  ++I M ++S  L +Q GKG   R +PL 
Sbjct: 123 EQSE--NLRNIAIIYLTLYTGVRIFELVALNREDIEMRERSGFLTVQDGKGGISRKIPLP 180

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              R  +  Y          + Q  LF    GK L+    QR                AH
Sbjct: 181 VESRYHLQRY-----LQSRTDSQSALFLSNYGKRLSKRSAQRVFENY--------GIHAH 227

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            LRH++   L+++G D+ ++  ++GH  ++TT+ Y 
Sbjct: 228 MLRHTYGRELVASGIDIATVAELMGHNDVNTTKRYA 263


>gi|126665398|ref|ZP_01736380.1| putative integrase [Marinobacter sp. ELB17]
 gi|126630026|gb|EBA00642.1| putative integrase [Marinobacter sp. ELB17]
          Length = 321

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 120/279 (43%), Gaps = 17/279 (6%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           ERGLS  T+      + Q   FL+      I++  I   +  ++ A++S + +      S
Sbjct: 40  ERGLSPATITFR---SEQVTHFLSTICGPDISLAAI---TINDVDAYLSYQGSHGWSRTS 93

Query: 88  LKRSLSGIKSFLKYLKKRKITTE-SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           L      ++SF +Y + +  ++  +  ++   +     LP     +Q   L+ +   + +
Sbjct: 94  LHTLADALRSFFRYSEAQGWSSGIAASVDAPRIYAQEDLPLGPTWEQVQQLITSFSSNNA 153

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205
                +D R+ AI+ LL   GLR  E   L   ++      L I + K    +  PL P 
Sbjct: 154 -----VDIRDRAIVLLLAVYGLRSGEVTRLRLGDVDWVGEILHITRPKQRCTQQYPLDPE 208

Query: 206 VRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAH 263
           V  AIL Y  +  P   +  + + L   IR  PL P      +      LG+ +    AH
Sbjct: 209 VGDAILRYLKEARPRCSSRQLFMALNAPIR--PLMPKCITPIVHSRLDALGIHVPRRGAH 266

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            LRH+ A HLL+    L+ I   LGH   S+T++Y  V+
Sbjct: 267 CLRHACARHLLAASFSLKQIGDQLGHRSASSTRVYAKVD 305


>gi|293373295|ref|ZP_06619653.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292631691|gb|EFF50311.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 383

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 74/160 (46%), Gaps = 37/160 (23%)

Query: 163 LYGC--GLRISEALSLTPQNIM--DDQ--STLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           L+ C  GLRIS+  +L  +NI+  D Q  + L +Q  G +++I PL     + I      
Sbjct: 236 LFACFSGLRISDIRALRWKNIIVEDGQFFAMLFMQKTGKELKI-PLPDKAMEII------ 288

Query: 217 CPFDLNLNIQLPLFRGIRGK--------PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
                           IRG         P NP V +  +++     G+    T HT RH+
Sbjct: 289 ---------------SIRGNDEDKVFFLPSNPTV-EDNLKKWAEAAGINKHLTFHTARHT 332

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +AT LL+ G DL ++  +LGH  ++TTQIY  V  K   D
Sbjct: 333 YATLLLTLGADLYTVSKMLGHTNVATTQIYAKVVDKKKVD 372


>gi|223369785|gb|ACM88762.1| integrase [uncultured bacterium]
          Length = 163

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 31/42 (73%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSFATHLL  G D+ ++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHTSRHSFATHLLQAGRDIHTVQELLGHTDVKTTQIYTHV 162


>gi|134100181|ref|YP_001105842.1| tyrosine recombinase XerC [Saccharopolyspora erythraea NRRL 2338]
 gi|291006600|ref|ZP_06564573.1| tyrosine recombinase XerC [Saccharopolyspora erythraea NRRL 2338]
 gi|133912804|emb|CAM02917.1| tyrosine recombinase XerC [Saccharopolyspora erythraea NRRL 2338]
          Length = 398

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 78/191 (40%), Gaps = 51/191 (26%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDD--------QSTLRIQGKGDKIRIVPLLPSV 206
           R+ A++ +L G G+R  E + +     +DD         ++LR+ GKG K R+V L P V
Sbjct: 182 RDRAMVEILVGTGVRAEELVGVN----LDDYDRPTPGGSASLRVHGKGAKDRLVALAPPV 237

Query: 207 RKAILEYYDL--------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-------- 250
             A+  Y  +         P       + PLF    G  ++    Q  +R+L        
Sbjct: 238 ADAVEAYLAVRLPPTVPALPGHTGPATREPLFLTRTGARVHVSHVQAVLRRLCTTFAPDP 297

Query: 251 ----------RRYLG-----------LPL--STTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     R  L             PL  S   H+ RHS+ATH  + G + R +Q  L
Sbjct: 298 DAPPPRARWLRDLLATERAAFIAEHLAPLRDSIHPHSARHSYATHAKNRGAEARQVQKDL 357

Query: 288 GHFRLSTTQIY 298
           GH  LSTT+ Y
Sbjct: 358 GHTSLSTTEGY 368


>gi|295134620|ref|YP_003585296.1| transposase [Zunongwangia profunda SM-A87]
 gi|294982635|gb|ADF53100.1| putative transposase [Zunongwangia profunda SM-A87]
          Length = 392

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 11/111 (9%)

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +PLL    + ILE Y   P   N +I LP++   +          +Y+R++ + + +   
Sbjct: 283 IPLLEEAER-ILEKYKEHPRVSNSDILLPVYSNQKT--------NQYLREITKAVKINKE 333

Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGD 308
            + H  RH+FAT + L+NG  + ++  +LGH +LSTTQIY  V +SK   D
Sbjct: 334 LSFHAARHTFATTVTLANGVPIETVSKLLGHTKLSTTQIYARVIDSKISND 384


>gi|315608576|ref|ZP_07883560.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
 gi|315249747|gb|EFU29752.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
          Length = 317

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 17/158 (10%)

Query: 158 AILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAI---LEY 213
            +  LLY  G+RISEAL++   ++     S    + K  K RI+P+ P ++  +   L+Y
Sbjct: 123 CLFRLLYSTGMRISEALNIKNGDVNFQSDSIFLTKTKNGKERIIPMNPELKVVLSQYLKY 182

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-----LSTTAHTLRHS 268
            D+ P +     +  LF    GKP        + +++ R  G+           H LRH+
Sbjct: 183 RDMMPVEGICKPERHLFVSGIGKPFTATTPYTFFKKILRQCGIAHKGKNQGPRVHDLRHT 242

Query: 269 FATHLL----SNGGDLRS----IQSILGHFRLSTTQIY 298
           FA H L    + G DL +    +  +LGH  +  T+ Y
Sbjct: 243 FAVHTLQKMATEGVDLYAGLPVLSVLLGHASVRETEWY 280


>gi|157370649|ref|YP_001478638.1| integrase family protein [Serratia proteamaculans 568]
 gi|157322413|gb|ABV41510.1| integrase family protein [Serratia proteamaculans 568]
          Length = 197

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 7/153 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R++ ++++ +  G R+SE   L   ++  D   L I    + +     L +  K +L+ +
Sbjct: 31  RDTCLIWMGFIHGCRVSELTGLRLADLDMDDGCLYISRLKNGLSTTHPLETTEKRLLQRW 90

Query: 215 ----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
                 C    NL+ Q  LF   +G  L+     R +R+  R  GL +    H LRH+  
Sbjct: 91  LEKRQSCR---NLDDQDWLFLSQKGYRLSRQRIFRMLREYGRRAGLDVEAHPHMLRHACG 147

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             L  NG D R IQ  LGH  +  T +YT  N+
Sbjct: 148 YALADNGADTRVIQDYLGHRNIQHTVLYTAANA 180


>gi|89147508|gb|ABD62614.1| integrase [uncultured bacterium]
          Length = 163

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 36/60 (60%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           V QR +R       +      HTLRHSFATHLL  G ++R +Q +LGH  + TT IYT+V
Sbjct: 103 VLQRALRTAVSASDVVKHVKVHTLRHSFATHLLLQGVNIREVQELLGHKSVETTMIYTHV 162


>gi|228949788|ref|ZP_04111998.1| Integrase-recombinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228809846|gb|EEM56257.1| Integrase-recombinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 362

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 68/171 (39%), Gaps = 10/171 (5%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTL--RIQGKGDKIRIVPLLPSVRKAILEY 213
           N  I+ LL   GLRI E  +    ++   +  L  R+ GKGDK R   + P + + I EY
Sbjct: 190 NYMIILLLVSTGLRIQEVANARMGDLFRAEGKLWLRVIGKGDKPREAYISPHLFECISEY 249

Query: 214 YDLCPFDLNLN--IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTL 265
                    LN     PL      +  N       +  +     +P         TAHT 
Sbjct: 250 RSRKGLKTQLNRLDNSPLIVSNHLRKFNSTYLSNKVTSILSQARIPCVEQRENPITAHTF 309

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           RH FA     N  +L  IQ  LGH   +TT+IY   + K   +  +   DQ
Sbjct: 310 RHGFAIMAAENDVELLRIQQTLGHASANTTKIYLEKHMKRKHNAALSFADQ 360


>gi|317124016|ref|YP_004098128.1| integrase [Intrasporangium calvum DSM 43043]
 gi|315588104|gb|ADU47401.1| integrase family protein [Intrasporangium calvum DSM 43043]
          Length = 329

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 114/295 (38%), Gaps = 40/295 (13%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYT---EEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           +GLS  T+ +Y    R  + +L   T    +KI +  I   + T     +   R      
Sbjct: 20  KGLSPNTIAAYRDTWRLLIKYLTASTGVHADKIDLGMIDAEAITTFLDHLEADRGNSAST 79

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-----ALNEKQALTLVDN 140
           R+ +  L+ I++ L             I  +  +      PR     ++ E QAL     
Sbjct: 80  RNAR--LTAIRAVLAVTLPDHPEHAGTIARVLAVPTRRGTPRTVQFLSVEETQAL----- 132

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-LRIQGKGDKIRI 199
             L       W   R+ A+L L    GLR+SE  +LT  +I       +   GKG K R 
Sbjct: 133 --LDAPDPNTWTGRRDRALLTLAIQTGLRVSELTALTTNDIHTGTGAHVTCTGKGRKYRA 190

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            PL  S+   +L  Y      L      P    F G RG+ L+    +R   +L +++  
Sbjct: 191 TPLT-SITLTVLTPY------LAERAARPGAAAFPGPRGQHLSRDALER---RLAKHVST 240

Query: 257 PLS---------TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                        T HTLRH+ A  LL  G D+  I   LGH   S+T +Y + +
Sbjct: 241 ATEHCPSLGGKHVTMHTLRHTAAMRLLQAGVDVAVIALWLGHENTSSTDVYLHAD 295


>gi|257438273|ref|ZP_05614028.1| integrase/recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
 gi|257199350|gb|EEU97634.1| integrase/recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
          Length = 327

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 111/248 (44%), Gaps = 25/248 (10%)

Query: 64  RQLSYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           +Q++  ++R +++    +RR+ K+   +++R LS   SF  +L+      +S +  +  +
Sbjct: 89  QQITTDDLRRYLTDYQTQRRSSKVTIDNIRRILS---SFFSWLEDEDFIVKSPVRRIHKV 145

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K +  +     ++    + DN              R+ AI+ LL   G+R+ E ++L  +
Sbjct: 146 KTAKIIRETYTDEALELMRDNCST----------VRDLAIIDLLASSGMRVGELVTLNRE 195

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKP 237
           +I  ++    + GKG+K R+V      +  +  Y      D   +    LF  ++   + 
Sbjct: 196 DINFNERECVVFGKGNKERLVYFDARTKIHLQNY-----LDERSDSNPALFVTLKEPHER 250

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L  G  +  +R+L R L L      H  R + AT  +  G  +  +Q +LGH ++ TT  
Sbjct: 251 LMIGGVETMLRELGRRLKLN-KVHPHKFRRTLATSAIDKGMPIEQVQQLLGHQKIDTTMH 309

Query: 298 YTNVNSKN 305
           Y  V  +N
Sbjct: 310 YAMVKQQN 317


>gi|323343426|ref|ZP_08083653.1| integrase [Prevotella oralis ATCC 33269]
 gi|323095245|gb|EFZ37819.1| integrase [Prevotella oralis ATCC 33269]
          Length = 407

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 20/153 (13%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYY 214
           A ++ LY CGLR  +   LT +NI      L+ +    KG       ++P +   +L   
Sbjct: 255 AFIFCLY-CGLRFCDVKDLTYKNIDYTNRLLKFEQNKTKGHSAHSGVVIP-LNDGLLSLI 312

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL---GLPLSTTAHTLRHSFAT 271
              P DLN +I             N   ++   + ++R++   G+    + H  RHSFA 
Sbjct: 313 GDAPDDLNSSI------------FNLPSYESCCKSVKRWVKRAGINKHISWHCARHSFAV 360

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           ++L+NG +++++ S+LGH  L  T+ YT    K
Sbjct: 361 NILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|304436275|ref|ZP_07396258.1| phage integrase family integrase/recombinase [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304370732|gb|EFM24374.1| phage integrase family integrase/recombinase [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 328

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 120/278 (43%), Gaps = 26/278 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G S  TL  YE   R  L  +     +K  + T  +   + + ++  +    ++   +++
Sbjct: 65  GCSSKTLHYYEKSIRTMLAHV-----QKEVVHTTTEDLRSYLTSYQERGGLSRVTVDNVR 119

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R LS   SF  +L+      +S +  +  +K + ++    ++++   + D     + HE+
Sbjct: 120 RILS---SFFAWLEDEDYIVKSPVRRIHRVKTAENIKATYSDEELEAMRD-----SCHES 171

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
                R+ A++ +L   G+R+ E + L   ++  ++    + GKG+K RIV      +  
Sbjct: 172 -----RDLAMIDMLASTGMRVGEMVRLNRSDVDFNERECVVLGKGNKERIVYFDARTKIH 226

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +  Y      +   + +  LF G+R     L+    +  +R L R +G+      H  R 
Sbjct: 227 LQAY-----LESRTDGEAALFVGLRSPRSRLSISGIESRLRTLGRRIGME-KVHPHKFRR 280

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           + AT  +  G  +  +Q +LGH R+ TT  Y  V   N
Sbjct: 281 TLATRAIDKGMPIEQLQQLLGHKRIDTTLHYAMVKQSN 318


>gi|237725748|ref|ZP_04556229.1| integrase [Bacteroides sp. D4]
 gi|229435556|gb|EEO45633.1| integrase [Bacteroides dorei 5_1_36/D4]
          Length = 409

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 102/206 (49%), Gaps = 26/206 (12%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLT 177
           KK+ + PRAL+ +++   + +V +  ++    I AR+      L+GC  G+  ++ +S+T
Sbjct: 217 KKTETTPRALS-RESFERIRDVEI-PAYRKSHILARD----MFLFGCYTGVCYADVVSIT 270

Query: 178 PQNIMDDQST---LRIQGKGDKIRI-VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
            +N+  D+     L+ + K +++R  V LLP     I +Y+       + +   PL    
Sbjct: 271 HENLYTDEDGALWLKYRRKKNELRASVKLLPEAVTLIEKYHSE-----DRDTLFPL---- 321

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRL 292
               L+    +R+++ L    G+      H  RHSFA+ + L  G  + +I  +LGH  +
Sbjct: 322 ----LHWPNLRRHMKALATLAGIKDDLCYHQARHSFASLITLEAGVPIETISRMLGHSDI 377

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTH 318
           STTQ+Y  V+ K   + M +  + TH
Sbjct: 378 STTQVYARVSPKKLFEDMDKFIEATH 403


>gi|228942827|ref|ZP_04105346.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228952547|ref|ZP_04114624.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228976709|ref|ZP_04137133.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228783010|gb|EEM31165.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228807158|gb|EEM53700.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228816841|gb|EEM62947.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326943508|gb|AEA19401.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 365

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 95/196 (48%), Gaps = 26/196 (13%)

Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           TT+ NIL ++  K+     + +  KQA       L+H +      + R+  I+ +LY  G
Sbjct: 161 TTKINILKLKEPKRK---IKTITTKQA------ELIHIACN----NIRDELIIRILYEGG 207

Query: 168 LRISEALSLTPQ--NIMDDQSTLRIQG--KGDKIRIV---PLLPSVRKAILEYYDLCPFD 220
           LR SE LSL  +  NI D   T+R      G+K ++      +   +  I++Y+     D
Sbjct: 208 LRASELLSLWIEDFNINDGSITVRESKTQAGEKRKVYVSNETMNLFQDYIIDYH---TND 264

Query: 221 LNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
           ++ N      +G  +G+P+     Q  IR L +     ++ TAHTLRH+ AT L   G D
Sbjct: 265 VDSNHVFINLKGKNKGQPMQYWALQAVIRILSK--KTKINFTAHTLRHTCATQLYDLGMD 322

Query: 280 LRSIQSILGHFRLSTT 295
              IQ +LGH ++ TT
Sbjct: 323 AGIIQKLLGHAQVQTT 338


>gi|298528846|ref|ZP_07016249.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298529859|ref|ZP_07017261.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298529886|ref|ZP_07017288.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509233|gb|EFI33137.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509260|gb|EFI33164.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510282|gb|EFI34185.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 338

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 119/291 (40%), Gaps = 27/291 (9%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           Q L   +G+S  T+ +Y      FL F +      I    I  LS   I  F+    + +
Sbjct: 13  QYLPRTKGVSSNTILAYRHTFSLFLPFASKTLGRDINSLEIEHLSTQLILDFLDHLESGR 72

Query: 83  IGD-RSLKRSLSGIKSF---LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               R+    L+  KS    +++L          I+++   +    L   L  ++ L ++
Sbjct: 73  NNSARTRGHRLAVFKSLARMIRFLYPEHKLLADRIISIPQKRFPKKLAAFLTHEEVLLVL 132

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D++ L  S        R+  I++LLY  G R  E+ SL        + TL I GKG++ R
Sbjct: 133 DSINLKKSGA-----FRDYTIIHLLYNSGARAEESASLRLDYFDPHKKTLAILGKGNRYR 187

Query: 199 IVPLLPSVRKAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYL 254
            + L P   + +  Y   Y   P  L+ N    LF   R +     G++    R  R+YL
Sbjct: 188 QIELWPKTVQLMSMYIQKYRPRPKPLHQNT---LFLNQRRQGFTRNGIY----RLCRKYL 240

Query: 255 GLPLSTT-------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            L             H  RHS A ++L  G  L  I++ LGH  L +T +Y
Sbjct: 241 SLVFEENRFQGLNPVHCFRHSCAINMLGTGFSLTDIKNHLGHENLQSTMVY 291


>gi|237716536|ref|ZP_04547017.1| integrase [Bacteroides sp. D1]
 gi|262405315|ref|ZP_06081865.1| integrase [Bacteroides sp. 2_1_22]
 gi|294644634|ref|ZP_06722387.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294810165|ref|ZP_06768833.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229442519|gb|EEO48310.1| integrase [Bacteroides sp. D1]
 gi|262356190|gb|EEZ05280.1| integrase [Bacteroides sp. 2_1_22]
 gi|292640071|gb|EFF58336.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294442629|gb|EFG11428.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 409

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 93/192 (48%), Gaps = 26/192 (13%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLT 177
           K+S+  PRAL+ +++   + +V +   H    I AR+      L+GC  G+  ++ +S+T
Sbjct: 217 KQSDKTPRALS-RESFEKIRDVEIE-PHRKSHILARD----MFLFGCYTGVSYADVISIT 270

Query: 178 PQNI-MDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
            +N+  DD   L ++    K +    V LLP     I +Y+       + +   PL R  
Sbjct: 271 DENLYTDDNGALWLKYRRKKNEHRASVKLLPEAIALIEKYHSE-----DRDTLFPLLRW- 324

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRL 292
                 P + +R+++ L    G+      H  RHSFA+ + L  G  + +I  +LGH  +
Sbjct: 325 ------PNL-RRHMKALAALAGIKDDLCYHQARHSFASLITLEAGVPIETISRMLGHSDI 377

Query: 293 STTQIYTNVNSK 304
           STTQ+Y  V+ K
Sbjct: 378 STTQVYARVSPK 389


>gi|90580685|ref|ZP_01236489.1| Tn554, transposase A [Vibrio angustum S14]
 gi|90438142|gb|EAS63329.1| Tn554, transposase A [Vibrio angustum S14]
          Length = 359

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 111/242 (45%), Gaps = 31/242 (12%)

Query: 79  RTQKIGDRSLKR--SLSG-IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           R+ K+ D  + R  + SG  KSFL ++   K + +S +L ++  K+          +Q +
Sbjct: 120 RSGKVADLKIYRDGAFSGKYKSFLHHITSGK-SIQSRVLKLKEPKRGLKTLTKPQVQQVI 178

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQG- 192
              +N+             R+  I+ L+Y  G+RI + L L  ++I   D+Q  +R +  
Sbjct: 179 EACNNL-------------RDKFIICLMYETGMRIGQVLGLRHEDIKSGDNQIAIRFRSN 225

Query: 193 -------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQ 244
                  K  +  +V +  S+     +Y+     ++  + + + L+ G  G P+  G   
Sbjct: 226 NENNARSKSREDNLVDVSSSIVSLYTDYFIHEYGEVESDYVFVNLWDGEIGAPMKYGSVI 285

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
              +++ +  G+ +  T H  RH+ AT LL  G DL  IQ  LGH  + TT  IY +++S
Sbjct: 286 TLFKRISKKTGIDV--TPHIFRHTHATELLRAGWDLAYIQKRLGHSDIQTTANIYAHLSS 343

Query: 304 KN 305
            +
Sbjct: 344 DD 345


>gi|312890652|ref|ZP_07750186.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311296818|gb|EFQ73953.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 409

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 16/156 (10%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQS----TLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
            ++ C  GL   +  +LTP N++  Q      +  + K +    VPLLP   + I++ Y 
Sbjct: 254 FVFSCYTGLAYVDVYNLTPANLVKGQDGNLWIMTSRQKTNTAVKVPLLPKALE-IIDKYK 312

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
             P  +     LP+   +  + LN      Y++++     +    T H  RH+FAT + L
Sbjct: 313 GHPQAIAEGKLLPV---LTNQKLNS-----YLKEIADMCAILKPLTFHIARHTFATTITL 364

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           +NG  + S+  +LGH +LSTTQ+Y  V      D M
Sbjct: 365 TNGVPIESVSKMLGHTKLSTTQVYAKVVESKLSDDM 400


>gi|315425752|dbj|BAJ47407.1| conserved hypothetical protein [Candidatus Caldiarchaeum
           subterraneum]
          Length = 355

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 120/281 (42%), Gaps = 44/281 (15%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T ++Y    R+F+    F       +    +    ++  FI   R + +  +S++     
Sbjct: 38  TAENYRAAMRRFVTTCGFSD----LVDAAMRAEEKDLVLFIRHLRDEGLAPQSIRLHYQA 93

Query: 95  IKSFLK-YLKKRKITTESNIL-NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           +KSFL  Y +    +   N+L   RN++ + ++PR         +V+ VL +  + TK +
Sbjct: 94  VKSFLSLYARPINWSRVENLLPKKRNVRFNEAVPR--------DVVEAVLENMDNSTKRL 145

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
                  ++L++  GLRI EALSL  ++I   +D      I  K  + R VPL   + +A
Sbjct: 146 ------AIWLIWATGLRIGEALSLRARDIDFTIDPPKLTVISEKTHEPREVPLPTDIAEA 199

Query: 210 ILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNP-------GVFQRYI----RQLRRYLGLP 257
           + ++   L P D   +         RG P  P         F+  +    R  R   G+ 
Sbjct: 200 LKQHLQRLQPGDFIFH--------PRGNPSKPLARTKLRAAFRSALIKANRAERDKSGIG 251

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              T H LR S+ T+L+  G +   +  +LGH R+   Q Y
Sbjct: 252 WRYTIHGLRRSYETNLVRAGVNSMVVGLLLGH-RIGIEQHY 291


>gi|38638105|ref|NP_943215.1| resolvase [Erwinia amylovora]
 gi|37682003|gb|AAQ97890.1| ResD [Erwinia amylovora]
 gi|323700929|gb|ADY00082.1| resolvase [Escherichia coli]
          Length = 246

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 94/219 (42%), Gaps = 42/219 (19%)

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
           ++ L +R +     LP+ L   +    +  V           D R   +   L+  G RI
Sbjct: 30  ADALALREMASQADLPKYLLAPEVSVFLRYV----------PDLRQQVLFDTLWNTGARI 79

Query: 171 SEALSLTPQNIMDDQS-------TL--RIQGKG------DKIRIVPLL-PSVRKAILEYY 214
           +EAL+LT  +   D S       TL  R +G+G      +  R+VPL  P   + + E+ 
Sbjct: 80  NEALALTGASFQLDGSRPFVRLKTLKQRQRGRGRPGKDEEVFRLVPLTDPQYVRKVREFL 139

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-YIRQL-----RRYLGLPLSTTAHTLRHS 268
                 L +  Q  L+      P+      R +IR+      R  +   +  T HT RHS
Sbjct: 140 T----TLRIGKQQLLW------PVQSDNTPRNWIRKALDLAKRDSVTFSIPVTCHTFRHS 189

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           F  HL+ +G  L+ +Q+  GH RL TT+ YT V + + G
Sbjct: 190 FCMHLIQHGVPLKVVQAYAGHSRLETTETYTRVFALDVG 228


>gi|13358093|ref|NP_078367.1| integrase-recombinase protein [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|170762050|ref|YP_001752614.1| integrase-recombinase protein [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|171920189|ref|ZP_02931574.1| integrase-recombinase protein [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|186701629|ref|ZP_02971333.1| integrase-recombinase protein [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
 gi|11356975|pir||C82878 integrase-recombinase protein UU529 [imported] - Ureaplasma
           urealyticum
 gi|6899533|gb|AAF30942.1|AE002152_1 integrase-recombinase protein [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|168827627|gb|ACA32889.1| integrase-recombinase protein [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|171902566|gb|EDT48855.1| integrase-recombinase protein [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|186700862|gb|EDU19144.1| integrase-recombinase protein [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
          Length = 251

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 102/213 (47%), Gaps = 30/213 (14%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           LS  K++LK++  +    ++ ++ M   KK   +   L     L +++N+     ++  +
Sbjct: 55  LSAFKAYLKFINHK----DAILIVMP--KKEIKVKEFLTWDNFLKIINNI-----NQATF 103

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           +  +   IL +L+  G+R  E L L  ++I +++  L+I GKG K R V L   ++  I 
Sbjct: 104 LGFQKYLILRILFETGIRSCELLKLEIKDIYENK--LKIHGKGKKERFVYLSNDLQNNIK 161

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           +Y                   I+ K L    ++   +++ R +   +  T H LR SFA 
Sbjct: 162 KY----------------IGQIKTKYLFNFSYKNLYQKVTR-IKTNIRLTPHILRRSFAN 204

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           H ++NG ++  +  ++GH  +++T +Y N  SK
Sbjct: 205 HCINNGINIYDLSLVMGHNNINSTSLYLNKESK 237


>gi|260171385|ref|ZP_05757797.1| transposase [Bacteroides sp. D2]
 gi|315919698|ref|ZP_07915938.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693573|gb|EFS30408.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 308

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 42/187 (22%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-------PLL---PSVRKA 209
           +Y+    GLRI E  +LT  +I  +   + I+   ++I I+        L+   P  + +
Sbjct: 134 IYICLSTGLRIGEVCALTWDDINIELGIISIKRTIERIYIIDGEKRHTELIINTPKTKNS 193

Query: 210 ILEYYDLCPFDLNL-NIQLPLFRGIRG---------KPLNPGVFQRYIRQLRRYLGLPLS 259
           I E     P    L  I  PL + + G         KP  P  ++ Y ++L + L +P  
Sbjct: 194 IRE----IPITKELIRILKPLKKIVNGNYYILTNEEKPTEPRTYRNYYKKLMKDLNIP-E 248

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRHSFAT  + +  D +++  ILGH  +STT               +++Y   HP
Sbjct: 249 LKFHGLRHSFATRCIESNCDYKTVSVILGHSNISTT---------------LDLY--VHP 291

Query: 320 SITQKDK 326
           ++ QK K
Sbjct: 292 NMEQKKK 298


>gi|158340586|ref|YP_001521580.1| tyrosine recombinase XerC [Acaryochloris marina MBIC11017]
 gi|158310827|gb|ABW32441.1| tyrosine recombinase XerC [Acaryochloris marina MBIC11017]
          Length = 348

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 3/150 (2%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR-IVPLLPSVRKAILE 212
           AR+ A++ LL+  GLR SE +    ++   +Q  L I GKG   R  + L  S   AI E
Sbjct: 171 ARDFAMMTLLWEAGLRRSELVGCDVRHFDSEQKRLSILGKGRNEREWIDLTESGVLAISE 230

Query: 213 YYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS-FA 270
           +  L   + L   + + L R   G  L+     R +R L +  G+  +   H +RHS   
Sbjct: 231 WLKLREVYALTEPLFISLDRANWGSRLSGTSVYRIVRALAKKAGVSENFGPHKVRHSGTT 290

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           T+L   GGDLR  Q+   H  L+T + Y +
Sbjct: 291 TYLEMTGGDLRGAQAYSRHANLNTLKFYDD 320


>gi|134287698|ref|YP_001109864.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134132348|gb|ABO60083.1| phage integrase family protein [Burkholderia vietnamiensis G4]
          Length = 573

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 123/294 (41%), Gaps = 39/294 (13%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           + LS LT +    D   +  FL   T  +  +   R  + T+ R F+       +  RS+
Sbjct: 259 KALSSLTTR----DATDYRAFLRRPTPRERWVGPPRPRTSTDWRPFV-----DNLSARSI 309

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT--- 145
             +L+ + +  ++L +++    +    ++      ++  A+    A T  + +L  T   
Sbjct: 310 AHALAVLSAMFRWLVEQRYVVANPFAGIKVRGSKRAM--AVETAHAFTEGEWLLTRTIAN 367

Query: 146 --SHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDDQST---LRIQGKGDKI 197
                  W  A    + ++L   Y  GLRISE  + T +N+  D +    L + GKG K 
Sbjct: 368 GLEWSYGWQAAAAQRLRFMLDFGYATGLRISELANATLRNVEVDAAGDHWLHVTGKGGKP 427

Query: 198 RIVPLLPSVRKAILEYYD---LCPFDLNLNIQLPLF----RGIRG-KPLN-PGVFQRYIR 248
             V L P  R A+  Y     L       N   PL      G  G KPL    V +R+ R
Sbjct: 428 ARVTLTPLARAALDRYLQERGLAVSRARWNPVTPLIGSLDDGDAGIKPLRLWEVMRRFFR 487

Query: 249 QLRRYL---GLPLS-----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           Q  + +     PL+      T H +RH+ ATH ++ G +L +++  L H  +ST
Sbjct: 488 QAAQIIENDHPPLAEKLRQATPHWMRHTHATHAIAKGVELSAVRDNLRHASIST 541


>gi|167746743|ref|ZP_02418870.1| hypothetical protein ANACAC_01455 [Anaerostipes caccae DSM 14662]
 gi|167653703|gb|EDR97832.1| hypothetical protein ANACAC_01455 [Anaerostipes caccae DSM 14662]
          Length = 351

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 114/250 (45%), Gaps = 16/250 (6%)

Query: 60  IQTIRQLSYTE-IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNM 116
           I+++    Y E ++ ++S  +  +  +R + R +S +++F  Y  KR++  T  + +++M
Sbjct: 82  IESVDLEEYMEYLKTYVSDDKRMQNTERGIFRKMSSLRTFYAYYYKRQLIKTNPTLLVDM 141

Query: 117 RNLKKSNSLPRALNEKQALTLV-----DNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
             + +   +    +E  +L        DN+        +    R+ AI+ LL G G+R+S
Sbjct: 142 PRIHEKEIIRLEADEVASLLDFIEKGGDNLTGQKRMYYEKTKERDLAIITLLLGTGIRVS 201

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQ 226
           E + L   ++    + L +  KG K   V     V  A+L+Y +     + P + + N  
Sbjct: 202 ELVGLDMNDVDFKNNGLHLIRKGRKEMTVYFGDEVSDALLQYIEGSRSKIIPREGHEN-- 259

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
             LF  ++ K +     Q  +++  R +      T H LR ++ T L     D+  +  +
Sbjct: 260 -ALFYSMQRKRIGVQAVQNLVKKYARQVTPLKKITPHKLRSTYGTALYEETDDIYLVAEV 318

Query: 287 LGHFRLSTTQ 296
           LGH  ++TT+
Sbjct: 319 LGHNDVNTTR 328


>gi|158339787|ref|YP_001520794.1| tyrosine recombinase XerC, putative [Acaryochloris marina
           MBIC11017]
 gi|158310028|gb|ABW31644.1| tyrosine recombinase XerC, putative [Acaryochloris marina
           MBIC11017]
          Length = 360

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 3/150 (2%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR-IVPLLPSVRKAILE 212
           AR+ A+L LL+  GLR SE +    ++   +Q  L I GKG   R  + L  S   AI E
Sbjct: 182 ARDFAMLTLLWEAGLRRSELVGCDVRHFDSEQKRLSILGKGRNEREWIDLTESGVLAISE 241

Query: 213 YYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS-FA 270
           + +    + L   + + L R   G  L+     R +R L +  G+  +   H +RHS   
Sbjct: 242 WLEKREVYALTEPLFISLDRANWGSRLSGTSVYRIVRALAKKAGVSENFGPHKIRHSGTT 301

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           T+L   GGDLR  Q+   H  L+T + Y +
Sbjct: 302 TYLEMTGGDLRGAQAYSRHANLNTLKFYDD 331


>gi|261402720|ref|YP_003246944.1| integrase family protein [Methanocaldococcus vulcanius M7]
 gi|261369713|gb|ACX72462.1| integrase family protein [Methanocaldococcus vulcanius M7]
          Length = 323

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 8/152 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R++ I+ LL+  G R+SE L+L  +++  ++  +RI    ++     +  S    +L +Y
Sbjct: 159 RDALIVRLLWDTGARVSEILNLRYKDVDFNEGIIRITNTKNREERKVVCASETLELLRHY 218

Query: 215 DLCPFDLNLNIQLPLFRGIRG----KPLNPGVFQRYIRQLRRYLGLPLST--TAHTLRHS 268
             C F++    +  LF+  RG    K     VF++ + +L++   +P +     H+LRH 
Sbjct: 219 --CQFNIRQGPEDYLFQNNRGGRVRKDWISEVFRKAVDELKKEGKIPPNKRIVIHSLRHG 276

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            A  LL  G  L  ++  LGH  L  T  Y++
Sbjct: 277 RAVDLLEKGLPLDVVKEYLGHRSLEVTLFYSH 308


>gi|160887306|ref|ZP_02068309.1| hypothetical protein BACOVA_05324 [Bacteroides ovatus ATCC 8483]
 gi|156107717|gb|EDO09462.1| hypothetical protein BACOVA_05324 [Bacteroides ovatus ATCC 8483]
          Length = 308

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 42/187 (22%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-------PLL---PSVRKA 209
           +Y+    GLRI E  +LT  +I  +   + I+   ++I I+        L+   P  + +
Sbjct: 134 IYICLSTGLRIGEVCALTWDDINIELGIISIKRTIERIYIIDGEKRHTELIINTPKTKNS 193

Query: 210 ILEYYDLCPFDLNL-NIQLPLFRGIRG---------KPLNPGVFQRYIRQLRRYLGLPLS 259
           I E     P    L  I  PL + + G         KP  P  ++ Y ++L + L +P  
Sbjct: 194 IRE----IPITKELIRILKPLKKIVNGNYYILTNEEKPTEPRTYRNYYKKLMKDLNIP-E 248

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRHSFAT  + +  D +++  ILGH  +STT               +++Y   HP
Sbjct: 249 LKFHGLRHSFATRCIESNCDYKTVSVILGHSNISTT---------------LDLY--VHP 291

Query: 320 SITQKDK 326
           ++ QK K
Sbjct: 292 NMEQKKK 298


>gi|294491667|gb|ADE90423.1| integrase/recombinase, phage integrase family [Escherichia coli
           IHE3034]
 gi|323161587|gb|EFZ47473.1| integrase [Escherichia coli E128010]
          Length = 334

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 22/143 (15%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +  L    G R SEA  L  + I+ ++ T  ++ K  + R VP+  +V +AI        
Sbjct: 185 VALLCLSTGARWSEACKLRGEQIVHNRVTF-LETKNGRKRTVPISQAVCEAIKTRETGSL 243

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-GLPLSTTAHTLRHSFATHLLSNG 277
           F++                     ++ +   L+R    LP    AH LRH+FA+H + NG
Sbjct: 244 FEVK--------------------YREFCLALKRVKPDLPKGQAAHVLRHTFASHFVMNG 283

Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300
           G++ ++Q ILGH  +  T  Y +
Sbjct: 284 GNIIALQKILGHATIQQTMAYAH 306


>gi|171057465|ref|YP_001789814.1| integrase family protein [Leptothrix cholodnii SP-6]
 gi|170774910|gb|ACB33049.1| integrase family protein [Leptothrix cholodnii SP-6]
          Length = 333

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 99/231 (42%), Gaps = 21/231 (9%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           +  R L+ ++ F+++L++   T E    +          P   +E +   L+  V     
Sbjct: 78  TAARRLATLRPFMRWLQQFDPTVEVPDDSSFGPIPRRVAPHIYSEAEIAALI--VAARRL 135

Query: 147 HETKWIDARNSAILY-LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLP 204
             +  + A   A L+ L+   GLR+SEA++L   +   +   L IQ  K  K R+VPL P
Sbjct: 136 GPSDGLRAATYATLFGLIASAGLRVSEAINLADSDADLEGRVLTIQQTKFGKSRMVPLHP 195

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLF---RGI-RGKPLNPGVFQRYIRQLRRYLGL---- 256
           SV   +  Y  L    +    Q+  F   RG+ RGKPL      R   QLR  LG     
Sbjct: 196 SVIGPLAAYRALRRQHVQPRPQMTFFVGSRGVRRGKPLGDRQVHRMFCQLREQLGWIDRG 255

Query: 257 -PLSTTAHTLRHSFATHLL----SNGGDLR----SIQSILGHFRLSTTQIY 298
                  H LRHSFA   +      G +L     ++ + +GH  +S+T  Y
Sbjct: 256 GHGRPRVHDLRHSFAVRRMILWHQQGANLDQRMLALSTYMGHINISSTYWY 306


>gi|27383455|ref|NP_774985.1| resolvase [Citrobacter freundii]
 gi|216967835|ref|YP_002333343.1| ResD [Klebsiella pneumoniae]
 gi|27261308|gb|AAN87649.1| resolvase [Citrobacter freundii]
 gi|215398007|gb|ACJ65284.1| resD [Klebsiella pneumoniae]
          Length = 242

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 94/219 (42%), Gaps = 42/219 (19%)

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
           ++ L +R +     LP+ L   +    +  V           D R   +   L+  G RI
Sbjct: 26  ADALALREMASQADLPKYLLAPEVSVFLRYV----------PDLRQQVLFDTLWNTGARI 75

Query: 171 SEALSLTPQNIMDDQS-------TL--RIQGKG------DKIRIVPLL-PSVRKAILEYY 214
           +EAL+LT  +   D S       TL  R +G+G      +  R+VPL  P   + + E+ 
Sbjct: 76  NEALALTGASFQLDGSRPFVRLKTLKQRQRGRGRPGKDEEVFRLVPLTDPQYVRKVREFL 135

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-YIRQL-----RRYLGLPLSTTAHTLRHS 268
                 L +  Q  L+      P+      R +IR+      R  +   +  T HT RHS
Sbjct: 136 T----TLRIGKQQLLW------PVQSDNTPRNWIRKALDLAKRDSVTFSIPVTCHTFRHS 185

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           F  HL+ +G  L+ +Q+  GH RL TT+ YT V + + G
Sbjct: 186 FCMHLIQHGVPLKVVQAYAGHSRLETTETYTRVFALDVG 224


>gi|317131475|ref|YP_004090789.1| integrase family protein [Ethanoligenens harbinense YUAN-3]
 gi|315469454|gb|ADU26058.1| integrase family protein [Ethanoligenens harbinense YUAN-3]
          Length = 330

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 61/283 (21%), Positives = 123/283 (43%), Gaps = 36/283 (12%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK----RRTQKIGD 85
           G S+ +L+ Y+   R  ++ +A         + +R++   ++R +++     R + K+  
Sbjct: 67  GCSEKSLKYYDATIRHMIVDIA---------KPVREIDTGDLRIYLANYQKLRNSSKVTI 117

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            +++R  S   SF  +L+      +S +  +  +K   ++    +++    L D      
Sbjct: 118 DNMRRIFS---SFFGWLEDEDYILKSPVRRIHKIKTEKTIKDTFSDEGLEKLRD------ 168

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
                  + R+ A++ LL   G+R+ E + L  +++   +    + GKG K R+V     
Sbjct: 169 ----ACDELRDLAMVDLLASTGMRVGELVQLNREDMNFHERECLVLGKGGKERMVYFDAR 224

Query: 206 VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            +  +  Y D    D   L +++  P  R + G     GV  R IR++ +   L      
Sbjct: 225 TKIHLRNYLDSRSDDNPALFVSLTSPHERLLIG-----GVETR-IREIGKNAALQ-KVHP 277

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN +N
Sbjct: 278 HKFRRTLATRAIDKGMPIEQVQRLLGHVKIDTTMHYAMVNQEN 320


>gi|169825072|ref|YP_001692683.1| putative integrase [Finegoldia magna ATCC 29328]
 gi|167831877|dbj|BAG08793.1| putative integrase [Finegoldia magna ATCC 29328]
          Length = 327

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 53/250 (21%), Positives = 113/250 (45%), Gaps = 27/250 (10%)

Query: 63  IRQLSYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
           +R++   ++R +++    ++ + K+   +++R  S   SF  +L+      +S +  +  
Sbjct: 88  VREIETNDLREYLTGYQKEKNSSKVTIDNIRRIFS---SFFSWLEDEDYIIKSPVRRIHR 144

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           +K + ++    +++   T+ D+            + R+ A++ +L   G+RI E + L  
Sbjct: 145 VKSATTIKETYSDENLETMRDSCS----------ELRDLALIDILASTGMRIGELVHLNR 194

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD---LNLNIQLPLFRGIRG 235
           ++I  ++    + GKG K R+V      +  + EY +    D   L ++++ P  R    
Sbjct: 195 KDINFEERECVVFGKGSKERMVYFDARTKIHLQEYLNSRKDDNPALFVSLKAPYDR---- 250

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             +  G  +  +R + R LG+      H  R + AT  +  G  +  +Q +LGH R+ TT
Sbjct: 251 --MKIGGIEARLRGIGRNLGIE-KVHPHKFRRTLATMAIDKGMPIEQLQQLLGHKRIDTT 307

Query: 296 QIYTNVNSKN 305
             Y  V   N
Sbjct: 308 LQYAMVKQSN 317


>gi|324993830|gb|EGC25749.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK405]
 gi|324994849|gb|EGC26762.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK678]
 gi|327474704|gb|EGF20109.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK408]
          Length = 328

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 121/283 (42%), Gaps = 36/283 (12%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS----KRRTQKIGD 85
           G S+ +L+ Y+      LI L            IR L+  ++R +++    +R++ K+  
Sbjct: 65  GCSEKSLKYYKIVIENMLISLK---------TAIRDLTTGDLRTYLAHYQQERKSSKVTI 115

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            +++R  S   SF  +L+      +S +  +  +K   ++    +++    L D      
Sbjct: 116 DNMRRIFS---SFFGWLEDEDYILKSPVRRIHKIKTDKTIKETFSDEGLELLRD------ 166

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
                  + R+ A++ LL   G+R+ E + L  ++I   +    + GKG+  RIV     
Sbjct: 167 ----ACDEIRDLAMIDLLASTGMRVGELVRLNREDINFYERECLVFGKGNSERIVYFDAR 222

Query: 206 VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            +  ++ Y D    D   L +++  P  R + G     GV  R +RQ+     L      
Sbjct: 223 TKIHLINYLDNRQDDNPALFVSLSFPYNRLLIG-----GVETR-LRQIGEKADLN-KVHP 275

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN  N
Sbjct: 276 HKFRRTLATRAIDKGMPIEQVQHLLGHVKIDTTMHYAMVNQAN 318


>gi|210611276|ref|ZP_03288831.1| hypothetical protein CLONEX_01021 [Clostridium nexile DSM 1787]
 gi|210152040|gb|EEA83047.1| hypothetical protein CLONEX_01021 [Clostridium nexile DSM 1787]
          Length = 327

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 113/249 (45%), Gaps = 29/249 (11%)

Query: 65  QLSYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           Q++  ++R +++    +R++ K+   +++R LS   SF  +L+      +S +  +  +K
Sbjct: 90  QVTTEDLRKYLTTYQTQRKSSKVTIDNIRRILS---SFFSWLEDEDFILKSPVRRIHKVK 146

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
            +  +     ++    + DN              R+ AI+ LL   G+R+ E + L  ++
Sbjct: 147 TAKLVKDTYTDEALELMRDNC----------TTTRDLAIIDLLASSGMRVGEMVMLNRED 196

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGK 236
           I  ++    + GKG+K R+V      +  +  Y     D  P  L +++  P  R + G 
Sbjct: 197 IDFNERECVVIGKGNKERLVYFDARTKIHLQNYLNERTDTNPA-LFVSLNPPHDRLMIG- 254

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
               GV  R +R+L + L LP     H  R + AT  +  G  +  +Q +LGH ++ TT 
Sbjct: 255 ----GVETR-LRELGKRLNLP-KVHPHKFRRTLATSAIDKGMPIEQVQQLLGHQKIDTTM 308

Query: 297 IYTNVNSKN 305
            Y  V  +N
Sbjct: 309 HYAMVKQQN 317


>gi|158340931|ref|YP_001522098.1| phage integrase family protein [Acaryochloris marina MBIC11017]
 gi|158311172|gb|ABW32784.1| phage integrase family protein [Acaryochloris marina MBIC11017]
          Length = 205

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 71/159 (44%), Gaps = 15/159 (9%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL----LPSVRKA 209
           R+ A+L L++  GLR+SEA+SL    +M +   + I + KG      PL    + S+R  
Sbjct: 53  RDKALLLLMFRHGLRVSEAISLRWDAVMLELKAIGITRLKGSVSGTHPLQADEVESLRDL 112

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
             E Y   P+         LF G RG  L        I +      L +    H LRHS 
Sbjct: 113 RAEGYPD-PY---------LFVGERGGHLKRHAVTSLINRCAELAQLGIKCHPHMLRHSC 162

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
             HL + G D R IQ  LGH  +  T  YT +N K  G+
Sbjct: 163 GYHLANQGLDTRLIQDWLGHRNIQHTVTYTMLNPKRFGE 201


>gi|89147638|gb|ABD62678.1| integrase [uncultured bacterium]
          Length = 163

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 4/66 (6%)

Query: 238 LNPGVFQRYIRQ--LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           ++    Q+ +R   LR  +  P   T  + RHSFATHLL  G D+R++Q  LGH  + TT
Sbjct: 99  IDESAMQKAMRAALLRSRISKP--ATCRSFRHSFATHLLERGADIRTVQEQLGHSDVRTT 156

Query: 296 QIYTNV 301
           QIYT+V
Sbjct: 157 QIYTHV 162


>gi|326331609|ref|ZP_08197898.1| putative integrase/recombinase XerD [Nocardioidaceae bacterium
           Broad-1]
 gi|325950597|gb|EGD42648.1| putative integrase/recombinase XerD [Nocardioidaceae bacterium
           Broad-1]
          Length = 334

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 92/217 (42%), Gaps = 20/217 (9%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNEKQALTLVDNVLLHT 145
           ++ R LS I  F +Y     + + S   +++  K SN S    ++  +A   +     H+
Sbjct: 98  TIARRLSAIAGFYRYGVAEDVLSASPAQHIKRPKTSNDSQTLGMDRGEARAFLAAAREHS 157

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLL 203
           S        R +A++ LL   GLRISEAL     ++   +    L I  KG   R V L 
Sbjct: 158 S--------RAAALVMLLLHDGLRISEALGADVTDLSHSRGHRILTITRKGGARRDVVLN 209

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST--T 261
           P+  +A+  Y       L+  +  P+F    G   +     R IR+L    G+      +
Sbjct: 210 PATSQALDAY-------LDARVDGPVFVTSTGNRWHRSEAFRLIRRLGASAGIEHGDKLS 262

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            H+LRH+F T     G  L  +Q   GH    TT+ Y
Sbjct: 263 PHSLRHTFVTLAREAGVPLEDVQDAAGHADPRTTRRY 299


>gi|303255271|ref|ZP_07341342.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae BS455]
 gi|303260417|ref|ZP_07346386.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP-BS293]
 gi|303265063|ref|ZP_07350977.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS397]
 gi|302597740|gb|EFL64815.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae BS455]
 gi|302638452|gb|EFL68918.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP-BS293]
 gi|302645423|gb|EFL75656.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS397]
          Length = 321

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 113/253 (44%), Gaps = 29/253 (11%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRS----LKRSLSGIKSFLKYLKKRKITTESNILNM 116
           +++ QL+  ++R++++  +++K   ++    ++R LS   SF  +L++ +   ++ I  +
Sbjct: 80  ESVTQLTTDDLRSYLANYQSEKDCSKANLDNIRRILS---SFFAWLEQEEYIIKNPIRRI 136

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           + +K   ++     ++    + DN            + R+ AI+ LL   G+R+ E + L
Sbjct: 137 KKIKTEQNVKETYTDEHLEIMRDNCE----------NLRDLAIIDLLASTGMRVGELVQL 186

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI-LEYYDLCPFDLNLNIQLPLFRGIRG 235
              +I  +     + GKG K R  P+    R  I L  Y     +   +    LF  + G
Sbjct: 187 NRSDIDFENRECVVFGKGKKER--PVYFDARTKIHLRNY----LNDRKDSHPALFVTLVG 240

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLS---TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           K    G+    IR   R LG  LS      H  R + AT  +  G  +  +Q +LGH ++
Sbjct: 241 KVQRLGIAGVEIR--LRKLGDKLSIQKVHPHKFRRTLATKAIDKGMPIEQVQKLLGHSKI 298

Query: 293 STTQIYTNVNSKN 305
            TT  Y  VN  N
Sbjct: 299 DTTLAYAMVNQNN 311


>gi|94442298|dbj|BAE93648.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 3/98 (3%)

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           PS  K+ +  Y    F  N     P    ++   ++    Q+ I++      +     +H
Sbjct: 67  PSAAKSWMWQY---AFPSNQRCFAPDLGTMKRHHVHQTSVQKAIKRAVARCNINKRVGSH 123

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             RHSFAT LL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 124 AFRHSFATRLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|312880385|ref|ZP_07740185.1| integrase family protein [Aminomonas paucivorans DSM 12260]
 gi|310783676|gb|EFQ24074.1| integrase family protein [Aminomonas paucivorans DSM 12260]
          Length = 309

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 3/158 (1%)

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVR 207
           T ++  R+ A +  L   G R +EA  L P+++   Q    ++ +  K R    +  S  
Sbjct: 126 TTYVGLRDKAAVLFLIDTGARPNEAWQLRPEDVDLVQGIALLRAETTKTRTPRTVFFSKP 185

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
            A L    L          +P+F    G P+    F   +R +    GL L  T ++LRH
Sbjct: 186 TAKLLNTLLGNRPDWWGPDVPIFAASTGSPMTSTEFGHRLRPVTARFGLNL--TVYSLRH 243

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            FAT+ L  GG    +Q ILGH  ++ T  Y N+N ++
Sbjct: 244 IFATNFLRGGGSALELQRILGHSNMTMTTRYANLNRED 281


>gi|229142394|ref|ZP_04270908.1| Phage integrase [Bacillus cereus BDRD-ST26]
 gi|228641059|gb|EEK97376.1| Phage integrase [Bacillus cereus BDRD-ST26]
          Length = 253

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 100/239 (41%), Gaps = 34/239 (14%)

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTL 137
           ++K    +L+R  + ++ FLKY+      ++  S+ L   ++KK   + R L  ++    
Sbjct: 9   SKKYAATTLRRKKTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLFPEEV--- 65

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGK 193
             N +L T  +T +      ++ +LL   GLRI E  +    ++    S     LR+ GK
Sbjct: 66  --NEILDTLKKTNFF---MYSLFFLLTTTGLRIEEVANAKWADLAFHPSLNVYLLRVVGK 120

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPF--------DLNLNIQLPLFRGIRGKPLNPGVFQR 245
           G+K R V +   V        DLC          +L+ +          G         +
Sbjct: 121 GNKTREVRIFEDVLN------DLCRLRQLRKQTSELDASSSSAFLPKADGSHYRADYLSK 174

Query: 246 YIRQLRRYLGLPL------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           Y+ +      LP         T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y
Sbjct: 175 YVAEKIEETNLPFLRYRKDRITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERY 233


>gi|325965567|ref|YP_004243471.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323471654|gb|ADX75337.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 131

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 41/75 (54%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           L+   RG  ++ G F       R  +GLP     H LRHS+ THL+  G D   +Q+ +G
Sbjct: 34  LWPSERGARMSLGSFGDAFAAARDAVGLPQELGLHCLRHSYVTHLIEAGYDAAFVQTQVG 93

Query: 289 HFRLSTTQIYTNVNS 303
           H   STT +YT+V+S
Sbjct: 94  HSYASTTGLYTSVSS 108


>gi|295680709|ref|YP_003609283.1| integrase family protein [Burkholderia sp. CCGE1002]
 gi|295440604|gb|ADG19772.1| integrase family protein [Burkholderia sp. CCGE1002]
          Length = 568

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 130/328 (39%), Gaps = 60/328 (18%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +ERG  LS LT +    D   +  FL   +     +  +R  +  + R F        + 
Sbjct: 257 VERGRALSSLTTE----DAIAYRTFLRHPSPHARWVGPVRPRTSPDWRPF-----NGSLS 307

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            RS+  +LS + +  ++L +++    +    ++  + S +    L+   A T  +  L+ 
Sbjct: 308 ARSVAHALSILGALFRWLIEQRYVLANPFAGVKVREASGA--NVLDTSHAFTEGEWALVR 365

Query: 145 TSHET-----KWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDD---QSTLRIQGK 193
           T  +       W       + +LL   Y  GLR SE +  T  +I  D      LR+ GK
Sbjct: 366 TIADGLEWSYGWSAPAAHRLRFLLDFGYATGLRASELVGATLGHIETDARGDHWLRVTGK 425

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP------------- 240
           G K+  V L P    A+  Y            +LP+   +R +P  P             
Sbjct: 426 GRKLARVALPPLAWDALAHYL--------AERELPIA-PVRWRPETPVIGSLEADSESTI 476

Query: 241 ------GVFQRYIRQLRRYLGL---PLS-----TTAHTLRHSFATHLLSNGGDLRSIQSI 286
                 GV +R+     + +     PL+      + H +RH+ ATH L  G +L +++  
Sbjct: 477 SSVRLWGVLRRFFLVAAKSIEADHPPLAEKLRCASPHWMRHTHATHALGRGAELTTVRDN 536

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           L H  +STT IY + +       M +++
Sbjct: 537 LRHASVSTTSIYLHSDEVKRARQMSDVF 564


>gi|271965097|ref|YP_003339293.1| phage integrase family protein [Streptosporangium roseum DSM 43021]
 gi|270508272|gb|ACZ86550.1| phage integrase family protein [Streptosporangium roseum DSM 43021]
          Length = 309

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 9/155 (5%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLP-SVRKA 209
           AR+ AI  LL+  G+RI+E ++L   ++       ++    GKG+  R +PLL  + R +
Sbjct: 137 ARDRAIGRLLFYSGVRIAELVALDDNDVPLSARKGKVIVRSGKGETSREIPLLDGTARAS 196

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-----PLSTTAHT 264
           + E+               L    RG  L+     + + +L     +      L+ +AH 
Sbjct: 197 VTEWRTERASWPGATDNPALLLNRRGGRLSTRAVDQLVDELAADADILDEAGALALSAHI 256

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           LRH+ AT+LL  G D+  +  +LGH RL TT+ YT
Sbjct: 257 LRHTLATNLLRAGVDIVVVAELLGHARLDTTRRYT 291


>gi|29293005|gb|AAO73845.1|AF335469_2 FotT [Escherichia coli]
          Length = 191

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 4/178 (2%)

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           + +++ LT  +  L+ T  +      RN  +LYL +  G R+SE  +L  +++     +L
Sbjct: 1   MTKRKYLTQSEVELMLTEAKHGQFSERNYCLLYLSFIHGFRVSEVCNLRLEDVCLRDKSL 60

Query: 189 RIQGKGDKIRIV-PLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRY 246
            I+   +    + PLL    K +  +  LC  D +N +    LF   +G  L+     + 
Sbjct: 61  NIRRMKNGFSTIHPLLSDEVKVLKAW--LCVRDKMNGSESEWLFVSRQGGALSRQRVWQM 118

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           I+ L +  G+ +++  H LRH+    L   G D R IQ  LGH  +  T  YT  N++
Sbjct: 119 IQNLGKKAGVKVNSHPHMLRHACGYALADRGVDTRLIQDYLGHRNIRHTVCYTASNAE 176


>gi|281426313|ref|ZP_06257226.1| integrase [Prevotella oris F0302]
 gi|281399555|gb|EFB30386.1| integrase [Prevotella oris F0302]
          Length = 406

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 142/318 (44%), Gaps = 51/318 (16%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + + I+R L    L++Y+      L  L  Y ++K  +  I  LS  + ++FI       
Sbjct: 123 ERIGIDRALKTFKLRTYQ------LSLLREYVQKKHRVSDI-PLSQLD-KSFIEGFEYYL 174

Query: 83  IGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMR-----NLKKSNSLPRALNEKQALT 136
             DR LKRS   I S L  L+   ++  +  IL+       + ++    PR++ + +   
Sbjct: 175 TIDRKLKRS--SISSALSTLQIIVRMAVKKGILDFYPFFGYSYERPKGEPRSITQDELQR 232

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKG 194
           ++D        E +W + R    L++ + C  GL IS+  +L  +NI+ ++  + I+G+ 
Sbjct: 233 IID-------LEIEWENYRIVRDLFI-FSCFSGLAISDVRNLREENIVLEEGEICIKGRR 284

Query: 195 DKIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL----NPGVFQRYI 247
            K +    V +LP    AI+  Y                RGIR   +       +    +
Sbjct: 285 MKTKTPYRVQVLPPAL-AIMNRY----------------RGIRAGFIFDVPTEDIIHNGM 327

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
             ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQIY  V+S+  
Sbjct: 328 HHIQRNIGMESPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLQTTQIYAAVSSERI 387

Query: 307 GDWMMEIYDQTHPSITQK 324
              M ++  +   + T K
Sbjct: 388 HRDMQKVQQRIQDTFTLK 405


>gi|313105646|ref|ZP_07791910.1| putative bacteriophage integrase [Pseudomonas aeruginosa 39016]
 gi|310878412|gb|EFQ37006.1| putative bacteriophage integrase [Pseudomonas aeruginosa 39016]
          Length = 328

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 98/240 (40%), Gaps = 39/240 (16%)

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSL 125
           SY  +R    KR  + I  ++L   L  I++    LK   +I  ++ +  ++ LK     
Sbjct: 104 SYASLR---RKRLEEGISGKTLNNELGYIRAVFNELKDLGQIDYDNPLAGVKLLKLQEGE 160

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
              L  +Q   L+D++        +  +     +  L    G R SEA  L  Q +  + 
Sbjct: 161 LSWLTTEQIGELLDSI------RNRCDNPHTELVTLLCLATGARWSEAEKLPAQRLQGNV 214

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            T     K  K+R VP+   +   +  ++                      P++ G F  
Sbjct: 215 VTY-AGTKSGKVRHVPIPAELADRVRAHW----------------------PMH-GPFTS 250

Query: 246 YIRQLRRYLG-----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            I   RR L      LP    +H LRH+FA+H + NGG++ ++Q ILGH  L+ T  Y +
Sbjct: 251 CITSFRRALERTTIQLPQGQASHALRHTFASHFMMNGGNILTLQKILGHSTLTMTMRYAH 310


>gi|299141756|ref|ZP_07034891.1| integrase [Prevotella oris C735]
 gi|298576607|gb|EFI48478.1| integrase [Prevotella oris C735]
          Length = 406

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 140/323 (43%), Gaps = 61/323 (18%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEIRAFISKRRT 80
           + + I+R L    L++Y+      L  L  Y ++K  +  I   QL  T I  F      
Sbjct: 123 ERIGIDRALKTFKLRTYQ------LSLLREYVQKKHKVSDIPLSQLDKTFIEGF----EY 172

Query: 81  QKIGDRSLKRS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
               DR LKRS     LS +++ ++   K+ +      L   + ++    PR++ +++  
Sbjct: 173 YLTIDRRLKRSSISSALSTLQTIVRMAVKKGVLDFYPFLGY-SYERPKGEPRSITQEELQ 231

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGK 193
            ++D        E +W + R    L++ + C  GL IS+  +L  +NI+ ++  L I+G+
Sbjct: 232 RIIDL-------EIEWENYRIVRDLFV-FSCFSGLAISDVRNLREENIVLEEGELCIKGR 283

Query: 194 GDKIRI---VPLLPSVRKAILEY--------YDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
             K +    V +LP     I  Y        +D+   D+ LN                  
Sbjct: 284 RMKTKTPYRVQVLPPAWAIIERYRGKRAGFVFDVPTTDIILN------------------ 325

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               +  ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQ+Y  V
Sbjct: 326 ---GMHYIQRNIGMESPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAV 382

Query: 302 NSKNGGDWMMEIYDQTHPSITQK 324
           +S+     M ++  +   + T K
Sbjct: 383 SSERIHRDMQKVQQRIQDTFTLK 405


>gi|224025008|ref|ZP_03643374.1| hypothetical protein BACCOPRO_01742 [Bacteroides coprophilus DSM
           18228]
 gi|224018244|gb|EEF76242.1| hypothetical protein BACCOPRO_01742 [Bacteroides coprophilus DSM
           18228]
          Length = 389

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 113/278 (40%), Gaps = 36/278 (12%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQ---LSYTEIRAFISKRRTQKIGDRSLKRSLSGIK--SF 98
           R  L +L  Y +E    + I     + + E    + K   ++ G R  + +  G+   S 
Sbjct: 120 RSCLRYLEIYCDENTLFRDITPDFIIGFKEFLENVEKDTHKRTGPRRERDTFQGLSQNSK 179

Query: 99  LKYLKKRKITT----ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + Y  K +       E  I+++  L+       A  +++ LTL + V    S   ++   
Sbjct: 180 VSYFNKLRACINKAYEERIISINPLRGIEGFKAAEVKREYLTL-EEVKKLASTPCRYPVL 238

Query: 155 RNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           + +     L+ C  GLR S+   LT   I         Q  G+  RIV      +   LE
Sbjct: 239 KRA----FLFSCLTGLRKSDIQKLTWSEI---------QKFGNFTRIV--FNQKKTGGLE 283

Query: 213 YYDLCP-----FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           Y D+ P        + N + P+F G           QR+        G+  + T H  RH
Sbjct: 284 YLDITPQAEKYLGEHKNPKEPVFSGFTYGAWTSLELQRWSMNA----GIQKNLTFHCGRH 339

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +FA  +L  G D+ ++  +LGH  LSTTQIY  V  KN
Sbjct: 340 TFAVLMLDLGADIYTVSKLLGHRELSTTQIYAKVLDKN 377


>gi|307243971|ref|ZP_07526092.1| phage integrase, N-terminal SAM domain protein [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492621|gb|EFM64653.1| phage integrase, N-terminal SAM domain protein [Peptostreptococcus
           stomatis DSM 17678]
          Length = 327

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 112/251 (44%), Gaps = 29/251 (11%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDR----SLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
           ++Q+   +IR ++++ +  K   R    +++R LS   SF  +L+      +S +  +  
Sbjct: 88  VKQIVTDDIRTYLTEYQNSKHSSRVTIDNIRRILS---SFFSWLEDEDYILKSPVRRIHK 144

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           +K   S+    ++ +AL L+ +            + R+ A++ +    G+R+ E + L  
Sbjct: 145 VKTGTSVKETYSD-EALELMRD---------SCTELRDLAMIDMFASTGMRVGEMVLLNR 194

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIR 234
           ++I  ++    + GKGDK RIV      +  +  Y     D  P  L +++Q P  R   
Sbjct: 195 EDINFNERECVVFGKGDKERIVYFDARTKIHLQNYLQSRKDNNP-ALFVSLQSPHNR--- 250

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              +  G  +  +R L   LGL +    H  R + AT  +  G  +  +Q +LGH R+ T
Sbjct: 251 ---MKIGGIEVRLRNLGNRLGL-VKVHPHKFRRTLATVAIDKGMPIEQVQQLLGHRRIDT 306

Query: 295 TQIYTNVNSKN 305
           T  Y  V   N
Sbjct: 307 TLQYAMVKQSN 317


>gi|302035678|ref|YP_003796000.1| phage integrase [Candidatus Nitrospira defluvii]
 gi|300603742|emb|CBK40074.1| Phage integrase [Candidatus Nitrospira defluvii]
          Length = 373

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 113/254 (44%), Gaps = 24/254 (9%)

Query: 49  FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT 108
           F AF+ +     +T+ +++   I  + S+R    +   S+ R L+ ++      K+    
Sbjct: 88  FRAFFGD-----RTLAEITPKLIVEYKSRRSATGVKPASINRELTCLRKAFSLAKREWEW 142

Query: 109 TESNILNMRNLKK-SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
              N ++  +L+K +    R L E +   L+D           W+      +++ L+  G
Sbjct: 143 CRDNPVSRVSLEKGATKRDRWLMEDEEARLLDAC-------PSWL---RELVVFALHS-G 191

Query: 168 LRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           +R+ E LSLT   + +  ++    + K ++ R VPL  +V   + E   +      L   
Sbjct: 192 MRLGEILSLTWNGVDLFRRTATVFESKNEERRTVPLNQTVMALLTEKAKVRHIKTAL--- 248

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
             +F  + G  L+P   +R +R      G+ ++   H LRH+FAT L+  G DL  +Q +
Sbjct: 249 --VFPSLAGTRLDPNHLRRALRPAMAKAGI-VNCHFHDLRHTFATRLVQAGVDLYKVQRL 305

Query: 287 LGHFRLSTTQIYTN 300
           LGH     TQ Y +
Sbjct: 306 LGHKSPLMTQRYAH 319


>gi|291516261|emb|CBK69877.1| Site-specific recombinase XerD [Bifidobacterium longum subsp.
           longum F8]
          Length = 319

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 125/292 (42%), Gaps = 37/292 (12%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK--- 77
           +L   E+E G S  T+  YE   +     LA         +   +++  ++R ++++   
Sbjct: 48  FLTAKEVE-GCSPKTIAYYESTLQHMTQALA---------KPCTRINSDDLREYLNRYEN 97

Query: 78  -RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            R   K+   +++R +S   SF  +L+      +S +  +  +K +      L+++   T
Sbjct: 98  ERHAGKVTIDNIRRIMS---SFFAWLEDEDYIVKSPVRRIHRVKTAVMAKEVLSDENLET 154

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L D          +    R+ AI+ +L   G+R+ E + L   ++   +    + GKG+K
Sbjct: 155 LRD----------RCGTLRDLAIVDILASTGMRVGELVGLNIADVNLQERECLVTGKGNK 204

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKP--LNPGVFQRYIRQLRRY 253
            R  P+    R  +     L  +  + N   P LF  + G    ++ G  +  +RQL + 
Sbjct: 205 QR--PVYFDARTKL----HLTAYLQSRNDSNPALFVALNGDGDRISIGGIESRLRQLGKD 258

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            G+      H  R + ATH +  G  +  +Q +LGH R+ TT  Y  VN  N
Sbjct: 259 AGIH-RVHPHKFRRTLATHAIDKGMPIEQVQKLLGHARIDTTMHYAMVNQNN 309


>gi|269126617|ref|YP_003299987.1| integrase family protein [Thermomonospora curvata DSM 43183]
 gi|268311575|gb|ACY97949.1| integrase family protein [Thermomonospora curvata DSM 43183]
          Length = 353

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 76/159 (47%), Gaps = 21/159 (13%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMD-----DQSTLRIQGKGDKIRIVPLLPSVRKA 209
           R+  ++ LL   G R+SE   LT  N+ D      +   RI GKG + R VPL  +V + 
Sbjct: 180 RDGLVVLLLATVGPRVSE---LTGANVEDFFVNDGRWYWRIFGKGGRTRDVPLPEAVARV 236

Query: 210 ILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL-------RRYLGLPLSTT 261
           +  Y +     L+  ++   L    RG+ L  G  Q  I ++       RR      + T
Sbjct: 237 LQAYLERGRPLLDRGVEPKALLLSWRGRRLARGDVQAVIDRVLARVEPSRRR-----AVT 291

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            H LRH+ ATHLL+   D+ +++ +LGH  L+T   Y +
Sbjct: 292 PHGLRHTTATHLLAAATDMDAVRRVLGHADLATLSRYRD 330


>gi|312887835|ref|ZP_07747422.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311299654|gb|EFQ76736.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 410

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 74/151 (49%), Gaps = 24/151 (15%)

Query: 162 LLYGC--GLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRI-VPLLPSVRKAILEYYD 215
            ++ C  GL   + ++LTP +I+   D +  +R   +   I + VPLLP     + +Y D
Sbjct: 252 FVFCCYTGLSYVDMINLTPGHIIAGSDGERWIRTCREKTLIPVNVPLLPQALTILDKYKD 311

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGV----FQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
                   NI     R +    + P V       Y++++    G+  + T H  RH+FAT
Sbjct: 312 --------NI-----RSLSNGRVFPTVSNQKVNSYLKEIADLCGITKNVTFHIARHTFAT 358

Query: 272 HL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            + LSNG  + ++  ILGH +++TTQIY  V
Sbjct: 359 TVTLSNGVPIETVSKILGHTKITTTQIYAKV 389


>gi|309777226|ref|ZP_07672189.1| site-specific recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915096|gb|EFP60873.1| site-specific recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 350

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 2/133 (1%)

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K  + R VP+   +   +  Y    P ++  N +  +F   RGKPL P     + ++L +
Sbjct: 218 KNKRQRFVPITKGLMDDLKTYIATMPEEMRNNPEQYVFINQRGKPLEPKRLLCHFKELLK 277

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDWMM 311
             GL      H LRH+FAT  L  G D++ +  +LGH  +  T  +YT+V ++   + M 
Sbjct: 278 EAGLQ-DIKFHNLRHTFATRCLECGIDMKIVSKVLGHSTIQITADLYTHVTNRAMQNAMS 336

Query: 312 EIYDQTHPSITQK 324
           ++  +   +  QK
Sbjct: 337 KLIKENWNNAYQK 349


>gi|281178375|dbj|BAI54705.1| phage integrase [Escherichia coli SE15]
          Length = 314

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 15/178 (8%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           RAL  ++   L+     H     +    R+ AI+ +L G GLR  E + L  ++  +   
Sbjct: 128 RALGRQEIRVLIQAAKQHPQSVRR---CRDVAIVLMLCGTGLRAGELVKLERRDYDNGIL 184

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GK----PLNP 240
           T+R QGKG K R + +  +V KAI  +  +   + +      LFR I+  GK    PL  
Sbjct: 185 TVR-QGKGRKYREIHVADAVDKAIRAWLKVGADEADS----ALFRRIQRSGKVASQPLTT 239

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                 + +L++  G+    T H +R +F T LL  G D+ +++ + GH  +STT  Y
Sbjct: 240 TGLTGILAELQQTAGIA-RFTPHDMRRTFITRLLEQGVDINTVRQLAGHSDISTTTRY 296


>gi|228988910|ref|ZP_04148959.1| Integrase-recombinase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228770824|gb|EEM19340.1| Integrase-recombinase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 278

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 68/171 (39%), Gaps = 10/171 (5%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTL--RIQGKGDKIRIVPLLPSVRKAILEY 213
           N  I+ LL   GLRI E  +    ++   +  L  R+ GKGDK R   + P + + I EY
Sbjct: 106 NYMIILLLVSTGLRIQEVANARMGDLFRAEGKLWLRVIGKGDKPREAYISPHLFECISEY 165

Query: 214 YDLCPFDLNLN--IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTL 265
                    LN     PL      +  N       +  +     +P         TAHT 
Sbjct: 166 RSRKGLKTQLNRLDNSPLIVSNHLRKFNSTYLSNKVTSILSQARIPCVEQRENPITAHTF 225

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           RH FA     N  +L  IQ  LGH   +TT+IY   + K   +  +   DQ
Sbjct: 226 RHGFAIMAAENDVELLRIQQTLGHASANTTKIYLEKHMKRKHNAALSFADQ 276


>gi|307149750|ref|YP_003890793.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306986550|gb|ADN18428.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 192

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 27/164 (16%)

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL---RIQGK--------GDKIRI 199
           W   RN+ ++ +LY  GLR +EA  +   ++   + T+   R++G         GD++R 
Sbjct: 37  WYAYRNATLILMLYRHGLRRTEAAHIRWSDVDLAEGTIYIRRVKGSRSGRHPIGGDEMRA 96

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +       K +   Y   PF         +F G R  PL        + Q     G   +
Sbjct: 97  L-------KKLRRDYAPSPF---------VFTGNRRTPLTERTISHIVHQAGILAGFEFT 140

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             AH LRH+   +L + G D R IQ  LGH  +  T  YT ++S
Sbjct: 141 VHAHLLRHACGYYLANKGVDTRIIQDYLGHANIQNTVRYTQLSS 184


>gi|300742464|ref|ZP_07072485.1| phage integrase family protein [Rothia dentocariosa M567]
 gi|300381649|gb|EFJ78211.1| phage integrase family protein [Rothia dentocariosa M567]
          Length = 225

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 89/217 (41%), Gaps = 36/217 (16%)

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           K +L  I  F +YL    I+TE+   +  +L  S   PR  +     +++   L  T+  
Sbjct: 23  KSALQSIHLFFRYL----ISTETREDDPTHLIPSIPQPRYHSRAIPSSVITQALRRTT-- 76

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP----LLP 204
                     ++ L    GLR SE  +L  QN  D    + I GKG   R +P    LLP
Sbjct: 77  ----SVEEEFMILLGAYAGLRRSEIAALHTQNYADKW--ISITGKGGHTRHIPAHALLLP 130

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            +      YY               F G R             +++ R LG     T H 
Sbjct: 131 YLESKSTGYYFAG-----------RFTGHRSA-------DNIAKKISRNLGQ--DYTPHQ 170

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LRH FAT + +   +LR++Q +LGH  +STTQ Y  V
Sbjct: 171 LRHWFATTVYAESHNLRAVQELLGHADISTTQRYIGV 207


>gi|225378419|ref|ZP_03755640.1| hypothetical protein ROSEINA2194_04087 [Roseburia inulinivorans DSM
           16841]
 gi|225209734|gb|EEG92088.1| hypothetical protein ROSEINA2194_04087 [Roseburia inulinivorans DSM
           16841]
          Length = 328

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 103/232 (44%), Gaps = 23/232 (9%)

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           ++++ K+   +++R  S   SF  +L+      +S +  +  +K ++++     ++Q  +
Sbjct: 107 EKQSSKVTIDNIRRIFS---SFFAWLEDEDYIIKSPVRRIHRIKAASTIKETYTDEQLES 163

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           + DN            + R+ A++ +L   G+R+ E + L   +I  D+    + GKGDK
Sbjct: 164 MRDNC----------DNPRDLALIDILASTGMRVGELVLLNRDDISFDERECIVFGKGDK 213

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP---GVFQRYIRQLRRY 253
            R+V      +  +  Y      D  L+    LF  ++  P N    G  +  +R++ + 
Sbjct: 214 ERMVYFDARTKIHLQNY-----LDSRLDGNEALFVSLKA-PYNRMKIGGIELRLREIGKK 267

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           L +      H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V   N
Sbjct: 268 LNIE-KVHPHKFRRTLATVAIDKGMPIEQLQKLLGHQRIDTTLQYAMVKQSN 318


>gi|16766051|ref|NP_461666.1| phage tail-like protein [Enterobacteria phage Fels-2]
 gi|169936064|ref|YP_001718763.1| P2 Int-like protein [Enterobacteria phage Fels-2]
 gi|197250527|ref|YP_002147666.1| phage integrase [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|200388896|ref|ZP_03215508.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|16421285|gb|AAL21625.1| Fels-2 prophage protein [Enterobacteria phage Fels-2]
 gi|197214230|gb|ACH51627.1| phage integrase [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|199605994|gb|EDZ04539.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|312913759|dbj|BAJ37733.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321223527|gb|EFX48592.1| Phage integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
          Length = 341

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 34/156 (21%)

Query: 153 DARNSAILYLLYGC---GLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSV 206
           D+++ ++L +   C   G R SEA +L    +    S  RI   + KG K R VP+    
Sbjct: 190 DSQSPSLLMIAKVCLATGARWSEAENLQGHQL----SKYRITYTKTKGKKNRTVPI---- 241

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG--VFQRYIRQLRRYLGLPLSTTAHT 264
                + YD  P +             RGK   P    F+R ++  R  + LP     H 
Sbjct: 242 ---SQDLYDELPKN-------------RGKLFTPCRKAFERAVK--RAGIELPEGQCTHV 283

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           LRH+FA+H + NGG++  ++ ILGH  +  T +Y +
Sbjct: 284 LRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAH 319


>gi|331685896|ref|ZP_08386473.1| resolvase (Protein D) [Escherichia coli H299]
 gi|331076849|gb|EGI48070.1| resolvase (Protein D) [Escherichia coli H299]
          Length = 256

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 97/226 (42%), Gaps = 52/226 (23%)

Query: 121 KSNSLPRALNEKQALTLVDNVLLHT-------SHETKWI-----DARNSAILYLLYGCGL 168
           +S  LP A++   AL L    ++H        + E   +     D R   +L  L+  G 
Sbjct: 10  QSAQLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPDLRRKMLLATLWNTGA 69

Query: 169 RISEAL-------SLTPQNIMDDQSTL------------RIQGKGDKIRIVPLLPSVRKA 209
           RI+EAL       SLTP       +TL            R+       R+VPL  S   +
Sbjct: 70  RINEALALTRGDFSLTPPYPFVQLATLKQRTEKAARTAGRMPAGQQTHRLVPLSDSWYVS 129

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG------------ 255
            L+        +   +++P+ R  R  G+     +++   R +R ++G            
Sbjct: 130 QLQ-------TMVATLKIPMERRNRRTGRTEKARIWEVTDRTVRTWIGEAVAAAAADGVT 182

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 183 FSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 228


>gi|330834471|ref|YP_004409199.1| phage integrase family protein [Metallosphaera cuprina Ar-4]
 gi|329566610|gb|AEB94715.1| phage integrase family protein [Metallosphaera cuprina Ar-4]
          Length = 284

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 136/291 (46%), Gaps = 45/291 (15%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++Q+L++  G  + T++ Y      FL F+     E  T   I  ++   +R   SK 
Sbjct: 16  QYFIQSLKLS-GAGQGTIKLYYSAINDFLKFVNKNPNEVTTQDVINWINVLSVREGRSKT 74

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +K    +++  +  ++ FL++L    +     +  +R  ++     RAL E +    +
Sbjct: 75  GDRKGRASTIRSYVIAVRRFLRWLG---VNVRPPVPRIRTPER-----RALRESE----I 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197
           +N++            R+ A++ LL   GLR SE LS+T  ++   + T+R+ + K  + 
Sbjct: 123 ENIISSCKR------LRDRALISLLLDTGLRSSELLSITVGDLDLQERTIRVRETKNGEE 176

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ-------RYIRQL 250
           RIV    + R A L         LN  I+    +  +G+  N  VF+       + +++L
Sbjct: 177 RIVFF--TARTASL---------LNQFIR----KTKKGE--NERVFEITYQALYKLVKRL 219

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            +  G+      H LRH+FAT+ +  G  L  +Q +LGH  + TTQIYT++
Sbjct: 220 GKKNGISW-LRPHILRHTFATNAIKKGAPLPVVQRLLGHKDIKTTQIYTHL 269


>gi|325955709|ref|YP_004293183.1| integrase/recombinase [Lactobacillus acidophilus 30SC]
 gi|325334689|gb|ADZ08242.1| integrase/recombinase [Lactobacillus acidophilus 30SC]
          Length = 284

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 110/275 (40%), Gaps = 30/275 (10%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +G ++ TL  YE   ++F  F       ++    + Q+  +++  F+ ++ +  +   ++
Sbjct: 20  QGRAEGTLLEYEMRLKEFAEFF------QLKALALDQVKKSDLTEFMEQKLSNCLKVSTI 73

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           +  LS  + F  +   +   +E  I            P+  N K+   L D  L    H 
Sbjct: 74  RGKLSTFRVFCLWAVNKNYLSEVII-------SPQDYPKNTNVKRIRRLSDENLTIFKHY 126

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPS 205
              +     A  YLL G G R++EA +L  +++     ++ I     K    R +P++ +
Sbjct: 127 IDTLQPNARAAFYLLIGSGCRVAEAANLKAEDVTLRGKSVYIDIRNAKWGSDRNIPIVDA 186

Query: 206 -VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
              K + +Y      D       PLFR      L+    Q Y     +  G+      H 
Sbjct: 187 DAAKIVWKYRTEVEVD-----NRPLFR------LSKRTLQNYATNFAKSTGINFY--CHL 233

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           LRH+FA  L   G  L ++Q +LGH  L  T  Y 
Sbjct: 234 LRHTFAGLLTEKGVPLTTVQYLLGHKSLGMTAHYA 268


>gi|260438910|ref|ZP_05792726.1| DNA integration/recombination/inversion protein [Butyrivibrio
           crossotus DSM 2876]
 gi|292808561|gb|EFF67766.1| DNA integration/recombination/inversion protein [Butyrivibrio
           crossotus DSM 2876]
          Length = 310

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 84/181 (46%), Gaps = 22/181 (12%)

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P+ LN+ +   L+++  LH   +  W        + L+   G+R SEAL+LTP++     
Sbjct: 116 PKFLNQFELHKLIED--LHLGPKVSW-----DWFILLVSKTGMRFSEALALTPKDFDFSH 168

Query: 186 STLRIQGKGDKIRIVPLLP-----SVRKAILEYYDLCPF---DLNLNIQLPLF--RGIRG 235
            TL I    D       LP     SVRK  L++  +  F     +L    P+F  R I  
Sbjct: 169 QTLSISKTWDYKGKGGFLPTKNQSSVRKIQLDWQTVMQFAELTKSLPNDEPIFIKRSIVY 228

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                G+ +R+ +      G+P+  + H LRH+ A+ LL  G  + S+   LGH  ++TT
Sbjct: 229 NSTLNGILERHCKNA----GIPI-ISIHGLRHTHASLLLFAGVSIASVARRLGHASMTTT 283

Query: 296 Q 296
           Q
Sbjct: 284 Q 284


>gi|251779512|ref|ZP_04822432.1| phage integrase family protein, putative [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243083827|gb|EES49717.1| phage integrase family protein, putative [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 292

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 115/286 (40%), Gaps = 31/286 (10%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +E G S  T+QSY  D   FL +L     E   +  +++   T  + ++     +     
Sbjct: 13  MEDGKSINTIQSYVGDVSAFLKYLGTMNVEFDGV--LKRFYITSYKNYLIDNSYEP---A 67

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++ + ++ I +F  +L  +    E    N+ +LKK        +E Q     DN L    
Sbjct: 68  TINKKVNSIGAFNNFLIWKGYMQE----NVIDLKKDRVKIAVGSEHQVEVYSDNQLERLQ 123

Query: 147 ---HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
                 K +  R+  I+ LL   G+R+SE   +  +NI    S ++I GKG K+R VP  
Sbjct: 124 FYIQNQKKVSIRDKMIIQLLMFTGVRVSELCDIKLKNIDFLLSQIKIIGKGGKVREVPAK 183

Query: 204 PSVRKAILEY--------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
                 I EY        Y    F         L  G RG+     V     +   R   
Sbjct: 184 FEAMDTIEEYISERNNNPYKDSEF---------LILGQRGEIQRDAVNTLLEKHTVRG-N 233

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTN 300
             +    HT RH+F T L++ G  + ++  + GH  + TT + Y N
Sbjct: 234 FEMKLKPHTFRHTFCTRLVAKGIPITTVSKLAGHSSIETTAKFYIN 279


>gi|331266258|ref|YP_004325888.1| integrase/recombinase, phage integrase family protein
           [Streptococcus oralis Uo5]
 gi|326682930|emb|CBZ00547.1| integrase/recombinase, phage integrase family protein
           [Streptococcus oralis Uo5]
          Length = 321

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 115/252 (45%), Gaps = 27/252 (10%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRS----LKRSLSGIKSFLKYLKKRKITTESNILNM 116
           +++ QL+  ++R++++  +++K   ++    ++R LS   SF  +L++ +   ++ I  +
Sbjct: 80  ESVTQLTTDDLRSYLANYQSEKDCSKANLDNIRRILS---SFFAWLEQEEYIIKNPIRRI 136

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           + +K   ++     ++    + DN            + R+ A++ LL   G+R+ E + L
Sbjct: 137 KKIKTEQTVKETYTDEHLEIMRDNCE----------NLRDLAMIDLLASTGMRVGELVQL 186

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI-LEYYDLCPFDLNLNIQLPLFRGIRG 235
              +I  +     + GKG K R  P+    R  I L  Y     +   +    LF  + G
Sbjct: 187 NRSDIDFENRECVVFGKGKKER--PVYFDARTKIHLRNY----LNDRKDSHPALFVTLLG 240

Query: 236 KPLNPGV--FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           K    G+   +  +R+L + LG+      H  R + AT  +  G  +  +Q +LGH ++ 
Sbjct: 241 KAQRLGIAGVEIRLRKLGQKLGIQ-KVHPHKFRRTLATKAIDKGMPIEQVQKLLGHSKID 299

Query: 294 TTQIYTNVNSKN 305
           TT  Y  VN  N
Sbjct: 300 TTLAYAMVNQSN 311


>gi|319901057|ref|YP_004160785.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319416088|gb|ADV43199.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 392

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 46/163 (28%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           A L+  Y  G+R S+ +SL P NI++    + +  K  K                     
Sbjct: 237 AFLFCCYA-GMRYSDFISLMPNNIVEINKEIWLVYKSVKT-------------------- 275

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-------------------GLPL 258
               N  ++LPL+    GK ++  + ++Y   ++ +                    G+  
Sbjct: 276 ----NTEVRLPLYLLFGGKGID--ILRKYWDNIQAFFHIKDNSNANKDLIILARLAGISK 329

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             + HT RH+ AT L+ NG ++ ++Q +LGH  + TTQIYTNV
Sbjct: 330 KISFHTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQIYTNV 372


>gi|314935704|ref|ZP_07843056.1| prophage L54a, integrase [Staphylococcus hominis subsp. hominis
           C80]
 gi|313656269|gb|EFS20009.1| prophage L54a, integrase [Staphylococcus hominis subsp. hominis
           C80]
          Length = 405

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 23/170 (13%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQG----------KGDK--------IRIVPLLPS--- 205
           GLRI E L+L P+NI      + I G          +G K         R + +      
Sbjct: 231 GLRIGELLALQPENIDFKNKKIEIDGTIAWITKDGVRGFKDTTKTEASYRTISITTRSCE 290

Query: 206 -VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            +RK +LE      +D N   +  +F   +G P+        I+   + +G+    + HT
Sbjct: 291 ILRKVMLENKKSAKWDSNFKERNFIFTNSKGSPMPLSSINANIKNAAKNVGIEKDISTHT 350

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           +RHS  + L   G  LR+I   +GH    TT QIY++V  +   D M+++
Sbjct: 351 MRHSHISLLSQLGVSLRAIMDRVGHKDYKTTLQIYSHVTEQMDKDMMIKL 400


>gi|237801947|ref|ZP_04590408.1| hypothetical protein POR16_24188 [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331024805|gb|EGI04861.1| hypothetical protein POR16_24188 [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 137

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 6/116 (5%)

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           L++ GKG K+R +PL P     I +Y +     L    ++PLF  +RGK    G+    I
Sbjct: 6   LKVHGKGGKVRYLPLHPIAAGRIHQYLENSEHHL-AERKVPLFMPLRGKLTGAGITANGI 64

Query: 248 RQL----RRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             +     +  G+ +     H LR + AT+ L +  D+  +Q+ LGH  +STT+IY
Sbjct: 65  YAVVTAYAKKAGIEVDGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 120


>gi|148984624|ref|ZP_01817892.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP3-BS71]
 gi|148997026|ref|ZP_01824680.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|149007165|ref|ZP_01830829.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP18-BS74]
 gi|149010476|ref|ZP_01831847.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP19-BS75]
 gi|168484778|ref|ZP_02709723.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC1873-00]
 gi|168575549|ref|ZP_02721485.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae MLV-016]
 gi|169832442|ref|YP_001694344.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae Hungary19A-6]
 gi|194397446|ref|YP_002037527.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae G54]
 gi|221231667|ref|YP_002510819.1| integrase/recombinase [Streptococcus pneumoniae ATCC 700669]
 gi|225854397|ref|YP_002735909.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae JJA]
 gi|225856554|ref|YP_002738065.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae P1031]
 gi|307067543|ref|YP_003876509.1| integrase [Streptococcus pneumoniae AP200]
 gi|147756726|gb|EDK63766.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|147761203|gb|EDK68170.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP18-BS74]
 gi|147764957|gb|EDK71886.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP19-BS75]
 gi|147923015|gb|EDK74130.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP3-BS71]
 gi|168994944|gb|ACA35556.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae Hungary19A-6]
 gi|172042056|gb|EDT50102.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC1873-00]
 gi|183578532|gb|EDT99060.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae MLV-016]
 gi|194357113|gb|ACF55561.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae G54]
 gi|220674127|emb|CAR68646.1| putative integrase/recombinase [Streptococcus pneumoniae ATCC
           700669]
 gi|225723828|gb|ACO19681.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae JJA]
 gi|225725861|gb|ACO21713.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae P1031]
 gi|301799879|emb|CBW32455.1| putative integrase/recombinase [Streptococcus pneumoniae OXC141]
 gi|306409080|gb|ADM84507.1| Integrase [Streptococcus pneumoniae AP200]
 gi|332201355|gb|EGJ15425.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus
           pneumoniae GA47368]
          Length = 321

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 114/252 (45%), Gaps = 27/252 (10%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRS----LKRSLSGIKSFLKYLKKRKITTESNILNM 116
           +++ QL+  ++R++++  +++K   ++    ++R LS   SF  +L++ +   ++ I  +
Sbjct: 80  ESVTQLTTDDLRSYLANYQSEKDCSKANLDNIRRILS---SFFAWLEQEEYIIKNPIRRI 136

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           + +K   ++     ++    + DN            + R+ AI+ LL   G+R+ E + L
Sbjct: 137 KKIKTEQNVKETYTDEHLEIMRDNCE----------NLRDLAIIDLLASTGMRVGELVQL 186

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI-LEYYDLCPFDLNLNIQLPLFRGIRG 235
              +I  +     + GKG K R  P+    R  I L  Y     +   +    LF  + G
Sbjct: 187 NRSDIDFENRECVVFGKGKKER--PVYFDARTKIHLRNY----LNDRKDSHPALFVTLVG 240

Query: 236 KPLNPGV--FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           K    G+   +  +R+L   LG+      H  R + AT  +  G  +  +Q +LGH ++ 
Sbjct: 241 KAQRLGIAGVEIRLRKLGDKLGIQ-KVHPHKFRRTLATKAIDKGMPIEQVQKLLGHSKID 299

Query: 294 TTQIYTNVNSKN 305
           TT  Y  VN  N
Sbjct: 300 TTLAYAMVNQNN 311


>gi|134287548|ref|YP_001109714.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134132198|gb|ABO59933.1| phage integrase family protein [Burkholderia vietnamiensis G4]
          Length = 701

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 76/203 (37%), Gaps = 58/203 (28%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--------LRIQGKGDKIRIVPLLPS 205
           AR   +L   Y  GLR +E       +I+   +         LR+ GKG K R VPL+P+
Sbjct: 484 ARLRFVLAFAYSTGLRRAELCGAFTDDIVQRYAGAELGTIHLLRVVGKGAKERFVPLVPA 543

Query: 206 VRKAILEYYD---------LCPFDLNLNIQLPLFRGI----------------------- 233
           V  A+ +Y            CP    L   L   R I                       
Sbjct: 544 VLDALGDYLVTRGFPRDPLACPLGTPLIPALLDNREIGRVRREAAASGADPDAAVAALTR 603

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPL---------------STTAHTLRHSFATHLLSNGG 278
           R +P++P    R  R ++R+                    + + H LRH+F +H L+NG 
Sbjct: 604 RDRPVHP---DRLYRAVKRFFATATEAAMREDSPHARAFSAASTHWLRHTFVSHALANGM 660

Query: 279 DLRSIQSILGHFRLSTTQIYTNV 301
            L S ++  GH  L TT IY   
Sbjct: 661 SLESARNFAGHDSLDTTSIYATA 683


>gi|332289031|ref|YP_004419883.1| site-specific tyrosine recombinase XerC [Gallibacterium anatis
           UMN179]
 gi|330431927|gb|AEC16986.1| site-specific tyrosine recombinase XerC [Gallibacterium anatis
           UMN179]
          Length = 310

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 86/185 (46%), Gaps = 29/185 (15%)

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P+ L++ +  TL+  + L+      W+       + L+   GLR SEAL++TP++    +
Sbjct: 113 PKYLSQYELQTLIHQLNLNEKLSFDWL-------ILLIAKTGLRFSEALAVTPKDFDFAR 165

Query: 186 STLRIQGKGDKIRIVPLLP-----SVRKAILEYYDL---------CPFDLNLNIQLPLFR 231
            TL I    D       LP     S+RK  L++  +         CP   N+ I LP + 
Sbjct: 166 QTLTINKTWDYKNEGGFLPTKNRSSIRKVQLDWQTIIQFAQLIRHCP--ENIPIFLPNYE 223

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
            +    +N  +  RY ++      +P+  T H LRH+ A+ LL  G  + S+   LGH  
Sbjct: 224 KVYNSTIN-DLIARYCKKA----AIPI-ITVHGLRHTHASLLLFAGVSIASVARRLGHAS 277

Query: 292 LSTTQ 296
           ++TTQ
Sbjct: 278 ITTTQ 282


>gi|322614413|gb|EFY11344.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322621522|gb|EFY18375.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322624383|gb|EFY21216.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322626580|gb|EFY23385.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322633558|gb|EFY30300.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322638399|gb|EFY35097.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322647302|gb|EFY43798.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322649302|gb|EFY45739.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
 gi|322655977|gb|EFY52277.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322661373|gb|EFY57598.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322662570|gb|EFY58778.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322666944|gb|EFY63119.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322671314|gb|EFY67437.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322677679|gb|EFY73742.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|322681494|gb|EFY77524.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322683894|gb|EFY79904.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323195464|gb|EFZ80642.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323197494|gb|EFZ82631.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323203015|gb|EFZ88047.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323205255|gb|EFZ90230.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323210594|gb|EFZ95478.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
 gi|323218124|gb|EGA02836.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323221609|gb|EGA06022.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323227630|gb|EGA11785.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323230888|gb|EGA15006.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323234760|gb|EGA18846.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323238800|gb|EGA22850.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323241499|gb|EGA25530.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323248355|gb|EGA32291.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323252880|gb|EGA36714.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323256999|gb|EGA40708.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323260527|gb|EGA44138.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323264415|gb|EGA47921.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323269549|gb|EGA53002.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
          Length = 339

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 24/153 (15%)

Query: 153 DARNSAILYLLYGC---GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           D+++ ++L +   C   G R SEA +L    +   + T   + KG K R VP+       
Sbjct: 190 DSQSPSLLMIAKVCLATGARWSEAENLQGHQLSKYRITY-TKTKGKKNRTVPI------- 241

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
                       +L  +LP  RG    P     F+R ++  R  + LP     H LRH+F
Sbjct: 242 ----------SQDLYAELPKNRGKLFTPCRK-AFERAVK--RAGIELPEGQCTHVLRHTF 288

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           A+H + NGG++  ++ ILGH  +  T +Y++ +
Sbjct: 289 ASHFMMNGGNILVLRDILGHSDIKMTMVYSHFS 321


>gi|261210225|ref|ZP_05924522.1| integrase [Vibrio sp. RC341]
 gi|260840765|gb|EEX67314.1| integrase [Vibrio sp. RC341]
          Length = 317

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 108/239 (45%), Gaps = 35/239 (14%)

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPR 127
           +E+ A   +RRT ++   ++ R  S +++    L +  + T  N L  +R  +++    R
Sbjct: 90  SEMFAKYRERRTLEVSLTTVNREHSYLRAVFNELDRLGVITYENPLTKIRQFREAEGELR 149

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC---GLRISEALSLTPQNIMDD 184
            L+  +   L++   + T          N ++++++  C   G R  EA +L P  I + 
Sbjct: 150 FLSHDEIARLLEQCKVST----------NKSLIHVVKICLATGARWGEAENLKPSQIANG 199

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAIL--EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           + T  +  K  K R VP+       IL  E  +L PF         +F G      +   
Sbjct: 200 KVTF-LNTKSKKNRTVPI-----NQILFNELEELEPFS-----NSRMFVG------SLAA 242

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           F+  +   R  + LP     H LRH+FA+H +  GG++  ++ +LGH  ++TT  Y ++
Sbjct: 243 FRTALS--RADIELPAGQNTHVLRHTFASHYVMGGGNIVKLRDVLGHKEITTTMRYAHL 299


>gi|291457408|ref|ZP_06596798.1| integrase/recombinase, phage integrase family [Bifidobacterium
           breve DSM 20213]
 gi|322691668|ref|YP_004221238.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|291381243|gb|EFE88761.1| integrase/recombinase, phage integrase family [Bifidobacterium
           breve DSM 20213]
 gi|320456524|dbj|BAJ67146.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 319

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 125/292 (42%), Gaps = 37/292 (12%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK--- 77
           +L   E+E G S  T+  YE   +     LA         +   +++  ++R ++++   
Sbjct: 48  FLTAKEVE-GCSPKTIAYYESTLQHMTQALA---------KPCTRINSDDLREYLNRYEN 97

Query: 78  -RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            R   K+   +++R +S   SF  +L+      +S +  +  +K +      L+++   T
Sbjct: 98  ERHAGKVTIDNIRRIMS---SFFAWLEDEDYIVKSPVRRIHRVKTAVMAKEVLSDENLET 154

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L D          +    R+ AI+ +L   G+R+ E + L   ++   +    + GKG+K
Sbjct: 155 LRD----------RCGTLRDLAIVDILASTGMRVGELVGLNIADVNLQERECLVTGKGNK 204

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKP--LNPGVFQRYIRQLRRY 253
            R  P+    R  +     L  +  + N   P LF  + G    ++ G  +  +RQL + 
Sbjct: 205 QR--PVYFDARTKL----HLTAYLQSRNDSNPALFVALNGDGDRISIGGIESRLRQLGKD 258

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            G+      H  R + ATH +  G  +  +Q +LGH R+ TT  Y  VN  N
Sbjct: 259 AGIH-RVHPHKFRRTLATHAIDKGMPIEQVQKLLGHARIDTTMHYVMVNQNN 309


>gi|237740506|ref|ZP_04570987.1| integrase/recombinase [Fusobacterium sp. 2_1_31]
 gi|229422523|gb|EEO37570.1| integrase/recombinase [Fusobacterium sp. 2_1_31]
          Length = 328

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 129/295 (43%), Gaps = 40/295 (13%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTI----RQLSYTEIRAFISKRRTQKIGDRS 87
           S+ T++ Y    + FL F+ +  E   +I  +    + +   ++ A+I         DR 
Sbjct: 33  SEKTVKDYMFHLKDFLHFV-YEGENDFSISEVIPLMQDIEKEDVEAYI----VHLFEDRK 87

Query: 88  LKRS-----LSGIKSFLKYLKKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLV 138
           LK++     LS +KS  K L+   +      + +    RN++  N L  ++++ + +   
Sbjct: 88  LKKTSVNTILSALKSLYKELESNGLKNPVKYIKLFKVNRNIE--NVLKVSIDDIRKII-- 143

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLR-IQGKGD 195
              L     E K+   RN  ILY L+  G+R  E L+L  ++ +  +D+   + +Q K  
Sbjct: 144 --GLYKIDSEKKY---RNITILYTLFYTGMRSKELLTLQFKHFLRREDEYFFKLVQTKSG 198

Query: 196 KIRIVPLLPSVRKAILEY-------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           K    P+  S+ K + EY       Y L   DL+ +            PL+       I+
Sbjct: 199 KDVYKPIHKSLVKKLEEYRSYLMNMYSLDSKDLDEHYIFATSVS-NNSPLSYRSLNVIIQ 257

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            + + +   +S   H +RH+ AT L  NG D+  I+  LGH     T++Y NV S
Sbjct: 258 DMGKLIEKDIS--PHNIRHAIATELSLNGADILEIRDFLGHSDTKVTEVYINVRS 310


>gi|16763108|ref|NP_458725.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|29144590|ref|NP_807932.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56414704|ref|YP_151779.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197363631|ref|YP_002143268.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|213426678|ref|ZP_03359428.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|213586423|ref|ZP_03368249.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
 gi|213855469|ref|ZP_03383709.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
 gi|25301805|pir||AI1039 phage integrase [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16505416|emb|CAD06766.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29140228|gb|AAO71792.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56128961|gb|AAV78467.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197095108|emb|CAR60654.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 341

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 71/153 (46%), Gaps = 28/153 (18%)

Query: 153 DARNSAILYLLYGC---GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           D+++ ++L +   C   G R SEA +L    +   + T   + KG K R VP+       
Sbjct: 190 DSQSPSLLMIAKICLATGARWSEAENLQGHQLSKYRITY-TKTKGKKNRTVPI------- 241

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG--VFQRYIRQLRRYLGLPLSTTAHTLRH 267
             E YD  P +             RGK   P    F+R ++  R  + LP     H LRH
Sbjct: 242 SQELYDELPKN-------------RGKLFTPCRKSFERAVK--RAGIELPEGQCTHVLRH 286

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +FA+H + NGG++  ++ ILGH  +  T +Y +
Sbjct: 287 TFASHFMMNGGNILVLRDILGHADIKMTMVYAH 319


>gi|257463634|ref|ZP_05628025.1| site-specific recombinase XerD [Fusobacterium sp. D12]
 gi|317061186|ref|ZP_07925671.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           D12]
 gi|313686862|gb|EFS23697.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           D12]
          Length = 207

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 80/164 (48%), Gaps = 18/164 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +Q ++ +LE++RGL + +L++ + D  QFL ++    E + T+  I+   ++        
Sbjct: 8   KQKYIHHLELQRGLRQNSLRAIQKDLEQFLHYIEDCQEGEFTVLAIKSYFFS-------- 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +K  + ++ R LS IK FL++LK+  I  E   L +  ++K         E+  +  
Sbjct: 60  -LQEKHAESTVHRKLSSIKVFLRFLKEENIVEEDFSLYLIKVRK---------EEDVILF 109

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
            +  +     ++   D R+ AI  LLY  G++  E LSL+   I
Sbjct: 110 FETSVWEKFRKSFEEDIRDRAIFELLYSTGMKPKEFLSLSYMQI 153


>gi|194429446|ref|ZP_03061969.1| integrase [Escherichia coli B171]
 gi|194432824|ref|ZP_03065108.1| integrase [Shigella dysenteriae 1012]
 gi|194412507|gb|EDX28806.1| integrase [Escherichia coli B171]
 gi|194418812|gb|EDX34897.1| integrase [Shigella dysenteriae 1012]
 gi|195183060|dbj|BAG66620.1| putative integrase [Escherichia coli O111:H-]
 gi|332090165|gb|EGI95264.1| integrase [Shigella dysenteriae 155-74]
          Length = 334

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 22/143 (15%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +  L    G R SEA  L  + I+ ++ T  ++ K  + R VP+  +V +AI        
Sbjct: 185 VALLCLSTGARWSEACKLRGEQIVHNRVTF-LETKNGRKRTVPISQAVCEAIKTRETGGL 243

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-GLPLSTTAHTLRHSFATHLLSNG 277
           F++                     ++ +   L+R    LP    AH LRH+FA+H + NG
Sbjct: 244 FEVK--------------------YREFCLALKRVKPDLPKGQAAHVLRHTFASHFVMNG 283

Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300
           G++ ++Q ILGH  +  T  Y +
Sbjct: 284 GNIIALQKILGHATIQQTMAYAH 306


>gi|300824703|ref|ZP_07104809.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
 gi|300522793|gb|EFK43862.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
          Length = 268

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 97/226 (42%), Gaps = 52/226 (23%)

Query: 121 KSNSLPRALNEKQALTLVDNVLLHT-------SHETKWI-----DARNSAILYLLYGCGL 168
           +S  LP A++   AL L    ++H        + E   +     D R   +L  L+  G 
Sbjct: 22  QSAQLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPDLRRKMLLATLWNTGA 81

Query: 169 RISEAL-------SLTPQNIMDDQSTL------------RIQGKGDKIRIVPLLPSVRKA 209
           RI+EAL       SLTP       +TL            R+       R+VPL  S   +
Sbjct: 82  RINEALALTRGDFSLTPPYPFVQLATLKQRTEKAARTAGRMPAGQQTHRLVPLSDSWYVS 141

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG------------ 255
            L+        +   +++P+ R  R  G+     +++   R +R ++G            
Sbjct: 142 QLQ-------TMVATLKIPMERRNRRTGRTEKARIWEVTDRTVRTWIGEAVAAAAADGVT 194

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 195 FSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240


>gi|218263862|ref|ZP_03477831.1| hypothetical protein PRABACTJOHN_03521 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222461|gb|EEC95111.1| hypothetical protein PRABACTJOHN_03521 [Parabacteroides johnsonii
           DSM 18315]
          Length = 386

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 118/282 (41%), Gaps = 44/282 (15%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQ---LSYTEIRAFISKRRTQKIGDRSLKRSLSGIK--SF 98
           R  L +L  Y +EK T + +     + + E    + K   +++G R  + +  G+   S 
Sbjct: 117 RSCLRYLEIYCDEKTTFRDVTPEFVMGFKEFLEHVEKDTHKRVGPRRERDTFQGLSQNSK 176

Query: 99  LKYLKKRKITT----ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + Y  K +       +  ++ +  L+       A  ++  LTL D V    +   ++   
Sbjct: 177 VSYFNKLRACINQAYDERVIPINPLRGIEGFKAAEVKRDYLTL-DEVRQLAATPCRYPIL 235

Query: 155 RNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           + +     L+ C  G+R S+   LT   +         Q  G+  RIV      +    E
Sbjct: 236 KRA----FLFSCLTGIRKSDIQKLTWGEV---------QKFGEYTRIV--FKQKKTGGQE 280

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR------QLRRY---LGLPLSTTAH 263
           Y D+ P       Q   + G RG P +  VF  +        +L+R+    G+  + T H
Sbjct: 281 YLDITP-------QAEKYLGERGNP-DDLVFTGFTYGAWTSLELQRWSLAAGMNKNLTFH 332

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             RH+FA  +L  G D+ ++  +LGH  L+TTQIY  V  KN
Sbjct: 333 CGRHTFAILMLDLGADIYTVSKLLGHKELATTQIYAKVLDKN 374


>gi|226329968|ref|ZP_03805486.1| hypothetical protein PROPEN_03881 [Proteus penneri ATCC 35198]
 gi|225200763|gb|EEG83117.1| hypothetical protein PROPEN_03881 [Proteus penneri ATCC 35198]
          Length = 168

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 19/149 (12%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           ++  N  +  L    G R  EAL L  ++++ ++       K +K RIVP+  +V   I 
Sbjct: 16  LEGDNLKVAVLCLSTGARWGEALKLKREHVIQNKVRFTYT-KTNKPRIVPISQAVADMIC 74

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
                               G+     +  +F+R I++++  + L  +T  H LRH+FAT
Sbjct: 75  TKKS----------------GLLFTETSYHMFRRAIKKVKPSMALGQAT--HALRHTFAT 116

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           H + NGG + ++Q ILGH  L  T  Y +
Sbjct: 117 HFMMNGGSIITLQRILGHTNLQQTLTYAH 145


>gi|189460548|ref|ZP_03009333.1| hypothetical protein BACCOP_01189 [Bacteroides coprocola DSM 17136]
 gi|189432792|gb|EDV01777.1| hypothetical protein BACCOP_01189 [Bacteroides coprocola DSM 17136]
          Length = 388

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 97/217 (44%), Gaps = 35/217 (16%)

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--G 167
           E  I+    L+      +A  E+  LTL + V    + + K+   +N+     ++ C  G
Sbjct: 187 EDRIIPHNPLRGIEGFKQAETERSYLTL-EEVKAMAAAQCKYPALKNA----FMFSCLTG 241

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           LR S+   L  + +         Q +GD  RI+      +    EY       L++N Q 
Sbjct: 242 LRKSDIEKLRWREV---------QQQGDFTRII--FKQKKTGGQEY-------LDINKQA 283

Query: 228 PLFRGIRGKPLNPGVFQRY------IRQLRRYL---GLPLSTTAHTLRHSFATHLLSNGG 278
             + G+R +P +  VF  +      I +LR +    G+    T H+ RH+FA  +L  G 
Sbjct: 284 VQYMGVRREP-DDRVFVGFKYSAYMIAELRMWANRAGITKDITFHSGRHTFAVLMLDLGA 342

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           ++ ++Q +LGH  LSTTQIY  +  K   + +  I D
Sbjct: 343 EIYTVQKLLGHKELSTTQIYAKILDKKKQEAVAMIPD 379


>gi|295090947|emb|CBK77054.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 327

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 116/253 (45%), Gaps = 29/253 (11%)

Query: 61  QTIRQLSYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           +T +Q++  ++R +++    +R + K+   +++R LS   SF  +L+      +S +  +
Sbjct: 86  KTAQQITTEDLRTYLTNYQIQRGSSKVTIDNIRRILS---SFFSWLEDEDFILKSPVRRI 142

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             +K +  +     ++    + DN            +AR+ AI+ LL   G+R+ E + L
Sbjct: 143 HKVKTAKVVKDTYTDEALELMRDNC----------TNARDLAIIDLLASSGMRVGEMVML 192

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRG 232
              +I  ++    + GKG+K R+V      +  +  Y     D  P  L ++++ P  R 
Sbjct: 193 NRDDIDFNERECVVIGKGNKERLVYFDARTKIHLQNYLNERTDANPA-LFVSLKAPNERL 251

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           + G     GV  R +R++ + L L      H  R + AT  +  G  +  +Q +LGH ++
Sbjct: 252 MIG-----GVETR-LREMGKRLNLQ-KVHPHKFRRTLATSAIDKGMPIEQVQQLLGHQKI 304

Query: 293 STTQIYTNVNSKN 305
            TT  Y  V  +N
Sbjct: 305 DTTMHYAMVKQQN 317


>gi|238760428|ref|ZP_04621566.1| Int [Yersinia aldovae ATCC 35236]
 gi|238701323|gb|EEP93902.1| Int [Yersinia aldovae ATCC 35236]
          Length = 284

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 102/242 (42%), Gaps = 30/242 (12%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           + + QL+  E+    S+R    I   ++ R L  +      L K        I       
Sbjct: 54  KVVSQLTKRELMEHRSQRLADGISAATINRDLYRLSGMFSALIK--------IEEFSGQN 105

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
             + LP    +   +T +D   ++        D R  A+L L    G R  E  +LT   
Sbjct: 106 PQHGLPPLAEKNPGMTFLDTEEINRLLAVLSGDERLIALLCL--STGGRWGEVSTLTAAQ 163

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           +++++ T  ++ K  K R +P+   +++           ++  N    LF+      ++ 
Sbjct: 164 VVNNRVTF-LETKNGKKRTIPISAELQE-----------EVKTNASGKLFK------VDY 205

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           G F   +R ++    LP     H LRH+FA+H + NGG++ ++Q ILGH  +  T  Y +
Sbjct: 206 GKFCETLRMVKP--DLPRGQATHVLRHTFASHFMMNGGNIIALQQILGHANIQQTMAYAH 263

Query: 301 VN 302
           ++
Sbjct: 264 LS 265


>gi|37955774|gb|AAP22612.1| IntI1 [Pseudomonas aeruginosa]
          Length = 319

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 74/167 (44%), Gaps = 37/167 (22%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207
           LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R         
Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198

Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                                  +A   +     F  + +   P    +R   +    FQ
Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           R  ++     G+    T HTLRHSFAT LL +G D+R++Q +L  FR
Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLVVFR 305


>gi|288926827|ref|ZP_06420735.1| integrase [Prevotella buccae D17]
 gi|288336399|gb|EFC74777.1| integrase [Prevotella buccae D17]
          Length = 407

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 14/147 (9%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            ++ C  GL   +  +LTP+++  MDD+  +  + +   +    LL  + K I+  Y   
Sbjct: 249 FIFSCFTGLSYIDVANLTPEHLVNMDDKQWIMTKRQKTNVESNILLLDIPKQIIAKYSNK 308

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            +         LF  +  + +N      Y++++    G+  + T H  RH+FAT  LS G
Sbjct: 309 TYR-----DSKLFPVLSNQKMNA-----YLKEIADICGIGKNLTFHMARHTFATMSLSKG 358

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSK 304
             + S+  +LGH  L TTQIY  + +K
Sbjct: 359 VPMESVSKMLGHTNLKTTQIYARITNK 385


>gi|255021753|ref|ZP_05293790.1| Site-specific recombinase XerD [Acidithiobacillus caldus ATCC
           51756]
 gi|254968809|gb|EET26334.1| Site-specific recombinase XerD [Acidithiobacillus caldus ATCC
           51756]
          Length = 307

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 78/159 (49%), Gaps = 10/159 (6%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           R    L+LL   GLR+SEALSL+   +    D   +R+ GKG+K R VP+ P++ + +LE
Sbjct: 149 RKRVFLHLLLFTGLRVSEALSLSLAQVRLEADPPVVRVIGKGNKEREVPISPTL-QVVLE 207

Query: 213 YY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSF 269
            Y      F  N +    LF    G P         + ++ R  G+   +   H LRH+F
Sbjct: 208 GYLERRQRFVRNGDW---LFSTAVGAPFTRTWAYTTVSEVIRGAGIQKPAYGPHVLRHTF 264

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGG 307
           AT  L  G     +++ LGH  L+ T ++Y +V +   G
Sbjct: 265 ATRQLRAGIAPAIVKAWLGHEDLAITFRVYEHVFAAPAG 303


>gi|327399861|ref|YP_004346892.1| site-specific recombinase, phage integrase family protein
           [Lactobacillus amylovorus GRL 1112]
 gi|327399877|ref|YP_004346908.1| site-specific recombinase, phage integrase family protein
           [Lactobacillus amylovorus GRL 1112]
 gi|327182531|gb|AEA32966.1| site-specific recombinase, phage integrase family protein
           [Lactobacillus amylovorus GRL 1112]
 gi|327182547|gb|AEA32982.1| site-specific recombinase, phage integrase family protein
           [Lactobacillus amylovorus GRL 1112]
          Length = 284

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 111/275 (40%), Gaps = 30/275 (10%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +G ++ TL  YE   ++F  F       ++    + Q+  +++  F+ ++ +  +   ++
Sbjct: 20  QGRAEGTLLEYEMRLKEFAEFF------QLKALALDQVKKSDLTEFMEQKLSNCLKVSTI 73

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           +  LS  + F  +   +   +E  I            P+  N K+   L D  L    H 
Sbjct: 74  RGKLSTFRVFCLWAVNKNYLSEVII-------SPQDYPKNTNVKRIRRLSDENLTIFKHY 126

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPS 205
              +     A  YLL G G R++EA +L  +++    +++ I     K    R +P++ +
Sbjct: 127 IDTLQPNARAAFYLLIGSGCRVAEAANLRAEDVTLRGNSVYIDIRNAKWGSDRNIPIVDA 186

Query: 206 -VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
              K + +Y      D       PLFR      L+    Q Y     +  G+      H 
Sbjct: 187 DAAKIVWKYRTEVEVD-----NRPLFR------LSKRTLQNYATNFAKSTGINFY--CHL 233

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           LRH+FA  L   G  L ++Q +LGH  L  T  Y 
Sbjct: 234 LRHTFAGLLTEKGVPLTTVQYLLGHKSLGMTAHYA 268


>gi|294505690|ref|YP_003569751.1| Tyrosine recombinase xerD [Salinibacter ruber M8]
 gi|294342129|emb|CBH22793.1| Tyrosine recombinase xerD [Salinibacter ruber M8]
          Length = 191

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 89/201 (44%), Gaps = 40/201 (19%)

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           + + + LP+ L E +      + LL   ++  +   R+   +  +   GLR SEA +L P
Sbjct: 1   MARPDKLPKILTEAET-----DRLLAQPNQRYFGPHRDYLYMRAMLKAGLRASEATALRP 55

Query: 179 QNI--MDDQSTLRIQGKGDKIRIV----PLLPSV------RKAILEYYD-LCPFDLNLNI 225
           ++I  M  +  +R +GKG K R +     LL  +      RKA     D L P   +  +
Sbjct: 56  EHIDLMSGKLMVR-EGKGAKDRTLWIGEELLEELQAWMDRRKATAPGADYLLPTSKSTQV 114

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYL-GLPLS----TTAHTLRHSFATHLLSNGGDL 280
                R                R ++RY  G  +      + HTLRH+FAT L    G +
Sbjct: 115 ATSHLR----------------RSVKRYAEGANIEEVGRVSPHTLRHTFATRLYQETGKI 158

Query: 281 RSIQSILGHFRLSTTQIYTNV 301
           R +Q  LGH  LSTT IYT+V
Sbjct: 159 RLVQKALGHSDLSTTMIYTHV 179


>gi|256838718|ref|ZP_05544228.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
 gi|256739637|gb|EEU52961.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
          Length = 406

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 81/170 (47%), Gaps = 17/170 (10%)

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI 199
           ++L      K ++      ++ ++  GL  S+   L+P++++ D++  L I+    K +I
Sbjct: 232 IILAKEFTIKRVEQVRDVFVFCIFT-GLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKI 290

Query: 200 ---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
              +P+LP     + +Y D+      L   LP+    R           Y++++    G+
Sbjct: 291 MCNIPVLPVAASILDKYKDVAECTGKL---LPVLSNQR--------MNSYLKEIADVCGI 339

Query: 257 PLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             + + HT RHS+AT + L+NG  + ++  +LGH   S T+ Y  V  +N
Sbjct: 340 HKNLSTHTARHSYATSICLANGVSMENVAKMLGHADTSVTKHYARVLDQN 389


>gi|304382759|ref|ZP_07365243.1| integrase [Prevotella marshii DSM 16973]
 gi|304336078|gb|EFM02324.1| integrase [Prevotella marshii DSM 16973]
          Length = 406

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 138/319 (43%), Gaps = 53/319 (16%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEIRAFISKRRT 80
           + + I+R L  L L++Y+      L  L  Y ++K  +  I   QL  T I  F      
Sbjct: 123 ERIGIDRALKTLKLRTYQ------LSLLCEYVQKKYKVSDIPLSQLDNTFIEGF----EY 172

Query: 81  QKIGDRSLKRSLSGI-----KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
               DR LKRS         ++ ++   K+ +      L   + ++    PR++ + +  
Sbjct: 173 YLTIDRQLKRSSISSTLSTLQTIVRMAVKKGVLDFYPFLGY-SYERPKGEPRSITQDELQ 231

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGK 193
            ++D        E +W + R    L++ + C  GL IS+  +L  +NI+ ++  L I+G+
Sbjct: 232 KIID-------LEIEWENYRIVRDLFV-FSCFSGLAISDVRNLREENIVLEEGELCIKGR 283

Query: 194 GDKIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL----NPGVFQRY 246
             K +    V +LP    AI+E Y                RG R   +       V    
Sbjct: 284 RMKTKTPYRVQVLPPAW-AIMERY----------------RGKRAGFVFDVPTTDVILNG 326

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           I  ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQIY  V+S+ 
Sbjct: 327 IHHIQRNIGMETPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAAVSSER 386

Query: 306 GGDWMMEIYDQTHPSITQK 324
               M ++  +   + T K
Sbjct: 387 IHRDMQKVQQRIQDTFTLK 405


>gi|30908746|gb|AAP37605.1| IntI [uncultured bacterium]
          Length = 161

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 37/57 (64%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R ++Q      +    + HTLRHS ATHLL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 105 RGVKQAAHAARIDKHVSCHTLRHSSATHLLEDGYDIRTVQELLGHSSVETTMIYTHV 161


>gi|295841276|dbj|BAJ07044.1| integrase [uncultured bacterium]
          Length = 393

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 11/133 (8%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVRKA 209
           +  R   +  L+YG G+R+ E + L  Q++  D  Q T+R+ GKG K R+VPL   +  A
Sbjct: 262 MSGRQRLMASLMYGTGMRLMECVRLRVQDVDFDYRQITVRM-GKGGKDRVVPLPEKLPPA 320

Query: 210 ILEYYDLCPFDLNLNIQLPLFR-------GI-RGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           +    +            P  R       GI R   ++    Q+ +R+  R   +    T
Sbjct: 321 LARKLNGAEKLWTWQFVFPATRLSTDLVFGITRRHHIHETSLQKGVRKAARSAAVSKRVT 380

Query: 262 AHTLRHSFATHLL 274
           +HTLRHSFATHLL
Sbjct: 381 SHTLRHSFATHLL 393


>gi|296328607|ref|ZP_06871124.1| integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296154206|gb|EFG95007.1| integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 338

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 133/294 (45%), Gaps = 38/294 (12%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTI----RQLSYTEIRAFISKRRTQKIGDRS 87
           S+ T++ Y    + FL F+ +  E   +I  +    + +   ++ A+I         DR 
Sbjct: 43  SEKTVKDYMFHLKDFLHFV-YDGENDFSISEVIPLMQDIEKEDVEAYI----VHLFEDRK 97

Query: 88  LKRS-----LSGIKSFLKYLKKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLV 138
           LK++     LS +KS  K L+   +      + +    RN++  N L  ++++ + +   
Sbjct: 98  LKKTSVNTILSALKSLYKELESNGLKNPVKYIKLFKVNRNIE--NVLKVSIDDIRKII-- 153

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLR-IQGKGD 195
              L     E K+   RN  ILY L+  G+R  E L+L  ++ +  +D+   + IQ K  
Sbjct: 154 --GLYKIDSEKKY---RNITILYTLFYTGMRSKELLTLQFKHYLKREDEYFFKLIQTKSG 208

Query: 196 KIRIVPLLPSVRKAILEY--YDLCPFDLNLNI--QLPLFRG--IRGKPLNPGVFQRYIRQ 249
           K    P+  S+ K + EY  Y +  + L+L    +  +F    +   PL+       I+ 
Sbjct: 209 KDVYKPIHKSLVKKLEEYKKYLISMYSLDLKDLDEKYIFSTSVLDNTPLSYRSLNAIIQD 268

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           + + +G  +S   H +RH+ AT L  +G D+  I+  LGH     T++Y N  S
Sbjct: 269 MGKLIGKDIS--PHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARS 320


>gi|332672868|gb|AEE69685.1| integrase/recombinase [Helicobacter pylori 83]
          Length = 321

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 117/250 (46%), Gaps = 29/250 (11%)

Query: 48  IFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK 106
           +FL F Y ++ + +++ R LS  ++  F+ +   Q     S+ + +  ++ F  YL ++K
Sbjct: 77  LFLFFDYFKDNLKLRSFRMLSEEQVINFLFEL-AQNRKPSSMAKYVMYLRQFFDYLDRKK 135

Query: 107 ITTESNIL-NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
             +   +L N+   K   SLPR LN K     +   LL  S  T + + RN  IL ++  
Sbjct: 136 HYSFDFVLKNLAFAKTKESLPRHLNYKDLKAFL-KTLLEYSPATSF-EKRNKCILLIVIL 193

Query: 166 CGLRISEALSLTPQNIMDDQS--TLRIQGKGDK-----IRIVPLLPSVRKAILEYYDLCP 218
            GLR  E L++  ++I  ++   ++ IQGKG K     I+   L PS+   + + Y L  
Sbjct: 194 GGLRKCEVLNIELKHIQVEEQNYSILIQGKGRKERKAYIKKSLLEPSLNAWLSDDYRLKY 253

Query: 219 FDLNLNIQLPLFRGIRGKPLN--------PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           F+      + LF+  + K  N        P +F+  + Q++ Y      T  H  RHSFA
Sbjct: 254 FN-----GVYLFKKDKQKAQNSLTLYNFIPLIFK--LAQIKHYK--QYGTGLHLFRHSFA 304

Query: 271 THLLSNGGDL 280
           T +     DL
Sbjct: 305 TLIYQETQDL 314


>gi|282890473|ref|ZP_06298996.1| hypothetical protein pah_c022o041 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499470|gb|EFB41766.1| hypothetical protein pah_c022o041 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 167

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 11/122 (9%)

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQ 244
           S + I+GKGDK+R  PL       +    D             +F   R +P+   G+  
Sbjct: 17  SIILIRGKGDKLRRCPLWHDTVNELTSLMD------ERGPNEHVFLNHRKEPITRFGIHT 70

Query: 245 RYIRQLRRYLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              R ++  L +P       + HT+RH+ ATHLL  G D+ +I++ LGH  ++TT IY  
Sbjct: 71  LVKRHVKTALIVPSLEKKRISPHTIRHTTATHLLHAGVDINTIRAWLGHVSINTTNIYVE 130

Query: 301 VN 302
           V+
Sbjct: 131 VD 132


>gi|171779406|ref|ZP_02920370.1| hypothetical protein STRINF_01251 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282023|gb|EDT47454.1| hypothetical protein STRINF_01251 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 311

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 12/146 (8%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY 213
           ++ L+   GLR SEAL+LTP++    + TL +    +       LP     SVRK  +++
Sbjct: 143 LILLIAKTGLRFSEALALTPKDFDLTRQTLSVSKTWNYKENGGFLPTKNESSVRKIPIDW 202

Query: 214 YDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
             +  F     +L    P+F  ++GK  N  V  R  R  +   G+P+  + H LRH+ A
Sbjct: 203 QTVIQFAELLKSLPEDKPIF--VKGKVYNSTVNDRLARHCKN-AGVPI-ISIHGLRHTHA 258

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQ 296
           + LL  G  + S+   LGH  ++TTQ
Sbjct: 259 SLLLFAGVSIASVARRLGHSNMTTTQ 284


>gi|303236694|ref|ZP_07323275.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483198|gb|EFL46212.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 407

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 21/169 (12%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIR 198
           L+   +E +  + R + IL L   CGLR  +   LT +NI      L+ +    KG    
Sbjct: 240 LIQCHYENENPNVRRAFILCLY--CGLRFCDVKDLTYKNIDYTNHLLKFEQNKTKGHSAN 297

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL---G 255
              ++P +   +L      P DL+ +I             N   ++   + ++R++   G
Sbjct: 298 SGVVIP-LNDGLLSLIGEAPEDLDTSI------------FNLPTYESCCKSVKRWVKRAG 344

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +    + H  RHSFA ++L+NG +++++ S+LGH  L  T+ YT    K
Sbjct: 345 INKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|194433591|ref|ZP_03065868.1| site-specific recombinase [Shigella dysenteriae 1012]
 gi|194418183|gb|EDX34275.1| site-specific recombinase [Shigella dysenteriae 1012]
          Length = 252

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 98/231 (42%), Gaps = 52/231 (22%)

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL------------L 163
           M +  +  SLP A++   AL L    ++H       +    SA+L+             L
Sbjct: 1   MYSAGQPASLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPDLHRKMLLATL 60

Query: 164 YGCGLRISEALSLT-------PQNIMDDQSTL------------RIQGKGDKIRIVPLLP 204
           +  G RI+EAL+LT       P       +TL            R+       R+VPL  
Sbjct: 61  WNTGARINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRMPAGQQTHRLVPLSD 120

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG------- 255
           S   + L+        +   +++P+ R  R  G+     +++   R +R ++G       
Sbjct: 121 SWYVSQLQ-------TMVATLKIPMERRNRRTGRTEKARIWEVTDRTVRTWIGEAVAAAA 173

Query: 256 -----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                  +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 174 ADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 224


>gi|150403424|ref|YP_001330718.1| phage integrase family protein [Methanococcus maripaludis C7]
 gi|150034454|gb|ABR66567.1| phage integrase family protein [Methanococcus maripaludis C7]
          Length = 322

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 129/305 (42%), Gaps = 45/305 (14%)

Query: 19  QNWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFY-------TEEKITIQTIRQLSY 68
           + W+     ER   G+ K T+Q    D  +  +FL F         EE    + I+  +Y
Sbjct: 24  KKWVDKFIAEREFDGIKKTTIQG---DVNRLKVFLNFIFNRLEKNPEEMTNAEFIKFFNY 80

Query: 69  TEIRAFISKRRTQKIGDRSLK-----RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
            E    +S R TQ     +LK       L   K F    ++RK  T   I      K  +
Sbjct: 81  LEKERKLS-RNTQNKYYNNLKVFYKLMRLENFKDFKDESEERKRFTSFEI------KHYD 133

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           SL   +     L ++   +L T   TK    R++ I+  L+  G RISEAL L   +   
Sbjct: 134 SLSTEI-----LNMILTEILETRSTTK---IRDAMIIRFLWDTGARISEALKLEYGDSDL 185

Query: 184 DQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLN-- 239
           ++   R++  KG + RIV    +     L   + C   +L    +  +F+  +G+PL   
Sbjct: 186 EKGEFRLRNTKGKEERIV----TCSNDTLTLVNYCLKANLRKEPKDKIFQTYKGEPLQRN 241

Query: 240 --PGVFQRYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
               VF+  +++L+    +P +     H+LRH  A  LL  G  +  ++  LGH  L TT
Sbjct: 242 RVSDVFRNAVKELKSQGRIPENKRVVIHSLRHGRAVDLLDKGMPIDIVKEYLGHKSLETT 301

Query: 296 QIYTN 300
             Y++
Sbjct: 302 LYYSH 306


>gi|15606394|ref|NP_213774.1| hypothetical protein aq_1137 [Aquifex aeolicus VF5]
 gi|2983608|gb|AAC07178.1| putative protein [Aquifex aeolicus VF5]
          Length = 290

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 132/311 (42%), Gaps = 55/311 (17%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + W ++LE  +  S+ T ++Y    ++F  F     +EK   + I  L  + +  F+ + 
Sbjct: 5   EAWERHLE--KTKSQKTKETYLMLVKEFFKFHK--VDEK---EIIENLKPSMVYRFVDE- 56

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR----------NLKKSNSLPRA 128
               +   SL  +LS ++ FLK+L +R+   +S   +++          N KK+   PRA
Sbjct: 57  --SDLNPSSLLTTLSALRYFLKFLTRREYIEKSMYESLKAAIEEAREELNAKKTPRYPRA 114

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQST 187
           L  ++   + + V             +   I  L    G+R+ E   L+ +N  MD    
Sbjct: 115 LTREEIEAIFEKVK----------GKKYEKIYTLFLYSGIRLGEYEKLSEENFFMDKSGI 164

Query: 188 LRIQ-----GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN--- 239
           L I+      K +K R+VP+L   +            D  L +   L R I     N   
Sbjct: 165 LWIKLTPEMTKRNKGRLVPILSPDK------------DETLKVTEKLSRWIEDFEGNFRV 212

Query: 240 -PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QI 297
             GV Q Y  +L + L +  S   H+ RH++ T+L+++G  +  ++   GH  + TT + 
Sbjct: 213 KRGVLQVYTDRLSKRLNIDFSI--HSFRHTYITNLINSGFPIEVVKEFAGHSSIKTTVET 270

Query: 298 YTNVNSKNGGD 308
           Y   + K   +
Sbjct: 271 YYKFSQKRAQE 281


>gi|291530639|emb|CBK96224.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 310

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 68/157 (43%), Gaps = 18/157 (11%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI-------RIVPLLPSVR 207
           RN  IL  L   G+RI E  +LT  +I  D   + I+    +I       R   LL    
Sbjct: 130 RNLGILICL-STGIRIGEVCALTWDDIDIDNGVIHIRKTIQRIYVNEGGVRKTELLIDTP 188

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIR---------GKPLNPGVFQRYIRQLRRYLGLPL 258
           K      D+        +  PL + +R          +P  P  ++ Y ++L   LG+P 
Sbjct: 189 KTATSMRDIPMIKELYEVLKPLKKVVRSDYYVLTNDAEPTEPRTYRNYYKRLLDKLGIP- 247

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
               H LRHSFAT  + +  D +++  ILGH  +STT
Sbjct: 248 PIKFHGLRHSFATRCIESKCDYKTVSVILGHSNISTT 284


>gi|298528030|ref|ZP_07015434.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511682|gb|EFI35584.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 338

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 119/291 (40%), Gaps = 27/291 (9%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           Q L   +G+S  T+ +Y      FL F +      I    I  LS   I  F+    + +
Sbjct: 13  QYLPRTKGVSSNTILAYRHTFSLFLPFASKTLGRDINSLEIGHLSTQLILDFLDHLESGR 72

Query: 83  IGD-RSLKRSLSGIKSF---LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               R+    L+  KS    +++L          I+++   +    L   L  ++ L ++
Sbjct: 73  NNSARTRGHRLAVFKSLARMIRFLYPEHKLLADRIISIPQKRFPKKLAAFLTHEEVLLVL 132

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D++ L  S        R+  I++LLY  G R  E+ SL        + TL I GKG++ R
Sbjct: 133 DSINLKKSGA-----FRDYTIIHLLYNSGARAEESASLRLDYFDPHKKTLAILGKGNRYR 187

Query: 199 IVPLLPSVRKAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYL 254
            + L P   + +  Y   Y   P  L+ N    LF   R +     G++    R  R+YL
Sbjct: 188 QIELWPKTVQLMSMYIQKYRPRPKPLHQNT---LFLNQRRQGFTRNGIY----RLCRKYL 240

Query: 255 GLPLSTT-------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            L             H  RHS A ++L  G  L  I++ LGH  L +T +Y
Sbjct: 241 SLVFEENRFQGLNPVHCFRHSCAINMLGTGFSLTDIKNHLGHENLQSTMVY 291


>gi|191168738|ref|ZP_03030516.1| Int [Escherichia coli B7A]
 gi|331658405|ref|ZP_08359367.1| integrase [Escherichia coli TA206]
 gi|190901228|gb|EDV60999.1| Int [Escherichia coli B7A]
 gi|323172004|gb|EFZ57648.1| integrase [Escherichia coli LT-68]
 gi|331056653|gb|EGI28662.1| integrase [Escherichia coli TA206]
          Length = 334

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 22/143 (15%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +  L    G R SEA  L  + I+ ++ T  ++ K  + R VP+  +V +AI        
Sbjct: 185 VALLCLSTGARWSEACKLRGEQIVHNRVTF-LETKNGRKRTVPISQAVCEAIKTRETGGL 243

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-GLPLSTTAHTLRHSFATHLLSNG 277
           F++                     ++ +   L+R    LP    AH LRH+FA+H + NG
Sbjct: 244 FEVK--------------------YREFCLALKRVKPDLPKGQAAHVLRHTFASHFVMNG 283

Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300
           G++ ++Q ILGH  +  T  Y +
Sbjct: 284 GNIIALQKILGHATIQQTMAYAH 306


>gi|307565482|ref|ZP_07627968.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345813|gb|EFN91164.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 410

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 14/156 (8%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            ++ C  GL   +  +LTP NI  +DD+  +  + +   +    LL  + K+I+  Y   
Sbjct: 249 FIFSCFTGLAYIDVSNLTPDNIVTLDDKLWIMTKRQKTSVETNVLLLDIPKSIIAKYSHK 308

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            +         LF  +  +  N      Y++++    G+  + T H  RH+FAT  LS G
Sbjct: 309 TYR-----DGKLFPILTNQKTNA-----YLKEIADICGIKKNQTFHLARHTFATMSLSKG 358

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             + S+  +LGH  + TTQIY  + +K   D M ++
Sbjct: 359 VPMESVSKMLGHTNIKTTQIYARITNKKIEDDMEQL 394


>gi|110597335|ref|ZP_01385623.1| integrase/recombinase-related protein [Chlorobium ferrooxidans DSM
           13031]
 gi|110341171|gb|EAT59639.1| integrase/recombinase-related protein [Chlorobium ferrooxidans DSM
           13031]
          Length = 71

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 31/43 (72%)

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           S T H LRHS+ATHLL  G DLR IQ +LGH    TT+IYT+V
Sbjct: 14  SVTLHWLRHSYATHLLEAGTDLRYIQELLGHKSSKTTEIYTHV 56


>gi|150390613|ref|YP_001320662.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
 gi|149950475|gb|ABR49003.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
          Length = 321

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 12/155 (7%)

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL---LPSV 206
           + + R+  I+  L G G R+   +++  ++I  +   +++ + K  + +++PL   L  V
Sbjct: 139 FAEYRDWTIVNYLLGTGNRVDTIVNVRIKDIDFESGYIKLDKTKNKRQQLIPLSNVLAKV 198

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
               L+Y D    D        LF  + G  LN       I++  +  G+ L T+ H  R
Sbjct: 199 LTEYLQYRDGEKEDY-------LFVSVYGAKLNGNSLGHSIKKYNQRRGV-LKTSVHLFR 250

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H+FA   + NGGD+  +Q ILGH  L   + Y N+
Sbjct: 251 HTFAKKWILNGGDIFRLQKILGHSTLDIVREYVNM 285


>gi|260893051|ref|YP_003239148.1| integrase family protein [Ammonifex degensii KC4]
 gi|260865192|gb|ACX52298.1| integrase family protein [Ammonifex degensii KC4]
          Length = 311

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 121/295 (41%), Gaps = 28/295 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GL++LTL +Y      F+ F          +    +L    IR F    R    G  ++K
Sbjct: 26  GLAELTLSTYRKIVTAFVRFCG-------PLVGYEELRRAAIRYFA---RPSSPGYHNIK 75

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             L  +K+F  +  +      + +  +R  K+  S  R       L  +  +L     +T
Sbjct: 76  --LRHLKAFFNWCVREGHLPANPLEGIRKAKEDLSRVR----HAPLEALKRLLAQPDRKT 129

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL---PSV 206
            +   R+  +L      G R  E L +TP ++      L I+ +  K R+   L   P  
Sbjct: 130 -YAGLRDYCLLLTQLDTGARPGELLRVTPSDLNLAARELHIRPEVAKTRVGRTLVVSPLT 188

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            +A+       P       ++PLF    GKP+NP  +   +R+  +  G+    T + LR
Sbjct: 189 AQALARLLRARPS--WWGEEVPLFASETGKPMNPTYWAERVREYCQRAGV--KVTPYGLR 244

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           H+FA   L    D  ++Q +LGH  LS T+ Y     ++    + +I+++  P +
Sbjct: 245 HTFALEFLKASNDPFALQRVLGHRDLSMTRRYVRYLQED----VRQIHEKASPVV 295


>gi|237713490|ref|ZP_04543971.1| tyrosine type site-specific recombinase [Bacteroides sp. D1]
 gi|262407276|ref|ZP_06083824.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229446472|gb|EEO52263.1| tyrosine type site-specific recombinase [Bacteroides sp. D1]
 gi|262354084|gb|EEZ03176.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 419

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 64/135 (47%), Gaps = 10/135 (7%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           GLR  + + +T + +  + +  RI     K + V  +P   +A    YDLC    + + Q
Sbjct: 275 GLRHCDIMKMTWKELTKEGTHYRINFDQKKTKGVEYMPISEQA----YDLCGEPGHPD-Q 329

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           L +F G+           R+I       G+    T H  RH++AT  LSNG DL ++  +
Sbjct: 330 L-VFEGLPAPSWISKPLARWIEAS----GITKHITFHCFRHTYATLQLSNGTDLFTVSKM 384

Query: 287 LGHFRLSTTQIYTNV 301
           LGH  + TTQ YT V
Sbjct: 385 LGHTNVRTTQRYTKV 399


>gi|323702858|ref|ZP_08114516.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
 gi|323532116|gb|EGB21997.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
          Length = 358

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 133/301 (44%), Gaps = 30/301 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ---LSYTEIRAFISKRRTQKIGDR 86
           GLS+ T++ Y+ + + FL +L        T+  I Q   L+Y     F +          
Sbjct: 67  GLSRETVEEYKRNFQHFLNYLN--VNGITTLNLINQHLLLNYVNQLGFFTHY-------- 116

Query: 87  SLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           +  R+LS IK +L+YL  + +T    S ++      K   LP   ++++        LL 
Sbjct: 117 TRHRNLSVIKGYLRYLYDQGLTETDFSRVIPKDKYIKQPKLPSTYSKEEV-----KALLA 171

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI-VPLL 203
               +     R+ A++ +    GLR S+  +LT +NI  +++ + +  +  ++RI +PLL
Sbjct: 172 AIDRSSPKGKRDYAMVLITALLGLRASDVCNLTFENIQWEKNLIVLNQQKTQVRIELPLL 231

Query: 204 PSVRKAILEYYDL------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
             V +AI++Y          P+ + L++  P  R  R    +   F  Y+R+   +    
Sbjct: 232 SEVGEAIIDYLKYGRPSSELPY-IFLHVTSPYDRLNRSTLHSIVCF--YLRRADIHYEKQ 288

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRHS A  LL     L  I  +LGH    +T++Y  ++  +     +E+   +
Sbjct: 289 RKHGPHALRHSLAGVLLEKKTPLPVISEVLGHKNTESTRLYLRIDMNSLRQCALEVPPVS 348

Query: 318 H 318
           H
Sbjct: 349 H 349


>gi|312878202|ref|ZP_07738129.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795015|gb|EFR11417.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 324

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/288 (20%), Positives = 128/288 (44%), Gaps = 17/288 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q++L + E+ R LSK T+  Y+   + F+ F      ++ +++ +  ++   +  +I+  
Sbjct: 23  QDFLLDCEV-RSLSKWTIDFYKRTLKPFVFF-----GKQNSVEYVNDITKEMVNKYIAHL 76

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +       ++   L G+++FL +LKK +       +NM  LK+   +    +++    + 
Sbjct: 77  KDSIENTTTINTYLRGLRTFLNFLKKEEFLENEIEINM--LKEEEKIKETYSDED---IK 131

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             +      +  + + RN  ++  L   G R+S  +++   ++  +   + I+   +K  
Sbjct: 132 KLLKKPDLKKCSFAEYRNWVLVNYLLETGNRLSSVINIKVSDVDLENGIVTIKHSKNKSH 191

Query: 199 -IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
              P+  ++ K + EY        NL     LF    G  +     ++ IR   +  G+ 
Sbjct: 192 YFSPISNTMCKILREYIAT----WNLKEDDYLFPSQSGAQMTKNTIEKAIRDYNKKRGVK 247

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           L T+ H  RH+FA + +   G+   ++ +LGH  L  T  Y  + S++
Sbjct: 248 L-TSIHAFRHTFAKNYIKTNGNPFKLKQLLGHKTLEITNRYVRLYSED 294


>gi|281358281|ref|ZP_06244764.1| integrase family protein [Victivallis vadensis ATCC BAA-548]
 gi|281315371|gb|EFA99401.1| integrase family protein [Victivallis vadensis ATCC BAA-548]
          Length = 330

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 97/231 (41%), Gaps = 21/231 (9%)

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           +R   K+   +++R LS   SF  +L+      +S +  +  +K +  +  A  ++    
Sbjct: 109 ERNVSKVTIDNIRRILS---SFFAWLEDEDYIVKSPVRRIHRIKTAKIIKEAFTDETIEV 165

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L D             + RN A++ LL   G+R+ E + L   +I  ++ +  + GKG  
Sbjct: 166 LRDTCS----------EVRNLAMVELLASSGMRVGELVKLNRTDINFNERSCIVFGKGSS 215

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYL 254
            R V      +  + +Y +    D        LF  +R   K L  G  +  +R+L R  
Sbjct: 216 EREVYFDARTKIHLWQYLNSRTDD-----NPALFVSLRSPHKRLEIGGVEFLLRKLGRIA 270

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +  +   H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN  N
Sbjct: 271 AIE-NVHPHRFRRTLATRAIDKGMPIEQVQRLLGHKKIDTTMCYALVNQSN 320


>gi|41057040|ref|NP_957522.1| putative integrase [Streptococcus thermophilus]
 gi|34980337|gb|AAQ84064.1| putative integrase [Streptococcus thermophilus]
          Length = 308

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 115/275 (41%), Gaps = 29/275 (10%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T+++Y+   RQF  +L  +         IRQ    ++ AF    +   +   +++  ++ 
Sbjct: 38  TVETYKKALRQFFNYLGLHG--------IRQPQREDVLAFRDDLKASGLKPTTVQNYITA 89

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
            + F K+ ++  +    NI       K   N     L  +QA  ++ N+   T       
Sbjct: 90  TRIFFKWTEQEGLY--PNIAEHVKGAKLDKNHKKDYLTSRQAKEVLANIKTDTEE----- 142

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKG--DKIRIVPLLPSVRK 208
             RN AIL L+   GLR  E       ++  + + + L +QGKG  +K   + +   V K
Sbjct: 143 GLRNYAILSLMVTGGLRTIEVSRADVGDLRTVGENTVLFVQGKGREEKTEYIKISAPVEK 202

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGI----RGKPLNPGVFQRYIRQLRRYLGLPLST-TAH 263
           AI  Y  L   DL    Q PLF       RGK +        ++   +  G   +  TAH
Sbjct: 203 AIRTY--LKARDLTTEEQ-PLFTSTSNNSRGKRITTRTVSAVVKNALKNAGYDSARLTAH 259

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +LRH+  T  L  G ++  +Q    H  L+TT IY
Sbjct: 260 SLRHTAITLALLAGREITEVQQFARHANLNTTMIY 294


>gi|317124017|ref|YP_004098129.1| integrase [Intrasporangium calvum DSM 43043]
 gi|315588105|gb|ADU47402.1| integrase family protein [Intrasporangium calvum DSM 43043]
          Length = 308

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 93/233 (39%), Gaps = 29/233 (12%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN-------VLLH 144
           L  +++F KYL    +  +     +       + P   ++     LVD        +LL 
Sbjct: 68  LGSVRTFAKYLHATGVDVQVPPAGILPAGPRRAAPFIYSQSDLDALVDACGQVFTRLLLA 127

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            +  T         ++ LL   GLRI EAL LT  +I      L I+    K R+VP+ P
Sbjct: 128 ATMRT---------VIGLLAATGLRIGEALRLTTGDIDTVAGVLLIRASKRKDRLVPVHP 178

Query: 205 SVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           S  +A+  Y DL      +     PL    RG        + +  +L    GL     AH
Sbjct: 179 STVEALFAYRDLPARAAAHPATGGPLLVSTRGTGYQLSTIEAHFARLATAAGLRPRGAAH 238

Query: 264 T----LRHSFAT-HLL---SNGGD----LRSIQSILGHFRLSTTQIYTNVNSK 304
                LRH+FAT H+    S GGD    L  + + LGH   + T  Y + + +
Sbjct: 239 PRLHDLRHTFATAHMAAAYSRGGDPQRTLTLLATWLGHTSTAHTYWYLSASPE 291


>gi|317490960|ref|ZP_07949396.1| phage integrase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920507|gb|EFV41830.1| phage integrase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 368

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 21/142 (14%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I  +    G R SEA +L    +   + +  I+ KG K R VP+         E Y+   
Sbjct: 199 IAKICLSTGARWSEAETLEGHQVSKYRISF-IKTKGKKNRTVPI-------TQELYE--- 247

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
                  +LP  RG    P     F+R ++  R  + LP     H LRH+FA+H + NGG
Sbjct: 248 -------ELPKNRGRLFTPCRK-AFERAVK--RAGITLPDGQCTHVLRHTFASHFMMNGG 297

Query: 279 DLRSIQSILGHFRLSTTQIYTN 300
           ++  ++ +LGH  +  T IY +
Sbjct: 298 NILVLRDVLGHADIRMTMIYAH 319


>gi|297565034|ref|YP_003684006.1| integrase family protein [Meiothermus silvanus DSM 9946]
 gi|296849483|gb|ADH62498.1| integrase family protein [Meiothermus silvanus DSM 9946]
          Length = 251

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 10/159 (6%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYD 215
           +L  L+  G R+SE + L  Q+   D     +   + K   +R VP+LP++ + +     
Sbjct: 97  MLKTLFYTGCRVSEFVFLRAQDAYLDGEAPHLYVHRAKKGSVRYVPILPALAQELR---- 152

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
                L    +  LF   R +  +P   Q+ I+Q     G+      H LRHS A  LL 
Sbjct: 153 ---VHLAGRTRGYLFESNRHQRYSPRAIQKLIQQAAAEAGIEKRVYPHLLRHSVAQILLD 209

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            G  L  +Q  LGH    TTQIY   +  + G+    ++
Sbjct: 210 RGMPLEQLQKFLGHQDPKTTQIYAESSLASVGESYRRVF 248


>gi|294785567|ref|ZP_06750855.1| integrase/recombinase [Fusobacterium sp. 3_1_27]
 gi|294487281|gb|EFG34643.1| integrase/recombinase [Fusobacterium sp. 3_1_27]
          Length = 328

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 133/294 (45%), Gaps = 38/294 (12%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTI----RQLSYTEIRAFISKRRTQKIGDRS 87
           S+ T++ Y    + FL F+ +  E   +I  +    + +   ++ A+I         DR 
Sbjct: 33  SEKTVKDYMFHLKDFLHFV-YDGENDFSISEVIPLMQDIEKEDVEAYI----VHLFEDRK 87

Query: 88  LKRS-----LSGIKSFLKYLKKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLV 138
           LK++     LS +KS  K L+   +      + +    RN++  N L  ++++ + +   
Sbjct: 88  LKKTSVNTILSALKSLYKELESNGLKNPVKYIKLFKVNRNIE--NVLKVSIDDIRKII-- 143

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLR-IQGKGD 195
              L     E K+   RN  ILY L+  G+R  E L+L  ++ +  +D+   + IQ K  
Sbjct: 144 --GLYKIDSEKKY---RNITILYTLFYTGMRSKELLTLQFKHYLKREDEYFFKLIQTKSG 198

Query: 196 KIRIVPLLPSVRKAILEY--YDLCPFDLNLNI--QLPLFRG--IRGKPLNPGVFQRYIRQ 249
           K    P+  S+ K + EY  Y +  + L+L    +  +F    +   PL+       I+ 
Sbjct: 199 KDVYKPIHKSLVKKLEEYKKYLISMYSLDLKDLDEKYIFSTSVLDNTPLSYRSLNAIIQD 258

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           + + +G  +S   H +RH+ AT L  +G D+  I+  LGH     T++Y N  S
Sbjct: 259 MGKLIGKDIS--PHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARS 310


>gi|32451217|emb|CAD55723.1| putative integrase [Bacteroides coprosuis]
          Length = 192

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 27/163 (16%)

Query: 160 LYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPS----VRKAILEY 213
           + L+Y    RI+E LS+  ++I    D+  + + GKG KIR + LLP     ++  I E+
Sbjct: 1   MILMYATAARINEILSIKIEDIHIEVDKPYITVVGKGGKIRTLYLLPKAISHLKAYIREF 60

Query: 214 YDLCPFDLNLNIQLPLF----RGIRGKPLNPGVFQRYIRQLRRYLG--------LPLSTT 261
           + +   +     +  LF     GI GK  +  V     +QL+++          +P +  
Sbjct: 61  HGVKSPN-----EAYLFYSRNHGIYGKLSDVAVN----KQLKKHADAARLSCKEVPDNMH 111

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           AH  RH+ ATH + +G  +  I  +LGH  L+TT  Y ++ ++
Sbjct: 112 AHIFRHAKATHWMDDGMQIVQISYLLGHSNLNTTMKYLDITTE 154


>gi|222834321|gb|EEE72798.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 27/196 (13%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ---TIRQLSYTEIRAFISK 77
           +L  L   R L+  TL SY  D       L+    + I +     +  L    IR+F ++
Sbjct: 479 YLDWLATSRKLAAHTLTSYGHD-------LSVLQSQAIRLAPGVALLALETRHIRSFAAR 531

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALT 136
                +  R++ R+LS  + F  +  +     +SN ++ +R  K+   LP+AL+ + A+ 
Sbjct: 532 LHGNGLSARTIARTLSAWRGFYLWAARHGHGVQSNPVDGVRAPKRGRPLPKALSVEHAVA 591

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-----------DQ 185
           LV     H   +T     R+ A+  L Y  GLR+SE + L  +   D           D 
Sbjct: 592 LV----AHRQDDTN-ESLRDQAVFELFYSSGLRLSELIQLDVRYTEDGDYRSSGWLDLDG 646

Query: 186 STLRIQGKGDKIRIVP 201
           + + + GKG + R VP
Sbjct: 647 AEVTVLGKGSRRRTVP 662


>gi|218260603|ref|ZP_03475830.1| hypothetical protein PRABACTJOHN_01493 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224449|gb|EEC97099.1| hypothetical protein PRABACTJOHN_01493 [Parabacteroides johnsonii
           DSM 18315]
          Length = 406

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 81/170 (47%), Gaps = 17/170 (10%)

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI 199
           ++L      K ++      ++ ++  GL  S+   L+P++++ D++  L I+    K +I
Sbjct: 232 IILAKEFTIKRVEQVRDVFVFCIFT-GLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKI 290

Query: 200 ---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
              +P+LP     + +Y D+      L   LP+    R           Y++++    G+
Sbjct: 291 MCNIPVLPVAASILDKYKDVAECTGKL---LPVLSNQR--------MNSYLKEIADVCGI 339

Query: 257 PLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             + + HT RHS+AT + L+NG  + ++  +LGH   S T+ Y  V  +N
Sbjct: 340 HKNLSTHTARHSYATSICLANGVSIENVAKMLGHADTSVTKHYARVLDQN 389


>gi|332204893|gb|EGJ18958.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus
           pneumoniae GA47901]
          Length = 321

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 114/252 (45%), Gaps = 27/252 (10%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRS----LKRSLSGIKSFLKYLKKRKITTESNILNM 116
           +++ QL+  ++R++++  +++K   ++    ++R LS   SF  +L++ +   ++ I  +
Sbjct: 80  ESVTQLTTDDLRSYLANYQSEKDCSKANLDNIRRILS---SFFAWLEQEEYIIKNPIRRI 136

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           + +K   ++     ++    + DN            + R+ AI+ LL   G+R+ E + L
Sbjct: 137 KKIKTEQNVKETYTDEHLEIMRDNCE----------NLRDLAIIDLLASTGMRVGELVQL 186

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI-LEYYDLCPFDLNLNIQLPLFRGIRG 235
              +I  +     + GKG K R  P+    R  I L  Y     +   +    LF  + G
Sbjct: 187 NRSDIDFENRECVVFGKGKKER--PVYFDARTKIHLRNY----LNDRKDSHPALFVTLVG 240

Query: 236 KPLNPGV--FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           K    G+   +  +R+L   LG+      H  R + AT  +  G  +  +Q +LGH ++ 
Sbjct: 241 KVQRLGIAGVEIRLRKLGDKLGIQ-KVPPHKFRRTLATKAIDKGMPIEQVQKLLGHSKID 299

Query: 294 TTQIYTNVNSKN 305
           TT  Y  VN  N
Sbjct: 300 TTLAYAMVNQNN 311


>gi|218132478|ref|ZP_03461282.1| hypothetical protein BACPEC_00337 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992588|gb|EEC58590.1| hypothetical protein BACPEC_00337 [Bacteroides pectinophilus ATCC
           43243]
          Length = 350

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 124/284 (43%), Gaps = 30/284 (10%)

Query: 38  SYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEI-------RAFISKRRTQKIG 84
           +Y  D R F  F+      ++ + ++IT+     +S T+I       R ++   R     
Sbjct: 46  AYAMDLRGFFEFIRERKYNSYESLKQITLVDAENISSTDIIEYLRHSRLYVKNGREVTNS 105

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           +R+ KR LS ++SF  Y  K+ +  ++    +   K  +     L+  +   L+DNV   
Sbjct: 106 ERAAKRKLSSLRSFYGYYNKQGLMKKNPAFQVDMPKIHDQAITRLDVNEVAELLDNVESG 165

Query: 145 --------TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
                    +HE   +  R+ A+L LL G G+R+SE + L   ++  D   +++  KG  
Sbjct: 166 NRLTKNQLAAHEE--LKTRDLALLTLLLGTGIRVSECVGLDINDVDFDNDRIKVVRKGGA 223

Query: 197 IRIVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
              V     VR+A+L+Y D    L P   + N    LF     K L     +  +++   
Sbjct: 224 ESFVYFGDEVREALLDYMDERSTLQPAAGHEN---ALFISRNNKRLCVRSVENLVKKYAM 280

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            +      T H LR ++ T+L     D+  +  +LGH  ++TT+
Sbjct: 281 TVTTVKHITPHKLRSTYGTNLYQESNDIYLVADVLGHKDVNTTR 324


>gi|329957482|ref|ZP_08297957.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
 gi|328522359|gb|EGF49468.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
          Length = 393

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 16/148 (10%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGK---GDKIRIVPLLPSVRKAILEY 213
           A L+  Y  G+R S+  +L+ +NI+D +Q T  I      G ++R+   L    K I+  
Sbjct: 237 AFLFCCYA-GMRYSDFTNLSSENIVDINQETWLIYKSVKTGTEVRLPLYLLFAGKGII-- 293

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
             L  +  NL      FR      +N  +       L +  GL  + + HT RH+ AT L
Sbjct: 294 -ILNKYRDNLE---GFFRLRDNSNVNKDLLT-----LAKLAGLSKNISFHTARHTNATLL 344

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + NG ++ ++Q +LGH  + TTQ+YTN+
Sbjct: 345 IYNGVNITTVQKLLGHKSVKTTQVYTNI 372


>gi|237750988|ref|ZP_04581468.1| phage integrase [Helicobacter bilis ATCC 43879]
 gi|229373433|gb|EEO23824.1| phage integrase [Helicobacter bilis ATCC 43879]
          Length = 370

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 102/207 (49%), Gaps = 30/207 (14%)

Query: 106 KITTESNILNM-RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLY 164
           +I T+SN + + ++ KK  + P+ LN+   L  V ++L H   +TK +D R      L  
Sbjct: 151 EIFTDSNPMQIIKHKKKEYAEPQRLNDPLNLNQVMDILKHL--KTKDMDNRLKMYFQLAL 208

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRI-----QGKGD-----------KIRIVPLLPSVRK 208
             G+R++E L+L   +I  +++T+++     QG               I+I+P L S+ K
Sbjct: 209 LTGMRVNEILALKYSDINVEKNTIQVYKSLQQGTNTISTTKTENGKRNIQILPFLKSLLK 268

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
             L+           N    +F   RG  ++    ++Y +++ + L +    T ++ RH+
Sbjct: 269 DTLD----------TNGSGYIFLNKRGGFISDSTMRKYFKKILQELNIG-DRTLYSTRHT 317

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTT 295
           FA+ +++ G D+  +  +LGH  ++TT
Sbjct: 318 FASIMIAYGEDIAWVSKMLGHKDIATT 344


>gi|146307138|ref|YP_001187603.1| phage integrase family protein [Pseudomonas mendocina ymp]
 gi|145575339|gb|ABP84871.1| phage integrase family protein [Pseudomonas mendocina ymp]
          Length = 335

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 19/144 (13%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I  +    G R  EA +LTP+ + +   T     K  + R +P+  ++ KA+  Y+    
Sbjct: 188 IARVCLSTGARWGEAQALTPERVRNGMVTF-ANTKSKRTRSIPIDSALEKALHVYFKR-- 244

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
             L  N  L               F R +   +  + LP     H LRH+FA+H +  GG
Sbjct: 245 HGLFTNCML--------------TFSRVLE--KTSIKLPAGQATHVLRHTFASHFVMRGG 288

Query: 279 DLRSIQSILGHFRLSTTQIYTNVN 302
           ++ ++Q ILGH  L+ T  Y +++
Sbjct: 289 NILTLQKILGHTSLAMTMRYAHLS 312


>gi|229079526|ref|ZP_04212065.1| Integrase-recombinase [Bacillus cereus Rock4-2]
 gi|228703805|gb|EEL56252.1| Integrase-recombinase [Bacillus cereus Rock4-2]
          Length = 390

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 65/153 (42%), Gaps = 10/153 (6%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           N  IL  L   G RI E  +   +++  D +  L++ GKGDK+R + +   + + I E  
Sbjct: 218 NYTILLALASTGARIQELCTARVKDLHYDGKYWLKVTGKGDKVRELFISEHLYQCICEMR 277

Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266
                   L    + PLF   RG   N       +  + +   L          TAHT R
Sbjct: 278 RRRGLQTVLEKGDESPLFINQRGSAYNSKTLSNQVTDMIKKTNLKFLLYRENPVTAHTFR 337

Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
           H+FA   +  G  DL  +   LGH  + TT+IY
Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370


>gi|300775106|ref|ZP_07084968.1| integrase [Chryseobacterium gleum ATCC 35910]
 gi|300505846|gb|EFK36982.1| integrase [Chryseobacterium gleum ATCC 35910]
          Length = 308

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 78/187 (41%), Gaps = 42/187 (22%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTL-------RIQGKGDKIRIVPLL---PSVRKA 209
           +Y+    G+RI E  +LT ++I  D   +       RI    D  R   L+   P  + +
Sbjct: 134 VYICLSAGMRIGEVCALTWEDIDTDNGIISINRTIQRIYVIEDGTRRTELILDTPKTKNS 193

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGI----------RGKPLNPGVFQRYIRQLRRYLGLPLS 259
           I E     P   +L   L  F+ I            KP  P  ++ Y + L + L +P  
Sbjct: 194 IRE----IPISKDLLRILKPFKKIVNQSFFVLTNDAKPTEPRTYRSYYKNLMKELKMP-E 248

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRHSFAT  + +  D +++  +LGH  +STT               + +Y   HP
Sbjct: 249 LKFHGLRHSFATRCIESNCDYKTVSVLLGHSNISTT---------------LNLY--VHP 291

Query: 320 SITQKDK 326
           ++ QK K
Sbjct: 292 NMEQKKK 298


>gi|332661864|ref|YP_004451334.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100]
 gi|332337361|gb|AEE54461.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 524

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 73/153 (47%), Gaps = 10/153 (6%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-----QGKGDKIRIVPLLPSVRKAILE 212
            I+ L+  CGLR++E + L  +N    Q+T+ +     + K  + R +PL   + +A+ +
Sbjct: 52  VIILLMLDCGLRVTEVVQLQRKNFNFMQNTVTVASLKKRSKRLRTRTIPLSTRLLEALAD 111

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           Y+             P  +  +   L+  V  + I++    +  P     H LRH+FAT 
Sbjct: 112 YWPRIKDPEPDTYIFPAAKTSKALYLSRVVVWKRIKKYSGGVVHP-----HMLRHTFATR 166

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           ++  G D+R  Q +LGH    TT+IY +V  + 
Sbjct: 167 VVREGNDIRVAQKLLGHNSQLTTEIYLHVEDQE 199


>gi|330814558|ref|YP_004362733.1| Phage integrase family protein [Burkholderia gladioli BSR3]
 gi|327374550|gb|AEA65901.1| Phage integrase family protein [Burkholderia gladioli BSR3]
          Length = 611

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 99/270 (36%), Gaps = 59/270 (21%)

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
           +T    +     L+   +LP  +  +    L D           W  AR  A++ L+   
Sbjct: 352 VTDPKPVKRATKLQVQRALPIDVWSRVRAELADRAEGFGPQGPDWRVAR--ALVLLMGDA 409

Query: 167 GLRISEALS--------LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY---- 214
           GLRI EA++           ++ +     LR+ GKG+K RIVPL     +A+ E++    
Sbjct: 410 GLRIEEAVTAERGGLQWWPAEDEIPATWMLRLIGKGNKERIVPLTEDAVEALREHWQDRG 469

Query: 215 -DLCPFDLNLNIQLPLFRGIRGKPLNPG-----------------------------VFQ 244
            DL     N + +LPL       P   G                                
Sbjct: 470 LDLDALGANAD-RLPLVAPTVVPPTPAGRDKFGVTDTGQVTRVAGYTPRAARRVVTRALG 528

Query: 245 RYIRQL-------RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           R + QL       RR L     T+ H  RH+F T   + G  +  +Q +LGH  L TT I
Sbjct: 529 RLLEQLPDLEESARRQLA---GTSPHAFRHTFGTQSAAAGMAIEVLQQVLGHGSLQTTTI 585

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
           Y N   +     M +   + H  +  +D K
Sbjct: 586 YVNAEQQR----MRQESAKYHARLAARDLK 611


>gi|300924591|ref|ZP_07140553.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|300419222|gb|EFK02533.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
          Length = 334

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 22/143 (15%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +  L    G R SEA  L  + I+ ++ T  ++ K  + R VP+  +V +AI        
Sbjct: 185 VALLCLSTGARWSEACKLRGEQIVHNRVTF-LETKNGRKRTVPISQAVCEAIKTRETGGL 243

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-GLPLSTTAHTLRHSFATHLLSNG 277
           F++                     ++ +   L+R    LP    AH LRH+FA+H + NG
Sbjct: 244 FEVK--------------------YREFCLALKRVKPDLPKGQAAHVLRHTFASHFVMNG 283

Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300
           G++ ++Q ILGH  +  T  Y +
Sbjct: 284 GNIIALQKILGHATIQQTMAYAH 306


>gi|224370500|ref|YP_002604664.1| Phage integrase/recombinase family protein [Desulfobacterium
           autotrophicum HRM2]
 gi|223693217|gb|ACN16500.1| Phage integrase/recombinase family protein [Desulfobacterium
           autotrophicum HRM2]
          Length = 301

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 123/280 (43%), Gaps = 21/280 (7%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           ++ +Y+   R FL FL   + E++     R +++  + AF    + Q    R++   LS 
Sbjct: 22  SVDTYDRAIRTFLDFLGISSPEEL-----RTITHGHVIAFKKFLQDQGRSARTINNRLSA 76

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD-NVLLHTSHETKWID 153
           I S   +L  +++      +N+    K   +  +  E + L  V+   LL++   +K   
Sbjct: 77  ISSLFNHLIDQQVVK----INVAQGVKRMPVNASRVEAKVLAPVEVRNLLNSPDVSKLQG 132

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-----GKGDKIRIVPLLPSVRK 208
            R+ AIL  L+  G R+SE  SL  ++  ++Q    +      GK +++ I   L     
Sbjct: 133 LRDKAILSTLFFTGCRVSEVCSLKVRDFYEEQGFFVLDFWVKGGKRNRMAINQELQITLD 192

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRY---LGLPLSTTAHT 264
             L      P D    + LP+  G +       + +R I  L  +Y   +G+    T H+
Sbjct: 193 QYLTETGHGP-DQASFLFLPVKSGYKALDPKRKLSRRTIDHLFNKYANTIGIA-GITPHS 250

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            R +F T  L N   + ++Q  +GH ++ TTQ+Y    +K
Sbjct: 251 ARATFITQALENNCPIEAVQKTVGHAQIKTTQMYDKRTAK 290


>gi|291529887|emb|CBK95472.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 327

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 122/284 (42%), Gaps = 38/284 (13%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS----KRRTQKIGD 85
           G S+ TL+ Y    +  L  +          + +R +   ++R++++    K ++ K+  
Sbjct: 64  GCSEKTLKYYNATIQAMLTCVG---------KGVRHIVTDDVRSYLTEYQEKNQSSKVTI 114

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            +++R LS   SF  +L+      +S +  +  +K   ++     + +AL L+ +     
Sbjct: 115 DNIRRILS---SFFSWLEDEDYILKSPVRRIHKVKTGTNIKETYTD-EALELMRD----- 165

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
                  + R+ AI+ +L   G+R+ E + L   +I  ++    + GKGDK RIV     
Sbjct: 166 ----SCTELRDLAIIDMLASTGMRVGEMVLLNRADINFNERECVVFGKGDKERIVYFDAR 221

Query: 206 VRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            +  +  Y     D  P  L +++Q P       K L     +  +R+  + LGL     
Sbjct: 222 TKIHLQNYLNSRRDENPA-LFVSLQKP------HKRLQISGIEVRLREYGKRLGLS-KVH 273

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V   N
Sbjct: 274 PHKFRRTLATMAIDKGMPIEQLQQLLGHRRIDTTLQYAMVKQSN 317


>gi|229015121|ref|ZP_04172177.1| Integrase/recombinase [Bacillus mycoides DSM 2048]
 gi|228746174|gb|EEL96121.1| Integrase/recombinase [Bacillus mycoides DSM 2048]
          Length = 330

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 131/286 (45%), Gaps = 32/286 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE------IRAFISKRRTQK 82
           R L   T++ Y  + + FL  L   TE++I +  ++  + TE      +  ++   R  K
Sbjct: 41  RNLRPFTIKYYLNELQAFLNLL---TEQEIDVSILKPYNMTEEHVKENVILYMKNYRGIK 97

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +   S+   L  +++F  +L K+K    + + N++ LK    +    +++Q      N L
Sbjct: 98  VV--SINTRLRALRAFYNFLYKQKHIPRNPMENIKLLKDRKRIIPTFSKEQL-----NKL 150

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVP 201
               +   +   R+  I+ L+   G+RI+E + L+ ++I  + S L I+  K  + R VP
Sbjct: 151 FRQPNLRTFTGVRDYTIMMLMLETGIRINELVGLSVKDIRWEDSLLVIRNAKSYRERQVP 210

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRY-----IRQLRRYLG 255
           +   ++  + +Y  +  +  +      LF  + G  L   G+ QR      + Q++    
Sbjct: 211 IQKDMKSQLKKYIAIRGYVESS----ALFVTVDGTRLTRRGIQQRISIYGNMAQIK---- 262

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             +  + HT RH+FA   +  G ++  +Q+ILGH  +   + Y N+
Sbjct: 263 -DVRCSPHTFRHTFAKLSVQQGANIFELQAILGHTNMEIVRTYVNL 307


>gi|15900773|ref|NP_345377.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae TIGR4]
 gi|111656825|ref|ZP_01407676.1| hypothetical protein SpneT_02001908 [Streptococcus pneumoniae
           TIGR4]
 gi|148988317|ref|ZP_01819764.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP6-BS73]
 gi|148993703|ref|ZP_01823150.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP9-BS68]
 gi|149002427|ref|ZP_01827361.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP14-BS69]
 gi|168490325|ref|ZP_02714524.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae SP195]
 gi|182683810|ref|YP_001835557.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae CGSP14]
 gi|225858687|ref|YP_002740197.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae 70585]
 gi|225861217|ref|YP_002742726.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|237650544|ref|ZP_04524796.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae CCRI 1974]
 gi|237822639|ref|ZP_04598484.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae CCRI 1974M2]
 gi|298229452|ref|ZP_06963133.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254243|ref|ZP_06977829.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503103|ref|YP_003725043.1| phage integrase/recombinase [Streptococcus pneumoniae TCH8431/19A]
 gi|303262774|ref|ZP_07348712.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP14-BS292]
 gi|303267703|ref|ZP_07353526.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS457]
 gi|303270062|ref|ZP_07355780.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS458]
 gi|307127558|ref|YP_003879589.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae 670-6B]
 gi|14972364|gb|AAK75017.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae TIGR4]
 gi|147759364|gb|EDK66356.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP14-BS69]
 gi|147925998|gb|EDK77072.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP6-BS73]
 gi|147927783|gb|EDK78806.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP9-BS68]
 gi|182629144|gb|ACB90092.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CGSP14]
 gi|183571337|gb|EDT91865.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae SP195]
 gi|225720290|gb|ACO16144.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae 70585]
 gi|225727056|gb|ACO22907.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298238698|gb|ADI69829.1| phage integrase/recombinase [Streptococcus pneumoniae TCH8431/19A]
 gi|301794021|emb|CBW36419.1| putative integrase/recombinase [Streptococcus pneumoniae INV104]
 gi|301801716|emb|CBW34422.1| putative integrase/recombinase [Streptococcus pneumoniae INV200]
 gi|302636096|gb|EFL66593.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP14-BS292]
 gi|302640408|gb|EFL70837.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS458]
 gi|302642766|gb|EFL73090.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS457]
 gi|306484620|gb|ADM91489.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae 670-6B]
 gi|332073220|gb|EGI83699.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus
           pneumoniae GA17570]
 gi|332076174|gb|EGI86640.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus
           pneumoniae GA41301]
 gi|332076339|gb|EGI86804.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus
           pneumoniae GA17545]
          Length = 321

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 114/252 (45%), Gaps = 27/252 (10%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRS----LKRSLSGIKSFLKYLKKRKITTESNILNM 116
           +++ QL+  ++R++++  +++K   ++    ++R LS   SF  +L++ +   ++ I  +
Sbjct: 80  ESVTQLTTDDLRSYLANYQSEKDCSKANLDNIRRILS---SFFAWLEQEEYIIKNPIRRI 136

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           + +K   ++     ++    + DN            + R+ AI+ LL   G+R+ E + L
Sbjct: 137 KKIKTEQNVKETYTDEHLEIMRDNCE----------NLRDLAIIDLLASTGMRVGELVQL 186

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI-LEYYDLCPFDLNLNIQLPLFRGIRG 235
              +I  +     + GKG K R  P+    R  I L  Y     +   +    LF  + G
Sbjct: 187 NRSDIDFENRECVVFGKGKKER--PVYFDARTKIHLRNY----LNDRKDSHPALFVTLVG 240

Query: 236 KPLNPGV--FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           K    G+   +  +R+L   LG+      H  R + AT  +  G  +  +Q +LGH ++ 
Sbjct: 241 KVQRLGIAGVEIRLRKLGDKLGIQ-KVHPHKFRRTLATKAIDKGMPIEQVQKLLGHSKID 299

Query: 294 TTQIYTNVNSKN 305
           TT  Y  VN  N
Sbjct: 300 TTLAYAMVNQNN 311


>gi|220918789|ref|YP_002494093.1| integrase family protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956643|gb|ACL67027.1| integrase family protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 392

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 30/166 (18%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----------GKGDKIRIVP 201
           +D R  A + L    GLR  E ++L   ++    + + I+           KG K R+VP
Sbjct: 208 LDPRILAAVLLGGNAGLRAGEVVALELPDVRRANARITIERQAWRGVVDTPKGGKGRVVP 267

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR------GKPLNPGVFQRYIRQLRRYLG 255
           +  +++ A+     L              RG R      G  L   V + +++  +R  G
Sbjct: 268 MTDALKAALAAVRHL--------------RGARVLVQDDGSDLTAKVLRGWMKSAQRLAG 313

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           L  +   H LRH+F +HL   G   + IQ + GH  LSTT  Y ++
Sbjct: 314 LRPTGNFHILRHTFCSHLAMRGAPAKVIQELAGHTHLSTTMRYMHL 359


>gi|149911917|ref|ZP_01900516.1| Hypothetical bacteriophage integrase [Moritella sp. PE36]
 gi|149805010|gb|EDM65038.1| Hypothetical bacteriophage integrase [Moritella sp. PE36]
          Length = 322

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 57/143 (39%), Gaps = 20/143 (13%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +  L    G R SEA  L   +I+  + T     K  K R VP+ P     I        
Sbjct: 183 VAKLCLSTGARWSEAAELRGNDIIHGRVTFN-DTKNGKNRTVPITPEFMNEI-------- 233

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
                        G  G+  N    + Y     +   LP     H LRH+FA+H + NGG
Sbjct: 234 -----------HNGKTGRLFNSSYMEFYDVLKAQGFDLPKGQATHVLRHTFASHFMMNGG 282

Query: 279 DLRSIQSILGHFRLSTTQIYTNV 301
           ++ ++Q ILGH  +  T  Y ++
Sbjct: 283 NILTLQKILGHSTIMQTMTYAHL 305


>gi|262382300|ref|ZP_06075437.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262295178|gb|EEY83109.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 408

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 15/150 (10%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQS----TLRIQGKGDKIRIVPLLPSVRKAILE 212
              ++ +Y  GL   +  +L P+++ +D +     ++ + K + I  +PLL S+ K ILE
Sbjct: 251 DVFIFCVYT-GLAFIDVYNLRPEHVSEDSNGNLWIVKPREKTNNICNIPLL-SIPKQILE 308

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
            Y   P+ ++    LP+       P N  +   Y++++    G+  + T HT RHSFA+ 
Sbjct: 309 KYKDNPYCMDKGTLLPV-------PCNQKM-NSYLKEIADLCGIKKNLTTHTARHSFASV 360

Query: 273 L-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + L+N   L ++  +LGH     TQ Y  V
Sbjct: 361 IALANNVSLPNVAKMLGHSSTRMTQHYAKV 390


>gi|260599046|ref|YP_003211617.1| Integrase [Cronobacter turicensis z3032]
 gi|260218223|emb|CBA33120.1| Integrase [Cronobacter turicensis z3032]
          Length = 339

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 25/146 (17%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I  +    G R SEA +L    +   + T   + KG K R VP+   +       YD  P
Sbjct: 199 IAKICLATGARWSEAENLQGHQLSKYRITY-TKTKGKKNRTVPISQDL-------YDELP 250

Query: 219 FDLNLNIQLPLFRGIRGKPLNPG--VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
            +             RGK   P    F+R ++  R  + LP     H LRH+FA+H + N
Sbjct: 251 KN-------------RGKLFTPCRKAFERAVK--RAGIDLPEGQCTHVLRHTFASHFMMN 295

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVN 302
           GG++  ++ ILGH  +  T IY + +
Sbjct: 296 GGNILVLKEILGHADIKMTMIYAHFS 321


>gi|124004365|ref|ZP_01689211.1| transposase, putative [Microscilla marina ATCC 23134]
 gi|123990435|gb|EAY29934.1| transposase, putative [Microscilla marina ATCC 23134]
          Length = 420

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 71/145 (48%), Gaps = 14/145 (9%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
            ++ C  G   S+ + L P+++++       ++ + K   I  +PLLP  R  IL+ Y  
Sbjct: 267 FVFQCFTGFAFSDIVDLKPEHLIEQGERTWIIKERVKSSTIAKMPLLPQAR-FILDKYKD 325

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
            P  L+  + +P+        +  G +  Y++ +  Y+G+    T+H  R +FAT + + 
Sbjct: 326 DPVCLSKGVLIPV--------ITSGNYNTYLKMIAEYVGIDKHLTSHVGRRTFATLVYNA 377

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNV 301
           G D   ++ + GH   + T+IY ++
Sbjct: 378 GTDRSKLKEMTGHTNEAITEIYASL 402


>gi|241889568|ref|ZP_04776866.1| tyrosine recombinase XerC [Gemella haemolysans ATCC 10379]
 gi|241863190|gb|EER67574.1| tyrosine recombinase XerC [Gemella haemolysans ATCC 10379]
          Length = 348

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 5/152 (3%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
           AR+ AIL L    G+R++E  +L  ++I    S + +  KG+K+  V +  S    + EY
Sbjct: 190 ARDLAILTLFLKSGIRVNELANLKVKDIDFLNSEINVIRKGNKVDTVIITKSALDRLNEY 249

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                F LN    + + +   G  L+    Q+ + +      +P+S   H LRHS+ T L
Sbjct: 250 ITSLSFKLNREDYVFISKNKTG--LSIRAIQKLVMKYTDTFNVPMS--PHKLRHSYGTKL 305

Query: 274 -LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            L   G++  I + +GH    T+ +Y N + K
Sbjct: 306 ALKTNGNIPIIMTQMGHSNSDTSMLYINESKK 337


>gi|225420398|ref|ZP_03762701.1| hypothetical protein CLOSTASPAR_06743 [Clostridium asparagiforme
           DSM 15981]
 gi|225040961|gb|EEG51207.1| hypothetical protein CLOSTASPAR_06743 [Clostridium asparagiforme
           DSM 15981]
          Length = 288

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 81/174 (46%), Gaps = 16/174 (9%)

Query: 133 QALTLVDNVLLHTSHETK----WIDARNSA--ILYLLYGCGLRISEALSLTPQNIMDDQS 186
           Q  + +D+V+    +E      W D + +   I+  +   G+R+SE ++L    + D Q 
Sbjct: 105 QQKSFIDHVISQADYEYLKNRLWEDEQYTFYFIVRFIAATGVRVSELVALV---LPDVQV 161

Query: 187 TLR-IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             R +  KG+K R + +  S++K  L++              PLF    G+P+     ++
Sbjct: 162 GYRDLYSKGNKTRRIYIPSSLQKMCLDW-----LAAEGRRDGPLFISRLGRPMTVSGIRK 216

Query: 246 YIRQLR-RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            ++    RY   P     H+ RH FA + + NGGD+  +  +LGH  + TT IY
Sbjct: 217 QLKTFAIRYHLDPEVMYPHSFRHRFAKNFIENGGDIAFLSDLLGHDSIETTHIY 270


>gi|218262162|ref|ZP_03476721.1| hypothetical protein PRABACTJOHN_02394 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223568|gb|EEC96218.1| hypothetical protein PRABACTJOHN_02394 [Parabacteroides johnsonii
           DSM 18315]
          Length = 406

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 115/251 (45%), Gaps = 39/251 (15%)

Query: 78  RRTQKIGDRSLKRSLSG--IKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNE--- 131
           RR  K+ D  L R ++G  ++ F  YLK  K   ++ ++  M+  KK  +L  A NE   
Sbjct: 149 RRDYKVDDMLL-REVNGELVRKFDLYLKTEKHCAQNTVIRYMKCFKKVINLAIA-NEWLT 206

Query: 132 ---------------KQALTLVD-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
                          KQ L+  + N +       + ++      ++ +Y  GL   +  +
Sbjct: 207 KNPFAGIKFHEVEVNKQFLSQAEINRIWQKEFRIERLELVRDVFIFCVYT-GLAFIDVYN 265

Query: 176 LTPQNIMDDQS----TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           L P++I +D +     ++ + K + +  +PLL S+ K ILE Y   P+ ++    LP+  
Sbjct: 266 LRPEHISEDSNGNLWIVKPREKTNNLCNIPLL-SIPKQILEKYKDNPYCMDKGTLLPV-- 322

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHF 290
                P N  +   Y++++    G+  + T HT RHSFA+ + L+N   L ++  +LGH 
Sbjct: 323 -----PCNQKM-NSYLKEIADLCGIKKNLTTHTARHSFASVIALANNVSLPNVAKMLGHS 376

Query: 291 RLSTTQIYTNV 301
               TQ Y  V
Sbjct: 377 STRMTQHYAKV 387


>gi|57506012|ref|ZP_00371936.1| site-specific recombinase, phage integrase family [Campylobacter
           upsaliensis RM3195]
 gi|57015812|gb|EAL52602.1| site-specific recombinase, phage integrase family [Campylobacter
           upsaliensis RM3195]
          Length = 314

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 87/199 (43%), Gaps = 20/199 (10%)

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
           LN RN K+   L   LN+ +   L++ +      +  +   RN+ ++ L+   GLRISEA
Sbjct: 118 LNTRNEKREEKLE-YLNDDEIQRLINVLEQQKIKKDDYASFRNAFLIKLMLYAGLRISEA 176

Query: 174 LSLTPQNIMDDQSTL---RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
           L +   +  +D+  +   RI  KG K +            L+Y     F  +L  Q  + 
Sbjct: 177 LRVRLCDFSEDEEDMLKIRIFAKGAKEQFAYAKKDYIDDELDY-----FKEHLKEQDYIM 231

Query: 231 RGIRGKPLNPG-----VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
           +   GK LN       V + Y + L    GL      H LRHS A  L S   +L  IQ 
Sbjct: 232 QTNTGKLLNRSNAFIIVNRIYAKALINKKGL------HLLRHSLAMKLTSQNINLVVIQK 285

Query: 286 ILGHFRLSTTQIYTNVNSK 304
           IL H  + TT IY   NS+
Sbjct: 286 ILRHTSMQTTTIYAKANSE 304


>gi|123441995|ref|YP_001005978.1| P2-like phage integrase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088956|emb|CAL11767.1| P2-like phage integrase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 327

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 22/141 (15%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           L    G R  E   L    I+ ++ T  +  K  K R VP+           ++LC    
Sbjct: 187 LCLATGARWGEVAKLRRDEIIGNKVTY-LDTKNSKNRTVPI----------SHELCE--- 232

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL--GLPLSTTAHTLRHSFATHLLSNGGD 279
                  L  GI+  PL   +   Y+R   + +  GLP     H LRH+FA+H + NGG+
Sbjct: 233 ------QLTDGIKTGPLFKSLNYPYVRICVKEVAPGLPAGQAVHVLRHTFASHFMMNGGN 286

Query: 280 LRSIQSILGHFRLSTTQIYTN 300
           + ++Q ILGH  +  T  Y +
Sbjct: 287 ILALQKILGHSNILQTMNYAH 307


>gi|193068261|ref|ZP_03049225.1| integrase [Escherichia coli E110019]
 gi|192958540|gb|EDV88979.1| integrase [Escherichia coli E110019]
          Length = 334

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 22/143 (15%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +  L    G R SEA  L  + I+ ++ T  ++ K  + R VP+  +V +AI        
Sbjct: 185 VALLCLSTGARWSEACKLRGEQIVHNRVTF-LETKNGRKRTVPISQAVCEAIKTRETGGL 243

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-GLPLSTTAHTLRHSFATHLLSNG 277
           F++                     ++ +   L+R    LP    AH LRH+FA+H + NG
Sbjct: 244 FEVK--------------------YREFCLALKRVKPDLPKGQAAHVLRHTFASHFVMNG 283

Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300
           G++ ++Q ILGH  +  T  Y +
Sbjct: 284 GNIIALQKILGHATIQQTMAYAH 306


>gi|124004236|ref|ZP_01689082.1| transposase, putative [Microscilla marina ATCC 23134]
 gi|123990306|gb|EAY29805.1| transposase, putative [Microscilla marina ATCC 23134]
          Length = 420

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 71/145 (48%), Gaps = 14/145 (9%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
            ++ C  G   S+ + L P+++++       ++ + K   I  +PLLP  R  IL+ Y  
Sbjct: 267 FVFQCFTGFAFSDIVDLKPEHLIEQGERTWIIKERVKSSTIAKMPLLPQAR-FILDKYKD 325

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
            P  L+  + +P+        +  G +  Y++ +  Y+G+    T+H  R +FAT + + 
Sbjct: 326 DPVCLSKGVLIPV--------ITSGNYNTYLKMIAEYVGIDKHLTSHVGRRTFATLVYNA 377

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNV 301
           G D   ++ + GH   + T+IY ++
Sbjct: 378 GTDRSKLKEMTGHTNEAITEIYASL 402


>gi|325696149|gb|EGD38040.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK160]
 gi|328946727|gb|EGG40865.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK1087]
          Length = 328

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 110/251 (43%), Gaps = 27/251 (10%)

Query: 62  TIRQLSYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
            IR L+  ++R +++    +R++ K+   +++R  S   SF  +L+      +S +  + 
Sbjct: 88  AIRDLTTGDLRTYLAHYQQERKSSKVTIDNMRRIFS---SFFGWLEDEDYILKSPVRRIH 144

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
            +K   ++    +++    L D             + R+ A++ LL   G+R+ E + L 
Sbjct: 145 KIKTDKTIKETFSDEGLELLRD----------ACDEIRDLAMIDLLASTGMRVGELVRLN 194

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD---LNLNIQLPLFRGIR 234
            ++I   +    + GKG+  RIV      +  ++ Y D    D   L +++  P  R + 
Sbjct: 195 REDINFYERECLVFGKGNSERIVYFDARTKIHLINYLDNRQDDNPALFVSLSFPYNRLLI 254

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G     GV  R +RQ+     L      H  R + AT  +  G  +  +Q +LGH ++ T
Sbjct: 255 G-----GVETR-LRQIGEKADLN-KVHPHKFRRTLATRAIDKGMPIEQVQHLLGHVKIDT 307

Query: 295 TQIYTNVNSKN 305
           T  Y  VN  N
Sbjct: 308 TMHYAMVNQAN 318


>gi|281424449|ref|ZP_06255362.1| putative integrase [Prevotella oris F0302]
 gi|281401435|gb|EFB32266.1| putative integrase [Prevotella oris F0302]
          Length = 407

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 17/167 (10%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIR 198
           L+   ++ +  + R + IL L   CGLR  +   LT +NI      L+ +    KG    
Sbjct: 240 LIQCHYDNENPNVRRAFILCLY--CGLRFCDVKDLTYKNIDYTNHLLKFEQNKTKGHSAN 297

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
              ++P +   +L      P DLN +I  LP +              + +++  +  G+ 
Sbjct: 298 SGVIIP-LNDGLLSLIGEAPEDLNSSIFNLPSYESC----------SKSVKRWVKRAGIN 346

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              + H  RHSFA ++L+NG +++++ S+LGH  L  T+ YT    K
Sbjct: 347 KHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|189468256|ref|ZP_03017041.1| hypothetical protein BACINT_04652 [Bacteroides intestinalis DSM
           17393]
 gi|189436520|gb|EDV05505.1| hypothetical protein BACINT_04652 [Bacteroides intestinalis DSM
           17393]
          Length = 398

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 74/148 (50%), Gaps = 16/148 (10%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGK---GDKIRIVPLLPSVRKAILEY 213
           A L+  Y  G+R S+ +++ P NI++  Q T  I      G ++R+   L    K IL  
Sbjct: 241 AFLFCCYA-GMRYSDFVNMKPDNIVEMHQETWLIYKSIKTGTEVRLPLYLLFSGKGIL-- 297

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
             L  +  NL      F  +R    N  V +  I  + R  G+    + HT RH+ AT L
Sbjct: 298 -ILNKYQANLQD----FFHLRD---NSNVNKELII-IARLAGVAKKVSFHTARHTNATLL 348

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + NG ++ ++Q +LGH  + TTQIYTNV
Sbjct: 349 IYNGVNITTVQKLLGHKSVKTTQIYTNV 376


>gi|323973095|gb|EGB68288.1| phage integrase [Escherichia coli TA007]
          Length = 334

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 22/143 (15%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +  L    G R SEA  L  + I+ ++ T  ++ K  + R VP+  +V +AI        
Sbjct: 185 VALLCLSTGARWSEACKLRGEQIVHNRVTF-LETKNGRKRTVPISQAVCEAIKTKETGNL 243

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-GLPLSTTAHTLRHSFATHLLSNG 277
           F++                     ++ +   L+R    LP    AH LRH+FA+H + NG
Sbjct: 244 FEVK--------------------YREFCLMLKRVKPDLPKGQAAHVLRHTFASHFVMNG 283

Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300
           G++ ++Q ILGH  +  T  Y +
Sbjct: 284 GNIIALQKILGHATIQQTMAYAH 306


>gi|187251397|ref|YP_001875879.1| integrase family protein [Elusimicrobium minutum Pei191]
 gi|186971557|gb|ACC98542.1| Integrase family protein [Elusimicrobium minutum Pei191]
          Length = 355

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 13/154 (8%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI------RIVPLLPSV 206
           D+   A + L    G+R+ E       ++  D+  + +Q K + I      R +PLL  +
Sbjct: 190 DSMLKAAIMLGSYAGMRVEEVFQAEWTDVNWDRGVIYVQKKENYIPKDYEDREIPLLKPL 249

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           R+ +L+           N  +  F+     P  P V     R+L   LG+P  T  H LR
Sbjct: 250 RQYLLKNKGSSK-----NTHIVAFKD-GSSPKTPEVISALFRRLAHELGIPY-TKFHLLR 302

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           H+F +     G D  SIQ  +GH +L TT IY +
Sbjct: 303 HNFGSFSAEQGIDPFSIQKAMGHSKLETTMIYIH 336


>gi|34763511|ref|ZP_00144452.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27886817|gb|EAA23949.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 328

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 38/294 (12%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTI----RQLSYTEIRAFISKRRTQKIGDRS 87
           S+ T++ Y    + FL F+ +  E   +I  +    + +   ++ A+I         DR 
Sbjct: 33  SEKTIKDYMFHLKDFLHFV-YDGENDFSISEVIPLMQDIEKEDVEAYI----VHLFEDRQ 87

Query: 88  LKRS-----LSGIKSFLKYLKKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLV 138
           LK++     LS +KS  K L+ + +      + +    RN++  N L  ++++ + +   
Sbjct: 88  LKKTSVNTILSALKSLYKELESKGLKNPVKYIKLFKVNRNIE--NILKVSIDDIRKII-- 143

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLR-IQGKGD 195
              L     E K+   RN  ILY L+  G+R  E L+L  ++ +  +D+   + I+ K  
Sbjct: 144 --GLYKIDSEKKY---RNITILYTLFYTGMRSKELLTLQFKHYLKREDEYFFKLIETKSG 198

Query: 196 KIRIVPLLPSVRKAILEY--YDLCPFDLNLNI--QLPLFRG--IRGKPLNPGVFQRYIRQ 249
           K    P+  S+ K + EY  Y +  + L+L    +  +F    +   PL+       I+ 
Sbjct: 199 KDVYKPIHKSLVKKLEEYKKYLISMYSLDLKDLDEKYIFSTSILDNSPLSYRSLNAIIQD 258

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           + + +G  +S   H +RH+ AT L  +G D+  I+  LGH     T++Y N  S
Sbjct: 259 MGKLIGKDIS--PHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARS 310


>gi|227513195|ref|ZP_03943244.1| phage integrase family site specific recombinase [Lactobacillus
           buchneri ATCC 11577]
 gi|227083576|gb|EEI18888.1| phage integrase family site specific recombinase [Lactobacillus
           buchneri ATCC 11577]
          Length = 385

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 3/71 (4%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G P+ P   +    ++++ LG P +   H+LRH+ AT LL NG +++ IQ+ LGH R++T
Sbjct: 297 GSPVTPNTIKYQCDRIQKELGFPFN--FHSLRHTHATMLLENGANIKDIQARLGHSRIAT 354

Query: 295 T-QIYTNVNSK 304
           T   Y++V  K
Sbjct: 355 TMDTYSHVTHK 365


>gi|148381303|ref|YP_001255844.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 3502]
 gi|153933633|ref|YP_001385681.1| phage integrase family site specific recombinase [Clostridium
           botulinum A str. ATCC 19397]
 gi|153937845|ref|YP_001389087.1| phage integrase family site specific recombinase [Clostridium
           botulinum A str. Hall]
 gi|148290787|emb|CAL84921.1| putative integrase/recombinase [Clostridium botulinum A str. ATCC
           3502]
 gi|152929677|gb|ABS35177.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 19397]
 gi|152933759|gb|ABS39258.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. Hall]
          Length = 199

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 92/196 (46%), Gaps = 12/196 (6%)

Query: 122 SNSLPRALNEKQALTLVDNVLL-HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           SN+  + L +++A+ L + ++    SH       R+ A+  + Y CGLR SE   +   +
Sbjct: 5   SNNKMKYLTQQEAIRLFNAIIFSDNSHA-----VRDLALFRVAYRCGLRASEISLIKLDD 59

Query: 181 IMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
              D+  L  +  KG     + L  + +KA+  Y  +  + ++ N +  LF+  +  P++
Sbjct: 60  YNADKGDLYCKRLKGSNNNTIRLDATTKKALDTY--IRDYKISCNSE-TLFKSQKNNPIS 116

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAH--TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
                  +++  +   +   +  H  TL+H+ A HL  +  D++ +Q  LGH  +S T+I
Sbjct: 117 RQTLDYLMKKYCKIANISDKSKHHFHTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEI 176

Query: 298 YTNVNSKNGGDWMMEI 313
           Y    +K      M++
Sbjct: 177 YFQFTTKQQEKMYMKL 192


>gi|194436337|ref|ZP_03068439.1| integrase [Escherichia coli 101-1]
 gi|283787274|ref|YP_003367139.1| phage integrase [Citrobacter rodentium ICC168]
 gi|194425065|gb|EDX41050.1| integrase [Escherichia coli 101-1]
 gi|282950728|emb|CBG90404.1| phage integrase [Citrobacter rodentium ICC168]
          Length = 334

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 40/152 (26%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI-------- 210
           +  L    G R SEA  L  + I+ ++ T  ++ K  + R VP+  +V +AI        
Sbjct: 185 VALLCLSTGARWSEACKLRGEQIVHNRVTF-LETKNGRKRTVPISQAVCEAIRTRETGNL 243

Query: 211 --LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
             ++Y + C   L L          R KP                  LP    AH LRH+
Sbjct: 244 FEVKYREFC---LALK---------RVKP-----------------DLPKGQAAHVLRHT 274

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           FA+H + NGG++ ++Q ILGH  +  T  Y +
Sbjct: 275 FASHFVMNGGNIIALQKILGHATIQQTMAYAH 306


>gi|146304382|ref|YP_001191698.1| phage integrase family protein [Metallosphaera sedula DSM 5348]
 gi|145702632|gb|ABP95774.1| phage integrase family protein [Metallosphaera sedula DSM 5348]
          Length = 286

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 112/257 (43%), Gaps = 44/257 (17%)

Query: 84  GDRSLKRSLSGIKSFLKYLKK--RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
           G  ++K   + I+ FL+++KK  R +TT+  I  + +L       R ++++     + + 
Sbjct: 28  GQGTIKLYSTAIQDFLQFVKKDPRSVTTQDVIDWIGSLNSRKGRSRVVDKRGRSATIRSY 87

Query: 142 LLHTSHETKWIDA--------------------------------RNSAILYLLYGCGLR 169
           ++      KW+                                  R+  I+ LL   GLR
Sbjct: 88  VIAVRRFLKWLGVNVKPPVPRIRSPERMALREEDIVALLSACRRLRDKVIVSLLVDTGLR 147

Query: 170 ISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
            SE LSL   ++  ++  +R+ + K  + RIV    S    +L  Y     D   +   P
Sbjct: 148 SSELLSLRRSDVDLERMLIRVRETKNGEERIV-FFTSRTATLLRQYLRKTQDKESD-DAP 205

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LF       L+     + I++L R  GL      H LRH+FAT+ +  G  L ++Q ++G
Sbjct: 206 LFN------LSYQALYKLIKRLGRKTGLTW-LRPHVLRHTFATNAIRRGVPLPAVQRLMG 258

Query: 289 HFRLSTTQIYTNVNSKN 305
           H  + TTQIYT++ +++
Sbjct: 259 HKDIKTTQIYTHLVTED 275


>gi|284924596|emb|CBG27770.1| site-specific recombinase [Escherichia coli]
          Length = 268

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 52/226 (23%)

Query: 121 KSNSLPRALNEKQALTLVDNVLLHT-------SHETKWI-----DARNSAILYLLYGCGL 168
           +  SLP A++   AL L    ++H        + E   +     D R   +L  L+  G 
Sbjct: 22  QPASLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPDLRRKMLLATLWNTGA 81

Query: 169 RISEAL-------SLTPQNIMDDQSTL--------RIQGK---GDKI-RIVPLLPSVRKA 209
           RI+EAL       SLTP       +TL        R  G+   G +  R+VPL  S   +
Sbjct: 82  RINEALALTRGDFSLTPPYPFVQLATLKQRTEKAARTAGRTPAGQQTHRLVPLSDSWYVS 141

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGLPLSTTA----- 262
            L+        +   +++PL R  +  G+     +++   R +R ++G  ++T A     
Sbjct: 142 QLQ-------TMVATLKIPLERRNKRTGRTEKARIWEVTDRTVRIWIGEAVATAAADGVT 194

Query: 263 -------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                  HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 195 FSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240


>gi|218704195|ref|YP_002411714.1| Integrase from bacteriophage origin [Escherichia coli UMN026]
 gi|218431292|emb|CAR12170.1| Integrase from bacteriophage origin [Escherichia coli UMN026]
          Length = 351

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 24/144 (16%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           ++ +    G R +EA +L    I   + T  I+ KG + R +PL                
Sbjct: 201 VVKICLATGARWNEAATLKSSQIAGGKVTF-IKTKGKRNRTIPL---------------- 243

Query: 219 FDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSN 276
            D  L  +LP  +G +  KP     +  +   L R  + LP     H LRH+FA+H + N
Sbjct: 244 -DDELLAELPETKGALFPKP----CYNAFRSALERAGIELPAGQLTHVLRHTFASHFMMN 298

Query: 277 GGDLRSIQSILGHFRLSTTQIYTN 300
           GG++  +Q ILGH  ++ T  Y +
Sbjct: 299 GGNILVLQKILGHADITMTMRYAH 322


>gi|154495043|ref|ZP_02034048.1| hypothetical protein PARMER_04089 [Parabacteroides merdae ATCC
           43184]
 gi|154085593|gb|EDN84638.1| hypothetical protein PARMER_04089 [Parabacteroides merdae ATCC
           43184]
          Length = 392

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 54/166 (32%)

Query: 162 LLYGC--GLRISEALSLTPQN--IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            L+ C  GLR S+ +++ P N  ++DD+  L             +  SV+          
Sbjct: 240 FLFSCYTGLRFSDIVNIRPDNFHLIDDKLWL-------------VYSSVKT--------- 277

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-GLPLSTTA-------------- 262
               ++N++LPLF    GK L   V++RY ++  R L G+ +S  +              
Sbjct: 278 ----DVNVRLPLFLLFDGKAL--AVYERYCKRYSRTLFGVSVSANSNVNKQLKRICRLAE 331

Query: 263 -------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                  H  RH+ AT LL NG ++ ++Q +LGH  + TT+IY+++
Sbjct: 332 IDKRLSFHMARHTNATLLLYNGANITTVQKLLGHKSVRTTEIYSDI 377


>gi|317505107|ref|ZP_07963052.1| integrase [Prevotella salivae DSM 15606]
 gi|315663771|gb|EFV03493.1| integrase [Prevotella salivae DSM 15606]
          Length = 391

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 17/157 (10%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MD-DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
            L+ C  GL   +  +LT  NI  MD  Q  +  + K D +  + LL  + K I++ Y  
Sbjct: 228 FLFSCFTGLAYVDVANLTADNIITMDGKQWIVTARKKTDTLSHILLL-DIPKMIIKKYAG 286

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
           C  +  L   +P+    R           Y++++    G+  + T H  RH+FAT +L+ 
Sbjct: 287 CAKNGRL---IPILSNQR--------MNSYLKEIADVCGINKNLTFHMARHTFATMMLTK 335

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           G  + S+  +LGH  ++TTQ+Y  + +K   + M+ +
Sbjct: 336 GVPVESVSKMLGHSSITTTQLYARITNKKIENDMLAV 372


>gi|228990730|ref|ZP_04150695.1| Tn554-related, transposase A [Bacillus pseudomycoides DSM 12442]
 gi|228769256|gb|EEM17854.1| Tn554-related, transposase A [Bacillus pseudomycoides DSM 12442]
          Length = 379

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 101/215 (46%), Gaps = 31/215 (14%)

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
           KSFL ++ + K       L+MRN+ K    PR   +  +   V  VL  T+      + R
Sbjct: 148 KSFLHHINQDK-------LSMRNVLKVKE-PRKRVQTLSKEQVKQVLAATT------NIR 193

Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQ-------GKGDKIRIVPLLPSVR 207
           ++ ++ LL+  GLRI E LSL  ++     Q   RI+         G K++       V 
Sbjct: 194 DTFLIQLLFETGLRIGETLSLFLEDFKFSHQKGHRIRLTDRGELENGAKLKTGEREIFVS 253

Query: 208 KAILEYYDLCPFDL--NLNIQLP-LFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLST 260
           + +++ YD   +D+   L+++   +F  +RGK    P+  G  +   ++LR+  G+ +  
Sbjct: 254 QDLMDLYDDYMYDVIDELDVETNFVFVKLRGKNMGRPMTYGDVEALFKRLRQKTGIDVH- 312

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             H  RH+ AT       D++ +Q  LGH ++ TT
Sbjct: 313 -PHLFRHTHATMYYQETKDIKQVQERLGHSQIQTT 346


>gi|149921212|ref|ZP_01909669.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149817983|gb|EDM77443.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 401

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 23/158 (14%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQ----------GKGDKIRIVPLLPSVR 207
           I+ L+   G+R  E  +L   +I    + T+R+Q           K  K R +PL P + 
Sbjct: 209 IVLLMGDAGMRQGEIRALHWSDIRKHPEPTIRVQRTRFKADEYAPKSKKGRSIPLSPRLV 268

Query: 208 KAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            A+  L     CP  ++            G+PL P + +  I +  R  G+  +  +H L
Sbjct: 269 AALEALPRRRGCPHVIHEA----------GEPLTPKLVRGRIVRCERAAGMAETGLSHKL 318

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           RH+FAT L++ G  L  I+ +LGH  L TTQ Y +  S
Sbjct: 319 RHTFATRLVAAGVPLLVIKELLGHADLRTTQRYLHTVS 356


>gi|77412574|ref|ZP_00788864.1| prophage LambdaSa2, site-specific recombinase, phage integrase
           family [Streptococcus agalactiae CJB111]
 gi|77161376|gb|EAO72397.1| prophage LambdaSa2, site-specific recombinase, phage integrase
           family [Streptococcus agalactiae CJB111]
          Length = 263

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 34/166 (20%)

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--------GKG-- 194
           TS E K+   ++   +YL+   GLR SEA+ LT  +I  D+  L +          KG  
Sbjct: 92  TSKEVKY---KSHFCIYLIATTGLRFSEAMGLTWSDIDRDELLLHVNKTYKVFGSDKGFQ 148

Query: 195 -----DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
                  IR VP+  +  K + +Y       L    +  +F GI    +N        + 
Sbjct: 149 PTKNKHSIRYVPINNTTIKLLDQY------RLLFKTETRIFEGISNTAVN--------KT 194

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           L++ +G  +    H+LRH++ +HL+S G DL +I  I+GH  L+ T
Sbjct: 195 LKKLVGRNIHI--HSLRHTYVSHLISEGIDLFAISKIVGHKDLNIT 238


>gi|253565833|ref|ZP_04843287.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251944937|gb|EES85375.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 408

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 15/150 (10%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQS----TLRIQGKGDKIRIVPLLPSVRKAILE 212
              ++ +Y  GL   +  +L P++I +D +     ++ + K + +  +PLL S+ K ILE
Sbjct: 251 DVFIFCVYT-GLAFIDVYNLRPEHISEDSNGNLWIVKPREKTNNLCNIPLL-SISKQILE 308

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
            Y   P+ ++    LP+       P N  +   Y++++    G+  + T HT RHSFA+ 
Sbjct: 309 KYKDNPYCMDKGTLLPV-------PCNQKM-NSYLKEIADLCGIKKNLTTHTARHSFASV 360

Query: 273 L-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + L+N   L ++  +LGH     TQ Y  V
Sbjct: 361 IALANNVSLPNVAKMLGHSSTRMTQHYAKV 390


>gi|323184105|gb|EFZ69483.1| resolvase [Escherichia coli 1357]
          Length = 226

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 40/182 (21%)

Query: 153 DARNSAILYLLYGCGLRISEALSLT-------PQNIMDDQSTL------------RIQGK 193
           D R   +L  L+  G RI+EAL+LT       P       +TL            R+   
Sbjct: 24  DLRRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRMPAG 83

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR 251
               R+VPL  S   + L+        +   +++P+ R  R  G+     +++   R +R
Sbjct: 84  QQTHRLVPLSDSWYVSQLQ-------TMVATLKIPMERRNRRTGRTEKARIWEVTDRTVR 136

Query: 252 RYLG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            ++G              +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT
Sbjct: 137 TWIGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYT 196

Query: 300 NV 301
            V
Sbjct: 197 KV 198


>gi|317123939|ref|YP_004098051.1| integrase [Intrasporangium calvum DSM 43043]
 gi|317126599|ref|YP_004100711.1| integrase [Intrasporangium calvum DSM 43043]
 gi|315588027|gb|ADU47324.1| integrase family protein [Intrasporangium calvum DSM 43043]
 gi|315590687|gb|ADU49984.1| integrase family protein [Intrasporangium calvum DSM 43043]
          Length = 366

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 78/175 (44%), Gaps = 25/175 (14%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDD---QSTLRIQ------GKGDKIRIVPLLP 204
           AR+     L    GLRI+E + L   +   D      L ++      G+G KIRIVP + 
Sbjct: 169 ARDYLAASLWRRVGLRINETVMLDIGDWHPDLGAHGKLHVRHGKGSRGRGAKIRIVPAID 228

Query: 205 SVRKAILEYYDLCPF-----DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG---- 255
            V  A+LE++ L        D   +   PL    R   +     +     LR  LG    
Sbjct: 229 EV-DALLEWW-LTDVRHQFGDDADDPSAPLLPSERRDAMTGHATRIGAEALRAGLGHAVQ 286

Query: 256 --LPLST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             LP  T   T H LRH  A+HL   G  L++IQ ++GH  LSTT  Y +V+S +
Sbjct: 287 AWLPTWTGRLTPHVLRHYCASHLYQQGMSLKAIQELMGHSWLSTTTQYIHVHSTH 341


>gi|29349430|ref|NP_812933.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341339|gb|AAO79127.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 409

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 96/192 (50%), Gaps = 26/192 (13%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLT 177
           KK+ + PRAL+ +++   + +V +  ++    I AR+      L+GC  G+  ++ +S+T
Sbjct: 217 KKTETTPRALS-RESFEKIRDVEI-PAYRKSHILARD----MFLFGCYTGVCYADVVSIT 270

Query: 178 PQNIMDDQST---LRIQGKGDKIR-IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
            +N+  D+     L+ + K +++R  V LLP     I +Y+       + +   PL    
Sbjct: 271 HENLYTDEDGALWLKYRRKKNELRACVKLLPEAIALIEKYHSE-----DRDTLFPL---- 321

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRL 292
               L+    +R+++ L    G+      H  RHSFA+ + L  G  + +I  +LGH  +
Sbjct: 322 ----LHWSNLRRHMKALAALAGIKDDLCYHQARHSFASLITLEAGVPIETISRMLGHSDI 377

Query: 293 STTQIYTNVNSK 304
           STTQ+Y  V+ K
Sbjct: 378 STTQVYARVSPK 389


>gi|261879822|ref|ZP_06006249.1| integrase [Prevotella bergensis DSM 17361]
 gi|270333480|gb|EFA44266.1| integrase [Prevotella bergensis DSM 17361]
          Length = 407

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 14/159 (8%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            ++ C  GL   +  +LTP NI  +DD+  +  + +   +    LL  + K I+  Y   
Sbjct: 249 FIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPKNIIAKYSHK 308

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            +         LF  +  +  N      Y++++    G+  + T H  RH+FAT  LS G
Sbjct: 309 TYR-----DGKLFPILTNQKTNA-----YLKEIADLCGIKKNLTFHLARHTFATMSLSKG 358

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + S+  +LGH  + TTQIY  + +K     M ++ D+
Sbjct: 359 VPMESVSKMLGHTNIKTTQIYARITNKKVEHDMEQLADK 397


>gi|209518165|ref|ZP_03266993.1| integrase family protein [Burkholderia sp. H160]
 gi|209501372|gb|EEA01400.1| integrase family protein [Burkholderia sp. H160]
          Length = 570

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 124/315 (39%), Gaps = 58/315 (18%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +ERG  LS LT +    D   +  FL   +     +  +R  +  + R F        + 
Sbjct: 257 VERGRALSSLTTE----DAIAYRAFLRHPSPRARWVGPVRPRTSPDWRPF-----NGSLS 307

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSL--PRALNEKQALTLVDN 140
            RS+  +LS + +  ++L +++    +    + +R     N L    A +E +   LV  
Sbjct: 308 ARSVAHALSILGALFRWLIEQRYVLANPFAGVKVREASGGNVLDTSHAFSEGE-WALVRT 366

Query: 141 VLLHTSHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDD---QSTLRIQGKG 194
           +         W       + +LL   Y  GLR SE +  T  +I  D      LR+ GKG
Sbjct: 367 IADGLEWSYDWSAPAAQRVRFLLDFGYATGLRASELVGATLGHIETDARGDHWLRVTGKG 426

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ---------- 244
            K+  V L P    A+  Y            +LP+   +R +P  P +            
Sbjct: 427 KKLARVALPPLAWDALAHYL--------AERELPIA-PVRWRPETPVIGSLEADSEVAIS 477

Query: 245 --RYIRQLRRYLGL----------PLS-----TTAHTLRHSFATHLLSNGGDLRSIQSIL 287
             R    LRR+  L          PL+      + H +RH+ ATH L  G +L +++  L
Sbjct: 478 SVRLWAVLRRFFLLAAQAIEADHPPLAEKLRRASPHWMRHTHATHALGRGAELTTVRDNL 537

Query: 288 GHFRLSTTQIYTNVN 302
            H  +STT IY + +
Sbjct: 538 RHASVSTTSIYLHSD 552


>gi|301310050|ref|ZP_07215989.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3]
 gi|325280034|ref|YP_004252576.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
 gi|300831624|gb|EFK62255.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3]
 gi|324311843|gb|ADY32396.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
          Length = 406

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 81/170 (47%), Gaps = 17/170 (10%)

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI 199
           ++L      K ++      ++ ++  GL  S+   L+P++++ D++  L I+    K +I
Sbjct: 232 IILAKEFTIKRVEQVRDVFIFCIFT-GLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKI 290

Query: 200 ---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
              +P+LP     + +Y D+      L   LP+    R           Y++++    G+
Sbjct: 291 MCNIPVLPVAASILDKYKDVAECTGKL---LPVLCNQR--------MNSYLKEIADVCGI 339

Query: 257 PLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             + + HT RHS+AT + L+NG  + ++  +LGH   S T+ Y  V  +N
Sbjct: 340 HKNLSTHTARHSYATSVCLANGVSMENVAKMLGHADTSVTKHYARVLDQN 389


>gi|218282511|ref|ZP_03488761.1| hypothetical protein EUBIFOR_01343 [Eubacterium biforme DSM 3989]
 gi|218216498|gb|EEC90036.1| hypothetical protein EUBIFOR_01343 [Eubacterium biforme DSM 3989]
          Length = 343

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 131/305 (42%), Gaps = 34/305 (11%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           ++ E  + EL+ +   ++   EIE G S+ T + Y         +      + +  + + 
Sbjct: 59  HICEFTNIELINK---FIAAKEIE-GCSERTTKYY---------YATLIKMDSMITKNVT 105

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK----SFLKYLKKRKITTESNILNMRNLK 120
            L+  ++R ++++   QKI + S K S+  I+    SF  +L++     +S +  +  +K
Sbjct: 106 HLTTDDLRMYLTE--YQKINNCS-KASIDNIRRNLSSFFSWLEEENYILKSPMKRIHKIK 162

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               +    +++    L DN            + R+ AI+ LL   G+R+ E + L   +
Sbjct: 163 TDKVIKETYSDETLELLRDN----------CNNLRDLAIIDLLSSTGMRVGELVRLNIND 212

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I  +     + GKG+K R V      +  +  Y +    D   N+ L +        LN 
Sbjct: 213 IDFENRECVVFGKGNKERPVYFDARTKIHLRNYINSRNDD---NVALFVSLDAPHDRLNI 269

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              +  +RQL R LG+      H  R + AT  +  G  +  +QS+LGH ++ TT  Y  
Sbjct: 270 SGVEIRLRQLGRKLGIN-KVHPHKFRRTVATKAIDKGMPIEQVQSLLGHSQIDTTMHYAM 328

Query: 301 VNSKN 305
           VN  N
Sbjct: 329 VNQNN 333


>gi|317481199|ref|ZP_07940273.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902634|gb|EFV24514.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 396

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 8/144 (5%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           A L+  Y  G+R S+ +SL+P NI++ +    +  K  K      LP     + E   L 
Sbjct: 237 AFLFCCYA-GMRYSDFISLSPDNIVEIRQETWLIYKSIKTSTEVRLPLY--LLFEGKGLV 293

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
             D      L  F  +R    N  V +  I  + R  GL    + HT RH+ AT L+ NG
Sbjct: 294 ILD-KYRDDLQSFFHLRD---NSNVNKDLI-VISRLAGLSKKISFHTARHTNATLLIYNG 348

Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301
            ++ ++Q +LGH  + TTQ+YTNV
Sbjct: 349 VNITTVQKLLGHKSVKTTQVYTNV 372


>gi|294634567|ref|ZP_06713102.1| site-specific recombinase, phage integrase family [Edwardsiella
           tarda ATCC 23685]
 gi|291092081|gb|EFE24642.1| site-specific recombinase, phage integrase family [Edwardsiella
           tarda ATCC 23685]
          Length = 345

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 67/155 (43%), Gaps = 29/155 (18%)

Query: 153 DARNSA------ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
           + RNS+      I+ +    G R SEA +L    I   + T  I+ KG + R +PL    
Sbjct: 189 ECRNSSASDLETIVKICLATGARWSEAENLRRSQISAGKVTF-IKTKGKRNRTIPL---- 243

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTL 265
                        DL L  +LP   G    P     +  +   L R  + LP     H L
Sbjct: 244 -------------DLKLIGELPKKNGALFTP----CYYAFRNALERAGIDLPAGQLTHVL 286

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           RH+FA+H + NGG++  +Q ILGH  +  T  Y +
Sbjct: 287 RHTFASHFMMNGGNILVLQKILGHTDIKMTMRYAH 321


>gi|283785697|ref|YP_003365562.1| phage integrase [Citrobacter rodentium ICC168]
 gi|282949151|emb|CBG88759.1| putative phage integrase [Citrobacter rodentium ICC168]
          Length = 326

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 22/153 (14%)

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           ++++  N  +  L    G R +E  +L  + +   + T  ++ K  K R VP+  ++ + 
Sbjct: 175 EFLEGDNRRVALLCLSTGARWNEGSTLRAEQVNHGRVTF-LKTKNGKKRTVPISEALERE 233

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-GLPLSTTAHTLRHS 268
           I        FD+N                    + ++  QLRR    LP   + H LRH+
Sbjct: 234 IKTCETGPLFDVN--------------------YAQFREQLRRVKPDLPRGQSTHVLRHT 273

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           FA+  + NGG++ ++Q I+GH  +  T +Y ++
Sbjct: 274 FASWFMMNGGNIIALQQIMGHASIKQTMVYAHL 306


>gi|163814364|ref|ZP_02205753.1| hypothetical protein COPEUT_00515 [Coprococcus eutactus ATCC 27759]
 gi|158449999|gb|EDP26994.1| hypothetical protein COPEUT_00515 [Coprococcus eutactus ATCC 27759]
          Length = 323

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 124/280 (44%), Gaps = 30/280 (10%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ----KIGD 85
           G S  T++ Y C+  + L        + I I  I+ ++   +R ++ + +T     K+  
Sbjct: 60  GCSDKTIRYYRCNIEKML--------DTINIPVIK-ITTEMLRKYLVEYQTTNNCGKVTI 110

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            +++RSLS   +F  +L++     +S +  +  +K +  +   + +++   L DN     
Sbjct: 111 DNIRRSLS---TFFSWLEEEDYIIKSPMKRIHKVKTAVIVKDTIPDEKIEILRDNCN--- 164

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
                  + R+ A++  L   G+R+ E + L   +I   +    + GKGDK R       
Sbjct: 165 -------NLRDRAMIDFLLSTGIRVGELVRLNIDDIDFSERECVVYGKGDKERKAYFDAK 217

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            +  +L Y +    D N+ + + L +    +    GV  R +R++ + LG+      H  
Sbjct: 218 TKIHLLNYIE-SRTDNNIALFVSLNKP-HSRLTESGVELR-LREMGKKLGVE-KVHPHKF 273

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           R + AT  +  G  +  +Q ILGH ++ TT  Y  VN  N
Sbjct: 274 RRTMATRAIEKGMPIEQVQKILGHEQIDTTLRYAMVNQNN 313


>gi|327490261|gb|EGF22049.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK1058]
          Length = 328

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 112/251 (44%), Gaps = 27/251 (10%)

Query: 62  TIRQLSYTEIRAFISK----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           +IR L+ +++R ++++    R++ K+   +++R  S   SF  +L+      +S +  + 
Sbjct: 88  SIRDLTTSDLRTYLARYQQERKSSKVTIDNMRRIFS---SFFGWLEDEDYILKSPVRRIH 144

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
            +K   ++    +++    L D               R+ A++ LL   G+R+ E + L 
Sbjct: 145 KIKTDKTIKETFSDEGLELLRD----------ACDKIRDLAMIDLLASTGMRVGELVRLN 194

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD---LNLNIQLPLFRGIR 234
            ++I   +    + GKG+  RIV      +  ++ Y D    D   L +++  P  R + 
Sbjct: 195 REDINFYERECVVFGKGNSERIVYFDARTKIHLINYLDSRQDDNPALFVSLSSPHDRLLI 254

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G     GV  R +RQL +   L      H  R + AT  +  G  +  +Q +LGH ++ T
Sbjct: 255 G-----GVETR-LRQLGQKADLN-KVHPHKFRRTLATRAIDKGMPIEQVQHLLGHVKIDT 307

Query: 295 TQIYTNVNSKN 305
           T  Y  VN  N
Sbjct: 308 TMHYAMVNQAN 318


>gi|169636475|ref|YP_001716016.1| putative integrase/recombinase XerD [Geobacillus
           stearothermophilus]
 gi|169403015|emb|CAP08226.1| putative integrase/recombinase XerD [Geobacillus
           stearothermophilus]
          Length = 304

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 138/306 (45%), Gaps = 41/306 (13%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +L E   +LQ    E+G S  T+ SY  D   F   L     + +T+  IR+     I+ 
Sbjct: 1   MLNEYVTYLQ----EKGASPNTIISYTNDLNIFFNDLHIRPGDYVTMADIRKW----IQQ 52

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            ++    + +   ++ R L+ ++SF  +  +     ++ + ++++LK ++      + ++
Sbjct: 53  MLNPAEGKPLAISTINRRLNALRSFYAWAVEHYKLEQNPMKDIQDLKSADE-----DNEK 107

Query: 134 ALTLVDNV---LLHTSHE----TKWIDA-----RNSAILYLLYGCGLRISEALSLTPQNI 181
            + L +     LLH   +    ++ +D      R+ A++YLL   GLR+ E  +L   ++
Sbjct: 108 IMWLTEEEFEDLLHRMRKKPVRSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDL 167

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN------IQLP-LFRGIR 234
             +   +RI GKG K+R VP + ++  A LE  D   F   +        + P +F   R
Sbjct: 168 DLEMKRIRIVGKGMKVRTVP-ISNILLAELE--DWLKFRAEMAKKKSHVAESPYVFYSQR 224

Query: 235 GKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRL 292
                P    R I+++     LP    T H  RH+F   +L +   D+  ++ + GH  +
Sbjct: 225 S----PKFSVRGIQRMIESYSLPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNI 280

Query: 293 STTQIY 298
           +TT  Y
Sbjct: 281 ATTSRY 286


>gi|330817073|ref|YP_004360778.1| integrase family protein [Burkholderia gladioli BSR3]
 gi|327369466|gb|AEA60822.1| integrase family protein [Burkholderia gladioli BSR3]
          Length = 578

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 124/305 (40%), Gaps = 46/305 (15%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +ERG  LS LT +    D   +  FL      +     IR     + R F     T  + 
Sbjct: 267 VERGRALSSLTTE----DALAYRAFLRRPAPAERWTGPIRPRRAADWRPF-----TGALS 317

Query: 85  DRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSLPRAL----NEKQALTLV 138
            RS   +LS + +  ++L +++  +    + + +R   ++ +L  +      E Q L  +
Sbjct: 318 ARSAAHALSVLGALFRWLVEQRYLLANPFSGVKVRGGTRAAALDSSRVFSDGEWQILRAI 377

Query: 139 DNVLLHTSHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDDQSTLR---IQG 192
            + L        W  A    + +LL   Y  GLR SE + L    I  D    R   + G
Sbjct: 378 ADGL---EWSLGWEPAAAQRLRFLLDFSYATGLRASELVGLRLGAIRSDAREDRWIHLVG 434

Query: 193 KGDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ-RYIR 248
           KG K   V L P   +A+  Y     L          LP+  G+ G+    G+   R  +
Sbjct: 435 KGGKAARVALPPLAWQALTRYALERGLSAVPTQWRPDLPVIGGL-GEDGAAGIGGVRLWK 493

Query: 249 QLRRYLG----------LPLS-----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            L+R+ G           PL+      + H +RH+ ATH L+ G +L +++  L H  +S
Sbjct: 494 VLKRFFGQVADMLAAEHPPLADKLRRASPHWMRHTHATHALARGAELTTVRDNLRHASIS 553

Query: 294 TTQIY 298
           TT IY
Sbjct: 554 TTSIY 558


>gi|294782426|ref|ZP_06747752.1| integrase/recombinase [Fusobacterium sp. 1_1_41FAA]
 gi|294481067|gb|EFG28842.1| integrase/recombinase [Fusobacterium sp. 1_1_41FAA]
          Length = 328

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 129/295 (43%), Gaps = 40/295 (13%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTI----RQLSYTEIRAFISKRRTQKIGDRS 87
           S+ T++ Y    + FL F+ +  E   +I  +    + +   ++ A+I         DR 
Sbjct: 33  SEKTVKDYMFHLKDFLHFV-YEGENDFSISEVIPLMQDIEKEDVEAYI----VHLFEDRK 87

Query: 88  LKRS-----LSGIKSFLKYLKKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLV 138
           LK++     LS +KS  K L+   +      + +    RN++  N L  ++++ + +   
Sbjct: 88  LKKTSVNTILSALKSLYKELESNGLKNPVKYIKLFKVNRNIE--NVLKVSIDDIRKII-- 143

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLR-IQGKGD 195
              L     E K+   RN  ILY L+  G+R  E L+L  ++ +  +D+   + +Q K  
Sbjct: 144 --GLYKIDSEKKY---RNITILYTLFYTGMRSKELLTLQFKHFLRREDEYFFKLVQTKSG 198

Query: 196 KIRIVPLLPSVRKAILEY-------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           K    P+  S+ K + EY       Y L   DL+ +        +   PL+       I+
Sbjct: 199 KDVYKPIHKSLVKKLEEYRSYLMNMYSLDSKDLDEHYIFAT-SVLNNSPLSYRSLNVIIQ 257

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            + + +   +S   H +RH+ AT L  NG D+  I+  LGH     T++Y N  S
Sbjct: 258 DMGKLIEKDIS--PHNIRHAIATELSLNGADILEIRDFLGHSDTKVTEVYINARS 310


>gi|168184027|ref|ZP_02618691.1| tyrosine recombinase XerC [Clostridium botulinum Bf]
 gi|237794099|ref|YP_002861651.1| tyrosine recombinase XerC [Clostridium botulinum Ba4 str. 657]
 gi|182672827|gb|EDT84788.1| tyrosine recombinase XerC [Clostridium botulinum Bf]
 gi|229261398|gb|ACQ52431.1| tyrosine recombinase XerC [Clostridium botulinum Ba4 str. 657]
          Length = 138

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 6/120 (5%)

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           S + + GKG+K R + L P+ +KAI ++  +    ++N N    LF       +     Q
Sbjct: 4   SFIYVVGKGNKKREIFLTPAAKKAINDWLHIRNSINVNTN---ALFISRNSNRITTRAIQ 60

Query: 245 RYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTNVN 302
             +++     GL   S + H LRH+ AT +   G  D+RS+Q ILGH  ++TT+IYT+++
Sbjct: 61  NIVKKYVITSGLDTKSISTHKLRHTAATLMYKYGRVDIRSLQQILGHESVATTEIYTHID 120


>gi|160887647|ref|ZP_02068650.1| hypothetical protein BACUNI_00047 [Bacteroides uniformis ATCC 8492]
 gi|270294572|ref|ZP_06200774.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|156862858|gb|EDO56289.1| hypothetical protein BACUNI_00047 [Bacteroides uniformis ATCC 8492]
 gi|270276039|gb|EFA21899.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 396

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 8/144 (5%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           A L+  Y  G+R S+ +SL+P NI++ +    +  K  K      LP     + E   L 
Sbjct: 237 AFLFCCYA-GMRYSDFISLSPDNIVEIRQETWLIYKSIKTSTEVRLPLY--LLFEGKGLV 293

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
             D      L  F  +R    N  V +  I  + R  GL    + HT RH+ AT L+ NG
Sbjct: 294 ILD-KYRDDLQSFFHLRD---NSNVNKDLI-VISRLAGLSKKISFHTARHTNATLLIYNG 348

Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301
            ++ ++Q +LGH  + TTQ+YTNV
Sbjct: 349 VNITTVQKLLGHKSVKTTQVYTNV 372


>gi|158520653|ref|YP_001528523.1| integrase family protein [Desulfococcus oleovorans Hxd3]
 gi|158509479|gb|ABW66446.1| integrase family protein [Desulfococcus oleovorans Hxd3]
          Length = 397

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 14/182 (7%)

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           PR  N+K      D +        +W D  ++  +  L   GLR  E   LT Q++  D+
Sbjct: 201 PRLNNQKTGFLTDDELTRLLDVLEQWPDRMSAGFIAFLLHTGLRRGELFRLTWQDVNMDR 260

Query: 186 STLRIQG-KGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
            TL ++  KG +  ++PL      A+  L      PF         +F G  G       
Sbjct: 261 QTLTVRDPKGGRDTVLPLSEKAIDALNSLPREHETPF---------VFYGRNGA--QRAD 309

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           F+    ++++   LP     H LRH FA+ L+S G +L ++Q++L H   + TQ Y +++
Sbjct: 310 FRHPWYRIKQAAALPEGFRLHDLRHHFASALVSAGTNLYTVQALLTHKSAAMTQRYAHLS 369

Query: 303 SK 304
            +
Sbjct: 370 DQ 371


>gi|323175010|gb|EFZ60625.1| integrase [Escherichia coli LT-68]
          Length = 330

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 102/239 (42%), Gaps = 46/239 (19%)

Query: 72  RAFISKRRTQKIG----DRSLKRSLSGIKSFLKYLKKRKITTESN-ILNMRNLKKSNSLP 126
           R F+ + R++K+       S+ R L  + +    L + ++   +N +  +R LK  N+  
Sbjct: 103 RKFMLEYRSEKLQAGLMPSSINRDLCVLSTMFTVLIEAEVFHNANPVRGIRKLKVQNTEM 162

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             L++ +   L++ +           DAR  AIL L    G R  EA  L  ++I+ ++ 
Sbjct: 163 AFLSDDEIEQLLERLEG---------DARRVAILCL--STGARWREASELRGEHIVGNRV 211

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           T     K  K R VP+  SV                    +PL +  R   L    +Q  
Sbjct: 212 TF-FNTKNGKSRSVPVADSV--------------------VPLIKTRRTGLL----YQVD 246

Query: 247 IRQLRRYL-----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             + R  L      LP     H +RH+FATH + NGG++ ++Q ILGH  +  T  Y +
Sbjct: 247 YLEFREILQEVKPDLPKGQATHVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYAH 305


>gi|227355962|ref|ZP_03840354.1| integrase [Proteus mirabilis ATCC 29906]
 gi|227163950|gb|EEI48852.1| integrase [Proteus mirabilis ATCC 29906]
          Length = 329

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 99/231 (42%), Gaps = 29/231 (12%)

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKKSNSLPRALNEKQALTL 137
           R + +  R+    L+  ++    L +     + N L N+R+ +   S    L+++Q + L
Sbjct: 114 RIKSVAPRTTNLELAYFRAMFNELHRLGEWKDDNPLKNIRSFRTDESEMAFLSDEQIIQL 173

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++        ++K  D   S I+ +    G R SEA  LT   +   + T   + KG + 
Sbjct: 174 LEEC-----DKSKAKDL--SIIVKIALSTGARWSEAEGLTSSQVTPYKITF-TKIKGKRN 225

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R VP+   +       YD  P               RG    P      +   R  + LP
Sbjct: 226 RTVPISKVL-------YDEIP-------------KKRGALFTPCYSAFRMAMKRTGIELP 265

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
              ++H LRH+FA+H + NGG++  +Q ILGH  +  T  Y++ + ++  D
Sbjct: 266 HRQSSHVLRHTFASHFMMNGGNILVLQRILGHTDIKMTMRYSHFSPEHLED 316


>gi|218892832|ref|YP_002441701.1| putative bacteriophage integrase [Pseudomonas aeruginosa LESB58]
 gi|218773060|emb|CAW28872.1| putative bacteriophage integrase [Pseudomonas aeruginosa LESB58]
          Length = 338

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 21/139 (15%)

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
             G R SEA  LT   ++ D S +    K  ++R VP+   ++  + +Y+          
Sbjct: 194 ATGARWSEAQGLT-LPMVRDGSVVFSNTKSKRVRSVPISTDLQARLEKYFA--------- 243

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                     G+   P   + + R ++R  + LP     H LRH+FA+H + NGG++ ++
Sbjct: 244 ----------GRNRFPSCREAFARMVKRCGIVLPRGQCTHVLRHTFASHFMMNGGNILAL 293

Query: 284 QSILGHFRLSTTQIYTNVN 302
           + ILGH  L+ T  Y +++
Sbjct: 294 KEILGHSSLNMTMRYAHLS 312


>gi|17549123|ref|NP_522463.1| putative integrase/recombinase protein [Ralstonia solanacearum
           GMI1000]
 gi|17431374|emb|CAD18053.1| putative integrase/recombinase protein [Ralstonia solanacearum
           GMI1000]
          Length = 566

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 126/306 (41%), Gaps = 48/306 (15%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           IERG  LS LT +    D   +  FL   +  +  +   R  +  + R F     T  + 
Sbjct: 256 IERGRPLSSLTTE----DAIAYRGFLRRPSPHERWVGPARPRASADWRPF-----TDGLS 306

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            RS+  SLS + +  ++L +++    +    ++   +      AL+   A +  +  L+ 
Sbjct: 307 ARSIAYSLSVLGAMFRWLIQQRYVLANPFAGIK--VRGGGRTAALDASHAFSEGEWALVR 364

Query: 145 T-SHETKWIDARNSA-------ILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGK 193
           T +   +W     +A       +L   Y  GLR SE ++     I  D+ +   L + GK
Sbjct: 365 TLADGLEWSYGWEAAAAQRLRFVLDFAYATGLRASELITARLGGIETDRQSDHWLSLIGK 424

Query: 194 GDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPG--------- 241
           G +   V L P  R A+  Y     L       N Q PL  G  G  L+PG         
Sbjct: 425 GGRAGKVALPPLARTALDRYLVERGLPVTQARWNPQTPLI-GALG--LDPGGGITGSRLW 481

Query: 242 -VFQRYIRQL-----RRYLGLP---LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
            V +R+ R       R +  L       + H +RH+ A+H L+ G +L +++  L H  +
Sbjct: 482 SVMRRFFRVAADLIERDHTALAEKLRKASPHWMRHTHASHALARGAELTTVRDNLRHASI 541

Query: 293 STTQIY 298
           STT IY
Sbjct: 542 STTSIY 547


>gi|332139698|ref|YP_004425436.1| site-specific recombinase, phage integrase family protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549720|gb|AEA96438.1| site-specific recombinase, phage integrase family protein
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 297

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 109/230 (47%), Gaps = 10/230 (4%)

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP---RALNEKQALT 136
           TQ    RS+ R++  I+S +K      +  E   + +R + K N      + L+ +Q   
Sbjct: 61  TQGWSARSINRAMIAIRSIVKIAVLSGLVPEMQSIQLRAISKVNHGKHDGKPLSTEQ--- 117

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
            V+ +L+    +   +  RN A++  L G GLR SE ++L  ++ ++  + +  +GKG+K
Sbjct: 118 -VNKLLIKLQRDKSVLGIRNYALISTLLGTGLRRSELVALLVEDFIEGTALIVRKGKGNK 176

Query: 197 IRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYL 254
            R V L    + A+ ++  L    + +L +++     I+    L+        ++    +
Sbjct: 177 SRTVHLPAWTQLALNQWLTLRSKSNGHLFVRVAKGGNIKHNTALSSCSIYSLTKKSLASI 236

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           G+    + H LR +F T LL    D+ +++ + GH  +STT +Y   + K
Sbjct: 237 GIE-GVSPHDLRRTFITRLLEQNVDINTVRQMAGHEDISTTIMYDKRDEK 285


>gi|322832185|ref|YP_004212212.1| integrase family protein [Rahnella sp. Y9602]
 gi|321167386|gb|ADW73085.1| integrase family protein [Rahnella sp. Y9602]
          Length = 328

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 22/148 (14%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           D RN+ +L L    G R SE   L  ++I++   T  ++ K  + R +PL   + K + +
Sbjct: 183 DNRNAVLLCL--ATGGRWSEVADLKAEHIINCMLTF-MKTKNGRRRTIPLSEGLVKMVKK 239

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                 F  N +      R +  KP                  LP     H LRH+FATH
Sbjct: 240 RSTGKLFTPNYDTVRNTLRAM--KP-----------------DLPAGQAVHVLRHTFATH 280

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            + NGG++ ++Q ILGH  +  T +Y +
Sbjct: 281 FMMNGGNIITLQRILGHSTVQQTMVYAH 308


>gi|57234825|ref|YP_181071.1| phage integrase family site specific recombinase [Dehalococcoides
           ethenogenes 195]
 gi|57225273|gb|AAW40330.1| site-specific recombinase, phage integrase family [Dehalococcoides
           ethenogenes 195]
          Length = 336

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 80/185 (43%), Gaps = 19/185 (10%)

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           +KK   LP  +       LVD +     H  K   AR+  ++      GLR SE  +L  
Sbjct: 97  VKKPKHLPEYVEPADIEKLVDAIT--CKHNHKDTIARDEMLIRFAQMTGLRRSELANLKV 154

Query: 179 QNIMDDQSTLRI-QGKGDKIRIVPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
            +I  ++ T+ + QGKG K R VP+ L  + K         P D   N+     R I  K
Sbjct: 155 SDIQLEKRTVFVRQGKGMKDRAVPIPLGLISKLTSFLAHKQPSDSLFNLT---SRSITDK 211

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
                     +    +  G+ +    H LRHS+A  LL  G  L S+Q++LGH  L TT 
Sbjct: 212 ----------LSTWSKKAGVKIH--PHQLRHSYAEQLLEKGAALTSVQALLGHESLQTTS 259

Query: 297 IYTNV 301
           +Y  +
Sbjct: 260 VYLGI 264


>gi|298253391|ref|ZP_06977183.1| phage-like integrase [Gardnerella vaginalis 5-1]
 gi|297532786|gb|EFH71672.1| phage-like integrase [Gardnerella vaginalis 5-1]
          Length = 279

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 93/220 (42%), Gaps = 31/220 (14%)

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
            + + K + + I+ F  YL    I T+    ++ +++ S  LP    ++     ++ V  
Sbjct: 70  ANETRKSNRAAIRGFFNYLFHTHIRTDDPAFDLPSVRPSRPLPHPCPDQYITNALEQV-- 127

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGDKIRIV 200
              H  K        ++ L  G GLR  E   +   +I++D      L I GKG+K R +
Sbjct: 128 ---HNNK-----ERLMIILAAGYGLRRCEICRIHSNDIINDAYGGYALIIHGKGNKERSL 179

Query: 201 PLLPSVRKAIL-EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+   +   I+ E+  L P                G+  +  V + YI +    L LP  
Sbjct: 180 PISTDIAMHIIAEHGYLYP----------------GRYPDTHVEESYIGKRLSDL-LPNG 222

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            + H+LRH FAT       D+ ++   LGH  ++TTQ Y 
Sbjct: 223 WSGHSLRHRFATTAYCKTHDIFAVSRALGHESVATTQRYV 262


>gi|257452045|ref|ZP_05617344.1| putative integrase [Fusobacterium sp. 3_1_5R]
 gi|317058593|ref|ZP_07923078.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
 gi|313684269|gb|EFS21104.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
          Length = 329

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 116/252 (46%), Gaps = 27/252 (10%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDR----SLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           + I+ +   ++R+++++ +++K   R    +++R LS   SF  +L+      +S +  +
Sbjct: 88  KEIKYIVTDDLRSYLTEYQSEKQSSRVTIDNIRRILS---SFFSWLEDEDYILKSPVRRI 144

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             +K  +S+    ++++   + D     + HE      R+ A++ +L   G+R+ E + L
Sbjct: 145 HKVKTISSIKDTYSDEELERMRD-----SCHEI-----RDLALIDILASTGMRVGELVLL 194

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
             Q+I   +    + GKGDK R+V      +  +  Y      +  ++    LF  +R K
Sbjct: 195 NRQDIQFGERECIVFGKGDKERVVYFDARTKIHLQNY-----LNTRVDSNPALFVALR-K 248

Query: 237 PLNP---GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           P N    G  +  +R++ + L +      H  R + AT  +  G  +  +Q +LGH R+ 
Sbjct: 249 PYNRLTIGGIEVRLRKIGKELEIN-KVHPHKFRRTLATIAIDKGMPIEQLQKLLGHRRID 307

Query: 294 TTQIYTNVNSKN 305
           TT  Y  V   N
Sbjct: 308 TTLQYAMVKQSN 319


>gi|228924524|ref|ZP_04087724.1| Tyrosine recombinase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228835149|gb|EEM80590.1| Tyrosine recombinase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 357

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 126/304 (41%), Gaps = 42/304 (13%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK---------RRTQKIGD 85
           TL +Y  D R F  +L   +E+ I  + I+ +S++++     K         +  Q + +
Sbjct: 43  TLLNYVYDFRVFFNWLL--SEQIIEFKPIKDISFSDLENLKKKDVENFMRFLKLQQNMQN 100

Query: 86  RSLKRSLSGIKSFLKYL------------------KKRKITTESNILNMRNLKKSNSLPR 127
            S+ R +S +KS  KYL                   K +I  +   LN R  +  + +  
Sbjct: 101 SSVNRKISALKSLFKYLTSLSENEDGECYFYRNVMAKIEIHKDKETLNARAKRMRSKIFH 160

Query: 128 ALNEKQALTLV--DNVLLHTSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIM 182
             ++++ L  V  ++    T H+  +      R+ AIL L  G G+R+SE   L  ++I 
Sbjct: 161 NDDDQEFLNYVKYEHEKALTKHQLFYFLRDKERDVAILSLFLGSGIRVSELADLRMEDIN 220

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKP 237
             +  + +  KG+K   V + P     + +Y ++      P     N+ L  ++    +P
Sbjct: 221 LKERLIDVIRKGNKEDSVWITPIALNDLEKYMEIRDNKYAPGKELQNVFLSKYKHT-AQP 279

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+    Q  + +  +  G  +S   H LRH+ A  L     D   +   LGH    T  +
Sbjct: 280 LSVRAIQDIVEKYTKAFGKKMS--PHKLRHTLANKLYMEEKDSLQVMQQLGHTSQDTALL 337

Query: 298 YTNV 301
           YT +
Sbjct: 338 YTQL 341


>gi|116048748|ref|YP_792452.1| putative integrase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115583969|gb|ABJ09984.1| putative integrase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 258

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 96/241 (39%), Gaps = 39/241 (16%)

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSL 125
           SY  +R    KR  + I  ++L   L  +++    LK   +I   + +  ++ LK     
Sbjct: 20  SYASLR---RKRLEEGISGKTLNNELGYLRAVFNELKDLGQIDYGNPLAGVKLLKLQERE 76

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
              L  +Q   L+D++       ++  +     +  L    G R SEA  L P + +   
Sbjct: 77  LSWLTTEQIGELLDSI------RSRCDNPHTELVTLLCLATGARWSEAEKL-PAHRLQGN 129

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
                  K  K+R VP+ P +      ++ +                        G F  
Sbjct: 130 VVTYAGTKSGKVRHVPIPPELANRASAHWRM-----------------------HGPFTS 166

Query: 246 YIRQLRRYLG-----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            I   RR L      LP    +H LRHSFA+H + NGG++ ++Q ILGH  L+ T  Y +
Sbjct: 167 CITSFRRALDRTTIQLPQGQASHALRHSFASHFMMNGGNILTLQKILGHSTLTMTMRYAH 226

Query: 301 V 301
           +
Sbjct: 227 L 227


>gi|319896531|ref|YP_004134724.1| hypothetical protein HIBPF01270 [Haemophilus influenzae F3031]
 gi|317432033|emb|CBY80381.1| phage integrase [Haemophilus influenzae F3031]
          Length = 337

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 60/142 (42%), Gaps = 21/142 (14%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I+ +    G R SEA +LT   +M  + T     K  K R VP+         E +D+ P
Sbjct: 197 IVRICLATGARWSEAETLTQSQVMPYKITF-TNTKSKKNRTVPISK-------ELFDMLP 248

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
                          RG+  N          LR  + LP     H LRH+FA+H + NGG
Sbjct: 249 -------------KKRGRLFNDAYESFENAVLRAEIELPKGQLTHVLRHTFASHFMMNGG 295

Query: 279 DLRSIQSILGHFRLSTTQIYTN 300
           ++  ++ ILGH  +  T  Y +
Sbjct: 296 NILVLKEILGHSTIEMTMRYAH 317


>gi|168213629|ref|ZP_02639254.1| phage integrase [Clostridium perfringens CPE str. F4969]
 gi|170714780|gb|EDT26962.1| phage integrase [Clostridium perfringens CPE str. F4969]
          Length = 400

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 85/189 (44%), Gaps = 49/189 (25%)

Query: 152 IDARNSAILYLLYGCGLRISEALSL--TPQNIMDD--------QSTLRIQGKGDK----- 196
           ++ +N  +  L  G GLR+ E L+L  T  N  ++        +ST +I  KG++     
Sbjct: 203 MNNKNGMLYILALGTGLRLGEILALKWTDINFKNNYIDINKAIKSTYKIDSKGNREFQII 262

Query: 197 ---------IRIVPLLPSV--------------RKAILEYYDLCPFDLNLNIQLPLFRGI 233
                    IR VPL  ++              R + +E Y    FD NL    P+    
Sbjct: 263 EQQPKTKNSIRTVPLNNNLIELLQQHRKKQMIDRDSNIEIY----FDNNLVFSTPI---- 314

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            G  LN    ++  +++ +   L      H LRH+FAT L  NG   +++Q+ILGH  +S
Sbjct: 315 -GNYLNESNVRKTFKRILKKCNLK-ELRFHDLRHTFATRLFENGVPPKTVQTILGHSDIS 372

Query: 294 TT-QIYTNV 301
           TT  IYT+V
Sbjct: 373 TTLNIYTHV 381


>gi|116049139|ref|YP_792059.1| putative bacteriophage integrase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|37596415|gb|AAQ94690.1| PA0728 [Pseudomonas phage Pf1]
 gi|115584360|gb|ABJ10375.1| putative bacteriophage integrase [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 338

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 21/141 (14%)

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
             G R SEA  LT   ++ D S +    K  ++R VP+   ++  + +Y+          
Sbjct: 194 ATGARWSEAQGLT-LPMVRDGSVVFSNTKSKRVRSVPISTDLQARLEKYFA--------- 243

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                     G+   P   + + R ++R  + LP     H LRH+FA+H + NGG++ ++
Sbjct: 244 ----------GRNRFPSCREAFARMVKRCGIVLPRGQCTHVLRHTFASHFMMNGGNILAL 293

Query: 284 QSILGHFRLSTTQIYTNVNSK 304
           + ILGH  L+ T  Y +++ +
Sbjct: 294 KEILGHSSLNMTMRYAHLSPE 314


>gi|229070616|ref|ZP_04203854.1| Phage integrase [Bacillus cereus F65185]
 gi|228712521|gb|EEL64458.1| Phage integrase [Bacillus cereus F65185]
          Length = 351

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 126/295 (42%), Gaps = 57/295 (19%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T Q Y  D   FL ++      K TI TI++LS+ E+  +  +  ++K    +L++ 
Sbjct: 66  SERTKQQYLHDLSHFLRYI------KETIGTIQELSHNEMEIYFYEL-SKKYASTTLRKK 118

Query: 92  LSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVD-----NVLLH 144
            + ++ FLKY+      ++  S+ L   ++KK   + R L  ++   ++D     N  ++
Sbjct: 119 KTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLYPEEVTQILDELKKSNYFVY 178

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIV 200
           T+              +LL   GLRI E  +    +++   S     LR+ GKG+K R V
Sbjct: 179 TA-------------FFLLTTTGLRIEEIATAKWADLVFHSSLNAYLLRVVGKGNKSREV 225

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQ-----LPLFRG--IRGKPLNPGV----------F 243
            +      A+     L      L+       LP   G   R   L+  V          F
Sbjct: 226 RIFEDTLDALCHVRSLRKQTTELDASSTSAFLPKADGSNYRADYLSSLVAKKIEELNLDF 285

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            RY RQ R         T HT RH  A +L+  G +L+ I+  LGH  + TT+ Y
Sbjct: 286 LRY-RQDR--------ITPHTCRHFMANYLMEKGVELKKIRDYLGHESIMTTERY 331


>gi|330502131|ref|YP_004379000.1| putative integrase [Pseudomonas mendocina NK-01]
 gi|328916417|gb|AEB57248.1| putative integrase [Pseudomonas mendocina NK-01]
          Length = 312

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 23/145 (15%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I  +    G R SEA  L P  + +   T      G K+R VP+   +   I+ ++    
Sbjct: 174 IALICLATGARWSEAEKLKPTGLRNGVITFSGTKNG-KVRSVPITAELEAKIVRHWKQ-- 230

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGV--FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
                           G+P N  +  F+R +   R  + LP    AH LRH+FA+H + N
Sbjct: 231 ---------------HGQP-NSAITSFRRAL--ARTTIRLPKGQAAHALRHTFASHFIQN 272

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNV 301
           GG++ ++Q I GH  L+ T  Y ++
Sbjct: 273 GGNILTLQKIQGHSCLAMTMRYAHL 297


>gi|298206478|ref|YP_003717580.1| resolvase/integrase [Escherichia coli ETEC 1392/75]
 gi|297374350|emb|CBL93324.1| resolvase/integrase [Escherichia coli ETEC 1392/75]
          Length = 268

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 96/238 (40%), Gaps = 70/238 (29%)

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHT-------SHETKWI-----DARNSAILYLLYG 165
           + ++  SLP A++   AL L    ++H        + E   +     D R   +L  L+ 
Sbjct: 19  SAEQPASLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPDLRRKMLLATLWN 78

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL-------------- 211
            G RI+EAL+LT               +GD   + P  P V+ A L              
Sbjct: 79  TGARINEALALT---------------RGD-FSLTPPYPFVQLAALKQRTEKAARTAGRT 122

Query: 212 ----EYYDLCPFD------------LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
               + Y L P                L I +       G+  N  +++   R +R ++G
Sbjct: 123 PARQQTYRLVPLSDFWYVSQLQTMVATLKISMERRNKRTGRTENVRIWEVTGRTVRTWIG 182

Query: 256 LPLSTTA------------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             ++T A            HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 183 EAVATAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240


>gi|308188180|ref|YP_003932311.1| Integrase [Pantoea vagans C9-1]
 gi|308058690|gb|ADO10862.1| Integrase [Pantoea vagans C9-1]
          Length = 337

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 80/181 (44%), Gaps = 15/181 (8%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE------ALSLTPQN 180
           R L+E QA   +DN+  +   E++     +  I  LL  C    S+       L L    
Sbjct: 147 RRLDEWQAPNPLDNIREYKIAESEMAYLTDEEIRSLLRECEASTSKDLLTVVKLCLATGA 206

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
              +  TL    KG++IR   ++ +  K   +     P    L  +LP  R  + KPL  
Sbjct: 207 RWGEAETL----KGNQIRAGKVIFTKTKG--KKNRAIPISDALIAELPASR--KAKPLFS 258

Query: 241 GVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
             +  +   L+R  +  P     H LRH+FA+H + NGG++  +Q ILGH  +  T  Y+
Sbjct: 259 SCYAAFRSALKRAEIETPAGQLTHVLRHTFASHFMMNGGNILVLQRILGHTDIKVTMRYS 318

Query: 300 N 300
           +
Sbjct: 319 H 319


>gi|256838892|ref|ZP_05544402.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256739811|gb|EEU53135.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 389

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 138/318 (43%), Gaps = 42/318 (13%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
            +GN   ++   +LL +R N      +    +  T+ +Y    R    F+   TE K++ 
Sbjct: 100 FQGNAGMQMTLLKLL-DRHNEEMKARVGVDRAPTTMSTYVYTRRTLAEFIK--TEFKVSD 156

Query: 61  QTIRQLSYTEIRAF----ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
               QL+   IR +    + K+   K+   +++  LS +K   +   K   + + +  + 
Sbjct: 157 LAFGQLNEQFIRDYQDFCLEKK---KLAMETVRHYLSILKKICRIAYKEGHSEKYHFCHF 213

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL---YLLYGC--GLRIS 171
           +  K+  + P+AL+ +    L D          +  + R S ++     L+ C  G   +
Sbjct: 214 KLPKQKETTPKALSRENFEKLRD---------LEIPEKRRSHVITRDLFLFACYTGTAYA 264

Query: 172 EALSLTPQNIM-DDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           +A+S+T +N+  DD+ +L ++    K D +  V LLP     I +Y D        + ++
Sbjct: 265 DAVSITRENLFQDDEGSLWLKYRRKKTDYLGRVKLLPEALALIGKYRD--------DTRI 316

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSI 286
            LF      P +    +  ++ LR   GL      H  RHSFA+ + L  G  + +I  +
Sbjct: 317 TLF-----PPQDYHTLRANMKSLRLMAGLSQDLVYHMGRHSFASLVTLEEGVPIETISKM 371

Query: 287 LGHFRLSTTQIYTNVNSK 304
           LGH  + TTQIY  V  K
Sbjct: 372 LGHSNIKTTQIYARVTPK 389


>gi|198243118|ref|YP_002216741.1| phage integrase [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|197937634|gb|ACH74967.1| phage integrase [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|326624498|gb|EGE30843.1| phage integrase [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
          Length = 341

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 30/154 (19%)

Query: 153 DARNSAILYLLYGC---GLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSV 206
           D+++ ++L +   C   G R SEA +L    +    S  RI   + KG K R VP+    
Sbjct: 190 DSQSPSLLMIAKVCLATGARWSEAENLQGHQL----SKYRITYTKTKGKKNRTVPI---- 241

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
                          +L  +LP  RG    P     F+R ++  R  + LP     H LR
Sbjct: 242 -------------SQDLYEELPKNRGKLFTPCRK-AFERAVK--RAGIELPEGQCTHVLR 285

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           H+FA+H + NGG++  ++ ILGH  +  T +Y +
Sbjct: 286 HTFASHFMMNGGNILVLRDILGHADIKMTMVYAH 319


>gi|1679807|emb|CAA96221.1| integrase [Haemophilus phage S2]
          Length = 337

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 60/142 (42%), Gaps = 21/142 (14%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I+ +    G R SEA +LT   +M  + T     K  K R VP+         E +D+ P
Sbjct: 197 IVRICLATGARWSEAETLTQSQVMPYKITF-TNTKSKKNRTVPISK-------ELFDMLP 248

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
                          RG+  N          LR  + LP     H LRH+FA+H + NGG
Sbjct: 249 -------------KKRGRLFNDAYESFENAVLRAEIELPKGQLTHVLRHTFASHFMMNGG 295

Query: 279 DLRSIQSILGHFRLSTTQIYTN 300
           ++  ++ ILGH  +  T  Y +
Sbjct: 296 NILVLKEILGHSTIEMTMRYAH 317


>gi|325860247|ref|ZP_08173372.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325482334|gb|EGC85342.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 407

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 17/167 (10%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIR 198
           L+   ++ +  + R + IL L   CGLR  +   LT +N+      L+ +    KG    
Sbjct: 240 LIQCHYDNENPNVRRAFILCLY--CGLRFCDVKDLTYKNVDYTNRLLKFEQNKTKGHSAH 297

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
              ++P +   +L      P DLN +I  LP +             +R+I++     G+ 
Sbjct: 298 SGVIIP-LNDGLLSLIGEAPEDLNSSIFNLPSYESCSKS------VKRWIKRA----GIN 346

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              + H  RHSFA ++L+NG +++++ S+LGH  L  T+ YT    K
Sbjct: 347 KHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|9628601|ref|NP_043466.1| integrase [Haemophilus phage HP1]
 gi|138561|sp|P21442|VINT_BPHP1 RecName: Full=Integrase
 gi|459175|gb|AAB09182.1| integrase [Haemophilus phage HP1]
          Length = 337

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 60/142 (42%), Gaps = 21/142 (14%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I+ +    G R SEA +LT   +M  + T     K  K R VP+         E +D+ P
Sbjct: 197 IVRICLATGARWSEAETLTQSQVMPYKITF-TNTKSKKNRTVPISK-------ELFDMLP 248

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
                          RG+  N          LR  + LP     H LRH+FA+H + NGG
Sbjct: 249 -------------KKRGRLFNDAYESFENAVLRAEIELPKGQLTHVLRHTFASHFMMNGG 295

Query: 279 DLRSIQSILGHFRLSTTQIYTN 300
           ++  ++ ILGH  +  T  Y +
Sbjct: 296 NILVLKEILGHSTIEMTMRYAH 317


>gi|303237761|ref|ZP_07324320.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302482047|gb|EFL45083.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 410

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 14/147 (9%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            ++ C  GL   +  +LTP NI  +DD+  +  + +   +    LL  + K+I+  Y   
Sbjct: 249 FIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTNVETNVLLLDIPKSIIAKYSHK 308

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            +         LF  +  +  N      Y++++    G+  + T H  RH+FAT  LS G
Sbjct: 309 TYR-----DGKLFPILTNQKTNA-----YLKEIADICGIKKNLTFHLARHTFATMSLSKG 358

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSK 304
             + S+  +LGH  + TTQIY  + +K
Sbjct: 359 VPMESVSKMLGHTNIKTTQIYARITNK 385


>gi|19704172|ref|NP_603734.1| integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|19714390|gb|AAL95033.1| Integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 328

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 133/294 (45%), Gaps = 38/294 (12%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTI----RQLSYTEIRAFISKRRTQKIGDRS 87
           S+ T++ Y    + FL F+ +  E   +I  +    + +   ++ A+I         DR 
Sbjct: 33  SEKTVKDYMFHLKDFLHFV-YDGENDFSISEVIPLMQDIEKEDVEAYI----VHLFEDRK 87

Query: 88  LKRS-----LSGIKSFLKYLKKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLV 138
           LK++     LS +KS  K L+   +      + +    RN++  N L  ++++ + +   
Sbjct: 88  LKKTSVNTILSALKSLYKELESNGLKNPVKYIKLFKVNRNIE--NILKVSIDDIRKII-- 143

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLR-IQGKGD 195
              L     E K+   RN  ILY L+  G+R  E L+L  ++ +  +D+   + +Q K  
Sbjct: 144 --GLYKIDSEKKY---RNITILYTLFYTGMRSKELLTLQFKHYLKREDEYFFKLVQTKSG 198

Query: 196 KIRIVPLLPSVRKAILEY--YDLCPFDLNLNI--QLPLFRG--IRGKPLNPGVFQRYIRQ 249
           K    P+  S+ K + EY  Y +  + L+L    +  +F    +   PL+       I+ 
Sbjct: 199 KDVYKPIHKSLVKKLEEYKEYLMSMYSLDLKDLDEKYIFSTSILDNSPLSYRSLNAIIQD 258

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           + + +G  +S   H +RH+ AT L  +G D+  I+  LGH     T++Y N  S
Sbjct: 259 MGKLIGKDIS--PHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARS 310


>gi|319641868|ref|ZP_07996545.1| transposase [Bacteroides sp. 3_1_40A]
 gi|317386541|gb|EFV67443.1| transposase [Bacteroides sp. 3_1_40A]
          Length = 407

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 13/145 (8%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKG-DKIRIVPLLP--SVRKAILEYYDL 216
            ++ C  GL  S+   L  ++I++D + +R   KG  K +I+  +P   V   ILE Y  
Sbjct: 251 FVFCCFTGLAFSDIHGLGKEHIVEDSNGVRWIRKGRQKTKIMCNIPLMEVPLKILEKYST 310

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
             +     +  P+   +  + +N      Y+++L    G+  + T H  RH+FAT  L+N
Sbjct: 311 NEYCRKHGVLFPV---LCNQKMNA-----YLKELADICGIKKTLTTHVARHTFATFALAN 362

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNV 301
           G  + S+  +LGH  +  T+ Y  V
Sbjct: 363 GVSIESVAKMLGHTNVQMTRHYARV 387


>gi|296330503|ref|ZP_06872982.1| hypothetical protein BSU6633_05369 [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674712|ref|YP_003866384.1| phage integrase-like protein [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296152400|gb|EFG93270.1| hypothetical protein BSU6633_05369 [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412956|gb|ADM38075.1| phage integrase-like protein [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 77

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 38/58 (65%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           I+++    G+  S   H LRHS+ATHL++NG  L  IQS+LGH +  TT+IY  ++ K
Sbjct: 10  IKRISNRAGIKKSIHPHQLRHSYATHLINNGAPLEVIQSLLGHEKSETTKIYAQLSGK 67


>gi|162447445|ref|YP_001620577.1| tyrosine recombinase/integrase [Acholeplasma laidlawii PG-8A]
 gi|161985552|gb|ABX81201.1| tyrosine recombinase/integrase, xerDC family [Acholeplasma
           laidlawii PG-8A]
          Length = 310

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 82/189 (43%), Gaps = 20/189 (10%)

Query: 152 IDARNSAILYLLYGCGLRISEA--LSLTPQNIMDDQSTLRIQGKG--DKIRIVPLLPSVR 207
           I  R+  ++ L+   G+R  E     ++  N++DD   L + GKG   K   V L P V 
Sbjct: 130 IKYRDYVMVLLMLTTGMRTVEVERADVSDLNVIDDGEILYVHGKGKTSKSSFVRLSPLVN 189

Query: 208 KAILEY-------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           KAI  Y       Y+    D       P + G R K  N    +R I+ L R +G     
Sbjct: 190 KAIETYIMKRSDQYEPLFID-----HKPKYLGQRMKTRN---IRRIIKDLLRDIGFDDDK 241

Query: 261 -TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            TAH+LRH+ AT     G +    Q I+ H   +TT+IY +   K+   +   I  +   
Sbjct: 242 HTAHSLRHTTATLARQYGANKDDTQKIMRHSDPATTEIYMHAEIKSQHVYEHVIAQKLLN 301

Query: 320 SITQKDKKN 328
               +DKKN
Sbjct: 302 QEEDEDKKN 310


>gi|309810139|ref|ZP_07703985.1| phage integrase, N-terminal SAM domain protein [Lactobacillus iners
           SPIN 2503V10-D]
 gi|308169638|gb|EFO71685.1| phage integrase, N-terminal SAM domain protein [Lactobacillus iners
           SPIN 2503V10-D]
          Length = 326

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 109/248 (43%), Gaps = 25/248 (10%)

Query: 64  RQLSYTEIRAFISK----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           R ++  +IR ++S      ++ K+   +++R LS   SF  +L+      +S +  +  +
Sbjct: 88  RYITTEDIREYLSNYQLNHKSSKVTIDNIRRILS---SFFSWLEDEDYILKSPVRRIHKV 144

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K   S+    ++++   + D+        TK    R+ AI+ +L   G+R+ E + L   
Sbjct: 145 KTGQSIKETYSDEELEIMRDSC-------TK---IRDLAIIDMLASTGMRVGEMVLLNRD 194

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           ++  ++    + GKGDK RIV    +  K  LE Y     D   +    LF  +      
Sbjct: 195 DVNFEERECMVFGKGDKERIV-YFDARTKLHLEKY----LDSRTDNNSALFTSLSAPHER 249

Query: 240 PGV--FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
            G+   +  +R+L   LG+      H  R + AT  +  G  +  +Q +LGH R+ TT  
Sbjct: 250 LGIAGIEARLRKLGGELGI-YKVHPHKFRRTLATKAIDKGMPIEQLQKLLGHQRIDTTLQ 308

Query: 298 YTNVNSKN 305
           Y  V   N
Sbjct: 309 YAMVKQSN 316


>gi|295318249|gb|ADF98626.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum F str. 230613]
          Length = 264

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 100/224 (44%), Gaps = 22/224 (9%)

Query: 60  IQTIRQLSYTEIRAFIS---KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN- 115
           ++ I+ +   ++ +FIS   K      G R+  R +  I+ F KYLK +    ++NI   
Sbjct: 24  LEFIKSIILHDMYSFISYFQKSLNSSPGTRA--RKIVSIRQFWKYLKTKAHLIDNNIAEE 81

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +   K    +P+ LN ++++ L    LL           R+  I+ +   C LR+SE  S
Sbjct: 82  LETPKLPKRIPKYLNSEESVRL----LLECKKS-----PRDHCIITIFLNCALRLSELAS 132

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIR 234
           L    +  D   L + GK  K R + L P+ +KAI ++  +    ++N N    LF    
Sbjct: 133 LNIDQV--DNDILSVVGKDTKERKIFLTPAAKKAINDWLHIRNSINVNTN---ALFISRN 187

Query: 235 GKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNG 277
              +     Q  +++     GL P S + H LRH+ AT +   G
Sbjct: 188 SNRITTRAIQNIVKKYVITSGLDPKSISTHKLRHTAATLMYKYG 231


>gi|282860181|ref|ZP_06269256.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282587070|gb|EFB92300.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 406

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 141/317 (44%), Gaps = 49/317 (15%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + + I+R L    L +Y+      L  L  Y ++K  +  I  LS  + +AFI       
Sbjct: 123 ERIGIDRALKTFKLCTYQ------LSLLREYVQKKHKVCDI-PLSQLD-KAFIEGFEYYL 174

Query: 83  IGDRSLKRS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             DR LKRS     LS +++ ++   K+ +      L   + ++    PR++ +++   +
Sbjct: 175 TIDRRLKRSSISSALSTLQTIVRMALKKGVLDFYPFLGY-SYERPKGEPRSITKEELERI 233

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +D        E +W + R    L++ + C  GL IS+  +L  +NI+ ++  L I+G+  
Sbjct: 234 ID-------LEIEWENYRIVRDLFV-FSCFTGLAISDVRNLREENIVTEEGKLCIKGRRM 285

Query: 196 KIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL----NPGVFQRYIR 248
           K +    V +LP                  L I +  +RGIR   +       +    + 
Sbjct: 286 KTKTPYRVQVLPPA----------------LTI-MNRYRGIRAGFVFDVPTTDIVLNGMH 328

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQ+Y  V+S+   
Sbjct: 329 YIQRNIGMETPLTFHMARHTFASIITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIH 388

Query: 308 DWMMEIYDQTHPSITQK 324
             M  I  +   + T K
Sbjct: 389 RDMQAIQQRIQDTFTLK 405


>gi|186896896|ref|YP_001874008.1| integrase family protein [Yersinia pseudotuberculosis PB1/+]
 gi|186699922|gb|ACC90551.1| integrase family protein [Yersinia pseudotuberculosis PB1/+]
          Length = 351

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 22/147 (14%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           + ++ +    G R SEA  L    + + + T  I+ KG K R VP+         E YD 
Sbjct: 199 ATVVKICLSTGARWSEAEGLKLSQLTEHKITF-IKTKGRKNRTVPISK-------ELYDE 250

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLS 275
            P            +G  G  L    +  + R L+R  + LP    +H LRH+FA+H + 
Sbjct: 251 LPK-----------KGKSG--LFTACYAEFRRALKRSEIELPPGQLSHVLRHTFASHFMM 297

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVN 302
            GG++  +Q ILGH  +  T  Y++ +
Sbjct: 298 KGGNILVLQRILGHTDIKMTMRYSHFS 324


>gi|194446198|ref|YP_002043286.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194404861|gb|ACF65083.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
          Length = 326

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 22/144 (15%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +  L    G R +E  +L P  I   + T  ++ K  K R VP+   + K + E      
Sbjct: 184 VALLCLSTGGRWTEVATLKPAQITSCRVTF-LKTKNGKKRTVPISAELEKKVKEEASAKL 242

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNG 277
           F ++                    ++++   LRR    +P +   H LRH+FA+H + NG
Sbjct: 243 FKVD--------------------YEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNG 282

Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301
           G++ ++Q ILGH  +  T  Y ++
Sbjct: 283 GNIIALQQILGHASIQQTMAYAHL 306


>gi|23464983|ref|NP_695586.1| phage family integrase/recombinase protein [Bifidobacterium longum
           NCC2705]
 gi|23325582|gb|AAN24222.1| probable phage-family integrase/recombinase protein
           [Bifidobacterium longum NCC2705]
          Length = 276

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 70/147 (47%), Gaps = 23/147 (15%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           +L L    GLR+SE  ++  ++++  D   +L ++GKGDK RIVP+   + K I      
Sbjct: 133 MLRLGAEAGLRLSEIAAVHSRDVLEGDAGPSLIVRGKGDKQRIVPISEDLAKRITAAPGW 192

Query: 217 CPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYI-RQLRRYLGLPLSTTAHTLRHSFATHLL 274
                       LF G  RG      V + Y+ R L R L  P     H+LRH +AT + 
Sbjct: 193 ------------LFPGRWRGH-----VEKSYVSRHLTRLL--PDGWGPHSLRHRYATRMY 233

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301
               DL  +  +LGH  + TTQIY  +
Sbjct: 234 ETTHDLLLVSKLLGHSSVETTQIYVAM 260


>gi|311233617|gb|ADP86471.1| integrase family protein [Desulfovibrio vulgaris RCH1]
          Length = 395

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 91/202 (45%), Gaps = 20/202 (9%)

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
           +  E     ++  +K N   R L E +A TL+  +      E +  D  +SA+L L   C
Sbjct: 191 VNGECPCTRIKKPRKDNRRMRFLTEAEASTLLVEL------EKRSKDTHDSALLSLF--C 242

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDK-IRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           GLR  E  SLT  ++     T+ I+   +K  R   +   VR  ++E          LN 
Sbjct: 243 GLRAGEIHSLTWTDLNFTSGTIYIRDPKNKHSRHAYMTDEVRSMLIERSK------QLNA 296

Query: 226 QLPLFRGIRGKPLN--PGVFQRYIRQLRRYLGLPLS---TTAHTLRHSFATHLLSNGGDL 280
              +F    G   N     F+R + QL    G+  S      HTLRH+FA+ L+ +G  L
Sbjct: 297 TEYVFPAQNGAKRNWVSDTFERVVDQLGLNDGITDSRQRVVFHTLRHTFASWLVQDGTPL 356

Query: 281 RSIQSILGHFRLSTTQIYTNVN 302
            ++  ++GH  L  T+ Y++++
Sbjct: 357 YTVAELMGHTTLEMTKRYSHLS 378


>gi|239622583|ref|ZP_04665614.1| phage protein [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|239514580|gb|EEQ54447.1| phage protein [Bifidobacterium longum subsp. infantis CCUG 52486]
          Length = 279

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 70/147 (47%), Gaps = 23/147 (15%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           +L L    GLR+SE  ++  ++++  D   +L ++GKGDK RIVP+   + K I      
Sbjct: 136 MLRLGAEAGLRLSEIAAVHSRDVLEGDAGPSLIVRGKGDKQRIVPISEDLAKRITAAPGW 195

Query: 217 CPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYI-RQLRRYLGLPLSTTAHTLRHSFATHLL 274
                       LF G  RG      V + Y+ R L R L  P     H+LRH +AT + 
Sbjct: 196 ------------LFPGRWRGH-----VEKSYVSRHLTRLL--PDGWGPHSLRHRYATRMY 236

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301
               DL  +  +LGH  + TTQIY  +
Sbjct: 237 ETTHDLLLVSKLLGHSSVETTQIYVAM 263


>gi|110639719|ref|YP_679929.1| integrase [Cytophaga hutchinsonii ATCC 33406]
 gi|110282400|gb|ABG60586.1| integrase [Cytophaga hutchinsonii ATCC 33406]
          Length = 308

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 108/259 (41%), Gaps = 42/259 (16%)

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT----ESNILNMRNLKKSNS 124
            E++ F+ ++  Q +  +++K  L  +K  LK+  K K  T    +      R  +    
Sbjct: 51  VEVQTFVFQKLQQGLSQKTIKDMLIVLKMVLKFGAKNKWLTYHPFDIQFPTQREKQTIEV 110

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           L R    K         ++H   E      RN  I Y+    G+RI E  +LT +++  +
Sbjct: 111 LSRGDQRK---------VMHYVQEH--FTFRNLGI-YICLSAGIRIGEICALTWEDVDTE 158

Query: 185 QSTL-------RIQGKGDKIRIVPLL---PSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +  +       RI    D +R   L+   P  + +I E     P   +L   L   + I 
Sbjct: 159 RGIIHIRRTIQRIYNIEDGMRKTELMLDTPKTKNSIRE----IPMSGDLLKMLKPVKKII 214

Query: 235 G----------KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
                      KP  P  ++ Y ++L + L LP     H LRHSFAT  + +  D +++ 
Sbjct: 215 NNSFFVLTNDVKPTEPRTYRSYYKKLMKELALP-DLKFHGLRHSFATRCIESKCDYKTVS 273

Query: 285 SILGHFRLSTT-QIYTNVN 302
            +LGH  +STT  +Y + N
Sbjct: 274 VLLGHSNISTTLNLYVHPN 292


>gi|237794601|ref|YP_002862153.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
 gi|229261244|gb|ACQ52277.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
          Length = 355

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 45/195 (23%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG--CGLRISEALSLTPQNIMDD 184
           RALNE +   L+++               N   L +L G  CGLR+ E L LT  +I + 
Sbjct: 172 RALNENEENKLLEDF------------KSNKYYLVILLGLKCGLRLGEILGLTWSDIDEV 219

Query: 185 QSTLRIQGKGDKI----------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
             T+ I  +  ++                RI+P+  +    + ++  +    +N+N ++ 
Sbjct: 220 NKTIIINKQWKQVNPTKYNFGELKSKNSNRIIPISKNTLDELKKHKKI----VNINNRIF 275

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
            F+      +           L R L L     T H LRH++AT L+SNG D +++  +L
Sbjct: 276 KFKNTNSSCI----------CLNRLLKLKGYDITVHELRHTYATKLISNGVDFKTVAQLL 325

Query: 288 GHFRLSTTQIYTNVN 302
           GH    T + Y++VN
Sbjct: 326 GHTVEQTMKTYSHVN 340


>gi|261368880|ref|ZP_05981763.1| site-specific recombinase, phage integrase family [Subdoligranulum
           variabile DSM 15176]
 gi|282568975|gb|EFB74510.1| site-specific recombinase, phage integrase family [Subdoligranulum
           variabile DSM 15176]
          Length = 391

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 1/78 (1%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LFR   G P+ P  F    +++ +  GLP + + H+LRH+ A+ L++ G D+R++  +LG
Sbjct: 300 LFRQPSGDPMVPTTFTFRFKKILKENGLPQNLSVHSLRHTNASLLIAQGVDVRTVAGLLG 359

Query: 289 HFRLSTT-QIYTNVNSKN 305
           H + STT  IY +   K 
Sbjct: 360 HSQPSTTLDIYAHAFDKT 377


>gi|294506505|ref|YP_003570563.1| Phage integrase family protein [Salinibacter ruber M8]
 gi|294342833|emb|CBH23611.1| Phage integrase family protein [Salinibacter ruber M8]
          Length = 413

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 117/282 (41%), Gaps = 29/282 (10%)

Query: 35  TLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
           T +SY    R+F  F+   Y  E++    +    + E R +  + R       ++ R L 
Sbjct: 129 TFRSYRTTCRKFTAFIEETYGREEVPFGALEAELFREFRTYCYEERGNSTN--TVGRELG 186

Query: 94  GIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
            +++ +++ +K+ K++          +    S    L  ++   + D   L    E+   
Sbjct: 187 IMRTLVRHAMKEGKLS--GYPFEHITIDSEPSQKELLTPEEVERIAD---LEIDEESPAA 241

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-----TLRIQGKGDKIRIVPLLPSVR 207
           +AR    L+  Y  G+R S+  +L  Q+I + +S       +++   D +  VPL+P   
Sbjct: 242 EARR-WFLFAYYAGGMRFSDVATLQWQHIREGRSGRPRVCYKMKKTADTVG-VPLIPEA- 298

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGI---------RGKPLNPGVFQRYIRQLRRYLGLPL 258
           K IL YY+    +   +   P+  GI         R K        R++++L    G+  
Sbjct: 299 KEILGYYEEGDGE---DWVFPISEGIDPGDEEALHRRKCQRNSAANRHLKELAGRAGIEK 355

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             T H  R++ A  L  N GD+  +   LGH  +  TQ Y +
Sbjct: 356 RVTFHLSRNAAAWKLYQNVGDIYKVSKFLGHSNVEQTQDYID 397


>gi|303237560|ref|ZP_07324124.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302482279|gb|EFL45310.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 410

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 14/147 (9%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            ++ C  GL   +  +LTP NI  +DD+  +  + +   +    LL  + K+I+  Y   
Sbjct: 249 FIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSHK 308

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            +         LF  +  +  N      Y++++    G+  + T H  RH+FAT  LS G
Sbjct: 309 TYR-----DGKLFPILTNQKTNA-----YLKEIADICGIKKNLTFHLARHTFATMSLSKG 358

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSK 304
             + S+  +LGH  + TTQIY  + +K
Sbjct: 359 VPMESVSKMLGHTNIKTTQIYARITNK 385


>gi|255012810|ref|ZP_05284936.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 406

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 81/170 (47%), Gaps = 17/170 (10%)

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI 199
           ++L      K ++      ++ ++  GL  S+   L+P++++ D++  L I+    K +I
Sbjct: 232 IILAKEFTIKRVEQVRDVFVFCIFT-GLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKI 290

Query: 200 ---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
              +P+LP     + +Y D+      L   LP+    R           Y++++    G+
Sbjct: 291 MCNIPVLPVAASILDKYKDVVECTGKL---LPVLCNQR--------MNSYLKEIADVCGI 339

Query: 257 PLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             + + HT RHS+AT + L+NG  + ++  +LGH   S T+ Y  V  +N
Sbjct: 340 HKNLSTHTARHSYATSICLANGVSMENVAKMLGHADTSVTKHYARVLDQN 389


>gi|238764951|ref|ZP_04625889.1| Integrase [Yersinia kristensenii ATCC 33638]
 gi|238696810|gb|EEP89589.1| Integrase [Yersinia kristensenii ATCC 33638]
          Length = 330

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 22/148 (14%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           DAR  AIL L    G R +EA  L  ++I+ ++ T     K  K R VP+  SV   I  
Sbjct: 180 DARRVAILCL--STGARWNEAAGLRGEHIVGNRVTF-FNTKNGKSRSVPVANSVLSLIKT 236

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +               L+R      ++   F+  +R+++    LP     H +RH+FATH
Sbjct: 237 HR-----------TGQLYR------VDYLQFREILREVKP--DLPKGQATHVMRHTFATH 277

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            + NGG++ ++Q ILGH  +  T  Y +
Sbjct: 278 FMMNGGNIVTLQRILGHATIQQTMTYAH 305


>gi|313159042|gb|EFR58417.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 423

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 63/127 (49%), Gaps = 22/127 (17%)

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG-VF--------QRYIRQL 250
           V LLP V KAILE Y           ++P  R  R  P NPG VF           ++ +
Sbjct: 293 VKLLP-VAKAILEKY-----------RIPANRFNRLFPENPGKVFPVASLKSSDASLKHI 340

Query: 251 RRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            R  G+  +   HT RH+FAT + L NG  L ++  +LGH   +TTQIY  V ++  G+ 
Sbjct: 341 ARQCGIAKNLKFHTARHTFATTVSLMNGIPLETVSKMLGHKYTTTTQIYAKVTNQMIGNA 400

Query: 310 MMEIYDQ 316
           +  I D+
Sbjct: 401 ISRIEDK 407


>gi|291560453|emb|CBL39253.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2]
          Length = 264

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 98/207 (47%), Gaps = 21/207 (10%)

Query: 19  QNW-LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI-- 75
           QN+ LQ L  +R +S  T+ SY+   R +L +L        T  +I       ++ F   
Sbjct: 13  QNYFLQRLMQQRKVSYHTVCSYKDAFRLYLRYLEDVHGISATKVSINHFDLEYLQCFCKY 72

Query: 76  --SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
              KR+ + +   ++   ++ IKSF++Y+ +     E + ++ R L     LP   +E  
Sbjct: 73  LEEKRKNKPV---TINNRMAAIKSFMQYVAE--TAPEYSAISKRAL----MLPAQKHELP 123

Query: 134 ALTLVD---NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----DQS 186
            ++ +    N L+       +I AR+  +L L+Y  G+R+SE L +   +I      + +
Sbjct: 124 VMSFITKEFNALIQVCDTNTFIGARDKLMLLLMYNTGVRVSELLEIKVSDIHGADSVNHA 183

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEY 213
           ++ I GKG K R VPL  +  K I +Y
Sbjct: 184 SVIIHGKGRKQREVPLWKTTVKYINKY 210


>gi|325856178|ref|ZP_08172003.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483649|gb|EGC86616.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 406

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 143/322 (44%), Gaps = 59/322 (18%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + + I+R L    L++Y+      L  L  Y ++K  +  I  LS  + +AFI       
Sbjct: 123 ERIGIDRALKTFKLRTYQ------LSLLREYVQKKHKVSDI-PLSQLD-KAFIEGFEYYL 174

Query: 83  IGDRSLKRS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             DR LKRS     LS +++ ++   K+ +      L   + ++    PR++ +++   +
Sbjct: 175 TIDRKLKRSSVSSALSTLQTIVRMAVKKGVLDFYPFLGY-SYERPKGEPRSITQEELERI 233

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           ++        + +W + R    L++ + C  GL IS+  +L  +NI+ ++  L I+G   
Sbjct: 234 IE-------LKIEWENYRIVRDLFV-FSCFSGLAISDVRNLREENIVLEEGELCIKGSRM 285

Query: 196 KIRI---VPLLPSVRKAILEYY---------DLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           K +    V +LP    AI+E Y         D+   D+ LN                   
Sbjct: 286 KTKTPYRVQVLPPAW-AIMERYRGKRAGFVFDVPTTDIILN------------------- 325

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              +  ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQIY  V+
Sbjct: 326 --GMHHIQRNIGMESPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAVVS 383

Query: 303 SKNGGDWMMEIYDQTHPSITQK 324
           S+     M E+  +   + T K
Sbjct: 384 SERIHRDMQEVQQRIQDTFTLK 405


>gi|121594243|ref|YP_986139.1| phage integrase family protein [Acidovorax sp. JS42]
 gi|120606323|gb|ABM42063.1| phage integrase family protein [Acidovorax sp. JS42]
          Length = 566

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 118/311 (37%), Gaps = 58/311 (18%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +ERG  LS LT +    D   F  FL         I   R  S  E R FI       + 
Sbjct: 254 VERGRALSSLTTE----DAVAFRAFLRHPAPRARWIGPARPRSSPEWRPFIGG-----LS 304

Query: 85  DRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSLP--RALNEKQALTLVDN 140
            RS+  +LS + +  ++L +++  +      + +R   +S SL   R   E +  +++  
Sbjct: 305 ARSVAYALSVVGAMFRWLIQQRYLLANPFAGIKVRGASRSESLAVTRVFGEGE-WSVIQA 363

Query: 141 VLLHTSHETKW---IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKG 194
           V         W      R   +L   Y  GLRI E +  T   I  D      L + GKG
Sbjct: 364 VAEGLEWGHGWQAPAAQRLRFVLDFAYATGLRIGELVGATLGQIETDAHGDRWLHLVGKG 423

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-------------- 240
            K   V L P    A+  Y         +  +LP+    R  PL P              
Sbjct: 424 SKAGKVALPPLACAALDRYL--------MQRKLPITPA-RWDPLAPLIGSLDQESTAGIT 474

Query: 241 -----GVFQRYIRQLRRYLGLPLSTTA--------HTLRHSFATHLLSNGGDLRSIQSIL 287
                 V +R+  ++   +      TA        H +RH+ ATH L+ G +L +++  L
Sbjct: 475 ATRLWSVMRRFFTKVAEVIEKDSPATAEKLRRASPHWMRHTHATHALARGAELTTVRDNL 534

Query: 288 GHFRLSTTQIY 298
            H  +STT IY
Sbjct: 535 RHASISTTSIY 545


>gi|295701377|ref|YP_003610378.1| integrase [Burkholderia sp. CCGE1002]
 gi|295441700|gb|ADG20867.1| integrase family protein [Burkholderia sp. CCGE1002]
          Length = 570

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 123/312 (39%), Gaps = 60/312 (19%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +ERG  LS LT +    D   +  FL         +  +R  +  + R F        + 
Sbjct: 257 VERGRALSSLTTE----DAIAYRTFLRHPAPHARWVGPVRPRTSPDWRPF-----NGSLS 307

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            RS+  +LS + +  ++L +++    +    ++  + S +    L+   A T  +  L+ 
Sbjct: 308 ARSVAHALSILGALFRWLIEQRYVLANPFAGVKVREASGA--NVLDTSHAFTEGEWALVR 365

Query: 145 TSHET-----KWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDD---QSTLRIQGK 193
           T  +       W       + +LL   Y  GLR SE +  T  +I  D      LR+ GK
Sbjct: 366 TIADGLEWSYGWSAPAAHRLRFLLDFGYATGLRASELVGATLGHIETDARGDHWLRVTGK 425

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP------------- 240
           G K+  V L P    A+  Y            +LP+   +R +P  P             
Sbjct: 426 GRKLARVALPPLAWDALAHYL--------AERELPIA-PVRWRPETPVIGSLEADSESTI 476

Query: 241 ------GVFQRYIRQLRRYLGL---PLS-----TTAHTLRHSFATHLLSNGGDLRSIQSI 286
                 GV +R+     + +     PL+      + H +RH+ ATH L  G +L +++  
Sbjct: 477 SSVRLWGVLRRFFLVAAKSIEADHPPLAEKLRCASPHWMRHTHATHALGRGAELTTVRDN 536

Query: 287 LGHFRLSTTQIY 298
           L H  +STT IY
Sbjct: 537 LRHASVSTTSIY 548


>gi|229186763|ref|ZP_04313920.1| Integrase-recombinase [Bacillus cereus BGSC 6E1]
 gi|228596698|gb|EEK54361.1| Integrase-recombinase [Bacillus cereus BGSC 6E1]
          Length = 390

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 10/153 (6%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           N  IL  L   G RI E  +   +++  D +  L++ GKG K+R + +   + + I E  
Sbjct: 218 NYTILLALASTGARIQELCTARVKDLHYDGKHWLKVIGKGSKVRELFISEHLYECICEMR 277

Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266
               F   L+   + PLF   RG   N       +  + +   L          TAHT R
Sbjct: 278 RRRGFQTVLDRGDESPLFVNQRGNFYNSKTLSNQVTDMIKKTNLEFLQYRENPVTAHTFR 337

Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
           H+FA   +  G  DL  +   LGH  + TT+IY
Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370


>gi|227494283|ref|ZP_03924599.1| possible site specific recombinase [Actinomyces coleocanis DSM
           15436]
 gi|226832017|gb|EEH64400.1| possible site specific recombinase [Actinomyces coleocanis DSM
           15436]
          Length = 286

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 69/147 (46%), Gaps = 19/147 (12%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPS--VRKAILEYY 214
           IL L    GLR  E + +  ++I++D    +LR+ GKG+K RIVPL P    R+ I E  
Sbjct: 142 ILSLAAYVGLRREEIVKVHSKDIIEDILGYSLRVHGKGNKERIVPL-PELLARQVIAECA 200

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
               + L  NI             +  +  RY  +L     LP   T H LRH F T   
Sbjct: 201 RNAGYLLPGNI-------------DGHMSARYAGKLATRC-LPGDITLHMLRHRFGTVAY 246

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +   D+ ++Q ILGH   +TT+ Y  V
Sbjct: 247 NRSKDIAAVQDILGHTNPATTRRYIAV 273


>gi|207093368|ref|ZP_03241155.1| integrase/recombinase (xerD) [Helicobacter pylori HPKX_438_AG0C1]
          Length = 202

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 94/206 (45%), Gaps = 26/206 (12%)

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           N+   K   SLPR LN+K   + +  +L +    +   + RN  IL ++   GLR  E L
Sbjct: 8   NLAFAKTKESLPRHLNDKDLKSFLKTLLDYKPATS--FEKRNKCILLIVILGGLRKCEVL 65

Query: 175 SLTPQNIMDDQS--TLRIQGKGDK-----IRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           ++  ++I  ++   ++ IQGKG K     I+   L PS+   + + Y L  F+       
Sbjct: 66  NIELKHIQVEEQNYSILIQGKGRKERKAYIKKSLLEPSLNAWLSDEYRLKYFN-----GA 120

Query: 228 PLFRGIRGKPLN--------PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
            LF+  + K  N        P +F+  + Q++ Y      T  H  RHSFAT +     D
Sbjct: 121 YLFKKDKQKAQNSLTLYNFIPLIFK--LAQIKHYK--QYGTGLHLFRHSFATLIYQETQD 176

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKN 305
           L      LGH  L +T+IY +   ++
Sbjct: 177 LVLTSRALGHSSLLSTKIYIHTTQEH 202


>gi|317049649|ref|YP_004117297.1| integrase family protein [Pantoea sp. At-9b]
 gi|316951266|gb|ADU70741.1| integrase family protein [Pantoea sp. At-9b]
          Length = 343

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 95/225 (42%), Gaps = 31/225 (13%)

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKKSNSLPRALNEKQALTL 137
           R + +  R++   L+  ++    L++    T  N L N+R  K S S      E   LT+
Sbjct: 123 RVKTVTPRTVNLELAYFRAMFNELRRLDEWTAPNPLENVREFKISES------EMAYLTI 176

Query: 138 VD-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
            +   LL     ++  D   + I+ +    G R SEA  L    I   Q  + ++ KG K
Sbjct: 177 EEIRALLAECENSRSKDL--TTIVKICLATGARWSEAEGLKGNQIRAGQ-IIYVKTKGKK 233

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LG 255
            R VP+                    L  +LP  R  + + L    +  + + ++R  + 
Sbjct: 234 NRAVPITE-----------------KLQAELPSSR--KAQQLFATCYSAFRKAMQRAGIE 274

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            P     H LRH+FA+H + NGG++  +Q ILGH  +  T  Y +
Sbjct: 275 TPAGQLTHVLRHTFASHFMMNGGNILVLQRILGHTDIKVTMRYAH 319


>gi|293372055|ref|ZP_06618451.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|19068096|gb|AAL29907.1| putative integrase [Bacteroides fragilis]
 gi|292632989|gb|EFF51573.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 407

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 20/153 (13%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYY 214
           A ++ LY CGLR  +   LT +N+      L+ +    KG       ++P +   +L   
Sbjct: 255 AFIFCLY-CGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIP-LNDGLLSII 312

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL---GLPLSTTAHTLRHSFAT 271
              P D N  I             N   ++   + ++R++   G+    + H  RHSFA 
Sbjct: 313 GEAPVDKNCLI------------FNLPTYESCCKSVKRWVKRAGIDKHISWHCARHSFAV 360

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           ++L+NG +++++ S+LGH  L  T+ YT    K
Sbjct: 361 NILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|261346812|ref|ZP_05974456.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
 gi|282565212|gb|EFB70747.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
          Length = 325

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 22/141 (15%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP-FD 220
           L    G R  E  +L  + + + + T  ++ K  K RI+P+   + + I +  D  P FD
Sbjct: 187 LCLSTGARWGEGAALHSEQVQNGRVTF-LKTKNGKKRIIPISDKLSEQI-KTKDSGPLFD 244

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
           +N                    F+  +R L  +  LP     H LRH+FA+H + NGG++
Sbjct: 245 INYE-----------------TFRLALRNL--FPELPRGQATHVLRHTFASHFVMNGGNI 285

Query: 281 RSIQSILGHFRLSTTQIYTNV 301
            +++ ILGH  ++ T +Y ++
Sbjct: 286 VALKEILGHASINQTMVYAHL 306


>gi|182420569|ref|ZP_02643964.2| phage integrase [Clostridium perfringens NCTC 8239]
 gi|182379659|gb|EDT77138.1| phage integrase [Clostridium perfringens NCTC 8239]
          Length = 202

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 49/189 (25%)

Query: 152 IDARNSAILYLLYGCGLRISEALSL--TPQNIMDD--------QSTLRIQGKGDK----- 196
           ++ +N  +  L  G GLR+ E L+L  T  N  ++        +ST +I  KG++     
Sbjct: 5   MNNKNGMLYILALGTGLRLGEILALKWTDINFKNNYIDINKAIKSTYKIDSKGNREFQII 64

Query: 197 ---------IRIVPLLPSV--------------RKAILEYYDLCPFDLNLNIQLPLFRGI 233
                    IR VPL  ++              R + +E Y    FD NL    P+    
Sbjct: 65  EQQPKTKNSIRTVPLNDNLIELLQQHRKKQMIDRDSNIEIY----FDNNLVFSTPI---- 116

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            G  LN    ++  +++     L      H LRH+FAT L  NG   +++Q+ILGH  +S
Sbjct: 117 -GNYLNESNVRKTFKRILNKCNLK-ELRFHDLRHTFATRLFENGVPPKTVQTILGHSDIS 174

Query: 294 TT-QIYTNV 301
           TT  IYT+V
Sbjct: 175 TTLNIYTHV 183


>gi|323973234|gb|EGB68426.1| phage integrase [Escherichia coli TA007]
          Length = 331

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 90/222 (40%), Gaps = 46/222 (20%)

Query: 87  SLKRSLSGIKSFLKYLKKRKI-TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           S+ R L  + +    L   ++   E+ +  +R LK  N+    L++ +    +D +L   
Sbjct: 122 SINRDLCALSAMFSLLIDAEVYHNENPVRGIRKLKVQNTEMAFLSDDE----IDRLLKRL 177

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR------- 198
                  DAR  AIL L    G R  EA +L  ++I+ ++ T     K  K R       
Sbjct: 178 EG-----DARRIAILCL--STGARWKEASTLRGEHIVGNRVTF-FNTKNGKSRSVPVADS 229

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VPL+ + R  +L   D   F   L    P                           LP 
Sbjct: 230 VVPLIKTRRTGLLYQVDYLSFREILQEVKP--------------------------DLPK 263

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               H +RH+FATH + NGG++ ++Q ILGH  +  T  Y +
Sbjct: 264 GQATHVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYAH 305


>gi|317504561|ref|ZP_07962535.1| integrase [Prevotella salivae DSM 15606]
 gi|315664332|gb|EFV04025.1| integrase [Prevotella salivae DSM 15606]
          Length = 407

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 17/168 (10%)

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKI 197
            L+   +E +  + R + IL L   CGLR  +   LT +N+      L+ +    KG   
Sbjct: 239 ALIQCHYENENPNVRRAFILCLY--CGLRFCDVKDLTYKNVDYTNHLLKFEQNKTKGHSA 296

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
               ++P + + +L      P DL+ +I  LP +              + +++  +  G+
Sbjct: 297 HSGVIIP-LNEGLLSLIGEAPEDLSSSIFNLPSYESC----------SKSVKRWVKRAGI 345

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
               + H  RHSFA ++L+NG +++++ S+LGH  L  T+ YT    K
Sbjct: 346 NKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|217970537|ref|YP_002355771.1| integrase [Thauera sp. MZ1T]
 gi|217507864|gb|ACK54875.1| integrase family protein [Thauera sp. MZ1T]
          Length = 394

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 75/167 (44%), Gaps = 28/167 (16%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           +  LLY CGLRI+E  + T            DD   L + GKG+K RIVP    +   ++
Sbjct: 208 LFSLLYLCGLRITEVTTNTMGCFFSRRDRNGDDLWWLEVTGKGEKTRIVPATNELMMELV 267

Query: 212 EY---YDLCPFDLNLNIQLPLFRGIRG--KPLNPG--------VFQRYIRQLRRYLGLPL 258
            Y   Y L P+ +      PL   I G  + L  G        VF+R  +++       +
Sbjct: 268 RYRREYALAPYPVP-GEPTPLLLPIGGQRRALTRGAVHLVVKEVFERAAKRVEERGDEFV 326

Query: 259 S-------TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           S        +AH LRH+  +++     DLR ++  LGH  ++TT +Y
Sbjct: 327 SRANALRAASAHWLRHTAGSNMAGAEVDLRFVRDNLGHESITTTSLY 373


>gi|47566156|ref|ZP_00237184.1| phage integrase family domain protein [Bacillus cereus G9241]
 gi|47556709|gb|EAL15040.1| phage integrase family domain protein [Bacillus cereus G9241]
          Length = 308

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 6/174 (3%)

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
           E  +   R+ +I+ +L G GLR SE  SL   +I     TL + GK  K   +P+   V 
Sbjct: 133 EKTFYAYRDYSIIVVLLGTGLRQSELCSLKWTDIDFKYQTLSVFGKSRKRESIPVADKVL 192

Query: 208 KAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTL 265
             +  Y   C    +   +   +F     K L P   Q   ++L + +    +  ++HT 
Sbjct: 193 MELATYKTFCEQTFVEKGLSEYVFTNRSNKQLTPNAVQNVFKRLAKIMNFKDVRLSSHTF 252

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           RH+F    + +G    ++Q ++ H  +  T+ Y  +     G+ + E  D+ +P
Sbjct: 253 RHTFCQRCIQSGMSTFAVQRLMRHSSIVVTERYAAM----WGNDLKEQNDKFNP 302


>gi|312872314|ref|ZP_07732384.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2062A-h1]
 gi|311092137|gb|EFQ50511.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2062A-h1]
          Length = 372

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 117/271 (43%), Gaps = 47/271 (17%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSF---LKYLKKRKITTESNILNMR 117
           Q I +++  +++ +  K+ T+ +  R +   ++G+  +   L Y+        SN++   
Sbjct: 110 QFIDKITVVDLQKWADKKATELVAFRRVIAVMNGLFEYGMRLNYV-------SSNLVKRV 162

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL----YLLYGC-GLRISE 172
            + K  +  R   EK       NV      ET    A+N  I+    + +  C GLR SE
Sbjct: 163 LIPKKTARKRRDTEK-------NVYTRKELETFLKVAKNFPIMKYTFFKILACTGLRRSE 215

Query: 173 ALSLTPQNI----------------MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
            L+LT Q+I                ++ Q  ++        R +P+  S+RKA++EY   
Sbjct: 216 CLALTWQDIDFKNNLLHVNKTLAYGLNHQVIVQTPKSKKSNRKIPISSSLRKALIEYQKQ 275

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
              D        LF  + GK L  G    +++++          T H  RH+FAT L+S 
Sbjct: 276 ATHD-------KLFHTLNGKYLYLGTPNIWLKKIYDKNPDLKKITVHGFRHTFATLLISE 328

Query: 277 GG-DLRSIQSILGHFRLSTT-QIYTNVNSKN 305
                +++Q ILGH  +  T  +YT++N  N
Sbjct: 329 TNVKPKTVQMILGHKNIEITLNLYTHINQDN 359


>gi|253990065|ref|YP_003041421.1| type 1 fimbriae regulatory recombinase protein [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253781515|emb|CAQ84678.1| similar to type 1 fimbriae regulatory recombinase protein fimb o
           escherichia coli [Photorhabdus asymbiotica]
          Length = 206

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 72/160 (45%), Gaps = 3/160 (1%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
           R+  ++Y+ +  GLR+SEA  L   +I +DD+S    + KG      PLL    KAI  +
Sbjct: 27  RDYCLVYMSFVHGLRVSEARHLRLSDIDLDDESLYIRRLKGGFCTNHPLLGYEIKAIKAW 86

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            ++            LF    GKPL      + I QL R   + + +  H LRH+    L
Sbjct: 87  LEVRKTFRGAESDW-LFLSRYGKPLTRQRIYQLINQLGRQAKISVDSHPHMLRHACGFAL 145

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVN-SKNGGDWMME 312
              G D R IQ  LGH  +  T  YT  N  +  G W M+
Sbjct: 146 ADRGVDTRLIQDYLGHSNIRHTVRYTASNVERFHGVWSMK 185


>gi|89147388|gb|ABD62554.1| integrase [uncultured bacterium]
          Length = 163

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 38/64 (59%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           ++    QR  +Q      +    + H LRH FATHLL+ G D+R+IQ +LGH  L TT I
Sbjct: 99  ISDSTVQRAFKQAVVKAKIHKHASIHCLRHRFATHLLAAGTDIRTIQLLLGHRSLQTTMI 158

Query: 298 YTNV 301
           YT+V
Sbjct: 159 YTHV 162


>gi|319654079|ref|ZP_08008171.1| hypothetical protein HMPREF1013_04791 [Bacillus sp. 2_A_57_CT2]
 gi|317394272|gb|EFV75018.1| hypothetical protein HMPREF1013_04791 [Bacillus sp. 2_A_57_CT2]
          Length = 368

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 101/249 (40%), Gaps = 54/249 (21%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           +L R  S IK F +YL  ++I        ++++ +    P+  +E+    LV+  L    
Sbjct: 112 TLLRKSSVIKHFFRYLANKEIL-------LQDITRQMKRPKVNSEE----LVNRDLF--D 158

Query: 147 HETKWI-------DARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGD 195
           HE K I       D     + YLL   G+RI+E  +    N   + S     L++ GKG 
Sbjct: 159 HEVKQILAYFKKTDWFAYTLFYLLVSTGMRINELATAKWSNFRYEPSVDHFFLKVMGKGG 218

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG----------------------- 232
           K+R + +   V + + E         +LN Q+  F G                       
Sbjct: 219 KVRDIIIFNDVLEVVKE----NRRRKSLNTQIGTFCGTAFFPKANGKHYHTTYLSNEFTR 274

Query: 233 -IRGKPLN--PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
            +   PL+     F+R    L     +    T HT RH  A + + NG D +++Q +LGH
Sbjct: 275 VVNTAPLDFIQARFEREKEALEGGQSIKYRITPHTCRHYTAAYYMDNGIDPKALQDMLGH 334

Query: 290 FRLSTTQIY 298
             L TT+ Y
Sbjct: 335 SSLMTTERY 343


>gi|282881006|ref|ZP_06289696.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305082|gb|EFA97152.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
          Length = 407

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 14/159 (8%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            ++ C  GL   +  +LTP NI  +DD+  +  + +   +    LL  + K+I+  Y   
Sbjct: 249 FIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTNVETNVLLLDIPKSIIAKYSHK 308

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            +         LF  +  +  N      Y++++    G+  + T H  RH+FAT  LS G
Sbjct: 309 TYR-----DGKLFPILTNQKTNA-----YLKEIADICGIKKNLTFHLARHTFATMSLSKG 358

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + S+  +LGH  + TTQ+Y  + +K     M ++ D+
Sbjct: 359 VPMESVSKMLGHTNIKTTQLYARITNKKVEHDMEQLADK 397


>gi|168215898|ref|ZP_02641523.1| phage integrase [Clostridium perfringens NCTC 8239]
 gi|182382275|gb|EDT79754.1| phage integrase [Clostridium perfringens NCTC 8239]
          Length = 400

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 49/189 (25%)

Query: 152 IDARNSAILYLLYGCGLRISEALSL--TPQNIMDD--------QSTLRIQGKGDK----- 196
           ++ +N  +  L  G GLR+ E L+L  T  N  ++        +ST +I  KG++     
Sbjct: 203 MNNKNGMLYILALGTGLRLGEILALKWTDINFKNNYIDINKAIKSTYKIDSKGNREFQII 262

Query: 197 ---------IRIVPLLPSV--------------RKAILEYYDLCPFDLNLNIQLPLFRGI 233
                    IR VPL  ++              R + +E Y    FD NL    P+    
Sbjct: 263 EQQPKTKNSIRTVPLNDNLIELLQQHRKKQMIDRDSNIEIY----FDNNLVFSTPI---- 314

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            G  LN    ++  +++     L      H LRH+FAT L  NG   +++Q+ILGH  +S
Sbjct: 315 -GNYLNESNVRKTFKRILNKCNLK-ELRFHDLRHTFATRLFENGVPPKTVQTILGHSDIS 372

Query: 294 TT-QIYTNV 301
           TT  IYT+V
Sbjct: 373 TTLNIYTHV 381


>gi|169825501|ref|YP_001695676.1| tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41]
 gi|168994778|gb|ACA42317.1| Tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41]
          Length = 368

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 5/158 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AIL +L+G G+R +E + L  +++      L +  KGDK   V + PS    + EY 
Sbjct: 202 RDLAILAVLFGSGIRGNELVGLKIKDVYMKDCYLDVIRKGDKADSVAIRPSALTYLEEYL 261

Query: 215 DLCPFDLNLNIQLPLFRGIRGKP---LNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFA 270
                  ++    P F  +   P   +     Q  IR +++Y L      T H  R++F+
Sbjct: 262 KQRSKLYSVKTNYP-FVFVAKSPDGTVKQMSNQTLIRLVKKYTLAYGKEITPHKARYTFS 320

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
               + GG L  ++  LGH  + TT +YT  + K   D
Sbjct: 321 KQYQAQGGTLIGLRDQLGHQNIETTSLYTTESMKEQKD 358


>gi|310780212|ref|YP_003968544.1| integrase family protein [Ilyobacter polytropus DSM 2926]
 gi|309749535|gb|ADO84196.1| integrase family protein [Ilyobacter polytropus DSM 2926]
          Length = 235

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 9/156 (5%)

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKA 209
           W+  R+  +  + + CGLR SE  S+  ++   D+  +  +  KG +   V L       
Sbjct: 76  WM--RDKLLFLIAFECGLRASEVGSIKKEDFFSDKREMFCRRLKGSRNNTVKLTQDTSIL 133

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-HTLRHS 268
           +  + +  P     N    +F   +  P+      +  ++  +   LP+     HT++H+
Sbjct: 134 LENFMERYP-----NDSPYIFLSRKKLPITKFTLNKICKKYFKSAALPMEKAHFHTIKHT 188

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              H+   G D++ +Q ILGH  +  T IY +  +K
Sbjct: 189 SGVHMAEEGLDIKEVQYILGHRNVDNTMIYFDFTTK 224


>gi|282877432|ref|ZP_06286255.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281300484|gb|EFA92830.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 407

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 14/159 (8%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            ++ C  GL   +  +LTP NI  +DD+  +  + +   +    LL  + K+I+  Y   
Sbjct: 249 FIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSHK 308

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            +         LF  +  +  N      Y++++    G+  + T H  RH+FAT  LS G
Sbjct: 309 TYR-----DGKLFPILTNQKTNA-----YLKEIADICGIKKNLTFHLARHTFATMSLSKG 358

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + S+  +LGH  + TTQ+Y  + +K     M ++ D+
Sbjct: 359 VPMESVSKMLGHTNIKTTQLYARITNKKVEHDMEQLADK 397


>gi|169350996|ref|ZP_02867934.1| hypothetical protein CLOSPI_01773 [Clostridium spiroforme DSM 1552]
 gi|169292058|gb|EDS74191.1| hypothetical protein CLOSPI_01773 [Clostridium spiroforme DSM 1552]
          Length = 340

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 122/279 (43%), Gaps = 19/279 (6%)

Query: 29  RGLSKLTLQSYECDTRQFLIFL---AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           R LS  T++SY+   + +L F+        +KIT +   + + T+   +I   +  +   
Sbjct: 27  RNLSDKTIESYKTSIKLYLRFINKEKHIINDKITFEIFSRENMTD---YIIWLKNNQASP 83

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           +++   ++ +KSFLKY  +          N ++++   ++ + + E         +L   
Sbjct: 84  KTINLRMTALKSFLKYASEEDFELTVFYNNAKSIRGQKTIKKPI-EYLKPEATKAILSAY 142

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLL 203
            ++TK    RN  +L L+Y  G R+ E   L   ++  D S   + + GKG K+R VPL 
Sbjct: 143 GNDTK-KHRRNQVLLILMYDSGCRVQELSDLKVSSLHLDVSCPYITVIGKGKKLRNVPLT 201

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP--LNPGVFQRYIRQLRRYL-----GL 256
                 + +Y D    D +++  L  +  +  KP  L+       ++Q  +        +
Sbjct: 202 TKTVCHLKKYLDEF-HDESIDEYL-FYSNLDNKPHQLSTDSIALILKQAVKIAREKNESV 259

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           P     H +R + A  L  NG  L  I  +LGH  +STT
Sbjct: 260 PKKVHCHMIRKTKAMDLYKNGVPLPFIMQLLGHESMSTT 298


>gi|324323967|gb|ADY25010.1| integrase family protein [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 390

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 10/153 (6%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           N  IL  L   G RI E  +   +++  D +  L++ GKG K+R + +   + + I E  
Sbjct: 218 NYTILLALASTGARIQELCTTRVKDLHYDGKHWLKVIGKGSKVRELFISEHLYECICEMR 277

Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266
               F   L+   + PLF   RG   N       +  + +   L          TAHT R
Sbjct: 278 RRRGFQTVLDRGDESPLFVNQRGNFYNSKTLSNXVTDMIKKTNLEFLQYRENPVTAHTFR 337

Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
           H+FA   +  G  DL  +   LGH  + TT+IY
Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370


>gi|260912329|ref|ZP_05918879.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260633556|gb|EEX51696.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 410

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 14/147 (9%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            ++ C  GL   +  +LTP NI  +DD+  +  + +   +    LL  + K+I+  Y   
Sbjct: 249 FIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSHK 308

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            +         LF  +  +  N      Y++++    G+  + T H  RH+FAT  LS G
Sbjct: 309 TYR-----DGKLFPILTNQKTNA-----YLKEIADLCGVKKNLTFHLARHTFATMSLSKG 358

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSK 304
             + S+  +LGH  + TTQIY  + +K
Sbjct: 359 VPMESVSKMLGHTNIKTTQIYARITNK 385


>gi|313896449|ref|ZP_07830000.1| site-specific recombinase, phage integrase family [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312974873|gb|EFR40337.1| site-specific recombinase, phage integrase family [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 331

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 113/252 (44%), Gaps = 31/252 (12%)

Query: 63  IRQLSYTEIRAFISK----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
           I +++  ++R ++S+     R  K    +++R LS   SF  +L++     +S +  +  
Sbjct: 92  ITRITTDDLRKYLSEYQEEHRCSKSNIDNIRRILS---SFFAWLEEENYILKSPVRRIHK 148

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           +K +  +     ++    + DN            ++R+ A++ LL   G+R+ E + L  
Sbjct: 149 IKTAKVVKETYTDEALEQMRDNC----------TNSRDLAMIDLLASTGMRVGELVRLNR 198

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI-LEYYDLCPFDLNLNIQLPLFRGIRGKP 237
            ++  +     + GKG K R  P+    R  I L+ Y     D  ++    LF  ++ KP
Sbjct: 199 SDVDFESRECIVFGKGSKER--PVYFDARTKIHLKNY----LDSRIDDNPALFVSLQ-KP 251

Query: 238 LN----PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            N     GV  R +R + + LG+P     H  R + AT  +  G  +  +Q +LGH ++ 
Sbjct: 252 HNRLHISGVEIR-LRDMGKKLGIP-KVHPHKFRRTLATRAIDKGMPIEQVQQLLGHSKID 309

Query: 294 TTQIYTNVNSKN 305
           TT  Y  V+  N
Sbjct: 310 TTMEYAMVDQNN 321


>gi|254884944|ref|ZP_05257654.1| transposase [Bacteroides sp. 4_3_47FAA]
 gi|319642539|ref|ZP_07997189.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|254837737|gb|EET18046.1| transposase [Bacteroides sp. 4_3_47FAA]
 gi|317385891|gb|EFV66820.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
          Length = 409

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 138/318 (43%), Gaps = 42/318 (13%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
            +GN   ++   +LL +R N      +    +  T+ +Y    R    F+   TE K++ 
Sbjct: 100 FQGNAGMQMTLLKLL-DRHNEEMKARVGVDRAPTTMSTYVYTRRTLAEFIK--TEFKVSD 156

Query: 61  QTIRQLSYTEIRAF----ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
               QL+   IR +    + K+   K+   +++  LS +K   +   K   + + +  + 
Sbjct: 157 LAFGQLNEQFIRDYQDFCLEKK---KLAMETVRHYLSILKKICRIAYKEGHSEKYHFCHF 213

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL---YLLYGC--GLRIS 171
           +  K+  + P+AL+ +    L D          +  + R S ++     L+ C  G   +
Sbjct: 214 KLPKQKETTPKALSRENFEKLRD---------LEIPEKRRSHVITRDLFLFACYTGTAYA 264

Query: 172 EALSLTPQNIM-DDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           +A+S+T +N+  DD+ +L ++    K D +  V LLP     I +Y D        + ++
Sbjct: 265 DAVSITRENLFQDDEGSLWLKYRRKKTDYLGRVKLLPEALALIGKYRD--------DTRI 316

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSI 286
            LF      P +    +  ++ LR   GL      H  RHSFA+ + L  G  + +I  +
Sbjct: 317 TLF-----PPQDYHTLRANMKSLRLMAGLSQDLVYHMGRHSFASLVTLEEGVPIETISKM 371

Query: 287 LGHFRLSTTQIYTNVNSK 304
           LGH  + TTQIY  V  K
Sbjct: 372 LGHSNIKTTQIYARVTPK 389


>gi|218232818|ref|YP_002365323.1| integrase/recombinase [Bacillus cereus B4264]
 gi|218160775|gb|ACK60767.1| integrase/recombinase [Bacillus cereus B4264]
          Length = 308

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 98/210 (46%), Gaps = 9/210 (4%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L  ++SF  +L K K+  ++ + N++ L+        L+ ++   L+  +      +  +
Sbjct: 88  LRALRSFYNFLDKNKLIDKNPMKNIKLLRDRQKTIETLDNQEIEKLIKTI----RKQKTF 143

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           +  R+  IL +    G+R+SE + +  +++  ++  +R + K    R V L  + ++  L
Sbjct: 144 VGFRDEVILLVFLDTGVRLSELVGINVEDVRYNKLIIR-RTKNLFERTVYLSDTTQER-L 201

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           E Y     ++  N    LF     K LNP   Q  + +  +   +    + HT RH+ A 
Sbjct: 202 ESYIKVRGEVATN---KLFISQDNKELNPHSIQTRLTKYGKEAKISKRVSPHTFRHTMAK 258

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            ++ +G D  S+  +LGH  ++ T+ Y N+
Sbjct: 259 RMIVSGLDAFSLMHLLGHTDITVTKRYVNL 288


>gi|288799612|ref|ZP_06405071.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332860|gb|EFC71339.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 410

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 14/147 (9%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            ++ C  GL   +  +LTP NI  +DD+  +  + +   +    LL  + K+I+  Y   
Sbjct: 249 FIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSHK 308

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            +         LF  +  +  N      Y++++    G+  + T H  RH+FAT  LS G
Sbjct: 309 TYR-----DGKLFPILTNQKTNA-----YLKEIADLCGVKKNLTFHLARHTFATMSLSKG 358

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSK 304
             + S+  +LGH  + TTQIY  + +K
Sbjct: 359 VPMESVSKMLGHTNIKTTQIYARITNK 385


>gi|145589869|ref|YP_001156466.1| phage integrase family protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145048275|gb|ABP34902.1| phage integrase family protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 190

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 85/185 (45%), Gaps = 21/185 (11%)

Query: 132 KQALTLVDN----VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           KQA TL       VL H +  T+   ARN A+L + +  GLR++E  SL   +++D +  
Sbjct: 2   KQAKTLTAQELRRVLDHIA--TRKHCARNRAMLLITHYAGLRVAEMASLRFADVVDAEGA 59

Query: 188 LR-------IQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIR--GKP 237
           ++        Q KG   R V +   ++K +  Y  +  P D     Q  LF   +     
Sbjct: 60  IKNEIMLRPEQAKGGDARTVFISEKLKKELSAYIKIYTPND----PQEKLFYSQKKSSDG 115

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
            N     ++   L +   +P   ++H+ R SF T+L + G  +R I  + GH +LS+ Q 
Sbjct: 116 FNANTATQFFHYLYQRAAIP-GASSHSGRRSFITNLAAKGVGVRVIMGLSGHRQLSSVQH 174

Query: 298 YTNVN 302
           Y + N
Sbjct: 175 YIDCN 179


>gi|190410500|ref|YP_001965320.1| putative integrase [Streptococcus thermophilus]
 gi|84316431|gb|ABC55707.1| putative integrase [Streptococcus thermophilus]
          Length = 314

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 120/285 (42%), Gaps = 31/285 (10%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T+++Y+   RQF  +LA        I  IRQ    ++ AF    +   +   +++  ++ 
Sbjct: 38  TVETYKKALRQFFNYLA--------INGIRQPQREDVLAFRDDLKASGLKPTTVQNYITA 89

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
            + F K+ ++  +    NI       K   N     L  +QA  ++ ++   T       
Sbjct: 90  TRIFFKWTEQEGLY--PNIAEHVKGAKLDKNHKKDYLTSRQAKEVLASIETDTEE----- 142

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKG--DKIRIVPLLPSVRK 208
             RN AIL L+   GLR  E       ++  + + + L +QGKG  +K   + +   V K
Sbjct: 143 GLRNYAILSLMVTGGLRTIEVSRADVGDLRTVGENTVLFLQGKGREEKTEYIKISAPVEK 202

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGI----RGKPLNPGVFQRYIRQLRRYLGLPLST-TAH 263
           AI  Y        N+    PLF       RGK ++       ++   +  G   +  TAH
Sbjct: 203 AIRNYLKARG---NVEEGQPLFTSTSNNSRGKRISTRTVSAIVKNALKNAGYDSARLTAH 259

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV--NSKNG 306
           +LRH+  T  L  G ++  +Q    H  L+TT IY +    +KNG
Sbjct: 260 SLRHTAITLALLAGREITEVQQFARHANLNTTMIYNHALDQAKNG 304


>gi|261879768|ref|ZP_06006195.1| integrase [Prevotella bergensis DSM 17361]
 gi|270333565|gb|EFA44351.1| integrase [Prevotella bergensis DSM 17361]
          Length = 407

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 14/159 (8%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            ++ C  GL   +  +LTP NI  +DD+  +  + +   +    LL  + ++I+  Y   
Sbjct: 249 FIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTNVETNVLLLDIPRSIIAKYSHK 308

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            +         LF  +  +  N      Y++++    G+  + T H  RH+FAT  LS G
Sbjct: 309 TYR-----DGKLFPILTNQKTNA-----YLKEIADICGIKKNLTFHLARHTFATMSLSKG 358

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + S+  +LGH  + TTQIY  + +K     M ++ D+
Sbjct: 359 VPMESVSKMLGHTNIKTTQIYARITNKKVEHDMEQLADK 397


>gi|325854096|ref|ZP_08171486.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325484207|gb|EGC87139.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 410

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 14/147 (9%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            ++ C  GL   +  +LTP NI  +DD+  +  + +   +    LL  + K+I+  Y   
Sbjct: 249 FIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSHK 308

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            +         LF  +  +  N      Y++++    G+  + T H  RH+FAT  LS G
Sbjct: 309 TYR-----DGKLFPILTNQKTNA-----YLKEIADLCGVKKNLTFHLARHTFATMSLSKG 358

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSK 304
             + S+  +LGH  + TTQIY  + +K
Sbjct: 359 VPMESVSKMLGHTNIKTTQIYARITNK 385


>gi|300781921|ref|YP_003739156.1| phage integrase [Erwinia billingiae Eb661]
 gi|308186479|ref|YP_003930610.1| Tyrosine recombinase xerC [Pantoea vagans C9-1]
 gi|299060187|emb|CAX53378.1| phage integrase [Erwinia billingiae Eb661]
 gi|308056989|gb|ADO09161.1| Tyrosine recombinase xerC [Pantoea vagans C9-1]
          Length = 327

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 133/312 (42%), Gaps = 40/312 (12%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL ER  WLQ L  + G ++ TL +Y    R +    AF ++  I  +  R   + ++ A
Sbjct: 11  LLAER--WLQLLS-DLGRAQATLTAYRNALRHYF---AFCSQNGIKPEKAR---FEDLAA 61

Query: 74  FISKRRTQ---KIGDRSLKRSLSGIK---SFLKYLKKRKIT------TESNILNMRNL-K 120
           +IS +           +L+  LS I+    FL YL    +       T   + + R L  
Sbjct: 62  YISPQLPGMPFSAASATLQLRLSAIRLWYDFLMYLDLCTVNPLPRSGTPGMLSSGRGLVP 121

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +   LPR  ++ Q        L H +        R+  +L L Y   LR SE  SL+  +
Sbjct: 122 RVVKLPRIPDDAQ----WQCFLYHAAASP----LRDRLMLALTYYGALRRSEITSLSIDD 173

Query: 181 IMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI---- 233
                  +RI+    K  + RIV   P+V   +  +  L        ++  LFR      
Sbjct: 174 FDFAHRLIRIRAETTKSRRERIVCYSPAVVPVLAAH--LMQMKRTGIVRGALFRSESDRN 231

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           +G PL+   + + +R+     G+P   + HT RH   THL   G  L  + +  GH  L+
Sbjct: 232 QGGPLSFWTWSKTVRKWALESGMP-DISTHTFRHLRLTHLARAGWKLHELATYAGHRDLT 290

Query: 294 TTQIYTNVNSKN 305
           TTQIY +++ ++
Sbjct: 291 TTQIYIHLSGRD 302


>gi|196044477|ref|ZP_03111712.1| transposition regulatory protein TnpA [Bacillus cereus 03BB108]
 gi|196024512|gb|EDX63184.1| transposition regulatory protein TnpA [Bacillus cereus 03BB108]
          Length = 371

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 103/218 (47%), Gaps = 31/218 (14%)

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           S  KSFL ++ K K     +I N+  LK+     + L ++Q    V  VL  T+      
Sbjct: 143 SRYKSFLHHINKDK----PSIRNVLKLKEPRKKLKILTKEQ----VQQVLNATT------ 188

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKGD-----KIRIVPLLP 204
           + R++ ++ LL+  GLRI E LSL  ++ + D +    +R+  +G+     K++      
Sbjct: 189 NIRDTFLIQLLFETGLRIGEVLSLFIEDFIFDHAKGHRIRLVDRGELENGAKLKTGEREI 248

Query: 205 SVRKAILEYYD------LCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLP 257
            V +++++ YD      +   D++ N      RG   GKP+     +   ++L++  G+ 
Sbjct: 249 FVSQSLMDLYDDYLYEIMDELDVDTNFVFIKLRGENAGKPMTYSDVESLFKRLKKKTGIN 308

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           L    H  RH+ AT       +++ +Q  LGH ++ TT
Sbjct: 309 LH--PHLFRHTHATIYYQKTKNIKQVQERLGHSQIQTT 344


>gi|312887800|ref|ZP_07747387.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311299619|gb|EFQ76701.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 409

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 18/148 (12%)

Query: 162 LLYGC--GLRISEALSLTPQNIM-----DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
            L+ C  GL   + ++LT  NI+     +D      Q     +RI PLLP   + I +Y 
Sbjct: 253 FLFSCYTGLAYIDTMNLTAGNIVKGIDGNDWLITSRQKTDTDVRI-PLLPQAEELIKKYQ 311

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL- 273
           D  P  +N     P+   I  +  N      Y++++     +  + T H  RH+FAT + 
Sbjct: 312 D-HPKAVNHGTLFPV---ISNQKTNA-----YLKEIADLCNINKAITFHIARHTFATTIT 362

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LSNG  + S+  +LGH  + +TQ+Y  V
Sbjct: 363 LSNGVPIESVSKMLGHTTIRSTQVYAKV 390


>gi|254168847|ref|ZP_04875688.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|254169391|ref|ZP_04876219.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|197621670|gb|EDY34257.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|197622284|gb|EDY34858.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
          Length = 299

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 87/210 (41%), Gaps = 37/210 (17%)

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETK---WI-------------------DARNSAIL 160
           N   +ALN   A    D  L +  H TK   WI                   D RN A+L
Sbjct: 64  NYYVKALNRYFAFRGADIKLKYYRHRTKDTIWIPTDDEVKRILSVRWRRYDQDLRNRAML 123

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPF 219
           ++ +  G+R+ E ++L   ++ +    L I+  K    R+VP+ P V + +++Y  +   
Sbjct: 124 HIAFSTGVRLGELIALNWADLDETNHLLEIRTEKSGGTRLVPIPPKVLELLIQYRKVRIL 183

Query: 220 -DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT---AHTLRHSFATHLLS 275
            D N      +F    G+  N      Y R++ +  G         +H  RH  A   L 
Sbjct: 184 SDPN-----AMFTTYGGRISNA-----YARKIFKEAGERAGVKKFHSHAARHWRAVKWLE 233

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            G  L +I+ +LGH  L +TQIY    S N
Sbjct: 234 EGLSLETIRRLLGHSSLKSTQIYLRARSVN 263


>gi|145298598|ref|YP_001141439.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142851370|gb|ABO89691.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 351

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 68/157 (43%), Gaps = 34/157 (21%)

Query: 152 IDARNSAILYLLYGC---GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
           +++ N+ +L ++  C   G R SE   LT   +  ++ T   + K  K R VP+ P    
Sbjct: 200 VESPNTDLLMVVKLCLATGARWSEVEELTQSQVSPNRVTF-TRTKSKKSRSVPISP---- 254

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-----RRYLGLPLSTTAH 263
                         L +QLP  RG         +F    R       R  L LP     H
Sbjct: 255 -------------ELYVQLPRKRGR--------LFSDCYRAFEMVVERAGLELPPGQNTH 293

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            LRH+FA+H + NGG++  +Q ILGH  ++ T  Y +
Sbjct: 294 VLRHTFASHFMMNGGNILVLQKILGHSTIAMTMRYAH 330


>gi|23455849|ref|NP_695079.1| putative integrase [Streptococcus phage O1205]
 gi|2444081|gb|AAC79517.1| ORF1 [Streptococcus phage O1205]
          Length = 359

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 7/145 (4%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           A LY++   G+R +E L LT  +I  D   L +    D       +P+  K+ +    L 
Sbjct: 191 AALYIISKTGIRFAECLGLTVDDIKRDTGMLSVNKTWDYKNNTGFMPTKTKSSIREIPLD 250

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
              +N   QLP     R   L P +    + + LR+ +G  +    H+LRH++A++L+++
Sbjct: 251 DEFINFIDQLPPTDDGR---LLPSLSNNAVNKTLRKIVGREVR--VHSLRHTYASYLIAH 305

Query: 277 GGDLRSIQSILGHFRLSTT-QIYTN 300
             DL S+  +LGH  L+ T ++Y +
Sbjct: 306 DIDLISVSQVLGHENLNITLEVYAH 330


>gi|171321805|ref|ZP_02910710.1| integrase family protein [Burkholderia ambifaria MEX-5]
 gi|171092906|gb|EDT38154.1| integrase family protein [Burkholderia ambifaria MEX-5]
          Length = 578

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 130/319 (40%), Gaps = 65/319 (20%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +ERG  LS LT +    D   +  F+   T  +  +  +R     + R F     +  + 
Sbjct: 258 VERGRALSSLTTE----DAVAYRAFIRRPTPHERWVGPVRPRGAPDWRPF-----SGGLS 308

Query: 85  DRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSL--PRALNEKQAL---TL 137
            RS   +LS + +  ++L +++  +      + +R+ + +N+L    A  E + L   T+
Sbjct: 309 ARSAAYTLSVLGALFRWLIEQRYLLANPFAGVKVRDTRGANALDTSHAFTEGEWLLVRTI 368

Query: 138 VDNVLLHT-----SHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDD---QS 186
            D +         +  + W  A    + ++L   Y  GLR SE +  T  +I  D    +
Sbjct: 369 ADGLEFRKDKPSGAPASGWTPAAAQRLRFILDFGYATGLRASELVGATLGDIDTDAHGDA 428

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP------ 240
            L++ GKG K   V L P  R A+  Y         +  +LP+   +R +P  P      
Sbjct: 429 WLKVIGKGSKAARVALPPLARTALDRYL--------VARRLPVT-PVRWRPDTPLIPSLA 479

Query: 241 -------------GVFQRYIRQLRRYLGL--PL------STTAHTLRHSFATHLLSNGGD 279
                         V QR+  Q    +    P         + H +RH+ ATH L+ G +
Sbjct: 480 EDGAAAITSVRLWKVMQRFFAQTAALVDADNPALAQKLRQASPHWMRHTHATHALARGAE 539

Query: 280 LRSIQSILGHFRLSTTQIY 298
           L +++  L H  +STT IY
Sbjct: 540 LTTVRDNLRHASISTTSIY 558


>gi|24217183|ref|NP_714666.1| site-specific integrase/recombinase XerD-like protein [Leptospira
           interrogans serovar Lai str. 56601]
 gi|45655681|ref|YP_003490.1| phage-related integrase/recombinase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24202229|gb|AAN51681.1| XerD-related integrase [Leptospira interrogans serovar Lai str.
           56601]
 gi|45602652|gb|AAS72127.1| phage-related integrase/recombinase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 299

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 125/269 (46%), Gaps = 41/269 (15%)

Query: 60  IQTIRQLSYTEIRAF-----------ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT 108
           I+ IRQ +Y +  A+            + +  +KI  + L R       ++ +LKKRK++
Sbjct: 18  IKIIRQRNYKKATAYTYMKYNLDFLHFADKPAEKITVKDLNR-------YMDHLKKRKVS 70

Query: 109 TESNILNMRNLK-------KSNSLP------RALNEKQALTL--VDNVLLHTSHETKWID 153
           + +  +N+ +LK       K N         R  N   A+T   + N+L     +T   +
Sbjct: 71  SSTIQINVSSLKMFFEDVMKMNLFQDFQRPVREYNNPNAITYKEMQNIL-----KTASSN 125

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG-DKIRIVPLLPSVRKAILE 212
           A++  +  L+Y  GLR+ E +SL    I   + +++I+     + R V + P    A+++
Sbjct: 126 AKHELMCGLVYFGGLRVGELISLRWAYIDTKRKSIQIKSPILSQSRTVEI-PVELGALVK 184

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
            Y+    + + N  L   + +     +  V +R I ++ +  G+    T  TLRHS A H
Sbjct: 185 KYEREIVNSSSNTYLFPGKSLGSHTTSRNV-ERIISEIGKNSGISSPVTVFTLRHSRALH 243

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           L+++G  L  ++  LGH  L++T+ Y  V
Sbjct: 244 LIADGSSLNQVKDFLGHKTLASTESYLPV 272


>gi|186687205|ref|YP_001870348.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186469508|gb|ACC85307.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
          Length = 309

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 120/292 (41%), Gaps = 43/292 (14%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+      G +  ++++Y+  TR+FL FL          + +++++Y ++  + S    
Sbjct: 31  WLE------GKASSSIRAYQRYTRRFLDFLD---------KPLKKVTYEDLVEYASSFGG 75

Query: 81  QKIGDRSLKR-SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                 S KR  ++  KS + +  K          N+    K   LP  +NE+  L   D
Sbjct: 76  NA---ESTKRIYIAAAKSLISFAHKIGYLP----FNVGMALKLGELPDVINERY-LDEAD 127

Query: 140 NVLLHTSHETKWIDA----------RNSAILYLLYGCGLRISEALSLTPQNIM---DDQS 186
             LL  +      DA          RN  I+ LLY  GLR SE   LT  ++    D   
Sbjct: 128 IKLLVRAASKHLTDAKTPKRQYTALRNLLIIKLLYQAGLRASEICELTWGDLTPRGDSGQ 187

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
               + KG K R + + P +   ++E+ D      N +    +F   +G  L+       
Sbjct: 188 VYVRKAKGSKNRTILIKPKLWAELIEFKD------NAHSNQAVFPSQKGGHLDRQNLHPI 241

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           ++ +    GL    +AH LRH+  +H +  G +   ++  LGH  L+ T  Y
Sbjct: 242 VKAIALEAGLSELVSAHWLRHAHGSHAIERGTNPVLVKETLGHANLAITDRY 293


>gi|325856124|ref|ZP_08171976.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|327313880|ref|YP_004329317.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|325483681|gb|EGC86647.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|326945479|gb|AEA21364.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 406

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 138/319 (43%), Gaps = 53/319 (16%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEIRAFISKRRT 80
           + + I+R L  L L++Y+      L  L  Y ++K  +  I   QL  T I  F      
Sbjct: 123 ERIGIDRALKTLKLRTYQ------LSLLREYVQKKYKVSDIPLSQLDNTFIEGF----EY 172

Query: 81  QKIGDRSLKRSLSGI-----KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
               DR LKRS         ++ ++   K+ +      L   + ++    PR++ + +  
Sbjct: 173 YLTIDRQLKRSSISSTLSTLQTIVRMAVKKGVLDFYPFLGY-SYERPKGEPRSITQDELQ 231

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGK 193
            ++D        E +W + R    L++ + C  GL IS+  +L  +NI+ ++  L I+G+
Sbjct: 232 KIID-------LEIEWENYRIVRDLFV-FSCFSGLAISDVRNLREENIVLEEGELCIKGR 283

Query: 194 GDKIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL----NPGVFQRY 246
             K +    V +LP    AI+E Y                RG R   +       V    
Sbjct: 284 RMKTKTPYRVQVLPPAW-AIMERY----------------RGKRAGFVFDVPTTDVILNG 326

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           I  ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQIY  V+S+ 
Sbjct: 327 IHHIQRNIGMETPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAAVSSER 386

Query: 306 GGDWMMEIYDQTHPSITQK 324
               M ++  +   + T K
Sbjct: 387 IHRDMQKVQQRIQDTFTLK 405


>gi|167768479|ref|ZP_02440532.1| hypothetical protein CLOSS21_03038 [Clostridium sp. SS2/1]
 gi|167710003|gb|EDS20582.1| hypothetical protein CLOSS21_03038 [Clostridium sp. SS2/1]
          Length = 266

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 98/207 (47%), Gaps = 21/207 (10%)

Query: 19  QNW-LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI-- 75
           QN+ LQ L  +R +S  T+ SY+   R +L +L        T  +I       ++ F   
Sbjct: 15  QNYFLQRLMQQRKVSYHTVCSYKDAFRLYLRYLEDVHGISATKVSINHFDLEYLQCFCKY 74

Query: 76  --SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
              KR+ + +   ++   ++ IKSF++Y+ +     E + ++ R L     LP   +E  
Sbjct: 75  LEEKRKNKPV---TINNRMAAIKSFMQYVAE--TAPEYSAISKRAL----MLPAQKHELP 125

Query: 134 ALTLVD---NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----DQS 186
            ++ +    N L+       +I AR+  +L L+Y  G+R+SE L +   +I      + +
Sbjct: 126 VMSFITKEFNALIQVCDTNTFIGARDKLMLLLMYNTGVRVSELLEIKVSDIHGADSVNHA 185

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEY 213
           ++ I GKG K R VPL  +  K I +Y
Sbjct: 186 SVIIHGKGRKQREVPLWKTTVKYINKY 212


>gi|302346838|ref|YP_003815136.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302151069|gb|ADK97330.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 410

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 14/147 (9%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            ++ C  GL   +  +LTP NI  +DD+  +  + +   +    LL  + K+I+  Y   
Sbjct: 249 FIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTNVETNVLLLDIPKSIIAKYSHK 308

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            +         LF  +  +  N      Y++++    G+  + T H  RH+FAT  LS G
Sbjct: 309 TYR-----DGKLFPILTNQKTNA-----YLKEIADLCGVKKNLTFHLARHTFATMSLSKG 358

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSK 304
             + S+  +LGH  + TTQIY  + +K
Sbjct: 359 VPMESVSKMLGHTNIKTTQIYARITNK 385


>gi|324323824|gb|ADY24868.1| integrase family protein [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 390

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 10/153 (6%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           N  IL  L   G RI E  +   +++  D +  L++ GKG K+R + +   + + I E  
Sbjct: 218 NYTILLALASTGARIQELCTTRVKDLHYDGKHWLKVIGKGSKVRELFISEHLYECICEMR 277

Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266
               F   L+   + PLF   RG   N       +  + +   L          TAHT R
Sbjct: 278 RRRGFQTVLDRGDESPLFVNQRGNFYNSKTLSNQVTDMIKKTNLEFLQYRENPVTAHTFR 337

Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
           H+FA   +  G  DL  +   LGH  + TT+IY
Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370


>gi|92117406|ref|YP_577135.1| phage integrase [Nitrobacter hamburgensis X14]
 gi|91800300|gb|ABE62675.1| phage integrase [Nitrobacter hamburgensis X14]
          Length = 313

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/285 (21%), Positives = 114/285 (40%), Gaps = 10/285 (3%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N+ P         +   WL +L +  G S+ T+  YE D R   +  A  T +   +  +
Sbjct: 19  NDSPWPTPLPFDPDSMFWLDSL-LRGGASRSTIGCYERDIRH--VSAALGTNDAAALTRL 75

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
            Q     I  F +        + ++ R  S ++SF ++L   +    S +L+ R      
Sbjct: 76  NQSVLECITKFWT---ANGAAESTIFRRFSSLRSFARFLMLERSYDCSTLLSSRFPPSGR 132

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           +   A++ +   T++ +      H   W   R+ A++ L    GL  +E  +L  ++   
Sbjct: 133 NRREAISGEAIETILSSSTCDWDH--SWTRLRDCAVVQLAASSGLTTAELTALNRRHYDA 190

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
             + +R+ G     R+  +     + +  Y D  PFDL+     PLF   R   L+    
Sbjct: 191 RLAKVRVCGSHLHSRLGIVSREAARWLTRYLDEVPFDLSPGG--PLFVTTRRTRLSARSL 248

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           Q   R+LR+  G+       +LR++ A   + +G     +   LG
Sbjct: 249 QASFRRLRQTAGVSRHAVPSSLRNAVAEKFVRSGATPEVLAKALG 293


>gi|58616296|ref|YP_195425.1| putative site-specific recombinase [Azoarcus sp. EbN1]
 gi|56315757|emb|CAI10401.1| putative site-specific recombinase [Aromatoleum aromaticum EbN1]
          Length = 224

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 96/211 (45%), Gaps = 42/211 (19%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT------PQNIMDDQSTLRIQ-GKG 194
           LL  +  T     R+  IL+L + CGLR++E   LT      P   +  + +LR +  KG
Sbjct: 16  LLRVTETTSRHPERDVLILWLGFSCGLRVTETARLTVADVLLPSGRLKAEISLRAEITKG 75

Query: 195 DKIRIVPLL-PSVRKAILEYYDL-------CPFD------LNLNIQLPL-FRG------- 232
            + R+  L  P +  A+  Y +        C F+      LN   +L L ++G       
Sbjct: 76  CRQRLACLAHPKLVAALERYIEWRKAKRFACTFNDRQYRGLNPASRLILTWKGGPYALDL 135

Query: 233 -----IRGKPLN---PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
                  G+P+        Q YI+ L R  GL L+++ H+ R +FA+ LL+ G  L ++Q
Sbjct: 136 KRTTNTAGEPVEYWAADSLQAYIKGLYRAAGLHLASS-HSGRRTFASRLLAVGESLETVQ 194

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           ++LGH  L     Y  VN     D + E+++
Sbjct: 195 ALLGHADLDHVMPYLEVNE----DTLREMFE 221


>gi|327536637|gb|AEA95469.1| site-specific recombinase [Salmonella enterica subsp. enterica
           serovar Dublin]
          Length = 256

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 96/226 (42%), Gaps = 52/226 (23%)

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL------------LYGCGL 168
           +  SLP A++   AL L    ++H       +    SA+L+             L+  G 
Sbjct: 10  QPASLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPDLHRKMLLATLWNTGA 69

Query: 169 RISEALSLT-------PQNIMDDQSTL------------RIQGKGDKIRIVPLLPSVRKA 209
           RI+EAL+LT       P       +TL            R+       R+VPL  S   +
Sbjct: 70  RINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRMPAGQQTHRLVPLSDSWYVS 129

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG------------ 255
            L+        +   +++P+ R  R  G+     +++   R +R ++G            
Sbjct: 130 QLQ-------TMVATLKIPMERRNRRTGRTEKARIWEVTDRTVRTWIGEAVAAAAADGVT 182

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 183 FSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 228


>gi|300697577|ref|YP_003748238.1| integrase/recombinase protein [Ralstonia solanacearum CFBP2957]
 gi|299074301|emb|CBJ53848.1| putative integrase/recombinase protein [Ralstonia solanacearum
           CFBP2957]
          Length = 568

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 117/303 (38%), Gaps = 42/303 (13%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           IERG  LS LT +    D   +  FL   T  +  +   R  +  + R F     T  + 
Sbjct: 258 IERGRPLSSLTTE----DAIAYRGFLRHPTPHERWVGPARPRASADWRPF-----TDGLS 308

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            RS+  SLS + +  ++L +++    +    ++   +      AL+   A T  +  L+ 
Sbjct: 309 ARSIAYSLSVLGAMFRWLVQQRYVLANPFAGIK--VRGGGRTAALDASHAFTEGEWALVR 366

Query: 145 T-SHETKW-------IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGK 193
           T +   +W          R   +L   Y  GLR SE +      +  D+     L + GK
Sbjct: 367 TIADGLEWSYGWEAPAAQRLRFVLDFAYATGLRASELIGARLSGVETDRQGDHWLSLVGK 426

Query: 194 GDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           G +   V L P  R A+  Y     L       N Q PL   +   P       R    +
Sbjct: 427 GGRAGKVALPPLARTALDRYLVERGLPVTRARWNPQTPLIGALGLDPDGGITGSRLWSVV 486

Query: 251 RRYLGLPLS---------------TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           RR+     +                + H +RH+ A+H L+ G +L +++  L H  +STT
Sbjct: 487 RRFFWAAANIIEGDHTVLAEKLRKASPHWMRHTHASHALARGAELTTVRDNLRHASISTT 546

Query: 296 QIY 298
            IY
Sbjct: 547 SIY 549


>gi|260855535|ref|YP_003229426.1| putative integrase [Escherichia coli O26:H11 str. 11368]
 gi|312966869|ref|ZP_07781087.1| integrase [Escherichia coli 2362-75]
 gi|257754184|dbj|BAI25686.1| putative integrase [Escherichia coli O26:H11 str. 11368]
 gi|312288333|gb|EFR16235.1| integrase [Escherichia coli 2362-75]
          Length = 311

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 19/140 (13%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           +L   G R  E  +L  + ++  + T   + K  K R VP+  S+ + I +      F  
Sbjct: 175 ILLSTGARWGEVAALEQRRVLHCRITFS-KTKNSKNRTVPISESLFEKIKKRGGKLVFP- 232

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
              +  PL R +  K + P V              P     H LRH+FA+H + NGG++ 
Sbjct: 233 --TLDYPLVRDVI-KTVAPDV--------------PDGQAVHALRHTFASHFMMNGGNIL 275

Query: 282 SIQSILGHFRLSTTQIYTNV 301
           ++Q ILGH ++ TT IY ++
Sbjct: 276 TLQKILGHAKIQTTMIYAHL 295


>gi|260435817|ref|ZP_05789787.1| site-specific recombinase, phage integrase family [Synechococcus
           sp. WH 8109]
 gi|260413691|gb|EEX06987.1| site-specific recombinase, phage integrase family [Synechococcus
           sp. WH 8109]
          Length = 318

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 129/292 (44%), Gaps = 28/292 (9%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK--- 82
           +  R  S  T++ Y+ + R+F      + +       +R+++    + ++S+ R Q    
Sbjct: 36  QCSRSGSSETVRGYKREIREF----TRWRDRNHPHLHLREINAAFCQDWVSQLREQVDAG 91

Query: 83  -IGDRSLKRSLSGIKSFLKYLKKRKITTESNI----LNMRNLKKSNSLPRALNEKQALTL 137
            +  R+  R ++ I S  ++  +   +  + +    +  R+L ++    R ++E+   TL
Sbjct: 92  LMKPRTFNRRIAAISSLYRWASEASRSPVTGVPRNPVPTRSLLQAPKTTRGISEEAVATL 151

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGD 195
           +   ++  +  T     R+ A++   Y  G R+SE   +  ++I  +DD   + + GKG 
Sbjct: 152 L--AVIRQAFSTDRNSRRDYALIKGSYLLGCRVSEIAVIRWKDIEALDDGGQIHLFGKGS 209

Query: 196 KIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRY 253
           K R V     V  A L+ + +L   D    +    F   RG+  L         R+  R 
Sbjct: 210 KRRTV----RVSAATLDLFQELGRGDAEAFV----FPSPRGEGHLTRQAIGDVCRKWGRA 261

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            G  +    H LRHS ATH +  G D+ ++Q+ LGH   +TT  Y   N ++
Sbjct: 262 AGFHVHP--HQLRHSHATHAVQRGVDVFTLQATLGHSSSATTGHYVASNPRD 311


>gi|228474636|ref|ZP_04059367.1| integrase [Staphylococcus hominis SK119]
 gi|228271299|gb|EEK12667.1| integrase [Staphylococcus hominis SK119]
          Length = 404

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 23/167 (13%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQG----------KGDK--------IRIVPLLPS--- 205
           GLRI E L+L P+NI      + I G          +G K         R + +      
Sbjct: 231 GLRIGELLALQPENIDFKNKKIEIDGTIAWITKDGVRGFKDTTKTEASYRTISITTRSCE 290

Query: 206 -VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            +RK +LE      +D N   +  +F   +G P+        I+   + +G+    + HT
Sbjct: 291 ILRKVMLENKKSTKWDSNFKERNFIFTNSKGSPMPLSSINANIKNAAKNVGIEKDISTHT 350

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           +RHS  + L   G  LR+I   +GH    TT QIY++V  +   D M
Sbjct: 351 MRHSHISLLSQLGVSLRAIMDRVGHKDYKTTLQIYSHVTEQMDKDMM 397


>gi|304382579|ref|ZP_07365073.1| integrase [Prevotella marshii DSM 16973]
 gi|304336204|gb|EFM02446.1| integrase [Prevotella marshii DSM 16973]
          Length = 417

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 115/262 (43%), Gaps = 31/262 (11%)

Query: 53  YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
           Y  E I IQ +  +   ++  + +K +  K+   +    LS + S LK L KR+I     
Sbjct: 153 YRVEDILIQKVDAVLVKDLEDYFAKEKGFKLNTSA--GYLSILASLLKDLHKRRIIDTYP 210

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRI 170
            +N  +++     PR +  ++    V  +      E +  +  +  +   L+ C  GL  
Sbjct: 211 FIN-HSIRWEVGTPRYITREE----VRRIAALGEDELQGYEKVSRDMF--LFSCLTGLAY 263

Query: 171 SEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           ++   LT Q+I  +     I+    K   +  +PLLP    AI+E Y          I  
Sbjct: 264 TDVYHLTEQHIFHEAGMTWIRKPRVKTGNVCHIPLLPEA-AAIIERYR--------GIHT 314

Query: 228 PLFRGIRGK----PLNPGV--FQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDL 280
             FR    K    P+ PG      +++++ R  G+  + T H  RH+FA+ + LS G  +
Sbjct: 315 RAFRHEPPKGYLLPI-PGCDTVNIHLKKIARLCGIQKTLTYHMARHTFASQMTLSEGVSI 373

Query: 281 RSIQSILGHFRLSTTQIYTNVN 302
            S+  +LGH ++ TTQ+Y   +
Sbjct: 374 ESVSKMLGHSQIKTTQVYAETS 395


>gi|172058626|ref|YP_001815086.1| integrase family protein [Exiguobacterium sibiricum 255-15]
 gi|171991147|gb|ACB62069.1| integrase family protein [Exiguobacterium sibiricum 255-15]
          Length = 287

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 121/285 (42%), Gaps = 39/285 (13%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +  L  +E     S LT ++Y  D R F         E I I ++ +        +I+  
Sbjct: 7   ERLLAIIEQSPSYSPLTRKAYRVDARHFCTH-----AETIDIPSMHR--------YITLL 53

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR---ALNEKQAL 135
           + Q     ++ R +  + +    L   K +  SN L+ R  K +  LP+   A +  +A 
Sbjct: 54  K-QTYAPTTVSRRIHALATLFDALVAEK-SIPSNPLS-RIKKPTRPLPKHRTAFSYTEAR 110

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKG 194
           ++++ +      ET +         +LL   GLR +EA  L   +I + ++      GKG
Sbjct: 111 SVIETL----QDETMY------TFYFLLLHTGLRFNEARQLCRTDIDLTERQLFVRHGKG 160

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K R VPL   +   ++ Y DL P         PLF+   G  L+P   +R +R     L
Sbjct: 161 QKTRYVPLHDELVTVLIRYLDLQP-------NGPLFQNTAGGLLDPNQTRRQLRLASEQL 213

Query: 255 GLPLSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLSTTQIY 298
            L  +   H LR +FAT +   +  DL ++  +LGH    TTQ Y
Sbjct: 214 -LKRTLRPHDLRVTFATTIYREHRADLLTVMRLLGHSDAKTTQQY 257


>gi|163733376|ref|ZP_02140819.1| phage integrase family protein [Roseobacter litoralis Och 149]
 gi|161393164|gb|EDQ17490.1| phage integrase family protein [Roseobacter litoralis Och 149]
          Length = 412

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 125/299 (41%), Gaps = 16/299 (5%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           S ++ K  + WL+    ERGL+  ++++   + R F  +    T +        +LS  +
Sbjct: 111 SRDVCKVYERWLRT---ERGLATPSIKALMWEARHFCKWFIARTGKA----DFAELSVPD 163

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRA 128
           I A++  R    +  +SLK     ++ FL++L + K+  +  S+ +    L     +P  
Sbjct: 164 IDAYLDSR-APGLTRKSLKDVAERLRGFLRHLHRSKLHGQDLSSHVIAPLLYAYEGIPSI 222

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L  +Q    + NVL     +   +  R+ AIL LL   GLR  E   L   +I     TL
Sbjct: 223 LTPEQ----IANVLKVAGQDVSPLGLRDHAILQLLAKYGLRSGEVGRLQIDDIDWRADTL 278

Query: 189 RIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           R+Q  K +   ++PL+ +V  AIL Y        ++       R         G++    
Sbjct: 279 RVQRSKSNTRAVLPLMETVGDAILRYLREGRPRTDVRTVFLRSRAPYQAMTAGGLYGVVK 338

Query: 248 RQLRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           R+L      P+     H  RH+ A  +L      + I  +LGH     T  Y  + +++
Sbjct: 339 RRLAAAGIEPVGKRGPHIFRHARAVSMLRASTPRKIIGDVLGHRSSEATTPYLKLATED 397


>gi|42519103|ref|NP_965033.1| site-specific tyrosine recombinase XerS [Lactobacillus johnsonii
           NCC 533]
 gi|41583390|gb|AAS08999.1| hypothetical protein LJ_1177 [Lactobacillus johnsonii NCC 533]
 gi|329667361|gb|AEB93309.1| site-specific tyrosine recombinase XerS [Lactobacillus johnsonii
           DPC 6026]
          Length = 356

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 149/349 (42%), Gaps = 54/349 (15%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYT 54
           ME N   E++  EL     ++++   +    S  T   Y  + R+F  +L      +  +
Sbjct: 1   METNKYLELIKQEL-ANMPDFVKEYNLGTSHSLTTTYQYLTEIRRFFDWLRQNNIASVSS 59

Query: 55  EEKITIQTIRQLSYTEIRAFISK-RRTQKIGDR-----SLKRSLSGIKSFLKYLKKRKIT 108
            ++I + T+  L   ++  +I   + T+    R     ++ RS++ ++S  K+L    IT
Sbjct: 60  NKEIEVTTLENLQRNDVMLYIHHLKHTKNQQGRLNSPTTINRSINALRSLYKFLT---IT 116

Query: 109 TESN----ILNMRNLKKSNSL--PRALNEK---------------QALTLVDNVLLHTSH 147
           +++N      +   + K NSL   + LN +               Q L  ++N  +H  +
Sbjct: 117 SDNNHGEPYFDRNVMLKINSLNDTKTLNYRAHVLESHMYMGDLKYQFLDFIENEYIHKCN 176

Query: 148 ET-----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG---DKIRI 199
           +      K    R+ AI+ L+ G G+R+SE + +  +NI    + L +  KG   D + I
Sbjct: 177 KQSLPAFKKNHERDMAIIALILGTGIRVSECVGVNMRNINLKDAMLDVTRKGGQKDSVPI 236

Query: 200 ----VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
               +P L   R+   ++Y     D+     L  + G + K +     ++ + +     G
Sbjct: 237 AEWTIPYLKKYREIRADHYHAEKEDIAF--FLTRWHG-KTKRITTNAVEKMVNKYSAAFG 293

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            PL  T H LRH+ A+ L     D   +   LG    + T +YT+V+ K
Sbjct: 294 KPL--TPHKLRHTLASELYEVTKDQVLVAQQLGQKGTTATDLYTHVDQK 340


>gi|257466156|ref|ZP_05630467.1| putative integrase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917313|ref|ZP_07913553.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691188|gb|EFS28023.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 329

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 116/252 (46%), Gaps = 27/252 (10%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDR----SLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           + I+ +   ++R+++++ +++K   R    +++R LS   SF  +L+      +S +  +
Sbjct: 88  KEIKYIVTDDLRSYLTEYQSEKQSSRVTIDNIRRILS---SFFSWLEDEDYILKSPVRRI 144

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             +K  +S+    ++++   + D     + HE      R+ A++ +L   G+R+ E + L
Sbjct: 145 HKVKTISSIKDTYSDEELERMRD-----SCHEI-----RDLALIDILASTGMRVGELVLL 194

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
             Q+I   +    + GKGDK R+V      +  +  Y      +  ++    LF  +R K
Sbjct: 195 NRQDIKFGERECIVFGKGDKERVVYFDARTKIHLQNY-----LNTRVDSNPALFVALR-K 248

Query: 237 PLNP---GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           P N    G  +  +R++ + L +      H  R + AT  +  G  +  +Q +LGH R+ 
Sbjct: 249 PYNRLTIGGIEVRLRKIGKELEIN-KVHPHKFRRTLATIAIDKGMPIEQLQKLLGHRRID 307

Query: 294 TTQIYTNVNSKN 305
           TT  Y  V   N
Sbjct: 308 TTLQYAMVKQSN 319


>gi|86605557|ref|YP_474320.1| phage integrase family site specific recombinase [Synechococcus sp.
           JA-3-3Ab]
 gi|86554099|gb|ABC99057.1| site-specific recombinase, phage integrase family [Synechococcus
           sp. JA-3-3Ab]
          Length = 309

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 71/160 (44%), Gaps = 23/160 (14%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAIL 211
           R +A++ LL  CGLR  E L LT Q+  I  + S L ++ GKG K R V +   + + + 
Sbjct: 139 RYAALIRLLLECGLRAQELLDLTVQDFQISPEGSLLEVRCGKGSKPRAVAVGDPLSELLQ 198

Query: 212 EYYD-----LCPFDLNLNIQLPLF------RGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +Y         P D       PLF         RG+PL     +  + +L      P   
Sbjct: 199 QYLSRERGPCAPTD-------PLFVSQSRCPAYRGRPLTYDGLRHIVLKLTE--PEPGHQ 249

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           T H  RHSFAT LL  G     IQ +LGH   + T  YT 
Sbjct: 250 TPHQFRHSFATLLLDRGVAPEHIQHLLGHTTAAMTMRYTQ 289


>gi|229015108|ref|ZP_04172164.1| integrase/recombinase [Bacillus mycoides DSM 2048]
 gi|228746161|gb|EEL96108.1| integrase/recombinase [Bacillus mycoides DSM 2048]
          Length = 308

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 94/210 (44%), Gaps = 9/210 (4%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L  ++SF  +L K K+  ++ + N++ L+        L+ ++   L+  +      +  +
Sbjct: 88  LRALRSFYNFLDKHKLIDKNPMKNIKLLRDRQKTIETLDNQEIEKLIKTI----RKQKTF 143

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           +  R+  IL +    G+R+SE + +  +++  ++  L I+   +       L    +  L
Sbjct: 144 VGFRDEVILLVFLDTGVRLSELIGINVEDVRHNK--LIIRSTKNLFERTVYLSDTTQERL 201

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           E Y     ++  N    LF     K L+P   Q  + +  +   +    + HT RH+ A 
Sbjct: 202 ESYIKVRGEVATN---KLFISQNNKELHPHSIQTRLTKYGKEAKISKRVSPHTFRHTMAK 258

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            ++ +G D  S+  +LGH  ++ T+ Y N+
Sbjct: 259 RMIVSGLDAFSLMHLLGHTDITVTKRYVNL 288


>gi|189405329|ref|ZP_02814784.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC869]
 gi|261258240|ref|ZP_05950773.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           FRIK966]
 gi|189370712|gb|EDU89128.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC869]
          Length = 333

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 21/134 (15%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G R SEA  L    ++  + T  ++ KG K R VP+ P                  L   
Sbjct: 202 GARWSEAEGLKQSQVLPGRITF-VKTKGKKNRTVPISP-----------------QLQAM 243

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           LP  RG    P     F   I+  R  + LP     H LRH+FA+H +  GG++  +Q I
Sbjct: 244 LPKKRGALFSPCYE-AFDAAIK--RAKIELPDGQLTHVLRHTFASHFMMRGGNILVLQKI 300

Query: 287 LGHFRLSTTQIYTN 300
           LGH  +  T  Y +
Sbjct: 301 LGHSDIKMTMRYAH 314


>gi|168789851|ref|ZP_02814858.1| integrase [Escherichia coli O157:H7 str. EC869]
 gi|261227840|ref|ZP_05942121.1| phage integrase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258426|ref|ZP_05950959.1| putative integrase [Escherichia coli O157:H7 str. FRIK966]
 gi|189370614|gb|EDU89030.1| integrase [Escherichia coli O157:H7 str. EC869]
 gi|323163435|gb|EFZ49261.1| integrase [Escherichia coli E128010]
          Length = 312

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 19/140 (13%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           +L   G R  E  +L  + ++  + T   + K  K R VP+  S+ + I +      F  
Sbjct: 175 ILLSTGARWGEVAALEQRRVLHCRITFS-KTKNSKNRTVPISESLFEKIKKRGGKLVFP- 232

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
              +  PL R +  K + P V              P     H LRH+FA+H + NGG++ 
Sbjct: 233 --TLDYPLVRDVI-KTVAPDV--------------PDGQAVHALRHTFASHFMMNGGNIL 275

Query: 282 SIQSILGHFRLSTTQIYTNV 301
           ++Q ILGH ++ TT IY ++
Sbjct: 276 TLQKILGHAKIQTTMIYAHL 295


>gi|209516757|ref|ZP_03265609.1| integrase family protein [Burkholderia sp. H160]
 gi|209502874|gb|EEA02878.1| integrase family protein [Burkholderia sp. H160]
          Length = 315

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 93/221 (42%), Gaps = 16/221 (7%)

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            ++ F +Y+  R     S +      +    +P   +  +   L+   + +  + ++   
Sbjct: 69  ALRGFYRYVISRGYVQSSPLPKAIPKRPPPFVPYIYSRDELKALLCACMTYQKNRSRIDP 128

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILE 212
                +L LLYG GLR+ EA+ LT  ++    S L + Q K  K R+VP    +  A+  
Sbjct: 129 QMMQTLLVLLYGTGLRVREAIRLTCADVDISSSCLIVRQTKFRKTRLVPFGAEICGALKR 188

Query: 213 YYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA------HTL 265
           + D      L    Q   F    G+PL     +    ++R+  G+  +  A      H L
Sbjct: 189 HADRRERGALPEQAQTLFFVSRDGRPLCQSTIEDVFGRIRKEAGVRRTDGARYQPRLHDL 248

Query: 266 RHSFATHLL----SNGGDLRS----IQSILGHFRLSTTQIY 298
           RH+FA H L      G D+++    + + LGH  L+ T +Y
Sbjct: 249 RHTFAVHRLIAWYREGADVQTWLPVLSTYLGHTYLAATSVY 289


>gi|148589|gb|AAA24900.1| Protein D [Plasmid F]
          Length = 256

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 96/226 (42%), Gaps = 52/226 (23%)

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL------------LYGCGL 168
           +  SLP A++   AL L    ++H       +    SA+L+             L+  G 
Sbjct: 10  QPASLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPDLHRKMLLATLWNTGA 69

Query: 169 RISEALSLT-------PQNIMDDQSTL------------RIQGKGDKIRIVPLLPSVRKA 209
           RI+EAL+LT       P       +TL            R+       R+VPL  S   +
Sbjct: 70  RINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRMPAGQQTHRLVPLSDSWYVS 129

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG------------ 255
            L+        +   +++P+ R  R  G+     +++   R +R ++G            
Sbjct: 130 QLQ-------TMVAQLKIPMERRNRRTGRTEKARIWEVTDRTVRTWIGEAVAAAAADGVT 182

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 183 FSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 228


>gi|271499297|ref|YP_003332322.1| integrase family protein [Dickeya dadantii Ech586]
 gi|270342852|gb|ACZ75617.1| integrase family protein [Dickeya dadantii Ech586]
          Length = 363

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 61/136 (44%), Gaps = 25/136 (18%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G R SEA  L+ Q +   + T   + KG K R VP+         E YD  P        
Sbjct: 207 GARWSEAEGLSGQQVTPYRITY-TRTKGKKNRTVPI-------SRELYDEIPRK------ 252

Query: 227 LPLFRGIRGKPLNPG--VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
                   GK  +P    F+R I   R  + LP     H LRH+FA+H + NGG++  ++
Sbjct: 253 -------SGKLFSPCRKAFERAIN--RTGIQLPDGQCTHVLRHTFASHFMMNGGNILVLR 303

Query: 285 SILGHFRLSTTQIYTN 300
            ILGH  +  T IY +
Sbjct: 304 DILGHADIKMTMIYAH 319


>gi|115360449|ref|YP_777586.1| phage integrase family protein [Burkholderia ambifaria AMMD]
 gi|115285777|gb|ABI91252.1| phage integrase family protein [Burkholderia ambifaria AMMD]
          Length = 578

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 129/319 (40%), Gaps = 65/319 (20%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +ERG  LS LT +    D   +  F+   T  +  +  +R     + R F     +  + 
Sbjct: 258 VERGRALSSLTTE----DAVAYRAFIRRPTPHERWVGPVRPRGAPDWRPF-----SGGLS 308

Query: 85  DRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSL--PRALNEKQAL---TL 137
            RS   +LS + +  ++L +++  +      + +R+ + +N+L    A  E + L   T+
Sbjct: 309 ARSAAYTLSVLGALFRWLIEQRYLLANPFAGVKVRDTRGANALDTSHAFTEGEWLLVRTI 368

Query: 138 VDNVLLHTSHETK-----WIDARNSAILYLL---YGCGLRISEALSLTPQNIMDD---QS 186
            D +       +      W  A    + ++L   Y  GLR SE +  T  +I  D    +
Sbjct: 369 ADGLEFRKDRPSGAPGSGWTPAAAQRLRFILDFGYATGLRASELVGATLGDIDTDAHGDA 428

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP------ 240
            L++ GKG K   V L P  R A+  Y         +  +LP+   +R +P  P      
Sbjct: 429 WLKVIGKGSKAARVALPPLARTALDRYL--------VARRLPVT-PVRWRPDTPLIPSLA 479

Query: 241 -------------GVFQRYIRQLRRYLGL--PL------STTAHTLRHSFATHLLSNGGD 279
                         V QR+  Q    +    P         + H +RH+ ATH L+ G +
Sbjct: 480 EDGAAAITSMRLWKVMQRFFAQTAALVDADNPALAQKLRQASPHWMRHTHATHALARGAE 539

Query: 280 LRSIQSILGHFRLSTTQIY 298
           L +++  L H  +STT IY
Sbjct: 540 LTTVRDNLRHASISTTSIY 558


>gi|132266|sp|P06615|REDF_ECOLI RecName: Full=Resolvase; AltName: Full=Protein D
 gi|41210|emb|CAA28640.1| unnamed protein product [Escherichia coli]
          Length = 268

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 96/226 (42%), Gaps = 52/226 (23%)

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL------------LYGCGL 168
           +  SLP A++   AL L    ++H       +    SA+L+             L+  G 
Sbjct: 22  QPASLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPDLHRKMLLATLWNTGA 81

Query: 169 RISEALSLT-------PQNIMDDQSTL------------RIQGKGDKIRIVPLLPSVRKA 209
           RI+EAL+LT       P       +TL            R+       R+VPL  S   +
Sbjct: 82  RINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRMPAGQQTHRLVPLSDSWYVS 141

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG------------ 255
            L+        +   +++P+ R  R  G+     +++   R +R ++G            
Sbjct: 142 QLQ-------TMVAQLKIPMERRNRRTGRTEKARIWEVTDRTVRTWIGEAVAAAAADGVT 194

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 195 FSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240


>gi|15802318|ref|NP_288344.1| integrase for prophage CP-933T [Escherichia coli O157:H7 EDL933]
 gi|15831871|ref|NP_310644.1| integrase [Escherichia coli O157:H7 str. Sakai]
 gi|187776266|ref|ZP_02801548.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4196]
 gi|188024649|ref|ZP_02772961.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4113]
 gi|189404109|ref|ZP_02787302.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4501]
 gi|189406250|ref|ZP_02827228.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC508]
 gi|194430421|ref|ZP_03062905.1| integrase for prophage CP-933T [Escherichia coli B171]
 gi|208810345|ref|ZP_03252221.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816796|ref|ZP_03257916.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819521|ref|ZP_03259841.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4042]
 gi|209395701|ref|YP_002270994.1| integrase family protein [Escherichia coli O157:H7 str. EC4115]
 gi|217328885|ref|ZP_03444966.1| integrase family protein [Escherichia coli O157:H7 str. TW14588]
 gi|254793532|ref|YP_003078369.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           TW14359]
 gi|331683415|ref|ZP_08384016.1| integrase [Escherichia coli H299]
 gi|12515975|gb|AAG56898.1|AE005412_8 integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EDL933]
 gi|13362085|dbj|BAB36040.1| putative integrase [Escherichia coli O157:H7 str. Sakai]
 gi|187768066|gb|EDU31910.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017419|gb|EDU55541.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4113]
 gi|189367364|gb|EDU85780.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4501]
 gi|189375751|gb|EDU94167.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC508]
 gi|194411527|gb|EDX27865.1| integrase for prophage CP-933T [Escherichia coli B171]
 gi|195182940|dbj|BAG66506.1| putative integrase [Escherichia coli O111:H-]
 gi|208724861|gb|EDZ74568.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731139|gb|EDZ79828.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739644|gb|EDZ87326.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157101|gb|ACI34534.1| integrase family protein [Escherichia coli O157:H7 str. EC4115]
 gi|217318232|gb|EEC26659.1| integrase family protein [Escherichia coli O157:H7 str. TW14588]
 gi|254592932|gb|ACT72293.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           TW14359]
 gi|309702157|emb|CBJ01472.1| phage integrase [Escherichia coli ETEC H10407]
 gi|323180706|gb|EFZ66251.1| integrase [Escherichia coli 1180]
 gi|326342290|gb|EGD66071.1| Integrase [Escherichia coli O157:H7 str. 1044]
 gi|326343839|gb|EGD67601.1| Integrase [Escherichia coli O157:H7 str. 1125]
 gi|331079630|gb|EGI50827.1| integrase [Escherichia coli H299]
          Length = 333

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 21/134 (15%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G R SEA  L    ++  + T  ++ KG K R VP+ P                  L   
Sbjct: 202 GARWSEAEGLKQSQVLPGRITF-VKTKGKKNRTVPISP-----------------QLQAM 243

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           LP  RG    P     F   I+  R  + LP     H LRH+FA+H +  GG++  +Q I
Sbjct: 244 LPKKRGALFSPCYE-AFDAAIK--RAKIELPDGQLTHVLRHTFASHFMMRGGNILVLQKI 300

Query: 287 LGHFRLSTTQIYTN 300
           LGH  +  T  Y +
Sbjct: 301 LGHSDIKMTMRYAH 314


>gi|311741847|ref|ZP_07715658.1| phage-related integrase [Aeromicrobium marinum DSM 15272]
 gi|311314853|gb|EFQ84759.1| phage-related integrase [Aeromicrobium marinum DSM 15272]
          Length = 425

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 75/358 (20%), Positives = 140/358 (39%), Gaps = 100/358 (27%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + WL  LE +R L+  T  SY    R++++         I  + +  L+  ++RA     
Sbjct: 94  EQWL--LEQQRRLASHTWGSYAGTVRKWIV-------PTIGHKRLANLTPGDLRAVT--- 141

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R ++   +    +L+  +  +K L+  +I        + ++K     P   +++ A+ L 
Sbjct: 142 RAEEQAGKKPASTLATRRILVKMLRDARIEGHPIPARIFDVKAHTPPP---SDRDAIPLA 198

Query: 139 D-----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           D     N  L   H ++WI         + +  G+R  E L LT  ++  D+  + I+ +
Sbjct: 199 DAIAIMNASLTLPHTSRWI---------VAFFEGMRQGEVLGLTWDHVDLDRGIIDIEYQ 249

Query: 194 GDKI------------------------------------RIVPLLPSVRKAILEYYDLC 217
            D +                                    RI+P++     A+ ++ +L 
Sbjct: 250 LDSLAYLDREAGTFRHPDRITPKQLWRSYHLVPPKSKSGRRIIPIVGPALAALQQWRELA 309

Query: 218 PFDLNLNIQLPLFRGI-----RGKPLNPG--------------VFQRYIRQLRRYLGLPL 258
           P         P   G+      G+P+NP               V      Q RRY G   
Sbjct: 310 P---------PSPHGLVWPRPDGRPINPQHDTAEWIDLQDRAQVASVDGNQGRRYAG--- 357

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               H +RH+ AT LL  G D R++++ILGH  + T++ Y +V  +   + M ++ D+
Sbjct: 358 ----HEIRHTTATILLEIGADPRTVEAILGHSSIVTSRGYQHVRDELSREAMQKVSDR 411


>gi|253801000|ref|YP_003034001.1| site-specific recombinase [Escherichia coli Vir68]
 gi|253721177|gb|ACT33486.1| site-specific recombinase [Escherichia coli Vir68]
          Length = 268

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 96/226 (42%), Gaps = 52/226 (23%)

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL------------LYGCGL 168
           +  SLP A++   AL L    ++H       +    SA+L+             L+  G 
Sbjct: 22  QPASLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPDLHRKMLLATLWNTGA 81

Query: 169 RISEALSLT-------PQNIMDDQSTL------------RIQGKGDKIRIVPLLPSVRKA 209
           RI+EAL+LT       P       +TL            R+       R+VPL  S   +
Sbjct: 82  RINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRMPAGQQTHRLVPLSDSWYVS 141

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG------------ 255
            L+        +   +++P+ R  R  G+     +++   R +R ++G            
Sbjct: 142 QLQ-------TMVATLKIPMERRNRRTGRTEKARIWEVTDRTVRTWIGEAVAAAAADGVT 194

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 195 FSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240


>gi|304383186|ref|ZP_07365659.1| probable integrase [Prevotella marshii DSM 16973]
 gi|304335657|gb|EFM01914.1| probable integrase [Prevotella marshii DSM 16973]
          Length = 407

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 21/169 (12%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIR 198
           L+   ++ +  + R + IL L   CGLR  +   LT +NI      L+ +    KG    
Sbjct: 240 LIQCHYDNENPNVRRAFILCLY--CGLRFCDVKDLTYKNIDYTNHLLKFEQNKTKGHSAN 297

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL---G 255
              ++P +   +L      P DL+ +I             N   ++   + ++R++   G
Sbjct: 298 SGVVIP-LNDGLLSLIGEAPEDLDTSI------------FNLPTYESCCKSVKRWVKRAG 344

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +    + H  RHSFA ++L+NG +++++ S+LGH  L  T+ YT    K
Sbjct: 345 INKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|225374497|ref|ZP_03751718.1| hypothetical protein ROSEINA2194_00112 [Roseburia inulinivorans DSM
           16841]
 gi|225213735|gb|EEG96089.1| hypothetical protein ROSEINA2194_00112 [Roseburia inulinivorans DSM
           16841]
          Length = 106

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 40/60 (66%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           ++ R+  +  G+    + H LRHSFA+HL  +G D++ IQ++LGH    +T++Y +V++K
Sbjct: 32  QFFRESAKRAGIQKHVSTHCLRHSFASHLFESGCDVKYIQALLGHRDPKSTEVYLHVSNK 91


>gi|229012556|ref|ZP_04169730.1| Transposition regulatory protein TnpA [Bacillus mycoides DSM 2048]
 gi|228748716|gb|EEL98567.1| Transposition regulatory protein TnpA [Bacillus mycoides DSM 2048]
          Length = 373

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 101/224 (45%), Gaps = 43/224 (19%)

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           S  KSFL ++ K K      I N+  LK+       L ++Q    V  V+  T+      
Sbjct: 143 SRYKSFLHHVNKDK----PAIRNVLKLKEPRKKVNTLTKEQ----VQQVIQATT------ 188

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV--------PLLP 204
           + R++ ++ LL+  GLRI EALSL  ++ + D        KG +IR+V         +L 
Sbjct: 189 NIRDTFLIQLLFETGLRIGEALSLFMEDFIFDHQ------KGHRIRLVNRGELENGAMLK 242

Query: 205 S------VRKAILEYYD------LCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLR 251
           +      V +++++ YD      +   + + N      RG   GKP+     +   ++L+
Sbjct: 243 TGEREIFVSQSLMDLYDDYLYEVIDELEFDSNFVFVKLRGKDIGKPMEYWNVEALFKRLK 302

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           +  G+ L    H  RH+ AT       D++ +Q  LGH ++ TT
Sbjct: 303 KKTGINLH--PHLFRHTHATIYYQKTKDIKQVQERLGHSQIQTT 344


>gi|111025561|ref|YP_707981.1| integrase/recombinase [Rhodococcus jostii RHA1]
 gi|110824540|gb|ABG99823.1| probable integrase/recombinase [Rhodococcus jostii RHA1]
          Length = 384

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 91/224 (40%), Gaps = 17/224 (7%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           L+ I+SF +Y    + T   ++ ++     +K   + P +   +QA+      LL     
Sbjct: 167 LACIRSFFEYAATAEPTLAIHLADLAGIPLMKAPATKPVSHMSQQAI----KALLAQPDP 222

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
                 R+   + L+Y    R +E LS    ++   + T+ + GKG K R +P+      
Sbjct: 223 IIRTGLRDQFFMILMYDTAARDAEMLSAAIGDLDAQRLTIDLLGKGSKPRRIPITKETAA 282

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGI---RGKPLNPGVFQRYIRQL-----RRYLGLPLST 260
               Y     F  +  +  PLF  I   R   ++     R IRQ      R+   +P   
Sbjct: 283 HYRRY--TAAFHPDPQLGDPLFYTIHSHRKTRMSDDNAARIIRQHAQAAHRKCAEVPAGA 340

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             H LRHS A HL   G  L  +   LGH    TT IY + ++K
Sbjct: 341 HPHMLRHSRAMHLYQAGMPLALLTEWLGHADPETTLIYAHADTK 384


>gi|9507757|ref|NP_061423.1| site-specific recombinase [Plasmid F]
 gi|58383299|ref|YP_194871.1| resolvase protein D [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|187736744|ref|YP_001816482.1| ResD [Escherichia coli 1520]
 gi|256367711|ref|YP_003108268.1| ResD [Escherichia coli]
 gi|291289364|ref|YP_003517696.1| resolvase [Klebsiella pneumoniae]
 gi|302595370|ref|YP_003829232.1| site-specific resolvase; cleaves at rfsF site [Escherichia coli]
 gi|302595489|ref|YP_003829107.1| site-specific resolvase; cleaves at rfsF site [Escherichia coli]
 gi|309797304|ref|ZP_07691698.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
 gi|8918867|dbj|BAA97914.1| resolvase [Plasmid F]
 gi|37962778|gb|AAR05725.1| resolvase protein D [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|62550777|emb|CAH64700.1| resolvase [uncultured bacterium]
 gi|172051326|emb|CAP07668.1| ResD [Escherichia coli]
 gi|228480648|gb|ACQ41975.1| ResD [Escherichia coli]
 gi|290792325|gb|ADD63650.1| resolvase [Klebsiella pneumoniae]
 gi|302310130|gb|ADL14001.1| ResD [Escherichia coli]
 gi|302310258|gb|ADL14126.1| ResD [Escherichia coli]
 gi|308119051|gb|EFO56313.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
          Length = 268

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 96/226 (42%), Gaps = 52/226 (23%)

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL------------LYGCGL 168
           +  SLP A++   AL L    ++H       +    SA+L+             L+  G 
Sbjct: 22  QPASLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPDLHRKMLLATLWNTGA 81

Query: 169 RISEALSLT-------PQNIMDDQSTL------------RIQGKGDKIRIVPLLPSVRKA 209
           RI+EAL+LT       P       +TL            R+       R+VPL  S   +
Sbjct: 82  RINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRMPAGQQTHRLVPLSDSWYVS 141

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG------------ 255
            L+        +   +++P+ R  R  G+     +++   R +R ++G            
Sbjct: 142 QLQ-------TMVATLKIPMERRNRRTGRTEKARIWEVTDRTVRTWIGEAVAAAAADGVT 194

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 195 FSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240


>gi|303235615|ref|ZP_07322222.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302484062|gb|EFL47050.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 451

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 95/209 (45%), Gaps = 35/209 (16%)

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMD 183
           PR++ +++   ++D        E +W + R    L++ + C  GL IS+  +L  +NI+ 
Sbjct: 267 PRSITKEELEHIIDL-------EIEWENYRIVRDLFV-FSCFTGLAISDVRNLREENIVT 318

Query: 184 DQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-- 238
           ++  L I+G+  K +    V +LP     +  Y                 RGIR   +  
Sbjct: 319 EEGKLCIKGRRMKTKTPYRVQVLPPALTIMNRY-----------------RGIRAGFVFD 361

Query: 239 --NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTT 295
                +    +  ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TT
Sbjct: 362 VPTTDIVLNGMHYIQRNIGMETPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTT 421

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           Q+Y  V+S+     M EI  +   + T K
Sbjct: 422 QVYAAVSSERIHRDMQEIQQRIQDTFTLK 450


>gi|260174266|ref|ZP_05760678.1| tyrosine type site-specific recombinase [Bacteroides sp. D2]
 gi|315922537|ref|ZP_07918777.1| tyrosine type site-specific recombinase [Bacteroides sp. D2]
 gi|313696412|gb|EFS33247.1| tyrosine type site-specific recombinase [Bacteroides sp. D2]
          Length = 406

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 23/173 (13%)

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI 199
           ++L      K ++      ++ ++  GL  S+   L+P++++ D++  L I+    K +I
Sbjct: 232 IILAKEFTIKRVEQVRDVFVFCIFT-GLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKI 290

Query: 200 ---VPLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
              +P+LP V  +ILE Y     C   L     LP+    R           Y++++   
Sbjct: 291 MCNIPVLP-VAASILEKYKNVAECTGKL-----LPVLSNQR--------MNSYLKEIADV 336

Query: 254 LGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            G+  + + HT RHS+AT + L+NG  + ++  +LGH   S T+ Y  V  +N
Sbjct: 337 CGIHKNLSTHTARHSYATSICLANGVSMENVAKMLGHADTSITKHYARVLDQN 389


>gi|260855846|ref|YP_003229737.1| integrase [Escherichia coli O26:H11 str. 11368]
 gi|257754495|dbj|BAI25997.1| integrase [Escherichia coli O26:H11 str. 11368]
 gi|323152673|gb|EFZ38948.1| integrase [Escherichia coli EPECa14]
          Length = 333

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 21/134 (15%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G R SEA  L    ++  + T  ++ KG K R VP+ P                  L   
Sbjct: 202 GARWSEAEGLKQSQVLPGRITF-VKTKGKKNRTVPISP-----------------QLQAM 243

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           LP  RG    P     F   I+  R  + LP     H LRH+FA+H +  GG++  +Q I
Sbjct: 244 LPQKRGALFSPCYE-AFDAAIK--RAKIELPDGQLTHVLRHTFASHFMMRGGNILVLQKI 300

Query: 287 LGHFRLSTTQIYTN 300
           LGH  +  T  Y +
Sbjct: 301 LGHSDIKMTMRYAH 314


>gi|295087392|emb|CBK68915.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 382

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 13/165 (7%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKG-DKIRIVPLLP--SVRKAILEYYDL 216
            ++ C  GL  S+   L  ++I++D + +R   KG  K +I+  +P   +   ILE Y  
Sbjct: 226 FVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQKTKIMCNIPLMEIPLKILEKYST 285

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
             +     +  P+   +  + +N      Y+++L    G+  + T H  RH+FAT  L+N
Sbjct: 286 NEYCKKHGVLFPV---LCNQKMNA-----YLKELADICGIKKTLTTHVGRHTFATFALAN 337

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           G  + S+  +LGH  +  T+ Y  V  +     M +I    H SI
Sbjct: 338 GVSIESVAKMLGHTNVQMTRHYARVLDRTVIREMSQIKMDFHISI 382


>gi|227544527|ref|ZP_03974576.1| site-specific tyrosine recombinase XerS [Lactobacillus reuteri
           CF48-3A]
 gi|300908115|ref|ZP_07125584.1| site-specific tyrosine recombinase XerS [Lactobacillus reuteri
           SD2112]
 gi|227185505|gb|EEI65576.1| site-specific tyrosine recombinase XerS [Lactobacillus reuteri
           CF48-3A]
 gi|300894731|gb|EFK88084.1| site-specific tyrosine recombinase XerS [Lactobacillus reuteri
           SD2112]
          Length = 376

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 6/168 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI+ L+ G G+R+SEA ++   ++   QS L +  KG +   VP+ P     I  Y 
Sbjct: 206 RDIAIIALILGTGVRVSEAANVNLGDLNLKQSLLDVTRKGGQRDSVPIAPWAITYIKAYQ 265

Query: 215 DLCPFDLN-LNIQLPLFRGIRGKP---LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            +     + L      F  +  K    +     ++ +++     G PL  T H LRH+ A
Sbjct: 266 AIRAQRYHALKKDTAFFLTVYHKQTRRMTANAIEKMVKKYSTAFGHPL--TPHKLRHTLA 323

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + +     D   +   LG    S T +YT+V+ K   D + EI + ++
Sbjct: 324 SEMYEVTKDQVLVAQQLGQKGTSATDLYTHVDQKQQRDALKEISETSY 371


>gi|170761057|ref|YP_001787301.1| phage integrase family site specific recombinase [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169408046|gb|ACA56457.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 357

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 67/153 (43%), Gaps = 27/153 (17%)

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKI----------------RIVPLLPSVRKA 209
           CGLRI E L LT  +I +  STL +  +  K+                R+VP+ P+  K 
Sbjct: 201 CGLRIGEVLGLTWADIDEINSTLTVNKQWKKLKSGNWGFGSVKSKNSNRVVPISPNTLK- 259

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
                +L  F  N    +     +    +N     R +R   +  G  +S   H LRH++
Sbjct: 260 -----ELKNFKKNFVTDIHNRIIVCADSIN---LSRGLRDCYKRNGYNISI--HDLRHTY 309

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           AT L+ NG D ++   +LGH    T + Y +VN
Sbjct: 310 ATMLIGNGVDFKTAAKLLGHTIEMTMKTYAHVN 342


>gi|307129611|ref|YP_003881627.1| Phage integrase [Dickeya dadantii 3937]
 gi|306527140|gb|ADM97070.1| Phage integrase [Dickeya dadantii 3937]
          Length = 363

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 61/136 (44%), Gaps = 25/136 (18%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G R SEA  L+ Q +   + T   + KG K R VP+         E YD  P        
Sbjct: 207 GARWSEAEGLSGQQVTPYRITY-TRTKGKKNRTVPI-------SRELYDEIPRK------ 252

Query: 227 LPLFRGIRGKPLNPG--VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
                   GK  +P    F+R I   R  + LP     H LRH+FA+H + NGG++  ++
Sbjct: 253 -------SGKLFSPCRKAFERAIN--RTGIQLPDGQCTHVLRHTFASHFMMNGGNILVLR 303

Query: 285 SILGHFRLSTTQIYTN 300
            ILGH  +  T IY +
Sbjct: 304 DILGHADIKMTMIYAH 319


>gi|270294584|ref|ZP_06200786.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
 gi|270276051|gb|EFA21911.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
          Length = 406

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 23/173 (13%)

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI 199
           ++L      K ++      ++ ++  GL  S+   L+P++++ D++  L I+    K +I
Sbjct: 232 IILAKEFTIKRVEQVRDVFVFCIFT-GLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKI 290

Query: 200 ---VPLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
              +P+LP V  +ILE Y     C   L     LP+    R           Y++++   
Sbjct: 291 MCNIPVLP-VAASILEKYKNVAECTGKL-----LPVLSNQR--------MNSYLKEIADV 336

Query: 254 LGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            GL  +   H+ RHS+AT + L+NG  + ++  +LGH   S T+ Y  V  +N
Sbjct: 337 CGLQKNLCTHSARHSYATSICLANGVSMENVAKMLGHADTSVTKHYARVLDQN 389


>gi|196047914|ref|ZP_03115092.1| related, transposase A [Bacillus cereus 03BB108]
 gi|196021170|gb|EDX59899.1| related, transposase A [Bacillus cereus 03BB108]
          Length = 356

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 103/218 (47%), Gaps = 31/218 (14%)

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           S  KSFL ++ K K     +I N+  LK+     + L ++Q    V  VL  T+      
Sbjct: 143 SRYKSFLHHINKDK----PSIRNVLKLKEPRKKLKILTKEQ----VQQVLNATT------ 188

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKGD-----KIRIVPLLP 204
           + R++ ++ LL+  GLRI E LSL  ++ + D +    +R+  +G+     K++      
Sbjct: 189 NIRDTFLIQLLFETGLRIGEVLSLFIEDFIFDHAKGHRIRLVDRGELENGAKLKTGEREI 248

Query: 205 SVRKAILEYYD------LCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLP 257
            V +++++ YD      +   D++ N      RG   GKP+     +   ++L++  G+ 
Sbjct: 249 FVSQSLMDLYDDYLYEIMDELDVDTNFVFIKLRGENAGKPMTYSDVESLFKRLKKKTGIN 308

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           L    H  RH+ AT       +++ +Q  LGH ++ TT
Sbjct: 309 LH--PHLFRHTHATIYYQKTKNIKQVQERLGHSQIQTT 344


>gi|218262944|ref|ZP_03477242.1| hypothetical protein PRABACTJOHN_02922 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223043|gb|EEC95693.1| hypothetical protein PRABACTJOHN_02922 [Parabacteroides johnsonii
           DSM 18315]
          Length = 392

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 54/166 (32%)

Query: 162 LLYGC--GLRISEALSLTPQN--IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            L+ C  GLR S+ +++ P N  ++DD+  L             +  SV+          
Sbjct: 240 FLFSCYTGLRFSDIVNIRPDNFHLIDDKLWL-------------VYSSVKT--------- 277

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-GLPLSTTA-------------- 262
               ++N++LPLF    GK L   V++RY ++  R L G+ +S  +              
Sbjct: 278 ----DVNVRLPLFLLFDGKAL--AVYERYRKRYSRTLFGVSVSANSNVNKQLKRICRLAE 331

Query: 263 -------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                  H  RH+ AT LL NG ++ ++Q +LGH  + TT+IY+++
Sbjct: 332 IDKRLSFHMARHTNATLLLYNGANITTVQKLLGHKSVRTTEIYSDI 377


>gi|327313820|ref|YP_004329257.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|326944777|gb|AEA20662.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 428

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 17/157 (10%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MD-DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
            L+ C  GL   +  +LTP NI  MD  Q  +  + K D +  + LL  + K I++ Y+ 
Sbjct: 249 FLFSCFTGLAYVDVANLTPDNIITMDGKQWIVTARQKTDTLSHILLL-DIPKIIIKKYEG 307

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
              +  L   +P+    R           Y++++    G+  + T H  RH+FAT +L+ 
Sbjct: 308 KAKNGRL---IPILSNQR--------MNSYLKEIADVCGINKNLTFHMARHTFATMMLTK 356

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           G  + S+  +LGH  ++TTQ+Y  + +K   + M+ +
Sbjct: 357 GVPVESVSKMLGHTSITTTQLYARITNKKIENDMLAV 393


>gi|291528111|emb|CBK93697.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
 gi|291540208|emb|CBL13319.1| Site-specific recombinase XerD [Roseburia intestinalis XB6B4]
          Length = 328

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/240 (21%), Positives = 105/240 (43%), Gaps = 23/240 (9%)

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           T +  +  ++++ K+   +++R  S   SF  +L+      +S +  +  +K ++++   
Sbjct: 99  TYLAEYQKEKQSSKVTIDNIRRIFS---SFFSWLEDEDYIIKSPVRRIHRIKAASTIKET 155

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
             ++Q  ++ DN            + R+ A++ +L   G+R+ E + L   +I  D+   
Sbjct: 156 YTDEQLESMRDNC----------DNPRDLALIDILASTGMRVGELVLLNRDDISFDEREC 205

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP---GVFQR 245
            + GKGDK R+V      +  +  Y      D   +    LF  ++  P N    G  + 
Sbjct: 206 IVFGKGDKERMVYFDARTKIHLQNY-----LDSRTDNNEALFVSLKA-PYNRMKIGGIEL 259

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +R++ + L +      H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V   N
Sbjct: 260 RLREMGKRLNIE-KVHPHKFRRTLATVAIDKGMPIEQLQKLLGHQRIDTTLQYAMVKQSN 318


>gi|281425478|ref|ZP_06256391.1| integrase [Prevotella oris F0302]
 gi|281400471|gb|EFB31302.1| integrase [Prevotella oris F0302]
          Length = 428

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 17/157 (10%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MD-DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
            L+ C  GL   +  +LTP NI  MD  Q  +  + K D +  + LL  + K I++ Y+ 
Sbjct: 249 FLFSCFTGLAYVDVANLTPDNIITMDGKQWIVTARQKTDTLSHILLL-DIPKIIIKKYEG 307

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
              +  L   +P+    R           Y++++    G+  + T H  RH+FAT +L+ 
Sbjct: 308 KAKNGRL---IPILSNQR--------MNSYLKEIADVCGINKNLTFHMARHTFATMMLTK 356

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           G  + S+  +LGH  ++TTQ+Y  + +K   + M+ +
Sbjct: 357 GVPVESVSKMLGHTSITTTQLYARITNKKIENDMLAV 393


>gi|325853917|ref|ZP_08171433.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325484254|gb|EGC87184.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 427

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 85/210 (40%), Gaps = 36/210 (17%)

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTL 188
           E+ ALT  D   L      + +D  N   L  L GC  GL  S+   L     MDD  T 
Sbjct: 219 ERNALTADDLQKLLAYRPHRSVD--NHCRLIFLLGCFTGLAFSDLKKLR----MDDVYTF 272

Query: 189 R--------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG---IRGKP 237
                     + K     IVPLLP   K              L I  P  R     R  P
Sbjct: 273 GDGRRYISLCRTKTQNRSIVPLLPIAEKI-------------LAIVSPGRREGLFFREFP 319

Query: 238 LNPGVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLST 294
            N   F R I+++    GLP  T  T+HT RH+FAT + L NG  + ++  +LGH  +ST
Sbjct: 320 SNSN-FNRTIQEICIKAGLPPHTQATSHTARHTFATTICLENGLPIETVSKMLGHRFIST 378

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           T+IY  V        M  +    H  + +K
Sbjct: 379 TEIYARVTKSKIAKEMQPLMGSEHTRVLRK 408


>gi|222528753|ref|YP_002572635.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222455600|gb|ACM59862.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 325

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 103/229 (44%), Gaps = 39/229 (17%)

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           +N+ ++ +LP+   E+  +  + +  + T  +    D+   A L  LY  GLR  E L L
Sbjct: 101 QNVSEAVALPKV--ERPEIKTLSSEQVTTFLQAAQTDSLYPAFLLELY-TGLRRGELLGL 157

Query: 177 TPQNIMDDQSTLRIQGKGDKI---------------------RIVPLLPSVRKAILEYYD 215
              +I  D  T+ ++    ++                     R++P+   V   + E Y+
Sbjct: 158 KWDDIDFDNCTIHVKRSLVRVYDHNLKKTTLLLQPPKTKAGYRVIPIPDFVVAELKELYE 217

Query: 216 ------LCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
                 L   + N LN+   +F   +G P++P  F+R  +QL +   LP +   H LRH+
Sbjct: 218 EHQRIKLSQPNFNSLNL---MFVTTQGTPIDPRNFERKFKQLLKKANLP-NIRLHDLRHT 273

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN---SKNGGDWMMEI 313
            AT LL      + +Q ILGH  +STT  IY++VN    K     ++EI
Sbjct: 274 VATLLLQQNVHPKIVQEILGHRDISTTLDIYSHVNIELKKKATSCLVEI 322


>gi|172065724|ref|YP_001816436.1| integrase family protein [Burkholderia ambifaria MC40-6]
 gi|171997966|gb|ACB68883.1| integrase family protein [Burkholderia ambifaria MC40-6]
          Length = 580

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 130/319 (40%), Gaps = 65/319 (20%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +ERG  LS LT +    D   +  F+   T  +  +  +R     + R F     +  + 
Sbjct: 260 VERGRALSSLTTE----DAVAYRAFIRRPTPHERWVGPVRPRGAPDWRPF-----SGGLS 310

Query: 85  DRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSL--PRALNEKQAL---TL 137
            RS   +LS + +  ++L +++  +      + +R+ + +N+L    A  E + L   T+
Sbjct: 311 ARSAAYTLSVLGALFRWLIEQRYLLANPFAGVKVRDTRGANALDTSHAFTEGEWLLVRTI 370

Query: 138 VDNVLLHT-----SHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDD---QS 186
            D +         +  + W  A    + ++L   Y  GLR SE +  T  +I  D    +
Sbjct: 371 ADGLEFRKDKPSGAPGSGWTPAAAQRLRFILDFGYATGLRASELVGATLGDIDTDAHGDA 430

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP------ 240
            L++ GKG K   V L P  R A+  Y         +  +LP+   +R +P  P      
Sbjct: 431 WLKVIGKGSKAARVALPPLARTALDRYL--------VARRLPVT-PVRWRPDTPLIPSLA 481

Query: 241 -------------GVFQRYIRQLRRYLGL--PL------STTAHTLRHSFATHLLSNGGD 279
                         V QR+  Q    +    P         + H +RH+ ATH L+ G +
Sbjct: 482 EDGAAAITSVRLWKVMQRFFAQTAALVDADNPALAQKLRQASPHWMRHTHATHALARGAE 541

Query: 280 LRSIQSILGHFRLSTTQIY 298
           L +++  L H  +STT IY
Sbjct: 542 LTTVRDNLRHASISTTSIY 560


>gi|150007390|ref|YP_001302133.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149935814|gb|ABR42511.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 248

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 96/193 (49%), Gaps = 26/193 (13%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLT 177
           KK+ + PRAL+ +++   + +V +  ++    I AR+      L+GC  G+  ++ +S+T
Sbjct: 56  KKTETTPRALS-RESFERIRDVEI-PAYRKSHILARDM----FLFGCYTGVCYADVVSIT 109

Query: 178 PQNIMDDQST---LRIQGKGDKIRI-VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
            +N+  D+     L+ + K +++R  V LLP     I +Y+       + +   PL    
Sbjct: 110 HENLYTDEDGALWLKYRRKKNELRASVKLLPEAIALIEKYHSG-----DRDTLFPL---- 160

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRL 292
               L+    +R+++ L    G+      H  RHSFA+ + L  G  + +I  +LGH  +
Sbjct: 161 ----LHWSNLRRHMKALAALAGIKDDLCYHQARHSFASLITLEAGVPIETISRMLGHSDI 216

Query: 293 STTQIYTNVNSKN 305
           STTQ+Y  V+ K 
Sbjct: 217 STTQVYARVSPKK 229


>gi|323978150|gb|EGB73236.1| phage integrase [Escherichia coli TW10509]
          Length = 317

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 5/78 (6%)

Query: 229 LFRGIR---GKPLNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSI 283
           LF  I+   GK + P +    +R + + +   +P     H LRH+FA+H + NGG++ ++
Sbjct: 218 LFEKIKKRGGKLVFPTLDYSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTL 277

Query: 284 QSILGHFRLSTTQIYTNV 301
           Q ILGH ++ TT IY ++
Sbjct: 278 QKILGHAKIQTTMIYAHL 295


>gi|296840910|ref|ZP_06899429.1| tyrosine recombinase XerD [Neisseria polysaccharea ATCC 43768]
 gi|296839547|gb|EFH23485.1| tyrosine recombinase XerD [Neisseria polysaccharea ATCC 43768]
          Length = 219

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 5/116 (4%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R+LS  K    ++++  + T++    ++  K   ++P  + E+Q   L+      T 
Sbjct: 66  SQARALSACKRLYIWMEREGMRTDNPTRLLKPPKIDKNIPTLITEQQISRLLSAPDTDTP 125

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
           H       R+ A+L L+Y  GLR+SEA+ L+  N+  D+  +   GKG+K RIVP+
Sbjct: 126 H-----GLRDKALLELMYATGLRVSEAVRLSFGNLDLDRGCITTLGKGNKQRIVPM 176


>gi|258649152|ref|ZP_05736621.1| integrase [Prevotella tannerae ATCC 51259]
 gi|260850814|gb|EEX70683.1| integrase [Prevotella tannerae ATCC 51259]
          Length = 407

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 16/148 (10%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            ++ C  GL   +  +LTP NI  +DD+  +  + +   +    LL  + K I+  Y   
Sbjct: 249 FIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTNVETNVLLLDIPKRIIAKYGHK 308

Query: 218 PF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
            + D  L   LP+   +  + +N      Y++++    G+  + T H  RH+FAT  LS 
Sbjct: 309 TYRDGKL---LPV---LTNQKINA-----YLKEIGDLCGIKKNLTFHLARHTFATMSLSK 357

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           G  + S+  +LGH  L TTQIY  + +K
Sbjct: 358 GVPMESVSKMLGHTNLKTTQIYARITNK 385


>gi|149200657|ref|ZP_01877656.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149136258|gb|EDM24712.1| phage integrase [Lentisphaera araneosa HTCC2155]
          Length = 242

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 87/196 (44%), Gaps = 30/196 (15%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++K     +  F +Y+ KR    E   L +  + +  SLP  L++       D  LL  S
Sbjct: 67  TVKMDRCALSFFYQYVLKR----EWKWLEIVRIPRVKSLPDILSQ-------DETLLILS 115

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS 205
           H  K   AR    L  +Y  GLRISE + +   +I  D+  L ++  KG K R+VPL P 
Sbjct: 116 HLEK---ARYRTCLTAIYSMGLRISEGVRIQTGDICKDRMRLHVRNSKGYKDRLVPL-PQ 171

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---------LNPGVFQRYIRQLRRYLGL 256
           V   +L  Y    + ++ N  L LF    GK          ++ G  Q   +      GL
Sbjct: 172 VTYQMLRDY----WVMHRN-PLLLFPRYAGKSRSNSKTTLHMDKGGVQSAFKAALADSGL 226

Query: 257 PLSTTAHTLRHSFATH 272
               + H+LRHS+ATH
Sbjct: 227 AKQVSVHSLRHSYATH 242


>gi|29350147|ref|NP_813650.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29342059|gb|AAO79844.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 407

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 13/165 (7%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKG-DKIRIVPLLP--SVRKAILEYYDL 216
            ++ C  GL  S+   L  ++I++D + +R   KG  K +I+  +P   +   ILE Y  
Sbjct: 251 FVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQKTKIMCNIPLMEIPLKILEKYST 310

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
             +     +  P+   +  + +N      Y+++L    G+  + T H  RH+FAT  L+N
Sbjct: 311 NEYCKKHGVLFPV---LCNQKMNA-----YLKELADICGIKKTLTTHVGRHTFATFALAN 362

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           G  + S+  +LGH  +  T+ Y  V  +     M +I    H SI
Sbjct: 363 GVSIESVAKMLGHTNVQMTRHYARVLDRTVIREMSQIKMDFHISI 407


>gi|296169384|ref|ZP_06851007.1| XerC/XerD family integrase/recombinase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295895934|gb|EFG75626.1| XerC/XerD family integrase/recombinase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 388

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 41/75 (54%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LFRG  G P+ P      +    R  GL ++   H LRH+F ++++  G  +  +  ++G
Sbjct: 293 LFRGRIGAPMRPDAIGELMAAASRRAGLDVAVRPHQLRHAFGSNVVDAGAGIDVVADLMG 352

Query: 289 HFRLSTTQIYTNVNS 303
           H  +S++Q+Y + +S
Sbjct: 353 HAAVSSSQVYLHPDS 367


>gi|262067553|ref|ZP_06027165.1| integrase/recombinase [Fusobacterium periodonticum ATCC 33693]
 gi|291378728|gb|EFE86246.1| integrase/recombinase [Fusobacterium periodonticum ATCC 33693]
          Length = 328

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 128/295 (43%), Gaps = 40/295 (13%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTI----RQLSYTEIRAFISKRRTQKIGDRS 87
           S+ T++ Y    + FL F+ +  E   +I  +    + +   ++ A+I         DR 
Sbjct: 33  SEKTVKDYMFHLKDFLHFV-YEGENDFSISEVIPLMQDIEKEDVEAYI----VHLFEDRK 87

Query: 88  LKRS-----LSGIKSFLKYLKKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLV 138
           LK++     LS +KS  K L+   +      + +    RN++  N L  ++++ + +   
Sbjct: 88  LKKTSVNTILSALKSLYKELESNGLKNPVKYIKLFKVNRNIE--NVLKVSIDDIRKII-- 143

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLR-IQGKGD 195
              L     E K+   RN  ILY L+  G+R  E L+L  ++ +  +D+   + +Q K  
Sbjct: 144 --ELYKIDSEKKY---RNITILYTLFYTGMRSKELLTLQFKHFLRREDEYFFKLVQTKSG 198

Query: 196 KIRIVPLLPSVRKAILEY-------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           K    P+  S+ K + EY       Y L   DL+ +            PL+       I+
Sbjct: 199 KDVYKPVHKSLVKKLEEYRSYLMNMYSLDSKDLDEHYIFATSVS-NNSPLSYRSLNVIIQ 257

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            + + +   +S   H +RH+ AT L  NG D+  I+  LGH     T++Y N  S
Sbjct: 258 DMGKLIEKDIS--PHNIRHAIATELSLNGADILEIRDFLGHSDTKVTEVYINARS 310


>gi|9632962|ref|NP_049990.1| integrase [Streptococcus phage Sfi21]
 gi|5524043|gb|AAD44095.1|AF115103_25 orf359 gp [Streptococcus phage Sfi21]
 gi|2292758|emb|CAA64931.1| integrase [Streptococcus phage Sfi21]
 gi|2897103|gb|AAC03454.1| integrase homolog [Streptococcus phage TP-J34]
          Length = 359

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 7/145 (4%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           A LY++   G+R +E L LT  +I  D   L +    D       +P+  K+ +    L 
Sbjct: 191 AALYIIAKTGIRFAECLGLTVDDIKRDTGMLSVNKTWDYKNNTGFMPTKTKSSIREIPLD 250

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
              +N   QLP     R   + P +    + + LR+ +G  +    H+LRH++A++L+++
Sbjct: 251 DEFINFIDQLPPTDDGR---ILPSLSNNAVNKTLRKIVGREVR--VHSLRHTYASYLIAH 305

Query: 277 GGDLRSIQSILGHFRLSTT-QIYTN 300
             DL S+  +LGH  L+ T ++Y +
Sbjct: 306 DIDLISVSQVLGHENLNITLEVYAH 330


>gi|262381576|ref|ZP_06074714.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|262296753|gb|EEY84683.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
          Length = 406

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 23/173 (13%)

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI 199
           ++L      K ++      ++ ++  GL  S+   L+P++++ D++  L I+    K +I
Sbjct: 232 IILAKEFTIKRVEQVRDVFIFCVFT-GLAFSDVKDLSPEHLVRDNKGELWIRKNRQKTKI 290

Query: 200 ---VPLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
              +P+LP V  +ILE Y     C   L     LP+    R           Y++++   
Sbjct: 291 MCNIPVLP-VAASILEKYKNVAECTGKL-----LPVLSNQR--------MNSYLKEIADV 336

Query: 254 LGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            GL  +   H+ RHS+AT + L+NG  + ++  +LGH   S T+ Y  V  +N
Sbjct: 337 CGLQKNLCTHSARHSYATSICLANGVSMENVAKMLGHADTSVTKHYARVLDQN 389


>gi|170735536|ref|YP_001774650.1| integrase family protein [Burkholderia cenocepacia MC0-3]
 gi|169821574|gb|ACA96155.1| integrase family protein [Burkholderia cenocepacia MC0-3]
          Length = 578

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 129/319 (40%), Gaps = 65/319 (20%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +ERG  LS LT +    D   +  F+   T  +  +  +R     + R F     +  + 
Sbjct: 258 VERGRALSSLTTE----DALAYRAFIRRPTPHERWVGPVRPRGAPDWRPF-----SGALS 308

Query: 85  DRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSL--PRALNEKQAL---TL 137
            RS   +LS + +  ++L +++  +      + +R+ + + +L    A  E + L   T+
Sbjct: 309 ARSAAYTLSVLGALFRWLIEQRYLLANPFAGVKVRDTRGATALDTSHAFTEGEWLLVRTI 368

Query: 138 VDNV-----LLHTSHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDD---QS 186
            D +         + ++ W  A    + ++L   Y  GLR SE +  T  +I  D    +
Sbjct: 369 ADGLEFGKRTADGAPQSGWTPAAAQRLRFILDFGYATGLRASELVGATLGDIETDAHGDA 428

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP------ 240
            L++ GKG K   V L P  R A+  Y         +  +LP+   +R +P  P      
Sbjct: 429 WLKVIGKGSKAARVALPPLARTALDRYL--------VARRLPVT-PVRWRPDTPLIPRLA 479

Query: 241 -------------GVFQRYIRQLRRYLGLPLSTTAHTLR--------HSFATHLLSNGGD 279
                         V QR+  Q    +       AH LR        H+ ATH L+ G +
Sbjct: 480 EDDAAAITSVRLWKVMQRFFAQTADAVEADHPALAHKLRQASPHWMRHTHATHALARGAE 539

Query: 280 LRSIQSILGHFRLSTTQIY 298
           L +++  L H  +STT IY
Sbjct: 540 LTTVRDNLRHASISTTSIY 558


>gi|329955504|ref|ZP_08296412.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
 gi|328525907|gb|EGF52931.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
          Length = 333

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 70/148 (47%), Gaps = 21/148 (14%)

Query: 163 LYGC--GLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           L+ C  GLRIS+ L LT  NI    D+   +RI    +K      LP   +A+    +LC
Sbjct: 190 LFSCMTGLRISDILQLTWDNIEVGPDNGYYIRICT--EKTETEATLPISNEAL----ELC 243

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
               +  +   L R +  +PL         +Q     G+    T H  RHS+A   +S G
Sbjct: 244 GIPGSGRVFKGLTRAMTNQPL---------KQWISEAGIKKHITFHCFRHSYAVIQISLG 294

Query: 278 GDLRSIQSILGHFRLSTTQIYTN-VNSK 304
            D+ ++  +L H  +STTQIY + VNSK
Sbjct: 295 TDIYTVSKMLTHKNVSTTQIYADLVNSK 322


>gi|229000404|ref|ZP_04159960.1| Site-specific recombinase, phage integrase [Bacillus mycoides
           Rock3-17]
 gi|228759361|gb|EEM08351.1| Site-specific recombinase, phage integrase [Bacillus mycoides
           Rock3-17]
          Length = 360

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 92/217 (42%), Gaps = 22/217 (10%)

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           LK +L  +  F+K+   RK + E + L    L +   + ++ + K      D VLLH   
Sbjct: 133 LKEALIKLDPFIKFEGFRKDSKEIDFLTKDELNRLLKVAKSYSNKSYKHFRDYVLLH--- 189

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLP 204
                         LL     RI+EAL L+P +I     T  I+    K  K R+VPL  
Sbjct: 190 --------------LLIDGMFRITEALLLSPLDIDHTNKTTIIRSNNAKSRKARVVPLSN 235

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
              + +++  +         +   +F  + G+ L+     R +R+      +      H 
Sbjct: 236 KTYRLLMQLLEENE-AFEGEVDDLIFLSLSGRMLSKNNVLRDMRKYAVEANITKRFYLHL 294

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +RHS ATH LS  GD+ S++ ILGH  L     Y ++
Sbjct: 295 IRHSAATHHLST-GDIESLRKILGHIDLRMVLHYAHM 330


>gi|188532702|ref|YP_001906499.1| Bacteriophage 186 integrase [Erwinia tasmaniensis Et1/99]
 gi|188027744|emb|CAO95599.1| Bacteriophage 186 integrase [Erwinia tasmaniensis Et1/99]
          Length = 342

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 67/308 (21%), Positives = 116/308 (37%), Gaps = 42/308 (13%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDT--------RQFLIFLAFYTEEKIT 59
           E ++FE    +  W +  E  R L +L    Y            RQ  +  AF    +  
Sbjct: 35  EALAFEQFTVQNPWQEEREDRRTLKELVDAWYSAHGITLKDGIRRQQAMHHAFGCMGEPL 94

Query: 60  IQTIRQLSYTEIRA------FISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESN 112
            +      ++  R       +    R +++  R+L   L+  ++    L +  +   E+ 
Sbjct: 95  ARDFDAQMFSRYRERRLKGEYARSNRVKEVSPRTLNLELAYFRAVFNELNRLGEWKGENP 154

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           + NMR  + +      L   Q   L+D    H   + +        ++ +    G R SE
Sbjct: 155 LKNMRPFRTAEMEMAWLTHDQIALLLDECKRHDHPDLE-------TVVRICLATGARWSE 207

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
           A SL   ++   + T     KG K R VP+         E Y+  P D    +    +  
Sbjct: 208 AESLKKSHLAKYKITY-TNTKGRKNRTVPISK-------ELYESLPDDKKGRLFSDCY-- 257

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                   G F+  +   R  + LP     H LRH+FA+H + NGG++  +Q +LGH  +
Sbjct: 258 --------GAFRSALE--RTGIELPAGQLTHVLRHTFASHFMMNGGNILVLQRVLGHTDI 307

Query: 293 STTQIYTN 300
             T  Y +
Sbjct: 308 KMTMRYAH 315


>gi|148544222|ref|YP_001271592.1| site-specific tyrosine recombinase XerS [Lactobacillus reuteri DSM
           20016]
 gi|184153585|ref|YP_001841926.1| site-specific tyrosine recombinase XerS [Lactobacillus reuteri JCM
           1112]
 gi|227364653|ref|ZP_03848711.1| site-specific tyrosine recombinase XerS [Lactobacillus reuteri
           MM2-3]
 gi|325682232|ref|ZP_08161749.1| phage integrase family integrase/recombinase [Lactobacillus reuteri
           MM4-1A]
 gi|148531256|gb|ABQ83255.1| phage integrase family protein [Lactobacillus reuteri DSM 20016]
 gi|183224929|dbj|BAG25446.1| integrase [Lactobacillus reuteri JCM 1112]
 gi|227070324|gb|EEI08689.1| site-specific tyrosine recombinase XerS [Lactobacillus reuteri
           MM2-3]
 gi|324978071|gb|EGC15021.1| phage integrase family integrase/recombinase [Lactobacillus reuteri
           MM4-1A]
          Length = 359

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 6/168 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI+ L+ G G+R+SEA ++   ++   QS L +  KG +   VP+ P     I  Y 
Sbjct: 189 RDIAIIALILGTGVRVSEAANVNLGDLNLKQSLLDVTRKGGQRDSVPIAPWAITYIKAYQ 248

Query: 215 DLCPFDLN-LNIQLPLFRGIRGKP---LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            +     + L      F  +  K    +     ++ +++     G PL  T H LRH+ A
Sbjct: 249 AIRAQRYHALKKDTAFFLTVYHKQTRRMTANAIEKMVKKYSTAFGHPL--TPHKLRHTLA 306

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + +     D   +   LG    S T +YT+V+ K   D + EI + ++
Sbjct: 307 SEMYEVTKDQVLVAQQLGQKGTSATDLYTHVDQKQQRDALKEISETSY 354


>gi|260844019|ref|YP_003221797.1| putative integrase [Escherichia coli O103:H2 str. 12009]
 gi|257759166|dbj|BAI30663.1| putative integrase [Escherichia coli O103:H2 str. 12009]
          Length = 312

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           +L   G R  E  +L  + ++  + T   + K  K R VP+  S+ + I +         
Sbjct: 175 ILLSTGARWGEVAALEQRRVLHCRITFS-KTKNSKNRTVPITESLFEKIKK--------- 224

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGD 279
                    RG  GK + P +    +R + + +   +P     H LRH+FA+H + NGG+
Sbjct: 225 ---------RG--GKLVFPTLDYSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGN 273

Query: 280 LRSIQSILGHFRLSTTQIYTNV 301
           + ++Q ILGH ++ TT IY ++
Sbjct: 274 ILTLQKILGHAKIQTTMIYAHL 295


>gi|298482012|ref|ZP_07000201.1| transposase [Bacteroides sp. D22]
 gi|298271876|gb|EFI13448.1| transposase [Bacteroides sp. D22]
          Length = 407

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 13/165 (7%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKG-DKIRIVPLLP--SVRKAILEYYDL 216
            ++ C  GL  S+   L  ++I++D + +R   KG  K +I+  +P   +   ILE Y  
Sbjct: 251 FVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQKTKIMCNIPLMEIPLKILEKYST 310

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
             +     +  P+   +  + +N      Y+++L    G+  + T H  RH+FAT  L+N
Sbjct: 311 NEYCKKHGVLFPV---LCNQKMNA-----YLKELADICGIKKTLTTHVGRHTFATFALAN 362

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           G  + S+  +LGH  +  T+ Y  V  +     M +I    H SI
Sbjct: 363 GVSIESVAKMLGHTNVQMTRHYARVLDRTVIREMSQIKMDFHISI 407


>gi|215486887|ref|YP_002329318.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
 gi|291282843|ref|YP_003499661.1| integrase [Escherichia coli O55:H7 str. CB9615]
 gi|215264959|emb|CAS09345.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
 gi|290762716|gb|ADD56677.1| integrase [Escherichia coli O55:H7 str. CB9615]
          Length = 324

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 19/140 (13%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           +L   G R  E  +L  + ++  + T   + K  K R VP+  S+ + I +      F  
Sbjct: 188 ILLSTGARWGEVAALEQRRVLHCRITFS-KTKNSKNRTVPISESLFEKIKKRGGKLVFP- 245

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
              +  PL R +  K + P V              P     H LRH+FA+H + NGG++ 
Sbjct: 246 --TLDYPLVRDVI-KTVAPDV--------------PDGQAVHALRHTFASHFMMNGGNIL 288

Query: 282 SIQSILGHFRLSTTQIYTNV 301
           ++Q ILGH ++ TT IY ++
Sbjct: 289 TLQKILGHAKIQTTMIYAHL 308


>gi|304320725|ref|YP_003854368.1| Phage integrase [Parvularcula bermudensis HTCC2503]
 gi|303299627|gb|ADM09226.1| Phage integrase [Parvularcula bermudensis HTCC2503]
          Length = 421

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 94/230 (40%), Gaps = 28/230 (12%)

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
           G  + KR++   KS L Y+K      ++   N+R L       R L+  +A  L   +  
Sbjct: 194 GTGTAKRTMVSFKSVLAYMKDIGFVDQNVAANLR-LAPDGKKERYLSVAEAHRLGKCL-- 250

Query: 144 HTSHETKWIDARNSAI--LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
               E + +D R + I  + LL   G R  E   L    I  D+S  R +       I P
Sbjct: 251 ---DEWEQMDRRMTGITIIRLLLMTGARTKEIEELKWSEIDFDRSFFRFEETKSGRSIRP 307

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV-----FQRYIRQLRRYLGL 256
           + P V   +     L P  + LN              N G       Q   R +R   GL
Sbjct: 308 ISPQVLDILKGLPRLHPTWVFLN--------------NAGTGPYCGTQAVWRLVREEAGL 353

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           P     H LRHSFA+  L+NG  L  I ++LGH R  TTQ Y +++ ++ 
Sbjct: 354 P-DVRKHDLRHSFASFALANGLSLPVIGTLLGHSRPETTQRYAHLSDRHA 402


>gi|288802660|ref|ZP_06408098.1| integrase [Prevotella melaninogenica D18]
 gi|299141691|ref|ZP_07034827.1| integrase [Prevotella oris C735]
 gi|288334810|gb|EFC73247.1| integrase [Prevotella melaninogenica D18]
 gi|298577027|gb|EFI48897.1| integrase [Prevotella oris C735]
          Length = 403

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 17/157 (10%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MD-DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
            L+ C  GL   +  +LTP NI  MD  Q  +  + K D +  + LL  + K I++ Y+ 
Sbjct: 224 FLFSCFTGLAYVDVANLTPDNIITMDGKQWIVTARQKTDTLSHILLL-DIPKIIIKKYEG 282

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
              +  L   +P+    R           Y++++    G+  + T H  RH+FAT +L+ 
Sbjct: 283 KAKNGRL---IPILSNQR--------MNSYLKEIADVCGINKNLTFHMARHTFATMMLTK 331

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           G  + S+  +LGH  ++TTQ+Y  + +K   + M+ +
Sbjct: 332 GVPVESVSKMLGHTSITTTQLYARITNKKIENDMLAV 368


>gi|228470660|ref|ZP_04055516.1| putative tyrosine type site-specific recombinase [Porphyromonas
           uenonis 60-3]
 gi|299143043|ref|ZP_07036164.1| integrase [Prevotella oris C735]
 gi|228307668|gb|EEK16647.1| putative tyrosine type site-specific recombinase [Porphyromonas
           uenonis 60-3]
 gi|298575494|gb|EFI47379.1| integrase [Prevotella oris C735]
          Length = 427

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 89/211 (42%), Gaps = 38/211 (18%)

Query: 131 EKQALTLVD--NVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQS 186
           E+ ALT  D   +L +  H +      N   L  L GC  GL  S+   L     MDD  
Sbjct: 219 ERNALTADDLQKLLAYRPHRS----TDNHCRLIFLLGCFTGLAFSDLKKLR----MDDVY 270

Query: 187 TLR--------IQGKGDKIRIVPLLPSVRK--AILEYYDLCPFDLNLNIQLPLFRGIRGK 236
           T           + K     IVPLLP   K  AI+ +            +  LF   R  
Sbjct: 271 TFGDGRRYISLCRTKTQNRSIVPLLPVAEKILAIVSH----------GRREGLF--FREF 318

Query: 237 PLNPGVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLS 293
           P N   F R I+++    GLP  T  T+HT RH+FAT + L NG  + ++  +LGH  +S
Sbjct: 319 PSNSN-FNRTIQEICIKAGLPPHTQATSHTARHTFATTICLENGLPIETVSKMLGHRFIS 377

Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           TT+IY  V        M  +    H  + +K
Sbjct: 378 TTEIYARVTKSKIAKEMQPLMGSEHTRVLRK 408


>gi|304384214|ref|ZP_07366629.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
 gi|325270616|ref|ZP_08137214.1| tyrosine type site-specific recombinase [Prevotella multiformis DSM
           16608]
 gi|304334715|gb|EFM00993.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
 gi|324987011|gb|EGC18996.1| tyrosine type site-specific recombinase [Prevotella multiformis DSM
           16608]
          Length = 387

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 85/210 (40%), Gaps = 36/210 (17%)

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTL 188
           E+ ALT  D   L      + +D  N   L  L GC  GL  S+   L     MDD  T 
Sbjct: 179 ERNALTADDLQKLLAYRPHRSVD--NHCRLIFLLGCFTGLAFSDLKKLR----MDDVYTF 232

Query: 189 R--------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG---IRGKP 237
                     + K     IVPLLP   K              L I  P  R     R  P
Sbjct: 233 GDGRRYISLCRTKTQNRSIVPLLPIAEKI-------------LAIVSPGRREGLFFREFP 279

Query: 238 LNPGVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLST 294
            N   F R I+++    GLP  T  T+HT RH+FAT + L NG  + ++  +LGH  +ST
Sbjct: 280 SNSN-FNRTIQEICIKAGLPPHTQATSHTARHTFATTICLENGLPIETVSKMLGHRFIST 338

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           T+IY  V        M  +    H  + +K
Sbjct: 339 TEIYARVTKSKIAKEMQPLMGSEHTRVLRK 368


>gi|132267|sp|P18021|REDM_ECOLX RecName: Full=Resolvase; AltName: Full=Protein D
 gi|144169|gb|AAA23010.1| ORF [Plasmid pColBM-C1139]
 gi|147038|gb|AAA24255.1| D protein [Plasmid ColBM-Cl139]
          Length = 260

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 40/182 (21%)

Query: 153 DARNSAILYLLYGCGLRISEAL-------SLTPQNIMDDQSTL------------RIQGK 193
           D R   +L  L+  G RI+EAL       SLTP       +TL            R+   
Sbjct: 57  DLRRKMLLATLWNTGARINEALALTRGDFSLTPPYPFVQLATLKQRTEKAARTAGRMPAG 116

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR 251
               R+VPL  S   + L+        +   +++P+ R  +  G+     +++   R +R
Sbjct: 117 QQTHRLVPLSDSWYVSQLQ-------TMVATLKIPMERRNKRTGRTEKARIWEVTDRTVR 169

Query: 252 RYLG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            ++G              +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT
Sbjct: 170 TWIGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYT 229

Query: 300 NV 301
            V
Sbjct: 230 KV 231


>gi|323181030|gb|EFZ66568.1| integrase domain protein [Escherichia coli 1180]
          Length = 233

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 5/78 (6%)

Query: 229 LFRGIR---GKPLNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSI 283
           LF  I+   GK + P +    +R + + +   +P     H LRH+FA+H + NGG++ ++
Sbjct: 140 LFEKIKKRGGKLVFPTLDYSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTL 199

Query: 284 QSILGHFRLSTTQIYTNV 301
           Q ILGH ++ TT IY ++
Sbjct: 200 QKILGHAKIQTTMIYAHL 217


>gi|167762114|ref|ZP_02434241.1| hypothetical protein BACSTE_00465 [Bacteroides stercoris ATCC
           43183]
 gi|167765046|ref|ZP_02437167.1| hypothetical protein BACSTE_03440 [Bacteroides stercoris ATCC
           43183]
 gi|167697715|gb|EDS14294.1| hypothetical protein BACSTE_03440 [Bacteroides stercoris ATCC
           43183]
 gi|167700073|gb|EDS16652.1| hypothetical protein BACSTE_00465 [Bacteroides stercoris ATCC
           43183]
          Length = 401

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 96/204 (47%), Gaps = 31/204 (15%)

Query: 102 LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
            +K KI T  N       K ++ +P  L + + L+L D    H   + K +DA     L+
Sbjct: 196 FRKYKIKTVEN-------KHTHLVPEELEQLERLSLTDK---HMKLQ-KSLDA----FLF 240

Query: 162 LLYGCGLRISEALSLTPQNIMD-DQSTLRIQGK---GDKIRIVPLLPSVRKAILEYYDLC 217
             Y  G+R S+  +L+ +NI+D +Q T  I      G ++R+   L    K I+    L 
Sbjct: 241 CCYA-GMRYSDFTNLSKKNIVDINQETWLIYKSVKTGTEVRLPLYLLFAGKGIV---ILN 296

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            +  NL      FR      +N  +       + +  GL    + HT RH+ AT L+ NG
Sbjct: 297 KYRNNLE---DFFRLRDNSNINKDLII-----IAKLAGLSKKISFHTARHTNATLLIYNG 348

Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301
            ++ ++Q +LGH  + TTQ+YTN+
Sbjct: 349 VNITTVQKLLGHKSVKTTQVYTNI 372


>gi|284112236|ref|ZP_06386560.1| Tyrosine recombinase [Candidatus Poribacteria sp. WGA-A3]
 gi|283829717|gb|EFC34040.1| Tyrosine recombinase [Candidatus Poribacteria sp. WGA-A3]
          Length = 259

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 70/166 (42%), Gaps = 25/166 (15%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-------RIQGKGDKIRIVPLLPSVR 207
           RN  +  L    G RISE LSLT  ++  +   +       +I   G+  R VP+    R
Sbjct: 27  RNRGLFMLGVSTGGRISELLSLTIGDVYQNGKPVTDLLFDKKIVKGGEVSRAVPVNTDGR 86

Query: 208 KAIL--------EYYDLCPFDLNLNIQLPLF--RGIRGK-PLNPGVFQRYIRQLRRYLGL 256
            AI         +Y  + P         PLF  R   G   +N       +++  +  GL
Sbjct: 87  TAIENLIDWHREKYKTIAP-------SRPLFPSRNKNGSVAMNRQTAHEMLKKAFQAAGL 139

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                 H+LR SFA  +    GD+  +Q +LGH  +STTQ Y  VN
Sbjct: 140 NGKLATHSLRKSFAQRVYEESGDIYLVQELLGHRNVSTTQKYIGVN 185


>gi|281491512|ref|YP_003353492.1| phage integrase [Lactococcus lactis subsp. lactis KF147]
 gi|281375230|gb|ADA64743.1| Phage protein, integrase [Lactococcus lactis subsp. lactis KF147]
          Length = 273

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 22/152 (14%)

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
            G+RISE  S   +++  ++  + I+ KG K RI+ +   ++K +  Y      +     
Sbjct: 137 TGMRISEVCSFKVEDL--NKKIIVIENKG-KQRIITIPQFLKKQLKSYVKKAGIE----- 188

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL----STTAHTLRHSFATHLLSNGGDLR 281
           +   ++  R   +N          L++  G+          H++RH FA   L NGGD  
Sbjct: 189 ETIFYKNQRTYRVN----------LKKIAGIAKVNKEKVYPHSIRHYFAKSFLMNGGDAT 238

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            +Q +LGH +++TT IYT ++S    D   +I
Sbjct: 239 VLQQLLGHEQIATTTIYTKLSSNELSDQFSKI 270


>gi|217967670|ref|YP_002353176.1| integrase domain protein SAM domain protein [Dictyoglomus turgidum
           DSM 6724]
 gi|217336769|gb|ACK42562.1| integrase domain protein SAM domain protein [Dictyoglomus turgidum
           DSM 6724]
          Length = 227

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 6/139 (4%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           + +LS   I+ +IS  R + +   S+   +  IKSFL +L       E+    ++  K  
Sbjct: 45  LEELSVYSIQKYISSLRERGLKPASIDTHIRAIKSFLHFLYDEGYLEENISAKIKRYKLP 104

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI- 181
            S P  LN++Q L      LL    +  W   RN  I+      G+R+SE L+LT  ++ 
Sbjct: 105 KSYPHILNDEQILN-----LLKVCDKKSWDSFRNYVIVLTFLDTGIRLSELLNLTVNDVN 159

Query: 182 MDDQSTLRIQGKGDKIRIV 200
           +  +S     GKG+K R V
Sbjct: 160 LPKRSIFIRSGKGEKDREV 178


>gi|116512034|ref|YP_809250.1| site-specific tyrosine recombinase XerS [Lactococcus lactis subsp.
           cremoris SK11]
 gi|122940166|sp|Q02YZ4|XERS_LACLS RecName: Full=Tyrosine recombinase xerS
 gi|116107688|gb|ABJ72828.1| tyrosine recombinase XerC subunit [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 356

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 109/261 (41%), Gaps = 38/261 (14%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-------KKSNSLP-RALNEKQA 134
           +   ++ R+LS + S  KYL +     +      RN+       KKS +L  RA N K  
Sbjct: 101 VSQTTINRTLSALSSLYKYLTEEVENEDGEPYFYRNVMKKVQTKKKSETLASRAENIKGK 160

Query: 135 LTLVDNV--------------LLHTSHETKWID-ARNSAILYLLYGCGLRISEALSLTPQ 179
           L L D                L + +H + + +  R+ AI+ L+   G+R+SEA+++  +
Sbjct: 161 LFLGDETQGFLDYIDSEYEKTLSNRAHSSFFKNKERDLAIIALILASGIRLSEAVNVDLR 220

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY-------YDLCPFDLNLNIQLPLFRG 232
           ++  +   + +  KG K   VP  P  +     Y       Y     D    +   L+R 
Sbjct: 221 DLNLNTMIVEVTRKGGKRDAVPFAPFAKTYFERYLEVRSQRYKTTAKDTAFFV--TLYRD 278

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           I  + ++P   ++ + +  +     +  T H LRH+ AT L +       + + LGH   
Sbjct: 279 IASR-IDPSSVEKLVAKYSQ--AFKVRVTPHKLRHTLATRLYAQTNSQVLVSNQLGHAST 335

Query: 293 STTQIYTNV---NSKNGGDWM 310
             T +YT++     KN  D +
Sbjct: 336 QVTDLYTHIINEEQKNALDSL 356


>gi|323170034|gb|EFZ55690.1| integrase [Escherichia coli LT-68]
          Length = 285

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 5/78 (6%)

Query: 229 LFRGIR---GKPLNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSI 283
           LF  I+   GK + P +    +R + + +   +P     H LRH+FA+H + NGG++ ++
Sbjct: 191 LFEKIKKRGGKLVFPTLDYSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTL 250

Query: 284 QSILGHFRLSTTQIYTNV 301
           Q ILGH ++ TT IY ++
Sbjct: 251 QKILGHAKIQTTMIYAHL 268


>gi|212694179|ref|ZP_03302307.1| hypothetical protein BACDOR_03705 [Bacteroides dorei DSM 17855]
 gi|224026237|ref|ZP_03644603.1| hypothetical protein BACCOPRO_02993 [Bacteroides coprophilus DSM
           18228]
 gi|253572729|ref|ZP_04850129.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|254882550|ref|ZP_05255260.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|317480879|ref|ZP_07939960.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|329965174|ref|ZP_08302105.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|212663245|gb|EEB23819.1| hypothetical protein BACDOR_03705 [Bacteroides dorei DSM 17855]
 gi|224019473|gb|EEF77471.1| hypothetical protein BACCOPRO_02993 [Bacteroides coprophilus DSM
           18228]
 gi|251837629|gb|EES65720.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|254835343|gb|EET15652.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|316902964|gb|EFV24837.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|328523537|gb|EGF50634.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 415

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 9/138 (6%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G+R S+   L    + +     R+     K + V  +P   +A    Y LC  +   + +
Sbjct: 272 GMRHSDIQKLKWSEVEEYNGGYRLNFTQQKTKGVEYMPISPQA----YKLCG-ERKKDGE 326

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           L +F G+   P +P    R + +  +  G+    T H  RH++AT  L+NG D+ ++  +
Sbjct: 327 LLVFAGL---P-DPSWISRPLERWVKASGITKHITFHCFRHTYATLQLANGTDIYTVSKM 382

Query: 287 LGHFRLSTTQIYTNVNSK 304
           LGH  + TTQIY  V  K
Sbjct: 383 LGHTNVKTTQIYAKVIDK 400


>gi|317475117|ref|ZP_07934385.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316908761|gb|EFV30447.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 421

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 23/173 (13%)

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI 199
           ++L      K ++      ++ ++  GL  S+   L+P++++ D++  L I+    K +I
Sbjct: 247 IILAKEFTIKRVEQVRDVFIFCVFT-GLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKI 305

Query: 200 ---VPLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
              +P+LP V  +ILE Y     C   L     LP+    R           Y++++   
Sbjct: 306 MCNIPVLP-VATSILEKYKNVAECTGKL-----LPVLSNQR--------MNSYLKEIADV 351

Query: 254 LGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            GL  +   H+ RHS+AT + L+NG  + ++  +LGH   S T+ Y  V  +N
Sbjct: 352 CGLQKNLCTHSARHSYATSICLANGVSMENVAKMLGHADTSVTKHYARVLDQN 404


>gi|291087774|ref|ZP_06347445.2| site-specific DNA tyrosine recombinase, XerD [Clostridium sp.
           M62/1]
 gi|291073872|gb|EFE11236.1| site-specific DNA tyrosine recombinase, XerD [Clostridium sp.
           M62/1]
          Length = 286

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 9/150 (6%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
           +R S IL  L   G+RISE + +T + +   ++ + ++GK   +R+V +LP   +  +E 
Sbjct: 130 SRLSLILQTLGATGIRISELVCITREAVSSGRAAVNLKGK---MRVV-ILPKRLREKMEI 185

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATH 272
           Y  C    N     P+F    GKP++       ++ L +  G+       H LRH FA  
Sbjct: 186 Y--C--RENQIYSGPVFVTRGGKPVDRSNIWSEMKILCKTAGINEKKIFPHNLRHLFARI 241

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              N  D+  +  ILGH  + TT+IYT+++
Sbjct: 242 YYKNNHDIVYLADILGHSSVETTRIYTSIS 271


>gi|307149687|ref|YP_003890995.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306986753|gb|ADN18630.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 286

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 126/291 (43%), Gaps = 36/291 (12%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           LK  Q WL       G S  + +SY  D + FL F         T + I Q++  +I  +
Sbjct: 12  LKLIQMWLH------GKSPDSRRSYMRDIQDFLEF---------THKPIEQITIADIIDW 56

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEKQ 133
            S     +    S KR L+ IKS   +  K ++ + +    + + K  +++  R L E +
Sbjct: 57  DSAL-ALRYAPTSRKRKLAAIKSLFSFAHKNELISTNPGAAVPSPKTKDAISERILTEDE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRI 190
                   +L+        + ++  +L LLY    R+SE  +L  ++I    D  + + +
Sbjct: 116 W-----ERMLYAE-----PNRQHQLMLTLLYETRARVSEFCALKWKDIREKPDGAALVTL 165

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG+K R V + P + + +L+         +     PLF   R K  +     R ++  
Sbjct: 166 FGKGNKTRKVTITPQLWQ-VLKATKAA----DAKGDSPLFLNYRHKAYSTVQVWRIVKAA 220

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              +G+    + H +RH+ ATH L NG  L   Q  LGH  L+TT  Y ++
Sbjct: 221 GERVGI-YGVSPHWIRHTGATHQLINGSPLHLQQQELGHSGLNTTSKYLHI 270


>gi|222034355|emb|CAP77096.1| Phage integrase [Escherichia coli LF82]
 gi|312601703|gb|ADQ92377.1| integrase [Salmonella phage RE-2010]
          Length = 338

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 21/142 (14%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I  +    G R SEA +L    I   + T   + KG K R VP+                
Sbjct: 199 IAKICLATGARWSEAENLQGHQISKYRITY-TKTKGKKNRTVPI---------------- 241

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
              +L  +LP  RG    P     F+R ++  R  + LP     H LRH+FA+H + NGG
Sbjct: 242 -SQDLYHELPKNRGKLFTPCRKS-FERAVK--RAGIDLPEGQCTHVLRHTFASHFMMNGG 297

Query: 279 DLRSIQSILGHFRLSTTQIYTN 300
           ++  ++ ILGH  +  T +Y +
Sbjct: 298 NILVLRDILGHSDIKMTMVYAH 319


>gi|209916846|ref|YP_002291166.1| phage integrase [Escherichia coli SE11]
 gi|209915272|dbj|BAG80344.1| phage integrase [Escherichia coli SE11]
          Length = 332

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 10/160 (6%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK---IRIVPLLPSVRKA 209
           D R   +L L Y CGLR  E  ++   +I   Q  L ++ +  K    R+VP  P   + 
Sbjct: 149 DIRTRFMLALAYDCGLRREELCTVATGDIDPSQRLLTVRAEHTKNRFGRVVPYSPVTGEL 208

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGI----RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              +  L    +  + + PLF       R +P++   + + +R L     LPL +T HT 
Sbjct: 209 YTAW--LTERRMLSSSRGPLFLSRSPRNRAEPISNWTWSKVVRGLAIKADLPLIST-HTF 265

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           RH   T L   G D+  I +  GH R+ +T +Y ++++++
Sbjct: 266 RHLCLTELARVGWDIHEIAAFAGHRRIQSTLLYIHLSARD 305


>gi|331660306|ref|ZP_08361241.1| resolvase (Protein D) [Escherichia coli TA206]
 gi|331052573|gb|EGI24609.1| resolvase (Protein D) [Escherichia coli TA206]
          Length = 260

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 103/231 (44%), Gaps = 52/231 (22%)

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHT-------SHETKWI-----DARNSAILYLL 163
           + +++ +  LP A++   AL L    ++H        + E   +     D R   +L  L
Sbjct: 8   IHHVRDAAQLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPDLRRKMLLATL 67

Query: 164 YGCGLRISEAL-------SLTPQNIMDDQSTL--------RIQGK---GDKI-RIVPLLP 204
           +  G RI+EAL       SLTP       +TL        R  G+   G +  R+VPL  
Sbjct: 68  WNTGARINEALALTRGDFSLTPPYPFVQLATLKQRTEKAARTAGRTPAGQQTHRLVPLSD 127

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG------- 255
           S   + L+        +   +++P+ R  +  G+     +++   R +R ++G       
Sbjct: 128 SWYVSQLQ-------TMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTWIGEAVAAAA 180

Query: 256 -----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                  +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 181 ADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|260885794|ref|ZP_05735780.2| integrase [Prevotella tannerae ATCC 51259]
 gi|260851599|gb|EEX71468.1| integrase [Prevotella tannerae ATCC 51259]
          Length = 489

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 125/295 (42%), Gaps = 32/295 (10%)

Query: 30  GLSKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS- 87
            +S  TLQ Y    R FL FL   Y    I +    +L+YT IR F    RT  +G  + 
Sbjct: 209 SVSAATLQKYNVCRRHFLEFLQNGYRRADIKLS---ELTYTVIREFDIYLRTA-VGQNAN 264

Query: 88  -LKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLVDNVLLHT 145
              +++   K+ +   +K  +      LN R +L+  N   R         L D  ++  
Sbjct: 265 TATKTMKTFKTIVILGQKMGVLHHDPFLNHRFHLEPVN---RGF-------LTDEEIMKI 314

Query: 146 SHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVP 201
           +++   I          ++ C  GL   +  +LT  NI  +DD+  +  + +   +    
Sbjct: 315 ANKDFGIQRLELVRDVFIFSCFTGLAYIDVSNLTLDNIVTLDDKQWIMTKRQKTSVEANV 374

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           LL  + K+I+  Y    +         LF  +  +  N      Y++++    G+  + T
Sbjct: 375 LLLDIPKSIIAKYSHKTYR-----DGKLFPILSNQKTNS-----YLKEIADLCGIKKNLT 424

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            H  RH+FAT  LS G  + S+  +LGH  + TTQIY  + +K     M ++ D+
Sbjct: 425 FHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQLADK 479


>gi|324016996|gb|EGB86215.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 117-3]
          Length = 227

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 36/180 (20%)

Query: 153 DARNSAILYLLYGCGLRISEAL-------SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           D R   +L  L+  G RI+EAL       SLTP       +TL+ Q      R    +P+
Sbjct: 32  DLRRKMLLATLWNTGARINEALALTRGDFSLTPPYPFVQLATLK-QRTEKAARTAGRMPA 90

Query: 206 VRKAILEYYDLCPFD----------LNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRY 253
            ++     + L P            +   +++P+ R  +  G+     +++   R +R +
Sbjct: 91  GQQT----HRLVPLSDAWYVSQLQTMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTW 146

Query: 254 LG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +G              +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 147 IGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 206


>gi|327312659|ref|YP_004328096.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|326944074|gb|AEA19959.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 407

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 17/167 (10%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIR 198
           L+   +E +  + R + IL L   CGLR  +   LT +N+      L+ +    KG    
Sbjct: 240 LIQCHYENENPNVRRAFILCLY--CGLRFCDVKDLTYKNVDYTNRLLKFEQNKTKGHSAH 297

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
              ++P +   +L      P DL+ +I  LP +              + +++  +  G+ 
Sbjct: 298 SGVIIP-LNDGLLSLIGEAPEDLSSSIFNLPSYESC----------SKSVKRWVKRAGIN 346

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              + H  RHSFA ++L+NG +++++ S+LGH  L  T+ YT    K
Sbjct: 347 KHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|300866566|ref|ZP_07111255.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300335430|emb|CBN56415.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 181

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 75/159 (47%), Gaps = 23/159 (14%)

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR---IQGKGDKIRIVPLLPSVR 207
           ++ AR+  +  + + C  RISEAL+LT Q+I+    TLR    +GK    R +PL P + 
Sbjct: 25  FLTARDRLLFAVTFYCACRISEALALTTQDIIGGIVTLRKATTKGK-SATRTLPLHPMLA 83

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPG----VFQRYIRQLRRYLGLPLSTTA 262
           K +  Y     F         LF G  G KPL       +F+   +++R         + 
Sbjct: 84  KYLKAYNPDVGF---------LFPGREGTKPLTRSQADLIFKDACKRVRIK-----GAST 129

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H++R +  T+L + G  LR I  I GH  LS+ Q Y  V
Sbjct: 130 HSMRRTALTNLSNAGVPLRVIMEISGHKNLSSLQRYLEV 168


>gi|237717596|ref|ZP_04548077.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229453100|gb|EEO58891.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 406

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 23/173 (13%)

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI 199
           ++L      K ++      ++ ++  GL  S+   L+P++++ D++  L I+    K +I
Sbjct: 232 IILAKEFTIKRVEQVRDVFIFCVFT-GLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKI 290

Query: 200 ---VPLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
              +P+LP V  +ILE Y     C   L     LP+    R           Y++++   
Sbjct: 291 MCNIPVLP-VAASILEKYKNVAECTGKL-----LPVLSNQR--------MNSYLKEIADV 336

Query: 254 LGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            GL  +   H+ RHS+AT + L+NG  + ++  +LGH   S T+ Y  V  +N
Sbjct: 337 CGLQKNLCTHSARHSYATSVCLANGVSMENVAKMLGHADTSVTKHYARVLDQN 389


>gi|188587530|ref|YP_001922726.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179352489|gb|ACB86500.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 187

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 74/175 (42%), Gaps = 9/175 (5%)

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-----TLRIQGKGDKIR 198
           H     K  + R+  +  L    GLRIS+ L L   +++D+           + K  K +
Sbjct: 15  HIKRILKQKNKRDYCLFVLGINTGLRISDLLELKVSDLVDENGKPKKNLELKEKKTGKNK 74

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            + L    R AI EY       LN +I    F+  +G P++     R I +  + +G+  
Sbjct: 75  QMILNEKARSAIREYVQDSKLSLNDSI----FKSQKGGPISREHAYRVINEAAKAVGIKE 130

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
               HTLR +F  H   NG D+  IQ+I  H   S T  Y  +  ++  D  + I
Sbjct: 131 RVGTHTLRKTFGYHAYINGVDISLIQNIFNHSAPSVTLRYIGIEQEDIDDVYINI 185


>gi|158341559|ref|YP_001522723.1| phage integrase [Acaryochloris marina MBIC11017]
 gi|158311800|gb|ABW33409.1| phage integrase [Acaryochloris marina MBIC11017]
          Length = 337

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 12/186 (6%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS-YTEIRAFISKRRTQKIGDRS 87
           R +S  T ++YE D +QF+     +T++     T R L  Y         +R Q   + +
Sbjct: 48  REISSNTRKAYERDLKQFMD----WTDKGWHEITARDLDRYKNHLKTEPNQRGQLRRNAT 103

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           + R+L+ ++SF K+L  R    +   L +  LK    LP+  ++ +   L   +     H
Sbjct: 104 INRNLAALQSFFKWLTVRDYIPKDPTLLLEKLKADPVLPQEFSQDEVDKLYQAICDRGFH 163

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
                  R+ A+L+L+   GLR SE   L   +    + T+R+  K D +  VPLL   R
Sbjct: 164 AF-----RDRALLHLI-DHGLRASEIHRLNVGDYDGQRITIRV-AKADSVGTVPLLKKAR 216

Query: 208 KAILEY 213
           KAI +Y
Sbjct: 217 KAIDQY 222


>gi|158340183|ref|YP_001521353.1| phage integrase family protein [Acaryochloris marina MBIC11017]
 gi|158310424|gb|ABW32039.1| phage integrase family protein [Acaryochloris marina MBIC11017]
          Length = 190

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 71/159 (44%), Gaps = 15/159 (9%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL----LPSVRKA 209
           R+ A+L L++  GLR+SEA+SL    +M +   + I + KG      PL    + S++  
Sbjct: 38  RDKALLLLMFRHGLRVSEAISLRWDAVMLELKAIGITRLKGSVSGTHPLQADEVESLKDL 97

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
             E Y   P+         LF G RG  L        I +      L +    H LRHS 
Sbjct: 98  RAEGYP-DPY---------LFVGERGGHLKRHAVTSLINRCAELAQLGIKCHPHMLRHSC 147

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
             HL + G D R IQ  LGH  +  T  YT +N +  G+
Sbjct: 148 GYHLANQGLDTRLIQDWLGHRNIQHTVTYTMLNPRRFGE 186


>gi|9626516|ref|NP_040813.1| integrase [Acholeplasma phage L2]
 gi|1174961|sp|P42540|VINT_BPL2 RecName: Full=Probable integrase/recombinase; AltName: Full=ORF5
 gi|289344|gb|AAA87961.1| unknown [Acholeplasma phage L2]
          Length = 289

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 19/174 (10%)

Query: 149 TKWIDARNSAILY-----LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL 202
           TK +++  ++I Y     LL   GLR+SEAL++   ++      +R+   K  K R  P 
Sbjct: 119 TKNLNSSKNSITYKSFIRLLLDSGLRVSEALNIKISDMDFKNKVIRVLSSKTRKQRYAPF 178

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
                K I E  ++ P           +  I+ +  N    + + ++L+++L L    T 
Sbjct: 179 SSFSLKYIKELIEVNP-----KRDYLFYNFIKDRQTNKNDIKLFYKRLKKHLNLERIHT- 232

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG-------GDW 309
           H  R +FA+ L+ NG ++  +Q I  H R+ TT  Y   N K          DW
Sbjct: 233 HRFRKTFASILIENGLNIDDLQKIFDHSRIETTIKYVQHNEKRALQEYKKYNDW 286


>gi|329769602|ref|ZP_08261006.1| hypothetical protein HMPREF0433_00770 [Gemella sanguinis M325]
 gi|328838357|gb|EGF87966.1| hypothetical protein HMPREF0433_00770 [Gemella sanguinis M325]
          Length = 301

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 125/278 (44%), Gaps = 19/278 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-LSYTEIRA 73
            K+ QN+L +   ++  S  T+ SYE D R+  I+L            IR  L+   I  
Sbjct: 6   FKDFQNYLID---KKHFSSNTVNSYERDLRKLFIYL---DSNGYDCDDIRSWLTEVCINN 59

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNE 131
           ++   R  K    +L R++S +  + +YL  + I  +   ++++  K +    +    +E
Sbjct: 60  YMEYLRDNKYSAATLARTVSTVHVYSEYLFDKNIIKDKPQIDIKITKDAEHDLVIFTRDE 119

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
              +  +D + L+        D R+ AI  L Y  G++ +E ++L  +++  +   ++ +
Sbjct: 120 IAQILDIDTLTLN--------DFRDKAIFELSYSIGIKPTECINLEMKDVNLEIGYIKYR 171

Query: 192 GKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            K D  R V L     +AI  Y D L    + ++ +  LF    G+ ++   + +  ++ 
Sbjct: 172 -KQDGYRTVALNTESIEAIRNYLDALKKHKVPISEESKLFLNHDGEGISRQGYWKIFKKR 230

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           ++ L L         R+S A HLL +   ++ +Q ILG
Sbjct: 231 QKELELTKELNTMNFRNSLAVHLLEDNVPIQDVQEILG 268


>gi|224369728|ref|YP_002603892.1| XerC [Desulfobacterium autotrophicum HRM2]
 gi|223692445|gb|ACN15728.1| XerC [Desulfobacterium autotrophicum HRM2]
          Length = 409

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 104/230 (45%), Gaps = 19/230 (8%)

Query: 86  RSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
           ++++++L  I+SFL+YL +++I  T  ++   M   +K   +P    + +  TL+  ++ 
Sbjct: 176 KTVEQNLCSIRSFLRYLLEKEILKTDLASKTPMIQARKQTRIPSVWTKDELDTLIGAIVR 235

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPL 202
                      R+ AI+ L    GLR+++  +LT      + +  +  Q K  +   +PL
Sbjct: 236 GNPK-----GKRDYAIILLACVLGLRVTDIKNLTFDCFHWETKELIFTQSKTRETVTLPL 290

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLSTT 261
              V  A+++Y           +  P+       P  P   + ++ Q+ R Y+ +    T
Sbjct: 291 PSEVGWAVIDYLKYS----RPKVDSPIIFVRHLAPFLPFSEKDHLHQIIRDYMRIAHLPT 346

Query: 262 ------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
                  H+LRH+ A+ +L +G  L  I  ILGH    +T +Y  V+ K 
Sbjct: 347 LKKRRGMHSLRHTAASRMLEHGTPLVVISDILGHMDTDSTAVYLKVDIKK 396


>gi|323974510|gb|EGB69637.1| phage integrase [Escherichia coli TW10509]
          Length = 261

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 40/182 (21%)

Query: 153 DARNSAILYLLYGCGLRISEAL-------SLTPQNIMDDQSTL------------RIQGK 193
           D R   +L  L+  G RI+EAL       SLTP       +TL            R+   
Sbjct: 57  DLRRKMLLATLWNTGARINEALALTRGDFSLTPPYPFVQLATLKQRSEKAARTAGRMPAG 116

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR 251
               R+VPL  S   + L+        +   +++P+ R  +  G+     +++   R +R
Sbjct: 117 QQTHRLVPLSDSWYVSQLQ-------TMVATLKIPMERRNKRTGRTEKARIWEVTDRTVR 169

Query: 252 RYLG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            ++G              +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT
Sbjct: 170 TWIGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYT 229

Query: 300 NV 301
            V
Sbjct: 230 KV 231


>gi|239907872|ref|YP_002954613.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239797738|dbj|BAH76727.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 374

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 27/195 (13%)

Query: 107 ITTESNILN-MRNLKKSNSLPRALNEKQALTLVD--NVLLHTSHETKWIDARNSAILYLL 163
           +TT    +N M+  KKS   PR +     LT+ D   ++ H     +W        + + 
Sbjct: 178 VTTGLTTVNPMKGRKKSREKPRDVQ----LTVDDVKRIMDHAEPHVRWA-------MEVC 226

Query: 164 YGCGLRI--SEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           +  G R   SE L+L   +I  D+   +I   K    R+VP+ P++   + E        
Sbjct: 227 FSLGTRPGESELLALKWDHIDFDKGIAKIYASKTRTYRVVPISPTLLGKMKE-------- 278

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
           +    Q       RG+P+  G+ ++  R+     G+      + LRH FAT +LS G DL
Sbjct: 279 VKTESQSGYVIEWRGQPI--GMIRKGFRRACERAGITYPVRMYDLRHLFATTMLSKGADL 336

Query: 281 RSIQSILGHFRLSTT 295
            ++  +LGH  +STT
Sbjct: 337 AAVSKLLGHSMISTT 351


>gi|71281181|ref|YP_267649.1| phage integrase family site specific recombinase [Colwellia
           psychrerythraea 34H]
 gi|71146921|gb|AAZ27394.1| site-specific recombinase, phage integrase family [Colwellia
           psychrerythraea 34H]
          Length = 334

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 31/139 (22%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G R  EA  L  +N+ D+  T  I+ K  K RI+P+   ++  I E              
Sbjct: 205 GARWGEAEKLLSRNLRDNFITF-IKTKNGKTRIIPISDELKNEIPEK------------- 250

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLG-----LPLSTTAHTLRHSFATHLLSNGGDLR 281
                   G+     +F   ++  R  L      LP     H LRH+FA+H + NGG++ 
Sbjct: 251 -------EGR-----LFSDSMKTFRTSLAKTGITLPKGQATHALRHTFASHFMMNGGNIL 298

Query: 282 SIQSILGHFRLSTTQIYTN 300
            ++ ILGH R+  T  Y +
Sbjct: 299 VLKEILGHARIEETMKYAH 317


>gi|291514262|emb|CBK63472.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 407

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 16/151 (10%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYY 214
           A ++ LY CGLR  +   LT +N+      L+ +    KG       ++P +   +L   
Sbjct: 255 AFIFCLY-CGLRFCDVKDLTYKNVDYGNRLLKFEQSKTKGHSASSGVVIP-LNDGLLSII 312

Query: 215 DLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
              P D N L   LP +              + +++  +  G+    + H  RHSFA ++
Sbjct: 313 GEAPADKNCLIFDLPTYESC----------CKSVKRWVKRAGIDKHISWHCARHSFAVNI 362

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           L+NG +++++ S+LGH  L  T+ YT    K
Sbjct: 363 LNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|224025070|ref|ZP_03643436.1| hypothetical protein BACCOPRO_01804 [Bacteroides coprophilus DSM
           18228]
 gi|224018306|gb|EEF76304.1| hypothetical protein BACCOPRO_01804 [Bacteroides coprophilus DSM
           18228]
          Length = 418

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 102/249 (40%), Gaps = 25/249 (10%)

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-----KKSNSLPRALNEKQ 133
           R  K   R     +S +++F++Y  +R +  + N      +      K+  LP   + ++
Sbjct: 164 RELKRKKRPWHHVVSSVRAFVRYSCERNLLADCNFSRWDRILCLHRPKNPQLPSYYSREE 223

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQG 192
              ++D +             R+ A+L L    GLR S+ + +T  N   + + L  +Q 
Sbjct: 224 IKKMLDAIDRSCPK-----GKRDYAMLLLAARYGLRASDIVGITYANFEWEFNRLSLVQA 278

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLN-----LNIQLPLFRGIRGKPLNPGVFQRYI 247
           K  K    PL   +  AI++Y      D++     L    P  R      ++P    R +
Sbjct: 279 KTGKPVSFPLSEEIGSAIIDYIKFGRPDIDSPHVFLEHMAPYQR------ISPQALSRIV 332

Query: 248 RQLRRYLGLPLST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            +      + +ST     H+LRHS A +L  NG     I  ILGH  L TT  Y  V+ K
Sbjct: 333 SEWMLAARIDISTRKHGPHSLRHSLAINLFENGESPSVISEILGHSNLLTTMSYVKVDLK 392

Query: 305 NGGDWMMEI 313
           +     +E+
Sbjct: 393 HLRQCALEV 401


>gi|194447058|ref|YP_002039074.1| resolvase [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194358502|gb|ACF56946.1| resolvase [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
          Length = 268

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 97/226 (42%), Gaps = 52/226 (23%)

Query: 121 KSNSLPRALNEKQALTLVDNVLLHT-------SHETKWI-----DARNSAILYLLYGCGL 168
           +S  LP A++   AL L    ++H        + E   +     D R   +L  L+  G 
Sbjct: 22  QSAQLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPDLRRKMLLATLWNTGA 81

Query: 169 RISEAL-------SLTPQNIMDDQSTL------------RIQGKGDKIRIVPLLPSVRKA 209
           RI+EAL       SLTP       +TL            R+       R+VPL  S   +
Sbjct: 82  RINEALALTRGDFSLTPPYPFVQLATLKQRTEKAARTAGRMPAGQQTHRLVPLSDSWYVS 141

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG------------ 255
            L+        +   +++P+ R  +  G+     +++   R +R ++G            
Sbjct: 142 QLQ-------TMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTWIGEAVAAAAADGVT 194

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 195 FSVPITPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240


>gi|310829293|ref|YP_003961650.1| hypothetical protein ELI_3731 [Eubacterium limosum KIST612]
 gi|308741027|gb|ADO38687.1| hypothetical protein ELI_3731 [Eubacterium limosum KIST612]
          Length = 304

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 24/157 (15%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-----------GKGDKI----------R 198
           + L    GLR+ E L L  ++I  + + L ++           GK   +          R
Sbjct: 128 ILLAMSTGLRLGEVLGLRLKDIDFETNVLHVRRNRQRVCNPKTGKHSVVLQSPKTRASRR 187

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            +P+   ++ A++ Y D    +   + + PL     G+  +    QR   Q++ ++GL  
Sbjct: 188 DIPIHTELKAALIRYLDTQGKN---DPKRPLIAAPSGRAYDARTLQRRFDQIKAHMGLNP 244

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             T H+LRHSF T  L  G D+R++   LGH  ++ T
Sbjct: 245 RITFHSLRHSFVTRALELGADMRAVSGFLGHSSIAFT 281


>gi|223587856|emb|CAX36643.1| integron intagrase IntI protein [Arthrobacter sp. JEK-2009]
          Length = 113

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 36/57 (63%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT  Y
Sbjct: 57  TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTIDY 113


>gi|195939942|ref|ZP_03085324.1| putative integrase [Escherichia coli O157:H7 str. EC4024]
          Length = 291

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 21/134 (15%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G R SEA  L    ++  + T  ++ KG K R VP+ P                  L   
Sbjct: 160 GARWSEAEGLKQSQVLPGRITF-VKTKGKKNRTVPISP-----------------QLQAM 201

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           LP  RG    P     F   I+  R  + LP     H LRH+FA+H +  GG++  +Q I
Sbjct: 202 LPKKRGALFSPCYE-AFDAAIK--RAKIELPDGQLTHVLRHTFASHFMMRGGNILVLQKI 258

Query: 287 LGHFRLSTTQIYTN 300
           LGH  +  T  Y +
Sbjct: 259 LGHSDIKMTMRYAH 272


>gi|315608606|ref|ZP_07883589.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
 gi|315249709|gb|EFU29715.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
          Length = 410

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 101/223 (45%), Gaps = 22/223 (9%)

Query: 94  GIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
            I+ F  +L +R +T+   S +L   N  +   LP   +  +   +  ++      ++  
Sbjct: 174 AIRQFCSFLYERGMTSTNLSYVLTRSNFPQHEKLPSVYSCDEIKQIEGSI-----EQSSA 228

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210
           +  R+ AI  L    GLR+S+  SLT  NI  D   + + Q K      +PLL  + +A+
Sbjct: 229 VGKRDYAIFLLASRLGLRVSDIASLTWDNIDWDNGKITLYQYKTKAPMELPLLREIGEAL 288

Query: 211 LEYY-DLCPF----DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST---TA 262
           + Y  D  P     ++ L    P +R +    LN GV  R ++      G+ +S+     
Sbjct: 289 VTYARDSRPKSHLKEVFLTASAP-YRPMTRISLN-GVITRIMQSS----GIDISSRRFGP 342

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           H++RHS A+++L  G  L  I  ILGH    TT  Y  V+  N
Sbjct: 343 HSMRHSLASNMLRQGTSLPVISGILGHESTQTTMEYLRVDIVN 385


>gi|182627230|ref|ZP_02954933.1| tyrosine recombinase XerD [Clostridium perfringens D str. JGS1721]
 gi|177907367|gb|EDT70067.1| tyrosine recombinase XerD [Clostridium perfringens D str. JGS1721]
          Length = 280

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 134/290 (46%), Gaps = 42/290 (14%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N     E +RGL+  T + YE + + FL F+   T+++++     +L   EI+  + K +
Sbjct: 7   NEFIRYEFDRGLTLETTKRYEREIKYFLKFIKIKTDKELS-----ELLEDEIKMCLKKYK 61

Query: 80  T----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                +K    ++   +  I  FL++ +   I  +   +    ++K   +   L+E + L
Sbjct: 62  MTLEKEKYKPSTINGKIIIINKFLRFCE---IEVKEKCVK---IQKKPYITNVLSESEYL 115

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+ NV           + R+  I+ +L   GLR+SE LSL  + I +    ++I+GKG 
Sbjct: 116 RLL-NV---------CDNFRDKVIIRVLANTGLRVSELLSLEIREIYN--GDIQIKGKGA 163

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG----KPLNPGVFQRYIRQ-- 249
           K R       + K I +Y +    + +   +  +F G +G    + +N  +F +Y ++  
Sbjct: 164 KYRECFCSSEIIKLIKQYIETERLETD---KSKVFTGRKGALKRQAINKMLF-KYAKKAH 219

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           +++    P     H+LRH F  +L      L  I++ +GH  + TT IYT
Sbjct: 220 IKKEKAHP-----HSLRHLFGKNLAERRVSLDVIKTFMGHEDIRTTAIYT 264


>gi|332086087|gb|EGI91249.1| integrase [Shigella boydii 5216-82]
          Length = 312

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 32/46 (69%)

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +P     H LRH+FA+H + NGG++ ++Q ILGH ++ TT IY ++
Sbjct: 250 IPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295


>gi|325280655|ref|YP_004253197.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
 gi|324312464|gb|ADY33017.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
          Length = 405

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 15/150 (10%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQS----TLRIQGKGDKIRIVPLLPSVRKAILE 212
              ++ +Y  GL   +  +L P++I +D +     ++ + K + +  +PLL S+ K ILE
Sbjct: 248 DVFIFCVYT-GLAFIDVYNLHPEHISEDGNGNLWIVKPREKTNNLCNIPLL-SIPKQILE 305

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
            Y   P+ ++    LP+       P N  +   Y++++    G+  + T HT RHSFA+ 
Sbjct: 306 KYKDNPYCMDKGTLLPV-------PCNQKM-NSYLKEIADLCGIKKNLTTHTARHSFASV 357

Query: 273 L-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + L+N   L ++  +LGH     TQ Y  V
Sbjct: 358 IALANNVSLPNVAKMLGHSSTRMTQHYAKV 387


>gi|298388102|ref|ZP_06997647.1| integrase [Bacteroides sp. 1_1_14]
 gi|298259132|gb|EFI02011.1| integrase [Bacteroides sp. 1_1_14]
          Length = 382

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 81/170 (47%), Gaps = 17/170 (10%)

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI 199
           ++L      K ++      ++ ++  GL  S+   L+P++++ D++  L I+    K +I
Sbjct: 208 IILAKEFTIKRVEQVRDVFVFCIFT-GLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKI 266

Query: 200 ---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
              +P+LP     + +Y D+      L   LP+    R           Y++++    G+
Sbjct: 267 MCNIPVLPVAASILDKYKDVAECTGKL---LPVLCNQR--------MNSYLKEIADVCGI 315

Query: 257 PLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             + + HT RHS+AT + L+NG  + ++  +LGH   + T+ Y  V  +N
Sbjct: 316 HKNLSTHTARHSYATSICLANGVSMENVAKMLGHADTNVTKHYARVLDQN 365


>gi|160888483|ref|ZP_02069486.1| hypothetical protein BACUNI_00900 [Bacteroides uniformis ATCC 8492]
 gi|298374441|ref|ZP_06984399.1| integrase [Bacteroides sp. 3_1_19]
 gi|156862160|gb|EDO55591.1| hypothetical protein BACUNI_00900 [Bacteroides uniformis ATCC 8492]
 gi|298268809|gb|EFI10464.1| integrase [Bacteroides sp. 3_1_19]
          Length = 409

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 137/318 (43%), Gaps = 42/318 (13%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
            +GN   ++   +LL +R N      +    +  T+ +Y    R    F+   TE K++ 
Sbjct: 100 FQGNAGMQMTLLKLL-DRHNEEMKTRVGVDRAPTTMSTYVYTRRTLAEFIK--TEFKVSD 156

Query: 61  QTIRQLSYTEIRAF----ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
               QL+   IR +    + K+R   +   +++  LS +K   +   K   + + +  + 
Sbjct: 157 LAFGQLNEQFIRDYQDFCLEKKR---LAMETVRHYLSILKKICRIAYKEGHSEKYHFCHF 213

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL---YLLYGC--GLRIS 171
           +  K+  + P+AL+ +    L D          +  + R S ++     L+ C  G   +
Sbjct: 214 KLPKQKETTPKALSRENFEKLRD---------LEIPEKRRSHVITRDLFLFACYTGTAYA 264

Query: 172 EALSLTPQNIM-DDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           +A+S+T +N+  DD+ +L ++    K D +  V LLP     I +Y D        + + 
Sbjct: 265 DAVSITRENLFRDDEGSLWLKYRRKKTDYLGRVKLLPEALALIEKYRD--------DTRT 316

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSI 286
            LF      P +    +  ++ LR   GL      H  RHSFA+ + L  G  + +I  +
Sbjct: 317 TLF-----PPQDYHTLRANMKSLRLMAGLSQDLVYHMGRHSFASLVTLEEGVPIETISKM 371

Query: 287 LGHFRLSTTQIYTNVNSK 304
           LGH  + TTQIY  V  K
Sbjct: 372 LGHSNIKTTQIYARVTPK 389


>gi|229579624|ref|YP_002838023.1| integrase family protein [Sulfolobus islandicus Y.G.57.14]
 gi|228010339|gb|ACP46101.1| integrase family protein [Sulfolobus islandicus Y.G.57.14]
          Length = 291

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 113/234 (48%), Gaps = 48/234 (20%)

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + KRR + +   +++  +  ++ FLK+L    ++ +  I  +R  +      +AL+E Q 
Sbjct: 77  VEKRRAKSV---TIRYYIIAVRRFLKWLN---VSVKPPIPKVRGKE-----VKALDESQI 125

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-K 193
                  +L+T   TK     +  I+ LL   GLR +E LS+  +++  + + +R++  K
Sbjct: 126 -----QKVLNTCKRTK-----DKLIIRLLLDTGLRANELLSVLVKDVDLENNMIRVRNTK 175

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ----RYIRQ 249
             + R+V      ++ + +Y                   ++GK L+  +F        R+
Sbjct: 176 NGEERVVFFTDETKQLLRKY-------------------MKGKKLDEKLFDITYDALYRK 216

Query: 250 LRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           L+R LG  + +    H LRH+FAT  L  G ++ ++Q +LGH  + TTQIYT++
Sbjct: 217 LKR-LGNKVEIELRPHILRHTFATLSLKRGINVITLQKLLGHKDIKTTQIYTHL 269


>gi|302387143|ref|YP_003822965.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302197771|gb|ADL05342.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 407

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 34/169 (20%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI-VPLLPSVRKAILEY 213
           R+ A+++L+   GLR S+ L+L  +NI   +S +    +   I + +P++  +  AI++Y
Sbjct: 240 RDYALIFLVTQLGLRTSDVLNLKLENINWSESRIEFVQQKTGISVNLPIVEDLGMAIIDY 299

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR----------YL---GLPLST 260
                            +  R K   P +F ++I+   R          YL   G+PL T
Sbjct: 300 ----------------LKYGRPKSNEPYLFLKHIQPFDRMKNGHYLITQYLVKAGIPLKT 343

Query: 261 TAH----TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             H    +LRH+ A+ LL     L  I SILGH  + +T+ Y +++ +N
Sbjct: 344 AKHHGLHSLRHTLASRLLEQDVPLEIISSILGHTTVESTKPYLHIDIEN 392


>gi|228997247|ref|ZP_04156871.1| Tn554-related, transposase A [Bacillus mycoides Rock3-17]
 gi|228762521|gb|EEM11444.1| Tn554-related, transposase A [Bacillus mycoides Rock3-17]
          Length = 372

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 95/215 (44%), Gaps = 31/215 (14%)

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
           K FL ++ K K +   N+L ++  +K   +      +Q  T   N+             R
Sbjct: 145 KGFLHHINKNKPSIR-NVLKVKEPRKRIQILTKEQVRQTFTATTNI-------------R 190

Query: 156 NSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQGK-------GDKIRIVPLLPSVR 207
           ++ ++ LL+  GLRI EALSL  ++ I D Q   RI+ +       G K++       V 
Sbjct: 191 DAFLIQLLFETGLRIGEALSLYLEDFIFDYQKGHRIRLRDRGELENGAKLKTGEREIFVS 250

Query: 208 KAILEYYD------LCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLST 260
           + +++ YD      +   D+  N      RG   G+P+N        ++LR+   + +  
Sbjct: 251 QHLMDLYDDYLYEIIDGLDIETNFVFIKLRGRNMGRPMNYSDVGSLFKRLRKKTKIDIH- 309

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             H LRH+ AT       D++ +Q  LGH ++ TT
Sbjct: 310 -PHLLRHTHATIYYQETKDIKQVQERLGHAQIQTT 343


>gi|332090863|gb|EGI95955.1| integrase [Shigella boydii 5216-82]
          Length = 323

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 32/46 (69%)

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +P     H LRH+FA+H + NGG++ ++Q ILGH ++ TT IY ++
Sbjct: 263 IPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 308


>gi|302867667|ref|YP_003836304.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
 gi|302570526|gb|ADL46728.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
          Length = 353

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 9/142 (6%)

Query: 171 SEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD---LCPFDLNLNI 225
           SE L+L   ++   D +  + + GKG + R VP+   V + +  Y D   L     ++  
Sbjct: 189 SELLALRVSSVAGRDGERRVDVAGKGGRPRTVPIEDGVDRVLAGYLDSRRLRFGSRSVRP 248

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL----PLSTTAHTLRHSFATHLLSNGGDLR 281
             P     +G+ L  G  Q  +    R  G+    P     H LRH+FAT L  +G    
Sbjct: 249 DAPFLVDRQGEALRRGGLQYLVESCYRRSGIGDRVPRGARLHALRHTFATRLAEDGASAA 308

Query: 282 SIQSILGHFRLSTTQIYTNVNS 303
            I  +LGH  L+++Q Y  V +
Sbjct: 309 EIMRLLGHASLASSQTYIEVTA 330


>gi|320652975|gb|EFX21175.1| putative integrase [Escherichia coli O55:H7 str. 3256-97 TW 07815]
          Length = 309

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 32/46 (69%)

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +P     H LRH+FA+H + NGG++ ++Q ILGH ++ TT IY ++
Sbjct: 250 VPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295


>gi|209919029|ref|YP_002293113.1| phage integrase [Escherichia coli SE11]
 gi|209912288|dbj|BAG77362.1| phage integrase [Escherichia coli SE11]
          Length = 325

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 5/78 (6%)

Query: 229 LFRGIR---GKPLNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSI 283
           LF  I+   GK + P +    +R + + +   +P     H LRH+FA+H + NGG++ ++
Sbjct: 231 LFEKIKKRGGKLVFPTLDYSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTL 290

Query: 284 QSILGHFRLSTTQIYTNV 301
           Q ILGH ++ TT IY ++
Sbjct: 291 QKILGHAKIQTTMIYAHL 308


>gi|323483758|ref|ZP_08089138.1| phage integrase family Integrase/recombinase [Clostridium symbiosum
           WAL-14163]
 gi|323402949|gb|EGA95267.1| phage integrase family Integrase/recombinase [Clostridium symbiosum
           WAL-14163]
          Length = 289

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 125/300 (41%), Gaps = 36/300 (12%)

Query: 2   EGNNLP-EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           +G N P E+ S   + E QN+L   E  R     T+  Y  D + F  FL     +K  +
Sbjct: 3   QGQNKPDELFSCTRIAEFQNYLHQEERSRN----TITKYIRDLKVFFTFLDGQPMDKEAL 58

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
              +            K  TQ     S+   L+ +  FL +L       E   L ++ LK
Sbjct: 59  LDWK------------KHLTQTHAPASVNSMLASVNKFLDWL-------ELPGLKVKPLK 99

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               +    N K+ LT  +   L  + E++  + R S +L  +   G+R+SE   +T ++
Sbjct: 100 IQRQI--FSNPKKELTAEEYRRLIKAAESRQ-NNRLSLLLQTICSTGIRVSELKFITAES 156

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
               ++    +GK    RI+ L P + +A+  Y      D  +     +F    G PL+ 
Sbjct: 157 AKTGRAEADCKGK---TRIIFLPPDLCRALRHYCRERGIDAGI-----IFCTKNGCPLDR 208

Query: 241 GVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               + ++ L    G+ P     H LRH FA    +   DL  +  +LGH  +STT+IYT
Sbjct: 209 SNIWKDMKMLCDSAGVEPGKVFPHNLRHLFARTYYALEKDLSRLADLLGHSNVSTTRIYT 268


>gi|323187008|gb|EFZ72325.1| integrase [Escherichia coli RN587/1]
          Length = 312

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 32/46 (69%)

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +P     H LRH+FA+H + NGG++ ++Q ILGH ++ TT IY ++
Sbjct: 250 VPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295


>gi|315505932|ref|YP_004084819.1| integrase family protein [Micromonospora sp. L5]
 gi|315412551|gb|ADU10668.1| integrase family protein [Micromonospora sp. L5]
          Length = 353

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 9/142 (6%)

Query: 171 SEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD---LCPFDLNLNI 225
           SE L+L   ++   D +  + + GKG + R VP+   V + +  Y D   L     ++  
Sbjct: 189 SELLALRVSSVAGRDGERRVDVAGKGGRPRTVPIEDGVDRVLAGYLDSRRLRFGSRSVRP 248

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL----PLSTTAHTLRHSFATHLLSNGGDLR 281
             P     +G+ L  G  Q  +    R  G+    P     H LRH+FAT L  +G    
Sbjct: 249 DSPFLVDRQGEALRRGGLQYLVESCYRRAGIGDRVPRGARLHALRHTFATRLAEDGASAA 308

Query: 282 SIQSILGHFRLSTTQIYTNVNS 303
            I  +LGH  L+++Q Y  V +
Sbjct: 309 EIMRLLGHASLASSQTYIEVTA 330


>gi|215408000|emb|CAS02327.1| integron integrase [uncultured bacterium]
          Length = 154

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 35/56 (62%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
            FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  + TT I
Sbjct: 99  TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVPTTMI 154


>gi|83404838|ref|YP_424852.1| putative resolvase [Escherichia coli]
 gi|83308563|emb|CAI79535.1| putative resolvase [Escherichia coli]
          Length = 228

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 40/182 (21%)

Query: 153 DARNSAILYLLYGCGLRISEAL-------SLTPQNIMDDQSTL------------RIQGK 193
           D R   +L  L+  G RI+EAL       SLTP       + L            R   +
Sbjct: 26  DLRRKMLLATLWNTGARINEALVLMRGDFSLTPPYPFVQLAPLKQRTEKAARTAGRTPAR 85

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR 251
               R+VPL  S   + L+        +   +++P+ R  +  G+     +++   R +R
Sbjct: 86  QQTHRLVPLSDSWYVSQLQ-------TMVATLKIPMERRNKRTGRTEKVRIWEVTDRTVR 138

Query: 252 RYLGLPLSTTA------------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            ++G  ++T A            HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT
Sbjct: 139 TWIGEAVATAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYT 198

Query: 300 NV 301
            V
Sbjct: 199 KV 200


>gi|323169298|gb|EFZ54974.1| integrase [Shigella sonnei 53G]
          Length = 312

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 5/78 (6%)

Query: 229 LFRGIR---GKPLNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSI 283
           LF  I+   GK + P +    +R + + +   +P     H LRH+FA+H + NGG++ ++
Sbjct: 218 LFEKIKKRGGKLVFPTLDYSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTL 277

Query: 284 QSILGHFRLSTTQIYTNV 301
           Q ILGH ++ TT IY ++
Sbjct: 278 QKILGHAKIQTTMIYAHL 295


>gi|160892657|ref|ZP_02073447.1| hypothetical protein CLOL250_00187 [Clostridium sp. L2-50]
 gi|156865698|gb|EDO59129.1| hypothetical protein CLOL250_00187 [Clostridium sp. L2-50]
          Length = 351

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 125/295 (42%), Gaps = 29/295 (9%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEE-------KITIQTIRQLSYTEIRAFISK-R 78
           IE   S  T   Y  D + F  FL     +        IT++ I  L   +I  ++   +
Sbjct: 35  IENRTSSRTRLGYARDIKTFYNFLCSECPQFRGRKPIDITLEDISALEAEDIEEYLEYLK 94

Query: 79  RTQKIG------DRSLKRSLSGIKSFLKYLKK--RKITTESNILNMRNLKKSNSLPRALN 130
             +K G      +R++KR LS ++ F  YL K  R  +  +  ++M  +          N
Sbjct: 95  YYEKDGKVYTNAERAIKRKLSALRVFYAYLYKNDRIKSNPAEKVDMPKIHGKTITRLDTN 154

Query: 131 EK----QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           E      A+   D++  H          R+ AIL L+ G G+R+SE + +  +++  + S
Sbjct: 155 EVADFLDAVEYGDHLTKHQQAYHAKTKVRDLAILTLMLGTGIRVSECVGIDLKDVDFNNS 214

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLNPGV 242
            +++  KG     V     V  A+ +Y +    + P     N    LF   + K ++   
Sbjct: 215 RVKVTRKGGYESYVYFGDEVTDALTDYLEERKHIEPVSGYEN---ALFLSSQKKRMSVRS 271

Query: 243 FQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            +  +++    + +PL   T H LR ++ T L    GD+  +  +LGH  ++TT+
Sbjct: 272 VEMLVKKYSEGV-IPLKHITPHKLRSTYGTELYRETGDIYLVADVLGHSDVNTTR 325


>gi|254303856|ref|ZP_04971214.1| site-specific recombinase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148324048|gb|EDK89298.1| site-specific recombinase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 328

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 133/294 (45%), Gaps = 38/294 (12%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTI----RQLSYTEIRAFISKRRTQKIGDRS 87
           S+ T++ Y    + FL F+ +  E   +I  +    + +   ++ A+I         DR 
Sbjct: 33  SEKTVKDYMFHLKDFLHFV-YEGENDFSISEVIPLMQDIEKEDVEAYI----VHLFEDRK 87

Query: 88  LKRS-----LSGIKSFLKYLKKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLV 138
           LK++     LS +KS  K L+   +      + +    RN++  N L  ++++ + +   
Sbjct: 88  LKKTSVNTILSALKSLYKELESNGLKNPVKYIKLFKVNRNIE--NVLKVSIDDIRKII-- 143

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLR-IQGKGD 195
              L     E K+   RN  ILY L+  G+R  E L+L  ++ +  +D+   + ++ K  
Sbjct: 144 --GLYKIDSEKKY---RNITILYTLFYTGMRSKELLTLQFKHYLKREDEYFFKLVETKSG 198

Query: 196 KIRIVPLLPSVRKAILEY--YDLCPFDLNLNI--QLPLFRG--IRGKPLNPGVFQRYIRQ 249
           K    P+  S+ K + EY  Y +  + L++    +  +F    +   PL+       I+ 
Sbjct: 199 KDVYKPIHKSLVKKLEEYKKYLMSMYSLDIKDLDEHYIFSTSILDNSPLSYRSLNAIIQD 258

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           + + +G  +S   H +RH+ AT L  +G D+  I+  LGH     T++Y N  S
Sbjct: 259 MGKLIGKDIS--PHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARS 310


>gi|193065311|ref|ZP_03046383.1| integrase [Escherichia coli E22]
 gi|213615968|ref|ZP_03371794.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
 gi|192927105|gb|EDV81727.1| integrase [Escherichia coli E22]
          Length = 312

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 5/78 (6%)

Query: 229 LFRGIR---GKPLNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSI 283
           LF  I+   GK + P +    +R + + +   +P     H LRH+FA+H + NGG++ ++
Sbjct: 218 LFEKIKKRGGKLVFPTLDYSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTL 277

Query: 284 QSILGHFRLSTTQIYTNV 301
           Q ILGH ++ TT IY ++
Sbjct: 278 QKILGHAKIQTTMIYAHL 295


>gi|300693953|ref|YP_003749926.1| integrase/recombinase protein [Ralstonia solanacearum PSI07]
 gi|299075990|emb|CBJ35301.1| putative integrase/recombinase protein [Ralstonia solanacearum
           PSI07]
          Length = 566

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 118/302 (39%), Gaps = 40/302 (13%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           IERG  LS LT +    D   +  FL   T  +  +   R  +  E R F     T  + 
Sbjct: 256 IERGRPLSSLTTE----DAIAYRGFLRRPTPHERWVGPARPRASVEWRPF-----TNGLS 306

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSL--PRALNEKQ---ALTL 137
            RS+  SLS + +  ++L +++    +    + +R   ++ +L    A  E +   A T+
Sbjct: 307 ARSIAYSLSVLGAMFRWLIQQRYVLANPFAGIKVRGGGRTAALDASHAFTEGEWALARTI 366

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKG 194
            D +      E      R   +L   Y  GLR SE ++     I  D+     L + GKG
Sbjct: 367 ADGLEWSYGWEAP-AAQRLRFVLDFAYATGLRASELIAAKLGGIETDRQGDHWLNLIGKG 425

Query: 195 DKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            +   V L P  R A+  Y     L       N Q PL   +   P       R    +R
Sbjct: 426 SRAGKVALPPLARTALDRYLVERGLPVTRARWNPQAPLIGALGLDPDGGITGSRLWSVVR 485

Query: 252 RYLGLPLS---------------TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           R+                      + H +RH+ A+H L+ G +L +++  L H  +STT 
Sbjct: 486 RFFWTAADIIEGDHAVLADKLRKASPHWMRHTHASHALARGAELTTVRDNLRHASISTTS 545

Query: 297 IY 298
           IY
Sbjct: 546 IY 547


>gi|265751257|ref|ZP_06087320.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263238153|gb|EEZ23603.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 409

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 137/318 (43%), Gaps = 42/318 (13%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
            +GN   ++   +LL +R N      +    +  T+ +Y    R    F+   TE K++ 
Sbjct: 100 FQGNAGMQMTLLKLL-DRHNEEMKARVGVDRAPTTMSTYVYTRRTLAEFIK--TEFKVSD 156

Query: 61  QTIRQLSYTEIRAF----ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
               QL+   IR +    + K+R   +   +++  LS +K   +   K   + + +  + 
Sbjct: 157 LAFGQLNEQFIRDYQDFCLEKKR---LAMETVRHYLSILKKICRIAYKEGHSEKYHFCHF 213

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL---YLLYGC--GLRIS 171
           +  K+  + P+AL+ +    L D          +  + R S ++     L+ C  G   +
Sbjct: 214 KLPKQKETTPKALSRENFEKLRD---------LEIPEKRRSHVITRDLFLFACYTGTAYA 264

Query: 172 EALSLTPQNIM-DDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           +A+S+T +N+  DD+ +L ++    K D +  V LLP     I +Y D        + + 
Sbjct: 265 DAVSITRENLFWDDEGSLWLKYRRKKTDYLGRVKLLPEALALIEKYRD--------DTRA 316

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSI 286
            LF      P +    +  ++ LR   GL      H  RHSFA+ + L  G  + +I  +
Sbjct: 317 TLF-----PPQDYHTLRANMKSLRLMAGLSQDLVYHMGRHSFASLVTLEEGVPIETISKM 371

Query: 287 LGHFRLSTTQIYTNVNSK 304
           LGH  + TTQ+Y  V  K
Sbjct: 372 LGHSNIKTTQVYARVTPK 389


>gi|224538580|ref|ZP_03679119.1| hypothetical protein BACCELL_03474 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519804|gb|EEF88909.1| hypothetical protein BACCELL_03474 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 397

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 74/148 (50%), Gaps = 16/148 (10%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGK---GDKIRIVPLLPSVRKAILEY 213
           A L+  Y  G+R S+ +++ P+NI++  Q T  I      G ++R+   L    K I   
Sbjct: 240 AFLFCCYA-GMRYSDFVNMKPENIVEMHQETWLIYKSIKTGTEVRLPLYLLFNGKGI--- 295

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
             L  +  NL      F  +R    N  V +  I  + R  GL    + HT RH+ AT L
Sbjct: 296 QILNKYQANLQD----FFHLRD---NSNVNKELII-ITRLAGLSKKVSFHTARHTNATLL 347

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + NG ++ ++Q +LGH  + TTQIYTNV
Sbjct: 348 IYNGVNITTVQKLLGHKSVKTTQIYTNV 375


>gi|167009963|ref|ZP_02274894.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica FSC200]
          Length = 75

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 41/62 (66%), Gaps = 4/62 (6%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           H LRHSFA+H+L +  DL +++ +LGH  +S+TQI T++N +     +  ++D+ HP   
Sbjct: 18  HILRHSFASHVLDSFKDLLAVKDLLGHADISSTQICTHLNFQQ----LASVFDKAHPRAK 73

Query: 323 QK 324
           +K
Sbjct: 74  KK 75


>gi|293410219|ref|ZP_06653795.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291470687|gb|EFF13171.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 333

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 71/169 (42%), Gaps = 25/169 (14%)

Query: 134 ALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           A   VD +  LL +  E++  D     ++ +    G R SEA  L    ++  + T  ++
Sbjct: 169 AFLYVDEIERLLISCDESRNKDL--GVVVRIGLATGARWSEAEGLKQSQVLPCRITF-VK 225

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            KG K R VP+ P                  L   LP  RG    P     F   I+  R
Sbjct: 226 TKGKKNRTVPISP-----------------QLQAMLPKKRGALFSPCYE-AFDAAIK--R 265

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             + LP     H LRH+FA+H +  GG++  +Q ILGH  +  T  Y +
Sbjct: 266 AKIELPDGQLTHVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAH 314


>gi|323186140|gb|EFZ71495.1| integrase [Escherichia coli 1357]
          Length = 374

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 19/140 (13%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           +L   G R  E  +L  + ++  + T   + K  K R VP+  S+ + I +      F  
Sbjct: 238 ILLSTGARWGEVAALEQRRVLHCRITFS-KTKNSKNRTVPISESLFEKIKKRGGKLVFP- 295

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
              +  PL R +  K + P V              P     H LRH+FA+H + NGG++ 
Sbjct: 296 --TLDYPLVRDVI-KTVAPDV--------------PDGQAVHALRHTFASHFMMNGGNIL 338

Query: 282 SIQSILGHFRLSTTQIYTNV 301
           ++Q ILGH ++ TT IY ++
Sbjct: 339 TLQKILGHAKIQTTMIYAHL 358


>gi|307565509|ref|ZP_07627991.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345778|gb|EFN91133.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 407

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 14/159 (8%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            ++ C  GL   +  +LTP NI  +DD+  +  + +   +    LL  + K I+  Y   
Sbjct: 249 FIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPKNIIAKYSHK 308

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            +         LF  +  +  N      Y++++    G+  + T H  RH+FAT  LS G
Sbjct: 309 TYR-----DGKLFPILTNQKTNA-----YLKEIADICGIKKNLTFHLARHTFATMSLSKG 358

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + S+  +LGH  + TTQ+Y  + +K     M ++ D+
Sbjct: 359 VPMESVSKMLGHTNIKTTQLYARITNKKVEHDMEQLADK 397


>gi|288927180|ref|ZP_06421060.1| integrase/recombinase y4rA [Prevotella buccae D17]
 gi|288336049|gb|EFC74450.1| integrase/recombinase y4rA [Prevotella buccae D17]
          Length = 426

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 101/223 (45%), Gaps = 22/223 (9%)

Query: 94  GIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
            I+ F  +L +R +T+   S +L   N  +   LP   +  +   +  ++      ++  
Sbjct: 190 AIRQFCSFLYERGMTSTNLSYVLTRSNFPQHEKLPSVYSCDEIKQIEGSI-----EQSSA 244

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210
           +  R+ AI  L    GLR+S+  SLT  NI  D   + + Q K      +PLL  + +A+
Sbjct: 245 VGKRDYAIFLLASRLGLRVSDIASLTWDNIDWDNGKITLYQYKTKAPMELPLLREIGEAL 304

Query: 211 LEYY-DLCPF----DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST---TA 262
           + Y  D  P     ++ L    P +R +    LN GV  R ++      G+ +S+     
Sbjct: 305 VTYARDSRPKSHLKEVFLTASAP-YRPMTRISLN-GVITRIMQSS----GIDISSRRFGP 358

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           H++RHS A+++L  G  L  I  ILGH    TT  Y  V+  N
Sbjct: 359 HSMRHSLASNMLRQGTSLPVISGILGHESTQTTMEYLRVDIVN 401


>gi|260769153|ref|ZP_05878086.1| hypothetical bacteriophage integrase [Vibrio furnissii CIP 102972]
 gi|260614491|gb|EEX39677.1| hypothetical bacteriophage integrase [Vibrio furnissii CIP 102972]
          Length = 322

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 20/142 (14%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +  L    G R  EA  L    +   + T  +  K  K R VP+                
Sbjct: 183 VAKLCLATGARWGEAEELKGSTVSHGKVTF-LDTKNGKDRTVPI---------------- 225

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
              +  +Q  +  G  G+       + Y++  +    LP    AH LRH+FA+H + NGG
Sbjct: 226 ---SQELQDEIVTGKSGRLFKDCYAEFYVQLKQCNFDLPKGQAAHVLRHTFASHFMMNGG 282

Query: 279 DLRSIQSILGHFRLSTTQIYTN 300
           ++ ++Q ILGH  +  T  Y +
Sbjct: 283 NILTLQKILGHATIQQTMTYAH 304


>gi|226366650|ref|YP_002784433.1| tyrosine recombinase [Rhodococcus opacus B4]
 gi|226245140|dbj|BAH55488.1| putative tyrosine recombinase [Rhodococcus opacus B4]
          Length = 209

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 79/181 (43%), Gaps = 16/181 (8%)

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQST 187
           L   Q   L+D +       T W   R+ A+  L    GLR+SE +SLT  ++ +   + 
Sbjct: 4   LTATQVKALLDGI-----DTTTWTGRRDQAMFTLAAHTGLRVSELISLTVDSVHLGTAAH 58

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQRY 246
           +   GKG K R  PL  +    +  Y      + + +    LF   RG+PL+   + QR 
Sbjct: 59  VACTGKGRKHRATPLTTATAALLKTYL----HERHTHPGHALFPNPRGEPLSVDAIGQRL 114

Query: 247 IRQLRRYL-GLP----LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              +RR     P       T HTLRH+ A   L+ G D   I   LGH   +TT IY + 
Sbjct: 115 RTHVRRAARACPELAGTHVTVHTLRHTAAMRFLAAGIDTAVIALWLGHESTATTSIYLHA 174

Query: 302 N 302
           +
Sbjct: 175 D 175


>gi|189465362|ref|ZP_03014147.1| hypothetical protein BACINT_01711 [Bacteroides intestinalis DSM
           17393]
 gi|189437636|gb|EDV06621.1| hypothetical protein BACINT_01711 [Bacteroides intestinalis DSM
           17393]
          Length = 407

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 16/151 (10%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYY 214
           A ++ LY CGLR  +   LT +N+      L+ +    KG       ++P +   +L   
Sbjct: 255 AFIFCLY-CGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIP-LNDGLLSII 312

Query: 215 DLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
              P D N L   LP +              + +++  +  G+    + H  RHSFA ++
Sbjct: 313 GEAPADKNCLIFDLPTYESC----------CKSVKRWVKRAGIDKHISWHCARHSFAVNI 362

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           L+NG +++++ S+LGH  L  T+ YT    K
Sbjct: 363 LNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|170757613|ref|YP_001781774.1| phage integrase family site specific recombinase [Clostridium
           botulinum B1 str. Okra]
 gi|169122825|gb|ACA46661.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum B1 str. Okra]
          Length = 354

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 114/247 (46%), Gaps = 45/247 (18%)

Query: 81  QKIGDRSLKRSLSG--IKSFLKYLKK--RKITTESNILN---MRNLKKSNSLPRALNEKQ 133
           QKI D+  K  L+    + +LK L    +    E NI++    +N+K    +P    +K+
Sbjct: 115 QKIVDKVTKEGLNNNTTRYYLKRLNTLFKSAKEEYNIIDSMPTKNIKVGKPVP---TKKK 171

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           ALT  DN + +   + K  + +   + +L    G+R+ E L +T  N+    +T+ +  +
Sbjct: 172 ALT--DNEIKNLLEDFK--NNKYYLLNFLAVNTGMRLGELLGITWDNVDFKNNTITVNKQ 227

Query: 194 GDKI----------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK- 236
             KI                R +P+   V K ++ + ++    +N+N ++  FR      
Sbjct: 228 WKKIEKGVWGFGDVKSKNSNRTIPVSNIVIKELMNHRNV----ININNRVLNFRSTNSVC 283

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            +  G F+++            + T H LRH++AT L++NG D ++   ILGH    T +
Sbjct: 284 AIVNGKFKKH----------GYTITFHELRHTYATRLIANGVDFKTAAQILGHSVEQTLK 333

Query: 297 IYTNVNS 303
            Y++VN+
Sbjct: 334 TYSHVNN 340


>gi|86608861|ref|YP_477623.1| phage integrase family site specific recombinase [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557403|gb|ABD02360.1| site-specific recombinase, phage integrase family [Synechococcus
           sp. JA-2-3B'a(2-13)]
          Length = 330

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 71/160 (44%), Gaps = 23/160 (14%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAIL 211
           R +A++ L+  CGLR  E L LT Q+  I  + S L ++ GKG K R V +   + + + 
Sbjct: 160 RYAALIRLMLECGLRAQELLDLTVQDFQISPEGSLLEVRCGKGSKPRAVAVGDPLSELLQ 219

Query: 212 EYYD-----LCPFDLNLNIQLPLFR------GIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +Y         P D       PLF         RG+PL     +  + +L      P   
Sbjct: 220 QYLSRERGPCAPTD-------PLFVSQSRCLAYRGRPLTYDGLRHIVLKLTE--PEPGHQ 270

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           T H  RHSFAT LL  G     IQ +LGH   + T  YT 
Sbjct: 271 TPHQFRHSFATLLLDRGVAPEHIQHLLGHTTAAMTMRYTQ 310


>gi|194429499|ref|ZP_03062021.1| integrase [Escherichia coli B171]
 gi|194412463|gb|EDX28763.1| integrase [Escherichia coli B171]
 gi|195182858|dbj|BAG66428.1| predicted integrase [Escherichia coli O111:H-]
          Length = 312

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 32/46 (69%)

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +P     H LRH+FA+H + NGG++ ++Q ILGH ++ TT IY ++
Sbjct: 250 VPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295


>gi|237710114|ref|ZP_04540595.1| transposase [Bacteroides sp. 9_1_42FAA]
 gi|229455576|gb|EEO61297.1| transposase [Bacteroides sp. 9_1_42FAA]
          Length = 320

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 13/165 (7%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKG-DKIRIVPLLP--SVRKAILEYYDL 216
            ++ C  GL  S+   L  ++I++D + +R   KG  K +I+  +P   +   ILE Y  
Sbjct: 164 FVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQKTKIMCNIPLMEIPLKILEKYST 223

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
             +     +  P+   +  + +N      Y+++L    G+  + T H  RH+FAT  L+N
Sbjct: 224 NEYCKKHGVLFPV---LCNQKMNA-----YLKELADICGIKKTLTTHVGRHTFATFALAN 275

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           G  + S+  +LGH  +  T+ Y  V  +     M +I    H SI
Sbjct: 276 GVSIESVAKMLGHTNVQMTRHYARVLDRTVIREMSQIKMDFHISI 320


>gi|237727000|ref|ZP_04557481.1| integrase [Bacteroides sp. D4]
 gi|229433856|gb|EEO43933.1| integrase [Bacteroides dorei 5_1_36/D4]
          Length = 406

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 70/156 (44%), Gaps = 29/156 (18%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------GDKIRIVPLLPSVR 207
           A L+  Y  GLR S+   LTP+N       +RI GK          G +IR+ PL     
Sbjct: 236 AFLFCCY-TGLRYSDFCQLTPENF------IRINGKRWLYFKSVKTGVEIRL-PL----- 282

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             + E   L   D     + P    +   P N  V  R +R+L    G+    T H  RH
Sbjct: 283 HLLFESRALGSLD-----RYPDIGSLAALPCNSEV-NRQLRKLAGLCGIKKRITYHVSRH 336

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           + AT L+  G  + ++Q +LGH  + TTQIY+ + S
Sbjct: 337 TCATLLIHQGVAITTVQKLLGHTSVKTTQIYSEILS 372


>gi|218129372|ref|ZP_03458176.1| hypothetical protein BACEGG_00949 [Bacteroides eggerthii DSM 20697]
 gi|317475338|ref|ZP_07934603.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|217988442|gb|EEC54764.1| hypothetical protein BACEGG_00949 [Bacteroides eggerthii DSM 20697]
 gi|316908505|gb|EFV30194.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 409

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 137/318 (43%), Gaps = 42/318 (13%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
            +GN   ++   +LL +R N      +    +  T+ +Y    R    F+   TE K++ 
Sbjct: 100 FQGNAGMQMTLLKLL-DRHNEEMKARVGVDRAPTTMSTYVYTRRTLAEFIK--TEFKVSD 156

Query: 61  QTIRQLSYTEIRAF----ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
               QL+   IR +    + K+R   +   +++  LS +K   +   K   + + +  + 
Sbjct: 157 LAFGQLNEQFIRDYQDFCLEKKR---LAMETVRHYLSILKKICRIAYKEGHSEKYHFCHF 213

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL---YLLYGC--GLRIS 171
           +  K+  + P+AL+ +    L D          +  + R S ++     L+ C  G   +
Sbjct: 214 KLPKQKETTPKALSRENFEKLRD---------LEIPEKRRSHVITRDLFLFACYTGTAYA 264

Query: 172 EALSLTPQNIM-DDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           +A+S+T +N+  DD+ +L ++    K D +  V LLP     I +Y D        + + 
Sbjct: 265 DAVSITRENLFWDDEGSLWLKYRRKKTDYLGRVKLLPEALALIEKYRD--------DTRA 316

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSI 286
            LF      P +    +  ++ LR   GL      H  RHSFA+ + L  G  + +I  +
Sbjct: 317 TLF-----PPQDYHTLRANMKSLRLMAGLSQDLVYHMGRHSFASLVTLEEGVPIETISKM 371

Query: 287 LGHFRLSTTQIYTNVNSK 304
           LGH  + TTQ+Y  V  K
Sbjct: 372 LGHSNIKTTQVYARVTPK 389


>gi|299142888|ref|ZP_07036015.1| integrase [Prevotella oris C735]
 gi|298575617|gb|EFI47496.1| integrase [Prevotella oris C735]
          Length = 410

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 14/159 (8%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP--LLPSVRKAILEYYDLC 217
            ++ C  GL   +  +L P+NI+       I  K  K  +    LL  + K+I+  Y   
Sbjct: 249 FVFSCFTGLAYIDVYNLAPENIVTLNGKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSGK 308

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            +         LF  +  + LN      Y++++    G+  + T H  RH+FAT  LS G
Sbjct: 309 TYR-----DGKLFPMLTNQKLNS-----YLKEIADICGIKKNLTFHLARHTFATMSLSKG 358

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + S+  +LGH  + TTQIY  + +K     M E+ D+
Sbjct: 359 VPIESVSKMLGHTNIKTTQIYARITNKKIEHDMDELADK 397


>gi|170700906|ref|ZP_02891892.1| integrase family protein [Burkholderia ambifaria IOP40-10]
 gi|170134184|gb|EDT02526.1| integrase family protein [Burkholderia ambifaria IOP40-10]
          Length = 640

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 130/319 (40%), Gaps = 65/319 (20%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +ERG  LS LT +    D   +  F+   T  +  +  +R     + R F     +  + 
Sbjct: 320 VERGRALSSLTTE----DAVAYRAFIRRPTPHERWVGPVRPRGAPDWRPF-----SGGLS 370

Query: 85  DRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSL--PRALNEKQAL---TL 137
            RS   +LS + +  ++L +++  +      + +R+ + +N+L    A  E + L   T+
Sbjct: 371 ARSAAYTLSVLGALFRWLIEQRYLLANPFAGVKVRDTRGANALDTSHAFTEGEWLLVRTI 430

Query: 138 VDNVLLHT-----SHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDD---QS 186
            D +         +  + W  A    + ++L   Y  GLR SE +  T  +I  D    +
Sbjct: 431 ADGLEFRKDKPSGAPGSGWTPAAAQRLRFILDFGYATGLRASELVGATLGDIDTDAHGDA 490

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP------ 240
            L++ GKG K   V L P  R A+  Y         +  +LP+   +R +P  P      
Sbjct: 491 WLKVIGKGSKAARVALPPLARTALDRYL--------VARRLPVT-PVRWRPDTPLIPSLA 541

Query: 241 -------------GVFQRYIRQLRRYLGL--PL------STTAHTLRHSFATHLLSNGGD 279
                         V QR+  Q    +    P         + H +RH+ ATH L+ G +
Sbjct: 542 EDGAAAITSVRLWKVMQRFFAQTAALVDADNPALAQKLRQASPHWMRHTHATHALARGAE 601

Query: 280 LRSIQSILGHFRLSTTQIY 298
           L +++  L H  +STT IY
Sbjct: 602 LTTVRDNLRHASISTTSIY 620


>gi|226200966|ref|YP_002756570.1| resolvase [Escherichia coli]
 gi|260763809|ref|YP_003237848.1| putative resolvase ResA [Escherichia coli O26:H11 str. 11368]
 gi|284000234|ref|YP_003377921.1| resolvase [Escherichia coli O26:H-]
 gi|219881595|gb|ACL51965.1| resolvase [Escherichia coli]
 gi|257757234|dbj|BAI28735.1| putative resolvase ResA [Escherichia coli O26:H11 str. 11368]
 gi|283445174|gb|ADB20518.1| resolvase [Escherichia coli O26:H-]
 gi|323157093|gb|EFZ43219.1| resolvase [Escherichia coli EPECa14]
 gi|325699393|gb|ADZ45124.1| resolvase [Escherichia coli]
          Length = 260

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 40/182 (21%)

Query: 153 DARNSAILYLLYGCGLRISEAL-------SLTPQNIMDDQSTL--------RIQGK---G 194
           D R   +L  L+  G RI+EAL       SLTP       +TL        R  G+   G
Sbjct: 57  DLRRKMLLATLWNTGARINEALALTRGDFSLTPPYPFVQLATLKQRTEKAARTAGRTPAG 116

Query: 195 DKI-RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR 251
            +  R+VPL  S   + L+        +   +++P+ R  +  G+     +++   R +R
Sbjct: 117 QQTHRLVPLSDSWYVSQLQ-------TMVATLKIPMERRNKRTGRTEKARIWEVTDRTVR 169

Query: 252 RYLG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            ++G              +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT
Sbjct: 170 TWIGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYT 229

Query: 300 NV 301
            V
Sbjct: 230 KV 231


>gi|157149514|ref|YP_001451592.1| resolvase [Escherichia coli E24377A]
 gi|157076681|gb|ABV16390.1| resolvase [Escherichia coli E24377A]
          Length = 237

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 40/182 (21%)

Query: 153 DARNSAILYLLYGCGLRISEAL-------SLTPQNIMDDQSTL------------RIQGK 193
           D R   +L  L+  G RI+EAL       SLTP       + L            R   +
Sbjct: 35  DLRRKMLLATLWNTGARINEALVLMRGDFSLTPPYPFVQLAPLKQRTEKAARTAGRTPAR 94

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR 251
               R+VPL  S   + L+        +   +++P+ R  +  G+     +++   R +R
Sbjct: 95  QQTHRLVPLSDSWYVSQLQ-------TMVATLKIPMERRNKRTGRTEKVRIWEVTDRTVR 147

Query: 252 RYLGLPLSTTA------------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            ++G  ++T A            HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT
Sbjct: 148 TWIGEAVATAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYT 207

Query: 300 NV 301
            V
Sbjct: 208 KV 209


>gi|148544102|ref|YP_001271472.1| phage integrase family protein [Lactobacillus reuteri DSM 20016]
 gi|184153472|ref|YP_001841813.1| integrase [Lactobacillus reuteri JCM 1112]
 gi|227364526|ref|ZP_03848588.1| phage integrase/recombinase [Lactobacillus reuteri MM2-3]
 gi|325682358|ref|ZP_08161875.1| phage integrase family integrase/recombinase [Lactobacillus reuteri
           MM4-1A]
 gi|148531136|gb|ABQ83135.1| phage integrase family protein [Lactobacillus reuteri DSM 20016]
 gi|183224816|dbj|BAG25333.1| integrase [Lactobacillus reuteri JCM 1112]
 gi|227070435|gb|EEI08796.1| phage integrase/recombinase [Lactobacillus reuteri MM2-3]
 gi|324978197|gb|EGC15147.1| phage integrase family integrase/recombinase [Lactobacillus reuteri
           MM4-1A]
          Length = 324

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 98/226 (43%), Gaps = 17/226 (7%)

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           + K+   +++R LS   SF  +L+      +S +  +  +K S ++     +++   L D
Sbjct: 106 SSKVTIDNIRRILS---SFFNWLEDEDYIIKSPVRRIHKVKVSTTVKETYTDEELEKLRD 162

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           N            D R+ A++  L   G+R+ E + L   +I   +    + GKG K RI
Sbjct: 163 NCK----------DIRDLAMIDFLASTGMRVGELVLLNRDDINFQERECIVFGKGSKERI 212

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
                +  K  L+ Y     D N  + + L+R  +   L  G  +  ++ L + LG+   
Sbjct: 213 -AYFDARAKLHLQKYLYTRTDSNEALFVSLYR--KHTRLTIGGVESRLKHLGKRLGIS-R 268

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
              H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V  +N
Sbjct: 269 VYPHKFRRTLATTAIDKGMPIEQLQRLLGHKRIDTTLHYAMVKQQN 314


>gi|237710496|ref|ZP_04540977.1| integrase [Bacteroides sp. 9_1_42FAA]
 gi|229455218|gb|EEO60939.1| integrase [Bacteroides sp. 9_1_42FAA]
          Length = 406

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 70/156 (44%), Gaps = 29/156 (18%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------GDKIRIVPLLPSVR 207
           A L+  Y  GLR S+   LTP+N       +RI GK          G +IR+ PL     
Sbjct: 236 AFLFCCY-TGLRYSDFCQLTPENF------IRINGKRWLYFKSVKTGVEIRL-PL----- 282

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             + E   L   D     + P    +   P N  V  R +R+L    G+    T H  RH
Sbjct: 283 HLLFESRALGSLD-----RYPDIGSLAALPCNSEV-NRQLRKLAGLCGIKKRITYHVSRH 336

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           + AT L+  G  + ++Q +LGH  + TTQIY+ + S
Sbjct: 337 TCATLLIHQGVAITTVQKLLGHTSVKTTQIYSEILS 372


>gi|138895716|ref|YP_001126169.1| transposition regulatory protein TnpA [Geobacillus
           thermodenitrificans NG80-2]
 gi|138897050|ref|YP_001127503.1| transposition regulatory protein TnpA [Geobacillus
           thermodenitrificans NG80-2]
 gi|196250971|ref|ZP_03149654.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|134267229|gb|ABO67424.1| Transposition regulatory protein TnpA [Geobacillus
           thermodenitrificans NG80-2]
 gi|134268563|gb|ABO68758.1| Transposition regulatory protein TnpA [Geobacillus
           thermodenitrificans NG80-2]
 gi|196209535|gb|EDY04311.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 379

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 109/231 (47%), Gaps = 37/231 (16%)

Query: 85  DRSLKRSLSG----IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           D+ LK+  +G     K FL ++ K K  +  +IL ++  +K     + L +++   L++ 
Sbjct: 131 DKLLKQVFTGGRTRYKDFLYHVNKNK-PSNRHILKVKEPRKK---LKVLTKEEVQQLIEA 186

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQ-------G 192
                       + R+  ++ LL+  GLRI EALSL  ++ I D ++  RI+        
Sbjct: 187 T----------TNIRDRLLIQLLFETGLRIGEALSLFIEDFIFDHKNGHRIRLVNRGELE 236

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFD----LNLNIQLPLFRGIRGK----PLNPGVFQ 244
            G K++       V +A+++  D   ++    LNLN    +F  +RGK    P+     +
Sbjct: 237 NGAKLKTGEREIYVSQALMDLLDDYLYEVVDELNLNTNF-VFVKLRGKNVGQPMTYCDVE 295

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
              ++LR+  G+ +    H LRH+ AT       D++ +Q  LGH ++ TT
Sbjct: 296 ALFKRLRKKTGIHVH--PHLLRHTHATMYYQQTKDIKQVQERLGHSQIQTT 344


>gi|88800923|ref|ZP_01116476.1| resolvase [Reinekea sp. MED297]
 gi|88776368|gb|EAR07590.1| resolvase [Reinekea sp. MED297]
          Length = 262

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 25/172 (14%)

Query: 163 LYGCGLRISEALSLTPQNIMDDQ--------STLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           L+  G RISE L++TP + ++D          TL+ +  G   R+VP++     A+L+ +
Sbjct: 91  LWVTGGRISEVLAMTPAHCINDDHLGQGIALPTLK-KRNGQPYRLVPVVDPHYWAMLKRF 149

Query: 215 DLCPFDLNLNIQLPLFR-------GIRGKP--LNPGVFQRY----IRQLRRYLGLPLSTT 261
                +       P+F+         R KP  L     QR+    + +LR +    L  T
Sbjct: 150 L---GEHRGGQHAPIFQSRTKTTDAKRAKPKALTSRTVQRWTDDAMERLREHYNPGLRVT 206

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            HT RHSFA + L +G D++ I   LGH  +  T+ Y  V S + G  M  +
Sbjct: 207 PHTFRHSFAVNALLHGRDIQVISGWLGHASVRETERYLKVLSLDTGHLMQGV 258


>gi|315651213|ref|ZP_07904243.1| phage integrase family integrase/recombinase [Eubacterium saburreum
           DSM 3986]
 gi|315486509|gb|EFU76861.1| phage integrase family integrase/recombinase [Eubacterium saburreum
           DSM 3986]
          Length = 327

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/251 (21%), Positives = 110/251 (43%), Gaps = 25/251 (9%)

Query: 61  QTIRQLSYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           + ++ +   +IR +++    K+++ K+   +++R LS   SF  +L+      +S +  +
Sbjct: 86  KDVKHIVTDDIRGYLTEYQEKKKSSKVTIDNIRRILS---SFFAWLEDEDYILKSPVRRI 142

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             +K   ++    +++    + DN            + R+ AI+ +L   G+R+ E + L
Sbjct: 143 HKVKTGTNIKETYSDEALELMRDNC----------TELRDLAIIDMLASTGMRVGEMVLL 192

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-- 234
              +I  ++    + GKG K R+V      +  +  Y      +  ++    LF  ++  
Sbjct: 193 NRNDIDFNERECIVFGKGSKERVVYFDARTKIHLQNY-----LNSRIDDNPALFVSLKEP 247

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            K L  G  +  +R+  + LGL      H  R + AT  +  G  +  +Q +LGH ++ T
Sbjct: 248 HKRLKIGGIEVRLREYGKKLGLQ-KVHPHKFRRTLATMAIDKGMPIEQLQQLLGHRKIDT 306

Query: 295 TQIYTNVNSKN 305
           T  Y  V   N
Sbjct: 307 TLQYAMVKQSN 317


>gi|307564939|ref|ZP_07627459.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307346379|gb|EFN91696.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 410

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 14/159 (8%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP--LLPSVRKAILEYYDLC 217
            ++ C  GL   +  +L P+NI+       I  K  K  +    LL  + K+I+  Y   
Sbjct: 249 FVFSCFTGLAYIDVYNLAPENIVTLNGKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSGK 308

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            +         LF  +  + LN      Y++++    G+  + T H  RH+FAT  LS G
Sbjct: 309 TYR-----DGKLFPMLTNQKLNS-----YLKEIADICGIKKNLTFHLARHTFATMSLSKG 358

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + S+  +LGH  + TTQIY  + +K     M E+ D+
Sbjct: 359 VPIESVSKMLGHTNIKTTQIYARITNKKIEHDMDELADK 397


>gi|237718794|ref|ZP_04549275.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229451926|gb|EEO57717.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 407

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 16/151 (10%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYY 214
           A ++ LY CGLR  +   LT +N+      L+ +    KG       ++P +   +L   
Sbjct: 255 AFIFCLY-CGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIP-LNDGLLSII 312

Query: 215 DLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
              P D N L   LP +              + +++  +  G+    + H  RHSFA ++
Sbjct: 313 GEAPADKNCLIFDLPTYESC----------CKSVKRWVKRAGIDKHISWHCARHSFAVNI 362

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           L+NG +++++ S+LGH  L  T+ YT    K
Sbjct: 363 LNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|237738614|ref|ZP_04569095.1| phage integrase [Fusobacterium sp. 2_1_31]
 gi|229424097|gb|EEO39144.1| phage integrase [Fusobacterium sp. 2_1_31]
          Length = 371

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 92/198 (46%), Gaps = 40/198 (20%)

Query: 133 QALTLVDNVLLHTSHETKWI----DARN--SAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           Q +T  +N+ + +  E + +    D R+    ++Y  +  GLR+ E L L   +I D+  
Sbjct: 170 QKITKKENINVFSKQEQEMVLRTLDKRDIVDCLIYFTFYTGLRLGEVLGLQWSDIKDNMV 229

Query: 187 TLRIQGKG----DKI------------------RIVPLLPSVRKAILEYYDLCPFDLNLN 224
            +  Q +     DK+                  R +PL   V++ + +     P   NL 
Sbjct: 230 KITRQYRRNVDVDKVDDRKLTYTFKELKTKNSAREIPLPDKVQELLKD----IPRQGNL- 284

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
               +F  + GKP+ P   QR I  + + L +P   + H++RHS+AT L      ++++Q
Sbjct: 285 ----IFSNL-GKPIEPKKPQRRIASICKKLNIP-HRSFHSIRHSYATRLFEMDIPIKTVQ 338

Query: 285 SILGHFRLSTT-QIYTNV 301
            +LGH  ++TT  IYT+V
Sbjct: 339 VLLGHGDIATTMDIYTHV 356


>gi|189346557|ref|YP_001943086.1| integrase/recombinase-related protein [Chlorobium limicola DSM 245]
 gi|189340704|gb|ACD90107.1| integrase/recombinase-related protein [Chlorobium limicola DSM 245]
          Length = 64

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 30/41 (73%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T H LRHS+ATHLL  G DLR IQ +LGH    TT+IYT+V
Sbjct: 9   TLHGLRHSYATHLLEVGTDLRYIQELLGHKSSKTTEIYTHV 49


>gi|86139483|ref|ZP_01058051.1| integrase/recombinase [Roseobacter sp. MED193]
 gi|85823666|gb|EAQ43873.1| integrase/recombinase [Roseobacter sp. MED193]
          Length = 274

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 8/119 (6%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDL 216
           A L + YG GLR SE  +L   +I  D+  + ++ GKG K R V L P + + +  ++  
Sbjct: 128 AALSISYGAGLRASEVCNLKISDIDSDRMLIHVELGKGQKDRKVMLSPGLLELLRAWWR- 186

Query: 217 CPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                    +  LF G  +  P++P    R     +   G+    T HTLRHSFATHLL
Sbjct: 187 -----EARPEGWLFPGKPKINPISPRQLSRAFTSAKHMAGVKKPATLHTLRHSFATHLL 240


>gi|262382819|ref|ZP_06075956.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262295697|gb|EEY83628.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 407

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 16/151 (10%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYY 214
           A ++ LY CGLR  +   LT +N+      L+ +    KG       ++P +   +L   
Sbjct: 255 AFVFCLY-CGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIP-LNDGLLSII 312

Query: 215 DLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
              P D N L   LP +              + +++  +  G+    + H  RHSFA ++
Sbjct: 313 GEAPADKNCLIFDLPTYESC----------CKSVKRWVKRAGIDKHISWHCARHSFAVNI 362

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           L+NG +++++ S+LGH  L  T+ YT    K
Sbjct: 363 LNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|229136804|ref|ZP_04265451.1| Tyrosine recombinase [Bacillus cereus BDRD-ST196]
 gi|228646665|gb|EEL02853.1| Tyrosine recombinase [Bacillus cereus BDRD-ST196]
          Length = 357

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 126/304 (41%), Gaps = 42/304 (13%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK---------RRTQKIGD 85
           TL +Y  D R F  +L   +E+ I  + I+ +S++++     K         +  Q + +
Sbjct: 43  TLLNYVYDFRVFFNWLL--SEQIIEFKPIKDISFSDLENLKKKDVENFMRFLKLQQNMQN 100

Query: 86  RSLKRSLSGIKSFLKYL------------------KKRKITTESNILNMRNLKKSNSLPR 127
            S+ R +S +KS  KYL                   K +I  +   LN R  +  + +  
Sbjct: 101 SSVNRKISALKSLFKYLTSLSENDDGECYFYRNVMAKIEIHKDKETLNARAKRMRSKIFH 160

Query: 128 ALNEKQALTLV--DNVLLHTSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIM 182
             ++++ L  +  ++    T H+  +      R+ AIL L  G G+R+SE   L  ++I 
Sbjct: 161 NDDDQEFLNYIKYEHEKSLTKHQLFYFLRDKDRDVAILSLFLGSGIRVSELADLRMEDIN 220

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKP 237
             +  + +  KG+K   V + P     + +Y ++      P     N+ L  ++    +P
Sbjct: 221 LKERLIDVIRKGNKEDSVWITPIALNDLEKYMEIRDKKYAPGKELKNVFLSKYKHT-AQP 279

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+    Q  + +  +  G  +S   H LRHS A  L     D   +   LGH    T  +
Sbjct: 280 LSVRAIQDIVEKYTKSFGKRMS--PHKLRHSLANKLYMEEKDSLQVMQQLGHTSQDTALL 337

Query: 298 YTNV 301
           YT +
Sbjct: 338 YTQL 341


>gi|327314345|ref|YP_004329782.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|326946202|gb|AEA22087.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 408

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 14/159 (8%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            ++ C  GL   +  +LTP NI  +DD+  +  + +   +    LL  + K I+  Y   
Sbjct: 249 FIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPKRIIAKYSGK 308

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            +         LF  +  +  N      Y++++    G+  + T H  RH+FAT  LS G
Sbjct: 309 TYR-----DGKLFPILTNQKTNA-----YLKEIADLCGVKKNLTFHLARHTFATMSLSKG 358

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + S+  +LGH  + TTQIY  + +K     M ++ D+
Sbjct: 359 VPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQLADK 397


>gi|313675312|ref|YP_004053308.1| integrase family protein [Marivirga tractuosa DSM 4126]
 gi|312942010|gb|ADR21200.1| integrase family protein [Marivirga tractuosa DSM 4126]
          Length = 413

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 77/157 (49%), Gaps = 21/157 (13%)

Query: 162 LLYGC--GLRISEALSLTPQNI---MDDQ---STLRIQGKGDKIRIVPLLPSVRKAILEY 213
            ++ C  GL   +  +L+ +NI   MD +   ST R Q   +K+  +PLLP   +AILE 
Sbjct: 250 FVFSCYTGLSFIDVANLSEENIIIGMDGEKWISTHR-QKTFNKV-FLPLLPQA-EAILEK 306

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
           Y   P   +  I LP     +           Y++++     +    T H  RH+FAT +
Sbjct: 307 YKDNPQAQHRGILLPAASNQKTNA--------YLKEIADLCEIKKKLTFHIARHTFATTV 358

Query: 274 -LSNGGDLRSIQSILGHFRLSTTQIYTN-VNSKNGGD 308
            L+NG  + ++  +LGH +L+ TQIY   V +K G D
Sbjct: 359 TLTNGVPIETVSKMLGHTKLANTQIYAKVVENKIGTD 395


>gi|227830730|ref|YP_002832510.1| integrase [Sulfolobus islandicus L.S.2.15]
 gi|229581710|ref|YP_002840109.1| integrase family protein [Sulfolobus islandicus Y.N.15.51]
 gi|284998243|ref|YP_003420011.1| phage integrase family protein [Sulfolobus islandicus L.D.8.5]
 gi|227457178|gb|ACP35865.1| integrase family protein [Sulfolobus islandicus L.S.2.15]
 gi|228012426|gb|ACP48187.1| integrase family protein [Sulfolobus islandicus Y.N.15.51]
 gi|284446139|gb|ADB87641.1| phage integrase family protein [Sulfolobus islandicus L.D.8.5]
          Length = 291

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 113/234 (48%), Gaps = 48/234 (20%)

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + KRR + +   +++  +  ++ FLK+L    ++ +  I  +R  +      +AL+E Q 
Sbjct: 77  VEKRRAKSV---TIRYYIIAVRRFLKWLN---VSVKPPIPKVRRKE-----VKALDESQI 125

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-K 193
                  +L+T   TK     +  I+ LL   GLR +E LS+  +++  + + +R++  K
Sbjct: 126 -----QKVLNTCKRTK-----DKLIIRLLLDTGLRANELLSVLVKDVDLENNMIRVRNTK 175

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ----RYIRQ 249
             + R+V      ++ + +Y                   ++GK L+  +F        R+
Sbjct: 176 NGEERVVFFTDETKQLLRKY-------------------MKGKKLDEKLFDITYDALYRK 216

Query: 250 LRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           L+R LG  + +    H LRH+FAT  L  G ++ ++Q +LGH  + TTQIYT++
Sbjct: 217 LKR-LGNKVEIELRPHILRHTFATLSLKRGINVITLQKLLGHKDIKTTQIYTHL 269


>gi|10956075|ref|NP_052162.1| DNA invertase-like protein [Chlorobium limicola]
 gi|1688244|gb|AAB36935.1| DNA invertase homolog [Chlorobium limicola]
          Length = 182

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 63/155 (40%), Gaps = 13/155 (8%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILE 212
           AR+  +L L++  GLR+SEA  L    +  +   L +      +    PL     KAI  
Sbjct: 26  ARDRCLLLLMFRHGLRVSEACGLQLSQVDAESRVLHVSRLKKGLSTTHPLRTDELKAIRA 85

Query: 213 YYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +       L +  ++       F   R  PL+       IR+     GLPL    H LRH
Sbjct: 86  W-------LAIRAKMKPDTDDFFLSNRRGPLSRKTAWLAIRKYGELAGLPLPAHPHMLRH 138

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +    L   G D R IQ  LGH  +  T IYT  N
Sbjct: 139 ACGFALADQGADTRLIQDYLGHRNIQHTVIYTAAN 173


>gi|237713434|ref|ZP_04543915.1| mobilizable transposon [Bacteroides sp. D1]
 gi|262407221|ref|ZP_06083769.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229446416|gb|EEO52207.1| mobilizable transposon [Bacteroides sp. D1]
 gi|262354029|gb|EEZ03121.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 386

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 70/155 (45%), Gaps = 30/155 (19%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
            L+ C  GLR S+   LT   +         Q  GD  RIV      +    EY      
Sbjct: 239 FLFSCLTGLRKSDIQKLTWSEV---------QKFGDYTRIV--FKQKKTGGQEY------ 281

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIR------QLRRY---LGLPLSTTAHTLRHSFA 270
            L+++ Q   + G RG P +P VF  +        +L+R+     +  + T H  RH+FA
Sbjct: 282 -LDISSQAEKYLGERGNPEDP-VFTGFTYGAWTSLELQRWSMAANINKNLTFHCGRHTFA 339

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             +L  G D+ ++  +LGH  L+TTQIY  V  KN
Sbjct: 340 VLMLDLGADIYTVSKLLGHKELATTQIYAKVLDKN 374


>gi|226349908|ref|YP_002777021.1| putative integrase/recombinase [Rhodococcus opacus B4]
 gi|226245823|dbj|BAH47090.1| putative integrase/recombinase [Rhodococcus opacus B4]
          Length = 329

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 119/305 (39%), Gaps = 44/305 (14%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L  +R  S+ T+ +Y    R  L F+   T    +      L    I AF+     
Sbjct: 12  FLERLSTQRRASEHTIAAYRDAMRLLLAFMEQRTHRAPSRLDWTDLDADAICAFLDHLEK 71

Query: 81  QKIGD-RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +    R+    L+ I+S   Y   R     + I  +       ++P    +K  +  +D
Sbjct: 72  DRANSARTRNARLTAIRSLFSYAALRHPEHAALIAQVL------AIPPKRFDKAIVCFLD 125

Query: 140 N----VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-LRIQGKG 194
                 +L  +  + W   R+ A++ L    GLR+SE L L   +++   S  +R  GKG
Sbjct: 126 EPEAAAMLAAADRSTWAGRRDHALMTLAMQTGLRVSELLGLNCGDVVTGTSGHVRCVGKG 185

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR---------GKPLNPGVFQR 245
            K R VP+  SVR               +N+ L    G R         G+ L+    QR
Sbjct: 186 RKERSVPMTESVRSV-------------MNVWLIERAGQRDDAAFCTRTGRRLSVDAVQR 232

Query: 246 ----YIRQLRR----YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
               Y  Q R+     +G  LS   H  RH+ A  LL  G D   I   LGH  + +T  
Sbjct: 233 RVNIYAAQARQSCPSLVGKHLSP--HVFRHTCAMTLLHAGVDTTVIALWLGHADVRSTTA 290

Query: 298 YTNVN 302
           Y + +
Sbjct: 291 YLHAD 295


>gi|329960376|ref|ZP_08298801.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328532814|gb|EGF59596.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 407

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 16/151 (10%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYY 214
           A ++ LY CGLR  +   LT +N+      L+ +    KG       ++P +   +L   
Sbjct: 255 AFIFCLY-CGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIP-LNDGLLSII 312

Query: 215 DLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
              P D N L   LP +              + +++  +  G+    + H  RHSFA ++
Sbjct: 313 GEAPADKNCLIFDLPTYESC----------CKSVKRWVKRAGIDKHISWHCARHSFAVNI 362

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           L+NG +++++ S+LGH  L  T+ YT    K
Sbjct: 363 LNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|227827993|ref|YP_002829773.1| integrase family protein [Sulfolobus islandicus M.14.25]
 gi|229585262|ref|YP_002843764.1| integrase family protein [Sulfolobus islandicus M.16.27]
 gi|238620221|ref|YP_002915047.1| integrase family protein [Sulfolobus islandicus M.16.4]
 gi|227459789|gb|ACP38475.1| integrase family protein [Sulfolobus islandicus M.14.25]
 gi|228020312|gb|ACP55719.1| integrase family protein [Sulfolobus islandicus M.16.27]
 gi|238381291|gb|ACR42379.1| integrase family protein [Sulfolobus islandicus M.16.4]
          Length = 291

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 113/234 (48%), Gaps = 48/234 (20%)

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + KRR + +   +++  +  ++ FLK+L    ++ +  I  +R  +      +AL+E Q 
Sbjct: 77  VEKRRAKSV---TIRYYIIAVRRFLKWLN---VSVKPPIPKVRRKE-----VKALDESQI 125

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-K 193
                  +L+T   TK     +  I+ LL   GLR +E LS+  +++  + + +R++  K
Sbjct: 126 -----QKVLNTCKRTK-----DKLIIRLLLDTGLRANELLSVLVKDVDLENNMIRVRNTK 175

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ----RYIRQ 249
             + R+V      ++ + +Y                   ++GK L+  +F        R+
Sbjct: 176 NGEERVVFFTDETKQLLRKY-------------------MKGKKLDEKLFDITYDALYRK 216

Query: 250 LRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           L+R LG  + +    H LRH+FAT  L  G ++ ++Q +LGH  + TTQIYT++
Sbjct: 217 LKR-LGNKVEIELRPHILRHTFATLSLKRGINVITLQKLLGHKDIKTTQIYTHL 269


>gi|225175140|ref|ZP_03729136.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169316|gb|EEG78114.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
          Length = 386

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 120/267 (44%), Gaps = 56/267 (20%)

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLK-YLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++  + +++  ++  RS++   + I + LK  LK+R I+       +  L K+  +    
Sbjct: 118 VQKLLDEKQGGELSPRSVRYIHTTINTALKSALKQRIISFNPADAELLELPKNTKI---- 173

Query: 130 NEKQALTLVD-NVLLHTSHETKWIDARNSAILYLL-YGCGLRISEALSLTPQNIMDDQST 187
            E + LT  D    + T+ E K+      ++ Y+L    G+R  E L L  +NI  +Q T
Sbjct: 174 KEVKPLTQDDVKAFIATAKEDKF------SVAYILSLALGMRKGEVLGLQWENIDFEQKT 227

Query: 188 L-------RIQGKG---------DKIRIVPLLPS------------------VRKAILEY 213
           L       R++GKG            R+V LLP                   + KA  +Y
Sbjct: 228 LTIKNNLTRVKGKGLVLTTPKTASSNRVV-LLPEKILTLLSEHGRKQAVEREIAKASGKY 286

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            +   FD N+     +F    GKP+ P  F+R  +++    GL  +   H+LRHS+ T  
Sbjct: 287 SEAEGFD-NM-----VFTYEEGKPVCPRYFERKFKKVLEKAGLSQAGL-HSLRHSYGTLQ 339

Query: 274 LSNGGDLRSIQSILGHFRLS-TTQIYT 299
              G ++++IQ+ LGH + S T  +YT
Sbjct: 340 NEAGVNMKAIQATLGHSKASFTMSVYT 366


>gi|319641592|ref|ZP_07996279.1| hypothetical protein HMPREF9011_01877 [Bacteroides sp. 3_1_40A]
 gi|317386792|gb|EFV67684.1| hypothetical protein HMPREF9011_01877 [Bacteroides sp. 3_1_40A]
          Length = 386

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 70/155 (45%), Gaps = 30/155 (19%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
            L+ C  GLR S+   LT   +         Q  GD  RIV      +    EY      
Sbjct: 239 FLFSCLTGLRKSDIQKLTWSEV---------QKFGDYTRIV--FKQKKTGGQEY------ 281

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIR------QLRRY---LGLPLSTTAHTLRHSFA 270
            L+++ Q   + G RG P +P VF  +        +L+R+     +  + T H  RH+FA
Sbjct: 282 -LDISSQAEKYLGERGNPEDP-VFTGFTYGAWTSLELQRWSMAANINKNLTFHCGRHTFA 339

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             +L  G D+ ++  +LGH  L+TTQIY  V  KN
Sbjct: 340 VLMLDLGADIYTVSKLLGHKELATTQIYAKVLDKN 374


>gi|297521334|ref|ZP_06939720.1| integrase [Escherichia coli OP50]
          Length = 111

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           F+R ++ ++    LP     H LRHSFATH + NGG + ++Q ILGH R+  T +Y +
Sbjct: 25  FRRTMKAIKP--DLPTGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAH 80


>gi|167761671|ref|ZP_02433798.1| hypothetical protein BACSTE_00005 [Bacteroides stercoris ATCC
           43183]
 gi|167700458|gb|EDS17037.1| hypothetical protein BACSTE_00005 [Bacteroides stercoris ATCC
           43183]
          Length = 352

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 96/204 (47%), Gaps = 31/204 (15%)

Query: 102 LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
            +K KI T  N       K ++ +P  L + + L+L D    H   + K +DA     L+
Sbjct: 147 FRKYKIKTVEN-------KHTHLVPEELEQLERLSLTDK---HMKLQ-KSLDA----FLF 191

Query: 162 LLYGCGLRISEALSLTPQNIMD-DQSTLRIQGK---GDKIRIVPLLPSVRKAILEYYDLC 217
             Y  G+R S+  +L+ +NI+D +Q T  I      G ++R+   L    K I+    L 
Sbjct: 192 CCYA-GMRYSDFTNLSKKNIVDINQETWLIYKSVKTGTEVRLPLYLLFAGKGIV---ILN 247

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            +  NL      FR      +N  +       + +  GL    + HT RH+ AT L+ NG
Sbjct: 248 KYRNNLE---DFFRLRDNSNINKDLII-----IAKLAGLSKKISFHTARHTNATLLIYNG 299

Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301
            ++ ++Q +LGH  + TTQ+YTN+
Sbjct: 300 VNITTVQKLLGHKSVKTTQVYTNI 323


>gi|323530187|ref|YP_004232339.1| hypothetical protein BC1001_5915 [Burkholderia sp. CCGE1001]
 gi|323387189|gb|ADX59279.1| Protein of unknown function DUF3701 [Burkholderia sp. CCGE1001]
          Length = 570

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 129/306 (42%), Gaps = 40/306 (13%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +ERG  LS LT      D   +  FL   T  +  +  +R  S  + R F +      + 
Sbjct: 256 VERGRALSSLTTD----DAIVYRAFLRRPTPRERWVGPLRPRSSPDWRPFAAN-----LA 306

Query: 85  DRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSL--PRALNEKQALTLVDN 140
             S+  +LS + +  ++L +++  +    + + ++  KK++     RA +E +   LV  
Sbjct: 307 ASSVAHALSILNALFRWLIEQRYVLANPFSGVKVKGGKKTSDFDSSRAFSEWE-WNLVRT 365

Query: 141 VLLHTSHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDD---QSTLRIQGKG 194
           +         W       + ++L   +  GLR SE +  +  ++  D   +  L++ GKG
Sbjct: 366 IAQRLEWSHGWSKPSAERLRFILDFGFATGLRASELVGASLGHVTTDSHGEHWLKVTGKG 425

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLR 251
            K   V L P    A+  Y  L    +     +P   L   + G+ ++     R    L+
Sbjct: 426 HKTGRVALPPLAWDALTRYLTLRELPVTPARWVPETSLVGNLAGESMSAITGVRLWAILK 485

Query: 252 RYLGL----------PLS-----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           R+  L          PL+      + H +RH+ ATH L +G +L +++  L H  +STT 
Sbjct: 486 RFFRLAADQIAVDHPPLAGKLRRASPHWMRHTHATHALEHGAELTTVRDNLRHASISTTS 545

Query: 297 IYTNVN 302
           +Y + +
Sbjct: 546 LYLHAD 551


>gi|182418902|ref|ZP_02950159.1| site-specific recombinase, phage integrase family [Clostridium
           butyricum 5521]
 gi|237667033|ref|ZP_04527017.1| site-specific recombinase, phage integrase family [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182377185|gb|EDT74753.1| site-specific recombinase, phage integrase family [Clostridium
           butyricum 5521]
 gi|237655381|gb|EEP52937.1| site-specific recombinase, phage integrase family [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 364

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 123/290 (42%), Gaps = 56/290 (19%)

Query: 51  AFYTEEKITIQTIRQLSYTE-IRAF----------ISKRRTQKIGD---------RSLKR 90
           AF   +K+ I+     SY++ ++ F          I K   QK+ D          +LK 
Sbjct: 80  AFLDHKKLYIKACTYTSYSQNLKVFKDLNDKKIIDIKKVDVQKVFDVLLEKKSKYNTLKD 139

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
               +    K+ K+       N +N++  KK  +L +AL + +    +DNVL  +  + K
Sbjct: 140 YRGTLNLLFKFYKENYDPNYENNINIKLPKKDATLKKALTKSE----LDNVL--SFFKLK 193

Query: 151 WIDARNSAILYLLYG-CGLRISEALSLTPQNIMDDQSTLRIQ--------GKGDKI---- 197
               +   I  L+ G CGLR SE + L   +I     TL ++        G+ + I    
Sbjct: 194 PPTGQWQYITCLIAGTCGLRFSEIMGLKWNDIDSVNLTLTVERQYRQNLNGEWEFITPKS 253

Query: 198 ----RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
               RI+PL  S  + + +Y    P D+N  I             NP   Q Y+  L R 
Sbjct: 254 KNSTRIIPLPKSTYEELKKYRTEQPTDINNRIVTK----------NPRTAQ-YL--LNRS 300

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           L    + + H LRH++ T L++N  D +++    GH    T ++Y++VN 
Sbjct: 301 LNKIANISLHELRHTYITLLVANNVDFKTVAQFAGHDVEQTLKVYSHVND 350


>gi|160876042|ref|YP_001555358.1| integrase family protein [Shewanella baltica OS195]
 gi|160861564|gb|ABX50098.1| integrase family protein [Shewanella baltica OS195]
          Length = 318

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 23/144 (15%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I+ +    G R SEA +LT   ++DD+    I  K  K R +P+    R           
Sbjct: 182 IVKICLSTGARWSEAQNLTSSQLLDDRINF-INTKNGKNRTIPITREFRA---------- 230

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNG 277
                  +LP   G     L    + +++  L+   + LP    +H LRH+FA+H + NG
Sbjct: 231 -------ELPNGNG----RLFTDCYHQFLAVLKSSGIELPKGQASHVLRHTFASHFVMNG 279

Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301
           G++ ++Q ILGH  +  T  Y ++
Sbjct: 280 GNILTLQKILGHGSIQMTMRYAHL 303


>gi|317476899|ref|ZP_07936142.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316907074|gb|EFV28785.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 368

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 70/148 (47%), Gaps = 21/148 (14%)

Query: 163 LYGC--GLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           L+ C  GLRIS+ L LT  NI    D+   +RI    +K      LP   +A+    +LC
Sbjct: 225 LFSCMTGLRISDILQLTWDNIEVGPDNGYYIRICT--EKTETEATLPISNEAL----ELC 278

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
               +  +   L R +  +PL         +Q     G+    T H  RHS+A   +S G
Sbjct: 279 GIPDSGRVFKGLTRAMTNQPL---------KQWISEAGIKKHITFHCFRHSYAVIQISLG 329

Query: 278 GDLRSIQSILGHFRLSTTQIYTN-VNSK 304
            D+ ++  +L H  +STTQIY + VNSK
Sbjct: 330 TDIYTVSKMLTHKNVSTTQIYADLVNSK 357


>gi|225020746|ref|ZP_03709938.1| hypothetical protein CORMATOL_00753 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946519|gb|EEG27728.1| hypothetical protein CORMATOL_00753 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 294

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 71/150 (47%), Gaps = 16/150 (10%)

Query: 153 DARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
           D R + I+ L    GLR SE   L +T          L I GKG K R++P   ++  AI
Sbjct: 135 DQRPAVIIRLAAELGLRRSEIACLHMTDLKGHVGNRWLVIHGKGGKQRVLPCPETLAHAI 194

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
                    D N  +    F G     L+P    R+I +L   + L  S T HTLRH FA
Sbjct: 195 KSVSS----DDNGWV----FPGKIDGHLSP----RWIAKLATRV-LAESWTLHTLRHRFA 241

Query: 271 THLLSNGG-DLRSIQSILGHFRLSTTQIYT 299
           T   + GG DL +IQ  +GH  ++TTQ YT
Sbjct: 242 TVAYNEGGHDLLTIQQAMGHENIATTQRYT 271


>gi|186473761|ref|YP_001861103.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184196093|gb|ACC74057.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 495

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 104/252 (41%), Gaps = 22/252 (8%)

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNEKQ 133
           + R +Q +G+RS KR+L+ ++S L YL +    T +    + +   +     P  +    
Sbjct: 228 TPRASQVLGERSQKRALAVVRSVLSYLWRTGYLTANPGAGLGDTAAAREKFAPDRILPAG 287

Query: 134 ALTLVDNVL-LHTSHETKWIDA-RNSAILYLLYGCGLRISEAL--SLTPQNIM-DDQSTL 188
           A+   D+ L    + E + I   R +AI+      G+R+ E       P+ +  DD  TL
Sbjct: 288 AVHACDSWLRARLNPEGRPIAVMRRAAIVATYRFTGIRLDELAWHDGYPRVVTGDDGWTL 347

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           +++GKG + R VPL       + +Y   C  P        LPL RG R   L P    R 
Sbjct: 348 QVRGKGRRERAVPLPGPCVIFLQQYRQACGLPPTPPPRENLPLIRGQRHDALGPSGLYRE 407

Query: 247 IRQLRRYLGLPLSTT------------AHTLRHSFATHLLSNGG-DLRSIQSILGHFRLS 293
           +R     +   +  T             H LRH     L+ +    L   Q +LGH  ++
Sbjct: 408 VRAAFAEMAAAVPPTEATTRLALQEASPHWLRHLVGKTLVVDANVPLPVAQMLLGHQSVA 467

Query: 294 TTQIYTNVNSKN 305
           TT  Y   ++  
Sbjct: 468 TTAGYARADASQ 479


>gi|73853284|ref|YP_308780.1| site-specific recombinase [Escherichia coli]
 gi|73476868|gb|AAZ76483.1| Site-specific recombinase [Escherichia coli]
          Length = 268

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 97/235 (41%), Gaps = 70/235 (29%)

Query: 121 KSNSLPRALNEKQALTLVDNVLLHT-------SHETKWI-----DARNSAILYLLYGCGL 168
           +  SLP A++   AL L    ++H        + E   +     D R   +L  L+  G 
Sbjct: 22  QPASLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPDLRRKMLLATLWNTGA 81

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL----------------- 211
           RI+EAL+LT               +GD   +VP  P V+ A L                 
Sbjct: 82  RINEALALT---------------RGD-FSLVPPYPFVQLATLKQRTEKAARTAGRTPAG 125

Query: 212 -EYYDLCPFD----------LNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG--- 255
            + + L P            +   +++P+ R  +  G+     +++   R +R ++G   
Sbjct: 126 QQTHRLVPLSDSWYVSQLQTMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTWIGEAV 185

Query: 256 ---------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                      +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 186 AAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240


>gi|53711947|ref|YP_097939.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52214812|dbj|BAD47405.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 406

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 23/173 (13%)

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI 199
           ++L      K ++      ++ ++  GL  S+   L+P++++ D++  L I+    K +I
Sbjct: 232 IILAKEFTIKRVEQVRDVFIFCVFT-GLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKI 290

Query: 200 ---VPLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
              +P+LP V  +ILE Y     C   L     LP+    R           Y++++   
Sbjct: 291 MCNIPVLP-VAVSILEKYKNVAECTGKL-----LPVLSNQR--------MNSYLKEIADV 336

Query: 254 LGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            G+  + + HT RHS+AT + L+NG  + ++  +LGH   S T+ Y  V  +N
Sbjct: 337 CGIHKNLSTHTARHSYATSICLANGVSMENVAKMLGHADTSITKHYARVLDQN 389


>gi|163784459|ref|ZP_02179335.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880274|gb|EDP73902.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 283

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 68/144 (47%), Gaps = 17/144 (11%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLC 217
           +  L    G+R+ E   L  ++I  ++  + ++  K    R++P+ P+++K I+ Y    
Sbjct: 142 VFRLFIYTGMRLGEITRLKWEHINLNREIITVEKSKSFHSRVIPIHPTLKKDIIRYKK-- 199

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
             D+   +           P      Q  ++   R  G P     H LRH+FA+ ++  G
Sbjct: 200 --DIGKVV-----------PFKRRYIQERLKNYFRKAGYP-DLRVHDLRHTFASLMVMAG 245

Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301
            DL+++Q +LGH    TT+IY ++
Sbjct: 246 VDLKTVQELLGHQSYRTTEIYAHL 269


>gi|83643306|ref|YP_431741.1| integrase [Hahella chejuensis KCTC 2396]
 gi|83631349|gb|ABC27316.1| Integrase [Hahella chejuensis KCTC 2396]
          Length = 336

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 70/165 (42%), Gaps = 32/165 (19%)

Query: 153 DARNSAILYLLYGC---GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           +++N  +L +   C   G R  EA SL  Q +   +    I+ K  K R VP+   + K 
Sbjct: 185 ESKNPNVLVISKICLSTGARWGEAESLQAQQVKQGKIHF-IKTKNSKSRAVPISDELSKE 243

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKP----LNPGVFQRYIRQL--RRYLGLPLSTTAH 263
           I                      I G+P    L PG  ++  R    R  + LP     H
Sbjct: 244 I----------------------IAGRPRFGRLFPGTSKQAFRLAVERSGINLPDGQMTH 281

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            LRH+FA+H + N G++  ++ ILGH  LS T  Y  +  K+  D
Sbjct: 282 VLRHTFASHYMINDGNILKLKDILGHKTLSMTIRYAKLAPKHLAD 326


>gi|323190945|gb|EFZ76212.1| integrase [Escherichia coli RN587/1]
          Length = 346

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 24/144 (16%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           ++ +    G R +EA +L    I   + T  ++ KG + R +PL                
Sbjct: 201 VVKICLATGARWNEAATLKSSQIAGGKVTF-VKTKGKRNRTIPL---------------- 243

Query: 219 FDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSN 276
            D  L  +LP  +G +  KP     +  +   L R  + LP     H LRH+FA+H + N
Sbjct: 244 -DDELLSELPETKGALFPKP----CYNAFRSALERAGIELPSGQLTHVLRHTFASHFMMN 298

Query: 277 GGDLRSIQSILGHFRLSTTQIYTN 300
           GG++  +Q ILGH  ++ T  Y +
Sbjct: 299 GGNILVLQKILGHADITMTMRYAH 322


>gi|228911927|ref|ZP_04075666.1| Phage integrase [Bacillus thuringiensis IBL 200]
 gi|228847722|gb|EEM92637.1| Phage integrase [Bacillus thuringiensis IBL 200]
          Length = 319

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 126/295 (42%), Gaps = 57/295 (19%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T Q Y  D   FL ++      K TI TI++LS+ ++  +  +  ++K    +L++ 
Sbjct: 34  SERTKQQYLHDLSHFLHYI------KETIGTIQELSHNDMEIYFYEL-SKKYASTTLRKK 86

Query: 92  LSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVD-----NVLLH 144
            + ++ FLKY+      ++  S+ L   ++KK   + R L  ++   ++D     N  ++
Sbjct: 87  KTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLYPEEVTQILDELKKSNYFVY 146

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIV 200
           T+              +LL   GLRI E  +    +++   S     LR+ GKG+K R V
Sbjct: 147 TA-------------FFLLTTTGLRIEEIATAKWADLVFHSSLSAYLLRVVGKGNKSREV 193

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQ-----LPLFRG--IRGKPLNPGV----------F 243
            +      A+     L      L+       LP   G   R   L+  V          F
Sbjct: 194 RIFEDTLDALCHVRSLRKQTTELDASSTSAFLPKADGSNYRADYLSSLVAKKIEEINLDF 253

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            RY RQ R         T HT RH  A +L+  G +L+ I+  LGH  + TT+ Y
Sbjct: 254 LRY-RQDR--------ITPHTCRHFMANYLMEKGVELKKIRDYLGHESIMTTERY 299


>gi|172055007|ref|YP_001806334.1| integrase-recombinase protein [Cyanothece sp. ATCC 51142]
 gi|171701288|gb|ACB54268.1| integrase-recombinase protein [Cyanothece sp. ATCC 51142]
          Length = 316

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 130/296 (43%), Gaps = 35/296 (11%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE----IRAFISKRRT 80
           L +E   S +T + YE D R F   ++    ++  +    ++S ++    + A+ +  + 
Sbjct: 19  LWLEDKSSAMTRREYEKDLRYFFKVMSGKEVDEELVSAFLKVSQSQANAALMAYKATLKK 78

Query: 81  QKIGDRSLKRSLSGIKSFL---------KYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           +++   ++ R +S +KSF+         +Y  K  +++E     ++  + ++ +P  L E
Sbjct: 79  RELAPTTINRKISAVKSFISTANRLGLCQYSLKDAVSSE----KLKPYRDTSGIP--LTE 132

Query: 132 -KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            K+ L L D   L           R+ A+L L +   LR +E   L   + +  +  L +
Sbjct: 133 FKKVLALCDLTTLKGK--------RDRALLMLFWSNALRRNEVSLLDIGDFVPSRRILWV 184

Query: 191 QGKG-DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI----RGKPLNPGVFQR 245
           +GKG  +   V L P   KAI ++         +    PLF  +    RG  L+     +
Sbjct: 185 KGKGRSEKESVDLSPKTIKAICDWL-AERGSAGIKSSSPLFIALDSRSRGSRLSGDGLYK 243

Query: 246 YIRQLRRYLGLPLSTTAHTLRHS-FATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            IR   +  G+    + H +RHS   T L  + GD+R +Q +  H  L+T  IY +
Sbjct: 244 IIRCYCKDAGIDKLMSPHRIRHSSITTALDKSDGDVRKVQKLSRHKNLNTLMIYDD 299


>gi|150390297|ref|YP_001320346.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
 gi|149950159|gb|ABR48687.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
          Length = 372

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 137/313 (43%), Gaps = 42/313 (13%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTE-------EKITIQTIRQLSYTEI------ 71
           L ++ G++  T  +Y  D   F  +L  +TE         I I+T +Q++  +I      
Sbjct: 46  LYLKNGVALTTRLAYSEDVLFFCKYLVSHTELTDADHTTLIKIETFQQMTAKDINRYLGD 105

Query: 72  ---RAFISKRRTQKI---GDRSLKRSLSGIKSFLKYLKKRKITTE--SNILN-MRNLKKS 122
              R  I K  + KI    +R+L R  S +    K+L +  +  +  S+ LN +R  K  
Sbjct: 106 FCSRYSIEKEESIKIMENHNRALARKKSSLAVLFKFLYRDGLIKQNISDGLNPIRLPKPQ 165

Query: 123 NSLPRALNEKQALTLVDNVLLHTS----HETKW--IDARNSAILYLLYGCGLRISEALSL 176
               + L   +   ++D V L  +     +T W     R+ AIL L    GLR+SE   L
Sbjct: 166 PDAIKRLEIDEVARMIDCVDLGEAFTEKEKTYWQKTKLRDKAILMLFLTYGLRLSELEQL 225

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQL--PLFRGI 233
              +   ++   +I  K  K   +P+  +    I EY  +  P    L+ +    LF  +
Sbjct: 226 NISSFNFNRGEFKIYRKRGKETAMPINRTCETVIKEYMANERPQSSALDEEHKDALFLSL 285

Query: 234 RGKPLNPGVFQRYIRQL-RRYLGLPLSTTA------HTLRHSFATHLLSNGGDLRSIQSI 286
           + K +      R IR + ++Y  L L TTA      H LR + AT L+  G  +  +Q++
Sbjct: 286 QRKRMTT----RAIRNMVKKYTALVLDTTAKNGYSPHKLRATAATSLIQQGFSIYDVQNL 341

Query: 287 LGHFRLSTTQIYT 299
           L H  ++TTQ+Y 
Sbjct: 342 LDHDDVTTTQLYA 354


>gi|317474386|ref|ZP_07933660.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316909067|gb|EFV30747.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 486

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 70/170 (41%), Gaps = 31/170 (18%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI---RIVPLLPSVRKAILEY 213
           +  L+  Y  G+R  + + L   NI+DD    R++ + DK    + + L+PS +  I +Y
Sbjct: 272 NCFLFAFYCGGMRAGDLIQLRGNNIIDDNGIWRVRYRMDKTSTPKSIKLIPSAKAIIEKY 331

Query: 214 YDL---------------CPF----------DLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            +L                P+           L   I+  L + + GK     +  +Y+ 
Sbjct: 332 INLNQRNSNYIFPLLDNEAPYAKATTWEEKEQLPYEIKTRLLQTVNGKN---SLLNKYLN 388

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +L    G+    + H  RHSFA        ++  I ++LGH  +  T+ Y
Sbjct: 389 KLAAMAGIEKKISMHIARHSFANIAREKEANVYDISNVLGHSNIDITKGY 438


>gi|281491739|ref|YP_003353719.1| site-specific tyrosine recombinase Xers [Lactococcus lactis subsp.
           lactis KF147]
 gi|281375453|gb|ADA64963.1| Site-specific tyrosine recombinase XerS [Lactococcus lactis subsp.
           lactis KF147]
          Length = 351

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 131/323 (40%), Gaps = 51/323 (15%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRR---TQ 81
           LS+ ++  Y  D R++L +L           ++IT+Q +  ++  E+  F+   R     
Sbjct: 34  LSEASIYEYCLDFRKYLQWLLDGSITNHNQIKEITLQELENVTKHELEDFVLHERLRLES 93

Query: 82  KIGDRS----LKRSLSGIKSFLKYLKKRKITTESNILNMRNL-------KKSNSLP-RAL 129
           K G  +    L R+++ IKS   YL ++      N    RN+       KKS +L  RA 
Sbjct: 94  KCGSNAHTSALNRTIAAIKSLYNYLSEQTEDEHGNTYMTRNVSRLIHIRKKSETLHYRAA 153

Query: 130 NEKQALTLVDNV------LLHTSHETKWIDARNS---------AILYLLYGCGLRISEAL 174
             +  L L D        + H    +    AR S         AIL L    GLR +E +
Sbjct: 154 QLEGKLFLGDETKDFLEFVEHNYENSVSNRARTSFKKNKIRDLAILSLFLSSGLRCAELV 213

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---- 230
            +   ++  +   + +  K  K  +VP+     K I +Y+ +    ++  IQ        
Sbjct: 214 GINLDDLNLEAGKVSVMRKEGKKDVVPIAQFSHKYINDYF-VIRSSIDTEIQAFFITDYD 272

Query: 231 ---RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
              R I    +N  V  +Y    +      +  T HTLRH+FAT L +       + + L
Sbjct: 273 QKIRKISNASINKLV-AKYSEAYK------VRVTPHTLRHTFATRLYNVSHSQVLVSNQL 325

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH     T++YT++ S    D +
Sbjct: 326 GHSSTKPTELYTHIVSAEAKDAL 348


>gi|126661716|ref|ZP_01732715.1| tyrosine type site-specific recombinase [Flavobacteria bacterium
           BAL38]
 gi|126625095|gb|EAZ95784.1| tyrosine type site-specific recombinase [Flavobacteria bacterium
           BAL38]
          Length = 408

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 21/153 (13%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD 215
            L+ C  G    +A+ LT +NI+ D + TL I+    K      VP+LP V K I +Y  
Sbjct: 256 FLFSCYTGYAPVDAIKLTRKNIIQDTEKTLWIKANRQKTNTKANVPILPPVLKIINKY-- 313

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
                   +  LP    I  + +N      Y++++   +GL    T +  RH+FAT + L
Sbjct: 314 ----QFYGDTLLP---KISNQKMNA-----YLKEIADIIGLEKKLTWYVARHTFATTVTL 361

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            NG  + ++ ++LGH  +  TQ Y  +  +N G
Sbjct: 362 GNGIRIENVSAMLGHTTIKQTQHYAKILDQNVG 394


>gi|256393898|ref|YP_003115462.1| integrase family protein [Catenulispora acidiphila DSM 44928]
 gi|256360124|gb|ACU73621.1| integrase family protein [Catenulispora acidiphila DSM 44928]
          Length = 354

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 107/269 (39%), Gaps = 13/269 (4%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T  +Y  D +Q+  + A +  +      +R    T       + R +     +L R +S 
Sbjct: 72  TASAYAVDLKQWFAWCALFDVDPF--DAVRAHVDTWAVHLADEGRARPA---TLARKISA 126

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +++F  Y      T+ S +  +++  K+  LPR   + Q L                   
Sbjct: 127 VRNFYAYAVDSGYTSSSPV-PIKD--KALHLPRVSRKSQTLGPDREESAAMLEAAAQRGV 183

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILE 212
           R+ A++ +L   GLR+SE   +  +++   +    +R++ KG + +   + P     +  
Sbjct: 184 RDEAVVAVLLYQGLRVSELCGINVEDLSSQRGHRVVRLRRKGGEEQDQAIAPPAAGCLDA 243

Query: 213 YYDLCPFDLNLNI---QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +      D          P+F G  G  L     +  +    R  G+    + H+LRH+ 
Sbjct: 244 WLAERARDSAFGAVPASGPVFVGPEGARLTRYQVEWIVESCARAAGVEKKISPHSLRHAC 303

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            T LL  G  LR IQ  +GH   +TT+ Y
Sbjct: 304 TTMLLDAGVPLRDIQVYMGHANSATTERY 332


>gi|228988991|ref|ZP_04149022.1| Integrase-recombinase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228770753|gb|EEM19287.1| Integrase-recombinase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 390

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 67/153 (43%), Gaps = 10/153 (6%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           N  IL  L   G RI E  +   +++  D +  L++ GKG+K+R + +   + + I E  
Sbjct: 218 NYTILLALASTGARIQELCTTRVKDLHYDGKHWLKVTGKGNKVRELFISEHLYQCICEMR 277

Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266
                   L+   + PLF   RG   N  +    +  + +   L          TAHT R
Sbjct: 278 QRRGLKTILDRGDESPLFINQRGNFYNSKMLSNQVTDMIKKTDLEFLQFRENPVTAHTFR 337

Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
           H+FA   +  G  DL  +   LGH  + TT+IY
Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370


>gi|313674555|ref|YP_004052551.1| integrase family protein [Marivirga tractuosa DSM 4126]
 gi|312941253|gb|ADR20443.1| integrase family protein [Marivirga tractuosa DSM 4126]
          Length = 417

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 143/336 (42%), Gaps = 62/336 (18%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKL-----------------TLQSYECDTRQFLIFL 50
           E++S E+++   N L NLE E+ ++ L                 TLQ Y+   R F  FL
Sbjct: 91  ELISAEIIR---NKLFNLEEEQQITLLSASKYHYDQNIHNFSTGTLQHYKVTERYFERFL 147

Query: 51  AFYTEEKITIQTIRQLSY-------TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           +  T++ ++   I ++ Y         +RA+  K   + IG   + + +   +  L Y  
Sbjct: 148 S--TKKNLSDIAIEKVDYKFLLDFEAFLRAWKPKDHQKPIGHNGIMKHMCRFRKVLNYAY 205

Query: 104 KRKITTESNILNMR-NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID-ARNSAIL- 160
           K    T++       + +KS      + E  A+            E K +D AR   I  
Sbjct: 206 KMDWITDTPFKKYHISYEKSTRTYLTVEELSAI------------EVKELDIARLEQIRD 253

Query: 161 YLLYGC--GLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRI---VPLLPSVRKAILEYY 214
             ++ C  GL   +  +L+  +I+   +  + IQ K  K      VPLLP   + I +Y 
Sbjct: 254 IFIFSCYTGLSYIDLFNLSKDHIVIGINGEKWIQYKRQKTSTPFSVPLLPKALELIEKYE 313

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL- 273
           D      N      L   +  +  N      Y++++    G+    T H  RH+FAT + 
Sbjct: 314 DHPKAKEN-----QLLPVVSNQKTNA-----YLKEIADLCGIKKQLTFHIARHTFATTVT 363

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTN-VNSKNGGD 308
           L+NG  + ++  +LGH +LSTTQIY   V +K G D
Sbjct: 364 LTNGVPMETVSKMLGHTKLSTTQIYAKVVENKIGTD 399


>gi|294778653|ref|ZP_06744075.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294447602|gb|EFG16180.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 430

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 69/159 (43%), Gaps = 35/159 (22%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------GDKIRIVPL---LP 204
           A L+  Y  GLR S+   LTP+N       +RI GK          G +IR+ PL     
Sbjct: 260 AFLFCCY-TGLRYSDFCQLTPENF------IRINGKRWLYFKSVKTGVEIRL-PLHLLFE 311

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           S    IL+ Y             P        P N  V  + +R+L    G+    T H 
Sbjct: 312 SRALGILDRY-------------PDIGSFAALPCNSEV-NKQLRKLAELCGIKKRITYHV 357

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            RH+ AT L+  G  + ++Q +LGH  + TTQIY+ V S
Sbjct: 358 SRHTCATLLVHQGVAITTVQKLLGHTSVKTTQIYSEVLS 396


>gi|332653262|ref|ZP_08419007.1| phage integrase [Ruminococcaceae bacterium D16]
 gi|332518408|gb|EGJ48011.1| phage integrase [Ruminococcaceae bacterium D16]
          Length = 410

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 2/69 (2%)

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-T 294
           +P+NP     ++++L +  GLP S   H LRH+FATH L++G D +++  ILGH + S T
Sbjct: 323 QPVNPNAAYDHLKKLLQQAGLP-SIRFHDLRHTFATHALASGVDAKTLSGILGHTQASFT 381

Query: 295 TQIYTNVNS 303
              YT+V  
Sbjct: 382 LDTYTHVTG 390


>gi|299821501|ref|ZP_07053389.1| integrase/recombinase [Listeria grayi DSM 20601]
 gi|299817166|gb|EFI84402.1| integrase/recombinase [Listeria grayi DSM 20601]
          Length = 314

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 92/218 (42%), Gaps = 15/218 (6%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S+   +   K+F  YL  +K    + + +   L++   + + L   +    +  +  +  
Sbjct: 90  SINSKIKAFKAFYNYLFSKKYIKVNPVADFSLLRQREEIRKTLEANE----IKKIANYYK 145

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
            +  +   R+  +  LL   GLRISEA+++   +I DD   + ++ K    RIV +  S+
Sbjct: 146 RKETFTAFRDLVLFQLLLDTGLRISEAINIKVPDIHDDYIVV-VETKNLTQRIVYISKSM 204

Query: 207 RKAILEYYDL---CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           ++ +  Y  +   C       IQ        G       FQ  +R   R   L    + H
Sbjct: 205 KQKLNSYISIRGECNHQYLFIIQ-------DGTKYTKYSFQESLRNAGRMCQLRKQVSPH 257

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             R ++A + + +G D  S+ S+LGH  L  T+ Y  +
Sbjct: 258 VCRRTYAKNAILSGMDAFSLASLLGHSSLEVTKRYVQI 295


>gi|332661998|ref|YP_004451467.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100]
 gi|332337495|gb|AEE54594.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 501

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 10/153 (6%)

Query: 158 AILYLLYGCGLRISEALSLTPQ--NIMDDQST---LRIQGKGDKIRIVPLLPSVRKAILE 212
            I+ L+  CGLR++E + L  +  N M +  T   L+ + K  + R +PL   + +A+ +
Sbjct: 29  VIILLMLDCGLRVTEVVQLQRKHFNFMQNTVTVASLKKRSKRLRTRSIPLSTRLLEALAD 88

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           Y+             P  +  +   L+  V  + I++    +  P     H LRH+FAT 
Sbjct: 89  YWPRIKDPEPDTYIFPAAKTSKALYLSRVVVWKRIKKYSGGVVHP-----HMLRHTFATR 143

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           ++  G D+R  Q +LGH    TT+IY +V  + 
Sbjct: 144 VVREGNDIRVAQKLLGHNSQLTTEIYLHVEDQE 176


>gi|229492025|ref|ZP_04385839.1| phage integrase family protein [Rhodococcus erythropolis SK121]
 gi|229321049|gb|EEN86856.1| phage integrase family protein [Rhodococcus erythropolis SK121]
          Length = 246

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 21/165 (12%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQ-GKGDKI-----RIVPLLP 204
           AR+ A+   LY  GLR  EA  L   ++  D+     L ++ GKG ++     R VP+L 
Sbjct: 63  ARDYALFRTLYHAGLRSEEAALLDLPDVHFDRGPFGKLHVRFGKGARMSGPRPRWVPMLD 122

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
            +   +L +     F  ++  + P    LF    G PL+ G  +  +R L    G P S 
Sbjct: 123 GL-DLVLRW-----FLTDVRPKFPDSPVLFADESGGPLHRGTIRNRLRYLMELEGRPRSE 176

Query: 261 --TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             + H LR + ATH    G DL +IQ +LGH+ + +T  Y   ++
Sbjct: 177 RFSPHALRRACATHNYERGVDLVAIQQLLGHWTVGSTMRYVRPSA 221


>gi|268589662|ref|ZP_06123883.1| site-specific recombinase, phage integrase family [Providencia
           rettgeri DSM 1131]
 gi|291314972|gb|EFE55425.1| site-specific recombinase, phage integrase family [Providencia
           rettgeri DSM 1131]
          Length = 328

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 19/145 (13%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
           N  +  L    G R  EA+ L  ++++ ++        G K RIVP+   V   +     
Sbjct: 181 NKKVAILCLSTGARWGEAVKLKREHVIQNKIRFTFTKTG-KARIVPISQEVADKVCTRKS 239

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
              F    N    +FR             ++I+ ++    +P     H LRH+FATH + 
Sbjct: 240 GLLFP---NTSYDMFR-------------KHIKTIKP--DMPQGQATHALRHTFATHFMM 281

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTN 300
           NGG + ++Q ILGH  L  T  Y +
Sbjct: 282 NGGSIITLQRILGHSTLQQTLTYAH 306


>gi|194466381|ref|ZP_03072368.1| integrase family protein [Lactobacillus reuteri 100-23]
 gi|194453417|gb|EDX42314.1| integrase family protein [Lactobacillus reuteri 100-23]
          Length = 359

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 6/163 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI+ L+ G G+R+SEA ++   ++   QS L +  KG +   VP+ P     I  Y 
Sbjct: 189 RDIAIIALILGTGVRVSEAANVNLGDLNLKQSLLDVTRKGGQRDSVPIAPWAITYIQTYQ 248

Query: 215 DLCPFDLN-LNIQLPLFRGIRGKP---LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            +     + L      F  +  K    +     ++ +++     G PL  T H LRH+ A
Sbjct: 249 AIRAQRYHALKRDTAFFLTVYHKQTRRMTANAIEKMVKKYSTAFGHPL--TPHKLRHTLA 306

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           + +     D   +   LG    S T +YT+V+ K   D + EI
Sbjct: 307 SEMYEVTKDQVLVAQQLGQKGTSATDLYTHVDQKQQRDALKEI 349


>gi|55980996|ref|YP_144293.1| DNA integration/recombination/invertion protein [Thermus
           thermophilus HB8]
 gi|55772409|dbj|BAD70850.1| DNA integration/recombination/invertion protein [Thermus
           thermophilus HB8]
          Length = 391

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 59/280 (21%), Positives = 118/280 (42%), Gaps = 35/280 (12%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKK 121
           ++++    +RA + +        R++ R L  +K+  +   + ++   +    +R  L K
Sbjct: 120 LQEVKPVHVRAAVDRVAEAGYAPRTVGRVLMRLKALFREALRLELVARNPAEAVRLRLPK 179

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
                RAL  ++   L++      S +        + +L L+   GLR  EAL+L  ++I
Sbjct: 180 GEKTARALEPQEVARLLETAEASRSKDM-------ALLLRLMLETGLRRGEALALQWRDI 232

Query: 182 MDDQSTLRI-----QGKGDKIRIVPLLPSVRKAILEYYD---------------LCPFDL 221
             +   L +     + +G      P  P+ ++ +                    L P ++
Sbjct: 233 DLEAGELTVWRSWTKARGKGAFSEPKTPTAKRKVPLPRGLLLRLKARREELLERLTPEEV 292

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
           +    L L  G+  KP++P  F  Y+R+L    GL      H LRH++AT  LS G  L 
Sbjct: 293 D---GLFLVGGV--KPVDPDAFNHYLRRLAERAGLG-RVRVHDLRHTWATLALSRGVPLE 346

Query: 282 SIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPS 320
            +   LGH   + T  +Y ++  +    W++++ +  +P+
Sbjct: 347 VVSERLGHASPTITLNVYRHLLEEERRGWVLDLEELLYPA 386


>gi|317505585|ref|ZP_07963495.1| integrase [Prevotella salivae DSM 15606]
 gi|315663297|gb|EFV03054.1| integrase [Prevotella salivae DSM 15606]
          Length = 429

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 14/159 (8%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP--LLPSVRKAILEYYDLC 217
            ++ C  GL   +  +L P+NI+       I  K  K  +    LL  + K+I+  Y   
Sbjct: 268 FVFSCFTGLAYIDVYNLAPENIVTLNGKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSGK 327

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            +         LF  +  + LN      Y++++    G+  + T H  RH+FAT  LS G
Sbjct: 328 TYR-----DGKLFPMLTNQKLNS-----YLKEIADICGIKKNLTFHLARHTFATMSLSKG 377

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + S+  +LGH  + TTQIY  + +K     M E+ D+
Sbjct: 378 VPIESVSKMLGHTNIKTTQIYARITNKKIEHDMDELADK 416


>gi|315268238|gb|ADT95091.1| integrase family protein [Shewanella baltica OS678]
          Length = 318

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 23/144 (15%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I+ +    G R SEA +LT   ++DD+    I  K  K R +P+    R           
Sbjct: 182 IVKICLSTGARWSEAQNLTSSQLLDDRINF-INTKNGKNRTIPITREFRA---------- 230

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNG 277
                  +LP   G     L    + +++  L+   + LP    +H LRH+FA+H + NG
Sbjct: 231 -------ELPNGNG----RLFADCYHQFLAVLKSSGIVLPKGQASHVLRHTFASHFVMNG 279

Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301
           G++ ++Q ILGH  +  T  Y ++
Sbjct: 280 GNILTLQKILGHGSIQMTMRYAHL 303


>gi|296163766|ref|ZP_06846469.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295885987|gb|EFG65902.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 335

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 76/182 (41%), Gaps = 6/182 (3%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            LP AL  +    L+      T H       R+ A+L LL   GLR  E   L   +I  
Sbjct: 147 GLPCALERRDVQRLLAACDRRTHH-----GQRDFAMLMLLARLGLRAGEVRMLKLDDIDW 201

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
               L ++GKG +I  +PL   V +A+  Y      D      + +      + L+    
Sbjct: 202 RAGELVVRGKGQRIERLPLPADVGQALASYLRRGRPDTAQGRTVFVRTRAPHRALSSAGV 261

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              +       GLP   +AH LRH+ AT ++ +G  L  +  +L H RL TT IY  V+ 
Sbjct: 262 TEAVAAAASRAGLP-HMSAHRLRHTLATQMVRSGVALPEVAQVLRHRRLMTTSIYAKVDR 320

Query: 304 KN 305
           + 
Sbjct: 321 EG 322


>gi|240171150|ref|ZP_04749809.1| site-specific recombinase [Mycobacterium kansasii ATCC 12478]
 gi|296165403|ref|ZP_06847944.1| site specific recombinase XerD [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295899294|gb|EFG78759.1| site specific recombinase XerD [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 366

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 129/318 (40%), Gaps = 42/318 (13%)

Query: 17  ERQNWLQNLEIERGLSKL---TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI-- 71
           +R +W +    +R   K    TLQ+Y    RQ    +A         Q + +L   ++  
Sbjct: 20  QRPSWFRAFLTDRATRKPSPHTLQAY----RQDFDAIASAITGADPGQDLSRLDPLDLTK 75

Query: 72  ----RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
               +AF +   + +    S++R  S   +   YL   ++   + +  +   K + +LPR
Sbjct: 76  DALRQAFAAYAGSHEAA--SIRRCWSTWNTLCTYLYTTELLPGNPMQVIGQPKPAKALPR 133

Query: 128 ALNEKQALTLVDNVLLHTSHE--TKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMD 183
           +L  + A  L+  +    +++  T W + R+ AI+      GLR +E    ++    + D
Sbjct: 134 SLPAEAAEALITAIEAPAANKRATDWPE-RDRAIILTALLAGLRAAELRGANIGDLRLSD 192

Query: 184 DQSTLRIQGKGDKIRIVPLLPSV----------RKAILEYYDLCPFDLNLNIQLP----L 229
               LR++GKG K R VP+  ++          R A            N   Q P    L
Sbjct: 193 GGGVLRVRGKGGKHRSVPIEQALVDVLNSYLTTRAARFPATTRGRSGQNPRPQWPASAAL 252

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRY-LGLP-----LSTTAHTLRHSFATHLLSNGGDLRSI 283
           F G  G  +  G  Q   R LR + L  P          H LRH++AT L      + ++
Sbjct: 253 FVGRDGARITRGALQ--YRVLRAFNLAGPDAQRTPGAMVHALRHTYATELAGANISVYTL 310

Query: 284 QSILGHFRLSTTQIYTNV 301
             +LGH  ++T+Q Y   
Sbjct: 311 MKLLGHESMATSQRYVTA 328


>gi|327395182|dbj|BAK12604.1| phage integrase [Pantoea ananatis AJ13355]
          Length = 327

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 136/315 (43%), Gaps = 46/315 (14%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL ER  WL+ L  + G +  TL +Y         + AF +  +I  + +R   + ++ A
Sbjct: 11  LLAER--WLKLLS-DLGRAPATLTAYRA---ALCHYFAFCSRNRIEPEKVR---FDDMAA 61

Query: 74  FISKRRTQKIG------DRSLKRSLSGIK---SFLKYLKKRKIT------TESNILNMRN 118
           +I   R Q  G        +L+  LS ++    FL YL   K+       T   + + R 
Sbjct: 62  YI---RPQLPGMPFPAASATLQLRLSAVRLWYDFLMYLDLCKVNPLPRSGTPGMLCSARG 118

Query: 119 L-KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           L  +   LPR  ++ Q         L  +H       R+  +L L Y   LR SE  +L+
Sbjct: 119 LVPRIVKLPRIPDDAQ-------WQLFQAHAAD-SPLRDRLMLALTYCGALRRSEVTALS 170

Query: 178 PQNIMDDQSTLRIQGKGDK---IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI- 233
             ++      +R++ +  K    RIV   P++   +  +  L    L+  ++  LFR   
Sbjct: 171 TDDLDFAHRLIRVRAETTKNRHERIVCYSPALTPVLAAH--LLQMKLSGMVKGALFRSES 228

Query: 234 ---RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
              +G PL+   + + +R+     GLP  +T HT RH   THL   G  L  + +  GH 
Sbjct: 229 DRNQGAPLSYWSWSKTVRKWALESGLPDIST-HTFRHLRLTHLARAGWKLHELATYAGHR 287

Query: 291 RLSTTQIYTNVNSKN 305
              TTQIY +++ ++
Sbjct: 288 DPRTTQIYIHLSGRD 302


>gi|312134834|ref|YP_004002172.1| integrase family protein [Caldicellulosiruptor owensensis OL]
 gi|311774885|gb|ADQ04372.1| integrase family protein [Caldicellulosiruptor owensensis OL]
          Length = 400

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G P++P  F+R   ++R   GL  S   H LRH++AT LL      + +Q +LGH  +ST
Sbjct: 307 GTPIDPRNFERLFYRIREKAGLDKSVNFHALRHTYATRLLEANEHPKVVQELLGHKDIST 366

Query: 295 T-QIYTNV 301
           T  IY++V
Sbjct: 367 TLNIYSHV 374


>gi|307322494|ref|ZP_07601844.1| integrase family protein [Sinorhizobium meliloti AK83]
 gi|306891863|gb|EFN22699.1| integrase family protein [Sinorhizobium meliloti AK83]
          Length = 90

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/47 (51%), Positives = 31/47 (65%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           GL    T H+LRH+FA HLL  G D+R+IQ +LGH  L+TT  Y  +
Sbjct: 13  GLSEPGTPHSLRHAFAVHLLEAGSDVRTIQLLLGHRSLATTAHYLRI 59


>gi|237805544|ref|ZP_04592248.1| Phage integrase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331026651|gb|EGI06706.1| Phage integrase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 153

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 14/120 (11%)

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG------ 241
           L++ GKG K+R +P+ P     I +Y +     L  N ++PLF  +RGK    G      
Sbjct: 22  LKVHGKGGKVRYLPMHPVAAGRIHQYLESSGHHL-ANRKVPLFIPLRGKLTGTGITANGI 80

Query: 242 --VFQRYIRQLRRYL-GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             V   Y ++    + GL +    H LR + AT+ L +  D+  +Q  LGH  +STT+IY
Sbjct: 81  YTVVTAYAKKAEIEVDGLGV----HGLRATAATNALEHEADIAKVQLWLGHANISTTKIY 136


>gi|229107361|ref|ZP_04237229.1| Tyrosine recombinase [Bacillus cereus Rock3-28]
 gi|228676090|gb|EEL31067.1| Tyrosine recombinase [Bacillus cereus Rock3-28]
          Length = 358

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 128/304 (42%), Gaps = 42/304 (13%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK---------RRTQKIGD 85
           TL +Y  D R F  +L   +E+ I ++ I+ +S++++     K         +  Q + +
Sbjct: 43  TLLNYVYDFRVFFNWLL--SEQIIELKPIKDISFSDLENLKKKDVENFMRFLKLQQNMQN 100

Query: 86  RSLKRSLSGIKSFLKYL------------------KKRKITTESNILNMRNLKKSNSLPR 127
            S+ R +S +KS  KYL                   K +I  +   LN R  +  + +  
Sbjct: 101 SSVNRKISALKSLFKYLTSLSENEDGECYFYRNVMAKIEIHKDKETLNARAKRMRSKIFH 160

Query: 128 ALNEKQALTLV--DNVLLHTSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIM 182
             ++++ L  V  ++    T H+  +      R+ AIL L  G G+R+SE  +L  ++I 
Sbjct: 161 NDDDQEFLDYVKYEHEKSLTKHQLFYFLRDKNRDVAILSLFLGSGVRVSELAALRMEDIN 220

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKP 237
             +  + +  KG+K   V + P     + +Y ++      P     N+ L  ++    +P
Sbjct: 221 IKERLIDVIRKGNKEDSVWITPIALNDLEKYMEIRDNKYVPGKELKNVFLSKYKHT-AQP 279

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+    Q  + +  +  G  +S   H LRH+ A  L     D   +   LGH    T  +
Sbjct: 280 LSVRAIQDIVEKYTKAYGKRMS--PHKLRHTLANKLYMEEKDSLQVMQQLGHTSQDTALL 337

Query: 298 YTNV 301
           YT +
Sbjct: 338 YTQL 341


>gi|255657789|ref|ZP_05403198.1| tyrosine recombinase XerD [Mitsuokella multacida DSM 20544]
 gi|260849979|gb|EEX69986.1| tyrosine recombinase XerD [Mitsuokella multacida DSM 20544]
          Length = 265

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 72/165 (43%), Gaps = 16/165 (9%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL-----LPSVRKA 209
           R+ A+  L+   GLR+ E + L   +I++         KG +  I+PL     L S++  
Sbjct: 108 RDRAMFALMAYNGLRVGEVVGLDMDDILNGHRLRLRNTKGKRDAIIPLVHPRVLSSLKAY 167

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           I E     P          LF   RG  ++     ++IR      GL     AH+LR  F
Sbjct: 168 IKERKSESP---------ALFLNHRGVRMSCNGLAQFIRNEFHDNGLAFH--AHSLRRYF 216

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           A  L  NG  ++ IQ  + H  ++TT  Y N++     D + E+Y
Sbjct: 217 ANTLSRNGIPVQDIQVAMRHASITTTMGYLNIDEDKTRDILREVY 261


>gi|222529021|ref|YP_002572903.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222455868|gb|ACM60130.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 400

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G P++P  F+R   ++R   GL  S   H LRH++AT LL      + +Q +LGH  +ST
Sbjct: 307 GTPIDPRNFERLFYRIREKAGLDKSVNFHALRHTYATRLLEANEHPKVVQELLGHKDIST 366

Query: 295 T-QIYTNV 301
           T  IY++V
Sbjct: 367 TLNIYSHV 374


>gi|304382578|ref|ZP_07365072.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
 gi|304336203|gb|EFM02445.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
          Length = 387

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 85/186 (45%), Gaps = 34/186 (18%)

Query: 131 EKQALTL--VDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQS 186
           E+ ALT   V  +L +  H +      N   L  L GC  GL  S+   L     MDD  
Sbjct: 179 ERNALTADDVQKLLAYRPHRS----TENHCRLIFLLGCFTGLAFSDLKKLR----MDDVY 230

Query: 187 TLR--------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           TL          + K     IVPLLP + + IL         ++   +  LF   R  P 
Sbjct: 231 TLSDGRRYISLCRTKTQNRSIVPLLP-IAEEILAI-------VSHGRREGLF--FREFPC 280

Query: 239 NPGVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTT 295
           N   F R I+++    GLP  T  T+HT RH+FAT + L NG  + ++  +LGH  +STT
Sbjct: 281 NSN-FNRTIQEISIKAGLPPHTQATSHTARHTFATTICLENGLPIETVSKMLGHRFISTT 339

Query: 296 QIYTNV 301
           +IY  V
Sbjct: 340 EIYARV 345


>gi|167754410|ref|ZP_02426537.1| hypothetical protein ALIPUT_02704 [Alistipes putredinis DSM 17216]
 gi|167659035|gb|EDS03165.1| hypothetical protein ALIPUT_02704 [Alistipes putredinis DSM 17216]
          Length = 379

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 70/164 (42%), Gaps = 28/164 (17%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
            L+ C  GLR S+ + LT  ++           +G+  RI+      + +  EY D+ P 
Sbjct: 232 FLFSCLTGLRRSDVIRLTWGDV---------HQQGEFTRII--FKQKKTSGQEYLDIPP- 279

Query: 220 DLNLNIQLPLFRGIRGKPL--------NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
                 Q     G RGK          +P      I++     G+    T H  RH+FA 
Sbjct: 280 ------QAAELMGERGKDAEHIFPNIHSPSCTNETIKRWVLRAGIHKDITFHCGRHTFAV 333

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            +L  G D+ ++  +LGH  LSTTQIY  V  KN    + +I D
Sbjct: 334 MMLDLGTDIYTVSKLLGHRELSTTQIYAKVLDKNKQAAVAKIPD 377


>gi|293433077|ref|ZP_06661505.1| integrase bacteriophage origin [Escherichia coli B088]
 gi|291323896|gb|EFE63318.1| integrase bacteriophage origin [Escherichia coli B088]
          Length = 346

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 24/144 (16%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           ++ +    G R +EA +L    I   + T  ++ KG + R +PL                
Sbjct: 201 VVKICLATGARWNEAATLKSSQITGGKVTF-VKTKGKRNRTIPL---------------- 243

Query: 219 FDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSN 276
            D  L  +LP  +G +  KP     +  +   L R  + LP     H LRH+FA+H + N
Sbjct: 244 -DDELLSELPETKGALFPKP----CYNAFRSALERAGIELPSGQLTHVLRHTFASHFMMN 298

Query: 277 GGDLRSIQSILGHFRLSTTQIYTN 300
           GG++  +Q ILGH  ++ T  Y +
Sbjct: 299 GGNILVLQKILGHADITMTMRYAH 322


>gi|194430310|ref|ZP_03062803.1| resolvase [Escherichia coli B171]
 gi|194411640|gb|EDX27969.1| resolvase [Escherichia coli B171]
          Length = 253

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 40/182 (21%)

Query: 153 DARNSAILYLLYGCGLRISEALSLT-------PQNIMDDQSTL--------RIQGK---G 194
           D R   +L  L+  G RI+EAL+LT       P       +TL        R  G+   G
Sbjct: 50  DLRRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRTPAG 109

Query: 195 DKI-RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR 251
            +  R+VPL  S   + L+        +   +++PL R  +  G+     +++   R +R
Sbjct: 110 QQTHRLVPLSDSWYVSQLQ-------TMVATLKIPLERRNKRTGRTEKARIWEVTDRTVR 162

Query: 252 RYLG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            ++G              +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT
Sbjct: 163 TWIGEAVAAAATDGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYT 222

Query: 300 NV 301
            V
Sbjct: 223 KV 224


>gi|160894142|ref|ZP_02074920.1| hypothetical protein CLOL250_01696 [Clostridium sp. L2-50]
 gi|160894145|ref|ZP_02074923.1| hypothetical protein CLOL250_01699 [Clostridium sp. L2-50]
 gi|156864175|gb|EDO57606.1| hypothetical protein CLOL250_01696 [Clostridium sp. L2-50]
 gi|156864178|gb|EDO57609.1| hypothetical protein CLOL250_01699 [Clostridium sp. L2-50]
          Length = 351

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 111/251 (44%), Gaps = 25/251 (9%)

Query: 61  QTIRQLSYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           + ++ +   +IR +++    K+++ K+   +++R LS   SF  +L+      +S +  +
Sbjct: 110 KDVKHIVTDDIRGYLTEYQEKKKSSKVTIDNIRRILS---SFFSWLEDEDYILKSPVRRI 166

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             +K   ++    +++    + DN            + R+ AI+ +L   G+R+ E + L
Sbjct: 167 HRVKTGTNIKETYSDEALELMRDNC----------TELRDLAIIDMLASTGMRVGEMVLL 216

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG- 235
              +I  ++    + GKG K R+V    +  K  L+ Y     D N      LF  ++  
Sbjct: 217 NRDDIDFNERECVVFGKGSKERVV-YFDARTKIHLQNYLESRRDNN----PALFVSLKSP 271

Query: 236 -KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            K L  G  +  +R+  + LGL      H  R + AT  +  G  +  +Q +LGH ++ T
Sbjct: 272 HKRLKIGGVEVRLREFGKQLGLN-KVHPHKFRRTLATMAIDKGMPIEQLQQLLGHRKIDT 330

Query: 295 TQIYTNVNSKN 305
           T  Y  V   N
Sbjct: 331 TLQYAMVKQSN 341


>gi|323692724|ref|ZP_08106953.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
 gi|323503278|gb|EGB19111.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
          Length = 289

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 123/300 (41%), Gaps = 36/300 (12%)

Query: 2   EGNNLP-EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           +G N P EI S   + E QN+L   E  R     T+  Y  D + F  FL      K  +
Sbjct: 3   QGQNKPDEIFSCTRIAEFQNYLHQEERSRN----TITKYIRDLKVFFTFLDGQPMAKEAL 58

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
              +            K  TQ     S+   L+ +  FL +L       E   L ++ LK
Sbjct: 59  LDWK------------KHLTQTHAPASVNSMLASVNKFLDWL-------ELPGLKVKPLK 99

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               +    N K+ LT  +   L  + E +  + R S +L  +   G+R+SE   +T ++
Sbjct: 100 IQRQI--FSNPKKELTTEEYRRLIKAAENRQ-NNRLSLLLQTICSTGIRVSELKFITAES 156

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
               ++    +GK    RI+ L P + +A+  Y      D  +     +F    G PL+ 
Sbjct: 157 AKTGRAEADCKGK---TRIIFLPPDLCRALRHYCRERGIDAGI-----IFCTRNGCPLDR 208

Query: 241 GVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               + ++ L    G+ P     H LRH FA    +   DL  +  +LGH  +STT+IYT
Sbjct: 209 SNIWKDMKMLCDSAGVEPGKVFPHNLRHLFARTYYALEKDLSRLADLLGHSNVSTTRIYT 268


>gi|254250671|ref|ZP_04943990.1| Phage integrase [Burkholderia cenocepacia PC184]
 gi|124879805|gb|EAY67161.1| Phage integrase [Burkholderia cenocepacia PC184]
          Length = 578

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 129/319 (40%), Gaps = 65/319 (20%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +ERG  LS LT +    D   +  F+   T  +  +  +R     + R F     +  + 
Sbjct: 258 VERGRALSSLTTE----DALAYRAFIRRPTPHERWVGPVRPRGAPDWRPF-----SGALS 308

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSL--PRALNEKQAL---TL 137
            RS   +LS + +  ++L +++    +    + +R+ + + +L    A  E + L   T+
Sbjct: 309 ARSAAYTLSVLGALFRWLIEQRYVLANPFAGVKVRDTRGATALDTSHAFTEGEWLLVRTI 368

Query: 138 VDNV-----LLHTSHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDD---QS 186
            D +      +  + ++ W  A    + ++L   Y  GLR SE +  T  +I  D    +
Sbjct: 369 ADGLEFGKRPVKGAPQSGWTPAAAQRLRFILDFGYATGLRASELVGATLGDIETDAHGDA 428

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP------ 240
            L++ GKG K   V L P  R A+  Y         +  +LP+    R +P  P      
Sbjct: 429 WLKVIGKGGKAARVALPPLARTALDRYL--------VARRLPVTPA-RWRPDTPLIPRVA 479

Query: 241 -------------GVFQRYIRQLRRYLGLPLSTTAHTLR--------HSFATHLLSNGGD 279
                         V QR+  Q    +       AH LR        H+ ATH L+ G +
Sbjct: 480 EDDAAAITSVRLWKVMQRFFAQTADAVEADHPALAHKLRQASPHWMRHTHATHALARGAE 539

Query: 280 LRSIQSILGHFRLSTTQIY 298
           L +++  L H  +STT IY
Sbjct: 540 LTTVRDNLRHASISTTSIY 558


>gi|228931343|ref|ZP_04094272.1| Tyrosine recombinase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228828346|gb|EEM74052.1| Tyrosine recombinase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 361

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 127/304 (41%), Gaps = 42/304 (13%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK---------RRTQKIGD 85
           TL +Y  D R F  +L   +E+ I ++ I+ +S++++     K         +  Q + +
Sbjct: 43  TLLNYVYDFRVFFNWLL--SEQIIELKPIKDISFSDLENLKKKDVENFMRFLKLQQNMQN 100

Query: 86  RSLKRSLSGIKSFLKYL------------------KKRKITTESNILNMRNLKKSNSLPR 127
            S+ R +S +KS  KYL                   K +I  +   LN R  +  + +  
Sbjct: 101 SSVNRKISALKSLFKYLTSLSENEEGECYFYRNVMAKIEIHKDKETLNARAKRMRSKIFH 160

Query: 128 ALNEKQALTLV--DNVLLHTSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIM 182
             ++++ L  V  ++    T H+  +      R+ AIL L  G G+R+SE   L  ++I 
Sbjct: 161 NDDDQEFLNYVKYEHEKSLTKHQLFYFLRDKNRDVAILSLFLGSGIRVSELADLRMEDIN 220

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKP 237
             +  + +  KG+K   V + P     + +Y ++      P     N+ L  ++    +P
Sbjct: 221 LKERLIDVIRKGNKEDSVWITPIALNDLEKYMEIRDNKYAPGKELKNVFLSKYKHT-AQP 279

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+    Q  + +  +  G  +S   H LRH+ A  L     D   +   LGH    T  +
Sbjct: 280 LSVRAIQDVVEKYTKAYGKRMS--PHKLRHTLANKLYMEEKDSLQVMQQLGHTSQDTALL 337

Query: 298 YTNV 301
           YT +
Sbjct: 338 YTQL 341


>gi|227326878|ref|ZP_03830902.1| putative integrase [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 325

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 23/145 (15%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
            +++ +    G R SEA  L    ++  + T  I  KG + R VP+ P       E Y L
Sbjct: 182 GSVVRICLATGARWSEAQELKQSQLVPYRVTY-INTKGKRNRTVPISP-------ELYQL 233

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR-YLGLPLSTTAHTLRHSFATHLLS 275
            P               RG+  +P  +  + + L+R  + LP     H LRH+FA+H + 
Sbjct: 234 LPRR-------------RGQLFSP-CYDAFRQALKRSQIDLPEGQLTHVLRHTFASHFMM 279

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTN 300
           NGG++  ++ ILGH  +  T  Y +
Sbjct: 280 NGGNILVLKDILGHTSIQMTMRYAH 304


>gi|220683971|gb|ACL80793.1| putative transposase [Vibrio tasmaniensis]
          Length = 506

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 41/73 (56%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           G  Q+ ++ + +   +    + H+ RH FATHLL  G DLRS+Q++LGH  L+TT  YT 
Sbjct: 70  GGIQKTMKLVLKECDIQKHASPHSPRHCFATHLLEQGLDLRSLQTLLGHASLNTTARYTR 129

Query: 301 VNSKNGGDWMMEI 313
           +      D  M I
Sbjct: 130 ITQIKQRDAAMAI 142


>gi|301311630|ref|ZP_07217556.1| putative truncated integrase [Bacteroides sp. 20_3]
 gi|300830371|gb|EFK61015.1| putative truncated integrase [Bacteroides sp. 20_3]
          Length = 312

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 16/151 (10%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYY 214
           A ++ LY CGLR  +   LT +N+      L+ +    KG       ++P +   +L   
Sbjct: 160 AFIFCLY-CGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIP-LNDGLLSII 217

Query: 215 DLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
              P D N L   LP +              + +++  +  G+    + H  RHSFA ++
Sbjct: 218 GEAPADKNCLIFDLPTYESC----------CKSVKRWVKRAGIDKHISWHCARHSFAVNI 267

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           L+NG +++++ S+LGH  L  T+ YT    K
Sbjct: 268 LNNGANIKTVASLLGHSGLKHTEKYTRAVDK 298


>gi|294673638|ref|YP_003574254.1| prophage PRU01 site-specific recombinase [Prevotella ruminicola 23]
 gi|294472192|gb|ADE81581.1| prophage PRU01, site-specific recombinase, phage integrase family
           [Prevotella ruminicola 23]
          Length = 381

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 18/113 (15%)

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+LP    A+LE YD          +LP+   I  + LN      Y+  ++  L +    
Sbjct: 282 PILPPAL-AVLEKYDF---------KLPI---ISNQKLND-----YLHLIQDTLDIRNEV 323

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           T H  RHSFAT +L+ G  +  ++ +LGH  ++TTQIY  +  KN  D + EI
Sbjct: 324 TCHIGRHSFATLMLTYGIPIEKVKRMLGHKNIATTQIYAKILKKNVEDSVNEI 376


>gi|283769290|ref|ZP_06342191.1| site-specific recombinase, phage integrase family [Bulleidia
           extructa W1219]
 gi|283104100|gb|EFC05482.1| site-specific recombinase, phage integrase family [Bulleidia
           extructa W1219]
          Length = 327

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/264 (21%), Positives = 108/264 (40%), Gaps = 51/264 (19%)

Query: 61  QTIRQLSYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           + ++ +   +IR +++    K+++ K+   +++R LS   SF  +L+      +S +  +
Sbjct: 86  KDVKHIVTDDIRGYLTDYQKKKKSSKVTIDNIRRILS---SFFSWLEDEDYILKSPVRRI 142

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             +K   ++    +++    + DN            + R+ AI+ +L   G+R+ E + L
Sbjct: 143 HKVKTGTNIKETYSDEALELMRDNC----------TELRDLAIIDMLASTGMRVGEMVLL 192

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
              +I  ++    + GKG K R+V                  FD    I L  + G R  
Sbjct: 193 NRNDIDFNERECIVFGKGSKERVV-----------------YFDARTKIHLQNYLGSRTD 235

Query: 237 PLNPGVF---------------QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
             NP +F               +  +R+  + LGL      H  R + AT  +  G  + 
Sbjct: 236 D-NPALFVSLKSPHERLKIGGVEVRLREFGKQLGLQ-KVHPHKFRRTLATMAIDKGMPIE 293

Query: 282 SIQSILGHFRLSTTQIYTNVNSKN 305
            +Q +LGH ++ TT  Y  V   N
Sbjct: 294 QLQQLLGHRKIDTTLQYAMVKQSN 317


>gi|323146177|gb|ADX32415.1| phage integrase family protein [Cronobacter phage ENT90]
          Length = 345

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 93/228 (40%), Gaps = 28/228 (12%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F    R +++  R+L   L+  ++    L +       N L  R+++     P    E +
Sbjct: 114 FARSSRVKEVSPRTLNLELAYFRAVFNELGRLGEWKGENPL--RHIR-----PFRTEESE 166

Query: 134 ALTLVDNVLLHTSHETKWIDARN-SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
              L  + + H   E +  D  +   ++ +    G R SEA  L    I   + T  I+ 
Sbjct: 167 MAWLTHSQIAHLLAECRNSDQADLETVVKICLATGARWSEAEGLKKSQISKYKITY-IKT 225

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R VP+  S+ + I E           N    LF    G       F+  +   R 
Sbjct: 226 KGRKNRTVPITESIYRIIPE-----------NKTGRLFADCYG------AFRSALE--RT 266

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            + LP     H LRH+FA+H + NGG+L  +Q +LGH  +  T  Y +
Sbjct: 267 GIELPAGQLTHVLRHTFASHFMMNGGNLLVLQRVLGHTDIKMTMRYAH 314


>gi|227114983|ref|ZP_03828639.1| phage integrase family protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 328

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 94/226 (41%), Gaps = 31/226 (13%)

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKKSNSLPRALNEKQALTL 137
           R  KI   ++ R LS  ++    L +      +N L ++R  K S S    L + Q   L
Sbjct: 117 REAKISPTTVNRELSYFRALFNELARLGEWNAANPLESVRPYKTSESEMAFLQKDQIARL 176

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                LH    +K  D     I+ L    G R SEA  LT   +   + T   + KG + 
Sbjct: 177 -----LHECEASKAKDL--LLIVKLCLSTGARWSEAEELTRFQLSPYRVTF-TKTKGKRN 228

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGL 256
           R VP+  ++  A                 LP   G     L  G +  + + + R  + L
Sbjct: 229 RTVPISETLYNA-----------------LPRNNG----RLFSGCYNAFRKAMERADIVL 267

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           P    +H LRH+FA+H + NGG++  +Q ILGH  +  T  Y + +
Sbjct: 268 PAGQCSHVLRHTFASHFMMNGGNILVLQRILGHTDIKMTMRYAHFS 313


>gi|149926485|ref|ZP_01914746.1| Phage integrase [Limnobacter sp. MED105]
 gi|149824848|gb|EDM84062.1| Phage integrase [Limnobacter sp. MED105]
          Length = 393

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 77/187 (41%), Gaps = 42/187 (22%)

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-----------DDQSTLRIQGKGD 195
           H  +W+         L Y  GLRISE      Q  M           +D   LR+ GKG+
Sbjct: 199 HRLRWL-------FSLFYLGGLRISE----VSQGCMGDFYFRRAPDGNDLWWLRVVGKGN 247

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPG----------VF 243
           K R +P+       +L Y          ++  Q+PLF   R   +  G          +F
Sbjct: 248 KERQIPISGEFLDELLLYRSYVQVSGLPSVGEQVPLFGSARNFRIRVGRSSIHGTVTDLF 307

Query: 244 QRYIRQLR--------RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                +LR        R      S +AH LRH+  +H+ ++G DLR I+  LGH  +STT
Sbjct: 308 ADVAAKLRMQGDMHAVRRASQLESASAHWLRHTAGSHMANSGVDLRVIRDNLGHASISTT 367

Query: 296 QIYTNVN 302
            IY + +
Sbjct: 368 SIYLHTD 374


>gi|255011581|ref|ZP_05283707.1| putative integrase [Bacteroides fragilis 3_1_12]
 gi|313149409|ref|ZP_07811602.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313138176|gb|EFR55536.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 407

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 16/151 (10%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYY 214
           A ++ LY CGLR  +   LT +N+      L+ +    KG       ++P +   +L   
Sbjct: 255 AFIFCLY-CGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIP-LNDGLLSII 312

Query: 215 DLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
              P D N L   LP +              + +++  +  G+    + H  RHSFA ++
Sbjct: 313 GEAPADKNCLIFDLPTYESC----------CKSVKRWVKRAGIDKHISWHCARHSFAVNI 362

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           L+NG +++++ S+LGH  L  T+ YT    K
Sbjct: 363 LNNGANIKTVASLLGHNGLKHTEKYTRAVDK 393


>gi|218695473|ref|YP_002403140.1| Integrase [Escherichia coli 55989]
 gi|218352205|emb|CAU97951.1| Integrase [Escherichia coli 55989]
          Length = 333

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 21/134 (15%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G R SEA  L    ++  + T  ++ KG K R VP+ P                  L   
Sbjct: 202 GARWSEAEGLKQSQVLPGRITF-VKTKGKKNRTVPISP-----------------QLQAI 243

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           LP  RG    P     F   I+  R  + LP     H LRH+FA+H +  GG++  +Q I
Sbjct: 244 LPKKRGALFSPCYE-AFDAAIK--RAKIELPDGQLTHVLRHTFASHFMMRGGNILVLQKI 300

Query: 287 LGHFRLSTTQIYTN 300
           LGH  +  T  Y +
Sbjct: 301 LGHSDIKMTMRYAH 314


>gi|330831608|ref|YP_004394560.1| integrase domain-containing protein [Aeromonas veronii B565]
 gi|328806744|gb|AEB51943.1| Integrase domain protein SAM domain protein [Aeromonas veronii
           B565]
          Length = 409

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 89/207 (42%), Gaps = 54/207 (26%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMD--DQ-------STLRIQGKGDKIRIVPLLPS 205
           RN A++  L   GLRISEAL+L    + D  DQ       +TL++ GKG K R V +   
Sbjct: 197 RNLALIDTLIVSGLRISEALNLDVHQLPDPDDQCYAGLKSTTLKVVGKGKKSRDVRIPKR 256

Query: 206 VRKAILEYYDLCPFDL-------NLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRY 253
           + +AI  Y D    ++       +   + P     +F    G+PL+    + +   +   
Sbjct: 257 IVRAIRFYCDEERAEILTRAKSDHTRKKSPKQSSKIFLARTGRPLSSRTVESFFAAISNR 316

Query: 254 LGLPLSTTAHTLRHSFATHLLS---------------NGGD---------LRSIQSILGH 289
            G+ L  T H  RH+FA + L                NG D         LR +Q +LGH
Sbjct: 317 AGIRL--TPHGCRHTFAIYQLDAMIKRMAQNLRELRENGSDAYRQILNDPLRELQKLLGH 374

Query: 290 FRLSTTQIYTN-------VNSKNGGDW 309
             +STT IY +       +  ++ GDW
Sbjct: 375 SHISTTYIYLDFLEDSEALVDESLGDW 401


>gi|255009706|ref|ZP_05281832.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           3_1_12]
          Length = 406

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 22/147 (14%)

Query: 167 GLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD---LCPF 219
           GL  S+   L+P++++ D++  L I+    K +I   +P+LP V  +ILE Y     C  
Sbjct: 257 GLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLP-VAVSILEKYKNVAECTG 315

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGG 278
            L     LP+    R           Y++++    G+  + + HT RHS+AT + L+NG 
Sbjct: 316 KL-----LPVLSNQR--------MNSYLKEIADVCGIHKNLSTHTARHSYATSICLANGV 362

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKN 305
            + ++  +LGH   S T+ Y  V  +N
Sbjct: 363 SMENVAKMLGHADTSITKHYARVLDQN 389


>gi|228918520|ref|ZP_04081963.1| Tyrosine recombinase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228949462|ref|ZP_04111716.1| Tyrosine recombinase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228810185|gb|EEM56552.1| Tyrosine recombinase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228841136|gb|EEM86335.1| Tyrosine recombinase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 358

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 127/304 (41%), Gaps = 42/304 (13%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK---------RRTQKIGD 85
           TL +Y  D R F  +L   +E+ I ++ I+ +S++++     K         +  Q + +
Sbjct: 43  TLLNYVYDFRVFFNWLL--SEQIIELKPIKDISFSDLENLKKKDVENFMRFLKLQQNMQN 100

Query: 86  RSLKRSLSGIKSFLKYL------------------KKRKITTESNILNMRNLKKSNSLPR 127
            S+ R +S +KS  KYL                   K +I  +   LN R  +  + +  
Sbjct: 101 SSVNRKISALKSLFKYLTSLSENDEGECYFYRNVMAKIEIHKDKETLNARAKRMRSKIFH 160

Query: 128 ALNEKQALTLV--DNVLLHTSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIM 182
             ++++ L  V  ++    T H+  +      R+ AIL L  G G+R+SE   L  ++I 
Sbjct: 161 NDDDQEFLNYVKYEHEKSLTKHQLFYFLRDKDRDVAILSLFLGSGIRVSELADLRMEDIN 220

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKP 237
             +  + +  KG+K   V + P     + +Y ++      P     N+ L  ++    +P
Sbjct: 221 LKERLIDVIRKGNKEDSVWITPIALNDLEKYMEIRDNKYAPGKELKNVFLSKYKHT-AQP 279

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+    Q  + +  +  G  +S   H LRH+ A  L     D   +   LGH    T  +
Sbjct: 280 LSVRAIQDIVEKYTKAYGKRMS--PHKLRHTLANKLYMEEKDSLQVMQQLGHTSQDTALL 337

Query: 298 YTNV 301
           YT +
Sbjct: 338 YTQL 341


>gi|134101614|ref|YP_001107275.1| phage integrase family site specific recombinase [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133914237|emb|CAM04350.1| site-specific recombinase, phage integrase family
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 312

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 5/149 (3%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           +L T +   + D R+ AI+ L YG G R++E  +LT  ++     ++  QGKG K R V 
Sbjct: 135 ILDTCNGKTFTDLRDQAIIRLYYGTGARLAEVANLTTDDLDMATDSVVYQGKGGKSRRVR 194

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLS 259
             P   +A+  Y  L     +    +P L+   RG +PL     +  +++  ++ G+   
Sbjct: 195 FGPKTARALSRY--LRARSRHRAADVPSLWLAARGAQPLQANGIKIMLKRRGKHAGVS-G 251

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILG 288
             AH  RH++A      GGD   +  +LG
Sbjct: 252 VHAHRWRHNYAHAWKLAGGDTGDLMLLLG 280


>gi|520404|gb|AAA64588.1| site-specific recombinase [Bacillus thuringiensis serovar
           morrisoni]
          Length = 306

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 129/297 (43%), Gaps = 29/297 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY---TEEKITIQTIRQLSYTEIRAFIS 76
           +++ +L  E  L   TL+ Y  D + F+ +         E      I   + T  R    
Sbjct: 17  DFISSLSQEGDLHTKTLKEYTSDLKDFVFWFENVWGKHAEDTLFHPIEVTARTIARYRGH 76

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            + T+ +   ++ R ++ IK +  + K++ +   +   +++ +    + P+ +++K+   
Sbjct: 77  MQVTRLLKPSTINRRINSIKRYFDWAKQKGLVQTNYSKSIKFVPTEKTSPKRMSDKEEAA 136

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGK 193
           L+  V        K+   R+ A++  +   GLR  E   +  ++++  +    +    GK
Sbjct: 137 LMHAV-------EKYGTLRDRAMIIFMLHTGLRSMEVCDVQIEDVIMRKRGGYVVVRSGK 189

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNP----GVFQRYIR 248
            +K R VPL  + R A+ E+  L         Q  LF   + GK L       + Q+YIR
Sbjct: 190 RNKQREVPLNSTARCALEEHIRLSEIS-----QSYLFPSSKTGKRLQERAIRHILQKYIR 244

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            L +  G     +AH LRH F  ++++    L  +  I+GH  L+TT IY     ++
Sbjct: 245 -LAKLEGF----SAHDLRHRFG-YVMAERTPLHRLAQIMGHDNLNTTMIYVRATQED 295


>gi|315607201|ref|ZP_07882205.1| integrase [Prevotella buccae ATCC 33574]
 gi|315251255|gb|EFU31240.1| integrase [Prevotella buccae ATCC 33574]
          Length = 407

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 21/169 (12%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIR 198
           L+   ++ +  + R + IL L   CGLR  +   LT +NI      L+ +    KG    
Sbjct: 240 LIQCHYDNENPNVRRAFILCLY--CGLRFCDVKDLTYKNIDYTNHLLKFEQNKTKGHSAN 297

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL---G 255
              ++P +   +L      P DL+ +I             N   ++   + ++R++   G
Sbjct: 298 SGVVIP-LNNGLLSLIGEAPDDLDSSI------------FNLPSYESCCKSVKRWVKRAG 344

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +    + H  RHSFA ++L+NG +++++ S+LGH  L  T+ YT    K
Sbjct: 345 INKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|125624094|ref|YP_001032577.1| site-specific tyrosine recombinase XerS [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|229892067|sp|A2RKP9|XERS_LACLM RecName: Full=Tyrosine recombinase xerS
 gi|124492902|emb|CAL97863.1| tyrosine recombinase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070867|gb|ADJ60267.1| site-specific tyrosine recombinase XerS [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 356

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 107/265 (40%), Gaps = 46/265 (17%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-------KKSNSLP-RALNEKQA 134
           +   ++ R+LS + S  KYL +     +      RN+       KKS +L  RA N K  
Sbjct: 101 VSQTTINRTLSALSSLYKYLTEEVENEDGEPYFYRNVMKKVQTKKKSETLASRAENIKGK 160

Query: 135 LTLVDNVLLHTSHETKWIDA-------------------RNSAILYLLYGCGLRISEALS 175
           L L D     T     +ID+                   R+ AI+ L+   G+R+SEA++
Sbjct: 161 LFLGD----ETQGFLDYIDSEYEKTLSNRARSSFFKNKERDLAIIALILASGIRLSEAVN 216

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY-------YDLCPFDLNLNIQLP 228
           +  +++  +   + +  KG K   VP  P  +     Y       Y     D    +   
Sbjct: 217 VDLRDLNLNTMIVEVTRKGGKRDAVPFAPFAKTYFERYLEVRSQRYKTTAKDTAFFV--T 274

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           L+R I  + ++P   ++ + +  +     +  T H LRH+ AT L +       + + LG
Sbjct: 275 LYRDIASR-IDPSSVEKLVAKYSQ--AFKVRVTPHKLRHTLATRLYAQTNSQVLVSNQLG 331

Query: 289 HFRLSTTQIYTNV---NSKNGGDWM 310
           H     T +YT++     KN  D +
Sbjct: 332 HASTQVTDLYTHIINEEQKNALDSL 356


>gi|254884996|ref|ZP_05257706.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254837789|gb|EET18098.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 407

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 16/151 (10%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYY 214
           A ++ LY CGLR  +   LT +N+      L+ +    KG       ++P +   +L   
Sbjct: 255 AFIFCLY-CGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIP-LNDGLLSII 312

Query: 215 DLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
              P D N L   LP +              + +++  +  G+    + H  RHSFA ++
Sbjct: 313 GETPADKNCLIFDLPTYESC----------CKSVKRWVKRAGIDKHISWHCARHSFAVNI 362

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           L+NG +++++ S+LGH  L  T+ YT    K
Sbjct: 363 LNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|254882931|ref|ZP_05255641.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319639734|ref|ZP_07994466.1| integrase [Bacteroides sp. 3_1_40A]
 gi|254835724|gb|EET16033.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317388650|gb|EFV69497.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 200

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 20/148 (13%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYY 214
           A ++ LY CGLR      LT +N+      L+ +    KG       ++P +   +L   
Sbjct: 48  AFIFCLY-CGLRFCNVKDLTFKNVDYANRLLKFEQSKAKGHSASSGVVIP-LNDGLLSII 105

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL---GLPLSTTAHTLRHSFAT 271
              P D N  I             +   ++   + ++R++   G+    + H  RHSFA 
Sbjct: 106 GEVPTDKNCLI------------FDLSTYESCCKSVKRWVKRAGIDKHISWHCARHSFAV 153

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           ++L+NG +++++ S+LGH  L  T+ YT
Sbjct: 154 NILNNGANIKTVASLLGHSGLKHTEKYT 181


>gi|193805068|gb|ACF22181.1| putative resolvase [Escherichia coli]
          Length = 260

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 36/180 (20%)

Query: 153 DARNSAILYLLYGCGLRISEAL-------SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           D R   +L  L+  G RI+EAL       SLTP       +TL+ Q      R    +P+
Sbjct: 57  DLRRKMLLATLWNTGARINEALALTRGDFSLTPPYPFVQLATLK-QRTEKAARTAGRMPA 115

Query: 206 VRKAILEYYDLCPFD----------LNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRY 253
            ++     + L P            +   +++P+ R  +  G+     +++   R +R +
Sbjct: 116 GQQT----HRLVPLSDTWYVSQLQTMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTW 171

Query: 254 LG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +G              +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 172 IGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|196048003|ref|ZP_03115181.1| integrase-recombinase [Bacillus cereus 03BB108]
 gi|196021259|gb|EDX59988.1| integrase-recombinase [Bacillus cereus 03BB108]
          Length = 380

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 98/240 (40%), Gaps = 19/240 (7%)

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--NLKKSNSLPRA 128
           I++    R  Q     +L R L+ I SFL +L K +       ++++   ++  +   R 
Sbjct: 128 IKSVPKGRNNQPYSVSTLARKLATINSFLIHLYKTEYIQSPLHVHLKKATVRVEDRPNRD 187

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQS 186
           L  ++  +L+D       +  K  +     I+  L   GLRI E  +    ++   +++ 
Sbjct: 188 LYFEEVQSLLD-------YFKKQNNLFGYMIILFLVTTGLRIEEIANAKIGDLFKAENKI 240

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN--IQLPLFRGIRGKPLNPGVFQ 244
            L++ GK  K+R V +   + + + EY      D   N     PL      K  NP    
Sbjct: 241 WLKVIGKRGKLREVYISQQLFECLYEYRKRKGLDTQFNRLDTNPLLVSNHSKKFNPNYLS 300

Query: 245 RYIRQLRRYLGLPL------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             I Q+    GLP         T HT RH FA     N  +L  IQ  LGH    TT+IY
Sbjct: 301 NKITQMIFDTGLPFVFEKENPITPHTFRHGFAIIAAENNVELLRIQQTLGHESPMTTKIY 360


>gi|255012270|ref|ZP_05284396.1| putative bacteriophage integrase [Bacteroides sp. 2_1_7]
          Length = 411

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 16/147 (10%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQS----TLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
            ++GC  GL   +   LT ++I+ D+       + + K   +  +PLL  +  AI+E Y 
Sbjct: 253 FIFGCYTGLSFIDIKQLTAEHIVKDREGNFWIRKARQKTKNMCNIPLL-DIPLAIIEKYK 311

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
             P     N+ LP+       P N  +   Y++++    G+    + HT RHS+AT + L
Sbjct: 312 DNPKCQKQNVLLPV-------PCNQKM-NSYLKEISDLCGIHKEISTHTARHSYATSVCL 363

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +NG  + ++  +LGH  ++ T+ Y  V
Sbjct: 364 ANGVSIENVAKMLGHSNINMTKRYARV 390


>gi|167762101|ref|ZP_02434228.1| hypothetical protein BACSTE_00451 [Bacteroides stercoris ATCC
           43183]
 gi|167700060|gb|EDS16639.1| hypothetical protein BACSTE_00451 [Bacteroides stercoris ATCC
           43183]
          Length = 406

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 71/144 (49%), Gaps = 16/144 (11%)

Query: 167 GLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPFDLN 222
           GL  S+   L+P++++ D++  L I+    K +I   +P+LP     + +Y ++      
Sbjct: 257 GLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPMAASILEKYKNVAECTGK 316

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLR 281
           L   LP+    R           Y++++    G+  + + HT RHS+AT + L+NG  + 
Sbjct: 317 L---LPVLCNQR--------MNSYLKEIADVCGIHKNLSTHTARHSYATSICLANGVSME 365

Query: 282 SIQSILGHFRLSTTQIYTNVNSKN 305
           ++  +LGH   S T+ Y  V  +N
Sbjct: 366 NVAKMLGHADTSVTKHYARVLDQN 389


>gi|315181692|gb|ADT88605.1| Hypothetical bacteriophage integrase [Vibrio furnissii NCTC 11218]
          Length = 334

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 20/142 (14%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +  L    G R  EA  L    +   + T  +  K  K R VP+                
Sbjct: 183 VAKLCLATGARWGEAEELKGSTVSHCKVTF-LDTKNGKDRTVPI---------------- 225

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
              +  +Q  +  G  G+       + Y++  +    LP    AH LRH+FA+H + NGG
Sbjct: 226 ---SQELQDEIVTGKSGRLFKDCYAEFYVQLKQCNFDLPKGQAAHVLRHTFASHFMMNGG 282

Query: 279 DLRSIQSILGHFRLSTTQIYTN 300
           ++ ++Q ILGH  +  T  Y +
Sbjct: 283 NILTLQKILGHATIQQTMTYAH 304


>gi|195940121|ref|ZP_03085503.1| resolvase [Escherichia coli O157:H7 str. EC4024]
          Length = 260

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 40/182 (21%)

Query: 153 DARNSAILYLLYGCGLRISEALSLT-------PQNIMDDQSTL------------RIQGK 193
           D R   +L  L+  G RI+EAL+LT       P       +TL            R+   
Sbjct: 57  DLRRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRMPAG 116

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR 251
               R+VPL  S   + L+        +   +++P+ R  +  G+     +++   R +R
Sbjct: 117 QQTHRLVPLSDSWYVSQLQ-------TMVATLKIPMERRNKRTGRTEKARIWEVTDRTVR 169

Query: 252 RYLG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            ++G              +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT
Sbjct: 170 TWIGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYT 229

Query: 300 NV 301
            V
Sbjct: 230 KV 231


>gi|319760125|ref|YP_004124064.1| integrase family protein [Alicycliphilus denitrificans BC]
 gi|317119731|gb|ADV02219.1| integrase family protein [Alicycliphilus denitrificans BC]
          Length = 323

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 4/151 (2%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEY 213
           R+ AI+      GLR  E   L   +I     T+ ++G K  +  I+PL     +A+ +Y
Sbjct: 156 RDYAIVRCALDMGLRAGEIAHLMISDIDWRAGTVMLRGTKSLRQDIMPLPMKTGQALADY 215

Query: 214 YDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                P   N  I +    G R  P+     Q+ I+     +GLP S+ AH LRH+ A  
Sbjct: 216 LQHERPATRNPAIFVRQKEG-RDCPITSMAIQKVIKHACCRVGLPHSS-AHALRHTLACR 273

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           L+ NG  L+ +  +L H  L+TT IY  +++
Sbjct: 274 LVENGSSLKEVADLLRHRSLNTTLIYAKLDT 304


>gi|187776297|ref|ZP_02801730.2| resolvase [Escherichia coli O157:H7 str. EC4196]
 gi|188025300|ref|ZP_02777528.2| resolvase [Escherichia coli O157:H7 str. EC4113]
 gi|187767942|gb|EDU31786.1| resolvase [Escherichia coli O157:H7 str. EC4196]
 gi|188013658|gb|EDU51780.1| resolvase [Escherichia coli O157:H7 str. EC4113]
          Length = 252

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 97/231 (41%), Gaps = 52/231 (22%)

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL------------L 163
           M +  +  SLP A++   AL L    ++H       +    SA+L+             L
Sbjct: 1   MYSAGQPASLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPNLHRKMLLATL 60

Query: 164 YGCGLRISEALSLT-------PQNIMDDQSTL------------RIQGKGDKIRIVPLLP 204
           +  G RI+EAL+LT       P       +TL            R+       R+VPL  
Sbjct: 61  WNTGARINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRMPAGQQTHRLVPLSD 120

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG------- 255
           S   + L+        +   +++P+ R  R  G+     +++   R +R ++G       
Sbjct: 121 SWYVSQLQ-------TMVATLKIPMERRNRRTGRTEKARIWEVTDRTVRTWIGEAVAAAA 173

Query: 256 -----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                  +  T HT RHS+A H+L  G  L+ +QS++GH  +S+ ++YT V
Sbjct: 174 ADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSKEVYTKV 224


>gi|324115878|gb|EGC09806.1| phage integrase [Escherichia coli E1167]
          Length = 220

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 40/182 (21%)

Query: 153 DARNSAILYLLYGCGLRISEALSLT-------PQNIMDDQSTL------------RIQGK 193
           D R   +L  L+  G RI+EAL+LT       P       +TL            R+   
Sbjct: 26  DLRRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRMPAG 85

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR 251
               R+VPL  S   + L+        +   +++P+ R  R  G+     +++   R +R
Sbjct: 86  QQTHRLVPLSDSWYVSQLQ-------TMVATLKIPMERRNRRTGRTEKARIWEVTDRTVR 138

Query: 252 RYLG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            ++G              +  T HT RHS+A H L  G  L+ +QS++GH  +S+T++YT
Sbjct: 139 TWIGEAVAAAAADGVTFSVPVTPHTFRHSYAMHRLYAGIPLKVLQSLMGHKSISSTEVYT 198

Query: 300 NV 301
            V
Sbjct: 199 KV 200


>gi|291543316|emb|CBL16425.1| Site-specific recombinase XerD [Ruminococcus sp. 18P13]
          Length = 310

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 17/179 (9%)

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P+ LN+ +  T+++++ L       W        + L+   G+R SEAL+LTP++     
Sbjct: 115 PKYLNQFELHTMLNHLKLTPQISWDWF-------ILLVAKTGMRFSEALALTPKDFDFPH 167

Query: 186 STLRIQGKGDKIRIVPLLP-----SVRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKP 237
            TL I    D       LP     SVRK  +++  +  F      L    P+F     K 
Sbjct: 168 QTLSINKTWDYKHGTGFLPTKNRSSVRKIQMDWQTVIQFSGLVKGLPEDKPIFVKESQKV 227

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            N  +     R  +   G+P+  + H LRH+ A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 228 YNATINDILERHCKA-AGVPV-ISVHGLRHTHASLLLFAGVSIASVARRLGHASMTTTQ 284


>gi|261881024|ref|ZP_06007451.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270332233|gb|EFA43019.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 407

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 21/169 (12%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIR 198
           L+   ++ +  + R + IL L   CGLR  +   LT +NI      L+ +    KG    
Sbjct: 240 LIQCHYDNENPNVRRAFILCLY--CGLRFCDVKDLTYKNIDYTNRLLKFEQNKTKGHSAN 297

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL---G 255
              ++P +   +L      P DL+ +I             N   ++   + ++R++   G
Sbjct: 298 SGVVIP-LNDGLLSLIGEAPDDLDSSI------------FNLPSYESCCKSVKRWVKRAG 344

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +    + H  RHSFA ++L+NG +++++ S+LGH  L  T+ YT    K
Sbjct: 345 INKHISWHCARHSFAVNILNNGANIKTVSSLLGHSGLKHTEKYTRAVDK 393


>gi|224539317|ref|ZP_03679856.1| hypothetical protein BACCELL_04222 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519064|gb|EEF88169.1| hypothetical protein BACCELL_04222 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 393

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 15/140 (10%)

Query: 166 CGLRISEALSLTPQNI-MDDQSTLR---IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           CGLR S+ ++LT  +I MDD    R   IQ K  +   +PL     K + +  D    D+
Sbjct: 249 CGLRHSDIIALTWGDIEMDDDGNSRLYIIQKKTKEAISLPLSQEAIKQLPKREDAKEDDI 308

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
                  +F+ +        +  ++  Q     G+    T HT RH+ AT LL+ G DL 
Sbjct: 309 -------IFKKLITLGRTNEILPKWAEQA----GIKKHITFHTARHTHATMLLTLGVDLY 357

Query: 282 SIQSILGHFRLSTTQIYTNV 301
           ++  +LGH  + TTQIY  +
Sbjct: 358 TVSKLLGHTNIQTTQIYAKL 377


>gi|186474496|ref|YP_001863467.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198455|gb|ACC76417.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 335

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 134/316 (42%), Gaps = 34/316 (10%)

Query: 5   NLPEIVS-FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N+P+  + F +L + Q ++  L  +R +S  T+ SY  DT + L    F+  E+   +  
Sbjct: 2   NIPDPAARFSVLLQ-QFFMDYLIGQRNVSPRTVASYR-DTFRLL----FHFAEQHVGRPP 55

Query: 64  RQLSYTEIRA-----FISKRRTQKIGD-RSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
            +L  T+  A     F++     +    RS    L+ ++SF  Y        E + L + 
Sbjct: 56  HKLRLTDFNAGLILDFLNHLEVGRHNTIRSRNARLAAVRSFAHY----AALQEPSALPV- 110

Query: 118 NLKKSNSLPRALNEKQALTLVD----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
            L+   ++P    ++  +  +       +L   +   W   R+ A+L  LY  G R+SE 
Sbjct: 111 -LQGVLAIPMKRFDRPMVGFLSREEMQCILAAPNADTWCGKRDQAMLATLYNTGARVSEL 169

Query: 174 LSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
            S+  +++ +   S + + GKG K R +PL     K +  +       +N + Q  LF  
Sbjct: 170 TSMRVKDVTLGRGSCVLLHGKGRKERTLPLWNDTAKLLRRWLR----QINPDPQQWLFPN 225

Query: 233 IRGKPLN-PGVFQRY-IRQLRRYLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSI 286
             G  +   GV  R  +       G P       + H +RH+ A H+L  G DL  I   
Sbjct: 226 RSGGQMTRAGVTDRLKLAAATASEGYPPLKARHVSPHVVRHATAMHMLQGGVDLSLIALW 285

Query: 287 LGHFRLSTTQIYTNVN 302
           LGH   +TT +Y   +
Sbjct: 286 LGHESPATTHMYIEAD 301


>gi|315615273|gb|EFU95909.1| integrase [Escherichia coli 3431]
          Length = 343

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 21/144 (14%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I  +    G R SEA +L    +   + T   + KG K R VP+                
Sbjct: 199 IAKICLATGARWSEAENLQGHQLSKYRITY-TKTKGKKNRTVPI---------------- 241

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
              +L  +LP  RG    P     F+R ++  R  + LP     H LRH+FA+H + NGG
Sbjct: 242 -SQDLYNELPKNRGRLFTPCRK-AFERAVK--RAGIELPEGQCTHVLRHTFASHFMMNGG 297

Query: 279 DLRSIQSILGHFRLSTTQIYTNVN 302
           ++  ++ ILGH  +  T IY + +
Sbjct: 298 NILVLRDILGHADIKMTMIYAHFS 321


>gi|295697303|ref|YP_003590541.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295412905|gb|ADG07397.1| integrase family protein [Bacillus tusciae DSM 2912]
          Length = 326

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 75/157 (47%), Gaps = 16/157 (10%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           LLY  GLRI EAL+L   ++     TL I+  K DK R +P+ P++ + +  Y  +    
Sbjct: 148 LLYSSGLRIGEALALRGGDVNLQTGTLHIRVAKLDKERRIPVHPALVQRMERYVKV--LG 205

Query: 221 LNLNIQLPLFRGIRGKPLNPG----VFQRYIRQLR-RYLGLPLSTTAHTLRHSFATHLLS 275
           +   ++ PLF G  G+          F+R++ +    + G       H LRH+FA H L 
Sbjct: 206 ITPTLEAPLFPGPSGQSYCESTIYDAFRRFLWEANISHGGRGRGPRLHDLRHTFAVHCLR 265

Query: 276 ----NGGDLRS----IQSILGHFRLSTTQIYTNVNSK 304
                G DL      + + +GH  L +TQ+Y  + ++
Sbjct: 266 KWVLEGVDLTVALPYLSAYMGHTSLKSTQMYLRLTAE 302


>gi|325299560|ref|YP_004259477.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324319113|gb|ADY37004.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 407

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 16/151 (10%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYY 214
           A ++ LY CGLR  +   LT +N+      L+ +    KG       ++P +   +L   
Sbjct: 255 AFIFCLY-CGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIP-LNDGLLSII 312

Query: 215 DLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
              P D N L   LP +              + +++  +  G+    + H  RHSFA ++
Sbjct: 313 GEAPADKNCLIFDLPSYESC----------CKSVKRWVKRAGIDKHISWHCARHSFAVNI 362

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           L+NG +++++ S+LGH  L  T+ YT    K
Sbjct: 363 LNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|225377376|ref|ZP_03754597.1| hypothetical protein ROSEINA2194_03024 [Roseburia inulinivorans DSM
           16841]
 gi|225210777|gb|EEG93131.1| hypothetical protein ROSEINA2194_03024 [Roseburia inulinivorans DSM
           16841]
          Length = 329

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 16/161 (9%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           +LYGCG RISE L+LT  ++  ++  + I   K    R+VP+  ++      Y +    D
Sbjct: 148 MLYGCGFRISELLNLTVGDVDIERGIIHIHDSKNGNERLVPMAATLAARCRTYTESVHND 207

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR-----RYLGLPLSTTAHTLRHSFATHLLS 275
              +   P F    G        +R+ R+        YLG  L    H LRH+F  H L+
Sbjct: 208 HEED--FPFFFKKDGTGYCVSNIERHFREQLWLAGIPYLGKELGPRVHDLRHTFICHRLN 265

Query: 276 ----NGGDLRSIQSIL----GHFRLSTTQIYTNVNSKNGGD 308
                G DL ++  IL    GH  +++TQ Y  + ++   D
Sbjct: 266 QWAKEGVDLTAMLPILSKYVGHTGIASTQYYLKLTAEAFPD 306


>gi|212702804|ref|ZP_03310932.1| hypothetical protein DESPIG_00836 [Desulfovibrio piger ATCC 29098]
 gi|212673666|gb|EEB34149.1| hypothetical protein DESPIG_00836 [Desulfovibrio piger ATCC 29098]
          Length = 447

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 18/150 (12%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LN 224
           GLR  E ++L  ++   D  T+R+  G  D +R           IL    L P  LN L 
Sbjct: 274 GLRAGELVNLRCESCDADSGTIRVLVGAKDSLRSTK---GGETRILRAGRLYPESLNMLR 330

Query: 225 IQLP------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-------HTLRHSFAT 271
            +L       LF G  G+  +     R +R++   LG     T        HTLRH+FAT
Sbjct: 331 ERLGRLKTGFLFPGPDGRERDANGLNRAMRRIMDKLGFNDGVTDPRNRVVWHTLRHTFAT 390

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            +L  G D+ ++++++GH  ++TT+IY ++
Sbjct: 391 RMLEAGLDIYALKTLMGHASVTTTEIYLHI 420


>gi|270297099|ref|ZP_06203298.1| phage integrase [Bacteroides sp. D20]
 gi|270273086|gb|EFA18949.1| phage integrase [Bacteroides sp. D20]
          Length = 368

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 105/255 (41%), Gaps = 37/255 (14%)

Query: 52  FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111
           +YT  K   +   +++    R FI     +K+   +++  ++ I+ F K+LKK       
Sbjct: 125 YYTSMKKYFEYANEVNMDNCRRFIKSLEEEKLSPATIRLRITAIEKFSKWLKKPIELKRP 184

Query: 112 NI---LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY----LLY 164
            I   L++ N+   +   R L                    +++ A+N+   Y    +L 
Sbjct: 185 KIKRKLDVNNVPTEDEYNRLL--------------------EYLKAKNNKDYYFFIKVLG 224

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
             G R+SE    T ++I+  + TL+  GKG+K R       +++    Y          +
Sbjct: 225 TTGARLSEFQQFTWEDIISGEVTLK--GKGNKYRRFFFQKQLQQEAKAY-------AKEH 275

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSI 283
            +  LF   +  P     F ++++   ++ G+      AH  RH FA   L    D+  +
Sbjct: 276 GKTGLFAVGKFGPFTQRGFSQHLKAWGKHCGIDSRKMHAHAFRHFFAKMFLKKNKDVIQL 335

Query: 284 QSILGHFRLSTTQIY 298
             +LGH  + TT+IY
Sbjct: 336 ADLLGHGSVDTTRIY 350


>gi|2392139|pdb|1AIH|A Chain A, Catalytic Domain Of Bacteriophage Hp1 Integrase
 gi|2392140|pdb|1AIH|B Chain B, Catalytic Domain Of Bacteriophage Hp1 Integrase
 gi|2392141|pdb|1AIH|C Chain C, Catalytic Domain Of Bacteriophage Hp1 Integrase
 gi|2392142|pdb|1AIH|D Chain D, Catalytic Domain Of Bacteriophage Hp1 Integrase
          Length = 170

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 60/142 (42%), Gaps = 21/142 (14%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I+ +    G R SEA +LT   +M  + T     K  K R VP+         E +D+ P
Sbjct: 30  IVRICLATGARWSEAETLTQSQVMPYKITF-TNTKSKKNRTVPISD-------ELFDMLP 81

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
                          RG+  N          LR  + LP     H LRH+FA+H + NGG
Sbjct: 82  -------------KKRGRLFNDAYESFENAVLRAEIELPKGQLTHVLRHTFASHFMMNGG 128

Query: 279 DLRSIQSILGHFRLSTTQIYTN 300
           ++  ++ ILGH  +  T  Y +
Sbjct: 129 NILVLKEILGHSTIEMTMRYAH 150


>gi|67924958|ref|ZP_00518346.1| Phage integrase [Crocosphaera watsonii WH 8501]
 gi|67853195|gb|EAM48566.1| Phage integrase [Crocosphaera watsonii WH 8501]
          Length = 316

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 71/154 (46%), Gaps = 19/154 (12%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213
           R+ A+L +L G GLR +E ++L+  +   D   L+I QGKGDK R V L  S  + +  +
Sbjct: 153 RDLALLAILRGAGLRRAELVALSVNDFTPDGGILQIRQGKGDKERTVYLPLSAVEIVNRW 212

Query: 214 YD---------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            D         LCP      I    FR +     +  V++  I   R       S + H 
Sbjct: 213 LDLRSRTRGALLCPIRKGGAI---CFRHLH----SDAVYK--ILAKRAGEAAIESFSPHD 263

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            R +F + LLSNG DL ++Q + GH     T  Y
Sbjct: 264 FRRTFCSDLLSNGVDLVTVQKLAGHSSPDVTAKY 297


>gi|237708556|ref|ZP_04539037.1| transposase [Bacteroides sp. 9_1_42FAA]
 gi|229457485|gb|EEO63206.1| transposase [Bacteroides sp. 9_1_42FAA]
          Length = 320

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 13/145 (8%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKG-DKIRIVPLLP--SVRKAILEYYDL 216
            ++ C  GL  S+   L  ++I++D + +R   KG  K +I+  +P   +   ILE Y  
Sbjct: 164 FVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQKTKIMCNIPLIEIPLKILEKYST 223

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
             +     +  P+   +  + +N      Y+++L    G+  + T H  RH+FAT  L+N
Sbjct: 224 NEYCKKHGVLFPV---LCNQKMNA-----YLKELADICGIKKTLTTHVGRHTFATFALAN 275

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNV 301
           G  + S+  +LGH  +  T+ Y  V
Sbjct: 276 GVSIESVAKMLGHTNVQMTRHYARV 300


>gi|266619589|ref|ZP_06112524.1| integrase/recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
 gi|288868877|gb|EFD01176.1| integrase/recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
          Length = 279

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 11/165 (6%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           L+  + E K  D R S ++  L   G+R+SE   +T + +     ++ I GKG K R V 
Sbjct: 113 LVRAAREKK--DERLSLLIQTLCSTGIRVSEHRCITVEALRS--GSICIDGKG-KERAV- 166

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLST 260
            LP   +  L+YY  C  +  +    P+F    GKPLN       ++ L +  G+ P   
Sbjct: 167 FLPKKLQKQLKYY--CK-EKKITTG-PVFITKSGKPLNRCNIWAEMKALCKNAGIEPQKV 222

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             H LRH FA        D+  +  ILGH  + TT+IYT+   + 
Sbjct: 223 FPHNLRHLFALTYYRLEKDIVRLADILGHANIETTRIYTSTTEEE 267


>gi|167463333|ref|ZP_02328422.1| tyrosine recombinase xerC [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322384830|ref|ZP_08058491.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321150299|gb|EFX43801.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 317

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 122/273 (44%), Gaps = 25/273 (9%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T ++YE   +QF  F+++   +++T + +     + I+   +K + + +   S+   ++ 
Sbjct: 37  TRRNYERALQQFREFISYKPFQQVTWKEVEAYKLSLIQGRFAKSK-KPLAPASVAAFITP 95

Query: 95  IKSFLKYLKKRKITTESNI-LNMRNLKKSNSLP--RALNEKQALTLVD-NVLLHTSHETK 150
           ++SF K+       +ESNI +   N   S  +P  +  ++K  LT  +   LL    +  
Sbjct: 96  LRSFYKW------GSESNIGIFKHNPTVSVRMPPIQVNSKKHFLTKYEVGKLLQCLKQQ- 148

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-----QGKGDKIRIVPLLPS 205
               RN  I   L   GLR+SE +S+   +   D     +     + KG K R + +  +
Sbjct: 149 --SLRNYLIGLSLVLLGLRVSELVSMKWGDFHPDPLETSVWLTIPKAKGGKSRDIKIPKA 206

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           + K   E+ +      N +  L LF      P++    +R I+      G+    T H L
Sbjct: 207 LWKLYTEHAETLSESANPHANLQLF------PISVRQIERIIKSAGIQSGIVKKLTPHWL 260

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           RH+ AT  L  G  L+ +Q  LGH  ++TTQ Y
Sbjct: 261 RHTNATLALLQGASLQQVQETLGHSHINTTQRY 293


>gi|300825416|ref|ZP_07105489.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
 gi|300522125|gb|EFK43194.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
          Length = 260

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 36/180 (20%)

Query: 153 DARNSAILYLLYGCGLRISEAL-------SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           D R   +L  L+  G RI+EAL       SLTP       +TL+ Q      R    +P+
Sbjct: 57  DLRRKMLLATLWNTGARINEALALTRGDFSLTPPYPFVQLATLK-QRTEKAARTAGRMPA 115

Query: 206 VRKAILEYYDLCPFD----------LNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRY 253
            ++     + L P            +   +++P+ R  +  G+     +++   R +R +
Sbjct: 116 GQQT----HRLVPLSDTWYLSQLQTMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTW 171

Query: 254 LG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +G              +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 172 IGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|312111596|ref|YP_003989912.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|312112616|ref|YP_003990932.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|311216697|gb|ADP75301.1| integrase family protein [Geobacillus sp. Y4.1MC1]
 gi|311217717|gb|ADP76321.1| integrase family protein [Geobacillus sp. Y4.1MC1]
          Length = 379

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 105/230 (45%), Gaps = 35/230 (15%)

Query: 85  DRSLKRSLSG----IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           D+ LK+  +G     K FL ++ K K  +  +IL ++  +K     + L +++   L++ 
Sbjct: 131 DKLLKQVFTGGRTRYKDFLYHVNKNK-PSNRHILKVKEPRKK---LKVLTKEEVQQLIEA 186

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQ-------G 192
                       + R+  ++ LL+  GLRI EALSL  ++ I D ++  RI+        
Sbjct: 187 T----------TNIRDRLLIQLLFETGLRIGEALSLFIEDFIFDHKNGHRIRLVNRGELE 236

Query: 193 KGDKIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIR-GKPLNPGVFQR 245
            G K++       V +A++   D      +   DL+ N      RG   G+P+     + 
Sbjct: 237 NGAKLKTGEREIYVSQALMNLLDDYLYEVVDELDLDTNFVFVKLRGKNIGQPMTYSDVEA 296

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             ++LR+  G+ +    H LRH+ AT       D++ +Q  LGH ++ TT
Sbjct: 297 LFKRLRKKTGIHVH--PHLLRHTHATMYYQQTKDIKQVQERLGHSQIQTT 344


>gi|307566131|ref|ZP_07628589.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345319|gb|EFN90698.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 407

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 17/167 (10%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIR 198
           L+   ++ +  + R + IL L   CGLR  +   LT +NI      L+ +    KG    
Sbjct: 240 LIQCHYDNENPNVRRAFILCLY--CGLRFCDVKDLTYKNIDYTNRLLKFEQNKTKGHSAH 297

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
              ++P +   +L      P DL+ +I  LP +              + +++  +  G+ 
Sbjct: 298 SGVVIP-LNDGLLSLIGDAPEDLDSSIFNLPSYESC----------SKSVKRWVKRAGIN 346

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              + H  RHSFA ++L+NG +++++ S+LGH  L  T+ YT    K
Sbjct: 347 KHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|269120003|ref|YP_003308180.1| integrase family protein [Sebaldella termitidis ATCC 33386]
 gi|268613881|gb|ACZ08249.1| integrase family protein [Sebaldella termitidis ATCC 33386]
          Length = 344

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 33/187 (17%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARN----SAILYLLYGCGLRISEALSLTPQNIM 182
           + L EK   T  +  LL       W + +N      IL ++Y  G+RI E LSL  Q++ 
Sbjct: 164 KVLKEKSVFTDAEIDLL-------WDNLQNFKYADTILIMIY-TGMRIGELLSLMKQDVD 215

Query: 183 DDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
             + T+ ++       + R++P+ P +++ I   Y+    D            +     N
Sbjct: 216 LIEQTITVKESKTAAGRNRVIPIHPRIKELIHIRYEHSNID-----------NLIASATN 264

Query: 240 PGVFQRYIRQLRRYLG-----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
               + Y+  LR +       L ++ T H  RH+FAT L   GG+  +I+ ++GH   + 
Sbjct: 265 KTSLE-YVNYLRHFFAPVMKSLKMNHTPHDCRHTFATRLNDAGGNATAIKKMIGHESFTL 323

Query: 295 TQ-IYTN 300
           T+ +YT+
Sbjct: 324 TEKVYTH 330


>gi|255505350|ref|ZP_05345621.3| putative phage integrase/recombinase [Bryantella formatexigens DSM
           14469]
 gi|255268514|gb|EET61719.1| putative phage integrase/recombinase [Bryantella formatexigens DSM
           14469]
          Length = 306

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 9/153 (5%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           + R S I+  +   G+R+SE   +T + +   ++T+ ++GK    R+V LLP+    IL 
Sbjct: 149 NVRLSLIMQTICSTGIRVSELEFITVEALRSRRATVSLKGK---TRVV-LLPAELCRILR 204

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFAT 271
            Y     + N++ +  +F    GKPL+       ++ L    G+ P     H LRH FA 
Sbjct: 205 KY---VKEHNIS-EGCIFVSRSGKPLDRSNIFHDMKALCETAGVNPEKVFPHNLRHLFAI 260

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
                  D+  +  ILGH  + TT+IYT VN +
Sbjct: 261 TYYDVEKDISHLADILGHASIDTTRIYTMVNGE 293


>gi|124028392|ref|YP_001013712.1| integrase [Hyperthermus butylicus DSM 5456]
 gi|123979086|gb|ABM81367.1| possible integrase [Hyperthermus butylicus DSM 5456]
          Length = 406

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 11/149 (7%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLC 217
           I+ LL+  GLR  EA+ L   +I   +  +R++G K  + RIV   P    A+  +  L 
Sbjct: 152 IVALLFETGLRAQEAVELRLGDIDFQRREIRVRGAKYGEERIVLYGPLTEYAMQIWLQLH 211

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSN 276
           P D+  + +L    GI       G+++R ++ L +  GL P     H LRH+FAT  L  
Sbjct: 212 P-DMKPDDKL---LGISYS----GLYKR-LKTLAKRAGLDPRKVRPHVLRHTFATEALRR 262

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           G  L ++Q +LGH  +  TQ+Y ++ +++
Sbjct: 263 GLPLPAVQRLLGHKDIKVTQVYLHLVNED 291


>gi|134045285|ref|YP_001096771.1| tyrosine recombinase XerC subunit [Methanococcus maripaludis C5]
 gi|132662910|gb|ABO34556.1| tyrosine recombinase XerC subunit [Methanococcus maripaludis C5]
          Length = 291

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 84/190 (44%), Gaps = 16/190 (8%)

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           L+KS      L ++Q   L+ NV           +      L      G+R SE  +L  
Sbjct: 105 LRKSKKEREYLTKEQTNYLLSNVF----------EYEYRLFLMFFLHTGVRNSEFRNLKI 154

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
            ++  D+ T+RI GKG K R V  + +   + L+ + L   D         F    G P+
Sbjct: 155 HDVDMDERTIRILGKGRKERYV-FIDNELYSYLKIW-LIQRDSKFPKSDHFFVNRLGNPI 212

Query: 239 ---NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
              +   F  Y+ ++ +   +    T H LRH+FAT  +  G DL+++  ILGH  + TT
Sbjct: 213 RLTHLVSFTDYLNEVSKN-KIGFRITPHILRHTFATRCIDMGMDLKTLSLILGHEDIKTT 271

Query: 296 QIYTNVNSKN 305
            IY + N ++
Sbjct: 272 SIYLHKNKES 281


>gi|46200178|ref|YP_005845.1| DNA integration/recombination/invertion protein [Thermus
           thermophilus HB27]
 gi|46197806|gb|AAS82218.1| DNA integration/recombination/invertion protein [Thermus
           thermophilus HB27]
          Length = 392

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 59/280 (21%), Positives = 118/280 (42%), Gaps = 35/280 (12%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKK 121
           ++++    +RA + +        R++ R L  +K+  +   + ++   +    +R  L K
Sbjct: 121 LQEVKPVHVRAAVDRVAEAGYAPRTVNRVLMRLKALFREALRLELVARNPAEAVRLRLPK 180

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
                RAL  ++   L++      S +        + +L L+   GLR  EAL+L  ++I
Sbjct: 181 GEKTARALEPQEVARLLEAAEASRSKDM-------ALLLRLMLETGLRRGEALALQWRDI 233

Query: 182 MDDQSTLRI-----QGKGDKIRIVPLLPSVRKAILEYYD---------------LCPFDL 221
             +   L +     + +G      P  P+ ++ +                    L P ++
Sbjct: 234 DLEAGELTVWRSWTKARGKGAFSEPKTPTAKRKVPLPRGLLLRLKARREELLERLTPEEV 293

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
           +    L L  G+  KP++P  F  Y+R+L    GL      H LRH++AT  LS G  L 
Sbjct: 294 D---GLFLVGGV--KPVDPDAFNHYLRRLAERAGLG-RVRVHDLRHTWATLALSRGVPLE 347

Query: 282 SIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPS 320
            +   LGH   + T  +Y ++  +    W++++ +  +P+
Sbjct: 348 VVSERLGHASPTITLNVYRHLLEEERRGWVLDLEELLYPA 387


>gi|330907861|gb|EGH36384.1| resolvase [Escherichia coli AA86]
          Length = 259

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 36/180 (20%)

Query: 153 DARNSAILYLLYGCGLRISEAL-------SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           D R   +L  L+  G RI+EAL       SLTP       +TL+ Q      R    +P+
Sbjct: 57  DLRRKMLLATLWNTGARINEALALTRGDFSLTPPYPFVQLATLK-QRTEKAARTAGRMPA 115

Query: 206 VRKAILEYYDLCPFD----------LNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRY 253
            ++     + L P            +   +++P+ R  +  G+     +++   R +R +
Sbjct: 116 GQQT----HRLVPLSDTWYVSQLQTMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTW 171

Query: 254 LG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +G              +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 172 IGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|329963222|ref|ZP_08300959.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328528918|gb|EGF55858.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 308

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 81/189 (42%), Gaps = 34/189 (17%)

Query: 142 LLHTSHETKWIDA-------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           +L  +H  K +D        RN  I Y+    GLRI E  +L   +I  D  T+ +Q   
Sbjct: 109 VLTVAHHKKILDYIRQNFTFRNLGI-YISLSTGLRIGEVCALRWSDIDVDSGTISVQRTI 167

Query: 195 DKIRIVPL----------LPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIRGK------- 236
           ++I I+             P  + +  E     P    L  +  PL + +          
Sbjct: 168 ERIYIIEGEMKHTELVINTPKTKNSCRE----IPMSKELLALVKPLKKVVNADYYILTNE 223

Query: 237 --PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
             P  P  ++ Y ++L  +LG+P     H LRHSFAT  + +  D +++  +LGH  +ST
Sbjct: 224 PLPTEPRTYRNYYKRLMEHLGIP-KLKFHGLRHSFATRCIESNCDYKTVSVLLGHSNIST 282

Query: 295 T-QIYTNVN 302
           T  +Y + N
Sbjct: 283 TLNLYVHPN 291


>gi|323963898|gb|EGB59392.1| phage integrase [Escherichia coli M863]
          Length = 337

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 65/144 (45%), Gaps = 21/144 (14%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I  +    G R SEA +L    I   + T   + KG K R VP+   +       YD  P
Sbjct: 199 IAKICLATGARWSEAENLQGHQISKYRITY-TKTKGKKNRTVPISQDL-------YDELP 250

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
            +     +  LF   R        F+R ++  R  + LP     H LRH+FA+H + NGG
Sbjct: 251 KN-----RRKLFTPCRK------AFERAVK--RAGIDLPEGQCTHVLRHTFASHFMMNGG 297

Query: 279 DLRSIQSILGHFRLSTTQIYTNVN 302
           ++  ++ ILGH  +  T IY + +
Sbjct: 298 NILVLRDILGHADIKMTMIYAHFS 321


>gi|295692919|ref|YP_003601529.1| integrase/recombinase [Lactobacillus crispatus ST1]
 gi|295031025|emb|CBL50504.1| Integrase/recombinase [Lactobacillus crispatus ST1]
          Length = 203

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 88/203 (43%), Gaps = 14/203 (6%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E   +L  L+ ER  S  T+ +Y+ D  +   F      E        ++   +I+ ++ 
Sbjct: 7   ELDQFLSYLQNERHYSAKTVLAYQTDLHEAERFW----HENGGFPGWTKVRERDIQVYLQ 62

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               +K+   S  R +S + SF ++L +RK+        +   +    LP+   + +   
Sbjct: 63  HLAERKLARSSQLRKMSSLHSFYRFLTRRKLVAIDPTQGITLRRGEKKLPQFFYQPELKQ 122

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           + D++        K +  RN A+  L Y  G+R+SE  +LT   +  D  T+ + GKG+K
Sbjct: 123 VFDSL-----KGNKPLTMRNLAMFELFYATGMRVSEVSNLTLNQLDLDLQTILVHGKGNK 177

Query: 197 IRIVPLLPSVRKAILEYYDLCPF 219
            R V      +K    Y+D C F
Sbjct: 178 DRYVAFDDKTKK----YFD-CLF 195


>gi|325680339|ref|ZP_08159898.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324107968|gb|EGC02225.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 327

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 92/213 (43%), Gaps = 18/213 (8%)

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + SF  +L++     +S +  +  +K ++++     ++    + D+            D 
Sbjct: 121 LSSFFSWLEEENYIMKSPVRRIHKIKTASTIKDTYTDEALEQMRDDC----------TDL 170

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A++ +L   G+R+ E + L   +I  ++    + GKG+K RIV      +  + +Y 
Sbjct: 171 RDLALIDMLASTGMRVGELVLLNRSDIDFEERECVVLGKGNKERIVYFDARTKLHLKQYL 230

Query: 215 DLCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           D    D        LF  ++   K L  G  +  IR++ + L +      H  R + AT 
Sbjct: 231 DSRTDD-----NEALFVSLKAPHKRLKIGGVEVRIRKIGKRLNIQ-KAHPHKFRRTLATM 284

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +  G  +  +Q +LGH R+ TT  Y  V   N
Sbjct: 285 AIDKGMPIEQLQQLLGHRRIDTTLQYAMVKQSN 317


>gi|238064005|ref|ZP_04608714.1| phage integrase family site-specific recombinase [Micromonospora
           sp. ATCC 39149]
 gi|237885816|gb|EEP74644.1| phage integrase family site-specific recombinase [Micromonospora
           sp. ATCC 39149]
          Length = 306

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 96/223 (43%), Gaps = 14/223 (6%)

Query: 72  RAFISKRRTQKIGDRSLKRSLS---GIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPR 127
           RA +   +   I  RS   +L+   G++ F K+L    +    S +  +R  K    L  
Sbjct: 73  RAHVEAFQAWMIDTRSASTALNKHKGLQQFFKWLLVDEQAIDRSPMERVRQPKTLRKLIP 132

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            + ++    L+D           + + R+ A++ L    G R+SE  +L   ++  +  +
Sbjct: 133 VMRDEDTGKLLD-----ACRGKGFANMRDEALIRLYCNTGARLSEVGNLLVADVDLNTES 187

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIR-GKPLNPGVFQR 245
           +   GKG K R V   P   +A+  Y  L   D +    LP L+   R G PL P   + 
Sbjct: 188 VHFHGKGAKDRRVRFGPKTARALSRY--LRARDKHKGAALPQLWLAERGGAPLTPNGIKI 245

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
            +++L +  G+P    AH  RH+FA      GGD   +  +LG
Sbjct: 246 LLKRLGKAAGVP-DVHAHRWRHNFAHEWKRAGGDTGDLMLLLG 287


>gi|300714681|ref|YP_003739484.1| Site-specific recombinase, phage integrase family [Erwinia
           billingiae Eb661]
 gi|299060517|emb|CAX57624.1| Site-specific recombinase, phage integrase family [Erwinia
           billingiae Eb661]
          Length = 335

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 2/69 (2%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYL-GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           I GK  N   ++ + +QLR  +  LP     H LRH+FA+H + NGG++ +++ ILGH +
Sbjct: 239 ISGKLFNVD-YENFRQQLREVIPDLPRGQATHVLRHTFASHFMMNGGNIITLRDILGHSK 297

Query: 292 LSTTQIYTN 300
           +  T IY +
Sbjct: 298 IEQTMIYAH 306


>gi|229113593|ref|ZP_04243041.1| Integrase-recombinase [Bacillus cereus Rock1-15]
 gi|228669892|gb|EEL25287.1| Integrase-recombinase [Bacillus cereus Rock1-15]
          Length = 390

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 65/153 (42%), Gaps = 10/153 (6%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           N  +L  L   G RI E      +++  D +  L++ GKG K+R + +   + + I E  
Sbjct: 218 NYTLLLALASTGARIQELCRTRVKDLYYDGKYWLKVIGKGGKVRELFISEHLYQCICEVR 277

Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266
               F   L+     PLF   RG   NP      +  + +   L          TAHT R
Sbjct: 278 RKRGFQTILDQGDGDPLFVNQRGNFYNPKTLSNQVTDMIKKTNLEFLQYRENPVTAHTFR 337

Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
           H+FA   +  G  DL  +   LGH  + TT+IY
Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370


>gi|126661412|ref|ZP_01732472.1| integrase-recombinase protein [Cyanothece sp. CCY0110]
 gi|126617296|gb|EAZ88105.1| integrase-recombinase protein [Cyanothece sp. CCY0110]
          Length = 317

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 129/295 (43%), Gaps = 33/295 (11%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE----IRAFISKRRT 80
           L +E   S +T + YE D R F   ++    ++  +    ++S ++    + A+ +  + 
Sbjct: 20  LWLEDKSSAMTRREYEKDLRYFFKVMSGKEVDEELVSAFLKVSQSQANAALMAYKATLKR 79

Query: 81  QKIGDRSLKRSLSGIKSFL---------KYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           +++   ++ R +S +KSF+         +Y  K  +++E     ++  + ++ +P A   
Sbjct: 80  RELAPTTINRKISAVKSFVSTANRLGLCQYSLKDAVSSE----KLKPYRDTSGIPLA-EF 134

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           K+ L L D   L           R+ A+L L +   LR +E   L   + +  +  L ++
Sbjct: 135 KKVLALCDLTTLKGK--------RDRALLMLFWSNALRRNEVSLLDIGDFVPSRRILWVR 186

Query: 192 GKG-DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI----RGKPLNPGVFQRY 246
           GKG  +   V L P   KAI ++         +    PLF  +    RG  L+     + 
Sbjct: 187 GKGRSEKESVDLSPKTIKAICDWL-ADRGSAGIKSSSPLFISLDSRSRGSRLSGDGLYKI 245

Query: 247 IRQLRRYLGLPLSTTAHTLRHS-FATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           IR   +  G+    + H +RHS   T L  + GD+R +Q +  H  L+T  IY +
Sbjct: 246 IRCYCKDAGIDKLMSPHRIRHSSITTALDKSDGDVRKVQKLSRHKNLNTLMIYDD 300


>gi|313147493|ref|ZP_07809686.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313136260|gb|EFR53620.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 345

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 22/147 (14%)

Query: 167 GLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD---LCPF 219
           GL  S+   L+P++++ D++  L I+    K +I   +P+LP V  +ILE Y     C  
Sbjct: 196 GLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLP-VAVSILEKYKNVAECTG 254

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGG 278
            L     LP+    R           Y++++    G+  + + HT RHS+AT + L+NG 
Sbjct: 255 KL-----LPVLSNQR--------MNSYLKEIADVCGIHKNLSTHTARHSYATSICLANGV 301

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKN 305
            + ++  +LGH   S T+ Y  V  +N
Sbjct: 302 SMENVAKMLGHADTSITKHYARVLDQN 328


>gi|291515341|emb|CBK64551.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 374

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 91/218 (41%), Gaps = 16/218 (7%)

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--PRALNEKQALTLVDNVLLHTSH 147
           R+L  +  F + +K + +  E N      + + N+    RAL++   + +VD      S 
Sbjct: 157 RTLRAV--FNRAIKLKAVAREKNPFTDYKISRFNTRTPKRALSKTDVMKIVD---ADCSA 211

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
           E+       S   +     G+   +  +LT  NI+D + +   Q     I  VPL     
Sbjct: 212 ESDSCRLAQSVFTFSYLCGGISFVDVANLTSDNIVDGRLSYNHQKTHGAIH-VPLSERAM 270

Query: 208 KAILEYYDLC-------PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           + +  Y + C       P   +    +P+ +  R   +   V    +RQL R L +    
Sbjct: 271 RIVNRYAEACEQSGYLFPILDSRRHTMPMQKRNRVHKVCHQV-NTELRQLARRLNISGEV 329

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           T +  RHSFAT L  +G ++  I   LGH  L TTQIY
Sbjct: 330 TTYCARHSFATVLKKSGVNIGIISEALGHHSLKTTQIY 367


>gi|229073648|ref|ZP_04206763.1| Tyrosine recombinase [Bacillus cereus F65185]
 gi|228709503|gb|EEL61562.1| Tyrosine recombinase [Bacillus cereus F65185]
          Length = 358

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 126/304 (41%), Gaps = 42/304 (13%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK---------RRTQKIGD 85
           TL +Y  D R F  +L   +E+ I ++ I+ +S+ ++     K         +  Q + +
Sbjct: 43  TLLNYVYDFRVFFNWLL--SEQVIELKPIKDISFADLENLKKKDVENFMRFLKLQQNMQN 100

Query: 86  RSLKRSLSGIKSFLKYL------------------KKRKITTESNILNMRNLKKSNSLPR 127
            S+ R +S +KS  KYL                   K +I  +   LN R  +  + +  
Sbjct: 101 SSVNRKISALKSLFKYLTSLSENEDGECYFYRNVMAKIEIHKDKETLNARAKRMRSKIFH 160

Query: 128 ALNEKQALTLV--DNVLLHTSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIM 182
             ++++ L  V  ++    T H+  +      R+ AIL L  G G+R+SE   L  ++I 
Sbjct: 161 NNDDQEFLNYVKYEHEKSLTKHQLFYFLRDKDRDVAILSLFLGSGIRVSELADLRMEDIN 220

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKP 237
             +  + +  KG+K   V + P     + +Y ++      P     N+ L  ++    +P
Sbjct: 221 LKERLIDVIRKGNKEDSVWITPIALNDLEKYMEIRDNKYAPGKELKNVFLSKYKHT-AQP 279

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+    Q  + +  +  G  +S   H LRH+ A  L     D   +   LGH    T  +
Sbjct: 280 LSVRAIQDIVEKYTKAYGKRMS--PHKLRHTLANKLYMEEKDSLQVMQQLGHTSQDTALL 337

Query: 298 YTNV 301
           YT +
Sbjct: 338 YTQL 341


>gi|222080268|ref|YP_002540132.1| integrase/recombinase [Agrobacterium vitis S4]
 gi|221738913|gb|ACM39692.1| integrase/recombinase [Agrobacterium vitis S4]
          Length = 325

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 120/281 (42%), Gaps = 21/281 (7%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSF 98
           YE +      F+AF   +   ++TI ++S     A+I   + + +   +L+   S ++  
Sbjct: 25  YEVEEAVLYRFVAFTRNQFPGLETITEVS---ANAWIEAAQKRAVTPATLQGLTSPVRHL 81

Query: 99  LKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQ-ALTLVDNVLLHTSHETKWIDARN 156
            ++L    +   + +L    L++  + +P   ++++ A         H   +        
Sbjct: 82  ARWLILHDVA--AYVLPTGVLRRPAAYIPHIYSDEELAAFFAQTDRCHYCSDVPLRHLVM 139

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD 215
             +   +Y CGLR SEA  L  +++      L I+  KG K R +P+   +R  +  Y+ 
Sbjct: 140 PVLFRTIYACGLRCSEARLLRVEDVDLATGVLLIRDAKGGKDRQIPVSEPIRVRLAHYH- 198

Query: 216 LCPFD-LNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLR-RYLGLPLSTTAHTLRHSFATH 272
              FD +      P  RG R +  N    F+R++ Q R  + G       H  RHSFA H
Sbjct: 199 -AQFDWMGHEWFFPGRRGQRLRLSNVYNNFRRFLWQARISHGGRGHGPRVHDFRHSFAVH 257

Query: 273 LLSN--------GGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            L N        G  L  +Q+ +GH+ ++ T  Y  + +++
Sbjct: 258 NLRNWFATGKDVGAMLPILQTYMGHYSIADTAYYLRLTAES 298


>gi|159046240|ref|YP_001541912.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|159046542|ref|YP_001542212.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|157913999|gb|ABV95431.1| phage integrase [Dinoroseobacter shibae DFL 12]
 gi|157914301|gb|ABV95731.1| phage integrase [Dinoroseobacter shibae DFL 12]
          Length = 508

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 136/303 (44%), Gaps = 35/303 (11%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P ++SF        WL+    ERG++  T++ Y  +  ++L  L   T E      IR +
Sbjct: 218 PRLISF------SEWLRR---ERGVAPETVRRYLNEVGRWLDSLG-ATPEDYDAAAIRSI 267

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNS 124
              +      + R+Q     S++++++ +++FL++   +     S +  + +   +K ++
Sbjct: 268 ILDQ-----GEERSQS----SVRKTVTVLRAFLRFTIVQGACAPSLLHAVPSAVRRKLST 318

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           +PR +   +    ++ +L     +T  ++ R+ AIL LL    LR  +   L   +I   
Sbjct: 319 VPRTIPTAK----IEEILASCRTDTP-VEIRDRAILLLLARLALRAGDIWQLHLSDIDWR 373

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLN----LNIQLPLFRGIRGKPLN 239
            S LR+ GKG +  ++PL   V  A+L Y  D  P   +    L +Q P F  +R     
Sbjct: 374 TSRLRLHGKGRRGVMMPLPQDVGDALLVYIEDARPVVASNRVFLRVQAP-FTPLRSSAEI 432

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            G+  R    L R     L T +H  RHS A+  L  G DL  I + L H    TT IY 
Sbjct: 433 AGIVSRV---LSRGGFTDLPTGSHVFRHSLASAWLRGGADLDLIGAALRHTSRDTTAIYA 489

Query: 300 NVN 302
            V+
Sbjct: 490 KVD 492


>gi|120603820|ref|YP_968220.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
 gi|120564049|gb|ABM29793.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
          Length = 356

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 118/267 (44%), Gaps = 37/267 (13%)

Query: 43  TRQFLI----FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL---KRSLSGI 95
           +R++LI    FL  +    ++   +  L YT+I A + K    K G+R+L   +R L  +
Sbjct: 81  SRRWLIEITGFLNNHILPALSTTPLDNLRYTDIIALVDK----KWGNRTLATRQRYLGYL 136

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
           K+  ++  +   T  + +   R  K+        N +  L  ++ +L H +   +W    
Sbjct: 137 KALFRFGVEHGFTKNNPLSKWRKTKEPKR-----NLRLTLEGLELILAHAAPHLRWA--- 188

Query: 156 NSAILYLLYGCGLRI--SEALSLTPQNIMDDQSTLRIQGKG--DKIRIVPLLPSVRKAIL 211
               L + +  G R   +E   L   ++  ++ T+ ++G    +  R +P++P  R  + 
Sbjct: 189 ----LEVEWEIGTRPGPTELFDLKWDDVDFERCTILVRGTKTHEANRTLPIMPEFRDRLQ 244

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           +       +  +          +GKP+        +R   R  GLP     + +RH FAT
Sbjct: 245 KVMREQGGEYIITY--------KGKPVL--RMNTALRGACRRAGLPYHVRMYDIRHLFAT 294

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIY 298
            +L+NG DL ++  +LGH  ++TTQ +
Sbjct: 295 VMLANGSDLAAVSKLLGHSTIATTQAH 321


>gi|223983261|ref|ZP_03633454.1| hypothetical protein HOLDEFILI_00734 [Holdemania filiformis DSM
           12042]
 gi|223964754|gb|EEF69073.1| hypothetical protein HOLDEFILI_00734 [Holdemania filiformis DSM
           12042]
          Length = 343

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 67/166 (40%), Gaps = 34/166 (20%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI+ LL   G+R+ E + L   +I  +     + GKG+K R V              
Sbjct: 187 RDLAIIDLLSSTGMRVGELVKLNINDIDFENRECVVFGKGNKERPVY------------- 233

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVF---------------QRYIRQLRRYLGLPLS 259
               FD    I L  +   R    NP +F               +  +RQL R LG+   
Sbjct: 234 ----FDARTKIHLKNYLNTRNDD-NPALFVSLDLPHDRLKISGVEIRLRQLGRRLGIS-K 287

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
              H  R + AT  +  G  +  +QS+LGH ++ TT  Y  VN  N
Sbjct: 288 VHPHKFRRTVATKAIDKGMPIEQVQSLLGHSQIDTTMHYAMVNQNN 333


>gi|301060695|ref|ZP_07201510.1| tyrosine recombinase XerC family protein [delta proteobacterium
           NaphS2]
 gi|300445092|gb|EFK09042.1| tyrosine recombinase XerC family protein [delta proteobacterium
           NaphS2]
          Length = 85

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 33/52 (63%)

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           P   + H+LRHS+ATH+L  G DL  +Q ILGH  + TT  YT++ S  G +
Sbjct: 14  PKKISCHSLRHSYATHMLEAGVDLIELQQILGHVSVLTTTRYTHLTSNTGNN 65


>gi|301024203|ref|ZP_07187907.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 69-1]
 gi|300396658|gb|EFJ80196.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 69-1]
          Length = 179

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 66/157 (42%), Gaps = 21/157 (13%)

Query: 159 ILYLLYGCGLRISEALSLT------------PQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
           ++ L Y  GLR+SE LSL              Q I +  ST+    K + I I   L   
Sbjct: 1   MILLAYFHGLRVSELLSLQLSDLELTTEKIYIQRIKNGFSTVHPLQKEEVIAITNWLNER 60

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
               +++++  P+         LF    GKPL+   F   +    +  GL +    H LR
Sbjct: 61  NSLNVKHFNDNPW---------LFVSRTGKPLSRQRFYNIVSAAGKNAGLNIKVHPHMLR 111

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           H+    L  NG D R IQ  LGH  +  T IYT  NS
Sbjct: 112 HACGYSLADNGVDTRLIQDYLGHRNIRHTVIYTASNS 148


>gi|270339765|ref|ZP_06005963.2| transposase [Prevotella bergensis DSM 17361]
 gi|270333760|gb|EFA44546.1| transposase [Prevotella bergensis DSM 17361]
          Length = 131

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 4/76 (5%)

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
           +LP+F G+     +P    R +++     G+    T H  RHS+AT  L+ G D+ ++  
Sbjct: 40  ELPVFAGLP----DPSWINRPVKKWVEAAGISKHITFHCFRHSYATLQLAGGTDIYTVSK 95

Query: 286 ILGHFRLSTTQIYTNV 301
           +LGH  + TTQ+Y  V
Sbjct: 96  MLGHTNVRTTQVYAKV 111


>gi|239628066|ref|ZP_04671097.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518212|gb|EEQ58078.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 293

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 132/295 (44%), Gaps = 43/295 (14%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           + E Q++L+N E     ++ T+  Y  D ++ L+F+    EE      + + S  E R +
Sbjct: 6   INEFQSYLRNEE----KAEATISKYLHDVKEMLVFI----EE----MDLNKESLIEYRKY 53

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +S     +   +++   LS I +FLK+    K   E   L ++ LK    +   ++EK+ 
Sbjct: 54  LS----SQYKPQTVNGKLSAINAFLKF----KDLLE---LKVKFLKVQKRV--YVDEKRE 100

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYL---LYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           LT  D   L  + +       N  + YL   LYG G+RISE   +T + I   ++ + ++
Sbjct: 101 LTEQDFKRLIAAADRNG----NKQLYYLMMVLYGTGIRISELPFVTVEAIETGRAEISMK 156

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLN-PGVFQRYIRQ 249
           GK    R++    ++ + + EY  +       NI Q  +FR   G+ L+   ++    R 
Sbjct: 157 GK---YRVIIFPKNLVRLLKEYTKVS------NIRQGCIFRTRSGRNLDRSNIYHSMKRL 207

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            R     P     H  RH FA    S   +L  +  ILGH  + TT+IY   + K
Sbjct: 208 CRDAQVQPSKVFPHNFRHLFAKCFYSIEKNLSHLADILGHSSIETTRIYVAASIK 262


>gi|9507462|ref|NP_052469.1| resolvase [Plasmid ColIb-P9]
 gi|32470177|ref|NP_863401.1| hypothetical protein R64_p046 [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|194447254|ref|YP_002043869.1| resolvase [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|300904883|ref|ZP_07122706.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|301305699|ref|ZP_07211787.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|4512459|dbj|BAA75108.1| resolvase [Plasmid ColIb-P9]
 gi|20521545|dbj|BAB91609.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|70610211|gb|AAZ05358.1| resolvase [Salmonella enterica]
 gi|194405558|gb|ACF65779.1| resolvase [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|300403216|gb|EFJ86754.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|300839039|gb|EFK66799.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|315253185|gb|EFU33153.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 85-1]
 gi|321271591|gb|ADW79679.1| site-specific recombinase [Salmonella enterica subsp. enterica
           serovar Kentucky]
 gi|321271691|gb|ADW79778.1| putative site-specific recombinase [Escherichia coli]
          Length = 259

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 36/180 (20%)

Query: 153 DARNSAILYLLYGCGLRISEAL-------SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           D R   +L  L+  G RI+EAL       SLTP       +TL+ Q      R    +P+
Sbjct: 57  DLRRKMLLATLWNTGARINEALALTRGDFSLTPPYPFVQLATLK-QRTEKAARTAGRMPA 115

Query: 206 VRKAILEYYDLCPFD----------LNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRY 253
            ++     + L P            +   +++P+ R  +  G+     +++   R +R +
Sbjct: 116 GQQT----HRLVPLSDAWYVSQLQTMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTW 171

Query: 254 LG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +G              +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 172 IGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|317123483|ref|YP_004097595.1| integrase [Intrasporangium calvum DSM 43043]
 gi|315587571|gb|ADU46868.1| integrase family protein [Intrasporangium calvum DSM 43043]
          Length = 357

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 107/271 (39%), Gaps = 24/271 (8%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           IT Q   +L    ++A ++      +   ++ R LS I  F  YL+ R     + +    
Sbjct: 73  ITAQRTGRLEPGPVQAVVADGEPAGVATSTVARRLSSISGFFGYLQARGDVVVNPVPRGL 132

Query: 118 NLKKSNSLPRALNEKQALTLVDNVL----LHTSHETKWIDA-----RNSAILYLLYGCGL 168
             ++    P      Q + L   V     + T  E   +       R+ A++  +   GL
Sbjct: 133 PTRRERQRP-----SQGVPLTRRVWRLSRILTPAEVDALTGALRTHRDRAMVAAMVLGGL 187

Query: 169 RISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQ 226
           R  E L L   ++   +  L I +GKG   R+VP+       +  Y +   P     +  
Sbjct: 188 RRCEVLGLRMGDVRVAERRLFIAEGKGGHQRLVPVSSRFFTELASYLEAERPRATGTDRV 247

Query: 227 LPLFRGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI-- 283
             + RG  RG PL+       +   RR  GL    T H LRH+  T L   G  L ++  
Sbjct: 248 FVVLRGPNRGNPLSVRGIDEVLAGARRRAGL-AHATCHELRHTCLTRLREAGMALEAVQA 306

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           Q+  GH  + +T+IY ++      DW+   Y
Sbjct: 307 QAQAGHDSIESTRIYLHLAD----DWLASQY 333


>gi|237800512|ref|ZP_04588973.1| Phage integrase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331023372|gb|EGI03429.1| Phage integrase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 137

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 14/120 (11%)

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG------ 241
           L++ GKG K+R +P+ P     I +Y +     L  N ++PLF  +RGK    G      
Sbjct: 6   LKVHGKGGKVRYLPMHPVAAGRIHQYLESSGHHL-ANRKVPLFIPLRGKLTGTGITANGI 64

Query: 242 --VFQRYIRQLRRYL-GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             V   Y ++    + GL +    H LR + AT+ L +  D+  +Q  LGH  +STT+IY
Sbjct: 65  YTVVTAYAKKAEIEVDGLGV----HGLRATAATNALEHEADIAKVQLWLGHANISTTKIY 120


>gi|321271492|gb|ADW79581.1| putative site-specific recombinase [Escherichia coli]
 gi|332346551|gb|AEE59883.1| putative site-specific recombinase [Escherichia coli UMNK88]
          Length = 262

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 97/228 (42%), Gaps = 52/228 (22%)

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHT-------SHETKWI-----DARNSAILYLLYGC 166
           L    +LP A++   AL L    ++H        + E   +     D R   +L  L+  
Sbjct: 14  LTPPATLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPDLRRKMLLATLWNT 73

Query: 167 GLRISEAL-------SLTPQNIMDDQSTL------------RIQGKGDKIRIVPLLPSVR 207
           G RI+EAL       SLTP       +TL            R+       R+VPL  +  
Sbjct: 74  GARINEALALTRGDFSLTPPYPFVQLATLKQRTEKAARTAGRMPAGQQTHRLVPLSDAWY 133

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG---------- 255
            + L+        +   +++P+ R  +  G+     +++   R +R ++G          
Sbjct: 134 VSQLQ-------TMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTWIGEAVAAAAADG 186

Query: 256 --LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 187 VTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 234


>gi|295092319|emb|CBK78426.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
 gi|295114672|emb|CBL35519.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1]
          Length = 281

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 9/150 (6%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
           +R S IL  L   G+RISE + +T + +   ++ + ++GK    R+V +LP   +  +E 
Sbjct: 125 SRLSLILQTLGATGIRISELVCITREAVSSGRAAVNLKGK---TRVV-ILPKRLREKMEI 180

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATH 272
           Y  C    N     P+F    GKP++       ++ L +  G+       H LRH FA  
Sbjct: 181 Y--C--RENQIYSGPVFVTRGGKPVDRSNIWSEMKILCKTAGINEKKIFPHNLRHLFARI 236

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              N  D+  +  ILGH  + TT+IYT+++
Sbjct: 237 YYKNNHDIVYLADILGHSSVETTRIYTSIS 266


>gi|253565255|ref|ZP_04842710.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|251945534|gb|EES85941.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
          Length = 182

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 71/144 (49%), Gaps = 16/144 (11%)

Query: 167 GLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPFDLN 222
           GL  S+   L+P++++ D++  L I+    K +I   +P+LP     + +Y D+      
Sbjct: 33  GLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAASILDKYKDVAECTGK 92

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLR 281
           L   LP+    R           Y++++    G+  + + HT RHS+AT + L+NG  + 
Sbjct: 93  L---LPVLCNQR--------MNSYLKEIADVCGIHKNLSTHTARHSYATSICLANGVSME 141

Query: 282 SIQSILGHFRLSTTQIYTNVNSKN 305
           ++  +LGH   + T+ Y  V  +N
Sbjct: 142 NVAKMLGHADTNVTKHYARVLDQN 165


>gi|116622058|ref|YP_824214.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225220|gb|ABJ83929.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 406

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 117/255 (45%), Gaps = 30/255 (11%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTE--SNILNMR 117
           ++I + +  ++  F+ +    ++  R++  + S +++FL++L    ++ T+    ++ +R
Sbjct: 154 KSIARANLADVDGFV-QALAARLSKRTVADTCSSLRAFLRFLHMTGRLPTDLAGGVIALR 212

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             +     PR L        V  +L   S  T     R+ AI+ LL   GL  +E L + 
Sbjct: 213 -YRIDERPPRCLPWSD----VQKILRGIS-RTAAPGKRDYAIVLLLATYGLGAAEVLGIR 266

Query: 178 PQNIMDDQSTLRIQGKGDKIRI-VPLLPSVRKAILEY--YDLCPF----DLNLNIQLPLF 230
            +++      LR+     K+ I +PLLP+V +A+  Y  ++  P      + L   +P  
Sbjct: 267 LEDVDWQGGVLRVCRPKTKVSIELPLLPAVAQALSAYLRWERPPARSVPHIFLRENMPY- 325

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT----AHTLRHSFATHLLSNGGDLRSIQSI 286
                +P+  G  +  IR    Y GL   +T    AH  R S A+  + +G +++ +  I
Sbjct: 326 -----EPITSGAIRHRIRY---YAGLAGISTKVIGAHAFRRSHASRQIDSGANVKVVSDI 377

Query: 287 LGHFRLSTTQIYTNV 301
           LGH   S+T +Y  V
Sbjct: 378 LGHRSSSSTSVYVRV 392


>gi|10955421|ref|NP_053133.1| resolvase [Escherichia coli]
 gi|190014958|ref|YP_001965470.1| Putative resolvase [Escherichia coli]
 gi|191174386|ref|ZP_03035890.1| resolvase [Escherichia coli F11]
 gi|215276275|ref|YP_002332238.1| putative resolvase [Escherichia coli O127:H6 str. E2348/69]
 gi|218511244|ref|YP_002415702.1| putative resolvase (Protein D) [Escherichia coli 55989]
 gi|218692932|ref|YP_002406044.1| Resolvase [Escherichia coli UMN026]
 gi|256026287|ref|ZP_05440152.1| resolvase (protein D) [Escherichia sp. 4_1_40B]
 gi|256855302|ref|YP_003162546.1| putative resolvase [Escherichia coli]
 gi|293404649|ref|ZP_06648642.1| resolvase [Escherichia coli FVEC1412]
 gi|300897136|ref|ZP_07115593.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|6009447|dbj|BAA84906.1| Resolvase [Escherichia coli]
 gi|109389679|gb|ABG29598.1| Putative resolvase [Escherichia coli]
 gi|190905319|gb|EDV64954.1| resolvase [Escherichia coli F11]
 gi|215267871|emb|CAS07541.1| putative resolvase [Escherichia coli O127:H6 str. E2348/69]
 gi|218350095|emb|CAQ87514.1| Resolvase [Escherichia coli UMN026]
 gi|218359345|emb|CAU95831.1| putative resolvase (Protein D) [Escherichia coli 55989]
 gi|256275514|gb|ACU68787.1| putative resolvase [Escherichia coli]
 gi|281181668|dbj|BAI57997.1| resolvase [Escherichia coli SE15]
 gi|291428361|gb|EFF01387.1| resolvase [Escherichia coli FVEC1412]
 gi|300359078|gb|EFJ74948.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|315290869|gb|EFU50238.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 153-1]
 gi|324005322|gb|EGB74541.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 57-2]
 gi|324015231|gb|EGB84450.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 60-1]
          Length = 269

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 40/182 (21%)

Query: 153 DARNSAILYLLYGCGLRISEALSLT-------PQNIMDDQSTL--------RIQGK---G 194
           D R   +L  L+  G RI+EAL+LT       P       +TL        R  G+   G
Sbjct: 66  DLRRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRTPAG 125

Query: 195 DKI-RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR 251
            +  R+VPL  S   + L+        +   +++PL R  +  G+     +++   R +R
Sbjct: 126 QQTHRLVPLSDSWYVSQLQ-------TMVATLKIPLERRNKRTGRTEKARIWEVTDRTVR 178

Query: 252 RYLG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            ++G              +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT
Sbjct: 179 TWIGEAVAAAATDGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYT 238

Query: 300 NV 301
            V
Sbjct: 239 KV 240


>gi|206579294|ref|YP_002238658.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
 gi|206568352|gb|ACI10128.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
          Length = 332

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 10/160 (6%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK---IRIVPLLPSVRKA 209
           D R   +L L Y CGLR  E  ++   +I   Q  L ++ +  K    R+VP  P   + 
Sbjct: 149 DIRTRFMLALAYDCGLRREELCTVATGDIDPSQRLLTVRAEHTKNRFGRVVPYSPVTGEL 208

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGI----RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              +  L    +  + + PLF       R +P++   + + +R L      PL +T HT 
Sbjct: 209 YTAW--LTERRMLSSSRGPLFLSRSPRNRAEPISNWTWSKVVRGLALKADFPLIST-HTF 265

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           RH   T L   G D+  I +  GH R+ +T +Y ++++++
Sbjct: 266 RHLCLTELARVGWDIHEIAAFAGHRRIQSTLLYIHLSARD 305


>gi|159904504|ref|YP_001548166.1| integrase family protein [Methanococcus maripaludis C6]
 gi|159885997|gb|ABX00934.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 324

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 131/298 (43%), Gaps = 23/298 (7%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +E+  +++    ER    +   +   D  +  +FLAF  E ++    +    + +   ++
Sbjct: 21  EEQNKYVKKFREEREFDNIKKTTILNDIVRLRVFLAFCEELEMEPFELSTHDFVKFFNYL 80

Query: 76  SKRRTQKIGDRSLKRSLSGIKSF---LKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + RR   I  ++  +  + +K F   L+Y   R+   ESN  N +   K         + 
Sbjct: 81  TNRRNCSITTQN--KYFNLLKVFYRLLRYENFREFEIESN--NRKRFTKYEKKHYDTIDF 136

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +  T +   ++ ++  TK    R++ ++ +L+  G R SEAL++  ++   ++   RI+ 
Sbjct: 137 ETYTKILKEVVLSNSRTK---VRDALLIRVLWETGCRRSEALNIRYKDCDLEKGRFRIRD 193

Query: 193 -KGDKIRIVPLLPSVRKAILEYY------DLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQ 244
            K  + R V +     K +++Y       D   F     +    F G R KP     VF+
Sbjct: 194 TKTYEERTVVVSEDTLKIVIDYIKQNLRRDADDFIFQNEVT---FNGKRVKPDWVTAVFK 250

Query: 245 RYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           + + +L+    +P       H+LRH  AT LL  G  +  ++ ILGH  L TT  Y++
Sbjct: 251 KAVNKLKEDGAIPKGRRVVVHSLRHGRATDLLDKGVPIDIVKEILGHKSLETTLYYSH 308


>gi|227887411|ref|ZP_04005216.1| phage integrase family site-specific recombinase [Escherichia coli
           83972]
 gi|300983731|ref|ZP_07176712.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 45-1]
 gi|301049115|ref|ZP_07196096.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 185-1]
 gi|227835761|gb|EEJ46227.1| phage integrase family site-specific recombinase [Escherichia coli
           83972]
 gi|300299061|gb|EFJ55446.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 185-1]
 gi|300408460|gb|EFJ91998.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 45-1]
 gi|315292311|gb|EFU51663.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 153-1]
          Length = 179

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 66/157 (42%), Gaps = 21/157 (13%)

Query: 159 ILYLLYGCGLRISEALSLT------------PQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
           ++ L Y  GLR+SE LSL              Q I +  ST+    K + I I   L   
Sbjct: 1   MILLAYFHGLRVSELLSLQLSDLELTTEKIYIQRIKNGFSTVHPLQKEEVIAITNWLNER 60

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
               +++++  P+         LF    GKPL+   F   +    +  GL +    H LR
Sbjct: 61  NSLNVKHFNDNPW---------LFVSRTGKPLSRQRFYNIVSAAGKNAGLNIKVHPHMLR 111

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           H+    L  NG D R IQ  LGH  +  T IYT  NS
Sbjct: 112 HACGYSLADNGVDTRLIQDYLGHRNIRHTVIYTASNS 148


>gi|256826767|ref|YP_003150726.1| site-specific recombinase XerD [Cryptobacterium curtum DSM 15641]
 gi|256582910|gb|ACU94044.1| site-specific recombinase XerD [Cryptobacterium curtum DSM 15641]
          Length = 307

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 70/149 (46%), Gaps = 18/149 (12%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY 213
           ++ L+   GLR SEAL L P +      T+ +    D  R    +P     SVRK  L++
Sbjct: 140 LILLIAKTGLRFSEALGLMPADFDFTHQTVSVNKTWDYKRNGGFVPTKNVSSVRKVQLDW 199

Query: 214 ---YDLCPFDLNLNIQLPLFRGIRGKPLNP---GVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                L      L  + P+F  + GK  N    GV  R+ ++     G+P+  T H LRH
Sbjct: 200 QLVMQLAGLLKELPAEKPIF--VDGKVYNSTANGVLARHCKRA----GVPV-ITIHGLRH 252

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           + A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 253 THASLLLFAGVSIASVSRRLGHASMTTTQ 281


>gi|116006838|ref|YP_788021.1| resolvase (protein D) [Escherichia coli]
 gi|115500693|dbj|BAF33924.1| resolvase (protein D) [Escherichia coli]
          Length = 278

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 40/182 (21%)

Query: 153 DARNSAILYLLYGCGLRISEALSLT-------PQNIMDDQSTL--------RIQGK---G 194
           D R   +L  L+  G RI+EAL+LT       P       +TL        R  G+   G
Sbjct: 66  DLRRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRTPAG 125

Query: 195 DKI-RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR 251
            +  R+VPL  S   + L+        +   +++PL R  +  G+     +++   R +R
Sbjct: 126 QQTHRLVPLSDSWYVSQLQ-------TMVATLKIPLERRNKRTGRTEKARIWEVTDRTVR 178

Query: 252 RYLG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            ++G              +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT
Sbjct: 179 TWIGEAVAAAATDGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYT 238

Query: 300 NV 301
            V
Sbjct: 239 KV 240


>gi|19848931|gb|AAL93615.1| integrase [Streptococcus thermophilus]
 gi|312278498|gb|ADQ63155.1| Integrase [Streptococcus thermophilus ND03]
          Length = 359

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 7/143 (4%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           LY++   G+R +E L LT  +I  D   L +    D       +P+  K+ +    L   
Sbjct: 193 LYIIAKTGIRFAECLGLTVDDIKRDTGMLSVNKTWDYKNNTGFMPTKTKSSIREIPLDDE 252

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
            +N   Q+P     R   L P +    + + LR+ +G  +    H+LRH++A++L+++  
Sbjct: 253 FINFIDQMPPTDDGR---LLPSLSNNAVNKTLRKIVGREVR--VHSLRHTYASYLIAHDI 307

Query: 279 DLRSIQSILGHFRLSTT-QIYTN 300
           DL S+  +LGH  L+ T ++Y +
Sbjct: 308 DLISVSQVLGHENLNITLEVYAH 330


>gi|67077907|ref|YP_245527.1| site-specific tyrosine recombinase XerS [Bacillus cereus E33L]
 gi|66970213|gb|AAY60189.1| tyrosine recombinase [Bacillus cereus E33L]
          Length = 358

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 126/304 (41%), Gaps = 42/304 (13%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK---------RRTQKIGD 85
           TL +Y  D R F  +L   +E+ I ++ I+ +S++++     K         +  Q + +
Sbjct: 43  TLLNYVYDFRVFFKWLL--SEQIIELKPIKDISFSDLENLKKKDVENFMRFLKLQQNMQN 100

Query: 86  RSLKRSLSGIKSFLKYL------------------KKRKITTESNILNMRNLKKSNSLPR 127
            S+ R +S +KS  KYL                   K +I  +   LN R  +  + +  
Sbjct: 101 SSVNRKISALKSLFKYLTSLSENEDGECYFYRNVMAKIEIHKDKETLNARAKRMRSKIFH 160

Query: 128 ALNEKQALTLV--DNVLLHTSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIM 182
             ++++ L  V  ++    T H+  +      R+ AIL L  G G+R+SE   L  ++I 
Sbjct: 161 NDDDQEFLNYVKYEHEKSLTKHQLFYFLRDKDRDVAILSLFLGSGIRVSELADLRMEDIN 220

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKP 237
             +  + +  KG+K   V + P     + +Y  +      P     N+ L  ++    +P
Sbjct: 221 LKERLIDVIRKGNKEDSVWITPIALNDLEKYMGIRDNKYAPGKELKNVFLSKYKHT-AQP 279

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+    Q  + +  +  G  +S   H LRH+ A  L     D   +   LGH    T  +
Sbjct: 280 LSVRAIQDIVEKYTKAYGKKMS--PHKLRHTLANKLYMEEKDSLQVMQQLGHTSQDTALL 337

Query: 298 YTNV 301
           YT +
Sbjct: 338 YTQL 341


>gi|331646987|ref|ZP_08348086.1| resolvase (Protein D) [Escherichia coli M605]
 gi|331044304|gb|EGI16435.1| resolvase (Protein D) [Escherichia coli M605]
          Length = 260

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 93/220 (42%), Gaps = 48/220 (21%)

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL------------LYGCGLRISE 172
           LP A++   AL L    + H  +    +    SA+L+             L+  G RI+E
Sbjct: 18  LPVAIDYPAALALRQMAMQHDDYPKYLLAPEVSALLHYVPDLHRRMLLATLWNTGARINE 77

Query: 173 ALSLT-------PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN--- 222
           AL+LT       P       +TL+ Q      R    +PS  +     + L P   N   
Sbjct: 78  ALALTRGDFSLAPPYPFVQLATLK-QRAEKAARTAGRMPSGSQP----HRLVPLSDNQYV 132

Query: 223 -------LNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG------------LPLSTT 261
                    +++PL R  R  G+     +++   R +R ++G              +  T
Sbjct: 133 SELQMMVATLKIPLERRNRRTGRTEKARLWEITDRTVRTWIGEAVEAAAADGVTFSVPVT 192

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 193 PHTFRHSYAMHMLYAGIPLKVLQSLMGHKSVSSTEVYTKV 232


>gi|296162870|ref|ZP_06845651.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886907|gb|EFG66744.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 417

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 75/155 (48%), Gaps = 8/155 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEY 213
           R  AI+      GLR  E   L+  +I     TL ++  KG +  ++PL  +  +AI  Y
Sbjct: 254 RADAIVRCALDLGLRSGEIARLSLDDIDWQAGTLVLRHTKGRREDMLPLPATTGEAIAAY 313

Query: 214 YDLC-PFDLNLNIQLPLFRGI--RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            +   P   N  I     R I  R +P    + ++ IRQ     GLP  T +H LRH+ A
Sbjct: 314 LEQERPKTSNRAI---FVRHIAPRDQPAGTDLVRKTIRQAFTRAGLPY-TRSHLLRHTMA 369

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             LL++G  L+ +  +L H  L+TT IY  ++S+ 
Sbjct: 370 NRLLASGSSLKEVADVLRHRSLNTTLIYAKLDSRK 404


>gi|293416320|ref|ZP_06658959.1| resolvase [Escherichia coli B185]
 gi|291431676|gb|EFF04659.1| resolvase [Escherichia coli B185]
          Length = 268

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 97/224 (43%), Gaps = 48/224 (21%)

Query: 121 KSNSLPRALNEKQALTLVDNVLLHT-------SHETKWI-----DARNSAILYLLYGCGL 168
           +  SLP A++   AL L    ++H        + E   +     D R   +L  L+  G 
Sbjct: 22  QPASLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPDLRRKMLLATLWNTGA 81

Query: 169 RISEALSLT-------PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD- 220
           RI+EAL+LT       P       +TL+ Q      R     P+ ++A    + L P   
Sbjct: 82  RINEALALTRGDFSLAPPYPFVQLATLK-QRTEKAARTAGRTPAGQQA----HRLVPLSD 136

Query: 221 ---------LNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG------------LP 257
                    +   +++P+ R  +  G+     +++   R +R ++G              
Sbjct: 137 SWYVSQLQTMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTWIGEAVAAAAADGVTFS 196

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 197 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240


>gi|187922252|ref|YP_001893894.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187713446|gb|ACD14670.1| integrase family protein [Burkholderia phytofirmans PsJN]
          Length = 408

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 125/309 (40%), Gaps = 23/309 (7%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           ++  ++   +++ E   W+  +   RGLS  T Q    + R  L +L  + +   T+   
Sbjct: 102 DSAEDVAIHQVVAEYDAWMTEV---RGLSAGTRQHNRFEARSLLRWLDDHGKNLTTVNVA 158

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
              +Y   R    +RRT+     ++  +L G+  +L    +  I   S  +   +     
Sbjct: 159 DLDAYIASRVASMRRRTKG----TMVGTLRGVLRYLHSSGRMSIDL-SVAIEATSAYAME 213

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            +P  +  +     +D VL     +   +  R+ A+L LL   GLR  E L +   ++  
Sbjct: 214 DIPSTIRPED----IDWVLDIVRRDCSPLGRRDYALLTLLTTYGLRAGEVLGMCLSDVDW 269

Query: 184 DQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-- 240
            +  LRIQ  K      +PL+     A+L+Y  LC        +L   RG    P  P  
Sbjct: 270 HRERLRIQHTKTGSCSELPLMRLPADALLDY--LCHGRPVTTQRLIFLRG--RAPYQPLS 325

Query: 241 --GVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
                   I +  R  G  LP     H LRHS A  LLS G  ++ I  +LGH    +T 
Sbjct: 326 GSAALHSMISRRFRAAGVSLPGKRGPHVLRHSRAASLLSGGVSIKVIGDVLGHRSERSTA 385

Query: 297 IYTNVNSKN 305
           +Y  + + +
Sbjct: 386 VYLKLATDD 394


>gi|297566000|ref|YP_003684972.1| integrase family protein [Meiothermus silvanus DSM 9946]
 gi|296850449|gb|ADH63464.1| integrase family protein [Meiothermus silvanus DSM 9946]
          Length = 385

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 25/188 (13%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI------QGKGDKI--------- 197
           D R +  L L+  CGLR  EAL L  Q++     TL +       GK   +         
Sbjct: 198 DPRTALALRLMLACGLRRGEALGLQWQDLDLGAGTLTVTRAWTDDGKRGVLTLPKTHTSG 257

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRG-IRGKPLNPGVFQRYIRQLRRY 253
           R VP+  +  + + +Y     +   L    P   +F G    KPLNP      ++++   
Sbjct: 258 RTVPIPHATLERLQQYRAW--YAERLGDPRPEAWVFPGNDPSKPLNPHAPNWALKRITER 315

Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMM 311
           LG+ PL    H LRHS+ +H+L+NG  L  +   +GH   + T  +Y +V       W++
Sbjct: 316 LGIGPLRV--HDLRHSYGSHMLANGAPLELVSERMGHANANITLGVYRHVLEHERKGWII 373

Query: 312 EIYDQTHP 319
           +  D   P
Sbjct: 374 DPEDLLGP 381


>gi|170756250|ref|YP_001782987.1| phage integrase family site specific recombinase [Clostridium
           botulinum B1 str. Okra]
 gi|169121462|gb|ACA45298.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum B1 str. Okra]
          Length = 199

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 91/196 (46%), Gaps = 12/196 (6%)

Query: 122 SNSLPRALNEKQALTLVDNVLL-HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           SN+  + L +++A+ L + ++    SH       R+ A+  + Y CGLR SE   +   +
Sbjct: 5   SNNKMKYLTQQEAIRLFNAIIFSDNSHA-----VRDLALFRVAYRCGLRASEISLIKLDD 59

Query: 181 IMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
              D+  L  +  KG     + L  + +K +  Y  +  + ++ N +  LF+  +  P++
Sbjct: 60  YNADKGDLYCKRLKGSNNNTIRLDVTTKKTLDAY--IRDYKISCNSE-TLFKSQKNNPIS 116

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAH--TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
                  +++  +   +   +  H  TL+H+ A HL  +  D++ +Q  LGH  +S T+I
Sbjct: 117 RQTLDYLMKKYCKIANISDKSKHHFHTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEI 176

Query: 298 YTNVNSKNGGDWMMEI 313
           Y    +K      M++
Sbjct: 177 YFQFTTKQQEKMYMKL 192


>gi|85059870|ref|YP_455572.1| phage integrase [Sodalis glossinidius str. 'morsitans']
 gi|84780390|dbj|BAE75167.1| phage integrase [Sodalis glossinidius str. 'morsitans']
          Length = 329

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 245 RYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           RY+R   + +   LP     H LRH+FA+H + NGG++ ++Q ILGH  +  T +Y +
Sbjct: 250 RYVRDCIKEIAPNLPAGQAVHVLRHTFASHFMMNGGNILALQRILGHSSILQTMVYAH 307


>gi|325270645|ref|ZP_08137243.1| integrase [Prevotella multiformis DSM 16608]
 gi|324987040|gb|EGC19025.1| integrase [Prevotella multiformis DSM 16608]
          Length = 447

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 139/321 (43%), Gaps = 57/321 (17%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + + I+R L    L++Y+      L  L  Y ++K  +  I  LS  + ++FI       
Sbjct: 164 ERIGIDRELKTFKLRTYQ------LSLLHEYVQKKHRVSDI-PLSQLD-KSFIEGFEYYL 215

Query: 83  IGDRSLKRS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             DR LKRS     LS +++ ++   K+ +          + ++    PR + + +   +
Sbjct: 216 TIDRKLKRSSISSALSTLQTIVRMAVKKGVPDFYPFFGY-SYERPKGEPRCITQDELQKI 274

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +D        E +W + R    L++ + C  GL IS+  +L  +NI+ ++  L I+G+  
Sbjct: 275 ID-------LEIEWENYRIVRDLFV-FSCFTGLAISDVRNLREENIVLEEGELCIKGRRM 326

Query: 196 KIRI---VPLLPSVRKAILEY--------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           K +    V +LP     +  Y        +D+   D+ LN       G+     N G   
Sbjct: 327 KTKTPYRVQVLPPALTIMNRYRGIRAGFVFDVPTIDIVLN-------GMHYIQRNIG--- 376

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
                    +G PL  T H  RH+FA+ + LS G  + ++  +LGH  L TTQ+Y  V+S
Sbjct: 377 ---------MGTPL--TFHMARHTFASIITLSAGVPIETVSRMLGHTNLRTTQVYAAVSS 425

Query: 304 KNGGDWMMEIYDQTHPSITQK 324
           +     M  I  +   + T K
Sbjct: 426 ERIHRDMQAIQQRIQDTFTLK 446


>gi|124008731|ref|ZP_01693421.1| transposase, putative [Microscilla marina ATCC 23134]
 gi|123985807|gb|EAY25680.1| transposase, putative [Microscilla marina ATCC 23134]
          Length = 428

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 71/145 (48%), Gaps = 14/145 (9%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
            ++ C  GL  S+ + L P+++++       ++ + K   +  +PLLP   K +L+ Y  
Sbjct: 275 FVFQCFTGLAFSDIVDLKPEHLIEQGERTWIIKERVKSSTVAKMPLLPQA-KFVLDKYKD 333

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
            P  L+  + +P+        +  G +  Y+R +   +G+    T+H  R +FAT + + 
Sbjct: 334 DPVCLSKGVLIPV--------ITSGNYNTYLRMIAECVGIDKHLTSHVGRRTFATLVYNA 385

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNV 301
           G D   ++ + GH   + T+IY ++
Sbjct: 386 GTDRSKLKEMTGHTNEAITEIYASL 410


>gi|296185025|ref|ZP_06853435.1| site-specific recombinase, phage integrase family [Clostridium
           carboxidivorans P7]
 gi|296049859|gb|EFG89283.1| site-specific recombinase, phage integrase family [Clostridium
           carboxidivorans P7]
          Length = 199

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 12/156 (7%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL---RIQGKGDK-IRIVPLLPSVRKAI 210
           R+ AI  + Y CGLR SE   +  ++    +  L   R++G  +  IR+     SV    
Sbjct: 34  RDLAIFRVAYRCGLRASEIALIKLEDYNASKGELYCKRLKGSSNNTIRLDIKTKSVLDKY 93

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH--TLRHS 268
           +  Y +      L+   PLF   + KP++       I++      +   T  H  +L+H+
Sbjct: 94  IAKYRI------LSESSPLFVSQQNKPISRQTLDYLIKKYCSLANISDKTKYHFHSLKHT 147

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            A HL  +G D++ +Q  LGH  +S T+IY    +K
Sbjct: 148 TAVHLAESGMDIKELQWWLGHKSVSNTEIYFQFTTK 183


>gi|295841228|dbj|BAJ07009.1| integrase [uncultured bacterium]
          Length = 408

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 109/275 (39%), Gaps = 73/275 (26%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSL---SGIKSFLKYL---KKRKITTESNILN 115
            IRQ SY    A++S  +   +  R   R      G+K+FL+YL   +K    T+   LN
Sbjct: 145 CIRQYSYRTAEAYVSWVKKYFLFHRQRPREALTPDGVKAFLEYLVLVRKVAAGTQKQALN 204

Query: 116 MRNL-------------------KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
             +                    K+  +LP  L+  +   ++             +D   
Sbjct: 205 ALDFFFGEVLGLELGDLGDFARSKRPKNLPVVLSRDETERVLGA-----------LDGTT 253

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVP--LLPSVRKAIL 211
           +    LLYG GLR+ EAL L  +++  D S +++   +GK D+I ++P   L  ++  ++
Sbjct: 254 ALAAGLLYGSGLRLMEALRLRVKDVDFDCSQIQVRDGKGKRDRITVLPERYLEPLKAHLV 313

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGK--PLNPGVF-QRYI-------------RQLRRYL- 254
               +   DL  N     F    G+  P  P  +  +YI             R +R +L 
Sbjct: 314 RVKAVHESDLGQNYAGTTFWPSLGRKYPYAPRQWIWQYIFPSSRLAVDPQTGRSIRHHLH 373

Query: 255 ---------------GLPLSTTAHTLRHSFATHLL 274
                          G+    T HTLRHSFATHLL
Sbjct: 374 ETVLQRAVKAAAARAGISKRVTCHTLRHSFATHLL 408


>gi|158320580|ref|YP_001513087.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
 gi|158140779|gb|ABW19091.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
          Length = 405

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 105/234 (44%), Gaps = 23/234 (9%)

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN----EKQALTL--V 138
           +R+L R  S +    K+L + +I  E+       ++     P A+     ++ AL L  V
Sbjct: 157 NRALGRKKSSLSVLFKFLYRDEIVKENITDGFNPIRLPKQEPDAIKRLEIDEVALMLDAV 216

Query: 139 DNVLLHTSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           D+    T  E K+ +    R+ AIL L    GLR+SE   L   +   ++   RI  K  
Sbjct: 217 DSGEHFTESEKKYWEKTKLRDKAILVLFVTYGLRLSELEQLNLSSFNFNRGEFRIYRKRG 276

Query: 196 KIRIVPLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-R 251
           K  ++P+  +    I +Y +        L+   +  LF  ++ K +      R IR L +
Sbjct: 277 KEVLMPINKTCEIVIKDYVENERTSSELLDDENKDALFLSLQNKRMTT----RAIRNLVK 332

Query: 252 RYLGLPLSTTA------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           +Y  + L TT       H LR + AT L+  G  +  +Q++L H  ++TTQ+Y 
Sbjct: 333 KYTAIVLGTTKENGYSPHKLRATAATSLIQQGFSIYDVQNLLDHDNVTTTQLYA 386


>gi|94264589|ref|ZP_01288374.1| Phage integrase [delta proteobacterium MLMS-1]
 gi|93455007|gb|EAT05241.1| Phage integrase [delta proteobacterium MLMS-1]
          Length = 353

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 17/168 (10%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPF- 219
           LLY  G+RI EA +LT ++       + I +GK  K R +PL PS    +L  Y   P  
Sbjct: 152 LLYTTGIRIGEAFALTLKDFQQKHDLIYIAEGKFKKARWLPLHPST-SLMLNQYVAHPLR 210

Query: 220 -DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA----HTLRHSFATHLL 274
                    PLF  +R   L+        RQL     +  +T      H LRH+FA H L
Sbjct: 211 GGGTRTPDSPLFINLRAARLHHCTVHHAFRQLLEQSDIAHNTLPRPRIHDLRHTFAVHKL 270

Query: 275 ----SNGGDLRS----IQSILGHFRLSTTQIYTNVNSKNG-GDWMMEI 313
                +GGD+ +    + + +GH  +++T+  TN N   G G ++ EI
Sbjct: 271 LAWYRDGGDVNARLPVLATYMGHVNITSTRQATNGNFAMGDGRFLDEI 318


>gi|306825473|ref|ZP_07458813.1| phage integrase family prophage LambdaSa2 [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|304432411|gb|EFM35387.1| phage integrase family prophage LambdaSa2 [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
          Length = 281

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 28/164 (17%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD--------------KI 197
           +D ++ A++YL+   G+R +E L LT  N+  D   L +    +               I
Sbjct: 106 MDVQSYAVIYLIAVTGMRFAECLGLTWDNVDHDNKLLAVDKTWNYKTNLDFSATKTKSSI 165

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R +PL     K +L+ Y    +  N   +  +F  I    +N        + LRR +G  
Sbjct: 166 RKIPLDDETLK-LLKIYQKEHWIHNK--ENRIFSNISNNAVN--------KTLRRIVGRN 214

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTN 300
           +   AH+LRH++A+ L+S   +L SI  ILGH  ++ T ++Y +
Sbjct: 215 IH--AHSLRHTYASFLISQRVELLSISKILGHENMNITIEVYAH 256


>gi|254495557|ref|ZP_05108480.1| Phage integrase [Legionella drancourtii LLAP12]
 gi|254355240|gb|EET13852.1| Phage integrase [Legionella drancourtii LLAP12]
          Length = 229

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 95/211 (45%), Gaps = 20/211 (9%)

Query: 105 RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLY 164
           RK+    +++  + +K  NSL RA  E    T +D +++  +  T     R++ ++ L Y
Sbjct: 31  RKVCYTRSMMPPKKIK--NSLLRA-REYLTPTEIDKLIV-AARRTGRHGKRDATMILLAY 86

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILEYYDLCPFDLNL 223
             GLR+SE +SL    I  +Q    +  + + +    PL  +  +A+ +          L
Sbjct: 87  RHGLRVSELISLCWTQIDLEQGVFHVIRRKNGLSTHHPLFGAELRALRQ----------L 136

Query: 224 NIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
               P    +F   R  P+    F++ + +      L LS   H LRHS    L ++G D
Sbjct: 137 KRDYPETDYVFMTERKAPITGDTFRKIVARAGEVAKLGLSVHPHMLRHSTGYKLANDGRD 196

Query: 280 LRSIQSILGHFRLSTTQIYTNVNS-KNGGDW 309
            RSIQ  LGH  +  T  YT +++ +  G W
Sbjct: 197 TRSIQHYLGHKNIQNTVRYTEMSATRFKGFW 227


>gi|212695232|ref|ZP_03303360.1| hypothetical protein BACDOR_04770 [Bacteroides dorei DSM 17855]
 gi|212662142|gb|EEB22716.1| hypothetical protein BACDOR_04770 [Bacteroides dorei DSM 17855]
          Length = 411

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 22/153 (14%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDD----------QSTLRIQGKGDKIRIVPLLPSVRKA 209
            ++ C  GL  S+  SL  +N++ D          +  L  + K   I  +PLLP V  A
Sbjct: 250 FVFACFTGLAFSDVASLNKENLVQDNLGDWWIRKGRVKLEHRRKASSISNIPLLP-VPLA 308

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           ILE Y   P  +     LP+    +           Y++++  + G+  + T H  RH+F
Sbjct: 309 ILEKYKEHPTCIKKGCCLPVMCNQK--------MNSYLKEIADFCGIKKNLTTHVARHTF 360

Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T + L+N   L+ +  +LGH     TQ Y  V
Sbjct: 361 GTTVTLANNVPLQDVSVMLGHASTRMTQHYARV 393


>gi|150395893|ref|YP_001326360.1| phage integrase family protein [Sinorhizobium medicae WSM419]
 gi|150027408|gb|ABR59525.1| phage integrase family protein [Sinorhizobium medicae WSM419]
          Length = 343

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 69/158 (43%), Gaps = 18/158 (11%)

Query: 152 IDARNSAILYL---LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
           I +R+   LYL   L   G R+ EA+ L   +I + ++T  +   G + R VPL    + 
Sbjct: 187 IASRSELYLYLSIFLVDTGARLGEAIDLKWNDIHEGRATFWVTKSG-RSRTVPLTLRAKD 245

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           A+ +  D  P   +  I    FR I     ++ G            LG       H LRH
Sbjct: 246 ALKKVADRSPGPFS-RIDQQKFRAIWNAAKVDAG------------LGDEEDIVPHILRH 292

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           + A+ L+  G DLR +Q  LGH  L  T  Y ++ S +
Sbjct: 293 TCASRLVRGGIDLRRVQMWLGHQTLEMTMRYAHLASHD 330


>gi|2078344|gb|AAB54012.1| transposase-like [Mycobacterium gordonae]
          Length = 369

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 91/211 (43%), Gaps = 26/211 (12%)

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
            G + FL ++ K    +   I     LK    LPR L   +   ++D             
Sbjct: 144 GGWRPFLHHISKGTPRSRRVI----ALKTPKKLPRVLAPNEVQAILDGCG---------- 189

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLR-------IQGKGDKIRIVPLL 203
             R+  +  +LY  G+RI EAL L   +I   +++ T+R        + K    R +P+ 
Sbjct: 190 RLRDRLLFAVLYDTGMRIGEALGLRHNDIAAAENEVTVRRRDNANGARAKSQTDRTIPVS 249

Query: 204 PSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            ++ +     +     DL+ + + + L+   +G PL  G     +R+LRR  G+      
Sbjct: 250 SALIRLWPTTFTASYGDLDSDYVFVNLWGRPQGYPLTYGAVYDLVRRLRRRTGIDFDP-- 307

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           H LRH+ AT LL +G  +  +  +LGH  ++
Sbjct: 308 HWLRHTAATRLLRDGVSIEVVAHLLGHAHVA 338


>gi|314935048|ref|ZP_07842407.1| prophage L54a, integrase [Staphylococcus caprae C87]
 gi|313652978|gb|EFS16741.1| prophage L54a, integrase [Staphylococcus caprae C87]
          Length = 405

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 123/285 (43%), Gaps = 39/285 (13%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKK 121
           ++ ++   ++  I+   T+ +  + +K  LS IK+ ++Y +K+  IT  S I ++   KK
Sbjct: 114 VQNMNADVLQDLINSSLTEGLSHKVVKDDLSIIKNIIRYTQKKYNITDISYIDDVIVPKK 173

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL----LYGC---------GL 168
           + ++     +++    ++ V L  + E K I A N    Y+    L+           G+
Sbjct: 174 ATTIEEVKAKRENYLEMNEVHL-IAEELKRI-ANNKRASYMKRSYLFTAYIIEFQVLNGM 231

Query: 169 RISEALSLTPQNIMDDQSTLRIQGK------------------GDKIRIVPLLPS----V 206
           RI E L++ P+NI      L I G                       R + L       +
Sbjct: 232 RIGELLAIQPENIDFKNKKLIIDGTIHWRKERNNVGFKDTTKTASSYRTISLTTRSCDIL 291

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           RK +LE      ++     +  +F   RG PL+     R I+   + +G+    T+HT+R
Sbjct: 292 RKVMLENKKAVQWEKMYVDRDFIFTNHRGNPLSLTSINRNIQIAAKNVGIEKHITSHTMR 351

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           HS  + L   G  LR+I   +GH    TT QIY++V  +   D M
Sbjct: 352 HSHISLLSQLGISLRAIMDRVGHTDHKTTLQIYSHVTEQMDKDMM 396


>gi|229021527|ref|ZP_04178126.1| Phage integrase [Bacillus cereus AH1273]
 gi|229027280|ref|ZP_04183546.1| Phage integrase [Bacillus cereus AH1272]
 gi|229035259|ref|ZP_04189194.1| Phage integrase [Bacillus cereus AH1271]
 gi|228728071|gb|EEL79112.1| Phage integrase [Bacillus cereus AH1271]
 gi|228734016|gb|EEL84744.1| Phage integrase [Bacillus cereus AH1272]
 gi|228739760|gb|EEL90158.1| Phage integrase [Bacillus cereus AH1273]
          Length = 360

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 124/290 (42%), Gaps = 47/290 (16%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T Q Y  D   FL ++      K  I TI++LS+ ++  +  +  ++K    +L++ 
Sbjct: 75  SERTKQQYLHDLSHFLRYI------KEAIGTIQELSHNDMEIYFYEL-SKKYAATTLRKK 127

Query: 92  LSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
            + ++ FLKY+      ++  S+ L   ++KK   + R L  ++   ++D        E 
Sbjct: 128 KTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLYPEEVTQILD--------EL 179

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPS 205
           K  +       +LL   GLRI E  +    N++   S     LR+ GKG+K R V +   
Sbjct: 180 KKSNYFVYTAFFLLTTTGLRIEEIATAKWANLVFHSSLNAYLLRVVGKGNKSREVRIFED 239

Query: 206 VRKAILEYYDL----CPFDL-NLNIQLPLFRG--IRGKPLNPGV----------FQRYIR 248
              A+     L       D  N +  LP   G   R   L+  V          F RY R
Sbjct: 240 TLDALCHVRSLRKQTTKLDASNTSAFLPKADGSNYRADYLSSLVAKKIEETNLTFLRY-R 298

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           Q R         T HT RH  A +L+  G +L+ I+  LGH  + TT+ Y
Sbjct: 299 QDR--------ITPHTCRHFMANYLMEKGIELKKIRDYLGHESIMTTERY 340


>gi|157168021|gb|ABV25530.1| IntI1 [Klebsiella pneumoniae]
          Length = 300

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 71/162 (43%), Gaps = 37/162 (22%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207
           LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R         
Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198

Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                                  +A   +     F  + +   P    +R   +    FQ
Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           R  ++     G+    T HTLRHSFAT LL +G D+R++Q +
Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDL 300


>gi|307826179|ref|ZP_07656390.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307732818|gb|EFO03684.1| integrase family protein [Methylobacter tundripaludum SV96]
          Length = 328

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           G F+R +   R  + L     +H LRHSFA+H + NGG++ ++Q ILGH  +S T  Y +
Sbjct: 255 GAFRRAV--TRSEIELQKGQNSHVLRHSFASHFIMNGGNILTLQKILGHADISQTMTYAH 312

Query: 301 VNSKNGGD 308
           +  ++  D
Sbjct: 313 LAPEHLAD 320


>gi|158341027|ref|YP_001522194.1| phage integrase [Acaryochloris marina MBIC11017]
 gi|158311268|gb|ABW32880.1| phage integrase [Acaryochloris marina MBIC11017]
          Length = 351

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 12/186 (6%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS-YTEIRAFISKRRTQKIGDRS 87
           R +S  T ++YE D +QF+     +T++     + R L  Y         +R Q   + +
Sbjct: 48  REISSNTRKAYERDLKQFMD----WTDKGWHEISARDLDRYKNHLKVEPNQRGQLRKNAT 103

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           + R+L+ ++SF K+L  R   T+   L +  LK    LP+  ++ +   L   +     H
Sbjct: 104 INRNLAALQSFFKWLTVRDYITKDPTLLLEKLKADPVLPQEFSQDEVDNLYQAICDRGFH 163

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
                  R+ A+L+L+   GLR SE   L   +    +  +R+  K D +  VPLL   R
Sbjct: 164 TF-----RDRALLHLI-DHGLRASEIHRLNVGDYDGQRIIIRV-AKADSVGTVPLLKKAR 216

Query: 208 KAILEY 213
           KAI +Y
Sbjct: 217 KAIDQY 222


>gi|291009717|ref|ZP_06567690.1| phage integrase family site specific recombinase [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 237

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 5/149 (3%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           +L T +   + D R+ AI+ L YG G R++E  +LT  ++     ++  QGKG K R V 
Sbjct: 60  ILDTCNGKTFTDLRDQAIIRLYYGTGARLAEVANLTTDDLDMATDSVVYQGKGGKSRRVR 119

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLS 259
             P   +A+  Y  L     +    +P L+   RG +PL     +  +++  ++ G+   
Sbjct: 120 FGPKTARALSRY--LRARSRHRAADVPSLWLAARGAQPLQANGIKIMLKRRGKHAGVS-G 176

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILG 288
             AH  RH++A      GGD   +  +LG
Sbjct: 177 VHAHRWRHNYAHAWKLAGGDTGDLMLLLG 205


>gi|255527691|ref|ZP_05394548.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|255508604|gb|EET84987.1| integrase family protein [Clostridium carboxidivorans P7]
          Length = 215

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 12/156 (7%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL---RIQGKGDK-IRIVPLLPSVRKAI 210
           R+ AI  + Y CGLR SE   +  ++    +  L   R++G  +  IR+     SV    
Sbjct: 50  RDLAIFRVAYRCGLRASEIALIKLEDYNASKGELYCKRLKGSSNNTIRLDIKTKSVLDKY 109

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH--TLRHS 268
           +  Y +      L+   PLF   + KP++       I++      +   T  H  +L+H+
Sbjct: 110 IAKYRI------LSESSPLFVSQQNKPISRQTLDYLIKKYCSLANISDKTKYHFHSLKHT 163

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            A HL  +G D++ +Q  LGH  +S T+IY    +K
Sbjct: 164 TAVHLAESGMDIKELQWWLGHKSVSNTEIYFQFTTK 199


>gi|150003228|ref|YP_001297972.1| transposase [Bacteroides vulgatus ATCC 8482]
 gi|149931652|gb|ABR38350.1| transposase [Bacteroides vulgatus ATCC 8482]
          Length = 411

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 22/153 (14%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDD----------QSTLRIQGKGDKIRIVPLLPSVRKA 209
            ++ C  GL  S+  SL  +N++ D          +  L  + K   I  +PLLP V  A
Sbjct: 250 FVFACFTGLAFSDVASLNKENLVQDNLGDWWIRKGRVKLEHRRKASSISNIPLLP-VPLA 308

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           ILE Y   P  +     LP+    +           Y++++  + G+  + T H  RH+F
Sbjct: 309 ILEKYKEHPTCIKKGCCLPVMCNQK--------MNSYLKEIADFCGIKKNLTTHVARHTF 360

Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T + L+N   L+ +  +LGH     TQ Y  V
Sbjct: 361 GTTVTLANNVPLQDVSVMLGHASTRMTQHYARV 393


>gi|46198973|ref|YP_004640.1| transposase [Thermus thermophilus HB27]
 gi|46196597|gb|AAS81013.1| transposase [Thermus thermophilus HB27]
          Length = 391

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 59/280 (21%), Positives = 117/280 (41%), Gaps = 35/280 (12%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKK 121
           ++++    +RA + +        R++ R L  +K+  +   + ++   +    +R  L K
Sbjct: 120 LQEVKPVHVRAAVDRVAEAGYAPRTVNRVLMRLKALFREALRLELVARNPAEAVRLRLPK 179

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
                RAL   +   L++      S +        + +L L+   GLR  EAL+L  ++I
Sbjct: 180 GEKTARALEPHEVARLLEAAEASRSKDM-------ALLLRLMLETGLRRGEALALQWRDI 232

Query: 182 MDDQSTLRI-----QGKGDKIRIVPLLPSVRKAILEYYD---------------LCPFDL 221
             +   L +     +  G  +   P  P+ ++ +                    L P ++
Sbjct: 233 DLEAGELTVWRSWTKAGGKGVFSEPKTPTAKRKVPLPRGLLLRLKARREELLERLTPEEV 292

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
           +    L L  G+  KP++P  F  Y+R+L    GL      H LRH++AT  LS G  L 
Sbjct: 293 D---GLFLVGGV--KPVDPDAFNHYLRRLAEKAGLG-RVRVHDLRHTWATLALSRGVPLE 346

Query: 282 SIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPS 320
            +   LGH   + T  +Y ++  +    W++++ +  +P+
Sbjct: 347 VVSERLGHASPTITLNVYRHLLEEERRGWVLDLEELLYPA 386


>gi|332884957|gb|EGK05211.1| hypothetical protein HMPREF9456_02975 [Dysgonomonas mossii DSM
           22836]
          Length = 299

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 17/164 (10%)

Query: 158 AILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPS---VRKAILEY 213
           A+L LLY  GLRI EAL++  +N+ ++    L  + K    RIVP+  S   V +  L+Y
Sbjct: 112 ALLRLLYSTGLRIQEALTIKNENVSLEGHYILITKTKNRCERIVPICESMEVVLRQYLQY 171

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-----STTAHTLRHS 268
            D  P       +  LF    G P       ++ R + R   +P+         H  RH+
Sbjct: 172 RDRIPIKNIAASKSHLFVKPDGTPCKAVSVGKWFRMILRSSAIPIFGNRKGPRLHDFRHT 231

Query: 269 FAT----HLLSNGGDLRS----IQSILGHFRLSTTQIYTNVNSK 304
            AT     +  +G D+ +    + + LGH  LS T+ Y  + ++
Sbjct: 232 MATGSLVQMAHDGIDMYAAMPILSACLGHKSLSATEQYVRLTAE 275


>gi|325859512|ref|ZP_08172654.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325482980|gb|EGC85971.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 413

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 97/217 (44%), Gaps = 15/217 (6%)

Query: 95  IKSFLKYLKKRKITTESNI---LNMRNLKK--SNSLPRALNEKQALTLVDNVLLHTSHET 149
           I++F+K+L +RK   + +    +N+  LK+  S  +P    +++   ++ ++        
Sbjct: 178 IRAFMKFLCERKELQDCSYERWINLLRLKRPVSKKIPSVYTQEEVERIIASI-----DRI 232

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRK 208
             I  RN A++ L    GLR  + + +   NI  D + +R+ Q K DK   +PL   V  
Sbjct: 233 STIGKRNYAMILLCARYGLRAIDVVGMRFCNIDWDTNEIRVRQQKTDKEITLPLSEEVGC 292

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS---TTAHTL 265
           A+++Y        N            G  L+ GV    +    R  G+  +   T +H L
Sbjct: 293 ALIDYIKNGRPSANTPYLFIKHSAPYG-ALSSGVMALNVSTYMRRAGIDSTGKRTGSHIL 351

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           RHS A++LL     L  I  ILGH    +T+ Y  V+
Sbjct: 352 RHSLASNLLKANEQLPVISEILGHKSTESTKSYLKVD 388


>gi|300779338|ref|ZP_07089196.1| integrase [Chryseobacterium gleum ATCC 35910]
 gi|300504848|gb|EFK35988.1| integrase [Chryseobacterium gleum ATCC 35910]
          Length = 407

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 17/158 (10%)

Query: 162 LLYGC--GLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD 215
            L+ C  GL   +   LT QNI +    +  I  K  K +    +P+L    K I +Y +
Sbjct: 249 FLFSCFTGLAYIDTQKLTYQNINLGLDGSQWIYTKRQKTKTTSNIPILSQTEKIIKKYKN 308

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
             P  LN    LP+   +  + +N      Y++++    G+    T H  RH+FAT + L
Sbjct: 309 H-PACLNSGKLLPI---LSNQKMNA-----YLKEIADLCGINKELTYHIARHTFATTVTL 359

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGDWMM 311
           SNG  + S+  +LGH  + TTQ Y  + +SK   D M+
Sbjct: 360 SNGVSIESVSKMLGHKSIKTTQHYAKILDSKVSEDMML 397


>gi|168262786|ref|ZP_02684759.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|205348507|gb|EDZ35138.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 345

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 23/143 (16%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I+ +    G R  EA  L    I   + T  I+ KG + R +PL P++            
Sbjct: 201 IVRICLSTGARWGEAEKLKRSQIGAGKVTF-IKTKGKRNRTIPLDPAI------------ 247

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNG 277
                  +LP   G+   P     +  +   L R  + LP     H LRH+FA+H + NG
Sbjct: 248 -----IAELPKKNGVLFSP----CYYAFRSALERAGIELPAGQLTHVLRHTFASHFMMNG 298

Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300
           G++  +Q ILGH  +  T  Y +
Sbjct: 299 GNILVLQKILGHTDIKMTMRYAH 321


>gi|30908736|gb|AAP37600.1| IntI [uncultured bacterium]
          Length = 160

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 34/53 (64%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           R ++Q      +    + HTLRHSFATHLL +G D+R++Q +LGH  + TT I
Sbjct: 105 RGVKQAAHAARIDKHVSCHTLRHSFATHLLEDGYDIRTVQELLGHSSVETTMI 157


>gi|51245456|ref|YP_065340.1| integrase/recombinase [Desulfotalea psychrophila LSv54]
 gi|50876493|emb|CAG36333.1| related to integrase/recombinase [Desulfotalea psychrophila LSv54]
          Length = 357

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 69/156 (44%), Gaps = 23/156 (14%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI-RIVPL-------LPSVRKAI 210
            + LL   G+R SE   L P++I  +  +LRI      I R VPL       L +V    
Sbjct: 195 FVLLLMHTGMRSSEVARLRPEDINFETLSLRIHETKSGIPRSVPLTTKAAEVLQTVSPEA 254

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-----GLPLSTTAHTL 265
             YY L    LN        + IR  P     F    R LR+ +      +P     H L
Sbjct: 255 TGYYFLKENHLNQ-------KDIRLAPAK--AFSSCWRSLRKKMEASGHKIP-HFRPHDL 304

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           RH+ A+HLL  G D+R +  ILGH  L+ T  YT++
Sbjct: 305 RHTAASHLLMAGVDIREVADILGHSTLAMTMRYTHL 340


>gi|330503525|ref|YP_004380394.1| phage integrase family protein [Pseudomonas mendocina NK-01]
 gi|328917811|gb|AEB58642.1| phage integrase family protein [Pseudomonas mendocina NK-01]
          Length = 329

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 19/136 (13%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G R  EA +LTP+ + +   T     K  + R +P+   + KA+  Y+      L  N  
Sbjct: 196 GARWGEAQALTPERVRNGMVTF-ANTKSKRTRSIPIDRELEKALQIYFKR--HGLFTNCM 252

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           L               F R + +    + LP     H LRH+FA+H +  GG++ ++Q I
Sbjct: 253 L--------------TFSRVLDKT--SIKLPAGQATHVLRHTFASHFVMRGGNILTLQKI 296

Query: 287 LGHFRLSTTQIYTNVN 302
           LGH  L+ T  Y +++
Sbjct: 297 LGHTSLAMTMRYAHLS 312


>gi|303237002|ref|ZP_07323575.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302482811|gb|EFL45833.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 421

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 82/185 (44%), Gaps = 30/185 (16%)

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTL 188
           E+ ALT  D   L +    + +D  N   L  L GC  GL  S+   L     MDD  TL
Sbjct: 219 ERNALTSDDLHKLLSYRPHRSVD--NHCRLIFLLGCFTGLAFSDLKKLR----MDDVYTL 272

Query: 189 R--------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                     + K     IVPLLP   + +    D     L       LFR     P N 
Sbjct: 273 DDGRRYISLCRTKTQNRSIVPLLPIAEEILTIVSDGQKEGL-------LFREF---PTN- 321

Query: 241 GVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQI 297
             F R IR +    GLP  T  T+HT RH+FAT + L NG  + ++  +LGH  +STT++
Sbjct: 322 SHFNRKIRDIIIKAGLPPHTEATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEL 381

Query: 298 YTNVN 302
           Y  V+
Sbjct: 382 YAKVS 386


>gi|187928823|ref|YP_001899310.1| integrase family protein [Ralstonia pickettii 12J]
 gi|187725713|gb|ACD26878.1| integrase family protein [Ralstonia pickettii 12J]
          Length = 559

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 121/303 (39%), Gaps = 40/303 (13%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +E +R LS LT +    D   +  FL      +  +   R  S  + R F     T  + 
Sbjct: 250 VERQRPLSSLTTE----DAVAYRAFLRRPMPRERWVGPPRPRSSPDWRPF-----TGALA 300

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            RS+  +LS + +  ++L +++    +    ++   +      AL+  +A T  +  L+ 
Sbjct: 301 ARSVAHALSILGAMFRWLVEQRYVLANPFAGIK--VRGGGRTAALDNSRAFTDGEWKLVR 358

Query: 145 T-SHETKWIDARNSA-------ILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGK 193
           T +   +W     +A       +L   Y  GLR SE +  T  +I  D      L + GK
Sbjct: 359 TIADGLEWSYGWEAAAAQRLRFVLDFAYATGLRPSELVGATLGDIWTDAQGDEWLELTGK 418

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR--GIRGKPLNPG--------VF 243
           G +   V + P  R+A+  Y       ++  +  P  R  G  G     G        V 
Sbjct: 419 GGRSGNVAMPPLARRAVERYLTERGLPISRRLWRPEVRLVGDLGSEPEIGISSTRLWHVV 478

Query: 244 QRYIRQLRRYLGLPLSTTA--------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           +R+ +     +G      A        H +RH+ ATH L +G +L  ++  L H  +STT
Sbjct: 479 KRFFKLAADVIGADHPAAADKLRRASPHWMRHTHATHALGSGAELTIVRDNLRHASVSTT 538

Query: 296 QIY 298
            IY
Sbjct: 539 SIY 541


>gi|330971325|gb|EGH71391.1| Phage integrase [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 286

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 92/202 (45%), Gaps = 22/202 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +W  N++  R     T ++Y+ D   F   +   T ++      R ++ + + A+ ++ +
Sbjct: 31  DWFANIDNPR-----TRRAYQTDLEDFCSSVGLATADEF-----RMVTRSHVLAWRAQLK 80

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN--MRNLKKSNS--LPRALNEKQAL 135
            + +   +++R LS + S   +L +       N ++   R + ++N    P AL + QA 
Sbjct: 81  KRGLAGSTIRRKLSALASLFDHLLESNAVAGGNPVHGIKRPMIETNEGKTP-ALGDHQAK 139

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGK 193
            L+D         T     R  AIL +L   GLR  EA  L   ++++ +    L I GK
Sbjct: 140 ALLD-----APDATTLKGLRGRAILAVLLYHGLRREEAAQLLVNHLVERRGIKHLVIHGK 194

Query: 194 GDKIRIVPLLPSVRKAILEYYD 215
           G K+R +P+ P     +L Y++
Sbjct: 195 GSKVRYLPVHPMAMDRLLSYWE 216


>gi|212693440|ref|ZP_03301568.1| hypothetical protein BACDOR_02956 [Bacteroides dorei DSM 17855]
 gi|212663953|gb|EEB24527.1| hypothetical protein BACDOR_02956 [Bacteroides dorei DSM 17855]
          Length = 297

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 70/159 (44%), Gaps = 35/159 (22%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------GDKIRIVPL---LP 204
           A L+  Y  GLR S+   LTP+N       +RI GK          G +IR+ PL     
Sbjct: 127 AFLFCCY-TGLRYSDFCQLTPENF------IRINGKRWLYFKSVKTGVEIRL-PLHLLFE 178

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           S    IL+ Y             P    +   P N  V  R +R+L    G+    T H 
Sbjct: 179 SRALGILDRY-------------PDSGSLAALPCNSEV-NRQLRKLAGLCGIKKRITYHV 224

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            RH+ AT L+  G  + ++Q +LGH  + TTQIY+ + S
Sbjct: 225 SRHTCATLLIHQGVAITTVQKLLGHTSVKTTQIYSEILS 263


>gi|206972881|ref|ZP_03233803.1| integrase family protein [Bacillus cereus AH1134]
 gi|206731765|gb|EDZ48965.1| integrase family protein [Bacillus cereus AH1134]
          Length = 358

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 126/304 (41%), Gaps = 42/304 (13%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK---------RRTQKIGD 85
           TL +Y  D R F  +L   +E+ I ++ I+ +S+ ++     K         +  Q + +
Sbjct: 43  TLLNYVYDFRVFFNWLL--SEQVIELKLIKDISFADLENLKKKDVENFMRFLKLQQNMQN 100

Query: 86  RSLKRSLSGIKSFLKYL------------------KKRKITTESNILNMRNLKKSNSLPR 127
            S+ R +S +KS  KYL                   K +I  +   LN R  +  + +  
Sbjct: 101 SSVNRKISALKSLFKYLTSLSENEDGECYFYRNVMAKIEIHKDKETLNARAKRMRSKIFH 160

Query: 128 ALNEKQALTLV--DNVLLHTSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIM 182
             ++++ L  V  ++    T H+  +      R+ AIL L  G G+R+SE   L  ++I 
Sbjct: 161 NNDDQEFLNYVKYEHEKSLTKHQLFYFLRDKDRDVAILSLFLGSGIRVSELADLRMEDIN 220

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKP 237
             +  + +  KG+K   V + P     + +Y ++      P     N+ L  ++    +P
Sbjct: 221 LKERLIDVIRKGNKEDSVWITPIALNDLEKYMEIRDNKYAPGKELKNVFLSKYKHT-AQP 279

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+    Q  + +  +  G  +S   H LRH+ A  L     D   +   LGH    T  +
Sbjct: 280 LSVRAIQDIVEKYTKAYGKRMS--PHKLRHTLANKLYMEEKDSLQVMQQLGHTSQDTALL 337

Query: 298 YTNV 301
           YT +
Sbjct: 338 YTQL 341


>gi|330822404|ref|YP_004362625.1| Phage integrase family protein [Burkholderia gladioli BSR3]
 gi|327374241|gb|AEA65595.1| Phage integrase family protein [Burkholderia gladioli BSR3]
          Length = 611

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 99/266 (37%), Gaps = 51/266 (19%)

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
           +T    +     L+   +LP  +  +    L D           W  AR  A++ L+   
Sbjct: 352 VTDPKPVKRATKLQVQRALPIDVWSRVRAELADRAEGFGPQGPDWRLAR--ALVLLMGDA 409

Query: 167 GLRISEALS--------LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           GLRI EA++           ++ +     LR+ GKG+K RIVPL     +A+ E++    
Sbjct: 410 GLRIEEAVTAERGGLQWWPAEDEIPATWMLRLVGKGNKERIVPLTEDAMEALREHWQDRG 469

Query: 219 FDLNL----NIQLPLFRGIRGKP---------------------LNPGVFQRYI-RQLRR 252
            DL+        LPL       P                       P   +R + R + R
Sbjct: 470 LDLDAPGTNADGLPLVAPTVVPPTPASRDKFGVTDTGQVTRVAGYTPRAARRVVTRAIGR 529

Query: 253 YLG-LP----------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            L  LP            T+ H  RH+F T   + G  +  +Q +LGH  L TT IY N 
Sbjct: 530 LLEQLPDLEESARRQLAGTSPHAFRHTFGTQSAAAGMAIEVLQQVLGHGSLQTTTIYVNA 589

Query: 302 NSKNGGDWMMEIYDQTHPSITQKDKK 327
             +     M +   + H  +  +D K
Sbjct: 590 EQQR----MRQESAKYHARLAARDLK 611


>gi|325270579|ref|ZP_08137179.1| integrase [Prevotella multiformis DSM 16608]
 gi|324987155|gb|EGC19138.1| integrase [Prevotella multiformis DSM 16608]
          Length = 407

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 16/148 (10%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            ++ C  GL   +  +LTP NI  +DD+  +  + +   +    LL  + K I+  Y   
Sbjct: 249 FIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPKRIITKYGHK 308

Query: 218 PF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
            + D  L   LP+   +  + +N      Y++++    G+    T H  RH+FAT  LS 
Sbjct: 309 TYRDGKL---LPV---LTNQKINA-----YLKEIADLCGIKKRLTFHLARHTFATMSLSK 357

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           G  + S+  +LGH  + TTQIY  + +K
Sbjct: 358 GVPMESVSKMLGHTNIKTTQIYARITNK 385


>gi|323146135|gb|ADX32374.1| phage integrase [Cronobacter phage ESSI-2]
          Length = 338

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 24/151 (15%)

Query: 153 DARNSAILYLLYGC---GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           ++ +S++L +   C   G R SEA +L    +   + T R   K  K+R VP+       
Sbjct: 189 ESNSSSVLLVAKICLATGARWSEAENLEGAQVTPYRITYR-NTKNKKVRSVPI------- 240

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
                        L  ++P  RG    P     F+R I+  +  + LP     H LRH+F
Sbjct: 241 ----------SEKLYNEIPKKRGRLFTPCRK-TFERVIQ--KAGIDLPEGQCTHVLRHTF 287

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           A+H + NGG++  ++ ILGH  +  T IY +
Sbjct: 288 ASHFMMNGGNILVLKDILGHSDIKMTMIYAH 318


>gi|317497960|ref|ZP_07956267.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894759|gb|EFV16934.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 361

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 92/177 (51%), Gaps = 15/177 (8%)

Query: 152 IDARNSAILY-LLYGCGLRISEALSLTPQNI-MDDQST-----LRIQGKGDKIR--IVP- 201
           +D R   +LY +LY  G RI E L L  +++ + D S       +I+ KG K R   VP 
Sbjct: 179 LDKRRDILLYKMLYLTGARIQEVLDLEIESVPVPDMSQPVGCFQQIKSKG-KTRDLYVPM 237

Query: 202 -LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
            L+  +   I E  +L   D +        R + GK L        ++++++ +G+  + 
Sbjct: 238 SLIQELDDFIFEERNLIDTDHSYIFVSEQARQL-GKQLTYSAAYDKLKKVQKEVGIDFN- 295

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
             H LRH+F ++L+ +G D+  ++ I+GH  LSTTQ YT++++    D + + ++Q+
Sbjct: 296 -FHDLRHTFCSNLVQSGMDVSVVRMIMGHEHLSTTQKYTHLSNPYIEDSLSKYWNQS 351


>gi|226324982|ref|ZP_03800500.1| hypothetical protein COPCOM_02774 [Coprococcus comes ATCC 27758]
 gi|225206330|gb|EEG88684.1| hypothetical protein COPCOM_02774 [Coprococcus comes ATCC 27758]
          Length = 358

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 113/271 (41%), Gaps = 37/271 (13%)

Query: 41  CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLK 100
            D  ++L +L  Y    +  +  +Q++ +E               R L R +S ++SF  
Sbjct: 87  VDIEEYLEYLKVYDTTDVHTKETKQVTNSE---------------RGLFRKMSALRSFYN 131

Query: 101 YLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV----------LLHTSHETK 150
           Y  KR+I  ++  L +   K  +     L+  +   L+D V           L   ++TK
Sbjct: 132 YFFKRQIIQKNPTLFVDMPKLHDKAIIRLDTDEVAKLLDYVESCGSKLTGQALSYYNKTK 191

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
               R+ AI+ LL G G+R+SE + L   ++  + + + +  KG    +V     V KA+
Sbjct: 192 ---ERDIAIITLLLGTGIRVSELVGLDLSDVDFNNNGVMVTRKGGSQMVVYFGEEVEKAL 248

Query: 211 LEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
             Y +     + P       +  LF   + + +     +  +++    +      T H L
Sbjct: 249 RNYLETYRKAVTPL---AGYENALFLSTQKRRIGVQAVENMVKKYASQI-TNKRITPHKL 304

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           R ++ T L    GD+  +  +LGH  ++TT+
Sbjct: 305 RSTYGTALYKETGDIYLVADVLGHKDVNTTK 335


>gi|253573171|ref|ZP_04850542.1| LOW QUALITY PROTEIN: phage integrase [Bacteroides sp. 1_1_6]
 gi|251837240|gb|EES65361.1| LOW QUALITY PROTEIN: phage integrase [Bacteroides sp. 1_1_6]
          Length = 237

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 11/181 (6%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDR 86
           +R +SK T+ SY     QF+ ++       +    ++ L+   +  ++     T+K    
Sbjct: 16  QRNVSKNTIASYRDSFVQFINYMKDINGIPVERLLLKHLTRDNVINYLQWLHNTKKNTSA 75

Query: 87  SLKRSLSGIKSFLKYLKK---RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
           +    L+ I+SF  YL+      +    +IL+++  K   S P  L+ +        +LL
Sbjct: 76  TCNYRLAAIRSFCSYLQYIVIDNMVEWQSILSIKAKKTEISPPNYLSMEGI-----KLLL 130

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVP 201
                T W   R+ A+L L+Y  G R+ E   LT   +  D +  T+R+ GKG K RIVP
Sbjct: 131 AQPDTTSWKGRRHLALLSLMYDTGARVQEIADLTVDCVRIDTTPYTIRLTGKGRKTRIVP 190

Query: 202 L 202
           L
Sbjct: 191 L 191


>gi|254425489|ref|ZP_05039206.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus
           sp. PCC 7335]
 gi|196187912|gb|EDX82877.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus
           sp. PCC 7335]
          Length = 339

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 114/268 (42%), Gaps = 22/268 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +W+     +R +   T ++Y    R F ++  F     ++   +   S  ++       +
Sbjct: 34  DWVDEFLGDREIRPNTKKAYTRQLRGFQVWCEFKHWGDVSEADV---SRYKVHLKNKPTK 90

Query: 80  TQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             KIG    S+ ++++ ++SF K+L  ++  T +  LN+  +  + +  + +       L
Sbjct: 91  AGKIGLSPASVNQAIATLQSFFKWLATKRYITYNPTLNVEKVPAAPTETKDIEVAAVRQL 150

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGD 195
            + +      E   +  R++AI  LL   GLR +E   L   NI D   Q+    + K  
Sbjct: 151 AEGLEYRGQREQ--LSTRDTAIFELLK-HGLRATEVSKL---NIGDYNGQAVQVSEAKWR 204

Query: 196 KIRIVPLLPSVRKAILEYYDLC---PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
               VPL P+ R+A+  Y   C    FD +     PLFR +        +    I ++ +
Sbjct: 205 SDGTVPLAPNARQALDSYLGWCVRKGFDTSSG--EPLFRSLSRNGYGKRLGYWGIYEMVK 262

Query: 253 YLGLPLSTT----AHTLRHSFATHLLSN 276
            LG  + TT     H LRH+F T L+ N
Sbjct: 263 DLGAIVETTENVHPHRLRHTFGTQLVLN 290


>gi|193297474|gb|ACF17809.1| XerCD [Helicobacter pylori]
          Length = 239

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 102/228 (44%), Gaps = 27/228 (11%)

Query: 95  IKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
           ++ F  YL +K+    +  + N+   K   SLPR LN K   + +  +L +    T   +
Sbjct: 8   LRQFFDYLDRKKHYNFDFALKNLAFAKTKESLPRHLNYKDLKSFLKTLLEYKP--TTSFE 65

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDK-----IRIVPLLPSV 206
            RN  +L ++   GLR  E L++  ++I  ++   ++ IQGKG K     I+   L PS+
Sbjct: 66  KRNKCVLLIVILGGLRKCEVLNIELKHIQVEEQNYSILIQGKGRKERKAYIKKSLLEPSL 125

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN--------PGVFQRYIRQLRRYLGLPL 258
              + + Y L  F+        LF+  + K  N        P +F+  + Q++ Y     
Sbjct: 126 NAWLSDDYRLKYFN-----GAYLFKKDKQKSQNSLTLYNFIPLIFK--LAQIKHYK--QY 176

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
            T  H  RHS AT +     DL      LGH  L +T+IY +   ++ 
Sbjct: 177 GTGLHLFRHSCATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHN 224


>gi|325955991|ref|YP_004286601.1| integrase family protein [Lactobacillus acidophilus 30SC]
 gi|325332556|gb|ADZ06464.1| integrase family protein [Lactobacillus acidophilus 30SC]
          Length = 410

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 95/233 (40%), Gaps = 54/233 (23%)

Query: 116 MRNLKKSNSLPRALNEKQALTLVD-----NVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
           +R+LKK   L  A  +++ALT+       N +  +     W          ++ G GLR+
Sbjct: 165 LRDLKKVRGLHGA--KRKALTVAQQNLFLNFVKSSPKYRHWY-----PTFAVMVGSGLRV 217

Query: 171 SEALSLTPQNI--------------MDDQSTLRIQGKG-------DKIRIVPLLPSVRKA 209
            E   L  Q+I                D+S  +  G G          R VP++ SV++A
Sbjct: 218 GELTGLRWQDIDFQNNLINVNHTLIFYDRSKAKYTGFGINTPKTKAGYRSVPMIASVKEA 277

Query: 210 I------LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL----- 258
                  L+  DLC  D+    +  +F    G   + G   + I+++ R           
Sbjct: 278 FEEQKQYLKDNDLCSIDVIDGFKDFIFVNRFGHVQHQGTLNKAIKRIIRDANFDALEKNP 337

Query: 259 ---------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
                    + + HTLRH+F T L+ +G +++ IQ  LGH  + TT  IY +V
Sbjct: 338 AIKEENLLPNFSCHTLRHTFTTRLIESGMNIKVIQEALGHSDIQTTLDIYADV 390


>gi|325953868|ref|YP_004237528.1| integrase [Weeksella virosa DSM 16922]
 gi|323436486|gb|ADX66950.1| integrase family protein [Weeksella virosa DSM 16922]
          Length = 388

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 135/298 (45%), Gaps = 37/298 (12%)

Query: 24  NLEIERGLSKLTLQSYE---CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           N  +E+   +L  +SY    C  R  L  +     +K++IQ+I +     I   I  + +
Sbjct: 89  NFSLEKLKQRLKPKSYSDYLCTNRFILDAVIRLKYDKLSIQSIERYHIKTIMEDI--KIS 146

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +K  + +  ++L  +KS L  L +  I   +    +R LK   S P +    Q  T    
Sbjct: 147 RKWSNHAYNKNLGYLKSILSELVEFDIIKTNPAHGIRLLKYETS-PTSFPTDQEQT---K 202

Query: 141 VLLHTSHETKWIDARNSAILYL---LYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKG 194
           ++ H       + ARN   L     LY  G+R +E L L   ++  D+  + ++   GK 
Sbjct: 203 IIQH-------LYARNFTYLRFVKALYQTGMRPAELLRLKVGDVDLDRDLILLKSDDGKT 255

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPF---DLNLNIQLPLFRGIR---GKPLNPGVFQ---- 244
           +K R+VP+   ++K +L    + P    DL L    P   G +    +  +P  ++    
Sbjct: 256 NKYRLVPIKSDLKKDLLTI--ISPTHGPDLYL-FGTPRKHGGKLDYSEMFSPNKYKIKRD 312

Query: 245 RYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              +  ++Y+   L ++   ++L+H  A  ++ +G D+ +IQ+I GH +  TT+IY N
Sbjct: 313 TVTKYWKKYIKDELGINKNLYSLKHKAANDMMFDGLDIETIQAIFGHSKAKTTEIYAN 370


>gi|237744578|ref|ZP_04575059.1| integrase/recombinase [Fusobacterium sp. 7_1]
 gi|229431807|gb|EEO42019.1| integrase/recombinase [Fusobacterium sp. 7_1]
          Length = 328

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 11/158 (6%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL---RIQGKGDKIRIVPLLPSVRKAIL 211
           RN  ILY L+  G+R  E L+L  ++ +  ++      I+ K  K    P+  S+ K + 
Sbjct: 155 RNITILYTLFYTGMRSKELLTLKFKHYLKRENEYFFKLIETKSGKDVYKPIHKSLVKKLE 214

Query: 212 EY--YDLCPFDLNLNI--QLPLFRG--IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           EY  Y +  + L+L    +  +F    +   PL+       I+ + + +G  +S   H +
Sbjct: 215 EYKEYLMSMYSLDLKDLEEKYIFSTSVLDNSPLSYRSLNAIIQDMGKLIGKDIS--PHNI 272

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           RH+ AT L  +G D+  I+  LGH     T++Y N  S
Sbjct: 273 RHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARS 310


>gi|207724626|ref|YP_002255023.1| integrase/recombinase protein [Ralstonia solanacearum MolK2]
 gi|206589849|emb|CAQ36810.1| integrase/recombinase protein [Ralstonia solanacearum MolK2]
          Length = 553

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 116/303 (38%), Gaps = 42/303 (13%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           IERG  LS LT +    D   +  FL   +  +  +   R  +  + R F     T  + 
Sbjct: 243 IERGRPLSSLTTE----DAIAYRGFLRHPSPHERWVGPARPRASADWRPF-----TDGLS 293

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            RS+  SLS + +  ++L +++    +    ++   +      AL+   A T  +  L+ 
Sbjct: 294 ARSIAYSLSVLGAMFRWLVQQRYVLANPFAGIK--VRGGGRTAALDASHAFTEGEWALVR 351

Query: 145 T-SHETKW-------IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGK 193
           T +   +W          R   +L   Y  GLR SE +      +  D+     L + GK
Sbjct: 352 TIADGLEWSYGWEAPAAQRLRFVLDFAYATGLRASELIGARLSGVETDRQGDHWLSLIGK 411

Query: 194 GDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           G +   V L P  R A+  Y     L       N Q PL   +   P       R    +
Sbjct: 412 GGRAGKVALPPLARTALDRYLVERGLPVTRARWNPQTPLIGALGLDPDGGITGSRLWSVV 471

Query: 251 RRYLGLPLS---------------TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           RR+                      + H +RH+ A+H L+ G +L +++  L H  +STT
Sbjct: 472 RRFFWAAADIIEGDHTVLAEKLRKASPHWMRHTHASHALARGAELTTVRDNLRHASISTT 531

Query: 296 QIY 298
            IY
Sbjct: 532 SIY 534


>gi|47060319|ref|NP_665769.2| ANL28 [Synechococcus elongatus PCC 7942]
 gi|81230370|ref|YP_398752.1| integrase/recombinase [Synechococcus elongatus PCC 7942]
 gi|51338807|sp|Q8KUV2|XERC_SYNE7 RecName: Full=Tyrosine recombinase xerC
 gi|47059650|gb|AAM81156.2|AF441790_27 ANL28 [Synechococcus elongatus PCC 7942]
 gi|81170342|gb|ABB58680.1| integrase/recombinase [Synechococcus elongatus PCC 7942]
          Length = 320

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 137/321 (42%), Gaps = 38/321 (11%)

Query: 9   IVSFELLKERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR-- 64
           +V    +   Q+W  LQ L +E   S  T ++Y+ D R   +F A++ +E    + I   
Sbjct: 7   VVESRAIAPVQDWDVLQML-LEDHRSPNTRRAYDRDLR---LFFAWWLDEDPHPEAIAYW 62

Query: 65  -QLSYTEIRAFI----SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES-------N 112
             L  +E  A +    +  R + + + ++ R L+ +KS +++ ++    T S        
Sbjct: 63  LSLPQSEAIAVVLRWKASMRDRGLAEATINRRLAALKSLVRFSRRLGRCTFSLEDVKGDR 122

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           + + R+   + + P    E          LL   +      AR+ AIL LL+   LR SE
Sbjct: 123 VQSYRD--TTGTTPERFRE----------LLALPNRQTAKGARDYAILRLLWENALRRSE 170

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
           A+    Q++      L I GKG   + +P+  SV + +    D   +      + PLF  
Sbjct: 171 AVQTRVQDLEQGDRRLWILGKGKGRQRLPVSLSV-EMVQALQDWLRWHPKAEPEQPLFTA 229

Query: 233 IR----GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL-SNGGDLRSIQSIL 287
           +     G+ L+       +++    + L    + H +RHS  T  L + GG++R +Q + 
Sbjct: 230 LDRRSYGQQLSDQAVYLLVKRSAEAIKLGKRLSPHRIRHSAITAALDATGGNIRLVQKLS 289

Query: 288 GHFRLSTTQIYTNVNSKNGGD 308
            H RL T Q Y +      G+
Sbjct: 290 RHSRLETLQRYDDARQDFQGE 310


>gi|307546670|ref|YP_003899149.1| type 1 fimbriae regulatory protein FimB [Halomonas elongata DSM
           2581]
 gi|307218694|emb|CBV43964.1| K07357 type 1 fimbriae regulatory protein FimB [Halomonas elongata
           DSM 2581]
          Length = 208

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 85/198 (42%), Gaps = 12/198 (6%)

Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
            TE+  +  R    +    + L   +   L+   + H  H       R++ ++ L +  G
Sbjct: 15  ATETRTVQNRTANDTRRGRQHLTRDEVHRLIRGAMHHQRH-----GRRDALMIRLAFEHG 69

Query: 168 LRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           LR+SE ++L    I      LR+   KG      PL  S  +A+  Y         L   
Sbjct: 70  LRVSELVALRWSAIDLVTHELRVNRIKGSLDGTHPLQGSTVRALKRYQRQDGRSSGL--- 126

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
             +F   RG P++   F+R + +L   + L +    H LRH+   HL+++G DLR +Q  
Sbjct: 127 --VFVNERGTPVSVDGFRRMMHRLSEQV-LGVKWHPHALRHACGVHLINSGVDLRIVQQY 183

Query: 287 LGHFRLSTTQIYTNVNSK 304
           LGH  +  T  YT +  +
Sbjct: 184 LGHANIQNTVAYTALTGR 201


>gi|294647344|ref|ZP_06724937.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294809035|ref|ZP_06767757.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|292637303|gb|EFF55728.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294443760|gb|EFG12505.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 368

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 72/156 (46%), Gaps = 37/156 (23%)

Query: 163 LYGC--GLRISEALSLTPQN--IMDDQS-TLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           L+ C  GLRIS+ L+L  ++  I  DQ   LRI+ +  K +    LP   +A    Y+LC
Sbjct: 225 LFACLTGLRISDILNLQWEDFTIAPDQGYCLRIRTQ--KTQTEATLPISYEA----YELC 278

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY--------LGLPLSTTAHTLRHSF 269
                            G P    VF+   R +  Y         G+  S T H  RHS+
Sbjct: 279 -----------------GTPGTGKVFKDLKRSMINYPLKNWLKKAGITKSITFHCFRHSY 321

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTN-VNSK 304
           A   +S G D+ ++  +L H  +STTQIY + VNSK
Sbjct: 322 AVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSK 357


>gi|270339834|ref|ZP_06006153.2| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270333598|gb|EFA44384.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 381

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 82/185 (44%), Gaps = 30/185 (16%)

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTL 188
           E+ ALT  D   L +    + +D  N   L  L GC  GL  S+   L     MDD  TL
Sbjct: 179 ERNALTSDDLHKLLSYRPHRSVD--NHCRLIFLLGCFTGLAFSDLKKLR----MDDVYTL 232

Query: 189 R--------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                     + K     IVPLLP   + +    D     L       LFR     P N 
Sbjct: 233 DDGRRYISLCRTKTQNRSIVPLLPIAEEILTIVSDGQKEGL-------LFREF---PTN- 281

Query: 241 GVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQI 297
             F R IR +    GLP  T  T+HT RH+FAT + L NG  + ++  +LGH  +STT++
Sbjct: 282 SHFNRKIRDIIIKAGLPPHTEATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEL 341

Query: 298 YTNVN 302
           Y  V+
Sbjct: 342 YAKVS 346


>gi|260911952|ref|ZP_05918516.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon
           472 str. F0295]
 gi|260633899|gb|EEX52025.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon
           472 str. F0295]
          Length = 386

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 8/93 (8%)

Query: 221 LNLNIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           L++  Q     G RG+P         +P      IR+     G+    T H  RH+FA  
Sbjct: 276 LDITGQAAELMGKRGRPEEHVFDEIHSPTCTNTAIREWVLRAGINKKITFHCARHTFAVM 335

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +L  G D+ ++  +LGH  LSTTQIY  V  KN
Sbjct: 336 MLDLGTDIYTVSKLLGHRELSTTQIYAKVLDKN 368


>gi|226356242|ref|YP_002785982.1| integrase [Deinococcus deserti VCD115]
 gi|226318232|gb|ACO46228.1| putative Integrase [Deinococcus deserti VCD115]
          Length = 444

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 2/81 (2%)

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
            L    P+F  + G+P+     ++ +R+     G+PL  + H LRHS  T+L+S G D  
Sbjct: 310 GLKDHAPVFPSVDGRPMRQDSLRQIMRRTCEVAGVPL-LSPHALRHSTGTYLISRGHDPV 368

Query: 282 SIQSILGHFRLSTT-QIYTNV 301
           S+ ++LGH ++STT  IY + 
Sbjct: 369 SVAALLGHAQVSTTLNIYAHA 389


>gi|239620866|ref|ZP_04663897.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239516231|gb|EEQ56098.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 351

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 119/301 (39%), Gaps = 31/301 (10%)

Query: 19  QNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++WL + L   RG S  T+++Y      ++ +L      + +           +  ++  
Sbjct: 21  RDWLHHWLPKVRGSSPKTVEAYRIGLESYVRWLETTEGTQRSHIGFGHFDRARLGRWVEW 80

Query: 78  RRTQK-IGDRSLKRSLSGIKSFLKY--LKKRKITTESNILNMRNLKKSNSLP-RALNEKQ 133
            RT++   DR++   ++ ++ FL +  L+   +T   N      +K     P   L E+ 
Sbjct: 81  MRTERGYSDRTIMLRMTTMRVFLDHAGLEHPALTALGNDAAGIRVKPPARKPVDHLGEEH 140

Query: 134 ALTLVDNVLLHTSHETKWI--DA---RNSAILYLLYGCGLRISEALSLTPQNI-MDDQST 187
           A  L+          T W   DA   RN  +L L+Y    RI E  +LT  ++ MD  + 
Sbjct: 141 AKALL----------TAWGTGDAKSRRNRMLLILMYDTAARIGELAALTIADVGMDKPAR 190

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           + + GK  K R+VPL    R  +  Y +   P     +   PLF   R   + P    R 
Sbjct: 191 VTLTGKRGKSRVVPLGERTRTHLAAYLEEFHPGPSMRDGDRPLFHSTRNGAIQPLSVDRI 250

Query: 247 IRQLRRYLG---------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
              L+             +P     H +R + A  L   G  L  I  +LGH  +STT  
Sbjct: 251 DEILKTAAARARRGTCPSMPERVHCHLIRRTRAMDLYQQGVPLPLIMQLLGHESMSTTSA 310

Query: 298 Y 298
           +
Sbjct: 311 F 311


>gi|60681334|ref|YP_211478.1| putative phage integrase/recombinase [Bacteroides fragilis NCTC
           9343]
 gi|60492768|emb|CAH07542.1| putative phage integrase/recombinase [Bacteroides fragilis NCTC
           9343]
          Length = 305

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            KP  P  ++ Y +Q  + +G+P+    H LRHSFAT  + +  D +++  ILGH  +ST
Sbjct: 222 AKPTEPRTYRNYYKQFMQEIGVPI-LKFHGLRHSFATRCIESKCDYKTVSVILGHSNIST 280

Query: 295 T 295
           T
Sbjct: 281 T 281


>gi|198283395|ref|YP_002219716.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198247916|gb|ACH83509.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
          Length = 331

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 100/232 (43%), Gaps = 34/232 (14%)

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           A I +  T      ++ RSL  +K  L    ++++T E+    ++ L + N       E+
Sbjct: 105 AMIIRDMTGAYAPATINRSLGALKKALTLAWEQELTPENYGARIKRLPEHN-------ER 157

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
                ++ V    SH +   D   +AI   L+  G R  E   L  +++ +   T+R   
Sbjct: 158 HIYLTLEQVNELASHAS---DPVAAAIWIALF-TGCRRGEITKLKAEDVGETTITIRAGN 213

Query: 193 -KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            K  K R VP++  +R  +       PF       +PL       P+N    +   R+ R
Sbjct: 214 TKTLKTRTVPIIGPMRLWL-------PF-------IPL-------PINAEGLKSGFRRAR 252

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              GLP     H LRHS A+ LL++G DL +I  ILGH     T+ Y ++ +
Sbjct: 253 EKAGLP-HLHFHDLRHSCASILLASGADLYTISRILGHSSTKMTERYAHLQT 303


>gi|237745531|ref|ZP_04576011.1| integrase [Oxalobacter formigenes HOxBLS]
 gi|229376882|gb|EEO26973.1| integrase [Oxalobacter formigenes HOxBLS]
          Length = 321

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 23/191 (12%)

Query: 124 SLPRALNEKQA-LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            LP+  NE+Q+ +   + ++L  S      +    A++ + +  G+R+ E +S+  ++ +
Sbjct: 152 ELPKVKNERQSFIDRREMIMLSRSFRGLGAEREARALVRIAFYSGMRLGEMMSIGRKSAL 211

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
            D     I  K  + R VP+ P +  A+ +Y             LP+         +   
Sbjct: 212 LDDGFNLIDTKNGEDRYVPMHPKITTAV-KY-------------LPI-------SYSKKW 250

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            Q  IR+    +GL      H LRHS AT L+++  DL  ++ +LGH  + TTQ Y++V 
Sbjct: 251 MQVLIRRAMDNVGLK-EIRLHDLRHSTATSLINSEKDLYLVKDLLGHKDIRTTQRYSHVL 309

Query: 303 SKNGGDWMMEI 313
            K   D++ +I
Sbjct: 310 KKTLQDFVRKI 320


>gi|157149395|ref|YP_001451419.1| resolvase [Escherichia coli E24377A]
 gi|157076562|gb|ABV16275.1| resolvase [Escherichia coli E24377A]
          Length = 268

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 95/238 (39%), Gaps = 70/238 (29%)

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHT-------SHETKWI-----DARNSAILYLLYG 165
           + ++  SLP A++   AL L    ++H        + E   +     D R   +L  L+ 
Sbjct: 19  SAEQPASLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPDLRRKMLLATLWN 78

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL-------------- 211
            G RI+EAL+LT               +GD   + P  P V+ A L              
Sbjct: 79  TGARINEALALT---------------RGD-FSLTPPYPFVQLAALKQRTEKAARTAGRT 122

Query: 212 ----EYYDLCPFD------------LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
               + Y L P                L I +       G+     +++   R +R ++G
Sbjct: 123 PARQQTYRLVPLSDFWYVSQLQTMVATLKISMERRNKRTGRTEKVRIWEVTDRTVRTWIG 182

Query: 256 LPLSTTA------------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             ++T A            HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 183 EAVATAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240


>gi|257870365|ref|ZP_05650018.1| integrase/recombinase [Enterococcus gallinarum EG2]
 gi|257804529|gb|EEV33351.1| integrase/recombinase [Enterococcus gallinarum EG2]
          Length = 320

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 110/246 (44%), Gaps = 18/246 (7%)

Query: 61  QTIRQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           ++   ++  +IR FI+ R    ++   +L R    I  F K+L   +   +     + N+
Sbjct: 80  KSFSDVTTNDIRLFIANREMIDRVSKGTLARERGCIVRFFKWLCNEEYIAKDPGARVENI 139

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K    +P+    KQ  + ++   L ++      +++ + I+ LL   G R+SE +SL  +
Sbjct: 140 K----VPK--RRKQEFSELEVEKLRSA----TANSKEALIIELLLSTGCRVSELVSLNFR 189

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPL 238
           +   +  ++ + GKG+K R + L    + A+  Y    P     +I  PLF G   GK +
Sbjct: 190 DYDQENDSITVIGKGNKQRTLYLNAKAKMALNHYLKDVP-----HITGPLFFGQTVGKEM 244

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                Q+ +++L     +  +   H  R + AT    +G  +  + + LGH  + TT  Y
Sbjct: 245 TSAGVQKLVKRLGNRAEVA-NVHPHRFRRTAATLARRHGMPIELVMNFLGHESIDTTLKY 303

Query: 299 TNVNSK 304
           + +  +
Sbjct: 304 SMIGDE 309


>gi|218667294|ref|YP_002425983.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218519507|gb|ACK80093.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 331

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 100/232 (43%), Gaps = 34/232 (14%)

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           A I +  T      ++ RSL  +K  L    ++++T E+    ++ L + N       E+
Sbjct: 105 AMIIRDMTGAYAPATINRSLGALKKALTLAWEQELTPENYGARIKRLPEHN-------ER 157

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
                ++ V    SH +   D   +AI   L+  G R  E   L  +++ +   T+R   
Sbjct: 158 HIYLTLEQVNELASHAS---DPVAAAIWIALF-TGCRRGEITKLKAEDVGETTITIRAGN 213

Query: 193 -KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            K  K R VP++  +R  +       PF       +PL       P+N    +   R+ R
Sbjct: 214 TKTLKTRTVPIIGPMRLWL-------PF-------IPL-------PINAEGLKSGFRRAR 252

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              GLP     H LRHS A+ LL++G DL +I  ILGH     T+ Y ++ +
Sbjct: 253 EKAGLP-HLHFHDLRHSCASILLASGADLYTISRILGHSSTKMTERYAHLQT 303


>gi|15829002|ref|NP_326362.1| integrase/recombinase [Mycoplasma pulmonis UAB CTIP]
 gi|14089946|emb|CAC13704.1| INTEGRASE/RECOMBINASE [Mycoplasma pulmonis]
          Length = 274

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 89/210 (42%), Gaps = 36/210 (17%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETK 150
           L+  K FLK+ KK K   +   L    +KK + + R  L  K+ L L         ++++
Sbjct: 84  LASYKGFLKFHKKYKKVEDLLFLK---IKKIDIVYRPVLKNKRLLKLTQ----FEENDSE 136

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
            I  +   ++  LY  G+RI E  +L   N       L + GKG+K R +  L       
Sbjct: 137 RI-KKTKILIRFLYQTGIRIGELNTLILVN-----KKLYVHGKGNKNRQILYLEETFNTF 190

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
             YY    + ++L       + I GK  +P                      H+LR SFA
Sbjct: 191 RNYYPDLRYPMSLKTLRIEIKKILGKEFSP----------------------HSLRRSFA 228

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           TH++ +G D ++I   LGH  ++TT  Y N
Sbjct: 229 THMMQSGADPKTIMLQLGHSSINTTFQYVN 258


>gi|67920907|ref|ZP_00514426.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera
           watsonii WH 8501]
 gi|67857024|gb|EAM52264.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera
           watsonii WH 8501]
          Length = 279

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 113/271 (41%), Gaps = 34/271 (12%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           SKLT Q Y+ + +QF+ F+    EE         +   +I  F+     +     ++K  
Sbjct: 23  SKLTRQHYQSNIKQFIRFIGLSLEE---------VKIEDIHGFVRMLELKGNKPSTIKGK 73

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           LS +KS   +  K    T     N+  L KS   P+ +N++ A   ++N  +      K 
Sbjct: 74  LSTVKSLFSFAYKVGYLTS----NVAVLVKS---PK-VNKRIASMRIENEDIR-----KM 120

Query: 152 IDARNSA----ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
           +D  NS     I+ ++Y  GLR+SE L L        Q+ + I GKG+K R      S+ 
Sbjct: 121 VDGTNSKRDRLIIKMMYFLGLRVSEVLRLKWSYFY--QNKVFISGKGNKER------SLN 172

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                + +L       N         R + L        + +L++ LG+  +   H  +H
Sbjct: 173 LPEELFLELSELKSEFNPTFVFTAYQRDEQLKRQAVNIMLNRLKKRLGIDANIHPHKFKH 232

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             +   L NG D+  +   LGH  +S T+ Y
Sbjct: 233 EHSMTSLDNGCDIHLLSRSLGHSSVSITESY 263


>gi|189440818|ref|YP_001955899.1| Integrase [Bifidobacterium longum DJO10A]
 gi|189429253|gb|ACD99401.1| Integrase [Bifidobacterium longum DJO10A]
          Length = 312

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 18/149 (12%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY 213
           ++ L+   GLR SEAL LTP +      TL +    +       +P     SVRK  L++
Sbjct: 142 LILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWNYKNGGGFVPTKNASSVRKVQLDW 201

Query: 214 YDLCPFDL---NLNIQLPLFRGIRGKPLNP---GVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             +    +   NL    P+F  + GK  N    G+  R+ +Q     G+P+  + H LRH
Sbjct: 202 QLIMQLSVLLKNLPDDKPIF--VNGKVYNSTANGILARHCKQA----GVPV-ISIHGLRH 254

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           + A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 255 THASLLLFAGVSIASVSKRLGHASMNTTQ 283


>gi|188574132|ref|YP_001919300.1| resolvase [Escherichia coli 53638]
 gi|188501307|gb|ACD54442.1| resolvase [Escherichia coli 53638]
          Length = 226

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 40/182 (21%)

Query: 153 DARNSAILYLLYGCGLRISEALSLT-------PQNIMDDQSTL--------RIQGKGDK- 196
           D R   +L  L+  G RI+EAL+LT       P       +TL        R  G+    
Sbjct: 24  DLRRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRAPAG 83

Query: 197 ---IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR 251
               R+VPL  +   + L+        +   +++P+ R  +  G+     +++   R +R
Sbjct: 84  QQTHRLVPLSDTWYVSQLQ-------TMVATLKIPMERRNKRTGRTEKARIWEVTDRTVR 136

Query: 252 RYLG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            ++G              +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT
Sbjct: 137 TWIGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYT 196

Query: 300 NV 301
            V
Sbjct: 197 KV 198


>gi|258649068|ref|ZP_05736537.1| integrase [Prevotella tannerae ATCC 51259]
 gi|260850700|gb|EEX70569.1| integrase [Prevotella tannerae ATCC 51259]
          Length = 438

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 16/148 (10%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            ++ C  GL   +  +LTP NI  +DD+  +  + +   +    LL  + K I+  Y   
Sbjct: 280 FIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPKRIITKYGHK 339

Query: 218 PF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
            + D  L   LP+   +  + +N      Y++++    G+    T H  RH+FAT  LS 
Sbjct: 340 TYRDGKL---LPV---LTNQKINA-----YLKEIADLCGIKKRLTFHLARHTFATMSLSK 388

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           G  + S+  +LGH  + TTQIY  + +K
Sbjct: 389 GVPMESVSKMLGHTNIKTTQIYARITNK 416


>gi|315608474|ref|ZP_07883461.1| integrase [Prevotella buccae ATCC 33574]
 gi|315249800|gb|EFU29802.1| integrase [Prevotella buccae ATCC 33574]
          Length = 438

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 16/148 (10%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            ++ C  GL   +  +LTP NI  +DD+  +  + +   +    LL  + K I+  Y   
Sbjct: 280 FIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPKRIITKYGHK 339

Query: 218 PF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
            + D  L   LP+   +  + +N      Y++++    G+    T H  RH+FAT  LS 
Sbjct: 340 TYRDGKL---LPV---LTNQKINA-----YLKEIADLCGIKKRLTFHLARHTFATMSLSK 388

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           G  + S+  +LGH  + TTQIY  + +K
Sbjct: 389 GVPMESVSKMLGHTNIKTTQIYARITNK 416


>gi|260892325|ref|YP_003238422.1| integrase family protein [Ammonifex degensii KC4]
 gi|260864466|gb|ACX51572.1| integrase family protein [Ammonifex degensii KC4]
          Length = 414

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           GKP+ P  F R    + +  GL      H LRH+FAT LL++G +L+++Q +LGH R+ST
Sbjct: 330 GKPIWPRNFLRAFHSVLKKAGLERHRF-HALRHTFATLLLASGEELKNVQELLGHERIST 388

Query: 295 T-QIYTNV 301
           T  +Y  V
Sbjct: 389 TADVYAEV 396


>gi|260494457|ref|ZP_05814587.1| integrase/recombinase [Fusobacterium sp. 3_1_33]
 gi|260197619|gb|EEW95136.1| integrase/recombinase [Fusobacterium sp. 3_1_33]
          Length = 328

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 11/158 (6%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL---RIQGKGDKIRIVPLLPSVRKAIL 211
           RN  ILY L+  G+R  E L+L  ++ +  ++      I+ K  K    P+  S+ K + 
Sbjct: 155 RNITILYTLFYTGMRSKELLTLQFKHYLKRENEYFFKLIETKSGKDVYKPIHKSLVKKLE 214

Query: 212 EY--YDLCPFDLNLNI--QLPLFRG--IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           EY  Y +  + L+L    +  +F    +   PL+       I+ + + +G  +S   H +
Sbjct: 215 EYKEYLMSMYSLDLKDLEEKYIFSTSVLDNSPLSYRSLNAIIQDMGKLIGKDIS--PHNI 272

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           RH+ AT L  +G D+  I+  LGH     T++Y N  S
Sbjct: 273 RHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARS 310


>gi|288920638|ref|ZP_06414942.1| integrase family protein [Frankia sp. EUN1f]
 gi|288347978|gb|EFC82251.1| integrase family protein [Frankia sp. EUN1f]
          Length = 376

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           R + + R  LGLP     H+LR S+ THL+ +G D   +Q  +GH   STT IYT V+S
Sbjct: 292 RRLTEYRNALGLPAGLDVHSLRRSYVTHLIEDGWDPLFVQQQVGHEHASTTAIYTCVSS 350


>gi|260593040|ref|ZP_05858498.1| integrase [Prevotella veroralis F0319]
 gi|260535012|gb|EEX17629.1| integrase [Prevotella veroralis F0319]
          Length = 438

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 16/148 (10%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            ++ C  GL   +  +LTP NI  +DD+  +  + +   +    LL  + K I+  Y   
Sbjct: 280 FIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPKRIITKYGHK 339

Query: 218 PF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
            + D  L   LP+   +  + +N      Y++++    G+    T H  RH+FAT  LS 
Sbjct: 340 TYRDGKL---LPV---LTNQKINA-----YLKEIADLCGIKKRLTFHLARHTFATMSLSK 388

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           G  + S+  +LGH  + TTQIY  + +K
Sbjct: 389 GVPMESVSKMLGHTNIKTTQIYARITNK 416


>gi|227546691|ref|ZP_03976740.1| phage family integrase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227213008|gb|EEI80887.1| phage family integrase [Bifidobacterium longum subsp. infantis ATCC
           55813]
          Length = 318

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 18/149 (12%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY 213
           ++ L+   GLR SEAL LTP +      TL +    +       +P     SVRK  L++
Sbjct: 151 LILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWNYKNGGGFVPTKNASSVRKVQLDW 210

Query: 214 YDLCPFDL---NLNIQLPLFRGIRGKPLNP---GVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             +    +   NL    P+F  + GK  N    G+  R+ +Q     G+P+  + H LRH
Sbjct: 211 QLIMQLSVLLKNLPDDKPIF--VNGKVYNSTANGILARHCKQA----GVPV-ISIHGLRH 263

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           + A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 264 THASLLLFAGVSIASVSKRLGHASMNTTQ 292


>gi|228937164|ref|ZP_04099861.1| Site-specific recombinase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228822497|gb|EEM68429.1| Site-specific recombinase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 293

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 129/297 (43%), Gaps = 29/297 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY---TEEKITIQTIRQLSYTEIRAFIS 76
           +++ +L  E  L   TL+ Y  D + F+ +         E      I   + T  R    
Sbjct: 4   DFISSLSQEGDLHTKTLKEYTSDLKDFVFWFENVWGKHAEDTLFHPIEVTARTIARYREH 63

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            + T+ +   ++ R ++ IK +  + K++ +   +   +++ +    + P+ +++K+   
Sbjct: 64  MQVTRLLKPSTINRRINSIKRYFDWAKQKGLVQTNYSKSIKFVPTEKTSPKRMSDKEEAA 123

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGK 193
           L+  V        K+   R+ A++  +   GLR  E   +  ++++  +    +    GK
Sbjct: 124 LMYAV-------EKYGTLRDRAMIIFMLHTGLRSMEVCDVQIEDVIMRKRGGYVVVRSGK 176

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNP----GVFQRYIR 248
            +K R VPL  + R A+ E+  L         Q  LF   + GK L       + Q+YIR
Sbjct: 177 RNKQREVPLNSTARCALEEHIRLSEIS-----QSYLFPSSKTGKRLQERAIRHILQKYIR 231

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            L +  G     +AH LRH F  ++++    L  +  I+GH  L+TT IY     ++
Sbjct: 232 -LAKLEGF----SAHDLRHRFG-YVMAERTPLHRLAQIMGHDNLNTTMIYVRATQED 282


>gi|255038961|ref|YP_003089582.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254951717|gb|ACT96417.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 406

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 10/124 (8%)

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K D    +PLLP   + I+E Y+  P   N N  LP+        L+      Y++++  
Sbjct: 288 KTDTPSRIPLLPMALE-IMEKYEDHPQCENENRVLPV--------LSNQKMNSYLKEIAD 338

Query: 253 YLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             G+  + T H  RH+FAT + L+NG  + S+  +LGH  + TTQ Y  +  +   D M 
Sbjct: 339 LCGVKKNITFHLARHTFATTVTLTNGVPIESVSKMLGHRNIKTTQQYAKIVDRKISDDMA 398

Query: 312 EIYD 315
            + D
Sbjct: 399 RLKD 402


>gi|160937770|ref|ZP_02085129.1| hypothetical protein CLOBOL_02662 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439209|gb|EDP16962.1| hypothetical protein CLOBOL_02662 [Clostridium bolteae ATCC
           BAA-613]
          Length = 321

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 16/145 (11%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I+  +   G+R+SE +S   Q++++      I  KG+K+R V +  ++++  L + +   
Sbjct: 170 IIRFITATGVRVSELISFQIQDVINGYKD--IYSKGNKMRRVYIPTALQEDTLRWLE-SE 226

Query: 219 FDLNLNIQLPLF-----RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
           F  N     PLF     RGI       G+  +      RY   P     H+ RH FA + 
Sbjct: 227 FRKNG----PLFLSHLKRGISVS----GIRSQLKTFAYRYHLDPKVVYPHSFRHRFAKNF 278

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIY 298
           + NGGD+  + ++LGH  + TT+IY
Sbjct: 279 IENGGDIAFLSNLLGHTSIETTRIY 303


>gi|163943257|ref|YP_001642487.1| site-specific tyrosine recombinase XerS [Bacillus
           weihenstephanensis KBAB4]
 gi|163865454|gb|ABY46512.1| integrase family protein [Bacillus weihenstephanensis KBAB4]
          Length = 357

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 126/304 (41%), Gaps = 42/304 (13%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK---------RRTQKIGD 85
           TL +Y  D R F  +L   +E+ I  + I+ +S++++     K         +  Q + +
Sbjct: 43  TLLNYVYDFRVFFNWLL--SEQIIEFKPIKDISFSDLENLKKKDVENFMRFLKLQQNMQN 100

Query: 86  RSLKRSLSGIKSFLKYL------------------KKRKITTESNILNMRNLKKSNSLPR 127
            S+ R +S +KS  KYL                   K +I  +   LN R  +  + +  
Sbjct: 101 SSVNRKISALKSLFKYLTSLSENDDGECYFYRNVMAKIEIHKDKETLNARAKRMRSKIFH 160

Query: 128 ALNEKQALTLV--DNVLLHTSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIM 182
             ++++ L  +  ++    T H+  +      R+ AIL L  G G+R+SE   L  ++I 
Sbjct: 161 NDDDQEFLNYIKYEHEKSLTKHQLFYFLRDKDRDVAILSLFLGSGIRVSELADLRMEDIN 220

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKP 237
             +  + +  KG+K   V + P     + +Y ++      P     N+ L  ++    +P
Sbjct: 221 LKERLIDVIRKGNKEDSVWITPIALNDLEKYMEIRDKKYAPGKELKNVFLSKYKHT-AQP 279

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+    Q  + +  +  G  +S   H LRH+ A  L     D   +   LGH    T  +
Sbjct: 280 LSVRAIQDIVEKYTKAFGKRMS--PHKLRHTLANKLYMEEKDSLQVMQQLGHTSQDTALL 337

Query: 298 YTNV 301
           YT +
Sbjct: 338 YTQL 341


>gi|261248380|emb|CBG26217.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
          Length = 340

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/308 (21%), Positives = 118/308 (38%), Gaps = 40/308 (12%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYEC--------DTRQFLIFLAFYTEEKIT 59
           E ++FE  K +  W +  E  R L +L    Y          + R+  +  AF    +  
Sbjct: 34  EALAFEQHKIQHPWQEEKEDRRSLKELIDSWYSAHGITLKDGEKRKLAMHHAFDCMGEPL 93

Query: 60  IQTIRQLSYTEIRA------FISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESN 112
            +      ++  R       +    R +++  R+L   L+  ++    L +  +   E+ 
Sbjct: 94  ARDFDAQMFSRYREKRLKGDYARSNRVKEVSPRTLNLELAYFRAVFNELNRLGEWKGENP 153

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           + NMR  +        L ++Q   L+D    H   +         +++ +    G R SE
Sbjct: 154 LKNMRPFRTEEMEMAWLTKEQIAALLDECKRHEHPDL-------VSVVKICLATGARWSE 206

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
           A  L    +   + T     KG K R VP+         E Y+  P          LF+ 
Sbjct: 207 AEGLKKSQLSKYKITYNYT-KGKKNRTVPISK-------ELYEELP--AKNKEHGSLFQN 256

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
             G       F+  ++  R  + LP     H LRH+FA+H + NGG++  +Q +LGH  +
Sbjct: 257 CYG------AFRSALQ--RTNIELPAGQLTHVLRHTFASHFMMNGGNILVLQRVLGHTDI 308

Query: 293 STTQIYTN 300
             T  Y +
Sbjct: 309 KMTMRYAH 316


>gi|227497529|ref|ZP_03927757.1| site-specific tyrosine recombinase XerC [Actinomyces urogenitalis
           DSM 15434]
 gi|226833010|gb|EEH65393.1| site-specific tyrosine recombinase XerC [Actinomyces urogenitalis
           DSM 15434]
          Length = 149

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 1/125 (0%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ-TIRQLSYTEIRAFIS 76
           RQ+W + L ++RG S+ T+++Y  D    L FL     E   +   +  L   ++RA+++
Sbjct: 13  RQSWERYLRLQRGRSEHTVRAYIGDLDDLLTFLGVGPGEDEGVGPALSSLDLADLRAWLA 72

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                     +L R  S ++SF  +  ++ +        +R  +  N LP  L+++QA  
Sbjct: 73  DLSASGHARATLARRGSALRSFSTWAWRQGLLASDVAARLRTPRADNRLPTVLSQEQATA 132

Query: 137 LVDNV 141
           L+D  
Sbjct: 133 LLDAA 137


>gi|302384970|ref|YP_003820792.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302195598|gb|ADL03169.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 286

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 91/193 (47%), Gaps = 21/193 (10%)

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET-KWIDARNSAILY-----LLYGCGLR 169
           M +LK S+S    +  +Q  T ++NV+    +E  K    R+  +LY      +   G+R
Sbjct: 87  MESLKLSSSKMLMIRIQQK-TFLENVISQADYEYLKKCLIRSGNMLYYFVIRFMAATGVR 145

Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
           +SE + +  +++      + I  K +KIR + +  S+R   L++  L   D    +   +
Sbjct: 146 VSELVQIKVEHV--KCGHMDIYSKDNKIRRIYIPKSLRVDALKW--LNQID---RVSGYV 198

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGL----PLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
           F    G P+ P   +    QL+++  L    P     H+ RH FA + + N GD+  +  
Sbjct: 199 FLNRYGDPITPAGIRG---QLKKFTVLYDLDPNVVYPHSFRHRFAKNFIENCGDISMLSD 255

Query: 286 ILGHFRLSTTQIY 298
           ILGH  + TT+IY
Sbjct: 256 ILGHESIETTRIY 268


>gi|268315977|ref|YP_003289696.1| integrase family protein [Rhodothermus marinus DSM 4252]
 gi|262333511|gb|ACY47308.1| integrase family protein [Rhodothermus marinus DSM 4252]
          Length = 320

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 107/237 (45%), Gaps = 31/237 (13%)

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R +K+   S+   L+ ++ F +YL    +  E+    ++  ++ +S  R++  +     +
Sbjct: 79  REKKLHQVSVSTYLTALRRFCQYLVDIGLLPENPARTVKGNRRPSSHSRSVLTR---VEI 135

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL----RIQGKG 194
           + +L     +T  I  R+ AI++++   GL   E +    +++  DQ+ L    R+QGKG
Sbjct: 136 EQLLAVLDQDTSQIGLRDRAIVHMMLFAGLSEVEIVRADVRDL--DQTLLGWYLRVQGKG 193

Query: 195 D--KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG----------IRGKPLNPGV 242
              K + VPL P V +A+  Y         LN ++PL  G            G+ LN   
Sbjct: 194 HTAKDQQVPLDPPVVEALQAY---------LNTRVPLHPGEPLFVSHGHRSEGQRLNTRS 244

Query: 243 FQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            +  I+Q     G+     T H+L H+ A   L+ G  +  +Q  + H  L TT IY
Sbjct: 245 VRSRIKQHLEAAGITRRGVTPHSLTHTAALIWLNQGMSIEEVQRRMRHGTLETTMIY 301


>gi|313903971|ref|ZP_07837351.1| integrase family protein [Eubacterium cellulosolvens 6]
 gi|313471120|gb|EFR66442.1| integrase family protein [Eubacterium cellulosolvens 6]
          Length = 361

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/224 (21%), Positives = 101/224 (45%), Gaps = 13/224 (5%)

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
           G++ +K+ +S ++ F  Y  K ++  T  + +++M  L +   +   L+  +   L+D V
Sbjct: 116 GEKGIKQKMSALRVFYAYYYKHEMIRTNPTVLVDMPKLHEKEIIR--LDADEVADLLDFV 173

Query: 142 L-----LHTSHETKWIDA--RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
                 L     + W  +  R++AI+ LL G G+R+SE + L  +++    + +++  KG
Sbjct: 174 ESCGEELSPHQRSYWEKSKLRDTAIITLLLGTGIRVSECVGLDLEDVDFRNNGIKVFRKG 233

Query: 195 DKIRIVPLLPSVRKAILEYYDL--CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
               +V     V  A+  Y +            +  LF   + + +N    +  +++   
Sbjct: 234 GNEMMVYFGGEVESALKAYIETERAAITPQQGHEHALFYSAQRRRINVKSVENLVKKYTS 293

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            +      T H LR ++ T L    GD+  +  +LGH  ++TT+
Sbjct: 294 RITSTKKITPHKLRSTYGTALYRETGDIYLVADVLGHKDVNTTK 337


>gi|259503501|ref|ZP_05746403.1| phage integrase [Lactobacillus antri DSM 16041]
 gi|259168579|gb|EEW53074.1| phage integrase [Lactobacillus antri DSM 16041]
          Length = 308

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 70/154 (45%), Gaps = 12/154 (7%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVR 207
           D   +  + +L   GLR +E L +T  +I  D+ T+ I    D        P     SVR
Sbjct: 132 DGTYTNFIDVLLRTGLRFAEGLGVTMNDIDFDKHTISINKTWDYKADSGFQPTKNASSVR 191

Query: 208 KAILEYYDLCPFDLN---LNIQLPLFRG--IRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
              ++ Y L  F  N   +    P+FRG  IR       V ++   +     GLP+  T 
Sbjct: 192 TIEVDDYTLRCFKRNAEGIKNDEPIFRGAGIRYNSTVNDVLKKIQSKYLHLSGLPI--TV 249

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           H LRH+ A+ L++N   ++S+ S LGH    TTQ
Sbjct: 250 HGLRHTHASFLIANRVSIQSVASRLGHADTITTQ 283


>gi|229188200|ref|ZP_04315278.1| Tyrosine recombinase [Bacillus cereus BGSC 6E1]
 gi|228595276|gb|EEK53018.1| Tyrosine recombinase [Bacillus cereus BGSC 6E1]
          Length = 358

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 125/304 (41%), Gaps = 42/304 (13%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK---------RRTQKIGD 85
           TL +Y  D R F  +L   +E+ I  + I+ +S++++     K         +  Q + +
Sbjct: 43  TLLNYVYDFRVFFNWLL--SEQIIEFKPIKDISFSDLENLKKKDVENFMRFLKLQQNMQN 100

Query: 86  RSLKRSLSGIKSFLKYL------------------KKRKITTESNILNMRNLKKSNSLPR 127
            S+ R +S +KS  KYL                   K +I      LN R  +  + +  
Sbjct: 101 SSVNRKISALKSLFKYLTSLSENEDGECYFYRNVMAKIEIHKNKETLNARAKRMRSKIFH 160

Query: 128 ALNEKQALTLV--DNVLLHTSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIM 182
             ++++ L  V  ++    T H+  +      R+ AIL L  G G+R+SE   L  ++I 
Sbjct: 161 NDDDQEFLNYVKYEHEKSLTKHQLFYFLRDKDRDVAILSLFLGSGIRVSELADLRMEDIN 220

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKP 237
             +  + +  KG+K   V + P     + +Y ++      P     N+ L  ++    +P
Sbjct: 221 LKERLIDVIRKGNKEDSVWITPIALNDLEKYMEIRVNKYAPGKELKNVFLSKYKHT-AQP 279

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+    Q  + +  +  G  +S   H LRH+ A  L     D   +   LGH    T  +
Sbjct: 280 LSVRAIQDIVEKYTKAYGKKMS--PHKLRHTLANKLYMEEKDSLQVMQQLGHTSQDTALL 337

Query: 298 YTNV 301
           YT +
Sbjct: 338 YTQL 341


>gi|153808662|ref|ZP_01961330.1| hypothetical protein BACCAC_02961 [Bacteroides caccae ATCC 43185]
 gi|149128488|gb|EDM19706.1| hypothetical protein BACCAC_02961 [Bacteroides caccae ATCC 43185]
          Length = 397

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 47/161 (29%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
            L+ C  GLR S+  +LT  NI++ Q    +           +  SV+  I         
Sbjct: 239 FLFCCYAGLRYSDFTNLTSANIVEFQQETWL-----------IYKSVKTGI--------- 278

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST------------------- 260
                ++LPL+    GK ++  + QRY   L R+  L  ++                   
Sbjct: 279 ----EVRLPLYLLFEGKGIH--ILQRYKDDLNRFFKLKDNSNINKELNILGKLAEIDKRI 332

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + HT RH+ AT L+ +G ++ ++Q +LGH  + TTQ+Y N+
Sbjct: 333 SFHTARHTNATLLIYSGANITTVQKLLGHKSVKTTQVYANI 373


>gi|302346798|ref|YP_003815096.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302150347|gb|ADK96608.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 421

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 82/185 (44%), Gaps = 30/185 (16%)

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTL 188
           E+ ALT  D   L +    + +D  N   L  L GC  GL  S+   L     MDD  TL
Sbjct: 219 ERNALTSDDLHKLLSYRPHRSVD--NHCRLIFLLGCFTGLAFSDLKKLR----MDDVYTL 272

Query: 189 R--------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                     + K     IVPLLP   + +    D     L       LFR     P N 
Sbjct: 273 DDGRRYISLCRTKTQNRSIVPLLPIAEEILTIVSDGQKEGL-------LFREF---PTNS 322

Query: 241 GVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQI 297
             F R IR +    GLP  T  T+HT RH+FAT + L NG  + ++  +LGH  +STT++
Sbjct: 323 H-FNRKIRDIIIKAGLPSHTEATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEL 381

Query: 298 YTNVN 302
           Y  V+
Sbjct: 382 YAKVS 386


>gi|301308505|ref|ZP_07214459.1| integrase [Bacteroides sp. 20_3]
 gi|300833975|gb|EFK64591.1| integrase [Bacteroides sp. 20_3]
          Length = 210

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 22/154 (14%)

Query: 161 YLLYGC--GLRISEALSLTPQNIMDD----------QSTLRIQGKGDKIRIVPLLPSVRK 208
           YL   C  GL  S+  SL  +N++ D          +  L  + K   I  +PLLP V  
Sbjct: 48  YLPLCCFTGLAFSDVASLNKENLVQDNLGDWWIRKGRVKLEHRRKASSISNIPLLP-VPL 106

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           AILE Y   P  +     LP+    +           Y++++  + G+  + T H  RH+
Sbjct: 107 AILEKYKEHPTCIKKGCCLPVMCNQK--------MNSYLKEIADFCGIKKNLTTHVARHT 158

Query: 269 FATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           F T + L+N   L+ +  +LGH     TQ Y  V
Sbjct: 159 FGTTVTLANNVPLQDVSVMLGHASTRMTQHYARV 192


>gi|228911726|ref|ZP_04075500.1| Tyrosine recombinase [Bacillus thuringiensis IBL 200]
 gi|228847955|gb|EEM92835.1| Tyrosine recombinase [Bacillus thuringiensis IBL 200]
          Length = 373

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 126/304 (41%), Gaps = 42/304 (13%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK---------RRTQKIGD 85
           TL +Y  D R F  +L   +E+ I  + I+ +S++++     K         +  Q + +
Sbjct: 58  TLLNYVYDFRVFFNWLL--SEQIIEFKPIKDISFSDLENLKKKDVENFMRFLKLQQNMQN 115

Query: 86  RSLKRSLSGIKSFLKYL------------------KKRKITTESNILNMRNLKKSNSLPR 127
            S+ R +S +KS  KYL                   K +I  +   LN R  +  + +  
Sbjct: 116 SSVNRKISALKSLFKYLTSLSENDEGECYFYRNVMAKIEIHKDKETLNARAKRMRSKIFH 175

Query: 128 ALNEKQALTLV--DNVLLHTSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIM 182
             ++++ L  V  ++    T H+  +      R+ AIL L  G G+R+SE   L  ++I 
Sbjct: 176 NDDDQEFLNYVKYEHEKSLTKHQLFYFLRDKDRDVAILSLFLGSGIRVSELADLRMEDIN 235

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKP 237
             +  + +  KG+K   V + P     + +Y ++      P     N+ L  ++    +P
Sbjct: 236 LKERLIDVIRKGNKEDSVWITPIALNDLEKYMEIRDNKYAPGKELKNVFLSKYKHT-AQP 294

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+    Q  + +  +  G  +S   H LRH+ A  L     D   +   LGH    T  +
Sbjct: 295 LSVRAIQDIVEKYTKAYGKRMS--PHKLRHTLANKLYMEEKDSLQVMQQLGHTSQDTALL 352

Query: 298 YTNV 301
           YT +
Sbjct: 353 YTQL 356


>gi|154488695|ref|ZP_02029544.1| hypothetical protein BIFADO_02002 [Bifidobacterium adolescentis
           L2-32]
 gi|154082832|gb|EDN81877.1| hypothetical protein BIFADO_02002 [Bifidobacterium adolescentis
           L2-32]
          Length = 323

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 107/245 (43%), Gaps = 23/245 (9%)

Query: 66  LSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           ++  +IR ++++  R  ++G  ++      I S   +L++     +S +  ++ ++ S  
Sbjct: 87  ITTDDIRDYLTRYSRDGRVGKTTIDNIRRVISSCFSWLEEEDYIYKSPVRRIKKIRTSRM 146

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           L    +++    L D        ET     R+ A++ LL   G+R+ E + L  ++I  D
Sbjct: 147 LKPVYSDESLEQLRD-----ACKET-----RDLAMIDLLTSTGIRVGELVQLNRRDIDFD 196

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN----P 240
                + GKGDK R V      +  +L Y      +  ++ +  LF  +  +P       
Sbjct: 197 ARECVVHGKGDKERRVYFDARAKTHLLVY-----LEQRMDDEPALFVSLH-RPFKRLEIS 250

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           GV  R +R+L    G+      H  R + AT  +  G  +  +Q +LGH ++ TT  Y  
Sbjct: 251 GVEAR-LRKLGDDSGVK-HVHPHKFRRTLATKAIDKGMPIEQVQVLLGHSKIDTTLCYAQ 308

Query: 301 VNSKN 305
           V+  N
Sbjct: 309 VDQDN 313


>gi|284931854|gb|ADC31721.1| truncated tyrosine recombinase IntI2 [Escherichia coli]
 gi|284931857|gb|ADC31723.1| tyrosine recombinase IntI2 [Escherichia coli]
 gi|284931868|gb|ADC31728.1| truncated tyrosine recombinase IntI2 [Escherichia coli]
          Length = 58

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/37 (62%), Positives = 29/37 (78%)

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 1   FRHSFATHLLQAGRDIRTVQELLGHNDVKTTQIYTHV 37


>gi|296169729|ref|ZP_06851346.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895626|gb|EFG75323.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 325

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 28/148 (18%)

Query: 166 CGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
            GLR +E   +   +++ D    +L + GKG K R+ PL                 +  L
Sbjct: 141 AGLRRAEVALVHSDDLIRDLHGWSLIVHGKGGKQRVAPL-----------------NDGL 183

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTAHTLRHSFATHLLSNG 277
             +L  F    G  L PG    +I     ++G      +P   + H LRH FAT   S  
Sbjct: 184 TAELRAFCTSHGY-LFPGQVDGHISA--EWVGTVISRLMPPGWSMHKLRHRFATLGYSGT 240

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           G+LR++Q  LGH  ++TTQ YT V+++ 
Sbjct: 241 GNLRAVQEALGHASVATTQRYTAVSTRE 268


>gi|291514097|emb|CBK63307.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 414

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 74/158 (46%), Gaps = 27/158 (17%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDD------QSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            L+ C  GL   +  +LTPQ+I  D       +T R  G    +RI  +  ++   +L+Y
Sbjct: 249 FLFSCFTGLSYIDLCTLTPQHIQQDGKQLWISTTRRKTGSAVNVRIFAIPYTI---LLKY 305

Query: 214 YDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
               P   N  I +LP          + G     + ++    G+P   T H+ RH+FAT 
Sbjct: 306 K---PMQRNARIFRLP----------SNGWCNICLERIMSLAGIPRHITFHSARHTFATT 352

Query: 273 L-LSNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGD 308
           + LS G  + +I  +LGH  + TTQIY  + +SK  GD
Sbjct: 353 ITLSQGMAIETISKLLGHKNIRTTQIYATITHSKLDGD 390


>gi|83749979|ref|ZP_00946929.1| Hypothetical Protein RRSL_00056 [Ralstonia solanacearum UW551]
 gi|83723354|gb|EAP70582.1| Hypothetical Protein RRSL_00056 [Ralstonia solanacearum UW551]
          Length = 566

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 116/303 (38%), Gaps = 42/303 (13%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           IERG  LS LT +    D   +  FL   +  +  +   R  +  + R F     T  + 
Sbjct: 256 IERGRPLSSLTTE----DAIAYRGFLRHPSPHERWVGPARPRASADWRPF-----TDGLS 306

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            RS+  SLS + +  ++L +++    +    ++   +      AL+   A T  +  L+ 
Sbjct: 307 ARSIAYSLSVLGAMFRWLVQQRYVLANPFAGIK--VRGGGRTAALDASHAFTEGEWALVR 364

Query: 145 T-SHETKW-------IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGK 193
           T +   +W          R   +L   Y  GLR SE +      +  D+     L + GK
Sbjct: 365 TIADGLEWSYGWEAPAAQRLRFVLDFAYATGLRASELIGARLSGVETDRQGDHWLSLIGK 424

Query: 194 GDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           G +   V L P  R A+  Y     L       N Q PL   +   P       R    +
Sbjct: 425 GGRAGKVALPPLARTALDRYLVERGLPVTRARWNPQTPLIGALGLDPDGGITGSRLWSVV 484

Query: 251 RRYLGLPLS---------------TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           RR+                      + H +RH+ A+H L+ G +L +++  L H  +STT
Sbjct: 485 RRFFWAAADIIEGDHTVLAEKLRKASPHWMRHTHASHALARGAELTTVRDNLRHASISTT 544

Query: 296 QIY 298
            IY
Sbjct: 545 SIY 547


>gi|325000085|ref|ZP_08121197.1| integrase family protein [Pseudonocardia sp. P1]
          Length = 378

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 103/230 (44%), Gaps = 40/230 (17%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKK--RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + DRS   + + +++ +K+++   R    +  I   R+     +LPR   ++     VD 
Sbjct: 118 VTDRSAAMAPTTLRALVKFVRSVFRAAVDDHRI--ARSPFVRITLPRHEPDRIVPLTVDQ 175

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK---I 197
           V   T  E   + AR+ A++    G GLRI E L+L   ++   + T R++ + D+    
Sbjct: 176 V--RTLAEA--VPARHRALVLAQAGLGLRIGELLALRVVDVDFLRRTARVEHQIDRRTRD 231

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-------------LFRGIRGKPL-----N 239
           R+ P  P  R+ I       P    + + L              +F    G+PL     +
Sbjct: 232 RVPPKTPRSRRTI-------PLPNVVGVALAEHLAEYGPAADGLIFHTAEGRPLLQEYVS 284

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
             VF R +R+      LP STT+H LRH +A+ LL+ G  + ++   LGH
Sbjct: 285 RNVFGRAVRRT----DLPASTTSHDLRHHYASILLAAGESVLAVAERLGH 330


>gi|297527277|ref|YP_003669301.1| integrase family protein [Staphylothermus hellenicus DSM 12710]
 gi|297256193|gb|ADI32402.1| integrase family protein [Staphylothermus hellenicus DSM 12710]
          Length = 333

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 15/166 (9%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAIL 211
           D  +  IL++L   GLR  E L +   +I  +  T+ +   K DK R V +     + I 
Sbjct: 141 DPLDKLILFILLDTGLRSKELLGIRVSDIDFENRTITVTSTKYDKERKVLVTSRTIELIR 200

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-STTAHTLRHSFA 270
            + +L     NL  +  L       PL      + I++L +  G+P+     H LRH+FA
Sbjct: 201 SWIELK----NLGKEDRLI------PLTYSGLYKRIKRLGKRAGIPVWKIRPHILRHTFA 250

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGDWMMEI 313
           T  L  G  L  +Q +LGH  + TTQ+Y +V   + ++  D +ME+
Sbjct: 251 TQALKKGLSLPYLQRLLGHSDIKTTQVYLHVTVDDIRSEYDKVMEV 296


>gi|160873093|ref|YP_001557098.1| integrase family protein [Shewanella baltica OS195]
 gi|160858615|gb|ABX51838.1| integrase family protein [Shewanella baltica OS195]
          Length = 210

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 30/174 (17%)

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQG------------KGDKIRIVPLLPSVRK 208
           ++L+ CG R SEAL++TP+ +M + ST+ IQ             K  + R VP+ P    
Sbjct: 46  HVLHYCGCRPSEALAITPRRVMINDSTIVIQSLKKHKTDQQGRLKQAQYRSVPVPP---- 101

Query: 209 AILEYYDLCPFDL------NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            ++E+ DL  F L      +L I  PL+   R     P  ++   R + R   +    T 
Sbjct: 102 PLIEHLDLV-FGLRSQLRRDLVIDAPLWLMSR-----PTAYRLVKRVMDRAGIVGPQATG 155

Query: 263 HTLRHSFATHLLSNGG--DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
             LRH F   L++      L  I  ++GH    TT+IY  V S+     +M  +
Sbjct: 156 KGLRHGFGVALVTANPPVPLHVISQLMGHSDSKTTEIYLQVLSEERHSLVMNAW 209


>gi|23466323|ref|NP_696926.1| phage family integrase [Bifidobacterium longum NCC2705]
 gi|317481754|ref|ZP_07940784.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689710|ref|YP_004209444.1| phage integrase [Bifidobacterium longum subsp. infantis 157F]
 gi|23327078|gb|AAN25562.1| phage family integrase [Bifidobacterium longum NCC2705]
 gi|316916802|gb|EFV38194.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320461046|dbj|BAJ71666.1| phage integrase [Bifidobacterium longum subsp. infantis 157F]
          Length = 309

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 18/149 (12%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY 213
           ++ L+   GLR SEAL LTP +      TL +    +       +P     SVRK  L++
Sbjct: 142 LILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWNYKNGGGFVPTKNASSVRKVQLDW 201

Query: 214 YDLCPFDL---NLNIQLPLFRGIRGKPLNP---GVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             +    +   NL    P+F  + GK  N    G+  R+ +Q     G+P+  + H LRH
Sbjct: 202 QLIMQLSVLLKNLPDDKPIF--VNGKVYNSTANGILARHCKQA----GVPV-ISIHGLRH 254

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           + A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 255 THASLLLFAGVSIASVSKRLGHASMNTTQ 283


>gi|237714827|ref|ZP_04545308.1| site-specific recombinase [Bacteroides sp. D1]
 gi|262406900|ref|ZP_06083449.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646188|ref|ZP_06723843.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294810609|ref|ZP_06769260.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229445152|gb|EEO50943.1| site-specific recombinase [Bacteroides sp. D1]
 gi|262355603|gb|EEZ04694.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638483|gb|EFF56846.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294442202|gb|EFG11018.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 397

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 19/144 (13%)

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           CGLR+S+   L   ++      +RI+ K  K +  PL   +    L++            
Sbjct: 254 CGLRVSDIRKLKWNDLQKSGERIRIEIKMQKTK-EPLYLPISDEALKW------------ 300

Query: 226 QLPLFRGIRGKPL-----NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
            LP     +G  L     + G   + +++  +  G+    + H  RH+ AT +L+ G DL
Sbjct: 301 -LPQQNEAKGDDLIFPLTHEGTINKILQKWAKDAGIIKHISFHVARHTHATMMLTLGADL 359

Query: 281 RSIQSILGHFRLSTTQIYTNVNSK 304
            ++  +LGH  ++TTQIY  +  K
Sbjct: 360 YTVSKLLGHKNIATTQIYAKIVDK 383


>gi|229082797|ref|ZP_04215228.1| Tyrosine recombinase [Bacillus cereus Rock4-2]
 gi|228700494|gb|EEL53049.1| Tyrosine recombinase [Bacillus cereus Rock4-2]
          Length = 373

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 127/304 (41%), Gaps = 42/304 (13%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK---------RRTQKIGD 85
           TL +Y  D R F  +L   +E+ I ++ I+ +S++++     K         +  Q + +
Sbjct: 58  TLLNYVYDFRVFFNWLL--SEQIIELKPIKDISFSDLENLKKKDVENFIRFLKLQQNMQN 115

Query: 86  RSLKRSLSGIKSFLKYL------------------KKRKITTESNILNMRNLKKSNSLPR 127
            S+ R +S +KS  KYL                   K +I  +   LN R  +  + +  
Sbjct: 116 SSVNRKISALKSLFKYLTSLSENEDGECYFYRNVMAKIEIHKDKETLNARAKRMRSKIFH 175

Query: 128 ALNEKQALTLV--DNVLLHTSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIM 182
             ++++ L  V  ++    T H+  +      R+ AIL L  G G+R+SE   L  ++I 
Sbjct: 176 NDDDQEFLNYVKYEHEKSLTKHQLFYFLRDKDRDVAILSLFLGSGIRVSELADLRIEDIN 235

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKP 237
             +  + +  KG+K   V + P     + +Y ++      P     N+ L  ++    +P
Sbjct: 236 LKERLIDVIRKGNKEDSVWITPIALNDLEKYIEIRDNKYAPGKELKNVFLSKYKHT-AQP 294

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+    Q  + +  +  G  +S   H LRH+ A  L     D   +   LGH    T  +
Sbjct: 295 LSVRAIQDIVEKYTKAYGKRMS--PHKLRHTLANKLYMEEKDSLQVMQQLGHTSQDTALL 352

Query: 298 YTNV 301
           YT +
Sbjct: 353 YTQL 356


>gi|15614912|ref|NP_243215.1| hypothetical protein BH2349 [Bacillus halodurans C-125]
 gi|10174969|dbj|BAB06068.1| BH2349 [Bacillus halodurans C-125]
          Length = 223

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 96/203 (47%), Gaps = 19/203 (9%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ++LKE +   Q     R  +K T+ +   +  Q   FL    E K  I  +  + + +++
Sbjct: 5   DVLKEYEYHCQ----ARNFTKKTMTNKRQEYNQLKQFL----ETKRGITELESIYHQDLK 56

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           ++I  ++   +  +S+      IK+F  +    +   E+ +  +       +LP+   E 
Sbjct: 57  SYIRSKQMSGLKPQSIHAIAKQIKAFFNWCVSEEYLKENPMDKV-------ALPKVPKEV 109

Query: 133 QALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
                 D V  ++ +     +++ RN AI+ ++  CGLR  E   L   N+ D  + +++
Sbjct: 110 LTGLTTDEVVKMMDSFKGDSYLEIRNKAIIAMMSDCGLRAMEIAGLKECNVRD--TDIKV 167

Query: 191 QGKGDKIRIVPLLPSVRKAILEY 213
            GKG+K R+V + P+++K +L+Y
Sbjct: 168 FGKGNKERMVFISPALKKILLKY 190


>gi|319954949|ref|YP_004166216.1| integrase family protein [Cellulophaga algicola DSM 14237]
 gi|319423609|gb|ADV50718.1| integrase family protein [Cellulophaga algicola DSM 14237]
          Length = 212

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 79/172 (45%), Gaps = 24/172 (13%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV- 200
           LL  S +T++   RN  +L + Y  GLR+SEA+++   ++   +S + I      + +  
Sbjct: 49  LLAASKKTRY-PKRNYLLLLMTYRHGLRVSEAIAIKKSDVNIKESRIWINRLKSGLSVEH 107

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+     +AI  Y +      +    LP LF   RG PL         RQ   Y+   ++
Sbjct: 108 PISGDELRAIKRYLN------SREDNLPWLFVNERGLPLT--------RQAINYIVNVIA 153

Query: 260 TTA-------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           T A       HTLRHS   +L + G DLR IQ  LGH     T  YT V SK
Sbjct: 154 TAAKLENVHPHTLRHSCGFYLANKGYDLRLIQDYLGHRDPKHTAHYTRVVSK 205


>gi|221195298|ref|ZP_03568354.1| DNA integration/recombination/invertion protein [Atopobium rimae
           ATCC 49626]
 gi|221185201|gb|EEE17592.1| DNA integration/recombination/invertion protein [Atopobium rimae
           ATCC 49626]
          Length = 401

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 70/160 (43%), Gaps = 20/160 (12%)

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----------------KGDKIRIVPLLP 204
           +L    G+R  E  +L  Q++   Q  + + G                KG + R V +  
Sbjct: 216 WLALKTGMRCGEVCALRRQDVNHMQRYIHVSGTVIEEPRRQPYRRDVTKGRRHRNVSITD 275

Query: 205 SVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           +    I  Y  L    + + I+   PL   + G  + P         LRR L LP   T 
Sbjct: 276 ADLALIDRYSQLQGKRMGVAIKGATPLV-SVTGAFMRPTKVSSAFTALRRSLELPAGITF 334

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           HTLRH+ A+  L+NG DL+++   LGH   +TT +IY +V
Sbjct: 335 HTLRHTHASWCLANGVDLKTLSERLGHADEATTLRIYAHV 374


>gi|303235823|ref|ZP_07322427.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483965|gb|EFL46956.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 245

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 94/209 (44%), Gaps = 35/209 (16%)

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMD 183
           PR++ +++   ++D        E +W + R    L++ + C  GL IS+  +L  +NI+ 
Sbjct: 61  PRSITQEELEHIID-------LEIEWENYRIVRDLFV-FSCFTGLAISDVRNLREENIVT 112

Query: 184 DQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-- 238
           ++  L I+G+  K +    V +LP     +  Y                 RGIR   +  
Sbjct: 113 EEGKLCIKGRRMKTKTPYRVQVLPPALTIMNRY-----------------RGIRAGFVFD 155

Query: 239 --NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTT 295
                +    +  ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TT
Sbjct: 156 VPTTDIILNGMHHIQRNIGMETPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTT 215

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           Q+Y  V+S+     M  I  +   + T K
Sbjct: 216 QVYAAVSSERIHRDMQAIQQRIQDTFTLK 244


>gi|296162872|ref|ZP_06845653.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886909|gb|EFG66746.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 337

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 122/285 (42%), Gaps = 27/285 (9%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEE---KITIQTIRQLSYTEIRAFIS---KRRTQKIGDRS 87
           L+ Q+  C     L+FL F   +   + T   +  +    I AF+    + R   +  R+
Sbjct: 30  LSPQTVACYRDALLLFLHFACRQLGKEPTTMRLADIQPNLILAFLDYLEQDRKNSVRSRN 89

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL---TLVDNVLLH 144
           L+  L+ +++FLK+  +R      ++ ++  ++++ ++P    E+  L   T  + V + 
Sbjct: 90  LR--LTALRAFLKFAGRR------DVASLHCVERALAVPMKRFERPMLNYLTRAEMVAVL 141

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQGKGDKIRIVPLL 203
                 W   R+  +L +LY  G R+SE + +   + ++D  + + ++GKG K+R +PL 
Sbjct: 142 GQPGESWSSRRDHLLLTMLYNTGARVSEIIGVRVVDVVLDGAACVHLRGKGRKLRSIPLW 201

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYLG-----LP 257
            +    + E       +  +  +  L     G+ ++   V QR    + R        L 
Sbjct: 202 DAT---VAEIRSWLRSNSAMRGEAALLPNRDGQAMSRSNVAQRLDLAVSRASVEQPSLLK 258

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              + H LRH+ A HLL        I   LGH    TT  Y   +
Sbjct: 259 KRISPHILRHTTAMHLLQADVPFNVIALWLGHESPMTTHRYVEAD 303


>gi|154423273|gb|ABS81541.1| putative phage integrase [Alcaligenes sp. NyZ215]
          Length = 443

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 121/303 (39%), Gaps = 42/303 (13%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +ERG  LS LT +    D   +  FL   T  +  +   R  S  + R F      + + 
Sbjct: 133 VERGRALSSLTTE----DAIAYRAFLRRPTPRERWVGPPRARSAPDWRPF-----ARALS 183

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            RS   +LS + +  ++L +++    +    ++   ++     AL+  +  T  + +L+ 
Sbjct: 184 ARSTAYALSVLGALFRWLIEQRYVLANPFAGIKVRGRTRVA--ALDTSRGFTEGEWLLVR 241

Query: 145 T-SHETKW---IDARNSA----ILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGK 193
           T +   +W    DA  +     IL   Y  GLR SE +     +I  D+     L + GK
Sbjct: 242 TIADGLEWSYGWDASAAQRLRFILDFAYATGLRASELVGAALGDIHVDEHHDHWLHLIGK 301

Query: 194 GDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           G +   V L P  R A+ +Y     L       + + PL   +           R    +
Sbjct: 302 GSRPGKVALPPLARSALDQYLVQRGLPVTPARWDPKTPLLASLEQDSAASITGTRLWHVM 361

Query: 251 RRYLGLPLSTTA---------------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           RR+ G      A               H +RH+ ATH L+ G +L S++  L H  ++TT
Sbjct: 362 RRFFGQAADVIAPDNPTVAEKLRRASPHWMRHTHATHALARGAELTSVRDNLRHASVATT 421

Query: 296 QIY 298
            IY
Sbjct: 422 SIY 424


>gi|67925842|ref|ZP_00519134.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera
           watsonii WH 8501]
 gi|67852313|gb|EAM47780.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera
           watsonii WH 8501]
          Length = 290

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 114/273 (41%), Gaps = 38/273 (13%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           SKLT Q Y+ + +QF+ F+    EE         +   +I  F+     +     ++K  
Sbjct: 23  SKLTRQHYQSNIKQFIRFIGLSLEE---------VKIEDINGFVRMLELKGNKPSTIKGK 73

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET-- 149
           LS +KS   +  K    T     N+  L KS   P+ +N++ A   ++       HE   
Sbjct: 74  LSTVKSLFSFAYKVGYLTS----NVTVLVKS---PK-VNKRTASMRIE-------HEDIR 118

Query: 150 KWIDARNSA----ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           K +D  NS     I+ +++  GLR+SE L L   +    Q+ + I GKG+K R      S
Sbjct: 119 KMVDGTNSKRDRLIIKMMFFLGLRVSEVLRLKWSDFY--QNKVFISGKGNKER------S 170

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           +      + +L       N         + + L        + +L++ LG+  +   H  
Sbjct: 171 LNLPEELFLELSELKSEFNPTFVFTAYQKDEQLKRQAVNIMLNRLKKRLGIDANIHPHKF 230

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           RH  +   L NG D+  +   LGH  +S T+ Y
Sbjct: 231 RHEHSMTSLDNGCDIHLLSRSLGHGSVSITESY 263


>gi|302669260|ref|YP_003832410.1| tyrosine recombinase XerC3 [Butyrivibrio proteoclasticus B316]
 gi|302396924|gb|ADL35828.1| tyrosine recombinase XerC3 [Butyrivibrio proteoclasticus B316]
          Length = 361

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 125/286 (43%), Gaps = 40/286 (13%)

Query: 45  QFLIFLAFYTEEK-----------ITIQTIRQLSYTEIRAF----ISKRRTQKIG----- 84
           Q ++F   Y +EK           I  + I  L   +I  F     S  +  K G     
Sbjct: 51  QDILFFYKYLKEKNPICRNLELRNIPFEVIENLGPQDINEFQNYVASGHKPDKTGNIKPA 110

Query: 85  -DRSLKRSLSGIKSFLKYLKKRKI----TTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +R++ R ++ ++++ +Y+ K        T   ++  ++ +K +   R L+ +Q   L+D
Sbjct: 111 NERAIARKMAAVRNYFQYMVKYDYLNADPTIKAVVKKKDPEKKDI--RRLDSEQVQKLID 168

Query: 140 NV------LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           +V        H+   ++    R+  I+ LL   G+R+SE   L   ++  +++++ I  K
Sbjct: 169 SVENVNSASYHSRVMSEITAKRDLTIVTLLLNTGIRVSECAGLDLADVNFNENSITIVRK 228

Query: 194 G---DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQ 249
           G   D + I  L   +R  + +Y       L  N + P LF  ++ + ++    Q  I +
Sbjct: 229 GGYEDHLYINEL---IRNTLKDYIKNERPTLLENAEDPALFISLKHRRMSIRSIQHMIEK 285

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             +  GL    T H LR ++ T L +   D+  +  +LGH  ++TT
Sbjct: 286 YGKNTGLSQKLTPHKLRRTYGTALYNKTSDIYMVADVLGHKDVNTT 331


>gi|218260320|ref|ZP_03475692.1| hypothetical protein PRABACTJOHN_01354 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224605|gb|EEC97255.1| hypothetical protein PRABACTJOHN_01354 [Parabacteroides johnsonii
           DSM 18315]
          Length = 397

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 21/172 (12%)

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D + L    E K+   + + +   L  CGLR+S+   L   ++      +RI+ K  K 
Sbjct: 228 IDELKLLIGTECKYEIMKQAFLFSCL--CGLRVSDIRKLKWNDLQKSGERIRIEIKMQKT 285

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-----NPGVFQRYIRQLRR 252
           +  PL   +    L++             LP     +G  L     + G   + +++  +
Sbjct: 286 K-EPLYLPISDEALKW-------------LPQQNEAKGDDLIFPLTHEGTINKILQKWAK 331

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             G+    + H  RH+ AT +L+ G DL ++  +LGH  ++TTQIY  +  K
Sbjct: 332 DAGVIKHISFHVARHTHATMMLTLGADLYTVSKLLGHKNIATTQIYAKIVDK 383


>gi|210630774|ref|ZP_03296598.1| hypothetical protein COLSTE_00483 [Collinsella stercoris DSM 13279]
 gi|210160370|gb|EEA91341.1| hypothetical protein COLSTE_00483 [Collinsella stercoris DSM 13279]
          Length = 308

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 18/149 (12%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY 213
           ++ ++   GLR SEAL LTP++      TL +    D       +P     SVRK  L++
Sbjct: 141 LILIVAKTGLRFSEALGLTPEDFDFAHQTLSVNKTWDYKNGGGFVPTKNASSVRKVQLDW 200

Query: 214 ---YDLCPFDLNLNIQLPLFRGIRGKPLNP---GVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                L     +L    P+F  ++GK  N    GV  R+ + +    G P+  + H LRH
Sbjct: 201 QLIMQLSGLLKDLPPTEPIF--VKGKVYNSTANGVLARHCKNV----GAPV-ISVHGLRH 253

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           + A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 254 THASLLLFAGVSIASVSRRLGHASMTTTQ 282


>gi|260174248|ref|ZP_05760660.1| integrase protein [Bacteroides sp. D2]
 gi|315922519|ref|ZP_07918759.1| integrase [Bacteroides sp. D2]
 gi|313696394|gb|EFS33229.1| integrase [Bacteroides sp. D2]
          Length = 390

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 46/163 (28%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           A L+  Y  GLR S+  +LT  NI++      I           +  SV+          
Sbjct: 238 AFLFCCYA-GLRYSDFTNLTSANIVEFHQETWI-----------IYKSVKTG-------- 277

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST----------------- 260
                + ++LPL+    GK +   + QRY   L  +  L  ++                 
Sbjct: 278 -----MEVRLPLYLLFEGKGIQ--ILQRYKDDLNSFFKLKDNSNINKELNILAGLAKIDK 330

Query: 261 --TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             + HT RH+ AT LL NG ++ ++Q +LGH  + TTQ+Y N+
Sbjct: 331 RVSFHTARHTNATLLLYNGANITTVQKLLGHKSVKTTQVYANI 373


>gi|257453044|ref|ZP_05618343.1| phage integrase family site specific recombinase [Fusobacterium sp.
           3_1_5R]
 gi|317059582|ref|ZP_07924067.1| phage integrase [Fusobacterium sp. 3_1_5R]
 gi|313685258|gb|EFS22093.1| phage integrase [Fusobacterium sp. 3_1_5R]
          Length = 371

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 2/74 (2%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +F GI G+PL      R +  + + L +P   + H++RHSFAT L      ++++Q ++G
Sbjct: 284 IFPGIDGQPLEVKKLPRRLAAICKKLNIP-HRSFHSIRHSFATRLFEKNVQIKTVQELMG 342

Query: 289 HFRLSTT-QIYTNV 301
           H  ++TT  IYT+V
Sbjct: 343 HSEIATTMDIYTHV 356


>gi|204600310|gb|ACI01670.1| integrase [Escherichia coli]
          Length = 298

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 37/160 (23%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207
           LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R         
Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198

Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                                  +A   +     F  + +   P    +R   +    FQ
Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
           R  ++     G+    T HTLRHSFAT LL +G D+R++Q
Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQ 298


>gi|257438451|ref|ZP_05614206.1| putative tyrosine recombinase XerC [Faecalibacterium prausnitzii
           A2-165]
 gi|257199030|gb|EEU97314.1| putative tyrosine recombinase XerC [Faecalibacterium prausnitzii
           A2-165]
          Length = 230

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 106/244 (43%), Gaps = 32/244 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           R  +L + E  R L+K +L++Y   TR  + FL     E   I  + ++    IR  + +
Sbjct: 7   RDEFLYDCEC-RHLAKGSLRNYRAATRFLVDFL-----ELRRITELEEVKPHHIRDLMKE 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           ++      R +   L   +++  YL      TE  +      ++ N   +    +Q  T+
Sbjct: 61  KQDMGSTPRYINDLLKVWRTWFNYL-----VTEGYLD-----ERDNPAKKVKPLRQPKTI 110

Query: 138 VDNV-------LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           +D         ++     T ++  RN  I+ LL+  G+R +E + + P++I  D   ++ 
Sbjct: 111 IDTFTVDEMRRMIRFYDGTDFLSVRNKTIIMLLFDTGMRCNEMILMEPEDIKPDYILVK- 169

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQR 245
            GKG K R+VP  P++ K +++Y  L    L    + P     LF    GKPL      R
Sbjct: 170 HGKGSKERVVPKSPALSKQLMKYRTLRDAYLK---EYPSRHKNLFLSKNGKPLTDEAVAR 226

Query: 246 YIRQ 249
            ++ 
Sbjct: 227 MLKH 230


>gi|125624092|ref|YP_001032575.1| site-specific tyrosine recombinase XerS [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124492900|emb|CAL97861.1| tyrosine recombinase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070865|gb|ADJ60265.1| site-specific tyrosine recombinase XerS [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 351

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 131/323 (40%), Gaps = 51/323 (15%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRR---TQ 81
           LS+ ++  Y  D R++L +L           ++IT+Q +  ++  E+  F+   R     
Sbjct: 34  LSEASIYEYCLDFRKYLQWLLDGSITNHNQIKEITLQELENVTKHELEDFVLHERLRLES 93

Query: 82  KIGDRS----LKRSLSGIKSFLKYLKKRKITTESNILNMRNL-------KKSNSLP-RAL 129
           K G  +    L R+++ IKS   YL ++      N    RN+       KKS +L  RA 
Sbjct: 94  KCGSNAHTSALNRTIAAIKSLYNYLCEQTEDEHGNTYMTRNVSRLIHIRKKSETLHYRAA 153

Query: 130 NEKQALTLVDNV------LLHTSHETKWIDARNS---------AILYLLYGCGLRISEAL 174
             +  L L D        + H    +    AR S         AIL L    GLR +E +
Sbjct: 154 QLEGKLFLGDETKAFLEFVEHNYENSISNRARTSFKKNKIRDLAILSLFLSSGLRCAELV 213

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---- 230
            +   ++  +   + +  K  K  +VP+     K I +Y+ +    ++  IQ        
Sbjct: 214 GINLDDLNLEAGKVSVMRKEGKKDVVPIAQFSHKYINDYF-VIRSSIDTEIQAFFITDYD 272

Query: 231 ---RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
              R I    +N  V  +Y    +      +  T HTLRH+FAT L +       + + L
Sbjct: 273 QKIRKISNASINKLV-AKYSEAYK------VRVTPHTLRHTFATRLYNVSHSQVLVSNQL 325

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH     T++YT++ S    D +
Sbjct: 326 GHSSTKPTELYTHIVSAEAKDAL 348


>gi|57237839|ref|YP_179087.1| phage integrase family site specific recombinase [Campylobacter
           jejuni RM1221]
 gi|57166643|gb|AAW35422.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni RM1221]
          Length = 223

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 86/189 (45%), Gaps = 21/189 (11%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTP 178
           +KS      LNE + + L +NVL     + +  ++ RNS ++ L+   GLRISEAL++  
Sbjct: 33  EKSEEKLNYLNENEIIRL-NNVLEKEKAKKEVYNSFRNSLLIKLMLYGGLRISEALNVKL 91

Query: 179 ---QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
              + + D+   + I GKG K +   +        LEY     F  N+     + +   G
Sbjct: 92  CDFEEVDDEILKISIIGKGGKEQFAFIKKEEVDDELEY-----FKENIQDSDYIMQTSTG 146

Query: 236 KPLNPG-----VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
           K LN       V   Y + L    GL      H LRH+ A  L + G +L  IQ IL H 
Sbjct: 147 KHLNRSNAFLIVNNIYAKALISKKGL------HLLRHTLAMRLTAKGTNLVVIQKILRHA 200

Query: 291 RLSTTQIYT 299
            L+TT IY 
Sbjct: 201 NLNTTTIYA 209


>gi|315644277|ref|ZP_07897447.1| hypothetical protein PVOR_02010 [Paenibacillus vortex V453]
 gi|315280652|gb|EFU43941.1| hypothetical protein PVOR_02010 [Paenibacillus vortex V453]
          Length = 348

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 73/162 (45%), Gaps = 2/162 (1%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
            + +  + +W   R+  I+ L+   GLR+ E  +L    I   + ++ +    +K R   
Sbjct: 162 FMKSPDQRQWAQWRDYVIMTLILDTGLRLGEICALEKMEIDFVKKSITLPASKNKNRKSR 221

Query: 202 LLP-SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +LP S   A L    +   + N +    +F    G+ L+    Q+   +      L  + 
Sbjct: 222 MLPLSTETARLLKQLIAETERNFDTTY-VFTTNYGEQLSEKTIQKSFDKYAEKAKLGRNV 280

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           + H LRH+FAT    NG  +  +Q ++GH  ++TT+ Y  ++
Sbjct: 281 SPHVLRHNFATMAAENGMSVFHLQKLMGHADIATTRKYVQIS 322


>gi|237718114|ref|ZP_04548595.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229452535|gb|EEO58326.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 390

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 65/162 (40%), Gaps = 44/162 (27%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIR----------IVPL------- 202
            ++ C  GLR+S+   L P +I          GKG+ I           I+PL       
Sbjct: 240 FIFACFTGLRLSDMYRLAPMHIFKTAD-----GKGEYIDMEMQKTEKPVIIPLSEEAKRW 294

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           LP  R   + ++D+                    P    V  R +R+     G+    + 
Sbjct: 295 LPKPRGNDIPFFDI--------------------PTTQTVIGRALRKWAEAAGIEKHISF 334

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           H+ RH+F T +L+ G DL +   ++GH  + TT+IY  +  K
Sbjct: 335 HSSRHTFGTMMLTLGADLFTTSKLMGHSNIQTTEIYAKIVDK 376


>gi|325911644|ref|ZP_08174052.1| phage integrase, N-terminal SAM domain protein [Lactobacillus iners
           UPII 143-D]
 gi|325476630|gb|EGC79788.1| phage integrase, N-terminal SAM domain protein [Lactobacillus iners
           UPII 143-D]
          Length = 326

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 108/248 (43%), Gaps = 25/248 (10%)

Query: 64  RQLSYTEIRAFISK----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           R ++  +IR ++S      ++ K+   +++R LS   SF  +L+      +  +  +  +
Sbjct: 88  RYITTEDIREYLSNYQLNHKSSKVTIDNIRRILS---SFFSWLEDEDYILKIPVRRIHKV 144

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K   S+    ++++   + D+        TK    R+ AI+ +L   G+R+ E + L   
Sbjct: 145 KTGQSIKETYSDEELEIMRDSC-------TK---IRDLAIIDMLASTGMRVGEMVLLNRD 194

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           ++  ++    + GKGDK RIV    +  K  LE Y     D   +    LF  +      
Sbjct: 195 DVNFEERECMVFGKGDKERIV-YFDARTKLHLEKY----LDSRTDNNSALFTSLSAPHER 249

Query: 240 PGV--FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
            G+   +  +R+L   LG+      H  R + AT  +  G  +  +Q +LGH R+ TT  
Sbjct: 250 LGIAGIEARLRKLGGELGI-YKVHPHKFRRTLATKAIDKGMPIEQLQKLLGHQRIDTTLQ 308

Query: 298 YTNVNSKN 305
           Y  V   N
Sbjct: 309 YAMVKQSN 316


>gi|239736500|gb|ACS12989.1| class 1 integrase IntI1 [Pseudomonas aeruginosa]
          Length = 298

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 37/160 (23%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207
           LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R         
Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198

Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                                  +A   +     F  + +   P    +R   +    FQ
Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
           R  ++     G+    T HTLRHSFAT LL +G D+R++Q
Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQ 298


>gi|150004164|ref|YP_001298908.1| transposase [Bacteroides vulgatus ATCC 8482]
 gi|255012337|ref|ZP_05284463.1| transposase [Bacteroides sp. 2_1_7]
 gi|149932588|gb|ABR39286.1| transposase [Bacteroides vulgatus ATCC 8482]
          Length = 411

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 22/153 (14%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDD----------QSTLRIQGKGDKIRIVPLLPSVRKA 209
            ++ C  GL  S+  +L+ +N++ D          +  L  + K   I  +PLLP V  A
Sbjct: 250 FVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRVKLEHRRKASSISNIPLLP-VPLA 308

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           ILE Y   P  +     LP+    +           Y++++  + G+  + T H  RH+F
Sbjct: 309 ILEKYREHPICVKKGCCLPVMCNQK--------MNSYLKEIADFCGIKKNLTTHVARHTF 360

Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T + L+N   L+ +  +LGH     TQ Y  V
Sbjct: 361 GTTVTLANNVPLQDVSVMLGHASTRMTQHYARV 393


>gi|330830137|ref|YP_004393089.1| phage integrase [Aeromonas veronii B565]
 gi|328805273|gb|AEB50472.1| Phage integrase [Aeromonas veronii B565]
          Length = 321

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 62/143 (43%), Gaps = 23/143 (16%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           ++ L    G R SE   LT   +  ++ T   + K  K R VP+ P              
Sbjct: 180 VVKLCLATGARWSEVEELTQSQVSPNRITF-TRTKSKKSRSVPISP-------------- 224

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNG 277
               L  QLP  RG     L    ++ +   + R  L LP     H LRH+FA+H + NG
Sbjct: 225 ---ELYAQLPRKRGR----LFSDCYRAFEMVVERAGLELPAGQNTHVLRHTFASHFMMNG 277

Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300
           G++  +Q ILGH  ++ T  Y +
Sbjct: 278 GNILVLQKILGHSTIAMTMRYAH 300


>gi|253573104|ref|ZP_04850494.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|256842101|ref|ZP_05547606.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|301308733|ref|ZP_07214685.1| mobilizable transposon, int protein [Bacteroides sp. 20_3]
 gi|251837298|gb|EES65399.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|256736417|gb|EEU49746.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|300833257|gb|EFK63875.1| mobilizable transposon, int protein [Bacteroides sp. 20_3]
          Length = 397

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 19/144 (13%)

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           CGLR+S+   L   ++      +RI+ K  K +  PL   +    L++            
Sbjct: 254 CGLRVSDIRKLKWNDLQKSGERIRIEIKMQKTK-EPLYLPISDEALKW------------ 300

Query: 226 QLPLFRGIRGKPL-----NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
            LP     +G  L     + G   + +++  +  G+    + H  RH+ AT +L+ G DL
Sbjct: 301 -LPQQNEAKGDDLIFPLTHEGTINKILQKWAKDAGVIKHISFHVARHTHATMMLTLGADL 359

Query: 281 RSIQSILGHFRLSTTQIYTNVNSK 304
            ++  +LGH  ++TTQIY  +  K
Sbjct: 360 YTVSKLLGHKNIATTQIYAKIVDK 383


>gi|150400365|ref|YP_001324132.1| phage integrase family protein [Methanococcus vannielii SB]
 gi|150013068|gb|ABR55520.1| phage integrase family protein [Methanococcus vannielii SB]
          Length = 182

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 18/167 (10%)

Query: 152 IDARNSAILY-LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKA 209
           ID++   + + +LYG  LR+SE L++T +NI   +   ++   K ++  I  +   +   
Sbjct: 22  IDSKEHKLFFKMLYGMALRVSELLTITVKNINLKEGVCKLLDTKTERFEITVIPEWLYSD 81

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           I  +      D NLN + PLF+  + +     + ++Y +  +  +    ST  HT R S 
Sbjct: 82  IFGH----ILDNNLNDEDPLFK-FKNRTYAWELVKKYTKVAK--INKEFST--HTFRRSR 132

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-------GGDW 309
           A HLL++G  L  +   L H  ++TT  Y  +  ++        GDW
Sbjct: 133 ALHLLNDGVPLEKVSKYLRHKSINTTMHYLKITVEDIKKELNKIGDW 179


>gi|83814942|ref|YP_445217.1| Phage integrase family protein [Salinibacter ruber DSM 13855]
 gi|83756336|gb|ABC44449.1| Phage integrase family protein [Salinibacter ruber DSM 13855]
          Length = 415

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 22/181 (12%)

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
             E +AL  VD  L     E + +D      L+ LYG G+R S+  +L  +++       
Sbjct: 229 FEEIEALEEVD--LPEEGSERRALDY----FLFALYGGGMRFSDVATLKHKHL----EGG 278

Query: 189 RIQGKGDKIRIVPLLPSVRKA--ILEYYDLCPFDLNLNIQLPLFRGI---------RGKP 237
           RIQ K  K      +P V KA  IL+ YD  P +    +  P+  G          R   
Sbjct: 279 RIQYKMKKTSEGAGVPIVDKAEAILDRYDNRPQEPESRV-FPILDGYDLDEMEDVQRAIE 337

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
                  R ++++R+   +  + T H  RHS A  L    GD+  ++ ILGH R+  T+ 
Sbjct: 338 SRNAYVNRQLKKVRKKAEIETNLTFHLSRHSAAWKLYREMGDIYKVKRILGHSRVEVTEE 397

Query: 298 Y 298
           Y
Sbjct: 398 Y 398


>gi|294782271|ref|ZP_06747597.1| integrase/recombinase [Fusobacterium sp. 1_1_41FAA]
 gi|294480912|gb|EFG28687.1| integrase/recombinase [Fusobacterium sp. 1_1_41FAA]
          Length = 280

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 115/270 (42%), Gaps = 32/270 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N++  LE E      T+ S   D  QFLI+L  +      I    +L    I+ + +K 
Sbjct: 7   KNFIYYLEFEENKKHNTVISIRKDLNQFLIYLNEHD-----IIDFNKLDELLIKEYFTKL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +T++I   +  R LS IK F KYL  + +  + + + + + K          + + LT  
Sbjct: 62  KTEEISASTFNRRLSSIKKFYKYLVDKGLKEKGSEILIESEKNDEK------KIEYLTPE 115

Query: 139 DNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDK 196
           +  L+ T+ E +  +  R+  +  LLY  G+ ++E LSL   N  ++ +    ++ K  K
Sbjct: 116 EINLVRTTMEGENFNILRDRLMFELLYSSGMTVAELLSLGEVNFNLEKREIYILKNKLSK 175

Query: 197 IR---------IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
                       +  L S ++   E       D N NI   +F     + L     +R I
Sbjct: 176 TMYFSETCKKFYIKFLNSKKEKFKE-------DYNPNI---IFNNNSNERLTDRSVRRLI 225

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            +      L    + +TLRHSF  ++L NG
Sbjct: 226 NKYAEMANLNKEISPYTLRHSFCIYMLKNG 255


>gi|299147785|ref|ZP_07040848.1| integrase protein [Bacteroides sp. 3_1_23]
 gi|298513968|gb|EFI37854.1| integrase protein [Bacteroides sp. 3_1_23]
          Length = 390

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 46/163 (28%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           A L+  Y  GLR S+  +LT  NI++      I           +  SV+          
Sbjct: 238 AFLFCCYA-GLRYSDFTNLTSANIVEFHQETWI-----------IYKSVKTG-------- 277

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST----------------- 260
                + ++LPL+    GK +   + QRY   L  +  L  ++                 
Sbjct: 278 -----MEVRLPLYLLFEGKGIQ--ILQRYKDDLNSFFKLKDNSNINKELNILAGLAKIDK 330

Query: 261 --TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             + HT RH+ AT LL NG ++ ++Q +LGH  + TTQ+Y N+
Sbjct: 331 RVSFHTARHTNATLLLYNGANITTVQKLLGHKSVKTTQVYANI 373


>gi|294505887|ref|YP_003569945.1| phage integrase [Salinibacter ruber M8]
 gi|294342215|emb|CBH22993.1| phage integrase [Salinibacter ruber M8]
          Length = 209

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 78/192 (40%), Gaps = 49/192 (25%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKG--DKIRIVP---------LL 203
           N  I +LLYG GLR+SEAL L  + +    S L ++ GKG  D+  ++P          L
Sbjct: 19  NRLIAHLLYGSGLRLSEALRLRVKELDVGTSRLHVRDGKGSTDRTTVLPERLHGPLRRHL 78

Query: 204 PSVRK-----------------AILEYYDLCP--------FDLNLNIQLPLFRGIRGKPL 238
            +V+                  A+ E Y            F      + P    +R    
Sbjct: 79  KTVKAQHEADCADGVGGVYLPDALAEKYPNAATEWRWQYVFPSTTLSEDPRSGAVRRHHR 138

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +    QR +++      +    T HTLRHSFATHLL +G D+R            TT  Y
Sbjct: 139 SDSAVQRAVKKAANAADIEKRATCHTLRHSFATHLLQDGTDVR------------TTMQY 186

Query: 299 TNVNSKNGGDWM 310
            +V  ++G D M
Sbjct: 187 VHVLEQSGADVM 198


>gi|224368839|ref|YP_002603000.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2]
 gi|223691555|gb|ACN14838.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2]
          Length = 384

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 71/156 (45%), Gaps = 10/156 (6%)

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRK 208
           KW +  ++  +      GLR  E   LT +N+ +  QS +    KG   ++   LP   K
Sbjct: 207 KWHNKMSAGFILFCLHTGLRRGELFKLTWENVDLTRQSMVLKDPKG---KLDQTLPLSDK 263

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           A+ E  +  P D        +F G  GK      F+    +++   GLP     H LRH 
Sbjct: 264 AV-EVLNSLPKDYKTQW---IFYGKDGKQRTD--FKGPWDRIKVAAGLPKDFRLHGLRHH 317

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           FA+ L+S G DL ++Q +L H   + TQ Y ++  K
Sbjct: 318 FASALVSAGVDLYTVQKLLCHKDAAMTQRYAHLADK 353


>gi|201067901|ref|ZP_03217787.1| hypothetical protein CJBH_2432 [Campylobacter jejuni subsp. jejuni
           BH-01-0142]
 gi|200004519|gb|EDZ04997.1| hypothetical protein CJBH_2432 [Campylobacter jejuni subsp. jejuni
           BH-01-0142]
          Length = 312

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 86/189 (45%), Gaps = 21/189 (11%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTP 178
           +KS      LNE + + L +NVL     + +  ++ RNS ++ L+   GLRISEAL++  
Sbjct: 122 EKSEEKLNYLNENEIIRL-NNVLEKEKAKKEVYNSFRNSLLIKLMLYGGLRISEALNVKL 180

Query: 179 ---QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
              + + D+   + I GKG K +   +        LEY     F  N+     + +   G
Sbjct: 181 CDFEEVDDEILKISIIGKGGKEQFAFIKKEEVDDELEY-----FKENIQDSDYIMQTSTG 235

Query: 236 KPLNPG-----VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
           K LN       V   Y + L    GL      H LRH+ A  L + G +L  IQ IL H 
Sbjct: 236 KHLNRSNAFLIVNNIYAKALISKKGL------HLLRHTLAMRLTAKGTNLVVIQKILRHA 289

Query: 291 RLSTTQIYT 299
            L+TT IY 
Sbjct: 290 NLNTTTIYA 298


>gi|253577885|ref|ZP_04855157.1| integrase [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850203|gb|EES78161.1| integrase [Ruminococcus sp. 5_1_39BFAA]
          Length = 323

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 90/206 (43%), Gaps = 33/206 (16%)

Query: 38  SYECDTRQFLIFL-----AF--YTEEKITIQTIRQLSYTEI-------RAFISKRRTQKI 83
           SY  D R F  FL     AF  Y+ +  T+  + QL   +I       + + +  +T+  
Sbjct: 57  SYAYDIRIFFQFLLDENPAFKDYSMKDFTVDVLDQLKAIDIEEYQEYLKVYKNGDKTETN 116

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKI-------------TTESNILNMRNLKKSNSLPRALN 130
           G+R LKR +S ++SF  Y  K +              T E NI+ +   + +  L    +
Sbjct: 117 GERGLKRKISALRSFYAYYYKHEFIQTNPTVLVDVPKTHEKNIIRLDADEVAMLLEHIEH 176

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
               LT    V    + E      R+ AI+ LL G G+R+SE + L  +++    + +++
Sbjct: 177 CGDELTGQKRVYYEKTKE------RDLAIVTLLLGTGIRVSECVGLDVEDVDFKNNGIKV 230

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDL 216
             KG    +V     V KA+ +Y ++
Sbjct: 231 TRKGGNEMVVYFGHEVEKALKKYLEV 256


>gi|218129163|ref|ZP_03457967.1| hypothetical protein BACEGG_00738 [Bacteroides eggerthii DSM 20697]
 gi|217988663|gb|EEC54982.1| hypothetical protein BACEGG_00738 [Bacteroides eggerthii DSM 20697]
          Length = 385

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 77/150 (51%), Gaps = 20/150 (13%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGK---GDKIRI-VPLLPSVRK-AIL 211
           A L+  Y  G+R S+ ++L+ +N +D +Q T  I      G ++R+ + LL S +  AIL
Sbjct: 237 AFLFCCYA-GMRYSDFINLSSENFVDINQETWLIYKSVKTGTEVRLPLYLLFSGKGIAIL 295

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
             Y            L  F  +R    N  V +  I  + R  GL    + HT RH+ AT
Sbjct: 296 NKY---------RDNLEDFFHLRD---NSNVNKDLI-IITRLAGLSKRISFHTARHTNAT 342

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            L+ NG ++ ++Q +LGH  + TTQ+YTNV
Sbjct: 343 LLIYNGINITTVQKLLGHKSVKTTQVYTNV 372


>gi|260592906|ref|ZP_05858364.1| integrase [Prevotella veroralis F0319]
 gi|260535106|gb|EEX17723.1| integrase [Prevotella veroralis F0319]
          Length = 406

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 95/209 (45%), Gaps = 35/209 (16%)

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMD 183
           PR++ + +   ++D        E +W + R    L++ + C  GL IS+  +L  +NI+ 
Sbjct: 222 PRSITQDELQKIID-------LEIEWENYRIVRDLFV-FSCFTGLAISDVRNLREENIVF 273

Query: 184 DQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-- 238
           ++  L I+G+  K +    V +LP   + +  Y                 RGIR   +  
Sbjct: 274 EEGELCIKGRRMKTKTPYRVQVLPPALEIMNRY-----------------RGIRAGFVFD 316

Query: 239 --NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTT 295
                +    +  ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TT
Sbjct: 317 VPTTDIILNGMHYIQRNIGMKTPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTT 376

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           QIY  V+S+     M ++  +   + T K
Sbjct: 377 QIYAAVSSERIHRDMQKVQQRIQDTFTLK 405


>gi|229106681|ref|ZP_04236913.1| Tyrosine recombinase [Bacillus cereus Rock3-28]
 gi|228676734|gb|EEL31348.1| Tyrosine recombinase [Bacillus cereus Rock3-28]
          Length = 358

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 126/304 (41%), Gaps = 42/304 (13%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK---------RRTQKIGD 85
           TL +Y  D R F  +L   +E+ I ++ I+ + ++++     K         +  Q + +
Sbjct: 43  TLLNYVYDFRVFFNWLL--SEQIIELKPIKDIPFSDLENLKKKDVENFMRFLKLQQSMQN 100

Query: 86  RSLKRSLSGIKSFLKYL------------------KKRKITTESNILNMRNLKKSNSLPR 127
            S+ R +S +KS  KYL                   K +I  +   LN R  +  + +  
Sbjct: 101 SSVNRKISALKSLFKYLTALSENEDGECYFYRNVMAKIEIHKDKETLNARAKRMRSKIFH 160

Query: 128 ALNEKQALTLV--DNVLLHTSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIM 182
             ++++ L  V  ++    T H+  +      R+ AIL L  G G+R+SE   L  ++I 
Sbjct: 161 NDDDQEFLNYVKYEHEKSLTKHQLFYFLRDKDRDVAILSLFLGSGIRVSELADLRMEDIN 220

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKP 237
             +  + +  KG+K   V + P     I +Y ++      P     N+ L  ++    +P
Sbjct: 221 LKERLIDVIRKGNKEDSVWITPIALNDIEKYMEIRDNKYAPGKELKNVFLSKYKHT-AQP 279

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+    Q  + +  +  G  +S   H LRH+ A  L     D   +   LGH    T  +
Sbjct: 280 LSVRAIQDIVEKYTKAYGKRMS--PHKLRHTLANKLYMEEKDSLQVMQQLGHTSQDTALL 337

Query: 298 YTNV 301
           YT +
Sbjct: 338 YTQL 341


>gi|154493767|ref|ZP_02033087.1| hypothetical protein PARMER_03109 [Parabacteroides merdae ATCC
           43184]
 gi|160890046|ref|ZP_02071049.1| hypothetical protein BACUNI_02486 [Bacteroides uniformis ATCC 8492]
 gi|154086517|gb|EDN85562.1| hypothetical protein PARMER_03109 [Parabacteroides merdae ATCC
           43184]
 gi|156860434|gb|EDO53865.1| hypothetical protein BACUNI_02486 [Bacteroides uniformis ATCC 8492]
          Length = 454

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 22/153 (14%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDD----------QSTLRIQGKGDKIRIVPLLPSVRKA 209
            ++ C  GL  S+  +L+ +N++ D          +  L  + K   I  +PLLP V  A
Sbjct: 293 FVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRVKLEHRRKASSISNIPLLP-VPLA 351

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           ILE Y   P  +     LP+    +           Y++++  + G+  + T H  RH+F
Sbjct: 352 ILEKYREHPICVKKGCCLPVMCNQK--------MNSYLKEIADFCGIKKNLTTHVARHTF 403

Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T + L+N   L+ +  +LGH     TQ Y  V
Sbjct: 404 GTTVTLANNVPLQDVSVMLGHASTRMTQHYARV 436


>gi|298377186|ref|ZP_06987140.1| transposase [Bacteroides sp. 3_1_19]
 gi|298266170|gb|EFI07829.1| transposase [Bacteroides sp. 3_1_19]
          Length = 412

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 22/153 (14%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDD----------QSTLRIQGKGDKIRIVPLLPSVRKA 209
            ++ C  GL  S+  +L+ +N++ D          +  L  + K   I  +PLLP V  A
Sbjct: 251 FVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRVKLEHRRKASSISNIPLLP-VPLA 309

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           ILE Y   P  +     LP+    +           Y++++  + G+  + T H  RH+F
Sbjct: 310 ILEKYREHPICVKKGCCLPVMCNQK--------MNSYLKEIADFCGIKKNLTTHVARHTF 361

Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T + L+N   L+ +  +LGH     TQ Y  V
Sbjct: 362 GTTVTLANNVPLQDVSVMLGHASTRMTQHYARV 394


>gi|170738181|ref|YP_001779441.1| integrase family protein [Burkholderia cenocepacia MC0-3]
 gi|169820369|gb|ACA94951.1| integrase family protein [Burkholderia cenocepacia MC0-3]
          Length = 398

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 77/192 (40%), Gaps = 34/192 (17%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSVR 207
           R   +  LLY  GLRI+EA   T             ++  L + GKG + R+VP    + 
Sbjct: 208 RARWLFTLLYLGGLRITEAADTTMGQFFCRRDANGHERWWLDVTGKGGRQRLVPATDEMM 267

Query: 208 KAILEY---YDLCPFDLN---LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL--- 258
             +  Y   + L    L+     + LP   G   KPL      R ++Q+ R+    L   
Sbjct: 268 AELTRYRRTHGLPALPLDGEPTPLVLPF--GQARKPLTRAALHRIVKQVFRHAAGRLRAN 325

Query: 259 ------------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
                         +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +    
Sbjct: 326 GETGEQAARVLEQASAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHADD--- 382

Query: 307 GDWMMEIYDQTH 318
            DW     ++ H
Sbjct: 383 -DWRHRETEEKH 393


>gi|154494486|ref|ZP_02033806.1| hypothetical protein PARMER_03843 [Parabacteroides merdae ATCC
           43184]
 gi|154085930|gb|EDN84975.1| hypothetical protein PARMER_03843 [Parabacteroides merdae ATCC
           43184]
          Length = 411

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 22/153 (14%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDD----------QSTLRIQGKGDKIRIVPLLPSVRKA 209
            ++ C  GL  S+  +L+ +N++ D          +  L  + K   I  +PLLP V  A
Sbjct: 250 FVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRVKLEHRRKASSISNIPLLP-VPLA 308

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           ILE Y   P  +     LP+    +           Y++++  + G+  + T H  RH+F
Sbjct: 309 ILEKYREHPVCIKKGCCLPVMCNQK--------MNSYLKEIADFCGIKKNLTTHVARHTF 360

Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T + L+N   L+ +  +LGH     TQ Y  V
Sbjct: 361 GTTVTLANNVPLQDVSVMLGHASTRMTQHYARV 393


>gi|157377375|ref|YP_001475975.1| phage integrase [Shewanella sediminis HAW-EB3]
 gi|157319749|gb|ABV38847.1| phage integrase [Shewanella sediminis HAW-EB3]
          Length = 309

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 81/177 (45%), Gaps = 19/177 (10%)

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
           + ++I  R+  IL L    GLR  E  +LT  +I  D+ TL ++ GKG K R  P+ P+ 
Sbjct: 129 DKRYIGKRDCCILALFLSTGLRRFELANLTVSDIHLDKRTLTVKSGKGKKPRKQPI-PT- 186

Query: 207 RKAILEYYDLC-------PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
               L Y D         P DL   I   + +  RG   +  ++Q  I + R      ++
Sbjct: 187 --WALTYIDNWLRVRTHQPGDLFNPIWNNVIKHDRGLS-SAALYQ--IVKARTLAATGIT 241

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            + H LR +F T LL+   DL +   + GH  ++TTQIY     K     M E  DQ
Sbjct: 242 ISPHDLRRTFITELLNQKVDLSTASKLAGHANVTTTQIY----DKRDESVMREAIDQ 294


>gi|301309611|ref|ZP_07215553.1| transposase [Bacteroides sp. 20_3]
 gi|300832700|gb|EFK63328.1| transposase [Bacteroides sp. 20_3]
          Length = 412

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 22/153 (14%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDD----------QSTLRIQGKGDKIRIVPLLPSVRKA 209
            ++ C  GL  S+  +L+ +N++ D          +  L  + K   I  +PLLP V  A
Sbjct: 250 FVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRVKLEHRRKASSISNIPLLP-VPLA 308

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           ILE Y   P  +     LP+    +           Y++++  + G+  + T H  RH+F
Sbjct: 309 ILEKYREHPICVKKGCCLPVMCNQK--------MNSYLKEIADFCGIKKNLTTHVARHTF 360

Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T + L+N   L+ +  +LGH     TQ Y  V
Sbjct: 361 GTTVTLANNVPLQDVSVMLGHASTRMTQHYARV 393


>gi|222430247|gb|ACM50312.1| integrase [Escherichia coli]
          Length = 298

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 113/287 (39%), Gaps = 58/287 (20%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQ 298


>gi|77406673|ref|ZP_00783715.1| prophage LambdaSa2, site-specific recombinase, phage integrase
           family [Streptococcus agalactiae H36B]
 gi|77174714|gb|EAO77541.1| prophage LambdaSa2, site-specific recombinase, phage integrase
           family [Streptococcus agalactiae H36B]
          Length = 263

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 34/166 (20%)

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK-----GDK--- 196
           TS E K+   ++   +YL+   GL+ SEA+ LT  +I  D+  L +         DK   
Sbjct: 92  TSKEVKY---KSHFFIYLIAKTGLKFSEAMGLTWSDIDRDELLLHVNKAYKVFGSDKGFQ 148

Query: 197 -------IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
                  IR VP+  +  K +L+ Y L         +  +F GI    +N        + 
Sbjct: 149 PTKNKYLIRYVPINNTTIK-LLDQYRLL-----FKTETRIFEGISNTAVN--------KT 194

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           L++ +G  +    H+LRH++ ++L+S G DL +I  I+GH  L+ T
Sbjct: 195 LKKIVGRNIHI--HSLRHTYVSYLISEGIDLFAISKIVGHKDLNIT 238


>gi|323159070|gb|EFZ45070.1| resolvase [Escherichia coli E128010]
          Length = 212

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 40/182 (21%)

Query: 153 DARNSAILYLLYGCGLRISEALSLT-------PQNIMDDQSTL--------RIQGK---G 194
           D R   +L  L+  G RI+EAL+LT       P       +TL        R  G+   G
Sbjct: 10  DLRRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQPATLKQRTEKAARTAGRTPAG 69

Query: 195 DKIR-IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF-RGIR-GKPLNPGVFQRYIRQLR 251
            + R +VPL  S   + L+        +   +++P+  R  R G+     +++   R +R
Sbjct: 70  QQTRRLVPLSDSWYVSQLQ-------TMVATLKIPMEQRNKRTGRTEKARIWEVTDRTVR 122

Query: 252 RYLG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            ++G              +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT
Sbjct: 123 TWIGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYT 182

Query: 300 NV 301
            V
Sbjct: 183 KV 184


>gi|260590882|ref|ZP_05856340.1| putative integrase [Prevotella veroralis F0319]
 gi|260537173|gb|EEX19790.1| putative integrase [Prevotella veroralis F0319]
          Length = 421

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 82/185 (44%), Gaps = 30/185 (16%)

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTL 188
           E+ ALT  D   L +    + +D  N   L  L GC  GL  S+   L     MDD  TL
Sbjct: 219 ERNALTSDDLHKLLSYRPHRSVD--NHCRLIFLLGCFTGLAFSDLKKLR----MDDVYTL 272

Query: 189 R--------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                     + K     IVPLLP   + +    D     L       LFR     P N 
Sbjct: 273 DDGRRYISLCRTKTQNRSIVPLLPIAEEILTIVSDGQKEGL-------LFREF---PTNS 322

Query: 241 GVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQI 297
             F R IR +    GLP  T  T+HT RH+FAT + L NG  + ++  +LGH  +STT++
Sbjct: 323 H-FNRKIRDIIIKAGLPSHTEATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEL 381

Query: 298 YTNVN 302
           Y  V+
Sbjct: 382 YAKVS 386


>gi|189010585|ref|ZP_02808040.2| resolvase [Escherichia coli O157:H7 str. EC4076]
 gi|189402414|ref|ZP_02782304.2| resolvase [Escherichia coli O157:H7 str. EC4401]
 gi|189403253|ref|ZP_02794354.2| resolvase [Escherichia coli O157:H7 str. EC4486]
 gi|189403269|ref|ZP_02794244.2| resolvase [Escherichia coli O157:H7 str. EC4486]
 gi|189404239|ref|ZP_02787990.2| resolvase [Escherichia coli O157:H7 str. EC4501]
 gi|189405344|ref|ZP_02814942.2| resolvase [Escherichia coli O157:H7 str. EC869]
 gi|188999522|gb|EDU68508.1| resolvase [Escherichia coli O157:H7 str. EC4076]
 gi|189355637|gb|EDU74056.1| resolvase [Escherichia coli O157:H7 str. EC4401]
 gi|189361655|gb|EDU80074.1| resolvase [Escherichia coli O157:H7 str. EC4486]
 gi|189361705|gb|EDU80124.1| resolvase [Escherichia coli O157:H7 str. EC4486]
 gi|189366764|gb|EDU85180.1| resolvase [Escherichia coli O157:H7 str. EC4501]
 gi|189370537|gb|EDU88953.1| resolvase [Escherichia coli O157:H7 str. EC869]
          Length = 256

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 95/226 (42%), Gaps = 52/226 (23%)

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL------------LYGCGL 168
           +  SLP A++   AL L    ++H       +    SA+L+             L+  G 
Sbjct: 10  QPASLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPNLHRKMLLATLWNTGA 69

Query: 169 RISEALSLT-------PQNIMDDQSTL------------RIQGKGDKIRIVPLLPSVRKA 209
           RI+EAL+LT       P       +TL            R+       R+VPL  S   +
Sbjct: 70  RINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRMPAGQQTHRLVPLSDSWYVS 129

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG------------ 255
            L+        +   +++P+ R  R  G+     +++   R +R ++G            
Sbjct: 130 QLQ-------TMVATLKIPMERRNRRTGRTEKARIWEVTDRTVRTWIGEAVAAAAADGVT 182

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             +  T HT RHS+A H+L  G  L+ +QS++GH  +S+ ++YT V
Sbjct: 183 FSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSKEVYTKV 228


>gi|330814764|ref|YP_004362939.1| integrase family protein [Burkholderia gladioli BSR3]
 gi|327374756|gb|AEA66107.1| integrase family protein [Burkholderia gladioli BSR3]
          Length = 390

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 75/180 (41%), Gaps = 30/180 (16%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSV 206
            R   +  LLY  GLRISE    T  +          ++  L I GKGDK+R+VP    +
Sbjct: 200 GRARWLFTLLYLGGLRISEVSGNTMGDFFCRRDADGHERWWLEITGKGDKVRLVPASAEM 259

Query: 207 RKAILEY------------YDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLR-- 251
              +  Y            ++  P  L L   + PL R      +  G+F     +LR  
Sbjct: 260 MVELGRYRRERGLAILPTGHEDTPLVLPLGQSMKPLTRAAL-HTIVKGIFAGAAEKLRMR 318

Query: 252 ------RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
                 R   L    +AH LRHS  +H+     DLR I+  LGH  ++TT +Y + +  +
Sbjct: 319 GEECAARAAQLE-RASAHWLRHSAGSHMADGDVDLRMIRDNLGHASITTTSLYLHADDDD 377


>gi|304382636|ref|ZP_07365130.1| integrase [Prevotella marshii DSM 16973]
 gi|304336261|gb|EFM02503.1| integrase [Prevotella marshii DSM 16973]
          Length = 429

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 14/159 (8%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP--LLPSVRKAILEYYDLC 217
            ++ C  GL   +  +L P+NI+       I  K  K  +    LL  + K+I+  Y   
Sbjct: 268 FVFSCFTGLAYIDVYNLAPENIVTLNGKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSGK 327

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            +         LF  +  + LN      Y++++    G+  + T H  RH+FAT  LS G
Sbjct: 328 TYR-----DGKLFPMLTNQKLNS-----YLKEIADICGIKKNLTFHLARHTFATMSLSKG 377

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + S+  +LGH  + TTQ+Y  + +K     M E+ D+
Sbjct: 378 VPIESVSKMLGHTNIKTTQLYARITNKKIEHDMDELADK 416


>gi|300825315|ref|ZP_07105396.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
 gi|300522214|gb|EFK43283.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
          Length = 199

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 36/174 (20%)

Query: 159 ILYLLYGCGLRISEALSLT-------PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           +L +L+  G RI+EAL+LT       P       +TL+ Q      R    +P+ ++   
Sbjct: 2   LLAILWNTGARINEALALTRGDFSLAPPYPFVQLATLK-QRTEKAARTAGRMPAGQQT-- 58

Query: 212 EYYDLCPFD----------LNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG---- 255
             + L P            +   +++P+ R  +  G+     +++   R +R ++G    
Sbjct: 59  --HRLVPLSDAWYVSQVQTMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTWIGEAVA 116

Query: 256 --------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                     +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 117 AAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 170


>gi|207724624|ref|YP_002255021.1| integrase / recombinase protein [Ralstonia solanacearum MolK2]
 gi|206589846|emb|CAQ36807.1| integrase / recombinase protein [Ralstonia solanacearum MolK2]
          Length = 397

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 74/176 (42%), Gaps = 28/176 (15%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIM--------DDQSTLRIQGKGDKIRIVPLLPS 205
           AR   +  +LY  GLR +E  S TP   +         D+  + +QGKG K R+VP    
Sbjct: 206 ARCRWLFTVLYLAGLRAAEIAS-TPMGAVFRRRDAAGADRWWIEVQGKGSKTRLVPATDE 264

Query: 206 VRKAILEYYDL--CPFDLNLNIQLPLFRGIRGK--PLNPGVFQRYIRQL----------- 250
           +   +  Y      P    L    PL   + G+  PL+ G     ++++           
Sbjct: 265 LIAELARYRRAHGLPPSPQLGEARPLLLPLIGQEQPLSRGAVHLIVKEVFTLAAERLRAR 324

Query: 251 ----RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               +    L  S +AH +RH+  +H+     DLR ++  LGH  L+TT +Y +  
Sbjct: 325 GPEWQAQADLLASASAHWIRHTAGSHMTDQQVDLRFVRDNLGHASLATTSVYLHAE 380


>gi|307566493|ref|ZP_07628924.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307344804|gb|EFN90210.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 439

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 81/185 (43%), Gaps = 30/185 (16%)

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTL 188
           E+ ALT  D   L +    + +D  N   L  L GC  GL  S+   L     MDD  T 
Sbjct: 219 ERNALTSDDLHKLLSYRPHRSVD--NHCRLIFLLGCFTGLAFSDLKKLR----MDDVYTF 272

Query: 189 R--------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                     + K     IVPLLP   + +    D     L       LFR     P N 
Sbjct: 273 GDGRRYISLCRTKTQNRSIVPLLPIAEEILTIVSDGRKEGL-------LFREF---PTN- 321

Query: 241 GVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQI 297
             F R IR +    GLP  T  T+HT RH+FAT + L NG  + ++  ILGH  +STT++
Sbjct: 322 SHFNRKIRDIIIKAGLPPHTEATSHTARHTFATTICLENGLPIETVSKILGHRFISTTEL 381

Query: 298 YTNVN 302
           Y  V+
Sbjct: 382 YAKVS 386


>gi|300820004|ref|ZP_07100184.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 107-1]
 gi|300527453|gb|EFK48515.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 107-1]
 gi|321271395|gb|ADW79485.1| putative site-specific recombinase [Escherichia coli]
 gi|323133074|gb|ADX20502.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 4/74]
 gi|323959152|gb|EGB54818.1| phage integrase [Escherichia coli H489]
          Length = 261

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 36/180 (20%)

Query: 153 DARNSAILYLLYGCGLRISEALSLT-------PQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           D R   +L  L+  G RI+EAL+LT       P       +TL+ Q      R    +P+
Sbjct: 57  DLRRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLK-QRTEKAARTAGRMPA 115

Query: 206 VRKAILEYYDLCPFD----------LNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRY 253
            ++     + L P            +   +++P+ R  +  G+     +++   R +R +
Sbjct: 116 GQQT----HRLVPLSDAWYVSQLQTMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTW 171

Query: 254 LG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +G              +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 172 IGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|255693724|ref|ZP_05417399.1| integrase protein [Bacteroides finegoldii DSM 17565]
 gi|260620475|gb|EEX43346.1| integrase protein [Bacteroides finegoldii DSM 17565]
          Length = 391

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 16/148 (10%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----GDKIRIVPLLPSVRKAILEY 213
           A L+  Y  GLR S+   LT +NI++      +  K    G ++R+   L    K I   
Sbjct: 238 AFLFCCYA-GLRYSDFTHLTSENIIEFHKEFWLIYKSVKTGTEVRLPLYLLFEGKGI--- 293

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
           + L  +  +LN     F+      LN     + +  L +  G+    + HT RH+ AT L
Sbjct: 294 HILHRYKNDLN---SFFKLKDNSNLN-----KELNVLAKLAGISKHISFHTARHTNATLL 345

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + NG ++ ++Q +LGH  + TTQ+Y N+
Sbjct: 346 IYNGANITTVQKLLGHKSVKTTQVYANI 373


>gi|167621565|ref|YP_001672073.1| integrase family protein [Caulobacter sp. K31]
 gi|167351688|gb|ABZ74414.1| integrase family protein [Caulobacter sp. K31]
          Length = 268

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 20/176 (11%)

Query: 143 LHTSHETKWID------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195
           L    E +++D       R   +L  L   G R SE + L  +++   +  + I +GKG 
Sbjct: 51  LTVEEELRFLDRAYAQGGRTGLMLQTLLETGARASELVQLRIEDVSLAERVVTIREGKGG 110

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQR-----YIRQ 249
           K R +P    +R+   +   L    +      PLF    +G    P V  R      +R+
Sbjct: 111 KRREIP----IRR---DLAQLLQLHIGARRAGPLFASRQQGSGPTPHVLTRQRIGQVVRE 163

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           + R  G+      H LRH+ AT LL+ G D+  +Q  LGH  ++TT++Y    +  
Sbjct: 164 VARDAGITKRVYPHLLRHTVATRLLALGMDITDLQRFLGHESITTTRLYAETTAAT 219


>gi|296164063|ref|ZP_06846686.1| XerC/XerD family integrase/recombinase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295900611|gb|EFG79994.1| XerC/XerD family integrase/recombinase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 310

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 40/75 (53%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LFRG  G P+ P      +  + R  GL      H LRH++ ++++  G  +  +  +LG
Sbjct: 215 LFRGRVGAPMRPDAIGELMAAVSRRAGLDTPVRPHQLRHAYGSNVVDAGAGIDVVADLLG 274

Query: 289 HFRLSTTQIYTNVNS 303
           H  +S++QIY + ++
Sbjct: 275 HAAVSSSQIYLHPDA 289


>gi|297566460|ref|YP_003685432.1| integrase family protein [Meiothermus silvanus DSM 9946]
 gi|296850909|gb|ADH63924.1| integrase family protein [Meiothermus silvanus DSM 9946]
          Length = 353

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 134/323 (41%), Gaps = 57/323 (17%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS----------YTEIRAFISK--- 77
           LS  TL++Y    R FL +          +Q ++  +           TE    + +   
Sbjct: 48  LSPKTLETYRLGVRDFLAWAWPPDAPAPQVQILKATADDLDRYIADLQTEGSHLVGRVLE 107

Query: 78  -RRTQKIGDRSLKRS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
            RR       SLK S     L+G+++  K L+      ++  L M      +  P A   
Sbjct: 108 YRRQPGANGPSLKPSSIATYLAGVRALYKALE----WADAATLPMGVRAPRDPTP-AYER 162

Query: 132 KQAL--TLVDNVLLHTSHETKWIDARNSAI-LYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           + AL  +L  ++L H   ET     R   I + L+   GLRISE + L  Q+I   +  L
Sbjct: 163 RPALPVSLYRHLLAHL--ETGEPHHRRDRIAVRLMAEAGLRISEVVHLQVQDIHLAERLL 220

Query: 189 RIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL--------- 238
            ++ GKG K R VPL  S+   + E  D       L I+L       G+ L         
Sbjct: 221 EVKRGKGSKSRSVPLSKSL---VAELQDW------LRIRLAHAAAGEGRVLVNLGGRKAD 271

Query: 239 NPGVFQRYIRQL--RRY--LGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
             G+  R +R++  R Y  LG P   + AH LRH+  T       DL +   +LGH  ++
Sbjct: 272 GRGMTVRGLREILNRHYRTLGFPARYSGAHLLRHTAGTRFYQVSRDLHATARLLGHSNIN 331

Query: 294 TTQIYTNVNSKNGGDWMMEIYDQ 316
           T+ IY  ++ +     + E+ D+
Sbjct: 332 TSAIYAKMDLQG----LFEVVDK 350


>gi|157149457|ref|YP_001451484.1| resolvase [Escherichia coli E24377A]
 gi|188574267|ref|YP_001919382.1| resolvase [Escherichia coli 53638]
 gi|157076624|gb|ABV16335.1| resolvase [Escherichia coli E24377A]
 gi|188501442|gb|ACD54576.1| resolvase [Escherichia coli 53638]
          Length = 277

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 40/182 (21%)

Query: 153 DARNSAILYLLYGCGLRISEALSLT-------PQNIMDDQSTL------------RIQGK 193
           D R   +L  L+  G RI+EAL+LT       P       +TL            R+   
Sbjct: 73  DLRRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRMPAG 132

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR 251
               R+VPL  +   + L+        +   +++P+ R  +  G+     +++   R +R
Sbjct: 133 QQTHRLVPLSDTWYVSQLQ-------TMVATLKIPMERRNKRTGRTEKARIWEVTDRTVR 185

Query: 252 RYLG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            ++G              +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT
Sbjct: 186 TWIGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYT 245

Query: 300 NV 301
            V
Sbjct: 246 KV 247


>gi|295840995|dbj|BAJ06873.1| integron integrase intI [uncultured bacterium]
          Length = 423

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 97/243 (39%), Gaps = 69/243 (28%)

Query: 91  SLSGIKSFLKYLK-KRKIT--TESNILNM-----RNL--------------KKSNSLPRA 128
           S S I  FL+YL  KRK++  T++  LN      RN+              KK   LP  
Sbjct: 191 SESHISYFLEYLVIKRKVSSSTQAQALNALVYFYRNILEIKLSENIQFARSKKPKRLPVV 250

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L++ +      + L    H   ++   N     LLYGCG+R+ E + L   +I  D   L
Sbjct: 251 LSQAEI-----SKLFSAMHNPTFLLMAN-----LLYGCGMRLMECVRLRVLDIDFDYQQL 300

Query: 189 RIQG-KGDKIRIVPL-----------LPSVRK-----------------AILEYYDLCPF 219
            I+G KG K R+ P+           L  VR+                 A+   Y     
Sbjct: 301 LIRGAKGKKDRVAPIPAKLVTPLKSHLIWVRERHDEDLAHGFGCVYLPDALARKYPNAER 360

Query: 220 DLNLNIQLPLFR--------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           +       P  R         IR   ++    QR+I++   + GL    + HTLRHSFAT
Sbjct: 361 EFRWQFIFPSVRVSADPRTGEIRRHHIHQSGLQRHIKRSADHCGLYKKVSCHTLRHSFAT 420

Query: 272 HLL 274
           HLL
Sbjct: 421 HLL 423


>gi|288800951|ref|ZP_06406408.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332412|gb|EFC70893.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 383

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 82/185 (44%), Gaps = 30/185 (16%)

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTL 188
           E+ ALT  D   L +    + +D  N   L  L GC  GL  S+   L     MDD  TL
Sbjct: 163 ERNALTSDDLHKLLSYRPHRSVD--NHCRLIFLLGCFTGLAFSDLKKLR----MDDVYTL 216

Query: 189 R--------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                     + K     IVPLLP   + +    D     L       LFR     P N 
Sbjct: 217 DDGRRYISLCRTKTQNRSIVPLLPIAEEILTIVNDGRKEGL-------LFREF---PTN- 265

Query: 241 GVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQI 297
             F R IR +    GLP  T  T+HT RH+FAT + L NG  + ++  +LGH  +STT++
Sbjct: 266 SHFNRKIRDIIIKAGLPSHTEATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEL 325

Query: 298 YTNVN 302
           Y  V+
Sbjct: 326 YAKVS 330


>gi|170761597|ref|YP_001788677.1| phage integrase family site specific recombinase [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169408586|gb|ACA56997.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 199

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 91/196 (46%), Gaps = 12/196 (6%)

Query: 122 SNSLPRALNEKQALTLVDNVLL-HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           SN+  + L +++A+ L + ++    SH       R+ A+  + Y CGLR SE   +   +
Sbjct: 5   SNNKMKYLTQQEAIRLFNAIIFSDNSHA-----VRDLALFRVAYRCGLRASEISLIKLDD 59

Query: 181 IMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
              D+  L  +  KG     + L  + +KA+  Y  +  + ++ N    LF+  +  P++
Sbjct: 60  YNVDKGDLYCKRLKGSNNNTIRLDVTTKKALDTY--IRDYKISCN-SGTLFKSQKNNPIS 116

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAH--TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
                  +++  +   +   +  H  TL+H+ A HL  +  D++ +Q  LGH  +S T+I
Sbjct: 117 RQTLDYLMKKYCKIANISDKSKHHFHTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEI 176

Query: 298 YTNVNSKNGGDWMMEI 313
           Y    +K      M++
Sbjct: 177 YFQFTTKQQEKMYMKL 192


>gi|57505077|ref|ZP_00371025.1| site-specific recombinase XerC, putative [Campylobacter coli
           RM2228]
 gi|57019162|gb|EAL55874.1| site-specific recombinase XerC, putative [Campylobacter coli
           RM2228]
          Length = 312

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 86/189 (45%), Gaps = 21/189 (11%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTP 178
           +KS      LNE + + L +NVL     + +  ++ RNS ++ L+   GLRISEAL++  
Sbjct: 122 EKSEEKLNYLNENEIIRL-NNVLEKEKAKKEVYNSFRNSLLIKLMLYGGLRISEALNVKL 180

Query: 179 ---QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
              + + D+   + I GKG K +   +        LEY     F  N+     + +   G
Sbjct: 181 CDFEEVDDEILKISIIGKGGKEQFAFIKKEEVDDELEY-----FKENIQDSDYIMQTSTG 235

Query: 236 KPLNPG-----VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
           K LN       V   Y + L    GL      H LRH+ A  L + G +L  IQ IL H 
Sbjct: 236 KHLNRSNAFLIVNNIYAKALISKKGL------HLLRHTLAMRLTAKGTNLVVIQKILRHA 289

Query: 291 RLSTTQIYT 299
            L+TT IY 
Sbjct: 290 NLNTTTIYA 298


>gi|169344273|ref|ZP_02865254.1| tyrosine recombinase [Clostridium perfringens C str. JGS1495]
 gi|169297604|gb|EDS79705.1| tyrosine recombinase [Clostridium perfringens C str. JGS1495]
          Length = 236

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 94/196 (47%), Gaps = 31/196 (15%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT--EEKITIQTIRQLSYTEIR----- 72
           N+L+N+   +G S  T++ Y  D   F  FL  Y   E  I ++ I ++  +++      
Sbjct: 48  NYLENV---KGKSLNTVKGYSVDLGLFFKFLKVYKGLENNIELEKIEEVEISDLGDNFIK 104

Query: 73  -----------AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLK 120
                      AF+ K R      R+  R ++ +KSF K+L  + K+  E+  + + + K
Sbjct: 105 DITLSDIYAFLAFLEKVRNNSAYARA--RKVATLKSFFKFLNSKIKLIDENPTVELESPK 162

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
            +   P  L   Q++T++++  +   ++  +   R+  IL L   CG+R+SE  ++  + 
Sbjct: 163 INKRHPVYLTLDQSITVLNS--MDKGNKNYY---RDYCILTLFLNCGMRLSELCNIEIEK 217

Query: 181 IMDDQSTLRIQGKGDK 196
           I  D  TL I GKG+K
Sbjct: 218 IKGD--TLTIIGKGNK 231


>gi|94968162|ref|YP_590210.1| phage integrase [Candidatus Koribacter versatilis Ellin345]
 gi|94550212|gb|ABF40136.1| phage integrase [Candidatus Koribacter versatilis Ellin345]
          Length = 454

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 10/170 (5%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDD---QSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
           ++ LL   GLRI EA+ +   +   D    S     GK D  +      S RK  +    
Sbjct: 281 LVLLLAVTGLRIGEAIGIKWSDFDGDILHVSRTIYDGKADSTKTAS---SNRKLPIPAAL 337

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPG-VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           +    +  + +  +F    G P+NPG   +RY+R   + LG+ L T  H  RH+ AT LL
Sbjct: 338 ISRMRMLGDGEF-IFHSRAGSPVNPGNALKRYLRPAAKALGIRL-TGWHDFRHTQATQLL 395

Query: 275 SNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            +G   + +  ILGH  +  T  +Y +  ++     +  I DQ  P++T+
Sbjct: 396 RSGSSPKVVSGILGHSDVGITLNVYEHTETEIFRAPLERIADQLLPTVTK 445


>gi|319788864|ref|YP_004090179.1| integrase family protein [Ruminococcus albus 7]
 gi|315450731|gb|ADU24293.1| integrase family protein [Ruminococcus albus 7]
          Length = 359

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 92/214 (42%), Gaps = 42/214 (19%)

Query: 128 ALNEKQALTLVDNVLL--HTSHETKWIDAR-------------NSAIL--YLLYGCGLRI 170
           A  E   L   DNV++   T  ET+ +  +             N+A L   L    GLRI
Sbjct: 140 AQKEYHILNPFDNVIMPKSTKSETRLLTKKEQKKLKEYLKSNVNTATLGISLAISMGLRI 199

Query: 171 SEALSLTPQNIMDDQSTL---------RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
            E   LT Q+I     TL         R++G+  K +IV L P  + +  E     P   
Sbjct: 200 GEICGLTWQDIDFKCRTLTVRRTVQRIRVKGEAKKTKIVILPPKSKSSFRE----IPIPT 255

Query: 222 NLNIQLPLFRGI--------RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
           ++   L   R            +P  P +      ++ + LGLP S   H+LRH+ A++ 
Sbjct: 256 SVFAMLKNLRSTPEHYILSDSTEPKEPRMMYYDYVEILKELGLP-SVKFHSLRHAAASNA 314

Query: 274 LSNGGDLRSIQSILGHFRLSTTQ---IYTNVNSK 304
           +  G D++++  +LGH R+  T    +++N++ K
Sbjct: 315 IEAGFDVKTLSEVLGHSRIEMTMNLYVHSNMDRK 348


>gi|265753988|ref|ZP_06089343.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|333029238|ref|ZP_08457299.1| integrase family protein [Bacteroides coprosuis DSM 18011]
 gi|263235702|gb|EEZ21226.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|332739835|gb|EGJ70317.1| integrase family protein [Bacteroides coprosuis DSM 18011]
          Length = 390

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 18/149 (12%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
            ++ C  GLR+S+   L P +I          GKG+ I +   +    K ++      P 
Sbjct: 240 FIFACFTGLRLSDMYKLAPIHIFKTPD-----GKGEYIDME--MQKTEKPVI-----IPL 287

Query: 220 DLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
                  LP  +GI       P    V  R +R+     G+    + H  RH+F T +L+
Sbjct: 288 SEEAKRWLPKPKGITTPFFDIPTTQTVIGRALRKWAEAAGVEKHISFHCSRHTFGTMMLT 347

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            G DL +   ++GH  + TT+IY  +  K
Sbjct: 348 LGADLFTTSKLMGHTNIQTTEIYAKIVDK 376


>gi|83404870|ref|YP_424884.1| resolvase [Escherichia coli]
 gi|299836151|ref|YP_003717720.1| putative resolvase [Escherichia coli ETEC 1392/75]
 gi|46949067|gb|AAT07421.1| ResA [Escherichia coli]
 gi|83308595|emb|CAI79580.1| resolvase [Escherichia coli]
 gi|297374500|emb|CBL93575.1| putative resolvase [Escherichia coli ETEC 1392/75]
          Length = 261

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 36/180 (20%)

Query: 153 DARNSAILYLLYGCGLRISEALSLT-------PQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           D R   +L  L+  G RI+EAL+LT       P       +TL+ Q      R    +P+
Sbjct: 57  DLRRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLK-QRTEKAARTAGRMPA 115

Query: 206 VRKAILEYYDLCPFD----------LNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRY 253
            ++     + L P            +   +++P+ R  +  G+     +++   R +R +
Sbjct: 116 GQQT----HRLVPLSDTWYVSQLQTMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTW 171

Query: 254 LG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +G              +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 172 IGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|56419057|ref|YP_146375.1| phage integrase family site specific recombinase [Geobacillus
           kaustophilus HTA426]
 gi|56378899|dbj|BAD74807.1| site-specific recombinase (phage integrase family) [Geobacillus
           kaustophilus HTA426]
          Length = 180

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 10/160 (6%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           RN  +  L    GLRIS+ L L  ++++     LR + K  K + + + PS+RK ++EY 
Sbjct: 26  RNYILFVLGINTGLRISDLLQLKKEDLLQTHLKLR-EKKTRKEKRIRIPPSIRKELIEYA 84

Query: 215 DLCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                   L      FR  +G  +P++     R +R+   Y+ L    T HTLR +F  H
Sbjct: 85  K------TLKDGEYAFRSRQGGNRPIDRSTAYRILREAAEYVSLDEVGT-HTLRKTFGYH 137

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                 D+  +Q +  H     T  Y  VN       M++
Sbjct: 138 FYQQTKDVAMLQELFNHSSPHITLKYIGVNQDAMDKAMLK 177


>gi|299069268|emb|CBJ40533.1| putative integrase/recombinase protein [Ralstonia solanacearum
           CMR15]
          Length = 566

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 121/302 (40%), Gaps = 40/302 (13%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           IERG  LS LT +    D   +  FL   +  +  +   R  +  + R F     T  + 
Sbjct: 256 IERGRPLSSLTTE----DAIAYRGFLRRPSPHERWVGPARPRASADWRPF-----TDGLS 306

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSL--PRALNEKQ-AL--TL 137
            RS+  SLS + +  ++L +++    +    + +R   ++ +L    A +E + AL  TL
Sbjct: 307 ARSIAYSLSVLGAMFRWLIQQRYALANPFAGIKVRGGGRTAALDASHAFSEGEWALVRTL 366

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKG 194
            D +      E      R   +L   Y  GLR SE ++     I  D+     L + GKG
Sbjct: 367 ADGLEWSYGWEAP-AAQRLRFVLDFAYATGLRASELITARLGGIEADRQGDHWLSLIGKG 425

Query: 195 DKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            +   V L P  R A+  Y     L       N Q PL   +   P       R    +R
Sbjct: 426 SRAGKVALPPLARTALDRYLVERGLPVTQARWNPQTPLIGALGLDPDGGITGSRLWSVMR 485

Query: 252 RYLGLPLS---------------TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           R+  +                   + H +RH+ A+H L+ G +L +++  L H  +STT 
Sbjct: 486 RFFRVAADLIEHDHTALAEKLRKASPHWMRHTHASHALARGAELTTVRDNLRHASISTTS 545

Query: 297 IY 298
           IY
Sbjct: 546 IY 547


>gi|289751271|ref|ZP_06510649.1| integrase [Mycobacterium tuberculosis T92]
 gi|289691858|gb|EFD59287.1| integrase [Mycobacterium tuberculosis T92]
          Length = 166

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 62/147 (42%), Gaps = 17/147 (11%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           D R   ++ L    GLR +EA      ++MD    L + GKG K RIVP        I +
Sbjct: 22  DRRTELMIRLAGEAGLRRAEAAQAHTGDLMDG-GLLLVHGKGGKRRIVP--------ISD 72

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           Y      D       P   G  G      V +   R L      P   T HTLRH +AT 
Sbjct: 73  YLAALIRDTPHGYLFP--NGTGGHLTAEHVGKLVSRAL------PGDATMHTLRHRYATR 124

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYT 299
                 +LR++Q +LGH  + TT+ YT
Sbjct: 125 AYRGSHNLRAVQQLLGHASIVTTERYT 151


>gi|262381530|ref|ZP_06074668.1| transposase [Bacteroides sp. 2_1_33B]
 gi|262296707|gb|EEY84637.1| transposase [Bacteroides sp. 2_1_33B]
          Length = 403

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 22/148 (14%)

Query: 162 LLYGC--GLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVP--LLPSVRKAILEYYDL 216
            ++ C  GL   +   LTP+NI +     L I  K  K  +     L  + K+IL+ YD 
Sbjct: 249 FIFSCYTGLSYVDVCELTPENIKLSFDGNLWIIKKRHKTSVTSNIRLLDIPKSILQKYDG 308

Query: 217 CPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                    +LP   L   I  + +N      Y++++    G+    T H  RHSFAT  
Sbjct: 309 ---------KLPNGKLLPVISNQKMND-----YLKEIATVCGINKRITFHVARHSFATLS 354

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +S G  + S+  +LGH  + TTQIY  +
Sbjct: 355 ISYGVPIESVSKMLGHTNIRTTQIYAKI 382


>gi|326626310|gb|EGE32654.1| resolvase [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 9]
          Length = 260

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 94/223 (42%), Gaps = 48/223 (21%)

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL------------LYGCGLR 169
           S  LP A++   AL L    + H  +    +    SA+L+             L+  G R
Sbjct: 15  SALLPVAIDYPAALALRQMAMQHDDYPKYLLAPEVSALLHYVPDLHRRMLLATLWNTGAR 74

Query: 170 ISEALSLT-------PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           I+EAL+LT       P       +TL+ Q      R    +PS  +     + L P   N
Sbjct: 75  INEALALTRGDFSLAPPYPFVQLATLK-QRAEKAARTAGRMPSGSQP----HRLVPLSDN 129

Query: 223 ----------LNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG------------LPL 258
                       +++PL R  R  G+     +++   R +R ++G              +
Sbjct: 130 QYVSELQMMVATLKIPLERRNRRTGRTEKARLWEITDRTVRTWIGEEVEAAAADDVTFSV 189

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             T HT RHS+A H+L  G  L+ +Q+++GH  +S+T++YT V
Sbjct: 190 PVTPHTFRHSYAMHMLYAGIPLKVLQALMGHKSVSSTEVYTKV 232


>gi|325287290|ref|YP_004263080.1| integrase family protein [Cellulophaga lytica DSM 7489]
 gi|324322744|gb|ADY30209.1| integrase family protein [Cellulophaga lytica DSM 7489]
          Length = 423

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 75/152 (49%), Gaps = 26/152 (17%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQG---------KGDKIRIVPLLPSVRKAI 210
            ++ C  G+   + ++LTP +++     L I G         K +    VPLL      +
Sbjct: 253 FVFSCYTGISYVDIMNLTPNHLV-----LGIDGGYWIMTKRQKTNTTVKVPLLGQALDIV 307

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            +Y D  P     N  LP+   +  + LN      +++++  ++G+  + T H  RH+FA
Sbjct: 308 NKYKD-HPVTAVNNSLLPV---LTNEKLN-----MFLKEVANFVGINKNLTFHMARHTFA 358

Query: 271 THL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T + LSNG  + ++  +LGH +++TTQIY  V
Sbjct: 359 TTVTLSNGVPIETVSKLLGHSKIATTQIYARV 390


>gi|107026246|ref|YP_623757.1| phage integrase [Burkholderia cenocepacia AU 1054]
 gi|116692567|ref|YP_838100.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
 gi|105895620|gb|ABF78784.1| phage integrase [Burkholderia cenocepacia AU 1054]
 gi|116650567|gb|ABK11207.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
          Length = 398

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 77/192 (40%), Gaps = 34/192 (17%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSVR 207
           R   +  LLY  GLRI+EA   T             ++  L + GKG + R+VP    + 
Sbjct: 208 RARWLFTLLYLGGLRITEAADTTMGQFFCRRDANGHERWWLDVTGKGGRQRLVPATDEMM 267

Query: 208 KAILEY---YDLCPFDLN---LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL--- 258
             +  Y   + L    L+     + LP   G   KPL      R ++Q+ R+    L   
Sbjct: 268 AELTRYRRTHGLPALPLDGEPTPLVLPF--GQARKPLTRAALHRIVKQVFRHAAGRLRAN 325

Query: 259 ------------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
                         +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +    
Sbjct: 326 GETGEQAARVLEQASAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHADD--- 382

Query: 307 GDWMMEIYDQTH 318
            DW     ++ H
Sbjct: 383 -DWRHRETEEKH 393


>gi|94985803|ref|YP_605167.1| phage integrase [Deinococcus geothermalis DSM 11300]
 gi|94556084|gb|ABF45998.1| phage integrase [Deinococcus geothermalis DSM 11300]
          Length = 285

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 95/227 (41%), Gaps = 29/227 (12%)

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R  + ++ F  +  +R++      L++         PR L  ++    ++ +      E 
Sbjct: 67  RKQTALERFCHWALQRELLDRDPTLHLERPSLPPPHPRGLRREE----IERIFAVIPAE- 121

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLL-PSV 206
                R++ +  L++  GLRI EAL +  +++        L + GKG + R V L  P +
Sbjct: 122 ---QVRDALLFRLVFETGLRIGEALGVHVEDLDLTRGDEHLTVLGKGSRRRTVLLDDPKL 178

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGI---RGKPLNPGVFQRYIRQLRRYLGLP----LS 259
              +  Y     +        PLF+     RG PL      RY     R+ G      ++
Sbjct: 179 VNMLRRYLRTLGY-----THGPLFQATKNGRGGPL------RYQSVQERWQGYAERAGVT 227

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
            T H LRHS AT L++ G  L +I+  LGH  + TT  Y  V+ +  
Sbjct: 228 CTLHQLRHSHATELVNGGVSLATIRKRLGHQHIQTTLRYAEVSDQTA 274


>gi|227524410|ref|ZP_03954459.1| phage integrase family site specific recombinase [Lactobacillus
           hilgardii ATCC 8290]
 gi|227088641|gb|EEI23953.1| phage integrase family site specific recombinase [Lactobacillus
           hilgardii ATCC 8290]
          Length = 401

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 3/71 (4%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G P+ P   +    ++++ LG P +   H+LRH+ AT LL +G +++ IQ+ LGH R++T
Sbjct: 313 GIPVTPNTIKYQCDRIQKELGFPFN--FHSLRHTHATMLLEHGANIKDIQARLGHSRIAT 370

Query: 295 T-QIYTNVNSK 304
           T   Y++V  K
Sbjct: 371 TMDTYSHVTHK 381


>gi|219558655|ref|ZP_03537731.1| integrase [Mycobacterium tuberculosis T17]
 gi|260187668|ref|ZP_05765142.1| integrase [Mycobacterium tuberculosis CPHL_A]
 gi|260201779|ref|ZP_05769270.1| integrase [Mycobacterium tuberculosis T46]
 gi|289444189|ref|ZP_06433933.1| integrase [Mycobacterium tuberculosis T46]
 gi|289448303|ref|ZP_06438047.1| integrase [Mycobacterium tuberculosis CPHL_A]
 gi|289570821|ref|ZP_06451048.1| integrase [Mycobacterium tuberculosis T17]
 gi|289417108|gb|EFD14348.1| integrase [Mycobacterium tuberculosis T46]
 gi|289421261|gb|EFD18462.1| integrase [Mycobacterium tuberculosis CPHL_A]
 gi|289544575|gb|EFD48223.1| integrase [Mycobacterium tuberculosis T17]
          Length = 332

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 73/178 (41%), Gaps = 19/178 (10%)

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           ++SLP+    KQ      + +   +      D R   ++ L    GLR +EA      ++
Sbjct: 159 ADSLPKVRCPKQPPRPAGDDVWQAALAK--ADRRTELMIRLAGEAGLRRAEAAQAHTGDL 216

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
           MD    L + GKG K RIVP        I +Y      D       P   G  G      
Sbjct: 217 MDG-GLLLVHGKGGKRRIVP--------ISDYLAALIRDTPHGYLFP--NGTGGHLTAEH 265

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           V +   R       LP   T HTLRH +AT       +LR++Q +LGH  + TT+ YT
Sbjct: 266 VGKLVSR------ALPGDATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYT 317


>gi|302595333|ref|YP_003829048.1| resolvase [Escherichia coli]
 gi|302310069|gb|ADL13942.1| TnpR [Escherichia coli]
          Length = 311

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 36/180 (20%)

Query: 153 DARNSAILYLLYGCGLRISEALSLT-------PQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           D R   +L  L+  G RI+EAL+LT       P       +TL+ Q      R    +P+
Sbjct: 108 DLRRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLK-QRTEKAARTAGRMPA 166

Query: 206 VRKAILEYYDLCPFD----------LNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRY 253
            ++     + L P            +   +++P+ R  +  G+     +++   R +R +
Sbjct: 167 GQQT----HRLVPLSDTWYVSQLQTMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTW 222

Query: 254 LG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +G              +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 223 IGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 282


>gi|217969499|ref|YP_002354733.1| integrase [Thauera sp. MZ1T]
 gi|217506826|gb|ACK53837.1| integrase family protein [Thauera sp. MZ1T]
          Length = 190

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 11/153 (7%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-------IQGKGDKIRIVPLLPSV 206
           ARN A++ + +  GLR  E  +L   +++D    ++        Q KG + R+V L   +
Sbjct: 26  ARNRALVLMSHWAGLRAKEIAALRCCDVVDGAGRMKEEVLLSVDQTKGKRGRVVYLGTKI 85

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           RK +  Y   CP   + +   P  +   RG   N     ++  +L +  G+    ++H+ 
Sbjct: 86  RKELATYLRACPPRSDASPLFPTQKAPTRGFTAN--TMAQFFHKLYKEAGIE-GASSHSG 142

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           R S+ T L   G  +  ++++ GH  +STT +Y
Sbjct: 143 RRSYLTTLADKGTSIHILKTLAGHQSISTTAVY 175


>gi|209916841|ref|YP_002291161.1| resolvase [Escherichia coli SE11]
 gi|209915267|dbj|BAG80339.1| resolvase [Escherichia coli SE11]
          Length = 268

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 36/180 (20%)

Query: 153 DARNSAILYLLYGCGLRISEALSLT-------PQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           D R   +L  L+  G RI+EAL+LT       P       +TL+ Q      R    +P+
Sbjct: 66  DLRRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLK-QRTEKAARTAGRMPA 124

Query: 206 VRKAILEYYDLCPFD----------LNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRY 253
            ++     + L P            +   +++P+ R  +  G+     +++   R +R +
Sbjct: 125 GQQT----HRLVPLSDAWYVSQLQTMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTW 180

Query: 254 LG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +G              +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 181 IGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240


>gi|42526683|ref|NP_971781.1| phage integrase family site specific recombinase [Treponema
           denticola ATCC 35405]
 gi|41816876|gb|AAS11662.1| site-specific recombinase, phage integrase family [Treponema
           denticola ATCC 35405]
          Length = 354

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 9/146 (6%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTL-RIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
            L+ C  GLRIS+  SL    +  ++ TL +IQ    K +    LP   +AI   + L  
Sbjct: 198 FLFACCTGLRISDLKSLKWGGVSFEKKTLTKIQ---QKTKRAVYLPIKDEAIAFLHLLAE 254

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
            + N   +  +F  +     N     +Y+ +  +  G+      H  RH+ AT LL +G 
Sbjct: 255 ENPNRTDEDFIFPHVATTGTN---MNQYLIEWGKRAGVRQKIGWHLARHTHATLLLESGA 311

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSK 304
           DL ++Q +LGH ++STT  YT V  +
Sbjct: 312 DLYTVQKLLGHTKISTTAQYTQVTDR 337


>gi|291515442|emb|CBK64652.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 409

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 2/64 (3%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV-NSK 304
           +R + R+ GL  + T HT RH+FAT + L+ G  L ++  +LGH  ++TTQIY  + N K
Sbjct: 330 LRHVARHAGLSFNPTTHTGRHTFATTVTLTQGVPLETVSKMLGHKHITTTQIYAKITNDK 389

Query: 305 NGGD 308
            G D
Sbjct: 390 IGRD 393


>gi|242241242|ref|YP_002989423.1| integrase family protein [Dickeya dadantii Ech703]
 gi|242133299|gb|ACS87601.1| integrase family protein [Dickeya dadantii Ech703]
          Length = 327

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 93/231 (40%), Gaps = 30/231 (12%)

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           I  F ++R    I   ++ R +  +      L K +I T  N L          LP    
Sbjct: 107 ILEFRTRRLYDGISSSTVNRDIYRLSGMFSALIKLEIYTGENPLK--------ELPPLPE 158

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           ++  +T +    +    +T   D    A+L L    G R  EA +L  + +M ++ T   
Sbjct: 159 KQPTVTFLTESEIARLLDTMEGDQYRLAVLCL--STGARWGEASTLRAEQVMHNRVTF-T 215

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           + K  K R +P+   V + I        F ++ +      + +  KP             
Sbjct: 216 ETKNGKNRTIPISEEVTRIIKTRETGKLFKVDYSAFCEQIKAV--KP------------- 260

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                +P    +H LRH+FA+H + NGG+L ++Q ILGH  +  T  Y ++
Sbjct: 261 ----DIPKGQASHILRHTFASHFVMNGGNLVALQQILGHASIQQTMTYAHL 307


>gi|320160972|ref|YP_004174196.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
 gi|319994825|dbj|BAJ63596.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
          Length = 337

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 112/245 (45%), Gaps = 30/245 (12%)

Query: 92  LSGIKSFLKYLKKRKITTESNI------LNMRNLKKSNSLPRALNE------KQALTLVD 139
           L+ +K+F +YL   K+  + N+      +  R+ K    LP+   +      ++  + + 
Sbjct: 89  LTAVKNFYEYLAAEKLA-DINLPRVKLLIRQRSRKPGQRLPQFPKDYIEILLEKMQSFIP 147

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           +  +  +   +++  R+ A L  L   GLR+ EA +L   ++  ++    I GKG++  I
Sbjct: 148 DATMDETERIRFL--RDRAFLLTLADTGLRVHEACNLRRGDMDWNEGKALIIGKGNREAI 205

Query: 200 VPLLPSVRKAILEYY-DLCPFDLNLN---IQLPLF------RGIRGKPLNPGVFQRYIRQ 249
           V        A+ EY       D +       LPLF       G + KP+     +  ++Q
Sbjct: 206 VRFSTRTIHALKEYLTQRAALDSSSGKPLSSLPLFARHDKGSGKKIKPITTTTGRNIVKQ 265

Query: 250 -LRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK-- 304
            ++ +L   + L  T H+ RH F T +L + G+L+  Q +  H  ++ TQ Y +++++  
Sbjct: 266 RVKEFLDEEISLEITPHSFRHYFVTRVLVSSGNLKLAQELARHRNIAVTQRYAHLSNEEL 325

Query: 305 NGGDW 309
           + G W
Sbjct: 326 DQGYW 330


>gi|325856041|ref|ZP_08171930.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483713|gb|EGC86677.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 407

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 14/147 (9%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            ++ C  GL   +  +LTP+++  MDD+  +  + +   +    LL  + K I+  Y   
Sbjct: 249 FIFSCFTGLSYIDVANLTPEHLVNMDDKQWIMTKRQKTNVESNILLLDIPKQIIAKYSNK 308

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            +         LF  +  + +N      Y++++     +  + T H  RH+FAT  LS G
Sbjct: 309 TYR-----DSKLFPVLSNQKMNA-----YLKEIADICDIGKNLTFHMARHTFATMSLSKG 358

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSK 304
             + S+  +LGH  + TTQIY  + +K
Sbjct: 359 VPMESVSKMLGHTNIKTTQIYARITNK 385


>gi|224825788|ref|ZP_03698892.1| integrase family protein [Lutiella nitroferrum 2002]
 gi|224602012|gb|EEG08191.1| integrase family protein [Lutiella nitroferrum 2002]
          Length = 342

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 29/189 (15%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQG--KGDKIRIVPLLPSVR- 207
           R++A+L LL GCGLR+S   +L   N    ++D +  L ++   KG K R++P+      
Sbjct: 132 RDAAMLALLLGCGLRVSGLAALNEGNLTTQVVDGEPRLALKPIEKGGKERLIPVPREADL 191

Query: 208 --KAILEYYDLCPFDLNL------------NIQLPL--FRGIRGKPLNPGVFQRYIRQLR 251
             +  +E+ DL   D +             N + P   + G R +    GVF   I++  
Sbjct: 192 LLRVYMEHPDLEGIDRSTPSGDRVLFITTRNRRCPAHEYYGERRRFSTRGVFA-MIQRHG 250

Query: 252 RYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           +  G+P      H LRH F T L     DL   Q+++GH    +T IYT++  +     +
Sbjct: 251 KAAGIPEEQLNPHALRHLFGTELAEGDIDLLERQNLMGHKDPKSTAIYTHLAFRK----L 306

Query: 311 MEIYDQTHP 319
            +  DQ +P
Sbjct: 307 TKSVDQANP 315


>gi|299141859|ref|ZP_07034994.1| mobilizable transposon protein, int protein [Prevotella oris C735]
 gi|298576710|gb|EFI48581.1| mobilizable transposon protein, int protein [Prevotella oris C735]
          Length = 418

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 34/63 (53%)

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           NP    R +R      G+    + H  RH+FAT  L+NG D+ ++  +LGH  + TTQ+Y
Sbjct: 335 NPSWISRSLRAWIEKAGIQKHLSFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVY 394

Query: 299 TNV 301
             V
Sbjct: 395 AKV 397


>gi|260880928|ref|ZP_05403159.2| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Mitsuokella multacida DSM 20544]
 gi|260849940|gb|EEX69947.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Mitsuokella multacida DSM 20544]
          Length = 361

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 108/246 (43%), Gaps = 46/246 (18%)

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKI-------TTESNILNMRNLKKSNSLPRALNEKQALT 136
            D +++   + I+S   Y K + I       +   ++ + R +K    LP ++NE Q + 
Sbjct: 115 ADTTMRTRSTKIQSLFLYAKHKGIIEHVPEFSARGSMFHTRTMK---ILP-SVNEIQHI- 169

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI------ 190
            ++ V  H+S+   +       ++ L+   G+R+ EA  L  +NI     T+ I      
Sbjct: 170 -LEYVREHSSYPYLY------HMMLLIVSSGIRVGEACVLQWKNIDMANDTISILNTVTR 222

Query: 191 ---------QGKGDK-IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                    + K  K IRI+P+  SV + I E     P+         +F G +   + P
Sbjct: 223 GQTNFELSDRAKTAKSIRIIPVEYSVLEIINEIPKESPY---------VFFGRKKSFVPP 273

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR-LSTTQIYT 299
               R  R+L   LG P     + LRH  AT LL+NG D++++   LGH   ++T  +YT
Sbjct: 274 ATINRNARKLFDALGYP-KLRMYDLRHFHATQLLANGVDIKTVSHRLGHTSPMTTLNVYT 332

Query: 300 NVNSKN 305
           +    N
Sbjct: 333 HYVEDN 338


>gi|229015025|ref|ZP_04172100.1| Tyrosine recombinase [Bacillus mycoides DSM 2048]
 gi|228746267|gb|EEL96195.1| Tyrosine recombinase [Bacillus mycoides DSM 2048]
          Length = 358

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 126/304 (41%), Gaps = 42/304 (13%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK---------RRTQKIGD 85
           TL +Y  D R F  +L   +E+ I  + I+ +S++++     K         +  Q + +
Sbjct: 43  TLLNYVYDFRVFFNWLL--SEQIIEFKPIKDISFSDLENLKKKDVENFMRFLKLQQNMQN 100

Query: 86  RSLKRSLSGIKSFLKYL------------------KKRKITTESNILNMRNLKKSNSLPR 127
            S+ R +S +KS  KYL                   K +I  +   LN R  +  + +  
Sbjct: 101 SSVNRKISALKSLFKYLTSLSENDDGECYFYRNVMAKIEIHKDKETLNARAKRMRSKIFH 160

Query: 128 ALNEKQALTLV--DNVLLHTSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIM 182
             ++++ L  +  ++    T H+  +      R+ AIL L  G G+R+SE   L  ++I 
Sbjct: 161 NDDDQEFLNYIKYEHEKSLTKHQLFYFLRDKDRDVAILSLFLGSGIRVSELADLRMEDIN 220

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKP 237
             +  + +  KG+K   V + P     + +Y ++      P     N+ L  ++    +P
Sbjct: 221 LKERLIDVIRKGNKEDSVWITPIALNDLEKYMEIRDKKYAPGKELKNVFLSKYKHT-AQP 279

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+    Q  + +  +  G  +S   H LRH+ A  L     D   +   LGH    T  +
Sbjct: 280 LSVRAIQDIVEKYTKAYGKRMS--PHKLRHTLANKLYMEEKDSLQVMQQLGHTSQDTALL 337

Query: 298 YTNV 301
           YT +
Sbjct: 338 YTQL 341


>gi|239828168|ref|YP_002950792.1| integrase [Geobacillus sp. WCH70]
 gi|239808461|gb|ACS25526.1| integrase family protein [Geobacillus sp. WCH70]
          Length = 329

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/304 (21%), Positives = 131/304 (43%), Gaps = 25/304 (8%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           + + F++  E+  +L++ EI R     T+Q Y     +  +F     E+ I +   R   
Sbjct: 24  DAIDFQIALEK--FLEDCEI-RNCRPQTIQYYR---NELSVFYKILREQGIEVNIYRMTP 77

Query: 68  YTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESN--ILNMRNLK-KSN 123
               +  I   + QK     ++   L  +++F  +L++ KI ++       ++ LK +  
Sbjct: 78  EIIKQNVILYMKNQKNCKTVTINTRLRALRAFFNFLEREKIISKKQNPFHEIKLLKDRKK 137

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           ++P    E+       ++L    +   +   R+  I+ LL   G+R SE + +   +I  
Sbjct: 138 AVPTFTKEE------IHILFKQPNLRTFTGVRDLTIMMLLLETGIRASECVGIRLGDIDF 191

Query: 184 DQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPG 241
            +S + IQ  KG + R VP+   +++ + +Y  +    D +      LF  +   PL   
Sbjct: 192 QRSRILIQNTKGYRQRYVPIQKQMKEQLKKYLAIRGTLDHDY-----LFVSVDDTPLTKR 246

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             Q  I    +  G+    T H  RH+FA   +  G  +  +Q++LGH  +   + Y N+
Sbjct: 247 QMQAQIESYGKKCGI--HATCHKFRHTFARLSVEAGAGIFELQAVLGHSSMEMVKHYVNL 304

Query: 302 NSKN 305
            S +
Sbjct: 305 FSDD 308


>gi|10955295|ref|NP_052636.1| resolvase [Escherichia coli O157:H7 str. Sakai]
 gi|75994510|ref|YP_325624.1| resolvase [Escherichia coli O157:H7 EDL933]
 gi|149930783|ref|YP_001294712.1| w0048 [Escherichia coli]
 gi|168803077|ref|ZP_02828084.1| resolvase [Escherichia coli O157:H7 str. EC508]
 gi|208811330|ref|ZP_03253090.1| resolvase [Escherichia coli O157:H7 str. EC4206]
 gi|208817399|ref|ZP_03258428.1| resolvase [Escherichia coli O157:H7 str. EC4045]
 gi|208823403|ref|ZP_03263720.1| resolvase [Escherichia coli O157:H7 str. EC4042]
 gi|209395611|ref|YP_002268421.1| resolvase [Escherichia coli O157:H7 str. EC4115]
 gi|217329834|ref|ZP_03445909.1| resolvase [Escherichia coli O157:H7 str. TW14588]
 gi|254667484|ref|YP_003082170.1| resolvase [Escherichia coli O157:H7 str. TW14359]
 gi|261225662|ref|ZP_05939943.1| resolvase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257882|ref|ZP_05950415.1| resolvase [Escherichia coli O157:H7 str. FRIK966]
 gi|37695771|gb|AAR00433.1|AF401292_34 w0048 [Escherichia coli]
 gi|3337027|dbj|BAA31786.1| resolvase [Escherichia coli O157:H7 str. Sakai]
 gi|3822178|gb|AAC70132.1| resolvase (protein d) [Escherichia coli O157:H7]
 gi|17384578|emb|CAC79982.1| orf807 [Escherichia coli]
 gi|189375194|gb|EDU93610.1| resolvase [Escherichia coli O157:H7 str. EC508]
 gi|208729960|gb|EDZ79177.1| resolvase [Escherichia coli O157:H7 str. EC4206]
 gi|208730576|gb|EDZ79275.1| resolvase [Escherichia coli O157:H7 str. EC4045]
 gi|208736998|gb|EDZ84683.1| resolvase [Escherichia coli O157:H7 str. EC4042]
 gi|209157066|gb|ACI34500.1| resolvase [Escherichia coli O157:H7 str. EC4115]
 gi|217317065|gb|EEC25498.1| resolvase [Escherichia coli O157:H7 str. TW14588]
 gi|254595836|gb|ACT75196.1| resolvase [Escherichia coli O157:H7 str. TW14359]
          Length = 268

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 95/226 (42%), Gaps = 52/226 (23%)

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL------------LYGCGL 168
           +  SLP A++   AL L    ++H       +    SA+L+             L+  G 
Sbjct: 22  QPASLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPNLHRKMLLATLWNTGA 81

Query: 169 RISEALSLT-------PQNIMDDQSTL------------RIQGKGDKIRIVPLLPSVRKA 209
           RI+EAL+LT       P       +TL            R+       R+VPL  S   +
Sbjct: 82  RINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRMPAGQQTHRLVPLSDSWYVS 141

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG------------ 255
            L+        +   +++P+ R  R  G+     +++   R +R ++G            
Sbjct: 142 QLQ-------TMVATLKIPMERRNRRTGRTEKARIWEVTDRTVRTWIGEAVAAAAADGVT 194

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             +  T HT RHS+A H+L  G  L+ +QS++GH  +S+ ++YT V
Sbjct: 195 FSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSKEVYTKV 240


>gi|313677913|gb|ADR74174.1| putative integrase [uncultured bacterium 52B7]
          Length = 404

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 68/157 (43%), Gaps = 35/157 (22%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------GDKIRIVPL---LP 204
           A L+  Y  GLR S+   LTP+N       +R+ GK          G +IR+ PL     
Sbjct: 236 AFLFCCY-TGLRYSDFCQLTPENF------IRVNGKRWLYFKSVKTGVEIRL-PLHLLFE 287

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           S    IL+ Y             P        P N  V  + +R+L    G+    T H 
Sbjct: 288 SRALGILDRY-------------PDIGSFAALPCNSEV-NKQLRKLAGLCGIKKRITYHV 333

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            RH+ AT L+  G  + ++Q +LGH  + TTQIY+ V
Sbjct: 334 SRHTCATLLVHQGVAITTVQKLLGHTSVKTTQIYSEV 370


>gi|295133331|ref|YP_003584007.1| transposase [Zunongwangia profunda SM-A87]
 gi|294981346|gb|ADF51811.1| putative transposase [Zunongwangia profunda SM-A87]
          Length = 414

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 17/155 (10%)

Query: 162 LLYGC--GLRISEALSLTPQNI---MDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD 215
            ++ C  GL  ++A +L   N+   +D    +  +  K +    VPLL    + IL+ Y 
Sbjct: 246 FVFACYTGLAYADAKALNKNNLQIGVDGNKWIYTRRSKTNTAVRVPLLAEAER-ILKRYK 304

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
             P        LP++   +          +Y++++ + + +    + HT RH+FAT + L
Sbjct: 305 THPKIDGTEKLLPVYSNQKT--------NQYLKEIAKEVKIKKQLSFHTARHTFATTITL 356

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGD 308
           +NG  + ++  +LGH +LSTTQIY  V +SK   D
Sbjct: 357 ANGVPIETVSKLLGHTKLSTTQIYARVIDSKISND 391


>gi|283957132|ref|ZP_06374596.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|283791308|gb|EFC30113.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 1336]
          Length = 223

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 86/189 (45%), Gaps = 21/189 (11%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTP 178
           +KS      LNE + + L +NVL     + +  ++ RNS ++ L+   GLRISEAL++  
Sbjct: 33  EKSEEKLNYLNENEIIRL-NNVLEKEKAKKEVYNSFRNSLLIKLMLYGGLRISEALNVKL 91

Query: 179 ---QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
              + + D+   + I GKG K +   +        LEY     F  N+     + +   G
Sbjct: 92  CDFEEVDDEILKISIIGKGGKEQFAFIKKEEVDDELEY-----FKENIQDSDYIMQTSTG 146

Query: 236 KPLNPG-----VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
           K LN       V   Y + L    GL      H LRH+ A  L + G +L  IQ IL H 
Sbjct: 147 KHLNRSNAFLIVNNIYAKALISKKGL------HLLRHTLAMRLTAKGTNLVVIQKILRHA 200

Query: 291 RLSTTQIYT 299
            L+TT IY 
Sbjct: 201 NLNTTTIYA 209


>gi|193065925|ref|ZP_03046985.1| resolvase [Escherichia coli E22]
 gi|192926429|gb|EDV81063.1| resolvase [Escherichia coli E22]
          Length = 236

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 81/174 (46%), Gaps = 38/174 (21%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQ-------GKG-----DKI- 197
           D R   +   L+  G RI+EAL++TP+++  D  +  +R++       G+G     +KI 
Sbjct: 49  DERQRMLFATLWITGPRITEALTITPEDLQLDGPRHCIRLRKLKQRQRGRGRPSADEKIA 108

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV-------FQRYIRQL 250
           RIVPLL +       Y D       L   L  FR  R +PL            Q+ I + 
Sbjct: 109 RIVPLLDAA------YVD------QLRRYLATFRTGRRRPLFAVSRKTAWLWMQQAIDRA 156

Query: 251 RRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R  +    LP +    TLRHSFA HL  N    + +Q+ +GH R  +T++Y  V
Sbjct: 157 REEVIEFALP-AINPKTLRHSFAMHLYFNHVPPKVVQAYMGHERYESTEVYLKV 209


>gi|237711591|ref|ZP_04542072.1| integrase [Bacteroides sp. 9_1_42FAA]
 gi|229454286|gb|EEO60007.1| integrase [Bacteroides sp. 9_1_42FAA]
          Length = 380

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 61/146 (41%), Gaps = 14/146 (9%)

Query: 166 CGLRISEALSLTPQNIMDDQSTL---RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           CGLRIS+   L  ++I           +  K      +PL     K + E  D  P DL 
Sbjct: 237 CGLRISDIRKLRWRDISISGGQWLVSVVMTKTTNPVYIPLSSQAVKWLPERKDCAPEDL- 295

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
                 +F G+     N G     ++      G+  + T HT RHS A  LL+ G D+ +
Sbjct: 296 ------VFGGLP----NAGNLCISLKNWADKAGVKKNVTFHTARHSCAVLLLTLGADIYT 345

Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGD 308
           +  ILGH  +  TQ+Y  +  K   D
Sbjct: 346 VSKILGHRSVRATQVYAKIVDKKKDD 371


>gi|16519924|ref|NP_444044.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
 gi|2497423|sp|P55639|Y4RF_RHISN RecName: Full=Putative integrase/recombinase y4rF
 gi|2182603|gb|AAB92472.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
          Length = 425

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 121/294 (41%), Gaps = 30/294 (10%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L   RGL   T +      R+FL +       +   Q +  L+   + A +  R +    
Sbjct: 136 LRTVRGLEPKTREGILLGGRRFLDWF----RHRHPGQNLEALTAEHVLAAVEHRLSLSAT 191

Query: 85  DRSLKRSLSGIKSFLKYL--KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
             +   + S I++FL++L          + I+      +   LP  L        +D + 
Sbjct: 192 SGTRTAATSHIRTFLRFLCWAGHHRQDLARIVPRTPYWRLAHLPPRLAWGDVRRAIDAI- 250

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRI 199
                 T  +  R+ A+L LL   G+R  E  ++  Q+I  D  T  +   + KG + R+
Sbjct: 251 ----GATTPVAIRDRAVLLLLATTGIRNGELRAIRLQDI--DWRTGEVFIRRTKGKRDRV 304

Query: 200 VPLLPSVRKAILEYYDLC------PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           VPLL     A+++Y          P+ L L+   P+       P++     R +R+  R+
Sbjct: 305 VPLLEETGAALVDYILRARPKVDSPY-LFLSFTPPVGAFKSAAPVS-----RIVRKRLRH 358

Query: 254 LGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            G+ L     AH LRHS AT L+     +  +  +LGH  ++TT +Y  V +  
Sbjct: 359 GGVELGRVAGAHLLRHSLATQLVGQRRPINEVADLLGHRSINTTALYVKVAASQ 412


>gi|116686767|ref|YP_840014.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
 gi|116652482|gb|ABK13121.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
          Length = 578

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 127/319 (39%), Gaps = 65/319 (20%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +ERG  LS LT +    D   +  F+   T  +  +  +R     + R F     +  + 
Sbjct: 258 VERGRALSSLTTE----DALAYRAFIRRPTPHERWVGPVRPRGAPDWRPF-----SGALS 308

Query: 85  DRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSL--PRALNEKQAL---TL 137
            RS   +LS + +  ++L +++  +      + +R+ + + +L    A  E + L   T+
Sbjct: 309 ARSAAYTLSVLGALFRWLIEQRYLLANPFAGVKVRDTRGATALDTSHAFTEGEWLLVRTI 368

Query: 138 VDNV-----LLHTSHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDD---QS 186
            D +         + +  W  A    + ++L   Y  GLR SE +  T  +I  D    +
Sbjct: 369 ADGLEFGKRTADGAPQPGWTPAAAQRLRFILDFGYATGLRASELVGATLGDIETDAHGDA 428

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP------ 240
            L++ GKG K   V L P  R A+  Y         +  +LP+    R +P  P      
Sbjct: 429 WLKVIGKGSKAARVALPPLARTALDRYL--------VARRLPVTPA-RWRPDTPLIPRLA 479

Query: 241 -------------GVFQRYIRQLRRYLGLPLSTTAHTLR--------HSFATHLLSNGGD 279
                         V QR+  Q    +       AH LR        H+ ATH L+ G +
Sbjct: 480 EDDAAAITSVRLWKVMQRFFAQTADAVEADHPALAHKLRQASPHWMRHTHATHALARGAE 539

Query: 280 LRSIQSILGHFRLSTTQIY 298
           L +++  L H  +STT IY
Sbjct: 540 LTTVRDNLRHASISTTSIY 558


>gi|296106652|ref|YP_003618352.1| hypothetical protein lpa_01609 [Legionella pneumophila 2300/99
           Alcoy]
 gi|295648553|gb|ADG24400.1| hypothetical protein lpa_01609 [Legionella pneumophila 2300/99
           Alcoy]
          Length = 191

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 66/151 (43%), Gaps = 9/151 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLL-PSVRKAILE 212
           R+S ++ + Y   LR+SE +SL    I   Q  L +  K + I    PL  P +R     
Sbjct: 39  RDSTMILIAYRHELRVSELISLRWSQIDLKQGLLHVIRKKNGIPASHPLFGPEIRALRQL 98

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
             D    D        +F   R  P+    F++ I +      L L+T  H LRHS    
Sbjct: 99  KRDYPETDY-------VFMTERKAPITADTFRKIIARAGEKAELGLATYPHMLRHSTGFK 151

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           L ++G D RSIQ  LGH  +  T  YT + S
Sbjct: 152 LANDGRDTRSIQHYLGHKNIQHTVRYTEIAS 182


>gi|215428049|ref|ZP_03425968.1| integrase [Mycobacterium tuberculosis T92]
          Length = 167

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 62/147 (42%), Gaps = 17/147 (11%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           D R   ++ L    GLR +EA      ++MD    L + GKG K RIVP        I +
Sbjct: 23  DRRTELMIRLAGEAGLRRAEAAQAHTGDLMDG-GLLLVHGKGGKRRIVP--------ISD 73

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           Y      D       P   G  G      V +   R L      P   T HTLRH +AT 
Sbjct: 74  YLAALIRDTPHGYLFP--NGTGGHLTAEHVGKLVSRAL------PGDATMHTLRHRYATR 125

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYT 299
                 +LR++Q +LGH  + TT+ YT
Sbjct: 126 AYRGSHNLRAVQQLLGHASIVTTERYT 152


>gi|254248336|ref|ZP_04941656.1| Phage integrase [Burkholderia cenocepacia PC184]
 gi|124874837|gb|EAY64827.1| Phage integrase [Burkholderia cenocepacia PC184]
          Length = 431

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 77/192 (40%), Gaps = 34/192 (17%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSVR 207
           R   +  LLY  GLRI+EA   T             ++  L + GKG + R+VP    + 
Sbjct: 241 RARWLFTLLYLGGLRITEAADTTMGQFFCRRDANGHERWWLDVTGKGGRQRLVPATDEMM 300

Query: 208 KAILEY---YDLCPFDLN---LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL--- 258
             +  Y   + L    L+     + LP   G   KPL      R ++Q+ R+    L   
Sbjct: 301 AELARYRRTHGLPALPLDGEPTPLVLPF--GQARKPLTRAALHRIVKQVFRHAAGRLRAN 358

Query: 259 ------------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
                         +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +    
Sbjct: 359 GKTGEQAARVLEQASAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHADD--- 415

Query: 307 GDWMMEIYDQTH 318
            DW     ++ H
Sbjct: 416 -DWRHRETEEKH 426


>gi|28868299|ref|NP_790918.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|28851536|gb|AAO54613.1| integrase/recombinase XerD, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 296

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 127/276 (46%), Gaps = 26/276 (9%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T ++Y   T++FL +      + + + ++ ++S   +  +I + + Q +   S+K+ L+ 
Sbjct: 16  TRRAYARATQEFLTWC-----QVVGVPSLTEVSPLHVATWI-ELQMQTLAAPSVKQRLAA 69

Query: 95  IKSFLKYLKKRKITTESNILNMR---NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           I+    +L   ++   +   ++R   +  ++   P  L   +A  L+D++ + T      
Sbjct: 70  IRHLFDWLVVGQVVPHNPAASVRGPSHTSRTGKTP-VLEPLEARQLLDSIDICTP----- 123

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              R+ A++ L+     RI  AL++  ++  I + +  +R++ KG K  ++P   S+ +A
Sbjct: 124 AGLRDRALIALMVFSFARIGAALAMKVEDVYIQNQRLWVRLKEKGGKQHVMPCQHSL-EA 182

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGI-RG------KPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            L  Y L    ++ + + PLFR I RG        L        +R+     G+  S   
Sbjct: 183 YLHAY-LVETGIDNDPKGPLFRTIGRGTEQLSVNALPQANAHAMVRRRALAAGIKTSIGN 241

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           HT R +  T  L NGG L +  ++  H    TTQ+Y
Sbjct: 242 HTFRATGITAYLKNGGTLENAAAMANHASTRTTQLY 277


>gi|75761190|ref|ZP_00741178.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|228905242|ref|ZP_04069233.1| Tyrosine recombinase [Bacillus thuringiensis IBL 4222]
 gi|74491323|gb|EAO54551.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|228854396|gb|EEM99063.1| Tyrosine recombinase [Bacillus thuringiensis IBL 4222]
          Length = 358

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 126/304 (41%), Gaps = 42/304 (13%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK---------RRTQKIGD 85
           TL +Y  D R F  +L   +E+ I  + I+ +S++++     K         +  Q + +
Sbjct: 43  TLLNYVYDFRVFFNWLL--SEQIIEFKPIKDVSFSDLENLKKKDVENFMRFLKLQQNMQN 100

Query: 86  RSLKRSLSGIKSFLKYL------------------KKRKITTESNILNMRNLKKSNSLPR 127
            S+ R +S +KS  KYL                   K +I  +   LN R  +  + +  
Sbjct: 101 SSVNRKISALKSLFKYLTSLSENEDGECYFYRNVMAKIEIHKDKETLNARAKRMRSKIFH 160

Query: 128 ALNEKQALTLV--DNVLLHTSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIM 182
             ++++ L  +  ++    T H+  +      R+ AIL L  G G+R+SE   L  ++I 
Sbjct: 161 NDDDQEFLNYIKYEHEKSLTRHQLFYFLRDKERDVAILSLFLGSGIRVSELADLRMEDIN 220

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKP 237
             +  + +  KG+K   V + P     + +Y ++      P     N+ L  ++    +P
Sbjct: 221 LKERLIDVIRKGNKEDSVWITPIALNDLEKYMEIRGNKYAPGKELQNVFLSKYKHT-AQP 279

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+    Q  + +  +  G  +S   H LRH+ A  L     D   +   LGH    T  +
Sbjct: 280 LSVRAIQDIVEKYTKAYGKRMS--PHKLRHTLANKLYMEEKDSLQVMQQLGHTSQDTALL 337

Query: 298 YTNV 301
           YT +
Sbjct: 338 YTQL 341


>gi|301309648|ref|ZP_07215588.1| integrase [Bacteroides sp. 20_3]
 gi|300832366|gb|EFK62996.1| integrase [Bacteroides sp. 20_3]
          Length = 185

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 22/153 (14%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDD----------QSTLRIQGKGDKIRIVPLLPSVRKA 209
            ++ C  GL  S+  +L+ +N++ D          +  L  + K   I  +PLLP V  A
Sbjct: 24  FVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRIKLEHRRKASSISNIPLLP-VPLA 82

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           ILE Y   P  +     LP+    +           Y++++  + G+  + T H  RH+F
Sbjct: 83  ILEKYREHPVCIKKGCCLPVMCNQK--------MNSYLKEIADFCGIKKNLTTHVARHTF 134

Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T + L+N   L+ +  +LGH     TQ Y  V
Sbjct: 135 GTTVTLANNVPLQDVSVMLGHASTRMTQHYARV 167


>gi|284008591|emb|CBA75173.1| phage integrase [Arsenophonus nasoniae]
          Length = 300

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 107/249 (42%), Gaps = 52/249 (20%)

Query: 67  SYTEIRAFISKRRTQ---KIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKS 122
           SY E R     RRT+   K+  R++   L+  ++    LK+  +   E+ + ++R  K  
Sbjct: 66  SYREKRISGKLRRTERLDKVSPRTMNLELAYFRAMFNELKRLGEWKHENPVESIRPFK-- 123

Query: 123 NSLPRALNEKQALTLVD----NVLLHTSHETKWIDARNSAILYLLYGC---GLRISEALS 175
                   E+  ++ +D    N+LL      + +++ N  +L ++  C   G R SEA S
Sbjct: 124 -------TEEAEMSFLDHDEINLLL-----KECVNSSNKHLLTVVKICLSTGARWSEAES 171

Query: 176 LTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
           L   N+    S  RI     KG++ R VP+   +   I E   +                
Sbjct: 172 LRGCNV----SKFRITYTNTKGNRNRTVPISEELYNLIAEKKTI---------------- 211

Query: 233 IRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
                L    +  +   L+R  + LP    +H LRH+FA+H + NGG++  +Q ILGH  
Sbjct: 212 ---GALFSSCYSAFRTALKRTKIVLPDGQMSHVLRHTFASHFMMNGGNILVLQRILGHTD 268

Query: 292 LSTTQIYTN 300
           +  T  Y +
Sbjct: 269 IKMTMRYAH 277


>gi|282879934|ref|ZP_06288658.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281306176|gb|EFA98212.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
          Length = 406

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 92/201 (45%), Gaps = 36/201 (17%)

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMD 183
           PR++ +++   ++D        E +W + R    L++ + C  GL IS+  +L  +NI+ 
Sbjct: 222 PRSITKEELEHIID-------LEIEWENYRIVRDLFV-FSCFTGLAISDVRNLREENIVT 273

Query: 184 DQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-- 238
           ++  L I+G+  K +    V +LP     +  Y                 RGIR   +  
Sbjct: 274 EEGELCIKGRRMKTKTPYRVQVLPPALTIMNRY-----------------RGIRAGFVFD 316

Query: 239 --NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTT 295
                +    +  ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TT
Sbjct: 317 VPTTDIVLNGMHYIQRNIGMETPLTFHMARHTFASIITLSAGVPIETVSRMLGHTNLRTT 376

Query: 296 QIYTNVNSKNGGDWMMEIYDQ 316
           Q+Y  V+S+    W M+   Q
Sbjct: 377 QVYAAVSSER-IHWDMQAIQQ 396


>gi|149911868|ref|ZP_01900469.1| Integrase [Moritella sp. PE36]
 gi|149805073|gb|EDM65098.1| Integrase [Moritella sp. PE36]
          Length = 341

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 20/149 (13%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           I  + + I+ +    G RI EA+ L    +   + T     KG K R VP+   +   I 
Sbjct: 194 ISGQMTQIIKICLATGARIMEAIELKGAQVTKHKITF-TNTKGKKNRTVPISEDLYNEIY 252

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           +           N    LF          GV  +++     +  LP     H LRH+FA+
Sbjct: 253 Q-----------NTSGRLF------TCGYGVLHKWLNLC--FSDLPKGQATHILRHTFAS 293

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           + + NGG++  +Q ILGH  +  T  Y++
Sbjct: 294 YFMMNGGNILVLQKILGHADIKQTMAYSH 322


>gi|86740848|ref|YP_481248.1| phage integrase [Frankia sp. CcI3]
 gi|86742213|ref|YP_482613.1| phage integrase [Frankia sp. CcI3]
 gi|86567710|gb|ABD11519.1| phage integrase [Frankia sp. CcI3]
 gi|86569075|gb|ABD12884.1| phage integrase [Frankia sp. CcI3]
          Length = 411

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 75/153 (49%), Gaps = 14/153 (9%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AIL L    G R +E L +   ++      +R+  KG   R    LP+  +A + + 
Sbjct: 217 RDRAILALGVSTGARAAELLGMRGADLDWGGQLVRVVRKG--TRAEQWLPASPEAFV-WL 273

Query: 215 DLCPFDLN---LNIQLPLFRGI--RG---KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            L   D+    L    P++R +  RG   +PLN    +   R+  R LG   + T H LR
Sbjct: 274 RLYLADVGGGVLGAGDPVWRTVYRRGGVHEPLNYEALRAVFRRANRRLGA--NWTMHDLR 331

Query: 267 HSFATHLLSNGG-DLRSIQSILGHFRLSTTQIY 298
           H+ A  ++ +G   LR  Q+ILGH  LSTTQ+Y
Sbjct: 332 HTCAIRMVRDGRLSLRDAQTILGHAHLSTTQLY 364


>gi|323475083|gb|ADX85689.1| XerC/D integrase-recombinase protein [Sulfolobus islandicus REY15A]
 gi|323477815|gb|ADX83053.1| XerC/D integrase-recombinase protein [Sulfolobus islandicus
           HVE10/4]
          Length = 291

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 123/273 (45%), Gaps = 64/273 (23%)

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK--RKITTE------SNILNMRNLKKSNS 124
           AFI+       G+ ++K   + +K FL ++ K  RK+T+E      SN+LN     K + 
Sbjct: 17  AFINALVLAGAGNGTIKLYSTAVKDFLDFINKDPRKVTSEDLNKWISNLLNREGKVKGDE 76

Query: 125 L----PRALNEKQALTLVDNVL--LHTS----------HETKWID-------------AR 155
           +     +++  +  +  V   L  L+ S           E K +D              +
Sbjct: 77  VEKRRAKSVTIRYYIIAVRRFLKWLNVSVKPPIPKVRRKEVKALDESQIQKVLNMCKRTK 136

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYY 214
           +  I+ LL   GLR +E LS+  +++  + + +R++  K  + R+V      ++ + +Y 
Sbjct: 137 DKLIIRLLLDTGLRANELLSVLVKDVDLENNMIRVRNTKNGEERVVFFTDETKQLLRKY- 195

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ----RYIRQLRRYLG--LPLSTTAHTLRHS 268
                             ++GK L+  +F        R+L+R LG  + +    H LRH+
Sbjct: 196 ------------------MKGKKLDEKLFDITYDALYRKLKR-LGNKVEIELRPHILRHT 236

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           FAT  L  G ++ ++Q +LGH  + TTQIYT++
Sbjct: 237 FATLSLKRGINVITLQKLLGHKDIKTTQIYTHL 269


>gi|160944688|ref|ZP_02091915.1| hypothetical protein FAEPRAM212_02202 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443872|gb|EDP20876.1| hypothetical protein FAEPRAM212_02202 [Faecalibacterium prausnitzii
           M21/2]
          Length = 416

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 75/188 (39%), Gaps = 48/188 (25%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK--------------------GDKIR 198
           +   + G G RISE + L   +I  +   + IQ                          R
Sbjct: 212 MFTFMLGTGCRISETVGLCWSDIDFESGFITIQHNLVYHDHEVGGCYFTMSTPKTAAGKR 271

Query: 199 IVPLLPSVRKAI-------LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL- 250
            +P+LP VRKA+        E   +C ++++  I   +F    G+P NP    R I+++ 
Sbjct: 272 AIPILPEVRKALEQERTNQQELELVCEYEID-GISDFVFLNRFGQPQNPQTVNRAIKRIS 330

Query: 251 ----------------RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
                              L  P S   H LRH+F T L  N  +L+ IQ I+GH  +ST
Sbjct: 331 VAHNEAELEKAEKEKREPQLLPPFS--CHNLRHTFCTRLCENETNLKIIQDIMGHRDIST 388

Query: 295 T-QIYTNV 301
           T +IY   
Sbjct: 389 TMEIYAEA 396


>gi|149200530|ref|ZP_01877541.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Lentisphaera araneosa HTCC2155]
 gi|149136379|gb|EDM24821.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Lentisphaera araneosa HTCC2155]
          Length = 400

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 36/176 (20%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR--------KAILEY 213
           L+YG GLR  E   L  Q++   +  L I+ +   ++   L P           K++   
Sbjct: 207 LMYGAGLRSGECYKLRMQDLDFKKKVLLIRDRLGVVKRETLFPESLFKELKVHIKSVKMV 266

Query: 214 YDLCPFDLNLNIQLP-----------------LF-----------RGIRGKPLNPGVFQR 245
           Y       N  ++LP                 LF           + ++ +  +P   QR
Sbjct: 267 YSADQTIENAEVRLPDEYEAVEDEAKQWKWFWLFPSAVLKIGSDKQSLKREHYHPWHLQR 326

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             +++ +   +       +LRHSFA H+L  G D+R++Q++LGH  + TT IY+ +
Sbjct: 327 KFKEILKSTQIENQVNLDSLRHSFAVHMLEAGYDIRTVQTLLGHQDVKTTMIYSKL 382


>gi|226950799|ref|YP_002805890.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
 gi|226840759|gb|ACO83425.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
 gi|322807682|emb|CBZ05257.1| tyrosine recombinase xerD [Clostridium botulinum H04402 065]
          Length = 199

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 91/196 (46%), Gaps = 12/196 (6%)

Query: 122 SNSLPRALNEKQALTLVDNVLL-HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           S++  + L +++A+ L + ++    SH       R+ A+  + Y CGLR SE   +   +
Sbjct: 5   SSNKMKYLTQQEAIRLFNAIIFSDNSHA-----VRDLALFRVAYRCGLRASEISLIKLDD 59

Query: 181 IMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
              D+  L  +  KG     + L  + +KA+  Y  +  + +  N +  LF+  +  P++
Sbjct: 60  YNADKGDLYCKRLKGSNNNTIRLDATTKKALDTY--IRDYKIFCNSE-TLFKSQKNNPIS 116

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAH--TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
                  +++  +   +   +  H  TL+H+ A HL  +  D++ +Q  LGH  +S T+I
Sbjct: 117 RQTLDYLMKKYCKIANISDKSKHHFHTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEI 176

Query: 298 YTNVNSKNGGDWMMEI 313
           Y    +K      M++
Sbjct: 177 YFQFTTKQQEKMYMKL 192


>gi|78060063|ref|YP_366638.1| Phage integrase [Burkholderia sp. 383]
 gi|77964613|gb|ABB05994.1| Phage integrase [Burkholderia sp. 383]
          Length = 578

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 129/318 (40%), Gaps = 63/318 (19%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +ERG  LS LT +    D   +  F+   T  +  +  +R     + R F     +  + 
Sbjct: 258 VERGRALSSLTTE----DAVAYRAFVRRPTPHERWVGPVRPRGAPDWRPF-----SGALS 308

Query: 85  DRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSL--PRALNEKQAL---TL 137
            RS   +LS + +  ++L +++  +      + +R+ + +N+L    A  E + L   T+
Sbjct: 309 ARSAAYTLSVLGALFRWLIEQRYLLANPFAGVKVRDTRGANALDTSHAFTEGEWLLVRTI 368

Query: 138 VDNVLLHTS-----HETKWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDD---QS 186
            D +    S      ++ W  A    + ++L   Y  GLR SE +  T  +I  D    +
Sbjct: 369 ADGLEFRKSTGTGTPQSGWTPAAAQRLRFILDFGYATGLRASELVGATLGDIETDAHGDA 428

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF--RGIRGKPLNPG--- 241
            L++ GKG K   V L P  R  +  +         +  +LP+   R     PL P    
Sbjct: 429 WLKVIGKGSKAARVALPPLARTGLDRFL--------VARRLPVTPSRWRPDTPLIPSLAE 480

Query: 242 -------------VFQRYIRQLRRYLGL--PL------STTAHTLRHSFATHLLSNGGDL 280
                        V QR+  Q    +    P         + H +RH+ ATH L+ G +L
Sbjct: 481 DGAAAITSVRLWKVMQRFFAQTADQVDADNPALAQKLRQASPHWMRHTHATHALARGAEL 540

Query: 281 RSIQSILGHFRLSTTQIY 298
            +++  L H  +STT IY
Sbjct: 541 TTVRDNLRHASISTTSIY 558


>gi|107022990|ref|YP_621317.1| phage integrase [Burkholderia cenocepacia AU 1054]
 gi|105893179|gb|ABF76344.1| phage integrase [Burkholderia cenocepacia AU 1054]
          Length = 578

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 127/319 (39%), Gaps = 65/319 (20%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +ERG  LS LT +    D   +  F+   T  +  +  +R     + R F     +  + 
Sbjct: 258 VERGRALSSLTTE----DALAYRAFIRRPTPHERWVGPVRPRGAPDWRPF-----SGALS 308

Query: 85  DRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSL--PRALNEKQAL---TL 137
            RS   +LS + +  ++L +++  +      + +R+ + + +L    A  E + L   T+
Sbjct: 309 ARSAAYTLSVLGALFRWLIEQRYLLANPFAGVKVRDTRGATALDTSHAFTEGEWLLVRTI 368

Query: 138 VDNV-----LLHTSHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDD---QS 186
            D +         + +  W  A    + ++L   Y  GLR SE +  T  +I  D    +
Sbjct: 369 ADGLEFGKRTADGAPQPGWTPAAAQRLRFILDFGYATGLRASELVGATLGDIETDAHGDA 428

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP------ 240
            L++ GKG K   V L P  R A+  Y         +  +LP+    R +P  P      
Sbjct: 429 WLKVIGKGSKAARVALPPLARTALDRYL--------VARRLPVTPA-RWRPDTPLIPRLA 479

Query: 241 -------------GVFQRYIRQLRRYLGLPLSTTAHTLR--------HSFATHLLSNGGD 279
                         V QR+  Q    +       AH LR        H+ ATH L+ G +
Sbjct: 480 EDDAAAITSVRLWKVMQRFFAQTADAVEADHPALAHKLRQASPHWMRHTHATHALARGAE 539

Query: 280 LRSIQSILGHFRLSTTQIY 298
           L +++  L H  +STT IY
Sbjct: 540 LTTVRDNLRHASISTTSIY 558


>gi|237712751|ref|ZP_04543232.1| integrase [Bacteroides sp. D1]
 gi|262406796|ref|ZP_06083345.1| integrase [Bacteroides sp. 2_1_22]
 gi|294645845|ref|ZP_06723527.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294807491|ref|ZP_06766290.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298484331|ref|ZP_07002493.1| integrase [Bacteroides sp. D22]
 gi|229447202|gb|EEO52993.1| integrase [Bacteroides sp. D1]
 gi|262355499|gb|EEZ04590.1| integrase [Bacteroides sp. 2_1_22]
 gi|292638811|gb|EFF57147.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294445307|gb|EFG13975.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295087263|emb|CBK68786.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
 gi|298269521|gb|EFI11120.1| integrase [Bacteroides sp. D22]
          Length = 396

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 46/163 (28%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           A L+  Y  GLR S+  SLT  NI++      I           +  SV+  I       
Sbjct: 238 AFLFCCYA-GLRYSDFTSLTSANIVEFHQETWI-----------IYKSVKTGI------- 278

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST----------------- 260
                  ++LPL+    GK +   + QRY   L  +  L  ++                 
Sbjct: 279 ------EVRLPLYLLFEGKGIE--ILQRYKDDLDSFFKLKDNSNINKELNLLAGLAKIDK 330

Query: 261 --TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             + HT RH+ AT LL +G ++ ++Q +LGH  + TTQ+Y N+
Sbjct: 331 RVSFHTARHTNATLLLYSGANITTVQKLLGHKSVKTTQVYANI 373


>gi|323485587|ref|ZP_08090931.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
 gi|323401105|gb|EGA93459.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
          Length = 320

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 81/190 (42%), Gaps = 14/190 (7%)

Query: 133 QALTLVDNVLLHTSHET-KWIDARNSAILY-----LLYGCGLRISEALSLTPQNIMDDQS 186
           Q    +DNV+    +E  K    R+   LY      +   G R+SE +    ++I     
Sbjct: 137 QHKNYLDNVISEADYEYLKNCLLRDEKYLYYFIIRFMAATGARVSEVIQFEAEDIFTGYK 196

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
              I  KG+K+R + +  +++K  + +      +        +F    G P+ PG  +  
Sbjct: 197 D--IYSKGNKLRRIYVPKALQKDAIAWLKAIRQERGF-----VFLNRYGNPITPGGIRGQ 249

Query: 247 IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           ++ +    G+ P     H+ RH FA   +   GD+  +  +LGH  L TT+IY   +S  
Sbjct: 250 LKNMALAYGMNPEVVHPHSFRHRFAKSFIEKCGDISLLSDLLGHKNLETTRIYLRRSSSE 309

Query: 306 GGDWMMEIYD 315
             + + ++ D
Sbjct: 310 QYEIINKVVD 319


>gi|322831910|ref|YP_004211937.1| integrase family protein [Rahnella sp. Y9602]
 gi|321167111|gb|ADW72810.1| integrase family protein [Rahnella sp. Y9602]
          Length = 328

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 64/149 (42%), Gaps = 20/149 (13%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           ++  N  +  L    G R  E  +L  ++I+ +  T  ++ K  K R VP+   + +AI 
Sbjct: 180 LEGDNLKVAQLCLATGGRWGEVSNLKGEHIIKNVITF-MKTKNGKRRSVPVSDELVRAIK 238

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
                  F  N N      R +  KP                  LP    AH LRH+FAT
Sbjct: 239 TKASGRLFVSNYNTVRMTLRKV--KP-----------------DLPKGQAAHVLRHTFAT 279

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           H + NGG++ ++Q +LGH  +  T  Y +
Sbjct: 280 HFMMNGGNIITLQRVLGHATIQQTMTYAH 308


>gi|298241379|ref|ZP_06965186.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297554433|gb|EFH88297.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 293

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 117/275 (42%), Gaps = 31/275 (11%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T+++Y  D R FL     +  E         ++   I+ F+       +  R   R  S 
Sbjct: 24  TIKAYSHDLRHFLAAAPTFLVE---------VTAPLIQEFLQGDGHHSVATRG--RRYST 72

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + +F  +  ++++ + + +  +  + +    PR L  ++    VD +    S        
Sbjct: 73  LCTFYHWAIRQELVSSNPMERLDPITQPQKEPRPLAPEE----VDKIFKAISPSR----L 124

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           R+  +  LLY  G+R+ EAL+L   ++    D   +R+ GKG + R V L  + +   L 
Sbjct: 125 RDRTLFMLLYETGVRVGEALALQYSDVTLAQDDEKIRVFGKGQRERTVMLTAAPQSIRLL 184

Query: 213 YYDLCPFDLNLNIQLPLFRG---IRGKPL--NPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
              L    +       +FRG     G PL  +  V Q+  ++  +  G+    T H LRH
Sbjct: 185 RRHLKESHITSG---SVFRGDPRYGGSPLPLDYTVVQKAWQKYCQAAGV--QATIHQLRH 239

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           S A+ L+  G  + +++  +GH  L +T  Y  V+
Sbjct: 240 SRASQLIQAGVPVTTVRKQMGHRNLQSTLRYAEVD 274


>gi|239623219|ref|ZP_04666250.1| site-specific recombinase [Clostridiales bacterium 1_7_47_FAA]
 gi|239522185|gb|EEQ62051.1| site-specific recombinase [Clostridiales bacterium 1_7_47FAA]
          Length = 282

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 8/143 (5%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           ++  L   G R+SE + +  +++  D   + +  KG K+R + L  ++    L++     
Sbjct: 131 VVRFLACTGARVSELIQMKAEHL--DMRYMDLYSKGGKVRRIYLPDTLCLEALDWVHQRG 188

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNG 277
            D        +F    G+ + P      ++ L R  G+P  T   H  RH FA + L+N 
Sbjct: 189 IDSGF-----IFITSHGQLITPRGISSQLKVLARRYGIPADTVYPHAFRHRFAKNFLANF 243

Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300
            D+  +  ++GH  + TT+IY N
Sbjct: 244 NDITLLADLMGHESIETTRIYLN 266


>gi|237740650|ref|ZP_04571131.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           2_1_31]
 gi|229422667|gb|EEO37714.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           2_1_31]
          Length = 280

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 114/270 (42%), Gaps = 32/270 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N++  LE E      T+ S   D  QFL +L  +      I    +L    I+ + +K 
Sbjct: 7   KNFIYYLEFEENKKHNTVISIRKDLNQFLTYLNEHD-----IIDFNKLDELLIKEYFTKL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +T+KI   +  R LS IK F KYL  + +  + + + + + K          + + LT  
Sbjct: 62  KTEKISASTFNRRLSSIKKFYKYLVDKGLKEKGSEILIESEKNDEK------KIEYLTPE 115

Query: 139 DNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDK 196
           +  L+ T+ E +  +  R+  +  LLY  G+ ++E LSL   N  ++ +    ++ K  K
Sbjct: 116 EINLVRTTMEGESFNILRDRLMFELLYSSGMTVAELLSLGEVNFNLEKREIYILKNKLSK 175

Query: 197 IR---------IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
                       +  L S ++   E       D N NI   +F     + L     +R I
Sbjct: 176 TMYFSETCKEFYIKFLNSKKEKFKE-------DYNPNI---IFTNNSNERLTDRSVRRLI 225

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            +      L    + +TLRHSF  ++L NG
Sbjct: 226 NKYAEMANLNKEISPYTLRHSFCIYMLKNG 255


>gi|150378362|ref|YP_001314956.1| phage integrase family protein [Sinorhizobium medicae WSM419]
 gi|150032909|gb|ABR65023.1| phage integrase family protein [Sinorhizobium medicae WSM419]
          Length = 412

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 123/303 (40%), Gaps = 29/303 (9%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL    ++L+ +   RGL   + +      R+FL +   +       Q I  L+  ++ A
Sbjct: 115 LLASFSDYLRRV---RGLEPKSREGVLLGGRRFLDWCRHHHPG----QDIEALTAKQVLA 167

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYL--KKRKITTESNILNMRNLKKSNSLPRALNE 131
            +  R +      S   + S I++FL++L    R     + I+      +   LP  L  
Sbjct: 168 AVEYRLSLSTTSGSRTAATSHIRTFLRFLYWAGRHHQDLARIVPRTPSWRLAHLPPRLAW 227

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI- 190
                 +D +       T  +  R+ A+L LL   G+R  E  ++  ++I  D  T  + 
Sbjct: 228 NDVRHAIDAI-----GATTPVGIRDRAVLLLLATTGIRNGELRAIRLRDI--DWRTGEVF 280

Query: 191 --QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP----GVFQ 244
             + KG + R+VPLL     A+ +Y           +  P        P+ P        
Sbjct: 281 VRRTKGKRDRVVPLLEETGAALADYI----LRARPRVDSPYLFLSFTPPVGPFKCAAPVS 336

Query: 245 RYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           R +R+  R+ G+ L     AH LRHS AT L+     +  +  +LGH  ++TT +Y  V 
Sbjct: 337 RIVRKRLRHGGVELGRVAGAHLLRHSLATQLVGQRRPINEVADLLGHRSINTTALYVKVA 396

Query: 303 SKN 305
           +  
Sbjct: 397 ASQ 399


>gi|83814313|ref|YP_444939.1| phage integrase family site specific recombinase [Salinibacter
           ruber DSM 13855]
 gi|83755707|gb|ABC43820.1| site-specific recombinase, phage integrase family [Salinibacter
           ruber DSM 13855]
          Length = 297

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 22/224 (9%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S+   L+ ++ F +YL      TE+    ++  ++  +  R++  +  +  ++ V+    
Sbjct: 65  SVSTYLTALRRFCQYLTDVGELTENPATGVKGNRRPETHSRSVLTESDIEKLEAVV---- 120

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-----RIQGKGDKIRI-- 199
            +   ID R+ AI+ L+   GL     + +   ++ D + TL     R+QGKG +++   
Sbjct: 121 DDATQIDKRDHAIISLMLYAGL---SEIEIVRADVEDLEHTLMGPVLRVQGKGREVKDQE 177

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLF--RGIR--GKPLNPGVFQRYIRQLRRYLG 255
            PL P V +A+  Y D      +++ + PLF   G R  GK L     +  I    +  G
Sbjct: 178 APLDPPVLEAVEAYLDTRD---DVHPEDPLFVSHGHRSKGKRLQTRSVRSRINGYLKEAG 234

Query: 256 LPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +     T H+L H+ A   L++G  L  ++  + H  L TT IY
Sbjct: 235 IKRKGVTPHSLTHTAALLWLNDGMPLEEVKERMRHGTLDTTMIY 278


>gi|262383463|ref|ZP_06076599.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262294361|gb|EEY82293.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 420

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 33/47 (70%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           G+    T H  RHS+A+ LL NG D+ +I+S++GH  + TTQIYT++
Sbjct: 355 GIKKHITFHVARHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHI 401


>gi|111020166|ref|YP_703138.1| tyrosine recombinase [Rhodococcus jostii RHA1]
 gi|110819696|gb|ABG94980.1| possible tyrosine recombinase [Rhodococcus jostii RHA1]
          Length = 290

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 68/168 (40%), Gaps = 19/168 (11%)

Query: 155 RNSAILYLLYGCGLRISEALSL----------TPQNIMDDQSTLRIQGKGDK-------- 196
           R+SA+L   Y  GLR +E   +           PQ+       +R  GK  K        
Sbjct: 103 RDSALLKFCYAFGLRRAEVCRIDLVDLRRNPQAPQHRQVGSVAVRY-GKASKGGPAKRRT 161

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +  VP    + + I +Y       L       L+   R   ++P          RR  GL
Sbjct: 162 VLTVPEFDWIVEVIEQYLSEVRPALAPGAHPALWVTERAGRISPRSVNLAFAGARRECGL 221

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +   H LRHS+ THL+     +R +Q  +GH   STT IYT V+++
Sbjct: 222 DSALDLHCLRHSYVTHLIEFDYPVRFVQEQVGHAHASTTAIYTGVSNE 269


>gi|146300388|ref|YP_001194979.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146154806|gb|ABQ05660.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 419

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 85/184 (46%), Gaps = 19/184 (10%)

Query: 121 KSNSLPRALNEKQALTLVD-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K   +P   + ++ LT+ + NVL     E    D    A L+     GLR S+   L  +
Sbjct: 230 KIKGIPEQESRREYLTIKELNVLAEMPCEK---DVLKRAALFSAL-TGLRHSDIQKLRWK 285

Query: 180 NIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
            I   DD + L    K  K R V  +P   +A+     LC  +  L  QL +F  +   P
Sbjct: 286 EISLEDDMAKLHFTQK--KTRGVEYMPISEQAL----QLCG-EPRLPGQL-VFEDL---P 334

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
            +P    R +++     G+  + T H  RH+FAT  LS+G D+ ++  +LGH  + TTQI
Sbjct: 335 -DPSWISRPLKKWVESAGIKKNITFHCFRHTFATLQLSSGTDIYTVSKMLGHTNVKTTQI 393

Query: 298 YTNV 301
           Y  V
Sbjct: 394 YAKV 397


>gi|296127267|ref|YP_003634519.1| integrase family protein [Brachyspira murdochii DSM 12563]
 gi|296019083|gb|ADG72320.1| integrase family protein [Brachyspira murdochii DSM 12563]
          Length = 382

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 109/234 (46%), Gaps = 14/234 (5%)

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL--NMRNLKKSNSLPR- 127
           +  +IS +   ++    +   ++ +KS+LK+L K+KI  E+ IL     ++K+   + + 
Sbjct: 82  LEKYISYQTEHQLSSDIINCRINVVKSYLKFLHKKKII-EAKILIDTFDDIKRPKPIIKE 140

Query: 128 --ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
              +   Q L ++  +   TS E+ + + RN  ++ L+   G+R  E   +  +NI  + 
Sbjct: 141 QLVIKANQTLDIIKKIE-RTSKES-FTNQRNILMMLLMSNTGIRRKETAGIDIRNINLEN 198

Query: 186 STLRI-QGKGDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPG 241
            T+ I + KG K RIV     ++  +++Y    D       +  Q  LF    G+ L   
Sbjct: 199 KTITIYKTKGSKPRIVVFSDMIKDVLIDYIAERDEILRKNKIKEQNNLFIKNNGQDLAIE 258

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                +R + +   + +  T H+ R  FAT +  +G +   I  ++GH  ++TT
Sbjct: 259 TMTMIMRVISKRNKVKI--TCHSFRRGFATDMAESGTETYLISKMMGHSNINTT 310


>gi|229113526|ref|ZP_04242975.1| Phage integrase [Bacillus cereus Rock1-15]
 gi|229162106|ref|ZP_04290078.1| Phage integrase [Bacillus cereus R309803]
 gi|228621357|gb|EEK78211.1| Phage integrase [Bacillus cereus R309803]
 gi|228669944|gb|EEL25338.1| Phage integrase [Bacillus cereus Rock1-15]
          Length = 351

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 126/295 (42%), Gaps = 57/295 (19%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T Q Y  D   FL ++      K  I TI++LS+ ++  +  +  ++K    +L++ 
Sbjct: 66  SERTKQQYLHDLSHFLRYI------KEAIGTIQELSHNDVEIYFYEL-SKKYAATTLRKK 118

Query: 92  LSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVD-----NVLLH 144
            + ++ FLKY+      ++  S+ L   ++KK   + R L  ++   ++D     N  ++
Sbjct: 119 KTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLYPEEVTQILDELKKSNYFVY 178

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIV 200
           T+              +LL   GLRI E  +    +++   S     LR+ GKG+K R V
Sbjct: 179 TA-------------FFLLTTTGLRIEEIATAKWADLVFHSSLNAYLLRVVGKGNKSREV 225

Query: 201 PLLPSVRKAILEYYDL----CPFDL-NLNIQLPLFRG--IRGKPLNPGV----------F 243
            +      A+     L       D  N +  LP   G   R   L+  V          F
Sbjct: 226 RIFEDTLDALCHVRSLRKQTTKLDASNTSAFLPKADGSNYRADYLSSLVAKKIEETNLTF 285

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            RY RQ R         T HT RH  A +L+  G +L+ I+  LGH  + TT+ Y
Sbjct: 286 LRY-RQDR--------ITPHTCRHFMANYLMEKGIELKKIRDYLGHESIMTTERY 331


>gi|228470638|ref|ZP_04055494.1| integrase [Porphyromonas uenonis 60-3]
 gi|288801873|ref|ZP_06407315.1| integrase [Prevotella melaninogenica D18]
 gi|299143044|ref|ZP_07036165.1| integrase [Prevotella oris C735]
 gi|228307646|gb|EEK16625.1| integrase [Porphyromonas uenonis 60-3]
 gi|288335915|gb|EFC74348.1| integrase [Prevotella melaninogenica D18]
 gi|298575495|gb|EFI47380.1| integrase [Prevotella oris C735]
          Length = 417

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 110/262 (41%), Gaps = 31/262 (11%)

Query: 53  YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
           Y  E I +Q        ++  + +K +  K+   +    LS + S LK L KR I     
Sbjct: 153 YRVEDIPVQKADIAFIKDLEDYFAKEKGFKLNTSA--GYLSMLASLLKDLHKRHIIDTYP 210

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRI 170
            +N  +++     PR +  ++        L+    E K       +    L+ C  GL  
Sbjct: 211 FIN-HSIRWEVGTPRYITREEV------GLIAALGEDKLQGYEKVSRDMFLFSCLTGLSY 263

Query: 171 SEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           ++   LT Q++  +     I+    K   +  +PLLP    AI+E Y          I  
Sbjct: 264 TDVYHLTEQHVFHEAGMTWIRKPRIKTGNVCHIPLLPEA-TAIIERYR--------GIHT 314

Query: 228 PLFRGIRGK----PLNPGV--FQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDL 280
             FR    K    P+ PG      +++++ R  G+  + T H  RH+FA+ + LS G  +
Sbjct: 315 RAFRHEPPKGYLLPI-PGCDTVNIHLKKIARLCGIQKTLTYHMARHTFASQMTLSEGVSI 373

Query: 281 RSIQSILGHFRLSTTQIYTNVN 302
            S+  +LGH ++ TTQ+Y   +
Sbjct: 374 ESVSKMLGHSQIKTTQVYAETS 395


>gi|167772802|ref|ZP_02444855.1| hypothetical protein ANACOL_04184 [Anaerotruncus colihominis DSM
           17241]
 gi|167665280|gb|EDS09410.1| hypothetical protein ANACOL_04184 [Anaerotruncus colihominis DSM
           17241]
          Length = 402

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-T 294
           KP+ P     +++++ R  GLP +   H LRH+FATH L++G D +++  ILGH   S T
Sbjct: 298 KPVRPSAAYYWMKRILREAGLP-TIRFHDLRHTFATHALTSGVDAKTLSGILGHTNASFT 356

Query: 295 TQIYTNVN 302
              YT+V 
Sbjct: 357 LDTYTHVT 364


>gi|260438382|ref|ZP_05792198.1| site-specific recombinase, phage integrase family [Butyrivibrio
           crossotus DSM 2876]
 gi|292808968|gb|EFF68173.1| site-specific recombinase, phage integrase family [Butyrivibrio
           crossotus DSM 2876]
          Length = 349

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 124/289 (42%), Gaps = 28/289 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLA-----FYTEEKITIQTIRQLSYTEIRAFISKRRTQK---- 82
           S  T+  Y  D R +  F+A       +   +T+  + +++  +I+ ++S  R+ K    
Sbjct: 40  STATMLEYAYDVRSYFKFIAAGNPLINSYHDVTLDILDKMTPRDIQEYMSYLRSHKDESG 99

Query: 83  ---IGDRSLK-RSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSLPRALNEKQALT 136
                D + + R LS ++SF +Y        +  + +++   L +    PR  +E+    
Sbjct: 100 RIVTNDANARARKLSSLRSFYQYYFAFAGLHSNPAKLISSPKLHQKKQ-PRLDSEEIKEL 158

Query: 137 LVDNVLLHTSHETKWIDA-----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           L D + +    + K   A     R++AI+ LL G G+R+SE + +   +I  + ++++I 
Sbjct: 159 LTDVITVGALDDNKRPYAIRSNLRDTAIIALLGGTGIRVSELVGIDLNDIDWEHNSIKIV 218

Query: 192 GKGDKIRIVPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYI 247
            KG    IV     + K + +Y D    P D   N    LF   RG  K L     +R +
Sbjct: 219 RKGGNEDIVYFGEEISKYMADYIDNERKPGDKKEN---ALFVASRGEKKRLTVRSVERIV 275

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            +           + H LR +F T+      DL ++   LGH  +  T+
Sbjct: 276 SKYSAASIPSKKISPHGLRRTFGTNYYEATSDLYAVADALGHKNIQVTK 324


>gi|28377767|ref|NP_784659.1| integrase [Lactobacillus plantarum WCFS1]
 gi|28270600|emb|CAD63504.1| integrase [Lactobacillus plantarum WCFS1]
          Length = 305

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 70/143 (48%), Gaps = 11/143 (7%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQG----KGDKIRIVPLL--PSVRKAILEYYD 215
           L+   G+R +EAL +TP +      TL I      K +K    P     SVRK  L++  
Sbjct: 140 LIAKTGIRFAEALGVTPDDFDFAHQTLSISKTWDYKSNKSDFAPTKNNSSVRKVPLDWQT 199

Query: 216 LCPFDLNLNIQLPLFRGI--RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
           +  F   L  +LP  + I  + K  N  V   Y+ +L ++  +P+  + H LRH+ A+ L
Sbjct: 200 VIQFS-QLTKKLPEDQPIFVQAKVYNDTV-NHYLERLCKHASIPV-ISVHGLRHTHASLL 256

Query: 274 LSNGGDLRSIQSILGHFRLSTTQ 296
           L  G  + S+   LGH  ++TTQ
Sbjct: 257 LYAGVSIASVARRLGHSNMTTTQ 279


>gi|294506796|ref|YP_003570854.1| Tyrosine recombinase xerD [Salinibacter ruber M8]
 gi|294343124|emb|CBH23902.1| Tyrosine recombinase xerD [Salinibacter ruber M8]
          Length = 315

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 22/224 (9%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S+   L+ ++ F +YL      TE+    ++  ++  +  R++  +  +  ++ V+    
Sbjct: 83  SVSTYLTALRRFCQYLTDVGELTENPATGVKGNRRPETHSRSVLTESDIEKLEAVV---- 138

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-----RIQGKGDKIRI-- 199
            +   ID R+ AI+ L+   GL     + +   ++ D + TL     R+QGKG +++   
Sbjct: 139 DDATQIDKRDHAIISLMLYAGL---SEIEIVRADVEDLEHTLMGPVLRVQGKGREVKDQE 195

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLF--RGIR--GKPLNPGVFQRYIRQLRRYLG 255
            PL P V +A+  Y D      +++ + PLF   G R  GK L     +  I    +  G
Sbjct: 196 APLDPPVLEAVEAYLDTRD---DVHPEDPLFVSHGHRSKGKRLQTRSVRSRINGYLKEAG 252

Query: 256 LPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +     T H+L H+ A   L++G  L  ++  + H  L TT IY
Sbjct: 253 IKRKGVTPHSLTHTAALLWLNDGMPLEEVKERMRHGTLDTTMIY 296


>gi|238764997|ref|ZP_04625934.1| Integrase [Yersinia kristensenii ATCC 33638]
 gi|238696766|gb|EEP89546.1| Integrase [Yersinia kristensenii ATCC 33638]
          Length = 334

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 27/152 (17%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           + ++ L    G R SEA SLT   +M  + T   + KG + R +P               
Sbjct: 195 ATVVRLCLATGARWSEAESLTHTQVMPYKVTY-TKTKGKRNRSIP--------------- 238

Query: 217 CPFDLNLNIQLPLFRGIRGKP--LNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHL 273
                   I   LF  +  K   L P  +  +   L+R  + LP    +H LRH+FA+H 
Sbjct: 239 --------ISEELFNSLPKKTGRLFPSCYSAFRTALKRTNIKLPDRQCSHVLRHTFASHF 290

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +  GG++  +Q ILGH  +  T  Y + + ++
Sbjct: 291 MMKGGNILVLQRILGHTDIKMTMRYAHFSPEH 322


>gi|116052949|ref|YP_793266.1| bacteriophage integrase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115588170|gb|ABJ14185.1| possible bacteriophage integrase [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 126

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 22/98 (22%)

Query: 234 RGKPLNPGVFQRYIRQLRRY------------------LGLPLSTTAHTLRHSFATHLLS 275
           R  P+ P + QR    LRRY                  + LP    +H LRH+FA+H + 
Sbjct: 12  RSVPIPPELEQRLHSHLRRYGKFSNCRDSFDFAVKMSGVALPRGQKSHVLRHTFASHFMM 71

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           NGG++ + Q ILGH  L+ T  Y ++      D++ E+
Sbjct: 72  NGGNILTRQKILGHSSLTLTMRYAHL----APDFLQEV 105


>gi|256027362|ref|ZP_05441196.1| integrase/recombinase [Fusobacterium sp. D11]
 gi|289765331|ref|ZP_06524709.1| integrase/recombinase [Fusobacterium sp. D11]
 gi|289716886|gb|EFD80898.1| integrase/recombinase [Fusobacterium sp. D11]
          Length = 328

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 11/158 (6%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL---RIQGKGDKIRIVPLLPSVRKAIL 211
           RN  ILY L+  G+R  E L+L  ++ +  ++      I+ K  K    P+  S+ K + 
Sbjct: 155 RNITILYTLFYTGMRSKELLTLQFKHYLKRENEYFFKLIETKSGKDVYKPIHKSLVKKLE 214

Query: 212 EY----YDLCPFDLNLNIQLPLFRG--IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           EY     ++   DL    +  +F    +   PL+       I+ + + +G  +S   H +
Sbjct: 215 EYKEYLMNMYSLDLKDLDKKYIFSTSVLNNSPLSYRSLNAIIQDMGKLIGKDIS--PHNI 272

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           RH+ AT L  +G D+  I+  LGH     T++Y N  S
Sbjct: 273 RHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARS 310


>gi|12084943|ref|NP_073236.1| Rsd [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|17233417|ref|NP_490521.1| resolvase [Salmonella typhimurium LT2]
 gi|60115476|ref|YP_209268.1| resolvase [Salmonella enterica subsp. enterica serovar Choleraesuis
           str. SC-B67]
 gi|71559012|ref|YP_271739.1| resolvase [Salmonella enterica]
 gi|161867892|ref|YP_001598073.1| Rsd [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|167995062|ref|ZP_02576152.1| Rsd [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|169647098|ref|YP_001716122.1| resolvase [Salmonella enterica subsp. enterica serovar Dublin]
 gi|198241686|ref|YP_002213875.1| Rsd [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|224504248|ref|YP_002635587.1| resolvase [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|261888697|ref|YP_003264384.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|305696866|ref|YP_003864181.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|12060313|dbj|BAB20519.1| Rsd [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|16445238|gb|AAL23456.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|45359300|gb|AAS58887.1| resolvase [Salmonella enterica subsp. enterica serovar Choleraesuis
           str. SC-B67]
 gi|68166311|gb|AAY88072.1| resolvase [Salmonella enterica]
 gi|161087271|gb|ABX56741.1| Rsd [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|169246231|gb|ACA51205.1| resolvase [Salmonella enterica subsp. enterica serovar Dublin]
 gi|197936202|gb|ACH73536.1| Rsd [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205327175|gb|EDZ13939.1| Rsd [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|224470957|gb|ACN48786.1| resolvase [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|261857283|emb|CBA11347.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|267990067|gb|ACY86464.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 14028S]
 gi|304376168|dbj|BAJ15330.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|312915724|dbj|BAJ39697.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|322712981|gb|EFZ04553.1| resolvase [Salmonella enterica subsp. enterica serovar Choleraesuis
           str. A50]
 gi|323133031|gb|ADX20460.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 4/74]
 gi|326621616|gb|EGE27962.1| Rsd [Salmonella enterica subsp. enterica serovar Dublin str. 3246]
 gi|327536763|gb|AEA95594.1| resolvase [Salmonella enterica subsp. enterica serovar Dublin]
 gi|332991453|gb|AEF10435.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. UK-1]
          Length = 260

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 94/223 (42%), Gaps = 48/223 (21%)

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL------------LYGCGLR 169
           S  LP A++   AL L    + H  +    +    SA+L+             L+  G R
Sbjct: 15  SALLPVAIDYPAALALRQMAMQHDDYPKYLLAPEVSALLHYVPDLHRRMLLATLWNTGAR 74

Query: 170 ISEALSLT-------PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           I+EAL+LT       P       +TL+ Q      R    +PS  +     + L P   N
Sbjct: 75  INEALALTRGDFSLAPPYPFVQLATLK-QRAEKAARTAGRMPSGSQP----HRLVPLSDN 129

Query: 223 ----------LNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG------------LPL 258
                       +++PL R  R  G+     +++   R +R ++G              +
Sbjct: 130 QYVSELQMMVATLKIPLERRNRRTGRTEKARLWEITDRTVRTWIGEAVEAAAADDVTFSV 189

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             T HT RHS+A H+L  G  L+ +Q+++GH  +S+T++YT V
Sbjct: 190 PVTPHTFRHSYAMHMLYAGIPLKVLQALMGHKSVSSTEVYTKV 232


>gi|302388220|ref|YP_003824042.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302198848|gb|ADL06419.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 368

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 134/305 (43%), Gaps = 45/305 (14%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++WL++  +   +   T +SY     +++I   F+ ++K      ++L+   +  F+   
Sbjct: 68  ESWLEDASLR--VKPSTYESYYRCMDKYVI--PFFKQDKS-----QKLTEESVLCFVKAM 118

Query: 79  RTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTES-NILNMRNLKKSNSLPRALNEKQALT 136
           R Q  + D S K++L+  K  LK + K   T E  +I+    + K +     +   +   
Sbjct: 119 REQPGLADSSRKKNLTIFKIALKEILKG--TPEGFSIIEQVKIPKPDDKEVMVFSLKEQR 176

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI------ 190
           L++   LH+       D R + I+   Y  G+R+ E  SL   +I  +  TL I      
Sbjct: 177 LIEQTALHSK------DKRAAGIILCFY-TGIRLGELCSLKWGDIDMEAGTLSIGRTVSR 229

Query: 191 -----QGKGDKIRIVPLLPSVRKAI---------LEYYDLCPFDLNLNIQLPLFRGIRGK 236
                +GK  K  ++   P  RK++         L+ +  C F           +G    
Sbjct: 230 IKDFEEGKS-KTALLVGAPKSRKSLRKIPLPEFLLKLFKECGFSHANPDHYIFSQG--DS 286

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT- 295
           P++P  FQ+  ++L +   +      H +RH+FAT  L  G D+++I  +LGH  +S T 
Sbjct: 287 PIDPRCFQKLYKKLLKEAHVQ-DRKFHAIRHTFATRALEMGVDVKTISELLGHSSVSITL 345

Query: 296 QIYTN 300
            +Y++
Sbjct: 346 NVYSH 350


>gi|187924023|ref|YP_001895665.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187715217|gb|ACD16441.1| integrase family protein [Burkholderia phytofirmans PsJN]
          Length = 422

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 74/173 (42%), Gaps = 30/173 (17%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSV 206
           AR+  +  L Y  G+RISE       +          DQ  L   GKG+K RIVP  P +
Sbjct: 224 ARSRWLTTLFYLQGMRISEVAGGKMGDFSRRLGADGKDQWWLETLGKGNKERIVPASPEL 283

Query: 207 RKAILEYY---DLCPFDLNLNIQLPL---FRGIRGKPLNPGVFQRYIRQL-------RRY 253
            + +  Y     L P     + + PL   FRG R + L+       I+ +        R 
Sbjct: 284 IQEMRLYRIENGLAPLPTR-SEETPLVIPFRG-RNRCLSRSAIHDAIKSIFGNAASWLRS 341

Query: 254 LGLPLS--------TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            G   S         +AH LRH+  +H    G DLR+I+  LGH  L+TT +Y
Sbjct: 342 KGAEFSDRADELERASAHWLRHTAGSHQADGGVDLRTIRDNLGHVSLNTTSLY 394


>gi|317130968|ref|YP_004097250.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
 gi|315475916|gb|ADU32519.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
          Length = 291

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 147/308 (47%), Gaps = 32/308 (10%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           LK   N+L++++     S+ T+ SY     QF  +L    +EK  I  +  ++  EI+A+
Sbjct: 4   LKGFNNYLEDMD----KSERTIVSYLNTISQFSNWL---IKEKF-IDDLSIVATREIKAY 55

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
             +   +K    ++ + L+ IK+F K++ +  I  E     ++ L+K +++     + Q 
Sbjct: 56  -RQILLEKYSPATVNQKLACIKTFYKFMTQTHIIKEDPAKYIK-LQKVDNI-----KSQY 108

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQ-G 192
           +T  + + + +  + K I A   AIL +L  CGLR SE  SLT   + +D + TL ++  
Sbjct: 109 MTRAEELRVMSKAKEKGIKA--YAILMVLLKCGLRPSELSSLTLDCLFLDKEPTLLVKDS 166

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL------PLFRGIRGKPLNPGVFQRY 246
           K +K R VP+     KA+  + D    + N + ++       +F   R   L     QR 
Sbjct: 167 KRNKSRYVPIPMDTCKALNAWID----ERNKSDKIYHTRSKYVFTSQRQDRLEVRAIQRV 222

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +  +    G+ L      LR ++A  L+ N    L ++ +++GH  + TT  YT +N ++
Sbjct: 223 VEVIGIEAGVELYCI--RLRATYANSLIQNANIPLSALATLMGHDSIQTTSRYTTINEQD 280

Query: 306 GGDWMMEI 313
              ++  I
Sbjct: 281 KRRYVNSI 288


>gi|317481431|ref|ZP_07940498.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902416|gb|EFV24303.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 385

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%)

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           P    +Y+R+++   G+    T H+ RHS AT  ++ G +L S+  ILGH  +++TQ+Y 
Sbjct: 308 PDNVAKYVRRIKDKAGIEKDFTYHSSRHSAATLAITAGAELYSVSKILGHGSIASTQVYA 367

Query: 300 NV 301
            V
Sbjct: 368 KV 369


>gi|288871476|ref|ZP_06410189.1| putative tyrosine recombinase XerC [Clostridium hathewayi DSM
           13479]
 gi|288863319|gb|EFC95617.1| putative tyrosine recombinase XerC [Clostridium hathewayi DSM
           13479]
          Length = 358

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 101/231 (43%), Gaps = 31/231 (13%)

Query: 85  DRSLKRSLSGIKSFLKYL--KKRKITTESNILNMRNLKKSNSLPRALNEKQALTL-VDNV 141
           +R + R +S +KSF  Y    +R +   + ++          LP+ L+EK+ + L VD V
Sbjct: 117 ERGIMRKISSLKSFFNYYYRNERLVNNPAALV---------QLPK-LHEKEIIRLDVDEV 166

Query: 142 LL---------------HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
            L                + HE   +  R+ A+L L+ G G+R+SE + L   ++     
Sbjct: 167 ALLLDEVEKGEALTEKQKSYHEKTKL--RDLALLTLMLGTGIRVSECVGLDIDDVDFKNG 224

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQR 245
            +RI  KG K   V     V  A+ +Y +     +     +  LF  ++ K L     + 
Sbjct: 225 GIRIHRKGGKEVTVYFGSEVEDALNDYLEERKMIIAEEGHESALFLSLQRKRLAVRSVEN 284

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            +++  R +      T H LR ++ T+L     D+  +  +LGH  ++TT+
Sbjct: 285 LVKKYARIVTPLKKITPHKLRSTYGTNLYKETNDIYLVADVLGHADVNTTK 335


>gi|268319286|ref|YP_003292942.1| bacteriophage integrase [Lactobacillus johnsonii FI9785]
 gi|262397661|emb|CAX66675.1| bacteriophage integrase [Lactobacillus johnsonii FI9785]
          Length = 390

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 82/181 (45%), Gaps = 39/181 (21%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-----GKGDKI-----------RIVPLLPS 205
           LL   GLR SEAL+LT Q+I  + +TL +      G G K            RI+P+  S
Sbjct: 205 LLSSTGLRKSEALALTWQDIDLNNNTLSVNKTLAYGLGGKTIIQSPKSPKSKRILPISDS 264

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRG------KP------LNPGVFQRYIRQLRRY 253
           +++ +++Y           +   LF  I+G      KP      +     Q  ++   +Y
Sbjct: 265 LKEVLIDYKQKQKI-----LSSKLFHTIKGTYLRMSKPDQWLNSIYAKDHQDKVKYAEKY 319

Query: 254 LGLPLST----TAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTT-QIYTNVNSKNGG 307
              PL      T H  RH+FAT L++      +++Q +LGH  +  T  IYT++N KN  
Sbjct: 320 NLNPLPDLKRITVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQMTLDIYTHINKKNTE 379

Query: 308 D 308
           D
Sbjct: 380 D 380


>gi|86157887|ref|YP_464672.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774398|gb|ABC81235.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 387

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 20/154 (12%)

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQ----------GKGDKIRIVPLLPSVRKAILEYYD 215
            GLR  E + L   +I     TL ++           KG+  R+VPL   +R A+L +  
Sbjct: 207 AGLRRGETIGLEWPDIDFQAGTLTVRRAVYRGVVGTTKGNAERVVPLTERLRDALLAHRH 266

Query: 216 LCPFDL-----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           L    +     + +I+  + R  R   L  G   +  +++ R+ GL      H LRH+F 
Sbjct: 267 LAGRRVLTGATDESIRSVMERLSRHAGLPAGTRMKRGKEVPRWAGL-----YHKLRHTFC 321

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           T L   G   R+IQ++ GH  + TT  Y +V+++
Sbjct: 322 TRLAMAGVPPRTIQALAGHVSIETTMRYMHVSAR 355


>gi|262042240|ref|ZP_06015407.1| resolvase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259040411|gb|EEW41515.1| resolvase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 259

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 97/227 (42%), Gaps = 48/227 (21%)

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL------------LYG 165
           ++    +LP A++   AL L    ++H       +    SA+L+             L+ 
Sbjct: 10  SISPGTALPVAIDYPAALALRQMAIVHDELPRYLLAPEVSALLHYVPDLHRKMLLATLWN 69

Query: 166 CGLRISEALSLT-------PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
            G RI+EAL+LT       P       +TL+ Q      R     P+  +A    + L P
Sbjct: 70  TGARINEALALTRGDFSLAPPYPFVQLATLK-QRAEKAARTAGRAPAGNQA----HRLVP 124

Query: 219 FD----------LNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYL----------GL 256
                       +   +++PL R  +  G+     ++Q   R +R +L          G+
Sbjct: 125 LSDHQYLSQLQMMVATLKIPLERRNKHTGRTEKARIWQITDRTVRTWLAEAVEAAAADGV 184

Query: 257 PLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             S   T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 185 TFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|194449832|ref|YP_002047249.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194408136|gb|ACF68355.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
          Length = 345

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 58/142 (40%), Gaps = 21/142 (14%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I+ +    G R  EA  L    I   + T  I+ KG + R +PL                
Sbjct: 201 IVKICLSTGARWGEAEKLKRSQITAGKITF-IKTKGKRNRTIPL---------------- 243

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
            D  +  +LP      G   +P  +       R  + LP     H LRH+FA+H + NGG
Sbjct: 244 -DTEIIAELP---KKNGALFSPCYYAFRSALARAGIDLPAGQLTHVLRHTFASHFMMNGG 299

Query: 279 DLRSIQSILGHFRLSTTQIYTN 300
           ++  +Q ILGH  +  T  Y +
Sbjct: 300 NILVLQKILGHTDIKMTMRYAH 321


>gi|168210502|ref|ZP_02636127.1| putative integrase/recombinase [Clostridium perfringens B str. ATCC
           3626]
 gi|170711397|gb|EDT23579.1| putative integrase/recombinase [Clostridium perfringens B str. ATCC
           3626]
          Length = 280

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 124/284 (43%), Gaps = 30/284 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N     E +RGL+  T + YE + + FL F+   T+++++      L   EI+  + K +
Sbjct: 7   NEFIRYEFDRGLTLETTKRYEREIKCFLKFIKIKTDKELS-----DLLEDEIKMCLKKYK 61

Query: 80  T----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                +K    ++   +  I  FL++ +   I  +   +    ++K   +   L+E + L
Sbjct: 62  MNLEKEKYKPSTINGKIIIINKFLRFCE---IEVKEKCVK---IQKKPYITNVLSESEYL 115

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+ NV           + R+  I+ +L   GLR+SE LSL  + I +    ++I+GKG 
Sbjct: 116 RLL-NV---------CDNFRDKVIIRVLANTGLRVSELLSLEIREIYN--GDIQIKGKGA 163

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R       + K I +Y +      +   +  +F G +G      + +   +  ++   
Sbjct: 164 KYRECFCSSEIIKLIKQYIETERLGTD---KSKVFTGRKGALKRQAINKMLFKYAKKAHI 220

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                  H+LRH F  +L      L  I++ +GH  + TT IYT
Sbjct: 221 KKEKAHPHSLRHLFGKNLAERRVSLDVIKTFMGHEDIRTTAIYT 264


>gi|282601462|ref|ZP_05981764.2| putative phage integrase [Subdoligranulum variabile DSM 15176]
 gi|282568976|gb|EFB74511.1| putative phage integrase [Subdoligranulum variabile DSM 15176]
          Length = 385

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 33/56 (58%)

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           +GKP++P  F R++R L    G P     HT+RH FAT+LL +G   +    +LGH
Sbjct: 288 KGKPIHPDSFSRHLRHLYDQNGFPEEYHLHTMRHFFATYLLEHGTSKQVAADLLGH 343


>gi|326943493|gb|AEA19386.1| Phage integrase [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 347

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 126/295 (42%), Gaps = 57/295 (19%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T Q Y  D   FL ++      K +I TI++LS+ E+  +  +  ++K    +L++ 
Sbjct: 62  SERTKQQYLHDLSHFLRYI------KESIGTIQELSHNEMEIYFYEL-SKKYAATTLRKK 114

Query: 92  LSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVD-----NVLLH 144
            + ++ FLKY+      ++  S+ L   ++KK   + R L  ++   ++D     N  ++
Sbjct: 115 KTIVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLYPEEVNQILDELKKSNYFVY 174

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIV 200
           T+              +LL   GLRI E  +    +++   S     LR+ GKG+K R V
Sbjct: 175 TA-------------FFLLTTTGLRIEEIATAKWADLVFHSSLNAYLLRVVGKGNKSREV 221

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQ-----LPLFRG--IRGKPLNPGV----------F 243
            +      A+     L      L+       LP   G   R   L+  V          F
Sbjct: 222 RIFEDTLDALCHVRSLRKQTTELDTSSTSAFLPKADGSNYRADYLSSLVAKKIEEINLDF 281

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            RY RQ R         T HT RH  A +L+  G +L+ I+  LGH  + TT+ Y
Sbjct: 282 LRY-RQDR--------ITPHTCRHFMANYLMEKGIELKKIRDYLGHESIMTTERY 327


>gi|294783592|ref|ZP_06748916.1| phage integrase family site-specific recombinase [Fusobacterium sp.
           1_1_41FAA]
 gi|294480470|gb|EFG28247.1| phage integrase family site-specific recombinase [Fusobacterium sp.
           1_1_41FAA]
          Length = 371

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 81/175 (46%), Gaps = 24/175 (13%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            ++Y  +  GLR+ E L+L   ++      L ++ + ++   +  +  V K   E+ DL 
Sbjct: 201 CLIYFTFFTGLRLGEVLALKWTDVKG--KILSVERQYNRTVTIKDI-GVSKLTYEFKDLK 257

Query: 218 PFDLNLNIQLP-----LFRGI----------RGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
             +    I LP     +  GI           GKP+     QR I  L + L L    + 
Sbjct: 258 TKNSKREIPLPDKALVILEGIPKTYELIFSDEGKPIERKRPQRRITALCKKLNLE-HRSF 316

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQ 316
           H++RHS+AT L      ++++QS++GH  + TT  IYT+V      D  MEI D+
Sbjct: 317 HSIRHSYATRLFELDVPIKTVQSLMGHSDMDTTMNIYTHVMQ----DKKMEIIDK 367


>gi|238750823|ref|ZP_04612321.1| Int [Yersinia rohdei ATCC 43380]
 gi|238710967|gb|EEQ03187.1| Int [Yersinia rohdei ATCC 43380]
          Length = 71

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 30/47 (63%)

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           LP     H LRH+FA+H + NGG++ ++Q ILGH  +  T  Y N++
Sbjct: 6   LPRGQATHVLRHTFASHFMMNGGNIIALQQILGHANIQQTMAYANLS 52


>gi|52079925|ref|YP_078716.1| lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme,
           catalytic core [Bacillus licheniformis ATCC 14580]
 gi|52785296|ref|YP_091125.1| hypothetical protein BLi01531 [Bacillus licheniformis ATCC 14580]
 gi|52003136|gb|AAU23078.1| Hypothetical Lambda integrase-like, N-terminal,DNA
           breaking-rejoining enzyme, catalytic core [Bacillus
           licheniformis ATCC 14580]
 gi|52347798|gb|AAU40432.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 352

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/292 (21%), Positives = 125/292 (42%), Gaps = 18/292 (6%)

Query: 24  NLEIERGLSKLTLQSYE--CDT-RQFLIFLAFYTE-EKITIQTIRQ-LSYT--EIRAFIS 76
           N+++  GL+K T+  Y   C++  +F       T  E I ++  RQ ++Y   E + F  
Sbjct: 33  NVKMSEGLTKETIDRYRRVCESVEEFAEIKGLSTSVESIDVEFARQYMTYILHEKKTFKG 92

Query: 77  KR------RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
            R      +T     +     L  +++   +  K  + +E+    +  +K+   + + L+
Sbjct: 93  HRYKPESVKTPGCSPKYANDHLKTMRAVFTFCIKENMISENPFQKINKVKQPEPVIQILS 152

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            ++        LL T ++ K+ + R+  ++  L     RI E ++L  +NI  + S + +
Sbjct: 153 VEEM-----KQLLKTPNKRKFSEFRDYVVMMCLINSMCRIGEIVTLEIENINFELSYIIL 207

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           + +  K R   ++P  +  +     L   +        +F    G  L    F++ +   
Sbjct: 208 EAQKTKTRKGRMIPLDKNTMQLLKKLLLRNTRFKPSKYVFITEEGTRLTTDNFRKRLADY 267

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               G+      H  RH+ A+  L  GGDLR +Q+I+GH  L     YT+++
Sbjct: 268 AHQAGINKRVHPHLFRHTAASMFLQAGGDLRHLQTIIGHKDLRMVLRYTHLS 319


>gi|229824886|ref|ZP_04450955.1| hypothetical protein GCWU000182_00235 [Abiotrophia defectiva ATCC
           49176]
 gi|229790889|gb|EEP27003.1| hypothetical protein GCWU000182_00235 [Abiotrophia defectiva ATCC
           49176]
          Length = 349

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 104/237 (43%), Gaps = 15/237 (6%)

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRAL 129
           IR +I         ++ +KR L  +++F KY  KK +I +  ++L         ++ R L
Sbjct: 94  IRYYIKDGEGHGNKEKGIKRKLVALRTFYKYYYKKERIKSNPSVLVDTPKLHDKAIVR-L 152

Query: 130 NEKQALTLVDNVLLH---TSHETKW---IDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
             ++   L+DN+      +S + K+      R+ AI+ LL   G+R+SE + +   +I  
Sbjct: 153 EPEEVANLLDNIESGDGLSSSQAKYHEKTSVRDLAIVTLLLSTGIRVSECVGIDLNDIDF 212

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLN 239
             + +++  KG    +V        A+  Y      +   D + N     F  I+ K ++
Sbjct: 213 KTNGIKVHRKGGYETVVYFGDEAETALKNYLKERQTIEAADGHKN---AFFLSIQKKRIS 269

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
               +  +++    +      T H LR ++ T L    GD+  +  +LGH  ++TT+
Sbjct: 270 VRAVEILVKKYSSLVTTIKKITPHKLRSTYGTSLYRETGDIYLVADVLGHKDVNTTK 326


>gi|150005337|ref|YP_001300081.1| integrase protein [Bacteroides vulgatus ATCC 8482]
 gi|149933761|gb|ABR40459.1| integrase protein [Bacteroides vulgatus ATCC 8482]
          Length = 407

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 69/157 (43%), Gaps = 35/157 (22%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------GDKIRIVPL---LP 204
           A L+  Y  GLR S+   LTP+N       +R+ GK          G +IR+ PL     
Sbjct: 237 AFLFCCY-TGLRYSDFCQLTPENF------IRVNGKRWLYFKSVKTGVEIRL-PLHLLFE 288

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           S    IL+ Y             P    +   P N  V  + +R+L    G+    T H 
Sbjct: 289 SRALGILDRY-------------PDIGSLVSLPCNSEV-NKQLRKLTGLCGIKKRITYHV 334

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            RH+ AT L+  G  + ++Q +LGH  + TTQIY+ V
Sbjct: 335 SRHTCATLLVHQGVAITTVQKLLGHTSVKTTQIYSEV 371


>gi|90421232|ref|ZP_01229131.1| integrase/recombinase [Aurantimonas manganoxydans SI85-9A1]
 gi|90334507|gb|EAS48293.1| integrase/recombinase [Aurantimonas manganoxydans SI85-9A1]
          Length = 318

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 115/269 (42%), Gaps = 27/269 (10%)

Query: 44  RQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102
           R    FLA+     +T I  +R L    + AFI +  T+K    + K+ LS I+    +L
Sbjct: 46  RAIGAFLAWCEAYGVTSITAVRSL---HVAAFIEEL-TRKRSAPTAKQQLSAIRMLFDWL 101

Query: 103 KKRKITTESNILNMRNLKKSNSLPRA----LNEKQALTLVDNVLLHTSHETKWIDARNSA 158
              ++   +   ++R    S+S+ R     L+  +A  L+D + + T         R+ A
Sbjct: 102 VVGQVVPVNPAASVRG--PSHSVRRGKTPVLDPTEARQLLDAIDVTTP-----AGLRDRA 154

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTL--RIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           ++ L+    +R+  AL +  +++      L  R+  KG K   +P   ++   +  Y D 
Sbjct: 155 LIGLMIYSFVRVGAALGMKVEDVYVQNRRLWVRLNEKGGKRHEMPCHHNLEGYLHSYLDG 214

Query: 217 CPFDLNLNIQLPLFRGI-RG------KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           C   +  + + PLFR I RG      KPL        I++     G+      HT R + 
Sbjct: 215 C--GIAEDCRGPLFRTIGRGTRELTTKPLAQANAYAMIQRRTAAAGIGTKIGNHTFRATG 272

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            T  L NGG L    ++  H    TTQ+Y
Sbjct: 273 ITAYLKNGGTLERAAAMANHASTRTTQLY 301


>gi|50955666|ref|YP_062954.1| phage-related integrase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50952148|gb|AAT89849.1| phage-related integrase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 312

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 56/119 (47%), Gaps = 18/119 (15%)

Query: 188 LRIQG-KGDKIRIVPLL----PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           L +QG KG K+R VPL+    P  ++A +      P  L       LF GI G  L  G 
Sbjct: 172 LILQGTKGRKLRHVPLIDALQPYAKEAAVAK---APDAL-------LFDGILGGRLTGGT 221

Query: 243 FQRYI--RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           F+R +    +R  LG P       LRH+FAT +L  G      + +LGH  L  T IYT
Sbjct: 222 FKRAVGWEMIRSVLGRP-DFKVKDLRHTFATMMLDAGVSANDTKDVLGHSSLQVTDIYT 279


>gi|332882853|ref|ZP_08450462.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332679173|gb|EGJ52161.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 409

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 20/150 (13%)

Query: 162 LLYGC--GLRISEALSLTPQNI-MDDQSTL---RIQGKGDKIRIVPLLPSVRKAILEYYD 215
            L+ C  G+  ++A+S+T  NI MDD   L    ++ K + +  V LLP     I +Y+ 
Sbjct: 253 FLFACYTGVPYADAVSITRDNIYMDDDGALWLKYLRKKNEYLAHVKLLPEAIGLIEKYHS 312

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
               +L   I  P  R             R+++ LR   G+      H  RH+F + + L
Sbjct: 313 DERKELFPMIHHPNMR-------------RHMKGLRDLAGIKSDLVYHMGRHTFGSLITL 359

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             G  + +I  +LGH  L+TTQ+Y  V  K
Sbjct: 360 EAGVPIETISKMLGHTNLATTQLYARVTPK 389


>gi|293368859|ref|ZP_06615463.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292636164|gb|EFF54652.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 397

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 9/139 (6%)

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           CGLR+S+   L   ++      +RI+ K  K +  PL   +    L++        + + 
Sbjct: 254 CGLRVSDIRKLKWSDLQKSGERIRIEIKMQKTK-EPLYLPISDEALKWLPQRGEAKDDDF 312

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
             PL         + G     +++  +  G+    + H  RH+ AT +L+ G DL ++  
Sbjct: 313 IFPL--------THEGTINNILQKWAKAAGVTKHISFHVARHTHATMMLTLGADLYTVSK 364

Query: 286 ILGHFRLSTTQIYTNVNSK 304
           +LGH  ++TTQIY  +  K
Sbjct: 365 LLGHKNIATTQIYAKIVDK 383


>gi|296126327|ref|YP_003633579.1| integrase family protein [Brachyspira murdochii DSM 12563]
 gi|296018143|gb|ADG71380.1| integrase family protein [Brachyspira murdochii DSM 12563]
          Length = 382

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 109/234 (46%), Gaps = 14/234 (5%)

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL--NMRNLKKSNSLPR- 127
           +  +IS +   ++    +   ++ +KS+LK+L K+KI  E+ IL     ++K+   + + 
Sbjct: 82  LEKYISYQTEHQLSSDIINCRINVVKSYLKFLHKKKII-EAKILIDTFDDIKRPKPIIKE 140

Query: 128 --ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
              +   Q L ++  +   TS E+ + + RN  ++ L+   G+R  E   +  +NI  + 
Sbjct: 141 QLVVKANQTLDIIKKIE-RTSKES-FTNQRNILMMLLMSNTGIRRKETAGIDIRNINLEN 198

Query: 186 STLRI-QGKGDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPG 241
            T+ I + KG K RIV     ++  +++Y    D       +  Q  LF    G+ L   
Sbjct: 199 KTITIYKTKGSKPRIVVFSDMIKDVLIDYIAERDEILRKNKIKEQNNLFIKNNGQDLAIE 258

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                +R + +   + +  T H+ R  FAT +  +G +   I  ++GH  ++TT
Sbjct: 259 TMTMIMRVISKRNKVKI--TCHSFRRGFATDMAESGTETYLISKMMGHSNINTT 310


>gi|27377249|ref|NP_768778.1| site-specific integrase/recombinase [Bradyrhizobium japonicum USDA
           110]
 gi|27350392|dbj|BAC47403.1| bll2138 [Bradyrhizobium japonicum USDA 110]
          Length = 414

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 102/231 (44%), Gaps = 18/231 (7%)

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNLKKSNSLPRALNEKQALTL 137
           T+++    +K     ++ +L++L  R +        + +    + +SLPR +      TL
Sbjct: 179 TKRVSLAYVKTMTMALRGYLRFLSARGLCRAGLDQAVPIIPQWRLSSLPRYIRSSDVETL 238

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +      T  +T     R+ AIL LL   GLR  + LSL   ++   Q+TL ++GKG + 
Sbjct: 239 I-----ATCDQTTATGVRDRAILLLLARLGLRAGDILSLRLTDVDWQQATLSVRGKGRRE 293

Query: 198 RIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNP----GVFQRYIRQLRR 252
             +PL      A+L Y D   P   ++ I       +   P+ P          +R   R
Sbjct: 294 TRLPLPQDAGDALLAYLDQARPHVADVRIFF-----MSNAPIRPLTGSSAVSDVVRSAIR 348

Query: 253 YLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             G+P+ S  A+ LRHS AT +L  G  L ++ ++L H     T  Y  V+
Sbjct: 349 KAGIPVPSNGANLLRHSAATAMLRGGATLDTVGAVLRHRSPDMTAHYAKVD 399


>gi|332885141|gb|EGK05392.1| hypothetical protein HMPREF9456_02593 [Dysgonomonas mossii DSM
           22836]
          Length = 480

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 22/148 (14%)

Query: 162 LLYGC--GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEY 213
            ++ C  GL   +  +L   NI    DD   L I GK +K  +   VPLL   ++ I +Y
Sbjct: 249 FIFSCFSGLAYIDVKNLRQSNIRTSFDD--GLWIMGKREKTGVNYNVPLLDIPKQIIEKY 306

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
               P D  L +       +  + +N      Y++++    G+  + + H  RH+FAT  
Sbjct: 307 SGKLPDDKALPV-------MSNQKMN-----EYLKEIGTICGIDKNLSYHLARHTFATLT 354

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           L+ G  + S+  +LGH  + TTQIY  +
Sbjct: 355 LTKGVSIESVSKMLGHTNIKTTQIYARI 382


>gi|318605374|emb|CBY26872.1| putative bacteriophage integrase [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 341

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 23/143 (16%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I+ +    G R SEA  L    +M ++ T  I  K  K R VP+   + K I        
Sbjct: 202 IVRICLATGARWSEAEQLRQAQVMPNKITY-INTKSKKNRTVPISAELHKLI-------- 252

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNG 277
                    P  +G     L    +  + + + R  L LP     H LRH+FA+H + NG
Sbjct: 253 ---------PKMKG----RLFANAYDAFGQAIDRAKLVLPTGQLTHVLRHTFASHFMMNG 299

Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300
           G++  +Q ILGH  +  T  Y++
Sbjct: 300 GNILVLQQILGHSTIQMTMRYSH 322


>gi|294776003|ref|ZP_06741499.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294450141|gb|EFG18645.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 429

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 22/153 (14%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDD----------QSTLRIQGKGDKIRIVPLLPSVRKA 209
            ++ C  GL  S+  +L+ +N++ D          +  L  + K   I  +PLLP V  A
Sbjct: 268 FVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRIKLEHRRKASSISNIPLLP-VPLA 326

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           ILE Y   P  +     LP+    +           Y++++  + G+  + T H  RH+F
Sbjct: 327 ILEKYREHPVCIKKGCCLPVMCNQK--------MNSYLKEIADFCGIKKNLTTHVARHTF 378

Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T + L+N   L+ +  +LGH     TQ Y  V
Sbjct: 379 GTTVTLANNVPLQDVSVMLGHASTRMTQHYARV 411


>gi|237743641|ref|ZP_04574122.1| predicted protein [Fusobacterium sp. 7_1]
 gi|229432672|gb|EEO42884.1| predicted protein [Fusobacterium sp. 7_1]
          Length = 414

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 78/179 (43%), Gaps = 34/179 (18%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-----GKGDKIRIV-------------P 201
            YLL   GLR SE L +T  NI  ++ +L ++        +KI +V             P
Sbjct: 221 FYLLIFLGLRKSELLGITIDNINFEEKSLYLEQSLIWDSENKIYVVNREMKSPLANRKFP 280

Query: 202 LLPSVRKAILEYYDLCPFD-------------LNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           L+P +   + E  +    D             LN N +  L     GK L        + 
Sbjct: 281 LIPILTDFLAERINRIKEDKTFFGNTYGIDKKLNFNAEGYLCIDREGKILRKFKLNYELD 340

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV-NSKN 305
           ++ + +GL    + H LRH+ AT + S G DL+ IQ  LGH  +STT  IY +  NSKN
Sbjct: 341 KILKKIGLE-HLSVHELRHTCATLMYSEGVDLKKIQYWLGHSNISTTANIYAHYDNSKN 398


>gi|254245075|ref|ZP_04938397.1| hypothetical protein PA2G_05961 [Pseudomonas aeruginosa 2192]
 gi|126198453|gb|EAZ62516.1| hypothetical protein PA2G_05961 [Pseudomonas aeruginosa 2192]
          Length = 178

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 62/147 (42%), Gaps = 29/147 (19%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +  L    G + SEA  L  Q +  +  T     K  K+R VP+   +   +  ++    
Sbjct: 38  VTLLCLATGAQWSEAEKLPAQRLQGNVVTY-AGTKSGKVRHVPIPAELADRVRAHW---- 92

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-----GLPLSTTAHTLRHSFATHL 273
                             P++ G F   I   RR L      LP    +H LRH+FA+H 
Sbjct: 93  ------------------PMH-GPFTSCITSFRRALERTTIQLPQGQASHALRHTFASHF 133

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTN 300
           + NGG++ ++Q ILGH  L+ T  Y +
Sbjct: 134 MMNGGNILTLQKILGHSTLTMTMRYAH 160


>gi|51596109|ref|YP_070300.1| integrase [Yersinia pseudotuberculosis IP 32953]
 gi|51589391|emb|CAH21013.1| putative integrase [Yersinia pseudotuberculosis IP 32953]
          Length = 351

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 23/143 (16%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I+ +    G R SEA  L    +M ++ T  I  K  K R VP+   + K I        
Sbjct: 202 IVRICLATGARWSEAEQLRQAQVMPNKITY-INTKSKKNRTVPISAELHKLI-------- 252

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNG 277
                    P  +G     L    +  + + + R  L LP     H LRH+FA+H + NG
Sbjct: 253 ---------PKMKG----RLFANAYDAFGQAIDRAKLVLPTGQLTHVLRHTFASHFMMNG 299

Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300
           G++  +Q ILGH  +  T  Y++
Sbjct: 300 GNILVLQQILGHSTIQMTMRYSH 322


>gi|301311317|ref|ZP_07217244.1| transposase [Bacteroides sp. 20_3]
 gi|300830403|gb|EFK61046.1| transposase [Bacteroides sp. 20_3]
          Length = 411

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 22/153 (14%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDD----------QSTLRIQGKGDKIRIVPLLPSVRKA 209
            ++ C  GL  S+  +L+ +N++ D          +  L  + K   I  +PLLP V  A
Sbjct: 250 FVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRIKLEHRRKASSISNIPLLP-VPLA 308

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           ILE Y   P  +     LP+    +           Y++++  + G+  + T H  RH+F
Sbjct: 309 ILEKYREHPVCIKKGCCLPVMCNQK--------MNSYLKEIADFCGIKKNLTTHVARHTF 360

Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T + L+N   L+ +  +LGH     TQ Y  V
Sbjct: 361 GTTVTLANNVPLQDVSVMLGHASTRMTQHYARV 393


>gi|289645149|ref|ZP_06477170.1| integrase family protein [Frankia symbiont of Datisca glomerata]
 gi|289505044|gb|EFD26122.1| integrase family protein [Frankia symbiont of Datisca glomerata]
          Length = 366

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 68/161 (42%), Gaps = 27/161 (16%)

Query: 155 RNSAILYLLYGCGLRISEALSL-------TPQNIMDDQSTLRIQGK-----------GDK 196
           R  A++ L    GLR  E + L       T   +   ++ + + GK           G +
Sbjct: 181 RYRALVLLAAYTGLRWGECVGLRWTRVDLTAAELTVVETAVEVSGKISVKPYPKTEAGRR 240

Query: 197 -IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR-QLRRYL 254
            + I PLL +  +   E     P DL       +F    G PL    F+RY+    R   
Sbjct: 241 TVPIPPLLVAYLRRHREIVPPAPDDL-------VFPDTVGHPLRRSNFRRYVWVPARGKA 293

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           GLP S T H LRH +AT L+S G  +  +Q  LGH   STT
Sbjct: 294 GLPTSLTFHALRHCYATWLISEGVPVNVVQVALGHEHASTT 334


>gi|257894525|ref|ZP_05674178.1| site-specific recombinase [Enterococcus faecium 1,231,408]
 gi|314949949|ref|ZP_07853247.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
 gi|257830904|gb|EEV57511.1| site-specific recombinase [Enterococcus faecium 1,231,408]
 gi|313643717|gb|EFS08297.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
          Length = 392

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 141/327 (43%), Gaps = 57/327 (17%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q W    E  R L++  + +Y+    Q  I   +  +EK++      LS  E++ F+   
Sbjct: 66  QKWF---EYYRSLNEQKIATYDKREEQVEILNRWIGDEKLS-----SLSSEELQKFLFIL 117

Query: 79  RTQKI-------GDRSLKRSLSGIKSFLKYLKKRKITTESNI---------LNMRNLKKS 122
           + + I          SL+  +  +    KY  K+ +T E+ +         L +++LK+S
Sbjct: 118 KEKGINGVDVGYAKNSLQSLVQVLNMIFKYCMKKNLTNENPMKFVKMPKYQLTVKDLKES 177

Query: 123 -NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
            NSL     E + LT VD +    ++   + +   S + ++L+  G R+SEAL+L PQ+I
Sbjct: 178 VNSL-----EDKFLT-VDELRTFLNYGIIYEELPMSVLFHVLFYTGCRVSEALALQPQDI 231

Query: 182 MDDQSTL------RIQGKGDKIRI-----------VPLLPSVRKAILEYYD-LCPFDLNL 223
             +++ +       ++GK    RI           VP+ P V + + E  D L     N 
Sbjct: 232 DFERNEILFYKQTAVKGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRNS 291

Query: 224 NIQLP-------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
           N  +        L  G RG P        ++++     G+      H  RH+ A+ L++ 
Sbjct: 292 NFVVDETYLFVYLDPGKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMAS-LVAE 350

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNS 303
                 ++  LGH   +T++IY ++ S
Sbjct: 351 YCSWDVLKDRLGHTDSTTSKIYRHLTS 377


>gi|240047536|ref|YP_002960924.1| Tyrosine recombinase xerC [Mycoplasma conjunctivae HRC/581]
 gi|239985108|emb|CAT05101.1| Tyrosine recombinase xerC [Mycoplasma conjunctivae]
          Length = 326

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/254 (21%), Positives = 116/254 (45%), Gaps = 31/254 (12%)

Query: 61  QTIRQLSYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           + I ++   ++R ++S    K  + K+   +++R LS   SF  +L+      +S +  +
Sbjct: 85  KQINEIETNDLRNYLSNYQYKNNSSKVTIDNIRRILS---SFFSWLEDENYIVKSPVRRI 141

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           + +K   ++    ++++   + DNV           + R+ A++ +L   G+R+ E + L
Sbjct: 142 KKVKAPITVKETYSDEELEIMRDNVN----------NYRDLALIDILASTGMRVGELVKL 191

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN----LNIQLPLFR- 231
             +++  ++    + GKG+K RIV      +  + +Y D    D N    ++++LP  R 
Sbjct: 192 NIEDVDFNERECIVVGKGNKQRIVYFDARTKIHLKKYLD-SRVDKNKSLFVSLKLPYGRI 250

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
            I G        +  +R++ + L +      H  R + AT  +  G  +  +Q +LGH +
Sbjct: 251 SING-------IESRLRKIGKDLNIK-KVHPHKFRRTLATIAIDKGMPIEQVQRLLGHEK 302

Query: 292 LSTTQIYTNVNSKN 305
           + TT  Y  V   N
Sbjct: 303 VDTTLKYAMVKQSN 316


>gi|330998383|ref|ZP_08322207.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329568489|gb|EGG50294.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 391

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           G+  S T HT RH+FAT LL+ G DL ++  +LGH ++  TQIY  +
Sbjct: 328 GIAKSVTYHTARHTFATMLLTLGADLYTVSKLLGHSQIKNTQIYAEI 374


>gi|319641880|ref|ZP_07996555.1| integrase [Bacteroides sp. 3_1_40A]
 gi|317386499|gb|EFV67403.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 412

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 115/262 (43%), Gaps = 31/262 (11%)

Query: 53  YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
           Y  E I IQ        E+  + +K +  K+   +    LS + S LK L KR +  E+ 
Sbjct: 148 YHMEDIPIQKADITFVKELEEYFAKEKEFKLNTSA--GYLSMLASLLKDLYKRHVI-ETY 204

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRI 170
                +++     PR + +++   +V   L     ++  + +R+      L+ C  GL  
Sbjct: 205 PFIAHSIRWDVGTPRYITKEEVGRIV--ALSEKDLQSYELVSRD----MFLFSCYTGLSY 258

Query: 171 SEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           ++    T ++++++     I+    K   I  +PLLP    AI+E Y          I  
Sbjct: 259 TDIYHFTTEHLVEEDGMTWIRKPRVKTGNICYIPLLPEA-SAIIERYR--------GIHT 309

Query: 228 PLFRGIRGK----PLNPGV--FQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDL 280
             FR    K    P+ PG      +++++ R  G+    T H  RH+FA+ + LS G  +
Sbjct: 310 RAFRHEPPKGYLLPI-PGCDTVNIHLKKIARLCGITKKLTFHMARHTFASQMTLSEGVSI 368

Query: 281 RSIQSILGHFRLSTTQIYTNVN 302
            S+  +LGH ++ TTQ+Y   +
Sbjct: 369 ESVSKMLGHSQIKTTQVYAETS 390


>gi|268319484|ref|YP_003293140.1| site-specific tyrosine recombinase XerS [Lactobacillus johnsonii
           FI9785]
 gi|262397859|emb|CAX66873.1| site-specific tyrosine recombinase XerS [Lactobacillus johnsonii
           FI9785]
          Length = 356

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 147/349 (42%), Gaps = 54/349 (15%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYT 54
           ME N   E++  EL     ++++   +    S  T   Y  + R+F  +L      +  +
Sbjct: 1   METNKYLELIKQEL-ANMPDFVKEYNLGTSHSLTTTYQYLTEIRRFFDWLRQNNIASISS 59

Query: 55  EEKITIQTIRQLSYTEIRAFISK-RRTQKIGDR-----SLKRSLSGIKSFLKYLKKRKIT 108
            ++I + T+  L   ++  +I   + T+    R     ++ RS++ ++S  K+L    IT
Sbjct: 60  NKEIEVTTLENLQRNDVMLYIHHLKHTKNQQGRLNSPTTINRSINALRSLYKFLT---IT 116

Query: 109 TESN----ILNMRNLKKSNSL--PRALNEK---------------QALTLVDNVLLHTSH 147
           +++N      +   + K NSL   + LN +               Q L  ++N  +H  +
Sbjct: 117 SDNNHGEPYFDRNVMLKINSLNDTKTLNYRAHVLESHMYMGDLKYQFLDFIENEYVHKCN 176

Query: 148 ET-----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG---DKIRI 199
           +      K    R+ AI+ L+ G G+R+SE + +  +NI    + L +  KG   D + I
Sbjct: 177 KQSLPAFKKNHERDMAIIALILGTGIRVSECVGVNMRNINLKDAMLDVTRKGGQKDSVPI 236

Query: 200 ----VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
               +P L   R+   + Y     D      L  + G + K +     ++ + +     G
Sbjct: 237 AAWTIPYLKKYREIRADRYHAEKEDTAF--FLTRWHG-KTKRITTNAVEKMVNKYSAAFG 293

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            PL  T H LRH+ A+ L     D   +   LG    + T +YT+V+ K
Sbjct: 294 KPL--TPHKLRHTLASELYEVTKDQVLVAQQLGQKGTTATDLYTHVDQK 340


>gi|239905519|ref|YP_002952258.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239795383|dbj|BAH74372.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 362

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 15/142 (10%)

Query: 162 LLYGCGLRI--SEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCP 218
           + +  G+R   SE L+LT  +I  D S++++   K    R++P+ P       E+ D   
Sbjct: 193 VAWNLGVRTGESELLALTWNDIDWDDSSIKVYATKTKTTRVIPIAP-------EFLDRLQ 245

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
             +    Q       +GKPL    F+R ++      GL      + +RH FAT LL  GG
Sbjct: 246 L-MREKAQTGYIIEYQGKPLRK--FRRSLKTAAEKAGLTYPVVMYDIRHLFATTLLREGG 302

Query: 279 DLRSIQSILGH--FRLSTTQIY 298
           D+ ++  ++GH   +++  Q Y
Sbjct: 303 DVAAVSKLMGHASVKMTVDQYY 324


>gi|208703309|ref|YP_002267578.1| integrase/recombinase [Bacillus cereus H3081.97]
 gi|208658164|gb|ACI30531.1| integrase/recombinase [Bacillus cereus H3081.97]
          Length = 319

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 97/217 (44%), Gaps = 8/217 (3%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTES---NILNMRNLKKSNSLPRALNEK-QALTLVDNVL 142
           +++  ++ +K F  YL +  +   +   N  N+R +K+S       +EK + L  V++  
Sbjct: 83  TIRLRVNCVKDFFSYLYEENVIESNPAKNFKNVRYVKESQVRWLTHDEKNRLLRYVEDPK 142

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
           L   +E  W   RN AI+ ++   GLR SE  +L  ++ +D+   L    KG K R +P+
Sbjct: 143 LIIKNE--WRGYRNLAIINIMLLAGLRASEVSNLKLED-LDNGFILIRSSKGLKGRKLPI 199

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
              + K + ++ ++       +    +F   RG         +    L +  G+    + 
Sbjct: 200 NHDLGKVLNKWLNVRNEKEQFSDSQYVFLSQRGSKFTEMGLTKLFITLEKKTGIE-GLSP 258

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           HTLRH+F   L+  G  +  I    GH  + TT IY 
Sbjct: 259 HTLRHTFCHDLVEKGTPIHIIADYAGHSSVKTTMIYV 295


>gi|303236540|ref|ZP_07323125.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483288|gb|EFL46298.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 418

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 34/63 (53%)

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           NP    R +R      G+    + H  RH+FAT  L+NG D+ ++  +LGH  + TTQ+Y
Sbjct: 335 NPSWISRPLRAWIEKAGIQKHLSFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVY 394

Query: 299 TNV 301
             V
Sbjct: 395 AKV 397


>gi|281426208|ref|ZP_06257121.1| mobilizable transposon, int protein [Prevotella oris F0302]
 gi|281399784|gb|EFB30615.1| mobilizable transposon, int protein [Prevotella oris F0302]
          Length = 418

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 34/63 (53%)

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           NP    R +R      G+    + H  RH+FAT  L+NG D+ ++  +LGH  + TTQ+Y
Sbjct: 335 NPSWISRPLRAWIEKAGIQKHLSFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVY 394

Query: 299 TNV 301
             V
Sbjct: 395 AKV 397


>gi|160936910|ref|ZP_02084274.1| hypothetical protein CLOBOL_01799 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440100|gb|EDP17847.1| hypothetical protein CLOBOL_01799 [Clostridium bolteae ATCC
           BAA-613]
          Length = 290

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 73/154 (47%), Gaps = 9/154 (5%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           + R S +L  +   G+RISE LS    N +D Q    +  KG KIR V L   + + +  
Sbjct: 123 NERLSLLLQTVCSTGIRISE-LSFITVNAVDKQ-VAEVDCKG-KIRTVFLTNGLCRLLKA 179

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFAT 271
           Y        N+ I   +F    GKP++     R ++Q+    G+ P     H LRH FA 
Sbjct: 180 Y----ARKRNI-ISGMIFVTRSGKPMDRSNIWREMKQISHKAGVNPDKVFPHNLRHLFAR 234

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
              S   DL  +  ILGH  ++TT+IYT  + +N
Sbjct: 235 VYYSQEKDLVRLADILGHSSVNTTRIYTMESGEN 268


>gi|116669557|ref|YP_830490.1| phage integrase family protein [Arthrobacter sp. FB24]
 gi|116609666|gb|ABK02390.1| phage integrase family protein [Arthrobacter sp. FB24]
          Length = 400

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 67/150 (44%), Gaps = 13/150 (8%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV----RKAI 210
           R+ A++      G R SE L +T   +      + +  KG +++ +P  P      R   
Sbjct: 215 RDRALVAFYVSSGARASELLGITGDRVNVGDQLIGVYRKGGQLQWLPAAPDAFVWLRLYQ 274

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSF 269
           LE     P +       P++  +RG+P  P  ++     LRR   L  S  T H LRH+F
Sbjct: 275 LEGGVAGPDE-------PVWLTLRGEP-RPLSYEAMCAVLRRCNDLLGSNWTLHDLRHTF 326

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           A   L  G  L  +Q +LGH  L+TT +Y 
Sbjct: 327 AIRALEGGMGLHEVQQLLGHQSLTTTTVYA 356


>gi|253700090|ref|YP_003021279.1| integrase family protein [Geobacter sp. M21]
 gi|251774940|gb|ACT17521.1| integrase family protein [Geobacter sp. M21]
          Length = 334

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 103/226 (45%), Gaps = 38/226 (16%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++ R L+ +K+ L+Y ++          +++  K+S    R ++ ++   +V N+L  T 
Sbjct: 124 TVNRYLATVKTLLRYHRQ-------PWEHIQLKKESKGRIRVISREEEAMVV-NLLRDTD 175

Query: 147 HETKWIDARNSA-ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLP 204
           H ++ +     A ++ +L   G R+SE L+L  ++I  D + + +   KGDK R +P+  
Sbjct: 176 HGSRRLYFPEVADLVEVLADTGCRLSEVLNLGYEDINFDTNLITVWINKGDKPRSIPMTN 235

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ--------RYIRQLRRYLGL 256
            V   IL+   +                  G PL P            +++R+     G 
Sbjct: 236 RV-GGILQARQV------------------GNPLKPFTIDIDKVETAWKWVRKKMGLAGD 276

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           P     H LRH+ AT L+  G DL +++  LGH  +  T+ Y ++N
Sbjct: 277 P-EFVPHALRHTTATRLIDGGIDLYTVKEWLGHSTIQVTERYAHLN 321


>gi|159898571|ref|YP_001544818.1| site-specific recombinase XerD-like protein [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159891610|gb|ABX04690.1| Site-specific recombinase XerD-like [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 81

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 37/60 (61%), Gaps = 7/60 (11%)

Query: 250 LRRYLGLPLST-------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           L R  GL ++T       T HTLRHS+ATHLL  G +LR IQ  LGH    TT +YT+V+
Sbjct: 6   LCRAFGLSVATCGIQQHATVHTLRHSWATHLLEAGVNLRIIQLWLGHRSPVTTALYTHVS 65


>gi|325270622|ref|ZP_08137220.1| phage integrase family integrase/recombinase [Prevotella
           multiformis DSM 16608]
 gi|324987017|gb|EGC19002.1| phage integrase family integrase/recombinase [Prevotella
           multiformis DSM 16608]
          Length = 330

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 105/255 (41%), Gaps = 51/255 (20%)

Query: 70  EIRAFISKRRTQKIGDR----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +IR ++S  + +++  R    +L+R  S   SF  +L+      +S +  +  ++  + +
Sbjct: 98  DIRNYLSDYQEERLSSRVTIDNLRRIFS---SFFAWLEDEDYIGKSPVRRIHKVRTESLV 154

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
              L+++    L D     T HE      R+ A++ LL   G+R+ E   +  ++I   +
Sbjct: 155 KEVLSDENMEVLRD-----TCHEI-----RDLAMIDLLASTGMRVGELAKMNREDIDFQE 204

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF-- 243
               + GKG+K R             E Y    F+    I L  +   R K  NP +F  
Sbjct: 205 RQCVVFGKGNKER-------------EVY----FNARTKIHLKRYLESR-KDNNPALFVS 246

Query: 244 -------------QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
                        +  +RQL R  G+      H  R + AT  +  G  +  +Q +LGH 
Sbjct: 247 LSSPHNRLTISGVEVRLRQLGRKAGIS-KVHPHKFRRTLATMAIDKGMPIEQVQKLLGHV 305

Query: 291 RLSTTQIYTNVNSKN 305
           ++ TT  Y  VN  N
Sbjct: 306 KIDTTLHYAMVNQTN 320


>gi|284038161|ref|YP_003388091.1| integrase family protein [Spirosoma linguale DSM 74]
 gi|283817454|gb|ADB39292.1| integrase family protein [Spirosoma linguale DSM 74]
          Length = 372

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 11/143 (7%)

Query: 167 GLRISEALSLTPQNIMDDQST-LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           GLR S+  +LT + I  D S+   I     K R V +LP    A+            L  
Sbjct: 231 GLRYSDIEALTWEQIRHDASSGYFIHFTQQKTRGVEVLPISELAV------ALLGTRLGD 284

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
             P+  G+    +    + + ++Q  +  G+    T H+ RH++AT  LS G D+ ++  
Sbjct: 285 SQPVLPGL----IYSAHWNKILKQWVKDAGITKPITFHSFRHTYATLQLSLGTDIYTVSK 340

Query: 286 ILGHFRLSTTQIYTNVNSKNGGD 308
           +LGH  L TTQIY  +  ++  D
Sbjct: 341 MLGHRELKTTQIYAKIVDQSKRD 363


>gi|150005370|ref|YP_001300114.1| putative phage integrase/recombinase [Bacteroides vulgatus ATCC
           8482]
 gi|149933794|gb|ABR40492.1| putative phage integrase/recombinase [Bacteroides vulgatus ATCC
           8482]
          Length = 368

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 107/248 (43%), Gaps = 23/248 (9%)

Query: 52  FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111
           +YT  K   + + +++    + FI     + +  ++++  ++ ++ F K+LKK     E 
Sbjct: 125 YYTSLKQYFEYVNEINMENCKRFIRTLEEKSLSPQTIRLRITALEKFSKWLKK---PIEL 181

Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
               M+     N++P    E++   L+D   L T     +        + +L   G R+S
Sbjct: 182 KRPKMKRKLDVNNVP---TEEEYNRLLD--FLKTKSNKDYY-----FFIKVLGTTGARLS 231

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           E    T ++I+  + TLR  GKG+K R       +++    Y          + +  +F 
Sbjct: 232 EFQQFTWEDIISGEVTLR--GKGNKYRRFFFQKQLQQEAKAY-------AKEHGKTGIFA 282

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             R  P+    F ++++   ++ G+      AH  RH FA   L    D+  +  +LGH 
Sbjct: 283 VGRFGPITQRGFSQHLKAWGKHCGIDSRKMHAHAFRHFFAKMFLKKNKDVIQLADLLGHG 342

Query: 291 RLSTTQIY 298
            + TT+IY
Sbjct: 343 SVDTTRIY 350


>gi|145300732|ref|YP_001143573.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853504|gb|ABO91825.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 353

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 2/58 (3%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           F++ IR  R  + LP+  + H LRH+FA+H + NGG++  +Q ILGH  +  T  Y++
Sbjct: 265 FEKAIR--RANIKLPVGQSTHVLRHTFASHFMMNGGNILVLQRILGHTDIKMTMRYSH 320


>gi|138895610|ref|YP_001126063.1| putative integrase/recombinase [Geobacillus thermodenitrificans
           NG80-2]
 gi|196249622|ref|ZP_03148319.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|134267123|gb|ABO67318.1| Putative integrase/recombinase [Geobacillus thermodenitrificans
           NG80-2]
 gi|196210916|gb|EDY05678.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 197

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 14/162 (8%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI+YL    GLR+ E  +L   +I  +   LRI GKG K+R VP+   +   + E  
Sbjct: 34  RDRAIVYLFVYAGLRVEELSNLKLTDIDLEMRRLRIVGKGMKVRTVPISNIL---LAELQ 90

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPL------NPGVFQRYIRQLRRYLGLP-LSTTAHTLRH 267
           D   F   +  + P    +   P       +P    R I+++      P    T H  RH
Sbjct: 91  DWLAFRAEMAKKKP---HVEASPYVFYSQRSPKFSVRGIQRMVESYSPPGKKLTPHMFRH 147

Query: 268 SFATHLL-SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +F   +L +   D+  ++ + GH  ++TT  Y   +  +  D
Sbjct: 148 TFCKWMLKATNNDIEKVRRLAGHSHIATTSRYVKDSYSDLAD 189


>gi|126665716|ref|ZP_01736697.1| hypothetical protein MELB17_04087 [Marinobacter sp. ELB17]
 gi|126629650|gb|EBA00267.1| hypothetical protein MELB17_04087 [Marinobacter sp. ELB17]
          Length = 361

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 15/150 (10%)

Query: 159 ILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           I+ L    G R SE   LT +++    QS      K  + R  PL+     A+ E+  + 
Sbjct: 202 IVLLGITTGARRSELSGLTWRDVDFKRQSVTFHDTKNGETRAAPLVGPALHAMTEWAKVR 261

Query: 218 PFDLNLNIQLPLFRG----IRGKPLNPGVFQR-YIRQLRRYLGLPLSTTAHTLRHSFATH 272
           P    LN    +F G     + KPL+   FQR ++  L+R          H LRH+ A++
Sbjct: 262 P----LNDSSHVFSGRTEKTKNKPLD---FQRAWMTALKRAEVKDFRF--HDLRHTAASY 312

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           L  NG  LR I  ILGH  L+  Q Y+++ 
Sbjct: 313 LAMNGAGLREIAEILGHKTLAMVQRYSHLT 342


>gi|56475686|ref|YP_157275.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|56311729|emb|CAI06374.1| phage-related integrase [Aromatoleum aromaticum EbN1]
          Length = 294

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 101/225 (44%), Gaps = 16/225 (7%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M     P+  SF  L + Q + + L  +R +S  T+  Y      FL F A    +  T 
Sbjct: 1   MRNTATPKPPSFAALVQ-QFFTEYLVAQRAVSPRTVACYRDALMLFLDFAAQKLGKTPTA 59

Query: 61  QTIRQLSYTEIRAFI---SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
             +  L    I AF+      R   I  R+L+  L+ +++FLK+  +R      ++ ++ 
Sbjct: 60  LQLADLQPDMILAFLDHLEHERHNAIRTRNLR--LTAMRAFLKFAGRR------DVASLY 111

Query: 118 NLKKSNSLPRALNEKQA---LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            ++++ ++P    E+     LT  + V +       W   R+  +  LLY  G R+SE +
Sbjct: 112 VVERALAVPMKRFERPMVGFLTREEMVAVLGQPGATWSSQRDHLLFALLYNTGARVSEII 171

Query: 175 SLTPQN-IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
            +   + ++D  + + ++GKG K R VPL  +  + I  +  L P
Sbjct: 172 GVRVIDVVLDSAACVHLRGKGRKQRSVPLWKTTVQEIRAWLRLNP 216


>gi|332706105|ref|ZP_08426177.1| site-specific recombinase XerD [Lyngbya majuscula 3L]
 gi|332355197|gb|EGJ34665.1| site-specific recombinase XerD [Lyngbya majuscula 3L]
          Length = 341

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 14/128 (10%)

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRY 246
           +R++GK + IRIVPL P +   ++ Y +    +  +     PLF  +  +     + +R 
Sbjct: 203 IRVEGKRN-IRIVPLTPDLADLLMAYLEARAENGEVVKPSSPLFIAVGNRAGGKRISRRG 261

Query: 247 IR----------QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           IR           L++  G  +S  AH+LRH+  T  L +G +LR +Q +LGH    TT 
Sbjct: 262 IRLVVDSYLEQTNLKQTPGRTIS--AHSLRHTAGTLALRSGAELRQVQDLLGHADPRTTC 319

Query: 297 IYTNVNSK 304
           IY +V  +
Sbjct: 320 IYAHVADR 327


>gi|114762272|ref|ZP_01441730.1| putative integrase [Pelagibaca bermudensis HTCC2601]
 gi|114767357|ref|ZP_01446164.1| putative integrase [Pelagibaca bermudensis HTCC2601]
 gi|114767555|ref|ZP_01446308.1| putative integrase [Pelagibaca bermudensis HTCC2601]
 gi|114540384|gb|EAU43471.1| putative integrase [Roseovarius sp. HTCC2601]
 gi|114540561|gb|EAU43636.1| putative integrase [Roseovarius sp. HTCC2601]
 gi|114544890|gb|EAU47894.1| putative integrase [Roseovarius sp. HTCC2601]
          Length = 409

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 134/319 (42%), Gaps = 52/319 (16%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           +++   +  + + W+++   ERGL+  T+ +   + R+FL +  ++   +     +R L+
Sbjct: 107 KMLRHAICHDYETWMRD---ERGLADETIDARLREARRFLDW--YFG--RSGADGLRSLA 159

Query: 68  YTEIRAFISKRRTQKIGDR--SLKRSLSGIKSFLKYL--KKRKITTESNILNMRNLKKSN 123
             +I  ++  R    +G R  SL  S + ++S L+YL    R  T  S  +    L    
Sbjct: 160 VRDIDRYMDMR---AVGLRRISLAASAAWLRSLLRYLHLSGRVPTDLSPQVIGPMLYAYE 216

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            +P  L+  Q    +D VL  T+ +      R+ AIL +L   GLR  E  SL  ++I  
Sbjct: 217 DVPSILDRSQ----IDMVLKATARDRSPRGLRDHAILLMLAIYGLREGEICSLRLEDIDW 272

Query: 184 DQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY---------------DLCPFDLNLNIQL 227
              +LRI+  K +    +PLL  V  A+L+Y                 L P+    N   
Sbjct: 273 HADSLRIRHTKTNACSYMPLLTPVGDAVLDYLRLGRPQVESREVFIRSLAPYTRMKN--- 329

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSI 286
            L+  + G+    GV             +P+     H  RH+ A  LL      + I  +
Sbjct: 330 -LYGMVDGRLAAAGV-------------VPVGKRGPHVFRHARAVELLRASVPQKIIGDV 375

Query: 287 LGHFRLSTTQIYTNVNSKN 305
           LGH    +T  Y  + +++
Sbjct: 376 LGHRSTESTNAYLKLATED 394


>gi|191166265|ref|ZP_03028098.1| resolvase [Escherichia coli B7A]
 gi|190903692|gb|EDV63408.1| resolvase [Escherichia coli B7A]
          Length = 259

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 80/191 (41%), Gaps = 58/191 (30%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL- 211
           D R   +L  L+  G RI+EAL+LT               +GD   + P  P V+ A L 
Sbjct: 57  DLRRKMLLATLWNTGARINEALALT---------------RGD-FSLAPPYPFVQLATLK 100

Query: 212 -----------------EYYDLCPFD----------LNLNIQLPLFRGIR--GKPLNPGV 242
                            + + L P            +   +++P+ R  +  G+     +
Sbjct: 101 QRTEKAARTAGRMPVGQQTHRLVPLSDAWYVSQLQTMVATLKIPMERRNKRTGRTEKARI 160

Query: 243 FQRYIRQLRRYLG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
           ++   R +R ++G              +  T HT RHS+A H+L  G  L+ +QS++GH 
Sbjct: 161 WEVTDRTVRTWIGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHK 220

Query: 291 RLSTTQIYTNV 301
            +S+T++YT V
Sbjct: 221 SISSTEVYTKV 231


>gi|268592413|ref|ZP_06126634.1| type 1 fimbriae regulatory protein FimB [Providencia rettgeri DSM
           1131]
 gi|291312200|gb|EFE52653.1| type 1 fimbriae regulatory protein FimB [Providencia rettgeri DSM
           1131]
          Length = 185

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 6/173 (3%)

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIR 198
           N LL  + + ++ + R+  +L + +  GLR+SE   +T  +I   Q  + I+  KG    
Sbjct: 13  NSLLDATKQGRYPN-RDYCLLLMSFLHGLRVSELTHITMSDIDLVQKVIFIRRLKGGLST 71

Query: 199 IVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           + P++P    AI ++  L   D         LF   +G  ++     R   Q  +  GLP
Sbjct: 72  VQPIIPEEFNAIEKW--LVERDSWKTAGSDCLFISQKGSQISRYQIYRLFEQYGKIAGLP 129

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-GGDW 309
           +    H LRH+    L   G D R IQ  LGH  ++ T IYT  N K   G W
Sbjct: 130 VKLHPHMLRHACGYALADLGRDTRLIQDYLGHRNIAHTVIYTASNEKRFSGIW 182


>gi|50121562|ref|YP_050729.1| phage integrase [Pectobacterium atrosepticum SCRI1043]
 gi|49612088|emb|CAG75538.1| phage integrase [Pectobacterium atrosepticum SCRI1043]
          Length = 328

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 24/151 (15%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           +D  N   + +    G R  E  +L  ++I+++  T  ++ K  K R +P+ P++   I 
Sbjct: 180 LDGDNRKAVLVCLATGGRWGEVANLKCEHIINNMLTF-MKTKNGKRRTIPISPALMTQI- 237

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
             +    F     +  P +  +R   + + P               LP     H  RH+F
Sbjct: 238 -KHAKTGF-----VCHPNYDAVRNTLRAMKPD--------------LPDGQALHVFRHTF 277

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           ATH + NGG++ ++Q ILGH  +  T +Y +
Sbjct: 278 ATHFMMNGGNIITLQRILGHSTIQQTMVYAH 308


>gi|320527410|ref|ZP_08028592.1| site-specific recombinase, phage integrase family [Solobacterium
           moorei F0204]
 gi|320132267|gb|EFW24815.1| site-specific recombinase, phage integrase family [Solobacterium
           moorei F0204]
          Length = 307

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           KP+ P  ++ Y ++L + L +P     H+LRHSFAT  + +  D +++  +LGH  +STT
Sbjct: 226 KPIEPRTYRNYYKKLCKQLDIP-ELKFHSLRHSFATRCIESKADYKTVSVLLGHSNISTT 284


>gi|302345845|ref|YP_003814198.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302149964|gb|ADK96226.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 418

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 34/63 (53%)

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           NP    R +R      G+    + H  RH+FAT  L+NG D+ ++  +LGH  + TTQ+Y
Sbjct: 335 NPSWISRPLRAWIEKAGIQKHLSFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVY 394

Query: 299 TNV 301
             V
Sbjct: 395 AKV 397


>gi|190015183|ref|YP_001966733.1| putative integrase/recombinase [Bacillus cereus]
 gi|190015448|ref|YP_001967057.1| putative integrase/recombinase [Bacillus cereus]
 gi|218848491|ref|YP_002455116.1| phage integrase family protein [Bacillus cereus AH820]
 gi|116584859|gb|ABK00974.1| putative integrase/recombinase [Bacillus cereus]
 gi|116585129|gb|ABK01238.1| putative integrase/recombinase [Bacillus cereus]
 gi|218540542|gb|ACK92938.1| phage integrase family protein [Bacillus cereus AH820]
          Length = 347

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 126/295 (42%), Gaps = 57/295 (19%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T Q Y  D   FL ++      K  I TI++LS+ ++  +  +  ++K    +L++ 
Sbjct: 62  SERTKQQYLHDLSHFLRYI------KEAIGTIQELSHNDMEIYFYEL-SKKYAATTLRKK 114

Query: 92  LSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVD-----NVLLH 144
            + ++ FLKY+      ++  S+ L   ++KK   + R L  ++   ++D     N  ++
Sbjct: 115 KTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLYPEEVTQILDELKKSNYFVY 174

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIV 200
           T+              +LL   GLRI E  +    +++   S     LR+ GKG+K R V
Sbjct: 175 TA-------------FFLLTTTGLRIEEIATAKWADLVFHSSLNAYLLRVVGKGNKSREV 221

Query: 201 PLLPSVRKAILEYYDL----CPFDL-NLNIQLPLFRG--IRGKPLNPGV----------F 243
            +      A+     L       D  N +  LP   G   R   L+  V          F
Sbjct: 222 RIFEDTLDALCHVRSLRKQTTKLDASNTSAFLPKADGSNYRADYLSSLVAKKIEETNLTF 281

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            RY RQ R         T HT RH  A +L+  G +L+ I+  LGH  + TT+ Y
Sbjct: 282 LRY-RQDR--------ITPHTCRHFMANYLMEKGIELKKIRDYLGHESIMTTERY 327


>gi|296163972|ref|ZP_06846603.1| phage integrase family domain protein [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295900676|gb|EFG80051.1| phage integrase family domain protein [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 358

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 84/181 (46%), Gaps = 32/181 (17%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQ------------NIMDDQSTLRIQGKGDKIRIVP 201
           ARN A+  L+   GLRI+EA  L               N+   + + R   KG K R+VP
Sbjct: 166 ARNYAVARLVADVGLRINEARMLDLDDVRWELGRFGKLNVRHGKGSRR---KGPKPRVVP 222

Query: 202 LLPSVRKAILEYYD--LCPFDLNL-NIQLPLF----RGIRGKPL--NPGVFQRYI----- 247
           L+    +++  + +  L  FD++  N   PLF    + I G  +     V++R +     
Sbjct: 223 LINGADRSLQWFIEDVLGLFDVDPKNHAAPLFPSERKNIDGTCMRATADVYRRALAEATD 282

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           R L R+ G     T H LRH  A+ L   G +L +IQ +LGH    TT  Y +V++ +  
Sbjct: 283 RYLPRWSG---KLTPHVLRHFCASQLYLAGMNLFAIQELLGHAWTGTTARYIHVHATHVE 339

Query: 308 D 308
           D
Sbjct: 340 D 340


>gi|282882640|ref|ZP_06291251.1| phage integrase family protein [Peptoniphilus lacrimalis 315-B]
 gi|281297516|gb|EFA90001.1| phage integrase family protein [Peptoniphilus lacrimalis 315-B]
          Length = 327

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 112/251 (44%), Gaps = 25/251 (9%)

Query: 61  QTIRQLSYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           + ++++   +IR +++    K+++ K+   +++R LS   SF  +L+      +S +  +
Sbjct: 86  KDVKRIVTDDIREYLTEYQEKKKSSKVTIDNIRRILS---SFFSWLEDEDYILKSPVRRI 142

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             +K   ++    +++    + DN            + R+ AI+ +L   G+R+ E + L
Sbjct: 143 HKVKTGTNIKETYSDEALELMRDNC----------TELRDLAIIDMLASTGMRVGEMVLL 192

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG- 235
              +I  ++    + GKG K R+V    +  K  L+ Y     D N      LF  ++  
Sbjct: 193 NRNDIDFNERECIVFGKGSKERVV-YFDARTKIHLQNYLKSRTDDN----PALFVSLKSP 247

Query: 236 -KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            + L  G  +  +R+  + LGL      H  R + AT  +  G  +  +Q +LGH ++ T
Sbjct: 248 HERLKIGGVEVRLREYGKKLGLQ-KVHPHKFRRTLATMAIDKGMPIEQLQQLLGHRKIDT 306

Query: 295 TQIYTNVNSKN 305
           T  Y  V   N
Sbjct: 307 TLQYAMVKQSN 317


>gi|15808369|gb|AAL08410.1|AF252852_3 unknown [Prevotella loescheii]
          Length = 418

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 34/63 (53%)

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           NP    R +R      G+    + H  RH+FAT  L+NG D+ ++  +LGH  + TTQ+Y
Sbjct: 335 NPSWISRPLRAWIEKAGIQKHLSFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVY 394

Query: 299 TNV 301
             V
Sbjct: 395 AKV 397


>gi|323344390|ref|ZP_08084615.1| mobilizable transposon [Prevotella oralis ATCC 33269]
 gi|323094517|gb|EFZ37093.1| mobilizable transposon [Prevotella oralis ATCC 33269]
          Length = 418

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 34/63 (53%)

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           NP    R +R      G+    + H  RH+FAT  L+NG D+ ++  +LGH  + TTQ+Y
Sbjct: 335 NPSWISRPLRAWIEKAGIQKHLSFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVY 394

Query: 299 TNV 301
             V
Sbjct: 395 AKV 397


>gi|294794983|ref|ZP_06760118.1| putative site-specific recombinase, phage integrase family
           [Veillonella sp. 3_1_44]
 gi|294454345|gb|EFG22719.1| putative site-specific recombinase, phage integrase family
           [Veillonella sp. 3_1_44]
          Length = 357

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 94/222 (42%), Gaps = 42/222 (18%)

Query: 117 RNLKKSNSLPRALNEKQALTL----VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           +N  K+   P+ +  +  +TL    V N L + S      ++ + A+  L +  G+R SE
Sbjct: 139 KNYMKNIDRPKHVKVRHMVTLSADEVKNFLSNIS------NSEHHALFKLAFATGMRRSE 192

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKI----------------RIVPLLPSVRKAILEYYDL 216
            L L   +I   +ST+ I     KI                RI+ +     + ++++   
Sbjct: 193 LLGLRWSDIDFKKSTISISQTALKIGSTAVISNTTKTTSSKRIIAIDTDTIQELMKHK-- 250

Query: 217 CPFD---------LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
              D         +N N+  P   GI+G P  P    +  ++    +G P + T H  RH
Sbjct: 251 TTIDKRRIKTMNWINNNLVFP---GIKGAPRCPDEVSKLCKKYANLIGKP-TFTMHGTRH 306

Query: 268 SFATHLLSNGGDLRSIQSILGHFRL-STTQIYTNVNSKNGGD 308
           + AT L+ NG ++++IQ  LGH     T   Y++V  K   D
Sbjct: 307 THATLLIENGANMKAIQERLGHASFQETMDTYSHVTPKMEDD 348


>gi|225376010|ref|ZP_03753231.1| hypothetical protein ROSEINA2194_01647 [Roseburia inulinivorans DSM
           16841]
 gi|225212165|gb|EEG94519.1| hypothetical protein ROSEINA2194_01647 [Roseburia inulinivorans DSM
           16841]
          Length = 85

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 3/58 (5%)

Query: 250 LRRYLG---LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + +Y G     ++ T H  RHSFAT+L+    ++R IQ +LGH  ++TTQIYT V ++
Sbjct: 2   IHKYAGEIQADINITPHMFRHSFATYLMEEDVNIRYIQKMLGHASITTTQIYTYVTTE 59


>gi|206599577|ref|YP_002242016.1| gp33 [Mycobacterium phage Brujita]
 gi|206282726|gb|ACI06247.1| gp33 [Mycobacterium phage Brujita]
 gi|302858513|gb|ADL71260.1| gp33 [Mycobacterium phage island3]
          Length = 297

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 99/221 (44%), Gaps = 40/221 (18%)

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             + ++  +L+++    ++ ++ +   K+  S+PR ++       V  +L   +H+    
Sbjct: 65  GALSAWFLWLQQQGHRHDNPMVMIGRPKRPKSVPRPVSNLD----VQRLLAVRAHK---- 116

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
             R  A++ L    GLR+ E   +  +++   + T+ + GKG+    +PL   V      
Sbjct: 117 --RTKAMILLAAFQGLRVHEIAQIKGEHLDLIERTMTVTGKGNVTATLPLHHRV------ 168

Query: 213 YYDLCPFDLNLNIQLP----LFRGI-----RGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
                   + +  Q+P     F G      R + ++  + +  IR         +  +AH
Sbjct: 169 --------VEIAYQMPRRGHWFPGPDRGHQRRESVSGTIKEAMIRA-------GVVGSAH 213

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            LRH F T LL  G DLR++Q ++ H  L++T+IYT V  +
Sbjct: 214 CLRHWFGTALLEAGVDLRTVQELMRHQSLTSTEIYTRVTDQ 254


>gi|119960917|ref|YP_947150.1| Tn554-related transposase A [Arthrobacter aurescens TC1]
 gi|119947776|gb|ABM06687.1| Tn554-related transposase A [Arthrobacter aurescens TC1]
          Length = 368

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 106/245 (43%), Gaps = 31/245 (12%)

Query: 77  KRRTQKIGDRSLKRSLSGIKS----FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            R   ++GD  +K +  G +S    FL ++ K +      I     L+    LPR L   
Sbjct: 123 ARHGVELGDLLVKWAAPGARSSWKPFLHHISKGRPQRRRAI----ALEAPVKLPRVLTVG 178

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-- 190
           +  +++D               R+  +  +L+  G+RI E L L   ++   +  +R+  
Sbjct: 179 EVQSILDAC----------TRLRDRFLFAVLFDTGMRIGEVLGLRHDDLSAAEREVRVVA 228

Query: 191 -------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGV 242
                  + K  + R VP+   + +   +Y  L   DL+ + + + L+ G  G  L+   
Sbjct: 229 RLNENGARAKTGRPRTVPVSAELLRLYADYLHLEYGDLDSDYVFVNLWGGRVGHALSYRS 288

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
               + +LRR  G+      H  RHS AT +L +   L  + S+LGH  ++TT  +Y ++
Sbjct: 289 VYDLVGRLRRRTGVDFDP--HWFRHSAATRMLRDSVPLEVVSSLLGHASVTTTMDVYGHL 346

Query: 302 NSKNG 306
            +++ 
Sbjct: 347 TAEDA 351


>gi|332884088|gb|EGK04368.1| hypothetical protein HMPREF9456_01396 [Dysgonomonas mossii DSM
           22836]
          Length = 410

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 20/142 (14%)

Query: 166 CGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPF 219
           CGL   +  +L   NI    DD+  L + GK +K  +   +PLL  + + IL+ Y+    
Sbjct: 256 CGLAYIDVKNLRKDNIRISFDDK--LWLIGKREKTGVSFTIPLL-DIPQRILDKYEGALS 312

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
           D  +   LP+       P N  V   Y++++    G+    + H  RH+FAT  LS G  
Sbjct: 313 DDRV---LPV-------PSNQKV-NAYLKEIGSLCGIDKELSFHLARHTFATLTLSKGVS 361

Query: 280 LRSIQSILGHFRLSTTQIYTNV 301
           + S+  +LGH  + TTQIY  +
Sbjct: 362 IESVSKMLGHTNIRTTQIYARI 383


>gi|301311826|ref|ZP_07217748.1| integrase [Bacteroides sp. 20_3]
 gi|300829928|gb|EFK60576.1| integrase [Bacteroides sp. 20_3]
          Length = 405

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 115/251 (45%), Gaps = 39/251 (15%)

Query: 78  RRTQKIGDRSLKRSLSG--IKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNE--- 131
           +R  K+ D  L R ++G  ++ F  YLK  K   ++ ++  M+  KK  +L  A NE   
Sbjct: 149 KRDYKVDDMLL-REVNGELVRKFDLYLKAEKHCAQNTVIRYMKCFKKVINLAIA-NEWLT 206

Query: 132 ---------------KQALTLVD-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
                          KQ L+  + N +     + + ++      ++ +Y  GL   +  +
Sbjct: 207 KNPFAGIKFHEVEVNKQFLSQAEINRIWQKEFKIERLELVRDVFIFCVYT-GLAFIDVYN 265

Query: 176 LTPQNIMDDQS----TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           L  ++I +D +     ++ + K + +  +PLL S+ K IL+ Y   P+ L+    LP+  
Sbjct: 266 LRSEHISEDSNGNLWIVKAREKTNNLCNIPLL-SIPKQILDKYKDNPYCLDKGTLLPV-- 322

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHF 290
                P N  +   Y++++    G+  + T HT RHSFA+ + L+N   L ++  +LGH 
Sbjct: 323 -----PCNQKM-NSYLKEIADLCGIKKNLTTHTARHSFASVIALANNVSLPNVAKMLGHS 376

Query: 291 RLSTTQIYTNV 301
               TQ Y  V
Sbjct: 377 STRMTQHYAKV 387


>gi|329766934|ref|ZP_08258462.1| hypothetical protein HMPREF0428_00159 [Gemella haemolysans M341]
 gi|328837659|gb|EGF87284.1| hypothetical protein HMPREF0428_00159 [Gemella haemolysans M341]
          Length = 301

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 121/272 (44%), Gaps = 13/272 (4%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +  S  T+ SY+ D ++  ++LA   E   +      L+   I  +I   R ++    +L
Sbjct: 17  KEFSTNTINSYDRDLKKIFLYLA---ERGYSTDDYSWLNEEFISRYIDYLREKEYSSATL 73

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
            R++S +  F++YL   KI    N +N+  ++ K       +  +Q ++ + +V  H   
Sbjct: 74  SRTISTVHIFVEYLWMEKII--PNRINIDVHIDKEEHQDLVIFTRQEISKILDVKTHN-- 129

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
               I  R+ AI  L Y  G++ +E ++L  +++      L+ + K +  R V L     
Sbjct: 130 ---LIGYRDKAIFELSYSIGIKPTECINLELKDVNTTIGFLKYRKK-EGYRTVALNRESV 185

Query: 208 KAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           +AI  Y  +L     ++     LF    G+ ++   F +  ++ ++ LGL         R
Sbjct: 186 EAIENYITELKKEYPDIKDDSKLFLNHDGEGISRQGFWKIFKKRQQDLGLTKELNTMNFR 245

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +S A HLL +      +Q +LG   + + ++Y
Sbjct: 246 NSLAIHLLEDKVPAEEVQELLGLKNIHSLKLY 277


>gi|295086576|emb|CBK68099.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 414

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 18/191 (9%)

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC-GLRISEALSLTPQNIMDDQSTLR 189
           EK+ L   D  LL  S +T ++  R   +    Y C G+   +   LT +NI+  +    
Sbjct: 217 EKRYLQPKDLELLKNSPQTNFVLERARMLFLFSYYCYGMSFVDMAKLTTENIVVSEGIGH 276

Query: 190 IQGKGDKIR--------IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF-RGIRGKPLNP 240
           I  K +K +        I+P+ P++ K ILE++      L  +  LP+  +   G+ L  
Sbjct: 277 IVYKREKTKNVKNMKPLIIPVTPAL-KDILEWFKQNT-SLVGDYLLPIITKDYDGEQLYD 334

Query: 241 GVFQRY------IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            +  RY      +++L + LG+  + T +  RH+ A  L  N     +I ++LGH  + T
Sbjct: 335 HIRTRYQRLNNNLKKLGKILGVEKNLTTYVSRHTMAMTLQGNDVSRETISAVLGHRDIKT 394

Query: 295 TQIYTNVNSKN 305
           T  Y +  S+N
Sbjct: 395 TMTYLDSLSQN 405


>gi|168802255|ref|ZP_02827262.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC508]
 gi|189375754|gb|EDU94170.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC508]
          Length = 138

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 23/135 (17%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G R SEA  L    ++  + T  ++ KG K R VP+ P                  L   
Sbjct: 7   GARWSEAEGLKQSQVLPGRITF-VKTKGKKNRTVPISP-----------------QLQAM 48

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
           LP  RG    P     ++ +   ++R  + LP     H LRH+FA+H +  GG++  +Q 
Sbjct: 49  LPKKRGALFSP----CYEAFDAAIKRAKIELPDGQLTHVLRHTFASHFMMRGGNILVLQK 104

Query: 286 ILGHFRLSTTQIYTN 300
           ILGH  +  T  Y +
Sbjct: 105 ILGHSDIKMTMRYAH 119


>gi|310826836|ref|YP_003959193.1| Site-specific recombinase XerC [Eubacterium limosum KIST612]
 gi|308738570|gb|ADO36230.1| Site-specific recombinase XerC [Eubacterium limosum KIST612]
          Length = 303

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS- 293
           G   +P   +R   +L+   GL    T H+LRHSFAT  L  G D+R++  +LGH  ++ 
Sbjct: 220 GSAYDPRTIERRFDKLKAEHGLSSGVTFHSLRHSFATRALEAGADMRTVSDLLGHSSVAF 279

Query: 294 TTQIYTNVNSKNGGDWMMEI 313
           T   Y++  +K   + M +I
Sbjct: 280 TMNCYSHSATKLKREQMEKI 299


>gi|222159805|gb|ACM47280.1| integrase-like protein IntD [Enterococcus avium]
          Length = 278

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 9/146 (6%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           ++  + G G+R+SE   +T +     ++ + ++GK    R V L   +R  +L+Y     
Sbjct: 127 VMLTICGTGIRVSELQHITVEAAQTGRAEICMKGKN---RTVLLQKELRTRLLKYAK--- 180

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNG 277
            +L +N +  +FR   GKPL+       +++L     + P     H LRH FA    +  
Sbjct: 181 -ELGIN-EGHIFRTRSGKPLDRTNICHDMKKLCASARVDPRKVFPHNLRHLFARSFYAIE 238

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNS 303
            +L  +  ILGH R+ TT+IY   ++
Sbjct: 239 KNLAHLADILGHSRIETTRIYVAASA 264


>gi|154489817|ref|ZP_02030078.1| hypothetical protein PARMER_00045 [Parabacteroides merdae ATCC
           43184]
 gi|154089259|gb|EDN88303.1| hypothetical protein PARMER_00045 [Parabacteroides merdae ATCC
           43184]
          Length = 407

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 16/150 (10%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYD 215
            ++ LY CGLR  +   LT +N+      L+ +    KG       ++P +   +L    
Sbjct: 256 FIFCLY-CGLRFCDVKDLTYRNVDYANRLLKFEQSKTKGHSASSGVVIP-LNDGLLSIIG 313

Query: 216 LCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
             P D N L   LP +             +R++++     G+    + H  RHSFA ++L
Sbjct: 314 EAPADKNCLIFDLPTYESC------CKSVKRWVKRA----GIDKHISWHCARHSFAVNIL 363

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +NG +++++ S+LGH  L  T+ YT    K
Sbjct: 364 NNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|331675773|ref|ZP_08376491.1| resolvase (Protein D) [Escherichia coli H591]
 gi|331076547|gb|EGI47823.1| resolvase (Protein D) [Escherichia coli H591]
          Length = 259

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 40/182 (21%)

Query: 153 DARNSAILYLLYGCGLRISEAL-------SLTPQNIMDDQSTL------------RIQGK 193
           D     +L  L+  G RI+EAL       SLTP       +TL            R+   
Sbjct: 57  DLHRKMLLATLWNTGARINEALALTRSDFSLTPPYPFVQLATLKQRTEKAARTAGRMPAG 116

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR 251
               R+VPL  S   + L+        +   +++P+ R  +  G+     +++   R +R
Sbjct: 117 QQTHRLVPLSDSWYVSQLQ-------TMVATLKIPMERRNKRTGRTEKARIWEVTDRTVR 169

Query: 252 RYLG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            ++G              +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT
Sbjct: 170 TWIGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYT 229

Query: 300 NV 301
            V
Sbjct: 230 KV 231


>gi|259503340|ref|ZP_05746242.1| phage integrase family site-specific recombinase [Lactobacillus
           antri DSM 16041]
 gi|259168711|gb|EEW53206.1| phage integrase family site-specific recombinase [Lactobacillus
           antri DSM 16041]
          Length = 362

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/292 (21%), Positives = 119/292 (40%), Gaps = 37/292 (12%)

Query: 56  EKITIQTIRQLSYTEIRAFISK-RRTQKIGDR-----SLKRSLSGIKSFLKYLK------ 103
           + I+ +T+ +L   +I  +I   + TQ    R     S+ RS++ ++S  KYL       
Sbjct: 69  DSISTKTLEKLRRNDIMLYIDHLKHTQNAQGRLNSPTSINRSINALRSLFKYLTVTADIN 128

Query: 104 ------------KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET-- 149
                       K     ++  LN R    S+ + R   +   +  + N   H   +   
Sbjct: 129 DGEPYFYRNVMLKIDSLNDTQTLNYRAHTLSSHMYRGQMKFDFINFIQNEYPHKCDKRAL 188

Query: 150 ---KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
              K    R+ AI+ L+ G G+R+SEA ++   ++  +Q  L +  KG +   VP+ P  
Sbjct: 189 PAFKVNRERDIAIIALILGTGVRVSEAANVNLGDLNINQGLLDVVRKGGQRDSVPIAPWS 248

Query: 207 RKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            + + +Y  +          +    L ++ G   + +     +R +++     G PL  T
Sbjct: 249 IQYLRDYLAIRAQRYHALKKDTACFLTVYHG-ETRRMTANAIERMVKKYSTAFGHPL--T 305

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            H LRH+ A+ +     D   +   LG    S T +YT+V      + + EI
Sbjct: 306 PHKLRHTLASEMYEVTKDQVLVAQQLGQKGTSATDLYTHVGVTQQREALDEI 357


>gi|134046324|ref|YP_001097809.1| phage integrase family protein [Methanococcus maripaludis C5]
 gi|132663949|gb|ABO35595.1| phage integrase family protein [Methanococcus maripaludis C5]
          Length = 295

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 86/185 (46%), Gaps = 27/185 (14%)

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQST 187
           L+EKQ  T++  V+ +  +            L+LL   G+RISE  ++   ++ ++D+S 
Sbjct: 115 LSEKQVATVLAKVMNYDYY---------VYTLFLL-KTGVRISEFQNILFNDVDLEDRSI 164

Query: 188 LRIQGKGDKIRIV----PLLPSVRKAILEYYDLCPFDLNLNIQLPLF----RGIRGKPLN 239
               GKG K R V     LL  ++K I        +  NLN++   F    +G +     
Sbjct: 165 YIRDGKGGKDRYVFIDNELLNHLKKYI-------AYRENLNLKTNCFFVTEQGKKVTNYA 217

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
              F+ Y++++ +   +P   T H  RH+F T    +  +L  +  I+GH  L+TT  Y 
Sbjct: 218 IDKFREYLKEVTK-DKIPFDVTPHVFRHTFGTLACEDEMNLIVLSKIMGHSNLNTTSGYV 276

Query: 300 NVNSK 304
           + N +
Sbjct: 277 HSNKE 281


>gi|253575298|ref|ZP_04852636.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845295|gb|EES73305.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 344

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/313 (20%), Positives = 132/313 (42%), Gaps = 38/313 (12%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS------------- 76
           GL + TL  Y    + +  F+ +  E    ++ + +++   +R  IS             
Sbjct: 40  GLRERTLVDY---AKHYGYFVDWLREAHADVEYVDEVTTQMVRDHISYLKYDRTRYEGHK 96

Query: 77  --KRRTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
               + Q++G  D ++   L  +K+    L++  +   + +  ++ L++   L   L + 
Sbjct: 97  YIPTKDQRVGLSDTTINIRLRTLKAIFNQLERDDLIEVNPLAKVKLLRQDVDLTNCLTDD 156

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-- 190
           +        +L   +   ++  R+   +  L   GLRISE L L   +I D Q+   +  
Sbjct: 157 EV-----KAILAQPNRRDFVGFRDYVGIVTLLDSGLRISELLKLRAGDI-DFQTRFIVLP 210

Query: 191 --QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
               K  K R+VP+     K +L+   L   +        LF    G+P++P  F + ++
Sbjct: 211 GEMNKNRKPRMVPISAHTAKLLLQ---LIEENRQFFSTDRLFMSSFGEPISPNHFNKRLK 267

Query: 249 QLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                 G+     TAH  RH++A  ++ NG D  +IQ + G   + T + Y  +++    
Sbjct: 268 YYGEKAGVAGKKMTAHVYRHTWARAMVLNGADPFTIQKMGGWADMRTMRRYVQMDT---- 323

Query: 308 DWMMEIYDQTHPS 320
           D + + +D+  P+
Sbjct: 324 DDLRKSHDEFSPT 336


>gi|315607470|ref|ZP_07882465.1| mobilizable transposon [Prevotella buccae ATCC 33574]
 gi|315250653|gb|EFU30647.1| mobilizable transposon [Prevotella buccae ATCC 33574]
          Length = 418

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 34/63 (53%)

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           NP    R +R      G+    + H  RH+FAT  L+NG D+ ++  +LGH  + TTQ+Y
Sbjct: 335 NPSWISRPLRAWIEKAGIQKHLSFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVY 394

Query: 299 TNV 301
             V
Sbjct: 395 AKV 397


>gi|312898354|ref|ZP_07757744.1| site-specific recombinase, phage integrase family [Megasphaera
           micronuciformis F0359]
 gi|310620273|gb|EFQ03843.1| site-specific recombinase, phage integrase family [Megasphaera
           micronuciformis F0359]
          Length = 306

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 85/184 (46%), Gaps = 24/184 (13%)

Query: 126 PRA-----LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           PRA     LN+ +  TL+ ++ L       W+       + L+   G+R SEAL+LTP++
Sbjct: 108 PRAKKIKYLNQFELHTLLSSLKLPPKINWDWL-------ILLIAKTGMRFSEALALTPKD 160

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEYYDLCPFD---LNLNIQLPLFRG 232
               + +L ++   D       +P     SVRK  L++  +  F      L    P+F  
Sbjct: 161 FDFARQSLSVERTWDYKGKGGFMPTKNKSSVRKIQLDWQTIIQFSELIKGLPEDEPIF-- 218

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           IRG+  N  V     R  +    +P+  + H LRH+ A+ LL  G  + S+   LGH  +
Sbjct: 219 IRGRVFNSTVNSILARHCKAQ-NIPV-ISIHGLRHTHASLLLFAGVSIASVARRLGHASM 276

Query: 293 STTQ 296
           +TTQ
Sbjct: 277 TTTQ 280


>gi|190576855|ref|YP_001966187.1| ResA resolvase [Klebsiella pneumoniae]
 gi|218561692|ref|YP_002394604.1| Resolvase (Protein D) [Escherichia fergusonii ATCC 35469]
 gi|110264439|gb|ABG56802.1| ResA resolvase [Klebsiella pneumoniae]
 gi|218350206|emb|CAQ86969.1| Resolvase (Protein D) [Escherichia fergusonii]
 gi|323958891|gb|EGB54567.1| phage integrase [Escherichia coli H489]
          Length = 258

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 99/245 (40%), Gaps = 70/245 (28%)

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL-------- 162
           S +L+  + ++   +P A++   AL L    L+        +    SA+L+         
Sbjct: 2   SGLLSYSHPQQPAQMPVAIDYPAALALRQMALVQDELPKYLLAPEVSALLHYVPDLHRKM 61

Query: 163 ----LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL------- 211
               L+  G RI+EAL+LT               +GD   +VP  P V+ A L       
Sbjct: 62  LLATLWNTGARINEALALT---------------RGD-FSLVPPYPFVQLATLKQRTEKA 105

Query: 212 -----------EYYDLCPFD----------LNLNIQLPLFRGIR--GKPLNPGVFQRYIR 248
                      + + L P            +   +++PL R  +  G+     ++    R
Sbjct: 106 ARTAGRAPAGSQAHRLVPLSDHHYVSQLQMMVATLKIPLERRNKRTGRTEKARIWDITDR 165

Query: 249 QLRRYLG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            +R ++G              +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T+
Sbjct: 166 TVRTWIGEAVEAAAVDGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTE 225

Query: 297 IYTNV 301
           +YT V
Sbjct: 226 VYTKV 230


>gi|227890002|ref|ZP_04007807.1| site-specific tyrosine recombinase XerS [Lactobacillus johnsonii
           ATCC 33200]
 gi|227849446|gb|EEJ59532.1| site-specific tyrosine recombinase XerS [Lactobacillus johnsonii
           ATCC 33200]
          Length = 356

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 147/349 (42%), Gaps = 54/349 (15%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYT 54
           ME N   E++  EL     ++++   +    S  T   Y  + R+F  +L      +  +
Sbjct: 1   METNKYLELIKQEL-ANMPDFVKEYNLGTSHSLTTTYQYLTEIRRFFDWLRQNNIASVSS 59

Query: 55  EEKITIQTIRQLSYTEIRAFISK-RRTQKIGDR-----SLKRSLSGIKSFLKYLKKRKIT 108
            ++I + T+  L   ++  +I   + T+    R     ++ RS++ ++S  K+L    IT
Sbjct: 60  NKEIEVTTLENLQRNDVMLYIHHLKHTKNQQGRLNSPTTINRSINALRSLYKFLT---IT 116

Query: 109 TESN----ILNMRNLKKSNSL--PRALNEK---------------QALTLVDNVLLHTSH 147
           +++N      +   + K NSL   + LN +               Q L  ++N  +H  +
Sbjct: 117 SDNNHGEPYFDRNVMLKINSLNDTKTLNYRAHVLESHMYMGDLKYQFLDFIENEYVHKCN 176

Query: 148 ET-----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG---DKIRI 199
           +      K    R+ AI+ L+ G G+R+SE + +  +NI    + L +  KG   D + I
Sbjct: 177 KQSLPAFKKNHERDMAIIALILGTGIRVSECVGVNMRNINLKDAMLDVTRKGGQKDSVPI 236

Query: 200 ----VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
               +P L   R+   + Y     D      L  + G + K +     ++ + +     G
Sbjct: 237 AAWTIPYLKKYREIRADRYHAEKEDTAF--FLTRWHG-KTKRITTNAVEKMVNKYSAAFG 293

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            PL  T H LRH+ A+ L     D   +   LG    + T +YT+V+ K
Sbjct: 294 KPL--TPHKLRHTLASELYEVTKDQVLVAQQLGQKGTTATDLYTHVDQK 340


>gi|288869960|ref|ZP_06112412.2| putative integrase - phage associated [Clostridium hathewayi DSM
           13479]
 gi|288868962|gb|EFD01261.1| putative integrase - phage associated [Clostridium hathewayi DSM
           13479]
          Length = 424

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 109/256 (42%), Gaps = 44/256 (17%)

Query: 63  IRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           I+ L  + I +F S   +++K+   +L   LS IK+ ++Y  ++ I  +     M+ +K 
Sbjct: 152 IKDLRMSHIESFRSYMIKSKKLAQYNL--CLSRIKAIVRYAVQKDIMAKDITAGMKRVKI 209

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
                RAL  ++ L            E   +D+     + LL   GLR  EAL+L  ++I
Sbjct: 210 DKKPKRALTSEERLLF----------EITDLDSFERCFINLLLYTGLRKCEALALDVKDI 259

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRK---AILEYYDLCPFDLNLNIQLPL----FRGIR 234
                      K ++I +   L + +K    + EY         + I  PL    F  I+
Sbjct: 260 ---------DLKKNQIYVSKTLVASKKINTCLQEYTKTAAGLRQIPIPAPLAKILFEFIK 310

Query: 235 GKP--LNPGVFQRYI-----------RQLRRYLGLPLST--TAHTLRHSFATHLLSNGGD 279
           G+   L P    RYI           ++++     PLS   T H  RH++A+ L   G D
Sbjct: 311 GRSGILFPSKSGRYISTLDYKWEKILKKVQAVSSTPLSDDITPHIFRHTYASDLYKAGVD 370

Query: 280 LRSIQSILGHFRLSTT 295
           ++  Q +LGH  + TT
Sbjct: 371 IKQAQYLLGHDDIKTT 386


>gi|160886609|ref|ZP_02067612.1| hypothetical protein BACOVA_04621 [Bacteroides ovatus ATCC 8483]
 gi|156107020|gb|EDO08765.1| hypothetical protein BACOVA_04621 [Bacteroides ovatus ATCC 8483]
          Length = 424

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 88/194 (45%), Gaps = 18/194 (9%)

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC-GLRISEALSLTPQNIMDDQSTLR 189
           EK+ L   D  LL  S +T ++  R   +    Y C G+   +   LT +NI+  +    
Sbjct: 227 EKRYLQPKDLELLKNSPQTNFVLERARMLFLFSYYCYGMSFVDMAKLTTENIVVSEGIEH 286

Query: 190 IQGKGDKIR--------IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF-RGIRGKPLNP 240
           I  K +K +        I+P+ P++ K ILE++      L     LP+  +   G+ L  
Sbjct: 287 IVYKREKTKNVKNMKPLIIPVTPAL-KDILEWFKQNT-SLVGKYLLPIITKDYDGEQLYD 344

Query: 241 GVFQRY------IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            +  RY      +++L + LG+  + T +  RH+ A  L  N     +I ++LGH  + T
Sbjct: 345 HIRTRYQRLNNNLKKLGKILGIEKNLTTYVSRHTMAMTLQGNDVSRETISAVLGHRDIKT 404

Query: 295 TQIYTNVNSKNGGD 308
           T  Y +  S+N  D
Sbjct: 405 TMTYLDSLSQNVLD 418


>gi|186474388|ref|YP_001863359.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198347|gb|ACC76309.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 421

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 79/202 (39%), Gaps = 53/202 (26%)

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLR----IQGKGDKIRI 199
           H  +W+         LLY  GLRI+EA S T        D   T+R    ++GKGD+ R+
Sbjct: 211 HRVRWL-------FTLLYLGGLRIAEAGSNTMGQFFVRRDTDGTMRWWLTVRGKGDRERL 263

Query: 200 VPLLPSVRKAILEY------------YDLCPFDLNLNIQLPLFRGIRGK--------PLN 239
           VP    +   +  Y            ++  P  L +        G  G+        P+N
Sbjct: 264 VPATREMMSELARYRQSLGMTALPSPHEATPLVLPIGSTAGGASGRTGESSRRNTAAPVN 323

Query: 240 PG------------VFQRYIRQLRRY-------LGLPLSTTAHTLRHSFATHLLSNGGDL 280
                         VF    RQLR +         L    +AH LRHS  +H+     DL
Sbjct: 324 QPLTRAALHTIVKRVFAGAARQLREHGAEFEARAALLEQASAHWLRHSAGSHMADRQVDL 383

Query: 281 RSIQSILGHFRLSTTQIYTNVN 302
           R ++  LGH  L+TT +Y + +
Sbjct: 384 RLVRDNLGHASLATTSLYLHAD 405


>gi|146301334|ref|YP_001195925.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146155752|gb|ABQ06606.1| Bacteroides conjugative transposon integrase-like protein
           [Flavobacterium johnsoniae UW101]
          Length = 419

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 37/193 (19%)

Query: 121 KSNSLPRALNEKQALTLVD-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K   +P   + ++ LT+ + N L  T  E   +  + +A+   L   GLR S+   L  +
Sbjct: 230 KIKGIPEEESRREYLTIEELNALASTDCEKDVL--KRAALFSAL--TGLRHSDIQKLRWK 285

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
            I  +    ++     K + V  +P  ++A+     LC                 G+P  
Sbjct: 286 EIAVEDGMAKLHFTQKKTKGVEYMPISQQAL----QLC-----------------GEPRL 324

Query: 240 PG--VFQ-----RYI-RQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           PG  VF+      +I R L++++   G+  + T H  RH+FAT  LS+G D+ ++  +LG
Sbjct: 325 PGQLVFEDLPDPSWISRPLKKWVLSAGIKKNITFHCFRHTFATLQLSSGTDIYTVSKMLG 384

Query: 289 HFRLSTTQIYTNV 301
           H  + TTQIY  V
Sbjct: 385 HTNVKTTQIYAKV 397


>gi|241890154|ref|ZP_04777452.1| putative tyrosine recombinase XerD [Gemella haemolysans ATCC 10379]
 gi|241863776|gb|EER68160.1| putative tyrosine recombinase XerD [Gemella haemolysans ATCC 10379]
          Length = 299

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 125/283 (44%), Gaps = 35/283 (12%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +  S  T+ SY+ D ++  ++L    E+  + Q    L+   I  +I   R ++    +L
Sbjct: 17  KEFSTNTINSYDRDLKKIFLYLE---EKGYSTQDYSWLNEEFISRYIDYLREKEYSSATL 73

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R++S +  F++YL   K      I N  N+         +++++   LV    + T HE
Sbjct: 74  SRTISTVHIFVEYLWFEKF-----IPNRVNI------DVHIDKEEHQDLV----IFTRHE 118

Query: 149 -TKWIDA--------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            +K +D         R+ AI  L Y  G++ +E ++L  +++      L+ + K D  R 
Sbjct: 119 ISKILDVNTKNLIGYRDKAIFELSYSIGIKPTECINLELRDVNTTIGYLKYRKK-DGYRT 177

Query: 200 VPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           + L    + ++ K I+E     P   N+     LF    G+ ++   F +  ++ ++ LG
Sbjct: 178 IALNKESVEAIEKYIVELKKEYP---NIKDDSKLFLNHDGEGISRQGFWKIFKKRQQELG 234

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           L         R+S A HLL +      +Q +LG   + + ++Y
Sbjct: 235 LTKELNTMNFRNSLAIHLLEDKVPAEEVQELLGLKNIHSLKLY 277


>gi|323139352|ref|ZP_08074404.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322395418|gb|EFX97967.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 317

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 111/262 (42%), Gaps = 23/262 (8%)

Query: 49  FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT 108
           FLA+   E+  + +I  +    I A++    T+     + K+ L+ I+    +L   +I 
Sbjct: 50  FLAWC--EQRGLASIVDIEPLHIGAYVEAM-TRSHSAPTAKQRLAAIRMLFDWLVTGQIV 106

Query: 109 TESNILNMRNLK---KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
             +   ++R  K   K    P  L+  +A  L+D++ +     T  +  R+ A++ L+  
Sbjct: 107 PTNPAASVRGPKHVVKVGKTP-VLDPAEARALLDSIDV-----TAPVGLRDRALIGLMIY 160

Query: 166 CGLRISEALSLTPQNIMDDQSTL--RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
              R+  AL++  +++      L  R+  KG K   +P   ++   +  Y D C   L  
Sbjct: 161 SFARVGAALAMKVEDVYVQNRRLWVRLHEKGGKRHEMPCHHNLEAYLHAYIDGC--GLAS 218

Query: 224 NIQLPLFRGI-RGK------PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
           + + PLFR I RG       PL        IR+     G+      H+ R +  T  L N
Sbjct: 219 DPKAPLFRTIGRGAGALTFTPLPQANAYAMIRRRAVAAGIATKVGNHSFRATGITAYLKN 278

Query: 277 GGDLRSIQSILGHFRLSTTQIY 298
           GG L    S+  H    TTQ+Y
Sbjct: 279 GGTLEKAASMANHASTRTTQLY 300


>gi|237714130|ref|ZP_04544611.1| transposase [Bacteroides sp. D1]
 gi|262407180|ref|ZP_06083729.1| transposase [Bacteroides sp. 2_1_22]
 gi|294646950|ref|ZP_06724569.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294809675|ref|ZP_06768364.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229445954|gb|EEO51745.1| transposase [Bacteroides sp. D1]
 gi|262355883|gb|EEZ04974.1| transposase [Bacteroides sp. 2_1_22]
 gi|292637720|gb|EFF56119.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294443099|gb|EFG11877.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 409

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 20/150 (13%)

Query: 162 LLYGC--GLRISEALSLTPQNIM-DDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYD 215
            L+ C  G   ++A+S+T +N+  DD+ +L ++    K D +  V LLP     I +Y D
Sbjct: 253 FLFACYTGTAYADAVSITRKNLFRDDEGSLWLKYQRKKTDYLGRVKLLPEAVALIEKYRD 312

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
                   + +  LF      P +    +  ++ LR   GL      H  RHSFA+ + L
Sbjct: 313 --------DTRETLF-----PPQDYHTLRANMKSLRLMAGLSQDLVYHMGRHSFASLVTL 359

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             G  + +I  +LGH  + TTQIY  V  K
Sbjct: 360 EEGVPIETICKMLGHSNIKTTQIYARVTPK 389


>gi|229551651|ref|ZP_04440376.1| integrase [Lactobacillus rhamnosus LMS2-1]
 gi|229314969|gb|EEN80942.1| integrase [Lactobacillus rhamnosus LMS2-1]
          Length = 307

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 74/153 (48%), Gaps = 12/153 (7%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-KIRIVPLLP-----SVRKAILE 212
           ++ LL   GLR +EAL LTP +   D  TLRI    D K       P     SVR   L+
Sbjct: 138 MILLLAKTGLRFAEALGLTPADFDLDSLTLRINKTWDYKSATGKFAPTKNKSSVRTIALD 197

Query: 213 YYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           Y     F +   +L    P+F    GK +        +++     G+P+  +AH LRH+ 
Sbjct: 198 YKTAAKFAMLIQSLPKDKPIFVP-DGKRIYNETINDILKRHCENAGIPV-ISAHGLRHTH 255

Query: 270 ATHLLSNGGDLRSIQSILGH-FRLSTTQIYTNV 301
           A+ L+  G +L+++   LGH   L+T ++Y ++
Sbjct: 256 ASLLIGKGINLQAVAKRLGHSSSLTTQKVYIHL 288


>gi|59712648|ref|YP_205424.1| DNA integration/recombination/invertion protein [Vibrio fischeri
           ES114]
 gi|59480749|gb|AAW86536.1| DNA integration/recombination/invertion protein [Vibrio fischeri
           ES114]
          Length = 325

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 66/159 (41%), Gaps = 44/159 (27%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G R  EA SLT   +   + T     KG+K R VP    + K + E             +
Sbjct: 193 GCRWGEAESLTSTQLTPHRITF-THTKGNKHRTVP----ISKELYE-------------E 234

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQL-----RRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
           LP   G         +F   I+       R  + LP   + H LRH+FA+H + NGG++ 
Sbjct: 235 LPKKNG--------RLFSNCIKSFKMAVNRTGVQLPKGQSTHVLRHTFASHFMMNGGNIL 286

Query: 282 SIQSILGHFRLSTTQIYTNVN-------------SKNGG 307
            +Q ILGH  ++ T  Y + +             +KNGG
Sbjct: 287 VLQQILGHASITDTMKYAHFSPAHLEDAIKLNPLAKNGG 325


>gi|187734150|ref|YP_001880474.1| integrase [Shigella boydii CDC 3083-94]
 gi|187431142|gb|ACD10416.1| integrase [Shigella boydii CDC 3083-94]
          Length = 375

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 31/46 (67%)

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +P     H L H+FA+H + NGG++ ++Q ILGH ++ TT IY ++
Sbjct: 313 VPDGQAVHALHHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 358


>gi|160945433|ref|ZP_02092659.1| hypothetical protein FAEPRAM212_02955 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443164|gb|EDP20169.1| hypothetical protein FAEPRAM212_02955 [Faecalibacterium prausnitzii
           M21/2]
          Length = 357

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 119/298 (39%), Gaps = 34/298 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           + LS+ +L  Y    R F  FL        T Q I  ++   +  +I   + Q++ D ++
Sbjct: 65  KNLSQGSLDFYVAKGRSFFRFLG------DTEQPINTITEETVEDYIFYMKDQQLHDTTI 118

Query: 89  KRSLSGIKSFL------KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
             +L  +++FL       YL+K  I        ++    ++ L + L E    T      
Sbjct: 119 NTNLRMVRAFLYWCMEKGYLEKYPIRLVRADDPIKEPYTTDELQKLLKEPDCKT------ 172

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVP 201
                   + + RN  I+  L G G R S  L+L   ++     T+  +  K    +IVP
Sbjct: 173 ------CSFAEYRNWVIVNFLLGTGCRASTLLNLQIGDLDLFAGTVFFRHMKARNQQIVP 226

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           L  ++ K + EY +    D       PLF    G  +        I       G+   T+
Sbjct: 227 LSKALVKIMEEYLEHRTSDPTA----PLFVSEYGNQMTLNSLGNAIWNYNHSRGVE-KTS 281

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            H  RH++A   +  GGD   +Q +LGH  L+ T+ Y  + +    D +   YD  +P
Sbjct: 282 MHLFRHTYAKLYIQAGGDPFRLQKLLGHADLTMTRRYVALYA----DDLRANYDALNP 335


>gi|284991910|ref|YP_003410464.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284065155|gb|ADB76093.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 309

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 3/148 (2%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           LL T +   + D R+ A++ L    G R +E   L   ++     T+++ GKG +IR+VP
Sbjct: 132 LLATCNGRSFTDRRDHAMIRLFVDTGCRRAEIAELAVDSVDLANQTIQVLGKGRRIRVVP 191

Query: 202 LLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
                 +A+  Y  +   D   +   L L    RG PL+PG   + + +  R +G+  + 
Sbjct: 192 FGSRTAQALGRYLRMRDKDPWAHTGHLWLSEKGRG-PLSPGGIVQMLERRGRSVGI-TNL 249

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILG 288
            AH  RH+ A    +NGG    +  ++G
Sbjct: 250 HAHQFRHTAAHRWGANGGSETDLMRLMG 277


>gi|283851146|ref|ZP_06368430.1| TOBE domain protein [Desulfovibrio sp. FW1012B]
 gi|283573542|gb|EFC21518.1| TOBE domain protein [Desulfovibrio sp. FW1012B]
          Length = 393

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 82/183 (44%), Gaps = 38/183 (20%)

Query: 145 TSHETKWIDA-RNSAI---------LYL-LYGCGLRISEALSLTPQNIMD-DQSTLRIQG 192
           T+    W DA RN+ I         +YL L   G ++ E L+L  +  +D  Q+T+   G
Sbjct: 72  TAAFDAWRDAARNAPIRRARERMRLVYLMLRHSGAKLGEVLALNERTDIDLAQATVGFGG 131

Query: 193 KGDKIRIVPLLPSVRKAI-------LEYYDLCPFDLNLNIQLPLFRGIRGK--PLNPGVF 243
                   P  PS R  +       +E +  CP +          R +RG+   L+PG  
Sbjct: 132 TR------PEEPSRRVVVPQTFLDEVERFAACPAN----------RALRGELFHLDPGFV 175

Query: 244 QRYIRQLRRYLGLPLSTTAHT-LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +R + +  R  GLP    + T LRHS A  LL +G  L  +Q +LGH  L  T IY + +
Sbjct: 176 RRKLYEQARKAGLPTGRVSPTSLRHSRAVELLRSGVPLPVVQVMLGHSSLVLTSIYCSFS 235

Query: 303 SKN 305
            ++
Sbjct: 236 DQD 238


>gi|160890418|ref|ZP_02071421.1| hypothetical protein BACUNI_02860 [Bacteroides uniformis ATCC 8492]
 gi|156860150|gb|EDO53581.1| hypothetical protein BACUNI_02860 [Bacteroides uniformis ATCC 8492]
          Length = 409

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 20/150 (13%)

Query: 162 LLYGC--GLRISEALSLTPQNIM-DDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYD 215
            L+ C  G   ++A+S+T +N+  DD+ +L ++    K D +  V LLP     I +Y D
Sbjct: 253 FLFACYTGTAYADAVSITRKNLFRDDEGSLWLKYQRKKTDYLGRVKLLPEAVALIEKYRD 312

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
                   + +  LF      P +    +  ++ LR   GL      H  RHSFA+ + L
Sbjct: 313 --------DTRETLF-----PPQDYHTLRANMKSLRLMAGLSQDLVYHMGRHSFASLVTL 359

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             G  + +I  +LGH  + TTQIY  V  K
Sbjct: 360 EEGVPIETICKMLGHSNIKTTQIYARVTPK 389


>gi|116329653|ref|YP_799372.1| XerD related protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116122546|gb|ABJ80439.1| XerD related protein (integrase family) [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
          Length = 298

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 121/278 (43%), Gaps = 60/278 (21%)

Query: 60  IQTIRQLSYTEIRAF-----------ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT 108
           I+ IRQ +Y +  A+            + +  +KI  + L R       ++ +L+KRK++
Sbjct: 18  IKIIRQRNYKKATAYTYMKYNLDFLHFADKPAEKITVKDLNR-------YMDHLRKRKVS 70

Query: 109 TESNILNMRNLK-------KSNSLP------RALNEKQALTLVDNVLLHTSHETKWIDAR 155
           + +  +N+ +LK       K N         R  N   A+T  +   + +  +T   +A+
Sbjct: 71  SSTIQINVSSLKMFFEDVMKMNLFQDFQRPVREYNNPNAITYKE---MQSILKTASSNAK 127

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL--------PSVR 207
           +  +  L+Y  GLR+ E ++L   ++   + ++ I+        VP+L        P+  
Sbjct: 128 HELMCGLVYFGGLRVGELITLRWAHLDTKRKSIHIK--------VPVLSQSRTVEIPAEL 179

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV----FQRYIRQLRRYLGLPLSTTAH 263
             +++ Y+      +     P      GK L         +R I ++ R  G+    T  
Sbjct: 180 GTLIKKYEREVISSSSTYLFP------GKSLGSHTTSRNVERIISEIGRNSGISSPITVF 233

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           TLRHS A HL+++G  L  ++  LGH  L++T+ Y  V
Sbjct: 234 TLRHSRALHLIADGSSLNHVKDFLGHKTLASTESYLPV 271


>gi|159897174|ref|YP_001543421.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890213|gb|ABX03293.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 328

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 98/219 (44%), Gaps = 19/219 (8%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALTLVDNVLLHTSHET 149
           LS ++  LK   +  + T  +     +LK  K N+   A         +  +    + ++
Sbjct: 92  LSALRGVLKMAWRMGLMTGEDYTRAVDLKTVKGNAPDAAAGRSLTAAELRALFAACAADS 151

Query: 150 KWIDARNSAILYLLY-GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
             I  R++AIL L Y G GLR +E ++L   +   + + L I+GKG+K+R   +    R+
Sbjct: 152 SPIGRRDAAILALAYAGGGLRRAEIVNLDLSDFNPETAMLTIRGKGNKVRTAYVRGGARE 211

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR------YIRQLRRYLGLPLST-- 260
           A+ E+  +   +       PLF  ++   +   +++R      YI   RR  G   +   
Sbjct: 212 ALDEWLAVRGDEAG-----PLFWRLQAGGVAGQMYERLSDQAIYILCQRR--GKEANVRH 264

Query: 261 -TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            + H +R +F +  L  G D+ ++  + GH   +TT  Y
Sbjct: 265 FSPHDIRRTFISDQLDAGTDVLTVARLAGHSNANTTSRY 303


>gi|322836440|ref|YP_004215817.1| integrase [Rahnella sp. Y9602]
 gi|321170993|gb|ADW76690.1| integrase family protein [Rahnella sp. Y9602]
          Length = 260

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 96/228 (42%), Gaps = 52/228 (22%)

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL------------LYGC 166
           L +   LP A++   AL L    L+        +    SA+L+             L+  
Sbjct: 11  LHQMAQLPVAIDYPAALALRQMALIQDELPKYLLAPEVSALLHYVPDLHRKMLLSTLWNT 70

Query: 167 GLRISEALSLT-------PQNIMDDQSTL------------RIQGKGDKIRIVPLLPSVR 207
           G RI+EAL+LT       P       +TL            R+      +R++PL  ++ 
Sbjct: 71  GARINEALALTRSDFNLAPPYPFVQLATLKQRAEKAARTAGRLPAGSQALRLIPLSDALY 130

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG---------- 255
            + L+        +   +++PL R  +  GK     +++   R +R ++           
Sbjct: 131 VSQLQM-------MVATLKIPLERRNKRTGKTEKARIWEITDRTVRSWISEAVEAASCDG 183

Query: 256 --LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 184 VTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSVSSTEVYTRV 231


>gi|225390518|ref|ZP_03760242.1| hypothetical protein CLOSTASPAR_04273 [Clostridium asparagiforme
           DSM 15981]
 gi|225043423|gb|EEG53669.1| hypothetical protein CLOSTASPAR_04273 [Clostridium asparagiforme
           DSM 15981]
          Length = 269

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 14/141 (9%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
            +   G+R+SE + +   ++        I  KGDK+R + +  ++R  +L + +    D 
Sbjct: 121 FMAATGVRVSELVGVLVADVRLGYKD--IHSKGDKVRRIYIPKTLRTELLSWLEEEKRDH 178

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL----PLSTTAHTLRHSFATHLLSNG 277
                  LF    G P++    +R   QL+ + GL    P     H+ RH FA   L   
Sbjct: 179 G-----RLFLNNLGDPMSTSAVRR---QLKVFSGLYQIDPERMYPHSFRHYFAKTFLEAC 230

Query: 278 GDLRSIQSILGHFRLSTTQIY 298
           GD+  + ++LGH  L TT+IY
Sbjct: 231 GDITLLSNLLGHENLETTRIY 251


>gi|320173114|gb|EFW48332.1| Integrase [Shigella dysenteriae CDC 74-1112]
          Length = 375

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 31/46 (67%)

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +P     H L H+FA+H + NGG++ ++Q ILGH ++ TT IY ++
Sbjct: 313 VPDGQAVHALHHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 358


>gi|330399472|ref|YP_004030570.1| DNA integration/recombination/inversion protein [Burkholderia
           rhizoxinica HKI 454]
 gi|312170209|emb|CBW77248.1| DNA integration/recombination/inversion protein [Burkholderia
           rhizoxinica HKI 454]
          Length = 102

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           S + H   H+  T +L NG D+R +Q +L H +L++TQ+YT V  +     M EIY  TH
Sbjct: 16  SGSCHLFHHTMVTLMLENGADVRFMQVMLHHAQLTSTQMYTQVAIRE----MNEIYTATH 71

Query: 319 PSITQKDKK 327
           P+  ++ ++
Sbjct: 72  PAWLERPEQ 80


>gi|303248069|ref|ZP_07334335.1| TOBE domain protein [Desulfovibrio fructosovorans JJ]
 gi|302490626|gb|EFL50531.1| TOBE domain protein [Desulfovibrio fructosovorans JJ]
          Length = 394

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 17/153 (11%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGK--GDKIRIVPLLPSVRKAILEYYD 215
           +  +L   G ++ E L+L  +  +D  QST+   G    +  R V +  S+ + +L +  
Sbjct: 98  VYLMLRHSGGKLGEVLALNERTDIDMAQSTVSFGGADPNESPRKVVVPKSLIEEVLRFA- 156

Query: 216 LCPFDLNLNIQLPLFRGIRGK--PLNPGVFQRYIRQLRRYLGLPLSTTAHT-LRHSFATH 272
                       P  RGIRG+   L+PG  +R + +  R  GLP    + T LRHS A  
Sbjct: 157 ----------ASPANRGIRGELFRLDPGFVRRKLYEQARRAGLPPGRVSPTSLRHSRAVE 206

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           LL  G  L  +Q +LGH  L  T IY + + ++
Sbjct: 207 LLRGGVPLPVVQVMLGHSSLVLTSIYCSFSDQD 239


>gi|268796563|ref|YP_003310958.1| integrase [Sebaldella termitidis ATCC 33386]
 gi|268616661|gb|ACZ11027.1| integrase family protein [Sebaldella termitidis ATCC 33386]
          Length = 271

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 11/143 (7%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I+  L   G+RISE   +T + +  + ++++ +GK   IR + L   + K + EY   C 
Sbjct: 123 IIMTLANTGIRISELEFITVEALKKESTSIKNKGK---IREIILPKKLIKDLKEY---CK 176

Query: 219 FDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSN 276
            +   NI   P+F    G P++     R ++ +     +  S   AH  RH FA   +  
Sbjct: 177 KN---NITNGPVFISKAGNPIDITYIHRELKTISGQARIKKSKVHAHAFRHLFAIQYMKR 233

Query: 277 GGDLRSIQSILGHFRLSTTQIYT 299
             +  S+  ILGH  L TT+IYT
Sbjct: 234 NNNALSLADILGHSSLETTRIYT 256


>gi|13475206|ref|NP_106770.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025957|dbj|BAB52556.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 232

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 106/218 (48%), Gaps = 17/218 (7%)

Query: 92  LSGIKSFLKYLKKRKITTES-NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           ++ +++FL+Y           ++++M  + +    PRA++     T+V   LL +     
Sbjct: 2   IAHLRAFLRYCGDHGEAAGGLHVIDMPRVYRGELPPRAMD----WTMVRR-LLASIRRRA 56

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKA 209
             D R+ AIL+L+   GLR SE  +L   +I     TLR+ Q K   + ++PL     + 
Sbjct: 57  ARDWRDYAILHLMAYYGLRPSEVATLRLDSIDWKARTLRVEQRKTRSVLVLPLAGRTLRL 116

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP----GVFQRYIRQLRRYLGLPLS-TTAHT 264
           +  Y  +   D   ++   LF  IR  P+ P    GV   +  + ++  GL L   ++++
Sbjct: 117 LHRYLQVGRPD---SVLPQLFLRIR-SPIKPLKHYGVITVFTYRAQKS-GLSLGGVSSYS 171

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           LRH+FA  LL  G D+++I  +LGH  L  T +Y   +
Sbjct: 172 LRHAFAMRLLRRGVDVKAIGDLLGHRSLEATCVYLRAD 209


>gi|152973358|ref|YP_001337138.1| putative prophage gp Int for integrase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|150958207|gb|ABR80237.1| putative prophage gp Int for integrase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
          Length = 335

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 66/308 (21%), Positives = 114/308 (37%), Gaps = 42/308 (13%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECD--------TRQFLIFLAFYTEEKIT 59
           E ++FE    +  W +  E  R L +L    Y            RQ  +  AF    +  
Sbjct: 34  EALAFEQYTVQNPWQEEKEDRRTLKELVDSWYSAHGITLKDGLKRQLAMHHAFECMGEPL 93

Query: 60  IQTIRQLSYTEIRA------FISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESN 112
            +      ++  R       +    R +++  R+L   L+  ++    L +  +   E+ 
Sbjct: 94  ARDFDAQMFSRYREKRLKGEYARSNRVKEVSPRTLNLELAYFRAVFNELNRLGEWKGENP 153

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           + NMR  +        L + Q   L+     H   + +        ++ +    G R SE
Sbjct: 154 LKNMRPFRTEEMEMAWLTQDQISQLLGECKRHEHPDLE-------TVVRICLATGARWSE 206

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
           A SL    +   + T     KG K R VP+         E Y+  P D    +    +  
Sbjct: 207 AESLRKSQLAKYKITY-TNTKGRKNRTVPISK-------ELYETLPDDKKGRLFSDCY-- 256

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                   G F+  +   R  + LP     H LRH+FA+H + NGG++  +Q +LGH  +
Sbjct: 257 --------GAFRSALE--RTGIELPPGQLTHVLRHTFASHFMMNGGNILVLQRVLGHTDI 306

Query: 293 STTQIYTN 300
             T  Y +
Sbjct: 307 KMTMRYAH 314


>gi|261406276|ref|YP_003242517.1| site-specific tyrosine recombinase XerS [Paenibacillus sp.
           Y412MC10]
 gi|261282739|gb|ACX64710.1| integrase family protein [Paenibacillus sp. Y412MC10]
          Length = 360

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 121/290 (41%), Gaps = 54/290 (18%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK------------KR 105
           + ++T+R  S T  R +++ RR       ++ R LS ++S   YL             KR
Sbjct: 70  LELETLRMDSITGYRLYLTTRREGTNSRITVSRKLSSLRSLFHYLSQIAEDEDFYPLLKR 129

Query: 106 KITTESNILNMRNLKKSNSLPRA--------------LNEKQALTLVDNVLLHTSHETKW 151
            I  +  I  +   K + +  +               ++E     + +N     +HE   
Sbjct: 130 NIMAKVEIKRIHKPKDTAAKLKGKILEEEELQDFITYIHEGYGHDVENNKQALYAHEQNK 189

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG--DKIRIVPL-LPSVRK 208
           +  R++ I  L+   GLR+SE ++L   +I  +   L +  KG  D+    P+   +  K
Sbjct: 190 V--RDACIASLILNSGLRVSEVVNLNLADIDLNNKMLHVYRKGNNDETFKTPVYFRAQAK 247

Query: 209 AILEYYDLCPFDLNL---NIQLP-----LFRGIR-----GKPLNPGVFQRYIRQLRRYLG 255
             LE+Y      L L     ++P     LF  +R     G+ +     Q  I +  +  G
Sbjct: 248 DDLEHY------LQLRQTRYKVPKKEKALFVALRNGQNEGQRMTKRAIQAMIIKYAKRFG 301

Query: 256 LPLSTTAHTLRHSFAT-HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            P S T H LRHSFAT + L N  D+   +  LGH    TT++Y ++  K
Sbjct: 302 KP-SLTVHKLRHSFATDYYLQN--DIYKTKEQLGHASTETTEVYAHLTDK 348


>gi|212691988|ref|ZP_03300116.1| hypothetical protein BACDOR_01483 [Bacteroides dorei DSM 17855]
 gi|212665380|gb|EEB25952.1| hypothetical protein BACDOR_01483 [Bacteroides dorei DSM 17855]
          Length = 308

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 25/156 (16%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG--------KGDK--IRIVPLLPSVRKA 209
           +Y+    GLRI E  +L   +I  +  T+ +Q         +GDK   ++V   P  + +
Sbjct: 133 IYISLSTGLRIGEVCALRWSDIDIEAGTISVQRTIERIYVIEGDKKHTKLVINTPKTKNS 192

Query: 210 ILEYYDLCPFDLNL-NIQLPLFRGI---------RGKPLNPGVFQRYIRQLRRYLGLPLS 259
             E     P    L ++  PL + +            P  P  ++ Y ++L   LG+P  
Sbjct: 193 CRE----IPMSKELISMVKPLKKIVNTDYYVLTNEPSPTEPRTYRNYYKRLMEQLGIP-K 247

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
              H LRHSFAT  + +  D +++  +LGH  +STT
Sbjct: 248 LKYHGLRHSFATRCIESNCDYKTVSVLLGHSNISTT 283


>gi|29347338|ref|NP_810841.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|167762412|ref|ZP_02434539.1| hypothetical protein BACSTE_00766 [Bacteroides stercoris ATCC
           43183]
 gi|237723042|ref|ZP_04553523.1| transposase [Bacteroides sp. 2_2_4]
 gi|253570441|ref|ZP_04847849.1| transposase [Bacteroides sp. 1_1_6]
 gi|265764111|ref|ZP_06092679.1| transposase [Bacteroides sp. 2_1_16]
 gi|293372587|ref|ZP_06618969.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|299148364|ref|ZP_07041426.1| integrase [Bacteroides sp. 3_1_23]
 gi|317479065|ref|ZP_07938206.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|29339238|gb|AAO77035.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|167699518|gb|EDS16097.1| hypothetical protein BACSTE_00766 [Bacteroides stercoris ATCC
           43183]
 gi|229447564|gb|EEO53355.1| transposase [Bacteroides sp. 2_2_4]
 gi|251839390|gb|EES67473.1| transposase [Bacteroides sp. 1_1_6]
 gi|263256719|gb|EEZ28065.1| transposase [Bacteroides sp. 2_1_16]
 gi|291515084|emb|CBK64294.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
 gi|292632396|gb|EFF50992.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|298513125|gb|EFI37012.1| integrase [Bacteroides sp. 3_1_23]
 gi|301162793|emb|CBW22340.1| putative phage integrase [Bacteroides fragilis 638R]
 gi|316904721|gb|EFV26534.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 409

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 20/150 (13%)

Query: 162 LLYGC--GLRISEALSLTPQNIM-DDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYD 215
            L+ C  G   ++A+S+T +N+  DD+ +L ++    K D +  V LLP     I +Y D
Sbjct: 253 FLFACYTGTAYADAVSITRKNLFRDDEGSLWLKYQRKKTDYLGRVKLLPEAVALIEKYRD 312

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
                   + +  LF      P +    +  ++ LR   GL      H  RHSFA+ + L
Sbjct: 313 --------DTRETLF-----PPQDYHTLRANMKSLRLMAGLSQDLVYHMGRHSFASLVTL 359

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             G  + +I  +LGH  + TTQIY  V  K
Sbjct: 360 EEGVPIETICKMLGHSNIKTTQIYARVTPK 389


>gi|54023527|ref|YP_117769.1| putative phage integrase [Nocardia farcinica IFM 10152]
 gi|54015035|dbj|BAD56405.1| putative phage integrase [Nocardia farcinica IFM 10152]
          Length = 290

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 69/154 (44%), Gaps = 5/154 (3%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVRKAI 210
           D R   +L L   CGLR +E   +  +++++D     L + GKG K R +P+   +   I
Sbjct: 125 DPRTRIMLRLAAECGLRRAEVAQVHIRDLVEDFDGWVLIVHGKGGKDRRLPIPDDIAALI 184

Query: 211 -LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG-VFQRYIRQLRRYLGLPLSTTAHTLRHS 268
                   P D   +    LF G     L+   V     R L +        T H LRH 
Sbjct: 185 RAGARGHSPHDHTPSRGW-LFPGQDHGHLSAAHVGVLCSRALAKVQTSGQVWTMHKLRHR 243

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           FAT       D+R++Q  LGH  ++TTQIYT V+
Sbjct: 244 FATTAYRATRDIRAVQEALGHSSVATTQIYTAVD 277


>gi|53714292|ref|YP_100284.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52217157|dbj|BAD49750.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 409

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 20/150 (13%)

Query: 162 LLYGC--GLRISEALSLTPQNIM-DDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYD 215
            L+ C  G   ++A+S+T +N+  DD+ +L ++    K D +  V LLP     I +Y D
Sbjct: 253 FLFACYTGTAYADAVSITRKNLFRDDEGSLWLKYQRKKTDYLGRVKLLPEAVALIEKYRD 312

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
                   + +  LF      P +    +  ++ LR   GL      H  RHSFA+ + L
Sbjct: 313 --------DTRETLF-----PPQDYHTLRANMKSLRLMAGLSQDLVYHMGRHSFASLVTL 359

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             G  + +I  +LGH  + TTQIY  V  K
Sbjct: 360 EEGVPIETICKMLGHSNIKTTQIYARVTPK 389


>gi|269121142|ref|YP_003309319.1| integrase family protein [Sebaldella termitidis ATCC 33386]
 gi|268615020|gb|ACZ09388.1| integrase family protein [Sebaldella termitidis ATCC 33386]
          Length = 263

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 135/310 (43%), Gaps = 59/310 (19%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI--TIQTIRQLSYTE 70
           ++++E +N LQ     +  S+ T+ +Y  D ++FL FL     E I   I   R+     
Sbjct: 3   KIIEEYKNTLQ----MKFFSQTTINAYMADIKKFLEFLPEKNLEIIPKEIHNYRKYLKNN 58

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
            +     R+   + +    +SL GI   LK  K  +++ + + L  R  K+   L  A+N
Sbjct: 59  YKVSTINRKVTTLNN--FFKSL-GIDVRLKAEKVHRMSIKDDFLTEREYKRL--LKFAIN 113

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           EK  +T+V  VL HT                     G+R+SE   +  +N+      + I
Sbjct: 114 EKIRITMV--VLAHT---------------------GIRVSELKYIHVENL--KTGIVEI 148

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ- 249
           + KG KIRI+ L  ++   + +Y   C             R I+   +   V + YI   
Sbjct: 149 ENKG-KIRIIILSKNLINILKKY---CGE-----------RNIKSGSI-IEVSRIYIHNS 192

Query: 250 LRRYL-----GLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           L++       GL  S   AH  RH FA   L    ++ ++  ILGH  L TT+IYT++N 
Sbjct: 193 LKQSAANARGGLKKSKVHAHAFRHLFAVQFLKKNNNIAALADILGHSSLETTRIYTSLNK 252

Query: 304 KNGGDWMMEI 313
           +   + + +I
Sbjct: 253 RQFQEMLEDI 262


>gi|258651476|ref|YP_003200632.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258652719|ref|YP_003201875.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258554701|gb|ACV77643.1| integrase family protein [Nakamurella multipartita DSM 44233]
 gi|258555944|gb|ACV78886.1| integrase family protein [Nakamurella multipartita DSM 44233]
          Length = 617

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 15/170 (8%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQST--LRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +L   G+R  E L LT   ++   S   LRI  GK    R VPL P ++  I  + +  P
Sbjct: 365 ILARTGMRKGELLGLTTDAVVQIGSAYWLRIPVGKLHNDRYVPLHPQLKTMIDNWLEQRP 424

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
              N ++   LF   RG+P+ P      ++      G+      H LRH+ AT  ++ G 
Sbjct: 425 DWQNSHL---LFTD-RGRPIPPTRVDHAVQTAATAAGI-GHVHPHQLRHTLATQAINRGM 479

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDW-------MMEIYDQTHPSI 321
            L +I ++LGH  +S T +Y  +  +   D        +  +Y Q  P++
Sbjct: 480 SLEAIAALLGHKTMSMTLVYARIADRTVADQYFTVTEKVQALYQQQQPAM 529


>gi|163855346|ref|YP_001629644.1| integrase/recombinase [Bordetella petrii DSM 12804]
 gi|163259074|emb|CAP41373.1| integrase/recombinase [Bordetella petrii]
          Length = 402

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 130/300 (43%), Gaps = 40/300 (13%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL-SYTEIRAFISK 77
           + +LQ+L  + G++  +L+++     +   FL  +  E+  +  I+ + SY E  A  S 
Sbjct: 115 EGFLQHLSAQ-GVAPGSLRTWRSRLFRLEYFLLHHGIEEFRLIRIQHINSYIESLAGFS- 172

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNLKKSNSLPRALN---EK 132
                    ++  +L  +K   +Y        ES  N + +   ++   LP   +    +
Sbjct: 173 -------SNTVGSTLRILKQLFQYACSNGFHVESFDNAIPIVRRQRRQRLPTVFSVGETE 225

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-Q 191
           + L+ +D         +  +  RN AI  LL   GLRIS+   L   +    ++ + I Q
Sbjct: 226 KILSAID--------RSNALGKRNYAIFLLLARMGLRISDVRGLMFHHFDWSRNVISIVQ 277

Query: 192 GKGDKIRIVPLLPSVRKAILEY------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            K  K   +P++  V  AI++Y      +  CP  L     +  F G     L   + Q+
Sbjct: 278 QKTKKPVDLPIMDEVGWAIIDYLRNGRPHSECP--LVFIKHIAPFDG-----LTSALHQQ 330

Query: 246 YIRQLRRY-LGLPLSTT--AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            ++ LRR  + +P +     H+LRHS AT LL     +++I   LGH  + +T  Y  VN
Sbjct: 331 MLQYLRRADIHVPANKPRGVHSLRHSLATTLLQKQVPIQTISHTLGHLDIGSTSGYVQVN 390


>gi|325523725|gb|EGD01985.1| integrase family protein [Burkholderia sp. TJI49]
          Length = 318

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 123/314 (39%), Gaps = 61/314 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R LS LT +    D   +  FL   T  +  +  +R     + R F     +  +  RS 
Sbjct: 2   RALSSLTTE----DAVAYRAFLRRPTPHERWVGPVRPRGAPDWRPF-----SGALSARSA 52

Query: 89  KRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSL--PRALNEKQAL---TLVDNV 141
             +LS + +  ++L +++  +      + +R+ + + +L    A  E + L    + D +
Sbjct: 53  AYALSVLGALFRWLIEQRYLLANPFAGVKVRDTRGATALDTSHAFTEGEWLLVRAIADGL 112

Query: 142 -----LLHTSHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDD---QSTLRI 190
                +   +  + W  A    + ++L   Y  GLR SE +  T   I  D    + L++
Sbjct: 113 EFRKPVSPAAPASGWTPAAAQRLRFILDFGYATGLRASELVGATLGGIETDAHGDAWLKV 172

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL--FRGIRGKPLNPG------- 241
            GKG K   V L P  R A+  Y         +  +LP+   R     PL P        
Sbjct: 173 IGKGSKAARVALPPLARTALDRYL--------VARRLPVTPARWRPDTPLIPSLAEDGAA 224

Query: 242 ---------VFQRYIRQLRRYLGLPLSTTA--------HTLRHSFATHLLSNGGDLRSIQ 284
                    V QR+  Q    +       A        H +RH+ ATH L+ G +L +++
Sbjct: 225 AITSVRLWKVMQRFFAQTAELVDAEHPALAQKLRQASPHWMRHTHATHALARGAELTTVR 284

Query: 285 SILGHFRLSTTQIY 298
             L H  +STT IY
Sbjct: 285 DNLRHASISTTSIY 298


>gi|294778055|ref|ZP_06743489.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294448113|gb|EFG16679.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 200

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 20/148 (13%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYY 214
           A ++ LY CGL +     LT +N+      L+ +    KG       ++P +   +L   
Sbjct: 48  AFIFCLY-CGLHLCNVKDLTFKNVDYANRLLKFEQSKAKGHSASSGVVIP-LNDGLLSII 105

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL---GLPLSTTAHTLRHSFAT 271
              P D N  I             +   ++   + ++R++   G+    + H  RHSFA 
Sbjct: 106 GEAPTDKNCLI------------FDLSTYESCYKSVKRWVKRAGIDKHMSWHCARHSFAV 153

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           ++L+NG ++++I S+LGH  L  T+ YT
Sbjct: 154 NILNNGTNIKTIASLLGHSGLKHTEKYT 181


>gi|238854267|ref|ZP_04644611.1| site-specific tyrosine recombinase XerS [Lactobacillus gasseri
           202-4]
 gi|238833078|gb|EEQ25371.1| site-specific tyrosine recombinase XerS [Lactobacillus gasseri
           202-4]
          Length = 356

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 12/166 (7%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI-MDDQ--STLRIQGKGDKIRI----VPLLPSVR 207
           R+ AI+ L+ G G+R+SE + +  +NI + D+    +R  G+ D + I    +P L   +
Sbjct: 189 RDIAIIALILGTGIRVSECVGVNVRNINLKDEMLDVVRKGGQKDSVPIADWTIPYLKKYQ 248

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           K   + Y     D+     L  + G + + +     ++ + +     G PL  T H LRH
Sbjct: 249 KIRTDRYHANKNDIAF--FLTRWHG-KTRRMTANAVEKMVNKYSAAFGKPL--TPHKLRH 303

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           + A+ L     D   +   LG    + T +YT+V+ K   D + +I
Sbjct: 304 TLASELYEVTKDQVLVAQQLGQKGTTATDLYTHVDQKKQKDALNKI 349


>gi|298529892|ref|ZP_07017294.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509266|gb|EFI33170.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 386

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 18/149 (12%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAI--LEY 213
           I+ +L   G R SE L     N   ++ T +I G   K  K R +PL  S  + +  ++Y
Sbjct: 232 IILMLLLTGARKSEVLKAKWHNFDFERRTWQIPGTDTKTGKTRTIPLSDSALEVLDKIKY 291

Query: 214 YDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
            D CP+   N + Q P             +F+ +    R+  GL      H LRHSF++ 
Sbjct: 292 VDGCPYVFPNPDTQKPF----------TAIFRSW-DTARKKAGLG-EVRIHDLRHSFSSF 339

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           L+++G  +  +  +LGH ++ TT  Y ++
Sbjct: 340 LINSGRSIYEVSELLGHTQIKTTMRYAHL 368


>gi|160885083|ref|ZP_02066086.1| hypothetical protein BACOVA_03081 [Bacteroides ovatus ATCC 8483]
 gi|293371572|ref|ZP_06617989.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|156109433|gb|EDO11178.1| hypothetical protein BACOVA_03081 [Bacteroides ovatus ATCC 8483]
 gi|292633455|gb|EFF52021.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 390

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 68/163 (41%), Gaps = 46/163 (28%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           A L+  Y  GLR S+  +LT  NI++      I           +  SV+          
Sbjct: 238 AFLFCCYA-GLRYSDFTNLTSANIVEFHQETWI-----------IYKSVKTG-------- 277

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST----------------- 260
                + ++LPL+    GK +   + QRY      +  L  ++                 
Sbjct: 278 -----MEVRLPLYLLFEGKGIQ--ILQRYKDDFNSFFKLKDNSNINKELNILAGLAKIDK 330

Query: 261 --TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             + HT RH+ AT LL NG ++ ++Q +LGH  + TTQ+Y N+
Sbjct: 331 RVSFHTARHTNATLLLYNGANITTVQKLLGHKSVKTTQVYANI 373


>gi|113476634|ref|YP_722695.1| phage integrase [Trichodesmium erythraeum IMS101]
 gi|110167682|gb|ABG52222.1| phage integrase [Trichodesmium erythraeum IMS101]
          Length = 189

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 4/149 (2%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG--DKIRIVPLLPSVRKAILE 212
           R+ AIL LL+   LR SE +++   +I     T+ I+GKG  DK RI     +V  A+ +
Sbjct: 25  RDYAILRLLWDNALRRSEVVAIDIGDISLSDRTIWIKGKGTQDKERITINHRTV-AALKD 83

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           Y  +    +N  + + L     G  L        +++    LG+    + H +RHS  TH
Sbjct: 84  YLSIRKGGINDLLFISLSSANWGNRLADDTVYNLVKRTCSELGIDKPMSPHKIRHSAITH 143

Query: 273 LLS-NGGDLRSIQSILGHFRLSTTQIYTN 300
            L  + GD+R +Q    H  + T  +Y +
Sbjct: 144 FLDKSDGDIRKVQQYSRHKNVQTVLVYDD 172


>gi|317480814|ref|ZP_07939897.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316903018|gb|EFV24889.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 409

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 20/150 (13%)

Query: 162 LLYGC--GLRISEALSLTPQNIM-DDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYD 215
            L+ C  G   ++ +S+T +N+  DD+ +L ++    K D +  V LLP     I +Y D
Sbjct: 253 FLFACYTGTAYADVVSITRENLFWDDEGSLWLKYRRKKTDYLGRVKLLPEALALIEKYRD 312

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
                   + +  LF      P +    +  ++ LR   GL      H  RHSFA+ + L
Sbjct: 313 --------DTRATLF-----PPQDYHTLRANMKSLRLMAGLSQDLVYHMGRHSFASLVTL 359

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             G  + +I  +LGH  + TTQ+Y  V  K
Sbjct: 360 EEGVPIETISKMLGHSNIKTTQVYARVTPK 389


>gi|290474148|ref|YP_003467025.1| fimbriae regulatory protein [Xenorhabdus bovienii SS-2004]
 gi|289173458|emb|CBJ80237.1| fimbriae regulatory protein [Xenorhabdus bovienii SS-2004]
          Length = 234

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 67/158 (42%), Gaps = 9/158 (5%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI--------RIVPLLPS 205
           ARN  ++++ +  G R+SE LSL   ++  D  +LR+Q   +          R + LL  
Sbjct: 26  ARNICMMFMGFIHGFRVSELLSLKLSDVDLDSRSLRVQRLKNGFSTIHPMVSREIQLLRQ 85

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
             K    Y    P   N  +   LF    G+ ++     + IRQ      L +    H L
Sbjct: 86  WLKGRPNYLPGTP-QANSEVSDWLFLSRSGQRMSRQQVYKIIRQTSLKAKLSICANPHML 144

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           RH+    L  NG D R IQ  LGH  +  T  YT  N+
Sbjct: 145 RHACGYALADNGVDTRLIQDYLGHRNIRHTVRYTASNA 182


>gi|253565241|ref|ZP_04842696.1| integrase [Bacteroides sp. 3_2_5]
 gi|251945520|gb|EES85927.1| integrase [Bacteroides sp. 3_2_5]
          Length = 395

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 17/155 (10%)

Query: 150 KWIDARNSAIL-YLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
           K ID +   +L Y L+ C  GLR S+   L   +I ++   + +     K   +  +P  
Sbjct: 240 KIIDEQEKEVLQYFLFSCYTGLRYSDLKMLKTSSIKNNILHINMH----KTNCLVSIPLS 295

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           +KA+     L P  +N      +FR    K  N     R ++Q+ +  G+P   T H  R
Sbjct: 296 QKAL----QLLPNKINSESDY-VFRVYCNKVTN-----RVLKQVGKRYGIPKKLTCHVAR 345

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H+FAT  +  G  +  +  +LGH  L TTQIY  +
Sbjct: 346 HTFATVSIILGIPIEVVSKLLGHSSLKTTQIYAKI 380


>gi|225870541|ref|YP_002746488.1| tyrosine recombinase XerC [Streptococcus equi subsp. equi 4047]
 gi|254799369|sp|C0MBC3|XERS_STRE4 RecName: Full=Tyrosine recombinase xerS
 gi|225699945|emb|CAW93891.1| tyrosine recombinase XerC [Streptococcus equi subsp. equi 4047]
          Length = 356

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 118/299 (39%), Gaps = 58/299 (19%)

Query: 58  ITIQTIRQLSYTEIRAFISKRR---------TQK-IGDRSLKRSLSGIKSFLKYLKKRKI 107
           + + T+  LS  ++ AFI   R         T+K +   ++ R+LS + S  KYL +   
Sbjct: 66  VDLTTLEHLSKKDMEAFILYLRERPSLNIYSTKKGVSQTTINRTLSALSSLYKYLTEEVE 125

Query: 108 TTESNILNMRNL-------KKSNSLP-RALNEKQALTLVDNVLLHTSHETKWID------ 153
                    RN+       KK  +L  RA N KQ L L D  +    +  K  +      
Sbjct: 126 NEHGEPYFYRNVMKKVATKKKRETLAARAENIKQKLFLGDETMAFLDYVDKEYEYKLSNR 185

Query: 154 ---------ARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVP 201
                     R+ AI+ LL   G+R+SEA++L  +++   M      R  GK D + +  
Sbjct: 186 AKASFRKNKERDLAIIALLLASGIRLSEAVNLDLKDVNLNMMLVEVTRKGGKRDSVNVAA 245

Query: 202 LLP-------SVRKA--ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
                     SVRK     E  D+  F       L  +RG+  + ++    ++ + +   
Sbjct: 246 FAKPHLEAYLSVRKDRYQAEKQDVAFF-------LTAYRGLPNR-IDASSIEKMVGKYSE 297

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGD 308
             G  +  T H LRH+ AT L         +   LGH     T +YT++     KN  D
Sbjct: 298 --GFKIRVTPHKLRHTLATRLYDTTKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|159904961|ref|YP_001548623.1| integrase family protein [Methanococcus maripaludis C6]
 gi|159886454|gb|ABX01391.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 295

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 86/185 (46%), Gaps = 27/185 (14%)

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQST 187
           L+EKQ  T++  V+ +  +            L+LL   G+RISE  ++   ++ ++D+S 
Sbjct: 115 LSEKQVATVLAKVMNYDYY---------VYTLFLL-KTGVRISEFQNILFNDVDLEDRSI 164

Query: 188 LRIQGKGDKIRIV----PLLPSVRKAILEYYDLCPFDLNLNIQLPLF----RGIRGKPLN 239
               GKG K R V     LL  ++K I        +  NLN++   F    +G +     
Sbjct: 165 YIRDGKGGKDRYVFIDNELLNHLKKYI-------AYRENLNLKTDCFFVTEQGKKVTNYA 217

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
              F+ Y++++ +   +P   T H  RH+F T    +  +L  +  I+GH  L+TT  Y 
Sbjct: 218 IDKFRDYLKEVTK-DKIPFDVTPHVFRHTFGTLACEDEMNLIVLSKIMGHSNLNTTSGYV 276

Query: 300 NVNSK 304
           + N +
Sbjct: 277 HSNKE 281


>gi|323139542|ref|ZP_08074588.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322395221|gb|EFX97776.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 189

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 14/158 (8%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-------QGKGDKIRIVPLLPSV 206
           ARN  +L L +  G+R++E  +L   +++   +T+R        Q KG   R V L+ S 
Sbjct: 26  ARNRCLLMLSWLAGMRVAEIAALKLSDVLAPDNTIRAEIQLSPEQTKGSSARTV-LISSQ 84

Query: 207 RKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            K+ LE Y   L P   N     PL     GK  +     + +  +    GL  +T+ H+
Sbjct: 85  LKSELEAYIKSLPP---NPAPDRPLIASKTGKRFSANGLCQVMLHIYDAAGLDRATS-HS 140

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            R +F T L   G ++R + ++ GH  + TTQ Y ++N
Sbjct: 141 GRRTFITTLAHKGVNVRVLAALAGHKHIGTTQRYIDLN 178


>gi|255693814|ref|ZP_05417489.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|260620384|gb|EEX43255.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 409

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 101/228 (44%), Gaps = 32/228 (14%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           +L+  L+ +K   +   K   + + +  + +  K+  S PRAL+ +    L D       
Sbjct: 184 TLRGYLAILKKICRIAYKEGHSEKYHFCHFKLPKQKESTPRALSRENFEKLRD------- 236

Query: 147 HETKWIDARNSAIL---YLLYGC--GLRISEALSLTPQNIM-DDQSTLRIQ---GKGDKI 197
              +  + R S I+     L+ C  G   ++A+S+T +N+  DD  +L ++    K D +
Sbjct: 237 --LEIPEKRRSHIITKDLFLFACYTGTAYADAVSITRENLFTDDGGSLWLKYRRKKTDYL 294

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
             V LLP     I +Y D        + +  LF      P +    +  ++ LR   GL 
Sbjct: 295 GRVKLLPEAVALIEKYRD--------DTRETLF-----PPQDYHTLRGNMKALRLMAGLS 341

Query: 258 LSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
                H  RHSFA+ + L  G  + +I  +LGH  + TTQIY  V+ K
Sbjct: 342 QDLVYHMGRHSFASLVTLEEGVPIETISKMLGHSNVRTTQIYARVSPK 389


>gi|254303994|ref|ZP_04971352.1| bacteriophage integrase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148324186|gb|EDK89436.1| bacteriophage integrase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 370

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 24/176 (13%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
             ++Y  +  GLR+ E L+L   +I D+  T+  Q    ++ ++ +         E+ DL
Sbjct: 199 DCLIYFTFYTGLRLGEVLALRWDDIKDNILTINRQ-YNKRVEVIDI--GKNNLTYEFKDL 255

Query: 217 CPFDLNLNIQLP---------------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
              +    I LP               L   I GKP +    QR +  L + L +   + 
Sbjct: 256 KTKNSKREIPLPIKILDLLKDLPKQFDLIFTINGKPFDRKRPQRRMISLCKTLKIEYRS- 314

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQ 316
            H++RHS+AT L      ++++QS++GH  +STT  IYT+V      D  +EI D+
Sbjct: 315 FHSIRHSYATRLFELDIPIKTVQSLMGHSDMSTTMDIYTHVMK----DKKLEILDK 366


>gi|322688580|ref|YP_004208314.1| phage integrase [Bifidobacterium longum subsp. infantis 157F]
 gi|320459916|dbj|BAJ70536.1| putative phage integrase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 343

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 118/301 (39%), Gaps = 31/301 (10%)

Query: 19  QNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++WL + L   RG S  T+++Y      ++ +L      + +           +  ++  
Sbjct: 13  RDWLHHWLPKVRGSSPKTVEAYRIGLESYVRWLETTEGTQRSHIGFGHFDRARLGRWVEW 72

Query: 78  RRTQK-IGDRSLKRSLSGIKSFLKY--LKKRKITTESNILNMRNLKKSNSLP-RALNEKQ 133
            RT++   DR++   ++ ++ FL +  L+   +T   N      +K     P   L E+ 
Sbjct: 73  MRTERGYSDRTIMLRMTTMRVFLDHAGLEHPALTALGNDAAGIRVKPPARKPVDHLGEEH 132

Query: 134 ALTLVDNVLLHTSHETKWI--DA---RNSAILYLLYGCGLRISEALSLTPQNI-MDDQST 187
              L+          T W   DA   RN  +L L+Y    RI E  +LT  ++ MD  + 
Sbjct: 133 TKALL----------TAWGTGDAKSRRNRMLLILMYDTAARIGELAALTIADVGMDKPAR 182

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           + + GK  K R+VPL    R  +  Y +   P     +   PLF   R   + P    R 
Sbjct: 183 VTLTGKRGKSRVVPLGERTRTHLAAYLEEFHPGPSMRDGDRPLFHSTRNGAIQPLSVDRI 242

Query: 247 IRQLRRYLG---------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
              L+             +P     H +R + A  L   G  L  I  +LGH  +STT  
Sbjct: 243 DEILKTAAARARRGTCPSMPERVHCHLIRRTRAMDLYQQGVPLPLIMQLLGHESMSTTSA 302

Query: 298 Y 298
           +
Sbjct: 303 F 303


>gi|29347856|ref|NP_811359.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253572433|ref|ZP_04849835.1| integrase [Bacteroides sp. 1_1_6]
 gi|29339758|gb|AAO77553.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251837848|gb|EES65937.1| integrase [Bacteroides sp. 1_1_6]
          Length = 409

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 20/150 (13%)

Query: 162 LLYGC--GLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD 215
            L+ C  G   ++ +S+T +N+  D+++ L ++ +  K      V LLP     I +Y D
Sbjct: 253 FLFACYTGTAYADVVSITRENLFTDEENNLWLKYRRKKTNYLGRVKLLPEALVLIEKYRD 312

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
                   + ++ LF      P +    +  ++ LR   GL      HT RHSFA+ + L
Sbjct: 313 --------DARMTLF-----PPQDYHTLRANMKSLRLMAGLSQDLVYHTARHSFASLITL 359

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             G  + +I  +LGH  + TTQIY  V  K
Sbjct: 360 EEGVPIETISKMLGHSNIKTTQIYARVTPK 389


>gi|116629648|ref|YP_814820.1| site-specific tyrosine recombinase XerS [Lactobacillus gasseri ATCC
           33323]
 gi|116095230|gb|ABJ60382.1| Site-specific recombinase XerD [Lactobacillus gasseri ATCC 33323]
          Length = 356

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 12/166 (7%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI-MDDQ--STLRIQGKGDKIRI----VPLLPSVR 207
           R+ AI+ L+ G G+R+SE + +  +NI + D+    +R  G+ D + I    +P L   +
Sbjct: 189 RDIAIIALILGTGIRVSECVGVNVRNINLKDEMLDVVRKGGQKDSVPIADWTIPYLKKYQ 248

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           K   + Y     D+     L  + G + + +     ++ + +     G PL  T H LRH
Sbjct: 249 KIRTDRYHANKNDIAF--FLTRWHG-KTRRMTANAVEKMVNKYSAAFGKPL--TPHKLRH 303

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           + A+ L     D   +   LG    + T +YT+V+ K   D + +I
Sbjct: 304 TLASELYEVTKDQVLVAQQLGQKGTTATDLYTHVDQKKQKDALNKI 349


>gi|15897309|ref|NP_341914.1| XerC/D integrase-recombinase protein (xerC/D) [Sulfolobus
           solfataricus P2]
 gi|284174561|ref|ZP_06388530.1| XerC/D integrase-recombinase protein (xerC/D) [Sulfolobus
           solfataricus 98/2]
 gi|13813520|gb|AAK40704.1| XerC/D integrase-recombinase protein (xerC/D) [Sulfolobus
           solfataricus P2]
 gi|261601982|gb|ACX91585.1| integrase family protein [Sulfolobus solfataricus 98/2]
          Length = 291

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 29/155 (18%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEY 213
           ++  I+ LL   GLR +E LS+  ++I  + + +R++  K  + RIV       K +L  
Sbjct: 136 KDKLIIRLLLDTGLRANELLSVLVKDIDLENNMIRVRNTKNGEERIV-FFTDETKLLLRK 194

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ-------RYIRQLRRYLGLPLSTTAHTLR 266
           Y                  I+GK     +F        R +++L + +G+ L    H LR
Sbjct: 195 Y------------------IKGKKAEDKLFDLKYDTLYRKLKRLGKKVGIDLR--PHILR 234

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H+FAT  L  G ++ ++Q +LGH  + TTQIYT++
Sbjct: 235 HTFATLSLKRGINVITLQKLLGHKDIKTTQIYTHL 269


>gi|167621189|ref|ZP_02389820.1| Fels-2 prophage protein [Burkholderia thailandensis Bt4]
          Length = 317

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 16/156 (10%)

Query: 153 DARNSAILYLLYGC---GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           + RN  +L +   C   G R  EA  L    I   Q    ++ K  K R VP+  ++ + 
Sbjct: 145 EGRNVHVLLISKVCLATGARWGEAEGLRRTQIKGGQIQF-VKTKSSKARSVPITDALERE 203

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           ++ ++     +   +    LF        +   F+  +   R  L LP     H LRH+F
Sbjct: 204 LIAHFG----NYGDSDTGRLFEA------SSSAFREAVE--RAGLVLPDGQLTHVLRHTF 251

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           A+H + NGG++ ++Q  LGH  L+ T  Y +++ ++
Sbjct: 252 ASHFMMNGGNILALQRALGHHSLTMTMRYAHLSPEH 287


>gi|320353143|ref|YP_004194482.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320121645|gb|ADW17191.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 393

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 18/151 (11%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI--LEYY 214
           A L LL GC  R  E L    +    ++ + RI   K  K R VPL  S  + +  L  +
Sbjct: 232 APLLLLLGC--RKRELLDSRWEEFDLERRSWRIPMSKSGKARHVPLSLSALEILRQLPRW 289

Query: 215 DLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
           + CP+ + N + +LP  +             R     R+  GLP     H LRHS A+++
Sbjct: 290 EGCPYVIPNPDTRLPFVQ-----------MHRAWDNARKAAGLP-DVRMHDLRHSMASNM 337

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +++G  +  +  +LGH +L TTQ Y +++ +
Sbjct: 338 VNSGRSIYEVAKVLGHSQLKTTQRYAHLSQE 368


>gi|227537674|ref|ZP_03967723.1| phage integrase family protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227242288|gb|EEI92303.1| phage integrase family protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 416

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)

Query: 152 IDARNSAILYLLYGC--GLRISEALSLTPQNIM---DDQSTLRIQ-GKGDKIRIVPLLPS 205
           I+   S +   L+ C  GL   +  +L+ +NIM   D +  L  +  K D +  VPLL  
Sbjct: 246 IERLQSVLDMFLFSCYTGLAYIDISNLSRENIMKGIDGKDWLMTKRQKTDTLVKVPLLYQ 305

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
               I++ Y   P         P+    R           Y++++    G+  + T H  
Sbjct: 306 A-STIIKNYKEHPVAKASGTIFPVISNQR--------MNGYLKEIADICGISKNLTFHLA 356

Query: 266 RHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           RH+FAT + LSNG  + S+  +LGH  + TTQIY  V
Sbjct: 357 RHTFATTVTLSNGVPIESVSKMLGHTSIRTTQIYAKV 393


>gi|119471652|ref|ZP_01614037.1| mobilizable transposon, int protein [Alteromonadales bacterium
           TW-7]
 gi|119445431|gb|EAW26718.1| mobilizable transposon, int protein [Alteromonadales bacterium
           TW-7]
          Length = 377

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 71/151 (47%), Gaps = 32/151 (21%)

Query: 162 LLYGC--GLRISEALSLTPQ--NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            L+GC  G+R S+   LT +   ++D ++T +                ++   L+Y  L 
Sbjct: 231 FLFGCLTGMRWSDIQKLTWEKLTMIDPRATFQ---------------HIKTKQLQYLHL- 274

Query: 218 PFDLNLNIQLP------LFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           P D  + +  P      +F+G++     N  + Q  +R      G+    T H  RH+FA
Sbjct: 275 PSDATMLLGTPGEDHERVFKGLKYSSYTNVALTQWMLRA-----GITKHITFHCARHTFA 329

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             +L+N  D+ ++  +LGH  L TTQIYT++
Sbjct: 330 VRMLTNDVDIYTVSKLLGHSELKTTQIYTDI 360


>gi|331006573|ref|ZP_08329863.1| Integrase [gamma proteobacterium IMCC1989]
 gi|330419606|gb|EGG93982.1| Integrase [gamma proteobacterium IMCC1989]
          Length = 328

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 20/156 (12%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           + ++ L    G R SEA  L   N+ D++  +    K  K R++P    +   +  Y   
Sbjct: 184 APVVRLCLATGSRWSEANGLKASNLFDNR-VIYSDTKNGKQRVIP----ITSKLSSYLRS 238

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
             F  N      LF   R        F++ +   R  + LP   + H LRH++A+H +  
Sbjct: 239 QAFPTNTG---RLFDSCRS------AFRKALE--RTSIELPQGQSTHVLRHTYASHFVMK 287

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           GGD+ ++++ILGH  L  T  Y +++     D+M +
Sbjct: 288 GGDILTLKNILGHSDLKVTMRYAHLSP----DYMQQ 319


>gi|308179940|ref|YP_003924068.1| integrase [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|308045431|gb|ADN97974.1| integrase [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 305

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 13/144 (9%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD----KIRIVPLL--PSVRKAILEYYD 215
           L+   G+R +EAL +TP +      TL I    D    K    P     SVRK  L++  
Sbjct: 140 LIAKTGIRFAEALGVTPADFDFAHQTLSISKTWDYKSAKSDFAPTKNNSSVRKVPLDWQT 199

Query: 216 LCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +  F      L    P+F  ++ K  N  V   Y+ +L ++  +P+  + H LRH+ A+ 
Sbjct: 200 VIQFSQLTKKLPEDHPIF--VQAKVYNDTV-NHYLERLCKHASIPV-ISVHGLRHTHASL 255

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQ 296
           LL  G  + S+   LGH  ++TTQ
Sbjct: 256 LLYAGVSIASVARRLGHSNMTTTQ 279


>gi|260641922|ref|ZP_05413998.2| integrase [Bacteroides finegoldii DSM 17565]
 gi|260624125|gb|EEX46996.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 436

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 20/150 (13%)

Query: 162 LLYGC--GLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD 215
            L+ C  G   ++ +S+T +N+  D+++ L ++ +  K      V LLP     I +Y D
Sbjct: 280 FLFACYTGTAYADVVSITRENLFTDEENNLWLKYRRKKTNYLGRVKLLPEALVLIEKYRD 339

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
                   + ++ LF      P +    +  ++ LR   GL      HT RHSFA+ + L
Sbjct: 340 --------DARMTLF-----PPQDYHTLRANMKSLRLMAGLSQDLVYHTARHSFASLITL 386

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             G  + +I  +LGH  + TTQIY  V  K
Sbjct: 387 EEGVPIETISKMLGHSNIKTTQIYARVTPK 416


>gi|163855610|ref|YP_001629908.1| integrase/recombinase [Bordetella petrii DSM 12804]
 gi|163855757|ref|YP_001630055.1| integrase/recombinase [Bordetella petrii DSM 12804]
 gi|163259338|emb|CAP41638.1| integrase/recombinase [Bordetella petrii]
 gi|163259485|emb|CAP41785.1| integrase/recombinase [Bordetella petrii]
          Length = 379

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 130/300 (43%), Gaps = 40/300 (13%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL-SYTEIRAFISK 77
           + +LQ+L  + G++  +L+++     +   FL  +  E+  +  I+ + SY E  A  S 
Sbjct: 92  EGFLQHLSAQ-GVAPGSLRTWRSRLFRLEYFLLHHGIEEFRLIRIQHINSYIESLAGFS- 149

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNLKKSNSLPRALN---EK 132
                    ++  +L  +K   +Y        ES  N + +   ++   LP   +    +
Sbjct: 150 -------SNTVGSTLRILKQLFQYACSNGFHVESFDNAIPIVRRQRRQRLPTVFSVGETE 202

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-Q 191
           + L+ +D         +  +  RN AI  LL   GLRIS+   L   +    ++ + I Q
Sbjct: 203 KILSAID--------RSNALGKRNYAIFLLLARMGLRISDVRGLMFHHFDWSRNVISIVQ 254

Query: 192 GKGDKIRIVPLLPSVRKAILEY------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            K  K   +P++  V  AI++Y      +  CP  L     +  F G     L   + Q+
Sbjct: 255 QKTKKPVDLPIMDEVGWAIIDYLRNGRPHSECP--LVFIKHIAPFDG-----LTSALHQQ 307

Query: 246 YIRQLRRY-LGLPLSTT--AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            ++ LRR  + +P +     H+LRHS AT LL     +++I   LGH  + +T  Y  VN
Sbjct: 308 MLQYLRRADIHVPANKPRGVHSLRHSLATTLLQKQVPIQTISHTLGHLDIGSTSGYVQVN 367


>gi|153805890|ref|ZP_01958558.1| hypothetical protein BACCAC_00130 [Bacteroides caccae ATCC 43185]
 gi|149130567|gb|EDM21773.1| hypothetical protein BACCAC_00130 [Bacteroides caccae ATCC 43185]
          Length = 267

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 22/154 (14%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR------IVPLLPSVRKAIL 211
           A ++ LY CGL   +   LT +N+      L+ +    K        ++PL  S+   I 
Sbjct: 115 AFIFCLY-CGLCFCDVKDLTYKNVDYANRLLKFEQSKTKGYSASSGVVIPLNDSLLSIIG 173

Query: 212 EYYDLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           E     P D N L   LP +              + +++  +  G+    + H  RHSFA
Sbjct: 174 E----APVDKNCLIFDLPTYESC----------CKSVKRWVKRAGIDKHISWHCARHSFA 219

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            ++L+NG +++++ S+LGH  L  T+ YT    K
Sbjct: 220 VNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 253


>gi|237718481|ref|ZP_04548962.1| site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229452188|gb|EEO57979.1| site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 406

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 16/166 (9%)

Query: 143 LHTSHETKWIDARNSAILYLLYGC---GLRISEALSLTPQNIMD----DQSTLRIQGKGD 195
           LH   E K+   R   +  +   C   GL  ++   L P++I      +    + + K +
Sbjct: 232 LHIIMEKKFKIPRLEIVRDIFVFCCLSGLAFTDIKHLRPEHITKGPNGENWIRKPREKTN 291

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            +  +PLL  +   I+E Y   P  +  N+ LP+       P N  +   Y++++    G
Sbjct: 292 NMCHIPLL-DIPALIVEKYKNNPICVQKNMVLPV-------PCN-QLMNSYLKEIADMCG 342

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +    T H  RH+FA   L+N   + +I  +LGH  + TT+IY  V
Sbjct: 343 ITKKLTTHVGRHTFACIALANKVSMETIARMLGHSDIRTTKIYAKV 388


>gi|229065294|ref|ZP_04200573.1| Tyrosine recombinase [Bacillus cereus AH603]
 gi|228715944|gb|EEL67681.1| Tyrosine recombinase [Bacillus cereus AH603]
          Length = 357

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 125/304 (41%), Gaps = 42/304 (13%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK---------RRTQKIGD 85
           TL +Y  D R F  +L   +E+ I  + I+ +S++++     K         +  Q + +
Sbjct: 43  TLLNYVYDFRVFFNWLL--SEQIIEFKPIKDISFSDLENLKKKDVENFMRFLKLQQNMQN 100

Query: 86  RSLKRSLSGIKSFLKYL------------------KKRKITTESNILNMRNLKKSNSLPR 127
            S+ R +S +KS  KYL                   K +I  +   LN R  +  + +  
Sbjct: 101 SSVNRKISALKSLFKYLTSLSENDDGECYFYRNVMAKIEIHKDKETLNARAKRMRSKIFH 160

Query: 128 ALNEKQALTLV--DNVLLHTSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIM 182
             ++++ L  +  ++    T H+  +      R+ AIL L  G G+R+SE   L  ++I 
Sbjct: 161 NDDDQEFLNYIKYEHEKSLTKHQLFYFLRDKDRDVAILSLFLGSGIRVSELADLRMEDIN 220

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-----NIQLPLFRGIRGKP 237
             +  + +  KG+K   V + P     +  Y ++      L     N+ L  ++    +P
Sbjct: 221 LKERLIDVIRKGNKEDSVWITPIALNDLENYMEIRDKKYALGKELKNVFLSKYKHT-AQP 279

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+    Q  + +  +  G  +S   H LRH+ A  L     D   +   LGH    T  +
Sbjct: 280 LSVRAIQDIVEKYTKAYGKRMS--PHKLRHTLANKLYMEEKDSLQVMQQLGHTSQDTALL 337

Query: 298 YTNV 301
           YT +
Sbjct: 338 YTQL 341


>gi|167951297|ref|ZP_02538371.1| Site-specific recombinase XerD [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 286

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 79/179 (44%), Gaps = 24/179 (13%)

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQST----LRIQGKGDKIRIVPLL 203
           ++  R++AIL +  GCGLR+S    L   +++   DD+      +R++ KGD  R VP  
Sbjct: 18  FLGVRDAAILSVFIGCGLRLSGVCRLNESDLVWAADDRGMERLIIRVREKGDHQRFVPAP 77

Query: 204 PSVR---KAILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQL--------- 250
              R   +A L + +L   D  L +    LF   +     P  +    R++         
Sbjct: 78  HETRLLIRAYLGHEELARIDRMLPDGDQVLFVSTKDMKTPPHEYYGEARRISTRSVGEMV 137

Query: 251 RRY---LGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +Y    G+P      H LRH + T L  +   L  IQ+++GH    TT+ Y +V   N
Sbjct: 138 EKYGDQAGIPRDQCHPHALRHLYGTELTEDDVQLLKIQALMGHKDPKTTKDYVHVARAN 196


>gi|265753987|ref|ZP_06089342.1| site-specific recombinase [Bacteroides sp. 3_1_33FAA]
 gi|333029237|ref|ZP_08457298.1| integrase family protein [Bacteroides coprosuis DSM 18011]
 gi|263235701|gb|EEZ21225.1| site-specific recombinase [Bacteroides sp. 3_1_33FAA]
 gi|332739834|gb|EGJ70316.1| integrase family protein [Bacteroides coprosuis DSM 18011]
          Length = 420

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 68/147 (46%), Gaps = 21/147 (14%)

Query: 160 LYLLYGC--GLRISEALSLTPQNIMDDQST---LRIQGKGDKIRIVPLLPSVRKAILEYY 214
           L   + C  GLRIS+  +L   NIM ++ T   + +Q K  ++  VP+  +    +    
Sbjct: 239 LAFGFACLTGLRISDIRALRWSNIMRNEVTNTLVIVQKKTKELNAVPICSTAEAWMPPKK 298

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           D   F       LP    +             ++++ + +G+  + + HT RH+F T + 
Sbjct: 299 DDKVF------HLPAHANVDAA----------LKRIAKKVGITKTISFHTSRHTFGTLIQ 342

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  GD+ + + ++GH  L +T +Y +V
Sbjct: 343 AATGDIETTKKLMGHKSLKSTAVYADV 369


>gi|253565735|ref|ZP_04843190.1| transposase [Bacteroides sp. 3_2_5]
 gi|251946014|gb|EES86421.1| transposase [Bacteroides sp. 3_2_5]
          Length = 217

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 20/151 (13%)

Query: 162 LLYGC--GLRISEALSLTPQNIM-DDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYD 215
            L+ C  G   ++A+S+T +N+  DD+ +L ++    K D +  V LLP     I +Y D
Sbjct: 61  FLFACYTGTAYADAVSITRKNLFRDDEGSLWLKYQRKKTDYLGRVKLLPEAVALIEKYRD 120

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
                   + +  LF      P +    +  ++ LR   GL      H  RHSFA+ + L
Sbjct: 121 --------DTRETLF-----PPQDYHTLRANMKSLRLMAGLSQDLVYHMGRHSFASLVTL 167

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             G  + +I  +LGH  + TTQIY  V  K 
Sbjct: 168 EEGVPIETICKMLGHSNIKTTQIYARVTPKK 198


>gi|282852244|ref|ZP_06261596.1| site-specific tyrosine recombinase XerS [Lactobacillus gasseri
           224-1]
 gi|282556663|gb|EFB62273.1| site-specific tyrosine recombinase XerS [Lactobacillus gasseri
           224-1]
          Length = 346

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 12/158 (7%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI-MDDQ--STLRIQGKGDKIRI----VPLLPSVR 207
           R+ AI+ L+ G G+R+SE + +  +NI + D+    +R  G+ D + I    +P L   +
Sbjct: 189 RDIAIIALILGTGIRVSECVGVNVRNINLKDEMLDVVRKGGQKDSVPIADWTIPYLKKYQ 248

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           K   + Y     D+     L  + G + + +     ++ + +     G PL  T H LRH
Sbjct: 249 KIRTDRYHANKNDIAF--FLTRWHG-KTRRMTANAVEKMVNKYSAAFGKPL--TPHKLRH 303

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           + A+ L     D   +   LG    + T +YT+V+ KN
Sbjct: 304 TLASELYEVTKDQVLVAQQLGQKGTTATDLYTHVDQKN 341


>gi|239621712|ref|ZP_04664743.1| phage family integrase [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239515587|gb|EEQ55454.1| phage family integrase [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 309

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 75/155 (48%), Gaps = 19/155 (12%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY 213
           ++ L+   GLR SEAL LTP +      TL +    +       +P     SVRK  L++
Sbjct: 142 LILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWNYKNGGGFVPTKNASSVRKVQLDW 201

Query: 214 YDLCPFDL---NLNIQLPLFRGIRGKPLNP---GVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             +    +   +L    P+F  + GK  N    G+  R+ +Q     G+P+  + H LRH
Sbjct: 202 QLIMQLSVLLKSLPGDKPIF--VDGKVYNSTANGILARHCKQA----GVPV-ISIHGLRH 254

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNV 301
           + A+ LL  G  + S+   LGH  ++TTQ IY +V
Sbjct: 255 THASLLLFAGVSIASVSKRLGHASMNTTQEIYLHV 289


>gi|238788398|ref|ZP_04632192.1| Integrase [Yersinia frederiksenii ATCC 33641]
 gi|238723644|gb|EEQ15290.1| Integrase [Yersinia frederiksenii ATCC 33641]
          Length = 334

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 27/155 (17%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           + ++ L    G R SEA SLT   +M  + T   + KG + R +P               
Sbjct: 195 ATVVRLCLATGARWSEAESLTHTQVMPYKVTY-TKTKGKRNRSIP--------------- 238

Query: 217 CPFDLNLNIQLPLFRGIRGKP--LNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHL 273
                   I   LF  +  K   L P  +  +   L+R  + LP    +H LRH+FA+H 
Sbjct: 239 --------ISEELFNSLPKKNGRLFPSCYAAFRTALKRTNIKLPDRQCSHVLRHTFASHF 290

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +  GG++  +Q ILGH  +  T  Y +   ++  D
Sbjct: 291 MMKGGNILVLQRILGHTDIKMTMRYAHFAPEHLDD 325


>gi|325300611|ref|YP_004260528.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324320164|gb|ADY38055.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 410

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 40/71 (56%)

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           Y++++    G+    T H  RH+FAT +LS G  + S+  +LGH  + TTQIY  + +K 
Sbjct: 326 YLKEIADLCGIKKRLTYHLARHTFATMMLSKGVPVESVSKMLGHANIKTTQIYARITNKK 385

Query: 306 GGDWMMEIYDQ 316
               MM + ++
Sbjct: 386 IEHDMMNLSEK 396


>gi|317505556|ref|ZP_07963469.1| integrase [Prevotella salivae DSM 15606]
 gi|315663327|gb|EFV03081.1| integrase [Prevotella salivae DSM 15606]
          Length = 406

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 141/324 (43%), Gaps = 63/324 (19%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEIRAFISKRRT 80
           + + I+R L    L++Y+      L  L  Y ++K  +  I   QL  T I  F      
Sbjct: 123 ERIGIDRALKTFKLRTYQ------LSLLREYVQKKHKVSDIPLSQLDNTFIEGF----EY 172

Query: 81  QKIGDRSLKRS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
               DR LKRS     +S +++ ++   K+ +      L   + ++    PR++ +++  
Sbjct: 173 YLTIDRRLKRSSISSTVSTLQTIVRMAVKKGVLDFYPFLGY-SYERPKGEPRSITKEELE 231

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGK 193
            +++        + +W + R    L++ + C  GL IS+  +L  +NI+ ++  L I+G+
Sbjct: 232 RIIE-------LKIEWENYRIVRDLFV-FSCFTGLAISDVRNLREENIVLEEGELCIKGR 283

Query: 194 GDKIRI---VPLLPSVRKAILEYY---------DLCPFDLNLNIQLPLFRGIRGKPLNPG 241
             K +    V +LP    AI+E Y         D+   D+ LN                 
Sbjct: 284 RMKTKTPYRVQVLPPAW-AIMERYRGKRAGFVFDVPTTDIILN----------------- 325

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTN 300
                +  ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQ+Y  
Sbjct: 326 ----GMHHIQRNIGMESPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAA 381

Query: 301 VNSKNGGDWMMEIYDQTHPSITQK 324
           V+S+     M  I  +   + T K
Sbjct: 382 VSSERIHRDMQAIQQRIQDTFTLK 405


>gi|58000293|ref|YP_190186.1| resolvase [Escherichia coli]
 gi|47716807|gb|AAT37583.1| resolvase [Escherichia coli]
          Length = 260

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 36/180 (20%)

Query: 153 DARNSAILYLLYGCGLRISEALSLT-------PQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           D     +L  L+  G RI+EAL+LT       P       +TL+ Q      R    LP+
Sbjct: 57  DLHRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLK-QRAEKAARTAGRLPA 115

Query: 206 VRKAILEYYDLCPFD----------LNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRY 253
             +A    + L P            +   +++PL R  +  G+     +++   R +R +
Sbjct: 116 GSQA----HRLVPLSDSQYVNQLEMMVATLKIPLERRNKRTGRTEKARIWEVTDRTVRTW 171

Query: 254 L----------GLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           L          G+  S   T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 172 LNEAVENAAADGVSFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSVSSTEVYTKV 231


>gi|296165947|ref|ZP_06848413.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295898700|gb|EFG78240.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 349

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 127/311 (40%), Gaps = 32/311 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N   N    RG S  T+++Y  D      FL    ++ + +  +      +   +   RR
Sbjct: 23  NAFLNHLAGRGFSAATVRAYAFDVANLSRFL---VQQAVGLAAVDAPLVFDWIDWQGVRR 79

Query: 80  TQKI--GDRS--------LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           T +   G RS        + R ++ +++  +YL    + T++ + + R  +      R L
Sbjct: 80  TDQPTGGHRSSTPPAASTVNRRVAAVRALFEYLVMTGVCTDNPVPSPRRGQGLRQSQRGL 139

Query: 130 -------NEKQALTLVDNV-LLHTSHETKWIDA--------RNSAILYLLYGCGLRISEA 173
                    +    LV     L  S  T  +DA        R+ A++ ++   GLR +EA
Sbjct: 140 LGHLGPGRARSGGRLVRQPQRLPESLSTNDVDAFLATLATHRDRAMVLVMLLGGLRSAEA 199

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRG 232
             L   ++   +  LR+ GKG K R VP+  +    +  Y     P  L       + RG
Sbjct: 200 RGLLLADVDMGRRRLRVIGKGGKERHVPVDAAFFTELAAYLRWERPPGLATPQCFVVLRG 259

Query: 233 -IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
              G P++    +   R+ R   G       H LRH++ T L + G DL ++++++GH  
Sbjct: 260 PTTGAPVSEAGLRSLFRRHRETSGA-TRVRPHRLRHTYGTELSAAGIDLLALRALMGHVS 318

Query: 292 LSTTQIYTNVN 302
             TT  Y +++
Sbjct: 319 PETTARYVHLS 329


>gi|118465318|ref|YP_880052.1| site-specific recombinase, phage integrase family protein
           [Mycobacterium avium 104]
 gi|118166605|gb|ABK67502.1| site-specific recombinase, phage integrase family protein
           [Mycobacterium avium 104]
          Length = 160

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 9/150 (6%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R   ++ L    GLR++E   +  ++I   +  + + GKG +   +PL   +  A L   
Sbjct: 4   RTRVMILLAALGGLRVAEISRVRGEDIDIAKPAIHVVGKGKRSAWLPLHVLLVDAALTMP 63

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
               +    N + P      G  ++       I    R  G+    T H LRH + T LL
Sbjct: 64  TRGWW-FPANSRRP------GDHVHSKSVSDIIGNAMRRAGV--RGTPHGLRHWYGTTLL 114

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            +G DLR++Q +L H  LSTTQIYT V  +
Sbjct: 115 DDGADLRTVQELLRHRSLSTTQIYTRVTDE 144


>gi|317488602|ref|ZP_07947146.1| phage integrase [Eggerthella sp. 1_3_56FAA]
 gi|325832826|ref|ZP_08165557.1| integrase/recombinase, phage integrase family protein [Eggerthella
           sp. HGA1]
 gi|316912296|gb|EFV33861.1| phage integrase [Eggerthella sp. 1_3_56FAA]
 gi|325485824|gb|EGC88286.1| integrase/recombinase, phage integrase family protein [Eggerthella
           sp. HGA1]
          Length = 266

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 14/173 (8%)

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILY------LLYGCGLRISEALSLTPQNIMDDQS 186
           Q    +DNV+    +ET          LY       L   G RISE   LT +++     
Sbjct: 83  QQKPFLDNVISQDEYETLRDGLLEDGDLYWHFVVRFLACTGARISELRRLTVESVR--VG 140

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQR 245
            L +  KG+K+R + +  S+++  L ++  C           +F G  G P++  G+   
Sbjct: 141 HLDLISKGEKLRRIYIPKSLQQDALLWFKQCSLGEGF-----VFVGPNGNPMSTRGLSLG 195

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             R  +RY   P     H+ RH FA + ++   D+  +  ++GH  + TT+IY
Sbjct: 196 LKRCAKRYGVNPDVVYPHSFRHRFAKNFIAKNPDIAFLADLMGHESIETTRIY 248


>gi|262381977|ref|ZP_06075115.1| integrase/site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|301310515|ref|ZP_07216454.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|262297154|gb|EEY85084.1| integrase/site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|300832089|gb|EFK62720.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 310

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 24/122 (19%)

Query: 181 IMDDQSTLRIQGKGDKIR----IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
           I++   T+  +  G+K+R    + P L   R+   EY         L     LFR     
Sbjct: 181 ILETAETMYKELSGEKVRDSGYLFPFLSGTREGREEY---------LEYNAALFR----- 226

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
                 F R ++ L+ + G+    T++T+RHSFA  L      +  I  +LGH  + TTQ
Sbjct: 227 ------FNRNLKALKEFAGITSDVTSYTIRHSFAMTLKEQNVPIEMISELLGHKSIKTTQ 280

Query: 297 IY 298
           IY
Sbjct: 281 IY 282


>gi|238760589|ref|ZP_04621720.1| Integrase [Yersinia aldovae ATCC 35236]
 gi|238701208|gb|EEP93794.1| Integrase [Yersinia aldovae ATCC 35236]
          Length = 345

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 23/143 (16%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I+ +    G R SEA  L    +M ++ T  I  K  K R VP+   + K I +      
Sbjct: 202 IVRICLATGARWSEAEQLRQAQVMPNKITY-INTKSKKNRTVPISTELHKLIPK------ 254

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNG 277
                         I+G+ L    +  + + + R  L LP     H LRH+FA+H + NG
Sbjct: 255 --------------IKGR-LFGNAYDAFGQAIDRAKLVLPTGQLTHVLRHTFASHFMMNG 299

Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300
           G++  +Q ILGH  +  T  Y++
Sbjct: 300 GNILVLQQILGHSTIQMTMRYSH 322


>gi|313157316|gb|EFR56741.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 409

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 2/64 (3%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV-NSK 304
           +R + R  GL  + T H  RH+FAT + L+ G  L ++  +LGH R++TTQIY  + N K
Sbjct: 330 LRHVARLAGLSFNPTMHMARHTFATTVTLAQGVPLETVSKMLGHKRITTTQIYAQITNDK 389

Query: 305 NGGD 308
            G D
Sbjct: 390 IGRD 393


>gi|303236281|ref|ZP_07322874.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483493|gb|EFL46495.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 171

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 28/167 (16%)

Query: 148 ETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI---VPL 202
           E +W + R    L++ + C  GL IS+  +L  +NI+ ++  L I+G+  K +    V +
Sbjct: 2   EIEWENYRIVRDLFV-FSCFTGLAISDVRNLREENIVTEEGKLCIKGRRMKTKTPYRVQV 60

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL----NPGVFQRYIRQLRRYLGLPL 258
           LP     +  Y                 RGIR   +       +    +  ++R +G+  
Sbjct: 61  LPPALTIMNRY-----------------RGIRAGFVFDVPTTDIILNGMHHIQRNIGMET 103

Query: 259 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             T H  RH+FA+ + LS G  + ++  +LGH  L TTQ+Y  V+S+
Sbjct: 104 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSE 150


>gi|301308313|ref|ZP_07214267.1| mobilizable transposon, int protein [Bacteroides sp. 20_3]
 gi|300833783|gb|EFK64399.1| mobilizable transposon, int protein [Bacteroides sp. 20_3]
          Length = 118

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R+I     +L  P+  T HT RH+FAT +L+ G DL ++  +LGH  + TTQIY  +
Sbjct: 47  RFIFTCPLFLAQPI--TFHTSRHTFATMMLTLGADLYTVSKLLGHANVKTTQIYAKI 101


>gi|258512500|ref|YP_003185934.1| integrase family protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257479226|gb|ACV59545.1| integrase family protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 350

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 10/167 (5%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL---RIQGKGDKIR 198
           LL    + +W++ R+ AI  L+   GLRI EAL    +++   +  L    +  KG K R
Sbjct: 151 LLAVFDKRQWVEFRDLAITVLVLDTGLRIREALLAKVEDLDLREGALWVPPVHAKGGKGR 210

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGK--PLNPGVFQRYIRQLRRYLG 255
            V    + R+ + E+  L    +  ++  P ++  + G   PL+   + + + Q     G
Sbjct: 211 TVYFGQATRELLSEW--LRKRGVGSDLLFPSVYLDVSGAYHPLSRHAYWKRLAQYAERAG 268

Query: 256 LPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +P     H LRH+FA   L+ +GGDL ++   +GH    TT+ Y  V
Sbjct: 269 VP-HIHPHQLRHTFAIQFLVRSGGDLVTLARQMGHSSTRTTERYLAV 314


>gi|13475045|ref|NP_106608.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025795|dbj|BAB52394.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 358

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 113/245 (46%), Gaps = 17/245 (6%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RGL+  T+  +     +FL   A  +      Q +  L+   +  FI    ++++  ++L
Sbjct: 122 RGLAPATIGQHLGTIEEFLSLSAGPS------QDLSALTSEHVENFIHTL-SRRVLRQTL 174

Query: 89  KRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           +  ++ +++FL++   R K       ++     +    PRAL+ +     V   LL +  
Sbjct: 175 QHKVAHLRAFLRFCADRGKAARGLERIDTPRTYRGELPPRALDWE-----VIEKLLSSVA 229

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
            T ++  R+ AIL+L+   GLR SE  +LT   +   + TLR++ +  +  +V  L    
Sbjct: 230 RTDYLGRRDHAILHLMAYYGLRPSEIAALTLDAVNWKRRTLRVEQRKTRSTLVLPLADQT 289

Query: 208 KAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-STTAHT 264
             IL+ Y  D  P DL  N      R   G   + G+   + ++ R+  GLPL   +++ 
Sbjct: 290 LEILDRYIADGRPCDLVTNFLFAKVRSPVGALTSWGICDIFSKRARQS-GLPLDGVSSYA 348

Query: 265 LRHSF 269
           LRHSF
Sbjct: 349 LRHSF 353


>gi|320527997|ref|ZP_08029163.1| site-specific recombinase, phage integrase family [Solobacterium
           moorei F0204]
 gi|320131623|gb|EFW24187.1| site-specific recombinase, phage integrase family [Solobacterium
           moorei F0204]
          Length = 223

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 2/144 (1%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           RN  +L L    G RI   + LTP++I   Q T + + K  K++   +   V   + EY 
Sbjct: 60  RNYILLILGVNTGNRIETLIELTPRDIAGGQYTCK-EMKTGKVQQFNMNADVYATVREYI 118

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           +     +N  I     +G +G P+      R I+QL    G+      H+LR S+     
Sbjct: 119 ERYNIQMNEYI-FESRQGFKGYPITRQQAWRIIKQLADEAGIKYPVACHSLRKSYGRWYW 177

Query: 275 SNGGDLRSIQSILGHFRLSTTQIY 298
            +  DL + Q +L H   + T +Y
Sbjct: 178 DSTHDLLTTQKLLMHESAAETMLY 201


>gi|270339835|ref|ZP_06006154.2| integrase [Prevotella bergensis DSM 17361]
 gi|270333599|gb|EFA44385.1| integrase [Prevotella bergensis DSM 17361]
          Length = 470

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 101/223 (45%), Gaps = 29/223 (13%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L+ + S LK L KR I      +   +++     PR +  ++    V+ +   T +E + 
Sbjct: 243 LTMLASLLKDLHKRHIIDSYPFIG-HSIRWDVGTPRYITREE----VNKIAALTDNELQG 297

Query: 152 IDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSV 206
            +  +  +   L+ C  GL  ++   LT ++I+ +     I+    K   +  +PLLP  
Sbjct: 298 YEQMSRDMF--LFSCYTGLSYTDVYHLTAEHIIHESDMDWIRKPRVKTGNVCHIPLLPEA 355

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGV--FQRYIRQLRRYLGLPLST 260
             AI+E Y          I    FR    K    P+ PG      +++++ R  G+  + 
Sbjct: 356 -SAIIERYR--------GIHTRAFRHEPPKGYLLPI-PGCDTLNIHLKKIARLCGIQKTL 405

Query: 261 TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           T H  RH+FA+ + LS G  + S+  +LGH ++ TTQ+Y   +
Sbjct: 406 TYHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETS 448


>gi|171741094|ref|ZP_02916901.1| hypothetical protein BIFDEN_00161 [Bifidobacterium dentium ATCC
           27678]
 gi|171276708|gb|EDT44369.1| hypothetical protein BIFDEN_00161 [Bifidobacterium dentium ATCC
           27678]
          Length = 286

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 91/211 (43%), Gaps = 30/211 (14%)

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + S+  +     + +++  + + ++  S   PR   E      +D            +  
Sbjct: 86  LTSYFDWCVDHDLRSDNPAIGLPHVAGSKPHPRPCPETGIREAMDG-----------LSE 134

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           R+  ++ L    GLR SE   ++ ++++   D + LR+ GKGDK R++PL          
Sbjct: 135 RDRLMVRLGAELGLRRSEIAKVSGRDVVGPADNALLRVVGKGDKQRLIPL---------- 184

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFA 270
                P DL + I+      +     + G+      ++ + +G  LP S   H+LRH  A
Sbjct: 185 -----PQDLAVRIRQTGDGWLFPSRNDHGISHLTAGRVGKIVGSALPQSYGTHSLRHRAA 239

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T       DL ++ ++LGH  ++TTQ Y  +
Sbjct: 240 TQAYLATHDLLAVSTLLGHSSVATTQRYVAM 270


>gi|290474154|ref|YP_003467031.1| fimbriae regulatory protein [Xenorhabdus bovienii SS-2004]
 gi|289173464|emb|CBJ80243.1| fimbriae regulatory protein [Xenorhabdus bovienii SS-2004]
          Length = 234

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 67/158 (42%), Gaps = 9/158 (5%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI--------RIVPLLPS 205
           ARN  ++++ +  G R+SE LSL   ++  D  +LR+Q   +          R + LL  
Sbjct: 26  ARNICMMFMGFIHGFRVSELLSLKLSDVDLDSRSLRVQRLKNGFSTIHPMVSREIQLLRQ 85

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
             K    Y    P   N  +   LF    G+ ++     + IRQ      L +    H L
Sbjct: 86  WLKGRPNYLPGTP-QANSEVSDWLFLSRSGQRMSRQQVYKIIRQTSLKAKLSICANPHML 144

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           RH+    L  NG D R IQ  LGH  +  T  YT  N+
Sbjct: 145 RHACGYALADNGVDTRLIQDYLGHRNIRHTVRYTASNA 182


>gi|254426111|ref|ZP_05039828.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus
           sp. PCC 7335]
 gi|196188534|gb|EDX83499.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus
           sp. PCC 7335]
          Length = 352

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 130/299 (43%), Gaps = 27/299 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R L++ T + YE   RQF  + A    +++T + I +  Y +    +  ++   +   ++
Sbjct: 39  RELAENTRKVYERQLRQFYEW-AQKPWQQVTHRDIDR--YKQHLKALPSKQGGSLSPATI 95

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            +S++ +KSF K+L  +   + ++ L +  LK +   P+ L+E +   L D +      E
Sbjct: 96  NQSINSLKSFFKWLTVKDYISRNSTLTIEQLKDAPKPPKDLDEAEVDALFDGLNYRGESE 155

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQG-KGDKIRIVPLLPSV 206
                 R+ AIL LL   GLR  E  +L   NI D D   + + G K      VPL P  
Sbjct: 156 V-----RDLAILQLL-SHGLRAGEVSAL---NIEDYDGKRVHVLGAKWGSDGKVPLKPEA 206

Query: 207 RKAILEYYD-LCPFDLNLNIQLPLF----RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
             A+  Y   L    +    + PL     R  RGK L        +++L     L     
Sbjct: 207 IMALDSYLGWLVRQGMATTPESPLLVSLSRNSRGKRLGYRGIYDLVKELAAASELE-DVH 265

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGH--FRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
            H LRH+ AT L++ G D     SIL     R+ + +++   + +     M E +D+ +
Sbjct: 266 PHRLRHTCATSLVAQGMD-----SILAKRLVRIKSDRVFARYSDRALDIKMEEAFDELY 319


>gi|167625964|ref|YP_001676258.1| integrase family protein [Shewanella halifaxensis HAW-EB4]
 gi|167355986|gb|ABZ78599.1| integrase family protein [Shewanella halifaxensis HAW-EB4]
          Length = 313

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 79/180 (43%), Gaps = 19/180 (10%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           +AL+      L+    L   H    I  R+  IL L    GLR  E  +LT  +I  D+ 
Sbjct: 112 KALSSNSVGELITTCYLDKRH----IGKRDCCILALFLSTGLRRFELANLTVSDIHLDKR 167

Query: 187 TLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLC-------PFDLNLNIQLPLFRGIRGKPL 238
           TL ++ GKG K R  P  P+     L Y D         P DL   I   + +  RG   
Sbjct: 168 TLTVKSGKGKKPRKQPF-PT---WALTYIDSWLRVRTYQPGDLFNPIWNNVIKHDRGLSC 223

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              ++Q  I + R      ++ + H LR +F T LL+   DL +   + GH  ++TTQIY
Sbjct: 224 -AALYQ--IVKARTLEATGITISPHDLRRTFITELLNQKVDLSTASKLAGHANVTTTQIY 280


>gi|329922311|ref|ZP_08277988.1| putative site-specific tyrosine recombinase XerS [Paenibacillus sp.
           HGF5]
 gi|328942174|gb|EGG38445.1| putative site-specific tyrosine recombinase XerS [Paenibacillus sp.
           HGF5]
          Length = 360

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 123/290 (42%), Gaps = 54/290 (18%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK------------KR 105
           + ++T+R  S T  R +++ RR       ++ R LS ++S   YL             KR
Sbjct: 70  LELETLRMDSITGYRLYLTTRREGTNSRITVSRKLSSLRSLFHYLSQIAEDEDFYPLLKR 129

Query: 106 KITTESNILNMRNLKKSNS-LPRALNEKQAL----TLVDNVLLHT---------SHETKW 151
            I  +  I  +   K + + L   + E++ L    T +     H          +HE   
Sbjct: 130 NIMAKVEIKRIHKPKDTAAKLKGKILEEEELQDFITYIHEGYGHDVEKNKQALYAHEQNK 189

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG--DKIRIVPL-LPSVRK 208
           +  R++ I  L+   GLR+SE ++L   +I  +   L +  KG  D+    P+   +  K
Sbjct: 190 V--RDACIASLILNSGLRVSEVVNLNLADIDLNNKMLHVYRKGNNDETFKTPVYFRAQAK 247

Query: 209 AILEYYDLCPFDLNL---NIQLP-----LFRGIR-----GKPLNPGVFQRYIRQLRRYLG 255
             LE+Y      L L     ++P     LF  +R     G+ +     Q  I +  +  G
Sbjct: 248 DDLEHY------LQLRQTRYKVPKKEKALFVALRNGQNEGQRMTKRAIQAMIIKYAKRFG 301

Query: 256 LPLSTTAHTLRHSFAT-HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            P S T H LRHSFAT + L N  D+   +  LGH    TT++Y ++  K
Sbjct: 302 KP-SLTVHKLRHSFATDYYLQN--DIYKTKEQLGHASTETTEVYAHLTDK 348


>gi|317502577|ref|ZP_07960699.1| integrase [Prevotella salivae DSM 15606]
 gi|315666304|gb|EFV05849.1| integrase [Prevotella salivae DSM 15606]
          Length = 410

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 14/147 (9%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            ++ C  GL   +  +L P NI  +DD+  +  + +   +    LL  + ++I+  Y   
Sbjct: 249 FIFSCFTGLAYIDVSNLRPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPRSIIAKYSHK 308

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            +         LF  +  +  N      Y++++    G+  + T H  RH+FAT  LS G
Sbjct: 309 TYR-----DGKLFPILTNQKTNA-----YLKEIADLCGVKKNLTFHLARHTFATMSLSKG 358

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSK 304
             + S+  +LGH  + TTQIY  + +K
Sbjct: 359 VPMESVSKMLGHTNIKTTQIYARITNK 385


>gi|311110709|ref|ZP_07712106.1| site-specific recombinase, phage integrase family [Lactobacillus
           gasseri MV-22]
 gi|311065863|gb|EFQ46203.1| site-specific recombinase, phage integrase family [Lactobacillus
           gasseri MV-22]
          Length = 343

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 12/166 (7%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI-MDDQ--STLRIQGKGDKIRI----VPLLPSVR 207
           R+ AI+ L+ G G+R+SE + +  +NI + D+    +R  G+ D + I    +P L   +
Sbjct: 176 RDIAIIALILGTGIRVSECVGVNVRNINLKDEMLDVVRKGGQKDSVPIADWTIPYLKKYQ 235

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           K   + Y     D+     L  + G + + +     ++ + +     G PL  T H LRH
Sbjct: 236 KIRTDRYHANKNDIAF--FLTRWHG-KTRRMTANAVEKMVNKYSAAFGKPL--TPHKLRH 290

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           + A+ L     D   +   LG    + T +YT+V+ K   D + +I
Sbjct: 291 TLASELYEVTKDQVLVAQQLGQKGTTATDLYTHVDQKKQKDALNKI 336


>gi|307566491|ref|ZP_07628922.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307344802|gb|EFN90208.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 456

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 101/223 (45%), Gaps = 29/223 (13%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L+ + S LK L KR I      +   +++     PR +  ++    V+ +   T +E + 
Sbjct: 229 LTMLASLLKDLHKRHIIDSYPFIG-HSIRWDVGTPRYITREE----VNKIAALTDNELQG 283

Query: 152 IDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSV 206
            +  +  +   L+ C  GL  ++   LT ++I+ +     I+    K   +  +PLLP  
Sbjct: 284 YEQVSRDMF--LFSCYTGLSYTDVYHLTAEHIIHESDMDWIRKPRVKTGNVCHIPLLPEA 341

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGV--FQRYIRQLRRYLGLPLST 260
             AI+E Y          I    FR    K    P+ PG      +++++ R  G+  + 
Sbjct: 342 -SAIIERYK--------GIHTRAFRHEPPKGYLLPI-PGCDTLNIHLKKIARLCGIQKTL 391

Query: 261 TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           T H  RH+FA+ + LS G  + S+  +LGH ++ TTQ+Y   +
Sbjct: 392 TYHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETS 434


>gi|218688736|ref|YP_002396948.1| Integrase [Escherichia coli ED1a]
 gi|218426300|emb|CAR07125.1| Integrase [Escherichia coli ED1a]
          Length = 335

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 95/223 (42%), Gaps = 44/223 (19%)

Query: 87  SLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           S+ R L  + + F   +       E+ +  +R LK  N+    L++ +    +D +L   
Sbjct: 127 SVNRDLCALSAMFTSLIDAEVFHNENPVRGIRKLKVRNTEMAFLSDDE----IDRLL--- 179

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
             E    DAR  A+L L    G R  EA  L  ++I+ ++  +    K  K R VP+  +
Sbjct: 180 --ERLEGDARRVAVLCL--STGARWGEAAGLRGEHIVGNR-VMFFNTKNGKSRAVPVSDT 234

Query: 206 V------RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           V      RK  L Y            Q    R           F+  +++++    LP  
Sbjct: 235 VLSLIKTRKTGLLY------------QADYIR-----------FRDILQEVKP--DLPKG 269

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              H +RH+FATH + NGG++ ++Q ILGH  +  T  Y + +
Sbjct: 270 QATHVMRHTFATHFMMNGGNIVTLQRILGHTTIQQTMTYAHFS 312


>gi|170717887|ref|YP_001784941.1| phage integrase family protein [Haemophilus somnus 2336]
 gi|168826016|gb|ACA31387.1| phage integrase family protein [Haemophilus somnus 2336]
          Length = 308

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 83/178 (46%), Gaps = 19/178 (10%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + LN+ +  TL+    L+ + E  W        + L+   G+R SEAL+LTP++      
Sbjct: 116 KYLNQFELHTLITQ--LNLTKEINW-----DWFILLIAKTGMRFSEALALTPKDFDFSHQ 168

Query: 187 TLRIQG-----KGDKIRIVPLLPSVRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPL 238
           TL I        G   +      SVRK  L++  +  F     N   + P+F  +R K  
Sbjct: 169 TLTINKTWNYKDGGGFQPTKNRSSVRKIPLDWQTIIQFAELIKNKPEEQPIF--VRKKIF 226

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           N  V    IR+ ++   +P+  + H LRH+ A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 227 NSTVNNILIRRCKK-ANIPI-ISLHGLRHTHASLLLFAGVSIASVARRLGHSNMTTTQ 282


>gi|206976186|ref|ZP_03237095.1| transposition regulatory protein TnpA [Bacillus cereus H3081.97]
 gi|206745640|gb|EDZ57038.1| transposition regulatory protein TnpA [Bacillus cereus H3081.97]
          Length = 371

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 101/218 (46%), Gaps = 31/218 (14%)

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           S  K FL ++ + K     +I N+  +K+     R L ++Q    V  VL  T+      
Sbjct: 143 SRYKGFLHHVTQDK----PSIRNILKIKEPRKKVRTLTKEQ----VQQVLNTTT------ 188

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKGD-----KIRIVPLLP 204
           + R++ ++ LL+  GLRI E LSL  ++ + D +    +R+  +G+     K++      
Sbjct: 189 NIRDTFLIQLLFETGLRIGEVLSLFIEDFIFDHTKGHRIRLVNRGELENGAKLKTGEREI 248

Query: 205 SVRKAILEYYD------LCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLP 257
            V +++++ YD      +   D++ N      RG   GKP+         ++L++  GL 
Sbjct: 249 FVSQSLMDLYDDYLYEIIDELDVHTNFLFIKLRGENTGKPMTYSDVGSLFKRLKKKTGLN 308

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           L    H  RH+ AT       +++ +Q  LGH ++ TT
Sbjct: 309 LH--PHLFRHTHATIYYQKTKNIKQVQERLGHSQIQTT 344


>gi|324006765|gb|EGB75984.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 57-2]
          Length = 326

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 22/149 (14%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           D R  A+L L    G R  E  +L  + +   + T  ++ K  K R VP+   + K I  
Sbjct: 180 DDRRVALLCL--STGARWGEGSTLRGEQVNHGRVTF-LKTKNGKKRTVPISEELEKEI-- 234

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                      +   PLF+      ++   F   +RQ++    LP     H LRH+FA+ 
Sbjct: 235 ---------KTSDTGPLFK------VDYENFCERLRQVKP--DLPRGQATHVLRHTFASW 277

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            + NGG++ ++Q ILGH  +  T +Y ++
Sbjct: 278 FMMNGGNIIALQQILGHASIQQTMVYAHL 306


>gi|322688285|ref|YP_004208019.1| phage integrase [Bifidobacterium longum subsp. infantis 157F]
 gi|320459621|dbj|BAJ70241.1| phage integrase [Bifidobacterium longum subsp. infantis 157F]
          Length = 353

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 118/301 (39%), Gaps = 31/301 (10%)

Query: 19  QNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++WL + L   RG S  T+++Y      ++ +L      + +           +  ++  
Sbjct: 21  RDWLHHWLPKVRGSSPKTVEAYRIGLESYVRWLETTEGTQRSHIGFGHFDRARLGRWVEW 80

Query: 78  RRTQK-IGDRSLKRSLSGIKSFLKY--LKKRKITTESNILNMRNLKKSNSLP-RALNEKQ 133
            RT++   DR++   ++ ++ FL +  L+   +T   N      +K     P   L E+ 
Sbjct: 81  MRTERGYSDRTIMLRMTTMRVFLDHAGLEHPALTALGNDAAGIRVKPPARKPVDHLGEEH 140

Query: 134 ALTLVDNVLLHTSHETKWI--DA---RNSAILYLLYGCGLRISEALSLTPQNI-MDDQST 187
              L+          T W   DA   RN  +L L+Y    RI E  +LT  ++ MD  + 
Sbjct: 141 TKALL----------TAWGTGDAKSRRNRMLLILMYDTAARIGELAALTIADVGMDKPAR 190

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           + + GK  K R+VPL    R  +  Y +   P     +   PLF   R   + P    R 
Sbjct: 191 VTLTGKRGKSRVVPLGERTRTHLAAYLEEFHPGPSMRDGDRPLFHSTRNGAIQPLSVDRI 250

Query: 247 IRQLRRYLG---------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
              L+             +P     H +R + A  L   G  L  I  +LGH  +STT  
Sbjct: 251 DEILKTAAARARRGTCPSMPERVHCHLIRRTRAMDLYQQGVPLPLIMQLLGHESMSTTSA 310

Query: 298 Y 298
           +
Sbjct: 311 F 311


>gi|268526582|gb|ACZ05623.1| Int2 [Serratia proteamaculans]
          Length = 236

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 71/169 (42%), Gaps = 25/169 (14%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-------STLRIQGKGDKIRIVPLLPS 205
           D R   +   L+  G RI+EAL++TP++I+ D         TL+ +      R  P   +
Sbjct: 45  DLRRRMLFDFLWNTGARINEALAVTPKDIVLDAVKPFVVLRTLKQRNHTAGRRGRPGKDT 104

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------- 258
             K  L   D   F   L   L  F     KP    V++      R +L   L       
Sbjct: 105 PVKRTLPLLDPS-FARRLRDHLATFTRYVTKP----VWEISDDTARNWLKEALGNAQRNG 159

Query: 259 ------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                 S T HT RHSFA HLL N    + +QS +GH    +T+IYT V
Sbjct: 160 MHFSIESITPHTFRHSFAMHLLYNRVHPKILQSFMGHRDYKSTEIYTRV 208


>gi|160886644|ref|ZP_02067647.1| hypothetical protein BACOVA_04656 [Bacteroides ovatus ATCC 8483]
 gi|156107055|gb|EDO08800.1| hypothetical protein BACOVA_04656 [Bacteroides ovatus ATCC 8483]
          Length = 409

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 93/192 (48%), Gaps = 26/192 (13%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLT 177
           KK+ + PRAL+ +++   + +V +    ++  + AR+      L+GC  G+  ++ +S+T
Sbjct: 217 KKTETTPRALS-RESFEKIRDVEIPAYRKSHML-ARD----MFLFGCYTGVSYADVVSIT 270

Query: 178 PQNIMDDQST---LRIQGKGDKIRI-VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
             N+  D      L+ + K +++R  V LLP     I +Y        +     PL R  
Sbjct: 271 HANLQTDGDGALWLKYRRKKNELRASVKLLPEAIALINKYSSE-----DRETLFPLLRW- 324

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRL 292
                 P + +R+++ L    G+      H  RHSFA+ + L  G  + +I  +LGH  +
Sbjct: 325 ------PNL-RRHMKALAALAGIKDDLCYHQARHSFASLITLEAGVPIETISRMLGHSDI 377

Query: 293 STTQIYTNVNSK 304
           STTQ+Y  V+ K
Sbjct: 378 STTQVYARVSPK 389


>gi|11967381|gb|AAG42074.1|AF288684_1 integrase-like protein [Enterococcus faecium]
          Length = 278

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 9/146 (6%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           ++  + G G+R+SE   +T +     ++ + ++GK    R V L   +R  +L+Y     
Sbjct: 127 VMLTICGTGIRVSELQHITVEAAQTGRAEICMKGKN---RTVLLQKELRVRLLKYAKELG 183

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNG 277
            D     +  +FR   GKPL+       +++L     + P     H LRH FA    +  
Sbjct: 184 ID-----EGHIFRTRSGKPLDRTNICHDMKKLCASAKVDPRKVFPHNLRHLFARSFYAIE 238

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNS 303
            +L  +  ILGH R+ TT+IY   ++
Sbjct: 239 KNLAHLADILGHSRIETTRIYVAASA 264


>gi|317504686|ref|ZP_07962650.1| integrase [Prevotella salivae DSM 15606]
 gi|315664190|gb|EFV03893.1| integrase [Prevotella salivae DSM 15606]
          Length = 409

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 87/198 (43%), Gaps = 34/198 (17%)

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISE 172
           N++  +    LP+AL+ +    L++      +H  +  +   +A    ++ C  G    +
Sbjct: 212 NVKIARGDKKLPKALDRRSLDKLMN------THFGELEEEMETARDLFVFACHTGAAYCD 265

Query: 173 ALSLTPQNIM-DDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
            + L+  +++ DD+  L ++    KI +   + LLP   + I +Y               
Sbjct: 266 LMGLSKTHLVRDDEENLWMKFNRKKIGVLCRIKLLPEAIRIIEKY--------------- 310

Query: 229 LFRGIRGKPLNP----GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSI 283
             RG   + L P      +Q Y++ LR   G+    T HT RH+FAT + L  G  + ++
Sbjct: 311 --RGEERERLLPQMKYATYQSYLKALRLREGIAFPFTTHTARHTFATLITLEQGVPIETV 368

Query: 284 QSILGHFRLSTTQIYTNV 301
             ILGH  +S T+ Y  V
Sbjct: 369 SKILGHSNVSMTERYAKV 386


>gi|162958004|ref|YP_001621436.1| Int2 [Serratia entomophila]
 gi|155382591|gb|ABU23786.1| Int2 [Serratia entomophila]
          Length = 236

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 71/169 (42%), Gaps = 25/169 (14%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-------STLRIQGKGDKIRIVPLLPS 205
           D R   +   L+  G RI+EAL++TP++I+ D         TL+ +      R  P   +
Sbjct: 45  DLRRRMLFDFLWNTGARINEALAVTPKDIVLDAVKPFVVLRTLKQRNHTAGRRGRPGKDT 104

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------- 258
             K  L   D   F   L   L  F     KP    V++      R +L   L       
Sbjct: 105 PVKRTLPLLDPS-FARRLRDHLATFTRYVTKP----VWEISDDTARNWLKEALGHAQRNG 159

Query: 259 ------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                 S T HT RHSFA HLL N    + +QS +GH    +T+IYT V
Sbjct: 160 MHFSIESITPHTFRHSFAMHLLYNRVHPKILQSFMGHRDYKSTEIYTRV 208


>gi|220905498|ref|YP_002480810.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869797|gb|ACL50132.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 340

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 26/128 (20%)

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDK--IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
           SE  SL  Q++  D + +R++G   K   RI+PL P  +  +L+  D+         Q P
Sbjct: 201 SELFSLCWQDVDFDNNFIRVRGTKTKGSDRIIPLTPEFKARLLDKRDVA--------QSP 252

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-------HTLRHSFATHLLSNGGDLR 281
               + G         R I+  RR     L           + +RH FA+ +L+NGGDL+
Sbjct: 253 YIIEVNG---------RGIQHCRRAFKTALEKAKIDYPVRLYDIRHLFASTMLANGGDLK 303

Query: 282 SIQSILGH 289
           ++  +LGH
Sbjct: 304 AVSKLLGH 311


>gi|150004015|ref|YP_001298759.1| putative integrase [Bacteroides vulgatus ATCC 8482]
 gi|149932439|gb|ABR39137.1| putative integrase [Bacteroides vulgatus ATCC 8482]
          Length = 200

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 26/151 (17%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR------IVPLLPSVRKAIL 211
           A ++ LY CGLR      LT +N+      L+ +    K        ++PL   +   I 
Sbjct: 48  AFIFCLY-CGLRFCNVKDLTFKNVDYANRLLKFEQSKAKEHSASSGVVIPLNDGLLSIIG 106

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL---GLPLSTTAHTLRHS 268
           E     P D N  I             +   ++   + ++R++   G+    + H  RHS
Sbjct: 107 EA----PTDKNCLI------------FDLSTYESCCKSVKRWVKRAGIDKHISWHLARHS 150

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           FA ++L+NG +++++ S+LGH  L  T+ YT
Sbjct: 151 FAVNILNNGANIKTVASLLGHSGLKHTEKYT 181


>gi|85707318|ref|ZP_01038402.1| probable site-specific integrase/recombinase [Roseovarius sp. 217]
 gi|85707509|ref|ZP_01038585.1| probable site-specific integrase/recombinase [Roseovarius sp. 217]
 gi|85667966|gb|EAQ22851.1| probable site-specific integrase/recombinase [Roseovarius sp. 217]
 gi|85668199|gb|EAQ23076.1| probable site-specific integrase/recombinase [Roseovarius sp. 217]
          Length = 363

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 127/315 (40%), Gaps = 65/315 (20%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           + +L E ++W+      RG+   TL +Y+       + L    E           S   I
Sbjct: 73  WPILGEFRDWMLR---NRGVLDSTLDTYQNILVHMFLVLGDAPE---------AYSAHAI 120

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYL---KKRKITTESNILNMRNLKKSNSLPRA 128
           R F+  R     G    + +++  ++FL++L    +     +  I N    + +  +P  
Sbjct: 121 REFVLGRAGMH-GVAHARITVTATRAFLRFLIATGRCPAGRDQAIPNFAGWQLA-PVPDF 178

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           LN+    T +  ++   S E +    R+ A++  L   GLR SE  +L   +I  D    
Sbjct: 179 LND----TDITRIVAACSGEAR---LRDRAVILFLVRLGLRASEVANLEFDHI--DWRNG 229

Query: 189 RIQGKGDKIR---IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP--LNPGVF 243
           RI  +G K R    +PL   V +A+L Y D                  RG+P    P VF
Sbjct: 230 RIAIRGGKSRREEWLPLPQEVGEALLAYLD------------------RGRPSFATPRVF 271

Query: 244 ---QRYIRQLRRYLGLPLSTTA-------------HTLRHSFATHLLSNGGDLRSIQSIL 287
              +  +R + R+    L   A             H LRHS AT +L +G +L  + ++L
Sbjct: 272 VTAKNPMRPMSRFAVNCLVQAALDRAGIQSGRRGSHLLRHSAATAMLRHGVNLAGVGAVL 331

Query: 288 GHFRLSTTQIYTNVN 302
            H  LSTT  Y  V+
Sbjct: 332 RHRSLSTTMQYAKVD 346


>gi|256851408|ref|ZP_05556797.1| Lj965 prophage integrase [Lactobacillus jensenii 27-2-CHN]
 gi|260660829|ref|ZP_05861744.1| Lj965 prophage integrase [Lactobacillus jensenii 115-3-CHN]
 gi|282933142|ref|ZP_06338529.1| prophage integrase [Lactobacillus jensenii 208-1]
 gi|256616470|gb|EEU21658.1| Lj965 prophage integrase [Lactobacillus jensenii 27-2-CHN]
 gi|260548551|gb|EEX24526.1| Lj965 prophage integrase [Lactobacillus jensenii 115-3-CHN]
 gi|281302646|gb|EFA94861.1| prophage integrase [Lactobacillus jensenii 208-1]
          Length = 375

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 79/169 (46%), Gaps = 36/169 (21%)

Query: 162 LLYGCGLRISEALSLTPQNI------MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
           LL   GLR SEAL+LT  +I      +D   TL + G  +K+++ P  P  + +I +   
Sbjct: 205 LLASTGLRKSEALALTWSDIDFINGVIDVNKTLAV-GLDNKVQVQP--PKSKSSIRQ--- 258

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLS-------------- 259
             P   NL   L  ++    K L+  VF  Y     +YL L  P+               
Sbjct: 259 -VPISANLANVLNEYKN-SEKILSAKVFHTYTG---KYLSLSKPMKWLEAIYNKAPKDLK 313

Query: 260 -TTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTT-QIYTNVNSKN 305
             T H  RH+FAT L+S      +++Q +LGH  +  T  IYT++N+KN
Sbjct: 314 HITVHGFRHTFATLLISETNVKPKTVQMLLGHSNIQMTLDIYTHINNKN 362


>gi|154267925|gb|ABS72060.1| integrase-like protein [Ruminococcus gauvreauii]
          Length = 278

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 9/146 (6%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           ++  + G G+R+SE   +T +     ++ + ++GK    R V L   +R  +L+Y     
Sbjct: 127 VMLTICGTGIRVSELQHITVEAAQTGRAEICMKGKN---RTVLLQKELRVRLLKYAKELG 183

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNG 277
            D     +  +FR   GKPL+       +++L     + P     H LRH FA    +  
Sbjct: 184 ID-----EGHIFRTRSGKPLDRTNICHDMKKLCASAKVDPRKVFPHNLRHLFARSFYAIE 238

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNS 303
            +L  +  ILGH R+ TT+IY   ++
Sbjct: 239 KNLAHLADILGHSRIETTRIYVAASA 264


>gi|120401497|ref|YP_951326.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|120406881|ref|YP_956710.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|145221183|ref|YP_001131861.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
 gi|315441527|ref|YP_004074404.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|119954315|gb|ABM11320.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119959699|gb|ABM16704.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|145213669|gb|ABP43073.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
 gi|315265182|gb|ADU01923.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
          Length = 355

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 17/163 (10%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQ-GK-----GDKIRIVPLLP 204
           AR+ A+   LY  GLR  E+  L   ++  D+     L ++ GK     G + R VP+L 
Sbjct: 172 ARDYAMFRTLYHAGLRSEESALLEIPDVHFDRGPFGKLHVRFGKAAHMSGPRPRWVPMLD 231

Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-- 260
            +   +L+++  D+ P   N  +   LF    G  L+ G  +  +R L    G P +   
Sbjct: 232 GL-DVLLQWFLADVRPKFPNSPV---LFADESGGALHRGTIRNRLRYLMELEGRPATERF 287

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           + H LR + ATH    G DL +IQ +LGH+ +S+T  Y   ++
Sbjct: 288 SPHALRRACATHNYERGVDLVAIQQLLGHWTVSSTMRYVRPSA 330


>gi|189402582|ref|ZP_02783408.2| resolvase [Escherichia coli O157:H7 str. EC4401]
 gi|189354779|gb|EDU73198.1| resolvase [Escherichia coli O157:H7 str. EC4401]
          Length = 229

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 80/180 (44%), Gaps = 36/180 (20%)

Query: 153 DARNSAILYLLYGCGLRISEALSLT-------PQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           D     +L  L+  G RI+EAL+LT       P       +TL+ Q      R    +P+
Sbjct: 26  DLHRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLK-QRTEKAARTAGRMPA 84

Query: 206 VRKAILEYYDLCPFD----------LNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRY 253
            ++     + L P            +   +++P+ R  +  G+     +++   R +R +
Sbjct: 85  GQQT----HRLVPLSDAWFVSQLQTMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTW 140

Query: 254 LG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +G              +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 141 IGQAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 200


>gi|312889681|ref|ZP_07749229.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311297801|gb|EFQ74922.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 413

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 79/193 (40%), Gaps = 17/193 (8%)

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSH-ETKWIDARNSAILYLLYGC-GLRISEALSLTP 178
           K   +P   N K+AL   +   L+T+  E      +     +  Y C G+   +   L  
Sbjct: 203 KKYKIPTGQNIKKALDKSELKTLYTAKLEPGSFKEKARDFWFFSYQCNGMNFRDITELKY 262

Query: 179 QNIMDD------QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
           ++I           TL       K  IVPL  ++ KA++E Y   P  L  N   P+   
Sbjct: 263 KDINKKSFSFLRHKTLHTTKDKPKPIIVPLTETI-KAMIERYGTKP-ALPDNYVFPILDK 320

Query: 233 IRGKPLNPGVFQRYIR-------QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
              +     V Q +IR       +L + LGL    + +  RH+F T  + NG  +  IQ 
Sbjct: 321 SMDEKEKMRVNQNFIRFVNQHIQKLAKDLGLDTDISTYYARHTFTTTAIRNGAKMELIQE 380

Query: 286 ILGHFRLSTTQIY 298
            LGH  LSTTQ Y
Sbjct: 381 SLGHHSLSTTQNY 393


>gi|283455528|ref|YP_003360092.1| phage integrase [Bifidobacterium dentium Bd1]
 gi|283102162|gb|ADB09268.1| Phage integrase [Bifidobacterium dentium Bd1]
          Length = 244

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 90/209 (43%), Gaps = 30/209 (14%)

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + S+  +     + +++  + + ++  S   PR   E      +D            +  
Sbjct: 44  LTSYFDWCVDHDLRSDNPAIGLPHVAGSKPHPRPCPETGIREAMDG-----------LSE 92

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           R+  ++ L    GLR SE   ++ ++++   D + LR+ GKGDK R++PL          
Sbjct: 93  RDRLMVRLGAELGLRRSEIAKVSGRDVVGPADNALLRVVGKGDKQRLIPL---------- 142

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFA 270
                P DL + I+      +     + G+      ++ + +G  LP S   H+LRH  A
Sbjct: 143 -----PQDLAVRIRQTGDGWLFPSRNDHGISHLTAGRVGKIVGSALPQSYGTHSLRHRAA 197

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           T       DL ++ ++LGH  ++TTQ Y 
Sbjct: 198 TQAYLATHDLLAVSTLLGHSSVATTQRYV 226


>gi|315646660|ref|ZP_07899777.1| site-specific tyrosine recombinase XerS [Paenibacillus vortex V453]
 gi|315277986|gb|EFU41307.1| site-specific tyrosine recombinase XerS [Paenibacillus vortex V453]
          Length = 360

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 115/288 (39%), Gaps = 50/288 (17%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           + ++ +R  S T  R +++ RR       ++ R LS ++S   YL +     E   L  R
Sbjct: 70  MELEKLRMESITSYRLYLTTRRDGTNSRITVSRKLSSLRSLFHYLSQIAEDEEFYPLLKR 129

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTS---------HETKWID--------------- 153
           N+     + R    K     +   +L            HE    D               
Sbjct: 130 NIMAKVEIKRIHKPKDTAAKLKGKILEEEELQDFITYIHEGYGQDVENNKQALYAHELNK 189

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--QGKGDKIRIVPL-LPSVRKAI 210
            R++ I  L+   GLR+SE ++L   +I  +   L +  +G  D+    P+   +  K  
Sbjct: 190 VRDACIASLILNSGLRVSEVVNLNLADIDLNNKMLHVFRKGNNDETFKTPVYFRAQAKDD 249

Query: 211 LEYYDLCPFDLNL---NIQLP-----LFRGIR-----GKPLNPGVFQRYIRQLRRYLGLP 257
           LE+Y      L L     ++P     LF  +R     G+ +     Q  I +  +  G P
Sbjct: 250 LEFY------LQLRQTRYKVPKKEKALFVALRNGQHEGQRMTKRAIQAMIIKYAKRFGKP 303

Query: 258 LSTTAHTLRHSFAT-HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            S T H LRHSFAT + L N  D+   +  LGH    TT++Y ++  K
Sbjct: 304 -SLTVHKLRHSFATDYYLQN--DIYKTKEQLGHASTETTEVYAHLTDK 348


>gi|125624180|ref|YP_001032663.1| site-specific tyrosine recombinase XerS [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124492988|emb|CAL97951.1| putative tyrosine recombinase [Lactococcus lactis subsp. cremoris
           MG1363]
          Length = 357

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 136/323 (42%), Gaps = 70/323 (21%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRA--------FISKRR----TQ 81
           T+ +Y  D   F IFL +   EK+T  + +R++   E+ +        ++S RR     +
Sbjct: 37  TIDAYLND---FQIFLKWMINEKLTFGSEMREIKLDELNSLKKRDVENYLSYRRLGLMCK 93

Query: 82  KIGDR-----SLKRSLSGIKSFLKYLKKR------KITTESNILNMRNLKK--------- 121
           +  D+     ++ R+ + ++S  KYL +        +  E N++    LKK         
Sbjct: 94  EFSDKQTSQTTVIRNHAALRSLFKYLSEETENEYGDVYLEKNVMRKVKLKKVRDTLNYRA 153

Query: 122 SNSLPRALNEKQALTLVDNV-LLHTSHET----KWI----DARNSAILYLLYGCGLRISE 172
           S    R L E     L++ V   + SH T    +W       R+ AIL L    G+R SE
Sbjct: 154 SKLKGRLLLENDPHELLNFVEKKYESHTTSDVMRWKFLCNKKRDLAILALFLATGIRKSE 213

Query: 173 ALSLTPQN-IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            +    ++ +++D+ T+ +  K  K  +V + P  ++ ++EY         L  +  +  
Sbjct: 214 LIDTNVEDLVIEDKVTISVYRKEGKFDVVGVAPFAKRYLIEY---------LAQREKVGH 264

Query: 232 GIRGKPLNPGVFQRYIRQLRRY-------------LGLPLSTTAHTLRHSFATHLLSNGG 278
            + GK   P    +Y  Q++R                  +  T+H LRHSFAT+L     
Sbjct: 265 LLEGKE--PLFVTKYSNQIKRISDASVDSVVTKYTAAFNVRATSHDLRHSFATNLYRVSR 322

Query: 279 DLRSIQSILGHFRLSTTQIYTNV 301
               + + LGH    TT +Y ++
Sbjct: 323 SSGVVATQLGHNSTMTTDLYVHL 345


>gi|299146487|ref|ZP_07039555.1| integrase [Bacteroides sp. 3_1_23]
 gi|298516978|gb|EFI40859.1| integrase [Bacteroides sp. 3_1_23]
          Length = 409

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 71/149 (47%), Gaps = 18/149 (12%)

Query: 166 CGLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPFDL 221
           CGL  S+  +L  +NI       L I  K  K      VPLL  + K IL+ Y     D 
Sbjct: 253 CGLAYSDVANLRQENIQKSFDGNLWIITKRQKTNTDVNVPLL-DIPKMILKKYKGKLPDG 311

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDL 280
            +   LP+   I  + LN      Y++++    G+  + T H  RH+FAT   LS G  +
Sbjct: 312 KI---LPV---ISNQKLNA-----YLKEIADICGIKKNLTFHLARHTFATTTTLSKGVPI 360

Query: 281 RSIQSILGHFRLSTTQIYTNV-NSKNGGD 308
            ++  +LGH  + TTQIY  + NSK G D
Sbjct: 361 ETVSKMLGHTNIETTQIYARITNSKIGSD 389


>gi|293400410|ref|ZP_06644556.1| recombinase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306810|gb|EFE48053.1| recombinase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 375

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 28/153 (18%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----KGDKIRIVPLLPSVRKAILEYY 214
           IL ++Y  G R+SE   +  +++  D   L I+G    +  K R+VP+   ++  +L YY
Sbjct: 226 ILIMIY-TGFRVSELFQIKTKDV--DLQNLTIRGGNKTEAGKNRVVPIHERIQDYVLNYY 282

Query: 215 DL------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           ++      C  +    I    +R           F + +  L       ++   H  RH+
Sbjct: 283 NMGNEYLICDLETGAKINYHAYRN--------NYFDKIMNML------DMNHLPHDCRHT 328

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTN 300
           FAT L + G +  SI+ ++GH   +TT+ IYT+
Sbjct: 329 FATRLSNFGANATSIKRLIGHTSYATTEKIYTH 361


>gi|167762500|ref|ZP_02434627.1| hypothetical protein BACSTE_00855 [Bacteroides stercoris ATCC
           43183]
 gi|167699606|gb|EDS16185.1| hypothetical protein BACSTE_00855 [Bacteroides stercoris ATCC
           43183]
          Length = 409

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 91/192 (47%), Gaps = 26/192 (13%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLT 177
           K++   P+AL+ +++   + +V +   H T    AR+      L+ C  G+  S+A+++T
Sbjct: 217 KQTVKTPKALS-RESFEKIRDVEI-APHRTTHRLARD----LFLFACYTGVAYSDAVTVT 270

Query: 178 PQNIM---DDQSTLRIQGKGDKIRI-VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
            +N+    D +  L+ + K +++R  V LLP     I +Y+D     L   I  P  R  
Sbjct: 271 RENLYTGEDGKLWLKYRRKKNELRASVKLLPEAVALIEKYHDDSRDTLFPMIHYPSMRN- 329

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRL 292
                       +++ L    G+  +   H  RHSFA+ + L  G  + +I S+LGH  +
Sbjct: 330 ------------HMKALAVLAGIKENLCYHVGRHSFASLVTLEAGVPIETISSMLGHSNI 377

Query: 293 STTQIYTNVNSK 304
            TTQ+Y  V  K
Sbjct: 378 QTTQVYARVTPK 389


>gi|190404489|ref|YP_001961120.1| rcorf145 [Agrobacterium rhizogenes]
 gi|158322285|gb|ABW33702.1| rcorf145 [Agrobacterium rhizogenes]
          Length = 413

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 119/302 (39%), Gaps = 61/302 (20%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR-QLSYTEIRAFISKRRTQKIGDR 86
           ERGL+  T+ SY+  + +FL  +           T    + Y E  A      + K    
Sbjct: 130 ERGLAASTVGSYKLLSLRFLREVCPAGANGFAALTPEIVIGYVERHALDGSADSGK---- 185

Query: 87  SLKRSLSGI-KSFLKYLKKRKITTES---NILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
               ++ G+ ++ L+YL  +   + +    + ++R  + +  LP  L  ++   ++D   
Sbjct: 186 ----AMCGVVRALLRYLHLKGFISTALADCVPSIRRWRLAG-LPTFLPPEKVQKVLD--- 237

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
                 T  +  R+ A+L +L   GLR SE  +L   +I     T+ + GKG +   +PL
Sbjct: 238 --ACDRTTAMGHRDYAVLMILAKLGLRASEVATLNLDDIDWQSGTILVHGKGRRQATMPL 295

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTT 261
              V  AI+ Y                   IR G+P +    + ++R L  ++G      
Sbjct: 296 RHDVGTAIVAY-------------------IRHGRPAS-ACRRVFLRTLAPHVGFASGCA 335

Query: 262 ---------------------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                                AH  RHS AT LL +G     I  +L H  + +T+IY  
Sbjct: 336 ITMIAKQALERAGIDGYAHHGAHLFRHSLATDLLRSGASFAEIGQLLRHRSIDSTRIYAK 395

Query: 301 VN 302
           ++
Sbjct: 396 LD 397


>gi|146300455|ref|YP_001195046.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146154873|gb|ABQ05727.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 386

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 36/150 (24%)

Query: 166 CGLRISEALSLTPQNIM---DDQSTLRI-QGKGDKIRIVPLLPSVRKAILE--------- 212
            GLR S+   LT + IM   DD   +R  Q K + ++ +P+     + + E         
Sbjct: 244 TGLRYSDIAKLTWEEIMFIEDDGYYIRFKQKKTEGLQTIPISNEAYEILAEKAQPVKTGK 303

Query: 213 -YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
            ++DL  +D++  + + + R                       G+    T H  RH++AT
Sbjct: 304 VFFDLKKWDVDRALPVWIARA----------------------GIVKHITFHCFRHTYAT 341

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             +++G D+ ++  ++GH  + TTQIYT +
Sbjct: 342 LQIASGTDIFTVSKMMGHKSIKTTQIYTKI 371


>gi|295097795|emb|CBK86885.1| Site-specific recombinase XerD [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 258

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|239637254|ref|ZP_04678242.1| integrase [Staphylococcus warneri L37603]
 gi|239597210|gb|EEQ79719.1| integrase [Staphylococcus warneri L37603]
          Length = 407

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 85/208 (40%), Gaps = 32/208 (15%)

Query: 132 KQALTLVDNVLLHTSHETKWIDARN----SAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           K+ L   D ++ H  H ++    RN     AI+      G+RI E L++  +NI  +  T
Sbjct: 193 KELLNCFDYLIKHKKHSSR---KRNYQMVKAIVQFQVANGMRIGELLAIKRENINYEDKT 249

Query: 188 LRIQGKGDKI--------------------RIVPLLPS----VRKAILEYYDLCPFDLNL 223
           L I G  + +                    R + L       ++  ILE      ++   
Sbjct: 250 LDIDGTINWVTDKETGAFGVKETTKTSKSYRTIGLTTQSINLLKTLILENKKENQWNDKF 309

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             +  +F    G P++       I++      +  S T HTLRH+  + L   G +L++I
Sbjct: 310 IDRGYIFTNTAGSPIDLNKINNIIKEATEISSIKKSVTTHTLRHTHISTLAQLGINLKAI 369

Query: 284 QSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           Q  +GH    TT +IYT+V  +   D M
Sbjct: 370 QERVGHSDYKTTLEIYTHVTDQMAKDMM 397


>gi|29350025|ref|NP_813528.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341937|gb|AAO79722.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 420

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 33/47 (70%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           G+    T H  RHS+A+ LL NG D+ +I+S++GH  + TTQIYT++
Sbjct: 355 GIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHI 401


>gi|53712631|ref|YP_098623.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52215496|dbj|BAD48089.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 409

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 71/149 (47%), Gaps = 18/149 (12%)

Query: 166 CGLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPFDL 221
           CGL  S+  +L  +NI       L I  K  K      VPLL  + K IL+ Y     D 
Sbjct: 253 CGLAYSDVANLRQENIQKSFDGNLWIITKRQKTNTDVNVPLL-DIPKMILKKYKGKLPDG 311

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDL 280
            +   LP+   I  + LN      Y++++    G+  + T H  RH+FAT   LS G  +
Sbjct: 312 KI---LPV---ISNQKLNA-----YLKEIADICGIKKNLTFHLARHTFATTTTLSKGVPI 360

Query: 281 RSIQSILGHFRLSTTQIYTNV-NSKNGGD 308
            ++  +LGH  + TTQIY  + NSK G D
Sbjct: 361 ETVSKMLGHTNIETTQIYARITNSKIGSD 389


>gi|307564607|ref|ZP_07627144.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307346692|gb|EFN91992.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 417

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 100/223 (44%), Gaps = 29/223 (13%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L+ + S LK L KR I      +   +++     PR +  ++    V+ +   T +E + 
Sbjct: 190 LTMLASLLKDLHKRHIIDPYPFIG-HSIRWDVGTPRYITREE----VNKIAALTDNELQ- 243

Query: 152 IDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSV 206
            D    +    L+ C  GL  ++   LT ++I+ +     I+    K   +  +PLLP  
Sbjct: 244 -DYEQVSRDMFLFSCYTGLSYTDVYHLTAEHIIHESDMDWIRKPRVKTGNVCHIPLLPEA 302

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGV--FQRYIRQLRRYLGLPLST 260
             AI+E Y          I    FR    K    P+ PG      +++++ R  G+  + 
Sbjct: 303 -SAIIERYR--------GIHTRAFRHEPPKGYLLPI-PGCDTLNIHLKKIARLCGIQKTL 352

Query: 261 TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           T H  RH+FA+ + LS G  + S+  +LGH ++ TTQ+Y   +
Sbjct: 353 TYHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETS 395


>gi|62860892|gb|AAY16485.1| site-specific recombinase [Bifidobacterium breve]
          Length = 229

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 62/141 (43%), Gaps = 31/141 (21%)

Query: 166 CGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
           CGLR  E   +  +++M D    +L + GKGDK RIVP+   +   I   +  C      
Sbjct: 93  CGLRRLEIAKVHSRDVMRDLVGWSLVVVGKGDKQRIVPIGDDLALLIRSAHGYC------ 146

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST------TAHTLRHSFATHLLSNG 277
                           PG + R++     Y+G  LST      TAH+LRH +AT   +  
Sbjct: 147 ---------------FPGRWSRHVES--SYIGRRLSTLLGDGWTAHSLRHRYATTTYAAT 189

Query: 278 GDLRSIQSILGHFRLSTTQIY 298
            D   +  +LGH  + TTQ Y
Sbjct: 190 RDPLLVSKLLGHASVETTQRY 210


>gi|300070957|gb|ADJ60357.1| site-specific tyrosine recombinase XerS [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 351

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 136/323 (42%), Gaps = 70/323 (21%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRA--------FISKRR----TQ 81
           T+ +Y  D   F IFL +   EK+T  + +R++   E+ +        ++S RR     +
Sbjct: 31  TIDAYLND---FQIFLKWMINEKLTFGSEMREIKLDELNSLKKRDVENYLSYRRLGLMCK 87

Query: 82  KIGDR-----SLKRSLSGIKSFLKYLKKR------KITTESNILNMRNLKK--------- 121
           +  D+     ++ R+ + ++S  KYL +        +  E N++    LKK         
Sbjct: 88  EFSDKQTSQTTVIRNHAALRSLFKYLSEETENEYGDVYLEKNVMRKVKLKKVRDTLNYRA 147

Query: 122 SNSLPRALNEKQALTLVDNV-LLHTSHET----KWI----DARNSAILYLLYGCGLRISE 172
           S    R L E     L++ V   + SH T    +W       R+ AIL L    G+R SE
Sbjct: 148 SKLKGRLLLENDPHELLNFVEKKYESHTTSDVMRWKFLCNKKRDLAILALFLATGIRKSE 207

Query: 173 ALSLTPQN-IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            +    ++ +++D+ T+ +  K  K  +V + P  ++ ++EY         L  +  +  
Sbjct: 208 LIDTNVEDLVIEDKVTISVYRKEGKFDVVGVAPFAKRYLIEY---------LAQREKVGH 258

Query: 232 GIRGKPLNPGVFQRYIRQLRRY-------------LGLPLSTTAHTLRHSFATHLLSNGG 278
            + GK   P    +Y  Q++R                  +  T+H LRHSFAT+L     
Sbjct: 259 LLEGKE--PLFVTKYSNQIKRISDASVDSVVTKYTAAFNVRATSHDLRHSFATNLYRVSR 316

Query: 279 DLRSIQSILGHFRLSTTQIYTNV 301
               + + LGH    TT +Y ++
Sbjct: 317 SSGVVATQLGHNSTMTTDLYVHL 339


>gi|295087488|emb|CBK69011.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 409

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 71/149 (47%), Gaps = 18/149 (12%)

Query: 166 CGLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPFDL 221
           CGL  S+  +L  +NI       L I  K  K      VPLL  + K IL+ Y     D 
Sbjct: 253 CGLAYSDVANLRQENIQKSFDGNLWIITKRQKTNTDVNVPLL-DIPKMILKKYKGKLPDG 311

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDL 280
            +   LP+   I  + LN      Y++++    G+  + T H  RH+FAT   LS G  +
Sbjct: 312 KI---LPV---ISNQKLNA-----YLKEIADICGIKKNLTFHLARHTFATTTTLSKGVPI 360

Query: 281 RSIQSILGHFRLSTTQIYTNV-NSKNGGD 308
            ++  +LGH  + TTQIY  + NSK G D
Sbjct: 361 ETVSKMLGHTNIETTQIYARITNSKIGSD 389


>gi|288817618|ref|YP_003431965.1| phage integrase [Hydrogenobacter thermophilus TK-6]
 gi|288787017|dbj|BAI68764.1| phage integrase [Hydrogenobacter thermophilus TK-6]
 gi|308751216|gb|ADO44699.1| integrase family protein [Hydrogenobacter thermophilus TK-6]
          Length = 288

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 101/239 (42%), Gaps = 50/239 (20%)

Query: 80  TQKIGDRSLKRSLSGIKSFLK------YLKKRKITTESNILNM------RNLKKSNSLPR 127
           T  +   S+   LS IK F K      Y+ K K +   ++++       RN+ K    P+
Sbjct: 56  TSSLNTSSILTHLSAIKHFYKFAFRRGYVDKEKYSDIESVIDEVREDLGRNIAKR--YPK 113

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           AL E++   ++  V            A+   I  L    G+R+SE LSL   +   D+S 
Sbjct: 114 ALTEEEINKILSAVK----------GAKYEKIYVLFLYSGIRLSEYLSLRKSDFYQDKSG 163

Query: 188 L---RIQG---KGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGK 236
           L   R+     K  K R+VP+L S ++      D     +  ++ N  ++          
Sbjct: 164 LLWIRLSADITKRRKERLVPVLGSSKEETYAVIDRLLVWIESYEENFRVK---------- 213

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
               G  Q +  +L R L +P S   H+ RH++ T+L+++G     ++   GH  + TT
Sbjct: 214 ---RGSLQVFTNRLSRKLCIPFSL--HSFRHTYITNLVNSGFPAEVVKEFAGHSNVRTT 267


>gi|254426076|ref|ZP_05039793.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus
           sp. PCC 7335]
 gi|196188499|gb|EDX83464.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus
           sp. PCC 7335]
          Length = 326

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 128/299 (42%), Gaps = 27/299 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R L++ T + YE   RQF  ++     +++T + I +  Y +    +  +R   +   ++
Sbjct: 39  RELAENTRKVYERQLRQFYEWVK-KPWQQVTHRDIDR--YKQHLKALPSKRGGSLSPATI 95

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            +S++ +KSF K+L  +   + +  L +  LK +   P+ L+E +   L D +      E
Sbjct: 96  NQSINSLKSFFKWLTVKDYISRNPTLTIEQLKDAPKPPKDLDEAEVDALFDGLNYRGESE 155

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQG-KGDKIRIVPLLPSV 206
                 R+ AIL LL   GLR  E  +L   NI D D   + + G K      VPL P  
Sbjct: 156 V-----RDLAILQLL-SHGLRAGEVSAL---NIEDYDGKRVHVLGAKWGSDGKVPLKPEA 206

Query: 207 RKAILEYYD-LCPFDLNLNIQLPLF----RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
             A+  Y   L    +    + PL     R  RGK L        +++L     L     
Sbjct: 207 IMALDSYLGWLVRQGMATTPESPLLVSLSRNSRGKRLGYRGIYDLVKELAAASELE-DVH 265

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGH--FRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
            H LRH+ AT L++ G D     SIL     R+ + +++   +       M E +D+ +
Sbjct: 266 PHRLRHTCATSLVAQGMD-----SILAKRLVRIKSDRVFARYSDHALDMKMEEAFDELY 319


>gi|15609783|ref|NP_217162.1| integrase [Mycobacterium tuberculosis H37Rv]
 gi|15842187|ref|NP_337224.1| phage integrase family protein [Mycobacterium tuberculosis CDC1551]
 gi|148662487|ref|YP_001284010.1| phage integrase family protein [Mycobacterium tuberculosis H37Ra]
 gi|148823839|ref|YP_001288593.1| integrase [Mycobacterium tuberculosis F11]
 gi|167966927|ref|ZP_02549204.1| hypothetical integrase [Mycobacterium tuberculosis H37Ra]
 gi|215404613|ref|ZP_03416794.1| integrase [Mycobacterium tuberculosis 02_1987]
 gi|215412442|ref|ZP_03421188.1| integrase [Mycobacterium tuberculosis 94_M4241A]
 gi|215446906|ref|ZP_03433658.1| integrase [Mycobacterium tuberculosis T85]
 gi|253798270|ref|YP_003031271.1| integrase [Mycobacterium tuberculosis KZN 1435]
 gi|254365312|ref|ZP_04981357.1| hypothetical integrase [Mycobacterium tuberculosis str. Haarlem]
 gi|254551701|ref|ZP_05142148.1| integrase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|289553565|ref|ZP_06442775.1| integrase [Mycobacterium tuberculosis KZN 605]
 gi|289746449|ref|ZP_06505827.1| integrase [Mycobacterium tuberculosis 02_1987]
 gi|289758776|ref|ZP_06518154.1| phage integrase [Mycobacterium tuberculosis T85]
 gi|294994258|ref|ZP_06799949.1| integrase [Mycobacterium tuberculosis 210]
 gi|297635258|ref|ZP_06953038.1| integrase [Mycobacterium tuberculosis KZN 4207]
 gi|297732254|ref|ZP_06961372.1| integrase [Mycobacterium tuberculosis KZN R506]
 gi|298526121|ref|ZP_07013530.1| hypothetical integrase [Mycobacterium tuberculosis 94_M4241A]
 gi|306785454|ref|ZP_07423776.1| integrase [Mycobacterium tuberculosis SUMu003]
 gi|307085338|ref|ZP_07494451.1| integrase [Mycobacterium tuberculosis SUMu012]
 gi|313659587|ref|ZP_07816467.1| integrase [Mycobacterium tuberculosis KZN V2475]
 gi|1550687|emb|CAB02354.1| PROBABLE INTEGRASE [Mycobacterium tuberculosis H37Rv]
 gi|13882474|gb|AAK47038.1| phage integrase family protein [Mycobacterium tuberculosis CDC1551]
 gi|134150825|gb|EBA42870.1| hypothetical integrase [Mycobacterium tuberculosis str. Haarlem]
 gi|148506639|gb|ABQ74448.1| phage integrase family protein [Mycobacterium tuberculosis H37Ra]
 gi|148722366|gb|ABR06991.1| hypothetical integrase [Mycobacterium tuberculosis F11]
 gi|253319773|gb|ACT24376.1| integrase [Mycobacterium tuberculosis KZN 1435]
 gi|289438197|gb|EFD20690.1| integrase [Mycobacterium tuberculosis KZN 605]
 gi|289686977|gb|EFD54465.1| integrase [Mycobacterium tuberculosis 02_1987]
 gi|289714340|gb|EFD78352.1| phage integrase [Mycobacterium tuberculosis T85]
 gi|298495915|gb|EFI31209.1| hypothetical integrase [Mycobacterium tuberculosis 94_M4241A]
 gi|308329877|gb|EFP18728.1| integrase [Mycobacterium tuberculosis SUMu003]
 gi|308365129|gb|EFP53980.1| integrase [Mycobacterium tuberculosis SUMu012]
 gi|323718760|gb|EGB27919.1| integrase [Mycobacterium tuberculosis CDC1551A]
 gi|326904260|gb|EGE51193.1| integrase [Mycobacterium tuberculosis W-148]
 gi|328458042|gb|AEB03465.1| integrase [Mycobacterium tuberculosis KZN 4207]
          Length = 332

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 62/147 (42%), Gaps = 17/147 (11%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           D R   ++ L    GLR +EA      ++MD    L + GKG K RIVP        I +
Sbjct: 188 DRRIELMIRLAGEAGLRRAEAAQAHTGDLMDG-GLLLVHGKGGKRRIVP--------ISD 238

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           Y      D       P   G  G      V +   R       LP   T HTLRH +AT 
Sbjct: 239 YLAALIRDTPHGYLFP--NGTGGHLTAEHVGKLVSR------ALPGDATMHTLRHRYATR 290

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYT 299
                 +LR++Q +LGH  + TT+ YT
Sbjct: 291 AYRGSHNLRAVQQLLGHASIVTTERYT 317


>gi|303236998|ref|ZP_07323571.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302482807|gb|EFL45829.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 417

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 101/223 (45%), Gaps = 29/223 (13%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L+ + S LK L KR I      +   +++     PR +  ++    V+ +   T +E + 
Sbjct: 190 LTMLASLLKDLHKRHIIDSYPFIG-HSIRWDVGTPRYITREE----VNKIAALTDNELQG 244

Query: 152 IDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSV 206
            +  +  +   L+ C  GL  ++   LT ++I+ +     I+    K   +  +PLLP  
Sbjct: 245 YEQMSRDMF--LFSCYTGLSYTDVYHLTAEHIIHESDMDWIRKPRVKTGNVCHIPLLPEA 302

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGV--FQRYIRQLRRYLGLPLST 260
             AI+E Y          I    FR    K    P+ PG      +++++ R  G+  + 
Sbjct: 303 -SAIIERYR--------GIHTRAFRHEPPKGYLLPI-PGCDTLNIHLKKIARLCGIQKTL 352

Query: 261 TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           T H  RH+FA+ + LS G  + S+  +LGH ++ TTQ+Y   +
Sbjct: 353 TYHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETS 395


>gi|240143906|ref|ZP_04742507.1| integrase [Roseburia intestinalis L1-82]
 gi|257204099|gb|EEV02384.1| integrase [Roseburia intestinalis L1-82]
          Length = 270

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 101/235 (42%), Gaps = 40/235 (17%)

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN-----------------------EK 132
           + F++YL  ++IT +  +L    L++ +  P  +N                       + 
Sbjct: 29  EKFVRYLNGKEITKDRTMLYREKLREEDLSPATINLYVIAVNRYLRYLECGQASIKTLKV 88

Query: 133 QALTLVDNVLLHTSHETKWIDARNSA------ILYLLYGCGLRISEALSLTPQNIMDDQS 186
           Q    V+NV+    ++     A++S       I+  L   G+R+SE   +T + +  +  
Sbjct: 89  QKKRSVENVISRKEYQELLNYAKSSGRKKYYYIMRTLALTGIRVSELQYITVETL--ETG 146

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQR 245
            +++  KG KIR V  LP V   I E    C  +  N  I   +FRG  G P+N     +
Sbjct: 147 RVQVYNKG-KIRDV-YLPDV--LIRELKKFCREEKENDGI---IFRGRGGDPINRITVYK 199

Query: 246 YIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            I  L   +G+       H+ RH FA   +   G+L  +  +LGH  + TT+IYT
Sbjct: 200 MIAYLGDMVGIKKEKVHPHSFRHFFAISYMERYGNLAELADLLGHTSIETTRIYT 254


>gi|150010322|ref|YP_001305065.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
 gi|149938746|gb|ABR45443.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
          Length = 383

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 15/142 (10%)

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           CGLR+ +  +LT  +++ D S  R++    K  K   +PL     K + +  D    D  
Sbjct: 239 CGLRLGDIQALTWGDVILDGSQYRVKIVMKKTQKTLYLPLSDEALKWMPKRDDAKDTDKI 298

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
            ++    +  +             ++   +  G+  + T HT RH+FAT +L+ G DL +
Sbjct: 299 FHLPYATYINV------------VLKTWAQNSGITKTITFHTARHTFATMMLTLGADLYT 346

Query: 283 IQSILGHFRLSTTQIYTNVNSK 304
              +LGH ++ TT IY  +  K
Sbjct: 347 TSKLLGHTQVKTTTIYAKIVDK 368


>gi|238756569|ref|ZP_04617868.1| Integrase [Yersinia ruckeri ATCC 29473]
 gi|238705195|gb|EEP97613.1| Integrase [Yersinia ruckeri ATCC 29473]
          Length = 156

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 23/143 (16%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           ++ L    G R SEA  L+   +M ++ T   Q K  + R VP+   +       YD   
Sbjct: 15  VVRLCLATGTRWSEAQGLSQSQLMLNRVTF-TQTKSKRNRTVPISKRL-------YD--- 63

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNG 277
                  +LP  RG    P+    +  +   L+R  + LP     H LRH FA+H +  G
Sbjct: 64  -------RLPKRRG----PMFSSCYDAFKNALKRAGIELPKGQRTHVLRHRFASHFMMGG 112

Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300
           G++  +Q ILGH  +  T  Y++
Sbjct: 113 GNILVLQQILGHSSIVMTMRYSH 135


>gi|188492334|ref|ZP_02999604.1| integrase for prophage CP-933T [Escherichia coli 53638]
 gi|188487533|gb|EDU62636.1| integrase for prophage CP-933T [Escherichia coli 53638]
          Length = 341

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 23/144 (15%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           +++ +    G R SEA  LT   ++  + T     K  K R VP+  +++K         
Sbjct: 191 SVVRVCLATGARWSEAEKLTQSQVLPGRITF-TNTKSKKNRTVPISDNIQKL-------- 241

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSN 276
                    LP  RG     L    ++ +   L++  + LP     H LRH+FA+H + N
Sbjct: 242 ---------LPKRRG----RLFSNCYEAFTWALKKAKIELPEGQRTHVLRHTFASHFMMN 288

Query: 277 GGDLRSIQSILGHFRLSTTQIYTN 300
           GG++  +Q ILGH  +  T  Y +
Sbjct: 289 GGNILVLQQILGHSTILMTMRYAH 312


>gi|160887392|ref|ZP_02068395.1| hypothetical protein BACOVA_05411 [Bacteroides ovatus ATCC 8483]
 gi|156107803|gb|EDO09548.1| hypothetical protein BACOVA_05411 [Bacteroides ovatus ATCC 8483]
          Length = 420

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 33/47 (70%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           G+    T H  RHS+A+ LL NG D+ +I+S++GH  + TTQIYT++
Sbjct: 355 GIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHI 401


>gi|257125977|ref|YP_003164091.1| integrase family protein [Leptotrichia buccalis C-1013-b]
 gi|257049916|gb|ACV39100.1| integrase family protein [Leptotrichia buccalis C-1013-b]
          Length = 367

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 69/152 (45%), Gaps = 23/152 (15%)

Query: 159 ILYLLYGCGLRISEALSLTPQNI------MDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           I  +L+  GLRI E L+LT  +I      +D   T+    K D I     L SVRK IL 
Sbjct: 201 IFKILFWTGLRIGEVLALTFDDINLKEKFIDVNKTISHINKKDYITTPKTLGSVRKVIL- 259

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPG--VFQRYIRQLRRYLGLPLSTTA-------H 263
                P +L L+++L  F     + ++    +F     QLR Y+    S  A       H
Sbjct: 260 -----PENLILDLKL-YFSKFEKQKISKSERIFNLKKSQLR-YILEKCSIQAEVEKIRLH 312

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             RHS A++LL    D+ +I   LGH  L TT
Sbjct: 313 DFRHSHASYLLFIQADITAISKRLGHDNLQTT 344


>gi|116662387|ref|YP_829440.1| phage integrase family protein [Arthrobacter sp. FB24]
 gi|116613166|gb|ABK05859.1| phage integrase family protein [Arthrobacter sp. FB24]
          Length = 352

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 37/168 (22%)

Query: 167 GLRISEALSLTPQNIMDDQSTLR---------IQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           GLRI+E + L  ++   D               QG+G K R+VP +    + I  +    
Sbjct: 170 GLRINETVMLDIRDWRPDLGGFGKLHVRFGKGAQGRGPKPRLVPAINGAAELIDWWLGEV 229

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-----------RRYLGLPLS------- 259
                 +   P      G PL P   +R+ R+L           RR LGL +        
Sbjct: 230 RHQYGEDWGDP------GAPLLPS--ERFDRELGRCGRVGGNALRRSLGLQVEQWLPAWS 281

Query: 260 --TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
              T H LRH  A+ L   G D++++Q +LGH  LSTT  Y +V S++
Sbjct: 282 GRMTPHVLRHYCASSLYGAGMDIKALQELLGHQWLSTTSGYIHVRSEH 329


>gi|39653675|ref|NP_945240.1| integrase [Streptococcus phage EJ-1]
 gi|38638843|emb|CAE82083.1| integrase [Streptococcus phage EJ-1]
          Length = 380

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 26/163 (15%)

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQG---------KGDKIRIVPL-------LPSV 206
           L GC  RI EA+ + P N+  + +TL++ G         KG+K     L       + + 
Sbjct: 205 LNGC--RIGEAVGIEPHNVDYESNTLQLHGTYDHTNGYQKGEKTSPKTLASYRETVMTTR 262

Query: 207 RKAILEYYD-LCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST- 260
            K ILE  + +   + N N +      +F    G PL    F   +++    L  P+   
Sbjct: 263 EKEILEEMEFMNELEKNTNPRYKDMGFIFTTKNGVPLQTNSFNLALKKANERLETPIQKN 322

Query: 261 -TAHTLRHSFATHLLSNGGDLRSIQSILGHFRL-STTQIYTNV 301
            T+H  RH+  + L  N   L++I   +GH    +TTQIYT++
Sbjct: 323 LTSHIFRHTLVSRLAENNVPLKAIMDRVGHSDAKTTTQIYTHI 365


>gi|323692935|ref|ZP_08107157.1| integrase [Clostridium symbiosum WAL-14673]
 gi|323503018|gb|EGB18858.1| integrase [Clostridium symbiosum WAL-14673]
          Length = 320

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 14/173 (8%)

Query: 133 QALTLVDNVLLHTSHET-KWIDARNSAILY-----LLYGCGLRISEALSLTPQNIMDDQS 186
           Q    +DNV+    +E  K    R+   LY      +   G R+SE +    ++I     
Sbjct: 137 QHKNYLDNVISEADYEYLKNCLLRDEKYLYYFIIRFMAATGARVSEVIQFEAEDIFTGYK 196

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
              I  KG+K+R + +  +++K  + +      +        +F    G P+ PG  +  
Sbjct: 197 D--IYSKGNKVRRIYVPKALQKDAIAWLKAIRQERGF-----VFLNRYGNPITPGGIRGQ 249

Query: 247 IRQLR-RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           ++ +   Y   P     H+ RH FA   +   GD+  +  +LGH  L TT+IY
Sbjct: 250 LKNMALAYWMNPEVVHPHSFRHRFAKSFIEKCGDISLLSDLLGHKNLETTRIY 302


>gi|315501682|ref|YP_004080569.1| integrase family protein [Micromonospora sp. L5]
 gi|315408301|gb|ADU06418.1| integrase family protein [Micromonospora sp. L5]
          Length = 424

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 230 FRGIRGKPLNPGVFQRYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           FR    +P+ P  F R I ++  +  GLP +T  H LRH+FA   LS GGD+  +   +G
Sbjct: 321 FRLNWAEPVEPAAFYRNILKKAVQAAGLPEATRLHDLRHTFAALWLSAGGDIHRLSEQMG 380

Query: 289 HFRLSTTQIY 298
           H    TTQ +
Sbjct: 381 HASYETTQKF 390


>gi|255034748|ref|YP_003085369.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254947504|gb|ACT92204.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 412

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 16/147 (10%)

Query: 162 LLYGC--GLRISEALSLTPQNIM----DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
            L+ C  GL  S+  SL   +I      DQ     + K +    +PLLP    AI+  Y+
Sbjct: 251 FLFCCYTGLAYSDIQSLERSDIARGIDGDQWIFTHRTKTNVKSHIPLLPEAL-AIIARYN 309

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
             P   +  + LP+       P N  +   Y++++    G+    T+H  RH+FAT + L
Sbjct: 310 DDPACESRGLVLPV-------PSNQKM-NDYLKEIAVVCGIDKILTSHVARHTFATTITL 361

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301
            NG  + S+  +LGH  + TTQIY  +
Sbjct: 362 QNGVPIESVSKMLGHTNIRTTQIYAKI 388


>gi|218263932|ref|ZP_03477873.1| hypothetical protein PRABACTJOHN_03563 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222401|gb|EEC95051.1| hypothetical protein PRABACTJOHN_03563 [Parabacteroides johnsonii
           DSM 18315]
          Length = 370

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 30/151 (19%)

Query: 163 LYGC--GLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           L+ C  GLRIS+ + L  +NI+   D    + I  K  K R   +LP   +A+     LC
Sbjct: 225 LFSCLTGLRISDIIRLQWENIIRGADGGWCMHIVTK--KTRTEAVLPLSDEALA----LC 278

Query: 218 PFDLNLNIQLPLFRGIRG-----KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                         G RG     K L   +   Y++   +  G+    T H  RH++AT 
Sbjct: 279 --------------GERGEGQVFKGLTKTILPLYLKDWIKSAGIRKHITFHGFRHTYATL 324

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            L+ G DL +I  +L H  + TTQ+Y +V S
Sbjct: 325 QLAAGTDLYTISKMLTHSNVGTTQVYVDVVS 355


>gi|212691118|ref|ZP_03299246.1| hypothetical protein BACDOR_00608 [Bacteroides dorei DSM 17855]
 gi|212666350|gb|EEB26922.1| hypothetical protein BACDOR_00608 [Bacteroides dorei DSM 17855]
          Length = 409

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 20/150 (13%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQST---LRIQGKGDKIRI-VPLLPSVRKAILEYYD 215
            L+ C  G+  S+A+++T +N+  D+     L+ + K +++R  V LLP     I +Y+D
Sbjct: 253 FLFACYTGVAYSDAVTITKENLHTDEDGKLWLKYRRKKNELRASVKLLPEAVDLIEKYHD 312

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
                L   I  P  R              +++ L    G+  +   H  RHSFA+ + L
Sbjct: 313 DERNTLFPMIHYPSLRN-------------HMKALAVLAGIKENLCYHVGRHSFASLVTL 359

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             G  + +I  +LGH  + TTQ+Y  V  K
Sbjct: 360 EAGVPIETISKMLGHSNIQTTQVYARVTPK 389


>gi|238854984|ref|ZP_04645313.1| site-specific tyrosine recombinase XerS [Lactobacillus jensenii
           269-3]
 gi|260664470|ref|ZP_05865322.1| site-specific tyrosine recombinase XerS [Lactobacillus jensenii
           SJ-7A-US]
 gi|282933778|ref|ZP_06339131.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1]
 gi|313472133|ref|ZP_07812625.1| site-specific recombinase, phage integrase family [Lactobacillus
           jensenii 1153]
 gi|238832355|gb|EEQ24663.1| site-specific tyrosine recombinase XerS [Lactobacillus jensenii
           269-3]
 gi|239529502|gb|EEQ68503.1| site-specific recombinase, phage integrase family [Lactobacillus
           jensenii 1153]
 gi|260561535|gb|EEX27507.1| site-specific tyrosine recombinase XerS [Lactobacillus jensenii
           SJ-7A-US]
 gi|281302080|gb|EFA94329.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1]
          Length = 351

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 69/154 (44%), Gaps = 6/154 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI+ L+ G G+R+SE  S+   ++   ++TL +  KG +   +P+       I  Y 
Sbjct: 185 RDIAIIALILGTGVRVSECASINLSDLNLKEATLDLTRKGGQKDSIPVASWTLPYIAAYA 244

Query: 215 DL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           D+       + N       +   +   + P   +R + +  +  G PL  T H LRH+ A
Sbjct: 245 DIRNKRYHAEKNDKAFFLTYYHKKTSRITPNGIERLVGKYSKAFGHPL--TPHKLRHTLA 302

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + L     D   +   LG    + T +YT+V+ K
Sbjct: 303 SELYGVTKDQVLVAQQLGQKGTTATDLYTHVDQK 336


>gi|315607168|ref|ZP_07882172.1| integrase [Prevotella buccae ATCC 33574]
 gi|315251222|gb|EFU31207.1| integrase [Prevotella buccae ATCC 33574]
          Length = 448

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 15/158 (9%)

Query: 158 AILYLLYGC--GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVRKAIL 211
           A L  ++ C  GL IS+  +L  ++I    D+Q  +R + +  K+  IVPL P + +AI+
Sbjct: 246 ARLMFVFSCFTGLAISDMENLENKHIQTTADEQMYIRKERQKTKVEFIVPLHP-IAEAII 304

Query: 212 EYYDLCPFDLNLNIQLPLFRG-----IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            +   C  +   + +  L +      +  +  +  V    +  + +  G+    + H  R
Sbjct: 305 SH---CQKEQERSEEYLLVKEKGDHLVFHRDCSRSVMDAKLSIVGKACGICQRLSFHMAR 361

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           H+F T  LS G  + SI  ++GH  +S+TQ+Y  V  K
Sbjct: 362 HTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDK 399


>gi|313158952|gb|EFR58330.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 389

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 17/143 (11%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRI-----QGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           GL  ++ + LT  +I  D +  R      Q  G + R V LLP+       Y D      
Sbjct: 256 GLSHADVVKLTHADIHTDDNGERWIIDKRQKTGTQFR-VKLLPAAEMLYKRYKDTYRTSE 314

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDL 280
            +    PL +G   K LN       +R + R+ GL  + T H  RH+FAT + L+ G  L
Sbjct: 315 KV---FPL-KGTY-KTLNMS-----LRHVARHAGLSFNPTIHMARHTFATTVTLTQGVPL 364

Query: 281 RSIQSILGHFRLSTTQIYTNVNS 303
            ++  +LGH R++TTQIY  + +
Sbjct: 365 ETVCKMLGHKRITTTQIYAKITN 387


>gi|295840975|dbj|BAJ06858.1| integron integrase intI [uncultured bacterium]
          Length = 278

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 107/250 (42%), Gaps = 54/250 (21%)

Query: 64  RQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKK 121
           +++   E+ AF++     K +   +  ++LS I     +L KR +  E + L N+   K+
Sbjct: 44  KEMREKEVGAFLTHLAVDKHVSASTQNQALSAIL----FLYKRVLNIELDWLDNVVRAKR 99

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              LP  L + +   +++N           I   N  +  LLYG G+R+ EAL L  Q+I
Sbjct: 100 PKHLPVVLTKTEVRNVLEN-----------ITGTNQLVAQLLYGTGMRLMEALRLRVQDI 148

Query: 182 MDDQSTLRIQ-GKGDKIRIV--------PLLPSVRKAILEYY-DLC--------PFDLN- 222
             +Q  + ++ GKG+K R+         PL   +  A + Y  DL         PF L+ 
Sbjct: 149 DFEQFQIIVRSGKGNKDRVTTLPEALVEPLKKQIAHARIIYQGDLAEGFGRVYLPFALDR 208

Query: 223 ------LNIQLPLFRGIRGKPLNP--GVFQRY----------IRQLRRYLGLPLSTTAHT 264
                 L            +  NP   +  R+          IR   R++G+    ++HT
Sbjct: 209 KYPNAGLEFGWQYCFPSNNRSTNPRTSLVGRHHLHEKNISGAIRNACRHVGIYKRVSSHT 268

Query: 265 LRHSFATHLL 274
           +RH FATHLL
Sbjct: 269 MRHCFATHLL 278


>gi|253584229|ref|ZP_04861427.1| site-specific recombinase [Fusobacterium varium ATCC 27725]
 gi|251834801|gb|EES63364.1| site-specific recombinase [Fusobacterium varium ATCC 27725]
          Length = 333

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 83/187 (44%), Gaps = 25/187 (13%)

Query: 138 VDNVLLHTSHETKWI----------DARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           +DNVL  +  + K I          D RN  ILY L+  G+R  E ++L  ++I++ + +
Sbjct: 128 IDNVLKLSFEDIKKIIGQYKINGEKDYRNVNILYTLFYTGMRSQELINLKFKHILEREGS 187

Query: 188 LRIQ------GKGDKIRIVPLLPSVRKAILEY----YDLCPFDLNLNIQLPLFRGI-RGK 236
             I+      G+     +  +L    K   EY    Y++   D+ +  Q      + +  
Sbjct: 188 YYIKLEETKSGREQYKSVHNILVQRLKEYKEYLQALYNID--DVMIEEQYVFSSSVEKNT 245

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L+       ++ + + +G  +S   H +RH+ AT L  NG D+  I+  LGH     T+
Sbjct: 246 QLSYRALYDLVQNMGKLIGKDIS--PHNVRHAVATELSINGADILEIRDFLGHADTRVTE 303

Query: 297 IYTNVNS 303
           +Y N  S
Sbjct: 304 VYINAKS 310


>gi|225008848|gb|ACN78946.1| IntIA [Vibrio metschnikovii]
          Length = 87

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 32/46 (69%)

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           QR +++  +   +  S + HTLRHSFATHLL +G D+R++Q  LGH
Sbjct: 41  QRTVKRAVKEAEIKKSVSCHTLRHSFATHLLESGADIRTVQEQLGH 86


>gi|78062255|ref|YP_372163.1| Phage integrase [Burkholderia sp. 383]
 gi|77970140|gb|ABB11519.1| Phage integrase [Burkholderia sp. 383]
          Length = 420

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 76/192 (39%), Gaps = 34/192 (17%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSVR 207
           R   +  LLY  GLRI+EA   T             D+  L + GKG + R+VP    + 
Sbjct: 231 RARWLFTLLYLGGLRITEAADTTMGQFFCRRDADGRDRWWLDVTGKGGRQRLVPATDEMM 290

Query: 208 KAILEY-----YDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL--- 258
             +  Y         P D     + LP+  G   KPL      R ++Q+ ++    L   
Sbjct: 291 AELSRYRRAHGLPALPSDGEPTPLVLPV--GQARKPLTRAALHRIVKQVFQFAADRLRVN 348

Query: 259 ------------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
                         +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +    
Sbjct: 349 GEAGEQQARVLEQASAHWLRHSAGSHMADGHVDLRLVRDNLGHVSLTTTSQYLHADD--- 405

Query: 307 GDWMMEIYDQTH 318
            DW     ++ H
Sbjct: 406 -DWRHRETEEKH 416


>gi|304384215|ref|ZP_07366630.1| integrase [Prevotella marshii DSM 16973]
 gi|325270615|ref|ZP_08137213.1| integrase [Prevotella multiformis DSM 16608]
 gi|325853943|ref|ZP_08171459.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|304334716|gb|EFM00994.1| integrase [Prevotella marshii DSM 16973]
 gi|324987010|gb|EGC18995.1| integrase [Prevotella multiformis DSM 16608]
 gi|325484280|gb|EGC87210.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 417

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 105/264 (39%), Gaps = 35/264 (13%)

Query: 53  YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
           Y  E I +Q        ++  + +K +  K+   +    LS + S LK L KR I     
Sbjct: 153 YHVEDIPVQKADAALVKDLEDYFAKEKGFKLNTSA--GYLSMLASLLKDLHKRHIIDTYP 210

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRI 170
            +N  +++     PR +  ++   +          E K       +    L+ C  GL  
Sbjct: 211 FIN-HSIRWEVGTPRYITREEVSRIA------ALGEDKLQGYEKVSRDMFLFSCLTGLSY 263

Query: 171 SEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           ++   LT Q+I  +     I+    K   +  +PLLP     I  Y  +           
Sbjct: 264 TDVYHLTEQHIFHEAGMTWIRKPRIKTGNVCHIPLLPEAAAIIKRYRGIHT--------- 314

Query: 228 PLFRGIRGKPLN------PGV--FQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGG 278
              R  R +P        PG      +++++ R  G+  + T H  RH+FA+ + LS G 
Sbjct: 315 ---RAFRHEPPKGYLLPIPGCDTVNIHLKKIARLCGIQKTLTYHMARHTFASQMTLSKGV 371

Query: 279 DLRSIQSILGHFRLSTTQIYTNVN 302
            + S+  +LGH ++ TTQ+Y   +
Sbjct: 372 SIESVSKMLGHSQIKTTQVYAETS 395


>gi|304312423|ref|YP_003812021.1| Phage integrase [gamma proteobacterium HdN1]
 gi|301798156|emb|CBL46378.1| Phage integrase [gamma proteobacterium HdN1]
          Length = 434

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 72/163 (44%), Gaps = 21/163 (12%)

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------GKGDKIRIVPL 202
           T+ +    +  + LL   G R SE  ++  +NI  ++  + +       G+    +   L
Sbjct: 246 TRQVTENAADCIRLLALTGARRSEVCAIRWRNIDAERGAIVLAPTEHKTGRKTGAKKTIL 305

Query: 203 LPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKP---LNPGVFQRYIRQLRRYLGLPL 258
           LP+   AI+   +   P D        +FRG +G     LN  ++ R    +RR   LP 
Sbjct: 306 LPAPALAIVAKRERGQPDDY-------VFRGEQGSGHTWLNSKIWVR----IRREANLPD 354

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             T H LRHSFAT L   G +   +   LGH ++STT  Y N 
Sbjct: 355 GITNHALRHSFATMLAVQGAEAAQLMKALGHAQISTTVRYINT 397


>gi|297618854|ref|YP_003706959.1| integrase family protein [Methanococcus voltae A3]
 gi|297377831|gb|ADI35986.1| integrase family protein [Methanococcus voltae A3]
          Length = 295

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 72/141 (51%), Gaps = 7/141 (4%)

Query: 162 LLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
            L   G+RISE ++++  ++ + D+S +   GKG+K R V +   +   I +Y     F 
Sbjct: 136 FLIKTGVRISEFINISLNDMDLSDRSIIIKSGKGNKDRYVFIDDELLLHIKQYLKYREF- 194

Query: 221 LNLNIQLPLFRGIRGKPLNPGV---FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
           LN  I   LF    G  L+ G    ++RY+R + + + L +  T H LRH+F T    + 
Sbjct: 195 LNPKID-RLFLTKSGYKLSEGQISDYRRYLRTISKDI-LNIIVTPHVLRHTFGTLACESN 252

Query: 278 GDLRSIQSILGHFRLSTTQIY 298
            ++  +  I+GH  ++TT  Y
Sbjct: 253 MNIEILSKIMGHANVNTTMTY 273


>gi|23464847|ref|NP_695450.1| integrase/recombinase [Bifidobacterium longum NCC2705]
 gi|23464848|ref|NP_695451.1| integrase/recombinase [Bifidobacterium longum NCC2705]
 gi|23465124|ref|NP_695727.1| integrase/recombinase [Bifidobacterium longum NCC2705]
 gi|46190514|ref|ZP_00206495.1| COG0582: Integrase [Bifidobacterium longum DJO10A]
 gi|189438893|ref|YP_001953974.1| Integrase [Bifidobacterium longum DJO10A]
 gi|189439173|ref|YP_001954254.1| Integrase [Bifidobacterium longum DJO10A]
 gi|189440197|ref|YP_001955278.1| Integrase [Bifidobacterium longum DJO10A]
 gi|189440668|ref|YP_001955749.1| Integrase [Bifidobacterium longum DJO10A]
 gi|227547385|ref|ZP_03977434.1| integrase/recombinase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|317483182|ref|ZP_07942178.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
 gi|23325432|gb|AAN24086.1| probable integrase/recombinase [Bifidobacterium longum NCC2705]
 gi|23325433|gb|AAN24087.1| probable integrase/recombinase [Bifidobacterium longum NCC2705]
 gi|23325741|gb|AAN24363.1| probable integrase/recombinase [Bifidobacterium longum NCC2705]
 gi|189427328|gb|ACD97476.1| Integrase [Bifidobacterium longum DJO10A]
 gi|189427608|gb|ACD97756.1| Integrase [Bifidobacterium longum DJO10A]
 gi|189428632|gb|ACD98780.1| Integrase [Bifidobacterium longum DJO10A]
 gi|189429103|gb|ACD99251.1| Integrase [Bifidobacterium longum DJO10A]
 gi|227212129|gb|EEI80025.1| integrase/recombinase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|291516769|emb|CBK70385.1| Site-specific recombinase XerD [Bifidobacterium longum subsp.
           longum F8]
 gi|316915355|gb|EFV36781.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 351

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 118/301 (39%), Gaps = 31/301 (10%)

Query: 19  QNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++WL + L   RG S  T+++Y      ++ +L      + +           +  ++  
Sbjct: 21  RDWLHHWLPKVRGSSPKTVEAYRIGLESYVRWLETTEGTQRSHIGFGHFDRARLGRWVEW 80

Query: 78  RRTQK-IGDRSLKRSLSGIKSFLKY--LKKRKITTESNILNMRNLKKSNSLP-RALNEKQ 133
            RT++   DR++   ++ ++ FL +  L+   +T   N      +K     P   L E+ 
Sbjct: 81  MRTERGYSDRTIMLRMTTMRVFLDHAGLEHPALTALGNDAAGIRVKPPARKPVDHLGEEH 140

Query: 134 ALTLVDNVLLHTSHETKWI--DA---RNSAILYLLYGCGLRISEALSLTPQNI-MDDQST 187
              L+          T W   DA   RN  +L L+Y    RI E  +LT  ++ MD  + 
Sbjct: 141 TKALL----------TAWGTGDAKSRRNRMLLILMYDTAARIGELAALTIADVGMDKPAR 190

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           + + GK  K R+VPL    R  +  Y +   P     +   PLF   R   + P    R 
Sbjct: 191 VTLTGKRGKSRVVPLGERTRTHLAAYLEEFHPGPSMRDGDRPLFHSTRNGAIQPLSVDRI 250

Query: 247 IRQLRRYLG---------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
              L+             +P     H +R + A  L   G  L  I  +LGH  +STT  
Sbjct: 251 DEILKTAAARARRGTCPSMPERVHCHLIRRTRAMDLYQQGVPLPLIMQLLGHESMSTTSA 310

Query: 298 Y 298
           +
Sbjct: 311 F 311


>gi|260664108|ref|ZP_05864961.1| Lj965 prophage integrase [Lactobacillus jensenii SJ-7A-US]
 gi|260561994|gb|EEX27963.1| Lj965 prophage integrase [Lactobacillus jensenii SJ-7A-US]
          Length = 375

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 79/169 (46%), Gaps = 36/169 (21%)

Query: 162 LLYGCGLRISEALSLTPQNI------MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
           LL   GLR SEAL+LT  +I      +D   TL + G  +K+++ P  P  + +I +   
Sbjct: 205 LLASTGLRKSEALALTWDDIDFINGVIDVNKTLAV-GLDNKVQVQP--PKSKSSIRQ--- 258

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLS-------------- 259
             P   NL   L  ++    K L+  VF  Y     +YL L  P+               
Sbjct: 259 -VPISANLANVLNEYKN-SEKILSAKVFHTYTG---KYLSLSKPMKWLEAIYNKAPKDLK 313

Query: 260 -TTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTT-QIYTNVNSKN 305
             T H  RH+FAT L+S      +++Q +LGH  +  T  IYT++N+KN
Sbjct: 314 HITVHGFRHTFATLLISETDVKPKTVQMLLGHSNIQMTLDIYTHINNKN 362


>gi|189403476|ref|ZP_02795705.2| resolvase [Escherichia coli O157:H7 str. EC4486]
 gi|189360465|gb|EDU78884.1| resolvase [Escherichia coli O157:H7 str. EC4486]
          Length = 259

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 94/222 (42%), Gaps = 48/222 (21%)

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL------------LYGCGLRI 170
            SLP A++   AL L    L+        +    SA+L+             L+  G RI
Sbjct: 14  TSLPVAIDYPAALALRQMALVQDELPKYLLAPEVSALLHYVPDLHRKMLLATLWNTGARI 73

Query: 171 SEALSLT-------PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD--- 220
           +EAL+LT       P       +TL+ Q      R    +P+ ++     + L P     
Sbjct: 74  NEALALTRGDFSLAPPYPFVQLATLK-QRTEKAARTAGRMPAGQQT----HRLVPLSDAW 128

Query: 221 -------LNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG------------LPLS 259
                  +   +++P+ R  +  G+     +++   R +R ++G              + 
Sbjct: 129 FVSQLQTMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTWIGQAVAAAAADGVTFSVP 188

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 189 VTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 230


>gi|331668097|ref|ZP_08368949.1| resolvase (Protein D) [Escherichia coli TA271]
 gi|331064611|gb|EGI36518.1| resolvase (Protein D) [Escherichia coli TA271]
          Length = 120

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 9/63 (14%)

Query: 248 RQLRRYLG---------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           R +R ++G         L +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++Y
Sbjct: 30  RTVRAWIGEAVTADGVTLSVPVTPHTFRHSYAMHMLYVGIPLKVLQSLMGHKSISSTEVY 89

Query: 299 TNV 301
           T V
Sbjct: 90  TKV 92


>gi|189463323|ref|ZP_03012108.1| hypothetical protein BACCOP_04040 [Bacteroides coprocola DSM 17136]
 gi|189429942|gb|EDU98926.1| hypothetical protein BACCOP_04040 [Bacteroides coprocola DSM 17136]
          Length = 420

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 33/47 (70%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           G+    T H  RHS+A+ LL NG D+ +I+S++GH  + TTQIYT++
Sbjct: 355 GIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHI 401


>gi|256841220|ref|ZP_05546727.1| tyrosine recombinase XerC [Parabacteroides sp. D13]
 gi|256737063|gb|EEU50390.1| tyrosine recombinase XerC [Parabacteroides sp. D13]
          Length = 327

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 108/253 (42%), Gaps = 29/253 (11%)

Query: 61  QTIRQLSYTEIRAFISKRR----TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           + IR ++  ++R++++  +      K+   +++R LS   SF  +L+      +S +  +
Sbjct: 86  KNIRHITTDDLRSYLNDYQLTSGATKVTVDNIRRILS---SFFSWLEDEDYIVKSPVRRI 142

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             +K   ++          T  D  L       + I  R+ A++ LL   G+R+ E + L
Sbjct: 143 HKVKVGKTVKE--------TYSDEALEQMRDHCEGI--RDLALIDLLASTGMRVGELVKL 192

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
              +I  +     + GKGDK R V    +  K  L+ Y     D N  + + L       
Sbjct: 193 NRNDIDFENRECIVTGKGDKQRRV-YFDARTKIHLQRYFAERIDDNPALFVSLL-----A 246

Query: 237 PLN----PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           P +     GV  R +R+L R L +P     H  R + AT  +  G  +  +Q +LGH  L
Sbjct: 247 PYDRLQISGVEIR-LRRLGRELNIP-KVHPHKFRRTLATMAIDKGMPIEQVQHLLGHQSL 304

Query: 293 STTQIYTNVNSKN 305
            TT  Y  VN  N
Sbjct: 305 DTTLQYAMVNQTN 317


>gi|253571485|ref|ZP_04848891.1| integrase [Bacteroides sp. 1_1_6]
 gi|251838693|gb|EES66778.1| integrase [Bacteroides sp. 1_1_6]
          Length = 420

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 33/47 (70%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           G+    T H  RHS+A+ LL NG D+ +I+S++GH  + TTQIYT++
Sbjct: 355 GIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHI 401


>gi|146313149|ref|YP_001178223.1| phage integrase family protein [Enterobacter sp. 638]
 gi|145320025|gb|ABP62172.1| phage integrase family protein [Enterobacter sp. 638]
          Length = 336

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 66/308 (21%), Positives = 113/308 (36%), Gaps = 42/308 (13%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECD--------TRQFLIFLAFYTEEKIT 59
           E ++FE    +  W +  E  R L +L    Y            RQ  +  AF    +  
Sbjct: 34  EALAFEQYTVQNPWQEEKEDRRTLKELVDSWYSAHGITLKDGLKRQLAMHHAFECMGEPL 93

Query: 60  IQTIRQLSYTEIRA------FISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESN 112
            +      ++  R       +    R +++  R+L   L+  ++    L +  +   E+ 
Sbjct: 94  ARDFDAQMFSRYREKRLKGEYARSNRVKEVSPRTLNLELAYFRAVFNELNRLGEWKGENP 153

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           + NMR  +        L   Q   L+     H   + +        ++ +    G R SE
Sbjct: 154 LKNMRPFRTEEMEMAWLTHDQISQLLGECKRHDHPDLE-------TVVRICLATGARWSE 206

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
           A SL    +   + T     KG K R VP+         E Y+  P D    +    +  
Sbjct: 207 AESLRKSQLAKYKITY-TNTKGRKNRTVPISK-------ELYESLPDDKKGRLFSDCY-- 256

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                   G F+  +   R  + LP     H LRH+FA+H + NGG++  +Q +LGH  +
Sbjct: 257 --------GAFRSALE--RTGIELPAGQLTHVLRHTFASHFMMNGGNILVLQRVLGHTDI 306

Query: 293 STTQIYTN 300
             T  Y +
Sbjct: 307 KMTMRYAH 314


>gi|113460700|ref|YP_718766.1| phage integrase [Haemophilus somnus 129PT]
 gi|112822743|gb|ABI24832.1| phage integrase [Haemophilus somnus 129PT]
          Length = 308

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 83/178 (46%), Gaps = 19/178 (10%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + LN+ +  TL+    L+ + E  W        + L+   G+R SEAL+LTP++      
Sbjct: 116 KYLNQFELHTLITQ--LNLTKEINW-----DWFILLIAKTGMRFSEALALTPKDFDFAHQ 168

Query: 187 TLRIQG-----KGDKIRIVPLLPSVRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPL 238
           TL I        G   +      SVRK  L++  +  F     N   + P+F  +R K  
Sbjct: 169 TLTINKTWNYKDGGGFQPTKNRSSVRKIPLDWQTIIQFAELIKNKPEEQPIF--VRKKIF 226

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           N  V    IR+ ++   +P+  + H LRH+ A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 227 NSTVNNILIRRCKK-ANIPI-ISLHGLRHTHASLLLFAGVSIASVARRLGHSNMTTTQ 282


>gi|87308618|ref|ZP_01090758.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Blastopirellula marina DSM 3645]
 gi|87288710|gb|EAQ80604.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Blastopirellula marina DSM 3645]
          Length = 67

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/41 (56%), Positives = 28/41 (68%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           TAHT RHSFATHL+    D+R++Q +L H    TT IYT V
Sbjct: 12  TAHTFRHSFATHLIEVAYDIRTVQELLVHRDFRTTMIYTPV 52


>gi|322831291|ref|YP_004211318.1| integrase family protein [Rahnella sp. Y9602]
 gi|321166492|gb|ADW72191.1| integrase family protein [Rahnella sp. Y9602]
          Length = 332

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 63/150 (42%), Gaps = 34/150 (22%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL-------LPSVRKAI 210
           +I+ L    G R SEA  L    +   + T   + KG K R +P+       LP V+K  
Sbjct: 192 SIVKLCLSTGARWSEAEELNKNQVTKYKITY-TKTKGRKNRTIPISEELYESLPEVKKGR 250

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           L  +  C                       G F RY  + R  + LP     H LRH+FA
Sbjct: 251 L--FKKCY----------------------GAF-RYALE-RTDIELPAGQLTHVLRHTFA 284

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +H + NGG++  +Q +LGH  +  T  Y +
Sbjct: 285 SHFMMNGGNILVLQRVLGHTDIKMTMRYAH 314


>gi|326789890|ref|YP_004307711.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326540654|gb|ADZ82513.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 350

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 22/158 (13%)

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI----RIVPLL 203
           E KWID+    IL++LY  G R+SE L L  +NI  D   L + G G K     R +P+ 
Sbjct: 195 ENKWIDS----ILFMLY-TGFRVSEMLELKIENI--DLENLTMSG-GKKTAAGKRTIPIH 246

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ-RYIRQLRRYLGLPLSTTA 262
             +   +   YD        N +  LFR  +G  +    ++  +   +   L L   +  
Sbjct: 247 SKIVDIVKNRYDE-------NYEY-LFRTQKGTKMTADSYRVSFYNPIMEQLNLT-GSGC 297

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           H LRH+F + + S   +  +++ I+GH     T IYT+
Sbjct: 298 HDLRHTFCSKMDSYNINATTLKRIMGHSTKDVTDIYTH 335


>gi|189345769|ref|YP_001942298.1| integrase [Chlorobium limicola DSM 245]
 gi|189339916|gb|ACD89319.1| integrase domain protein SAM domain protein [Chlorobium limicola
           DSM 245]
          Length = 223

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 92/212 (43%), Gaps = 21/212 (9%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           PE  + + +     W  N+  E+     T ++Y  D ++   FL     E++ I T    
Sbjct: 16  PEFHALKAMPLELEWYANIRSEK-----TRRAYRNDVKELSRFLGITEPEEMRIVT---- 66

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--- 123
               + A+ +    + +   +++R L+ I S   YL ++     + +L ++    +N   
Sbjct: 67  -RAHLLAWRTDLEQRNLAAATIRRKLASISSLFDYLCEQNAVLHNPVLGVKRPAANNNEG 125

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           + P AL + QA  L+D    +T         R+ AIL  L   GLR  E   L  +++  
Sbjct: 126 TTP-ALGDSQARMLLDAPPANT-----LKGKRDRAILATLLYHGLRREELCRLQVKDLQQ 179

Query: 184 DQST--LRIQGKGDKIRIVPLLPSVRKAILEY 213
                 L I GK +KIR +P+ P  ++ I EY
Sbjct: 180 RSGVQHLCIHGKREKIRFLPMHPMAQRLIDEY 211


>gi|150004634|ref|YP_001299378.1| transposase [Bacteroides vulgatus ATCC 8482]
 gi|149933058|gb|ABR39756.1| transposase [Bacteroides vulgatus ATCC 8482]
          Length = 407

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 13/145 (8%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKG-DKIRIVPLLP--SVRKAILEYYDL 216
            ++ C  GL  S+   L  ++I++D +  +   KG  K +I+  +P   V   IL  Y  
Sbjct: 251 FVFCCFTGLAFSDIHDLKKEHIVEDSNGAKWIRKGRQKTKIMCNIPLMEVPLKILGKYST 310

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
             +  +  +  P+   +  + +N      Y+++L    G+  + T H  RH+FAT  L+N
Sbjct: 311 NEYCKSRGVLFPV---LCNQKMNA-----YLKELADICGIKKTLTTHVARHTFATFALAN 362

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNV 301
           G  + S+  +LGH  +  T+ Y  V
Sbjct: 363 GVSIESVAKMLGHTNVQMTRHYARV 387


>gi|253563451|ref|ZP_04840908.1| integrase [Bacteroides sp. 3_2_5]
 gi|251947227|gb|EES87509.1| integrase [Bacteroides sp. 3_2_5]
          Length = 420

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 33/47 (70%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           G+    T H  RHS+A+ LL NG D+ +I+S++GH  + TTQIYT++
Sbjct: 355 GIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHI 401


>gi|253570202|ref|ZP_04847611.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840583|gb|EES68665.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 409

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 20/150 (13%)

Query: 162 LLYGC--GLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRI-VPLLPSVRKAILEYYD 215
            L+ C  G+  S+A+++T +N+    D +  L+ + K +++R  V LLP     I +Y+D
Sbjct: 253 FLFACYTGVAYSDAVTVTRENLYTGEDGKLWLKYRRKKNELRASVKLLPEAVALIEKYHD 312

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
                L   I  P  R              +++ L    G+  +   H  RHSFA+ + L
Sbjct: 313 DSRDTLFPMIHYPSMRN-------------HMKALAVLAGIKENLCYHVGRHSFASLVTL 359

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             G  + +I S+LGH  + TTQ+Y  V  K
Sbjct: 360 EAGVPIETISSMLGHSNIQTTQVYARVTPK 389


>gi|332877049|ref|ZP_08444800.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332684939|gb|EGJ57785.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 308

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 25/156 (16%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG--------KGDK--IRIVPLLPSVRKA 209
           +Y+    GLRI E  +L   +I  +  T+ +Q         +GDK    +V   P  + +
Sbjct: 133 IYISLSTGLRIGEVCALRWSDIDIEAGTISVQRTIERIYVIEGDKKHTELVINTPKTKNS 192

Query: 210 ILEYYDLCPFDLNL-NIQLPLFRGIRG---------KPLNPGVFQRYIRQLRRYLGLPLS 259
             E     P    L ++  PL + +            P  P  ++ Y ++L   LG+P  
Sbjct: 193 CRE----IPMSKELISMVKPLKKIVNSDYYVLTNEPSPTEPRTYRNYYKRLMEQLGIP-K 247

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
              H LRHSFAT  + +  D +++  +LGH  +STT
Sbjct: 248 LKYHGLRHSFATRCIESNCDYKTVSVLLGHSNISTT 283


>gi|295106975|emb|CBL04518.1| Site-specific recombinase XerD [Gordonibacter pamelaeae 7-10-1-b]
          Length = 395

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 6/111 (5%)

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLN-----IQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           IR V L       + ++Y+    DL  +        PLF    G P  P +       + 
Sbjct: 258 IRRVSLDAETNDRLADWYERSRADLRADGFRRTASTPLFAREDGSPYLPSMVYAGFSAMA 317

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           R +GL  +   HTLRH+ AT+LL  G  +R +Q  LGH  ++ T QIY +V
Sbjct: 318 REVGLDPAAHFHTLRHTHATYLLDQGVSIRVLQERLGHSSVNVTLQIYGHV 368


>gi|291288940|ref|YP_003517443.1| resolvase [Klebsiella pneumoniae]
 gi|290792072|gb|ADD63398.1| resolvase [Klebsiella pneumoniae]
          Length = 264

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|282877198|ref|ZP_06286036.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281300690|gb|EFA93021.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 410

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 14/140 (10%)

Query: 167 GLRISEALSLTPQNIMDDQS----TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           GL   +   L+ ++I+ D +      + + K   +  +PLL  +   ILE Y   P    
Sbjct: 260 GLAFIDVQQLSAEHIVQDNNGNYWIRKPRQKTKNMCNIPLL-DIPMQILEKYKSHPTCQK 318

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLR 281
            N+ LP+       P N  +   Y++++    G+    T HT RHS+AT + L+NG  + 
Sbjct: 319 KNVLLPV-------PCNQKM-NSYLKEIADLCGISKCLTTHTARHSYATSVCLANGVSIE 370

Query: 282 SIQSILGHFRLSTTQIYTNV 301
           ++  +LGH  +  TQ Y  V
Sbjct: 371 NVAKMLGHSNIKMTQHYARV 390


>gi|266619902|ref|ZP_06112837.1| putative integrase [Clostridium hathewayi DSM 13479]
 gi|323693669|ref|ZP_08107868.1| hypothetical protein HMPREF9475_02731 [Clostridium symbiosum
           WAL-14673]
 gi|288868532|gb|EFD00831.1| putative integrase [Clostridium hathewayi DSM 13479]
 gi|323502283|gb|EGB18146.1| hypothetical protein HMPREF9475_02731 [Clostridium symbiosum
           WAL-14673]
          Length = 278

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 125/298 (41%), Gaps = 43/298 (14%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E+L+E + +L     E   S  T+Q Y    R+ + FL+F   E+ T   +  L Y E  
Sbjct: 7   EILREYRIYL----TEHEKSHATIQKY---VRELVWFLSFLQGEEPTKAKV--LEYRE-- 55

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL----PRA 128
                +  Q    R++   LS I S+L YL             +R LK  +++     R 
Sbjct: 56  -----QLQQSHHARTVNAKLSAIHSYLDYLG-------LAACKVRFLKIQHTVFVDDSRD 103

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L E +   L+D          +  D+R   ++  +   G+R+SE   LT + +   ++ +
Sbjct: 104 LTEAEYHRLLDAA-------KRKKDSRLYHVMLAICTTGIRVSELSFLTVEALHKGKAEI 156

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R++GK   IR + L   + + +  Y               LF    GKPL+       ++
Sbjct: 157 RMKGK---IRTILLTKELCRKLNAYAKEKGIRTGY-----LFCTRTGKPLDRSNICHDMK 208

Query: 249 QLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +L R   + P     H LRH FA    +   +L  +  ILGH  + TT+IY  + ++ 
Sbjct: 209 KLCRAARVNPEKVFPHNLRHLFAKCYYAIKKNLAYLADILGHASVDTTRIYVAMGTRE 266


>gi|55709836|gb|AAV58821.1| integrase [Clostridium sp. CCRI-9842]
          Length = 397

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 28/168 (16%)

Query: 157 SAILYLLYGCGLRISEALSLTPQN-------IMDDQSTLRIQGKG---------DKIRIV 200
            AI+ LL G GLRISE   LT ++       I+     LR  G G           +R +
Sbjct: 214 DAIVILL-GTGLRISELCGLTDKDLDFENRVIIVSHQLLRNTGVGYYIDEPKTQSGVRKI 272

Query: 201 PLLPSVRKA----ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP----GVFQRYIRQLRR 252
           P+   V +A    I       PF ++      LF    G P+      G+F R +++  +
Sbjct: 273 PMNEEVYQAFQRVIKNRKGAKPFIIDGYANF-LFLKQNGYPMTAVDYGGMFGRLVKKYNK 331

Query: 253 YL--GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                LP +TT H +RH+F T L + G + +++Q I+GH  ++ T  Y
Sbjct: 332 SHEEALPKTTTPHAMRHTFCTRLANAGMNPKALQYIMGHSNITMTLNY 379


>gi|189439994|ref|YP_001955075.1| Integrase [Bifidobacterium longum DJO10A]
 gi|189428429|gb|ACD98577.1| Integrase [Bifidobacterium longum DJO10A]
          Length = 223

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 67/148 (45%), Gaps = 31/148 (20%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           +L L   CGLR  E   +  +++M D    +L + GKGDK RIVP+              
Sbjct: 80  MLRLGAECGLRRFEIAKVHSRDVMRDLVGWSLVVVGKGDKQRIVPIGD------------ 127

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST------TAHTLRHSFA 270
              DL L     L R   G  L PG +  ++     Y+G  LS       TAH+LRH +A
Sbjct: 128 ---DLAL-----LIRSANGY-LFPGRWSGHVES--SYVGRHLSDLLGDGWTAHSLRHRYA 176

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIY 298
           T   +   DL  +  +LGH  + TTQ Y
Sbjct: 177 TTTYAATRDLLLVSKLLGHASVETTQRY 204


>gi|163791648|ref|ZP_02186044.1| integrase/recombinase, fragment (putative) [Carnobacterium sp. AT7]
 gi|159873070|gb|EDP67178.1| integrase/recombinase, fragment (putative) [Carnobacterium sp. AT7]
          Length = 183

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 11/152 (7%)

Query: 153 DARNSAILYLL-YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           +A     L+L+    GLR+S+ + L  Q+++  ++   ++ K  K RI+  L S++  IL
Sbjct: 26  NADRDVFLFLIGINSGLRMSDIVKLKKQDLISSKNPRIVEKKTGKTRIL-YLSSLQDLIL 84

Query: 212 EYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           EY  DL P D        LF   +G  +      +  +++ + LG       HTLR +F 
Sbjct: 85  EYTKDLAPEDY-------LFPSTKGGHVEVNTVYQMFQKVAKLLGRD-DIGTHTLRKTFG 136

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            H      D+ ++  I GH     T+ Y  +N
Sbjct: 137 YHYYKKTKDVATLMEIFGHSSEKITKRYIGIN 168


>gi|322688558|ref|YP_004208292.1| phage integrase [Bifidobacterium longum subsp. infantis 157F]
 gi|320459894|dbj|BAJ70514.1| putative phage integrase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 587

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 118/301 (39%), Gaps = 31/301 (10%)

Query: 19  QNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++WL + L   RG S  T+++Y      ++ +L      + +           +  ++  
Sbjct: 257 RDWLHHWLPKVRGSSPKTVEAYRIGLESYVRWLETTEGTQRSHIGFGHFDRARLGRWVEW 316

Query: 78  RRTQK-IGDRSLKRSLSGIKSFLKY--LKKRKITTESNILNMRNLKKSNSLP-RALNEKQ 133
            RT++   DR++   ++ ++ FL +  L+   +T   N      +K     P   L E+ 
Sbjct: 317 MRTERGYSDRTIMLRMTTMRVFLDHAGLEHPALTALGNDAAGIRVKPPARKPVDHLGEEH 376

Query: 134 ALTLVDNVLLHTSHETKWI--DA---RNSAILYLLYGCGLRISEALSLTPQNI-MDDQST 187
              L+          T W   DA   RN  +L L+Y    RI E  +LT  ++ MD  + 
Sbjct: 377 TKALL----------TAWGTGDAKSRRNRMLLILMYDTAARIGELAALTIADVGMDKPAR 426

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           + + GK  K R+VPL    R  +  Y +   P     +   PLF   R   + P    R 
Sbjct: 427 VTLTGKRGKSRVVPLGERTRTHLAAYLEEFHPGPSMRDGDRPLFHSTRNGAIQPLSVDRI 486

Query: 247 IRQLRRYLG---------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
              L+             +P     H +R + A  L   G  L  I  +LGH  +STT  
Sbjct: 487 DEILKTAAARARRGTCPSMPERVHCHLIRRTRAMDLYQQGVPLPLIMQLLGHESMSTTSA 546

Query: 298 Y 298
           +
Sbjct: 547 F 547


>gi|255016170|ref|ZP_05288296.1| integrase [Bacteroides sp. 2_1_7]
          Length = 420

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 33/47 (70%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           G+    T H  RHS+A+ LL NG D+ +I+S++GH  + TTQIYT++
Sbjct: 355 GIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHI 401


>gi|225350722|ref|YP_002720709.1| integrase [Brachyspira hyodysenteriae WA1]
 gi|225216406|gb|ACN85139.1| integrase [Brachyspira hyodysenteriae WA1]
          Length = 274

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 26/152 (17%)

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQST---LRIQGKGDKIRIVPLL 203
           K  + +N  I+  LY  GLR+SE +++  ++    ++D  T   + + GKG+K R + L 
Sbjct: 114 KLSNEKNKLIIQTLYATGLRVSELINIKKKDCKKTIEDNITYMSVSVIGKGNKERKIKLK 173

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-YIRQLRRYLGLPLSTT- 261
             +   I+  +         N ++ LF     +  N   F R YI ++    GL    T 
Sbjct: 174 IELYNKIINTF---------NSKIYLF-----ETKNKRAFTRQYIYKIVNTAGLKALGTR 219

Query: 262 ---AHTLRHSFATHLL-SNGGDLRSIQSILGH 289
               HTLRHSFAT LL  +   L+++   LGH
Sbjct: 220 QVHPHTLRHSFATELLIKDNKSLKAVSKYLGH 251


>gi|193063096|ref|ZP_03044188.1| resolvase [Escherichia coli E22]
 gi|192931355|gb|EDV83957.1| resolvase [Escherichia coli E22]
          Length = 243

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 172 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 215


>gi|167751366|ref|ZP_02423493.1| hypothetical protein EUBSIR_02352 [Eubacterium siraeum DSM 15702]
 gi|167655612|gb|EDR99741.1| hypothetical protein EUBSIR_02352 [Eubacterium siraeum DSM 15702]
          Length = 476

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 83/192 (43%), Gaps = 26/192 (13%)

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P+   E Q LT   N +L   H+ K  +     +  L  G G+R  E L+L   ++    
Sbjct: 183 PKKAREMQVLT--QNEILRFLHQAK--EEGYYELFLLELGTGMRRGEILALKWSDLNFAT 238

Query: 186 STLRIQGK---------------GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
             LRI+ +                  IR V L PS+ K ++ Y +    D       P  
Sbjct: 239 GELRIERQVYIIKAEVIISAPKTKASIRTVILPPSLLKTLVAYKET--VDSEWMFPSPTD 296

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
            G   +P NP   ++ ++ +    G       H LRH+FAT  L NG D++++ +++GH 
Sbjct: 297 NG---RPRNPSSVRKRLQLILERAGCK-KVRFHDLRHTFATMALENGMDIKTLSAMIGHV 352

Query: 291 RLSTT-QIYTNV 301
              TT  IY+++
Sbjct: 353 SAETTLNIYSHI 364


>gi|160889618|ref|ZP_02070621.1| hypothetical protein BACUNI_02044 [Bacteroides uniformis ATCC 8492]
 gi|156860610|gb|EDO54041.1| hypothetical protein BACUNI_02044 [Bacteroides uniformis ATCC 8492]
          Length = 379

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 123/294 (41%), Gaps = 28/294 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEIRAFIS 76
            N L N+++   +  +  QS     R+  I       E+ T   I  R++  T +  FI 
Sbjct: 83  HNRLSNMKLTGYMKLIAEQSVNNRVRKSAIHAVVCHLERYTPNGILLRKVDKTYLLGFID 142

Query: 77  KRRTQKIGDRSLKRSLSGIKSF-----LKYLKKRKITTESNILN-MRNLKKSNSLPRALN 130
             +  K      +++L     F     L+Y   R ++ +   +N M  +K  +   R   
Sbjct: 143 YLKKTKQEHCKKEKTLHVNTQFYYLKTLRYCLNRAVSEDYITVNPMNKIKNEDKPKRNRT 202

Query: 131 EKQALTLVD-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           E+  LT+ +   L+HT      +     A L+  + CGLR  + ++L  ++I  D++   
Sbjct: 203 ERDYLTIKELTRLVHTPFYNTLL---RKAFLFSCF-CGLRHCDIIALRWEDIRYDENGNA 258

Query: 190 ----IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
               IQ K  +   +PL     K +       P   N      +F G+     +  +  +
Sbjct: 259 LLSIIQKKTKEAISLPLCSEAIKHL-------PDRGNAPETEKVFAGLVSLGRSNVILHK 311

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           ++ Q     G+    T HT RH+ AT +L+ G DL ++  +LGH  + TTQIY 
Sbjct: 312 WVEQA----GISKHVTFHTARHTHATMMLTLGVDLYTVSKLLGHTNIQTTQIYA 361


>gi|217388371|ref|YP_002333400.1| intergrase [Enterococcus faecalis]
 gi|260559874|ref|ZP_05832053.1| integrase [Enterococcus faecium C68]
 gi|8100684|gb|AAF72368.1|AF192329_29 integrase [Enterococcus faecalis]
 gi|3243185|gb|AAC34799.1| integrase [Enterococcus faecium]
 gi|80973251|gb|ABB53357.1| Int [Eggerthella lenta]
 gi|80973262|gb|ABB53367.1| Int [Clostridium sp. MLG245]
 gi|80973273|gb|ABB53377.1| Int [Enterococcus faecium]
 gi|216409913|dbj|BAH02348.1| int [Enterococcus faecalis]
 gi|260074098|gb|EEW62421.1| integrase [Enterococcus faecium C68]
          Length = 397

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 28/168 (16%)

Query: 157 SAILYLLYGCGLRISEALSLTPQN-------IMDDQSTLRIQGKG---------DKIRIV 200
            AI+ LL G GLRISE   LT ++       I+     LR  G G           +R +
Sbjct: 214 DAIVILL-GTGLRISELCGLTDKDLDFENRVIIVSHQLLRNTGVGYYIDEPKTQSGVRKI 272

Query: 201 PLLPSVRKA----ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP----GVFQRYIRQLRR 252
           P+   V +A    I       PF ++      LF    G P+      G+F R +++  +
Sbjct: 273 PMNEEVYQAFQRVIKNRKGAKPFIIDGYANF-LFLKQNGYPMTAVDYGGMFGRLVKKYNK 331

Query: 253 YL--GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                LP +TT H +RH+F T L + G + +++Q I+GH  ++ T  Y
Sbjct: 332 SHEEALPKTTTPHAMRHTFCTRLANAGMNPKALQYIMGHSNITMTLNY 379


>gi|83815635|ref|YP_444738.1| Phage integrase family protein [Salinibacter ruber DSM 13855]
 gi|83757029|gb|ABC45142.1| Phage integrase family protein [Salinibacter ruber DSM 13855]
          Length = 467

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 58/281 (20%), Positives = 113/281 (40%), Gaps = 27/281 (9%)

Query: 35  TLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
           T +SY    R+F  F+   Y  +++    +    + E R +  + R       ++ R L 
Sbjct: 183 TFRSYRTTCRKFTAFIEETYGRDEVPFGALEAELFREFRTYCYEERGNSTN--TVGRELG 240

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            +++ +++  K    +     ++  +    S    L  ++   + D   L    E+   +
Sbjct: 241 IMRTLVRHAMKEGKLSAYPFEHI-TIDSEPSQKELLTPEEVERIAD---LEIDEESPAAE 296

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-----TLRIQGKGDKIRIVPLLPSVRK 208
           AR    L+  Y  G+R S+  +L  Q+I + +S       +++   D +  VPL+P  ++
Sbjct: 297 ARR-WFLFAYYAGGMRFSDVATLQWQHIREGRSGRPRVCYKMKKTADTVG-VPLIPEAKE 354

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGI---------RGKPLNPGVFQRYIRQLRRYLGLPLS 259
            +  Y +    D       P+  GI         R K        R++++L    G+   
Sbjct: 355 ILCRYEEGDGEDW----VFPISEGIDPGNEEALHRRKCQRNSAANRHLKELAGQAGIEKR 410

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            T H  R++ A  L  N GD+  +   LGH  +  TQ Y +
Sbjct: 411 VTFHLSRNAAAWKLYQNVGDIYKVSKFLGHSNVEQTQDYID 451


>gi|325851900|ref|ZP_08171033.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325484677|gb|EGC87591.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 417

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 82/185 (44%), Gaps = 30/185 (16%)

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTL 188
           E+ ALT  D   L +    + +D  N   L  L GC  GL  S+   L     +DD  TL
Sbjct: 219 ERNALTSDDLHKLLSYRPHRSVD--NHCRLIFLLGCFTGLAFSDLKKLR----LDDVYTL 272

Query: 189 R--------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                     + K     IVPLLP   + +    D     L       LFR     P N 
Sbjct: 273 DDGRRYISLCRTKTQNRSIVPLLPIAEEILTIVSDGRKEGL-------LFREF---PTNS 322

Query: 241 GVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQI 297
             F R IR +    GLP  T  T+HT RH+FAT + L NG  + ++  +LGH  +STT++
Sbjct: 323 H-FNRKIRDIIIKAGLPPHTEATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEL 381

Query: 298 YTNVN 302
           Y  V+
Sbjct: 382 YAKVS 386


>gi|290476509|ref|YP_003469414.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii
           SS-2004]
 gi|289175847|emb|CBJ82650.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii
           SS-2004]
          Length = 207

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 67/157 (42%), Gaps = 2/157 (1%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEY 213
           RN  ++++ +  G R+SE L L   +   +   LR+Q  K     I P++    + I ++
Sbjct: 31  RNICMIFMGFIHGFRVSELLGLKLSDADLEGKKLRVQRLKNGFSTIHPMVMREVQLIRQW 90

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                   N      LF    G P++   F + IRQ      L +    H LRHS    L
Sbjct: 91  LAQRQKYKNSEQNDWLFLSRTGVPMSRQQFYKIIRQTSLQANLAVCANPHMLRHSCGYAL 150

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNS-KNGGDW 309
             NG D R IQ  LGH  +  T  YT  N+ + G  W
Sbjct: 151 ADNGVDTRLIQDYLGHRNIRHTVRYTASNAGRFGAIW 187


>gi|120553132|ref|YP_957483.1| phage integrase family protein [Marinobacter aquaeolei VT8]
 gi|120322981|gb|ABM17296.1| phage integrase family protein [Marinobacter aquaeolei VT8]
          Length = 372

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 22/185 (11%)

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           LNE +AL  V  +   +      +  RN  +  ++   GLR+SE      +++ + +S  
Sbjct: 161 LNEDEALKFVSALGKISGRNNAHVRHRNILVGQMMLQTGLRVSEVCDFPLRDLPEVESNF 220

Query: 189 RIQ------GKGDKIRIVPLLPSVRKAILEYYDLCPFD----------LNLNIQLP-LFR 231
            +       GKG K R++ L+P+  + +L  ++    D          +   I  P LF 
Sbjct: 221 LLTPARCAFGKGAKSRMI-LIPN--ELLLRLWEYVDIDRERITERFSGIAEEIVSPKLFV 277

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
             +G PL+    ++  R+  +Y G+  +   HTLRH+F T+      DL ++  +LGH  
Sbjct: 278 SEKGTPLSVNWVEKLFRKASKYTGI--NAHPHTLRHTFGTYHYLYNRDLITLSKLLGHSD 335

Query: 292 LSTTQ 296
             TT+
Sbjct: 336 SETTK 340


>gi|328882938|emb|CCA56177.1| Integrase [Streptomyces venezuelae ATCC 10712]
          Length = 428

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 125/311 (40%), Gaps = 36/311 (11%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI--GDRSLKRSLS- 93
           + Y  D  + L    F T  +  ++++   S   IR ++      K+  G   L R +S 
Sbjct: 105 EQYRKDCLRELEMYIFPTFGECDVRSVGHFSSDTIRGWVRVLEQTKVRKGRGPLNRMMSP 164

Query: 94  ----GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
                +   L  +    +  E   L  RN  +  +LPR  +        D   L T  E 
Sbjct: 165 KTIRNLHGLLSSILNEAVRAEPP-LRARNPCERTNLPRRDDGGTGPEDEDIEFL-TPQEV 222

Query: 150 KWIDAR-----NSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQ--------GKGD 195
             I  R     +  ++ + YG GLR SE  +L P  ++D D + +R+Q        G+G 
Sbjct: 223 AAIRERLTIRQDQLMVEVKYGTGLRYSELTALAPYCLLDSDPARVRLQVHRAWKKDGEGG 282

Query: 196 KIRIVPLLPSVR------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----QR 245
               +P     R      K+++E  +       L+     F G +G+ L+   F    QR
Sbjct: 283 YYVGMPKSKRSRRTIRVSKSVIEALNELRRTEELDDDSLFFTGDQGQRLHYSTFYDRWQR 342

Query: 246 YIRQLRRYLGLPL--STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN 302
            IR+ +    LP+    T H LRHS A  L+S G     +Q  LGH  + TT  +Y ++ 
Sbjct: 343 AIRKAKEDGVLPIYKHPTPHDLRHSHAAALISAGHSPTYVQRRLGHESIKTTSDLYGHLL 402

Query: 303 SKNGGDWMMEI 313
            +   D M  I
Sbjct: 403 PETDDDAMETI 413


>gi|332796945|ref|YP_004458445.1| XerC/D integrase-recombinase protein [Acidianus hospitalis W1]
 gi|332694680|gb|AEE94147.1| XerC/D integrase-recombinase protein [Acidianus hospitalis W1]
          Length = 286

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 113/273 (41%), Gaps = 65/273 (23%)

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK--RKITTES------NILNMRNLKKSNS 124
           AFI   +  + G+ ++K   + +K FL+++KK  + +T+E       ++++     K   
Sbjct: 17  AFIIALKAAEAGEGTVKLYSTAVKDFLEFIKKDPKSVTSEDVNRWIIHLMSKEGKIKGTE 76

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDA------------------------------ 154
           + RA    +++TL  N ++      KWI                                
Sbjct: 77  MKRA----RSVTL-RNYVIAVRRFLKWIGVNVNPVIPRARRKEIRALNEDEINRLFEATR 131

Query: 155 --RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAIL 211
             R+  IL L    GLR  E LSL  ++I      +R+ + K  + RIV       K + 
Sbjct: 132 RLRDKLILRLFLDTGLRSKELLSLRVEDIDLKNRMIRVKETKNGEERIVFFTEETEKLLR 191

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ---RYIRQLRRYLGLPLSTTAHTLRHS 268
           +Y               L +    + L P  +Q   + I++L    G+      H LRH+
Sbjct: 192 KY---------------LTKQGSSERLFPMTYQALYKLIKRLGERAGIK-GLRPHILRHT 235

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           FAT  +  G  L ++Q +LGH  + TTQIYT++
Sbjct: 236 FATIAIRRGLPLPAVQRLLGHKDIKTTQIYTHL 268


>gi|262067785|ref|ZP_06027397.1| site-specific recombinase, phage integrase family [Fusobacterium
           periodonticum ATCC 33693]
 gi|291378508|gb|EFE86026.1| site-specific recombinase, phage integrase family [Fusobacterium
           periodonticum ATCC 33693]
          Length = 360

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 25/202 (12%)

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
           K++ KYLK +  T E         KK++   R + +++   L DN+  + +++   ID  
Sbjct: 162 KNYAKYLKTK--TVEKG-------KKTSDRERVITQEELQVLWDNISNNETNKHGIIDM- 211

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK--IRIVPLLPSVRKAILEY 213
              +L L Y  GLRISE L +  +++  ++    ++    K  +R VP+       IL+ 
Sbjct: 212 ---VLILCY-TGLRISELLRVKRKDVYLNEYYFEVEKSKSKAGVRKVPIADK----ILDL 263

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
           +    F  +      L++ + G   +   F  + R L R LGL   +  H  RH+FA+ L
Sbjct: 264 FRARYFSKDK----YLWQRLDGLEYDYDSFDNHFRILFRDLGLSYHS-LHDTRHTFASLL 318

Query: 274 LSNGGDLRSIQSILGHFRLSTT 295
             N  D  +I  I+GH    TT
Sbjct: 319 SDNVADKDAIIKIIGHSNYKTT 340


>gi|38637764|ref|NP_942738.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527102|gb|AAP85852.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 386

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 75/175 (42%), Gaps = 31/175 (17%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIM---DDQST----LRIQGKGDKIRIVPLLPSV 206
           AR   +L +LY  GLR SE  + T        D   T    L + GKG+KIR+VP    +
Sbjct: 189 ARCRWVLTVLYLGGLRASELTATTMGAFFCRRDSHGTERWWLEVNGKGNKIRLVPATDEL 248

Query: 207 RKAILEY---YDLCP---FDLNLNIQLPLFRGIRG--KPLNPG--------VFQRYIRQL 250
              +  Y   Y L P   F     + LP+  G  G  K L+ G        VF +   +L
Sbjct: 249 IAELARYRRAYALPPTPQFGETRPLVLPVI-GKAGSEKALSRGALHLILKEVFGQAAARL 307

Query: 251 RR-------YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           R           +  S +AH LRH+  +H+     DLR ++   GH  LSTT  Y
Sbjct: 308 RARGPEWEPQAAVLASASAHWLRHTAGSHMTDQQVDLRFVRDNFGHSSLSTTSGY 362


>gi|322690987|ref|YP_004220557.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|322691351|ref|YP_004220921.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320455843|dbj|BAJ66465.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320456207|dbj|BAJ66829.1| putative phage integrase [Bifidobacterium longum subsp. longum JCM
           1217]
          Length = 351

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 118/301 (39%), Gaps = 31/301 (10%)

Query: 19  QNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++WL + L   RG S  T+++Y      ++ +L      + +           +  ++  
Sbjct: 21  RDWLHHWLPKVRGSSPKTVEAYRIGLESYVRWLETTEGTQRSHIGFGHFDRARLGRWVEW 80

Query: 78  RRTQK-IGDRSLKRSLSGIKSFLKY--LKKRKITTESNILNMRNLKKSNSLP-RALNEKQ 133
            RT++   DR++   ++ ++ FL +  L+   +T   N      +K     P   L E+ 
Sbjct: 81  MRTERGYSDRTIMLRMTTMRVFLDHAGLEHPALTALGNDAAGIRVKPPARKPVDHLGEEH 140

Query: 134 ALTLVDNVLLHTSHETKWI--DA---RNSAILYLLYGCGLRISEALSLTPQNI-MDDQST 187
              L+          T W   DA   RN  +L L+Y    RI E  +LT  ++ MD  + 
Sbjct: 141 TKALL----------TAWGTGDAKSRRNRMLLILMYDTAARIGELAALTIADVGMDKPAR 190

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           + + GK  K R+VPL    R  +  Y +   P     +   PLF   R   + P    R 
Sbjct: 191 VTLTGKRGKSRVVPLGERTRTHLAAYLEEFHPGPSMRDGDGPLFHSTRNGAIQPLSVDRI 250

Query: 247 IRQLRRYLG---------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
              L+             +P     H +R + A  L   G  L  I  +LGH  +STT  
Sbjct: 251 DEILKTAAARARRGTCPSMPERVHCHLIRRTRAMDLYQQGVPLPLIMQLLGHESMSTTSA 310

Query: 298 Y 298
           +
Sbjct: 311 F 311


>gi|294644652|ref|ZP_06722402.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294809546|ref|ZP_06768241.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|292639986|gb|EFF58254.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294443246|gb|EFG12018.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 356

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 33/47 (70%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           G+    T H  RHS+A+ LL NG D+ +I+S++GH  + TTQIYT++
Sbjct: 291 GIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHI 337


>gi|120401480|ref|YP_951309.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|120404558|ref|YP_954387.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|120406442|ref|YP_956271.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119954298|gb|ABM11303.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119957376|gb|ABM14381.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119959260|gb|ABM16265.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 349

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 123/302 (40%), Gaps = 32/302 (10%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI--GDR 86
           RG S  T+++Y  D      FL       + +       + + +     RRT +   G R
Sbjct: 32  RGFSAATVRAYAFDVANLSRFLVQQAVGLVAVDAPLVFDWIDWQGV---RRTDQPTSGHR 88

Query: 87  S--------LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL-------NE 131
           S        + R ++ +++  +YL    + T++ + + R  +      R L         
Sbjct: 89  SSTPPAASTVNRRVAAVRALFEYLVMTGVCTDNPVPSPRRGQGLRQSQRGLLGHLGPGRA 148

Query: 132 KQALTLVDNV-LLHTSHETKWIDA--------RNSAILYLLYGCGLRISEALSLTPQNIM 182
           +    LV     L  S  T  +DA        R+ A++ ++   GLR +EA  L   ++ 
Sbjct: 149 RSGGRLVRQPQRLPESLSTNDVDAFLATLATHRDRAMVLVMLLGGLRSAEARGLLLTDVD 208

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRG-IRGKPLNP 240
             +  LR+ GKG K R VP+  +    +  Y     P  L       + RG   G P++ 
Sbjct: 209 MGRRRLRVIGKGGKERHVPVDAAFFTELAAYLRWERPPGLATPQCFVVLRGPTTGAPVSE 268

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              +   R+ R   G       H LRH++ T L + G DL ++++++GH    TT  Y +
Sbjct: 269 AGLRSLFRRHRETSGA-TRVRPHRLRHTYGTELSAAGIDLLTLRALMGHVSPETTARYVH 327

Query: 301 VN 302
           ++
Sbjct: 328 LS 329


>gi|227517510|ref|ZP_03947559.1| integrase [Enterococcus faecalis TX0104]
 gi|227075030|gb|EEI12993.1| integrase [Enterococcus faecalis TX0104]
          Length = 424

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 28/168 (16%)

Query: 157 SAILYLLYGCGLRISEALSLTPQN-------IMDDQSTLRIQGKG---------DKIRIV 200
            AI+ LL G GLRISE   LT ++       I+     LR  G G           +R +
Sbjct: 241 DAIVILL-GTGLRISELCGLTDKDLDFENRVIIVSHQLLRNTGVGYYIDEPKTQSGVRKI 299

Query: 201 PLLPSVRKA----ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP----GVFQRYIRQLRR 252
           P+   V +A    I       PF ++      LF    G P+      G+F R +++  +
Sbjct: 300 PMNEEVYQAFQRVIKNRKGAKPFIIDGYANF-LFLKQNGYPMTAVDYGGMFGRLVKKYNK 358

Query: 253 YL--GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                LP +TT H +RH+F T L + G + +++Q I+GH  ++ T  Y
Sbjct: 359 SHEEALPKTTTPHAMRHTFCTRLANAGMNPKALQYIMGHSNITMTLNY 406


>gi|261344170|ref|ZP_05971814.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
 gi|282567765|gb|EFB73300.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
          Length = 338

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 21/145 (14%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           ++ +    G R SEA +LT   I ++  T  ++ KG + R +P+                
Sbjct: 197 VVKICLATGARWSEAENLTATQIRNNTITY-VRTKGKRNRSIPISDE------------- 242

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNG 277
               L  +LP  +G     L    +  +   L R  + LP   ++H LRH+FA+H + +G
Sbjct: 243 ----LANELP--KGQGNNRLFKSCYSAFRSALERTGIELPKQQSSHVLRHTFASHFMMSG 296

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVN 302
           G++  +Q ILGH  +  T  Y++ +
Sbjct: 297 GNILVLQRILGHTDIKMTMRYSHFS 321


>gi|152973790|ref|YP_001338829.1| plasmid F resolvase-like protein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150958572|gb|ABR80599.1| plasmid F resolvase-like protein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 244

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 173 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 216


>gi|288561749|ref|YP_003429155.1| putative integrase-recombinase [Bacillus pseudofirmus OF4]
 gi|288548381|gb|ADC52263.1| putative integrase-recombinase [Bacillus pseudofirmus OF4]
          Length = 407

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 121/310 (39%), Gaps = 44/310 (14%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL---------SYTE-IRAFISKRRTQ 81
           +K T + Y  D  QF  FL    E +  +     L         SY E ++  I +   +
Sbjct: 102 TKGTKKEYVRDLLQFFTFLQVTMENENDVPISSYLKGAHKRHIRSYQEWLKNLIRQDGKK 161

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--NLKKSNSLPRALNEKQALTLVD 139
                +  R  + +KSFL++L    I      +  +    +K     R+L+  +   L++
Sbjct: 162 GYPSSTRARKTTVVKSFLQWLYDEDIIKHPLPIAFKKSTYRKEERPDRSLSLNEVQDLLN 221

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST------LRIQGK 193
               H           N A+L +L+  GLR++E  +    N+  D S       LR+  K
Sbjct: 222 YYKDHPV---------NHALLLILFTTGLRVNEVATAKRSNVYYDASVNGGSYFLRVTTK 272

Query: 194 GDKIRIVPLLPSVRKAILEYYDL--CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI---- 247
           G+K R   +  +   +I     L     DL+     PLF   +G P +      YI    
Sbjct: 273 GNKRRDARIFNTTMDSIKRMRQLRGLKIDLDPTDDSPLFCTNKGNPYSYKYLSNYIIRII 332

Query: 248 -----RQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTN- 300
                  L+R  G   + + H  RH F T+ ++  G  +  +Q  +GH   STT+ Y + 
Sbjct: 333 GAADFDWLKRKEG---NISPHWARHFFVTYSIIQKGIPIDVVQHTVGHSSRSTTEAYIDK 389

Query: 301 -VNSKNGGDW 309
            ++ K    W
Sbjct: 390 YLDKKKDATW 399


>gi|329954304|ref|ZP_08295398.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
 gi|328528010|gb|EGF54996.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
          Length = 408

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 62/121 (51%), Gaps = 17/121 (14%)

Query: 203 LPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           L  + KAILE Y D  P   N  I LP+   I  + +N      Y++++    G+  + T
Sbjct: 295 LLDIPKAILEKYKDKLP---NGKI-LPV---ISNQKMND-----YLKEIAAICGIEKNLT 342

Query: 262 AHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIY---TNVNSKNGGDWMMEIYDQT 317
            H  RHS AT  LLSNG  + ++  ILGH  + TTQIY   T++   N  + + +  D T
Sbjct: 343 YHVARHSCATSVLLSNGVPIETVSKILGHTNIRTTQIYARITDLKVSNDMEMLAQKLDAT 402

Query: 318 H 318
           H
Sbjct: 403 H 403


>gi|256839902|ref|ZP_05545411.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
 gi|256738832|gb|EEU52157.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
          Length = 414

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 95/196 (48%), Gaps = 11/196 (5%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           RAL++++   L+   L  T  E +        +L++LY  G+   +  +LT + ++ D+ 
Sbjct: 119 RALHKEEVQRLLSPALRQTLPENR--REALDVLLFILYARGMVFKDVYNLT-RRMVTDRH 175

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
              ++ K      V ++P + + +  YY +  PF      ++   +G  GK L+     R
Sbjct: 176 IRYLRSKTGVPIDVEVVPELEEIMKRYYREDSPFVFPFLHEV--RKGCPGKELSEESALR 233

Query: 246 YI----RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY-TN 300
            I    R++ R  GL +  T + LRH++AT +L +   +  I   +GH  + TTQIY + 
Sbjct: 234 RINRSTREIGRKTGLSVPLTTYVLRHTWATLMLEDCQPVELISQCMGHSSIRTTQIYLSR 293

Query: 301 VNSKNGGDWMMEIYDQ 316
           ++S+     +  +YD+
Sbjct: 294 ISSRKVDTAVNGMYDR 309


>gi|116254979|ref|YP_770814.1| putative integrase/recombinase [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115259627|emb|CAK11608.1| putative integrase/recombinase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 398

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 120/300 (40%), Gaps = 65/300 (21%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFL---IFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           Q L  ERGL+  T+ S++  + +FL     L       +T QT+  + Y E        R
Sbjct: 125 QYLSTERGLAAATMGSHKLLSLRFLREVCPLGVDGFAALTPQTV--IGYVE--------R 174

Query: 80  TQKIGDRSLKRSLSGI-KSFLKYLKKRKITT---ESNILNMRNLKKSNSLPRALNEKQAL 135
               G     +++ G+ ++FL+YL  +   +      + ++R  + +  LP  L  ++  
Sbjct: 175 HALDGSADSGKAMCGVVRAFLRYLHLKGFISMPLAGCVPSIRRWRLAG-LPTFLPPEKVQ 233

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            ++D         T  +  R+ A+L +L   GLR SE  +L   +I     T+ + GKG 
Sbjct: 234 KVLD-----ACDRTTAMGRRDYAVLMILAKLGLRASEVSNLNLDDIDWQSGTILVHGKGR 288

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYL 254
           +   +PL   V  A++ Y                   IR G+P +    + ++R L  ++
Sbjct: 289 RQATMPLRHDVGTALVAY-------------------IRHGRPAS-ACRRLFLRTLAPHV 328

Query: 255 GLPLSTT---------------------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           G    +                      AH  RHS AT LL +G     I  +L H R S
Sbjct: 329 GFTSGSAITWIAKQALEQADIEGYAHHGAHLFRHSLATDLLRSGASFAEIGQLLRHRRPS 388


>gi|313158681|gb|EFR58070.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 389

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 70/143 (48%), Gaps = 21/143 (14%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRI-----QGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           GL  ++ + LT  +I  D +  R      Q  G + R V LLP V + + E Y     D+
Sbjct: 256 GLSHADVVKLTHADIHTDDNGERWIIDRRQKTGTQFR-VKLLP-VAEMLYERYK----DM 309

Query: 222 NLNIQLPLFRGIRGKPLNP--GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGG 278
           +L+       G R  PL          +R + R+ GL  + T H  RH+FAT + L+ G 
Sbjct: 310 HLS-------GDRVFPLKGTYNTLNMSLRHVARHAGLSFNPTIHLARHTFATTVTLTQGV 362

Query: 279 DLRSIQSILGHFRLSTTQIYTNV 301
            L ++  +LGH +++TTQIY  +
Sbjct: 363 PLETVSKMLGHKQITTTQIYAKI 385


>gi|253564012|ref|ZP_04841469.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|251947788|gb|EES88070.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|301161685|emb|CBW21225.1| putative integrase/transposase [Bacteroides fragilis 638R]
          Length = 393

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 48/164 (29%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           A L+  Y  GLR S+  +L+P+NI+   Q T  I              SV+         
Sbjct: 237 AFLFCCYA-GLRYSDFTNLSPENIVKMHQETWLI------------YKSVK--------- 274

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-------------------GLP 257
                N  ++LPL+    GK +   V  +Y   L  +                    GL 
Sbjct: 275 ----TNTEVRLPLYLLFEGKGIE--VLNKYQDDLADFFKLRDNSNVNKELLIIAKLSGLN 328

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              + HT RH+ AT L+ +G ++ ++Q +LGH  + TTQ+YTN+
Sbjct: 329 KRISFHTARHTNATLLIYSGVNITTVQKLLGHKSVKTTQVYTNI 372


>gi|255690096|ref|ZP_05413771.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|260624375|gb|EEX47246.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 308

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 112/267 (41%), Gaps = 65/267 (24%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT------------ESN 112
           +L   E++ F+ ++  Q++  +S+K  L  +K  +K+  K  I +            E+ 
Sbjct: 47  ELLENEVQEFVLQKLQQRLRAKSVKDILIVLKMVMKFGAKLGILSYQDWCIKFPPPQENK 106

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
            LN+ N+          N K  L  + N      H T     RN  I Y+    G+RI E
Sbjct: 107 QLNVLNIA---------NHKAILQYISN------HFT----FRNLGI-YICLTTGIRIGE 146

Query: 173 ALSLTPQNIMDDQSTLRIQG--------KGDKIR--IVPLLPSVRKAILEYYDLCPFDLN 222
             +LT  +I      + I+          G+KI   I+   P  + +I         D+ 
Sbjct: 147 ICALTWDDIDIINGVICIRKTIERIYILDGEKIHTEIIIGTPKTQNSIR--------DIP 198

Query: 223 LNIQL-----PLFRGIRGK---------PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           +N +L     PL + + GK         P  P  ++ Y +++   L +P     H LRHS
Sbjct: 199 MNKELLKMLRPLKKIVNGKFYVLTNEEKPTEPRTYRNYYKRMMEQLNIP-PLKFHGLRHS 257

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTT 295
           FAT  + +  D +++  ILGH  ++TT
Sbjct: 258 FATRCIESNCDYKTVSVILGHSDITTT 284


>gi|159904824|ref|YP_001548486.1| integrase family protein [Methanococcus maripaludis C6]
 gi|159886317|gb|ABX01254.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 323

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 84/181 (46%), Gaps = 12/181 (6%)

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           +++ LT + +++     +TK    R+  IL +L+  G R SE ++LT  ++  D   +++
Sbjct: 136 DRETLTKIIDMIAEGRSQTK---VRDVIILRMLWDTGCRASEVVNLTYFDVDMDTGKIKV 192

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---LN--PGVFQR 245
           +    K+            +L+YY      +    +  +F+  +G+    +N    VF++
Sbjct: 193 RNTKGKVERTVGCSKDTLNLLKYY--SNHQIYKTPKDHIFKNRKGEAKIEVNWISEVFRK 250

Query: 246 YIRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            +R+L+    +P +     H+LRH  A  LL  G  +  ++  LGH  L TT  Y +   
Sbjct: 251 AVRKLKESGDIPNNKKLVVHSLRHGRAVDLLDKGFPIDIVKEYLGHSSLETTLFYAHAKE 310

Query: 304 K 304
           +
Sbjct: 311 R 311


>gi|148377832|ref|YP_001256708.1| Phage family integrase [Mycoplasma agalactiae PG2]
 gi|148291878|emb|CAL59269.1| Phage family integrase [Mycoplasma agalactiae PG2]
          Length = 307

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 11/152 (7%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY 213
           +++L+   GLR SEA++LTP +    +  L I    +   +   LP     SVRK  L++
Sbjct: 138 LIFLIAKTGLRFSEAVALTPDDFDFTKQLLNISKTWNYKELGGFLPTKNKSSVRKIQLDW 197

Query: 214 YDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
             +  F      L    P+F   + K  N  +     R+ ++   +P   + H LRH+ A
Sbjct: 198 QTISRFASLVQGLEKNKPIF-VFKEKVFNSTINDILARRCKK-AKIPAVISIHGLRHTHA 255

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQ-IYTNV 301
           + LL  G  + S+   LGH  ++TT+ IY ++
Sbjct: 256 SILLYAGVSIASVAKRLGHSSMNTTERIYLHI 287


>gi|300837023|ref|YP_003754077.1| resolvase [Klebsiella pneumoniae]
 gi|299474827|gb|ADJ18651.1| resolvase [Klebsiella pneumoniae]
          Length = 259

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|255015532|ref|ZP_05287658.1| putative bacteriophage integrase [Bacteroides sp. 2_1_7]
          Length = 371

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 14/146 (9%)

Query: 163 LYGC--GLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           L+ C   LR+S+ LSL  + I+D  +  + +     K +   ++P +    LE    CP 
Sbjct: 223 LFSCLTSLRLSDILSLCWEEIVDFAAGGKCVHTITQKTKTEDIIP-ISDEALELIGYCPE 281

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
              L     +F+G     L     Q+ +++  R  G+  + T H+ R ++AT   + G D
Sbjct: 282 KKGL-----VFKG-----LKRSWTQQPMKEWIRSAGITKNITFHSYRRTYATLQAAAGTD 331

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKN 305
           +R+IQS + H  ++TTQ Y  V   N
Sbjct: 332 IRTIQSNMAHKSITTTQRYMKVVDSN 357


>gi|70727580|ref|YP_254496.1| integrase [Staphylococcus haemolyticus JCSC1435]
 gi|68448306|dbj|BAE05890.1| integrase [Staphylococcus haemolyticus JCSC1435]
          Length = 404

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 23/167 (13%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQG------KGDKI------------RIVPLLPS--- 205
           G+RI E L++ P NI  +   L I G       G+K+            R + L      
Sbjct: 230 GMRIGELLAIQPDNIDFENKKLVIDGTIHWRKDGNKVGFKDTTKTASSYRTISLTTRSCD 289

Query: 206 -VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            +R+ +LE      +++    +  +F   RG  L      R I+   + +G+    T+HT
Sbjct: 290 ILRRVMLENKKAVQWEIMYVDRGFIFTSHRGNSLPLTSINRNIQIAAQNIGIEKHVTSHT 349

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           +RHS  + L   G  LR+I   +GH    TT QIY++V  +   D M
Sbjct: 350 MRHSHISLLSQLGVSLRAIMERVGHTDHKTTLQIYSHVTEQMDKDMM 396


>gi|53711957|ref|YP_097949.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60680159|ref|YP_210303.1| putative integrase/transposase [Bacteroides fragilis NCTC 9343]
 gi|52214822|dbj|BAD47415.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60491593|emb|CAH06345.1| putative integrase/transposase [Bacteroides fragilis NCTC 9343]
          Length = 393

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 48/164 (29%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           A L+  Y  GLR S+  +L+P+NI+   Q T  I              SV+         
Sbjct: 237 AFLFCCYA-GLRYSDFTNLSPENIVKMHQETWLI------------YKSVK--------- 274

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-------------------GLP 257
                N  ++LPL+    GK +   V  +Y   L  +                    GL 
Sbjct: 275 ----TNTEVRLPLYLLFEGKGIE--VLNKYQDDLADFFKLRDNSNVNKELLIIAKLSGLN 328

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              + HT RH+ AT L+ +G ++ ++Q +LGH  + TTQ+YTN+
Sbjct: 329 KRISFHTARHTNATLLIYSGVNITTVQKLLGHKSVKTTQVYTNI 372


>gi|238753673|ref|ZP_04615035.1| Integrase [Yersinia ruckeri ATCC 29473]
 gi|238708225|gb|EEQ00581.1| Integrase [Yersinia ruckeri ATCC 29473]
          Length = 95

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 5/78 (6%)

Query: 229 LFRGIRGK---PLNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSI 283
           +F+ ++ K    + P V    +RQL + +   LP     H LRH+FA+H + NGG++ ++
Sbjct: 1   MFKELKAKGNGKVYPDVDYLLVRQLLKEIAPDLPKGQAIHALRHTFASHFMMNGGNILTL 60

Query: 284 QSILGHFRLSTTQIYTNV 301
           Q ILGH  +  T  Y ++
Sbjct: 61  QKILGHSNILQTMTYAHL 78


>gi|297618820|ref|YP_003706925.1| integrase family protein [Methanococcus voltae A3]
 gi|297377797|gb|ADI35952.1| integrase family protein [Methanococcus voltae A3]
          Length = 295

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 122/272 (44%), Gaps = 23/272 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           SK TL+SY      F+ F    + E ITI       Y   R+   K     I   +  R 
Sbjct: 20  SKDTLKSYRASLNIFMNFFQEKSWETITIDDA-LFFYNNYRSHNGK----PIQISTTIRR 74

Query: 92  LSGIKSFLKYLKKRKITTESNI-LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           L+ +  F ++  + K    + + L +R L+     P+ L E+Q L+     LL +  E  
Sbjct: 75  LTDVNRFYEWAIENKYLINNPLKLYVRTLR-----PQ-LKERQCLSKNQAKLLLSKIE-- 126

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
             D         L   G+RISE ++++  ++ + D+S +   GKG+K R V +   +   
Sbjct: 127 --DYHYYIFTLFLIKTGVRISEFINISLNDMDLSDRSIIIKSGKGNKDRYVFIDDELLLH 184

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV---FQRYIRQLRRYLGLPLSTTAHTLR 266
           I +Y     F LN  I   LF    G  L+ G    ++RY+R + + + L +  T H LR
Sbjct: 185 IKQYLKYREF-LNPKID-RLFLTKGGYKLSEGQISDYRRYLRTISKDI-LNIIVTPHVLR 241

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           H+F T    +  ++  +  I+GH  ++TT  Y
Sbjct: 242 HTFGTLACESNMNIEILSKIMGHANVNTTMTY 273


>gi|329919718|ref|ZP_08276674.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners SPIN 1401G]
 gi|328937237|gb|EGG33663.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners SPIN 1401G]
          Length = 329

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 108/251 (43%), Gaps = 25/251 (9%)

Query: 61  QTIRQLSYTEIRAFISK----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           + +R++   ++R ++++    + + K+   +++R LS   SF  +L+      +S    +
Sbjct: 88  KNVREMETDDLRTYLTEYQQEKNSSKVTVDNIRRILS---SFFSWLEDENYILKSPARRI 144

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             +K + ++     ++    + DN            +AR+ A++ +L   G+R+ E + L
Sbjct: 145 HKVKAALTIKETYTDESLEKMRDNCE----------EARDLALIDMLASTGMRVGELVLL 194

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG- 235
              +I  ++    + GKG K R+V      +  +L Y      D        LF  +R  
Sbjct: 195 NRDDINFEERECVVFGKGSKERMVYFDARTKIHLLTYLRERTDD-----NPALFVSLRSP 249

Query: 236 -KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            + L  G  +  +R+L   L +      H  R + AT  +  G  +  +Q +LGH R+ T
Sbjct: 250 HERLKIGGVECRLRELGNKLNIE-KIHPHKFRRTLATMAIDKGMPIEQLQQLLGHKRIDT 308

Query: 295 TQIYTNVNSKN 305
           T  Y  V   N
Sbjct: 309 TLQYAMVKQSN 319


>gi|312902063|ref|ZP_07761324.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0470]
 gi|311290845|gb|EFQ69401.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0470]
          Length = 309

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 13/147 (8%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212
            + L+   GLR SEAL+LTP++    +  + I+   +         S       RK  ++
Sbjct: 141 FILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGFFQSTKNESSKRKVQID 200

Query: 213 YYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +     F     N+    P+F  ++G+  N  +  R ++ L R   +P+  T H+LRH+ 
Sbjct: 201 WQTAMQFSQLIRNMPPMEPIF--VKGRVFNSTINSR-LKVLCRRAQIPV-ITVHSLRHTH 256

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           A+ LL  G  + S+ + LGH  ++TTQ
Sbjct: 257 ASLLLFAGVSIASVATRLGHSSMTTTQ 283


>gi|213692031|ref|YP_002322617.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523492|gb|ACJ52239.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458143|dbj|BAJ68764.1| putative phage integrase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 391

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 117/274 (42%), Gaps = 38/274 (13%)

Query: 52  FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111
            Y EE+   + I  ++  E++A+IS       G  S++R    +    +   + K+  ++
Sbjct: 95  LYCEERWADRRIGTITRAEVQAWISDI-IASAGAPSVRRPYQTMLGICRMAVRDKLILDN 153

Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET---KWIDARNSAILYLLYGCGL 168
              N+   K    LPR  + +  LT+  + LL  + E    K + A   A++  L  CGL
Sbjct: 154 PCENVELPK----LPRRKSRRVYLTI--SRLLAFADECSRGKHLGAERRALVLTLGFCGL 207

Query: 169 RISEALSLTPQNIMDDQSTLRIQG--------------KGDKIRIVPLLPSVRKAILEYY 214
           R  EA +L  +++   +  L + G              K  + R VP+   V +A     
Sbjct: 208 RWGEAAALKARDLDFGRGVLHVGGNLVYVGARWVEGTPKNSEERDVPMPLIVMEA----- 262

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR----YIRQLRRYLGLPLS--TTAHTLRHS 268
            L P          +FR +RG P+      +    +   L R LG P     T H LRH+
Sbjct: 263 -LKPMCGEREPDERVFRDLRGGPIMKQSAAKTTGWWYHALVR-LGWPKEEWPTPHDLRHT 320

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
            A+  +  G +++++Q +LGH   S T  +Y ++
Sbjct: 321 AASLAVHAGANVKALQRMLGHKNASMTLDVYADL 354


>gi|154488041|ref|ZP_02029158.1| hypothetical protein BIFADO_01611 [Bifidobacterium adolescentis
           L2-32]
 gi|154083514|gb|EDN82559.1| hypothetical protein BIFADO_01611 [Bifidobacterium adolescentis
           L2-32]
          Length = 237

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 67/148 (45%), Gaps = 31/148 (20%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           +L L   CGLR  E   +  +++M D    +L + GKGDK RIVP+              
Sbjct: 94  MLRLGAECGLRRFEIAKVHSRDVMRDLVGWSLVVVGKGDKQRIVPIGD------------ 141

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST------TAHTLRHSFA 270
              DL L     L R   G  L PG +  ++     Y+G  LS       TAH+LRH +A
Sbjct: 142 ---DLAL-----LIRSANGY-LFPGRWSGHVES--SYVGRHLSDLLGDGWTAHSLRHRYA 190

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIY 298
           T   +   DL  +  +LGH  + TTQ Y
Sbjct: 191 TTTYAATRDLLLVSKLLGHASVETTQRY 218


>gi|157418199|ref|YP_001481271.1| resolvase [Escherichia coli APEC O1]
 gi|169546498|ref|YP_001711907.1| hypothetical protein pVM01_p058 [Escherichia coli]
 gi|301646995|ref|ZP_07246831.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 146-1]
 gi|331652534|ref|ZP_08353545.1| resolvase (Protein D) [Escherichia coli M718]
 gi|88770249|gb|ABD51686.1| resolvase [Escherichia coli APEC O1]
 gi|168831050|gb|ACA34831.1| unknown [Escherichia coli]
 gi|301074840|gb|EFK89646.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 146-1]
 gi|331049640|gb|EGI21706.1| resolvase (Protein D) [Escherichia coli M718]
          Length = 263

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 191 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 234


>gi|295697898|ref|YP_003602555.1| putative resolvase [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295060010|gb|ADF64747.1| putative resolvase [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 258

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYALHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|283786566|ref|YP_003366431.1| fimbrial regulatory protein FimB [Citrobacter rodentium ICC168]
 gi|282950020|emb|CBG89649.1| fimbrial regulatory protein FimB [Citrobacter rodentium ICC168]
          Length = 201

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 76/196 (38%), Gaps = 24/196 (12%)

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           N  + KK N L +  NE ++L    N   H         ARN  +  L +  G R SE  
Sbjct: 3   NSADNKKRNFLTQ--NEIESLLKAANTGPHA--------ARNYCLTLLCFIHGFRASEIC 52

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILEYYDLCPFDLNLNIQLP----- 228
            L   +I      + I+          PLL    K +  +       LN+ I  P     
Sbjct: 53  RLQISDIDLKAKCIYIRRLKKGFSTTHPLLGEEIKTLRNW-------LNIRISWPCSDSE 105

Query: 229 -LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
            LF   +G PL+   F + I       GLPL    H LRHS    L + G D R IQ  L
Sbjct: 106 WLFLSRKGNPLSRQQFYQIISAAGDQAGLPLEIHPHMLRHSCGFALANRGVDTRLIQDYL 165

Query: 288 GHFRLSTTQIYTNVNS 303
           GH  +  T  YT  N+
Sbjct: 166 GHRNIRHTVWYTASNA 181


>gi|265765299|ref|ZP_06093574.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
 gi|263254683|gb|EEZ26117.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
          Length = 393

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 48/170 (28%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGDKIRIVPLLPSVRKAI 210
           ++    A L+  Y  GLR S+  +L+P+NI+   Q T  I              SV+   
Sbjct: 231 LEKTKDAFLFCCYA-GLRYSDFTNLSPENIVKMHQETWLI------------YKSVK--- 274

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL---------------- 254
                      N  ++LPL+    GK +   V  +Y   L  +                 
Sbjct: 275 ----------TNTEVRLPLYLLFEGKGIE--VLNKYQDDLADFFKLRDNSNVNKELLIIA 322

Query: 255 ---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              GL    + HT RH+ AT L+ +G ++ ++Q +LGH  + TTQ+YTN+
Sbjct: 323 KLSGLNKRISFHTARHTNATLLIYSGVNITTVQKLLGHKSVKTTQVYTNI 372


>gi|262202503|ref|YP_003273711.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262202582|ref|YP_003273790.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262085850|gb|ACY21818.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262085929|gb|ACY21897.1| integrase family protein [Gordonia bronchialis DSM 43247]
          Length = 608

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 84/192 (43%), Gaps = 30/192 (15%)

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LPR L++  A  L+      T       D  +  I+ LL   G+RISE L LT   ++  
Sbjct: 327 LPRFLDDGAATKLLRAARADT-------DPLSRLIVELLARTGIRISELLGLTTDAVVQI 379

Query: 185 QST--LRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL--- 238
            +   LRI  GK    R +PL P +++ + ++ D            P   GIR   L   
Sbjct: 380 GTAFWLRIPLGKMHNDRYIPLHPQLKELLDDWID---------NHRPT--GIRTSRLLVE 428

Query: 239 --NPGVFQRYIRQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
              P    R    L R+    G+    TAH LRH+ AT  ++ G  L +I ++LGH  L+
Sbjct: 429 NHRPITSHRVTAALDRHAEAAGIG-HVTAHQLRHTLATQAINRGMSLDAIAALLGHKTLA 487

Query: 294 TTQIYTNVNSKN 305
            T +Y  +  + 
Sbjct: 488 MTMVYARIADRT 499


>gi|114566279|ref|YP_753433.1| integrase [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114337214|gb|ABI68062.1| putative integrase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 171

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 6/142 (4%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLN 224
           G R  + +S     I  D++ +   Q K D     PLL SV  AI++Y     P      
Sbjct: 6   GWRTRDIVSFRFNQIDWDKNVIHFNQSKTDIPVEYPLLSSVGNAIVDYLKHGRPKTDAKE 65

Query: 225 IQLPLFRGIRGKPLNP----GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
           I +      +G+PL+P     +  +Y+ +            AH+LRHS AT++L N   +
Sbjct: 66  IIVAADTAKKGQPLSPPTVHSIVSKYMSKANIKNWKSKKHGAHSLRHSLATNMLKNNVSM 125

Query: 281 RSIQSILGHFRLSTTQIYTNVN 302
             I +++GH    TT+IY +V+
Sbjct: 126 PVISTVMGHQSTETTKIYLSVD 147


>gi|255012221|ref|ZP_05284347.1| putative integrase/transposase [Bacteroides fragilis 3_1_12]
 gi|313150062|ref|ZP_07812255.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313138829|gb|EFR56189.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 393

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 48/164 (29%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           A L+  Y  GLR S+  +L+P+NI+   Q T  I              SV+         
Sbjct: 237 AFLFCCYA-GLRYSDFTNLSPENIVKMHQETWLI------------YKSVK--------- 274

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-------------------GLP 257
                N  ++LPL+    GK +   V  +Y   L  +                    GL 
Sbjct: 275 ----TNTEVRLPLYLLFEGKGIE--VLNKYQDNLADFFKLRDNSNVNKELLIIAKLSGLN 328

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              + HT RH+ AT L+ +G ++ ++Q +LGH  + TTQ+YTN+
Sbjct: 329 KRISFHTARHTNATLLIYSGVNITTVQKLLGHKSVKTTQVYTNI 372


>gi|262204532|ref|YP_003275740.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262087879|gb|ACY23847.1| integrase family protein [Gordonia bronchialis DSM 43247]
          Length = 608

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 84/192 (43%), Gaps = 30/192 (15%)

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LPR L++  A  L+      T       D  +  I+ LL   G+RISE L LT   ++  
Sbjct: 327 LPRFLDDGAATKLLRAARADT-------DPLSRLIVELLARTGIRISELLGLTTDAVVQI 379

Query: 185 QST--LRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL--- 238
            +   LRI  GK    R +PL P +++ + ++ D            P   GIR   L   
Sbjct: 380 GTAFWLRIPLGKMHNDRYIPLHPQLKELLDDWID---------NHRPT--GIRTSRLLVE 428

Query: 239 --NPGVFQRYIRQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
              P    R    L R+    G+    TAH LRH+ AT  ++ G  L +I ++LGH  L+
Sbjct: 429 NHRPITSHRVTAALDRHAEAAGIG-HVTAHQLRHTLATQAINRGMSLDAIAALLGHKTLA 487

Query: 294 TTQIYTNVNSKN 305
            T +Y  +  + 
Sbjct: 488 MTMVYARIADRT 499


>gi|194445766|ref|YP_002041997.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194404429|gb|ACF64651.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
          Length = 336

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 92/222 (41%), Gaps = 53/222 (23%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +K+G  SL   L+GI +F           +  +++    ++  SL + L+E  +    D+
Sbjct: 148 KKLGHWSLPNPLAGIPTF---------KVDEKMVSFLYPEEIKSLLQYLSESSS----DS 194

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           VL+               I  +    G R SEA +L    +   + T +   K  ++R +
Sbjct: 195 VLI---------------ITKICLATGARWSEAENLEGAQVTPYRITYK-NTKNGRVRSI 238

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG--VFQRYIRQLRRYLGLPL 258
           P+         E YD  P               RG+   P    F+R +   +  + LP 
Sbjct: 239 PISK-------ELYDEIPKK-------------RGRLFTPCRKTFERVV--AKAGIELPD 276

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               H LRH+FA+H + NGG++  ++ ILGH  +  T IY +
Sbjct: 277 GQCTHVLRHTFASHFMMNGGNILVLKEILGHSDIKMTMIYAH 318


>gi|10955352|ref|NP_053064.1| resolvase [Escherichia coli]
 gi|847970|gb|AAC44039.1| Rsv [Escherichia coli]
 gi|6009378|dbj|BAA84837.1| Resolvase [Escherichia coli]
          Length = 178

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 74/159 (46%), Gaps = 24/159 (15%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           D R+  +   ++  G+RI EA +LTP++   D     ++   +K+R+VPL          
Sbjct: 3   DQRHHMLFATMWNTGIRIGEARTLTPESFDLDGLRPFVRVLSEKVRLVPLT--------- 53

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNP---GVFQRYIRQLRR-------YLGLPLSTTA 262
             D+  F   +   +   R  R +PL P      + +++Q  +       +  +P+  T 
Sbjct: 54  --DVS-FVRQMESWMVTTRPRRREPLWPVTDETMRNWLKQAVKRAEADGVHFSIPV--TP 108

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 109 HTFRHSYIMHMLYHRQPRKVIQALAGHKDPRSMEVYTRV 147


>gi|226366649|ref|YP_002784432.1| phage integrase family protein [Rhodococcus opacus B4]
 gi|226245139|dbj|BAH55487.1| phage integrase family protein [Rhodococcus opacus B4]
          Length = 286

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 111/265 (41%), Gaps = 24/265 (9%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK---RRTQKIG 84
           +R LS  T+++Y       L F+A  T+       +  + +  + AF+      R   I 
Sbjct: 20  QRALSPATIRTYRDSWALLLTFVAERTQIPPHALELAHIDHRCVTAFLDHLENERGNSIA 79

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK-KSNSLPRA--LNEKQALTLVDNV 141
            R+L+  L+ IK+ L +           I  ++ +  K +  P+   L   Q   L+D +
Sbjct: 80  TRNLR--LAAIKAVLAFECATMPEHLETIAAVQAIPVKKHPRPQLSYLTATQVKALLDGI 137

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIV 200
                  T W   R+ A+  L    GLR+SE +SLT  ++ +   + +   GKG K R  
Sbjct: 138 -----DTTTWTGRRDQAMFTLAAHTGLRVSELISLTVDSVHLGTAAHVACTGKGRKHRAT 192

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYL-GLP- 257
           PL  +    +  Y      + + +    LF   RG+PL+   + QR    +RR     P 
Sbjct: 193 PLTTATAALLKTYL----HERHTHPGHALFPNPRGEPLSVDAIGQRLRTHVRRAARACPE 248

Query: 258 ---LSTTAHTLRHSFATHLLSNGGD 279
                 T HTLRH+ A   L+ G D
Sbjct: 249 LAGTHVTVHTLRHTAAMRFLAAGID 273


>gi|218128949|ref|ZP_03457753.1| hypothetical protein BACEGG_00521 [Bacteroides eggerthii DSM 20697]
 gi|217988912|gb|EEC55229.1| hypothetical protein BACEGG_00521 [Bacteroides eggerthii DSM 20697]
          Length = 411

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 22/153 (14%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDD----------QSTLRIQGKGDKIRIVPLLPSVRKA 209
            ++ C  GL  S+  SL  +N++ D          +  L  + K   I  +PLLP V  A
Sbjct: 250 FVFACFTGLAFSDVASLNKENLVQDNLGDWWIRKGRVKLEHRRKASSISNIPLLP-VPLA 308

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           ILE Y   P  +     LP+    +           Y++++  +  +  + T H  RH+F
Sbjct: 309 ILEKYKEHPTCIKKGCCLPVMCNQK--------MNSYLKEIADFCSIKKNLTTHVARHTF 360

Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T + L+N   L+ +  +LGH     TQ Y  V
Sbjct: 361 GTTVTLANNVPLQDVSVMLGHASTRMTQHYARV 393


>gi|160937784|ref|ZP_02085143.1| hypothetical protein CLOBOL_02676 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439223|gb|EDP16976.1| hypothetical protein CLOBOL_02676 [Clostridium bolteae ATCC
           BAA-613]
          Length = 278

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 125/298 (41%), Gaps = 43/298 (14%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E+L+E + +L     E   S  T+Q Y    R+ + FL+F   E+ T   +  L Y E  
Sbjct: 7   EILREYRIYL----TEHEKSHATIQKY---VRELVWFLSFLQGEEPTKAKV--LEYRE-- 55

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL----PRA 128
                +  Q    R++   LS I S+L YL             +R LK  +++     R 
Sbjct: 56  -----QLQQSHQARTVNAKLSAIHSYLDYLG-------LAACKVRFLKIQHTVFVDDSRD 103

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L E +   L+D          +  D+R   ++  +   G+R+SE   LT + +   ++ +
Sbjct: 104 LTEAEYHRLLDAA-------KRKKDSRLYHVMLAICTTGIRVSELSFLTVEALHKGKAEI 156

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R++GK   IR + L   + + +  Y               LF    GKPL+       ++
Sbjct: 157 RMKGK---IRTILLTKELCRKLNAYAKEKGIRTGY-----LFCTRTGKPLDRSNICHDMK 208

Query: 249 QLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +L R   + P     H LRH FA    +   +L  +  ILGH  + TT+IY  + ++ 
Sbjct: 209 KLCRAARVNPEKVFPHNLRHLFAKCYYAIKKNLAYLADILGHASVDTTRIYVAMGTRE 266


>gi|221218554|ref|YP_002527512.1| hypothetical protein pO103_57 [Escherichia coli]
 gi|310286463|ref|YP_003937724.1| resolvase (protein D) [Escherichia coli]
 gi|215252882|gb|ACJ63541.1| conserved hypothetical protein [Escherichia coli]
 gi|308826792|emb|CBX36056.1| resolvase (Protein D) [Escherichia coli]
          Length = 263

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 191 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 234


>gi|170650847|ref|YP_001739996.1| resolvase [Escherichia coli SMS-3-5]
 gi|170522123|gb|ACB20300.1| resolvase [Escherichia coli SMS-3-5]
 gi|312949050|gb|ADR29876.1| Resolvase [Escherichia coli O83:H1 str. NRG 857C]
          Length = 258

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 186 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 229


>gi|327404951|ref|YP_004345789.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327320459|gb|AEA44951.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 421

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 14/114 (12%)

Query: 200 VPLLPSVRKAILEY--YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           VPLLP   + I +Y  ++ C      N  LP+    R        +  Y++++    G+ 
Sbjct: 300 VPLLPIPLEIIAKYQEHEYCK---KYNKLLPVNSNQR--------YNSYLKEIVDLCGIN 348

Query: 258 LSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              T+H  RH+FAT + L+NG  + ++  +LGH  + TTQIY  V  +   D M
Sbjct: 349 KKLTSHIARHTFATTVTLANGVPIETVSRMLGHTNIRTTQIYAKVVEQKVSDDM 402


>gi|299142947|ref|ZP_07036073.1| integrase [Prevotella oris C735]
 gi|298575563|gb|EFI47443.1| integrase [Prevotella oris C735]
          Length = 421

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 35/189 (18%)

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMD 183
           PR++ +++   ++D        E +W + R    L++ + C  GL I +  +L  +NI+ 
Sbjct: 237 PRSITQEELEHIID-------LEIEWENYRIVRDLFV-FSCFSGLAIFDVRNLREENIVL 288

Query: 184 DQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-- 238
           ++  L I+G+  K +    V +LP  +  +  Y                 RGIR   +  
Sbjct: 289 EEGELCIKGRRMKTKTPYRVQVLPPAQTIMNRY-----------------RGIRAGFVFD 331

Query: 239 --NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTT 295
                V    +  ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TT
Sbjct: 332 VPTTDVILNGMHYIQRNIGMETPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTT 391

Query: 296 QIYTNVNSK 304
           Q+Y  V+S+
Sbjct: 392 QVYAAVSSE 400


>gi|255021792|ref|ZP_05293815.1| fimbriae recombinase [Acidithiobacillus caldus ATCC 51756]
 gi|254968768|gb|EET26307.1| fimbriae recombinase [Acidithiobacillus caldus ATCC 51756]
          Length = 250

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 86/192 (44%), Gaps = 23/192 (11%)

Query: 130 NEKQALTLVD-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           +E++ LT ++ + LL  + + +    R+  ++ L+Y  GLR++EA +L    +  +   L
Sbjct: 58  SERKHLTALEIDRLLAATKDNERTGLRDRCLILLMYRHGLRVTEACALQLDQVDLESKVL 117

Query: 189 ---RIQG--------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRG 232
              R++G        + ++IR++    + R   L  +         ++Q P     +F  
Sbjct: 118 HVTRLKGGLSTSHPLRNEEIRLLRSWLNERARWLRRWQ------KHDLQTPPDRQAVFLS 171

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +RG+ L+     + +R      GL L    H LRH+    L   G D R IQ  LGH  +
Sbjct: 172 VRGQALSRNTVWQLLRAYGEAAGLSLPPHPHMLRHACGYALADQGTDTRLIQDYLGHRNI 231

Query: 293 STTQIYTNVNSK 304
             T  YT  N +
Sbjct: 232 QHTVRYTATNVR 243


>gi|237708454|ref|ZP_04538935.1| transposase [Bacteroides sp. 9_1_42FAA]
 gi|229457675|gb|EEO63396.1| transposase [Bacteroides sp. 9_1_42FAA]
          Length = 430

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 22/153 (14%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDD----------QSTLRIQGKGDKIRIVPLLPSVRKA 209
            ++ C  GL  S+  SL  ++++ D          +  L  + K   I  +PLLP V  A
Sbjct: 269 FVFACFTGLAFSDVASLNNEHLVQDNLGDWWIRKGRVKLERRRKASSISNIPLLP-VPLA 327

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           ILE Y   P  +     LP+    +           Y++++  + G+  + T H  RH+F
Sbjct: 328 ILEKYREHPACIKKGCCLPVMCNQK--------MNSYLKEIADFCGIKKNLTTHVARHTF 379

Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T + L+N   L+ +  +LGH     TQ Y  V
Sbjct: 380 GTTVTLANNVPLQDVSVMLGHASTRMTQHYARV 412


>gi|329996758|ref|ZP_08302555.1| site-specific recombinase, phage integrase family [Klebsiella sp.
           MS 92-3]
 gi|328539320|gb|EGF65345.1| site-specific recombinase, phage integrase family [Klebsiella sp.
           MS 92-3]
          Length = 241

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 170 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 213


>gi|153938928|ref|YP_001392711.1| phage integrase family site specific recombinase [Clostridium
           botulinum F str. Langeland]
 gi|152934824|gb|ABS40322.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum F str. Langeland]
 gi|295320692|gb|ADG01070.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum F str. 230613]
          Length = 199

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 89/191 (46%), Gaps = 12/191 (6%)

Query: 127 RALNEKQALTLVDNVLL-HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           + L +++A+ L + ++    SH       R+ A+  + Y CGLR SE   +   +   D+
Sbjct: 10  KYLTQQEAIRLFNAIIFSDNSHA-----VRDLALFRVAYRCGLRASEISLIKLDDYNADK 64

Query: 186 STLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
             L  +  KG     + L  + +KA+  Y  +  + ++ N +  LF+  +  P++     
Sbjct: 65  GDLYCKRLKGSNNNTIRLDVTTKKALDAY--IRDYKISCNSE-TLFKSQKNNPISRQTLD 121

Query: 245 RYIRQLRRYLGLPLSTTAH--TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             +++  +   +   +  H  TL+H+ A HL  +  D++ +Q  LGH  +S T+I+    
Sbjct: 122 YLMKKYCKIANISDKSKHHFHTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEIHFQFT 181

Query: 303 SKNGGDWMMEI 313
           +K      M++
Sbjct: 182 TKQQEKMYMKL 192


>gi|209921988|ref|YP_002296061.1| resolvase [Escherichia coli SE11]
 gi|307313345|ref|ZP_07592968.1| integrase family protein [Escherichia coli W]
 gi|209915166|dbj|BAG80239.1| resolvase [Escherichia coli SE11]
 gi|306906767|gb|EFN37277.1| integrase family protein [Escherichia coli W]
 gi|315063802|gb|ADT78128.1| Resolvase [Escherichia coli W]
 gi|323380941|gb|ADX53208.1| integrase family protein [Escherichia coli KO11]
          Length = 259

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|254438890|ref|ZP_05052384.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198254336|gb|EDY78650.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 420

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 124/298 (41%), Gaps = 34/298 (11%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT--IQTIRQLSYTEI 71
           L +E + +L++   +RGLS+ T+  Y C     L F   +   K    +  +  +   +I
Sbjct: 124 LKREYETYLRS---QRGLSQDTI--YHC-----LRFCDRFLTAKFGTGLGELNTIKPGDI 173

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRAL 129
             FI + R  +   R  K   S +++  ++L     T    SN +      KS  +PR L
Sbjct: 174 TGFILRLREAQNAPRD-KTGPSHLRNLFQFLFWSGKTERNLSNAVPKARQPKSTGIPRYL 232

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
             +Q      N L+    E +    RN A+L L+   GLR  E  ++   +I      + 
Sbjct: 233 EPEQV-----NRLIEVVREHRKTGRRNYAMLMLIARLGLRAPEVTAIELDDIDWRAGEIL 287

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
           I+GK      +P+   V +AI++Y           L ++++ PL R    + L   +   
Sbjct: 288 IRGKRQLHDRMPMPSEVGEAIVDYIQNERRGPERALFVSVKPPLKRFKDAQILRWILRDA 347

Query: 246 Y----IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           Y    I   + Y+G       H LRHS AT +L  G  L  I  +L H    TT IY 
Sbjct: 348 YDATGISPPQAYIG------THILRHSLATDMLRKGASLDEIGDVLRHRSAMTTTIYA 399


>gi|300215391|gb|ADJ79804.1| Integrase [Lactobacillus salivarius CECT 5713]
          Length = 365

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 75/160 (46%), Gaps = 6/160 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI  L+ G GLR+SE +++  +++  + + + +  KG+K   V +     + +  Y 
Sbjct: 205 RDLAINALMLGSGLRLSEVVNINIEDLDFENNRVAVLRKGNKKDSVRIAAFAMEYLANYR 264

Query: 215 DLCPFDLNLN-IQLPLFRGI-RG--KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           D+       +  +   F  I RG  K +     ++ + +  +  G  +  T H LRH+ A
Sbjct: 265 DIRASRYRADKYEKAFFLAISRGGSKRITGSAIEKMVSKYSK--GFKVRVTPHKLRHTLA 322

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           T L     +L      LGH   +TT +YT++++    D +
Sbjct: 323 TRLYKQTNNLVLTAQQLGHSSTATTTLYTHIDNDETTDAL 362


>gi|225568371|ref|ZP_03777396.1| hypothetical protein CLOHYLEM_04448 [Clostridium hylemonae DSM
           15053]
 gi|225162819|gb|EEG75438.1| hypothetical protein CLOHYLEM_04448 [Clostridium hylemonae DSM
           15053]
          Length = 330

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 4/148 (2%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A++   Y   +R+SE  +L  +++      L + GKG+K R V L       + EY 
Sbjct: 173 RDKAMMEFFYSTAVRVSELAALNREDVHFVSKDLIVMGKGNKERTVYLNDRTNMYMKEYL 232

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           +    D N  + + L +   G+    G+ +  IR+  +  G+      H  R + AT+ L
Sbjct: 233 E-SRTDSNQALFVSL-KKPHGRLGKTGI-EDIIRRTGQIAGVE-RAYPHRFRRTAATNAL 288

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           + G  ++ +  +LGH +L TT +Y +V+
Sbjct: 289 NRGMPVQEVAQLLGHAKLETTMVYCSVD 316


>gi|145321085|gb|ABP63570.1| integrase [Pseudomonas putida]
          Length = 297

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 69/159 (43%), Gaps = 37/159 (23%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207
           LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R         
Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198

Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                                  +A   +     F  + +   P    +R   +    FQ
Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
           R  ++     G+    T HTLRHSFAT LL +G D+R++
Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTV 297


>gi|118581964|ref|YP_903214.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
 gi|118504674|gb|ABL01157.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
          Length = 402

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 24/174 (13%)

Query: 158 AILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           A L +L   G R  E +SL  +N+ +D++     + K  + R V L    ++ I      
Sbjct: 238 AALRMLLYTGCRREEIMSLRWENVRLDEERIFLPKTKNGRSRTVHLNARAKEVIQ----- 292

Query: 217 CPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLSTTA------HTLR 266
                +L  +       RG     P   G  + YI  LR+                H LR
Sbjct: 293 -----DLQARKDQEDRTRGSEYVFPSRQGTKKGYIYDLRKPFEKACLNAGIDNFRIHDLR 347

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS---KNGGDWMMEIYDQT 317
           H+FA+  +S+G DL ++Q +LGH  ++ TQ Y ++N+   K   + + E++D+ 
Sbjct: 348 HTFASMAVSSGADLYAVQRLLGHQDIAMTQRYAHLNADDLKKATEGVSEMFDRA 401


>gi|327402450|ref|YP_004343288.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327317958|gb|AEA42450.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 404

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 20/169 (11%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-- 217
           ++  Y  GLRIS+ L L   +  D      I+  G +I I   +P++   I+E Y+L   
Sbjct: 242 VFAAYSGGLRISDILQLQWIHFDDSHINFTIKKTGSQISIK--IPNIALNIIEKYNLTQS 299

Query: 218 ----------PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                     P D  L   +   + I        V  + ++ L +   +  + + H  RH
Sbjct: 300 EKTSYIFPMLPEDTYLRDAIGQDKAISSAT---AVINKNLKTLAKLAKIEKNISFHISRH 356

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN-VNSKNGGDWMMEIYD 315
           ++AT  L  G  +  +  ++GH  +  TQIY   VNS+   D  M+I++
Sbjct: 357 TWATRALRKGMSIDKVSKLMGHSAIKETQIYAKIVNSE--LDKAMDIFN 403


>gi|312865168|ref|ZP_07725396.1| site-specific tyrosine recombinase XerS [Streptococcus downei
           F0415]
 gi|311099279|gb|EFQ57495.1| site-specific tyrosine recombinase XerS [Streptococcus downei
           F0415]
          Length = 356

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 125/313 (39%), Gaps = 51/313 (16%)

Query: 35  TLQSYECDTRQFLIFL--AFYTEEK----ITIQTIRQLSYTEIRAFISKRRTQK------ 82
           TL  Y  + R+F  +L  A  T+ K    I +Q +  LS  ++ AFI   R +       
Sbjct: 37  TLYEYLKEYRRFFEWLMDADLTDAKKLADIPLQVLEHLSKKDMEAFILYLRERPSLNTYS 96

Query: 83  ----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--------PRALN 130
               +   ++ R+LS + S  KYL +            RN+ K  +          RA N
Sbjct: 97  TKNGVSQTTINRTLSALSSLYKYLTEEVENDNGEPYFYRNVMKKVATKKKKETLAARAEN 156

Query: 131 EKQALTLVDNVLLHTSHETKWIDA---------------RNSAILYLLYGCGLRISEALS 175
            KQ L L D  +    +  K  +                R+ AI+ LL   G+R+SEA++
Sbjct: 157 IKQKLFLGDETMEFLDYVDKEYEGKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVN 216

Query: 176 LTPQNIMDDQSTLRIQGKG---DKIRIV----PLLPSVRKAILEYYDLCPFDLNLNIQLP 228
           L  +++  +   + +  KG   D + +     P L +  K     Y     DL L   L 
Sbjct: 217 LDMKDVNLNMMVIEVTRKGGKRDSVNVASFAKPYLEAYLKVRKSRYKAEKGDLALF--LS 274

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
            +RG+  + ++    ++ + +  +     +  T H LRH+ AT L         +   LG
Sbjct: 275 EYRGVPNR-IDASSIEKMVGKYSQ--DFKIRVTPHKLRHTLATRLYDATKSQVLVSHQLG 331

Query: 289 HFRLSTTQIYTNV 301
           H     T +YT++
Sbjct: 332 HASTQVTDLYTHI 344


>gi|153005656|ref|YP_001379981.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5]
 gi|152029229|gb|ABS26997.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5]
          Length = 451

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 38/174 (21%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----------GKGDKIRIVP 201
           ID R   ++ L    GLR  E ++L   ++   + T+ +Q           KG + R +P
Sbjct: 223 IDPRIELLVLLGGDAGLRRGETIALEWTDVDLRRRTVHVQRSSWNGHVTLPKGGRSRRLP 282

Query: 202 LLPSVRKAI----------LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           L   + +A+          + YYD      N  I++                  ++++ +
Sbjct: 283 LTERLAEALRSHRHLKGPRVLYYDGGASPTNKEIRM------------------WVQRAQ 324

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           R   LP +   H LRH+F +HL   G   ++IQ + GH  L+TTQ Y +++  +
Sbjct: 325 RRAVLPATGAYHILRHTFCSHLAMQGATAKAIQELAGHQDLTTTQRYMHLSPAH 378


>gi|167761899|ref|ZP_02434026.1| hypothetical protein BACSTE_00242 [Bacteroides stercoris ATCC
           43183]
 gi|167700269|gb|EDS16848.1| hypothetical protein BACSTE_00242 [Bacteroides stercoris ATCC
           43183]
          Length = 333

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 71/156 (45%), Gaps = 37/156 (23%)

Query: 163 LYGC--GLRISEALSLTPQN--IMDDQS-TLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           L+ C  GLRIS+ L+L  ++  I  DQ   LRI+ +  K +    LP   +A    Y+LC
Sbjct: 190 LFACLTGLRISDILNLQWEDFTIAPDQGYCLRIRTQ--KTQTEATLPISYEA----YELC 243

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY--------LGLPLSTTAHTLRHSF 269
                            G P    VF+   R +  Y         G+    T H  RHS+
Sbjct: 244 -----------------GTPGTGKVFKDLKRSMINYPLKSWLKKAGITKPITFHGFRHSY 286

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTN-VNSK 304
           A   +S G D+ ++  +L H  +STTQIY + VNSK
Sbjct: 287 AVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSK 322


>gi|146284649|ref|YP_001165602.1| phage integrase family protein [Enterobacter sp. 638]
 gi|145320782|gb|ABP62928.1| phage integrase family protein [Enterobacter sp. 638]
          Length = 257

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 187 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 230


>gi|301647508|ref|ZP_07247310.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 146-1]
 gi|301074355|gb|EFK89161.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 146-1]
          Length = 262

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 191 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 234


>gi|291515632|emb|CBK64842.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 417

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 128/300 (42%), Gaps = 31/300 (10%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEI 71
           + +ER N ++ L + +  S  TLQ +    R+    +  Y      +Q I  R + Y  +
Sbjct: 127 IFRERLNKMEQL-VGKEYSPATLQKF----REVFAHVERYIRTSYNMQDIPIRSVDYRFV 181

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           + F      Q +   ++ + +  ++  + +  K     +   +  R LK+   L     E
Sbjct: 182 KQFEEALIVQGLKAITINKIMQRVRQMVTFAFKCNYIQQDPFVEYRPLKERKRLVFLTQE 241

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTL 188
           +       + L H     K ++   +  L+ +Y  GL   EA +L P++I    D ++ +
Sbjct: 242 EL------HKLEHHHFAQKRLETVKNIYLFSVY-TGLAYHEAQALQPKHITKGFDGRNWI 294

Query: 189 R-IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
             ++ K D+   VPLLP   K I  + +    D  +  +      I  + +N      Y+
Sbjct: 295 TLVRQKTDREVSVPLLPQAEKLIAWFREFGSTDDYIQPR------ISNQKVNS-----YL 343

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKN 305
           R++   +G+    T HT R +FAT  LL N   +  +  +LGH  +S TQ  Y  V +KN
Sbjct: 344 REIADVVGIDKKLTHHTARKTFATTILLYNDVPIEVVSKLLGHSNISVTQHSYAQVLNKN 403


>gi|268611921|ref|ZP_06145648.1| hypothetical protein RflaF_20741 [Ruminococcus flavefaciens FD-1]
          Length = 310

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 16/149 (10%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY 213
           ++ L+   G+R SEA+++TP +      TL +    D        P     SVRK  L++
Sbjct: 140 LILLIAKTGMRFSEAIAVTPVDFDFTHQTLSVNKTWDYKGEGGFQPTKNKSSVRKIRLDW 199

Query: 214 YDLCPFDL---NLNIQLPLFRGIRGKPLNP---GVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             +  F      LN   P+F     K  N     V +R+ + +    G+P + + H LRH
Sbjct: 200 QTVGQFYAIVRELNDTAPIFVSKEKKIYNSTLNDVLERHCKAV----GIP-TISVHGLRH 254

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           + A+ LL +G  + S+   LGH  ++TTQ
Sbjct: 255 THASLLLFDGVSIASVAQRLGHSSINTTQ 283


>gi|322420262|ref|YP_004199485.1| integrase family protein [Geobacter sp. M18]
 gi|320126649|gb|ADW14209.1| integrase family protein [Geobacter sp. M18]
          Length = 340

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 110/237 (46%), Gaps = 30/237 (12%)

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +R  I K    K+   ++ R L  +K+ L+Y ++     E + ++++  K+     R L+
Sbjct: 108 VRKIIFKLEATKVKSATVNRYLEVLKTILRYKRQ-----EWDFIHLK--KQPKGRIRVLS 160

Query: 131 EKQALTLVDNVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           + +    +  +L  T H ++     + + ++ +L   G R+SE L+L   ++  D + + 
Sbjct: 161 KPEEDKAI-RLLRETDHCSRRHFYPQVADLVEILLDTGCRLSEVLNLPYDDVNFDTNLIS 219

Query: 190 IQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ--RY 246
           I   KGD+ R +P+   VR+ + E                  +  + KP +  ++Q  + 
Sbjct: 220 IWINKGDRPRSIPMTYRVRRILQERQ----------------KTNKKKPFSVTIYQAGKA 263

Query: 247 IRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              +R+ + L   T    H LRH+ AT L++ G DL  ++  LGH  +  T+ Y ++
Sbjct: 264 WAWVRKEMKLERDTEFVLHALRHTCATRLVNKGVDLYVVKEWLGHSSIQVTERYAHL 320


>gi|253563508|ref|ZP_04840965.1| mobilizable transposon [Bacteroides sp. 3_2_5]
 gi|251947284|gb|EES87566.1| mobilizable transposon [Bacteroides sp. 3_2_5]
          Length = 347

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 118/309 (38%), Gaps = 88/309 (28%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102
           T+Q   FLA++ +         Q  Y     F+  + T   GD ++       K F +YL
Sbjct: 69  TKQKADFLAYFKKMCRNKDQKWQFVYQHFYNFVKGQCT--FGDVNVDLC----KKFREYL 122

Query: 103 KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW----------- 151
                      LN + LK SN  P +LN           LL  ++  KW           
Sbjct: 123 -----------LNAKQLKHSNR-PMSLNSASGYYSTFRGLLKIAYRDKWFRENINDYLDK 170

Query: 152 IDARNSAILYL----------------------LYGC--GLRISEALSLTPQN--IMDDQ 185
           I+ ++    YL                      L+ C  GLRIS+ L+L  ++  I  DQ
Sbjct: 171 IEPQDVKKEYLTLNEVKQLAATPCDIPVLKAASLFACLTGLRISDILNLQWEDFTIAPDQ 230

Query: 186 S-TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
              LRI+ +  K +    LP   +A    Y+LC                 G P    VF+
Sbjct: 231 GYCLRIRTQ--KTQTEATLPISYEA----YELC-----------------GTPGTGKVFK 267

Query: 245 RYIRQLRRY--------LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
              R +  Y         G+    T H  RHS+A   +S G D+ ++  +L H  +STTQ
Sbjct: 268 DLKRSMINYPLKSWLKKAGITKPITFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQ 327

Query: 297 IYTN-VNSK 304
           IY + VNSK
Sbjct: 328 IYADLVNSK 336


>gi|256811516|ref|YP_003128885.1| integrase family protein [Methanocaldococcus fervens AG86]
 gi|256794716|gb|ACV25385.1| integrase family protein [Methanocaldococcus fervens AG86]
          Length = 330

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 74/153 (48%), Gaps = 10/153 (6%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEY 213
           R++ I+ LL+  G R+SE L+L   ++  D    +I+  K  + R V       + + +Y
Sbjct: 163 RDALIIRLLWDTGCRVSEILNLKYGDVDLDNGIFKIRNTKTHEERTVVCSSDTLELLRDY 222

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLN----PGVFQRYIRQLRRYLGLPLS--TTAHTLRH 267
                F++       LF+  +GK +       VF+R + +L+    +P +     H++RH
Sbjct: 223 ---VQFNVRQGSDDYLFQNSQGKKVRKEWISEVFRRAVNELKEEGKIPKNKRIVIHSIRH 279

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             A  LL+ G  +  ++  LGH  ++TT IY +
Sbjct: 280 GRAVDLLNKGVPIDIVKEYLGHRSMNTTLIYAH 312


>gi|300861379|ref|ZP_07107465.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|300849171|gb|EFK76922.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|315145852|gb|EFT89868.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2141]
          Length = 309

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 13/147 (8%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212
            + L+   GLR SEAL+LTP++    +  + I+   +         S       RK  ++
Sbjct: 141 FILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGFFQSTKNESSKRKVQID 200

Query: 213 YYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +     F     N+    P+F  +RG+  N  +  R ++ L +   +P+  T H+LRH+ 
Sbjct: 201 WQTAMQFSQLIRNMPPMEPIF--VRGRVFNSTINSR-LKVLCKRAQIPV-ITVHSLRHTH 256

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           A+ LL  G  + S+ + LGH  ++TTQ
Sbjct: 257 ASLLLFAGVSIASVATRLGHSSMTTTQ 283


>gi|189467538|ref|ZP_03016323.1| hypothetical protein BACINT_03928 [Bacteroides intestinalis DSM
           17393]
 gi|189435802|gb|EDV04787.1| hypothetical protein BACINT_03928 [Bacteroides intestinalis DSM
           17393]
          Length = 333

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 71/156 (45%), Gaps = 37/156 (23%)

Query: 163 LYGC--GLRISEALSLTPQN--IMDDQS-TLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           L+ C  GLRIS+ L+L  ++  I  DQ   LRI+ +  K +    LP   +A    Y+LC
Sbjct: 190 LFACLTGLRISDILNLQWEDFTIAPDQGYCLRIRTQ--KTQTEATLPISYEA----YELC 243

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY--------LGLPLSTTAHTLRHSF 269
                            G P    VF+   R +  Y         G+    T H  RHS+
Sbjct: 244 -----------------GTPGTGKVFKDLKRSMINYPLKSWLKKAGITKPITFHGFRHSY 286

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTN-VNSK 304
           A   +S G D+ ++  +L H  +STTQIY + VNSK
Sbjct: 287 AVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSK 322


>gi|167752569|ref|ZP_02424696.1| hypothetical protein ALIPUT_00823 [Alistipes putredinis DSM 17216]
 gi|167659638|gb|EDS03768.1| hypothetical protein ALIPUT_00823 [Alistipes putredinis DSM 17216]
          Length = 409

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 22/151 (14%)

Query: 166 CGLRISEALSLTPQNIMDDQS------TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           CGL  S+  +L  +NI           T R++   D    VPLL  + K IL+ Y     
Sbjct: 253 CGLAYSDVANLRQENIQKSFDGNLWIITKRVKTNTD--VNVPLL-DIPKMILKKYKGKLP 309

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGG 278
           D  +   LP+   I  + LN      Y++++    G+  + T H  RH+FAT   LS G 
Sbjct: 310 DGKI---LPV---ISNQKLNA-----YLKEIADICGIKKNLTFHLARHTFATTTTLSKGV 358

Query: 279 DLRSIQSILGHFRLSTTQIYTNV-NSKNGGD 308
            + ++  +LGH  + TTQIY  + NSK G D
Sbjct: 359 PIETVSKMLGHTNIETTQIYARITNSKIGSD 389


>gi|297374655|emb|CBL42942.1| phage integrase family protein [Candidatus Magnetobacterium
           bavaricum]
          Length = 324

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 94/211 (44%), Gaps = 32/211 (15%)

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           IK+   +  +R+    +     + LK  N++PR L+E Q    + +V       T   D 
Sbjct: 130 IKAAFSWAVEREYLKTNPFAGYKQLKYQNTIPRFLSENQ----IQDVY------TAIGDN 179

Query: 155 RNSAILYLLY-GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
           +   +++ LY   G R +E  ++   +I  D      + K  + R +P    + KAIL  
Sbjct: 180 KTYRLIFALYIHTGARRNEIQNIKWSDIKPDGIIFE-KTKTYRSRKIPTSKGL-KAILSE 237

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLN--PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           YD               RGI G+  N  P      ++   +  G+      H LRH+FA+
Sbjct: 238 YD---------------RGI-GQIFNITPSHISHVMKDYFKKAGIG-HFKLHDLRHTFAS 280

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            L+  G DLR+IQ +LGH   STT IY +++
Sbjct: 281 LLVQAGIDLRTIQVLLGHTSYSTTLIYAHLS 311


>gi|218281982|ref|ZP_03488300.1| hypothetical protein EUBIFOR_00869 [Eubacterium biforme DSM 3989]
 gi|218217038|gb|EEC90576.1| hypothetical protein EUBIFOR_00869 [Eubacterium biforme DSM 3989]
          Length = 307

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           KP+ P  ++ Y ++L + L +P     H LRHSFAT  + +  D +++  +LGH  +STT
Sbjct: 226 KPIEPRTYRNYYKKLCKQLDIP-ELKFHGLRHSFATRCIESKADYKTVSVLLGHSNISTT 284


>gi|90962769|ref|YP_536684.1| site-specific tyrosine recombinase XerS [Lactobacillus salivarius
           UCC118]
 gi|301300342|ref|ZP_07206546.1| site-specific tyrosine recombinase XerS [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|90821963|gb|ABE00601.1| Integrase [Lactobacillus salivarius UCC118]
 gi|300852026|gb|EFK79706.1| site-specific tyrosine recombinase XerS [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 365

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 75/160 (46%), Gaps = 6/160 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI  L+ G GLR+SE +++  +++  + + + +  KG+K   V +     + +  Y 
Sbjct: 205 RDLAINALMLGSGLRLSEVVNINIEDLDFENNRVAVLRKGNKKDSVRIAAFAMEYLANYR 264

Query: 215 DLCPFDLNLN-IQLPLFRGI-RG--KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           D+       +  +   F  I RG  K +     ++ + +  +  G  +  T H LRH+ A
Sbjct: 265 DIRASRYRADKYEKAFFLAISRGGSKRITGSAIEKMVSKYSK--GFKVRVTPHKLRHTLA 322

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           T L     +L      LGH   +TT +YT++++    D +
Sbjct: 323 TRLYKQTNNLVLTAQQLGHSSTATTTLYTHIDNDETTDAL 362


>gi|294673817|ref|YP_003574433.1| site-specific recombinase, phage integrase family [Prevotella
           ruminicola 23]
 gi|294472730|gb|ADE82119.1| site-specific recombinase, phage integrase family [Prevotella
           ruminicola 23]
          Length = 409

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 34/58 (58%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           ++ + +  G+    +AH  RH FAT  L+NG  + S+  +LGH  + TTQIY  + +K
Sbjct: 329 LKTVMKECGIDKPISAHCARHGFATMALTNGMPIESVSRVLGHTNIVTTQIYARITTK 386


>gi|293369636|ref|ZP_06616214.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292635340|gb|EFF53854.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 409

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 22/151 (14%)

Query: 166 CGLRISEALSLTPQNIMDDQS------TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           CGL  S+  +L  +NI           T R++   D    VPLL  + K IL+ Y     
Sbjct: 253 CGLAYSDVANLRQENIQKSFDGNLWIITKRVKTNTD--VNVPLL-DIPKMILKKYKGKLP 309

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGG 278
           D  +   LP+   I  + LN      Y++++    G+  + T H  RH+FAT   LS G 
Sbjct: 310 DGKI---LPV---ISNQKLNA-----YLKEIADICGIKKNLTFHLARHTFATTTTLSKGV 358

Query: 279 DLRSIQSILGHFRLSTTQIYTNV-NSKNGGD 308
            + ++  +LGH  + TTQIY  + NSK G D
Sbjct: 359 PIETVSKMLGHTNIETTQIYARITNSKIGSD 389


>gi|148727179|ref|YP_001285625.1| putative integrase [Aeromonas phage phiO18P]
 gi|110349314|gb|ABG73202.1| putative integrase [Aeromonas phage phiO18P]
          Length = 350

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 29/146 (19%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE----YY 214
           I+ L    G R SE   ++   I   + T   + KG + R VP+ P +   +       +
Sbjct: 199 IVMLCLSTGARWSEIEKVSRSQIGMGRITF-TKTKGKRNRTVPVAPWLLAMLPRRTGRLF 257

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           D C  D                      F++ IR  R  + LP   + H LRH+FA+H +
Sbjct: 258 DDCYAD----------------------FEKAIR--RAGIKLPAGQSTHVLRHTFASHFM 293

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTN 300
            NGG++  +Q ILGH  +  T  Y +
Sbjct: 294 MNGGNILVLQRILGHTDIKMTMRYAH 319


>gi|206563503|ref|YP_002234266.1| integrase [Burkholderia cenocepacia J2315]
 gi|198039543|emb|CAR55510.1| integrase [Burkholderia cenocepacia J2315]
          Length = 420

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 73/183 (39%), Gaps = 34/183 (18%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSVR 207
           R   +  LLY  GLRI+EA   T             ++  L + GKG + R+VP    + 
Sbjct: 230 RARWLFTLLYLGGLRITEAADTTMGRFFCRRDADGHERWWLDVTGKGGRQRLVPATDEMM 289

Query: 208 KAILEY-----YDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL--- 258
             +  Y         P D     + LP+  G   KPL      R ++Q+ R+    L   
Sbjct: 290 TELARYRRAHGLPALPVDGEPTPLVLPV--GQARKPLTRAALHRIVKQVFRHAADRLRAN 347

Query: 259 ------------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
                         +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +    
Sbjct: 348 GEAGEHAARVLEQASAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHADD--- 404

Query: 307 GDW 309
            DW
Sbjct: 405 -DW 406


>gi|34540643|ref|NP_905122.1| mobilizable transposon, int protein [Porphyromonas gingivalis W83]
 gi|34396957|gb|AAQ66021.1| mobilizable transposon, int protein [Porphyromonas gingivalis W83]
          Length = 367

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 21/148 (14%)

Query: 163 LYGC--GLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           L+ C  GLRIS+ L+L  ++     D    +RI+ +  K      LP   +A    Y+LC
Sbjct: 224 LFSCLTGLRISDILNLRWEDFTLAPDQGYCIRIRTQ--KTSTEATLPISYEA----YELC 277

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
               +  +   L R +   PL     +++I+Q     G+    T H  RHS+A   +S G
Sbjct: 278 GEPSSGKVFKGLQRSMINYPL-----KKWIKQA----GIMKHITFHCFRHSYAVIQISLG 328

Query: 278 GDLRSIQSILGHFRLSTTQIYTN-VNSK 304
            D+ ++  +L H  +STTQIY + VNSK
Sbjct: 329 TDIYTVSKMLTHKNVSTTQIYADLVNSK 356


>gi|315171544|gb|EFU15561.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1342]
          Length = 309

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 13/147 (8%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212
            + L+   GLR SEAL+LTP++    +  + I+   +         S       RK  ++
Sbjct: 141 FILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGFFQSTKNESSKRKVQID 200

Query: 213 YYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +     F     N+    P+F  +RG+  N  +  R ++ L +   +P+  T H+LRH+ 
Sbjct: 201 WQTAMQFSQLIRNMPPMEPIF--VRGRVFNSTINSR-LKVLCKRAQIPV-ITVHSLRHTH 256

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           A+ LL  G  + S+ + LGH  ++TTQ
Sbjct: 257 ASLLLFAGVSIASVATRLGHSSMTTTQ 283


>gi|312869158|ref|ZP_07729332.1| site-specific tyrosine recombinase XerS [Lactobacillus oris
           PB013-T2-3]
 gi|311095404|gb|EFQ53674.1| site-specific tyrosine recombinase XerS [Lactobacillus oris
           PB013-T2-3]
          Length = 354

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 117/290 (40%), Gaps = 37/290 (12%)

Query: 58  ITIQTIRQLSYTEIRAFISK-RRTQKIGDR-----SLKRSLSGIKSFLKYLK-------- 103
           I+ + + +L   +I  +I   + TQ    R     S+ RS++ ++S  KYL         
Sbjct: 63  ISTKALEKLRRNDIMLYIDHLKHTQNAQGRLNSPTSINRSINALRSLFKYLTVTADINDG 122

Query: 104 ----------KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET---- 149
                     K     ++  LN R    S+ + R   +   +  + N   H   +     
Sbjct: 123 EPYFYRNVMLKIDSLNDTQTLNYRAHTLSSHMYRGQMKFDFINFIQNEYPHKCDKRALPA 182

Query: 150 -KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
            K    R+ AI+ L+ G G+R+SEA ++   ++  +Q  L +  KG +   VP+ P   +
Sbjct: 183 FKVNRERDIAIIALILGTGVRVSEAANVNLGDLNINQGLLDVVRKGGQRDSVPIAPWSIQ 242

Query: 209 AILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
            + +Y  +          +    L ++ G   + +     +R +++     G PL  T H
Sbjct: 243 YVQDYLAIRAQRYHALKKDTAFFLTVYHG-ETRRMTANAIERMVKKYSTAFGHPL--TPH 299

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            LRH+ A+ +     D   +   LG    S T +YT+V      + + EI
Sbjct: 300 KLRHTLASEMYEVTKDQVLVAQQLGQKGTSATDLYTHVGVTQQREALDEI 349


>gi|294647494|ref|ZP_06725075.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294807460|ref|ZP_06766263.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|317476756|ref|ZP_07935999.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|292637154|gb|EFF55591.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294445355|gb|EFG14019.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|316906931|gb|EFV28642.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 409

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 22/151 (14%)

Query: 166 CGLRISEALSLTPQNIMDDQS------TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           CGL  S+  +L  +NI           T R++   D    VPLL  + K IL+ Y     
Sbjct: 253 CGLAYSDVANLRQENIQKSFDGNLWIITKRVKTNTD--VNVPLL-DIPKMILKKYKGKLP 309

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGG 278
           D  +   LP+   I  + LN      Y++++    G+  + T H  RH+FAT   LS G 
Sbjct: 310 DGKI---LPV---ISNQKLNA-----YLKEIADICGIKKNLTFHLARHTFATTTTLSKGV 358

Query: 279 DLRSIQSILGHFRLSTTQIYTNV-NSKNGGD 308
            + ++  +LGH  + TTQIY  + NSK G D
Sbjct: 359 PIETVSKMLGHTNIETTQIYARITNSKIGSD 389


>gi|256960370|ref|ZP_05564541.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|293384343|ref|ZP_06630228.1| DNA integration/recombination/inversion protein [Enterococcus
           faecalis R712]
 gi|293388421|ref|ZP_06632929.1| DNA integration/recombination/inversion protein [Enterococcus
           faecalis S613]
 gi|312908543|ref|ZP_07767487.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|312908987|ref|ZP_07767849.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|256950866|gb|EEU67498.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|291078335|gb|EFE15699.1| DNA integration/recombination/inversion protein [Enterococcus
           faecalis R712]
 gi|291082196|gb|EFE19159.1| DNA integration/recombination/inversion protein [Enterococcus
           faecalis S613]
 gi|310625510|gb|EFQ08793.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|311290687|gb|EFQ69243.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|315169211|gb|EFU13228.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1341]
          Length = 309

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 13/147 (8%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212
            + L+   GLR SEAL+LTP++    +  + I+   +         S       RK  ++
Sbjct: 141 FILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGFFQSTKNESSKRKVQID 200

Query: 213 YYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +     F     N+    P+F  ++G+  N  +  R ++ L R   +P+  T H+LRH+ 
Sbjct: 201 WQTAMQFSQLIRNMPPMEPIF--VKGRVFNSTINSR-LKVLCRRAQIPV-ITVHSLRHTH 256

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           A+ LL  G  + S+ + LGH  ++TTQ
Sbjct: 257 ASLLLFAGVSIASVATRLGHSSMTTTQ 283


>gi|91206303|ref|YP_538657.1| resolvase [Escherichia coli UTI89]
 gi|91075754|gb|ABE10634.1| resolvase [Escherichia coli UTI89]
          Length = 269

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 40/182 (21%)

Query: 153 DARNSAILYLLYGCGLRISEALSLT-------PQNIMDDQSTL--------RIQGK---G 194
           D R   +L  L+  G RI+EAL+LT       P       +TL        R  G+   G
Sbjct: 66  DLRRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRTPAG 125

Query: 195 DKI-RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR 251
            +  R+VPL  S   + L+        +   +++PL R  +  G+     +++   R +R
Sbjct: 126 QQTHRLVPLSDSWYVSQLQ-------TMVATLKIPLERRNKRTGRTEKARIWEVTDRTVR 178

Query: 252 RYLG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            ++G              +  T HT RHS A H+L  G  L+ +QS++GH  +S+T++YT
Sbjct: 179 TWIGEAVAAAATDGVTFSVPVTPHTFRHSDAMHMLYAGIPLKVLQSLMGHKSISSTEVYT 238

Query: 300 NV 301
            V
Sbjct: 239 KV 240


>gi|260600009|ref|YP_003212747.1| Resolvase [Cronobacter turicensis z3032]
 gi|260219356|emb|CBA34708.1| Resolvase [Cronobacter turicensis z3032]
          Length = 284

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 214 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSVSSTEVYTKV 257


>gi|295086221|emb|CBK67744.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 213

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 20/144 (13%)

Query: 163 LYGC--GLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           L+ C  GLRIS+ + L  +NI+   D    + I  K  K R   +LP   +A+     LC
Sbjct: 70  LFSCLTGLRISDIIRLQWENIIRGADGGWCMHIVTK--KTRTEAVLPLSDEALA----LC 123

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
                  +    F+G     +   +   Y++   +  G+    T H  RH++AT  L+ G
Sbjct: 124 GERSTGQV----FKG-----MTQALLPLYLKDWIKSAGITKHITFHCFRHTYATLQLAAG 174

Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301
            DL +I  +L H  ++TTQ+Y +V
Sbjct: 175 TDLYTISKMLTHSNVATTQVYADV 198


>gi|325499381|gb|EGC97240.1| hypothetical protein ECD227_3478 [Escherichia fergusonii ECD227]
          Length = 326

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 22/144 (15%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +  L    G R +E  +L P  I + + T  ++ K  K RIVP+   + K + E      
Sbjct: 184 VALLCLSTGGRWTEVATLKPAQITNCRVTF-LKTKNGKKRIVPISEELEKKVKEEASAKL 242

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNG 277
           F ++                    ++++   LRR    +P +   H LRH+FA+H + NG
Sbjct: 243 FKVD--------------------YEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNG 282

Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301
           G++ ++Q ILGH  +  T  Y ++
Sbjct: 283 GNIIALQQILGHASIQQTMAYAHL 306


>gi|322383160|ref|ZP_08056982.1| integrase-like protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321152703|gb|EFX45334.1| integrase-like protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 360

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 20/165 (12%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            R++ I+ L+   GLR+SE ++LT  ++   + T+ +  KG+           R+  +E 
Sbjct: 190 VRDACIVSLILHSGLRVSEVVNLTLDDLDIKKKTIYVFRKGNNDGSFKTRVYFRQEAME- 248

Query: 214 YDLCPF-------------DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
            DL  +             +  L + +P  R   GK +     Q  + +  +  G P   
Sbjct: 249 -DLSRYLEIRETRYRPPKKEKALFLTIPNGRS-EGKMMTKRAMQEMVLKYAKRFGKPY-L 305

Query: 261 TAHTLRHSFAT-HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + H LRHSFAT + L N  DL   Q  LGH    TTQIY ++  K
Sbjct: 306 SVHKLRHSFATDYYLQN--DLYKTQEQLGHASSDTTQIYAHLTDK 348


>gi|298384323|ref|ZP_06993883.1| mobilizable transposon, int protein [Bacteroides sp. 1_1_14]
 gi|298262602|gb|EFI05466.1| mobilizable transposon, int protein [Bacteroides sp. 1_1_14]
          Length = 347

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 71/156 (45%), Gaps = 37/156 (23%)

Query: 163 LYGC--GLRISEALSLTPQN--IMDDQS-TLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           L+ C  GLRIS+ L+L  ++  I  DQ   LRI+ +  K +    LP   +A    Y+LC
Sbjct: 204 LFACLTGLRISDILNLQWEDFTIAPDQGYCLRIRTQ--KTQTEATLPISYEA----YELC 257

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY--------LGLPLSTTAHTLRHSF 269
                            G P    VF+   R +  Y         G+    T H  RHS+
Sbjct: 258 -----------------GTPGTGKVFKDLKRSMINYPLKSWLKKAGITKPITFHGFRHSY 300

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTN-VNSK 304
           A   +S G D+ ++  +L H  +STTQIY + VNSK
Sbjct: 301 AVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSK 336


>gi|296448773|ref|ZP_06890625.1| integrase family protein [Methylosinus trichosporium OB3b]
 gi|296253710|gb|EFH00885.1| integrase family protein [Methylosinus trichosporium OB3b]
          Length = 316

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 66/152 (43%), Gaps = 9/152 (5%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I   L   GLR +EA  L   ++  D + + ++GKG  +  +PL P    AIL       
Sbjct: 127 IARFLIITGLRRAEACRLAWSDVDLDGARMVVRGKGGTVDTLPL-PDAAIAILRAESGRH 185

Query: 219 FDLNLNIQLPLFRGIRGK-----PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            +L    Q+    G  GK     P+ P        + RR   L      H LRH+ AT L
Sbjct: 186 AELVFTYQVRHRWG--GKIGARVPIEPDTLGTAFWRARRAAKL-TDLRLHDLRHTAATRL 242

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +   G+L + Q  L H R++TT  Y +V   +
Sbjct: 243 VRATGNLAAAQKALRHRRITTTMRYAHVTEDD 274


>gi|295090532|emb|CBK76639.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 307

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/225 (20%), Positives = 95/225 (42%), Gaps = 20/225 (8%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           +  + S+L++ +      +S  L+M  +++ N L   ++E      + N LL       +
Sbjct: 101 IRALNSYLEFTR-----AKSQKLSMVKIQQRNYLENVISEAD-YEYLKNCLLRDEKYLYY 154

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
                  I+  +   G R+SE +    ++I +    L    KG+K+R + +  ++ +  L
Sbjct: 155 F------IIRFMAATGARVSEVIQFQAEDIRNGYKDL--YSKGNKVRRIYIPKALHQDAL 206

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFA 270
            + +             +F    GK + P   +  ++ L    G+ P     H+ RH FA
Sbjct: 207 RWLEASKIQSG-----DIFLNRFGKRITPAGIRGQLKVLALNYGINPDVVYPHSFRHRFA 261

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
              +   GD+  +  +LGH  + TT+IY   +S    D + ++ D
Sbjct: 262 KSFIEKCGDISLLSDLLGHRNIETTRIYLRRSSSEQYDIINKVVD 306


>gi|227891981|ref|ZP_04009786.1| site-specific tyrosine recombinase XerS [Lactobacillus salivarius
           ATCC 11741]
 gi|227866185|gb|EEJ73606.1| site-specific tyrosine recombinase XerS [Lactobacillus salivarius
           ATCC 11741]
          Length = 365

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 75/160 (46%), Gaps = 6/160 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI  L+ G GLR+SE +++  +++  + + + +  KG+K   V +     + +  Y 
Sbjct: 205 RDLAINALMLGSGLRLSEVVNINIEDLDFENNRVAVLRKGNKKDSVRIAAFAMEYLANYR 264

Query: 215 DLCPFDLNLN-IQLPLFRGI-RG--KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           D+       +  +   F  I RG  K +     ++ + +  +  G  +  T H LRH+ A
Sbjct: 265 DIRASRYRADKYEKAFFLAISRGGSKRITGSAIEKMVSKYSK--GFKVRVTPHKLRHTLA 322

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           T L     +L      LGH   +TT +YT++++    D +
Sbjct: 323 TRLYKQTNNLVLTAQQLGHSSTATTTLYTHIDNDETTDAL 362


>gi|255692131|ref|ZP_05415806.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|260622150|gb|EEX45021.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 409

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 22/151 (14%)

Query: 166 CGLRISEALSLTPQNIMDDQS------TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           CGL  S+  +L  +NI           T R++   D    VPLL  + K IL+ Y     
Sbjct: 253 CGLAYSDVANLRQENIQKSFDGNLWIITKRVKTNTD--VNVPLL-DIPKMILKKYKGKLP 309

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGG 278
           D  +   LP+   I  + LN      Y++++    G+  + T H  RH+FAT   LS G 
Sbjct: 310 DGKI---LPV---ISNQKLNA-----YLKEIADICGIKKNLTFHLARHTFATTTTLSKGV 358

Query: 279 DLRSIQSILGHFRLSTTQIYTNV-NSKNGGD 308
            + ++  +LGH  + TTQIY  + NSK G D
Sbjct: 359 PIETVSKMLGHTNIETTQIYARITNSKIGSD 389


>gi|163754475|ref|ZP_02161597.1| Tn5520-like integrase (transfer factor) [Kordia algicida OT-1]
 gi|161325416|gb|EDP96743.1| Tn5520-like integrase (transfer factor) [Kordia algicida OT-1]
          Length = 410

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 91/187 (48%), Gaps = 18/187 (9%)

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           KS  + RAL+ K+ + L++++   T      +DA+N  +++  Y  G+   + + L  +N
Sbjct: 207 KSKGIKRALSRKE-MKLMESI--DTIKNPNLLDAKN-YMVFSYYSGGMNFIDMMKLKWEN 262

Query: 181 IMDDQSTL-RIQGKGDKIRIVPLLPSVRKAILEYYD--------LCPFDLNLNIQLPLFR 231
           I +D+    R + KG+    V +L  V+K ++EYY         + P  L+ ++      
Sbjct: 263 IQEDRIVYTRSKTKGN--FTVKMLEPVKK-VVEYYKAQNRPTDYVFPILLSNDLSPIQIE 319

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
             + K L    F + ++++    G+  + T++ +RHSFAT+L   G     I   +GH  
Sbjct: 320 YRKNKTLR--AFNKKLKEIASIQGVKKNVTSYVIRHSFATNLKYAGISSDLISQTMGHHD 377

Query: 292 LSTTQIY 298
           +S T  Y
Sbjct: 378 VSVTNAY 384


>gi|312882545|ref|ZP_07742286.1| integrase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369945|gb|EFP97456.1| integrase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 342

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%)

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LP     H LRH+FA+H + NGGD+ +++ ILGH  ++ T  Y ++
Sbjct: 263 LPKGQKVHVLRHTFASHFIMNGGDILTLKEILGHCSINQTMTYAHL 308


>gi|169245911|gb|ACA50932.1| site-specific recombinase [Mycobacterium marinum DL240490]
          Length = 345

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 124/319 (38%), Gaps = 56/319 (17%)

Query: 21  WLQNLEIERGLSKL---TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA-FIS 76
           W      +R + K    T ++Y  D     + LA   +   T+ T   L+   +RA F  
Sbjct: 18  WFGEFLADRAIRKPSPHTTKAYRQDFEAVALLLAGGADAISTLPT-NALNKESLRAAFAV 76

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLPRALNEKQA 134
              T      S++R  S   +   +L        +N+L+   +       +P+AL +   
Sbjct: 77  YAETHSAA--SIRRCWSTWNTLCTFLYT------ANLLDANPMPAIGRPKVPKALPKSYT 128

Query: 135 LTLVDNVLLH------TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----- 183
              V+N++        ++  + W + R+ AI++     GLR  E   L   NI D     
Sbjct: 129 ADAVNNLIAAIDTDDGSARRSNWPE-RDRAIIFTALLTGLRADE---LIRANIGDIRCNA 184

Query: 184 DQSTLRIQGKGDKIRIVPL------------------LPSVRKAILEYYDLCPFDLNLNI 225
           D   L + GKG+K R +P                   +P +RK       +  F    + 
Sbjct: 185 DGGVLHVSGKGNKDRRIPCDTKLIEMLQRYLQTREDRIPHLRKRSASPDAMGRF----SP 240

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL----PLSTTAHTLRHSFATHLLSNGGDLR 281
             PLF G  G+ +  G  Q  I +  +  G+          H LRH+FAT L +    + 
Sbjct: 241 TAPLFVGSDGERITRGTLQYRILRGFKKAGINNDRAAGALVHGLRHTFATELANANVSVY 300

Query: 282 SIQSILGHFRLSTTQIYTN 300
           ++  +LGH  + T+Q Y +
Sbjct: 301 ALMKLLGHESMVTSQRYVD 319


>gi|325680238|ref|ZP_08159800.1| type I restriction modification DNA specificity domain protein
           [Ruminococcus albus 8]
 gi|324108055|gb|EGC02309.1| type I restriction modification DNA specificity domain protein
           [Ruminococcus albus 8]
          Length = 528

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 16/149 (10%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY 213
           ++ L+   G+R SEA+++TP +      TL +    D        P     SVRK  L++
Sbjct: 358 LILLIAKTGMRFSEAIAVTPADFDFTHQTLSVNKTWDYKGEGGFQPTKNKSSVRKIRLDW 417

Query: 214 YDLCPFDL---NLNIQLPLFRGIRGKPLNP---GVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             +  F      LN   P+F     K  N     V +R+ + +    G+P + + H LRH
Sbjct: 418 QTVGQFYAIVRELNDTAPIFVSKEKKIYNSTLNDVLERHCKAV----GIP-TISVHGLRH 472

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           + A+ LL +G  + S+   LGH  ++TTQ
Sbjct: 473 THASLLLFDGVSIASVAQRLGHSSINTTQ 501


>gi|301162340|emb|CBW21885.1| putative transposase [Bacteroides fragilis 638R]
          Length = 409

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 22/151 (14%)

Query: 166 CGLRISEALSLTPQNIMDDQS------TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           CGL  S+  +L  +NI           T R++   D    VPLL  + K IL+ Y     
Sbjct: 253 CGLAYSDVANLRQENIQKSFDGNLWIITKRVKTNTD--VNVPLL-DIPKMILKKYKGKLP 309

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGG 278
           D  +   LP+   I  + LN      Y++++    G+  + T H  RH+FAT   LS G 
Sbjct: 310 DGKI---LPV---ISNQKLNA-----YLKEIADICGIKKNLTFHLARHTFATTTTLSKGV 358

Query: 279 DLRSIQSILGHFRLSTTQIYTNV-NSKNGGD 308
            + ++  +LGH  + TTQIY  + NSK G D
Sbjct: 359 PIETVSKMLGHTNIETTQIYARITNSKIGSD 389


>gi|294793172|ref|ZP_06758318.1| integrase/recombinase, phage integrase family [Veillonella sp.
           6_1_27]
 gi|294456117|gb|EFG24481.1| integrase/recombinase, phage integrase family [Veillonella sp.
           6_1_27]
          Length = 329

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 8/155 (5%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           + R+ A++ +L   G+R+ E + L   +I  ++    + GKG K R+V    +  K  L+
Sbjct: 171 EPRDLALIDMLASTGMRVGELVLLNRDDINFEERECVVFGKGSKERMV-YFDARTKIHLQ 229

Query: 213 YYDLCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            Y     D N      LF  +R   + L  G  +R +R+L + L +      H  R + A
Sbjct: 230 NYLQERTDDN----PALFVSLRAPHERLQSGGVERRLRELGKKLDIE-KVHPHKFRRTLA 284

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           T  +  G  +  +Q +LGH R+ TT  Y  V   N
Sbjct: 285 TMAIDKGMPIEQLQQLLGHKRIDTTLQYAMVKQSN 319


>gi|283798863|ref|ZP_06348016.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
 gi|291073401|gb|EFE10765.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
          Length = 307

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/225 (20%), Positives = 95/225 (42%), Gaps = 20/225 (8%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           +  + S+L++ +      +S  L+M  +++ N L   ++E      + N LL       +
Sbjct: 101 IRALNSYLEFTR-----AKSQKLSMVKIQQRNYLENVISEAD-YEYLKNCLLRDEKYLYY 154

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
                  I+  +   G R+SE +    ++I +    L    KG+K+R + +  ++ +  L
Sbjct: 155 F------IIRFMAATGARVSEVIQFQAEDIRNGYKDL--YSKGNKVRRIYIPKALHQDAL 206

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFA 270
            + +             +F    GK + P   +  ++ L    G+ P     H+ RH FA
Sbjct: 207 RWLEASKIQSG-----DIFLNRFGKRITPAGIRGQLKVLALNYGINPDVVYPHSFRHRFA 261

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
              +   GD+  +  +LGH  + TT+IY   +S    D + ++ D
Sbjct: 262 KSFIEKCGDISLLSDLLGHRNIETTRIYLRRSSSEQYDIINKVVD 306


>gi|254426414|ref|ZP_05040130.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus
           sp. PCC 7335]
 gi|196187828|gb|EDX82794.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus
           sp. PCC 7335]
          Length = 339

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 115/270 (42%), Gaps = 26/270 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +W+     +R +   T ++Y    R F ++  F          + +   +  +  +  + 
Sbjct: 34  DWVDEFLGDREIRPNTKKAYTRQLRGFQVWCEFKH-----WGDVGEADVSRYKEHLKNKP 88

Query: 80  TQ--KIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           T+  KIG    S+ ++++ ++SF K+L  ++  T +  LN+  +  + +  + +      
Sbjct: 89  TKAGKIGLSPASVNQAIATLQSFFKWLATKRYITYNPTLNVEKVPAAPTETKDIEVAAVR 148

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGK 193
            L + +      E   +  R++AI  LL   GLR +E   L   NI D   Q+    + K
Sbjct: 149 QLAEGLEYRGQREQ--LSTRDTAIFELLK-HGLRATEVSKL---NIGDYNGQAVQVSKAK 202

Query: 194 GDKIRIVPLLPSVRKAILEYYDLC---PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
                 VPL P+ R+A+  Y   C    FD +     PLFR +        +    I ++
Sbjct: 203 WRSDGTVPLAPNARQALDSYLGWCVRKGFDTSSG--EPLFRSLSRNGYGKRLGYWGIYEM 260

Query: 251 RRYLGLPLSTT----AHTLRHSFATHLLSN 276
            + LG+   +T     H LRH+F T L+ N
Sbjct: 261 VKDLGVIAESTENVHPHRLRHTFGTQLVLN 290


>gi|299142941|ref|ZP_07036067.1| site-specific recombinase, phage integrase family [Prevotella oris
           C735]
 gi|298575557|gb|EFI47437.1| site-specific recombinase, phage integrase family [Prevotella oris
           C735]
          Length = 308

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 19/153 (12%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRI----------QGKGDKIRIVPLLPSVRKA 209
           +Y+    GLRI E   L   +I  D  T+ +          +G+     +V   P  + +
Sbjct: 133 IYISLTTGLRIGEICGLMWADINTDTGTITVSRTIERIYIVEGEHKHTELVINTPKTKNS 192

Query: 210 ILEY-------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
             E          + P    +N+   +      KP  P  ++ Y  +L ++L +P     
Sbjct: 193 CREIPMNKELLAMVKPLKKVVNVNFYVLTN-EEKPTEPRTYRNYYHRLMKHLDIPW-LKY 250

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           H LRHSFAT  + +  D +++  +LGH  ++TT
Sbjct: 251 HGLRHSFATRCIESNCDYKTVSVLLGHANITTT 283


>gi|260642076|ref|ZP_05414491.2| site-specific recombinase, phage integrase family [Bacteroides
           finegoldii DSM 17565]
 gi|260623620|gb|EEX46491.1| site-specific recombinase, phage integrase family [Bacteroides
           finegoldii DSM 17565]
          Length = 420

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 14/147 (9%)

Query: 162 LLYGC--GLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            L+ C  GLR+ +  SLT   I+   D  TL ++ K +K + +  +P  ++AI      C
Sbjct: 269 FLFSCFTGLRLGDVRSLTWGKIVKAPDGKTLFVRTKMEKTQKIVNVPLSKEAID-----C 323

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
             +   N + P+F      P      +R I +  +   +    T H  RH++AT LL+ G
Sbjct: 324 -LNPKENNEEPIFM----LPAGTSNIERNIEKWMQDAKITKHITYHCSRHTYATMLLTLG 378

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSK 304
            D+ +   +LGH  ++TT IY  +  K
Sbjct: 379 ADIYTTSKLLGHSNVNTTSIYAKIVDK 405


>gi|196044897|ref|ZP_03112131.1| phage integrase family protein [Bacillus cereus 03BB108]
 gi|196024385|gb|EDX63058.1| phage integrase family protein [Bacillus cereus 03BB108]
          Length = 372

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 15/165 (9%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRI------QGKGDKIRIVPLLP 204
           AR+  +  LL   GLR  E + L  ++    + +   L +      +G G K R VPLL 
Sbjct: 173 ARDYTVFRLLELTGLRSFEIVMLDVKDCRFDLGENGKLHVRYGKGSKGSGYKRRWVPLLD 232

Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-- 260
           +    +L++Y  ++ P     N   PLF    G  L+    +  +R+ ++ LG       
Sbjct: 233 NA-DILLKWYLENIRPLFSKQN-HGPLFYAESGNRLSRDSARSALRRRQKNLGFSEEEIF 290

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           + H LRH+FAT     G DL +++ +LGH  ++TT  Y   +S +
Sbjct: 291 SPHQLRHAFATRQTETGVDLLTLKELLGHVEVATTFNYVKPSSDH 335


>gi|120435029|ref|YP_860715.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|117577179|emb|CAL65648.1| phage integrase family protein [Gramella forsetii KT0803]
          Length = 412

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 10/103 (9%)

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +P+LP + K I+E Y         ++ LP+   +  + +N      YI+++    G+  +
Sbjct: 302 IPILP-IAKTIIEKYKDNELLKEKDLVLPV---LSNQKMNA-----YIKEIANLAGISKN 352

Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T H  RH+FAT + L+NG  + S+  +LGH  L TTQ Y  +
Sbjct: 353 LTFHLARHTFATTVTLTNGVPIESVSKMLGHTNLKTTQHYAKI 395


>gi|138557|sp|P06723|VINT_BP186 RecName: Full=Integrase
 gi|3337277|gb|AAC34175.1| Int [Enterobacteria phage 186]
          Length = 336

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 66/308 (21%), Positives = 113/308 (36%), Gaps = 42/308 (13%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECD--------TRQFLIFLAFYTEEKIT 59
           E ++FE    +  W +  E  R L +L    Y            RQ  +  AF    +  
Sbjct: 34  EALAFEQYTVQNPWQEEKEDRRTLKELVDSWYSAHGITLKDGLKRQLAMHHAFECMGEPL 93

Query: 60  IQTIRQLSYTEIRA------FISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESN 112
            +      ++  R       +    R +++  R+L   L+  ++    L +  +   E+ 
Sbjct: 94  ARDFDAQMFSRYREKRLKGEYARSNRVKEVSPRTLNLELAYFRAVFNELNRLGEWKGENP 153

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           + NMR  +        L   Q   L+     H   + +        ++ +    G R SE
Sbjct: 154 LKNMRPFRTEEMEMTWLTHDQISQLLGECNRHDHPDLE-------TVVRICLATGARWSE 206

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
           A SL    +   + T     KG K R VP+         E Y+  P D    +    +  
Sbjct: 207 AESLRKSQLAKYKITY-TNTKGRKNRTVPISK-------ELYESLPDDKKGRLFSDCY-- 256

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                   G F+  +   R  + LP     H LRH+FA+H + NGG++  +Q +LGH  +
Sbjct: 257 --------GAFRSALE--RTGIELPAGQLTHVLRHTFASHFMMNGGNILVLQRVLGHTDI 306

Query: 293 STTQIYTN 300
             T  Y +
Sbjct: 307 KMTMRYAH 314


>gi|313885888|ref|ZP_07819628.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924643|gb|EFR35412.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 414

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 14/159 (8%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            ++ C  GL   +  +L  ++I  +D +  +  + +  K+    LL  V K+I+  Y+  
Sbjct: 250 FVFSCFTGLAYIDVANLKSEHIVTLDGKEWIMTRRQKTKVESNVLLLEVPKSIIAKYEGQ 309

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
               ++     LF  +  + +N      Y++++    G+  + T H  RH+FAT  LS G
Sbjct: 310 TAREDM-----LFPILSNQKMNS-----YLKEIADICGIKKNLTFHLARHTFATLCLSKG 359

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + S+  +LGH  + TTQIY  + +K     M +  D+
Sbjct: 360 VPMESVSKMLGHTNIRTTQIYARITNKKIEHDMEQFADK 398


>gi|288927218|ref|ZP_06421085.1| integrase [Prevotella buccae D17]
 gi|288336012|gb|EFC74426.1| integrase [Prevotella buccae D17]
          Length = 116

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%)

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           Y++++    G+    T H  RH+FAT  LS G  + S+  +LGH  + TTQIY  + +K
Sbjct: 33  YLKEIADICGIKKDLTFHMARHTFATMSLSKGVSMESVSKMLGHTNIKTTQIYARITNK 91


>gi|282859387|ref|ZP_06268495.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282587872|gb|EFB93069.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 431

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 106/261 (40%), Gaps = 35/261 (13%)

Query: 53  YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
           Y  E I +Q +  +   ++  + +K +  K+   +    L+ + S LK L KR I     
Sbjct: 192 YHVEDIPVQKVDTVLIKDLEDYFAKEKRFKLNTSA--GYLTMLASLLKDLHKRHIIDTYP 249

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRI 170
            +N  +++     PR +  ++   +          E K       +    L+ C  GL  
Sbjct: 250 FIN-HSIRWEVGTPRYITREEVGRIA------ALGEDKLQGYEKVSRDMFLFSCLTGLSY 302

Query: 171 SEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           ++   LT Q+I  +     I+    K   +  +PLLP     I  Y  +           
Sbjct: 303 TDVYHLTEQHIFHEAGMTWIRKPRMKTGNVCHIPLLPEAATIIERYRGIHT--------- 353

Query: 228 PLFRGIRGKPLN------PGV--FQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGG 278
              R  R +P        PG      +++++ R  G+  + T H  RH+FA+ + LS G 
Sbjct: 354 ---RAFRHEPPKGYLLPIPGCDTVNIHLKKIARLCGIQKTLTYHMARHTFASQMTLSEGV 410

Query: 279 DLRSIQSILGHFRLSTTQIYT 299
            + S+  +LGH ++ TTQ+Y 
Sbjct: 411 SIESVSKMLGHSQIKTTQVYA 431


>gi|282877654|ref|ZP_06286469.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281300226|gb|EFA92580.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 447

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 28/187 (14%)

Query: 148 ETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI---VPL 202
           E +W + R    L++ + C  GL IS+  +L  +NI+ ++  L I+G+  K +    V +
Sbjct: 278 EIEWENYRFVRDLFV-FSCFSGLAISDVRNLREENIVLEEGKLCIKGRRMKTKTPYRVQV 336

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL----NPGVFQRYIRQLRRYLGLPL 258
           LP     +  Y                 RGIR   +       +    +  ++R +G+  
Sbjct: 337 LPPALTIMNRY-----------------RGIRAGFVFDVPTTDIVLNGMHYIQRNIGMET 379

Query: 259 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
             T H  RH+FA+ + LS G  + ++  +LGH  L TTQ+Y  V+S+     M  I  + 
Sbjct: 380 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHRDMQAIQQRI 439

Query: 318 HPSITQK 324
             + T K
Sbjct: 440 QDTFTLK 446


>gi|317481411|ref|ZP_07940478.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902396|gb|EFV24283.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 334

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 17/159 (10%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI-RIVPLLPS---VRKAILEY 213
            IL LLY  G+R+SEAL +  +++  D   + ++   ++  R+VP+  S   V K  +EY
Sbjct: 143 VILRLLYSTGMRVSEALYMRNEDVNLDSGYIHLRKTKNRCERLVPIGESMVIVLKQYIEY 202

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-----STTAHTLRHS 268
            +  P +   +     F  + G          +  +L +   +P          H LRH+
Sbjct: 203 RNRMPIEKISHPNHLFFTKLDGTSFRVCTLYVFFHKLLKICNIPYIGNRQGPRIHDLRHT 262

Query: 269 FATHLL----SNGGDLRS----IQSILGHFRLSTTQIYT 299
           FA H L     NG DL +    + + LGH  LS+T+ Y 
Sbjct: 263 FAVHSLVQMGHNGMDLYTGLPILSACLGHRSLSSTEKYV 301


>gi|299141755|ref|ZP_07034890.1| integrase [Prevotella oris C735]
 gi|298576606|gb|EFI48477.1| integrase [Prevotella oris C735]
          Length = 422

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 75/162 (46%), Gaps = 26/162 (16%)

Query: 167 GLRISEALSLTPQNIM---DDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY--DLCPFD 220
           GL   +   L P++I+   D  + +RI+  K D   I+PLLP + K IL  Y  D    D
Sbjct: 257 GLARVDMQRLKPKHIIYNADGTAEIRIKRQKTDVEAIIPLLP-IAKQILSLYIKDKKADD 315

Query: 221 L---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSN 276
           L   NL I+   F  +     N G   R          +  S T H  RH+F+T + LSN
Sbjct: 316 LIFPNLTIRKASFACV-----NIGQICR----------IDKSLTFHMARHTFSTTICLSN 360

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           G  + ++  +LGH  + TTQIY  +      + M  + D+ H
Sbjct: 361 GISMETLSKMLGHSNIGTTQIYGKITDHKIQEDMTALTDREH 402


>gi|298245094|ref|ZP_06968900.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297552575|gb|EFH86440.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 396

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 85/200 (42%), Gaps = 27/200 (13%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R L  +QA T + N   +  +E + I     A+  L     +RI EALSL    +  ++ 
Sbjct: 186 RILTAEQAQTFI-NAAQNALNEGRQI----GAVTLLFMTTAIRIGEALSLHWSEVNFEKK 240

Query: 187 TLRIQGKGDKIRIVPLL--------PSVRKAILEYYDLCPFDLNLNIQLP---------- 228
            +RI+      R  P           SVR+ +L    L     +   Q+           
Sbjct: 241 EIRIENTLKYDRENPGFYETGPKSKSSVRRILLSRLALETLSAHRINQVEQRLQASEWED 300

Query: 229 ---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
              +F   +G  +     +  +R   + LGLP     H LRH+ +T L+  G  ++++Q 
Sbjct: 301 NNLVFTNPKGGHMWDTTIRYQLRSFLKGLGLPEDLRPHELRHNVSTALIEAGVSIKTVQE 360

Query: 286 ILGHFRLSTT-QIYTNVNSK 304
           +LGH ++STT  IY +V  K
Sbjct: 361 MLGHSKISTTMDIYGHVTPK 380


>gi|254520658|ref|ZP_05132714.1| phage integrase [Clostridium sp. 7_2_43FAA]
 gi|226914407|gb|EEH99608.1| phage integrase [Clostridium sp. 7_2_43FAA]
          Length = 400

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 77/178 (43%), Gaps = 29/178 (16%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-----------QGKGDKIRIVP 201
           D+R+  I  L  G GLR+ E L+L   +I    + +++           +    K +I+ 
Sbjct: 207 DSRDRCIFNLALGSGLRLGELLALKWSDIDFSSNEVKVSKSVKRVKCFDENTNTKTKIIE 266

Query: 202 LLP----SVRKAILEYYDLCPFDLNLNI--QLPLFRG---IRGKPLNPGVFQRYI--RQL 250
            LP    S RK  L    +     + NI  Q  L  G   I    + P V   YI  R L
Sbjct: 267 QLPKTRYSERKIPLPKATINELKRHKNIILQEKLMAGDIYIDNNLVFPNVLGGYIDARNL 326

Query: 251 -RRYLGLPLSTTA-----HTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNV 301
            +RY  +           H LRH++AT L  NG  L+ IQ +LGH  +  T  IYT+V
Sbjct: 327 TKRYKSILNKANIPYRKFHALRHTYATRLFENGVSLKVIQVLLGHSSMDITANIYTHV 384


>gi|169830694|ref|YP_001716676.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637538|gb|ACA59044.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 390

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 121/294 (41%), Gaps = 53/294 (18%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RG++  T+++Y CD R F  FL     E   +  +R+++   +  ++   R + +   ++
Sbjct: 18  RGMAAGTVEAYRCDFRDFSRFL-----ESQGVGEVREITTAVVNTYLVGLRKRGLSLSTV 72

Query: 89  KRSLSGIKSFLKYLKK---------RKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            R  + + S L +  +         RK+  ++    +RN+  S+   R            
Sbjct: 73  HRRKNALSSLLGFCVQQGWVDNNPLRKVILQTKPRTVRNVVLSDMAVR------------ 120

Query: 140 NVLLHTSHETKWIDARN-SAILYLLYGCGLRISEALSLTPQNI---------MDDQSTLR 189
              L +    + +D    +AI  LL   GLR SE +S    ++          + ++T R
Sbjct: 121 -TFLQSDVTYRSVDGLTVTAIKMLLVFTGLRCSEIVSADWAHVNLNSGLLTVFNSKNTAR 179

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
                 K R +PL  +V +A+    +  P+      Q PL +   G  L     +  + +
Sbjct: 180 KGLPEGKDRDIPLCQTVIQAL----NALPYR-----QGPLLQTRGGLRLGVDALREIVAR 230

Query: 250 LRR-----YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           L +     Y   PL  T H  RH+ A+ L+S G     + ++LGH   + TQ Y
Sbjct: 231 LSQASRLEYDHRPL--TPHCFRHNLASQLVSRGYSEADVATLLGHKPGTVTQAY 282


>gi|149923694|ref|ZP_01912089.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149815440|gb|EDM74979.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 316

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 59/115 (51%), Gaps = 15/115 (13%)

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG---IRGKPLNPGVFQRYI-- 247
           K DKIR VP+  +V +A+  +        +L   L  +R      GK ++P  +QRY   
Sbjct: 175 KHDKIRRVPMTDAVAQALSAHR-------HLRGPLVFYRDGGYAAGKVMSP-RYQRYWLD 226

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           + LRR   LP     HTLRH+F +HL   G   R+I  + GH  L TTQ Y +++
Sbjct: 227 KALRR-ANLP-DLGPHTLRHTFCSHLAMRGAPARAIMELAGHRDLLTTQGYMHLS 279


>gi|58616534|ref|YP_195663.1| putative integrase [Azoarcus sp. EbN1]
 gi|56315996|emb|CAI10639.1| putative integrase [Aromatoleum aromaticum EbN1]
          Length = 294

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 92/200 (46%), Gaps = 18/200 (9%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTE---EKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +R LS  T+ +Y      F++FL F      +      +  ++   I AF++    Q+  
Sbjct: 26  QRALSPQTIAAYR---DAFVLFLEFAQSRLGKSSAAIALADMTPELITAFLNHLEQQRHN 82

Query: 85  D-RSLKRSLSGIKSFLKYLKKRKITTESNI---LNMRNLKKSNSLPRALNEKQALTLVDN 140
             RS    L+ ++SFLK+  +R +++   +   L +   +    +   L+ ++ L ++D 
Sbjct: 83  CVRSRNARLAALRSFLKFAGRRDVSSLQVVERGLGIPAKRFERPMFGYLSREEMLAVID- 141

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ--STLRIQGKGDKIR 198
                + +  WI  R+  +  +LY  G R+SE   +   +++ ++  + + + GKG K R
Sbjct: 142 -----APDKTWIGQRDHVLFLMLYNTGARVSEITGVKVGDVVLEERAACVHLHGKGRKQR 196

Query: 199 IVPLLPSVRKAILEYYDLCP 218
            VPL  S  KA+  +    P
Sbjct: 197 SVPLWRSTVKAVRAWLKQNP 216


>gi|308232201|ref|ZP_07415262.2| integrase [Mycobacterium tuberculosis SUMu001]
 gi|308374648|ref|ZP_07436853.2| integrase [Mycobacterium tuberculosis SUMu006]
 gi|308375530|ref|ZP_07444217.2| integrase [Mycobacterium tuberculosis SUMu007]
 gi|308377076|ref|ZP_07441079.2| integrase [Mycobacterium tuberculosis SUMu008]
 gi|308378046|ref|ZP_07481362.2| integrase [Mycobacterium tuberculosis SUMu009]
 gi|308379269|ref|ZP_07485701.2| integrase [Mycobacterium tuberculosis SUMu010]
 gi|308380428|ref|ZP_07489920.2| integrase [Mycobacterium tuberculosis SUMu011]
 gi|308214699|gb|EFO74098.1| integrase [Mycobacterium tuberculosis SUMu001]
 gi|308341194|gb|EFP30045.1| integrase [Mycobacterium tuberculosis SUMu006]
 gi|308346043|gb|EFP34894.1| integrase [Mycobacterium tuberculosis SUMu007]
 gi|308349004|gb|EFP37855.1| integrase [Mycobacterium tuberculosis SUMu008]
 gi|308353729|gb|EFP42580.1| integrase [Mycobacterium tuberculosis SUMu009]
 gi|308357572|gb|EFP46423.1| integrase [Mycobacterium tuberculosis SUMu010]
 gi|308361515|gb|EFP50366.1| integrase [Mycobacterium tuberculosis SUMu011]
          Length = 295

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 74/178 (41%), Gaps = 19/178 (10%)

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           ++SLP+    KQ      + +   +      D R   ++ L    GLR +EA      ++
Sbjct: 122 ADSLPKVRCPKQPPRPAGDDVWQAALAKA--DRRIELMIRLAGEAGLRRAEAAQAHTGDL 179

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
           MD    L + GKG K RIVP        I +Y      D        LF    G  L   
Sbjct: 180 MDG-GLLLVHGKGGKRRIVP--------ISDYLAALIRDTPHGY---LFPNGTGGHLTAE 227

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
              + + +      LP   T HTLRH +AT       +LR++Q +LGH  + TT+ YT
Sbjct: 228 HVGKLVSR-----ALPGDATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYT 280


>gi|223369866|gb|ACM88801.1| integrase [uncultured bacterium]
          Length = 163

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 28/41 (68%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + HTL HSFATHLL N  D+R  Q +LGH  +S T  YT+V
Sbjct: 122 SCHTLPHSFATHLLENAYDIRPGQDLLGHKNVSPTLFYTHV 162


>gi|150010411|ref|YP_001305154.1| transposase [Parabacteroides distasonis ATCC 8503]
 gi|149938835|gb|ABR45532.1| transposase [Parabacteroides distasonis ATCC 8503]
          Length = 411

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 22/153 (14%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDD----------QSTLRIQGKGDKIRIVPLLPSVRKA 209
            ++ C  GL  S+  SL  ++++ D          +  L  + K   I  +PLLP V  A
Sbjct: 250 FVFACFTGLAFSDVASLNNEHLVQDNLGDWWIRKGRVKLERRRKASSISNIPLLP-VPLA 308

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           ILE Y   P  +     LP+    +           Y++++  + G+  + T H  RH+F
Sbjct: 309 ILEKYREHPACIKKGCCLPVMCNQK--------MNSYLKEIADFCGIKKNLTTHVARHTF 360

Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T + L+N   L+ +  +LGH     TQ Y  V
Sbjct: 361 GTTVTLANNVPLQDVSVMLGHASTRMTQHYARV 393


>gi|295840963|dbj|BAJ06849.1| integron integrase intI [uncultured bacterium]
          Length = 418

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 103/234 (44%), Gaps = 56/234 (23%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +++   +  ++L+ I  F +++  ++I    NI  +R+ KK   LP  L++++   +++ 
Sbjct: 201 KQVSSSTQSQALNAIIYFYRHVLGKQIA--ENIEFIRS-KKPKRLPVVLSKEEVALVME- 256

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----QGKGDK 196
                    K ++   + +  LLYGCG+R+ E + L    ++D   T R     Q KG K
Sbjct: 257 ---------KMVNPTFNLMANLLYGCGMRLMECVRL---RVLDIDFTYRQILIRQAKGKK 304

Query: 197 IRIVP----LLPSVRKAILEYYDLCPFDLNL---NIQLP---------LFRGIRGKPLNP 240
            R+ P    L   +++ + +   +   DL     ++ LP           R +R + + P
Sbjct: 305 DRVAPMPDKLFTPLKEQVKQVETMHAEDLKQGYGSVYLPGTLSRKYRNAERELRWQYVFP 364

Query: 241 GV--------------------FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
            V                     QR+I++     G+    T HTLRH+FATHLL
Sbjct: 365 SVKLSVDPRSGEVRRHHINERGLQRHIKRAADMTGINKRVTCHTLRHTFATHLL 418


>gi|221642176|ref|YP_002533263.1| integrase/recombinase, phage integrase family protein [Bacillus
           cereus Q1]
 gi|221243111|gb|ACM15820.1| integrase/recombinase, phage integrase family protein [Bacillus
           cereus Q1]
          Length = 361

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 72/328 (21%), Positives = 138/328 (42%), Gaps = 51/328 (15%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLA----------FYTE-EKITIQTIRQLSYTE 70
           ++ +E++  LS  TL  Y  +  +F  ++             TE  ++ I+ +  L   E
Sbjct: 25  VEYIEMKAMLSPATLYGYITEFEKFFKWMIEKRIAVINGNVATEIHEVPIELLESLPLNE 84

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-L 129
           +  F    +++ I  +++ R+ S +KS  KYL ++      N    RN+     L +  +
Sbjct: 85  VNRFHMYLKSEGIEIKAINRTFSALKSLFKYLSQKTEDEYGNSYLSRNVMDKIELHKEKI 144

Query: 130 NEKQALTLVDNVLLHTSHETKWI-------------------------DARNSAILYLLY 164
           +       V N++ + + +  ++                           R+ A++ L+ 
Sbjct: 145 DAGARADDVANMIFNNNDDAAFLRFLANDYEFILKETSTRKYNYFLRDKERDIALISLIL 204

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL------CP 218
           G GLR+SE  SL+  ++   Q T+++  KG+K   +    S    + EY  +      CP
Sbjct: 205 GTGLRVSELASLSLSSVNFRQKTIKVIRKGNKKSSILATQSSLDDVQEYLKVRQERYGCP 264

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRYL-GLPLSTTAHTLRHSFATHLLSN 276
            +     ++      +GK     V  R I+ L  +Y        + H LRH++AT+    
Sbjct: 265 PEE----EIMFVTRYQGKYTQLSV--RAIQNLVDKYTSAFDEKRSPHKLRHTYATNHYKE 318

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             DL  ++  LGH  +  T IYTN+N++
Sbjct: 319 NKDLVLLRDQLGHTSVEVTSIYTNINNE 346


>gi|168705853|ref|ZP_02738130.1| resolvase [Gemmata obscuriglobus UQM 2246]
          Length = 73

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 5   TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 45


>gi|116670747|ref|YP_831680.1| phage integrase family protein [Arthrobacter sp. FB24]
 gi|116610856|gb|ABK03580.1| phage integrase family protein [Arthrobacter sp. FB24]
          Length = 368

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 76/175 (43%), Gaps = 14/175 (8%)

Query: 142 LLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG-DKIRI 199
           L+  S +  W  A R++ +L + Y  GLR +E   L   +   +    R    G  K+R 
Sbjct: 166 LIAASGKKGWQAAYRDAVMLKVAYSYGLRFNELRHLQTIDFAANPQARRFGKAGVCKVRF 225

Query: 200 ------VPLLPSVRKAILEYYDLCPFDLNLNIQ-----LPLFRGIRGKPLNPGVFQRYIR 248
                  P  P     + ++      D   N +     L LF   RG  +      R +R
Sbjct: 226 GKSRKGSPHKPRSVLTVFDWTAGVIEDWLANGRGTLDTLDLFPSERGGLICESTLLRRLR 285

Query: 249 QLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +    LGLP+     H+LR S+ATHLL +G D R +Q  +GH   STT IY  V+
Sbjct: 286 RYLNELGLPMDGLDLHSLRRSYATHLLEDGWDPRFVQHQMGHEHASTTGIYQFVS 340


>gi|37528605|ref|NP_931950.1| hypothetical protein plu4792 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36788044|emb|CAE17164.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 144

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%)

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LP     H LRH+FA+H + NGG++ ++Q ILGH  +  T +Y ++
Sbjct: 78  LPKGQATHVLRHTFASHFMMNGGNIIALQQILGHASIIQTMVYAHL 123


>gi|34762210|ref|ZP_00143217.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27888171|gb|EAA25230.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 348

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 72/152 (47%), Gaps = 8/152 (5%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY---- 213
           AI+ +L    +R +E  ++  ++I  +++ ++I  KG+K  I  +      AI +Y    
Sbjct: 184 AIMEVLISSAIRATELANIKIRDIDFEKNEIKIVRKGNKEGIAFMSTIAALAIKKYISER 243

Query: 214 --YDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
             Y+     +   +    ++  I G  +    F+R ++ +     +  +   H  R +FA
Sbjct: 244 GNYNTPYLWVVDGLMYKCYKNQILGSKIETEGFRRVLKSIATRAKVE-NVHPHRFRRTFA 302

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           T  L  G D+  IQ +LGH  ++TT IY NV+
Sbjct: 303 TMALKKGMDVEEIQQVLGHQNINTTMIYVNVD 334


>gi|307566140|ref|ZP_07628597.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345152|gb|EFN90532.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 419

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 28/187 (14%)

Query: 148 ETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI---VPL 202
           E +W + R    L++ + C  GL IS+  +L  +NI+ ++  L I+G+  K +    V +
Sbjct: 250 EIEWENYRFVRDLFV-FSCFSGLAISDVRNLREENIVLEEGKLCIKGRRMKTKTPYRVQV 308

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL----NPGVFQRYIRQLRRYLGLPL 258
           LP                  L I +  +RGIR   +       +    +  ++R +G+  
Sbjct: 309 LPPA----------------LTI-MNRYRGIRAGFVFDVPTTDIVLNGMHYIQRNIGMET 351

Query: 259 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
             T H  RH+FA+ + LS G  + ++  +LGH  L TTQ+Y  V+S+     M  I  + 
Sbjct: 352 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHRDMQAIQQRI 411

Query: 318 HPSITQK 324
             + T K
Sbjct: 412 QDTFTLK 418


>gi|300361712|ref|ZP_07057889.1| site-specific tyrosine recombinase XerS [Lactobacillus gasseri
           JV-V03]
 gi|300354331|gb|EFJ70202.1| site-specific tyrosine recombinase XerS [Lactobacillus gasseri
           JV-V03]
          Length = 356

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 8/155 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL----LPSVRKAI 210
           R+ AI+ L+ G G+R+SE +S+  +NI      L +  KG +   VP+    +P ++K  
Sbjct: 189 RDIAIIALILGTGIRVSECVSVNVRNINLKDEMLDVIRKGGQKDSVPIADWTIPYLKKYQ 248

Query: 211 LEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
               D    D  N+   L  + G + + +     ++ + +     G PL  T H LRH+ 
Sbjct: 249 EIRADRYHADRDNIAFFLTRWHG-KTRRMTANAVEKMVNKYSAAFGKPL--TPHKLRHTL 305

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           A+ L     D   +   LG    + T +YT+V+ K
Sbjct: 306 ASELYEVTKDQVLVAQQLGQKGTTATDLYTHVDQK 340


>gi|167553284|ref|ZP_02347034.1| integrase [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205322250|gb|EDZ10089.1| integrase [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
          Length = 342

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 66/308 (21%), Positives = 113/308 (36%), Gaps = 42/308 (13%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECD--------TRQFLIFLAFYTEEKIT 59
           E ++FE    +  W +  E  R L +L    Y            RQ  +  AF    +  
Sbjct: 34  EALAFEQHTVQNPWQEEKEDRRTLKELVDSWYRAHGITLKDGLKRQLAMHHAFECMGEPL 93

Query: 60  IQTIRQLSYTEIRA------FISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESN 112
            +      ++  R       +    R +++  R+L   L+  ++    L +  +   E+ 
Sbjct: 94  ARDFDAQMFSRYREKRLKGEYARSNRVKEVSPRTLNLELAYFRAVFNELNRLGEWKGENP 153

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           + NMR  +        L   Q   L+     H   + +        ++ +    G R SE
Sbjct: 154 LKNMRPFRTEEMEMAWLTHDQISQLLGECNRHDHPDLE-------TVVRICLATGARWSE 206

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
           A SL    +   + T     KG K R VP+         E Y+  P D    +    +  
Sbjct: 207 AESLKKSQLAKYKITY-TNTKGRKNRTVPISK-------ELYESLPDDKKGRLFSDCY-- 256

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                   G F+  +   R  + LP     H LRH+FA+H + NGG++  +Q +LGH  +
Sbjct: 257 --------GAFRSALE--RTGIELPAGQLTHVLRHTFASHFMMNGGNILVLQRVLGHTDI 306

Query: 293 STTQIYTN 300
             T  Y +
Sbjct: 307 KMTMRYAH 314


>gi|154490810|ref|ZP_02030751.1| hypothetical protein PARMER_00727 [Parabacteroides merdae ATCC
           43184]
 gi|154088558|gb|EDN87602.1| hypothetical protein PARMER_00727 [Parabacteroides merdae ATCC
           43184]
          Length = 333

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 20/147 (13%)

Query: 163 LYGC--GLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           L+ C  GLRIS+ L+L  +N+    D    +R++ +  K +   LLP   +A    Y LC
Sbjct: 190 LFSCLTGLRISDILNLKWENLCTAPDLGHCIRLRTQ--KTQTEALLPISYEA----YALC 243

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
                  +   L R + G PL   +         +  G+    T H  RH++AT  ++ G
Sbjct: 244 GEPGTGKVFKELRRCMTGYPLKAWI---------KKAGIQKHITFHCFRHTYATLQIAAG 294

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSK 304
            D+ ++  +L H  ++TTQIY  + S+
Sbjct: 295 TDIFTVSKMLTHKNVATTQIYAELVSE 321


>gi|15964806|ref|NP_385159.1| putative integrase protein [Sinorhizobium meliloti 1021]
 gi|15073984|emb|CAC45625.1| Putative integrase [Sinorhizobium meliloti 1021]
          Length = 310

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 18/158 (11%)

Query: 152 IDARNSAILYL---LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
           I +R+   LYL   L   G R+ EA++L   +I + ++T  +   G + R VPL    + 
Sbjct: 154 IASRSELYLYLSIFLVDTGARLGEAIALKWNDIHEGRATFWVTKSG-RSRTVPLTVRAKD 212

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           A+    D  P   +  I    +R +     ++ G            LG       H LRH
Sbjct: 213 ALKRVADRSPGPFS-RIDQQKYRAVWNAAKVDAG------------LGNEDDLVPHILRH 259

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           + A+ L+  G DLR +Q  LGH  L  T  Y ++ S +
Sbjct: 260 TCASRLVRGGIDLRRVQMWLGHQTLEMTMRYAHLASHD 297


>gi|116662305|ref|YP_829359.1| phage integrase family protein [Arthrobacter sp. FB24]
 gi|116613069|gb|ABK05778.1| phage integrase family protein [Arthrobacter sp. FB24]
          Length = 368

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 76/175 (43%), Gaps = 14/175 (8%)

Query: 142 LLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG-DKIRI 199
           L+  S +  W  A R++ +L + Y  GLR +E   L   +   +    R    G  K+R 
Sbjct: 166 LIAASGKKGWQAAYRDAVMLKVAYSYGLRFNELRHLQTIDFAANPQARRFGKAGVCKVRF 225

Query: 200 ------VPLLPSVRKAILEYYDLCPFDLNLNIQ-----LPLFRGIRGKPLNPGVFQRYIR 248
                  P  P     + ++      D   N +     L LF   RG  +      R +R
Sbjct: 226 GKSRKGSPHKPRSVLTVFDWTAGVIEDWLANGRGTLDTLDLFPSERGGLICESTLLRRLR 285

Query: 249 QLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +    LGLP+     H+LR S+ATHLL +G D R +Q  +GH   STT IY  V+
Sbjct: 286 RYLNELGLPMDGLDLHSLRRSYATHLLEDGWDPRFVQHQMGHEHASTTGIYQFVS 340


>gi|330752707|emb|CBL88171.1| putative transposase [uncultured Leeuwenhoekiella sp.]
          Length = 417

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 11/110 (10%)

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K D+   +PLL      IL+ YD    + +  + LP+F   +          +Y++++  
Sbjct: 289 KNDEAVKIPLLDKAL-YILKKYDQGTENKSEKL-LPVFSNQK--------INKYLKEVAA 338

Query: 253 YLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            L +    T H  RH+FAT + LSNG  + ++  +LGH +LSTTQIY  V
Sbjct: 339 ILKINKKLTFHAARHTFATTVTLSNGVPIETVSKLLGHTKLSTTQIYARV 388


>gi|322836802|ref|YP_004210716.1| integrase [Acidobacterium sp. MP5ACTX9]
 gi|321165889|gb|ADW71589.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 317

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 72/153 (47%), Gaps = 12/153 (7%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVRKAI 210
           D R+ A+L LL GCGLR +E  SLT  +   D   + + + GK   IR VP +PS  K  
Sbjct: 146 DKRDYAVLALLLGCGLRRAELTSLTLGHQQRDGHWAIVNLFGKCGHIRTVP-VPSWVKVA 204

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQL--RRYLGLPLSTTA-HTL 265
           L+ + +        I    FR +   G    P + ++ +  +  RR     +   A H L
Sbjct: 205 LDRWVIAASISEGAI----FRRVSRTGTVWGPRISEKLVWWIVRRRAETAGIEKLAPHDL 260

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           R + A    + GG+L  IQ +LGH    TT+ Y
Sbjct: 261 RRTCARLCHAAGGELEQIQFLLGHRSAETTERY 293


>gi|187932918|ref|YP_001886980.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium botulinum B str. Eklund 17B]
 gi|187721071|gb|ACD22292.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium botulinum B str. Eklund 17B]
          Length = 398

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 76/181 (41%), Gaps = 37/181 (20%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG--------------KGDKIRIVPLLPS 205
           L L Y CGLR+ EA ++T  ++      L I                K D  RI+ L  +
Sbjct: 203 LQLAYRCGLRLGEAFAITWDDVDLKNQKLDINKQVQYKNKQWYFTPPKYDSYRIIDLDNT 262

Query: 206 V-----------RKAILEYYDL-CPFDLNLNIQLPLFRGIR---------GKPLNPGVFQ 244
           +           RK  + Y +L     +N   Q+    G           G  + P V Q
Sbjct: 263 IIDILKKYKQQQRKDKIYYGELYTELKINDKKQIKETDGTEIHLINIRENGTYIQPRVMQ 322

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
                +   LG+      H+LRH+ AT LLS+G +++++Q  LGH +L  T  +YT+V  
Sbjct: 323 HCFHIIHHKLGIK-ELDYHSLRHTHATMLLSSGANIKAVQERLGHKKLDMTLDVYTHVTD 381

Query: 304 K 304
           +
Sbjct: 382 E 382


>gi|58698751|ref|ZP_00373635.1| tyrosine recombinase XerC, putative [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58534724|gb|EAL58839.1| tyrosine recombinase XerC, putative [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 261

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 85/176 (48%), Gaps = 21/176 (11%)

Query: 16  KERQNWLQNLEI---------ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           K+ QN  +NL I         ER  ++ TL+SY  D  QF  FL    E   T+  + + 
Sbjct: 4   KQSQNKKENLYITYYIDALASERFAAQNTLESYRSDLHQFEEFL---LESGTTLVGVNK- 59

Query: 67  SYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKIT----TESNILNMRNLKK 121
             T I+ ++    TQK     S+ R +S +K+F K L    I       +N   ++N K 
Sbjct: 60  --TNIKDYVKSLCTQKKYKSSSISRKISAMKNFYKCLFNDGIIDFNPAPANDAELKNPKV 117

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSL 176
           S  LP+ L+ ++   L+D V    S   K I + R  AIL +LY  G+R+SE +S+
Sbjct: 118 SRPLPKYLSVEEIFLLMDTVRKSASESNKEISSKRLCAILDILYSSGMRVSELISM 173


>gi|219669966|ref|YP_002460401.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
 gi|219540226|gb|ACL21965.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
          Length = 310

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 37/159 (23%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----------GKGDKIRIVPLLPSVRK 208
            + L+   GLR SEAL+LTP++   +   ++I           G G+   +     S ++
Sbjct: 141 FILLVAKTGLRFSEALALTPKDFDFECQKVKISKTWNYKNAEGGFGETKNL-----SSKR 195

Query: 209 AILEYYDLCPFDLNLNIQL-----------PLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
            I         D+ LN Q+           P+F  ++G+  N  V  R ++ L +  G+P
Sbjct: 196 TI-------QIDIQLNTQIERLSKDLADDEPIF--VQGRVFNSTVNNR-LKVLCKKAGVP 245

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           +  +AH LRH+ A+ L+  G  + SI   LGH  +STTQ
Sbjct: 246 I-ISAHCLRHTHASLLIFAGVSIASIAKRLGHSSISTTQ 283


>gi|332652920|ref|ZP_08418665.1| phage integrase [Ruminococcaceae bacterium D16]
 gi|332518066|gb|EGJ47669.1| phage integrase [Ruminococcaceae bacterium D16]
          Length = 400

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-T 294
           KP+ P     +++ L +  GLP     H LRH+FATH L++G D +++  ILGH   S T
Sbjct: 298 KPVRPSAAYYWMKVLLKEAGLP-HIRFHDLRHTFATHALASGVDAKTLSGILGHTNASFT 356

Query: 295 TQIYTNV 301
              YT+V
Sbjct: 357 LDTYTHV 363


>gi|302670790|ref|YP_003830750.1| tyrosine recombinase XerC1 [Butyrivibrio proteoclasticus B316]
 gi|302395263|gb|ADL34168.1| tyrosine recombinase XerC1 [Butyrivibrio proteoclasticus B316]
          Length = 353

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 107/220 (48%), Gaps = 17/220 (7%)

Query: 89  KRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH-- 144
           KR +S ++S   Y  K +  +   + ++NM  L +   +    NE    TL+D V     
Sbjct: 117 KRKMSALRSMYSYFYKSEQISRNTAELINMPKLHEHEIIRLEPNE--VATLLDQVEAGEK 174

Query: 145 -TSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            T  + K+ +    R+ A+L LL G G+R+SE + +   +I  D + LRI  KG    +V
Sbjct: 175 LTKAQLKYHEKTKLRDVALLTLLLGTGIRVSECVGIDFDDIDFDTNGLRIHRKGGYNTVV 234

Query: 201 PLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
                VR+A+L Y     ++ P + + N    LF  ++ K ++    ++ +++  + +  
Sbjct: 235 YFPDEVREALLTYINQRKEIIPEEGSEN---ALFLSLQNKRISVRAVEKLVKKYAQNVTT 291

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
               T H LR +F T+L    GD+  +  +LGH  ++TT+
Sbjct: 292 LKKITPHKLRSTFGTNLYQESGDIYLVADVLGHKDVNTTR 331


>gi|295087166|emb|CBK68689.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 420

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 5/98 (5%)

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           P  +  I +   LC    N +  L +F G+     +     R ++      G+    T H
Sbjct: 309 PDYKPVIQQALQLCGIRPNDDEAL-VFEGL----TDASWISRPLKVWIEASGIKKHITFH 363

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             RHS+A+ LL NG D+ +I+S++GH  + TTQIYT++
Sbjct: 364 CGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHL 401


>gi|302346799|ref|YP_003815097.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302150507|gb|ADK96768.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 412

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 22/153 (14%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDL 216
            L+ C  GL  ++   LT ++I+ +     I+    K   I  +PLLP    AI+E Y  
Sbjct: 248 FLFSCYTGLSYTDVYHLTAEHIIHESDMDWIRKPRIKTGNICHIPLLPEA-SAIIERYR- 305

Query: 217 CPFDLNLNIQLPLFRGIRGK----PLNPGV--FQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
                   I    FR    K    P+ PG      +++++ R  G+  + T H  RH+FA
Sbjct: 306 -------GIHTRAFRHEPPKGYLLPI-PGCDTVNIHLKKIARLCGIQKTLTFHMARHTFA 357

Query: 271 THL-LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           + + LS G  + S+  +LGH ++ TTQ+Y   +
Sbjct: 358 SQMTLSEGVSIESVSKMLGHSQIKTTQVYAETS 390


>gi|270294597|ref|ZP_06200799.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270276064|gb|EFA21924.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 408

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 17/121 (14%)

Query: 203 LPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           L  + KAILE Y D  P   N  I LP+   I  + +N      Y++++    G+  + T
Sbjct: 295 LLDIPKAILEKYKDKLP---NGKI-LPV---ISNQKMND-----YLKEIAAICGIEKTLT 342

Query: 262 AHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIY---TNVNSKNGGDWMMEIYDQT 317
            H  RHS AT  LL+NG  + ++  ILGH  + TTQIY   TN+   N  + + +  D  
Sbjct: 343 YHVARHSCATSVLLANGVPIETVSKILGHTNIRTTQIYARITNLKVSNDMEMLAQKLDAA 402

Query: 318 H 318
           H
Sbjct: 403 H 403


>gi|265751258|ref|ZP_06087321.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
 gi|263238154|gb|EEZ23604.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
          Length = 405

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 26/153 (16%)

Query: 162 LLYGC--GLRISEALSLTPQNI---MDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD 215
            ++ C  GL  ++  +L P++I    + +  +RI+  K D    +PL P V K ILE Y+
Sbjct: 244 FIFSCMTGLAYADTRALHPRHIGKTSEGRRYIRIRRAKTDVEAFIPLHP-VAKQILELYN 302

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNP----GVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
                              GKP+ P     V    +  +   LG+  + + H  RHSF T
Sbjct: 303 TTD---------------EGKPVFPLPVRDVLWYEVHGMGVALGMRENLSYHMARHSFGT 347

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             L+ G  + SI  ++GH  + +TQ+Y  V  +
Sbjct: 348 LTLTAGIPIESIARMMGHTNIDSTQVYAQVTDR 380


>gi|254441008|ref|ZP_05054501.1| site-specific recombinase, phage integrase family [Octadecabacter
           antarcticus 307]
 gi|198251086|gb|EDY75401.1| site-specific recombinase, phage integrase family [Octadecabacter
           antarcticus 307]
          Length = 198

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 66/161 (40%), Gaps = 12/161 (7%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------GKGDKIRIVPLLPSVR 207
           RN  I  L    GLR  E   L  + ++D   TL           KG+  R +PL   ++
Sbjct: 30  RNQTIFLLSIKAGLRAKEIAKLRWEMVLDADGTLSAHLSLSNDASKGNSGRRIPLNKDLK 89

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             + E YD+            + R  R    +P           R LGL +  ++H+ R 
Sbjct: 90  AKLNELYDVRLKGKGFGAADHVIRTERSDRTSPQAIVNMFSGWYRDLGL-IGCSSHSGRR 148

Query: 268 SFATH----LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +F T+    + + GG LR +Q + GH  L TT+ Y   + K
Sbjct: 149 TFVTNAAQKITTVGGSLRDVQYLAGHSSLQTTERYIEYSEK 189


>gi|332827492|gb|EGK00238.1| hypothetical protein HMPREF9455_03377 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 448

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 12/118 (10%)

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           V LLP V K ++E Y L     N    +P F    G  +N     R ++++ +  G+   
Sbjct: 293 VKLLP-VAKKLIEQYRLVARS-NYIFPVPTF----GDSMN-----RCLQRIAKLCGITKR 341

Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            T H  RHSFAT + LS G  + ++  +LGH  ++TTQIY  + ++     M  + D+
Sbjct: 342 ITTHMARHSFATTVCLSKGVPIETVSQMLGHSCITTTQIYAKITNEKISKDMAALTDK 399


>gi|104774036|ref|YP_619016.1| integrase/recombinase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|103423117|emb|CAI97856.1| Integrase/recombinase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
          Length = 305

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 29/155 (18%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD------KIRIVPLLPSVRKAILE 212
           ++ L+   GLR SEAL LT ++I  +Q T+ +    D        +    + SVRK    
Sbjct: 138 MILLIAKTGLRFSEALGLTKEDIDLEQQTINVDKTWDYKSYTGSFKQTKNVSSVRK---- 193

Query: 213 YYDLCPFDLNLNIQL-----------PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
                P D  L +QL           P+F   + +  N  V   ++++    L +P+  +
Sbjct: 194 ----VPIDWKLAMQLNQVIQDLPNGEPIF--AQKRVFNSTV-NNFLKKHCEELNIPV-IS 245

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            H LRH+ A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 246 VHGLRHTHASLLLFAGVSIASVAKRLGHADMTTTQ 280


>gi|103485931|ref|YP_615492.1| phage integrase [Sphingopyxis alaskensis RB2256]
 gi|98976008|gb|ABF52159.1| phage integrase [Sphingopyxis alaskensis RB2256]
          Length = 515

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 132/306 (43%), Gaps = 34/306 (11%)

Query: 9   IVSFELLKERQ----NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           I S EL+ +       +L  L+  RG +  T++ Y  D R+    L   ++    +    
Sbjct: 215 IPSVELVSDDDPHMAAYLAWLKQHRGATDETIRRYRADIRRLAPMLGEPSQWDAAV---- 270

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS-- 122
                 +R    +R  +  G  SL  ++  I+S++++L  + I   + +  + ++++   
Sbjct: 271 ------LRRAFQQRSKETPGSASLLVTI--IRSYIRFLVVQGICRPALLHAIPSVQRYRL 322

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           ++LPR +N      ++           + ++ R+ AI+ LL   GLR  +   +   +I 
Sbjct: 323 STLPRHVNPATIEQIIG-----ACPTDRPVEVRDKAIILLLARLGLRAGDIRDMHLDDID 377

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC------PFDLNLNIQLPLFRGIRGK 236
                L ++GK  +   +PL   V  AIL+Y          P  L +  Q P FR  R  
Sbjct: 378 WRSGHLTVKGKTRRPDRLPLPQDVGDAILDYIATARPKTADPH-LFVRAQAP-FRSFRSS 435

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
               G+  R   +     G+P  T +H  RHS AT+LL  G  L S+ +IL H    TT 
Sbjct: 436 AEIAGIVAR-THERGGIEGVP--TGSHIFRHSLATNLLRAGAGLESVGTILRHSSPETTA 492

Query: 297 IYTNVN 302
           IY  V+
Sbjct: 493 IYAKVD 498


>gi|332346514|gb|AEE59847.1| putative site-specific recombinase [Escherichia coli UMNK88]
          Length = 229

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 157 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 200


>gi|301162189|emb|CBW21734.1| putative bacteriophage integrase [Bacteroides fragilis 638R]
          Length = 368

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 71/156 (45%), Gaps = 37/156 (23%)

Query: 163 LYGC--GLRISEALSLTPQN--IMDDQS-TLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           L+ C  GLRIS+ L+L  ++  I  DQ   LRI+ +  K +    LP   +A    Y+LC
Sbjct: 225 LFACLTGLRISDILNLQWEDFTIAPDQGYCLRIRTQ--KTQTEATLPISYEA----YELC 278

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY--------LGLPLSTTAHTLRHSF 269
                            G P    VF+   R +  Y         G+    T H  RHS+
Sbjct: 279 -----------------GTPGTGKVFKDLKRSMINYPLKSWLKKAGITKPITFHGFRHSY 321

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTN-VNSK 304
           A   +S G D+ ++  +L H  +STTQIY + VNSK
Sbjct: 322 AVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSK 357


>gi|291335907|gb|ADD95502.1| phage related integrase [uncultured phage MedDCM-OCT-S08-C41]
          Length = 282

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/228 (20%), Positives = 93/228 (40%), Gaps = 38/228 (16%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++ R +S + + L +  +RK+  + ++   +          ++++   +    N +    
Sbjct: 71  TINRCISSVSTVLHHCARRKLIAKPDVFERKKEAPPREFFYSIDQLGEMVKAANTIFR-- 128

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205
                +      IL+ ++  G+R  E L L   +I  + + + + + K +  R VP+   
Sbjct: 129 -----MPELGDIILFAVH-TGMRQGEVLRLVTSDIDFNFNVIHVHKTKNNTTRTVPINSQ 182

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY------IRQLRR---YLGL 256
           ++                    P+        ++  VF  Y      +RQLR+   Y+GL
Sbjct: 183 IK--------------------PMLERRVADAIDDHVFWEYQDKDTLLRQLRKVTAYIGL 222

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +   HTLRH+F T L   G  L  +  I+GH  + TT  Y  V+++
Sbjct: 223 DENYLFHTLRHTFCTILAGKGTPLHQVAEIMGHNDIKTTLRYAKVSAE 270


>gi|291535007|emb|CBL08119.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
          Length = 270

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 100/235 (42%), Gaps = 40/235 (17%)

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN-----------------------EK 132
           + F++YL  ++IT +  +L    L++ +  P  +N                       + 
Sbjct: 29  EKFVRYLNGKEITKDRTMLYREKLREEDLSPATINLYVIAVNRYLRYLECGQASIKTLKV 88

Query: 133 QALTLVDNVLLHTSHETKWIDARNSA------ILYLLYGCGLRISEALSLTPQNIMDDQS 186
           Q    V+N++    ++     A+ S       I+  L   G+R+SE   +T + +  +  
Sbjct: 89  QKKCSVENIISRKEYQELLNYAKRSGREKYYYIMRTLALTGIRVSELQYITVETL--ETG 146

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQR 245
            +++  KG KIR V  LP V   I E    C  +  N  I   +FRG  G P+N     +
Sbjct: 147 RVQVYNKG-KIRDV-YLPDV--LIRELKKFCREEKENDGI---IFRGRGGDPINRITVYK 199

Query: 246 YIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            I  L   +G+       H+ RH FA   +   G+L  +  +LGH  + TT+IYT
Sbjct: 200 MIAYLGDMVGIKKEKVHPHSFRHFFAISYMERYGNLAELADLLGHTSIETTRIYT 254


>gi|255009702|ref|ZP_05281828.1| putative transposase [Bacteroides fragilis 3_1_12]
 gi|313147488|ref|ZP_07809681.1| transposase [Bacteroides fragilis 3_1_12]
 gi|313136255|gb|EFR53615.1| transposase [Bacteroides fragilis 3_1_12]
          Length = 408

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 17/126 (13%)

Query: 203 LPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           L  + KAILE Y D  P   N  I LP+   I  + +N      Y++++    G+  + T
Sbjct: 295 LLDIPKAILEKYKDKLP---NGKI-LPV---ISNQKMND-----YLKEIAGICGIEKNLT 342

Query: 262 AHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIY---TNVNSKNGGDWMMEIYDQT 317
            H  RHS AT  LLSNG  + ++  ILGH  + TTQIY   T++   N  + + +  D T
Sbjct: 343 YHVARHSCATSVLLSNGVPIETVSKILGHTNIRTTQIYARITDLKVSNDMEMLAQKLDAT 402

Query: 318 HPSITQ 323
           H + ++
Sbjct: 403 HRTASR 408


>gi|228948202|ref|ZP_04110486.1| Integrase/recombinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228811560|gb|EEM57897.1| Integrase/recombinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 322

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 82/175 (46%), Gaps = 12/175 (6%)

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDK 196
           N+LL     T++I+ R++A + L+Y  G+R+     L  +++  +   LRI G   K  +
Sbjct: 140 NLLLSILDLTRFIELRDAASVLLMYQTGIRVGTLSQLEHKHVNLENKVLRIDGGIIKNHE 199

Query: 197 IRIVP---LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQ 249
              +P   +L  V  A+++  D+   +  +N          G+    P N  + +R  + 
Sbjct: 200 SIHLPFDDVLARVLGALMKQNDIIRKECRVNNNYLFITKNGGRIATSPTNNNITKRLSKH 259

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            R Y GL  +   H LR  FA +LL  G ++  I   LGH  L+ T  Y +++ +
Sbjct: 260 SRDY-GLK-NINPHALRRGFAKNLLKKGANIALISKALGHSDLAVTTRYLHLDKE 312


>gi|152984624|ref|YP_001346111.1| integrase [Pseudomonas aeruginosa PA7]
 gi|150959782|gb|ABR81807.1| integrase [Pseudomonas aeruginosa PA7]
          Length = 394

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 9/85 (10%)

Query: 237 PLNPG--VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           P   G   F+R +  +   L LP     H LRH+FA+H + NGGD+ ++Q +LGH  L  
Sbjct: 261 PFRSGYNTFRRAVEAV--GLDLPEGQLTHVLRHTFASHYMRNGGDIITLQRVLGHASLQM 318

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHP 319
           T  Y + +  +    M E+    HP
Sbjct: 319 TMRYAHFSPGH----MAEVV-HLHP 338


>gi|329963640|ref|ZP_08301114.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328528050|gb|EGF55031.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 379

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 15/140 (10%)

Query: 166 CGLRISEALSLTPQNIMDD----QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           CGLR  + ++L  ++I  D     S   +Q K  +   +PL P   K +       P   
Sbjct: 235 CGLRHCDIVALEWKDIHYDTNGNASINIVQQKTHEAISLPLSPEAVKYL-------PNRE 287

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
                  +F+G+     +  +  R+ +Q     G+    T H  RH+ AT +L+ G DL 
Sbjct: 288 KAQDTDKIFKGLISLGRSNEILDRWAKQA----GILKHVTFHVARHTHATMMLTLGADLY 343

Query: 282 SIQSILGHFRLSTTQIYTNV 301
           +I  +LGH  + TTQIY  +
Sbjct: 344 TISKLLGHTNIQTTQIYAKL 363


>gi|33323004|gb|AAQ07239.1|AF496546_1 integrase/recombinase [Lactobacillus delbrueckii subsp. lactis]
          Length = 127

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 5/83 (6%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K+   +P AL E +   L+D   L T      +  R+ A++ LLY  G+R+SEA++L   
Sbjct: 6   KREKRMPLALTEAEVGKLLDQPDLTTD-----LGIRDRALVELLYATGMRVSEAVNLQLA 60

Query: 180 NIMDDQSTLRIQGKGDKIRIVPL 202
           ++  D   +++ GKG+K R++P+
Sbjct: 61  DVHADLQLIKVLGKGNKERLIPV 83


>gi|332652921|ref|ZP_08418666.1| phage integrase [Ruminococcaceae bacterium D16]
 gi|332518067|gb|EGJ47670.1| phage integrase [Ruminococcaceae bacterium D16]
          Length = 540

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 69/159 (43%), Gaps = 34/159 (21%)

Query: 167 GLRISEALSLTPQNIMDDQSTL-------RIQGK--------GDKIRIVPLLPSVRKAIL 211
           GLR  E L+L   ++  D  TL        + GK           IR + L P+V +   
Sbjct: 218 GLRRGELLALQWSDLDLDTGTLSVTKQVYEVNGKMQLSVPKTKASIRKLVLPPAVVEVFR 277

Query: 212 EYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           EY        L P   NL++           PL PG   R +  +    G       H L
Sbjct: 278 EYRKTAKSRWLFPSPKNLDM-----------PLTPGSMLRRLHIILERAGCK-QIRFHDL 325

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
           RH+FAT  L NG D++++ ++LGH   +TT  IYT++ S
Sbjct: 326 RHTFATMALENGMDIKTLSAMLGHVSAATTLDIYTHITS 364


>gi|288800952|ref|ZP_06406409.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332413|gb|EFC70894.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 417

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 22/153 (14%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDL 216
            L+ C  GL  ++   LT ++I+ +     I+    K   I  +PLLP    AI+E Y  
Sbjct: 253 FLFSCYTGLSYTDVYHLTAEHIIHESGMNWIRKPRIKTGNICHIPLLPEA-SAIIERYR- 310

Query: 217 CPFDLNLNIQLPLFRGIRGK----PLNPGV--FQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
                   I    FR    K    P+ PG      +++++ R  G+  + T H  RH+FA
Sbjct: 311 -------GIHTRAFRHEPPKGYLLPI-PGCDTVNIHLKKIARLCGIQKTLTFHMARHTFA 362

Query: 271 THL-LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           + + LS G  + S+  +LGH ++ TTQ+Y   +
Sbjct: 363 SQMTLSEGVSIESVSKMLGHSQIKTTQVYAETS 395


>gi|302346774|ref|YP_003815072.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302150769|gb|ADK97030.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 406

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 27/153 (17%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDL 216
            ++ C  GL IS+  +L  +NI+ ++  L I+G+  K +    V +LP  +  +  Y   
Sbjct: 250 FVFSCFSGLAISDVRNLREENIVLEEGELCIKGRRMKTKTPYRVQVLPPAQTIMNRY--- 306

Query: 217 CPFDLNLNIQLPLFRGIRGKPL----NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                         RGIR   +       V    +  ++R +G+    T H  RH+FA+ 
Sbjct: 307 --------------RGIRAGFVFDVPTTDVILNGMHYIQRNIGMKTPLTFHMARHTFASL 352

Query: 273 L-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + LS G  + ++  +LGH  L TTQ+Y  V+S+
Sbjct: 353 ITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSE 385


>gi|329929034|ref|ZP_08282836.1| site-specific recombinase, phage integrase family [Paenibacillus
           sp. HGF5]
 gi|328937023|gb|EGG33452.1| site-specific recombinase, phage integrase family [Paenibacillus
           sp. HGF5]
          Length = 181

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 81/177 (45%), Gaps = 14/177 (7%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + + +++ +  + + L+  SH       RN  +       GLRI + L    +++M +  
Sbjct: 5   QPIRDQETIEAIKDFLMQQSH-------RNYMLFVFGINTGLRIQDMLKFKVKDVMGEYL 57

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            +  + K  K +I+ + P +++ I  Y  ++ P D    +  P  +G + KP+   +  +
Sbjct: 58  VM-TEMKTGKRKIMKIPPVLKREIKRYIANMNPED----VLFPSRQGGKNKPIKRDMAYK 112

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            ++   +  GL +    HTLR +F  H+     D+  +Q++L H   S T  Y  ++
Sbjct: 113 IMKAAAKEFGL-VDIGTHTLRKTFGYHMYQKKKDITLVQNLLNHSDRSITMRYIGMD 168


>gi|294782183|ref|ZP_06747509.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           1_1_41FAA]
 gi|294480824|gb|EFG28599.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           1_1_41FAA]
          Length = 360

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 91/203 (44%), Gaps = 27/203 (13%)

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
           K++ KYLK + +   +         K++   R + +++   L DN+  + +++   ID  
Sbjct: 162 KNYAKYLKTKTVEKGN---------KTSDRERVITQEELQVLWDNISNNETNKHGIIDM- 211

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK--IRIVPLLPSVRKAI-LE 212
              +L L Y  GLRISE L +  +++  ++    ++    K  IR VP+   +       
Sbjct: 212 ---VLILCY-TGLRISELLRVKRKDVYLNEYYFEVEKSKSKAGIRKVPIADKIVDLFRAR 267

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           Y+    F         L++ + G   +   F  + R L R LGL   +  H  RH+FA+ 
Sbjct: 268 YFSKDTF---------LWQRLDGLEYDYDSFDNHFRILFRDLGLSYHS-LHDTRHTFASL 317

Query: 273 LLSNGGDLRSIQSILGHFRLSTT 295
           L +N  D  +I  I+GH    TT
Sbjct: 318 LSNNVADKDAIIKIIGHSNYKTT 340


>gi|293374058|ref|ZP_06620397.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292631019|gb|EFF49658.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 418

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 10/135 (7%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G+R  +   L    +       R+     K + V  +P   +A    Y+LC        +
Sbjct: 274 GIRHCDIQKLKWSEVEQFNGGYRLNFTQQKTKGVEYMPISEQA----YNLC--GEQKEGE 327

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           L +F G+   P +P    R +++     G+    T H  RHS+AT  L+ G D+ ++  +
Sbjct: 328 LLVFAGL---P-DPSWINRPVKKWVEAAGISKHITFHCFRHSYATLQLAGGTDIYTVSKM 383

Query: 287 LGHFRLSTTQIYTNV 301
           LGH  + TTQ+Y  V
Sbjct: 384 LGHTNVRTTQVYAKV 398


>gi|260662071|ref|ZP_05862967.1| site-specific tyrosine recombinase XerS [Lactobacillus fermentum
           28-3-CHN]
 gi|260553454|gb|EEX26346.1| site-specific tyrosine recombinase XerS [Lactobacillus fermentum
           28-3-CHN]
          Length = 359

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 8/153 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A++ L+ G G+R+SE   +   ++     TL +  KG +   VP+ P     I  Y 
Sbjct: 189 RDIALVALILGTGIRVSETAGIDVNDLDLKGQTLEVTRKGGQRDAVPIAPWTMPYIQAYA 248

Query: 215 DL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
            +      P        L  + G + K ++    +R + +  R  G PL  T H LRH+ 
Sbjct: 249 TIRRQRYQPEKTERAFFLTHYHG-QTKRISVNGIERLVSKYSRAFGHPL--TPHKLRHTL 305

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           A+ L     D   +   LG    S T +YT+V+
Sbjct: 306 ASELYDVTKDQVLVAQQLGQKGTSATDLYTHVD 338


>gi|261377411|ref|YP_003208350.1| putative integrase [uncultured bacterium]
 gi|257735399|emb|CAZ72214.1| putative integrase [uncultured bacterium]
          Length = 312

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 18/159 (11%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMD-----DQSTLRIQGKG--DKIRIVPLLPSVR 207
           R+ A+L ++   GLR    +S+   +I D     D   L  QGKG  +K   V L   V 
Sbjct: 142 RDYAMLSVMVTTGLR---EISIVRADIGDIRTAGDAVALFYQGKGHEEKADYVKLAEPVE 198

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL--RRYLGLPLST---TA 262
           +A+  Y          + + PLF  I  +     +  R + ++   R + + L +   T 
Sbjct: 199 EAVRAYLKARG---GADPKAPLFSSIANRNNGERMTTRSVSRVAKERLIAVGLESDRLTG 255

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H++RH+ AT  L NGG +   + +LGH  ++TT IY++ 
Sbjct: 256 HSMRHTAATLNLLNGGTVEETRQLLGHTNINTTLIYSHA 294


>gi|255011911|ref|ZP_05284037.1| putative integrase [Bacteroides fragilis 3_1_12]
 gi|313149745|ref|ZP_07811938.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313138512|gb|EFR55872.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 327

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 107/253 (42%), Gaps = 29/253 (11%)

Query: 61  QTIRQLSYTEIRAFISKRR----TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           + IR ++  ++R +++  +      K+   +++R LS   SF  +L+      +S +  +
Sbjct: 86  KNIRHITTDDLRNYLNDYQQISGATKVTVDNIRRILS---SFFAWLEDEDYIVKSPVRRI 142

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             +K   ++          T  D  L       + I  R+ A++ LL   G+R+ E + L
Sbjct: 143 HKVKVGKTVKE--------TYSDEALEQMRDHCEGI--RDLALIDLLASTGMRVGELVKL 192

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
              +I  +     + GKGDK R V    +  K  L+ Y     D N  + + L       
Sbjct: 193 NRNDIDFENRECIVTGKGDKQRRV-YFDARTKIHLQRYLAGRIDDNSALFVSLL-----A 246

Query: 237 PLN----PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           P +     GV  R +R+L R L +P     H  R + AT  +  G  +  +Q +LGH  L
Sbjct: 247 PYDRLQISGVEIR-LRRLGRELNIP-KVHPHKFRRTLATMAIDKGMPIEQVQHLLGHQSL 304

Query: 293 STTQIYTNVNSKN 305
            TT  Y  VN  N
Sbjct: 305 DTTLQYAMVNQTN 317


>gi|237742699|ref|ZP_04573180.1| tyrosine recombinase xerC [Fusobacterium sp. 4_1_13]
 gi|229430347|gb|EEO40559.1| tyrosine recombinase xerC [Fusobacterium sp. 4_1_13]
          Length = 414

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 77/179 (43%), Gaps = 34/179 (18%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-----GKGDKIRIV-------------P 201
            YLL   GLR SE L +T  NI  ++ +L ++        +KI +V             P
Sbjct: 221 FYLLIFLGLRKSELLGITIDNINFEEKSLYLEQSLIWDSENKIYVVNREMKSPLAHRKFP 280

Query: 202 LLPSVRKAILEYYDLCPFD-------------LNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           L+P +   + E  D    D             LN N +  L     GK L        + 
Sbjct: 281 LIPILTDFLTERIDRIKEDKIFFGNTYGIDKKLNFNAEGYLCIDREGKILRKFKLNYELD 340

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV-NSKN 305
           ++ + + L    + H LRH+ AT + S G DL+ IQ  LGH  +STT  IY +  NSKN
Sbjct: 341 KILKKIELE-HLSIHELRHTCATLMYSEGVDLKKIQYWLGHSNISTTANIYAHYDNSKN 398


>gi|184155416|ref|YP_001843756.1| site-specific tyrosine recombinase XerS [Lactobacillus fermentum
           IFO 3956]
 gi|183226760|dbj|BAG27276.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
          Length = 359

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 8/153 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A++ L+ G G+R+SE   +   ++     TL +  KG +   VP+ P     I  Y 
Sbjct: 189 RDIALVALILGTGIRVSETAGVDVNDLDLKGQTLEVTRKGGQRDAVPIAPWTMPYIQAYA 248

Query: 215 DL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
            +      P        L  + G + K ++    +R + +  R  G PL  T H LRH+ 
Sbjct: 249 TIRRQRYQPEKTERAFFLTHYHG-QTKRISVNGIERLVSKYSRAFGHPL--TPHKLRHTL 305

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           A+ L     D   +   LG    S T +YT+V+
Sbjct: 306 ASELYDVTKDQVLVAQQLGQKGTSATDLYTHVD 338


>gi|296158621|ref|ZP_06841451.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295891189|gb|EFG70977.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 360

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 67/308 (21%), Positives = 136/308 (44%), Gaps = 37/308 (12%)

Query: 16  KERQNWLQNLEI--ERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           ++R++W ++ +I  +  L+K   +  S E    Q+ +FL +    + ++ T+   +  E 
Sbjct: 22  QQREDWRRDPQIAFDAWLAKQHFRRSSAEVYQAQWGLFLDWLGMRQKSLVTVDARTIAEF 81

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-----------ESNILNMRNLK 120
            A +  R+TQ++      R L  I+  L ++++ +  +           E+   N R+ +
Sbjct: 82  VAGLDVRKTQRM------RYLRLIERVLDHVREIESASTNPARFIAQDGEAAWRNARDNE 135

Query: 121 KSNSLPRALNEKQALTL-VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
            +  L  A  E+ ALT  + + L   S   +W + R+ A++ +  G GL+  EA +L+  
Sbjct: 136 PTGFLSHA--ERTALTAHLFSPLADLSAAQRWRERRDRALIAVFLGGGLKTGEAAALSVS 193

Query: 180 NIMDDQSTLRIQGKGD----KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
            +      + I+        + R+ P   ++  A L    L   +L  N+  P      G
Sbjct: 194 CVNAGSPWVTIEAANPMLTRRTRLAPFAAAILDAWLAERQLA--ELAGNLVFPA--SPSG 249

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTA----HTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           +P++     R +  L    G+  S T+     TLR++FA  L  +G +   +   LG  +
Sbjct: 250 RPMHKATMLRAVDALIGGAGIAASRTSRASPQTLRNTFAADLFESGVEAELVGQWLGFVQ 309

Query: 292 -LSTTQIY 298
            +S  ++Y
Sbjct: 310 AVSANRLY 317


>gi|163801756|ref|ZP_02195654.1| guanosine 5'-monophosphate oxidoreductase [Vibrio sp. AND4]
 gi|159174673|gb|EDP59475.1| guanosine 5'-monophosphate oxidoreductase [Vibrio sp. AND4]
          Length = 343

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 6/71 (8%)

Query: 236 KPLNPGVFQR------YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           KP +  +F+       YI + +  + LP    +H LRHSFA+H + NGG++  ++ ILGH
Sbjct: 255 KPTSEKLFEECYTPFCYILKNKLGITLPSGQASHVLRHSFASHFMMNGGNILVLRDILGH 314

Query: 290 FRLSTTQIYTN 300
             +S T  Y +
Sbjct: 315 ADISMTMRYAH 325


>gi|302387561|ref|YP_003823383.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302198189|gb|ADL05760.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 285

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 9/146 (6%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R S ++  +   G+R+SE   +T + +   ++ +  +GK    R + L   +R+A++ Y 
Sbjct: 129 RLSLVIQSICATGIRVSELQFITMEAVQAGRADVNCKGK---TRTIFLPEKLRRALISYA 185

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHL 273
                        P+F    GKPL+     R ++ L +   + P     H LRH FA   
Sbjct: 186 RRQKRSFG-----PVFVTKTGKPLDRSNIWRDMKDLCKSADVKPEKVFPHNLRHLFARIY 240

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYT 299
            +   DL  +  ILGH  ++TT+IYT
Sbjct: 241 YTLEKDLFRLADILGHSNINTTRIYT 266


>gi|291517466|emb|CBK71082.1| Site-specific recombinase XerD [Bifidobacterium longum subsp.
           longum F8]
          Length = 259

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 66/148 (44%), Gaps = 31/148 (20%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           +L L   CGLR  E   +  +++M D    +L + GKGDK RIVP+              
Sbjct: 116 MLRLGAECGLRRFEIAKVHSRDVMRDLVGWSLVVVGKGDKQRIVPIGD------------ 163

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST------TAHTLRHSFA 270
              DL L     L R   G  L PG +  +      Y+G  LS       TAH+LRH +A
Sbjct: 164 ---DLAL-----LIRSAHGY-LFPGRWSGHAES--SYVGRHLSDLLGDGWTAHSLRHRYA 212

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIY 298
           T   +   DL  +  +LGH  + TTQ Y
Sbjct: 213 TTTYAATRDLLLVSKLLGHASVETTQRY 240


>gi|229175638|ref|ZP_04303146.1| Integrase [Bacillus cereus MM3]
 gi|228607779|gb|EEK65093.1| Integrase [Bacillus cereus MM3]
          Length = 330

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/228 (21%), Positives = 103/228 (45%), Gaps = 14/228 (6%)

Query: 81  QKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           Q IG  D ++  ++  +++ + YL + ++   + I  ++ L++   L  + N+++     
Sbjct: 90  QGIGLCDTTININIRTLRALINYLYREELIEVNPIEKIKLLRQDIDLTNSFNDEEI---- 145

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGD 195
              +L   +   ++  R+   + +L   GLRI E + L   +I      + IQ    K  
Sbjct: 146 -KEILRQPNLRDFVGFRDFVGINVLLDSGLRIQELMGLRVSDIDFQTRFITIQANKSKNR 204

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R+VP+   V K +L+  +        +    +F    G+PL    F + ++      G
Sbjct: 205 KPRLVPVSTHVTKVLLQLINENQAHFKTD---RVFLSSYGEPLGANHFNKRLKYYAEKAG 261

Query: 256 L-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +     TAH  RH++A +++ NG D  ++Q I G   + T + Y  ++
Sbjct: 262 IKDKKVTAHVYRHTWAKNMILNGCDAFTLQKIGGWSDIRTMRRYIQMD 309


>gi|160884941|ref|ZP_02065944.1| hypothetical protein BACOVA_02932 [Bacteroides ovatus ATCC 8483]
 gi|156109291|gb|EDO11036.1| hypothetical protein BACOVA_02932 [Bacteroides ovatus ATCC 8483]
          Length = 411

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 22/168 (13%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQS----------TLRIQGKGDKIRIVPLLPSVRKA 209
            ++ C  GL   +  +L  ++++ D +           L  + K   I  +PLLP V  A
Sbjct: 250 FIFACFTGLAFVDVSTLKKEDMVQDNNGDWWIRKGRIKLMHRRKASSICNIPLLP-VPLA 308

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           IL+ Y+  P  +     LP+       P N  +   Y++++  + G+  + T H  RH+F
Sbjct: 309 ILKKYENNPVCIKKGYCLPV-------PCNQKM-NSYLKEIADFCGIKKNITTHVARHTF 360

Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            T + L+N   L+ +  +LGH     TQ Y  V + +    M+ + +Q
Sbjct: 361 GTTITLANNVPLQDVSVMLGHASTRMTQHYARVMNASLKKSMIHVKEQ 408


>gi|315297106|gb|EFU56386.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 16-3]
          Length = 127

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 56  VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 99


>gi|262067704|ref|ZP_06027316.1| integrase/recombinase [Fusobacterium periodonticum ATCC 33693]
 gi|291378429|gb|EFE85947.1| integrase/recombinase [Fusobacterium periodonticum ATCC 33693]
          Length = 280

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 111/269 (41%), Gaps = 30/269 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N++  LE E      T+ S   D  QFLI+L  +      I    +L    I+ + +K 
Sbjct: 7   KNFIYYLEFEENKKHNTVISIRKDLNQFLIYLNEHG-----IIDFNKLDELLIKEYFTKL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +T++I   +  R LS +K F KYL  + +  + + + + + K        L  ++     
Sbjct: 62  KTEEISVSTFNRRLSSVKKFYKYLVDKGLKEKGSEILIESEKNDEKQIEYLTPEEI---- 117

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKI 197
            N++  T     +   R+  +  LLY  G+ ++E LSL   N  ++ +    ++ K  K 
Sbjct: 118 -NLVRATMQGENFNILRDRLMFELLYSSGMTVAELLSLGEVNFNLEKREIYILKNKLSKT 176

Query: 198 R---------IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
                      +  L S ++   E       D N NI   +F     + L     +R I 
Sbjct: 177 MYFSETCKEFYIKFLNSKKEKFKE-------DYNPNI---IFTNNSNERLTDRSVRRLIN 226

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
           +      L    + +TLRHSF  ++L NG
Sbjct: 227 KYGEMANLNKEISPYTLRHSFCIYMLRNG 255


>gi|212692864|ref|ZP_03300992.1| hypothetical protein BACDOR_02364 [Bacteroides dorei DSM 17855]
 gi|212664653|gb|EEB25225.1| hypothetical protein BACDOR_02364 [Bacteroides dorei DSM 17855]
          Length = 407

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 16/151 (10%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYY 214
           A ++ LY  GLR  +   LT +N+      L+ +    KG       ++P +   +L   
Sbjct: 255 AFIFCLYS-GLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIP-LNDGLLSII 312

Query: 215 DLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
              P D N L   LP +              + +++  +  G+    + H  RHSFA ++
Sbjct: 313 GEAPADKNCLIFDLPTYESC----------CKSVKRWVKRAGIDKHISWHCARHSFAVNI 362

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           L+NG +++++ S+LGH  L  T+ YT    K
Sbjct: 363 LNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393


>gi|218442606|ref|YP_002380927.1| integrase [Cyanothece sp. PCC 7424]
 gi|218175377|gb|ACK74108.1| integrase family protein [Cyanothece sp. PCC 7424]
          Length = 329

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 14/156 (8%)

Query: 160 LYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL- 216
           + +L GC  R  E   L   +I+   +   LR+ GK   IR+VPL P +   + +Y    
Sbjct: 162 IMVLQGC--RTVEMHRLKMHDIIRQGNNVGLRVSGK-RSIRVVPLTPDLALLLDKYLAAR 218

Query: 217 CPFDLNLNIQLPLFRGIR----GKPLN----PGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
                 LN   P+F  +     G+PL+      + Q++++  ++        T H+LRH+
Sbjct: 219 TAAGDRLNDNTPIFISLSNANYGEPLSRRSIQRIVQKHLQAFKQTGTNARKLTTHSLRHT 278

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             T  L  G +LR +Q +LGH    TT +Y ++  +
Sbjct: 279 AGTLALRTGAELRQVQDMLGHADPRTTALYAHIADR 314


>gi|300855859|ref|YP_003780843.1| putative integrase/recombinase [Clostridium ljungdahlii DSM 13528]
 gi|300435974|gb|ADK15741.1| putative integrase/recombinase [Clostridium ljungdahlii DSM 13528]
          Length = 199

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 6/153 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEY 213
           R+ AI  + Y CGLR SE   +  ++    +  +  +  KG     + L    + A+  Y
Sbjct: 34  RDLAIFRVAYRCGLRASEIGLIKLEDYNASKGAIYCKRLKGSYNNTIRLDVKTKNALDTY 93

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH--TLRHSFAT 271
                   N      LF+  RGKP++       +++   Y  +   +  H  +++H+ A 
Sbjct: 94  IHESKLSSNSEF---LFKSQRGKPISRQTLDYMMKKYCSYANIYDKSKYHFHSIKHTTAV 150

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           HL  +  D++ +Q  LGH  ++ T+IY    +K
Sbjct: 151 HLAESDMDIKELQWWLGHKSVTNTEIYFQFTTK 183


>gi|23336338|ref|ZP_00121559.1| COG4974: Site-specific recombinase XerD [Bifidobacterium longum
           DJO10A]
          Length = 201

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 70/177 (39%), Gaps = 14/177 (7%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
           RN  +L L+Y    RI E  +LT  ++ MD  + + + GK  K R+VPL    R  +  Y
Sbjct: 7   RNRMLLILMYDTAARIGELAALTIADVGMDKPARVTLTGKRGKSRVVPLGERTRTHLAAY 66

Query: 214 YD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG---------LPLSTTAH 263
            +   P     +   PLF   R   + P    R    L+             +P     H
Sbjct: 67  LEEFHPGPSMRDGDRPLFHSTRNGAIQPLSVDRIDEILKTAAARARRGTCPSMPERVHCH 126

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
            +R + A  L   G  L  I  +LGH  +STT  +    +    D M +  D  +P 
Sbjct: 127 LIRRTRAMDLYQQGVPLPLIMQLLGHESMSTTSAFYAFATL---DMMRKAVDAANPG 180


>gi|329925024|ref|ZP_08279968.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
 gi|328940143|gb|EGG36475.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
          Length = 346

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 2/162 (1%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
            +    + +W   R+  I+ L+   GLR+ E  +L    I   + ++ +    +K R   
Sbjct: 162 FMKAPDQRQWAQWRDYVIMTLILDTGLRLGEICALEKPEIDFVKKSITLPASKNKNRKSR 221

Query: 202 LLP-SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
            LP S   A L    +   + N +    +F    G+ L+    Q+          L  + 
Sbjct: 222 TLPLSTETARLLKQLIAETERNFDTTY-VFTTNYGEQLSEKTIQKSFDNYAERAKLGRTV 280

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           + H LRH+FAT    NG  +  +Q ++GH  ++TT+ Y  ++
Sbjct: 281 SPHVLRHNFATMAAENGMSIFHLQKLMGHADIATTRKYVQIS 322


>gi|313201274|ref|YP_004039932.1| integrase family protein [Methylovorus sp. MP688]
 gi|312440590|gb|ADQ84696.1| integrase family protein [Methylovorus sp. MP688]
          Length = 338

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 131/317 (41%), Gaps = 38/317 (11%)

Query: 3   GNNLPEIVSFELLKER---QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
              L + +S EL + R   +N   N+ ++    K+  Q +E     F +   +   +K  
Sbjct: 33  AQKLHDKISTELWEGRWIDRNQSGNMTLDAAFDKVMAQRWEKQRSWFSVIHNYNRFKKYL 92

Query: 60  IQTIR--QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
             + +  +++ + +   I + R  +  D ++ RS++ I + LK  +      E  I  + 
Sbjct: 93  KGSTKLSEITRSRLWEVIGEMREDEYTDGTINRSMAVISTILKTARDDWEVIE-KIPKVP 151

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
            LK      R L + + L  ++       H+   +D     ++ +L   G R+SE L L 
Sbjct: 152 LLKVGRGRMRWLKDDEELPFLEWFRKQGDHDM--VD-----LIEVLLETGCRVSEILRLK 204

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-----NIQLPLFRG 232
             ++  ++  L              L   +    EY  L  + L +      I +P F G
Sbjct: 205 DTDVHINERRL-------------YLGITKSGEEEYQPLSEYALQIFLRRYKIGVPPFEG 251

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLP--LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
           +       G   R+ +  +R+LG         HT+RH+ A+ L+ +G DL+ +Q  + H 
Sbjct: 252 VS----RWGALSRF-QTAKRHLGYADDHELVLHTMRHTCASRLVQSGVDLKRVQEYMRHK 306

Query: 291 RLSTTQIYTNVNSKNGG 307
            ++TT IY  ++S+   
Sbjct: 307 DINTTLIYAKLSSEENA 323


>gi|300727390|ref|ZP_07060803.1| phage integrase family protein [Prevotella bryantii B14]
 gi|299775330|gb|EFI71927.1| phage integrase family protein [Prevotella bryantii B14]
          Length = 328

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 68/155 (43%), Gaps = 12/155 (7%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A++ LL   G+R+ E + L   +I        + GKGDK R V    +  K  L+ Y
Sbjct: 172 RDLALIDLLASTGMRVGELVRLNKNDIDYQNRECIVTGKGDKQRKV-YFDARTKIHLQKY 230

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLN----PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
                D N  + + L       P N     GV  R +R+L R L +P     H  R + A
Sbjct: 231 VNSRTDTNDALFVSLL-----SPNNRLEISGVEIR-LRRLGRELNIP-KVHPHKFRRTLA 283

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           T  +  G  +  +Q +LGH  L TT  Y  VN  N
Sbjct: 284 TMAIDKGMPIEQVQHLLGHQSLDTTLQYAMVNQNN 318


>gi|262172444|ref|ZP_06040122.1| site-specific recombinase phage integrase family protein [Vibrio
           mimicus MB-451]
 gi|261893520|gb|EEY39506.1| site-specific recombinase phage integrase family protein [Vibrio
           mimicus MB-451]
          Length = 380

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 67/167 (40%), Gaps = 21/167 (12%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR----------- 207
           ++ L+ G G+RISE LS          S L+   +   IR+   + +++           
Sbjct: 188 MMALMLGTGMRISEVLSAPMSAFPSYASVLKDPNRMYSIRLDSRVMTIKNNKTRTVFIPG 247

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +  L  YD     L    Q   F     +   P   Q+  ++     GL  S T HTLRH
Sbjct: 248 RLFLTIYDQVSPSLYAGNQSLFFANENHQAWTPSTIQKSFKRASNLAGLRYSITPHTLRH 307

Query: 268 SFATHLL---------SNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
            FAT  L         S    L  +Q  LGH  +STT  IY N+ S+
Sbjct: 308 VFATGTLEQWQESGFSSEMACLIWLQKQLGHSHVSTTANIYINMTSE 354


>gi|330997656|ref|ZP_08321501.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329570184|gb|EGG51924.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 409

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 24/192 (12%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K+  + PRAL+++    + D  L     E   +       L+  Y  G    + +++TP 
Sbjct: 217 KQKETAPRALSKEDFEKIRDIELTGCRPEHSIV---RDMFLFACYA-GTSYVDVVAITPD 272

Query: 180 NIM-DDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           N+  DD   L ++   GK  ++  V LLP     I +Y D        + +  LF     
Sbjct: 273 NLSRDDSGALWLKYRRGKNGQLSRVKLLPEAIDLIDKYRD--------DTRATLF----- 319

Query: 236 KPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLS 293
            P+ P    +  +  ++  +G+    + H  RHSF+T + L NG  + ++  +LGH  + 
Sbjct: 320 -PVIPYQALKWCLTSIKMKVGIKGRLSYHMGRHSFSTLMTLENGVPIETVSRMLGHADIR 378

Query: 294 TTQIYTNVNSKN 305
           TTQ+Y  V  K 
Sbjct: 379 TTQVYARVTPKK 390


>gi|301027042|ref|ZP_07190421.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 196-1]
 gi|299879442|gb|EFI87653.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 196-1]
          Length = 147

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 76  VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 119


>gi|329960271|ref|ZP_08298713.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328532944|gb|EGF59721.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 429

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 7/102 (6%)

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIR----QLRRYLG--LPLSTTAHTLRHSFATHL-LS 275
           LN+ L +    R +  +  +F  Y R    +L R LG       T H  RH+F TH+ LS
Sbjct: 305 LNVPLQIIEKYRHERKSDRIFNLYCRGYLIKLTRELGRTYGFDMTFHKARHNFGTHITLS 364

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            G  + ++  ++GH  +STTQIY  V  +   + M  + +QT
Sbjct: 365 LGVPIETVSRMMGHKSISTTQIYAKVTDRKVDEDMKRLKEQT 406


>gi|317483230|ref|ZP_07942225.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316915299|gb|EFV36726.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 387

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 115/273 (42%), Gaps = 36/273 (13%)

Query: 52  FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111
            Y EE+   + I  ++  E++A+IS       G  S++R    +    +   + K+  ++
Sbjct: 91  LYCEERWADRRIGTITRAEVQAWISDI-IASAGAPSVRRPYQTMLGICRMAVRDKLILDN 149

Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET---KWIDARNSAILYLLYGCGL 168
              N+   K    LPR  + +  LT+  + LL  + E    K + A   A++  L  CGL
Sbjct: 150 PCENVELPK----LPRRKSRRVYLTI--SRLLAFADECSRGKHLGAERRALVLTLGFCGL 203

Query: 169 RISEALSLTPQNIMDDQSTLRIQG--------------KGDKIRIVPLLPSVRKAILEYY 214
           R  EA +L  +++   +  L + G              K  + R VP+   V +A     
Sbjct: 204 RWGEAAALKARDLDFGRGVLHVGGNLVYVGARWVEGTPKNSEERDVPMPLIVMEA----- 258

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPL---NPGVFQRYIRQLRRYLGLPLS--TTAHTLRHSF 269
            L P          +FR +RG P+   +      +       LG P     T H LRH+ 
Sbjct: 259 -LKPMCGEREPDERVFRDLRGGPIMKQSAAKTTGWWYHALVCLGWPKEEWPTPHDLRHTA 317

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           A+  +  G +++++Q +LGH   S T  +Y ++
Sbjct: 318 ASLAVHAGANVKALQRMLGHKNASMTLDVYADL 350


>gi|116626671|ref|YP_828827.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229833|gb|ABJ88542.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 265

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 4/127 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213
           R+  IL  LY  G+R +E   L  ++I  ++  L I QGKG K R VPL P +   +  +
Sbjct: 120 RHRTILMALYATGMRRAELCHLRIEDIDKERMVLHIRQGKGGKDREVPLPPKLLAQLRIH 179

Query: 214 YDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           Y   P         P  +  R  +P+         RQ  R  G+  S   HTLRH  A+ 
Sbjct: 180 YRALPH--RSAWVFPSLQSRRPDQPMTEKAVWHACRQAARRAGITKSVHPHTLRHYAASR 237

Query: 273 LLSNGGD 279
            +  G +
Sbjct: 238 TMPRGSE 244


>gi|15673214|ref|NP_267388.1| site-specific tyrosine recombinase XerS [Lactococcus lactis subsp.
           lactis Il1403]
 gi|281491737|ref|YP_003353717.1| site-specific tyrosine recombinase XerC [Lactococcus lactis subsp.
           lactis KF147]
 gi|34223004|sp|Q9CG78|XERS_LACLA RecName: Full=Tyrosine recombinase xerS
 gi|12724203|gb|AAK05330.1|AE006355_5 integrase-recombinase [Lactococcus lactis subsp. lactis Il1403]
 gi|281375451|gb|ADA64961.1| Site-specific tyrosine recombinase XerC [Lactococcus lactis subsp.
           lactis KF147]
 gi|326406772|gb|ADZ63843.1| site-specific tyrosine recombinase XerC [Lactococcus lactis subsp.
           lactis CV56]
          Length = 356

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 106/263 (40%), Gaps = 46/263 (17%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-------KKSNSLP-RALNEKQA 134
           +   ++ R+LS + S  KYL +     +      RN+       KKS +L  RA N K  
Sbjct: 101 VSQTTINRTLSALSSLYKYLTEEVENEDGEPYFYRNVMKKVQTKKKSETLASRAENIKGK 160

Query: 135 LTLVDNVLLHTSHETKWID----------ARNS---------AILYLLYGCGLRISEALS 175
           L L D     T     +ID          AR+S         AI+ L+   G+R+SEA++
Sbjct: 161 LFLGD----ETQGFLDYIDNEYEKTLSNRARSSFFKNKERDLAIIALILASGIRLSEAVN 216

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY-------YDLCPFDLNLNIQLP 228
           +  +++      + +  KG K   VP  P  +     Y       Y     D    +   
Sbjct: 217 VDLRDLNLITMVVEVTRKGGKRDAVPYAPFAKTYFERYLEVRSQRYKTTAKDTAFFV--T 274

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           L+R +  + ++P   ++ + +  +     +  T H LRH+ AT L +       + + LG
Sbjct: 275 LYRDVPSR-IDPSSVEKLVAKYSQ--AFKVRVTPHKLRHTLATRLYAQTNSQVLVSNQLG 331

Query: 289 HFRLSTTQIYTNV---NSKNGGD 308
           H     T +YT++     KN  D
Sbjct: 332 HASTQVTDLYTHIINEEQKNALD 354


>gi|237737422|ref|ZP_04567903.1| DNA integration/recombination/invertion protein [Fusobacterium
           mortiferum ATCC 9817]
 gi|229421284|gb|EEO36331.1| DNA integration/recombination/invertion protein [Fusobacterium
           mortiferum ATCC 9817]
          Length = 350

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 86/178 (48%), Gaps = 14/178 (7%)

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-- 188
           E++  T  +  +L  +  +K    + + I+ +L   G+RI E  +L  ++I  +  T+  
Sbjct: 173 ERKIFTQKEIEILWENLNSKTYHGKYTYIILILIYTGMRIGELFNLKTEDIDLENRTIKV 232

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF-RGIRGKPLNPGVFQRYI 247
           R+      +R +P+   +       ++L  F  NL I    F +G     L+   F+   
Sbjct: 233 RVSKTSAGVRTIPIFSKI-------FNL--FKDNLIIGQEYFVKGDTTTQLSYATFKPRF 283

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           ++L + LG+    T H  RH+FAT L +   +  SI  ++GH   STT+ IYT+ +++
Sbjct: 284 KKLLKELGIQ-EHTIHDTRHTFATMLNNANANSTSIIRLIGHSNFSTTENIYTHKDTE 340


>gi|213648766|ref|ZP_03378819.1| site-specific recombinase, phage integrase family protein
           [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
          Length = 296

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 128/309 (41%), Gaps = 51/309 (16%)

Query: 8   EIVSFE----LLKERQNWLQNLEIERGLSKL-------TLQSYECDTRQFLIFLAFYTEE 56
           E V+FE        ++ W       R LS+L         Q++E  T++F   L   T  
Sbjct: 4   EAVAFERYTIAYASQKEWAGQRADRRTLSELLNIWWKYHGQNHEHGTKEFNHLLK--TIS 61

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS---LSGIKSFLKYLKKRKITTESNI 113
            I    + ++S   +  + S R    I   ++ R    LSG+  F K ++  + + +  I
Sbjct: 62  GIGDIPVSRMSKRALMDYRSMRLRDGISAATINRDMYRLSGM--FTKLIQLDEFSGQHPI 119

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
             +  L ++N     L EK  +  + NVL          D  +  +  L    G R +E 
Sbjct: 120 HGLPPLAEANPEMTFL-EKAEIEKLLNVL----------DGDDLLVALLCLSTGGRWTEV 168

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
            +L P  I + + T  ++ K  K R VP+   + K + E      F ++           
Sbjct: 169 ATLKPAQITNCRVTF-LKTKNGKKRTVPISEELEKKVKEEASAKLFKVD----------- 216

Query: 234 RGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                    ++++   LRR    +P +   H LRH+FA+H + NGG++ ++Q ILGH  +
Sbjct: 217 ---------YEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASI 267

Query: 293 STTQIYTNV 301
             T  Y ++
Sbjct: 268 QQTMAYAHL 276


>gi|320188610|gb|EFW63272.1| Integrase [Escherichia coli O157:H7 str. EC1212]
          Length = 333

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 56/134 (41%), Gaps = 21/134 (15%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G R SEA  L    ++  + T  ++ KG K R VP+ P                  L   
Sbjct: 202 GARWSEAEGLKQSQVLPGRITF-VKTKGKKNRTVPISP-----------------QLQAM 243

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           LP  RG    P     F   I+  R  + L      H LRH+FA+H +  GG++  +Q I
Sbjct: 244 LPKKRGALFSPCYE-AFDAAIK--RAKIELLDGQLTHVLRHTFASHFMMRGGNILVLQKI 300

Query: 287 LGHFRLSTTQIYTN 300
           LGH  +  T  Y +
Sbjct: 301 LGHSDIKMTMRYAH 314


>gi|317477538|ref|ZP_07936762.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906292|gb|EFV28022.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 429

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 7/102 (6%)

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIR----QLRRYLG--LPLSTTAHTLRHSFATHL-LS 275
           LN+ L +    R +  +  +F  Y R    +L R LG       T H  RH+F TH+ LS
Sbjct: 305 LNVPLQIIEKYRHERKSDRIFNLYCRGYLIKLTRELGRTYGFDMTFHKARHNFGTHITLS 364

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            G  + ++  ++GH  +STTQIY  V  +   + M  + +QT
Sbjct: 365 LGVPIETVSRMMGHKSISTTQIYAKVTDRKVDEDMKRLKEQT 406


>gi|160884309|ref|ZP_02065312.1| hypothetical protein BACOVA_02287 [Bacteroides ovatus ATCC 8483]
 gi|156110048|gb|EDO11793.1| hypothetical protein BACOVA_02287 [Bacteroides ovatus ATCC 8483]
          Length = 160

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 20/144 (13%)

Query: 163 LYGC--GLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           L+ C  GLRIS+ + L  +NI+   D    + I  K  K   V  LP   +A+     LC
Sbjct: 17  LFSCLTGLRISDIIRLQWENIVKGADGGWCMHIVTKKTKTEAV--LPLSDEAL----ALC 70

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
                   +  +F+G     L   +   Y++   +  G+    T H  RH++AT  L+ G
Sbjct: 71  ----GERTEGQVFKG-----LTKTILPLYLKDWIKSAGITKHITFHGFRHTYATLQLAAG 121

Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301
            DL +I  +L H  + TTQ+Y +V
Sbjct: 122 TDLYTISKMLTHSNVGTTQVYADV 145


>gi|139438172|ref|ZP_01771725.1| Hypothetical protein COLAER_00713 [Collinsella aerofaciens ATCC
           25986]
 gi|133776369|gb|EBA40189.1| Hypothetical protein COLAER_00713 [Collinsella aerofaciens ATCC
           25986]
          Length = 308

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 12/146 (8%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY 213
           ++ ++   GLR SEAL LTP++      TL +    D       +P     SVRK  L++
Sbjct: 141 LILIVAKTGLRFSEALGLTPEDFDFAHQTLSVNKTWDYKNGGGFVPTKNASSVRKVQLDW 200

Query: 214 ---YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
                L     +L    P+F   +GK  N        R  +  +G+P+  + H LRH+ A
Sbjct: 201 QLIMQLSGLLKDLPPTEPIFA--KGKVYNSTANSVLARHCKN-VGVPV-ISVHGLRHTHA 256

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQ 296
           + LL  G  + S+   LGH  ++TTQ
Sbjct: 257 SLLLFAGVSIASVSRRLGHASMTTTQ 282


>gi|49146142|ref|YP_025580.1| site-specific recombinase [Mycobacterium ulcerans Agy99]
 gi|42414776|emb|CAE46869.1| possible site-specific recombinase [Mycobacterium ulcerans Agy99]
          Length = 345

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 127/315 (40%), Gaps = 48/315 (15%)

Query: 21  WLQNLEIERGLSKL---TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA-FIS 76
           W      +R + K    T ++Y  D     + LA   +   T+ T   L+   +RA F  
Sbjct: 18  WFGEFLADRAIRKPSPHTTKAYRQDFEAVALLLAGGADAISTLPT-NALNKESLRAAFAV 76

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLPRALNEKQA 134
              T      S++R  S   +   +L        +N+L+   +       +P+AL +   
Sbjct: 77  YAETHSAA--SIRRCWSTWNTLCTFLYT------ANLLDANPMPAIGRPKVPKALPKSYT 128

Query: 135 LTLVDNVLLH------TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----- 183
              V+N++        ++  + W + R+ AI++     GLR  E   L   NI D     
Sbjct: 129 ADAVNNLIAAIDTDDGSARRSNWPE-RDRAIIFTALLTGLRADE---LIRANIGDIRCNA 184

Query: 184 DQSTLRIQGKGDKIRIVP----LLPSVRKAILEYYDLCPF--------DL--NLNIQLPL 229
           D   L + GKG+K R +P    L+  +++ +    D  P         D+    +   PL
Sbjct: 185 DGGVLHVSGKGNKDRRIPCDTKLIEMLQRYLQTREDRIPHLRKRSASPDVMGRFSPTAPL 244

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGL----PLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
           F G  G+ +  G  Q  I +  +  G+          H LRH+FAT L +    + ++  
Sbjct: 245 FVGSDGERITRGTLQYRILRGFKKAGINNDRAAGALVHGLRHTFATELANANVSVYALMK 304

Query: 286 ILGHFRLSTTQIYTN 300
           +LGH  + T+Q Y +
Sbjct: 305 LLGHESMVTSQRYVD 319


>gi|224025612|ref|ZP_03643978.1| hypothetical protein BACCOPRO_02352 [Bacteroides coprophilus DSM
           18228]
 gi|224018848|gb|EEF76846.1| hypothetical protein BACCOPRO_02352 [Bacteroides coprophilus DSM
           18228]
          Length = 219

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 9/113 (7%)

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           +++ K D +  +PLL  + + ILE Y   P      + LP+       P N  +   Y++
Sbjct: 98  KVREKTDNMCDIPLL-DIPRLILEKYQSNPICNEKGLLLPV-------PSNQRM-NSYLK 148

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           ++    G+  + + H  RH+FA+  ++N   L SI  +LGH  + TT+IY  +
Sbjct: 149 EIADVCGIQKNLSTHIARHTFASLAIANKVSLESIAKMLGHTDIRTTRIYAKI 201


>gi|195940604|ref|ZP_03085986.1| resolvase [Escherichia coli O157:H7 str. EC4024]
          Length = 241

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 40/176 (22%)

Query: 159 ILYLLYGCGLRISEALSLT-------PQNIMDDQSTL------------RIQGKGDKIRI 199
           +L  L+  G RI+EAL+LT       P       +TL            R+       R+
Sbjct: 45  LLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRMPAGQQTHRL 104

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG-- 255
           VPL  S   + L+        +   +++P+ R  R  G+     +++   R +R ++G  
Sbjct: 105 VPLSDSWYVSQLQ-------TMVATLKIPMERRNRRTGRTEKARIWEVTDRTVRTWIGEA 157

Query: 256 ----------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                       +  T HT RHS+A H+L  G  L+ +QS++GH  +S+ ++YT V
Sbjct: 158 VAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSKEVYTKV 213


>gi|189465783|ref|ZP_03014568.1| hypothetical protein BACINT_02144 [Bacteroides intestinalis DSM
           17393]
 gi|189434047|gb|EDV03032.1| hypothetical protein BACINT_02144 [Bacteroides intestinalis DSM
           17393]
          Length = 429

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 7/102 (6%)

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIR----QLRRYLG--LPLSTTAHTLRHSFATHL-LS 275
           LN+ L +    R +  +  +F  Y R    +L R LG       T H  RH+F TH+ LS
Sbjct: 305 LNVPLQIIEKYRHERKSDRIFNLYCRGYLIKLTRELGRTYGFDMTFHKARHNFGTHITLS 364

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            G  + ++  ++GH  +STTQIY  V  +   + M  + +QT
Sbjct: 365 LGVPIETVSRMMGHKSISTTQIYAKVTDRKVDEDMKRLKEQT 406


>gi|189460320|ref|ZP_03009105.1| hypothetical protein BACCOP_00957 [Bacteroides coprocola DSM 17136]
 gi|298388052|ref|ZP_06997598.1| integrase [Bacteroides sp. 1_1_14]
 gi|332877186|ref|ZP_08444935.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|189433018|gb|EDV02003.1| hypothetical protein BACCOP_00957 [Bacteroides coprocola DSM 17136]
 gi|298259152|gb|EFI02030.1| integrase [Bacteroides sp. 1_1_14]
 gi|332684776|gb|EGJ57624.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 429

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 7/102 (6%)

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIR----QLRRYLG--LPLSTTAHTLRHSFATHL-LS 275
           LN+ L +    R +  +  +F  Y R    +L R LG       T H  RH+F TH+ LS
Sbjct: 305 LNVPLQIIEKYRHERKSDRIFNLYCRGYLIKLTRELGRTYGFDMTFHKARHNFGTHITLS 364

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            G  + ++  ++GH  +STTQIY  V  +   + M  + +QT
Sbjct: 365 LGVPIETVSRMMGHKSISTTQIYAKVTDRKVDEDMKRLKEQT 406


>gi|168822775|ref|ZP_02834775.1| Rsd [Salmonella enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205340857|gb|EDZ27621.1| Rsd [Salmonella enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|320089223|emb|CBY98976.1| Resolvase Protein D [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 260

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 31/44 (70%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T HT RHS+A H+L  G  L+ +Q+++GH  +S+T++YT V
Sbjct: 189 VPVTPHTFRHSYAMHMLYAGIPLKVLQAMMGHKSISSTEVYTKV 232


>gi|116255544|ref|YP_771377.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115260192|emb|CAK03296.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 410

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 123/283 (43%), Gaps = 26/283 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RG SK ++  +    R+FL     + E       + QL+++E+R +++     +  + SL
Sbjct: 129 RGYSKHSISGHIWSARRFL--QTIWAEHG----GVSQLTHSEVRDYLANNLDGRKSN-SL 181

Query: 89  KRSLSGIKSFLKYLKKRKITT---ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
               S ++  L++L+   +T     + + + RNL+ S +LP  ++  Q      N +L  
Sbjct: 182 VTWYSHLRVLLRFLQASGLTELDLSAAVPSPRNLRFS-ALPAYMSVSQL-----NSVLEA 235

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
              +     R+ A+L LL   G+R SE   L+  +I      LR+ GKG ++  +PL   
Sbjct: 236 CDLSTIPGRRDLAVLLLLSRLGMRASEVARLSLDDIDWRSGLLRVNGKGGRVATMPLPKD 295

Query: 206 VRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLS 259
           V  AI +Y            +   +Q P        P    V     R L+R  +    S
Sbjct: 296 VGAAISDYILHGRPTSGSHTIFHRVQTPCTPFTTATP----VILIAGRALKRAKVTGTRS 351

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             AH  RH+FAT  + +G  +  +  +L H    TT+IY   +
Sbjct: 352 HHAHIFRHTFATIAIRSGVGMTELAQLLRHKDPDTTRIYAKFD 394


>gi|29349952|ref|NP_813455.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341863|gb|AAO79649.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 308

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           P  P  ++ Y  +L   LG+P     H LRHSFAT  +  G D +++  +LGH  +STT
Sbjct: 226 PTEPRTYRNYYTKLMEKLGIP-KLKYHGLRHSFATRCIEAGCDYKTVSVLLGHSNISTT 283


>gi|330685083|gb|EGG96750.1| site-specific recombinase, phage integrase family [Staphylococcus
           epidermidis VCU121]
          Length = 406

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 86/208 (41%), Gaps = 32/208 (15%)

Query: 132 KQALTLVDNVLLHTSHETKWIDARN----SAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           K+ L+  D ++ H  H T+    RN     AI+      G+RI E L++  +NI  +  T
Sbjct: 193 KELLSCFDYLIKHKKHSTR---KRNYKMVKAIVQFQIANGMRIGELLAIKRENINYEDKT 249

Query: 188 LRIQGK----GDK----------------IRIVPLLPS----VRKAILEYYDLCPFDLNL 223
           L I G      DK                 R + L       ++  IL+      ++ + 
Sbjct: 250 LDIDGTINWVTDKETGAFGVKETTKTSKSYRTIGLTTQSINLLKTLILDNKKENQWNEDF 309

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             +  +F    G P++       I++      +    T HTLRH+  + L   G +L++I
Sbjct: 310 IDRGYVFTNTAGSPIDLNKVNSIIKEATEISSIKKRVTTHTLRHTHISTLAQLGINLKAI 369

Query: 284 QSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           Q  +GH    TT +IYT+V  +   D M
Sbjct: 370 QERVGHSDYKTTLEIYTHVTDQMAKDMM 397


>gi|323493805|ref|ZP_08098923.1| integrase [Vibrio brasiliensis LMG 20546]
 gi|323311939|gb|EGA65085.1| integrase [Vibrio brasiliensis LMG 20546]
          Length = 342

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%)

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LP     H LRH+FA+H + NGGD+ +++ ILGH  ++ T  Y ++
Sbjct: 263 LPKGQKVHVLRHTFASHFVMNGGDILTLKEILGHASINQTMTYAHL 308


>gi|298374817|ref|ZP_06984775.1| integrase [Bacteroides sp. 3_1_19]
 gi|298269185|gb|EFI10840.1| integrase [Bacteroides sp. 3_1_19]
          Length = 408

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 16/147 (10%)

Query: 162 LLYGC--GLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD 215
            L+ C  GL   +   L P++++ D++  + I+    K +I   +PLL  +  AIL+ Y 
Sbjct: 250 FLFQCWTGLAFIDVSELKPEHLVTDNEGNIWIRKARQKTKIMCNIPLL-DIPLAILDKYK 308

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
             P        LP+       P N      Y++++  + G+  + T HT RH+F+T + L
Sbjct: 309 GYPICEKKGTLLPV-------PCNQKA-NSYLKEIADFCGIKKNLTTHTGRHTFSTVVTL 360

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +N   L ++  +LGH     TQ Y  V
Sbjct: 361 ANNVSLENVSKMLGHTNTKMTQRYAKV 387


>gi|296241818|ref|YP_003649305.1| integrase family protein [Thermosphaera aggregans DSM 11486]
 gi|296094402|gb|ADG90353.1| integrase family protein [Thermosphaera aggregans DSM 11486]
          Length = 339

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 64/134 (47%), Gaps = 12/134 (8%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           GLR  E L++   +I  D  T+R+ +GK  K R V        A  E + L    + LN 
Sbjct: 155 GLRSKEVLNIKVGDIDFDGRTIRVVEGKYGKERYV-------TASNETFKLIEAWVKLN- 206

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQ 284
              L R  R   L  G   + +++L    G+P      H LRH+FAT  L  G  L S+Q
Sbjct: 207 --NLGRDDRLVDLTYGGLYKKLKRLAAKAGIPPEKIRPHVLRHTFATRALRLGISLPSLQ 264

Query: 285 SILGHFRLSTTQIY 298
            +LGH  + TTQ+Y
Sbjct: 265 RLLGHTDIRTTQVY 278


>gi|238785298|ref|ZP_04629288.1| hypothetical protein yberc0001_36180 [Yersinia bercovieri ATCC
           43970]
 gi|238713811|gb|EEQ05833.1| hypothetical protein yberc0001_36180 [Yersinia bercovieri ATCC
           43970]
          Length = 256

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 83/177 (46%), Gaps = 26/177 (14%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQ--NIMDDQSTL-------RIQGKGDKI------ 197
           D R   ++  L+  G R++EAL+LTP   +I  D   +       R +G+G         
Sbjct: 62  DLRQRLLIETLWNTGARLNEALALTPACFHIEGDSPFVVLKTLKQRQKGRGRPKEGQALK 121

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR----QLRR- 252
           RIVPLL      ++  Y L  F        PL+    G  ++    + ++R    + RR 
Sbjct: 122 RIVPLLDENYVRLVHEY-LATF--RPRKYAPLWVNEHGDTISDETPRSWLRAAVTRARRD 178

Query: 253 --YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                LP+  T  T RHSFA HL+ +G   + +Q+ +GH   ++T++YT + + + G
Sbjct: 179 GVTFSLPV-ITPKTFRHSFAMHLVQSGVAFKVVQTFMGHKDAASTEVYTRIFALDVG 234


>gi|323484865|ref|ZP_08090221.1| phage integrase family Integrase/recombinase [Clostridium symbiosum
           WAL-14163]
 gi|323401861|gb|EGA94203.1| phage integrase family Integrase/recombinase [Clostridium symbiosum
           WAL-14163]
          Length = 279

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 9/145 (6%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R   I+  +   G+RISE  S+T Q + D    +  +GK  ++    L+P      L +Y
Sbjct: 124 RICLIIQTIGSTGIRISELPSITVQAVKDGGVQVDCKGKSRQV----LMPKKLTMKLMHY 179

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHL 273
                        P+FR  +G P++     + ++++ R  G+       H LRH FA   
Sbjct: 180 ----IKKEKIRSGPVFRTKQGNPIDRSNIWKEMKKICRKAGIKEKKVFPHNLRHLFACSF 235

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIY 298
                D+  +  +LGH  ++TT+IY
Sbjct: 236 YQMEKDIAKLADLLGHSNINTTRIY 260


>gi|298245438|ref|ZP_06969244.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297552919|gb|EFH86784.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 184

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 8/133 (6%)

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH- 144
           R+++     +  F  +L   K   E+ + ++++ K    L R   E + + L D      
Sbjct: 47  RTIETYFRDVLVFFNWLVAHKHLEENPMADLKSPKTEKPLIRVFTEDELMRL-DAACDRE 105

Query: 145 ------TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                 T  E K + AR+ A L+LL   G+RISEA  L   +I  D   + ++GKG K R
Sbjct: 106 PKGRSLTQDERKALAARDRAFLWLLLSTGIRISEACGLLFADIDWDMGMIFVRGKGSKER 165

Query: 199 IVPLLPSVRKAIL 211
            VP     R+ ++
Sbjct: 166 KVPFGKVARQHLV 178


>gi|291515193|emb|CBK64403.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 429

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 7/102 (6%)

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIR----QLRRYLG--LPLSTTAHTLRHSFATHL-LS 275
           LN+ L +    R +  +  +F  Y R    +L R LG       T H  RH+F TH+ LS
Sbjct: 305 LNVPLQIIEKYRHERKSDRIFNLYCRGYLIKLTRELGRTYGFDMTFHKARHNFGTHITLS 364

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            G  + ++  ++GH  +STTQIY  V  +   + M  + +QT
Sbjct: 365 LGVPIETVSRMMGHKSISTTQIYAKVTDRKVDEDMKRLKEQT 406


>gi|282858566|ref|ZP_06267736.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282588657|gb|EFB93792.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 380

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 14/142 (9%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP--LLPSVRKAILEYYDLC 217
            ++ C  GL   +  +L P+NI+       I  K  K  +    LL  + K+I+  Y   
Sbjct: 249 FVFSCFTGLAYIDVYNLAPENIVTLNGKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSGK 308

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            +         LF  +  + LN      Y++++    G+  + T H  RH+FAT  LS G
Sbjct: 309 TYR-----DGKLFPMLTNQKLNS-----YLKEIADICGIKKNLTFHLARHTFATMSLSKG 358

Query: 278 GDLRSIQSILGHFRLSTTQIYT 299
             + S+  +LGH  + TTQIY 
Sbjct: 359 VPIESVSKMLGHTNIKTTQIYA 380


>gi|256393762|ref|YP_003115326.1| integrase family protein [Catenulispora acidiphila DSM 44928]
 gi|256359988|gb|ACU73485.1| integrase family protein [Catenulispora acidiphila DSM 44928]
          Length = 353

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 22/168 (13%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQ-GKGDKIRIVPLLPSVRKA 209
           R+  IL LL   G R++E  +    ++   + T    LRI+ GKG + R VPL  ++  +
Sbjct: 175 RDEVILRLLTETGPRVAEVCAANLDDVRQHELTGMPVLRIRAGKGGRSRDVPLSQTL-VS 233

Query: 210 ILEYYD----LCPFDLNL-----NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-- 258
           +LE Y       P   +      +    L   IRG+ +     QR +   RR   +P   
Sbjct: 234 MLEQYQQHERPAPPAGDAEADRSDAARALLVTIRGRRMTARDVQRMVE--RRVKQMPAQL 291

Query: 259 --STTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNS 303
             + T H LRH+ AT LL   G D+ ++  ILGH  + TT +Y + ++
Sbjct: 292 RRAVTPHGLRHTAATVLLRQAGADVGTVADILGHADVGTTSVYLDPSA 339


>gi|227515102|ref|ZP_03945151.1| possible tyrosine recombinase [Lactobacillus fermentum ATCC 14931]
 gi|227086434|gb|EEI21746.1| possible tyrosine recombinase [Lactobacillus fermentum ATCC 14931]
 gi|299783228|gb|ADJ41226.1| Putative uncharacterized protein [Lactobacillus fermentum CECT
           5716]
          Length = 359

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 8/153 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A++ L+ G G+R+SE   +   ++     TL +  KG +   VP+ P     I  Y 
Sbjct: 189 RDIALVALILGTGIRVSETAGVDVNDLDLKGQTLEVTRKGGQRDAVPIAPWTMPYIQAYA 248

Query: 215 DL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
            +      P        L  + G + K ++    +R + +  R  G PL  T H LRH+ 
Sbjct: 249 TIRRQRYQPEKTERAFFLTHYHG-QTKRISVNGIERLVSKYSRAFGHPL--TPHKLRHTL 305

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           A+ L     D   +   LG    S T +YT+V+
Sbjct: 306 ASELYDVTKDQVLVAQQLGQKGTSATDLYTHVD 338


>gi|150401949|ref|YP_001329243.1| phage integrase family protein [Methanococcus maripaludis C7]
 gi|150032979|gb|ABR65092.1| phage integrase family protein [Methanococcus maripaludis C7]
          Length = 324

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 133/307 (43%), Gaps = 19/307 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +E+  ++     ER    +   + + D     +FLAF  + K    T+    +      +
Sbjct: 21  EEQNKYIMKFREEREFDNIKPSTIKNDITSLKVFLAFCEDAKKEPYTLSTHDFVIFFNML 80

Query: 76  SKRRTQKIGDRSLKRSLSGIKSF---LKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + RR   +  R+  R  + +K F   LKY   ++   ES I   R  K        +N  
Sbjct: 81  NNRRNCTV--RTQNRYFNLLKVFYRLLKYDNFKEFERES-IERKRFSKFEKKHYDTINFD 137

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               ++  ++L  S        R++ I+ +L+  G R SEALS+  ++   ++   RI+ 
Sbjct: 138 TYNRIIKEIILSNSRTR----LRDALIVRVLWETGCRRSEALSIRYKDCDFEKGRFRIRD 193

Query: 193 -KGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNI-QLPLFRGIRGKPLN--PGVFQRYI 247
            K  + R V +     + + +Y  +    D N  I Q  + +  +   L+    VF++ +
Sbjct: 194 TKTYEERTVVIAEETVEIVRDYIKENIRRDSNDYIFQNEMIQNGKRVKLDWITNVFKKAV 253

Query: 248 RQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           R+L+    +P       H+LRH  AT LL  G  +  ++ ILGH  L TT  Y+  +SK 
Sbjct: 254 RKLKEEGVIPEGKRIVIHSLRHGRATDLLDKGVPIDVVKEILGHRSLETTLYYS--HSKE 311

Query: 306 GGDWMME 312
             D M++
Sbjct: 312 RKDGMLD 318


>gi|189463345|ref|ZP_03012130.1| hypothetical protein BACCOP_04062 [Bacteroides coprocola DSM 17136]
 gi|189429964|gb|EDU98948.1| hypothetical protein BACCOP_04062 [Bacteroides coprocola DSM 17136]
          Length = 418

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 10/135 (7%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G+R  +   L    +       R+     K + V  +P   +A    Y+LC        +
Sbjct: 274 GIRHCDIQKLKWSEVEQFNGGYRLNFTQQKTKGVEYMPISEQA----YNLC--GEQKEGE 327

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           L +F G+   P +P    R +++     G+    T H  RHS+AT  L+ G D+ ++  +
Sbjct: 328 LLVFAGL---P-DPSWINRPVKKWVEAAGITKHITFHCFRHSYATLQLAGGTDIYTVSKM 383

Query: 287 LGHFRLSTTQIYTNV 301
           LGH  + TTQ+Y  V
Sbjct: 384 LGHTNVRTTQVYAKV 398


>gi|307309696|ref|ZP_07589348.1| integrase family protein [Sinorhizobium meliloti BL225C]
 gi|306899908|gb|EFN30531.1| integrase family protein [Sinorhizobium meliloti BL225C]
          Length = 355

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 18/158 (11%)

Query: 152 IDARNSAILYL---LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
           I +R+   LYL   L   G R+ EA++L   +I + ++T  +   G + R VPL    + 
Sbjct: 199 IASRSELYLYLSIFLVDTGARLGEAIALKWNDIHEGRATFWVTKSG-RSRTVPLTVRAKD 257

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           A+    D  P   +  I    +R +     ++ G            LG       H LRH
Sbjct: 258 ALKRVADRSPGPFS-RIDQQKYRAVWNAAKVDAG------------LGNEDDLVPHILRH 304

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           + A+ L+  G DLR +Q  LGH  L  T  Y ++ S +
Sbjct: 305 TCASRLVRGGIDLRRVQMWLGHQTLEMTMRYAHLASHD 342


>gi|237719265|ref|ZP_04549746.1| integrase [Bacteroides sp. 2_2_4]
 gi|229451644|gb|EEO57435.1| integrase [Bacteroides sp. 2_2_4]
          Length = 420

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 38/206 (18%)

Query: 102 LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
           L  +K   E   L+ + LK    +P  +N    L++V +V +                 +
Sbjct: 215 LNAKKTKVERGFLSEKELKSIEEVPLPVN----LSIVRDVFV-----------------F 253

Query: 162 LLYGCGLRISEALSLTPQNI---MDDQSTLRI-QGKGDKIRIVPLL-PSVRKAILEYYDL 216
            +Y  GL   +  +LT +NI   +D    L   + K D   ++PLL P+V   IL+ Y+ 
Sbjct: 254 AVY-TGLSFVDISNLTNENINVGIDKSLWLNYYRQKTDIHAMLPLLQPAV--CILKRYEA 310

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LS 275
                  N   P+       P N  V  RY++++ +  G+  + T H  RH+FAT + LS
Sbjct: 311 YHKGKRTNHVFPV-------PPNQ-VANRYLKKVAKEAGVEKNITFHMARHTFATTITLS 362

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNV 301
           +G  + ++  +LGH  + TTQIY  +
Sbjct: 363 HGIPIETVSKMLGHTSIKTTQIYAKI 388


>gi|219856542|ref|YP_002473664.1| hypothetical protein CKR_3199 [Clostridium kluyveri NBRC 12016]
 gi|219570266|dbj|BAH08250.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 204

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 16/184 (8%)

Query: 127 RALNEKQALTLVDNVL-LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           + L +++A +L   +   +TSH       R+  I  + Y CGLR+SE   L  Q+    +
Sbjct: 15  KYLTQQEAYSLFKTIENTYTSHS-----LRDLVIFRIAYRCGLRVSEIALLKMQDYNASK 69

Query: 186 STL---RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
             L   R++G  +       L S  K IL+ Y +   ++    Q+ LF   +  P++   
Sbjct: 70  GELYCRRLKGSNNN---TLRLDSKTKYILDKY-IVENNITSTSQV-LFSSQKNNPISRQT 124

Query: 243 FQRYIRQLRRYLGLPLSTTAH--TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               +++     G+   +  H   L+H+ A HL  +  D++ +Q  LGH  +S T+IY  
Sbjct: 125 LDYLMKKYCSMAGIEDKSKHHFHALKHTTAVHLAESDMDIKELQWWLGHKSVSNTEIYFQ 184

Query: 301 VNSK 304
             +K
Sbjct: 185 FTTK 188


>gi|160887404|ref|ZP_02068407.1| hypothetical protein BACOVA_05423 [Bacteroides ovatus ATCC 8483]
 gi|156107815|gb|EDO09560.1| hypothetical protein BACOVA_05423 [Bacteroides ovatus ATCC 8483]
          Length = 390

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 44/162 (27%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIR----------IVPL------- 202
            ++ C  GLR+S+   L P +I          GKG+ I           I+PL       
Sbjct: 240 FIFACFTGLRLSDMYRLAPMHIFKTAD-----GKGEYIDMEMQKTEKPVIIPLSEEAKRW 294

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           LP  R   + ++D+                    P    V  R + +     G+    + 
Sbjct: 295 LPKPRGNDIPFFDI--------------------PTTQTVIGRALHKWAEAAGIEKHISF 334

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           H  RH+F T +L+ G DL +   ++GH  + TT+IY  +  K
Sbjct: 335 HCSRHTFGTMMLTLGADLFTTSKLMGHSNIQTTEIYAKIVDK 376


>gi|331086494|ref|ZP_08335573.1| hypothetical protein HMPREF0987_01876 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410552|gb|EGG89980.1| hypothetical protein HMPREF0987_01876 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 409

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 42/177 (23%)

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRI--------QGKGD------------KIRIVPLLP 204
           G G R+SE + L  +++  D++ + I        + KG               RI+P+LP
Sbjct: 212 GTGCRVSEVVGLRWEDVHMDENYIEINHNMVYYQRDKGKCYFSVTSPKTTAGYRIIPMLP 271

Query: 205 SVRKAIL---EYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQL-------- 250
            V++AIL   +Y +        +I      +F    G   NP    R I+++        
Sbjct: 272 EVKQAILNEKKYQEEVGLTCQASIDGYTDFIFLNRNGFAHNPQTINRTIKRITLAYNEEE 331

Query: 251 ----RRYLGLPL---STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYT 299
                R    P+   + + H LRH+FAT    N  +L+ IQ I+GH  ++TT +IY 
Sbjct: 332 IERAERERRAPVLLPNFSCHNLRHTFATRYCENETNLKVIQEIMGHKDIATTMEIYA 388


>gi|330464887|ref|YP_004402630.1| integrase family protein [Verrucosispora maris AB-18-032]
 gi|328807858|gb|AEB42030.1| integrase family protein [Verrucosispora maris AB-18-032]
          Length = 406

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 112/273 (41%), Gaps = 52/273 (19%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--- 117
           + +R ++ T +  ++++R  +     SLK     + + L      KI  ++    ++   
Sbjct: 116 RPLRAINLTSVLEWLTRRLAEGTPSTSLKLYFELLDTVLNAAVTDKIIPDNPCDGVKLSQ 175

Query: 118 NLKKSNSLPRAL-NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
            L+  +  P+ +  E++ LTL+D V            AR  A ++L  G G R+ EAL +
Sbjct: 176 VLRGYSRAPKWVPTEREVLTLLDVV-----------PARYRAAIWLGAGQGYRLGEALGV 224

Query: 177 T--PQNIMDDQSTLRIQGKGDKIRIVP--------------------LLPSVRKAILEY- 213
              P+ I  ++S L +     ++R  P                    L P V + + E+ 
Sbjct: 225 EDGPRCIDQERSELHV---AQQLRYAPRQHDGFYLSEPKAGSSGTLDLDPVVGQVLAEHV 281

Query: 214 --YDLCPFDL-NLNIQLPLFRGI-------RGKPLNPGVFQRYIRQLRRYLGLPLS-TTA 262
             +   P +L +L    P+ R +       RG P     + R     R   G P    T 
Sbjct: 282 REFPPVPVELVDLTAGSPVRRSVPLLFTTTRGNPFTDRTWSREWADWRAAAGWPKEHGTF 341

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           H LRH FAT L++N  + + +Q +L H  L  T
Sbjct: 342 HALRHFFATTLITNHAEPQEVQRMLRHKTLRIT 374


>gi|167464569|ref|ZP_02329658.1| integrase family protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 321

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 20/165 (12%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            R++ I+ L+   GLR+SE ++LT  ++   + T+ +  KG+           R+  +E 
Sbjct: 151 VRDACIVSLILHSGLRVSEVVNLTLDDLDIKKKTIYVFRKGNNDGSFKTRVYFRQEAME- 209

Query: 214 YDLCPF-------------DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
            DL  +             +  L + +P  R   GK +     Q  + +  +  G P   
Sbjct: 210 -DLSRYLEIRETRYRPPKKEKALFLTIPNGRS-EGKMMTKRAMQEMVLKYAKRFGKPY-L 266

Query: 261 TAHTLRHSFAT-HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + H LRHSFAT + L N  DL   Q  LGH    TTQIY ++  K
Sbjct: 267 SVHKLRHSFATDYYLQN--DLYKTQEQLGHASSDTTQIYAHLTDK 309


>gi|116662215|ref|YP_829270.1| phage integrase family protein [Arthrobacter sp. FB24]
 gi|116612967|gb|ABK05689.1| phage integrase family protein [Arthrobacter sp. FB24]
          Length = 400

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 66/150 (44%), Gaps = 13/150 (8%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV----RKAI 210
           R+ A++      G R SE L LT   +      + +  KG +++ +P  P      R   
Sbjct: 215 RDRALVAFYVSSGARASELLGLTGDRVNVGDQLIGVYRKGGQLQWLPAAPDAFVWLRLYQ 274

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSF 269
           LE     P +       P++  +RG+P  P  ++     LRR   L  S  T H LRH+F
Sbjct: 275 LEGGVAGPDE-------PVWLTLRGEP-RPLTYEAMRAVLRRCNDLLGSNWTLHDLRHTF 326

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           A   L  G  L  +Q +LGH   +TT +Y 
Sbjct: 327 AIRALEGGMGLHEVQELLGHQSRTTTTVYA 356


>gi|330826867|ref|YP_004390170.1| integrase family protein [Alicycliphilus denitrificans K601]
 gi|329312239|gb|AEB86654.1| integrase family protein [Alicycliphilus denitrificans K601]
          Length = 310

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 94/238 (39%), Gaps = 37/238 (15%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL--------L 143
           L  ++ F ++ +     TE     +   +   + P     ++   L+   L         
Sbjct: 68  LGYVRGFARHHRASDPATEVPAPGLLPFRPGRARPYLYASEEIAGLLAQALQLPPVSGLR 127

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPL 202
           H +H T         +L LL   GLRI EAL L   ++  D   L ++G K  + R+VP+
Sbjct: 128 HRTHHT---------LLGLLSVTGLRIGEALRLRLDDVDLDAGVLTVRGTKFGQSRLVPI 178

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTT 261
             S  + +L  Y  C  +   + Q P F   R G PL+ G   R    L R +GL   T 
Sbjct: 179 HASTCE-VLAGYRRCRAEHLGDCQSPHFFVTRTGHPLDCGDVHRTFYHLSRAVGLRGPTD 237

Query: 262 A-----HTLRHSFATHLLSNGGDLRSIQSI----------LGHFRLSTTQIYTNVNSK 304
           +     H  RH FA   L N    RS Q I          LGH  ++ T  Y + + +
Sbjct: 238 SHGPRLHDFRHRFAVETLMNW--YRSEQDIERRLPVLSTYLGHVHVADTYWYLSAHPQ 293


>gi|327402602|ref|YP_004343440.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327318110|gb|AEA42602.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 405

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 16/147 (10%)

Query: 162 LLYGC--GLRISEALSLTPQNI---MDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD 215
            L+ C  GL  ++  SLTP++I   +D    L ++  K +    +PL P   + + +Y D
Sbjct: 250 FLFQCYTGLAFADLASLTPEHIQIGVDRHKWLFVERTKTNTDCRIPLFPITEEIVSKYKD 309

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
             P  +  N  LP+       P N  +   Y+++L    G+  +   H  RH++AT + L
Sbjct: 310 H-PERIIKNRLLPV-------PSNQKM-NAYLKELGAICGITKNIHTHLARHTYATTVTL 360

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301
            N   + ++  +LGH ++ TTQIY  V
Sbjct: 361 GNNIPIETVSKLLGHKKIQTTQIYAKV 387


>gi|325104620|ref|YP_004274274.1| integrase family protein [Pedobacter saltans DSM 12145]
 gi|324973468|gb|ADY52452.1| integrase family protein [Pedobacter saltans DSM 12145]
          Length = 405

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 78/162 (48%), Gaps = 22/162 (13%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQS----TLRIQGKGDKIRI----VPLLPSVRKAI 210
            ++ +Y  GLR S+ ++L  +N    ++    T+R  G+    +I    + +L   +  I
Sbjct: 239 FIFSVYAGGLRFSDVVTLKWENFNAKENRITKTIRKTGRQHSFKIGQQALDILQQYKSEI 298

Query: 211 LEYYDLC-P-------FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            +  D   P       F++N + +  +   I  K +  G   + +R+L + + LP + + 
Sbjct: 299 AKPSDFIFPIIEDQELFEMNKDTEAHI---INAKNILCG---QKLRRLGKAMELPFTLSF 352

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           H  RH+FAT+ L+NG  +  +  ++ H  +  TQIY  + S+
Sbjct: 353 HLSRHTFATNALNNGMRIEYVSKLMDHSDIGITQIYAKIISE 394


>gi|301308338|ref|ZP_07214292.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300833808|gb|EFK64424.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 380

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 62/146 (42%), Gaps = 14/146 (9%)

Query: 166 CGLRISEALSLTPQNIMDDQSTLR---IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           CGLRIS+   L  +++       R   +  K      +PL     K + E  D  P  L 
Sbjct: 237 CGLRISDIRKLRWRDLSMSGGQWRASVVMTKTIHPVYIPLSSQAVKWLPERGDCTPDGL- 295

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
                 +F G+     N G     ++      G+  + T HT RHS A  LL+ G D+ +
Sbjct: 296 ------VFGGLP----NEGNLCVNLKNWAEKAGVKKNVTFHTARHSCAVLLLTLGADIYT 345

Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGD 308
           +  ILGH  + +TQ+Y  +  K   D
Sbjct: 346 VSKILGHRSVRSTQVYAKIVDKKKDD 371


>gi|291559720|emb|CBL38520.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2]
          Length = 363

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 62/289 (21%), Positives = 126/289 (43%), Gaps = 35/289 (12%)

Query: 38  SYECDTRQFLIFLA-------------FYTEEKITIQTIRQLSYTE-IRAFISKRRTQKI 83
           +Y  D R F  FL              F   +   I+++    Y E ++ +IS+ + + +
Sbjct: 47  AYAYDLRVFFHFLIDENPAYRNYSVLDFKVSDLDKIESVDLEEYMEYLKVYISEEQHKHM 106

Query: 84  --GDRSLKRSLSGIKSFLKYLKKRKITTESNIL--NMRNLKKSNSLPRALNEKQALTLVD 139
              ++ + R +S ++SF  Y  KR++  ++  L  +M  +++   +   L   +  +L+D
Sbjct: 107 QNTEQGVFRKMSALRSFYGYFYKRQLIEKNPTLLVDMPKIREKEII--RLEADEVASLLD 164

Query: 140 NVLLHTSHET-------KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
            V     H T       +    R+ AI+ LL G G+R+SE + L   ++    + L +  
Sbjct: 165 FVEHGGDHLTGQKLAYYEKTKERDLAIITLLLGTGIRVSELVGLNVDDVDFRNNGLHLIR 224

Query: 193 KGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           KG K   V     V  A+ +Y +     + P + + +    LF  ++ + +     Q  +
Sbjct: 225 KGRKEMTVYFGNEVADALEQYIEGSRKLIIPKEGHED---ALFYSMQRRRIGVQAVQNLV 281

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           ++  + +      T H LR ++ T L     D+  +  +LGH  ++TT+
Sbjct: 282 KKYAKEVTPLKKITPHKLRSTYGTALYQETDDIYLVAEVLGHSDVNTTR 330


>gi|170680409|ref|YP_001746252.1| phage integrase family site specific recombinase [Escherichia coli
           SMS-3-5]
 gi|213417372|ref|ZP_03350514.1| site-specific recombinase, phage integrase family protein
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
 gi|170518127|gb|ACB16305.1| site-specific recombinase, phage integrase family [Escherichia coli
           SMS-3-5]
          Length = 326

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 128/309 (41%), Gaps = 51/309 (16%)

Query: 8   EIVSFE----LLKERQNWLQNLEIERGLSKL-------TLQSYECDTRQFLIFLAFYTEE 56
           E V+FE        ++ W       R LS+L         Q++E  T++F   L   T  
Sbjct: 34  EAVAFERYTIAYASQKEWAGQRADRRTLSELLNIWWKYHGQNHEHGTKEFNHLLK--TIS 91

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS---LSGIKSFLKYLKKRKITTESNI 113
            I    + ++S   +  + S R    I   ++ R    LSG+  F K ++  + + +  I
Sbjct: 92  GIGDIPVSRMSKRALMDYRSMRLRDGISAATINRDMYRLSGM--FTKLIQLDEFSGQHPI 149

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
             +  L ++N     L EK  +  + NVL          D  +  +  L    G R +E 
Sbjct: 150 HGLPPLAEANPEMTFL-EKAEIEKLLNVL----------DGDDLLVALLCLSTGGRWTEV 198

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
            +L P  I + + T  ++ K  K R VP+   + K + E      F ++           
Sbjct: 199 ATLKPAQITNCRVTF-LKTKNGKKRTVPISEELEKKVKEEASAKLFKVD----------- 246

Query: 234 RGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                    ++++   LRR    +P +   H LRH+FA+H + NGG++ ++Q ILGH  +
Sbjct: 247 ---------YEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASI 297

Query: 293 STTQIYTNV 301
             T  Y ++
Sbjct: 298 QQTMAYAHL 306


>gi|312862667|ref|ZP_07722907.1| site-specific tyrosine recombinase XerS [Streptococcus vestibularis
           F0396]
 gi|311101527|gb|EFQ59730.1| site-specific tyrosine recombinase XerS [Streptococcus vestibularis
           F0396]
          Length = 356

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 119/292 (40%), Gaps = 44/292 (15%)

Query: 58  ITIQTIRQLSYTEIRAFI----------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI 107
           I I+T+  L+  ++ +F+          +  + Q +   ++ R+LS + S  KYL +   
Sbjct: 66  IDIKTLENLTKKDMESFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVE 125

Query: 108 TTESNILNMRNLKKSNSL--------PRALNEKQALTLVDNVL-----LHTSHETKWID- 153
             +      RN+ K  S          RA N KQ L L D  +     +   +E K  + 
Sbjct: 126 GPDGEPYFYRNVMKKVSTKKKKETLAARAENIKQKLFLGDETMDFLDYVENEYEVKLSNR 185

Query: 154 ---------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
                     R+ AI+ LL   G+R+SEA++L  ++I      + +  KG K   V +  
Sbjct: 186 AKSSFYKNKERDLAIIALLLASGVRLSEAVNLDLKDINLKMMVIDVTRKGGKRDSVNVAS 245

Query: 205 SVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
             R  +  Y ++          +L + L  +RG+  + ++    ++ + +  +     + 
Sbjct: 246 FARPYLENYLNIRDKRYKAEKQDLALFLTEYRGVPNR-IDASSIEKMVAKYSQ--DFKIR 302

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGD 308
            T H LRH+ AT L         +   LGH     T +YT++     KN  D
Sbjct: 303 VTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|301164997|emb|CBW24563.1| putative bacteriophage integrase [Bacteroides fragilis 638R]
          Length = 452

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 14/149 (9%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLL-PSVR--------K 208
             +  + CGLR+ + ++L  ++I   +  LR I  K +K  ++PL  P++R        +
Sbjct: 279 FFFAFHACGLRVVDVMTLQWKHIDFARKELRKIMIKTNKRHVIPLTEPALRILQQWQEKR 338

Query: 209 AILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           A   Y +DL    L+L+    L++             + +  +   +GLP S + H  RH
Sbjct: 339 AGCRYVFDLVKETLDLDDAEALYKARNNAT---KCINQSLAVVGEQIGLPFSLSMHAARH 395

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           SFA   L+ G  +  +  +LGH     T+
Sbjct: 396 SFAVFALNKGLSMSVVSRLLGHGSTDVTE 424


>gi|291531297|emb|CBK96882.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 476

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 113/263 (42%), Gaps = 39/263 (14%)

Query: 65  QLSYTEIRAFISKRRT-------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           +LS ++++ F +K +T       +  G     R++ GI +  +   +R +  +  ++   
Sbjct: 117 RLSQSDLQQFYAKEKTDGRKLHAKTYGKGLSDRTIRGIHANCRTALQRAV--QEGLIRTN 174

Query: 118 NLKKSNSLPRALNEKQALTLVDNV-LLHTSHETKWIDARNSAILYLL-YGCGLRISEALS 175
                  LP+   E Q LT  + +  LH + E    +      L+LL  G G+R  E L+
Sbjct: 175 PAVGCKLLPKKAREMQVLTQNEIIRFLHQAKEEGCYE------LFLLELGTGMRRGEILA 228

Query: 176 LTPQNIMDDQSTLRIQGK---------------GDKIRIVPLLPSVRKAILEYYDLCPFD 220
           L   ++      LRI+ +                  IR V L PS+ K ++ Y +    D
Sbjct: 229 LKWSDLNFATGELRIERQVYIIKAEVIISAPKTKASIRTVILPPSLLKTLVAYKET--VD 286

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
                  P   G   +P NP   ++ ++ +    G       H LRH+FAT  L +G D+
Sbjct: 287 SEWMFPSPTDNG---RPRNPSSVRKRLQLILERAGCK-KVRFHDLRHTFATMALEHGMDV 342

Query: 281 RSIQSILGHFRLSTT-QIYTNVN 302
           +++ + +GH   +TT  IY+++ 
Sbjct: 343 KTLSATIGHVSSATTLDIYSHIT 365


>gi|212694197|ref|ZP_03302325.1| hypothetical protein BACDOR_03723 [Bacteroides dorei DSM 17855]
 gi|212663263|gb|EEB23837.1| hypothetical protein BACDOR_03723 [Bacteroides dorei DSM 17855]
          Length = 229

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 30/149 (20%)

Query: 163 LYGC--GLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           L+ C  GLR+S+ + L  +NI+   D    + I  K  K     +LP   +A+     LC
Sbjct: 76  LFSCLTGLRLSDCIRLQWENIVKLADGGWGMDIITK--KTSTAAILPISEEAL----QLC 129

Query: 218 PFDLNLNIQLPLFRGIRG-----KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                         G RG     K L       Y++   +  G+    T H  RH+FAT 
Sbjct: 130 --------------GERGTGQVFKNLTNSTVALYLKPWIKASGIEKHITFHCFRHTFATL 175

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            L+ G D+ ++  +L H  L+TTQ+Y +V
Sbjct: 176 QLAEGTDIYTVSKLLTHSNLATTQVYADV 204


>gi|109948086|ref|YP_665314.1| bacteriophage-related integrase [Helicobacter acinonychis str.
           Sheeba]
 gi|109715307|emb|CAK00315.1| bacteriophage-related integrase [Helicobacter acinonychis str.
           Sheeba]
          Length = 378

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 119/282 (42%), Gaps = 44/282 (15%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GL   +L S E       IF A   +E   +Q I +    E  A   ++  Q+    +LK
Sbjct: 102 GLKNTSLHSLEIVFNS--IFSAMGLKESAKLQKITK----EAIAKYHEQALQRYKKNTLK 155

Query: 90  RSLSGIKSFLKYLKKRKITTESN---ILNMRNLKKSNSL-PRALNEKQALTLVDNVLLHT 145
              + +KSFL + +      E N    + ++N K++  + P +L E +A+  + N     
Sbjct: 156 TQHANLKSFLAFCESEGYL-EKNPYFAVTLKNAKEAKKIEPFSLEEVEAI--IKNA---P 209

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK------------ 193
           S   K       A L + +  G+R  E L+LT ++I  D  T+ I               
Sbjct: 210 SLSLK-------AFLMVAFLTGMRTGEQLALTWEDIDFDHQTISINKSLNEWGQITSPKN 262

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            + +R V LL    K + E     P          +F G+   P    VFQR  R+L + 
Sbjct: 263 QNSVREVDLLEPAAKILKELKKSEPAGKKF-----VFIGM---PRRTSVFQRRFRELLKA 314

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           L L      +T RH+FA+ +LS G +   +  +LGH  L+TT
Sbjct: 315 LDLK-DRKLYTTRHTFASLMLSQGEEPMWVSKMLGHKDLNTT 355


>gi|330399609|ref|YP_004030707.1| hypothetical protein RBRH_03374 [Burkholderia rhizoxinica HKI 454]
 gi|312170346|emb|CBW77385.1| Hypothetical protein RBRH_03374 [Burkholderia rhizoxinica HKI 454]
          Length = 483

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 67/164 (40%), Gaps = 28/164 (17%)

Query: 162 LLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           L Y  GLR+SE    T  +          DQ  L I GKG + R VP  P +   +  Y 
Sbjct: 286 LFYLQGLRLSEVAHGTMGDFSRRLGPDGHDQWWLDIVGKGQRARRVPASPELIVELARYR 345

Query: 215 DLC--PFDLNLNIQLPL---FRGIRGKPLNPGVFQRYIRQLRRYLGLPLST--------- 260
             C  P         PL   FRG R + L+       I+++ R     L           
Sbjct: 346 QACGLPSLPRRAEDTPLVVPFRGPR-RGLSRSALHDAIKRIFRDAASWLRARGPAFADRA 404

Query: 261 ------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                 +AH LRH+  +H    G DLR+++  LGH  L+TT +Y
Sbjct: 405 DELVRASAHWLRHTAGSHQADGGLDLRTVRDNLGHVSLTTTSLY 448


>gi|167991593|ref|ZP_02572692.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205330049|gb|EDZ16813.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
          Length = 326

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 243 FQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           ++++   LRR    +P +   H LRH+FA+H + NGG++ ++Q ILGH  +  T  Y ++
Sbjct: 247 YEKFCEILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQTMTYAHL 306


>gi|53715557|ref|YP_101549.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60683504|ref|YP_213648.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
 gi|52218422|dbj|BAD51015.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60494938|emb|CAH09754.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
          Length = 452

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 14/149 (9%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLL-PSVR--------K 208
             +  + CGLR+ + ++L  ++I   +  LR I  K +K  ++PL  P++R        +
Sbjct: 279 FFFAFHACGLRVVDVMTLQWKHIDFARKELRKIMIKTNKRHVIPLTEPALRILQQWQEKR 338

Query: 209 AILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           A   Y +DL    L+L+    L++             + +  +   +GLP S + H  RH
Sbjct: 339 AGCRYVFDLVKETLDLDDAEALYKARNNAT---KCINQSLAVVGEQIGLPFSLSMHAARH 395

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           SFA   L+ G  +  +  +LGH     T+
Sbjct: 396 SFAVFALNKGLSMSVVSRLLGHGSTDVTE 424


>gi|300703260|ref|YP_003744862.1| phage integrase [Ralstonia solanacearum CFBP2957]
 gi|299070923|emb|CBJ42228.1| putative phage integrase [Ralstonia solanacearum CFBP2957]
          Length = 288

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 62/137 (45%), Gaps = 19/137 (13%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQST---------LRIQGKGDKIRIVPLLPS 205
           RN +++ LL   G RI+EAL LT  NI D  S          + + GKG K R VP+   
Sbjct: 83  RNISLIELLICSGFRIAEALGLTIYNIPDPDSAAYAGRAVVPVVVIGKGRKKRSVPIPKR 142

Query: 206 VRKAILEYYDLCPFDLNLNIQ--------LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           V +AI  Y D          Q          LF    G+PL+  + + + +Q     GL 
Sbjct: 143 VIRAINFYIDEDRKVAAAKYQSRNRGKEATRLFLAKTGEPLSVRMVEEWFQQTSEATGLK 202

Query: 258 LSTTAHTLRHSFATHLL 274
           L  T H  RH++AT +L
Sbjct: 203 L--TPHGCRHTYATIML 217


>gi|150010080|ref|YP_001304823.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149938504|gb|ABR45201.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 402

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 31/152 (20%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
            ++GC  G+   +  +LT  NI++   +  I  K  K  +                  PF
Sbjct: 248 FIFGCWTGISFVDIKNLTTDNIVELNGSRWIVSKRQKTGV------------------PF 289

Query: 220 DLNLNIQLPLFRGIRGKPLNPG----------VFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
            + L + +P     R KP   G          +  R I+ + +  G+  + + H  RHSF
Sbjct: 290 QIKL-MDIPAQIIERNKPFRNGKNLFNINSYDMVNRRIKTVAKMCGIEKNISFHLSRHSF 348

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           A   L+ G  + S+  ILGH  ++TTQIY  V
Sbjct: 349 AVLALNYGMPIESVSKILGHTNITTTQIYAKV 380


>gi|94266109|ref|ZP_01289825.1| Phage integrase [delta proteobacterium MLMS-1]
 gi|93453327|gb|EAT03764.1| Phage integrase [delta proteobacterium MLMS-1]
          Length = 379

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 26/151 (17%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCP 218
           L LL GC  R SE L+   ++    + + RI   K  K R VPL  +  + +     L P
Sbjct: 235 LLLLLGC--RKSELLNSRWEDFDLARRSWRIPLSKSGKARYVPLSTAALEVLASIPRLSP 292

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY------LGLPLSTTAHTLRHSFATH 272
           + +                 NP   Q ++   R +       GLP     H LRHSFA+ 
Sbjct: 293 YVVP----------------NPKTLQPFVSVFRSWDTARKKAGLP-DVRMHDLRHSFASF 335

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           L+++G  +  +  +LGH +L TTQ Y+++++
Sbjct: 336 LVNSGRSIYEVSQLLGHSQLKTTQRYSHLSN 366


>gi|150019248|ref|YP_001311502.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149905713|gb|ABR36546.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 199

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 85/184 (46%), Gaps = 16/184 (8%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L +K+ L+L + +     +  K    R+ AI  L Y CGLR SE   L  +N   ++ 
Sbjct: 10  KYLTQKEVLSLFNAI----ENSGKLHSTRDLAIFRLAYRCGLRASEISMLKLENYNINKG 65

Query: 187 TL---RIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
            +   R++G K + +R    L    K++L+ Y +   ++    Q  +F   + KP++   
Sbjct: 66  EIYCKRLKGSKNNTLR----LDEKTKSVLDKY-ITENEITSESQ-TIFTSQKNKPISRQT 119

Query: 243 FQRYIRQLRRYLGLPLSTTAH--TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                +Q      +   +  H  T++H+ A HL     D++ +Q  LGH  ++ T+IY  
Sbjct: 120 LDHLTKQYFSMASIQDKSKHHFHTIKHTTAVHLAECDMDIKELQWWLGHKSVTNTEIYFQ 179

Query: 301 VNSK 304
             +K
Sbjct: 180 FTTK 183


>gi|300938277|ref|ZP_07153042.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 21-1]
 gi|300456732|gb|EFK20225.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 21-1]
          Length = 184

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 64/151 (42%), Gaps = 1/151 (0%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILE 212
           AR+  ++ L Y  G+RISE L L  Q++  ++  + I+   +    V PL    R+A+  
Sbjct: 12  ARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVER 71

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +          +    +F   RG  L+     R IR      G    T  H LRH+    
Sbjct: 72  WTQERANWKGADWTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYE 131

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           L   G D R IQ  LGH  +  T  YT  N+
Sbjct: 132 LAERGADTRLIQDYLGHRNIRHTVRYTASNA 162


>gi|257064282|ref|YP_003143954.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
 gi|256791935|gb|ACV22605.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
          Length = 398

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 85/213 (39%), Gaps = 29/213 (13%)

Query: 118 NLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSA----------ILYLLYGC 166
           N   S S PR A  E +ALT  +  +L    E +  D    A            +L    
Sbjct: 164 NPAASASKPRPARAEARALTEGEISILAAELEARMADGSRDADGIRRRTVAFAAWLALNT 223

Query: 167 GLRISEALSLTPQNI---MDD---QSTLRIQGKG----------DKIRIVPLLPSVRKAI 210
           G+R  EA +L+  ++   + D     T+     G            +R V + PS  +A 
Sbjct: 224 GVRCGEACALSRSDVSLPLGDLYVHCTMTEPAGGPPARSRAKTASSVRHVLMGPSAAQAA 283

Query: 211 LEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
            E+       L    +  PL     G  + P    R    LR  +GLP  T  HTLRH+ 
Sbjct: 284 AEHIAWQDSWLPAARRDAPLLCAPDGSWMRPSAVSRGFSALRDEVGLPRDTHFHTLRHTH 343

Query: 270 ATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNV 301
           ATHLL  G  +  +   LGH +++ T + Y +V
Sbjct: 344 ATHLLREGVPMNEVSRRLGHSKVALTLEWYGHV 376


>gi|221215358|ref|ZP_03588323.1| phage integrase family protein [Burkholderia multivorans CGD1]
 gi|221164790|gb|EED97271.1| phage integrase family protein [Burkholderia multivorans CGD1]
          Length = 613

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 75/352 (21%), Positives = 130/352 (36%), Gaps = 99/352 (28%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +ERG++  ++Q  +C+   +  FLA  +            +++   A  +  R +  G  
Sbjct: 270 VERGVALSSMQVEDCEA--YKAFLAAPSA-----------AFSGPPASRASGRWRPFGPG 316

Query: 87  SLK-----RSLSGIKSFLKYLKKRK---------ITTESNILNMRNLKKSNSLPRALNEK 132
            L       ++  I++  ++L K +         +     + + + ++ S +LP  L  +
Sbjct: 317 GLSLESQLYAVRAIRAAFEWLVKVRYLAGNPWAAVVDPKPVKHAKRMQVSRALPVDLWAR 376

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA-------LSLTPQNI-MDD 184
               L D       H ++W  AR  A+L L+   GLRI+EA       L L P +  +  
Sbjct: 377 TRAALADWSEGSGPHASRWRAAR--ALLLLMGDAGLRIAEATAASRDALELHPADGEIPA 434

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN---------LNIQLPLF----- 230
              LR+ GK  K R VPL  +   A+  ++     D +         + +  PL      
Sbjct: 435 TWELRVIGKRRKERFVPLSGTCIDALRAHWRDRGMDFDAADGTGRSDVALIAPLVIPRTP 494

Query: 231 --------------------------RGIRGKPLNPGVFQRYIRQL------------RR 252
                                     RG RG      + Q  + QL            RR
Sbjct: 495 RAREKFARNDDASNGAAQKTGTGYSVRGARG------LAQWAVEQLLEKMPDLTEPERRR 548

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            +G+    + H  RH+F T  ++    L  +Q +LGH  L TT +Y     K
Sbjct: 549 LVGV----SPHAFRHTFGTQSVATDVPLDVVQQLLGHASLQTTSVYVTAEEK 596


>gi|315647380|ref|ZP_07900493.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family protein [Paenibacillus vortex V453]
 gi|315277582|gb|EFU40911.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family protein [Paenibacillus vortex V453]
          Length = 202

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 14/147 (9%)

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
           ++  RN  IL      G+R  E  +L+  ++ D  S ++I GKG+K R + + P ++K I
Sbjct: 31  YLSLRNKLILMFFVDLGIRNLELCTLSSLDVRD--SVIKIHGKGNKERHLYISPLLKKYI 88

Query: 211 LEYYDL--CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ------LRRYLGLPLSTTA 262
           ++Y  +    F   +      F    GK L     +  +++      +R+++      + 
Sbjct: 89  IKYERVKEAYFKDKIMTDSSFFLSQNGKTLTVVAIEVVVKKAGAEAKVRKHI----RCSP 144

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGH 289
           HTLRH +A   L  G D+ S+  +LGH
Sbjct: 145 HTLRHYYAQKQLRLGLDVYSLSRLLGH 171


>gi|293372242|ref|ZP_06618627.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292632684|gb|EFF51277.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 436

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 38/206 (18%)

Query: 102 LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
           L  +K   E   L+ + LK    +P  +N    L++V +V +                 +
Sbjct: 231 LNAKKTKVERGFLSEKELKSIEEVPLPVN----LSIVRDVFV-----------------F 269

Query: 162 LLYGCGLRISEALSLTPQNI---MDDQSTLRI-QGKGDKIRIVPLL-PSVRKAILEYYDL 216
            +Y  GL   +  +LT +NI   +D    L   + K D   ++PLL P+V   IL+ Y+ 
Sbjct: 270 AVY-TGLSFVDISNLTNENINVGIDKSLWLNYYRQKTDIHAMLPLLQPAV--CILKRYEA 326

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LS 275
                  N   P+       P N  V  RY++++ +  G+  + T H  RH+FAT + LS
Sbjct: 327 YHKGKRTNHVFPV-------PPNQ-VANRYLKKVAKEAGVEKNITFHMARHTFATTITLS 378

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNV 301
           +G  + ++  +LGH  + TTQIY  +
Sbjct: 379 HGIPIETVSKMLGHTSIKTTQIYAKI 404


>gi|293373142|ref|ZP_06619506.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292631913|gb|EFF50527.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 386

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 36/57 (63%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +Y+R+L+   G+    T H  RH+ A+  +S G D+ +++ +LGH  +++T++Y  V
Sbjct: 313 KYVRRLKEKAGIEKDLTYHCSRHTTASLAISAGADISAVKDVLGHGSITSTEVYAKV 369


>gi|259419438|ref|ZP_05743354.1| putative transposase B [Silicibacter sp. TrichCH4B]
 gi|259344679|gb|EEW56566.1| putative transposase B [Silicibacter sp. TrichCH4B]
          Length = 695

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 131/315 (41%), Gaps = 52/315 (16%)

Query: 25  LEIER-GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           LEI+R  LS++T+       R+F+ FL  +  +   I+    ++   + AF+   R+Q +
Sbjct: 254 LEIKRTSLSRVTVDHCAVSLRRFVDFLVRHDPK---IEKFANVTSEVMTAFLIDLRSQ-V 309

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESN-----------ILNMRNLKK-SNSLPRALNE 131
           G R+ KR+LS      + L   +  +E             +LN R+L +    LPR +  
Sbjct: 310 GART-KRTLSITAQRSRALHVAQFLSEGAAWEWPDFPTRPVLNTRDLPRLPQRLPRYIPA 368

Query: 132 KQALTLVDNVL-LHTSHE------TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           +Q   L++ V  L    +       +W  AR + I  L   C       L   P    D 
Sbjct: 369 EQLGPLMEEVRKLPCDFQRAAILTARWSGARRTEIARLPVDC-------LDAYP----DG 417

Query: 185 QSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL--------CPFDLNLNIQLPLFRGIRG 235
              LRI  GK  + R+VPL P   + + +  +L         P D      + L    RG
Sbjct: 418 TPRLRIPAGKTYRERLVPLHPEAAETLRKVIELRAKSDERPVP-DARTGQYVKLLFYRRG 476

Query: 236 KPLNPG-VFQRYIRQLRRYLGLPLS-----TTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
             ++P  +F   ++ +   LGL         +AH  RH+  T L   G  +++I  +LGH
Sbjct: 477 VAISPDYLFNYPLKDISHRLGLIDGKGQNLISAHRFRHTVGTELAEGGARMQTIMDVLGH 536

Query: 290 FRLSTTQIYTNVNSK 304
                + +Y  V+ +
Sbjct: 537 QSPHMSMVYIRVSDE 551


>gi|238786957|ref|ZP_04630757.1| Integrase [Yersinia frederiksenii ATCC 33641]
 gi|238724745|gb|EEQ16385.1| Integrase [Yersinia frederiksenii ATCC 33641]
          Length = 334

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 60/142 (42%), Gaps = 21/142 (14%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I+ L    G R  EA  +    I+  + T  I  KG K R VP+   + K I        
Sbjct: 193 IVRLCLATGARWGEAQDMKQSQILPSRVTY-INTKGKKNRTVPISEKLFKRI-------- 243

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
                    P  RG    P +   F+  ++  R  + LP     H LRH+FA+H +  GG
Sbjct: 244 ---------PKNRGALFTP-SYDAFKHALK--RAAIELPKGQRTHVLRHTFASHFMMGGG 291

Query: 279 DLRSIQSILGHFRLSTTQIYTN 300
           ++  +Q ILGH  +  T  Y +
Sbjct: 292 NILVLQQILGHSTILMTMRYAH 313


>gi|255527617|ref|ZP_05394479.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296187660|ref|ZP_06856054.1| site-specific recombinase, phage integrase family [Clostridium
           carboxidivorans P7]
 gi|255508689|gb|EET85067.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296047617|gb|EFG87057.1| site-specific recombinase, phage integrase family [Clostridium
           carboxidivorans P7]
          Length = 329

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 12/157 (7%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           + R+ AI+ LL   G+R+ E + L   +I  ++    ++GKGDK R V    +  K  L+
Sbjct: 171 EIRDLAIIDLLNSTGIRVGELVKLNIDDIDFNERECIVEGKGDKQRRV-YFDARTKIHLQ 229

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLN----PGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            Y     D N  + + L      +P N     GV  R +R L + L +      H  R +
Sbjct: 230 NYINSRVDNNRALFVSLI-----EPYNRLNISGVEIR-MRSLGKKLNIN-KVHPHKFRRT 282

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            AT  +  G  +  +Q +LGH ++ TT  Y  VN  N
Sbjct: 283 LATRAIDKGMPIEQVQQLLGHQKIDTTLQYAMVNQNN 319


>gi|254039131|ref|ZP_04873181.1| integrase [Escherichia sp. 1_1_43]
 gi|226838567|gb|EEH70596.1| integrase [Escherichia sp. 1_1_43]
          Length = 326

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 128/309 (41%), Gaps = 51/309 (16%)

Query: 8   EIVSFE----LLKERQNWLQNLEIERGLSKL-------TLQSYECDTRQFLIFLAFYTEE 56
           E V+FE        ++ W       R LS+L         Q++E  T++F   L   T  
Sbjct: 34  EAVAFERYTIAYASQKEWAGQRADRRTLSELLDIWWKYHGQNHEHGTKEFNHLLK--TIS 91

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS---LSGIKSFLKYLKKRKITTESNI 113
            I    + ++S   +  + S R    I   ++ R    LSG+  F K ++  + + +  I
Sbjct: 92  GIGDIPVSRMSKRALMDYRSMRLRDGISAATINRDMYRLSGM--FTKLIQLDEFSGQHPI 149

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
             +  L ++N     L EK  +  + NVL          D  +  +  L    G R +E 
Sbjct: 150 HGLPPLAEANPEMTFL-EKAEIEKLLNVL----------DGDDLLVALLCLSTGGRWTEV 198

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
            +L P  I + + T  ++ K  K R VP+   + K + E      F ++           
Sbjct: 199 ATLKPAQITNCRVTF-LKTKNGKKRTVPISEELEKKVKEEASAKLFKVD----------- 246

Query: 234 RGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                    ++++   LRR    +P +   H LRH+FA+H + NGG++ ++Q ILGH  +
Sbjct: 247 ---------YEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASI 297

Query: 293 STTQIYTNV 301
             T  Y ++
Sbjct: 298 QQTMAYAHL 306


>gi|295135380|ref|YP_003586056.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
 gi|294983395|gb|ADF53860.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
          Length = 232

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 16/147 (10%)

Query: 162 LLYGC--GLRISEALSLTPQNI---MDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD 215
            ++ C  GL  S+   L+  +I   +D +  +R +  K   +  +P+LP V + IL+ Y 
Sbjct: 46  FIFSCFTGLAYSDVKKLSNSDITIGIDGEKWIRTKRTKTKTLSSIPILP-VAEEILDRYK 104

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
             P   N +  LP+    +           +++++     +    T H  RH+FAT + L
Sbjct: 105 NHPEVKNSDFILPVLSNQKS--------NAFLKEIALMCDIKKPLTTHVARHTFATTITL 156

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +NG  + S+  +LGH  L TTQ Y  +
Sbjct: 157 TNGVPIESVSKMLGHKDLRTTQHYAKI 183


>gi|228469599|ref|ZP_04054586.1| integrase [Porphyromonas uenonis 60-3]
 gi|228308852|gb|EEK17539.1| integrase [Porphyromonas uenonis 60-3]
          Length = 261

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           NP V Q+ +++++R  G+    T H  RH+FAT  L+ G  L ++ S+LGH  LSTT+IY
Sbjct: 177 NPYVNQQ-LKEIQRLSGVKRVLTYHLARHTFATLALTKGVSLDTVGSVLGHSCLSTTRIY 235

Query: 299 TNV 301
             V
Sbjct: 236 ARV 238


>gi|213583107|ref|ZP_03364933.1| Tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 48

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 36/50 (72%), Gaps = 4/50 (8%)

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           ATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q HP
Sbjct: 1   ATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQHHP 46


>gi|81428201|ref|YP_395201.1| site-specific recombinase, prophage lsa1 integrase [Lactobacillus
           sakei subsp. sakei 23K]
 gi|78609843|emb|CAI54890.1| Site-specific recombinase, prophage lsa1 integrase [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 385

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 94/216 (43%), Gaps = 37/216 (17%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC----GLRISEALSLTPQ 179
           ++P+ L+++  L   D   L T      ID  N    Y L+      G+R  E LSLT  
Sbjct: 161 TMPKKLDKEDTLNFWDKDQLKTFFNG--IDPVNDLEKYTLFRVLAFTGIRRGECLSLTWD 218

Query: 180 NIMDDQSTLRIQG---KGDK-------------IRIVPLLPS----VRKAILE---YYDL 216
           ++   ++TL I      GDK              R++ L  S    ++K  LE    Y +
Sbjct: 219 DLNVQKATLDINKTLTHGDKGRLLIQPTKTKKGTRVISLDESTLLYLKKWHLEQRRMYLM 278

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-----RRYLGLPLSTTAHTLRHSFAT 271
             +++N + QL +F   +    +     +++R L     +    LP S T H  RHS A+
Sbjct: 279 LGYNINKSNQL-IFATSKNTFKSLNTPSKWLRALIDDANKSGANLP-SITVHGFRHSHAS 336

Query: 272 HLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNG 306
            L S G  ++ +Q  LGH    TT  IYT+V  K G
Sbjct: 337 ALFSAGASIKEVQERLGHEDAQTTLNIYTHVTEKQG 372


>gi|170717950|ref|YP_001784999.1| phage integrase family protein [Haemophilus somnus 2336]
 gi|168826079|gb|ACA31450.1| phage integrase family protein [Haemophilus somnus 2336]
          Length = 299

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 18/156 (11%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK---IRIVP----LLPSVRKAI 210
           A++Y L    +R S+ L L   +I      + I+ + +K      +P    L P +++ I
Sbjct: 136 ALIYTLKYTAIRQSQLLQLKISDIDMTSKIINIRAETNKNHEHHEIPISDKLYPYLKRLI 195

Query: 211 LEY------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           LE        D   F++N   +  L    R K +  G    + R +  ++G   + T+H 
Sbjct: 196 LESRARSTSSDEQLFNIN---RFSLVTTSRNKKMTEGQLVHFFRHISEFIGF--TVTSHR 250

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            RH+ AT +L   GD+ +++ +LGH  L+ T  Y +
Sbjct: 251 FRHTTATEVLKQSGDIYAVKQLLGHKDLTVTLTYIH 286


>gi|301328247|ref|ZP_07221367.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 78-1]
 gi|300845276|gb|EFK73036.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 78-1]
          Length = 336

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 22/151 (14%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           +D  +  +  L    G R +E  +L P  I + + T  ++ K  K R VP+   + K + 
Sbjct: 187 LDGDDLLVALLCLSTGGRWTEVATLKPAQITNCRVTF-LKTKNGKKRTVPISEELEKKVK 245

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFA 270
           E      F ++                    ++++   LRR    +P +   H LRH+FA
Sbjct: 246 EEASAKLFKVD--------------------YEKFCGILRRVKPDIPPNQATHILRHTFA 285

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +H + NGG++ ++Q ILGH  +  T  Y ++
Sbjct: 286 SHFMMNGGNIIALQQILGHASIQQTMAYAHL 316


>gi|228942688|ref|ZP_04105218.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228976695|ref|ZP_04137123.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228982383|ref|ZP_04142647.1| Transposase A from transposon Tn554 [Bacillus thuringiensis Bt407]
 gi|228777336|gb|EEM25639.1| Transposase A from transposon Tn554 [Bacillus thuringiensis Bt407]
 gi|228783024|gb|EEM31175.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228816981|gb|EEM63076.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326943312|gb|AEA19207.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           chinensis CT-43]
 gi|326943809|gb|AEA19699.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 372

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 104/236 (44%), Gaps = 34/236 (14%)

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           S    K FL +  K K+  ++ IL    LK S    + L+  +   L+D           
Sbjct: 140 SRGNFKGFLHHTFKNKMK-DTKILK---LKVSKETLKVLSPDEVQILIDAC--------- 186

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-----KIRIV--PLL 203
             + R+  +L LLY  G+RI EALSL   +I+     + IQ +G+     +I+ V  P  
Sbjct: 187 -CNTRDKFLLVLLYETGMRIGEALSLHLSDIVPTIRKIHIQDRGELINGAEIKTVCSPRT 245

Query: 204 PSVRKAILEYYDLCPFDLNLN------IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
             + K + + Y     +++ +      + + L    +G PL+    Q   ++L+      
Sbjct: 246 LDISKELADLYRRYILEIHTDEIDSDFVFIKLTGDRKGTPLDYASVQSLFKRLK--TKTK 303

Query: 258 LSTTAHTLRHSFATHLLSNGGDLR--SIQSILGHFRLSTT-QIYTNVNSKN-GGDW 309
           +  T H LRH+  T L    G++R  ++Q   GH  + TT Q+Y +   ++   DW
Sbjct: 304 MEVTPHMLRHTNITELWKT-GEMRPETLQKRAGHAHIQTTMQMYVHPTMEDIQEDW 358


>gi|228471472|ref|ZP_04056256.1| integrase [Porphyromonas uenonis 60-3]
 gi|228306725|gb|EEK15871.1| integrase [Porphyromonas uenonis 60-3]
          Length = 254

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           NP V Q+ +++++R  G+    T H  RH+FAT  L+ G  L ++ S+LGH  LSTT+IY
Sbjct: 170 NPYVNQQ-LKEIQRLSGVKRVLTYHLARHTFATLALTKGVSLDTVGSVLGHSCLSTTRIY 228

Query: 299 TNV 301
             V
Sbjct: 229 ARV 231


>gi|172064743|ref|YP_001812393.1| integrase family protein [Burkholderia ambifaria MC40-6]
 gi|171998228|gb|ACB69144.1| integrase family protein [Burkholderia ambifaria MC40-6]
          Length = 236

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 82/202 (40%), Gaps = 39/202 (19%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------GKG 194
           LL  + ET     R++ IL L   CG+RI+E   L   +++    T R +        KG
Sbjct: 24  LLAVTEETSRFPERDTLILLLGVTCGMRITEIARLEVHHVLSRSGTRREEIALPGSITKG 83

Query: 195 DKIRIVPLL-PSVRKAILEYYDL------------------------------CPFDLNL 223
            + R V L  P   +A+  Y +                                PF+L++
Sbjct: 84  CRPRCVFLSHPRALEAVDRYVEWRYRRGAGVLLDRREYRGLMPHTRLILTQKGGPFELSV 143

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             ++  F G   + L     Q Y+  L R  GL    ++H+ R +FA+ L++ G  L ++
Sbjct: 144 KRRMN-FAGEPVEYLAADSLQSYVTSLYRAAGLRAGYSSHSGRRTFASRLVAQGHSLETV 202

Query: 284 QSILGHFRLSTTQIYTNVNSKN 305
           Q +LGH  L     Y  V  ++
Sbjct: 203 QILLGHSHLDHVAPYLEVPRRD 224


>gi|187928829|ref|YP_001899316.1| integrase family protein [Ralstonia pickettii 12J]
 gi|187725719|gb|ACD26884.1| integrase family protein [Ralstonia pickettii 12J]
          Length = 442

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 117/302 (38%), Gaps = 40/302 (13%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           IERG  LS LT +    D   +  FL   T  +  I   R  S  + R F      + + 
Sbjct: 132 IERGRALSSLTTE----DAIAYRGFLRRPTPRERWIGPPRARSAPDWRPF-----ARGLS 182

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP----RALNEKQAL---TL 137
            RS   +L+ + +  ++L +++    +    ++   ++   P    R   E + L   T+
Sbjct: 183 ARSTAYALTVLGAMFRWLIEQRYVLANPFAGIKVRGRTRVAPLDTTRGFTEGEWLLVRTI 242

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKG 194
            D +      +      R   IL   Y  GLR SE +  T  +I  D+     L + GKG
Sbjct: 243 ADGLEWSYGWDVP-AAQRLRFILDFAYATGLRASELVGATLGDIRTDERNDRWLHLVGKG 301

Query: 195 DKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            +   V L P  R A+ ++     L       + + PL   +    +      R    +R
Sbjct: 302 GRPGKVALPPLARTALDQHLVQRGLPVTPARWDPRTPLIASLEQDSVTNITGTRLWMVMR 361

Query: 252 RYLGLPLSTTA---------------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           R+ G      A               H  RH+ ATH L+ G +L +++  L H  ++TT 
Sbjct: 362 RFFGQAADIIAGDHPTLAEKLRRASPHWTRHTHATHALARGAELTTVRDNLRHASVATTS 421

Query: 297 IY 298
           IY
Sbjct: 422 IY 423


>gi|325103601|ref|YP_004273255.1| integrase family protein [Pedobacter saltans DSM 12145]
 gi|324972449|gb|ADY51433.1| integrase family protein [Pedobacter saltans DSM 12145]
          Length = 389

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 15/153 (9%)

Query: 163 LYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           L+ C  GLRIS+  +L  +NI +   T+    KG+   +V  +P      L  Y +   D
Sbjct: 247 LFSCETGLRISDNNALDYENIENKVLTINTV-KGESFGVVVTVP------LTKYAISLID 299

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
           +    + P+FR I  + +N     R ++ +     +  + T H+ R + AT+ +  GG+ 
Sbjct: 300 IKKR-RGPVFRNISDQVVN-----RNLKVIASKAEIYRNLTFHSSRDTMATNFIDAGGNA 353

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            +++ +LGH  + TT IY  ++       +M +
Sbjct: 354 ETLKELLGHSDIKTTMIYVKISEARKKKLIMNL 386


>gi|270293959|ref|ZP_06200161.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
 gi|270275426|gb|EFA21286.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
          Length = 379

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 92/207 (44%), Gaps = 21/207 (10%)

Query: 99  LKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVD-NVLLHTSHETKWIDARN 156
           L+Y   R ++ +   +N M  +K  +   R   E+  LT+ +   L+HT      +    
Sbjct: 170 LRYCLNRAVSEDYITVNPMNKIKNEDKPKRNRTERDYLTIKELTRLVHTPFYNILL---R 226

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLR----IQGKGDKIRIVPLLPSVRKAILE 212
            A L+  + CGLR  + ++L  ++I  D++       IQ K  +   +PL     K +  
Sbjct: 227 KAFLFSCF-CGLRHCDIIALRWEDIRYDENGNALLSIIQKKTKEAISLPLCSEAIKHL-- 283

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                P   N      +F G+     +  +  +++ Q     G+    T HT RH+ AT 
Sbjct: 284 -----PDRGNAPETEKVFAGLVSLGRSNVILHKWVEQA----GISKHVTFHTARHTHATM 334

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYT 299
           +L+ G DL ++  +LGH  + TTQIY 
Sbjct: 335 MLTLGVDLYTVSKLLGHTNIQTTQIYA 361


>gi|257469860|ref|ZP_05633952.1| integrase/recombinase [Fusobacterium ulcerans ATCC 49185]
 gi|317064089|ref|ZP_07928574.1| DNA integration/recombination/inversion protein [Fusobacterium
           ulcerans ATCC 49185]
 gi|313689765|gb|EFS26600.1| DNA integration/recombination/inversion protein [Fusobacterium
           ulcerans ATCC 49185]
          Length = 333

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 82/188 (43%), Gaps = 27/188 (14%)

Query: 138 VDNVLLHTSHETKWI----------DARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           +DNVL  +  + K I          D RN  ILY L+  G+R  E ++L  ++I++ +  
Sbjct: 128 IDNVLKLSFEDIKKIIGQYQINGEKDYRNVNILYTLFYTGMRSQELINLKFKHILEREGN 187

Query: 188 LRIQ------GKGDKIRIVPLLPSVRKAILEY----YDLCPFDLNLNIQLPLFRGIRGKP 237
             I+      G+     +  +L    K   EY    Y++   D+  +    +F     K 
Sbjct: 188 YYIKLEETKSGREQYKSVHDILIKKLKEYKEYLQSLYNIDDSDIEDHY---VFSSSTEK- 243

Query: 238 LNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            N  +  R +  L + +G  +    + H +RH+ AT L  NG D+  I+  LGH     T
Sbjct: 244 -NTQLSYRALYDLVQNMGKLIGKDISPHNVRHAVATELSINGADILEIRDFLGHADTRVT 302

Query: 296 QIYTNVNS 303
           ++Y N  S
Sbjct: 303 EVYINAKS 310


>gi|167766929|ref|ZP_02438982.1| hypothetical protein CLOSS21_01446 [Clostridium sp. SS2/1]
 gi|317499598|ref|ZP_07957861.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167710904|gb|EDS21483.1| hypothetical protein CLOSS21_01446 [Clostridium sp. SS2/1]
 gi|316893147|gb|EFV15366.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 363

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 63/289 (21%), Positives = 126/289 (43%), Gaps = 35/289 (12%)

Query: 38  SYECDTRQFLIFL-------------AFYTEEKITIQTIRQLSYTE-IRAFISKRRTQKI 83
           +Y  D R F  FL              F   +   I+++    Y E ++ +IS+ + + +
Sbjct: 47  AYAYDLRVFFHFLIDENPAYRNYSVLDFKVSDLDKIESVDLEEYMEYLKVYISEEQHKHM 106

Query: 84  --GDRSLKRSLSGIKSFLKYLKKRKITTESNIL--NMRNLKKSNSLPRALNEKQALTLVD 139
              ++ + R +S ++SF  Y  KR++  ++  L  +M  +++   +   L   +  +L+D
Sbjct: 107 QNTEQGVFRKMSALRSFYGYFYKRQLIEKNPTLLVDMPKIREKEII--RLEADEVASLLD 164

Query: 140 NVLLHTSHETKWIDA-------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
            V     H T    A       R+ AI+ LL G G+R+SE + L   ++    + L +  
Sbjct: 165 FVEHGGDHLTGQKRAYYEKTKERDLAIITLLLGTGIRVSELVGLNIDDVDFRNNGLHLIR 224

Query: 193 KGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           KG K   V     V  A+ +Y +     + P + + +    LF  ++ + +     Q  +
Sbjct: 225 KGRKEMTVYFGNEVADALEQYIEGSRKLIIPKEGHED---ALFYSMQRRRIGVQAVQNLV 281

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           ++  + +      T H LR ++ T L     D+  +  +LGH  ++TT+
Sbjct: 282 KKYAKEVTPLKKITPHKLRSTYGTALYQETDDIYLVAEVLGHSDVNTTR 330


>gi|45358306|ref|NP_987863.1| integrase/recombinase [Methanococcus maripaludis S2]
 gi|44921064|emb|CAF30299.1| Probable integrase/recombinase [Methanococcus maripaludis S2]
          Length = 324

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 131/302 (43%), Gaps = 18/302 (5%)

Query: 17  ERQN-WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           E QN +++  + ER    +   + + D     +FLAF  E      ++    +      +
Sbjct: 21  EEQNIYIKKFQEEREFDNIKPSTIKNDVTSLKVFLAFCEEIGKEPYSLTTHDFVIFFNML 80

Query: 76  SKRRTQKIGDRSLKRSLSGIKSF---LKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + RR   +  R+  R  + +K F   LKY+  ++   ES I   R  K        +N  
Sbjct: 81  NNRRNCTV--RTQNRYFNLLKVFYRLLKYVNFKEFERES-IERKRFSKFEKKHYDTINFD 137

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               ++  ++L  S        R++ I+ +L+  G R SEALS+  ++   ++   RI+ 
Sbjct: 138 TYNRIIKEIILSNSR----TRLRDALIVRVLWETGCRRSEALSIRYKDCDFEKGRFRIRD 193

Query: 193 -KGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNI-QLPLFRGIRGKPLN--PGVFQRYI 247
            K  + R V +     + + +Y  +    D N  I Q  + +  +   L+    VF++ +
Sbjct: 194 TKTYEERTVVIAEETVEIVRDYIKENIKRDSNDYIFQNEMIQNGKRVKLDWITNVFKKAV 253

Query: 248 RQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           R+L+    +P       H+LRH  AT LL  G  +  ++ ILGH  L TT  Y++   + 
Sbjct: 254 RKLKEEGVIPEGKRIVIHSLRHGRATDLLDKGVPIDVVKEILGHRSLETTLYYSHSKERK 313

Query: 306 GG 307
            G
Sbjct: 314 NG 315


>gi|320012999|gb|ADW07848.1| integrase family protein [Streptomyces flavogriseus ATCC 33331]
 gi|320013124|gb|ADW07972.1| integrase family protein [Streptomyces flavogriseus ATCC 33331]
          Length = 357

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 15/185 (8%)

Query: 148 ETKWID---------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           E +W+D          RN  +L L Y   LR  E  SL   ++     TLR++ +  K R
Sbjct: 154 EQQWLDILAVAAAEPVRNRVMLALAYDAALRREELCSLRTDDLDPAHRTLRVRAETTKNR 213

Query: 199 IVPLLP-SVRKAILEYYDLCPFDLNLNIQLPLF----RGIRGKPLNPGVFQRYIRQLRRY 253
           +  ++P S    +L    L         + PLF    R    +PL+   + + +R++   
Sbjct: 214 LERVVPYSAPTGVLLSGYLAHRATVSRARGPLFLSESRRNHAQPLSLWTWSKVVRRIALA 273

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +P  +T HT RH   T L   G +L +I +  GH    +T  Y +++ ++  D +   
Sbjct: 274 ADVPRFST-HTTRHLCLTDLARMGWELHAIATFAGHRHTDSTLTYIHLSGRDLADKLSRG 332

Query: 314 YDQTH 318
            +Q H
Sbjct: 333 MEQIH 337


>gi|301048720|ref|ZP_07195729.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 185-1]
 gi|300299466|gb|EFJ55851.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 185-1]
          Length = 336

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 128/309 (41%), Gaps = 51/309 (16%)

Query: 8   EIVSFE----LLKERQNWLQNLEIERGLSKL-------TLQSYECDTRQFLIFLAFYTEE 56
           E V+FE        ++ W       R LS+L         Q++E  T++F   L   T  
Sbjct: 44  EAVAFERYTIAYASQKEWAGQRADRRTLSELLDIWWKYHGQNHEHGTKEFNHLLK--TIS 101

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS---LSGIKSFLKYLKKRKITTESNI 113
            I    + ++S   +  + S R    I   ++ R    LSG+  F K ++  + + +  I
Sbjct: 102 GIGDIPVSRMSKRALMDYRSMRLRDGISAATINRDMYRLSGM--FTKLIQLDEFSGQHPI 159

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
             +  L ++N     L EK  +  + NVL          D  +  +  L    G R +E 
Sbjct: 160 HGLPPLAEANPEMTFL-EKAEIEKLLNVL----------DGDDLLVALLCLSTGGRWTEV 208

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
            +L P  I + + T  ++ K  K R VP+   + K + E      F ++           
Sbjct: 209 ATLKPAQITNCRVTF-LKTKNGKKRTVPISEELEKKVKEEASAKLFKVD----------- 256

Query: 234 RGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                    ++++   LRR    +P +   H LRH+FA+H + NGG++ ++Q ILGH  +
Sbjct: 257 ---------YEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASI 307

Query: 293 STTQIYTNV 301
             T  Y ++
Sbjct: 308 QQTMAYAHL 316


>gi|298383457|ref|ZP_06993018.1| integrase [Bacteroides sp. 1_1_14]
 gi|298263061|gb|EFI05924.1| integrase [Bacteroides sp. 1_1_14]
          Length = 396

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 70/164 (42%), Gaps = 48/164 (29%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           A L+  Y  GLR S+ ++LT  NI++  Q T  I              SV+  I      
Sbjct: 238 AFLFCCYA-GLRYSDFINLTAANIVELHQETWLI------------YKSVKTGI------ 278

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-------------- 262
                  +++LPL+    GK L   V + Y   L  +  L  ++                
Sbjct: 279 -------DVRLPLYLLFEGKGLR--VLENYKDDLNGFFKLKDNSNVNKDLNALAKLAEID 329

Query: 263 -----HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                HT RH+ AT L+ +G ++ ++Q +LGH  + TTQ+Y N+
Sbjct: 330 KRISFHTARHTNATLLIYSGANITTVQKLLGHKSVKTTQVYANI 373


>gi|83589229|ref|YP_429238.1| Phage integrase [Moorella thermoacetica ATCC 39073]
 gi|83572143|gb|ABC18695.1| Phage integrase [Moorella thermoacetica ATCC 39073]
          Length = 318

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 117/285 (41%), Gaps = 36/285 (12%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSF 98
           Y    ++FL F A     +  +Q +R +S   + A+I  RR  +  ++++K  L+ ++ F
Sbjct: 54  YRDSMKKFLSFCA----TRFRLQNLRNISDKHLEAYIDYRRGNETSEKTIKGDLAAVRFF 109

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
            +Y++  +     N        +   L    + +      D          + +D    A
Sbjct: 110 HRYIENARFQLSGN--------EKFGLASTPDGRADRAWSDGEYERMIALAERLDRPEVA 161

Query: 159 I-LYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAILEYYD 215
           + + L    GLR+ E   L+ ++     +   L ++GKG K R +PL      A+ E   
Sbjct: 162 LAMRLARYAGLRVHEITRLSRKDAEQALAAGMLHVKGKGGKERDIPLATEAAVALKE--- 218

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR---YLGLPLSTTAHTLRHSFA-T 271
            C    + N +L +  G +   L     Q +IR+ R     LG  ++ T H LRH++A  
Sbjct: 219 ACEMAASENDKLLVPPGEK-THLVIKRIQNFIRRHRDKVMELGKEVNITFHGLRHAYARE 277

Query: 272 HLLSNGGDLRSIQSI-------LGHFRLSTTQIYTNVNSKNGGDW 309
                 G+L+ I+         LGH R   T+IY       G +W
Sbjct: 278 QFRVKVGELKKIRRALAEVSEKLGHNRPEVTKIYL------GSEW 316


>gi|312875712|ref|ZP_07735708.1| site-specific tyrosine recombinase XerS [Lactobacillus iners LEAF
           2053A-b]
 gi|311088763|gb|EFQ47211.1| site-specific tyrosine recombinase XerS [Lactobacillus iners LEAF
           2053A-b]
          Length = 363

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 73/166 (43%), Gaps = 18/166 (10%)

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----DQSTLRIQ--GKGDKI 197
           H     K+   R+ AI+ LL   GLRISE ++L   NI D    D+S L I+  GK D  
Sbjct: 189 HAIRYFKFNKERDIAIIALLLASGLRISELVNL---NIHDLNIIDRSVLVIRKGGKKDAA 245

Query: 198 RIVP-LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR----GKPLNPGVFQRYIRQLRR 252
            I    +P ++K    Y  +       N QL      R     K ++    QR++ +   
Sbjct: 246 LIADWAIPYLKK----YLHVRNTRYQPNKQLKAIFITRYRETAKRIDTSTIQRFVEKYSV 301

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                  TT H LRHS  T + +   D+ ++ + LGH  LS T  Y
Sbjct: 302 AFPDGSRTTPHKLRHSLGTEIYNKSMDVVAVATQLGHTGLSATDQY 347


>gi|298373373|ref|ZP_06983362.1| integrase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274425|gb|EFI15977.1| integrase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 431

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 27/161 (16%)

Query: 158 AILYLLYGC--GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVRKAIL 211
           A L  ++ C  G+ I++  +L  ++I    D Q  +R + +  K+  +VPL P + +AI+
Sbjct: 238 ARLMFVFSCFTGMAIADMENLEYRHIQTAADGQRYIRKERQKTKVEFVVPLHP-IAEAII 296

Query: 212 EYY--DLCPFDL---------NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
            YY  +L   +          +L  Q    R + GK L+       IRQ   Y       
Sbjct: 297 NYYRKELAGNEEQQAVKEKGDSLVFQPHCSRSVMGKNLSIVGKACGIRQRLSY------- 349

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             H  RH+F T  LS G  + SI  ++GH  +S+TQIY  V
Sbjct: 350 --HVARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQV 388


>gi|256840356|ref|ZP_05545864.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737628|gb|EEU50954.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 386

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 36/57 (63%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +Y+R+L+   G+    T H  RH+ A+  +S G D+ +++ +LGH  +++T++Y  V
Sbjct: 313 KYVRRLKEKAGIEKDLTYHCSRHTTASLAISAGADISAVKDVLGHGSITSTEVYAKV 369


>gi|197363656|ref|YP_002143293.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197095133|emb|CAR60680.1| probable bacteriophage integrase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 337

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 23/143 (16%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQST-LRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           I  +    G R SEA     +N+   Q T  RI  K  K R V  +P  +    E Y+  
Sbjct: 198 IAKICLATGARWSEA-----ENLEGSQVTPYRITYKNTKSRKVRSIPISK----ELYN-- 246

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
                   ++P  RG    P     F+R +   +  + LP     H LRH+FA+H + NG
Sbjct: 247 --------EMPKKRGQLFTPCRK-TFERTV--AKAGIELPEGQCTHVLRHTFASHFMMNG 295

Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300
           G++  ++ ILGH  +  T IY +
Sbjct: 296 GNILVLKEILGHSDIKMTMIYAH 318


>gi|90962164|ref|YP_536080.1| Phage integrase [Lactobacillus salivarius UCC118]
 gi|90821358|gb|ABD99997.1| Phage integrase [Lactobacillus salivarius UCC118]
          Length = 381

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 25/172 (14%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------GKGDKIRIVPLLPSV 206
           D +   +  LL   GLR+ E L+LT  ++    +T+ I         G KI+      S+
Sbjct: 194 DLKKYTLFRLLAYSGLRVGECLALTWHDLDYKNNTIAINKTYAKTNNGIKIQTPKTKASI 253

Query: 207 RKAILEYYD---LCPFDLN------------LNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           RK  L+      L  + LN            +N Q  +F   +   +     +  I Q+ 
Sbjct: 254 RKVSLDVETIQVLKEWQLNQRKQLLKVGINAMNKQQLIFSNNKNSFIANETVRLAIHQIA 313

Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           +  G+ P++T  H  RH+ AT L ++G D++ +Q+ LGH  + TT  IYT+ 
Sbjct: 314 KKTGIHPITT--HGFRHTHATLLFASGMDIKQVQARLGHSNVQTTLNIYTHA 363


>gi|15921682|ref|NP_377351.1| integrase/recombinase [Sulfolobus tokodaii str. 7]
 gi|15622469|dbj|BAB66460.1| 284aa long hypothetical integrase/recombinase [Sulfolobus tokodaii
           str. 7]
          Length = 284

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 109/243 (44%), Gaps = 40/243 (16%)

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I KRR + +  R        I + L++LK   +  +  I  +R  +      RAL+E++ 
Sbjct: 78  IEKRRKKSVTARHY------IIAVLRFLKWLGVDVKPTIPRIRRKE-----IRALSEEEI 126

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-K 193
           + + +NV             ++  ++ LL   GLR  E LS+   +I  ++  + ++  K
Sbjct: 127 VKIKENVK----------KLKDRLLIQLLLDTGLRSKELLSIKKSDINIERRYIIVRNTK 176

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
             + RIV       + +  Y        N+     LF       +      R +++L + 
Sbjct: 177 NGEERIVFFTEETARLLKSYLR------NIEDNGILFN------MTYHALYRKLKRLGKK 224

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           LG+ L    H LRH+FAT  +  G  L  +Q +LGH  + TTQIYT++ +++    + EI
Sbjct: 225 LGIDLR--PHILRHTFATQAIRKGMPLPVVQKLLGHKDIRTTQIYTHLVTED----LQEI 278

Query: 314 YDQ 316
           Y +
Sbjct: 279 YKK 281


>gi|313634565|gb|EFS01051.1| toxin-antitoxin system, toxin component, PIN family [Listeria
           seeligeri FSL N1-067]
          Length = 381

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 81/190 (42%), Gaps = 19/190 (10%)

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           E++ +T  D   L +  +T   D       YLL   GLR SEAL+LT Q++  +   L I
Sbjct: 174 EEKDITFYDKYELRSFLDTVKDDTFKYTFFYLLAFTGLRKSEALALTWQDVDLNNKRLYI 233

Query: 191 Q---GKGDKIRIVPLLPSVRKAILEY-YDLCPFDL----------NLNI----QLPLFRG 232
                +G+  RI+      +    +   D    D+          N +I    ++ +   
Sbjct: 234 NKTLSRGEHARILVNTTKTKAGKRDISIDASTVDVLKKWKSYQRGNHHILRLDKVQIIFD 293

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
            +G   NP     ++  + ++       T+H  RH+ A+ L   G  L+ +Q  LGH  +
Sbjct: 294 NKGNYYNPSSTYSWLDNIFKHHTELKKITSHGFRHTHASLLFEAGASLKDVQERLGHADI 353

Query: 293 STTQ-IYTNV 301
            TT  IYT+V
Sbjct: 354 QTTSNIYTHV 363


>gi|307710443|ref|ZP_07646881.1| integrase [Streptococcus mitis SK564]
 gi|307618796|gb|EFN97934.1| integrase [Streptococcus mitis SK564]
          Length = 405

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 21/177 (11%)

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
           E + I  ++  + YL +  G R SE+ +L  ++I  D+S +++    D+   V    S +
Sbjct: 213 EDEKISLKDYVLFYLTFFLGDRKSESYALQWKHIDFDKSQIQLLQALDRYGEVKSTKSNK 272

Query: 208 KAIL----------------EYYDLCPFDLNLNIQLPLF-----RGIRGKPLNPGVFQRY 246
           K +                 + Y+L  F +  N +  +F     +G   KPL+       
Sbjct: 273 KTVFSVSGDLLQLLKNWKEQQRYELAKFGIISNPEQFVFTYIDTKGNINKPLHADYLNNK 332

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           ++ +R+        T H LRH+ AT     G  L +I   L H    TTQIY N ++
Sbjct: 333 MKSIRKRHKELAHATPHKLRHTGATLAKQAGMSLEAISEALTHSDTGTTQIYVNTSN 389


>gi|317052809|ref|YP_004119575.1| integrase family protein [Pantoea sp. At-9b]
 gi|316953549|gb|ADU73019.1| integrase family protein [Pantoea sp. At-9b]
          Length = 288

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 30/44 (68%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T HT RHS+A H+L  G  L+++QS+LGH    +T++YT V
Sbjct: 216 VPVTLHTFRHSYAMHMLYAGTPLKALQSLLGHKSAKSTEVYTRV 259


>gi|218263889|ref|ZP_03477845.1| hypothetical protein PRABACTJOHN_03535 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222439|gb|EEC95089.1| hypothetical protein PRABACTJOHN_03535 [Parabacteroides johnsonii
           DSM 18315]
          Length = 327

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 107/253 (42%), Gaps = 29/253 (11%)

Query: 61  QTIRQLSYTEIRAFISKRR----TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           + IR ++  ++R +++  +      K+   +++R LS   SF  +L+      +S +  +
Sbjct: 86  KNIRHITTDDLRNYLNDYQQTSGATKVTVDNIRRILS---SFFSWLEDEDYIVKSPVRRI 142

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             +K   ++          T  D  L       + I  R+ A++ LL   G+R+ E + L
Sbjct: 143 HKVKVGKTVKE--------TYSDEALEQMRDHCEGI--RDLALIDLLASTGMRVGELVKL 192

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
              +I  +     + GKGDK R V    +  K  L+ Y     D N  + + L       
Sbjct: 193 NRNDIDFENRECIVTGKGDKQRRV-YFDARAKIHLQRYLAERIDDNPALFVSLL-----A 246

Query: 237 PLN----PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           P +     GV  R +R+L R L +P     H  R + AT  +  G  +  +Q +LGH  L
Sbjct: 247 PYDRLQISGVEIR-LRRLGRELNIP-KVHPHKFRRTLATMAIDKGMPIEQVQHLLGHQSL 304

Query: 293 STTQIYTNVNSKN 305
            TT  Y  VN  N
Sbjct: 305 DTTLQYAMVNQTN 317


>gi|218128957|ref|ZP_03457761.1| hypothetical protein BACEGG_00530 [Bacteroides eggerthii DSM 20697]
 gi|317477483|ref|ZP_07936709.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|217988920|gb|EEC55237.1| hypothetical protein BACEGG_00530 [Bacteroides eggerthii DSM 20697]
 gi|316906347|gb|EFV28075.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 424

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 113/254 (44%), Gaps = 15/254 (5%)

Query: 49  FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT 108
            L F +  KI  + +    Y  I  ++   R + + + ++   LS  ++     +K+ + 
Sbjct: 149 LLRFCSPRKIKFKDV---DYVFITDYMHYLRARGVAENTVHMYLSNFRAICNKARKQGVK 205

Query: 109 T-ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
             + N     ++++  ++ RAL+ K+ + L+ +V L      +   AR+   ++  Y  G
Sbjct: 206 VGKDNPFADLDIRRRETVKRALS-KEEIALIASVNLR--RHPRLEQARD-LFMFSFYCRG 261

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF---DLNLN 224
           +   + + L    ++ D         G +++ V LLP ++K I +Y    P+    ++  
Sbjct: 262 MSFVDVIHLRNDWVVKDTIFYARSKTGQRLQ-VGLLPDLQKIIEKYRTDSPYIFPYIDSG 320

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
               ++   R      G+  RY++QL R L + L  T +  RHS+AT   + G  +  I 
Sbjct: 321 SSRSVYTQYR---YALGMINRYLKQLGRLLHIDLPLTTYVARHSWATIAKNEGIPISLIS 377

Query: 285 SILGHFRLSTTQIY 298
             LGH    TTQIY
Sbjct: 378 EGLGHTSEKTTQIY 391


>gi|209901196|ref|YP_002286977.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae]
 gi|209574147|gb|ACI63035.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae]
          Length = 547

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 131/324 (40%), Gaps = 44/324 (13%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +ERG  LS LT      D   +  F+   T  +  +   R     E R F     +  + 
Sbjct: 230 VERGRALSSLTTD----DAIAYRAFVRHPTPRERWVGPPRPRDSVEWRPF-----SGGLS 280

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            RS   +L+ + +  ++L +++    +    ++   + ++L  AL+  +  T  + +LL 
Sbjct: 281 ARSAAYALTVLSALFRWLIEQRYVLANPFAGVK--VRGHALRPALDTARGFTEGEWLLLR 338

Query: 145 TSHET-----KWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDDQST---LRIQGK 193
              +       W +     + ++L   Y  GLR SE +     N+  D+     L + GK
Sbjct: 339 AIADGLEWSYGWSEPAAQRLRFMLDFGYATGLRASELVGAVLGNVRLDEHGDHWLHLVGK 398

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLN---LNIQLPLFRGIRGKPLNPG--------V 242
           G K   V L P    A+ +Y       ++    N + PL  G  G+  N G        V
Sbjct: 399 GGKPGKVALPPLAYTALDQYLAQRQLPVSRERWNPKTPLV-GSLGEDGNAGITGPHLWCV 457

Query: 243 FQRYIRQLRRYLGL--PLST------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            +R+  Q    +    P++       T H +RHS A+H L+ G  L +++  L H  ++T
Sbjct: 458 LRRFFTQAAEAIEADHPVAAEKLRRATPHWMRHSHASHALARGAQLTAVRDNLRHASIAT 517

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTH 318
           T +Y + +       M + +   H
Sbjct: 518 TSMYLHGDELERARQMRQAFGARH 541


>gi|187940078|gb|ACD39211.1| phage integrase [Pseudomonas aeruginosa]
          Length = 379

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 37/175 (21%)

Query: 167 GLRISEALSLT------PQNIMDDQSTLRI-------QGKGDKIRIVPLLPSVRKAILEY 213
           GLR  E L+        P  I    S  R+       + KG+K R + +  S+  A+ +Y
Sbjct: 200 GLRKEELLTFPSSYIFDPAQISKGSSHFRVFCSPKDMELKGNKAREIDIPRSLMAALWQY 259

Query: 214 YDLCPFDLNLNIQ------LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                 + N ++Q      +PLF    G P +P    + +  + + LGLP + T H LRH
Sbjct: 260 KI---HERNRSMQTSCVESIPLFLSRYGVPYSPK--GQSLNHMWKDLGLPFTVTPHMLRH 314

Query: 268 SFATHLLSNGGDLRSIQSI----------LGHFRLSTTQIYTNVNSKNGGDWMME 312
           ++ATH L    D+R  +S+          LGH  ++TTQ Y ++ S    D M E
Sbjct: 315 TYATHTLH---DMRRRKSVIDPLLYVRDRLGHSSVATTQRYLHLISMIEDDVMGE 366


>gi|219848551|ref|YP_002462984.1| integrase domain-containing protein SAM domain-containing protein
           [Chloroflexus aggregans DSM 9485]
 gi|219542810|gb|ACL24548.1| integrase domain protein SAM domain protein [Chloroflexus aggregans
           DSM 9485]
          Length = 317

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 133/327 (40%), Gaps = 62/327 (18%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           + N   +  +  +L E +N+L  L  E  LS+ T+ SY CD R   + L          Q
Sbjct: 3   DANGFGQQPARTILGELENFLAELRQEDRLSENTITSYRCDLRTAGLALC---------Q 53

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            +  ++  +I+ F++ R+ Q     +  R ++ +  F ++ K+R   T + +  +     
Sbjct: 54  ELSTITAHDIQQFLAGRKEQPG---TTNRRIASLNRFFRWAKERGYVTHNPVEQIGGRLP 110

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           +   P+ +  +  L  +D  +       +        I  LL   G+R  E L+L   ++
Sbjct: 111 TEHRPQPIANEHELRALDQAIAAAPQPYRL-------IFTLLREIGIRTDEVLNLNLGDV 163

Query: 182 MDDQST----LRIQGKGDKIRIVPLLP--------SVRKAILEYYDLCPFDLNLNIQLPL 229
           + +       +R    G K R++ L P         +R  + E   L P         PL
Sbjct: 164 ILEPGREMLLVRDSKSGSK-RMIALTPDAMPRSLRGLRHWVREMDHLPP-------DTPL 215

Query: 230 FRGIRG-KPLNPGVFQRYI--------------RQLRRYLGLPLSTTAHTLRHSFATHLL 274
           FR  RG +     + +R++              R+  RY       T H LRH+ AT L+
Sbjct: 216 FRSSRGTRASYDTLHRRWVAVCRAARLIDVVDGREQPRY-------TLHHLRHTAATKLV 268

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +   + + ++ ILGH    +T+ YT +
Sbjct: 269 AFYPE-QVVRRILGHRDPRSTRRYTEL 294


>gi|27383304|ref|NP_774833.1| site-specific integrase/recombinase [Bradyrhizobium japonicum USDA
           110]
 gi|27356478|dbj|BAC53458.1| blr8193 [Bradyrhizobium japonicum USDA 110]
          Length = 366

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 14/158 (8%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--QGKGDKIRIVPLLPSVRKAILE 212
           R+ A L  L   G R+SEA  +   ++  ++   ++   GKG + R+VP+   + +++  
Sbjct: 104 RDRAFLLFLARTGARVSEATGVNANDLQLERGRPQVLLHGKGRRDRVVPIPQDLVRSLTN 163

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLN----PGVFQRYIRQL---RRYL-GLPLSTTAHT 264
              L    L  +   P+F G+  + L       + +R   Q    R  L G P+S   H 
Sbjct: 164 L--LSERGLAHHEPRPIFVGVHNERLTRFGATHIVRRAASQAGSTRPSLEGKPISP--HI 219

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            RHS A  LL +G DL +IQ+ LGH +++TT  Y   +
Sbjct: 220 FRHSLAMKLLRSGVDLLTIQAWLGHAQVATTHRYAAAD 257


>gi|54027743|ref|YP_121984.1| putative recombinase [Nocardia farcinica IFM 10152]
 gi|54019251|dbj|BAD60620.1| putative recombinase [Nocardia farcinica IFM 10152]
          Length = 353

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 79/169 (46%), Gaps = 24/169 (14%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQ-GKG-----DKIRIVPLLP 204
           ARN  +  L    GLR++EA  L   +I   +     L ++ GKG      + R+VPL+ 
Sbjct: 161 ARNYMVARLAADVGLRVNEACMLDLDDIRWELGRFGKLNVRHGKGAFRSGPRQRLVPLIN 220

Query: 205 SVRKAILEYYD--LCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQ-LRRYLG----- 255
               A+  + +     FD +  + + PLF   R +  + G   R  R  +RR LG     
Sbjct: 221 GADTALTWFVEDVWAQFDADETLPRAPLFPSERRRAGSSGT--RVTRDVIRRALGGAVDR 278

Query: 256 -LPLST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            LP  +   T H LRH  A+ L   G D+ +IQ +LGH  ++TT  Y +
Sbjct: 279 HLPTWSGRLTPHVLRHYCASQLYRTGVDILAIQELLGHSWITTTMRYVH 327


>gi|227904064|ref|ZP_04021869.1| site-specific tyrosine recombinase XerS [Lactobacillus acidophilus
           ATCC 4796]
 gi|227868083|gb|EEJ75504.1| site-specific tyrosine recombinase XerS [Lactobacillus acidophilus
           ATCC 4796]
          Length = 358

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 6/163 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI+ L+ G G+R+SE   +  Q++   ++ L +  KG +   VP+       I +Y 
Sbjct: 189 RDMAIIALILGTGIRVSECAGVDLQDLNLKEAVLDVTRKGGQKDSVPIAEWTLSYIKQYK 248

Query: 215 DLCPFDLNLNIQLPLFRGIR----GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           D+       + +   F   R     + +     ++ + +     G PL  T H LRH+ A
Sbjct: 249 DIRTDRYMADQKQTAFFLTRWHNQTRRITANAIEKMVNKYSASFGHPL--TPHKLRHTLA 306

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           + L     D   +   LG    + T +YT+V+ +   D + +I
Sbjct: 307 SELYEVTKDQVLVAQQLGQKGTTATDLYTHVDQRKQRDALNQI 349


>gi|255693813|ref|ZP_05417488.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|260620383|gb|EEX43254.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 406

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 19/148 (12%)

Query: 167 GLRISEALSLTPQNI---MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           GL  ++  +L P++I    + +  +R+ + K D    +PL P + + ILE Y+    D  
Sbjct: 251 GLAYADTRALHPRHIGKTSEGRKYIRVCRAKTDVEAFIPLHP-IAEQILELYNTTDDDR- 308

Query: 223 LNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
                P+F      PL    V    +  +   LG+  + + H  RHSF T +LS+G  + 
Sbjct: 309 -----PVF------PLPVRDVLWYEVHGMGVALGMKENLSYHMARHSFGTLMLSSGIPIE 357

Query: 282 SIQSILGHFRLSTTQIYTNV-NSKNGGD 308
           SI  ++GH  +++TQ+Y  V + K  GD
Sbjct: 358 SIAKMMGHTNINSTQVYAQVTDRKISGD 385


>gi|319654996|ref|ZP_08009068.1| hypothetical protein HMPREF1013_05690 [Bacillus sp. 2_A_57_CT2]
 gi|317393313|gb|EFV74079.1| hypothetical protein HMPREF1013_05690 [Bacillus sp. 2_A_57_CT2]
          Length = 370

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 136/324 (41%), Gaps = 65/324 (20%)

Query: 32  SKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIR---AFISKRR--- 79
           S LTL +Y  D ++F  +L         + + I++ T+  LS  +      FIS+++   
Sbjct: 37  SPLTLFNYVRDFKEFFGWLIAEGIDTCDSIKDISVGTLEFLSLDDANNYFKFISRKKYKV 96

Query: 80  ------TQKIGDRSLKRSLSGIKSFLKYL------KKRKITTESNILNMRNLKKSNSLPR 127
                 T+KI  +++ R  S ++S  KYL         K   E N++    +KK   +  
Sbjct: 97  SKKDNETKKIDTKTVNRHKSSLRSLFKYLTVEAEVSAGKPYFERNVMEKIPIKK---VSE 153

Query: 128 ALNEKQALTLVDNVLLHTSHETKWID-------------------------ARNSAILYL 162
            LNE+ A  + D + +    E K +D                          R+ AIL L
Sbjct: 154 TLNER-AKKITDKIFI----EDKDVDFLEYVQNEYAASLSPAQMRYFKRDKERDFAILSL 208

Query: 163 LYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
             G G+R++E  +L  ++I     + S +R  GK D + I P      +A LE       
Sbjct: 209 FLGSGIRVNELTNLRIKDIDFSAKEISVIRKGGKKDTVSITPSSLEDVEAYLEVRKEKYK 268

Query: 220 DLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS-N 276
             +   +    + ++G  +PL     +  + +  +     +S   H LRH++AT+L    
Sbjct: 269 AGDGENEYIFVKNLKGTPQPLTNRAVEDIVYKYTKSFDKRMS--PHKLRHTYATNLAEQT 326

Query: 277 GGDLRSIQSILGHFRLSTTQIYTN 300
           GGD+  I + LGH +   + +Y N
Sbjct: 327 GGDIPLIMNQLGHTQSDISLLYIN 350


>gi|288799833|ref|ZP_06405292.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon
           299 str. F0039]
 gi|288333081|gb|EFC71560.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon
           299 str. F0039]
          Length = 362

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 21/158 (13%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSVRKAILEYYD--- 215
            L+ C  GLR S+   L    + +D   +  +Q K   +  + L     K + E  +   
Sbjct: 216 FLFSCLTGLRFSDVSKLRWAEVSEDFKRITFVQKKTSGLEYLDLSEGATKILKERKNNGG 275

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
           L  +DL      P   G  GK LN           R   G+    + HT RH+FAT LL+
Sbjct: 276 LVFYDL------PRESGNAGKLLNS---------WRVRAGINKKISFHTARHTFATMLLT 320

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              DL ++  +LGH  + TTQIY  +  K   D + +I
Sbjct: 321 LDVDLYTVSKLLGHKDIKTTQIYAKIIDKKKQDAVNKI 358


>gi|29347986|ref|NP_811489.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29339888|gb|AAO77683.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 411

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 22/153 (14%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQS----------TLRIQGKGDKIRIVPLLPSVRKA 209
            ++ C  GL  ++  +L  ++++ D +           L  + K   I  +PLLP V  A
Sbjct: 250 FIFACFTGLAFADVSTLKKEDLVQDNNGDWWIRKGRIKLMHRHKASSICNIPLLP-VPLA 308

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           IL+ Y+  P  +     LP+       P N  +   Y++++  + G+  + T H  RH+F
Sbjct: 309 ILKKYENNPVCIKKGCCLPV-------PCNQKM-NSYLKEIADFCGIKKNITTHAGRHTF 360

Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T + L+N   L+ +  +LGH     TQ Y  V
Sbjct: 361 GTTITLANNVPLQDVSVMLGHASTRMTQHYARV 393


>gi|323943751|gb|EGB39849.1| phage integrase site-specific recombinase [Escherichia coli H120]
          Length = 103

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 243 FQRYIRQLRRYL-GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           ++++   LRR    +P +   H LRH+FA+H + NGG++ ++Q ILGH  +  T  Y ++
Sbjct: 24  YEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 83


>gi|292659084|gb|ADE34467.1| RedF [Cloning vector pTARa]
          Length = 170

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 99  VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 142


>gi|298482697|ref|ZP_07000881.1| tyrosine type site-specific recombinase [Bacteroides sp. D22]
 gi|298271160|gb|EFI12737.1| tyrosine type site-specific recombinase [Bacteroides sp. D22]
          Length = 416

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 10/106 (9%)

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K + V  +P   +A    Y LC        +L +F G+   P +P    R +++     G
Sbjct: 303 KTKGVEYMPISEQA----YSLC--GEQQEGELLVFAGL---P-DPSWINRPVKRWVEAAG 352

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +    T H  RHS+AT  L+ G D+ ++  +LGH  + TTQ+Y  V
Sbjct: 353 ISKHITFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVKTTQVYAKV 398


>gi|189462248|ref|ZP_03011033.1| hypothetical protein BACCOP_02934 [Bacteroides coprocola DSM 17136]
 gi|189431050|gb|EDV00035.1| hypothetical protein BACCOP_02934 [Bacteroides coprocola DSM 17136]
          Length = 406

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 19/148 (12%)

Query: 167 GLRISEALSLTPQNI---MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           GL  ++  +L P++I    + +  +R+ + K D    +PL P + + ILE Y+    D  
Sbjct: 251 GLAYADTRALHPRHIGKTSEGRKYIRVCRAKTDVEAFIPLHP-IAEQILELYNTTDDDR- 308

Query: 223 LNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
                P+F      PL    V    +  +   LG+  + + H  RHSF T +LS+G  + 
Sbjct: 309 -----PVF------PLPVRDVLWYEVHGMGVALGMKENLSYHMARHSFGTLMLSSGIPIE 357

Query: 282 SIQSILGHFRLSTTQIYTNV-NSKNGGD 308
           SI  ++GH  +++TQ+Y  V + K  GD
Sbjct: 358 SIAKMMGHTNINSTQVYAQVTDRKISGD 385


>gi|209901048|ref|YP_002286830.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae]
 gi|209901058|ref|YP_002286840.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae]
 gi|209901077|ref|YP_002286859.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae]
 gi|294496696|ref|YP_003560389.1| resolvase [Klebsiella pneumoniae]
 gi|167077384|gb|ABZ10915.1| resolvase [Klebsiella pneumoniae]
 gi|167077391|gb|ABZ10921.1| resolvase [Klebsiella pneumoniae]
 gi|167077398|gb|ABZ10927.1| resolvase [Pseudomonas aeruginosa]
 gi|167077405|gb|ABZ10933.1| resolvase [Klebsiella pneumoniae]
 gi|209574205|gb|ACI63092.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae]
 gi|209574215|gb|ACI63101.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae]
 gi|209574234|gb|ACI63120.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae]
 gi|289065758|gb|ADC80914.1| TnpR [Klebsiella pneumoniae]
 gi|293339405|gb|ADE43959.1| resolvase [Klebsiella pneumoniae]
          Length = 571

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 131/324 (40%), Gaps = 44/324 (13%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +ERG  LS LT      D   +  F+   T  +  +   R     E R F     +  + 
Sbjct: 254 VERGRALSSLTTD----DAIAYRAFVRHPTPRERWVGPPRPRDSVEWRPF-----SGGLS 304

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            RS   +L+ + +  ++L +++    +    ++   + ++L  AL+  +  T  + +LL 
Sbjct: 305 ARSAAYALTVLSALFRWLIEQRYVLANPFAGVK--VRGHALRPALDTARGFTEGEWLLLR 362

Query: 145 TSHET-----KWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDDQST---LRIQGK 193
              +       W +     + ++L   Y  GLR SE +     N+  D+     L + GK
Sbjct: 363 AIADGLEWSYGWSEPAAQRLRFMLDFGYATGLRASELVGAVLGNVRLDEHGDHWLHLVGK 422

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLN---LNIQLPLFRGIRGKPLNPG--------V 242
           G K   V L P    A+ +Y       ++    N + PL  G  G+  N G        V
Sbjct: 423 GGKPGKVALPPLAYTALDQYLAQRQLPVSRERWNPKTPLV-GSLGEDGNAGITGPHLWCV 481

Query: 243 FQRYIRQLRRYLGL--PLST------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            +R+  Q    +    P++       T H +RHS A+H L+ G  L +++  L H  ++T
Sbjct: 482 LRRFFTQAAEAIEADHPVAAEKLRRATPHWMRHSHASHALARGAQLTAVRDNLRHASIAT 541

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTH 318
           T +Y + +       M + +   H
Sbjct: 542 TSMYLHGDELERARQMRQAFGARH 565


>gi|27367129|ref|NP_762656.1| integrase [Vibrio vulnificus CMCP6]
 gi|27358697|gb|AAO07646.1|AE016810_149 Integrase [Vibrio vulnificus CMCP6]
          Length = 343

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%)

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           YI + +  + LP    +H LRHSFA+H + NGG++  ++ ILGH  +S T  Y +
Sbjct: 271 YILKNKLGITLPSGQASHVLRHSFASHFMMNGGNILVLRDILGHADISMTMRYAH 325


>gi|37525910|ref|NP_929254.1| hypothetical protein plu1991 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36785339|emb|CAE14284.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 206

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 2/151 (1%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEY 213
           R+  ++Y+ +  GLR+SEA  L   ++  +  +L I+  KG    I PLL    +AI E+
Sbjct: 27  RDYCLVYMSFVHGLRVSEARYLRISDLDLEDGSLYIRRLKGGFSTIHPLLGYEIQAIREW 86

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
             +            LF    G PL      + I QL R   + + +  H LRH+    L
Sbjct: 87  LKVRKTFRGAESDW-LFLSRSGNPLTRQRIYQLISQLGRLANISVGSHPHMLRHACGFAL 145

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              G D R IQ  LGH  +  T  YT  N++
Sbjct: 146 ADRGIDTRLIQDYLGHSNIRHTVRYTASNAE 176


>gi|153956217|ref|YP_001396982.1| hypothetical protein CKL_3621 [Clostridium kluyveri DSM 555]
 gi|146349075|gb|EDK35611.1| Conserved protein [Clostridium kluyveri DSM 555]
          Length = 199

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 16/184 (8%)

Query: 127 RALNEKQALTLVDNVL-LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           + L +++A +L   +   +TSH       R+  I  + Y CGLR+SE   L  Q+    +
Sbjct: 10  KYLTQQEAYSLFKTIENTYTSHS-----LRDLVIFRIAYRCGLRVSEIALLKMQDYNASK 64

Query: 186 STL---RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
             L   R++G  +       L S  K IL+ Y +   ++    Q+ LF   +  P++   
Sbjct: 65  GELYCRRLKGSNNN---TLRLDSKTKYILDKY-IVENNITSTSQV-LFSSQKNNPISRQT 119

Query: 243 FQRYIRQLRRYLGLPLSTTAH--TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               +++     G+   +  H   L+H+ A HL  +  D++ +Q  LGH  +S T+IY  
Sbjct: 120 LDYLMKKYCSMAGIEDKSKHHFHALKHTTAVHLAESDMDIKELQWWLGHKSVSNTEIYFQ 179

Query: 301 VNSK 304
             +K
Sbjct: 180 FTTK 183


>gi|323484510|ref|ZP_08089875.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
 gi|323402088|gb|EGA94421.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
          Length = 280

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 11/134 (8%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G+RISE  S+T Q + +  + +  +GK  ++    LLP  RK +++   L  +    +IQ
Sbjct: 137 GIRISELPSITVQAVKNGVAQVDCKGKNRQV----LLP--RKLLVK---LMHYIRKEHIQ 187

Query: 227 L-PLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
             P+F   +G PL+     + ++++ R  G+       H LRH FA        D+  + 
Sbjct: 188 CGPIFITKQGNPLDRSNIWKEMKKICRLAGVNEKKVFPHNLRHLFAYSFYQMEKDIAKLA 247

Query: 285 SILGHFRLSTTQIY 298
            +LGH  ++TT+IY
Sbjct: 248 DLLGHSNINTTRIY 261


>gi|254776174|ref|ZP_05217690.1| site-specific tyrosine recombinase XerC [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 47

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 4/49 (8%)

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           THLL  G DLR +Q +LGH  L+TTQ+YT+V        +  ++DQ HP
Sbjct: 1   THLLEGGADLRVVQELLGHSSLATTQLYTHVAVSR----LRAVHDQAHP 45


>gi|237718823|ref|ZP_04549304.1| integrase [Bacteroides sp. 2_2_4]
 gi|229451955|gb|EEO57746.1| integrase [Bacteroides sp. 2_2_4]
          Length = 386

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 36/57 (63%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +Y+R+L+   G+    T H  RH+ A+  +S G D+ +++ +LGH  +++T++Y  V
Sbjct: 313 KYVRRLKEKAGIEKDLTYHCSRHTTASLAISAGADISAVKDVLGHGSITSTEVYAKV 369


>gi|328883029|emb|CCA56268.1| hypothetical protein SVEN_2982 [Streptomyces venezuelae ATCC 10712]
          Length = 414

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 73/182 (40%), Gaps = 40/182 (21%)

Query: 165 GCGLRISEALSLTPQNIMDDQSTL-------RIQGK-------GDKIRIVPLLPSVRKAI 210
           GCGLR  E   L+   +  D   L       RI+GK       G K+R VPL PSV  A+
Sbjct: 215 GCGLRQGEVFGLSEDEVDHDGGWLSVEHQLKRIRGKFVFALPKGGKVRDVPLPPSVAAAL 274

Query: 211 LEYYD-LCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYI------------- 247
             + +   P  + L  + P         +F G  G  +    F  ++             
Sbjct: 275 KAHSEKYPPVRITLPWRTPDGPLVTKSLIFTGSAGGHIRVSHFNDFMWKPALAAVGIIPE 334

Query: 248 -RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKN 305
             +  RY   P     H LRH +A+ LL  G ++R++   LGH     T + YT++   +
Sbjct: 335 PEEGERYASAP-EHGMHALRHFYASVLLDAGENIRALSQYLGHADPGFTLRTYTHLMPSS 393

Query: 306 GG 307
            G
Sbjct: 394 EG 395


>gi|289644915|ref|ZP_06476959.1| integrase family protein [Frankia symbiont of Datisca glomerata]
 gi|289505281|gb|EFD26336.1| integrase family protein [Frankia symbiont of Datisca glomerata]
          Length = 138

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 47/100 (47%), Gaps = 8/100 (8%)

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR-QLRRYLG 255
           + I PLL +  +   E     P DL       +F    G PL    F+RY+    R   G
Sbjct: 14  VPIPPLLVAYLRRHREIVPPAPDDL-------VFPDTVGHPLRRSNFRRYVWVPARGKAG 66

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           LP S T H LRH +AT L+S G  +  +Q  LGH   STT
Sbjct: 67  LPTSLTFHALRHCYATWLISEGVPVNVVQVALGHEHASTT 106


>gi|213691190|ref|YP_002321776.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213522651|gb|ACJ51398.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320457248|dbj|BAJ67869.1| putative phage integrase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 487

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 65/154 (42%), Gaps = 10/154 (6%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
           RN  +  L+Y    RI E  +LT +++ MD+ + + I GK  K RIVP+    R+ +  Y
Sbjct: 255 RNRMLPILMYDTAARIGELAALTLEDVRMDEPARITITGKRGKTRIVPMGERTRRHLTSY 314

Query: 214 YD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL--------GLPLSTTAHT 264
            D   P     +   PLF   R   + P    R    L+            +P       
Sbjct: 315 LDEFHPDTDGSDGARPLFHSTRNGTIRPLSVDRIDEILKTAASKARGTCPSMPGRIHCRL 374

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +R + A  L   G  L ++  +LGH  +STT  +
Sbjct: 375 IRRTRAMDLYQQGVPLPTVMQLLGHESMSTTSAF 408


>gi|254450297|ref|ZP_05063734.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264703|gb|EDY88973.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 258

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 59/127 (46%), Gaps = 16/127 (12%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIM--------DDQSTLRI-QGKGDKIRIVPLLPSVRK 208
           A L + YG GLR SE  SL   +I+         D+  + + +GKG K R V L P +  
Sbjct: 107 AALSISYGAGLRASEVCSLKVSDIVPLARLRHDSDRMLIHVDEGKGGKDRKVMLSPDLLD 166

Query: 209 AILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
            + +Y+           +  LF G  +  P++     R     +  +GL    T HTLRH
Sbjct: 167 LLRDYWR------EARPEGWLFPGKPKITPISARQLSRSFNSAKHLVGLSKPATLHTLRH 220

Query: 268 SFATHLL 274
           SFATHLL
Sbjct: 221 SFATHLL 227


>gi|157324990|ref|YP_001468416.1| Int [Listeria phage A500]
 gi|66732998|gb|AAY52817.1| Int [Listeria phage A500]
          Length = 400

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 46/75 (61%), Gaps = 4/75 (5%)

Query: 229 LFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           LF  + GKP+ P  ++QR+ R L R+  LPL    H LRH+ AT LL+ G D++ IQ  L
Sbjct: 312 LFADMEGKPIRPDSIYQRWRRFLERH-NLPL-IRFHDLRHTSATLLLNKGRDIKIIQERL 369

Query: 288 GH-FRLSTTQIYTNV 301
            H   ++T+ IY +V
Sbjct: 370 RHKSSVTTSNIYAHV 384


>gi|157368467|ref|YP_001476456.1| integrase family protein [Serratia proteamaculans 568]
 gi|157320231|gb|ABV39328.1| integrase family protein [Serratia proteamaculans 568]
          Length = 191

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 3/150 (2%)

Query: 155 RNSAILYLLYGCGLRISE--ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           RN+ +L++ +  G R+SE   + L   +I  D   +R    G    + PL P  RK +  
Sbjct: 29  RNTCLLWMCFVHGCRVSELTGMHLADLDIAGDSLYVRRLKNGLST-MQPLHPMERKLLAR 87

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +               LF   +G  L+     R ++ L    GL ++   H LRH+    
Sbjct: 88  WLQRRQSYPGAKDYDWLFLSHKGGRLSRSRIYRILKDLGERAGLSIAVHPHMLRHACGYA 147

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           L   G D R IQ  LGH  +  T +YT  N
Sbjct: 148 LADKGADTRLIQDYLGHRNIQHTVLYTASN 177


>gi|44004490|ref|NP_982158.1| site-specific tyrosine recombinase XerS [Bacillus cereus ATCC
           10987]
 gi|42741556|gb|AAS45001.1| integrase/recombinase, phage integrase family protein [Bacillus
           cereus ATCC 10987]
          Length = 361

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 119/282 (42%), Gaps = 40/282 (14%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           +I I+ +  L   E+  F    +++ I  +++ R+ S +KS  KYL ++      N    
Sbjct: 71  EIPIELLESLPLNEVNRFHMYLKSEGIEIKAINRTFSALKSLFKYLSQKTEDEYGNSYLS 130

Query: 117 RNLKKSNSLPRA-LNEKQALTLVDNVLLHTSHETKWI----------------------- 152
           RN+     L +  ++       V N++ + + +  ++                       
Sbjct: 131 RNVMDKIELHKEKIDAAARADDVANMIFNNNDDAAFLRFLANDYEFILKETSTRKYNYFL 190

Query: 153 --DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
               R+ A++ L+ G GLR+SE  SL+  ++   Q T+++  KG+K   +    S    +
Sbjct: 191 RDKERDIALISLILGTGLRVSELASLSLSSVNFRQKTIKVIRKGNKKSSILATQSSLDDV 250

Query: 211 LEYYDL------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL--RRYLGLPLSTTA 262
            EY  +      CP +     ++      +GK     V  R I+ L  +         + 
Sbjct: 251 QEYLKVRQERYGCPPEE----EIMFVTRYQGKYTQLSV--RAIQNLVDKYTSAFDEKRSP 304

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           H LRH++AT+      DL  ++  LGH  +  T IYTN+N++
Sbjct: 305 HKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNE 346


>gi|325851898|ref|ZP_08171031.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325484675|gb|EGC87589.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 417

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 22/153 (14%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDL 216
            L+ C  GL  ++   LT ++I+ +     I+    K   +  +PLLP    AI+E Y  
Sbjct: 253 FLFSCYTGLSYTDVYHLTAEHIIHESDMDWIRKPRVKTGNLCHIPLLPEA-SAIIERYR- 310

Query: 217 CPFDLNLNIQLPLFRGIRGK----PLNPGV--FQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
                   I    FR    K    P+ PG      +++++ R  G+  + T H  RH+FA
Sbjct: 311 -------GIHTRAFRHEPPKGYLLPI-PGCDTVNIHLKKIARLCGIQKTLTFHMARHTFA 362

Query: 271 THL-LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           + + LS G  + S+  +LGH ++ TTQ+Y   +
Sbjct: 363 SQMTLSEGVSIESVSKMLGHSQIKTTQVYAETS 395


>gi|255690132|ref|ZP_05413807.1| integrase/recombinase, phage integrase family [Bacteroides
           finegoldii DSM 17565]
 gi|260624416|gb|EEX47287.1| integrase/recombinase, phage integrase family [Bacteroides
           finegoldii DSM 17565]
          Length = 327

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 107/253 (42%), Gaps = 29/253 (11%)

Query: 61  QTIRQLSYTEIRAFISKRR----TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           + IR ++  ++R +++  +      K+   +++R LS   SF  +L+      +S +  +
Sbjct: 86  KNIRHITTDDLRNYLNDYQQTSGATKVTVDNIRRILS---SFFSWLEDEDYIVKSPVRRI 142

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             +K   ++          T  D  L       + I  R+ A++ LL   G+R+ E + L
Sbjct: 143 HKVKVGKTVKE--------TYSDEALEQMRDHCEGI--RDLALIDLLASTGMRVGELVKL 192

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
              +I  +     + GKGDK R V    +  K  L+ Y     D N  + + L       
Sbjct: 193 NRNDIDFENRECIVTGKGDKQRRV-YFDARTKIHLQRYLAERIDDNPALFVSLL-----A 246

Query: 237 PLN----PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           P +     GV  R +R+L R L +P     H  R + AT  +  G  +  +Q +LGH  L
Sbjct: 247 PYDRLQISGVEIR-LRRLGRELNIP-KVHPHKFRRTLATMAIDKGMPIEQVQHLLGHQSL 304

Query: 293 STTQIYTNVNSKN 305
            TT  Y  VN  N
Sbjct: 305 DTTLQYAMVNQTN 317


>gi|116255542|ref|YP_771375.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115260190|emb|CAK03294.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 331

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/292 (21%), Positives = 114/292 (39%), Gaps = 22/292 (7%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           Q L  +R +S  T+ SY    + FL F    T +  +   +       + AF+    +++
Sbjct: 15  QRLARQRNVSPHTIASYRDTFKLFLKFAHRRTGKFPSDLRLEDFDAELVVAFLDDLDSER 74

Query: 83  -IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD-- 139
                +    L+ I+SF ++L   +      I      ++  ++P  +  K+ +  +   
Sbjct: 75  HASPATYNLRLTAIRSFFRFLAFEEPAYSGQI------QRILAIPGKIGSKREVQFLTRS 128

Query: 140 --NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDK 196
               +L       W+  R+  ++      G+R+SE + L    + +   + +R  GKG K
Sbjct: 129 EIEAILSAPDRRTWVGRRDYVLMLTAVQTGMRLSELVGLDRSAVTIGTGAHIRCFGKGRK 188

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R  P+   +   +  + D  P   N N   P   G R   ++P   Q  + +       
Sbjct: 189 ERTTPITRMLNVTLKAWLDEPPVG-NGNALFPTVHGGR---MSPDAVQYLLAKYVLTASK 244

Query: 257 PLST------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             S+      + H LRHS A  LL  G D   I   LGH    +TQ Y + +
Sbjct: 245 GCSSLRSKRISPHVLRHSAAMELLDAGVDSTVISLWLGHESTRSTQPYLHAH 296


>gi|116686981|ref|YP_840228.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
 gi|116652696|gb|ABK13335.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
          Length = 559

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 125/314 (39%), Gaps = 62/314 (19%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +ERG  LS LT +    D   +  FL   T     +   R     E R F     T  + 
Sbjct: 248 VERGKALSSLTSE----DATAYRAFLRHPTPRARWVAPARPRPSPEWRPF-----TGALS 298

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSL--PRALNEKQ---ALTL 137
             S+  +LS + +  ++L +++    ++   L +R  +++  L   RA    +     T+
Sbjct: 299 PDSIAYTLSVLSAMFRWLIEQRYVLANSFAGLRVRGAQRNGELDISRAFTAGEWELVRTI 358

Query: 138 VDNVLLHTSHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNI---MDDQSTLRIQ 191
            D   L  SH   W       + ++L   Y  GLR SE + +T   I      +  L + 
Sbjct: 359 ADG--LERSH--GWTVPAAQRLRFVLDFGYATGLRASELVGVTLGGIETGARGERWLHLT 414

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP---------GV 242
           GKG K   V L P    A+ +Y         +   LP+    R +P  P         G+
Sbjct: 415 GKGAKAGKVVLPPLATHALDQYL--------VQRGLPVT-SARWQPDTPLLGHLDAPGGI 465

Query: 243 FQRYIRQ-LRRYL---------------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
               +R+ LRR+                G     T H +RH+ ATH L+NG  L +++  
Sbjct: 466 TTPRLREVLRRFFHAAADAIEADHPALAGKLRRATPHWMRHTHATHALANGATLTTVRDN 525

Query: 287 LGHFRLSTTQIYTN 300
           L H  ++TT IY +
Sbjct: 526 LRHASITTTSIYLD 539


>gi|297163231|gb|ADI12943.1| phage integrase family protein [Streptomyces bingchenggensis BCW-1]
          Length = 354

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 79/185 (42%), Gaps = 17/185 (9%)

Query: 154 ARNSAILYLLYGCGLRISEA---------LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           AR+ A+   LY  GLR  EA          S  P   +  +        G + R VP+L 
Sbjct: 171 ARDYALFRTLYHAGLRSEEASLLEKPDAHFSRGPFGKLHVRFGKGAHTSGPRPRWVPMLD 230

Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-- 260
            +   +L ++  D+ P   +  +   LF    G  L+ G  +  +R L    G P +   
Sbjct: 231 GL-DLVLRWFLEDVRPKFPDSPV---LFADESGGSLHRGTIRNRLRYLMELEGRPTAERF 286

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H LR + ATH    G DL +IQ +LGH+ +S+T  Y   ++    D        T   
Sbjct: 287 SPHALRRACATHNYERGVDLVAIQQMLGHWTVSSTMRYVRPSATFIEDAYQRAVAGTLAE 346

Query: 321 ITQKD 325
           +T+KD
Sbjct: 347 LTEKD 351


>gi|282877655|ref|ZP_06286470.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|307566135|ref|ZP_07628592.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|281300227|gb|EFA92581.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|307345147|gb|EFN90527.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 422

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 73/162 (45%), Gaps = 26/162 (16%)

Query: 167 GLRISEALSLTPQNI---MDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY--DLCPFD 220
           GL   +   L P++I    D    +RI+  K D   I+PLLP + K IL  Y  D    D
Sbjct: 257 GLARVDMQRLKPKHITHNADGTEEIRIKRQKTDVEAIIPLLP-IAKQILSLYIKDKKADD 315

Query: 221 L---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSN 276
           L   NL I+   F  +     N G   R  + L          T H  RH+F+T + LSN
Sbjct: 316 LIFPNLTIRKASFACV-----NIGQICRIDKGL----------TFHMARHTFSTTICLSN 360

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           G  + ++  ILGH  + TTQIY  +      + M  + D+ H
Sbjct: 361 GISMETLSKILGHSNIGTTQIYGKITDHKIQEDMTALTDREH 402


>gi|167752533|ref|ZP_02424660.1| hypothetical protein ALIPUT_00784 [Alistipes putredinis DSM 17216]
 gi|167762652|ref|ZP_02434779.1| hypothetical protein BACSTE_01009 [Bacteroides stercoris ATCC
           43183]
 gi|167659602|gb|EDS03732.1| hypothetical protein ALIPUT_00784 [Alistipes putredinis DSM 17216]
 gi|167699758|gb|EDS16337.1| hypothetical protein BACSTE_01009 [Bacteroides stercoris ATCC
           43183]
          Length = 409

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 20/150 (13%)

Query: 162 LLYGC--GLRISEALSLTPQNIM-DDQSTL---RIQGKGDKIRIVPLLPSVRKAILEYYD 215
            L+ C  G+  ++A+S+T  NI  DD+  L    ++ K + +  V LLP    A++E Y 
Sbjct: 253 FLFACYTGVPYADAVSITGDNIYKDDKGDLWLKYLRKKNEYLARVKLLPEA-IALIEKY- 310

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
                   N +  LF  I     +P + +R+++ LR   G+      H  RH+F + + L
Sbjct: 311 ------RSNDREELFPMIH----HPNM-RRHMKGLRDLAGISCDLVYHMGRHTFGSLITL 359

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             G  + +I  +LGH  L+TTQ+Y  V  K
Sbjct: 360 EAGVPIETISKMLGHTNLTTTQLYARVTPK 389


>gi|153807716|ref|ZP_01960384.1| hypothetical protein BACCAC_01998 [Bacteroides caccae ATCC 43185]
 gi|160886162|ref|ZP_02067165.1| hypothetical protein BACOVA_04169 [Bacteroides ovatus ATCC 8483]
 gi|160889100|ref|ZP_02070103.1| hypothetical protein BACUNI_01521 [Bacteroides uniformis ATCC 8492]
 gi|149129325|gb|EDM20539.1| hypothetical protein BACCAC_01998 [Bacteroides caccae ATCC 43185]
 gi|156108047|gb|EDO09792.1| hypothetical protein BACOVA_04169 [Bacteroides ovatus ATCC 8483]
 gi|156861567|gb|EDO54998.1| hypothetical protein BACUNI_01521 [Bacteroides uniformis ATCC 8492]
          Length = 327

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 107/253 (42%), Gaps = 29/253 (11%)

Query: 61  QTIRQLSYTEIRAFISKRR----TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           + IR ++  ++R +++  +      K+   +++R LS   SF  +L+      +S +  +
Sbjct: 86  KNIRHITTDDLRNYLNDYQQTSGATKVTVDNIRRILS---SFFSWLEDEDYIVKSPVRRI 142

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             +K   ++          T  D  L       + I  R+ A++ LL   G+R+ E + L
Sbjct: 143 HKVKVGKTVKE--------TYSDEALEQMRDHCEGI--RDLALIDLLASTGMRVGELVKL 192

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
              +I  +     + GKGDK R V    +  K  L+ Y     D N  + + L       
Sbjct: 193 NRNDIDFENRECIVTGKGDKQRRV-YFDARTKIHLQRYLAERIDDNPALFVSLL-----A 246

Query: 237 PLN----PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           P +     GV  R +R+L R L +P     H  R + AT  +  G  +  +Q +LGH  L
Sbjct: 247 PYDRLQISGVEIR-LRRLGRELNIP-KVHPHKFRRTLATMAIDKGMPIEQVQHLLGHQSL 304

Query: 293 STTQIYTNVNSKN 305
            TT  Y  VN  N
Sbjct: 305 DTTLQYAMVNQTN 317


>gi|167759261|ref|ZP_02431388.1| hypothetical protein CLOSCI_01608 [Clostridium scindens ATCC 35704]
 gi|167663135|gb|EDS07265.1| hypothetical protein CLOSCI_01608 [Clostridium scindens ATCC 35704]
          Length = 287

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 116/276 (42%), Gaps = 36/276 (13%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           ER  +K T++ Y  D R F  F+      +IT + +  LSY E          +     S
Sbjct: 21  ERENAKATIRKYLTDIRTFYNFMG--ENRRITKEQL--LSYKEWLV-------EHYAISS 69

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD-NVLLHTS 146
           +   L+ +  FL++L   +       L ++ ++   +L     E + +   D   L+ T+
Sbjct: 70  VNSMLAALNQFLEFLGGER-------LKLKRIRVQGTL--LTGEAREMEKTDYKRLVETA 120

Query: 147 HETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            E    + R    L +   C  G+R+SE    T +++      +++  KG K R+VP+  
Sbjct: 121 ME----EGRVQLALMMETMCATGIRVSELEYFTVESL--RSGMVKVWNKG-KYRMVPMPE 173

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAH 263
            ++K +  Y +       +     +FR   G P N     + ++ L    G+ P     H
Sbjct: 174 MLKKNLQRYVEREGIQTGV-----IFRTRNGNPKNRSNIWKEMKSLAGRAGVDPDKIFPH 228

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            LRH FA        +L ++  ILGH  L  T++YT
Sbjct: 229 NLRHLFARTFYKGTNNLVNLAEILGHSSLEITRVYT 264


>gi|313146639|ref|ZP_07808832.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313135406|gb|EFR52766.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 320

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/248 (21%), Positives = 104/248 (41%), Gaps = 23/248 (9%)

Query: 52  FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111
           ++T  K   +   +++    R FI     +K    +++  ++ I+ F K++KK     E 
Sbjct: 77  YHTSMKKYFEYANEVNMDNCRRFIKMLEEEKFAPATIRLRITAIERFSKWMKK---PLEL 133

Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
               M+    +N++P    E +   L++ +   ++ +  +        + +L   G R+S
Sbjct: 134 KRPKMKRKLDTNNVP---TEDEYNRLLEYLKTKSNKDYYFF-------IRVLGTTGARLS 183

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           E L  T ++I+  + TL+  GKG+K R       +++ +  Y   C        +  LF 
Sbjct: 184 EFLQFTWEDIISGEVTLK--GKGNKYRRFFFQKQLQQEVKAYAKECG-------KTGLFA 234

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             R  P+      + ++      G+       H  RH FA   L    D+  +  +LGH 
Sbjct: 235 VGRFGPMTQRGLSQGMKAWGNCCGIDKKKMHPHAFRHFFAKMFLKKNKDVIQLADLLGHG 294

Query: 291 RLSTTQIY 298
            + TT+IY
Sbjct: 295 SVDTTRIY 302


>gi|189460579|ref|ZP_03009364.1| hypothetical protein BACCOP_01220 [Bacteroides coprocola DSM 17136]
 gi|189432823|gb|EDV01808.1| hypothetical protein BACCOP_01220 [Bacteroides coprocola DSM 17136]
          Length = 149

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 45/85 (52%)

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           G+    LN     + ++Q+ R  G+  + + H+ RH FAT  LS G  + S+  +LGH  
Sbjct: 53  GLVFPSLNYWSICKPLKQMIRECGISKNISFHSSRHGFATLALSKGVPIESVSRVLGHTN 112

Query: 292 LSTTQIYTNVNSKNGGDWMMEIYDQ 316
           ++TTQ Y  + ++N   ++    D+
Sbjct: 113 ITTTQKYCKITTENIDKYLTMFADR 137


>gi|189017167|ref|YP_001909484.1| Predicted phage integrase [Erwinia tasmaniensis Et1/99]
 gi|188027104|emb|CAO94888.1| Predicted phage integrase [Erwinia tasmaniensis Et1/99]
          Length = 299

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 31/46 (67%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           ++ T HT RHSFA HLL +G   ++IQ +LGH    +T++YT V S
Sbjct: 230 ITVTPHTFRHSFAMHLLMSGVPEKTIQGLLGHRYARSTEVYTRVFS 275


>gi|163846861|ref|YP_001634905.1| integrase domain-containing protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222524682|ref|YP_002569153.1| integrase domain-containing protein SAM domain-containing protein
           [Chloroflexus sp. Y-400-fl]
 gi|163668150|gb|ABY34516.1| integrase domain protein SAM domain protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222448561|gb|ACM52827.1| integrase domain protein SAM domain protein [Chloroflexus sp.
           Y-400-fl]
          Length = 317

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/307 (20%), Positives = 131/307 (42%), Gaps = 46/307 (14%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++ E + +L +L+ + GLS  T+ SY CD R   + L+         Q +  ++  +I+ 
Sbjct: 15  IISELEQFLHDLKCDDGLSDNTITSYRCDLRTAGLALS---------QELSAITTADIQQ 65

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+++R+ Q     +  R ++ +  F ++  +R   T + +  +     +   P+ +  + 
Sbjct: 66  FLARRQEQP---GTTNRRIASLGRFFRWALERGYVTHNPVEQIDGRLPTEHRPQPITNEA 122

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQ 191
            L  +D  +       +        I  +L   G+R  E L+L   +++    +  L +Q
Sbjct: 123 ELRALDQAIAAAPQPYRL-------IFTMLREIGIRTDEVLNLNVGDVILEPGREMLLVQ 175

Query: 192 -GKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLN-PGVFQRYI- 247
             K    R++ L P      L    +   D+ +   + PLFR  RG  ++   + +R++ 
Sbjct: 176 DSKSGSKRMIVLTPDAMPRSLRGLRVWVRDMEDAAPETPLFRSSRGTRVSYDTLHRRWVA 235

Query: 248 -------------RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
                        R+  RY       T H LRH+ A  L++   + + ++ ILGH    +
Sbjct: 236 VCKAARLIDIVDGREQPRY-------TLHHLRHTAAAELIAFYPE-QVVRRILGHRDPRS 287

Query: 295 TQIYTNV 301
           T+ Y+ +
Sbjct: 288 TRRYSEL 294


>gi|325840448|ref|ZP_08167047.1| site-specific recombinase, phage integrase family [Turicibacter sp.
           HGF1]
 gi|325490315|gb|EGC92644.1| site-specific recombinase, phage integrase family [Turicibacter sp.
           HGF1]
          Length = 371

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 3/75 (4%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G P+NP  F   I ++ + L +P+    H LRH+ AT LL +  +++ IQ  LGH  +ST
Sbjct: 288 GTPINPKRFSTQINRISKRLNIPIK--FHNLRHTHATLLLESDVNIKVIQERLGHSDIST 345

Query: 295 T-QIYTNVNSKNGGD 308
           T  +Y++V  K   +
Sbjct: 346 TLNVYSHVTQKTEAE 360


>gi|317009814|gb|ADU80394.1| bacteriophage-related integrase [Helicobacter pylori India7]
          Length = 382

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 21/153 (13%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK------------IRIVPL 202
           R  A L + +  GLR  E L+L  ++I  ++ T+ I    ++            +R V L
Sbjct: 216 RLKAFLMVAFFTGLRTGEQLALMWEDIDFNEKTIIINKSLNELGQITSPKNKPSVREVDL 275

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           L  V K + E  +  P +        +F  +   P    VFQR+ ++L + L L      
Sbjct: 276 LEPVEKILKELKESEPANKKF-----VFIDM---PKRSSVFQRHFKKLLKALNLE-DRKL 326

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           +T RH+FA+ +LS G +   +  +LGH  L+TT
Sbjct: 327 YTTRHTFASLMLSQGEEAMWVSKMLGHKDLNTT 359


>gi|317480894|ref|ZP_07939975.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902979|gb|EFV24852.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 356

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 30/149 (20%)

Query: 163 LYGC--GLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           L+ C  GLR+S+ + L  +NI+   D    + I  K  K     +LP   +A+     LC
Sbjct: 203 LFSCLTGLRLSDCIRLQWENIIKLADGGWGMDIITK--KTSTAAILPISEEAL----QLC 256

Query: 218 PFDLNLNIQLPLFRGIRG-----KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                         G RG     K L       Y++   +  G+    T H  RH+FAT 
Sbjct: 257 --------------GERGTGQVFKNLTNSTVTLYLKPWIKASGIEKHITFHCFRHTFATL 302

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            L+ G D+ ++  +L H  L+TTQ+Y +V
Sbjct: 303 QLAEGTDIYTVSKLLTHSNLATTQVYADV 331


>gi|134278599|ref|ZP_01765313.1| site-specific recombinase, phage integrase family protein
           [Burkholderia pseudomallei 305]
 gi|134250383|gb|EBA50463.1| site-specific recombinase, phage integrase family protein
           [Burkholderia pseudomallei 305]
          Length = 561

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 125/310 (40%), Gaps = 57/310 (18%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +ERG  LS LT      D   +  FL   T  +  +   R   + E R F     T  + 
Sbjct: 252 VERGCALSSLTTD----DAIAYRSFLRRPTPRERWVGPSRPRHHIEWRPF-----TGPLS 302

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMR---NLKKSN-SLPRALNEKQAL---TL 137
            RS   +L+ + +  ++L +++    +    ++   +++++   + R   E + L   TL
Sbjct: 303 ARSAAYALNVLSALFRWLVEQRYVLANPFAGVKIKSHVQRAGLDMSRGFTEGEWLLIRTL 362

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKG 194
            D +             R   +L   Y  GLR SE +S T  +I  D+     L + GKG
Sbjct: 363 ADGLEWSYGWSAP-AAQRLRFVLDFGYATGLRASELVSATLGDIRRDEHGDHWLHVLGKG 421

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ---------- 244
            K+  V  LPS+ +  L+ Y        +   LP+    R  P  P V            
Sbjct: 422 GKLGKV-ALPSLARTALDQY-------LVQRGLPVTPA-RWNPATPLVVSLDEDGAGIES 472

Query: 245 -RYIRQLRRYLGL---------PLST------TAHTLRHSFATHLLSNGGDLRSIQSILG 288
            R  R LRR+  L         P +       + H LRHS A+H L+ G +L +++  L 
Sbjct: 473 TRLWRVLRRFFVLVADVLPSERPATAEKLRRASPHWLRHSHASHALARGAELITVRDNLR 532

Query: 289 HFRLSTTQIY 298
           H  +STT  Y
Sbjct: 533 HASISTTSTY 542


>gi|29349957|ref|NP_813460.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341868|gb|AAO79654.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 372

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 14/146 (9%)

Query: 163 LYGC--GLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           L+ C   LRIS+ L+L  + I+D  +  + +     K +   ++P   +A          
Sbjct: 224 LFSCLTSLRISDILTLRWEEIVDFAAGGKCVHTVTQKTKTEDIIPISDEA---------- 273

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
            L L    P   G+  K L     Q  +++  R  G+  + T H+ R +FAT   + G D
Sbjct: 274 -LQLIGYSPEKTGLVFKGLKRCWTQYPMKEWIRAAGITKNITFHSYRRTFATLQAAAGTD 332

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKN 305
           +R+IQSI+ H  ++TTQ Y  V   N
Sbjct: 333 IRTIQSIMAHKSITTTQRYMKVVDSN 358


>gi|300854166|ref|YP_003779150.1| putative phage-like integrase [Clostridium ljungdahlii DSM 13528]
 gi|300434281|gb|ADK14048.1| putative phage-related integrase [Clostridium ljungdahlii DSM
           13528]
          Length = 121

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 8/108 (7%)

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGLP 257
           +PLL +++ A+L+Y      D   +I   +F GIR  G+ L      R + +      + 
Sbjct: 1   MPLLENIKYALLDYLKNSRPDTKSDI---IFIGIRNGGRQLTNTCIHRIVSKYFIKSNID 57

Query: 258 LST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +S      H +RHS A++LL N   +  I+ +LGH  L+TT++Y N+N
Sbjct: 58  ISKRKHGPHAMRHSLASNLLHNNTPMHIIKEVLGHSNLNTTRMYLNIN 105


>gi|294919371|ref|XP_002778525.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239887015|gb|EER10320.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 122

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 51  VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 94


>gi|323963811|gb|EGB59309.1| phage integrase [Escherichia coli M863]
          Length = 123

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 55  TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 95


>gi|315149122|gb|EFT93138.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0012]
          Length = 309

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 13/147 (8%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212
            + L+   GLR SEAL+LTP++    +  + I+   +         S       RK  ++
Sbjct: 141 FILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNSTGFFQSTKNESSKRKVQID 200

Query: 213 YYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +     F     N+    P+F  ++G+  N  +  R ++ L +   +P+  T H+LRH+ 
Sbjct: 201 WQTAMQFSQLIRNMPPMEPIF--VKGRVFNSTINSR-LKVLCKRAQIPV-ITVHSLRHTH 256

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           A+ LL  G  + S+ + LGH  ++TTQ
Sbjct: 257 ASLLLFAGVSIASVATRLGHSSMTTTQ 283


>gi|237722683|ref|ZP_04553164.1| mobilizable transposon [Bacteroides sp. 2_2_4]
 gi|229448493|gb|EEO54284.1| mobilizable transposon [Bacteroides sp. 2_2_4]
          Length = 386

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 69/155 (44%), Gaps = 30/155 (19%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
            L+ C  GLR S+   LT   +         Q  GD  RIV      +    EY      
Sbjct: 239 FLFSCLTGLRKSDIQKLTWSEV---------QKFGDYTRIV--FKQKKTGGQEY------ 281

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIR------QLRRY---LGLPLSTTAHTLRHSFA 270
            L+++ Q   + G RG P +  VF  +        +L+R+     +  + T H  RH+FA
Sbjct: 282 -LDISSQAEKYLGERGNPEDL-VFTGFTYGAWTSLELQRWSMAANINKNLTFHCGRHTFA 339

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             +L  G D+ ++  +LGH  L+TTQIY  V  KN
Sbjct: 340 VLMLDLGADIYTVSKLLGHKELATTQIYAKVLDKN 374


>gi|200388050|ref|ZP_03214662.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|199605148|gb|EDZ03693.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
          Length = 337

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 23/143 (16%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQST-LRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           I  +    G R SEA     +N+   Q T  RI  K  K R V  +P  +    E Y+  
Sbjct: 198 IAKICLATGARWSEA-----ENLEGSQVTPYRITYKNTKSRKVRSIPISK----ELYN-- 246

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
                   ++P  RG    P     F+R +   +  + LP     H LRH+FA+H + NG
Sbjct: 247 --------EIPKKRGQLFTPCRK-TFERTV--AKAGIELPEGQCTHVLRHTFASHFMMNG 295

Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300
           G++  ++ ILGH  +  T IY +
Sbjct: 296 GNILVLKEILGHSDIKMTMIYAH 318


>gi|167751073|ref|ZP_02423200.1| hypothetical protein EUBSIR_02058 [Eubacterium siraeum DSM 15702]
 gi|167655991|gb|EDS00121.1| hypothetical protein EUBSIR_02058 [Eubacterium siraeum DSM 15702]
          Length = 244

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 96/236 (40%), Gaps = 54/236 (22%)

Query: 116 MRNLKKSNSLPR----ALNEKQALTLVDNVLLHTSHETK-WIDARNSAILYLLYGCGLRI 170
           M ++KKS++  +    AL E+Q    V+      S++ K W+      +  +L G G RI
Sbjct: 1   MADIKKSHTWEKPKRHALTEQQQEKFVE--FTTQSYQYKHWL-----PLFTVLLGTGGRI 53

Query: 171 SEALSLT------PQNIMDDQSTLRIQGKGDK--------------IRIVPLLPSVRKAI 210
            E L L       P +I++   TL  +   D+              +RI+P+L  V+ A+
Sbjct: 54  GEILGLRWEDCDFPNSIININHTLIYRKYTDEASHFAITTPKTKSGVRIIPMLSDVKAAL 113

Query: 211 LEYYDLCPFDLNLNIQLP------LFRGIRGKPLNPGVFQR---------------YIRQ 249
            E Y     +   N  +       +F+      L+P    R               Y + 
Sbjct: 114 TEEYKE-QLESGFNESVVDGYSGFIFKSRDNTVLSPHCVNRAIDWIIKACNAKEEEYAKA 172

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            RR   L    + H LRH+F T    N  +L+ IQ I+GH  ++TT    N  +K+
Sbjct: 173 ERREPELLPHFSCHHLRHTFCTRFCENETNLKIIQEIMGHADITTTMDIYNEATKD 228


>gi|157371111|ref|YP_001479100.1| integrase family protein [Serratia proteamaculans 568]
 gi|157322875|gb|ABV41972.1| integrase family protein [Serratia proteamaculans 568]
          Length = 198

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 1/150 (0%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
           R+S ++++ +  G R+SE   L   ++ M+       + K     I PL  + +  +  +
Sbjct: 31  RDSCLIWMGFIHGCRVSELNGLRMADLDMESGCVYMNRLKNGLSTIHPLETTEKNLLTRW 90

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            +      NL  +  LF   +G  L+     R ++   +  GL +    H LRH+    L
Sbjct: 91  LEKRRSCRNLEDEEWLFLSQKGYRLSRQRIYRMLQAYGKQAGLDVDAHPHMLRHACGYAL 150

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             NG D R IQ  LGH  +  T +YT  N+
Sbjct: 151 ADNGADTRVIQDYLGHRNIQHTVLYTAANA 180


>gi|38637713|ref|NP_942687.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527051|gb|AAP85801.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 415

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 112/247 (45%), Gaps = 20/247 (8%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL---KKRKITTESNILNMRNLKK 121
           +L+  ++R FI ++  +K G  + K   + ++  +++L    K     E+ I  + +   
Sbjct: 163 KLNAMDLRQFILEQSMKK-GWAAAKHCTTALRMLVRFLIAEGKCAAGLEAAIPVLAHWSL 221

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           S +LPR L     L  V+ V+      +  +  R+ AIL LL   GLR  +   L   +I
Sbjct: 222 S-TLPRYLQ----LDEVERVIASCDTASP-VGQRDRAILLLLARLGLRAGDIWHLRIGDI 275

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKP 237
               +++ + GK  +  ++PL   V +AI++Y          D         F+      
Sbjct: 276 DWKDASISVSGKNGRQTLLPLTQEVGQAIVDYLRQGRPRTDTDTVFVRACAPFQAF---- 331

Query: 238 LNPGVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            N       +++  R  G+  S+   AH LRHS AT +L  G  L+ I ++L H  ++TT
Sbjct: 332 ANHAAISIIVKKAMRRAGVVCSSRGAAHVLRHSVATSMLGQGASLQDIAAVLRHQSVATT 391

Query: 296 QIYTNVN 302
           QIY  V+
Sbjct: 392 QIYAKVD 398


>gi|290474039|ref|YP_003466913.1| integrase [Xenorhabdus bovienii SS-2004]
 gi|289173346|emb|CBJ80123.1| Integrase [Xenorhabdus bovienii SS-2004]
          Length = 354

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 25/144 (17%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I+ +    G R SEA  LT   I   + T   + KG + R VP+         E YD  P
Sbjct: 194 IVKIALSTGARWSEAAGLTDSQITPYKITF-TKTKGKRNRTVPITK-------ELYDEIP 245

Query: 219 FDLNLNIQLPLFRGIRGKPLNP--GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
                          +GK  +     F+  ++Q    + LP   ++H +RH+FA+H + +
Sbjct: 246 -------------KRKGKLFSSCYNAFRTAVKQAG--IELPSHQSSHVMRHTFASHFMMS 290

Query: 277 GGDLRSIQSILGHFRLSTTQIYTN 300
           GG++  +Q ILGH  +  T  Y +
Sbjct: 291 GGNIIVLQRILGHTDIKMTMRYAH 314


>gi|257417156|ref|ZP_05594150.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
 gi|257158984|gb|EEU88944.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
          Length = 309

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 13/147 (8%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212
            + L+   GLR SEAL+LTP++    +  + I+   +         S       RK  ++
Sbjct: 141 FILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGFFQSTKNESSKRKVQID 200

Query: 213 YYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +     F     N+    P+F  ++G+  N  +  R ++ L +   +P+  T H+LRH+ 
Sbjct: 201 WQTAMQFSQLIRNMPPMEPIF--VKGRVFNSTINSR-LKVLCKRAQIPV-ITVHSLRHTH 256

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           A+ LL  G  + S+ + LGH  ++TTQ
Sbjct: 257 ASLLLFAGVSIASVATRLGHSSMTTTQ 283


>gi|255690122|ref|ZP_05413797.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM
           17565]
 gi|260624404|gb|EEX47275.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM
           17565]
          Length = 337

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 18/148 (12%)

Query: 163 LYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           L+ C   LRIS+ L+L  ++I+D  +       G K   V ++    KA     D+ P  
Sbjct: 189 LFSCMTSLRISDILALCWEDIVDYSA-------GGKC--VHIITQKNKA----EDIIPIS 235

Query: 221 ---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
              L L       +G+  K L     Q  +++  R  G+  + T H+ R +FAT   + G
Sbjct: 236 EEALGLIGYSSEKKGLVFKGLMRSWTQAPMKEWIRSAGITKNITFHSYRRTFATLQAAAG 295

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            D+R+IQSI+ H  ++TTQ Y  V   N
Sbjct: 296 TDIRTIQSIMAHKSITTTQRYIKVVDAN 323


>gi|312129828|ref|YP_003997168.1| integrase family protein [Leadbetterella byssophila DSM 17132]
 gi|311906374|gb|ADQ16815.1| integrase family protein [Leadbetterella byssophila DSM 17132]
          Length = 405

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 26/164 (15%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQ----STLRIQGKGDKIRIVPL------------ 202
            ++ +Y  GLR S+ +SL  ++    +     T+R  G+    +I  +            
Sbjct: 239 FIFSVYAGGLRFSDVVSLKWEHYNKKEQRITKTIRKTGRNHNFKIGQIAIDILNKYKTEI 298

Query: 203 -LPS-VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
            LPS     I+E  D+  FD + + Q  +   I  K +  G   + +R+L + + LP + 
Sbjct: 299 SLPSDFVFPIIE--DVERFDADTDYQAYI---INAKNILCG---QKLRRLGKDMELPFTL 350

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + H  RH+FAT+ L+NG  +  +  +L H  +  TQIY  V S+
Sbjct: 351 SFHLSRHTFATNALNNGMRIEYVSKLLDHSDIGITQIYAKVISE 394


>gi|296164229|ref|ZP_06846822.1| site specific recombinase XerD [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295900420|gb|EFG79833.1| site specific recombinase XerD [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 342

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 102/239 (42%), Gaps = 29/239 (12%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S++R  S   +   +L   ++   + +  +   K   SLP+ L  +    L+  +     
Sbjct: 88  SIRRCWSTWNTLCAFLYTDELIPSNPMPLIGRPKVPKSLPKGLGTETVSGLLAAIDADAG 147

Query: 147 HE--TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-----LRIQGKGDKIRI 199
            +  + W + R++A++      GLR  E L     N+ D ++T     + ++GKG+K R 
Sbjct: 148 SQRRSDWPE-RDAALVLTAVLAGLRADELLR---ANVGDIRTTTEGGVIHVRGKGNKDRR 203

Query: 200 VPLLPSVRKAILEYYDL----CPFD-----LNLNI-----QLPLFRGIRGKPLNPGVFQR 245
           +P+  ++ K +  Y D      P D      ++ I        LF G  G  +  GV Q 
Sbjct: 204 IPVEEALIKVLETYLDSRAVRFPADTKRRGASVGIGAWPTTAALFVGSTGDRITRGVLQY 263

Query: 246 YIRQLRRYLGL----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            + +  +  GL          H LRH FAT L ++   +  +  +LGH  + T+Q Y +
Sbjct: 264 RVLRAFKKAGLNSQRARGAMVHALRHEFATQLANSDTSVYVLMKLLGHESMVTSQRYVD 322


>gi|282892190|ref|ZP_06300661.1| hypothetical protein pah_c212o013 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497924|gb|EFB40272.1| hypothetical protein pah_c212o013 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 313

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 126/285 (44%), Gaps = 24/285 (8%)

Query: 27  IERGLSKLTLQSYECDT--RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           IER +S +  ++   DT  RQ   F   +  E+ +  ++ +++  +I A+          
Sbjct: 23  IERFISSIDAKANSKDTYKRQIKPFFE-WVSERYSFNSLHKMTQQDIFAYKEFLVRDGKS 81

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKKSNSLPR-ALNEKQALTLVDNVL 142
             ++   L+ ++ F ++L+  KI    NI  +++ LKK     +  L  +Q  T + +  
Sbjct: 82  AYTISGYLTAVRKFFEWLESNKIF--PNIAKSVKGLKKPKGFRKDCLTVEQIRTALSSFD 139

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKG--DKIR 198
           + TS        R+ A+  LL   GLR  E    T  ++  +  ++ L+IQGKG   K  
Sbjct: 140 VETSD-----GLRDYALFNLLVRTGLRTVEISRATVGDLRQESGEAILQIQGKGRDSKDD 194

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI----RGKPLNPGVFQRYIRQLRRYL 254
            V L+    + + +Y         L+ + PLF        G+PL        I++  R +
Sbjct: 195 FVLLVDETLRPLRKY---LASRGALSEKDPLFSSTSNRTNGEPLKERTISWIIKETLRRI 251

Query: 255 GLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            +  S  TAH+LRH+  +  + NG  L   Q++  H    TT IY
Sbjct: 252 DIDDSRLTAHSLRHTAVSLSIKNGASLIQAQAMARHSDPKTTMIY 296


>gi|238755955|ref|ZP_04617281.1| Resolvase [Yersinia ruckeri ATCC 29473]
 gi|238705807|gb|EEP98198.1| Resolvase [Yersinia ruckeri ATCC 29473]
          Length = 259

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 30/44 (68%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T HT RHS+A HLL  G  L+ +QS++GH  L +T++YT +
Sbjct: 187 VPVTPHTFRHSYAMHLLYAGVPLKVLQSLMGHKSLKSTEVYTRI 230


>gi|221198562|ref|ZP_03571607.1| phage integrase family protein [Burkholderia multivorans CGD2M]
 gi|221207791|ref|ZP_03580798.1| phage integrase family protein [Burkholderia multivorans CGD2]
 gi|221172288|gb|EEE04728.1| phage integrase family protein [Burkholderia multivorans CGD2]
 gi|221181013|gb|EEE13415.1| phage integrase family protein [Burkholderia multivorans CGD2M]
          Length = 575

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 128/320 (40%), Gaps = 70/320 (21%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +ERG  LS LT +    D   +  FL   T  +  I  +R     + R F     +  + 
Sbjct: 258 VERGRALSSLTTE----DALAYRTFLRRPTPHERWIGPVRPRGAPDWRPF-----SGALS 308

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSLPRALNEKQALTLVDNVL 142
            RS   +LS + +  ++L +++    +    + +R+ + ++    AL+   A T  + +L
Sbjct: 309 ARSAAYALSVLGAMFRWLIEQRYVLANPFAGVKVRDTRGAS----ALDTSHAFTEGEWLL 364

Query: 143 LHT---SHETKWIDA-----------RNSAILYLLYGCGLRISEALSLTPQNIMDD---Q 185
           + T     E +  D            R   IL   Y  GLR SE +  T  +I  D    
Sbjct: 365 VRTIADGLEFRKTDVPAAAWTPAAAQRLRFILDFGYATGLRASELVGATLGDIDTDAHGD 424

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP----- 240
           + L++ GKG K   V L P  R A+  Y         +  +LP+   +R +P  P     
Sbjct: 425 AWLKVVGKGSKAARVALPPLARTALDRYL--------VARRLPVT-PVRWRPDTPLIPRL 475

Query: 241 --------------GVFQRYIRQLRRYLGL--PL------STTAHTLRHSFATHLLSNGG 278
                          V QR+  Q    +    P         + H +RH+ ATH L+ G 
Sbjct: 476 TEDGAAPITSVRLWKVMQRFFVQTADLIEADNPALAQKLRQASPHWMRHTHATHALARGA 535

Query: 279 DLRSIQSILGHFRLSTTQIY 298
           +L +++  L H  +STT IY
Sbjct: 536 ELTTVRDNLRHASISTTSIY 555


>gi|323694873|ref|ZP_08109025.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
 gi|323501067|gb|EGB16977.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
          Length = 280

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 11/134 (8%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G+RISE  S+T Q + +  + +  +GK  ++    LLP  RK +++   L  +    +IQ
Sbjct: 137 GIRISELPSITVQAVKNGVAEVDCKGKNRQV----LLP--RKLLVK---LMYYIRKEHIQ 187

Query: 227 L-PLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
             P+F   +G PL+     + ++++ R  G+       H LRH FA        D+  + 
Sbjct: 188 CGPIFITKQGNPLDRSNIWKEMKKICRLAGVNEKKVFPHNLRHLFAYSFYQMEKDIAKLA 247

Query: 285 SILGHFRLSTTQIY 298
            +LGH  ++TT+IY
Sbjct: 248 DLLGHSNINTTRIY 261


>gi|295841268|dbj|BAJ07038.1| integrase [uncultured bacterium]
          Length = 249

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 88/206 (42%), Gaps = 52/206 (25%)

Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           T   ++ +  + KKS  LP  LN ++           T+   K +      +  LLYG G
Sbjct: 57  TALGDLGDFAHSKKSRRLPVVLNWRE-----------TARLFKQLKGTQKLVSGLLYGSG 105

Query: 168 LRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVRKAILEYY----------D 215
           LR+ EAL L  ++I  D  Q T+R  GKG K R+  +LP+  ++ LE +          D
Sbjct: 106 LRLMEALRLRVKDIDFDLMQITVR-DGKGKKDRVT-VLPARYRSSLEGHLGKVRAVHRLD 163

Query: 216 L------CPFDLNLNIQLP-----------------LFR----GIRGKPLNPGVFQRYIR 248
           L        F  +L+++ P                 LF     G+    L+    QR +R
Sbjct: 164 LENSYLGATFWPSLSLKYPHAPRQWIWQYVFPAARLLFDREAGGVLRHHLHETSLQRAVR 223

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLL 274
           Q      +    T HTLRHSFATHLL
Sbjct: 224 QASVRADISKRVTCHTLRHSFATHLL 249


>gi|257439570|ref|ZP_05615325.1| transposase [Faecalibacterium prausnitzii A2-165]
 gi|257198017|gb|EEU96301.1| transposase [Faecalibacterium prausnitzii A2-165]
          Length = 417

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 35/167 (20%)

Query: 162 LLYGCGLRISEALSLTPQNI-MD------DQSTLRIQGKGDKI---------RIVPLLPS 205
           +L G GLRISE   LT  +I +D      D   L+I   G  +         R++P+   
Sbjct: 238 ILLGTGLRISELCGLTEADIDLDKQLINVDHQLLKIADVGYYVETPKTKSGNRVIPMSEK 297

Query: 206 VRKA--------------ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           V +A              ILE Y    F LN N  LP    +  + +  G+ ++Y +  +
Sbjct: 298 VLEAFQRVLNKRKYAQPVILEGYTKFLF-LNRN-GLPKV-AVNYESMFRGLVRKYTKTQK 354

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             + LP   T HTLRH+F T L + G + +++Q I+GH  ++ T  Y
Sbjct: 355 --VALPKVMTPHTLRHTFCTTLANAGMNPKALQYIMGHSNINMTLNY 399


>gi|229035345|ref|ZP_04189251.1| Integrase [Bacillus cereus AH1271]
 gi|228727958|gb|EEL79028.1| Integrase [Bacillus cereus AH1271]
          Length = 364

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 72/328 (21%), Positives = 137/328 (41%), Gaps = 51/328 (15%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLA----------FYTE-EKITIQTIRQLSYTE 70
           ++ +E++  LS  TL  Y  +  +F  ++             TE  +I I+ +  L   E
Sbjct: 28  VEYIEMKAMLSPATLYGYITEFEKFFKWMIEKRIAVINGNVATEIHEIPIELLESLPLNE 87

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-L 129
           +  F    +++ I  +++ R+ S +KS  KYL ++      N    RN+     L +  +
Sbjct: 88  VNRFHMYLKSEGIEIKAINRTFSALKSLFKYLSQKTEDEYGNSYLSRNVMDKIELHKEKI 147

Query: 130 NEKQALTLVDNVLLHTSHETKWI-------------------------DARNSAILYLLY 164
           +       V N++ + + +  ++                           R+ A++ L+ 
Sbjct: 148 DAAARADDVANMIFNNNDDAAFLRFLANDYEFILKETSTRKYNYFLRDKERDIALISLIL 207

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL------CP 218
           G GLR+SE  SL+  ++   Q T+++  KG+K   +    S    + EY  +      CP
Sbjct: 208 GTGLRVSELASLSLSSVNFRQKTIKVIRKGNKKSSILATQSSLDDVQEYLKVRQERYGCP 267

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL--RRYLGLPLSTTAHTLRHSFATHLLSN 276
            +     ++      +GK     V  R I+ L  +         + H LRH++AT+    
Sbjct: 268 PEE----EIMFVTRYQGKYTQLSV--RAIQNLVDKYTSAFDEKRSPHKLRHTYATNHYKE 321

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             DL  ++  LGH  +  T IYTN+N++
Sbjct: 322 NKDLVLLRDQLGHTSVEVTSIYTNINNE 349


>gi|332654353|ref|ZP_08420097.1| transposase [Ruminococcaceae bacterium D16]
 gi|332517439|gb|EGJ47044.1| transposase [Ruminococcaceae bacterium D16]
          Length = 399

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 92/219 (42%), Gaps = 46/219 (21%)

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           A+  KQ   L+   +    H +++ DA     +Y+L+  GLRISE   LT   I   +  
Sbjct: 191 AITRKQQRDLL-KFIQEDKHFSRYYDA-----IYILFHTGLRISEFCGLTVSEIEFGEMR 244

Query: 188 LRI---------------QGKGDK-IRIVPLL----------------PSVRKAILEYYD 215
           +++               + K DK IR VP+                 P V   +  Y  
Sbjct: 245 IKVDHQLQRTAQMQYVIEEPKTDKGIRYVPMTEAVAACFRRIIANRKTPKVEPMVEGYAG 304

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
               D N    +P+   +  +     + Q+Y R  R  + +P   T H  RH+F +++  
Sbjct: 305 FLFLDKN---DMPMV-ALHWEKYLEHIIQKYNRIYR--IQMP-KVTPHVCRHTFCSNMAK 357

Query: 276 NGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           +G + +++Q I+GH  +S T   YT+VN  +  + +  I
Sbjct: 358 SGMNPKTLQYIMGHADISVTLNTYTHVNFDDAKEEVYRI 396


>gi|188579610|ref|YP_001923055.1| integrase family protein [Methylobacterium populi BJ001]
 gi|179343108|gb|ACB78520.1| integrase family protein [Methylobacterium populi BJ001]
          Length = 229

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 71/149 (47%), Gaps = 20/149 (13%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----KGDKIRIVPLLPSVRKAILEY- 213
            L L Y  G R+SEAL+LT  ++      + +      +   +R VP+ P    AIL++ 
Sbjct: 82  CLILAY-TGCRLSEALALTHADLDQAGGIVSLHCLKKRRTGIVRDVPV-PEGVMAILDFV 139

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-HTLRHSFATH 272
           +DL P +  L    P  R           +QR I+ + R  G+  S  +   LRH+F  H
Sbjct: 140 HDLEPSERRL---WPFKRST--------AWQR-IKTVMREAGVSASAASPKGLRHAFGVH 187

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            L +G  L  +Q  LGH  LSTT IY +V
Sbjct: 188 ALRSGVPLTLLQRWLGHASLSTTAIYADV 216


>gi|54027895|ref|YP_122135.1| putative recombinase [Nocardia farcinica IFM 10152]
 gi|54019403|dbj|BAD60771.1| putative recombinase [Nocardia farcinica IFM 10152]
          Length = 358

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 79/169 (46%), Gaps = 24/169 (14%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQ-GKG-----DKIRIVPLLP 204
           ARN  +  L    GLR++EA  L   +I   +     L ++ GKG      + R+VPL+ 
Sbjct: 166 ARNYMVARLAADVGLRVNEACMLDLDDIRWELGRFGKLNVRHGKGAFRSGPRQRLVPLIN 225

Query: 205 SVRKAILEYYD--LCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQ-LRRYLG----- 255
               A+  + +     FD +  + + PLF   R +  + G   R  R  +RR LG     
Sbjct: 226 GADTALTWFVEDVWAQFDADETLPRAPLFPSERRRAGSSGT--RVTRDVIRRALGGAVDR 283

Query: 256 -LPLST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            LP  +   T H LRH  A+ L   G D+ +IQ +LGH  ++TT  Y +
Sbjct: 284 HLPTWSGRLTPHVLRHYCASQLYRTGVDILAIQELLGHSWITTTMRYVH 332


>gi|326382372|ref|ZP_08204064.1| phage integrase family protein [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199102|gb|EGD56284.1| phage integrase family protein [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 368

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 247 IRQLRRY---LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +R++RRY   +G+P     H+ R S+ATHLL +  D R +Q  +GH   STT IY
Sbjct: 281 LRRVRRYCTDVGIPEGVDLHSFRRSYATHLLEDDWDPRFVQDQMGHEYASTTGIY 335


>gi|218263977|ref|ZP_03477908.1| hypothetical protein PRABACTJOHN_03598 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222388|gb|EEC95038.1| hypothetical protein PRABACTJOHN_03598 [Parabacteroides johnsonii
           DSM 18315]
          Length = 389

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 14/144 (9%)

Query: 162 LLYGC--GLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            L+ C  GLR+S+  SLT   I+   D  TL I+ +  K + +  +P  ++A+   Y   
Sbjct: 238 FLFSCFTGLRLSDVRSLTWGKIIKAPDGHTLYIRVRMQKTQKLLNVPLSKEALDCLY--- 294

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
           P D   +   P+F      P      +R + +  +   +    T H  RHSFAT +L+ G
Sbjct: 295 PKD---DADEPIF----TLPAGASNIERNLTKWMQNAKITKHITYHCSRHSFATMMLTLG 347

Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301
            D+ +   +LGH  ++TT IY  +
Sbjct: 348 ADIYTTSKLLGHANVNTTSIYAKI 371


>gi|210619629|ref|ZP_03292053.1| hypothetical protein CLONEX_04294 [Clostridium nexile DSM 1787]
 gi|210148832|gb|EEA79841.1| hypothetical protein CLONEX_04294 [Clostridium nexile DSM 1787]
          Length = 345

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 120/294 (40%), Gaps = 39/294 (13%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTE----EKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           RGLSK T+ SY+  T   LI   +  +    ++IT   +   + ++  +++   R   + 
Sbjct: 26  RGLSKNTINSYKT-TFTLLIKYMYSVKNTKADEITFDCLDVNTLSDFMSWLENERKCSVT 84

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--L 142
            R+ +  L+ + SF +Y +       S   +      S   P+   +++     D V  L
Sbjct: 85  TRNQR--LAALYSFSEYAQNYDFDAASTFRSAVLRIPSKKAPK---KRRVGFTTDEVKIL 139

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ--NIMDDQSTLRIQGKGDKIRIV 200
           L    +      R+  +L  +Y  G R  E   LT +  N     +T+ I GKG K R +
Sbjct: 140 LALPDQKSETGLRDMVLLSFMYATGTRAQEVCDLTVKSVNFRSTGTTIDIVGKGSKARRI 199

Query: 201 ----PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRYLG 255
               P    +RK I           +  I+    R I     +  +    + ++ ++Y+ 
Sbjct: 200 RIPDPCASMLRKYIR----------HRRIETEPDRHIFSSQTHEHMTISCVEEIYKKYIK 249

Query: 256 LPLSTTA----------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           L    T           H++RH+   H+L  G  +  I++ LGH  + TTQIYT
Sbjct: 250 LAKEKTPNLFKEEHYSPHSMRHTTGQHMLEAGVPIMVIKAFLGHASVQTTQIYT 303


>gi|133723146|gb|ABO37819.1| XerC [Lactococcus garvieae]
          Length = 353

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 118/291 (40%), Gaps = 38/291 (13%)

Query: 58  ITIQTIRQLSYTEIRAFI-----SKRRTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTE 110
           I + T+  L+ ++I  +I       R+  K G    S+KR+L+ + S  KYL ++     
Sbjct: 66  IDLDTLENLARSDIEGYILYLREKPRQNNKSGLTQNSVKRTLAALSSLFKYLTEQAEGIN 125

Query: 111 SNILNMRNLKKSNSL--------PRALNEKQALTLVDNV-----LLHTSHETKWID---- 153
                 RN+ K   +         RA N K  L L D        +   +E    +    
Sbjct: 126 GEPYFYRNVMKKVQIQKNRETLASRAENIKGKLFLGDETQGFLDFIDNEYEKSLSNRALS 185

Query: 154 ------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
                  R+ AI+ L+   G+R+SEA+++   ++      + +  KG K   V +     
Sbjct: 186 SFNKNKERDLAIIALMLASGVRLSEAVNINISDLNMKTLVVEVTRKGGKRDAVNIAKFAE 245

Query: 208 KAILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
             +L Y ++      P   N    L ++RG +   ++    ++ + +  +     +  T 
Sbjct: 246 LYLLNYLEIREQRYKPEKNNKAFFLSIYRG-QASRIDGSSIEKLVSKYSQ--AFKVRITP 302

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           H LRH+ AT L +       +   LGH     T +YT++ S+   + + E+
Sbjct: 303 HKLRHTLATRLYAQTNSQVLVSHQLGHSSTQVTDLYTHIISQEQKNALDEL 353


>gi|309795404|ref|ZP_07689822.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
 gi|308121054|gb|EFO58316.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
          Length = 369

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 28/187 (14%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--TKWID--ARNSAILYLLY----GCGLRISEALS 175
           S P  L   +  T+ +  +   +HE   + +D   R   IL L+       G R  EA++
Sbjct: 180 SYPNPLENMRKFTIAEKEMAWLTHEQIVELLDDCKRQDPILALVVKICLSTGARWREAIN 239

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           LT   +   + T  ++ KG K R +P+   + + I+    L  F+               
Sbjct: 240 LTRSQVTKYRITF-VRTKGKKNRSIPISKELYEEIMA---LDGFNF-------------- 281

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  FQ      +  + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T
Sbjct: 282 --FTDCYFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMT 339

Query: 296 QIYTNVN 302
             Y +++
Sbjct: 340 MRYAHLS 346


>gi|293420941|ref|ZP_06661375.1| hypothetical protein ECCG_04310 [Escherichia coli B088]
 gi|291324811|gb|EFE64227.1| hypothetical protein ECCG_04310 [Escherichia coli B088]
          Length = 115

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 44  VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 87


>gi|225352818|ref|ZP_03743841.1| hypothetical protein BIFPSEUDO_04450 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156425|gb|EEG69994.1| hypothetical protein BIFPSEUDO_04450 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 308

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 12/152 (7%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVR 207
           +A    ++ L+   GLR SEAL LTP +      TL +    D       +P     SVR
Sbjct: 135 EASWDWLILLIAKTGLRFSEALGLTPDDFDFAHQTLSVSKTWDYKNGGGFVPTKNESSVR 194

Query: 208 KAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           K  L++     L     NL    P+F  + GK  N        R  +  + +P+  + H 
Sbjct: 195 KVQLDWQLIMQLSGLLKNLPHDKPIF--VHGKVYNSTANDVLARHCKN-VDVPV-ISIHG 250

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           LRH+ A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 251 LRHTHASLLLFAGVSIASVSRRLGHASMTTTQ 282


>gi|225389817|ref|ZP_03759541.1| hypothetical protein CLOSTASPAR_03565 [Clostridium asparagiforme
           DSM 15981]
 gi|225044127|gb|EEG54373.1| hypothetical protein CLOSTASPAR_03565 [Clostridium asparagiforme
           DSM 15981]
          Length = 409

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 78/184 (42%), Gaps = 41/184 (22%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLR---------IQGKG----------DKIRI 199
           ++ +L G GLR+ E   LT  ++  + +T+          I G+              R 
Sbjct: 207 VMVVLLGTGLRVGECTGLTKNDVDLENNTISVNHNLIYRVIDGEAGFHITTPKTASGTRT 266

Query: 200 VPLL-PSVR---KAILEYYD-LCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLR-- 251
           +P+L P V    +A++E  D L P DL +N     LFR   G  L+     R I ++   
Sbjct: 267 IPILYPQVAEQLRALIEVMDALYPEDLVMNGYHGFLFRNRSGYFLSAHNINRAIERISIA 326

Query: 252 -------------RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QI 297
                        R   L    + H LRH+F T L     D++ IQ ++GH   STT  I
Sbjct: 327 YNAEEMDQAELEDREPNLLPHFSVHNLRHTFCTRLCEKTNDIKFIQQVMGHADFSTTMDI 386

Query: 298 YTNV 301
           YT++
Sbjct: 387 YTHI 390


>gi|212716989|ref|ZP_03325117.1| hypothetical protein BIFCAT_01935 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660274|gb|EEB20849.1| hypothetical protein BIFCAT_01935 [Bifidobacterium catenulatum DSM
           16992]
          Length = 324

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 12/152 (7%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVR 207
           +A    ++ L+   GLR SEAL LTP +      TL +    D       +P     SVR
Sbjct: 151 EASWDWLILLIAKTGLRFSEALGLTPDDFDFAHQTLSVSKTWDYKNGGGFVPTKNESSVR 210

Query: 208 KAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           K  L++     L     NL    P+F  + GK  N        R  +  + +P+  + H 
Sbjct: 211 KVQLDWQLIMQLSGLLKNLPHDKPIF--VHGKVYNSTANDVLARHCKN-VDVPV-ISIHG 266

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           LRH+ A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 267 LRHTHASLLLFAGVSIASVSRRLGHASMTTTQ 298


>gi|3152920|gb|AAC17173.1| unknown [Streptococcus mutans]
          Length = 356

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 119/300 (39%), Gaps = 60/300 (20%)

Query: 58  ITIQTIRQLSYTEIRAFI----------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI 107
           I ++T+  LS  ++ +FI          +K + Q +   ++ R+LS + S  KYL +   
Sbjct: 66  IPLETLEHLSKKDMESFILYLRERTLLNTKNKRQGVSQTTINRTLSALSSLYKYLTEEVE 125

Query: 108 TTESNILNMRNLKKSNSL--------PRALNEKQALTLVDNVL-----LHTSHETKWID- 153
             +      RN+ K  S          RA N KQ L L +  +     +   +E K    
Sbjct: 126 NADGEPYFYRNVMKKVSTKKKKETLAARAENIKQKLFLGNETMEFLEYVDCEYEQKLSKR 185

Query: 154 ---------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
                     R+ AI+ LL   G+R+SEA++L  +++  +   + +  KG K   V +  
Sbjct: 186 ALSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVTRKGGKHDSVNV-A 244

Query: 205 SVRKAILEYY-------------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
              K  LE Y             DL  F       L  +RG+  + ++    ++ + +  
Sbjct: 245 GFAKPYLENYITIRRGRYKAKKTDLAFF-------LSEYRGVPNR-MDASSIEKMVAKYS 296

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGD 308
           +     +  T H LRH+ AT L         +   LGH     T +YT++     KN  D
Sbjct: 297 Q--DFKIRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|331681295|ref|ZP_08381932.1| type 1 fimbriae regulatory protein FimE [Escherichia coli H299]
 gi|331081516|gb|EGI52677.1| type 1 fimbriae regulatory protein FimE [Escherichia coli H299]
          Length = 198

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 66/158 (41%), Gaps = 2/158 (1%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILE 212
           AR+  ++ L Y  G+RISE L L  Q++  ++  + I+   +    V PL    R+A+  
Sbjct: 26  ARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVER 85

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +          +    +F   RG  L+     R IR      G    T  H LRH+    
Sbjct: 86  WTQERANWKGADRTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYE 145

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-GGDW 309
           L   G D R IQ  LGH  +  T  YT  N+    G W
Sbjct: 146 LAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLW 183


>gi|302387142|ref|YP_003822964.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302197770|gb|ADL05341.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 327

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 62/152 (40%), Gaps = 18/152 (11%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           LLY CGLR SEA  L  +N+  D   L I G K DK R+VP+ P +      Y ++    
Sbjct: 149 LLYFCGLRFSEAQQLLVKNVDLDNGILSIYGSKFDKDRLVPMSPEITNICRAYSEVVHVH 208

Query: 221 LNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-----HTLRHSFATHLL 274
            + + I LP    +         F    R L    G+           H LRH+FA H L
Sbjct: 209 SSADAIYLP---NVHNDVYEKRCFYNVYRDLLWMAGISHGGRGNGPRLHDLRHTFAVHCL 265

Query: 275 ----SNGGDLRS----IQSILGHFRLSTTQIY 298
                   D+ +    + S LGH  L  T  Y
Sbjct: 266 RKWVEEDADITALLPYLSSYLGHKGLQETAYY 297


>gi|60680662|ref|YP_210806.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
 gi|60492096|emb|CAH06859.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
          Length = 371

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 70/148 (47%), Gaps = 18/148 (12%)

Query: 163 LYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           L+ C   LRIS+ LSL  ++I+D  +       G K   V ++    KA     D+ P  
Sbjct: 223 LFSCMTSLRISDILSLCWEDIVDYSA-------GGKC--VHIITQKNKA----EDIIPIS 269

Query: 221 ---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
              L L       +G+  K L     Q  +++  R  G+  + T H+ R +FAT   + G
Sbjct: 270 EEALGLIGYSSEKKGLVFKGLMRSWTQIPMKEWIRSAGITKNITFHSYRRTFATLQAAAG 329

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            D+R+IQSI+ H  ++TTQ Y  V   N
Sbjct: 330 TDIRTIQSIMAHKSITTTQRYIKVVDAN 357


>gi|301309519|ref|ZP_07215461.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300832608|gb|EFK63236.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 210

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 14/131 (10%)

Query: 173 ALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-P 228
            LSL  ++ + D  T+ I   QGKG K + V    + +    EY     F +N  I    
Sbjct: 61  VLSLIDESSVIDGKTMDIHSVQGKGVKCQGVSF--NFKIGCGEYD---TFYVNNTIDFNA 115

Query: 229 LFRGI----RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
           +F G+       P  P  ++ Y   L   L +P     H LRHSFAT  +  G D +++ 
Sbjct: 116 MFDGVLIGNDEHPTEPCTYRNYYNSLMAKLDIP-KLKYHGLRHSFATRCIEAGCDYKTVS 174

Query: 285 SILGHFRLSTT 295
            +LGH  +STT
Sbjct: 175 VLLGHSNISTT 185


>gi|260593520|ref|ZP_05858978.1| putative integrase [Prevotella veroralis F0319]
 gi|260534508|gb|EEX17125.1| putative integrase [Prevotella veroralis F0319]
          Length = 385

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 81/187 (43%), Gaps = 34/187 (18%)

Query: 131 EKQALTLVD--NVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQS 186
           E+ +LT+ D   +L +  H +      N   L  L GC  GL  S+   L     MDD  
Sbjct: 165 ERNSLTVDDLQKLLAYRPHRS----TDNHCRLIFLLGCFTGLAFSDLKKLR----MDDVY 216

Query: 187 TLR--------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           T           + K     IVPLLP   + +    D     L       LFR     P 
Sbjct: 217 TFGDGRRYISLCRTKTQNRSIVPLLPIAEEILTIVSDGRKEGL-------LFREF---PT 266

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTA--HTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTT 295
           N   F R IR +    GLP  T A  HT RH+FAT + L NG  + ++  +LGH  +STT
Sbjct: 267 N-SHFNRKIRDIIIKAGLPPHTEANSHTARHTFATTICLENGLPIETVSKMLGHRFISTT 325

Query: 296 QIYTNVN 302
           ++Y  V+
Sbjct: 326 ELYAKVS 332


>gi|170576371|ref|XP_001893602.1| resolvase [Brugia malayi]
 gi|37496517|emb|CAD50592.1| resolvase [Cloning vector pUvBBAC]
 gi|158600296|gb|EDP37566.1| resolvase [Brugia malayi]
 gi|222834586|gb|EEE73049.1| predicted protein [Populus trichocarpa]
 gi|296775705|gb|ADH42981.1| Integrase [uncultured SAR11 cluster alpha proteobacterium
           H17925_38M03]
 gi|312843168|gb|ADR02804.1| ResD [Shuttle vector pMycoFos]
          Length = 115

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 44  VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 87


>gi|315180749|gb|ADT87663.1| Integrase [Vibrio furnissii NCTC 11218]
          Length = 352

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 21/143 (14%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           ++ L    G R  E  SLT   +   + T   Q KG K R VP+ P + + I +      
Sbjct: 202 VIKLCLATGGRFRETASLTGSQLSQYKVTF-TQTKGKKNRSVPISPELYEEIYKPGSGPL 260

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
           F +  +    ++R I           R I +L++         AH LRH+FA++ + NGG
Sbjct: 261 FGIGYST---VYRFI----------SRNIPRLKQ-------QAAHVLRHTFASYYMMNGG 300

Query: 279 DLRSIQSILGHFRLSTTQIYTNV 301
           ++ ++Q ILGH  +  T  Y ++
Sbjct: 301 NIIALQRILGHADIKQTMRYAHL 323


>gi|221215737|ref|ZP_03588698.1| phage integrase family protein [Burkholderia multivorans CGD1]
 gi|221164439|gb|EED96924.1| phage integrase family protein [Burkholderia multivorans CGD1]
          Length = 575

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 128/320 (40%), Gaps = 70/320 (21%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +ERG  LS LT +    D   +  FL   T  +  I  +R     + R F     +  + 
Sbjct: 258 VERGRALSSLTTE----DALAYRAFLRRPTPHERWIGPVRPRGAPDWRPF-----SGALS 308

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSLPRALNEKQALTLVDNVL 142
            RS   +LS + +  ++L +++    +    + +R+ + ++    AL+   A T  + +L
Sbjct: 309 ARSAAYALSVLGAMFRWLIEQRYVLANPFAGVKVRDTRGAS----ALDTSHAFTEGEWLL 364

Query: 143 LHT---SHETKWIDA-----------RNSAILYLLYGCGLRISEALSLTPQNIMDD---Q 185
           + T     E +  D            R   IL   Y  GLR SE +  T  +I  D    
Sbjct: 365 VRTIADGLEFRKTDVPAAAWTPAAAQRLRFILDFGYATGLRASELVGATLGDIDTDAHGD 424

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP----- 240
           + L++ GKG K   V L P  R A+  Y         +  +LP+   +R +P  P     
Sbjct: 425 AWLKVVGKGSKAARVALPPLARTALDRYL--------VARRLPVT-PVRWRPDTPLIPRL 475

Query: 241 --------------GVFQRYIRQLRRYLGL--PL------STTAHTLRHSFATHLLSNGG 278
                          V QR+  Q    +    P         + H +RH+ ATH L+ G 
Sbjct: 476 TEDGAAPITSVRLWKVMQRFFVQTADLVEADNPALAQKLRQASPHWMRHTHATHALARGA 535

Query: 279 DLRSIQSILGHFRLSTTQIY 298
           +L +++  L H  +STT IY
Sbjct: 536 ELTTVRDNLRHASISTTSIY 555


>gi|50953961|ref|YP_061249.1| phage-related integrase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50954189|ref|YP_061477.1| phage-related integrase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50950443|gb|AAT88144.1| phage-related integrase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50950671|gb|AAT88372.1| phage-related integrase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 434

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 59/142 (41%), Gaps = 28/142 (19%)

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLC-----PFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           I+ K  K R VPL+P V   + EY +       P+ L       L+R   G+P  P   Q
Sbjct: 284 IRPKLGKSRTVPLIPPVVAVLHEYLEATKDRPNPYGL-------LWRHEDGRPYLPHEDQ 336

Query: 245 RYIRQL----------------RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +  R L                 R  G P   T H  RH+ AT L+  G D + +  I+G
Sbjct: 337 QLWRDLLFRAGVINQEQTKPPKDRTPGTPGIPTTHWARHTTATALMELGVDAKIVGEIVG 396

Query: 289 HFRLSTTQIYTNVNSKNGGDWM 310
           H    TT+ Y +V+S    D M
Sbjct: 397 HVDEKTTRRYQHVSSPTARDAM 418


>gi|332885867|gb|EGK06113.1| hypothetical protein HMPREF9456_02377 [Dysgonomonas mossii DSM
           22836]
          Length = 406

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 20/141 (14%)

Query: 167 GLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPFDLN 222
           GL   +  +L PQNI    +  L I+    K ++   +PL P + + IL  Y+       
Sbjct: 251 GLAFVDVHNLYPQNIGKTAEGKLYIRSSRAKTKVEAFIPLHP-IAEQILMLYN------T 303

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRY--IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
           ++   P+F      PL P   Q +  + ++   LG+  + + H  RHSF T +LS G  +
Sbjct: 304 IDNTAPIF------PL-PSRDQIWFEVHEIGFALGIKENLSYHMSRHSFGTLMLSAGIPI 356

Query: 281 RSIQSILGHFRLSTTQIYTNV 301
            SI  ++GH  +S+TQIY+ V
Sbjct: 357 ESISKMMGHTNISSTQIYSKV 377


>gi|265763422|ref|ZP_06091990.1| integrase [Bacteroides sp. 2_1_16]
 gi|263256030|gb|EEZ27376.1| integrase [Bacteroides sp. 2_1_16]
          Length = 372

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 14/146 (9%)

Query: 163 LYGC--GLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           L+ C   LRIS+ L+L  + I+D  +  + +     K +   ++P   +A          
Sbjct: 224 LFSCLTSLRISDILTLRWEEIVDFAAGGKCVHTVTQKTKTEDIIPISDEA---------- 273

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
            L L    P   G+  K L     Q  +++  R  G+  + T H+ R +FAT   + G D
Sbjct: 274 -LQLIGYSPEKTGLVFKGLKRCWTQYPMKEWIRAAGITKNITFHSYRRTFATLQAAAGTD 332

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKN 305
           +R+IQSI+ H  ++TTQ Y  V   N
Sbjct: 333 IRTIQSIMAHKSITTTQRYMKVVDSN 358


>gi|253578301|ref|ZP_04855573.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850619|gb|EES78577.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 399

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 92/219 (42%), Gaps = 46/219 (21%)

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           A+  KQ   L+   +    H +++ DA     +Y+L+  GLRISE   LT   I   +  
Sbjct: 191 AITRKQQRDLL-KFIQEDKHFSRYYDA-----IYILFHTGLRISEFCGLTVSEIEFGEMR 244

Query: 188 LRI---------------QGKGDK-IRIVPLL----------------PSVRKAILEYYD 215
           +++               + K DK IR VP+                 P V   +  Y  
Sbjct: 245 IKVDHQLQRTAQMQYVIEEPKTDKGIRYVPMTEAVAACFRRIIANRKTPKVEPMVEGYAG 304

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
               D N    +P+   +  +     + Q+Y R  R  + +P   T H  RH+F +++  
Sbjct: 305 FLFLDKN---DMPMV-ALHWEKYLEHIIQKYNRIYR--IQMP-KVTPHVCRHTFCSNMAK 357

Query: 276 NGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           +G + +++Q I+GH  +S T   YT+VN  +  + +  I
Sbjct: 358 SGMNPKTLQYIMGHADISVTLNTYTHVNFDDAKEEVYRI 396


>gi|229547242|ref|ZP_04435967.1| bacteriophage integrase [Enterococcus faecalis TX1322]
 gi|256854683|ref|ZP_05560047.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|229307639|gb|EEN73626.1| bacteriophage integrase [Enterococcus faecalis TX1322]
 gi|256710243|gb|EEU25287.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|315030632|gb|EFT42564.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4000]
          Length = 309

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 13/147 (8%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212
            + L+   GLR SEAL+LTP++    +  + I+   +         S       RK  ++
Sbjct: 141 FILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGFFQSTKNESSKRKVQID 200

Query: 213 YYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +     F     N+    P+F  ++G+  N  +  R ++ L +   +P+  T H+LRH+ 
Sbjct: 201 WQTAMQFSQLIRNMPPMEPIF--VKGRVFNSTINNR-LKVLCKRAQIPV-ITVHSLRHTH 256

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           A+ LL  G  + S+ + LGH  ++TTQ
Sbjct: 257 ASLLLFAGVSIASVATRLGHSSMTTTQ 283


>gi|171057458|ref|YP_001789807.1| integrase family protein [Leptothrix cholodnii SP-6]
 gi|170774903|gb|ACB33042.1| integrase family protein [Leptothrix cholodnii SP-6]
          Length = 326

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 102/237 (43%), Gaps = 32/237 (13%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           +  R L  +++F+++L++ +  TE     +         P   +E++   ++D  LL ++
Sbjct: 70  TWARRLKRLRTFVRWLQQFEPDTEVPDDTVFGRMPERKAPHIYSEQE---IID--LLTSA 124

Query: 147 HETKWIDARNSAILYLLYG----CGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVP 201
                  +    +   L+G     GLRISEALSL   ++      L IQ  K  K R VP
Sbjct: 125 RRLGPASSLRGVVFETLFGLIASTGLRISEALSLKNADVDLKTGMLSIQLTKFGKSRQVP 184

Query: 202 LLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYL 254
           + PS  +A+ +Y    DL     +       F G RG+    PL      R   +LRR L
Sbjct: 185 VHPSTLEALRQYRLRRDLA--GESYGDDTAFFVGSRGRLHGRPLGDRQVHRVFGELRRQL 242

Query: 255 GLP-----LSTTAHTLRHSFATHLL----SNGGDLR----SIQSILGHFRLSTTQIY 298
           G P      +   H LRH+F    +    + G D+     S+ + +GH  ++ T  Y
Sbjct: 243 GWPNRGSHHAARIHDLRHTFVVRRIVQWYAQGVDIDQAMLSLSTYIGHAMVTNTYWY 299


>gi|170024532|ref|YP_001721037.1| integrase family protein [Yersinia pseudotuberculosis YPIII]
 gi|169751066|gb|ACA68584.1| integrase family protein [Yersinia pseudotuberculosis YPIII]
          Length = 335

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 23/143 (16%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           ++ +    G R SEA  L+   +M  + T   Q K  + R VP+   +       YD   
Sbjct: 194 VVRICLATGARWSEAQGLSQSQLMPSRVTF-TQTKSKRNRTVPISKRL-------YD--- 242

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR-YLGLPLSTTAHTLRHSFATHLLSNG 277
                  +LP  RG     +    +  +   L+R  + LP     H LRH+FA+H +  G
Sbjct: 243 -------RLPKRRG----SMFSSCYDAFKHALKRSAIELPKGQRTHVLRHTFASHFMMGG 291

Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300
           G++  +Q ILGH  +  T  Y +
Sbjct: 292 GNILVLQQILGHSTILMTMRYAH 314


>gi|296455012|ref|YP_003662156.1| phage integrase family protein [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296184444|gb|ADH01326.1| phage integrase family protein [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 351

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 118/301 (39%), Gaps = 31/301 (10%)

Query: 19  QNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++WL + L   RG S  T+++Y      ++ +L      + +           +  ++  
Sbjct: 21  RDWLHHWLPKVRGSSPKTVEAYRIGLESYVRWLETTEGTQRSHIGFGHFDRARLGRWVEW 80

Query: 78  RRTQK-IGDRSLKRSLSGIKSFLKY--LKKRKITTESNILNMRNLKKSNSLP-RALNEKQ 133
            RT++   DR++   ++ ++ FL +  L+   +T   N      +K     P   L E+ 
Sbjct: 81  MRTERGYSDRTIMPRMTTMRVFLDHAGLEHPALTALGNDAAGIRVKPPAREPVDHLGEEH 140

Query: 134 ALTLVDNVLLHTSHETKWI--DA---RNSAILYLLYGCGLRISEALSLTPQNI-MDDQST 187
              L+          T W   DA   RN  +  L+Y    RI E  +LT  ++ MD  + 
Sbjct: 141 TKALL----------TAWGTGDAKSRRNRMLPILMYDTAARIGELAALTIADVGMDKPAR 190

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQR- 245
           + + GK  K R+VPL    R  +  Y +   P     +   PLF   R   + P    R 
Sbjct: 191 VTLTGKRGKSRVVPLGERTRTHLAAYLEEFHPGPSTRDGDRPLFHSTRNGAIQPLSVDRI 250

Query: 246 ------YIRQLRRYL--GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
                    + RR     +P     H +R + A  L   G  L  I  +LGH  +STT  
Sbjct: 251 DEIPKTAAARARRGTCPSMPERVHCHLIRRTRAMDLYQQGVPLPLIMQLLGHESMSTTSA 310

Query: 298 Y 298
           +
Sbjct: 311 F 311


>gi|237719819|ref|ZP_04550300.1| integrase [Bacteroides sp. 2_2_4]
 gi|229451088|gb|EEO56879.1| integrase [Bacteroides sp. 2_2_4]
 gi|295086377|emb|CBK67900.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 389

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 5/75 (6%)

Query: 232 GIRGKPLNPGV----FQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSI 286
           G + +PL P V      RY++++ +  G+    T H  RH+FAT + L +   L ++  +
Sbjct: 284 GKKNQPLFPYVSNQIMNRYLKKVAKLAGVEDRVTYHVARHTFATTITLQHEIPLETVSKM 343

Query: 287 LGHFRLSTTQIYTNV 301
           LGH +++TTQ+Y  V
Sbjct: 344 LGHTKITTTQVYARV 358


>gi|237724706|ref|ZP_04555187.1| integrase [Bacteroides sp. D4]
 gi|229436901|gb|EEO46978.1| integrase [Bacteroides dorei 5_1_36/D4]
          Length = 371

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 20/149 (13%)

Query: 163 LYGC--GLRISEALSLTPQNIMD----DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           L+ C   LR+S+ L+L  + I+D     +    I  K     I+P+     K ++EY   
Sbjct: 223 LFSCLTSLRLSDILTLCWEEIVDFAAGGKCVHTITQKTKTEDIIPISDEALK-LIEY--- 278

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
                      P  +G+  K L     Q  +++  R  G+  + T H+ R +FAT   + 
Sbjct: 279 ----------SPEKKGLVFKGLKRCWTQVPMKEWIRSAGITKNITFHSYRRTFATLQGAA 328

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           G D+R+IQS++ H  ++TTQ Y  V   N
Sbjct: 329 GTDIRTIQSMMAHKSITTTQRYMKVVDSN 357


>gi|150006223|ref|YP_001300967.1| transposase [Bacteroides vulgatus ATCC 8482]
 gi|149934647|gb|ABR41345.1| transposase [Bacteroides vulgatus ATCC 8482]
          Length = 412

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 84/192 (43%), Gaps = 24/192 (12%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           KK N  P+AL  +  L + D   L      K +       L+  Y  G   ++ +S+T +
Sbjct: 218 KKENP-PKALTREDFLKIRD---LEIPERRKSLALTRDLFLFACY-TGTAYADTVSITEE 272

Query: 180 NIMDDQST---LRIQGKGDKIRI-VPLLPSVRKAILEYYDLCPFDLNLNIQLPL--FRGI 233
           N+  D+     L+   K +K+   V LLP    A+LE Y     D      LP   FR +
Sbjct: 273 NLFRDEEGSLWLKYHRKKNKMLARVKLLPEAL-AMLEKYK----DPTRPTLLPPQEFRVL 327

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRL 292
           RG         + +R L    G+ +    H  RHSFA+ + L  G  + +I  +LGH  +
Sbjct: 328 RGN-------MKSLRVLSGISGISMDLVYHVGRHSFASLVTLEEGVPIETISRMLGHSNI 380

Query: 293 STTQIYTNVNSK 304
            TTQIY  V  K
Sbjct: 381 QTTQIYARVTPK 392


>gi|29347677|ref|NP_811180.1| integrase protein [Bacteroides thetaiotaomicron VPI-5482]
 gi|29339578|gb|AAO77374.1| integrase protein [Bacteroides thetaiotaomicron VPI-5482]
          Length = 396

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 70/164 (42%), Gaps = 48/164 (29%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           A L+  Y  GLR S+ ++LT  NI++  Q T  I              SV+  I      
Sbjct: 238 AFLFCCYA-GLRYSDFINLTAANIVELHQETWLI------------YKSVKTGI------ 278

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-------------- 262
                  +++LPL+    GK L   V + Y   L  +  L  ++                
Sbjct: 279 -------DVRLPLYLLFEGKGLR--VLETYKDDLNGFFKLKDNSNVNKDLNALAKLAEID 329

Query: 263 -----HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                HT RH+ AT L+ +G ++ ++Q +LGH  + TTQ+Y N+
Sbjct: 330 KRISFHTARHTNATLLIYSGANITTVQKLLGHKSVKTTQVYANI 373


>gi|299142622|ref|ZP_07035752.1| integrase [Prevotella oris C735]
 gi|298575837|gb|EFI47713.1| integrase [Prevotella oris C735]
          Length = 349

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 82/185 (44%), Gaps = 31/185 (16%)

Query: 148 ETKWIDARNSAILYLLYGC---GLRISEALSLTPQNIM---DDQSTLRIQ-GKGDKIRIV 200
           +T+ ID +   +  L   C   GL   +   L P++I+   D    +RI+  K D   I+
Sbjct: 162 QTRIIDKQFERVRQLFLFCAFTGLARVDMQRLKPKHIIRNADGTEEIRIKRQKTDVEAII 221

Query: 201 PLLPSVRKAILEYY------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           PLLP + K IL  Y      D   F  +L I+   F  +     N G   R  + L    
Sbjct: 222 PLLP-IAKQILSLYIKDKEADELIFP-SLTIRKASFACV-----NIGQICRIEKGL---- 270

Query: 255 GLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                 T H  RH+F+T + LSNG  + ++  ILGH  + TTQIY  +      + M  +
Sbjct: 271 ------TFHMARHTFSTTICLSNGISMETLSKILGHSNIGTTQIYGKITDHKIQEDMTAL 324

Query: 314 YDQTH 318
            D+ H
Sbjct: 325 TDREH 329


>gi|282879691|ref|ZP_06288421.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281306360|gb|EFA98390.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
          Length = 409

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYT 299
             +Q Y++ LR   G+P   T HT RH+FAT + L  G  + ++  +LGH  +S T+ Y 
Sbjct: 325 ATYQSYLKALRLRAGIPFPFTTHTARHTFATLITLEQGVPIETVSKMLGHSYVSMTERYA 384

Query: 300 NVN 302
            V 
Sbjct: 385 KVT 387


>gi|167762059|ref|ZP_02434186.1| hypothetical protein BACSTE_00409 [Bacteroides stercoris ATCC
           43183]
 gi|167700018|gb|EDS16597.1| hypothetical protein BACSTE_00409 [Bacteroides stercoris ATCC
           43183]
          Length = 409

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 9/111 (8%)

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +V L+P V + I +Y  +  F ++ +   P+           G  +  ++++    G  +
Sbjct: 291 VVKLIPIVVELIEKYRGVNEFKVSPDRVFPVG--------EIGSMEDSLKRIGEKAGCSV 342

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN-VNSKNGGD 308
             + H  RH+FAT  LS G  L ++Q +LGH  + +TQ+Y   +N K G D
Sbjct: 343 RVSPHVGRHTFATLALSKGMPLETLQKVLGHKTIISTQVYAELINPKIGED 393


>gi|154496301|ref|ZP_02034997.1| hypothetical protein BACCAP_00589 [Bacteroides capillosus ATCC
           29799]
 gi|150274384|gb|EDN01461.1| hypothetical protein BACCAP_00589 [Bacteroides capillosus ATCC
           29799]
          Length = 301

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 85/208 (40%), Gaps = 28/208 (13%)

Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
           N L  +N  +   +P+   + +     D + L   +   +   R S  +  L   GLR S
Sbjct: 84  NELCAKNPMRHVKIPKVQEQCRESFTFDELKLILRYALGYTPLRVSVAVITLLLTGLRRS 143

Query: 172 EALSLTPQNIMDDQSTL-----------RIQGKGDK----IRIVPLLPSVRKAILEYYDL 216
           E L L   ++  D  T+           +++    K    +R +PLLP +   +      
Sbjct: 144 ELLGLKWSDLTADTLTVNRSVYLESGKPKVEEHRAKTISSLRTIPLLPELSYKLHTLPKR 203

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQR----YIRQLRRYLGLPLSTTAHTLRHSFATH 272
             F         +F    G   +P  F R    + R LR         + H  RH+FAT 
Sbjct: 204 SEF---------IFCSRNGTLWHPRNFSRDYTTFFRHLREAEPDARRLSPHCCRHTFATL 254

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            L++G D+R++Q++LGH  + TT  YT+
Sbjct: 255 SLASGADIRTVQALLGHANIKTTSRYTH 282


>gi|126665397|ref|ZP_01736379.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126669107|ref|ZP_01740037.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126626434|gb|EAZ97101.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126630025|gb|EBA00641.1| integrase/recombinase [Marinobacter sp. ELB17]
          Length = 312

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 15/161 (9%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLC 217
           ++ LLYG  LR+ EAL LT  ++  DQ+ L IQ  K  K R+VPL   +   + +Y    
Sbjct: 133 LILLLYGACLRLGEALRLTMNDVDLDQAILCIQKTKFYKTRLVPLGQDLNLVLKQYALRR 192

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA------HTLRHSFAT 271
                     P F    G  L+    +   R+LR   G+  + +A      H LRH+ A 
Sbjct: 193 NATHCKEATAPFFCFRDGHTLSQSAVRSAFRRLRSQAGVQRNDSARYQPRLHDLRHTGAV 252

Query: 272 HLL----SNGGDLR----SIQSILGHFRLSTTQIYTNVNSK 304
           H L     +G DL+     + + LGH  LS TQ Y  +  +
Sbjct: 253 HRLVFWYRSGADLQRLLPQLATYLGHIDLSATQRYLTMTPE 293


>gi|58337430|ref|YP_194015.1| site-specific tyrosine recombinase XerS [Lactobacillus acidophilus
           NCFM]
 gi|58254747|gb|AAV42984.1| phage integrase-recombinase [Lactobacillus acidophilus NCFM]
          Length = 342

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 6/163 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI+ L+ G G+R+SE   +  Q++   ++ L +  KG +   VP+       I +Y 
Sbjct: 173 RDMAIIALILGTGIRVSECAGVDLQDLNLKEAVLDVTRKGGQKDSVPIAEWTLSYIKQYK 232

Query: 215 DLCPFDLNLNIQLPLFRGIR----GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           D+       + +   F   R     + +     ++ + +     G PL  T H LRH+ A
Sbjct: 233 DIRTDRYMADQKQTAFFLTRWHNQTRRITANAIEKMVNKYSASFGHPL--TPHKLRHTLA 290

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           + L     D   +   LG    + T +YT+V+ +   D + +I
Sbjct: 291 SELYEVTKDQVLVAQQLGQKGTTATDLYTHVDQRKQRDALNQI 333


>gi|86141544|ref|ZP_01060090.1| mobilizable transposon, int protein [Leeuwenhoekiella blandensis
           MED217]
 gi|85832103|gb|EAQ50558.1| mobilizable transposon, int protein [Leeuwenhoekiella blandensis
           MED217]
          Length = 398

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 24/148 (16%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
            L+ C  GLR S+   LT   + D++   R+           +    + A  EY  L   
Sbjct: 250 FLFSCLTGLRWSDVNKLTWSEVRDEEEGSRL-----------VFKQKKTAAQEYQYLSDQ 298

Query: 220 DLNL-----NIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
             ++          +F+G++ G   N  + +  +R      G+    T H+ RH+ A  L
Sbjct: 299 ARSILGDRKQENARVFQGLKYGAHFNAEILRWCMR-----AGITKHITFHSARHTHAVLL 353

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           L +G D+ ++  ILGH  + TTQIY  +
Sbjct: 354 LEHGADIYTVSKILGHKEIRTTQIYAKI 381


>gi|301022944|ref|ZP_07186759.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 69-1]
 gi|300397285|gb|EFJ80823.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 69-1]
          Length = 331

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 28/45 (62%)

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           LP     H LRH+FATH + NGG++ ++Q ILGH  +  T  Y +
Sbjct: 264 LPDGQAVHVLRHTFATHFIMNGGNIITLQRILGHSNIQQTMTYAH 308


>gi|300727862|ref|ZP_07061241.1| integrase/recombinase, phage integrase family [Prevotella bryantii
           B14]
 gi|299774846|gb|EFI71459.1| integrase/recombinase, phage integrase family [Prevotella bryantii
           B14]
          Length = 216

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 90/215 (41%), Gaps = 22/215 (10%)

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + SF  +L++     +S +  +  +K   ++     ++    + D    H S      + 
Sbjct: 10  LSSFFSWLEEENYIVKSPVRRIHKVKVGKTVKETYTDEALEQMRD----HCS------NI 59

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A++ LL   G+R+ E + L   +I        + GKGDK R V    +  K  L+ Y
Sbjct: 60  RDLALIDLLASTGMRVGELVRLNKNDIDYQNRECIVTGKGDKQRKV-YFDARTKIHLQKY 118

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLN----PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
                D N  + + L       P N     GV  R +R+L R L +P     H  R + A
Sbjct: 119 VNSRTDTNDALFVSLL-----SPNNRLEISGVEIR-LRRLGRELNIP-KVHPHKFRRTLA 171

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           T  +  G  +  +Q +LGH  L TT  Y  VN  N
Sbjct: 172 TMAIDKGMPIEQVQHLLGHQSLDTTLQYAMVNQNN 206


>gi|255690324|ref|ZP_05413999.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
 gi|260624124|gb|EEX46995.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
          Length = 130

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 4/66 (6%)

Query: 247 IRQLRRYLGLPLSTT----AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           I  LR  L +P  T      +T RH+FAT +L+ G DL ++  +LGH  +  TQ+Y  + 
Sbjct: 55  INVLRFILAIPFFTAFLNITYTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIV 114

Query: 303 SKNGGD 308
           +K   D
Sbjct: 115 NKKKDD 120


>gi|218884315|ref|YP_002428697.1| phage integrase family protein [Desulfurococcus kamchatkensis
           1221n]
 gi|218765931|gb|ACL11330.1| phage integrase family protein [Desulfurococcus kamchatkensis
           1221n]
          Length = 321

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 117/287 (40%), Gaps = 49/287 (17%)

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLP-R 127
           +  F +        + ++K  LS IK FL ++  + +   T  +IL  RN +  N  P R
Sbjct: 10  VEEFKASLEASGASEETVKAYLSAIKDFLGFIGDKPLRDVTLRDILAWRNDRLRNGFPNR 69

Query: 128 ALNEKQ------------------------ALTLVD------NVLLHTSHETKWIDAR-- 155
            +++K+                         +T V       NVL     E  +  AR  
Sbjct: 70  KISDKEKWLVTLHYYTLFLKRFFEWLGVNIVVTPVRKPHASINVLSDEEVEKLYNVARTP 129

Query: 156 -NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213
            +  +L LL   GLR  E L L  +++      +++   K  K R V        A  E 
Sbjct: 130 LDKLVLRLLVDTGLRSRELLGLRVEDVNFHSRVIKVTSAKYGKERYVV-------ATEET 182

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           + +    + LN  +P   G R   L   G++++  R   R    P     H LRH+FAT 
Sbjct: 183 FKMLDAWIRLNGLMP---GDRLFNLTYSGLYKKLKRLATRAGIAPERVRPHVLRHTFATR 239

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            L  G  L ++Q +LGH  + TTQIY +++ ++      E  D+ HP
Sbjct: 240 ALRRGLSLPALQRLLGHSDIKTTQIYLHLSVEDLKKEYYEKMDK-HP 285


>gi|161522759|ref|YP_001585688.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|160346312|gb|ABX19396.1| integrase family protein [Burkholderia multivorans ATCC 17616]
          Length = 274

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 16/85 (18%)

Query: 233 IRGKPLNP--------GVFQRYIRQLRRYLGLPLS------TTAHTLRHSFATHLLSNGG 278
           + G+ L+P        G+F R   QL   L  P +      T+ H LRH+FA H L  G 
Sbjct: 57  VTGEALHPDAVRRLFKGIFARAADQL--ALTYPNAAADLRRTSTHWLRHTFANHGLDAGA 114

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNS 303
           D+R +Q +L H  L TT +YT  ++
Sbjct: 115 DIRDMQELLDHASLGTTTLYTKADA 139


>gi|253569681|ref|ZP_04847090.1| transposase [Bacteroides sp. 1_1_6]
 gi|251840062|gb|EES68144.1| transposase [Bacteroides sp. 1_1_6]
          Length = 308

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 26/164 (15%)

Query: 160 LYLLYGCGLRISE--ALSLTPQNIMDDQSTLR--------IQGKGDKIRIVPLLPSVRKA 209
           +Y+    GLRI E  AL  +  N+ D   T+         I+G+     +V   P  + +
Sbjct: 133 IYISLSTGLRIGEICALKWSDINVYDGILTVNRTIERIYIIEGERKHTELVINTPKTKNS 192

Query: 210 ILEYYDLCPFDLNLNIQL-PLFRGIRG---------KPLNPGVFQRYIRQLRRYLGLPLS 259
             E     P +  L   L PL + I           +P  P  ++ Y ++L   L +P  
Sbjct: 193 CRE----IPINKELLTMLKPLKKVINDDYYILTNDERPTEPRTYRNYYKRLMEKLDIP-K 247

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN 302
              H LRHSFAT  +  G D +++  +LGH  +STT  +Y + N
Sbjct: 248 LKYHGLRHSFATRCIEVGCDYKTVSVLLGHSNISTTLDLYVHPN 291


>gi|157155436|ref|YP_001462104.1| phage integrase family site specific recombinase [Escherichia coli
           E24377A]
 gi|157077466|gb|ABV17174.1| site-specific recombinase, phage integrase family [Escherichia coli
           E24377A]
 gi|324113805|gb|EGC07780.1| phage integrase [Escherichia fergusonii B253]
          Length = 331

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 28/45 (62%)

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           LP     H LRH+FATH + NGG++ ++Q ILGH  +  T  Y +
Sbjct: 264 LPDGQAVHVLRHTFATHFIMNGGNIITLQRILGHSNIQQTMTYAH 308


>gi|117623084|ref|YP_851997.1| integrase [Escherichia coli APEC O1]
 gi|115512208|gb|ABJ00283.1| Integrase [Escherichia coli APEC O1]
          Length = 331

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 28/45 (62%)

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           LP     H LRH+FATH + NGG++ ++Q ILGH  +  T  Y +
Sbjct: 264 LPDGQAVHVLRHTFATHFIMNGGNIITLQRILGHSNIQQTMTYAH 308


>gi|170769173|ref|ZP_02903626.1| site-specific recombinase, phage integrase family [Escherichia
           albertii TW07627]
 gi|191167584|ref|ZP_03029395.1| site-specific recombinase, phage integrase family [Escherichia coli
           B7A]
 gi|300926544|ref|ZP_07142332.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|170121825|gb|EDS90756.1| site-specific recombinase, phage integrase family [Escherichia
           albertii TW07627]
 gi|190902345|gb|EDV62083.1| site-specific recombinase, phage integrase family [Escherichia coli
           B7A]
 gi|294492327|gb|ADE91083.1| site-specific recombinase, phage integrase family [Escherichia coli
           IHE3034]
 gi|300417435|gb|EFK00746.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|315296162|gb|EFU55470.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 16-3]
 gi|324116116|gb|EGC10040.1| phage integrase [Escherichia coli E1167]
          Length = 331

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 28/45 (62%)

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           LP     H LRH+FATH + NGG++ ++Q ILGH  +  T  Y +
Sbjct: 264 LPDGQAVHVLRHTFATHFIMNGGNIITLQRILGHSNIQQTMTYAH 308


>gi|187922278|ref|YP_001893920.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187713472|gb|ACD14696.1| integrase family protein [Burkholderia phytofirmans PsJN]
          Length = 405

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 77/181 (42%), Gaps = 40/181 (22%)

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           + LPR  N    +TLV  V L T    +W +A            GLRIS+  +   Q + 
Sbjct: 175 DELPRGRNVH--VTLVSMVCLATG--ARWGEAE-----------GLRISQVRNGVIQFV- 218

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
                   + K  K R VP+  S+ K +  ++                    G+ +    
Sbjct: 219 --------KTKSSKARAVPISKSLAKGLHAHFRTHG---------------EGERIFGTA 255

Query: 243 FQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  +   L+R  + LP     H LRH+FA+H + NGG++ S+Q  LGH  L+ T  Y ++
Sbjct: 256 WSAFREGLQRAKIVLPKGQLTHVLRHTFASHFMMNGGNILSLQRALGHHSLTMTMRYAHL 315

Query: 302 N 302
           +
Sbjct: 316 S 316


>gi|255008897|ref|ZP_05281023.1| putative phage integrase/recombinase [Bacteroides fragilis 3_1_12]
          Length = 368

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/248 (21%), Positives = 104/248 (41%), Gaps = 23/248 (9%)

Query: 52  FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111
           ++T  K   +   +++    R FI     +K    +++  ++ I+ F K++KK     E 
Sbjct: 125 YHTSMKKYFEYANEVNMDNCRRFIKMLEEEKFAPATIRLRITAIERFSKWMKK---PLEL 181

Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
               M+    +N++P    E +   L++ +   ++ +  +        + +L   G R+S
Sbjct: 182 KRPKMKRKLDTNNVP---TEDEYNRLLEYLKTKSNKDYYFF-------IRVLGTTGARLS 231

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           E L  T ++I+  + TL+  GKG+K R       +++ +  Y   C        +  LF 
Sbjct: 232 EFLQFTWEDIISGEVTLK--GKGNKYRRFFFQKQLQQEVKAYAKECG-------KTGLFA 282

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             R  P+      + ++      G+       H  RH FA   L    D+  +  +LGH 
Sbjct: 283 VGRFGPMTQRGLSQGMKAWGNCCGIDKKKMHPHAFRHFFAKMFLKKNKDVIQLADLLGHG 342

Query: 291 RLSTTQIY 298
            + TT+IY
Sbjct: 343 SVDTTRIY 350


>gi|107022780|ref|YP_621107.1| phage integrase [Burkholderia cenocepacia AU 1054]
 gi|105892969|gb|ABF76134.1| phage integrase [Burkholderia cenocepacia AU 1054]
          Length = 507

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 125/314 (39%), Gaps = 62/314 (19%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +ERG  LS LT +    D   +  FL   T     +   R     E R F     T  + 
Sbjct: 196 VERGKALSSLTSE----DATAYRAFLRHPTPRARWVAPARPRPSPEWRPF-----TGALS 246

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSL--PRALNEKQ---ALTL 137
             S+  +LS + +  ++L +++    ++   L +R  +++  L   RA    +     T+
Sbjct: 247 PDSIAYTLSVLSAMFRWLIEQRYVLANSFAGLRVRGAQRNGELDISRAFTAGEWELVRTI 306

Query: 138 VDNVLLHTSHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNI---MDDQSTLRIQ 191
            D   L  SH   W       + ++L   Y  GLR SE + +T   I      +  L + 
Sbjct: 307 ADG--LERSH--GWTVPAAQRLRFVLDFGYATGLRASELVGVTLGGIETGARGERWLHLT 362

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP---------GV 242
           GKG K   V L P    A+ +Y         +   LP+    R +P  P         G+
Sbjct: 363 GKGAKAGKVVLPPLATHALDQYL--------VQRGLPVT-SARWQPDTPLLGHLDAPGGI 413

Query: 243 FQRYIRQ-LRRYL---------------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
               +R+ LRR+                G     T H +RH+ ATH L+NG  L +++  
Sbjct: 414 TTPRLREVLRRFFHAAADAIEADHPALAGKLRRATPHWMRHTHATHALANGATLTTVRDN 473

Query: 287 LGHFRLSTTQIYTN 300
           L H  ++TT IY +
Sbjct: 474 LRHASITTTSIYLD 487


>gi|49176878|ref|YP_025381.1| putative Tn5504 resolvase [Ralstonia eutropha JMP134]
 gi|72384260|ref|YP_293613.1| phage integrase [Ralstonia eutropha JMP134]
 gi|134287694|ref|YP_001109860.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134287822|ref|YP_001109987.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134288066|ref|YP_001110230.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134291498|ref|YP_001115267.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|296163802|ref|ZP_06846493.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|39777458|gb|AAR31033.1| putative Tn5504 resolvase [Ralstonia eutropha JMP134]
 gi|72123613|gb|AAZ65756.1| phage integrase [Ralstonia eutropha JMP134]
 gi|134132344|gb|ABO60079.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134132472|gb|ABO60455.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134132716|gb|ABO60342.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134134687|gb|ABO59012.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|295885953|gb|EFG65880.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 563

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 127/304 (41%), Gaps = 43/304 (14%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           + LS LT +    D   +  FL   T  +  +   R  + T+ R F+       +  RS+
Sbjct: 259 KALSSLTTR----DATDYRAFLRRPTPRERWVGPPRPRTSTDWRPFV-----DNLSARSI 309

Query: 89  KRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT- 145
             +L+ + +  ++L +++  +    + + +R  K++     AL    A T  + +L  T 
Sbjct: 310 AHALAVLSAMFRWLVEQRYVVANPFSGIKVRGSKRAM----ALETSHAFTEGEWMLTRTI 365

Query: 146 ----SHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDDQST---LRIQGKGD 195
                    W       + ++L   Y  GLRISE    T ++I  D +    L + GKG 
Sbjct: 366 ANGLEWSYGWQAPAAQRLRFMLDFGYATGLRISELADATLRSIEVDAAGDHWLHVVGKGG 425

Query: 196 KIRIVPLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRG-----KPLN-PGVFQRY 246
           K   V L P  R A+  Y     L     + N    L   +       KPL    V +R+
Sbjct: 426 KPARVTLTPLARTALDRYLQERGLPVSRAHWNPTTSLIGSLDDADAGIKPLRLWEVMRRF 485

Query: 247 IRQLRRYL--GLPL------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            R + + +    P+        + H +RH+ ATH ++ G +L +++  L H  +STT IY
Sbjct: 486 FRLVAQIIKNDHPVLAEKLHRASPHWMRHTHATHAIARGVELSAVRDNLRHASISTTSIY 545

Query: 299 TNVN 302
            + +
Sbjct: 546 LHTD 549


>gi|312128949|ref|YP_003996289.1| integrase family protein [Leadbetterella byssophila DSM 17132]
 gi|311905495|gb|ADQ15936.1| integrase family protein [Leadbetterella byssophila DSM 17132]
          Length = 421

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 29/45 (64%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            T HT RH+FAT  L+ G  L S+  ++GH  +STTQIY  + S+
Sbjct: 348 VTFHTARHTFATMFLTEGVPLESLSKMMGHKNISTTQIYAKITSQ 392


>gi|297626300|ref|YP_003688063.1| Phage integrase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922065|emb|CBL56629.1| Phage integrase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 396

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 9/117 (7%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ--RYIR 248
           Q KG + R+VP+L ++ + +LE              +PL RG RG  L     +   +  
Sbjct: 258 QTKGRRARLVPILDAL-EPVLER-----LTAEKEPDVPLLRGPRGGVLTTATVRDATHWD 311

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            L + +GLP + T H LRH+ AT L   G  L  +Q ILGH  + TT+ Y + + ++
Sbjct: 312 DLVKDIGLP-NLTRHGLRHTGATWLADAGIPLHVLQEILGHQSIETTKGYLHPDHRH 367


>gi|218129569|ref|ZP_03458373.1| hypothetical protein BACEGG_01146 [Bacteroides eggerthii DSM 20697]
 gi|217988299|gb|EEC54622.1| hypothetical protein BACEGG_01146 [Bacteroides eggerthii DSM 20697]
          Length = 409

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 101/227 (44%), Gaps = 30/227 (13%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK--QALTLVDNVLLH 144
           +++  L+ +K   +   K       +  N    K+S   PRAL+ +  + +  V+     
Sbjct: 184 TVRHYLAILKKICRIAYKEGYAERCHFANFTLPKQSERTPRALSREDFEKIRDVEIPACR 243

Query: 145 TSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRI-- 199
           T+H    I  R+      L+ C  G   ++A+S+T  N+  DD   L ++ +  K  +  
Sbjct: 244 TTH----ILVRD----LFLFACYTGTAYADAVSVTRDNLYTDDDGNLWLKYRRKKNELQA 295

Query: 200 -VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            V LLP     I +Y+D      N     P+ R       +P + Q +++ L    G+  
Sbjct: 296 SVKLLPEALALIEKYHDD-----NRPTLFPMVR-------HPNLRQ-HMKSLAVLAGVSS 342

Query: 259 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +   H  RHSFA+ + L  G  + +I  +LGH  ++TTQ+Y  V  K
Sbjct: 343 TLCYHQARHSFASLITLEAGVPIETISRMLGHSDITTTQVYARVIPK 389


>gi|328554916|gb|AEB25408.1| integrase [Bacillus amyloliquefaciens TA208]
          Length = 343

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 133/316 (42%), Gaps = 31/316 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTE----EKITIQTIRQ----LSYTEIR----AFISK 77
           GL + TL  Y+   R F  +L    E    ++IT + +R     + Y + R     +I K
Sbjct: 40  GLRERTLTDYKKMWRYFTEWLNDNYEVTYIDEITTEILRNYINYMKYDKPRYHGHKYI-K 98

Query: 78  RRTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
               K+G  D ++  +L  IK+   YL + ++   +    ++ L++   L     + +  
Sbjct: 99  SDDNKVGLSDTTININLRTIKALFNYLDREELIEVNPATRVKLLRQDIDLTNCFTDDEI- 157

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG--- 192
                 +L   +   ++  R+   +  L   GLRI E LSL  ++I      + I     
Sbjct: 158 ----KAILRQPNLRDYVGFRDYCAMNCLLDSGLRIEELLSLREKDIDFSSRFITINADVS 213

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K  K R+VP+     K +L+   L   + +      +F    G+PL    F + ++    
Sbjct: 214 KNRKHRLVPISAHCVKLLLQ---LITENKSHFTTDRIFLSSYGEPLGANHFNKRLKYYAE 270

Query: 253 YLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             G+     TAH  RH++A  ++ NG D  ++Q I G   + T + Y  ++++     M 
Sbjct: 271 KAGVKDKKVTAHVYRHTWAKTMILNGCDPFTLQKIGGWSDIRTMRRYIQMDTRA----MR 326

Query: 312 EIYDQTHPSITQKDKK 327
             +D   P  T + KK
Sbjct: 327 RSHDDFSPLTTIRKKK 342


>gi|312964753|ref|ZP_07778994.1| resolvase [Escherichia coli 2362-75]
 gi|312290602|gb|EFR18481.1| resolvase [Escherichia coli 2362-75]
          Length = 123

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 51  VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 94


>gi|289549678|ref|YP_003470582.1| Tn554-related, transposase A [Staphylococcus lugdunensis HKU09-01]
 gi|289179210|gb|ADC86455.1| Tn554-related, transposase A [Staphylococcus lugdunensis HKU09-01]
          Length = 367

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 20/172 (11%)

Query: 142 LLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQST-------LRI 190
           +L TS   + I+A    R+  ++ LLY  GLRI E LSL   +I  D +         R 
Sbjct: 171 ILSTSEIKELINASKNLRDKFMIQLLYETGLRIGELLSLYIDDIKYDLTNGHQIILKTRK 230

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGK----PLNPGVF 243
              G +++       + +++++ YD   +++   +      LF  IRGK    PL+    
Sbjct: 231 NKNGARLKSGERKIYISQSLIDLYDDYLYEVLDEVSTSSEFLFIKIRGKHVGDPLDYNDV 290

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
               ++LR+  G+ +    H LRH+ AT   +   +++ +Q  LGH  + TT
Sbjct: 291 NSIFKRLRKKTGINVH--PHLLRHTHATIFYNKSKNIKQVQERLGHSNIQTT 340


>gi|153930591|ref|YP_001393280.1| putative integrase/resolvase [Yersinia pseudotuberculosis IP 31758]
 gi|152958135|gb|ABS45598.1| putative integrase/resolvase [Yersinia pseudotuberculosis IP 31758]
          Length = 263

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 26/177 (14%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQ--NIMDDQSTL-------RIQGKGDKI------ 197
           D R   ++  L+  G R++EAL+LTP   +I  D   +       R +G+G         
Sbjct: 69  DLRQRLLIETLWNTGARLNEALALTPACFHIEGDSPFVVLKTLKQRQKGRGRPKEGQTLK 128

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL------- 250
           RIVPLL      ++  Y L  F        PL+    G  ++    + ++R         
Sbjct: 129 RIVPLLDENYVRLVHEY-LATF--RPKKYAPLWVNEHGDTISDETPRTWLRAAVTRANRD 185

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                LP+  T  T RHSFA HL+ +G   + +Q+ +GH   ++T++YT + + + G
Sbjct: 186 SVTFSLPV-ITPKTFRHSFAMHLVQSGVAFKVVQTFMGHKDAASTEVYTRIFALDVG 241


>gi|325299288|ref|YP_004259205.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324318841|gb|ADY36732.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 409

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 20/150 (13%)

Query: 162 LLYGC--GLRISEALSLTPQNIM-DDQSTL---RIQGKGDKIRIVPLLPSVRKAILEYYD 215
            L+ C  G+  ++A+S+T  NI  DD+  L    ++ K + +  V LLP    A++E Y 
Sbjct: 253 FLFACYTGVPYADAVSITRDNIYKDDKGDLWLKYLRKKNEYLARVKLLPEA-IALIEKY- 310

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
                   N +  LF  I     +P + +R+++ LR   G+      H  RH+F + + L
Sbjct: 311 ------RSNDRKELFPMIH----HPNM-RRHMKGLRDLAGISCDLVYHMGRHTFGSLITL 359

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             G  + +I  +LGH  L+TTQ+Y  V  K
Sbjct: 360 EAGVPIETISKMLGHTNLTTTQLYARVTPK 389


>gi|294084585|ref|YP_003551343.1| phage integrase family protein [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664158|gb|ADE39259.1| phage integrase family protein [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 188

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 85/185 (45%), Gaps = 23/185 (12%)

Query: 132 KQALTLVD----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           KQA+TL D     VL + +  T+    R+  I+      GLR  E  +L   ++ D+  +
Sbjct: 2   KQAMTLTDAQQKRVLQYCA--TRRHPTRDKTIVLFSLHTGLRAMELAALKLGDVFDEDGS 59

Query: 188 LRIQ-------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKP 237
           ++ Q        KG   R V +   +RKA+ +Y +        N+  P   LF   +G  
Sbjct: 60  VKSQFQLAQRNTKGSNARTVFVNTKLRKALKDYGE------QSNLTQPERALFPSQKGGH 113

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
            +     +    + +  G   +++ H+ R +F T L ++G ++R + ++ GH  +S TQ 
Sbjct: 114 FSANTMCQLFLDIYKACGFEHASS-HSGRRTFITKLANSGVNVRLLATLAGHQHISVTQR 172

Query: 298 YTNVN 302
           Y +VN
Sbjct: 173 YIDVN 177


>gi|288801874|ref|ZP_06407316.1| integrase [Prevotella melaninogenica D18]
 gi|288335916|gb|EFC74349.1| integrase [Prevotella melaninogenica D18]
          Length = 328

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 88/211 (41%), Gaps = 38/211 (18%)

Query: 131 EKQALTLVD--NVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQS 186
           E+ ALT  D   +L +  H +      N   L  L GC  GL  S+   L     MDD  
Sbjct: 120 ERNALTADDLQKLLAYRPHRS----TDNHCRLIFLLGCFTGLAFSDLKKLR----MDDVY 171

Query: 187 TLR--------IQGKGDKIRIVPLLPSVRK--AILEYYDLCPFDLNLNIQLPLFRGIRGK 236
           T           + K     IVPLLP   K  AI+ +            +  LF   R  
Sbjct: 172 TFGDGRRYISLCRTKTQNRSIVPLLPVAEKILAIVSH----------GRREGLF--FREF 219

Query: 237 PLNPGVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLS 293
           P N   F R I+++    GL   T  T+HT RH+FAT + L NG  + ++  +LGH  +S
Sbjct: 220 PSNSN-FNRTIQEICIKAGLLPHTQATSHTARHTFATTICLENGLPIETVSKMLGHRFIS 278

Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           TT+IY  V        M  +    H  + +K
Sbjct: 279 TTEIYARVTKSKIAKEMQPLMGSEHTRVLRK 309


>gi|320193595|gb|EFW68230.1| type 1 fimbriae regulatory protein FimE [Escherichia coli
           WV_060327]
          Length = 198

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 66/158 (41%), Gaps = 2/158 (1%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILE 212
           AR+  ++ L Y  G+RISE L L  Q++  ++  + I+   +    V PL    R+A+  
Sbjct: 26  ARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVER 85

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +          +    +F   RG  L+     R IR      G    T  H LRH+    
Sbjct: 86  WTQERANWKGADRTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYE 145

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-GGDW 309
           L   G D R IQ  LGH  +  T  YT  N+    G W
Sbjct: 146 LAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLW 183


>gi|317505161|ref|ZP_07963098.1| putative tyrosine type site-specific recombinase [Prevotella
           salivae DSM 15606]
 gi|315663721|gb|EFV03451.1| putative tyrosine type site-specific recombinase [Prevotella
           salivae DSM 15606]
          Length = 422

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 75/165 (45%), Gaps = 26/165 (15%)

Query: 167 GLRISEALSLTPQNIM---DDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY--DLCPFD 220
           GL   +   L P++I+   D    +RI+  K D   I+PLLP + K IL  Y  D    D
Sbjct: 257 GLARVDMQRLKPKHIIHNADGTEEIRIKRQKTDVEAIIPLLP-IAKQILSLYIKDKKADD 315

Query: 221 L---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSN 276
           L   NL I+   F  +     N G   R  + L          T H  RH+F+T + LSN
Sbjct: 316 LIFPNLTIRKASFACV-----NIGQICRIEKGL----------TFHMARHTFSTTICLSN 360

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           G  + ++  +LGH  + TTQIY  +      + M  + D+ H + 
Sbjct: 361 GISMETLSKMLGHSNIGTTQIYGKITDHKIQEDMTALTDREHTAF 405


>gi|307268429|ref|ZP_07549807.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|306515236|gb|EFM83773.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
          Length = 309

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 13/147 (8%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212
            + L+   GLR SEAL+LTP++    +  + I+   +         S       RK  ++
Sbjct: 141 FILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGFFQSTKNESSKRKVQID 200

Query: 213 YYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +     F     N+    P+F  ++G+  N  +  R ++ L +   +P+  T H+LRH+ 
Sbjct: 201 WQTAMQFSQLIRNMPPMEPIF--VKGRVFNSTINNR-LKVLCKRAQIPV-ITVHSLRHTH 256

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           A+ LL  G  + S+ + LGH  ++TTQ
Sbjct: 257 ASLLLFAGVSIASVATRLGHSSMTTTQ 283


>gi|262068300|ref|ZP_06027912.1| integrase/recombinase, phage integrase family [Fusobacterium
           periodonticum ATCC 33693]
 gi|291377988|gb|EFE85506.1| integrase/recombinase, phage integrase family [Fusobacterium
           periodonticum ATCC 33693]
          Length = 329

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 108/249 (43%), Gaps = 21/249 (8%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK----SFLKYLKKRKITTESNILNM 116
           ++I+ ++  ++R ++     QK G+ S K ++  I+    SF  +L++     +S +  +
Sbjct: 88  KSIKHITTNDLREYLD--NYQKEGNAS-KITIDNIRRIFSSFFAWLEEEDYILKSPVRRI 144

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             +K    +    +++    + DN              R+ AI+ +L   G+R+ E + L
Sbjct: 145 HKVKTGTVVKETYSDEAMEIMRDNCK----------SLRDLAIIDILASTGMRVGELVKL 194

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
             ++I  +     + GKGDK R V    +  K  L  Y     D N  + + L +    K
Sbjct: 195 NIEDIDFEGRECVVFGKGDKERKV-YFDARTKIHLHNYLKTRDDDNSALFVSLLKP--HK 251

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L     +  +RQL R L +      H  R + AT  +  G  +  +Q +LGH ++ TT 
Sbjct: 252 RLQISGVEIMLRQLGRKLNIT-KVHPHKFRRTLATKAIDKGMPIEQVQQLLGHQKIDTTL 310

Query: 297 IYTNVNSKN 305
            Y  V+  N
Sbjct: 311 QYAMVSQNN 319


>gi|257078400|ref|ZP_05572761.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|294780397|ref|ZP_06745764.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis PC1.1]
 gi|256986430|gb|EEU73732.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|294452526|gb|EFG20961.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis PC1.1]
 gi|329575632|gb|EGG57165.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1467]
          Length = 309

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 13/147 (8%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212
            + L+   GLR SEAL+LTP++    +  + I+   +         S       RK  ++
Sbjct: 141 FILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGFFQSTKNESSKRKVQID 200

Query: 213 YYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +     F     N+    P+F  ++G+  N  +  R ++ L +   +P+  T H+LRH+ 
Sbjct: 201 WQTAMQFSQLIRNMPPMEPIF--VKGRVFNSTINNR-LKVLCKRAQIPV-ITVHSLRHTH 256

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           A+ LL  G  + S+ + LGH  ++TTQ
Sbjct: 257 ASLLLFAGVSIASVATRLGHSSMTTTQ 283


>gi|255009533|ref|ZP_05281659.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313147308|ref|ZP_07809501.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313136075|gb|EFR53435.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 372

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 77/173 (44%), Gaps = 32/173 (18%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQS-----TLRIQGKGDKIRIVPLLPSVRKAILEYY 214
            L+GC  GLR S+   LT Q I    +     T R+Q K  +I   P+         E Y
Sbjct: 224 FLFGCLTGLRKSDIKQLTWQQIQPYTNGKMFVTTRMQ-KTKQIVHNPISD-------EAY 275

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
            L    L    +  +F G + K L  G  +R++       G+    T H  RHSF +  +
Sbjct: 276 GL----LGERCEGLIFDGFKDKMLQ-GPLKRWLLAA----GITKKITFHCTRHSFGSLHV 326

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
             G D+  IQ+ LGH  ++TTQIY    SK     M E+ D+    IT K KK
Sbjct: 327 EMGTDMAVIQAYLGHKNITTTQIY----SKMAAQQMCEVVDK----ITLKRKK 371


>gi|213052516|ref|ZP_03345394.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
          Length = 94

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 234 RGKPLNP--GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           +GK   P    F+R ++  R  + LP     H LRH+FA+H + NGG++  ++ ILGH  
Sbjct: 6   QGKLFTPCRKSFERAVK--RAGIELPEGQCTHVLRHTFASHFMMNGGNILVLRDILGHAD 63

Query: 292 LSTTQIYTN 300
           +  T +Y +
Sbjct: 64  IKMTMVYAH 72


>gi|41179218|ref|NP_958556.1| putative integrase [Lactobacillus prophage Lj965]
 gi|42518375|ref|NP_964305.1| Lj965 prophage integrase [Lactobacillus johnsonii NCC 533]
 gi|38731488|gb|AAR27434.1| putative integrase [Lactobacillus prophage Lj965]
 gi|41582660|gb|AAS08271.1| Lj965 prophage integrase [Lactobacillus johnsonii NCC 533]
          Length = 391

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 40/182 (21%)

Query: 162 LLYGCGLRISEALSLTPQNI----------------MDDQSTLRIQGKGDKIRIVPLLPS 205
           LL   GLR SEAL+LT Q+I                +D+++ ++        RI+P+  S
Sbjct: 205 LLSATGLRKSEALALTWQDIDLKAGTLSINKTLAYGLDNKTIIQPPKSPKSKRILPISDS 264

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR--------RY---- 253
           +++ +++Y           I   LF  I+G  L      ++++ +         +Y    
Sbjct: 265 LKEVLIDYKQKQKI-----ISNKLFHTIKGTYLKMSKPDQWLKSIYAKDHEEKVKYAKTH 319

Query: 254 -LGLPLST----TAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTT-QIYTNVNSKNG 306
            L  P       T H  RH+FAT L++      +++Q +LGH  +  T  IYT+VN+KN 
Sbjct: 320 NLKEPQPDLRHITVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQMTLDIYTHVNNKNK 379

Query: 307 GD 308
            D
Sbjct: 380 ED 381


>gi|24379472|ref|NP_721427.1| site-specific tyrosine recombinase XerS [Streptococcus mutans
           UA159]
 gi|34222767|sp|O69155|XERS_STRMU RecName: Full=Tyrosine recombinase xerS
 gi|24377409|gb|AAN58733.1|AE014942_9 putative integrase/recombinase; XerC-like [Streptococcus mutans
           UA159]
          Length = 356

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 119/300 (39%), Gaps = 60/300 (20%)

Query: 58  ITIQTIRQLSYTEIRAFI----------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI 107
           I ++T+  LS  ++ +FI          +K + Q +   ++ R+LS + S  KYL +   
Sbjct: 66  IPLETLEHLSKKDMESFILYLRERTLLNTKNKRQGVSQTTINRTLSALSSLYKYLTEEVE 125

Query: 108 TTESNILNMRNLKKSNSL--------PRALNEKQALTLVDNVL-----LHTSHETKWID- 153
             +      RN+ K  S          RA N KQ L L +  +     +   +E K    
Sbjct: 126 NADGEPYFYRNVMKKVSTKKKKETLAARAENIKQKLFLGNETMEFLEYVDCEYEHKLSKR 185

Query: 154 ---------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
                     R+ AI+ LL   G+R+SEA++L  +++  +   + +  KG K   V +  
Sbjct: 186 ALSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVTRKGGKHDSVNV-A 244

Query: 205 SVRKAILEYY-------------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
              K  LE Y             DL  F       L  +RG+  + ++    ++ + +  
Sbjct: 245 GFAKPYLENYITIRRGRYKAKKTDLAFF-------LSEYRGVPNR-MDASSIEKMVAKYS 296

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGD 308
           +     +  T H LRH+ AT L         +   LGH     T +YT++     KN  D
Sbjct: 297 Q--DFKIRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|330909749|gb|EGH38259.1| type 1 fimbriae regulatory protein FimE [Escherichia coli AA86]
          Length = 202

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 66/158 (41%), Gaps = 2/158 (1%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILE 212
           AR+  ++ L Y  G+RISE L L  Q++  ++  + I+   +    V PL    R+A+  
Sbjct: 26  ARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVER 85

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +          +    +F   RG  L+     R IR      G    T  H LRH+    
Sbjct: 86  WTQERANWKGADRTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYE 145

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-GGDW 309
           L   G D R IQ  LGH  +  T  YT  N+    G W
Sbjct: 146 LAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLW 183


>gi|325297479|ref|YP_004257396.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317032|gb|ADY34923.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 409

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 99/228 (43%), Gaps = 32/228 (14%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           +++  L+ +K   +   K       +  N    +K+   PRAL+ +    + D  +    
Sbjct: 184 TVRHYLAILKKVCRIAYKEGYAERCHFANFTLPQKTERTPRALSREDFEKIRDVEI---- 239

Query: 147 HETKWIDARNSAILY---LLYGC--GLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRI- 199
               W   R + IL     L+ C  G   ++A+S+T  N+  DD+  L ++ +  K  + 
Sbjct: 240 --PAW---RTTHILVRDLFLFACYTGTAYADAVSVTRDNLYTDDEGCLWLKYRRQKNELR 294

Query: 200 --VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
             V LLP     I +Y+D      N     P+         +P + +R+++ L    G+ 
Sbjct: 295 ASVKLLPEALALIEKYHDD-----NRPTLFPMV-------YHPNL-RRHMKSLAVLAGVS 341

Query: 258 LSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            +   H  RHSFA+ + L  G  + +I  +LGH  + TTQ+Y  V  K
Sbjct: 342 STLCYHQARHSFASLITLEAGVPIETISRMLGHSNIQTTQVYARVTPK 389


>gi|320180759|gb|EFW55685.1| Integrase [Shigella boydii ATCC 9905]
 gi|320196862|gb|EFW71484.1| Integrase [Escherichia coli WV_060327]
          Length = 326

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 243 FQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           ++++   LRR    +P +   H LRH+FA+H + NGG++ ++Q ILGH  +  T  Y ++
Sbjct: 247 YEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 306


>gi|290474812|ref|YP_003467692.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii
           SS-2004]
 gi|289174125|emb|CBJ80912.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii
           SS-2004]
          Length = 210

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 2/157 (1%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
           RN  + ++ +  G R+SE L L   ++ + D+S    + K     I P++    + I ++
Sbjct: 27  RNICMFFMGFIHGFRVSELLRLRMSDVDLRDRSLSVNRLKNGFSTIHPMIAREIQLIRKW 86

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
             +            LF    G+PL+   F + IR       + +    H LRHS    L
Sbjct: 87  MTIRKKLEKFGKSEWLFISRTGEPLSRQQFYKIIRNTSIKAEIAICANPHMLRHSCGYAL 146

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNS-KNGGDW 309
             NG D R IQ  LGH  +  T IYT  N+ +  G W
Sbjct: 147 ADNGVDTRLIQDYLGHRNIRHTVIYTASNAGRFDGIW 183


>gi|296088960|emb|CBI38526.3| unnamed protein product [Vitis vinifera]
          Length = 158

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 87  VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 130


>gi|326204963|ref|ZP_08194815.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
 gi|325984892|gb|EGD45736.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
          Length = 375

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 4/77 (5%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDL--RSIQS 285
           LF   RG  L P    R  ++  +  GLP    + H LRHS+ +HL S   D+  R IQ 
Sbjct: 278 LFLSERGTMLTPNSITRNFKEYLKSAGLPYEHFSPHCLRHSYISHL-SEKDDVSPRFIQD 336

Query: 286 ILGHFRLSTTQIYTNVN 302
            +GH  L+TTQ+YT+++
Sbjct: 337 QVGHVFLATTQLYTHLS 353


>gi|257063564|ref|YP_003143236.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
 gi|256791217|gb|ACV21887.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
          Length = 460

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 40/74 (54%), Gaps = 5/74 (6%)

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTN---VNSKN 305
            R  LG P     H LRH+ AT LL NG D++S+Q+ LGH R S T   Y +    N K 
Sbjct: 377 FRDSLGFP-ELNMHELRHTQATMLLGNGIDVKSVQTRLGHSRASVTLDQYAHAIPANDKA 435

Query: 306 GGDWMMEIYDQTHP 319
             D M EI +++ P
Sbjct: 436 AADLMGEIMNKSVP 449


>gi|227517376|ref|ZP_03947425.1| bacteriophage integrase [Enterococcus faecalis TX0104]
 gi|229548135|ref|ZP_04436860.1| bacteriophage integrase [Enterococcus faecalis ATCC 29200]
 gi|256958289|ref|ZP_05562460.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|257088127|ref|ZP_05582488.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257091256|ref|ZP_05585617.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|307274411|ref|ZP_07555595.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|312905315|ref|ZP_07764430.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|227075175|gb|EEI13138.1| bacteriophage integrase [Enterococcus faecalis TX0104]
 gi|229306736|gb|EEN72732.1| bacteriophage integrase [Enterococcus faecalis ATCC 29200]
 gi|256948785|gb|EEU65417.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256996157|gb|EEU83459.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257000068|gb|EEU86588.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|306508921|gb|EFM78007.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|310631339|gb|EFQ14622.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|315026884|gb|EFT38816.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2137]
 gi|315036577|gb|EFT48509.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0027]
 gi|315162494|gb|EFU06511.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0645]
 gi|315578594|gb|EFU90785.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0630]
          Length = 309

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 13/147 (8%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212
            + L+   GLR SEAL+LTP++    +  + I+   +         S       RK  ++
Sbjct: 141 FILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGFFQSTKNESSKRKVQID 200

Query: 213 YYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +     F     N+    P+F  ++G+  N  +  R ++ L +   +P+  T H+LRH+ 
Sbjct: 201 WQTAMQFSQLIRNMPPMEPIF--VKGRVFNSTINSR-LKVLCKRAQIPV-ITVHSLRHTH 256

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           A+ LL  G  + S+ + LGH  ++TTQ
Sbjct: 257 ASLLLFAGVSIASVATRLGHSSMTTTQ 283


>gi|255281089|ref|ZP_05345644.1| site-specific recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
 gi|255268537|gb|EET61742.1| site-specific recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
          Length = 291

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 9/153 (5%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           + R S I+  +   G+R+SE   +T + +   ++ + ++GK    R V L   + + +L+
Sbjct: 134 NTRLSLIMQTICSTGIRVSELEFITVEALYSGRAIVSLKGK---TRAVLLPAELCRKLLK 190

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFAT 271
           Y           +   +F    G PL+       ++ L    G+ P     H LRH FA 
Sbjct: 191 YVRAHNI-----VNGCVFVSRNGNPLDRSNIFHDMKALCETAGVSPQKVFPHNLRHLFAV 245

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
                  D+  +  ILGH  + TT+IYT VN K
Sbjct: 246 TYYEEEKDIAHLADILGHSSIDTTRIYTLVNGK 278


>gi|197302009|ref|ZP_03167072.1| hypothetical protein RUMLAC_00739 [Ruminococcus lactaris ATCC
           29176]
 gi|197298957|gb|EDY33494.1| hypothetical protein RUMLAC_00739 [Ruminococcus lactaris ATCC
           29176]
          Length = 308

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 80/184 (43%), Gaps = 23/184 (12%)

Query: 126 PRA-----LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           PRA     LN+ +  TL+ +  L    E  W        + L+   G+R SEAL++TP +
Sbjct: 110 PRAKKIKYLNQFELHTLIAH--LDIREEVNW-----DWFILLVAKTGMRFSEALAITPSD 162

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEYYDLCPFD---LNLNIQLPLFRG 232
               + TL I    D       LP     SVRK  +++  +  F     NL    P+F G
Sbjct: 163 FDFARQTLSISKTWDYKGNGGFLPTKNNSSVRKIQIDWQIVVKFSELTKNLPEDKPIFVG 222

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
              K  N  V     R  +   G+    + H LRH+ A+ LL  G  + S+   LGH  +
Sbjct: 223 -ETKIYNSTVNDVLTRHCKA-CGIS-EISIHGLRHTHASLLLFAGVSIASVARRLGHASM 279

Query: 293 STTQ 296
           +TTQ
Sbjct: 280 TTTQ 283


>gi|53712520|ref|YP_098512.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52215385|dbj|BAD47978.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 419

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 26/143 (18%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           GLR  +   L  + I  D +  R+     K + V  +P   +A+     LC         
Sbjct: 273 GLRHCDIQKLRWKEISMDGNQARLHFTQQKTKGVEYMPISEQAL----QLC--------- 319

Query: 227 LPLFRGIRGKPL--------NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
                G R KP         +P    + +++     G+    T H  RH+FAT  LS+  
Sbjct: 320 -----GERRKPEQLVFEDLPDPAWISKPLKKWVESAGIKKKITYHCFRHTFATLQLSSST 374

Query: 279 DLRSIQSILGHFRLSTTQIYTNV 301
           D+ ++  +LGH  + TTQIY  V
Sbjct: 375 DIYTVSKMLGHTNVKTTQIYAKV 397


>gi|265756479|ref|ZP_06090685.1| transposase [Bacteroides sp. 3_1_33FAA]
 gi|263233667|gb|EEZ19282.1| transposase [Bacteroides sp. 3_1_33FAA]
          Length = 409

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 84/192 (43%), Gaps = 27/192 (14%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           KK N  P+AL  +  L + D   L      K +       L+  Y  G   ++ +S+T +
Sbjct: 218 KKENP-PKALTREDFLKIRD---LEIPERRKSLALTRDLFLFACY-TGTAYADTVSITEE 272

Query: 180 NIMDDQST---LRIQGKGDKIRI-VPLLPSVRKAILEYYDLCPFDLNLNIQLPL--FRGI 233
           N+  D+     L+   K +K+   V LLP     + +Y D  P    L   LP   FR +
Sbjct: 273 NLFRDEEGSLWLKYHRKKNKMLARVKLLPEALSMLEKYKD--PTRPTL---LPPQEFRVL 327

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRL 292
           RG           ++ LR   G+ +    H  RHSFA+ + L  G  + +I  +LGH  +
Sbjct: 328 RGN----------MKSLRVLSGISMDLVYHVGRHSFASLVTLEEGVPIETISRMLGHNNI 377

Query: 293 STTQIYTNVNSK 304
            TTQIY  V  K
Sbjct: 378 QTTQIYARVTPK 389


>gi|290580525|ref|YP_003484917.1| putative integrase/recombinase [Streptococcus mutans NN2025]
 gi|254997424|dbj|BAH88025.1| putative integrase/recombinase [Streptococcus mutans NN2025]
          Length = 356

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 119/300 (39%), Gaps = 60/300 (20%)

Query: 58  ITIQTIRQLSYTEIRAFI----------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI 107
           I ++T+  LS  ++ +FI          +K + Q +   ++ R+LS + S  KYL +   
Sbjct: 66  IPLETLEHLSKKDMESFILYLRERTLLNTKNKRQGVSQTTINRTLSALSSLYKYLTEEVE 125

Query: 108 TTESNILNMRNLKKSNSL--------PRALNEKQALTLVDNVL-----LHTSHETKWID- 153
             +      RN+ K  S          RA N KQ L L +  +     +   +E K    
Sbjct: 126 NADGEPYFYRNVMKKVSTKKKKETLAARAENIKQKLFLGNETMEFLEYVDCEYEHKLSKR 185

Query: 154 ---------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
                     R+ AI+ LL   G+R+SEA++L  +++  +   + +  KG K   V +  
Sbjct: 186 ALSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVTRKGGKHDSVNV-A 244

Query: 205 SVRKAILEYY-------------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
              K  LE Y             DL  F       L  +RG+  + ++    ++ + +  
Sbjct: 245 GFAKPYLENYITIRRGRYKAEKTDLAFF-------LSEYRGVPNR-MDASSIEKMVAKYS 296

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGD 308
           +     +  T H LRH+ AT L         +   LGH     T +YT++     KN  D
Sbjct: 297 Q--DFKIRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|238903406|ref|YP_002929202.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli BW2952]
 gi|238863731|gb|ACR65729.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli BW2952]
          Length = 201

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 66/158 (41%), Gaps = 2/158 (1%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILE 212
           AR+  ++ L Y  G+RISE L L  Q++  ++  + I+   +    V PL    R+A+  
Sbjct: 29  ARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVER 88

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +          +    +F   RG  L+     R IR      G    T  H LRH+    
Sbjct: 89  WTQERANWKGADRTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYE 148

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-GGDW 309
           L   G D R IQ  LGH  +  T  YT  N+    G W
Sbjct: 149 LAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLW 186


>gi|218249160|ref|YP_002374530.1| integrase domain protein SAM domain protein [Cyanothece sp. PCC
           8801]
 gi|218169736|gb|ACK68470.1| integrase domain protein SAM domain protein [Cyanothece sp. PCC
           8801]
          Length = 314

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 109/267 (40%), Gaps = 29/267 (10%)

Query: 22  LQNLEIERGLS--KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           LQN+ +E  L+   L+  S +   R+ L FLA   +    IQ+   + Y         + 
Sbjct: 21  LQNVRVEEFLATKALSPNSQKAYRRELLTFLAIVNKPFARIQSRHIVQY-------KVQL 73

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           T+K+   S+ R+LS + SF  +L++      +  L +R  K      R L++ +   L +
Sbjct: 74  TEKLAPSSVNRALSALSSFFDWLEE-AYGNPNPTLTIRQNKLPLPPARDLSDAELEALFE 132

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDK 196
            +     +       R+ A+   L   GLR  E  SL     + D   +R+     K D 
Sbjct: 133 AL----ENRPNLTKVRDKAVFAALR-HGLRAGEVASLN----LGDYDGIRLHIRVAKDDS 183

Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQR-----YIRQL 250
              VPL    R AI  Y         + N   PLF      P  P  F       +I++L
Sbjct: 184 SGHVPLDAPGRDAINTYLQQRRETGESFNPTSPLFLSHSPVPNTPPRFGYQGIYYFIKEL 243

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNG 277
               G+  + T H LRH+FAT LL  G
Sbjct: 244 GEMAGV-ANLTPHRLRHTFATQLLLTG 269


>gi|300899506|ref|ZP_07117748.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|300922907|ref|ZP_07138984.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|300947236|ref|ZP_07161442.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 116-1]
 gi|300356911|gb|EFJ72781.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|300420785|gb|EFK04096.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|300453136|gb|EFK16756.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 116-1]
          Length = 336

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 243 FQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           ++++   LRR    +P +   H LRH+FA+H + NGG++ ++Q ILGH  +  T  Y ++
Sbjct: 257 YEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 316


>gi|225376750|ref|ZP_03753971.1| hypothetical protein ROSEINA2194_02392 [Roseburia inulinivorans DSM
           16841]
 gi|225211376|gb|EEG93730.1| hypothetical protein ROSEINA2194_02392 [Roseburia inulinivorans DSM
           16841]
          Length = 323

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 127/289 (43%), Gaps = 31/289 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L    +ER   K T++ Y C+  + L        + I I  I+ ++   +R ++ + +T
Sbjct: 52  FLTTKHLERCSDK-TIRYYRCNIEKML--------DTINIPVIK-ITTEMLRKYLVEYQT 101

Query: 81  ----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                K+   +++RSLS   +F  +L++     +S +  +  +K +  +   + +++   
Sbjct: 102 INNCGKVTIDNIRRSLS---TFFSWLEEEDYIIKSPMKRIHKVKTAVIVKDTIPDEKIEI 158

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L DN            + R+ A++  L   G+R+ E + L   +I   +    + GKGDK
Sbjct: 159 LRDNCN----------NLRDRAMIDFLLSTGIRVGELVRLNIDDIDFSERECVVYGKGDK 208

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R        +  +L Y +    D N+ + + L +    +    GV  R +R++ + LG+
Sbjct: 209 ERKAYFDAKTKIHLLNYIE-SRTDNNIALFVSLNKP-HSRLTESGVELR-LREMGKKLGV 265

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
                 H  R +  T  +  G  +  +Q ILGH ++ TT  Y  VN  N
Sbjct: 266 E-KVHPHKFRRTMDTRAIEKGMLIEQVQKILGHEQIDTTLRYAMVNQNN 313


>gi|254975124|ref|ZP_05271596.1| phage integrase family site specific recombinase [Clostridium
           difficile QCD-66c26]
 gi|255092513|ref|ZP_05321991.1| phage integrase family site specific recombinase [Clostridium
           difficile CIP 107932]
 gi|255306536|ref|ZP_05350707.1| phage integrase family site specific recombinase [Clostridium
           difficile ATCC 43255]
 gi|255314251|ref|ZP_05355834.1| phage integrase family site specific recombinase [Clostridium
           difficile QCD-76w55]
 gi|255516930|ref|ZP_05384606.1| phage integrase family site specific recombinase [Clostridium
           difficile QCD-97b34]
 gi|255650033|ref|ZP_05396935.1| phage integrase family site specific recombinase [Clostridium
           difficile QCD-37x79]
 gi|260683181|ref|YP_003214466.1| prophage lambdaba04, site-specific recombinase [Clostridium
           difficile CD196]
 gi|260686779|ref|YP_003217912.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium difficile R20291]
 gi|306519568|ref|ZP_07405915.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family protein [Clostridium difficile QCD-32g58]
 gi|260209344|emb|CBA62764.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium difficile CD196]
 gi|260212795|emb|CBE03954.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium difficile R20291]
          Length = 376

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 3/71 (4%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G+ +N       +RQ+R  + L      H+LRH+ AT LL NG +++ IQ+ LGH +LST
Sbjct: 294 GQQVNTHTLDTIVRQIR--VALNNDFHFHSLRHAHATLLLENGANIKDIQNRLGHSQLST 351

Query: 295 T-QIYTNVNSK 304
           T   Y++V  K
Sbjct: 352 TMDTYSHVTDK 362


>gi|30065733|ref|NP_839878.1| Int [Yersinia phage L-413C]
 gi|293417378|ref|ZP_06660002.1| phage integrase family site-specific recombinase [Escherichia coli
           B185]
 gi|30025927|gb|AAP04466.1| Int [Yersinia phage L-413C]
 gi|291430898|gb|EFF03894.1| phage integrase family site-specific recombinase [Escherichia coli
           B185]
          Length = 326

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 243 FQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           ++++   LRR    +P +   H LRH+FA+H + NGG++ ++Q ILGH  +  T  Y ++
Sbjct: 247 YEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 306


>gi|227551861|ref|ZP_03981910.1| phage integrase family site specific recombinase [Enterococcus
           faecium TX1330]
 gi|227179033|gb|EEI60005.1| phage integrase family site specific recombinase [Enterococcus
           faecium TX1330]
          Length = 409

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 31/171 (18%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ----GKGDK-----------------IRIV 200
           +++  GLR SEAL L   +I   Q+TL I     G  +K                  R +
Sbjct: 216 IIFDQGLRKSEALGLQWADIDFSQNTLNINRERLGAAEKGPNKGLIITDDTKTPSGTRSL 275

Query: 201 PLLPSVRKAIL-------EYYDLCPF--DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           P+   V+KA+L       + +   P   D    + +  +R  +G P+          ++ 
Sbjct: 276 PMTKRVKKALLTLRNQVIKEFGFLPETDDHEAFLFINTYRKNKGIPIRDRTVNGASHRIE 335

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +   LP   T H  RH+FA      G  L  I+  LGH  +STTQ+Y +++
Sbjct: 336 KRANLP-HITVHDGRHTFAARTRQAGIPLEDIKDFLGHKDVSTTQVYAHIS 385


>gi|148974962|ref|ZP_01811942.1| Integrase [Vibrionales bacterium SWAT-3]
 gi|145965471|gb|EDK30720.1| Integrase [Vibrionales bacterium SWAT-3]
          Length = 125

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 6/71 (8%)

Query: 236 KPLNPGVFQR------YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           KP +  +F++      YI + +  + LP    +H LRHSFA+H + NGG++  ++ ILGH
Sbjct: 37  KPTSGKLFEQCYTPFCYILKNKLGISLPSGQASHVLRHSFASHFMMNGGNILVLRDILGH 96

Query: 290 FRLSTTQIYTN 300
             +S T  Y +
Sbjct: 97  ADISMTMRYAH 107


>gi|87162323|ref|YP_493499.1| integrase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|161509091|ref|YP_001574750.1| integrase [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|294850166|ref|ZP_06790902.1| integrase [Staphylococcus aureus A9754]
 gi|87128297|gb|ABD22811.1| integrase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|160367900|gb|ABX28871.1| integrase [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|294822940|gb|EFG39373.1| integrase [Staphylococcus aureus A9754]
 gi|315197242|gb|EFU27580.1| integrase [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140818|gb|EFW32666.1| site-specific recombinase, phage integrase family [Staphylococcus
           aureus subsp. aureus MRSA131]
 gi|320142989|gb|EFW34781.1| site-specific recombinase, phage integrase family [Staphylococcus
           aureus subsp. aureus MRSA177]
          Length = 406

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 30/171 (17%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGK---------GDKIRIVPLLPS------------ 205
           G+RI E L++  ++I  D  +L I G          G  ++      S            
Sbjct: 230 GMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSC 289

Query: 206 --VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
             ++KAILE      ++   LN N    +F   +G P+    F + +R+  + +G+    
Sbjct: 290 EILKKAILENKKDSKWNDGYLNRNF---VFTNHKGNPMQTERFNKILREAAKDVGIDKEV 346

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           ++H LRHS  + L   G  L++I   +GH    TT  IY++V  +   D M
Sbjct: 347 SSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMM 397


>gi|91213958|ref|YP_543944.1| tyrosine recombinase [Escherichia coli UTI89]
 gi|110644754|ref|YP_672484.1| tyrosine recombinase [Escherichia coli 536]
 gi|117626621|ref|YP_859944.1| tyrosine recombinase [Escherichia coli APEC O1]
 gi|191170750|ref|ZP_03032302.1| type 1 fimbriae regulatory protein FimE [Escherichia coli F11]
 gi|215489637|ref|YP_002332068.1| tyrosine recombinase [Escherichia coli O127:H6 str. E2348/69]
 gi|218692718|ref|YP_002400930.1| tyrosine recombinase [Escherichia coli ED1a]
 gi|91075532|gb|ABE10413.1| type 1 fimbriae regulatory protein FimE [Escherichia coli UTI89]
 gi|110346346|gb|ABG72583.1| type 1 fimbriae regulatory protein FimE [Escherichia coli 536]
 gi|115515745|gb|ABJ03820.1| type 1 fimbriae regulatory protein FimE [Escherichia coli APEC O1]
 gi|190908974|gb|EDV68561.1| type 1 fimbriae regulatory protein FimE [Escherichia coli F11]
 gi|215267709|emb|CAS12168.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218430282|emb|CAV18156.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli ED1a]
 gi|222036049|emb|CAP78794.1| Type 1 fimbriae regulatory protein fimE [Escherichia coli LF82]
 gi|294490349|gb|ADE89105.1| type 1 fimbriae regulatory protein FimE [Escherichia coli IHE3034]
 gi|307629471|gb|ADN73775.1| tyrosine recombinase [Escherichia coli UM146]
 gi|312948932|gb|ADR29759.1| tyrosine recombinase [Escherichia coli O83:H1 str. NRG 857C]
          Length = 198

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 66/158 (41%), Gaps = 2/158 (1%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILE 212
           AR+  ++ L Y  G+RISE L L  Q++  ++  + I+   +    V PL    R+A+  
Sbjct: 26  ARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVER 85

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +          +    +F   RG  L+     R IR      G    T  H LRH+    
Sbjct: 86  WTQERANWKGADRTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYE 145

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-GGDW 309
           L   G D R IQ  LGH  +  T  YT  N+    G W
Sbjct: 146 LAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLW 183


>gi|332829724|gb|EGK02370.1| hypothetical protein HMPREF9455_01640 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 307

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            KP  P  ++ Y +Q  + + +P+    H LRHSFAT  + +  D +++  ILGH  +ST
Sbjct: 224 SKPTEPRTYRNYYKQFMQEINVPV-LKFHGLRHSFATRCIESKCDYKTVSVILGHSNIST 282

Query: 295 T 295
           T
Sbjct: 283 T 283


>gi|330468542|ref|YP_004406285.1| integrase family protein [Verrucosispora maris AB-18-032]
 gi|328811513|gb|AEB45685.1| integrase family protein [Verrucosispora maris AB-18-032]
          Length = 230

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 43/163 (26%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI--------------QGKGDKIRIVPLLPSVR 207
           L  GCGLR  E   ++P ++   +  L++                KG K R VPL  SV 
Sbjct: 28  LGAGCGLRQGEIFGVSPTDLDPTRPVLQVVRQVKLVRGALIFAPPKGGKTREVPLPASVS 87

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-------------------NPGVFQRYIR 248
           + + E+ +  P    + + LP +    G P+                   NPGV++  IR
Sbjct: 88  RRLAEHAEQYP---PVEVALP-WATPTGDPVSVTLYLTDADDLPLSRSKFNPGVWKHAIR 143

Query: 249 QLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
                 G+P       H LRH++A+ LL  G  ++++ + LGH
Sbjct: 144 AT----GIPDDRRNGMHVLRHTYASVLLDAGESIKALSTYLGH 182


>gi|307564601|ref|ZP_07627138.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307346686|gb|EFN91986.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 439

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 80/181 (44%), Gaps = 22/181 (12%)

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTL 188
           E+ ALT  D   L +    + +D  N   L  L GC  GL  S+   L   ++       
Sbjct: 219 ERNALTSDDLHKLLSYRPHRSVD--NHCRLIFLLGCFTGLAFSDLKKLRMGDVYTFGDGR 276

Query: 189 R----IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           R     + K     IVPLLP   + +    D     L       LFR     P N   F 
Sbjct: 277 RYISLCRTKTQNRSIVPLLPIAEEILTIVSDGRKEGL-------LFREF---PTN-SHFN 325

Query: 245 RYIRQLRRYLGLPLST--TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R IR +    GLP  T  T+HT RH+FAT + L NG  + ++  +LGH  +STT++Y  V
Sbjct: 326 RKIRDIIIKAGLPSHTEATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAKV 385

Query: 302 N 302
           +
Sbjct: 386 S 386


>gi|303243202|ref|ZP_07329630.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302589257|gb|EFL59077.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 278

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 120/278 (43%), Gaps = 31/278 (11%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL-SGI--- 95
           E  T Q + FL +     I+   I  + Y      IS  ++ K  D S  RS  SGI   
Sbjct: 2   EAKTIQVIRFLNY-----ISNNGIENIKYISADYIISYAKSLK--DASYARSTRSGILFT 54

Query: 96  -KSFLKYLKKRKITTES--NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
            +SFL +L  ++  +E    +  +    KS  +P   +E +    +  +LLH + + + I
Sbjct: 55  LRSFLSFLHDKQYISEPLQGLFPVIFSNKSERIPSYYSEDE----LKKILLHVNRD-EII 109

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI-VPLLPSVRKAIL 211
             R+  IL L    G+R  +   L  + I  +++T+    +  K  I +PL  +V+ A++
Sbjct: 110 GKRDYLILLLAIQLGIRAGDIRMLKLEYIHWEKNTIEFTQQKTKNPIQLPLPENVKFAMI 169

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ-LRRYL---GLPLSTTAHTL-- 265
           +Y      +      LP        P +P V        + RYL   G+  S   H L  
Sbjct: 170 DYIK----NGRPKSSLPYIFLRHRAPYDPYVATNVFHDVITRYLIEAGISFSGRKHGLHS 225

Query: 266 -RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            RHS A++LL N      I  ILGH   STT+ Y  ++
Sbjct: 226 ARHSLASNLLKNNTPYPVITGILGHENTSTTRSYLAID 263


>gi|257895547|ref|ZP_05675200.1| site-specific recombinase [Enterococcus faecium Com12]
 gi|257832112|gb|EEV58533.1| site-specific recombinase [Enterococcus faecium Com12]
          Length = 407

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 31/171 (18%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ----GKGDK-----------------IRIV 200
           +++  GLR SEAL L   +I   Q+TL I     G  +K                  R +
Sbjct: 214 IIFDQGLRKSEALGLQWADIDFSQNTLNINRERLGAAEKGPNKGLIITDDTKTPSGTRSL 273

Query: 201 PLLPSVRKAIL-------EYYDLCPF--DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           P+   V+KA+L       + +   P   D    + +  +R  +G P+          ++ 
Sbjct: 274 PMTKRVKKALLTLRNQVIKEFGFLPETDDHEAFLFINTYRKNKGIPIRDRTVNGASHRIE 333

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +   LP   T H  RH+FA      G  L  I+  LGH  +STTQ+Y +++
Sbjct: 334 KRANLP-HITVHDGRHTFAARTRQAGIPLEDIKDFLGHKDVSTTQVYAHIS 383


>gi|237744716|ref|ZP_04575197.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
 gi|229431945|gb|EEO42157.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
          Length = 329

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 108/249 (43%), Gaps = 21/249 (8%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK----SFLKYLKKRKITTESNILNM 116
           ++I+ ++  ++R ++     QK G+ S K ++  I+    SF  +L++     +S +  +
Sbjct: 88  KSIKHITTNDLREYLDN--YQKEGNAS-KITIDNIRRIFSSFFAWLEEEDYILKSPVRRI 144

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             +K    +    +++    + DN              R+ AI+ +L   G+R+ E + L
Sbjct: 145 HKVKTGTVVKETYSDEAMEIMRDNCR----------SLRDLAIIDILASTGMRVGELVKL 194

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
             ++I  +     + GKGDK R V    +  K  L  Y     D N  + + L +    K
Sbjct: 195 NIEDIDFEGRECVVFGKGDKERKV-YFDARTKIHLHNYLKTRDDDNSALFVSLLKP--HK 251

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L     +  +RQL R L +      H  R + AT  +  G  +  +Q +LGH ++ TT 
Sbjct: 252 RLQISGVEIMLRQLGRKLNIT-KVHPHKFRRTLATKAIDKGMPIEQVQQLLGHQKIDTTL 310

Query: 297 IYTNVNSKN 305
            Y  V+  N
Sbjct: 311 QYAMVSQNN 319


>gi|148543941|ref|YP_001271311.1| phage integrase family protein [Lactobacillus reuteri DSM 20016]
 gi|184153337|ref|YP_001841678.1| phage integrase [Lactobacillus reuteri JCM 1112]
 gi|227364850|ref|ZP_03848897.1| phage integrase family protein [Lactobacillus reuteri MM2-3]
 gi|325682524|ref|ZP_08162041.1| phage integrase family site-specific recombinase [Lactobacillus
           reuteri MM4-1A]
 gi|148530975|gb|ABQ82974.1| phage integrase family protein [Lactobacillus reuteri DSM 20016]
 gi|183224681|dbj|BAG25198.1| phage integrase [Lactobacillus reuteri JCM 1112]
 gi|227070113|gb|EEI08489.1| phage integrase family protein [Lactobacillus reuteri MM2-3]
 gi|324978363|gb|EGC15313.1| phage integrase family site-specific recombinase [Lactobacillus
           reuteri MM4-1A]
          Length = 386

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           GKP+ P   + Y   + + LG P +   H+LRH+ AT LL  G   + +Q  LGH +++T
Sbjct: 303 GKPVTPNSIKYYASTVTKELGFPFN--FHSLRHTHATMLLEAGASAKEVQVRLGHNKIAT 360

Query: 295 T 295
           T
Sbjct: 361 T 361


>gi|188495542|ref|ZP_03002812.1| Int [Escherichia coli 53638]
 gi|188490741|gb|EDU65844.1| Int [Escherichia coli 53638]
          Length = 327

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 243 FQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           ++++   LRR    +P +   H LRH+FA+H + NGG++ ++Q ILGH  +  T  Y ++
Sbjct: 247 YEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 306


>gi|116625838|ref|YP_827994.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229000|gb|ABJ87709.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 311

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 5/154 (3%)

Query: 155 RNSAILYLLYGCGLRISE--ALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSVRKAIL 211
           R+ A+L L+ GCGLR  E  AL L      +D S +  +  K   IR VP+   V+ A+ 
Sbjct: 146 RDRAMLALMLGCGLRRGEIAALRLDHLQQREDHSVIADLVDKAAHIRTVPVPGWVKAAVD 205

Query: 212 EYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           E+       D  L   +     + G  +   V    ++      G+    + H  R + A
Sbjct: 206 EWVTSAAITDGRLFRCVSRKESVWGSGITEKVIWHVVKAAAAAAGIA-KLSLHDCRRTCA 264

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
               + GG+L  IQ +LGH  + TT+ Y     +
Sbjct: 265 RLCHAAGGELEQIQFLLGHVSVETTERYLGCKQR 298


>gi|224027002|ref|ZP_03645368.1| hypothetical protein BACCOPRO_03761 [Bacteroides coprophilus DSM
           18228]
 gi|224020238|gb|EEF78236.1| hypothetical protein BACCOPRO_03761 [Bacteroides coprophilus DSM
           18228]
          Length = 409

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 70/152 (46%), Gaps = 24/152 (15%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQST---LRIQGKGDKIRI-VPLLPSVRKAILEYYD 215
            L+ C  G   ++ +S+T +N+  D+     L+   K +K+   V LLP    A+LE Y 
Sbjct: 253 FLFACYTGTAYADTVSITEENLFRDEEGSLWLKYHRKKNKMLARVKLLPEAL-AMLEKYK 311

Query: 216 LCPFDLNLNIQLPL--FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
               D      LP   FR +RG           ++ LR   G+ +    H  RHSFA+ +
Sbjct: 312 ----DPTRPTLLPPQEFRVLRGN----------MKSLRVLSGVSMDLVYHVGRHSFASLV 357

Query: 274 -LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            L  G  + +I  +LGH  + TTQIY  V  K
Sbjct: 358 TLEEGVPIETISRMLGHNNIQTTQIYARVTPK 389


>gi|164521191|gb|ABY60457.1| phage integrase [Burkholderia andropogonis]
          Length = 290

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 103/266 (38%), Gaps = 35/266 (13%)

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           +   R  +  E R F        +  RS   SLS + +  ++L +++    +       L
Sbjct: 12  VSPPRPRTSPEWRPFAGG-----LSARSAAHSLSVLGALFRWLIEQRYVFANPFAG---L 63

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHET-----KWIDARNSAILYLL---YGCGLRIS 171
           K   + P  L+  +A +  +  L+ T  +       W  A    + ++L   Y  GLR S
Sbjct: 64  KVRGAAPALLDTSRAFSEGEWALVRTVADGLEWSYGWEPAAAQRLRFVLDFAYATGLRAS 123

Query: 172 EALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNI 225
           E +  T   I     D+  L + GKG +   V L P  R A+  Y     L         
Sbjct: 124 ELVHATLGAIKIDASDERWLHVIGKGARASRVTLPPLARVALDRYLMQRGLPTTPAKWEP 183

Query: 226 QLPLFRGIRGKP-LNPG----VFQRYIRQLRRYLGLPLSTTA--------HTLRHSFATH 272
             PL   + G+  +N      V +R+       +G      A        H +RH+ ATH
Sbjct: 184 VTPLVASLAGEAGINRARLWVVMKRFFATAAEVIGEGSPAVAETLRRASPHWMRHTHATH 243

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIY 298
            L  G +L +++  L H  LSTT +Y
Sbjct: 244 ALQGGAELTAVRDNLRHASLSTTSMY 269


>gi|16132134|ref|NP_418733.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli str. K-12 substr. MG1655]
 gi|24115412|ref|NP_709922.1| tyrosine recombinase [Shigella flexneri 2a str. 301]
 gi|26251200|ref|NP_757240.1| tyrosine recombinase [Escherichia coli CFT073]
 gi|30065432|ref|NP_839603.1| tyrosine recombinase [Shigella flexneri 2a str. 2457T]
 gi|89111025|ref|AP_004805.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli str. K-12 substr. W3110]
 gi|157163757|ref|YP_001461075.1| tyrosine recombinase [Escherichia coli HS]
 gi|170682577|ref|YP_001746750.1| tyrosine recombinase [Escherichia coli SMS-3-5]
 gi|191167181|ref|ZP_03029001.1| type 1 fimbriae regulatory protein FimE [Escherichia coli B7A]
 gi|193063696|ref|ZP_03044784.1| type 1 fimbriae regulatory protein FimE [Escherichia coli E22]
 gi|193070101|ref|ZP_03051047.1| type 1 fimbriae regulatory protein FimE [Escherichia coli E110019]
 gi|194426551|ref|ZP_03059105.1| type 1 fimbriae regulatory protein FimE [Escherichia coli B171]
 gi|209921777|ref|YP_002295861.1| tyrosine recombinase [Escherichia coli SE11]
 gi|218556844|ref|YP_002389758.1| tyrosine recombinase [Escherichia coli IAI1]
 gi|218561489|ref|YP_002394402.1| tyrosine recombinase [Escherichia coli S88]
 gi|218703011|ref|YP_002410640.1| tyrosine recombinase [Escherichia coli IAI39]
 gi|218707980|ref|YP_002415499.1| tyrosine recombinase [Escherichia coli UMN026]
 gi|237704054|ref|ZP_04534535.1| tyrosine recombinase [Escherichia sp. 3_2_53FAA]
 gi|253775069|ref|YP_003037900.1| tyrosine recombinase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254164234|ref|YP_003047344.1| tyrosine recombinase [Escherichia coli B str. REL606]
 gi|256019941|ref|ZP_05433806.1| tyrosine recombinase [Shigella sp. D9]
 gi|256025242|ref|ZP_05439107.1| tyrosine recombinase [Escherichia sp. 4_1_40B]
 gi|260847129|ref|YP_003224907.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O103:H2 str. 12009]
 gi|260858481|ref|YP_003232372.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O26:H11 str. 11368]
 gi|260871033|ref|YP_003237435.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O111:H- str. 11128]
 gi|293402970|ref|ZP_06647067.1| tyrosine recombinase [Escherichia coli FVEC1412]
 gi|293407997|ref|ZP_06651837.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293417777|ref|ZP_06660399.1| type 1 fimbriae regulatory protein fimE [Escherichia coli B185]
 gi|293476576|ref|ZP_06664984.1| type 1 fimbriae regulatory protein fimE [Escherichia coli B088]
 gi|298378498|ref|ZP_06988382.1| type 1 fimbriae regulatory protein fimE [Escherichia coli FVEC1302]
 gi|301019652|ref|ZP_07183809.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 196-1]
 gi|306815503|ref|ZP_07449652.1| tyrosine recombinase [Escherichia coli NC101]
 gi|307312916|ref|ZP_07592544.1| integrase family protein [Escherichia coli W]
 gi|312966032|ref|ZP_07780258.1| phage integrase family protein [Escherichia coli 2362-75]
 gi|312969991|ref|ZP_07784173.1| phage integrase family protein [Escherichia coli 1827-70]
 gi|331650434|ref|ZP_08351506.1| type 1 fimbriae regulatory protein FimE [Escherichia coli M605]
 gi|331650787|ref|ZP_08351815.1| type 1 fimbriae regulatory protein FimE [Escherichia coli M718]
 gi|331660932|ref|ZP_08361864.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA206]
 gi|331665963|ref|ZP_08366857.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA143]
 gi|331666126|ref|ZP_08367007.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA271]
 gi|331671426|ref|ZP_08372224.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA280]
 gi|331680416|ref|ZP_08381075.1| type 1 fimbriae regulatory protein FimE [Escherichia coli H591]
 gi|332281083|ref|ZP_08393496.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Shigella sp. D9]
 gi|83286952|sp|P0ADH8|FIME_ECOL6 RecName: Full=Type 1 fimbriae regulatory protein fimE
 gi|83286953|sp|P0ADH7|FIME_ECOLI RecName: Full=Type 1 fimbriae regulatory protein fimE
 gi|83286954|sp|P0ADH9|FIME_SHIFL RecName: Full=Type 1 fimbriae regulatory protein fimE
 gi|26111632|gb|AAN83814.1|AE016771_325 Type 1 fimbriae Regulatory protein fimE [Escherichia coli CFT073]
 gi|537154|gb|AAA97209.1| recombinase involved in phase variation [Escherichia coli str. K-12
           substr. MG1655]
 gi|581086|emb|CAA27561.1| fimE [Escherichia coli]
 gi|1790768|gb|AAC77269.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli str. K-12 substr. MG1655]
 gi|24054724|gb|AAN45629.1| recombinase; regulator for fimA [Shigella flexneri 2a str. 301]
 gi|30043696|gb|AAP19415.1| recombinase; regulator for fimA [Shigella flexneri 2a str. 2457T]
 gi|85677056|dbj|BAE78306.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli str. K12 substr. W3110]
 gi|157069437|gb|ABV08692.1| type 1 fimbriae regulatory protein FimE [Escherichia coli HS]
 gi|170520295|gb|ACB18473.1| type 1 fimbriae regulatory protein FimE [Escherichia coli SMS-3-5]
 gi|190902838|gb|EDV62567.1| type 1 fimbriae regulatory protein FimE [Escherichia coli B7A]
 gi|192930683|gb|EDV83289.1| type 1 fimbriae regulatory protein FimE [Escherichia coli E22]
 gi|192956554|gb|EDV87011.1| type 1 fimbriae regulatory protein FimE [Escherichia coli E110019]
 gi|194415290|gb|EDX31558.1| type 1 fimbriae regulatory protein FimE [Escherichia coli B171]
 gi|209915036|dbj|BAG80110.1| type-1 fimbriae regulator FimE [Escherichia coli SE11]
 gi|218363613|emb|CAR01270.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli IAI1]
 gi|218368258|emb|CAR06075.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli S88]
 gi|218372997|emb|CAR20882.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli IAI39]
 gi|218435077|emb|CAR16031.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli UMN026]
 gi|226901966|gb|EEH88225.1| tyrosine recombinase [Escherichia sp. 3_2_53FAA]
 gi|242379830|emb|CAQ34661.1| regulator for fimA [Escherichia coli BL21(DE3)]
 gi|253326113|gb|ACT30715.1| integrase family protein [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253976137|gb|ACT41808.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli B str. REL606]
 gi|253980293|gb|ACT45963.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli BL21(DE3)]
 gi|257757130|dbj|BAI28632.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O26:H11 str. 11368]
 gi|257762276|dbj|BAI33773.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O103:H2 str. 12009]
 gi|257767389|dbj|BAI38884.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O111:H- str. 11128]
 gi|281181464|dbj|BAI57794.1| type 1 fimbriae regulator [Escherichia coli SE15]
 gi|281603521|gb|ADA76505.1| Type 1 fimbriae regulatory protein fimE [Shigella flexneri 2002017]
 gi|291321029|gb|EFE60471.1| type 1 fimbriae regulatory protein fimE [Escherichia coli B088]
 gi|291429885|gb|EFF02899.1| tyrosine recombinase [Escherichia coli FVEC1412]
 gi|291430495|gb|EFF03493.1| type 1 fimbriae regulatory protein fimE [Escherichia coli B185]
 gi|291472248|gb|EFF14730.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298280832|gb|EFI22333.1| type 1 fimbriae regulatory protein fimE [Escherichia coli FVEC1302]
 gi|299882113|gb|EFI90324.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 196-1]
 gi|305851165|gb|EFM51620.1| tyrosine recombinase [Escherichia coli NC101]
 gi|306907084|gb|EFN37591.1| integrase family protein [Escherichia coli W]
 gi|310337489|gb|EFQ02600.1| phage integrase family protein [Escherichia coli 1827-70]
 gi|312289275|gb|EFR17169.1| phage integrase family protein [Escherichia coli 2362-75]
 gi|313649987|gb|EFS14405.1| phage integrase family protein [Shigella flexneri 2a str. 2457T]
 gi|315063615|gb|ADT77942.1| tyrosine recombinase/inversion of on/off regulator of FimA
           [Escherichia coli W]
 gi|320200578|gb|EFW75164.1| type 1 fimbriae regulatory protein FimE [Escherichia coli EC4100B]
 gi|323157662|gb|EFZ43768.1| phage integrase family protein [Escherichia coli EPECa14]
 gi|323163313|gb|EFZ49141.1| phage integrase family protein [Escherichia coli E128010]
 gi|323182028|gb|EFZ67439.1| phage integrase family protein [Escherichia coli 1357]
 gi|323189837|gb|EFZ75115.1| phage integrase family protein [Escherichia coli RN587/1]
 gi|323380304|gb|ADX52572.1| integrase family protein [Escherichia coli KO11]
 gi|323935245|gb|EGB31598.1| phage integrase [Escherichia coli E1520]
 gi|323939682|gb|EGB35886.1| phage integrase [Escherichia coli E482]
 gi|323945829|gb|EGB41874.1| phage integrase [Escherichia coli H120]
 gi|323950597|gb|EGB46475.1| phage integrase [Escherichia coli H252]
 gi|323955384|gb|EGB51154.1| phage integrase [Escherichia coli H263]
 gi|323960179|gb|EGB55822.1| phage integrase [Escherichia coli H489]
 gi|323975621|gb|EGB70718.1| phage integrase [Escherichia coli TW10509]
 gi|324118516|gb|EGC12409.1| phage integrase [Escherichia coli E1167]
 gi|331040828|gb|EGI12986.1| type 1 fimbriae regulatory protein FimE [Escherichia coli M605]
 gi|331051241|gb|EGI23290.1| type 1 fimbriae regulatory protein FimE [Escherichia coli M718]
 gi|331051974|gb|EGI24013.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA206]
 gi|331057014|gb|EGI29008.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA143]
 gi|331066337|gb|EGI38214.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA271]
 gi|331071271|gb|EGI42628.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA280]
 gi|331071879|gb|EGI43215.1| type 1 fimbriae regulatory protein FimE [Escherichia coli H591]
 gi|332103435|gb|EGJ06781.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Shigella sp. D9]
 gi|332750457|gb|EGJ80867.1| phage integrase family protein [Shigella flexneri 2747-71]
 gi|332752103|gb|EGJ82495.1| phage integrase family protein [Shigella flexneri K-671]
 gi|332764696|gb|EGJ94925.1| phage integrase family protein [Shigella flexneri 2930-71]
 gi|333010405|gb|EGK29838.1| phage integrase family protein [Shigella flexneri VA-6]
 gi|333011280|gb|EGK30694.1| phage integrase family protein [Shigella flexneri K-272]
 gi|333012078|gb|EGK31461.1| phage integrase family protein [Shigella flexneri K-304]
 gi|333012176|gb|EGK31558.1| phage integrase family protein [Shigella flexneri K-227]
          Length = 198

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 66/158 (41%), Gaps = 2/158 (1%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILE 212
           AR+  ++ L Y  G+RISE L L  Q++  ++  + I+   +    V PL    R+A+  
Sbjct: 26  ARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVER 85

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +          +    +F   RG  L+     R IR      G    T  H LRH+    
Sbjct: 86  WTQERANWKGADRTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYE 145

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-GGDW 309
           L   G D R IQ  LGH  +  T  YT  N+    G W
Sbjct: 146 LAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLW 183


>gi|330814554|ref|YP_004362729.1| phage integrase family protein [Burkholderia gladioli BSR3]
 gi|327374546|gb|AEA65897.1| phage integrase family protein [Burkholderia gladioli BSR3]
          Length = 559

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 124/314 (39%), Gaps = 62/314 (19%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +ERG  LS LT +    D   +  FL   T     +   R  S  E R F     T  + 
Sbjct: 248 VERGKALSSLTSE----DATAYRAFLRHPTRRARWVAPARPRSSPEWRPF-----TGALS 298

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSL--PRALNEKQA---LTL 137
             S+  +LS + +  ++L +++    ++   L +R  +++  L   RA    +     T+
Sbjct: 299 PDSIAYALSVLSAMFRWLIEQRYVLANSFAGLKVRGAQRNGELDISRAFTAGEWELIRTI 358

Query: 138 VDNVLLHTSHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNI---MDDQSTLRIQ 191
            D   L  SH   W       + ++L   Y  GLR  E + +T   I      +  L + 
Sbjct: 359 ADG--LEWSH--GWTVPAAQRLRFVLDFGYATGLRAGELVGVTLGGIETGARGERWLHLT 414

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP---------GV 242
           GKG K   V L P    A+ +Y         +   LP+    R +P  P         G+
Sbjct: 415 GKGAKAGKVVLPPLATHALDQYL--------VQRGLPVT-SARWQPDTPLLGHLDAPGGI 465

Query: 243 FQRYIRQ-LRRYLGLPLST---------------TAHTLRHSFATHLLSNGGDLRSIQSI 286
               +R+ LRR+                      T H +RH+ ATH L+NG  L +++  
Sbjct: 466 TTPRLREVLRRFFHAAADAIEVDHPALADKLRRATPHWMRHTHATHALANGATLTTVRDN 525

Query: 287 LGHFRLSTTQIYTN 300
           L H  ++TT IY +
Sbjct: 526 LRHASITTTSIYLD 539


>gi|301311429|ref|ZP_07217356.1| integrase [Bacteroides sp. 20_3]
 gi|300830515|gb|EFK61158.1| integrase [Bacteroides sp. 20_3]
          Length = 401

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 19/162 (11%)

Query: 162 LLYGC--GLRISEALSLTP-QNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYD 215
            ++ C  G+  ++   LT  Q + D +S+  I     K +    +PLLP   + + +Y  
Sbjct: 249 FVFSCFTGISYADMCKLTKDQIVFDSKSSGYIHFYRTKTNHPAFIPLLPQSMEILDKY-- 306

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA-THLL 274
                +N N    +F  +  +  N      Y+++L    G+    T H  RHSFA T  L
Sbjct: 307 -----INQNNSGKIFPMLSNQKTNA-----YLKELADICGIKKKLTYHVARHSFAVTICL 356

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            NG  + ++  ILGH  L  TQ Y  +  K   + M  + D+
Sbjct: 357 ENGIPIETLSKILGHTNLRVTQAYAKITHKKVMNDMQALKDR 398


>gi|299142623|ref|ZP_07035753.1| integrase [Prevotella oris C735]
 gi|298575838|gb|EFI47714.1| integrase [Prevotella oris C735]
          Length = 415

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 23/151 (15%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYY-- 214
            ++ C  GL IS+  +L  +NI+ ++  L I+G+  K +    V +LP    AI+E Y  
Sbjct: 268 FVFSCFSGLAISDVRNLREENIVLEEGELCIKGRRMKTKTPYRVQVLPPA-WAIMERYRG 326

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL- 273
               F  ++     +  G+            YI+   R +G+    T H  RH+FA+ + 
Sbjct: 327 KRAGFVFDVPTSDIILNGMH-----------YIQ---RNIGMETPLTFHMARHTFASLIT 372

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           LS G  + ++  +LGH  L TTQ+Y  V+S+
Sbjct: 373 LSAGVPIETVSRMLGHTNLRTTQVYAAVSSE 403


>gi|238025620|ref|YP_002909852.1| Putative site-specific recombinase [Burkholderia glumae BGR1]
 gi|237880285|gb|ACR32616.1| Putative site-specific recombinase [Burkholderia glumae BGR1]
          Length = 223

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 85/200 (42%), Gaps = 38/200 (19%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------GKG 194
           LL  +  T     R+S +L L   CG+R+SE   +  Q+++     +R +        KG
Sbjct: 15  LLAVTSATSRHPERDSLVLLLGITCGMRVSEIAQIEIQDVLFPSGAIRSEVSLRAAITKG 74

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL--FRGIR------------------ 234
            + R V L      + LE Y        + I+L    +RG+                   
Sbjct: 75  CRQRCVYLTHPKTVSALECYLGHRIAHGIGIELTAEHYRGLAPSSCLVLASKGRKFAMNT 134

Query: 235 -------GKPLNPGV---FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
                  G+P++       Q +I +L R  G+ L  ++H+ R SFA++L+  G D+ ++Q
Sbjct: 135 KRRINEAGEPVDYSACDSLQSHITKLYRDAGI-LGGSSHSGRRSFASNLIEQGHDIETVQ 193

Query: 285 SILGHFRLSTTQIYTNVNSK 304
            +LGH  L     Y +V+ K
Sbjct: 194 QLLGHAELDHVLPYLDVSDK 213


>gi|257064113|ref|YP_003143785.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
 gi|256791766|gb|ACV22436.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
          Length = 451

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           +L    + L    P+    RG+ +N   F+R+ R  R   G       H LRHS AT LL
Sbjct: 310 ELAKLAIKLGDATPVCCSERGEWVNLANFERWWRSFRDDAGFE-GLRFHELRHSQATLLL 368

Query: 275 SNGGDLRSIQSILGH 289
           +NG DL+++Q  +GH
Sbjct: 369 ANGTDLKTVQDRMGH 383


>gi|228477373|ref|ZP_04062009.1| tyrosine recombinase XerC [Streptococcus salivarius SK126]
 gi|228250808|gb|EEK09996.1| tyrosine recombinase XerC [Streptococcus salivarius SK126]
          Length = 356

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 118/284 (41%), Gaps = 45/284 (15%)

Query: 58  ITIQTIRQLSYTEIRAFI----------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI 107
           I I+T+  L+  ++ +F+          +  + Q +   ++ R+LS + S  KYL +   
Sbjct: 66  IDIKTLENLTKKDMESFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVE 125

Query: 108 TTESNILNMRNLKKSNSL--------PRALNEKQALTLVDNVL-----LHTSHETKWID- 153
             +      RN+ K  S          RA N KQ L L D  +     +   +E K  + 
Sbjct: 126 GPDGEPYFYRNVMKKVSTKKKKETLAARAENIKQKLFLGDETMEFLDYVENEYEVKLSNR 185

Query: 154 ---------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
                     R+ AI+ LL   G+R+SEA++L  ++I      + +  KG K   V +  
Sbjct: 186 AKSSFYKNKERDLAIIALLLASGVRLSEAVNLDLKDINLKMMVIDVTRKGGKRDSVNV-A 244

Query: 205 SVRKAILEYYDLCPFD-------LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           S  K  LE Y L   D        ++ + L  +RG+  + ++    ++ + +  +     
Sbjct: 245 SFAKPYLETY-LSIRDKRYKAEKQDVALFLTEYRGVPNR-IDASSIEKMVAKYSQ--DFK 300

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T H LRH+ AT L         +   LGH     T +YT++
Sbjct: 301 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHI 344


>gi|269955405|ref|YP_003325194.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894]
 gi|269304086|gb|ACZ29636.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894]
          Length = 447

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 11/115 (9%)

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK------PLNPGVFQRYIRQLR 251
           R++PL P +  A+ E+  +CP D    +  P  R  RGK      P  P   +     ++
Sbjct: 310 RVIPLTPWMEAALREWQPMCP-DNPWGLVWPAVRLSRGKTTPRVLPQTPNRDREAWEAIQ 368

Query: 252 RYLGLPLSTTA----HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             LG+   +      H  RH+ A  LL  G D   +++I+GH  + T++ Y + N
Sbjct: 369 AALGITHESGRRYLLHEARHTTANLLLEAGVDPEVVKAIMGHSSIVTSRGYMHAN 423


>gi|186472981|ref|YP_001860323.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184195313|gb|ACC73277.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 354

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 128/307 (41%), Gaps = 37/307 (12%)

Query: 7   PEIVSFELL-KERQNWLQN--LEIERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKITIQ 61
           P I   +L  +ERQ+WL +     +  L+    +  S E    Q+ +FL +    +  + 
Sbjct: 14  PAIAEADLFERERQDWLIDPRAAFDAWLAGQHFRNSSAEVYRAQWGLFLEWLQARQKNLV 73

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-----------E 110
           T+   +  E  A +S R+ Q+       R L  I+  L ++++ ++ +           E
Sbjct: 74  TVDMRAIAEFVAGLSIRKPQR------ARYLRLIERVLDHVREIELASTNPARFIAQDGE 127

Query: 111 SNILNMRNLKKSNSLPRALNEKQAL-TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
           +   N R+ + +  L  ++ E+ AL   + + + + S   +W + R+ A++ +  G G++
Sbjct: 128 AEWRNARDNEPTGFL--SVGERSALIDYLFSPVTNLSAAQRWRERRDRALIAVFLGGGIK 185

Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGD----KIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
             EA +L+   +      + I+        + R+ P   SV  A L+          L  
Sbjct: 186 TGEARTLSVSCMTSGSPWVVIEAANPLFTRRTRLAPFAVSVLGAWLDERKQA----ELPG 241

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA----HTLRHSFATHLLSNGGDLR 281
           +L       G+P++     R +  L    G   S  A    HTLR+SFA  L   G ++ 
Sbjct: 242 ELVFPASPSGRPMHKATMLRAVDALVDAAGFGQSREARASPHTLRNSFAADLFERGVEVE 301

Query: 282 SIQSILG 288
            +   LG
Sbjct: 302 VVGQWLG 308


>gi|5824355|emb|CAB54522.1| Int protein [Enterobacteria phage WPhi]
          Length = 326

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 243 FQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           ++++   LRR    +P +   H LRH+FA+H + NGG++ ++Q ILGH  +  T  Y ++
Sbjct: 247 YEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 306


>gi|323438828|gb|EGA96566.1| hypothetical protein SAO11_2347 [Staphylococcus aureus O11]
          Length = 409

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 84/208 (40%), Gaps = 32/208 (15%)

Query: 132 KQALTLVDNVLLHTSHETKWIDARN----SAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           K+ L   D ++ H  H T+    RN     A++      G+RI E L++   NI  +  T
Sbjct: 192 KELLQCFDYLIKHKRHATR---KRNYEMVKALVEFQINNGMRIGELLAIKTDNINIENKT 248

Query: 188 LRIQGKGDKI--------------------RIVPLLPS----VRKAILEYYDLCPFDLNL 223
           L I G  + +                    R + L       ++K +LE      ++   
Sbjct: 249 LEIDGTINWVTDTETGAFGVKETTKTSKSYRTIGLTTQSINLLKKLMLENKKENQWNAKF 308

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             +  +F    G P++       I++      +    T HTLRH+  + L   G +L++I
Sbjct: 309 IDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQLGINLKAI 368

Query: 284 QSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           Q+ +GH    TT  IYT+V  K   D M
Sbjct: 369 QARVGHSDYKTTLDIYTHVTDKMAQDMM 396


>gi|168187849|ref|ZP_02622484.1| phage integrase [Clostridium botulinum C str. Eklund]
 gi|169294306|gb|EDS76439.1| phage integrase [Clostridium botulinum C str. Eklund]
          Length = 397

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 9/112 (8%)

Query: 197 IRIVPLLPSVRKAILEYYDLCPF------DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           IR VP+  ++ + + EY            DL  N    +F    G PL+P    R  + +
Sbjct: 265 IRTVPIPTNIMEKLKEYKQKHSVIKKENEDLYNNTDY-IFCDKLGNPLDPKRIPRNFKSV 323

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
            +  GL      H+LRH++AT L   G  ++++Q+++GH  ++TT  IYT+V
Sbjct: 324 LKKAGLK-DIKFHSLRHTYATRLFEVGVPIKTVQTLMGHSDITTTMNIYTHV 374


>gi|288929355|ref|ZP_06423200.1| site-specific recombinase, phage integrase family [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288329457|gb|EFC68043.1| site-specific recombinase, phage integrase family [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 308

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 25/156 (16%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLR----------IQGKGDKIRIVPLLPSVRKA 209
           +Y+    GLRI E   L   +I  D  T+           I+G+     +V   P  + +
Sbjct: 133 IYISLTTGLRIGEICGLMWADINTDTGTITVNRTIERIYIIEGERKHTELVINTPKTKNS 192

Query: 210 ILEYYDLCPFDLNLNIQL-PLFRGIRG---------KPLNPGVFQRYIRQLRRYLGLPLS 259
             E     P +  L   + PL + +           KP  P  ++ Y  +L  +L +P  
Sbjct: 193 CREI----PMNKELLAMVKPLKKVVNASFYVLTNEEKPTEPRTYRNYFHRLMGHLDIP-R 247

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
              H LRHSFAT  + +  D +++  +LGH  ++TT
Sbjct: 248 LKYHGLRHSFATRCIESNCDYKTVSVLLGHANITTT 283


>gi|167838354|ref|ZP_02465213.1| putative bacteriophage integrase [Burkholderia thailandensis
           MSMB43]
          Length = 284

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 107/251 (42%), Gaps = 17/251 (6%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE-SNILNMRNL 119
           + +R+L   ++R ++S R    + + ++KR L  + + + +++      E +N +    L
Sbjct: 36  RDLRKLKRGDVRRYVSARLADGVCESTVKRELRLLSAAINFVRTEHDYPELANPVQSLGL 95

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
               S  R ++  +A+ L+    L      +    RN   L L  GC  R +E L+L   
Sbjct: 96  DGGESRVRWISRSEAVELI----LAAGAAARQPHLRNFVRLALSTGC--RKNELLALEWH 149

Query: 180 NIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRG 235
            +  ++S  R++    K  K R+VPL      A+ +  D +               G R 
Sbjct: 150 RVDFERSHFRLECEHTKNGKRRLVPLNSGALSALRDQRDWVARHCAGSEWVFASSSGRRV 209

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             L  G      R      G+      H LRH+FA+ L+  G  L  ++ +LGH  ++ T
Sbjct: 210 SNLQKGFVAACARA-----GIE-DFRIHDLRHTFASWLVMEGVSLYVVKDLLGHSSITVT 263

Query: 296 QIYTNVNSKNG 306
           + Y +++  +G
Sbjct: 264 ERYAHLSPDHG 274


>gi|37515379|emb|CAE48333.1| IntI1 DNA integrase [Pseudomonas aeruginosa]
 gi|46092528|dbj|BAD14384.1| integrase [Pseudomonas aeruginosa]
          Length = 296

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 37/158 (23%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207
           LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R         
Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198

Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                                  +A   +     F  + +   P    +R   +    FQ
Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
           R  ++     G+    T HTLRHSFAT LL +G D+R+
Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRT 296


>gi|221141217|ref|ZP_03565710.1| pathogenicity island protein, integrase [Staphylococcus aureus
           subsp. aureus str. JKD6009]
 gi|269940391|emb|CBI48768.1| integrase [Staphylococcus aureus subsp. aureus TW20]
 gi|302750718|gb|ADL64895.1| pathogenicity island protein, integrase [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|329313555|gb|AEB87968.1| Pathogenicity island protein, integrase [Staphylococcus aureus
           subsp. aureus T0131]
          Length = 406

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 30/171 (17%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGK---------GDKIRIVPLLPS------------ 205
           G+RI E L++  ++I  D  +L I G          G  ++      S            
Sbjct: 230 GMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSC 289

Query: 206 --VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
             ++KAILE      ++   LN N    +F   +G P+    F + +R+  + +G+    
Sbjct: 290 EILKKAILENKKDSKWNDGYLNRNF---VFTNHKGNPMQTERFNKILREAAKDVGIDKEV 346

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           ++H LRHS  + L   G  L++I   +GH    TT  IY++V  +   D M
Sbjct: 347 SSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMM 397


>gi|94442228|dbj|BAE93613.1| integron integrase [uncultured bacterium]
          Length = 211

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 48/192 (25%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K+   LP  L + +  TL++N           +   N  I  LLYG G+R  E L L   
Sbjct: 31  KQPRHLPVVLTQAEVGTLLEN-----------MKGVNGLIARLLYGTGMRKMECLRLRIM 79

Query: 180 NIMDDQSTLRIQ-GKG--DKIRIVP--LLPSVRKAILEYYDLCPFDLNLN---IQLPLF- 230
           ++  D S + ++ GKG  D+I ++P  L+ S+R  +     L  +D++     ++LP   
Sbjct: 80  DVDFDYSQIHVRSGKGGKDRIALLPDCLVASLRSQLEHTEKLHKYDIDEGYGEVELPFAL 139

Query: 231 --------RGIRGKPLNP----------GVFQRY----------IRQLRRYLGLPLSTTA 262
                   R  + + + P          GV +R+          IRQ   +  +    + 
Sbjct: 140 ERKYPNAGREWKWQYVFPSTKRSVDKRTGVIRRHHWHDTNVSRAIRQSVCFSRISKHVSV 199

Query: 263 HTLRHSFATHLL 274
           HTLRHSFATHLL
Sbjct: 200 HTLRHSFATHLL 211


>gi|262039474|ref|ZP_06012777.1| site-specific recombinase, phage integrase family [Leptotrichia
           goodfellowii F0264]
 gi|261746503|gb|EEY34039.1| site-specific recombinase, phage integrase family [Leptotrichia
           goodfellowii F0264]
          Length = 323

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 79/190 (41%), Gaps = 43/190 (22%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK-----------GDKIRIVPLLPS 205
           S  + L    GLRI E   L  ++I D Q+ + I  K           G K  I+  +P 
Sbjct: 145 SVGILLAMSIGLRIGELCGLKWKDI-DLQNEILIVNKTLQRIYFRVKKGGKSEIIISVPK 203

Query: 206 VRKAILEYYDLCPFDLNLNIQLPL---------FRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            + +    Y + P   NL   L +         F     K + P  ++RY  ++   L +
Sbjct: 204 SKNS----YRIIPLSRNLVNFLKILQIDDKSNYFLSNNEKYIEPKTYRRYYYKILEKLKI 259

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H+LRH+FAT  + +G D +++  ILGH  ++TT               +E+Y  
Sbjct: 260 R-KLKFHSLRHTFATTAIESGIDYKTVSEILGHASVNTT---------------LELY-- 301

Query: 317 THPSITQKDK 326
           THP I  K K
Sbjct: 302 THPKIEHKKK 311


>gi|255014895|ref|ZP_05287021.1| integrase [Bacteroides sp. 2_1_7]
          Length = 311

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 33/56 (58%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           F R +R L R  G+ L  T++T+RHSFA+ L      +  I  +LGH  + TTQIY
Sbjct: 228 FNRDLRSLARSTGVTLPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIY 283


>gi|71274497|ref|ZP_00650785.1| Phage integrase [Xylella fastidiosa Dixon]
 gi|71900326|ref|ZP_00682461.1| Phage integrase [Xylella fastidiosa Ann-1]
 gi|71164229|gb|EAO13943.1| Phage integrase [Xylella fastidiosa Dixon]
 gi|71729901|gb|EAO31997.1| Phage integrase [Xylella fastidiosa Ann-1]
          Length = 387

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 115/258 (44%), Gaps = 35/258 (13%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRS---LKRSLSGIKSFL-KYLKKRKITTESNILNMR 117
           T+ +++    R FI   +T     RS   +KR L+  K+ L +  K+ +IT+   I+  +
Sbjct: 107 TVSEITPPRQREFIKWLQTGSDTPRSDGYVKRILTVGKAALNRAYKEGEITSVPYIIPGK 166

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           +    + +   L+ +++  L +   L   HE  +        L L YG   R    L L 
Sbjct: 167 DAPPRDQV---LSLQESAALWEAATL--PHERMY--------LALAYGTLARPEAILGLR 213

Query: 178 PQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
            +   D Q  L  Q   G+    +  P++P     I ++  L P+ L+++   PL     
Sbjct: 214 -REFADIQRRLLTQNPPGRKQTKKFRPVVP-----ICDF--LLPWILSVD-SGPLVH-WH 263

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           GKP+    F+   R LR + GLP  T    +RH+ AT L S G   + IQ +LGH     
Sbjct: 264 GKPI--ASFKTAWRALRTHAGLPKDTVPKVIRHTMATELRSAGVSAQDIQGMLGHRAYGG 321

Query: 295 TQIYTNVNSKNGGDWMME 312
           T   T+V +K   D+M +
Sbjct: 322 T---TDVYAKYRPDYMAD 336


>gi|329667143|gb|AEB93091.1| putative prophage integrase [Lactobacillus johnsonii DPC 6026]
          Length = 391

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 40/182 (21%)

Query: 162 LLYGCGLRISEALSLTPQNI----------------MDDQSTLRIQGKGDKIRIVPLLPS 205
           LL   GLR SEAL+LT Q+I                +D+++ ++        RI+P+  S
Sbjct: 205 LLSATGLRKSEALALTWQDIDLKAGTLSVNKTLAYGLDNKTIIQPPKSPKSKRILPISDS 264

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR--------RY---- 253
           +++ +++Y           I   LF  I+G  L      ++++ +         +Y    
Sbjct: 265 LKEVLIDYKQKQKI-----ISNKLFHTIKGTYLKMSKPDQWLKSIYAKDHEEKVKYAKTH 319

Query: 254 -LGLPLST----TAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTT-QIYTNVNSKNG 306
            L  P       T H  RH+FAT L++      +++Q +LGH  +  T  IYT+VN+KN 
Sbjct: 320 NLKEPQPDLRHITVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQMTLDIYTHVNNKNK 379

Query: 307 GD 308
            D
Sbjct: 380 ED 381


>gi|323442575|gb|EGB00203.1| hypothetical protein SAO46_1495 [Staphylococcus aureus O46]
          Length = 409

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 84/208 (40%), Gaps = 32/208 (15%)

Query: 132 KQALTLVDNVLLHTSHETKWIDARN----SAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           K+ L   D ++ H  H T+    RN     A++      G+RI E L++   NI  +  T
Sbjct: 192 KELLQCFDYLIKHKRHATR---KRNYEMVKALVEFQINNGMRIGELLAIKTDNINIENKT 248

Query: 188 LRIQGKGDKI--------------------RIVPLLPS----VRKAILEYYDLCPFDLNL 223
           L I G  + +                    R + L       ++K +LE      ++   
Sbjct: 249 LEIDGTINWVTDTETGAFGVKETTKTSKSYRTIGLTTQSINLLKKLMLENKKENQWNAKF 308

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             +  +F    G P++       I++      +    T HTLRH+  + L   G +L++I
Sbjct: 309 IDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQLGINLKAI 368

Query: 284 QSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           Q+ +GH    TT  IYT+V  K   D M
Sbjct: 369 QARVGHSDYKTTLDIYTHVTDKMAQDMM 396


>gi|253689521|ref|YP_003018711.1| integrase family protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756099|gb|ACT14175.1| integrase family protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 352

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 23/143 (16%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I+ +    G R SEA  LT   +   + T   + KG K R VP+   +   + E      
Sbjct: 201 IVKVCLATGARWSEAEGLTRSQLSPYKLTF-FKTKGKKNRTVPIPRWLHDELSE------ 253

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR-RYLGLPLSTTAHTLRHSFATHLLSNG 277
                         ++GK   P  +Q +++ L    + L      H LRH+FA+H + NG
Sbjct: 254 --------------LQGKMFQP-CYQDFVKMLALTNIELIEGQNTHVLRHTFASHFMMNG 298

Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300
           G++  +Q ILGH  +  T  Y +
Sbjct: 299 GNILVLQRILGHANIRETMRYAH 321


>gi|229492422|ref|ZP_04386226.1| site-specific recombinase, phage integrase family protein
           [Rhodococcus erythropolis SK121]
 gi|229320651|gb|EEN86468.1| site-specific recombinase, phage integrase family protein
           [Rhodococcus erythropolis SK121]
          Length = 611

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 121 KSNSLPRALNEKQA---LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           K   LPR L++  A   LT   N+           D      + +L   G+R  E L LT
Sbjct: 325 KDKPLPRFLDDGAAAKFLTAARNL----------PDEFGRLAIEMLSRTGMRKGELLDLT 374

Query: 178 PQNIMDDQST--LRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
             +++   S   LRI  GK    R VPL P ++  I  + +  P D   +   PL    R
Sbjct: 375 IDSVVQIGSAYWLRIPVGKLHNDRYVPLHPQLKTMIDTWLEHRP-DWQDS---PLLFTDR 430

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G+P+      + ++      G+      H LRH+ AT  ++ G  L +I ++LGH  +  
Sbjct: 431 GRPIPGTRIDKAVQSAAAAAGIG-HVHPHQLRHTLATQAINRGMSLEAIAALLGHKTMEM 489

Query: 295 TQIYTNVNSKNGGD 308
           T +Y  +  +   D
Sbjct: 490 TMVYARIADRTVAD 503


>gi|154501018|ref|ZP_02039056.1| hypothetical protein BACCAP_04705 [Bacteroides capillosus ATCC
           29799]
 gi|150270042|gb|EDM97561.1| hypothetical protein BACCAP_04705 [Bacteroides capillosus ATCC
           29799]
          Length = 381

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 17/156 (10%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR--------KAILEY 213
           LL G GLR+ E L+L P++I +D S + +      I++V   P++         + +   
Sbjct: 201 LLLGSGLRVQELLALRPEDIAEDGSEICVN---KAIKMVDGKPTIGPPKSKRSCRTVPIP 257

Query: 214 YDLCPFDLNLNIQLP---LFRGIRGKPL-NPGVFQ-RYIRQLRRYLGLPLSTTAHTLRHS 268
            D  P+ + L        ++   R   L + G F+ +Y   L+R  G+      H  RH+
Sbjct: 258 EDYRPYAVYLRTHGGKSYIWTSTRKSLLYSVGTFRNKYYAALKRVPGI-RKLGPHCCRHT 316

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + THL +N   L  I  ++GH  +STT  Y +++S+
Sbjct: 317 YVTHLEANQVPLAEIARLVGHSTVSTTNRYLHISSE 352


>gi|2689564|gb|AAC28969.1| integrase [Staphylococcus aureus]
          Length = 406

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 30/171 (17%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGK---------GDKIRIVPLLPS------------ 205
           G+RI E L++  ++I  D  +L I G          G  ++      S            
Sbjct: 230 GMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSC 289

Query: 206 --VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
             ++KAILE      ++   LN N    +F   +G P+    F + +R+  + +G+    
Sbjct: 290 EILKKAILENKKDSKWNDGYLNRNF---VFTNHKGNPMQTERFNKILREAAKDVGIDKEV 346

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           ++H LRHS  + L   G  L++I   +GH    TT  IY++V  +   D M
Sbjct: 347 SSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMM 397


>gi|94313439|ref|YP_586648.1| Tyrosine-based site-specific recombinase [Cupriavidus metallidurans
           CH34]
 gi|93357291|gb|ABF11379.1| Tyrosine-based site-specific recombinase [Cupriavidus metallidurans
           CH34]
          Length = 559

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 119/311 (38%), Gaps = 58/311 (18%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           IERG  LS LT +    D   +  FL      +  +   R    T+ + F        + 
Sbjct: 251 IERGRPLSSLTTE----DATAYRNFLRQPAPRERWVGPARPRGATDWKPF-----ADGLS 301

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSL--PRALNEKQAL---TL 137
            RS   SL  + +  ++L +++    +    + +R   K+ +L    A +E + L   ++
Sbjct: 302 PRSAAYSLQVLGALFRWLVQQRYVLANPFAGIKVRGGAKTAALDVSHAFSEGEWLLTRSI 361

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD---QSTLRIQGKG 194
            D +      E      R   IL   Y  GLR SE +  T +N+  D      LR+ GKG
Sbjct: 362 ADGLEWSYGWEAS-AAQRLRFILDFTYATGLRASELVGATLRNVETDVHGDHWLRLVGKG 420

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------- 243
            K   V L    R A+  Y         +   LP+ R +   P  P V            
Sbjct: 421 AKAGRVALPTMARNALDRYL--------VERGLPVTRAL-WDPTTPIVGNLGSDEAGGIT 471

Query: 244 -QRYIRQLRRYLGLPLS---------------TTAHTLRHSFATHLLSNGGDLRSIQSIL 287
             R    ++R+ G                    + H LRH+ ATH L+ G +L +++  L
Sbjct: 472 GARLWMVIKRFFGTAADQLEAERPATAEKLRRASPHWLRHTHATHALARGAELTTVRDNL 531

Query: 288 GHFRLSTTQIY 298
            H  +STT +Y
Sbjct: 532 RHASVSTTSLY 542


>gi|301162166|emb|CBW21711.1| putative bacteriophage integrase [Bacteroides fragilis 638R]
          Length = 371

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 70/148 (47%), Gaps = 18/148 (12%)

Query: 163 LYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           L+ C   LRIS+ LSL  ++I+D  +       G K   V ++    KA     D+ P  
Sbjct: 223 LFSCMTSLRISDILSLCWEDIVDYSA-------GGKC--VHIITQKNKA----EDIIPIS 269

Query: 221 ---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
              L L       +G+  K L     Q  +++  R  G+  + T H+ R +FAT   + G
Sbjct: 270 EEALGLIGYSSEKKGLVFKGLMRSWTQIPMKEWIRSAGITKNITFHSYRRTFATLQAAAG 329

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            D+R+IQSI+ H  ++TTQ Y  V   N
Sbjct: 330 TDIRTIQSIMAHKSITTTQRYIKVVDAN 357


>gi|300765731|ref|ZP_07075708.1| integrase [Listeria monocytogenes FSL N1-017]
 gi|300513604|gb|EFK40674.1| integrase [Listeria monocytogenes FSL N1-017]
          Length = 400

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 4/75 (5%)

Query: 229 LFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           LF  + GKP+ P  ++QR+ R L R+  LP+    H LRH+ AT LL+ G D++ IQ  L
Sbjct: 312 LFANMEGKPIRPDSIYQRWKRFLERH-NLPV-IRFHDLRHTSATLLLNKGRDIKIIQERL 369

Query: 288 GH-FRLSTTQIYTNV 301
            H   ++T+ IY +V
Sbjct: 370 RHKSSVTTSNIYAHV 384


>gi|254933695|ref|ZP_05267054.1| phage integrase [Listeria monocytogenes HPB2262]
 gi|293585259|gb|EFF97291.1| phage integrase [Listeria monocytogenes HPB2262]
 gi|332310427|gb|EGJ23522.1| Phage Integrase [Listeria monocytogenes str. Scott A]
          Length = 400

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 4/75 (5%)

Query: 229 LFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           LF  + GKP+ P  ++QR+ R L R+  LP+    H LRH+ AT LL+ G D++ IQ  L
Sbjct: 312 LFANMEGKPIRPDSIYQRWKRFLERH-NLPV-IRFHDLRHTSATLLLNKGRDIKIIQERL 369

Query: 288 GH-FRLSTTQIYTNV 301
            H   ++T+ IY +V
Sbjct: 370 RHKSSVTTSNIYAHV 384


>gi|189182967|ref|YP_001936752.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189183100|ref|YP_001936885.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189183215|ref|YP_001937000.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189179738|dbj|BAG39518.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189179871|dbj|BAG39651.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189179986|dbj|BAG39766.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
          Length = 128

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 38/54 (70%), Gaps = 2/54 (3%)

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           ++R+   +P + T H LR +FAT  ++NG +LR+I  +LGH R+STT +IYT +
Sbjct: 24  KIRKKARIP-NVTIHDLRRTFATWSINNGEELRTIAEMLGHSRISTTAEIYTKI 76


>gi|307313958|ref|ZP_07593572.1| integrase family protein [Escherichia coli W]
 gi|33413728|gb|AAN28248.1| Int [Enterobacteria phage WPhi]
 gi|306906275|gb|EFN36791.1| integrase family protein [Escherichia coli W]
 gi|315063206|gb|ADT77533.1| integrase [Escherichia coli W]
 gi|323380729|gb|ADX52997.1| integrase family protein [Escherichia coli KO11]
          Length = 326

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 243 FQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           ++++   LRR    +P +   H LRH+FA+H + NGG++ ++Q ILGH  +  T  Y ++
Sbjct: 247 YEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 306


>gi|295840983|dbj|BAJ06864.1| integron integrase intI [uncultured bacterium]
          Length = 423

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 117/292 (40%), Gaps = 75/292 (25%)

Query: 29  RGLSKLTLQSYECDTRQFLIF-----LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           R  S  T +SY+    +FL F     LA +TE  IT    R L +  I        ++ +
Sbjct: 161 RHYSFQTEKSYKAWLVRFLKFHAVDNLADFTELHIT----RFLEHLVI--------SRHV 208

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
              +  ++L+ +  F K++  R+ + +   +     KK   LP  L++ +  TL  ++  
Sbjct: 209 SSSTQSQALNALVYFYKHVLDREPSEDIQFVRS---KKPKRLPVVLSQDEISTLFAHI-- 263

Query: 144 HTSHETKWIDARNSAILY---LLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRI 199
                      RN   L    LLYGCG+R+ E + +   ++  D   L I+G KG K R+
Sbjct: 264 -----------RNPTFLLMANLLYGCGMRLMECVRIRILDVDFDYQQLLIRGAKGKKDRV 312

Query: 200 VPL-----------LPSVRK-----------------AILEYYDLCPFDLNLNIQLPLFR 231
            P+           L  VR                  A+   Y     +       P  R
Sbjct: 313 APIPAKLVTTLKSHLTGVRNMHDEDLAQGYGSVYLPGALARKYPNAEKEFRWQFVFPSVR 372

Query: 232 GIRGKPLNPGVFQRYIRQ--LRRYL-------GLPLSTTAHTLRHSFATHLL 274
            +   P +  + + +I Q  L+ +L       G+    + HTLRHSFATHLL
Sbjct: 373 -VSADPRSGEIRRHHIHQTGLQHHLKRAADSSGINKKVSCHTLRHSFATHLL 423


>gi|260450873|gb|ACX41295.1| integrase family protein [Escherichia coli DH1]
 gi|323176201|gb|EFZ61793.1| phage integrase family protein [Escherichia coli 1180]
          Length = 183

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 66/158 (41%), Gaps = 2/158 (1%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILE 212
           AR+  ++ L Y  G+RISE L L  Q++  ++  + I+   +    V PL    R+A+  
Sbjct: 11  ARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVER 70

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +          +    +F   RG  L+     R IR      G    T  H LRH+    
Sbjct: 71  WTQERANWKGADRTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYE 130

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-GGDW 309
           L   G D R IQ  LGH  +  T  YT  N+    G W
Sbjct: 131 LAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLW 168


>gi|237794996|ref|YP_002862548.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
 gi|229261916|gb|ACQ52949.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
          Length = 357

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 79/178 (44%), Gaps = 35/178 (19%)

Query: 152 IDARNSAILYLLYG-CGLRISEALSLTPQNI--------MDDQSTLRIQGK--------G 194
           I+ +   I+ LL   CGLRI E L LT  NI        ++ Q  L   GK         
Sbjct: 188 IENKQYYIMTLLASKCGLRIGEILGLTWDNIDEINKTIIVNKQWKLNKDGKFGFGELKSK 247

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +  R VP      K I  Y       +N++ ++  ++       N       IR+  + L
Sbjct: 248 NSYRKVP----CPKIIFTYLKTYKKVVNIDNRIVNYKNTISTASN-------IRREYKQL 296

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           G  +S   H LRH++AT L+S+  D ++  +ILGH    T +IY++V      D MME
Sbjct: 297 GYDISI--HELRHTYATKLISSRMDFKTAANILGHDIEMTMKIYSHV-----TDEMME 347


>gi|160937006|ref|ZP_02084370.1| hypothetical protein CLOBOL_01895 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440196|gb|EDP17943.1| hypothetical protein CLOBOL_01895 [Clostridium bolteae ATCC
           BAA-613]
          Length = 172

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 34/52 (65%)

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
           W+ ARN AI+ L+ G GLR +E  +L  + +  D+  L++ GKG K R+VPL
Sbjct: 101 WLTARNKAIIALMLGSGLRQNEICTLVKKGLDFDRGALQVTGKGCKDRLVPL 152


>gi|150401647|ref|YP_001325413.1| phage integrase family protein [Methanococcus aeolicus Nankai-3]
 gi|150014350|gb|ABR56801.1| phage integrase family protein [Methanococcus aeolicus Nankai-3]
          Length = 324

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 8/168 (4%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIV 200
           +L+++  TK    R++ I+ L Y  G RI E L+L  ++    +   + +  KG ++R+ 
Sbjct: 143 ILNSNSATK---VRDALIIRLTYDTGARIGEILNLKLKDCDFQKGIFKFRNTKGREVRLT 199

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
                  KA+  Y D        N  L      G  G      VF+R + +L     LP 
Sbjct: 200 VCAYDTLKALKHYIDYYMKSKKSNDYLFQNKHNGKVGDYWIGKVFKRTVNKLVGRGTLPK 259

Query: 259 S--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +   T H+LRH     LL+ G  L  +   +GH  + TT IY + NS+
Sbjct: 260 NKRITLHSLRHGRVVDLLNKGYGLDIVGDYVGHKDIRTTMIYAHSNSR 307


>gi|320449745|ref|YP_004201841.1| transposase [Thermus scotoductus SA-01]
 gi|320149914|gb|ADW21292.1| transposase [Thermus scotoductus SA-01]
          Length = 391

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/282 (20%), Positives = 118/282 (41%), Gaps = 39/282 (13%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKK 121
           ++++    +RA + +        R++ R L  +K+  +   + ++   +    ++  L K
Sbjct: 120 LQEVKPVHVRAAVDRVVEAGYAPRTVGRVLMRLKALFREALRLELVARNPAEAVKVRLPK 179

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
                RAL   +   L++      S +        + +L L+   GLR  EAL+L  ++I
Sbjct: 180 GEKAARALEPHEVARLLEAAEASRSKDM-------ALLLRLMLETGLRRGEALALQWRDI 232

Query: 182 MDDQSTL-------RIQGKGDKIRIVPLLPSVRKAILEYYD---------------LCPF 219
             +   L       ++ G+G      P  P+ ++ +                    L P 
Sbjct: 233 DLEAGELTVGRAWVKVAGRGAFSE--PKTPTAKRKVPLPRGLLLRLKARREELLARLTPE 290

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
           +++    L L  G+  KP++P  F  Y+R+L    GL      H LRH++AT  LS G  
Sbjct: 291 EVD---GLFLVGGV--KPVDPDAFNHYLRRLAERAGLG-RVRVHDLRHTWATLALSRGVP 344

Query: 280 LRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPS 320
           L  +   LGH   + T  +Y ++  +    W++++ +  +P+
Sbjct: 345 LEVVSERLGHASPTITLNVYRHLLEEERRGWVLDLEELLYPA 386


>gi|253572132|ref|ZP_04849536.1| integrase [Bacteroides sp. 1_1_6]
 gi|251838312|gb|EES66399.1| integrase [Bacteroides sp. 1_1_6]
          Length = 396

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 70/164 (42%), Gaps = 48/164 (29%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           A L+  Y  GLR S+ ++LT  NI++  Q T  I              SV+  I      
Sbjct: 238 AFLFCCYA-GLRYSDFINLTAANIVELHQETWLI------------YKSVKTGI------ 278

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-------------- 262
                  +++LPL+    GK L   V + Y   L  +  L  ++                
Sbjct: 279 -------DVRLPLYLLFEGKGLR--VLENYKDDLNGFFRLKDNSNVNKDLNALAKLAEID 329

Query: 263 -----HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                HT RH+ AT L+ +G ++ ++Q +LGH  + TTQ+Y N+
Sbjct: 330 KRISFHTARHTNATLLIYSGANITTVQKLLGHKSVKTTQVYANI 373


>gi|153011637|ref|YP_001372851.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188]
 gi|151563525|gb|ABS17022.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188]
          Length = 193

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 19/161 (11%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL--------RIQGKGDKIRIVPLLPSV 206
           RN+A+L L +  GLR  E   +    ++D  + L        RI  K    R VP+ P +
Sbjct: 30  RNAAMLLLSFKAGLRAGEIAKIEWSMLLDANNKLGTSINLPGRIT-KNAHPRRVPIHPDL 88

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           RKA+ +   L     +LN   P+    RG+ ++      + + +    GL    ++H+ R
Sbjct: 89  RKALQK---LAKGRGHLN--GPVIVSERGRAMSAKSVVNWFKHIYTLAGLE-GCSSHSGR 142

Query: 267 HSFATH----LLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            +F T     +   GG LR +Q + GH  ++TTQ Y + +S
Sbjct: 143 RTFVTQAARLVHKAGGSLRDVQLLAGHRSITTTQAYIDGDS 183


>gi|324020550|gb|EGB89769.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 117-3]
          Length = 336

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 243 FQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           ++++   LRR    +P +   H LRH+FA+H + NGG++ ++Q ILGH  +  T  Y ++
Sbjct: 257 YEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQTMTYAHL 316


>gi|119854946|ref|YP_935551.1| phage integrase family protein [Mycobacterium sp. KMS]
 gi|119697664|gb|ABL94736.1| phage integrase family protein [Mycobacterium sp. KMS]
          Length = 360

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 26/175 (14%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQ------GKGDKIRIVPLLP 204
           AR+ A   L+   GLRI+E   L   +I   +     L ++      G+G K R+VPL+ 
Sbjct: 168 ARSYAAAQLMMRIGLRINECCYLDLDDIRWELGRFGKLHVRHGKGSRGRGPKQRVVPLIN 227

Query: 205 SVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRG-----------KPLNPGVFQRYIRQL 250
              + +  Y +               PLF   R            +PL   + Q   R L
Sbjct: 228 GADRTLRWYVEDVWGHFGDGWDQPGTPLFPSERHHPDGSHIRVSREPLRAALSQAVERHL 287

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            ++ G     T H LRH  A+ +  +G DL +IQ +LGH  ++TT  Y +V+ ++
Sbjct: 288 PQWKG---RLTPHVLRHYCASEVYRSGMDLVAIQELLGHQWVATTMRYVHVHREH 339


>gi|119714857|ref|YP_921822.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119535518|gb|ABL80135.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 329

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 114/288 (39%), Gaps = 24/288 (8%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAF---YTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +R LS  T+ SY    R  L +L      + + +    +   + T    ++   R     
Sbjct: 19  QRDLSNHTIGSYRDTWRMLLKYLTTTLGVSVDAVDFDAVTATNITRFLDYLEHERGNSAK 78

Query: 85  DRSLKRSLSGIKSFLKYL---KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            R+++  L+ I++ L +          T + +L +   + +  +   L   + +      
Sbjct: 79  TRNVR--LTAIRAVLGHALPDHPEHAATITQVLAIPPKRTTRPVIEFLRPDEVV-----A 131

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIV 200
           LL     T     R+ A+L +    GLRISE  SLT  ++ +     +   GKG + RI 
Sbjct: 132 LLAAPDPTTRTGRRDHALLAMTVQTGLRISEVCSLTIDDVHLGTGPHVTCTGKGRRRRIT 191

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ--LRRYLGLPL 258
           PL  +    + +Y      + +      LF G RG  L+    +  +           P 
Sbjct: 192 PLTGATVSVMTDYLT----ERSARPGTALFCGPRGLSLSRDALEHRLATHVAAAAAACPS 247

Query: 259 ST----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            T    T HTLRH+ A +LL+ G D+  I   LGH    +T  Y + +
Sbjct: 248 LTGKHVTMHTLRHTAAMNLLAAGVDVAVIALWLGHADTHSTDGYLHAD 295


>gi|313886120|ref|ZP_07819854.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332300732|ref|YP_004442653.1| integrase family protein [Porphyromonas asaccharolytica DSM 20707]
 gi|312924423|gb|EFR35198.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332177795|gb|AEE13485.1| integrase family protein [Porphyromonas asaccharolytica DSM 20707]
          Length = 423

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 39/71 (54%)

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           Y++++    G+  + T H  RH+FAT  LS G  + S+  +LGH  + TTQIY  + +K 
Sbjct: 337 YLKEIADICGIKKNLTFHLARHTFATMSLSKGVPIESVSKMLGHTNIRTTQIYARITNKK 396

Query: 306 GGDWMMEIYDQ 316
               M +  D+
Sbjct: 397 IEHDMEQFADK 407


>gi|228471367|ref|ZP_04056168.1| integrase [Porphyromonas uenonis 60-3]
 gi|228306868|gb|EEK15981.1| integrase [Porphyromonas uenonis 60-3]
          Length = 423

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 39/71 (54%)

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           Y++++    G+  + T H  RH+FAT  LS G  + S+  +LGH  + TTQIY  + +K 
Sbjct: 337 YLKEIADICGIKKNLTFHLARHTFATMSLSKGVPIESVSKMLGHTNIRTTQIYARITNKK 396

Query: 306 GGDWMMEIYDQ 316
               M +  D+
Sbjct: 397 IEHDMEQFADK 407


>gi|291457789|ref|ZP_06597179.1| site-specific recombinase, phage integrase family [Bifidobacterium
           breve DSM 20213]
 gi|291380842|gb|EFE88360.1| site-specific recombinase, phage integrase family [Bifidobacterium
           breve DSM 20213]
          Length = 447

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 73/176 (41%), Gaps = 27/176 (15%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-----QGKGD-------------K 196
           R S  L LL G GLRI E   L  ++I  D   L +     QG  D              
Sbjct: 220 RLSIHLALLVG-GLRIGEVCGLQLRDIDLDHRLLYVRHSVTQGPDDLGEYRLDETKTPES 278

Query: 197 IRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRY 253
            R+VP+   V + I E+ D  CP   + +    LF  IR   + LNP   QR  R  R+ 
Sbjct: 279 HRVVPIPAPVCRLIREHIDRFCP---DRDPDTMLFHAIRHPERVLNPTTIQRQFRTARKR 335

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGD 308
           +      T H+LR + AT  +  GG LR     LGH  +    + Y  V  ++  D
Sbjct: 336 INRE-DVTFHSLRATHATMFMIQGGTLRETMDELGHVDVDVAVRCYQRVVPRHRRD 390


>gi|221198844|ref|ZP_03571889.1| phage integrase family protein [Burkholderia multivorans CGD2M]
 gi|221205104|ref|ZP_03578120.1| phage integrase family protein [Burkholderia multivorans CGD2]
 gi|221174895|gb|EEE07326.1| phage integrase family protein [Burkholderia multivorans CGD2]
 gi|221181295|gb|EEE13697.1| phage integrase family protein [Burkholderia multivorans CGD2M]
          Length = 613

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 75/352 (21%), Positives = 129/352 (36%), Gaps = 99/352 (28%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +ERG++  ++Q  +C+   +  FLA  +            +++   A  +  R +  G  
Sbjct: 270 VERGVALSSMQVEDCEA--YKAFLAAPSA-----------AFSGPPASRASGRWRPFGPG 316

Query: 87  SLK-----RSLSGIKSFLKYLKKRK---------ITTESNILNMRNLKKSNSLPRALNEK 132
            L       ++  I++  ++L K +         +     + + + ++ S +LP  L  +
Sbjct: 317 GLSLESQLYAVRAIRAAFEWLVKVRYLAGNPWAAVVDPKPVKHAKRMQVSRALPVDLWAR 376

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA-------LSLTPQNI-MDD 184
               L D       H ++W  AR  A+L L+   GLRI+EA       L L P +  +  
Sbjct: 377 TRAALADWSEGSGPHASRWRAAR--ALLLLMGDAGLRIAEATAASRDALELHPADGEIPA 434

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN---------LNIQLPLF----- 230
              LR+ GK  K R VPL  +   A+  ++     D +         + +  PL      
Sbjct: 435 TWELRVIGKRRKERFVPLSGTCIDALRAHWRDRGMDFDAADGTGRSDVALIAPLVIPRTP 494

Query: 231 --------------------------RGIRGKPLNPGVFQRYIRQL------------RR 252
                                     RG RG      + Q  + QL            RR
Sbjct: 495 RAREKFAPNDDASNGAAQKTATGYSVRGARG------LAQWAVEQLLEKMPDLTEPERRR 548

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             G+    + H  RH+F T  ++    L  +Q +LGH  L TT +Y     K
Sbjct: 549 LAGV----SPHAFRHTFGTQSVATDVPLDVVQQLLGHASLQTTSVYVTAEEK 596


>gi|322372958|ref|ZP_08047494.1| site-specific recombinase, phage integrase family [Streptococcus
           sp. C150]
 gi|321278000|gb|EFX55069.1| site-specific recombinase, phage integrase family [Streptococcus
           sp. C150]
          Length = 356

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 120/294 (40%), Gaps = 48/294 (16%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRT----------QKIGDRSLKRSLSGIKSFLKYLKKRKI 107
           I I+T+  L+  ++ +F+   R           Q +   ++ R+LS + S  KYL +   
Sbjct: 66  IDIKTLENLTKKDMESFVLYLRERPSLNTYSTKQGVSQTTINRTLSALSSLYKYLTEEVE 125

Query: 108 TTESNILNMRNLKKSNSL--------PRALNEKQALTLVDNVL-----LHTSHETKWID- 153
             +      RN+ K  S          RA N KQ L L D  +     +   +E K  + 
Sbjct: 126 GPDGEPYFYRNVMKKVSTKKKKETLAARAENIKQKLFLGDETMEFLDYVEKEYEVKLSNR 185

Query: 154 ---------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
                     R+ AI+ LL   G+R+SEA++L  ++I      + +  KG K   V +  
Sbjct: 186 AKSSFYKNKERDLAIIALLLASGVRLSEAVNLDLKDINLKMMVIDVTRKGGKRDSVNV-A 244

Query: 205 SVRKAILEYYDLCPFD-------LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           S  K  LE Y L   D        +L + L  +RG+  + ++    ++ + +  +     
Sbjct: 245 SFAKPYLESY-LSIRDKRYKAEKQDLALFLTEYRGVPNR-IDASSIEKMVAKYSQ--DFK 300

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGD 308
           +  T H LRH+ AT L         +   LGH     T +YT++     KN  D
Sbjct: 301 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|313886232|ref|ZP_07819961.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924303|gb|EFR35083.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 423

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 39/71 (54%)

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           Y++++    G+  + T H  RH+FAT  LS G  + S+  +LGH  + TTQIY  + +K 
Sbjct: 337 YLKEIADICGIKKNLTFHLARHTFATMSLSKGVPIESVSKMLGHTNIRTTQIYARITNKK 396

Query: 306 GGDWMMEIYDQ 316
               M +  D+
Sbjct: 397 IEHDMEQFADK 407


>gi|297516648|ref|ZP_06935034.1| tyrosine recombinase [Escherichia coli OP50]
          Length = 185

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 66/158 (41%), Gaps = 2/158 (1%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILE 212
           AR+  ++ L Y  G+RISE L L  Q++  ++  + I+   +    V PL    R+A+  
Sbjct: 13  ARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVER 72

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +          +    +F   RG  L+     R IR      G    T  H LRH+    
Sbjct: 73  WTQERANWKGADRTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYE 132

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-GGDW 309
           L   G D R IQ  LGH  +  T  YT  N+    G W
Sbjct: 133 LAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLW 170


>gi|110807982|ref|YP_691502.1| tyrosine recombinase [Shigella flexneri 5 str. 8401]
 gi|300818491|ref|ZP_07098700.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 107-1]
 gi|300823755|ref|ZP_07103880.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 119-7]
 gi|300895832|ref|ZP_07114414.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 198-1]
 gi|300905283|ref|ZP_07123055.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 84-1]
 gi|300926461|ref|ZP_07142257.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 182-1]
 gi|300977981|ref|ZP_07174112.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 45-1]
 gi|301021321|ref|ZP_07185350.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 69-1]
 gi|301048270|ref|ZP_07195304.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 185-1]
 gi|301305107|ref|ZP_07211207.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 124-1]
 gi|301328032|ref|ZP_07221193.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 78-1]
 gi|301646818|ref|ZP_07246667.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 146-1]
 gi|309795580|ref|ZP_07689996.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 145-7]
 gi|110617530|gb|ABF06197.1| Type 1 fimbriae Regulatory protein fimE [Shigella flexneri 5 str.
           8401]
 gi|300299892|gb|EFJ56277.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 185-1]
 gi|300360248|gb|EFJ76118.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 198-1]
 gi|300398172|gb|EFJ81710.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 69-1]
 gi|300402867|gb|EFJ86405.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 84-1]
 gi|300409775|gb|EFJ93313.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 45-1]
 gi|300417568|gb|EFK00879.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 182-1]
 gi|300523667|gb|EFK44736.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 119-7]
 gi|300528895|gb|EFK49957.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 107-1]
 gi|300839612|gb|EFK67372.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 124-1]
 gi|300845479|gb|EFK73239.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 78-1]
 gi|301074988|gb|EFK89794.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 146-1]
 gi|308120704|gb|EFO57966.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 145-7]
 gi|315255840|gb|EFU35808.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 85-1]
 gi|315286852|gb|EFU46269.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 110-3]
 gi|315293234|gb|EFU52586.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 153-1]
 gi|315298920|gb|EFU58174.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 16-3]
 gi|324005154|gb|EGB74373.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 57-2]
 gi|324016931|gb|EGB86150.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 117-3]
          Length = 184

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 66/158 (41%), Gaps = 2/158 (1%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILE 212
           AR+  ++ L Y  G+RISE L L  Q++  ++  + I+   +    V PL    R+A+  
Sbjct: 12  ARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVER 71

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +          +    +F   RG  L+     R IR      G    T  H LRH+    
Sbjct: 72  WTQERANWKGADRTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYE 131

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-GGDW 309
           L   G D R IQ  LGH  +  T  YT  N+    G W
Sbjct: 132 LAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLW 169


>gi|77454861|ref|YP_345729.1| putative transposase [Rhodococcus erythropolis PR4]
 gi|77019861|dbj|BAE46237.1| putative transposase [Rhodococcus erythropolis PR4]
          Length = 611

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 121 KSNSLPRALNEKQA---LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           K   LPR L++  A   LT   N+           D      + +L   G+R  E L LT
Sbjct: 325 KDKPLPRFLDDGAAAKFLTAARNL----------PDEFGRLAIEMLSRTGMRKGELLDLT 374

Query: 178 PQNIMDDQST--LRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
             +++   S   LRI  GK    R VPL P ++  I  + +  P D   +   PL    R
Sbjct: 375 IDSVVQIGSAYWLRIPVGKLHNDRYVPLHPQLKTMIDTWLEHRP-DWQDS---PLLFTDR 430

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G+P+      + ++      G+      H LRH+ AT  ++ G  L +I ++LGH  +  
Sbjct: 431 GRPIPGTRIDKAVQSAAAAAGIG-HVHPHQLRHTLATQAINRGMSLEAIAALLGHKTMEM 489

Query: 295 TQIYTNVNSKNGGD 308
           T +Y  +  +   D
Sbjct: 490 TMVYARIADRTVAD 503


>gi|325280482|ref|YP_004253024.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
 gi|324312291|gb|ADY32844.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
          Length = 372

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 14/146 (9%)

Query: 163 LYGC--GLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           L+ C   LRIS+ L+L  + I+D  +  + +     K +   ++P   +A          
Sbjct: 224 LFSCLTSLRISDILTLRWEEIVDFAAGGKCVYTVTQKTKTEDIIPISDEA---------- 273

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
            L L    P   G+  K L     Q  +++  R  G+  + T H+ R +FAT   + G D
Sbjct: 274 -LQLIGYSPEKTGLVFKGLKRCWTQYPMKEWIRTAGITKNITFHSYRRTFATLQAATGTD 332

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKN 305
           +R+IQSI+ H  ++TTQ Y  V   N
Sbjct: 333 IRTIQSIMAHKSITTTQRYMKVVDSN 358


>gi|152995812|ref|YP_001340647.1| phage integrase family protein [Marinomonas sp. MWYL1]
 gi|150836736|gb|ABR70712.1| phage integrase family protein [Marinomonas sp. MWYL1]
          Length = 283

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 10/139 (7%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYD-LC 217
           + L Y  G+RISE   L   ++      +++ QGKG + R V    S+++ +  Y+    
Sbjct: 124 MVLAYTTGMRISEVNELRVNDLDLTHHCIKVRQGKGQQDRYVLFPQSLQQVLGRYWQRYE 183

Query: 218 PFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
           P D+       +  G+ + +PL+    +   ++  +  G+      H+LRH+FA H L  
Sbjct: 184 PCDV-------VVYGLDKHRPLHSKYLRLETKEAAKRAGIQKCIRFHSLRHAFACHQLLA 236

Query: 277 GGDLRSIQSILGHFRLSTT 295
           G  L  +Q++LGH ++ TT
Sbjct: 237 GMPLPRLQALLGHKQIQTT 255


>gi|94442222|dbj|BAE93610.1| integron integrase [uncultured bacterium]
          Length = 211

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 48/192 (25%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K+   LP  L + +  TL++N           +   N  I  LLYG G+R  E L L   
Sbjct: 31  KQPRHLPVVLTQDEVGTLLEN-----------MKGVNGLIARLLYGTGMRKMECLRLRIM 79

Query: 180 NIMDDQSTLRIQ-GKG--DKIRIVP--LLPSVRKAILEYYDLCPFDLNLN---IQLPLF- 230
           ++  D S + ++ GKG  D+I ++P  L+ S+R  +     L  +D++     ++LP   
Sbjct: 80  DVDFDYSQIHVRSGKGGKDRIALLPDCLVASLRSQLEHTEKLHKYDIDEGYGEVELPFAL 139

Query: 231 --------RGIRGKPLNP----------GVFQRY----------IRQLRRYLGLPLSTTA 262
                   R  + + + P          GV +R+          IRQ   +  +    + 
Sbjct: 140 ERKYPNAGREWKWQYVFPSTKRSVDKRTGVIRRHHWHDTNVSRAIRQSVCFSRISKHVSV 199

Query: 263 HTLRHSFATHLL 274
           HTLRHSFATHLL
Sbjct: 200 HTLRHSFATHLL 211


>gi|15837280|ref|NP_297968.1| phage-related integrase [Xylella fastidiosa 9a5c]
 gi|9105558|gb|AAF83488.1|AE003911_10 phage-related integrase [Xylella fastidiosa 9a5c]
          Length = 387

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 119/267 (44%), Gaps = 35/267 (13%)

Query: 53  YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS---LKRSLSGIKSFL-KYLKKRKIT 108
           Y  +     T+ +++ +  R F+   +T     RS   +KR L+  K+ L +  K+ +IT
Sbjct: 98  YWSDFFAGATVSEITPSRQREFVRWLQTGSDTPRSDGYIKRILTVGKAALNRAYKEGEIT 157

Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
           +   I+  ++    + +   L+ +++  L +   L   HE  +        L L YG   
Sbjct: 158 SVPYIIPGKDAPPRDQV---LSLQESAALWEAATL--PHERMY--------LALAYGTLA 204

Query: 169 RISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           R    L L  +   D Q  L  Q   G+    +  P++P     I ++  L P+ L+++ 
Sbjct: 205 RPEAILGLR-REFADIQRRLLTQNPPGRKQTKKFRPVVP-----ICDF--LLPWILSVD- 255

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
           + PL     GKP+    F+   R LR + GLP  T    +RH+ AT L S G   + IQ 
Sbjct: 256 RGPLVH-WHGKPI--ASFKTAWRALRTHAGLPKDTVPKVIRHTMATELRSAGVAAQDIQG 312

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMME 312
           +LGH     T   T+V +K   D+M +
Sbjct: 313 MLGHRAYGGT---TDVYAKYRPDYMAD 336


>gi|325525694|gb|EGD03452.1| site-specific tyrosine recombinase XerC [Burkholderia sp. TJI49]
          Length = 106

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 5/107 (4%)

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++R  +++     +  RS+   LS  ++F ++L +      + +  +R  K+  +LP+AL
Sbjct: 2   DMRGAVARAHAGGLSARSISHRLSAWRAFYRWLAQHVEMPANPVAAVRAPKRPKTLPKAL 61

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           +   A TL++  L  T+        R+ AIL L Y  GLR++E + L
Sbjct: 62  SVDDASTLMEAPLADTTE-----GIRDHAILELFYSSGLRLAELIGL 103


>gi|290770043|gb|ADD61807.1| putative protein [uncultured organism]
          Length = 372

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 79/173 (45%), Gaps = 32/173 (18%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQS-----TLRIQGKGDKIRIVPLLPSVRKAILEYY 214
            L+GC  GLR S+   LT Q I    +     T R+Q K  +I   P+         E Y
Sbjct: 224 FLFGCLTGLRKSDIKQLTWQQIQPYTNGKMFVTTRMQ-KTKQIVHNPISD-------EAY 275

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
            L    L    +  +F G + K L  G  +R++       G+    T H  RHSF +  +
Sbjct: 276 GL----LGERCEGLIFDGFKDKMLQ-GPLKRWLLAA----GITKKITFHCTRHSFGSLHV 326

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
             G D+  IQ+ LGH  ++TTQIY+ + ++     M E+ D+    IT K KK
Sbjct: 327 EMGTDMAVIQAYLGHKNITTTQIYSKMAARQ----MCEVVDK----ITLKRKK 371


>gi|154502506|ref|ZP_02039566.1| hypothetical protein RUMGNA_00319 [Ruminococcus gnavus ATCC 29149]
 gi|153796902|gb|EDN79322.1| hypothetical protein RUMGNA_00319 [Ruminococcus gnavus ATCC 29149]
          Length = 345

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 122/290 (42%), Gaps = 31/290 (10%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTE----EKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           RGLSK T+ SY+  T   LI   +  +    ++IT   +   + ++  +++   R   + 
Sbjct: 26  RGLSKNTINSYKT-TFTLLIKYMYSVKNMKADEITFGCLDVNTLSDFMSWLEHERKCSVT 84

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--L 142
            R+ +  L+ + SF +Y +       S   +      S   P+   +++     D V  L
Sbjct: 85  TRNQR--LAALYSFSEYAQNYDFDAASTFRSAVLRIPSKKAPK---KRRVGFTTDEVKIL 139

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ--NIMDDQSTLRIQGKGDKIRIV 200
           L   +       R+  +L  +Y  G R  E   LT +  N     +T+ I GKG K R +
Sbjct: 140 LALPNPKSETGLRDMVLLSFMYATGTRAQEVCDLTVKSVNFRSTGTTIDIVGKGSKARRI 199

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLS 259
             +P    ++L+ Y       +  I+    R I     +  +    + ++ ++Y+ L   
Sbjct: 200 -RIPDTCASMLKKYIK-----HRRIETEPDRHIFSSQTHEHMTISCVEEIYKKYIKLAKE 253

Query: 260 TTA----------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            T           H++RH+   H+L  G  +  I++ LGH  + TTQIYT
Sbjct: 254 KTPNLFKEEHYSPHSMRHTTGQHMLEAGVPIMVIKAFLGHASVQTTQIYT 303


>gi|154505593|ref|ZP_02042331.1| hypothetical protein RUMGNA_03132 [Ruminococcus gnavus ATCC 29149]
 gi|166032352|ref|ZP_02235181.1| hypothetical protein DORFOR_02055 [Dorea formicigenerans ATCC
           27755]
 gi|153794032|gb|EDN76452.1| hypothetical protein RUMGNA_03132 [Ruminococcus gnavus ATCC 29149]
 gi|166028075|gb|EDR46832.1| hypothetical protein DORFOR_02055 [Dorea formicigenerans ATCC
           27755]
          Length = 387

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 73/182 (40%), Gaps = 45/182 (24%)

Query: 165 GCGLRISEALSLTPQNI---------------MDDQSTLRIQGK------GDKIRIVPLL 203
           G G+R  E L LT  ++               + D+ T +   K       + IR +P+ 
Sbjct: 186 GTGMRGGELLGLTWDDVDFRKREISVNKTLVYIKDKETKKYVFKYQTPKTKNSIRTIPMQ 245

Query: 204 PSVRKAIL-EYYDLCPFDLNLNIQLPL-------FRGIRGKPLNPGVFQRYIRQLRRYLG 255
            SV KA+  ++  L    L+ +   PL       F G  GKP+    FQ  +  + + + 
Sbjct: 246 DSVYKALKRQWIQLKEMQLSASEWQPLEGFENLVFVGKNGKPITEHTFQVTLDWIEKSIN 305

Query: 256 LPLSTTA---------------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYT 299
                 A               H LRH+FAT     G D + +Q  LGH+ ++ T  +YT
Sbjct: 306 KERKKQAEKNKTVFIPIPHFYPHALRHTFATRCFEAGIDAKVVQGFLGHYSIAITLDLYT 365

Query: 300 NV 301
           +V
Sbjct: 366 HV 367


>gi|15894395|ref|NP_347744.1| XerC/XerD family integrase/recombinase [Clostridium acetobutylicum
           ATCC 824]
 gi|15024028|gb|AAK79084.1|AE007627_8 Integrase/recombinase (xerC/xerD family); CF-10 family [Clostridium
           acetobutylicum ATCC 824]
 gi|325508523|gb|ADZ20159.1| Integrase/recombinase (xerC/xerD family); CF-10 family [Clostridium
           acetobutylicum EA 2018]
          Length = 340

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 125/303 (41%), Gaps = 33/303 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + ++Q  E E   SK T++ Y+ + + FL++L  +   K  +   ++         ++ +
Sbjct: 28  EEFIQYCEAEDK-SKETVRVYKSNIKIFLVWLLKFARNKRFVDIKKKDIMLYQNWLLNTQ 86

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R      + L+  LS + SF++ +   +     NI+       S   P    E +  T+ 
Sbjct: 87  RLSPARIKHLRAPLSSMSSFVEDILDDEYPEFRNII-------SKIKPPTKQETREKTVF 139

Query: 139 DNVLLHTSHETKWIDAR--NSAILYLLYGCGLRISEAL----SLTPQNIMDDQS---TLR 189
            N  +    E    D +   +  +  L   G+R SE L    S   +N +D++    T +
Sbjct: 140 TNEQVEKLIEMLIKDKKYQQACFVACLAASGVRKSEILQFKVSFFTENSLDEEGMYHTPK 199

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL------NLNIQLPLFRGIRGK----PLN 239
           I+ KG      PL+  + K I+++     FDL       L I       ++ K    P  
Sbjct: 200 IRTKGHGKLGKPLVKFIIKDIVKH----AFDLWIEERKQLGIDTDDLFVVKHKDKWYPAK 255

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                 ++ +  + +G    T  H  RH  AT L  NG  +  I+  LGH   STTQIY 
Sbjct: 256 VSTVNGWMNKFSKIIGEDCYT--HAFRHYAATWLKRNGATIDQIKDFLGHNDTSTTQIYI 313

Query: 300 NVN 302
           +++
Sbjct: 314 DID 316


>gi|300992559|ref|ZP_07179926.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 200-1]
 gi|732682|emb|CAA85726.1| FimE protein [Escherichia coli]
 gi|1816486|emb|CAA71840.1| FimE recombinase [Escherichia coli]
 gi|300305300|gb|EFJ59820.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 200-1]
 gi|324012903|gb|EGB82122.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 60-1]
          Length = 184

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 66/158 (41%), Gaps = 2/158 (1%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILE 212
           AR+  ++ L Y  G+RISE L L  Q++  ++  + I+   +    V PL    R+A+  
Sbjct: 12  ARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVER 71

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +          +    +F   RG  L+     R IR      G    T  H LRH+    
Sbjct: 72  WTQERANWKGADRTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYE 131

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-GGDW 309
           L   G D R IQ  LGH  +  T  YT  N+    G W
Sbjct: 132 LAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLW 169


>gi|332884809|gb|EGK05065.1| hypothetical protein HMPREF9456_03218 [Dysgonomonas mossii DSM
           22836]
 gi|332885880|gb|EGK06126.1| hypothetical protein HMPREF9456_02390 [Dysgonomonas mossii DSM
           22836]
          Length = 98

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 18/99 (18%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           I+ +  NP  F  +I             + HTLRH+ A HLL  G  L  I+ ILGH  +
Sbjct: 3   IKTRKENPAFFTGHI-------------SCHTLRHTKAMHLLQAGVILHHIRDILGHSSV 49

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHPSIT-----QKDK 326
            TT+IY   +SK   + +   Y +  P+I      +KDK
Sbjct: 50  MTTEIYARSDSKQKREAIERAYLRLSPNIESENLWEKDK 88


>gi|331646067|ref|ZP_08347170.1| integrase for prophage [Escherichia coli M605]
 gi|331044819|gb|EGI16946.1| integrase for prophage [Escherichia coli M605]
          Length = 397

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 77/188 (40%), Gaps = 28/188 (14%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--------TKWIDARNSAILYLLYGCGLRISEALS 175
           S P  L   +  T+ +  +   +HE         K  D   + ++ +    G R  EA++
Sbjct: 206 SYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICLSTGARWREAVN 265

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           LT   +   + T  ++ KG K R +P+   + + I+    L  F+               
Sbjct: 266 LTRSQVTKYRITF-VRTKGKKNRSIPISKELYEEIMA---LDGFNF-------------- 307

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  FQ      +  + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T
Sbjct: 308 --FTDCYFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMT 365

Query: 296 QIYTNVNS 303
             Y ++ +
Sbjct: 366 MRYAHLET 373


>gi|225574819|ref|ZP_03783429.1| hypothetical protein RUMHYD_02896 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038019|gb|EEG48265.1| hypothetical protein RUMHYD_02896 [Blautia hydrogenotrophica DSM
           10507]
          Length = 279

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 98/239 (41%), Gaps = 47/239 (19%)

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK---- 150
           I+SFL Y+KK     ES I     L+K   LP ++N K A     N  L+ S  T+    
Sbjct: 34  IQSFLMYIKKHGFCKESVIQYKEKLRK-EYLPASVNVKLAAI---NGFLNYSGATELKVK 89

Query: 151 --------------------WIDARNSA----------ILYLLYGCGLRISEALSLTPQN 180
                               ++   N+A          +L  + G G+R+SE   +T + 
Sbjct: 90  QLRIQKKTYCAKEKELSKNEYLCMVNTARSLGQEKLALLLQTICGTGIRVSELSFITAEA 149

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           + + ++ + ++GK    R V +   +RK +  Y               +F    G+PL+ 
Sbjct: 150 VCNGEALIHMKGK---TRTVLIPGKLRKVLKRYMGSQKISSG-----AVFVTRTGRPLDR 201

Query: 241 GVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
               + +++L    G+       H LRH FA    +   D+  +  +LGH  ++TT+IY
Sbjct: 202 SNIWKMMKRLCGKAGVETKKVFPHNLRHLFARCFYAADKDIAKLADVLGHSSINTTRIY 260


>gi|195978129|ref|YP_002123373.1| site-specific tyrosine recombinase XerS [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|254799370|sp|B4U2Z3|XERS_STREM RecName: Full=Tyrosine recombinase xerS
 gi|195974834|gb|ACG62360.1| tyrosine recombinase XerC [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 356

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 117/299 (39%), Gaps = 58/299 (19%)

Query: 58  ITIQTIRQLSYTEIRAFISKRR---------TQK-IGDRSLKRSLSGIKSFLKYLKKRKI 107
           + + T+  LS  ++ AFI   R         T+K +   ++ R+LS + S  KYL +   
Sbjct: 66  VDLTTLEHLSKKDMEAFILYLRERPSLNTYSTKKGVSQTTINRTLSALSSLYKYLTEEVE 125

Query: 108 TTESNILNMRNL-------KKSNSLP-RALNEKQALTLVDNVLLHTSHETKWID------ 153
                    RN+       KK  +L  RA N KQ L L D  +    +  K  +      
Sbjct: 126 NEHGEPYFYRNVMKKVATKKKRETLAARAENIKQKLFLGDETMAFLDYVDKEYEYKLSNR 185

Query: 154 ---------ARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVP 201
                     R+ AI+ LL   G+R+SEA++L  +++   M      R  GK D + +  
Sbjct: 186 AKASFRKNKERDLAIIALLLASGIRLSEAVNLDLKDVNLNMMLVEVTRKGGKRDSVNVAA 245

Query: 202 LLP-------SVRKA--ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
                     SVRK     E  D+  F       L  +RG+  + ++    ++ + +   
Sbjct: 246 FAKPHLEAYLSVRKDRYQAEKQDVAFF-------LTAYRGLPNR-IDASSIEKMVGKYSE 297

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGD 308
                +  T H LRH+ AT L         +   LGH     T +YT++     KN  D
Sbjct: 298 --SFKIRVTPHKLRHTLATRLYDTTKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|28465873|dbj|BAC57490.1| transposaseB [Staphylococcus aureus]
          Length = 630

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 116/282 (41%), Gaps = 32/282 (11%)

Query: 38  SYECDTRQFLI-FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS--- 93
           SY  D  Q L  F  F   +   +Q + QL+  EI A++S+     I   ++   +S   
Sbjct: 236 SYVSDIAQRLKEFFNFLDMKFKQVQRVHQLTRVEIEAYLSELNMMGIKPSTITGRISILE 295

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
           G+ S L  L+   + ++  I +    K   + PR ++E     +++ +  H     ++I 
Sbjct: 296 GLFSTLLRLEWDDVPSKILIYSEDYPKIPRAKPRFIDE----FVLEQLNSHLDKLPEYI- 350

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----QGKGDKIRIVPLLPSVRKA 209
              + +  ++  CG+RISE  +L    +++D+         Q K  K  IVP+   V   
Sbjct: 351 ---ATMTMIVQECGMRISELCTLKKGCLLEDKDGDYFLKYYQWKMKKEHIVPISKEVVLL 407

Query: 210 ILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQ------RYIRQLRRYLGLPLS 259
           I    D       ++ + P    LF    G PL    F+       Y + +   LG    
Sbjct: 408 IKVRED------KVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKLGEIYR 461

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             AH  RHS  T +++NG     +Q  LGH     T  Y ++
Sbjct: 462 FHAHAFRHSVGTRMINNGVPQHIVQKFLGHESPEMTSRYAHI 503


>gi|300710747|ref|YP_003736561.1| phage integrase family protein [Halalkalicoccus jeotgali B3]
 gi|299124430|gb|ADJ14769.1| phage integrase family protein [Halalkalicoccus jeotgali B3]
          Length = 253

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 78/183 (42%), Gaps = 43/183 (23%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            RN  ++ L +  G+R+ E  S+    I D Q T         I I         +   Y
Sbjct: 72  GRNELLIRLQFNTGMRVGELASIEMDEI-DRQET--------SIYIPSFKSKSPSSRTVY 122

Query: 214 YDLCPFDLNLNIQLPLFRG--IRGKPL---------NPGVFQRYIRQL------------ 250
           Y+    D  ++  L  +RG  + GK +         NP V   YI Q+            
Sbjct: 123 YNPEYIDFLMDEYLDGYRGKNLVGKDIDTYLFPTQTNPHVTTDYINQIVKGAAESADLQS 182

Query: 251 --------RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                   +R L +    T+HTLRHS+A   + +G + R++Q++LGH +L TT+IY  + 
Sbjct: 183 TAGSYAGGKRKLNM---ITSHTLRHSYAVQAIKSGINPRNLQALLGHEKLETTEIYMKMA 239

Query: 303 SKN 305
            ++
Sbjct: 240 EED 242


>gi|220930678|ref|YP_002507587.1| integrase family protein [Clostridium cellulolyticum H10]
 gi|220001006|gb|ACL77607.1| integrase family protein [Clostridium cellulolyticum H10]
          Length = 423

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 83/193 (43%), Gaps = 47/193 (24%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           +ALN+ Q    +D  L      +K+         + +   GLR  EAL+LT  +I  D +
Sbjct: 204 KALNDTQ----LDAFLYQIGRRSKYF-----MYAFFMLNTGLRPGEALALTRSDI--DFT 252

Query: 187 TLRIQGKGDKI----------------RIVPLLPSVRKAILEYYDLC-----PFDLNLNI 225
           T +I+     I                R VP+ PS   ++L+ Y L      P D     
Sbjct: 253 TNKIKVTKTYIEKLKKVQNSTKTASSRRKVPI-PSEMISLLKEYMLQQPKKEPTD----- 306

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS---TTAHTLRHSFATHLLSNGGDLRS 282
             PLF+   GK  + G    Y+R+  +Y G          HT+RH+FA+ L     D++ 
Sbjct: 307 --PLFQTATGKRPSQG----YLRKRFKYAGASAGCEWVNLHTMRHTFASRLFKKKVDIKV 360

Query: 283 IQSILGHFRLSTT 295
           I  +LGH  +STT
Sbjct: 361 ISELLGHKDVSTT 373


>gi|57650158|ref|YP_185756.1| pathogenicity island protein, integrase [Staphylococcus aureus
           subsp. aureus COL]
 gi|262053200|ref|ZP_06025357.1| pathogenicity island protein, integrase [Staphylococcus aureus
           930918-3]
 gi|282926173|ref|ZP_06333808.1| integrase, superantigen-encoding pathogenicity islands SaPI
           [Staphylococcus aureus A9765]
 gi|15625530|gb|AAL04148.1|AF410775_24 integrase-like protein [Staphylococcus aureus subsp. aureus COL]
 gi|57284344|gb|AAW36438.1| pathogenicity island protein, integrase [Staphylococcus aureus
           subsp. aureus COL]
 gi|259158906|gb|EEW43993.1| pathogenicity island protein, integrase [Staphylococcus aureus
           930918-3]
 gi|282592314|gb|EFB97331.1| integrase, superantigen-encoding pathogenicity islands SaPI
           [Staphylococcus aureus A9765]
          Length = 406

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 30/171 (17%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGK---------GDKIRIVPLLPS------------ 205
           G+RI E L++  ++I  D  +L I G          G  ++      S            
Sbjct: 230 GMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSC 289

Query: 206 --VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
             ++KAILE      ++   LN N    +F   +G P+    F + +R+  + +G+    
Sbjct: 290 EILKKAILENKKDSKWNDGYLNRNF---VFTNHKGNPMQTERFNKILREAAKDVGIDKEV 346

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           ++H LRHS  + L   G  L++I   +GH    TT  IY++V  +   D M
Sbjct: 347 SSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMM 397


>gi|16799149|ref|NP_469417.1| hypothetical protein lin0071 [Listeria innocua Clip11262]
 gi|16412491|emb|CAC95304.1| lin0071 [Listeria innocua Clip11262]
          Length = 400

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 4/75 (5%)

Query: 229 LFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           LF  + GKP+ P  ++QR+ R L R+  LP+    H LRH+ AT LL+ G D++ IQ  L
Sbjct: 312 LFADMEGKPIRPDSIYQRWKRFLERH-NLPV-IRFHDLRHTSATLLLNKGRDIKIIQERL 369

Query: 288 GH-FRLSTTQIYTNV 301
            H   ++T+ IY +V
Sbjct: 370 RHKSSVTTSNIYAHV 384


>gi|149916530|ref|ZP_01905046.1| Integrase [Roseobacter sp. AzwK-3b]
 gi|149809569|gb|EDM69426.1| Integrase [Roseobacter sp. AzwK-3b]
          Length = 188

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 21/191 (10%)

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           +K++ +L +A ++K+AL   +         T+    R+  IL      GLR  E  +L  
Sbjct: 1   MKQAQTLSQA-DQKRALAYCN---------TRRHSLRDRTILQFSILAGLRAKEIAALRI 50

Query: 179 QNIMD------DQSTL-RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            ++ D      DQ TL R Q KG   R V +   +++ +L+ Y     D + N   PLF+
Sbjct: 51  GDVYDASGQVRDQFTLHRSQTKGHHARTVYVSAKLKR-VLDQYRTQVADQDQND--PLFQ 107

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
             +    +     +    + +  GL  + ++H+ R +F T L   G ++R +  + GH  
Sbjct: 108 TQQRTAFSANTMCQLFLNIYKACGLN-NASSHSGRRTFITRLAEQGVNVRLLAELAGHRH 166

Query: 292 LSTTQIYTNVN 302
           +STTQ Y +VN
Sbjct: 167 ISTTQRYIDVN 177


>gi|323965422|gb|EGB60877.1| phage integrase [Escherichia coli M863]
 gi|327250221|gb|EGE61940.1| phage integrase family protein [Escherichia coli STEC_7v]
          Length = 198

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 66/158 (41%), Gaps = 2/158 (1%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILE 212
           AR+  ++ L Y  G+RISE L L  Q++  ++  + I+   +    V PL    R+A+  
Sbjct: 26  ARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVER 85

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +          +    +F   RG  L+     R IR      G    T  H LRH+    
Sbjct: 86  WTQERTNWKGADQTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYE 145

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-GGDW 309
           L   G D R IQ  LGH  +  T  YT  N+    G W
Sbjct: 146 LAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLW 183


>gi|303239113|ref|ZP_07325643.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302593451|gb|EFL63169.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 326

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 64/153 (41%), Gaps = 22/153 (14%)

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL---CP 218
           L  CGLR+SEA +L  +++   +  L I + K DK R VPL P +    L++Y+    C 
Sbjct: 149 LACCGLRVSEATNLKLKDVDFTKGVLLIREAKNDKKRYVPLSPKLTNDFLDFYETIHKCS 208

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-----LSTTAHTLRHSFATHL 273
              +       F   R        F    R+   + G+           H LRH+FA   
Sbjct: 209 EQEDY-----FFPNARKSVYASNHFYNRFREALWHCGIEHKGRGFGPRVHDLRHTFAVRC 263

Query: 274 L----SNGGD----LRSIQSILGHFRLSTTQIY 298
           +     N  D    L  + + LGH+ +S TQ Y
Sbjct: 264 MQKFDKNKKDIVLSLPYLSAYLGHYDISKTQKY 296


>gi|301329889|ref|ZP_07222612.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 78-1]
 gi|300844032|gb|EFK71792.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 78-1]
          Length = 188

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 67/148 (45%), Gaps = 5/148 (3%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           L Y   LR+S+  S+   +I  D   L  Q  G+ +R V L  + ++ I    +  P  +
Sbjct: 36  LGYELMLRVSDLRSIRYDDIKGDHLVLSQQKTGESVR-VRLTDTAKRIIAARREANPDHV 94

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
            L +QL   R  +GKP++       I      LGL LST  H++R S  T    NG D+ 
Sbjct: 95  YL-LQLDSHRS-KGKPVSRSKLHEEISYAGEKLGLNLST--HSMRKSKPTIGYDNGEDIA 150

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            I   LGH  LS+T  Y     +   D+
Sbjct: 151 VISKALGHKSLSSTLHYIGATQRKVDDF 178


>gi|292656400|ref|YP_003536297.1| XerC/D-like integrase [Haloferax volcanii DS2]
 gi|291370519|gb|ADE02746.1| XerC/D-like integrase [Haloferax volcanii DS2]
          Length = 310

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 115/287 (40%), Gaps = 35/287 (12%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G S+ TL +Y        I   FY EE   ++         I  ++ +   + +   + +
Sbjct: 28  GRSERTLNAYS------RILKKFYHEEFPELRP-EDTEVFHIEDYVMRLAQRDLSQNTKR 80

Query: 90  RSLSGIKSFLKYLKKR----KITTESNILNMRNL-KKSNSLPRALNEKQALTLVDNVLLH 144
           R L  + +F  Y  KR    KIT     + +  + K+    P     +    ++ N+   
Sbjct: 81  RYLESLSAFFSYAMKRPRFEKITGNPAAVVLEEIPKQVRDRPDCATWENGRQIIHNIS-- 138

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLL 203
                   D R+  +  +L   G R++EAL +   ++M ++  +R++  KG K  +VP+ 
Sbjct: 139 --------DPRDKTVATVLAKTGCRLTEALEIQVDDLMLEEGFIRLRKRKGGKQTVVPID 190

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLST- 260
               KAI  +     F  N      LF  IRG+ ++    QR +++     G+  P    
Sbjct: 191 QETIKAIQRF----QFIRNGRGTDYLFVSIRGERVSKTSVQRAVKKAAEEAGIMEPGEDR 246

Query: 261 -----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                T HT R  F T + + G     ++ I G     T  IYT V+
Sbjct: 247 FHKKFTPHTYRTVFTTLMRNQGMPDHILRYIRGDSNDETMDIYTRVD 293


>gi|289551321|ref|YP_003472225.1| pathogenicity island protein, integrase [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180853|gb|ADC88098.1| pathogenicity island protein, integrase [Staphylococcus lugdunensis
           HKU09-01]
          Length = 406

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 30/171 (17%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGK---------GDKIRIVPLLPS------------ 205
           G+RI E L++  ++I  D  +L I G          G  ++      S            
Sbjct: 230 GMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSC 289

Query: 206 --VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
             ++KAILE      ++   LN N    +F   +G P+    F + +R+  + +G+    
Sbjct: 290 EILKKAILENKKDSKWNDGYLNRNF---IFTNHKGNPMQTERFNKILREAAKDVGIDKEV 346

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           ++H LRHS  + L   G  L++I   +GH    TT  IY++V  +   D M
Sbjct: 347 SSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMM 397


>gi|83649365|ref|YP_437800.1| integrase [Hahella chejuensis KCTC 2396]
 gi|83637408|gb|ABC33375.1| Integrase [Hahella chejuensis KCTC 2396]
          Length = 337

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 67/158 (42%), Gaps = 19/158 (12%)

Query: 154 ARNSAILYLLYGC---GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
           +RN  +L +   C   G R  EA  L  + I  ++    +  K  K R VP+   +   I
Sbjct: 186 SRNPNVLAMSKICLATGARWGEAEKLNAEQIRHNKVHF-VGTKNSKSRAVPISEELAVEI 244

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           L              +  LFRG   +      F+R ++  R  L LP     H LRH+FA
Sbjct: 245 LS---------GRAERGRLFRGAGSEE----AFERAVK--RAGLTLPHGQLTHILRHTFA 289

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +H + N G++  ++ ILGH  L  T  Y  +   +  D
Sbjct: 290 SHYMINDGNILKLKYILGHASLDMTIRYAKLAPAHLAD 327


>gi|331672347|ref|ZP_08373138.1| integrase for prophage [Escherichia coli TA280]
 gi|331070542|gb|EGI41906.1| integrase for prophage [Escherichia coli TA280]
          Length = 403

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 30/187 (16%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWID-----ARNSAILYLLY----GCGLRISEAL 174
           +LP  L + +  T+ +  +   +HE + I+      R + IL L+       G R  EA+
Sbjct: 206 TLPNPLEKMRKFTIAEKEMAWLTHE-QIIELLSDCKRQNPILALVVKICLSTGARWREAI 264

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +LT   +   + T  ++ KG K R +P+   + + I+    L  F+              
Sbjct: 265 NLTRSQVTKYRITF-VRTKGKKNRSIPISKELYEEIMA---LDGFNF------------- 307

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
                   FQ      +  + LP     H LRH+FA H + +GG++ ++Q ILGH  +  
Sbjct: 308 ---FTDCYFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKM 364

Query: 295 TQIYTNV 301
           T  Y ++
Sbjct: 365 TMRYAHL 371


>gi|295089982|emb|CBK76089.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 329

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/258 (22%), Positives = 109/258 (42%), Gaps = 31/258 (12%)

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNEKQA 134
           KR  Q    +++   +S ++ FL+YL+ +       ++ M +  K++   +P   +E++ 
Sbjct: 60  KRLHQVNAPKTVSDKVSYLRKFLRYLQYK-----GYVVFMPDCPKTSDSYMPYVFSEEEI 114

Query: 135 LTLVDNVLL----HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             L+ +       H + +T+  D     +L +L GCG R+ E L+   +++      + I
Sbjct: 115 QILLSSADQWCDRHKNSKTRQADMEFCMLLRMLLGCGFRLGEPLTAKVKDVNFSSGIILI 174

Query: 191 -QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--RGKPLNPGVFQRYI 247
              K +K R +P+  ++ + +LE Y +    +    +  LF      G   + G+F    
Sbjct: 175 RHAKNNKQRAIPMNETLTE-MLERYCIA-MGIKAEPESYLFPSPVKEGAAASKGIFDLRF 232

Query: 248 RQLRRYLGLPLSTTAHT-------LRHSFATHLLS----NG----GDLRSIQSILGHFRL 292
           R L    GL +   AH+        RH FA H  +    NG      +  +   LGH  +
Sbjct: 233 RNLLMETGLYVPGKAHSRGQCLHCFRHYFAIHSFAQAEKNGRSTDDSVPFLSVYLGHHDM 292

Query: 293 STTQIYTNVNSKNGGDWM 310
             T+ Y   N     ++M
Sbjct: 293 DETEKYLKFNGDMFPEYM 310


>gi|225868545|ref|YP_002744493.1| tyrosine recombinase XerC [Streptococcus equi subsp. zooepidemicus]
 gi|259710442|sp|C0MFD9|XERS_STRS7 RecName: Full=Tyrosine recombinase xerS
 gi|225701821|emb|CAW99258.1| tyrosine recombinase XerC [Streptococcus equi subsp. zooepidemicus]
          Length = 356

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 117/299 (39%), Gaps = 58/299 (19%)

Query: 58  ITIQTIRQLSYTEIRAFISKRR---------TQK-IGDRSLKRSLSGIKSFLKYLKKRKI 107
           + + T+  LS  ++ AFI   R         T+K +   ++ R+LS + S  KYL +   
Sbjct: 66  VDLTTLEHLSKKDMEAFILYLRERPSLNTYSTKKGVSQTTINRTLSALSSLYKYLTEEVE 125

Query: 108 TTESNILNMRNL-------KKSNSLP-RALNEKQALTLVDNVLLHTSHETKWID------ 153
                    RN+       KK  +L  RA N KQ L L D  +    +  K  +      
Sbjct: 126 NEHGEPYFYRNVMKKVATKKKRETLAARAENIKQKLFLGDETMAFLDYVDKEYEHKLSNR 185

Query: 154 ---------ARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVP 201
                     R+ AI+ LL   G+R+SEA++L  +++   M      R  GK D + +  
Sbjct: 186 AKASFRKNKERDLAIIALLLASGIRLSEAVNLDLKDVNLNMMLVEVTRKGGKRDSVNVAA 245

Query: 202 LLP-------SVRKA--ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
                     SVRK     E  D+  F       L  +RG+  + ++    ++ + +   
Sbjct: 246 FAKPHLEAYLSVRKDRYQAEKQDVAFF-------LTAYRGLPNR-IDASSIEKMVGKYSE 297

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGD 308
                +  T H LRH+ AT L         +   LGH     T +YT++     KN  D
Sbjct: 298 --SFKIRVTPHKLRHTLATRLYDTTKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|169344270|ref|ZP_02865251.1| tyrosine recombinase [Clostridium perfringens C str. JGS1495]
 gi|169297601|gb|EDS79702.1| tyrosine recombinase [Clostridium perfringens C str. JGS1495]
          Length = 109

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 33/45 (73%), Gaps = 1/45 (2%)

Query: 261 TAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSK 304
           T H LRH+ AT +   G  D+RS+Q+ILGH  +STTQIYT+V+ +
Sbjct: 50  TPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQIYTHVDDE 94


>gi|302668605|ref|YP_003833053.1| tyrosine recombinase XerC4 [Butyrivibrio proteoclasticus B316]
 gi|302397569|gb|ADL36471.1| tyrosine recombinase XerC4 [Butyrivibrio proteoclasticus B316]
          Length = 379

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 9/159 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-----KIRIVPLLPSVRKA 209
           R+ AI+Y++ G GLR+SE  ++   NI    S + +  KGD         V L   V   
Sbjct: 206 RDKAIVYMILGTGLRVSELCAINCANISYQLSYINVYRKGDGDSKETTDEVYLSDEVMGI 265

Query: 210 ILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLR-RYLGLPLSTTAHTLR 266
           +L+Y ++    +  N +    LF     + + P   +  +++   + LG   +   HTLR
Sbjct: 266 LLDYINIARDQIGANEENYDALFLSSLHRRMTPRAIELMVKEYADKALGTDNNVHPHTLR 325

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSK 304
            +F T       D+ +  +++ H  +  T Q Y   ++K
Sbjct: 326 ATFGTRYYRKWKDISATSTVMNHSGIEITAQYYVKEDAK 364


>gi|189466894|ref|ZP_03015679.1| hypothetical protein BACINT_03276 [Bacteroides intestinalis DSM
           17393]
 gi|189435158|gb|EDV04143.1| hypothetical protein BACINT_03276 [Bacteroides intestinalis DSM
           17393]
          Length = 407

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 19/151 (12%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTL------RIQGKGDKIRIVPLLPSVRKAI--L 211
            L+ C  GL   +A  L    I+ D +        R + K +K R +  +P +  AI  L
Sbjct: 249 FLFSCFTGLAFIDAKELKRTEIIKDNNGKMWIRKGRHKMKKEKARCISNVPLITPAIEIL 308

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           E Y+  P  +  ++ LPLF               Y++Q+     +  + T H  RH+FAT
Sbjct: 309 EKYEDHPTCIEKDVCLPLFCN--------QTMNSYLKQIATLCNIDKNLTTHVARHTFAT 360

Query: 272 HL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            + L+N   L ++  ++GH     TQ Y  V
Sbjct: 361 TITLANKVSLENVAKMMGHASTRMTQHYARV 391


>gi|94442328|dbj|BAE93663.1| integron integrase [uncultured bacterium]
          Length = 211

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 69/153 (45%), Gaps = 37/153 (24%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKG--DKIRIVP--LLPSVRKAILEY 213
           I  LLYG GLR++E+L L  Q+I   Q+ + I+ GKG  D++ I+P  L P +++ + + 
Sbjct: 59  ITQLLYGAGLRLNESLRLRVQDIDFTQNQILIRDGKGAKDRVTILPQSLQPPLQEHLRQV 118

Query: 214 YDLCPFDLNLN---IQLP--LFRGI---------------------------RGKPLNPG 241
             L   DL      + LP  L R I                           R   L+  
Sbjct: 119 RILHDQDLEAGYGAVYLPDALARKIPNAAREWPWQWVFPASRISKDPRTGILRRHHLDSS 178

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           V Q+ +R   R   +P   T H  RHSFATHLL
Sbjct: 179 VVQKAVRDAARRADIPKRVTPHVFRHSFATHLL 211


>gi|76788652|ref|YP_329239.1| prophage LambdaSa03, site-specific recombinase phage integrase
           family protein [Streptococcus agalactiae A909]
 gi|76563709|gb|ABA46293.1| prophage LambdaSa03, site-specific recombinase, phage integrase
           family [Streptococcus agalactiae A909]
          Length = 380

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 73/169 (43%), Gaps = 32/169 (18%)

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI-------RIVP-LLPSVRKAIL--- 211
           L GC  RI EA+S+ P NI     TL++ G  D+        +  P  L S R+ I+   
Sbjct: 205 LNGC--RIGEAISIEPDNIDFKNKTLQLHGTYDRTNGYINGEKTSPKTLASYRETIMTKR 262

Query: 212 ------EYYDLCPFDLNLNIQLPLFRGI-------RGKPLNPGVFQRYIRQLRRYLGLPL 258
                 E   +   + N N   P +R +        G P+    F   +++    L  P+
Sbjct: 263 EMEIIQELEFINELEKNTN---PRYRDMGYIFTTRNGVPIQINSFNLALKKANERLEQPI 319

Query: 259 ST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
           +   T+H  RH+  + L  N   L++I   +GH    TT QIYT++  K
Sbjct: 320 NKNITSHIFRHTLVSRLAENNVPLKAIMDRVGHADAKTTVQIYTHITKK 368


>gi|301308954|ref|ZP_07214899.1| integrase [Bacteroides sp. 20_3]
 gi|300832980|gb|EFK63605.1| integrase [Bacteroides sp. 20_3]
          Length = 379

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 32/160 (20%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
            L+GC  G+   +  +LT  N+++    L I  K  K  +                  PF
Sbjct: 225 FLFGCWTGISFIDIKNLTTDNVVEINGALWIVSKRQKTGV------------------PF 266

Query: 220 DLNLNIQLPLFRGIRGKPL-------NPG---VFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
            + L + +P+    R +P        N G   +  + I+ + R  G+    + H  RHSF
Sbjct: 267 QVKL-MDIPMQIIKRYEPFRKDKRLFNIGSLDMVNKRIKSIARKCGIEKPVSFHLSRHSF 325

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGD 308
           A   L+ G  + S+  ILGH  + TTQIY  V N+K   D
Sbjct: 326 AVMALNYGMPIESVSKILGHTDIKTTQIYAKVTNTKLNSD 365


>gi|300854665|ref|YP_003779649.1| putative integrase/recombinase [Clostridium ljungdahlii DSM 13528]
 gi|300434780|gb|ADK14547.1| putative integrase/recombinase [Clostridium ljungdahlii DSM 13528]
          Length = 199

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 73/154 (47%), Gaps = 6/154 (3%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILE 212
            R+ AI  + Y CGLR SE   +  ++    +  L  +  KG     + L    + A+ +
Sbjct: 33  VRDLAIFRVAYRCGLRASEIALIKLEDYNASKGELYCKRLKGSCNNTIRLDKKTKDALDK 92

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH--TLRHSFA 270
           Y  +   +L+ N ++ LF+  + +P++       +++   Y  +   +  H   L+H+ A
Sbjct: 93  Y--IHESNLSSNSEV-LFKSQKNRPISRQTLDYLMKKYCSYSNIHDKSKYHFHALKHTTA 149

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            HL  +  D++ +Q  LGH  ++ T+IY    +K
Sbjct: 150 VHLAESDMDIKELQWWLGHRSVTNTEIYFQFTTK 183


>gi|289524475|ref|ZP_06441329.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289502285|gb|EFD23449.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 137

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 14/125 (11%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL----KKSNSLPRAL 129
           F+    ++     SL+R  + I+S+ +YL     T E  +   + L     K   LPR L
Sbjct: 23  FLKAMASEGKSKASLQRYAAAIRSWNRYL-----TIEGWVDGEQWLPSLPSKEQKLPRIL 77

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +E +        L+ +  +   +  R+  +  L YGCGLR SE  SL  ++I     TLR
Sbjct: 78  SEGEI-----ERLISSCRDGSVLGGRDETLFELAYGCGLRASEVCSLALEDIDWRAGTLR 132

Query: 190 IQGKG 194
           + GKG
Sbjct: 133 VIGKG 137


>gi|258647236|ref|ZP_05734705.1| integrase [Prevotella tannerae ATCC 51259]
 gi|260852992|gb|EEX72861.1| integrase [Prevotella tannerae ATCC 51259]
          Length = 409

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 91/197 (46%), Gaps = 36/197 (18%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLT 177
           K+  + P+AL+ +    + D V+    H T  I AR+      L+ C  G   ++A+S+T
Sbjct: 217 KQKENTPKALSRESFEKIRDLVI--PEHRTSHILARD----LFLFACYTGTSYADAVSVT 270

Query: 178 PQNIM-DDQSTL--RIQGKGDKIR-IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
             N+  +D+ +L  + + K +++R  V LLP     I +Y D                  
Sbjct: 271 RNNLFTNDEGSLWLKYRRKKNELRACVKLLPEALTLIEKYRD------------------ 312

Query: 234 RGKP-LNPGVFQRYIRQLRRYLGLPLST----TAHTLRHSFATHL-LSNGGDLRSIQSIL 287
             +P L P ++   +R+L + L +        T H  RHSFA+ + L  G  + +I  +L
Sbjct: 313 DERPTLFPMLYHPNLRRLMKSLAVLADIKEDLTYHAGRHSFASLITLEVGVPIETICKML 372

Query: 288 GHFRLSTTQIYTNVNSK 304
           GH  L TTQ+Y  V  K
Sbjct: 373 GHSNLQTTQVYAKVTPK 389


>gi|167751365|ref|ZP_02423492.1| hypothetical protein EUBSIR_02351 [Eubacterium siraeum DSM 15702]
 gi|167655611|gb|EDR99740.1| hypothetical protein EUBSIR_02351 [Eubacterium siraeum DSM 15702]
          Length = 391

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-T 294
           KP++P      ++ L +   LPL    H LRH+FATH L+ G D +++  ILGH   S T
Sbjct: 298 KPMHPDYAYHRLKTLLKQAELPL-IRFHDLRHTFATHALAGGVDAKTLSGILGHTNASFT 356

Query: 295 TQIYTNVNS 303
              YT+V +
Sbjct: 357 LDTYTHVTT 365


>gi|325965385|ref|YP_004243290.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323471472|gb|ADX75156.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 368

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 76/175 (43%), Gaps = 14/175 (8%)

Query: 142 LLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG-DKIRI 199
           ++  S +  W  A R++ +L + Y  GLR +E   L   +   +    R    G  K+R 
Sbjct: 166 VIAASGKKGWQAAYRDAVMLKVAYSYGLRFNELRHLQTIDFATNPQARRFGKAGVCKVRF 225

Query: 200 ------VPLLPSVRKAILEYYDLCPFDLNLNIQ-----LPLFRGIRGKPLNPGVFQRYIR 248
                  P  P     + ++      D   N +     L LF   RG  +      R +R
Sbjct: 226 GKSRKGSPHKPRSVLTVFDWTAGVIEDWLANGRGTLDTLDLFPSERGGLICESTLLRRLR 285

Query: 249 QLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +    LGLP+     H+LR S+ATHLL +G D R +Q  +GH   STT IY  V+
Sbjct: 286 RYLAELGLPMDGLDLHSLRRSYATHLLEDGWDPRFVQHQMGHEHASTTGIYQFVS 340


>gi|320457972|dbj|BAJ68593.1| phage integrase [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 401

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 73/176 (41%), Gaps = 27/176 (15%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-----QGKGD-------------K 196
           R S  L LL G GLRI E   L  ++I  D   L +     QG  D              
Sbjct: 174 RLSIHLALLVG-GLRIGEVCGLQLRDIDLDHRLLYVRHSVTQGPDDLGEYRLDETKTPES 232

Query: 197 IRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRY 253
            R+VP+   V + I E+ D  CP   + +    LF  IR   + LNP   QR  R  R+ 
Sbjct: 233 HRVVPIPAPVCRLIREHIDRFCP---DRDPDTMLFHAIRHPERVLNPTTIQRQFRTARKR 289

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGD 308
           +      T H+LR + AT  +  GG LR     LGH  +    + Y  V  ++  D
Sbjct: 290 INRE-DVTFHSLRATHATMFMIQGGTLRETMDELGHVDVDVAVRCYQRVVPRHRRD 344


>gi|218130594|ref|ZP_03459398.1| hypothetical protein BACEGG_02183 [Bacteroides eggerthii DSM 20697]
 gi|217986938|gb|EEC53269.1| hypothetical protein BACEGG_02183 [Bacteroides eggerthii DSM 20697]
          Length = 88

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 33/46 (71%)

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           L L  + H  RHS+A+ LL NG D+ +I+S++GH  + TTQIYT++
Sbjct: 24  LILLLSFHVARHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHI 69


>gi|152973649|ref|YP_001338689.1| resolvase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|294496725|ref|YP_003560418.1| resolvase [Klebsiella pneumoniae]
 gi|150958431|gb|ABR80459.1| resolvase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|293339434|gb|ADE43988.1| resolvase [Klebsiella pneumoniae]
          Length = 260

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 30/44 (68%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T HT RHS+  H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYGMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231


>gi|153809442|ref|ZP_01962110.1| hypothetical protein BACCAC_03756 [Bacteroides caccae ATCC 43185]
 gi|149127902|gb|EDM19124.1| hypothetical protein BACCAC_03756 [Bacteroides caccae ATCC 43185]
          Length = 207

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 22/168 (13%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQS----------TLRIQGKGDKIRIVPLLPSVRKA 209
            ++ C  GL   +  +L  ++++ D +           L  + K   I  +PLLP V  A
Sbjct: 46  FIFACFTGLAFVDVSTLKKEDMVQDNNGDWWIRKGRIKLMHRRKASSICNIPLLP-VPLA 104

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           IL+ Y+  P  +     LP+       P N  +   Y++++  + G+  + T H  RH+F
Sbjct: 105 ILKKYENNPVCIKKGYCLPV-------PCNQKM-NSYLKEIADFCGIKKNITTHVARHTF 156

Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            T + L+N   L+ +  +LGH     TQ Y  V + +    M+ + +Q
Sbjct: 157 GTTITLANNVPLQDVSVMLGHASTRMTQHYARVMNASLKKSMIHVKEQ 204


>gi|161522422|ref|YP_001585351.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189348702|ref|YP_001941898.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
 gi|160345975|gb|ABX19059.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189338840|dbj|BAG47908.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
          Length = 575

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 128/320 (40%), Gaps = 70/320 (21%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +ERG  LS LT +    D   +  FL   T  +  I  +R     + R F     +  + 
Sbjct: 258 VERGRALSSLTTE----DALAYRAFLRRPTPHERWIGPVRPRGAPDWRPF-----SGALS 308

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSLPRALNEKQALTLVDNVL 142
            RS   +LS + +  ++L +++    +    + +R+ + ++    AL+   A T  + +L
Sbjct: 309 ARSAAYALSVLGAMFRWLIEQRYVLANPFAGVKVRDSRGAS----ALDTSHAFTEGEWLL 364

Query: 143 LHT---SHETKWIDA-----------RNSAILYLLYGCGLRISEALSLTPQNIMDD---Q 185
           + T     E +  D            R   IL   Y  GLR SE +  T  +I  D    
Sbjct: 365 VRTIADGLEFRKTDVPAAAWTPAAAQRLRFILDFGYATGLRASELVGATLGDIDTDAHGD 424

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP----- 240
           + L++ GKG K   V L P  R A+  Y         +  +LP+   +R +P  P     
Sbjct: 425 AWLKVVGKGSKAARVALPPLARTALDRYL--------VARRLPVT-PVRWRPDTPLISRL 475

Query: 241 --------------GVFQRYIRQLRRYLGL--PL------STTAHTLRHSFATHLLSNGG 278
                          V QR+  Q    +    P         + H +RH+ ATH L+ G 
Sbjct: 476 TEDGAAPITSVRLWKVMQRFFVQTADLVEADNPALAQKLRQASPHWMRHTHATHALARGA 535

Query: 279 DLRSIQSILGHFRLSTTQIY 298
           +L +++  L H  +STT IY
Sbjct: 536 ELTTVRDNLRHASISTTSIY 555


>gi|154175422|ref|YP_001408733.1| oxygen-independent coproporphyrinogen III oxidase [Campylobacter
           curvus 525.92]
 gi|112802099|gb|EAT99443.1| oxygen-independent coproporphyrinogen III oxidase [Campylobacter
           curvus 525.92]
          Length = 267

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 76/176 (43%), Gaps = 14/176 (7%)

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL   H+ KW       ++  L   G+R+SE +    ++++       I  KG K+R +
Sbjct: 104 CLLKDGHK-KWY-----FVVRFLAATGVRVSELVKFKAEHVV--LGYFDIYSKGAKMRRI 155

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
            +  S++ +  ++ D             +F     KP+ P      +++  R  GL  S 
Sbjct: 156 YIPKSLQASAKKWLDEIGIKSGF-----IFLNRFSKPITPRGIASELKKFARIYGLDQSV 210

Query: 261 T-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
              H+ RH FA + L++  D+  +  ++GH  + TT+IY    +    D +  + D
Sbjct: 211 IYPHSFRHLFAKNFLASCNDIAFLADLMGHTSIQTTRIYLRRTAAEQRDLIDSVID 266


>gi|218263866|ref|ZP_03477835.1| hypothetical protein PRABACTJOHN_03525 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222465|gb|EEC95115.1| hypothetical protein PRABACTJOHN_03525 [Parabacteroides johnsonii
           DSM 18315]
          Length = 354

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 22/150 (14%)

Query: 163 LYGC--GLRISEALSLTPQNIMDDQSTLR----IQGKGDKIRIVPLLPSVRKAILEYYDL 216
           L+ C   LRIS+ LSL  ++I+D  +  +    I  K     I+P+             L
Sbjct: 206 LFSCMTSLRISDILSLCWEDIVDYSAGGKCVHIITQKNKAEDIIPISEEA---------L 256

Query: 217 CPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
                N   +  +F+G+ R     P      +++  R  G+  + T H+ R +FAT   +
Sbjct: 257 GLIGYNSEKKGFVFKGLMRSWTQIP------MKEWIRSAGITKNITFHSYRRTFATLQAA 310

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            G D+R+IQSI+ H  ++TTQ Y  V   N
Sbjct: 311 AGTDIRTIQSIMAHKSITTTQRYIKVVDAN 340


>gi|152996970|ref|YP_001341805.1| phage integrase family protein [Marinomonas sp. MWYL1]
 gi|150837894|gb|ABR71870.1| phage integrase family protein [Marinomonas sp. MWYL1]
          Length = 283

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 10/139 (7%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYD-LC 217
           + L Y  G+RISE   L   ++      +++ QGKG + R V    S+++ +  Y+    
Sbjct: 124 MVLAYTTGMRISEVNELRVNDLDLTHHCIKVRQGKGQQDRYVLFPQSLQQVLGRYWQRYE 183

Query: 218 PFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
           P D+       +  G+ + +PL+    +   ++  +  G+      H+LRH+FA H L  
Sbjct: 184 PCDV-------VVYGLDKHRPLHSKYLRLETKEAAKRAGIQKCIRFHSLRHAFACHQLLA 236

Query: 277 GGDLRSIQSILGHFRLSTT 295
           G  L  +Q++LGH ++ TT
Sbjct: 237 GMPLLRLQALLGHKQIQTT 255


>gi|300776492|ref|ZP_07086350.1| mobilizable transposon [Chryseobacterium gleum ATCC 35910]
 gi|300502002|gb|EFK33142.1| mobilizable transposon [Chryseobacterium gleum ATCC 35910]
          Length = 429

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 16/138 (11%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           GLR  +   L  + I    + ++IQ +  K + V   P   +AI     LC        +
Sbjct: 276 GLRHCDIKRLKWKEIDVQSNRIKIQFRQKKTKGVEYTPISEQAI----HLCG-----TPR 326

Query: 227 LP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
           LP   +F  ++         +++++      G+    T H  RH+FAT  LS G D+ ++
Sbjct: 327 LPEQLVFENLQDSSWISRPLEKWVKSA----GITKHITFHCFRHTFATLQLSLGTDIYTV 382

Query: 284 QSILGHFRLSTTQIYTNV 301
             +LGH +++TTQ+Y  V
Sbjct: 383 SKMLGHSKVTTTQVYAKV 400


>gi|91791328|ref|YP_552278.1| phage integrase [Polaromonas sp. JS666]
 gi|91701209|gb|ABE47380.1| phage integrase [Polaromonas sp. JS666]
          Length = 557

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 117/305 (38%), Gaps = 50/305 (16%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +ERG +  +L +   D   +  FL   T     +   R  S  E R F        +  R
Sbjct: 251 VERGCALSSLATE--DAVAYRAFLRRPTPRSRWVGPPRPRSSPEWRPFAGG-----LSAR 303

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S    LS + +  ++L +++    +       +K     P  ++  ++ +  +  LL T 
Sbjct: 304 SAAHGLSVLSAMFRWLIEQRYVLANP---FSGIKVRGVQPAGMDTSRSFSDAEWALLRTV 360

Query: 147 HET-----KWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDDQST--LRIQGKGDK 196
            +       W  A    + ++L   Y  GLR SE +  T   I  D     L + GKG +
Sbjct: 361 ADGLEWSYGWQPAAAQRLRFVLDFAYATGLRASELVHATLGAIEVDHEERWLHVVGKGHR 420

Query: 197 IRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKP-LNPG----VFQRYIR 248
              V L P  R A+  Y     L       +  +PL   I G+  +N      V +R+  
Sbjct: 421 AGRVTLPPLARSALDRYLVQRGLPTTPQKWSPDIPLIGNIGGEAGINRARLWVVMKRFFA 480

Query: 249 ---------------QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
                          +LRR        T H +RH+ A+H L  G +L +++  L H  ++
Sbjct: 481 TVADILVEDNPTLAAKLRR-------ATPHWMRHTHASHALQGGAELTAVRDNLRHSSIA 533

Query: 294 TTQIY 298
           TT IY
Sbjct: 534 TTSIY 538


>gi|41409062|ref|NP_961898.1| hypothetical protein MAP2964c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41397421|gb|AAS05281.1| hypothetical protein MAP_2964c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 372

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 71/170 (41%), Gaps = 20/170 (11%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG--------------DKIRI 199
           AR++A+L  +Y  GLR +EA  L   ++  +    +  G G               K R 
Sbjct: 181 ARDAAVLKTIYAFGLRRTEASRLDLVDLRRNSQAPQFGGFGVVMVRYGKAPKGAPPKRRT 240

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYL 254
           V L+P +   ++E  D    ++      P     L+   RG  L+P          R   
Sbjct: 241 VLLVPEM-DWVVETLDQWLTEIRPRFSPPDRHPALWVTERGGRLSPRSINEAFVAARDDA 299

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            L  S   H LRHS  TH    G   R +Q  +GH   STT IYT+V+++
Sbjct: 300 RLDRSLNLHCLRHSAVTHWTEFGYPARFVQEQVGHAHASTTSIYTHVSNE 349


>gi|319641879|ref|ZP_07996554.1| integrase [Bacteroides sp. 3_1_40A]
 gi|317386498|gb|EFV67402.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 382

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 82/185 (44%), Gaps = 30/185 (16%)

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTL 188
           E+ ALT  +   L +    K +D  N   L  L GC  GL  S+   L     MDD  TL
Sbjct: 179 ERNALTSDELHKLLSFRPHKSVD--NHCRLIFLLGCFTGLAFSDLKKLR----MDDVYTL 232

Query: 189 R--------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                     + K     I+PLLP + + IL              +   FR     P N 
Sbjct: 233 SDGRRYISLCRTKTQNRCIIPLLP-IAEEILSIVS------GERTEGLFFREF---PTN- 281

Query: 241 GVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQI 297
             F R IR++    GLP  T  T+HT RH+FAT + L NG  +  +  +LGH  +STT++
Sbjct: 282 SHFNRKIREIILKAGLPPHTEATSHTARHTFATTICLENGLPIEIVSKMLGHRFISTTEL 341

Query: 298 YTNVN 302
           Y  V+
Sbjct: 342 YAKVS 346


>gi|153005509|ref|YP_001379834.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5]
 gi|152029082|gb|ABS26850.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5]
          Length = 381

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 20/188 (10%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----------GKGDKIRIVP 201
           +D R    + L    GLR+ E L+L   ++   +  +++Q           KG K R+VP
Sbjct: 198 VDPRTHVAVLLGGDAGLRLGEILALEWSDLDFTRGLMKVQRSECDGAVTLPKGGKPRVVP 257

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           +   ++ A+  +  L    +       L+ GI  +P+     +  I    R  GL     
Sbjct: 258 MTARLKAALHAHRHLKGPRI-------LYEGI--EPITKWPLKWLIDVAERRAGLRQGGR 308

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ-THPS 320
            H LRH+F + L +    + +I+ + GH  + TT  Y ++++    + +  + DQ T+ +
Sbjct: 309 VHILRHTFCSRLAARNVPMLTIKGLAGHQSVETTMRYLHLSASAPVEGIRALEDQGTNRA 368

Query: 321 ITQKDKKN 328
             Q  +KN
Sbjct: 369 QNQASEKN 376


>gi|331698984|ref|YP_004335223.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326953673|gb|AEA27370.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
          Length = 408

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 28/166 (16%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--------------GKGDKI 197
           I+ R    + +  GCGLR  E L L+P ++  ++  L+++               KG K 
Sbjct: 201 IEGRFQLAVVVGAGCGLRQGEILGLSPDDVDRERMVLQVRRQLRIVDRTLVFALPKGGKT 260

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYI 247
           R+VPL   V + I  + +   P  + L  Q P         L  G  G+  +  +F + I
Sbjct: 261 RVVPLSRGVLERITSHIEEHPPTPITLPWQDPAGEPTPVPMLMTGENGRLYSGDLFTKVI 320

Query: 248 RQ-LRRYLGLPLSTTA---HTLRHSFATHLLSNGGDLRSIQSILGH 289
            Q   R  G+     A   H LRH +A+ LLS G  ++ + + LGH
Sbjct: 321 WQGAFRSAGIEYRKRADGMHALRHFYASVLLSQGVSIKELAAYLGH 366


>gi|116254511|ref|YP_770347.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115259159|emb|CAK10274.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 331

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 123/313 (39%), Gaps = 26/313 (8%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           Q L  +R +S  T+ SY    +  L F    T +  +   +  L    I AF+    + +
Sbjct: 15  QRLARQRNVSPHTIASYRDTFKLLLKFAHRRTGKYPSALRLEDLDAELIVAFLDDLDSGR 74

Query: 83  -IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV--- 138
                +    L+ I+ F ++L   +      I      ++  ++P  +  K+ +  +   
Sbjct: 75  HASPATYNLRLTAIRGFFRFLAFEEPAYSGQI------QRVLAIPGKIGSKREVQFLLRN 128

Query: 139 -DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDK 196
               +L       W+  R+  +L      G+R+SE + L    + +   + +R  GKG K
Sbjct: 129 EIEAILSAPDRRTWVGRRDYVLLLTAVQTGMRLSELVGLDRSAVTIGTGAHIRCFGKGRK 188

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ----RYIRQLRR 252
            R  P+   +   +  + D  P   N N    LF  + G  ++P   Q    +Y+    +
Sbjct: 189 ERTTPITRMLNATLKAWLDEPPVG-NGNA---LFPTVHGGQMSPDAVQYLLAKYVLAASK 244

Query: 253 YLGLPLST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY--TNVNSKNGG 307
              L L +   + H LRHS A  LL  G D   I   LGH    +TQ Y   ++  K   
Sbjct: 245 GC-LSLRSKRVSPHVLRHSAAMELLDAGVDSTVISLWLGHESTRSTQPYLHAHLAIKEAA 303

Query: 308 DWMMEIYDQTHPS 320
              ++ +D+  P 
Sbjct: 304 LAKIDPFDKQSPG 316


>gi|167621620|ref|YP_001672128.1| integrase family protein [Caulobacter sp. K31]
 gi|167645969|ref|YP_001683632.1| integrase family protein [Caulobacter sp. K31]
 gi|167646192|ref|YP_001683855.1| integrase family protein [Caulobacter sp. K31]
 gi|167348399|gb|ABZ71134.1| integrase family protein [Caulobacter sp. K31]
 gi|167348622|gb|ABZ71357.1| integrase family protein [Caulobacter sp. K31]
 gi|167351743|gb|ABZ74469.1| integrase family protein [Caulobacter sp. K31]
          Length = 403

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 128/314 (40%), Gaps = 49/314 (15%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL---AFYTEEKITIQTIR 64
           EI    LL + + +L     +RGLS  ++       R+FL +    A     ++    + 
Sbjct: 102 EIARATLLADFETYLAK---QRGLSPRSIPHSVGFARRFLDYRFGKALPDPGRLCPADV- 157

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--S 122
            + + E     S RR + +         + ++ FL+YL  R  T  +  L++    K  +
Sbjct: 158 -IGFME-HVLASARRDKTVA--------THVRIFLQYLFARGATATNLALSVPKTAKRWA 207

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             +PR L+      ++ +V  +  H      AR+ A+L ++   GLR +E +++   +I 
Sbjct: 208 ARMPRHLSPDGVEAVLASVRDNHLH-----GARDYAMLLVMARLGLRAAEVVAIQLDDID 262

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRG--KPL 238
                L ++GKG     +PL   V  A+  Y   +  P          LF   R   +P 
Sbjct: 263 WRAGELMVRGKGKLHDRLPLTAEVGDALSRYLREERGPATCRT-----LFVAHRAPHRPF 317

Query: 239 NPGVFQRYI----------RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
             G     I          + +  Y+G      +H LRHS AT L++ G  L  +  +L 
Sbjct: 318 KDGTIVNAILKDALKATGQKPVTPYVG------SHLLRHSLATQLVNTGASLDEVGDMLR 371

Query: 289 HFRLSTTQIYTNVN 302
           H   S+T IY  ++
Sbjct: 372 HRSRSSTMIYARLD 385


>gi|218129371|ref|ZP_03458175.1| hypothetical protein BACEGG_00948 [Bacteroides eggerthii DSM 20697]
 gi|317475337|ref|ZP_07934602.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|217988441|gb|EEC54763.1| hypothetical protein BACEGG_00948 [Bacteroides eggerthii DSM 20697]
 gi|316908504|gb|EFV30193.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 405

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 26/153 (16%)

Query: 162 LLYGC--GLRISEALSLTPQNI---MDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD 215
            ++ C  GL  ++  +L P++I    + +  +RI+  K D    +PL P V + ILE Y+
Sbjct: 244 FIFSCMTGLAYADTRALHPRHIGKTSEGRRYIRIRRAKTDVEAFIPLHP-VAEQILELYN 302

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNP----GVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
                              GKP+ P     V    +  +   LG+  + + H  RHSF T
Sbjct: 303 TTD---------------EGKPVFPLPVRDVLWYEVHGMGVALGMRENLSYHMARHSFGT 347

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             L+ G  + SI  ++GH  + +TQ+Y  V  +
Sbjct: 348 LTLTAGIPIESIARMMGHTNIDSTQVYAQVTDR 380


>gi|94266129|ref|ZP_01289843.1| Phage integrase [delta proteobacterium MLMS-1]
 gi|93453304|gb|EAT03747.1| Phage integrase [delta proteobacterium MLMS-1]
          Length = 465

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 31/192 (16%)

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            + +N   R L E +A  L   +    + + K+I       L LL GC  R SE L+   
Sbjct: 285 FEANNGRERYLTEDEAARLKAALESSENTQLKYI-----VSLLLLLGC--RKSELLNSRW 337

Query: 179 QNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
           ++    + + RI   K  K R VPL  +  + +     L P+ +                
Sbjct: 338 EDFDLARRSWRIPLSKSGKARYVPLSTAALEVLASIPRLSPYVVP--------------- 382

Query: 238 LNPGVFQRYIRQLRRY------LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
            NP   Q ++   R +       GLP     H LRHSFA+ L+++G  +  +  +LGH +
Sbjct: 383 -NPKTLQPFVSVFRSWDTARKKAGLP-DVRMHDLRHSFASFLVNSGRSIYEVSQLLGHSQ 440

Query: 292 LSTTQIYTNVNS 303
           L TTQ Y+++++
Sbjct: 441 LKTTQRYSHLSN 452


>gi|296269704|ref|YP_003652336.1| integrase family protein [Thermobispora bispora DSM 43833]
 gi|296092491|gb|ADG88443.1| integrase family protein [Thermobispora bispora DSM 43833]
          Length = 317

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 65/150 (43%), Gaps = 18/150 (12%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK------ 208
           R+ A+L LLY  G R +E  +LT  +      +LR++GKGDK R V L  +  +      
Sbjct: 152 RDGALLALLYSTGCRRAEVAALTLADFDPWDRSLRVRGKGDKERFVYLTVAAAERLDRWL 211

Query: 209 AILEYYD---LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           A+    D    CP +    ++L    G         +     R+L          T H  
Sbjct: 212 AVRGRADGPLFCPINKAGRLRLAHMTGQ-------AIADIVTRRL--TAAGAAKRTPHDF 262

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           R +F   LL  G DL + Q+++GH   +TT
Sbjct: 263 RRTFIGELLDAGVDLATAQALVGHASPATT 292


>gi|91782176|ref|YP_557382.1| putative bacteriophage integrase [Burkholderia xenovorans LB400]
 gi|91686130|gb|ABE29330.1| Putative bacteriophage integrase [Burkholderia xenovorans LB400]
          Length = 444

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 70/168 (41%), Gaps = 34/168 (20%)

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLP 204
           +  ++D    A+L  L G GLR  E + L   ++  D   +R++    KGD+ R VP+  
Sbjct: 266 DAAYVDHVKPAVLVAL-GTGLRRGEQMQLQWPDVDFDNERIRVRKATSKGDRTRYVPMCD 324

Query: 205 SVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPG-VFQRYIRQLRRYLGLPL---- 258
            V + +  +    C                   P+ P  VF   + ++RR +G P     
Sbjct: 325 EVIQVLKAWKAQTC-----------------SGPVQPILVFGNALGEVRREIG-PYRHVL 366

Query: 259 ------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                 S T H LRHSFAT L  +G  +  I   LGH  L  T  Y +
Sbjct: 367 AEAKIDSFTWHDLRHSFATRLAQHGVPIERIGKWLGHSSLQQTMRYAH 414


>gi|291525337|emb|CBK90924.1| Site-specific recombinase XerC [Eubacterium rectale DSM 17629]
          Length = 377

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 8/101 (7%)

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           + +R +P+   +   + +YY       N +++   +   + +P++P  +Q       R  
Sbjct: 263 NSLREIPISDFIYDKLSDYY-------NTSMKGDSYFLKKNQPMDPRTYQNKFHIYIREA 315

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           G+  +T  H LRH+FAT+ +S+G D +S+  ILGH  ++ T
Sbjct: 316 GIG-NTHFHALRHTFATNCISSGADAKSVSEILGHSNVNIT 355


>gi|262040800|ref|ZP_06014029.1| integrase/recombinase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041885|gb|EEW42927.1| integrase/recombinase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 218

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 7/112 (6%)

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET- 149
           +L G+      L+   + +  +I  +RNL+ S  LPR     +AL   +   L  + ET 
Sbjct: 106 ALKGVAKEAWMLRLMDVESFQHIRAVRNLRGSR-LPRG----RALPPEEIRALFRACETD 160

Query: 150 -KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
              I  R++A+L ++ GCGLR SEA+ L   +I+     LR+ GKG+K R+ 
Sbjct: 161 KSSIGVRDAAMLAIILGCGLRRSEAVGLDFSDIVTHDRALRVLGKGNKERLA 212


>gi|219667494|ref|YP_002457929.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
 gi|219537754|gb|ACL19493.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
          Length = 317

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 5/162 (3%)

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRI 199
           +LL   +   + + RN  I+  L G G+R  E  S+  ++I    S L + + K  K R 
Sbjct: 132 ILLKKPNMKSFAEYRNWVIINFLLGTGVRALELRSIRIKDIDLKMSMLIVPRTKNGKQRY 191

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +P+  S+ K + +Y D    +   +    LF    G+ L     Q  I +  +  G+   
Sbjct: 192 IPISKSLNKILTDYLDYRKAESEEDF---LFCNEFGQYLPRTTLQIGITKYCKKRGVN-K 247

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            + H  RH+FA   + N G L  +Q ILGH  L     Y N+
Sbjct: 248 YSLHLFRHTFANMWIVNNGSLFILQKILGHASLKQVNHYANL 289


>gi|270296259|ref|ZP_06202459.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273663|gb|EFA19525.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 418

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 14/108 (12%)

Query: 196 KIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K + V  +P   +A    Y+LC  P +     +L +F G+     +P    R +++    
Sbjct: 303 KTKGVEYMPISEQA----YNLCGEPKEG----ELLVFAGL----PDPSWINRPVKKWIEA 350

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            G+    T H  RHS+AT  L+ G D+ ++  +LGH  + TTQ+Y  V
Sbjct: 351 AGITKHITFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKV 398


>gi|255012236|ref|ZP_05284362.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313150077|ref|ZP_07812270.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313138845|gb|EFR56204.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 403

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 66/152 (43%), Gaps = 25/152 (16%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDL 216
            ++GC  G+   +  +LT  N++    +L I     K  I   V L+ S  K I  Y   
Sbjct: 248 FIFGCLTGISFIDIKNLTTDNLVTINGSLWISSVRQKTNIPFRVKLMESACKIIDRYE-- 305

Query: 217 CPFDLNLNIQLPLFRGIRGKPL----NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
            PF              RGK L      G     ++Q+    G+    T H  RHS+A  
Sbjct: 306 -PFR-------------RGKRLFNFYRNGWTNVLLKQIAAECGINKHLTFHMSRHSYAVM 351

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            +SNG  + S+  +LGH +++TTQ Y  + ++
Sbjct: 352 AISNGMPIESVSKVLGHTKITTTQHYAKITTE 383


>gi|126725709|ref|ZP_01741551.1| Integrase [Rhodobacterales bacterium HTCC2150]
 gi|126704913|gb|EBA04004.1| Integrase [Rhodobacterales bacterium HTCC2150]
          Length = 189

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 11/170 (6%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           LL  ++      AR++ +L   + CGLRI E  +L   +I+D   T+R +   D  RI  
Sbjct: 15  LLDVTNSCSRYAARDATMLLFTHLCGLRIGEVAALRFDDILDANGTVRDEMTLDAARIKS 74

Query: 202 LLPSVRKAILEYY---DLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYL 254
                RK  L       LC +  +LN Q P    LF   +    +     +++++L    
Sbjct: 75  --KRARKIFLPKQMQRQLCEYVNSLNKQ-PLHGYLFSTQKQAHFSANTATQHLQRLYARA 131

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           G+    T+H+ R  + T L   G  +  +  + GH  + TTQ Y  VN +
Sbjct: 132 GIA-GATSHSGRRIWLTALSQKGVSVFVLADMAGHRNIQTTQRYVTVNDE 180


>gi|323172233|gb|EFZ57871.1| integrase [Escherichia coli LT-68]
          Length = 347

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 20/143 (13%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           ++ +    G R  EA++LT   +   + T  ++ KG K R +P+   +      Y ++  
Sbjct: 197 VVKICLSTGARWREAVNLTRSQVTKYRITF-VRTKGKKNRSIPISKEL------YEEIVA 249

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
            D           G   K      FQ      R  + LP     H LRH+FA H + +GG
Sbjct: 250 LD-----------GF--KLFTDCYFQFLAVMDRTSIVLPRGQLTHVLRHTFAAHFMMSGG 296

Query: 279 DLRSIQSILGHFRLSTTQIYTNV 301
           ++ ++Q ILGH  +  T  Y ++
Sbjct: 297 NILALQKILGHHDIKMTMRYAHL 319


>gi|290473457|ref|YP_003466324.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii
           SS-2004]
 gi|289172757|emb|CBJ79528.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii
           SS-2004]
          Length = 197

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 65/149 (43%), Gaps = 1/149 (0%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILEY 213
           R+  +LYL Y  GLR+SE  SL   +I     T+ I+   +      P+  + ++ IL++
Sbjct: 25  RDQCLLYLTYIHGLRVSELTSLKVSDIDIAGKTIYIKRLKNGFSTTHPISKTEKELILKW 84

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
             +   +      L LF   +G  L+       + +     GL +    H LRHS    L
Sbjct: 85  LKIRNNNSVYCASLWLFPSRKGGKLSRQWVHVLMGRYGEQAGLSIRLHPHKLRHSCGFEL 144

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            + G D R IQ  LGH  +  T  YT  N
Sbjct: 145 ANQGLDTRLIQDYLGHRNIRHTMHYTASN 173


>gi|262273295|ref|ZP_06051110.1| integrase [Grimontia hollisae CIP 101886]
 gi|262222668|gb|EEY73978.1| integrase [Grimontia hollisae CIP 101886]
          Length = 346

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 40/83 (48%)

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
           P    L ++L  +    G P+ P       R  + +  LP     H  RH+FA+H + +G
Sbjct: 242 PISEELYLELIRYDEEHGLPVQPVRKMLEKRLAKWFPRLPDGQKTHVFRHTFASHFMQHG 301

Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300
           GD+ ++Q ILGH  +  T  Y +
Sbjct: 302 GDILTLQRILGHANIQMTMKYAH 324


>gi|298531262|ref|ZP_07018662.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508872|gb|EFI32778.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 394

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 17/149 (11%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA--ILE--YY 214
           I+  L   G R SEA++L  Q +   +    I  + +K ++  ++P  R A  +LE    
Sbjct: 230 IIEFLILTGARRSEAVNLPWQELDMAKGVWIIPAERNKAKVKKVIPLSRGALNVLERRKE 289

Query: 215 DLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
           + C +         +F     G+P+    F     ++R+  G+P     H LRH+FA+ L
Sbjct: 290 NGCEY---------VFPNPETGEPMK--HFHGTWDRIRKKAGIP-DVRIHDLRHNFASLL 337

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +++G  L  +Q +LGH  +STTQ Y +++
Sbjct: 338 INSGRSLYEVQKLLGHADISTTQRYAHLS 366


>gi|254303662|ref|ZP_04971020.1| possible bacteriophage integrase/recombinase [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148323854|gb|EDK89104.1| possible bacteriophage integrase/recombinase [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 329

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 108/249 (43%), Gaps = 21/249 (8%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK----SFLKYLKKRKITTESNILNM 116
           ++I+ ++  ++R ++     QK G+ S K ++  I+    SF  +L++     +S +  +
Sbjct: 88  KSIKHITTNDLREYLD--NYQKEGNAS-KITIDNIRRIFSSFFAWLEEEDHILKSPVRRI 144

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             +K    +    +++    + DN              R+ AI+ +L   G+R+ E + L
Sbjct: 145 HKVKTGTVVKETYSDEAMEIMRDNCK----------SLRDLAIIDMLASTGMRVGELVKL 194

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
             ++I  +     + GKGDK R V    +  K  L  Y     D N  + + L +    K
Sbjct: 195 NIEDIDFEGRECVVFGKGDKERKV-YFDARTKIHLHNYLKTRDDDNSALFVSLLKP--HK 251

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L     +  +RQL R L +      H  R + AT  +  G  +  +Q +LGH ++ TT 
Sbjct: 252 RLQISGVEIMLRQLGRKLNIT-KVHPHKFRRTLATKAIDKGMPIEQVQQLLGHQKIDTTL 310

Query: 297 IYTNVNSKN 305
            Y  V+  N
Sbjct: 311 QYAMVSQNN 319


>gi|327184452|gb|AEA32897.1| putative integrase [Lactobacillus amylovorus GRL 1118]
          Length = 326

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 12/155 (7%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKG--DKIRIVPLLPSVRKAI 210
           R+ A+L  +   GLR  E       +I    + + L +QGKG  +K  ++ +   V  AI
Sbjct: 153 RDYAMLVTMLTMGLRTIEVSRADIDDIRTKGNMTVLYVQGKGHEEKDDLIRMPQHVESAI 212

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-----TAHTL 265
            +Y  +   +   ++  PLF        N  +  R IR++ +   +         TAH+ 
Sbjct: 213 RDYLSVRKAN---DLSKPLFVSTSNHNANGRMTTRSIRRIVKTAFISAGYDSPRLTAHST 269

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           RH+ AT  L NG  L+  Q +L H  + TT+IY +
Sbjct: 270 RHTAATLSLLNGATLQQTQELLRHRNIGTTEIYAH 304


>gi|148243781|ref|YP_001220021.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|325113222|ref|YP_004277168.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|325113260|ref|YP_004277206.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|326402545|ref|YP_004282626.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|146400344|gb|ABQ28879.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|325049406|dbj|BAJ79744.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|325052689|dbj|BAJ83026.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|325052727|dbj|BAJ83064.1| phage integrase family protein [Acidiphilium multivorum AIU301]
          Length = 403

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 99/242 (40%), Gaps = 46/242 (19%)

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNV 141
           G R  K   + ++ FL+YL     T  +  L++    K     LPR L+ +    ++  V
Sbjct: 167 GARRDKTVATHVRIFLQYLFGSGATATNLALSVPRAAKRWGARLPRHLSPEGVEAVLACV 226

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
                H      AR+ A+L ++   GLR +E +++   +I      L ++GKG     VP
Sbjct: 227 RDSPRH-----GARDYAMLLIMARLGLRAAEVIAIQLDDIDWRAGELLVRGKGKLHDRVP 281

Query: 202 LLPSVRKAILEYY------DLC------------PFDLNLNIQLPLFRGIRG---KPLNP 240
           +   V +A+  Y         C            PF  +  +   L   ++    KP+ P
Sbjct: 282 ISAEVGEALCRYLREERGPASCRTMFVTHRAPYRPFKDSQIVNAVLKDALKATGQKPVTP 341

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                       Y+G      +H LRHS AT L+++G  L  +  +L H   ++T IY  
Sbjct: 342 ------------YVG------SHLLRHSLATQLVNSGASLDEVGDVLRHRSRTSTMIYAR 383

Query: 301 VN 302
           ++
Sbjct: 384 LD 385


>gi|84393354|ref|ZP_00992114.1| Integrase [Vibrio splendidus 12B01]
 gi|84376070|gb|EAP92958.1| Integrase [Vibrio splendidus 12B01]
          Length = 340

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 21/143 (14%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           ++ L    G R  E+ +LT   +   + T   + KG K R VP+ P       E YD+  
Sbjct: 202 VIKLCLATGGRFKESATLTGAQLTKYKVTF-TKTKGKKNRSVPISP-------ELYDV-- 251

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
                     +++   G PL    +    R + +++       AH LRH+FA++ + NGG
Sbjct: 252 ----------IYKEGSG-PLFSIGYSTVYRFIVKHIPRLSQQAAHVLRHTFASYYMMNGG 300

Query: 279 DLRSIQSILGHFRLSTTQIYTNV 301
           ++ ++Q ILGH  +  T  Y ++
Sbjct: 301 NIIALQRILGHSDIKQTMRYAHL 323


>gi|213691872|ref|YP_002322458.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523333|gb|ACJ52080.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 447

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 73/176 (41%), Gaps = 27/176 (15%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-----QGKGD-------------K 196
           R S  L LL G GLRI E   L  ++I  D   L +     QG  D              
Sbjct: 220 RLSIHLALLVG-GLRIGEVCGLQLRDIDLDHRLLYVRHSVTQGPDDLGEYRLDETKTPES 278

Query: 197 IRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRY 253
            R+VP+   V + I E+ D  CP   + +    LF  IR   + LNP   QR  R  R+ 
Sbjct: 279 HRVVPIPAPVCRLIREHIDRFCP---DRDPDTMLFHAIRHPERVLNPTTIQRQFRTARKR 335

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGD 308
           +      T H+LR + AT  +  GG LR     LGH  +    + Y  V  ++  D
Sbjct: 336 INRE-DVTFHSLRATHATMFMIQGGTLRETMDELGHVDVDVAVRCYQRVVPRHRRD 390


>gi|150006166|ref|YP_001300910.1| transposase [Bacteroides vulgatus ATCC 8482]
 gi|149934590|gb|ABR41288.1| transposase [Bacteroides vulgatus ATCC 8482]
          Length = 308

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 25/156 (16%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           +Y+    GLRI E  +L   +I   + T+ +    ++I I+       + ++      P 
Sbjct: 133 IYISLCTGLRIGEVCALKWSDINVSEGTITVNRTIERIYIIDGTKKHTELVIN----TPK 188

Query: 220 DLNLNIQLPLFRGIRG--KPL------------------NPGVFQRYIRQLRRYLGLPLS 259
             N   ++P+ + +    KPL                   P  ++ Y  +L   LG+P  
Sbjct: 189 TQNSCREIPMTKELLAMVKPLKKVVNEDFYVLTNDEYPTEPRTYRNYYGKLMEKLGIP-K 247

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
              H LRHSFAT  +  G D +++  +LGH  +STT
Sbjct: 248 LKYHGLRHSFATRCIEAGCDYKTVSVLLGHSNISTT 283


>gi|120435585|ref|YP_861271.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|120435707|ref|YP_861393.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|117577735|emb|CAL66204.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|117577857|emb|CAL66326.1| phage integrase family protein [Gramella forsetii KT0803]
          Length = 330

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 15/154 (9%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPL---LPSVRKAILEYYDLC 217
           LLY  G+R+ EA++L  +++  ++  L ++  K  K RI+P+   L SV +  LEY +L 
Sbjct: 153 LLYCTGIRMGEAIALKDEDVNLEEGYLLVRDSKNGKQRIIPISQSLVSVCREYLEYRNLL 212

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA----THL 273
           P     +     F  + G      V   + + L R  G+P S   H LRH+FA      +
Sbjct: 213 PSRKTSSGY--FFVKVNGHKCGQSVRAWFKKCLDR-AGIPGSARLHDLRHTFAVTSLAQM 269

Query: 274 LSNGGDLRS----IQSILGHFRLSTTQIYTNVNS 303
             +G DL +    + + LGH  +  T  Y  + S
Sbjct: 270 AESGIDLYASLPILSNYLGHQSIGATNHYVRLTS 303


>gi|48477839|ref|YP_023545.1| site-specific integrase/recombinase [Picrophilus torridus DSM 9790]
 gi|48430487|gb|AAT43352.1| hypothetical site-specific integrase/recombinase [Picrophilus
           torridus DSM 9790]
          Length = 119

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           P+       Y++++++   L     AH  RH++A +LL +G D+ +I+ +LGH  L TTQ
Sbjct: 19  PMKRQAVDLYLKRMQK--DLKFKIHAHKFRHTYAKNLLRSGVDIETIRIMLGHEDLGTTQ 76

Query: 297 IYTNVNSKNGGDWMMEI 313
           IYT + +    + M  I
Sbjct: 77  IYTVLGADEALERMKRI 93


>gi|54303342|ref|YP_133335.1| bacteriophage integrase [Photobacterium profundum SS9]
 gi|46916772|emb|CAG23535.1| Hypothetical bacteriophage integrase [Photobacterium profundum SS9]
          Length = 326

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 97/241 (40%), Gaps = 36/241 (14%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRS---LSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           Q++   I  + S R +  I  R++ +    LSG+  F + +   +   E  I+ +R LK+
Sbjct: 102 QVTKKRIIDYRSDRLSSGISPRTINKEVALLSGV--FTQMINAEEYHHEHPIIGLRKLKE 159

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
                  L+  +    +  +L H S + K        I  +    G R +EA  L  +N+
Sbjct: 160 RKQEMAFLSSSE----ISFLLQHASGDMK-------KIAKICLATGARWNEANDLRAENV 208

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
              + T      G+  R  P+         E +D    + +  +  P +           
Sbjct: 209 TPYRVTFVATKNGNN-RTTPISK-------ELFDEISSEKSGRLFTPCY----------D 250

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            F  + + L     LP     H LRH+FA+H + NGG++ ++Q  LGH  +  T  Y + 
Sbjct: 251 KFYLFFKSLN--FNLPKGQAVHVLRHTFASHFMQNGGNILTLQKALGHATIQQTMEYAHF 308

Query: 302 N 302
           +
Sbjct: 309 S 309


>gi|158314368|ref|YP_001506876.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158314559|ref|YP_001507067.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158109773|gb|ABW11970.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158109964|gb|ABW12161.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 355

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 73/172 (42%), Gaps = 26/172 (15%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNI---------MDDQSTLRIQGKGDKIRIVPLLP 204
           ARN     L+   GLR++EA SL   +I         +  +      G G + R+VPL+ 
Sbjct: 163 ARNYTAARLMAEVGLRVNEARSLDLADIRWELGRFGKLHVRHGKGAHGSGPRERMVPLIN 222

Query: 205 SVRKAILEYYD--LCPFDLNLNIQ-LPLF----RGIRGKP-------LNPGVFQRYIRQL 250
              + +  Y +     FD +      PLF    R + G P       L  G+       L
Sbjct: 223 HAGQTLRWYVEDVWGHFDEDHTRHGAPLFPSERRNVDGAPARVGYDALRSGLAAAAAEHL 282

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             +       T H LRH  A+ +  NG DL SIQ +LGH  ++TT  Y +V+
Sbjct: 283 PAWKS---RLTPHILRHYCASQMYLNGIDLVSIQEMLGHSWVATTMRYVHVH 331


>gi|254497030|ref|ZP_05109859.1| putative integrase/recombinase XerD [Legionella drancourtii LLAP12]
 gi|254353746|gb|EET12452.1| putative integrase/recombinase XerD [Legionella drancourtii LLAP12]
          Length = 233

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 15/156 (9%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAI---LE 212
           I+ +L   G+R+SE +++   +I  D +  RI   QGKG K R+VP  P+ ++ +   L+
Sbjct: 76  IVKVLLYTGIRVSELINIQLCDI--DLTNCRIKINQGKGKKDRVVPFSPAFKETLALHLK 133

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
            Y       N N       G R    + G+ ++ + +  R  G+  S + H LRH   T 
Sbjct: 134 QYK------NENRMFLFESGFRRHYTDRGI-RKILMRYTRLAGIERSISPHKLRHFLFTW 186

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           L     D   IQ   GH +  + +IY+ ++  +  D
Sbjct: 187 LKKQNIDDAFIQPYSGHAKRDSLEIYSKLSLADAQD 222


>gi|91786615|ref|YP_547567.1| phage integrase [Polaromonas sp. JS666]
 gi|91695840|gb|ABE42669.1| phage integrase [Polaromonas sp. JS666]
          Length = 311

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 79/173 (45%), Gaps = 24/173 (13%)

Query: 152 IDARNSAI-LYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           IDA  S   L LLY  GLRISEAL+L   ++ ++D+     + K  K R+VP+   + + 
Sbjct: 123 IDAHTSRTQLLLLYATGLRISEALNLNLADVDLNDRVLYVRRSKFYKTRLVPIGTDLTQV 182

Query: 210 ILEY----YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL------RRYLGLPLS 259
           + EY    Y   P D +     P     RG+ ++    ++  RQ+      RR+ G    
Sbjct: 183 LREYARRRYKRSPLDPD----APFLLTSRGERVSRAGAEQAFRQMRSQAKVRRHDGGRYQ 238

Query: 260 TTAHTLRHSFATHLL----SNGGD----LRSIQSILGHFRLSTTQIYTNVNSK 304
              H LRH+ A   L      G D    L  + + LGH  +S TQ Y ++  +
Sbjct: 239 PRLHDLRHTAAVTRLVRWYREGVDVQRLLPQLATYLGHVHISGTQCYLSMTPE 291


>gi|300781823|ref|YP_003739058.1| resolvase [Erwinia billingiae Eb661]
 gi|299060089|emb|CAX53279.1| resolvase [Erwinia billingiae Eb661]
          Length = 237

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 75/173 (43%), Gaps = 36/173 (20%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-------TL--RIQGKG-----DKI- 197
           D R   +   L+  G RI+EAL +TP+++  D         TL  R +G+G     +K+ 
Sbjct: 50  DERQRMLFAFLWNTGARITEALMVTPEDLQLDGPRPFVRLRTLKQRSRGRGRPAKDEKVA 109

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY---- 253
           R+VPLL               F   L+  L  FR  R  PL     +     L++     
Sbjct: 110 RVVPLLDGA------------FVRELHRYLATFRPGRRTPLFAVTRKTAWSWLQQATERA 157

Query: 254 --LGLPLSTTA---HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              G+  + T     TLRHSFA HL  N    + +Q+ +GH R  +T+ Y  V
Sbjct: 158 GAAGIAFAVTPVSPRTLRHSFAMHLFLNHVPPKVVQTYMGHERYESTEQYLKV 210


>gi|255994620|ref|ZP_05427755.1| site-specific recombinase, phage integrase family [Eubacterium
           saphenum ATCC 49989]
 gi|255993333|gb|EEU03422.1| site-specific recombinase, phage integrase family [Eubacterium
           saphenum ATCC 49989]
          Length = 375

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 20/196 (10%)

Query: 120 KKSNSLPRALNEKQALTLVDNVL----LHTSHETKW--IDARNSAILYLLYGCGLRISEA 173
           K+S    +AL + + L ++D V     L  + +  W     R+ AIL      GLR+ E 
Sbjct: 162 KQSEREIKALEDNEVLRMLDIVTTGDGLTGAQKRYWKVTKYRDKAILTFFLTYGLRLQEL 221

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLF 230
             L   +    +   +I  K +K  I+ L  +  +A+ +Y      D      +    LF
Sbjct: 222 WQLNLSSFNFQREEFKIYRKRNKESIMHLNGTTAEALRDYLINERNDEKAKKYIDDDALF 281

Query: 231 RGIRGKPLNPGVFQRYIRQL-RRYLGLPLSTTAHT------LRHSFATHLLSNGGDLRSI 283
             ++ K +     +R IR+L ++Y  L + TT H       LR + AT L+  G  +  +
Sbjct: 282 LSLQHKRIT----KRQIRELVKKYTSLAIGTTQHNGYSPHKLRATTATSLIGRGESIYDV 337

Query: 284 QSILGHFRLSTTQIYT 299
           Q +LGH +++TTQ+Y 
Sbjct: 338 QLLLGHEQVTTTQLYA 353


>gi|198277079|ref|ZP_03209610.1| hypothetical protein BACPLE_03287 [Bacteroides plebeius DSM 17135]
 gi|198269577|gb|EDY93847.1| hypothetical protein BACPLE_03287 [Bacteroides plebeius DSM 17135]
          Length = 418

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 14/108 (12%)

Query: 196 KIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K + V  +P   +A    Y+LC  P +     +L +F G+     +P    R +++    
Sbjct: 303 KTKGVEYMPISEQA----YNLCGEPKEG----ELLVFAGL----PDPSWINRPVKKWIEA 350

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            G+    T H  RHS+AT  L+ G D+ ++  +LGH  + TTQ+Y  V
Sbjct: 351 AGITKHITFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKV 398


>gi|260910292|ref|ZP_05916967.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260635594|gb|EEX53609.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 419

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 27/170 (15%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP-----LLPSVRKAILEYY 214
            ++ C  GL IS+  +L  +NI+ ++  L I  KG +++  P     +LP    AI+E Y
Sbjct: 250 FVFSCFSGLAISDVRNLREENIVLEEGELCI--KGSRMKTNPPYRVQVLPPAW-AIMERY 306

Query: 215 --DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                 F  ++     +  G+                ++R +G+    T H  RH+F+T 
Sbjct: 307 IGKRAGFIFDVPTTDIILNGMHF--------------IQRNIGMEGPLTFHKARHTFSTT 352

Query: 273 L-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           + LSNG  + ++  +LGH  + TTQIY  +      + M  + D+ H + 
Sbjct: 353 ICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQEDMTALTDREHSAF 402


>gi|167617449|ref|ZP_02386080.1| Fels-2 prophage protein [Burkholderia thailandensis Bt4]
          Length = 205

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 16/160 (10%)

Query: 149 TKWIDARNSAILYLLYGC---GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           T   + RN  +L +   C   G R  EA  L    I   Q    ++ K  K R VP+   
Sbjct: 33  TALAEGRNIHVLLISKVCLATGARWGEAEGLRRTQIKGGQIQF-VKTKSSKARSVPITDV 91

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           + + ++ ++     +   +    LF        +   F+  +   R  + LP     H L
Sbjct: 92  LERELIAHFG----NYGDSDTGRLFEA------SSSAFREAVE--RAGVVLPDGQLTHVL 139

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           RH+FA+H + NGG++ ++Q  LGH  L+ T  Y +++ ++
Sbjct: 140 RHTFASHFMMNGGNILALQRALGHHSLTMTMRYAHLSPEH 179


>gi|298375519|ref|ZP_06985476.1| mobilizable transposon, int protein [Bacteroides sp. 3_1_19]
 gi|298268019|gb|EFI09675.1| mobilizable transposon, int protein [Bacteroides sp. 3_1_19]
          Length = 347

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 21/148 (14%)

Query: 163 LYGC--GLRISEALSLTPQN--IMDDQS-TLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           L+ C  GLRIS+ L+L  ++  I  DQ   LRI+ +  K +    LP   +A    Y+LC
Sbjct: 204 LFACLTGLRISDILNLQWEDFAIAPDQGYCLRIRTQ--KTQTEATLPISYEA----YELC 257

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
                +     +F+G++   +N       ++   +  G+    T H  RHS+A   +S G
Sbjct: 258 ----GMPDTGKVFKGLKRSMINYP-----LKNWLKKAGITKPITFHGFRHSYAVIQISLG 308

Query: 278 GDLRSIQSILGHFRLSTTQIYTN-VNSK 304
            D+ ++  +L H  +STTQIY + VN K
Sbjct: 309 TDIYTVSKMLTHKNVSTTQIYADLVNVK 336


>gi|254160925|ref|YP_003044033.1| integrase for prophage [Escherichia coli B str. REL606]
 gi|253972826|gb|ACT38497.1| integrase for prophage [Escherichia coli B str. REL606]
 gi|253977046|gb|ACT42716.1| integrase for prophage [Escherichia coli BL21(DE3)]
          Length = 314

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 28/186 (15%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--------TKWIDARNSAILYLLYGCGLRISEALS 175
           S P  L   +  T+ +  +   +HE         K  D   + ++ +    G R  EA++
Sbjct: 130 SYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICLSTGARWREAIN 189

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           LT   +   + T  ++ KG K R +P+   + + I+    L  F+               
Sbjct: 190 LTRSQVTKYRITF-VRTKGKKNRSIPISKELYEEIMA---LDGFNF-------------- 231

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  FQ      +  + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T
Sbjct: 232 --FTDCYFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMT 289

Query: 296 QIYTNV 301
             Y ++
Sbjct: 290 MRYAHL 295


>gi|218458041|ref|ZP_03498132.1| site-specific tyrosine recombinase XerC [Rhizobium etli Kim 5]
          Length = 58

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/47 (55%), Positives = 30/47 (63%)

Query: 4  NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL 50
          N L  I    L+ ER  WL+NL  ER LS+ TL +YE DTRQFL FL
Sbjct: 2  NELLVIADPRLMAERAAWLENLARERRLSEHTLDAYERDTRQFLTFL 48


>gi|118477873|ref|YP_895024.1| phage integrase [Bacillus thuringiensis str. Al Hakam]
 gi|118417098|gb|ABK85517.1| phage integrase [Bacillus thuringiensis str. Al Hakam]
          Length = 317

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 125/288 (43%), Gaps = 26/288 (9%)

Query: 31  LSKLTLQSYECDTRQFLIFL--AFYTEEKIT---IQTIRQLSYTEIRAFI----SKRRTQ 81
           LS+ TL+SYE    +F ++L      EE+ +   I  I  ++   ++ ++     +RR  
Sbjct: 19  LSRRTLESYENTLTEFRLWLNGCNGNEEEASSRSITHIEDITSQHVKGYMRYCYQERRNS 78

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESN--ILNMRNLKKSNSLPRALNEKQALTLVD 139
                ++   L+ IK +  YL    +  E +  IL ++N +K  ++   L E+Q   ++ 
Sbjct: 79  HT---TVAGKLTNIKVYFNYLANEGLIDERDNPILRVKNPQKDTNV-ETLTEEQVRLMLR 134

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDKI 197
           ++      +  +   R+  ++  L G G R+ E + L  ++I   D Q      GK    
Sbjct: 135 HLRRRRRVD-DFYHYRDYTLVVFLLGTGARLGEIMDLCWKDIDLKDGQVVFPATGKARTQ 193

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQRYIRQLRRY 253
           +  PL   +   + EY      D    +   LF    G+ L+      VF R  ++L+  
Sbjct: 194 QGQPLGAKLVSELKEYKQYLEND-TYGLPAYLFTTRTGRKLSREAIKLVFVRLAQELKFE 252

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            G     +AH+LRH + + L+  G     +Q ++ H ++ TT  Y  +
Sbjct: 253 YG---RVSAHSLRHFYCSSLIKAGVSPFVVQKLMRHSKIETTMKYVTL 297


>gi|253774150|ref|YP_003036981.1| integrase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|297520846|ref|ZP_06939232.1| integrase family protein [Escherichia coli OP50]
 gi|242376639|emb|CAQ31349.1| ybl28 [Escherichia coli BL21(DE3)]
 gi|253325194|gb|ACT29796.1| integrase family protein [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|332342181|gb|AEE55515.1| phage integrase [Escherichia coli UMNK88]
          Length = 338

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 28/186 (15%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--------TKWIDARNSAILYLLYGCGLRISEALS 175
           S P  L   +  T+ +  +   +HE         K  D   + ++ +    G R  EA++
Sbjct: 154 SYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICLSTGARWREAIN 213

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           LT   +   + T  ++ KG K R +P+   + + I+    L  F+               
Sbjct: 214 LTRSQVTKYRITF-VRTKGKKNRSIPISKELYEEIMA---LDGFNF-------------- 255

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  FQ      +  + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T
Sbjct: 256 --FTDCYFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMT 313

Query: 296 QIYTNV 301
             Y ++
Sbjct: 314 MRYAHL 319


>gi|218514867|ref|ZP_03511707.1| site-specific tyrosine recombinase XerC [Rhizobium etli 8C-3]
          Length = 60

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/47 (55%), Positives = 30/47 (63%)

Query: 4  NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL 50
          N L  I    L+ ER  WL+NL  ER LS+ TL +YE DTRQFL FL
Sbjct: 2  NELLVIADPRLMAERAAWLENLARERRLSEHTLDAYERDTRQFLTFL 48


>gi|187926512|ref|YP_001892857.1| integrase family protein [Ralstonia pickettii 12J]
 gi|187928816|ref|YP_001899303.1| integrase family protein [Ralstonia pickettii 12J]
 gi|241589911|ref|YP_002979936.1| integrase family protein [Ralstonia pickettii 12D]
 gi|241666000|ref|YP_002984359.1| integrase family protein [Ralstonia pickettii 12D]
 gi|187725706|gb|ACD26871.1| integrase family protein [Ralstonia pickettii 12J]
 gi|187728266|gb|ACD29430.1| integrase family protein [Ralstonia pickettii 12J]
 gi|240868027|gb|ACS65687.1| integrase family protein [Ralstonia pickettii 12D]
 gi|240868623|gb|ACS66282.1| integrase family protein [Ralstonia pickettii 12D]
          Length = 397

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 72/175 (41%), Gaps = 26/175 (14%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMD-------DQSTLRIQGKGDKIRIVPLLPSV 206
           AR   +  +LY  GLR++E  S     +         ++  + + GKG K R+VP    +
Sbjct: 206 ARCRWLFSVLYLAGLRLAEIASTRMGAVFSRRDAAGVERWWIEVHGKGGKTRLVPATDEL 265

Query: 207 RKAILEYYDLC--PFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYLG------- 255
              +  Y  +C  P    +    PL   + G  KPL+       ++++ +          
Sbjct: 266 IAELARYRRICGLPPSPQIGETRPLLLPVIGPEKPLSRAAIHLIVKEVFKLAADRVRAQG 325

Query: 256 --------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                   +  S ++H LRH+  +H+     DLR ++   GH  L+TT +Y +  
Sbjct: 326 PEFGAQADVLASASSHWLRHTAGSHMSDQQVDLRFVRDNFGHASLATTSVYLHAE 380


>gi|323171324|gb|EFZ56971.1| phage integrase family protein [Escherichia coli LT-68]
          Length = 192

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 66/158 (41%), Gaps = 2/158 (1%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILE 212
           AR+  ++ L Y  G+RISE L L  Q++  ++  + I+   +    V PL    R+A+  
Sbjct: 26  ARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVER 85

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +          +    +F   RG  L+     R IR      G    T  H LRH+    
Sbjct: 86  WTQERANWKGADRTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYE 145

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-GGDW 309
           L   G D R IQ  LGH  +  T  YT  N+    G W
Sbjct: 146 LAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLW 183


>gi|295085954|emb|CBK67477.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 386

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 9/111 (8%)

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +V LLP   + I +Y  +  F ++ +   P+           G  +  ++++    G  +
Sbjct: 268 VVKLLPIAVELIEKYRGVNEFKVSPDRVFPVG--------EIGSMEDSLKRIGEKAGCSV 319

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN-VNSKNGGD 308
             + H  RH+FAT  LS G  L ++Q +LGH  + +TQ+Y   +N K G D
Sbjct: 320 RVSPHVGRHTFATLALSKGMPLETLQKVLGHKTIISTQVYAELINPKIGED 370


>gi|291515473|emb|CBK64683.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 355

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 14/146 (9%)

Query: 163 LYGC--GLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           L+ C   LRIS+ L+L  + I+D  +  + +     K +   ++P   +A          
Sbjct: 207 LFSCLTSLRISDILTLRWEEIVDFAAGGKCVYTVTQKTKTEDIIPISDEA---------- 256

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
            L L    P   G+  K L     Q  +++  R  G+  + T H+ R +FAT   + G D
Sbjct: 257 -LQLIGYSPEKTGLVFKGLKRCWTQYPMKEWIRTAGITKNITFHSYRRTFATLQAAAGTD 315

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKN 305
           +R+IQSI+ H  ++TTQ Y  V   N
Sbjct: 316 IRTIQSIMAHKSITTTQRYMKVVDSN 341


>gi|254885206|ref|ZP_05257916.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|254837999|gb|EET18308.1| integrase [Bacteroides sp. 4_3_47FAA]
          Length = 430

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 69/159 (43%), Gaps = 35/159 (22%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------GDKIRIVPL---LP 204
           A L+  Y  GLR S+   L+P N       +++ GK          G +IR+ PL     
Sbjct: 260 AFLFCCY-TGLRYSDFCQLSPANF------IKVNGKRWLHFTSVKTGVEIRL-PLHLLFE 311

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           S    IL+ Y             P    +   P N  V  + +R+L    G+    T H 
Sbjct: 312 SRALGILDRY-------------PDIGSLASLPCNSEV-NKQLRKLAGLCGIKKRITYHV 357

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            RH+ AT L+  G  + ++Q +LGH  + TTQIY+ V S
Sbjct: 358 SRHTCATLLVHQGVAITTVQKLLGHTSVKTTQIYSEVLS 396


>gi|168998697|ref|YP_001687965.1| phage integrase family protein [Klebsiella pneumoniae NTUH-K2044]
 gi|238549716|dbj|BAH66067.1| resolvase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 259

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 30/44 (68%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T HT RHS+A H+L  G  L  +QS++GH  +S+T++YT V
Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLNLLQSLMGHKSISSTEVYTKV 231


>gi|255037949|ref|YP_003088570.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254950705|gb|ACT95405.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 406

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 10/110 (9%)

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K D    +PLLP+    I+E Y   P   N  + LP+        L+      Y++++  
Sbjct: 287 KTDAPTRIPLLPTALD-IIEKYKEHPQCCNKGVVLPV--------LSNQKMNAYLKEIAN 337

Query: 253 YLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             G+  + T H  RH+FAT + LSN   + ++  +LGH  L  T IY  +
Sbjct: 338 LCGISKTLTFHIARHTFATTVTLSNKVPIETVSKMLGHRSLKQTMIYAKI 387


>gi|325298924|ref|YP_004258841.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324318477|gb|ADY36368.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 406

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 78/186 (41%), Gaps = 16/186 (8%)

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG-LRISEALSLTPQN 180
           + +  RAL++   L ++D    H S   ++       I    Y CG +   +   LT  N
Sbjct: 211 TKTAKRALSKDDILKIIDADCSHASERRQF----TQDIFTFSYLCGGISFVDIAHLTGTN 266

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD--------LCPFDLNLNIQLPLFRG 232
           I++D+   + Q     I +  +L    K I++ Y         L P   N     P+ + 
Sbjct: 267 IVEDRLLYKRQKTHGSINL--MLTDRAKQIIQKYSYYQRQTGYLFPILHNKRHVTPMQQN 324

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
            R   +   +    +R   + LG+    T +  RHSFAT L  +G ++  I   LGH  +
Sbjct: 325 NRVHKICHQI-NTELRAFAKELGITAEVTTYVARHSFATILKKSGVNIGIISQALGHQDI 383

Query: 293 STTQIY 298
            TTQIY
Sbjct: 384 KTTQIY 389


>gi|317479188|ref|ZP_07938324.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316904632|gb|EFV26450.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 409

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 28/154 (18%)

Query: 162 LLYGC--GLRISEALSLTPQNIM-DDQSTL---RIQGKGDKIRIVPLLPSVRKAILEYYD 215
            L+ C  G+  ++A+S+T  NI  DD+  L    ++ K + +  V LLP     I +Y  
Sbjct: 253 FLFACYTGVPYADAVSITRDNIYKDDKGDLWLKYLRKKNEYLARVKLLPEAISLIEKY-- 310

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGV----FQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
                          R    K L P +     +R+++ LR   G+      H  RH+F +
Sbjct: 311 ---------------RSDDRKELFPMIHHPNMRRHMKGLRDLAGISCDLVYHMGRHTFGS 355

Query: 272 HL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            + L  G  + +I  +LGH  L+TTQ+Y  V+ K
Sbjct: 356 LITLEAGVPIETISKMLGHTNLTTTQLYARVSPK 389


>gi|301309511|ref|ZP_07215453.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3]
 gi|300832600|gb|EFK63228.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3]
          Length = 418

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 34/63 (53%)

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +P    R I++     G+    T H  RHS+AT  L+ G D+ ++  +LGH  + TTQ+Y
Sbjct: 336 DPSWINRPIKKWVVEAGITKHITYHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVY 395

Query: 299 TNV 301
             V
Sbjct: 396 AKV 398


>gi|265763426|ref|ZP_06091994.1| transposase [Bacteroides sp. 2_1_16]
 gi|263256034|gb|EEZ27380.1| transposase [Bacteroides sp. 2_1_16]
          Length = 308

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 25/156 (16%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           +Y+    GLRI E  +L   +I   + T+ +    ++I I+  +    + ++      P 
Sbjct: 133 IYISLCTGLRIGEVCALKWSDINVSEGTITVNRTIERIYIINGMEKHTELVIN----TPK 188

Query: 220 DLNLNIQLPLFRGIRG--KPL------------------NPGVFQRYIRQLRRYLGLPLS 259
             N   ++P+ + +    KPL                   P  ++ Y  +L   LG+P  
Sbjct: 189 TQNSCREIPITKELLAMVKPLKKVVNEEFYVLTNDEYPTEPRTYRNYYGKLMAKLGIP-K 247

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
              H LRHSFAT  +  G D +++  +LGH  +STT
Sbjct: 248 LKYHGLRHSFATRCIEAGCDYKTVSVLLGHSNISTT 283


>gi|299822017|ref|ZP_07053904.1| tyrosine recombinase XerC [Listeria grayi DSM 20601]
 gi|299816645|gb|EFI83882.1| tyrosine recombinase XerC [Listeria grayi DSM 20601]
          Length = 309

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 20/180 (11%)

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P+ LN+ +   ++  + L  ++E  W        + L+   GLR SEAL+LTP +    +
Sbjct: 115 PKFLNQFEVQAMLKQLKL--TNEINW-----DWFILLVAKTGLRFSEALALTPNDFDFSK 167

Query: 186 STLRIQGKGD-KIRIVPLLP-----SVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGK 236
             L +    + K  I    P     S RK  +++     F      ++   P+F  ++ +
Sbjct: 168 QKLAVSKTWNYKGTIGEFQPTKNNSSKRKIQIDWQTAMQFSQLIKEIDPDKPIF--VKSR 225

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
             N  V  R ++ L    G+P+  T H LRH+ A+ LL  G  + S+ + LGH  ++TTQ
Sbjct: 226 VFNSTVNNR-LKTLCVEAGIPI-ITIHGLRHTHASLLLFAGVSIASVATRLGHSSMTTTQ 283


>gi|332826665|gb|EGJ99491.1| hypothetical protein HMPREF9455_04143 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 406

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 7/96 (7%)

Query: 214 YDLCPFDLNLNIQLPLFRGI----RGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           Y++   +L L I L  +RG     R  P+ P G   R ++++ R  G+    T H  RH+
Sbjct: 290 YEIPMLELPLQI-LERYRGTVSDERLLPMYPNGELNRELKKIARICGITRRLTWHCGRHT 348

Query: 269 FATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +AT + LS G  + ++  +LGH +++TTQIY  + +
Sbjct: 349 YATEITLSQGVPIETVSRMLGHSQIATTQIYAKITN 384


>gi|329954882|ref|ZP_08295899.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
 gi|328526986|gb|EGF53997.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
          Length = 414

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 22/153 (14%)

Query: 159 ILYLLYGCG-LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD-- 215
           I    Y CG +  ++  +LT +NI++ +     Q  G  I+I   +P     I+E Y   
Sbjct: 254 IFIFSYLCGGINFTDIANLTQENIVNGRLHYIRQKTGKLIKIG--IPQEAMLIIEKYAKE 311

Query: 216 ----LCPFDLNLNIQLPLFRG------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
               L P  LN+ +     +       IRGK          +R L + LG+  + T +  
Sbjct: 312 GNGYLFPI-LNVKVHKTALQKQNRIHKIRGK------VNEVLRILGKRLGIEANITTYVA 364

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           RHSFA+ L  +G ++  I   LGH  L+TTQIY
Sbjct: 365 RHSFASVLKKSGVNIALISEALGHSDLATTQIY 397


>gi|217038356|gb|ACJ76643.1| class 1 integrase intI1 [Klebsiella pneumoniae]
          Length = 295

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 110/284 (38%), Gaps = 58/284 (20%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
           +    FQR  ++     G+    T HTLRHSFAT LL +G D+R
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIR 295


>gi|149184911|ref|ZP_01863228.1| phage integrase [Erythrobacter sp. SD-21]
 gi|148831022|gb|EDL49456.1| phage integrase [Erythrobacter sp. SD-21]
          Length = 304

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 72/152 (47%), Gaps = 20/152 (13%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           LL   GLRISEAL+L   ++++D   +R  GK  K R++ L PS+R+A LE Y      L
Sbjct: 134 LLAATGLRISEALALQCDDLVEDGLIVR-DGKFGKQRLIALQPSIRQA-LEAYLATRARL 191

Query: 222 NLNIQLPLFRGIRGKPLNP----GVFQRYIRQLRRYLGLPLSTTA---HTLRHSFATHLL 274
                  LF  IRG+  +      VF R  RQL  Y G P  T     H LRH+FA   L
Sbjct: 192 GATGN-DLFVTIRGRAPHKVRAHVVFVRLARQL-GYRG-PTGTAGMRLHDLRHTFAVRSL 248

Query: 275 SNGGDLR--------SIQSILGHFRLSTTQIY 298
            +    R        ++   LGH  ++ T  Y
Sbjct: 249 ESCSPDRDAVTHHMAALSVYLGHTSVANTYWY 280


>gi|148285126|ref|YP_001249216.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|146740565|emb|CAM81175.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
          Length = 442

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            K ++     R   ++R+  G+P + T H LR +FAT +++NG  + +I  ILGH   +T
Sbjct: 330 SKHISSSTIHRAWAKIRKKAGIP-NVTIHDLRRTFATWMINNGETVDTISQILGHSNTNT 388

Query: 295 TQIY 298
           T+IY
Sbjct: 389 TKIY 392


>gi|116747973|ref|YP_844660.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
 gi|116697037|gb|ABK16225.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
          Length = 189

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 15/136 (11%)

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K  I+PL  +   AI +      +         +F G  G  L    F+     +R+
Sbjct: 19  KGGKTEIIPLSDTTLSAIEDLARKSEY---------VFPGREGAMLTG--FKGPWEMVRK 67

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              LP S   H +RHSFA++L+S+G D  ++  +  H +  TTQ Y +++ +     M  
Sbjct: 68  EAKLPASFHFHGIRHSFASNLVSSGVDFYTVGGLRTHKQAVTTQRYAHLSDEA----MRR 123

Query: 313 IYDQTHPSITQKDKKN 328
             +++   IT K+KK 
Sbjct: 124 AVEKSAEVITPKEKKE 139


>gi|258511054|ref|YP_003184488.1| integrase family protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257477780|gb|ACV58099.1| integrase family protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 391

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TT 295
           P +P  F   I+  R+ LGLP   + H LRH+ AT LL +G DL+ +   LGH  ++ T 
Sbjct: 295 PPSPASFNNAIQNARKELGLP-PVSFHGLRHTHATWLLESGVDLKIVSERLGHSSITITA 353

Query: 296 QIYTNVN 302
            IY +V 
Sbjct: 354 DIYAHVT 360


>gi|189462246|ref|ZP_03011031.1| hypothetical protein BACCOP_02932 [Bacteroides coprocola DSM 17136]
 gi|189431048|gb|EDV00033.1| hypothetical protein BACCOP_02932 [Bacteroides coprocola DSM 17136]
          Length = 271

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 97/225 (43%), Gaps = 32/225 (14%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           +L+  L+ +K   +   K   + + +  + +  K+  S PRALN +    L D       
Sbjct: 64  TLRGYLAILKKICRIAYKEGHSEKYHFCHFKLPKQKESTPRALNRENFEKLRD------- 116

Query: 147 HETKWIDARNSAIL---YLLYGC--GLRISEALSLTPQNIM-DDQSTLRIQ---GKGDKI 197
              +  + R S I+     L+ C  G   ++A+S+T +N+  DD  +L ++    K D +
Sbjct: 117 --LEIPEKRRSHIITKDLFLFACYTGTAYADAVSITRENLFTDDGGSLWLKYRRKKTDYL 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
             V LLP     I +Y D        + +  LF      P +    +  ++ LR   GL 
Sbjct: 175 GRVKLLPEAVALIEKYRD--------DTRETLF-----PPQDYHTLRGNMKALRLMAGLS 221

Query: 258 LSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                H  RHSFA+ +    G  + +I  +LGH  + TTQIY   
Sbjct: 222 QDLVYHMGRHSFASLVTFEEGVPIETISKMLGHSNVRTTQIYARA 266


>gi|169544213|ref|YP_001692988.1| hypothetical protein pYE854_p045 [Yersinia enterocolitica]
 gi|168218397|emb|CAP20140.1| hypothetical protein [Yersinia enterocolitica]
          Length = 256

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 26/177 (14%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQ--NIMDDQSTL-------RIQGKGDKI------ 197
           D R   ++  L+  G R++EAL+LTP   +I  D   +       R +G+G         
Sbjct: 62  DLRQRLLIETLWNTGARLNEALALTPACFHIEGDSPFVVLKTLKQRQKGRGRPKEGQTLK 121

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL------- 250
           RIVPLL      ++  Y L  F        PL+    G  ++    + ++R         
Sbjct: 122 RIVPLLDENYVRLVHEY-LATF--RPKKYAPLWVNEHGDTISDETPRTWLRAAVTRANRD 178

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                LP+  T  T RHSFA HL+ +G   + +Q+ +GH   ++T++YT + + + G
Sbjct: 179 SVTFSLPV-ITPKTFRHSFAMHLVQSGVAFKVVQTFMGHKDAASTEVYTRIFALDVG 234


>gi|153812497|ref|ZP_01965165.1| hypothetical protein RUMOBE_02896 [Ruminococcus obeum ATCC 29174]
 gi|149831422|gb|EDM86510.1| hypothetical protein RUMOBE_02896 [Ruminococcus obeum ATCC 29174]
          Length = 378

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 24/159 (15%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-------RIQGK--GDKIRIVPLLPS 205
           RN  +L  +Y  G+R+ EA +LT ++I   +  +       RIQ +  G K  I+   P 
Sbjct: 200 RNLGLLICMY-TGIRLGEACALTWEDISLTEGYIYIHKTMQRIQKEHNGKKTMIIIAEPK 258

Query: 206 VRKAILEYYDLCPFDLNL-----NIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            + +I       P    L     + +LP    L  G   + + P  +Q + +++ +   +
Sbjct: 259 TQSSI----RTIPLPRQLIQLIKSSKLPMQGYLLTGSYERYIEPRNYQYHFKKILQQCKI 314

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           P  T  HTLRH+FAT  +  G D++++  ILGH  ++ T
Sbjct: 315 P-QTNFHTLRHTFATRCVELGFDVKTLSEILGHSNINIT 352


>gi|154488726|ref|ZP_02029575.1| hypothetical protein BIFADO_02033 [Bifidobacterium adolescentis
           L2-32]
 gi|154082863|gb|EDN81908.1| hypothetical protein BIFADO_02033 [Bifidobacterium adolescentis
           L2-32]
          Length = 446

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 72/176 (40%), Gaps = 27/176 (15%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-----QGKGD-------------K 196
           R S  L LL G GLRI E   L  ++I  +   L +     QG  D              
Sbjct: 220 RLSVHLALLVG-GLRIGEVCGLQLRDIDLEHGLLYVRHSVTQGPDDLGAYRLDETKTPES 278

Query: 197 IRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRY 253
            R+VP+   V + I E+ D  CP   N N    LF   R   + LNP   QR  R  R+ 
Sbjct: 279 RRVVPIPAPVCRLIREHIDRFCP---NRNPDTMLFHAPRHPERVLNPTTIQRQFRTARKR 335

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGD 308
           +      T H+LR + AT  +  GG LR     LGH  +    + Y  V  ++  D
Sbjct: 336 IDRE-DVTFHSLRATHATMFMIQGGTLRETMDELGHVDVDVAVRCYQRVVPRHRRD 390


>gi|153816821|ref|ZP_01969488.1| integrase [Vibrio cholerae NCTC 8457]
 gi|126512624|gb|EAZ75218.1| integrase [Vibrio cholerae NCTC 8457]
          Length = 343

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 35/55 (63%)

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           YI + +  + LP    +H LRH+FA+H + NGG++  ++ +LGH  +S T  Y++
Sbjct: 271 YILKNKLGITLPSGQASHVLRHTFASHFMMNGGNILVLRDVLGHADISMTMRYSH 325


>gi|113473886|ref|YP_718149.1| putative integrase [Sphingomonas sp. KA1]
 gi|112821566|dbj|BAF03437.1| putative integrase [Sphingomonas sp. KA1]
          Length = 304

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 70/152 (46%), Gaps = 20/152 (13%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           LL   GLRISEAL+L   ++  D   +R  GK  K R++ L PS R+A LE Y      L
Sbjct: 134 LLAATGLRISEALALQCDDLGGDGLIIR-NGKFGKQRLIALQPSTRQA-LEAYLATRARL 191

Query: 222 NLNIQLPLFRGIRGKPLNPG----VFQRYIRQLRRYLGLPLSTTA---HTLRHSFATHLL 274
                  LF  IRG+  +      VF R  RQL  Y G P  TT    H LRH+FA   L
Sbjct: 192 GATGS-DLFVTIRGRAPHKVRAHIVFVRLARQL-GYRG-PTGTTGMRLHDLRHTFAVRSL 248

Query: 275 SN--------GGDLRSIQSILGHFRLSTTQIY 298
            +           +  + + LGH  ++ T  Y
Sbjct: 249 ESCSPDREAVAHHMAGLSAYLGHASIANTYWY 280


>gi|256375070|ref|YP_003098730.1| integrase family protein [Actinosynnema mirum DSM 43827]
 gi|255919373|gb|ACU34884.1| integrase family protein [Actinosynnema mirum DSM 43827]
          Length = 399

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 39/174 (22%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI--------------QGKGDKIRIVPLLPSVR 207
           L  GCGLR  E    +  ++ + +  + +                K  + R VPL PSV 
Sbjct: 207 LGAGCGLRQGEVFGFSADDVDESEGVIHVLRQVKIVRGKMVFAPPKHGRSRDVPLAPSVA 266

Query: 208 KAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPG--VFQRYIRQLRRY----------- 253
           +A+  +     P  + L  Q+P      GKP+     ++ R  +QL R+           
Sbjct: 267 QALEAHTKRFPPLPVTLPWQVP-----EGKPVTVPLMIYTREAKQLYRHSFNHHVWKPAL 321

Query: 254 --LGLPLSTTA---HTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNV 301
              G+     A   H LRH +A+ LL  G  +R++   LGH   + T ++YT++
Sbjct: 322 RAAGVAEPGRAEGFHALRHFYASSLLDEGVSIRALAEYLGHGDPAFTLRVYTHL 375


>gi|153808327|ref|ZP_01960995.1| hypothetical protein BACCAC_02620 [Bacteroides caccae ATCC 43185]
 gi|149129230|gb|EDM20446.1| hypothetical protein BACCAC_02620 [Bacteroides caccae ATCC 43185]
          Length = 409

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 68/151 (45%), Gaps = 16/151 (10%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD--L 216
            L+   GCG+ + +   L  +NI +++        G  I    L   +R+ IL+Y     
Sbjct: 247 FLFSYLGCGINLIDIAYLRYENITENRLRFNRHKTGQPINFA-LQGQLREIILKYAKEGC 305

Query: 217 CPFDLNLNIQLPLFRGI---------RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
            P D    I   L R I         R   +  GV  R ++++ ++L L +  T +  RH
Sbjct: 306 SPKDFIFPI---LDRRIHKTQQQQDDRIIKVTKGV-NRNLKKIGQFLNLSIPITTYVARH 361

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           SFAT L  +G ++  I   LGH  LSTTQ Y
Sbjct: 362 SFATVLKRSGVNISIISEALGHTNLSTTQYY 392


>gi|256841231|ref|ZP_05546738.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737074|gb|EEU50401.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 354

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 18/148 (12%)

Query: 163 LYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           L+ C   LRIS+ L+L  ++I+D  +       G K   V ++    KA     D+ P  
Sbjct: 206 LFSCMTSLRISDILALCWEDIVDYSA-------GGKC--VHIITQKNKA----EDIIPIS 252

Query: 221 ---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
              L L       +G+  K L     Q  +++  R  G+  + T H+ R +FAT   + G
Sbjct: 253 EEALGLIGYSSEKKGLVFKGLMRSWTQIPMKEWIRSAGITKNITFHSYRRTFATLQAAAG 312

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            D+R+IQSI+ H  ++TTQ Y  V   N
Sbjct: 313 TDIRTIQSIMAHKSITTTQRYIKVVDAN 340


>gi|237723556|ref|ZP_04554037.1| tyrosine type site-specific recombinase [Bacteroides sp. D4]
 gi|229438107|gb|EEO48184.1| tyrosine type site-specific recombinase [Bacteroides dorei
           5_1_36/D4]
          Length = 399

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 18/148 (12%)

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPF 219
           +  Y  G+   +  +LT +NI+D++   +    G  I++ PL+P   + I +Y+D   P+
Sbjct: 243 FTYYMGGINFVDIANLTQKNIIDNRLVYKRSKTGKLIKL-PLVPQAVELIKKYHDKNSPY 301

Query: 220 DLNLNIQLPLF---------RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
                   P+F         +  R   +   V +R ++Q+   LG+P+  T +  RHS A
Sbjct: 302 ------LFPIFSNRHTTEQEKANRLHKVITKVNKR-LKQIGEELGIPIPITTYVARHSQA 354

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIY 298
           T +   G     I  I+GH     TQ+Y
Sbjct: 355 TIMKKAGISTAIIGQIMGHSSERVTQVY 382


>gi|167463246|ref|ZP_02328335.1| integrase-recombinase protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322382733|ref|ZP_08056583.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321153302|gb|EFX45740.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 232

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 26/153 (16%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAIL 211
           R+ AI+YL    GLR+SE ++L  ++I+  Q +  +    GKG+  R VPL         
Sbjct: 81  RDIAIVYLFVYSGLRVSEMVALDREDIVIGQRSGSVTVRNGKGNIERTVPL--------- 131

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY-----IRQLRRYLGLPLSTTAHTLR 266
                 P +  L  QL L+   R    +      Y     +R ++R L        H LR
Sbjct: 132 ------PVEARL--QLSLYLESRTDDQSALFLSNYRRRISVRSVQRVLE-KFGVHPHQLR 182

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           H++   L+  G D+ ++  + GH  ++ T+ Y 
Sbjct: 183 HTYCRELVGAGVDIATVAELAGHADINMTRRYA 215


>gi|164687373|ref|ZP_02211401.1| hypothetical protein CLOBAR_01014 [Clostridium bartlettii DSM
           16795]
 gi|164603797|gb|EDQ97262.1| hypothetical protein CLOBAR_01014 [Clostridium bartlettii DSM
           16795]
          Length = 193

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 10/156 (6%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           + R+ A++ LL   G+R+ E + L   +I  ++    + GKGDK R V    +  K  L+
Sbjct: 35  EIRDLAMIDLLNSTGMRVGELVRLNISDINFNERECIVLGKGDKQRKV-YFDAKTKIHLQ 93

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKP---LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
            Y     D N  + + L      KP   LN    +  +R L R L +      H  R + 
Sbjct: 94  SYLKSRDDENDALFVSLL-----KPHNRLNISGVEIRMRNLGRRLNIN-KVHPHKFRRTL 147

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           AT  +  G  +  +Q +LGH ++ TT  Y  VN  N
Sbjct: 148 ATRAIDKGMPIEQVQQLLGHSKIDTTLQYAMVNQNN 183


>gi|207722744|ref|YP_002253179.1| integrase/recombinase protein [Ralstonia solanacearum MolK2]
 gi|206587926|emb|CAQ18507.1| putative integrase/recombinase protein [Ralstonia solanacearum
           MolK2]
          Length = 671

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 84/217 (38%), Gaps = 46/217 (21%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---- 182
           R+L E Q   +V+ + L     +   + R    L LLY  GLR++E ++ T  ++     
Sbjct: 441 RSLTEDQWAFVVERLFLLERTSS---NLRLQITLPLLYATGLRLAEVVAATTADLAWRSL 497

Query: 183 --------DDQSTLRIQGKGDKIRIVPLLPSVRKAILEY-----YDLCPFDLNLNIQL-- 227
                    D   L + GKG ++R VP+   V +A+  Y     +   P      + L  
Sbjct: 498 VLPRSGERMDGWWLTVIGKGSRVREVPVPDEVVQALGTYLMSRGFPSDPRQAREPVALLG 557

Query: 228 ---------PLFR---GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT------------AH 263
                    P  +        PL  GV  R I++  +     L  T             H
Sbjct: 558 HATDQAERAPWAKRNTASPAAPLTAGVLYRQIKRFFQACAAELEATDRQGAVRLNEASTH 617

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            +RHS A+H ++ G  +  +Q  LGH  L TT +Y  
Sbjct: 618 WMRHSHASHAIAAGTPVEIMQQNLGHRSLDTTTVYVT 654


>gi|255655885|ref|ZP_05401294.1| putative tyrosine recombinase [Clostridium difficile QCD-23m63]
 gi|296450693|ref|ZP_06892446.1| phage integrase family site-specific recombinase [Clostridium
           difficile NAP08]
 gi|296879190|ref|ZP_06903185.1| phage integrase family site-specific recombinase [Clostridium
           difficile NAP07]
 gi|296260537|gb|EFH07379.1| phage integrase family site-specific recombinase [Clostridium
           difficile NAP08]
 gi|296429733|gb|EFH15585.1| phage integrase family site-specific recombinase [Clostridium
           difficile NAP07]
          Length = 375

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 22/159 (13%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AIL L    GLR++E   L   +    +   +I  K  K  ++P+  +    I +Y 
Sbjct: 205 RDKAILALFVTYGLRLNELRELNISSFNFSRGEFKIYRKRGKEVLMPINHTCEHVIKDYL 264

Query: 215 -------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLSTT----- 261
                  +L    LN   +  LF  ++ K +      + IR L ++Y  +PL TT     
Sbjct: 265 QNERTRDEL----LNDEEKDALFLSLQNKRITA----KAIRTLVKKYTSIPLDTTRENGY 316

Query: 262 -AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
             H LR + AT L+  G  +  +Q++L H  ++TTQ+Y 
Sbjct: 317 SPHKLRATAATSLIQTGFSIYDVQNLLDHDNVTTTQLYA 355


>gi|84517249|ref|ZP_01004604.1| Site-specific recombinase XerD-like [Loktanella vestfoldensis
           SKA53]
 gi|84508924|gb|EAQ05386.1| Site-specific recombinase XerD-like [Loktanella vestfoldensis
           SKA53]
          Length = 401

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 83/195 (42%), Gaps = 19/195 (9%)

Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
           TE+    +R LK++N   R +  ++   L D V    +   K I A        L   G 
Sbjct: 190 TENPTHGVRLLKENNKKERYVRAEEMARLYDEVCGSQNIMLKHIVA-------FLVLTGA 242

Query: 169 RISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           R +E L  T  +I       RI + K    R VPL       + +  D+         Q 
Sbjct: 243 RRNEVLHATWHDINMTTGKWRIPETKSGYARHVPLNDGAMAVLQQMQDVS------RSQY 296

Query: 228 PLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
                  GKP    V   Y   + RR  GLP     H LRH+FA+ L++NG  L ++Q +
Sbjct: 297 IFGNPNTGKPY---VHIYYAWDIARRRAGLP-DVRMHDLRHTFASLLVNNGSSLYAVQML 352

Query: 287 LGHFRLSTTQIYTNV 301
           LGH ++ TTQ Y ++
Sbjct: 353 LGHTQIKTTQRYAHL 367


>gi|322436150|ref|YP_004218362.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321163877|gb|ADW69582.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 411

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 3/70 (4%)

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           RGKPL    F+  +R +    G+P+    H  RH+ A  +L   G+L+  Q ILGH  +S
Sbjct: 285 RGKPLTYAAFESSLRYIGGKAGVPVHP--HLFRHTLAQGVLDLTGNLKIAQEILGHAHIS 342

Query: 294 TT-QIYTNVN 302
           TT  IYT V+
Sbjct: 343 TTADIYTRVD 352


>gi|229016968|ref|ZP_04173889.1| Integrase [Bacillus cereus AH1273]
 gi|229027048|ref|ZP_04183355.1| Integrase [Bacillus cereus AH1272]
 gi|229113453|ref|ZP_04242903.1| Integrase [Bacillus cereus Rock1-15]
 gi|229160670|ref|ZP_04288663.1| Integrase [Bacillus cereus R309803]
 gi|228622805|gb|EEK79638.1| Integrase [Bacillus cereus R309803]
 gi|228669971|gb|EEL25364.1| Integrase [Bacillus cereus Rock1-15]
 gi|228734242|gb|EEL84929.1| Integrase [Bacillus cereus AH1272]
 gi|228744328|gb|EEL94409.1| Integrase [Bacillus cereus AH1273]
          Length = 364

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 72/328 (21%), Positives = 136/328 (41%), Gaps = 51/328 (15%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLA----------FYTE-EKITIQTIRQLSYTE 70
           ++ +E++  LS  TL  Y  +  +F  ++             TE  +I I+ +  L   E
Sbjct: 28  VEYIEMKAMLSPATLYGYITEFEKFFKWMIEKRIAVINGNVATEIHEIPIELLESLPLNE 87

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-L 129
           +  F    + + I  +++ R+ S +KS  KYL ++      N    RN+     L +  +
Sbjct: 88  VNRFHMYLKGEGIEIKAINRTFSALKSLFKYLSQKTEDEYGNSYLSRNVMDKIELHKEKI 147

Query: 130 NEKQALTLVDNVLLHTSHETKWI-------------------------DARNSAILYLLY 164
           +       V N++ + + +  ++                           R+ A++ L+ 
Sbjct: 148 DAAARADDVANMIFNNNDDAAFLRFLANDYEFILKETSTRKYNYFLRDKERDIALISLIL 207

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL------CP 218
           G GLR+SE  SL+  ++   Q T+++  KG+K   +    S    + EY  +      CP
Sbjct: 208 GTGLRVSELASLSLSSVNFRQKTIKVIRKGNKKSSILATQSSLDDVQEYLKVRQERYGCP 267

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL--RRYLGLPLSTTAHTLRHSFATHLLSN 276
            +     ++      +GK     V  R I+ L  +         + H LRH++AT+    
Sbjct: 268 PEE----EIMFVTRYQGKYTQLSV--RAIQNLVDKYTSAFDEKRSPHKLRHTYATNHYKE 321

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             DL  ++  LGH  +  T IYTN+N++
Sbjct: 322 NKDLVLLRDQLGHTSVEVTSIYTNINNE 349


>gi|94970788|ref|YP_592836.1| phage integrase [Candidatus Koribacter versatilis Ellin345]
 gi|94552838|gb|ABF42762.1| phage integrase [Candidatus Koribacter versatilis Ellin345]
          Length = 379

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 119/284 (41%), Gaps = 40/284 (14%)

Query: 29  RGLSKLTLQSY--ECDT-RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           +G+SK  L  Y  E D  R        YT + IT + + + + T    + S     K+ +
Sbjct: 96  QGVSKGVLGKYTRELDRLRTHCERAGVYTAQGITRELLTEFAATWESVYPSSSTRSKVRE 155

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           R         ++FL+Y  + +       L    + +  ++P  L + +   L+D      
Sbjct: 156 R--------CRAFLRYCYECQWIPRIPALPKIQVDEPETMP--LTDAEFKRLLDATYAEV 205

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-------TLRIQGKGDKIR 198
           S   +   AR  A+  L+   GL I +AL L    ++ D+        T R Q  G  + 
Sbjct: 206 SDTDQ--RARVHALFQLMRWSGLAIGDALRLERSRVIHDEGKGVHRVVTAR-QKTGTPVS 262

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP--LNPGVFQRYIRQLRRYLGL 256
            VP+ P V + +L+        LN N +   + G +G+P  ++    + Y+R    + G 
Sbjct: 263 -VPIPPDVAEEVLKV-------LNGNPRYVFWSG-KGEPESISKNWSKYYVRPC--FEGA 311

Query: 257 PLSTT----AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            + +     +H LR +FA  LL  G  L  +  +LGH  + TT+
Sbjct: 312 KIESNGNMMSHRLRDTFACDLLQKGVPLEEVSKLLGHESIKTTE 355


>gi|77405276|ref|ZP_00782372.1| integrase-like protein [Streptococcus agalactiae H36B]
 gi|77176071|gb|EAO78844.1| integrase-like protein [Streptococcus agalactiae H36B]
          Length = 380

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 72/166 (43%), Gaps = 26/166 (15%)

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI-------RIVP-LLPSVRKAIL--- 211
           L GC  RI EA+S+ P NI     TL++ G  D+        +  P  L S R+ I+   
Sbjct: 205 LNGC--RIGEAISIEPDNIDFKNKTLQLHGTYDRTNGYINGEKTSPKTLASYRETIMSKR 262

Query: 212 ------EYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST- 260
                 E   +   + N N +      +F    G P+    F   +++    L  P++  
Sbjct: 263 EMEILQEMEFINELEKNTNKRYRDMGYIFTTRNGVPIQINSFNLALKKANERLEQPINKN 322

Query: 261 -TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
            T+H  RH+  + L  N   L++I   +GH    TT QIYT++  K
Sbjct: 323 ITSHIFRHTLVSRLAENNVPLKAIMDRVGHADAKTTVQIYTHITKK 368


>gi|254884980|ref|ZP_05257690.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|254837773|gb|EET18082.1| integrase [Bacteroides sp. 4_3_47FAA]
          Length = 368

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 99/251 (39%), Gaps = 29/251 (11%)

Query: 52  FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR---KIT 108
           +YT  K+  +   +++    R FI      K+   +++  ++ I+ F K++KK    K  
Sbjct: 125 YYTSIKMYFEYANEVNMDNCRRFIKSLEEAKLSPATIRLRITAIEKFSKWMKKPIELKRP 184

Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
                L++ N+   N   R L   +     D                    + +L   G 
Sbjct: 185 KMKRKLDISNVPTENEYNRLLEYLKTKLNKDYYFF----------------IKVLGTTGA 228

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
           R+SE    T ++I   +  L+  GKG+K R       +++ + +Y         L +   
Sbjct: 229 RLSEFQQFTWEDIAIGEVVLK--GKGNKYRRFFFQKQLQQEVKDYIKETGKSGTLAVG-- 284

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSIL 287
                R  PL    F ++++   ++ G+      AH  RH FA   L    D+  +  +L
Sbjct: 285 -----RYGPLTQRGFSQHLKAWGKHCGIDSKKMHAHAFRHFFAKMFLKKTKDIIQLADLL 339

Query: 288 GHFRLSTTQIY 298
           GH  + TT+IY
Sbjct: 340 GHGSVDTTRIY 350


>gi|153807019|ref|ZP_01959687.1| hypothetical protein BACCAC_01296 [Bacteroides caccae ATCC 43185]
 gi|149130139|gb|EDM21349.1| hypothetical protein BACCAC_01296 [Bacteroides caccae ATCC 43185]
          Length = 307

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 61/292 (20%), Positives = 120/292 (41%), Gaps = 41/292 (14%)

Query: 41  CDTRQFLIFLAFYTEEKITIQT--------IRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           CD ++ ++  +     ++T+QT           ++  +++ F+  + T  +  ++++  +
Sbjct: 15  CDAKRPIVKHSTLCAYQLTLQTHLLPRFGAAENITEKDVQQFVIDKCTSGLARKTVRDIV 74

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           + +KS +KY  K  I            +  N LP  L+      L+ ++L   +      
Sbjct: 75  AVLKSVIKYGNKHGIFHFEEWEIEYPTQTENKLPPTLSLNHQRILMRHLLEQPT------ 128

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL--------LP 204
             +N  +L  L   G+RI E  +L  +++   Q T+ +Q    +I    L         P
Sbjct: 129 -PQNIGVLLALCT-GMRIGEVCALKWEDVDFAQKTVIVQHTVGRIYNCELKSTERVHSSP 186

Query: 205 SVRKAILEYYDLCPFDLNL---------NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
             + +  E     P    L           Q P   G   +   P  ++ Y  +L + L 
Sbjct: 187 KTKNSCREI----PISKQLFQALKMVRKQSQSPYVVGTSIQSKEPRSYRDYFGRLLKRLD 242

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT---QIYTNVNSK 304
           +P     H LRH+FAT  + +  D +++  ILGH  ++TT    ++ N+N K
Sbjct: 243 IP-HLVFHGLRHTFATRCIESQCDYKTVSVILGHSNVATTLNLYVHPNLNQK 293


>gi|186686716|ref|YP_001869910.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186469601|gb|ACC85399.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
          Length = 322

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 114/287 (39%), Gaps = 34/287 (11%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI------SKRRTQKIGD 85
           S+ T ++Y+ D + F  F   +  E      +R L+    +A +      +K   Q++ +
Sbjct: 35  SESTRKAYDRDIKDF--FTKMFAVESTAEWVVRFLALPGAQALLWVVKYKAKMIEQRLSE 92

Query: 86  RSLKRSLSGIKSFL---KYLKKRKITTES----NILNMRNLKKSNSLPRALNEKQALTLV 138
            ++ R LS +++ +   + L     T E      ++  R+   S   P+   +       
Sbjct: 93  ATVNRRLSALRALVHKGRVLGVCGYTLEDIKGETVIKYRD--TSGVTPQEFKQ------- 143

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--QGKGDK 196
              +L T   T     R+ A+L LL+   LR  E   L   +     S L I  +G+G +
Sbjct: 144 ---ILLTCDPTTAKGVRDYALLRLLWDNALRRGEIAKLKMGDFDRQNSKLLILGKGRGSQ 200

Query: 197 IRIVPLLPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
              + L P  R AI   L +  L      L + L L     G PL      + +R   + 
Sbjct: 201 RETIDLTPKTRDAICYWLAFRGLASTKDALFVALDL--NTPGHPLTDTGIAKMVRTRAKK 258

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             +    + H +RHS  T  L  G  +R +Q +  H +L T  IY +
Sbjct: 259 ANISKPLSPHRIRHSSITAALDAGQSVREVQKLSRHTKLETLMIYDD 305


>gi|323126433|gb|ADX23730.1| phage integrase family site specific recombinase [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 377

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 115/269 (42%), Gaps = 56/269 (20%)

Query: 45  QFLIFLAFYTEEKITIQTIRQLSYTEIRAFI--SKRRTQKIGDRSLKRSLSGIKSFLKYL 102
           Q+  F+  Y E K++  T+R+L+ +E+R  I  +KR   +I D +    +SGI       
Sbjct: 109 QYQTFINLYAE-KVSANTVRRLN-SEVRKVINFAKRDRIEIYDFTNGVIISGI------- 159

Query: 103 KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
                       N    KK  SL    + ++ L  + N L          D + S I YL
Sbjct: 160 ------------NNSKTKKEKSLQSLADYQKLLNFLVNCL----------DYKKSVIPYL 197

Query: 163 LY---GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI-------------RIVPL---- 202
           LY     GLR  E L LT   I      +R   + D I             R +P+    
Sbjct: 198 LYIQLKTGLRFGEVLGLTWDCIDWRDKEIRTYRRYDSISYEWKPPKTETSVRSIPIDDAT 257

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGL-PLST 260
           L  ++K  +E  ++       N +  LF  +  G P N  V  +++RQL + L + P + 
Sbjct: 258 LTVLKKLKIEQKEIFNQKEIENREQFLFYNVHSGVPTNNSV-NKHLRQLLQRLKIEPYNL 316

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           ++  +RH++A+ LL+ G D+  +   +GH
Sbjct: 317 SSTGIRHTYASILLAYGIDIWVVAENMGH 345


>gi|153805908|ref|ZP_01958576.1| hypothetical protein BACCAC_00148 [Bacteroides caccae ATCC 43185]
 gi|149130585|gb|EDM21791.1| hypothetical protein BACCAC_00148 [Bacteroides caccae ATCC 43185]
          Length = 328

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 122/291 (41%), Gaps = 31/291 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N++   ++E G S  ++  Y       LI L    +E I I T     Y  +  + S+ 
Sbjct: 55  ENFISAKKVE-GCSPNSIAYYRSTINNALIKLG---KEVIHITTDDLRHY--LNTYQSES 108

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
              K+   +++R LS   SF  +L++     +S +  +  +K   ++     ++    + 
Sbjct: 109 GASKVTVDNIRRILS---SFFSWLEEENYIVKSPVRRIHKVKVGKTVKETYTDESLELMR 165

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D    H S      + R+ A++ LL   G+R+ E + L   +I        + GKGDK R
Sbjct: 166 D----HCS------NPRDLALIDLLASTGMRVGELVKLNRSDIDYHNRECIVTGKGDKQR 215

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN----PGVFQRYIRQLRRYL 254
            V    +  K  L+ Y     D N  + + L       P +     GV  R +RQ+ + L
Sbjct: 216 KV-YFDARTKIHLQKYINSRTDNNEALFVSLL-----APYDRLQISGVEIR-LRQMGKDL 268

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +P     H  R + AT  +  G  +  +Q +LGH  L TT  Y  VN  N
Sbjct: 269 NIP-KVHPHKFRRTLATMAIDKGMPIEQVQHLLGHQSLDTTLQYAMVNQNN 318


>gi|126699541|ref|YP_001088438.1| putative tyrosine recombinase [Clostridium difficile 630]
 gi|254975527|ref|ZP_05271999.1| putative tyrosine recombinase [Clostridium difficile QCD-66c26]
 gi|255092915|ref|ZP_05322393.1| putative tyrosine recombinase [Clostridium difficile CIP 107932]
 gi|255306925|ref|ZP_05351096.1| putative tyrosine recombinase [Clostridium difficile ATCC 43255]
 gi|255314656|ref|ZP_05356239.1| putative tyrosine recombinase [Clostridium difficile QCD-76w55]
 gi|255517330|ref|ZP_05385006.1| putative tyrosine recombinase [Clostridium difficile QCD-97b34]
 gi|255650436|ref|ZP_05397338.1| putative tyrosine recombinase [Clostridium difficile QCD-37x79]
 gi|260683548|ref|YP_003214833.1| putative tyrosine recombinase [Clostridium difficile CD196]
 gi|260687208|ref|YP_003218342.1| putative tyrosine recombinase [Clostridium difficile R20291]
 gi|306520413|ref|ZP_07406760.1| putative tyrosine recombinase [Clostridium difficile QCD-32g58]
 gi|115250978|emb|CAJ68807.1| putative phage integrase [Clostridium difficile]
 gi|260209711|emb|CBA63463.1| putative tyrosine recombinase [Clostridium difficile CD196]
 gi|260213225|emb|CBE04727.1| putative tyrosine recombinase [Clostridium difficile R20291]
          Length = 375

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 22/159 (13%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AIL L    GLR++E   L   +    +   +I  K  K  ++P+  +    I +Y 
Sbjct: 205 RDKAILALFVTYGLRLNELRELNISSFNFSRGEFKIYRKRGKEVLMPINHTCEHVIKDYL 264

Query: 215 -------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLSTT----- 261
                  +L    LN   +  LF  ++ K +      + IR L ++Y  +PL TT     
Sbjct: 265 QNERTRDEL----LNDEEKDALFLSLQNKRITA----KAIRTLVKKYTSIPLDTTRDNGY 316

Query: 262 -AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
             H LR + AT L+  G  +  +Q++L H  ++TTQ+Y 
Sbjct: 317 SPHKLRATAATSLIQTGFSIYDVQNLLDHDNVTTTQLYA 355


>gi|147671754|ref|YP_001215915.1| integrase [Vibrio cholerae O395]
 gi|262167833|ref|ZP_06035534.1| integrase [Vibrio cholerae RC27]
 gi|146314137|gb|ABQ18677.1| integrase [Vibrio cholerae O395]
 gi|227014823|gb|ACP11032.1| integrase [Vibrio cholerae O395]
 gi|262023741|gb|EEY42441.1| integrase [Vibrio cholerae RC27]
          Length = 343

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 35/55 (63%)

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           YI + +  + LP    +H LRH+FA+H + NGG++  ++ +LGH  +S T  Y++
Sbjct: 271 YILKNKLGITLPSGQASHVLRHTFASHFMMNGGNILVLRDVLGHADISMTMRYSH 325


>gi|332829974|gb|EGK02602.1| hypothetical protein HMPREF9455_00852 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 409

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 20/164 (12%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQST---LRIQGKGDKIRI-VPLLPSVRKAILEYYD 215
            L+ C  G   ++ + +T  N+  D+     L+   K    R  V LLP    A++E Y 
Sbjct: 253 FLFACYTGTAYADVIRITKDNLFTDEGGELWLKYARKKTDYRARVKLLPEA-IALIEKYK 311

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
               D N +   P          +P + +  ++ LR   G+    T H+ RHSFA+ + L
Sbjct: 312 ----DENRDTIFPW--------QSPEMVKANMKGLRVLAGVKEPMTYHSGRHSFASLITL 359

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             G  + +I  +LGH  +STTQIY  V  K   + M ++ + T 
Sbjct: 360 EEGVPIETISRMLGHSNISTTQIYARVTPKKLFEDMDKLIEATQ 403


>gi|330910587|gb|EGH39097.1| putative bacteriophage integrase [Escherichia coli AA86]
          Length = 345

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 78/188 (41%), Gaps = 28/188 (14%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--------TKWIDARNSAILYLLYGCGLRISEALS 175
           S P  L   +  T+ +  +   +HE         K  D   + ++ +    G R  EA++
Sbjct: 154 SYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICLSTGARWREAVN 213

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           LT   +   + T  ++ KG K R +P+   + + I+    L  F+   +           
Sbjct: 214 LTRSQVTKYRITF-VRTKGKKNRSIPISKELYEEIMA---LDGFNFFTDC---------- 259

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  FQ      +  + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T
Sbjct: 260 ------YFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMT 313

Query: 296 QIYTNVNS 303
             Y ++ +
Sbjct: 314 MRYAHLET 321


>gi|295133121|ref|YP_003583797.1| transposase [Zunongwangia profunda SM-A87]
 gi|294981136|gb|ADF51601.1| putative transposase [Zunongwangia profunda SM-A87]
          Length = 426

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 16/147 (10%)

Query: 162 LLYGC--GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRI-VPLLPSVRKAILEYYD 215
            ++ C  GL   E  +L   +I   +DD+  + ++ +  K  + +P+L    KAILE Y 
Sbjct: 253 FVFSCYTGLSYIEVKNLKQCDIVNGIDDEQWIMVRRQKTKTPVKLPVLDEA-KAILEKYA 311

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
             P + N      L R    + +N     ++++++     +  + T H  RH+FAT + L
Sbjct: 312 DYPSEEN---NYSLLRMFSDQKIN-----KHLKKIAELCNIKKNLTFHVARHTFATTIAL 363

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301
            N   + ++  +LGH +LSTTQ Y  V
Sbjct: 364 LNDVPIETVSKMLGHTKLSTTQKYARV 390


>gi|253569672|ref|ZP_04847081.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840053|gb|EES68135.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 371

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 70/148 (47%), Gaps = 18/148 (12%)

Query: 163 LYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           L+ C   LRIS+ LSL  ++I+D  +       G K   V ++    KA     D+ P  
Sbjct: 223 LFSCMTSLRISDILSLCWKDIVDYSA-------GGKC--VHIITQKNKA----EDIIPIS 269

Query: 221 ---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
              L L       +G+  K L     Q  +++  R  G+  + T H+ R +FAT   + G
Sbjct: 270 EEALGLIGYNSEKKGLVFKGLMRSWTQIPMKEWIRSAGITKNITFHSYRRTFATLQAAAG 329

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            D+R+IQSI+ H  ++TTQ Y  V   N
Sbjct: 330 TDIRTIQSIMAHKSITTTQRYIKVVDAN 357


>gi|237721192|ref|ZP_04551673.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229450027|gb|EEO55818.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 419

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 19/147 (12%)

Query: 162 LLYGC--GLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD 215
            L+ C  G+  S+   LT +N+ + +     I+    K  +   +PL+      I +Y D
Sbjct: 261 FLFSCYTGIPYSDMCMLTNENLSLAEDGIWWIRSSRKKTGVDFEIPLMELPLHIIEKYRD 320

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
           + P        LP++               Y++Q+    G+      HT RH++AT + L
Sbjct: 321 VAP----EGKLLPMYSN--------SSLNHYLKQIAVLCGIERKLVFHTARHTYATEITL 368

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301
           S+G  L ++  +LGH R+ TTQ+Y  V
Sbjct: 369 SHGVPLETVSKMLGHSRIGTTQLYAKV 395


>gi|83719554|ref|YP_440652.1| Fels-2 prophage protein [Burkholderia thailandensis E264]
 gi|83653379|gb|ABC37442.1| Fels-2 prophage protein [Burkholderia thailandensis E264]
          Length = 191

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 16/160 (10%)

Query: 149 TKWIDARNSAILYLLYGC---GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           T   + RN  +L +   C   G R  EA  L    I   Q    ++ K  K R VP+   
Sbjct: 19  TALAEGRNIHVLLISKVCLATGARWGEAEGLRRTQIKGGQIQF-VKTKSSKARSVPITDV 77

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           + + ++ ++     +   +    LF        +   F+  +   R  + LP     H L
Sbjct: 78  LERELIAHFG----NYGDSDTGRLFEA------SSSAFREAVE--RAGVVLPDGQLTHVL 125

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           RH+FA+H + NGG++ ++Q  LGH  L+ T  Y +++ ++
Sbjct: 126 RHTFASHFMMNGGNILALQRALGHHSLTMTMRYAHLSPEH 165


>gi|323161462|gb|EFZ47362.1| resolvase domain protein [Escherichia coli E128010]
          Length = 68

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/39 (48%), Positives = 29/39 (74%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           HT RHS+A H+L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 2   HTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 40


>gi|300817091|ref|ZP_07097310.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 107-1]
 gi|300530443|gb|EFK51505.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 107-1]
          Length = 392

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 28/186 (15%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--------TKWIDARNSAILYLLYGCGLRISEALS 175
           S P  L   +  T+ +  +   +HE         K  D   + ++ +    G R  EA++
Sbjct: 203 SYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICLSTGARWREAVN 262

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           LT   +   + T  ++ KG K R +P+   + + I+    L  F+               
Sbjct: 263 LTRSQVTKYRITF-VRTKGKKNRSIPISKELYEEIMA---LDGFNF-------------- 304

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  FQ      +  + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T
Sbjct: 305 --FTDCYFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMT 362

Query: 296 QIYTNV 301
             Y ++
Sbjct: 363 MRYAHL 368


>gi|293379096|ref|ZP_06625248.1| site-specific tyrosine recombinase XerS [Enterococcus faecium
           PC4.1]
 gi|292642301|gb|EFF60459.1| site-specific tyrosine recombinase XerS [Enterococcus faecium
           PC4.1]
          Length = 361

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 78/161 (48%), Gaps = 8/161 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI  L+ G GLR+SE +++   ++  D++ + +  KG+K   V +   V + +  Y 
Sbjct: 201 RDLAINALILGSGLRLSEVVNINLDDLSLDKNKVVVTRKGNKRDAVNIAAFVMEYLANYL 260

Query: 215 DLCP--FDLNLN---IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
            +    + +  N   + L +++G   K ++    +R + +  +  G  +  + H LRH+ 
Sbjct: 261 AIRKERYKVTENEKALFLAIYQG-EAKRISGIAIERMVAKYSK--GFRVQVSPHKLRHTL 317

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           AT L      L      LGH   +TT +YT++++    D +
Sbjct: 318 ATRLYQQTNSLVLTAQQLGHSSTNTTTLYTHIDNAATIDAL 358


>gi|160884990|ref|ZP_02065993.1| hypothetical protein BACOVA_02986 [Bacteroides ovatus ATCC 8483]
 gi|156109340|gb|EDO11085.1| hypothetical protein BACOVA_02986 [Bacteroides ovatus ATCC 8483]
          Length = 405

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 3/56 (5%)

Query: 247 IRQLRRY---LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           ++ LRR+    G+    T H  RHSFA ++L+NG +++++ S+LGH  L  T+ YT
Sbjct: 331 LKALRRWTKRAGITKHITWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYT 386


>gi|187921634|ref|YP_001890666.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187720072|gb|ACD21295.1| integrase family protein [Burkholderia phytofirmans PsJN]
          Length = 360

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 63/307 (20%), Positives = 131/307 (42%), Gaps = 35/307 (11%)

Query: 16  KERQNWLQNLEI--ERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           ++R++W ++ +I  +  L+K   +  S E    Q+ +FL + +  + ++ T+   +  E 
Sbjct: 22  QQREDWRRDPQIAFDAWLAKQNFRRSSAEVYQAQWGLFLEWLSVRQKSLATVDAHAIAEF 81

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK--------RKITTESNILNMRNLKKSN 123
            A +  ++TQ++      R L  I+  L ++++         +   +      RN  + N
Sbjct: 82  VAGLDVKKTQRV------RYLRLIERVLDHVREIESASTNPARFIAQDGEAAWRN-ARDN 134

Query: 124 SLPRALNEKQALTLVDNV---LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                LN  +   L+ ++   L   S   +W + R+ A++ +  G GL+  EA +LT   
Sbjct: 135 EPTGFLNHAERTALIAHLFSPLPDLSAAQRWRERRDRALIAVFLGGGLKTGEAAALTVSC 194

Query: 181 IMDDQSTLRIQGKGD----KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
           +      + I+        + R+ P   ++  A L    L   +L  N+  P      G+
Sbjct: 195 VHAGMPWVTIESANPMLTRRTRLAPFAAAILDAWLAERRLS--ELAGNLVFPA--SPSGR 250

Query: 237 PLNPGVFQRYIRQLRRYLGLPLS----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFR- 291
           P++     R +  L    G+  S     +  TLR++FA  L  +G +   +   LG  + 
Sbjct: 251 PMHKATMLRAVDALIDGAGIAESRASRASPQTLRNTFAADLFESGVEAELVGQWLGFVQA 310

Query: 292 LSTTQIY 298
           +S  ++Y
Sbjct: 311 VSANRLY 317


>gi|323480978|gb|ADX80417.1| phage integrase family protein [Enterococcus faecalis 62]
          Length = 392

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 71/327 (21%), Positives = 143/327 (43%), Gaps = 57/327 (17%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q W    E  R L++  + +Y+    Q  I   +   +K++      LS  E++ F+   
Sbjct: 66  QKWF---EYYRSLNEQKVATYDKREEQVKILNRWIGGKKLS-----SLSSEELQKFLFIL 117

Query: 79  RTQKIGDRSLKRSLSGIKSFLK-------YLKKRKITTESNI---------LNMRNLKKS 122
           + ++I   ++  + + ++S ++       Y KK+ +  E+ +         L++++LK+S
Sbjct: 118 KEKEIDGVNVGYAKNSLQSLVQVLNMVFNYCKKKNLINENPMKFVKMPKYQLSLKDLKES 177

Query: 123 -NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
            NSL      +    +VD +    ++   + +   S + ++L+  G R+SEAL+L PQ+I
Sbjct: 178 VNSL------EDKFLIVDELRAFLNYGIVYEELPMSVLFHVLFYTGCRVSEALALQPQDI 231

Query: 182 MDDQSTL------RIQGKGDKIRI-----------VPLLPSVRKAILEYYD-LCPFDLNL 223
             +++ +       ++GK    RI           VP+ P V + + E  D L     N 
Sbjct: 232 DFERNEILFYKQTAVKGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRNS 291

Query: 224 NIQLP-------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
           N  +        L  G RG P        ++++     G+      H  RH+ A+ L++ 
Sbjct: 292 NFVVDETYLFVYLDPGKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMAS-LVAE 350

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNS 303
                 ++  LGH   +T++IY ++ S
Sbjct: 351 YCSWDVLKDRLGHTDSTTSKIYRHLTS 377


>gi|268610904|ref|ZP_06144631.1| integrase family protein [Ruminococcus flavefaciens FD-1]
          Length = 391

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 9/111 (8%)

Query: 197 IRIVPLLPSVRKAILEYYDLCP-----FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           IR +PL+P + + + EY   C       D  L +   +F    G  ++P  FQR  + L 
Sbjct: 268 IRTIPLMPYIAERLTEYK--CEQEQHFKDNGLPMSEMVFTTKNGNLVDPRNFQRDFKLLL 325

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNV 301
           +  GL      H LRH+FAT  L +G +++++  ILGH  ++ T   Y +V
Sbjct: 326 KRNGLH-EINVHGLRHTFATRALESGMNVKTLSKILGHSSVAFTLDTYAHV 375


>gi|229825085|ref|ZP_04451154.1| hypothetical protein GCWU000182_00435 [Abiotrophia defectiva ATCC
           49176]
 gi|306826701|ref|ZP_07460004.1| transposase [Streptococcus pyogenes ATCC 10782]
 gi|229790457|gb|EEP26571.1| hypothetical protein GCWU000182_00435 [Abiotrophia defectiva ATCC
           49176]
 gi|304431149|gb|EFM34155.1| transposase [Streptococcus pyogenes ATCC 10782]
          Length = 396

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 26/164 (15%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRI----QGKGDK------------IRIVPLL 203
           L +L G GLRISE   LT  +I  +  T+ +    Q  G K            IR +P+ 
Sbjct: 216 LIILLGTGLRISEFCGLTDSDIDFENRTINVDHQLQYSGKKSYRIETPKTENGIRKIPMS 275

Query: 204 PSVRKA---ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL------RRYL 254
             V +A   +++      F ++      LF    G P N   +    R+L      +   
Sbjct: 276 DRVLEALQRVMQNRRKSDFTVDGYTGF-LFLTRNGTPQNYINYDIMFRKLVEKYNKKHEE 334

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            LP+ TT HTLRH+F T++ + G + +++Q ++GH  ++ T  Y
Sbjct: 335 VLPVVTTPHTLRHTFCTNMANAGMNPKALQYLMGHANITMTLNY 378


>gi|172055243|ref|YP_001806570.1| integrase/recombinase [Cyanothece sp. ATCC 51142]
 gi|171701524|gb|ACB54504.1| probable integrase/recombinase [Cyanothece sp. ATCC 51142]
          Length = 211

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 13/153 (8%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R++ ++ L Y  GLR+SE  +L  + I  D     +Q      R+   LPSV    L   
Sbjct: 59  RDATMILLTYRHGLRVSELCALRWEQIDFDTGLFHVQ------RLKQGLPSVHP--LRGP 110

Query: 215 DLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           +L      L  + P    LF   RG P+    F++ + ++     +      H LRH+  
Sbjct: 111 ELRALR-KLKRESPPSSYLFVTERGSPMTTAGFRKLLTRVAECSSISFPVHPHMLRHACG 169

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             L+++G D+R IQ  LGH  +  T  YT +++
Sbjct: 170 YKLVNDGHDIRMIQQYLGHKNIQHTVRYTTLSA 202


>gi|126454019|ref|YP_001068113.1| integrase/recombinase [Burkholderia pseudomallei 1106a]
 gi|242316537|ref|ZP_04815553.1| putative integrase/recombinase XerD [Burkholderia pseudomallei
           1106b]
 gi|126227661|gb|ABN91201.1| integrase/recombinase [Burkholderia pseudomallei 1106a]
 gi|242139776|gb|EES26178.1| putative integrase/recombinase XerD [Burkholderia pseudomallei
           1106b]
          Length = 310

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 123/282 (43%), Gaps = 34/282 (12%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
           T ++Y      FL + A      IT +Q +   S+ E++       T+     ++K+ L+
Sbjct: 30  TRRAYARAASDFLTWCADAGVSSITAVQPLHVASWVELQ-------TRTHAASTVKQRLA 82

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLK---KSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            I+    +L   ++   ++  ++R+     ++ + P  L+  +A  L+D++ + T     
Sbjct: 83  AIRHLFDWLVTGQVVPVNSAASVRSPSHTVRTCATP-VLDPAEARQLLDSIDVSTP---- 137

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL--RIQGKGDKIRIVPLLPSVRK 208
            I  R+ A++ L+     RI  AL++   ++   Q  L  R++ KGDK   +P   ++  
Sbjct: 138 -IGLRDRALIALMVFSFARIGAALAMRVDDVYVQQRRLWIRLREKGDKAHAMPCHHTLEM 196

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYL---------GLPL 258
           A+  Y D     +  + +  LFR I RG      + +  + Q   Y+         G+  
Sbjct: 197 ALRAYLD--GTGIVFDPKGALFRTIARG---TGQLSETTLAQANAYVMVRRRAAAAGIAT 251

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              +H LR +  T  L NGG L +  +I  H    +TQ Y +
Sbjct: 252 KIGSHALRATGITTYLRNGGTLENAAAIANHVSTRSTQRYGD 293


>gi|44286|emb|CAA37686.1| integrase [Mycobacterium fortuitum]
 gi|226924|prf||1611403A sul3 assocd ORF 2M
          Length = 303

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 67/157 (42%), Gaps = 37/157 (23%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207
           LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R         
Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198

Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                                  +A   +     F  + +   P    +R   +    FQ
Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
           R  ++     G+    T HTLRHSFAT LL +G D+R
Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIR 295


>gi|317055794|ref|YP_004104261.1| integrase family protein [Ruminococcus albus 7]
 gi|315448063|gb|ADU21627.1| integrase family protein [Ruminococcus albus 7]
          Length = 415

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 73/356 (20%), Positives = 149/356 (41%), Gaps = 81/356 (22%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF---ISKRRTQKI 83
           +++GL   T  +Y+    QF+       E K     +  L  T++RAF   ++  R  K+
Sbjct: 82  LKKGLKDNTFSNYKYSYEQFV-------EPKFGRIKLTDLKRTDVRAFYNYLADERHIKV 134

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILN-------MRNLKKSNSLPRALNEKQALT 136
                  S+  I + L  +   ++  E + L        ++ LK+++S     + ++ALT
Sbjct: 135 N------SIDCIHTVLHQV--LELAVEDDYLRYNPSDNALKELKRAHS--SDFDTRRALT 184

Query: 137 L-----VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           L      +N L  ++    W+      I  ++   G+R+ E   L  +++  +++T+ + 
Sbjct: 185 LEEQQIFENYLADSAKYAHWL-----PIFTVMLWTGMRVGELTGLRWEDVDFEENTISVN 239

Query: 192 --------GKGDKI-------------RIVPLLPSVRKAIL-------EYYDLCPFDLNL 223
                   GK +               R +P+LP VR+A+L       E    C  +++ 
Sbjct: 240 HTLVYFSMGKQNGCTFAVNTPKTEAGKRAIPMLPKVREALLKEKAFQEEVGITCKAEVD- 298

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-------------STTAHTLRHSFA 270
                +F    G   + G   + ++++ R     L             + + H+LRH+F 
Sbjct: 299 GFSNFIFVNRFGNVQHQGTLNKALKRIIRDCNYELLDNSGGKEVTTLPNFSNHSLRHTFT 358

Query: 271 THLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           T +   G +++++Q ILGH  + TT  IY +   +     M+  +++   S+T +D
Sbjct: 359 TRMCEAGVNIKAMQDILGHADVETTLGIYADATKELKSKEMIG-FEEYFKSLTDED 413


>gi|293373253|ref|ZP_06619613.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292631776|gb|EFF50394.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 441

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQ----LRRYLG--LPLSTTAHTLRHSFATHL-LS 275
           L+I L +    R +  +  VF  Y R+    L R LG       T H  RH+F TH+ LS
Sbjct: 307 LDIPLKIIEKYREQRHDDKVFNLYKREYFIMLTRKLGEVYGFELTFHKARHNFGTHITLS 366

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            G  + ++  ++GH R+ TTQ+Y  V  K   + M
Sbjct: 367 MGIPIETVGKMMGHMRIETTQLYAKVTDKKVDEDM 401


>gi|34540596|ref|NP_905075.1| integrase [Porphyromonas gingivalis W83]
 gi|34541125|ref|NP_905604.1| integrase [Porphyromonas gingivalis W83]
 gi|34396909|gb|AAQ65974.1| integrase [Porphyromonas gingivalis W83]
 gi|34397441|gb|AAQ66503.1| integrase [Porphyromonas gingivalis W83]
          Length = 409

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 34/196 (17%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLT 177
           K+    P+AL+ +    + D V+    H +  I AR+      L+ C  G   ++A+S+T
Sbjct: 217 KQEEKTPKALSRESFEKIRDLVI--PEHRSSHILARD----LFLFACYTGTSYADAVSVT 270

Query: 178 PQNIM-DDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
             N+  DD+ +L ++ +  K  +   V LLP   + I +Y D        + +  LF   
Sbjct: 271 RDNLFTDDEGSLWLKYRRKKNELQACVKLLPEALELIEKYND--------DTRPTLF--- 319

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLST----TAHTLRHSFATHL-LSNGGDLRSIQSILG 288
                 P ++   +R+L + L +        T H  RHSFA+ + L  G  + +I  +LG
Sbjct: 320 ------PMLYHPNLRRLMKCLAVLADIKEDLTYHAGRHSFASLITLEAGVPIETICKMLG 373

Query: 289 HFRLSTTQIYTNVNSK 304
           H  L TTQ Y  V  K
Sbjct: 374 HSNLQTTQRYAKVTPK 389


>gi|134299674|ref|YP_001113170.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134052374|gb|ABO50345.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 283

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 65/154 (42%), Gaps = 22/154 (14%)

Query: 155 RNSAILYLLYGCGLRISEA--LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           R+ AI+ LL   G+RISEA  L L+  N+   +  +R  GKG K R+V +   V  AI  
Sbjct: 131 RDYAIVTLLAYSGMRISEAVNLKLSDVNLTAREIVVR-YGKGKKQRLVIINDKVVNAIKT 189

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR------YLGLPLSTTAHTLR 266
           Y             L     +R +        R   ++ R      + G     T H LR
Sbjct: 190 Y-------------LSERTKLRNRDSEYLFVSRESCRISRTRINHIFNGYSDKITPHMLR 236

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           H F ++ L  G  +  +    GH  + TT IYTN
Sbjct: 237 HFFCSYALEKGWSVHEVAGQAGHANIHTTLIYTN 270


>gi|237721193|ref|ZP_04551674.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|253571057|ref|ZP_04848465.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|229450028|gb|EEO55819.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|251840006|gb|EES68089.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 434

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQ----LRRYLG--LPLSTTAHTLRHSFATHL-LS 275
           L+I L +    R +  +  VF  Y R+    L R LG       T H  RH+F TH+ LS
Sbjct: 300 LDIPLKIIEKYREQRHDDKVFNLYKREYFIMLTRKLGEVYGFELTFHKARHNFGTHITLS 359

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            G  + ++  ++GH R+ TTQ+Y  V  K   + M
Sbjct: 360 MGIPIETVGKMMGHMRIETTQLYAKVTDKKVDEDM 394


>gi|218262144|ref|ZP_03476706.1| hypothetical protein PRABACTJOHN_02379 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223578|gb|EEC96228.1| hypothetical protein PRABACTJOHN_02379 [Parabacteroides johnsonii
           DSM 18315]
          Length = 408

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 69/147 (46%), Gaps = 16/147 (10%)

Query: 162 LLYGC--GLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD 215
            L+ C  GL   +   L  ++++ D+Q  L I+    K ++   +PLL  +  AILE YD
Sbjct: 250 FLFQCFTGLAFIDVSELKAEHLVSDNQGNLWIRKARQKTKVMCNIPLL-DIPLAILEKYD 308

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
             P        LP+       P N  +   Y++++     +  + T HT RH+F+T + L
Sbjct: 309 GHPLAKKKGTLLPV-------PCNQKL-NNYLKEIADLCSIKKNLTTHTGRHTFSTVVAL 360

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +N   L ++  +LGH     TQ Y  V
Sbjct: 361 ANNVSLENVAKMLGHTNTKMTQRYAKV 387


>gi|210622955|ref|ZP_03293460.1| hypothetical protein CLOHIR_01408 [Clostridium hiranonis DSM 13275]
 gi|210153921|gb|EEA84927.1| hypothetical protein CLOHIR_01408 [Clostridium hiranonis DSM 13275]
          Length = 377

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 24/161 (14%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK--GDKIRIVPL-LPSVRKAILE 212
           N+  L LL+  GLRI EAL L  ++I  D   + ++       +R   L  P  + +I +
Sbjct: 191 NNMCLLLLHT-GLRIGEALGLQWEDIDFDNKIIHVRHTLIAPNVRECKLSTPKTKTSIRD 249

Query: 213 YY------------------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            Y                  +   F +  N    +F    G  L+   F   + ++ R  
Sbjct: 250 IYFNDTVEKVFKNIKKSQNENRLKFGVLYNCNNMVFTHEDGSFLDHHHFTNMVAKINRKT 309

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            +  S   HT RH+ AT LL  G +++ +Q+ LGH  +STT
Sbjct: 310 NINFS--MHTFRHTHATMLLQAGANMKDVQARLGHADISTT 348


>gi|297172260|gb|ADI23238.1| integrase [uncultured nuHF2 cluster bacterium HF0770_13K08]
          Length = 342

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 15/142 (10%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
            L+GC  GL +    +LT + I  D      + K      VPL  +    I + +D  P 
Sbjct: 197 FLFGCFTGLSLGNLETLTYKQIESDTVKF-FRSKTKTWHHVPLNETALSLIGDTFDCDPN 255

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
               N     +             Q  + +  +  G+      H  RH+FAT  LS+G D
Sbjct: 256 GRIFNTPSRRYS------------QTLVGKWGKQAGIKKHVHMHVSRHTFATLNLSSGAD 303

Query: 280 LRSIQSILGHFRLSTTQIYTNV 301
           + ++  ++GH +L TTQIY  V
Sbjct: 304 IYTVSKLIGHKKLDTTQIYAKV 325


>gi|256851111|ref|ZP_05556500.1| site-specific tyrosine recombinase XerS [Lactobacillus jensenii
           27-2-CHN]
 gi|260660535|ref|ZP_05861450.1| site-specific tyrosine recombinase XerS [Lactobacillus jensenii
           115-3-CHN]
 gi|282932250|ref|ZP_06337694.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1]
 gi|297205976|ref|ZP_06923371.1| site-specific tyrosine recombinase XerS [Lactobacillus jensenii
           JV-V16]
 gi|256616173|gb|EEU21361.1| site-specific tyrosine recombinase XerS [Lactobacillus jensenii
           27-2-CHN]
 gi|260548257|gb|EEX24232.1| site-specific tyrosine recombinase XerS [Lactobacillus jensenii
           115-3-CHN]
 gi|281303645|gb|EFA95803.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1]
 gi|297149102|gb|EFH29400.1| site-specific tyrosine recombinase XerS [Lactobacillus jensenii
           JV-V16]
          Length = 351

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 6/154 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI+ L+ G G+R+SE  S+   ++   ++TL +  KG +   +P+       I  Y 
Sbjct: 185 RDIAIIALILGTGVRVSECSSINISDLNLKEATLDLTRKGGQKDSIPVASWTLPYISAYA 244

Query: 215 DL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           ++       + N       +   +   + P   +R + +  +  G PL  T H LRH+ A
Sbjct: 245 EVRTKRYHAEKNDKAFFLTYYHKKTSRITPNGIERLVSKYSKAFGHPL--TPHKLRHTLA 302

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + L     D   +   LG    + T +YT+V+ K
Sbjct: 303 SELYGVTKDQVLVAQQLGQKGTTATDLYTHVDQK 336


>gi|148978334|ref|ZP_01814839.1| Hypothetical bacteriophage integrase [Vibrionales bacterium SWAT-3]
 gi|145962493|gb|EDK27771.1| Hypothetical bacteriophage integrase [Vibrionales bacterium SWAT-3]
          Length = 342

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 29/150 (19%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEY 213
           S I+ +    G R  E ++L P N+    S  RI+    K  K R VP+   + K     
Sbjct: 183 SKIVDICLSTGSRWRETVTLKPMNL----SPYRIRFTNTKTGKPRTVPISEELYKK---- 234

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL--GLPLSTTAHTLRHSFAT 271
                  L  N+   LF        +P   Q+ + ++   L   LP     H LRH+FA+
Sbjct: 235 -------LQTNVSGNLFS------YDP---QKELYEIMDSLEFNLPKGQKVHVLRHTFAS 278

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H + NGG++ +++ ILGH  ++ T  Y ++
Sbjct: 279 HFIMNGGNILTLKEILGHASITQTMAYAHL 308


>gi|282907695|ref|ZP_06315537.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|283959808|ref|ZP_06377249.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|282328600|gb|EFB58871.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|283789400|gb|EFC28227.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus
           A017934/97]
          Length = 404

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 84/208 (40%), Gaps = 32/208 (15%)

Query: 132 KQALTLVDNVLLHTSHETKWIDARN----SAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           K+ L   D ++ H  H T+    RN     A++      G+RI E L++   N+  +  T
Sbjct: 192 KELLECFDYLIKHKRHATR---KRNYEMVKALVEFQINNGMRIGELLAIKTDNVDVENKT 248

Query: 188 LRIQGKGDKI--------------------RIVPLLPS----VRKAILEYYDLCPFDLNL 223
           L I G  + +                    R + L       ++K +LE      ++   
Sbjct: 249 LEIDGTINWVTDVVTGAFGVKETTKTSKSYRTIGLTAQSINLLKKLMLENKKENQWNDKF 308

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             +  +F    G P++       I++      +    T HTLRH+  + L   G +L++I
Sbjct: 309 IDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQLGINLKAI 368

Query: 284 QSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           Q  +GH    TT +IYT+V  K   D M
Sbjct: 369 QERVGHSDYKTTLEIYTHVTDKMAKDMM 396


>gi|257879448|ref|ZP_05659101.1| site-specific recombinase [Enterococcus faecium 1,230,933]
 gi|323142571|ref|ZP_08077387.1| site-specific recombinase, phage integrase family
           [Phascolarctobacterium sp. YIT 12067]
 gi|257813676|gb|EEV42434.1| site-specific recombinase [Enterococcus faecium 1,230,933]
 gi|322413004|gb|EFY03907.1| site-specific recombinase, phage integrase family
           [Phascolarctobacterium sp. YIT 12067]
          Length = 378

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 97/226 (42%), Gaps = 39/226 (17%)

Query: 92  LSGIKSFLKYLKK--RKITTESNILNM-RNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           LS I++ L++  +  + I+ ++  + + R  K+   L RA  EK    L  N        
Sbjct: 144 LSLIRNVLQFATRNGKAISCDARSIQIKRQTKEMRVLSRAEQEKLCQYLYSN-------- 195

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-------RIQGKGD---KIR 198
              +D+ N  IL  L+  GLR+ E  +L  +++     T+       RIQ + +   K R
Sbjct: 196 ---LDSCNIGILVCLFT-GLRVGEICALRWEDVSFSDYTIHVHQTLQRIQDRTNSEYKTR 251

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG---------KPLNPGVFQRYIRQ 249
           IV   P    +I       P    L   L   +              PL P   Q + ++
Sbjct: 252 IVVTTPKSACSIRTI----PVPHGLMTILTAHKASSTGYILTNSDQNPLEPRTMQNHFKK 307

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           + +  G+  S   H+LRH+FAT  +  G D++S+  ILGH  ++ T
Sbjct: 308 VLKNSGIT-SANYHSLRHTFATRCIELGFDVKSLSEILGHASVNIT 352


>gi|126698677|ref|YP_001087574.1| integrase [Clostridium difficile 630]
 gi|115250114|emb|CAJ67935.1| Integrase Tn1549-like, CTn4-Orf34 [Clostridium difficile]
          Length = 397

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 77/167 (46%), Gaps = 35/167 (20%)

Query: 162 LLYGCGLRISEALSLTPQNI-MD------DQSTLRIQGKGDKI---------RIVPLLPS 205
           +L G GLRISE   LT  +I +D      D   L+I   G  +         RI+P+   
Sbjct: 218 ILLGTGLRISELCGLTEADIDLDKQLINVDHQLLKIADVGYYVETPKTKSGNRIIPMSEK 277

Query: 206 VRKA--------------ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           V +A              ILE Y    F LN N  LP    +  + +  G+ ++Y +  +
Sbjct: 278 VLEAFQRVLNKRKYTQPVILEGYTKFLF-LNRN-GLPKV-AVNYESMFRGLVRKYNKTQK 334

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             + LP   T HTLRH+F T L + G + +++Q I+GH  ++ T  Y
Sbjct: 335 --VALPKVMTPHTLRHTFCTTLANAGMNPKALQYIMGHSNINMTLNY 379


>gi|298251725|ref|ZP_06975528.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297546317|gb|EFH80185.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 318

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 76/179 (42%), Gaps = 35/179 (19%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI------QGKGDKIRIVPLLPSVRKAIL 211
           A+  L    G R+SE  +L    I D Q + R       +GKG K R +PL+   R+ + 
Sbjct: 133 ALATLFRYAGPRVSEVAAL---QIPDVQVSARRGLLIIRRGKGLKHREIPLVQEAREPLD 189

Query: 212 EYYD--------------LCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYL 254
            Y+               L    +    + P   LF G RG PL     +  I +L +  
Sbjct: 190 AYFTYREHLAERWRERAVLRGESVASWSRWPDRHLFLGQRG-PLAERGIREIIAKLGQAA 248

Query: 255 GLPLSTTAHTLRHSFATHLLSNGG--------DLRSIQSILGHFRLSTTQIYTNVNSKN 305
            LP     H LRH+FA  LL             L +IQ +LGH  ++TT IYT V++ +
Sbjct: 249 KLPSPLGPHDLRHTFAKALLDPAAYGLDRPPMPLPAIQQLLGHADIATTTIYTRVSADD 307


>gi|237727393|ref|ZP_04557874.1| site-specific recombinase [Bacteroides sp. D4]
 gi|313146590|ref|ZP_07808783.1| site-specific recombinase [Bacteroides fragilis 3_1_12]
 gi|229434249|gb|EEO44326.1| site-specific recombinase [Bacteroides dorei 5_1_36/D4]
 gi|313135357|gb|EFR52717.1| site-specific recombinase [Bacteroides fragilis 3_1_12]
          Length = 378

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 9/109 (8%)

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K D +  +PLL  + + ILE Y   P      + LP+       P N  +   Y++++  
Sbjct: 261 KTDNMCDIPLL-DIPRLILEKYQSNPICNEKGLLLPV-------PSNQRM-NSYLKEIAD 311

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             G+  + + H  RH+FA+  ++N   L SI  +LGH  + TT+IY  +
Sbjct: 312 VCGIQKNLSTHIARHTFASLAIANKVSLESIAKMLGHTDIRTTRIYAKI 360


>gi|326955337|gb|AEA29030.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
          Length = 346

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 112/291 (38%), Gaps = 18/291 (6%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            E  ++R+N +    +    S+ T ++Y  D   F  +      E    + +    Y   
Sbjct: 27  VERARDRRNRVLAAFLLSCRSEHTRRAYAGDVTDFFDWCDQVGLEVFAARRVHLDGYVTA 86

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
            A    R  +     ++ R L+ +  F  Y     +   S +  +R        PR  ++
Sbjct: 87  LAAPRPRTGRPAAASTVARRLAALAGFYDYAADEDLIESSPVTRVRR-------PRVESD 139

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLR 189
             +  L  +              R +A++ LL   GLRI EALS   +++  ++    LR
Sbjct: 140 SPSTGLDRDEQRALLAAAAADGPRATALVTLLLHNGLRIDEALSRDVEHLQVERGHRVLR 199

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           +  KG +     L     +A+  Y       L+     P+F    G+ ++     R IR+
Sbjct: 200 LHRKGGRAATAALAAPTARALDAY-------LDGRETGPIFTTRTGRRMDGPAAWRLIRR 252

Query: 250 LRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           L    GL  +     H+LRH+F T  L    +LR +Q   GH    TT+ Y
Sbjct: 253 LAHTAGLASADRIGPHSLRHTFVTTALDAKVELRDVQDAAGHADPRTTRRY 303


>gi|325300191|ref|YP_004260108.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324319744|gb|ADY37635.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 406

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 9/109 (8%)

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K D +  +PLL  + + ILE Y   P      + LP+       P N  +   Y++++  
Sbjct: 289 KTDNMCDIPLL-DIPRLILEKYQSNPICNEKGLLLPV-------PSNQRM-NSYLKEIAD 339

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             G+  + + H  RH+FA+  ++N   L SI  +LGH  + TT+IY  +
Sbjct: 340 VCGIQKNLSTHIARHTFASLAIANKVSLESIAKMLGHTDIRTTRIYAKI 388


>gi|307564424|ref|ZP_07626965.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307346784|gb|EFN92080.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 431

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 27/161 (16%)

Query: 158 AILYLLYGC--GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVRKAIL 211
           A L  ++ C  G+ I++  +L  ++I    D Q  +R + +  K+  IVPL P V +AI+
Sbjct: 238 ARLMFVFSCFTGMAIADMETLQYRHIQTAADGQRYIRKERQKTKVEFIVPLHP-VAEAII 296

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA--------- 262
            +   C  +   N +    +  +G  L   VFQ +    R  +G  LS            
Sbjct: 297 SH---CRNEQARNEEQQTVKE-KGDSL---VFQPHCS--RSVMGKNLSIVGKACGIRQRL 347

Query: 263 --HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             H  RH+F T  LS G  + SI  ++GH  +S+TQIY  V
Sbjct: 348 SYHMARHTFGTMCLSAGIPIESIAKMMGHTSISSTQIYAQV 388


>gi|302538708|ref|ZP_07291050.1| predicted protein [Streptomyces sp. C]
 gi|302447603|gb|EFL19419.1| predicted protein [Streptomyces sp. C]
          Length = 354

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 17/164 (10%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQ-GK-----GDKIRIVPLLP 204
           AR+ A+L   Y   +R+SE + L   ++   +     L ++ GK     G + R  P+L 
Sbjct: 176 ARDYALLRTPYLSAVRVSELVCLDQADVHPQLGPSGKLHVRFGKAANTSGPRPRWAPMLE 235

Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-- 260
            + + IL +Y  D+ P         PLF    G+ L  G  +  + +L    G+      
Sbjct: 236 GLDQ-ILAWYLQDVRPL---FPATAPLFCDEDGQALKAGTVRDRLARLLDLEGVGWDERF 291

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           T H LR + ATH    G DL ++Q +LGH  +++T  Y   + K
Sbjct: 292 TPHALRRACATHQYERGMDLIAVQQLLGHRHIASTMAYVKPSQK 335


>gi|300923585|ref|ZP_07139615.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|300420168|gb|EFK03479.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
          Length = 204

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 67/148 (45%), Gaps = 5/148 (3%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           L Y   LR+S+  S+   +I  D   L  Q  G+ +R V L  + ++ I    +  P  +
Sbjct: 52  LGYELMLRVSDLRSIRYDDIKGDHLVLSQQKTGESVR-VRLTDTAKRIIAARREANPDHV 110

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
            L +QL   R  +GKP++       I      LGL LST  H++R S  T    NG D+ 
Sbjct: 111 YL-LQLDSHRS-KGKPVSRSKLHEEISYAGEKLGLNLST--HSMRKSKPTIGYDNGEDIA 166

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            I   LGH  LS+T  Y     +   D+
Sbjct: 167 VISKALGHKSLSSTLHYIGATQRKVDDF 194


>gi|293370975|ref|ZP_06617517.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292633905|gb|EFF52452.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 409

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 70/155 (45%), Gaps = 20/155 (12%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD 215
            ++ C  GL   +   LT  NI       L I  K  K      VPLL   +  + +Y  
Sbjct: 247 FVFACFTGLAYIDVAGLTQDNICKSFDGNLWIMTKRQKTNTDVNVPLLDIPKMILKKYKG 306

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
             P   N  I LP+   I  + LN      Y++++    G+  + T H  RH+FAT   L
Sbjct: 307 KLP---NGKI-LPV---ISNQKLNA-----YLKEIADVCGIKKNLTFHLARHTFATTTTL 354

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGD 308
           S G  + ++  +LGH  + TTQIY  + NSK G D
Sbjct: 355 SKGVPIETVSKMLGHTNIETTQIYARITNSKIGSD 389


>gi|288926490|ref|ZP_06420409.1| integrase [Prevotella buccae D17]
 gi|288336702|gb|EFC75069.1| integrase [Prevotella buccae D17]
          Length = 409

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 34/196 (17%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLT 177
           K+    P+AL+ +    + D V+    H +  I AR+      L+ C  G   ++A+S+T
Sbjct: 217 KQEEKTPKALSRESFEKIHDLVI--PEHRSSHILARD----LFLFACYTGTSYADAVSVT 270

Query: 178 PQNIM-DDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
             N+  DD+ +L ++ +  K  +   V LLP   + I +Y D        + +  LF   
Sbjct: 271 RDNLFTDDEGSLWLKYRRKKNELQACVKLLPEALELIEKYND--------DTRPTLF--- 319

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLST----TAHTLRHSFATHL-LSNGGDLRSIQSILG 288
                 P ++   +R+L + L +        T H  RHSFA+ + L  G  + +I  +LG
Sbjct: 320 ------PMLYHPNLRRLMKCLAVLADIKEDLTYHAGRHSFASLITLEAGVPIETICKMLG 373

Query: 289 HFRLSTTQIYTNVNSK 304
           H  L TTQ Y  V  K
Sbjct: 374 HSNLQTTQRYAKVTPK 389


>gi|167761667|ref|ZP_02433794.1| hypothetical protein BACSTE_00001 [Bacteroides stercoris ATCC
           43183]
 gi|167700462|gb|EDS17041.1| hypothetical protein BACSTE_00001 [Bacteroides stercoris ATCC
           43183]
          Length = 123

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 32/47 (68%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           GL    + HT RH+ AT L+ NG ++ ++Q +LGH  + TTQ+YTN+
Sbjct: 48  GLSKKISFHTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTNI 94


>gi|38637722|ref|NP_942696.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527060|gb|AAP85810.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 327

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 74/158 (46%), Gaps = 19/158 (12%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV-PLLPSVRKAILEYYDL 216
           +L LLYGCGLR+ E L L   ++  ++  L ++ GK  K R+V P LP V++  L  Y  
Sbjct: 148 VLRLLYGCGLRVGEVLHLRVADVDLERGILTVRDGKFRKDRLVPPALPLVQR--LRVYAQ 205

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-----HTLRHSFAT 271
              D   +     F      PL+        R+L    G+P +        H LRH++A 
Sbjct: 206 VMGDRPSDAY--FFPSPSDGPLSHSSIYWLYRELLLRSGIPHAGRGKGPRVHDLRHAYAV 263

Query: 272 HLL----SNGGDLRS----IQSILGHFRLSTTQIYTNV 301
           H L     +G DL +    + + +GH  L+ TQ Y ++
Sbjct: 264 HALLRWCQDGADLDAKLPVLATYMGHQSLAGTQRYLHL 301


>gi|329770511|ref|ZP_08261889.1| hypothetical protein HMPREF0433_01653 [Gemella sanguinis M325]
 gi|328836260|gb|EGF85929.1| hypothetical protein HMPREF0433_01653 [Gemella sanguinis M325]
          Length = 169

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 5/151 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AIL L    G+R++E  +L  +++    S + +  KG+K   V +  S    + +Y 
Sbjct: 12  RDLAILTLFLKSGIRVNELANLKVKDVDFLNSEINVIRKGNKTDTVIITQSALDKLNDY- 70

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL- 273
            L      L  +  +F     K L+    Q+ + +      +P+S   H LRHS+ T L 
Sbjct: 71  -LSSLGFKLEREDYVFINKNKKGLSIRAIQKLVMKYTDAFNVPMS--PHKLRHSYGTKLA 127

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           L   G++  I + +GH    T+ +Y N + K
Sbjct: 128 LKTNGNIPIIMTQMGHSNSDTSMLYINESKK 158


>gi|300946488|ref|ZP_07160757.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 116-1]
 gi|300453832|gb|EFK17452.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 116-1]
          Length = 246

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +  T HT RHS+A HL  +G   R +QS+LGH    +T+IYT V S
Sbjct: 170 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFS 215


>gi|269939603|emb|CBI47969.1| transposase B from transposon Tn554 [Staphylococcus aureus subsp.
           aureus TW20]
          Length = 609

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 115/282 (40%), Gaps = 32/282 (11%)

Query: 38  SYECDTRQFLI-FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS--- 93
           SY  D  Q L  F  F   +   +Q + QL+  EI A++S+     I   ++   +S   
Sbjct: 215 SYVSDIAQKLKEFFNFLDIKFKHVQRVHQLTRVEIEAYLSELNMMGIKPSTITGRISILE 274

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
           G+ S L  L+   + ++  I      K   + PR ++E     +++ +  H     ++I 
Sbjct: 275 GLFSTLHRLEWDDVPSKLLIYPEDYPKIPRAKPRFIDE----FVLEQLNSHLDKLPEYI- 329

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----QGKGDKIRIVPLLPSVRKA 209
              + +  ++  CG+RISE  +L    +++D+         Q K  K  IVP+   V   
Sbjct: 330 ---ATMTMIVQECGMRISELCTLKKGCLLEDKDGDYFLKYYQWKMKKEHIVPISKEVVLL 386

Query: 210 ILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQ------RYIRQLRRYLGLPLS 259
           I    D       ++ + P    LF    G PL    F+       Y + +   LG    
Sbjct: 387 IKVRED------KVSEEFPDSEYLFPRKDGSPLKQKTFRGELNKLAYEQNIVDKLGEIYR 440

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             AH  RHS  T +++NG     +Q  LGH     T  Y ++
Sbjct: 441 FHAHAFRHSVGTRMINNGVPQHIVQKFLGHESPEMTSRYAHI 482


>gi|269939561|emb|CBI47922.1| transposase B 1 [Staphylococcus aureus subsp. aureus TW20]
 gi|269941141|emb|CBI49528.1| transposase B 2 [Staphylococcus aureus subsp. aureus TW20]
          Length = 630

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 115/282 (40%), Gaps = 32/282 (11%)

Query: 38  SYECDTRQFLI-FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS--- 93
           SY  D  Q L  F  F   +   +Q + QL+  EI A++S+     I   ++   +S   
Sbjct: 236 SYVSDIAQKLKEFFNFLDIKFKHVQRVHQLTRVEIEAYLSELNMMGIKPSTITGRISILE 295

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
           G+ S L  L+   + ++  I      K   + PR ++E     +++ +  H     ++I 
Sbjct: 296 GLFSTLHRLEWDDVPSKLLIYPEDYPKIPRAKPRFIDE----FVLEQLNSHLDKLPEYI- 350

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----QGKGDKIRIVPLLPSVRKA 209
              + +  ++  CG+RISE  +L    +++D+         Q K  K  IVP+   V   
Sbjct: 351 ---ATMTMIVQECGMRISELCTLKKGCLLEDKDGDYFLKYYQWKMKKEHIVPISKEVVLL 407

Query: 210 ILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQ------RYIRQLRRYLGLPLS 259
           I    D       ++ + P    LF    G PL    F+       Y + +   LG    
Sbjct: 408 IKVRED------KVSEEFPDSEYLFPRKDGSPLKQKTFRGELNKLAYEQNIVDKLGEIYR 461

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             AH  RHS  T +++NG     +Q  LGH     T  Y ++
Sbjct: 462 FHAHAFRHSVGTRMINNGVPQHIVQKFLGHESPEMTSRYAHI 503


>gi|150389382|ref|YP_001319431.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
 gi|149949244|gb|ABR47772.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
          Length = 366

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 95/197 (48%), Gaps = 24/197 (12%)

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL-- 176
           +K+ N   R +   +A T V+N++       +W   R+  I  ++Y  G RI E L L  
Sbjct: 169 VKEVNRAVRLITNDEADTFVENLV-------RW---RDRLIFKIMYISGARIQEVLDLKI 218

Query: 177 ------TPQNIMDDQSTLRIQGKGDKIRI-VPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
                  P +++     ++ +GK   + + + LL  +   I+E  +     +N  I +  
Sbjct: 219 EQIPTPDPTSMVAVLENIKSKGKNRDLYMPMYLLEEIDNFIMEERNQVD-TVNSFIFVSY 277

Query: 230 FRGIRGKPLN-PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
                GK L   G+++ + R +++  G+  +   H LRH+  T+ + +G D+  +Q I G
Sbjct: 278 QTQYLGKKLTYRGIYEVFNR-VKKKTGIYFN--FHDLRHTCVTNFVESGLDISVVQKIAG 334

Query: 289 HFRLSTTQIYTNVNSKN 305
           H  ++TT+ YT+++ K+
Sbjct: 335 HKHVTTTENYTHLSKKH 351


>gi|332522639|ref|ZP_08398891.1| site-specific recombinase, phage integrase family [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332313903|gb|EGJ26888.1| site-specific recombinase, phage integrase family [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 358

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 136/315 (43%), Gaps = 55/315 (17%)

Query: 46  FLIFLAFYTEEKITIQTIRQLSYT--EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           F I+   Y +  +++ T ++  YT  +IR +    R  KI + S+ +  S I  FL+   
Sbjct: 65  FKIWSNTYKKNNVSLVTWKKYEYTLSKIRIYF---RDAKIKNISVSQYQSAINQFLEDYS 121

Query: 104 KR-------------KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--LLHTSHE 148
            R             K+    NI+       +       +E++ +  +D    LL T+  
Sbjct: 122 WRTVKMFNTHIRQCLKVAMHENIVQKDFTTFTKIAQNEKDEEKDILQIDEYFDLLETTST 181

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----------QGKG---- 194
            K+   R+   +YL+   GLR SEA+ LT  +I  + ST+ I          +G G    
Sbjct: 182 IKY---RSHFFIYLVAVTGLRFSEAMGLTVNDINFENSTININKTFKVYGPKRGYGPTKN 238

Query: 195 -DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
              +RIVP+       + EY           I+  +F  +    +N        + L++ 
Sbjct: 239 KSSMRIVPIDDRTLSLLSEYVK------RFEIKDRVFVELSNTAVN--------KTLKKL 284

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMME 312
           +G  +    H+LRH++ ++L+ N  ++  +  ++GH   +TT  +Y+++  +   + + +
Sbjct: 285 VGRNVH--MHSLRHTYVSYLIKNNINVVQVSKLIGHTNPNTTLTVYSHLFKQQEIESVNQ 342

Query: 313 IYDQTHPSITQKDKK 327
           I +    ++ QK KK
Sbjct: 343 INNLFRSNLGQKTKK 357


>gi|291561889|emb|CBL40692.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4]
          Length = 286

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 122/300 (40%), Gaps = 36/300 (12%)

Query: 13  ELLKERQNWLQNLEI---ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           EL K+++N  ++  +   ++ +S  T  +Y    RQ L      TE    ++  R L   
Sbjct: 3   ELPKDQENLAESFRLYLRKKNMSGNTGDAYGRAIRQLLSLYPVPTES--LLRKYRSL--- 57

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
                I+  R   I  R     +  +  FL +L++ +     ++   R   +S  +PR  
Sbjct: 58  ----LIANYRPATINQR-----IYAVNHFLLFLEEEQPELSPDLSGFR--LRSVKIPRDT 106

Query: 130 NEKQALTLVDNVLLH----TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
            +   +T  D   L       H   W       I+  L   G+R+SE + +  +++    
Sbjct: 107 FQDSIITNEDCETLQRNLKAEHHDFWY-----FIVRFLVTTGVRVSELVQIKAEHLA--C 159

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQ 244
             L +  KG KIR + +  S+ +    + D             LF G  G+P+   G+  
Sbjct: 160 GYLDLYSKGGKIRRIYIPDSLCQEAKAWCDRRGITSGF-----LFVGKNGRPVTTRGIHS 214

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +      RY   P +   H+ RH FA + L+   D+  +  +LGH  + TT+IY   +SK
Sbjct: 215 QLKHYAVRYGIDPDTMYPHSFRHRFAKNFLALSSDISLLADLLGHESIETTRIYLTRSSK 274


>gi|225419809|ref|ZP_03762112.1| hypothetical protein CLOSTASPAR_06150 [Clostridium asparagiforme
           DSM 15981]
 gi|225041550|gb|EEG51796.1| hypothetical protein CLOSTASPAR_06150 [Clostridium asparagiforme
           DSM 15981]
          Length = 361

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 63/283 (22%), Positives = 120/283 (42%), Gaps = 34/283 (12%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           RG +++T++SY  +   F     F+T +K     I  ++  +IR +++  +  +   D +
Sbjct: 90  RGCTEMTVESYRQEYTTF-----FHTLKK----AIPDITTGDIRGYLAHCKLVRHNKDVT 140

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           +      ++    +L +      + +L +++ K  + +    +++    + D  + H   
Sbjct: 141 INNKTRMLRGLFTWLTEEDYIDRNPMLRIKDNKVEHRVKEVFSDEHITIIKDAAVRHGP- 199

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
                  R+ AI+  L+  G+RISE ++L   +I        + GKG K R V       
Sbjct: 200 -------RSIAIVDFLHRTGVRISEMVALDRSDIDFQDRQCIVYGKGRKERPVYFSGDAA 252

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN---PGVFQRYIRQLR----RYLGLPLST 260
             + +Y      +   +    LF GIR KP N       +  +R++R    R  G+ ++ 
Sbjct: 253 VHLRDY-----LESRTDNNPALFVGIR-KPFNRLTDDAVRLILREIRDMDDRLAGIAIN- 305

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI-YTNVN 302
             H  R  F T LL     L  +  + GH  L+TT+  Y N N
Sbjct: 306 -PHKWRRQFVTELLEKDVPLTLVADLAGHKNLNTTKDNYGNYN 347


>gi|26246822|ref|NP_752862.1| integrase for prophage [Escherichia coli CFT073]
 gi|26107222|gb|AAN79405.1|AE016758_9 Integrase for prophage [Escherichia coli CFT073]
          Length = 343

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 28/186 (15%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--------TKWIDARNSAILYLLYGCGLRISEALS 175
           S P  L   +  T+ +  +   +HE         K  D   + ++ +    G R  EA++
Sbjct: 154 SYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICLSTGARWREAIN 213

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           LT   +   + T  ++ KG K R +P+   + + I+    L  F+               
Sbjct: 214 LTRSQVTKYRITF-VRTKGKKNRSIPISKELYEEIMA---LDGFNF-------------- 255

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  FQ      +  + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T
Sbjct: 256 --FTDCYFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMT 313

Query: 296 QIYTNV 301
             Y ++
Sbjct: 314 MRYAHL 319


>gi|297172228|gb|ADI23207.1| integrase [uncultured Gemmatimonadales bacterium HF0770_11C06]
          Length = 296

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 13/135 (9%)

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           LR+SE LSL   +I  D   +    K +K+R VP+   +R+A+L       +        
Sbjct: 107 LRVSEVLSLMRSDIQRDYLVV-THTKNNKVRKVPISSDLRRALLARTHQSGY-------- 157

Query: 228 PLFRGIR--GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
            +F   R  G P       +  R++   LG+  + + HTLRH+ A+ +L++G  +R +Q 
Sbjct: 158 -VFGETRYQGHPATQSTVTQAFRRVMARLGIA-NASHHTLRHTGASSMLADGISVRVVQE 215

Query: 286 ILGHFRLSTTQIYTN 300
           I G   L   + YT+
Sbjct: 216 IGGWRSLRMLERYTH 230


>gi|315658828|ref|ZP_07911695.1| prophage L54a integrase [Staphylococcus lugdunensis M23590]
 gi|315495952|gb|EFU84280.1| prophage L54a integrase [Staphylococcus lugdunensis M23590]
          Length = 406

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 30/171 (17%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGK---------GDKIRIVPLLPS------------ 205
           G+RI E L++  ++I  D  +L I G          G  ++      S            
Sbjct: 230 GMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHNESGGFGVKDTTKTESSYRTIGLSSRSC 289

Query: 206 --VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
             ++KAILE      ++   LN N    +F   +G P+    F + +R+  + +G+    
Sbjct: 290 EILKKAILENKKDSKWNDGYLNRNF---VFTNHKGNPMQTERFNKILRESAKDVGIEKEI 346

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           ++H LRHS  + L   G  L++I   +GH    TT  IY++V  +   D M
Sbjct: 347 SSHILRHSHISLLTQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMM 397


>gi|282922343|ref|ZP_06330034.1| integrase [Staphylococcus aureus A9765]
 gi|282593469|gb|EFB98464.1| integrase [Staphylococcus aureus A9765]
          Length = 404

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 84/208 (40%), Gaps = 32/208 (15%)

Query: 132 KQALTLVDNVLLHTSHETKWIDARN----SAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           K+ L   D ++ H  H T+    RN     A++      G+RI E L++   N+  +  T
Sbjct: 192 KELLECFDYLIKHKRHATR---KRNYEMVKALVEFQINNGMRIGELLAIKTDNVDVENKT 248

Query: 188 LRIQGKGDKI--------------------RIVPLLPS----VRKAILEYYDLCPFDLNL 223
           L I G  + +                    R + L       ++K +LE      ++   
Sbjct: 249 LEIDGTINWVTDVETGAFGVKETTKTSKSYRTIGLTTQSINLLKKLMLENKKENQWNDKF 308

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             +  +F    G P++       I++      +    T HTLRH+  + L   G +L++I
Sbjct: 309 TDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQLGINLKAI 368

Query: 284 QSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           Q  +GH    TT +IYT+V  +   D M
Sbjct: 369 QDRVGHSDYKTTLEIYTHVTDQMAKDMM 396


>gi|167851639|ref|ZP_02477147.1| integrase/recombinase [Burkholderia pseudomallei B7210]
          Length = 322

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 123/282 (43%), Gaps = 34/282 (12%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
           T ++Y      FL + A      IT +Q +   S+ E++       T+     ++K+ L+
Sbjct: 42  TRRAYARAASDFLTWCADAGVSSITAVQPLHVASWVELQ-------TRTHAASTVKQRLA 94

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLK---KSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            I+    +L   ++   ++  ++R+     ++ + P  L+  +A  L+D++ + T     
Sbjct: 95  AIRHLFDWLVTGQVVPVNSAASVRSPSHTVRTCATP-VLDPAEARQLLDSIDVSTP---- 149

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL--RIQGKGDKIRIVPLLPSVRK 208
            I  R+ A++ L+     RI  AL++   ++   Q  L  R++ KGDK   +P   ++  
Sbjct: 150 -IGLRDRALIALMVFSFARIGAALAMRVDDVYVQQRRLWIRLREKGDKAHAMPCHHTLEM 208

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYL---------GLPL 258
           A+  Y D     +  + +  LFR I RG      + +  + Q   Y+         G+  
Sbjct: 209 ALRAYLD--GTGIVFDPKGALFRTIARG---TGQLSETTLAQANAYVMVRRRAAAAGIAT 263

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              +H LR +  T  L NGG L +  +I  H    +TQ Y +
Sbjct: 264 KIGSHALRATGITTYLRNGGTLENAAAIANHVSTRSTQRYGD 305


>gi|331662209|ref|ZP_08363132.1| integrase for prophage [Escherichia coli TA143]
 gi|331060631|gb|EGI32595.1| integrase for prophage [Escherichia coli TA143]
          Length = 351

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 30/187 (16%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWID-----ARNSAILYLLY----GCGLRISEAL 174
           +LP  L + +  T+ +  +   +HE + I+      R + IL L+       G R  EA+
Sbjct: 154 TLPNPLEKMRKFTIAEKEMAWLTHE-QIIELLSDCKRQNPILALVVKICLSTGARWREAI 212

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +LT   +   + T  ++ KG K R +P+   + + I+    L  F+   +          
Sbjct: 213 NLTRSQVTKYRITF-VRTKGKKNRSIPISKELYEEIMA---LDGFNFFTDC--------- 259

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
                   FQ      +  + LP     H LRH+FA H + +GG++ ++Q ILGH  +  
Sbjct: 260 -------YFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKM 312

Query: 295 TQIYTNV 301
           T  Y ++
Sbjct: 313 TMRYAHL 319


>gi|239623220|ref|ZP_04666251.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522186|gb|EEQ62052.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 284

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 15/179 (8%)

Query: 127 RALNEKQALTLVDNVLLHTSHETK----WIDARNSA--ILYLLYGCGLRISEALSLTPQN 180
           RA+  +Q   L D V+    +E      W D + +   I+  +   G+R+SE +    ++
Sbjct: 96  RAIRIQQKCYL-DRVISQADYEYLKRRLWEDGQYTFYFIIRFITATGVRVSELVMFEVRD 154

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN- 239
           +   Q    I  KG+K+R + +  S++K  + +      +       PLF    G  ++ 
Sbjct: 155 VY--QGYKDIYSKGNKMRRIYIPSSLQKNAIHW-----LEAEGRHSGPLFLSHLGCCISI 207

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            G+  +      RY   P     H+ RH FA + + NGGD+  + ++LGH  + +T+IY
Sbjct: 208 SGIRAQLKTYACRYNLDPRVVYPHSFRHRFAKNFIENGGDIAFLSNLLGHDSIESTRIY 266


>gi|217033129|ref|ZP_03438591.1| hypothetical protein HPB128_190g7 [Helicobacter pylori B128]
 gi|298736052|ref|YP_003728577.1| XerCD family integrase/recombinase [Helicobacter pylori B8]
 gi|216945151|gb|EEC23845.1| hypothetical protein HPB128_190g7 [Helicobacter pylori B128]
 gi|298355241|emb|CBI66113.1| integrase/recombinase (XerCD family) [Helicobacter pylori B8]
          Length = 357

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 121/267 (45%), Gaps = 27/267 (10%)

Query: 48  IFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKR 105
           +FL F Y + +I ++++  L+  ++  F+    T+     S+ + +  ++ F  YL +KR
Sbjct: 77  LFLFFEYFDNRIKLKSLHNLAEEQVIDFLFGL-TKNRKPSSMAKYVMYLRQFFDYLDRKR 135

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
             + E  + N+   KK   LP+ LN+      V  +L +  H     + RN  IL L+  
Sbjct: 136 NYSFEFELKNLSFAKKETHLPKHLNKNDFKAFVQALLKY--HPKTSFEKRNQCILLLIVL 193

Query: 166 CGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD--L 221
            GLR  EAL L  +NI   ++   L I+GK +K R       + K  L+     P +  L
Sbjct: 194 GGLRKFEALDLELKNIALENNHYRLLIKGKNNKERY----AYIEKEFLQ----VPLNAWL 245

Query: 222 NLNIQLPLFRG--IRGKPLNPGV-----FQRYIRQLRRYLGLPLSTTA---HTLRHSFAT 271
           +   +L  F+G  +  K  N         + +I ++ +   + + +     H  RHSFAT
Sbjct: 246 SDTKRLKSFKGRFVFKKAKNNTTQKTCSLKGFIAKIFKLSNIDVKSYGLGLHLFRHSFAT 305

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIY 298
            +     DL      LGH  L +T+IY
Sbjct: 306 FIYDATQDLVLTSRALGHSSLLSTKIY 332


>gi|49482599|ref|YP_039823.1| integrase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|221142677|ref|ZP_03567170.1| putative integrase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|282902955|ref|ZP_06310848.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus C160]
 gi|282907352|ref|ZP_06315200.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|295426904|ref|ZP_06819543.1| integrase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297588884|ref|ZP_06947525.1| prophage L54a [Staphylococcus aureus subsp. aureus MN8]
 gi|49240728|emb|CAG39389.1| putative integrase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282330251|gb|EFB59772.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282597414|gb|EFC02373.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus C160]
 gi|295129356|gb|EFG58983.1| integrase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297577395|gb|EFH96108.1| prophage L54a [Staphylococcus aureus subsp. aureus MN8]
 gi|302750241|gb|ADL64418.1| pathogenicity island protein, integrase [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|315194829|gb|EFU25218.1| putative integrase [Staphylococcus aureus subsp. aureus CGS00]
          Length = 404

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 84/208 (40%), Gaps = 32/208 (15%)

Query: 132 KQALTLVDNVLLHTSHETKWIDARN----SAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           K+ L   D ++ H  H T+    RN     A++      G+RI E L++   N+  +  T
Sbjct: 192 KELLECFDYLIKHKRHATR---KRNYEMVKALVEFQINNGMRIGELLAIKTDNVDVENKT 248

Query: 188 LRIQGKGDKI--------------------RIVPLLPS----VRKAILEYYDLCPFDLNL 223
           L I G  + +                    R + L       ++K +LE      ++   
Sbjct: 249 LEIDGTINWVTDVVTGAFGVKETTKTSKSYRTIGLTAQSINLLKKLMLENKKENQWNDKF 308

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             +  +F    G P++       I++      +    T HTLRH+  + L   G +L++I
Sbjct: 309 IDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQLGINLKAI 368

Query: 284 QSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           Q  +GH    TT +IYT+V  K   D M
Sbjct: 369 QERVGHSDYKTTLEIYTHVTDKMAKDMM 396


>gi|331003766|ref|ZP_08327260.1| hypothetical protein HMPREF0491_02122 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412149|gb|EGG91544.1| hypothetical protein HMPREF0491_02122 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 396

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 26/164 (15%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRI----QGKGDK------------IRIVPLL 203
           L +L G GLRISE   LT  +I  +  T+ +    Q  G K            IR +P+ 
Sbjct: 216 LIILLGTGLRISEFCGLTDSDIDFENRTINVDHQLQYSGKKSYRIETPKTENGIRKIPMS 275

Query: 204 PSVRKA---ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL------RRYL 254
             V +A   +++      F ++      LF    G P N   +    R+L      +   
Sbjct: 276 DRVLEALQRVMQNRRKSDFTVDGYTGF-LFLTRNGTPQNYINYDIMFRKLVEKYNKKHEE 334

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            LP+ TT HTLRH+F T++ + G + +++Q ++GH  ++ T  Y
Sbjct: 335 VLPVVTTPHTLRHTFCTNMANAGMNPKALQYLIGHANITMTLNY 378


>gi|253581963|ref|ZP_04859187.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
 gi|251836312|gb|EES64849.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
          Length = 339

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 124/279 (44%), Gaps = 43/279 (15%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           + LSKL+  +YE +   F         + +  + I +L    ++ F++     +   R++
Sbjct: 84  KKLSKLSQSNYESNYTHF---------KPLKDRKIAELKTIHLQEFMNNLELSESSKRNI 134

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           KR L+ +    KY  K  I  E +      L K   +     E++  T  +   L    E
Sbjct: 135 KRMLNQL---FKYALKYDII-EKDYTQFIELGKVEKIL----ERKIFTDEEISKLWKYKE 186

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR--IQGKGDKIRIVPL---- 202
            +W+D     IL ++Y  G+R+ E L++  Q+I  +  T+R  I+    K R++P+    
Sbjct: 187 LEWVDT----ILIMIY-TGMRVGELLTIKNQDIDLENRTIRGGIKTDAGKNRLIPINMKI 241

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           LP ++        + P     N  L L R  + K L+   +  Y ++L +   L +  T 
Sbjct: 242 LPFIKTR------MTP----SNEYLILSR--KEKNLSYSSYITYFKKLMK--KLDMEHTI 287

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTN 300
           H  RH+FA+ L +   +  SI  I+GH     T+ IYT+
Sbjct: 288 HDCRHTFASLLSNADANKVSIAKIIGHSNYDMTEKIYTH 326


>gi|145594516|ref|YP_001158813.1| phage integrase family protein [Salinispora tropica CNB-440]
 gi|145303853|gb|ABP54435.1| phage integrase family protein [Salinispora tropica CNB-440]
          Length = 132

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 31/53 (58%)

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           R  LGL      H+LR S+ THL+  G D R +Q  +GH   STT IYT V+S
Sbjct: 53  RDALGLDTGLDFHSLRRSYVTHLIEAGHDARFVQEQVGHEHASTTSIYTCVSS 105


>gi|90962728|ref|YP_536643.1| DNA integration/recombination/inversion protein [Lactobacillus
           salivarius UCC118]
 gi|90821922|gb|ABE00560.1| DNA integration/recombination/inversion protein [Lactobacillus
           salivarius UCC118]
          Length = 308

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 16/163 (9%)

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-KIRIVP 201
           L+ S E  W        +YL+   GLR +EAL+LTP +   +   + I    + K +   
Sbjct: 128 LNLSSEVNW-----DWFIYLISKTGLRFAEALALTPADFDYENQQININKSWNYKFKDYG 182

Query: 202 LLP-----SVRKAILEYYDLCPFDLNL---NIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
             P     S RK  ++   L  F   +   +   P+F     K  N  V  R +  L R+
Sbjct: 183 FQPTKNKSSNRKIFVDNSTLKAFKKLIKEKDPDQPIFVNQDQKIFNSTVNSR-LATLYRH 241

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
             +P + + H LRH+ A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 242 ANIP-TISIHGLRHTHASLLLFQGVSVLSVSRRLGHANITTTQ 283


>gi|326776078|ref|ZP_08235343.1| integrase family protein [Streptomyces cf. griseus XylebKG-1]
 gi|326656411|gb|EGE41257.1| integrase family protein [Streptomyces cf. griseus XylebKG-1]
          Length = 328

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 107/263 (40%), Gaps = 37/263 (14%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +R ++  +++++I     +++G  ++KR+ + + S ++      +   S   N+   + +
Sbjct: 58  MRAVTRMDVQSWIRGLVEKRVGASAIKRAHNLLSSIMRAAVDDDVIAVSPCRNIDLPQIA 117

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
              P+     QA ++VD            + A    +  L +  GLR  E  SL    I 
Sbjct: 118 IKPPQWFTLDQAQSIVDE-----------LPAPWRTMCLLGFYTGLRWGELASLHRHRID 166

Query: 183 DDQSTLRIQGKGDKIRI------------VPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
             +S L +     K  I            VPL P V  A+  +  L   D +  +   + 
Sbjct: 167 QRRSCLFVVEVNTKSSIKEYPKSSRSRREVPLPPHVLDALERHIHL--LDHDALVFTTIA 224

Query: 231 RGIRGKPLNPGVFQR-----------YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
           +G  G+ L+ G ++R           Y       L +P     H++RH+ A+ L+  G  
Sbjct: 225 KGRAGRRLDDGNWRRQTWWPAIENAHYFDADGEQLPVP-HYPPHSMRHTCASWLVQKGVS 283

Query: 280 LRSIQSILGHFRLSTTQIYTNVN 302
           L  +Q +LGH    TTQ Y ++ 
Sbjct: 284 LYEVQHLLGHESFQTTQRYAHLQ 306


>gi|256026508|ref|ZP_05440342.1| putative integrase [Fusobacterium sp. D11]
 gi|289764520|ref|ZP_06523898.1| conserved hypothetical protein [Fusobacterium sp. D11]
 gi|289716075|gb|EFD80087.1| conserved hypothetical protein [Fusobacterium sp. D11]
          Length = 329

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 108/249 (43%), Gaps = 21/249 (8%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK----SFLKYLKKRKITTESNILNM 116
           ++I+ ++  ++R ++     QK G+ S K ++  I+    SF  +L++     +S +  +
Sbjct: 88  KSIKHITTNDLREYLDN--YQKEGNAS-KITIDNIRRIFSSFFAWLEEEDYILKSPVRRI 144

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             +K    +    +++    + DN              R+ AI+ +L   G+R+ E + L
Sbjct: 145 HKVKTGTLVKETYSDEAMEIMRDNCR----------SLRDLAIIDILASTGMRVGELVKL 194

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
             ++I  +     + GKGDK R V    +  K  L  Y     D N  + + L +    K
Sbjct: 195 NIEDIDFEGRECVVFGKGDKERKV-YFDARTKIHLHNYLKTRDDDNSALFVSLLKPY--K 251

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L     +  +RQL R L +      H  R + AT  +  G  +  +Q +LGH ++ TT 
Sbjct: 252 RLQISGVEIMLRQLGRKLNIT-KVHPHKFRRTLATKAIDKGMPIEQVQQLLGHQKIDTTL 310

Query: 297 IYTNVNSKN 305
            Y  V+  N
Sbjct: 311 QYAMVSQNN 319


>gi|225352308|ref|ZP_03743331.1| hypothetical protein BIFPSEUDO_03924 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157555|gb|EEG70894.1| hypothetical protein BIFPSEUDO_03924 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 447

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 73/176 (41%), Gaps = 27/176 (15%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-----QGKGD-------------K 196
           R S  L LL G GLRI E   L  ++I  D   L +     QG  D              
Sbjct: 220 RLSIHLALLVG-GLRIGEVCGLQLRDIDLDHRLLYVRHSVTQGPDDLGEYRLDETKTPES 278

Query: 197 IRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRY 253
            R+VP+   V + I E+ D  CP   + +    LF  +R   + LNP   QR  R  R+ 
Sbjct: 279 HRVVPIPAPVCRLIREHIDRFCP---DRDPDTMLFHAVRHPERVLNPTTIQRQFRTARKR 335

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGD 308
           +      T H+LR + AT  +  GG LR     LGH  +    + Y  V  ++  D
Sbjct: 336 INRE-DVTFHSLRATHATMFMIQGGTLRETMDELGHVDVDVAVRCYQRVVPRHRRD 390


>gi|126466056|ref|YP_001041165.1| phage integrase family protein [Staphylothermus marinus F1]
 gi|126014879|gb|ABN70257.1| phage integrase family protein [Staphylothermus marinus F1]
          Length = 333

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 70/155 (45%), Gaps = 12/155 (7%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAIL 211
           D  +  IL +L   GLR  E L +   +I  +  T+ I   K DK R V +     + I 
Sbjct: 141 DPLDKLILSILLDTGLRSKELLGIRVSDIDFENRTITITSTKYDKERKVLVTSRTMELIR 200

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFA 270
            +       + LN    L +  R  PL      + I++L R   +P      H LRH+FA
Sbjct: 201 SW-------IKLN---NLEKEDRLIPLTYSGLYKRIKRLGRRASIPAWKIRPHILRHTFA 250

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           T  L  G  L  +Q +LGH  + TTQIY +V  ++
Sbjct: 251 TQALRKGLSLPYLQRLLGHSDIKTTQIYLHVTIED 285


>gi|77362462|ref|YP_342036.1| putative site-specific tyrosine integrase/recombinase; may be used
           for the termination of replication of chromosome 2
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76877373|emb|CAI89590.1| putative site-specific tyrosine integrase/recombinase; may be used
           for the termination of replication of chromosome 2
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 403

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 118/287 (41%), Gaps = 59/287 (20%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           Q IR+L+ T  R FI K         + +++LS + + L    K  I  E    N   + 
Sbjct: 124 QGIRRLN-TNWRPFIQKESI------ASQQTLSAMFTALNVFYKFAILEEKTFANFVPVV 176

Query: 121 KSNS----------LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
           K NS          +P  L++ Q    V  V      +   ++ RN   L  L G  LRI
Sbjct: 177 KKNSPYLVVQSQIQIPDTLSDIQ-WEYVFGVTRDLCEQQPDLE-RNLFTLACLKGLYLRI 234

Query: 171 SEALSLTPQ--NIM-------DDQSTLRIQGKGDKIRIVPLLPSVRKAILEY--YDLCPF 219
           SE LS  PQ   +M       D    LRI GKG+K+R V L     + +  Y  Y   P 
Sbjct: 235 SE-LSERPQWSPVMSHFWQDNDGFWFLRIMGKGNKLRDVTLSDDFVEYLKRYRLYRGLPA 293

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL--------------------S 259
              ++   PL   IRG+    G+    +RQ+RR +                        +
Sbjct: 294 LPRVDESEPLVHKIRGQG---GM---TVRQIRRLVQQSFDLAQQSLLDDGFKDDSEQLEA 347

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKN 305
            TAH LRH+ ATH  +    L+ +   LGH +++TT QIY   N K 
Sbjct: 348 ATAHWLRHTGATH-DAQTRPLKHLSEDLGHAKIATTDQIYIQTNIKE 393


>gi|302879148|ref|YP_003847712.1| integrase family protein [Gallionella capsiferriformans ES-2]
 gi|302581937|gb|ADL55948.1| integrase family protein [Gallionella capsiferriformans ES-2]
          Length = 217

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 15/154 (9%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----QGKGDKIRI-VPLLPSVRKA 209
           R++ ++ L Y  GLR+SE +SL    +   Q  + I    QG      I  P L ++R+ 
Sbjct: 65  RDATLIMLTYRHGLRVSELVSLRWDQVDLRQGLMHINRLKQGNPSVHPIRGPELRALRR- 123

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +   Y + P+         LF   R  PL     ++ + +      LP +   H LRH+ 
Sbjct: 124 LQRDYPVLPY---------LFSSERKAPLTDDAIRKIVGRAGVEARLPFTVHPHMLRHAC 174

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              L   G D R+IQ  LGH  +  T  YT ++S
Sbjct: 175 GYKLAQAGQDTRAIQHYLGHRNIQHTVRYTQLSS 208


>gi|169350753|ref|ZP_02867691.1| hypothetical protein CLOSPI_01526 [Clostridium spiroforme DSM 1552]
 gi|169292616|gb|EDS74749.1| hypothetical protein CLOSPI_01526 [Clostridium spiroforme DSM 1552]
          Length = 318

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 18/178 (10%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + LN+ +  TL+ N+ L  +    W        + L+   G+R SEAL++TP++    + 
Sbjct: 126 KFLNQFELHTLLANLDLKETVNWDWF-------ILLVAKTGMRFSEALAITPEDFDFSRQ 178

Query: 187 TLRIQGKGDKIRIVPLLP-----SVRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPL 238
            L I    D       LP     SVRK  +++  +  F      L    P+F G   K  
Sbjct: 179 MLSISKTWDYKGEGGFLPTKNKSSVRKIQIDWQIVVKFSELIKTLPKDKPIFVG-ENKIY 237

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           N  V     R  +   G+ +  + H LRH+ A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 238 NSTVNDVLTRHCKE-CGISI-ISIHGLRHTHASLLLFAGVSIASVARRLGHASMTTTQ 293


>gi|168178970|ref|ZP_02613634.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum NCTC 2916]
 gi|182670087|gb|EDT82063.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum NCTC 2916]
          Length = 199

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 87/191 (45%), Gaps = 12/191 (6%)

Query: 127 RALNEKQALTLVDNVLL-HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           + L +++A+ L + ++    SH       R+ A+  + Y CGLR SE   +   +   D+
Sbjct: 10  KYLTQQEAIRLFNAIIFSDNSHA-----VRDLALFRVAYRCGLRASEISLIKLDDYNADK 64

Query: 186 STLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
             L  +  KG     + L  + +KA+  Y  +  + +  N +  L +  +  P++     
Sbjct: 65  GDLYCKRLKGSNNNTIRLDATTKKALDTY--IRDYKIFCNSE-TLSKSQKNNPISRQTLD 121

Query: 245 RYIRQLRRYLGLPLSTTAH--TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             +++  +   +   +  H  TL+H+ A HL  +  D++ +Q  LGH  +S T+IY    
Sbjct: 122 YLMKKYCKIANISDKSKHHFHTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEIYFQFT 181

Query: 303 SKNGGDWMMEI 313
           +K      M++
Sbjct: 182 TKQQEKMYMKL 192


>gi|325846637|ref|ZP_08169552.1| phage integrase, N-terminal SAM domain protein [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481395|gb|EGC84436.1| phage integrase, N-terminal SAM domain protein [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 258

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 94/207 (45%), Gaps = 29/207 (14%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF--------------YTEEKITIQTIR 64
            ++L  L+  R LS+ T+  Y  D   F+ +                   +E I I  I 
Sbjct: 10  DDYLSYLKSIRALSEKTISEYRYDLINFIYYQILRKVYFNDKENLNKDIEDENININKIF 69

Query: 65  QLSYT------EIRAFISKRRTQKIGDRSLKRS--LSGIKSFLKYLKKRKITTESNILN- 115
             S+       ++ ++IS    + + D +  RS  +S ++SF KYL +     ++NI   
Sbjct: 70  NKSFISDINIQDMYSYISYLDNE-LNDNASTRSRKISALRSFYKYLHQEIEIIDNNITEK 128

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +RN K     P  L   +   L+D +      + +++  R+ AI++     G+R+SE +S
Sbjct: 129 LRNPKIQKRQPVYLTLSETEHLLDTI---NEEKNEFLRNRDMAIVFTFLTTGMRLSELVS 185

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPL 202
           +  ++I DD  T  I GKG+K R + L
Sbjct: 186 VDLKDIKDDHFT--IIGKGNKERTIYL 210


>gi|284048509|ref|YP_003398848.1| integrase family protein [Acidaminococcus fermentans DSM 20731]
 gi|283952730|gb|ADB47533.1| integrase family protein [Acidaminococcus fermentans DSM 20731]
          Length = 309

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 83/178 (46%), Gaps = 18/178 (10%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + LN+ Q  TL+ ++ L       W        + L+   G+R SEAL+LTP +      
Sbjct: 116 KYLNQFQLHTLLKHLDLGERVNWDWF-------ILLVAKTGMRFSEALALTPDDFDFAHQ 168

Query: 187 TLRIQGKGDKIRIVPLLP-----SVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPL 238
           T+ I    +       LP     S+RK  +++  +  F +   +L  ++P F   +GK  
Sbjct: 169 TVCINKTWNYKGNGGFLPTKNRSSIRKIQIDWKTVMQFAVLTDSLPKEVPFFIH-KGKLY 227

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           N  V     R  +R L +P+  + H LRH+ A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 228 NSTVNNILERHCKR-LEIPI-ISIHGLRHTHASLLLFAGVSIASVARRLGHASMTTTQ 283


>gi|198275454|ref|ZP_03207985.1| hypothetical protein BACPLE_01619 [Bacteroides plebeius DSM 17135]
 gi|255008845|ref|ZP_05280971.1| site-specific recombinase [Bacteroides fragilis 3_1_12]
 gi|198271083|gb|EDY95353.1| hypothetical protein BACPLE_01619 [Bacteroides plebeius DSM 17135]
          Length = 406

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 9/109 (8%)

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K D +  +PLL  + + ILE Y   P      + LP+       P N  +   Y++++  
Sbjct: 289 KTDNMCDIPLL-DIPRLILEKYQSNPICNEKGLLLPV-------PSNQRM-NSYLKEIAD 339

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             G+  + + H  RH+FA+  ++N   L SI  +LGH  + TT+IY  +
Sbjct: 340 VCGIQKNLSTHIARHTFASLAIANKVSLESIAKMLGHTDIRTTRIYAKI 388


>gi|312970927|ref|ZP_07785106.1| integrase [Escherichia coli 1827-70]
 gi|310336688|gb|EFQ01855.1| integrase [Escherichia coli 1827-70]
          Length = 349

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 28/186 (15%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--------TKWIDARNSAILYLLYGCGLRISEALS 175
           S P  L   +  T+ +  +   +HE         K  D   + ++ +    G R  EA++
Sbjct: 154 SYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICLSTGARWREAIN 213

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           LT   +   + T  ++ KG K R +P+   + + I+    L  F+               
Sbjct: 214 LTRSQVTKYRITF-VRTKGKKNRSIPISKELYEEIMA---LDGFNF-------------- 255

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  FQ      +  + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T
Sbjct: 256 --FTDCYFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMT 313

Query: 296 QIYTNV 301
             Y ++
Sbjct: 314 MRYAHL 319


>gi|301062646|ref|ZP_07203274.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300443257|gb|EFK07394.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 359

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 27/39 (69%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H LRH+FAT+ +    D+R +Q ILGH  + TTQ YT+V
Sbjct: 294 HDLRHTFATYAMVKSKDIRGVQEILGHKNIQTTQKYTHV 332


>gi|291514241|emb|CBK63451.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 409

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 82/187 (43%), Gaps = 26/187 (13%)

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMD 183
           P+AL+ +    + D V+    H    I AR+      L+ C  G   ++A+S+T  N+  
Sbjct: 223 PKALSRESVEKIRDLVI--PEHRASHILARD----LFLFACYTGTAYADAVSVTRDNLFT 276

Query: 184 DQST---LRIQGKGDKIR-IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           D++    L+ + K +++R  V LLP     I +Y D     L   +  P  R        
Sbjct: 277 DENGGLWLKYRRKKNELRACVKLLPEALALIEKYRDDDRQTLFPMLHYPNMR-------- 328

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIY 298
                R ++ L     +    T H  RHSFA+ + L  G  + +I  +LGH  L TTQ+Y
Sbjct: 329 -----RLMKCLAILADIKEDLTYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQVY 383

Query: 299 TNVNSKN 305
             V  K 
Sbjct: 384 AKVTPKK 390


>gi|253999172|ref|YP_003051235.1| integrase family protein [Methylovorus sp. SIP3-4]
 gi|253985851|gb|ACT50708.1| integrase family protein [Methylovorus sp. SIP3-4]
          Length = 338

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 68/317 (21%), Positives = 128/317 (40%), Gaps = 38/317 (11%)

Query: 3   GNNLPEIVSFELLKER---QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
              L + +S EL + R   +N   N+ ++    K+  Q +E     F +   +   +K  
Sbjct: 33  AQKLHDKISTELWEGRWIDRNQSGNMTLDAAFDKVMAQRWEKQRSWFSVIHNYNRFKKYL 92

Query: 60  IQTIRQLSYTEIRAF--ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
             + +    T  R +  I + R  +  D ++ RS++ I + LK  +         I  + 
Sbjct: 93  KGSTKLSEITRARLWEVIGEMREDEYTDGTINRSMAVISTILKTARD-DWEVIVKIPKVP 151

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
            LK      R L + + L  ++       H+   +D     ++ +L   G R+SE L L 
Sbjct: 152 LLKVGRGRMRWLKDDEELPFLEWFRKQGDHDM--VD-----LIEVLLETGCRVSEILRLK 204

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-----NIQLPLFRG 232
             ++  ++  L              L   +    EY  L  + L +      I +P F G
Sbjct: 205 DTDVHINERRL-------------YLGITKSGEEEYQPLSEYALQIFLRRYKIGVPPFEG 251

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLP--LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
           +       G   R+ +  +R+LG         HT+RH+ A+ L+ +G DL+ +Q  + H 
Sbjct: 252 VS----RWGALSRF-QTAKRHLGYADDHELVLHTMRHTCASRLVQSGVDLKRVQEYMRHK 306

Query: 291 RLSTTQIYTNVNSKNGG 307
            ++TT IY  ++S+   
Sbjct: 307 DINTTLIYAKLSSEENA 323


>gi|94499639|ref|ZP_01306176.1| Integrase [Oceanobacter sp. RED65]
 gi|94428393|gb|EAT13366.1| Integrase [Oceanobacter sp. RED65]
          Length = 331

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 27/151 (17%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD 215
           S I  L    G+R +EA  L  +N++  Q+ +R+   K  K R + + P +   I+E   
Sbjct: 183 SLITRLCLSTGMRWNEANQLRRENLIPSQNKIRLNITKNSKARTLLITPQLMNEIVE--- 239

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG-----LPLSTTAHTLRHSFA 270
                             +G+P      Q +    +  L      LP     H LRH+FA
Sbjct: 240 ------------------QGEPFGRLFPQDHYNAFKLALDKTEIKLPKGQRTHVLRHTFA 281

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  + NGG L  +Q ILGH  +  T  Y ++
Sbjct: 282 SWYMINGGRLEVLQKILGHGTILMTMKYAHL 312


>gi|17227375|ref|NP_478426.1| integrase/recombinase [Nostoc sp. PCC 7120]
 gi|17134774|dbj|BAB77331.1| integrase/recombinase [Nostoc sp. PCC 7120]
          Length = 322

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 7/164 (4%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--QGKGDKIRI 199
           +L T   T     R+ A+L LL+   LR  E   L   +     S L I  +G+G +   
Sbjct: 144 ILLTCDRTTAKGVRDYALLRLLWDNALRRGEIAKLKMGDFDRQNSKLLILGKGRGSQREA 203

Query: 200 VPLLPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           + L P  R AI   L +  L      L + L       G PL+     + +R   +  G+
Sbjct: 204 IDLTPKTRDAICYWLAFRGLASTKDALFVALD--PNTPGHPLSDTGLAKMVRTRAKKAGI 261

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               + H +RHS  T  L  G  +R +Q +  H +L T  IY +
Sbjct: 262 TKPLSPHRIRHSSITAALDAGQSVREVQKLSRHTKLETLMIYDD 305


>gi|324112716|gb|EGC06692.1| phage integrase [Escherichia fergusonii B253]
          Length = 343

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 28/186 (15%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--------TKWIDARNSAILYLLYGCGLRISEALS 175
           S P  L   +  T+ +  +   +HE         K  D   + ++ +    G R  EA++
Sbjct: 154 SYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICLSTGARWREAVN 213

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           LT   +   + T  ++ KG K R +P+   + + I+    L  F+               
Sbjct: 214 LTRSQVTKYRITF-VRTKGKKNRSIPISKELYEEIMA---LDGFNF-------------- 255

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  FQ      +  + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T
Sbjct: 256 --FTDCYFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMT 313

Query: 296 QIYTNV 301
             Y ++
Sbjct: 314 MRYAHL 319


>gi|331656870|ref|ZP_08357832.1| integrase for prophage [Escherichia coli TA206]
 gi|331055118|gb|EGI27127.1| integrase for prophage [Escherichia coli TA206]
          Length = 350

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 28/186 (15%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--------TKWIDARNSAILYLLYGCGLRISEALS 175
           S P  L   +  T+ +  +   +HE         K  D   + ++ +    G R  EA++
Sbjct: 154 SYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICLSTGARWREAIN 213

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           LT   +   + T  ++ KG K R +P+   + + I+    L  F+               
Sbjct: 214 LTRSQVTKYRITF-VRTKGKKNRSIPISKELYEEIMA---LDGFNF-------------- 255

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  FQ      +  + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T
Sbjct: 256 --FKDCYFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMT 313

Query: 296 QIYTNV 301
             Y ++
Sbjct: 314 MRYAHL 319


>gi|303235824|ref|ZP_07322428.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483966|gb|EFL46957.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 422

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 73/162 (45%), Gaps = 26/162 (16%)

Query: 167 GLRISEALSLTPQNI---MDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY--DLCPFD 220
           GL   +   L P++I    D    +RI+  K D   I+PLLP + K IL  Y  D    D
Sbjct: 257 GLARVDMQRLKPKHITHNADGTEEIRIKRQKTDVEAIIPLLP-IAKQILSLYIKDKKADD 315

Query: 221 L---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSN 276
           L   NL I+   F  +     N G   R  + L          T H  RH+F+T + LSN
Sbjct: 316 LIFPNLTIRKASFACV-----NIGQICRIEKGL----------TFHMARHTFSTTICLSN 360

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           G  + ++  +LGH  + TTQIY  +      + M  + D+ H
Sbjct: 361 GISMETLSKMLGHSNIGTTQIYGKITDHKIQEDMTALTDREH 402


>gi|66395166|ref|YP_239446.1| ORF002 [Staphylococcus phage PT1028]
 gi|62635520|gb|AAX90631.1| ORF002 [Staphylococcus phage PT1028]
          Length = 404

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 84/208 (40%), Gaps = 32/208 (15%)

Query: 132 KQALTLVDNVLLHTSHETKWIDARN----SAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           K+ L   D ++ H  H T+    RN     A++      G+RI E L++   N+  +  T
Sbjct: 192 KELLECFDYLIKHKRHATR---KRNYEMVKALVEFQINNGMRIGELLAIKTDNVDVENKT 248

Query: 188 LRIQGKGDKI--------------------RIVPLLPS----VRKAILEYYDLCPFDLNL 223
           L I G  + +                    R + L       ++K +LE      ++   
Sbjct: 249 LEIDGTINWVTDVETGAFGVKETTKTSKSYRTIGLTTQSINLLKKLMLENKKENQWNDKF 308

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             +  +F    G P++       I++      +    T HTLRH+  + L   G +L++I
Sbjct: 309 TDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQLGINLKAI 368

Query: 284 QSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           Q  +GH    TT +IYT+V  +   D M
Sbjct: 369 QDRVGHSDYKTTLEIYTHVTDQMAKDMM 396


>gi|193071780|ref|ZP_03052675.1| Int2 [Escherichia coli E110019]
 gi|192954916|gb|EDV85424.1| Int2 [Escherichia coli E110019]
          Length = 246

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +  T HT RHS+A HL  +G   R +QS+LGH    +T+IYT V S
Sbjct: 170 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFS 215


>gi|241589939|ref|YP_002979964.1| integrase family protein [Ralstonia pickettii 12D]
 gi|240868651|gb|ACS66310.1| integrase family protein [Ralstonia pickettii 12D]
          Length = 733

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 72/201 (35%), Gaps = 67/201 (33%)

Query: 159 ILYLLYGCGLRISEALSLTPQNI--------MDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
           IL   YG GLR +E       +I        +   + L++ GKG K R VPL P + +A+
Sbjct: 525 ILIFAYGTGLRRAELAGARTGHITRTYAGPELGTITVLQVIGKGGKERFVPLSPRLLQAL 584

Query: 211 LEY--YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-------- 260
             Y  Y   P D              G PL P +  +  R+L+R   +P           
Sbjct: 585 SAYLVYRGLPADPQACPA--------GTPLIPALQDK--RELQRVRAVPAGADAVVAVGS 634

Query: 261 ---------------------------------------TAHTLRHSFATHLLSNGGDLR 281
                                                  T H LRH+F +H ++ G  L 
Sbjct: 635 AEKAIKLPKLYNAVKRFFDNAAAAAHSEAPEFADAFSRATTHWLRHTFGSHAVAGGMALE 694

Query: 282 SIQSILGHFRLSTTQIYTNVN 302
           + +  LGH  +STT IY+  +
Sbjct: 695 TARQFLGHASISTTGIYSVAD 715


>gi|134045674|ref|YP_001097160.1| phage integrase family protein [Methanococcus maripaludis C5]
 gi|132663299|gb|ABO34945.1| phage integrase family protein [Methanococcus maripaludis C5]
          Length = 333

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 117/304 (38%), Gaps = 24/304 (7%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+E   +L     ER   K+   + + D  +  IFL+F  +     +T+    +     +
Sbjct: 25  LEEHNPYLIKFIEEREFDKIKESTIKEDVLRLRIFLSFCDDIGKIPETMDYHEFKRFFVY 84

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + K+R      ++L R  + +K F +  K       +N    R      S  R+ ++   
Sbjct: 85  LEKKRG--CTHQTLVRYYNLLKVFYRLFKFTAFNEFNNECIERKTFSKKSKTRSYDDVNN 142

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGK 193
             ++D VL            R+  ++ +L+  G R SE + +   +       +R+   K
Sbjct: 143 -EIMDKVLDEILDGNSATKNRDGLMMLVLWETGCRRSEVIRIKYNDFDFKTGQIRLTDTK 201

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQRYIRQ 249
             + R V +       I EY          N      +G  GK + PG    VF+R I  
Sbjct: 202 NGEDRYVVVSKKTTNLIREYSSENILKGPENFIFQSEKGKLGKQVKPGHLSEVFRRAIDN 261

Query: 250 L---------RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           L         +RY+        H+LRH  A  LL  G  +  ++ ILGH  + TT IY +
Sbjct: 262 LISKGEIEAGKRYV-------LHSLRHGRAVALLDEGTSVEIVKEILGHSDVKTTMIYAH 314

Query: 301 VNSK 304
              +
Sbjct: 315 AKER 318


>gi|14020982|dbj|BAB47606.1| transposase B of Transposon Tn554 [Staphylococcus aureus]
 gi|169403108|emb|CAP17709.1| transposase B of Tn554 [Staphylococcus pseudintermedius]
 gi|302749959|gb|ADL64136.1| transposition regulatory protein TnpB_1 [Staphylococcus aureus
           subsp. aureus str. JKD6008]
          Length = 630

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 115/282 (40%), Gaps = 32/282 (11%)

Query: 38  SYECDTRQFLI-FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS--- 93
           SY  D  Q L  F  F   +   +Q + QL+  EI A++S+     I   ++   +S   
Sbjct: 236 SYVSDIAQKLKEFFNFLDIKFKHVQRVHQLTRVEIEAYLSELNMMGIKPSTITGRISILE 295

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
           G+ S L  L+   + ++  I      K   + PR ++E     +++ +  H     ++I 
Sbjct: 296 GLFSTLHRLEWDDVPSKLLIYPEDYPKIPRAKPRFIDE----FVLEQLNSHLDKLPEYI- 350

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----QGKGDKIRIVPLLPSVRKA 209
              + +  ++  CG+RISE  +L    +++D+         Q K  K  IVP+   V   
Sbjct: 351 ---ATMTMIVQECGMRISELCTLKKGCLLEDKDGDYFLKYYQWKMKKEHIVPISKEVVLL 407

Query: 210 ILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQ------RYIRQLRRYLGLPLS 259
           I    D       ++ + P    LF    G PL    F+       Y + +   LG    
Sbjct: 408 IKVRED------KVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKLGEIYR 461

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             AH  RHS  T +++NG     +Q  LGH     T  Y ++
Sbjct: 462 FHAHAFRHSVGTRMINNGVPQHIVQKFLGHESPEMTSRYAHI 503


>gi|298207372|ref|YP_003715551.1| integrase [Croceibacter atlanticus HTCC2559]
 gi|83850008|gb|EAP87876.1| integrase [Croceibacter atlanticus HTCC2559]
          Length = 406

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 135/318 (42%), Gaps = 49/318 (15%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ++  N  + VSF   K    ++++L++E+ +   T  SYEC       F           
Sbjct: 94  LDERNTTDSVSFAFDK----YIESLKVEKRIG--TAVSYECAKNSISSFN---------- 137

Query: 61  QTIRQLSYTEIRA-FISKRRTQKIGDRSLKRSLSGIKSFLKYLK----KRKITTESNILN 115
              + L++ +I   F+ K     + +R+   S+S +  +L+ L+    K+KI   +    
Sbjct: 138 ---KNLTFADITPNFLKKYENWMLENRN---SISTVGIYLRSLRAVYNKQKIDKTAYPFG 191

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGC-GLRISE 172
               K+  ++P + N K+ALT +D V  + H   E              LY C G+ + +
Sbjct: 192 ----KEKYTIPTSENTKKALT-IDEVGKIFHFEIEPNSTKEMARDYWIFLYLCNGMNVKD 246

Query: 173 ALSLTPQNIMDD------QSTLRIQGKGDKIRIVPLLPSVRKAILEY------YDLCPFD 220
              L   NI D+        T R Q K  +I  V L P   + I ++       D   F 
Sbjct: 247 FCLLKWSNISDNIIRYSRAKTKRSQKKQKEI-TVALKPQSLEIIRKWGQPSINKDAFIFP 305

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
            +LN ++   +          +  +Y+ Q+ + +G+    T +  RHSFAT L  +G ++
Sbjct: 306 -HLNDKMNEVQKRATHQQLTKIINKYVNQVAKDVGINKKVTTYFARHSFATILKRSGANI 364

Query: 281 RSIQSILGHFRLSTTQIY 298
             I  +LGH  +S T+ Y
Sbjct: 365 SMISDLLGHSDVSVTESY 382


>gi|256023557|ref|ZP_05437422.1| integrase family protein [Escherichia sp. 4_1_40B]
          Length = 358

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 28/186 (15%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--------TKWIDARNSAILYLLYGCGLRISEALS 175
           S P  L   +  T+ +  +   +HE         K  D   + ++ +    G R  EA++
Sbjct: 154 SYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICLSTGARWREAVN 213

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           LT   +   + T  ++ KG K R +P+   + + I+    L  F+               
Sbjct: 214 LTRSQVTKYRITF-VRTKGKKNRSIPISKELYEEIMA---LDGFNF-------------- 255

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  FQ      +  + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T
Sbjct: 256 --FTDCYFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMT 313

Query: 296 QIYTNV 301
             Y ++
Sbjct: 314 MRYAHL 319


>gi|255655014|ref|ZP_05400423.1| integrase [Clostridium difficile QCD-23m63]
          Length = 397

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 35/167 (20%)

Query: 162 LLYGCGLRISEALSLTPQNI-MD------DQSTLRIQGKGDKI---------RIVPLLPS 205
           +L G GLRISE   LT  +I +D      D   L+I   G  +         R++P+   
Sbjct: 218 ILLGTGLRISELCGLTEADIDLDKQLINVDHQLLKIADVGYYVETPKTKSGNRVIPMSEK 277

Query: 206 VRKA--------------ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           V +A              ILE Y    F LN N  LP    +  + +  G+ ++Y +  +
Sbjct: 278 VLEAFQRVLNKRKYAQTVILEGYTKFLF-LNRN-GLPKV-AVNYESMFRGLVRKYNKTQK 334

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             + LP   T HTLRH+F T L + G + +++Q I+GH  ++ T  Y
Sbjct: 335 --VALPKVMTPHTLRHTFCTTLANAGMNPKALQYIMGHSNINMTLNY 379


>gi|237710668|ref|ZP_04541149.1| phage integrase [Bacteroides sp. 9_1_42FAA]
 gi|229455390|gb|EEO61111.1| phage integrase [Bacteroides sp. 9_1_42FAA]
          Length = 379

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGDWMM 311
           Y GL  + T H  RH+FAT  L+NG  + ++  +LGH  + TTQ Y  V N++   D+ M
Sbjct: 314 YAGLDRNLTVHMSRHTFATMCLNNGVKMENVSKMLGHTNVRTTQQYAKVLNAEVEKDFEM 373


>gi|325856171|ref|ZP_08171996.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483642|gb|EGC86609.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 422

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 75/164 (45%), Gaps = 26/164 (15%)

Query: 167 GLRISEALSLTPQNIM---DDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY--DLCPFD 220
           GL   +   L P++I+   D    +RI+  K D   I+PLLP + K IL  Y  D    +
Sbjct: 257 GLARVDMQRLKPKHIIHNADGTEEIRIKRQKTDVEAIIPLLP-IAKQILSLYIKDKKADE 315

Query: 221 L---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSN 276
           L   NL I+   F  +     N G   R  + L          T H  RH+F+T + LSN
Sbjct: 316 LIFPNLTIRKASFACV-----NIGQICRIEKGL----------TFHMARHTFSTTICLSN 360

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           G  + ++  +LGH  + TTQIY  +      + M  + D+ H +
Sbjct: 361 GISMETLSKMLGHSNIGTTQIYGKITDHKIQEDMTALTDREHSA 404


>gi|291561494|emb|CBL40293.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4]
          Length = 399

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 92/219 (42%), Gaps = 46/219 (21%)

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           A+  KQ   L+   +    H +++ DA     +Y+L+  GLRISE   LT   I   +  
Sbjct: 191 AITRKQQRDLL-KFIQEDKHFSRYYDA-----IYILFHTGLRISEFCGLTVSEIEYGEMR 244

Query: 188 LRI---------------QGKGDK-IRIVPLL----------------PSVRKAILEYYD 215
           +++               + K DK IR VP+                 P V   +  Y  
Sbjct: 245 IKVDHQLQRTAQMQYVIEEPKTDKGIRYVPMTEAVAACFRRIIANRKTPKVEPMVEGYAG 304

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
               D N    +P+   +  +     + Q+Y +  R  + +P   T H  RH+F +++  
Sbjct: 305 FLFLDKN---DMPMV-ALHWEKYLEHIIQKYNKIYR--IQMP-KVTPHVCRHTFCSNMAK 357

Query: 276 NGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           +G + +++Q I+GH  +S T   YT+VN  +  + +  I
Sbjct: 358 SGMNPKTLQYIMGHADISVTLNTYTHVNFDDAKEEVYRI 396


>gi|189461279|ref|ZP_03010064.1| hypothetical protein BACCOP_01929 [Bacteroides coprocola DSM 17136]
 gi|189461291|ref|ZP_03010076.1| hypothetical protein BACCOP_01941 [Bacteroides coprocola DSM 17136]
 gi|189431991|gb|EDV00976.1| hypothetical protein BACCOP_01941 [Bacteroides coprocola DSM 17136]
 gi|189432021|gb|EDV01006.1| hypothetical protein BACCOP_01929 [Bacteroides coprocola DSM 17136]
          Length = 337

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 71/162 (43%), Gaps = 28/162 (17%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQS-----TLRIQGKGDKIRIVPLLPSVRKAILEYY 214
            L+GC  GLR S+   LT Q I    +     T R+Q K  +I   P+       + E +
Sbjct: 189 FLFGCLTGLRKSDIRQLTWQQIQPYTNGKMFVTTRMQ-KTKQIVHNPISDEAYGLLGERH 247

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           +   FD           G + K L  G  +R++       G+    T H  RHSF +  +
Sbjct: 248 EGLIFD-----------GFKDKMLQ-GPLKRWLLAA----GITKKITFHCTRHSFGSLHV 291

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             G D+  IQ+ LGH  ++TTQIY    SK     M E+ D+
Sbjct: 292 EMGTDMAVIQAYLGHKNITTTQIY----SKMAAQQMCEVVDK 329


>gi|169350994|ref|ZP_02867932.1| hypothetical protein CLOSPI_01771 [Clostridium spiroforme DSM 1552]
 gi|169292056|gb|EDS74189.1| hypothetical protein CLOSPI_01771 [Clostridium spiroforme DSM 1552]
          Length = 239

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 109/236 (46%), Gaps = 29/236 (12%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL--LHTSHET 149
           +SG++S+LK++K+  +  +  I  +R       LPR   +K  LTL ++    +     +
Sbjct: 12  ISGVRSYLKFIKRNDLLQQ--ISGLR-------LPRT--KKIILTLSNDEHNRIQAVLNS 60

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSVRK 208
             +  R+ +I  L Y  G+R  + ++L   +I      +  IQ K     IVPL   +  
Sbjct: 61  DLVTYRDKSIFLLGYILGIRACDIVALKLSDIDWHNDCIHFIQSKTGNQVIVPLYTEIGN 120

Query: 209 AILEYY----DLCPFDLNLNIQLPLFRGIRGKP-----LNPGVFQRYIRQLRRYLGLPLS 259
           ++  Y     +   ++      LP F+ +         +N  + +  I +  R+ G+   
Sbjct: 121 SLYLYITQEREKSDYENIFVSHLPPFKPLADHSACYTIVNKIMNKANITKDDRFFGI--- 177

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
              H LRH+ A+ L+  G  L +I SILGH   ++T IY + +S+   ++++ + D
Sbjct: 178 ---HFLRHNTASALVHKGVSLETISSILGHSDPNSTNIYISTDSERLKEYVLLMRD 230


>gi|311109777|ref|YP_003982629.1| phage integrase family protein 7 [Achromobacter xylosoxidans A8]
 gi|310764466|gb|ADP19914.1| phage integrase family protein 7 [Achromobacter xylosoxidans A8]
          Length = 389

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 99/249 (39%), Gaps = 37/249 (14%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA---LNEKQ--ALTL 137
           +G  SL+++LS + +   +L +       N L +   K+  + PR    L E+    +  
Sbjct: 122 LGPSSLRQALSILNAMFSWLVEAG-HLAGNPLALSRRKRRQAAPRVSRFLPEEHWDVVKA 180

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-------LRI 190
               +   S   +   +R   +  LLY  GLR+SE            +         L I
Sbjct: 181 AIEAMPVGSERERLHASRCRWLFSLLYIGGLRVSEICDARMGGFFSRRGADGRERWWLEI 240

Query: 191 QGKGDKIRIVPLLPSVRKAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLNP------- 240
            GKG K R+VP    +   ++ Y   + L P  L     +PL   +   P+ P       
Sbjct: 241 TGKGSKTRLVPATGELMTELMRYRKAHALSPLPLE-GEDMPLVMTLIA-PVKPMARSAIH 298

Query: 241 ----GVFQRYIRQLRRY---LGLPLS----TTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
               GV Q     LRR     G   +     + H +RH+  +HL S   DL+ ++  LGH
Sbjct: 299 ELVKGVMQAAAAALRRRGSDFGAAAAHLEQASTHWIRHTAGSHL-SEKVDLKVVRDNLGH 357

Query: 290 FRLSTTQIY 298
             +STT IY
Sbjct: 358 ANISTTSIY 366


>gi|111020189|ref|YP_703161.1| transposase B [Rhodococcus jostii RHA1]
 gi|110819719|gb|ABG95003.1| possible transposase B [Rhodococcus jostii RHA1]
          Length = 696

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 114/293 (38%), Gaps = 49/293 (16%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI-------SKRRTQKIGDRSLKRSLSGIK 96
           R+F+ +L  +  E   I ++ QL    I  ++       S+   Q +   ++K  L+ I 
Sbjct: 292 RRFVNWLGVHQPE---ITSLAQLDRATIEEYMRWLPTCPSQHTGQPLSTTTVKHELNAIA 348

Query: 97  SFLK---YLKKRKITTESNILNMRNLKKSNSLPRAL--NEKQALT-----LVDNVLLHTS 146
            F +     +  ++     + +    ++  S+PR L  +E  A+      L D +     
Sbjct: 349 GFCRDTAVWEWAEVPGRPLLTSRDTPRRPESIPRYLPQHELDAIMTAIGDLSDPLQRAAL 408

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS 205
              +W  AR   I  L + C       L   P         LRI  GKG   RIVPL P 
Sbjct: 409 LLLRWSGARRDEIRRLTWDC-------LDTYPGG----HPRLRIPVGKGHSERIVPLHPD 457

Query: 206 VRKAILEYYDLCPFDLNL---------NIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYLG 255
              A+     L     ++          +     R  RGK L+   +F    R +    G
Sbjct: 458 AAAALDHAIGLARAQRSIARIDEVTGRRVDYVFIR--RGKLLSVKTLFDEAFRTVCAATG 515

Query: 256 L-----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           L       + +AH LRH+  T L   G  +++I +ILGH   + + IY+ ++ 
Sbjct: 516 LVDDRGAPTVSAHRLRHTLGTQLAEGGARIQTIMAILGHRSATMSMIYSRISD 568


>gi|291514614|emb|CBK63824.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 423

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 60/127 (47%), Gaps = 22/127 (17%)

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG-VF--------QRYIRQL 250
           V LLP V KAILE Y           ++P  R  R  P NPG VF           ++ +
Sbjct: 293 VKLLP-VAKAILEKY-----------RIPANRFNRLFPENPGKVFPVASLKSSDVCLKHI 340

Query: 251 RRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            R   +  +   H  RH+FAT + L NG  L ++  +LGH   +TTQIY  V ++   + 
Sbjct: 341 ARQCEITKNLKFHMARHTFATTVSLMNGIPLETVSKMLGHKYTTTTQIYAKVTNQMIDNA 400

Query: 310 MMEIYDQ 316
           +  I DQ
Sbjct: 401 ISRIEDQ 407


>gi|315144921|gb|EFT88937.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2141]
          Length = 392

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 112/252 (44%), Gaps = 42/252 (16%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNI---------LNMRNLKKS-NSLPRALNEKQALT 136
           SL+  +  +     Y KK+ +  E+ +         L++++LK+S NSL     E + LT
Sbjct: 133 SLQSLVQVLNMVFNYCKKKNLINENPMKFVKMPKYQLSLKDLKESVNSL-----EDKFLT 187

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL------RI 190
            VD +    ++   + +   S + ++L+  G R+SEAL+L PQ+I  +++ +       +
Sbjct: 188 -VDELRAFLNYGIVYEELPMSVLFHVLFYTGCRVSEALALQPQDIDFERNEILFYKQTAV 246

Query: 191 QGKGDKIRI-----------VPLLPSVRKAILEYYD-LCPFDLNLNIQLP-------LFR 231
           +GK    RI           VP+ P V + + E  D L     N N  +        L  
Sbjct: 247 KGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRNSNFVVDETYLFVYLDP 306

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           G RG P        ++++     G+      H  RH+ A+ L++       ++  LGH  
Sbjct: 307 GKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMAS-LVAEYCSWDVLKDHLGHTD 365

Query: 292 LSTTQIYTNVNS 303
            +T++IY ++ S
Sbjct: 366 STTSKIYRHLTS 377


>gi|194435212|ref|ZP_03067439.1| resolvase [Shigella dysenteriae 1012]
 gi|194416535|gb|EDX32677.1| resolvase [Shigella dysenteriae 1012]
          Length = 274

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +  T HT RHS+A HL  +G   R +QS+LGH    +T+IYT V S
Sbjct: 198 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFS 243


>gi|319642758|ref|ZP_07997399.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|317385613|gb|EFV66551.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
          Length = 287

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 20/150 (13%)

Query: 162 LLYGC--GLRISEALSLTPQNIM-DDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYD 215
            L+ C  G   ++A+S+T +N+  DD+ +L ++    K D +  V LLP     I +Y +
Sbjct: 131 FLFACYTGTAYADAVSITQENLFRDDEGSLWLKYRRKKTDYLGRVKLLPEALMLIKKYRE 190

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
                   + +  LF      P +    +  ++ LR   GL      H  RHSFA+ + L
Sbjct: 191 --------DTRATLF-----PPQDYHTLRANMKSLRLMAGLSQDLVYHMGRHSFASLVTL 237

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             G  + +I  +LG+  + TTQIY  V  K
Sbjct: 238 EEGVPIETISKMLGYSNIKTTQIYARVTPK 267


>gi|301162158|emb|CBW21703.1| putative phage integrase/recombinase [Bacteroides fragilis 638R]
          Length = 308

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 26/164 (15%)

Query: 160 LYLLYGCGLRISE--ALSLTPQNIMDDQSTLR--------IQGKGDKIRIVPLLPSVRKA 209
           +Y+    GLRI E  AL  +  N+ D   T+         I+G+     +V   P  + +
Sbjct: 133 IYISLSTGLRIGEICALKWSDINVYDGILTVNRTIERIYIIEGERKHTELVINTPKTKNS 192

Query: 210 ILEYYDLCPFDLNLNIQL-PLFRGIRGK---------PLNPGVFQRYIRQLRRYLGLPLS 259
             E     P +  L   L PL + +            P  P  ++ Y ++L   L +P  
Sbjct: 193 CRE----IPINKELLTMLKPLKKVVNDDYYILTNDECPTEPRTYRNYYKRLMEKLDIP-K 247

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN 302
              H LRHSFAT  +  G D +++  +LGH  +STT  +Y + N
Sbjct: 248 LKYHGLRHSFATRCIEVGCDYKTVSVLLGHSNISTTLDLYVHPN 291


>gi|296453592|ref|YP_003660735.1| phage integrase family protein [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296453893|ref|YP_003661036.1| phage integrase family protein [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183023|gb|ADG99904.1| phage integrase family protein [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183324|gb|ADH00206.1| phage integrase family protein [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 351

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 117/298 (39%), Gaps = 31/298 (10%)

Query: 19  QNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++WL + L   RG S  T+++Y      ++ +L      + +           +  ++  
Sbjct: 21  RDWLHHWLPKVRGSSPKTVEAYRIGLESYVRWLETTEGTQRSHIGFGHFDRARLGRWVEW 80

Query: 78  RRTQK-IGDRSLKRSLSGIKSFLKY--LKKRKITTESNILNMRNLKKSNSLP-RALNEKQ 133
            RT++   DR++   ++ ++ FL +  L+   +T   N      +K     P   L E+ 
Sbjct: 81  MRTERGYSDRTIMPRMTTMRVFLDHAGLEHPALTALGNDAAGIRVKPPAREPVDHLGEEH 140

Query: 134 ALTLVDNVLLHTSHETKWI--DA---RNSAILYLLYGCGLRISEALSLTPQNI-MDDQST 187
              L+          T W   DA   RN  +  L+Y    RI E  +LT  ++ MD  + 
Sbjct: 141 TKALL----------TAWGTGDAKSRRNRMLPILMYDTAARIGELAALTIADVGMDKPAR 190

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQR- 245
           + + GK  K R+VPL    R  +  Y +   P     +   PLF   R   + P    R 
Sbjct: 191 VTLTGKRGKSRVVPLGERTRTHLAAYLEEFHPGPSTRDGDRPLFHSTRNGAIQPLSVDRI 250

Query: 246 ------YIRQLRRYL--GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                    + RR     +P     H +R + A  L   G  L  I  +LGH  +STT
Sbjct: 251 DEIPKTAAARARRGTCPSMPERVHCHLIRRTRAMDLYQQGVPLPLIMQLLGHESMSTT 308


>gi|213608065|ref|ZP_03368891.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 293

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 74/184 (40%), Gaps = 28/184 (15%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--------TKWIDARNSAILYLLYGCGLRISEALS 175
           S P  L   +  T+ +  +   +HE         K  D   + ++ +    G R  EA++
Sbjct: 130 SYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICLSTGARWREAVN 189

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           LT   +   + T  ++ KG K R +P+   + + I+    L  F+               
Sbjct: 190 LTRSQVTKYRITF-VRTKGKKNRSIPISKELYEEIMA---LDGFNF-------------- 231

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  FQ      +  + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T
Sbjct: 232 --FTDCYFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMT 289

Query: 296 QIYT 299
             Y 
Sbjct: 290 MRYA 293


>gi|210612450|ref|ZP_03289308.1| hypothetical protein CLONEX_01509 [Clostridium nexile DSM 1787]
 gi|210151558|gb|EEA82565.1| hypothetical protein CLONEX_01509 [Clostridium nexile DSM 1787]
          Length = 415

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 93/220 (42%), Gaps = 49/220 (22%)

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           A+  KQ   L+   +    H +++ DA     +Y+L+  GLRISE   LT   I   +  
Sbjct: 207 AITRKQQRDLL-KFIQEDKHFSRYYDA-----IYILFHTGLRISEFCGLTVSEIEFGEMR 260

Query: 188 LRI---------------QGKGDK-IRIVPLL----------------PSVRKAILEYYD 215
           +++               + K DK IR VP+                 P V   +  Y  
Sbjct: 261 IKVDHQLQRTAQMQYVIEEPKTDKGIRYVPMTEAVAACFRRIITNRKTPKVEPMVEGYAG 320

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
               D N    +P+   +  +     + Q+Y +  R  + +P   T H  RH+F +++  
Sbjct: 321 FLFLDKN---DMPMV-ALHWEKYLEHIIQKYNKIYR--IQMP-KVTPHVCRHTFCSNMAK 373

Query: 276 NGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIY 314
           +G + +++Q I+GH  +S T   YT+VN  +  +   E+Y
Sbjct: 374 SGMNPKTLQYIMGHADISVTLNTYTHVNFDDAKE---EVY 410


>gi|194438425|ref|ZP_03070515.1| integrase for prophage [Escherichia coli 101-1]
 gi|194422649|gb|EDX38646.1| integrase for prophage [Escherichia coli 101-1]
          Length = 350

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 28/186 (15%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--------TKWIDARNSAILYLLYGCGLRISEALS 175
           S P  L   +  T+ +  +   +HE         K  D   + ++ +    G R  EA++
Sbjct: 154 SYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICLSTGARWREAIN 213

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           LT   +   + T  ++ KG K R +P+   + + I+    L  F+   +           
Sbjct: 214 LTRSQVTKYRITF-VRTKGKKNRSIPISKELYEEIMA---LDGFNFFTDC---------- 259

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  FQ      +  + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T
Sbjct: 260 ------YFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMT 313

Query: 296 QIYTNV 301
             Y ++
Sbjct: 314 MRYAHL 319


>gi|168698263|ref|ZP_02730540.1| Phage integrase [Gemmata obscuriglobus UQM 2246]
          Length = 349

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 101/290 (34%), Gaps = 31/290 (10%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           + R  S  T   Y  D  QF+            +  +R      I A+  +     + + 
Sbjct: 56  LTRSPSVETRSGYARDLNQFMAHAGIAVRAWDELPHVRP---GHIAAWRDQLLAAGLTNA 112

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-----ALNEKQALTLVDNV 141
           ++ R LS ++S   YL  R    E           +  +PR     AL  +    L+D  
Sbjct: 113 AISRKLSVVRSLFGYL--RAYGYEGPNPADTAFVAAPPVPRDGKTVALTPEDCRRLLDAT 170

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              T         R+ A+L +L   G R+ E   L +           L I+GKG K R 
Sbjct: 171 SAQTPE-----GVRDRALLAVLAFTGCRVGELCRLRVGDYKTSGGHKVLEIRGKGGKERR 225

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR-----------GIRGKPLNPGVFQRYIR 248
           VPL P   + +  + +            PLFR           G R  PL+    Q  + 
Sbjct: 226 VPLHPEAFERLDAWLETAGLQ---GATGPLFRPVRTARGGGREGFRAAPLSRRAVQVLVA 282

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +  R L L    T H+ R +  T     G D+  +Q   GH    TT  Y
Sbjct: 283 RYVRRLQLDPHVTVHSFRVTALTTARERGADIVDLQDFAGHADPRTTLGY 332


>gi|328554892|gb|AEB25384.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens TA208]
          Length = 182

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 74/169 (43%), Gaps = 13/169 (7%)

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           K +  R+  +  L    GLRIS+ L+L   ++         +GK  K +      +++KA
Sbjct: 18  KALRGRDLLLFTLGINSGLRISDILALKVGDVRGKDFVAITEGKTKKSKRFFFNAAIKKA 77

Query: 210 ILEYYDLCPFDLNLNIQL-PLFRGIRG--KPLNPGVFQRYIRQLRRYLGLPLSTTA-HTL 265
           +    DL P + N +  L P  +G +   +    G+    I   R  L   L T   H+L
Sbjct: 78  VA---DLIPAEANDDDWLFPSRKGSKAITRVRAYGILNEAIE--RAGLSEKLGTIGCHSL 132

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           R +F  H   NG DL  +QSI  H + S T  Y  +N     D + E+Y
Sbjct: 133 RKTFGYHAYKNGTDLTLLQSIFNHSKQSVTLRYIGINQ----DRIDEVY 177


>gi|206578497|ref|YP_002236690.1| type 1 fimbriae regulatory protein FimE [Klebsiella pneumoniae 342]
 gi|288933662|ref|YP_003437721.1| integrase [Klebsiella variicola At-22]
 gi|206567555|gb|ACI09331.1| type 1 fimbriae regulatory protein FimE [Klebsiella pneumoniae 342]
 gi|288888391|gb|ADC56709.1| integrase family protein [Klebsiella variicola At-22]
          Length = 202

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 64/157 (40%), Gaps = 2/157 (1%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEY 213
           R+  ++ L +  G+RISE L L   ++   +  + ++  K     I PL    R+AI  +
Sbjct: 27  RDYCLILLAFRHGMRISELLDLHYHDLDLHEGRVNVRRLKNGFSTIHPLRFDEREAIERW 86

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
             +            LF   RG PL+     R IR      G    T  H LRH+    L
Sbjct: 87  SQVRAGWKAAAKTDALFISRRGTPLSRQQAYRIIRSAGENAGTVTHTHPHMLRHACGYEL 146

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-GGDW 309
              G D R IQ  LGH  +  T  YT  N+    G W
Sbjct: 147 AERGTDTRLIQDYLGHRNIRHTVRYTASNAARFAGIW 183


>gi|198274804|ref|ZP_03207336.1| hypothetical protein BACPLE_00963 [Bacteroides plebeius DSM 17135]
 gi|198276070|ref|ZP_03208601.1| hypothetical protein BACPLE_02255 [Bacteroides plebeius DSM 17135]
 gi|198270882|gb|EDY95152.1| hypothetical protein BACPLE_02255 [Bacteroides plebeius DSM 17135]
 gi|198272251|gb|EDY96520.1| hypothetical protein BACPLE_00963 [Bacteroides plebeius DSM 17135]
          Length = 372

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 71/162 (43%), Gaps = 28/162 (17%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQS-----TLRIQGKGDKIRIVPLLPSVRKAILEYY 214
            L+GC  GLR S+   LT Q I    +     T R+Q K  +I   P+       + E +
Sbjct: 224 FLFGCLTGLRKSDIRQLTWQQIQPYTNGKMFVTTRMQ-KTKQIVHNPISDEAYGLLGERH 282

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           +   FD           G + K L  G  +R++       G+    T H  RHSF +  +
Sbjct: 283 EGLIFD-----------GFKDKMLQ-GPLKRWLLAA----GITKKITFHCTRHSFGSLHV 326

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             G D+  IQ+ LGH  ++TTQIY    SK     M E+ D+
Sbjct: 327 EMGTDMAVIQAYLGHKNITTTQIY----SKMAAQQMCEVVDK 364


>gi|328913318|gb|AEB64914.1| Tyrosine recombinase xerC [Bacillus amyloliquefaciens LL3]
          Length = 385

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 35/181 (19%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-----------------QGKGD------KIR 198
           L+   GLRI EAL+LT  +I  ++ T+++                 + K         I 
Sbjct: 206 LMARTGLRIGEALALTWNDIDFEECTIKVNKTLVYPTNSTPYLSTPKSKAGLRIIKLDIH 265

Query: 199 IVPLLPSVR----KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            V LL   R    + +L+Y +    + ++     +F    G+ L   V + Y +++ +  
Sbjct: 266 TVQLLKKHRINRKEVVLKYKNYKKPEDDI-----VFYQHDGRWLRTNVVREYFKEICKRA 320

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDWMMEI 313
            LP+  + H LRHS A HL+    DL+ +   LGH  +  T   Y +V  K   D  +E+
Sbjct: 321 ELPI-LSPHALRHSHAVHLIEAKADLKFVSERLGHSSIKITADTYLHVTKKIEND-ALEM 378

Query: 314 Y 314
           Y
Sbjct: 379 Y 379


>gi|268611299|ref|ZP_06145026.1| phage integrase family site specific recombinase [Ruminococcus
           flavefaciens FD-1]
          Length = 360

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 106/252 (42%), Gaps = 31/252 (12%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN-- 118
           +TI  +    + +FI   +++K+  R ++  L  + S  KY          +I N  +  
Sbjct: 99  KTISSIQKDSLYSFIKTLQSKKLSSRYIRDILVLLSSVFKYA-----VNTYHIYNPFDDV 153

Query: 119 --LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              KK  S  + L+E +   L D +  + +        R +  + L Y  G+RI E  +L
Sbjct: 154 VIPKKKYSDVKLLDEDEQQILRDELFSNPN--------RTTLGIALSYYTGIRIGELCAL 205

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE-----YYDLCPFDLNLNIQLPLFR 231
             ++I  ++  L ++    +I++    P  +  I E        + P    +   + +++
Sbjct: 206 QWKDIDIEKRLLTVRKTVQRIQLPYGTPKTKVIITEPKSESSVRVIPIPDCIITLMKIYK 265

Query: 232 GI--------RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
           G         + KP  P   Q       + +GLP S   H LRH FA++ +  G D++S+
Sbjct: 266 GNLDDFILSGKEKPTEPRTMQYRFNSFLKNVGLP-SIHFHALRHLFASNCIKLGADVKSL 324

Query: 284 QSILGHFRLSTT 295
             ILGH  +  T
Sbjct: 325 SEILGHSSVEIT 336


>gi|90961742|ref|YP_535658.1| Phage integrase [Lactobacillus phage Sal1]
 gi|90820936|gb|ABD99575.1| Phage integrase [Lactobacillus phage Sal1]
 gi|300214518|gb|ADJ78934.1| Phage integrase [Lactobacillus salivarius CECT 5713]
          Length = 315

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 29/168 (17%)

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-------QGKGDK------ 196
           K++++  +    +L   GLR +E L +T ++I  ++ T+ I       +G  D+      
Sbjct: 131 KYLNSSYANFFLILLKTGLRFAELLGITLEDIDFEKKTISINKTLDYKKGAYDENFSRRF 190

Query: 197 --------IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
                   IR +P+  +V       Y         +    +F  I+G   N  +  + + 
Sbjct: 191 KSTKNKYSIRTIPVDDAV------IYMFWRNAKGADKDESIFGSIKGFQYNSSLNNK-LE 243

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           Q  +Y G+P+  T H LRH  AT+L+S G D R++   LGH   S T+
Sbjct: 244 QTCKYAGVPV-ITLHGLRHEHATYLVSQGIDSRAVAERLGHVDDSVTR 290


>gi|298571686|gb|ADI87838.1| hypothetical protein AKSOIL_0330 [uncultured bacterium Ak20-3]
          Length = 298

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 117/277 (42%), Gaps = 32/277 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G    T+QSY  D RQF  FL    E K ++ ++   +    R  +  R      + S +
Sbjct: 21  GKKDATVQSYCRDLRQFFNFL---NENKASLSSVNHQTLLHYRTAMQARNDGGKSN-SFR 76

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R++  I+ F + L +        + ++    +    PR L     L  V+ +L  +S+  
Sbjct: 77  RAVIAIRQFYRMLPQFSGLPLDALDSIPIPNREEIAPRKLK----LEDVERLLQGSSNSV 132

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL------- 202
              +AR+ AI+ L    G+++SE + L  ++ +  QST  +   G++ R++ L       
Sbjct: 133 SLKEARDRAIVSLFCFEGIKVSELIQLEWKHFLSPQSTASLLIPGERKRVISLNSRTHMN 192

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           L + +KA+ +     P +        +F G +G+   P +  +  R   +++   L  + 
Sbjct: 193 LNAYQKAVQDNQASLPKNYK------MFLGFKGRDF-PIISSKVSRHGLKFMLYELGESC 245

Query: 263 -------HTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                    LRH    H L +G +    + I+ HF L
Sbjct: 246 GVSGLNTEILRHYAIQHHLDSGAN---PEDIMKHFGL 279


>gi|134291527|ref|YP_001115296.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134134716|gb|ABO59041.1| phage integrase family protein [Burkholderia vietnamiensis G4]
          Length = 319

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 118/262 (45%), Gaps = 22/262 (8%)

Query: 49  FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT 108
           FL +  E  + I +I  +    + A+I + +TQ +   ++K+ L+ I+    +L   +I 
Sbjct: 51  FLTWCGE--MGIPSIAAVQPLHVAAWI-ELQTQALSAPTVKQQLAAIRHLFDWLVTGQIV 107

Query: 109 TESNILNMR---NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
           + +   ++R   +  ++ + P  L+  +A  L+D++ + T      I  R+ A++ L+  
Sbjct: 108 SVNPAASVRGPSHPARTGATP-VLDRTEARQLLDSIDVSTP-----IGLRDRALIALMVF 161

Query: 166 CGLRISEALSLTPQNIMDDQSTL--RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
              RI  AL++   ++   Q  L  R++ KG K   +P   ++  A+  Y +        
Sbjct: 162 SFARIGAALAMRLDDVYVQQRRLWVRLREKGGKAHAMPCHHTLEAALHAYLEHLS-GTGA 220

Query: 224 NIQLPLFRGI-RGK------PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
             + PLFR I RG       PL        +R+     G+  +   HT R +  T  L N
Sbjct: 221 EPKGPLFRTIARGTRQLSCTPLPQANAYAMVRRRAAAAGIATAIGNHTFRATGITAYLQN 280

Query: 277 GGDLRSIQSILGHFRLSTTQIY 298
           GG L S  ++  H    TTQ+Y
Sbjct: 281 GGTLESAAAMANHASTRTTQLY 302


>gi|295694704|ref|YP_003587942.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295410306|gb|ADG04798.1| integrase family protein [Bacillus tusciae DSM 2912]
          Length = 303

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 17/216 (7%)

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +K+F  +  + +   ++   N+   +K++  PR L+     TL    LL    +  +   
Sbjct: 75  LKAFFSWCIREEYLPKNPADNIPK-RKNDGTPRNLDHD---TL--KRLLALPRKDTYAGV 128

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-----QGKGDKIRIVPLLPSVRKA 209
           R+ A++      G R  EAL L P +   + + L +       K    R V + P   KA
Sbjct: 129 RDYALMLFQLDTGTRPGEALQLLPDHF--NLAALEVIIPSGTAKTRAARTVVVSPQTAKA 186

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           I     + P D   ++  P+F    G+      + + + +    LG+ L  TA+ LRHS 
Sbjct: 187 IRRLLSVRPADWTDDV--PVFASASGRRFTVHGWDQRLAKYGERLGVRL--TAYMLRHSS 242

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           A   L  GG + ++Q  LGH  L  T+ Y ++   +
Sbjct: 243 AILFLRGGGHVFALQRQLGHTSLVMTKRYVHLADSD 278


>gi|284023378|ref|ZP_06377776.1| putative integrase [Staphylococcus aureus subsp. aureus 132]
          Length = 404

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 84/208 (40%), Gaps = 32/208 (15%)

Query: 132 KQALTLVDNVLLHTSHETKWIDARN----SAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           K+ L   D ++ H  H T+    RN     A++      G+RI E L++   N+  +  T
Sbjct: 192 KELLQCFDYLIKHKRHATR---KRNYEMVKALVEFQINNGMRIGELLAIKTDNVDVENKT 248

Query: 188 LRIQGKGDKI--------------------RIVPLLPS----VRKAILEYYDLCPFDLNL 223
           L I G  + +                    R + L       ++K +LE      ++   
Sbjct: 249 LEIDGTINWVTDVETGAFGVKETTKTSKSYRTIGLTAQSINLLKKLMLENKKENQWNDKF 308

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             +  +F    G P++       I++      +    T HTLRH+  + L   G +L++I
Sbjct: 309 IDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQLGINLKAI 368

Query: 284 QSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           Q  +GH    TT +IYT+V  K   D M
Sbjct: 369 QDRVGHSDYKTTLEIYTHVTDKMAQDMM 396


>gi|257424935|ref|ZP_05601362.1| integrase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427603|ref|ZP_05604002.1| integrase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430236|ref|ZP_05606619.1| integrase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257432935|ref|ZP_05609295.1| integrase [Staphylococcus aureus subsp. aureus E1410]
 gi|257435839|ref|ZP_05611887.1| integrase [Staphylococcus aureus subsp. aureus M876]
 gi|258449533|ref|ZP_05697635.1| integrase [Staphylococcus aureus A6224]
 gi|282913659|ref|ZP_06321448.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus M899]
 gi|282923576|ref|ZP_06331256.1| integrase, superantigen-encoding pathogenicity islands SaPI
           [Staphylococcus aureus subsp. aureus C101]
 gi|293500701|ref|ZP_06666552.1| integrase, superantigen-encoding pathogenicity islands SaPI
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293509651|ref|ZP_06668362.1| integrase, superantigen-encoding pathogenicity islands SaPI
           [Staphylococcus aureus subsp. aureus M809]
 gi|293524237|ref|ZP_06670924.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus
           M1015]
 gi|257272505|gb|EEV04628.1| integrase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275796|gb|EEV07269.1| integrase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257279013|gb|EEV09624.1| integrase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257282350|gb|EEV12485.1| integrase [Staphylococcus aureus subsp. aureus E1410]
 gi|257285030|gb|EEV15149.1| integrase [Staphylococcus aureus subsp. aureus M876]
 gi|257857041|gb|EEV79940.1| integrase [Staphylococcus aureus A6224]
 gi|282314444|gb|EFB44834.1| integrase, superantigen-encoding pathogenicity islands SaPI
           [Staphylococcus aureus subsp. aureus C101]
 gi|282322691|gb|EFB53013.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus M899]
 gi|290921200|gb|EFD98261.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291095706|gb|EFE25967.1| integrase, superantigen-encoding pathogenicity islands SaPI
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291467748|gb|EFF10263.1| integrase, superantigen-encoding pathogenicity islands SaPI
           [Staphylococcus aureus subsp. aureus M809]
          Length = 406

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 30/171 (17%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGK---------GDKIRIVPLLPS------------ 205
           G+RI E L++  ++I  D  +L I G          G  ++      S            
Sbjct: 230 GMRIGEMLAIKNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSC 289

Query: 206 --VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
             ++KAILE      ++   LN N    +F   +G P+    F + +R+  + +G+    
Sbjct: 290 EILKKAILENKKDSKWNDGYLNRNF---VFTNHKGNPMQTERFNKILRESAKDVGIEKEI 346

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           ++H LRHS  + L   G  L++I   +GH    TT  IY++V  +   D M
Sbjct: 347 SSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMM 397


>gi|254883530|ref|ZP_05256240.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|254836323|gb|EET16632.1| integrase [Bacteroides sp. 4_3_47FAA]
          Length = 371

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 14/146 (9%)

Query: 163 LYGC--GLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           L+ C   LR+S+ LSL  + I+D  +  + +     K +   ++P   +A          
Sbjct: 223 LFSCLTSLRLSDILSLCWEEIVDFAAGGKCVHTITQKTKTEDIIPISDEA---------- 272

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
            L L    P  +G+  K L     Q+ +++  R  G+  + T H+ R ++AT   + G D
Sbjct: 273 -LELIGYSPEKKGLVFKGLKRSWTQQPMKEWIRSAGITKNITFHSYRRTYATLQAAAGTD 331

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKN 305
           +R+IQS + H  ++TTQ Y  V   N
Sbjct: 332 IRTIQSNMAHKSITTTQRYMKVVDSN 357


>gi|300770362|ref|ZP_07080241.1| phage integrase family site-specific recombinase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762838|gb|EFK59655.1| phage integrase family site-specific recombinase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 419

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 14/169 (8%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD--- 215
            ++ +Y  GLR S+ L L  +++ DD+  +++  +  K  +   L +V  AIL  Y    
Sbjct: 244 FVFAMYTGGLRFSDLLMLRWEDVQDDER-VKVYTQKTKTNLTVKLTNVSLAILSIYRPST 302

Query: 216 -------LCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                  + PF D + N   P +   R   +N  V    +R++ +  G+      H  RH
Sbjct: 303 YTNASGFIFPFLDNDKNYSNPKYLYRRISSIN-AVANTRLREIGKKSGINKHLHFHMSRH 361

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +FAT  L  G  L  I  ++GH  ++ T+ Y  + +K   D  M++ D+
Sbjct: 362 TFATRGLEIGMPLTHISKLMGHSSVAMTENYAKLINKE-LDKAMDLIDK 409


>gi|221314052|ref|ZP_03595857.1| phage integrase family site specific recombinase [Bacillus subtilis
           subsp. subtilis str. NCIB 3610]
 gi|255767432|ref|NP_389721.2| bacteriophage integrase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|321311485|ref|YP_004203772.1| putative bacteriophage integrase [Bacillus subtilis BSn5]
 gi|259710485|sp|O35009|YOEC_BACSU RecName: Full=Probable integrase/recombinase yoeC
 gi|225185059|emb|CAB13722.2| putative bacteriophage integrase [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|291484453|dbj|BAI85528.1| hypothetical protein BSNT_03048 [Bacillus subtilis subsp. natto
           BEST195]
 gi|320017759|gb|ADV92745.1| putative bacteriophage integrase [Bacillus subtilis BSn5]
          Length = 181

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 12/147 (8%)

Query: 161 YLLYGCG----LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           Y L+  G    LRIS+ L L  +++ +       + K  K R + +L S+++ I EY   
Sbjct: 28  YFLFIFGINSALRISDILPLQVKDVQNKDHLWATESKTKKKRKILILESLKQEIYEYTK- 86

Query: 217 CPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
              D+  N  L  F+ +R  KP++     R +R+     GL    T HTLR +F  H   
Sbjct: 87  ---DMKENEYL--FKSVRTRKPISRIQAYRILREAAAACGLEEIGT-HTLRKTFGYHFYQ 140

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVN 302
              D+  +Q IL H   S T  Y  ++
Sbjct: 141 RTKDIAELQRILNHSSPSITMRYIGID 167


>gi|239828404|ref|YP_002951028.1| integrase [Geobacillus sp. WCH70]
 gi|239808697|gb|ACS25762.1| integrase family protein [Geobacillus sp. WCH70]
          Length = 301

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 124/291 (42%), Gaps = 26/291 (8%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           E    K T+ SY      FL +     E  I I+  R +   E  +++  +  +K    +
Sbjct: 14  EEAKDKKTIASYRTTVAHFLEWYE-QREGNIIIEETRPVDVKEYISYLKHQCKRKPA--T 70

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLK----KSNSLPRALNEKQALTLVDNVLL 143
           + + ++ +K F  YL +  +  ++ +  ++  K    + +S  + L +++    +  V L
Sbjct: 71  INKYIAALKVFFSYLTEVGLVKDNPMTRIKTEKIEYAQGSSQTKWLTKEEQERFISYVEL 130

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIV 200
               + ++   RN AI+ L+   GLR++E  SL   +I    +D   +  QGKG+K   V
Sbjct: 131 E---KNEFKRLRNLAIIDLMIYAGLRVNEVASLELSDIQVKGNDVEIIVRQGKGNKYASV 187

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            L+    + + ++     +  NL          LF   R   L     Q+    L +Y  
Sbjct: 188 LLVQKYSRNLRKW---LKYRQNLEKSTHKESQRLFVSERSMFLTERAIQK---MLTKYAD 241

Query: 256 LP--LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           L    + T H  RHSF  +L + G  +  I+ +  H  + TT IY + + +
Sbjct: 242 LANMKNITPHRFRHSFCKNLANAGTPIEIIRRLARHESIQTTAIYVDASKE 292


>gi|150401987|ref|YP_001329281.1| phage integrase family protein [Methanococcus maripaludis C7]
 gi|159906222|ref|YP_001549884.1| integrase family protein [Methanococcus maripaludis C6]
 gi|150033017|gb|ABR65130.1| phage integrase family protein [Methanococcus maripaludis C7]
 gi|159887715|gb|ABX02652.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 340

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 10/153 (6%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213
           R++  + LL+  G R+SEA +LT      ++   ++   K  + R V       K +L Y
Sbjct: 175 RDATFIRLLWDTGCRVSEACNLTYSASDLNKGVFKLTHTKTKQDRTVVCSKETLK-LLNY 233

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLN----PGVFQRYIRQLRRYLGLPLST--TAHTLRH 267
           +     D + + +  LF+   G  LN       F+  +++L++   +P +     H+LRH
Sbjct: 234 F--LQHDPDNSPEDHLFKSANGAKLNKYTLSARFRNIVKELKKDGTVPKNQWLVIHSLRH 291

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             A  LL+ G  +  ++  LGH  + TT IY++
Sbjct: 292 GRAVDLLNKGVSIDVVKEYLGHASIETTLIYSH 324


>gi|157160328|ref|YP_001457646.1| phage integrase family site specific recombinase [Escherichia coli
           HS]
 gi|157066008|gb|ABV05263.1| site-specific recombinase, phage integrase family [Escherichia coli
           HS]
 gi|323938204|gb|EGB34464.1| phage integrase [Escherichia coli E1520]
          Length = 343

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 28/186 (15%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--------TKWIDARNSAILYLLYGCGLRISEALS 175
           S P  L   +  T+ +  +   +HE         K  D   + ++ +    G R  EA++
Sbjct: 154 SYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICLSTGARWREAVN 213

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           LT   +   + T  ++ KG K R +P+   + + I+    L  F+               
Sbjct: 214 LTRSQVTKYRITF-VRTKGKKNRSIPISKELYEEIMA---LDGFNF-------------- 255

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  FQ      +  + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T
Sbjct: 256 --FTDCYFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMT 313

Query: 296 QIYTNV 301
             Y ++
Sbjct: 314 MRYAHL 319


>gi|330998378|ref|ZP_08322202.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329568484|gb|EGG50289.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 394

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 14/146 (9%)

Query: 163 LYGC--GLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           L+ C   LR+S+ LSL  + I+D  +  + +     K +   ++P   +A          
Sbjct: 246 LFSCLTSLRLSDILSLCWEEIVDFAAGGKCVHTITQKTKTEDIIPISDEA---------- 295

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
            L L    P  +G+  K L     Q+ +++  R  G+  + T H+ R ++AT   + G D
Sbjct: 296 -LELIGYSPEKKGLVFKGLKRSWTQQPMKEWIRSAGITKNITFHSYRRTYATLQAAAGTD 354

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKN 305
           +R+IQS + H  ++TTQ Y  V   N
Sbjct: 355 IRTIQSNMAHKSITTTQRYMKVVDSN 380


>gi|296169376|ref|ZP_06851000.1| phage integrase family domain protein [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295895965|gb|EFG75656.1| phage integrase family domain protein [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 205

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 82/181 (45%), Gaps = 32/181 (17%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQ------------NIMDDQSTLRIQGKGDKIRIVP 201
           ARN A+  L    GLRI+EA  L               N+   + + R   KG K R+VP
Sbjct: 20  ARNYAVARLAADVGLRINEARMLDLDDVRWELGRFGKLNVRHGKGSRR---KGPKPRLVP 76

Query: 202 LLPSVRKAILEYYD--LCPFDLNLNIQL-PLF----RGIRGKPL--NPGVFQRYI----- 247
           L+    +++  + +  L  FD++ N    PLF    + I G  +     V++R +     
Sbjct: 77  LINGADRSLRWFIEDVLGLFDIDPNSHAAPLFPSERKNIDGTCMRATADVYRRSLAEAAD 136

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           R L  + G     T H LRH  A+ L   G +L +IQ + GH   +TT  Y +V++ +  
Sbjct: 137 RHLPAWSG---KLTPHVLRHFCASQLYLGGMNLFAIQELCGHAWTATTARYIHVHATHVE 193

Query: 308 D 308
           D
Sbjct: 194 D 194


>gi|283488406|ref|YP_003368522.1| resolvase [Citrobacter rodentium ICC168]
 gi|282952113|emb|CBG91843.1| resolvase [Citrobacter rodentium ICC168]
          Length = 274

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +  T HT RHS+A HL  +G   R +QS+LGH    +T+IYT V S
Sbjct: 198 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFS 243


>gi|291300706|ref|YP_003511984.1| integrase family protein [Stackebrandtia nassauensis DSM 44728]
 gi|290569926|gb|ADD42891.1| integrase family protein [Stackebrandtia nassauensis DSM 44728]
          Length = 337

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 9/151 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL-LPSVRK----- 208
           R++AI+ +LY  G R +E   L  ++    +  + + GKGDK R+V L   +V K     
Sbjct: 165 RDAAIIAVLYSTGCRRAEIAGLRLRDYDPAERGITVIGKGDKQRLVHLNAQAVAKVEAWL 224

Query: 209 AILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           A+    D   F  ++   ++ +  G+        +     R+LR+  G P ++  H LR 
Sbjct: 225 AVRGRGDGAMFSPISAAGRIRMRDGVPAGMSGQAIGHMLTRRLRQA-GAPQASP-HDLRR 282

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +F   LL  G DL + Q+I+GH   +TT  Y
Sbjct: 283 TFIGSLLDAGVDLATTQAIVGHASPATTARY 313


>gi|187778276|ref|ZP_02994749.1| hypothetical protein CLOSPO_01868 [Clostridium sporogenes ATCC
           15579]
 gi|187771901|gb|EDU35703.1| hypothetical protein CLOSPO_01868 [Clostridium sporogenes ATCC
           15579]
          Length = 358

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 36/173 (20%)

Query: 153 DARNSA---ILYLLYGCGLRISEALSLTPQNIMDDQSTL-------------------RI 190
           D +NS    I+ L   CGLR+ E L L  ++I +  +T+                   R+
Sbjct: 186 DFQNSKYYLIILLALKCGLRLGEILGLKWEDIDEVNNTITINKQWKQIDAGRSIYGYGRV 245

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +GK    R +P+       + +Y ++    +N+N ++  F+       N       +  L
Sbjct: 246 KGKNSN-RTIPISQLTLNELKKYKNI----VNINNRIFSFK-------NTDSVSICLNAL 293

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            +  G  +  T H LRH++AT L+S+G D +++  +LGH    T + Y++VN 
Sbjct: 294 LKKEGYDI--TIHELRHTYATKLISHGLDFKTVARLLGHTVEQTMRTYSHVND 344


>gi|153807728|ref|ZP_01960396.1| hypothetical protein BACCAC_02010 [Bacteroides caccae ATCC 43185]
 gi|160886150|ref|ZP_02067153.1| hypothetical protein BACOVA_04157 [Bacteroides ovatus ATCC 8483]
 gi|160889087|ref|ZP_02070090.1| hypothetical protein BACUNI_01508 [Bacteroides uniformis ATCC 8492]
 gi|149129337|gb|EDM20551.1| hypothetical protein BACCAC_02010 [Bacteroides caccae ATCC 43185]
 gi|156108035|gb|EDO09780.1| hypothetical protein BACOVA_04157 [Bacteroides ovatus ATCC 8483]
 gi|156861554|gb|EDO54985.1| hypothetical protein BACUNI_01508 [Bacteroides uniformis ATCC 8492]
          Length = 354

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 18/148 (12%)

Query: 163 LYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           L+ C   LRIS+ L+L  ++I+D  +       G K   V ++    KA     D+ P  
Sbjct: 206 LFSCMTSLRISDILALCWEDIVDYSA-------GGKC--VHIITQKNKA----EDIIPIS 252

Query: 221 ---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
              L L       +G+  K L     Q  +++  R  G+  + T H+ R +FAT   + G
Sbjct: 253 EEALGLIGYNSEKKGLVFKGLMRSWTQIPMKEWIRSAGITKNITFHSYRRTFATLQAAAG 312

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            D+R+IQSI+ H  ++TTQ Y  V   N
Sbjct: 313 TDIRTIQSIMAHKSITTTQRYIKVVDAN 340


>gi|150016222|ref|YP_001308476.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149902687|gb|ABR33520.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 325

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 72/150 (48%), Gaps = 6/150 (4%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           D R+ A +  L G G R +  L++  ++I    +  L    K  +   VPL  S++  + 
Sbjct: 148 DYRSFATVSFLVGAGCRSTTLLNVRVKDIDFKKEMILFAHMKTKRQVNVPLSKSLKLILK 207

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           +Y +     +NL  +  LF  + G  ++       +    ++  + +    +T R++FAT
Sbjct: 208 DYIE----TMNLKNEDILFPKLDGTKMSYDTLHENLVNYFKHCKVKMRG-VNTFRNTFAT 262

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             + NGGD+  ++ +LGH  + TT+ Y N+
Sbjct: 263 MFVRNGGDIYRLKLLLGHSNIKTTERYVNL 292


>gi|300727851|ref|ZP_07061231.1| phage integrase family protein [Prevotella bryantii B14]
 gi|299774899|gb|EFI71511.1| phage integrase family protein [Prevotella bryantii B14]
          Length = 405

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           P+F+G     LN  +    +R+      +    T H  RH+FA  +L+ G D+ ++  +L
Sbjct: 302 PVFKGF----LNGALLSLELRRWMLAASINKDITYHCSRHTFAVLMLNFGADIYTVSKML 357

Query: 288 GHFRLSTTQIYTNV 301
           GH  ++TTQIY  V
Sbjct: 358 GHREIATTQIYARV 371


>gi|291618731|ref|YP_003521473.1| Int [Pantoea ananatis LMG 20103]
 gi|291153761|gb|ADD78345.1| Int [Pantoea ananatis LMG 20103]
          Length = 348

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 67/173 (38%), Gaps = 34/173 (19%)

Query: 142 LLHTSHETKWIDARNSAILYLL--------------YGCGLRISEALSLTPQNIMDDQST 187
           L  T  E  W+D+   + L L+                 G R SEA +L    +  ++ T
Sbjct: 165 LTTTEREMAWLDSEQISSLLLVTESEPDLNRIVRVCLSTGARWSEAQNLRKSQLSPNKIT 224

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
                K  + R VP+     K   E   +   +L  +      R I+    N G+     
Sbjct: 225 F-TNTKSKRNRTVPITKDFYK---ELSSIKQENLFGDCHYNFLRAIK----NAGI----- 271

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                   LP     H LRHSF+ H + NGG++  +Q ILGH  +S T  Y +
Sbjct: 272 -------ELPKGQMTHVLRHSFSAHFMMNGGNILVLQKILGHHDISMTMRYAH 317


>gi|270055528|gb|ACZ59021.1| prophage LambdaSa2, site-specific recombinase, phage integrase
           family [Staphylococcus aureus]
          Length = 181

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 10/153 (6%)

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
           + ++RN  +  L   CGLRIS+ L+L   +I D +   R + K  K+  +PL   ++K I
Sbjct: 23  YGNSRNKFLFVLGINCGLRISDILNLKKSDIKDYKLRFR-ESKTKKLNTLPLY-HIQKDI 80

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
            EY       +NL     LFR  +  KP++     R + Q  + +GL  +   H+LR +F
Sbjct: 81  DEYI------VNLEDNDYLFRTKKENKPISRVQAYRILNQSAKSIGLD-NIGTHSLRKTF 133

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             H      D+  +  +  H   S T  Y  ++
Sbjct: 134 GYHYYKRTKDISLLMELFNHSSQSVTLRYIGIH 166


>gi|255975601|ref|ZP_05426187.1| phage integrase [Enterococcus faecalis T2]
 gi|307277808|ref|ZP_07558892.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|255968473|gb|EET99095.1| phage integrase [Enterococcus faecalis T2]
 gi|306505205|gb|EFM74391.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
          Length = 392

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 112/252 (44%), Gaps = 42/252 (16%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNI---------LNMRNLKKS-NSLPRALNEKQALT 136
           SL+  +  +     Y KK+ +  E+ +         L++++LK+S NSL     E + LT
Sbjct: 133 SLQSLVQVLNMVFNYCKKKNLINENPMKFVKMPKYQLSLKDLKESVNSL-----EDKFLT 187

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL------RI 190
            VD +    ++   + +   S + ++L+  G R+SEAL+L PQ+I  +++ +       +
Sbjct: 188 -VDELRAFLNYGIVYEELPMSVLFHVLFYTGCRVSEALALQPQDIDFERNEILFYKQTAV 246

Query: 191 QGKGDKIRI-----------VPLLPSVRKAILEYYD-LCPFDLNLNIQLP-------LFR 231
           +GK    RI           VP+ P V + + E  D L     N N  +        L  
Sbjct: 247 KGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRNSNFVVDETYLFVYLDP 306

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           G RG P        ++++     G+      H  RH+ A+ L++       ++  LGH  
Sbjct: 307 GKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMAS-LVAEYCSWDVLKDRLGHTD 365

Query: 292 LSTTQIYTNVNS 303
            +T++IY ++ S
Sbjct: 366 STTSKIYRHLTS 377


>gi|158340051|ref|YP_001521220.1| phage integrase / plasmid pRiA4b ORF-3-like protein [Acaryochloris
           marina MBIC11017]
 gi|158310292|gb|ABW31907.1| phage integrase / plasmid pRiA4b ORF-3-like protein [Acaryochloris
           marina MBIC11017]
          Length = 654

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 11/129 (8%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++ RSL+ ++SF K+L  R   T++  L +  LK    LP+  ++ +   L   +     
Sbjct: 103 TINRSLAALQSFFKWLTVRDYITKNPALLLEKLKSDPLLPQEFSQDEVDNLYQAICDRGF 162

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRI-QGKGDKIRIVPLLP 204
           H       R+ A+L+L+   GLR SE   L   N+ D D   + I + K D +  VPLL 
Sbjct: 163 HSF-----RDRALLHLI-DHGLRASEIQGL---NVGDYDGQRVHIREAKADSVGSVPLLS 213

Query: 205 SVRKAILEY 213
             R+A  +Y
Sbjct: 214 KARRAFDQY 222


>gi|282910462|ref|ZP_06318266.1| integrase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282325854|gb|EFB56162.1| integrase [Staphylococcus aureus subsp. aureus WBG10049]
          Length = 406

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 30/171 (17%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGK---------GDKIRIVPLLPS------------ 205
           G+RI E L++  ++I  D  +L I G          G  ++      S            
Sbjct: 230 GMRIGEMLAIKNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSC 289

Query: 206 --VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
             ++KAILE      ++   LN N    +F   +G P+    F + +R+  + +G+    
Sbjct: 290 EILKKAILENKKDSKWNDGYLNRNF---VFTNHKGNPMQTERFNKILRESAKDVGIEKEI 346

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           ++H LRHS  + L   G  L++I   +GH    TT  IY++V  +   D M
Sbjct: 347 SSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMM 397


>gi|254883690|ref|ZP_05256400.1| transposase [Bacteroides sp. 4_3_47FAA]
 gi|254836483|gb|EET16792.1| transposase [Bacteroides sp. 4_3_47FAA]
          Length = 287

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 20/150 (13%)

Query: 162 LLYGC--GLRISEALSLTPQNIM-DDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYD 215
            L+ C  G   ++A+S+T +N+  DD+ +L ++    K D +  V LLP     I +Y +
Sbjct: 131 FLFACYTGTAYADAVSITQENLFRDDEGSLWLKYRRKKTDYLGRVKLLPEALMLIKKYRE 190

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
                   + +  LF      P +    +  ++ LR   GL      H  RHSFA+ + L
Sbjct: 191 --------DTRATLF-----PPQDYHTLRANMKSLRLMAGLSQDLVYHMGRHSFASLVTL 237

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             G  + +I  +LG+  + TTQIY  V  K
Sbjct: 238 EEGVPIETISKMLGYSNIKTTQIYARVTPK 267


>gi|167758739|ref|ZP_02430866.1| hypothetical protein CLOSCI_01081 [Clostridium scindens ATCC 35704]
 gi|167663479|gb|EDS07609.1| hypothetical protein CLOSCI_01081 [Clostridium scindens ATCC 35704]
          Length = 242

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 89/194 (45%), Gaps = 22/194 (11%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY--TEIRAFISK-RRTQKIGDRSL 88
           S  TL+SYE     ++ FL   TE+K+    +    +  T I  ++   R  +    +S 
Sbjct: 30  SGHTLRSYEDALVLYMKFLE--TEKKVCGGDLGGSCFRRTVIEEWLEWLRNIRNCSPQSC 87

Query: 89  KRSLSGIKSFLKYLKKRKIT------TESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
              L+ I++FLKY+  R ++        + I  M+ ++K     R ++ + A       L
Sbjct: 88  NSRLASIRTFLKYMGSRDVSLLVLCHEAAGIPRMKCVRKQV---RGMSREAA-----QAL 139

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ--NIMDDQSTLRIQGKGDKIRIV 200
           +     +K    R+ A++ LLY    R+ E L +     ++  ++    I GKGDK+R +
Sbjct: 140 MEAPDASKRTGRRDMALIILLYSTAARLDEVLGMKNGQLHLAAEKPYATITGKGDKVRTL 199

Query: 201 PLLPSVRKAILEYY 214
            LLP V  A LE Y
Sbjct: 200 YLLPKV-VAHLERY 212


>gi|307314516|ref|ZP_07594119.1| integrase family protein [Escherichia coli W]
 gi|306905939|gb|EFN36461.1| integrase family protein [Escherichia coli W]
 gi|315060085|gb|ADT74412.1| integrase family protein [Escherichia coli W]
 gi|323379357|gb|ADX51625.1| integrase family protein [Escherichia coli KO11]
          Length = 350

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 28/186 (15%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--------TKWIDARNSAILYLLYGCGLRISEALS 175
           S P  L   +  T+ +  +   +HE         K  D   + ++ +    G R  EA++
Sbjct: 154 SYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICLSTGARWREAVN 213

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           LT   +   + T  ++ KG K R +P+   + + I+    L  F+   +           
Sbjct: 214 LTRSQVTKYRITF-VRTKGKKNRSIPISKELYEEIMA---LDGFNFFTDC---------- 259

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  FQ      +  + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T
Sbjct: 260 ------YFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMT 313

Query: 296 QIYTNV 301
             Y ++
Sbjct: 314 MRYAHL 319


>gi|209395650|ref|YP_002268540.1| resolvase [Escherichia coli O157:H7 str. EC4115]
 gi|209162421|gb|ACI39853.1| resolvase [Escherichia coli O157:H7 str. EC4115]
          Length = 271

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +  T HT RHS+A HL  +G   R +QS+LGH    +T+IYT V S
Sbjct: 198 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFS 243


>gi|327390069|gb|EGE88413.1| phage integrase family protein [Streptococcus pneumoniae GA04375]
          Length = 177

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 10/154 (6%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI-LEY 213
           R+ AI+ LL   G+R+ E + L   +I  +     + GKG K R  P+    R  I L  
Sbjct: 21  RDLAIIDLLASTGMRVGELVQLNRSDIDFENRECVVFGKGKKER--PVYFDARTKIHLRN 78

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGV--FQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           Y     +   +    LF  + GK    G+   +  +R+L   LG+      H  R + AT
Sbjct: 79  Y----LNDRKDSHPALFVTLVGKAQRLGIAGVEIRLRKLGDKLGIQ-KVHPHKFRRTLAT 133

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             +  G  +  +Q +LGH ++ TT  Y  VN  N
Sbjct: 134 KAIDKGMPIEQVQKLLGHSKIDTTLAYAMVNQNN 167


>gi|283777783|ref|YP_003368481.1| resolvase [Citrobacter rodentium ICC168]
 gi|282952071|emb|CBG91801.1| resolvase [Citrobacter rodentium ICC168]
          Length = 263

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 30/44 (68%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T HT RHS+A H+L  G  L+ +Q+++GH  +S+T+ YT V
Sbjct: 192 VPVTPHTFRHSYAMHMLYAGIPLKVLQALMGHKSVSSTEAYTKV 235


>gi|109302897|ref|YP_654712.1| Int [Pasteurella phage F108]
 gi|73918061|gb|AAZ93639.1| Int [Pasteurella phage F108]
          Length = 340

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 23/143 (16%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I  +    G R SEA  L    ++  + T  I  K  K R +P+ P       E Y++  
Sbjct: 198 ITRICLATGARWSEAEQLKQAQVIPYKITY-INTKSGKNRTIPISP-------ELYNM-- 247

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNG 277
                   LP  RG     L    ++ +   + R  + LP     H LRH+FA+H + NG
Sbjct: 248 --------LPQRRGR----LFGDAYEAFENAVDRAGIDLPKGQLTHVLRHTFASHFMMNG 295

Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300
           G++  ++ ILGH  +  T  Y +
Sbjct: 296 GNILVLKEILGHSTIEMTMKYAH 318


>gi|291546700|emb|CBL19808.1| Site-specific recombinase XerC [Ruminococcus sp. SR1/5]
          Length = 380

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 11/104 (10%)

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G  +RI+P+   + K       LC      +++  +  G  G  L P   Q  +RQ  + 
Sbjct: 255 GRSVRIIPMNQDIEK-------LCNKWRADDLEAYVLTGKAGYFLEPRTLQYRMRQYTKD 307

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
             L  +   HTLRHSFAT  +  G ++RS+  ILGH   S+T+I
Sbjct: 308 CNLK-NVHFHTLRHSFATRCVEAGFEIRSLSEILGH---SSTRI 347


>gi|281423084|ref|ZP_06253997.1| integrase [Prevotella oris F0302]
 gi|281402797|gb|EFB33628.1| integrase [Prevotella oris F0302]
          Length = 400

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 20/156 (12%)

Query: 162 LLYGC--GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVRKAILEYYD 215
            ++ C  GL   +   L P +I    DD+  +RI  K  K+   +PL P + + IL+ Y+
Sbjct: 246 FIFSCFTGLAYVDTQLLYPHHIGRTADDRRYIRINRKKTKVESFIPLHP-IAEQILDLYN 304

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY-IRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                   +   P+F      PL       + I +L   +G   + + H  RHSF + L+
Sbjct: 305 ------TTDDTQPVF------PLPSRDMMWFEIHELGVIIGRKENLSYHQARHSFGSFLI 352

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           S G    SI  ++GH  +++TQ Y  ++ K   + M
Sbjct: 353 SEGICTESIAKMMGHASITSTQTYAKISEKKIAEDM 388


>gi|94442238|dbj|BAE93618.1| integron integrase [uncultured bacterium]
          Length = 211

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 84/192 (43%), Gaps = 48/192 (25%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K+   LP  L + +  TL++N           +   N  I  LLYG G+R  E L L   
Sbjct: 31  KQPRHLPVVLTQAEVGTLLEN-----------MKGVNGLIARLLYGTGMRKMECLRLRIM 79

Query: 180 NIMDDQSTLRIQ-GKG--DKIRIVP--LLPSVRKAILEYYDLCPFDLNLN---IQLPLF- 230
           ++  D S + ++ GKG  D+I ++P  L+ S+R  +     L  +D++     ++LP   
Sbjct: 80  DVDFDYSQIHVRSGKGGKDRIALLPDCLVASLRSQLEHTEKLHKYDIDEGYGEVELPFAL 139

Query: 231 --------RGIRGKPLNP----------GVFQRY----------IRQLRRYLGLPLSTTA 262
                   R  + + + P          GV +R+          IRQ   +  +    + 
Sbjct: 140 ERKYPNAGREWKWQYVFPSTKRSVDKRTGVIRRHHWHDTNVSRAIRQSVCFSRISKHVSV 199

Query: 263 HTLRHSFATHLL 274
           HTLRH+FATHLL
Sbjct: 200 HTLRHTFATHLL 211


>gi|301022658|ref|ZP_07186514.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 69-1]
 gi|300397408|gb|EFJ80946.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 69-1]
          Length = 299

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +  T HT RHS+A HL  +G   R +QS+LGH    +T+IYT V S
Sbjct: 223 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFS 268


>gi|289808612|ref|ZP_06539241.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 55

 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           R  + LP     H LRH+FA+H + NGG++  ++ ILGH  +  T +Y +
Sbjct: 2   RAGIELPEGQCTHVLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAH 51


>gi|260893825|ref|YP_003239922.1| integrase family protein [Ammonifex degensii KC4]
 gi|260865966|gb|ACX53072.1| integrase family protein [Ammonifex degensii KC4]
          Length = 315

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 7/154 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI---VPLLPSVRKAIL 211
           R+ A++      G+R  EAL L P++       + I  +  K R    V + P   +A+ 
Sbjct: 140 RDYALILFQLDTGVRPGEALKLLPEHFNLRSLEVYIPAQVSKTRAARTVVISPQTARAVQ 199

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
               + P       + P+F    G+P+    +   +  + R  G+    T + LRH+ AT
Sbjct: 200 RLLAVRP--AAWGSKAPVFCSETGQPMQVSSWTHRLALISRRAGV--KVTPYQLRHTAAT 255

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            LL  G    ++   LGH  LSTT+ Y  +  ++
Sbjct: 256 ELLRGGASAFAVARQLGHLHLSTTRRYIQLVEED 289


>gi|312438754|gb|ADQ77825.1| prophage L54a integrase [Staphylococcus aureus subsp. aureus TCH60]
          Length = 414

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 30/171 (17%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGK---------GDKIRIVPLLPS------------ 205
           G+RI E L++  ++I  D  +L I G          G  ++      S            
Sbjct: 238 GMRIGEMLAIKNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSC 297

Query: 206 --VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
             ++KAILE      ++   LN N    +F   +G P+    F + +R+  + +G+    
Sbjct: 298 EILKKAILENKKDSKWNDGYLNRNF---VFTNHKGNPMQTERFNKILRESAKDVGIEKEI 354

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           ++H LRHS  + L   G  L++I   +GH    TT  IY++V  +   D M
Sbjct: 355 SSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMM 405


>gi|255690817|ref|ZP_05414492.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
 gi|260623621|gb|EEX46492.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
          Length = 385

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           G+  + + HT RH+FAT  L+ GGDL ++  +LGH  + +TQ+Y +V
Sbjct: 321 GIEKNVSYHTSRHTFATLSLAAGGDLYTVGKLLGHTNILSTQVYADV 367


>gi|225420366|ref|ZP_03762669.1| hypothetical protein CLOSTASPAR_06711 [Clostridium asparagiforme
           DSM 15981]
 gi|225040985|gb|EEG51231.1| hypothetical protein CLOSTASPAR_06711 [Clostridium asparagiforme
           DSM 15981]
          Length = 285

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 8/141 (5%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +++ L   G RISE L +  ++I      + +  KG K+R V    ++ +  L++ +   
Sbjct: 134 VVHFLGSTGARISELLQIKAEHIR--MGYMDLYSKGGKVRRVYFPEALCRDALDWLETRG 191

Query: 219 FDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
                     +F    G P    G+  +     RRY   P +   H+ RH FA + LS  
Sbjct: 192 LQTGF-----VFTNRNGAPFTARGISSQLKVLARRYRINPDTVYPHSFRHRFAKNFLSRF 246

Query: 278 GDLRSIQSILGHFRLSTTQIY 298
            D+  +  ++GH  + TT+IY
Sbjct: 247 NDIALLADLMGHDSIETTRIY 267


>gi|323974160|gb|EGB69293.1| phage integrase [Escherichia coli TW10509]
          Length = 274

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +  T HT RHS+A HL  +G   R +QS+LGH    +T+IYT V S
Sbjct: 198 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFS 243


>gi|265753741|ref|ZP_06089096.1| integrase [Bacteroides sp. 3_1_33FAA]
 gi|263235455|gb|EEZ20979.1| integrase [Bacteroides sp. 3_1_33FAA]
          Length = 412

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 69/162 (42%), Gaps = 45/162 (27%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           A L+  Y CGLR S+   LT +N++       I G+                  E+  L 
Sbjct: 239 AFLFCCY-CGLRFSDFKQLTYKNLIT------IDGR------------------EWLVLN 273

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRY------------------IRQLRRYLGLPLS 259
                + + +PL+    GK L  G+ ++Y                  +++L R   +   
Sbjct: 274 SIKTGVKLNIPLYLLFNGKAL--GIMRKYDSIEQLAALGCNSDTNRTLQKLGRMARIGKK 331

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RH+ AT L+  G  + ++Q +LGH  + TT+IY+ V
Sbjct: 332 FTYHTSRHTCATLLVHQGVPITTVQKLLGHTSVKTTEIYSEV 373


>gi|210621315|ref|ZP_03292585.1| hypothetical protein CLOHIR_00528 [Clostridium hiranonis DSM 13275]
 gi|210154825|gb|EEA85831.1| hypothetical protein CLOHIR_00528 [Clostridium hiranonis DSM 13275]
          Length = 320

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 123/290 (42%), Gaps = 39/290 (13%)

Query: 45  QFLIFLAFYTEEKIT----IQTIRQLSYTEIRAFISK---RRTQKIGD---------RSL 88
            +L+  A +T  KIT    ++   +L   +I  F+ +   R  ++IG+         R+L
Sbjct: 29  HYLVETAEHTSAKITHDITLEEFSELKARDINLFLGEYCSRYYKEIGNTTMVFENNNRAL 88

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE---KQALTLVDNVL--- 142
            R  S + +  K+L + +   E+       +K     P A+      +   ++D V    
Sbjct: 89  ARKKSSLSTLFKFLYRNEQLKENITDGFNPIKLPKPQPDAIKRLEIDEVAVMLDAVETGE 148

Query: 143 -LHTSHETKW--IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            L    +  W     R+ AIL L    GLR++E   L   +    +    I  K  K  +
Sbjct: 149 GLTEKEKVYWKKTKLRDKAILALFVTYGLRLNELRELNISSFNFSRGEFTIFRKRGKEVL 208

Query: 200 VPLLPSVRKAILEYYDL---CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRYLG 255
           +P+  +    +L+Y +       D+    +  LF  ++ K +     +R I  L ++Y  
Sbjct: 209 MPINKTCEHVVLDYINHERPHSEDIPEEHRDALFLSLQKKRMT----ERAITSLVKKYTS 264

Query: 256 LPLSTT------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           + + TT       H LR + AT L+ NG  +  +Q++L H  ++TTQ+Y 
Sbjct: 265 ISMCTTRDKGYSPHKLRATAATSLIQNGFTIYDVQNLLDHDNVTTTQLYA 314


>gi|187730006|ref|YP_001878775.1| resolvase [Shigella boydii CDC 3083-94]
 gi|187426750|gb|ACD06027.1| resolvase [Shigella boydii CDC 3083-94]
          Length = 299

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +  T HT RHS+A HL  +G   R +QS+LGH    +T+IYT V S
Sbjct: 223 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFS 268


>gi|168758775|ref|ZP_02783782.1| resolvase [Escherichia coli O157:H7 str. EC4401]
 gi|168771432|ref|ZP_02796439.1| resolvase [Escherichia coli O157:H7 str. EC4486]
 gi|189354463|gb|EDU72882.1| resolvase [Escherichia coli O157:H7 str. EC4401]
 gi|189359798|gb|EDU78217.1| resolvase [Escherichia coli O157:H7 str. EC4486]
          Length = 271

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +  T HT RHS+A HL  +G   R +QS+LGH    +T+IYT V S
Sbjct: 198 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFS 243


>gi|304382758|ref|ZP_07365242.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
 gi|325856130|ref|ZP_08171982.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|327313879|ref|YP_004329316.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|304336077|gb|EFM02323.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
 gi|325483687|gb|EGC86653.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|326945764|gb|AEA21649.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 422

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 75/164 (45%), Gaps = 26/164 (15%)

Query: 167 GLRISEALSLTPQNIM---DDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY--DLCPFD 220
           GL   +   L P++I+   D  + +RI+  K D   I+PLLP + K IL  Y  D    D
Sbjct: 257 GLARVDMQRLKPKHIIYNADGTAEIRIKRQKTDVEAIIPLLP-IAKQILSLYIKDKKADD 315

Query: 221 L---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSN 276
           L   NL I     R      +N G   R  + L          T H  RH+F+T + LSN
Sbjct: 316 LIFPNLTI-----RKASLACVNIGQICRIEKGL----------TFHMARHTFSTTICLSN 360

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           G  + ++  +LGH  + TTQIY  +      + M  + D+ H +
Sbjct: 361 GISMETLSKMLGHSNIGTTQIYGKITDHKIQEDMTALTDREHSA 404


>gi|237710855|ref|ZP_04541336.1| transposase [Bacteroides sp. 9_1_42FAA]
 gi|237725667|ref|ZP_04556148.1| transposase [Bacteroides sp. D4]
 gi|298385294|ref|ZP_06994853.1| integrase [Bacteroides sp. 1_1_14]
 gi|317474053|ref|ZP_07933332.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|229435475|gb|EEO45552.1| transposase [Bacteroides dorei 5_1_36/D4]
 gi|229454699|gb|EEO60420.1| transposase [Bacteroides sp. 9_1_42FAA]
 gi|298262438|gb|EFI05303.1| integrase [Bacteroides sp. 1_1_14]
 gi|316909895|gb|EFV31570.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 409

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 112/257 (43%), Gaps = 45/257 (17%)

Query: 61  QTIRQL-SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           Q IR+  SY E++   S        +++ +  L+ +K   +   K   +   + L+ +  
Sbjct: 165 QFIREYQSYIEVKCGYS--------NQTSRHHLALLKRICRIAYKEGFSERYHFLHFKIP 216

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL---YLLYGC--GLRISEAL 174
           K+  + P+AL+ +    L D          +  + R S +L     L+ C  G   ++ +
Sbjct: 217 KQKETTPKALSREDFEKLRD---------LEIPEKRRSLVLTRDLFLFACYAGTAYADTI 267

Query: 175 SLTPQNIM-DDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLP-- 228
           S+T +N+  DD+ +L ++ +  K  +   V LLP     I +Y D    DL   +  P  
Sbjct: 268 SITRENLFTDDEGSLWLKYRRKKNELTARVKLLPEAIALIEKYRD----DLRETL-FPNQ 322

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSIL 287
           L+  +R            ++ LR   GL      H  RHSFA+ + L  G  + +I  +L
Sbjct: 323 LYSTLRAN----------MKILRVLAGLTTELVYHMGRHSFASLVTLEEGVPIETISKML 372

Query: 288 GHFRLSTTQIYTNVNSK 304
           GH  + TTQIY  V  K
Sbjct: 373 GHNNIKTTQIYARVTPK 389


>gi|82523915|emb|CAI78637.1| integrase/recombinase [uncultured delta proteobacterium]
          Length = 279

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 109/257 (42%), Gaps = 30/257 (11%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           +++ ++S  E+  F+    T+ +   + +   + IK+F  ++  R+       LNMRN  
Sbjct: 40  RSLEEISSDEVFQFLEDV-TKNLSKSTRRLRYAQIKAFYNFIIDRRS------LNMRNPC 92

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA---RNSAILYLLYGCGLRISEALSLT 177
            ++ L +A   K        +L   + E     A   R+  IL L   CGLRI E L + 
Sbjct: 93  NTSLLAKAF--KAPKNSPRKILDRETVEEMIYKAKRHRDRLILELQAKCGLRIGELLKIR 150

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
             +I D   TLR    G +     +  +V + + EY           IQ    +G   + 
Sbjct: 151 VSDIPDRTITLREPKSGKEAEKAYMPENVSRKLSEY-----------IQGSTIKG--AER 197

Query: 238 LNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSI-QSILGHFRLST 294
           + P  +    R L R LG  L ++ T H LR   AT+   NG  L  + + IL H  L T
Sbjct: 198 IFPICYST-ARSLIRGLGAKLNVNVTPHDLRRYSATYASRNGVPLEVVSKVILRHQDLKT 256

Query: 295 TQIY-TNVNSKNGGDWM 310
           TQ+Y   V+      WM
Sbjct: 257 TQVYLGKVSDSEAIRWM 273


>gi|16762232|ref|NP_457849.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29143721|ref|NP_807063.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|25301804|pir||AI0924 probable bacteriophage integrase [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16504536|emb|CAD09419.1| probable bacteriophage integrase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139356|gb|AAO70923.1| probable bacteriophage integrase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 350

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 28/186 (15%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--------TKWIDARNSAILYLLYGCGLRISEALS 175
           S P  L   +  T+ +  +   +HE         K  D   + ++ +    G R  EA++
Sbjct: 154 SYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICLSTGARWREAVN 213

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           LT   +   + T  ++ KG K R +P+   + + I+    L  F+   +           
Sbjct: 214 LTRSQVTKYRITF-VRTKGKKNRSIPISKELYEEIMA---LDGFNFFTDC---------- 259

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  FQ      +  + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T
Sbjct: 260 ------YFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMT 313

Query: 296 QIYTNV 301
             Y ++
Sbjct: 314 MRYAHL 319


>gi|331648027|ref|ZP_08349117.1| type 1 fimbriae regulatory protein FimB [Escherichia coli M605]
 gi|330912163|gb|EGH40673.1| type 1 fimbriae regulatory protein FimB [Escherichia coli AA86]
 gi|331042887|gb|EGI15027.1| type 1 fimbriae regulatory protein FimB [Escherichia coli M605]
          Length = 130

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 35/75 (46%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LF    GKPL+   F   +    +  GL +    H LRH+    L  NG D R IQ  LG
Sbjct: 25  LFVSRTGKPLSRQRFYNIVSAAGKNAGLNIKVHPHMLRHACGYSLADNGVDTRLIQDYLG 84

Query: 289 HFRLSTTQIYTNVNS 303
           H  +  T IYT  NS
Sbjct: 85  HRNIRHTVIYTASNS 99


>gi|294783281|ref|ZP_06748605.1| integrase/recombinase, phage integrase family [Fusobacterium sp.
           1_1_41FAA]
 gi|294480159|gb|EFG27936.1| integrase/recombinase, phage integrase family [Fusobacterium sp.
           1_1_41FAA]
          Length = 346

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 72/152 (47%), Gaps = 8/152 (5%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY---- 213
           A++ +L    +R +E  ++  ++I  +++ ++I  KG+K  +  +      AI +Y    
Sbjct: 182 AMMEVLISSAVRATELANIKIRDIDFEKNEIKIIRKGNKEGVAFMSTIAALAIKKYISER 241

Query: 214 --YDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
             Y+     +   +    ++  I G  +    F+R ++ +     +  +   H  R +FA
Sbjct: 242 GNYNTPYLWIVDGLMYKCYKNQILGSKIETEGFRRVLKSIATRAKVE-NVHPHRFRRTFA 300

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           T  L  G D+  IQ +LGH  ++TT IY NV+
Sbjct: 301 TMALKKGMDVEEIQQVLGHQNINTTMIYVNVD 332


>gi|218507319|ref|ZP_03505197.1| site-specific tyrosine recombinase XerC [Rhizobium etli Brasil 5]
          Length = 53

 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/47 (55%), Positives = 30/47 (63%)

Query: 4  NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL 50
          N L  I    L+ ER  WL+NL  ER LS+ TL +YE DTRQFL FL
Sbjct: 2  NELLVIADPRLMAERAAWLENLARERRLSEHTLDAYERDTRQFLTFL 48


>gi|213051670|ref|ZP_03344548.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213425642|ref|ZP_03358392.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213580194|ref|ZP_03362020.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213646693|ref|ZP_03376746.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 326

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 28/186 (15%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--------TKWIDARNSAILYLLYGCGLRISEALS 175
           S P  L   +  T+ +  +   +HE         K  D   + ++ +    G R  EA++
Sbjct: 130 SYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICLSTGARWREAVN 189

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           LT   +   + T  ++ KG K R +P+   + + I+    L  F+               
Sbjct: 190 LTRSQVTKYRITF-VRTKGKKNRSIPISKELYEEIMA---LDGFNF-------------- 231

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  FQ      +  + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T
Sbjct: 232 --FTDCYFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMT 289

Query: 296 QIYTNV 301
             Y ++
Sbjct: 290 MRYAHL 295


>gi|300916302|ref|ZP_07133049.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 115-1]
 gi|300416391|gb|EFJ99701.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 115-1]
          Length = 376

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 28/186 (15%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--------TKWIDARNSAILYLLYGCGLRISEALS 175
           S P  L   +  T+ +  +   +HE         K  D   + ++ +    G R  EA++
Sbjct: 180 SYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICLSTGARWREAVN 239

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           LT   +   + T  ++ KG K R +P+   + + I+    L  F+   +           
Sbjct: 240 LTRSQVTKYRITF-VRTKGKKNRSIPISKELYEEIMA---LDGFNFFTDY---------- 285

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  FQ      +  + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T
Sbjct: 286 ------YFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMT 339

Query: 296 QIYTNV 301
             Y ++
Sbjct: 340 MRYAHL 345


>gi|218454968|ref|YP_002381191.1| putative resolvase (Protein D) [Escherichia coli UMN026]
 gi|218350109|emb|CAQ87527.1| putative resolvase (Protein D) [Escherichia coli UMN026]
          Length = 296

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +  T HT RHS+A HL  +G   R +QS+LGH    +T+IYT V S
Sbjct: 223 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFS 268


>gi|148550554|ref|YP_001259993.1| phage integrase family protein [Sphingomonas wittichii RW1]
 gi|148502973|gb|ABQ71226.1| phage integrase family protein [Sphingomonas wittichii RW1]
          Length = 304

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 98/223 (43%), Gaps = 18/223 (8%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR--ALNEKQALTLVDNVLLH 144
           S+K+ L+G++    +L    I   +   ++R    S    +   L   +A  L+D + + 
Sbjct: 72  SVKQQLAGVRHLFDWLVTGHIVPVNPAGSVRGPAHSQRRGKTPVLAPDEARRLLDTIDVT 131

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL--RIQGKGDKIRIVPL 202
           T         R+ A++ L+     RI  AL++  +++      L  R+  KG K   +P 
Sbjct: 132 TP-----AGLRDRALIGLMVYSFARIGAALAMRVEDVFVQNRRLWVRLHEKGGKRHEMPC 186

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RG-KPLN--PGVFQRYIRQLRRYLGLPL 258
             ++   + EY D C  +L  + + PLFR I RG K L+  P         +RR  G   
Sbjct: 187 HHNLEHYLAEYLDGC--ELREDRKGPLFRTIARGTKRLSDTPLPQANAFAMVRRRAGAAE 244

Query: 259 STTA---HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             TA   H+ R +  T  L NGG L +  ++  H    TTQ+Y
Sbjct: 245 IGTAIGNHSFRATGITTYLKNGGTLETAATMANHSSTRTTQLY 287


>gi|306816761|ref|ZP_07450886.1| putative resolvase (Protein D) [Escherichia coli NC101]
 gi|305849888|gb|EFM50350.1| putative resolvase (Protein D) [Escherichia coli NC101]
          Length = 298

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +  T HT RHS+A HL  +G   R +QS+LGH    +T+IYT V S
Sbjct: 222 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFS 267


>gi|227892126|ref|ZP_04009931.1| integrase family protein [Lactobacillus salivarius ATCC 11741]
 gi|227866058|gb|EEJ73479.1| integrase family protein [Lactobacillus salivarius ATCC 11741]
          Length = 308

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 16/163 (9%)

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-KIRIVP 201
           L+ S E  W        +YL+   GLR +EAL+LTP +   +   + I    + K +   
Sbjct: 128 LNLSSEVNW-----DWFIYLISKTGLRFAEALALTPADFDYENQQININKSWNYKFKDYG 182

Query: 202 LLP-----SVRKAILEYYDLCPFDLNL---NIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
             P     S RK  ++   L  F   +   +   P+F     K  N  V  R +  L R+
Sbjct: 183 FQPTKNKSSNRKIFVDNSTLKAFKKLIKEKDPDQPIFVNQDQKIFNSTVNSR-LATLCRH 241

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
             +P + + H LRH+ A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 242 ANIP-TISIHGLRHTHASLLLFQGVSVLSVSRRLGHANITTTQ 283


>gi|170020796|ref|YP_001725750.1| integrase family protein [Escherichia coli ATCC 8739]
 gi|169755724|gb|ACA78423.1| integrase family protein [Escherichia coli ATCC 8739]
          Length = 350

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 28/186 (15%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--------TKWIDARNSAILYLLYGCGLRISEALS 175
           S P  L   +  T+ +  +   +HE         K  D   + ++ +    G R  EA++
Sbjct: 154 SYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICLSTGARWREAVN 213

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           LT   +   + T  ++ KG K R +P+   + + I+    L  F+   +           
Sbjct: 214 LTRSQVTKYRITF-VRTKGKKNRSIPISKELYEEIMA---LDGFNFFTDC---------- 259

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  FQ      +  + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T
Sbjct: 260 ------YFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMT 313

Query: 296 QIYTNV 301
             Y ++
Sbjct: 314 MRYAHL 319


>gi|186474497|ref|YP_001863468.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198456|gb|ACC76418.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 318

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 91/223 (40%), Gaps = 21/223 (9%)

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL---HTSHETKW 151
           ++ F +YL++    TE     M        +P   ++++    VD +L+   H S     
Sbjct: 75  LRPFTRYLQQYAPGTEVPPPRMLGSTHHRPVPHIYSDEE----VDALLIAARHLSPRGGL 130

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAI 210
             A    +  LL   G+RISEAL L   ++M +Q  LR++  K  K R++PL  +   A+
Sbjct: 131 RPATYETLFGLLAATGMRISEALRLERSDVMLEQGMLRVRNSKFKKSRLIPLHATTVAAL 190

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-----STTAHTL 265
             Y       L L      F    G  L     +     LRR LG        +   H L
Sbjct: 191 QRYEHARDQFLPLATDDNFFLSGWGCALKIWNAEDAFSTLRRRLGWVARGDHSAPRIHDL 250

Query: 266 RHSFATHLL--------SNGGDLRSIQSILGHFRLSTTQIYTN 300
           RH+F ++ L             + ++ + +GH R++ T  Y N
Sbjct: 251 RHTFISNCLLRWYRRQIKVDNAIAALSTYVGHVRVTDTYWYIN 293


>gi|332826664|gb|EGJ99490.1| hypothetical protein HMPREF9455_04142 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 447

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 14/99 (14%)

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA----------HTLRHSFATH 272
           L I L +    R +  +  +FQ Y R    Y+G  L   A          HT RH+F TH
Sbjct: 308 LEIPLKIMEKYRPEKKDKHIFQVYGRG---YMGKLLREIAKKCAIGHISFHTARHNFGTH 364

Query: 273 L-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           + LS G  + ++  ++GH  ++TTQIY  V  K   + M
Sbjct: 365 ITLSQGVPIETVSRMMGHKNIATTQIYAKVTDKKVDEDM 403


>gi|29376385|ref|NP_815539.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|227553657|ref|ZP_03983706.1| bacteriophage integrase [Enterococcus faecalis HH22]
 gi|256619313|ref|ZP_05476159.1| phage integrase [Enterococcus faecalis ATCC 4200]
 gi|256961658|ref|ZP_05565829.1| phage integrase [Enterococcus faecalis Merz96]
 gi|256964874|ref|ZP_05569045.1| phage integrase [Enterococcus faecalis HIP11704]
 gi|257090143|ref|ZP_05584504.1| phage integrase [Enterococcus faecalis CH188]
 gi|293383362|ref|ZP_06629275.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis R712]
 gi|293388986|ref|ZP_06633471.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis S613]
 gi|294614272|ref|ZP_06694191.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1636]
 gi|307272962|ref|ZP_07554209.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0855]
 gi|307275714|ref|ZP_07556854.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|312903582|ref|ZP_07762762.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|312907810|ref|ZP_07766801.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|312910429|ref|ZP_07769276.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|29343848|gb|AAO81609.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
 gi|227177214|gb|EEI58186.1| bacteriophage integrase [Enterococcus faecalis HH22]
 gi|256598840|gb|EEU18016.1| phage integrase [Enterococcus faecalis ATCC 4200]
 gi|256952154|gb|EEU68786.1| phage integrase [Enterococcus faecalis Merz96]
 gi|256955370|gb|EEU72002.1| phage integrase [Enterococcus faecalis HIP11704]
 gi|256998955|gb|EEU85475.1| phage integrase [Enterococcus faecalis CH188]
 gi|291079153|gb|EFE16517.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis R712]
 gi|291081767|gb|EFE18730.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis S613]
 gi|291592931|gb|EFF24521.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1636]
 gi|306507590|gb|EFM76720.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|306510576|gb|EFM79599.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0855]
 gi|310626838|gb|EFQ10121.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|310633458|gb|EFQ16741.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|311289702|gb|EFQ68258.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|315032050|gb|EFT43982.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0017]
 gi|315162894|gb|EFU06911.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0645]
 gi|315575946|gb|EFU88137.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309B]
 gi|315577866|gb|EFU90057.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0630]
 gi|315580736|gb|EFU92927.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309A]
          Length = 392

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 112/252 (44%), Gaps = 42/252 (16%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNI---------LNMRNLKKS-NSLPRALNEKQALT 136
           SL+  +  +     Y KK+ +  E+ +         L++++LK+S NSL     E + LT
Sbjct: 133 SLQSLVQVLNMVFNYCKKKNLINENPMKFVKMPKYQLSLKDLKESVNSL-----EDKFLT 187

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL------RI 190
            VD +    ++   + +   S + ++L+  G R+SEAL+L PQ+I  +++ +       +
Sbjct: 188 -VDELRAFLNYGIVYEELPMSVLFHVLFYTGCRVSEALALQPQDIDFERNEILFYKQTAV 246

Query: 191 QGKGDKIRI-----------VPLLPSVRKAILEYYD-LCPFDLNLNIQLP-------LFR 231
           +GK    RI           VP+ P V + + E  D L     N N  +        L  
Sbjct: 247 KGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRNSNFVVDETYLFVYLDP 306

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           G RG P        ++++     G+      H  RH+ A+ L++       ++  LGH  
Sbjct: 307 GKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMAS-LVAEYCSWDVLKDRLGHTD 365

Query: 292 LSTTQIYTNVNS 303
            +T++IY ++ S
Sbjct: 366 STTSKIYRHLTS 377


>gi|15804888|ref|NP_290929.1| tyrosine recombinase [Escherichia coli O157:H7 EDL933]
 gi|15834526|ref|NP_313299.1| tyrosine recombinase [Escherichia coli O157:H7 str. Sakai]
 gi|82546660|ref|YP_410607.1| tyrosine recombinase [Shigella boydii Sb227]
 gi|168749531|ref|ZP_02774553.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4113]
 gi|168754879|ref|ZP_02779886.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4401]
 gi|168760554|ref|ZP_02785561.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4501]
 gi|168766588|ref|ZP_02791595.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4486]
 gi|168773982|ref|ZP_02798989.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4196]
 gi|168782824|ref|ZP_02807831.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4076]
 gi|168784950|ref|ZP_02809957.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC869]
 gi|168797879|ref|ZP_02822886.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC508]
 gi|195937321|ref|ZP_03082703.1| tyrosine recombinase [Escherichia coli O157:H7 str. EC4024]
 gi|208805717|ref|ZP_03248054.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4206]
 gi|208813764|ref|ZP_03255093.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4045]
 gi|208821532|ref|ZP_03261852.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4042]
 gi|209398596|ref|YP_002273838.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4115]
 gi|217326621|ref|ZP_03442705.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. TW14588]
 gi|254796315|ref|YP_003081152.1| tyrosine recombinase [Escherichia coli O157:H7 str. TW14359]
 gi|261226671|ref|ZP_05940952.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256942|ref|ZP_05949475.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291285694|ref|YP_003502512.1| Type 1 fimbriae regulatory protein FimE [Escherichia coli O55:H7
           str. CB9615]
 gi|12519320|gb|AAG59495.1|AE005662_7 recombinase involved in phase variation; regulator for fimA
           [Escherichia coli O157:H7 str. EDL933]
 gi|13364750|dbj|BAB38695.1| type 1 fimbriae regulatory recombinase protein FimE [Escherichia
           coli O157:H7 str. Sakai]
 gi|81248071|gb|ABB68779.1| FimE [Shigella boydii Sb227]
 gi|187770271|gb|EDU34115.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4196]
 gi|188016166|gb|EDU54288.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4113]
 gi|188999765|gb|EDU68751.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4076]
 gi|189357927|gb|EDU76346.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4401]
 gi|189364101|gb|EDU82520.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4486]
 gi|189368977|gb|EDU87393.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4501]
 gi|189375139|gb|EDU93555.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC869]
 gi|189379521|gb|EDU97937.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC508]
 gi|208725518|gb|EDZ75119.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4206]
 gi|208735041|gb|EDZ83728.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4045]
 gi|208741655|gb|EDZ89337.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4042]
 gi|209159996|gb|ACI37429.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4115]
 gi|209749368|gb|ACI72991.1| type 1 fimbriae regulatory recombinase protein FimE [Escherichia
           coli]
 gi|209749370|gb|ACI72992.1| type 1 fimbriae regulatory recombinase protein FimE [Escherichia
           coli]
 gi|209749372|gb|ACI72993.1| type 1 fimbriae regulatory recombinase protein FimE [Escherichia
           coli]
 gi|209749374|gb|ACI72994.1| type 1 fimbriae regulatory recombinase protein FimE [Escherichia
           coli]
 gi|209749376|gb|ACI72995.1| type 1 fimbriae regulatory recombinase protein FimE [Escherichia
           coli]
 gi|217322842|gb|EEC31266.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. TW14588]
 gi|254595715|gb|ACT75076.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O157:H7 str. TW14359]
 gi|290765567|gb|ADD59528.1| Type 1 fimbriae regulatory protein FimE [Escherichia coli O55:H7
           str. CB9615]
 gi|309704783|emb|CBJ04134.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli ETEC H10407]
 gi|320186174|gb|EFW60915.1| type 1 fimbriae regulatory protein FimE [Shigella flexneri CDC
           796-83]
 gi|320190573|gb|EFW65223.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC1212]
 gi|320639040|gb|EFX08686.1| tyrosine recombinase [Escherichia coli O157:H7 str. G5101]
 gi|320644409|gb|EFX13474.1| tyrosine recombinase [Escherichia coli O157:H- str. 493-89]
 gi|320649727|gb|EFX18251.1| tyrosine recombinase [Escherichia coli O157:H- str. H 2687]
 gi|320654775|gb|EFX22744.1| tyrosine recombinase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320660628|gb|EFX28089.1| tyrosine recombinase [Escherichia coli O55:H7 str. USDA 5905]
 gi|320665556|gb|EFX32602.1| tyrosine recombinase [Escherichia coli O157:H7 str. LSU-61]
 gi|326345375|gb|EGD69118.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. 1125]
 gi|326346770|gb|EGD70504.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. 1044]
 gi|332083284|gb|EGI88515.1| phage integrase family protein [Shigella boydii 5216-82]
 gi|332087140|gb|EGI92274.1| phage integrase family protein [Shigella boydii 3594-74]
          Length = 198

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 68/162 (41%), Gaps = 10/162 (6%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAI-- 210
           AR+  ++ L Y  G+RISE L L  Q++  ++  + I+   +    V PL    R+A+  
Sbjct: 26  ARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVER 85

Query: 211 --LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
             LE  +    D    I    F   RG  L+     R IR      G    T  H LRH+
Sbjct: 86  WTLERANWKGADRTDAI----FISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHA 141

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-GGDW 309
               L   G D R IQ  LGH  +  T  YT  N+    G W
Sbjct: 142 CGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLW 183


>gi|317011740|gb|ADU85487.1| integrase/recombinase XercD family protein [Helicobacter pylori
           SouthAfrica7]
          Length = 330

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 122/270 (45%), Gaps = 33/270 (12%)

Query: 48  IFLAF-YTEEKITIQTIRQLSYTEIRAFI---SKRRTQKIGDRSLKRSLSGIKSFLKYL- 102
           +FL F Y + +I ++++R L+  ++  F+   +K R       S+ + +  ++ F  YL 
Sbjct: 50  LFLFFEYFDNRIKLKSLRNLAEEQVIDFLFGLAKNRKSS----SMAKYVMYLRQFFDYLD 105

Query: 103 KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
           +KR    +  + N+   KK   LP+ LN+      +  +L +  H     + RN  IL L
Sbjct: 106 RKRNYNFDFELKNLSFAKKETHLPKHLNKNDFKAFIYALLKY--HPKTSFEKRNQCILLL 163

Query: 163 LYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           +   GLR  EAL L  +NI   ++   L I+GK +K R       + K  L+     P +
Sbjct: 164 IVLGGLRKFEALDLELKNIALENNHYRLLIKGKNNKERY----AYIEKEFLQ----VPLN 215

Query: 221 --LNLNIQLPLFRG--IRGKPLNPGV-----FQRYIRQLRRYLGLPLSTTA---HTLRHS 268
             L+   +L  F+G  +  K  N         + +I ++ +   + + +     H  RHS
Sbjct: 216 AWLSDTKRLKSFKGRFVFKKAKNNTTQKTCSLKGFIAKIFKLSNIDVKSYGLGLHLFRHS 275

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           FAT +     DL      LGH  L +T+IY
Sbjct: 276 FATFIYDETQDLVLTSRALGHSSLLSTKIY 305


>gi|301309845|ref|ZP_07215784.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300831419|gb|EFK62050.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 311

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 60/142 (42%), Gaps = 16/142 (11%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G+   +   L  +NI D       Q  G  I++   +PS    +LE    C         
Sbjct: 148 GIAFVDLAHLKWENIRDGILQYHRQKSGSLIQLE--IPSGALRLLEELSAC----TAKES 201

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRY----------LGLPLSTTAHTLRHSFATHLLSN 276
           L LF  + G+      ++ Y R L R+           G+ L  T++T+RHSFA+ L   
Sbjct: 202 LYLFPFLSGRRTGEAAYKEYNRTLSRFNREMKLLARSTGVTLPVTSYTIRHSFASFLKEQ 261

Query: 277 GGDLRSIQSILGHFRLSTTQIY 298
              +  I  +LGH  + TTQIY
Sbjct: 262 DVSIEVISELLGHKSIKTTQIY 283


>gi|261416592|ref|YP_003250275.1| integrase family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373048|gb|ACX75793.1| integrase family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326868|gb|ADL26069.1| site-specific recombinase, phage integrase family [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 278

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 114/276 (41%), Gaps = 40/276 (14%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR--SL 88
           L+ LT+++Y  + ++  +F      E +T +T+R            KR  + + ++  ++
Sbjct: 18  LAPLTVRTYYWNLKKIALFEPGLECECVTSETVRNY----------KRYLETLHNKEATV 67

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            ++LS  + F   +K   +       N++       + RA + +  LTL +   L+ S+ 
Sbjct: 68  VKALSVFRIFCNKMKADGVIHGDPFENVK-------VGRAYSRRGFLTLRELKHLYLSYM 120

Query: 149 TKWID---ARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
              +    A +  +   L+ C  GLR  +  +L    I D +   ++   G+ + I P+ 
Sbjct: 121 ESHVALTRAEDDVMRVFLFSCFTGLRYGDLRTLDASEIFDWKIRKQMHKTGEAVYI-PI- 178

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
                         P    L +  PL  G     ++   F R +R+  + LG       H
Sbjct: 179 --------------PVQARLLLPNPLTSGRVFHVVDNSTFNRTLRKAAKKLGHYKHVHCH 224

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
             RH+FAT  ++ G  L +   +LGH  L TT IY 
Sbjct: 225 LARHTFATTCITIGIPLPATSKLLGHRNLDTTLIYA 260


>gi|320183918|gb|EFW58744.1| Resolvase [Shigella flexneri CDC 796-83]
          Length = 288

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +  T HT RHS+A HL  +G   R +QS+LGH    +T+IYT V S
Sbjct: 212 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFS 257


>gi|306780830|ref|ZP_07419167.1| integrase [Mycobacterium tuberculosis SUMu002]
 gi|306790052|ref|ZP_07428374.1| integrase [Mycobacterium tuberculosis SUMu004]
 gi|306794135|ref|ZP_07432437.1| integrase [Mycobacterium tuberculosis SUMu005]
 gi|308326334|gb|EFP15185.1| integrase [Mycobacterium tuberculosis SUMu002]
 gi|308333494|gb|EFP22345.1| integrase [Mycobacterium tuberculosis SUMu004]
 gi|308337528|gb|EFP26379.1| integrase [Mycobacterium tuberculosis SUMu005]
          Length = 332

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 61/147 (41%), Gaps = 17/147 (11%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           D R   ++ L    GLR +EA      ++MD    L + GK  K RIVP        I +
Sbjct: 188 DRRIELMIRLAGEAGLRRAEAAQAHTGDLMDG-GLLLVHGKDGKRRIVP--------ISD 238

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           Y      D       P   G  G      V +   R       LP   T HTLRH +AT 
Sbjct: 239 YLAALIRDTPHGYLFP--NGTGGHLTAEHVGKLVSR------ALPGDATMHTLRHRYATR 290

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYT 299
                 +LR++Q +LGH  + TT+ YT
Sbjct: 291 AYRGSHNLRAVQQLLGHASIVTTERYT 317


>gi|189462529|ref|ZP_03011314.1| hypothetical protein BACCOP_03218 [Bacteroides coprocola DSM 17136]
 gi|189430690|gb|EDU99674.1| hypothetical protein BACCOP_03218 [Bacteroides coprocola DSM 17136]
          Length = 411

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 70/155 (45%), Gaps = 20/155 (12%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD 215
            ++ C  GL   +   LT  NI       L I  K  K      VPLL   +  + +Y  
Sbjct: 249 FIFACFTGLAYIDVAGLTQDNIRKSFDGNLWIMTKRQKTNTDVNVPLLDIPKMILKKYKG 308

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
             P   N  I LP+   I  + LN      Y++++    G+  + T H  RH+FAT   L
Sbjct: 309 KLP---NGKI-LPV---ISNQKLNA-----YLKEIADICGIKKNLTFHLARHTFATTTTL 356

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGD 308
           S G  + ++  +LGH  + TTQIY  + NSK G D
Sbjct: 357 SKGVPIETVSKMLGHTNIETTQIYARITNSKIGSD 391


>gi|329732225|gb|EGG68575.1| site-specific recombinase, phage integrase family [Staphylococcus
           aureus subsp. aureus 21193]
          Length = 405

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 84/208 (40%), Gaps = 32/208 (15%)

Query: 132 KQALTLVDNVLLHTSHETKWIDARN----SAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           K+ L   D ++ H  H T+    RN     A++      G+RI E L++   N+  +  T
Sbjct: 192 KELLQCFDYLIKHKRHATR---KRNYEMVKALVEFQINNGMRIGELLAIKTDNVDVENKT 248

Query: 188 LRIQGKGDKI--------------------RIVPLLPS----VRKAILEYYDLCPFDLNL 223
           L I G  + +                    R + L       ++K +LE      ++   
Sbjct: 249 LEIDGTINWVTDVETGAFGVKETTKTSKSYRTIGLTTQSINLLKKLMLENKKENQWNAKF 308

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             +  +F    G P++       I++      +    T HTLRH+  + L   G +L++I
Sbjct: 309 IDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQLGINLKAI 368

Query: 284 QSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           Q  +GH    TT +IYT+V  +   D M
Sbjct: 369 QDRVGHSDYKTTLEIYTHVTDQMAKDMM 396


>gi|323185236|gb|EFZ70601.1| integrase [Escherichia coli 1357]
          Length = 326

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 28/186 (15%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--------TKWIDARNSAILYLLYGCGLRISEALS 175
           S P  L   +  T+ +  +   +HE         K  D   + ++ +    G R  EA++
Sbjct: 130 SYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICLSTGARWREAVN 189

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           LT   +   + T  ++ KG K R +P+   + + I+    L  F+               
Sbjct: 190 LTRSQVTKYRITF-VRTKGKKNRSIPISKELYEEIMA---LDGFNF-------------- 231

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  FQ      +  + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T
Sbjct: 232 --FTDCYFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMT 289

Query: 296 QIYTNV 301
             Y ++
Sbjct: 290 MRYAHL 295


>gi|300812763|ref|ZP_07093164.1| site-specific recombinase, phage integrase family [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|313123732|ref|YP_004033991.1| integrase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|300496256|gb|EFK31377.1| site-specific recombinase, phage integrase family [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|312280295|gb|ADQ61014.1| Integrase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 305

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 23/152 (15%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD------KIRIVPLLPSVRKAILE 212
           ++ L+   GLR SEAL LT ++I  +Q T+ +    D        +      SVRK    
Sbjct: 138 MILLIAKTGLRFSEALGLTKEDIDLEQQTINVDKTWDYKSYTGSFKQTKNASSVRK---- 193

Query: 213 YYDLCPFDLNLNIQL-PLFRGI-RGKPL--NPGVFQRYIRQLRR----YLGLPLSTTAHT 264
                P D  L +QL  + + +  G+P+     VF   +  L +     L +P+  + H 
Sbjct: 194 ----VPIDWKLAMQLNQVIQDLPNGEPIFAQKRVFNSTVNNLLKKHCEELNIPV-ISVHG 248

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           LRH+ A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 249 LRHTHASLLLFAGVSIASVARRLGHADMTTTQ 280


>gi|260593266|ref|ZP_05858724.1| integrase [Prevotella veroralis F0319]
 gi|260534823|gb|EEX17440.1| integrase [Prevotella veroralis F0319]
          Length = 431

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 27/164 (16%)

Query: 158 AILYLLYGC--GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVRKAIL 211
           A L  ++ C  GL IS+  +L  ++I    D Q  +R + +  K+  IVPL P + +AI+
Sbjct: 238 ARLMFVFSCFTGLAISDMENLEYKHIQTAADGQMYIRKERQKTKVEFIVPLHP-IAEAII 296

Query: 212 -----------EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
                      E   +   D NL       R +    L+          + +  G+    
Sbjct: 297 NHCRSEKRRSEEQQTVKEKDDNLVFHRDCSRSVMDAKLSI---------VGKACGICQRL 347

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + H  RH+F T  LS G  + SI  ++GH  +S+TQ+Y  V  K
Sbjct: 348 SFHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDK 391


>gi|225026009|ref|ZP_03715201.1| hypothetical protein EUBHAL_00247 [Eubacterium hallii DSM 3353]
 gi|224956659|gb|EEG37868.1| hypothetical protein EUBHAL_00247 [Eubacterium hallii DSM 3353]
          Length = 308

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 82/184 (44%), Gaps = 23/184 (12%)

Query: 126 PRA-----LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           PRA     LN+ +  TL+ ++ L  S E  W        + L+   G+R SEAL++TP +
Sbjct: 110 PRAKKIKYLNQFELHTLIASLDL--SEEPNW-----DWFILLVAKTGMRFSEALAITPSD 162

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEYYDLCPFD---LNLNIQLPLFRG 232
               +  L I    D       LP     SVRK  +++  +  F      L    P+F G
Sbjct: 163 FDFARQALSISKTWDYKGEGGFLPTKNRSSVRKIQIDWQIVVKFSELIKGLPEDEPIFIG 222

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
            + K  N  V     R  ++  G+    + H LRH+ A+ LL  G  + S+   LGH  +
Sbjct: 223 -KSKIYNSTVNDVLTRHCKQ-CGIS-DISIHGLRHTHASLLLFAGVSIASVARRLGHASM 279

Query: 293 STTQ 296
           +TTQ
Sbjct: 280 TTTQ 283


>gi|253987680|ref|YP_003039036.1| type 1 fimbriae regulatory protein fimb [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211638587|emb|CAR67207.1| type 1 fimbriae regulatory protein fimb [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253779130|emb|CAQ82290.1| type 1 fimbriae regulatory protein fimb [Photorhabdus asymbiotica]
          Length = 188

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 71/160 (44%), Gaps = 3/160 (1%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEY 213
           RN  ++Y+ +  G R+SEA  L   ++  ++  L I+  KG      PLL    +AI  +
Sbjct: 27  RNYCLVYMSFIHGFRVSEARHLRLSDMELNERCLYIRRLKGGFCTNHPLLRREIRAIKAW 86

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
             +    L  +    LF    GKPL      + I +L +   + +    H LRH+    L
Sbjct: 87  LKVRKTFLGADSDW-LFLSRSGKPLTRQRIYQIISRLGQLANIAVVPHPHMLRHACGFAL 145

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-GGDWMME 312
              G D R IQ  LGH  +  T  YT  N++   G W M+
Sbjct: 146 ADRGVDTRLIQDYLGHKNIRHTVRYTASNAERFQGVWGMK 185


>gi|126664437|ref|ZP_01735421.1| probable integrase/recombinase [Marinobacter sp. ELB17]
 gi|126668630|ref|ZP_01739582.1| probable integrase/recombinase [Marinobacter sp. ELB17]
 gi|126626889|gb|EAZ97534.1| probable integrase/recombinase [Marinobacter sp. ELB17]
 gi|126630763|gb|EBA01377.1| probable integrase/recombinase [Marinobacter sp. ELB17]
          Length = 403

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 134/315 (42%), Gaps = 40/315 (12%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
           G + P+   F  L    +W + +E +RGL+  T  +Y      +L++L     E   + +
Sbjct: 101 GGDGPQSEDFTALL--ASWSKEME-QRGLAVATRSAYGHAACDYLLYL-----EGTGLTS 152

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +       I  F+   R  +  + ++   ++  + FL + ++  +    N L M N+K+ 
Sbjct: 153 LAMADGASILRFLESLR-GRWAETAMWTVVTNFRPFLNFTRRGDLL---NALKMANVKRH 208

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           + +   L   + L +V     H     + + AR+++I+ L    GLR  + ++L  ++I 
Sbjct: 209 HGIVPLLGNDEELAVV-----HACTHGE-VSARDASIVLLTLVTGLRACDLIALRLKDID 262

Query: 183 DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPL 238
              ST+ I Q K      +PLLP +   + +Y       LN        PLF     + L
Sbjct: 263 WRGSTIGIVQRKTGNPLTLPLLPVIAGKLAKYV------LNERTNSKDDPLFL----RML 312

Query: 239 NP-------GVFQRYIRQLRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHF 290
            P              R++    G+  +      LRH+ A+ LL  G  L +I ++LGH 
Sbjct: 313 APHTELADHSSIYEVTRKVFAAAGVDRTKVGTRLLRHNAASKLLRAGTPLPTISAVLGHS 372

Query: 291 RLSTTQIYTNVNSKN 305
              +T +Y + ++ +
Sbjct: 373 SPDSTNVYLSTDTGH 387


>gi|329960976|ref|ZP_08299255.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328532262|gb|EGF59066.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 405

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 32/166 (19%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI-----VPLLPSVRKAILEYY 214
            L+GC  GL   +  +LTP++   D S  RI  K  +++      +PLLP + K IL+ Y
Sbjct: 252 FLFGCFTGLSYIDIKTLTPEHFEKD-SAGRIWIKKRRVKTGVLSRIPLLP-IAKLILDKY 309

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPL----NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
                           +G  GK L    +P    +Y++ +    G+      HT RH+FA
Sbjct: 310 ----------------KG--GKKLLPIQDPADINKYLKDIAILCGINKRICFHTSRHTFA 351

Query: 271 THL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           + + L+N   L  +  +LGH     T  Y  +  K  G+ M ++ D
Sbjct: 352 STVTLANNISLEVVSKMLGHTNTRMTAHYAKLIDKCIGEQMDKLMD 397


>gi|331676587|ref|ZP_08377283.1| integrase for prophage [Escherichia coli H591]
 gi|320199038|gb|EFW73635.1| putative bacteriophage integrase [Escherichia coli EC4100B]
 gi|323942719|gb|EGB38884.1| phage integrase [Escherichia coli E482]
 gi|323953492|gb|EGB49358.1| phage integrase [Escherichia coli H252]
 gi|331075276|gb|EGI46574.1| integrase for prophage [Escherichia coli H591]
          Length = 350

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 28/186 (15%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--------TKWIDARNSAILYLLYGCGLRISEALS 175
           S P  L   +  T+ +  +   +HE         K  D   + ++ +    G R  EA++
Sbjct: 154 SYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICLSTGARWREAVN 213

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           LT   +   + T  ++ KG K R +P+   + + I+    L  F+   +           
Sbjct: 214 LTRSQVTKYRITF-VRTKGKKNRSIPISKELYEEIMA---LDGFNFFTDC---------- 259

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  FQ      +  + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T
Sbjct: 260 ------YFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMT 313

Query: 296 QIYTNV 301
             Y ++
Sbjct: 314 MRYAHL 319


>gi|319788822|ref|YP_004090137.1| integrase family protein [Ruminococcus albus 7]
 gi|315450689|gb|ADU24251.1| integrase family protein [Ruminococcus albus 7]
          Length = 359

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 103/251 (41%), Gaps = 32/251 (12%)

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           EI  F++ +    +  R +   L  +KS  KY  +            +N+    ++P+  
Sbjct: 110 EIYGFMNAKIGNGLSSRYVSDILVLMKSMFKYAARE--------YGFKNVFDGITMPKKQ 161

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL- 188
           +++  L   D      S+ T+        I   +Y  GLR+ E  +LT  +I  D  TL 
Sbjct: 162 SKEVRLLTKDEENKLKSYITEKPTLAGMGIALTMY-TGLRVGELCALTWADIDLDYRTLT 220

Query: 189 ------RIQGK--GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG----- 235
                 RIQ    G K +++   P   K+      + P    +   L  F+   G     
Sbjct: 221 VKKTMQRIQNHEGGGKTKLIISEPKSEKS----RRIIPIPECMIEMLRSFKADDGCFLLT 276

Query: 236 ---KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
              KP+ P   Q    +L + LGLP     H LRH +A+  +  G D++++  ILGH  +
Sbjct: 277 GKDKPMEPRAMQYRFSRLLKKLGLP-HIHYHALRHGWASRAIELGFDVKTLSEILGHSSV 335

Query: 293 S-TTQIYTNVN 302
             T ++Y + N
Sbjct: 336 ELTMRLYVHSN 346


>gi|295697302|ref|YP_003590540.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295412904|gb|ADG07396.1| integrase family protein [Bacillus tusciae DSM 2912]
          Length = 413

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 109/274 (39%), Gaps = 36/274 (13%)

Query: 48  IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI 107
           +FLAF   E +T  T   L+   +  +++         +++   L+ +++FL++L     
Sbjct: 143 LFLAFLASENVTPDT---LTARHVSRYVTT--LMNYNPKTVLAILTNLRTFLRFLHDAGF 197

Query: 108 TTESNILNMRNLKKSNSLPRALNEK----QALTLVDNV--LLHTSHETKWIDARNSAILY 161
             +           S ++PR    +     ++   D V  LL+          R+ AIL 
Sbjct: 198 HAQD---------LSGAVPRVRAGRYERLPSVWPADTVQRLLNAVDRGNPTGKRDYAILL 248

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           L    G+R+ +  +LT   +  +  T+  +Q K  +    PLL  V  AI++Y       
Sbjct: 249 LAARLGMRVGDIKALTLSALHWESKTITWVQQKTGRAIEYPLLDDVGWAIIDYLKYG--- 305

Query: 221 LNLNIQLPLFRGIRGKPLNP--------GVFQRYIRQLRRYLGLPLSTTA-HTLRHSFAT 271
                  P+       P  P         +  RY+R  R  + +P      H LRH+ A+
Sbjct: 306 -RPATTSPVLFVRHYAPFEPFGSHANLHHIITRYVR--RAGISVPAGHHGMHALRHTLAS 362

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            LL     L  I  ILGH    +TQ+Y  VN + 
Sbjct: 363 TLLERETPLPVIAEILGHLSTQSTQVYLAVNREG 396


>gi|259501397|ref|ZP_05744299.1| phage integrase family integrase/recombinase [Lactobacillus iners
           DSM 13335]
 gi|302190882|ref|ZP_07267136.1| phage integrase, N-terminal SAM domain protein [Lactobacillus iners
           AB-1]
 gi|259167201|gb|EEW51696.1| phage integrase family integrase/recombinase [Lactobacillus iners
           DSM 13335]
          Length = 329

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/251 (21%), Positives = 107/251 (42%), Gaps = 25/251 (9%)

Query: 61  QTIRQLSYTEIRAFISK----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           + +R++   +IR ++++    + + K+   +++R LS   SF  +L+      +S    +
Sbjct: 88  KNVREMETDDIRTYLTEYQQEKNSSKVTVDNIRRILS---SFFSWLEDENYILKSPARRI 144

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             +K + ++     ++    + D+            + R+ A++ +L   G+R+ E + L
Sbjct: 145 HKVKAALTIKETYTDEALEKMRDSCE----------EPRDLALIDILASTGMRVGELVLL 194

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG- 235
              +I  ++    + GKG K R+V      +  +L Y      D        LF  +R  
Sbjct: 195 NRDDINFEERECVVFGKGSKERMVYFDARTKIHLLTYLQGRTDD-----NPALFVSLRAP 249

Query: 236 -KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            + L  G  +  +R+L   L +      H  R + AT  +  G  +  +Q +LGH R+ T
Sbjct: 250 HERLKIGGVECRLRELGSKLDIE-KVHPHKFRRTLATMAIDKGMPIEQLQQLLGHKRIDT 308

Query: 295 TQIYTNVNSKN 305
           T  Y  V   N
Sbjct: 309 TLQYAMVKQSN 319


>gi|209517723|ref|ZP_03266560.1| integrase family protein [Burkholderia sp. H160]
 gi|209501898|gb|EEA01917.1| integrase family protein [Burkholderia sp. H160]
          Length = 410

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 69/172 (40%), Gaps = 28/172 (16%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSV 206
           AR   +  L Y  G+RISE                  DQ  L   GKGDK RIVP+   +
Sbjct: 207 ARCRWLTTLFYLQGMRISEVAGGQMGQFFRRLGADGQDQWWLETLGKGDKERIVPVSAEL 266

Query: 207 RKAILEYYDLCPFDL--NLNIQLPL---FRGIRGKPLNPGVFQRYIRQLRRYLGLPLST- 260
            + +  Y  L           + PL   F+G R + L+       I+ +     + L   
Sbjct: 267 VQELRSYRTLNGLAALPTRAEETPLVLPFKG-RNRCLSRSAIHDAIKGIFAGAAMWLRAR 325

Query: 261 --------------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                         +AH LRH+  +H    G DLR+I+  LGH  L+TT +Y
Sbjct: 326 GPEFADRADELERASAHWLRHTAGSHQADGGVDLRTIRDNLGHVSLNTTSLY 377


>gi|254437562|ref|ZP_05051056.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198253008|gb|EDY77322.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 309

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 4/74 (5%)

Query: 229 LFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           LF G + G+P+     +R+   +++ +G+P     H LRH+FA+ L+S G  L  I  +L
Sbjct: 206 LFPGDVPGQPVR--EIRRFWAHIQKQVGIP-DVRIHDLRHTFASLLVSGGASLEMIGKLL 262

Query: 288 GHFRLSTTQIYTNV 301
           GH ++ TTQ Y ++
Sbjct: 263 GHSQMQTTQRYAHL 276


>gi|185178831|ref|ZP_02554882.2| site-specific recombinase, phage integrase family protein
           [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188024209|ref|ZP_02570121.2| site-specific recombinase, phage integrase family protein
           [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188518498|ref|ZP_02556703.2| site-specific recombinase, phage integrase family protein
           [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
 gi|188524047|ref|ZP_02557248.2| site-specific recombinase, phage integrase family protein
           [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|195867766|ref|ZP_03079767.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 9 str.
           ATCC 33175]
 gi|198273566|ref|ZP_03206102.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 4 str.
           ATCC 27816]
 gi|209554447|ref|YP_002284620.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|225550758|ref|ZP_03771707.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
 gi|225551043|ref|ZP_03771989.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 8 str.
           ATCC 27618]
 gi|184209466|gb|EDU06509.1| site-specific recombinase, phage integrase family protein
           [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188018863|gb|EDU56903.1| site-specific recombinase, phage integrase family protein
           [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188997882|gb|EDU66979.1| site-specific recombinase, phage integrase family protein
           [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
 gi|195659777|gb|EDX53157.1| site-specific recombinase, phage integrase family protein
           [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|195660621|gb|EDX53877.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 9 str.
           ATCC 33175]
 gi|198250086|gb|EDY74866.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 4 str.
           ATCC 27816]
 gi|209541948|gb|ACI60177.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|225378858|gb|EEH01223.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 8 str.
           ATCC 27618]
 gi|225379912|gb|EEH02274.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
          Length = 250

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 29/148 (19%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD-L 216
            I+  L+  G+R  E   L P N     + L + GKG+K R +  +    + + ++Y+ L
Sbjct: 115 TIIRFLFETGIRAHELFFLEPVN-----NRLYVLGKGNKKRQIFFVKQTFEQLQKFYENL 169

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
             F+    ++L + + I GK   P                      H+LR SFAT +L  
Sbjct: 170 KGFETTKTLRLYI-KKIIGKNFTP----------------------HSLRRSFATFMLIK 206

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           G + +++   +GH  + TT  Y N+N +
Sbjct: 207 GANPKTVMLQMGHANIQTTFSYLNLNEQ 234


>gi|91775667|ref|YP_545423.1| phage integrase [Methylobacillus flagellatus KT]
 gi|91709654|gb|ABE49582.1| phage integrase [Methylobacillus flagellatus KT]
          Length = 121

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 8/90 (8%)

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-----LGLPLSTTAHTLRHSFAT 271
            P D  L  +L     ++ K L   +F+    Q R       L LP    +H LRH+FA+
Sbjct: 15  IPIDAALYAEL---ANLKPKTLGGNLFKPAYNQFRHAVEKSNLQLPQGQLSHVLRHTFAS 71

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H + NGG++  +Q +LGH  L+ T  Y ++
Sbjct: 72  HFMMNGGNILVLQRLLGHSTLTMTMRYAHM 101


>gi|94310184|ref|YP_583394.1| phage integrase [Cupriavidus metallidurans CH34]
 gi|93354036|gb|ABF08125.1| tyrosine-based site-specific recombinase [Cupriavidus metallidurans
           CH34]
          Length = 419

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 120/292 (41%), Gaps = 29/292 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L  E+GL + + Q Y    R F  +L       I +     L    I  F+ +R 
Sbjct: 130 GFLPFLNDEKGLRQESQQRYLYTLRPFEAYL---NRGGIALSG---LEPAHISRFLEER- 182

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN--LKKSNSLPRALNEKQALTL 137
            + +    ++ +   ++ FL+YL +  I     + ++    + +  S+PRA+  +    L
Sbjct: 183 AKTLHKAGMRDTAGALRIFLRYLHREGIVATDLVRSVPRGRIYRQASIPRAIGWQDVERL 242

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQSTLRIQGKGD 195
           + ++          +  R+ AIL LL   GLR  E  AL L   +    Q ++ ++  G 
Sbjct: 243 LTSI-----DRRSILGKRDYAILTLLASYGLRAREIAALCLDDFDWTHAQISIPMRKGGH 297

Query: 196 KIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
             R  PL  +V  A++ Y      D+    + L  + P        P+        +   
Sbjct: 298 STRY-PLSATVGDAVISYLQARRSDVPHRQVFLTARSPYI------PMRHWTVSAMVGIR 350

Query: 251 RRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            R +G+ ++   +HTLRH+   HL+      + I   +GH   S+T +Y  V
Sbjct: 351 MRDIGIQVTRAGSHTLRHACVQHLVEADMPFKVIGDYVGHSHPSSTLVYGKV 402


>gi|261207999|ref|ZP_05922677.1| predicted protein [Enterococcus faecium TC 6]
 gi|260077757|gb|EEW65470.1| predicted protein [Enterococcus faecium TC 6]
          Length = 378

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 27/176 (15%)

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQG---------- 192
           TSH     + R S +   LY  G+R  EA++L+  +  I ++ +++ I G          
Sbjct: 196 TSH-----NKRYSLLFQWLYLTGMRPGEAIALSKDDVHITNNNASVVINGTMMYRERSIA 250

Query: 193 ---KGDKIRIVPLLPSV---RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
              K D  +    +  +   +KAI  Y +L   +LN N Q  LF+  +G P        Y
Sbjct: 251 DMKKSDSTKTAAGMREIDLPKKAIAIYNEL--LELNPNGQF-LFQTTKGTPFQLTAINTY 307

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNV 301
           +R  +  + +    ++H  RH+  + L   G  L +IQ  +GH     T+ IY +V
Sbjct: 308 LRNHKADMKIDKKLSSHIFRHTHISKLAELGTPLYAIQDRVGHENSDITEKIYLHV 363


>gi|167628712|ref|YP_001679211.1| phage integrase [Heliobacterium modesticaldum Ice1]
 gi|167591452|gb|ABZ83200.1| phage integrase [Heliobacterium modesticaldum Ice1]
          Length = 421

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 95/202 (47%), Gaps = 12/202 (5%)

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           S ++ FL++L K ++  +   + + +++ S+ +P    + +   L+  +   TS +T   
Sbjct: 179 STLRQFLRFLFKNRVLHDDYSVLVPSVRYSSPVPSIYTKSEITQLLKAI--DTSTKT--- 233

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
             RN AI+ L    GLR  + ++L   ++   ++    IQ K    + + LLP + K++L
Sbjct: 234 GKRNYAIVMLALRLGLRTGDIVNLKISDVNFTNKEICFIQEKTQLPQRLVLLPEIEKSLL 293

Query: 212 EYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS---TTAHTLRH 267
            Y      D +  NI L L    R  PL P +   +I       G+ +    + AH+LR 
Sbjct: 294 SYLSTARPDCDSPNIFLSLLAPYR--PLTPSLIWAHIHTHIESAGIIIGERKSGAHSLRM 351

Query: 268 SFATHLLSNGGDLRSIQSILGH 289
           + A+ L++       ++ ILGH
Sbjct: 352 TLASELVAEKVPYDVVRKILGH 373


>gi|154487132|ref|ZP_02028539.1| hypothetical protein BIFADO_00972 [Bifidobacterium adolescentis
           L2-32]
 gi|154084995|gb|EDN84040.1| hypothetical protein BIFADO_00972 [Bifidobacterium adolescentis
           L2-32]
          Length = 308

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 12/152 (7%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVR 207
           +A    ++ L+   GLR SEAL LTP +      TL +    D       +P     SVR
Sbjct: 135 EASWDWLILLIAKTGLRFSEALGLTPDDFDFAHQTLSVNKTWDYKNGGGFVPTKNESSVR 194

Query: 208 KAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           K  L++     +     +L    P+F  + GK  N        +  R  + +P+  + H 
Sbjct: 195 KVQLDWQLIMQMSGLLKDLPHDKPIF--VHGKVYNSTANDVLAKHCRN-VDVPV-ISVHG 250

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           LRH+ A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 251 LRHTHASLLLFAGVSIASVSRRLGHASMTTTQ 282


>gi|333008862|gb|EGK28322.1| integrase [Shigella flexneri K-272]
 gi|333020172|gb|EGK39442.1| integrase [Shigella flexneri K-227]
          Length = 350

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 28/186 (15%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--------TKWIDARNSAILYLLYGCGLRISEALS 175
           S P  L   +  T+ +  +   +HE         K  D   + ++ +    G R  EA++
Sbjct: 154 SYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICLSTGARWREAVN 213

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           LT   +   + T  ++ KG K R +P+   + + I+    L  F+   +           
Sbjct: 214 LTRSQVTKYRITF-VRTKGKKNRSIPISKELYEEIMA---LDGFNFFTDC---------- 259

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  FQ      +  + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T
Sbjct: 260 ------YFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMT 313

Query: 296 QIYTNV 301
             Y ++
Sbjct: 314 MRYAHL 319


>gi|94442250|dbj|BAE93624.1| integron integrase [uncultured bacterium]
          Length = 211

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 83/192 (43%), Gaps = 48/192 (25%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K+   LP  L + +  TL++N           +   N  I  LLYG G+R  E L L   
Sbjct: 31  KQPRHLPVVLTQAEVGTLLEN-----------MKGVNGLIARLLYGTGMRKMECLRLRIM 79

Query: 180 NIMDDQSTLRIQ-GKG--DKIRIVP--LLPSVRKAILEYYDLCPFDLNLN---IQLPLF- 230
           ++  D S + ++ GKG  D+I ++P  L+ S+R        L  +D++     ++LP   
Sbjct: 80  DVDFDYSQIHVRSGKGGKDRIALLPDCLVASLRSQFEHVEKLHKYDIDEGYGEVELPFAL 139

Query: 231 --------RGIRGKPLNP----------GVFQRY----------IRQLRRYLGLPLSTTA 262
                   R  + + + P          GV +R+          IRQ   +  +    + 
Sbjct: 140 ERKYPNAGREWKWQYVFPSTKRSVDKRTGVIRRHHWHDTNVSRAIRQSVCFSRISKHVSV 199

Query: 263 HTLRHSFATHLL 274
           HTLRH+FATHLL
Sbjct: 200 HTLRHTFATHLL 211


>gi|298375971|ref|ZP_06985927.1| mobilizable transposon, int protein [Bacteroides sp. 3_1_19]
 gi|298267008|gb|EFI08665.1| mobilizable transposon, int protein [Bacteroides sp. 3_1_19]
          Length = 371

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 14/146 (9%)

Query: 163 LYGC--GLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           L+ C   LR+S+ LSL  + I+D  +  + +     K +   ++P   +A          
Sbjct: 223 LFSCLTSLRLSDVLSLCWEEIVDFAAGGKCVHTITQKTKTEDIIPISDEA---------- 272

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
            L L    P  +G+  K L     Q+ +++  R  G+  + T H+ R ++AT   + G D
Sbjct: 273 -LKLIGYSPEKKGLVFKGLKRSWTQQPMKEWIRSAGIIKNITFHSYRRTYATLQAAAGTD 331

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKN 305
           +R+IQS + H  ++TTQ Y  V   N
Sbjct: 332 IRTIQSNMAHKSITTTQRYMKVVDSN 357


>gi|295426011|ref|ZP_06818685.1| phage integrase family integrase/recombinase [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064327|gb|EFG55261.1| phage integrase family integrase/recombinase [Lactobacillus
           amylolyticus DSM 11664]
          Length = 364

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 118/282 (41%), Gaps = 40/282 (14%)

Query: 54  TEEKITIQTIRQLSYTEIRAFISK------RRTQKIGDRSLKRSLSGIKSFLKYL----- 102
           + + I + T+  L  ++I+ F+ +      +++ +   +++ R+++ ++S   YL     
Sbjct: 69  SNKDIELSTLEHLQASQIQMFLKELSFRQNKQSTRDSKKTINRTINALRSLFHYLTVTAD 128

Query: 103 --------------KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT-SH 147
                         K   +      ++ RN K S  L     + + L  + N   HT S 
Sbjct: 129 LNNGEPYFYRNVMLKVPLVKGSKESISYRNAKFSPMLYTGEKKHEWLDFISNQYEHTLSS 188

Query: 148 ETK----WIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPL 202
             +    +   R+ A++ +L G G+R+SE   L  +++ + D+S L I+ KG+K +  PL
Sbjct: 189 RARSSFLFNKERDLAVIAMLLGSGIRVSELARLNLKDLNLRDRSILVIR-KGNK-KDAPL 246

Query: 203 LPS-VRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +       I  Y D+      P      + L  + G   K +     +R++ +       
Sbjct: 247 IADWAMPYIKSYLDIREKRYQPAKNEQALFLTKYAG-HAKRIATNTVERFVGKYSEAFPD 305

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              TT H LRHS  T L     D+  + S LGH  +S T  Y
Sbjct: 306 GNRTTPHKLRHSLGTELYDESKDVMVVASQLGHTGISATDQY 347


>gi|253563055|ref|ZP_04840512.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|251946831|gb|EES87113.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
          Length = 393

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 29/147 (19%)

Query: 166 CGLRISEALSLTPQNIMDDQ-STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
           CGLR S+ ++LT  N+   +   + +     K + +  LP  ++A+              
Sbjct: 249 CGLRHSDIVALTWGNLKKGKVGKMELHMTQQKTQEILSLPLSKEALK------------- 295

Query: 225 IQLPLFRGIRGK-PLNPGVFQRYIRQLR---------RYLGLPLSTTAHTLRHSFATHLL 274
            QLP    +RGK P    VF+  I   R            G+    T H+ RH+ AT ++
Sbjct: 296 -QLP----VRGKVPDTEKVFKGLISLGRTNEILPKWAAKAGIQKHITFHSARHTHATMMI 350

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + G DL ++  +LGH  + TTQIY  +
Sbjct: 351 TLGADLYTVSKLLGHTNIQTTQIYAKI 377


>gi|53712967|ref|YP_098959.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60681179|ref|YP_211323.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
 gi|52215832|dbj|BAD48425.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60492613|emb|CAH07385.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
 gi|301162668|emb|CBW22215.1| putative bacteriophage integrase [Bacteroides fragilis 638R]
          Length = 406

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 29/147 (19%)

Query: 166 CGLRISEALSLTPQNIMDDQ-STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
           CGLR S+ ++LT  N+   +   + +     K + +  LP  ++A+              
Sbjct: 262 CGLRHSDIVALTWGNLKKGKVGKMELHMTQQKTQEILSLPLSKEALK------------- 308

Query: 225 IQLPLFRGIRGK-PLNPGVFQRYIRQLR---------RYLGLPLSTTAHTLRHSFATHLL 274
            QLP    +RGK P    VF+  I   R            G+    T H+ RH+ AT ++
Sbjct: 309 -QLP----VRGKVPDTEKVFKGLISLGRTNEILPKWAAKAGIQKHITFHSARHTHATMMI 363

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + G DL ++  +LGH  + TTQIY  +
Sbjct: 364 TLGADLYTVSKLLGHTNIQTTQIYAKI 390


>gi|37524279|ref|NP_927623.1| hypothetical protein plu0260 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36783702|emb|CAE12555.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 188

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 68/161 (42%), Gaps = 11/161 (6%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEY 213
           RN  ++Y+ Y  G R+SEA  L   ++   +  L I+  KG      PLL    KAI  +
Sbjct: 27  RNYCLVYMSYIHGFRVSEARHLRLSDMELKEKCLYIRRLKGGFCTNHPLLQREVKAIKAW 86

Query: 214 YDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
                  +   +Q      LF    GKPL      + I QL +   + +    H LRH+ 
Sbjct: 87  -----LKVRKTLQGADSDWLFLSRCGKPLTRQRIYQIINQLGQRANIAVDPHPHMLRHAC 141

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-GGDW 309
              L   G D R IQ  LGH  +  T  YT  N++   G W
Sbjct: 142 GFALADRGIDTRLIQDYLGHKNIRHTVRYTASNAERFQGVW 182


>gi|317501367|ref|ZP_07959569.1| transposase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|325263258|ref|ZP_08129993.1| transposase [Clostridium sp. D5]
 gi|328948774|ref|YP_004366111.1| integrase family protein [Treponema succinifaciens DSM 2489]
 gi|316897231|gb|EFV19300.1| transposase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|324031651|gb|EGB92931.1| transposase [Clostridium sp. D5]
 gi|328449098|gb|AEB14814.1| integrase family protein [Treponema succinifaciens DSM 2489]
          Length = 397

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 74/167 (44%), Gaps = 35/167 (20%)

Query: 162 LLYGCGLRISEALSLTPQNI-------MDDQSTLRIQGKG---------DKIRIVPLLPS 205
           +L G GLRISE   LT  +I         D   L++ G G           IR +P+   
Sbjct: 218 ILLGTGLRISELCGLTESDIDFEHKLINVDHQLLKVSGVGYHVETPKTKSGIRQIPMSTK 277

Query: 206 VRKA--------------ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           V +A              I+  Y    F LN N  LP    +  + +  G+ ++Y +   
Sbjct: 278 VYEAFKRVLNDRGRADNFIVGGYSRFLF-LNRN-GLPKV-AVNFETMFRGLVKKYNKSHE 334

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
               LP  TT HTLRH+F T+L + G + +++Q I+GH  ++ T  Y
Sbjct: 335 E--ALPKVTTPHTLRHTFCTNLANAGMNPKALQYIMGHSNINMTLNY 379


>gi|313652036|ref|YP_004046714.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940787|gb|ADR19978.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672]
          Length = 318

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 117/294 (39%), Gaps = 12/294 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L K ++N+L  L+  +  SK T+ +Y  +   F+ F   + ++   I   R      +  
Sbjct: 13  LQKHKENFLNELK-SQNYSKNTITAYSQEIDYFIEFFRGFQDDMEIIDINRPFIQQSLIF 71

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKK--RKITTESNILNMRNLKKSNSLPRALNE 131
                +T KI   + K  L  +  F  YL      I   + + +   +K        LNE
Sbjct: 72  REENSKTGKIATNTKKMYLKALYQFFVYLTDAMNGIKDFTTLFSKIKIKAETRQKEYLNE 131

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---- 187
            +   L++ + +  +    +I  RN  ++ +L   G+R SE +++   +I   +      
Sbjct: 132 VEIKRLLNYINVKKNKRMSFITCRNILLIKILLYTGMRASEVINIKLSDITTYEQDKNII 191

Query: 188 -LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQR 245
            +RI GKG+K     +     K   E  D   F   LNI    LF    G+ +       
Sbjct: 192 QIRIIGKGNKEGFCYI--DHLKISEELEDTLLFRKRLNITSEYLFTTKTGRQMTRQEAFL 249

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               + +  G+      H  RH+   HL   G  +  IQ IL H  ++TT+IY 
Sbjct: 250 ATANILKKAGIN-KKGLHLFRHTLGFHLAQKGVRIEDIQEILRHSNINTTRIYV 302


>gi|293397378|ref|ZP_06641633.1| resolvase [Serratia odorifera DSM 4582]
 gi|291420113|gb|EFE93387.1| resolvase [Serratia odorifera DSM 4582]
          Length = 270

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 43/181 (23%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQN---------IMDDQSTLRIQGKGDKI------ 197
           D    A++ LL+  G RI+EALSL  ++         I+   +  R  G G         
Sbjct: 64  DWPQHALINLLWNTGARINEALSLKRRDLRLTVEMPHIILRTAKQRRSGPGRPAKGKSAN 123

Query: 198 RIVPL-----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           R++PL     +  +R+      +    D+    + PL            ++Q   R +R 
Sbjct: 124 RLIPLTDPHFVDELRRLFASTKEQFEIDVQTGERTPL-----------PIWQTTDRTVRN 172

Query: 253 YL----------GLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +L          G+  S   T H  RHS+A H+L  G  L+ +Q ++GH +  +T++YT 
Sbjct: 173 WLTKAERQANSEGIHFSVPVTPHVFRHSYAMHMLYQGTPLKVLQGLMGHEKGESTEVYTR 232

Query: 301 V 301
           V
Sbjct: 233 V 233


>gi|30908732|gb|AAP37598.1| IntI [uncultured bacterium]
          Length = 160

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 37/160 (23%)

Query: 162 LLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKG--DKIRIVP--LLPSVRKAILEYYDL 216
           LLYG G+R+ EA+ L  +++ +  +  +   GKG  D++ ++P  LL +VR  ++     
Sbjct: 1   LLYGTGMRLMEAVRLRVKDVELSRREIIVRDGKGGKDRVTMLPDSLLEAVRAHLVLRRAW 60

Query: 217 CPFDL---NLNIQLPLFRGI-----------------------------RGKPLNPGVFQ 244
              DL    +++ LP    +                             R   ++    Q
Sbjct: 61  HGQDLLLGKVDVWLPDALAVKYPNASNEWGWQYVFAAKNYSVDPRSKVQRRHHVDEKQVQ 120

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
           RY+++      +   T+ HTLRHSFATH+L  G D+R++Q
Sbjct: 121 RYVKKAALSAKIIKPTSPHTLRHSFATHVLQMGYDIRTVQ 160


>gi|85373646|ref|YP_457708.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter litoralis HTCC2594]
 gi|84786729|gb|ABC62911.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter litoralis HTCC2594]
          Length = 398

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 67/146 (45%), Gaps = 19/146 (13%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI--LEYYDLC 217
           L LL GC  R SE L+L   +I  ++  LR    G   R V L  + R+ I  L  ++  
Sbjct: 249 LLLLTGC--RKSEILTLEWTDIKGNRLHLRDSKTGP--RTVWLGSAAREVIAALPRFERI 304

Query: 218 PFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
           P+   N   + PL R + G          + R+LR   GLP     H LRH+FA+H   N
Sbjct: 305 PYPFWNYRYRKPL-RCVNG----------FWRRLRDEAGLP-DVRIHDLRHTFASHAAMN 352

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVN 302
              L  I  +LGH  + TT  Y + +
Sbjct: 353 KETLPMIGRLLGHANVQTTARYAHFD 378


>gi|586103|sp|P37375|TNPE_STAAU RecName: Full=Transposase B from transposon PsiTn554
 gi|152975|gb|AAA26607.1| 630 codon reading frame resembling tnpB of Tn554; transcription or
           translation signals upstream of the reading frame
           removed by the deletion noted above; presumed to be
           vestigial and not expressed; putative [Staphylococcus
           aureus]
          Length = 630

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 114/282 (40%), Gaps = 32/282 (11%)

Query: 38  SYECDTRQFLI-FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS--- 93
           SY  D  Q L  F  F   +   +Q + QL+  EI A++S+     I   ++   +S   
Sbjct: 236 SYVSDIAQKLKEFFNFLDIKFKHVQRVHQLTRVEIEAYLSELNMMGIKPSTITGRISILE 295

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
           G+ S L  L+   + ++  I      K   + PR ++E     +++ +  H     ++I 
Sbjct: 296 GLFSTLHRLEWDDVPSKLLIYPEDYPKIPRAKPRFIDE----FVLEQLNSHLDKLPEYI- 350

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----QGKGDKIRIVPLLPSVRKA 209
              + +  ++  CG+RISE  +L    +++D+         Q K  K  IVP+   V   
Sbjct: 351 ---ATMTMIVQECGMRISELCTLKKGCLLEDKDGYYFLKYYQWKMKKEHIVPISKEVVLL 407

Query: 210 ILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQ------RYIRQLRRYLGLPLS 259
           I    D       ++ + P    LF    G PL    F+       Y + +   LG    
Sbjct: 408 IKVRED------KVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKLGEIYR 461

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             AH  RHS  T  ++NG     +Q  LGH     T  Y ++
Sbjct: 462 FHAHAFRHSVGTRTINNGVPQHIVQKFLGHESPEMTSRYAHI 503


>gi|324009719|gb|EGB78938.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 57-2]
          Length = 326

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 28/186 (15%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--------TKWIDARNSAILYLLYGCGLRISEALS 175
           S P  L   +  T+ +  +   +HE         K  D   + ++ +    G R  EA++
Sbjct: 130 SYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICLSTGARWREAVN 189

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           LT   +   + T  ++ KG K R +P+   + + I+    L  F+               
Sbjct: 190 LTRSQVTKYRITF-VRTKGKKNRSIPISKELYEEIMA---LDGFNF-------------- 231

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  FQ      +  + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T
Sbjct: 232 --FTDCYFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMT 289

Query: 296 QIYTNV 301
             Y ++
Sbjct: 290 MRYAHL 295


>gi|189462830|ref|ZP_03011615.1| hypothetical protein BACCOP_03529 [Bacteroides coprocola DSM 17136]
 gi|189430446|gb|EDU99430.1| hypothetical protein BACCOP_03529 [Bacteroides coprocola DSM 17136]
          Length = 406

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 107/252 (42%), Gaps = 25/252 (9%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLK 120
           T   +  T  R F    R++   D +L      +++ F K ++ + +  E N      L 
Sbjct: 148 TFSHIDVTFCRKFEDWMRSKGNKDTTLSYQFRTLRAAFNKAIEAKIVAREKNPFIKYKLS 207

Query: 121 KSNS--LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG-LRISEALSLT 177
             N+  + RAL++K  + +++   +  S     +      +    Y CG +   +  +LT
Sbjct: 208 HFNTKTIKRALSKKDIMKIINANCIGKSE----LRQLTHDLFSFSYLCGGISFVDIANLT 263

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
           P+NI+D +   + Q     I + PL    +K I +Y D     + L    P+  G   K 
Sbjct: 264 PKNIVDGRLIYQRQKTHGNINL-PLSDKAQKIIDKYIDYQKQAIYL---FPILHG--KKH 317

Query: 238 LNP--------GVFQRYIRQLRRY---LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           + P         V  +  ++L+ +   L +    T +  RHSFAT L  +G ++  I   
Sbjct: 318 ITPMQKSNRVHKVCHQINQELKIFAKELNIKSEVTTYVARHSFATILKKSGVNIGIISEA 377

Query: 287 LGHFRLSTTQIY 298
           LGH  + TTQIY
Sbjct: 378 LGHQDIKTTQIY 389


>gi|75812896|ref|YP_320513.1| Phage integrase [Anabaena variabilis ATCC 29413]
 gi|75705652|gb|ABA25324.1| Phage integrase [Anabaena variabilis ATCC 29413]
          Length = 360

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 130/315 (41%), Gaps = 60/315 (19%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS---- 76
           W+ ++ I+   S  T ++Y    RQ    L  Y + +  I  +R ++   + A+++    
Sbjct: 49  WVHSVTIK---SDQTRRAY----RQIGYELVDYMQSRFGISDLRMVTLFHLHAYLAWLKD 101

Query: 77  ------KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLP-RA 128
                 K+ T  I   +  +  + IKS  ++  +  I   +  L    +++  + L  R 
Sbjct: 102 EKPVRGKKNTYGISKNTAAKYTAAIKSLWEWGTRASIGYFAIDLGKDLSIQWDDKLAERI 161

Query: 129 LNEKQ------ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS------- 175
           L+E++      A   VD  L H +++  W+      +  L++  G+R  E          
Sbjct: 162 LSEREIAKLEKAAMAVD--LQHNTNKMHWL------LFTLMFYSGVRAGEIARQTSDYGK 213

Query: 176 --LTP----QNIMDDQSTL--RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
             +TP    +   +D   L   + GK +K R + L P     +L+Y      D       
Sbjct: 214 RVITPGLFWRQFREDGDCLLLTVTGKRNKTRTISLDPETSAVLLDYRGDASNDR------ 267

Query: 228 PLF----RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
           P+F    R  RGKPL+    +  + ++    G+  S  AH LRH+ AT    NG     +
Sbjct: 268 PVFPSPSRRDRGKPLSDRGLRLMMEEISTCAGIKFS--AHFLRHTHATLAKKNGASDFDL 325

Query: 284 QSILGHFRLSTTQIY 298
           Q+ LGH   +TT  Y
Sbjct: 326 QADLGHASPATTAKY 340


>gi|227519034|ref|ZP_03949083.1| bacteriophage integrase [Enterococcus faecalis TX0104]
 gi|227073534|gb|EEI11497.1| bacteriophage integrase [Enterococcus faecalis TX0104]
          Length = 392

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 112/252 (44%), Gaps = 42/252 (16%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNI---------LNMRNLKKS-NSLPRALNEKQALT 136
           SL+  +  +     Y KK+ +  E+ +         L++++LK+S NSL     E + LT
Sbjct: 133 SLQSLVQVLNMVFNYCKKKNLINENPMKFVKMPKYQLSLKDLKESVNSL-----EDKFLT 187

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL------RI 190
            VD +    ++   + +   S + ++L+  G R+SEAL+L PQ+I  +++ +       +
Sbjct: 188 -VDELRAFLNYGIVYEELPMSVLFHVLFYTGCRVSEALALQPQDIDFERNEILFYKQTAV 246

Query: 191 QGKGDKIRI-----------VPLLPSVRKAILEYYD-LCPFDLNLNIQLP-------LFR 231
           +GK    RI           VP+ P V + + E  D L     N N  +        L  
Sbjct: 247 KGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRNSNFVVDETYLFVYLDP 306

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           G RG P        ++++     G+      H  RH+ A+ L++       ++  LGH  
Sbjct: 307 GKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMAS-LVAEYCSWDVLKDRLGHTD 365

Query: 292 LSTTQIYTNVNS 303
            +T++IY ++ S
Sbjct: 366 STTSKIYRHLTS 377


>gi|283797039|ref|ZP_06346192.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
 gi|291075455|gb|EFE12819.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
 gi|291528287|emb|CBK93873.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
 gi|291534519|emb|CBL07631.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
          Length = 432

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 4/87 (4%)

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG-LPLSTTAHTLRHSFATHLLSN 276
           P D N  I L   R   G    P   +  +R  R+ L  L  +   HTLRH++ T+LLSN
Sbjct: 331 PLDYN-EIDLVCIRP-DGAYEAPATVETALRTARKRLSELDDNFHFHTLRHTYTTNLLSN 388

Query: 277 GGDLRSIQSILGHFRLSTT-QIYTNVN 302
           G   + +Q +LGH  +STT  +Y + N
Sbjct: 389 GAAPKDVQELLGHSDVSTTMNVYAHAN 415


>gi|41408246|ref|NP_961082.1| hypothetical protein MAP2148 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41396601|gb|AAS04465.1| hypothetical protein MAP_2148 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 227

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 81/195 (41%), Gaps = 8/195 (4%)

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +K + K+L      +   +L ++  K    +  AL E Q        L+        +D 
Sbjct: 9   LKRYAKWLVDEGELSSDPLLGLKPPKGDQKVVNALTEDQL-----KRLIAACQGKSLMDR 63

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213
           R+  I+ L+   GLR +E LSL   ++  D   + I +GKG K R+ P       AI + 
Sbjct: 64  RDETIVRLMAETGLRANETLSLQITDVNLDAGIVTIVRGKGGKGRVSPFSVQTATAI-DR 122

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
           Y        L+    L+ G  GK L      + ++Q     G+  +   H LRH+ AT  
Sbjct: 123 YLRARRAHRLSNTGALWLGGGGKSLGYYGLSKALKQRATAAGIE-TFHLHMLRHTAATRW 181

Query: 274 LSNGGDLRSIQSILG 288
           L  GG    + S+ G
Sbjct: 182 LRAGGSESGLMSVAG 196


>gi|260909620|ref|ZP_05916319.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260636263|gb|EEX54254.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 409

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +Q Y++ LR   G+  S T HT RH+FAT + L  G  + ++  +LGH  +S T+ Y  V
Sbjct: 327 YQSYLKALRLRAGISFSFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKV 386

Query: 302 N 302
            
Sbjct: 387 T 387


>gi|237725482|ref|ZP_04555963.1| integrase [Bacteroides sp. D4]
 gi|229436169|gb|EEO46246.1| integrase [Bacteroides dorei 5_1_36/D4]
          Length = 383

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 66/156 (42%), Gaps = 26/156 (16%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----QGKGDKIRIVPLLPSVRKA 209
           A   A L+  Y C LRIS+ + LT  +I  D    R+    +   D I  +PL     K 
Sbjct: 228 AVKQAFLFSCY-CALRISDVIGLTWGDIHKDGDQWRVFTVMEKTNDPI-YLPLSKQAMKW 285

Query: 210 ILEYYDLCP----FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           + E  D       FDL    ++ +                 + +  +  G+    T H  
Sbjct: 286 LPERGDAKDEDKVFDLPSESRICII----------------LDKWAKAAGINKHVTYHVS 329

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           RH+FAT +L+   D+ +   +LGH  +STTQIY  +
Sbjct: 330 RHTFATMMLTLDVDIYTTSKLLGHKNISTTQIYAKI 365


>gi|224582682|ref|YP_002636480.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224467209|gb|ACN45039.1| probable bacteriophage integrase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 308

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 20/147 (13%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I+ +    G R  EA++LT   +   + T  ++ KG K R +P+   + + I        
Sbjct: 155 IVKICLSTGARWREAVNLTRSQVTKYRITF-VRTKGKKNRSIPISKELYEEI-------- 205

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
                 I L  F     K  +   FQ      +  + LP     H LRH+FA H + +GG
Sbjct: 206 ------IALDGF-----KFFSDCYFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGG 254

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKN 305
           ++ ++Q ILGH  +  T  Y ++  ++
Sbjct: 255 NILALQKILGHHDIKMTMRYAHLAPEH 281


>gi|313678343|ref|YP_004056083.1| site-specific recombinase, phage integrase family [Mycoplasma bovis
           PG45]
 gi|312950487|gb|ADR25082.1| site-specific recombinase, phage integrase family [Mycoplasma bovis
           PG45]
          Length = 306

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 12/152 (7%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY 213
           +++L+   GLR SEA++LTP +    +  L +    +       LP     SVRK  L++
Sbjct: 138 LIFLIAKTGLRFSEAVALTPDDFDFTKQLLNVSKTWNYKESGGFLPTKNKSSVRKIQLDW 197

Query: 214 YDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
             +  F      L+   P+F   + K  N  +     R+ ++   +P+  + H LRH+ A
Sbjct: 198 QTISRFASLVQGLDKNKPIFV-FKEKIFNSTINDLLARRCKK-ANIPI-ISIHGLRHTHA 254

Query: 271 THLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           + LL  G  + S+   LGH  ++TT QIY ++
Sbjct: 255 SILLYAGVSIASVAKRLGHSSMNTTEQIYLHI 286


>gi|300928761|ref|ZP_07144276.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 187-1]
 gi|300463241|gb|EFK26734.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 187-1]
          Length = 184

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 68/162 (41%), Gaps = 10/162 (6%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAI-- 210
           AR+  ++ L Y  G+RISE L L  Q++  ++  + I+   +    V PL    R+A+  
Sbjct: 12  ARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVER 71

Query: 211 --LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
             LE  +    D    I    F   RG  L+     R IR      G    T  H LRH+
Sbjct: 72  WTLERANWKGADRTDAI----FISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHA 127

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-GGDW 309
               L   G D R IQ  LGH  +  T  YT  N+    G W
Sbjct: 128 CGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLW 169


>gi|270296756|ref|ZP_06202955.1| integrase [Bacteroides sp. D20]
 gi|270272743|gb|EFA18606.1| integrase [Bacteroides sp. D20]
          Length = 382

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 21/163 (12%)

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI-VPLLPSV 206
           + K+++      ++     G+  ++  +LT +NI++ +     Q  G  I+I +P     
Sbjct: 212 QKKYVELSKDIFIFSYLCGGINFTDIANLTQENIVNGRLHYIRQKTGKLIKIGIP--QEA 269

Query: 207 RKAILEYYD-----LCPFDLNLNIQLPLFRG------IRGKPLNPGVFQRYIRQLRRYLG 255
            + I +Y D     L P  LN+ +     +       IRGK          +R L + LG
Sbjct: 270 MQIIKKYTDESNGYLFPI-LNVKVHKTALQKQNRIHKIRGK------VNDILRTLGKRLG 322

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +  + T +  RHSFA+ L  +G ++  I   LGH  L+TTQIY
Sbjct: 323 IEANITTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIY 365


>gi|119473089|ref|ZP_01614864.1| putative site-specific tyrosine integrase/recombinase; may be used
           for the termination of replication of chromosome 2
           [Alteromonadales bacterium TW-7]
 gi|119444591|gb|EAW25904.1| putative site-specific tyrosine integrase/recombinase; may be used
           for the termination of replication of chromosome 2
           [Alteromonadales bacterium TW-7]
          Length = 403

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 80/180 (44%), Gaps = 34/180 (18%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQ--NIM-------DDQSTLRIQGKGDKIRIVPLLPS 205
           RN   L  L G  LRISE LS  PQ   +M       D    LRI GKG+K+R V L   
Sbjct: 219 RNLFTLACLKGLYLRISE-LSERPQWSPVMSHFWQDNDGFWFLRIMGKGNKLRDVTLSDD 277

Query: 206 VRKAILEY--YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR----YLGLPL- 258
             + +  Y  Y   P    ++   PL   IRG+    G+  R IR+L +    Y    L 
Sbjct: 278 FVEYLKRYRLYRGLPALPRVDEAEPLVHKIRGQG---GMTVRQIRRLVQQSFDYAQQSLL 334

Query: 259 ------------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKN 305
                       + TAH LRH+ ATH  +    L+ +   LGH +++TT QIY   N K 
Sbjct: 335 DDGFKDDAEQLGAATAHWLRHTGATH-DAQTRPLKHLSEDLGHAKIATTDQIYIQTNIKE 393


>gi|194466593|ref|ZP_03072580.1| integrase family protein [Lactobacillus reuteri 100-23]
 gi|194453629|gb|EDX42526.1| integrase family protein [Lactobacillus reuteri 100-23]
          Length = 370

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 66/154 (42%), Gaps = 12/154 (7%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQ--------STLRIQGKGDKIRIVPLLPSVR--KAIL 211
            LY  GLR  EA +L P +I++          STL  + K    +       V   K  L
Sbjct: 206 FLYQTGLRFGEAAALIPNDIIEKDGKQVAVINSTLVNKKKQPSPKTAKSNRDVTLPKRAL 265

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           E       + N   Q     G  G P+N      ++R+ ++ L +   TT HT RH+  +
Sbjct: 266 EIIHDEEKEAN-GTQFIFSSGRYGYPMNNTTLNDWLREAKKELNIQKITTVHTFRHTHIS 324

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
            L   G  L  IQ+ +GH   +TT+ IY +V  K
Sbjct: 325 KLAELGVPLYLIQNRVGHKDATTTKDIYLHVTKK 358


>gi|293115748|ref|ZP_06604584.1| transposase [Butyrivibrio crossotus DSM 2876]
 gi|292808521|gb|EFF67726.1| transposase [Butyrivibrio crossotus DSM 2876]
          Length = 360

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 93/210 (44%), Gaps = 54/210 (25%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---------------GKGDK-IRIVPL 202
           ++Y+L+  G+RISE  SLT ++I  +  T+ I                 K D   R++P+
Sbjct: 154 VVYILFHTGMRISEFCSLTLKDIDLENRTVNIDHQLQRTSDMWYIIETTKTDAGTRVLPI 213

Query: 203 ----------------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ-R 245
                            P V K+I  Y     +D N            G PL    +Q R
Sbjct: 214 TEDVAQMFQVIIEDRNAPKVEKSIDGYSGFLFYDDN------------GMPLVAMHWQHR 261

Query: 246 YIRQLRRY-----LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYT 299
           +   + RY     + +P + T H  RH++ +++  +G + +++Q ++GH  +S T  +YT
Sbjct: 262 FNHMVGRYNDIYRVQMP-NITPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNVYT 320

Query: 300 NVNSKNGGDWM--MEIYDQTHPSITQKDKK 327
           ++   +  + +  ME + +    + QK++K
Sbjct: 321 HIGFDDAEEKLKRMEEFRKAQAEVEQKNEK 350


>gi|282892377|ref|ZP_06300731.1| hypothetical protein pah_c249o001 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497832|gb|EFB40192.1| hypothetical protein pah_c249o001 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 119

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 30/42 (71%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           + HT+RH+ ATHLL  G D+ +I++ LGH  ++TT IY  V+
Sbjct: 52  SPHTIRHTTATHLLHAGVDINTIRAWLGHVSINTTNIYVEVD 93


>gi|265763064|ref|ZP_06091632.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
 gi|263255672|gb|EEZ27018.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
          Length = 380

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 30/155 (19%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           A L+  + CGLR S+ ++LT  N+   +   + +     K + +  LP  ++A+      
Sbjct: 229 AFLFSCF-CGLRHSDIVALTWGNLKKGKVGKMELHMTQQKTQEILSLPLSKEALK----- 282

Query: 217 CPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLR---------RYLGLPLSTTAHTLR 266
                    QLP    +RGK P    VF+  I   R            G+    T H+ R
Sbjct: 283 ---------QLP----VRGKVPDTEKVFKGLISLGRTNEILPKWAAKAGIQKHITFHSAR 329

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H+ AT +++ G DL ++  +LGH  + TTQIY  +
Sbjct: 330 HTHATMMITLGADLYTVSKLLGHTNIQTTQIYAKI 364


>gi|307243898|ref|ZP_07526023.1| site-specific recombinase, phage integrase family
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492720|gb|EFM64748.1| site-specific recombinase, phage integrase family
           [Peptostreptococcus stomatis DSM 17678]
          Length = 357

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 117/289 (40%), Gaps = 37/289 (12%)

Query: 31  LSKLTLQSY-ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           LS ++L+ + E   R   IFL  Y              Y E+    S R   +  ++SL 
Sbjct: 57  LSDISLEDFAEISARDINIFLGDYCNR----------YYKEVN---SDRVLYENNNKSLA 103

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE---KQALTLVDNVL---- 142
           R  S + +  K+L +     +        +K     P A+      +  T++D V     
Sbjct: 104 RKKSSLSTLFKFLYRNGQLKDDISGGFNPIKLPKPQPDAIKRLEIDEVATMLDVVENGNG 163

Query: 143 LHTSHETKWIDA--RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           L    +  W+    R+ AIL L    GLR++E   L   +    +    I  K  K  ++
Sbjct: 164 LTDKEKDYWLKTKLRDKAILVLFITYGLRLNELRELNISSFNFSRGEFMIYRKRGKEVLM 223

Query: 201 PLLPSVRKAILEYYDL---CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRYLGL 256
           P+  +  + + +Y D       D+       LF  ++ K +      R IR L ++Y  +
Sbjct: 224 PINEACERVVKDYIDYERPKSSDIEEEYLDALFLSLQKKRMT----SRSIRDLVKKYTSI 279

Query: 257 PLSTT------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            + T+       H LR + AT L+  G  +  +Q+++ H  ++TTQ+Y 
Sbjct: 280 AMKTSRDKGYSPHKLRATAATSLIETGFSIYDVQNLMDHDNVTTTQLYA 328


>gi|256850691|ref|ZP_05556116.1| Lj965 prophage integrase [Lactobacillus crispatus MV-1A-US]
 gi|256712559|gb|EEU27555.1| Lj965 prophage integrase [Lactobacillus crispatus MV-1A-US]
          Length = 379

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 72/171 (42%), Gaps = 36/171 (21%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ------------------------GKGDKI 197
           +L   G+R SEA++L   +   +  T+ IQ                         KG++ 
Sbjct: 207 ILATTGIRKSEAIALHWSDFDYEHKTIHIQRTTAYKLKIKGNGEIETNDYGTQIPKGNET 266

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVP+   V +  L     C  DLN     PL F   +G         ++ +Q+      
Sbjct: 267 RIVPMSDLVYEISLH----CRKDLN-----PLVFHNTKGDYYRSSKADKWKKQIYEKNPN 317

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNG 306
               T H LRHSFAT    NG ++  ++++LGH  L  T   YT+  +KNG
Sbjct: 318 LKKITVHGLRHSFATIANDNGWNMVDVKNVLGHKSLDLTLGTYTHT-TKNG 367


>gi|29826699|ref|NP_821333.1| integrase/recombinase [Streptomyces avermitilis MA-4680]
 gi|29603795|dbj|BAC67868.1| putative tyrosine-family recombinase/integrase [Streptomyces
           avermitilis MA-4680]
          Length = 380

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 82/196 (41%), Gaps = 38/196 (19%)

Query: 155 RNSAILYLLYGCGLRISEALSL-------TPQ-------NIMDDQSTLRIQGKGDKIR-I 199
           R++ +  ++YG GLR +E   L        P+        +++ +     +G+  K R +
Sbjct: 186 RDATLFKVIYGWGLRRTETARLDTFDWYRNPKAKEFGRFGMLEVRYGKSSRGQPPKRRSV 245

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI----------RGKPLNPGVFQRYIRQ 249
              +P   +A+ +Y          NI+ P F+G           RG  L+          
Sbjct: 246 CSTMPWAVEAVEDY--------TTNIR-PRFKGHDRSKALWLSERGTRLSAKEIDERFSV 296

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            R+ L L      H LRHS+ TH + +G D   IQ  +GH   STT +YT V+    GD+
Sbjct: 297 YRKALKLDEDLVPHCLRHSYVTHSIEDGADPVFIQQQVGHEYASTTALYTGVS----GDF 352

Query: 310 MMEIYDQTHPSITQKD 325
              +  +   S  Q+D
Sbjct: 353 ANTMMRKAIDSALQRD 368


>gi|256060768|ref|ZP_05450930.1| Phage integrase [Brucella neotomae 5K33]
 gi|261324757|ref|ZP_05963954.1| phage integrase [Brucella neotomae 5K33]
 gi|261300737|gb|EEY04234.1| phage integrase [Brucella neotomae 5K33]
          Length = 308

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 17/146 (11%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
            L   G R+ EA+ LT  +I + + T  +  K ++ R VPL    RKA        P   
Sbjct: 167 FLVDTGCRLGEAIGLTWNDIQEQRVTFWVT-KSNRSRTVPLTRRARKA--------PHIP 217

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNGGD 279
              ++ P         LN   F++   + +  +GL        H LRH+ A+ L+  G D
Sbjct: 218 RERLKGPF------SMLNQVRFRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVRGGID 271

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKN 305
           +R +Q  LGH  L  T  Y ++ + +
Sbjct: 272 IRRVQMWLGHQTLQMTMRYAHLATHD 297


>gi|239906103|ref|YP_002952842.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239795967|dbj|BAH74956.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 183

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 58/152 (38%), Gaps = 5/152 (3%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAIL 211
           +AR+   L L++  GLR+SEA  L    +  +   L +      +    PL     +AI 
Sbjct: 26  EARDRCFLLLMFRHGLRVSEACGLVLSQVDTESRVLHVARLKKGLSTTQPLRADELRAIK 85

Query: 212 EYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            +  D      + +     F   R    +       IR      GLPL    H LRH+  
Sbjct: 86  AWLTDRAKMKPDTD---SFFVSERRTAWSRKTAWLAIRHYGEVAGLPLPAHPHMLRHACG 142

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             L   G D R IQ  LGH  +  T  YT  N
Sbjct: 143 FALADQGADTRLIQDYLGHRNIQHTVRYTATN 174


>gi|163849617|ref|YP_001637660.1| integrase family protein [Methylobacterium extorquens PA1]
 gi|163661222|gb|ABY28589.1| integrase family protein [Methylobacterium extorquens PA1]
          Length = 189

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 67/157 (42%), Gaps = 10/157 (6%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------GKGDKIRIVPLLPSVR 207
           RN A L L Y  GLR+ E  SL   N++D    +R Q        KG   R+V +   +R
Sbjct: 27  RNRAALMLSYLAGLRVGEIASLQWGNLVDVDGKVREQLRLSATVTKGGHARVVFMNARLR 86

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           K I ++              PL    +    +     + +R      GL    ++H+ R 
Sbjct: 87  KEIEQFR--TSLSATPAASQPLLITQKRTRFSANTLCQLMRGWYDLAGLD-GGSSHSGRR 143

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            F T L  +G   ++I  + GH  LSTTQ Y +VN +
Sbjct: 144 WFITRLAHSGISPKAIMMLAGHRHLSTTQRYIDVNDE 180


>gi|52141019|ref|YP_085810.1| integrase/recombinase [Bacillus cereus E33L]
 gi|51974488|gb|AAU16038.1| integrase/recombinase [Bacillus cereus E33L]
          Length = 322

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 85/175 (48%), Gaps = 12/175 (6%)

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDK 196
           N+LL     T++I+ R++A + L+Y  G+R+     L  +++  +   LRI G   K  +
Sbjct: 140 NLLLSILDLTRFIELRDAASVLLMYQTGIRVGTLSQLEHKHVNLENKVLRIDGGIIKNHE 199

Query: 197 IRIVP---LLPSVRKAILEYYDLCPFDLNL-NIQLPLFRG---IRGKPLNPGVFQRYIRQ 249
              +P   +L  V  A+++  D+   + ++ N  L + +    I   P N  + +R  + 
Sbjct: 200 SIHLPFDDVLARVLGALMKQNDIIRKECHIKNDYLFITKNGGRIATSPTNNNITKRLSKH 259

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            + Y GL  +   H LR  FA +LL  G ++  I   LGH  L+ T  Y +++ +
Sbjct: 260 SKDY-GLK-NINPHALRRGFAKNLLKKGANIALISKALGHSDLAVTTRYLHLDKE 312


>gi|320529667|ref|ZP_08030746.1| phage integrase, SAM-like domain protein [Selenomonas artemidis
           F0399]
 gi|320138028|gb|EFW29931.1| phage integrase, SAM-like domain protein [Selenomonas artemidis
           F0399]
          Length = 352

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 120/284 (42%), Gaps = 30/284 (10%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T  +YE   R   +FL +  E+   +  +  +   +IR ++ + R       +L    + 
Sbjct: 68  TRDTYELAIR---LFLRWCVEQ--GLHPLNDIRDYQIRVYMEEMRRSNYSAATLMIKGAA 122

Query: 95  IKSFLKYLKKRKITTESNI--LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           I++F K  ++     E+    L +RN       P+ L+E      VD +    ++  +  
Sbjct: 123 IRAFYKVAQRLSFIAENPCADLQLRN-------PQHLDEDYKYLTVDQIGEICAYLKEDK 175

Query: 153 DA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR- 207
           DA    RN  I+YL+   GLR+ E + L+ ++I   +  + I+GKG    I P   ++  
Sbjct: 176 DALKRLRNLLIVYLMGVEGLRVVEVMRLSDEDIDWQRGRIEIRGKGHAGLIYPCEETLEL 235

Query: 208 -KAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL---GLPLSTT 261
            KA LE     P +  L   I        +G+    G+  RY+  + R L   GL     
Sbjct: 236 LKAYLEERGAVPQENRLTPTIISCSSNNAQGRISRVGI--RYV--INRALTAAGLKQPGY 291

Query: 262 A-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           A H  RHS  T+L     DLR +Q  L       T  Y +V+ +
Sbjct: 292 ACHLFRHSCGTNLYQETKDLRVVQETLRQRSPKVTAKYAHVHDR 335


>gi|268611812|ref|ZP_06145539.1| phage integrase family site specific recombinase [Ruminococcus
           flavefaciens FD-1]
          Length = 366

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 20/164 (12%)

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------GKGDKIRI 199
           S+  K +D  N A+L  L+  GLRI E   L  ++I  +++TL ++       +  K ++
Sbjct: 186 SYLIKNMDRTNLAVLLCLF-TGLRIGELCGLKWEDIDFEKNTLSVKRTVQRVSRNGKSQV 244

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG--------KPLNPGVFQRYIRQLR 251
           +   P  R +I       P  + +   L  FR I          KP  P   Q   + + 
Sbjct: 245 IIGSPKSRTSI----RTVPIPIFMMALLRKFRSIDSLFVITNLSKPTEPRTMQNRFKAIL 300

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           +  G+  +   H+LRH++AT  +  G D +++  +LGH   S T
Sbjct: 301 KLCGIR-NVNFHSLRHTYATVCIEKGFDPKALSELLGHADASIT 343


>gi|239831475|ref|ZP_04679804.1| Tyrosine recombinase xerC [Ochrobactrum intermedium LMG 3301]
 gi|239823742|gb|EEQ95310.1| Tyrosine recombinase xerC [Ochrobactrum intermedium LMG 3301]
          Length = 308

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 21/148 (14%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI-LEYYDL-CPF 219
            L   G R+ EA+ +T  ++ D + T  +  K ++ R VPL    RKA  + +  L  PF
Sbjct: 167 FLVDTGCRLGEAIGVTWNDVQDQRVTFWLT-KSNRSRTVPLTRRARKAAHIPHEKLKGPF 225

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNG 277
            +                LN   F++   + +  +GL        H LRH+ A+ L+  G
Sbjct: 226 SM----------------LNQVRFRQIWNEAKMEVGLGTDDQVVPHILRHTCASRLVRGG 269

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            D+R +Q  LGH  L  T  Y ++ + +
Sbjct: 270 IDIRRVQMWLGHQTLQMTMRYAHLATHD 297


>gi|210616662|ref|ZP_03291167.1| hypothetical protein CLONEX_03388 [Clostridium nexile DSM 1787]
 gi|210149730|gb|EEA80739.1| hypothetical protein CLONEX_03388 [Clostridium nexile DSM 1787]
          Length = 296

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 84/200 (42%), Gaps = 25/200 (12%)

Query: 38  SYECDTRQFLIFLAFYTEE-------KITIQTIRQLSYTEIRAFIS---------KRRTQ 81
           SY  D R F  FL     E        I+   + QL+ ++I  F+            R Q
Sbjct: 48  SYAYDLRVFFNFLKASNPELSSVKIKDISCLVLDQLTPSDIEEFMEYLKYYEDPETNRQQ 107

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLVD- 139
                 + R LS ++    YL KR++  ++ + ++ ++ K +  P   L++++   L+D 
Sbjct: 108 TNNVLGIARKLSSLRGLYNYLYKRQMI-KNKVTDLVDMPKLHEKPIVRLDQEEITNLLDY 166

Query: 140 ------NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                 N+  H     K    R+ AI+ LL G G+R+SE + L   +I        I  K
Sbjct: 167 MESCGENLTSHQKSYYKKTILRDLAIITLLLGTGIRVSECVGLDISDIDFRNDGFHITRK 226

Query: 194 GDKIRIVPLLPSVRKAILEY 213
           G    I+   P V  A+L Y
Sbjct: 227 GGDESIIYFGPEVEMALLNY 246


>gi|146310998|ref|YP_001176072.1| phage integrase family protein [Enterobacter sp. 638]
 gi|145317874|gb|ABP60021.1| phage integrase family protein [Enterobacter sp. 638]
          Length = 339

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 20/147 (13%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           ++ +    G R  EA++LT   +   + T  ++ KG K R +P+   + + I        
Sbjct: 197 VVKICLSTGARWREAVNLTRSQVTKYRITF-VRTKGKKNRSIPISKELYEEI-------- 247

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
                 I L  F     K      FQ      +  + LP     H LRH+FA H + +GG
Sbjct: 248 ------IALDGF-----KFFTDCYFQFLSVMDKTSIVLPRGQLTHVLRHTFAAHFMMSGG 296

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKN 305
           ++ ++Q ILGH  +  T  Y +++ ++
Sbjct: 297 NILALQRILGHHDIKMTMRYAHLSPEH 323


>gi|322836431|ref|YP_004215808.1| integrase [Rahnella sp. Y9602]
 gi|321170984|gb|ADW76681.1| integrase family protein [Rahnella sp. Y9602]
          Length = 257

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 30/170 (17%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-------TL--RIQGKGDK------I 197
           D R       ++  G R +EAL+LTP +++  Q+       TL  R +G+G        +
Sbjct: 59  DLRQRTFFETMWNTGARPNEALALTPASLLFKQAMPAIKLPTLKQRTRGRGRPKESELPV 118

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG-- 255
           R VP+  +  +   E        L + +  PL+      P++P    R++++     G  
Sbjct: 119 RDVPVWDATYR---ERMTSLVATLKIRVDEPLW------PVSPDTISRWLKRAIDAAGRD 169

Query: 256 -LPLSTTA---HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            +  S T     + RHSFA H+L N    + +Q+++GH    +T++YT +
Sbjct: 170 GVTFSITPIIPKSFRHSFAMHILFNRIHPKVLQTLMGHKSFKSTEVYTKL 219


>gi|169827497|ref|YP_001697655.1| integrase/recombinase [Lysinibacillus sphaericus C3-41]
 gi|168991985|gb|ACA39525.1| integrase/recombinase [Lysinibacillus sphaericus C3-41]
          Length = 345

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 122/283 (43%), Gaps = 35/283 (12%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GL   T+ SY  + ++F+        E   ++ + +++  +I  ++S      + D SL+
Sbjct: 68  GLRPRTIDSYNYNFKRFV--------EVTEVEYLHEINNEKIYQYLSS--FDNVKDTSLQ 117

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             L  IK+ L               N++ +K + S+  A  EK+ LT    VLL    ++
Sbjct: 118 GRLKQIKAVLSKCHDNGWYNSKFWKNIK-IKVNTSVKEAATEKE-LT----VLLSLLDKS 171

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPL---- 202
            +   R+S  + LLY  G+RI    +L  QNI  D   L++QG   K  +  I+PL    
Sbjct: 172 TYSGLRDSIAILLLYKTGIRIKTLGALREQNIDFDNMLLKLQGEIMKAHRPLILPLDDEM 231

Query: 203 ------LPSVRKAI-LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
                 L S+   +  E+ +   +    NI +P+   +   P N      ++   +  L 
Sbjct: 232 CTLLRELISINDYVRKEHREKNDYIFLSNIGVPISNTV--SPSNLIAKNLWVYSKKWNLK 289

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              +   H++R  +A +L+  G D+  +   L H  LSTT  Y
Sbjct: 290 ---NVNPHSIRRLYAQNLVKRGADINLVSHALAHSDLSTTSKY 329


>gi|256842148|ref|ZP_05547653.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298374987|ref|ZP_06984944.1| integrase [Bacteroides sp. 3_1_19]
 gi|256736464|gb|EEU49793.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298267487|gb|EFI09143.1| integrase [Bacteroides sp. 3_1_19]
          Length = 433

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 7/86 (8%)

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQ----LRRYLG--LPLSTTAHTLRHSFATHL-LS 275
           L+I L +    RG+     VF  Y R+    L R LG       T H  RH+F TH+ LS
Sbjct: 307 LDIPLQIIEKYRGQRSGDKVFNIYARRYFILLTRELGQVYGFDLTFHQARHNFGTHITLS 366

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNV 301
            G  + ++  ++GH  +STTQIY  V
Sbjct: 367 LGVPIETVSRMMGHTSISTTQIYAQV 392


>gi|300778066|ref|ZP_07087924.1| integrase [Chryseobacterium gleum ATCC 35910]
 gi|300503576|gb|EFK34716.1| integrase [Chryseobacterium gleum ATCC 35910]
          Length = 416

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 28/45 (62%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            T HT RH+F T  L+ G  L S+  ++GH  +STTQIY  + S+
Sbjct: 348 VTFHTARHTFGTMFLTEGVPLESLSKMMGHKNISTTQIYAKITSQ 392


>gi|153930721|ref|YP_001393390.1| putative integrase family protein [Yersinia pseudotuberculosis IP
           31758]
 gi|152958262|gb|ABS45724.1| putative integrase family protein [Yersinia pseudotuberculosis IP
           31758]
          Length = 376

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 17/168 (10%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAIL 211
           +R   +  LLY  G+R +EA +    +++   +T  L++ GKG+K+R+V +   + K ++
Sbjct: 192 SRYRWVFALLYHSGIRCAEAANALMSDLVRKNNTWSLKVTGKGNKMRLVTVNSLLLKELI 251

Query: 212 EYY-DLCPFDL-NLNIQLPLFRGI---RGKPLNPGVFQRYIRQLRRYLGLPL-------- 258
            Y   L   D  + +   PL   I   R   +        I+++   +            
Sbjct: 252 HYRRSLLLTDYPSSHDDTPLIVSIQKNRQGSMTTRTLSSLIKEVTELVCADCQDDQITRQ 311

Query: 259 --STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             + T H LRH+ ATH    G  L + Q  LGH    TT+IY   +++
Sbjct: 312 IETMTTHWLRHTNATHRFMAGASLETTQDELGHADPRTTRIYAKTSNE 359


>gi|308172828|ref|YP_003919533.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens DSM 7]
 gi|307605692|emb|CBI42063.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens DSM 7]
          Length = 182

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 13/169 (7%)

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           K +  R+  +  L    GLRIS+ L+L   ++         +GK  K +      +++KA
Sbjct: 18  KALRGRDLLLFTLGINSGLRISDILALKVGDVRGKDFVAITEGKTKKSKRFFFNAAIKKA 77

Query: 210 ILEYYDLCPFDLNLNIQL-PLFRGIRG--KPLNPGVFQRYIRQLRRYLGLPLSTTA-HTL 265
           +    DL P + N +  L P  +G +   +    G+    +   R  L   L T   H+L
Sbjct: 78  VA---DLIPTEANDDDWLFPSRKGSKAITRVRAYGILNEAVE--RAGLSEKLGTIGCHSL 132

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           R +F  H   NG DL  +QSI  H + S T  Y  +N     D + E+Y
Sbjct: 133 RKTFGYHAYKNGTDLTLLQSIFNHSKQSVTLRYIGINQ----DRIDEVY 177


>gi|293393584|ref|ZP_06637894.1| phage integrase family site-specific recombinase [Serratia
           odorifera DSM 4582]
 gi|291423919|gb|EFE97138.1| phage integrase family site-specific recombinase [Serratia
           odorifera DSM 4582]
          Length = 335

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 22/149 (14%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           D R  A+L L    G R  E+ +L  + +   + T  ++ K  K R VP+   +   I  
Sbjct: 189 DDRRVALLCL--STGARWGESSTLRGEQVNHGRVTF-LKTKNGKKRTVPISEELEGEI-- 243

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                      +   PLF+      ++   F   ++Q++    LP     H LRH+FA+ 
Sbjct: 244 ---------KTSDTGPLFK------VDYENFCERLKQVKP--DLPRGQATHVLRHTFASW 286

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            + NGG++ ++Q ILGH  +  T +Y ++
Sbjct: 287 FMMNGGNIIALQQILGHASIQQTMVYAHL 315


>gi|312870846|ref|ZP_07730951.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 3008A-a]
 gi|311093536|gb|EFQ51875.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 3008A-a]
          Length = 329

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 111/253 (43%), Gaps = 29/253 (11%)

Query: 61  QTIRQLSYTEIRAFISK----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           + +R++   ++R ++++    + + K+   +++R LS   SF  +L+      + N +  
Sbjct: 88  KNVREMETDDLRTYLTEYQQEKNSSKVTVDNIRRILS---SFFSWLE------DENYILK 138

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVL--LHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
              ++ + +  AL  K+  T  D  L  +H S +    + R+ A++ +L   G+R+ E +
Sbjct: 139 SPARRIHKVKAALTIKETYT--DEALEKMHDSCD----EPRDLALIDILASTGMRVGELV 192

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
            L   +I  ++    + GKG K R+V      +  +L Y      D        LF  +R
Sbjct: 193 LLNRDDINFEERECVVFGKGSKERMVYFDARTKIHLLTYLQGRTDD-----NPALFVSLR 247

Query: 235 G--KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                L  G  +  +R+L   L +      H  R + AT  +  G  +  +Q +LGH R+
Sbjct: 248 APHDRLKIGGVECRLRELGNKLNIE-KVHPHKFRRTLATMAIDKGMPIEQLQQLLGHKRI 306

Query: 293 STTQIYTNVNSKN 305
            TT  Y  V   N
Sbjct: 307 DTTLRYAMVKQSN 319


>gi|255692293|ref|ZP_05415968.1| putative integrase/recombinase [Bacteroides finegoldii DSM 17565]
 gi|260622026|gb|EEX44897.1| putative integrase/recombinase [Bacteroides finegoldii DSM 17565]
          Length = 341

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 87/189 (46%), Gaps = 31/189 (16%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI-RIVPLLPSVRKAI---LEY 213
           A+  +LY  G+RI EA+S+  +++   ++ + I+   +K+ R++PL  S+ K +   LEY
Sbjct: 143 ALYRILYATGIRIGEAISIRNRDVDLRRNCIIIRKTKNKMERLIPLSDSLSKVLQQYLEY 202

Query: 214 YDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST------TAHT 264
            +  P     ++  P   L     G+PL+        +++     +P S+        H+
Sbjct: 203 RNKMPLP---DVDAPDKFLLISPSGRPLSSCTVLGGFKKVLEKCNIPCSSNRSGGACIHS 259

Query: 265 LRHSFATH----LLSNGGDLRS----IQSILGHFRLSTTQIYTNVNSKNGGDWMME---- 312
           LRH+FA H    ++  G D+      +   LGH  L  T+ Y  +      D +++    
Sbjct: 260 LRHTFAVHSLAKMVQEGMDIYCALPLLSVFLGHKTLKGTETYVRLTQDMFPDILLKQNTI 319

Query: 313 ---IYDQTH 318
              +Y QT+
Sbjct: 320 TRFVYPQTN 328


>gi|313897143|ref|ZP_07830688.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312958071|gb|EFR39694.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 284

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 10/148 (6%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I+ ++   G+R+SE    T +NI   +  L +  KG KIR + +  S++K I +Y +   
Sbjct: 129 IMEIMGYTGIRLSELQYFTVENI--RKPKLIVHNKG-KIRTIIMPTSLKKKIKKYIEEQG 185

Query: 219 FDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSN 276
            +        +F G + G  L+P    + IR++     +  +    H  RH FA   +  
Sbjct: 186 IESGY-----IFPGKKEGAMLHPTTVYKNIRKIAATAKIKKTKAHPHAFRHLFAVRYIEE 240

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           GG    +  ILGH +L TT IYT    K
Sbjct: 241 GGQPSDLADILGHSQLETTAIYTRTTDK 268


>gi|326789825|ref|YP_004307646.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326540589|gb|ADZ82448.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 376

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 75/189 (39%), Gaps = 35/189 (18%)

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           K+ L + +N+    SH  K          Y+  GCGLR SE  +LT  +I  + + +R+ 
Sbjct: 171 KKLLEIYENLSTKPSHMHK-------CAFYIALGCGLRNSEIRALTLDDIDFENNIIRVN 223

Query: 192 GKGDK-------------------IRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPL 229
            +  K                   IR +     V  AI  Y    D  P    L      
Sbjct: 224 KQFGKYTEKGKVVEGYITTKSESSIRDIYAPDFVIAAIKNYISTLDCIPLSKQL-----F 278

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           +     KP+       +   + +   LP+    H LRH  AT L S G +++S+ + +GH
Sbjct: 279 WSARTNKPVGRQCLSTFFTNILKNNNLPV-IDFHDLRHLHATLLASKGVNMKSLSNRMGH 337

Query: 290 FRLSTTQIY 298
            +L TT IY
Sbjct: 338 SKLETTNIY 346


>gi|298528847|ref|ZP_07016250.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298529858|ref|ZP_07017260.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298529885|ref|ZP_07017287.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298531268|ref|ZP_07018668.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298531275|ref|ZP_07018675.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508878|gb|EFI32784.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508885|gb|EFI32791.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509232|gb|EFI33136.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509259|gb|EFI33163.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510283|gb|EFI34186.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 322

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 107/255 (41%), Gaps = 34/255 (13%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+  R   K    ++   +   ++F  YL +      + + ++    ++  +P   + +Q
Sbjct: 55  FLGFRDGIKGSPATVNNVIQATRNFFAYLHRTGCCEHNPVQDLPAKTENAFIPFIFSPEQ 114

Query: 134 ALTLVDNV---LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
              L+  V   +  +  +   +D      L L   CGLR+SE L+L  ++    Q T+ I
Sbjct: 115 VEQLLQGVQSQIRRSREKCFLVDMGIYIALMLQARCGLRMSEPLNLGLEHFDPVQGTIYI 174

Query: 191 QG-KGDKIRIVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFR-GIRGKPLNPGVFQ 244
           Q  K  K R++P+    +K +  +  L    C     L   LP F+  +R   + P VF 
Sbjct: 175 QKTKFHKDRLIPIPWEAQKELDNFLSLRDALCCTSPYL---LPGFKNALRTNQVYP-VFH 230

Query: 245 RYIRQL-----RRYL-----GLPLSTTAHTLRHSFATHLLSNGGD--------LRSIQSI 286
           R +R+      RR +     G P   T H+LRHSFA + L    D        L  + + 
Sbjct: 231 RAVRETGIHAPRRIIANMVFGHP---TPHSLRHSFAVNTLKAARDRGRDPQAVLPVLSAY 287

Query: 287 LGHFRLSTTQIYTNV 301
           +GH +   T +Y  V
Sbjct: 288 MGHSKYRYTALYLKV 302


>gi|294637852|ref|ZP_06716122.1| type 1 fimbriae regulatory protein FimE [Edwardsiella tarda ATCC
           23685]
 gi|291088970|gb|EFE21531.1| type 1 fimbriae regulatory protein FimE [Edwardsiella tarda ATCC
           23685]
          Length = 185

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 3/153 (1%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILE 212
           AR+  +LY++Y  GLR+SE L++T  ++  +   + I+   + +    P+     K++  
Sbjct: 25  ARDRCLLYMMYMHGLRVSELLNMTMSSLDLESGEVYIRRLKNGLSTTHPIQDEEGKSLAA 84

Query: 213 YYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           +       LN  +  P LF   R   L+       +R+      LP+    H LRH+   
Sbjct: 85  WLQRRHEVLN-GVSYPWLFISKRKTRLSRQQVYALVRRYGESANLPIRLHPHVLRHACGY 143

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            L   G D R IQ  LGH  +  T  YT  N K
Sbjct: 144 ALADQGIDTRLIQDYLGHRNIRHTVHYTASNCK 176


>gi|283786567|ref|YP_003366432.1| fimbrial regulatory protein FimE [Citrobacter rodentium ICC168]
 gi|282950021|emb|CBG89650.1| fimbrial regulatory protein FimE [Citrobacter rodentium ICC168]
          Length = 198

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 66/157 (42%), Gaps = 2/157 (1%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEY 213
           R+  ++ L +  G+RISE L L  +++  ++  + I+  K     I PL    R+A+  +
Sbjct: 27  RDYCLILLAFRHGMRISELLDLHYRDLDLNEGRINIRRLKNGFSTIHPLRFDEREAVERW 86

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                     N    +F   RG PL+     R IR      G    T  H LRH+    L
Sbjct: 87  SRERAAWRGANRTDAVFISRRGTPLSRQQAYRIIRAAGIDAGTVTHTHPHMLRHACGYEL 146

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-GGDW 309
              G D R IQ  LGH  +  T  YT  N+    G W
Sbjct: 147 AERGTDTRLIQDYLGHRNIRHTVRYTASNAARFAGLW 183


>gi|212709287|ref|ZP_03317415.1| hypothetical protein PROVALCAL_00322 [Providencia alcalifaciens DSM
           30120]
 gi|212688199|gb|EEB47727.1| hypothetical protein PROVALCAL_00322 [Providencia alcalifaciens DSM
           30120]
          Length = 343

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 19/135 (14%)

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
            G R SEA  +  ++I+  + TL  + K  K R +PL  +V   + +  D   F      
Sbjct: 207 TGTRWSEAKRVKCEHIVHKRVTL-FKTKNGKKRTIPLSQNVIDIVTK--DRTAF------ 257

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
              LF     K      F+  +R+++    +P     H +RH+F TH +  GG++ ++Q 
Sbjct: 258 ---LFPNASYKD-----FRNALRKVKP--DIPKGQATHIMRHTFGTHFMFRGGNIVTLQK 307

Query: 286 ILGHFRLSTTQIYTN 300
           ILGH ++  T  Y +
Sbjct: 308 ILGHSKIEQTMTYAH 322


>gi|53720954|ref|YP_109940.1| putative bacteriophage integrase [Burkholderia pseudomallei K96243]
 gi|52211368|emb|CAH37357.1| putative bacteriophage integrase [Burkholderia pseudomallei K96243]
          Length = 284

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 111/256 (43%), Gaps = 27/256 (10%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           + I  L   ++R +++ R    + + ++KR L  + + + +++      E +  ++ N  
Sbjct: 36  RAISALKRVDVRKYVAVRLADGVQESTVKRELKFLSAAINFVR-----LECDCSDLPNPA 90

Query: 121 KSNSL------PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           +S  L       R ++  +A  L+    L  S   K     N   L L  GC  R +E L
Sbjct: 91  QSLGLNGGEHRVRWISRAEASALI----LSASAYAKRPHLANFVRLALSTGC--RKNELL 144

Query: 175 SLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLF 230
           +L    +  + S LR+     K  K R+VPL  +   A+ +  D      + +    P +
Sbjct: 145 ALDWCRVDFEHSFLRLNAEHTKNGKRRVVPLNSAALSALRDQRDWVERKCSGSEWVFPAW 204

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
            G R + L  G      R     +G+  +   H LRH+FA+ L+  G  L  ++ +LGH 
Sbjct: 205 SGKRIQTLQKGFNAACAR-----VGIE-NFRIHDLRHTFASWLVMEGVSLYVVKDLLGHS 258

Query: 291 RLSTTQIYTNVNSKNG 306
            ++ T+ Y +++   G
Sbjct: 259 SITVTERYAHLSPDQG 274


>gi|333005231|gb|EGK24751.1| phage integrase family protein [Shigella flexneri VA-6]
          Length = 249

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 72/169 (42%), Gaps = 32/169 (18%)

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRIQGKGD----- 195
           HT+H T   +AR  A L  +   G R +E   LT ++I+   +    + I   GD     
Sbjct: 74  HTAHTTS--EARRWASLVSVV-TGARSAEVCHLTKRDIVTLDNGLVCIDINEDGDGKSVK 130

Query: 196 ---KIRIVPLLPSVR----KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI- 247
               +R+VPL   V     ++ L++ D+ P D       PLF       + P  +  +  
Sbjct: 131 NKHSVRLVPLTDGVHGFDLESFLKWVDMQPDDG------PLF------GMTPSAYSSWFN 178

Query: 248 -RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            R L   LG     + H+LRH  AT +   G +L   Q ILGH   S T
Sbjct: 179 SRVLTEALGDSQDVSLHSLRHWLATRMKERGVNLVDAQGILGHSSQSIT 227


>gi|332523022|ref|ZP_08399274.1| site-specific tyrosine recombinase XerS [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314286|gb|EGJ27271.1| site-specific tyrosine recombinase XerS [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 356

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 117/304 (38%), Gaps = 68/304 (22%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRT----------QKIGDRSLKRSLSGIKSFLKYLKKRKI 107
           I + T+ QL+  ++ AF+   R           + +   ++ R+LS + S  KYL +   
Sbjct: 66  IELHTLEQLTKKDMEAFVLYLRERPSLNTYSTKEGVSQTTINRTLSALSSLFKYLTEEVE 125

Query: 108 TTESNILNMRNLKKSNSL--------PRALNEKQALTLVDNVLLHTSHETKWID------ 153
             +      RN+ K  +          RA N KQ L L +     T    ++ID      
Sbjct: 126 NDQGEPYFYRNVMKKVATKKKKETLASRAENIKQKLFLGE----ETMEFLEYIDYGYENN 181

Query: 154 -------------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                         R+ AI+ LL   G+R+SEA++L  +++      + +  KG K   V
Sbjct: 182 LSNRAKSSFRKNKERDLAIIALLLASGIRLSEAVNLDLKDVNLKMMVIEVTRKGGKRDSV 241

Query: 201 PLLPSVRKAILEYY-------------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
            +  S  KA LE Y             D   F       L  +RGI  + ++    ++ +
Sbjct: 242 NV-ASFAKAYLEAYLEIRKKRYKAEKQDQAFF-------LTEYRGIPNR-IDASSIEKMV 292

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV---NSK 304
            +  +     +  T H LRH+ AT L         +   LGH     T +YT++     K
Sbjct: 293 AKYSQ--NFKIRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQK 350

Query: 305 NGGD 308
           N  D
Sbjct: 351 NALD 354


>gi|323466429|gb|ADX70116.1| Phage integrase family site-specific recombinase [Lactobacillus
           helveticus H10]
          Length = 360

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 6/154 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI+ L+ G G+R+SE   +  Q++    + L +  KG +   VP+       I +Y 
Sbjct: 189 RDMAIIALILGTGIRVSECAGVDMQDLNIKDAILDVTRKGGQKDSVPIAEWTLDYIKKYK 248

Query: 215 DLCPFDLNLNIQLPLFRGIR----GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            +       + +   F   R     K +     ++ + +     G PL  T H LRH+ A
Sbjct: 249 KIRAERYMADPKQTAFFLTRWHNQTKRMTTNAIEKMVNKYSASFGHPL--TPHKLRHTLA 306

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + L +   D   +   LG    + T +YT+V+ K
Sbjct: 307 SELYAVTKDQVLVAQQLGQKGTTATDLYTHVDQK 340


>gi|91791345|ref|YP_552295.1| phage integrase [Polaromonas sp. JS666]
 gi|91701226|gb|ABE47397.1| phage integrase [Polaromonas sp. JS666]
          Length = 527

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 106/253 (41%), Gaps = 33/253 (13%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNEKQALTLV 138
           + + ++S  RSL+ + S  +Y         +    +    ++ +   P  +   + L   
Sbjct: 241 RPMAEKSQARSLAVVASLYRYWHNTGYLQGNPAAGLTGGSRAQAGFAPTRMVSSELLARC 300

Query: 139 DNVL---LHTSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMD-------DQ 185
           D  +   L TS   +  DA   R  AI +L    G R++E L+  P   +          
Sbjct: 301 DAFIERSLQTSPPLQTADANVWRRCAIWHLFRFSGARLAE-LAWNPSKALPRVESDKVGA 359

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLC---PFDLNLNIQLPLFRGIRGKPLNP-G 241
            TL + GKG+KIR +P LP++   +L  Y L    P   +   Q+PL  G +   L   G
Sbjct: 360 VTLTVVGKGNKIRQIP-LPTICSHVLLSYRLARGLPELPDTLEQIPLIHGEKAGYLGARG 418

Query: 242 VF----------QRYIRQLRRYLGLPLST-TAHTLRHSFA-THLLSNGGDLRSIQSILGH 289
           ++           R I Q     G  L T + H LRH++A T ++     L + Q++LGH
Sbjct: 419 LYNEVKAVLLAVAREIEQGDPQSGTLLRTVSPHWLRHAYARTLVVDKRVPLPAAQALLGH 478

Query: 290 FRLSTTQIYTNVN 302
             + TT  Y   +
Sbjct: 479 ASVQTTAAYAKTD 491


>gi|327314473|ref|YP_004329910.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|326946304|gb|AEA22189.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 409

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 34/196 (17%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLT 177
           K+    P+AL+ +    + D V+    H +  I AR+      L+ C  G   ++A+S+T
Sbjct: 217 KQEEKTPKALSRESFEKIRDLVI--PEHCSSHILARD----LFLFACYTGTSYADAVSVT 270

Query: 178 PQNIM-DDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
             N+  DD+ +L ++ +  K  +   V LLP   + I +Y D        + +  LF   
Sbjct: 271 RDNLFTDDEGSLWLKYRRKKNELQACVKLLPEALELIEKYND--------DTRPTLF--- 319

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLST----TAHTLRHSFATHL-LSNGGDLRSIQSILG 288
                 P ++   +R+L + L +        T H  RHSFA+ + L  G  + +I  +LG
Sbjct: 320 ------PMLYHPNLRRLMKCLAVLADIKEDLTYHAGRHSFASLITLEAGVPIETICKMLG 373

Query: 289 HFRLSTTQIYTNVNSK 304
           H  L TTQ Y  V  K
Sbjct: 374 HSNLQTTQRYAKVTPK 389


>gi|307323750|ref|ZP_07602960.1| integrase family protein [Streptomyces violaceusniger Tu 4113]
 gi|306891239|gb|EFN22215.1| integrase family protein [Streptomyces violaceusniger Tu 4113]
          Length = 359

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 68/175 (38%), Gaps = 32/175 (18%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR---------IQGKGDKIRIVPLLP 204
           ARN     L+   GLR+SEA  L   +I  D               +G G + R+VPL+ 
Sbjct: 167 ARNYTASKLMSQVGLRVSEACKLDLADIKWDLGRFGKLHVRHGKGARGSGPRERMVPLIN 226

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY----------- 253
              + +  + +      + +   P      G PL P   +      RR            
Sbjct: 227 GADRTLRWFIEDVWGQFDDDHTRP------GAPLFPSERRCADGSSRRVGDDALRGGLKG 280

Query: 254 ------LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                  G     T H LRH  A+ L +NG DL +IQ +LGH  ++TT  Y +V 
Sbjct: 281 AAKAHLPGWGEKLTPHVLRHFCASQLYANGLDLLAIQEVLGHSWIATTMRYVHVQ 335


>gi|296330592|ref|ZP_06873070.1| putative bacteriophage integrase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674640|ref|YP_003866312.1| putative bacteriophage integrase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296152274|gb|EFG93145.1| putative bacteriophage integrase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412884|gb|ADM38003.1| putative bacteriophage integrase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 181

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 12/147 (8%)

Query: 161 YLLYGCG----LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           Y L+  G    LRIS+ L L  +++ +       + K  K R + +L S+++ I EY   
Sbjct: 28  YFLFIFGINSALRISDILPLQVKDVKNKDHLWATESKTKKKRKILILESLKQEIYEYTK- 86

Query: 217 CPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
              D+  N  L  F+ +R  KP++     R +R+     GL    T HTLR +F  H   
Sbjct: 87  ---DMKENEYL--FKSVRTRKPISRIQAYRILREAAAACGLEEIGT-HTLRKTFGYHFYQ 140

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVN 302
              D+  +Q IL H   S T  Y  ++
Sbjct: 141 RTKDIAELQRILNHSSPSITMRYIGID 167


>gi|238753441|ref|ZP_04614804.1| Integrase family protein [Yersinia ruckeri ATCC 29473]
 gi|238708394|gb|EEQ00749.1| Integrase family protein [Yersinia ruckeri ATCC 29473]
          Length = 154

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 22/144 (15%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           ++ +    G R +EA  LT   I   + T  ++ KG K R VP+  ++   +++      
Sbjct: 2   VVKVCLSTGARWNEAEKLTRSQISPHKITF-VRTKGKKNRSVPISKALHDELVK------ 54

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNG 277
                         I+G  L    + R++  +    + LP     H LRH+FA H + +G
Sbjct: 55  --------------IKGDQLFSECYFRFMAAINSTDIKLPKGQLTHVLRHTFAAHFMMSG 100

Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301
           G++  +Q ILGH  +  T  Y ++
Sbjct: 101 GNILVLQRILGHSDIQMTMRYAHL 124


>gi|227872201|ref|ZP_03990566.1| possible phage integrase/recombinase [Oribacterium sinus F0268]
 gi|227841952|gb|EEJ52217.1| possible phage integrase/recombinase [Oribacterium sinus F0268]
          Length = 184

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 68/155 (43%), Gaps = 12/155 (7%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AIL  LY  G+R+ E ++L   +I  ++    + GKG K R V    +  K  L+ Y
Sbjct: 28  RDLAILDFLYSTGIRVGELVNLNISDINFEERECIVFGKGGKERKV-YFDAKAKIHLQNY 86

Query: 215 DLCPFDLN----LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            +   D N    + +  P  R      L     +  +R+L +   L      H  R + A
Sbjct: 87  LVDRIDGNPALFVTLDAPYTR------LKISGVETRMRELGKR-SLVNKIYPHKFRRTMA 139

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           T  +  G  +  +Q ILGH ++ TT  Y  VN  N
Sbjct: 140 TRAIDKGMPIEQVQKILGHSQIDTTMQYAIVNQSN 174


>gi|215485933|ref|YP_002328364.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
 gi|215264005|emb|CAS08346.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
          Length = 350

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 48/196 (24%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--------TKWIDARNSAILYLLYGCGLRISEALS 175
           S P  L   +  T+ +  +   +HE         K  D   + ++ +    G R  E ++
Sbjct: 154 SYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICLSTGARWREDVN 213

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE-----YYDLCPFDL-----NLNI 225
           LT   +   + T  ++ KG K R +P+   + + I+      ++  C F         +I
Sbjct: 214 LTRSQVTKYRITF-VRAKGKKNRSIPISKELYEEIMALDGFNFFTDCYFQFLSVMEKTSI 272

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
            LP     RG+P                         H LRH+FA H + +GG++ ++Q 
Sbjct: 273 VLP-----RGQP------------------------THVLRHTFAAHFMMSGGNILALQK 303

Query: 286 ILGHFRLSTTQIYTNV 301
           ILGH  +  T  Y ++
Sbjct: 304 ILGHHDIKMTMRYAHL 319


>gi|293377828|ref|ZP_06624013.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium PC4.1]
 gi|292643538|gb|EFF61663.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium PC4.1]
          Length = 407

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 71/171 (41%), Gaps = 31/171 (18%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ----GKGDK-----------------IRIV 200
           +++  GLR SEAL L   +I   Q+TL I     G  +K                  R +
Sbjct: 214 IIFDQGLRKSEALGLQWADIDFSQNTLNINRERLGAAEKGPNKGLIITDDTKTPSGTRSL 273

Query: 201 PLLPSVRKAIL-------EYYDLCPF--DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           P+   V+KA+L       + +   P   D    I +  +   +G P+          ++ 
Sbjct: 274 PMTKRVKKALLTLRNQVIKEFGFLPETDDHEAFIFINTYGKNKGIPIRDRTVNGASHRIE 333

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +   LP   T H  RH+FA      G  L  I+  LGH  +STTQ+Y +++
Sbjct: 334 KRASLP-HITVHDGRHTFAARTRQAGIPLEDIKDFLGHKDVSTTQVYAHIS 383


>gi|229006394|ref|ZP_04164069.1| Tyrosine recombinase xerD [Bacillus mycoides Rock1-4]
 gi|228754858|gb|EEM04228.1| Tyrosine recombinase xerD [Bacillus mycoides Rock1-4]
          Length = 44

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 4/46 (8%)

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           + NG DLR++Q +LGH  +STTQIYT+V+       + ++Y Q HP
Sbjct: 1   MENGADLRAVQEMLGHADISTTQIYTHVSKAR----LKDVYKQFHP 42


>gi|297618999|ref|YP_003707104.1| integrase family protein [Methanococcus voltae A3]
 gi|297377976|gb|ADI36131.1| integrase family protein [Methanococcus voltae A3]
          Length = 317

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 8/155 (5%)

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
           +   R++ +L  L+  G R+SE L+   ++       + I    +      +L +  K  
Sbjct: 148 YTQDRDAVLLRTLWDTGCRVSEILNSRLKDYDSKNGVIVITKSKNYTERRVILANDTKEA 207

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQRYIRQLRRY--LGLPLSTTAHT 264
           L Y  +   + N N    LF+ + G+ +N      VF   +++L+    L        H+
Sbjct: 208 LNY--IITKNRNKNDNDYLFQKLNGEQINRNAIYRVFNACVKELKAEGKLAKNRRIVLHS 265

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           +RH    +LL+ G +L  +   +GH R+ TT IY 
Sbjct: 266 IRHGCCVNLLTKGVNLDEVSRYMGHNRVETTMIYA 300


>gi|149184912|ref|ZP_01863229.1| phage integrase [Erythrobacter sp. SD-21]
 gi|148831023|gb|EDL49457.1| phage integrase [Erythrobacter sp. SD-21]
          Length = 384

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 123/290 (42%), Gaps = 31/290 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            WL+    +RG++  T++ Y  +  + +  L              Q     +R    +R 
Sbjct: 103 GWLRQ---DRGVTDETIRRYRAEIERLMPMLGAPA----------QWDAATLRDAFERRS 149

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS--NSLPRALNEKQALTL 137
            +  G  SL  ++  ++S+L++L  R     + +  M ++++   ++LPR ++       
Sbjct: 150 KEIPGSASLLATI--MRSYLRFLIGRGQCRPALLHAMPSVRRYRLSALPRYIDPATI--- 204

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               ++      + ++ R+ AI+ LL   GLR  +   +   +I      L+++GK  + 
Sbjct: 205 --ERIIAACPTGRPVEVRDKAIILLLARLGLRAGDIRDMRLDDIDWRSGHLKVKGKTRRP 262

Query: 198 RIVPLLPSVRKAILEYYDLC-----PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
             +PL   V  AIL Y            L L  Q P FR         G+  R + +   
Sbjct: 263 DRLPLPQGVGDAILAYLAAARPTAIEAHLFLRSQAP-FRPFSSSAEIAGIVARTLER-GG 320

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             GLP  T +H  RHS AT++L +G  L SI +IL H    TT IY   +
Sbjct: 321 IEGLP--TGSHIFRHSLATNMLRSGAGLESIGTILRHSSPETTAIYAKTD 368


>gi|33322490|gb|AAQ06972.1|AF496299_2 integrase/recombinase [Lactobacillus delbrueckii subsp. lactis]
          Length = 173

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 82/178 (46%), Gaps = 10/178 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L+ ER  S  T+ +Y+ D    L     + +E        Q+S  ++  ++   
Sbjct: 5   EQFLSYLKNERSYSPKTVLAYQKD----LAAAKKFWQENGGFPGWDQISRRDLEIYLLAT 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             QK+   +L R LS +KSF + L +R +      + ++  +    LP    + +   ++
Sbjct: 61  -GQKLASSTLSRKLSSLKSFYRLLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQVI 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
            ++     ++ K +  RN AI+ L Y  G+R+SE   L  + +  +   + + GKG+K
Sbjct: 120 RSL-----NDGKPLTVRNRAIVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNK 172


>gi|332876837|ref|ZP_08444592.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332685202|gb|EGJ58044.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 372

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 9/88 (10%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +F G + K L  G  +R++       G+    T H  RHSF +  +  G D+  IQ+ LG
Sbjct: 286 IFEGFKDKMLQ-GPLKRWLSAA----GITKKITFHCTRHSFGSLHVEMGTDMAVIQACLG 340

Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           H  ++TTQIY    SK     M ++ D+
Sbjct: 341 HKNITTTQIY----SKMAAQQMCDVVDK 364


>gi|291530087|emb|CBK95672.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 418

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 135/334 (40%), Gaps = 80/334 (23%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           E++RGL   T ++Y+            +   +I  +T+  L  T+I+ F +        +
Sbjct: 81  ELKRGLKNNTFENYK-------YMYETFVRHQIGSKTVSSLKKTDIKRFYN----YLTDE 129

Query: 86  RSLKRS-LSGIKSFLKYLKKRKITTE-------SNILNMRNLKKSNSLPRALNEKQALTL 137
           R LK S +  I + L  +    +  +        N+L  R LK+++       +++ALT 
Sbjct: 130 RQLKPSTIDSIHTVLHQILDMAVDDDYIRNNPSDNVL--RELKQAHCF--KTEKRRALTR 185

Query: 138 VDNVLL-----HTSHETKWIDARNSAILYLLYGCGLRISEALSLT------PQNIMDDQS 186
            +  LL     +T     W       I  +L G GLR+ E   L          ++D   
Sbjct: 186 PEQELLLSYLKNTPAAQYWY-----PIFAVLVGTGLRVGELTGLRWCDVDLENGVIDVNH 240

Query: 187 TL-----RIQG--KGDKI-----------RIVPLLPSVRKAIL------EYYDL-CPFDL 221
           TL     R  G  KG              R VP+L  V++AI+      E  DL C   +
Sbjct: 241 TLVYYDHRTDGSKKGCYFNVNTPKTPAGKRKVPMLSFVKEAIIMEKERQELLDLHCTATI 300

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG-------------LPLSTTAHTLRHS 268
           +      +F    G P + G   + IR++ R                LP   + H+LRH+
Sbjct: 301 DGYTDF-IFINRFGNPQHQGTLNKAIRRIIRDCNDEQFLKNENPEVLLP-HFSCHSLRHT 358

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           F T +   G +++ IQ  LGH  +STT  IYT+V
Sbjct: 359 FTTRMCEAGVNVKVIQDTLGHKDISTTLNIYTDV 392


>gi|290511259|ref|ZP_06550628.1| tyrosine recombinase [Klebsiella sp. 1_1_55]
 gi|289776252|gb|EFD84251.1| tyrosine recombinase [Klebsiella sp. 1_1_55]
          Length = 188

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 64/157 (40%), Gaps = 2/157 (1%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEY 213
           R+  ++ L +  G+RISE L L   ++   +  + ++  K     I PL    R+AI  +
Sbjct: 13  RDYCLILLAFRHGMRISELLDLHYHDLDLHEGRVNVRRLKNGFSTIHPLRFDEREAIERW 72

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
             +            LF   RG PL+     R IR      G    T  H LRH+    L
Sbjct: 73  SQVRAGWKAAAKTDALFISRRGTPLSRQQAYRIIRSAGENAGTVTHTHPHMLRHACGYEL 132

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-GGDW 309
              G D R IQ  LGH  +  T  YT  N+    G W
Sbjct: 133 AERGTDTRLIQDYLGHRNIRHTVRYTASNAARFAGIW 169


>gi|224026101|ref|ZP_03644467.1| hypothetical protein BACCOPRO_02854 [Bacteroides coprophilus DSM
           18228]
 gi|224019337|gb|EEF77335.1| hypothetical protein BACCOPRO_02854 [Bacteroides coprophilus DSM
           18228]
          Length = 405

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 26/163 (15%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI-----VPLLPSVRKAILEYY 214
            L+GC  GL   +  +LTP++   D +T RI  K  +++      +PLLP + K IL+ Y
Sbjct: 252 FLFGCFTGLSYIDIKTLTPEHFEKD-NTGRIWIKKRRVKTGVLSRIPLLP-IAKLILDKY 309

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                            G +  P+ +P    +Y++ +    G+      HT RH+FA+ +
Sbjct: 310 K---------------GGEKLLPIQDPADINKYLKDIAILCGINKRICFHTSRHTFASTI 354

Query: 274 -LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            L+N   L  I  +LGH     T  Y  +  K  G+ M ++ D
Sbjct: 355 TLANNISLEVISKMLGHTNTRMTAHYAKLIDKCIGEQMDKLMD 397


>gi|149916536|ref|ZP_01905052.1| Integrase [Roseobacter sp. AzwK-3b]
 gi|149809575|gb|EDM69432.1| Integrase [Roseobacter sp. AzwK-3b]
          Length = 188

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 89/191 (46%), Gaps = 21/191 (10%)

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           +K++ +L +A ++K+AL   +         T+    R+  IL +    GLR  E  +L  
Sbjct: 1   MKQAQTLSQA-DQKRALAYCN---------TRRYSLRDRTILQISVLAGLRAKEIAALRI 50

Query: 179 QNIMD------DQSTL-RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            ++ D      DQ TL R Q KG   R V +   +++ + +Y        + + + PLF+
Sbjct: 51  GDVYDTSGQVRDQFTLHRSQTKGGHARTVYVSAKLKRVLDQYRTQIA---DQDQKDPLFQ 107

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
             +    +     +    + +  GL  + ++H+ R +F T L   G ++R +  + GH  
Sbjct: 108 TQQRTAFSANTMCQLFLNIYKACGLN-NASSHSGRRTFITRLAEQGVNVRLLAELAGHRH 166

Query: 292 LSTTQIYTNVN 302
           +STTQ Y +VN
Sbjct: 167 ISTTQRYIDVN 177


>gi|145223514|ref|YP_001134192.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
 gi|145216000|gb|ABP45404.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
          Length = 391

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYL-GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           + RG+ G+   P V +R +R  R  + GLP   + H LRH  A+ L+++G D++++Q+ +
Sbjct: 282 VTRGVAGETAPPWVIEREVRAARSSIDGLPEEFSFHDLRHYLASLLIASGADIKTVQARM 341

Query: 288 GHFRLSTT 295
            H    TT
Sbjct: 342 RHGSARTT 349


>gi|325508725|gb|ADZ20361.1| Integrase XerD family protein [Clostridium acetobutylicum EA 2018]
          Length = 145

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           GK ++P ++   I+++ +   +  +   H LRH+ AT LL  G DL+ IQ  LGH  ++T
Sbjct: 60  GKYIHPMLYTNKIKKVLKAAKINKNVRFHDLRHTNATLLLQQGTDLKVIQERLGHKDIAT 119

Query: 295 T-QIYTNVN 302
           T  IY++VN
Sbjct: 120 TANIYSHVN 128


>gi|302527392|ref|ZP_07279734.1| tyrosine recombinase XerC [Streptomyces sp. AA4]
 gi|302436287|gb|EFL08103.1| tyrosine recombinase XerC [Streptomyces sp. AA4]
          Length = 387

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 71/187 (37%), Gaps = 48/187 (25%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
           R+ A++ +L G G+R  E + +   +           LR+ GKG K R V L   V  A+
Sbjct: 181 RDRAMVEILIGTGVRAEELVGVDLGDYRRPTAGGFGVLRVHGKGSKDREVALAAPVADAL 240

Query: 211 LEYYDLCPFDLNLNIQLPLFRG----IRGKPL-----NPGVFQRYIRQLRRYLGL----- 256
             Y         +  Q+P  RG     R +PL        V   ++  L R L       
Sbjct: 241 DAY-----LAGRVTPQVPALRGQVGASRAEPLFVTSTGARVHVSHVTALLRRLCATFCQP 295

Query: 257 -----------------------PLSTT--AHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
                                  PL  T   H+ RHS+ATH +  G   R +Q  LGH  
Sbjct: 296 PKTARLREVLDTAEARFVATHLQPLCDTIHPHSARHSYATHAIERGVPPRQVQRDLGHAA 355

Query: 292 LSTTQIY 298
           LSTT+ Y
Sbjct: 356 LSTTEGY 362


>gi|238923276|ref|YP_002936791.1| putative integrase/recombinase ripx [Eubacterium rectale ATCC
           33656]
 gi|238874950|gb|ACR74657.1| probable integrase/recombinase ripx [Eubacterium rectale ATCC
           33656]
          Length = 308

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 78/178 (43%), Gaps = 18/178 (10%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + LN+ +  TL+ +  L    E  W        + L+   G+R SEAL++TP++    + 
Sbjct: 116 KYLNQFELHTLIAD--LDIKEEPNW-----DWFILLVAKTGMRFSEALAITPKDFDFGRQ 168

Query: 187 TLRIQGKGDKIRIVPLLP-----SVRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPL 238
           TL I    D       LP     SVRK  +++  +  F      L    P+F G   K  
Sbjct: 169 TLSISKTWDYKGKGGFLPTKNKSSVRKIQIDWQIVVKFSELIKGLPEDEPIFVG-EEKIY 227

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           N  V     R  +   G+    + H LRH+ A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 228 NSTVNDALTRHCKA-CGIS-EISIHGLRHTHASLLLFAGVSIASVARRLGHASMTTTQ 283


>gi|57234334|ref|YP_181609.1| phage integrase family site specific recombinase [Dehalococcoides
           ethenogenes 195]
 gi|57224782|gb|AAW39839.1| site-specific recombinase, phage integrase family [Dehalococcoides
           ethenogenes 195]
          Length = 435

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 91/214 (42%), Gaps = 34/214 (15%)

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG----CGLR 169
           L MRN   +   PR    K A+++ D   L      + +DA  +   Y+ Y     CG+R
Sbjct: 158 LIMRNPADAVEPPRP--RKTAISVPDKDEL-----PRLLDAFETTPYYVFYCLLLYCGMR 210

Query: 170 ISEALSLTPQNIMDDQSTLRIQG------KGDKI----------RIVPLLPSVRKAILEY 213
             EAL+L  ++I   Q T++I         G+ +          R + + P+++  +LEY
Sbjct: 211 RGEALALRWKDIDLKQDTIQIAETAFTLRSGEYVIKEPKTPHSRRCIDIPPTMKLLLLEY 270

Query: 214 -YDLCPFDLNLNIQLPL----FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
             D   +   L ++L L    F    G+PLNP        +  R  G       H LRH 
Sbjct: 271 KADQTAYYAKLGVELGLHDFVFTRPNGEPLNPNTVTHTFLKAVRKAGFD-KLRLHDLRHL 329

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
            AT +L  G   + +   LGH  ++ T   Y++V
Sbjct: 330 HATLMLQAGIHPKIVSERLGHASINITLDTYSHV 363


>gi|103485932|ref|YP_615493.1| phage integrase [Sphingopyxis alaskensis RB2256]
 gi|98976009|gb|ABF52160.1| phage integrase [Sphingopyxis alaskensis RB2256]
          Length = 304

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 70/153 (45%), Gaps = 22/153 (14%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL---CP 218
           LL   GLRISEAL+L   ++++D   +R  GK  K R++ L PS R+A+  Y  +    P
Sbjct: 134 LLAATGLRISEALALQCNDLVEDGLVVR-NGKFGKQRLIALQPSTRQALEAYIAIRAKHP 192

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TA----HTLRHSFATHL 273
              N      LF  IRG+  +         +L R LG   +T TA    H LRH+FA   
Sbjct: 193 AKCN-----DLFVTIRGRAPHKVRAHVVFVRLARLLGYRGATGTAGMRLHDLRHTFAVRS 247

Query: 274 LSN--------GGDLRSIQSILGHFRLSTTQIY 298
           L +           +  +   LGH  ++ T  Y
Sbjct: 248 LESCPRDREAIAHHMAGLSVYLGHASIANTYWY 280


>gi|332885048|gb|EGK05301.1| hypothetical protein HMPREF9456_02971 [Dysgonomonas mossii DSM
           22836]
          Length = 92

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 18/93 (19%)

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           NP  F  +I             + HTLRH+ A HLL  G  L  I+ ILGH  + TT+IY
Sbjct: 3   NPAFFTGHI-------------SCHTLRHTKAMHLLQAGVILHHIRDILGHSSVMTTEIY 49

Query: 299 TNVNSKNGGDWMMEIYDQTHPSIT-----QKDK 326
              +SK   + +   Y +  P+I      +KDK
Sbjct: 50  ARSDSKQKREAIERAYLRLSPNIESENLWEKDK 82


>gi|306842096|ref|ZP_07474767.1| Phage integrase [Brucella sp. BO2]
 gi|306287792|gb|EFM59218.1| Phage integrase [Brucella sp. BO2]
          Length = 308

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 21/148 (14%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA--ILEYYDLCPF 219
            L   G R+ EA+ LT  +I + + T  +  K ++ R VPL    RKA  I       PF
Sbjct: 167 FLVDTGCRLGEAIGLTWNDIQEQRVTFWVT-KSNRSRTVPLTRRARKASHIPHERLKGPF 225

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHLLSNG 277
            +                LN   F++   + +  +GL        H LRH+ A+ L+  G
Sbjct: 226 SM----------------LNQVRFRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVRGG 269

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            D+R +Q  LGH  L  T  Y ++ + +
Sbjct: 270 IDIRRVQMWLGHQTLQMTMRYAHLATHD 297


>gi|218442682|ref|YP_002381002.1| integrase [Cyanothece sp. PCC 7424]
 gi|218175040|gb|ACK73772.1| integrase domain protein SAM domain protein [Cyanothece sp. PCC
           7424]
          Length = 319

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 122/271 (45%), Gaps = 31/271 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R LS  + ++Y  + ++F+ +         + + + Q++  +I  +    + + +   S+
Sbjct: 39  RSLSSNSQKAYRRELKRFINW---------SNKPLNQITPRQIVQYKEYLQGESLAASSI 89

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSH 147
            R+L  +KSF  +L++   T    +     L K  SLP   L++K+    ++ + L    
Sbjct: 90  NRALCAVKSFFAWLEETYQTQNPTVSVA--LNKLPSLPAFDLSDKE----IEALQLVLPQ 143

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLP 204
             + +  R++AI+ +L   GLR  E ++L     + D   +R+    GK D    VPL  
Sbjct: 144 RPEVMRKRDAAIIAVLRH-GLRACEVVALN----LGDYDGVRVHVRVGKDDSGGTVPLDA 198

Query: 205 SVRKAILEYYDLC-PFDLNLNIQLPLFRG---IRGKPLNPGVFQRY--IRQLRRYLGLPL 258
           + R AI  Y           +   P+F     + GKP   G    Y  I++L    G+  
Sbjct: 199 TARAAINAYLQQRREKGEKFSATAPMFASHSPVPGKPTRLGYQGLYYLIKELGSNAGIE- 257

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           + T H LRH+FAT+LL  G D    +++  H
Sbjct: 258 NLTPHRLRHTFATNLLLKGMDSLHARTLTRH 288


>gi|29293004|gb|AAO73844.1|AF335469_1 FotS [Escherichia coli]
          Length = 199

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 19/172 (11%)

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR- 198
           + LL  + E ++   R+  ++ + +  GLR+SE ++L     +DD  +L  Q    +++ 
Sbjct: 12  HCLLKAAAENQY-SVRDYCMISMAFIHGLRVSELVNLK----VDDYDSLSAQLNIKRLKN 66

Query: 199 ----IVPLLPSVRKAILEYYDLCPFD----LNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
               I PLLP   + +      C  D     + +    LF    G PL+   F + +R+ 
Sbjct: 67  GFCTIQPLLPDENELLQ-----CWLDERKTWDGHESCWLFLSKNGGPLSRQRFWQLLRKY 121

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                L +    H LRH+   +L   G D R IQ  LGH  +  T  YT  N
Sbjct: 122 GDEAHLTIKVHPHMLRHACGFNLAERGNDTRLIQDYLGHRNIRHTVHYTASN 173


>gi|254555199|ref|YP_003061616.1| prophage Lp3 protein 1, integrase [Lactobacillus plantarum JDM1]
 gi|254044126|gb|ACT60919.1| prophage Lp3 protein 1, integrase [Lactobacillus plantarum JDM1]
          Length = 384

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 79/182 (43%), Gaps = 33/182 (18%)

Query: 150 KWIDARNSAILYLLYG----CGLRISEALSLTPQNIMDDQSTLRI-----QGK-GDKIRI 199
           K ID +     Y L+      G+R  E L+LT Q+I      LR+     QGK G +I  
Sbjct: 188 KCIDQQKETEKYCLFRVLAFAGVRRGECLALTWQDIDFVHKNLRVNKTLTQGKRGKQIIQ 247

Query: 200 VPLLPSVRKAI-----------------LEYYDLCPFDLNLNIQLPLFRGIRG-KPLN-P 240
            P     R+ +                  EYY    F+     QL       G K LN P
Sbjct: 248 APKTKKGRRTVSLDNTTVEILQRWHKQQREYYLFLGFNTLQPDQLVFANTKNGFKSLNTP 307

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYT 299
           G   ++++++     L  S T H  RHS A+ L + G  ++ +Q+ LGH  ++TT  +YT
Sbjct: 308 G---KWLKRIITDYHLTPSITVHGFRHSHASALFAAGATIKEVQTRLGHEDVATTLNVYT 364

Query: 300 NV 301
           +V
Sbjct: 365 HV 366


>gi|209418091|ref|YP_002274120.1| site-specific recombinase [Mycobacterium liflandii 128FXT]
 gi|169409223|gb|ACA57629.1| site-specific recombinase [Mycobacterium liflandii 128FXT]
          Length = 345

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 70/313 (22%), Positives = 125/313 (39%), Gaps = 42/313 (13%)

Query: 20  NWLQNLEIERGLSKL---TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA-FI 75
            W      +R + K    T ++Y  D     + LA   +   T+ T   L+   +RA F 
Sbjct: 17  GWFGEFLADRAIRKPSPHTTKAYRQDFEAVALLLAGGADAISTLPT-NALNKESLRAAFA 75

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLPRALNEKQ 133
               T      S++R  S   +   +L        +N+L+   +       +P+AL +  
Sbjct: 76  VYAETHSAA--SIRRCWSTWNTLCTFLYT------ANLLDANPMPAIGRPKVPKALPKSY 127

Query: 134 ALTLVDNVLLH------TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQ 185
               V+N++        ++  + W + R+ AI++     GLR  E +      I    D 
Sbjct: 128 TADAVNNLIAAIDTDDGSARRSNWPE-RDRAIIFTALLTGLRADELIRANIGAIRCNADG 186

Query: 186 STLRIQGKGDKIRIVP----LLPSVRKAILEYYDLCPF--------DL--NLNIQLPLFR 231
             L + GKG+K R +P    L+  +++ +    D  P         D+    +   PLF 
Sbjct: 187 GVLHVSGKGNKDRRIPCDTKLIEMLQRYLQTREDRIPHLRKRSASPDVMGRFSPTAPLFV 246

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGL----PLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           G  G+ +  G  Q  I +  +  G+          H LRH+FAT L +    + ++  +L
Sbjct: 247 GSDGERITRGTLQYRILRGFKKAGINNDRAAGALVHGLRHTFATELANANVSVYALMKLL 306

Query: 288 GHFRLSTTQIYTN 300
           GH  + T+Q Y +
Sbjct: 307 GHESMVTSQRYVD 319


>gi|58616515|ref|YP_195644.1| putative integrase (fragment) [Azoarcus sp. EbN1]
 gi|56315977|emb|CAI10620.1| putative integrase (fragment) [Aromatoleum aromaticum EbN1]
          Length = 163

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           RG+P   G  Q+ I    +  GLP S  +H LRH+ A  L+ +G  L+ +  +L H  L+
Sbjct: 80  RGEPSTAGAIQKVITNAYQRSGLPHSG-SHALRHTLACRLVEHGSSLKEVADLLRHRSLN 138

Query: 294 TTQIYTNVNS 303
           TT IY  +++
Sbjct: 139 TTLIYAKLDT 148


>gi|307591331|ref|YP_003900130.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306986185|gb|ADN18064.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 318

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 98/225 (43%), Gaps = 12/225 (5%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           QK    ++   L  ++  L+  KK K+ T  +  +   +    +   +L  +   +L   
Sbjct: 80  QKYSPGTVNHKLCALRRVLREAKKLKLITLEDYSDAIEIDSVRNHQPSLKGRALSSLEIQ 139

Query: 141 VLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR 198
           VL     E   I + R++A+L +L G GLR +E +SL   +       + + +GKG K R
Sbjct: 140 VLFTHLLELSTISSFRDAALLAVLLGSGLRRAEVVSLDLADFNHSTGGIEVREGKGGKNR 199

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPL----NPGVFQRYIRQLRRY 253
            V L       ++++ +L  F        PLF  + +G+ +      G    YI Q R  
Sbjct: 200 TVYLPDWGTSLVVQWLNLRGFRPG-----PLFYAVNKGQRIVKRRMSGQAVLYILQKRAS 254

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                  + H LR +F + LL  G DL ++Q + GH   +TT  Y
Sbjct: 255 DAGIEQVSPHDLRRTFISGLLDAGIDLVTVQKLAGHSDPATTARY 299


>gi|296162809|ref|ZP_06845592.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886980|gb|EFG66815.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 559

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 122/314 (38%), Gaps = 60/314 (19%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           LE  R LS LT +    D   +  FL         +      S  E R F     T  + 
Sbjct: 248 LERGRALSSLTSE----DATAYRAFLRHPAPRTRWVAPACPRSSPEWRPF-----TGALS 298

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSL--PRALNEKQ---ALTL 137
             S+  +LS + +  ++L +++    +    L +R  +++  L   RA    +     T+
Sbjct: 299 LDSIAYALSVLGAMFRWLIEQRYVLANPFAGLKVRGAQRNGELDASRAFTSGEWELVRTI 358

Query: 138 VDNVLLHTSHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNI---MDDQSTLRIQ 191
            D   L  SH   W       + ++L   YG GLR +E + +T   I      +  L + 
Sbjct: 359 ADG--LEWSH--GWTAPAAQRLRFVLDFGYGTGLRAAELVGVTLGGIETGARGERWLHLT 414

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP---------GV 242
           GKG K   V L P  R A+ +Y         +   LP+    R  P  P         G+
Sbjct: 415 GKGAKAGKVVLPPLARFALDQYL--------VQRGLPV-SPARWSPDTPLLGHLDAPGGI 465

Query: 243 FQRYIRQ-LRRYLGLPLST---------------TAHTLRHSFATHLLSNGGDLRSIQSI 286
               +R+ LRR+      +               T H +RH+ ATH L+ G  L S++  
Sbjct: 466 TTPRLREILRRFFHAAADSIEADHLALAGKLRRATPHWMRHTHATHALAGGATLTSVRDN 525

Query: 287 LGHFRLSTTQIYTN 300
           L H  +STT +Y +
Sbjct: 526 LRHASISTTSVYLD 539


>gi|291320528|ref|YP_003515792.1| phage family integrase [Mycoplasma agalactiae]
 gi|290752863|emb|CBH40838.1| Phage family integrase [Mycoplasma agalactiae]
          Length = 306

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 12/152 (7%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY 213
           +++L+   GLR SEA++LTP +    +  L I    +   +   LP     SVRK  L++
Sbjct: 138 LIFLIAKTGLRFSEAVALTPDDFDFTKQLLNISKTWNYKELGGFLPTKNKSSVRKIQLDW 197

Query: 214 YDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
             +  F      L    P+F   + K  N  +     R+ ++   +P+  + H LRH+ A
Sbjct: 198 QTISRFASLVQGLEKNKPIF-VFKEKVFNSTINDILARRCKK-AKIPV-ISIHGLRHTHA 254

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQ-IYTNV 301
           + LL  G  + S+   LGH  ++TT+ IY ++
Sbjct: 255 SILLYAGVSIASVAKRLGHSSMNTTERIYLHI 286


>gi|227535878|ref|ZP_03965927.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227244366|gb|EEI94381.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 86

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           T HT RH+FAT  ++ G  L S+  ++GH  +STTQIY  + S+
Sbjct: 14  TFHTARHTFATMFVTEGVPLESLSKMMGHKNISTTQIYAKITSQ 57


>gi|309776072|ref|ZP_07671063.1| site-specific recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916023|gb|EFP61772.1| site-specific recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 283

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 11/149 (7%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           D R   +L  +   G+R+SE   +T + +   ++T+  +GK    R V     +R+ +L+
Sbjct: 123 DERLYLLLQTICATGIRVSEHSFITVEALKCRKTTVHNKGKT---RNVFFPAKLRQQLLK 179

Query: 213 YYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFA 270
           Y   C     LNI+   +F    GKPL+     + +++L R   +       H LRH FA
Sbjct: 180 Y---CR---KLNIKTGCIFITKTGKPLDRSNIWKSMKKLCRVANVSSHKVFPHNLRHLFA 233

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               S   D+  +  ILGH  + TT++YT
Sbjct: 234 FTFYSMEKDVVRLADILGHSSIETTRMYT 262


>gi|254438184|ref|ZP_05051678.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198253630|gb|EDY77944.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 419

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 4/74 (5%)

Query: 229 LFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           LF G + G+P+     +R+   +++ +G+P     H LRH+FA+ L+S G  L  I  +L
Sbjct: 316 LFPGDVPGQPVKE--IRRFWSNIQKQIGIP-DVRIHDLRHTFASLLVSGGASLEMIGKLL 372

Query: 288 GHFRLSTTQIYTNV 301
           GH ++ TTQ Y ++
Sbjct: 373 GHSQMQTTQRYAHL 386


>gi|282915692|ref|ZP_06323463.1| integrase [Staphylococcus aureus subsp. aureus D139]
 gi|282320508|gb|EFB50847.1| integrase [Staphylococcus aureus subsp. aureus D139]
          Length = 348

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 84/208 (40%), Gaps = 32/208 (15%)

Query: 132 KQALTLVDNVLLHTSHETKWIDARN----SAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           K+ L   D ++ H  H T+    RN     A++      G+RI E L++   N+  +  T
Sbjct: 135 KELLQCFDYLIKHKRHATR---KRNYEMVKALVEFQINNGMRIGELLAIKTDNVDVENKT 191

Query: 188 LRIQGKGDKI--------------------RIVPLLPS----VRKAILEYYDLCPFDLNL 223
           L I G  + +                    R + L       ++K +LE      ++   
Sbjct: 192 LEIDGTINWVTDVETGAFGVKETTKTSKSYRTIGLTTQSINLLKKLMLENKKENQWNAKF 251

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             +  +F    G P++       I++      +    T HTLRH+  + L   G +L++I
Sbjct: 252 IDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQLGINLKAI 311

Query: 284 QSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           Q  +GH    TT +IYT+V  +   D M
Sbjct: 312 QDRVGHSDYKTTLEIYTHVTDQMAKDMM 339


>gi|300773919|ref|ZP_07083788.1| integrase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300760090|gb|EFK56917.1| integrase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 416

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 28/45 (62%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            T HT RH+F T  L+ G  L S+  ++GH  +STTQIY  + S+
Sbjct: 348 VTFHTARHTFGTMFLTEGVPLESLSKMMGHKNISTTQIYAKITSQ 392


>gi|170023131|ref|YP_001719636.1| integrase family protein [Yersinia pseudotuberculosis YPIII]
 gi|169749665|gb|ACA67183.1| integrase family protein [Yersinia pseudotuberculosis YPIII]
          Length = 313

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 27/164 (16%)

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++ +L  TSH    ID   + ++ +    G R SE+  LT   +  ++ T   + KG K 
Sbjct: 145 INELLAATSHH---IDM--NRVIRVCLCTGARWSESQFLTKNQLSPNKITF-TKTKGKKN 198

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGL 256
           R VP+     + + E                    I+ + L    +  ++  L    + L
Sbjct: 199 RTVPISADFYEELKE--------------------IKSERLFGDCYYPFLTILNNSSIVL 238

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           P     H LRHSFA H + NGG++  +Q ILGH  ++ T  Y +
Sbjct: 239 PKGQLTHVLRHSFAAHFMMNGGNILVLQKILGHHDINMTMRYAH 282


>gi|154492472|ref|ZP_02032098.1| hypothetical protein PARMER_02106 [Parabacteroides merdae ATCC
           43184]
 gi|154087697|gb|EDN86742.1| hypothetical protein PARMER_02106 [Parabacteroides merdae ATCC
           43184]
          Length = 406

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 9/88 (10%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +F G + K L  G  +R++       G+    T H  RHSF +  +  G D+  IQ+ +G
Sbjct: 320 IFEGFKDKMLQ-GPLKRWLLAA----GITKKITFHCTRHSFGSLHVEMGTDMAVIQAYMG 374

Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           H  ++TTQIY    SK     M E+ D+
Sbjct: 375 HKNITTTQIY----SKMAAQQMCEVVDK 398


>gi|116619763|ref|YP_821919.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222925|gb|ABJ81634.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 251

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 54/119 (45%), Gaps = 4/119 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213
           R+  IL  LY  G+R +E   L  ++I  ++  L I QGKG K R VPL P +   +  +
Sbjct: 120 RHRTILMALYATGMRRAELCHLRIEDIDKERMVLHIRQGKGGKDREVPLPPKLLAQLRIH 179

Query: 214 YDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           Y   P    L    P  +  R  +P+         RQ  R  G+  S   HTLRH  A+
Sbjct: 180 YRALPHRSALV--FPSLQSRRPDQPMTEKAVWHACRQAARRAGITKSVHPHTLRHYAAS 236


>gi|325104265|ref|YP_004273919.1| integrase family protein [Pedobacter saltans DSM 12145]
 gi|324973113|gb|ADY52097.1| integrase family protein [Pedobacter saltans DSM 12145]
          Length = 416

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 28/45 (62%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            T HT RH+F T  L+ G  L S+  ++GH  +STTQIY  + S+
Sbjct: 348 VTFHTARHTFGTMFLTEGVPLESLSKMMGHKNISTTQIYAKITSQ 392


>gi|325680591|ref|ZP_08160134.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324107728|gb|EGC02001.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 168

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 11/118 (9%)

Query: 197 IRIVPLLPSVRKAI-------LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           +R +PL+P + K +       ++Y  +   D +      + R   G  + P    R+ ++
Sbjct: 24  VRTLPLIPHIEKMLKERLKLEMQYSQMLKGDFDRTFDGFVCRDNTGAIITPEYATRHFKE 83

Query: 250 L-RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKN 305
           + ++Y   PL    H LRHS A+ LL+NG  +++IQ  LGH   + T   Y++++ K+
Sbjct: 84  VVKKYKLRPLRF--HDLRHSCASLLLANGVSMKAIQDWLGHSTFNVTANFYSHLDYKS 139


>gi|88857243|ref|ZP_01131886.1| putative site-specific tyrosine integrase/recombinase
           [Pseudoalteromonas tunicata D2]
 gi|88820440|gb|EAR30252.1| putative site-specific tyrosine integrase/recombinase
           [Pseudoalteromonas tunicata D2]
          Length = 403

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 77/183 (42%), Gaps = 40/183 (21%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQ--NIM-------DDQSTLRIQGKGDKIRIVPLLPS 205
           RN   L  L G  LRISE LS  PQ   +M       D    LR+ GKG+K+R V L   
Sbjct: 219 RNLFTLACLKGLYLRISE-LSERPQWSPVMSHFWQDNDGFWFLRVMGKGNKLRDVTLSDD 277

Query: 206 VRKAILEY--YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS---- 259
               +  Y  Y   P     +   P+   IRG+    G  +  +RQ+RR +         
Sbjct: 278 FTHYLKRYRIYRGLPSLPTADEPFPIIHKIRGQ----GGME--VRQIRRLVKQSFDLAEH 331

Query: 260 ----------------TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN 302
                            TAH LRH+ ATH  +    L+ +   LGH +L+TT QIY   N
Sbjct: 332 SLRKDGFIDDAEQLSCATAHWLRHTGATH-DAQTRPLKHLSEDLGHAKLATTDQIYIQTN 390

Query: 303 SKN 305
            K+
Sbjct: 391 VKD 393


>gi|323344353|ref|ZP_08084578.1| integrase [Prevotella oralis ATCC 33269]
 gi|323094480|gb|EFZ37056.1| integrase [Prevotella oralis ATCC 33269]
          Length = 409

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 88/201 (43%), Gaps = 36/201 (17%)

Query: 120 KKSNSLPRALNEK-----QALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISE 172
           +  N  PRAL+       QALT          +E +   ARN      L+ C  G+   +
Sbjct: 217 RGENKQPRALDRASLDKLQALTF-------EPYEVELETARN----LFLFSCFTGVAYCD 265

Query: 173 ALSLTPQNIM-DDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
            ++L  +++  DD+  L ++    K + +  V LLP     I +Y      D    +  P
Sbjct: 266 MVALNREHLFTDDEGGLWLKFRRQKTENLCRVKLLPEAVHLIAQYQS----DERTTLFAP 321

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSIL 287
           +       P +  + Q    QLR  + +PLS  AH  RH+FAT + L  G  + ++  +L
Sbjct: 322 I-------PYSVYLVQLKALQLRAGISIPLS--AHVGRHTFATLITLERGVPIETVSRML 372

Query: 288 GHFRLSTTQIYTNVNSKNGGD 308
           GH  + TT+ Y +V  K   D
Sbjct: 373 GHRNIQTTERYAHVTPKKLFD 393


>gi|254718782|ref|ZP_05180593.1| Phage integrase [Brucella sp. 83/13]
 gi|265983761|ref|ZP_06096496.1| phage integrase [Brucella sp. 83/13]
 gi|306837500|ref|ZP_07470375.1| Phage integrase [Brucella sp. NF 2653]
 gi|264662353|gb|EEZ32614.1| phage integrase [Brucella sp. 83/13]
 gi|306407392|gb|EFM63596.1| Phage integrase [Brucella sp. NF 2653]
          Length = 308

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 21/148 (14%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA--ILEYYDLCPF 219
            L   G R+ EA+ LT  +I + + T  +  K ++ R VPL    RKA  I       PF
Sbjct: 167 FLVDTGCRLGEAIGLTWNDIQEQRVTFWVT-KSNRSRTVPLTRRARKASHIPHERLKGPF 225

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHLLSNG 277
            +                LN   F++   + +  +GL        H LRH+ A+ L+  G
Sbjct: 226 SM----------------LNQVRFRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVRGG 269

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            D+R +Q  LGH  L  T  Y ++ + +
Sbjct: 270 IDIRRVQMWLGHQTLQMTMRYAHLATHD 297


>gi|325279715|ref|YP_004252257.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
 gi|324311524|gb|ADY32077.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
          Length = 451

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 17/157 (10%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLL-PSV---------R 207
             +  + CGLR+ + ++L  ++I   +  LR I  K +K  ++PL  P++         R
Sbjct: 279 FFFAFHACGLRVVDVMTLQWKHIDFARKELRKIMIKTNKRHVIPLTEPALHILQQWREKR 338

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +     ++L    L+L+    L++             + +  +   +GLP S + H  RH
Sbjct: 339 EGCRYVFNLVKETLDLDDAEALYKARNNAT---KCINQSLAVVGEQIGLPFSLSMHAARH 395

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           SFA   L+ G  +  +  +LGH   S+T I   V ++
Sbjct: 396 SFAVFALNKGLSMSVVSRLLGH---SSTDITEKVYAR 429


>gi|310287616|ref|YP_003938874.1| phage family integrase [Bifidobacterium bifidum S17]
 gi|311064529|ref|YP_003971254.1| integrase protein [Bifidobacterium bifidum PRL2010]
 gi|309251552|gb|ADO53300.1| phage family integrase [Bifidobacterium bifidum S17]
 gi|310866848|gb|ADP36217.1| Integrase protein [Bifidobacterium bifidum PRL2010]
          Length = 309

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 12/146 (8%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY 213
           ++ L+   GLR SEAL LTP +      TL +    D       +P     SVRK  L++
Sbjct: 142 LILLVAKTGLRFSEALGLTPDDFDFVHQTLSVSKTWDYKNGGGFVPTKNASSVRKVQLDW 201

Query: 214 ---YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
                L     ++    P+F  + GK  N        R   R   +P+  + H LRH+ A
Sbjct: 202 QLIMQLSTLLKDMPASDPIF--VNGKVYNSTANNILARHCER-ANVPV-ISIHGLRHTHA 257

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQ 296
           + LL  G  + S+   LGH  ++TTQ
Sbjct: 258 SLLLFAGVSIASVSKRLGHASMNTTQ 283


>gi|306845239|ref|ZP_07477815.1| Phage integrase [Brucella sp. BO1]
 gi|306274398|gb|EFM56205.1| Phage integrase [Brucella sp. BO1]
          Length = 308

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 21/148 (14%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA--ILEYYDLCPF 219
            L   G R+ EA+ LT  +I + + T  +  K ++ R VPL    RKA  I       PF
Sbjct: 167 FLVDTGCRLGEAIGLTWNDIQEQRVTFWVT-KSNRSRTVPLTRRARKASHIPHERLKGPF 225

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHLLSNG 277
            +                LN   F++   + +  +GL        H LRH+ A+ L+  G
Sbjct: 226 SM----------------LNQVRFRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVRGG 269

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            D+R +Q  LGH  L  T  Y ++ + +
Sbjct: 270 IDIRRVQMWLGHQTLQMTMRYAHLATHD 297


>gi|225387163|ref|ZP_03756927.1| hypothetical protein CLOSTASPAR_00915 [Clostridium asparagiforme
           DSM 15981]
 gi|225046736|gb|EEG56982.1| hypothetical protein CLOSTASPAR_00915 [Clostridium asparagiforme
           DSM 15981]
          Length = 284

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 12/152 (7%)

Query: 151 WIDARNSAILYLLY--GCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSVR 207
           W D   S    + Y    G+RISE   L    I D +   + I  KG+K+R +  +P+V 
Sbjct: 123 WEDEEFSYYFVIRYMAATGVRISE---LVKFEIADVKFGFKDIYSKGNKMRRI-YIPTVL 178

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR-RYLGLPLSTTAHTLR 266
           K   E +     + +   +  LF    G P+     +  ++    RY   P     H+ R
Sbjct: 179 KQKTEVW----LEKSKRNKGALFLNRFGNPITASGIRGQLKTFALRYNLDPEVVYPHSFR 234

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           H FA + + N GD+  +  +LGH  + TT+IY
Sbjct: 235 HRFAKNFIENSGDIALLSDLLGHESIETTRIY 266


>gi|254461123|ref|ZP_05074539.1| phage integrase family protein [Rhodobacterales bacterium HTCC2083]
 gi|206677712|gb|EDZ42199.1| phage integrase family protein [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 191

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 18/184 (9%)

Query: 132 KQALTLVD----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD--- 184
           +QA TL D     VL + +  T+    R++ I       GLR  E  +L   ++ D    
Sbjct: 6   RQAKTLKDAEIKRVLAYCA--TRQHALRDTTIFVFSLHAGLRAKELAALRISDVYDSVGN 63

Query: 185 -QSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
             S+  +     KG + R V +  ++++ + +YY   P         PLF   +G   + 
Sbjct: 64  VHSSFVLSAAATKGARTRTVYVNKTLKRQLAQYYPTLPKQHTA----PLFCSQKGSFFSA 119

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               + +  + +   L  +T+ H+ R +F T L S G  +R +  + GH  ++TTQ Y +
Sbjct: 120 NTMCQLLIHIFQQCSLKHATS-HSGRRTFITRLASKGVGVRVLAELAGHSSIATTQRYID 178

Query: 301 VNSK 304
           VN++
Sbjct: 179 VNAE 182


>gi|295676653|ref|YP_003605177.1| integrase family protein [Burkholderia sp. CCGE1002]
 gi|295436496|gb|ADG15666.1| integrase family protein [Burkholderia sp. CCGE1002]
          Length = 414

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 70/174 (40%), Gaps = 32/174 (18%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSV 206
           AR   +  L Y  G+RISE                  DQ  L   GKGDK RIVP+   +
Sbjct: 211 ARCRWLTTLFYLQGMRISEVAGGQMGQFFRRLGADGQDQWWLETLGKGDKERIVPVSAEL 270

Query: 207 RKAILEYYDLCPFDL--NLNIQLPL---FRGIRGKPLNPGVFQRYIRQLRRYLGLPL--- 258
            + +  Y  L           + PL   F+G R + L+       I+ +  + G  +   
Sbjct: 271 VQELRSYRTLNGLAALPTRAEETPLVLPFKG-RKRCLSRSAIHDAIKGI--FAGAAMWLR 327

Query: 259 --------------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                           +AH LRH+  +H    G DLR+I+  LGH  L+TT +Y
Sbjct: 328 ARGPEFADRADELERASAHWLRHTAGSHQADGGVDLRTIRDNLGHVSLNTTSLY 381


>gi|224827079|ref|ZP_03700176.1| integrase family protein [Lutiella nitroferrum 2002]
 gi|224600745|gb|EEG06931.1| integrase family protein [Lutiella nitroferrum 2002]
          Length = 330

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           G F+  +   R  L LP     H LRH+FA+H + NGG++  +Q ILGH  L+ T  Y +
Sbjct: 255 GAFRDAVE--RCGLVLPDGQMTHVLRHTFASHFVMNGGNILVLQKILGHQSLTMTIRYAH 312

Query: 301 V 301
           +
Sbjct: 313 L 313


>gi|17987590|ref|NP_540224.1| integrase [Brucella melitensis bv. 1 str. 16M]
 gi|260563689|ref|ZP_05834175.1| phage integrase [Brucella melitensis bv. 1 str. 16M]
 gi|17983297|gb|AAL52488.1| integrase [Brucella melitensis bv. 1 str. 16M]
 gi|260153705|gb|EEW88797.1| phage integrase [Brucella melitensis bv. 1 str. 16M]
          Length = 308

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 21/148 (14%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA--ILEYYDLCPF 219
            L   G R+ EA+ LT  +I + + T  +  K ++ R VPL    RKA  I       PF
Sbjct: 167 FLVNTGCRLGEAIGLTWNDIQEQRVTFWVT-KSNRSRTVPLTRRARKASHIPRERLKGPF 225

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNG 277
            +                LN   F++   + +  +GL        H LRH+ A+ L+  G
Sbjct: 226 SM----------------LNQVRFRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVRGG 269

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            D+R +Q  LGH  L  T  Y ++ + +
Sbjct: 270 IDIRRVQMWLGHQTLQMTMRYAHLATHD 297


>gi|322411723|gb|EFY02631.1| site-specific tyrosine recombinase XerS [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 356

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 130/330 (39%), Gaps = 64/330 (19%)

Query: 12  FELLKERQ---NWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           +E LKE +   +WL + ++     ++ + L + E  T++ L     Y  E+ ++ T    
Sbjct: 39  YEYLKEYKRFFDWLMDADLTDATVIADIDLATLENLTKKDLEAFVLYLRERPSLNTYST- 97

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL- 125
                         Q +   ++ R+LS + S  KYL +     +      RN+ K  S  
Sbjct: 98  -------------KQGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTK 144

Query: 126 -------PRALNEKQALTLVDNVL-----LHTSHETKWID----------ARNSAILYLL 163
                   RA N KQ L L D  +     +   +E K  +           R+ AI+ LL
Sbjct: 145 KKKETLASRAENIKQKLFLGDETMGFLEYVDKDYELKLSNRAKSSFRKNKERDLAIIALL 204

Query: 164 YGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKAIL--------- 211
              G+R+SEA++L  +++   M     +R  GK D + +        +A L         
Sbjct: 205 LASGVRLSEAVNLDLKDVNLNMMVIEVIRKGGKRDSVNVAGFAKPYLEAYLAIRKNRYKA 264

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           E  DL  F       L  +RG+  + ++    ++ + +  +     +  T H LRH+ AT
Sbjct: 265 EKQDLAFF-------LTEYRGVPNR-MDASSIEKMVGKYSQ--DFKIRVTPHKLRHTLAT 314

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            L         +   LGH     T +YT++
Sbjct: 315 RLYDATKSQVLVSHQLGHASTQVTDLYTHI 344


>gi|148559347|ref|YP_001258625.1| phage integrase family site specific recombinase [Brucella ovis
           ATCC 25840]
 gi|148370604|gb|ABQ60583.1| site-specific recombinase, phage integrase family [Brucella ovis
           ATCC 25840]
          Length = 308

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 21/148 (14%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA--ILEYYDLCPF 219
            L   G R+ EA+ LT  +I + + T  +  K ++ R VPL    RKA  I       PF
Sbjct: 167 FLVDTGCRLGEAIGLTWNDIQEQRVTFWVT-KSNRSRTVPLTRRARKASHIPRERLKGPF 225

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNG 277
            +                LN   F++   + +  +GL        H LRH+ A+ L+  G
Sbjct: 226 SM----------------LNQVRFRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVRGG 269

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            D+R +Q  LGH  L  T  Y ++ + +
Sbjct: 270 IDIRRVQMWLGHQTLQMTMRYAHLATHD 297


>gi|153955212|ref|YP_001395977.1| integrase-related protein [Clostridium kluyveri DSM 555]
 gi|219855643|ref|YP_002472765.1| hypothetical protein CKR_2300 [Clostridium kluyveri NBRC 12016]
 gi|146348070|gb|EDK34606.1| Integrase-related protein [Clostridium kluyveri DSM 555]
 gi|219569367|dbj|BAH07351.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 308

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 23/180 (12%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + LN+ +  TL+ N+ L       W        + L+   G+R SEAL+LTP++      
Sbjct: 116 KYLNQFELHTLLSNLDLKPEVSWDWF-------ILLVAKTGMRFSEALALTPKDFDFSHQ 168

Query: 187 TLRIQGKGDKIRIVPLLP-----SVRKAILEYYDLCPFDLNLN---IQLPLF--RGIRGK 236
            L I    D       LP     SVRK  +++  +  F   LN      P+F    +   
Sbjct: 169 ILSISKTWDYKGSGGFLPTKNQSSVRKVQIDWQTVIQFSELLNGLPEGSPIFTENKVYNS 228

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            +N G+  R  +  +    +P+  + H LRH+ A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 229 TVN-GILTRRCKNAK----IPV-ISIHGLRHTHASLLLFAGVSIASVARRLGHASMTTTQ 282


>gi|293570406|ref|ZP_06681462.1| integrase [Enterococcus faecium E980]
 gi|291609501|gb|EFF38767.1| integrase [Enterococcus faecium E980]
          Length = 361

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 77/161 (47%), Gaps = 8/161 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI  L+ G GLR+SE +++   ++  D++ + +  KG+K   V +     + +  Y 
Sbjct: 201 RDLAINALILGSGLRLSEVININLDDLSLDKNNVVVTRKGNKRDAVNIAAFAMEYLANYL 260

Query: 215 DLCP--FDLNLN---IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
            +    + +  N   + L +++G   K ++    +R + +  +  G  +  + H LRH+ 
Sbjct: 261 AIRKERYKVTENEKALFLAIYQG-EAKRISGIAIERMVAKYSK--GFRIQVSPHKLRHTL 317

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           AT L      L      LGH   +TT +YT++++    D +
Sbjct: 318 ATRLYQQTNSLVLTAQQLGHSSTNTTTLYTHIDNAATIDAL 358


>gi|291514242|emb|CBK63452.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 400

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 20/156 (12%)

Query: 162 LLYGC--GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVRKAILEYYD 215
            ++ C  GL   +   L P +I    DD+  +RI  K  K+   +PL P + + IL+ Y+
Sbjct: 246 FIFSCFTGLAYVDTQLLYPHHIGRTADDRRYIRINRKKTKVESFIPLHP-IAEQILDLYN 304

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY-IRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                   +   P+F      PL       + I +L   +G   + + H  RHSF + L+
Sbjct: 305 ------TTDDTQPVF------PLPSRDMMWFEIHELGVIIGRKENLSYHQARHSFGSFLI 352

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           S G    SI  ++GH  +++TQ Y  +  K   + M
Sbjct: 353 SEGICTESIAKMMGHASITSTQTYAKIAEKKIAEDM 388


>gi|257887017|ref|ZP_05666670.1| site-specific recombinase [Enterococcus faecium 1,141,733]
 gi|257823071|gb|EEV50003.1| site-specific recombinase [Enterococcus faecium 1,141,733]
          Length = 391

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 71/171 (41%), Gaps = 31/171 (18%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ----GKGDK-----------------IRIV 200
           +++  GLR SEAL L   +I   Q+TL I     G  +K                  R +
Sbjct: 198 IIFDQGLRKSEALGLQWADIDFSQNTLNINRERLGAAEKGPNKGLIITDDTKTPSGTRSL 257

Query: 201 PLLPSVRKAIL-------EYYDLCPF--DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           P+   V+KA+L       + +   P   D    I +  +   +G P+          ++ 
Sbjct: 258 PMTKRVKKALLTLRNQVIKEFGFLPETDDHEAFIFINTYGKNKGIPIRDRTVNGASHRIE 317

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +   LP   T H  RH+FA      G  L  I+  LGH  +STTQ+Y +++
Sbjct: 318 KRASLP-HITVHDGRHTFAARTRQAGIPLEDIKDFLGHKDVSTTQVYAHIS 367


>gi|218295944|ref|ZP_03496724.1| integrase family protein [Thermus aquaticus Y51MC23]
 gi|218243682|gb|EED10210.1| integrase family protein [Thermus aquaticus Y51MC23]
          Length = 391

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 60/281 (21%), Positives = 118/281 (41%), Gaps = 37/281 (13%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLK 120
           ++++    +RA + +        R++ R L  +K+  +   + ++     +  + +R L 
Sbjct: 120 LQEVKPVHVRAAVDRVIEAGYAPRTVARVLMRLKALFREALRLELVARNPAEAIQVR-LP 178

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K     RAL  ++   L++      S +        + +L L+   GLR  EAL+L   +
Sbjct: 179 KGEKAARALEPEEVARLLEAAEASRSRDM-------ALLLRLMLETGLRRGEALALQWGD 231

Query: 181 IMDDQSTLRI----QGKGDKIRIVPL-LPSVRKAILEYYD---------------LCPFD 220
           +  ++  +R+       G K    PL  P+ ++ +                    L P +
Sbjct: 232 VDLERGEVRVWRAWAKVGSKGAFTPLKTPTAKRVVPLPLGLLRRLKARKEELLERLNPEE 291

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
           ++    L L  G+  KP++P  F  Y+R+L    GL      H LRH++AT  LS G  L
Sbjct: 292 VD---GLHLVGGV--KPVDPDAFNHYLRRLAEKAGLG-RVRVHDLRHTWATLALSRGIPL 345

Query: 281 RSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPS 320
             +   LGH   + T  +Y ++  +    +++++ D   P 
Sbjct: 346 EVVSERLGHASPTITLNVYRHLLEEERRGYVLDLEDLLSPG 386


>gi|83312787|ref|YP_423051.1| integrase [Magnetospirillum magneticum AMB-1]
 gi|82947628|dbj|BAE52492.1| Integrase [Magnetospirillum magneticum AMB-1]
          Length = 189

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 11/160 (6%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-------IQGKGDKIRIVPLLP 204
           +  RN   + L +  G+R  E  +L   +++++   +R        Q KG + R V +  
Sbjct: 25  LSTRNRLAVLLSHWAGMRAGEIAALKIMDVVNEGGAVRDRVHLAATQTKGKRGRTVFINT 84

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            +++ I  Y +   +    + + PL R  +G   +P       R++    GL     +H+
Sbjct: 85  KLQREIARYLEQREWT---DERKPLIRSQKGGHFSPTTMVMLFRRIYDEAGLS-DARSHS 140

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            R S+ T L + G  +  +Q + GH  + TTQ Y  VN +
Sbjct: 141 GRRSYLTTLANKGVSVFVLQQLAGHQSIQTTQRYVTVNEE 180


>gi|37528603|ref|NP_931948.1| hypothetical protein plu4790 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36788041|emb|CAE17162.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 140

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 14/69 (20%)

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN-----------VNSK 304
           LP     H LRH+FA+H +  GG++ ++Q ILGH  +  T  Y +           +N  
Sbjct: 75  LPEGQATHVLRHTFASHFVMKGGNIVALQQILGHANIQQTMAYAHLAPDYLQFAIMLNPL 134

Query: 305 NGGDWMMEI 313
           NGG   MEI
Sbjct: 135 NGG---MEI 140


>gi|289566905|ref|ZP_06447312.1| predicted protein [Enterococcus faecium D344SRF]
 gi|289161311|gb|EFD09204.1| predicted protein [Enterococcus faecium D344SRF]
          Length = 347

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 27/176 (15%)

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQG---------- 192
           TSH     + R S +   LY  G+R  EA++L+  +  I ++ +++ I G          
Sbjct: 165 TSH-----NKRYSLLFQWLYLTGMRPGEAIALSKDDVHITNNNASVVINGTMMYRERSIA 219

Query: 193 ---KGDKIRIVPLLPSV---RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
              K D  +    +  +   +KAI  Y +L   +LN N Q  LF+  +G P        Y
Sbjct: 220 DMKKSDSTKTAAGMREIDLPKKAIAIYNEL--LELNPNGQF-LFQTTKGTPFQLTAINTY 276

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNV 301
           +R  +  + +    ++H  RH+  + L   G  L +IQ  +GH     T+ IY +V
Sbjct: 277 LRNHKADMKIDKKLSSHIFRHTHISKLAELGTPLYAIQDRVGHENSDITEKIYLHV 332


>gi|237746537|ref|ZP_04577017.1| integrase/recombinase [Oxalobacter formigenes HOxBLS]
 gi|229377888|gb|EEO27979.1| integrase/recombinase [Oxalobacter formigenes HOxBLS]
          Length = 308

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 77/183 (42%), Gaps = 22/183 (12%)

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQS 186
           L   Q L+++D      SH       R+ +++ L+  CGLR+SE      +++  +  + 
Sbjct: 95  LAPHQVLSVLDETKSGNSH------LRDYSMILLMVTCGLRVSEVAQANVEDLNHVGGEP 148

Query: 187 TLRIQGKG--DKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIR----GKPL 238
            L I GKG   K   V +   V  AI  Y      P   +     PLF  +     G  +
Sbjct: 149 VLYIHGKGRDGKTDFVNVPKKVASAIRRYLLSRGSPAGPS-----PLFASVSRNNGGGRM 203

Query: 239 NPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
                 R ++ + +  G      TAH+LRH+  T  L  G  L+ +Q    H  + TTQI
Sbjct: 204 TSHSVSRIVKTMLKSAGFDSRRLTAHSLRHTAVTVSLQAGATLQQVQQFARHSLIMTTQI 263

Query: 298 YTN 300
           Y +
Sbjct: 264 YAH 266


>gi|227539443|ref|ZP_03969492.1| integrase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227240756|gb|EEI90771.1| integrase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 416

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 28/45 (62%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            T HT RH+F T  L+ G  L S+  ++GH  +STTQIY  + S+
Sbjct: 348 VTFHTARHTFGTMFLTEGVPLESLSKMMGHKNISTTQIYAKITSQ 392


>gi|210134634|ref|YP_002301073.1| integrase/recombinase XercD family [Helicobacter pylori P12]
 gi|210132602|gb|ACJ07593.1| integrase/recombinase XercD family [Helicobacter pylori P12]
          Length = 357

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 122/270 (45%), Gaps = 33/270 (12%)

Query: 48  IFLAF-YTEEKITIQTIRQLSYTEIRAFI---SKRRTQKIGDRSLKRSLSGIKSFLKYL- 102
           +FL F Y + +I ++++  L+  ++  F+   +K R       S+ + +  ++ F  YL 
Sbjct: 77  LFLFFEYFDNRIKLKSLHNLAEEQVIDFLFGLAKNRKPS----SMAKYVMYLRQFFDYLD 132

Query: 103 KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
           KKR  + +  + N+   KK   LP+ LN+      +  +L +  H     + RN  IL L
Sbjct: 133 KKRNYSFDFELKNLSFAKKETHLPKHLNKNDFKAFIQALLKY--HPKTSFEKRNQCILLL 190

Query: 163 LYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           +   GLR  EAL L  +NI   ++   L I+GK +K R       + K  L+     P +
Sbjct: 191 IVLGGLRKFEALDLELKNIALENNHYRLLIKGKNNKERY----AYIEKEFLQ----IPLN 242

Query: 221 --LNLNIQLPLFRG--IRGKPLNPGV-----FQRYIRQLRRYLGLPLSTTA---HTLRHS 268
             L+   +L  F+G  +  K  N         + +I ++ +   + + +     H  RHS
Sbjct: 243 AWLSDTKRLKSFKGRFVFKKAKNNTTQKTCSLKGFIAKIFKLSNIDVKSYGLGLHLFRHS 302

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           FAT +     DL      LGH  L +T+IY
Sbjct: 303 FATFIYDETQDLVLTSRALGHSSLLSTKIY 332


>gi|116749796|ref|YP_846483.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
 gi|116698860|gb|ABK18048.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
          Length = 211

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 69/155 (44%), Gaps = 33/155 (21%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI------------RIVPLLPS 205
           A L L Y  G R+ E L +      DD S +  +G   +I            R VPL P 
Sbjct: 58  AFLLLRY-TGARLGEILRV------DDASDIDYEGCEVRIAVRMPAAMRQVLRAVPLPPD 110

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR--YIRQLRRYLGLPLSTTAH 263
           V  A+L+Y         LN + P  +G R   L+ G F+R  Y R     +  PLS   H
Sbjct: 111 VVAAVLDY---------LN-EFPAMQG-RVFALDQGNFRREFYRRAEEARIPRPLSHP-H 158

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            LRH+ A  +L  G  L  +Q ILGH   S+T +Y
Sbjct: 159 ILRHTRAIEMLRAGVPLTVVQDILGHVLSSSTTVY 193


>gi|291527074|emb|CBK92660.1| Site-specific recombinase XerC [Eubacterium rectale M104/1]
          Length = 377

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 53/101 (52%), Gaps = 8/101 (7%)

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           + +R +P+   +   + +YY       N +++   +   + +P++P  +Q       +  
Sbjct: 263 NSLREIPIPDFIYDKLSDYY-------NTSMKGDSYFLKKNQPMDPRTYQNRFHIYIKEA 315

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           G+  +T  H LRH+FAT+ +S+G D +S+  ILGH  ++ T
Sbjct: 316 GIG-NTHFHALRHTFATNCISSGADAKSVSEILGHSNVNIT 355


>gi|268610896|ref|ZP_06144623.1| integrase family protein [Ruminococcus flavefaciens FD-1]
          Length = 399

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 134/350 (38%), Gaps = 69/350 (19%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           F   KE   WL  ++ E    K  L    C  + F  +L  + E K     IR  +    
Sbjct: 40  FRTRKEADEWLSKIKSEISAGKPVL----CSDQPFGEYLDQWLE-KFGSVAIRNSTRMNY 94

Query: 72  RAFISKRRTQKIGDRSLKR-SLSGIKSFLKYLKKR---------KITTESNILNMRNLKK 121
             ++   +  KI D  LK  ++  ++ F+ +LK              T  NI+NM +   
Sbjct: 95  LGYLRHIQRHKIKDIKLKNLTVDDLQEFILFLKNAGQLDTGLPLSAKTLHNIMNMIHKAL 154

Query: 122 SNSLPRALNEKQALTLV--------DNVLLHTSHETKWIDA----RNSAILYLLYGCGLR 169
            +++ R L    A   V        +  +L  +  + ++ A    R    L L+  CGLR
Sbjct: 155 DHAVGRQLIYHNAADYVQLPKVMTPEMRVLTETEISGFVAAMEGDRLQIALVLMLFCGLR 214

Query: 170 ISEALSLT-------------------------------PQNIMDDQSTLRIQGKGDKIR 198
           + E  +LT                               P+ I+  Q T   +GK    R
Sbjct: 215 LGECCALTHDDVRCKDGIYYLNISKSLNRVSNFEAKAGEPKTILRLQETKTSKGK----R 270

Query: 199 IVPLLPSVRKAILEYY----DLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRY 253
            VPLLP V   +L +     +       +  + P L     G  L+PG  ++ ++ +   
Sbjct: 271 QVPLLPEVADKVLAHIQWQKEQAEKSYGMYEENPWLIANELGHYLDPGTVRKKLKAVAES 330

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVN 302
           +G+      H LRH++A+  +  G  L  +  ILGH   + T ++Y +++
Sbjct: 331 IGIT-DFHPHCLRHTYASQAVKAGVPLPYLSDILGHESTAFTAKVYVSLD 379


>gi|160937812|ref|ZP_02085171.1| hypothetical protein CLOBOL_02704 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439251|gb|EDP17004.1| hypothetical protein CLOBOL_02704 [Clostridium bolteae ATCC
           BAA-613]
          Length = 278

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I+ L+   G+RISE ++   +++        I  KG+K+R V +   + + + E+     
Sbjct: 127 IVRLITATGVRISELITFQIEDVHTGHKD--IYSKGNKMRRVYIPRGLVRELQEW----- 179

Query: 219 FDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
                    PLF      P++P G+  ++     RY   P     H+ RH FA + +   
Sbjct: 180 LAATHRSTGPLFLNRFHSPISPSGIRAQFKVFAARYGLDPEVVYPHSFRHRFAKNFIEKC 239

Query: 278 GDLRSIQSILGHFRLSTTQIY 298
           GD+  +  +LGH  + TT+IY
Sbjct: 240 GDISLLSDLLGHESIETTRIY 260


>gi|15675393|ref|NP_269567.1| putative integrase [Streptococcus phage 370.2]
 gi|19746443|ref|NP_607579.1| integrase [Streptococcus pyogenes MGAS8232]
 gi|21910681|ref|NP_664949.1| putative integrase - phage associated [Streptococcus pyogenes
           MGAS315]
 gi|28876315|ref|NP_795489.1| putative integrase [Streptococcus pyogenes phage 315.3]
 gi|28895629|ref|NP_801979.1| integrase (phage associated) [Streptococcus pyogenes SSI-1]
 gi|71911035|ref|YP_282585.1| integrase [Streptococcus pyogenes phage 5005.2]
 gi|94994724|ref|YP_602822.1| DNA integration/recombination/inversion protein [Streptococcus
           phage 10750.3]
 gi|139473486|ref|YP_001128202.1| phage integrase [Streptococcus pyogenes str. Manfredo]
 gi|13622578|gb|AAK34288.1| putative integrase - phage associated [Streptococcus phage 370.2]
 gi|19748645|gb|AAL98078.1| putative integrase [Streptococcus pyogenes MGAS8232]
 gi|21904883|gb|AAM79752.1| putative integrase - phage-associated [Streptococcus pyogenes phage
           315.3]
 gi|28810878|dbj|BAC63812.1| putative integrase (phage associated) [Streptococcus pyogenes
           SSI-1]
 gi|71853817|gb|AAZ51840.1| phi5005.2 integrase [Streptococcus pyogenes phage 5005.2]
 gi|94548232|gb|ABF38278.1| DNA integration/recombination/inversion protein [Streptococcus
           phage 10750.3]
 gi|134271733|emb|CAM29966.1| phage integrase [Streptococcus pyogenes str. Manfredo]
 gi|322412210|gb|EFY03118.1| putative integrase [Streptococcus dysgalactiae subsp. dysgalactiae
           ATCC 27957]
          Length = 380

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 67/162 (41%), Gaps = 24/162 (14%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKI-------RIVP-LLPSVRKAILEYYDL-- 216
           G RI EA+S+ P N       L++ G  D         +  P  L S R+ I+   +L  
Sbjct: 207 GCRIGEAVSIEPCNYESKSRILQLHGTFDHTEGYRNGEKTAPKTLASYRETIMTSRELEI 266

Query: 217 -------CPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST--TAH 263
                     + N N +      LF    G P+    F   +++    L  P++   T+H
Sbjct: 267 LQELEFMNELEKNTNHRYRDMGYLFTTKNGVPIQTNSFNLALKKANERLEDPITKKLTSH 326

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
             RH+  + L  N   L+SI   +GH    TT QIYT+V  K
Sbjct: 327 IFRHTLISRLAENNVPLKSIMERVGHADAKTTAQIYTHVTKK 368


>gi|295425505|ref|ZP_06818197.1| phage integrase family site-specific recombinase [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064796|gb|EFG55712.1| phage integrase family site-specific recombinase [Lactobacillus
           amylolyticus DSM 11664]
          Length = 357

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 6/165 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI+ L+ G G+R+SE  ++  +++    + L +  KG +   VP+       ++EY 
Sbjct: 189 RDLAIIALILGTGIRVSECANVNLKDLNLKDAVLDVTRKGGQRDSVPIAEWTVNYLIEYK 248

Query: 215 DLCPFD-LNLNIQLPLF---RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            +     L    Q   F      + + +     ++ I +     G PL  T H LRH+ A
Sbjct: 249 KIRQQRYLADKTQTAFFLTRWHDQTRRITSNAIEKMINKYSAAFGHPL--TPHKLRHTLA 306

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           + L     D   +   LG    S T +YT+VN +     + EI D
Sbjct: 307 SELYEVTKDQVLVAQQLGQKSTSATDLYTHVNQEKQRAALNEIPD 351


>gi|323485599|ref|ZP_08090940.1| site-specific recombinase XerD [Clostridium symbiosum WAL-14163]
 gi|323401069|gb|EGA93426.1| site-specific recombinase XerD [Clostridium symbiosum WAL-14163]
          Length = 317

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQ 296
           + P   QR  + L R L LP     H LRHSFA+  + NG D +S+  ILGH  +  T  
Sbjct: 239 MEPRGVQRRFKNLLRKLRLP-DVNIHALRHSFASQWIENGFDSKSLSEILGHSSVKITMD 297

Query: 297 IYTNVN 302
           IY + N
Sbjct: 298 IYVHSN 303


>gi|323485863|ref|ZP_08091198.1| hypothetical protein HMPREF9474_02949 [Clostridium symbiosum
           WAL-14163]
 gi|323400851|gb|EGA93214.1| hypothetical protein HMPREF9474_02949 [Clostridium symbiosum
           WAL-14163]
          Length = 410

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 80/189 (42%), Gaps = 42/189 (22%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLR---------IQGKG----------DKIRI 199
           I+ +L G G+R++E   +T  +I   ++T+          I GK              RI
Sbjct: 207 IMTVLLGTGMRVAECTGITKSDINLSENTISVNHNLIYRVIDGKAGFHITTPKTESGTRI 266

Query: 200 VPLL-PSVRKAI---LEYYDLCPFDLNL---NIQLPLFRGIRGKPLNPGVFQRYIRQLR- 251
           +P+L P V + +   +E  D    D  L    +   +FR   G  ++     R I ++  
Sbjct: 267 IPILYPEVAEQLRLQIETIDALYPDDQLVLGGVHGFVFRNRTGSFMSAHNINRAIERISV 326

Query: 252 --------------RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
                         R   L    + H+LRH+F T L  +  D++ IQ ++GH   STT  
Sbjct: 327 TYNMEEMDQAELEDREPDLLPHFSVHSLRHTFCTRLCESTNDVKFIQQVMGHADFSTTMD 386

Query: 297 IYTNVNSKN 305
           IYT++  +N
Sbjct: 387 IYTHITQEN 395


>gi|294852004|ref|ZP_06792677.1| tyrosine recombinase xerC [Brucella sp. NVSL 07-0026]
 gi|294820593|gb|EFG37592.1| tyrosine recombinase xerC [Brucella sp. NVSL 07-0026]
          Length = 308

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 21/148 (14%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA--ILEYYDLCPF 219
            L   G R+ EA+ LT  +I + + T  +  K ++ R VPL    RKA  I       PF
Sbjct: 167 FLVDTGCRLGEAIGLTWNDIQEQRVTFWVT-KSNRSRTVPLTRRARKASHIPRERLKGPF 225

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHLLSNG 277
            +                LN   F++   + +  +GL        H LRH+ A+ L+  G
Sbjct: 226 SM----------------LNQVRFRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVRGG 269

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            D+R +Q  LGH  L  T  Y ++ + +
Sbjct: 270 IDIRRVQMWLGHQTLQMTMRYAHLATHD 297


>gi|290959761|ref|YP_003490943.1| phage integrase [Streptomyces scabiei 87.22]
 gi|260649287|emb|CBG72402.1| putative phage integrase [Streptomyces scabiei 87.22]
          Length = 435

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 67/164 (40%), Gaps = 41/164 (25%)

Query: 165 GCGLRISEALSLTPQNIMDDQSTL-------RIQGK-------GDKIRIVPLLPSVRKAI 210
           GCGLR  E   L+   +  +   L       RI+GK       G K+R VPL  +V  A+
Sbjct: 229 GCGLRQGEIFGLSVDELNYEGGWLTVGHQLKRIRGKYVFALPKGGKVRDVPLPRAVAAAL 288

Query: 211 LEYYD-LCPFDLNLNIQLP---------LFRGIRG-------------KPL--NPGVFQR 245
             + +   P D+ L  + P         LF G+ G             KP     GV  +
Sbjct: 289 RAHSEEFAPVDVTLPWRTPDGPLVTKRLLFSGVEGNHVRVSNFNAHHWKPALAGAGVIPK 348

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
             R   RY   P     H LRH +A+ LL  G ++R++   LGH
Sbjct: 349 PERG-ERYASAP-EDGMHALRHFYASVLLDAGENIRALSQYLGH 390


>gi|254931487|ref|ZP_05264846.1| transposase B [Listeria monocytogenes HPB2262]
 gi|293583039|gb|EFF95071.1| transposase B [Listeria monocytogenes HPB2262]
          Length = 637

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 58/274 (21%), Positives = 108/274 (39%), Gaps = 38/274 (13%)

Query: 49  FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI- 107
           F  F  +    I+ I QL+  E+  + +    + +   ++   +S +  F   +++    
Sbjct: 251 FFNFINKNCKGIRRIHQLTRNEVEQYFNYINLKGLKSSTVTGRISTLDVFFTTIQRYDWK 310

Query: 108 TTESNILNMRN--LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
            T S IL  +    K   +LPR ++E        ++L   + +   ++   + ++ +L  
Sbjct: 311 DTPSKILIFQEDYPKVPKALPRYIDE--------HILEQLNGKLDKLEPYIATMIMVLQE 362

Query: 166 CGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPSVRKAIL--------EY 213
           CG+RISE  +L   +++ D+         Q K  K  I+P+   +   IL        E 
Sbjct: 363 CGMRISELCTLKKGSVITDKEGDCFLKYYQWKMKKEHIIPISKEIAALILVQEQRVADEL 422

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ------RYIRQLRRYLGLPLSTTAHTLRH 267
            D C +         +F    G PL    F+       Y  ++    G      AH  RH
Sbjct: 423 DDGCVY---------VFPRKDGSPLKQDTFRVKLNELAYEEKITDSKGEIFRFHAHAFRH 473

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T +++NG     +Q  LGH     T  Y ++
Sbjct: 474 TVGTRMINNGVPQHIVQKFLGHESPEMTARYAHI 507


>gi|302878684|ref|YP_003847248.1| integrase family protein [Gallionella capsiferriformans ES-2]
 gi|302581473|gb|ADL55484.1| integrase family protein [Gallionella capsiferriformans ES-2]
          Length = 217

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 68/154 (44%), Gaps = 15/154 (9%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----QGKGDKIRIV-PLLPSVRKA 209
           R++ ++ L Y  GLR+SE +SL    +   Q  + I    QG      I  P L ++R+ 
Sbjct: 65  RDATLIMLTYRHGLRVSELVSLRWDQVDLRQGLMHINRLKQGNPSVHPIRGPELRALRR- 123

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +   Y + P+         +F   R  PL     ++ + +      LP +   H LRH+ 
Sbjct: 124 LQRDYPVLPY---------IFSSERKAPLTDDAIRKIVGRAGVEARLPFTVHPHMLRHAC 174

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              L   G D R+IQ  LGH  +  T  YT ++S
Sbjct: 175 GYKLAQAGQDTRAIQHYLGHRNIQHTVRYTQLSS 208


>gi|242278903|ref|YP_002991032.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
 gi|242121797|gb|ACS79493.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
          Length = 439

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 60/291 (20%), Positives = 122/291 (41%), Gaps = 48/291 (16%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD- 85
           +E    ++  +S +   R F   +A +TE       + +++  ++  F+ +    K G+ 
Sbjct: 161 VEYCTGRINPRSVKEKRRHFNTLIAHFTESCF----VEEITAFKMNKFLQEVLKTKTGNM 216

Query: 86  -----RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRALNEKQALTLV 138
                + LK + S    F++   +       N    RN++K      PR +  K+ L  V
Sbjct: 217 VNIIMKHLKAAWSWAGGFVEGFPQ-------NSDPFRNIQKFPEQRHPRYVPPKEDLDKV 269

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK-- 196
            +V           + ++  +L   Y  G R +E  SL  ++++ D + +R+     K  
Sbjct: 270 FDVA----------EGQDRVMLKTFYYTGGRKNEIFSLKWEDVLFDSNQIRLWTNKRKHG 319

Query: 197 ---IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
                ++P++  +++ + E+   CP + +      +F  +R K   P   QRY+ + + +
Sbjct: 320 NRESNLIPMVKELKRILTEWKKACPCESDY-----VFIEVRKKA--PTYGQRYVYR-KGF 371

Query: 254 LGLPLSTTA------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +              H +RH FAT L +NG  L  +Q ++ H   +TT  Y
Sbjct: 372 MERHCDKAGVKRFGFHGIRHLFATTLYNNGQPLAVVQKMMRHKNPNTTVRY 422


>gi|239812975|ref|YP_002941922.1| integrase family protein [Geobacillus sp. WCH70]
 gi|239809040|gb|ACS26103.1| integrase family protein [Geobacillus sp. WCH70]
          Length = 182

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 12/150 (8%)

Query: 161 YLLYGC----GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           Y+L+ C     LR  + LSL  +++         + K  K +I+ + P +R  + EY   
Sbjct: 28  YMLFRCMLYFALRTQDILSLKVKDVRGKYQIYFKEQKTGKTKIIEIHPDLRPELEEYTQ- 86

Query: 217 CPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
                N+     LF   I+G+PL+     R ++   +  GLP S + H LR +F  H   
Sbjct: 87  -----NMADDDWLFPSRIKGRPLSREQAFRRLQAAGKKCGLP-SLSGHVLRKTFCYHAYK 140

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           NG  L  +  +L H   + T+ Y  +  ++
Sbjct: 141 NGVPLHILSELLNHSSEAVTRRYIGLQQED 170


>gi|297619031|ref|YP_003707136.1| integrase family protein [Methanococcus voltae A3]
 gi|297378008|gb|ADI36163.1| integrase family protein [Methanococcus voltae A3]
          Length = 317

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 70/159 (44%), Gaps = 8/159 (5%)

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
           ++  +   R++ +L  L+  G R+SE L+   ++       + I    +      +L + 
Sbjct: 144 NKNNYTQDRDAVLLRTLWDTGCRVSEILNSKLKDYDGKNGVIVITKSKNYTERRVILAND 203

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQRYIRQLRRY--LGLPLST 260
            K  L Y  +   + N N    LF+ + G+ +N      VF   +++L+    L      
Sbjct: 204 TKEALNY--IITKNRNKNDNDYLFQKLNGEQINRNAIYRVFNACVKELKAEGKLAKNRRI 261

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
             H++RH    +LL+ G +L  +   +GH R+ TT IY 
Sbjct: 262 VLHSIRHGCCVNLLTKGVNLDEVSRYMGHNRVETTMIYA 300


>gi|15894591|ref|NP_347940.1| integrase XerD family protein [Clostridium acetobutylicum ATCC 824]
 gi|15024240|gb|AAK79280.1|AE007643_3 Integrase XerD family protein (similarity only with C-term. part
           [Clostridium acetobutylicum ATCC 824]
          Length = 164

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           GK ++P ++   I+++ +   +  +   H LRH+ AT LL  G DL+ IQ  LGH  ++T
Sbjct: 79  GKYIHPMLYTNKIKKVLKAAKINKNVRFHDLRHTNATLLLQQGTDLKVIQERLGHKDIAT 138

Query: 295 T-QIYTNVN 302
           T  IY++VN
Sbjct: 139 TANIYSHVN 147


>gi|328956474|ref|YP_004373860.1| putative bacteriophage integrase [Carnobacterium sp. 17-4]
 gi|328672798|gb|AEB28844.1| putative bacteriophage integrase [Carnobacterium sp. 17-4]
          Length = 183

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 11/152 (7%)

Query: 153 DARNSAILYLL-YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           +A     L+L+    GLR+S+ + L  Q+++  ++   ++ K  K RI+  L S++  I 
Sbjct: 26  NADRDVFLFLIGINSGLRMSDIVKLKKQDLISSKNPRIVEKKTGKTRIL-YLSSLQDLIQ 84

Query: 212 EYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           EY  DL P D        LF   +G  +      +  +++ + LG       HTLR +F 
Sbjct: 85  EYTKDLKPEDY-------LFPSTKGGHVEVNTVYQMFQKVAKLLGRD-DIGTHTLRKTFG 136

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            H      D+ ++  I GH     T+ Y  +N
Sbjct: 137 YHYYKKTKDVATLMEIFGHSSEKITKRYIGIN 168


>gi|300907179|ref|ZP_07124842.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|301303606|ref|ZP_07209728.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|300401054|gb|EFJ84592.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|300841105|gb|EFK68865.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|315257836|gb|EFU37804.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 85-1]
          Length = 288

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 28/186 (15%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--------TKWIDARNSAILYLLYGCGLRISEALS 175
           S P  L   +  T+ +  +   +HE         K  D   + ++ +    G R  EA++
Sbjct: 91  SYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICLSTGARWREAVN 150

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           LT   +   + T  ++ KG K R +P+   + + I+    L  F+               
Sbjct: 151 LTRSQVTKYRITF-VRTKGKKNRSIPISKELYEEIMA---LDGFNF-------------- 192

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  FQ      +  + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T
Sbjct: 193 --FTDCYFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMT 250

Query: 296 QIYTNV 301
             Y ++
Sbjct: 251 MRYAHL 256


>gi|258624874|ref|ZP_05719802.1| Integrase [Vibrio mimicus VM603]
 gi|258582872|gb|EEW07693.1| Integrase [Vibrio mimicus VM603]
          Length = 133

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 35/55 (63%)

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           YI + +  + LP    +H LRH+FA+H + NGG++  ++ +LGH  +S T  Y++
Sbjct: 61  YILKNKLGITLPSGQASHVLRHTFASHFMMNGGNILVLRDVLGHADISMTMRYSH 115


>gi|226305786|ref|YP_002765746.1| integrase [Rhodococcus erythropolis PR4]
 gi|226184903|dbj|BAH33007.1| putative integrase [Rhodococcus erythropolis PR4]
          Length = 413

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 85/208 (40%), Gaps = 21/208 (10%)

Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLR 169
            I   R + ++ S    LN  +   LV+           WI ++ +    ++ G   GLR
Sbjct: 157 GIAKRRKVDRAISRSELLNADEIWQLVETASAGVQTGRNWIASQKTLARMIIVGAATGLR 216

Query: 170 ISE--------------ALSLTPQNIMDDQSTLRIQGK-GDKIRIVPLLPSVRKAILEYY 214
             E               L++T Q+       L    K     R++PL P    AI    
Sbjct: 217 AGEIAGLRIRSVDFLRRELAVTEQSKSGTSEFLWAPLKTAAASRVIPL-PDA--AIGALS 273

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           D    + N +  +P+F   R +  +     +  + LR   GL    T H+LRH +A+ L+
Sbjct: 274 DELRENPNSDRSMPVFLTARQRMWSSSTVGKSFQALRDRCGLDDEVTWHSLRHFYASALI 333

Query: 275 SNGGDLRSIQSILGHFRLSTT-QIYTNV 301
             G  ++++Q  LGH +  TT ++Y ++
Sbjct: 334 HAGASVKTVQVRLGHEKAETTLEVYAHL 361


>gi|332884799|gb|EGK05055.1| hypothetical protein HMPREF9456_03208 [Dysgonomonas mossii DSM
           22836]
          Length = 405

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 9/88 (10%)

Query: 223 LNIQLPLFRGIRGKPLNPGVF--------QRYIRQLRRYLGLPLSTTAHTLRHSFATHL- 273
           L+I   +    +GK  N  V           Y++++     +  + T H  RHSFAT + 
Sbjct: 297 LDIPYKILEKYKGKQKNGKVLPVITNQKMNDYLKEIAAICNIDKTLTFHIARHSFATSIA 356

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LSNG  + S+  +LGH  + TTQIY  +
Sbjct: 357 LSNGVPIESVSKMLGHKDIKTTQIYAKI 384


>gi|312887736|ref|ZP_07747325.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311299831|gb|EFQ76911.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 412

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           RY++ + +   +    T H  RH+FAT + L NG  + ++  +LGH  L TTQIY+ +  
Sbjct: 336 RYLKAIAKEAKVDKKLTFHIARHTFATTITLENGVPMETVSGMLGHASLRTTQIYSKIKK 395

Query: 304 K 304
           K
Sbjct: 396 K 396


>gi|282877849|ref|ZP_06286661.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281300060|gb|EFA92417.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 431

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 9/161 (5%)

Query: 158 AILYLLYGC--GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVRKAIL 211
           A L  ++ C  GL IS+  +L  ++I    D Q  +R + +  K+  IVPL P + + I+
Sbjct: 238 ARLMFVFSCFTGLAISDMENLEYKHIQTAADGQMYIRKERQKTKVEFIVPLHP-IAETII 296

Query: 212 EYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
            +    P   ++   ++      +  +  +  V    +  + +  G+    + H  RH+F
Sbjct: 297 SHCQKEPERSEVQQTVKEKGDHLVFHRDCSRSVMDAKLSIVGKACGICQRLSYHMARHTF 356

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            T  LS G  + SI  ++GH  +S+TQ+Y  V  +   + M
Sbjct: 357 GTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDRKISEDM 397


>gi|257065330|ref|YP_003145002.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
 gi|256792983|gb|ACV23653.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
          Length = 443

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           F+R+ R+ R   GLP     H LRH+ AT LL+ G D++++Q+ +GH   S T   Y + 
Sbjct: 355 FERWWREFRTRAGLP-GLRYHELRHTQATQLLAAGVDVKTVQNRMGHANASITLDWYAHA 413

Query: 302 NSKN 305
             +N
Sbjct: 414 QPEN 417


>gi|167772803|ref|ZP_02444856.1| hypothetical protein ANACOL_04185 [Anaerotruncus colihominis DSM
           17241]
 gi|167665281|gb|EDS09411.1| hypothetical protein ANACOL_04185 [Anaerotruncus colihominis DSM
           17241]
          Length = 526

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 2/68 (2%)

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT- 295
           P+ PG  +R ++ +    G       H LRH+FAT  L NG D++++ ++LGH   +TT 
Sbjct: 298 PMTPGAVRRRLQIILERAGCK-RIRFHDLRHTFATLSLENGMDVKTLSAMLGHVSAATTL 356

Query: 296 QIYTNVNS 303
            IYT+V  
Sbjct: 357 DIYTHVTG 364


>gi|89896044|ref|YP_519531.1| hypothetical protein DSY3298 [Desulfitobacterium hafniense Y51]
 gi|89335492|dbj|BAE85087.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 108

 Score = 46.6 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 237 PLNPGVF-QRYIRQLRRYL-GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           P N  VF ++Y  Q R++   +P    AH  RHS A HL  +G  L  I+  LGH  ++T
Sbjct: 3   PGNAAVFIKKYSSQARKHCPEIPDKIHAHLFRHSRAMHLYQSGIPLSYIKDFLGHVSVTT 62

Query: 295 TQIYTNVNS 303
           T IY + ++
Sbjct: 63  TSIYASADT 71


>gi|323691674|ref|ZP_08105936.1| hypothetical protein HMPREF9475_00798 [Clostridium symbiosum
           WAL-14673]
 gi|323504308|gb|EGB20108.1| hypothetical protein HMPREF9475_00798 [Clostridium symbiosum
           WAL-14673]
          Length = 317

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQ 296
           + P   QR  + L R L LP     H LRHSFA+  + NG D +S+  ILGH  +  T  
Sbjct: 239 MEPRGVQRRFKNLLRKLRLP-DVNIHALRHSFASQWIENGFDSKSLSEILGHSSVKITMD 297

Query: 297 IYTNVN 302
           IY + N
Sbjct: 298 IYVHSN 303


>gi|161507605|ref|YP_001577559.1| site-specific tyrosine recombinase XerS [Lactobacillus helveticus
           DPC 4571]
 gi|160348594|gb|ABX27268.1| Phage integrase-recombinase [Lactobacillus helveticus DPC 4571]
          Length = 344

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 6/154 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI+ L+ G G+R+SE   +  Q++    + L +  KG +   VP+       I +Y 
Sbjct: 173 RDMAIIALILGTGIRVSECAGVDMQDLNIKDAILDVTRKGGQKDSVPIAEWTLDYIKKYK 232

Query: 215 DLCPFDLNLNIQLPLFRGIR----GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            +       + +   F   R     K +     ++ + +     G PL  T H LRH+ A
Sbjct: 233 KIRAERYMADPKQTAFFLTRWHNQTKRMTTNAIEKMVNKYSASFGHPL--TPHKLRHTLA 290

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + L +   D   +   LG    + T +YT+V+ K
Sbjct: 291 SELYAVTKDQVLVAQQLGQKGTTATDLYTHVDQK 324


>gi|86742414|ref|YP_482814.1| phage integrase-like SAM-like protein [Frankia sp. CcI3]
 gi|86569276|gb|ABD13085.1| phage integrase-like SAM-like [Frankia sp. CcI3]
          Length = 323

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 90/208 (43%), Gaps = 30/208 (14%)

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
            G K FL ++ K +      I     LK +  LPR L   +   ++D+            
Sbjct: 131 GGWKPFLHHVGKGRPQPRRVI----ALKTAKKLPRVLAAAEVQAVLDSC----------T 176

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNI-----------MDDQSTLRIQGKGDKIRIVP 201
             R+  +  +LY  G+R+ EAL L   +I            D+ +  R + +G   R+VP
Sbjct: 177 RLRDRFLFAVLYDTGMRVGEALGLRHDDIDAAACEVTVVARDNDNGARSKSRGR--RMVP 234

Query: 202 LLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +   + +   +Y      DL+ + + + LF   RG+ L+       +++LR+   +    
Sbjct: 235 VSAGLVRLYADYLHGEYGDLDSDYVFVNLFAEPRGQALSYPASYDLVKRLRKRTRIDFDP 294

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILG 288
             H  RH++AT LL +G  L  + ++LG
Sbjct: 295 --HWYRHTYATRLLRDGVPLEVVSTLLG 320


>gi|23501523|ref|NP_697650.1| phage integrase family site specific recombinase [Brucella suis
           1330]
 gi|62289597|ref|YP_221390.1| phage integrase family site specific recombinase [Brucella abortus
           bv. 1 str. 9-941]
 gi|82699526|ref|YP_414100.1| phage integrase [Brucella melitensis biovar Abortus 2308]
 gi|161618609|ref|YP_001592496.1| tyrosine recombinase xerC [Brucella canis ATCC 23365]
 gi|163842909|ref|YP_001627313.1| tyrosine recombinase xerC [Brucella suis ATCC 23445]
 gi|189023854|ref|YP_001934622.1| Phage integrase [Brucella abortus S19]
 gi|254688916|ref|ZP_05152170.1| Phage integrase [Brucella abortus bv. 6 str. 870]
 gi|254693398|ref|ZP_05155226.1| Phage integrase [Brucella abortus bv. 3 str. Tulya]
 gi|254697049|ref|ZP_05158877.1| Phage integrase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254703973|ref|ZP_05165801.1| Phage integrase [Brucella suis bv. 3 str. 686]
 gi|254707651|ref|ZP_05169479.1| Phage integrase [Brucella pinnipedialis M163/99/10]
 gi|254709767|ref|ZP_05171578.1| Phage integrase [Brucella pinnipedialis B2/94]
 gi|254729947|ref|ZP_05188525.1| Phage integrase [Brucella abortus bv. 4 str. 292]
 gi|256031257|ref|ZP_05444871.1| Phage integrase [Brucella pinnipedialis M292/94/1]
 gi|256257164|ref|ZP_05462700.1| Phage integrase [Brucella abortus bv. 9 str. C68]
 gi|256369075|ref|YP_003106583.1| site-specific recombinase, phage integrase family [Brucella microti
           CCM 4915]
 gi|260168393|ref|ZP_05755204.1| site-specific recombinase, phage integrase family protein [Brucella
           sp. F5/99]
 gi|260566779|ref|ZP_05837249.1| phage integrase [Brucella suis bv. 4 str. 40]
 gi|261213648|ref|ZP_05927929.1| phage integrase [Brucella abortus bv. 3 str. Tulya]
 gi|261315145|ref|ZP_05954342.1| phage integrase [Brucella pinnipedialis M163/99/10]
 gi|261317299|ref|ZP_05956496.1| phage integrase [Brucella pinnipedialis B2/94]
 gi|261754625|ref|ZP_05998334.1| phage integrase [Brucella suis bv. 3 str. 686]
 gi|261757854|ref|ZP_06001563.1| phage integrase [Brucella sp. F5/99]
 gi|265988337|ref|ZP_06100894.1| phage integrase [Brucella pinnipedialis M292/94/1]
 gi|297248011|ref|ZP_06931729.1| tyrosine recombinase xerC [Brucella abortus bv. 5 str. B3196]
 gi|23347432|gb|AAN29565.1| site-specific recombinase, phage integrase family [Brucella suis
           1330]
 gi|62195729|gb|AAX74029.1| site-specific recombinase, phage integrase family [Brucella abortus
           bv. 1 str. 9-941]
 gi|82615627|emb|CAJ10614.1| Phage integrase:Phage integrase, N-terminal SAM-like [Brucella
           melitensis biovar Abortus 2308]
 gi|161335420|gb|ABX61725.1| Tyrosine recombinase xerC [Brucella canis ATCC 23365]
 gi|163673632|gb|ABY37743.1| Tyrosine recombinase xerC [Brucella suis ATCC 23445]
 gi|189019426|gb|ACD72148.1| Phage integrase [Brucella abortus S19]
 gi|255999235|gb|ACU47634.1| site-specific recombinase, phage integrase family [Brucella microti
           CCM 4915]
 gi|260156297|gb|EEW91377.1| phage integrase [Brucella suis bv. 4 str. 40]
 gi|260915255|gb|EEX82116.1| phage integrase [Brucella abortus bv. 3 str. Tulya]
 gi|261296522|gb|EEY00019.1| phage integrase [Brucella pinnipedialis B2/94]
 gi|261304171|gb|EEY07668.1| phage integrase [Brucella pinnipedialis M163/99/10]
 gi|261737838|gb|EEY25834.1| phage integrase [Brucella sp. F5/99]
 gi|261744378|gb|EEY32304.1| phage integrase [Brucella suis bv. 3 str. 686]
 gi|264660534|gb|EEZ30795.1| phage integrase [Brucella pinnipedialis M292/94/1]
 gi|297175180|gb|EFH34527.1| tyrosine recombinase xerC [Brucella abortus bv. 5 str. B3196]
          Length = 308

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 21/148 (14%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA--ILEYYDLCPF 219
            L   G R+ EA+ LT  +I + + T  +  K ++ R VPL    RKA  I       PF
Sbjct: 167 FLVDTGCRLGEAIGLTWNDIQEQRVTFWVT-KSNRSRTVPLTRRARKASHIPRERLKGPF 225

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHLLSNG 277
            +                LN   F++   + +  +GL        H LRH+ A+ L+  G
Sbjct: 226 SM----------------LNQVRFRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVRGG 269

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            D+R +Q  LGH  L  T  Y ++ + +
Sbjct: 270 IDIRRVQMWLGHQTLQMTMRYAHLATHD 297


>gi|310658637|ref|YP_003936358.1| tyrosine recombinase xerd-like protein [Clostridium sticklandii DSM
           519]
 gi|308825415|emb|CBH21453.1| putative Tyrosine recombinase xerD-like protein [Clostridium
           sticklandii]
          Length = 293

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 98/225 (43%), Gaps = 26/225 (11%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           FIS+     I + + KR L+ IK    YL +  I   ++I  + NL   N       EK+
Sbjct: 58  FISQ---SSISESTKKRRLASIKKAYYYLIQNNIVA-NDIKFLSNLNSINI------EKK 107

Query: 134 ALTLVDNVL--------LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           ++   DN+L        L+T +++  I  R+ AI+  +Y  GLR SE + L  ++I  + 
Sbjct: 108 SIVSSDNILSEEEIDILLNTPNDS--ISLRDKAIIETIYTLGLRTSEIVELKVRDIDLNL 165

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEY--YDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           + + I     K +   L   +  +++ Y  Y+   F L  N    LF     + L+    
Sbjct: 166 NLISIYRNSIK-KTFSLDSDINSSLINYLNYERLEFKLETN---YLFLNKNKEKLSRQSV 221

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
            + I +      +        LR SFA HL+ NG  + ++  I G
Sbjct: 222 WKIIAKYAENQNIETKVNPKILRKSFALHLIKNGVSINTVSEIFG 266


>gi|304382548|ref|ZP_07365043.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
 gi|304336379|gb|EFM02620.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
          Length = 422

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 73/163 (44%), Gaps = 28/163 (17%)

Query: 167 GLRISEALSLTPQNIM---DDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY------DL 216
           GL   +   L P++I+   D    +RI+  K D   I+PLLP + K IL  Y      D 
Sbjct: 257 GLARVDMQRLKPKHIIHNADGTEEIRIKRQKTDVEAIIPLLP-IAKQILSLYIKDKKADE 315

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LS 275
             F  NL I+   F  +     N G   R  + L          T H  RH+F+T + LS
Sbjct: 316 LIFP-NLTIRKASFACV-----NIGQICRIDKGL----------TFHMARHTFSTTICLS 359

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           NG  + ++  +LGH  + TTQIY  +      + M  + D+ H
Sbjct: 360 NGISMETLSKMLGHSNIGTTQIYGKITDHKIQEDMTALTDREH 402


>gi|296115374|ref|ZP_06834012.1| phage integrase family protein [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978112|gb|EFG84852.1| phage integrase family protein [Gluconacetobacter hansenii ATCC
           23769]
          Length = 383

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 67/149 (44%), Gaps = 17/149 (11%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS---VRKAILEYYDL 216
           L +L GC LR  E  +L   ++  DQS LR+       +IV +  +   V KAI    D 
Sbjct: 230 LLILTGCRLR--EIQTLQWSHVFFDQSELRLPDSKTGAKIVQIGQAAINVIKAITRLED- 286

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
            P+ +            R K       Q+  R++R+  GL      H LRHSFA+  L  
Sbjct: 287 NPYVITG----------RKKGGYLTDLQKPWRRIRKAAGLD-DVRIHDLRHSFASDALEM 335

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           G DL  I  +LGH  + TT  Y ++  +N
Sbjct: 336 GADLTMIGHMLGHSDIKTTARYAHLKREN 364


>gi|302347050|ref|YP_003815348.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302150592|gb|ADK96853.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 308

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 27/178 (15%)

Query: 142 LLHTSHETKWIDA-------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           +L  +H  K +D        RN  I Y+    GLRI E   L   +I  D   + +    
Sbjct: 109 VLTVTHHKKILDFIKQNFTFRNLGI-YISLTTGLRIGEVCGLKWSDINTDSGIITVNRTI 167

Query: 195 DKIRIV-------------PLLPSVRKAILEYYDLC----PFDLNLNIQLPLFRGIRGKP 237
           ++I IV             P   +  + I    +L     P    +NI   +      KP
Sbjct: 168 ERIYIVEGERRHTELVINSPKTKNSCREIPMNKELLAMVKPLKKVVNINFYVLTN-EEKP 226

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             P  ++ Y  +L ++L +P     H LRHSFAT  + +  + +++  +LGH  ++TT
Sbjct: 227 TEPRTYRNYYHRLMKHLDIP-RLKYHGLRHSFATRCIESNCEYKTVSVLLGHANITTT 283


>gi|300777414|ref|ZP_07087272.1| integrase [Chryseobacterium gleum ATCC 35910]
 gi|300502924|gb|EFK34064.1| integrase [Chryseobacterium gleum ATCC 35910]
          Length = 416

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 28/45 (62%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            T HT RH+F T  L+ G  L S+  ++GH  +STTQIY  + S+
Sbjct: 348 VTFHTARHTFGTMFLTEGVPLESLSKMMGHKNISTTQIYAKITSQ 392


>gi|303236846|ref|ZP_07323425.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483014|gb|EFL46030.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 439

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 9/152 (5%)

Query: 158 AILYLLYGC--GLRISEALSLTP---QNIMDDQSTLRIQGKGDKIR-IVPLLPSVRKAIL 211
           A L  ++ C  GL IS+  +L     Q   D Q  +R + +  K+  IVPL P + +AI+
Sbjct: 238 ARLMFVFSCFTGLAISDMENLEYRHFQTAADGQQYIRKERQKTKVEFIVPLHP-IAEAII 296

Query: 212 EYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
            +   +    + +L ++    R +  +  +  V    +  + +  G+    + H  RH+F
Sbjct: 297 SHCRKEQERSEEHLMVKEKGDRLVFHRDCSRSVMDTKLSIVGKACGIRERLSYHMARHTF 356

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T  LS G  + SI  ++GH  +S+TQIY  V
Sbjct: 357 GTMSLSAGIPIESIAKMMGHASISSTQIYAQV 388


>gi|265750810|ref|ZP_06086873.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263237706|gb|EEZ23156.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 405

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 26/163 (15%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI-----VPLLPSVRKAILEYY 214
            L+GC  GL   +  +LTP++   D S  RI  K  +++      +PLLP + K IL+ Y
Sbjct: 252 FLFGCFTGLSYIDIKTLTPEHFEKD-SAGRIWIKKRRVKTGVLSRIPLLP-IAKLILDKY 309

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                            G +  P+ +P    +Y++ +    G+      HT RH+FA+ +
Sbjct: 310 K---------------GGEKLLPIQDPADINKYLKDIAILCGINKRICFHTSRHTFASTV 354

Query: 274 -LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            L+N   L  +  +LGH     T  Y  +  K  G+ M ++ D
Sbjct: 355 TLANNISLEVVSKMLGHTNTRMTAHYAKLIDKCIGEQMDKLMD 397


>gi|261879700|ref|ZP_06006127.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270333721|gb|EFA44507.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 422

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 73/163 (44%), Gaps = 28/163 (17%)

Query: 167 GLRISEALSLTPQNIM---DDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY------DL 216
           GL   +   L P++I+   D    +RI+  K D   I+PLLP + K IL  Y      D 
Sbjct: 257 GLARVDMQRLKPKHIIRNADGTEEIRIKRQKTDVEAIIPLLP-IAKQILSLYIKNKKADD 315

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LS 275
             F  NL I+   F  +     N G   R  + L          T H  RH+F+T + LS
Sbjct: 316 LIFP-NLTIRKASFACV-----NIGQICRIEKGL----------TFHMARHTFSTTICLS 359

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           NG  + ++  +LGH  + TTQIY  +      + M  + D+ H
Sbjct: 360 NGISMETLSKMLGHSNIGTTQIYGKITDHKIQEDMTALTDREH 402


>gi|119714858|ref|YP_921823.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119535519|gb|ABL80136.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 332

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 96/230 (41%), Gaps = 23/230 (10%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           LS ++ F  YL    +        +    K  ++P   ++      +D +L  T+ +  +
Sbjct: 82  LSLVRRFAGYLNANDVDVPVIPRGLLPAPKPRAVPFIYSQHD----LDALL--TACDRVF 135

Query: 152 IDARNSA----ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
            D R +A    ++ LL   GLRI EAL L   ++      L I+      R+VPL P+  
Sbjct: 136 TDERIAATMRTVIGLLAATGLRIGEALKLRVGDVDHVNDLLVIKAAKSVERLVPLHPTTT 195

Query: 208 KAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA---- 262
            A+++Y  L      N +   P+F    G       F +  R +R   GL     A    
Sbjct: 196 AALMDYITLPARTATNPDPDGPVFVTANGTGYIYVSFYKMFRAVREEAGLTPRGRARPRL 255

Query: 263 HTLRHSFAT-HL---LSNGGDLRSIQSI----LGHFRLSTTQIYTNVNSK 304
           H LRH+FAT H+    ++ GD   + S+    LGH   + T  Y +   +
Sbjct: 256 HDLRHTFATAHMTAAYAHDGDPERVLSLLATWLGHSDATHTYWYLSATGE 305


>gi|312875769|ref|ZP_07735763.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2053A-b]
 gi|311088704|gb|EFQ47154.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2053A-b]
          Length = 329

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 53/251 (21%), Positives = 106/251 (42%), Gaps = 25/251 (9%)

Query: 61  QTIRQLSYTEIRAFISK----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           + +R++   +IR ++++    + + K+   +++R LS   SF  +L+      +S    +
Sbjct: 88  KNVREMETDDIRTYLTEYQQEKNSSKVTVDNIRRILS---SFFSWLEDENYILKSPARRI 144

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             +K + ++     ++    + D+            + R+ A++ +L   G+R+ E + L
Sbjct: 145 HKVKAALTIKETYTDEALEKMRDSCE----------EPRDLALIDILTSTGMRVGELVLL 194

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG- 235
              +I  ++    + GKG K R+V      +  +L Y      D        LF  +R  
Sbjct: 195 NRDDINFEERECVVFGKGSKERMVYFDARTKIHLLTYLQGRTDD-----NPALFVSLRAP 249

Query: 236 -KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              L  G  +  +R+L   L +      H  R + AT  +  G  +  +Q +LGH R+ T
Sbjct: 250 HDRLKIGGVECRLRELGNKLDIE-KVHPHKFRRTLATMAIDKGMPIEQLQQLLGHKRIDT 308

Query: 295 TQIYTNVNSKN 305
           T  Y  V   N
Sbjct: 309 TLQYAMVKQSN 319


>gi|187933324|ref|YP_001886146.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum B str. Eklund 17B]
 gi|187721477|gb|ACD22698.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum B str. Eklund 17B]
          Length = 358

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 75/186 (40%), Gaps = 29/186 (15%)

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           K+ L L  + L     + K ID     +  +   CGLRI E   LT  +I      L + 
Sbjct: 170 KEKLALTKDELFKLLDKLKNIDDDIYLVSLVAGTCGLRIGEIEGLTWSDIKIKTMELDVN 229

Query: 192 GKGDKI---------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
            +  K+               R+VPL     K +L+Y +  P DL   I +         
Sbjct: 230 KQWKKLKDGTIGFGNLKNNRRRMVPLPTDTLKKLLKYKESHPTDLTNRIII--------- 280

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLSTT 295
            LN       +    +  G     T H LRH++AT L+ SN  D ++I  ILGH    T 
Sbjct: 281 -LNKYTLANKLDSTLKKAG---GVTIHELRHTYATILIASNTMDFKTIAQILGHNVEQTL 336

Query: 296 QIYTNV 301
           + Y++V
Sbjct: 337 RTYSHV 342


>gi|218528144|ref|YP_002418960.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218520447|gb|ACK81032.1| integrase family protein [Methylobacterium chloromethanicum CM4]
          Length = 189

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 10/157 (6%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------GKGDKIRIVPLLPSVR 207
           RN   L L Y  GLR+ E  SL   +++D +  +R Q        KG   R+V L   +R
Sbjct: 27  RNRMALMLSYLAGLRVGEIASLRWGDLLDGEGKVREQLRLSAAVTKGGHARVVFLNVRLR 86

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + + +Y           +  P+    +  P +     + +R      GL    ++H+ R 
Sbjct: 87  REVEQYR--ASLAQPPTLPQPVLVTQKRSPFSANTLCQLMRGWYDLAGLD-GGSSHSGRR 143

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            F T L   G   ++I  + GH  LSTTQ Y +VN +
Sbjct: 144 WFITRLAHAGISPKAIMMLAGHRHLSTTQRYIDVNDE 180


>gi|149923898|ref|ZP_01912286.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149815241|gb|EDM74788.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 392

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 58/134 (43%), Gaps = 22/134 (16%)

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K DKIR VPL   +  A+          L  + +L L+RG  G+ +         RQ  R
Sbjct: 246 KYDKIRTVPLTRRLADAL--------GALPRDCELVLYRGSEGREIPTS------RQTGR 291

Query: 253 YLGLPLSTTA-------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +       A       HTLRH+F +HL   G   R IQ + GH  L TTQ Y ++ S  
Sbjct: 292 TMLEKAQDAAKLRRRGPHTLRHTFCSHLAMRGAAARVIQQLAGHASLVTTQRYMHL-SPG 350

Query: 306 GGDWMMEIYDQTHP 319
             +  + + +Q  P
Sbjct: 351 ATEAAIALLEQPAP 364


>gi|186474379|ref|YP_001863350.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198338|gb|ACC76300.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 508

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 121/297 (40%), Gaps = 47/297 (15%)

Query: 41  CDTRQFLIFLAFYTEEKITI--QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSF 98
           CDTRQ L  L+  T   +    Q +RQ +             +K+ + +  R+L+ I S 
Sbjct: 198 CDTRQ-LGPLSDLTRHDLLAYRQALRQPAQDA-----PADAHRKVSEATQSRALAVIASL 251

Query: 99  LKYLKKRKITTESNILNMRNLKKSNS--LPRALNEKQALTLVDNVLLHTSH-ETKWIDAR 155
            +Y  +    T +    +    +S +  +P+ +     L   D  +  TS  E   + AR
Sbjct: 252 FRYWTETGFLTANPAAGLVRGGRSRAGFVPQRMLPPALLAACDAWVAETSPGEDALVAAR 311

Query: 156 NSAILYLLYGCGLRISEAL----SLTPQNIMD-----DQSTLRIQGKGDKIRIVPLLPSV 206
             AI  L    G+R+ E +    +  P+  +D     +Q TL + GKG K R +P LP+V
Sbjct: 312 RRAIWTLYRYAGVRLVELVWSDDAHLPKLDVDPIGTHEQWTLHVLGKGRKPRAIP-LPAV 370

Query: 207 RKAILEYY--------DLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQR----YIRQLRRY 253
              +L  Y           PF+     Q  L  G++G  L   G++      ++    R 
Sbjct: 371 CVPVLRTYRQLRGLPPQPPPFE-----QAALIHGLKGGSLKGSGLYDEVKAIFVAAADRL 425

Query: 254 LGLPLSTTA-------HTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVN 302
                +  A       H LRH +A  L+ +    L + Q++LGH  + TT  Y   +
Sbjct: 426 AKTDHAGAARLRQASPHWLRHGYARALVVDHQVPLPAAQALLGHASVQTTAAYAKTD 482


>gi|260101469|ref|ZP_05751706.1| phage integrase family site-specific recombinase [Lactobacillus
           helveticus DSM 20075]
 gi|260084723|gb|EEW68843.1| phage integrase family site-specific recombinase [Lactobacillus
           helveticus DSM 20075]
          Length = 350

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 6/154 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI+ L+ G G+R+SE   +  Q++    + L +  KG +   VP+       I +Y 
Sbjct: 189 RDMAIIALILGTGIRVSECAGVDMQDLNIKDAILDVTRKGGQKDSVPIAEWTLDYIKKYK 248

Query: 215 DLCPFDLNLNIQLPLFRGIR----GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            +       + +   F   R     K +     ++ + +     G PL  T H LRH+ A
Sbjct: 249 KIRAERYMADPKQTAFFLTRWHNQTKRMTTNAIEKMVNKYSASFGHPL--TPHKLRHTLA 306

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + L +   D   +   LG    + T +YT+V+ K
Sbjct: 307 SELYAVTKDQVLVAQQLGQKGTTATDLYTHVDQK 340


>gi|218263823|ref|ZP_03477799.1| hypothetical protein PRABACTJOHN_03489 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222496|gb|EEC95146.1| hypothetical protein PRABACTJOHN_03489 [Parabacteroides johnsonii
           DSM 18315]
          Length = 333

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 19/147 (12%)

Query: 163 LYGC--GLRISEALSLTPQN--IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           L+ C  GLRIS+ L L  ++  +  DQ    I+   +K      LP  ++A+    +LC 
Sbjct: 190 LFACMTGLRISDILKLDWRDFEVGPDQGYY-IRICTEKTETEATLPISQEAL----ELCG 244

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
                 +   L R +   PL   + +  IR+           T H  RHS+A   +S G 
Sbjct: 245 EGGTGKVFKGLTRSMTHHPLKQWIAEAGIRK---------HITFHCFRHSYAVIQISLGT 295

Query: 279 DLRSIQSILGHFRLSTTQIYTN-VNSK 304
           D+ ++  +L H  ++TTQIY + VNSK
Sbjct: 296 DIYTVSKMLTHKNVTTTQIYADLVNSK 322


>gi|328947969|ref|YP_004365306.1| integrase family protein [Treponema succinifaciens DSM 2489]
 gi|328448293|gb|AEB14009.1| integrase family protein [Treponema succinifaciens DSM 2489]
          Length = 330

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 106/262 (40%), Gaps = 55/262 (20%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRS------LKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
           Q+   ++R ++S    QKI + S      ++R LS   +F  +L+      +S +  +  
Sbjct: 93  QIETEDLRKYLSD--YQKINNASRMTIDNVRRILS---TFFTWLEDENYILKSPVRRIHK 147

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           +K +  +    +++  + L DN              R+ AI+ +L   G+R+SE ++L  
Sbjct: 148 IKTAKLIKETYSDETLVLLRDNCKT----------TRDLAIIDMLASTGMRVSELVTLNK 197

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           Q++        + GKG K R V                  FD    I L  +   R K  
Sbjct: 198 QDVDFVNRECVVFGKGSKERPV-----------------YFDARTKIHLLNYLNER-KDN 239

Query: 239 NPGVF---------------QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
           NP +F               +  +R+L R L +      H  R + AT  +  G  +  +
Sbjct: 240 NPALFVSLLEPHNRLQISGVEITLRKLGRSLNIQ-KVHPHKFRRTLATQAIDKGMPIEQV 298

Query: 284 QSILGHFRLSTTQIYTNVNSKN 305
           Q +LGH ++ TT  Y  V+ +N
Sbjct: 299 QRLLGHQKIDTTMEYAMVDQQN 320


>gi|313621442|gb|EFR92351.1| Int [Listeria innocua FSL S4-378]
          Length = 92

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 4/75 (5%)

Query: 229 LFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           LF  + GKP+ P  ++QR+ R L R+  LP+    H LRH+ AT LL+ G D++ IQ  L
Sbjct: 4   LFDNMEGKPIRPDSIYQRWRRFLERH-NLPV-IRFHDLRHTSATLLLNKGRDIKIIQERL 61

Query: 288 GH-FRLSTTQIYTNV 301
            H   ++T+ IY +V
Sbjct: 62  RHKSSVTTSNIYAHV 76


>gi|296275196|ref|ZP_06857703.1| putative integrase [Staphylococcus aureus subsp. aureus MR1]
          Length = 403

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 84/208 (40%), Gaps = 32/208 (15%)

Query: 132 KQALTLVDNVLLHTSHETKWIDARN----SAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           K+ L   D ++ H  H T+    RN     A++      G+RI E L++   NI  +  T
Sbjct: 192 KELLQCFDYLIKHKRHATR---KRNYEMVKALVEFQINNGMRIGELLAIKTDNINIENKT 248

Query: 188 LRIQGKGDKI--------------------RIVPLLPS----VRKAILEYYDLCPFDLNL 223
           L I G  + +                    R + L       ++K +LE      ++   
Sbjct: 249 LEIDGTINWVTDAETGAFGVKETTKTSKSYRTIGLTTQSINLLKKLMLENKKENQWNAKF 308

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             +  +F    G P++       I++      +    T HTLRH+  + L   G +L++I
Sbjct: 309 IDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQLGINLKAI 368

Query: 284 QSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           Q  +GH    TT +IYT++  +   D M
Sbjct: 369 QDRVGHSDYKTTLEIYTHITDQMSKDMM 396


>gi|289664416|ref|ZP_06485997.1| putative integrase [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 314

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 70/157 (44%), Gaps = 41/157 (26%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV----------RKAI 210
           LL G G+R+ E L L  +++   +  + ++ GKG K R VPL P +          R  +
Sbjct: 141 LLCGSGMRLLECLRLRIKDMDMVRGEIVVRDGKGGKDRRVPL-PHILRGELMRQRERGLL 199

Query: 211 LEYYDLC--------PFDL-----NLNIQLP---LFRGIRGKPLNP------------GV 242
           L   DL         P  L     N +++     LF   R +P++P             V
Sbjct: 200 LHAADLAEGAGRVFLPHALARKYPNADVEPGWQYLFLAAR-RPVDPRSGRVGRHHLSEEV 258

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
            QR ++  RR  G+    T HTLRH+FATHLL  G D
Sbjct: 259 LQRAVQAARRQAGITKLATCHTLRHAFATHLLEAGHD 295


>gi|288561495|ref|YP_003428901.1| transposition regulatory protein TnpA [Bacillus pseudofirmus OF4]
 gi|288548127|gb|ADC52009.1| transposition regulatory protein TnpA [Bacillus pseudofirmus OF4]
          Length = 368

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 70/156 (44%), Gaps = 17/156 (10%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQ-------GKGDKIRIVPLLPSV 206
           R+  ++  LY  GLRI E LSL  ++ I D +   RI+         G K++       V
Sbjct: 181 RDKLLIQTLYETGLRIGELLSLFIEDFIFDHKGGHRIKLVDRGELENGAKLKTSEREIYV 240

Query: 207 RKAILEYYD------LCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLS 259
            +++++  D      +   D++ N      +G   G P+N        ++LR+   +   
Sbjct: 241 SQSLMDLLDDYLYEVIDDLDIDTNFVFVKLKGKNIGHPMNYQNVSALFKRLRK--KVKFK 298

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
              H LRH+ AT      GD++ +Q  +GH ++ TT
Sbjct: 299 VHPHLLRHTHATMYYRQTGDIKQVQERIGHSQIQTT 334


>gi|254881857|ref|ZP_05254567.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|254834650|gb|EET14959.1| integrase [Bacteroides sp. 4_3_47FAA]
          Length = 372

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 9/88 (10%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +F G + K L  G  +R++       G+    T H  RHSF +  +  G D+  IQ+ +G
Sbjct: 286 IFEGFKDKMLQ-GPLKRWLLAA----GITKKITFHCTRHSFGSLHVEMGTDMAVIQAYMG 340

Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           H  ++TTQIY    SK     M E+ D+
Sbjct: 341 HKNITTTQIY----SKMAAQQMCEVVDK 364


>gi|257900316|ref|ZP_05679969.1| phage integrase [Enterococcus faecium Com15]
 gi|257838228|gb|EEV63302.1| phage integrase [Enterococcus faecium Com15]
          Length = 361

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 77/161 (47%), Gaps = 8/161 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI  L+ G GLR+SE +++   ++  D++ + +  KG+K   V +     + +  Y 
Sbjct: 201 RDLAINALILGSGLRLSEVVNINLDDLSLDKNKVVVTRKGNKRDAVNIAAFAMEYLANYL 260

Query: 215 DLCP--FDLNLN---IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
            +    + +  N   + L +++G   K ++    +R + +  +  G  +  + H LRH+ 
Sbjct: 261 AIRKERYKVTENEKALFLAIYQG-EAKRISGIAIERMVAKYSK--GFRVQVSPHKLRHTL 317

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           AT L      L      LGH   +TT +YT++++    D +
Sbjct: 318 ATRLYQQTNSLVLTAQQLGHSSTNTTTLYTHIDNAATIDAL 358


>gi|254713770|ref|ZP_05175581.1| Phage integrase [Brucella ceti M644/93/1]
 gi|254717173|ref|ZP_05178984.1| Phage integrase [Brucella ceti M13/05/1]
 gi|261218989|ref|ZP_05933270.1| phage integrase [Brucella ceti M13/05/1]
 gi|261321511|ref|ZP_05960708.1| phage integrase [Brucella ceti M644/93/1]
 gi|260924078|gb|EEX90646.1| phage integrase [Brucella ceti M13/05/1]
 gi|261294201|gb|EEX97697.1| phage integrase [Brucella ceti M644/93/1]
          Length = 308

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 21/148 (14%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA--ILEYYDLCPF 219
            L   G R+ EA+ LT  +I + + T  +  K ++ R VPL    RKA  I       PF
Sbjct: 167 FLVDTGCRLGEAIGLTWNDIQEQRVTFWVT-KSNRSRTVPLTRRARKASHIPRERLKGPF 225

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHLLSNG 277
            +                LN   F++   + +  +GL        H LRH+ A+ L+  G
Sbjct: 226 SM----------------LNQVRFRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVRGG 269

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            D+R +Q  LGH  L  T  Y ++ + +
Sbjct: 270 IDIRRVQMWLGHQTLQMTMRYAHLATHD 297


>gi|239906586|ref|YP_002953327.1| putative molybdenum-pterin binding protein [Desulfovibrio
           magneticus RS-1]
 gi|239796452|dbj|BAH75441.1| putative molybdenum-pterin binding protein [Desulfovibrio
           magneticus RS-1]
          Length = 338

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 17/153 (11%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQG--KGDKIRIVPLLPSVRKAILEYYD 215
           +  +L   G ++ E L++  +  +D  + T+R     +G+  R V ++P       ++ D
Sbjct: 42  VYAMLRLSGAKLGEVLAVNERTDIDRTKCTVRFPANHEGEAARKV-VMPR------DFLD 94

Query: 216 LCPFDLNLNIQLPLFRGIRGK--PLNPGVFQRYIRQLRRYLGLPLSTTAHT-LRHSFATH 272
               D+      P+ R +RG+   L+PG  +R + +  +  GLP    + T LRHS A  
Sbjct: 95  ----DVERFASAPINRALRGELFRLDPGFVRRKLYEQAKRAGLPPGRVSPTALRHSRAVE 150

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           LL +G  L  +Q +LGH  +  T IY + +  +
Sbjct: 151 LLRSGVPLPVVQMMLGHSSVVLTSIYCSFSDAD 183


>gi|227519604|ref|ZP_03949653.1| integrase family protein [Enterococcus faecalis TX0104]
 gi|227072954|gb|EEI10917.1| integrase family protein [Enterococcus faecalis TX0104]
 gi|315168777|gb|EFU12794.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1341]
          Length = 376

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 22/174 (12%)

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ----STLRIQGKGDKIRIVPLLPSV 206
           +I+ +   + +LL   GLR+ EAL+L  +++ +D+     TL  +   + I     + S 
Sbjct: 192 FINYQYYVLTFLLARTGLRLGEALALKWEDVTEDKLTVSKTLYRENNQNFITTPKTISSY 251

Query: 207 RKAILEY---------------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           R  IL+                + L      LN +  +F   +G  L    ++ Y   + 
Sbjct: 252 RTIILDKKCIELLKSFKIKKIEHSLKSNAFILNKEF-VFTDSKGDFLKQCNYRTYFTTIC 310

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSK 304
               +P   + H LRHS A HLL +G +++ +   LGH  ++ T  +Y +V+ K
Sbjct: 311 TLADVP-KLSPHALRHSHAVHLLESGSNIKFVSERLGHHTINMTANVYLHVSKK 363


>gi|119357861|ref|YP_912505.1| phage integrase family protein [Chlorobium phaeobacteroides DSM
           266]
 gi|119355210|gb|ABL66081.1| phage integrase family protein [Chlorobium phaeobacteroides DSM
           266]
          Length = 419

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN-VNSK 304
           GLP     H  RH+FAT  L+ G DL ++  +LGH  + TTQIY   V+SK
Sbjct: 286 GLPFKLHFHVSRHTFATMNLTAGCDLYTVSKLLGHREIKTTQIYGRIVDSK 336


>gi|307592485|ref|YP_003900076.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306986130|gb|ADN18010.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 323

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 69/151 (45%), Gaps = 13/151 (8%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVR---KAI 210
           R+SA+L ++ G GLR  E ++L   +       L I+G KG K RIVPL    +   KA 
Sbjct: 160 RDSALLAIVIGAGLRRGEVVALRLGDFDLTSGDLHIRGAKGGKSRIVPLPQKCQLLVKAW 219

Query: 211 LEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           L    + P  L + I      L+R +  + +       YI Q R       S + H  R 
Sbjct: 220 LAVRSMSPGPLLMAISKGKELLWRSLSSQSV------LYILQKRAQQAEISSCSPHDCRR 273

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           ++ ++LL  G D+ ++  + GH    TT  Y
Sbjct: 274 TYISNLLEAGVDIVTVSQLAGHSSTLTTAKY 304


>gi|237815093|ref|ZP_04594091.1| Tyrosine recombinase xerC [Brucella abortus str. 2308 A]
 gi|237789930|gb|EEP64140.1| Tyrosine recombinase xerC [Brucella abortus str. 2308 A]
          Length = 313

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 21/148 (14%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA--ILEYYDLCPF 219
            L   G R+ EA+ LT  +I + + T  +  K ++ R VPL    RKA  I       PF
Sbjct: 172 FLVDTGCRLGEAIGLTWNDIQEQRVTFWVT-KSNRSRTVPLTRRARKASHIPRERLKGPF 230

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNG 277
            +                LN   F++   + +  +GL        H LRH+ A+ L+  G
Sbjct: 231 SM----------------LNQVRFRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVRGG 274

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            D+R +Q  LGH  L  T  Y ++ + +
Sbjct: 275 IDIRRVQMWLGHQTLQMTMRYAHLATHD 302


>gi|317505559|ref|ZP_07963471.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
 gi|315663323|gb|EFV03078.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
          Length = 308

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 74/163 (45%), Gaps = 28/163 (17%)

Query: 167 GLRISEALSLTPQNIM---DDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY------DL 216
           GL   +   L P++I+   D  + +RI+  K D   I+PLLP + K IL  Y      D 
Sbjct: 143 GLARVDMQRLKPKHIIHNADGTAEIRIKRQKTDVEAIIPLLP-IAKQILSLYVKDKKADE 201

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LS 275
             F  NL I+   F  +     N G   R  + L          T H  RH+F+T + LS
Sbjct: 202 LIFP-NLTIRKASFACV-----NIGQICRIEKGL----------TFHMARHTFSTTICLS 245

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           NG  + ++  +LGH  + TTQIY  +      + M  + D+ H
Sbjct: 246 NGISMETLSKMLGHSNIGTTQIYGKITDHKIQEDMTALTDREH 288


>gi|307565175|ref|ZP_07627678.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307346119|gb|EFN91453.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 247

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 69/160 (43%), Gaps = 34/160 (21%)

Query: 162 LLYGC--GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVRKAILEYYD 215
            ++ C  GL I++   LT  +I    D Q  +R + +  K+  IVPL P + K I+E   
Sbjct: 51  FIFSCFTGLAITDMEHLTFGHIKSAADGQMYIRKERQKTKVEFIVPLHP-IAKTIIE--- 106

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ---LRRYLGLPLSTTA---------- 262
                     Q    + ++ +  N  +  R+I Q    R  L   LS             
Sbjct: 107 ----------QQRQLKAVKEEGNNTDMDNRFIFQPYCSRSVLAAKLSIVGKACGIKQRLS 156

Query: 263 -HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            H  RH+F T  LS G  + SI  ++GH  +++TQIY  V
Sbjct: 157 YHMARHTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQV 196


>gi|255014969|ref|ZP_05287095.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 433

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 7/86 (8%)

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQ----LRRYLG--LPLSTTAHTLRHSFATHL-LS 275
           L+I L +    RG+     VF  Y R+    L R LG       T H  RH+F TH+ LS
Sbjct: 307 LDIPLQIIEKYRGQRSGDKVFNIYARRYFILLTRELGQVYGFDLTFHLARHNFGTHITLS 366

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNV 301
            G  + ++  ++GH  +STTQIY  V
Sbjct: 367 LGVPIETVSRMMGHTSISTTQIYAQV 392


>gi|225852160|ref|YP_002732393.1| tyrosine recombinase XerC [Brucella melitensis ATCC 23457]
 gi|256044336|ref|ZP_05447240.1| Tyrosine recombinase xerC [Brucella melitensis bv. 1 str. Rev.1]
 gi|256264329|ref|ZP_05466861.1| phage integrase [Brucella melitensis bv. 2 str. 63/9]
 gi|265990748|ref|ZP_06103305.1| phage integrase [Brucella melitensis bv. 1 str. Rev.1]
 gi|225640525|gb|ACO00439.1| Tyrosine recombinase xerC [Brucella melitensis ATCC 23457]
 gi|263001532|gb|EEZ14107.1| phage integrase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094603|gb|EEZ18401.1| phage integrase [Brucella melitensis bv. 2 str. 63/9]
 gi|326408660|gb|ADZ65725.1| tyrosine recombinase XerC [Brucella melitensis M28]
 gi|326538383|gb|ADZ86598.1| tyrosine recombinase xerC [Brucella melitensis M5-90]
          Length = 308

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 21/148 (14%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA--ILEYYDLCPF 219
            L   G R+ EA+ LT  +I + + T  +  K ++ R VPL    RKA  I       PF
Sbjct: 167 FLVDTGCRLGEAIGLTWNDIQEQRVTFWVT-KSNRSRTVPLTRRARKASHIPRERLKGPF 225

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNG 277
            +                LN   F++   + +  +GL        H LRH+ A+ L+  G
Sbjct: 226 SM----------------LNQVRFRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVRGG 269

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            D+R +Q  LGH  L  T  Y ++ + +
Sbjct: 270 IDIRRVQMWLGHQTLQMTMRYAHLATHD 297


>gi|167764527|ref|ZP_02436648.1| hypothetical protein BACSTE_02916 [Bacteroides stercoris ATCC
           43183]
 gi|167697196|gb|EDS13775.1| hypothetical protein BACSTE_02916 [Bacteroides stercoris ATCC
           43183]
          Length = 245

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 87/192 (45%), Gaps = 23/192 (11%)

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           N+++  ++ RAL+ K+ + L+ +  L    +   ++A     ++  Y  G+   + + L 
Sbjct: 30  NVRRQETVKRALS-KEEIALIASADLRRYPQ---LEAARDLFMFSFYCRGMSFVDVIRLK 85

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK- 236
              I+ D         G +++I  LLP++++ I +Y    P+         +F  I G+ 
Sbjct: 86  HDGIVRDTIFYTRSKTGQRLQI-GLLPAMKEIIEKYRTSGPY---------IFPYIHGQS 135

Query: 237 PLNP--------GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           P +         G   RY+++L   L + +  T +  RHS+AT   + G  +  I   LG
Sbjct: 136 PRDAYTQYRYSLGTVNRYLKRLGTLLNIGIPLTTYVARHSWATIAKNEGIPISLISEGLG 195

Query: 289 HFRLSTTQIYTN 300
           H    TTQIY N
Sbjct: 196 HTSEKTTQIYLN 207


>gi|332827396|gb|EGK00148.1| hypothetical protein HMPREF9455_03480 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 402

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%)

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           Y++++     +  + T    RHSFAT  +SNG  + ++  +LGH  + TTQIY  + S
Sbjct: 329 YLKEIADLCNIKKNVTFRVSRHSFATLAISNGVSIEAVSKMLGHTNVKTTQIYAQITS 386


>gi|298388185|ref|ZP_06997722.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14]
 gi|298259053|gb|EFI01940.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14]
          Length = 77

 Score = 46.6 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 31/50 (62%)

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R  G+      H LRHSFATHLL  G D++ ++ ++GH  + TT+ Y ++
Sbjct: 6   REAGITKRIYPHLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHI 55


>gi|282859589|ref|ZP_06268693.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282587640|gb|EFB92841.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 407

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           I+++ +  G+    + H  RHSFA   L+ G  + S+  ILGH  ++TTQIY  V S
Sbjct: 326 IKKVAKMCGIKKRISFHVSRHSFAVLALNYGMPIESVSKILGHTDIATTQIYAKVTS 382


>gi|260545644|ref|ZP_05821385.1| phage integrase [Brucella abortus NCTC 8038]
 gi|260754402|ref|ZP_05866750.1| phage integrase [Brucella abortus bv. 6 str. 870]
 gi|260757621|ref|ZP_05869969.1| phage integrase [Brucella abortus bv. 4 str. 292]
 gi|260761447|ref|ZP_05873790.1| phage integrase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883427|ref|ZP_05895041.1| phage integrase [Brucella abortus bv. 9 str. C68]
 gi|260097051|gb|EEW80926.1| phage integrase [Brucella abortus NCTC 8038]
 gi|260667939|gb|EEX54879.1| phage integrase [Brucella abortus bv. 4 str. 292]
 gi|260671879|gb|EEX58700.1| phage integrase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674510|gb|EEX61331.1| phage integrase [Brucella abortus bv. 6 str. 870]
 gi|260872955|gb|EEX80024.1| phage integrase [Brucella abortus bv. 9 str. C68]
          Length = 312

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 21/148 (14%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA--ILEYYDLCPF 219
            L   G R+ EA+ LT  +I + + T  +  K ++ R VPL    RKA  I       PF
Sbjct: 171 FLVDTGCRLGEAIGLTWNDIQEQRVTFWVT-KSNRSRTVPLTRRARKASHIPRERLKGPF 229

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNG 277
            +                LN   F++   + +  +GL        H LRH+ A+ L+  G
Sbjct: 230 SM----------------LNQVRFRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVRGG 273

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            D+R +Q  LGH  L  T  Y ++ + +
Sbjct: 274 IDIRRVQMWLGHQTLQMTMRYAHLATHD 301


>gi|330877642|gb|EGH11791.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 321

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 112/246 (45%), Gaps = 16/246 (6%)

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            + A ++  R       +    ++ I+  +    ++ + +   +L +R++K  +    A 
Sbjct: 71  HVTALVATLREDDYAPNTTSLYVNAIRGVMNEAWRQDLISHDQLLKIRSIKPVSGTRLAK 130

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
                 TL+  ++   + + +    R++AI+ +LYG G+R SE+++L    I   + +LR
Sbjct: 131 GRNIRRTLIRELMEACAADPRPQGRRDAAIIAILYGSGMRKSESVNLDLAQIDFAERSLR 190

Query: 190 IQGKGDKIRIVPLLPS-VRKAILEYYDL---CPFDLNLNIQLPLFRGI-RGKPLNPGVFQ 244
           + GKG+K +++   P    KA+ ++ +L   C         L LF  I RG  +      
Sbjct: 191 VMGKGNK-QLIKYAPEWAFKALNDWLELRRSC-LQPGQGDDLFLFNRIRRGSHITRDRIT 248

Query: 245 RY-----IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           ++      +Q  R +G+ +    H  R SF T ++    DL   Q +  H  +STT  Y 
Sbjct: 249 KHAIYFIAKQRGRQVGVDI--MPHDFRRSFITRVIEE-FDLSIAQKLAHHTHISTTASY- 304

Query: 300 NVNSKN 305
           ++ S+N
Sbjct: 305 DMRSEN 310


>gi|315125783|ref|YP_004067786.1| hypothetical protein PSM_A0685 [Pseudoalteromonas sp. SM9913]
 gi|315014297|gb|ADT67635.1| hypothetical protein PSM_A0685 [Pseudoalteromonas sp. SM9913]
          Length = 380

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 118/291 (40%), Gaps = 45/291 (15%)

Query: 51  AFYTE----EKITIQTIRQLSYTEIRAFISK--RRTQKIGDRSLKRSLSGIKSFLKYLKK 104
           +FY E      ++I+ I +L+  E+  ++    +R +K+   S++  ++ +K F KYL +
Sbjct: 57  SFYKEIISKTNLSIENIERLTDQEMSGYLVGVLQRQRKLKHSSIENHIAVLKEFFKYLYQ 116

Query: 105 RKITTESNILNM--RNLKKSNS--------LPRALNEKQALTLVDNVLLHTSHETKWIDA 154
              TT+  + +    N +   S        +  A   K+     + +L +   ++ +I  
Sbjct: 117 SGFTTKEMLFSYAYENNEYEQSFLSGVKTDMHEAYFHKKKFQ--ECLLCYVDSQSSFIKK 174

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI-------------MDDQSTLRIQGKGDKIRIVP 201
           RN  +L L Y  G R  E +     NI             +     + I GKG+ IR  P
Sbjct: 175 RNELVLQLGYYAGFRAFEVVLAENLNIETFRQLLPKVDFFIPKAIHINIYGKGNSIRTTP 234

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRG--IRGKPLNPGVFQRYIRQLRRYLGLPLS 259
             PS+ K+I E+       +N    +    G  ++ K     +F++   +      L L 
Sbjct: 235 FEPSLVKSIYEFIWGEAKHINSGNMICQENGKLLKDKTFASKLFRKCADKYCENTSLTLE 294

Query: 260 TTA-------HTLRHSFATHLLS----NGGD-LRSIQSILGHFRLSTTQIY 298
                     H LR  FAT+ ++    NG D    +   LGH R STT  Y
Sbjct: 295 EAQLWKHRGFHKLRKCFATNSVTACRDNGDDPWIYVPQWLGHKRKSTTFGY 345


>gi|313895192|ref|ZP_07828749.1| phage integrase, N-terminal SAM domain protein [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312976087|gb|EFR41545.1| phage integrase, N-terminal SAM domain protein [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 352

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 106/249 (42%), Gaps = 25/249 (10%)

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSLPR 127
           +IR ++ + R       +L    + I++F K  ++     E+    L +RN       P+
Sbjct: 98  QIRVYMEEMRRSNYSAATLMIKGAAIRAFYKVAQRLSFIAENPCAELQLRN-------PQ 150

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMD 183
            L+E      VD +    ++  +  DA    RN  I+YL+   GLR+ E + L+ ++I  
Sbjct: 151 HLDEDYKYLTVDQIGEICAYLKEDKDALKRLRNLLIVYLMGVEGLRVVEVMRLSDEDIDW 210

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVR--KAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLN 239
            +  + I+GKG    I P   ++   KA LE     P +  L   I        +G+   
Sbjct: 211 QRGRIEIRGKGHAGLIYPCEETLELLKAYLEERGAVPQENRLTPTIISCSSNNAQGRISR 270

Query: 240 PGVFQRYIRQLRRYL---GLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            G+  RY+  + R L   GL     A H  RHS  T+L     DLR +Q  L       T
Sbjct: 271 VGI--RYV--INRALTAAGLKQPGYACHLFRHSCGTNLYQETKDLRVVQETLRQRSPKVT 326

Query: 296 QIYTNVNSK 304
             Y +V+ +
Sbjct: 327 AKYAHVHDR 335


>gi|307708158|ref|ZP_07644625.1| integrase/recombinase, phage integrase family [Streptococcus mitis
           NCTC 12261]
 gi|307615604|gb|EFN94810.1| integrase/recombinase, phage integrase family [Streptococcus mitis
           NCTC 12261]
          Length = 271

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 21/173 (12%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQG----------KGDKIRIV 200
           I  ++  + YL +  G R SE  +L  ++I   +S ++ IQ           KG+K  I 
Sbjct: 83  ITLKDYVLFYLTFFLGDRKSETYALQWKHIDFSKSQIQLIQALDRYGEVKSTKGNKKTIF 142

Query: 201 PLLPSVRKAILEY-----YDLCPFDLNLNIQLPLF-----RGIRGKPLNPGVFQRYIRQL 250
            +   + + +  +     Y+L  F +  N +  +F     RG   KPL+       ++ +
Sbjct: 143 SISNDLLQLLTSWKEQQKYELAKFGIISNPEQFVFTYIDTRGNINKPLHADYLNNKMKSI 202

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           R+        T H LRH+ AT     G  L +I   L H    TTQIY N ++
Sbjct: 203 RKRHKELAHATPHKLRHTGATLAKQAGMSLEAISEALTHSDTGTTQIYVNTSN 255


>gi|307566138|ref|ZP_07628595.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345150|gb|EFN90530.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 324

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 24/155 (15%)

Query: 162 LLYGC--GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVR-------- 207
            ++ C  GL IS+  +L  ++I    D Q  +R + +  K+  IVPL P  +        
Sbjct: 147 FIFSCFTGLAISDMENLKYKHIQTAADGQMYIRKERQKTKMEFIVPLHPIAKTIIEQQRQ 206

Query: 208 -KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            KA+ E  +    D  L  Q    R +    L+          + R  G+    + H  R
Sbjct: 207 LKAVKEEGNNTDMDNRLIFQPCCSRSVLAAKLSI---------VGRACGIKQRLSYHMGR 257

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H+F T  LS G  + SI  ++GH  +++TQIY  V
Sbjct: 258 HTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQV 292


>gi|257889173|ref|ZP_05668826.1| phage integrase [Enterococcus faecium 1,141,733]
 gi|293552958|ref|ZP_06673611.1| integrase [Enterococcus faecium E1039]
 gi|293569758|ref|ZP_06680846.1| integrase [Enterococcus faecium E1071]
 gi|257825245|gb|EEV52159.1| phage integrase [Enterococcus faecium 1,141,733]
 gi|291587716|gb|EFF19592.1| integrase [Enterococcus faecium E1071]
 gi|291602888|gb|EFF33087.1| integrase [Enterococcus faecium E1039]
          Length = 361

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 77/161 (47%), Gaps = 8/161 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI  L+ G GLR+SE +++   ++  D++ + +  KG+K   V +     + +  Y 
Sbjct: 201 RDLAINALILGSGLRLSEVVNINLDDLSLDKNNVVVTRKGNKRDAVNIAAFAMEYLANYL 260

Query: 215 DLCP--FDLNLN---IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
            +    + +  N   + L +++G   K ++    +R + +  +  G  +  + H LRH+ 
Sbjct: 261 AIRKERYKVTENEKALFLAIYQG-EAKRISGIAIERMVAKYSK--GFRVQVSPHKLRHTL 317

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           AT L      L      LGH   +TT +YT++++    D +
Sbjct: 318 ATRLYQQTNSLVLTAQQLGHSSTNTTTLYTHIDNAATIDAL 358


>gi|227537901|ref|ZP_03967950.1| integrase [Sphingobacterium spiritivorum ATCC 33300]
 gi|325953712|ref|YP_004237372.1| integrase [Weeksella virosa DSM 16922]
 gi|227242286|gb|EEI92301.1| integrase [Sphingobacterium spiritivorum ATCC 33300]
 gi|323436330|gb|ADX66794.1| integrase family protein [Weeksella virosa DSM 16922]
          Length = 416

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGD 308
            T H  RH+FAT  LS G  L S+  +LGH  ++TTQIY  + N K G D
Sbjct: 348 VTFHLARHTFATLFLSEGVPLESLSKMLGHKNIATTQIYAKILNEKVGKD 397


>gi|284045888|ref|YP_003396228.1| integrase [Conexibacter woesei DSM 14684]
 gi|283950109|gb|ADB52853.1| integrase domain protein SAM domain protein [Conexibacter woesei
           DSM 14684]
          Length = 180

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 5/117 (4%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E  ++L+  EIER L+ LT ++Y  D R    FL       I +  +  +    +R F++
Sbjct: 4   EVADFLRYCEIERRLAPLTCKAYARDVRACTTFL-----HSIDVHDLAAVRVAHLRRFLA 58

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
                +    S  R+++ ++ F ++  +           +R  KK ++LP  L+ ++
Sbjct: 59  AEADHRPAPASQARTIAALRCFFRFCVENDYLDRDPAAVLRAPKKRDALPDVLDSRE 115


>gi|289810498|ref|ZP_06541127.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 275

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 28/186 (15%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--------TKWIDARNSAILYLLYGCGLRISEALS 175
           S P  L   +  T+ +  +   +HE         K  D   + ++ +    G R  EA++
Sbjct: 79  SYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICLSTGARWREAVN 138

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           LT   +   + T  ++ KG K R +P+   + + I+    L  F+               
Sbjct: 139 LTRSQVTKYRITF-VRTKGKKNRSIPISKELYEEIMA---LDGFNF-------------- 180

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  FQ      +  + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T
Sbjct: 181 --FTDCYFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMT 238

Query: 296 QIYTNV 301
             Y ++
Sbjct: 239 MRYAHL 244


>gi|55822960|ref|YP_141401.1| site-specific tyrosine recombinase XerS [Streptococcus thermophilus
           CNRZ1066]
 gi|81559404|sp|Q5LZT9|XERS_STRT1 RecName: Full=Tyrosine recombinase xerS
 gi|55738945|gb|AAV62586.1| integrase/recombinase, tyrosine family [Streptococcus thermophilus
           CNRZ1066]
          Length = 356

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 116/284 (40%), Gaps = 45/284 (15%)

Query: 58  ITIQTIRQLSYTEIRAFI----------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI 107
           I I+T+  L+  ++ +F+          +  + Q +   ++ R+LS + S  KYL +   
Sbjct: 66  IHIKTLENLTKKDMESFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVE 125

Query: 108 TTESNILNMRNLKKSNSL--------PRALNEKQALTLVDNVL-----LHTSHETKWID- 153
             +      RN+ K  S          RA N KQ L L D  +     +   +E K  + 
Sbjct: 126 GPDGEPYFYRNVMKKISTKKKKETLAARAENIKQKLFLGDETMKFLDYVENEYEVKLSNR 185

Query: 154 ---------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
                     R+ AI+ LL   G+R+SEA++L  ++I   +  + +  KG +   V +  
Sbjct: 186 AKSSFYKNKERDLAIIALLLSSGVRLSEAVNLDLKDINLKRMVIDVTRKGGQRDSVNMAS 245

Query: 205 SVRKAILEY-------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
             R  +  Y       Y     D+ L   L  +RG+  + ++    ++ + +  +     
Sbjct: 246 FARPYLENYLSIRNKRYKAEKQDVALF--LTEYRGVPNR-IDASSIEKMVAKYSQ--DFK 300

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T H LRH+ AT L         +   LGH     T +YT++
Sbjct: 301 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHI 344


>gi|257871185|ref|ZP_05650838.1| site-specific recombinase [Enterococcus gallinarum EG2]
 gi|257805349|gb|EEV34171.1| site-specific recombinase [Enterococcus gallinarum EG2]
          Length = 379

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 3/74 (4%)

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
           +G   +PL+P      +  L +   LP   T H LRH+F + LL+NG D   ++S++GH 
Sbjct: 288 KGELNQPLHPDYLNNKLDALSKKFDLP-KITPHGLRHTFVSDLLNNGVDDLIVKSLVGHA 346

Query: 291 RLS--TTQIYTNVN 302
             S  T  +Y +VN
Sbjct: 347 ETSEITRNVYGHVN 360


>gi|257784371|ref|YP_003179588.1| integrase family protein [Atopobium parvulum DSM 20469]
 gi|257472878|gb|ACV50997.1| integrase family protein [Atopobium parvulum DSM 20469]
          Length = 391

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G  + P    R   ++RR L LP   T H+LRH+ A+  L++G DL+++   LGH   +T
Sbjct: 300 GSYMRPTSVSRSFTRMRRTLQLPQGITFHSLRHTHASWCLASGVDLKTLSERLGHADPAT 359

Query: 295 T-QIYTNV 301
           T +IY+++
Sbjct: 360 TLRIYSHL 367


>gi|301300027|ref|ZP_07206252.1| site-specific recombinase, phage integrase family [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300852418|gb|EFK80077.1| site-specific recombinase, phage integrase family [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 308

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 16/163 (9%)

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-KIRIVP 201
           L+ S E  W        +YL+   GLR +EAL+LTP +   +   + I    + K +   
Sbjct: 128 LNLSSEVNW-----DWFIYLISKTGLRFAEALALTPADFDYENQQININKSWNYKFKDYG 182

Query: 202 LLP-----SVRKAILEYYDLCPFDLNL---NIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
             P     S RK  ++   L  F   +   +   P+F     K  N  V  R +  L R+
Sbjct: 183 FQPTKNKSSNRKIFVDDSTLKAFKKLIKEKDPDQPIFVNQDQKIFNSTVNSR-LATLCRH 241

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
             +P + + H LRH+ A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 242 ANIP-TISIHGLRHTHASLLLFQGVSVLSVSRRLGHANVTTTQ 283


>gi|227550064|ref|ZP_03980113.1| tyrosine recombinase [Enterococcus faecium TX1330]
 gi|257885868|ref|ZP_05665521.1| phage integrase [Enterococcus faecium 1,231,501]
 gi|257897435|ref|ZP_05677088.1| phage integrase [Enterococcus faecium Com12]
 gi|227180803|gb|EEI61775.1| tyrosine recombinase [Enterococcus faecium TX1330]
 gi|257821724|gb|EEV48854.1| phage integrase [Enterococcus faecium 1,231,501]
 gi|257834000|gb|EEV60421.1| phage integrase [Enterococcus faecium Com12]
          Length = 364

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 77/161 (47%), Gaps = 8/161 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI  L+ G GLR+SE +++   ++  D++ + +  KG+K   V +     + +  Y 
Sbjct: 204 RDLAINALILGSGLRLSEVVNINLDDLSLDKNNVVVTRKGNKRDAVNIAAFAMEYLANYL 263

Query: 215 DLCP--FDLNLN---IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
            +    + +  N   + L +++G   K ++    +R + +  +  G  +  + H LRH+ 
Sbjct: 264 AIRKERYKVTENEKALFLAIYQG-EAKRISGIAIERMVAKYSK--GFRVQVSPHKLRHTL 320

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           AT L      L      LGH   +TT +YT++++    D +
Sbjct: 321 ATRLYQQTNSLVLTAQQLGHSSTNTTTLYTHIDNAATIDAL 361


>gi|295700667|ref|YP_003608560.1| integrase family protein [Burkholderia sp. CCGE1002]
 gi|295439880|gb|ADG19049.1| integrase family protein [Burkholderia sp. CCGE1002]
          Length = 360

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 125/307 (40%), Gaps = 45/307 (14%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSF 98
           Y+    QFL +L    +   T+ T    +  E  A +  RRTQ++      R L  I+  
Sbjct: 52  YQAQWGQFLDWLGARQQSLATVDTP---AIAEFVASLEIRRTQRV------RYLRLIERV 102

Query: 99  LKYLKKRKITT-----------ESNILNMRNLKKSNSLPRALNEKQAL-TLVDNVLLHTS 146
           L ++++ +  +           E+   N R+ + +  L  A  E+ AL   +   L   S
Sbjct: 103 LDHVREIESASTNPARFIAQDGEAAWRNARDNEPTGFLTHA--ERTALIARLFAPLPALS 160

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD----KIRIVPL 202
              +W + R+ A++ +  G GL+  EA +LT   + +    + I+        + R+ P 
Sbjct: 161 TAQRWRERRDRALIAVFLGGGLKTGEAGALTVSCVREGSPWVTIESPNPMLTRRTRLAPF 220

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS--- 259
             ++  A L    L   +L  N+  P      G+P++     R +  L    G+  S   
Sbjct: 221 ATAILDAWLAERRLT--ELAGNLVFPA--SPSGRPMHKATMLRAVDALVDAAGIAASRQS 276

Query: 260 -TTAHTLRHSFATHLLSNGGDLRSIQSILGHFR-LSTTQIYTNVNSKNGGDWMMEIYDQT 317
             +  TLR++FA  L  +G +   +   LG  + +S  ++Y          W   I DQ 
Sbjct: 277 RASPQTLRNTFAADLFESGVEAEQVGQWLGFVQAVSANRLYRA--------WQTWI-DQQ 327

Query: 318 HPSITQK 324
            P  T++
Sbjct: 328 DPRATEE 334


>gi|120435584|ref|YP_861270.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|120435708|ref|YP_861394.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|117577734|emb|CAL66203.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|117577858|emb|CAL66327.1| phage integrase family protein [Gramella forsetii KT0803]
          Length = 425

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 95/227 (41%), Gaps = 13/227 (5%)

Query: 94  GIKSFLKYLKKRK---ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            ++SF+KY  ++K   I   S I   R + +   LP   ++++   L+ +V       + 
Sbjct: 188 ALRSFMKYAYQQKLLAIDYSSKIPRYRAVDQPK-LPSTYSKEEIEKLIVSV-----DRSN 241

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKA 209
               RN AI+      GLR S+   L    +  D ST+ I Q K  K  ++P+LP V  A
Sbjct: 242 PQGKRNYAIILFAARLGLRASDISRLKFTELHWDTSTIEIKQVKTGKELVLPILPDVGNA 301

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST---TAHTLR 266
           +++Y               + +    +     V    +++  R  G+ +       H+LR
Sbjct: 302 LIDYLKYGRPKSESPFVFLIAKAPYAQFHTSQVVTHVVQRAYRKAGIDIKGRKFGPHSLR 361

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           HS    +L     L  I  + GH    +T+ Y  ++ K+    M+++
Sbjct: 362 HSLGFRMLEESTALPIISEVFGHKSTESTRYYLRIDLKSMRQCMLDV 408


>gi|86139826|ref|ZP_01058392.1| Phage integrase [Roseobacter sp. MED193]
 gi|85823455|gb|EAQ43664.1| Phage integrase [Roseobacter sp. MED193]
          Length = 419

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 3/66 (4%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G+P+     +R+ R ++R   +P     H LRH+FA+ L+S G  L  +  +LGH ++ST
Sbjct: 323 GQPVKE--IRRFWRNMQREAEIP-DVRIHDLRHTFASLLVSGGASLEMVGRLLGHSQMST 379

Query: 295 TQIYTN 300
           TQ Y +
Sbjct: 380 TQRYAH 385


>gi|304320802|ref|YP_003854445.1| phage integrase family protein [Parvularcula bermudensis HTCC2503]
 gi|303299704|gb|ADM09303.1| phage integrase family protein [Parvularcula bermudensis HTCC2503]
          Length = 208

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 222 NLNIQLPLF--RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-HTLRHSFATHLLSNGG 278
           NL  Q  LF  R   G  L    + R +++  + +GLP S  A H+LR + AT L    G
Sbjct: 112 NLGTQDWLFPSRKTVGTHLTTRQYARLVQEWTQAIGLPSSAYATHSLRRTKATLLYRKTG 171

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +LR+IQ +LGH ++ +T  Y  V  ++ 
Sbjct: 172 NLRAIQLLLGHAKIDSTVRYLGVEVEDA 199


>gi|288801542|ref|ZP_06406990.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331523|gb|EFC70013.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 387

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYT 299
             +Q Y++ LR  +G+    T HT RH+FAT + L  G  + ++  +LGH  +S T+ Y 
Sbjct: 320 ATYQSYLKALRLRIGIAFPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYA 379

Query: 300 NVN 302
            V 
Sbjct: 380 KVT 382


>gi|228918725|ref|ZP_04082145.1| Phage integrase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228840942|gb|EEM86164.1| Phage integrase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 347

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 125/294 (42%), Gaps = 55/294 (18%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T + Y  D   FL ++      K +I TI++LS+ E+  +  +  ++K    +L+R 
Sbjct: 62  SERTKKLYLHDLSHFLRYI------KESIGTIKELSHNEMEIYFYQL-SKKYAATTLRRK 114

Query: 92  LSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
            + ++ FLKY+      ++  S  L   ++KK   + R L  ++   ++D +        
Sbjct: 115 KTVVQQFLKYVYDNNGLSDNFSTRLKKVSVKKEELVNRDLFPEEVTQILDEL-------- 166

Query: 150 KWIDARNSAILYLLYGC----GLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVP 201
                +++  +Y  +      GLRI E  +    +++   S     LR+ GKG+KIR V 
Sbjct: 167 ----KKSNYFVYTTFFLLTTTGLRIEEIATAKWADLVFHSSLNAYLLRVVGKGNKIREVR 222

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQ-----LPLFRG--IRGKPLNPGV----------FQ 244
           +      A+     L      L+       LP   G   R   L+  V          F 
Sbjct: 223 IFEDTLDALCHVRRLRKQTTELDASSTSAFLPRADGSNYRADYLSSLVAKKIEETNLAFL 282

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           RY RQ R         T HT RH  A +L+  G +L+ I+  LGH  + TT+ Y
Sbjct: 283 RY-RQDR--------ITPHTCRHFMANYLMEKGVELKKIRDYLGHESIMTTERY 327


>gi|154504412|ref|ZP_02041150.1| hypothetical protein RUMGNA_01916 [Ruminococcus gnavus ATCC 29149]
 gi|153795341|gb|EDN77761.1| hypothetical protein RUMGNA_01916 [Ruminococcus gnavus ATCC 29149]
          Length = 237

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 66/147 (44%), Gaps = 8/147 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI+ LL G G+R+SE + L  Q++    + + +  KG    ++     V  A+ +Y 
Sbjct: 71  RDLAIITLLLGTGIRVSECVGLDIQDVDFKNNGITVVRKGGNEMVIYFGEEVEHALKQYL 130

Query: 215 -----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
                   P   + N    LF   + + +     +  +++  R +      T H LR ++
Sbjct: 131 YTTREAATPLPGHEN---ALFLSTQRRRMGVQAVENMVKKYARQVTPNKKITPHKLRSTY 187

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            T L    GD+  +  +LGH  ++TT+
Sbjct: 188 GTTLYKETGDIYLVADVLGHKDVNTTK 214


>gi|284040174|ref|YP_003390104.1| integrase family protein [Spirosoma linguale DSM 74]
 gi|283819467|gb|ADB41305.1| integrase family protein [Spirosoma linguale DSM 74]
          Length = 378

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 22/140 (15%)

Query: 167 GLRISEALSLTPQNIMDD--QSTLR-IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
           GLR S+   LT   + +D   S +R +Q K + +  +PL  + R  + E  +        
Sbjct: 236 GLRYSDVAKLTWSEVYEDVNGSYIRFMQQKTEGVETLPLNETARILLAERSE-------- 287

Query: 224 NIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
            +  P  L+   + + L+    +          G+    T H  RH+FAT  L  G DL 
Sbjct: 288 GVVFPELLYSSWQNQKLSEWAHRS---------GIKRRITFHAFRHTFATLQLMEGTDLY 338

Query: 282 SIQSILGHFRLSTTQIYTNV 301
           +I  +LGH  ++TTQIY  +
Sbjct: 339 TISKLLGHRNITTTQIYAKI 358


>gi|221632161|ref|YP_002521382.1| transposase [Thermomicrobium roseum DSM 5159]
 gi|221156797|gb|ACM05924.1| transposase [Thermomicrobium roseum DSM 5159]
          Length = 316

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 4/76 (5%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +F  +RG PL+P    R   +L    GLP     H LRH+ A+ LL++G   + + SILG
Sbjct: 211 VFTSVRGVPLDPAETTRRFHRLLERAGLP-HRRFHDLRHTTASLLLADGVHPKVVASILG 269

Query: 289 HFRLSTTQIYTNVNSK 304
           H   ST Q+  +V S+
Sbjct: 270 H---STVQVTLDVYSR 282


>gi|148982562|ref|ZP_01816804.1| Hypothetical bacteriophage integrase [Vibrionales bacterium SWAT-3]
 gi|145960413|gb|EDK25803.1| Hypothetical bacteriophage integrase [Vibrionales bacterium SWAT-3]
          Length = 138

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             LP     H LRH+FA+H + NGG++ +++ ILGH  ++ T  Y ++
Sbjct: 57  FNLPKGQKVHVLRHTFASHFIMNGGNILTLKEILGHASITQTMAYAHL 104


>gi|281423083|ref|ZP_06253996.1| integrase [Prevotella oris F0302]
 gi|281402796|gb|EFB33627.1| integrase [Prevotella oris F0302]
          Length = 409

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 26/193 (13%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLT 177
           K+    P+AL+ +    + D V+    H +    AR+      L+ C  G   ++A+S+T
Sbjct: 217 KQEEKTPKALSRESFEKIRDLVI--PEHRSSHTLARD----LFLFACYTGTAYADAVSVT 270

Query: 178 PQNIMDDQST---LRIQGKGDKIR-IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
             N+  D++    L+ + K +++R  V LLP    A++E Y     D +     P+    
Sbjct: 271 RDNLFTDENGGLWLKYRRKKNELRACVKLLPEAL-ALIEKYR----DDDRQTLFPM---- 321

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRL 292
               L+    +R ++ L     +    T H  RHSFA+ + L  G  + +I  +LGH  L
Sbjct: 322 ----LHYPNMRRLMKCLAILADIKEDLTYHAGRHSFASLITLEAGVPIETICKMLGHSNL 377

Query: 293 STTQIYTNVNSKN 305
            TTQ+Y  V  K 
Sbjct: 378 QTTQVYAKVTPKK 390


>gi|300769888|ref|ZP_07079768.1| integrase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300763339|gb|EFK60155.1| integrase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 414

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 10/103 (9%)

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +PLLP   + I +Y D  P   N    LP+   +  + +N      Y++++    G+   
Sbjct: 293 IPLLPIALEIIRKYED-HPQCSNEGTLLPI---LSNQKMNA-----YLKEIADICGIRKE 343

Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T H  RH+FAT + LSNG  + S+  +LGH  L TTQ Y  +
Sbjct: 344 LTFHIARHTFATTITLSNGVPIESVSKMLGHKNLRTTQHYAKI 386


>gi|225627141|ref|ZP_03785179.1| Tyrosine recombinase xerC [Brucella ceti str. Cudo]
 gi|225617976|gb|EEH15020.1| Tyrosine recombinase xerC [Brucella ceti str. Cudo]
          Length = 313

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 21/148 (14%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA--ILEYYDLCPF 219
            L   G R+ EA+ LT  +I + + T  +  K ++ R VPL    RKA  I       PF
Sbjct: 172 FLVDTGCRLGEAIGLTWNDIQEQRVTFWVT-KSNRSRTVPLTRRARKASHIPRERLKGPF 230

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHLLSNG 277
            +                LN   F++   + +  +GL        H LRH+ A+ L+  G
Sbjct: 231 SM----------------LNQVRFRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVRGG 274

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            D+R +Q  LGH  L  T  Y ++ + +
Sbjct: 275 IDIRRVQMWLGHQTLQMTMRYAHLATHD 302


>gi|296393161|ref|YP_003658045.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296180308|gb|ADG97214.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 329

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 96/217 (44%), Gaps = 36/217 (16%)

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           ++++ K+L+ +   ++  ++ +  ++     PR ++      L+ +  +  +   +    
Sbjct: 120 LRAWFKWLQFQDHRSDDPMVKIAAVRHPERDPRPVSSDGLARLLADCRMQPTTRAR---- 175

Query: 155 RNSAILYLLYGCG-LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
                  LL  C  LR++E   +  ++I+D +  L + GKG++ + +PL P +       
Sbjct: 176 ------VLLAACQELRVAEIAKIRGEDIVDSR-FLVVNGKGNRTKTLPLHPLI------- 221

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPG-VFQRYIRQ-----LRRYLGLPLSTTAHTLRH 267
                    L  ++P  +G    P N G V  + + Q     +RR     +  T H+LRH
Sbjct: 222 -------AELAKKMPA-QGFWFPPPNGGHVDSKSVSQVISLAMRR---AKVKGTPHSLRH 270

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            + T L   G DL  +Q ++ H   +TT+ YT +  K
Sbjct: 271 WYGTELSDRGADLAVVQDLMRHKSPNTTRGYTLIADK 307


>gi|238762053|ref|ZP_04623026.1| Integrase [Yersinia kristensenii ATCC 33638]
 gi|238699781|gb|EEP92525.1| Integrase [Yersinia kristensenii ATCC 33638]
          Length = 349

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 27/167 (16%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           ++ +    G R +EA  LT   +  ++ T  I+ KG K R VP+   +   ++       
Sbjct: 197 VVKVCLSTGARWNEAEKLTRSQVSPNKITF-IRTKGKKNRSVPISKELHDELV------- 248

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNG 277
                         + G  L    + R++  +    + LP     H LRH+FA H + +G
Sbjct: 249 -------------ALEGDRLFSECYFRFMAAINTTDIKLPAGQLTHVLRHTFAAHFMMSG 295

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           G++  +Q ILGH  +  T  Y +   ++     +E   Q +P  T K
Sbjct: 296 GNILVLQRILGHSDIQMTMRYAHFAPEH-----LETAVQFNPLTTMK 337


>gi|89894954|ref|YP_518441.1| hypothetical protein DSY2208 [Desulfitobacterium hafniense Y51]
 gi|89334402|dbj|BAE83997.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 466

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 3/69 (4%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLS 293
           G  +NP  F R    L     LP   + H LRHS +T LL +G  DL+ IQ +LGH  +S
Sbjct: 322 GSYINPSTFTRRHYDLTAKAKLP-RISVHALRHSISTALLESGKVDLKQIQEMLGHKDIS 380

Query: 294 TT-QIYTNV 301
           TT   YT+V
Sbjct: 381 TTGNYYTDV 389


>gi|328947971|ref|YP_004365308.1| integrase family protein [Treponema succinifaciens DSM 2489]
 gi|328448295|gb|AEB14011.1| integrase family protein [Treponema succinifaciens DSM 2489]
          Length = 332

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 106/262 (40%), Gaps = 55/262 (20%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRS------LKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
           Q+   ++R ++S    QKI + S      ++R LS   +F  +L+      +S +  +  
Sbjct: 93  QIETEDLRKYLSDY--QKINNASRMTIDNVRRILS---TFFTWLEDENYILKSPVRRIHK 147

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           +K +  +    +++  + L DN              R+ AI+ +L   G+R+SE ++L  
Sbjct: 148 IKTAKLIKETYSDETLVLLRDNCKT----------TRDLAIIDMLASTGMRVSELVTLNK 197

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           Q++        + GKG K R V                  FD    I L  +   R K  
Sbjct: 198 QDVDFVNRECVVFGKGSKERPV-----------------YFDARTKIHLLNYLNER-KDN 239

Query: 239 NPGVF---------------QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
           NP +F               +  +R+L R L +      H  R + AT  +  G  +  +
Sbjct: 240 NPALFVSLLEPHNRLQISGVEITLRKLGRSLNIQ-KVHPHKFRRTLATQAIDKGMPIEQV 298

Query: 284 QSILGHFRLSTTQIYTNVNSKN 305
           Q +LGH ++ TT  Y  V+ +N
Sbjct: 299 QRLLGHQKIDTTMEYAMVDQQN 320


>gi|303236450|ref|ZP_07323037.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483301|gb|EFL46309.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 404

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYT 299
             +Q Y++ LR   G+    T HT RH+FAT + L  G  + ++  +LGH  +S T+ Y 
Sbjct: 320 ATYQSYLKALRLRAGISFPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTECYA 379

Query: 300 NVN 302
            V 
Sbjct: 380 KVT 382


>gi|237722351|ref|ZP_04552832.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|293371996|ref|ZP_06618395.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|229448161|gb|EEO53952.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|292633007|gb|EFF51589.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 405

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 26/163 (15%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI-----VPLLPSVRKAILEYY 214
            L+GC  GL   +  +LTP++   D +T RI  K  +++      +PLLP + K IL+ Y
Sbjct: 252 FLFGCFTGLSYIDIKTLTPEHFEKD-NTGRIWIKKRRVKTGVLSRIPLLP-IAKLILDKY 309

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                            G +  P+ +P    +Y++ +    G+      HT RH+FA+ +
Sbjct: 310 K---------------GGEKLLPIQDPADINKYLKDIAILCGINKRICFHTSRHTFASTI 354

Query: 274 -LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            L+N   L  +  +LGH     T  Y  +  K  G+ M ++ D
Sbjct: 355 TLANNISLEVVSKMLGHTNTRMTAHYAKLIDKCIGEQMDKLMD 397


>gi|119715826|ref|YP_922791.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119536487|gb|ABL81104.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 198

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQ-LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           LF  + G P++   F+  + Q   +  G+  +   H LRH+ A+ LL+ G DL+++   L
Sbjct: 103 LFATLAGTPISRNTFRTRVWQPAVKASGVSFNVRMHDLRHAHASWLLAGGADLKTVMDRL 162

Query: 288 GHFRLSTTQIY 298
           GH ++ TTQ Y
Sbjct: 163 GHAQIQTTQKY 173


>gi|315123568|ref|YP_004065574.1| putative site-specific tyrosine integrase/recombinase; may be used
           for the termination of replication of chromosome 2
           [Pseudoalteromonas sp. SM9913]
 gi|315017328|gb|ADT70665.1| putative site-specific tyrosine integrase/recombinase; may be used
           for the termination of replication of chromosome 2
           [Pseudoalteromonas sp. SM9913]
          Length = 403

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 79/183 (43%), Gaps = 40/183 (21%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQ--NIM-------DDQSTLRIQGKGDKIRIVPLLPS 205
           RN   L  L G  LRISE LS  PQ   +M       D    LRI GKG+K+R V L   
Sbjct: 219 RNLFTLACLKGLYLRISE-LSERPQWSPVMSHFWQDNDGFWFLRIMGKGNKLRDVTLSDD 277

Query: 206 VRKAILEY--YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL----- 258
             + +  Y  Y   P    ++   PL   IRG+    G+    +RQ+RR +         
Sbjct: 278 FLEYLKRYRLYRGLPALPRVDESDPLVHKIRGQG---GM---TVRQIRRLVQQSFDIAQQ 331

Query: 259 ---------------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN 302
                          + TAH LRH+ ATH  +    L+ +   LGH +++TT QIY   N
Sbjct: 332 SLLDDGFKDDAEQLEAATAHWLRHTGATH-DAQTRPLKHLSEDLGHAKIATTDQIYIQTN 390

Query: 303 SKN 305
            K 
Sbjct: 391 IKE 393


>gi|295840979|dbj|BAJ06861.1| integron integrase intI [uncultured bacterium]
          Length = 423

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 90/225 (40%), Gaps = 58/225 (25%)

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           +L+ +  F K++  R+ + +   +     KK   LP  L++ +  TL  ++         
Sbjct: 216 ALNALVYFYKHVLDREPSEDIQFVRS---KKPKRLPVVLSQDEISTLFAHI--------- 263

Query: 151 WIDARNSAILY---LLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPL---- 202
               RN   L    LLYGCG+R+ E + +   ++  D   L I+G KG K R+ P+    
Sbjct: 264 ----RNPTFLLMANLLYGCGMRLMECVRIRILDVDFDYQQLLIRGAKGKKDRVAPIPAKL 319

Query: 203 -------LPSVRK-----------------AILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
                  L  VR                  A+   Y     +       P  R +   P 
Sbjct: 320 VTTLKSHLTGVRNMHDEDLAQGYGSVYLPGALARKYPNAKKEFRWQFVFPSVR-VSADPR 378

Query: 239 NPGVFQRYIRQ--LRRYL-------GLPLSTTAHTLRHSFATHLL 274
           +  + + +I Q  L+ +L       G+    + HTLRHSFATHLL
Sbjct: 379 SGEIRRHHIHQTGLQHHLKRAADSSGINKKVSCHTLRHSFATHLL 423


>gi|310642299|ref|YP_003947057.1| integrase family protein [Paenibacillus polymyxa SC2]
 gi|309247248|gb|ADO56815.1| Integrase family protein [Paenibacillus polymyxa SC2]
          Length = 366

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 129/344 (37%), Gaps = 66/344 (19%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQL---SYTEIRAFISKRRTQ 81
           LS  TL  Y  D   F  +L      A  T  ++T++ +  L   S T  R F+S +R  
Sbjct: 34  LSPSTLLEYVRDYEAFFSWLRSEGLSAGETNAQVTLEELETLHMDSITGFRLFLSTKREG 93

Query: 82  KIGDRSLKRSLSGIKSFLKYLK------------KRKITTESNILNMRNLKKSNSLPRA- 128
                ++ R LS ++S   YL             KR I  +  I  +   K + +  +  
Sbjct: 94  SNSRITISRKLSSLRSLFHYLSQIAEDENFYPLLKRNIMAKVEIKRVHKPKDTAAKLKGK 153

Query: 129 -------------LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
                        + E     L DN     S+E      R++ I  L+   GLR+SE ++
Sbjct: 154 ILEEEELLEFIGYIYEGYGQDLADNKQALYSYELN--KERDACIASLILNSGLRVSEIVN 211

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-------- 227
           L   ++  +   L +  KG+            K  + + +    DL L + L        
Sbjct: 212 LNMDDLDINNKLLYVYRKGNNDETF-------KTPVYFREQSKDDLALYLSLRHTRYRAP 264

Query: 228 ----PLFRG-----IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT-HLLSNG 277
                LF         GK +     Q  I +  +  G P   T H LRHSFAT + L N 
Sbjct: 265 KKEKALFVARPNGSTEGKRMTKRAIQAMIIKYAKRFGKPY-LTVHKLRHSFATDYYLQN- 322

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM-MEIYDQTHPS 320
            D+   +  LGH    TT++Y ++  K     +   I  QT P+
Sbjct: 323 -DIYKTKEQLGHASTETTEVYAHLTDKTMSQAIERRIETQTDPA 365


>gi|300853246|ref|YP_003778230.1| phage integrase-like protein [Clostridium ljungdahlii DSM 13528]
 gi|300433361|gb|ADK13128.1| phage integrase related protein [Clostridium ljungdahlii DSM 13528]
          Length = 391

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 103/250 (41%), Gaps = 60/250 (24%)

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA--LNEKQALTLVDNVLLHTSHE-TKW 151
           +KSF  Y        E  I+    + KS ++P +  +NE +     D++ + T  E  ++
Sbjct: 140 LKSFFNYC-----IDEGYIVRNYCIGKSITIPESNSVNENKK----DDITVFTVDEQNQF 190

Query: 152 IDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR----------IQGKGDKI 197
           I+A    R  A+  L  G GLR  E L L   +I  +  TL           I+G     
Sbjct: 191 INAVQDHRLKALFLLDLGTGLREGEILGLKWSDIDFENCTLSVKRAIKGVTLIEGTKRNY 250

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-------------------------FRG 232
            ++   P  + +I       PF  NL   +P+                         F  
Sbjct: 251 HLIEQTPKTKNSI----RTIPFPENL---IPILEKHQLQQKEEKIKAGPAYTKNDYVFCT 303

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
             G P++P   +R   ++ +   +P     H+LRH+FAT L  N   L+++Q +LGH  +
Sbjct: 304 ELGLPIDPRNLRRSYERVLKNNNIPYKK-FHSLRHTFATRLFENNVPLKTVQMLLGHSNI 362

Query: 293 S-TTQIYTNV 301
           + T  IYT+V
Sbjct: 363 NITANIYTHV 372


>gi|291531296|emb|CBK96881.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 391

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 2/68 (2%)

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TT 295
           P++P      ++ L +   LPL    H LRH+FATH L+ G D +++  ILGH   S T 
Sbjct: 299 PMHPDYAYHRLKTLLKQAELPL-IRFHDLRHTFATHALAGGVDAKTLSGILGHTNASFTL 357

Query: 296 QIYTNVNS 303
             YT+V +
Sbjct: 358 DTYTHVTT 365


>gi|224542974|ref|ZP_03683513.1| hypothetical protein CATMIT_02168 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524112|gb|EEF93217.1| hypothetical protein CATMIT_02168 [Catenibacterium mitsuokai DSM
           15897]
          Length = 354

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 69/171 (40%), Gaps = 28/171 (16%)

Query: 151 WIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL------- 202
           W+ A R+ AI  LL   G RI E  +   +++  ++  +++ GKG K R+  L       
Sbjct: 187 WLKAVRDQAIFELLLTTGCRIGELTTAKIKDLDLERKEIKVFGKGAKERVCYLNTLSVLR 246

Query: 203 ---LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY-----IRQLRRYL 254
                  RK I   Y     D              GK  N    Q       IR+L R  
Sbjct: 247 MQQWLEARKDIENEYIFVSCD-----------SANGKKGNHARLQISGVEINIRKLGREC 295

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           G   +   H  R + AT  L  G  +  +Q +LGH ++ TT IY   ++K+
Sbjct: 296 GFE-NIHPHRFRRTAATTALRKGMPIEQVQLMLGHEQIDTTMIYAKTDTKS 345


>gi|186687030|ref|YP_001870419.1| integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186469654|gb|ACC85451.1| integrase family protein [Nostoc punctiforme PCC 73102]
          Length = 200

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 11/155 (7%)

Query: 155 RNSAILYLLYGCGLRISEALS----LTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKA 209
           R+  ++ L++  GLR+ EA+     L    +M  +  + I + KG    + PL       
Sbjct: 42  RDYTLMLLMFRHGLRVGEAVGAKCGLRWDAVMWGERQIFITREKGSDSGVHPLRDDELVL 101

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           + E  ++ P          +F   RG+ ++    ++ + +L    GL +    H +RH+ 
Sbjct: 102 LKELREMLP------DSKYIFVSERGEVMSTDAVRKLLGRLAAQAGLDIKVHCHMMRHAC 155

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +L++ G + R IQ  LGH  +  T+ YT +N++
Sbjct: 156 GYYLVNQGYNTREIQDFLGHRDIKHTEKYTKLNAR 190


>gi|294782725|ref|ZP_06748051.1| integrase/recombinase, phage integrase family [Fusobacterium sp.
           1_1_41FAA]
 gi|294481366|gb|EFG29141.1| integrase/recombinase, phage integrase family [Fusobacterium sp.
           1_1_41FAA]
          Length = 323

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 53/252 (21%), Positives = 110/252 (43%), Gaps = 27/252 (10%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK----SFLKYLKKRKITTESNILNM 116
           ++I ++   ++R ++S     +I + S K ++  I+    SF  +L+      +S +  +
Sbjct: 82  KSIVEIETEDLRTYLS---DYQINNNSSKVTIDNIRRILSSFFSWLENENYIIKSPVRRI 138

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           + +K  + +     +++  T+ DNV             R+  ++ +L   G+R+ E + L
Sbjct: 139 KKVKAPSIVKETYTDEELETMRDNVEA----------LRDLVLIDILASTGMRVGELVKL 188

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR---KAILEYYDLCPFDLNLNIQLPLFRGI 233
             ++I   +    + GKG+K R+V      +   K  LE        L ++++ P  R  
Sbjct: 189 NIEDINFTERECIVLGKGNKERVVYFDARTKIHLKRYLENRKDNNKALLISLKAPCNR-- 246

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
               L+    +  +R++   LG+      H  R + AT  +  G  +  +Q +LGH ++ 
Sbjct: 247 ----LSIAGVELRLRKIGEKLGIK-KVHPHKFRRTLATIAIDKGMPIEQVQKLLGHEKID 301

Query: 294 TTQIYTNVNSKN 305
           TT  Y  V   N
Sbjct: 302 TTLQYAMVKQSN 313


>gi|300775803|ref|ZP_07085664.1| integrase [Chryseobacterium gleum ATCC 35910]
 gi|300505830|gb|EFK36967.1| integrase [Chryseobacterium gleum ATCC 35910]
          Length = 416

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGD 308
            T H  RH+FAT  LS G  L S+  +LGH  ++TTQIY  + N K G D
Sbjct: 348 VTFHLARHTFATLFLSEGVPLESLSKMLGHKNIATTQIYAKILNEKVGKD 397


>gi|27469263|ref|NP_765900.1| integrase-like protein [Staphylococcus epidermidis ATCC 12228]
 gi|27316813|gb|AAO05988.1|AE016752_21 integrase-like protein [Staphylococcus epidermidis ATCC 12228]
          Length = 175

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 25/167 (14%)

Query: 168 LRISEALSLTPQNIMDDQSTLRIQG------KGDKI------------RIVPLLPS---- 205
           +RI E L++ P+NI      L I G      +G+ +            R + L       
Sbjct: 1   MRIGELLAIQPENIDFKNKKLIIDGTIHWRKEGNNLGFKDTTKTALSYRTISLTTRSCDI 60

Query: 206 VRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           +RK +LEY     +  N+ +    +F   +G P++     R I+   + +G+    T+HT
Sbjct: 61  LRKVMLEYKKAFQWK-NMYVDRDFIFTNHKGNPISLTSINRNIQIAAKNVGIKKHITSHT 119

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           +RHS  + L   G  LR+I   +GH    TT QIY++V  +   D M
Sbjct: 120 MRHSHISLLSQLGISLRAIMDRVGHTDHKTTLQIYSHVTEQMDKDMM 166


>gi|295841273|dbj|BAJ07042.1| integrase [uncultured bacterium]
          Length = 278

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 124/300 (41%), Gaps = 65/300 (21%)

Query: 17  ERQNWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           E++  L ++ +E   R  S  T Q+Y    R+F+    F+  ++ +     ++   EI  
Sbjct: 2   EKKRLLVSMRVEIRFRHYSLRTEQTYNQWVRRFI----FFHNKRHS----GEMGEKEISL 53

Query: 74  FISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           F++    ++ +   +  ++LS +    K++ K  +    N++     K+   LP  L + 
Sbjct: 54  FLTHLAVERNVAAATQNQALSALLFLYKHVLKLNLEWLDNVVRA---KRPERLPVELTQA 110

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ- 191
               ++ N            D  N  I  L+YG G+R  E L L   +I  +   + ++ 
Sbjct: 111 GVADILGNT-----------DGVNGLIARLIYGTGMRKMECLRLRVTDIDFEYQQIHVRS 159

Query: 192 GKGDKIRI----VPLLPSVRKAILEYYDLCPFDLNLN---IQLP---------------- 228
           GKG+K RI    V ++P +R  +     L   DL      ++LP                
Sbjct: 160 GKGNKDRITLLPVSIIPQLRSQLESTAALHKIDLKEGYGEVELPHALERKYPNAGWEWRW 219

Query: 229 --LFRGIRGKPLNP--GVFQRY----------IRQLRRYLGLPLSTTAHTLRHSFATHLL 274
              F   R + ++P  GV +R+          I+Q    L +      HTLRH+FATHLL
Sbjct: 220 QYAFPATR-RSVDPRTGVIRRHHCYDTNVSRAIKQAVHSLHIQKHVGVHTLRHTFATHLL 278


>gi|254498878|ref|ZP_05111583.1| putative integrase/recombinase [Legionella drancourtii LLAP12]
 gi|254351863|gb|EET10693.1| putative integrase/recombinase [Legionella drancourtii LLAP12]
          Length = 332

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 70/165 (42%), Gaps = 22/165 (13%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR-----KAILE 212
           I  LLYGCG R+SE L+L  +++   Q  + I +GK  K R+VP  P++      +   E
Sbjct: 148 IFRLLYGCGFRLSEVLNLRVRDVDLKQGVITIREGKHGKDRLVP--PALDMVERLRVYAE 205

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-----STTAHTLRH 267
             D    +         F    G     G      R++    G+P          H LRH
Sbjct: 206 SIDTNSLEKRTEDTF-FFPSPSGSCWGKGTIYTLFRKMLLQCGIPHGGRGKGPRVHDLRH 264

Query: 268 SFATHLL----SNGGDLRS----IQSILGHFRLSTTQIYTNVNSK 304
           +FA H L      G DL +    + + LGH   + TQ Y ++ ++
Sbjct: 265 TFAVHRLVQWYEEGCDLNAKLPFLVAYLGHKNFTGTQKYLHLTAE 309


>gi|258406644|ref|YP_003199385.1| integrase family protein [Desulfohalobium retbaense DSM 5692]
 gi|257798871|gb|ACV69807.1| integrase family protein [Desulfohalobium retbaense DSM 5692]
          Length = 218

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 77/184 (41%), Gaps = 42/184 (22%)

Query: 150 KWIDA-----------RNSAILYLLYGCGLRISEALSLTPQ-NIMDDQSTLRI----QGK 193
           KW DA           R+  I   L   G R+ E L +    +I   +S +R+    +G 
Sbjct: 39  KWFDASPTPTKRRIRGRHWLIFLTLRHTGARLGEVLQIRDDFDINTRESEIRVTTLKRGT 98

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK--PLNPGVFQRYIRQLR 251
           G+K R+VP++P +   I  Y    P              IRGK   L+   F++    L 
Sbjct: 99  GEK-RLVPVVPELISEIASYLMDYP-------------EIRGKLFSLDASNFRKRFYDLA 144

Query: 252 RYLGL----------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              G+           L    HTLRH+ A  LLS G  + ++Q +LGH  L TT  Y  +
Sbjct: 145 DQAGMLEEEYMDGRRELFPHPHTLRHTRAMELLSAGVPVTAVQDLLGHSSLLTTAQYLRL 204

Query: 302 NSKN 305
           + ++
Sbjct: 205 SGQD 208


>gi|147678247|ref|YP_001212462.1| integrase [Pelotomaculum thermopropionicum SI]
 gi|147678630|ref|YP_001212845.1| integrase [Pelotomaculum thermopropionicum SI]
 gi|147678993|ref|YP_001213208.1| site-specific recombinase [Pelotomaculum thermopropionicum SI]
 gi|146274344|dbj|BAF60093.1| integrase [Pelotomaculum thermopropionicum SI]
 gi|146274727|dbj|BAF60476.1| integrase [Pelotomaculum thermopropionicum SI]
 gi|146275090|dbj|BAF60839.1| site-specific recombinase [Pelotomaculum thermopropionicum SI]
          Length = 376

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 104/240 (43%), Gaps = 33/240 (13%)

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           +++  S  G K FL ++ K K    + IL    +K   S P+ ++++Q   L+D      
Sbjct: 135 KTIPGSRRGFKDFLYHVNKDK-EYPAKILK---VKVRRSRPKTISKEQVGKLIDAC---- 186

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD---------- 195
                  + RN  ++ LL+   +RI EAL+L  ++   D   + I+ +G+          
Sbjct: 187 ------SNLRNKFLIQLLWESSIRIGEALALWLEDFEPDGQKIHIRDRGELPNLAEIKTI 240

Query: 196 -KIRIVPLLPSVRKAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
              R V + P +     +Y   +     D N ++ + L    R +P+         R+L+
Sbjct: 241 CSPRTVDVSPDLINLFFDYVAEFHTDEVDTN-HVFIKLSGENRYQPMEYQDVASLFRRLK 299

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL-STTQIYTNVNSKN-GGDW 309
              G+ +S   H LRHS  T L   G     ++   GH  + +TTQIY + + ++   DW
Sbjct: 300 AKTGIGVS--PHILRHSSLTELRRAGWKPEHLRKRAGHAHVQTTTQIYLHPSDEDMRKDW 357


>gi|304381559|ref|ZP_07364209.1| prophage L54a integrase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|304339922|gb|EFM05866.1| prophage L54a integrase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
          Length = 406

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 30/171 (17%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGK---------GDKIRIVPLLPS------------ 205
           G+RI E L++  ++I  D  +L I G          G  ++      S            
Sbjct: 230 GMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSC 289

Query: 206 --VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
             ++KAILE      ++   LN N    +F   +G P+    F + +R+  + +G+    
Sbjct: 290 EILKKAILENKKDSKWNDGYLNRNF---VFTNHKGNPMQTERFNKILREAAKDVGIDKEV 346

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           ++H LRH   + L   G  L++I   +GH    TT  IY++V  +   D M
Sbjct: 347 SSHILRHRHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMM 397


>gi|224023433|ref|ZP_03641799.1| hypothetical protein BACCOPRO_00133 [Bacteroides coprophilus DSM
           18228]
 gi|224016655|gb|EEF74667.1| hypothetical protein BACCOPRO_00133 [Bacteroides coprophilus DSM
           18228]
          Length = 452

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/149 (21%), Positives = 67/149 (44%), Gaps = 14/149 (9%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLL-PSV---------R 207
             +  + CGLR+ + ++L   ++  ++  LR I  K +K  ++PL  P++         R
Sbjct: 279 FFFAFHACGLRVVDVMTLQWGHVNFEKKELRKIMIKTNKRHVIPLTEPAIHILRQWQEKR 338

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +     ++L   +L L+ +  L++             + +  +   +GLP + + H  RH
Sbjct: 339 EGCRYVFNLVKENLELDDEEALYKARNNAT---KCINQSLAVVGEQIGLPFNLSMHVARH 395

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           +FA   L+ G  +  +  +LGH     T+
Sbjct: 396 TFAVFALNKGLSMSVVSRLLGHGSTDVTE 424


>gi|218508164|ref|ZP_03506042.1| site-specific tyrosine recombinase XerD [Rhizobium etli Brasil 5]
          Length = 54

 Score = 46.2 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 5/58 (8%)

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           +HLL+NG DLR +Q +LGH  +STTQIYT+V  +      ++   QTH  + ++ KK+
Sbjct: 1   SHLLANGADLRVVQELLGHSDISTTQIYTHVLEER-----LQQLVQTHHPLAKQAKKH 53


>gi|167758604|ref|ZP_02430731.1| hypothetical protein CLOSCI_00944 [Clostridium scindens ATCC 35704]
 gi|167663800|gb|EDS07930.1| hypothetical protein CLOSCI_00944 [Clostridium scindens ATCC 35704]
          Length = 431

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 136/318 (42%), Gaps = 20/318 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSK-LTLQSYECDTRQFLIFLA---FYTEEKITIQTIRQ 65
           +  ++ K    +L   E ER + + L  ++Y  +TR  ++++     +  EK+  +T+  
Sbjct: 113 IHLKMPKHGTKYLIKAENERLIDRFLDYKNYGPNTRDDVVWVVRRYLFHFEKLGHETLEH 172

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +S  E+R FI K   + +   SL   L  +K F  +LK+  I    +   + + K    +
Sbjct: 173 VSVDEVRKFILKTAAE-VKTSSLHNILLYLKHFHIFLKETGIPA-PDCTGLFSYKVYRDM 230

Query: 126 P-RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           P +     + L  +  V+   S   K    R+ AI+ +    GLR  + + L   +I   
Sbjct: 231 PIQGYVTDEELERILAVIDTESDMGK----RDRAIILMAATTGLRACDLIRLKLSDIDWR 286

Query: 185 QSTLRI-QGKGDKIRIVPLLPSVRKAILEY------YDLCPFDLNLNIQLPLFRGIRGKP 237
           +  +R+ Q K  +   VPL+  V  A+ +Y         CP ++ L    P    I    
Sbjct: 287 KGEIRLCQKKTGRTVYVPLVNQVGSALQDYILNARPVSDCP-EVFLRAVAPK-TAIANAV 344

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
               +FQ+Y ++             H LR   A  LL  G  L +I  ILGH  L + + 
Sbjct: 345 CIGSMFQQYQKKAGIARHAFDGKGFHGLRRRLAKKLLVTGTSLTTIAQILGHDDLKSLRQ 404

Query: 298 YTNVNSKNGGDWMMEIYD 315
           Y +++++N  +  ++  D
Sbjct: 405 YLSLDTRNLKECALDFRD 422


>gi|160700678|ref|YP_001552358.1| gp29 [Mycobacterium phage Giles]
 gi|159136628|gb|ABW88424.1| gp29 [Mycobacterium phage Giles]
 gi|302749835|gb|ADL66924.1| Int [Cloning vector pGH1000A::zeo-ID]
          Length = 397

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 22/164 (13%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI---------------RIVPLLP 204
           L L+   GLR  EAL+L    +  D  +LR+     ++               R VPL P
Sbjct: 211 LLLIAATGLRAGEALALRWDAVDLDAGSLRVVATVGRVERRLRLTTPKTERSRRTVPLTP 270

Query: 205 SVRKAILEYY--DLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
            +   +  +    L       N+      +F    G+P++P    R + Q    +GL   
Sbjct: 271 DMVSMLRRHRADQLAERLRAANVWEDHGLVFPSAFGRPVDPRNLLRVVEQAAAQVGLE-G 329

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN 302
              HTLRH+ A  +L  G  +R++  ILGH  ++ T  IY + +
Sbjct: 330 VGVHTLRHAAAVAMLEAGIHIRAVADILGHSSVAVTGDIYGHTS 373


>gi|229100447|ref|ZP_04231307.1| Tyrosine recombinase [Bacillus cereus Rock3-29]
 gi|229119098|ref|ZP_04248435.1| Tyrosine recombinase [Bacillus cereus Rock1-3]
 gi|228664356|gb|EEL19860.1| Tyrosine recombinase [Bacillus cereus Rock1-3]
 gi|228682953|gb|EEL36971.1| Tyrosine recombinase [Bacillus cereus Rock3-29]
          Length = 224

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 8/152 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AIL L  G G+R+SE   L  ++I   +  + +  KG+K   V + P     I +Y 
Sbjct: 59  RDVAILSLFLGSGIRVSELADLRMEDINLKERLIDVIRKGNKEDSVWITPIALNDIEKYM 118

Query: 215 DL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           ++      P     N+ L  ++    +PL+    Q  + +  +  G  +S   H LRH+ 
Sbjct: 119 EIRDNKYAPGKELKNVFLSKYKHT-AQPLSVRAIQDIVEKYTKAYGKRMS--PHKLRHTL 175

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           A  L     D   +   LGH    T  +YT +
Sbjct: 176 ANKLYMEEKDSLQVMQQLGHTSQDTALLYTQL 207


>gi|114762955|ref|ZP_01442385.1| Phage integrase [Pelagibaca bermudensis HTCC2601]
 gi|114544279|gb|EAU47287.1| Phage integrase [Roseovarius sp. HTCC2601]
          Length = 316

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 135/311 (43%), Gaps = 44/311 (14%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +P+ ++  +    ++WL+  E  + L + TL++Y    R        + E KI    +  
Sbjct: 1   MPQTMTKTVTDACESWLKTCERNQ-LERSTLKAYRSHAR-------VHIEPKIGDLLLGD 52

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSN 123
           LS  ++R F+ +     I    +++ +  +++ L    +R+      +  + MR  ++S 
Sbjct: 53  LSRGQVRDFMHELLDDGISQALVRKVMVSLRAVLSEAVEREWIEHDVATDVKMRRRRRSE 112

Query: 124 SLPRALNEKQALTL-VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           S  R +  K  + L V+N     SH   +I    +AI       G+RISE   LT  N+ 
Sbjct: 113 SDERVIPTKDEIRLIVENA--PASHRAMFI----AAIF-----TGMRISELRGLTWDNVD 161

Query: 183 DDQSTLRIQGKGDKI------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
            D+  + ++ + D+             R +P+ P VR  + ++    P    + +Q  +F
Sbjct: 162 LDRGLVHVRQRADEHCVLGKPKSRAGHRDIPMTPLVRDTLAQWQRTVP----VTVQNLVF 217

Query: 231 RGIRGKPLN-PGVFQRYIRQLRRYLGLPLSTTA-----HTLRHSFATHLLSNGGDLRSIQ 284
               GK  N   ++ R  + +    G+  +        H LRH+ A+  +  G + + IQ
Sbjct: 218 PNGAGKIQNYSNIYNRVFKPMLVANGIVDAAGEPKFGLHALRHAAASLFIEQGWNPKKIQ 277

Query: 285 SILGHFRLSTT 295
           ++LGH  ++ T
Sbjct: 278 TLLGHASITMT 288


>gi|40218637|gb|AAR83256.1| PZ15b [Helicobacter pylori]
          Length = 357

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 122/270 (45%), Gaps = 33/270 (12%)

Query: 48  IFLAF-YTEEKITIQTIRQLSYTEIRAFI---SKRRTQKIGDRSLKRSLSGIKSFLKYL- 102
           +FL F Y + +I ++++  L+  ++  F+   +K R       S+ + +  ++ F  YL 
Sbjct: 77  LFLFFEYFDNRIKLKSLHNLAEEQVIDFLFGLAKNRKPS----SMAKYVMVLRQFFDYLD 132

Query: 103 KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
           KKR  + +  + N+   KK   LP+ LN+      +  +L +  H     + RN  IL L
Sbjct: 133 KKRNYSFDFELKNLSFAKKETHLPKHLNKNDFKAFIQALLKY--HPKTSFEKRNQCILLL 190

Query: 163 LYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           +   GLR  EAL L  +NI   ++   L I+GK +K R       + K  L+     P +
Sbjct: 191 IVLGGLRKFEALDLELKNIALENNHYRLLIKGKNNKERY----AYIEKEFLQ----VPLN 242

Query: 221 LNLN--IQLPLFRG--IRGKPLNPGV-----FQRYIRQLRRYLGLPLSTTA---HTLRHS 268
             L+   +L  F+G  +  K  N         + +I ++ +   + + +     H  RHS
Sbjct: 243 AWLSDIKRLKSFKGRFVFKKAKNNTTQKTCSLKGFIAKIFKLSNIDVKSYGLGLHLFRHS 302

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           FAT +     DL      LGH  L +T+IY
Sbjct: 303 FATFIYDETQDLVLTSRALGHSSLLSTKIY 332


>gi|163790313|ref|ZP_02184745.1| integrase [Carnobacterium sp. AT7]
 gi|159874384|gb|EDP68456.1| integrase [Carnobacterium sp. AT7]
          Length = 382

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 115/283 (40%), Gaps = 46/283 (16%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           +TI  + YTE  +F S ++ + +           + S L++ KK+ I   + +L +   K
Sbjct: 115 ETIESIYYTENYSFSSTKQCKTL-----------LNSILEFAKKKTIIAVNPVLEVEIKK 163

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA--------RNSAILYLLYGCGLRISE 172
           K    P+     + +  + N  L        +D         RN+ +   L   GLR  E
Sbjct: 164 K----PKTF---EQIEKIGNKYLEPDELKTVLDCLRSFKSGRRNANLTEFLSLTGLRFGE 216

Query: 173 ALSLTPQNIMDD---------------QSTLRIQGK-GDKIRIVPLLPSVRKAILEYY-- 214
           A++LT  N  +D                + ++   K G   R V L    ++ I+E    
Sbjct: 217 AVALTYDNFKNDFIEVNGTLDYHTHKSSAGIKTTAKTGKANRNVDLSDRAKEIIIEVILE 276

Query: 215 -DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
             L   + +   +  +F    G P++   +   ++   +  G+  + T+H LRH+  + L
Sbjct: 277 NKLLKKEEHFQEKNYIFVTKYGNPIDIATYNTSLKIAAKKCGIEKNLTSHVLRHTHISIL 336

Query: 274 LSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYD 315
              G  L++I   +GH R  TT  IYT+V  K     M ++ D
Sbjct: 337 SEIGVPLKAIMDRVGHERPETTLGIYTHVTKKMQQGVMQKLND 379


>gi|301165050|emb|CBW24618.1| putative integrase [Bacteroides fragilis 638R]
          Length = 197

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
           R+  +L LLY  G R+ E + LTP +I MD    + + GKGDKIR VPL  S+   I  Y
Sbjct: 109 RDLTMLSLLYNSGARVQELIDLTPDSIRMDKPYCIILHGKGDKIRQVPLENSIINLIKCY 168

Query: 214 YD 215
            +
Sbjct: 169 VE 170


>gi|254498949|ref|ZP_05111653.1| Phage integrase [Legionella drancourtii LLAP12]
 gi|254351853|gb|EET10684.1| Phage integrase [Legionella drancourtii LLAP12]
          Length = 191

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 82/193 (42%), Gaps = 16/193 (8%)

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           M+  KK  +  R + E      +D  L+H +  T     R++ ++ + +  GLR+SE +S
Sbjct: 1   MKPPKKIKNSARRVREHLTPAEID-ALIHAAKSTGRHGLRDATMILMAFRHGLRVSELVS 59

Query: 176 LTPQNIMDDQSTLRIQGKGDKIR-----IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
           L   ++   Q  L +    + I        P L ++R+   +Y D             +F
Sbjct: 60  LRWSHVDLKQGLLYVVRLKNGIASQHPLFGPELRALRQLQRDYPDTDY----------IF 109

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
              R  P+    F++ + +      + +    H LRHS    L ++G D RSIQ  LGH 
Sbjct: 110 MSERLSPMTTDTFRKIVARAGELAKIGMPIHPHMLRHSTGFKLANDGRDTRSIQHYLGHK 169

Query: 291 RLSTTQIYTNVNS 303
            +  T  YT + +
Sbjct: 170 NIQHTVRYTEIAA 182


>gi|326201197|ref|ZP_08191069.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
 gi|325988765|gb|EGD49589.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
          Length = 235

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 6/153 (3%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           LLY  G+R+SE +++   N+      +RI  GKG+K RIVP   S ++ +  +++    +
Sbjct: 82  LLY-TGVRVSELINIKLDNVDFQDCQIRINNGKGNKDRIVPFPHSFKELLAMHHN----N 136

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
           +  N    LF     K       ++ + +      L  S + H LRH   T L   G D 
Sbjct: 137 MKKNNASYLFESSWKKKYTDRGIRKIMAKYSEKANLQKSLSPHKLRHFLFTWLKKQGIDD 196

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             IQ   GH    T ++Y+ ++  +  +   E+
Sbjct: 197 SLIQPYSGHESRQTLEVYSKLSLADAQEKYNEV 229


>gi|325912538|ref|ZP_08174926.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners UPII 60-B]
 gi|325478159|gb|EGC81283.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners UPII 60-B]
          Length = 329

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/251 (20%), Positives = 107/251 (42%), Gaps = 25/251 (9%)

Query: 61  QTIRQLSYTEIRAFISK----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           + +R++   ++R ++++    + + K+   +++R LS   SF  +L+      +S    +
Sbjct: 88  KNVREMETDDLRTYLTEYQHEKNSSKVTVDNIRRILS---SFFSWLEDENYILKSPARRI 144

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             +K + ++     ++    + D+            + R+ A++ +L   G+R+ E + L
Sbjct: 145 HKVKAALTIKETYTDEALEKMRDSCE----------EPRDLALIDILASTGMRVGELVLL 194

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG- 235
              +I  ++    + GKG K R+V      +  +L Y      D        LF  +R  
Sbjct: 195 NRDDINFEERECVVFGKGSKERMVYFDARTKIHLLTYLQGRTDD-----NPALFVSLRAP 249

Query: 236 -KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            + L  G  +  +R+L   L +      H  R + AT  +  G  +  +Q +LGH R+ T
Sbjct: 250 HERLKIGGVECRLRELGNKLDIE-KVHPHKFRRTLATMAIDKGMPIEQLQQLLGHKRIDT 308

Query: 295 TQIYTNVNSKN 305
           T  Y  V   N
Sbjct: 309 TLQYAMVKQSN 319


>gi|150007997|ref|YP_001302740.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|298378107|ref|ZP_06988045.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           3_1_19]
 gi|149936421|gb|ABR43118.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|298264989|gb|EFI06664.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           3_1_19]
          Length = 311

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 33/56 (58%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           F R ++ L R  G+ L  T++T+RHSFA+ L      +  I  +LGH  + TTQIY
Sbjct: 228 FNRDLKLLARSTGVTLPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIY 283


>gi|258438228|ref|ZP_05689512.1| transposase B [Staphylococcus aureus A9299]
 gi|58577495|emb|CAG29648.1| transposase B [Staphylococcus lentus]
 gi|124001376|emb|CAL64014.1| transposase B [Staphylococcus warneri]
 gi|257848272|gb|EEV72263.1| transposase B [Staphylococcus aureus A9299]
          Length = 639

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 59/268 (22%), Positives = 106/268 (39%), Gaps = 26/268 (9%)

Query: 49  FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI- 107
           F  F  +    IQ I QL+  EI  + +    + +   ++   +S +  F   +++    
Sbjct: 253 FFNFMNKNCEGIQRIHQLTRNEIEQYFNYINLKGLKPSTVTGRISTLDVFFTTIQRYDWK 312

Query: 108 TTESNILNMRN--LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
            T S IL  +    K   +LPR ++E        ++L   + +   ++   + ++ +L  
Sbjct: 313 DTPSKILIFQEDYPKVPKALPRYIDE--------HILEQLNGKLDKLEPYIATMVMVLQE 364

Query: 166 CGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPSVRKAIL--------EY 213
           CG+RISE  +L   +++ D+         Q K  K  I+P+   +   IL        E 
Sbjct: 365 CGMRISELCTLKKGSVITDKEGDCFLKYYQWKMKKEHIIPISKEIAALILVQEQRVADEL 424

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            D C +        PL +      LN   ++  I       G      AH  RH+  T +
Sbjct: 425 DDGCVYVFPRKDCSPLKQDTFRVKLNELAYEEKITDSN---GEIFRFHAHAFRHTVGTRM 481

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           ++NG     +Q  LGH     T  Y ++
Sbjct: 482 INNGVPQHIVQKFLGHESPEMTARYAHI 509


>gi|293373254|ref|ZP_06619614.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292631777|gb|EFF50395.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 411

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 19/147 (12%)

Query: 162 LLYGC--GLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD 215
            L+ C  G+  S+   LT +N+ + +     I+    K  +   +PL+      I +Y D
Sbjct: 253 FLFSCYTGIPYSDMCMLTNENLSLAEDGIWWIRSSRKKTGVDFEIPLMELPLHIIEKYRD 312

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
           + P        LP++               Y++Q+    G+      H  RH++AT + L
Sbjct: 313 VAP----EGKLLPMYSN--------SSLNHYLKQIAVLCGIERKLVFHVARHTYATEITL 360

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301
           S+G  L ++  +LGH R+ TTQ+Y  V
Sbjct: 361 SHGVPLETVSKMLGHSRIGTTQLYAKV 387


>gi|293392349|ref|ZP_06636674.1| type 1 fimbriae regulatory protein FimB [Serratia odorifera DSM
           4582]
 gi|291425146|gb|EFE98350.1| type 1 fimbriae regulatory protein FimB [Serratia odorifera DSM
           4582]
          Length = 179

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 61/150 (40%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            R+  I+YL +  GLR+SE  SL   +I  ++ T+ I    +    +  L      +L  
Sbjct: 26  VRDYCIVYLSFTHGLRVSELCSLRLSDIDLEERTICIYRLKNGFSTIHPLRDKEVVMLRA 85

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
           +     + N      +F   +G  ++       I  L     +P+    H LRHS    L
Sbjct: 86  WFKLRDEFNGADSEWVFLSAKGLKISRKRVYSLISNLGVMANIPVKVHPHMLRHSCGFAL 145

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              G D R IQ  LGH  +  T  YT  NS
Sbjct: 146 ADQGVDTRLIQDYLGHRNIQHTVTYTASNS 175


>gi|260462340|ref|ZP_05810548.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
 gi|259031834|gb|EEW33102.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
          Length = 367

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 30/154 (19%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
            L   G R+ EAL L   +I + + +  I   G + R +P+   V++ I           
Sbjct: 166 FLVDSGCRLGEALGLIWNDIQEHRVSFWITKSG-RSRTIPMTERVKEVI----------- 213

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY----------LGLPLSTTAHTLRHSFAT 271
               +LP   G R K    G F ++ +   R           LG       H LRH+ A+
Sbjct: 214 ----KLPPAEGRRPK----GPFTKFSQAQFRAIWNEAKAEVGLGADDQVVPHILRHTCAS 265

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            L+  G D+R +Q  LGH  LS T  Y ++ + +
Sbjct: 266 RLVQGGIDIRRVQMWLGHQTLSMTMRYAHLATND 299


>gi|159039274|ref|YP_001538527.1| integrase family protein [Salinispora arenicola CNS-205]
 gi|159039325|ref|YP_001538578.1| integrase family protein [Salinispora arenicola CNS-205]
 gi|157918109|gb|ABV99536.1| integrase family protein [Salinispora arenicola CNS-205]
 gi|157918160|gb|ABV99587.1| integrase family protein [Salinispora arenicola CNS-205]
          Length = 445

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G P++P    R  + L    G+      H  RH+ AT LL+ G D+R +Q +LGH  +  
Sbjct: 357 GGPIDPAEDWREWKTLIADAGV-RDARVHDGRHTAATLLLAQGVDIRVVQELLGHSSIKV 415

Query: 295 TQIYTNVNSK 304
           T+ YT+V SK
Sbjct: 416 TEGYTHVASK 425


>gi|319784519|ref|YP_004143995.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317170407|gb|ADV13945.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 364

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 26/175 (14%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           DA   ++  +  GC  R+ EAL L   +I + + +  I   G + R +P+   V++ I  
Sbjct: 160 DAYRLSVFLVDTGC--RLGEALGLIWNDIQEHRVSFWITKSG-RSRTIPMTERVKEVI-- 214

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLS--TTAHTLR 266
                        +LP   G R K     L+   F+      +  +GL        H LR
Sbjct: 215 -------------KLPPTEGRRPKGPFTKLSQAQFRAIWNDAKAEVGLGADDQVVPHILR 261

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV--NSKNGGDWMMEIYDQTHP 319
           H+ A+ L+  G D+R +Q  LGH  LS T  Y ++  N  +G   ++E    T P
Sbjct: 262 HTCASRLVQGGIDIRRVQMWLGHQTLSMTMRYAHLATNDLDGCVIVLETPRSTQP 316


>gi|295107909|emb|CBL21862.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 308

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 24/149 (16%)

Query: 162 LLYGCGLRISEALSLTPQN------IMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAI 210
           L+   G+R SEAL+LTP++      ++    T   +GKG        LP     SVRK  
Sbjct: 144 LVAKTGMRFSEALALTPKDFDFAHQVLSVNKTWDYKGKGG------FLPTKNKSSVRKIQ 197

Query: 211 LEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +++  +  F      L    P+F  ++G+  N  V     R   +   +P   T H LRH
Sbjct: 198 IDWQTVIRFSELIKGLPENEPIF--VKGQVYNSTVNTVLSRCCHK-AKVP-EITVHGLRH 253

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           + A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 254 THASLLLFAGVSIASVARRLGHASMTTTQ 282


>gi|260909619|ref|ZP_05916318.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260636262|gb|EEX54253.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 417

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 28/183 (15%)

Query: 162 LLYGC--GLRISEALSLT---PQNIMDDQSTLRIQGKGDKIR-IVPLLPSVRKAIL---- 211
            ++ C  GL +++   L     Q  +D Q  +R + +  K+  IVPL P V + I+    
Sbjct: 242 FIFACFTGLAVADMEHLQYGHIQTAVDGQKYIRKERQKTKVEFIVPLHP-VAEVIINHCR 300

Query: 212 -------EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
                  E   +  +  +L  Q    R + GK L+          + +  G+    + H 
Sbjct: 301 NEQKRNEEQQTMKEYGDSLVFQPDSSRSVMGKNLSI---------VGKACGIRQRLSYHI 351

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGDWMMEIYDQTHPSITQ 323
            RH+F T  LS G  + SI  ++GH  +S+TQ+Y  V ++K   D  M I  Q+   + +
Sbjct: 352 GRHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDNKISEDMDMLIAKQSEKEMAE 411

Query: 324 KDK 326
           +++
Sbjct: 412 REE 414


>gi|224283257|ref|ZP_03646579.1| phage family integrase [Bifidobacterium bifidum NCIMB 41171]
 gi|313140403|ref|ZP_07802596.1| phage family integrase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132913|gb|EFR50530.1| phage family integrase [Bifidobacterium bifidum NCIMB 41171]
          Length = 309

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 12/146 (8%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY 213
           ++ L+   GLR SEAL LTP +      TL +    D       +P     SVRK  L++
Sbjct: 142 LILLVAKTGLRFSEALGLTPDDFDFVHQTLSVSKTWDYKNGGGFVPTKNASSVRKVQLDW 201

Query: 214 ---YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
                L     ++    P+F  + GK  N        R   R   +P+  + H LRH+ A
Sbjct: 202 QLIMQLSTLLKDMPAGDPIF--VNGKVYNSTANNILARHCER-ANVPV-ISIHGLRHTHA 257

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQ 296
           + LL  G  + S+   LGH  ++TTQ
Sbjct: 258 SLLLFAGVSIASVSKRLGHASMNTTQ 283


>gi|258647348|ref|ZP_05734817.1| integrase [Prevotella tannerae ATCC 51259]
 gi|260852873|gb|EEX72742.1| integrase [Prevotella tannerae ATCC 51259]
          Length = 409

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 82/186 (44%), Gaps = 26/186 (13%)

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMD 183
           P+AL+ +    + D V+    H +  I AR+    + L+ C  G   ++A+S+T  N+  
Sbjct: 223 PKALSRESFEKIRDLVI--PEHRSSHILARD----FFLFACYTGTAYADAVSVTRDNLFT 276

Query: 184 DQST---LRIQGKGDKIR-IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           D +    L+ + K +++   V LLP     I +Y D     L   +  P  R        
Sbjct: 277 DDNGGLWLKYRRKKNELHACVKLLPEALALIEKYRDDDRQTLFPMLHYPNMR-------- 328

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIY 298
                R ++ L     +    T H  RHSFA+ + L  G  + +I  +LGH  L TTQ+Y
Sbjct: 329 -----RLMKCLAVLADIKEDLTYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQVY 383

Query: 299 TNVNSK 304
             V  K
Sbjct: 384 AKVTPK 389


>gi|300727313|ref|ZP_07060727.1| mobilizable transposon, int protein [Prevotella bryantii B14]
 gi|299775357|gb|EFI71953.1| mobilizable transposon, int protein [Prevotella bryantii B14]
          Length = 365

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 29/147 (19%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           GLR S+ L+L  +NI  D        +G K  I   +   R  I            L + 
Sbjct: 229 GLRRSDILALRWENIHHD--------RGRKAYIRFRIKKTRTLI-----------QLPLS 269

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL---------STTAHTLRHSFATHLLSNG 277
           LP  R + G P + G     I +    + +P            T H  RH+FA  LL  G
Sbjct: 270 LPAIR-VLGDPKSEGKIFPMITESILTIHIPRWVSKARIRKHITFHCFRHTFAMQLLDKG 328

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSK 304
            D+ +I ++LGH ++S+TQ Y  ++SK
Sbjct: 329 VDIYTIAALLGHKQVSSTQNYAKMSSK 355


>gi|319902259|ref|YP_004161987.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319417290|gb|ADV44401.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 388

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 4/82 (4%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LFR ++       V  R ++ + + LG+    +A T RH+FAT  L    DL S+Q +LG
Sbjct: 303 LFRNVQCD----QVVNRQLKAIAKELGINKKISAKTGRHTFATIYLRKTKDLSSLQKLLG 358

Query: 289 HFRLSTTQIYTNVNSKNGGDWM 310
           H  +  T IY +V  ++  + M
Sbjct: 359 HSNIRETMIYAHVMDESKREGM 380


>gi|182420352|ref|ZP_02951578.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum 5521]
 gi|237668584|ref|ZP_04528568.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182375796|gb|EDT73391.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum 5521]
 gi|237656932|gb|EEP54488.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 333

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 69/156 (44%), Gaps = 9/156 (5%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           +  +   +  LL     RISE   +  ++I   + ++ + GKG+K R+V      +  + 
Sbjct: 175 VTEKQKCLFELLDSTACRISEIDEIKIEDINWQEQSIIVTGKGNKQRVVYFSTKAKLHLK 234

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV--FQRYIRQLRRYLGLPLSTTAHTLRHSF 269
            Y       +    +  +F   +    + GV   Q  + +++   G+      H  R + 
Sbjct: 235 AY-------ITGREEGHVFVSDKAPHQHIGVRALQLIVAKIKEKAGVTEKVHCHKFRRTQ 287

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           AT+LL++G  ++ +Q ILGH     TQ Y  ++ +N
Sbjct: 288 ATYLLNSGMTIQGVQKILGHTSPDVTQRYAQLSQEN 323


>gi|13475333|ref|NP_106897.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14026085|dbj|BAB52683.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 284

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 85/201 (42%), Gaps = 17/201 (8%)

Query: 19  QNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           + W  + L   RG+S  T+ SY    R    F         +  T+R L    I AF+  
Sbjct: 12  ERWFTDRLMRHRGVSSNTIASYRDTFRLLFAFAQTRLGRSPSQLTLRDLDAPFIGAFLED 71

Query: 78  R---RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
               R+  +  R+L+  L+ I+SF +Y    +    + I      ++  ++P    +K+ 
Sbjct: 72  LETLRSASVRTRNLR--LTAIRSFFRYASFEEPAHSAQI------QRVLAIPSKRCDKRQ 123

Query: 135 LTLVD----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLR 189
           L  +       +L     + W+  R+  +L L    GLR+SE + L   ++M    + +R
Sbjct: 124 LQFLTRPEIEAILACPDRSTWLGRRDHTLLLLAAQTGLRVSEIIDLDRDSVMLGHGAHVR 183

Query: 190 IQGKGDKIRIVPLLPSVRKAI 210
             GKG   R  PL    ++A+
Sbjct: 184 CVGKGRNERSTPLTKVAQQAL 204


>gi|213971608|ref|ZP_03399717.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato T1]
 gi|301382010|ref|ZP_07230428.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. tomato Max13]
 gi|302058347|ref|ZP_07249888.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. tomato K40]
 gi|302131112|ref|ZP_07257102.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213923637|gb|EEB57223.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato T1]
          Length = 321

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 111/246 (45%), Gaps = 16/246 (6%)

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            + A ++  R       +    ++ I+  +    +  + +   +L +R++K  +    A 
Sbjct: 71  HVTALVATLREDDYAPNTTSLYVNAIRGVMNEAWRHDLISHDQLLKIRSIKPVSGTRLAK 130

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
                 TL+  ++   + + +    R++AI+ +LYG G+R SE+++L    I   + +LR
Sbjct: 131 GRNIRRTLIRELMEACAADPRPQGRRDAAIIAILYGSGMRKSESVNLDLAQIDFAERSLR 190

Query: 190 IQGKGDKIRIVPLLPS-VRKAILEYYDL---CPFDLNLNIQLPLFRGI-RGKPLNPGVFQ 244
           + GKG+K +++   P    KA+ ++ +L   C         L LF  I RG  +      
Sbjct: 191 VMGKGNK-QLIKYAPEWAFKALNDWLELRRSC-LQPGQGDDLFLFNRIRRGSHITRDRIT 248

Query: 245 RY-----IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           ++      +Q  R +G+ +    H  R SF T ++    DL   Q +  H  +STT  Y 
Sbjct: 249 KHAIYFIAKQRGRQVGVDI--MPHDFRRSFITRVIEE-FDLSIAQKLAHHTHISTTASY- 304

Query: 300 NVNSKN 305
           ++ S+N
Sbjct: 305 DMRSEN 310


>gi|167756396|ref|ZP_02428523.1| hypothetical protein CLORAM_01929 [Clostridium ramosum DSM 1402]
 gi|167703804|gb|EDS18383.1| hypothetical protein CLORAM_01929 [Clostridium ramosum DSM 1402]
          Length = 286

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 104/244 (42%), Gaps = 39/244 (15%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS------NSLPRALNE--------- 131
           ++ + +  I+ F +Y  K+++T E   L    L KS      NS+  ALN+         
Sbjct: 27  TITKYIRDIEKFYQYADKKEVTKELVKLYKEELMKSYKPTSINSMLAALNQFFEYNGWLE 86

Query: 132 --KQALTLVDNVLLHTSHE-------------TKWIDARNSAILYLLYGCGLRISEALSL 176
              + L +   V L  S E              K  + R   +L  +   G+R+SE   +
Sbjct: 87  CKIKELKIQKRVFLEESKELSKDEYKRLVNAARKQKNERLYVLLQAICSTGIRVSEHRYI 146

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
           T Q + D  +  +I  KG K+R +     +++ +L+Y   C  +   N  + + R   G+
Sbjct: 147 TVQALKDGYA--QIYNKG-KVREIFFSDDLKRILLKY---CHKNKIENGAIFVTRS--GR 198

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           PL+     + ++ L     +  S    H LRH FA    +   D+  +  +LGH  + TT
Sbjct: 199 PLDRSNIWKAMKDLCDDAKVERSKVYPHNLRHLFAVTYYNLKKDIARLADLLGHSSMDTT 258

Query: 296 QIYT 299
           +IYT
Sbjct: 259 RIYT 262


>gi|329723861|gb|EGG60388.1| site-specific recombinase, phage integrase family [Staphylococcus
           epidermidis VCU144]
          Length = 405

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 86/211 (40%), Gaps = 32/211 (15%)

Query: 132 KQALTLVDNVLLHTSHETKWIDARN----SAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           K+ L+  D ++ H  H T+    RN     AI+      G RI E L++   NI  +  T
Sbjct: 193 KELLSCFDYLIKHKKHSTR---KRNYKMVKAIVQFQIANGTRIGELLAIKSDNINYEDKT 249

Query: 188 LRIQGK----GDK----------------IRIVPLLPS----VRKAILEYYDLCPFDLNL 223
           L I G      DK                 R + L       ++  IL+      ++ + 
Sbjct: 250 LDIDGTINWVTDKETGTFGVKETTKTSKSYRTIGLTTQSINLLKTLILDNKKENQWNEDF 309

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             +  +F    G P++       I++      +    T HTLRH+  + L   G +L++I
Sbjct: 310 IDRSYIFTNTAGSPIDLNKINNIIKEATDISSIKKRVTTHTLRHTHISTLAQLGINLKAI 369

Query: 284 QSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           Q  +GH    TT +IYT+V  +   + M ++
Sbjct: 370 QERVGHSDYKTTLEIYTHVTDQMAKNMMKKL 400


>gi|307564494|ref|ZP_07627035.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307346854|gb|EFN92150.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 409

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYT 299
             +Q Y++ LR   G+    T HT RH+FAT + L  G  + ++  +LGH  +S T+ Y 
Sbjct: 325 ATYQSYLKALRLRAGISFPFTTHTARHTFATFITLEQGVPIETVSKMLGHSNVSMTERYA 384

Query: 300 NVN 302
            V 
Sbjct: 385 KVT 387


>gi|114567760|ref|YP_754914.1| phage integrase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338695|gb|ABI69543.1| phage integrase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 305

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 96/225 (42%), Gaps = 51/225 (22%)

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLY----GCGLR 169
           L +RN+ ++   PR   EK+ + ++      T  +T+     N+  L   +    G G+R
Sbjct: 67  LVVRNVSEATKRPR--REKKEMRVL------TEEQTRLQAVLNTERLGTAFLVDLGTGMR 118

Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRI----------------------VPLLPSVR 207
             E L+L  +N+  ++  +R+Q    +IR+                      +P+  SV 
Sbjct: 119 CGELLALKWENVDLNEGVIRVQQSLTRIRVEDSSLKTELRFQPLKTVKSRRSIPIPQSVI 178

Query: 208 KAILEY----------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
            A+  +                DL L     +F    G+P++P    R   +L    G+P
Sbjct: 179 AALKSHKSRQNQEKLKAGAAYNDLGL-----VFCTELGQPIDPRNLTRTFNRLLERAGIP 233

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
              T H++RHS+AT LL      + +Q ++GH ++S T   Y++V
Sbjct: 234 -KATLHSMRHSYATRLLEMNEHPKVVQELMGHSQISMTLDTYSHV 277


>gi|295108411|emb|CBL22364.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 426

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 92/210 (43%), Gaps = 54/210 (25%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---------------GKGDK-IRIVPL 202
           ++Y+L+  G+RISE   LT ++I  ++ T+ I                 K D   R++P+
Sbjct: 220 VVYILFHTGMRISEFCGLTLKDIDLEKMTVNIDHQLQRTSDMRYIIETTKTDAGTRVLPI 279

Query: 203 ----------------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ-R 245
                            P V KAI  Y     +D N            G PL    +Q R
Sbjct: 280 TEDVAQMFQAIIEDRNAPKVEKAIDGYSGFLFYDDN------------GMPLVAMHWQHR 327

Query: 246 YIRQLRRY-----LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYT 299
           +   + RY     + +P + T H  RH++ +++  +G + +++Q ++GH  +S T  +YT
Sbjct: 328 FNHMVGRYNDIYRVQMP-NITPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNVYT 386

Query: 300 NVNSKNGGDWM--MEIYDQTHPSITQKDKK 327
           ++   +  + +  ME + +    + QK +K
Sbjct: 387 HIGFDDAEEELKRMEEFRKAQAEVEQKKEK 416


>gi|218263385|ref|ZP_03477505.1| hypothetical protein PRABACTJOHN_03191 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222765|gb|EEC95415.1| hypothetical protein PRABACTJOHN_03191 [Parabacteroides johnsonii
           DSM 18315]
          Length = 425

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 108/250 (43%), Gaps = 31/250 (12%)

Query: 61  QTIRQL-SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           Q IR+  SY E++   S        +++ +  L+ +K   +   K   +   + L+ +  
Sbjct: 181 QFIREYQSYIEVKCGYS--------NQTSRHHLALLKRICRIAYKEGFSERYHFLHFKIP 232

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K+  + P+AL+ +    L D   L    + + +       L+  Y  G   ++ +S+T +
Sbjct: 233 KQKETTPKALSREDFEKLRD---LDIPEKRRSLVLTRDLFLFACYA-GTAYADTISITRE 288

Query: 180 NI-MDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           N+  DD+ +L ++ +  K  +   V LLP     I +Y D     L  N    L+  +R 
Sbjct: 289 NLYTDDEGSLWLKYRRKKNELKARVKLLPEAIALIEKYRDNSRETLFPN---QLYSTLRA 345

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLST 294
                      ++ LR   GL      H  RHSFA+ + L  G  + +I  +LGH  + T
Sbjct: 346 N----------MKILRVLAGLTTELVYHMGRHSFASLVTLEEGVPIETISKMLGHNNIKT 395

Query: 295 TQIYTNVNSK 304
           TQIY  V  K
Sbjct: 396 TQIYARVTPK 405


>gi|160937813|ref|ZP_02085172.1| hypothetical protein CLOBOL_02705 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439252|gb|EDP17005.1| hypothetical protein CLOBOL_02705 [Clostridium bolteae ATCC
           BAA-613]
          Length = 316

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 10/142 (7%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           ++  L   G R+SE + +  +++      + +  KG K+R +     +   +L + D   
Sbjct: 165 VVRFLGATGARVSELIQIKAEHMQ--IGCMDLYSKGGKVRRIYFPEKLCGEMLSWLD--- 219

Query: 219 FDLNLNIQLP-LFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
              +  IQ   +F   RG P+ P G+  +     ++Y   P +   H+ RH FA + L+ 
Sbjct: 220 ---SRQIQTGFIFTNRRGNPITPRGISSQLKVLAKKYRICPDTVYPHSFRHRFAKNFLTK 276

Query: 277 GGDLRSIQSILGHFRLSTTQIY 298
             D+  +  ++GH  + TT+IY
Sbjct: 277 FNDISLLADLMGHESIETTRIY 298


>gi|312278360|gb|ADQ63017.1| Tyrosine recombinase xerS [Streptococcus thermophilus ND03]
          Length = 356

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 115/284 (40%), Gaps = 45/284 (15%)

Query: 58  ITIQTIRQLSYTEIRAFI----------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI 107
           I I+T+  L+  ++ +F+          +  + Q +   ++ R+LS + S  KYL +   
Sbjct: 66  IHIKTLENLTKKDMESFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVE 125

Query: 108 TTESNILNMRNLKKSNSL--------PRALNEKQALTLVDNVL-----LHTSHETKWID- 153
             +      RN+ K  S          RA N KQ L L D  +     +   +E K  + 
Sbjct: 126 GPDGEPYFYRNVMKKISTKKKKETLAARAENIKQKLFLGDETMKFLDYVENEYEVKLSNR 185

Query: 154 ---------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
                     R+ AI+ LL   G+R+SEA++L  ++I      + +  KG +   V +  
Sbjct: 186 AKSSFYKNKERDLAIIALLLSSGVRLSEAVNLDLKDINLKMMVIDVTRKGGQRDSVNMAS 245

Query: 205 SVRKAILEY-------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
             R  +  Y       Y     D+ L   L  +RG+  + ++    ++ + +  +     
Sbjct: 246 FARPYLENYLSIRNKRYKAEKQDVALF--LTEYRGVPNR-IDASSIEKMVAKYSQ--DFK 300

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T H LRH+ AT L         +   LGH     T +YT++
Sbjct: 301 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHI 344


>gi|312872206|ref|ZP_07732279.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2062A-h1]
 gi|311092290|gb|EFQ50661.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2062A-h1]
          Length = 329

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 52/251 (20%), Positives = 107/251 (42%), Gaps = 25/251 (9%)

Query: 61  QTIRQLSYTEIRAFISK----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           + +R++   ++R ++++    + + K+   +++R LS   SF  +L+      +S    +
Sbjct: 88  KNVREMETDDLRTYLTEYQHEKNSSKVTVDNIRRILS---SFFSWLEDENYILKSPARRI 144

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             +K + ++     ++    + D+            + R+ A++ +L   G+R+ E + L
Sbjct: 145 HKVKAALTIKETYTDEALEKMRDSCE----------EPRDLALIDILASTGMRVGELVLL 194

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG- 235
              +I  ++    + GKG K R+V      +  +L Y      D        LF  +R  
Sbjct: 195 NRDDINFEERECVVFGKGSKERMVYFDARTKIHLLTYLQGRTDD-----NPALFVSLRAP 249

Query: 236 -KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            + L  G  +  +R+L   L +      H  R + AT  +  G  +  +Q +LGH R+ T
Sbjct: 250 HERLKIGGVECRLRELGNKLDIE-KVHPHKFRRTLATMAIDKGMPIEQLQQLLGHKRIDT 308

Query: 295 TQIYTNVNSKN 305
           T  Y  V   N
Sbjct: 309 TLQYAMVKQSN 319


>gi|288927978|ref|ZP_06421825.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330812|gb|EFC69396.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 431

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 23/162 (14%)

Query: 158 AILYLLYGC--GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVRKAIL 211
           A L  ++ C  G+ I++   L  ++I    D Q  +R + +  K+  +VPL P + +AI+
Sbjct: 238 ARLMFVFACFTGMAIADMERLQYKHIQTSADGQRYIRKERQKTKVEFVVPLHP-IAEAII 296

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ---------LRRYLGLPLSTTA 262
            +   C  +   N +    +  +G  L   VF R   +         + +  G+    + 
Sbjct: 297 NH---CRKEQENNEEWQTVKE-KGDSL---VFHRGCSRSVMGKNLCIVGKACGISQRLSY 349

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           H  RH+F T  LS G  + SI  ++GH  +S+TQIY  V  +
Sbjct: 350 HMARHTFGTMCLSAGIPIESIAKMMGHASISSTQIYAQVTDR 391


>gi|282164838|ref|YP_003357223.1| putative site-specific recombinase [Methanocella paludicola SANAE]
 gi|282157152|dbj|BAI62240.1| putative site-specific recombinase [Methanocella paludicola SANAE]
          Length = 324

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 15/163 (9%)

Query: 153 DARNSAILYLLYGCGLRISEA--LSLTPQNIMDDQSTLRIQGKGD----KIRIVPLLPSV 206
           + R+SAI+ LLY   LR SE   L +   ++ +   T+   GK      ++R + +    
Sbjct: 152 NCRDSAIISLLYFAALRNSEVCHLEVGDYDLENHFVTIHEHGKWHPKSYQVRKLYVPKEC 211

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              IL +Y +   + N+  +  LF    G P N    +  I  +RR     L T  H LR
Sbjct: 212 HAKILAWYKVREQE-NITSK-TLFLTSNGVPFNDLSLRNVI--VRRAKDAGLKTYPHKLR 267

Query: 267 HSFATHLLS--NGGDLRSI---QSILGHFRLSTTQIYTNVNSK 304
           HS ATHL +  NG    +I      LGH  +STT IY + + +
Sbjct: 268 HSRATHLANGINGNKPWAIGVLSKYLGHSSISTTAIYVHTSDE 310


>gi|154505301|ref|ZP_02042039.1| hypothetical protein RUMGNA_02815 [Ruminococcus gnavus ATCC 29149]
 gi|153794344|gb|EDN76764.1| hypothetical protein RUMGNA_02815 [Ruminococcus gnavus ATCC 29149]
          Length = 405

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 2/75 (2%)

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           PL R   G+ + P + Q   R +   L LP     H+LRH+ A+ LL+ G D++ +Q  L
Sbjct: 316 PLNRYQDGRYIQPRIMQHCGRIVHYQLDLP-DWDFHSLRHTHASILLAAGADIKYVQDRL 374

Query: 288 GHFRLSTT-QIYTNV 301
           GH  + TT  +Y++V
Sbjct: 375 GHKNIETTLNVYSHV 389


>gi|150008058|ref|YP_001302801.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149936482|gb|ABR43179.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 311

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 33/56 (58%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           F R ++ L R  G+ L  T++T+RHSFA+ L      +  I  +LGH  + TTQIY
Sbjct: 228 FNRDLKLLARSTGVTLPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIY 283


>gi|77408588|ref|ZP_00785323.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae COH1]
 gi|77172781|gb|EAO75915.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae COH1]
          Length = 356

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 62/287 (21%), Positives = 115/287 (40%), Gaps = 49/287 (17%)

Query: 57  KITIQTIRQLSYTEIRAFI----------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK 106
           +I +  +  L+  ++ AFI          +  R   +   ++ R+LS + S  KYL +  
Sbjct: 65  EIELSVLENLTKKDMEAFILYLRERPLLNANTRQNGVSQTTINRTLSALSSLFKYLTEEV 124

Query: 107 ITTESNILNMRNLKKSNSL--------PRALNEKQALTLVDNVLLHTSHETKWIDA---- 154
              +      RN+ K  S          RA N KQ L L +     T    ++ID     
Sbjct: 125 ENADGEPYFYRNVMKKVSTKKKKETLASRAENIKQKLFLGN----ETIEFLEYIDCEYQN 180

Query: 155 ---------------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                          R+ AI+ LL   G+R+SEA++L  ++I  +   + +  KG K   
Sbjct: 181 KLSKRALAFFNKNKERDLAIIALLLASGVRLSEAVNLDLKDINLNVMVIDVTRKGGKRDS 240

Query: 200 VPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           V +    +  +  Y D+        + ++ + L  +RG+  + ++    ++ + +  +  
Sbjct: 241 VNVASFAKPYLANYLDIRKNRYKAENQDIALFLSEYRGVPNR-IDSSSVEKMVAKYSQ-- 297

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              +  T H LRH+ AT L         +   LGH     T +YT++
Sbjct: 298 DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHI 344


>gi|332884811|gb|EGK05066.1| hypothetical protein HMPREF9456_02979 [Dysgonomonas mossii DSM
           22836]
          Length = 121

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
           PLF   R + L+ G     +R+    +    +P   T H LRHS A HLL  G  +  I+
Sbjct: 7   PLFYNQRRQALSRGGITHILRKYAHMVKDKNMPEKITPHILRHSKAMHLLQAGYTMVVIR 66

Query: 285 SILGHFRLSTTQIYTNVN 302
             LGH  + TT+IY  ++
Sbjct: 67  DWLGHVSVQTTEIYATLD 84


>gi|260593191|ref|ZP_05858649.1| integrase [Prevotella veroralis F0319]
 gi|260534899|gb|EEX17516.1| integrase [Prevotella veroralis F0319]
          Length = 409

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 87/195 (44%), Gaps = 36/195 (18%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLT 177
           K  N LP+AL+ ++AL  +  VL     E +   AR+      L+ C  G    + + L+
Sbjct: 217 KGDNKLPKALD-REALDKL-KVLRFEDLEEEMETARD----IFLFACYVGAAYCDLMELS 270

Query: 178 PQNIM-DDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD-----LCPFDLNLNIQLP 228
             +++ DD+ +L ++    K  +   V LLP   + I  ++      L PF         
Sbjct: 271 KSHLVRDDEGSLWLKFNRQKTGVLCRVKLLPEAIRLIERFHSDERETLLPF--------- 321

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSIL 287
               I+ K      +Q  ++ LR   G+    T HT RH+FAT + L  G  + ++  +L
Sbjct: 322 ----IKYKN-----YQSCLKALRLRAGISFPFTTHTARHTFATLITLEQGVPIETVSKML 372

Query: 288 GHFRLSTTQIYTNVN 302
           GH  +S T+ Y  V 
Sbjct: 373 GHSNISMTERYAKVT 387


>gi|255034688|ref|YP_003085309.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254947444|gb|ACT92144.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 436

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 61/293 (20%), Positives = 118/293 (40%), Gaps = 33/293 (11%)

Query: 24  NLEIERGL-SKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
            L +ERG+ S  TL+ +    R    F+ F Y    +    +  L   E+  +++  + +
Sbjct: 135 ELMVERGMRSDNTLRHWRKLKRHVTAFIKFQYKASDLNFSELSGLFAEELYEYLTLHKPK 194

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS----LPRALNEKQALTL 137
            + + S ++ +   +  +K   K+   T +    M   K S      +P    +      
Sbjct: 195 PLAEVSARKDVKWTRQIVKIGVKKDFITRNP---MEGFKCSGGDVEVIPLEFEQ------ 245

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL---SLTPQNIMDDQSTLRIQGKG 194
           V+ +     H  + ++ R++ I     G   +    L   S+T      ++  +R +GK 
Sbjct: 246 VERIHRKKLHVERLVEVRDAFIFQCFTGFAYQDIYGLTRDSITLVGPKRERWLVRKRGKT 305

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL---- 250
               +VP+LP V + +++ Y   P+ +  +  +P+    R        +  Y+++L    
Sbjct: 306 QVGEMVPILPIVEE-LIQKYKSHPYCVAHDKLIPVNSNFR--------YNTYLKELADIC 356

Query: 251 --RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             R   G       H  RH FA  +L+NG  L  +  +LGH  + TT  Y  V
Sbjct: 357 DIRDITGSIRKLDTHDARHFFADMMLNNGVPLEDVSKMLGHRNIRTTMRYCRV 409


>gi|218263387|ref|ZP_03477507.1| hypothetical protein PRABACTJOHN_03193 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222767|gb|EEC95417.1| hypothetical protein PRABACTJOHN_03193 [Parabacteroides johnsonii
           DSM 18315]
          Length = 226

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 18/140 (12%)

Query: 167 GLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPFDLN 222
           GL  ++  +L P++I    +  L I+   +K  +   VPL P+ R+ ILE Y+       
Sbjct: 74  GLAYADVYNLYPRHIGKTSEGRLYIRKPREKTEVETFVPLHPAARR-ILELYN------T 126

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRY-IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
            +   P+F      PL       Y I  L   LG+  + + H  RH+F T L+S G  + 
Sbjct: 127 TDDTRPVF------PLPKRDILWYDIHGLGVMLGIKKNLSHHAARHTFGTFLVSEGISIE 180

Query: 282 SIQSILGHFRLSTTQIYTNV 301
           S   ++GH  +++TQIY  +
Sbjct: 181 SAAKMMGHADINSTQIYAQI 200


>gi|206580032|ref|YP_002237617.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
 gi|206569090|gb|ACI10866.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
          Length = 315

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 104/225 (46%), Gaps = 17/225 (7%)

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALTLVDNV-L 142
           +SL+     +++F +Y  +  +  E  +  +R+ +    +S+P      +    VD + L
Sbjct: 88  KSLQHVTHCLRAFFRYGARNGLCREGLVDCLRSTRVYSLDSVP------EGPAWVDVLRL 141

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVP 201
           L  +   K  D R +AIL LL   GLR +E  +L   +   ++  L I   K  + RI P
Sbjct: 142 LRDAEGDKPSDIRATAILMLLAIYGLRPAEVKALQLSDFDWERELLTIDCTKTRRKRIFP 201

Query: 202 LLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLS 259
           L   V +A+L Y  D+ P   + ++ L L+     +P+   ++     +L++  + LP  
Sbjct: 202 LSRPVGEAVLRYLKDVRPPSPHRHVFLTLYGA---RPVR-DIYMLVSGRLKKLNVSLP-Q 256

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
                LRH+ AT L+  G  L  I   LGH     T+IY  V+ K
Sbjct: 257 YGPRGLRHACATRLMEAGIPLAQIGMHLGHTDADATRIYAKVDMK 301


>gi|22537138|ref|NP_687989.1| site-specific tyrosine recombinase XerS [Streptococcus agalactiae
           2603V/R]
 gi|25011018|ref|NP_735413.1| site-specific tyrosine recombinase XerS [Streptococcus agalactiae
           NEM316]
 gi|76788700|ref|YP_329694.1| site-specific tyrosine recombinase XerS [Streptococcus agalactiae
           A909]
 gi|76797778|ref|ZP_00780044.1| Tyrosine recombinase xerC [Streptococcus agalactiae 18RS21]
 gi|77405708|ref|ZP_00782795.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae H36B]
 gi|77413630|ref|ZP_00789816.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 515]
 gi|54039883|sp|P67633|XERS_STRA5 RecName: Full=Tyrosine recombinase xerS
 gi|54042780|sp|P67632|XERS_STRA3 RecName: Full=Tyrosine recombinase xerS
 gi|123601858|sp|Q3K1A9|XERS_STRA1 RecName: Full=Tyrosine recombinase xerS
 gi|22534000|gb|AAM99861.1|AE014236_15 site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 2603V/R]
 gi|23095418|emb|CAD46624.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563757|gb|ABA46341.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae A909]
 gi|76586854|gb|EAO63346.1| Tyrosine recombinase xerC [Streptococcus agalactiae 18RS21]
 gi|77160339|gb|EAO71464.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 515]
 gi|77175704|gb|EAO78486.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae H36B]
          Length = 356

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 62/287 (21%), Positives = 115/287 (40%), Gaps = 49/287 (17%)

Query: 57  KITIQTIRQLSYTEIRAFI----------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK 106
           +I +  +  L+  ++ AFI          +  R   +   ++ R+LS + S  KYL +  
Sbjct: 65  EIELSVLENLTKKDMEAFILYLRERPLLNANTRQNGVSQTTINRTLSALSSLFKYLTEEV 124

Query: 107 ITTESNILNMRNLKKSNSL--------PRALNEKQALTLVDNVLLHTSHETKWIDA---- 154
              +      RN+ K  S          RA N KQ L L +     T    ++ID     
Sbjct: 125 ENADGEPYFYRNVMKKVSTKKKKETLASRAENIKQKLFLGN----ETIEFLEYIDCEYQN 180

Query: 155 ---------------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                          R+ AI+ LL   G+R+SEA++L  ++I  +   + +  KG K   
Sbjct: 181 KLSKRALAFFNKNKERDLAIIALLLASGVRLSEAVNLDLKDINLNVMVIDVTRKGGKRDS 240

Query: 200 VPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           V +    +  +  Y D+        + ++ + L  +RG+  + ++    ++ + +  +  
Sbjct: 241 VNVASFAKPYLANYLDIRKNRYKAENQDIALFLSEYRGVPNR-IDASSVEKMVAKYSQ-- 297

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              +  T H LRH+ AT L         +   LGH     T +YT++
Sbjct: 298 DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHI 344


>gi|257879457|ref|ZP_05659110.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|323142582|ref|ZP_08077398.1| site-specific recombinase, phage integrase family
           [Phascolarctobacterium sp. YIT 12067]
 gi|257813685|gb|EEV42443.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|322413015|gb|EFY03918.1| site-specific recombinase, phage integrase family
           [Phascolarctobacterium sp. YIT 12067]
          Length = 457

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 8/84 (9%)

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS-NGG 278
           D NL     +F    GKP+   V  R   +L    GLP     H+LRHS  T+ L  NGG
Sbjct: 318 DFNL-----VFCSSNGKPIEGQVINRAFNKLIEEKGLP-KVVFHSLRHSSITYKLKLNGG 371

Query: 279 DLRSIQSILGHFRLS-TTQIYTNV 301
           D++S+Q   GH ++     +Y+++
Sbjct: 372 DMKSVQGDSGHAQVKMVADVYSHI 395


>gi|220931210|ref|YP_002508118.1| phage integrase family protein [Halothermothrix orenii H 168]
 gi|219992520|gb|ACL69123.1| phage integrase family protein [Halothermothrix orenii H 168]
          Length = 391

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 91/223 (40%), Gaps = 51/223 (22%)

Query: 117 RNLKKSNSLPRALNEKQALTLVD---NVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
           RN+ K+  +P+   EK+  T      N+ L  + + K+       + YL    G+R  E 
Sbjct: 164 RNICKAVEVPKKQEEKKLHTWNKKQVNIFLKAARDYKYF-----ILHYLALNTGMRRGEL 218

Query: 174 LSLTPQNIMDDQSTLRIQGKGD-----------KI------RIVPLLPSV---------- 206
           L L  ++I  D    RI+ K             K+      R +P+  +V          
Sbjct: 219 LGLQWKDI--DMEKKRIEVKRQLARTDEGLIFKKVKTKSGNRTIPITDNVVRELKRHQIK 276

Query: 207 ----RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
               R A+ E Y       N    L    GI G P++P    R  + +    GLP     
Sbjct: 277 QGEKRLALGEAY-------NKKADLVASNGI-GNPIDPRNLVRDFKDIIEETGLP-EIRY 327

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
           H LRH+FAT  L   G ++++Q ILGH  ++ T   Y++V  +
Sbjct: 328 HDLRHTFATLFLEAKGPIKTLQQILGHSSITVTIDTYSHVTEE 370


>gi|167039091|ref|YP_001662076.1| phage integrase family protein [Thermoanaerobacter sp. X514]
 gi|166853331|gb|ABY91740.1| phage integrase family protein [Thermoanaerobacter sp. X514]
          Length = 132

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LF   +G  ++P  F     +LR   GL      H LR++FA  LL  G  L+ +Q + G
Sbjct: 48  LFYTRKGTYIHPRAFNSKYYKLREKAGLEKDKNLHALRYTFAARLLEAGVQLKVVQKLFG 107

Query: 289 HFRLSTTQ-IYTNV 301
           H ++STT  IY++V
Sbjct: 108 HTQISTTADIYSHV 121


>gi|119715851|ref|YP_922816.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119536512|gb|ABL81129.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 368

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 5/82 (6%)

Query: 229 LFRGIRGKPLNPGVFQ-RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           LF    G P++   F+ R      R  G+      H LRH+ A+ LL+ G DL+S+   +
Sbjct: 277 LFATREGTPISRNTFRTRVWLPAIRASGVDFDVRVHDLRHAHASWLLAGGSDLKSVMDRM 336

Query: 288 GHFRLSTTQIY----TNVNSKN 305
           GH +++TTQ Y     + ++KN
Sbjct: 337 GHAQITTTQKYLHALPDADAKN 358


>gi|308174996|ref|YP_003921701.1| Tyrosine recombinase xerC [Bacillus amyloliquefaciens DSM 7]
 gi|307607860|emb|CBI44231.1| Tyrosine recombinase xerC [Bacillus amyloliquefaciens DSM 7]
          Length = 385

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 35/181 (19%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-----------------QGKGD------KIR 198
           L+   GLRI EAL+LT  +I  ++ T+++                 + K         I 
Sbjct: 206 LMARTGLRIGEALALTWNDIDFEEGTIKVSKTLVYPTNSTPYLSTPKSKAGLRIIKLDIH 265

Query: 199 IVPLLPSVR----KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            + LL   R    + +L+Y +      ++     +F    G+ L   V + Y +++ +  
Sbjct: 266 TIQLLKKHRINRNEVVLKYKNYKKPGADI-----VFYQHDGRWLRTNVVREYFKEICKRA 320

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDWMMEI 313
            LP+  + H LRHS A HL+    DL+ +   LGH  +  T   Y +V  K   D  +E+
Sbjct: 321 ELPI-LSPHALRHSHAVHLIEAKADLKFVSERLGHSSIKITADTYLHVTKKIEND-ALEM 378

Query: 314 Y 314
           Y
Sbjct: 379 Y 379


>gi|163801694|ref|ZP_02195592.1| Integrase [Vibrio sp. AND4]
 gi|159174611|gb|EDP59413.1| Integrase [Vibrio sp. AND4]
          Length = 343

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 6/71 (8%)

Query: 236 KPLNPGVFQR------YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           KP +  +F+       YI + +  + LP    +H LRHSFA+H + NG ++  ++ ILGH
Sbjct: 255 KPTSEKLFEECYTPFCYILKNKLGITLPSGQASHVLRHSFASHFMMNGDNILVLRDILGH 314

Query: 290 FRLSTTQIYTN 300
             +S T  Y +
Sbjct: 315 SDISMTMRYAH 325


>gi|253571058|ref|ZP_04848466.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840007|gb|EES68090.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 407

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 19/147 (12%)

Query: 162 LLYGC--GLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD 215
            L+ C  G+  S+   LT +N+ + +     I+    K  +   +PL+      I +Y D
Sbjct: 249 FLFSCYTGIPYSDMCMLTNENLSLAEDGIWWIRSSRKKTGVDFEIPLMELPLHIIEKYRD 308

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
           + P        LP++               Y++Q+    G+      H  RH++AT + L
Sbjct: 309 VAP----EGKLLPMYSN--------SSLNHYLKQIAVLCGIERKLVFHVARHTYATEITL 356

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301
           S+G  L ++  +LGH R+ TTQ+Y  V
Sbjct: 357 SHGVPLETVSKMLGHSRIGTTQLYAKV 383


>gi|161525449|ref|YP_001580461.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189349815|ref|YP_001945443.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
 gi|160342878|gb|ABX15964.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189333837|dbj|BAG42907.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
          Length = 394

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 129/292 (44%), Gaps = 34/292 (11%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI--- 71
           + E QNWL++    RG+S+ T+ S+     + +  L     +    Q IRQ+   E    
Sbjct: 124 VAEFQNWLRH---HRGVSERTINSHGLLVMRMMPTLGTEPAD-YNAQCIRQVILDEAQKC 179

Query: 72  -RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
            RA+++K RT          +L G   FL    + K   +  +    + + S SLPR L+
Sbjct: 180 SRAYLTKMRT----------ALRGYLRFLIARGECKPWLDQAVPVFAHWQLS-SLPRYLS 228

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           +     ++      T H       R+ AI+ LL   GLR  + L++   +I   Q +LR+
Sbjct: 229 DSDIERVIAACETGTPHGI-----RDKAIILLLARLGLRGGDILTMRLCDIEWAQGSLRV 283

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYD-LCPFD----LNLNIQLPLFRGIRGKPLNPGVFQR 245
           +GKG +   +PL       +L Y D + PF     + L +Q P +R          + QR
Sbjct: 284 RGKGRREVRLPLPQDAGDVLLTYIDQVRPFADSDRMFLRLQAP-YRPFAKSCAVSQIVQR 342

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
            +   R  +    S  A+ LRHS AT LL  G  L ++ S+  +FR+    I
Sbjct: 343 ALE--RAGIADAPSRGANLLRHSAATSLLRAGARLCNLFSV--NFRIGGHDI 390


>gi|15675163|ref|NP_269337.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes M1
           GAS]
 gi|21910375|ref|NP_664643.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes
           MGAS315]
 gi|28895951|ref|NP_802301.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes
           SSI-1]
 gi|56807698|ref|ZP_00365575.1| COG0582: Integrase [Streptococcus pyogenes M49 591]
 gi|306827323|ref|ZP_07460610.1| phage integrase family integrase/recombinase [Streptococcus
           pyogenes ATCC 10782]
 gi|54039884|sp|P67635|XERS_STRP3 RecName: Full=Tyrosine recombinase xerS
 gi|54042781|sp|P67634|XERS_STRP1 RecName: Full=Tyrosine recombinase xerS
 gi|229892119|sp|Q1JBN4|XERS_STRPB RecName: Full=Tyrosine recombinase xerS
 gi|229892122|sp|Q1J6H1|XERS_STRPF RecName: Full=Tyrosine recombinase xerS
 gi|13622326|gb|AAK34058.1| putative integrase/recombinase [Streptococcus pyogenes M1 GAS]
 gi|21904572|gb|AAM79446.1| putative integrase/recombinase (phage integrase family)
           [Streptococcus pyogenes MGAS315]
 gi|28811201|dbj|BAC64134.1| putative integrase/recombinase [Streptococcus pyogenes SSI-1]
 gi|304430470|gb|EFM33492.1| phage integrase family integrase/recombinase [Streptococcus
           pyogenes ATCC 10782]
          Length = 356

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 128/330 (38%), Gaps = 64/330 (19%)

Query: 12  FELLKERQ---NWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           +E LKE +   +WL + ++ +   ++ + L + E  T++ L     Y  E+ ++ T    
Sbjct: 39  YEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLEAFVLYLRERPSLNTYST- 97

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL- 125
                         + +   ++ R+LS + S  KYL +     +      RN+ K  S  
Sbjct: 98  -------------KEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTK 144

Query: 126 -------PRALNEKQALTLVDNVLLHTSHETKWID---------------ARNSAILYLL 163
                   RA N KQ L L D  L    +  K  +                R+ AI+ LL
Sbjct: 145 KKKETLASRAENIKQKLFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALL 204

Query: 164 YGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKAIL--------- 211
              G+R+SEA++L  +++   M     +R  GK D + +        ++ L         
Sbjct: 205 LASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDSVNVAGFAKGYLESYLAVRQRRYKA 264

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           E  DL  F       L  +RG+  + ++    ++ + +        +  T H LRH+ AT
Sbjct: 265 EKQDLAFF-------LTEYRGVPNR-MDASSIEKMVGKYSE--DFKIRVTPHKLRHTLAT 314

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            L         +   LGH     T +YT++
Sbjct: 315 RLYDATKSQVLVSHQLGHSSTQVTDLYTHI 344


>gi|266622075|ref|ZP_06115010.1| putative INTEGRASE/RECOMBINASE XerD [Clostridium hathewayi DSM
           13479]
 gi|288866224|gb|EFC98522.1| putative INTEGRASE/RECOMBINASE XerD [Clostridium hathewayi DSM
           13479]
          Length = 296

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 16/175 (9%)

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
            R L++++ L LVD             + R S +L  +   G+RISE   +T + +   +
Sbjct: 109 SRELSKEEYLRLVDAAFRKG-------NERLSLLLQTVCSSGIRISELKYVTVEAVQKGK 161

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
           + +  +G+   IR V L   +   + EY           +Q  +F   RG  L+     R
Sbjct: 162 AEIECKGR---IRTVLLTRQLCNMLAEYAKRKGI-----MQGMIFITRRGNALDRSNIWR 213

Query: 246 YIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            ++ L    G+       H LRH FA        DL  +  ILGH  ++TT+IYT
Sbjct: 214 EMKALSMAAGVESDKIFPHNLRHLFARTYYEIEKDLSKLADILGHSDVNTTRIYT 268


>gi|153009974|ref|YP_001371189.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188]
 gi|151561862|gb|ABS15360.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188]
          Length = 315

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 21/148 (14%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI-LEYYDL-CPF 219
            L   G R+ EA+ +T  ++ D + T  +  K ++ R VPL    RKA  + +  L  PF
Sbjct: 167 FLVDTGCRLGEAIGVTWNDVQDQRVTFWLT-KSNRSRNVPLTRRARKAAHIPHEKLKGPF 225

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNG 277
            +                LN   F++   + +  +GL        H LRH+ A+ L+  G
Sbjct: 226 SM----------------LNQVRFRQIWNEAKMEVGLGTDDQVVPHILRHTCASRLVRGG 269

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            D+R +Q  LGH  L  T  Y ++ + +
Sbjct: 270 IDIRRVQMWLGHQTLQMTMRYAHLATHD 297


>gi|197284170|ref|YP_002150042.1| fimbriae recombinase [Proteus mirabilis HI4320]
 gi|6453632|emb|CAB61438.1| MrpI [Proteus mirabilis HI4320]
 gi|194681657|emb|CAR40716.1| fimbriae recombinase [Proteus mirabilis HI4320]
          Length = 188

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 13/171 (7%)

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIR 198
           N +L  + E ++ + R+  +  + +  G R+SE  +LT  +I  +   L ++  KG    
Sbjct: 13  NAILKQAKEGRYPE-RDYCMFLMCFLHGFRVSELCNLTLSDIDLESRILYVRRLKGGLST 71

Query: 199 IVPLLPSVRKAILEYYDLCPF-----DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
             P++        EY  LC +     +   +    +F   +  P++       +R+L + 
Sbjct: 72  TQPIIDE------EYEALCNWLKSRENWRESDSEWVFLSQKTGPISRQQVYGLLRRLGKK 125

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             + +S   H LRH+    L   G D R IQ  LGH  +S T IYT  NSK
Sbjct: 126 ANVSISPHPHMLRHACGYALADLGRDTRLIQDYLGHRNISHTVIYTASNSK 176


>gi|19746130|ref|NP_607266.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes
           MGAS8232]
 gi|34222913|sp|Q8P0Y8|XERS_STRP8 RecName: Full=Tyrosine recombinase xerS
 gi|19748306|gb|AAL97765.1| putative integrase/recombinase [Streptococcus pyogenes MGAS8232]
          Length = 356

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 131/330 (39%), Gaps = 64/330 (19%)

Query: 12  FELLKERQ---NWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           +E LKE +   +WL + ++ +   ++ + L + E  T++ L     Y  E+ ++ T    
Sbjct: 39  YEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLEAFVLYLRERPSLNT---- 94

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL- 125
                  + +K   + +   ++ R+LS + S  KYL +     +      RN+ K  S  
Sbjct: 95  -------YSTK---EGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTK 144

Query: 126 -------PRALNEKQALTLVDNVLLHTSHETKWID---------------ARNSAILYLL 163
                   RA N KQ L L D  L    +  K  +                R+ AI+ LL
Sbjct: 145 KKKETLASRAENIKQKLFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALL 204

Query: 164 YGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKAIL--------- 211
              G+R+SEA++L  +++   M     +R  GK D + +        ++ L         
Sbjct: 205 LASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDSVNVAGFAKGYLESYLAVRQRRYKA 264

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           E  DL  F       L  +RG+  + ++    ++ + +        +  T H LRH+ AT
Sbjct: 265 EKQDLAFF-------LTEYRGVPNR-MDASSIEKMVGKYSE--DFKIRVTPHKLRHTLAT 314

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            L         +   LGH     T +YT++
Sbjct: 315 RLYDATKSQVLVSHQLGHSSTQVTDLYTHI 344


>gi|319937020|ref|ZP_08011430.1| transposon integrase [Coprobacillus sp. 29_1]
 gi|319807956|gb|EFW04535.1| transposon integrase [Coprobacillus sp. 29_1]
          Length = 410

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 136/330 (41%), Gaps = 72/330 (21%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           +++RG+   T ++Y+            +   +I  Q I  +  T+I+ + +      + D
Sbjct: 81  DLKRGIKNNTFENYK-------YMYETFVRNQIGSQFIMSIKKTDIKRYYNSL----VDD 129

Query: 86  RSLK-RSLSGIKSFLKYLKKRKITTE---SNILN--MRNLKKSNSLP----RALNEKQAL 135
           R LK  ++  I + L  + +  +  +   SN  +  +R LKKS+       RAL + +  
Sbjct: 130 RHLKPATIDSIHTVLHQVFEMAVDDDYIRSNPTDNVLRELKKSHCFKTEKRRALTKPEQE 189

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT------PQNIMDDQSTL- 188
             ++  L +T     W       I  ++ G GLR+ E   L        + I+D   TL 
Sbjct: 190 LFLE-YLKNTPEAQYWY-----PIFAVMVGTGLRVGELTGLRWCDIDLEEGIIDVNHTLV 243

Query: 189 ----RIQG--KG-----------DKIRIVPLLPSVRKAIL---EYYDLCPFDLNLNIQLP 228
               R +G  KG             +R VP+L  V++A L   E  +L        +   
Sbjct: 244 YYDHRTEGSKKGCYFNVNTTKTPAGMRQVPMLEFVKEAFLMEKERQELLGLHCEATVDGY 303

Query: 229 ---LFRGIRGKPLNPGVFQRYIRQLRRYLG-------------LPLSTTAHTLRHSFATH 272
              +F    G+P +     + IR++ R                LP   + H+LRH+F T 
Sbjct: 304 TDFVFVNRFGQPQHQATLNKAIRRIIRNCNDKQFLESENPEVLLP-HFSCHSLRHTFTTR 362

Query: 273 LLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           +   G +++ IQ  LGH  +STT  IYT+V
Sbjct: 363 MCEAGVNVKVIQDALGHKDVSTTLNIYTDV 392


>gi|317126072|ref|YP_004100184.1| integrase [Intrasporangium calvum DSM 43043]
 gi|315590160|gb|ADU49457.1| integrase family protein [Intrasporangium calvum DSM 43043]
          Length = 374

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 85/205 (41%), Gaps = 36/205 (17%)

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE--AL 174
           RN+     LPRA+         D V    +         N   + +L  CGLR  E  AL
Sbjct: 147 RNVAAGVQLPRAVRADPRFLDADEVARLIAGAGT-----NGLSIAVLAFCGLRFGELAAL 201

Query: 175 SLTPQNIMD-----DQSTLRIQG-------KGDKIRIVPLLPSVRKAILEYYDLC----P 218
            +   N++       +S   + G       K ++ R VP  PS+   I     LC    P
Sbjct: 202 RVRRANVLRRRLVVAESVTEVGGRLVWSLPKTNRTRTVPFPPSLTPQI---EALCRGKGP 258

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            DL       LF    G  L  G ++R +     R  GL +  T H LRH+ A+  +++G
Sbjct: 259 DDL-------LFTAPEGGALRLGNWRRRVFDPACRAAGL-VGVTPHDLRHTAASLAIASG 310

Query: 278 GDLRSIQSILGHFRLSTT-QIYTNV 301
            +++++Q +LGH   + T  +Y  +
Sbjct: 311 ANVKAVQQMLGHASAAMTLDVYAGL 335


>gi|312888616|ref|ZP_07748185.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311298930|gb|EFQ76030.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 435

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 11/118 (9%)

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K D    +PLLP V   +LE Y   P  +N +  LP+    +           Y++++  
Sbjct: 285 KTDTPCPIPLLP-VALQLLEKYAHYPKCINQDRVLPVLTNQK--------MNAYLKEIAD 335

Query: 253 YLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYT-NVNSKNGGD 308
             G+    T H  RH+FAT + LSNG  + ++  +LGH  L  T  Y   ++SK G D
Sbjct: 336 LCGINKVLTFHLARHTFATTICLSNGVPMETVSKMLGHTNLKQTLHYAKTLHSKIGAD 393


>gi|332655051|ref|ZP_08420792.1| putative prophage LambdaCh01, site-specific recombinase, phage
           integrase family [Ruminococcaceae bacterium D16]
 gi|332515911|gb|EGJ45520.1| putative prophage LambdaCh01, site-specific recombinase, phage
           integrase family [Ruminococcaceae bacterium D16]
          Length = 457

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 8/84 (9%)

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS-NGG 278
           D NL     +F    GKP+   V  R   +L    GLP     H+LRHS  T+ L  NGG
Sbjct: 318 DFNL-----VFCSSNGKPIEGQVINRAFNKLIEEKGLP-KVVFHSLRHSSITYKLKLNGG 371

Query: 279 DLRSIQSILGHFRLS-TTQIYTNV 301
           D++S+Q   GH ++     +Y+++
Sbjct: 372 DMKSVQGDSGHAQVKMVADVYSHI 395


>gi|167769658|ref|ZP_02441711.1| hypothetical protein ANACOL_00992 [Anaerotruncus colihominis DSM
           17241]
 gi|167668019|gb|EDS12149.1| hypothetical protein ANACOL_00992 [Anaerotruncus colihominis DSM
           17241]
          Length = 410

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 42/189 (22%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLR---------IQGKG----------DKIRI 199
           I+ +L G G+R++E   +T  +I   ++T+          I GK              RI
Sbjct: 207 IMTVLLGTGMRVAECTGITKSDINLSENTISVNHNLIYRVIDGKAGFHITTPKTESGTRI 266

Query: 200 VPLL-PSVRKAI---LEYYDLCPFDLNL---NIQLPLFRGIRGKPLNPGVFQRYIRQLR- 251
           +P+L P V + +   +E  D    D  L    +   +FR   G  ++     R I ++  
Sbjct: 267 IPILYPEVAEQLRLQIETIDALYPDDQLVLGGVHGFVFRNRTGSFMSAHNINRAIERISV 326

Query: 252 --------------RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
                         R   L    + H LRH+F T L  +  D++ IQ ++GH   STT  
Sbjct: 327 TYNMEEMDQAELEDREPDLLPHFSVHNLRHTFCTRLCESTNDVKFIQQVMGHADFSTTMD 386

Query: 297 IYTNVNSKN 305
           IYT++  +N
Sbjct: 387 IYTHITQEN 395


>gi|94498364|ref|ZP_01304923.1| putative integrase [Sphingomonas sp. SKA58]
 gi|94422244|gb|EAT07286.1| putative integrase [Sphingomonas sp. SKA58]
          Length = 410

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 125/312 (40%), Gaps = 48/312 (15%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E+ +E + WL+    ERGL+  ++ +   + R FL     +  ++    ++  LS  +I 
Sbjct: 113 EICREYEAWLRE---ERGLASASIAALMWEARNFL----RWQFDRAGAASLETLSIVDID 165

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTE--SNILNMRNLKKSNSLPRAL 129
            ++  R    +  +SL      ++S +++L +  +I T+   +I+    L     +P  L
Sbjct: 166 LYMDMR-APGLRRKSLADVAERLRSVVRHLHRTGRIPTDLTPHIIG-PMLYAYEDVPSTL 223

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              Q    +  VL  T  +      R+ AIL LL   GLR  E   L   ++     +LR
Sbjct: 224 ERSQ----IAAVLATTQEDRSPRGLRDYAILQLLATYGLREGEICRLRLDDVDWRAESLR 279

Query: 190 I-QGKGDKIRIVPLLPSVRKAILEYYDL---------------CPFDLNLNIQLPLFRGI 233
           I   K +    +PL+ +V +A+L+Y  L                P+    N    L+  I
Sbjct: 280 ICHTKTNAYSYMPLMVTVGEALLDYLRLGRPQVEVREIFVRSCAPYIAMTN----LYGMI 335

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           RG+    GV     R              H  RH+ A  +L      + I  +LGH    
Sbjct: 336 RGRLAAAGVVPAGKR------------GPHVFRHARAVEMLRASVPQKIIGDVLGHRSTE 383

Query: 294 TTQIYTNVNSKN 305
           +T  Y  + + +
Sbjct: 384 STNTYLKLATDD 395


>gi|303326864|ref|ZP_07357306.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
 gi|302862852|gb|EFL85784.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
          Length = 448

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGL------PLSTTA-HTLRHSFATHLLSNGGDLR 281
           LF G  GK  +     R +R++   L        P +T   HTLRH++AT +L  G D+ 
Sbjct: 349 LFPGPGGKARDSNGLNRAMRRIMEKLKFNEGVDDPRNTVVWHTLRHTYATKMLEAGTDIY 408

Query: 282 SIQSILGHFRLSTTQIY 298
           +++ ++GH  ++TT+IY
Sbjct: 409 TLKELMGHASVTTTEIY 425


>gi|291550344|emb|CBL26606.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 397

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 72/158 (45%), Gaps = 35/158 (22%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI----------------RIVPLLPS 205
           +L G GLRISE   LT  +I  D+  + +  +  KI                R++P+   
Sbjct: 218 ILLGTGLRISELCGLTEADIDLDKQLIHVDHQLLKIADVGYYVETPKTKSGNRVIPMSEK 277

Query: 206 VRKA--------------ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           V +A              ILE Y    F LN N  LP    +  + +  G+ ++Y +  +
Sbjct: 278 VLEAFQRVLNKRKYAQPVILEGYTKFLF-LNRN-GLPKV-AVNYESMFRGLVRKYNKTQK 334

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
             + LP   T HTLRH+F T L + G + +++Q I+GH
Sbjct: 335 --VALPKVMTPHTLRHTFCTTLANAGMNPKALQYIMGH 370


>gi|289642625|ref|ZP_06474766.1| integrase family protein [Frankia symbiont of Datisca glomerata]
 gi|289507534|gb|EFD28492.1| integrase family protein [Frankia symbiont of Datisca glomerata]
          Length = 147

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS- 293
           G PL P    R   QLR   GLP     H LRH+FA+ L S G   R++  +LGH  +  
Sbjct: 34  GTPLEPRNVNRRFDQLREKAGLPW-LRLHDLRHAFASMLFSEGVPARTVMELLGHSTIQL 92

Query: 294 TTQIYTNV 301
           T   YT+V
Sbjct: 93  TMNTYTHV 100


>gi|317152205|ref|YP_004120253.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942456|gb|ADU61507.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 340

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 14/154 (9%)

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK--GD 195
           +D+V    +H    +  + +  L L  GC    SE L +   ++  D   +RI+G     
Sbjct: 171 IDDVRAIMAHAAPHV--QKAIKLILSTGCRPGKSELLRIKYSDVDFDAKRVRIRGSKTAR 228

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
             R VPL       I  + D    D  +  +        GK LN   F++      R  G
Sbjct: 229 SDRYVPLRDEFLAEIRGWQDAAESDYIVEFE--------GKQLNG--FKKGFNAAVRRSG 278

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           +      + LRH FA+ LL+N  D++++ S++GH
Sbjct: 279 IGKKVVPYHLRHFFASSLLANKADIKAVASLMGH 312


>gi|260641921|ref|ZP_05413997.2| integrase [Bacteroides finegoldii DSM 17565]
 gi|260624123|gb|EEX46994.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 396

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 17/118 (14%)

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLP 257
            +PL P V + ILE Y+        + + P+F      PL    +    +  L   LG+ 
Sbjct: 280 FIPLHP-VAEQILELYNTT------DNEKPVF------PLPVRDILWYEVHGLGVALGMK 326

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK---NGGDWMME 312
            + + H  RHSF T ++++G  + SI  ++GH  +++TQ+Y  V  +   +  DW+M+
Sbjct: 327 ENLSYHMARHSFGTLMMTSGIPIESIAKMMGHTNINSTQVYAQVTDQKISSDMDWLMK 384


>gi|28870144|ref|NP_792763.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28853390|gb|AAO56458.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|330963541|gb|EGH63801.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. actinidiae str. M302091]
 gi|331015496|gb|EGH95552.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 321

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 111/246 (45%), Gaps = 16/246 (6%)

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            + A ++  R       +    ++ I+  +    +  + +   +L +R++K  +    A 
Sbjct: 71  HVTALVATLREDDYAPNTTSLYVNAIRGVMNEAWRHDLISHDQLLKIRSIKPVSGTRLAK 130

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
                 TL+  ++   + + +    R++AI+ +LYG G+R SE+++L    I   + +LR
Sbjct: 131 GRNIRRTLIRELMEACAADPRPQGRRDAAIIAILYGSGMRKSESVNLDLAQIDFAERSLR 190

Query: 190 IQGKGDKIRIVPLLPS-VRKAILEYYDL---CPFDLNLNIQLPLFRGI-RGKPLNPGVFQ 244
           + GKG+K +++   P    KA+ ++ +L   C         L LF  I RG  +      
Sbjct: 191 VMGKGNK-QLIKYAPEWAFKALNDWLELRRSC-LQPGQGDDLFLFNRIRRGSHITRDRIT 248

Query: 245 RY-----IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           ++      +Q  R +G+ +    H  R SF T ++    DL   Q +  H  +STT  Y 
Sbjct: 249 KHAIYFIAKQRGRQVGVDI--MPHDFRRSFITRVIEE-FDLSIAQKLAHHTHISTTASY- 304

Query: 300 NVNSKN 305
           ++ S+N
Sbjct: 305 DMRSEN 310


>gi|15612016|ref|NP_223668.1| integrase/recombinase (XERCD family) [Helicobacter pylori J99]
 gi|4155532|gb|AAD06529.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Helicobacter pylori J99]
          Length = 357

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 122/271 (45%), Gaps = 35/271 (12%)

Query: 48  IFLAF-YTEEKITIQTIRQLSYTEIRAF----ISKRRTQKIGDRSLKRSLSGIKSFLKYL 102
           +FL F Y + +I ++++R L+  ++  F    +  R+       S+ + +  ++ F  YL
Sbjct: 77  LFLFFEYFDNRIKLKSLRNLAEEQVIDFLFGLVKNRKPS-----SMAKYVMVLRQFFDYL 131

Query: 103 -KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
            +KR  + +  + N+   KK   LP+ LN+      +  +L +  H     + RN  IL 
Sbjct: 132 DRKRNYSFDFELKNLSFAKKEMYLPKHLNKNDFKAFIQALLKY--HPKTSFEKRNQCILL 189

Query: 162 LLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           L+   GLR  EAL L  +NI   ++   L I+GK +K R       + K  L+     P 
Sbjct: 190 LIALGGLRKFEALDLELKNIALENNHYRLLIKGKNNKERY----AYIEKEFLQ----VPL 241

Query: 220 D--LNLNIQLPLFRG--IRGKPLNPGV-----FQRYIRQLRRYLGLPLSTTA---HTLRH 267
           +  L+   +L  F+G  +  K  N         + +I ++ +   + + +     H  RH
Sbjct: 242 NAWLSDTKRLKSFKGRFVFKKAKNNTTQKTCSLKGFIAKIFKLSNIDVKSYGLGLHLFRH 301

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           SFAT +     DL      LGH  L +T+IY
Sbjct: 302 SFATFIYDETQDLVLTSRALGHSSLLSTKIY 332


>gi|294614065|ref|ZP_06693993.1| integrase [Enterococcus faecium E1636]
 gi|291593072|gb|EFF24653.1| integrase [Enterococcus faecium E1636]
          Length = 361

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 77/161 (47%), Gaps = 8/161 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI  L+ G GLR+SE +++   ++  D++ + +  KG+K   V +     + +  Y 
Sbjct: 201 RDLAINALILGSGLRLSEVVNINLDDLSLDKNKVVVTRKGNKRDAVNIAAFAMEYLANYL 260

Query: 215 DLCP--FDLNLN---IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
            +    + +  N   + L +++G   K ++    +R + +  +  G  +  + H LRH+ 
Sbjct: 261 AIRKERYKVTENEKALFLAIYQG-EAKRISGIAIERMVAKYSK--GFRVQVSPHKLRHTL 317

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           AT L      L      LGH   +TT +YT++++    D +
Sbjct: 318 ATRLYQQTNSLVLTAQQLGHSSTNTTTLYTHIDNAATIDAL 358


>gi|237740351|ref|ZP_04570832.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
 gi|294782552|ref|ZP_06747878.1| integrase/recombinase, phage integrase family [Fusobacterium sp.
           1_1_41FAA]
 gi|229422368|gb|EEO37415.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
 gi|294481193|gb|EFG28968.1| integrase/recombinase, phage integrase family [Fusobacterium sp.
           1_1_41FAA]
          Length = 329

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 108/249 (43%), Gaps = 21/249 (8%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK----SFLKYLKKRKITTESNILNM 116
           ++I+ ++  ++R ++     QK G+ S K ++  I+    SF  +L++     +S +  +
Sbjct: 88  KSIKHITTNDLREYLD--NYQKEGNAS-KITIDNIRRIFSSFFAWLEEEDYILKSPVRRI 144

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             +K    +    +++    + DN              R+ AI+ +L   G+R+ E + L
Sbjct: 145 HKVKTGTVVKETYSDEAMEIMRDNCK----------SLRDLAIIDILASTGMRVGELVKL 194

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
             ++I  +     + GKGDK R V    +  K  L  Y     D N  + + L +    K
Sbjct: 195 NIEDIDFEGRECVVFGKGDKERKV-YFDARTKIHLHNYLKTRDDDNSALFVSLLKP--HK 251

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L     +  +R+L + L +      H  R + AT  +  G  +  +Q +LGH ++ TT 
Sbjct: 252 RLQISGVEIMLRELGKKLNIT-KVHPHKFRRTLATKAIDKGMPIEQVQQLLGHQKIDTTL 310

Query: 297 IYTNVNSKN 305
            Y  V+  N
Sbjct: 311 QYAMVSQNN 319


>gi|228926958|ref|ZP_04090024.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228832693|gb|EEM78264.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
          Length = 319

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 127/294 (43%), Gaps = 23/294 (7%)

Query: 16  KERQNWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +E +N +++  IE+   G +  TLQ Y  D R  L  +  + E K  I+  R+    +IR
Sbjct: 16  QENKNLVKDFLIEKKAQGKAASTLQQYHWDLRIILFLIHEHFENKNLIELTRK----DIR 71

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILN-MRNLKKSNSLP-RAL 129
                 +  K+ +  +   +S ++S L++         E N+ + +R L KS       +
Sbjct: 72  NLSIIFQEMKMSNARVNGLMSALRSALEFCADDDDYEYEFNVGSRVRGLPKSPIREITFI 131

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            E Q   L+D +L     + K++ A     L L Y    R +E   +  + + +   T  
Sbjct: 132 TEYQINWLIDELL----EQEKYMLA---TYLSLSYYSAARKNEVYQVQKEGLTEQYYTNV 184

Query: 190 IQGK-GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           ++GK G K R+    P V+K I  Y +    D   ++ + +++    K LN  VF  + +
Sbjct: 185 VRGKRGKKFRLY-YNPRVQKCIRLYINQRGKDAIPDLFVRVYKNGERKTLNKSVFNYWCK 243

Query: 249 QLRRYL----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              + L    G       H  RHS   +L   G  L  ++S+  H  +STT+ Y
Sbjct: 244 IFSKMLNEKEGKDFKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTESY 297


>gi|17158647|ref|NP_478158.1| integrase-recombinase protein [Nostoc sp. PCC 7120]
 gi|17134596|dbj|BAB77154.1| integrase-recombinase protein [Nostoc sp. PCC 7120]
          Length = 360

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 129/315 (40%), Gaps = 60/315 (19%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS---- 76
           W+ ++ I+   S  T ++Y    RQ    L  Y   +  I  +R ++   + A+++    
Sbjct: 49  WVHSVTIK---SDQTRRAY----RQIGYELVDYMHSRFGISDLRMVTLFHLHAYLTWLKD 101

Query: 77  ------KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLP-RA 128
                 K+ T  I   +  +  + IKS  ++  +  I   +  L    +++  + L  R 
Sbjct: 102 EKPVRGKKNTYGISKNTAAKYTAAIKSLWEWGTRASIGYFAIDLGKDLSIQWDDKLAERI 161

Query: 129 LNEKQ------ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS------- 175
           L+E++      A   VD  L H +++  W+      +  L++  G+R  E          
Sbjct: 162 LSEREIAKLEKAAMAVD--LQHNTNKMHWL------LFTLVFYSGVRAGEIARQTSDYGK 213

Query: 176 --LTP----QNIMDDQSTL--RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
             +TP    +   +D   L   + GK +K R + L P     +L+Y      D       
Sbjct: 214 RVITPGLFWRQFREDGDCLLLTVTGKRNKTRTISLDPETSAVLLDYRGDASNDQ------ 267

Query: 228 PLF----RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
           P+F    R  RGKPL+    +  + ++    G+  S  AH LRH+ AT    NG     +
Sbjct: 268 PVFPSPSRRDRGKPLSDRGLRLMMEEISACAGIKFS--AHFLRHTHATLAKKNGASDFDL 325

Query: 284 QSILGHFRLSTTQIY 298
           Q+ LGH   +TT  Y
Sbjct: 326 QADLGHASPATTAKY 340


>gi|301307883|ref|ZP_07213839.1| integrase [Bacteroides sp. 20_3]
 gi|300834226|gb|EFK64840.1| integrase [Bacteroides sp. 20_3]
          Length = 433

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 7/86 (8%)

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQ----LRRYLG--LPLSTTAHTLRHSFATHL-LS 275
           L+I L +    RG+     VF  Y R     L R LG       T H  RH+F TH+ LS
Sbjct: 307 LDIPLQIIEKYRGQRSGDKVFNIYARGYFILLTRELGQVYGFDLTFHQARHNFGTHITLS 366

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNV 301
            G  + ++  ++GH  +STTQIY  V
Sbjct: 367 LGVPIETVSRMMGHTSISTTQIYAQV 392


>gi|256021081|ref|ZP_05434946.1| bacteriophage integrase [Shigella sp. D9]
 gi|332282306|ref|ZP_08394719.1| site-specific recombinase [Shigella sp. D9]
 gi|332104658|gb|EGJ08004.1| site-specific recombinase [Shigella sp. D9]
          Length = 343

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 28/186 (15%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--------TKWIDARNSAILYLLYGCGLRISEALS 175
           S P  L   +  T+ +  +   +HE         K  +   + ++ +    G R  EA++
Sbjct: 154 SYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKCQNPILALVVKICLSTGARWREAVN 213

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           LT   +   + T  ++ KG K R +P+   + + I+    L  F+               
Sbjct: 214 LTRSQVTKYRITF-VRTKGKKNRSIPISKELYEEIMA---LDGFNF-------------- 255

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  FQ      +  + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T
Sbjct: 256 --FTDCYFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMT 313

Query: 296 QIYTNV 301
             Y ++
Sbjct: 314 MRYAHL 319


>gi|160890282|ref|ZP_02071285.1| hypothetical protein BACUNI_02722 [Bacteroides uniformis ATCC 8492]
 gi|317481519|ref|ZP_07940580.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|156860014|gb|EDO53445.1| hypothetical protein BACUNI_02722 [Bacteroides uniformis ATCC 8492]
 gi|316902319|gb|EFV24212.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 388

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 4/82 (4%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LFR ++       V  R ++ + + LG+    +A T RH+FAT  L    DL S+Q +LG
Sbjct: 303 LFRNVQCD----QVVNRQLKAIAKELGINKKISAKTGRHTFATIYLRKTKDLSSLQKLLG 358

Query: 289 HFRLSTTQIYTNVNSKNGGDWM 310
           H  +  T IY +V  ++  + M
Sbjct: 359 HSNIRETMIYAHVMDESKREGM 380


>gi|306823936|ref|ZP_07457310.1| phage integrase [Bifidobacterium dentium ATCC 27679]
 gi|309802320|ref|ZP_07696427.1| site-specific recombinase, phage integrase family [Bifidobacterium
           dentium JCVIHMP022]
 gi|304552934|gb|EFM40847.1| phage integrase [Bifidobacterium dentium ATCC 27679]
 gi|308220920|gb|EFO77225.1| site-specific recombinase, phage integrase family [Bifidobacterium
           dentium JCVIHMP022]
          Length = 367

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 33/159 (20%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------GKGD--------KIRIVPLL 203
           A++  L  CGLR  EA +L  +++    + LR++      GK          ++R VP+ 
Sbjct: 186 ALILTLGFCGLRWGEAAALRVKHVDTQNNRLRVRLSWVRSGKKHFEGAPKTWEVRDVPVP 245

Query: 204 PSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPL------NPGVFQRYIRQLRRYLGL 256
             V  AI E  +   P DL       +F    G  L      N G + R +R      G+
Sbjct: 246 DQVMSAIKEQCEGKGPEDL-------VFTAPSGGHLREQSAKNHGWYARALRDS----GV 294

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           P + T H LRH+ A+  +S+G +++++Q +LGH   + T
Sbjct: 295 P-TLTCHDLRHTAASIAISSGANVKAVQRMLGHKNAAMT 332


>gi|265767465|ref|ZP_06095131.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263252770|gb|EEZ24282.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 271

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 3/60 (5%)

Query: 248 RQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + LRR++   G+    + H  RHSFA ++L+NG ++++I  +LGH  L  T+ YT    K
Sbjct: 198 KSLRRWVKRAGIDKHISWHCARHSFAVNILNNGANIKTIAGLLGHSGLKHTKKYTRAVDK 257


>gi|253569542|ref|ZP_04846952.1| tyrosine type site-specific recombinase [Bacteroides sp. 1_1_6]
 gi|251841561|gb|EES69642.1| tyrosine type site-specific recombinase [Bacteroides sp. 1_1_6]
          Length = 452

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 18/151 (11%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSV----------R 207
             +  + CGLR+ + ++L   +I  ++  LR I  K +K  ++PL              R
Sbjct: 279 FFFAFHACGLRVVDVMTLQWGHINFEKKELRKIMIKTNKRHVIPLTEQAISILRQWQEKR 338

Query: 208 KAILEYYDLCPFDLNLNIQLPLF--RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           +     ++L   +L+L+    L+  R    K +N  +       +   +GLP + + H  
Sbjct: 339 EGCKYVFNLVKEELDLDDAEALYKARNNATKCINQSLVV-----VGEQIGLPFNLSMHVA 393

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           RHSFA   L+ G  +  +  +LGH     T+
Sbjct: 394 RHSFAVFALNKGLSMTVVSRLLGHGSTDVTE 424


>gi|171741671|ref|ZP_02917478.1| hypothetical protein BIFDEN_00757 [Bifidobacterium dentium ATCC
           27678]
 gi|283455017|ref|YP_003359581.1| phage integrase [Bifidobacterium dentium Bd1]
 gi|171277285|gb|EDT44946.1| hypothetical protein BIFDEN_00757 [Bifidobacterium dentium ATCC
           27678]
 gi|283101651|gb|ADB08757.1| phage integrase [Bifidobacterium dentium Bd1]
          Length = 367

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 33/159 (20%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------GKGD--------KIRIVPLL 203
           A++  L  CGLR  EA +L  +++    + LR++      GK          ++R VP+ 
Sbjct: 186 ALILTLGFCGLRWGEAAALRVKHVDTQNNRLRVRLSWVRSGKKHFEGAPKTWEVRDVPVP 245

Query: 204 PSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPL------NPGVFQRYIRQLRRYLGL 256
             V  AI E  +   P DL       +F    G  L      N G + R +R      G+
Sbjct: 246 DQVMSAIKEQCEGKGPEDL-------VFTAPSGGHLREQSAKNHGWYARALRDS----GV 294

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           P + T H LRH+ A+  +S+G +++++Q +LGH   + T
Sbjct: 295 P-TLTCHDLRHTAASIAISSGANVKAVQRMLGHKNAAMT 332


>gi|150005688|ref|YP_001300432.1| integrase [Bacteroides vulgatus ATCC 8482]
 gi|149934112|gb|ABR40810.1| integrase [Bacteroides vulgatus ATCC 8482]
          Length = 404

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 21/163 (12%)

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI-VPLLPSV 206
           + K+++      ++     G+  ++  +LT +NI++ +     Q  G  I+I +P     
Sbjct: 234 QKKYVELSKDIFIFSYLCGGINFTDIANLTQENIVNGRLHYIRQKTGKLIKIGIP--QEA 291

Query: 207 RKAILEYYD-----LCPFDLNLNIQLPLFRG------IRGKPLNPGVFQRYIRQLRRYLG 255
            + I +Y D     L P  LN+ +     +       IRGK          ++ L + LG
Sbjct: 292 MQIIKKYTDESNGYLFPI-LNVKVHKTALQKQNRIHKIRGK------VNDILKTLGKRLG 344

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +  + T +  RHSFA+ L  +G ++  I   LGH  L+TTQIY
Sbjct: 345 IEANITTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIY 387


>gi|147677726|ref|YP_001211941.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
 gi|146273823|dbj|BAF59572.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
          Length = 317

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 10/193 (5%)

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVL---LHTSHETKWIDARNSAILYLLYGCGLRIS 171
           NM +   +  + +  +E +A  + ++ L   L       +   R+ A++ L    G+R  
Sbjct: 96  NMLHANPTEGIAKRKDEGKAREIPEDTLKNLLALPDRRTYAGIRDYALILLQVDTGIRPG 155

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
           EAL+L P +    Q  + I  +  K R        P   KAI    D+ P D N ++  P
Sbjct: 156 EALNLKPSDFNIPQLEVVIPRETAKTRTQRTAVYSPVTAKAIKRLLDVRPPDWNDSV--P 213

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +F    GK +    +   +R   + +G  L    + LRH+ A   L NG     +Q  LG
Sbjct: 214 VFASQDGKRMLETSWANRLRAYGKRIGADLQP--YMLRHTSAIMALRNGATAFFVQKQLG 271

Query: 289 HFRLSTTQIYTNV 301
           H  +  T+ Y  +
Sbjct: 272 HSDMQMTKRYCRL 284


>gi|71903550|ref|YP_280353.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes
           MGAS6180]
 gi|71802645|gb|AAX71998.1| recombinase [Streptococcus pyogenes MGAS6180]
          Length = 368

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 131/330 (39%), Gaps = 64/330 (19%)

Query: 12  FELLKERQ---NWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           +E LKE +   +WL + ++ +   ++ + L + E  T++ L     Y  E+ ++ T    
Sbjct: 51  YEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLEAFVLYLRERPSLNT---- 106

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL- 125
                  + +K   + +   ++ R+LS + S  KYL +     +      RN+ K  S  
Sbjct: 107 -------YSTK---EGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTK 156

Query: 126 -------PRALNEKQALTLVDNVLLHTSHETKWID---------------ARNSAILYLL 163
                   RA N KQ L L D  L    +  K  +                R+ AI+ LL
Sbjct: 157 KKKETLASRAENIKQKLFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALL 216

Query: 164 YGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKAIL--------- 211
              G+R+SEA++L  +++   M     +R  GK D + +        ++ L         
Sbjct: 217 LASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDSVNVAGFAKGYLESYLAVRQRRYKA 276

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           E  DL  F       L  +RG+  + ++    ++ + +        +  T H LRH+ AT
Sbjct: 277 EKQDLAFF-------LTEYRGVPNR-MDASSIEKMVGKYSE--DFKIRVTPHKLRHTLAT 326

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            L         +   LGH     T +YT++
Sbjct: 327 RLYDATKSQVLVSHQLGHSSTQVTDLYTHI 356


>gi|238784932|ref|ZP_04628931.1| Integrase [Yersinia bercovieri ATCC 43970]
 gi|238714147|gb|EEQ06160.1| Integrase [Yersinia bercovieri ATCC 43970]
          Length = 342

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 22/143 (15%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           ++ +    G R +EA  LT   +  ++ T  I+ KG K R VP+   +   ++       
Sbjct: 197 VVKVCLSTGARWNEAEKLTRSQVSPNKITF-IRTKGKKNRSVPISKELHDELV------- 248

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNG 277
                         + G  L    + R++  +    + LP     H LRH+FA H + +G
Sbjct: 249 -------------ALEGDRLFSECYFRFMAAINTTDIKLPTGQLTHVLRHTFAAHFMMSG 295

Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300
           G++  +Q ILGH  +  T  Y +
Sbjct: 296 GNILVLQRILGHSDIQMTMRYAH 318


>gi|332827381|gb|EGK00138.1| hypothetical protein HMPREF9455_03545 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 412

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 66/151 (43%), Gaps = 28/151 (18%)

Query: 162 LLYGC--GLRISEALSLTPQNI---MDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD 215
            ++ C  GL   +   LT  NI   +D +  +  +  K D I  VPLL  V  AI+E Y 
Sbjct: 252 FVFACWTGLAYVDTYKLTYDNIKIGVDGKPWIMTKRAKTDTIVTVPLL-DVPLAIIEKY- 309

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGV----FQRYIRQLRRYLGLPLSTTAHTLRHSFA- 270
                          RG +   + P +       Y++++    G+    + H  RH+FA 
Sbjct: 310 ---------------RGKQDDKVLPTLSNQKMNSYLKEIGTVCGIEKRLSFHLARHTFAS 354

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T  L+ G  + ++  +LGH  + TTQIY  V
Sbjct: 355 TTTLAKGVSIEAVSKMLGHTNIRTTQIYARV 385


>gi|282858083|ref|ZP_06267278.1| site-specific recombinase, phage integrase family [Pyramidobacter
           piscolens W5455]
 gi|282584005|gb|EFB89378.1| site-specific recombinase, phage integrase family [Pyramidobacter
           piscolens W5455]
          Length = 338

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 30/43 (69%), Gaps = 1/43 (2%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
           HTLRH+F ++LLSNG   + +Q +LGH  +STT  IY +V  +
Sbjct: 281 HTLRHTFTSNLLSNGAQPKDVQELLGHADVSTTMNIYAHVTKE 323


>gi|161525452|ref|YP_001580464.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|160342881|gb|ABX15967.1| integrase family protein [Burkholderia multivorans ATCC 17616]
          Length = 304

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 72/158 (45%), Gaps = 22/158 (13%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           + +  LL   GLRISEAL L  Q+I  D   + ++ K +K R+VPL  +VR A+  Y  L
Sbjct: 129 ATLFGLLAATGLRISEALRLRLQDITVD-GLMILETKFNKSRLVPLHDTVRAALERY--L 185

Query: 217 CPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIR-------QLRRYLGLPLSTTAHTLRHS 268
                       LF G  GK P   GV   ++R       Q  R  GLP     H LRH+
Sbjct: 186 VVRTRTATSTDALFVGTNGKAPGYRGVKDVFVRLVTVMGLQQARNGGLP---HIHDLRHT 242

Query: 269 FATHLLSN-GGD-------LRSIQSILGHFRLSTTQIY 298
            A   L    GD       + ++ + LGH +++ T  Y
Sbjct: 243 LAVRSLEQFRGDRNAISRHMTALSTYLGHTKVTDTYWY 280


>gi|323487258|ref|ZP_08092561.1| hypothetical protein HMPREF9474_04312 [Clostridium symbiosum
           WAL-14163]
 gi|323399484|gb|EGA91879.1| hypothetical protein HMPREF9474_04312 [Clostridium symbiosum
           WAL-14163]
          Length = 344

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 127/308 (41%), Gaps = 42/308 (13%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           +FE+L + QN L    I  G +K T++ Y  + +  L++             IR +    
Sbjct: 60  TFEILHDWQNQL----IIDGKTKSTIKQYGYEIKNLLLYAG---------TGIRDIREKH 106

Query: 71  IRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +  ++++ + QK   D++    +  +++F K+  +  + T   +  ++  K+   +   L
Sbjct: 107 VIGYLTRGKVQKKWKDKTYNSKVRSLRAFFKWAYEYDVITTDPMKRIKETKEEYRMGSIL 166

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
             +Q                   + R  A++ LLY  G R+SE + L   +I      + 
Sbjct: 167 TPEQREIF----------RCCCKNERELALVDLLYSSGGRVSEIIQLNRDSIDLSNRRVN 216

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRY 246
           I GKG K R +      +  I  Y      D   L ++ + P  R       + GV  RY
Sbjct: 217 IVGKGRKEREIRFSAQAKVHIEGYLRSRKDDSQALFVSQKAPHKR-----LSDDGV--RY 269

Query: 247 IR---QLR--RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTN 300
           I    Q R  R  GL +S   HT R +  T +++ G     +Q  LGH ++ TT Q Y  
Sbjct: 270 ILKTIQSRDVRLKGLQIS--PHTFRRTCGTDMINRGAPAELVQKKLGHTKVDTTLQCYAK 327

Query: 301 VNSKNGGD 308
           ++ +   D
Sbjct: 328 ISQEAARD 335


>gi|309777265|ref|ZP_07672227.1| tyrosine recombinase XerC [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914945|gb|EFP60723.1| tyrosine recombinase XerC [Erysipelotrichaceae bacterium 3_1_53]
          Length = 356

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 73/146 (50%), Gaps = 14/146 (9%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD--KIRIVPLLPSVRKAILEYYDL 216
           +L ++Y  G R+ E  ++  +++     T+R   K +  K R+VP+   ++K +++YY  
Sbjct: 207 VLIMIY-TGFRVGELFNIRREDVDVQNMTIRGGSKTEAGKNRLVPVHEKIQKYVMDYY-- 263

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQ-RYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
                  N +  +     GK  N  +++ +Y  ++   L   +    H  RH+FAT L +
Sbjct: 264 -----LQNYEYLISDTDTGKKFNYHMYRNQYFDKIMDML--DMEHLPHDCRHTFATRLSN 316

Query: 276 NGGDLRSIQSILGHFRLSTTQ-IYTN 300
            G +   I+ ++GH   +TT+ IYT+
Sbjct: 317 YGANSTCIKKLIGHSSYATTEKIYTH 342


>gi|77412001|ref|ZP_00788330.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae CJB111]
 gi|77161957|gb|EAO72939.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae CJB111]
          Length = 356

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 60/283 (21%), Positives = 116/283 (40%), Gaps = 41/283 (14%)

Query: 57  KITIQTIRQLSYTEIRAFI----------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK 106
           +I +  +  L+  ++ AFI          +  R   +   ++ R+LS + S  KYL +  
Sbjct: 65  EIELSVLENLTKKDMEAFILYLRERPLLNANTRQNGVSQTTINRTLSALSSLFKYLTEEV 124

Query: 107 ITTESNILNMRNLKKSNSL--------PRALNEKQALTLVDNVL-----LHTSHETKWID 153
              +      RN+ K  S          RA N KQ L L +  +     ++  ++ K   
Sbjct: 125 ENADGEPYFYRNVMKKVSTKKKKETLASRAENIKQKLFLGNETIEFLEYINCEYQNKLSK 184

Query: 154 ----------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
                      R+ AI+ LL   G+R+SEA++L  ++I  +   + +  KG K   V + 
Sbjct: 185 RALAFFNKNKERDLAIIALLLASGVRLSEAVNLDLKDINLNVMVIDVTRKGGKRDSVNVA 244

Query: 204 PSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
              +  +  Y D+        + ++ + L  +RG+  + ++    ++ + +  +     +
Sbjct: 245 SFAKPYLANYLDIRKNRYKAENQDIALFLSEYRGVPNR-IDASSVEKMVAKYSQ--DFKV 301

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             T H LRH+ AT L         +   LGH     T +YT++
Sbjct: 302 RVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHI 344


>gi|257064609|ref|YP_003144281.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
 gi|256792262|gb|ACV22932.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
          Length = 356

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 28/156 (17%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTL-------RIQGKG--------DKIRIVPLLPSV 206
           +LY CGLR+ E L+LTP +I  ++ST+       RI G+           IR+V +   +
Sbjct: 194 ILYWCGLRVGEMLALTPSDINLERSTISVTKTFQRIHGRDTVTEPKTKKSIRLVTMPKFL 253

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            + I EY  +   D+  + +L  F   R    ++ G  +  ++++R           H L
Sbjct: 254 SEEIAEY--IASLDVGDHDRLFPFTKTRMHHEMDRGCKESGVKRIR----------IHDL 301

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           RHS  + L+  G    +I   +GH   + T  Y ++
Sbjct: 302 RHSHVSLLIDMGFSAVAIADRVGHESANITYRYAHM 337


>gi|218296683|ref|ZP_03497401.1| integrase family protein [Thermus aquaticus Y51MC23]
 gi|218242996|gb|EED09529.1| integrase family protein [Thermus aquaticus Y51MC23]
          Length = 416

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 72/163 (44%), Gaps = 23/163 (14%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------GKGDKI--------- 197
           D R + +L L   CGLR  EAL L  ++I  ++  L ++      G    I         
Sbjct: 208 DPRTALVLRLCLSCGLRKGEALGLQWEDIDLEKGLLYVRRTWSFDGARTAISDPKTASGR 267

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGK-PLNPGVFQRYIRQLRR 252
           R VP +PS   A LE Y    +   L    P    +F G+ G+ PL      R + ++ +
Sbjct: 268 RAVP-IPSKTLARLESYREW-WRERLGSYPPPSFWVFPGVNGQEPLGYNTPNRALTRILK 325

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            LGLP     H LRH++ + LL+ G  +  +   +GH   S T
Sbjct: 326 RLGLP-PARVHDLRHTYGSMLLARGAPVELVSERMGHTSPSIT 367


>gi|288802102|ref|ZP_06407543.1| LOW QUALITY PROTEIN: integrase [Prevotella melaninogenica D18]
 gi|288335537|gb|EFC73971.1| LOW QUALITY PROTEIN: integrase [Prevotella melaninogenica D18]
          Length = 129

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           Y++++    G+  + T H  RH+FAT  +S G  + S+  +LGH  +  TQIY  + +K
Sbjct: 49  YLKEIADLCGIKKNLTFHMTRHTFATMSISKGVPMESVSKMLGHTNIRITQIYARITNK 107


>gi|229892120|sp|Q1JLL7|XERS_STRPC RecName: Full=Tyrosine recombinase xerS
          Length = 356

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 131/330 (39%), Gaps = 64/330 (19%)

Query: 12  FELLKERQ---NWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           +E LKE +   +WL + ++ +   ++ + L + E  T++ L     Y  E+ ++ T    
Sbjct: 39  YEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLEAFVLYLRERPSLNT---- 94

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL- 125
                  + +K   + +   ++ R+LS + S  KYL +     +      RN+ K  S  
Sbjct: 95  -------YSTK---EGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTK 144

Query: 126 -------PRALNEKQALTLVDNVLLHTSHETKWID---------------ARNSAILYLL 163
                   RA N KQ L L D  L    +  K  +                R+ AI+ LL
Sbjct: 145 KKKETLASRAENIKQKLFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALL 204

Query: 164 YGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKAIL--------- 211
              G+R+SEA++L  +++   M     +R  GK D + +        ++ L         
Sbjct: 205 LASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDSVNVAGFAKGYLESYLAVRQRRYKA 264

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           E  DL  F       L  +RG+  + ++    ++ + +        +  T H LRH+ AT
Sbjct: 265 EKQDLAFF-------LTEYRGVPNR-MDASSIEKMVGKYSE--DFKIRVTPHKLRHTLAT 314

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            L         +   LGH     T +YT++
Sbjct: 315 RLYDATKSQVLVSHQLGHSSTQVTDLYTHI 344


>gi|313158930|gb|EFR58309.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 439

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 6/136 (4%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF--DLNLN 224
           G+R+S+    +  NI+D    +R + K D    +PL P +++ +   +DL     D  +N
Sbjct: 281 GMRVSDFSRFSESNIVDGMIMMRTR-KTDTPIAIPLHPVIQRILESDFDLSKTISDQKMN 339

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLR--RYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
           + + +   + G      + +    +L+  R     L +T HT R SFATHL  +   L +
Sbjct: 340 VYIKVVAKMAGIDEKVTICEHRGGELKEIRVEKYTLIST-HTARRSFATHLQRSKVPLTA 398

Query: 283 IQSILGHFRLSTTQIY 298
           I   LGH +++TT  Y
Sbjct: 399 ISKALGHKKVTTTMRY 414


>gi|303236457|ref|ZP_07323044.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483308|gb|EFL46316.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 431

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 15/164 (9%)

Query: 158 AILYLLYGC--GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVRKAIL 211
           A L  ++ C  GL IS+  +L  ++I    D Q  +R + +  K+  IVPL P + +AI+
Sbjct: 238 ARLMFVFSCFTGLAISDMENLEYKHIQTTADGQMYIRKERQKTKVEFIVPLHP-IAEAII 296

Query: 212 EYYDLCPFDLNLNIQLPLFRG-----IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            +   C  +   + +    +      +  +  +  V    +  + +  G+    + H  R
Sbjct: 297 SH---CQKEQERSEEQQTVKEKDDHLVFHRNCSRSVMDTKLSIVGKACGIRQRLSFHMAR 353

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           H+F T  LS G  + SI  ++GH  +S+TQ+Y  V  K   + M
Sbjct: 354 HTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDKKISEDM 397


>gi|302339270|ref|YP_003804476.1| integrase family protein [Spirochaeta smaragdinae DSM 11293]
 gi|301636455|gb|ADK81882.1| integrase family protein [Spirochaeta smaragdinae DSM 11293]
          Length = 416

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 61/298 (20%), Positives = 121/298 (40%), Gaps = 47/298 (15%)

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           I  +R+    E R+F+  R    +G R++ ++LS +K+ ++    +++      + +  +
Sbjct: 134 IAKMRRSDVLEFRSFMLDR----VGPRTVNKALSIVKAVIREAIFQEVIDRDPTIGVSKV 189

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K +      +  K+ L L    +        W    +  +       G+R SE L+L  +
Sbjct: 190 KLTEKKEPGVFTKEELLL----MFPEKGIGPWKSITDHTVFLTAASTGMRRSEILALRWE 245

Query: 180 NIMDDQSTLRI-------------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           N+  ++  + +             + K ++ R+VP+   +   + +  D  P+  + +  
Sbjct: 246 NVNLEKQFINVVEAFKDYRMIEIGKPKWERSRVVPIPKKLVTRLKDLRDQSPYAKDSDY- 304

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--------------PLSTTAHTLRHSFATH 272
             +F    G  L    + ++ R     +G+              P + T H+ RH+  T 
Sbjct: 305 --VFCYKDGTHLGGTWWSKHFRSACIAIGVIKAKKKVKENEDPNPRNLTPHSFRHTLNTL 362

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTN--VNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           LLSNG D   I++ LG         YT+  ++  NG   M+E       S  +KDKKN
Sbjct: 363 LLSNGYDSGKIRATLGWTSEKIQDNYTHFSIDHLNGQSDMVE-------SFFEKDKKN 413


>gi|167461311|ref|ZP_02326400.1| DNA integration/recombination/invertion protein [Paenibacillus
           larvae subsp. larvae BRL-230010]
 gi|322381332|ref|ZP_08055335.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154908|gb|EFX47179.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 187

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 76/168 (45%), Gaps = 22/168 (13%)

Query: 158 AILYLLYGCG-LRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILE- 212
           AI+++ Y  G LR SE+L+L   +I  D +++ ++     G KI+      S+RK  +  
Sbjct: 2   AIIFISYMIGGLRRSESLALEWSDIDYDDNSIFVRKSIAAGQKIKPPKTKQSIRKVRMPK 61

Query: 213 -YYD-LCPFDLNLNIQLP-------------LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
            Y+D L  F++  N +               +F    GKP    V  +   Q  R   LP
Sbjct: 62  WYFDELSKFEIIWNEEKETAGQKWEERKHSFIFHNGLGKPFYRTVPSQRWLQFIRANNLP 121

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
                H LRH+ AT LL  G  L+ IQ   GH    TT  IY++V  +
Sbjct: 122 -HIRLHDLRHTVATLLLEEGVRLKVIQERHGHANYQTTADIYSHVTKR 168


>gi|94994458|ref|YP_602556.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes
           MGAS10750]
 gi|94547966|gb|ABF38012.1| Integrase/recombinase xerD [Streptococcus pyogenes MGAS10750]
          Length = 373

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 75/340 (22%), Positives = 131/340 (38%), Gaps = 67/340 (19%)

Query: 12  FELLKERQ---NWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           +E LKE +   +WL + ++ +   ++ + L + E  T++ L     Y  E+ ++ T    
Sbjct: 56  YEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLEAFVLYLRERPSLNTYST- 114

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL- 125
                         + +   ++ R+LS + S  KYL +     +      RN+ K  S  
Sbjct: 115 -------------KEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTK 161

Query: 126 -------PRALNEKQALTLVDNVLLHTSHETKWID---------------ARNSAILYLL 163
                   RA N KQ L L D  L    +  K  +                R+ AI+ LL
Sbjct: 162 KKKETLASRAENIKQKLFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALL 221

Query: 164 YGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKAIL--------- 211
              G+R+SEA++L  +++   M     +R  GK D + +        ++ L         
Sbjct: 222 LASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDSVNVAGFAKGYLESYLAVRQRRYKA 281

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           E  DL  F       L  +RG+  + ++    ++ + +        +  T H LRH+ AT
Sbjct: 282 EKQDLAFF-------LTEYRGVPNR-MDASSIEKMVGKYSE--DFKIRVTPHKLRHTLAT 331

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGD 308
            L         +   LGH     T +YT++     KN  D
Sbjct: 332 RLYDATKSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALD 371


>gi|29347857|ref|NP_811360.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253572434|ref|ZP_04849836.1| integrase [Bacteroides sp. 1_1_6]
 gi|29339759|gb|AAO77554.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251837849|gb|EES65938.1| integrase [Bacteroides sp. 1_1_6]
          Length = 403

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 17/118 (14%)

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLP 257
            +PL P V + ILE Y+        + + P+F      PL    +    +  L   LG+ 
Sbjct: 287 FIPLHP-VAEQILELYNTT------DNEKPVF------PLPVRDILWYEVHGLGVALGMK 333

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK---NGGDWMME 312
            + + H  RHSF T ++++G  + SI  ++GH  +++TQ+Y  V  +   +  DW+M+
Sbjct: 334 ENLSYHMARHSFGTLMMTSGIPIESIAKMMGHTNINSTQVYAQVTDQKISSDMDWLMK 391


>gi|303238111|ref|ZP_07324650.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302481706|gb|EFL44762.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 407

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 39/71 (54%)

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           Y++++    G+  + T H  RH+FAT  +S G  + S+  +LGH  +  TQIY  + +K 
Sbjct: 327 YLKEIADLCGIKKNLTFHMARHTFATMSISKGVPMESVSKMLGHTNIRITQIYARITNKK 386

Query: 306 GGDWMMEIYDQ 316
               M ++ D+
Sbjct: 387 VEHDMEQLADK 397


>gi|238023353|ref|YP_002907586.1| Phage integrase family protein [Burkholderia glumae BGR1]
 gi|237880406|gb|ACR32736.1| Phage integrase family protein [Burkholderia glumae BGR1]
          Length = 563

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 127/306 (41%), Gaps = 49/306 (16%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +ERG  LS LT      D   +  FL   T  +  +   R     E R F     T  + 
Sbjct: 252 VERGRALSSLTTD----DAIAYRGFLRRPTPRERWVGPSRPRHSIEWRPF-----TGPLS 302

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            RS   +L+ + +  ++L +++    +    ++   KS++    L+  +  +  + VL+ 
Sbjct: 303 ARSAAYALNILSALFRWLVEQRYVLANPFACVK--IKSHAQRAGLDVSRGFSESEWVLIR 360

Query: 145 TSHET-----KWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDDQST---LRIQGK 193
           T  +       W       + +LL   Y  GLR SE +  T  +I  D+     L + GK
Sbjct: 361 TLADGLEWSYGWSAPAAQRLRFLLDFGYATGLRASELVGATLGDIRRDEHGDHWLHVLGK 420

Query: 194 GDKIRIVPLLPSVRKAILEYYDLC---PFDLNL-NIQLPLFRGIR--GKPLNPGVFQRYI 247
           G K+  V  LP++ +  L+ Y +    P    L N   PL   +   G  + P   +R  
Sbjct: 421 GGKLGKV-TLPTLARTALDQYLVQRGQPVTPTLWNPVTPLVASLEEDGAGIEP---RRLW 476

Query: 248 RQLRRYLGL---------PLST------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           R LRR+  L         P +       + H +RH+ A+H L+ G +L  ++  L H  +
Sbjct: 477 RVLRRFFALVADAIQDERPATAEKLRRASPHWMRHTHASHALARGAELIMVRDNLRHASI 536

Query: 293 STTQIY 298
           STT  Y
Sbjct: 537 STTSTY 542


>gi|15668543|ref|NP_247341.1| integrase/recombinase [Methanocaldococcus jannaschii DSM 2661]
 gi|2497424|sp|Q57813|Y367_METJA RecName: Full=Probable integrase/recombinase protein MJ0367
 gi|1591073|gb|AAB98346.1| integrase/recombinase [Methanocaldococcus jannaschii DSM 2661]
          Length = 330

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 10/153 (6%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEY 213
           R++ I+ LL+  G R+SE L+L  ++   D    +I+  K  + R V       + +  Y
Sbjct: 163 RDALIIRLLWDTGCRVSEVLNLKYKDCDLDNGIFKIRNTKTHEERTVVCSSDTLELLRNY 222

Query: 214 YDLCPFDLNLNIQLPLFRGIRG----KPLNPGVFQRYIRQLRRYLGLPLS--TTAHTLRH 267
                F++       LF+  +G    K     VF++ + +L+    +P +     H++RH
Sbjct: 223 ---VQFNVRQGSDDYLFQNSQGGRVRKEWISEVFRKAVNELKEEGKIPKNRRIVIHSIRH 279

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             A  LL+ G  +  ++  LGH  ++TT IY +
Sbjct: 280 GRAVDLLNKGVPIDIVKEYLGHKSMNTTLIYAH 312


>gi|330947559|gb|EGH48123.1| Orf28 [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 128

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 6/91 (6%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAILE 212
           R+ AIL +L   GLR  EA  L   ++ + +    LR+ GKG KIR +PL P     I  
Sbjct: 10  RDRAILAVLLYHGLRREEAAQLKTGDLQERRGIKHLRVHGKGSKIRFLPLHPVAADRIYA 69

Query: 213 YYDLCPFDLN-LNIQLPLFRGIRGKPLNPGV 242
           Y +L   D+       PLFR +RG     G+
Sbjct: 70  YLEL---DVKRAGGPGPLFRSMRGTTTGAGI 97


>gi|253578214|ref|ZP_04855486.1| integrase/recombinase [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850532|gb|EES78490.1| integrase/recombinase [Ruminococcus sp. 5_1_39BFAA]
          Length = 264

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 5/101 (4%)

Query: 121 KSNSLPRALNEKQA---LTLVDNVLLHTSHETKWIDARNSAILY-LLYGCGLRISEALSL 176
           KS  +P  +NE++     T+ D+ +   + +   I A    +L+  +Y CGLR+SEA  L
Sbjct: 121 KSYRVPYVMNEREIREFFTVADDYIPKVNADRFSILAEEYKVLFRFIYCCGLRVSEARKL 180

Query: 177 TPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
             ++I  + ++ L ++ KGDK R++ +   V    L+  DL
Sbjct: 181 KLEDIDFERKTALILRSKGDKDRLIYIADDVCNMCLDMLDL 221


>gi|217980190|ref|YP_002364240.1| integrase family protein [Thauera sp. MZ1T]
 gi|217508361|gb|ACK55146.1| integrase family protein [Thauera sp. MZ1T]
          Length = 182

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 74/185 (40%), Gaps = 23/185 (12%)

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           +N+++ LT  +   L T+      + R+  ++ L++  GLR+SEA +L    +  +   L
Sbjct: 1   MNDRKHLTSREVERLITATRGSRTELRDRCLILLMFRHGLRVSEACALKLHQVDLESRVL 60

Query: 189 RIQG-----------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
            +             +GD++R      +++  + E   L P           F   R  P
Sbjct: 61  HVARLKKGLSTTHPLRGDELR------AIKAWLTERARLGPAGDTF------FVSERRAP 108

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           LN       IR+      L +    H LRH+    L   G D R IQ  LGH  +  T  
Sbjct: 109 LNRRTAWVAIRRYGELAELSVEAHPHMLRHACGYALADQGADTRLIQDYLGHRNIQHTVR 168

Query: 298 YTNVN 302
           YT  N
Sbjct: 169 YTATN 173


>gi|119488709|ref|ZP_01621718.1| Type 1 fimbriae Regulatory protein fimB [Lyngbya sp. PCC 8106]
 gi|119455132|gb|EAW36273.1| Type 1 fimbriae Regulatory protein fimB [Lyngbya sp. PCC 8106]
          Length = 193

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 15/155 (9%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI-MDDQ--STLRIQGKGDKIRIV--PLLPSVRKA 209
           R++AI+ L++  GLR +E +SL    I ++D     +R++   D    +  P L S+R+ 
Sbjct: 41  RDAAIILLMFRHGLRTAELVSLKWSQIDLNDGYIEIIRVKHGHDSTHPLRAPELRSLRQI 100

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
             +Y +          Q  +F   R  PL+    +  I +     GL  S   H LRH+ 
Sbjct: 101 KRDYPE---------TQY-VFVSERKAPLSTRTIRHIIARAGELAGLKESVYPHQLRHAC 150

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +L S G D R+IQ  LGH  +  T  YT ++ +
Sbjct: 151 GYYLASLGHDTRAIQDYLGHKNIHHTVRYTQMSPQ 185


>gi|134291577|ref|YP_001115346.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134134766|gb|ABO59091.1| phage integrase family protein [Burkholderia vietnamiensis G4]
          Length = 563

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 121/312 (38%), Gaps = 61/312 (19%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +ERG  LS LT      D   +  FL   T  +  +   R     E R F     T  + 
Sbjct: 252 VERGRALSSLTTD----DAIAYRGFLRRPTPRERWVGPSRPRHSIEWRPF-----TGALS 302

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLVDNVLL 143
            RS   +L+ + +  ++L +++    +    +   K  +  PRA L+  +  + V+  L+
Sbjct: 303 PRSAAYALNVLSALFRWLIEQRYVLANPFAGV---KVKSQAPRAGLDVSRGFSEVEWPLI 359

Query: 144 HTSHET-----KWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDDQST---LRIQG 192
            T  +       W       + +LL   Y  GLR SE +S T  +I  D+     L + G
Sbjct: 360 RTLADGLEWSYGWSVPAAQRLRFLLDFGYATGLRASELVSATLADIRRDEHGDHWLHVLG 419

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ-------- 244
           KG K   V L    R A+ +Y         +   LP+   IR  P  P V          
Sbjct: 420 KGGKRGKVTLPALARTALDQYL--------VQRGLPVT-PIRWNPATPLVASLDEDGAHI 470

Query: 245 ---RYIRQLRRYLGLPLST---------------TAHTLRHSFATHLLSNGGDLRSIQSI 286
              R  R LRR+  L                   + H +RH+ A+H L+ G +L  ++  
Sbjct: 471 ESTRLWRVLRRFFVLAADAIHDERPATAEKLRRASPHWMRHTHASHALARGAELVMVRDN 530

Query: 287 LGHFRLSTTQIY 298
           L H  +STT  Y
Sbjct: 531 LRHASISTTSTY 542


>gi|260593377|ref|ZP_05858835.1| putative integrase [Prevotella veroralis F0319]
 gi|260534653|gb|EEX17270.1| putative integrase [Prevotella veroralis F0319]
          Length = 408

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 137/323 (42%), Gaps = 54/323 (16%)

Query: 17  ERQNWLQNLEI------ERGLSKL-TLQSYECDTRQFLIFLAFYTE--EKITIQTIRQLS 67
           ERQ   Q LE+      ERG   L  ++ Y     + + FL ++ +  +K T + IR L+
Sbjct: 80  ERQQNKQTLELAKKIRFERGQELLENVEGYRLKKERDINFLDYFQDYIDKYTKKDIRMLN 139

Query: 68  YT--EIRAFIS-----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
                 + F++     K+ T++I    + + +  I++F +YL+ R +   +  +  R  K
Sbjct: 140 IALRRFKDFLNDTPEYKKFTKRITPEQITKDM--IEAFTEYLQGRSVGEGAKSIYARFKK 197

Query: 121 --------------KSNSLPRALNE----KQALTLVDNVLLHTSHETKWIDARNSAILYL 162
                           N +   +++    K  L+L +   L  +H+ +       A ++ 
Sbjct: 198 VIKYAIEHDVITKNPCNGIVIKVDDQILKKDVLSLDEIQQLIATHDERQNPEIRRAFIFC 257

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR------IVPLLPSVRKAILEYYDL 216
           LY  GLR  +   LT  N+      L+ +    K        I+PL   + + I E    
Sbjct: 258 LYS-GLRYCDVKDLTFANVDYSNKLLKFEQSKTKGHSSSSGVIIPLNDGLLRLIGEPTPA 316

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
              D  +   LP +       +     QR+++      G+    + H  RHSFA ++L+N
Sbjct: 317 QTKDSYI-FNLPSYE------MCLKSLQRWVKSA----GINKHISWHCARHSFAVNILNN 365

Query: 277 GGDLRSIQSILGHFRLSTTQIYT 299
           G +++++ S+LGH  L  T+ YT
Sbjct: 366 GANIKTVASLLGHSGLKHTEKYT 388


>gi|154487275|ref|ZP_02028682.1| hypothetical protein BIFADO_01119 [Bifidobacterium adolescentis
           L2-32]
 gi|154083793|gb|EDN82838.1| hypothetical protein BIFADO_01119 [Bifidobacterium adolescentis
           L2-32]
          Length = 455

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 17/139 (12%)

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQG-------KGDKIRIVPLLPSVRKAILEYYD 215
           +Y CG +   A       I D    + +QG       K  + R VP++P++ +  LE Y 
Sbjct: 280 VYPCGYKRGAACPQWRWRIPDGFDMIELQGRWCLTPPKSKRGRKVPIIPALAQ-TLEAYL 338

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL---GLPLST--TAHTLRHSFA 270
           +   ++  N    LFR   G P+ P   +  I Q RR L   G+P +   + H  RH+  
Sbjct: 339 VDTAEIP-NPHGLLFRHDDGSPIEP---EEDIEQFRRLLEAAGVPNAKHRSRHETRHTVV 394

Query: 271 THLLSNGGDLRSIQSILGH 289
           T L+S G D+  ++ I+GH
Sbjct: 395 TILMSMGVDVGLVEEIVGH 413


>gi|209559468|ref|YP_002285940.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes
           NZ131]
 gi|254799374|sp|B5XLN3|XERS_STRPZ RecName: Full=Tyrosine recombinase xerS
 gi|209540669|gb|ACI61245.1| Tyrosine recombinase xerC [Streptococcus pyogenes NZ131]
          Length = 356

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 131/330 (39%), Gaps = 64/330 (19%)

Query: 12  FELLKERQ---NWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           +E LKE +   +WL + ++ +   ++ + L + E  T++ L     Y  E+ ++ T    
Sbjct: 39  YEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLEAFVLYLRERPSLNT---- 94

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL- 125
                  + +K   + +   ++ R+LS + S  KYL +     +      RN+ K  S  
Sbjct: 95  -------YSTK---EGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTK 144

Query: 126 -------PRALNEKQALTLVDNVLLHTSHETKWID---------------ARNSAILYLL 163
                   RA N KQ L L D  L    +  K  +                R+ AI+ LL
Sbjct: 145 KKKETLASRAENIKQKLFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALL 204

Query: 164 YGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKAIL--------- 211
              G+R+SEA++L  +++   M     +R  GK D + +        ++ L         
Sbjct: 205 LASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDSVNVAGFAKGYLESYLAVRQRRYKA 264

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           E  DL  F       L  +RG+  + ++    ++ + +        +  T H LRH+ AT
Sbjct: 265 EKQDLAFF-------LTEYRGVPNR-MDASSIEKMVGKYSE--DFKIRVTPHKLRHTLAT 314

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            L         +   LGH     T +YT++
Sbjct: 315 RLYDATKSQVLVSHQLGHSSTQVTDLYTHI 344


>gi|163790672|ref|ZP_02185100.1| integrase/recombinase, fragment (putative) [Carnobacterium sp. AT7]
 gi|159874120|gb|EDP68196.1| integrase/recombinase, fragment (putative) [Carnobacterium sp. AT7]
          Length = 183

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 9/151 (5%)

Query: 153 DARNSAILYLL-YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           +A     L+L+    GLR+S+ + L  Q+I+  ++   ++ K  K RI+  L S++  IL
Sbjct: 26  NADRDVFLFLIGINSGLRMSDIVKLKKQDIISSKNPRIVEKKTGKTRIL-YLSSLQDLIL 84

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           +Y        +L  +  LF   +G  +      +  +++ + LG       HTLR +F  
Sbjct: 85  DYTK------DLESEDYLFPSTKGGHVEVNTVYQMFQKVAKLLGRD-DIGTHTLRKTFGY 137

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           H      D+ ++  I GH     T+ Y  +N
Sbjct: 138 HYYKKTKDVATLMEIFGHSSEKITKRYIGIN 168


>gi|329955587|ref|ZP_08296495.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
 gi|328525990|gb|EGF53014.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
          Length = 330

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 66/308 (21%), Positives = 126/308 (40%), Gaps = 65/308 (21%)

Query: 19  QNWLQNLEIERGLSKLTLQSYEC--DTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           Q +L   +IE G S+ T+  Y+   DT    +F+A         + +  ++  +IR ++S
Sbjct: 57  QAYLSAKKIE-GCSEKTIGYYQSTIDT----LFVA-------VCKPVCDVTTNDIRNYLS 104

Query: 77  ----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
               +R+  ++   +++R  S   SF  +L+      +S +  +  ++  + +   L ++
Sbjct: 105 GYQEQRKVSRVTIDNMRRIFS---SFFAWLEDEDFIVKSPVRRIHRVRTESLVKEVLTDE 161

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L D+            + R+ A++ LL   G+R+ E ++L  ++I   +    + G
Sbjct: 162 NMEVLRDSCQ----------EIRDIAMIDLLASTGMRVGELVNLNREDIDFHERQCVVFG 211

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF--------- 243
           KG+K R             E Y    F+    I L  +   R    NP +F         
Sbjct: 212 KGNKER-------------EVY----FNARTKIHLQNYLSSRTDD-NPALFVSLSNPHSR 253

Query: 244 ------QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
                 +  +R L R + +      H  R + AT  +  G  +  +Q +LGH ++ TT  
Sbjct: 254 LSISGVEVRLRTLGRKVNIA-KVHPHKFRRTLATMAIDKGMPIEQVQRLLGHVKIDTTLH 312

Query: 298 YTNVNSKN 305
           Y  VN  N
Sbjct: 313 YAMVNQNN 320


>gi|303235730|ref|ZP_07322337.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302484177|gb|EFL47165.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 422

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 75/162 (46%), Gaps = 26/162 (16%)

Query: 167 GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVRKAILEYY--DLCPFD 220
           GL   +   L P++I    D    +RI+ +   +  I+PLLP + K IL  Y  D    D
Sbjct: 257 GLARVDMQRLKPKHITHNADGTEEIRIKRQKTNVEAIIPLLP-IAKQILSLYIKDKKADD 315

Query: 221 L---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSN 276
           L   NL I+   F  +     N G     I Q+ + L      T H  RH+F+T + LSN
Sbjct: 316 LIFPNLTIRKASFACV-----NIG----QICQIEKGL------TFHMARHTFSTTICLSN 360

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           G  + ++  +LGH  + TTQIY  +      + M  + D+ H
Sbjct: 361 GISMETLSKMLGHSNIGTTQIYGKITDHKIQEDMTALTDREH 402


>gi|291542119|emb|CBL15229.1| Site-specific recombinase XerD [Ruminococcus bromii L2-63]
          Length = 310

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 15/177 (8%)

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P+ LN+ +   L+D++ L       W        + L+   G+R SEAL+LTP++    +
Sbjct: 116 PKFLNQYELHKLLDDLNLTEQINMDWF-------ILLIAKTGMRFSEALALTPKDFDLSR 168

Query: 186 STLRIQGKGDKIRIVPLLP-----SVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLN 239
             L +    D       LP     SVRK  L++  +  F   L   LP  + I   K + 
Sbjct: 169 QLLSVSKTWDYKGNGGFLPTKNESSVRKIPLDWQTVIQF-AELIKHLPEDKPIFVSKKVY 227

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
                  + +  R   +P+  + H LRH+ A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 228 NSTANSILAKHCRNAEVPI-ISIHGLRHTHASLLLFAGVSIASVARRLGHSNMTTTQ 283


>gi|251796688|ref|YP_003011419.1| site-specific tyrosine recombinase XerS [Paenibacillus sp. JDR-2]
 gi|247544314|gb|ACT01333.1| integrase family protein [Paenibacillus sp. JDR-2]
          Length = 348

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 110/295 (37%), Gaps = 56/295 (18%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           I ++ +   S    R F++          ++ R LS ++S   YL +     E   L  R
Sbjct: 53  IELERLHMDSIDTFRMFLATNPNHSNTRTTITRKLSSLRSLFHYLSQIAEDEEFYPLLKR 112

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLL------------HTSHETKWID------------ 153
           N+    S+ R    K     ++  LL            H  +E    +            
Sbjct: 113 NVMAKVSIKRTHKPKDTAAKLEGKLLQEEEIYEFLAYIHADYEKDVAENKQALYSYQLNR 172

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--QGKGDKIRIVPLLPSVRKAIL 211
            R+S I+ L+   GLR+SE ++L   +I   +    +  +GK D     P+    R+  +
Sbjct: 173 TRDSCIISLILHSGLRVSEIVNLNTDDIDVKKKLAYVYRKGKNDDTFKTPVY--FRQEAV 230

Query: 212 EYYDLCPFDLNLNIQL------------PLFRGI-----RGKPLNPGVFQRYIRQLRRYL 254
           +       DL   +Q+             LF  I      G  +     Q  + +  +  
Sbjct: 231 D-------DLTAYLQMRDSHYKAPKREKALFLAIANGKKEGSRMTKRAIQEMVIKYAKRF 283

Query: 255 GLPLSTTAHTLRHSFAT-HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           G P   + H LRHSFAT + L N  D+   Q  LGH    TTQIY ++  K   +
Sbjct: 284 GKPY-LSVHKLRHSFATDYYLRN--DIYMTQEQLGHASPETTQIYAHLTDKTMAE 335


>gi|229892113|sp|Q48TG2|XERS_STRPM RecName: Full=Tyrosine recombinase xerS
          Length = 356

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 128/330 (38%), Gaps = 64/330 (19%)

Query: 12  FELLKERQ---NWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           +E LKE +   +WL + ++ +   ++ + L + E  T++ L     Y  E+ ++ T    
Sbjct: 39  YEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLEAFVLYLRERPSLNTYST- 97

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL- 125
                         + +   ++ R+LS + S  KYL +     +      RN+ K  S  
Sbjct: 98  -------------KEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTK 144

Query: 126 -------PRALNEKQALTLVDNVLLHTSHETKWID---------------ARNSAILYLL 163
                   RA N KQ L L D  L    +  K  +                R+ AI+ LL
Sbjct: 145 KKKETLASRAENIKQKLFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALL 204

Query: 164 YGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKAIL--------- 211
              G+R+SEA++L  +++   M     +R  GK D + +        ++ L         
Sbjct: 205 LASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDSVNVAGFAKGYLESYLAVRQRRYKA 264

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           E  DL  F       L  +RG+  + ++    ++ + +        +  T H LRH+ AT
Sbjct: 265 EKQDLAFF-------LTEYRGVPNR-MDASSIEKMVGKYSE--DFKIRVTPHKLRHTLAT 314

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            L         +   LGH     T +YT++
Sbjct: 315 RLYDATKSQVLVSHQLGHSSTQVTDLYTHI 344


>gi|227357956|ref|ZP_03842298.1| fimbriae recombinase [Proteus mirabilis ATCC 29906]
 gi|227161691|gb|EEI46723.1| fimbriae recombinase [Proteus mirabilis ATCC 29906]
          Length = 205

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 13/171 (7%)

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIR 198
           N +L  + E ++ + R+  +  + +  G R+SE  +LT  +I  +   L ++  KG    
Sbjct: 30  NAILKQAKEGRYPE-RDYCMFLMCFLHGFRVSELCNLTLSDIDLESRILYVRRLKGGLST 88

Query: 199 IVPLLPSVRKAILEYYDLCPF-----DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
             P++        EY  LC +     +   +    +F   +  P++       +R+L + 
Sbjct: 89  TQPIIDE------EYEALCNWLKSRENWRESDSEWVFLSQKTGPISRQQVYGLLRRLGKK 142

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             + +S   H LRH+    L   G D R IQ  LGH  +S T IYT  NSK
Sbjct: 143 ANVSISPHPHMLRHACGYALADLGRDTRLIQDYLGHRNISHTVIYTASNSK 193


>gi|294630761|ref|ZP_06709321.1| traSA:integrase fusion protein [Streptomyces sp. e14]
 gi|292834094|gb|EFF92443.1| traSA:integrase fusion protein [Streptomyces sp. e14]
          Length = 437

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 40/167 (23%)

Query: 162 LLYGCGLRISEALSLTPQNI------MDDQSTLRIQG--------KGDKIRIVPLLPSVR 207
           L +GCGLR  E      ++I      +     +R+ G        KG+KIR VPL P+  
Sbjct: 216 LAFGCGLRQGEVFGFAVEDIDFKTGWIHVNRQVRLVGTKPVFALPKGNKIRSVPL-PAQL 274

Query: 208 KAILEYY--DLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQ--RYIRQLR--- 251
            A L+ +  +  P ++ L    P         LF   +G+  N  VF    + R L    
Sbjct: 275 AAALKAHMKEFPPVEVTLPWTKPDGEPKTFRLLFVDAKGRAYNRSVFNMGDWKRALAAAG 334

Query: 252 ---------RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
                    RYL        H LRH++A+ L+  G  ++++   LGH
Sbjct: 335 VIPPRERGARYLQAAPEDGMHALRHAYASVLMDAGESIKALSEYLGH 381


>gi|309778493|ref|ZP_07673388.1| putative site-specific recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308913748|gb|EFP59593.1| putative site-specific recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 352

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 7/133 (5%)

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K  ++R VP+  ++  A+  Y    P  L  +   PLFR   G  + P     +  +L  
Sbjct: 222 KSSRVRRVPMNETLYAALNVYLATMPKQLKADEHAPLFRTSGGNVMEPRRITYHFHKLLE 281

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM-- 310
              +      H+LRH+FAT  L  G  ++   ++LGH   ++T I  N+ +    D +  
Sbjct: 282 RAEIQ-GIHFHSLRHTFATRALEAGIPMKYCSAMLGH---ASTAITENLYAHASEDQLKK 337

Query: 311 -MEIYDQTHPSIT 322
            ++  D +HP + 
Sbjct: 338 EIKKLDASHPPVC 350


>gi|299141180|ref|ZP_07034317.1| integrase [Prevotella oris C735]
 gi|298577140|gb|EFI49009.1| integrase [Prevotella oris C735]
          Length = 409

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 85/195 (43%), Gaps = 36/195 (18%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLT 177
           K  N LP+AL+ ++AL  +  VL     E +   AR+      L+ C  G    + + L+
Sbjct: 217 KGDNKLPKALD-REALDKL-KVLRFEDLEEEMETARD----IFLFACYVGAAYCDLMELS 270

Query: 178 PQNIM-DDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD-----LCPFDLNLNIQLP 228
             +++ DD+ +L ++    K  +   V LLP   + I  ++      L PF    N    
Sbjct: 271 KSHLVRDDEGSLWLKFNRQKTGVLCRVKLLPEAIRLIERFHSDERETLLPFIKYKN---- 326

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSIL 287
                         +Q  ++ LR   G+    T HT RH+FAT + L  G  + ++  +L
Sbjct: 327 --------------YQSCLKALRLRAGISFPFTTHTARHTFATLITLEQGVPIETVSKML 372

Query: 288 GHFRLSTTQIYTNVN 302
           GH  +S T+ Y  V 
Sbjct: 373 GHSNISMTERYAKVT 387


>gi|224027003|ref|ZP_03645369.1| hypothetical protein BACCOPRO_03762 [Bacteroides coprophilus DSM
           18228]
 gi|224020239|gb|EEF78237.1| hypothetical protein BACCOPRO_03762 [Bacteroides coprophilus DSM
           18228]
          Length = 407

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 31/46 (67%)

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           LG+  + TAH  RH+F  +++++G  + SI  ++GH  LS+TQ+Y 
Sbjct: 329 LGITENLTAHVARHTFGVNMVTSGISMESIAKMMGHSSLSSTQVYA 374


>gi|325857601|ref|ZP_08172537.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483107|gb|EGC86089.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 409

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 85/195 (43%), Gaps = 36/195 (18%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLT 177
           K  N LP+AL+ ++AL  +  VL     E +   AR+      L+ C  G    + + L+
Sbjct: 217 KGDNKLPKALD-REALDKL-KVLRFEDLEEEMETARD----IFLFACYVGAAYCDLMELS 270

Query: 178 PQNIM-DDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD-----LCPFDLNLNIQLP 228
             +++ DD+ +L ++    K  +   V LLP   + I  ++      L PF    N    
Sbjct: 271 KSHLVRDDEGSLWLKFNRQKTGVLCRVKLLPEAIRLIERFHSDERETLLPFIKYKN---- 326

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSIL 287
                         +Q  ++ LR   G+    T HT RH+FAT + L  G  + ++  +L
Sbjct: 327 --------------YQSCLKALRLRAGISFPFTTHTARHTFATLITLEQGVPIETVSKML 372

Query: 288 GHFRLSTTQIYTNVN 302
           GH  +S T+ Y  V 
Sbjct: 373 GHSNISMTERYAKVT 387


>gi|322378855|ref|ZP_08053276.1| integrase/recombinase (XerD) [Helicobacter suis HS1]
 gi|322380172|ref|ZP_08054408.1| integrase/recombinase XerD [Helicobacter suis HS5]
 gi|321147402|gb|EFX42066.1| integrase/recombinase XerD [Helicobacter suis HS5]
 gi|321148718|gb|EFX43197.1| integrase/recombinase (XerD) [Helicobacter suis HS1]
          Length = 364

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 127/277 (45%), Gaps = 31/277 (11%)

Query: 46  FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KK 104
           FL F+ F T+  I +++ + L+  ++ +F+ +   Q     S+ + +  ++ F  YL +K
Sbjct: 89  FLFFVHFKTQ--IKLKSFKSLTEEQVISFLFEL-AQTRKPSSMAKYVMYLRQFFNYLDRK 145

Query: 105 RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLY 164
           R    + ++ N+   K + +LP+ LN +     +  +L + +  +   + RN  IL L+ 
Sbjct: 146 RGYHFDFSLKNLAFAKTTQTLPKHLNAQDLKAFIKTLLNYQARSS--YEKRNKCILLLVI 203

Query: 165 GCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILE--YYDLCPFD 220
             GLR SE L+L  +NI  ++   ++ + GK  K R       +RK+ILE   +D     
Sbjct: 204 LGGLRKSEVLNLELKNIKPEEQNYSILVMGKNRKERK----AYIRKSILEQALHDW---- 255

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG--LPLS---------TTAHTLRHSF 269
           ++   +L  F G+           +   QL+ ++     LS         T  H  RHSF
Sbjct: 256 ISDAKRLQHFNGVF--LFKKATLSQRTCQLKNFIAKIFKLSNIKHSQAYGTGLHLFRHSF 313

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           AT +     DL      LGH  L +T+IY +   ++ 
Sbjct: 314 ATLIYQETQDLVLTSRALGHNSLLSTKIYIHTTQEHN 350


>gi|255280833|ref|ZP_05345388.1| putative phage integrase/recombinase [Bryantella formatexigens DSM
           14469]
 gi|255268770|gb|EET61975.1| putative phage integrase/recombinase [Bryantella formatexigens DSM
           14469]
          Length = 280

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 119/294 (40%), Gaps = 36/294 (12%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +L+E +N L+  E     ++ T++ Y  D   F      Y +E   I     ++Y E   
Sbjct: 9   MLQEFRNQLKAEE----KAQATIEKYMRDVSAFFA----YAKEGSEIDKYTVIAYKEYL- 59

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
                 T      S+   L+ + SFLK +   + T ++  +     +   +  R L + +
Sbjct: 60  ------TGHYAAASVNSMLAAVNSFLKAMGWHECTVKALKIQKEAFR---ARERDLTKGE 110

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D      +    WI       + +L   G+R+SE   +T   +    +T+  +GK
Sbjct: 111 YFRLLDAAKKKKNLRLYWI-------MQVLCATGIRVSELRYITVDALQTGCATVSSKGK 163

Query: 194 GDKIRI-VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
              + +  PL   +RK     Y +C   +  N    +F    GKP++       ++ L  
Sbjct: 164 QRTVLLPAPLCRKLRK-----YIVCQ-KITGN---SIFVTRSGKPVDRSNICHDMKALCG 214

Query: 253 YLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             G+       H LRH FA        DL  +  +LGH  ++TT+IYT  +S+ 
Sbjct: 215 EAGICREKVFPHNLRHLFAVTYYKMKKDLSHLADLLGHASINTTRIYTLASSEE 268


>gi|306824504|ref|ZP_07457850.1| phage integrase family integrase/recombinase [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
 gi|304433291|gb|EFM36261.1| phage integrase family integrase/recombinase [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
          Length = 434

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 21/173 (12%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQG----------KGDKIRIV 200
           I  ++  + YL +  G R SE  +L  ++I   +S ++ IQ           KG+K  I 
Sbjct: 246 ITLKDYVLFYLTFFLGDRKSETYALQWKHIDFSKSQIQLIQALDRYGQVKSTKGNKKTIF 305

Query: 201 PLLPSVRKAILEY-----YDLCPFDLNLNIQLPLF-----RGIRGKPLNPGVFQRYIRQL 250
            +   + + +  +     Y+L  F +  N +  +F     RG   KPL+       ++ +
Sbjct: 306 SISNDLLQLLTSWKEQQKYELAKFGIISNPEQFVFTYIDTRGNINKPLHADYLNNKMKSI 365

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           R+        T H LRH+ AT     G  L +I   L H    TTQIY N ++
Sbjct: 366 RKRHKELAHATPHKLRHTGATLAKQAGMSLEAISEALTHSDTGTTQIYVNTSN 418


>gi|309808160|ref|ZP_07702071.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
 gi|308168596|gb|EFO70703.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
          Length = 329

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 52/251 (20%), Positives = 107/251 (42%), Gaps = 25/251 (9%)

Query: 61  QTIRQLSYTEIRAFISK----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           + +R++   ++R ++++    + + K+   +++R LS   SF  +L+      +S    +
Sbjct: 88  KNVREMETDDLRTYLTEYQHEKNSSKVTVDNIRRILS---SFFSWLEDENYILKSPARRI 144

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             +K + ++     ++    + D+            + R+ A++ +L   G+R+ E + L
Sbjct: 145 HKVKAALTIKETYTDEALEKMRDSCE----------EPRDLALIDILASTGMRVGELVLL 194

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG- 235
              +I  ++    + GKG K R+V      +  +L Y      D        LF  +R  
Sbjct: 195 NRDDINFEERECVVFGKGSKERMVYFDARTKIHLLTYLQGRTDD-----NPALFVSLRAP 249

Query: 236 -KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            + L  G  +  +R+L   L +      H  R + AT  +  G  +  +Q +LGH R+ T
Sbjct: 250 HERLRIGGVECRLRELGNKLNIE-KVHPHKFRRTLATMAIDKGMPIEQLQQLLGHKRIDT 308

Query: 295 TQIYTNVNSKN 305
           T  Y  V   N
Sbjct: 309 TLQYAMVKQSN 319


>gi|255036128|ref|YP_003086749.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254948884|gb|ACT93584.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 415

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 15/127 (11%)

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           TL+ Q K D    +PLL S  K + +Y D   C     L   LP+   +  + +N     
Sbjct: 282 TLKRQ-KTDTASRIPLLDSAAKILDKYKDHAQCAVADQL---LPV---LSNQKMNS---- 330

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            Y++++     +  + T H  RH+FAT + L+NG  + S+  +LGH  + TTQ Y  V  
Sbjct: 331 -YLKEIGDLCHIDRNITFHLARHTFATTVTLANGVAIESVSKVLGHKNIRTTQHYAKVID 389

Query: 304 KNGGDWM 310
           K  G+ M
Sbjct: 390 KKVGEDM 396


>gi|116254510|ref|YP_770346.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115259158|emb|CAK10273.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 305

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 118/300 (39%), Gaps = 42/300 (14%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           Q L + R L    LQ+ E   R F+ +     E ++T +T    +            + +
Sbjct: 9   QYLTLRRSLG-FKLQTQESRLRNFVRYATALGELRVTAKTAVDWA------------SHQ 55

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL--NEKQALTLVDN 140
            G  +    LS +++F ++L+     TE   +   ++      PR    +++Q   L+ +
Sbjct: 56  CGPATWSSRLSTVRAFARHLQVVDPQTE---IPPPHIFPPQRRPRPFIYSDEQVADLLKS 112

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRI 199
           +L    H   +        L LL   GLR SEA  L  ++   D   L I + K  K RI
Sbjct: 113 ML--DLHPGSFRGPTYHYFLGLLASTGLRFSEAARLLREDADLDAGMLTIRETKFGKTRI 170

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL---NPGVF------QRYIRQL 250
           VPL PS   A+  Y  +        +    F G  G+PL   NP         Q  +RQ 
Sbjct: 171 VPLHPSTTLALGRYAAIRDDHPVRRVSQFFFTGDLGRPLIHANPHFSFILWTRQAGLRQP 230

Query: 251 RRYLGLPLSTTAHTLRHSFATHLL----SNGGD----LRSIQSILGHFRLSTTQIYTNVN 302
            +  G       H LRH+FA   L     +G D    L  + + LGH  +S T  Y   +
Sbjct: 231 EQRDG----PRIHDLRHTFAVRTLLSWYRDGEDTERRLPELSTYLGHNYVSATYWYLTAH 286


>gi|97954418|emb|CAJ43593.1| integrase [Enterobacteria phage PhiD145]
          Length = 331

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 26/40 (65%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             H LRH+FATH + NGG++ ++Q ILGH  +  T  Y +
Sbjct: 269 AVHVLRHTFATHFIMNGGNIITLQRILGHSHIQQTMTYAH 308


>gi|320334433|ref|YP_004171144.1| integrase family protein [Deinococcus maricopensis DSM 21211]
 gi|319755722|gb|ADV67479.1| integrase family protein [Deinococcus maricopensis DSM 21211]
          Length = 317

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 58/145 (40%), Gaps = 24/145 (16%)

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNL 223
            GLR+SEALSLT  ++   + T  + GKG K+R+ PL   VR+A+       P D     
Sbjct: 184 TGLRVSEALSLTWADVTPTRVT--VHGKGGKVRVAPLGRRVREALAALVRGAPADRLFTW 241

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQL---RRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
           +    ++R            Q+  R       + G       H  R    T L +   D 
Sbjct: 242 SYHQAVYR-----------MQKAFRAAGCGEAWRGF------HAARKHSGTRLYAATKDF 284

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKN 305
             +   LGH  + TT+ Y  V   +
Sbjct: 285 TRVGLFLGHSSVDTTRRYVAVQEDD 309


>gi|327398855|ref|YP_004339724.1| integrase family protein [Hippea maritima DSM 10411]
 gi|327181484|gb|AEA33665.1| integrase family protein [Hippea maritima DSM 10411]
          Length = 370

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 22/155 (14%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYY--- 214
           + YL    G+R  E  +LT Q+I      + I+  K  + R+  +  S+R  +   Y   
Sbjct: 210 MAYLSLYTGMRFGEIANLTWQDIDFQNGIITIKDPKNSESRVAYMTDSLRDLLYAKYKRE 269

Query: 215 ---DLCPFDLNLNIQLPLFRGIRGKPLN--PGVFQRYIRQLRRYLGL--PLSTTA-HTLR 266
              +   F  + N          GKP    PG F+  +R+L    G+  P      HTLR
Sbjct: 270 KPKNSSGFVFHRN----------GKPYKQIPGTFKTVVRKLGLNDGITDPRDKVVFHTLR 319

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H+FA+ L   G  + +I+ ++GH  L+ T+ Y+++
Sbjct: 320 HTFASWLAIQGTPIYTIKELMGHKTLAMTERYSHL 354


>gi|153805897|ref|ZP_01958565.1| hypothetical protein BACCAC_00137 [Bacteroides caccae ATCC 43185]
 gi|149130574|gb|EDM21780.1| hypothetical protein BACCAC_00137 [Bacteroides caccae ATCC 43185]
          Length = 452

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 18/151 (11%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSV----------R 207
             +  + CGLR+ + ++L   +I  ++  LR I  K +K  ++PL              R
Sbjct: 279 FFFAFHACGLRVVDVMTLQWGHINFEKKELRKIMIKTNKRHVIPLTEQAISILRQWQEKR 338

Query: 208 KAILEYYDLCPFDLNLNIQLPLF--RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           +     ++L   +L+L+    L+  R    K +N  +       +   +GLP + + H  
Sbjct: 339 EGCKYVFNLVKEELDLDDAEALYKARNNATKCINQSLVV-----VGEQIGLPFNLSMHVA 393

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           RHSFA   L+ G  +  +  +LGH     T+
Sbjct: 394 RHSFAVFALNKGLSMTVVSRLLGHGSTDVTE 424


>gi|330997655|ref|ZP_08321500.1| hypothetical protein HMPREF9442_02600 [Paraprevotella xylaniphila
           YIT 11841]
 gi|329570183|gb|EGG51923.1| hypothetical protein HMPREF9442_02600 [Paraprevotella xylaniphila
           YIT 11841]
          Length = 68

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 30/39 (76%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H  RHS+A+ LL NG D+ +I+S++GH  + TTQIYT++
Sbjct: 11  HCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHL 49


>gi|323344120|ref|ZP_08084346.1| integrase [Prevotella oralis ATCC 33269]
 gi|323094849|gb|EFZ37424.1| integrase [Prevotella oralis ATCC 33269]
          Length = 416

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 81/187 (43%), Gaps = 26/187 (13%)

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMD 183
           P+AL+ +    + D V+    H    I AR+      L+ C  G   ++A+S+T  N+  
Sbjct: 230 PKALSRESFEKIRDLVI--PEHHASHILARD----LFLFACYTGTAYADAVSVTRDNLFT 283

Query: 184 DQST---LRIQGKGDKIR-IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           D +    L+ + K +++R  V LLP     I +Y D     L   +  P  R        
Sbjct: 284 DDNGGLWLKYRRKKNELRACVKLLPEALALIEKYRDDDRPTLFPMLHYPNMR-------- 335

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIY 298
                R ++ L     +    T H  RHSFA+ + L  G  + +I  +LGH  L TTQ+Y
Sbjct: 336 -----RLMKCLAVLADIREDLTYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQVY 390

Query: 299 TNVNSKN 305
             V  K 
Sbjct: 391 AKVTPKK 397


>gi|301163976|emb|CBW23531.1| putative bacteriophage intragrase [Bacteroides fragilis 638R]
          Length = 405

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 26/163 (15%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI-----VPLLPSVRKAILEYY 214
            L+GC  GL   +  +LTP++   D S  RI  K  +++      +PLLP + K IL+ Y
Sbjct: 252 FLFGCFTGLSYIDIKTLTPEHFEKD-SAGRIWIKKRRVKTGVLSRIPLLP-IAKLILDKY 309

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                            G +  P+ +P    +Y++ +    G+      HT RH+FA+ +
Sbjct: 310 K---------------GGEKLLPIQDPADINKYLKDIAILCGINKRICFHTSRHTFASTV 354

Query: 274 -LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            L+N   L  +  +LGH     T  Y  +  K  G+ M ++ D
Sbjct: 355 TLANNISLEVVSKMLGHTNTRMTAHYAKLIDKCIGEQMDKLMD 397


>gi|288927977|ref|ZP_06421824.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330811|gb|EFC69395.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 409

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 85/195 (43%), Gaps = 36/195 (18%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLT 177
           K  N LP+AL+ ++AL  +  VL     E +   AR+      L+ C  G    + + L+
Sbjct: 217 KGDNKLPKALD-REALDKL-KVLRFEDLEEEMETARD----IFLFACYVGAAYCDLMELS 270

Query: 178 PQNIM-DDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD-----LCPFDLNLNIQLP 228
             +++ DD+ +L ++    K  +   V LLP   + I  ++      L PF    N    
Sbjct: 271 KSHLVRDDEGSLWLKFNRQKTGVLCRVKLLPEAIRLIERFHSDERETLLPFIKYKN---- 326

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSIL 287
                         +Q  ++ LR   G+    T HT RH+FAT + L  G  + ++  +L
Sbjct: 327 --------------YQSCLKALRLRAGISFPFTTHTARHTFATLITLEQGVPIETVSKML 372

Query: 288 GHFRLSTTQIYTNVN 302
           GH  +S T+ Y  V 
Sbjct: 373 GHSNISMTERYAKVT 387


>gi|256829123|ref|YP_003157851.1| integrase family protein [Desulfomicrobium baculatum DSM 4028]
 gi|256578299|gb|ACU89435.1| integrase family protein [Desulfomicrobium baculatum DSM 4028]
          Length = 392

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 243 FQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            +R  R+LR   GLP      H LRH FA+HL S+G  L  + ++L H  LS T+ Y ++
Sbjct: 302 MRRMGRRLRDKAGLPADFRPVHGLRHHFASHLASSGASLYEVGTLLTHGDLSVTKRYAHL 361

Query: 302 NSK 304
           + +
Sbjct: 362 SDQ 364


>gi|222529994|ref|YP_002573876.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222456841|gb|ACM61103.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 392

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 3/68 (4%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G P+ P  F R   ++    GL ++   H LRH+FAT LL    + + +Q +LGH  +ST
Sbjct: 305 GTPIEPRNFLRTFYRITEKAGLNIN--FHALRHTFATRLLEANTNPKVVQELLGHSDIST 362

Query: 295 T-QIYTNV 301
           T  IY++V
Sbjct: 363 TLNIYSHV 370


>gi|167628713|ref|YP_001679212.1| phage integrase, putative [Heliobacterium modesticaldum Ice1]
 gi|167591453|gb|ABZ83201.1| phage integrase, putative [Heliobacterium modesticaldum Ice1]
          Length = 326

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 60/269 (22%), Positives = 98/269 (36%), Gaps = 45/269 (16%)

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +T+ +  ++  ++LS +K F+KYL   KI                 LP+   E       
Sbjct: 61  KTRDVSMKTKIKNLSHVKGFVKYLASLKIEASCP-----------ELPKMQQEYVPYVFS 109

Query: 139 DNVLLHTSHETKWIDARNS---------AILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           D  +          +ARNS          +L +LYGCGLR+ E  SL   +   +   L 
Sbjct: 110 DAEIKRIVSAADNFEARNSLTRSVLVFPVLLRILYGCGLRLGEGRSLCWTDADLENGVLT 169

Query: 190 I-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           I + K  K R VP+  S+   + +Y  +   D      L       GKP     F  +  
Sbjct: 170 IREAKNLKQRFVPMDDSLTNFLKDYKKMTHSDGICREYLFESDLHPGKPFKNNTFYEWFT 229

Query: 249 QLRRYLGLPLS--------TTAHTLRHSFA-THLLSNGGDLRSIQ-------SILGHFRL 292
           ++ +   +  +           H LRH F     L +  + R  +       + LGH   
Sbjct: 230 RVLKVADVNYAKLNNRKRGPCPHCLRHCFTLKSFLKSDNEGRRFEDTAPFLAAYLGHDSA 289

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
             T+ Y   N          +Y+Q+H  +
Sbjct: 290 KETEAYLRSNHT--------VYEQSHQRV 310


>gi|150010186|ref|YP_001304929.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149938610|gb|ABR45307.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 310

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           G F R ++ L   +G+    T++T+RHSFAT L      +  I  +LGH  + TTQIY
Sbjct: 225 GGFNRRLKTLSESIGIRTRVTSYTIRHSFATTLKEQNVPIEMISELLGHKSIKTTQIY 282


>gi|73920478|sp|Q5XC26|XERS_STRP6 RecName: Full=Tyrosine recombinase xerS
          Length = 356

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 128/330 (38%), Gaps = 64/330 (19%)

Query: 12  FELLKERQ---NWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           +E LKE +   +WL + ++ +   ++ + L + E  T++ L     Y  E+ ++ T    
Sbjct: 39  YEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLEAFVLYLRERPSLNTYST- 97

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL- 125
                         + +   ++ R+LS + S  KYL +     +      RN+ K  S  
Sbjct: 98  -------------KEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTK 144

Query: 126 -------PRALNEKQALTLVDNVLLHTSHETKWID---------------ARNSAILYLL 163
                   RA N KQ L L D  L    +  K  +                R+ AI+ LL
Sbjct: 145 KKKETLASRAENIKQKLFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIISLL 204

Query: 164 YGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKAIL--------- 211
              G+R+SEA++L  +++   M     +R  GK D + +        ++ L         
Sbjct: 205 LASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDSVNVAGFAKGYLESYLAVRQRRYKA 264

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           E  DL  F       L  +RG+  + ++    ++ + +        +  T H LRH+ AT
Sbjct: 265 EKQDLAFF-------LTEYRGVPNR-MDASSIEKMVGKYSE--DFKIRVTPHKLRHTLAT 314

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            L         +   LGH     T +YT++
Sbjct: 315 RLYDATKSQVLVSHQLGHSSTQVTDLYTHI 344


>gi|116627800|ref|YP_820419.1| site-specific tyrosine recombinase XerS [Streptococcus thermophilus
           LMD-9]
 gi|122267603|sp|Q03KP9|XERS_STRTD RecName: Full=Tyrosine recombinase xerS
 gi|116101077|gb|ABJ66223.1| tyrosine recombinase XerC subunit [Streptococcus thermophilus
           LMD-9]
          Length = 356

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 115/284 (40%), Gaps = 45/284 (15%)

Query: 58  ITIQTIRQLSYTEIRAFI----------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI 107
           I I+T+  L+  ++ +F+          +  + Q +   ++ R+LS + S  KYL +   
Sbjct: 66  IHIKTLENLTKKDMESFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVE 125

Query: 108 TTESNILNMRNLKKSNSL--------PRALNEKQALTLVDNVL-----LHTSHETKWID- 153
             +      RN+ K  S          RA N KQ L L D  +     +   +E K  + 
Sbjct: 126 GPDGEPYFYRNVMKKISTKKKKETLAARAENIKQKLFLGDETMKFLDYVENEYEVKLSNR 185

Query: 154 ---------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
                     R+ AI+ LL   G+R+SEA++L  ++I      + +  KG +   V +  
Sbjct: 186 AKSSFYKNKERDLAIIALLLSSGVRLSEAVNLDLKDINLKMMVIDVTRKGGQRDSVNMAS 245

Query: 205 SVRKAILEY-------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
             R  +  Y       Y     D+ L   L  +RG+  + ++    ++ + +  +     
Sbjct: 246 FARPYLENYLSIRNKRYKAEKQDVALF--LTEYRGVPNR-IDASSIEKMVGKYSQ--DFK 300

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T H LRH+ AT L         +   LGH     T +YT++
Sbjct: 301 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHI 344


>gi|313143229|ref|ZP_07805422.1| integrase/recombinase [Helicobacter cinaedi CCUG 18818]
 gi|313128260|gb|EFR45877.1| integrase/recombinase [Helicobacter cinaedi CCUG 18818]
          Length = 262

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 102/247 (41%), Gaps = 49/247 (19%)

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK----KSNSLPRALNEKQAL 135
           T+++   ++ +    I  FL++L ++ I T    +N++ +     K   LP  LN+ Q  
Sbjct: 30  TKRLKISTINQHYRMISLFLRFLAQKGINT----INLKGIHMSFLKDKKLPSFLNDFQYK 85

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGK 193
             ++ V +     T        A+L++ Y  G+R  E   +   +I ++  Q  ++I+GK
Sbjct: 86  QFLNEVKM-LEENTLKDKIHKLALLFVAY-TGIRRRELGHICKNDIQENATQYIIKIKGK 143

Query: 194 GDKIRIVPLLPSV------------------RKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
             + R V +  S                    + +  Y    P   NL+IQ P+      
Sbjct: 144 CSQERFVSIKKSFVGNLLNDLLEHRENMGLNHQYVFSYKKDKP---NLHIQTPM------ 194

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           KP+   +    IR              H LRHSFA+ +     D+   Q  LGH  L+ T
Sbjct: 195 KPILQKIKAVQIR----------GNNLHLLRHSFASFVYRESRDILLTQKALGHASLNNT 244

Query: 296 QIYTNVN 302
           QIY ++N
Sbjct: 245 QIYVHMN 251


>gi|265755606|ref|ZP_06090227.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263234212|gb|EEZ19805.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 386

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 10/89 (11%)

Query: 230 FRGIRGKPLNP---------GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
           +RG+    ++P         G  +  ++++    G  +  + H  RH+FAT  L+ G  L
Sbjct: 282 YRGVNESKVSPDRVFPVGDVGSMESSLKRIGEKAGCSVRVSPHVGRHTFATLALNKGMPL 341

Query: 281 RSIQSILGHFRLSTTQIYTN-VNSKNGGD 308
            ++Q +LGH  + +TQ+Y   +N K G D
Sbjct: 342 ETLQKVLGHKTIISTQVYAELINPKIGED 370


>gi|150377509|ref|YP_001314104.1| phage integrase family protein [Sinorhizobium medicae WSM419]
 gi|150032056|gb|ABR64171.1| phage integrase family protein [Sinorhizobium medicae WSM419]
          Length = 381

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 121/285 (42%), Gaps = 28/285 (9%)

Query: 17  ERQNWLQNLEI----ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLSYTE 70
           ERQ  L +LE     +RGLS  ++       +  L F A +   +   Q +    L+  +
Sbjct: 105 ERQELLGDLETYLERQRGLSPRSV-------KHVLGFAARFLAHRFGDQMLDLAILNARD 157

Query: 71  IRAFISK--RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLP 126
           + AF+     R     D++L    S ++SF +YL  + + T +  L +  + K     LP
Sbjct: 158 VVAFMEHVIGRKTPYRDKTLS---SHLRSFFQYLFAQGLITTNLSLCVPRVHKPWGARLP 214

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R L+  +    V+ VL   +   +   AR+ A+L L+   G+R  E +++   +I     
Sbjct: 215 RYLSPDE----VEAVLASVATNPRR-GARDYAMLLLMARLGMRAPEVMAVQLDDIDWRAG 269

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            L ++GKG +   +P+   V +AI  Y         +   L   R       +  +    
Sbjct: 270 ELLVRGKGKRHDRLPIPSDVGEAISRYLREERTSTTIRTLLVSHRAPNRPFKDSQIINSI 329

Query: 247 IRQLRRYLGLPLSTT---AHTLRHSFATHLLSNGGDLRSIQSILG 288
           +R+     G+   T    +H LRHS AT+L+ +G  L  I    G
Sbjct: 330 LREAFAATGVKPPTPYVGSHVLRHSLATNLVRSGASLEEIGVCCG 374


>gi|63146891|emb|CAI79475.1| integrase [Lactobacillus delbrueckii subsp. lactis]
          Length = 305

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 70/154 (45%), Gaps = 27/154 (17%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-KIRIVPLLP-----SVRKAILE 212
           ++ L+   GLR SEAL LT ++I  +Q  + +    D K       P     SVRK    
Sbjct: 138 MILLIAKTGLRFSEALGLTKEDIDLEQQMINVDKTWDYKSYTGSFKPTKNSSSVRK---- 193

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR----------YIRQLRRYLGLPLSTTA 262
                P D  L +QL   + I+  P    +F +           +++  + L +P+  + 
Sbjct: 194 ----VPIDWKLAMQLS--QVIQDLPNGESIFAQKRVFNSTVNNLLKKHCKELNIPV-ISV 246

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           H LRH+ A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 247 HGLRHTHASLLLFAGVSIASVAKRLGHADMTTTQ 280


>gi|307149944|ref|YP_003890987.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306986744|gb|ADN18622.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 321

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 4/150 (2%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG---DKIRIVPLLPSVRKAIL 211
           R+ AIL LL+   LR  E      +++  D  +L I GKG    K  I    P+V     
Sbjct: 155 RDYAILRLLWDNALRRGEIEQADIKDLDLDGRSLLILGKGKGQQKQSITLSRPTVEAITQ 214

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
             +     D+N  + + L R   G  L      + +  +    G+    + H +RHS  T
Sbjct: 215 WLHARRELDINQPLFIALDRSSYGHRLTGTAIYKIVESIATGAGITKKLSPHRIRHSSVT 274

Query: 272 HLL-SNGGDLRSIQSILGHFRLSTTQIYTN 300
             L + GGD+R +Q +  H  L+T  IY +
Sbjct: 275 AALDATGGDVRKVQKLSRHADLNTLMIYDD 304


>gi|229071996|ref|ZP_04205206.1| Integrase/recombinase [Bacillus cereus F65185]
 gi|228711155|gb|EEL63120.1| Integrase/recombinase [Bacillus cereus F65185]
          Length = 322

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 84/175 (48%), Gaps = 12/175 (6%)

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDK 196
           N+L      T++I+ R++A + L+Y  G+R+     L  +++  +   LRI G   K  +
Sbjct: 140 NLLFSVLDLTRFIELRDAASVLLMYQTGIRVGTLSQLEHKHVNLENKVLRIDGGIIKNHE 199

Query: 197 IRIVP---LLPSVRKAILEYYDLCPFDLNL-NIQLPLFRG---IRGKPLNPGVFQRYIRQ 249
              +P   +L  V  A+++  D+   + ++ N  L + +    I   P N  + +R  + 
Sbjct: 200 SIHLPFDDVLARVLGALMKQNDIIRKECHVKNDYLFITKNGGRIATSPTNNNITKRLSKH 259

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            + Y GL  +   H LR  FA +LL  G ++  I   LGH  L+ T  Y +++ +
Sbjct: 260 SKDY-GLK-NINPHALRRGFAKNLLKKGANIALISKALGHSDLAVTTRYLHLDKE 312


>gi|189349813|ref|YP_001945441.1| putative integrase/recombinase for integrative and conjugative
           element [Burkholderia multivorans ATCC 17616]
 gi|189333835|dbj|BAG42905.1| putative integrase/recombinase for integrative and conjugative
           element [Burkholderia multivorans ATCC 17616]
          Length = 310

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 72/158 (45%), Gaps = 22/158 (13%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           + +  LL   GLRISEAL L  Q+I  D   + ++ K +K R+VPL  +VR A+  Y  L
Sbjct: 135 ATLFGLLAATGLRISEALRLRLQDITVD-GLMILETKFNKSRLVPLHDTVRAALERY--L 191

Query: 217 CPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIR-------QLRRYLGLPLSTTAHTLRHS 268
                       LF G  GK P   GV   ++R       Q  R  GLP     H LRH+
Sbjct: 192 VVRTRTATSTDALFVGTNGKAPGYRGVKDVFVRLVTVMGLQQARNGGLP---HIHDLRHT 248

Query: 269 FATHLLSN-GGD-------LRSIQSILGHFRLSTTQIY 298
            A   L    GD       + ++ + LGH +++ T  Y
Sbjct: 249 LAVRSLEQFRGDRNAISRHMTALSTYLGHTKVTDTYWY 286


>gi|154500987|ref|ZP_02039025.1| hypothetical protein BACCAP_04674 [Bacteroides capillosus ATCC
           29799]
 gi|150270011|gb|EDM97530.1| hypothetical protein BACCAP_04674 [Bacteroides capillosus ATCC
           29799]
          Length = 361

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 84/220 (38%), Gaps = 49/220 (22%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           +AL E Q    +  V    +++  W+      I  +L G G RI E + L  Q+    + 
Sbjct: 132 KALTESQQSAFISYVSSSPTYK-HWL-----PIFTVLLGTGCRIGEVVGLRWQDCDFAEG 185

Query: 187 TLRIQ-----------GK----------GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
            + I            GK             IRI+P+L  VR  +L+   L   +   N 
Sbjct: 186 IISINHNLVYRKREKTGKMGFHITTPKTSAGIRIIPMLEEVRHTLLQE-RLRQMEDGFND 244

Query: 226 QLP------LFRGIRGKPLNPGVFQRYI---------------RQLRRYLGLPLSTTAHT 264
            +       +F    G+ ++P    R I               +Q +R   L    + H 
Sbjct: 245 TVIDGYSGFIFSSRYGEAISPHCVNRAIERICRDYNAEETLRAKQEKRAPQLLPHFSCHN 304

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           LRH+F T    N  DL+ IQ I+GH  ++TT    N  +K
Sbjct: 305 LRHTFCTRFCENEKDLKVIQEIMGHADITTTMNIYNEATK 344


>gi|323710238|gb|ADY03053.1| putative P2-like integrase [Escherichia coli]
          Length = 95

 Score = 45.8 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 19/112 (16%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G R  EA  L  +NI+ ++ T  ++ K +K R VP+  +V K I +              
Sbjct: 3   GARWGEAARLKAENIIHNRVTF-VKTKPNKPRTVPISEAVAKMIADNK------------ 49

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
               RG      +   F+R ++ ++    LP     H LRHSFATH + NGG
Sbjct: 50  ----RGFLFPDADYPRFRRTMKAIKP--DLPTGQATHALRHSFATHFMMNGG 95


>gi|312193442|ref|YP_003991108.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|311217894|gb|ADP76497.1| integrase family protein [Geobacillus sp. Y4.1MC1]
          Length = 189

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 63/152 (41%), Gaps = 7/152 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR----IQGKGDKIRIVPLLPSVRKAI 210
           R+  +  L    GLRIS+ LSL   ++ + +  +     ++ K  K RIV L    R+ I
Sbjct: 26  RDELLFTLGINTGLRISDILSLKVGDVRNAKGAVERFEIVEKKTKKTRIVALNKKTRRLI 85

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYLGLPLSTTAHTLRHSF 269
             Y  L     N     PLFR  +G          YI  +  + +G+      H+LR +F
Sbjct: 86  ERY--LATERPNARNDEPLFRSQKGGRAISRQHAHYILNRAAKMIGVMERVGTHSLRKTF 143

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                  G DL  IQ +L H   + T  Y  +
Sbjct: 144 GYFAYKQGTDLAMIQKLLNHSSQAETLRYIGI 175


>gi|149920205|ref|ZP_01908677.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149818971|gb|EDM78410.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 392

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 58/134 (43%), Gaps = 22/134 (16%)

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K DKIR +PL   +  A+          L  + +L L+RG  G+ +         RQ  R
Sbjct: 246 KYDKIRTIPLTRRLADAL--------GTLPRDCELVLYRGSEGREIPTS------RQTGR 291

Query: 253 YLGLPLSTTA-------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +       A       HTLRH+F +HL   G   R IQ + GH  L TTQ Y ++ S  
Sbjct: 292 TMLEKAQDAAKLRRRGPHTLRHTFCSHLAMRGAAARVIQQLAGHASLVTTQRYMHL-SPG 350

Query: 306 GGDWMMEIYDQTHP 319
             +  + + +Q  P
Sbjct: 351 ATEAAIALLEQPAP 364


>gi|94992469|ref|YP_600568.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes
           MGAS2096]
 gi|94545977|gb|ABF36024.1| Integrase/recombinase xerD [Streptococcus pyogenes MGAS2096]
          Length = 368

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 128/330 (38%), Gaps = 64/330 (19%)

Query: 12  FELLKERQ---NWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           +E LKE +   +WL + ++ +   ++ + L + E  T++ L     Y  E+ ++ T    
Sbjct: 51  YEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLEAFVLYLRERPSLNTYST- 109

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL- 125
                         + +   ++ R+LS + S  KYL +     +      RN+ K  S  
Sbjct: 110 -------------KEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTK 156

Query: 126 -------PRALNEKQALTLVDNVLLHTSHETKWID---------------ARNSAILYLL 163
                   RA N KQ L L D  L    +  K  +                R+ AI+ LL
Sbjct: 157 KKKETLASRAENIKQKLFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALL 216

Query: 164 YGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKAIL--------- 211
              G+R+SEA++L  +++   M     +R  GK D + +        ++ L         
Sbjct: 217 LASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDSVNVAGFAKGYLESYLAVRQRRYKA 276

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           E  DL  F       L  +RG+  + ++    ++ + +        +  T H LRH+ AT
Sbjct: 277 EKQDLAFF-------LTEYRGVPNR-MDASSIEKMVGKYSE--DFKIRVTPHKLRHTLAT 326

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            L         +   LGH     T +YT++
Sbjct: 327 RLYDATKSQVLVSHQLGHSSTQVTDLYTHI 356


>gi|94988645|ref|YP_596746.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes
           MGAS9429]
 gi|94542153|gb|ABF32202.1| integrase/recombinase [Streptococcus pyogenes MGAS9429]
          Length = 368

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 131/330 (39%), Gaps = 64/330 (19%)

Query: 12  FELLKERQ---NWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           +E LKE +   +WL + ++ +   ++ + L + E  T++ L     Y  E+ ++ T    
Sbjct: 51  YEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLEAFVLYLRERPSLNT---- 106

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL- 125
                  + +K   + +   ++ R+LS + S  KYL +     +      RN+ K  S  
Sbjct: 107 -------YSTK---EGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTK 156

Query: 126 -------PRALNEKQALTLVDNVLLHTSHETKWID---------------ARNSAILYLL 163
                   RA N KQ L L D  L    +  K  +                R+ AI+ LL
Sbjct: 157 KKKETLASRAENIKQKLFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALL 216

Query: 164 YGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKAIL--------- 211
              G+R+SEA++L  +++   M     +R  GK D + +        ++ L         
Sbjct: 217 LASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDSVNVAGFAKGYLESYLAVRQRRYKA 276

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           E  DL  F       L  +RG+  + ++    ++ + +        +  T H LRH+ AT
Sbjct: 277 EKQDLAFF-------LTEYRGVPNR-MDASSIEKMVGKYSE--DFKIRVTPHKLRHTLAT 326

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            L         +   LGH     T +YT++
Sbjct: 327 RLYDATKSQVLVSHQLGHSSTQVTDLYTHI 356


>gi|322691066|ref|YP_004220636.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320455922|dbj|BAJ66544.1| putative phage integrase [Bifidobacterium longum subsp. longum JCM
           1217]
          Length = 401

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
           +++   PLFR  RG P+     Q   R+    +GLP     H+ RH+ AT +   G    
Sbjct: 304 DIDPDTPLFRSGRGNPIRKETLQNAWRKALERVGLP-RVRVHSARHTAATAMARIGVSDL 362

Query: 282 SIQSILGHFRLSTTQ-IYTNVNS 303
           + ++I+GH  + TT  IYT+V++
Sbjct: 363 ARRAIIGHADIGTTDAIYTHVDA 385


>gi|312792896|ref|YP_004025819.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180036|gb|ADQ40206.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 392

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 3/68 (4%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G P+ P  F R   ++    GL ++   H LRH+FAT LL    + + +Q +LGH  +ST
Sbjct: 305 GTPIEPRNFLRTFYRITEKAGLNIN--FHALRHTFATRLLEANTNPKVVQELLGHSDIST 362

Query: 295 T-QIYTNV 301
           T  IY++V
Sbjct: 363 TLNIYSHV 370


>gi|288801868|ref|ZP_06407310.1| integrase [Prevotella melaninogenica D18]
 gi|288335910|gb|EFC74343.1| integrase [Prevotella melaninogenica D18]
          Length = 431

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 15/155 (9%)

Query: 158 AILYLLYGC--GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVRKAIL 211
           A L  ++ C  G+ I++  +L  ++I    D +  +R + +  K+  +VPL P + +AI+
Sbjct: 238 ARLMFVFSCFTGMAIADMENLEYRHIQTAADGRKYIRKERQKTKVEFVVPLHP-IAEAII 296

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR-----RYLGLPLSTTAHTLR 266
            +   C  +   N +    +    K + P    R +   R     +  G+    + H  R
Sbjct: 297 RH---CLEEQKGNEEQQTVKEKGKKHIFPRECSRSVIDGRLSIVGKACGIRQRLSYHVAR 353

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H+F T  LS G  + SI  ++GH  +S+TQIY  V
Sbjct: 354 HTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQV 388


>gi|228470635|ref|ZP_04055491.1| putative integrase [Porphyromonas uenonis 60-3]
 gi|228307643|gb|EEK16622.1| putative integrase [Porphyromonas uenonis 60-3]
          Length = 423

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 70/158 (44%), Gaps = 30/158 (18%)

Query: 183 DDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY--DLCPFDL---NLNIQLPLFRGIRGK 236
           D    +RI+  K D   I+PLLP + K IL +Y  D    DL   NL       R     
Sbjct: 276 DGTEEIRIKRQKTDVEAIIPLLP-IAKQILSFYIKDKKVDDLIFPNLTT-----RKASLA 329

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTT 295
            +N G   R  + L          T H  RH+F+T + LSNG  + ++  +LGH  + TT
Sbjct: 330 CVNIGQICRIEKGL----------TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTT 379

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHP-------SITQKDK 326
           QIY  +      + M  + D+ H        SI Q+DK
Sbjct: 380 QIYGKITDHKIQEDMTALTDREHSAFEGYCESIAQQDK 417


>gi|210612360|ref|ZP_03289285.1| hypothetical protein CLONEX_01486 [Clostridium nexile DSM 1787]
 gi|210151620|gb|EEA82627.1| hypothetical protein CLONEX_01486 [Clostridium nexile DSM 1787]
          Length = 420

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 92/206 (44%), Gaps = 53/206 (25%)

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +E + L  V N      H  ++ DA      Y+L+  GLRISE   LT +++   +  + 
Sbjct: 193 DETKFLDFVKN----DPHYNQYYDA-----FYILFKTGLRISEFCGLTVKDLDFKEDIIN 243

Query: 190 IQGKGDK----------------IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----- 228
           +  +  +                 R++P+   V++A L         +  N + P     
Sbjct: 244 VNHQLQRTREMKYIIVSTKTTSGTRLLPMEADVKEAFLR--------ILKNRRKPKREPM 295

Query: 229 -------LFRGIRGKPLNPGVFQRYIRQLR-RY-----LGLPLSTTAHTLRHSFATHLLS 275
                  LF    G+P+    +++Y++  R +Y     L LP   T H  RH++ T++ +
Sbjct: 296 VDGYGGFLFLDKNGRPMVALHWEKYMQHAREKYNRENLLQLP-PVTPHICRHTYCTNMAN 354

Query: 276 NGGDLRSIQSILGHFRLSTT-QIYTN 300
           +G +L+++Q ++GH  +S T  IYT+
Sbjct: 355 SGMNLKTLQYLMGHSDVSVTLNIYTH 380


>gi|163849537|ref|YP_001637580.1| integrase family protein [Methylobacterium extorquens PA1]
 gi|163661142|gb|ABY28509.1| integrase family protein [Methylobacterium extorquens PA1]
          Length = 189

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 44/174 (25%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------GKGDKIRIVPLLPSVR 207
           RN A L L Y  GLR+ E  SL   +++D    +R Q        KG   R+V L   +R
Sbjct: 27  RNRAALMLSYLAGLRVGEIASLRWGDLLDGGGKVREQLRLGAAVTKGGHARVVFLNARLR 86

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ-----------------RYIRQL 250
           + I +Y                 RG  G+P  P + Q                 + +R  
Sbjct: 87  REIEQY-----------------RGTLGQP--PALLQPVLITQKRSAFSANTLCQLMRSW 127

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
               GL    ++H+ R  F T L  +G   ++I  + GH  LSTTQ Y +VN +
Sbjct: 128 YDQAGLD-GGSSHSGRRWFITRLAHSGISPKAIMMLAGHRHLSTTQRYIDVNDE 180


>gi|317480920|ref|ZP_07940001.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316903005|gb|EFV24878.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 308

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 66/156 (42%), Gaps = 25/156 (16%)

Query: 160 LYLLYGCGLRISE--ALSLTPQNIMDDQSTLR--------IQGKGDKIRIVPLLPSVRKA 209
           +Y+    GLRI E  AL  +  N+ D   T+         I+G+     +V   P  + +
Sbjct: 133 IYISLSTGLRIGEICALKWSDINVADGTITVSRTIERIYIIEGEKKHTELVINTPKTKNS 192

Query: 210 ILEYYDLCPFDLNL-NIQLPLFRGIRG---------KPLNPGVFQRYIRQLRRYLGLPLS 259
             E     P    L ++  PL + +           +P  P  ++ Y   L   L +P  
Sbjct: 193 CRE----IPMSKELLSMIKPLKKVVNEDFYVLTNDERPTEPRTYRNYYNGLMAKLDIP-K 247

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
              H LRHSFAT  +  G D +++  +LGH  +STT
Sbjct: 248 LKYHGLRHSFATRCIEAGCDYKTVSVLLGHSNISTT 283


>gi|315607652|ref|ZP_07882647.1| integrase [Prevotella buccae ATCC 33574]
 gi|315250835|gb|EFU30829.1| integrase [Prevotella buccae ATCC 33574]
          Length = 409

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 85/195 (43%), Gaps = 36/195 (18%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLT 177
           K  N LP+AL+ ++AL  +  VL     E +   AR+      L+ C  G    + + L+
Sbjct: 217 KGDNKLPKALD-REALDKL-KVLRFEDLEEEMETARD----IFLFACYVGAAYCDLMELS 270

Query: 178 PQNIM-DDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD-----LCPFDLNLNIQLP 228
             +++ DD+ +L ++    K  +   V LLP   + I  ++      L PF    N    
Sbjct: 271 KSHLVRDDEGSLWLKFNRQKTGVLCRVKLLPEAIRLIERFHSDERETLLPFIKYKN---- 326

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSIL 287
                         +Q  ++ LR   G+    T HT RH+FAT + L  G  + ++  +L
Sbjct: 327 --------------YQSCLKALRLRAGISFPFTTHTARHTFATLITLEQGVPIETVSKML 372

Query: 288 GHFRLSTTQIYTNVN 302
           GH  +S T+ Y  V 
Sbjct: 373 GHSNISMTERYAKVT 387


>gi|237722727|ref|ZP_04553208.1| bacteriophage integrase [Bacteroides sp. 2_2_4]
 gi|293373708|ref|ZP_06620055.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|317473968|ref|ZP_07933247.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|229448537|gb|EEO54328.1| bacteriophage integrase [Bacteroides sp. 2_2_4]
 gi|292631363|gb|EFF49994.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|316909810|gb|EFV31485.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 380

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+  + T HT RHS A  LL+ G D+ ++  ILGH  +  TQ+Y  +  K   D +  + 
Sbjct: 318 GVKKNVTFHTARHSCAVLLLTLGADIYTVSKILGHRSVRATQVYAKIVDKKKDDAITLVD 377

Query: 315 D 315
           D
Sbjct: 378 D 378


>gi|224024153|ref|ZP_03642519.1| hypothetical protein BACCOPRO_00876 [Bacteroides coprophilus DSM
           18228]
 gi|224017375|gb|EEF75387.1| hypothetical protein BACCOPRO_00876 [Bacteroides coprophilus DSM
           18228]
          Length = 418

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTN 300
           V  R ++ + R   +  + T H  RH+FAT + LSNG  L ++  +LGH  ++TTQIY  
Sbjct: 329 VTNRDLKIIARAAHVDKNITFHVARHTFATTITLSNGIPLETVSRMLGHASIATTQIYAK 388

Query: 301 VNSKNGGDWMMEI---YDQTHPSITQKDKK 327
           +  K   D M ++   Y   +  + QK  K
Sbjct: 389 IVDKKVLDDMAQLRNRYATENVCLKQKSNK 418


>gi|144898165|emb|CAM75029.1| Phage integrase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 387

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 42/71 (59%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +R   +L+    LP  T  H LRHSFA+ L+ +G  L S+Q+ILGH   + T  Y++++
Sbjct: 309 IRRCWNRLKAAATLPSDTRPHDLRHSFASLLVGSGQSLYSVQTILGHASPNMTARYSHLS 368

Query: 303 SKNGGDWMMEI 313
           + +  D ++ I
Sbjct: 369 NTSLVDRVLGI 379


>gi|325297680|ref|YP_004257597.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317233|gb|ADY35124.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 368

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 19/147 (12%)

Query: 163 LYGC--GLRISEALSLTPQN--IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           L+ C  GLRIS+ L L  ++  +  DQ    I+   +K      LP  ++A+    +LC 
Sbjct: 225 LFACMTGLRISDILKLDWRDFEVGPDQGYY-IRICTEKTETEATLPISQEAL----ELCG 279

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
              +  +   L R +   PL   + +  IR+           T H  RHS+A   +S G 
Sbjct: 280 EWGSGKVFKGLTRSMTHHPLKQWIAEAGIRK---------HITFHCFRHSYAVIQISLGT 330

Query: 279 DLRSIQSILGHFRLSTTQIYTN-VNSK 304
           D+ ++  +L H  ++TTQIY + VNSK
Sbjct: 331 DIYTVSKMLTHKNVTTTQIYADLVNSK 357


>gi|307329036|ref|ZP_07608203.1| integrase family protein [Streptomyces violaceusniger Tu 4113]
 gi|306885231|gb|EFN16250.1| integrase family protein [Streptomyces violaceusniger Tu 4113]
          Length = 384

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 39/180 (21%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---------------GKGDK-IRIVP 201
           A ++L    GLR  E   L   ++  D  T+ I                 K DK  R  P
Sbjct: 174 APIHLDASTGLRGGEVFGLEDHHVNLDTMTVTIDQQLVGPDKGVPYLGLPKTDKSYRTQP 233

Query: 202 LLPSVRKAILEYYDLCP-----FDLNLNIQLPLFRGIR-------GKPLNPGVFQR-YIR 248
           L PS   AI  + +L P      +   + + P++R  +       G P+  G + + + R
Sbjct: 234 LPPSTVAAIKVHRELRPPREVWIEDRTDPRKPVWRYAKLLFLSEAGAPVRRGSWAKLWAR 293

Query: 249 QLRRY----------LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            ++R           L +P  TT H LRH +A+ L+ NG  ++ +Q +LGH + S T  Y
Sbjct: 294 IVKRADRLLEEWGSPLRVPPGTTLHDLRHFYASVLIRNGATVKKVQRLLGHAKPSITLDY 353


>gi|282859347|ref|ZP_06268457.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282587879|gb|EFB93074.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 404

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYT 299
             +Q Y++ LR   G+    T HT RH+FAT + L  G  + ++  +LGH  +S T+ Y 
Sbjct: 320 ATYQSYLKALRLRAGIAFPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYA 379

Query: 300 NVN 302
            V 
Sbjct: 380 KVT 382


>gi|149921935|ref|ZP_01910378.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149817197|gb|EDM76675.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 369

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 40/81 (49%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G+PL      R + +     G+    T H LRH+FA+H +  G  +R +Q  LGH  ++ 
Sbjct: 289 GRPLAHNTIGRALTRAAEAAGIERRITPHVLRHTFASHAVLAGVPIRIVQGWLGHADITM 348

Query: 295 TQIYTNVNSKNGGDWMMEIYD 315
           T  Y +++ +  G  +  + D
Sbjct: 349 TMRYAHLSPEGHGGMIDRLLD 369


>gi|328911558|gb|AEB63154.1| putative tyrosine recombinase XerC-like protein [Bacillus
           amyloliquefaciens LL3]
          Length = 292

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 70/168 (41%), Gaps = 17/168 (10%)

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSV 206
           K I+ R+ AI+ +L   G+R+SE + L   ++    +   I   + KG K+R +P+    
Sbjct: 136 KLINYRDLAIIDMLRLTGMRVSELVDLKKADLTLKGNPYLIHINKSKGKKVRDIPISKEK 195

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            + I  Y +    D        +F     K L     Q  + +           T H LR
Sbjct: 196 FQYIRRYLESRNDDSEY-----VFVSRSNKKLTTRTVQMLLNEY--------EITPHMLR 242

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           H+ AT L   G DL +I   LG+  ++  Q YT    K   D   +IY
Sbjct: 243 HTLATELAKRGWDLSTIARFLGN-TVAVVQRYTIPTEKQMADAAADIY 289


>gi|207110374|ref|ZP_03244536.1| integrase-recombinase protein [Helicobacter pylori HPKX_438_CA4C1]
          Length = 99

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSIL 287
           LF   +G  L      + + ++  + GL      AH LRHSFAT L     DL  +Q  L
Sbjct: 11  LFCNQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEAL 70

Query: 288 GHFRLSTTQIYTNVNSK 304
           GH  L+T++IYT+ + +
Sbjct: 71  GHASLNTSRIYTHFDKE 87


>gi|60681762|ref|YP_211906.1| putative phage integrase [Bacteroides fragilis NCTC 9343]
 gi|60493196|emb|CAH07978.1| putative phage integrase [Bacteroides fragilis NCTC 9343]
          Length = 387

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 17/125 (13%)

Query: 203 LPSVRKAILEYYDL----C-PFDLNLNIQLPLFRGI---RGKPLNPGVF---------QR 245
           L  +   IL YY +    C P  + + + +P F+ I   +GK     +F          R
Sbjct: 255 LEQINNGILTYYRIKNRNCKPEAIKIPLSIPAFKIIEELQGKRKEGHLFTSLQCDQVVNR 314

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            I+++   L +    +A T RH+FAT  L    D+ ++Q +LGH  L  T IY +V  ++
Sbjct: 315 QIKEIASILEIKKKVSAKTGRHTFATIFLKKTKDVATLQKLLGHSNLKETMIYAHVLDES 374

Query: 306 GGDWM 310
             + M
Sbjct: 375 KQEGM 379


>gi|315607167|ref|ZP_07882171.1| integrase [Prevotella buccae ATCC 33574]
 gi|315251221|gb|EFU31206.1| integrase [Prevotella buccae ATCC 33574]
          Length = 409

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYT 299
             +Q Y++ LR   G+    T HT RH+FAT + L  G  + ++  +LGH  +S T+ Y 
Sbjct: 325 ATYQSYLKALRLRAGISFPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYA 384

Query: 300 NVNSK 304
            V  +
Sbjct: 385 KVTPR 389


>gi|304560203|gb|ADM42867.1| hypothetical protein ETAF_2763 [Edwardsiella tarda FL6-60]
          Length = 209

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 69/166 (41%), Gaps = 12/166 (7%)

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           +   RN  ++Y+ +  GLR+SE LSL   +I +DDQS    + K       PLLP   + 
Sbjct: 23  YFAERNYCMIYMGFIHGLRVSELLSLRLSDIDLDDQSIYIHRLKNGLSTNHPLLPEEVEV 82

Query: 210 ILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           I  +           I+       LF    G  L    F + I    +   + + +  H 
Sbjct: 83  IRVW-----LHARRKIRYAADSEWLFLSRLGTRLTRQQFYKIITDYGKKAEISICSHPHM 137

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN-SKNGGDW 309
           LRH+    L   G D R IQ  LGH  +  T  YT  N ++  G W
Sbjct: 138 LRHACGYALADRGIDTRLIQDYLGHRNIRHTVCYTASNAARFQGVW 183


>gi|298373374|ref|ZP_06983363.1| integrase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274426|gb|EFI15978.1| integrase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 409

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYT 299
             +Q Y++ LR    +P   T HT RH+FAT + L  G  + ++  +LGH  +S T+ Y 
Sbjct: 325 ATYQSYLKALRLRADIPFPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYA 384

Query: 300 NVN 302
            V 
Sbjct: 385 KVT 387


>gi|251782381|ref|YP_002996683.1| site-specific tyrosine recombinase XerS [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242391010|dbj|BAH81469.1| tyrosine recombinase [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 356

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 114/289 (39%), Gaps = 55/289 (19%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRT----------QKIGDRSLKRSLSGIKSFLKYLKKRKI 107
           I + T+  L+  ++ AF+   R           + +   ++ R+LS + S  KYL +   
Sbjct: 66  IDLATLEHLTKKDLEAFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVE 125

Query: 108 TTESNILNMRNLKKSNSL--------PRALNEKQALTLVDNVL-----LHTSHETKWID- 153
             +      RN+ K  S          RA N KQ L L D  +     +   +E K  + 
Sbjct: 126 NDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQKLFLGDETMGFLEYVDKDYELKLSNR 185

Query: 154 ---------ARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVP 201
                     R+ AI+ LL   G+R+SEA++L  +++   M     +R  GK D + +  
Sbjct: 186 AKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMVIEVIRKGGKRDSVNVAG 245

Query: 202 LLPSVRKAIL---------EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
                 +A L         E  DL  F       L  +RG+  + ++    ++ + +  +
Sbjct: 246 FAKPYLEAYLAIRKNRYKAEKQDLAFF-------LTEYRGVPNR-MDASSIEKMVGKYSQ 297

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                +  T H LRH+ AT L         +   LGH     T +YT++
Sbjct: 298 --DFKIRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHI 344


>gi|320352237|ref|YP_004193576.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320120739|gb|ADW16285.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 354

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 112/244 (45%), Gaps = 19/244 (7%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKK 121
           +++++ + + AF  KR  + +G  ++++ L+ +            +  ++ +  +R   K
Sbjct: 108 LKEITPSLVAAFRDKR-LKSVGPSTVQKDLALLSHLFTIANAEWALDIKNPVATIRKPAK 166

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
            +S  R L++ +A       LL TS +++  + +    L L+   G+R SEA  +T   I
Sbjct: 167 PDSRLRLLSKDEA-----RHLLETSKQSR--NKKLYHFLQLMLHTGMRPSEAAGITWGQI 219

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP--FDLNLNIQLP--LFRGIRGKP 237
             D   + +     K R VPL     + +LE   L P  ++ N  + LP      +R +P
Sbjct: 220 DIDARIIDLTVTKTKPRRVPLTVKAVELLLE---LMPDQYEKNSFVFLPNNCSETLRRRP 276

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
                F+R      +   +      H LRH+ A++LL  G DLR++  ILGH  +   Q 
Sbjct: 277 --NLFFRRAFWNALKKANIE-DFHMHDLRHTAASYLLMAGVDLRTLADILGHSTMQMVQR 333

Query: 298 YTNV 301
           YT++
Sbjct: 334 YTHL 337


>gi|289450059|ref|YP_003474822.1| phage integrase, N-terminal SAM domain-containing protein
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184606|gb|ADC91031.1| phage integrase, N-terminal SAM domain protein [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 329

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 8/153 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A++ +L   G+R+ E + L   +I  ++    + GKG K R+V      +  +L Y 
Sbjct: 173 RDLALIDILASTGMRVGELVLLNRDDINFEERECVVFGKGSKERMVYFDARTKIHLLTYL 232

Query: 215 DLCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                D        LF  +R   + L  G  +  +R+L   L +      H  R + AT 
Sbjct: 233 QGRTDD-----NPALFVSLRAPHERLKIGGVECRLRELGNKLDIE-KVHPHKFRRTLATM 286

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +  G  +  +Q +LGH R+ TT  Y  V   N
Sbjct: 287 AIDKGMPIEQLQQLLGHKRIDTTLQYAMVKQSN 319


>gi|198276144|ref|ZP_03208675.1| hypothetical protein BACPLE_02333 [Bacteroides plebeius DSM 17135]
 gi|198270956|gb|EDY95226.1| hypothetical protein BACPLE_02333 [Bacteroides plebeius DSM 17135]
          Length = 387

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 82/205 (40%), Gaps = 58/205 (28%)

Query: 120 KKSNSLPRALN--EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           K S  LP  +   EK  L L    L+H+            A L+  Y  G+R S+ + L 
Sbjct: 208 KHSFLLPEEIRKLEKLELPLCSKSLIHSL----------KAFLFCCY-TGVRYSDFVHLN 256

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
             NI        +  KG+K  I   + +                N  + +PL+   +GK 
Sbjct: 257 ENNI--------VTIKGEKWLIFRTVKT----------------NTEVSIPLYLLFQGKA 292

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTA-------------------HTLRHSFATHLLSNGG 278
           L   + Q Y R +  +  L  +++                    HT RH+ AT L+ NG 
Sbjct: 293 LR--LLQEYNRNVNDFFHLKSNSSVNKDLKKIGMLAKIEKHFSFHTARHTNATLLIYNGA 350

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNS 303
            + ++Q +LGH  + TTQ Y+++ S
Sbjct: 351 QITTVQKLLGHQSVKTTQGYSDIFS 375


>gi|160891067|ref|ZP_02072070.1| hypothetical protein BACUNI_03514 [Bacteroides uniformis ATCC 8492]
 gi|156859288|gb|EDO52719.1| hypothetical protein BACUNI_03514 [Bacteroides uniformis ATCC 8492]
          Length = 421

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R +++L +  G+    + H  RHSFAT + LSNG  + ++ S+LGH  + TTQ+Y  +
Sbjct: 327 RSLKRLGKKCGITKPLSWHVSRHSFATSVCLSNGVPIETVSSMLGHKDIKTTQVYAKI 384


>gi|149920837|ref|ZP_01909300.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149818355|gb|EDM77807.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 369

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 40/81 (49%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G+PL      R + +     G+    T H LRH+FA+H +  G  +R +Q  LGH  ++ 
Sbjct: 289 GRPLAHNTIGRALTRAAEAAGIERRITPHVLRHTFASHAVLAGVPIRIVQGWLGHADITM 348

Query: 295 TQIYTNVNSKNGGDWMMEIYD 315
           T  Y +++ +  G  +  + D
Sbjct: 349 TMRYAHLSPEGHGGMIDRLLD 369


>gi|315918974|ref|ZP_07915214.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313692849|gb|EFS29684.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 266

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 54/249 (21%), Positives = 106/249 (42%), Gaps = 23/249 (9%)

Query: 51  AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE 110
            +YT  +   +   +L+    R FI     +K+   +++  ++ I+ F K++KK     E
Sbjct: 22  VYYTSLRKYFEYANELNMDNCRRFIKSLEEEKLSPATIRLRITAIEKFSKWVKK---PIE 78

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
                M+     N++P    E++   L++ +      +TK ++      + +L   G R+
Sbjct: 79  LKRPRMKRKLDVNNVP---TEEEYNRLLEYL------KTK-LNKDYYFFIKVLGTTGARL 128

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
           SE    T ++I   +  L+  GKG+K R       +++ + +Y         L +     
Sbjct: 129 SEFQQFTWEDIATGEVVLK--GKGNKYRRFFFQKQLQREVKDYIKETGKSGTLAVG---- 182

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGH 289
              R  PL      ++++   ++ G+      AH  RH FA   L    D+  +  +LGH
Sbjct: 183 ---RFGPLTQRGLSQHLKVWGKHCGIDSKKMHAHAFRHFFAKMFLKKTKDVIQLADLLGH 239

Query: 290 FRLSTTQIY 298
             + TT+IY
Sbjct: 240 GSVDTTRIY 248


>gi|307592267|ref|YP_003899858.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306985912|gb|ADN17792.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 338

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 66/312 (21%), Positives = 125/312 (40%), Gaps = 36/312 (11%)

Query: 22  LQNLEIERG-LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +++L I  G  +  TL++Y    +QFL +      + I+     + +    R ++ K + 
Sbjct: 19  IEHLNIANGNPADDTLKTYSAALKQFLTWCKI---KAISPMCATEGTICSYRQYLLKTKK 75

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            K    +LK  L+ ++ F     K+     +   +++   +S   P   N    LT    
Sbjct: 76  YKPASVALK--LTVVRRFYTMATKQGFIAANPATDVKPPTQSYD-PATHNNYLDLTEAKQ 132

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIR 198
           ++    ++      R+ A++ ++   G R  E   L   +I+  ++   L +QGK  + R
Sbjct: 133 LIESLPNDDSLPSLRDRALIEIMVWQGCRTVELYRLNVGDIIKRNEDLGLNVQGKRSR-R 191

Query: 199 IVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGI---RGKPLNPGVFQRYIRQLRR-- 252
           IVPL P + + + +Y          L    PLF  +   +G  L      R + +  +  
Sbjct: 192 IVPLTPDLAQLLQKYLKARKKAGEILKADTPLFTSLTRNKGSRLTRRSIARIVDKYLKIN 251

Query: 253 --------------------YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                               ++  P   +AH+LRH+  T  L  G  LR +Q +LGH   
Sbjct: 252 GWKNNNLDEHQVDHDDFDDLFICSPRKLSAHSLRHTCGTLALWAGVSLRQVQDLLGHRDP 311

Query: 293 STTQIYTNVNSK 304
            TT +Y +   +
Sbjct: 312 ETTALYAHAGDR 323


>gi|139473728|ref|YP_001128444.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes
           str. Manfredo]
 gi|166918905|sp|A2RED8|XERS_STRPG RecName: Full=Tyrosine recombinase xerS
 gi|134271975|emb|CAM30213.1| tyrosine recombinase XerC [Streptococcus pyogenes str. Manfredo]
          Length = 356

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 111/289 (38%), Gaps = 55/289 (19%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRT----------QKIGDRSLKRSLSGIKSFLKYLKKRKI 107
           I + T+  L+  ++ AF+   R           + +   ++ R+LS + S  KYL +   
Sbjct: 66  IDLSTLEHLTKNDLEAFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVE 125

Query: 108 TTESNILNMRNLKKSNSL--------PRALNEKQALTLVDNVLLHTSHETKWID------ 153
             +      RN+ K  S          RA N KQ L L D  L    +  K  +      
Sbjct: 126 NDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQKLFLGDETLAFLDYVDKEYEQKLSNR 185

Query: 154 ---------ARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVP 201
                     R+ AI+ LL   G+R+SEA++L  +++   M     +R  GK D + +  
Sbjct: 186 AKSSFRKNKERDLAIISLLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDSVNVAG 245

Query: 202 LLPSVRKAIL---------EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
                 ++ L         E  DL  F       L  +RG+  + ++    ++ + +   
Sbjct: 246 FAKGYLESYLAVRQRRYKAEKQDLAFF-------LTEYRGVPNR-MDASSIEKMVGKYSE 297

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                +  T H LRH+ AT L         +   LGH     T +YT++
Sbjct: 298 --DFKIRVTPHKLRHTLATRLYDATKSQVLVSHQLGHSSTQVTDLYTHI 344


>gi|301311823|ref|ZP_07217745.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300829925|gb|EFK60573.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 380

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 30/54 (55%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           G+  + T HT RHS A  LL+ G D+ ++  ILGH  +  TQ+Y  +  K   D
Sbjct: 318 GVKKNVTFHTARHSCAVLLLTLGADIYTVSKILGHRSVRATQVYAKIVDKKKDD 371


>gi|259419385|ref|ZP_05743301.1| integrase domain protein SAM domain protein [Silicibacter sp.
           TrichCH4B]
 gi|259344626|gb|EEW56513.1| integrase domain protein SAM domain protein [Silicibacter sp.
           TrichCH4B]
          Length = 483

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 33/138 (23%)

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR- 248
           I G G ++ +  L P  R+ +L   D  P   +L +        RG+P++ G ++   R 
Sbjct: 327 INGSGRRVALTRLRPQDRQRLLRSPDGMPEHASLWLTE------RGQPVSSGTWEVAFRR 380

Query: 249 --QLRRYLGLPLSTTAHTLRHSFATHLLSN------------------------GGDLRS 282
             Q  +  GL ++ T H LRH+FA ++LS                         G  LR 
Sbjct: 381 ASQRCQIFGLDVTVTPHMLRHTFAVNMLSMLIREQVGAIFNPTDAHGAAYRQMLGDPLRH 440

Query: 283 IQSILGHFRLSTTQIYTN 300
           +Q +LGH  +++T IY +
Sbjct: 441 LQHLLGHTNITSTYIYLD 458


>gi|332343303|gb|AEE56637.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 540

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 71/169 (42%), Gaps = 32/169 (18%)

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL---RIQGKGD----- 195
           HT+H T   +AR  A L  +   G R +E   LT ++I+   + L    I   GD     
Sbjct: 365 HTAHTTS--EARRWASLVSVV-TGARSAEVCHLTKRDIVTLDNGLVCIDINEDGDGKSVK 421

Query: 196 ---KIRIVPLLPSVR----KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI- 247
               +R+VPL         K+ LE+ D+ P       + PLF       + P  +  +  
Sbjct: 422 NKHSVRLVPLTDGACGLDLKSFLEWVDMQPD------EGPLF------GMTPSAYSSWFN 469

Query: 248 -RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            R L   LG     + H+LRH  AT +   G +L   Q ILGH   S T
Sbjct: 470 SRVLTEALGDSQDVSLHSLRHWLATRMKERGVNLVDAQGILGHSSQSIT 518


>gi|282878603|ref|ZP_06287379.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281299274|gb|EFA91667.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 423

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 8/74 (10%)

Query: 261 TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           T H  RH+F+T + LSNG  + ++  +LGH  + TTQIY  +      + M  + D+ H 
Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIDTTQIYGKITDHKIQEDMTALTDREHS 403

Query: 320 -------SITQKDK 326
                  SI Q+DK
Sbjct: 404 AFEGYCESIAQQDK 417


>gi|60280069|gb|AAX16408.1| integrase [uncultured murine large bowel bacterium BAC 54B]
          Length = 419

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 86/194 (44%), Gaps = 25/194 (12%)

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           +K+ LT+ +   L  +H      A   A L+  +  G+R  + +SLT  N+      LR 
Sbjct: 232 KKEILTMDEIKRLAATHYEGEDTALQRAFLFCCF-TGIRWCDTVSLTYANVDFSAKILRF 290

Query: 191 QGKGDKIR------IVPLLPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
             +  + R       +PL P++ K I   +++     F++       + R          
Sbjct: 291 NQQKTEGRSAHSGVTIPLSPTLLKLIGNPIQHTSEKIFNITCYRTTAITR---------- 340

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             Q++++      G+  + T H  RHSFA ++L  G +++++ S++GH  +  T+ Y +V
Sbjct: 341 -LQKWVKAA----GINKTITWHCARHSFAVNVLGAGANIKTVASLMGHSSIKMTEKYLHV 395

Query: 302 NSKNGGDWMMEIYD 315
             +   D +  + D
Sbjct: 396 IDQQKQDAINSLGD 409


>gi|53714740|ref|YP_100732.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52217605|dbj|BAD50198.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 400

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 5/171 (2%)

Query: 132 KQALTLVD-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           K+ALT VD   +L      +++        +  Y  G+   +   LT  N++D +   + 
Sbjct: 214 KRALTKVDIERVLQFQSSNRYMRFPIDIFTFTYYCGGINFKDIAHLTKANLIDGRLIYKR 273

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGV--FQRYI 247
           Q K  K+  +PL P     I +Y+D   P+   +   L +    +   ++  +      +
Sbjct: 274 Q-KTKKLIKIPLQPQALALIKKYHDTESPYLFPILSPLHITDEQKANRIHKVITKVNDRL 332

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +Q+ + L LP++ T +  RHS AT +   G     I+ I+GH     TQIY
Sbjct: 333 KQIGKTLNLPITLTTYVARHSQATVMKKAGVSTAVIREIMGHSSERVTQIY 383


>gi|312969130|ref|ZP_07783337.1| integrase [Escherichia coli 2362-75]
 gi|312286532|gb|EFR14445.1| integrase [Escherichia coli 2362-75]
          Length = 350

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 28/186 (15%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--------TKWIDARNSAILYLLYGCGLRISEALS 175
           S P  L   +  T+ +  +   +HE         K  D   + ++ +    G R  E ++
Sbjct: 154 SYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICLSTGARWREDVN 213

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           LT   +   + T  ++ KG K R +P+   + + I+    L  F+   +           
Sbjct: 214 LTRSQVTKYRITF-VRAKGKKNRSIPISKELYEEIMA---LDGFNFFTDC---------- 259

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  FQ      +  + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T
Sbjct: 260 ------YFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMT 313

Query: 296 QIYTNV 301
             Y ++
Sbjct: 314 MRYAHL 319


>gi|302346947|ref|YP_003815245.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302150881|gb|ADK97142.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 407

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           Y++++    G+  + T H  RH+FAT  +S G  + S+  +LGH  +  TQIY  + +K
Sbjct: 327 YLKEIADLCGIKKNLTFHMARHTFATMSISKGVPMESVSKMLGHTNIRITQIYARITNK 385


>gi|295840966|dbj|BAJ06851.1| integron integrase intI [uncultured bacterium]
          Length = 281

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 100/251 (39%), Gaps = 56/251 (22%)

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSF--LKYLKKRKITTESNILN-MRNLK 120
           R+L   E+ AF+    T    DR +  S    ++F  L +L +  +  E   L+ +   K
Sbjct: 47  RELGKAEVEAFL----THLAVDRKVSASTQN-QAFNALLFLYRTVLEMEMPQLDSVERAK 101

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K   LP  L+ +Q   ++  +      + K+  A N     LLYG GLR+ E L L  Q+
Sbjct: 102 KPRRLPVVLSSEQVRQVLSQL------DGKYWIAGN-----LLYGSGLRLVECLRLRVQD 150

Query: 181 IMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYD-----------------LCPFDLN 222
           I      L ++G KG+K R+  L  +V + +  Y                     PF L 
Sbjct: 151 IDFAMRQLVVRGGKGNKDRVTILPEAVIEPLNGYLQKVLTIHNRDIEKGLGQVYMPFALA 210

Query: 223 -----------LNIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGLPLSTTAH 263
                           P    IR +         L+    QR IR   +   +    TAH
Sbjct: 211 RKYPHAASEWAWQFVFPSTTYIRDRDTGRMVKYHLHEKALQRAIRNAVKASSITTRATAH 270

Query: 264 TLRHSFATHLL 274
           TLRHSFATHLL
Sbjct: 271 TLRHSFATHLL 281


>gi|265763793|ref|ZP_06092361.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263256401|gb|EEZ27747.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 387

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 17/125 (13%)

Query: 203 LPSVRKAILEYYDL----C-PFDLNLNIQLPLFRGI---RGKPLNPGVF---------QR 245
           L  +   IL YY +    C P  + + + +P F+ I   +GK     +F          R
Sbjct: 255 LEQINNGILTYYRIKNRNCKPEAIKIPLSIPAFKIIEELQGKRKEGHLFTSLQCDQVVNR 314

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            I+++   L +    +A T RH+FAT  L    D+ ++Q +LGH  L  T IY +V  ++
Sbjct: 315 QIKEIASILEIKKKVSAKTGRHTFATIFLKKTKDVATLQKLLGHSNLKETMIYAHVLDES 374

Query: 306 GGDWM 310
             + M
Sbjct: 375 KQEGM 379


>gi|144899640|emb|CAM76504.1| Integrase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 195

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 12/145 (8%)

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQ-------GKGDKIRIVPLLPSVRKAILEYYDLCP 218
            GLR  E  SLT  ++MD     + +        KG K R + +   ++K +  +  L  
Sbjct: 43  AGLRACEIASLTIGDVMDSTGKPKSEIYLAQSMTKGKKGRTIMVGDKLQKEVARFIALHD 102

Query: 219 FDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
              +     PL    +  KP +     +  R++    G+    ++H+ R SF T L   G
Sbjct: 103 ---SRESSRPLIASQKSNKPFSANTLVQLFRKIYADAGID-GASSHSGRRSFITTLAEKG 158

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVN 302
             +R +Q + GH  L+TTQ Y +VN
Sbjct: 159 VGVRVLQHLAGHSSLATTQRYIDVN 183


>gi|323191016|gb|EFZ76283.1| integrase [Escherichia coli RN587/1]
          Length = 350

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 28/186 (15%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--------TKWIDARNSAILYLLYGCGLRISEALS 175
           S P  L   +  T+ +  +   +HE         K  D   + ++ +    G R  EA++
Sbjct: 154 SYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICLSTGARWREAVN 213

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           L    +   + T  ++ KG K R +P+   + + I+    L  F+   +           
Sbjct: 214 LARSQVTKYRITF-VRTKGKKNRSIPISKELYEEIMA---LDGFNFFTDC---------- 259

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  FQ      +  + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T
Sbjct: 260 ------YFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMT 313

Query: 296 QIYTNV 301
             Y ++
Sbjct: 314 MRYAHL 319


>gi|313887048|ref|ZP_07820747.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923459|gb|EFR34269.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 398

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 70/158 (44%), Gaps = 30/158 (18%)

Query: 183 DDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY--DLCPFDL---NLNIQLPLFRGIRGK 236
           D    +RI+  K D   I+PLLP + K IL +Y  D    DL   NL       R     
Sbjct: 251 DGTEEIRIKRQKTDVEAIIPLLP-IAKQILSFYIKDKKVDDLIFPNLTT-----RKASLA 304

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTT 295
            +N G   R  + L          T H  RH+F+T + LSNG  + ++  +LGH  + TT
Sbjct: 305 CVNIGQICRIEKGL----------TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTT 354

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHP-------SITQKDK 326
           QIY  +      + M  + D+ H        SI Q+DK
Sbjct: 355 QIYGKITDHKIQEDMTALTDREHSAFEGYCESIAQQDK 392


>gi|294776404|ref|ZP_06741882.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294449730|gb|EFG18252.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 332

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 19/163 (11%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL---LPSVRKAILEYY 214
           I+ +LYG G+RI EAL L  +++     TL + + K  + RIVP+   L ++ K  + Y 
Sbjct: 146 IIRMLYGTGIRIGEALKLCHKDVNLALGTLTLHECKNGQDRIVPMSLSLTAICKDYVVYK 205

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-----HTLRHSF 269
           + C  ++++    P F    GK        R  + + +  G+           H LRH+F
Sbjct: 206 EHC--NMSVEPDAPFFSSADGKRCRGTSINRLFKAVLQRAGIFAGAKGKTPRLHDLRHTF 263

Query: 270 ATHLL----SNGGDLRS----IQSILGHFRLSTTQIYTNVNSK 304
               L     +G DL +    + + +GH  L +T  Y  +  +
Sbjct: 264 CVESLVKMSESGKDLYNSLPLLMTYVGHKSLYSTNQYVRMTQQ 306


>gi|283795776|ref|ZP_06344929.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
 gi|291076407|gb|EFE13771.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
          Length = 344

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 42/189 (22%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLR---------IQGKG----------DKIRI 199
           I+ +L G G+R++E   +T  +I   ++T+          I GK              RI
Sbjct: 141 IMTVLLGTGMRVAECTGITKSDINLSENTISVNHNLIYRVIDGKAGFHITTPKTESGTRI 200

Query: 200 VPLL-PSVRKAI---LEYYDLCPFDLNL---NIQLPLFRGIRGKPLNPGVFQRYIRQLR- 251
           +P+L P V + +   +E  D    D  L    +   +FR   G  ++     R I ++  
Sbjct: 201 IPILYPEVAEQLRLQIETIDALYPDDQLVLGGVHGFVFRNRTGSFMSAHNINRAIERISV 260

Query: 252 --------------RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
                         R   L    + H LRH+F T L  +  D++ IQ ++GH   STT  
Sbjct: 261 TYNMEEMDQAELEDREPDLLPHFSVHNLRHTFCTRLCESTNDVKFIQQVMGHADFSTTMD 320

Query: 297 IYTNVNSKN 305
           IYT++  +N
Sbjct: 321 IYTHITQEN 329


>gi|229102535|ref|ZP_04233240.1| Tyrosine recombinase [Bacillus cereus Rock3-28]
 gi|228680857|gb|EEL35029.1| Tyrosine recombinase [Bacillus cereus Rock3-28]
          Length = 190

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 8/152 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AIL    G G+R+SE   L  ++I   +  + +  KG+K   V + P    A+ +Y 
Sbjct: 26  RDVAILSFFLGSGIRVSELADLRMEDINLKERLIDVIRKGNKEDSVWITPIALNALEKYM 85

Query: 215 DL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           ++      P     N+ L  ++    +PL+    Q  + +  +  G  +S   H LRH+ 
Sbjct: 86  EIRDNKYVPGKELKNVFLSKYKHT-AQPLSVRAIQDIVEKYTKAYGKKMS--PHKLRHTL 142

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           A  L     D   +   LGH    T  +YT +
Sbjct: 143 ANKLYMEEKDSLQVMQQLGHTSQDTALLYTQL 174


>gi|329570113|gb|EGG51855.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1467]
          Length = 392

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 139/327 (42%), Gaps = 57/327 (17%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q W    E  R L++  + +Y+    Q  I   +  +EK+       LS  E++ F+   
Sbjct: 66  QKWF---EYYRSLNEQKIATYDKREEQVKILNRWIGDEKLN-----SLSSEELQKFLFIL 117

Query: 79  RTQKI-------GDRSLKRSLSGIKSFLKYLKKRKITTESNI---------LNMRNLKKS 122
           + + I          SL+  +  +    KY  K+ +T E+ +         L +++LK+S
Sbjct: 118 KEKGINGVDVGYAKNSLQSLVQVLNMIFKYCMKKNLTNENPMKFVKMPKYQLTVKDLKES 177

Query: 123 -NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
            N L     E + LT VD +    ++   + +   S + ++L+  G R+SEAL+L PQ+I
Sbjct: 178 VNCL-----EDKFLT-VDELRTFLNYGIIYEELPMSVLFHVLFYTGCRVSEALALQPQDI 231

Query: 182 MDDQSTL------RIQGKGDKIRI-----------VPLLPSVRKAILEYYD-LCPFDLNL 223
             +++ +       ++GK    RI           VP+ P V + + E  D L     N 
Sbjct: 232 DFERNEILFYKQTAVKGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRNS 291

Query: 224 NIQLP-------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
           N  +        L  G  G P        ++++     G+  +   H  RH+ A+ L++ 
Sbjct: 292 NFVVDEAYLFVYLDPGKCGVPYRREYVNDHVKRCVDRCGINKNFHTHLARHTMAS-LVAE 350

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNS 303
                 ++  LGH   +T++IY ++ S
Sbjct: 351 YCSWDVLKDRLGHTDSTTSKIYRHLTS 377


>gi|312886963|ref|ZP_07746567.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311300275|gb|EFQ77340.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 411

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 17/158 (10%)

Query: 162 LLYGC--GLRISEALSLTPQNI---MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYD 215
            ++ C  GL  ++  +L   +I   +DD+  + I + K +    +PLL   RK +  Y D
Sbjct: 250 FVFSCYTGLAYADVKNLKRSDIKTGIDDKEWIFINRQKTNSASHLPLLAQARKILTRYRD 309

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
                +  +  LP+   +  + +N      Y++++    G+    T H  RH+FAT + L
Sbjct: 310 HSKC-IETDAALPV---LTNQKMNA-----YLKEIADTCGIKEELTFHIARHTFATTVTL 360

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGDWMM 311
           +NG  + S+  +LGH  +  TQ Y  + N K   D ++
Sbjct: 361 NNGVPMESVSKMLGHSSIRQTQHYAKMQNYKVSKDMLL 398


>gi|296393463|ref|YP_003658347.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296180610|gb|ADG97516.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 411

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 2/63 (3%)

Query: 235 GKPLNPGVFQRYIRQLRRY--LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           G P+ P   ++ IR+LR    + LP + T H LRH  A++L+++G D++++Q+ L H   
Sbjct: 315 GDPVAPRYIEQAIRELRESGKVDLPETFTFHDLRHYNASYLIASGADIKTVQTRLRHASA 374

Query: 293 STT 295
            TT
Sbjct: 375 KTT 377


>gi|291521082|emb|CBK79375.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 314

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 14/151 (9%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           LL+  GLR SE ++LT  ++    + L +   K +K RIVPLLP V   +  Y       
Sbjct: 139 LLWATGLRTSELVNLTISDVDFTNNLLNVCSSKFNKDRIVPLLPEVSDQLRSYRSQVESI 198

Query: 221 LN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT----LRHSFATHLLS 275
            N + +    F    GKP     F+   + +R  + +  S   H      RH+FAT  + 
Sbjct: 199 CNKVRLGNEFFITTGGKPFKRNAFEYAFQTIRDIIDVSDSGYPHARLYDFRHTFATRTIK 258

Query: 276 N----GGDLRS----IQSILGHFRLSTTQIY 298
           N    G D+ +    + + +GH     T  Y
Sbjct: 259 NWLEQGMDVNAKLFLLSTYMGHIHPEDTYWY 289


>gi|256838368|ref|ZP_05543878.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256739287|gb|EEU52611.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 407

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           ++++ R  G+  S + H  RH FAT  LS G  + S+  +LGH  + TTQ+Y  + ++
Sbjct: 327 LKRMIRECGITKSISFHCSRHGFATLALSKGMPIESVSRVLGHTNIVTTQLYAKITTQ 384


>gi|293396900|ref|ZP_06641174.1| phage integrase family site-specific recombinase [Serratia
           odorifera DSM 4582]
 gi|291420371|gb|EFE93626.1| phage integrase family site-specific recombinase [Serratia
           odorifera DSM 4582]
          Length = 372

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 20/147 (13%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           ++ +    G R  EA +LT   I   + T  I+ KG K R VP    + KA+ E      
Sbjct: 225 VVEVCLSTGARWREAENLTRSQITPHKITF-IRTKGKKNRSVP----ISKALYEKLTT-- 277

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
                       RG  G+  +   F+         + LP     H LRH+FA H + +GG
Sbjct: 278 ------------RG-DGRLFSECYFRFMAAVENTSIQLPKGQLTHVLRHTFAAHFMMSGG 324

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKN 305
           ++  +Q ILGH  +  T  Y ++  ++
Sbjct: 325 NILVLQRILGHHDIKMTMRYAHLAPEH 351


>gi|257437687|ref|ZP_05613442.1| putative bacteriophage integrase [Faecalibacterium prausnitzii
           A2-165]
 gi|257199994|gb|EEU98278.1| putative bacteriophage integrase [Faecalibacterium prausnitzii
           A2-165]
          Length = 466

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSIL 287
           LFR   G P+ P V  ++ RQ R           H LRHS AT+ LL +GGD +S+Q   
Sbjct: 326 LFRLPDGLPIAPDVLTKWYRQWRAEHPEFEKIVFHGLRHSSATYQLLQSGGDFKSVQGNT 385

Query: 288 GH 289
           GH
Sbjct: 386 GH 387


>gi|158340194|ref|YP_001521364.1| phage integrase [Acaryochloris marina MBIC11017]
 gi|158310435|gb|ABW32050.1| phage integrase [Acaryochloris marina MBIC11017]
          Length = 298

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 79/182 (43%), Gaps = 36/182 (19%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           DAR +A++ LL+  G RISE LSL  + +  +Q   ++ GKG++ R         + + +
Sbjct: 129 DARTAALVRLLHRTGARISELLSLDLEALDLEQRKFQVIGKGNRQRWCFYSEDAAEVLQK 188

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF--QRYI----------------RQLRRYL 254
           Y             L  +R     P +P +F  Q+Y+                +QL +  
Sbjct: 189 Y-------------LAEYR----HPGSPALFTAQQYLSDQVNRLSYRSAHHNWKQLIKGH 231

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
                T  H LRH+FAT  +     L  +++++GH  + TT  Y  V S+   +     +
Sbjct: 232 PTLAGTRLHDLRHTFATERVGIIA-LEELRALMGHQSIQTTLRYQKVTSEQAQNAAQRAF 290

Query: 315 DQ 316
           D+
Sbjct: 291 DK 292


>gi|320458354|dbj|BAJ68975.1| putative phage integrase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 401

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
           +++   PLFR  RG P+     Q   R+    +GLP     H+ RH+ AT +   G    
Sbjct: 304 DIDPDTPLFRSGRGNPIRKETLQNAWRKALERVGLP-RVRVHSARHTAATAMARIGVSDL 362

Query: 282 SIQSILGHFRLSTT-QIYTNVNS 303
           + ++I+GH  + TT  IYT+V++
Sbjct: 363 ARRAIIGHADIGTTNAIYTHVDA 385


>gi|167753782|ref|ZP_02425909.1| hypothetical protein ALIPUT_02066 [Alistipes putredinis DSM 17216]
 gi|167658407|gb|EDS02537.1| hypothetical protein ALIPUT_02066 [Alistipes putredinis DSM 17216]
          Length = 407

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           ++++ R  G+  S + H  RH FAT  LS G  + S+  +LGH  + TTQ+Y  + ++
Sbjct: 327 LKRMIRECGITKSISFHCSRHGFATLALSKGMPIESVSRVLGHTNIVTTQLYAKITTQ 384


>gi|50914248|ref|YP_060220.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes
           MGAS10394]
 gi|50903322|gb|AAT87037.1| Integrase/recombinase xerD [Streptococcus pyogenes MGAS10394]
          Length = 368

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 131/330 (39%), Gaps = 64/330 (19%)

Query: 12  FELLKERQ---NWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           +E LKE +   +WL + ++ +   ++ + L + E  T++ L     Y  E+ ++ T    
Sbjct: 51  YEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLEAFVLYLRERPSLNT---- 106

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL- 125
                  + +K   + +   ++ R+LS + S  KYL +     +      RN+ K  S  
Sbjct: 107 -------YSTK---EGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTK 156

Query: 126 -------PRALNEKQALTLVDNVLLHTSHETKWID---------------ARNSAILYLL 163
                   RA N KQ L L D  L    +  K  +                R+ AI+ LL
Sbjct: 157 KKKETLASRAENIKQKLFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIISLL 216

Query: 164 YGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKAIL--------- 211
              G+R+SEA++L  +++   M     +R  GK D + +        ++ L         
Sbjct: 217 LASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDSVNVAGFAKGYLESYLAVRQRRYKA 276

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           E  DL  F       L  +RG+  + ++    ++ + +        +  T H LRH+ AT
Sbjct: 277 EKQDLAFF-------LTEYRGVPNR-MDASSIEKMVGKYSE--DFKIRVTPHKLRHTLAT 326

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            L         +   LGH     T +YT++
Sbjct: 327 RLYDATKSQVLVSHQLGHSSTQVTDLYTHI 356


>gi|28867763|ref|NP_790382.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28850998|gb|AAO54077.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 413

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 84/198 (42%), Gaps = 18/198 (9%)

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           +LN+R     +   R L+ ++   L+  V  H++    WI       + +    G+R SE
Sbjct: 204 VLNIRKPSPGDGRDRRLSPEEERLLLAAVNRHSNPMLGWI-------VCIALETGMRSSE 256

Query: 173 ALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYD--LCPFDLNLNIQLPL 229
             SL    +   +  +R+   K D  R VPL     +      D  + P D NL     +
Sbjct: 257 ISSLRRPQVDLAKRVIRLSDTKNDGSRTVPLSKRATEVFKAAMDNPVRPIDCNL-----V 311

Query: 230 FRGIRGK--PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           F G  GK     P  F +   QL++ L LP     H LRH   + L+  G   + + +I 
Sbjct: 312 FFGEPGKDGKRRPYTFTKIWGQLKKKLDLP-DFRFHDLRHEAVSRLVEGGLSDQEVSAIS 370

Query: 288 GHFRLSTTQIYTNVNSKN 305
           GH  +   + YT++ +++
Sbjct: 371 GHKSMQMLKRYTHLRAED 388


>gi|27468531|ref|NP_765168.1| transposition regulatory protein tnpA [Staphylococcus epidermidis
           ATCC 12228]
 gi|27316078|gb|AAO05212.1|AE016749_158 transposition regulatory protein tnpA [Staphylococcus epidermidis
           ATCC 12228]
          Length = 383

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 90/212 (42%), Gaps = 26/212 (12%)

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
           KSF+ ++ K    T  NIL ++  KK   +      K+ L   +N+             R
Sbjct: 156 KSFMHHINK-DYRTLKNILKVKEPKKKIEVLTNAEVKKLLEEANNI-------------R 201

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDD-----QSTL--RIQGKGDKIRIVPLLPSVRK 208
           +  ++ LLY  GLRI E LSL   +I  D     Q  L  R    G  ++       + +
Sbjct: 202 DKFLIQLLYETGLRIGEVLSLRIDDIKFDFRKGHQIVLKNRFNDNGTYLKTGERKIFISQ 261

Query: 209 AILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT- 264
           ++++ YD   +++   + +    LF  I+G+ +   +    I  L + L    S   H  
Sbjct: 262 SLIDLYDDYVYEIIDELSICSDYLFVKIKGRNVGEAMNYSDIYSLFKRLKHKTSINVHPH 321

Query: 265 -LRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             RH+ AT   +   D++ +Q  LGH  + TT
Sbjct: 322 LFRHTHATVFYNETKDIKQVQERLGHSNIQTT 353


>gi|198275333|ref|ZP_03207864.1| hypothetical protein BACPLE_01494 [Bacteroides plebeius DSM 17135]
 gi|212691216|ref|ZP_03299344.1| hypothetical protein BACDOR_00707 [Bacteroides dorei DSM 17855]
 gi|224026864|ref|ZP_03645230.1| hypothetical protein BACCOPRO_03623 [Bacteroides coprophilus DSM
           18228]
 gi|255007927|ref|ZP_05280053.1| integrase [Bacteroides fragilis 3_1_12]
 gi|298383989|ref|ZP_06993550.1| integrase [Bacteroides sp. 1_1_14]
 gi|301311550|ref|ZP_07217477.1| integrase [Bacteroides sp. 20_3]
 gi|313145638|ref|ZP_07807831.1| integrase [Bacteroides fragilis 3_1_12]
 gi|198271916|gb|EDY96186.1| hypothetical protein BACPLE_01494 [Bacteroides plebeius DSM 17135]
 gi|212666448|gb|EEB27020.1| hypothetical protein BACDOR_00707 [Bacteroides dorei DSM 17855]
 gi|224020100|gb|EEF78098.1| hypothetical protein BACCOPRO_03623 [Bacteroides coprophilus DSM
           18228]
 gi|298263593|gb|EFI06456.1| integrase [Bacteroides sp. 1_1_14]
 gi|300830636|gb|EFK61279.1| integrase [Bacteroides sp. 20_3]
 gi|313134405|gb|EFR51765.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313158703|gb|EFR58091.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 407

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           ++++ R  G+  S + H  RH FAT  LS G  + S+  +LGH  + TTQ+Y  + ++
Sbjct: 327 LKRMIRECGITKSISFHCSRHGFATLALSKGMPIESVSRVLGHTNIVTTQLYAKITTQ 384


>gi|189462732|ref|ZP_03011517.1| hypothetical protein BACCOP_03429 [Bacteroides coprocola DSM 17136]
 gi|189430601|gb|EDU99585.1| hypothetical protein BACCOP_03429 [Bacteroides coprocola DSM 17136]
          Length = 387

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 33/151 (21%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
            L+GC  G+  ++  +LT  NI++   T  I  K  K  +                  PF
Sbjct: 250 FLFGCWTGISFTDIKNLTTDNIVEMNGTPWIVSKRQKTGV------------------PF 291

Query: 220 DLNL-NIQLPLFRGIRGKPL-------NPG---VFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            + L +I + + R  R +P        N G   +  + I+ + +  G+    + H  RHS
Sbjct: 292 QIKLMDIPMQIIR--RYEPFRRDKRLFNIGSLDMVNKRIKAVAKKCGIEKPISFHLSRHS 349

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           FA   L+ G  + S+  ILGH  ++TTQIY 
Sbjct: 350 FAVLALNYGMPIESVSKILGHTNITTTQIYA 380


>gi|298674433|ref|YP_003726183.1| integrase family protein [Methanohalobium evestigatum Z-7303]
 gi|298287421|gb|ADI73387.1| integrase family protein [Methanohalobium evestigatum Z-7303]
          Length = 282

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           LN    + +I +L++   +P   +AH  RH  A + + NG D+R++Q  LGH  L+TT I
Sbjct: 170 LNENGAKVFINKLKKESKIPW-LSAHKFRHGHAIYCIQNGMDIRTLQLQLGHTDLATTAI 228

Query: 298 Y 298
           Y
Sbjct: 229 Y 229


>gi|255520384|ref|ZP_05387621.1| integrase [Listeria monocytogenes FSL J1-175]
          Length = 381

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 79/190 (41%), Gaps = 19/190 (10%)

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           E++ +T  D   L +  +T   D       YLL   GLR SEAL+LT  ++  +   L +
Sbjct: 174 EEKDITFYDKYELRSFLDTVKDDTFKYTFFYLLAFTGLRKSEALALTWNDVDLNNKRLYV 233

Query: 191 Q---GKGDKIRIVPLLPSVRKAILEY-YDLCPFDL----------NLNI----QLPLFRG 232
                +G+  RI+      +    +   D    D+          N +I    ++ +   
Sbjct: 234 NKTLSRGEHARILVNTTKTKAGKRDISIDASTVDVLKKWKSYQRGNHHILRLDKVQIIFD 293

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
             G   NP     ++  + ++       T+H  RH+ A+ L   G  L+ +Q  LGH  +
Sbjct: 294 NEGNYYNPSSTYSWLDNIFKHHTELKKITSHGFRHTHASLLFEAGASLKDVQERLGHADI 353

Query: 293 STT-QIYTNV 301
            TT  IYT+V
Sbjct: 354 QTTSNIYTHV 363


>gi|15837570|ref|NP_298258.1| hypothetical protein XF0968 [Xylella fastidiosa 9a5c]
 gi|9105898|gb|AAF83778.1|AE003935_4 hypothetical protein XF_0968 [Xylella fastidiosa 9a5c]
          Length = 277

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 65/145 (44%), Gaps = 16/145 (11%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDL 216
           L L YG   R    L L  +   D Q  L  Q   G+    +  P++P     I ++  L
Sbjct: 145 LALAYGTLARPEAILGLR-REFADIQRRLLTQNLPGRKQTKKFRPVVP-----ICDF--L 196

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
            P+ L+++   PL     GKP+    F+   R LR + GLP  T    +RH+ AT L S 
Sbjct: 197 LPWILSVD-SGPLVH-WHGKPI--ASFKTARRALRTHAGLPKDTVPKVIRHTMATELRSA 252

Query: 277 GGDLRSIQSILGHFRLS-TTQIYTN 300
           G   + IQ +LGH   S  T IY  
Sbjct: 253 GMAAQDIQGMLGHRAYSGITDIYAK 277


>gi|54302550|ref|YP_132543.1| hypothetical protein PBPRB0871 [Photobacterium profundum SS9]
 gi|46915972|emb|CAG22743.1| hypothetical protein PBPRB0871 [Photobacterium profundum SS9]
          Length = 243

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 82/218 (37%), Gaps = 70/218 (32%)

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           L++  +  +  E   L++    +S  LP  +  +Q   L+          TK    R   
Sbjct: 79  LQFFYRHTLEKEWQWLDIVKPPQSKKLPDIITAQQVALLISM--------TK--QKRYQI 128

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYD 215
               LY  GLR+ E LSLT  +I  DQ T+++    GKG K R   L+P           
Sbjct: 129 FFLTLYTMGLRLGEGLSLTVHDI--DQHTMQVHIRDGKGGKDR---LVP----------- 172

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
                                     V QR +  LR          AH L     THLL 
Sbjct: 173 --------------------------VPQRTLNALR----------AHWL-----THLLE 191

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G DLRS+Q +LGH  L+TT  YT +      D  + I
Sbjct: 192 QGLDLRSLQILLGHASLNTTARYTRMTQIKQRDAALAI 229


>gi|118579558|ref|YP_900808.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
 gi|118502268|gb|ABK98750.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
          Length = 367

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 93/228 (40%), Gaps = 42/228 (18%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPRALNEKQALTLVDNVLL 143
           ++ R L+ +K+     ++  +  +S +  +R +   K++N   R L   +   LVD+   
Sbjct: 141 TVNRELTALKNMFTKAEQWGLIPDSTLKTVRKVRLTKENNRRLRFLAVAEMTALVDSCSR 200

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----GKGDKIRI 199
                      R   +  L  GC  R  E LSLT  ++      +RI     G+   I I
Sbjct: 201 ---------GLREIVVFALNTGC--RRGEILSLTWDHVDLKHGFIRIADSKNGESRDIPI 249

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
              L  + K ++   D  P+                   NP    RY + ++R       
Sbjct: 250 NAALADMFKGVVRRID-SPYVFT----------------NPDTGTRY-QDVKRSFATACR 291

Query: 260 TTA------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             A      H LRH+FA+HL+ NG DL ++  +LGH  L+ T  Y+++
Sbjct: 292 RAAIMNFHFHDLRHTFASHLVMNGVDLTTVSRLLGHKSLTMTLRYSHL 339


>gi|319902638|ref|YP_004162366.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319417669|gb|ADV44780.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 379

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 13/139 (9%)

Query: 166 CGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLN 222
           CGLR  +  +L  +NI  DD     +     K +    LP   +A+  L   D+   D  
Sbjct: 235 CGLRHCDIAALKWKNIHYDDAHNASLSIVQQKTQEAISLPLSHEAVKYLPERDMAQDDDT 294

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
           +      F G+     +  +  ++ +Q      +    T H  RH+ AT LL+ G DL +
Sbjct: 295 V------FAGLISLSRSNIILDKWAKQA----DIQKHITFHVARHTHATMLLTLGADLYT 344

Query: 283 IQSILGHFRLSTTQIYTNV 301
           +  +LGH  + TTQIY  +
Sbjct: 345 VSKLLGHTNIQTTQIYAKI 363


>gi|222873502|gb|EEF10633.1| predicted protein [Populus trichocarpa]
          Length = 71

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           +L + GDLR++Q +LGH  +STTQIYT ++ ++    + + Y+  HP
Sbjct: 1   MLQSSGDLRAVQELLGHASISTTQIYTRLDFQH----LAQAYESAHP 43


>gi|150008734|ref|YP_001303477.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149937158|gb|ABR43855.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 368

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 19/147 (12%)

Query: 163 LYGC--GLRISEALSLTPQN--IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           L+ C  GLRIS+ L L  ++  +  DQ    I+   +K      LP  ++A+    +LC 
Sbjct: 225 LFACMTGLRISDILKLDWRDFEVGPDQGYY-IRICTEKTETEATLPISQEAL----ELCG 279

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
                 +   L R +   PL   + +  IR+           T H  RHS+A   +S G 
Sbjct: 280 EWSTGKVFKGLTRSMTHHPLKQWITEAGIRK---------HITFHCFRHSYAVIQISLGT 330

Query: 279 DLRSIQSILGHFRLSTTQIYTN-VNSK 304
           D+ ++  +L H  ++TTQIY + VNSK
Sbjct: 331 DIYTVSKMLTHKNVTTTQIYADLVNSK 357


>gi|139473904|ref|YP_001128620.1| phage integrase [Streptococcus pyogenes str. Manfredo]
 gi|225871356|ref|YP_002747303.1| phage integrase [Streptococcus equi subsp. equi 4047]
 gi|134272151|emb|CAM30396.1| phage integrase [Streptococcus pyogenes str. Manfredo]
 gi|225700760|emb|CAW95414.1| phage integrase [Streptococcus equi subsp. equi 4047]
          Length = 379

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 67/162 (41%), Gaps = 25/162 (15%)

Query: 163 LYGCGLRISEALSLTPQNIMDD----QSTLRIQGKG--DKIRIVP---------LLPSVR 207
           L GC  RI EAL++ P NI +D      TL     G  + I+  P         L+    
Sbjct: 205 LNGC--RIGEALAIQPDNIKNDIIEIHGTLDYTSNGYRNAIKTTPKTNSSWRETLITKRE 262

Query: 208 KAIL-EYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-- 260
           K I+ +   +   + N N        +F    G P+        IR   + L  P+    
Sbjct: 263 KEIIQDILKINALEKNTNPNYKDMGYIFISRNGVPIQDNALNTSIRAANKRLEKPIQKEL 322

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           T+H  RH+  + L  N   L++I   +GH    TT QIYT+V
Sbjct: 323 TSHIFRHTLVSRLAENKVPLKTIMDRVGHADSKTTQQIYTHV 364


>gi|319902467|ref|YP_004162195.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319417498|gb|ADV44609.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 418

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 20/166 (12%)

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKI 197
           +L    H+ +   AR++ I   L   GL  ++   L P +I    + +  +RI  +  KI
Sbjct: 227 ILATPMHDRRMELARHAFIFSSL--TGLAYADIELLYPHHIGANAEGRRYIRINRRKTKI 284

Query: 198 R-IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLG 255
              +PL P   K IL  Y+        N + P+F      PL +       I +L   +G
Sbjct: 285 EAFIPLHPIAEK-ILTLYNTT------NDEQPVF------PLPSRDALWFEIHELGVAIG 331

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              + + H  RHSF T L+S G  + SI  ++GH  +STTQ Y  +
Sbjct: 332 KEENLSYHAARHSFGTFLISAGLPIESIAKMMGHSNISTTQGYARI 377


>gi|255008467|ref|ZP_05280593.1| putative bacteriophage integrase [Bacteroides fragilis 3_1_12]
 gi|313146195|ref|ZP_07808388.1| site-specific recombinase [Bacteroides fragilis 3_1_12]
 gi|313134962|gb|EFR52322.1| site-specific recombinase [Bacteroides fragilis 3_1_12]
          Length = 380

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 9/137 (6%)

Query: 166 CGLRISEALSLTPQNIMDDQ-STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
           CGLR S+ ++LT  N+  ++   + +     K + +  LP   +A+ +     P      
Sbjct: 236 CGLRHSDIVALTWGNLKKNKIGKIELHMTQQKTQELLSLPLSNEALKQ----LPVRGKAQ 291

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
               +F+G+        +  R+  +     G+    T H+ RH+ AT +++ G DL ++ 
Sbjct: 292 DTEKVFKGLISLGRTNEILPRWAAKA----GIQKHITFHSARHTHATMMITLGADLYTVS 347

Query: 285 SILGHFRLSTTQIYTNV 301
            +LGH  + TTQIY  +
Sbjct: 348 KLLGHTNIQTTQIYAKI 364


>gi|227892499|ref|ZP_04010304.1| tyrosine recombinase [Lactobacillus ultunensis DSM 16047]
 gi|227865620|gb|EEJ73041.1| tyrosine recombinase [Lactobacillus ultunensis DSM 16047]
          Length = 356

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 6/154 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI+ L+ G G+R+SE   +  Q++    + L +  KG +   VP+       I +Y 
Sbjct: 189 RDMAIIALILGTGIRVSECAGVDLQDLNLKDAVLDVTRKGGQKDSVPIAEWTLDYIQKYK 248

Query: 215 DLCPFDLNLNIQLPLFRGIR----GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            +       + Q   F   R     + +     ++ + +     G PL  T H LRH+ A
Sbjct: 249 TIRRNRYMADPQQTAFFLTRWHNQTRRITTNAIEKMVNKYSAAFGHPL--TPHKLRHTLA 306

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + L     D   +   LG    + T +YT+V+ K
Sbjct: 307 SELYEVTKDQVLVAQQLGQKGTTATDLYTHVDQK 340


>gi|197303476|ref|ZP_03168515.1| hypothetical protein RUMLAC_02198 [Ruminococcus lactaris ATCC
           29176]
 gi|197297474|gb|EDY32035.1| hypothetical protein RUMLAC_02198 [Ruminococcus lactaris ATCC
           29176]
          Length = 426

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 95/198 (47%), Gaps = 30/198 (15%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---------------GKGDK-IRIVPL 202
           ++Y+L+  G+RISE   LT ++I  +  T+ I                 K D   R++P+
Sbjct: 220 VVYILFHTGMRISEFCGLTLKDIDLENRTVNIDHQLQRTSDMRYIIETTKTDAGTRVLPI 279

Query: 203 LPSVRK---AILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQ-RYIRQLRRY---- 253
              V +   AI+E  +    + +++     LF    G PL    +Q R+   + RY    
Sbjct: 280 TEDVAQMFQAIIEDRNAPKVEKSIDGYSGFLFYDDNGMPLVAMHWQHRFNHMVGRYNDIY 339

Query: 254 -LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM- 310
            + +P + T H  RH++ +++  +G + +++Q ++GH  +S T  +YT++   +  + + 
Sbjct: 340 RVQIP-NITPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNVYTHIGFDDAEEELK 398

Query: 311 -MEIYDQTHPSITQKDKK 327
            ME + +    + QK +K
Sbjct: 399 RMEEFRKAQAEVEQKKEK 416


>gi|331002078|ref|ZP_08325597.1| hypothetical protein HMPREF0491_00459 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411172|gb|EGG90588.1| hypothetical protein HMPREF0491_00459 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 309

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 11/145 (7%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-----KGDKIRIVPLLPSVRKAILEYY 214
           + LL   G+R SE L++TP +      T+ +       +G          SVRK  +++ 
Sbjct: 142 ILLLAKTGMRFSEGLAITPNDFDFAHQTVSVNKTWNYKEGGGFSPTKNKSSVRKVQIDWQ 201

Query: 215 DLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
            +  F     +L    P+F    GK  N  V    +R  ++ L +P+  + H LRH+ A+
Sbjct: 202 VVMQFATLVKDLPSDKPIFVK-DGKVYNSTVNDILVRYCKK-LNIPI-ISVHGLRHTHAS 258

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQ 296
            LL  G  + S+   LGH  ++TTQ
Sbjct: 259 ILLYAGVSIASVARRLGHASMTTTQ 283


>gi|300713231|ref|YP_003739270.1| Site-specific recombinase [Erwinia billingiae Eb661]
 gi|299060302|emb|CAX53552.1| Site-specific recombinase [Erwinia billingiae Eb661]
          Length = 263

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 73/171 (42%), Gaps = 36/171 (21%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQS------------TLRIQGKGDKIRIV 200
           D ++  +   L+  G RI EA SLTP++ + D              + R +   D +R+V
Sbjct: 77  DRKHHFLFSTLWNTGARIGEACSLTPESFVLDGPRPFVRILSEKVRSRRGRPPKDAVRLV 136

Query: 201 PLLPS--VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV---FQRYIRQLRRYLG 255
           PL  +  VR+              + + +   R  R +PL        + +++   R   
Sbjct: 137 PLTDTGYVRQ--------------VEVWMASVRPKRREPLWTATDETMRNWLKAAVRRAA 182

Query: 256 -----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                  ++ T HT RHS+  H+L +   L+ IQ++ GH    + ++YT V
Sbjct: 183 EDGVQFSIAVTPHTFRHSWIMHMLYHRQPLKVIQALAGHKDARSVEVYTRV 233


>gi|293413559|ref|ZP_06656208.1| type 1 fimbriae regulatory protein FimB [Escherichia coli B185]
 gi|291433617|gb|EFF06590.1| type 1 fimbriae regulatory protein FimB [Escherichia coli B185]
          Length = 206

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 61/150 (40%), Gaps = 1/150 (0%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILEY 213
           RN  ++ + +  G R SE L L   +I      L I+   +      PLLP     I  +
Sbjct: 45  RNRCLIMMAFIHGFRASELLDLRLSDIDASGKQLNIRRIKNGFSTTHPLLPDEYNLIKLW 104

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                   N      LF   + +P++   F   IR+  R  GL +    H LRH+    L
Sbjct: 105 LKQRKLIENGVEGDWLFLSRKRRPISRQHFFSIIREAGRRAGLAVKAHPHMLRHACGFAL 164

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             NG D R +Q  LGH  +  T  YT  N+
Sbjct: 165 ADNGVDTRLLQDYLGHRNIQHTVRYTASNA 194


>gi|189184115|ref|YP_001937900.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189180886|dbj|BAG40666.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
          Length = 107

 Score = 45.4 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 39/55 (70%), Gaps = 2/55 (3%)

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN 302
           ++R+   +P + T H LR +FAT  ++NG +LR+I  +LGH R+STT +IYT ++
Sbjct: 24  KIRKKARIP-NVTIHDLRRTFATWSINNGEELRTIAEMLGHSRISTTAEIYTKIS 77


>gi|94990305|ref|YP_598405.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS10270]
 gi|94994227|ref|YP_602325.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS10750]
 gi|94543813|gb|ABF33861.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS10270]
 gi|94547735|gb|ABF37781.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS10750]
          Length = 379

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 67/162 (41%), Gaps = 25/162 (15%)

Query: 163 LYGCGLRISEALSLTPQNIMDD----QSTLRIQGKG--DKIRIVP---------LLPSVR 207
           L GC  RI EAL++ P NI +D      TL     G  + I+  P         L+    
Sbjct: 205 LNGC--RIGEALAIQPDNIKNDIIEIHGTLDYTSNGYRNAIKTTPKTNSSWRETLITKRE 262

Query: 208 KAIL-EYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-- 260
           K I+ +   +   + N N        +F    G P+        IR   + L  P+    
Sbjct: 263 KEIIQDILKINALEKNTNPNYKDMGYIFISRNGVPIQDNALNTSIRAANKRLEKPIQKEL 322

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           T+H  RH+  + L  N   L++I   +GH    TT QIYT+V
Sbjct: 323 TSHIFRHTLVSRLAENKVPLKTIMDRVGHADSKTTQQIYTHV 364


>gi|94988426|ref|YP_596527.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS9429]
 gi|94541934|gb|ABF31983.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS9429]
          Length = 379

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 67/162 (41%), Gaps = 25/162 (15%)

Query: 163 LYGCGLRISEALSLTPQNIMDD----QSTLRIQGKG--DKIRIVP---------LLPSVR 207
           L GC  RI EAL++ P NI +D      TL     G  + I+  P         L+    
Sbjct: 205 LNGC--RIGEALAIQPDNIKNDIIEIHGTLDYTSNGYRNAIKTTPKTNSSWRETLITKRE 262

Query: 208 KAIL-EYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-- 260
           K I+ +   +   + N N        +F    G P+        IR   + L  P+    
Sbjct: 263 KEIIQDILKINALEKNTNPNYKDMGYIFISRNGVPIQDNALNTSIRAANKRLEKPIQKEL 322

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           T+H  RH+  + L  N   L++I   +GH    TT QIYT+V
Sbjct: 323 TSHIFRHTLVSRLAENKVPLKTIMDRVGHADSKTTQQIYTHV 364


>gi|15674956|ref|NP_269130.1| putative integrase [Streptococcus pyogenes M1 GAS]
 gi|13622101|gb|AAK33851.1| putative integrase - phage associated [Streptococcus pyogenes M1
           GAS]
          Length = 379

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 67/162 (41%), Gaps = 25/162 (15%)

Query: 163 LYGCGLRISEALSLTPQNIMDD----QSTLRIQGKG--DKIRIVP---------LLPSVR 207
           L GC  RI EAL++ P NI +D      TL     G  + I+  P         L+    
Sbjct: 205 LNGC--RIGEALAIQPDNIKNDIIEIHGTLDYTSNGYRNAIKTTPKTNSSWRETLITKRE 262

Query: 208 KAIL-EYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-- 260
           K I+ +   +   + N N        +F    G P+        IR   + L  P+    
Sbjct: 263 KEIIQDILKINALEKNTNPNYKDMGYIFISRNGVPIQDNALNTSIRAANKRLEKPIQKEL 322

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           T+H  RH+  + L  N   L++I   +GH    TT QIYT+V
Sbjct: 323 TSHIFRHTLVSRLAENKVPLKTIMDRVGHADSKTTQQIYTHV 364


>gi|325956878|ref|YP_004292290.1| site-specific tyrosine recombinase XerS [Lactobacillus acidophilus
           30SC]
 gi|325333443|gb|ADZ07351.1| site-specific tyrosine recombinase XerS [Lactobacillus acidophilus
           30SC]
 gi|327183657|gb|AEA32104.1| site-specific tyrosine recombinase XerS [Lactobacillus amylovorus
           GRL 1118]
          Length = 358

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 6/154 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI+ L+ G G+R+SE   +  Q++    + L +  KG +   VP+       I +Y 
Sbjct: 189 RDMAIIALILGTGIRVSECAGVDLQDLNLKDAVLDVTRKGGQKDSVPIAEWTLDYIQKYK 248

Query: 215 DLCPFDLNLNIQLPLFRGIR----GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           ++     + + +   F   R     + +     ++ + +     G PL  T H LRH+ A
Sbjct: 249 NIRMKRYSADQKETAFFLTRWHNQTRRITTNAIEKMVNKYSAAFGHPL--TPHKLRHTLA 306

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + L     D   +   LG    + T +YT+V+ K
Sbjct: 307 SELYEVTKDQVLVAQQLGQKGTTATDLYTHVDQK 340


>gi|291551262|emb|CBL27524.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 413

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 90/239 (37%), Gaps = 50/239 (20%)

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           RN  K+  +  AL  +Q    +D +     +   W       +   L G G+RI E   L
Sbjct: 176 RNSGKNKGIRHALTIEQQQAFMDTIRTFPEY-YHWY-----PLFATLLGTGMRIGECTGL 229

Query: 177 TPQNIMDDQSTLRIQGKGD-------------------KIRIVPLLPSVRKAILEYYD-- 215
           T  ++   +  + +                         IR +P++ +V  A+   YD  
Sbjct: 230 TWNDVDFKRRCISVNHAATYYTRNGVAGFAISRPKTEAGIRQIPMMDAVYNALKNEYDRQ 289

Query: 216 ----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI----------------RQLRRYLG 255
                C ++L+  +   +F    G   NP      I                R+ R  + 
Sbjct: 290 KKDGFCTYELD-GVSGFIFSNKLGLLHNPHCVNLAIKRIYEAHNAREIIDAKREHREPII 348

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           +P   + H LRH+F + L  +  +++ IQ I+GH  + TT  IYT VN     D + E+
Sbjct: 349 IP-HFSCHVLRHTFCSRLCESDMNVKVIQEIMGHKNVETTLDIYTEVNYNKKKDSLEEL 406


>gi|262383655|ref|ZP_06076791.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262294553|gb|EEY82485.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 407

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 9/96 (9%)

Query: 218 PFDLNL-NIQLPLFR--------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           PF + L +I L + R        G+    LN     + ++Q+ +  G+    + H  RH 
Sbjct: 288 PFQVKLLDIPLQIIRRYERFQENGLVFPNLNYWSICKPLKQMIKECGITKEISFHCARHG 347

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           FAT  LS G  + S+  ILGH  ++TTQ Y  + ++
Sbjct: 348 FATLALSKGMPIESVSRILGHTNITTTQKYAKITTE 383


>gi|189463527|ref|ZP_03012312.1| hypothetical protein BACCOP_04246 [Bacteroides coprocola DSM 17136]
 gi|189429764|gb|EDU98748.1| hypothetical protein BACCOP_04246 [Bacteroides coprocola DSM 17136]
          Length = 102

 Score = 45.4 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           G  +  ++++   +G  +  + H  RH+FAT  LS G  L ++Q +LGH  + +TQ+Y  
Sbjct: 18  GSMEDSLKRIGEKVGCSVRVSPHVGRHTFATLALSKGMPLETLQKVLGHKTIISTQVYAE 77

Query: 301 -VNSKNGGD 308
            +N K G D
Sbjct: 78  LINPKIGED 86


>gi|331087780|ref|ZP_08336706.1| hypothetical protein HMPREF1025_00289 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330409761|gb|EGG89197.1| hypothetical protein HMPREF1025_00289 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 400

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 30/43 (69%), Gaps = 1/43 (2%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVN 302
           T HTLRH++AT    NG D + +Q +LGH  L+ TT +YT+V+
Sbjct: 343 TCHTLRHTYATRCYENGVDQQVVQKLLGHSTLAMTTDLYTHVS 385


>gi|315644600|ref|ZP_07897732.1| integrase family protein [Paenibacillus vortex V453]
 gi|315280107|gb|EFU43404.1| integrase family protein [Paenibacillus vortex V453]
          Length = 268

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 29/39 (74%), Gaps = 1/39 (2%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTN 300
           H LRHSFA+ L + G DL++I  ILGH  LSTT +IYT+
Sbjct: 205 HDLRHSFASILYAEGVDLKAISEILGHSDLSTTNKIYTH 243


>gi|260593521|ref|ZP_05858979.1| integrase [Prevotella veroralis F0319]
 gi|260534509|gb|EEX17126.1| integrase [Prevotella veroralis F0319]
          Length = 417

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 111/265 (41%), Gaps = 37/265 (13%)

Query: 53  YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
           Y  E I +Q        ++  + +K +  K+   +    L+ + S LK L KR I    +
Sbjct: 153 YHVEDIPVQKADIAFIKDLEDYFAKEKGFKLNTSA--GYLTMLASLLKDLHKRHIIDTYS 210

Query: 113 ILNMRNLKKSNSLPRALNEKQA---LTLVDNVLLHTSHETKWIDARNSAILYLLYGC--G 167
            +   +++     PR +  ++      L DN L      ++ +          L+ C  G
Sbjct: 211 FIG-HSIRWDVGTPRYITREEVSRIAALSDNELQGYEQVSRDM---------FLFSCYTG 260

Query: 168 LRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
           L  ++   LT ++I+ +     I+    K   I  +PLLP    AI+E Y          
Sbjct: 261 LSYTDVYHLTAEHIIHESDMDWIRKPRVKTGNICYIPLLPEAF-AIIERYK--------G 311

Query: 225 IQLPLFRGIRGK----PLNPGV--FQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNG 277
           I    FR    K    P+ PG      +++++ R   +    T H  RH+FA+ + LS G
Sbjct: 312 IHTRAFRHEPPKGYLLPI-PGCDTVNIHLKKIARLCDIKKILTFHMARHTFASQMTLSEG 370

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVN 302
             + S+  +LGH ++ TTQ+Y   +
Sbjct: 371 VSIESVSKMLGHSQIKTTQVYAETS 395


>gi|210616044|ref|ZP_03290916.1| hypothetical protein CLONEX_03135 [Clostridium nexile DSM 1787]
 gi|210149952|gb|EEA80961.1| hypothetical protein CLONEX_03135 [Clostridium nexile DSM 1787]
          Length = 400

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 30/43 (69%), Gaps = 1/43 (2%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVN 302
           T HTLRH++AT    NG D + +Q +LGH  L+ TT +YT+V+
Sbjct: 343 TCHTLRHTYATRCYENGVDQQVVQKLLGHSTLAMTTDLYTHVS 385


>gi|57867419|ref|YP_189034.1| Tn554-related, transposase A [Staphylococcus epidermidis RP62A]
 gi|282919766|ref|ZP_06327498.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp.
           aureus C427]
 gi|283771081|ref|ZP_06343972.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp.
           aureus H19]
 gi|293367758|ref|ZP_06614407.1| transposase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|57638077|gb|AAW54865.1| Tn554-related, transposase A [Staphylococcus epidermidis RP62A]
 gi|282316404|gb|EFB46781.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp.
           aureus C427]
 gi|283459675|gb|EFC06766.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp.
           aureus H19]
 gi|283471202|emb|CAQ50413.1| transposition regulatory protein TnpA [Staphylococcus aureus subsp.
           aureus ST398]
 gi|291318097|gb|EFE58494.1| transposase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|323464882|gb|ADX77035.1| Tn554-related, transposase A [Staphylococcus pseudintermedius ED99]
 gi|329734754|gb|EGG71060.1| phage integrase, N-terminal SAM domain protein [Staphylococcus
           epidermidis VCU045]
 gi|329734787|gb|EGG71092.1| phage integrase, N-terminal SAM domain protein [Staphylococcus
           epidermidis VCU028]
          Length = 370

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 90/212 (42%), Gaps = 26/212 (12%)

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
           KSF+ ++ K    T  NIL ++  KK   +      K+ L   +N+             R
Sbjct: 143 KSFMHHINK-DYRTLKNILKVKEPKKKIEVLTNAEVKKLLEEANNI-------------R 188

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDD-----QSTL--RIQGKGDKIRIVPLLPSVRK 208
           +  ++ LLY  GLRI E LSL   +I  D     Q  L  R    G  ++       + +
Sbjct: 189 DKFLIQLLYETGLRIGEVLSLRIDDIKFDFRKGHQIVLKNRFNDNGTYLKTGERKIFISQ 248

Query: 209 AILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT- 264
           ++++ YD   +++   + +    LF  I+G+ +   +    I  L + L    S   H  
Sbjct: 249 SLIDLYDDYVYEIIDELSICSDYLFVKIKGRNVGEAMNYSDIYSLFKRLKHKTSINVHPH 308

Query: 265 -LRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             RH+ AT   +   D++ +Q  LGH  + TT
Sbjct: 309 LFRHTHATVFYNETKDIKQVQERLGHSNIQTT 340


>gi|294338516|emb|CAZ86845.1| putative phage integrase [Thiomonas sp. 3As]
          Length = 399

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 16/135 (11%)

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI------------- 197
           ++  RN  I+ LL   G+R  E L L   +I    S L +  + D               
Sbjct: 202 FVRHRNWVIVMLLLATGMRSGELLGLQISDIKQQLSKLGVLRRADASEDTRRTPVGTKTN 261

Query: 198 -RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYL- 254
            R + LLP + +A+L + ++  + +    + P +F    GKPL+     +  +QLR    
Sbjct: 262 DRELELLPGIMRALLAHINVERYRIRAARRHPQVFVAQDGKPLSTRSIGKLFQQLRAACP 321

Query: 255 GLPLSTTAHTLRHSF 269
           GLP++ T+H +RH++
Sbjct: 322 GLPVTLTSHVMRHTW 336


>gi|253571743|ref|ZP_04849149.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251838951|gb|EES67036.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 435

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYT 299
           G F    R+L +  G  L  T H  RH+F TH+ LS G  + ++  ++GH  +STTQ+Y 
Sbjct: 335 GYFILLTRELGKVYGFDL--TFHQARHNFGTHVTLSLGVPIETVSRMMGHMSISTTQLYA 392

Query: 300 NVNSKNGGDWMMEIYDQTHPSITQ 323
            V  K   + M  +      S T+
Sbjct: 393 QVTDKKVDEDMKALKASGFSSTTE 416


>gi|209559283|ref|YP_002285755.1| Prophage ps2 probable integrase [Streptococcus pyogenes NZ131]
 gi|209540484|gb|ACI61060.1| Prophage ps2 probable integrase [Streptococcus pyogenes NZ131]
          Length = 379

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 67/162 (41%), Gaps = 25/162 (15%)

Query: 163 LYGCGLRISEALSLTPQNIMDD----QSTLRIQGKG--DKIRIVP---------LLPSVR 207
           L GC  RI EAL++ P NI +D      TL     G  + I+  P         L+    
Sbjct: 205 LNGC--RIGEALAIQPDNIKNDIIEIHGTLDYTSNGYRNAIKTTPKTNSSWRETLITKRE 262

Query: 208 KAIL-EYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-- 260
           K I+ +   +   + N N        +F    G P+        IR   + L  P+    
Sbjct: 263 KEIIQDILKINALEKNTNPNYKDMGYIFISRNGVPIQDNALNTSIRAANKRLEKPIQKEL 322

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           T+H  RH+  + L  N   L++I   +GH    TT QIYT+V
Sbjct: 323 TSHIFRHTLVSRLAENKVPLKTIMDRVGHADSKTTQQIYTHV 364


>gi|126664741|ref|ZP_01735725.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126664866|ref|ZP_01735850.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126666648|ref|ZP_01737626.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126666884|ref|ZP_01737860.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126667019|ref|ZP_01737994.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126667759|ref|ZP_01738727.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126669122|ref|ZP_01740051.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126626418|gb|EAZ97086.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126627862|gb|EAZ98491.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126628425|gb|EAZ99047.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126628600|gb|EAZ99221.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126629036|gb|EAZ99655.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126631067|gb|EBA01681.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126631192|gb|EBA01806.1| phage-related integrase [Marinobacter sp. ELB17]
          Length = 315

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 4/129 (3%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           +  R +  ++ F ++ ++    TE    ++        +P    E +  TL++    H  
Sbjct: 67  TWARRIGILRGFARFCQREDPATEVPPRSLFGSAHRRLIPHIYTEAELCTLLEAT--HGL 124

Query: 147 HETKWI-DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLP 204
             T+ +  A    +  LL   GLRI+EAL+LT  ++  D   L I + K  + R+VPL P
Sbjct: 125 APTEGLRPATCHCVFGLLAATGLRIAEALTLTAADVDMDSGVLHIREAKFHQQRLVPLHP 184

Query: 205 SVRKAILEY 213
           SV  ++  Y
Sbjct: 185 SVTDSLRAY 193


>gi|325264365|ref|ZP_08131096.1| putative integrase/recombinase, phage integrase family [Clostridium
           sp. D5]
 gi|324030436|gb|EGB91720.1| putative integrase/recombinase, phage integrase family [Clostridium
           sp. D5]
          Length = 279

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 9/148 (6%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           IL  L G G+RISE   +T   +   ++ + ++GK    R+V L   ++  + +Y  L  
Sbjct: 128 ILLTLCGTGIRISELKYITANAVRQGRAEINMKGKH---RVVLLPKELKSRLKKYMGLKN 184

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNG 277
            +     +  +F    G P++       +++L    G+       H LRH FA    +  
Sbjct: 185 IE-----EGCVFITKNGNPVDRSNIFHEMKKLSSAAGVEQQKVYPHNLRHLFARSFYAVE 239

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +L  +  ILGH  + TT+IY   + +N
Sbjct: 240 KNLSHLADILGHSSIETTRIYVASSYRN 267


>gi|315657216|ref|ZP_07910100.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315492319|gb|EFU81926.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 381

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 25/167 (14%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--------------GKGDKIRIVPLLP 204
           ++ LL   GLRI EAL+LTP  +  D+  +RI+               K  + R+VP+  
Sbjct: 205 LMRLLGYTGLRIGEALALTPAALDLDRRIMRIERAVSEVSGRQVFGTPKNGRTRVVPIPD 264

Query: 205 SVRKA--ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            +R+   +L        D        LF    G PL     + +       +G       
Sbjct: 265 FLRRDLRVLTRATRGGDDF-------LFATKHGTPLRASNLRLHFDMAALAVG-QAGLHI 316

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGD 308
           H LRH+ AT  +S G +++S+Q +LGH   S T  +Y ++   + GD
Sbjct: 317 HDLRHTAATLAVSAGANVKSVQRMLGHSSASLTLDVYADLFEPDLGD 363


>gi|124006309|ref|ZP_01691144.1| phage integrase family protein [Microscilla marina ATCC 23134]
 gi|123988233|gb|EAY27891.1| phage integrase family protein [Microscilla marina ATCC 23134]
          Length = 400

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 90/216 (41%), Gaps = 19/216 (8%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL--LHTSHET 149
           LS IK  +K+  K     +  I  +  +K+  +L     +     L  +VL  L    +T
Sbjct: 184 LSAIKELVKFCLKNYQMADGQIKALNEVKEVKTLKTNTKKYYKNALPPDVLKRLIAGEDT 243

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG----DKIRIVPLLPS 205
           +W     +A   ++  CGLR+ E  +L   ++  D   L++ GKG    +++++      
Sbjct: 244 RW-----AAYWGIMGYCGLRVKELQALKWADVDFDLDILKVLGKGQNTKEEVKLFGKAKV 298

Query: 206 VRKAIL-EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           + +A L E  +     L  N ++  +         P ++  +   L+         + H+
Sbjct: 299 LLRAFLGEAKETVQGSLPKNFEICSYS-------YPTLYNHFKASLKAIGVDETKYSLHS 351

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           LRH+    +L +G  L  +Q  L H    TT +Y N
Sbjct: 352 LRHTCGQQMLESGNPLEFVQRQLRHASTDTTAVYVN 387


>gi|288801169|ref|ZP_06406624.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331780|gb|EFC70263.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 439

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 24/155 (15%)

Query: 162 LLYGC--GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVR-------- 207
            ++ C  GL I++   LT  +I    D Q  +R + +  K+  IVPL P  +        
Sbjct: 243 FIFSCFTGLAITDMEHLTFGHIKSAADGQMYIRKERQKTKVEFIVPLHPIAKTIIEQQRQ 302

Query: 208 -KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            KA+ E  +    D  L  Q    R +    L+          + +  G+    + H  R
Sbjct: 303 LKAVKEEGNNTDMDNRLIFQPCCSRSVLAAKLSI---------VGKACGIKQRLSYHMGR 353

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H+F T  LS G  + SI  ++GH  +++TQIY  V
Sbjct: 354 HTFGTMCLSAGIPIESIAKMMGHTSIASTQIYAQV 388


>gi|229199836|ref|ZP_04326430.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus m1293]
 gi|228583643|gb|EEK41867.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus m1293]
          Length = 319

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 131/306 (42%), Gaps = 31/306 (10%)

Query: 8   EIVSFELLKERQNWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEEK----ITI 60
           EI    + +E +N +++  IE+   G +  TLQ Y  D R  L  L  + E K    +T 
Sbjct: 8   EIYEKYVSQENKNLVKDFLIEKKAQGKAASTLQQYHWDLRIILFLLHQHFENKNLIELTR 67

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILN-MRN 118
           + IR LS       +S  R   +        +S ++S L++         E N+ + +R 
Sbjct: 68  KDIRNLSIIFQELGMSNARVNGL--------MSALRSALEFCADDDDYDYEFNVGSRVRG 119

Query: 119 LKKSNSLP-RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           L K+       + E+Q   L+D +L     + K++ A     L L Y    R +E   + 
Sbjct: 120 LPKNPVREITFITEEQIEWLIDELL----EQEKYMLA---TYLALSYYSAARKNEVYQVQ 172

Query: 178 PQNIMDDQSTLRIQGK-GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
            + + +   T  ++GK G K R+    P V+K I  Y +    D+  ++ + +++    K
Sbjct: 173 KEELTERYFTNVVRGKRGKKFRLY-YNPRVQKCIRLYIEQRGKDVIPDLFVRVYKNGERK 231

Query: 237 PLNPGVFQRYIRQLRRYL----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
            LN  VF  + +   + L    G       H  RHS   +L   G  L  ++S+  H  +
Sbjct: 232 LLNKSVFNYWCKIFSKMLYEKEGKEYKMNPHCFRHSRLDNLKVQGVPLEKLKSLANHSDI 291

Query: 293 STTQIY 298
           STTQ Y
Sbjct: 292 STTQSY 297


>gi|227329213|ref|ZP_03833237.1| phage integrase [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 343

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%)

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           LP     H LRH+FA+H + NGG++  +Q ILGH  +  T  Y +
Sbjct: 277 LPDGQKTHVLRHTFASHFMMNGGNILVLQRILGHANIRETMKYAH 321


>gi|149918868|ref|ZP_01907354.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
 gi|149820242|gb|EDM79659.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
          Length = 120

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           HTLRH+F +HL   G   R IQ + GH  L TTQ Y ++ S    +  + + +Q  P + 
Sbjct: 37  HTLRHTFCSHLAMRGAAARVIQQLAGHASLVTTQRYMHL-SPGATEAAIALLEQPAPVLK 95

Query: 323 QKDKK 327
             + K
Sbjct: 96  PAEPK 100


>gi|94990536|ref|YP_598636.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes
           MGAS10270]
 gi|94544044|gb|ABF34092.1| Integrase/recombinase xerD [Streptococcus pyogenes MGAS10270]
          Length = 368

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 128/330 (38%), Gaps = 64/330 (19%)

Query: 12  FELLKERQ---NWLQNLEIER--GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           +E LKE +   +WL + ++ +   ++ + L + E  T++ L     Y  E+ ++ T    
Sbjct: 51  YEYLKEYKRFFDWLMDADLTKVPKIADIDLSTLEHLTKKDLEAFVLYLRERPSLNTYST- 109

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL- 125
                         + +   ++ R+LS + S  KYL +     +      RN+ K  S  
Sbjct: 110 -------------KEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTK 156

Query: 126 -------PRALNEKQALTLVDNVLLHTSHETKWID---------------ARNSAILYLL 163
                   RA N KQ L L D  L    +  K  +                R+ AI+ LL
Sbjct: 157 KKKETLASRAENIKQKLFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALL 216

Query: 164 YGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKAIL--------- 211
              G+R+SEA++L  +++   M     +R  GK D + +        ++ L         
Sbjct: 217 LASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDSVNVAGFAKGYLESYLAVRQRRYKA 276

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           E  DL  F       L  +RG+  + ++    ++ + +        +  T H LRH+ AT
Sbjct: 277 EKQDLAFF-------LTEYRGVPNR-MDASSIEKMVGKYSE--DFKIRVTPHKLRHTLAT 326

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            L         +   LGH     T +YT++
Sbjct: 327 RLYDATKSQVLVSHQLGHSSTQVTDLYTHI 356


>gi|186686659|ref|YP_001869854.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186469693|gb|ACC85489.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
          Length = 200

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 74/162 (45%), Gaps = 13/162 (8%)

Query: 155 RNSAILYLLYGCGLRISEALS----LTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKA 209
           R+  ++ L++  GLR+ EA+     L    +M  +  + I + KG    + PL       
Sbjct: 42  RDYTLMLLMFRHGLRVGEAVGAKCGLRWDALMWAERQIFITREKGSDSGVHPLRDDELVL 101

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           + E  ++ P    +      F   RG+ ++    ++ + +L    GL +    H +RH+ 
Sbjct: 102 LKELREMLPDSKYI------FVSERGEVMSTDAVRKLLGRLAAQAGLDIKVHCHMMRHAC 155

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN--GGDW 309
             +L++ G + R IQ  LGH  +  T+ YT +N++     DW
Sbjct: 156 GYYLVNQGYNTREIQDFLGHRDIKHTEKYTKLNARRFLNFDW 197


>gi|301308789|ref|ZP_07214741.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300833313|gb|EFK63931.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 310

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 10/139 (7%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G+   +   L  +N+ D   +   Q  G  IR+   +P+  + +L+   +C  D +    
Sbjct: 147 GMAFVDFAHLRKENVKDGVLSYHRQKSGSFIRVE--IPADVRLLLDELAVCT-DKDSPYL 203

Query: 227 LPLFRGIRG-----KPLNPGV--FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
            P   G +         N  +  F R +R L    G+    T++T+RHSFAT L      
Sbjct: 204 FPFLSGKKTGEAAYAEYNGALLRFNRNLRSLAETCGVGEPVTSYTIRHSFATTLKEQDVP 263

Query: 280 LRSIQSILGHFRLSTTQIY 298
           +  I  +LGH  + TTQIY
Sbjct: 264 IEMISELLGHTSIKTTQIY 282


>gi|295099640|emb|CBK88729.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87]
          Length = 164

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 71/158 (44%), Gaps = 12/158 (7%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           NL +    SK T+++Y  D   ++ +L      +  I  + +++   +  +++   T++ 
Sbjct: 13  NLSLVENKSKKTIEAYMSDLTHYINYL-----NQKNINNVEEITILTVDNYLNSM-TKEY 66

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
              S+ R L+ ++SF K++     + +   L +   K +  LP   + +    L D    
Sbjct: 67  SSNSINRVLASVRSFHKFISLNHESIKDPTLYIHTHKHNEHLPIYASVQDLKVLFD---- 122

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
             S     ID  +  IL  LY CGLR+SE  SL   ++
Sbjct: 123 --SFSNSDIDIYHKTILLTLYSCGLRVSELCSLKRNDV 158


>gi|291288449|ref|YP_003505265.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290885609|gb|ADD69309.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 397

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 13/151 (8%)

Query: 150 KWIDARNSAILYL--LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
           K+ +   SA+L L  L   G R  E L+L  +NI ++ + L I       + VP+   V 
Sbjct: 224 KYEEKYYSAVLALRLLMYTGCRKEEILTLKWENIKNELNLLHIPKSKTGEKNVPVSHEVL 283

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             +   Y +  +      +     G+          Q+   +LR+  GL      H LRH
Sbjct: 284 DMLENAYKVNEYVCFGKFENSRLIGL----------QKIWERLRKEAGLE-DVRIHDLRH 332

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           SFA+  +S G ++  I  +LGH R++TT+ Y
Sbjct: 333 SFASTAISGGINIEFISKLLGHKRITTTEYY 363


>gi|332749399|gb|EGJ79817.1| phage integrase family protein [Shigella flexneri 4343-70]
 gi|332996513|gb|EGK16139.1| phage integrase family protein [Shigella flexneri K-218]
          Length = 198

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 66/158 (41%), Gaps = 2/158 (1%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILE 212
           AR+  ++ L Y  G+RISE L L  Q++  ++  + I+   +    V PL    R+A+  
Sbjct: 26  ARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVER 85

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +          +    +F   RG  L+     R IR      G    T  H LRH+    
Sbjct: 86  WTQERANWKGADRTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYE 145

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-GGDW 309
           L   G D R IQ  LG+  +  T  YT  N+    G W
Sbjct: 146 LAERGADTRLIQDYLGNRNIRHTVRYTASNAARFAGLW 183


>gi|296165946|ref|ZP_06848412.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295898699|gb|EFG78239.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 647

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 128/328 (39%), Gaps = 74/328 (22%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           +S E      L F  + T     + ++R+L  + I  ++   RT+  G R  +R+ +G  
Sbjct: 235 KSVESLINDLLPFAEYLTAHHPDVISLRELDRSCIEGYLKWNRTR--GWRG-QRAAAGAG 291

Query: 97  SFLKYLKKRKITTESNILNMRNL------------------------KKSNSLPRALNEK 132
             +          +S +L++RNL                        K    LPRAL   
Sbjct: 292 RTVS-----AAVAQSAVLSLRNLLDDITAWGWAQAPPRRLVFAADVPKLDQPLPRALAPD 346

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD---DQSTLR 189
                VD  +++     +   AR    L +L G GLR  E L L   +I+D     + L+
Sbjct: 347 -----VDAAVMNAVAHLQDPFARIG--LTVLRGAGLRAGELLDLELGSIIDYGPAGTWLK 399

Query: 190 IQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR-GIRGKPLNPGVFQRYI 247
           +  GK    R+VPL  +   A+ E+  L       +  LP  R G+    L   +F R+ 
Sbjct: 400 VPLGKLATERMVPLSAATLAALDEWVAL----RGTHRPLPHPRTGV----LTDFLFTRHG 451

Query: 248 RQL------------------RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           R+L                   R  G  L  T H LRH++AT L + G  L+++ S+LGH
Sbjct: 452 RRLGYTRLRNGLLTAAESAGLHRPDGGVLMVTPHQLRHTWATELANAGMSLQALMSLLGH 511

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                T  Y  + S      +   YD+ 
Sbjct: 512 VTPQMTIRYATLASPT----LRAAYDEA 535


>gi|295085005|emb|CBK66528.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 403

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 18/159 (11%)

Query: 167 GLRISEALSLTPQNI---MDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           GL  ++  +L P++I    + +  +RI+  K D    +PL P +   ILE Y+    D  
Sbjct: 251 GLAYADTRALHPRHIGTTSEGRRYIRIRRAKTDVEAFIPLHP-IAGQILELYNTTDDDR- 308

Query: 223 LNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
                P+F      PL    V    +  +   LG+  + + H  RHSF T  L+ G  + 
Sbjct: 309 -----PVF------PLPVRDVLWYEVHGMGVALGMKENLSYHMARHSFGTLTLTAGIPIE 357

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           SI  ++GH  + +TQ+Y  V  +     M  + ++  P+
Sbjct: 358 SIARMMGHTNIDSTQVYAQVTDRKISSDMNRLMERRKPA 396


>gi|225419985|ref|ZP_03762288.1| hypothetical protein CLOSTASPAR_06326 [Clostridium asparagiforme
           DSM 15981]
 gi|225041377|gb|EEG51623.1| hypothetical protein CLOSTASPAR_06326 [Clostridium asparagiforme
           DSM 15981]
          Length = 335

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 84/189 (44%), Gaps = 22/189 (11%)

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           NL  S  +P     K+  T  +   L  +    W+D+    IL+ LY  G RISE LSL 
Sbjct: 152 NLLTSEPIPETT--KEVFTDKEVSRLWENQNLPWVDS----ILFFLY-TGFRISEMLSLR 204

Query: 178 PQNIMDDQSTLR--IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
             N+   + T+R  ++ +  K R++P+   ++  + + ++             LF    G
Sbjct: 205 TANVDLKEWTMRGGVKTEAGKNRLIPVHSKIQGIVQKRFEQSKTGY-------LFE-YEG 256

Query: 236 KPLNPGVFQRYIRQLRRYLG-LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
             ++   ++     L   +G L +  T H  RH+F + L S G +   I  ++GH    T
Sbjct: 257 NEVSESKYREIWADL---MGKLQMKHTPHECRHTFRSRLDSAGANKVCIDRLMGHKSKGT 313

Query: 295 TQ-IYTNVN 302
            + +YT+ N
Sbjct: 314 GERVYTHKN 322


>gi|223985058|ref|ZP_03635156.1| hypothetical protein HOLDEFILI_02460 [Holdemania filiformis DSM
           12042]
 gi|288870485|ref|ZP_06114257.2| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Clostridium hathewayi DSM 13479]
 gi|332655049|ref|ZP_08420790.1| putative prophage LambdaCh01, site-specific recombinase, phage
           integrase family [Ruminococcaceae bacterium D16]
 gi|223963030|gb|EEF67444.1| hypothetical protein HOLDEFILI_02460 [Holdemania filiformis DSM
           12042]
 gi|288866967|gb|EFC99265.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Clostridium hathewayi DSM 13479]
 gi|332515909|gb|EGJ45518.1| putative prophage LambdaCh01, site-specific recombinase, phage
           integrase family [Ruminococcaceae bacterium D16]
          Length = 465

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 3/75 (4%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS-NGGDLRSIQSIL 287
           +F    G+P+   V  R   +L +  GLP     H+LRHS  T+ L  NGGD++S+Q   
Sbjct: 324 VFCSSNGRPMESQVINRAFNKLIKENGLP-HVVFHSLRHSSITYKLKLNGGDMKSVQGDS 382

Query: 288 GHFRLS-TTQIYTNV 301
           GH ++     +Y+++
Sbjct: 383 GHAQVKMVADVYSHI 397


>gi|50914588|ref|YP_060560.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes MGAS10394]
 gi|50903662|gb|AAT87377.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes MGAS10394]
          Length = 248

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 67/162 (41%), Gaps = 24/162 (14%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKI-------RIVP-LLPSVRKAILEYYDL-- 216
           G RI EA+S+ P N       L++ G  D         +  P  L S R+ I+   +L  
Sbjct: 75  GCRIGEAVSIEPCNYESKSRILQLHGTFDHTEGYRNGEKTAPKTLASYRETIMTSRELEI 134

Query: 217 -------CPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST--TAH 263
                     + N N +      LF    G P+    F   +++    L  P++   T+H
Sbjct: 135 LQELEFMNELEKNTNHRYRDMGYLFTTKNGVPIQTNSFNLALKKANERLEDPITKKLTSH 194

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
             RH+  + L  N   L+SI   +GH    TT QIYT+V  K
Sbjct: 195 IFRHTLISRLAENNVPLKSIMERVGHADAKTTAQIYTHVTKK 236


>gi|29347339|ref|NP_810842.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253570442|ref|ZP_04847850.1| transposase [Bacteroides sp. 1_1_6]
 gi|29339239|gb|AAO77036.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251839391|gb|EES67474.1| transposase [Bacteroides sp. 1_1_6]
          Length = 403

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 18/159 (11%)

Query: 167 GLRISEALSLTPQNI---MDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           GL  ++  +L P++I    + +  +RI+  K D    +PL P +   ILE Y+    D  
Sbjct: 251 GLAYADTRALHPRHIGTTSEGRRYIRIRRAKTDVEAFIPLHP-IAGQILELYNTTDDDR- 308

Query: 223 LNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
                P+F      PL    V    +  +   LG+  + + H  RHSF T  L+ G  + 
Sbjct: 309 -----PVF------PLPVRDVLWYEVHGMGVALGMKENLSYHMARHSFGTLTLTAGIPIE 357

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           SI  ++GH  + +TQ+Y  V  +     M  + ++  P+
Sbjct: 358 SIARMMGHTNIDSTQVYAQVTDRKISSDMNRLMERRKPA 396


>gi|34763136|ref|ZP_00144105.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27887199|gb|EAA24301.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 290

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 119/291 (40%), Gaps = 20/291 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  LE E      T+ S   D   FL +L      K  I T+ +L    I+ ++++ 
Sbjct: 12  KDFVYYLEFEENKKNNTVISIRKDLNNFLEYLN-----KKNIITLDKLDELIIKEYLTEL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +   + + +  R LS IK F KYL    +  +   + +   K      + LN  +     
Sbjct: 67  KDFDLSNSTYNRRLSSIKKFYKYLINNNLKEKGKEILIEGKKSDEKKIQYLNSDEI---- 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKI 197
             +L     E  +   R+  +  LLY  G+ ++E LSL   N  ++ +    ++ +  K+
Sbjct: 123 -KILREEMKEESFNFLRDRLMFELLYSSGMTVAELLSLGELNFNLEKREIYLLKNRISKV 181

Query: 198 RIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
             +    + ++  L++     +    D N NI   +F       L     +R I +    
Sbjct: 182 --LYFSQTCKEVYLKFLIAKKEKFKEDNNTNI---IFVNNSNMRLTDRSVRRLINKYSEK 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             LP   + +TLRHSF  ++L NG     +  +L    +    IY ++  K
Sbjct: 237 ANLPKEVSPYTLRHSFCIYMLKNGMPKEYLAKLLDLKSIGLLDIYEDLCKK 287


>gi|282877848|ref|ZP_06286660.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281300059|gb|EFA92416.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 409

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYT 299
             +Q Y++ LR   G+    T HT RH+FAT + L  G  + ++  +LGH  +S T+ Y 
Sbjct: 325 ATYQSYLKALRLRAGISFPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYA 384

Query: 300 NVN 302
            V 
Sbjct: 385 KVT 387


>gi|153815865|ref|ZP_01968533.1| hypothetical protein RUMTOR_02110 [Ruminococcus torques ATCC 27756]
 gi|145846890|gb|EDK23808.1| hypothetical protein RUMTOR_02110 [Ruminococcus torques ATCC 27756]
          Length = 400

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 30/43 (69%), Gaps = 1/43 (2%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVN 302
           T HTLRH++AT    NG D + +Q +LGH  L+ TT +YT+V+
Sbjct: 343 TCHTLRHTYATRCYENGVDQQVVQKLLGHSTLAMTTDLYTHVS 385


>gi|53714293|ref|YP_100285.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|160890419|ref|ZP_02071422.1| hypothetical protein BACUNI_02861 [Bacteroides uniformis ATCC 8492]
 gi|167762413|ref|ZP_02434540.1| hypothetical protein BACSTE_00767 [Bacteroides stercoris ATCC
           43183]
 gi|237714129|ref|ZP_04544610.1| transposase [Bacteroides sp. D1]
 gi|253565736|ref|ZP_04843191.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|262407179|ref|ZP_06083728.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_22]
 gi|293372588|ref|ZP_06618970.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|294646951|ref|ZP_06724570.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294809674|ref|ZP_06768363.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|299148363|ref|ZP_07041425.1| integrase [Bacteroides sp. 3_1_23]
 gi|317479063|ref|ZP_07938205.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|52217158|dbj|BAD49751.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|156860151|gb|EDO53582.1| hypothetical protein BACUNI_02861 [Bacteroides uniformis ATCC 8492]
 gi|167699519|gb|EDS16098.1| hypothetical protein BACSTE_00767 [Bacteroides stercoris ATCC
           43183]
 gi|229445953|gb|EEO51744.1| transposase [Bacteroides sp. D1]
 gi|251946015|gb|EES86422.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|262355882|gb|EEZ04973.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_22]
 gi|291515085|emb|CBK64295.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
 gi|292632397|gb|EFF50993.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292637721|gb|EFF56120.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294443098|gb|EFG11876.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298513124|gb|EFI37011.1| integrase [Bacteroides sp. 3_1_23]
 gi|316904777|gb|EFV26589.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 403

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 18/159 (11%)

Query: 167 GLRISEALSLTPQNI---MDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           GL  ++  +L P++I    + +  +RI+  K D    +PL P +   ILE Y+    D  
Sbjct: 251 GLAYADTRALHPRHIGTTSEGRRYIRIRRAKTDVEAFIPLHP-IAGQILELYNTTDDDR- 308

Query: 223 LNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
                P+F      PL    V    +  +   LG+  + + H  RHSF T  L+ G  + 
Sbjct: 309 -----PVF------PLPVRDVLWYEVHGMGVALGMKENLSYHMARHSFGTLTLTAGIPIE 357

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           SI  ++GH  + +TQ+Y  V  +     M  + ++  P+
Sbjct: 358 SIARMMGHTNIDSTQVYAQVTDRKISSDMNRLMERRKPA 396


>gi|295086030|emb|CBK67553.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 368

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 19/147 (12%)

Query: 163 LYGC--GLRISEALSLTPQN--IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           L+ C  GLRIS+ L L  ++  +  DQ    I+   +K      LP  ++A+    +LC 
Sbjct: 225 LFACMTGLRISDILKLDWRDFEVGPDQGYY-IRICTEKTETEATLPISQEAL----ELCG 279

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
                 +   L R +   PL   + +  IR+           T H  RHS+A   +S G 
Sbjct: 280 EWGTGKVFKGLTRSMTHHPLKQWIAEAGIRK---------HITFHCFRHSYAVIQISLGT 330

Query: 279 DLRSIQSILGHFRLSTTQIYTN-VNSK 304
           D+ ++  +L H  ++TTQIY + VNSK
Sbjct: 331 DIYTVSKMLTHKNVTTTQIYADLVNSK 357


>gi|166366145|ref|YP_001658418.1| phage integrase family protein [Microcystis aeruginosa NIES-843]
 gi|166088518|dbj|BAG03226.1| phage integrase family [Microcystis aeruginosa NIES-843]
          Length = 186

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 72/158 (45%), Gaps = 6/158 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK-IRIVPLLPSVRKAILEY 213
           R+  +  + +    RISEAL LT  ++    +  +   KG K  R +P+ P++RK IL+ 
Sbjct: 28  RDRCLFGICFHTSCRISEALQLTVNDVGTAITFRKSTTKGKKGTRSIPVNPALRK-ILDL 86

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           Y L  F  +  +  P F   R K  L+       +R      GL    + H+ R S  T 
Sbjct: 87  Y-LQEFQPDSYL-FPSFHNAREKGHLHRSSADLILRNACERAGLK-GVSTHSFRRSALTM 143

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           + + G  LR IQ I GH  L   Q Y  V+ +  GD +
Sbjct: 144 MSNRGVPLRVIQKISGHSSLEVLQRYLEVSDEQIGDAV 181


>gi|163760613|ref|ZP_02167694.1| putative integrase protein [Hoeflea phototrophica DFL-43]
 gi|162282228|gb|EDQ32518.1| putative integrase protein [Hoeflea phototrophica DFL-43]
          Length = 236

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 67/156 (42%), Gaps = 18/156 (11%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           +A +  +   L   G RI EAL+L   +I ++ +T  I   G K R VPL      A+  
Sbjct: 20  NAHHELLCRFLVDTGARIGEALALKWNDIHNNVATFWITKSG-KSRSVPLTVRAAHAVEL 78

Query: 213 YYDLC---PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
             D     PF    +I    F+              + R+  R+   P     H LRH+ 
Sbjct: 79  ARDFAGSGPFS---DISYANFK----------YNWNHARKENRFTNDPY-MVPHILRHTC 124

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           A+ L+  G DLR +Q+ LGH  +  T  Y ++ + +
Sbjct: 125 ASRLVQAGIDLRRVQTYLGHQTIQMTLRYAHLATND 160


>gi|325002054|ref|ZP_08123166.1| integrase family protein [Pseudonocardia sp. P1]
          Length = 264

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 98/240 (40%), Gaps = 16/240 (6%)

Query: 53  YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
           +  E+   +T+ +L+ + IR ++           +++    G+  F  +L      +E  
Sbjct: 5   WLREQGRPETLDELTRSAIRGWLESLIEAGREPSTVRTRFKGLHRFCGWLVAEGDLSEHP 64

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVD---NVLLHTSHETKWIDARNSAILYLLYGCGLR 169
           +  M         P    +K    L D   + L+       +   R+ A++  L   G+R
Sbjct: 65  MTGME--------PPTAQQKPVPVLSDQELDKLVKVCRGRDFTSRRDEAMIRFLLDTGVR 116

Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILEYYDLCPFDLNLNIQLP 228
           +SE   L+  ++  D+ T  ++GKG+K+R V P   +VR   L+ Y              
Sbjct: 117 VSELCGLSVTDVDLDRETAIVRGKGNKVRAVYPSTKTVR--ALDQYLRARRAHRWTHLDA 174

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           L+   RG     G  +R +R      G+P     H  RH+FA   + +GG  R ++ + G
Sbjct: 175 LWLTQRGALSTDGARER-VRIRGEQAGIP-DLHPHRFRHTFAHDYMVSGGQERDLKRLAG 232


>gi|229892121|sp|Q1JGQ2|XERS_STRPD RecName: Full=Tyrosine recombinase xerS
          Length = 356

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 128/330 (38%), Gaps = 64/330 (19%)

Query: 12  FELLKERQ---NWLQNLEIER--GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           +E LKE +   +WL + ++ +   ++ + L + E  T++ L     Y  E+ ++ T    
Sbjct: 39  YEYLKEYKRFFDWLMDADLTKVPKIADIDLSTLEHLTKKDLEAFVLYLRERPSLNTYST- 97

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL- 125
                         + +   ++ R+LS + S  KYL +     +      RN+ K  S  
Sbjct: 98  -------------KEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTK 144

Query: 126 -------PRALNEKQALTLVDNVLLHTSHETKWID---------------ARNSAILYLL 163
                   RA N KQ L L D  L    +  K  +                R+ AI+ LL
Sbjct: 145 KKKETLASRAENIKQKLFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALL 204

Query: 164 YGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKAIL--------- 211
              G+R+SEA++L  +++   M     +R  GK D + +        ++ L         
Sbjct: 205 LASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDSVNVAGFAKGYLESYLAVRQRRYKA 264

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           E  DL  F       L  +RG+  + ++    ++ + +        +  T H LRH+ AT
Sbjct: 265 EKQDLAFF-------LTEYRGVPNR-MDASSIEKMVGKYSE--DFKIRVTPHKLRHTLAT 314

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            L         +   LGH     T +YT++
Sbjct: 315 RLYDATKSQVLVSHQLGHSSTQVTDLYTHI 344


>gi|228966946|ref|ZP_04127984.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228792680|gb|EEM40244.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 376

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 68/159 (42%), Gaps = 37/159 (23%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQ-------GKGD--------KIRIVPLLPSVRKAIL 211
           G+RI E L+L   +I  +  T+ +Q       GK +          R++P+   +  A+L
Sbjct: 198 GMRIGEVLALQWDDINFENKTIHVQRTLTLVDGKYELGETKTEASNRMIPMTEDLMGALL 257

Query: 212 EY--------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           EY        +DL     N  I  P     + K L   +   YIR              H
Sbjct: 258 EYQNHRKENSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYIR-------------FH 304

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
            +R +F T L+ +G + + +  +LGH  +STT  IYT+V
Sbjct: 305 DIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDV 343


>gi|160939517|ref|ZP_02086867.1| hypothetical protein CLOBOL_04410 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437727|gb|EDP15489.1| hypothetical protein CLOBOL_04410 [Clostridium bolteae ATCC
           BAA-613]
          Length = 462

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 3/75 (4%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS-NGGDLRSIQSIL 287
           +F    G+P+   V  R   +L +  GLP     H+LRHS  T+ L  NGGD++S+Q   
Sbjct: 324 VFCSSNGRPMESQVINRAFNKLIKENGLP-HVVFHSLRHSSITYKLKLNGGDMKSVQGDS 382

Query: 288 GHFRLS-TTQIYTNV 301
           GH ++     +Y+++
Sbjct: 383 GHAQVKMVADVYSHI 397


>gi|229006821|ref|ZP_04164454.1| Integrase/recombinase [Bacillus mycoides Rock1-4]
 gi|228754443|gb|EEM03855.1| Integrase/recombinase [Bacillus mycoides Rock1-4]
          Length = 322

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 82/175 (46%), Gaps = 12/175 (6%)

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDK 196
           N+LL     T++I+ R++  + L+Y  G+R+     L  +++  +   LRI G   K  +
Sbjct: 140 NLLLSMLDLTRFIELRDAVSVLLMYQTGIRVGTLSQLENKHVNLENKVLRIDGGILKNHE 199

Query: 197 IRIVP---LLPSVRKAILEYYDLCPFDLNL-NIQLPLFRG---IRGKPLNPGVFQRYIRQ 249
              +P   +L  V  A+++  D+   +  + N  L + +    I   P N  V +R  + 
Sbjct: 200 SIHLPFDDVLARVLYALMKQNDIIRKECRVKNDYLFITKNGGRIATSPTNNNVTKRLSKH 259

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            R Y G   +   H LR  FA +LL  G ++  I   LGH  L+ T  Y +++ +
Sbjct: 260 ARDY-GFK-NINPHALRRGFAKNLLKKGANIALISKALGHSDLAVTTRYLHLDKE 312


>gi|225010016|ref|ZP_03700488.1| integrase family protein [Flavobacteria bacterium MS024-3C]
 gi|225005495|gb|EEG43445.1| integrase family protein [Flavobacteria bacterium MS024-3C]
          Length = 345

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 16/142 (11%)

Query: 162 LLYGCGLRISEAL-SLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLC 217
           + YGC LR  + L  LT  +   D S +++ G   K  + RIVP+   VR+       L 
Sbjct: 198 MTYGCLLRPHKELRELTWGDFTADLSYIKLSGSRNKSGRNRIVPVPSYVREL------LN 251

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSN 276
             D NLNI    F G    P NP  F+    + ++   L     T ++ RHS A  +   
Sbjct: 252 KEDNNLNI----FTGTTNAP-NPDYFKTIWGRFKKVSKLLEQDQTLYSFRHSGAIEIYKR 306

Query: 277 GGDLRSIQSILGHFRLSTTQIY 298
            G L  +Q  LGH  L+ +  Y
Sbjct: 307 TGSLSKLQKALGHSSLAVSLTY 328


>gi|218905654|ref|YP_002453488.1| transposase B [Bacillus cereus AH820]
 gi|218537857|gb|ACK90255.1| transposase B [Bacillus cereus AH820]
          Length = 637

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 59/277 (21%), Positives = 112/277 (40%), Gaps = 37/277 (13%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           R+F  F+    E    I+ I QL+  E+  ++++   + +   +    +S ++ F   L+
Sbjct: 249 REFFNFINTNCE---GIRRIHQLTRNEVEQYLNEINLKGLKPSTATGRISTLEVFFSTLQ 305

Query: 104 KRKI-TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
           +     + S IL  R  +    +P+A    Q   + ++VL   + +   ++   +A++ +
Sbjct: 306 RFDWKDSPSQILIFR--EDYPKVPKA----QPRYIDEHVLEQLNVKLDKLEPYMAAMVMV 359

Query: 163 LYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPSVRKAIL------- 211
           L  CG+RI E  +L   +++ D+         Q K  K   +P+   +   IL       
Sbjct: 360 LQECGMRIGELCTLKKGSVITDKEGDCFLKYYQWKMKKEHTIPISKEIAALILVQEQRVA 419

Query: 212 -EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ------RYIRQLRRYLGLPLSTTAHT 264
            E  D C +         +F    G PL    F+       Y  ++    G      AH 
Sbjct: 420 DELDDGCVY---------VFPRKDGSPLKQDTFRVKLNKLAYEEKITDNKGEIFRFHAHA 470

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            RH+  T +++NG     +Q  LGH     T  Y ++
Sbjct: 471 FRHTVGTRMINNGVPQHIVQKFLGHESPEMTARYAHI 507


>gi|295100218|emb|CBK97763.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 463

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 3/75 (4%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS-NGGDLRSIQSIL 287
           +F    G+P+   V  R   +L +  GLP     H+LRHS  T+ L  NGGD++S+Q   
Sbjct: 322 VFCSSNGRPMESQVINRAFNKLIKENGLP-HVVFHSLRHSSITYKLKLNGGDMKSVQGDS 380

Query: 288 GHFRLS-TTQIYTNV 301
           GH ++     +Y+++
Sbjct: 381 GHAQVKMVADVYSHI 395


>gi|270269254|gb|ACZ66246.1| Tn554-related, transposase A [Staphylococcus aureus]
          Length = 370

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 90/212 (42%), Gaps = 26/212 (12%)

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
           KSF+ ++ K    T  NIL ++  KK   +      K+ L   +N+             R
Sbjct: 143 KSFMHHINK-DYRTLKNILKVKEPKKKIEVLTNAEVKKLLEKANNI-------------R 188

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDD-----QSTL--RIQGKGDKIRIVPLLPSVRK 208
           +  ++ LLY  GLRI E LSL   +I  D     Q  L  R    G  ++       + +
Sbjct: 189 DKFLIQLLYETGLRIGEVLSLRIDDIKFDFRKGHQIVLKNRFNDNGTYLKTGERKIFISQ 248

Query: 209 AILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT- 264
           ++++ YD   +++   + +    LF  I+G+ +   +    I  L + L    S   H  
Sbjct: 249 SLIDLYDDYVYEIIDELSICSDYLFVKIKGRNVGEAMNYSDIYSLFKRLKHKTSINVHPH 308

Query: 265 -LRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             RH+ AT   +   D++ +Q  LGH  + TT
Sbjct: 309 LFRHTHATVFYNETKDIKQVQERLGHSNIQTT 340


>gi|270265399|ref|ZP_06193659.1| DNA integration/recombination/invertion protein [Serratia odorifera
           4Rx13]
 gi|270040654|gb|EFA13758.1| DNA integration/recombination/invertion protein [Serratia odorifera
           4Rx13]
          Length = 264

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 43/176 (24%)

Query: 158 AILYLLYGCGLRISEALSL---------TPQNIMDDQSTLRIQGKG------DKIRIVPL 202
           A + LL+  G RI+EAL++         T  +++   +  R  G G         RIVPL
Sbjct: 65  AFVNLLWNTGARINEALAVCRRDFRLNVTMPHVIYRTAKQRRAGPGRPKKGKSAHRIVPL 124

Query: 203 --------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR------ 248
                   L  +  +  E +++ P +      LP+++          V  R +R      
Sbjct: 125 TDPLFVDELRRLFASTKEQFEINP-ETGERTPLPIWQ----------VTDRTVRNWLTKA 173

Query: 249 --QLRR-YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             Q RR  +   +  T H  RHS+A H++  G  L+ +Q +LGH +  +T++YT V
Sbjct: 174 ENQARRDGIRFSIPITPHVFRHSYAMHMIYQGTPLKVLQGLLGHEKPESTEVYTRV 229


>gi|256377555|ref|YP_003101215.1| integrase family protein [Actinosynnema mirum DSM 43827]
 gi|255921858|gb|ACU37369.1| integrase family protein [Actinosynnema mirum DSM 43827]
          Length = 405

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 20/184 (10%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKA 209
           +D   +  +  L+  GLR+SE   L   ++  ++    LR++GKG K RIV L      A
Sbjct: 215 VDTARAGAVVALFTLGLRVSEICGLDRADLHVNRGRRALRVEGKGGKTRIVYLHSLAETA 274

Query: 210 ILEYY--------DLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           ++ Y         +L   D        PL     G         + +R+L    G  L  
Sbjct: 275 LMGYLRTQESRSKELTRADRRATAHTTPLLTTRTGNRYQRQALWQLLRRLAESGGDALLD 334

Query: 261 TA-----HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN---SKNGGDWMM 311
            A     H LRH + T  +  G +L ++Q+ +GH  + TT Q+Y +     S++  D + 
Sbjct: 335 VADAMHPHALRHFYVTTAVEAGAELGNVQADVGHSSIDTTSQVYNHAARDPSRSAADLVG 394

Query: 312 EIYD 315
           +  D
Sbjct: 395 QALD 398


>gi|239624324|ref|ZP_04667355.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520710|gb|EEQ60576.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 463

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 3/75 (4%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS-NGGDLRSIQSIL 287
           +F    G+P+   V  R   +L +  GLP     H+LRHS  T+ L  NGGD++S+Q   
Sbjct: 322 VFCSSNGRPMESQVINRAFNKLIKENGLP-HVVFHSLRHSSITYKLKLNGGDMKSVQGDS 380

Query: 288 GHFRLS-TTQIYTNV 301
           GH ++     +Y+++
Sbjct: 381 GHAQVKMVADVYSHI 395


>gi|154496779|ref|ZP_02035475.1| hypothetical protein BACCAP_01072 [Bacteroides capillosus ATCC
           29799]
 gi|150274031|gb|EDN01131.1| hypothetical protein BACCAP_01072 [Bacteroides capillosus ATCC
           29799]
          Length = 349

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 70/158 (44%), Gaps = 5/158 (3%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIR 198
           LL +  ++ + + R+  I+ L+   G+R+ E L L+ + I   +  + I     KG K R
Sbjct: 169 LLDSLDKSYFSENRDRTIILLILDTGMRLGECLKLSMEYIDMHERVISIPAELTKGRKAR 228

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            V       KA+ ++       +  +   P      G PL    F+   R+     G+  
Sbjct: 229 CVYFSIKTAKALQQWLRFKDRYVESSYIFPTKES--GMPLELRSFESNFRRYVMRSGIQK 286

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
             + H LR++FA   +  G D+ ++  ILGH  ++ T+
Sbjct: 287 EISPHALRNNFAKRCILAGMDIYTLSRILGHSSVTVTE 324


>gi|303236762|ref|ZP_07323341.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302482930|gb|EFL45946.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 404

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYT 299
             +Q Y++ LR   G+    T HT RH+FAT + L  G  + ++  +LGH  +S T+ Y 
Sbjct: 320 ATYQSYLKALRLRAGISFPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYA 379

Query: 300 NVN 302
            V 
Sbjct: 380 KVT 382


>gi|300854165|ref|YP_003779149.1| putative integrase/recombinase [Clostridium ljungdahlii DSM 13528]
 gi|300434280|gb|ADK14047.1| putative integrase/recombinase [Clostridium ljungdahlii DSM 13528]
          Length = 252

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 1/57 (1%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213
           A++ +LYGCGLRISEALSL   ++  +   L I  GK +  R+VP+  S+++ ++ Y
Sbjct: 149 AVIRVLYGCGLRISEALSLKFTDVDLENGILVIMNGKNNVSRLVPMSKSLQQYLIAY 205


>gi|295401471|ref|ZP_06811441.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|294976521|gb|EFG52129.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
          Length = 189

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 63/152 (41%), Gaps = 7/152 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR----IQGKGDKIRIVPLLPSVRKAI 210
           R+  +  L    GLRIS+ LSL   ++ + +  +     ++ K  K RIV L    R+ I
Sbjct: 26  RDELLFTLGINTGLRISDILSLKVGDVRNAKGAVERFEIVEKKTKKTRIVALNKKTRRLI 85

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYLGLPLSTTAHTLRHSF 269
             Y  L     N     PLFR  +G          YI  +  + +G+      H+LR +F
Sbjct: 86  ERY--LATERPNARNDEPLFRSQKGGRAISRQHAHYILNRAAKMIGVMERVGTHSLRKTF 143

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                  G DL  IQ +L H   + T  Y  +
Sbjct: 144 GYFAYKQGTDLAIIQKLLNHSSQAETLRYIGI 175


>gi|320013192|gb|ADW08040.1| integrase family protein [Streptomyces flavogriseus ATCC 33331]
          Length = 363

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 90/241 (37%), Gaps = 22/241 (9%)

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN---LKKSNSLPRALNEKQA 134
           R  +   D S   +LS   SF  YL     T   N  +      +    S      E Q 
Sbjct: 120 RAGEPYSDASRANALSASSSFYSYLDIVSDTPLKNPFDAVRRPVIDPGYSPTPGYTEAQW 179

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQG 192
             LV  V     H       R  AIL LLY C LRI   LS   +++  DQ    ++++ 
Sbjct: 180 AALV--VTARDHHRVAAYRKRAYAILLLLYTCCLRIDSLLSAKVEHLGYDQGHHVIKVKV 237

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG   R  P+ P    A+ +Y D             +     G+   P V+Q  ++ L +
Sbjct: 238 KGGSWRNKPIPPIAWDALQDYLD------GRKTGWLICTASGGQLDEPAVWQ-LLQSLAK 290

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRS--IQSILGHFRLSTTQIYT----NVNSKNG 306
             GLP     H ++    TH L+   D R   IQ    H    TTQ Y     N++S   
Sbjct: 291 RAGLP-PRGPHGVKGDAVTHALAK-KDARPDKIQRWADHHDSRTTQRYNRRKDNLDSPGY 348

Query: 307 G 307
           G
Sbjct: 349 G 349


>gi|255016017|ref|ZP_05288143.1| integrase [Bacteroides sp. 2_1_7]
          Length = 310

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 10/139 (7%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G+   +   L  +N+ D   +   Q  G  IR+   +P+  + +L+   +C  D +    
Sbjct: 147 GMAFVDFAHLRKENVKDGVLSYHRQKSGSFIRVE--IPADVRLLLDELAVCT-DKDSPYL 203

Query: 227 LPLFRGIRG-----KPLNPGV--FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
            P   G +         N  +  F R +R L    G+    T++T+RHSFAT L      
Sbjct: 204 FPFLSGKKTGEAAYAEYNGALLRFNRDLRSLAETCGVGEPVTSYTIRHSFATTLKEQDVP 263

Query: 280 LRSIQSILGHFRLSTTQIY 298
           +  I  +LGH  + TTQIY
Sbjct: 264 IEMISELLGHTSIKTTQIY 282


>gi|163785712|ref|ZP_02180232.1| Tn554-related, transposase A [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879019|gb|EDP73003.1| Tn554-related, transposase A [Hydrogenivirga sp. 128-5-R1-1]
          Length = 340

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 102/244 (41%), Gaps = 41/244 (16%)

Query: 88  LKRSLSG----IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
           LK+ +SG     K FL +++K K    S +  +  +K+  + P+ L ++Q  TL++    
Sbjct: 112 LKKEMSGSRRGYKGFLYHIQKEK----SFLAKILKIKEPKTRPKVLTKEQVKTLINAC-- 165

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-------- 195
                    + R+  ++ LL+  G+RI EALSL  ++   D+  L I+ +G+        
Sbjct: 166 --------NNLRDKFLISLLWETGIRIGEALSLWIEDFSIDKRILTIKDRGELENKAEIK 217

Query: 196 ---KIRIVPLLPSVRKAILEY---YDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIR 248
                R + +   +    ++Y   Y     D N      +F  + GK    P  +Q    
Sbjct: 218 TVNSPRTIHISEKLTNMFIQYVADYHTNEVDTNF-----VFIKLSGKNKYQPMEYQDVDS 272

Query: 249 QLRR-YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKN- 305
             +R Y    +  T H LRH+  T L   G     +Q   GH  +  T Q Y +   ++ 
Sbjct: 273 LFKRLYKKTGIKATPHMLRHTSLTELRKAGLKPEHLQKRAGHKDVQFTIQTYYHPTDEDI 332

Query: 306 GGDW 309
             DW
Sbjct: 333 RKDW 336


>gi|319745023|gb|EFV97351.1| phage integrase family site-specific recombinase [Streptococcus
           agalactiae ATCC 13813]
          Length = 356

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 61/287 (21%), Positives = 115/287 (40%), Gaps = 49/287 (17%)

Query: 57  KITIQTIRQLSYTEIRAFI----------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK 106
           +I +  +  L+  ++ AFI          +  R   +   ++ R+L+ + S  KYL +  
Sbjct: 65  EIELSVLENLTKKDMEAFILYLRERPLLNANTRQNGVSQTTINRTLAALSSLFKYLTEEV 124

Query: 107 ITTESNILNMRNLKKSNSL--------PRALNEKQALTLVDNVLLHTSHETKWIDA---- 154
              +      RN+ K  S          RA N KQ L L +     T    ++ID     
Sbjct: 125 ENADGEPYFYRNVMKKVSTKKKKETLASRAENIKQKLFLGN----ETIEFLEYIDCEYQN 180

Query: 155 ---------------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                          R+ AI+ LL   G+R+SEA++L  ++I  +   + +  KG K   
Sbjct: 181 KLSKRALAFFNKNKERDLAIIALLLASGVRLSEAVNLDLKDINLNVMVIDVTRKGGKRDS 240

Query: 200 VPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           V +    +  +  Y D+        + ++ + L  +RG+  + ++    ++ + +  +  
Sbjct: 241 VNVASFAKPYLANYLDIRKNRYKAENQDIALFLSEYRGVPNR-IDASSVEKMVAKYSQ-- 297

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              +  T H LRH+ AT L         +   LGH     T +YT++
Sbjct: 298 DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHI 344


>gi|315172558|gb|EFU16575.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1346]
          Length = 183

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 11/152 (7%)

Query: 153 DARNSAILYLL-YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           +A     L+L+    GLR+S+ + L  ++++  ++   ++ K  K RI+  L S+++ I 
Sbjct: 26  NAERDVFLFLIGINSGLRMSDIVKLKKKDVISSKNPRIVEQKTGKTRIL-YLSSLQELIQ 84

Query: 212 EYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           +Y  DL P D        LF   +G  +      +  +++ + LG       HTLR +F 
Sbjct: 85  DYTKDLEPEDY-------LFPSTKGGHVEVNTVYQMFQKVAKLLGRD-DIGTHTLRKTFG 136

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            H      D+ ++  I GH     T+ Y  +N
Sbjct: 137 YHYYKKTKDVATLMEIFGHSSEKITKRYIGIN 168


>gi|295443920|dbj|BAJ06390.1| transposase B from transposon Tn554 [Staphylococcus aureus]
          Length = 609

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 115/282 (40%), Gaps = 32/282 (11%)

Query: 38  SYECDTRQFLI-FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS--- 93
           SY  D  Q L  F  F   +   +Q + QL+  EI A++S+     I   ++   +S   
Sbjct: 215 SYVSDIAQRLKEFFNFLDMKFKQVQRVHQLTRVEIEAYLSELNMMGIKPSTITGRISILE 274

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
           G+ S L  L+   + ++  I +    K   + PR ++E     +++ +  H     ++I 
Sbjct: 275 GLFSTLLRLEWDDVPSKILIYSEDYPKIPRAKPRFIDE----FVLEQLNSHLDKLPEYI- 329

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPSVRKA 209
              + +  ++  CG+RISE  +L    +++D+         Q K  K  IVP+   V   
Sbjct: 330 ---ATMTMIVQECGMRISELCTLKKGCLLEDKDGDFFLKYYQWKMKKEHIVPISKEVALL 386

Query: 210 ILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQ------RYIRQLRRYLGLPLS 259
           I    D       ++ + P    LF    G PL    F+       Y + +    G    
Sbjct: 387 IKVRED------KVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKSGEIYR 440

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             AH  RH+  T +++NG     +Q  LGH     T  Y ++
Sbjct: 441 FHAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHI 482


>gi|295110676|emb|CBL24629.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 400

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 30/43 (69%), Gaps = 1/43 (2%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVN 302
           T HTLRH++AT    NG D + +Q +LGH  L+ TT +YT+V+
Sbjct: 343 TCHTLRHTYATRCYENGVDQQVVQKLLGHSTLAMTTDLYTHVS 385


>gi|260593265|ref|ZP_05858723.1| integrase [Prevotella veroralis F0319]
 gi|260534822|gb|EEX17439.1| integrase [Prevotella veroralis F0319]
          Length = 409

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYT 299
             +Q Y++ LR   G+    T HT RH+FAT + L  G  + ++  +LGH  +S T+ Y 
Sbjct: 325 ATYQSYLKALRLRAGISFPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYA 384

Query: 300 NVN 302
            V 
Sbjct: 385 KVT 387


>gi|206889998|ref|YP_002248163.1| site specific recombinase [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206741936|gb|ACI20993.1| site specific recombinase [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 345

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 30/40 (75%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           H LRH+FA+HL+ NG DL+++Q +LGH  +  T  Y++++
Sbjct: 279 HDLRHTFASHLIMNGVDLKTVQELLGHKTIKMTLKYSHLS 318


>gi|153821974|ref|ZP_01974641.1| integrase [Vibrio cholerae B33]
 gi|229508872|ref|ZP_04398363.1| integrase [Vibrio cholerae B33]
 gi|126520513|gb|EAZ77736.1| integrase [Vibrio cholerae B33]
 gi|229354147|gb|EEO19079.1| integrase [Vibrio cholerae B33]
          Length = 385

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+    T H  RHSFA + L+ G D+ S+  +LGH  L TT+IY ++  +   D M    
Sbjct: 319 GITKHVTFHAGRHSFAVNQLARGLDIYSLSRLLGHSELKTTEIYADILDQRRRDAMRSFP 378

Query: 315 D 315
           D
Sbjct: 379 D 379


>gi|72383982|ref|YP_293336.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ralstonia
           eutropha JMP134]
 gi|72123325|gb|AAZ65479.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ralstonia
           eutropha JMP134]
          Length = 616

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 31/57 (54%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +  HTLRH+FATH ++N      +Q +LGH  L TT +Y       G   + ++Y +
Sbjct: 558 SAPHTLRHTFATHAVANEMPTDVLQRLLGHASLQTTSLYVRAERARGLAAVAKMYSE 614


>gi|15923045|ref|NP_370579.1| transposase B [Staphylococcus aureus subsp. aureus Mu50]
 gi|15924648|ref|NP_372182.1| transposase B [Staphylococcus aureus subsp. aureus Mu50]
 gi|15925758|ref|NP_373291.1| transposase B for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|15926489|ref|NP_374022.1| transposase B for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|15927237|ref|NP_374770.1| transposase B for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|15927726|ref|NP_375259.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus N315]
 gi|15928180|ref|NP_375713.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus N315]
 gi|49482301|ref|YP_039525.1| transposase B 1 [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49483902|ref|YP_041126.1| transposase B 2 [Staphylococcus aureus subsp. aureus MRSA252]
 gi|57865839|ref|YP_190049.1| transposase B [Staphylococcus epidermidis RP62A]
 gi|57867120|ref|YP_188797.1| Tn554, transposase B [Staphylococcus epidermidis RP62A]
 gi|57867259|ref|YP_188918.1| Tn554, transposase B [Staphylococcus epidermidis RP62A]
 gi|148266487|ref|YP_001245430.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|148268139|ref|YP_001247082.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150392520|ref|YP_001315195.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150394206|ref|YP_001316881.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156978385|ref|YP_001440644.1| transposase B [Staphylococcus aureus subsp. aureus Mu3]
 gi|156979976|ref|YP_001442235.1| transposase B [Staphylococcus aureus subsp. aureus Mu3]
 gi|254663983|ref|ZP_05143455.1| transposase B [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|255006444|ref|ZP_05145045.2| transposase B [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257428441|ref|ZP_05604839.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257431610|ref|ZP_05607978.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257793728|ref|ZP_05642707.1| transposase [Staphylococcus aureus A9781]
 gi|258411263|ref|ZP_05681540.1| transposase [Staphylococcus aureus A9763]
 gi|258422475|ref|ZP_05685386.1| transposase B 2 [Staphylococcus aureus A9719]
 gi|258448321|ref|ZP_05696446.1| transposase B transposon Tn554 [Staphylococcus aureus A6224]
 gi|258451923|ref|ZP_05699940.1| transposition regulatory protein tnpB [Staphylococcus aureus A5948]
 gi|258454552|ref|ZP_05702518.1| transposase B transposon Tn554 [Staphylococcus aureus A5937]
 gi|282929819|ref|ZP_06336962.1| transposase B from transposon Tn554 [Staphylococcus aureus A10102]
 gi|293503534|ref|ZP_06667381.1| transposase B from transposon Tn554 [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|295407731|ref|ZP_06817516.1| transposase B transposon Tn554 [Staphylococcus aureus A8819]
 gi|295429347|ref|ZP_06821968.1| transposase B transposon Tn554 [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297246796|ref|ZP_06930605.1| transposase B transposon Tn554 [Staphylococcus aureus A8796]
 gi|60415973|sp|P0A053|TNPB_STAAM RecName: Full=Transposase B from transposon Tn554
 gi|60415974|sp|P0A054|TNPB_STAAN RecName: Full=Transposase B from transposon Tn554
 gi|60415975|sp|P0A055|TNPB_STAAU RecName: Full=Transposase B from transposon Tn554
 gi|43728|emb|CAA26961.1| pot. tnpB protein [Staphylococcus aureus]
 gi|5360832|dbj|BAA82202.1| transposaseB [Staphylococcus aureus]
 gi|13699970|dbj|BAB41269.1| transposase B for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|13700703|dbj|BAB42000.1| transposase B for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|13701455|dbj|BAB42749.1| transposase B for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|13701946|dbj|BAB43238.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus N315]
 gi|13702551|dbj|BAB43692.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus N315]
 gi|14021042|dbj|BAB47666.1| transposase B(Tn554) [Staphylococcus aureus]
 gi|14245822|dbj|BAB56217.1| transposase B [Staphylococcus aureus subsp. aureus Mu50]
 gi|14247430|dbj|BAB57820.1| transposase B [Staphylococcus aureus subsp. aureus Mu50]
 gi|27529891|dbj|BAC53828.1| transposase B(Tn554) [Staphylococcus aureus]
 gi|49240430|emb|CAG39081.1| transposase B 1 [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49242031|emb|CAG40730.1| transposase B 2 [Staphylococcus aureus subsp. aureus MRSA252]
 gi|57636497|gb|AAW53285.1| transposase B [Staphylococcus epidermidis RP62A]
 gi|57637778|gb|AAW54566.1| Tn554, transposase B [Staphylococcus epidermidis RP62A]
 gi|57637917|gb|AAW54705.1| Tn554, transposase B [Staphylococcus epidermidis RP62A]
 gi|62815913|emb|CAH17566.1| Tranpsosase B [Staphylococcus aureus]
 gi|147739556|gb|ABQ47854.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|147741208|gb|ABQ49506.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149944972|gb|ABR50908.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|149946658|gb|ABR52594.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156720520|dbj|BAF76937.1| transposase B [Staphylococcus aureus subsp. aureus Mu3]
 gi|156722111|dbj|BAF78528.1| transposase B [Staphylococcus aureus subsp. aureus Mu3]
 gi|221327664|gb|ACM17508.1| transposase B [Staphylococcus aureus]
 gi|238773852|dbj|BAH66415.1| transposaseB [Staphylococcus aureus]
 gi|257275282|gb|EEV06769.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257277664|gb|EEV08348.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257787700|gb|EEV26040.1| transposase [Staphylococcus aureus A9781]
 gi|257839992|gb|EEV64459.1| transposase [Staphylococcus aureus A9763]
 gi|257841541|gb|EEV65979.1| transposase B 2 [Staphylococcus aureus A9719]
 gi|257858416|gb|EEV81294.1| transposase B transposon Tn554 [Staphylococcus aureus A6224]
 gi|257860406|gb|EEV83237.1| transposition regulatory protein tnpB [Staphylococcus aureus A5948]
 gi|257863279|gb|EEV86041.1| transposase B transposon Tn554 [Staphylococcus aureus A5937]
 gi|282167044|gb|ADA81060.1| Transposase B from transposon Tn554 [Staphylococcus aureus]
 gi|282589026|gb|EFB94131.1| transposase B from transposon Tn554 [Staphylococcus aureus A10102]
 gi|285815780|gb|ADC36267.1| Transposase B from transposon Tn554 [Staphylococcus aureus
           04-02981]
 gi|285817341|gb|ADC37828.1| Transposase B from transposon Tn554 [Staphylococcus aureus
           04-02981]
 gi|291095200|gb|EFE25465.1| transposase B from transposon Tn554 [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|294967407|gb|EFG43451.1| transposase B transposon Tn554 [Staphylococcus aureus A8819]
 gi|295126725|gb|EFG56370.1| transposase B transposon Tn554 [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297176347|gb|EFH35622.1| transposase B transposon Tn554 [Staphylococcus aureus A8796]
 gi|302750707|gb|ADL64884.1| transposition regulatory protein TnpB [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|302751485|gb|ADL65662.1| transposition regulatory protein TnpB_2 [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|312828684|emb|CBX33526.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315128351|gb|EFT84363.1| transposase B [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195562|gb|EFU25949.1| transposase B [Staphylococcus aureus subsp. aureus CGS00]
 gi|329727157|gb|EGG63613.1| site-specific recombinase, phage integrase family [Staphylococcus
           aureus subsp. aureus 21172]
 gi|224808|prf||1202257D gene tnpB
          Length = 630

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 115/282 (40%), Gaps = 32/282 (11%)

Query: 38  SYECDTRQFLI-FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS--- 93
           SY  D  Q L  F  F   +   +Q + QL+  EI A++S+     I   ++   +S   
Sbjct: 236 SYVSDIAQRLKEFFNFLDMKFKQVQRVHQLTRVEIEAYLSELNMMGIKPSTITGRISILE 295

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
           G+ S L  L+   + ++  I +    K   + PR ++E     +++ +  H     ++I 
Sbjct: 296 GLFSTLLRLEWDDVPSKILIYSEDYPKIPRAKPRFIDE----FVLEQLNSHLDKLPEYI- 350

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPSVRKA 209
              + +  ++  CG+RISE  +L    +++D+         Q K  K  IVP+   V   
Sbjct: 351 ---ATMTMIVQECGMRISELCTLKKGCLLEDKDGDFFLKYYQWKMKKEHIVPISKEVALL 407

Query: 210 ILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQ------RYIRQLRRYLGLPLS 259
           I    D       ++ + P    LF    G PL    F+       Y + +    G    
Sbjct: 408 IKVRED------KVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKSGEIYR 461

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             AH  RH+  T +++NG     +Q  LGH     T  Y ++
Sbjct: 462 FHAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHI 503


>gi|319400740|gb|EFV88962.1| transposition regulatory protein tnpA [Staphylococcus epidermidis
           FRI909]
          Length = 370

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 90/212 (42%), Gaps = 26/212 (12%)

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
           KSF+ ++ K    T  NIL ++  KK   +      K+ L   +N+             R
Sbjct: 143 KSFMHHINK-DYRTLKNILKVKEPKKKIEVLTNAEVKKLLEEANNI-------------R 188

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDD-----QSTL--RIQGKGDKIRIVPLLPSVRK 208
           +  ++ LLY  GLRI E LSL   +I  D     Q  L  R    G  ++       + +
Sbjct: 189 DKFLIQLLYETGLRIGEVLSLRIDDIKFDFRKGHQIVLKNRFNDNGTYLKTGERKIFISQ 248

Query: 209 AILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT- 264
           ++++ YD   +++   + +    LF  I+G+ +   +    I  L + L    S   H  
Sbjct: 249 SLIDLYDDYVYEIIDELSICSDYLFVKIKGRNVGEAMNYSDIYSLFKRLKHKTSINVHPH 308

Query: 265 -LRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             RH+ AT   +   D++ +Q  LGH  + TT
Sbjct: 309 LFRHTHATVFYNETKDIKQVQERLGHSNIQTT 340


>gi|317473900|ref|ZP_07933180.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316909977|gb|EFV31651.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 399

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 26/163 (15%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI-----VPLLPSVRKAILEYY 214
            L+GC  GL   +  +LTP++   D +  RI  K  +++      +PLLP + K IL+ Y
Sbjct: 246 FLFGCFTGLSYIDIKTLTPEHFEKDNAG-RIWIKKRRVKTGVLSRIPLLP-IAKLILDKY 303

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                            G +  P+ +P    +Y++ +    G+      HT RH+FA+ +
Sbjct: 304 K---------------GGEKLLPIQDPADINKYLKDIAILCGINKRICFHTSRHTFASTV 348

Query: 274 -LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            L+N   L  +  +LGH     T  Y  +  K  G+ M ++ D
Sbjct: 349 TLANNISLEVVSKMLGHTNTRMTAHYAKLIDKCIGEQMDKLMD 391


>gi|317505704|ref|ZP_07963596.1| integrase [Prevotella salivae DSM 15606]
 gi|315663181|gb|EFV02956.1| integrase [Prevotella salivae DSM 15606]
          Length = 346

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 6/146 (4%)

Query: 162 LLYGC--GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVRKAILEYYD 215
            ++ C  GL I++   LT  +I    D Q  +R + +  K+  IVPL P  +  I +   
Sbjct: 185 FIFSCFTGLAIADMEHLTSGHIKSAADGQMYIRKERQKTKVESIVPLHPIAKTIIAQQRQ 244

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
           L       N      R I     +  V    +  + +  G+    + H  RH+F T  LS
Sbjct: 245 LQAVKEEGNNTDMDNRLIFQPCCSRSVLAAKLSIVGKACGIKQRLSYHMGRHTFGTMCLS 304

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNV 301
            G  + SI  ++GH  +++TQIY  V
Sbjct: 305 AGIPIESIAKMMGHASIASTQIYAQV 330


>gi|309792261|ref|ZP_07686733.1| integrase domain-containing protein [Oscillochloris trichoides DG6]
 gi|308225802|gb|EFO79558.1| integrase domain-containing protein [Oscillochloris trichoides DG6]
          Length = 301

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 67/304 (22%), Positives = 121/304 (39%), Gaps = 39/304 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L +++ E+GLS  T+ SY CD R         T   +  + +  ++  +I++F+  R
Sbjct: 2   ETFLNDIQAEQGLSGNTITSYRCDLR---------TAAGVVDKPLETITTLDIQSFLDSR 52

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     +  R ++ +  F ++   R     + +  +     +   P+ +  +     +
Sbjct: 53  NEQP---GTTNRRIASLGRFFRWAVARGYCLYNPLEQIAGRYHTEHRPQPIVSEAERRAL 109

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQG-KGD 195
           D  +   S   +        I  LL   G+R  E L+L   +++    +  L +Q  K  
Sbjct: 110 DTAIAACSQPYRL-------IFTLLREIGVRTDEVLNLNVGDVILETGREVLLVQDTKSG 162

Query: 196 KIRIVPLLP-----SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
             R+V L P     S+R       DL P   N     PLF   RGK  +     R   Q+
Sbjct: 163 NKRMVALTPDAMPRSLRGLRSWMRDLGP---NPAPDAPLFCSSRGKRASYDTLHRRWVQV 219

Query: 251 RRYLGL--------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            R   L            T H LRH+ A  L++   + + ++ ILGH    +T+ Y ++ 
Sbjct: 220 CRAAHLIDLVEGKEQPRYTLHHLRHTAAAELIAFYPE-QVVRRILGHRDPRSTRRYADIV 278

Query: 303 SKNG 306
            K  
Sbjct: 279 RKGA 282


>gi|84517223|ref|ZP_01004578.1| Phage integrase [Loktanella vestfoldensis SKA53]
 gi|84508898|gb|EAQ05360.1| Phage integrase [Loktanella vestfoldensis SKA53]
          Length = 401

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           RR  GLP     H LRH+FA+ L++NG  +  +Q +LGH ++ TTQ Y ++
Sbjct: 318 RRRAGLP-DVRMHDLRHTFASLLINNGRSIYEVQKLLGHTQIKTTQRYAHL 367


>gi|56550653|ref|YP_161719.1| integrase/recombinase xerD [Cupriavidus metallidurans CH34]
 gi|94152600|ref|YP_582002.1| phage integrase [Cupriavidus metallidurans CH34]
 gi|56410359|emb|CAI30241.1| hypothetical Integrase/recombinase xerD [Cupriavidus metallidurans
           CH34]
 gi|93358966|gb|ABF13052.1| tyrosine-based site-specific recombinase BimA [Cupriavidus
           metallidurans CH34]
          Length = 495

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 68/310 (21%), Positives = 127/310 (40%), Gaps = 47/310 (15%)

Query: 30  GLSKLTLQSYECDTRQFLIFLA---FYTEEKITIQTIRQLSYT-EIRAFISKRRTQKIGD 85
           G S  TL++Y  + R+ + +     F     +T Q +    +T E  +  +   T  + +
Sbjct: 179 GRSSHTLRAYGAELRRLMRWCGTHGFGPFSDLTRQQLLAYRHTLEHGSSGTANTTPPLSE 238

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            +  R+L+ + S   Y         +  L+       ++  RA +      L+ + LL  
Sbjct: 239 ATRTRALAVVASLYGYWYA------TGYLHANPAAGLSAGSRARSGFVPTRLIPSALLDA 292

Query: 146 SHETKWIDA----------RNSAILYLLYGCGLRISEALSLTPQNIMD-------DQSTL 188
                W+DA          R  AI  L    G+R++E L+ + +  +         + TL
Sbjct: 293 C--DAWLDANSAGDLLPALRQRAIWALYRYAGVRLAE-LAWSAETALPRLEAEAPGRWTL 349

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLC---PFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            + GKG K+R +P LP+    +L  Y      P + + +  LP+  G +G+ L      R
Sbjct: 350 YVCGKGRKVRAIP-LPAQCMVVLRAYRRARGLPPEPSAHETLPVIHGSKGEALQQTGLYR 408

Query: 246 YIRQLRRYLGLPL------------STTAHTLRHSFA-THLLSNGGDLRSIQSILGHFRL 292
            I+ +   +   L            + + H LRH++A T ++ +   L + Q++LGH  +
Sbjct: 409 EIKAIFAVVADGLQAREPAKAMLLRAASPHWLRHAYARTLVVDHQVPLPAAQALLGHASV 468

Query: 293 STTQIYTNVN 302
            TT  Y   +
Sbjct: 469 QTTAAYAKTD 478


>gi|304437725|ref|ZP_07397676.1| integrase domain protein SAM domain protein [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304369274|gb|EFM22948.1| integrase domain protein SAM domain protein [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 352

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 113/275 (41%), Gaps = 21/275 (7%)

Query: 42  DTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY 101
           DT +  I L  +   +  +  +  +   +IR ++ + RT+     +L    + I++F K 
Sbjct: 58  DTYELAIRLFLHWCMEQGLHPLNDMHDYQIRVYMEEMRTRGYSAATLMIKGAAIRAFYKV 117

Query: 102 LKKRKITTESNI--LNMRNLKKSNSLPRALNEKQALTLVDNV------LLHTSHETKWID 153
            ++     E+    L +RN       P+ L+E      VD +      L    +E + + 
Sbjct: 118 AQRLSFIAENPCADLQLRN-------PQHLDEDYKYLTVDQIKEICEGLAADKNELRRL- 169

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS--VRKAIL 211
            RN  I+YL+   GLR+ E + L+ ++I   +  + I+GKG    I P   +  + +A +
Sbjct: 170 -RNLLIVYLMGVEGLRVVEVMRLSDEDIDWQRGRIEIRGKGHAGIIYPCEETFGILRAYI 228

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY-IRQLRRYLGLPLSTTA-HTLRHSF 269
           E     P +  L   +        K     V  RY I +     GL     A H  RHS 
Sbjct: 229 ETRGAVPPESRLTPTIISCANNNPKGRISRVGIRYVINKALTEAGLKQPGYACHLFRHSC 288

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            T+L     DLR +Q  L       T  Y +V+ +
Sbjct: 289 GTNLYQETKDLRVVQETLRQRSPKVTAKYAHVHDR 323


>gi|302038834|ref|YP_003799156.1| putative phage integrase [Candidatus Nitrospira defluvii]
 gi|300606898|emb|CBK43231.1| putative Phage integrase [Candidatus Nitrospira defluvii]
          Length = 361

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 7/143 (4%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC 217
           I+      G+R  E L+L  Q++   + TL + Q K    R +PL   V + +       
Sbjct: 185 IIVFALNTGMRQGEILNLQWQDVDFSRGTLIVMQSKNGTRRTIPLNTKVYELLASKQAAT 244

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
                     P+F+   G  L      R   + R   G+P     H +RH+FAT L+  G
Sbjct: 245 GLSRG-----PVFKTPLGNLLQVRFLVREFCEARNRAGIP-DFRFHDMRHTFATRLVQRG 298

Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300
            DL  +Q +LGH     TQ Y +
Sbjct: 299 VDLYKVQRLLGHKTNLMTQRYAH 321


>gi|296877295|ref|ZP_06901335.1| phage integrase family integrase/recombinase [Streptococcus
           parasanguinis ATCC 15912]
 gi|296431815|gb|EFH17622.1| phage integrase family integrase/recombinase [Streptococcus
           parasanguinis ATCC 15912]
          Length = 405

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 70/173 (40%), Gaps = 21/173 (12%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           I  ++  + YL +  G R SE  +L  ++I   +S +++    D+   V      +K I 
Sbjct: 217 ISLKDYVLFYLTFFLGDRKSETYALQWKHIDFSKSQIQLIQALDRYGQVKSTKGNKKTIF 276

Query: 212 ----------------EYYDLCPFDLNLNIQLPLF-----RGIRGKPLNPGVFQRYIRQL 250
                           + Y+L  F +  N +  +F     RG   KPL+       ++ +
Sbjct: 277 SISSDLLQLLTLWKKEQKYELAKFGIITNPEQFIFTYIDTRGNINKPLHSDYLNNKMKTI 336

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           R+        T H LRH+ AT     G  L +I   L H    TTQIY N ++
Sbjct: 337 RKRHPELTHATPHKLRHTGATLAKQAGMSLEAISEALTHSDTGTTQIYVNTSN 389


>gi|288800626|ref|ZP_06406084.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332839|gb|EFC71319.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 431

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 24/155 (15%)

Query: 162 LLYGC--GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVR-------- 207
            ++ C  GL I++   LT  +I    D Q  +R + +  K+  IVPL P  +        
Sbjct: 242 FIFSCFTGLAITDMEHLTFGHIKSAADGQMYIRKERQKTKVEFIVPLHPIAKTIIEQQRQ 301

Query: 208 -KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            KA+ E  +    D  L  Q    R +    L+          + +  G+    + H  R
Sbjct: 302 LKAVKEEGNNMDMDNRLIFQPCCSRNVLAAKLSI---------VGKACGIKQRLSYHMGR 352

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H+F T  LS G  + SI  ++GH  +++TQIY  V
Sbjct: 353 HTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQV 387


>gi|70568189|dbj|BAE06286.1| transposase B for Tn554 [Staphylococcus aureus]
          Length = 630

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 115/282 (40%), Gaps = 32/282 (11%)

Query: 38  SYECDTRQFLI-FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS--- 93
           SY  D  Q L  F  F   +   +Q + QL+  EI A++S+     I   ++   +S   
Sbjct: 236 SYVSDIAQRLKEFFNFLDMKFKQVQRVHQLTRVEIEAYLSELNMMGIKPSTITGRISILE 295

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
           G+ S L  L+   + ++  I +    K   + PR ++E     +++ +  H     ++I 
Sbjct: 296 GLFSTLLRLEWDDVPSKILIYSEDYPKIPRAKPRFIDE----FVLEQLNSHLDKLPEYI- 350

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPSVRKA 209
              + +  ++  CG+RISE  +L    +++D+         Q K  K  IVP+   V   
Sbjct: 351 ---ATMTMIVQECGMRISELCTLKKGCLLEDKDGDFFLKYYQWKMKKEHIVPISKEVALL 407

Query: 210 ILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQ------RYIRQLRRYLGLPLS 259
           I    D       ++ + P    LF    G PL    F+       Y + +    G    
Sbjct: 408 IKVRED------KVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKSGEIYR 461

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             AH  RH+  T +++NG     +Q  LGH     T  Y ++
Sbjct: 462 FHAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHI 503


>gi|332299070|ref|YP_004440992.1| integrase family protein [Treponema brennaborense DSM 12168]
 gi|332182173|gb|AEE17861.1| integrase family protein [Treponema brennaborense DSM 12168]
          Length = 445

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 50/243 (20%), Positives = 101/243 (41%), Gaps = 28/243 (11%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES---NILNMR 117
           + + +++  ++ AF S    QK+  +++   +  I   LK+    ++T  +    I+   
Sbjct: 162 KCVAEITRKDVDAFFSSDEAQKLAPKTVNSIIETITIPLKWAYYNELTQNNCFDGIIKCS 221

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           N+ K   +   L+ + A  L+         E  W +        L    G+R  E  +LT
Sbjct: 222 NISKKRKI---LDMETATKLM---------ELDWDNDEAKIANELAMHTGMRAGEIQALT 269

Query: 178 PQNIMDDQSTLRIQ---------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
             ++ +D+  +R            K  + R VP+ P   +  L+   L  F+ + N    
Sbjct: 270 VDDLGEDEIYVRRSWSKYDGLKCCKNGEERSVPI-PISHQLYLKLKMLAEFNPHDN-GFI 327

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
            +  +  KP++   F +Y+++  + +G   P     H+ RH F + +L    D R I ++
Sbjct: 328 FYSTVPDKPMDSKQFNKYLKRALKDIGFENPEDICFHSWRHFFCSRMLDYVQDKRYIMAL 387

Query: 287 LGH 289
            GH
Sbjct: 388 SGH 390


>gi|315038462|ref|YP_004032030.1| site-specific tyrosine recombinase XerS [Lactobacillus amylovorus
           GRL 1112]
 gi|312276595|gb|ADQ59235.1| site-specific tyrosine recombinase XerS [Lactobacillus amylovorus
           GRL 1112]
          Length = 357

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 6/154 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI+ L+ G G+R+SE   +  Q++    + L +  KG +   VP+       I +Y 
Sbjct: 189 RDMAIIALILGTGIRVSECAGVDLQDLNLKDAVLDVTRKGGQKDSVPIAEWTLDYIQKYK 248

Query: 215 DLCPFDLNLNIQLPLFRGIR----GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           ++     + + +   F   R     + +     ++ + +     G PL  T H LRH+ A
Sbjct: 249 NIRMKRYSADQKETAFFLTRWHNQTRRITTNAIEKMVNKYSAAFGHPL--TPHKLRHTLA 306

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + L     D   +   LG    + T +YT+V+ K
Sbjct: 307 SELYEVTKDQVLVAQQLGQKGTTATDLYTHVDQK 340


>gi|269956536|ref|YP_003326325.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894]
 gi|269305217|gb|ACZ30767.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894]
          Length = 362

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 24/149 (16%)

Query: 167 GLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVRKAILEYYD--------L 216
           G R+SE      +++  +  Q+  RI GKG  +R V L   +   + EY          L
Sbjct: 183 GPRVSELAGADVEDLAREPGQTRWRIVGKGGVVRTVALSEPLAATLDEYVTGLRPRLAAL 242

Query: 217 CPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQL-RRYLG-LPLS----TTAHTLRHSF 269
            P D +    L L +RG R       V  + IR L  R +G +P       T H LRH+ 
Sbjct: 243 RPDDDDAQRALLLTWRGRR-------VDTQAIRGLLARAVGRMPAPYRRPATPHALRHTT 295

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           AT L++ G D++ +  +LGH  ++TT +Y
Sbjct: 296 ATLLVAQGWDVKVVAELLGHASIATTGVY 324


>gi|166032543|ref|ZP_02235372.1| hypothetical protein DORFOR_02258 [Dorea formicigenerans ATCC
           27755]
 gi|166026900|gb|EDR45657.1| hypothetical protein DORFOR_02258 [Dorea formicigenerans ATCC
           27755]
          Length = 400

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 30/43 (69%), Gaps = 1/43 (2%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVN 302
           T HTLRH++AT    NG D + +Q +LGH  L+ TT +YT+V+
Sbjct: 343 TCHTLRHTYATRCYENGVDQQVVQKLLGHSTLAMTTDLYTHVS 385


>gi|315441478|ref|YP_004074355.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315265133|gb|ADU01874.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
          Length = 370

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 94/220 (42%), Gaps = 51/220 (23%)

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTS---HETKWIDA-RNSAILYLLYGCGLRISEALSL 176
           ++   P + +E Q L    + L+  +   H    + A R++A+L  +Y  GLR  E + L
Sbjct: 145 RAGRRPLSFDEVQELFDAADGLVEAARSRHRKGSLSALRDAAMLKTVYAYGLRRQEVVGL 204

Query: 177 TPQNIMDDQSTLRI------------QGKGD-----KIRIVPLLPSVR--KAILEYYDLC 217
              +I+D +S  ++             GKG      K R V  +P +     +LE+Y   
Sbjct: 205 ---DIVDLRSNPKVPAYGRFGGLFVRHGKGSHGDAPKRRTVLTVPEMDWIVGVLEHY--- 258

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVF--QRYIR-----------QLRRYLGLPLSTTAHT 264
                +    P F+  R    +PG++  +R  R             R   GLP     H+
Sbjct: 259 -----VAEVRPCFQPGR----HPGLWITERQGRLSKRSANEAFTAARDAAGLPKELDLHS 309

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           LRHS+ THL       R +Q  +GH   STT IY++V+ +
Sbjct: 310 LRHSYVTHLTEFDYPERFVQDQVGHAYASTTSIYSHVSDE 349


>gi|303236616|ref|ZP_07323197.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483120|gb|EFL46134.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 337

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 9/90 (10%)

Query: 232 GIRGKPLNPGVFQRYIRQ--LRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           G RG+ L    F+  + Q  L+R+L   G+    T H  RHSF +  +  G D+  IQ+ 
Sbjct: 244 GERGEGLIFEDFKDKMLQGPLQRWLTAAGITKKITFHCTRHSFGSLHVEMGTDMAVIQAY 303

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           LGH  ++TTQIY+ + ++     M ++ D+
Sbjct: 304 LGHKNITTTQIYSKIAAQQ----MCQVVDK 329


>gi|299758063|dbj|BAJ10038.1| transposase B [Staphylococcus aureus]
          Length = 630

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 115/282 (40%), Gaps = 32/282 (11%)

Query: 38  SYECDTRQFLI-FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS--- 93
           SY  D  Q L  F  F   +   +Q + QL+  EI A++S+     I   ++   +S   
Sbjct: 236 SYVSDIAQRLKEFFNFLDMKFKQVQRVHQLTRVEIEAYLSELNMMGIKPSTITGRISILE 295

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
           G+ S L  L+   + ++  I +    K   + PR ++E     +++ +  H     ++I 
Sbjct: 296 GLFSTLLRLEWDDVPSKILIYSEDYPKIPRAKPRFIDE----FVLEQLNSHLDKLPEYI- 350

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPSVRKA 209
              + +  ++  CG+RISE  +L    +++D+         Q K  K  IVP+   V   
Sbjct: 351 ---ATMTMIVQECGMRISELCTLKKGCLLEDKDGDFFLKYYQWKMKKEHIVPISKEVALL 407

Query: 210 ILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQ------RYIRQLRRYLGLPLS 259
           I    D       ++ + P    LF    G PL    F+       Y + +    G    
Sbjct: 408 IKVRED------KVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKSGEIYR 461

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             AH  RH+  T +++NG     +Q  LGH     T  Y ++
Sbjct: 462 FHAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHI 503


>gi|257091623|ref|YP_003165266.1| hypothetical protein CAP2UW1_4694 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048632|gb|ACV37819.1| hypothetical protein CAP2UW1_4694 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 324

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 96/238 (40%), Gaps = 35/238 (14%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV-------- 138
           +  RS   ++ F+ YL++ +  TE    ++   +     P    E + + L+        
Sbjct: 69  TWARSWGRLRHFICYLRQFEPDTEIPEASLFGPEPGRVAPHIYREDEVVDLLAAARTLGP 128

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197
              L   ++ET         +  L+   GLR+SEA+ L   ++   +  L I Q K  K 
Sbjct: 129 SGSLRPFTYET---------LFGLMASTGLRVSEAIHLRDTDVDLKRGMLTIRQTKFAKS 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRY 253
           R +P+ PS  KA++ Y       L +   +P   G RG     PL      R    LR  
Sbjct: 180 RQLPIHPSTVKALVRYRKQRERHLPMTTGMPFLIGSRGCRLGLPLGERQAHRVFTSLRDG 239

Query: 254 LGL-----PLSTTAHTLRHSFATHLL----SNGGDLR----SIQSILGHFRLSTTQIY 298
           LG        +   H LRH+FA   L    ++G D+     ++ + +GH  +  T  Y
Sbjct: 240 LGWVNRGGHDAPRLHDLRHTFAVRRLVRWYADGADVDQKMLALSTYMGHAEIFYTYWY 297


>gi|257083313|ref|ZP_05577674.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|256991343|gb|EEU78645.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
          Length = 309

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 13/147 (8%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212
            + L+   GL  SEAL+LTP++    +  + I+   +         S       RK  ++
Sbjct: 141 FILLVVKTGLCFSEALALTPKDFDFSKQKITIEKTWNYKNPTGFFQSTKNESSKRKVQID 200

Query: 213 YYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +     F     N+    P+F  ++G+  N  +  R ++ L +   +P+  T H+LRH+ 
Sbjct: 201 WQTAMQFSQLIRNMPPMEPIF--VKGRVFNSTINSR-LKVLCKRAQIPV-ITVHSLRHTH 256

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           A+ LL  G  + S+ + LGH  ++TTQ
Sbjct: 257 ASLLLFAGVSIASVATRLGHSSMTTTQ 283


>gi|228916332|ref|ZP_04079902.1| hypothetical protein bthur0012_35480 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228843530|gb|EEM88608.1| hypothetical protein bthur0012_35480 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 230

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 4/99 (4%)

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
           L  F+ N+N     ++  +G  ++  +F  + R L++ + +P S   H+LRH+ A  LL 
Sbjct: 126 LISFNQNVNSLQQEYKKAKGN-IDISIFNAFSRILKK-VNIP-SLDIHSLRHTHAVLLLE 182

Query: 276 NGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDWMMEI 313
           +G +L+ IQ  LGH  +  T+ +Y++++ K   D + E 
Sbjct: 183 SGANLKYIQERLGHKSIEMTSNVYSHISDKINKDSISEF 221


>gi|324997183|ref|ZP_08118295.1| phage integrase family protein [Pseudonocardia sp. P1]
          Length = 378

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LFRG  G P +      + R+ RR  G P +   H LRH FA+ L++ G D+ ++Q  LG
Sbjct: 273 LFRGENGNPPHQNTVGYWWRKTRRDAGHP-TIRLHDLRHFFASGLIAAGCDVVTVQRALG 331

Query: 289 HFRLSTT 295
           H   + T
Sbjct: 332 HSSATVT 338


>gi|295087377|emb|CBK68900.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 403

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 115/269 (42%), Gaps = 34/269 (12%)

Query: 52  FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS-GIKSFLKYLKK---RKI 107
           F+  +++ + +   ++   +    SK   QK+G  SLK S+  G+K+ L Y  K   R I
Sbjct: 134 FFRLQEMGVYSFESITEDAVLEVFSKDEKQKMG-HSLKYSVEYGLKACLPYYGKSVERII 192

Query: 108 TTESNILNMR-NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
                I NMR N++        L E Q LT + + L H       I  ++ AI+ L    
Sbjct: 193 AYLPAIPNMRKNIQ-------YLTE-QELTAIRHTLEHDGT----ISLQDKAIITLAMYT 240

Query: 167 GLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYY----DLCPFD- 220
           GLR  +  +LT +N   +   ++I Q K  +   +PL   V  A+ +Y       CP   
Sbjct: 241 GLRGCDISALTLENFDWEHDLIKITQAKTGQPLTLPLRAVVGNAVFDYLLKERPQCPEPY 300

Query: 221 LNLNIQLPLFRGIRGKPLNP----GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
           + L + +P  R +    L+      +++  IRQ     G     + H  RH  AT LL  
Sbjct: 301 VFLTVHVP-HRRLHTSNLDAICSKVMYKAGIRQ-----GENERKSMHLFRHHVATSLLQG 354

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           G     I + LGH   S+   Y +   K+
Sbjct: 355 GVQQPVISATLGHSSPSSLDRYLSAEFKH 383


>gi|262384905|ref|ZP_06078034.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262293457|gb|EEY81396.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 235

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 10/82 (12%)

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRY----------LGLPLSTTAHTLRHSFATHLLSN 276
           L LF  + G+      ++ Y R L R+           G+ L  T++T+RHSFA+ L   
Sbjct: 126 LYLFPFLSGRRTGEAAYKEYNRTLSRFNHDLKLLARSTGVTLPVTSYTIRHSFASFLKEQ 185

Query: 277 GGDLRSIQSILGHFRLSTTQIY 298
              +  I  +LGH  + TTQIY
Sbjct: 186 DVSIEVISELLGHKSIKTTQIY 207


>gi|258453038|ref|ZP_05701031.1| integrase [Staphylococcus aureus A5948]
 gi|257859248|gb|EEV82103.1| integrase [Staphylococcus aureus A5948]
          Length = 405

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 84/208 (40%), Gaps = 32/208 (15%)

Query: 132 KQALTLVDNVLLHTSHETKWIDARN----SAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           K+ L   D ++ H  H T+    RN     A++      G+RI E L++   NI  +  T
Sbjct: 192 KELLQCFDYLIKHKRHATR---KRNYEMVKALVEFQINNGMRIGELLAIKKDNINYEDKT 248

Query: 188 LRIQGK----GDK----------------IRIVPLLPS----VRKAILEYYDLCPFDLNL 223
           L I G      DK                 R + L       ++  IL+      ++ + 
Sbjct: 249 LDIDGTINWVTDKETGAFGVKETTKTSKSYRTIGLTTQSINLLKTLILDNKKENQWNEDF 308

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             +  +F    G P++       I++      +    T HTLRH+  + L   G +L++I
Sbjct: 309 IDRGYVFTNTAGSPIDLNKVNSIIKEATEISSINKRVTTHTLRHTHISTLAQLGINLKAI 368

Query: 284 QSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           Q  +GH    TT +IYT+V  +   D M
Sbjct: 369 QDRVGHSDYKTTLEIYTHVTDQMAKDMM 396


>gi|158311904|ref|YP_001504412.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158107309|gb|ABW09506.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 373

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 31/53 (58%)

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           R  LGL  +   H+LR S+ THL+ +G D   +Q  +GH   STT IY  V+S
Sbjct: 295 RDALGLDPALDVHSLRRSYVTHLIEDGYDALFVQQQVGHEHASTTAIYICVSS 347


>gi|329314332|gb|AEB88745.1| Transposase B [Staphylococcus aureus subsp. aureus T0131]
          Length = 630

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 115/282 (40%), Gaps = 32/282 (11%)

Query: 38  SYECDTRQFLI-FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS--- 93
           SY  D  Q L  F  F   +   +Q + QL+  EI A++S+     I   ++   +S   
Sbjct: 236 SYVSDIAQRLKEFFNFLDMKFKQVQRVHQLTRVEIEAYLSELNMMGIKPSTITGRISILE 295

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
           G+ S L  L+   + ++  I +    K   + PR ++E     +++ +  H     ++I 
Sbjct: 296 GLFSTLLRLEWDDVPSKILIYSEDYPKIPRAKPRFIDE----FVLEQLNSHLDKLPEYI- 350

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPSVRKA 209
              + +  ++  CG+RISE  +L    +++D+         Q K  K  IVP+   V   
Sbjct: 351 ---ATMTMIVQECGMRISELCTLKKGCLLEDKDGDFFLKYYQWKMKKEHIVPISKEVALL 407

Query: 210 ILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQ------RYIRQLRRYLGLPLS 259
           I    D       ++ + P    LF    G PL    F+       Y + +    G    
Sbjct: 408 IKVRED------KVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKSGEIYR 461

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             AH  RH+  T +++NG     +Q  LGH     T  Y ++
Sbjct: 462 FHAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHI 503


>gi|315607651|ref|ZP_07882646.1| integrase [Prevotella buccae ATCC 33574]
 gi|315250834|gb|EFU30828.1| integrase [Prevotella buccae ATCC 33574]
          Length = 435

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 15/182 (8%)

Query: 158 AILYLLYGC--GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVRKAIL 211
           A L  ++ C  GL I++  +L  ++I    D Q  +R + +  K+  +VPL P     I 
Sbjct: 238 ARLMFIFSCFTGLAIADMETLQYKHIQTAADGQKYIRKERQKTKVEFVVPLHPIAETIIS 297

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGK-PLNP----GVFQRYIRQLRRYLGLPLSTTAHTLR 266
                   DL         +   G    +P     V    +  + +  G+    + H  R
Sbjct: 298 HCRKANHNDLTTGQDEQTMKEKDGDFVFHPDCTRSVMSAKLCIVGKACGISQRLSFHMAR 357

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
           H+F T  LS G  + SI  ++GH  +S+TQIY  V        + E  D+    ++ K+K
Sbjct: 358 HTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDCK----ISEDMDRLIAKLSSKEK 413

Query: 327 KN 328
           KN
Sbjct: 414 KN 415


>gi|315148958|gb|EFT92974.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4244]
          Length = 309

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 13/147 (8%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212
            + L+   GLR SEAL+LTP++    +  + I+   +         S       RK  ++
Sbjct: 141 FILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGFFQSTKNESSKRKVQID 200

Query: 213 YYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +     F     N+    P+F  ++G+  N  +  R ++ L +   + +  T H+LRH+ 
Sbjct: 201 WQTAMQFSQLIRNMPPMEPIF--VKGRVFNSTINSR-LKVLCKRAQISV-ITVHSLRHTH 256

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           A+ LL  G  + S+ + LGH  ++TTQ
Sbjct: 257 ASLLLFAGVSIASVATRLGHSSMTTTQ 283


>gi|229182255|ref|ZP_04309537.1| Tyrosine recombinase [Bacillus cereus 172560W]
 gi|228601270|gb|EEK58809.1| Tyrosine recombinase [Bacillus cereus 172560W]
          Length = 224

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 8/152 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG---DKIRIVPLLPSVRKAIL 211
           R+ AIL L  G G+R+SE   L  ++I   +  + +  KG   D + I P+  +  +  L
Sbjct: 59  RDIAILSLFLGSGIRVSELADLRMEDINIKERLIDVIRKGNKEDSVWITPIALNDLEKYL 118

Query: 212 EYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           E  D    P     N+ L  ++    +PL+    Q  + +  +  G  +S   H LRH+ 
Sbjct: 119 EIRDSKYAPGKELKNVFLSKYKHT-AQPLSVRAIQDIVEKYTKAYGKRMS--PHKLRHTL 175

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           A  L     D   +   LGH    T  +YT +
Sbjct: 176 ANKLYMEEKDSLQVMQQLGHTSQDTALLYTQL 207


>gi|226326688|ref|ZP_03802206.1| hypothetical protein PROPEN_00541 [Proteus penneri ATCC 35198]
 gi|225204909|gb|EEG87263.1| hypothetical protein PROPEN_00541 [Proteus penneri ATCC 35198]
          Length = 49

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 33/46 (71%), Gaps = 4/46 (8%)

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           + + GDLR++Q +LGH  LSTTQ+YT+++ ++    + ++YD  HP
Sbjct: 1   MESSGDLRAVQELLGHANLSTTQVYTHLDFQH----LAKVYDAAHP 42


>gi|306812751|ref|ZP_07446944.1| integrase family protein [Escherichia coli NC101]
 gi|305853514|gb|EFM53953.1| integrase family protein [Escherichia coli NC101]
          Length = 350

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 28/186 (15%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--------TKWIDARNSAILYLLYGCGLRISEALS 175
           S P  L   +  T+ +  +   +HE         K  D   + ++ +    G R  EA++
Sbjct: 154 SYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICLSTGARWREAVN 213

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           LT   +   + T  ++ KG K R +P+   + + I+    L  F+   +           
Sbjct: 214 LTRSQVTKYRITF-VRTKGKKNRSIPISKELYEEIMA---LDGFNFFTDC---------- 259

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  FQ      +  + LP     H LRH+F  H + +GG++ ++Q ILGH  +  T
Sbjct: 260 ------YFQFLSVMEKTSIVLPRGQLTHVLRHTFTAHFMMSGGNILALQKILGHHDIKMT 313

Query: 296 QIYTNV 301
             Y ++
Sbjct: 314 MRYAHL 319


>gi|298674305|ref|YP_003726055.1| integrase family protein [Methanohalobium evestigatum Z-7303]
 gi|298287293|gb|ADI73259.1| integrase family protein [Methanohalobium evestigatum Z-7303]
          Length = 191

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 14/161 (8%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGD-KIRIVPLLPSVRKAI---LEYY 214
           L+Y   LR+SEAL++  +++  +   + I   +GK D +++  P   SV K +    E+ 
Sbjct: 32  LMYTPALRVSEALNVRVRDLDFENECIEIYGGKGKDDTEMQKAPCNISVLKRLKRYAEHS 91

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           DL P       +  +F   + K     V+   + +L    G+      HTLR S A HLL
Sbjct: 92  DLRP------KEYIMFSQKKKKASRFHVYN-VLNKLCSQAGIDKKIGTHTLRRSRAEHLL 144

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
             G  L  +   L H  L+TT  Y +V++ +    M +I D
Sbjct: 145 DRGLSLTYVSRFLRHKNLATTMAYLDVSTTDIQREMSKIDD 185


>gi|296110696|ref|YP_003621077.1| integrase [Leuconostoc kimchii IMSNU 11154]
 gi|295832227|gb|ADG40108.1| integrase [Leuconostoc kimchii IMSNU 11154]
          Length = 306

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 12/147 (8%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV----PL--LPSVRKAILE 212
            + L+   GLR SEAL LTP +    +  L +    D   +V    P   + SVRK  L+
Sbjct: 137 FILLIAKTGLRFSEALGLTPNDFDFSRQNLNVSKTWDYKSVVGDFAPTKNMSSVRKIQLD 196

Query: 213 YYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +  +  F     NL    P+F G   K +       ++ +  +   + +  + H+LRH+ 
Sbjct: 197 WQTVIQFSQLAKNLPDDKPIFAG--DKRIFNDTVNHFLERKCKQANISV-ISIHSLRHTH 253

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           A+ LL     + S+   LGH  ++TTQ
Sbjct: 254 ASLLLYANVSIASVARRLGHSNMTTTQ 280


>gi|213021541|ref|ZP_03335988.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 236

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 77/178 (43%), Gaps = 8/178 (4%)

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           S ++SF  +L  +     +    +   K    LP+ ++      L+D  L         +
Sbjct: 1   SALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDLNDP------L 54

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
             R+ A+L ++YG GLR+SE + L  +++  D   + + GKG K R +P+  +    I  
Sbjct: 55  AVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEH 114

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           + DL    L  + +  LF    GK ++    Q+   +     GL      H LRHSF 
Sbjct: 115 WLDL--RGLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFG 170


>gi|329313062|gb|AEB87475.1| Integrase [Staphylococcus aureus subsp. aureus T0131]
          Length = 405

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 84/208 (40%), Gaps = 32/208 (15%)

Query: 132 KQALTLVDNVLLHTSHETKWIDARN----SAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           K+ L   D ++ H  H T+    RN     A++      G+RI E L++   NI  +  T
Sbjct: 192 KELLQCFDYLIKHKRHATR---KRNYEMVKALVEFQINNGMRIGELLAIKKDNINYEDKT 248

Query: 188 LRIQGK----GDK----------------IRIVPLLPS----VRKAILEYYDLCPFDLNL 223
           L I G      DK                 R + L       ++  IL+      ++ + 
Sbjct: 249 LDIDGTINWVTDKETGAFGVKETTKTSKSYRTIGLTTQSINLLKTLILDNKKENQWNEDF 308

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             +  +F    G P++       I++      +    T HTLRH+  + L   G +L++I
Sbjct: 309 IDRGYVFTNTAGSPIDLNKVNSIIKEATEISSINKRVTTHTLRHTHISTLAQLGINLKAI 368

Query: 284 QSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           Q  +GH    TT +IYT+V  +   D M
Sbjct: 369 QDRVGHSDYKTTLEIYTHVTDQMAKDMM 396


>gi|294617321|ref|ZP_06696961.1| transposase B [Enterococcus faecium E1679]
 gi|291596430|gb|EFF27683.1| transposase B [Enterococcus faecium E1679]
          Length = 630

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 115/282 (40%), Gaps = 32/282 (11%)

Query: 38  SYECDTRQFLI-FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS--- 93
           SY  D  Q L  F  F   +   +Q + QL+  EI A++S+     I   ++   +S   
Sbjct: 236 SYVSDIAQRLKEFFNFLDMKFKQVQRVHQLTRVEIEAYLSELNMMGIKPSTITGRISILE 295

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
           G+ S L  L+   + ++  I +    K   + PR ++E     +++ +  H     ++I 
Sbjct: 296 GLFSTLLRLEWDDVPSKILIYSEDYPKIPRAKPRFIDE----FVLEQLNSHLDKLPEYI- 350

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPSVRKA 209
              + +  ++  CG+RISE  +L    +++D+         Q K  K  IVP+   V   
Sbjct: 351 ---ATMTMIVQECGMRISELCTLKKGCLLEDKDGDFFLKYYQWKMKKEHIVPISKEVALL 407

Query: 210 ILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQ------RYIRQLRRYLGLPLS 259
           I    D       ++ + P    LF    G PL    F+       Y + +    G    
Sbjct: 408 IKVRED------KVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKSGEIYR 461

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             AH  RH+  T +++NG     +Q  LGH     T  Y ++
Sbjct: 462 FHAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHI 503


>gi|282860291|ref|ZP_06269360.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282586888|gb|EFB92124.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 409

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYT 299
             +Q Y++ LR   G+    T HT RH+FAT + L  G  + ++  +LGH  +S T+ Y 
Sbjct: 325 ATYQSYLKALRLRAGISFPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYA 384

Query: 300 NVN 302
            V 
Sbjct: 385 KVT 387


>gi|262384293|ref|ZP_06077428.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262293996|gb|EEY81929.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 310

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 10/139 (7%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G+   +   L  +N+ D   +   Q  G  IR+   +P+  + +L+   +C  D +    
Sbjct: 147 GMAFVDFAHLRKENVKDGVLSYHRQKSGSFIRVE--IPADVRLLLDELAVCT-DKDSPYL 203

Query: 227 LPLFRGIRG-----KPLNPGV--FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
            P   G +         N  +  F R +R L    G+    T++T+RHSFAT L      
Sbjct: 204 FPFLSGKKTGEAAYAEYNGALLRFNRDLRSLAETCGVGEPVTSYTIRHSFATTLKEQDVP 263

Query: 280 LRSIQSILGHFRLSTTQIY 298
           +  I  +LGH  + TTQIY
Sbjct: 264 IEMISELLGHTSIKTTQIY 282


>gi|255013306|ref|ZP_05285432.1| integrase [Bacteroides sp. 2_1_7]
          Length = 311

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 10/80 (12%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRY----------LGLPLSTTAHTLRHSFATHLLSNGG 278
           LF  + G+      ++ Y R L R+           G+ L  T++T+RHSFA+ L     
Sbjct: 204 LFPFLSGRRTGEAAYKEYNRTLSRFNHDLKLLARSTGVTLPVTSYTIRHSFASFLKEQDV 263

Query: 279 DLRSIQSILGHFRLSTTQIY 298
            +  I  +LGH  + TTQIY
Sbjct: 264 SIEVISELLGHKSIKTTQIY 283


>gi|238926351|ref|ZP_04658111.1| recombinase [Selenomonas flueggei ATCC 43531]
 gi|238885755|gb|EEQ49393.1| recombinase [Selenomonas flueggei ATCC 43531]
          Length = 334

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 113/275 (41%), Gaps = 21/275 (7%)

Query: 42  DTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY 101
           DT +  I L  +   +  +  +  +   +IR ++ + RT+     +L    + I++F K 
Sbjct: 41  DTYELAIRLFLHWCMEQGLHPLNDVHDYQIRVYMEEMRTRGYSAATLMIKGAAIRAFYKV 100

Query: 102 LKKRKITTESNI--LNMRNLKKSNSLPRALNEKQALTLVDNV------LLHTSHETKWID 153
            ++     E+    L +RN       P+ L+E      VD +      L    +E + + 
Sbjct: 101 AQRLSFIAENPCADLQLRN-------PQHLDEDYKYLTVDQIKEICEGLAADKNELRRL- 152

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS--VRKAIL 211
            RN  I+YL+   GLR+ E + L+ ++I   +  + I+GKG    I P   +  + +A +
Sbjct: 153 -RNLLIVYLMGVEGLRVVEVMRLSDEDIDWQRGRIEIRGKGHAGIIYPCEETFGILRAYI 211

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY-IRQLRRYLGLPLSTTA-HTLRHSF 269
           E     P +  L   +        K     V  RY I +     GL     A H  RHS 
Sbjct: 212 EKRGAVPPESRLTPTIISCANNNPKGRISRVGIRYVINKALTEAGLKQPGYACHLFRHSC 271

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            T+L     DLR +Q  L       T  Y +V+ +
Sbjct: 272 GTNLYQETKDLRVVQETLRQRSPKVTAKYAHVHDR 306


>gi|266620800|ref|ZP_06113735.1| site-specific recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
 gi|288867585|gb|EFC99883.1| site-specific recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
          Length = 285

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 74/151 (49%), Gaps = 11/151 (7%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R + I+  + G G+RISE  ++T ++++   +++  +GK ++I ++P+   +++ + EY 
Sbjct: 130 RLALIMETICGTGIRISELQNITVESLLSGYASVSCKGK-ERIILIPV--KLKEKLREY- 185

Query: 215 DLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATH 272
             C       IQ   +F    GKP++       + +L     +       H +RH FA  
Sbjct: 186 --C---FKHEIQSGSIFITRSGKPIDRSNVWTEMNKLCEKANISHGKVFPHNMRHLFART 240

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
                 D+  +  ILGH  + TT+IYT  +S
Sbjct: 241 YYGKQKDIVHLADILGHSSIETTRIYTMTSS 271


>gi|134287379|ref|YP_001110762.1| putative integrase [Clostridium phage phiC2]
 gi|93117217|gb|ABE99507.1| putative integrase [Clostridium phage phiC2]
          Length = 404

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 3/71 (4%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G  +N       IR + + L +  +   H LRH+ AT LL NG +++ IQ  LGH +LST
Sbjct: 322 GSFVNHNNIDAAIRTINKKLNINFN--FHCLRHTHATLLLENGANVKYIQQRLGHSQLST 379

Query: 295 T-QIYTNVNSK 304
           T   Y++V SK
Sbjct: 380 TMDTYSHVTSK 390


>gi|325860402|ref|ZP_08173514.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325482060|gb|EGC85081.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 404

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 30/153 (19%)

Query: 162 LLYGC--GLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD 215
            L+ C  G    + + L+ ++++ DD  +L ++    K  +   + LLP   + I + Y 
Sbjct: 248 FLFACYTGAAYCDLMELSKKHLVRDDNGSLWLKFNRQKTGVLCRIKLLPEAVRLIEKMYS 307

Query: 216 -----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
                L PF     I+ P             ++Q  ++ LR   G+    T+HT RH+FA
Sbjct: 308 DERETLLPF-----IKYP-------------IYQSCLKALRLRAGISFPFTSHTARHTFA 349

Query: 271 THL-LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           T + L  G  + ++  +LGH  +S T+ Y  V 
Sbjct: 350 TLITLEQGVPIETVSKMLGHTNVSMTERYAKVT 382


>gi|307947331|ref|ZP_07662665.1| integrase family protein [Roseibium sp. TrichSKD4]
 gi|307769473|gb|EFO28700.1| integrase family protein [Roseibium sp. TrichSKD4]
          Length = 181

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 13/143 (9%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           + + L   G R+SE L+L P++I  ++ TL I+    + ++      V + +L       
Sbjct: 38  LCHCLLWTGARLSEVLALEPEHISGEEGTLTIRSLKKRGQVSYRRVPVPQTLLT------ 91

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
            DL L    P+F   R +     +  + + +     G         LRHSFA H +S+G 
Sbjct: 92  -DL-LQASAPIFGWGRTRGW---MTIKTVMEAADISGP--QACPRGLRHSFAVHAISSGV 144

Query: 279 DLRSIQSILGHFRLSTTQIYTNV 301
            L  +Q  LGH RL TT IY+  
Sbjct: 145 PLHLVQRWLGHQRLETTAIYSQA 167


>gi|242243126|ref|ZP_04797571.1| bacteriophage integrase [Staphylococcus epidermidis W23144]
 gi|242233474|gb|EES35786.1| bacteriophage integrase [Staphylococcus epidermidis W23144]
          Length = 348

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 13/170 (7%)

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
           +TK+  A    IL L+   G R S+ ++LT ++I  ++  L I   G K +  P   SV 
Sbjct: 179 KTKYYSASTHLIL-LMIETGGRFSDCINLTRKDI--NELNLEIFLNGTKNKSAPRYVSVS 235

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           K +++   L  +  N    +  +  I  GK +      + IR+    L +  + T+H  R
Sbjct: 236 KTLIQI--LLKYIENHTSSIEGYVFINNGKQITNSSVNKSIREACSKLNIHRNLTSHAFR 293

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           H+ A+ L+  G ++  I   LGH  +       +V  K+ G  + E Y+Q
Sbjct: 294 HTHASMLIHEGLNIYYISKRLGHSSI-------DVTLKDYGHLLKETYEQ 336


>gi|111025267|ref|YP_707687.1| integrase/recombinase [Rhodococcus jostii RHA1]
 gi|110824246|gb|ABG99529.1| probable integrase/recombinase [Rhodococcus jostii RHA1]
          Length = 311

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 20/157 (12%)

Query: 159 ILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           +  L+ GCGLR  EA  L   ++ +D      +QGK  K R+VP+   + + +       
Sbjct: 139 VFRLMLGCGLRPQEARRLRRADVDLDTMVLTVVQGKRRKDRLVPVGDDMTELLAR----- 193

Query: 218 PFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYL-GLPLSTTAHTLRHSFATH 272
            FD   +++ P     F    G+P  P        ++R    G+   +T +TLRH++AT 
Sbjct: 194 -FDRLADVRQPDREWFFEQTSGRPYPPRWLTAQYHRVRAIADGVAPGSTPYTLRHNYATR 252

Query: 273 LLSNGGD--------LRSIQSILGHFRLSTTQIYTNV 301
            L+   D        L  + + +GH   + T  Y ++
Sbjct: 253 TLARWVDEGRDLGVWLPYLSAYMGHATYTATAYYVHL 289


>gi|320324390|gb|EFW80469.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. glycinea str. B076]
          Length = 281

 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 110/241 (45%), Gaps = 30/241 (12%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           ++ I+  +    +  + +   +L +R++K  +    A       TL+  ++   + + + 
Sbjct: 53  VNAIRGVMNEAWRHDLISHEQLLKIRSIKPVSGTRLAKGRNIRRTLIRELMEACAADPRP 112

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS-VRKAI 210
              R++AI+ +LYG G+R SE+++L    I   + +LR+ GKG+K +++   P    KA+
Sbjct: 113 QGRRDAAIIAILYGSGMRKSESVNLDLSQIDFAERSLRVLGKGNK-QLIKYAPEWAFKAL 171

Query: 211 LEYYDL---C--------PFDLNLNIQLPLFRGIRGKPLNPGVFQRY-----IRQLRRYL 254
            ++ +L   C        PF  N        R  RG  +      ++      +Q  R +
Sbjct: 172 NDWLELRRSCLQPGQGDDPFLFN--------RIRRGSHITRDRITKHAIYFIAKQRGRQV 223

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G  ++   H  R SF T ++    DL   Q +  H  +STT  Y ++ S+N    ++E +
Sbjct: 224 G--VNIMPHDFRRSFITRVIEE-FDLSIAQKLAHHTHISTTASY-DMRSENERRNVVEGF 279

Query: 315 D 315
           D
Sbjct: 280 D 280


>gi|317010220|gb|ADU80800.1| integrase/recombinase XercD family protein [Helicobacter pylori
           India7]
          Length = 357

 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 122/270 (45%), Gaps = 33/270 (12%)

Query: 48  IFLAF-YTEEKITIQTIRQLSYTEIRAFI---SKRRTQKIGDRSLKRSLSGIKSFLKYL- 102
           +FL F Y + +I ++++  L+  ++  F+   +K R       S+ + +  ++ F  YL 
Sbjct: 77  LFLFFEYFDNRIKLKSLHNLAEEQVIDFLFGLAKNRKPS----SMAKYVMYLRQFFDYLD 132

Query: 103 KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
           +KR  + +  + N+   KK   LP+ LN+      +  +L +  H     + RN  IL L
Sbjct: 133 RKRNYSFDFELKNLSFAKKETHLPKHLNKNDFKAFIQALLKY--HPKTSFEKRNQCILLL 190

Query: 163 LYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           +   GLR  EAL L  +NI   ++   L I+GK +K R       + K  L+     P +
Sbjct: 191 IVLGGLRKFEALDLELKNIALENNHYRLLIKGKNNKERYT----YIEKEFLQ----VPLN 242

Query: 221 LNLN--IQLPLFRG--IRGKPLNPGV-----FQRYIRQLRRYLGLPLSTTA---HTLRHS 268
             L+   +L  F+G  +  K  N         + +I ++ +   + + +     H  RHS
Sbjct: 243 AWLSDIKRLKSFKGRFVFKKAKNNTTQKTCSLKGFIAKIFKLSNIDVKSYGLGLHLFRHS 302

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           FAT +     DL      LGH  L +T+IY
Sbjct: 303 FATFIYDETQDLVLTSRALGHSSLLSTKIY 332


>gi|315222639|ref|ZP_07864528.1| site-specific recombinase, phage integrase family [Streptococcus
           anginosus F0211]
 gi|315188325|gb|EFU22051.1| site-specific recombinase, phage integrase family [Streptococcus
           anginosus F0211]
          Length = 322

 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 116/284 (40%), Gaps = 38/284 (13%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ----KIGD 85
           G S  T+  YE   R  +        EKI    ++ ++  ++R F+   + +    K+  
Sbjct: 59  GCSNKTVHYYESTIRNAV--------EKIDKDVVK-ITTDDLRMFLDGYQEENNISKVTV 109

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            +++R LS   SF  +L+      +S++  +  +K   ++          T  D  L   
Sbjct: 110 DNIRRILS---SFFAWLEDEDYIVKSSVRRIHKVKTCKTVKE--------TYTDEALEIM 158

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
             E   +  R+ A++ LL   G+R+ E + L   +I  +     + GKG+K R V     
Sbjct: 159 RDECDGL--RDLAMIDLLASTGMRVGELVKLNCDDIDFENRECVVLGKGNKQRRVYFDAR 216

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN----PGVFQRYIRQLRRYLGLPLSTT 261
            +  + +Y      +   +    LF  ++ KP N     GV  R +R L   L L     
Sbjct: 217 TKLHLQKY-----LNSREDSNEALFVSLQ-KPYNRLLISGVEIR-LRNLGEKLNLH-KVH 268

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            H  R + AT  +  G  +  +Q +LGH  + TT  Y  VN  N
Sbjct: 269 PHKFRRTLATTAIDKGMPIEQVQQLLGHQSIDTTLQYAMVNQNN 312


>gi|307149816|ref|YP_003890859.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306986616|gb|ADN18494.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 321

 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 4/150 (2%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG---DKIRIVPLLPSVRKAIL 211
           R+ AIL LL+   LR  E      +++  D  +L I GKG    K  I    P+V     
Sbjct: 155 RDYAILRLLWDNALRRGEIEQADIKDLDLDGRSLLILGKGKGQQKQSITLSRPTVEAITQ 214

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
             +     D+N  + + L R   G  L      + +  +    G+    + H +RHS  T
Sbjct: 215 WLHARRELDINQPLFIALDRSSYGHRLTGTAIYKIVESIATGAGITKKLSPHRIRHSSVT 274

Query: 272 HLL-SNGGDLRSIQSILGHFRLSTTQIYTN 300
             L + GGD+R +Q +  H  L+T  IY +
Sbjct: 275 AALDATGGDVRKVQKLSRHADLNTLMIYDD 304


>gi|253734957|ref|ZP_04869122.1| integrase [Staphylococcus aureus subsp. aureus TCH130]
 gi|253727139|gb|EES95868.1| integrase [Staphylococcus aureus subsp. aureus TCH130]
          Length = 392

 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 26/212 (12%)

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
           KSF+ ++ K       NIL ++  KK   +   +  K+ L   +N+             R
Sbjct: 165 KSFMHHVNK-DYGMLKNILKVKEPKKKLEVLTNVEVKKLLGAANNI-------------R 210

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDD-----QSTL--RIQGKGDKIRIVPLLPSVRK 208
           +  ++ LLY  GLRI E LSL   +I  D     Q  L  R    G  ++       + +
Sbjct: 211 DKFLIQLLYETGLRIGEVLSLRIDDIKFDFRKGHQIVLKNRFNSNGTYLKTGERKIFISQ 270

Query: 209 AILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT- 264
           ++++ YD   +++   + +    LF  I+G+ +   +    I  L + L    S   H  
Sbjct: 271 SLIDLYDDYVYEIIDELSICSDYLFVKIKGRNVGEAMHYSDIYSLFKRLKHKTSINVHPH 330

Query: 265 -LRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             RH+ AT   +   D++ +Q  LGH  + TT
Sbjct: 331 LFRHTHATVFYNETKDIKQVQERLGHSNIQTT 362


>gi|237710854|ref|ZP_04541335.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|237725668|ref|ZP_04556149.1| tyrosine type site-specific recombinase [Bacteroides sp. D4]
 gi|298385293|ref|ZP_06994852.1| integrase [Bacteroides sp. 1_1_14]
 gi|229435476|gb|EEO45553.1| tyrosine type site-specific recombinase [Bacteroides dorei
           5_1_36/D4]
 gi|229454698|gb|EEO60419.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|298262437|gb|EFI05302.1| integrase [Bacteroides sp. 1_1_14]
          Length = 403

 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 18/140 (12%)

Query: 167 GLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPFDLN 222
           GL  ++  +L P++I    +  L I+   +K  +   VPL P+ R+ ILE Y+       
Sbjct: 251 GLAYADVYNLYPRHIGKTSEGRLYIRKPREKTEVETFVPLHPAARQ-ILELYN------T 303

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRY-IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
            +   P+F      PL       Y I  L   LG+  + + H  RH+F T L+S G  + 
Sbjct: 304 TDDTRPVF------PLPKRDILWYDIHGLGVMLGIQKNLSHHAARHTFGTLLVSEGISIE 357

Query: 282 SIQSILGHFRLSTTQIYTNV 301
           S   ++GH  +++TQIY  +
Sbjct: 358 SAAKMMGHADINSTQIYAQI 377


>gi|229194349|ref|ZP_04321171.1| Tyrosine recombinase [Bacillus cereus ATCC 10876]
 gi|228589139|gb|EEK47136.1| Tyrosine recombinase [Bacillus cereus ATCC 10876]
          Length = 224

 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 8/152 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AIL L  G G+R+SE   L  ++I   +  + +  KG+K   V + P     + +Y 
Sbjct: 59  RDVAILSLFLGSGIRVSELADLRMEDINLKERLIDVIRKGNKEDSVWITPIALNDLEKYM 118

Query: 215 DL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           ++      P     N+ L  ++    +PL+    Q  + +  +  G  +S   H LRH+ 
Sbjct: 119 EIRDNKYAPGKELKNVFLSKYKHT-AQPLSVRAIQDIVEKYTKAYGKRMS--PHKLRHTL 175

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           A  L     D   +   LGH    T  +YT +
Sbjct: 176 ANKLYMEEKDSLQVMQQLGHTSQDTALLYTQL 207


>gi|222080261|ref|YP_002540125.1| phage integrase family protein [Agrobacterium vitis S4]
 gi|221738906|gb|ACM39685.1| phage integrase family protein [Agrobacterium vitis S4]
          Length = 409

 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 123/306 (40%), Gaps = 27/306 (8%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           ++  F +  E + WL+    ERGL++ ++ +   + R FL +        +   +I  + 
Sbjct: 108 DVARFAVCDEYEIWLRE---ERGLARSSVAALMWEARNFLAWQIDCGSGGLAGLSIVAVD 164

Query: 68  -YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTE-SNILNMRNLKKSNS 124
            Y ++RA        K+   SLK     ++S L+YL    ++TT+ S  +    L     
Sbjct: 165 RYMDLRA-------AKLTRCSLKSVAERLRSLLRYLHITGRVTTDLSGHVIAPTLYAYEG 217

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           +P  L   Q    +  VL     +      R+ AIL  L   GLR  E  +L  ++I  D
Sbjct: 218 VPSILERDQ----IAAVLETARADKTPAGLRDYAILQFLATYGLRSGEICNLRIEDI--D 271

Query: 185 QSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
             T  I  +  K R    +PL+  V +A+L Y         +     +F   R       
Sbjct: 272 WRTEAIHVRHHKTRASTSLPLMEPVGEALLAYLR---SGRPVTDAREIFLRTRAPYRKLD 328

Query: 242 VFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                +R+L R  G+  P     H  RH+ A  +L      + I  +LGH    +T  Y 
Sbjct: 329 KLYSVVRRLLRDAGVQPPGKCGPHIFRHARAVEMLRVAVPQKVIGDVLGHRSTGSTAPYL 388

Query: 300 NVNSKN 305
            + +++
Sbjct: 389 KLATED 394


>gi|320100283|ref|YP_004175875.1| integrase family protein [Desulfurococcus mucosus DSM 2162]
 gi|319752635|gb|ADV64393.1| integrase family protein [Desulfurococcus mucosus DSM 2162]
          Length = 334

 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 12/146 (8%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLC 217
           IL LL   GLR  E L L  +++      +R+   K  K R V        A  E +++ 
Sbjct: 147 ILRLLVDTGLRSRELLGLRVEDVDFHSRVIRVSSAKYGKERYV-------TATGETFEML 199

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSN 276
              + LN   P   G R   L      + +++L    G+P      H LRH+FAT  L  
Sbjct: 200 RSWIALNGLKP---GDRLFNLTYSGLYKKLKRLAARAGIPPEKIRPHVLRHTFATRALRR 256

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVN 302
           G  L S+Q +LGH  + TTQ+Y +++
Sbjct: 257 GLSLPSLQRLLGHADIKTTQVYLHLS 282


>gi|317480812|ref|ZP_07939896.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316903035|gb|EFV24905.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 322

 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 26/153 (16%)

Query: 162 LLYGC--GLRISEALSLTPQNI---MDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD 215
            ++ C  GL  ++  +L P++I    + +  +RI+  K D    +PL P V + IL  Y+
Sbjct: 161 FIFSCMTGLAYADTRALHPRHIGRTSEGRRYIRIRRAKTDVEAFIPLHP-VAEQILGLYN 219

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNP----GVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
                              GKP+ P     V    +  +   LG+  + + H  RHSF T
Sbjct: 220 TTD---------------EGKPIFPLPVRDVLWYEVHGMGVALGMRENLSYHMARHSFGT 264

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             L+ G  + SI  ++GH  + +TQ+Y  V  +
Sbjct: 265 LTLTAGIPIESIARMMGHTNIDSTQVYAQVTDR 297


>gi|254303087|ref|ZP_04970445.1| recombinase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148323279|gb|EDK88529.1| recombinase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 290

 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 119/291 (40%), Gaps = 20/291 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N++  LE E      T+ S   D   FL +L      K  + T+ +L    I+ ++++ 
Sbjct: 12  KNFIFYLEFEENKKNNTVISIRKDLNNFLEYLN-----KKKLVTLDKLDELVIKEYLTEL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +   + + +  R LS IK F KYL    +  +   + +  +K        LN  +     
Sbjct: 67  KAADLSNSTYNRRLSSIKKFYKYLINNNLKEKGKEILIEGIKSDEKKLEYLNPDEI---- 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKI 197
            N+L     E  +   R+  +  LLY  G+ ++E LSL   N  ++ +    ++ K  K 
Sbjct: 123 -NLLREEMKEESFNVLRDRLMFELLYSSGMTVAELLSLGELNFNLEKREVYLLKNKISK- 180

Query: 198 RIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            ++    + ++  L++     +    + N NI   +F       L     +R I +    
Sbjct: 181 -VLYFSQTCKEVYLKFLVAKKEKFKEEDNSNI---IFVNNSNMRLTDRSIRRLINKYSEK 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             L    + +TLRHSF  ++L NG     +  +L    +    IY ++  K
Sbjct: 237 ANLQKEVSPYTLRHSFCLYMLKNGMPKEYLAKLLDLKSIGLLDIYEDLCKK 287


>gi|93352539|dbj|BAE93481.1| integron integrase [uncultured bacterium]
          Length = 211

 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 83/192 (43%), Gaps = 48/192 (25%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K+   LP  L + +  TL++N           +   N  I  LLYG G+R  E L L   
Sbjct: 31  KQPRHLPVVLTQGEVGTLLEN-----------MKGVNGLIARLLYGTGMRKMECLRLRIM 79

Query: 180 NIMDDQSTLRIQ-GKG--DKIRIVP--LLPSVRKAILEYYDLCPFDLNLN---IQLPLF- 230
           ++  D S + ++ GKG  D+I ++P  L+ S+R  +     L  +D++     ++LP   
Sbjct: 80  DVDFDYSQIHVRSGKGGKDRIALLPDCLVASLRSQLEHTEKLHKYDIDEGYGEVELPFAL 139

Query: 231 --------RGIRGKPLNP----------GVFQRY----------IRQLRRYLGLPLSTTA 262
                   R  + + + P          GV +R+          IRQ   +  +    + 
Sbjct: 140 ERKYPNVGREWKWQYVFPSTKRSVDKRTGVIRRHHWHDTNVSRAIRQSVCFSRISKHVSV 199

Query: 263 HTLRHSFATHLL 274
           HTLRHS ATHLL
Sbjct: 200 HTLRHSVATHLL 211


>gi|323139749|ref|ZP_08074786.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322394986|gb|EFX97550.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 331

 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 95/224 (42%), Gaps = 20/224 (8%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK---KSNSLPRALNEKQALTLVDNVLL 143
           + K+ L+ I+    +L   +I   +   ++R  K   K    P  L+ ++   L+D++ +
Sbjct: 99  TAKQRLAAIRMLFDWLVTGQIIPTNPAASVRGPKHVVKVGKTP-VLDPEETRILLDSIDV 157

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL--RIQGKGDKIRIVP 201
            T+     +  R+ A++ L+     R+  AL++  +++      L  R+  KG K   +P
Sbjct: 158 TTT-----VGLRDRALIALMVYSFARVGAALAMKVEDVYVQNRRLWVRLHEKGGKRHEMP 212

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGK------PLNPGVFQRYIRQLRRYL 254
              ++   +  Y D C   L  + +  LFR I RG       PL        IR+     
Sbjct: 213 CHHNLESYLHAYIDGC--YLAADPKAHLFRTIGRGTGELTLTPLPQANAYAMIRRRALAA 270

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           G+      H+ R +  T  L NGG L    S+  H    TTQ+Y
Sbjct: 271 GIATKVGNHSFRATGITAYLKNGGTLEKAASMANHASTRTTQLY 314


>gi|300361345|ref|ZP_07057522.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03]
 gi|300353964|gb|EFJ69835.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03]
          Length = 394

 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 89/203 (43%), Gaps = 43/203 (21%)

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-----GKGDK------- 196
            K ++ R  A   LL   GLR  EAL+LT ++I    +T+ +      G G+K       
Sbjct: 192 AKEVNIRVYAYFKLLSSTGLRKGEALALTWKDIDLINNTISVNKTISFGIGNKQVVNTPK 251

Query: 197 ----IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG------KPL-------- 238
                RIVPL  ++++ +L+Y           +   LF  I G      KP         
Sbjct: 252 TKQSKRIVPLSANLKQVLLDYRKSEKI-----LSDKLFHTIAGNYVSLSKPTQWLSEVYA 306

Query: 239 -NPGVFQRYIRQLRRYLGLPLST-----TAHTLRHSFATHLLSNGG-DLRSIQSILGHFR 291
            +  + +++ ++ +      L+      T H  RH+F T L+ N     +++Q +LGH  
Sbjct: 307 KDHKINEKFAKENKLDENYVLNKDLRHITLHRFRHTFTTLLIENTNVKPKTVQMLLGHAN 366

Query: 292 LSTT-QIYTNVNSKNGGDWMMEI 313
           +  T  IYT+VN+KN  D +  I
Sbjct: 367 IQMTLDIYTHVNNKNKEDAISSI 389


>gi|225405812|ref|ZP_03761001.1| hypothetical protein CLOSTASPAR_05033 [Clostridium asparagiforme
           DSM 15981]
 gi|225042679|gb|EEG52925.1| hypothetical protein CLOSTASPAR_05033 [Clostridium asparagiforme
           DSM 15981]
          Length = 348

 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 63/286 (22%), Positives = 122/286 (42%), Gaps = 36/286 (12%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI-QTIRQLSYTEIRAFISK-RRTQKIG 84
           + RG ++ T+++Y   T+++  F         TI + I  ++  +IR +++  +  +   
Sbjct: 75  VVRGCTEKTVETY---TQEYKTFFG-------TINKAIPNITTRDIRGYLAHCKLVRHNK 124

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           D ++      ++   ++L + +    + +L +++ K  + +    +++Q     D    H
Sbjct: 125 DTTINNKTRMLRGLFEWLTEEEYIDRNPMLRIKDNKVDHRVKEVFSDEQVTIYKDLAKQH 184

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
                     R+ AI+  L+  G+RISE ++L   +I        + GKG K R V    
Sbjct: 185 GK--------RSIAIVDFLHRTGVRISEMVALDRSDIDFQDRQCIVYGKGRKERPVYFSG 236

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN---PGVFQRYIRQLR----RYLGLP 257
                + +Y      +   +    LF GIR KP N       +  +R++R    R  G+ 
Sbjct: 237 DAAVHLRDY-----LESRTDNNPALFVGIR-KPFNRLTDDAVRLILREIRDMDDRMAGIA 290

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI-YTNVN 302
           ++   H  R  F T LL     L  +  + GH  L+TT+  Y N N
Sbjct: 291 IN--PHKWRRQFVTELLEKDVPLTLVADLAGHKNLNTTKDNYGNYN 334


>gi|168214703|ref|ZP_02640328.1| phage integrase family protein [Clostridium perfringens CPE str.
           F4969]
 gi|170713886|gb|EDT26068.1| phage integrase family protein [Clostridium perfringens CPE str.
           F4969]
          Length = 212

 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 27/165 (16%)

Query: 155 RNSAILYLLYGCGLRISEALSLT----PQNIMDDQSTLRIQG-----------------K 193
           RN  + YL    G R+ + ++LT     +++ DD+  ++ Q                  K
Sbjct: 35  RNLMLFYLAIATGYRMQDLVNLTIGEIKESLEDDKFIIQEQKQYKAWKKYIKDNPKSNRK 94

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
             K R   + P +RK + EY   C      +      +G  G  L+   +   + Q+ + 
Sbjct: 95  APKKREAHIKPKLRKLLKEY---CKNKAKSSYAFESNKG--GDHLSAKAYSNILSQVGKS 149

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           LGL  + + H+LR ++AT L     +L  ++  LGH  + TT++Y
Sbjct: 150 LGLK-NISGHSLRKTYATRLFEATRNLEYVRIALGHKSIETTKVY 193


>gi|220930105|ref|YP_002507014.1| integrase family protein [Clostridium cellulolyticum H10]
 gi|220000433|gb|ACL77034.1| integrase family protein [Clostridium cellulolyticum H10]
          Length = 313

 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 25/153 (16%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------GKGDKIRIVPLLPSVRKAILE 212
           ++ L+   GLR SEAL+LTP +   D ST +I        KG +   +    +  K ++ 
Sbjct: 139 LILLISKTGLRFSEALALTPNDF--DFSTHKISITKTWNYKGAEGGFMETKNTSSKRVI- 195

Query: 213 YYDLCPFDLNLNIQLPLFRG---------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
                P D  L +                ++G+  N  V  R ++ L +  G+P+  + H
Sbjct: 196 -----PIDAPLAVNFETLTKDLAANELIFVQGRVFNSTVNSR-LKYLCKTAGVPV-ISIH 248

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           +LRH+ A+ L+  G  + SI   LGH  ++TTQ
Sbjct: 249 SLRHTHASLLIFAGVSIASIAKRLGHSSVTTTQ 281


>gi|330970858|gb|EGH70924.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 351

 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 83/197 (42%), Gaps = 18/197 (9%)

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           +LN+R         R L+ ++   L+  V  H++    WI       + +    G+R SE
Sbjct: 157 MLNIRKPSPGGGRDRRLSPEEERDLLAAVNRHSNPMLGWI-------VRIALETGMRSSE 209

Query: 173 ALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYD--LCPFDLNLNIQLPL 229
             SL    +   +  +R+   K D  R VPL     +A     +  + P D NL     +
Sbjct: 210 ISSLRRPQVDLAKRVIRLSDTKNDSSRTVPLSKRATEAFQAAMNNPVRPIDCNL-----V 264

Query: 230 FRGIRGK--PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           F G  GK     P  F +   QL++ L LP     H LRH   + L+  G   + + +I 
Sbjct: 265 FFGESGKDGKRRPYTFTKIWGQLKKKLDLP-DFKFHDLRHEAVSRLVEGGLSDQEVSAIS 323

Query: 288 GHFRLSTTQIYTNVNSK 304
           GH  +   + YT++ ++
Sbjct: 324 GHRSMQMLKRYTHLRAE 340


>gi|258447338|ref|ZP_05695484.1| transposition regulatory protein tnpB [Staphylococcus aureus A6300]
 gi|257853864|gb|EEV76821.1| transposition regulatory protein tnpB [Staphylococcus aureus A6300]
          Length = 630

 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 115/282 (40%), Gaps = 32/282 (11%)

Query: 38  SYECDTRQFLI-FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS--- 93
           SY  D  Q L  F  F   +   +Q + QL+  EI A++S+     I   ++   +S   
Sbjct: 236 SYVSDIAQRLKEFFNFLDMKFKQVQRVHQLTRVEIEAYLSELNMMGIKPSTITGRISILE 295

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
           G+ S L  L+   + ++  I +    K   + PR ++E     +++ +  H     ++I 
Sbjct: 296 GLFSTLLRLEWDDVPSKILIYSEDYPKIPRAKPRFIDE----FVLEQLNSHLDKLPEYI- 350

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPSVRKA 209
              + +  ++  CG+RISE  +L    +++D+         Q K  K  IVP+   V   
Sbjct: 351 ---ATMTMIVQECGMRISELCTLKKGCLLEDKDGDFFLKYYQWKMKKEHIVPISKEVALL 407

Query: 210 ILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQ------RYIRQLRRYLGLPLS 259
           I    D       ++ + P    LF    G PL    F+       Y + +    G    
Sbjct: 408 IKVRED------KVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKSGEIYR 461

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             AH  RH+  T +++NG     +Q  LGH     T  Y ++
Sbjct: 462 FHAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHI 503


>gi|228982672|ref|ZP_04142931.1| Integrase [Bacillus thuringiensis Bt407]
 gi|228776855|gb|EEM25163.1| Integrase [Bacillus thuringiensis Bt407]
          Length = 327

 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 123/291 (42%), Gaps = 32/291 (10%)

Query: 35  TLQSYECDTRQFLIFLAFYTEE-KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
           T++SY  D   F  F   + +  +   + + QL    I +        +    +L R  +
Sbjct: 27  TIKSYRFDLEGFFTFAIPHNKSMEFEFKRLEQLLLLYINSLRVYNNKSEYEISTLNRKRA 86

Query: 94  GIKSFLKYLKKRKITTES---NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
             + ++K+L K +  +      I +M+N K  N     LN ++   +     L +   + 
Sbjct: 87  CFRKYIKFLNKWEYISSDFSHKIESMKNKKNPNK--DILNHEEVAKV--QYYLDSIQTSP 142

Query: 151 WIDA-------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL 202
           W+         RN  I Y L   GLR+SE  +L  ++    +  + + +GKG+K R +P 
Sbjct: 143 WLTPKKQEKYIRNRFIFYTLLYSGLRVSELTNLRWKHFNITEGIIIVDEGKGNKNRTIP- 201

Query: 203 LPSVRKAILEYYDLCPFDL--NLNIQLPLFRGI----RGKPLNPGVFQRYIRQLRRYLGL 256
              + + +++ YD     L      + P+  G       K  +  +  + IR + R +  
Sbjct: 202 ---IHEELVQEYDTYKSSLLSMYGKEHPILTGYLFPRNEKHPDISLTTKTIRLIIRTIVK 258

Query: 257 PLS-----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNV 301
             S      + H LRH+FA++ + N   +  + SILGH + S T  IY +V
Sbjct: 259 ESSIVDKHISPHNLRHTFASYSVLNNISIPVLSSILGHSKKSITMDIYAHV 309


>gi|256824531|ref|YP_003148491.1| site-specific recombinase XerD [Kytococcus sedentarius DSM 20547]
 gi|256687924|gb|ACV05726.1| site-specific recombinase XerD [Kytococcus sedentarius DSM 20547]
          Length = 373

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 31/55 (56%)

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           + R  LG   +   H LRHS+ THL+ +G D   +Q  +GH   STT +YT V+ 
Sbjct: 295 EYRDDLGFDAALHPHCLRHSYVTHLIEDGFDPLFVQQQVGHRWGSTTALYTGVSG 349


>gi|63146885|emb|CAI79468.1| integrase [Lactobacillus delbrueckii subsp. lactis]
          Length = 305

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 23/152 (15%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-KIRIVPLLP-----SVRKAILE 212
           ++ L+   GLR SEAL LT ++I  +Q  + +    D K       P     SVRK    
Sbjct: 138 MILLIAKTGLRFSEALGLTKEDIDLEQQMINVDKTWDYKSYTGSFKPTKNSSSVRK---- 193

Query: 213 YYDLCPFDLNLNIQL-PLFRGI-RGKPL--NPGVFQRYIRQLRR----YLGLPLSTTAHT 264
                P D  L +QL  + + +  G+P+     VF   +  L +     L +P+  + H 
Sbjct: 194 ----VPIDWKLAMQLNQVIQDLPNGEPIFAQKRVFNSTVNNLLKKHCKELNIPV-ISVHG 248

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           LRH+ A+ LL  G  + S+ + LGH  ++TTQ
Sbjct: 249 LRHTHASLLLFAGVSIASVANRLGHADMTTTQ 280


>gi|329964141|ref|ZP_08301307.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328525661|gb|EGF52690.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 426

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 106/238 (44%), Gaps = 8/238 (3%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKK 121
            +++ Y  +  ++   RT++I + ++   LS  ++     +K+ +   E N     N + 
Sbjct: 160 FKEVDYAFVTDYMHYLRTRRISENTVGMYLSCFRAVYNKARKQGVEVREGNPFADLNFRV 219

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
             +L RAL  K+ +  +  V L      +  +AR+   ++  Y  G+   + + L    I
Sbjct: 220 QETLKRALT-KEEIARIARVDLR--RHPRMEEARD-LFMFSFYCRGMSFVDVIHLRRDCI 275

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNP 240
           ++          G +++ V +LP + + I +Y    P+ L   I +   R +  +   + 
Sbjct: 276 VNGTLFYERNKTGQRLQ-VGMLPCMYEIIEKYRSRSPY-LFPCIDVASSRTVYTQYRYSL 333

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           G+  RY+++L   L +    T +  RHS+AT   + G  +  I   LGH    TT+IY
Sbjct: 334 GMINRYLKRLGELLHIATPLTTYVARHSWATIAKNEGVPVSIISEGLGHTSEKTTRIY 391


>gi|303327829|ref|ZP_07358269.1| prophage DLP12 integrase [Desulfovibrio sp. 3_1_syn3]
 gi|302862190|gb|EFL85124.1| prophage DLP12 integrase [Desulfovibrio sp. 3_1_syn3]
          Length = 320

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 70/154 (45%), Gaps = 16/154 (10%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAI--LE 212
            +A + LL   G R SE L    +N+  D   L +   K  K R +PL  +    I  L 
Sbjct: 157 EAAAIRLLLLTGARKSEILKARWENVRLDLRLLTVPLSKSGKPRHLPLSDAAVAVIRALP 216

Query: 213 YYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
               CP+         LF G   GKPL+  V+  +   LRR LGL      H LRH+FA+
Sbjct: 217 RGPGCPW---------LFPGHAPGKPLS-DVYL-FWDGLRRGLGL-ADVRIHDLRHTFAS 264

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            L++ G  L  +Q +LGH    TT  Y ++   +
Sbjct: 265 FLVNAGHSLYEVQKLLGHSDPRTTMRYAHLGQAS 298


>gi|262382525|ref|ZP_06075662.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262295403|gb|EEY83334.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 310

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           G F R ++ L   +G+    T++T+RHSFAT L      +  I  +LGH  + TTQIY
Sbjct: 225 GGFNRRLKILSESIGIHTRVTSYTIRHSFATTLKEQNVPIEMISELLGHKSIKTTQIY 282


>gi|154502507|ref|ZP_02039567.1| hypothetical protein RUMGNA_00320 [Ruminococcus gnavus ATCC 29149]
 gi|153796903|gb|EDN79323.1| hypothetical protein RUMGNA_00320 [Ruminococcus gnavus ATCC 29149]
          Length = 326

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 81/191 (42%), Gaps = 20/191 (10%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSVRKAI 210
           I    + ++ LLY CGLR+ EAL+L  +++  +   +R I  K  K R+VP+  ++   +
Sbjct: 138 IHMEMAVLIRLLYCCGLRLGEALNLKMKHLDLENGVIRIIHSKNKKQRLVPMHETLTNML 197

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--------PLSTTA 262
            +Y   C       I  P     + + L+P   +R  +++ R  G+          +   
Sbjct: 198 KDY---CKVIKIYGIDNPFLFPGQSEHLSPITAERQFKKILRKAGIIKGNEDPHKRAPCL 254

Query: 263 HTLRHSFATHL---LSNGG---DLRS--IQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           H LRH F  H    L   G   D+ S  +    GH  L  ++ Y   +S+   + M+   
Sbjct: 255 HCLRHCFMFHAFKQLETAGYHIDMASPYLSVYCGHESLVESEKYMKFSSELFEEDMLLFA 314

Query: 315 DQTHPSITQKD 325
           D T     + D
Sbjct: 315 DFTESLFPEVD 325


>gi|237719564|ref|ZP_04550045.1| integrase [Bacteroides sp. 2_2_4]
 gi|253565904|ref|ZP_04843358.1| integrase [Bacteroides sp. 3_2_5]
 gi|254882935|ref|ZP_05255645.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|282859997|ref|ZP_06269081.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282877475|ref|ZP_06286295.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|282880866|ref|ZP_06289559.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|294777530|ref|ZP_06742981.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|301312112|ref|ZP_07218033.1| mobilizable transposon, int protein [Bacteroides sp. 20_3]
 gi|304382591|ref|ZP_07365085.1| integrase [Prevotella marshii DSM 16973]
 gi|317478196|ref|ZP_07937364.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|317504497|ref|ZP_07962474.1| mobilizable transposon integrase [Prevotella salivae DSM 15606]
 gi|5453489|gb|AAB53787.2| integrase [Bacteroides fragilis]
 gi|229451424|gb|EEO57215.1| integrase [Bacteroides sp. 2_2_4]
 gi|251945008|gb|EES85446.1| integrase [Bacteroides sp. 3_2_5]
 gi|254835728|gb|EET16037.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|281300399|gb|EFA92748.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281305248|gb|EFA97315.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|282587203|gb|EFB92424.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|294448598|gb|EFG17147.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|300829900|gb|EFK60549.1| mobilizable transposon, int protein [Bacteroides sp. 20_3]
 gi|304336216|gb|EFM02458.1| integrase [Prevotella marshii DSM 16973]
 gi|315664395|gb|EFV04085.1| mobilizable transposon integrase [Prevotella salivae DSM 15606]
 gi|316905648|gb|EFV27434.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 372

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 9/90 (10%)

Query: 232 GIRGKPLNPGVFQRYIRQ--LRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           G RG+ L    F+  + Q  L+R+L   G+    T H  RHSF +  +  G D+  IQ+ 
Sbjct: 279 GERGEGLIFEDFKDKMLQGPLQRWLTAAGITKKITFHCTRHSFGSLHVEMGTDMAVIQAY 338

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           LGH  ++TTQIY+ + ++     M ++ D+
Sbjct: 339 LGHKNITTTQIYSKIAAQQ----MCQVVDK 364


>gi|331018714|gb|EGH98770.1| integrase/recombinase XerD, putative [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 320

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 59/275 (21%), Positives = 119/275 (43%), Gaps = 24/275 (8%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T ++Y     +FL + A      I +  +  ++   +  +I + + Q++   S+K+ L+ 
Sbjct: 42  TRRAYARAANEFLTWCA-----DIGVPDLATVAPLHVSTWI-ELQMQRLAAPSVKQRLAA 95

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPR--ALNEKQALTLVDNVLLHTSHETKWI 152
           ++    +L   ++   +   ++R    S    +   L+  +A  L+D++ + T       
Sbjct: 96  LRHLFDWLVVGQVVPNNPAASVRGPSHSARTGKTPVLDPSEARQLLDSIDVSTP-----A 150

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--QGKGDKIRIVPLLPSVRKAI 210
             R+ A++ L+     RI  AL++  +++      L +  + KG K   +P   S+ +A 
Sbjct: 151 GLRDRALIALMVFSFARIGAALAMRVEDVYTQNRRLWVLLKEKGGKQHAMPCHHSL-EAY 209

Query: 211 LEYYDLCPFDLNLNIQLPLFRGI-RGK------PLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           L  Y L    ++ +++ PLFR + RG        L        +R+     G+      H
Sbjct: 210 LHAY-LSGTGIDTDLKGPLFRTVGRGTSQLSTTALPQANAHAMVRRRALAAGIKTQIGNH 268

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           T R +  T  L NGG L +  ++  H    TTQ+Y
Sbjct: 269 TFRATGITAYLKNGGTLENAAAMANHASTRTTQLY 303


>gi|305663679|ref|YP_003859967.1| integrase family protein [Ignisphaera aggregans DSM 17230]
 gi|304378248|gb|ADM28087.1| integrase family protein [Ignisphaera aggregans DSM 17230]
          Length = 368

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 30/143 (20%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           GLR  EALS+T  +I      +R++  K  + RIV                  F  +L +
Sbjct: 159 GLRAEEALSITYGDIDLHNREIRVRNAKYGEERIV------------------FIGDLTL 200

Query: 226 QL--------PLFRGIRGKPLN-PGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLS 275
           Q+        P+    R  P++  G+++R ++ L +  G+ P     H LRH+FAT  L 
Sbjct: 201 QVLSTITSIKPVAPDERVIPISYSGLYKR-LKSLAKRAGIDPQKVRPHILRHTFATEALK 259

Query: 276 NGGDLRSIQSILGHFRLSTTQIY 298
            G ++  +Q ILGH  L TT+IY
Sbjct: 260 KGLNIAYLQKILGHRDLKTTEIY 282


>gi|255014532|ref|ZP_05286658.1| integrase [Bacteroides sp. 2_1_7]
 gi|293370765|ref|ZP_06617311.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292634125|gb|EFF52668.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 401

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 84/182 (46%), Gaps = 22/182 (12%)

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI- 181
           +++P  +  KQ+L+L +   L+ S E      R +AI   L   GLRIS+ L+L  +NI 
Sbjct: 193 DNIPCTIPVKQSLSLEEVRKLYNS-ECSVPVVRKAAIFSCL--SGLRISDILNLKWENIQ 249

Query: 182 --MDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
              D    L  +  K  +   VP+     + I       P   +  I    F G   + +
Sbjct: 250 TYADGGHYLDFKCVKTQRQTQVPIGDDAYELIQ------PQTTDKYI----FSGF-NRTM 298

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              V Q +I++     G+    T H  RH++A+  L  G D+ ++Q +L H  +STTQIY
Sbjct: 299 TYRVMQDWIKEC----GIKKHITFHCFRHTYASLQLELGTDIYTVQHLLNHKNVSTTQIY 354

Query: 299 TN 300
            +
Sbjct: 355 AS 356


>gi|189467368|ref|ZP_03016153.1| hypothetical protein BACINT_03756 [Bacteroides intestinalis DSM
           17393]
 gi|189435632|gb|EDV04617.1| hypothetical protein BACINT_03756 [Bacteroides intestinalis DSM
           17393]
          Length = 408

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 2/65 (3%)

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV-NS 303
           Y++++    G+  + T H  RH+FAT   L+ G  + ++  +LGH  + TTQIY  + N+
Sbjct: 325 YLKEIADVCGIKKNLTFHLARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNN 384

Query: 304 KNGGD 308
           K G D
Sbjct: 385 KIGND 389


>gi|150006960|ref|YP_001301703.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|298377388|ref|ZP_06987341.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_19]
 gi|149935384|gb|ABR42081.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|298265802|gb|EFI07462.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_19]
          Length = 310

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 10/139 (7%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G+   +   L  +N+ D   +   Q  G  IR+   +P+  + +L+   +C  D +    
Sbjct: 147 GMAFVDFAHLRKENVKDGVLSYHRQKSGSFIRVE--IPADVRLLLDELAVCT-DKDSPYL 203

Query: 227 LPLFRGIRG-----KPLNPGV--FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
            P   G +         N  +  F R +R L    G+    T++T+RHSFAT L      
Sbjct: 204 FPFLSGKKTGEAAYAEYNGALLRFNRDLRSLAETCGVGEPVTSYTIRHSFATTLKEQDVP 263

Query: 280 LRSIQSILGHFRLSTTQIY 298
           +  I  +LGH  + TTQIY
Sbjct: 264 IEMISELLGHTSIKTTQIY 282


>gi|323127261|gb|ADX24558.1| site-specific tyrosine recombinase XerS [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 356

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 114/289 (39%), Gaps = 55/289 (19%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRT----------QKIGDRSLKRSLSGIKSFLKYLKKRKI 107
           I + T+  L+  ++ AF+   R           + +   ++ R+LS + S  KYL +   
Sbjct: 66  IDLATLEHLTKKDLEAFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVE 125

Query: 108 TTESNILNMRNLKKSNSL--------PRALNEKQALTLVDNVL-----LHTSHETKWID- 153
             +      RN+ K  S          RA N KQ L L D  +     +   +E K  + 
Sbjct: 126 NDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQKLFLGDETMGFLEYVDKDYELKLSNR 185

Query: 154 ---------ARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVP 201
                     R+ AI+ LL   G+R+SEA++L  +++   M     +R  GK D + +  
Sbjct: 186 AKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMVIELIRKGGKRDSVNVAG 245

Query: 202 LLPSVRKAIL---------EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
                 +A L         E  DL  F       L  +RG+  + ++    ++ + +  +
Sbjct: 246 FAKPYLEAYLAIRKNRYKAEKQDLAFF-------LTEYRGVPNR-MDASSIEKMVGKYSQ 297

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                +  T H LRH+ AT L         +   LGH     T +YT++
Sbjct: 298 --DFKIRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHI 344


>gi|307565783|ref|ZP_07628249.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345510|gb|EFN90881.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 409

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYT 299
             +Q Y++ LR   G+    T HT RH+FAT + L  G  + ++  +LGH  +S T+ Y 
Sbjct: 325 ATYQSYLKALRLRAGISFPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYA 384

Query: 300 NVN 302
            V 
Sbjct: 385 KVT 387


>gi|268609765|ref|ZP_06143492.1| integrase family protein [Ruminococcus flavefaciens FD-1]
          Length = 372

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 102/245 (41%), Gaps = 50/245 (20%)

Query: 87  SLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNE-----KQALTLVDN 140
           ++K++   + S L+Y L KR+++  +      N+    S+ +A+N+      + L L+  
Sbjct: 121 TVKKAYEAVNSCLRYALSKREVSENA----ADNVSLPKSMKKAVNDISFFSDEELGLIYK 176

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL-------------TPQNIM----- 182
                    K I  R + I+  L   GLRI E L+L               +NI+     
Sbjct: 177 EAFKCYRNGKRI-YRLAEIIVFLVNTGLRIGECLALKWSDIDWNTNIFRVSRNIVYVKRR 235

Query: 183 DDQSTLRIQG------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
           D +S L   G             GD  R+VPL  +  +A+L    +     N N    +F
Sbjct: 236 DTKSMLAETGYSSLEQRSTKTKNGD--RVVPLNSAAIRALLSIRGI-----NKNNSY-IF 287

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
               G  + P    R  R +     +      H+LRH+FA+ + + G D++++  +LGH 
Sbjct: 288 STSNGGRVYPRNIDRMFRAILNRCHIK-GRGVHSLRHTFASRMFAEGVDVKTVSEVLGHS 346

Query: 291 RLSTT 295
            +S T
Sbjct: 347 DVSIT 351


>gi|256842038|ref|ZP_05547543.1| integrase [Parabacteroides sp. D13]
 gi|256736354|gb|EEU49683.1| integrase [Parabacteroides sp. D13]
          Length = 310

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 26/147 (17%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-----PFDL 221
           G+   +   L  +N+ D   +   Q  G  IR+   +P+  + +L+   +C     P+  
Sbjct: 147 GMAFVDFAHLRKENVKDGVLSYHRQKSGSFIRVE--IPADVRLLLDELAVCTDKDSPY-- 202

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRY----------IRQLRRYLGLPLSTTAHTLRHSFAT 271
                  LF  + GK      +  Y          +R L    G+    T++T+RHSFAT
Sbjct: 203 -------LFPFLSGKKTGEAAYAEYNGALLRFNCDLRSLAETCGVGEPVTSYTIRHSFAT 255

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIY 298
            L      +  I  +LGH  + TTQIY
Sbjct: 256 TLKEQDVPIEMISELLGHTSIKTTQIY 282


>gi|254558696|ref|YP_003065791.1| integrase/resolvase recombinase [Methylobacterium extorquens DM4]
 gi|254265974|emb|CAX21724.1| putative integrase/resolvase recombinase [Methylobacterium
           extorquens DM4]
          Length = 172

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 10/157 (6%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------GKGDKIRIVPLLPSVR 207
           RN A L L Y  GLR+ E  +L   +++D    +R Q        KG   R+V L   +R
Sbjct: 10  RNRASLMLSYLAGLRVGEIATLCWCDLLDGGGKVREQLRLSAAVTKGGHARVVFLNARLR 69

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + I +Y        +  +  P+    +    +     + +R      GL    ++H+ R 
Sbjct: 70  REIEQYRG--TLGQHPALLQPVLITQKRSAFSANTLCQLMRSWYDQAGLD-GGSSHSGRR 126

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            F T L  +G   ++I  + GH  LSTTQ Y +VN +
Sbjct: 127 WFITRLAHSGISPKAIMMLAGHRHLSTTQRYIDVNDE 163


>gi|33867206|ref|NP_898764.1| putative transposase [Rhodococcus erythropolis]
 gi|33669040|gb|AAP74034.1| putative transposase [Rhodococcus erythropolis]
          Length = 396

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 94/223 (42%), Gaps = 24/223 (10%)

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI-DA 154
           +  L +L  R     S+++ +R   +  S P  L  +Q   +++   +  S   +W+ + 
Sbjct: 145 RGLLAHLDARTAPRPSSLVRVRG-HRGTSRPPVLLPRQIQEILNGCAVFDSATGEWVGNL 203

Query: 155 RNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQ-------GKGDKIRI-----VP 201
           R+  +  LL   G+R+ EAL L   + +M    T  ++         G ++++     V 
Sbjct: 204 RDRFLFALLADTGMRLGEALGLRISDFVMGRGGTPFVEIVPREDNTNGARVKMMRQRRVY 263

Query: 202 LLPSVRKAILEY--YDLC---PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ----LRR 252
           +   + +   +Y  Y +C    F + L+ Q PL   +   PL   + +  +R     LRR
Sbjct: 264 VGSDLERLFADYLTYIVCRAAEFGITLDEQSPLLVNVMRPPLLAALRETTVRDKVSALRR 323

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           +   P   T H  RH+ AT LL        +   LGH  + TT
Sbjct: 324 HGAGPGDWTPHWFRHTHATALLLASTPEWVVSRRLGHAHVQTT 366


>gi|15966853|ref|NP_387206.1| putative integrase/recombinase protein [Sinorhizobium meliloti
           1021]
 gi|15076125|emb|CAC47679.1| Putative integrase/recombinase [Sinorhizobium meliloti 1021]
          Length = 239

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 72/171 (42%), Gaps = 40/171 (23%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQ--STLRIQGKGDKIRIVPLLPSVRKAILE 212
           R+ A L  L   G R+SEA+ +   ++  ++  S + + GKG + R++P+          
Sbjct: 52  RDRAFLLFLARTGARVSEAIGVNADDLQLERPRSQVLLHGKGRRDRVIPV---------- 101

Query: 213 YYDLCPFDLNLNIQLPLF-RGIRGKPLNPGVFQRYIRQLRRY------------------ 253
                P DL   +   L  RGI      P     +  +L R+                  
Sbjct: 102 -----PQDLARALAALLRERGIANHEPRPIFIGAHNERLTRFGATHIVRRAAAMAVAIRP 156

Query: 254 --LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              G P+S   H  RHS A  LL +G DL +IQ+ LGH +++TT  Y   +
Sbjct: 157 DLAGKPISP--HIFRHSLAMKLLQSGVDLLTIQAWLGHAQVATTHRYAAAD 205


>gi|116662238|ref|YP_829292.1| phage integrase family protein [Arthrobacter sp. FB24]
 gi|116613002|gb|ABK05711.1| phage integrase family protein [Arthrobacter sp. FB24]
          Length = 363

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 69/168 (41%), Gaps = 37/168 (22%)

Query: 167 GLRISEALSLTPQNIMDDQSTLR---------IQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           GLRI+E + L  ++   D                G+G K R+VP +    + I  +    
Sbjct: 181 GLRITETVMLDIRDWRPDLGGFGKLHVRYGKGAHGRGPKPRLVPAINGAAELIDWWLGDV 240

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-----------RRYLGLPLS------- 259
                 +   P        PL P   +R+ R+L           RR LGL +        
Sbjct: 241 RHRYGEDWADP------DAPLLPS--ERFDRELGRCGRVGGNALRRSLGLQVDQWLPAWS 292

Query: 260 --TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
              T H LRH  A+ L   G D++++Q +LGH  LSTT  Y +V S++
Sbjct: 293 GRMTPHVLRHYCASSLYGAGMDIKALQELLGHQWLSTTSGYIHVRSEH 340


>gi|322375862|ref|ZP_08050373.1| integrase/recombinase, phage integrase family [Streptococcus sp.
           C300]
 gi|321279130|gb|EFX56172.1| integrase/recombinase, phage integrase family [Streptococcus sp.
           C300]
          Length = 404

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 25/175 (14%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQG----------KGDKIRI- 199
           I  ++  + YL +  G R SE  +L  ++I   +S ++ IQ           KG+K  I 
Sbjct: 217 ISLKDYVLFYLTFFLGDRKSETYALQWKHIDFSKSQIQLIQALDRYGQVKSTKGNKKTIF 276

Query: 200 ------VPLLPSVRKAILEYYDLCPFDLNLNIQLPLF-----RGIRGKPLNPGVFQRYIR 248
                 + LL S +K   + Y+L  F +  N +  +F     +G   KPL+       ++
Sbjct: 277 SISSDLLQLLTSWKKQ--QKYELAKFGIISNPEQFIFTYIDTKGNINKPLHSDYLNNKMK 334

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            +R+        T H LRH+ AT     G  L +I   L H    TTQIY N ++
Sbjct: 335 TIRKRHPELTHATPHKLRHTGATLAKQAGMSLEAISEALTHSDTGTTQIYVNTSN 389


>gi|312888228|ref|ZP_07747805.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311299259|gb|EFQ76351.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 406

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 10/103 (9%)

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +PLL    + I++ Y   P   +++  LP+        L+      Y++++    G+   
Sbjct: 295 IPLLTQASE-IIQKYKHHPECADMDKVLPV--------LSNQKMNSYLKEIADICGINKE 345

Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T H  RH+FAT + L+NG  + S+  +LGH  + TTQ Y  +
Sbjct: 346 LTFHIARHTFATSVTLANGVSIESVSKMLGHKNIRTTQHYAKI 388


>gi|302336436|ref|YP_003801643.1| integrase family protein [Olsenella uli DSM 7084]
 gi|301320276|gb|ADK68763.1| integrase family protein [Olsenella uli DSM 7084]
          Length = 268

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 10/142 (7%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +++ L   G R+SE + L  +++  ++    I  KG K+R + +   +R+  L +     
Sbjct: 117 VVWFLGATGARVSELIKLKVEHV--EEGHFDIYSKGGKLRRLYIPKKLREEALSW----- 169

Query: 219 FDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSN 276
                     LF    GK + P G+ Q+  +  R+Y G+  S    H+ RH FA + L  
Sbjct: 170 LRERGRKSGYLFVNRYGKTITPRGISQQLKKYARKY-GIEESVVYPHSFRHLFAKNFLER 228

Query: 277 GGDLRSIQSILGHFRLSTTQIY 298
             D+  +  ++GH  + TT+IY
Sbjct: 229 YNDIALLADLMGHESIETTRIY 250


>gi|295841265|dbj|BAJ07036.1| integrase [uncultured bacterium]
          Length = 395

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 106/269 (39%), Gaps = 61/269 (22%)

Query: 54  TEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL---KKRKITTE 110
           TEE     T R L +  ++   +++ T              +++FL+++    K    T+
Sbjct: 140 TEETYCYWTGRYLGFCRLQRIDTRKSTS-------------VRAFLEHIVLKGKVAAATQ 186

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTL------VDNVLLHTSHET--KWIDARNSAILYL 162
           S  LN  N      L  +L +            +  VL     E+  +++    + +  L
Sbjct: 187 SIALNALNFWFGQVLGESLGDLGGFVKSRRPRKLPVVLTRGEVESLFRFLGGSEAIMAGL 246

Query: 163 LYGCGLRISEALSLTPQNI--MDDQSTLR-IQGKGDKIRIVP----------------LL 203
           LYG GLR++E + L  +++     Q  +R  +G  D++ ++P                L 
Sbjct: 247 LYGAGLRLTEVIRLRVKDVDFAGRQIAVRNSKGGKDRVTVLPDRSREPIARHLKKVKDLF 306

Query: 204 PSVRK----------AILEYYDLCPFDLNLNIQLPLFR-------GIRGKP-LNPGVFQR 245
              RK          A+   Y   P +       P  R       G R +  ++  V QR
Sbjct: 307 RKDRKRKFAGATFPEALGRKYPNGPLEWPWQFVFPASRLTVEAGTGKRRRHHIDDSVLQR 366

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
            +R+  R  G+  + T HTLRH+FATHLL
Sbjct: 367 AVREAARRSGMTKAVTCHTLRHTFATHLL 395


>gi|288930817|ref|YP_003434877.1| integrase [Ferroglobus placidus DSM 10642]
 gi|288893065|gb|ADC64602.1| integrase family protein [Ferroglobus placidus DSM 10642]
          Length = 403

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 80/188 (42%), Gaps = 30/188 (15%)

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            IK F K+L K ++ +       +N K    +    + K+ + +  N             
Sbjct: 106 SIKKFFKWLGKEELVSWIKCRGPKNRKLPEEILTEDDIKKMIDVAQN------------- 152

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQ--STLRIQGKGD--KIRIVPLLPSVRKA 209
           +R+ AI+ +LY  G R  E LS+  +N+  D+  + + + GK    +IR+V   P     
Sbjct: 153 SRDRAIISVLYESGCRAGEFLSMRMKNVSFDRYGAVIIVHGKTGYRRIRLVSSSPY---- 208

Query: 210 ILEYYDLCPFDLN----LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           + E+ ++ PF  N    L I    FR I   P N    +  +R +    G+      H  
Sbjct: 209 LAEWINMHPFRENPEAWLWISTKTFRRI---PYN--TLRAILRNIAIKAGIRKKVNPHAF 263

Query: 266 RHSFATHL 273
           RH+ ATHL
Sbjct: 264 RHARATHL 271


>gi|163792550|ref|ZP_02186527.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|159182255|gb|EDP66764.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
          Length = 256

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 12/137 (8%)

Query: 141 VLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGD 195
           V+L      ++++A    ++ A L   Y  GLR+SE ++L   ++   +  +R++ GKG 
Sbjct: 93  VVLSADEVVRFLEAVASLKSRAALTTAYAAGLRVSEVVALRVGDVDSGRMVIRVEHGKGG 152

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYL 254
           K R V L   +   +  Y+ L         +  LF G    KP++  V     R  R   
Sbjct: 153 KDRYVMLSAQLLGILRTYWRLA------RPEHWLFPGREASKPIDVQVLHAACRSARAAA 206

Query: 255 GLPLSTTAHTLRHSFAT 271
           GL    T HTLRHSFAT
Sbjct: 207 GLDKRVTVHTLRHSFAT 223


>gi|149924447|ref|ZP_01912810.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149814686|gb|EDM74262.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 377

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 79/186 (42%), Gaps = 32/186 (17%)

Query: 156 NSAILYLLYG------------CGLRISEALSLTPQNIMD-DQSTLRIQ----------- 191
             A  Y LYG             GLR+ E  SL  +  +D D+  +R+Q           
Sbjct: 190 EGAWAYELYGGMWPIYMVVAMRTGLRLGEMKSLRWREDLDLDRGRVRVQRSHSDKHGFAS 249

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            K  K R VPL     +A+  +      +L  + QL       G+PL        ++ + 
Sbjct: 250 PKNGKSRDVPLTLDALEALRSWRGQARGELVFS-QLS-----SGEPLRHRQPNNAVKAIA 303

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           + +GL    T H LRH+FA+H +  G  +R +Q  LGH  +  T  Y ++ +   GD M+
Sbjct: 304 KSVGLRQIHT-HVLRHTFASHAVMRGIPMRQVQEWLGHSSIVVTMRYAHL-ADGMGDAMI 361

Query: 312 EIYDQT 317
           +  D +
Sbjct: 362 QRLDPS 367


>gi|94442254|dbj|BAE93626.1| integron integrase [uncultured bacterium]
          Length = 211

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 83/192 (43%), Gaps = 48/192 (25%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K+   LP  L + +  TL++N           +   N  I  LLYG G+R  E L L   
Sbjct: 31  KQPRHLPVVLTQAEVGTLLEN-----------MKGVNGLIARLLYGTGMRKMECLRLRIM 79

Query: 180 NIMDDQSTLRIQ-GKG--DKIRIVP--LLPSVRKAILEYYDLCPFDLNLN---IQLPLF- 230
           ++  D S + ++ GKG  D+I ++P  L+ S+R  +     L  +D++     ++LP   
Sbjct: 80  DVDFDYSQIHVRSGKGGKDRIALLPDCLVASLRSQLEHTEKLHKYDIDEGYGEVELPFAL 139

Query: 231 --------RGIRGKPLNP----------GVFQRY----------IRQLRRYLGLPLSTTA 262
                   R  + + + P          GV +R+          IRQ   +  +    + 
Sbjct: 140 ERKYPNAGREWKWQYVFPSTKRSVDKRTGVIRRHHWHDTNVSRAIRQSVCFSRISKHVSV 199

Query: 263 HTLRHSFATHLL 274
           HTL H+FATHLL
Sbjct: 200 HTLSHTFATHLL 211


>gi|71898923|ref|ZP_00681090.1| Phage integrase [Xylella fastidiosa Ann-1]
 gi|71731335|gb|EAO33399.1| Phage integrase [Xylella fastidiosa Ann-1]
          Length = 364

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 65/144 (45%), Gaps = 16/144 (11%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDL 216
           L L YG   R    L L  +   D Q  L  Q   G+    +  P++P     I ++  L
Sbjct: 196 LALAYGTLARPETILGLQ-REFADTQRRLLTQNPPGRKQTKKHRPVVP-----ICDF--L 247

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
            P+ L+++   PL     GKP+    F+   R+LR   GLP  T    +RH+ AT L S 
Sbjct: 248 LPWILSVD-SGPLVH-WHGKPI--ASFKTAWRKLRTRAGLPKDTVPKVIRHTMATELRSA 303

Query: 277 GGDLRSIQSILGHFRL-STTQIYT 299
           G   + IQ +LGH     TT +Y 
Sbjct: 304 GVSAQDIQGMLGHRAYGGTTDVYA 327


>gi|325299955|ref|YP_004259872.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324319508|gb|ADY37399.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 385

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 74/161 (45%), Gaps = 36/161 (22%)

Query: 158 AILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQGKGDKIRIVPLLP--------SVRK 208
           A L+  Y  GLR S+   L+ +N +  D+    +  K  K  +   LP        +VR 
Sbjct: 236 AFLFCCY-TGLRYSDFTKLSEKNLVCPDKKHAWLLFKSQKTGVESQLPLDLLFQGKAVR- 293

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR-----QLRRYLGLPLSTTAH 263
            ILE Y+    D N   +L        KP NP V +  IR     Q+ ++         H
Sbjct: 294 -ILEKYE----DKNSFFRL--------KP-NPDVNKDLIRIGKLAQIEKHFSF------H 333

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + RH+ AT L+ +G  L ++Q +LGH  + TTQIY  V S+
Sbjct: 334 SSRHTNATLLIYSGAKLTTVQKLLGHRSIKTTQIYGEVFSQ 374


>gi|295841257|dbj|BAJ07030.1| integrase [uncultured bacterium]
 gi|295841283|dbj|BAJ07049.1| integrase [uncultured bacterium]
          Length = 285

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 96/249 (38%), Gaps = 52/249 (20%)

Query: 64  RQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           R++   EI AF+S       +   +  ++L+ I    K +  R++     I+     KK 
Sbjct: 51  REMGQPEIEAFLSHLAVDGNVAAATQNQALNAISFLYKRVLDRELGDLGAIVRA---KKP 107

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             LP  L   + + L+             +D  +     L+YG GLR+ E + L  +++ 
Sbjct: 108 RKLPVVLTRSEVMALLSR-----------LDGVSRLASGLMYGAGLRLMETVRLRAKDLD 156

Query: 183 DDQSTLRIQ-GKG--DKIRIVP-----------------------------LLPSV---- 206
            ++  L ++ GKG  D+I ++P                              +P      
Sbjct: 157 LERGELVVRNGKGGRDRITVLPARLANPLRDQLAHARALHLSDLAEGFGAVFMPDALARK 216

Query: 207 -RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            R A  E+     F      + P    +R         QR +++  R  GL    ++H+L
Sbjct: 217 YRGADREWSWQYVFPAAARSRDPRSGAMRRHHFGEAAVQRAVKRAARETGLVKRASSHSL 276

Query: 266 RHSFATHLL 274
           RHSFATHLL
Sbjct: 277 RHSFATHLL 285


>gi|325270644|ref|ZP_08137242.1| hypothetical protein HMPREF9141_2452 [Prevotella multiformis DSM
           16608]
 gi|324987039|gb|EGC19024.1| hypothetical protein HMPREF9141_2452 [Prevotella multiformis DSM
           16608]
          Length = 424

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 73/166 (43%), Gaps = 28/166 (16%)

Query: 167 GLRISEALSLTPQNIM---DDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY------DL 216
           GL   +   L P++I+   D    +RI+  K D   I+PLLP +   IL  Y      D 
Sbjct: 257 GLARVDMQRLKPKHIIRNADGTEEIRIKRQKTDVEAIIPLLP-IANQILSLYIKDKKADE 315

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LS 275
             F  NL I+   F  +     N G   R  + L          T H  RH+F+T + LS
Sbjct: 316 LIFP-NLTIRKASFACV-----NIGQICRIDKGL----------TFHMARHTFSTTICLS 359

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           NG  + ++  +LGH  + TTQIY  +      + M  + D+ H + 
Sbjct: 360 NGISMETLSKMLGHSNIGTTQIYGKITDHKIQEDMTALTDREHSAF 405


>gi|307293564|ref|ZP_07573408.1| integrase family protein [Sphingobium chlorophenolicum L-1]
 gi|306879715|gb|EFN10932.1| integrase family protein [Sphingobium chlorophenolicum L-1]
          Length = 378

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 6/139 (4%)

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           +R+SE LS+ P+++  D+  + I       R  P+   +   +    +  P D       
Sbjct: 229 MRMSEVLSIKPEHLDFDKRRIFIPSAKAGQREQPMTKGLSDFLKAQLESLPDDAEW---- 284

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
            LF     K       ++  R++ +  GL P     HT RH+  THL+  G DL ++Q +
Sbjct: 285 -LFPNSASKSGRVMTIRKAHRRVVKAAGLNPDEVLRHTFRHTAITHLVQAGVDLPTVQKV 343

Query: 287 LGHFRLSTTQIYTNVNSKN 305
            GH  L+    Y + N ++
Sbjct: 344 SGHKTLAMVARYAHANGEH 362


>gi|304389965|ref|ZP_07371922.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304326858|gb|EFL94099.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 381

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 74/174 (42%), Gaps = 26/174 (14%)

Query: 153 DARNSAILYLLYG-CGLRISEALSLTPQNIMDDQSTLRIQ--------------GKGDKI 197
           D     IL  L G  GLRI EAL+LTP  +  D+  +RI+               K  + 
Sbjct: 198 DGNQLEILVRLLGYTGLRIGEALALTPAALDLDRRIMRIERAVSEVSGRQVFGTPKNGRT 257

Query: 198 RIVPLLPSVRKA--ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R+VP+   +R+   +L        D        LF    G PL     + +       +G
Sbjct: 258 RVVPIPDFLRRDLRVLTRATRGGDDF-------LFATKHGTPLRASNLRLHFDMAALAVG 310

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGD 308
                  H LRH+ AT  +S G +++S+Q +LGH   S T  +Y ++   + GD
Sbjct: 311 -QAGLHIHDLRHTAATLAVSAGANVKSVQRMLGHSSASLTLDVYADLFEPDLGD 363


>gi|260662343|ref|ZP_05863238.1| site-specific recombinase [Lactobacillus fermentum 28-3-CHN]
 gi|260553034|gb|EEX25977.1| site-specific recombinase [Lactobacillus fermentum 28-3-CHN]
          Length = 394

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 22/164 (13%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------------GKG---DKIRIVPL 202
           IL+ L+  G+R  EA +LT +++     T+ I              GK      +R++ +
Sbjct: 219 ILWFLFMTGMRSGEAKALTWKDVDLKAGTIDINKSLLYKSVNNYKLGKTKNRQSMRVISI 278

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            P     + E+Y+    D  L  +        G PLN       +        +P + TA
Sbjct: 279 DPQTIDYLEEWYE----DQRLMTRSEFVLSQDGAPLNSTYINDIVHDYGDLAKVP-TVTA 333

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKN 305
           H LRHS A+ L+S G +   I+  LGH  + TT +IY ++  K+
Sbjct: 334 HALRHSHASLLISLGENPLVIRDRLGHKDVRTTLEIYGHLYPKS 377


>gi|256819688|ref|YP_003140967.1| integrase family protein [Capnocytophaga ochracea DSM 7271]
 gi|256581271|gb|ACU92406.1| integrase family protein [Capnocytophaga ochracea DSM 7271]
          Length = 429

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 130/306 (42%), Gaps = 48/306 (15%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102
           +R  LI    Y+ ++I I         E  AF    +  K    ++   +SGIK  L+  
Sbjct: 147 SRNALINFENYSNKRIKIDEYNAQLNDEFVAFCMNEK--KYSANTIGELVSGIKVLLRKA 204

Query: 103 KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
           K++  T  +++ N    K+  S+  AL+EK+   LV       S + +  + R+  IL L
Sbjct: 205 KEKGYTIANDLDNFTKTKEE-SVSVALSEKEIERLV---AFDFSKDKRLENTRDLMILGL 260

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGK------GDKIRIVPLLPSVRKAILEYYDL 216
               GLR+S+ ++L    I  D   + ++ +      G K+ ++PL   +++ I +    
Sbjct: 261 W--TGLRVSDVMALPA--IDPDSKFIEVEPQKTHNTSGAKV-VIPLHHHIKEMIRKRGMP 315

Query: 217 CPFD---LNLNIQ----LPLFRGI-RGKPLNP-------GVFQRYIRQLRRYLGLPLSTT 261
            P +    N NI+    L  F  I  G  +NP       GVF+++  QL          +
Sbjct: 316 TPLNSVVFNSNIKEVCRLVGFNDIVEGSLMNPKTRRKERGVFEKW--QL---------IS 364

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           +HT R SFAT+L        SI  I GH   ++   Y  V  K   + ++      H   
Sbjct: 365 SHTCRRSFATNLYLMNFPTLSIMKITGHTTEASFLKYIKVTPKEHAEKLL-----AHWEA 419

Query: 322 TQKDKK 327
             KDK+
Sbjct: 420 YYKDKE 425


>gi|218263976|ref|ZP_03477907.1| hypothetical protein PRABACTJOHN_03597 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222387|gb|EEC95037.1| hypothetical protein PRABACTJOHN_03597 [Parabacteroides johnsonii
           DSM 18315]
          Length = 382

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 35/57 (61%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + ++++    G+    + HT RH+FA   L+ GGD+ ++  +LGH  +++TQ+Y + 
Sbjct: 308 KCLKKIAAAAGIEKKISYHTSRHTFAVLALAAGGDIYTVGKLLGHTSINSTQVYADA 364


>gi|212695081|ref|ZP_03303209.1| hypothetical protein BACDOR_04619 [Bacteroides dorei DSM 17855]
 gi|212662397|gb|EEB22971.1| hypothetical protein BACDOR_04619 [Bacteroides dorei DSM 17855]
          Length = 435

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIR----QLRRYLG--LPLSTTAHTLRHSFATHL-LS 275
           L+I L +    R +     VF  Y R     L R LG       T H  RH+F TH+ LS
Sbjct: 309 LDIPLRIIEKYRDQRQGDKVFNLYARGYFIMLTRELGNVYGFDLTFHQARHNFGTHVTLS 368

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            G  + ++  ++GH  +STTQ+Y  V  K
Sbjct: 369 LGVPIETVSRMMGHMSISTTQLYAQVTDK 397


>gi|150007077|ref|YP_001301820.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|256840234|ref|ZP_05545742.1| integrase [Parabacteroides sp. D13]
 gi|298377497|ref|ZP_06987449.1| integrase [Bacteroides sp. 3_1_19]
 gi|301311260|ref|ZP_07217188.1| integrase [Bacteroides sp. 20_3]
 gi|149935501|gb|ABR42198.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|256737506|gb|EEU50832.1| integrase [Parabacteroides sp. D13]
 gi|298265516|gb|EFI07177.1| integrase [Bacteroides sp. 3_1_19]
 gi|300830834|gb|EFK61476.1| integrase [Bacteroides sp. 20_3]
          Length = 310

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           F R ++ L++  G+    T++T+RHSFA  L      +  I  +LGH  + TTQIY
Sbjct: 227 FNRNLKALKKAAGIASDVTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIY 282


>gi|300215352|gb|ADJ79765.1| DNA integration/recombination/inversion protein [Lactobacillus
           salivarius CECT 5713]
          Length = 308

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 76/177 (42%), Gaps = 20/177 (11%)

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           +NE QAL    N+      E  W        +YL+   GLR +EAL+LTP +       +
Sbjct: 118 MNELQALLYELNL----PAEVNW-----DWFIYLISKTGLRFAEALALTPADFDYKNQQI 168

Query: 189 RIQGKGD-KIRIVPLLP-----SVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLN 239
            I    + K +     P     S RK  ++   L  F       +   P+F     K  N
Sbjct: 169 NINKSWNYKFKDYGFQPTKNKSSNRKIFVDDSTLKAFKKLTKEKDPDQPIFVNQNQKIFN 228

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
             V  R +  L R+  +P + + H LRH+ A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 229 STVNSR-LATLCRHANIP-TISIHGLRHTHASLLLFQGVSVLSVSRRLGHANVTTTQ 283


>gi|296103209|ref|YP_003613355.1| putative bacteriophage integrase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295057668|gb|ADF62406.1| putative bacteriophage integrase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 349

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 28/46 (60%)

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LP     H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++
Sbjct: 274 LPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319


>gi|261878741|ref|ZP_06005168.1| integrase [Prevotella bergensis DSM 17361]
 gi|270334751|gb|EFA45537.1| integrase [Prevotella bergensis DSM 17361]
          Length = 293

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 9/161 (5%)

Query: 158 AILYLLYGC--GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVRKAIL 211
           A L  ++ C  GL IS+  +L  ++I    D Q  +R + +  K+  IVPL P + + I+
Sbjct: 92  ARLMFVFSCFTGLAISDMENLEYKHIQTAADGQMYIRKERQKTKVEFIVPLHP-IAETII 150

Query: 212 EYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
            +    P   ++   ++      +  +  +  V    +  + +  G+    + H  RH+F
Sbjct: 151 SHCRKEPERSEVQQTVKEKGDHLVFHRDCSRSVMDAKLSIVGKACGIRQRLSFHMARHTF 210

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            T  LS G  + SI  ++GH  +S+TQ+Y  V  +   + M
Sbjct: 211 GTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDRKISEDM 251


>gi|229119430|ref|ZP_04248727.1| Tyrosine recombinase [Bacillus cereus Rock1-3]
 gi|228663999|gb|EEL19543.1| Tyrosine recombinase [Bacillus cereus Rock1-3]
          Length = 223

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 8/152 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AIL L  G G+R+SE   L  ++I   +  + +  KG+K   V + P     + +Y 
Sbjct: 59  RDVAILSLFLGSGIRVSELADLRMEDINLKERLIDVIRKGNKEDSVWITPIALNDLEKYM 118

Query: 215 DL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           ++      P     N+ L  ++    +PL+    Q  + +  +  G  +S   H LRH+ 
Sbjct: 119 EIRDNKYAPGKELKNVFLSRYKHT-AQPLSVRAIQDIVEKYTKAYGKRMS--PHKLRHTL 175

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           A  L     D   +   LGH    T  +YT +
Sbjct: 176 ANKLYMEEKDSLQVMQQLGHTSQDTALLYTQL 207


>gi|328958833|ref|YP_004373744.1| integrase/recombinase [Carnobacterium sp. 17-4]
 gi|328675157|gb|AEB31202.1| integrase/recombinase [Carnobacterium sp. 17-4]
          Length = 183

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 68/152 (44%), Gaps = 11/152 (7%)

Query: 153 DARNSAILYLL-YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           +A     L+L+    GLR+S+ + L  Q+++  ++   ++ K  K RI+  L S++  I 
Sbjct: 26  NADRDVFLFLIGINSGLRMSDIVKLKKQDLISSKNPRIVEKKTGKTRIL-YLSSLQDLIQ 84

Query: 212 EYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           EY  DL   D        LF   +G  L      +  +++ + LG       HTLR +F 
Sbjct: 85  EYTKDLAADDY-------LFPSTKGGHLEVNTVYQMFQKVAQLLGRD-DIGTHTLRKTFG 136

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            H      D+ ++  I GH     T+ Y  +N
Sbjct: 137 YHYYKKTKDVATLMEIFGHSSEKITKRYIGIN 168


>gi|301311134|ref|ZP_07217062.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300830708|gb|EFK61350.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 310

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           F R +R L+   G+    T++T+RHSFA  L      +  I  +LGH  + TTQIY
Sbjct: 227 FNRNLRMLKEVAGIASDVTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIY 282


>gi|291539569|emb|CBL12680.1| Site-specific recombinase XerD [Roseburia intestinalis XB6B4]
          Length = 267

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 43/235 (18%)

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN-----------------------EK 132
           + F++YL  ++IT +  +L    L++ +  P  +N                       + 
Sbjct: 29  EKFVRYLNGKEITKDRTMLYREKLREEDLSPATINLYVIAVNRYLRYLECGQASIKTLKV 88

Query: 133 QALTLVDNVLLHTSHETKWIDARNSA------ILYLLYGCGLRISEALSLTPQNIMDDQS 186
           Q    V+NV+    ++     A++S       I+  L   G+R+SE   +T + +  +  
Sbjct: 89  QKKRSVENVISRKEYQELLNYAKSSGRKKYYYIMRTLALTGIRVSELQYITVETL--ETG 146

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQR 245
            +++  KG KIR V  LP V   I E    C  +  N  I   +FRG  G P+N     +
Sbjct: 147 RVQVYNKG-KIRDV-YLPDV--LIRELKKFCREEKENDGI---IFRGRGGDPINRITVYK 199

Query: 246 YIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            I  L   +G+       H+ RH FA   +   G+L     +LGH  + TT+IYT
Sbjct: 200 MIAYLGDMVGIKKEKVHPHSFRHFFAISYMERYGNL---ADLLGHTSIETTRIYT 251


>gi|282859345|ref|ZP_06268455.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282587877|gb|EFB93072.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 355

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 24/155 (15%)

Query: 162 LLYGC--GLRISEALSLT---PQNIMDDQSTLRIQGKGDKIR-IVPLLPSVR-------- 207
            ++ C  GL I++   LT    ++  D Q  +R + +  K+  IVPL P  +        
Sbjct: 159 FIFSCFTGLAITDMEHLTFGYIKSAADGQMYIRKERQKTKMEFIVPLHPIAKTIIEQQRQ 218

Query: 208 -KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            KA+ E  +    D  L  Q    R +    L+          + +  G+    + H  R
Sbjct: 219 LKAVKEEGNNTDMDNRLIFQPCCSRSVLAAKLSI---------VGKACGIKQRLSYHMAR 269

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H+F T  LS G  + SI  ++GH  +++TQIY  V
Sbjct: 270 HTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQV 304


>gi|251811286|ref|ZP_04825759.1| integrase family protein [Staphylococcus epidermidis BCM-HMP0060]
 gi|293367657|ref|ZP_06614309.1| prophage L54a protein [Staphylococcus epidermidis M23864:W2(grey)]
 gi|251805153|gb|EES57810.1| integrase family protein [Staphylococcus epidermidis BCM-HMP0060]
 gi|291318227|gb|EFE58621.1| prophage L54a protein [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329736102|gb|EGG72375.1| site-specific recombinase, phage integrase family [Staphylococcus
           epidermidis VCU045]
          Length = 194

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 25/168 (14%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQG------KGDKI------------RIVPLLPS--- 205
           G+RI E L++ P+NI      L I G      +G+ +            R + L      
Sbjct: 19  GMRIGELLAIQPENIDFKNKKLIIDGTIHWRKEGNNLGFKDTTKTALSYRTISLTTRSCD 78

Query: 206 -VRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
            +RK +LE      +  N+ +    +F   +G P++     R I+   + +G+    T+H
Sbjct: 79  ILRKVMLENKKAFQWK-NMYVDRDFIFTNHKGNPISLTSINRNIQIAAKNVGIKKHITSH 137

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           T+RHS  + L   G  LR+I   +GH    TT QIY++V  +   D M
Sbjct: 138 TMRHSHISLLSQLGISLRAIMDRVGHTDHKTTLQIYSHVTEQMDKDMM 185


>gi|237717515|ref|ZP_04547996.1| phage integrase [Bacteroides sp. 2_2_4]
 gi|229453184|gb|EEO58975.1| phage integrase [Bacteroides sp. 2_2_4]
          Length = 316

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 16/156 (10%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLC 217
           IL + Y  GLRISE LS+  ++I  ++  + I   K  K R+V     V K + E     
Sbjct: 136 ILMITYMLGLRISETLSIKIKDIDLEKMYVHIHCSKFYKSRLVTFNEQVSKLMQEILQWR 195

Query: 218 PFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA------HTLRHSFA 270
              +   ++   +F  ++GKP+N     +    +R+  GL            H LRH+FA
Sbjct: 196 STQMYPMVEDAYVFINLKGKPVNFVSLHQIFTTIRKNAGLYFPDRGRHQPRIHDLRHTFA 255

Query: 271 THLLSN----GGDLRS----IQSILGHFRLSTTQIY 298
            ++L+N    G +++     + + LGH  +S T +Y
Sbjct: 256 VNVLTNWYKSGKNVQDLLPKLSTYLGHLNVSFTSVY 291


>gi|323974580|gb|EGB69703.1| phage integrase [Escherichia coli TW10509]
          Length = 166

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 30/44 (68%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T HT RHS+A  +L  G  L+ +QS++GH  +S+T++YT V
Sbjct: 95  VPVTPHTFRHSYAMLMLYAGIPLKVLQSLMGHKSISSTEVYTKV 138


>gi|327197974|ref|YP_004306291.1| putative site specific recombinase [Lactococcus phage 949]
 gi|306009294|gb|ADM73689.1| putative site specific recombinase [Lactococcus phage 949]
          Length = 330

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 3/64 (4%)

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLST 294
           K ++P +F  +  Q  ++LG  +    H LR S AT+ ++ +G D++++Q +LGH   ST
Sbjct: 256 KQISPDMFNAWCTQWGKFLGKKVH--PHLLRSSRATNSVVEDGKDIKAVQQLLGHNSSST 313

Query: 295 TQIY 298
           T+IY
Sbjct: 314 TEIY 317


>gi|290956612|ref|YP_003487794.1| mobile element protein [Streptomyces scabiei 87.22]
 gi|260646138|emb|CBG69231.1| putative mobile element protein [Streptomyces scabiei 87.22]
          Length = 491

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 88/228 (38%), Gaps = 65/228 (28%)

Query: 107 ITTESNILNM-------RNLKKSNSLPRALNEKQALTLVDNV----LLH---TSHETKWI 152
           +T    I+N+        N  K+N LP+   E+ A  +   +    LL+    +    WI
Sbjct: 199 VTRNDRIMNLVMGYAIRHNYLKANPLPKGKGERTAPKVAQAIDKRCLLNRDLVAQMLDWI 258

Query: 153 DARNS------AILYLLYGCGLRISEALSL----------------------------TP 178
             R        A    LY  GLR  EA++L                            T 
Sbjct: 259 GGRPRRGLLYRAFFATLYYAGLRPEEAVALRVGDATLPETGWGEFLVHEAQPEVGSQWTD 318

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVR---KAILEYYDLCPFDLNLNIQLPLFRGIRG 235
              + ++  L+ +G+GD  R+VP+ PS+    + I++ YDL P DL       LF G +G
Sbjct: 319 TGDVHEERDLKGRGEGD-TRMVPIHPSLVALLREIIKEYDLKPADL-------LFPGEKG 370

Query: 236 KPLNPGVFQRYIRQLR------RYLGLPLSTTAHTLRHSFATHLLSNG 277
             L   VF+R   + R           P     + LRH+  T  L+NG
Sbjct: 371 GMLAGSVFRRVWAKARDEILDEHEFKSPTGKRVYDLRHTCLTTWLNNG 418


>gi|224502928|ref|ZP_03671235.1| Tn554-related, transposase A [Listeria monocytogenes FSL R2-561]
          Length = 307

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 94/228 (41%), Gaps = 47/228 (20%)

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           + +   K FL ++ K K  +ES IL ++  K           + AL    NV        
Sbjct: 78  KGIKQYKGFLHHITKNKRVSES-ILKLKEPKSRVETIPDFTLQAALGATTNV-------- 128

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-----PLLP 204
                R+  +L LLY  GLRI E LSL  ++I+ D        +G ++R+V     P   
Sbjct: 129 -----RDFFLLRLLYETGLRIGEILSLHKEDILFDLH------QGHRVRLVYRKEQPNDS 177

Query: 205 SVRKAILEYY------DLCPFD------LNLNIQLPLFRGIRGK----PLNPGVFQRYIR 248
             +  + E +      DL  FD      L+ +    LF  ++GK    PLN   +Q  + 
Sbjct: 178 RQKTGLREVHISANLIDL--FDDYMYSILDFDRSDSLFVKVKGKSQGLPLN---YQDVMA 232

Query: 249 QLRRYLG-LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             +R  G +      H  RH+ AT       D++ +Q  LGH  + TT
Sbjct: 233 TFKRIEGKIEYHLHPHLYRHTHATKYYEQTKDIKIVQERLGHKHIQTT 280


>gi|145595427|ref|YP_001159724.1| phage integrase family protein [Salinispora tropica CNB-440]
 gi|145304764|gb|ABP55346.1| phage integrase family protein [Salinispora tropica CNB-440]
          Length = 147

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 30/53 (56%)

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           R  LGL      H+LR S+ THL+  G D   +Q  +GH   STT IYT V+S
Sbjct: 69  RDALGLDAGLDFHSLRRSYVTHLIEAGWDPLFVQQEVGHEHASTTAIYTCVSS 121


>gi|38637747|ref|NP_942721.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527085|gb|AAP85835.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 87

 Score = 45.1 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 30/42 (71%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           + H++RHS ATHLL +G D+ ++++ LGH  + TT +Y  ++
Sbjct: 10  SPHSIRHSTATHLLRSGVDINTVRAWLGHVSIDTTNVYAEID 51


>gi|291558084|emb|CBL35201.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a]
          Length = 476

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 114/263 (43%), Gaps = 39/263 (14%)

Query: 65  QLSYTEIRAFISKRRT--QKIGDRSLKRSLS-----GIKSFLKYLKKRKITTESNILNMR 117
           +LS ++++ F +K +T  +K+  ++  + LS     GI +  +   +R +  +  ++   
Sbjct: 117 RLSQSDLQQFYAKEKTDGRKLHAKTYGKGLSDRTIRGIHANCRTALQRAV--QEGLIRTN 174

Query: 118 NLKKSNSLPRALNEKQALTLVDNV-LLHTSHETKWIDARNSAILYLL-YGCGLRISEALS 175
                   P+   E Q LT  + +  LH + E  + +      L+LL  G G+R  E L+
Sbjct: 175 PAVGCKLPPKKAREMQVLTQNEIIRFLHQAKEEGYYE------LFLLELGTGMRRGEILA 228

Query: 176 LTPQNIMDDQSTLRIQGK---------------GDKIRIVPLLPSVRKAILEYYDLCPFD 220
           L   ++      LRI  +                  IR V L PS+ K +  Y +    D
Sbjct: 229 LKWSDLNFATGELRIGRQVYIIKAEVIISAPKTKASIRTVILPPSLIKTLAVYKET--VD 286

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
                  P   G   +P NP   ++ ++ +    G       H LRH+FAT  L +G D+
Sbjct: 287 SEWMFPSPTDNG---RPRNPSSVRKRLQLILERAGCK-KVRFHDLRHTFATMALEHGMDV 342

Query: 281 RSIQSILGHFRLSTT-QIYTNVN 302
           +++ + +GH   +TT  IY+++ 
Sbjct: 343 KTLSATIGHVSSATTLDIYSHIT 365


>gi|281425545|ref|ZP_06256458.1| putative integrase [Prevotella oris F0302]
 gi|281400351|gb|EFB31182.1| putative integrase [Prevotella oris F0302]
          Length = 422

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 73/165 (44%), Gaps = 28/165 (16%)

Query: 167 GLRISEALSLTPQNIM---DDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY------DL 216
           GL   +   L P++I+   D    +RI+  K D   I+PLLP + K IL  Y      D 
Sbjct: 257 GLARVDMQRLKPKHIIYNADGTEEIRIKRQKTDVEAIIPLLP-ITKQILSLYIKDKKSDE 315

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LS 275
             F  NL I     R      +N G   R  + L          T H  RH+F+T + LS
Sbjct: 316 LIFP-NLTI-----RKASLACVNIGQICRIEKGL----------TFHMARHTFSTTICLS 359

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           NG  + ++  +LGH  + TTQIY  +      + M  + D+ H +
Sbjct: 360 NGISMETLSKMLGHSNIGTTQIYGKITDHKIQEDMTALTDREHSA 404


>gi|269202441|ref|YP_003281710.1| pathogenicity island protein, integrase [Staphylococcus aureus
           subsp. aureus ED98]
 gi|262074731|gb|ACY10704.1| pathogenicity island protein, integrase [Staphylococcus aureus
           subsp. aureus ED98]
          Length = 406

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 30/171 (17%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGK---------GDKIRIVPLLPS------------ 205
           G+RI E L++  + I  D  +L I G          G  ++      S            
Sbjct: 230 GMRIGEMLAIKNEVIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSC 289

Query: 206 --VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
             ++KAILE      ++   LN N    +F   +G P+    F + +R+  + +G+    
Sbjct: 290 EILKKAILENKKDSKWNDGYLNRNF---VFTNHKGNPMQTERFNKILRKSAKDVGIEKEI 346

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           ++H LRHS  + L   G  L++I   +GH    TT  IY++V  +   D M
Sbjct: 347 SSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMM 397


>gi|302035718|ref|YP_003796040.1| putative phage integrase [Candidatus Nitrospira defluvii]
 gi|300603782|emb|CBK40114.1| putative Phage integrase [Candidatus Nitrospira defluvii]
          Length = 346

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           H LRH+FAT L   G DL  +Q +LGH   + TQ Y + + ++  + ++ I ++ HP I+
Sbjct: 271 HDLRHTFATRLAQAGVDLYKVQRLLGHKSAAMTQRYAHHSPESLREGVL-ILERIHPEIS 329

Query: 323 Q 323
           Q
Sbjct: 330 Q 330


>gi|299822665|ref|ZP_07054551.1| tyrosine recombinase XerC [Listeria grayi DSM 20601]
 gi|299816194|gb|EFI83432.1| tyrosine recombinase XerC [Listeria grayi DSM 20601]
          Length = 209

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 11/178 (6%)

Query: 126 PRALNEKQ--ALTLVDNVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           P  + ++Q  ALT  + + L  S+ T+ +   R    + LL   G+R +E L++   +I 
Sbjct: 6   PPKIEQRQVNALTYEEVIKLLNSYTTQSFKQLRGKTAIALLADTGVRSNELLNIKLDHIQ 65

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKP 237
            D S    + KG+K R V  L ++   IL  Y     D       ++ +        G+ 
Sbjct: 66  QD-SIFIEKAKGNKQRTV-YLSALSTQILSKYLRRRQDYFTDHALIDEEYLFVSSTVGRQ 123

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           L      + I+   +  GL      H  RH +A   LSNG DL  +Q +LGH  +STT
Sbjct: 124 LTYAGLYQIIKFAEKKAGLK-DVRPHKFRHFYAVQSLSNGLDLFFVQRVLGHKSVSTT 180


>gi|168186629|ref|ZP_02621264.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Clostridium botulinum C str. Eklund]
 gi|169295397|gb|EDS77530.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Clostridium botulinum C str. Eklund]
          Length = 180

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 8/152 (5%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK-GDKIRIVPLLPSVRKAIL 211
           + RN+ +  L   CGLRIS+ L+L  +++    +   IQ K G++I IV L   ++K I 
Sbjct: 22  NERNAIMFGLGVFCGLRISDILNLKVKDVRRKWNLKIIQQKTGNRIEIV-LNRELKKMID 80

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
            Y +    D+     L   R  + KP++     R ++ + +   L      H+ R +FA 
Sbjct: 81  SYTE----DMKETDYLIKSRTGKNKPISRTQAYRIMKDIEQEFELD-KMGCHSTRKTFAY 135

Query: 272 HL-LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            L + N  D+  +Q  LGH   +TT  Y  V+
Sbjct: 136 RLYIDNKKDIGLVQKALGHQSSATTLTYIGVD 167


>gi|290958002|ref|YP_003489184.1| integrase [Streptomyces scabiei 87.22]
 gi|260647528|emb|CBG70633.1| putative integrase [Streptomyces scabiei 87.22]
          Length = 405

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +F   +GKPL+P    R  R+L    GL  +   H LRHS AT LL  G DL  I+ +LG
Sbjct: 300 VFTTPKGKPLDPTNLTRRFRRLLHSSGL-RTIRFHDLRHSTATLLLEQGIDLVVIKELLG 358

Query: 289 HFRLSTTQ-IYTNV 301
           H  +  T  +Y +V
Sbjct: 359 HAHIGVTAGVYAHV 372


>gi|325857603|ref|ZP_08172539.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483109|gb|EGC86091.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 435

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 17/183 (9%)

Query: 158 AILYLLYGC--GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVRKAIL 211
           A L  ++ C  GL I++  +L  ++I    D Q  +R + +  K+  +VPL P     I 
Sbjct: 238 ARLMFIFSCFTGLAIADMETLQYKHIQTAADGQKYIRKERQKTKVEFVVPLHPIAETIIS 297

Query: 212 EYYDLCPFDLNL--NIQLPLFRGIRGKPLNP----GVFQRYIRQLRRYLGLPLSTTAHTL 265
                   DL    + Q    +G  G   +P     V    +  + +  G+    + H  
Sbjct: 298 HCRKANHNDLTTGQDEQTMKEKG-DGFVFHPDSSRSVMNSKLYIVGKACGISQRLSFHMA 356

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           RH+F T  LS G  + SI  ++GH  +S+TQIY  V        + E  D+    ++ K+
Sbjct: 357 RHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDCK----ISEDMDRLIAKLSSKE 412

Query: 326 KKN 328
           KKN
Sbjct: 413 KKN 415


>gi|322831282|ref|YP_004211309.1| integrase family protein [Rahnella sp. Y9602]
 gi|321166483|gb|ADW72182.1| integrase family protein [Rahnella sp. Y9602]
          Length = 254

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 27/45 (60%)

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           LP     H LRH+FA+H + NGG++  +Q +LGH  +  T  Y +
Sbjct: 191 LPAGQLTHVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAH 235


>gi|296162871|ref|ZP_06845652.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886908|gb|EFG66745.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 329

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 105/252 (41%), Gaps = 34/252 (13%)

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           A+    R +    R+  R L  +++FL++L++ +  TE    ++         P   +E+
Sbjct: 59  AWARSDRREGNDPRTWARRLKRLRTFLRWLQQFEPRTEVPDDSIFGRLPQRQAPHIFSEE 118

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYG----CGLRISEALSLTPQNI--MDDQS 186
           +   +VD  LL  S       A   A+   L+G     GLRI EAL+L   ++   D   
Sbjct: 119 E---IVD--LLARSRRLGPSPALRGAVYETLFGLIAATGLRIGEALALCNDDVDLKDGML 173

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGK----PLN 239
           T+R + K  K R VP+ PS    +  Y      DL         P F G RG+    PL 
Sbjct: 174 TIR-RTKFGKSRQVPMHPSTVGCLRRY--CLQRDLTEGTPAEDGPFFVGTRGRRRGLPLG 230

Query: 240 PGVFQRYIRQLRRYLGLP-----LSTTAHTLRHSFATHLL----SNGGDLR----SIQSI 286
                R  R L + LG        +   H LRH+F    +    ++G D+     S+ + 
Sbjct: 231 VRQVHRVFRDLSQQLGWANRGAHHAPRIHDLRHTFVVRRIVEWQAHGVDIDQAMLSLSTY 290

Query: 287 LGHFRLSTTQIY 298
           +GH  ++ T  Y
Sbjct: 291 VGHTMVTNTYWY 302


>gi|262383616|ref|ZP_06076752.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262294514|gb|EEY82446.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 383

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 14/146 (9%)

Query: 163 LYGC--GLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           L+ C   LRIS+ LSL    I+D  +  + +     K +   ++P   +A          
Sbjct: 236 LFSCLTSLRISDILSLQWHEIIDFAAGGKCVHTITQKTKTEDIIPISDEA---------- 285

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
            L L    P   G+  K L     Q+ +++  R  G+  + T H+ R ++AT   + G D
Sbjct: 286 -LQLIGYSPEKTGLVFKGLKRSWTQQPMKEWIREAGITKNITFHSYRRTYATLQGAAGTD 344

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKN 305
           +R+IQS + H  ++TTQ Y  V   N
Sbjct: 345 IRTIQSNMAHKSITTTQRYMKVVDSN 370


>gi|255015298|ref|ZP_05287424.1| integrase [Bacteroides sp. 2_1_7]
          Length = 310

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           F R ++ L++  G+    T++T+RHSFA  L      +  I  +LGH  + TTQIY
Sbjct: 227 FNRNLKALKKAAGIASDVTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIY 282


>gi|255012552|ref|ZP_05284678.1| integrase [Bacteroides sp. 2_1_7]
 gi|256839009|ref|ZP_05544519.1| integrase [Parabacteroides sp. D13]
 gi|298374561|ref|ZP_06984519.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           3_1_19]
 gi|301308234|ref|ZP_07214188.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|256739928|gb|EEU53252.1| integrase [Parabacteroides sp. D13]
 gi|298268929|gb|EFI10584.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           3_1_19]
 gi|300833704|gb|EFK64320.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 310

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           G F R ++ L   +G+    T++T+RHSFAT L      +  I  +LGH  + TTQIY
Sbjct: 225 GGFNRRLKILSESIGIHTRVTSYTIRHSFATTLKEQNVPIEMISELLGHKSIKTTQIY 282


>gi|150399016|ref|YP_001322783.1| phage integrase family protein [Methanococcus vannielii SB]
 gi|150011719|gb|ABR54171.1| phage integrase family protein [Methanococcus vannielii SB]
          Length = 326

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 63/298 (21%), Positives = 124/298 (41%), Gaps = 27/298 (9%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL--AFYTEEKITIQTIRQLSYTEIRAF 74
           E  N ++    +R    +   + + D  +  +FL  ++YT  K T  T+    Y     +
Sbjct: 26  EIDNLVEEFSAQRRFDGIKDATIDNDNDRIKVFLRYSYYTLNK-TPDTLTDKDYFAFFTY 84

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSF---LKYLKKRKITTESNI---LNMRNLKKSNSLPRA 128
           +  +R +   D ++ +    +K F   +KY       TES      +  ++K  +++   
Sbjct: 85  L--KRERNCSDNTVNKYFKLLKVFYRLMKYSNFNDFVTESKERKRFSRFDIKHYDAI--- 139

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
             ++  L  +   LL  + +TK    R++  + LL+  G R+SE  +LT      ++   
Sbjct: 140 --DEDTLNTILKKLLEANGDTK---IRDATFMRLLWDTGCRVSEVCNLTYSASDLNKGVF 194

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN----PGVFQ 244
           ++     K     +       +L Y+     D     +  LF+  RG  +N       F+
Sbjct: 195 KLTNTKTKQDRTVVCSKETLKLLNYF--LQHDSKNAPEDYLFKSGRGAKMNKYTLSARFR 252

Query: 245 RYIRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             + +L++   +P +     H+LRH  A  LL  G  +  ++  LGH  + TT IY++
Sbjct: 253 DIVVELKKNGTIPKNRWLVIHSLRHGRAVDLLGKGVPIDVVKEYLGHTSIETTLIYSH 310


>gi|29376760|ref|NP_815914.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|227517099|ref|ZP_03947148.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX0104]
 gi|227555253|ref|ZP_03985300.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
 gi|255975282|ref|ZP_05425868.1| integrase [Enterococcus faecalis T2]
 gi|307285277|ref|ZP_07565421.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|29344225|gb|AAO81984.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
 gi|227075470|gb|EEI13433.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX0104]
 gi|227175635|gb|EEI56607.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
 gi|255968154|gb|EET98776.1| integrase [Enterococcus faecalis T2]
 gi|306502854|gb|EFM72116.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|315573394|gb|EFU85585.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309B]
 gi|315581045|gb|EFU93236.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309A]
          Length = 369

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 28/154 (18%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           GLRI E  +L  ++I   + T+ ++    ++ +     S +     YYD C   +N    
Sbjct: 204 GLRIGELAALRWEDINFKKDTIHVKHTFQRVSVSSFGESTQL----YYD-CTKTINSERI 258

Query: 227 LPLFRGIRG-------------------KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +P+   ++                    KP  P +   Y  +LR  + L      H LRH
Sbjct: 259 IPMSNTVKNALKCQKEHSQGKFVFSRNNKPCEPRLLTYYFHKLRDKVQLD-KVHFHQLRH 317

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +FAT  L +  D+ S+ ++LGH   S+TQ+  ++
Sbjct: 318 TFATRCLESTSDIVSVSALLGH---SSTQMTLDI 348


>gi|317181437|dbj|BAJ59221.1| integrase/recombinase [Helicobacter pylori F57]
          Length = 286

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 121/270 (44%), Gaps = 33/270 (12%)

Query: 48  IFLAF-YTEEKITIQTIRQLSYTEIRAFI---SKRRTQKIGDRSLKRSLSGIKSFLKYL- 102
           +FL F Y + +I ++++  L+  ++  F+   +K R       S+ + +  ++ F  YL 
Sbjct: 5   LFLFFEYFDNRIKLKSLHNLAEEQVIDFLFGLAKNRK----PSSMAKYVMCLRQFFDYLD 60

Query: 103 KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
           +KR  + E  + N+   KK   LP+ LN+      +  +L +  H     +  N  IL L
Sbjct: 61  RKRNYSFEFELKNLSFTKKETHLPKHLNKNDFKAFIQALLKY--HPKTSFEKCNQCILLL 118

Query: 163 LYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           +   GLR  EAL L  +NI   ++   L I+GK +K R       + K  L+     P +
Sbjct: 119 IALGGLRKFEALDLELKNIALENNHYRLLIKGKNNKERY----AYIEKEFLQ----VPLN 170

Query: 221 --LNLNIQLPLFRG--IRGKPLNPGV-----FQRYIRQLRRYLGLPLSTTA---HTLRHS 268
             L+   +L  F+G  +  K  N         + +I ++ +   + + +     H  RHS
Sbjct: 171 AWLSDTKRLKSFKGRFVFKKAKNNTTQKTCSLKGFIVKIFKLSNIDVKSYGLGLHLFRHS 230

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           FAT +     DL      LGH  L +T+IY
Sbjct: 231 FATFIYDEAQDLVLTSRALGHSSLLSTKIY 260


>gi|311234897|gb|ADP87751.1| integrase family protein [Desulfovibrio vulgaris RCH1]
          Length = 457

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 64/148 (43%), Gaps = 24/148 (16%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQG-------KGDKIRIVPLLPSVRKAILEYYDLCPF 219
           G+R  E + L  ++I  D  T+RI         KG + RIV       ++I         
Sbjct: 298 GMRAGELVRLRTEDIDVDHGTIRIYSGSDAGITKGGRTRIVHAGHLFAESITM------- 350

Query: 220 DLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-------HTLRHSFA 270
            L   +  P  LF G  G   N     R +  +   LGL    T        HTLRH++A
Sbjct: 351 -LRRRVGSPGLLFPGRGGAVRNTTAVSRAMAHICATLGLNADVTDDRNRIVWHTLRHTYA 409

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIY 298
           T +L  G D+ +++ +LGH  ++ T+ Y
Sbjct: 410 TRMLEAGIDIYTLKELLGHSSVAVTERY 437


>gi|188994781|ref|YP_001929033.1| tyrosine type site-specific recombinase [Porphyromonas gingivalis
           ATCC 33277]
 gi|188594461|dbj|BAG33436.1| tyrosine type site-specific recombinase [Porphyromonas gingivalis
           ATCC 33277]
          Length = 420

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 26/143 (18%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           GLR  +   L  + I  D    R+     K + V  +P   +A+     LC         
Sbjct: 273 GLRHCDIQKLKWKEINMDGEQPRLHFTQKKTKGVEYMPISEQAL----QLC--------- 319

Query: 227 LPLFRGIRGKPL--------NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
                G RG P         +P    + +++     G+  S + H  RHS+AT   ++  
Sbjct: 320 -----GERGLPEQLVFEDLPDPSWISKPLKRWIEAAGIKKSISFHCFRHSYATLQFASST 374

Query: 279 DLRSIQSILGHFRLSTTQIYTNV 301
           D+ ++  +LGH  + TTQIY  V
Sbjct: 375 DIYTVSKMLGHTNVKTTQIYAKV 397


>gi|160938914|ref|ZP_02086265.1| hypothetical protein CLOBOL_03808 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437877|gb|EDP15637.1| hypothetical protein CLOBOL_03808 [Clostridium bolteae ATCC
           BAA-613]
          Length = 350

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 127/303 (41%), Gaps = 44/303 (14%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFL-------AFYTEEKITIQTIRQLSYTEIRAFIS--- 76
           IE   S  T  +Y  D   F  FL       A  T + I +  + QLS T+   ++    
Sbjct: 36  IEPRTSSRTRIAYAYDLHVFFDFLHKENPALARITVQDIKLDQLDQLSVTDFEEYMEYLK 95

Query: 77  ---KRRTQKI--GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
                + Q++   +R + R +S +KSF  Y   R    ++N   +  L K       L+E
Sbjct: 96  YRFNDKNQEVMNKERGIMRKISSLKSFYNYYY-RNERIKNNPAALVQLPK-------LHE 147

Query: 132 KQALTL-VDNVLL---HTSHETKWID----------ARNSAILYLLYGCGLRISEALSLT 177
           K+ + L VD V L         K  D           R+ A+L LL G G+R+SE + L 
Sbjct: 148 KEIIRLDVDEVALLLDEVEQGDKLTDKQKNYHAKTKTRDLALLTLLLGTGIRVSECVGLN 207

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGI 233
             +I      +RI  KG K   V     V  A+L+Y +    + P       +  LF  +
Sbjct: 208 ISDIDFKNGGIRIYRKGGKEVTVYFGTEVEDALLDYLEERDRIIP---EQGHEDALFLSL 264

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           + + +     +  +++  R +      T H LR ++ T+L    GD+  +  +LGH  ++
Sbjct: 265 QRRRMAVRSVENLVKKYARTVAPLKPITPHKLRSTYGTNLYRETGDIYLVADVLGHSDVN 324

Query: 294 TTQ 296
           TT+
Sbjct: 325 TTK 327


>gi|317131465|ref|YP_004090779.1| transcriptional regulator, XRE family [Ethanoligenens harbinense
           YUAN-3]
 gi|315469444|gb|ADU26048.1| transcriptional regulator, XRE family [Ethanoligenens harbinense
           YUAN-3]
          Length = 470

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LF    GKP+NP     ++ +      L    T H LRH+FAT  ++ G D+R++Q+  G
Sbjct: 370 LFVQADGKPINPDTINYWMNRFLEQHQLE-HITPHGLRHTFATLQIAAGVDIRTLQARTG 428

Query: 289 HFRLST-TQIYTNV 301
           H + ST   IY++ 
Sbjct: 429 HAQASTLVNIYSHA 442


>gi|150010374|ref|YP_001305117.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149938798|gb|ABR45495.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 310

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           F R +++L    G+    T++++RHSFAT L   G  +  I  +LGH  + TTQIY
Sbjct: 227 FNRSLKELANACGVTEIVTSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIY 282


>gi|77412941|ref|ZP_00789145.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 515]
 gi|77161081|gb|EAO72188.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 515]
          Length = 373

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 70/158 (44%), Gaps = 20/158 (12%)

Query: 152 IDARNSAILYLL---YGCGLRISEALSLTPQNIMDDQSTLRIQGK--GDK---------- 196
           +D  NS + YLL   +  GLR+ EAL+LT  ++  +   ++   +  GDK          
Sbjct: 186 LDYSNSIVYYLLLVLFKTGLRVGEALALTWDDVNFEDLEIKTYRRFSGDKGTFSPPKTKT 245

Query: 197 -IRIVPLLPSVRKAILEYYDLCPFDLN----LNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            IR +P+  S+   +    D     L     +NI   +F   R    +     + +R + 
Sbjct: 246 SIRTIPISQSLALTLRRLKDDQQVMLKNLKIVNINNQIFYDYRYGVSSNSAINKSLRNVL 305

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
             L +    TA   RH++ ++LL+ G D+  +  ++GH
Sbjct: 306 HLLNIDSKMTAIGARHTYGSYLLAKGVDIWVVARLMGH 343


>gi|325522051|gb|EGD00723.1| phage integrase family protein [Burkholderia sp. TJI49]
          Length = 311

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 124/310 (40%), Gaps = 65/310 (20%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            LS LT      D   +  FL   T  +  +   R     E R F     T  +  RS  
Sbjct: 3   ALSSLTTD----DAIAYRSFLRRPTPRERWVGPSRPRQSVEWRPF-----TGPLSARSAA 53

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMR---NLKKSN-SLPRALNEKQAL---TLVDNVL 142
            +L+ + +  ++L +++    +    ++    ++++   + R  +E + L   TL D   
Sbjct: 54  YALNVLSALFRWLVEQRYVLANPFAGVKIKSQVQRAGLDVSRGFSEGEWLLIRTLADG-- 111

Query: 143 LHTSHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDDQST---LRIQGKGDK 196
           L  S+   W +A    + +LL   Y  GLR SE +  T  +I  D+     L + GKG K
Sbjct: 112 LEWSY--GWSEAAAQRLRFLLDFGYATGLRASELVGATLGDIRRDEHGDHWLHVLGKGGK 169

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQ---------- 244
           +  V L P  R A+         D +L +Q  LP+    R  P  P V            
Sbjct: 170 LGKVALPPLARTAL---------DQSL-VQRGLPVT-PTRWNPATPLVASLEEDRAHIES 218

Query: 245 -RYIRQLRRYLGLPLST---------------TAHTLRHSFATHLLSNGGDLRSIQSILG 288
            R  R LRR+  L   T               + H +RH+ A+H L+ G +L  ++  L 
Sbjct: 219 TRLWRVLRRFFVLVADTIQNERPATAEKLRRASPHWMRHTHASHALARGAELIMVRDNLR 278

Query: 289 HFRLSTTQIY 298
           H  +STT  Y
Sbjct: 279 HSSISTTSTY 288


>gi|325851799|ref|ZP_08171001.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325484710|gb|EGC87621.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 377

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP--LLPSVRKAILEYYDLC 217
            ++ C  GL   +  +L P+NI+       I  K  K  +    LL  + K+I+  Y   
Sbjct: 249 FVFSCFTGLAYIDVYNLAPENIVTLNGKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSGK 308

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            +         LF  +  + LN      Y++++    G+  + T H  RH+FAT  LS G
Sbjct: 309 TYR-----DGKLFPMLTNQKLNS-----YLKEIADICGIKKNLTFHLARHTFATMSLSKG 358

Query: 278 GDLRSIQSILGHFRLSTTQ 296
             + S+  +LGH  + TTQ
Sbjct: 359 VPIESVSKMLGHTNIKTTQ 377


>gi|213692228|ref|YP_002322814.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523689|gb|ACJ52436.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 454

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
           +++   PLFR  RG P+     Q   R+    +GLP     H+ RH+ AT +   G    
Sbjct: 357 DIDPDTPLFRSGRGNPIRKETLQNAWRKALERVGLP-RVRVHSARHTAATAMARIGVSDL 415

Query: 282 SIQSILGHFRLSTTQ-IYTNVNS 303
           + ++I+GH  + TT  IYT+V++
Sbjct: 416 ARRAIIGHADIGTTNAIYTHVDA 438


>gi|84387844|ref|ZP_00990859.1| Site-specific recombinase XerD-like [Vibrio splendidus 12B01]
 gi|84377359|gb|EAP94227.1| Site-specific recombinase XerD-like [Vibrio splendidus 12B01]
          Length = 411

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK---NGGDWMMEI 313
           P     H  RHSFAT+L+ NG D+ ++Q ++ H  LS+TQ Y   + +   N  D +  +
Sbjct: 339 PHEVCFHVARHSFATNLIENGVDVLTVQRLMNHKDLSSTQKYVKHSQQKLLNSSDTLSSV 398

Query: 314 YDQTHPSITQK 324
             +  P +  +
Sbjct: 399 LKEQAPRLAHR 409


>gi|134291483|ref|YP_001115252.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134134672|gb|ABO58997.1| phage integrase family protein [Burkholderia vietnamiensis G4]
          Length = 565

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 69/164 (42%), Gaps = 28/164 (17%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKGDKIRIVPLLPSVRKAILEYY- 214
           +L   Y  GLR SE +  T  +I  D+     L + GKG K+  V  LPS+ +  L+ Y 
Sbjct: 383 LLDFGYTTGLRASELVGATLGDIRRDEHGDHWLHVLGKGGKLGKV-ALPSLARTALDQYL 441

Query: 215 ---DLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGLPLST--------- 260
               L       N   PL   +   G  + P   +R  R LRR+  L             
Sbjct: 442 VQRGLPVTPARWNPATPLVASLDEDGTGIEP---RRLWRVLRRFFVLAADAIQDERPATA 498

Query: 261 ------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                 + H +RH+ A+H L+ G +L  ++  L H  +STT  Y
Sbjct: 499 EKLRRASPHWMRHTHASHALARGAELIMVRDNLRHSSISTTSTY 542


>gi|310819252|ref|YP_003951610.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309392324|gb|ADO69783.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 395

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 13/116 (11%)

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQR-YIRQL 250
           KG + R V L  S  +A+  +  LC P+         +F    G+PL  G+ +   +R L
Sbjct: 268 KGGRERTVDLPTSAVEALKAHRHLCGPY---------VFCQTDGRPLTAGMTKHPLLRAL 318

Query: 251 RRY-LGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           RR  +  P  +   H LRH++ +HL   G  L+ IQ ++GH  +  T  Y +++ +
Sbjct: 319 RRAGVSRPEGSIGWHDLRHTYGSHLAMRGVALKVIQELMGHATIEMTMRYAHLSPE 374


>gi|307293735|ref|ZP_07573579.1| integrase family protein [Sphingobium chlorophenolicum L-1]
 gi|306879886|gb|EFN11103.1| integrase family protein [Sphingobium chlorophenolicum L-1]
          Length = 192

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 28/176 (15%)

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE------ALSLTPQNIMDDQSTL-- 188
           ++D+V LH + +      RN  I+ L +  GLR  E      ++ L P   + D   +  
Sbjct: 16  VLDHVALHRNAK------RNRTIVLLSFKAGLRACEIAGLDWSMVLQPNGKLGDHIAIAA 69

Query: 189 RIQGKGDKIRIVPLLPSVRKA--ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           RI   G   R VP+ P ++ A  +L   D            P+ +  RG+ + P     +
Sbjct: 70  RIAKNGSGRR-VPMHPELKAALRVLHVED------GHTRTGPVIKSARGRHMMPRSIVNW 122

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFAT---HLLSN-GGDLRSIQSILGHFRLSTTQIY 298
              +   LGL    ++H+ R +F T    LL   GG LR +Q + GH  L+TT+ Y
Sbjct: 123 FAGVYAQLGLS-GCSSHSGRRTFITTTARLLPKIGGSLRDVQELAGHRALTTTERY 177


>gi|167464469|ref|ZP_02329558.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 379

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 7/107 (6%)

Query: 197 IRIVPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           IR + L     K + ++   CP  +LNL    P  +GI    L P    + + +  +  G
Sbjct: 261 IRTIQLPEPTIKVMKQWKLECPANELNLLFPSPKTKGI----LYPNSLDKQLAKTIKGAG 316

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           +P   T H LRH+FAT LL +  + + +Q +LGH  + TT   Y++V
Sbjct: 317 VP-EITMHGLRHTFATTLLGSNVNPKIVQEMLGHATIKTTMDTYSHV 362


>gi|329964322|ref|ZP_08301403.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328525371|gb|EGF52419.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 412

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 82/191 (42%), Gaps = 24/191 (12%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K+  + PRAL+++    + D  L     E   +       L+  Y  G    + +++TP 
Sbjct: 220 KQKETAPRALSKEDFEKIRDIELTGCRPEHSIV---RDMFLFACYA-GTSYVDVVAITPD 275

Query: 180 NIM-DDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           N+  DD   L ++   GK  ++  V LLP     I +Y D          +  LF     
Sbjct: 276 NLSRDDNGALWLKYRRGKNGQLSRVKLLPEAVALIEKYRD--------ETRATLF----- 322

Query: 236 KPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLS 293
            P+ P    +  +  ++    +    + H  RHSF+T + L NG  + ++  +LGH  + 
Sbjct: 323 -PVIPYQTLKWCLTSIKIKADIKGRLSYHMGRHSFSTLMTLENGVPIETVSKMLGHADIR 381

Query: 294 TTQIYTNVNSK 304
           TTQ+Y  V  K
Sbjct: 382 TTQVYARVTPK 392


>gi|319778991|ref|YP_004129904.1| Type I restriction-modification system, specificity subunit S
           [Taylorella equigenitalis MCE9]
 gi|317109015|gb|ADU91761.1| Type I restriction-modification system, specificity subunit S
           [Taylorella equigenitalis MCE9]
          Length = 165

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 10/154 (6%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI+ +L   G+RI E + L   +I  ++    + GKG K R+V      +  +  Y 
Sbjct: 9   RDLAIIDMLASTGMRIGEMVLLNRNDINFNERECIVFGKGSKERVVYFDARTKIHLQNYL 68

Query: 215 DLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
                D   L ++++ P  R      L  G  +  +R+  + LGL      H  R + AT
Sbjct: 69  KSRKDDNPALFVSLREPYSR------LKIGGIEARLREYGKKLGLQ-KVHPHKFRRTLAT 121

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             +  G  +  +Q +LGH ++ TT  Y  V   N
Sbjct: 122 IAIDKGMPIEQLQQLLGHRKIDTTLQYAMVKQSN 155


>gi|258616081|ref|ZP_05713851.1| phage integrase family site specific recombinase [Enterococcus
           faecium DO]
 gi|293563861|ref|ZP_06678293.1| phage integrase family protein [Enterococcus faecium E1162]
 gi|294623266|ref|ZP_06702131.1| phage integrase family protein [Enterococcus faecium U0317]
 gi|291597294|gb|EFF28480.1| phage integrase family protein [Enterococcus faecium U0317]
 gi|291604190|gb|EFF33692.1| phage integrase family protein [Enterococcus faecium E1162]
          Length = 361

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS- 293
           G+ + P V +   R++     L LS   H+LRH+ AT LL NG  ++ I   LGH R+S 
Sbjct: 277 GELVTPSVVKWNTRRISN--ALSLSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISI 334

Query: 294 TTQIYTNVNSK 304
           T   Y++V  K
Sbjct: 335 TMDTYSHVTDK 345


>gi|124008268|ref|ZP_01692964.1| transposase, putative [Microscilla marina ATCC 23134]
 gi|123986217|gb|EAY26046.1| transposase, putative [Microscilla marina ATCC 23134]
          Length = 415

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 60/116 (51%), Gaps = 14/116 (12%)

Query: 190 IQGKGDKIRIVPLLPSVRKA--ILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
           I  K  K ++V  +P ++ A  IL+ Y  ++  +D  L   LP++        +   + +
Sbjct: 290 IVKKRQKTKVVAKVPIIKSAQDILDRYAHNIGKYDGRL---LPVY-------ASNSAYNK 339

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           YI++L + +G+    ++H+ R +FA  L ++G  L +I+ +LGH     T+ Y  +
Sbjct: 340 YIKKLMKEVGIDKKISSHSARFTFAEILRTSGAALDNIKDVLGHSEKKMTEHYAKM 395


>gi|289642394|ref|ZP_06474541.1| integrase family protein [Frankia symbiont of Datisca glomerata]
 gi|289507826|gb|EFD28778.1| integrase family protein [Frankia symbiont of Datisca glomerata]
          Length = 267

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +F    G PL+P    R    +R   GLP     H LRH+FAT L++ G  +R I  +LG
Sbjct: 146 VFASAIGTPLDPRNVNRRFTAIRTAAGLPW-VRPHDLRHAFATLLVAEGVPMRVIMELLG 204

Query: 289 HFRLS-TTQIYTNV 301
           H  ++ T   Y +V
Sbjct: 205 HSTINLTMNTYAHV 218


>gi|239904755|ref|YP_002951493.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239794618|dbj|BAH73607.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 411

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 25/189 (13%)

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI--SEA 173
           M+  KK+   PR  + +  +  +  ++ H     +W        + + +  G R   SE 
Sbjct: 223 MKGRKKAKEQPR--DVQIGIDDLKRIMDHAESHIRWA-------MEVCFNLGTRPGPSEL 273

Query: 174 LSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
            +L  +++  D  T+RI   K    R VP+  S    + E  D          Q      
Sbjct: 274 FALRWEHVDFDAGTVRIYATKTKTFRTVPVTESFLIRLREMRD--------QSQSGFIVE 325

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
             GKPL     +R         G+ +    + LRH FAT +L+NG DL ++  ++GH   
Sbjct: 326 YEGKPLT--TIRRSFNTACEKAGITVDVRMYDLRHLFATTMLANGADLAAVSKLMGH--- 380

Query: 293 STTQIYTNV 301
           ST ++  +V
Sbjct: 381 STVKMTADV 389


>gi|134098886|ref|YP_001104547.1| phage-related integrase/recombinase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133911509|emb|CAM01622.1| phage-related integrase/recombinase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 374

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 115/313 (36%), Gaps = 71/313 (22%)

Query: 20  NWLQNLEIERGLSKLTLQSY--------------------ECDTRQFLIF---------L 50
            W  +L   R  ++ TL+SY                    EC+ R+F  F          
Sbjct: 79  EWFADLRAIRHCARSTLRSYQDALRSFGDYVTSSAYEWPAECE-RRFGTFPVPVIHDGNA 137

Query: 51  AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE 110
           A + +E     T R  +  E++AF          D+ LK   +G K +L   +   +   
Sbjct: 138 AVHVQEIEASPTKRAFTVEELQAFFDY-----ADDQVLKARGAGRKGWLPAFRDATLFKS 192

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
           +    +R            NE + L  VD       HE K+ +      + + +G   + 
Sbjct: 193 AYAYGLRR-----------NEARMLDTVD--FGRNPHEPKFGE---FGRVRVRFGKAKKG 236

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
           S     T   ++   S L +Q   + +R  PLL     A+     L P +          
Sbjct: 237 SPPKQRTVMTVVPLWSVLVVQEWVETVR--PLL-----AVEGNSALWPSE---------- 279

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
              RG  +      R     R  LGL      H+LR S+AT+L+ +G D   +Q  LGH 
Sbjct: 280 ---RGPRIGLARIDRRFATYRDALGLDPGLDFHSLRRSYATYLIEDGYDPLFVQFQLGHE 336

Query: 291 RLSTTQIYTNVNS 303
             STT +YT V+S
Sbjct: 337 HASTTSLYTCVSS 349


>gi|62768244|gb|AAY00032.1| putative integrase/recombinase [uncultured bacterial symbiont of
           Discodermia dissoluta]
          Length = 410

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 115/292 (39%), Gaps = 24/292 (8%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           ++L   RGL+  T   Y     + L FL F  +  +    +  L   ++  F+ +   + 
Sbjct: 118 EHLGQVRGLATSTQTEYRRVALKLLDFLGFDHDPAV----LTTLDGPQLDKFV-RSLAKG 172

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            G   L+   S ++SFL++L  R   +       +   + +   LPRAL  +  L  +  
Sbjct: 173 CGLSKLQNRASFLRSFLRFLAGRGEIVAGLDQSFDSPRVPRRACLPRALPWESVLAFLAG 232

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +    +        R+ A+  L+   GLR SE  +L   +I    +  R+Q    K+   
Sbjct: 233 ISRDAARGR-----RDYAMFLLIATYGLRSSEIAALLLDDISWRSAQFRVQRP--KVLAP 285

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-------GVFQRYIRQLRRY 253
             LP   +A     D        +    +F  +R +P  P        VF R I      
Sbjct: 286 ITLPLTDEAGAALADYLRHARPQSTHRAVFLTLR-QPTRPLSTRGIQSVFSRRIAA--GD 342

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           L +      H LRHS A HLL     ++ I  +LGH  +++T  Y  V  ++
Sbjct: 343 LSIEGKVGPHILRHSLALHLLRQHTSVKVIGDLLGHRSVASTGGYLRVYEEH 394


>gi|237729900|ref|ZP_04560381.1| phage integrase [Citrobacter sp. 30_2]
 gi|226908506|gb|EEH94424.1| phage integrase [Citrobacter sp. 30_2]
          Length = 398

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 9/110 (8%)

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRG--------IRGKPLNPGVFQRYIRQLRRYL 254
           LP  +        L  + + L  +LP F G        I GKP+   V + + R +RR  
Sbjct: 266 LPETKNGTGRLVHLNDWAIKLIAELPRFGGNIWMFGGKIPGKPVC-NVTKAFRRIIRRAG 324

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
                   HT RHS A  ++S GG L  +Q+ LGH  + ++Q Y +++ +
Sbjct: 325 IYDDEVCIHTCRHSVAALIVSRGGTLYDVQAQLGHRSIQSSQRYAHLHPQ 374


>gi|218129010|ref|ZP_03457814.1| hypothetical protein BACEGG_00583 [Bacteroides eggerthii DSM 20697]
 gi|217988786|gb|EEC55104.1| hypothetical protein BACEGG_00583 [Bacteroides eggerthii DSM 20697]
          Length = 386

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 103/237 (43%), Gaps = 40/237 (16%)

Query: 87  SLKRSLSGIKSFLKYLKKR----------KITTESNILNMRNLKKSNSLPRALNEKQALT 136
           SLK   + I   +K+LKK           K++ E  + ++ ++K+  +   +L  K+ L 
Sbjct: 138 SLKMRANTIIKHMKHLKKAFHQACRKGYLKLSIEE-LFSLCSVKQEKTFKESLTSKELLI 196

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQST----LRI 190
           L     L T  ET   D     +   L+ C  GLR S+  S+   NI   ++     L +
Sbjct: 197 LYQ--YLQTEFET-MADREKEILAGFLFSCLTGLRYSDICSVEYSNIKRIRNKRWLFLTM 253

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRY 246
           +  G K+  VP+        L               + LF   RGK    P N  V  R 
Sbjct: 254 KKTGQKV-FVPIEQMFSGRALGI-------------MRLFHRTRGKLFHMPSN-AVCNRI 298

Query: 247 IRQL-RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           I+++ ++      + + HT RH+ AT LL +   L +I+ ILGH  + TT+ Y ++N
Sbjct: 299 IKRIYKKLFRGKKNISFHTGRHTAATLLLYHNTPLTTIKEILGHTNIRTTETYADIN 355


>gi|189348345|ref|YP_001941541.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
 gi|189338483|dbj|BAG47551.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
          Length = 380

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 30/177 (16%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIM--------DDQSTLRIQGKGDKIRIVPLLPS 205
           AR   +  +LY  GLR +E  S TP   +         ++  + + GKG+K R+VP    
Sbjct: 189 ARCRWLFTVLYLAGLRATEIAS-TPMGAVCCRRDATGAERWWIEVLGKGNKPRLVPATDE 247

Query: 206 VRKAILEY---YDLCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYLGLP--- 257
           +   +  Y   + L P       + PL   + G  KPL+ G   + ++++          
Sbjct: 248 LIAELARYRRAHGLAPSPYQ-GERRPLLLPLIGHEKPLSRGSIHQIVKEVFALAAARLRA 306

Query: 258 ------------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                        S +AH +RH+  +H+     DLR ++  LGH  L+TT +Y +  
Sbjct: 307 RGPEWQAQADQLASASAHWVRHTAGSHMTDRQVDLRFVRDNLGHASLATTSVYLHAE 363


>gi|160893591|ref|ZP_02074375.1| hypothetical protein CLOL250_01145 [Clostridium sp. L2-50]
 gi|156864576|gb|EDO58007.1| hypothetical protein CLOL250_01145 [Clostridium sp. L2-50]
          Length = 658

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 52/277 (18%), Positives = 110/277 (39%), Gaps = 37/277 (13%)

Query: 41  CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLK 100
           C  ++FL++         T+++I +++  +I  +    + ++I   ++ R +  I  F  
Sbjct: 374 CYIKKFLVYFN-------TLESICEITEEQIAEYFKLLQEEEIKAETVNRQIFDIHRFFV 426

Query: 101 YLKKR----KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
           YL  +    +I  + N    +     +   R++ E + + ++  +        K+     
Sbjct: 427 YLNAKGHIKRIIFDPNYYIQKVFPYHHD--RSVQEDEYMEILQKL--------KFFPEVQ 476

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP------SVRKAI 210
             I   L+  GLRISE  +L       D     I+    K++   ++P       + K  
Sbjct: 477 RLIFLNLWATGLRISEVCTLKGGAYYWDGEDAWIKVYQIKMKTEKMIPISLVLYQIMKIY 536

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA---HTLRH 267
           ++ + + P D        LF+   G     G F +  +   +  G+ +S      H  RH
Sbjct: 537 IKKHHIKPTDF-------LFKSKDGGAYRTGTFVKGFKANCKKYGIHISGETFKTHDYRH 589

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + A+     G  +++I+  LGH   + T+ Y +   K
Sbjct: 590 TLASSFYDEGVSIQTIRDYLGHNNENMTKQYIDYMPK 626


>gi|75675027|ref|YP_317448.1| Phage integrase [Nitrobacter winogradskyi Nb-255]
 gi|74419897|gb|ABA04096.1| Phage integrase [Nitrobacter winogradskyi Nb-255]
          Length = 400

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 3/67 (4%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           GKPL     +R+   +R    LP   T H LRH+FA+ L+S G  L  I  +LGH ++ T
Sbjct: 308 GKPLQD--IKRFWEDVRTKAELPAVRT-HDLRHTFASLLVSGGMTLPMIGKLLGHTQVQT 364

Query: 295 TQIYTNV 301
           TQ Y ++
Sbjct: 365 TQRYAHL 371


>gi|310818587|ref|YP_003950945.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309391659|gb|ADO69118.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 395

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 13/116 (11%)

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQR-YIRQL 250
           KG + R V L  S  +A+  +  LC P+         +F    G+PL  G+ +   +R L
Sbjct: 268 KGGRERTVDLPTSTVEALKAHRHLCGPY---------VFCQTDGRPLTAGMTKHPLLRAL 318

Query: 251 RRY-LGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           RR  +  P  +   H LRH++ +HL   G  L+ IQ ++GH  +  T  Y +++ +
Sbjct: 319 RRAGVSRPEGSIGWHDLRHTYGSHLAMRGVALKVIQELMGHATIEMTMRYAHLSPE 374


>gi|295841287|dbj|BAJ07052.1| integrase [uncultured bacterium]
          Length = 276

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 66/153 (43%), Gaps = 37/153 (24%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLC 217
           +L LLYG G+R+ E  SL  ++I  D+  + I+ GKG K R+  L  S+   +    + C
Sbjct: 124 MLKLLYGTGMRLMECYSLRIKDIDFDRMEIIIRSGKGGKDRVTVLPVSLSDTMKAQVEKC 183

Query: 218 PFDLNLN-------IQLP------------------LF--RGIRGKPL---------NPG 241
              L  +       + LP                  +F  +G+   P+         +  
Sbjct: 184 RMLLQRDRANGVPGVYLPNGLERKYPNAGKEWAWFWVFPAKGLSTDPVTKIIRRHHQHEK 243

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
             QR  +Q  R  G+    T HTLRHSFATHLL
Sbjct: 244 ALQRATKQAVRDSGISKPATPHTLRHSFATHLL 276


>gi|260170629|ref|ZP_05757041.1| putative phage integrase/recombinase [Bacteroides sp. D2]
          Length = 368

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 54/249 (21%), Positives = 106/249 (42%), Gaps = 23/249 (9%)

Query: 51  AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE 110
            +YT  +   +   +L+    R FI     +K+   +++  ++ I+ F K++KK     E
Sbjct: 124 VYYTSLRKYFEYANELNMDNCRRFIKSLEEEKLSPATIRLRITAIEKFSKWVKK---PIE 180

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
                M+     N++P    E++   L++ +      +TK ++      + +L   G R+
Sbjct: 181 LKRPRMKRKLDVNNVP---TEEEYNRLLEYL------KTK-LNKDYYFFIKVLGTTGARL 230

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
           SE    T ++I   +  L+  GKG+K R       +++ + +Y         L +     
Sbjct: 231 SEFQQFTWEDIATGEVVLK--GKGNKYRRFFFQKQLQREVKDYIKETGKSGTLAVG---- 284

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGH 289
              R  PL      ++++   ++ G+      AH  RH FA   L    D+  +  +LGH
Sbjct: 285 ---RFGPLTQRGLSQHLKVWGKHCGIDSKKMHAHAFRHFFAKMFLKKTKDVIQLADLLGH 341

Query: 290 FRLSTTQIY 298
             + TT+IY
Sbjct: 342 GSVDTTRIY 350


>gi|254885281|ref|ZP_05257991.1| phage integrase [Bacteroides sp. 4_3_47FAA]
 gi|254838074|gb|EET18383.1| phage integrase [Bacteroides sp. 4_3_47FAA]
          Length = 327

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 127/308 (41%), Gaps = 79/308 (25%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL--SGIKSFLKYL---KKRKITTE-- 110
           + IQT+ +L       +I+ R + K  D S+K+S     I+ F +++   KK ++ TE  
Sbjct: 1   MNIQTVTEL-------YITFRDSLKYRDSSVKKSRIKHTIREFAQFVGVSKKTELITEED 53

Query: 111 -SNILNMRNLKKSNS-------------------------LPRAL------------NEK 132
            ++ LN RN   +N+                         +P+ L            N  
Sbjct: 54  CTSFLNRRNTTVTNAWKKDHCAIKKLFEWACLRGYAPINPVPKQLPVFPDAHPAYIYNND 113

Query: 133 QALTLVDNVLLHTSHETKWIDARN-SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           +   L D  L +   E+   D R    IL   Y  GLRISE L++  ++I   Q  + I+
Sbjct: 114 ELKRLFDASLTYMKAESLVTDPRCIRFILMTTYAMGLRISETLAIRFKHIDRKQQIIHIE 173

Query: 192 -GKGDKIRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLN----PGVFQR 245
             K  K R V     V + I E ++    D   +     +F    GKP+N      +F +
Sbjct: 174 DSKFFKSRYVTYNHQVARLIDEVFEWRKSDSYPMEPDNYVFVSKLGKPVNFVTLHCIFAK 233

Query: 246 -------YIRQLRRYLGLPLSTTAHTLRHSFATHLLSN----GGDLRS----IQSILGHF 290
                  Y  +L+RY         H LRHSFAT++L +    G D+++    +   LGH 
Sbjct: 234 IRKKANLYFPELKRY-----QPRIHDLRHSFATNVLKSWYKEGKDVQALLPKLSIYLGHS 288

Query: 291 RLSTTQIY 298
            ++ T +Y
Sbjct: 289 NVAYTSVY 296


>gi|71735945|ref|YP_274609.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71556498|gb|AAZ35709.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 321

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 110/241 (45%), Gaps = 30/241 (12%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           ++ I+  +    +  + +   +L +R++K  +    A       TL+  ++   + + + 
Sbjct: 93  VNAIRGVMNEAWRHDLISHEQLLKIRSIKPVSGTRLAKGRNIRRTLIRELMEACAADPRP 152

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS-VRKAI 210
              R++AI+ +LYG G+R SE+++L    I   + +LR+ GKG+K +++   P    KA+
Sbjct: 153 QGRRDAAIIAILYGSGMRKSESVNLDLSQIDFAERSLRVLGKGNK-QLIKYAPEWAFKAL 211

Query: 211 LEYYDL---C--------PFDLNLNIQLPLFRGIRGKPLNPGVFQRY-----IRQLRRYL 254
            ++ +L   C        PF  N        R  RG  +      ++      +Q  R +
Sbjct: 212 NDWLELRRSCLQPGQGDDPFLFN--------RIRRGSHITRDRITKHAIYFIAKQRGRQV 263

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G  ++   H  R SF T ++    DL   Q +  H  +STT  Y ++ S+N    ++E +
Sbjct: 264 G--VNIMPHDFRRSFITRVIEE-FDLSIAQKLAHHTHISTTASY-DMRSENERRNVVEGF 319

Query: 315 D 315
           D
Sbjct: 320 D 320


>gi|134288055|ref|YP_001110219.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134132705|gb|ABO60331.1| phage integrase family protein [Burkholderia vietnamiensis G4]
          Length = 411

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 70/168 (41%), Gaps = 26/168 (15%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIM---DDQS-----TLRIQGKGDKIRIVPLLPSVRKAI 210
           ++  L   GLR  E  S    +I    D+ S     T+++ GKG  +R + L  + R A+
Sbjct: 229 VVRFLLNTGLRRDELASARMSDIYRRYDNASAQYYWTMQVIGKGGVVRTIALNETARNAL 288

Query: 211 LEYYDL-----------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR----YLG 255
             Y              CP  L L  + P  R + G+ +   V +            YL 
Sbjct: 289 QRYRSFFKASTHHTQNDCPIYLPLWGEQPNARPLDGQSIYKDVAKALEDAADALAASYLD 348

Query: 256 LPL---STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             L   + + H  RH+FA+ L   G  + +IQ+ LGH  + TT IY +
Sbjct: 349 ESLLLKAASPHWFRHTFASMLDGLGVSITTIQAQLGHASIETTSIYID 396


>gi|320353406|ref|YP_004194745.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320121908|gb|ADW17454.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 350

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 3/143 (2%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +L LL+   +R SEA  L    I  D+ +L +    ++ R VPL  +V  A LE      
Sbjct: 193 VLILLH-TAMRPSEAAGLKWHQIDFDRRSLTLYITKNEPRTVPLTKTVITA-LEDLKKTA 250

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
           FD          +    + +    F+    + R    LPL    H LRH+ A+ +L  G 
Sbjct: 251 FDNEFVFLKGEGKSQHAQNIPSSRFRPSFDRARERAKLPL-LHMHDLRHTAASQMLMAGT 309

Query: 279 DLRSIQSILGHFRLSTTQIYTNV 301
           D+R++ +ILGH  L     YT++
Sbjct: 310 DIRTLAAILGHSTLQMVLRYTHL 332


>gi|198275585|ref|ZP_03208116.1| hypothetical protein BACPLE_01750 [Bacteroides plebeius DSM 17135]
 gi|198271214|gb|EDY95484.1| hypothetical protein BACPLE_01750 [Bacteroides plebeius DSM 17135]
          Length = 405

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 26/163 (15%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI-----VPLLPSVRKAILEYY 214
            L+GC  GL   +  +L P++   D +T RI  K  +++      +PLLP + K IL+ Y
Sbjct: 252 FLFGCFTGLSYIDIKTLAPEHFEKD-NTGRIWIKKRRVKTGVLSRIPLLP-IAKLILDKY 309

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                            G +  P+ +P    +Y++ +     +    T HT RH+FA+ +
Sbjct: 310 K---------------GGEKLLPIQDPADINKYLKDIAILCDIKKRITFHTSRHTFASTV 354

Query: 274 -LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            L+N   L  +  +LGH     T  Y  +  K  G+ M ++ D
Sbjct: 355 TLANNISLEVVSKMLGHTNTRMTNHYAKLIDKCIGEQMDKLMD 397


>gi|55821041|ref|YP_139483.1| site-specific tyrosine recombinase XerS [Streptococcus thermophilus
           LMG 18311]
 gi|81560599|sp|Q5M4E9|XERS_STRT2 RecName: Full=Tyrosine recombinase xerS
 gi|55737026|gb|AAV60668.1| integrase/recombinase, tyrosine family [Streptococcus thermophilus
           LMG 18311]
          Length = 356

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 115/284 (40%), Gaps = 45/284 (15%)

Query: 58  ITIQTIRQLSYTEIRAFI----------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI 107
           I I+T+  L+  ++ +F+          +  + Q +   ++ R+LS +    KYL +   
Sbjct: 66  IHIKTLENLTKKDMESFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSCLYKYLTEEVE 125

Query: 108 TTESNILNMRNLKKSNSL--------PRALNEKQALTLVDNVL-----LHTSHETKWID- 153
             +      RN+ K  S          RA N KQ L L D  +     +   +E K  + 
Sbjct: 126 GPDGEPYFYRNVMKKISTKKKKETLAARAENIKQKLFLGDETMKFLDYVENEYEVKLSNR 185

Query: 154 ---------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
                     R+ AI+ LL   G+R+SEA++L  ++I   +  + +  KG +   V +  
Sbjct: 186 AKSSFYKNKERDLAIIALLLSSGVRLSEAVNLDLKDINLKRMVIDVTRKGGQRDSVNMAS 245

Query: 205 SVRKAILEY-------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
             R  +  Y       Y     D+ L   L  +RG+  + ++    ++ + +  +     
Sbjct: 246 FARPYLENYLSIRNKRYKAEKQDVALF--LTEYRGVPNR-IDASSIEKMVAKYSQ--DFK 300

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T H LRH+ AT L         +   LGH     T +YT++
Sbjct: 301 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHI 344


>gi|301167248|emb|CBW26830.1| putative tyrosine recombinase [Bacteriovorax marinus SJ]
          Length = 326

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 108/279 (38%), Gaps = 34/279 (12%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G S+ TL++Y+ D   F  +L     E      I      E++ +      +   D S +
Sbjct: 27  GRSQNTLKNYKTDLDCFNQYLIKNEGE----TDITHFGMPEVQHYGQYLEKKYSSDNSRR 82

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS--- 146
           R +  ++ F  YL       E N+     ++K  + P+ L+  +    +D   L  S   
Sbjct: 83  RRVQALRIFFDYL------VEENLFESNPVRKLPTSPKFLDIPRPTPFIDVKTLWVSLLE 136

Query: 147 ------HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKI 197
                      I  RN  ++ L+YG GL++S+   L   NI  +  T R+     K D  
Sbjct: 137 EATSNNEMNALIARRNQIVMLLIYGAGLKVSDLSKLKTSNIFLESETPRVLISHPKRDPY 196

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRG----IRGKPLNPGVFQRYIRQ 249
            I   LP +   + E Y L   D+    ++N    LF      I    L+P   +    +
Sbjct: 197 TIA--LPKIFTQVFEEYILKLSDMKIKSSINFDELLFNANPYRILSGSLSPRGLEVIFEE 254

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
            R+ L + L  T  +LR +     L    D  SI+  +G
Sbjct: 255 YRKKLQITL--TPKSLRQACIFKWLHQEHDETSIKEWMG 291


>gi|255029932|ref|ZP_05301883.1| Tn554-related, transposase A [Listeria monocytogenes LO28]
          Length = 366

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 94/228 (41%), Gaps = 47/228 (20%)

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           + +   K FL ++ K K  +ES IL ++  K           + AL    NV        
Sbjct: 137 KGIKQYKGFLHHITKNKRVSES-ILKLKEPKSRVETIPDFTLQAALGATTNV-------- 187

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-----PLLP 204
                R+  +L LLY  GLRI E LSL  ++I+ D        +G ++R+V     P   
Sbjct: 188 -----RDFFLLRLLYETGLRIGEILSLHKEDILFDLH------QGHRVRLVYRKEQPNDS 236

Query: 205 SVRKAILEYY------DLCPFD------LNLNIQLPLFRGIRGK----PLNPGVFQRYIR 248
             +  + E +      DL  FD      L+ +    LF  ++GK    PLN   +Q  + 
Sbjct: 237 RQKTGLREVHISANLIDL--FDDYMYSILDFDRSDSLFVKVKGKSQGLPLN---YQDVMA 291

Query: 249 QLRRYLG-LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             +R  G +      H  RH+ AT       D++ +Q  LGH  + TT
Sbjct: 292 TFKRIEGKIEYHLHPHLYRHTHATKYYEQTKDIKIVQERLGHKHIQTT 339


>gi|160888482|ref|ZP_02069485.1| hypothetical protein BACUNI_00899 [Bacteroides uniformis ATCC 8492]
 gi|298374442|ref|ZP_06984400.1| integrase [Bacteroides sp. 3_1_19]
 gi|156862159|gb|EDO55590.1| hypothetical protein BACUNI_00899 [Bacteroides uniformis ATCC 8492]
 gi|298268810|gb|EFI10465.1| integrase [Bacteroides sp. 3_1_19]
          Length = 403

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 18/159 (11%)

Query: 167 GLRISEALSLTPQNI---MDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           GL  ++  +L P++I    + +  +RI+  K D    +PL P +   IL+ Y+    D  
Sbjct: 251 GLAYADTRALHPRHIGTTSEGRRYIRIRRAKTDVEAFIPLHP-IAGQILDLYNTTDDDR- 308

Query: 223 LNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
                P+F      PL    V    +  +   LG+  + + H  RHSF T  L+ G  + 
Sbjct: 309 -----PVF------PLPVRDVLWYEVHGMGVALGMKENLSYHMARHSFGTLTLTAGIPIE 357

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           SI  I+GH  + +TQ+Y  V  +     M  + ++  P+
Sbjct: 358 SIARIMGHTNIDSTQVYAQVTDRKISSDMDRLMERRKPA 396


>gi|170737066|ref|YP_001778326.1| integrase family protein [Burkholderia cenocepacia MC0-3]
 gi|169819254|gb|ACA93836.1| integrase family protein [Burkholderia cenocepacia MC0-3]
          Length = 563

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 125/306 (40%), Gaps = 49/306 (16%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +ERG +  +L +   D   +  FL   T  +  +   R    +E R F     T  +  R
Sbjct: 252 VERGRALSSLNT--DDAIAYRGFLRRPTPRERWVAPSRPRHSSEWRPF-----TGPLSAR 304

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN----SLPRALNEKQAL---TLVD 139
           S   +L+ + +  ++L +++    +    ++    +      + R  +E + L   TL D
Sbjct: 305 SAAYALNVVSALFRWLVEQRYVLANPFAGVKVKSHAQRTGLDVSRGFSEGEWLLIRTLAD 364

Query: 140 NVLLHTSHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDDQST---LRIQGK 193
              L  S+   W       + +LL   Y  GLR SE +     +I  D+     L ++GK
Sbjct: 365 G--LEWSY--GWSAPAAQRLRFLLDFGYATGLRASELVGAMLGDIRRDEHGDHWLHVRGK 420

Query: 194 GDKIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYI 247
           G K+  V  +PS+ +  L+ Y     L       N   P+   +   G  + P   +R  
Sbjct: 421 GGKLGKV-AMPSLARTALDQYLVQRGLPIAPARWNPATPIIASLEADGTGIEP---RRLS 476

Query: 248 RQLRRYLGL-------PLSTTA--------HTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           R L R+  L          TTA        H +RH+ A+H L+ G +L  ++  L H  +
Sbjct: 477 RVLHRFFVLIADAIQDERPTTAEKLRRASPHWMRHTHASHALARGAELIMVRDNLRHASV 536

Query: 293 STTQIY 298
           STT IY
Sbjct: 537 STTSIY 542


>gi|161522728|ref|YP_001585657.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189348418|ref|YP_001941614.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
 gi|160346281|gb|ABX19365.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189338556|dbj|BAG47624.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
          Length = 226

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 78/200 (39%), Gaps = 43/200 (21%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------GKG 194
           LL  +  T    AR++ IL L    G+RI+E   LT  ++M     LR +        KG
Sbjct: 19  LLRVTEATSRHPARDAVILLLGMSVGMRITEVAQLTVADVMFRSGALRTEVSLRAAITKG 78

Query: 195 DKIRIVPLLPSVRK---AILEYYDL-CPFDLNLNIQLPLFRG-IRGKPL----------- 238
            + R V    S RK   AI  Y       +L   +    FRG I   PL           
Sbjct: 79  CRQRAVYF--SSRKLVDAIERYLAFRVTHELGTTLDKSRFRGLIPDLPLILSRKRYPYSL 136

Query: 239 ----------------NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
                                Q Y+  L +  G+  S+  H+ R +FAT LL  G  +  
Sbjct: 137 NRKKRFSADGQLMDYWAADSLQSYVTSLYKAAGIKASS--HSGRRTFATRLLGRGATIEQ 194

Query: 283 IQSILGHFRLSTTQIYTNVN 302
           +Q +LGH  +  T+ Y +V+
Sbjct: 195 VQLLLGHESIDDTRRYIDVD 214


>gi|46581232|ref|YP_012040.1| phage integrase family site specific recombinase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46450653|gb|AAS97300.1| site-specific recombinase, phage integrase family [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 394

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 64/148 (43%), Gaps = 24/148 (16%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQG-------KGDKIRIVPLLPSVRKAILEYYDLCPF 219
           G+R  E + L  ++I  D  T+RI         KG + RIV       ++I         
Sbjct: 235 GMRAGELVRLRTEDIDVDHGTIRIYSGSDAGITKGGRTRIVHAGHLFAESITM------- 287

Query: 220 DLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-------HTLRHSFA 270
            L   +  P  LF G  G   N     R +  +   LGL    T        HTLRH++A
Sbjct: 288 -LRRRVGSPGLLFPGRGGAVRNTTAVSRAMAHICATLGLNADVTDDRNRIVWHTLRHTYA 346

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIY 298
           T +L  G D+ +++ +LGH  ++ T+ Y
Sbjct: 347 TRMLEAGIDIYTLKELLGHSSVAVTERY 374


>gi|332977017|gb|EGK13826.1| integrase/recombinase XerD [Desmospora sp. 8437]
          Length = 207

 Score = 44.7 bits (104), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 6/148 (4%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           LLY  G+R+SE +++   +I   +  +R+ +GKG K RIVP   + ++ +  + D     
Sbjct: 54  LLY-TGVRVSELINIKLSDIDFQRCQIRVNEGKGKKDRIVPFPTAFKELLAMHAD----S 108

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
                 + LF     K       ++ +++     G+  S + H LRH   T L   G D 
Sbjct: 109 TEKKGAVYLFESSWKKKYTDRGIRKILKKYSDQAGMAQSISPHKLRHFLLTWLKKQGIDD 168

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGD 308
             IQ   GH    + ++Y+ +   +  D
Sbjct: 169 ALIQPYSGHASRKSLEVYSKLTITDAQD 196


>gi|291544956|emb|CBL18065.1| Site-specific recombinase XerD [Ruminococcus sp. 18P13]
          Length = 441

 Score = 44.7 bits (104), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 126/314 (40%), Gaps = 50/314 (15%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           FE       WL+   I+  L++ + QSY   TR ++  +  Y +E+     +  L+  ++
Sbjct: 99  FEFTAFLDYWLET--IKPTLARTSHQSY---TR-YITRIKNYFDERYPHLLLGNLTALQL 152

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           + F + +    +   S+K   + I   LKY  K  +  + N+ +   L K          
Sbjct: 153 QQFYNDKYNSGLSGNSVKHYHANIHKALKYAVKMDML-DINVADKVELPKIQKFEANFYN 211

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           K  L  +  V         +   R   ++++    GLR SE + L   ++  ++  L ++
Sbjct: 212 KDELEQLFEV---------FKGDRLELVVHIAAYYGLRKSEIIGLKWDSVNFEEKKLTVR 262

Query: 192 -------GKGDK-------------IRIVPLLPSV------RKAILEYYD-LCPFDLNLN 224
                  G G +             +R  PL+P +      RK + EYY  L   D +  
Sbjct: 263 RKVSSTYGSGKEMIFVENQLKTESSVRTFPLIPHIEQMLIERKTLEEYYSKLLGKDFDRE 322

Query: 225 IQLPLFRGIRGKPLNPGVFQ---RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
               + R   GK + P       +YI Q  +   +      H LRHS A+ LL+NG  ++
Sbjct: 323 YDGFVCRDNFGKLITPNFVTSHFKYIIQKNKLKHIRF----HDLRHSCASLLLANGVSMK 378

Query: 282 SIQSILGHFRLSTT 295
           +IQ  LGH   + T
Sbjct: 379 AIQEWLGHSTFNVT 392


>gi|228987438|ref|ZP_04147558.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228772410|gb|EEM20856.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 319

 Score = 44.7 bits (104), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 126/294 (42%), Gaps = 23/294 (7%)

Query: 16  KERQNWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +E +N +++  IE+   G +  TLQ Y  D R  L  +  + E K  I+  R+    +IR
Sbjct: 16  QENKNLVKDFLIEKKAQGKAASTLQQYHWDLRIILFLIHEHFENKNLIELTRK----DIR 71

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILN-MRNLKKSNSLP-RAL 129
                 +  ++ +  +   +S ++S L++  +      E N+ + +R L K+       +
Sbjct: 72  NLSIIFQEMEMSNARVNGLMSALRSALEFCAEDDDYEYEFNVGSRVRGLPKNPVREITFI 131

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            E+Q   L+D ++    +         +  L L Y    R +E   +  + + +   T  
Sbjct: 132 TEEQIEWLIDELIAQEKYML-------ATYLALSYYSAARKNEVYQVQKEGLTEQYYTNV 184

Query: 190 IQGK-GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           ++GK G K R+    P V+K I  Y +    D   ++ + +++    K LN  VF  + +
Sbjct: 185 VRGKRGKKFRLY-YNPRVQKCIRLYINQRGKDTIPDLFVRVYKNGGRKHLNKSVFNYWCK 243

Query: 249 QLRRYL----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              + L    G       H  RHS   +L   G  L  ++S+  H  +STTQ Y
Sbjct: 244 IFAKMLYEKEGKEFKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSY 297


>gi|158317270|ref|YP_001509778.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158112675|gb|ABW14872.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 477

 Score = 44.7 bits (104), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS- 293
           G PL P    R    LRR  GLP     H LRH+FA+ L + G   R++  +LGH  +  
Sbjct: 375 GTPLEPRNVNRRFDVLRRQAGLPW-LRLHDLRHAFASMLFAEGVPARTVMELLGHSTIQL 433

Query: 294 TTQIYTNV 301
           T   YT+V
Sbjct: 434 TMNTYTHV 441


>gi|147678470|ref|YP_001212685.1| integrase [Pelotomaculum thermopropionicum SI]
 gi|146274567|dbj|BAF60316.1| integrase [Pelotomaculum thermopropionicum SI]
          Length = 314

 Score = 44.7 bits (104), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 95/233 (40%), Gaps = 21/233 (9%)

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q +   +    L  +K+F  +  +  I T++ +   +  K    +     EK A     
Sbjct: 70  AQPVKPATFNLRLVNLKAFFDWCIQEGIFTDNPLAGFKRRKAEGRVVNIEEEKLAR---- 125

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD------QSTLRIQ-G 192
             LL   ++  +   R+ A+L L    G+R  EA SL    ++DD      +  +R +  
Sbjct: 126 --LLTLPNKETFAGLRDYALLLLTLDTGIRPKEAFSL----LVDDINLRSLEVCIRSEIA 179

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K    R +P+ P   + I E   L           P+F    G  +    +   +    +
Sbjct: 180 KTRTTRTLPISPVTAQVIREL--LQSRHPAWKNSTPVFCSSEGGKMTDLKWGDRLEVYSK 237

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            LG+ +    + LRH+FA   L NGG   ++Q ILGH  L+ T+ Y  +  ++
Sbjct: 238 QLGVWIR--PYDLRHAFALQFLRNGGQPFALQRILGHTDLTMTKRYIALTQQD 288


>gi|139438892|ref|ZP_01772352.1| Hypothetical protein COLAER_01356 [Collinsella aerofaciens ATCC
           25986]
 gi|133775603|gb|EBA39423.1| Hypothetical protein COLAER_01356 [Collinsella aerofaciens ATCC
           25986]
          Length = 231

 Score = 44.7 bits (104), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGH-FRLSTTQIYTNV 301
           T H LRH+FAT  +  GGD++++QSILGH   ++T  +Y ++
Sbjct: 122 TFHGLRHTFATQWIRQGGDIKALQSILGHKDAMATLSVYADI 163


>gi|298487012|ref|ZP_07005064.1| site-specific recombinase, phage integrase family [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298158454|gb|EFH99522.1| site-specific recombinase, phage integrase family [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 250

 Score = 44.7 bits (104), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 105/231 (45%), Gaps = 30/231 (12%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           ++ I+  +    +  + +   +L +R++K  +    A       TL+  ++   + + + 
Sbjct: 22  VNAIRGVMNEAWRHDLISHEQLLKIRSIKPVSGTRLAKGRNIRRTLIRELMEACAADPRP 81

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS-VRKAI 210
              R++AI+ +LYG G+R SE+++L    I   + +LR+ GKG+K +++   P    KA+
Sbjct: 82  QGRRDAAIIAILYGSGMRKSESVNLDLSQIDFAERSLRVLGKGNK-QLIKYAPEWAFKAL 140

Query: 211 LEYYDL---C--------PFDLNLNIQLPLFRGIRGKPLNPGVFQRY-----IRQLRRYL 254
            ++ +L   C        PF  N        R  RG  +      ++      +Q  R +
Sbjct: 141 NDWLELRRSCLQPGQGDDPFLFN--------RIRRGSHITRDRITKHAIYFIAKQRGRQV 192

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           G+ +    H  R SF T ++    DL   Q +  H  +STT  Y ++ S+N
Sbjct: 193 GVNI--MPHDFRRSFITRVIEE-FDLSIAQKLAHHTHISTTASY-DMRSEN 239


>gi|293372928|ref|ZP_06619297.1| phage integrase, N-terminal SAM domain protein [Bacteroides ovatus
           SD CMC 3f]
 gi|292631996|gb|EFF50605.1| phage integrase, N-terminal SAM domain protein [Bacteroides ovatus
           SD CMC 3f]
          Length = 368

 Score = 44.7 bits (104), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 54/249 (21%), Positives = 106/249 (42%), Gaps = 23/249 (9%)

Query: 51  AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE 110
            +YT  +   +   +L+    R FI     +K+   +++  ++ I+ F K++KK     E
Sbjct: 124 VYYTSLRKYFEYANELNMDNCRRFIKSLEEEKLSPATIRLRITAIEKFSKWVKK---PIE 180

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
                M+     N++P    E++   L++ +      +TK ++      + +L   G R+
Sbjct: 181 LKRPRMKRKLDVNNVP---TEEEYNRLLEYL------KTK-LNKDYYFFIKVLGTTGARL 230

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
           SE    T ++I   +  L+  GKG+K R       +++ + +Y         L +     
Sbjct: 231 SEFQQFTWEDIAAGEVVLK--GKGNKYRRFFFQKQLQREVKDYIKETGKSGTLAVG---- 284

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGH 289
              R  PL      ++++   ++ G+      AH  RH FA   L    D+  +  +LGH
Sbjct: 285 ---RFGPLTQRGLSQHLKVWGKHCGIDSKKMHAHAFRHFFAKMFLKKTKDVIQLADLLGH 341

Query: 290 FRLSTTQIY 298
             + TT+IY
Sbjct: 342 GSVDTTRIY 350


>gi|257878400|ref|ZP_05658053.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257882818|ref|ZP_05662471.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257889401|ref|ZP_05669054.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|257894414|ref|ZP_05674067.1| phage integrase [Enterococcus faecium 1,231,408]
 gi|257812628|gb|EEV41386.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257818476|gb|EEV45804.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257825761|gb|EEV52387.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|257830793|gb|EEV57400.1| phage integrase [Enterococcus faecium 1,231,408]
          Length = 351

 Score = 44.7 bits (104), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS- 293
           G+ + P V +   R++     L LS   H+LRH+ AT LL NG  ++ I   LGH R+S 
Sbjct: 267 GELVTPSVVKWNTRRISN--ALSLSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISI 324

Query: 294 TTQIYTNVNSK 304
           T   Y++V  K
Sbjct: 325 TMDTYSHVTDK 335


>gi|238896397|ref|YP_002921135.1| tyrosine recombinase [Klebsiella pneumoniae NTUH-K2044]
 gi|238548717|dbj|BAH65068.1| site-specific recombinase involved in flagellar phase
           switching/type 1 fimbriae regulatory protein with FimB
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 202

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 70/169 (41%), Gaps = 8/169 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEY 213
           R+  ++ L +  G+RISE L L   ++   +  + ++  K     I PL    R+AI E 
Sbjct: 27  RDYCLILLAFRHGMRISELLDLHYHDLDLHEGRVNVRRLKNGFSTIHPLRFDEREAI-ER 85

Query: 214 YDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           + L         +   LF   RG  L+     R IR      G    T  H LRH+    
Sbjct: 86  WSLVRAGWKAADKTDALFISRRGTALSRQQAYRIIRSAGENAGTVTHTHPHMLRHACGYE 145

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-GGDW----MMEIYDQ 316
           L   G D R IQ  LGH  +  T  YT  N+    G W    ++E  DQ
Sbjct: 146 LAERGTDTRLIQDYLGHRNIRHTVRYTASNAARFAGIWERNNLLEEKDQ 194


>gi|158335422|ref|YP_001516594.1| phage integrase [Acaryochloris marina MBIC11017]
 gi|158305663|gb|ABW27280.1| phage integrase, putative [Acaryochloris marina MBIC11017]
          Length = 369

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 20/158 (12%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTL----------RIQGKGDKIRIVPLLPSV 206
           S  +  L+G G R  EA  L  ++I DD  T+          R   K  K R + L P+V
Sbjct: 209 SDFVIFLFGVGCRFGEAAGLLWKHIADDFQTVWIGESVSRGYRKSTKTGKARTIVLSPNV 268

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL---GLPLSTTAH 263
           +  +   Y+     L  N++  +F   +G P+    F+R  R  +  L   G+      +
Sbjct: 269 QSMLKARYE----RLKPNLEDLVFPSPQGLPICDRSFRR--RAWKTVLIKCGIEYRK-PY 321

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            +RHS  +H L++G D  S+    GH +    + Y +V
Sbjct: 322 AIRHSAVSHALASGADPISVAEQSGHDKRVMLESYAHV 359


>gi|326407220|gb|ADZ64291.1| integrase [Lactococcus lactis subsp. lactis CV56]
          Length = 403

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 26/164 (15%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYD 215
           +L  L   GLRI EA++L+  +I   Q T+ +       ++I++ P   +  + I    D
Sbjct: 223 LLPFLASTGLRIGEAVALSWSDIDFKQGTVTVSKTVNDSNQIQLSPKTETSNRTI----D 278

Query: 216 LCPFDLNL----------------NIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +    LNL                N   PL F  I G  LN  + +  +      +GLP 
Sbjct: 279 IDKSTLNLLSKWQLEIKKEFLKYGNPNQPLLFPNINGSVLNSRLLRNTLLDCFENVGLP- 337

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNV 301
           +   H  RH+ AT  LS G   ++IQ+ LGH  L  T  IY ++
Sbjct: 338 NIGFHGFRHTHATLCLSAGMSYKAIQTRLGHSTLQMTMDIYAHL 381


>gi|332829973|gb|EGK02601.1| hypothetical protein HMPREF9455_00851 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 413

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 40/76 (52%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           I Q+ + + L  + + H  RHSF T  +S G  + SI  ++GH  +STTQ+Y  +  +  
Sbjct: 323 INQIGKLIDLKENLSYHQSRHSFGTLAISAGLPIESIAKMMGHANISTTQVYAQITEQKI 382

Query: 307 GDWMMEIYDQTHPSIT 322
            D M ++  +   S T
Sbjct: 383 SDDMDKLIKRRKKSAT 398


>gi|304382840|ref|ZP_07365323.1| integrase [Prevotella marshii DSM 16973]
 gi|304336025|gb|EFM02272.1| integrase [Prevotella marshii DSM 16973]
          Length = 409

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 3/61 (4%)

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           QLR  + +PL  TAH  RH+FAT + L NG  + ++  +LGH ++ TT+ Y +V  K   
Sbjct: 335 QLRAGIAIPL--TAHIGRHTFATLITLENGVPIETVSKMLGHSKIETTERYAHVTPKKVF 392

Query: 308 D 308
           D
Sbjct: 393 D 393


>gi|213027994|ref|ZP_03342441.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 189

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 73/173 (42%), Gaps = 20/173 (11%)

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           + EK+   L    ++    + K  D   + ++ +    G R  EA++LT   +   + T 
Sbjct: 6   IAEKEMAWLTHEQIVELLADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITF 65

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            ++ KG K R +P+   + + I+    L  F+                      FQ    
Sbjct: 66  -VRTKGKKNRSIPISKELYEEIMA---LDGFNF----------------FTDCYFQFLSV 105

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             +  + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++
Sbjct: 106 MEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 158


>gi|206577666|ref|YP_002236692.1| type 1 fimbriae regulatory protein FimB [Klebsiella pneumoniae 342]
 gi|290511258|ref|ZP_06550627.1| tyrosine recombinase [Klebsiella sp. 1_1_55]
 gi|206566724|gb|ACI08500.1| type 1 fimbriae regulatory protein FimB [Klebsiella pneumoniae 342]
 gi|289776251|gb|EFD84250.1| tyrosine recombinase [Klebsiella sp. 1_1_55]
          Length = 209

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 35/75 (46%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LF   +G PL+   F + I       GLPL    H LRHS    L + G D R IQ  LG
Sbjct: 115 LFLSRKGNPLSRQQFYQIIASSGDLAGLPLEIHPHMLRHSCGFALANMGIDTRLIQDYLG 174

Query: 289 HFRLSTTQIYTNVNS 303
           H  +  T  YT  N+
Sbjct: 175 HRNIRHTVWYTASNA 189


>gi|33867121|ref|NP_898679.1| putative DNA integrase/recombinase [Rhodococcus erythropolis]
 gi|33668955|gb|AAP73949.1| putative DNA integrase/recombinase [Rhodococcus erythropolis]
          Length = 419

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 20/185 (10%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           + S  +PRA+ E     L D +    S +      R+ A++      G+R SE L +   
Sbjct: 199 RVSQRIPRAIPED----LFDKLFAALSSD------RDRALVAFWISSGVRASELLGVREC 248

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE---YYDLCPFDLNLNIQLPLFRGIRG- 235
           ++   Q  + +  KG   R V  +P+   A +    Y +    ++ L    PL+  +R  
Sbjct: 249 DVDPGQQLITVVRKG--TRAVEQVPASADAFVWLRLYQEQLRGEVPLGRMQPLWWTLRRP 306

Query: 236 -KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLS 293
            +PLN     R   +    LG     T H LRHS A  + ++    L  ++ +LGH  LS
Sbjct: 307 RRPLNYHAAHRMFERANATLGS--DWTLHDLRHSAARRMANDPHLSLVEVKEVLGHAHLS 364

Query: 294 TTQIY 298
           TT+IY
Sbjct: 365 TTEIY 369


>gi|69246683|ref|ZP_00604073.1| Phage integrase [Enterococcus faecium DO]
 gi|68195157|gb|EAN09615.1| Phage integrase [Enterococcus faecium DO]
          Length = 375

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS- 293
           G+ + P V +   R++     L LS   H+LRH+ AT LL NG  ++ I   LGH R+S 
Sbjct: 291 GELVTPSVVKWNTRRISN--ALSLSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISI 348

Query: 294 TTQIYTNVNSK 304
           T   Y++V  K
Sbjct: 349 TMDTYSHVTDK 359


>gi|323126847|gb|ADX24144.1| putative transposon integrase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 414

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 18/116 (15%)

Query: 198 RIVPLLPSVRKAI-LEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLR 251
           R VPLLP V++A+ +E       +++  + +      +F    G   + G   + ++++ 
Sbjct: 266 RTVPLLPKVKEALKMEKQRQTELEISCRVVINGFTNFIFLNRFGDLYHQGTLNKALKRII 325

Query: 252 RYLGLPL------------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           R     +            + + H+LRH+F T ++  G +L+++Q ILGH  +STT
Sbjct: 326 RDCNFSVLDGKINSEVTLPNFSNHSLRHTFTTRMVEAGTNLKAMQDILGHSDISTT 381


>gi|314950374|ref|ZP_07853650.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
 gi|313643325|gb|EFS07905.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
          Length = 397

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 33/194 (17%)

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI------ 181
           AL E+Q   L+  +     +   + D      + +L   GLRISE   LT  +I      
Sbjct: 190 ALTEEQEQALLSFIKTDNVYHKHYDD------VLILLKTGLRISELCGLTVADIDFKNEV 243

Query: 182 -MDDQSTLRIQGKG---------DKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQL 227
            + D   L+ + +G           IR VPL    + + ++ + ++    PF ++     
Sbjct: 244 VIIDHQLLKSKEQGYYIETPKTKSGIRQVPLSRETIQAFQRVMKKHPKAEPFVIDGRSNF 303

Query: 228 PLFRGIRGKPLNP----GVFQRYIRQL-RRYLGLPLS-TTAHTLRHSFATHLLSNGGDLR 281
            LF   +GKP        +F R I++  + +   PL   T HTLRH+F T L S   + +
Sbjct: 304 -LFVNHKGKPKVAIDYNALFVRMIKKYNKHHKDNPLPHITPHTLRHTFCTRLASKNMNPK 362

Query: 282 SIQSILGHFRLSTT 295
            +Q I+GH  +S T
Sbjct: 363 DLQYIMGHSNISIT 376


>gi|314950814|ref|ZP_07853885.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
 gi|313596990|gb|EFR75835.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
          Length = 371

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS- 293
           G+ + P V +   R++     L LS   H+LRH+ AT LL NG  ++ I   LGH R+S 
Sbjct: 287 GELVTPSVVKWNTRRISN--ALSLSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISI 344

Query: 294 TTQIYTNVNSK 304
           T   Y++V  K
Sbjct: 345 TMDTYSHVTDK 355


>gi|294676507|ref|YP_003577122.1| phage integrase [Rhodobacter capsulatus SB 1003]
 gi|294475327|gb|ADE84715.1| phage integrase [Rhodobacter capsulatus SB 1003]
          Length = 409

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 24/159 (15%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPL------L 203
           D R ++I+ L    G R+ E  + T      D +    Q    K  +I  VP+      L
Sbjct: 240 DQRAASIIRLCMLTGARLGEVRTATFDQFNLDLAIWTKQAAYTKQRRIHRVPISHEAVAL 299

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
             +R+ I+     CPF         LF G +  +P+  G  +R+  ++++   +P     
Sbjct: 300 IRLRREIVPKG--CPF---------LFPGDVPDQPV--GDPKRFWPKMQKVALIP-DVRI 345

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H LRH+FA+ L+S G  L  I  +LGH ++ TTQ Y ++
Sbjct: 346 HDLRHTFASLLVSGGASLEMIGRLLGHTQIGTTQRYAHL 384


>gi|257869751|ref|ZP_05649404.1| integrase [Enterococcus gallinarum EG2]
 gi|331087644|ref|ZP_08336572.1| transposase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|257803915|gb|EEV32737.1| integrase [Enterococcus gallinarum EG2]
 gi|330399823|gb|EGG79483.1| transposase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 397

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 90/210 (42%), Gaps = 33/210 (15%)

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           N  + K S  L     EK ALT      L +  +T  +  +    + +L   GLRISE  
Sbjct: 171 NPFDFKLSEVLENDTKEKVALTEEQEQALLSFIKTDNVYHKYYDDVLILLKTGLRISELC 230

Query: 175 SLTPQNIMD----------DQSTLRIQGKG---------DKIRIVPL----LPSVRKAIL 211
            LT   IMD          D   L+ + +G           IR VPL    + + ++ + 
Sbjct: 231 GLT---IMDVDFIHEVVVIDHQLLKSKEQGYYIETPKTKSGIRQVPLSRETIQAFQRVMK 287

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNP----GVFQRYIRQL-RRYLGLPLS-TTAHTL 265
           ++    PF ++      LF   +GKP        +F R I++  + +   PL   T HTL
Sbjct: 288 KHPKAEPFVIDGRSNF-LFVNHKGKPKVAIDYNALFVRMIKKYNKHHKDNPLPHITPHTL 346

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           RH+F T L S   + + +Q I+GH  +S T
Sbjct: 347 RHTFCTRLASKNMNPKDLQYIMGHSNISIT 376


>gi|237741434|ref|ZP_04571915.1| site-specific recombinase [Fusobacterium sp. 4_1_13]
 gi|237745172|ref|ZP_04575653.1| site-specific recombinase [Fusobacterium sp. 7_1]
 gi|294785953|ref|ZP_06751241.1| site-specific recombinase, phage integrase family [Fusobacterium
           sp. 3_1_27]
 gi|229429082|gb|EEO39294.1| site-specific recombinase [Fusobacterium sp. 4_1_13]
 gi|229432401|gb|EEO42613.1| site-specific recombinase [Fusobacterium sp. 7_1]
 gi|294487667|gb|EFG35029.1| site-specific recombinase, phage integrase family [Fusobacterium
           sp. 3_1_27]
          Length = 396

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 91/223 (40%), Gaps = 36/223 (16%)

Query: 105 RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLY 164
           RK+  E+ +L +   KK   +    N K+  T ++ +  H     K+    N A+ Y   
Sbjct: 166 RKLIKENIMLEIPRPKKEKYISEVFNLKEINTFLNYIKGH-----KFELELNLALFY--- 217

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGK-----------------GDKIRIVPLLPSVR 207
             G R SE L L    I  D +T+ +  K                     RI+PLL S++
Sbjct: 218 --GFRRSELLGLRFSVIDFDNNTILVNTKITSSEEEKLVAKQKMKNDSSYRIMPLLASIK 275

Query: 208 KAILEYYDLCPFDLNL-------NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           + I++  +    D N          +  +  G  G+ + P    +  R+L +  GL    
Sbjct: 276 ELIIQRMERIKKDKNFFKSSYTKKWEGFICVGEDGELIKPDRVTKTFRRLIKECGLK-KI 334

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN 302
             H LRHS AT L      L+ IQ  LGH  + TT  IY++ +
Sbjct: 335 RLHDLRHSCATLLYEQDIQLKDIQMWLGHSDIQTTANIYSHFD 377


>gi|228960186|ref|ZP_04121843.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|228799454|gb|EEM46414.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar pakistani str. T13001]
          Length = 376

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 37/159 (23%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQ-------GKGD--------KIRIVPLLPSVRKAIL 211
           G+RI E L+L   +I  +  T+ +Q       GK +          RI+P+   +   +L
Sbjct: 198 GMRIGEVLALQWDDINFENKTIHVQRTLTLVDGKYELGETKTEASNRIIPMTEELMGELL 257

Query: 212 EY--------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           EY        +DL     N  I  P     + K L   +   YIR              H
Sbjct: 258 EYQSHKKENSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYIR-------------FH 304

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
            +R +F T L+ +G + + +  +LGH  +STT  IYT+V
Sbjct: 305 DIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDV 343


>gi|157147899|ref|YP_001455218.1| tyrosine recombinase [Citrobacter koseri ATCC BAA-895]
 gi|157085104|gb|ABV14782.1| hypothetical protein CKO_03706 [Citrobacter koseri ATCC BAA-895]
          Length = 212

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 67/157 (42%), Gaps = 2/157 (1%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEY 213
           R+  ++ L +  G+RISE L+L  ++    +  + I+  K     I PL+P   +AI  +
Sbjct: 27  RDYCLILLAFRHGMRISELLNLHYRDFDLYEGRINIRRLKNGFSTIHPLMPDECEAIECW 86

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
             +            +F   +G  L+     R IR   +  G   +T  H LRH+    L
Sbjct: 87  SRVRASWKGAQKINAVFISRKGSQLSRQQAYRIIRSAGQKAGTSTTTHPHMLRHACGYEL 146

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-GGDW 309
              G D R IQ  LGH  +  T  YT  N+    G W
Sbjct: 147 AERGTDTRLIQDYLGHRNIRHTVRYTASNAARFAGLW 183


>gi|255103348|ref|ZP_05332325.1| phage integrase family protein [Clostridium difficile QCD-63q42]
 gi|255652426|ref|ZP_05399328.1| phage integrase family protein [Clostridium difficile QCD-37x79]
          Length = 311

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 124/296 (41%), Gaps = 29/296 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G S+ T+ +YECD  QF  FL     + +    +  ++  EI A+I         ++ ++
Sbjct: 34  GKSEKTIYNYECDIMQFFKFLNIECFDAL----LTDINEEEIEAYIGYCMEHGNNEKRIR 89

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R +S I S L +LKK++  T+       N  +    P    E Q  T +    L    E 
Sbjct: 90  RRISSISSLLSFLKKKRKITD-------NWCEMIERPGTGEEVQKRTFLTEEQLSKLKEK 142

Query: 150 KWIDARNSAILYLLYGCGL----RISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLP 204
             +  +++  L +    GL    R +E       NI +D++    I  KG   R      
Sbjct: 143 --LSEQDNLQLEVYINLGLATMARSNEISQFRWDNIDLDNRWIHGITAKGGVSRDFRFSE 200

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGK--PLNPGVFQRYIRQLRRYLGLPLST 260
            V+  ++E+ D    +   NI  P   F    GK   +N  V   ++++  R +G+    
Sbjct: 201 EVQHLLIEWKDYLSQN---NIDYPYIFFTRYGGKYNQVNSNVLSSWVKKAFRLIGIE-GG 256

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             H LRHS +  L   G  + ++  +LGH  +  T  +  + +KN    + E YD+
Sbjct: 257 YNHDLRHSMSNLLKDRGVPITTVSKLLGHSGVDVTINHYTIENKNK---LAEEYDK 309


>gi|209519412|ref|ZP_03268209.1| integrase family protein [Burkholderia sp. H160]
 gi|209500151|gb|EEA00210.1| integrase family protein [Burkholderia sp. H160]
          Length = 360

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 128/310 (41%), Gaps = 41/310 (13%)

Query: 16  KERQNWLQNLEI--ERGLSKLTLQS-----YECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++R++W ++ +I  +  L+K   +      Y+    QFL +L    +   T+ T    + 
Sbjct: 22  QQREDWRRDPQIAFDAWLAKQHFRRSSALVYQAQWGQFLDWLGTRQQSLATVDTP---AI 78

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK--------RKITTESNILNMRNLK 120
            E  A +  RRTQ+I      R L  I+  L ++++         +   +      RN  
Sbjct: 79  AEFVASLEIRRTQRI------RYLRLIERVLDHVREIESASTNPARFIAQDGEAAWRN-A 131

Query: 121 KSNSLPRALNEKQALTLVDNV---LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           + N     L  ++   L+  +   L  +S   +W + R+ A++ +  G GL+  EA +LT
Sbjct: 132 RDNEPTGFLTHEERTALIARLFAPLPASSRAQRWRERRDRALIAVFLGGGLKTGEAGALT 191

Query: 178 PQNIMDDQSTLRIQGKGD----KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
              +      + I+        + R+ P   ++  A L    L   +L  ++  P     
Sbjct: 192 VSCVKAGSPWVTIESANPMLTRRTRLAPFATAILDAWLAERRLT--ELAGDLVFPA--SP 247

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLS----TTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
            G+P++     R +  L    G+  S     +  TLR++FA  L  +G +   +   LG 
Sbjct: 248 SGRPMHKATMLRAVDALVDAAGIAASRQSRASPQTLRNTFAADLFESGVEAEQVGQWLGF 307

Query: 290 FR-LSTTQIY 298
            + +S  ++Y
Sbjct: 308 VQAVSANRLY 317


>gi|163791714|ref|ZP_02186105.1| integrase/recombinase, fragment (putative) [Carnobacterium sp. AT7]
 gi|159873006|gb|EDP67119.1| integrase/recombinase, fragment (putative) [Carnobacterium sp. AT7]
          Length = 183

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 11/152 (7%)

Query: 153 DARNSAILYLL-YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           +A     L+L+    GLR+S+ + L  ++++  ++   ++ K  K RI+  L S++  I 
Sbjct: 26  NADRDVFLFLIGINSGLRMSDIVKLKKKDLISSKNPRIVEKKTGKTRIL-YLSSLQDLIR 84

Query: 212 EYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           +Y  DL P D        LF   +G  +      +  +++ + LG       HTLR +F 
Sbjct: 85  DYTKDLAPEDY-------LFPSTKGGHIEVNTVYQMFQKVAKLLGRD-DIGTHTLRKTFG 136

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            H      D+ ++  I GH     T+ Y  +N
Sbjct: 137 YHYYKKTKDVATLMEIFGHSSEKITKRYIGIN 168


>gi|319641682|ref|ZP_07996365.1| phage integrase family Site-specific recombinase [Bacteroides sp.
           3_1_40A]
 gi|317386656|gb|EFV67552.1| phage integrase family Site-specific recombinase [Bacteroides sp.
           3_1_40A]
          Length = 401

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 84/182 (46%), Gaps = 22/182 (12%)

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI- 181
           +++P  +  KQ+L+L +   L+ S E      R +AI   L   GLRIS+ L+L  +NI 
Sbjct: 193 DNIPCTIPVKQSLSLEEVRKLYNS-ECSVPVVRKAAIFSCL--SGLRISDILNLKWENIQ 249

Query: 182 --MDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
              D    L  +  K  +   VP+     + I       P   +  I    F G   + +
Sbjct: 250 TYADGGHYLDFKCVKTQRQTQVPIGDDAYELIQ------PQTTDKYI----FSGF-NRTM 298

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              V Q +I++     G+    T H  RH++A+  L  G D+ ++Q +L H  +STTQIY
Sbjct: 299 TYRVMQDWIKEC----GINKHITFHCFRHTYASLQLELGTDIYTVQHLLNHKNVSTTQIY 354

Query: 299 TN 300
            +
Sbjct: 355 AS 356


>gi|315163811|gb|EFU07828.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1302]
          Length = 392

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 118/253 (46%), Gaps = 45/253 (17%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNM---RNLKKSNSLPRALN--EKQALTLVD-N 140
           SL+++L+ I    KY  K+ I +++ + N+   +  K    L R+LN  +++ LT+ +  
Sbjct: 136 SLRQTLNMI---FKYCVKKGILSDNPLTNVPMPKYQKSVTDLKRSLNSLDEKYLTIDELR 192

Query: 141 VLLHTS--HETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--------MDDQSTLRI 190
           +LL+ S  HE    +   + + Y+L+  G RISEAL+L  ++I           Q++++ 
Sbjct: 193 MLLNYSILHE----ELPLATLFYVLFYTGCRISEALALQKEDIDFENNEILFYKQTSVKG 248

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--------NLNIQLP-------LFRGI-- 233
           +    KI     + S R+ ++   DL    L        NLN Q+P       LF  +  
Sbjct: 249 KQIDFKIETTKSVSSARRVVVT--DLVMEKLLQLITVLDNLNSQVPFRVKENYLFVYLSP 306

Query: 234 --RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
             RG P        +I++     G+      H  RH+ A+ L++       ++  LGH  
Sbjct: 307 FKRGIPYRREYVNDHIKRCVERCGITKPFHTHLTRHTMAS-LVAQHCSWEVLKGRLGHAD 365

Query: 292 LSTTQIYTNVNSK 304
            ST++IY ++ S+
Sbjct: 366 KSTSEIYRHLTSE 378


>gi|329312769|gb|AEB87182.1| Transposase B [Staphylococcus aureus subsp. aureus T0131]
          Length = 609

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 106/259 (40%), Gaps = 31/259 (11%)

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS---GIKSFLKYLKKRKITTESNILNM 116
           +Q + QL+  EI A++S+     I   ++   +S   G+ S L  L+   + ++  I   
Sbjct: 238 VQRVHQLTRVEIEAYLSELNMMGIKPSTITGRISILEGLFSTLHRLEWDDVPSKLLIYPE 297

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              K   + PR ++E     +++ +  H     ++I    + +  ++  CG+RISE  +L
Sbjct: 298 DYPKIPRAKPRFIDE----FVLEQLNSHLDKLPEYI----ATMTMIVQECGMRISELCTL 349

Query: 177 TPQNIMDDQSTLRI----QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---- 228
               +++D+         Q K  K  IVP+   V   I    D       ++ + P    
Sbjct: 350 KKGCLLEDKDGDYFLKYYQWKMKKEHIVPISKEVVLLIKVRED------KVSEEFPDSEY 403

Query: 229 LFRGIRGKPLNPGVFQ------RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
           LF    G PL    F+       Y + +    G      AH  RH+  T +++NG     
Sbjct: 404 LFPRKDGSPLKQETFRGELNKLAYEQNIVDKSGEIYRFHAHAFRHTVGTRMINNGMPQHI 463

Query: 283 IQSILGHFRLSTTQIYTNV 301
           +Q  LGH     T  Y ++
Sbjct: 464 VQKFLGHESPEMTSRYAHI 482


>gi|314939813|ref|ZP_07847031.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|314941456|ref|ZP_07848346.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|314949549|ref|ZP_07852882.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
 gi|314992246|ref|ZP_07857685.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|314995374|ref|ZP_07860479.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|313590420|gb|EFR69265.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|313593214|gb|EFR72059.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|313599741|gb|EFR78584.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|313640909|gb|EFS05489.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|313644077|gb|EFS08657.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
          Length = 372

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS- 293
           G+ + P V +   R++     L LS   H+LRH+ AT LL NG  ++ I   LGH R+S 
Sbjct: 288 GELVTPSVVKWNTRRISN--ALSLSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISI 345

Query: 294 TTQIYTNVNSK 304
           T   Y++V  K
Sbjct: 346 TMDTYSHVTDK 356


>gi|315037971|ref|YP_004031539.1| phage integrase family site specific recombinase [Lactobacillus
           amylovorus GRL 1112]
 gi|312276104|gb|ADQ58744.1| phage integrase family site specific recombinase [Lactobacillus
           amylovorus GRL 1112]
          Length = 143

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 2/75 (2%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LF   +G  L P +  +++ QL +   LP   T H LRH++ T LL  G  +  +  +LG
Sbjct: 53  LFTNNKGGFLTPSMPGKWLIQLEKAYDLP-HVTPHGLRHTYGTLLLEAGTPITDVSKLLG 111

Query: 289 HFRLSTT-QIYTNVN 302
           H  +STT Q+Y +++
Sbjct: 112 HSSISTTMQVYIDLH 126


>gi|294619348|ref|ZP_06698812.1| phage integrase family protein [Enterococcus faecium E1679]
 gi|291594397|gb|EFF25810.1| phage integrase family protein [Enterococcus faecium E1679]
          Length = 378

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS- 293
           G+ + P V +   R++     L LS   H+LRH+ AT LL NG  ++ I   LGH R+S 
Sbjct: 294 GELVTPSVVKWNTRRISN--ALSLSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISI 351

Query: 294 TTQIYTNVNSK 304
           T   Y++V  K
Sbjct: 352 TMDTYSHVTDK 362


>gi|270293691|ref|ZP_06199893.1| integrase [Bacteroides sp. D20]
 gi|270275158|gb|EFA21018.1| integrase [Bacteroides sp. D20]
          Length = 370

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 14/146 (9%)

Query: 163 LYGC--GLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           L+ C   LRIS+ LSL    I+D  +  + +     K +   ++P   +A          
Sbjct: 223 LFSCLTSLRISDILSLQWHEIVDFAAGGKCVHTITQKTKTEDIIPISDEA---------- 272

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
            L L    P   G+  K L     Q  +++  R  G+  + T H+ R ++AT   + G D
Sbjct: 273 -LQLIGYSPEKTGLVFKGLKRSWTQHPMKEWIREAGITKNITFHSYRRTYATLQGAAGTD 331

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKN 305
           +R+IQS + H  ++TTQ Y  V   N
Sbjct: 332 IRTIQSNMAHRSITTTQRYMKVVDSN 357


>gi|239907848|ref|YP_002954589.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239797714|dbj|BAH76703.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 366

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 80/189 (42%), Gaps = 34/189 (17%)

Query: 116 MRNLKKSNSLPRALNEKQALTLVD--NVLLHTSHETKWIDARNSAILYLLYGCGLRI--S 171
           MR  +KS   PR +     LT+ D   ++       +W        + + +  G R   S
Sbjct: 180 MRGRRKSKEKPREIQ----LTVEDIKRIMECAESHIRWA-------MEVCFNLGTRPGES 228

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKI-RIVP----LLPSVRKAILEYYDLCPFDLNLNIQ 226
           E L+L  ++I  ++S  RI     K  RIVP    LL  +R  + E       D      
Sbjct: 229 ELLALKWEHIDFEKSVARIYASKTKTYRIVPISAKLLEKMRSRMAESTSGYVVD------ 282

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
              +RG R      G+ ++  R   +   +      + LRH FAT +LS G DL ++  +
Sbjct: 283 ---YRGER-----IGMIRKGFRGACQRANINYPVRMYDLRHLFATTMLSKGADLAAVSKL 334

Query: 287 LGHFRLSTT 295
           LGH  +STT
Sbjct: 335 LGHSMISTT 343


>gi|111017486|ref|YP_700458.1| tyrosine recombinase [Rhodococcus jostii RHA1]
 gi|110817016|gb|ABG92300.1| probable tyrosine recombinase [Rhodococcus jostii RHA1]
          Length = 350

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 68/161 (42%), Gaps = 21/161 (13%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR---------IQGKGDKIRIVPLLP 204
           AR+ A+   LY  G+R  E + L   ++   + T            +G G + R VP+L 
Sbjct: 170 ARDYALFRTLYHAGVRAEEVVMLDRGDVHFGRGTFGKLHVRFGKGAKGSGPRPRWVPMLD 229

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
            +   +  Y D      ++  + P    L     G  +     +  +R L    G P + 
Sbjct: 230 GLDLVLRWYLD------DVRGRFPDSSVLLCDESGGRMAAATIRNRLRHLMSVEGRPEAE 283

Query: 261 --TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
             + H +R + ATH    G DL +IQ +LGH+ +++T  Y 
Sbjct: 284 WFSPHGMRRACATHNYERGVDLVAIQQLLGHWTVASTMRYV 324


>gi|317481276|ref|ZP_07940347.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902609|gb|EFV24492.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 411

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 20/149 (13%)

Query: 160 LYLLYG-CGLRISEALSLTPQNI---MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYY 214
           LYL     GL  ++  +LT +NI    DD   + I + K   +  + LL   ++ + +Y 
Sbjct: 249 LYLFCAFTGLSFADMRNLTEENIRTYFDDHEWININRQKTGVVSNIRLLDIAKRIVDKYR 308

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY-IRQLRRYLGLPLSTTAHTLRHSFATHL 273
            LC                R  P+   +   Y IR + +  G+    T H  RH+ AT +
Sbjct: 309 GLCE-------------DGRIFPVPHYMTCLYGIRAVAKRCGITKHITWHQSRHTAATTV 355

Query: 274 -LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            LSNG  + ++ S+LGH  + TTQIY  +
Sbjct: 356 FLSNGVPIETVSSMLGHKSIKTTQIYAKI 384


>gi|294776405|ref|ZP_06741883.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294449731|gb|EFG18253.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 418

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 94/226 (41%), Gaps = 21/226 (9%)

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKK-----SNSLPRALNEKQALTLVDNVLL 143
           + +++ +++FL Y+ +R +  ++N    + L K     S  +P     ++   +++ +  
Sbjct: 175 EEAITKVRAFLFYMCERGLLPDNNPERWKELFKHRFLKSPKIPSVYTPQEVEAIINAIDR 234

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPL 202
            TS        R+ AI+ L    GLR S+   L   N+  ++      Q K  K   +PL
Sbjct: 235 TTSR-----GKRDYAIILLGARYGLRNSDIRGLRFCNLDWENNRLCFAQQKTGKRVTLPL 289

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP---GVFQRYIRQLRRYLGLPLS 259
              V  AI++Y       ++L      F+     P NP         I +     G+  +
Sbjct: 290 SEEVGMAIIDYIQHSRPKVDLPYVFLSFK----TPYNPLAKNAVANTITEWMHNAGVDFA 345

Query: 260 T---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           T    +H LRHS AT LLSN   L  I   LGH     T  Y  V+
Sbjct: 346 TRRHGSHILRHSLATSLLSNEVTLPVISETLGHSNSQVTTAYLRVS 391


>gi|167553904|ref|ZP_02347647.1| gp27 [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
 gi|205321766|gb|EDZ09605.1| gp27 [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
          Length = 349

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 90/223 (40%), Gaps = 55/223 (24%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE--KQALTLV 138
           +++G+ SL   L GI+ F      ++   E + L +  L +   L RA  +  K+ LT++
Sbjct: 151 RRLGEWSLPNPLDGIRVF------KEAEKEMSWLTLSQLPE---LFRACKQYGKEDLTMI 201

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             V L T                     G R  EA  LT   +   + T   + KG K R
Sbjct: 202 VKVCLAT---------------------GARWGEAERLTRPQLSPHKLTF-TKTKGKKNR 239

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR-RYLGLP 257
            VP+   +       YD          +L   +G   KP     +Q + + L+   + L 
Sbjct: 240 TVPIPKWL-------YD----------ELSERQGRMFKP----CYQEFKKMLKLTNIELT 278

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                H LRH+F  H + NGG++  +Q ILGH  +  T  Y +
Sbjct: 279 EGQKTHVLRHTFGAHFMMNGGNILVLQKILGHANIRETMKYAH 321


>gi|317057903|ref|YP_004106370.1| integrase family protein [Ruminococcus albus 7]
 gi|315450172|gb|ADU23736.1| integrase family protein [Ruminococcus albus 7]
          Length = 324

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 21/156 (13%)

Query: 159 ILYLLYGCGLRISEALSL-------TPQNIMDDQSTLRIQGKGD---KIRIVPLLPSVRK 208
           I+++L   GLR+ EAL+L       T + +    S   ++ +GD   K   +   P  R 
Sbjct: 148 IVFML-NTGLRVGEALALSWSDVDFTNKIVYVHNSVSSVKTRGDSSMKYEKIVNSPKSRN 206

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIR--------GKPLNPGVFQRYIRQLRRYLGL-PLS 259
           ++  Y  L    L+  +++    G          G  ++P    R + ++ +  G+    
Sbjct: 207 SV-RYVPLNKTALDALVKIHAIMGDNDRIVTTENGLLVDPSAIHRTMSRILKNCGINGKK 265

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
              H LRH+FAT LL  G D++ +  ILGH  +S T
Sbjct: 266 DIVHALRHTFATLLLRQGTDIKVVSEILGHSDISIT 301


>gi|291548403|emb|CBL21511.1| Site-specific recombinase XerC [Ruminococcus sp. SR1/5]
          Length = 98

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 18/98 (18%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           L  G   K + P   QR  ++L +   +P S   H+LRH+FAT     G D +++  ILG
Sbjct: 12  LLTGTNRKCMEPRNIQRKFQKLLQQCEIP-SINIHSLRHAFATRCTEMGFDSKTLSEILG 70

Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
           H  +  T               M+IY   H SI QK K
Sbjct: 71  HSSVKIT---------------MDIY--VHSSIKQKQK 91


>gi|288933663|ref|YP_003437722.1| integrase [Klebsiella variicola At-22]
 gi|288888392|gb|ADC56710.1| integrase family protein [Klebsiella variicola At-22]
          Length = 201

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 35/75 (46%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LF   +G PL+   F + I       GLPL    H LRHS    L + G D R IQ  LG
Sbjct: 107 LFLSRKGNPLSRQQFYQIIASSGDLAGLPLEIHPHMLRHSCGFALANMGIDTRLIQDYLG 166

Query: 289 HFRLSTTQIYTNVNS 303
           H  +  T  YT  N+
Sbjct: 167 HRNIRHTVWYTASNA 181


>gi|257887261|ref|ZP_05666914.1| phage integrase [Enterococcus faecium 1,141,733]
 gi|257823315|gb|EEV50247.1| phage integrase [Enterococcus faecium 1,141,733]
          Length = 378

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS- 293
           G+ + P V +   R++     L LS   H+LRH+ AT LL NG  ++ I   LGH R+S 
Sbjct: 294 GELVTPSVVKWNTRRISN--ALSLSFNFHSLRHTHATLLLENGAKMKEISDRLGHSRISI 351

Query: 294 TTQIYTNVNSK 304
           T   Y++V  K
Sbjct: 352 TMDTYSHVTDK 362


>gi|258612347|ref|ZP_05270117.2| DNA integration/recombination/invertion protein [Listeria
           monocytogenes F6900]
 gi|293596731|ref|ZP_05263903.2| DNA integration/recombination/invertion protein [Listeria
           monocytogenes J2818]
 gi|258611034|gb|EEW23642.1| DNA integration/recombination/invertion protein [Listeria
           monocytogenes F6900]
 gi|293591908|gb|EFG00243.1| DNA integration/recombination/invertion protein [Listeria
           monocytogenes J2818]
          Length = 393

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 72/325 (22%), Positives = 131/325 (40%), Gaps = 52/325 (16%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQT 62
           ++  EI     +   + W  N   +R L   T+  Y      ++I   ++  +KI+ I T
Sbjct: 61  SDYTEIKDMRFIDFVEKWRLNYA-KRELKGNTIDKYNLFLENWII--PYFERKKISKITT 117

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           ++ L Y        + + + +G  +L+     I+S  KY     IT     L+++  K +
Sbjct: 118 MQLLDY------FHEVQKKGVGPSALEGHHRVIRSLFKYATLWGITETDVSLSVK--KPT 169

Query: 123 NSLPRA--LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
             +P     N ++   L+D +        K +      ++ L   CGLR  E + LT ++
Sbjct: 170 YKVPEKNIYNRREIEVLIDRI--------KILQKYQQVMIKLALYCGLRRGEVIGLTTKD 221

Query: 181 IMDDQSTLRI---------------QGKGDKIRIVPLLPSVRKAILEYYD---------- 215
           +  +++T+ +               + K  + RIVP    + + I E             
Sbjct: 222 MNYNKNTINVYRAVIKSASEGIKLDETKNKRKRIVPAPAGLMQEIKELAKEKQKNKDKLG 281

Query: 216 ---LCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-YIRQLRRYLGLPLSTTA-HTLRHSFA 270
                  DL+    + +F    G P  P    R + R L +     L+  + H LRHS A
Sbjct: 282 LLWKGTKDLDGKTVVLIFSHDDGTPFTPASVTRMFNRFLEKEENNDLTKISFHDLRHSAA 341

Query: 271 THLLSNGGDLRSIQSILGHFRLSTT 295
           + LL  G +++ IQ+ILGH  +  T
Sbjct: 342 SFLLEQGINVKVIQNILGHSDIKVT 366


>gi|239907829|ref|YP_002954570.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239797695|dbj|BAH76684.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 366

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 80/189 (42%), Gaps = 34/189 (17%)

Query: 116 MRNLKKSNSLPRALNEKQALTLVD--NVLLHTSHETKWIDARNSAILYLLYGCGLRI--S 171
           MR  +KS   PR +     LT+ D   ++       +W        + + +  G R   S
Sbjct: 180 MRGRRKSKEKPREIQ----LTVEDIKRIMECAESHIRWA-------MEVCFNLGTRPGES 228

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKI-RIVP----LLPSVRKAILEYYDLCPFDLNLNIQ 226
           E L+L  ++I  ++S  RI     K  RIVP    LL  +R  + E       D      
Sbjct: 229 ELLALKWEHIDFEKSVARIYASKTKTYRIVPISAKLLEKMRSRMAESTSGYVVD------ 282

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
              +RG R      G+ ++  R   +   +      + LRH FAT +LS G DL ++  +
Sbjct: 283 ---YRGER-----IGMIRKGFRGACQRAKINYPVRMYDLRHLFATTMLSKGADLAAVSKL 334

Query: 287 LGHFRLSTT 295
           LGH  +STT
Sbjct: 335 LGHSMISTT 343


>gi|222080267|ref|YP_002540131.1| integrase/recombinase [Agrobacterium vitis S4]
 gi|221738912|gb|ACM39691.1| integrase/recombinase [Agrobacterium vitis S4]
          Length = 246

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 89/209 (42%), Gaps = 14/209 (6%)

Query: 29  RGLSKLTLQSYECDTRQFLIFL---AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           RG S  T+ SY    +  +I+L        EK+T+  I     T    ++  RR   +  
Sbjct: 21  RGASPNTVASYRDTFKLLVIYLRDQKAIPPEKLTLNRIDVEMITGFLNWLESRRQNSVST 80

Query: 86  RSLKRSLSGIKSFLKYLKKRK---ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           R+ +  L+ I SF  +++ ++   +    +I+ +   K + +    L  +Q        L
Sbjct: 81  RNQR--LAAISSFYNWMQSQEPALMARCQDIMAIPVKKGAQACVHHLTVEQT-----RCL 133

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVP 201
           L+    T     R++ IL  LY  G R+ E + LT +++ +   + + + GKG K R VP
Sbjct: 134 LNAPDRTTRSGRRDATILATLYDTGARVQELVDLTVRDVRLQKPAVITLTGKGRKTRHVP 193

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
           L  +    +  Y      D+      P+F
Sbjct: 194 LGANTAALLASYLTEFRLDMPGRDGYPVF 222


>gi|325680240|ref|ZP_08159802.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324108057|gb|EGC02311.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 390

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 92/212 (43%), Gaps = 34/212 (16%)

Query: 121 KSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           +++S PR AL EKQ    +D V     + +++ D      +++L+  G+RISE   LT  
Sbjct: 175 ENDSEPREALTEKQMNDYLDYVR-DDDYFSRYYDG-----IFILFNTGMRISEFCGLTVS 228

Query: 180 NIMDDQSTLRIQ--------GK--------GDKIRIVPLLPSVRKAILEYYDLCPFD--- 220
           +I  D+  + ++        GK           IR +P+   V +A              
Sbjct: 229 DIDFDEHRINVERQLIRTSSGKYIVQAPKTHSGIRFIPMTFEVEQAFRRVISSRRRVKSE 288

Query: 221 --LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR-RYLGLPLST----TAHTLRHSFATHL 273
             +   I   LF    G P     +Q+ ++++R +Y    L T    T H  RH+F T++
Sbjct: 289 PAVGGCIGF-LFLDKNGMPKLAMHWQKVMQRIREKYCHERLRTLPKITPHVCRHTFCTNM 347

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
              G + + +Q I+GH  +  T    N N+KN
Sbjct: 348 ARKGMNPKMLQYIMGHADVGVTIPVPNSNTKN 379


>gi|322384983|ref|ZP_08058635.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150178|gb|EFX43689.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 404

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 7/107 (6%)

Query: 197 IRIVPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           IR + L     K + ++   CP  +LNL    P  +GI    L P    + + +  +  G
Sbjct: 286 IRTIQLPEPTIKVMKQWKLECPANELNLLFPSPKTKGI----LYPNSLDKQLAKTIKGAG 341

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           +P   T H LRH+FAT LL +  + + +Q +LGH  + TT   Y++V
Sbjct: 342 VP-EITMHGLRHTFATTLLGSNVNPKIVQEMLGHATIKTTMDTYSHV 387


>gi|237723043|ref|ZP_04553524.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229447565|gb|EEO53356.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 403

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 18/159 (11%)

Query: 167 GLRISEALSLTPQNI---MDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           GL  ++  +L P++I    + +  +RI+  K D    +PL P +   ILE Y     D  
Sbjct: 251 GLAYADTRALHPRHIGTTSEGRRYIRIRRAKTDVEAFIPLHP-IAGQILELYKTTDDDR- 308

Query: 223 LNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
                P+F      PL    V    +  +   LG+  + + H  RHSF T  L+ G  + 
Sbjct: 309 -----PVF------PLPVRDVLWYEVHGMGVALGMKENLSYHMARHSFGTLTLTAGIPIE 357

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           SI  ++GH  + +TQ+Y  V  +     M  + ++  P+
Sbjct: 358 SIARMMGHTNIDSTQVYAQVTDRKISSDMNRLMERRKPA 396


>gi|209694569|ref|YP_002262497.1| phage integrase [Aliivibrio salmonicida LFI1238]
 gi|208008520|emb|CAQ78693.1| phage integrase [Aliivibrio salmonicida LFI1238]
          Length = 347

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 25/174 (14%)

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +E + LT+ +  LL T  E          I+ L    G R  E   LT   +   + T  
Sbjct: 173 SEMEFLTMDEMKLLITDAENYETHDDMHKIIKLCLATGGRFLEVSKLTGSQLSKYKVTF- 231

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
            Q KG K R VP+   +      Y ++   D       PLF+      +      R+I +
Sbjct: 232 TQTKGKKNRTVPISQDL------YAEIYKEDSG-----PLFK------IGYSTVYRFISK 274

Query: 250 LRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                 +P  T   AH +RH+FA++ + NGG++ ++Q ILGH  +  T  Y ++
Sbjct: 275 R-----VPRLTHQAAHVMRHTFASYYMMNGGNIIALQRILGHTDIKQTMRYAHL 323


>gi|317505706|ref|ZP_07963597.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
 gi|315663175|gb|EFV02951.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
          Length = 308

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 80/187 (42%), Gaps = 31/187 (16%)

Query: 148 ETKWIDARNSAILYLLYGC---GLRISEALSLTPQNIM---DDQSTLRIQ-GKGDKIRIV 200
           +T  ID +      L   C   GL   +   L P++I+   D    +RI+  K D   I+
Sbjct: 121 QTPIIDKQFERARQLFLFCAFTGLARVDMQRLKPKHIIRNADGTEEIRIKRQKTDVEAII 180

Query: 201 PLLPSVRKAILEYY------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           PLLP +   IL  Y      D   F  NL I+   F  +     N G   R  + L    
Sbjct: 181 PLLP-IAGQILSLYIKNKKADELIFP-NLTIRKASFACV-----NIGQICRIEKGL---- 229

Query: 255 GLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                 T H  RH+F+T + LSNG  + ++  +LGH  + TTQIY  +      + M  +
Sbjct: 230 ------TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQEDMTAL 283

Query: 314 YDQTHPS 320
            D+ H +
Sbjct: 284 ADREHSA 290


>gi|239623223|ref|ZP_04666254.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522189|gb|EEQ62055.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 278

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 28/151 (18%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I+ L+   G+R+SE ++   ++I  D+    I  KG+K+R +                 P
Sbjct: 127 IVRLITTTGVRVSELITFQIEDI--DRGHKDIYSKGNKMRRI---------------YVP 169

Query: 219 FDLNLNIQL----------PLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             L +  +            LF    G PL+P G+  ++     RY   P     H+ RH
Sbjct: 170 TQLGIEFKQWFQHIGRRSGHLFLNRFGSPLSPSGIRAQFKVFAARYHLDPEVMYPHSFRH 229

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            FA + +   GD+  +  +LGH  + TT+IY
Sbjct: 230 RFAKNFIEKCGDITLLSDLLGHESIETTRIY 260


>gi|167754018|ref|ZP_02426145.1| hypothetical protein ALIPUT_02306 [Alistipes putredinis DSM 17216]
 gi|167658643|gb|EDS02773.1| hypothetical protein ALIPUT_02306 [Alistipes putredinis DSM 17216]
          Length = 401

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 34/61 (55%)

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R LGL +  T +  RH+FAT L  +G ++  I   LGH  LSTTQIY +    +  D  M
Sbjct: 338 RLLGLKIELTTYVARHTFATVLKRSGVNIAIISESLGHSDLSTTQIYLDSFENSQIDAAM 397

Query: 312 E 312
           +
Sbjct: 398 Q 398


>gi|158422452|ref|YP_001523744.1| phage integrase [Azorhizobium caulinodans ORS 571]
 gi|158329341|dbj|BAF86826.1| phage integrase [Azorhizobium caulinodans ORS 571]
          Length = 384

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 105/247 (42%), Gaps = 34/247 (13%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKK 121
           I  +    I  F++ RR + + + +++R L  I S L + +       +  L+ MR LK+
Sbjct: 122 IADIDKDAINRFVAARRAEGVTNATIRRDLQAISSLLDFSEDEGWRDGNPALDKMRRLKE 181

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR----NSAILYLLYGCGLRISEALSLT 177
                            D ++L    +  ++ +R    ++ +L      G+R  E     
Sbjct: 182 HR---------------DPIMLPDDGDYAFVLSRLQEGHAEMLRAARATGMRQDELARAE 226

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
            ++     S+L ++GKG+K R + L  S   A +  +   P    +++  P      GKP
Sbjct: 227 RRHFNAANSSLLVRGKGNKQRTISL--SAEAAAI--FSRQP----VSLACPHIFHHAGKP 278

Query: 238 LNPGVF-----QRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           +    F     +R  ++  +  G+       H +RH +A   L +GGD+ +++  L H  
Sbjct: 279 ITKAAFIFSRARRAAQKAAQKAGMEFRGFRFHDMRHLYAVEFLRSGGDIYTLKEHLRHSS 338

Query: 292 LSTTQIY 298
           + TT++Y
Sbjct: 339 VKTTEMY 345


>gi|153809553|ref|ZP_01962221.1| hypothetical protein BACCAC_03871 [Bacteroides caccae ATCC 43185]
 gi|149127798|gb|EDM19022.1| hypothetical protein BACCAC_03871 [Bacteroides caccae ATCC 43185]
          Length = 116

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 18/110 (16%)

Query: 200 VPLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +P+LP V  +ILE Y     C   L     LP+    R           Y++++    GL
Sbjct: 4   IPVLP-VAASILEKYKNVAECTGKL-----LPVLSNQR--------MNSYLKEIADVCGL 49

Query: 257 PLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             +   H+ RHS+AT + L+NG  + ++  +LGH   S T+ Y  V  +N
Sbjct: 50  QKNLCTHSARHSYATSICLANGVSMENVAKMLGHADTSVTKHYARVLDQN 99


>gi|319428591|gb|ADV56665.1| integrase family protein [Shewanella putrefaciens 200]
          Length = 389

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 6/74 (8%)

Query: 229 LFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           +F+G+R     N  + Q  IR      G+    T H  RH+FA + L+ G D+ S+  +L
Sbjct: 300 VFKGLRYDSYSNVALVQWAIRA-----GITKHVTFHAGRHTFAVNQLARGLDIYSLSRLL 354

Query: 288 GHFRLSTTQIYTNV 301
           GH  L TT+IY ++
Sbjct: 355 GHSELRTTEIYADI 368


>gi|71910726|ref|YP_282276.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes
           MGAS5005]
 gi|71853508|gb|AAZ51531.1| recombinase [Streptococcus pyogenes MGAS5005]
          Length = 304

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 111/289 (38%), Gaps = 55/289 (19%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRT----------QKIGDRSLKRSLSGIKSFLKYLKKRKI 107
           I + T+  L+  ++ AF+   R           + +   ++ R+LS + S  KYL +   
Sbjct: 14  IDLSTLEHLTKKDLEAFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVE 73

Query: 108 TTESNILNMRNLKKSNS--------LPRALNEKQALTLVDNVLLHTSHETKWID------ 153
             +      RN+ K  S          RA N KQ L L D  L    +  K  +      
Sbjct: 74  NDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQKLFLGDETLAFLDYVDKEYEQKLSNR 133

Query: 154 ---------ARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVP 201
                     R+ AI+ LL   G+R+SEA++L  +++   M     +R  GK D + +  
Sbjct: 134 AKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDSVNVAG 193

Query: 202 LLPSVRKAIL---------EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
                 ++ L         E  DL  F       L  +RG+  + ++    ++ + +   
Sbjct: 194 FAKGYLESYLAVRQRRYKAEKQDLAFF-------LTEYRGVPNR-MDASSIEKMVGKYSE 245

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                +  T H LRH+ AT L         +   LGH     T +YT++
Sbjct: 246 --DFKIRVTPHKLRHTLATRLYDATKSQVLVSHQLGHSSTQVTDLYTHI 292


>gi|38637706|ref|NP_942680.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527044|gb|AAP85794.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 314

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 19/163 (11%)

Query: 161 YLLYG----CGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYD 215
           Y L+G     G+R+ EA +L  Q+I    + L I+G K  K R VP+  S  K + +Y  
Sbjct: 135 YCLFGLLSVSGMRLGEARNLELQDIDLTAAILTIRGAKLGKSRFVPMHASTCKVLADYIA 194

Query: 216 LCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH-----TLRHSF 269
                     +   LF   +G  L+ G   R+   L R +GL  +  +H      +RH F
Sbjct: 195 RRKRHWAGRPVSSYLFVSNQGNRLDSGEIHRHFYALSRQIGLRGAADSHGPRLHDMRHVF 254

Query: 270 ATHLL----SNGGD----LRSIQSILGHFRLSTTQIYTNVNSK 304
           AT+ L     +G D    L  + + LGH  ++ TQ Y N + +
Sbjct: 255 ATNTLLRWYRSGQDPERRLPILSAYLGHVHIADTQWYLNASPE 297


>gi|330958516|gb|EGH58776.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 321

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 106/254 (41%), Gaps = 34/254 (13%)

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           + A ++  R       +    ++ I+  +    +  + T   +L +R++K  +    A  
Sbjct: 72  VTALVATLREDDYAPNTTSLYVNAIRGVMNEAWRHDLITHDQLLKIRSIKPVSGTRLAKG 131

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
                TL+  ++   + + +    R++AI+ +LYG G+R SE+++L    I   + +LR+
Sbjct: 132 RNIRRTLIRELMETCAADPRPQGRRDAAIIAILYGSGMRKSESVNLDLAQIDFAERSLRV 191

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--RGKPLNPGVFQR--- 245
            GKG+            K +++Y     F   LN  L L R     G+  +P +F R   
Sbjct: 192 LGKGN------------KQLIKYAPEWAFRA-LNDWLELRRSCLQPGQGDDPFLFNRIRR 238

Query: 246 --------------YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
                         Y    +R   + ++   H  R SF T ++    DL   Q +  H  
Sbjct: 239 GSHITRERITKHAIYFIAKQRGREVGVNIMPHDFRRSFITRVIEE-YDLSIAQKLAHHTH 297

Query: 292 LSTTQIYTNVNSKN 305
           +STT  Y ++ S+N
Sbjct: 298 ISTTASY-DMRSEN 310


>gi|256840762|ref|ZP_05546270.1| integrase [Parabacteroides sp. D13]
 gi|256738034|gb|EEU51360.1| integrase [Parabacteroides sp. D13]
          Length = 189

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 10/82 (12%)

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRY----------LGLPLSTTAHTLRHSFATHLLSN 276
           L LF  + G+      ++ Y R L R+           G+ L  T++T+RHSFA+ L   
Sbjct: 80  LYLFPFLSGRRTGEAAYKEYNRTLSRFNHDLKLLARSTGVTLPVTSYTIRHSFASFLKEQ 139

Query: 277 GGDLRSIQSILGHFRLSTTQIY 298
              +  I  +LGH  + TTQIY
Sbjct: 140 DVSIEVISELLGHKSIKTTQIY 161


>gi|251778719|ref|ZP_04821639.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243083034|gb|EES48924.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 380

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 2/65 (3%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
           RY+ ++   + L +    H+LRH+ AT LL  G +++ IQ  LGH  LSTT  IY++V +
Sbjct: 301 RYLSKIVN-MELQIEFNFHSLRHTHATMLLEGGANIKDIQDRLGHSSLSTTMNIYSHVTN 359

Query: 304 KNGGD 308
           K   D
Sbjct: 360 KMKND 364


>gi|297581963|ref|ZP_06943883.1| site-specific recombinase XerD [Vibrio cholerae RC385]
 gi|297533830|gb|EFH72671.1| site-specific recombinase XerD [Vibrio cholerae RC385]
          Length = 389

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 6/74 (8%)

Query: 229 LFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           +F+G+R     N  + Q  IR      G+    T H  RH+FA + L+ G D+ S+  +L
Sbjct: 300 VFKGLRYDSYSNVALVQWAIRA-----GITKHVTFHAGRHTFAVNQLARGLDIYSLSRLL 354

Query: 288 GHFRLSTTQIYTNV 301
           GH  L TT+IY ++
Sbjct: 355 GHSELRTTEIYADI 368


>gi|324010159|gb|EGB79378.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 57-2]
          Length = 187

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 61/150 (40%), Gaps = 1/150 (0%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILEY 213
           RN  ++ + +  G R SE L L   +I      L I+   +      PLLP     I  +
Sbjct: 26  RNRCLIMMAFIHGFRASELLDLRLSDIDASGKQLNIRRIKNGFSTTHPLLPDEYNLIKLW 85

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                   N      LF   + +P++   F   IR+  +  GL +    H LRH+    L
Sbjct: 86  LKQRKLIENGVEGDWLFLSRKRRPISRQHFFSIIREAGKRAGLAVKAHPHMLRHACGFAL 145

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             NG D R +Q  LGH  +  T  YT  N+
Sbjct: 146 ADNGVDTRLLQDYLGHRNIQHTVRYTASNA 175


>gi|320107593|ref|YP_004183183.1| integrase family protein [Terriglobus saanensis SP1PR4]
 gi|319926114|gb|ADV83189.1| integrase family protein [Terriglobus saanensis SP1PR4]
          Length = 419

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY-TNVNSKNGG 307
           H  RH+FAT+ L +G D+R++QS LGH  +++T +Y   + SK+  
Sbjct: 361 HKFRHTFATNHLRDGVDIRTVQSWLGHRDINSTMVYLKGIRSKDAA 406


>gi|254517350|ref|ZP_05129407.1| phage integrase family protein [gamma proteobacterium NOR5-3]
 gi|219674188|gb|EED30557.1| phage integrase family protein [gamma proteobacterium NOR5-3]
          Length = 391

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 12/151 (7%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYY 214
           A+L+LL   G R+ EAL+    +I        +     K  K+R +PL   V   +L+  
Sbjct: 232 AVLWLL-ATGARVGEALAAEWPDIDRGNRVWVVHATNSKSKKLRSIPL-NDVALGVLDEL 289

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
              P          LF G RG PL  G   +    +R   GL  S T H LRHS A+ L+
Sbjct: 290 QTLP---RYQPGGRLFIGKRG-PL--GTINKVWYGIRDAAGLE-SFTLHCLRHSHASLLV 342

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           ++G  L  +Q +LGH     T  Y++++ ++
Sbjct: 343 NSGHSLYEVQRVLGHSDPKVTMRYSHLSQES 373


>gi|58616530|ref|YP_195659.1| putative integrase [Azoarcus sp. EbN1]
 gi|56315992|emb|CAI10635.1| putative integrase [Aromatoleum aromaticum EbN1]
          Length = 280

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 81/174 (46%), Gaps = 17/174 (9%)

Query: 47  LIFLAFYTEEKI----TIQTIRQLSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKY 101
           ++FL F  E ++     + T+  ++   I AF+    R +    RS    L+ ++SFLK+
Sbjct: 1   MLFLGF-AEARLGRSPALITLADITPELITAFLDHLERERHNSVRSRNARLAALRSFLKF 59

Query: 102 LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV---DNVLLHTSHETKWIDARNSA 158
              R +++      ++ ++ +  +P    E+  L  +   + + +  + +  W   R+  
Sbjct: 60  AAHRDVSS------LQVIEHALGVPAKRFERPMLGYLSREEMLAVIGTPDGTWFSQRDHV 113

Query: 159 ILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
           +L LLY  G R+SE   +    ++  D  + + + GKG K   VPL  S  +AI
Sbjct: 114 LLLLLYNTGARVSEIAGVKVGEVVLADGAACVHLHGKGRKQSSVPLWHSTVRAI 167


>gi|255011874|ref|ZP_05284000.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313149708|ref|ZP_07811901.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313138475|gb|EFR55835.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 363

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 13/147 (8%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           A L+ ++  GLR S+ L+L  +NI+       I+ +  K  ++  LP  + A        
Sbjct: 220 ACLFSIFT-GLRRSDILALRWENIVKRSHNTFIEIQCSKTGVLIRLPLSKPA-------- 270

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
              LN+ +      GI  + L   +   ++++     G+    T H  RH+FA  L   G
Sbjct: 271 ---LNV-LGKRKEEGIVFQSLTISILNLHVQKWLASAGITKHITFHCFRHTFAMLLQEKG 326

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSK 304
            ++ +I  +L H ++S+TQIY  V ++
Sbjct: 327 VEIYTISKLLAHKQVSSTQIYAKVTNQ 353


>gi|237733058|ref|ZP_04563539.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229383860|gb|EEO33951.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 286

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 103/244 (42%), Gaps = 39/244 (15%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS------NSLPRALNE--------- 131
           ++ + +  I+ F +Y  K+++T E   L    L KS      NS+  ALN+         
Sbjct: 27  TITKYIRDIEKFYQYADKKEVTKELVKLYKEELMKSYKPTSINSMLAALNQFFEYNGWLE 86

Query: 132 --KQALTLVDNVLLHTSHE-------------TKWIDARNSAILYLLYGCGLRISEALSL 176
              + L +   V L  S E              K  + R   +L  +   G+R+ E   +
Sbjct: 87  CKIKELKIQKRVFLEESKELSKDEYKRLVNAARKQKNERLYVLLQAICSTGIRVGEHRYI 146

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
           T Q + D  +  +I  KG K+R +     +++ +L+Y   C  +   N  + + R   G+
Sbjct: 147 TVQALKDGYA--QIYNKG-KVREIFFSDDLKRILLKY---CHKNKIENGAIFVTRS--GR 198

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           PL+     + ++ L     +  S    H LRH FA    +   D+  +  +LGH  + TT
Sbjct: 199 PLDRSNIWKAMKDLCDDAKVERSKVYPHNLRHLFAVTYYNLKKDIARLADLLGHSSMDTT 258

Query: 296 QIYT 299
           +IYT
Sbjct: 259 RIYT 262


>gi|222153062|ref|YP_002562239.1| site-specific tyrosine recombinase XerS [Streptococcus uberis
           0140J]
 gi|254799375|sp|B9DUD2|XERS_STRU0 RecName: Full=Tyrosine recombinase xerS
 gi|222113875|emb|CAR42035.1| tyrosine recombinase XerC [Streptococcus uberis 0140J]
          Length = 356

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 102/257 (39%), Gaps = 34/257 (13%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--------PRALNEKQA 134
           +   ++ R+LS + S  KYL +     +      RN+ K  +          RA N KQ 
Sbjct: 101 VSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVATKKKKETLASRAENIKQK 160

Query: 135 LTLVDNVL-----LHTSHETKWID----------ARNSAILYLLYGCGLRISEALSLTPQ 179
           L L D  +     +   +E K  +           R+ AI+ LL   G+R+SEA++L  +
Sbjct: 161 LFLGDETMEFLDYVDCEYENKLSNRAKSSFQKNKERDLAIIALLLASGVRLSEAVNLDLK 220

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGK 236
           ++      + +  KG K   V +  S  K  LE+Y       +  +   Q       RG 
Sbjct: 221 DVNLKMMVIEVTRKGGKRDSVNV-ASFAKPYLEHYLEIRQKRYKADKQDQAFFLTEYRGV 279

Query: 237 P--LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           P  ++    ++ + +  +     +  T H LRH+ AT L         +   LGH     
Sbjct: 280 PNRIDASSIEKMVGKYSQ--DFKIRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQV 337

Query: 295 TQIYTNV---NSKNGGD 308
           T +YT++     KN  D
Sbjct: 338 TDLYTHIVNDEQKNALD 354


>gi|330995740|ref|ZP_08319638.1| hypothetical protein HMPREF9442_00705 [Paraprevotella xylaniphila
           YIT 11841]
 gi|329574799|gb|EGG56360.1| hypothetical protein HMPREF9442_00705 [Paraprevotella xylaniphila
           YIT 11841]
          Length = 303

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 10/116 (8%)

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           +K+  ++ +  E     +   K+  +LP  L++++   ++D  +          D R   
Sbjct: 182 IKFYYEKVLGQERRCYKVNRAKREKTLPDVLSKEEIKKILDVTV---------TDLRFFC 232

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213
           +  +LY  GLRISE L L P +I +  S +R+ QGKG K R   L   + K + +Y
Sbjct: 233 MFSILYSAGLRISELLELKPGDINESLSLIRVRQGKGKKDRYTLLSRPLMKKLTKY 288


>gi|325568474|ref|ZP_08144841.1| bacteriophage integrase [Enterococcus casseliflavus ATCC 12755]
 gi|325158243|gb|EGC70396.1| bacteriophage integrase [Enterococcus casseliflavus ATCC 12755]
          Length = 394

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 78/171 (45%), Gaps = 25/171 (14%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLP----SVRKAIL 211
             +LL   G+R  EALSLT  +I  ++  L +     KG+  R +   P    S RK  L
Sbjct: 208 FFHLLAFTGIRRGEALSLTWNDINFEEKYLHVSKTLTKGENGRSLIHPPKTKASFRKIFL 267

Query: 212 E---------YYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYL----G 255
           +         + +L    LNL    P   LF   +   L P + + +++ + R+     G
Sbjct: 268 DNQTLNYLQTWKELQKEKLNLTFDNPRQLLFPNHKNSFLEPNIPKEWLQTIARHYKKNTG 327

Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
             L   T H  RH+ A+ L  +G +L+  Q  LGH  + TT  +YT+++ K
Sbjct: 328 KDLKIITIHGFRHTHASLLYLSGINLKEAQERLGHSNVKTTLNVYTHLSDK 378


>gi|291550115|emb|CBL26377.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 374

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 25/172 (14%)

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
           WID     +   L   GLR  EA +L   ++      + +    D I  V   P    ++
Sbjct: 193 WID-----LTKFLALSGLRFGEAAALLFDDVDIKNRVIHVTKNYDYINHVTTSPKTLTSL 247

Query: 211 LEYY---------------DLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQ-LRRY 253
            + Y                   F + ++N Q  LF    G+ +    + +Y R+   R 
Sbjct: 248 RDVYMQDELAVLCRKLKAASFATFAMQDMNAQKLLFCDSNGEHIKYYAYNKYFRENTLRV 307

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
           LG   + T H+LRH+ A+ LL  G D+ SI   LGH   + T +IY ++  K
Sbjct: 308 LGK--AYTVHSLRHTHASLLLEQGVDVDSISRRLGHSDSAVTREIYLHITKK 357


>gi|167753763|ref|ZP_02425890.1| hypothetical protein ALIPUT_02047 [Alistipes putredinis DSM 17216]
 gi|167658388|gb|EDS02518.1| hypothetical protein ALIPUT_02047 [Alistipes putredinis DSM 17216]
          Length = 401

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 34/61 (55%)

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R LGL +  T +  RH+FAT L  +G ++  I   LGH  LSTTQIY +    +  D  M
Sbjct: 338 RLLGLKIELTTYVARHTFATVLKRSGVNIAIISESLGHSDLSTTQIYLDSFENSQIDAAM 397

Query: 312 E 312
           +
Sbjct: 398 Q 398


>gi|160936304|ref|ZP_02083674.1| hypothetical protein CLOBOL_01197 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440773|gb|EDP18504.1| hypothetical protein CLOBOL_01197 [Clostridium bolteae ATCC
           BAA-613]
          Length = 366

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 31/179 (17%)

Query: 138 VDNVLLHTSHETK-WIDARNS-----AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI- 190
            D +L  T+ E K +I A  S      +  ++Y  GLR+ E L+LTP++I  D+  + + 
Sbjct: 165 ADEMLFWTNEEFKVFIKAMESRPVGYTVFMVMYYTGLRVGELLALTPEDIDFDRHIISVN 224

Query: 191 ---QGKGDKIRIVP----------LLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGK 236
              Q    K  I P          ++P V ++ L+ Y    +D+    ++ P  RG  G+
Sbjct: 225 KNYQHLNGKDYIYPPKTEAGYREVVMPKVLESCLKDYLAKLYDVQPTDRIFPYDRGWVGR 284

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            +  G      +++R           H +RH+ A+ L+  G     +   LGH R+ TT
Sbjct: 285 QMKYGCDHSGTQKIR----------VHDVRHTHASLLIDMGCTPLLVAERLGHERVQTT 333


>gi|28465853|dbj|BAC57471.1| transposase B [Staphylococcus aureus]
          Length = 630

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 114/282 (40%), Gaps = 32/282 (11%)

Query: 38  SYECDTRQFLI-FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS--- 93
           SY  D  Q L  F  F   +   +Q + QL+  EI A++S+     I   ++   +S   
Sbjct: 236 SYVSDIAQRLKEFFNFLDIKFKHVQRVHQLTRVEIEAYLSELNMMGIKPSTITGRISILE 295

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
           G+ S L  L+   + ++  I      K   + PR ++E     +++ +  H     ++I 
Sbjct: 296 GLFSTLHRLEWDDVPSKLLIYPEDYPKIPRAKPRFIDE----FVLEQLNSHLDKLPEYI- 350

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPSVRKA 209
              + +  ++  CG+RISE  +L    +++D+         Q K  K  IVP+   V   
Sbjct: 351 ---ATMTMIVQECGMRISELCTLKKGCLLEDKDGDFFLKYYQWKMKKEHIVPISKEVALL 407

Query: 210 ILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQ------RYIRQLRRYLGLPLS 259
           I    D       ++ + P    LF    G PL    F+       Y + +    G    
Sbjct: 408 IKVRED------KVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKSGEIYR 461

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             AH  RH+  T +++NG     +Q  LGH     T  Y ++
Sbjct: 462 FHAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHI 503


>gi|146295078|ref|YP_001185502.1| phage integrase family protein [Shewanella putrefaciens CN-32]
 gi|145566768|gb|ABP77703.1| phage integrase family protein [Shewanella putrefaciens CN-32]
          Length = 389

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 6/74 (8%)

Query: 229 LFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           +F+G+R     N  + Q  IR      G+    T H  RH+FA + L+ G D+ S+  +L
Sbjct: 300 VFKGLRYDSYSNVALVQWAIRA-----GITKHVTFHAGRHTFAVNQLARGLDIYSLSRLL 354

Query: 288 GHFRLSTTQIYTNV 301
           GH  L TT+IY ++
Sbjct: 355 GHSELRTTEIYADI 368


>gi|227540358|ref|ZP_03970407.1| phage integrase family protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227239682|gb|EEI89697.1| phage integrase family protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 405

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 30/155 (19%)

Query: 161 YLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI-----------VPLLPSVR 207
           + L+ C  GL  ++   L P +I       RI   G+   I           +PLLP V 
Sbjct: 248 FFLFSCYTGLSYADVQKLKPADI-------RIGADGEPWIITYRQKTNTRAAIPLLP-VA 299

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           K IL+ Y   P  +N    LP+    +           Y+ ++    G+  +      + 
Sbjct: 300 KKILDRYKDHPMCINKGKALPISSNQK--------MNEYLIEIAALAGVDKTLGNRIAKR 351

Query: 268 SFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +FAT + L NG  + S+  +LGH  L TTQ+Y  +
Sbjct: 352 TFATTVTLMNGVPIESVSKMLGHTNLRTTQLYAKI 386


>gi|298531211|ref|ZP_07018611.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508821|gb|EFI32727.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 394

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           F     ++R+  G+P     H LRH+FA+ L+++G  L  +Q +LGH  +STTQ Y ++
Sbjct: 308 FHNTWDRVRKNAGIP-DVRIHDLRHNFASLLVNSGRSLYEVQKLLGHSNISTTQRYAHL 365


>gi|126667752|ref|ZP_01738720.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126627855|gb|EAZ98484.1| integrase/recombinase [Marinobacter sp. ELB17]
          Length = 163

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 26/129 (20%)

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILE---YYDLCPFDLNLNIQLPLFRGIRGKPLN----P 240
           +R+ GKG K R+ PL     +A+L      D  P          +F   +G+PL      
Sbjct: 9   VRLHGKGKKDRLCPLWRDTAQALLRLPTVRDGAPGAF-------VFVNRQGQPLTRDGAA 61

Query: 241 GVFQRYIRQLRRYLGLPLSTT-------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            + Q+Y+        +P + T        H LRHS A  LL +G D+  I+  LGH  ++
Sbjct: 62  YLLQKYV-----VAAIPTAPTLQRRKITPHVLRHSCAVALLQSGVDVTVIRDYLGHASIA 116

Query: 294 TTQIYTNVN 302
           TT  Y   N
Sbjct: 117 TTSRYLTTN 125


>gi|47097559|ref|ZP_00235093.1| site-specific recombinase, phage integrase family, putative
           [Listeria monocytogenes str. 1/2a F6854]
 gi|254900896|ref|ZP_05260820.1| DNA integration/recombination/invertion protein [Listeria
           monocytogenes J0161]
 gi|47014070|gb|EAL05069.1| site-specific recombinase, phage integrase family, putative
           [Listeria monocytogenes str. 1/2a F6854]
          Length = 387

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 72/325 (22%), Positives = 131/325 (40%), Gaps = 52/325 (16%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQT 62
           ++  EI     +   + W  N   +R L   T+  Y      ++I   ++  +KI+ I T
Sbjct: 55  SDYTEIKDMRFIDFVEKWRLNYA-KRELKGNTIDKYNLFLENWII--PYFERKKISKITT 111

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           ++ L Y        + + + +G  +L+     I+S  KY     IT     L+++  K +
Sbjct: 112 MQLLDY------FHEVQKKGVGPSALEGHHRVIRSLFKYATLWGITETDVSLSVK--KPT 163

Query: 123 NSLPRA--LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
             +P     N ++   L+D +        K +      ++ L   CGLR  E + LT ++
Sbjct: 164 YKVPEKNIYNRREIEVLIDRI--------KILQKYQQVMIKLALYCGLRRGEVIGLTTKD 215

Query: 181 IMDDQSTLRI---------------QGKGDKIRIVPLLPSVRKAILEYYD---------- 215
           +  +++T+ +               + K  + RIVP    + + I E             
Sbjct: 216 MNYNKNTINVYRAVIKSASEGIKLDETKNKRKRIVPAPAGLMQEIKELAKEKQKNKDKLG 275

Query: 216 ---LCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-YIRQLRRYLGLPLSTTA-HTLRHSFA 270
                  DL+    + +F    G P  P    R + R L +     L+  + H LRHS A
Sbjct: 276 LLWKGTKDLDGKTVVLIFSHDDGTPFTPASVTRMFNRFLEKEENNDLTKISFHDLRHSAA 335

Query: 271 THLLSNGGDLRSIQSILGHFRLSTT 295
           + LL  G +++ IQ+ILGH  +  T
Sbjct: 336 SFLLEQGINVKVIQNILGHSDIKVT 360


>gi|260642507|ref|ZP_05859421.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|260621741|gb|EEX44612.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 132

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 9/121 (7%)

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R QGK     +V LLP   + I  Y     F  + +   P+         N    +  ++
Sbjct: 4   RQQGKDQAAYVVKLLPIAVELIERYKGDDKFKDSPDKVFPVG--------NLECMEDSLK 55

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN-VNSKNGG 307
           ++       +  + H  RH+FAT  LS G  L ++Q +LGH  + +TQ+Y   +N K G 
Sbjct: 56  RIGEKAECSIRLSPHLARHTFATLALSKGMPLETLQKVLGHKTIISTQVYAGLINPKIGE 115

Query: 308 D 308
           D
Sbjct: 116 D 116


>gi|163785285|ref|ZP_02179942.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879446|gb|EDP73293.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 324

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 69/148 (46%), Gaps = 17/148 (11%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLC 217
           +  L    G+R+ E   L  ++I  +++ ++++  K  + R++P+ P +R          
Sbjct: 183 VFRLFVYTGMRLGEIHKLRWKHIDLNRNVIKVEKTKTFQSRVIPIHPKLRA--------- 233

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
                L  + P    +   P      +  ++   +  G       H LRH+FA+ ++  G
Sbjct: 234 ----ELEARTPAMGKVV--PYAKPTIEHKLKNCFKKAGFK-DLRIHDLRHTFASLMVMAG 286

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            DL+++Q +LGH    TT+IY +++ ++
Sbjct: 287 VDLKTVQELLGHQSYRTTEIYAHLSPQH 314


>gi|256027818|ref|ZP_05441652.1| hypothetical protein PrD11_07451 [Fusobacterium sp. D11]
 gi|289765771|ref|ZP_06525149.1| predicted protein [Fusobacterium sp. D11]
 gi|289717326|gb|EFD81338.1| predicted protein [Fusobacterium sp. D11]
          Length = 339

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 75/150 (50%), Gaps = 11/150 (7%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           +D R +  L ++   G+RI E LSLT  +I+++   +R       IR VP+   + K I+
Sbjct: 186 LDNRIAKALCVMIYTGMRIDEFLSLTKNDILNNFIYVREAKTEAGIRPVPIHNRI-KPII 244

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           +++     +        L+     K  +   F+  + +L + LG P   T H  RH+FA+
Sbjct: 245 DFFLAEKKEY-------LYTWKENKKASYETFRNNMIKLMKELGTP--HTPHDTRHTFAS 295

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQ-IYTN 300
            +   G +  ++ +++GH  ++ T+ IYT+
Sbjct: 296 MMNKVGANDVALTTMIGHTDVNLTKSIYTH 325


>gi|152971804|ref|YP_001336913.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150956653|gb|ABR78683.1| recombinase involved in phase variation; regulator for fimA
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 201

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 35/75 (46%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LF   +G PL+   F + I       GLPL    H LRHS    L + G D R IQ  LG
Sbjct: 107 LFLSRKGNPLSRQQFYQIIASSGGLAGLPLEIHPHMLRHSCGFALANMGIDTRLIQDYLG 166

Query: 289 HFRLSTTQIYTNVNS 303
           H  +  T  YT  N+
Sbjct: 167 HRNIRHTVWYTASNA 181


>gi|154500802|ref|ZP_02038840.1| hypothetical protein BACCAP_04487 [Bacteroides capillosus ATCC
           29799]
 gi|150270302|gb|EDM97628.1| hypothetical protein BACCAP_04487 [Bacteroides capillosus ATCC
           29799]
          Length = 409

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQI 297
           +P    R  R+L    G+      H LRH+FAT  LS+G D++++ S+LGH+    T   
Sbjct: 301 SPDAVSRINRKLLAKAGIEERVRFHDLRHTFATMALSSGVDVKTLSSMLGHYSAGFTLDT 360

Query: 298 YTNV 301
           YT++
Sbjct: 361 YTHI 364


>gi|227892022|ref|ZP_04009827.1| integrase family protein [Lactobacillus salivarius ATCC 11741]
 gi|227866132|gb|EEJ73553.1| integrase family protein [Lactobacillus salivarius ATCC 11741]
          Length = 309

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 79/177 (44%), Gaps = 18/177 (10%)

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           LN+ +   LV    L+ S E  W        +YL+   GLR +EAL+LTP +       +
Sbjct: 117 LNKNELEALVHE--LNLSSEINW-----DWFIYLVSKTGLRFAEALALTPSDFDYKNKQI 169

Query: 189 RIQGKGD-KIRIVPLLP-----SVRKAILEYYDLCPF-DLNL--NIQLPLFRGIRGKPLN 239
            +    + K +     P     S RK  ++   L  F  LN   +   P+F     K  N
Sbjct: 170 IVNKSWNYKFKDYGFQPTKNKSSNRKVFVDDNTLKAFRKLNKRKDPNQPIFVSKGQKIFN 229

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
             V  R +  L ++  +P + + H LRH+ A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 230 STVNSR-LETLCKHANIP-TISIHGLRHTHASLLLFQGVSVLSVSQRLGHANVTTTQ 284


>gi|330011068|ref|ZP_08306980.1| type 1 fimbriae regulatory protein FimB [Klebsiella sp. MS 92-3]
 gi|158267620|gb|ABW24951.1| FimB [Klebsiella pneumoniae]
 gi|257479867|gb|ACV60170.1| FimB [Klebsiella pneumoniae]
 gi|328534299|gb|EGF60912.1| type 1 fimbriae regulatory protein FimB [Klebsiella sp. MS 92-3]
          Length = 209

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 35/75 (46%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LF   +G PL+   F + I       GLPL    H LRHS    L + G D R IQ  LG
Sbjct: 115 LFLSRKGNPLSRQQFYQIIASSGGLAGLPLEIHPHMLRHSCGFALANMGIDTRLIQDYLG 174

Query: 289 HFRLSTTQIYTNVNS 303
           H  +  T  YT  N+
Sbjct: 175 HRNIRHTVWYTASNA 189


>gi|159046239|ref|YP_001541911.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|159046543|ref|YP_001542213.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|157913998|gb|ABV95430.1| phage integrase [Dinoroseobacter shibae DFL 12]
 gi|157914302|gb|ABV95732.1| phage integrase [Dinoroseobacter shibae DFL 12]
          Length = 303

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 67/149 (44%), Gaps = 15/149 (10%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           LL   GLRISEALSL   ++  +   +R  GK  K R+VP+  S R A+  Y +      
Sbjct: 134 LLASTGLRISEALSLQCDDLTAEGLMVR-SGKFGKSRLVPIHFSTRAALERYLEARAAVR 192

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA----HTLRHSFATHLLSNG 277
           N N  L    G    P        ++R +R+ LG    T      H LRH+FA   L   
Sbjct: 193 NANDDL-FVLGHGHAPTKTRAHVVFVRIVRK-LGYRNPTGPGPRLHDLRHTFAVRSLEAC 250

Query: 278 GD--------LRSIQSILGHFRLSTTQIY 298
           G+        ++++ + LGH  ++ T  Y
Sbjct: 251 GNNPQAVLRHMKALSTYLGHVDIANTYWY 279


>gi|331697728|ref|YP_004333967.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|331698613|ref|YP_004334852.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|331699771|ref|YP_004336010.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326952417|gb|AEA26114.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326953302|gb|AEA26999.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326954460|gb|AEA28157.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
          Length = 362

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 23/166 (13%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL---------RIQGKGDKIRIVPLLP 204
           AR+ A+   LY  GLR  EA  L   ++  ++              +  G + R VP+L 
Sbjct: 170 ARDYALFRTLYHAGLRSEEASLLDVADVHFNRGPFGKLHVRFGKAARTSGPRPRWVPMLD 229

Query: 205 SVRKAILEYYDLCPFDLN-LNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
            +   +L ++      LN +  + P    LF    G  L+ G  +  +R+L    G    
Sbjct: 230 GL-DLVLRWF------LNDVRGKFPDSPVLFADESGGSLHRGTIRNRLRRLMELEGRAAG 282

Query: 260 T--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              + H LR + ATH    G DL +IQ +LGH+ +S+T  Y   ++
Sbjct: 283 EWFSPHALRRACATHNYERGVDLVAIQQLLGHWTVSSTMRYVRPSA 328


>gi|299145293|ref|ZP_07038361.1| integrase [Bacteroides sp. 3_1_23]
 gi|298515784|gb|EFI39665.1| integrase [Bacteroides sp. 3_1_23]
          Length = 409

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 13/113 (11%)

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP------GVFQRYIRQLR---RYLGL 256
           V+  +     L P  + L   +  ++G+  + ++P      G +Q  +  L+   +  G 
Sbjct: 284 VKTGVAYVVKLLPIAIEL---IEKYKGVNERKISPEHVFPVGEYQALLSSLKYIGKKCGC 340

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN-VNSKNGGD 308
            +  T H  RH+FA   +  G  L ++Q +LGH  + +TQIY   +N K G D
Sbjct: 341 KVEVTPHIGRHTFAVLAILKGMPLETLQKVLGHNSILSTQIYAELINPKVGED 393


>gi|293556237|ref|ZP_06674827.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1039]
 gi|291601656|gb|EFF31918.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1039]
          Length = 378

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS- 293
           G+ + P V +   R++     L LS   H+LRH+ AT LL NG  ++ I   LGH R+S 
Sbjct: 294 GELVTPSVVKWNTRRISN--ALSLSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISI 351

Query: 294 TTQIYTNVNSK 304
           T   Y++V  K
Sbjct: 352 TMDTYSHVTDK 362


>gi|289423763|ref|ZP_06425558.1| integrase family protein [Peptostreptococcus anaerobius 653-L]
 gi|289155802|gb|EFD04472.1| integrase family protein [Peptostreptococcus anaerobius 653-L]
          Length = 377

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 128/308 (41%), Gaps = 42/308 (13%)

Query: 30  GLSKLTLQSYECDTRQFLIFL---AFYTEEK----ITIQTIRQLSYTEIRAFI------- 75
            +S  T ++Y  D + FL +L     YT  K    I+I   +++   +I  FI       
Sbjct: 47  AVSVTTRRAYLMDIKFFLDYLIDTDLYTSAKSVSDISIDDFKEIGARDINLFIGDYCNRY 106

Query: 76  -----SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
                + R   +  ++SL R  S + +  K+L + +            +K     P A+ 
Sbjct: 107 YKNVNNDRVLYENNNKSLARKKSSLSTMFKFLFRNEQLDTDITSGFNPIKLPKPQPDAIK 166

Query: 131 E---KQALTLVDNVL----LHTSHETKWIDA--RNSAILYLLYGCGLRISEALSLTPQNI 181
                +   +++ V     L    +  W+    R+ AIL L    GLR++E   L   + 
Sbjct: 167 RLEIDEVAIMLEAVETGNGLTDKEKDYWLKTKKRDRAILVLFITYGLRLNELRELNISSF 226

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFD--LNLNIQLPLFRGIRGKPL 238
              +    I  K  K  ++P+  +    + +Y +   P D  ++   Q  LF  ++ K +
Sbjct: 227 NFSRGEFMIYRKRGKEVLMPINKACETVVKDYIENERPSDDEISEEYQDALFLSLQKKRM 286

Query: 239 NPGVFQRYIRQL-RRYLGLPLSTT------AHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
                 R IR L ++Y  + ++T+       H LR + AT L+  G  +  +Q+++ H  
Sbjct: 287 TA----RSIRDLVKKYTAIGMNTSRSKGYSPHKLRATAATSLIETGFSIYDVQNLMDHDN 342

Query: 292 LSTTQIYT 299
           ++TTQ+Y 
Sbjct: 343 VTTTQLYA 350


>gi|260559989|ref|ZP_05832167.1| phage integrase [Enterococcus faecium C68]
 gi|260073824|gb|EEW62148.1| phage integrase [Enterococcus faecium C68]
          Length = 249

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS- 293
           G+ + P V +   R++     L LS   H+LRH+ AT LL NG  ++ I   LGH R+S 
Sbjct: 165 GELVTPSVVKWNTRRISN--ALSLSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISI 222

Query: 294 TTQIYTNVNSK 304
           T   Y++V  K
Sbjct: 223 TMDTYSHVTDK 233


>gi|110640587|ref|YP_668315.1| putative phage integrase [Escherichia coli 536]
 gi|300977187|ref|ZP_07173776.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 200-1]
 gi|110342179|gb|ABG68416.1| putative phage integrase [Escherichia coli 536]
 gi|300308376|gb|EFJ62896.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 200-1]
 gi|324010960|gb|EGB80179.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 60-1]
          Length = 187

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 61/150 (40%), Gaps = 1/150 (0%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILEY 213
           RN  ++ + +  G R SE L L   +I      L I+   +      PLLP     I  +
Sbjct: 26  RNRCLIMMAFIHGFRASELLDLRLSDIDASGKQLNIRRIKNGFSTTHPLLPDEYNLIKLW 85

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                   N      LF   + +P++   F   IR+  +  GL +    H LRH+    L
Sbjct: 86  LKQRKLIENGVEGDWLFLSRKRRPISRQHFFSIIREAGKRAGLAVKAHPHMLRHACGFAL 145

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             NG D R +Q  LGH  +  T  YT  N+
Sbjct: 146 ADNGVDTRLLQDYLGHRNIQHTVRYTASNA 175


>gi|313605682|gb|EFR83057.1| phage integrase family protein [Listeria monocytogenes FSL F2-208]
          Length = 309

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 13/147 (8%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-KIRIVPLLP-----SVRKAILE 212
            + L+   GLR SEAL+LTP +       + I    D K+      P     S RK  ++
Sbjct: 141 FILLIIKTGLRFSEALALTPSDFDFSTQKISINKTWDYKMVTGSFQPTKNESSNRKIQID 200

Query: 213 YYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +     F   + ++    P+F  ++ +  N  +  R ++ L     +P + T H+LRH+ 
Sbjct: 201 WQLAMQFSQLIKMKDSDKPIF--VKSRVFNSTINNR-LKVLCENANIP-TITVHSLRHTH 256

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           A+ LL  G  + S+ + LGH  ++TTQ
Sbjct: 257 ASLLLFAGVSIASVANRLGHSSMTTTQ 283


>gi|229061589|ref|ZP_04198932.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus AH603]
 gi|228717710|gb|EEL69361.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus AH603]
          Length = 362

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 37/159 (23%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQ-------GKGD--------KIRIVPLLPSVRKAIL 211
           G+RI E L+L   +I  +  T+ +Q       GK +          RI+P+   +   +L
Sbjct: 184 GMRIGEVLALKWNDINFENKTIHVQRTLTLVDGKYELGETKTEASNRIIPMTEELMGELL 243

Query: 212 EY--------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           EY        +DL     N  I  P     + K L   +   YIR              H
Sbjct: 244 EYQNHKKENSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYIR-------------FH 290

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
            +R +F T L+ +G + + +  +LGH  +STT  IYT+V
Sbjct: 291 DIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDV 329


>gi|330814772|ref|YP_004362947.1| integrase family protein [Burkholderia gladioli BSR3]
 gi|327374764|gb|AEA66115.1| integrase family protein [Burkholderia gladioli BSR3]
          Length = 711

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 73/201 (36%), Gaps = 52/201 (25%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--------LRIQGKGDKIRIVPLLPS 205
           AR   +L   Y  GLR +E       ++ +  +         LR+ GK  K R VPL+P+
Sbjct: 494 ARMRFVLGFAYSTGLRRAELCGAFTDDVQERYAGAELGTIRLLRVVGKRAKERFVPLVPA 553

Query: 206 VRKAILEYYD---------LCPFDLNL------NIQLPLFR--------------GIRGK 236
           V   + +Y            CP    L      N ++   R                R +
Sbjct: 554 VLDLMGDYLASRGLPRDPLACPAATPLIPALLSNTEIGQIRRAAKANHSDPAPELAARAR 613

Query: 237 ---PLNPGVFQRYIRQLRRYLGLPL------------STTAHTLRHSFATHLLSNGGDLR 281
              P++P    + I+Q                     + + H LRH+F +H L+NG  L 
Sbjct: 614 QTGPIHPVQLYKAIKQFFATATAAALREDSPHARDFSAASPHWLRHTFVSHALANGMSLE 673

Query: 282 SIQSILGHFRLSTTQIYTNVN 302
           S ++  GH  L TT IY    
Sbjct: 674 SARNFAGHDSLDTTSIYATAE 694


>gi|315034182|gb|EFT46114.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0027]
          Length = 331

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 86/192 (44%), Gaps = 13/192 (6%)

Query: 132 KQALTLVD-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           K+A T  D + LL     + + + R++  + L++  G+RI+    L  ++I  ++  L +
Sbjct: 140 KEAATQEDIDRLLRILDLSNYYEFRDACAVLLMFQTGIRINTLSQLENKHINFERKCLIL 199

Query: 191 QG---KGDKIRIVPLLPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRG----KPLNP 240
            G   K  K+ I+P+   V + I   ++  +L     N+   L +F    G    K    
Sbjct: 200 DGSIMKNHKLSILPISDEVLQMIVTLIKQNNLIRESKNVENSL-IFITYEGTSIQKSDKS 258

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              +R + Q  +   +P +   H LR  FAT+LL  G  +  I   LGH  L TT  Y  
Sbjct: 259 NAIRRRLGQYSKDFAIP-NINPHGLRRGFATNLLKKGASVPLISKALGHADLETTSRYLY 317

Query: 301 VNSKNGGDWMME 312
           ++S    + + E
Sbjct: 318 LDSTEAANELRE 329


>gi|291541569|emb|CBL14679.1| Site-specific recombinase XerD [Ruminococcus bromii L2-63]
          Length = 399

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 7/67 (10%)

Query: 241 GVFQRYIRQLRRYL---GLPLST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G F  Y RQ +      G+P      TAH+LRH+ AT+LL  G +L  +Q  LGH + ST
Sbjct: 303 GDFSDYERQPKSKYDPKGVPFVIDRFTAHSLRHTCATNLLYTGHELHYVQKQLGHAKPST 362

Query: 295 T-QIYTN 300
           T  IYT+
Sbjct: 363 TLDIYTH 369


>gi|134045675|ref|YP_001097161.1| phage integrase family protein [Methanococcus maripaludis C5]
 gi|132663300|gb|ABO34946.1| phage integrase family protein [Methanococcus maripaludis C5]
          Length = 321

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 62/153 (40%), Gaps = 10/153 (6%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R++  L LL+  G R+SE   LT       +   ++     K     +       +L YY
Sbjct: 156 RDATFLRLLWDTGCRVSEVAELTYSACDLKKGVFKLTNTKTKRERTVVCSKETLKLLNYY 215

Query: 215 -----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST--TAHTLRH 267
                D  P D         + GI  K      F   + +L+R   +P +     H+LRH
Sbjct: 216 LQHQGDQGPDDYLFK---SAYDGIINKRQLGEKFVGIVNELKREGSVPENKWLVLHSLRH 272

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             A +LL  G  L  ++  LGH  + TT IY++
Sbjct: 273 GRAVNLLDKGVPLDVVKEYLGHTSIETTMIYSH 305


>gi|160936350|ref|ZP_02083719.1| hypothetical protein CLOBOL_01242 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440633|gb|EDP18371.1| hypothetical protein CLOBOL_01242 [Clostridium bolteae ATCC
           BAA-613]
          Length = 305

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 112/285 (39%), Gaps = 70/285 (24%)

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           ++YT +  F+   + ++  D ++ +    ++ FL++L KR+I  E  ++  R    S   
Sbjct: 3   MAYT-VEQFLDFLKEEEKSDATISKYTYELQMFLQFLGKREIGKEL-MIQYRTYLSSRYR 60

Query: 126 PRALNEKQALTLVDNVLLHTS---HETKWIDARNSAIL---------------------- 160
           P+ +N K  L+ V+  L  T    +  K++  +  A +                      
Sbjct: 61  PQTVNGK--LSAVNAFLKFTGLYEYRVKFLKVQRRAYIDETRELTQKEYERLMETAGRQG 118

Query: 161 -YLLY-------GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
            Y LY         G+R+SE   +T + +M  ++ + ++GK                   
Sbjct: 119 KYQLYYLMMTICSTGIRVSELRYVTVEAVMRGKAEIFMKGK------------------- 159

Query: 213 YYDLCPFDLNLNIQLPLF---RGIR---------GKPLNPGVFQRYIRQLRRYLGLPLST 260
            Y +  F  NL  QL  F    GIR         G+PL+       +++L    G+    
Sbjct: 160 -YRIVIFPKNLAAQLKAFARKNGIRSGSLFCTRSGRPLDRSNICHAMKKLCAKAGVKKDK 218

Query: 261 T-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              H  RH FA    +   ++  +  ILGH  + TT+IY   + K
Sbjct: 219 VFPHNFRHLFARSFYAAEKNMAHLADILGHSSIETTRIYVAASIK 263


>gi|118577353|ref|YP_899593.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
 gi|118504858|gb|ABL01340.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
          Length = 318

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 97/224 (43%), Gaps = 42/224 (18%)

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV-LLHTSHETKWIDAR 155
            F K  KK  I +ESN             P ALNE     L++ +  +  +   +  + R
Sbjct: 106 DFEKMFKKMNIKSESN-----------EKP-ALNEDDVQRLLNYLEKIKRARRNQNTNIR 153

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIM----DDQSTLRIQGKGDKIRIVPL--------L 203
           N+ +  ++   GLR  E   L  ++++    DD  +L I+GKG K R V +        +
Sbjct: 154 NTLLCKIMLFGGLRAVELTHLRLKDMVYDKEDDIYSLLIEGKGGKQRTVYIPRTLIEDEV 213

Query: 204 PSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            ++++   E + +C   +  +  +  L++ I G     GV                 T  
Sbjct: 214 ETLKEEYGEEWLICSTRNGTIVDRTNLYQIITGIYKRAGVDH---------------TGL 258

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKN 305
           H LRH+FA  L++N  +L +I+ +LGH  ++ T + Y   N  N
Sbjct: 259 HILRHTFARRLVNNNTNLETIRDLLGHSNIAITAKFYAKTNENN 302


>gi|325271013|ref|ZP_08137599.1| hypothetical protein HMPREF9141_2809 [Prevotella multiformis DSM
           16608]
 gi|324986659|gb|EGC18656.1| hypothetical protein HMPREF9141_2809 [Prevotella multiformis DSM
           16608]
          Length = 334

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 20/150 (13%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMD----DQSTLRIQGKGDKIRI--VPLLPSVRKAIL 211
             L+ +Y  GLR S+ +++T Q++ +        +R+Q    ++RI    +      A++
Sbjct: 184 GFLFSVYS-GLRFSDIVNVTKQHVKNIYRNKWVVMRMQKTDHEVRIPISKMFGGKAAAMV 242

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           +        L    QLP     R   +   V +R+   + R++      T H  RH+ AT
Sbjct: 243 QENKTTTGKL---FQLPC--NARCNLVLKRVLKRF--NIHRHI------TFHCARHTCAT 289

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            LLS G  L  IQ ILGH  + TTQ+Y+ V
Sbjct: 290 VLLSKGVSLPIIQHILGHQSIKTTQVYSAV 319


>gi|302064331|emb|CBK33708.2| transposase B [Staphylococcus aureus]
          Length = 630

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 106/259 (40%), Gaps = 31/259 (11%)

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS---GIKSFLKYLKKRKITTESNILNM 116
           +Q + QL+  EI A++S+     I   ++   +S   G+ S L  L+   + ++  I   
Sbjct: 259 VQRVHQLTRVEIEAYLSELNMMGIKPSTITGRISILEGLFSTLHRLEWDDVPSKLLIYPE 318

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              K   + PR ++E     +++ +  H     ++I    + +  ++  CG+RISE  +L
Sbjct: 319 DYPKIPRAKPRFIDE----FVLEQLNSHLDKLPEYI----ATMTMIVQECGMRISELCTL 370

Query: 177 TPQNIMDDQSTLRI----QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---- 228
               +++D+         Q K  K  IVP+   V   I    D       ++ + P    
Sbjct: 371 KKGCLLEDKDGDYFLKYYQWKMKKEHIVPISKEVALLIKVRED------KVSEEFPDSEY 424

Query: 229 LFRGIRGKPLNPGVFQ------RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
           LF    G PL    F+       Y + +    G      AH  RH+  T +++NG     
Sbjct: 425 LFPRKDGSPLKQETFRGELNKLAYEQNIVDKSGEIYRFHAHAFRHTVGTRMINNGVPQHI 484

Query: 283 IQSILGHFRLSTTQIYTNV 301
           +Q  LGH     T  Y ++
Sbjct: 485 VQKFLGHESPEMTSRYAHI 503


>gi|289423466|ref|ZP_06425268.1| phage integrase family protein [Peptostreptococcus anaerobius
           653-L]
 gi|289156100|gb|EFD04763.1| phage integrase family protein [Peptostreptococcus anaerobius
           653-L]
          Length = 311

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 75/178 (42%), Gaps = 17/178 (9%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + LN+ +   L+D + L  S    W        + L+   G+R SEAL LTP +    + 
Sbjct: 117 KYLNQYELHKLLDCLKLDESISWDWF-------IMLVAKTGMRFSEALGLTPNDFDFSRQ 169

Query: 187 TLRIQGKGDKIRIVPLLP-----SVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPL 238
            L I    +       LP     SVRK  L++  +  F     NL    P+F   +    
Sbjct: 170 VLSINKTWNYKEKGGFLPTKNRSSVRKIHLDWQTIIQFSQLLKNLPKDEPIFTINKDVVY 229

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           N  V     R+      +P+  + H LRH+ A+ LL  G    S+   LGH  ++TTQ
Sbjct: 230 NSTVNAILKRRCNE-ANIPV-VSIHGLRHTHASLLLFAGVSTASVARRLGHSSMATTQ 285


>gi|238896396|ref|YP_002921134.1| tyrosine recombinase [Klebsiella pneumoniae NTUH-K2044]
 gi|238548716|dbj|BAH65067.1| site-specific recombinase involved in flagellar phase
           switching/type 1 fimbriae regulatory protein with FimE
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 201

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 35/75 (46%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LF   +G PL+   F + I       GLPL    H LRHS    L + G D R IQ  LG
Sbjct: 107 LFLSRKGNPLSRQQFYQIIASSGGLAGLPLEIHPHMLRHSCGFALANMGIDTRLIQDYLG 166

Query: 289 HFRLSTTQIYTNVNS 303
           H  +  T  YT  N+
Sbjct: 167 HRNIRHTVWYTASNA 181


>gi|237744889|ref|ZP_04575370.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           7_1]
 gi|229432118|gb|EEO42330.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           7_1]
          Length = 290

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 59/272 (21%), Positives = 108/272 (39%), Gaps = 36/272 (13%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N++  LE E      T+ S + D  QFL +L      +  I T+ +L    I+ ++ + 
Sbjct: 12  KNFIYYLEFEENKKNNTVISIKKDLNQFLEYL-----NRKNITTLDKLDELVIKEYLVEL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +   + + +  R LS IK F KYL    +  +   + +  +K        LN  +     
Sbjct: 67  KAVDLSNSTYNRRLSSIKKFYKYLINNNLKEKGKEILIEGMKNDEKKIEYLNYNEIA--- 123

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             +L  T  E  +   R+  +  LLY  G+ ++E LSL   N   ++            R
Sbjct: 124 --LLRETMKEESFNILRDRLMFELLYSSGMTVAELLSLGELNFNLEK------------R 169

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF-------------QR 245
            + LL +    +L +   C  ++ L   +      + +  +  +F             +R
Sbjct: 170 EIYLLKNKTSKVLYFSQTCK-EVYLKFLIAKKEKFKERDSSNIIFVNNSNVRLTDRSVRR 228

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            I +      L    + +TLRHSF  ++L NG
Sbjct: 229 LISKYSEKANLQKEISPYTLRHSFCIYMLKNG 260


>gi|189460321|ref|ZP_03009106.1| hypothetical protein BACCOP_00958 [Bacteroides coprocola DSM 17136]
 gi|189433019|gb|EDV02004.1| hypothetical protein BACCOP_00958 [Bacteroides coprocola DSM 17136]
 gi|291515194|emb|CBK64404.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 407

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           R ++++    G+      H  RH++AT + LS+G  L ++  +LGH R+STTQIY  V 
Sbjct: 326 RTLKRIAAICGIERKLVFHCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYAKVT 384


>gi|152971805|ref|YP_001336914.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|330011065|ref|ZP_08306977.1| type 1 fimbriae regulatory protein FimE [Klebsiella sp. MS 92-3]
 gi|150956654|gb|ABR78684.1| recombinase involved in phase variation; regulator for fimA
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|158267621|gb|ABW24952.1| FimE [Klebsiella pneumoniae]
 gi|257479866|gb|ACV60169.1| FimE [Klebsiella pneumoniae]
 gi|328534296|gb|EGF60909.1| type 1 fimbriae regulatory protein FimE [Klebsiella sp. MS 92-3]
          Length = 188

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 70/169 (41%), Gaps = 8/169 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEY 213
           R+  ++ L +  G+RISE L L   ++   +  + ++  K     I PL    R+AI E 
Sbjct: 13  RDYCLILLAFRHGMRISELLDLHYHDLDLHEGRVNVRRLKNGFSTIHPLRFDEREAI-ER 71

Query: 214 YDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           + L         +   LF   RG  L+     R IR      G    T  H LRH+    
Sbjct: 72  WSLVRAGWKAADKTDALFISRRGTALSRQQAYRIIRSAGENAGTVTHTHPHMLRHACGYE 131

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-GGDW----MMEIYDQ 316
           L   G D R IQ  LGH  +  T  YT  N+    G W    ++E  DQ
Sbjct: 132 LAERGTDTRLIQDYLGHRNIRHTVRYTASNAARFAGIWERNNLLEEKDQ 180


>gi|217974213|ref|YP_002358964.1| integrase family protein [Shewanella baltica OS223]
 gi|217499348|gb|ACK47541.1| integrase family protein [Shewanella baltica OS223]
          Length = 164

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 8/81 (9%)

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           PLF   R        F + I+  R  L  P     H LRH+FA+H + NGG++  ++ IL
Sbjct: 82  PLFSSCRK------AFAQAIK--RTGLTFPEGQMTHILRHTFASHFMMNGGNILVLKQIL 133

Query: 288 GHFRLSTTQIYTNVNSKNGGD 308
           GH  +  T  Y +   ++  D
Sbjct: 134 GHADIKETMRYAHFAPEHLDD 154


>gi|119946567|ref|YP_944247.1| phage integrase family protein [Psychromonas ingrahamii 37]
 gi|119865171|gb|ABM04648.1| phage integrase family protein [Psychromonas ingrahamii 37]
          Length = 190

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 76/171 (44%), Gaps = 13/171 (7%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-------IQGKG 194
           LL  ++      AR+S +L   + CGLR+ E  +L   +I+D   T+R        + K 
Sbjct: 15  LLDVTNSCSRYSARDSTMLLFTHLCGLRVGEVAALRFDDILDANGTVRDEMTLDAARTKS 74

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRY 253
            + R + L   +++ +  Y +     LN   Q   LF   +    +     +++++L   
Sbjct: 75  KRARKIFLPKQMQRQLQAYVN----SLNKQPQHGYLFSTQKQAHFSANTATQHLQRLYAR 130

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            G+    T+H+ R ++ T L   G  +  +  + GH  + TTQ Y  VN +
Sbjct: 131 AGIS-GATSHSGRRTWLTALSQRGVSVFVLADMAGHRSIQTTQRYVTVNDE 180


>gi|209917522|ref|YP_002291606.1| putative phage integrase [Escherichia coli SE11]
 gi|227884672|ref|ZP_04002477.1| phage integrase family site-specific recombinase [Escherichia coli
           83972]
 gi|300817163|ref|ZP_07097381.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 107-1]
 gi|300977263|ref|ZP_07173794.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 45-1]
 gi|301045933|ref|ZP_07193118.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 185-1]
 gi|306813204|ref|ZP_07447397.1| putative phage integrase [Escherichia coli NC101]
 gi|331645493|ref|ZP_08346597.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli M605]
 gi|331656378|ref|ZP_08357340.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli TA206]
 gi|331675968|ref|ZP_08376680.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli H591]
 gi|82570975|gb|ABB83955.1| HbiF [Escherichia coli]
 gi|209910781|dbj|BAG75855.1| putative phage integrase [Escherichia coli SE11]
 gi|222032128|emb|CAP74867.1| Type 1 fimbriae regulatory protein FimX [Escherichia coli LF82]
 gi|227838273|gb|EEJ48739.1| phage integrase family site-specific recombinase [Escherichia coli
           83972]
 gi|281177498|dbj|BAI53828.1| putative phage integrase [Escherichia coli SE15]
 gi|294493486|gb|ADE92242.1| site-specific recombinase, phage integrase family [Escherichia coli
           IHE3034]
 gi|300302050|gb|EFJ58435.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 185-1]
 gi|300409904|gb|EFJ93442.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 45-1]
 gi|300530139|gb|EFK51201.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 107-1]
 gi|305853967|gb|EFM54406.1| putative phage integrase [Escherichia coli NC101]
 gi|307552233|gb|ADN45008.1| putative phage integrase [Escherichia coli ABU 83972]
 gi|312944907|gb|ADR25734.1| putative phage integrase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315287721|gb|EFU47124.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 110-3]
 gi|315295185|gb|EFU54520.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 153-1]
 gi|315300325|gb|EFU59561.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 16-3]
 gi|323953063|gb|EGB48931.1| phage integrase [Escherichia coli H252]
 gi|323958739|gb|EGB54440.1| phage integrase [Escherichia coli H263]
 gi|324020450|gb|EGB89669.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 117-3]
 gi|331045655|gb|EGI17781.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli M605]
 gi|331054626|gb|EGI26635.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli TA206]
 gi|331076026|gb|EGI47308.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli H591]
          Length = 187

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 61/150 (40%), Gaps = 1/150 (0%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILEY 213
           RN  ++ + +  G R SE L L   +I      L I+   +      PLLP     I  +
Sbjct: 26  RNRCLIMMAFIHGFRASELLDLRLSDIDASGKQLNIRRIKNGFSTTHPLLPDEYNLIKLW 85

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                   N      LF   + +P++   F   IR+  +  GL +    H LRH+    L
Sbjct: 86  LKQRKLIENGVEGDWLFLSRKRRPISRQHFFSIIREAGKRAGLAVKAHPHMLRHACGFAL 145

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             NG D R +Q  LGH  +  T  YT  N+
Sbjct: 146 ADNGVDTRLLQDYLGHRNIQHTVRYTASNA 175


>gi|317503724|ref|ZP_07961739.1| integrase [Prevotella salivae DSM 15606]
 gi|315665149|gb|EFV04801.1| integrase [Prevotella salivae DSM 15606]
          Length = 362

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 24/155 (15%)

Query: 162 LLYGC--GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVR-------- 207
            ++ C  GL I++   L   +I    D Q  +R + +  K+  IVPL P V+        
Sbjct: 185 FIFSCFTGLAIADMEHLKFGHIKSAADGQMYIRKERQKTKVEFIVPLHPIVKTIIEQQRQ 244

Query: 208 -KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            KA+ E  +    D  L  Q    R +    L+          + +  G+      H  R
Sbjct: 245 LKAVKEESNNTNMDNRLIFQPCCSRSVLAAKLSI---------VGKACGIKQRLCYHMGR 295

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H+F T  LS G  + SI  ++GH  +++TQIY  V
Sbjct: 296 HTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQV 330


>gi|315654864|ref|ZP_07907769.1| phage integrase [Mobiluncus curtisii ATCC 51333]
 gi|315490825|gb|EFU80445.1| phage integrase [Mobiluncus curtisii ATCC 51333]
          Length = 381

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 76/179 (42%), Gaps = 26/179 (14%)

Query: 148 ETKWIDARNSAILYLLYG-CGLRISEALSLTPQNIMDDQSTLRIQ--------------G 192
           +T   D     IL  L G  GLRI EAL+LTP  +  D+  +RI+               
Sbjct: 193 QTPARDGNQLEILVRLLGYTGLRIGEALALTPVALDLDRRIMRIERAVSEVSGRQVFGTP 252

Query: 193 KGDKIRIVPLLPSVRKA--ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           K  + R+VP+   +R+   +L        D        LF    G PL     + +    
Sbjct: 253 KNGRTRVVPIPDFLRRDLRVLTRATRGGDDF-------LFATKHGTPLRASNLRLHFDMA 305

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGD 308
              +G       H LRH+ AT  +S G +++S+Q +LGH   S T  +Y ++   + GD
Sbjct: 306 ALAVG-QAGLHIHDLRHTAATLAVSAGANVKSVQRMLGHSSASLTLDVYADLFEPDLGD 363


>gi|296163644|ref|ZP_06846371.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886111|gb|EFG66002.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 355

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 21/208 (10%)

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           +++ + LP    E+Q  TL+  V        +    RN  +L   Y   LR  E   L  
Sbjct: 147 VQRFHKLPWIPTEEQWTTLLAAV--------REEPMRNRCMLAFAYDAALRREELCRLRS 198

Query: 179 QNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR- 234
            ++      LR++    KG + R+VP   +  + + +Y    P   + +  L L    R 
Sbjct: 199 SDLDPAHRLLRVRAETTKGRRERVVPYSETAAELLRDYLRHRPPGRDRHA-LFLSESPRN 257

Query: 235 -GKPLNPGVFQRYIRQLRRYLGLPLSTTA---HTLRHSFATHLLSNGGDLRSIQSILGHF 290
            G P+    + + +R +     L    TA   HTLRH   T L  +G  L  I    GH 
Sbjct: 258 HGAPITLWTWSKVVRSI----ALRADVTAFSTHTLRHLCLTDLARSGWQLHEIARFAGHQ 313

Query: 291 RLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
            L TT+ Y +++ ++  D   +   Q H
Sbjct: 314 SLETTRQYIHLSGQDLADRFAKTMRQIH 341


>gi|288925733|ref|ZP_06419664.1| integrase [Prevotella buccae D17]
 gi|288337388|gb|EFC75743.1| integrase [Prevotella buccae D17]
          Length = 407

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 31/55 (56%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           + +R   +  G+    T H  RHSFAT+LLS G +++ +  +LGH  L  TQ Y 
Sbjct: 331 KVLRHWIKRAGIDKHITWHCGRHSFATNLLSTGANIKVVSELLGHSSLKFTQKYV 385


>gi|169826079|ref|YP_001696237.1| prophage Lp3 protein 1, integrase [Lysinibacillus sphaericus C3-41]
 gi|168990567|gb|ACA38107.1| prophage Lp3 protein 1, integrase [Lysinibacillus sphaericus C3-41]
          Length = 390

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 25/170 (14%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-----QGKGDKIRI------------- 199
           A+  LL   G+R  EAL+LT  ++    + +RI     +GK +K+ +             
Sbjct: 208 ALFRLLAFSGMRKGEALALTWNDLNFTTNEMRINKALSRGKNNKLYVKSTKTGFARTIKM 267

Query: 200 ----VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
               + +L   +K   + Y +  F+     QL +F   R + L P   +++I  +++   
Sbjct: 268 DDKTMAILKEWKKKQKQEYLVLGFNTMQPKQL-VFSNERNEFLQPTKTRKWILHVQKKYK 326

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
           L   TT H LRH+  + L   G  L+ +Q  LGH  + TT  IY +V  K
Sbjct: 327 LGTITT-HGLRHTHCSLLFEAGASLKEVQDRLGHSDVQTTMNIYAHVTKK 375


>gi|298206679|ref|YP_003714858.1| tyrosine type site-specific recombinase [Croceibacter atlanticus
           HTCC2559]
 gi|83849310|gb|EAP87178.1| tyrosine type site-specific recombinase [Croceibacter atlanticus
           HTCC2559]
          Length = 405

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 87/199 (43%), Gaps = 26/199 (13%)

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           +KK+ +  R LN +Q    + N+ +   H+ + I       ++ ++  GLR  + + L  
Sbjct: 203 VKKNKTTKRYLNAEQFDAFM-NLEVPDKHKAQVI---KDMFIFSVFSGGLRFGDVIELQW 258

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVR---KAI--LEYYD---------LCPFDLNLN 224
           +N   D+   RI      IR      S+R   KAI  LE Y          + PF   ++
Sbjct: 259 KNY--DKKNHRITKT---IRKTKRQHSIRIGQKAIDILEKYASYDNSQNDIIFPF-AKID 312

Query: 225 IQLPLFRGIRGKPLNPGVF--QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
            Q    R  R    N  +     Y+ ++ + L LP + + H  RH+FAT  L+NG  +  
Sbjct: 313 EQYFKDREHRSLITNRAISLSNMYLSRMGKQLELPFNLSFHISRHTFATRALNNGMRIEH 372

Query: 283 IQSILGHFRLSTTQIYTNV 301
           +  ++ H  +  TQ+Y  +
Sbjct: 373 VSKLMDHTDIGITQVYAKI 391


>gi|325855562|ref|ZP_08171873.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483776|gb|EGC86736.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 439

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 6/146 (4%)

Query: 162 LLYGC--GLRISEALSLT---PQNIMDDQSTLRIQGKGDKIR-IVPLLPSVRKAILEYYD 215
            ++ C  GL I++   LT    ++  D Q  +R + +  K+  IVPL P  +  I +   
Sbjct: 243 FIFSCFTGLAITDMEHLTFGYIKSAADGQMYIRKERQKTKMEFIVPLHPIAKTIIEQQRQ 302

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
           L       N      R I     +  V    +  + +  G+    + H  RH+F T  LS
Sbjct: 303 LQAVKEESNNTNMDNRLIFQPCCSRSVLAAKLSIVGKACGIKQRLSYHMARHTFGTMCLS 362

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNV 301
            G  + SI  ++GH  +++TQIY  V
Sbjct: 363 AGIPIESIAKMMGHASIASTQIYAQV 388


>gi|317477537|ref|ZP_07936761.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906291|gb|EFV28021.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 192

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             R ++++    G+      H  RH++AT + LS+G  L ++  +LGH R+STTQIY  V
Sbjct: 109 LNRTLKRIAAICGIERKLVFHCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYAKV 168

Query: 302 NS 303
             
Sbjct: 169 TD 170


>gi|301062571|ref|ZP_07203209.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300443336|gb|EFK07463.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 283

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 17/143 (11%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI-----------VPLLPSVR 207
           +  L    G R  E L    ++I    S + IQ   +K R            + + P+V 
Sbjct: 99  LFMLAIFTGARQGEILGAKWEDIDWKNSQIHIQRTFNKSRFFTPKTKTSTRRIDIGPTVL 158

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           K +  +   CP     N    LF    G P+N   + QR+ R   +   LPL    H LR
Sbjct: 159 KELRAWKLACP----KNEHDLLFPNGAGGPINYSNLVQRHFRPALKATSLPL-IRFHDLR 213

Query: 267 HSFATHLLSNGGDLRSIQSILGH 289
           H+FA+ L+  G +++ IQ+ LGH
Sbjct: 214 HTFASLLIEQGENVKYIQTQLGH 236


>gi|189465784|ref|ZP_03014569.1| hypothetical protein BACINT_02145 [Bacteroides intestinalis DSM
           17393]
 gi|189434048|gb|EDV03033.1| hypothetical protein BACINT_02145 [Bacteroides intestinalis DSM
           17393]
          Length = 407

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           R ++++    G+      H  RH++AT + LS+G  L ++  +LGH R+STTQIY  V 
Sbjct: 326 RTLKRIAAICGIERKLVFHCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYAKVT 384


>gi|218129591|ref|ZP_03458395.1| hypothetical protein BACEGG_01168 [Bacteroides eggerthii DSM 20697]
 gi|217988321|gb|EEC54644.1| hypothetical protein BACEGG_01168 [Bacteroides eggerthii DSM 20697]
          Length = 407

 Score = 44.3 bits (103), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           R ++++    G+      H  RH++AT + LS+G  L ++  +LGH R+STTQIY  V 
Sbjct: 326 RTLKRIAAICGIERKLVFHCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYAKVT 384


>gi|161507540|ref|YP_001577494.1| Phage integrase [Lactobacillus helveticus DPC 4571]
 gi|160348529|gb|ABX27203.1| Phage integrase [Lactobacillus helveticus DPC 4571]
          Length = 309

 Score = 44.3 bits (103), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 11/147 (7%)

Query: 159 ILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILE 212
             +L+   GLR +EAL+LTP++   + QS +  +    K ++    P     S R  +++
Sbjct: 140 FFFLIAKTGLRFAEALALTPEDFDFEKQSIIINKSWNYKEKVGHFQPTKNESSNRTVMVD 199

Query: 213 YYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +  +  F   +  +    P+F G   +  N  + Q+ +    + L +P+  + H LRH+ 
Sbjct: 200 WQLMQQFQSMIQQKESDQPIFFGKDQRVYNSTLNQK-LESYCKKLDIPI-ISIHGLRHTH 257

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           A+ LL  G  + S+   LGH   +TTQ
Sbjct: 258 ASLLLYEGVSVASVAKRLGHNNTTTTQ 284


>gi|310826778|ref|YP_003959135.1| integrase [Eubacterium limosum KIST612]
 gi|308738512|gb|ADO36172.1| integrase [Eubacterium limosum KIST612]
          Length = 336

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS- 293
           G   N    +R+ ++  + L +  + T H+LRHSFAT  + +G  ++ I ++LGH + + 
Sbjct: 239 GNSYNGRTVERHFKKRLKELMISETYTFHSLRHSFATRAMESGVVIKVISALLGHSQTAT 298

Query: 294 TTQIYTNVNSKNGGDWMMEIYD 315
           TT IY +++       MM++ D
Sbjct: 299 TTDIYLHLSESFIRQEMMKMKD 320


>gi|300715658|ref|YP_003740461.1| phage integrase [Erwinia billingiae Eb661]
 gi|299061494|emb|CAX58608.1| Phage integrase [Erwinia billingiae Eb661]
          Length = 346

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 27/45 (60%)

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           LP     H LRH+FA+H + N G++  ++ ILGH  +  T IY +
Sbjct: 279 LPHGQKTHVLRHTFASHFMMNSGNILVLRQILGHTDIKMTMIYAH 323


>gi|298388051|ref|ZP_06997597.1| integrase [Bacteroides sp. 1_1_14]
 gi|329960270|ref|ZP_08298712.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|298259151|gb|EFI02029.1| integrase [Bacteroides sp. 1_1_14]
 gi|328532943|gb|EGF59720.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 407

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           R ++++    G+      H  RH++AT + LS+G  L ++  +LGH R+STTQIY  V 
Sbjct: 326 RTLKRIAAICGIERKLVFHCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYAKVT 384


>gi|254701428|ref|ZP_05163256.1| Phage integrase [Brucella suis bv. 5 str. 513]
 gi|261751967|ref|ZP_05995676.1| phage integrase [Brucella suis bv. 5 str. 513]
 gi|261741720|gb|EEY29646.1| phage integrase [Brucella suis bv. 5 str. 513]
          Length = 308

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 21/148 (14%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA--ILEYYDLCPF 219
            L   G  + EA+ LT  +I + + T  +  K ++ R VPL    RKA  I       PF
Sbjct: 167 FLVDTGCHLGEAIGLTWNDIQEQRVTFWVT-KSNRSRTVPLTRRARKASHIPRERLKGPF 225

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHLLSNG 277
            +                LN   F++   + +  +GL        H LRH+ A+ L+  G
Sbjct: 226 SM----------------LNQVRFRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVRGG 269

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            D+R +Q  LGH  L  T  Y ++ + +
Sbjct: 270 IDIRRVQMWLGHQTLQMTMRYAHLATHD 297


>gi|121594246|ref|YP_986142.1| phage integrase family protein [Acidovorax sp. JS42]
 gi|120606326|gb|ABM42066.1| phage integrase family protein [Acidovorax sp. JS42]
          Length = 417

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 72/175 (41%), Gaps = 35/175 (20%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTLRIQGKGDKIRIVPL 202
           AR   +  LLY  GLRISE  +    N M D           +  L I+GKGDK R +P 
Sbjct: 226 ARYRWLFSLLYIGGLRISEVCN----NSMGDFYWRRGADGHERWWLEIRGKGDKTRAIPA 281

Query: 203 LPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPL 258
              +   ++ Y +   L       +    L   I G +P+        I+ + R     L
Sbjct: 282 TDELVSELMRYRNARNLALLPREGDTLPLLLPLIGGCRPMGRSGVHELIKDIFRKTAARL 341

Query: 259 ---------------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                            +AH +RH+  TH  S+  DL++++  LGH  ++TT IY
Sbjct: 342 RNLGTDHEAAAAHVEQASAHWMRHTAGTHQ-SDNMDLKAVRDNLGHANIATTSIY 395


>gi|148244011|ref|YP_001220249.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|146400574|gb|ABQ29107.1| phage integrase family protein [Acidiphilium cryptum JF-5]
          Length = 403

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 97/242 (40%), Gaps = 46/242 (19%)

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNV 141
           G R  K   + ++ FL+YL     T  +  L++    +     LPR L+      ++ +V
Sbjct: 167 GARRDKTIATHVRIFLQYLFGCGATATNLALSVPKTARRWGARLPRHLSPNGVEAVLASV 226

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
             +  H      AR+ A+L L+   GLR +E +++   +I      L ++GKG     +P
Sbjct: 227 RDNQRH-----GARDYAMLLLMARLGLRAAEVIAIQLDDIDWRAGELLVRGKGKLHDRLP 281

Query: 202 LLPSVRKAILEYY------DLC------------PFDLNLNIQLPLFRGIRG---KPLNP 240
           +   V  A+  Y         C            PF     +   L   ++    KP+ P
Sbjct: 282 ITVEVGDALSRYLREERGPATCRTMFVTHRAPHRPFKDGQIVNAILKDALKATGQKPVTP 341

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                       Y+G      +H LRHS AT L++ G  L  +  +L H   S+T IY  
Sbjct: 342 ------------YVG------SHLLRHSLATRLVNTGASLDEVGDVLRHRSRSSTMIYAR 383

Query: 301 VN 302
           ++
Sbjct: 384 LD 385


>gi|323702859|ref|ZP_08114517.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
 gi|323532117|gb|EGB21998.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
          Length = 320

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 22/164 (13%)

Query: 158 AILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           AIL +LYG G+RI EA+SL  +++ + ++  +  Q K    R++P   S+     +Y + 
Sbjct: 139 AILRMLYGTGIRIGEAVSLKVKDVNLTEKYIIIRQSKNGMERMIPFSDSLADVCRQYRN- 197

Query: 217 CPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-----AHTLRHS 268
               L + +Q P    F    G+  NP     + R++    G+           H LRH+
Sbjct: 198 ---SLQV-LQDPEDYFFVKRNGRRCNPKGIYEWFRKVLWEAGISHGGKRQGPRLHDLRHA 253

Query: 269 FATHLLS----NGGDLRS----IQSILGHFRLSTTQIYTNVNSK 304
           F+ H L+    +G DL      +   LGH  L  T+ Y  + S+
Sbjct: 254 FSVHSLTAMAESGLDLYYSLPILSEYLGHQSLEATEKYVRLTSE 297


>gi|288551749|gb|ADC53346.1| transposase B [Staphylococcus aureus]
 gi|288551789|gb|ADC53385.1| transposase B [Staphylococcus aureus]
 gi|329315329|gb|AEB89742.1| Transposase B [Staphylococcus aureus subsp. aureus T0131]
          Length = 630

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 106/259 (40%), Gaps = 31/259 (11%)

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS---GIKSFLKYLKKRKITTESNILNM 116
           +Q + QL+  EI A++S+     I   ++   +S   G+ S L  L+   + ++  I   
Sbjct: 259 VQRVHQLTRVEIEAYLSELNMMGIKPSTITGRISILEGLFSTLHRLEWDDVPSKLLIYPE 318

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              K   + PR ++E     +++ +  H     ++I    + +  ++  CG+RISE  +L
Sbjct: 319 DYPKIPRAKPRFIDE----FVLEQLNSHLDKLPEYI----ATMTMIVQECGMRISELCTL 370

Query: 177 TPQNIMDDQSTLRI----QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---- 228
               +++D+         Q K  K  IVP+   V   I    D       ++ + P    
Sbjct: 371 KKGCLLEDKDGDYFLKYYQWKMKKEHIVPISKEVVLLIKVRED------KVSEEFPDSEY 424

Query: 229 LFRGIRGKPLNPGVFQ------RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
           LF    G PL    F+       Y + +    G      AH  RH+  T +++NG     
Sbjct: 425 LFPRKDGSPLKQETFRGELNKLAYEQNIVDKSGEIYRFHAHAFRHTVGTRMINNGMPQHI 484

Query: 283 IQSILGHFRLSTTQIYTNV 301
           +Q  LGH     T  Y ++
Sbjct: 485 VQKFLGHESPEMTSRYAHI 503


>gi|265764112|ref|ZP_06092680.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
 gi|263256720|gb|EEZ28066.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
 gi|301162792|emb|CBW22339.1| putative phage integrase [Bacteroides fragilis 638R]
          Length = 403

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 16/158 (10%)

Query: 167 GLRISEALSLTPQNI---MDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           GL  ++  +L P++I    + +  +RI+  K D    +PL P +   ILE Y+    D  
Sbjct: 251 GLAYADTRALHPRHIGTTSEGRRYIRIRRAKTDVEAFIPLHP-IAGQILELYNTTDDDRP 309

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
           +   LP+   +  +    GV           LG+  + + H  RHSF T  L+ G  + S
Sbjct: 310 V-FPLPVRDVLWYEAHGMGV----------ALGMKENLSYHMARHSFGTLTLTAGIPIES 358

Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           I  ++GH  + +TQ+Y  V  +     M  + ++  P+
Sbjct: 359 IARMMGHTNIDSTQVYAQVTDRKISSDMNRLMERRKPA 396


>gi|258538870|ref|YP_003173369.1| phage-related integrase [Lactobacillus rhamnosus Lc 705]
 gi|257150546|emb|CAR89518.1| Phage-related integrase [Lactobacillus rhamnosus Lc 705]
          Length = 383

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 31/180 (17%)

Query: 151 WIDARN----SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-----QGKGDKIRIVP 201
           +IDA+     +A+  +L   GLR  E L+LT ++I    ST+ +     QG   +  + P
Sbjct: 188 YIDAKQEPQKTALFRILAFGGLRRGECLALTWKDISFTDSTITVNKTLSQGMNGRQLVQP 247

Query: 202 LLPSVRKA------------ILEYYDLCPFD----LNLNIQLP---LFRGIRGKPLNPGV 242
             P  RK+             L+++ L        L  N   P   +F   + K L    
Sbjct: 248 --PKTRKSRRTITMDSKTMSALKHWRLVQLQKYMALGFNANKPDQLVFSNSKNKHLLLHK 305

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
              +++ +     +    T H  RHS A+ L S G  ++ +Q  LGH  + TT  IYT+V
Sbjct: 306 PADWLKSIEDTHKIEHRITIHGFRHSHASALFSAGATVKEVQERLGHSDVKTTLNIYTHV 365


>gi|254994439|ref|ZP_05276629.1| bacteriophage integrase [Listeria monocytogenes FSL J2-064]
          Length = 286

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 13/147 (8%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-KIRIVPLLP-----SVRKAILE 212
            + L+   GLR SEAL+LTP +       + I    D K+      P     S RK  ++
Sbjct: 141 FILLIIKTGLRFSEALALTPSDFDFSTQKISINKTWDYKMVTGSFQPTKNESSNRKIQID 200

Query: 213 YYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +     F   + ++    P+F  ++ +  N  +  R ++ L +   +P + T H+LRH+ 
Sbjct: 201 WQLAMQFSQLIKMKDSDKPIF--VKSRVFNSTINNR-LKVLCQNANIP-TITIHSLRHTH 256

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           A+ LL  G  + S+ + LGH  ++TTQ
Sbjct: 257 ASLLLFAGVSIASVANRLGHSSMTTTQ 283


>gi|225174939|ref|ZP_03728936.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169579|gb|EEG78376.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
          Length = 191

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 11/151 (7%)

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKA 209
           W+  R+  I  + Y C LR SE   LT       +S L     K  +   + L    +KA
Sbjct: 27  WL--RDYCIFRVAYRCALRASEVGLLTVAEYNAQRSELYCNRLKNSQNNTIRLDDETKKA 84

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT--AHTLRH 267
           + +Y        +  I   LF     KP++       +R+  +   +        H+L+H
Sbjct: 85  LEKYIR------DYGIDDCLFPSQVSKPISRQTLDLLMRKYCKVAKISDKKKWHFHSLKH 138

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           S A HL  +G D++ +Q  LGH  +++T +Y
Sbjct: 139 SVAVHLADSGLDVKELQHYLGHKNVNSTLVY 169


>gi|225010748|ref|ZP_03701217.1| integrase family protein [Flavobacteria bacterium MS024-3C]
 gi|225005119|gb|EEG43072.1| integrase family protein [Flavobacteria bacterium MS024-3C]
          Length = 351

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 16/142 (11%)

Query: 162 LLYGCGLRIS-EALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLC 217
           + YGC LR   E   LT  +   D S +++ G   K  + RIVP+ PS  K +L      
Sbjct: 204 MTYGCLLRPHREVRELTWGDFTADLSYIKLSGSRNKSGRNRIVPV-PSYIKELLN----- 257

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSN 276
             D NLNI    F G    P NP  F+    + ++   L     T ++ RHS A  +   
Sbjct: 258 KGDNNLNI----FTGTTKAP-NPDYFKTIWGRFKKVSKLLEQDQTLYSFRHSGAIEIYKR 312

Query: 277 GGDLRSIQSILGHFRLSTTQIY 298
            G L  +Q  +GH  L+ +  Y
Sbjct: 313 TGSLSKLQKAMGHSSLAVSLTY 334


>gi|167588311|ref|ZP_02380699.1| Phage integrase [Burkholderia ubonensis Bu]
          Length = 397

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 69/176 (39%), Gaps = 30/176 (17%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSVR 207
           R   +  LLY  GLRI+EA   T             D+  L + GKG K R+VP    + 
Sbjct: 208 RARWLFTLLYLGGLRITEAADNTMGGFFCRRDAEGRDRWWLDVTGKGGKQRLVPATDEMM 267

Query: 208 KAILEYY------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL--- 258
             +  Y        L     +  + LP+  G   KPL        ++ + R+    L   
Sbjct: 268 AELARYRRAHQLPALPGPGEDTPLVLPV--GHARKPLTRAALHTIVKSVFRHAADRLRAQ 325

Query: 259 ------------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                         +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +
Sbjct: 326 GDAGEQQARVLEQASAHWLRHSAGSHMADGRLDLRIVRDNLGHVSLTTTSQYLHAD 381


>gi|161522815|ref|YP_001585744.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|160346368|gb|ABX19452.1| integrase family protein [Burkholderia multivorans ATCC 17616]
          Length = 399

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 30/177 (16%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIM--------DDQSTLRIQGKGDKIRIVPLLPS 205
           AR   +  +LY  GLR +E  S TP   +         ++  + + GKG+K R+VP    
Sbjct: 208 ARCRWLFTVLYLAGLRATEIAS-TPMGAVCCRRDATGAERWWIEVLGKGNKPRLVPATDE 266

Query: 206 VRKAILEY---YDLCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYLGLP--- 257
           +   +  Y   + L P       + PL   + G  KPL+ G   + ++++          
Sbjct: 267 LIAELARYRRAHGLAPSPYQ-GERRPLLLPLIGHEKPLSRGSIHQIVKEVFALAAARLRA 325

Query: 258 ------------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                        S +AH +RH+  +H+     DLR ++  LGH  L+TT +Y +  
Sbjct: 326 RGPEWQAQADQLASASAHWVRHTAGSHMTDRQVDLRFVRDNLGHASLATTSVYLHAE 382


>gi|56130683|ref|YP_145586.1| putative integrase/recombinase [Ralstonia metallidurans CH34]
 gi|94152390|ref|YP_581797.1| tyrosine-based site-specific recombinase BimA [Cupriavidus
           metallidurans CH34]
 gi|56068674|emb|CAI11238.1| putative integrase/recombinase [Cupriavidus metallidurans CH34]
 gi|93358760|gb|ABF12847.1| Tyrosine-based site-specific recombinase BimA [Cupriavidus
           metallidurans CH34]
          Length = 495

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 64/302 (21%), Positives = 125/302 (41%), Gaps = 31/302 (10%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL-SYTEIRAFI---SKRRTQKIGD 85
           G S  TL++Y  + R+ + +   +    ++  T +QL +Y          ++  + ++ +
Sbjct: 179 GRSPHTLRAYGAELRRLMRWCGVHEVGPLSDLTRQQLLAYRHTLQHGEPGTENASPQLSE 238

Query: 86  RSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
            +  R+L+ + S   Y           +  L+  +  ++   P  L     L   D  L 
Sbjct: 239 ATCTRALAVVASLYGYWYDTGYLQANPAAGLSAGSRARAGFAPTRLIPPALLDACDAWLD 298

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEAL----SLTP--QNIMDDQSTLRIQGKGDKI 197
            ++ +      R  AI  L    G R++E +    +  P  +  +    TL + GKG K+
Sbjct: 299 ASAVDASLPALRRRAIWALYRYAGARLAELVWSDEAALPRLEAEVPGHWTLYVCGKGRKV 358

Query: 198 RIVPL-LPSVRKAILEYYDLC---PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           R +PL +P V  A+L  Y      P +   +  LP+  G +G+ L      R ++ +   
Sbjct: 359 RAIPLPVPCV--AVLRAYRHARGLPPEPPAHEALPVIHGHKGEALQSAGLYREVKAIFAA 416

Query: 254 LGLPL------------STTAHTLRHSFA-THLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +   L            + + H LRH++A T ++ +   L + Q++LGH  + TT  Y  
Sbjct: 417 VADGLQARDPAQALLLRAASPHWLRHAYARTLVVDHQVPLPAAQALLGHASVQTTAAYAR 476

Query: 301 VN 302
            +
Sbjct: 477 TD 478


>gi|296272532|ref|YP_003655163.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
 gi|296096706|gb|ADG92656.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
          Length = 356

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 100/215 (46%), Gaps = 29/215 (13%)

Query: 90  RSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLP----RALNEKQALTLVDNVLLH 144
           +SLS  ++ L  +    I  E  + N +  +KK +++P    +  ++ +   L+DNV   
Sbjct: 128 KSLSMARAVLNVIFNDAIADEIILRNPLSVIKKPHNVPTREIKPFSQDEIFKLLDNV--- 184

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
                   + +      + +  G+R  E L+L   +I  +   +++  +  K + +   P
Sbjct: 185 --------NEKVRCYFAIGFFTGMRTGEILALKWSDIDYENGIIKV--RRSKRQGIESEP 234

Query: 205 SVRKAI--LEYYD-LCPFDLN-LNIQLP----LFRGIRGKPLNP--GVFQRYIRQLRRYL 254
             + +I  ++  D L P+  N L  ++P    LF     KP N   G+F RY + L   L
Sbjct: 235 KTKASIRDVDILDILIPYLKNHLKFKIPQSDYLFTSNFQKPYNDCMGIFARYWKPLFEKL 294

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
            +      + +RH+FA+ ++SNG D+  + ++LGH
Sbjct: 295 DIQYRN-PYQMRHTFASMMISNGEDILWVSNMLGH 328


>gi|296163758|ref|ZP_06846463.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295885997|gb|EFG65910.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 313

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 96/227 (42%), Gaps = 19/227 (8%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           LS ++ FL+++K     T     ++    + N  P  LNE+Q  +++             
Sbjct: 69  LSALRGFLRFVKAIDPATSVPDNHLLPSPRRNP-PYILNEEQLQSILHAAATAQPKGGLR 127

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRK 208
            DA   A+L LL   GLR+SEAL L  +++    +    +  + K  K RIV L P+   
Sbjct: 128 ADA-YVAVLGLLASSGLRVSEALHLKERDVHLRNEPPHVVLRETKFKKSRIVALHPTTAV 186

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS----TTAHT 264
            + +Y D      +       F    G+ L+     R+       LGL L      T H+
Sbjct: 187 HLQQYADRREHKCHARRAPLFFVTDFGQALDYDTLSRWFSCATAKLGLHLPDGRRPTLHS 246

Query: 265 LRHSFATHLL-------SNGGDLRSIQSI-LGHFRLSTTQIYTNVNS 303
           LRHSFA   L       ++  +L    S+ LGH  +S  + Y  V+S
Sbjct: 247 LRHSFAVRRLTQWYEDGASAAELAPTLSVYLGH--VSPRESYWYVSS 291


>gi|237720977|ref|ZP_04551458.1| phage integrase [Bacteroides sp. 2_2_4]
 gi|229449812|gb|EEO55603.1| phage integrase [Bacteroides sp. 2_2_4]
          Length = 379

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGDWMM 311
           Y  L  + T H  RH+FAT  L+NG  + ++  +LGH  + TTQ Y  V N++   D+ M
Sbjct: 314 YAELDRNLTVHMSRHTFATMCLNNGVKMENVSKMLGHTNVRTTQQYAKVLNAEVEKDFEM 373


>gi|206480014|ref|YP_002235525.1| putative integrase [Burkholderia cenocepacia J2315]
 gi|195945170|emb|CAR57801.1| putative integrase [Burkholderia cenocepacia J2315]
          Length = 604

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           T+AH LRH+F T   + G  +  +Q ILGH  L+TT IY     +
Sbjct: 556 TSAHALRHTFGTDATARGVPIDVVQQILGHASLATTSIYVKAQQQ 600


>gi|191173558|ref|ZP_03035084.1| site-specific recombinase, phage integrase family [Escherichia coli
           F11]
 gi|190906153|gb|EDV65766.1| site-specific recombinase, phage integrase family [Escherichia coli
           F11]
          Length = 200

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 61/150 (40%), Gaps = 1/150 (0%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILEY 213
           RN  ++ + +  G R SE L L   +I      L I+   +      PLLP     I  +
Sbjct: 39  RNRCLIMMAFIHGFRASELLDLRLSDIDASGKQLNIRRIKNGFSTTHPLLPDEYNLIKLW 98

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                   N      LF   + +P++   F   IR+  +  GL +    H LRH+    L
Sbjct: 99  LKQRKLIENGVEGDWLFLSRKRRPISRQHFFSIIREAGKRAGLAVKAHPHMLRHACGFAL 158

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             NG D R +Q  LGH  +  T  YT  N+
Sbjct: 159 ADNGVDTRLLQDYLGHRNIQHTVRYTASNA 188


>gi|331082875|ref|ZP_08331996.1| hypothetical protein HMPREF0992_00920 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400016|gb|EGG79669.1| hypothetical protein HMPREF0992_00920 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 380

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 9/80 (11%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTAHTLRHSFATHLLSNGGDLRS 282
           +F   + +P   GV  R IR + + +       LP   TAHT RH+FAT  +  G + ++
Sbjct: 286 VFVTRKNRPTKLGVINRCIRSVIQNINKAGIDFLPF--TAHTFRHTFATRAIECGMNPKT 343

Query: 283 IQSILGHFRLS-TTQIYTNV 301
           +Q ILGH  L  T  +Y +V
Sbjct: 344 LQKILGHGTLQMTMDLYCHV 363


>gi|26246328|ref|NP_752367.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli CFT073]
 gi|91209384|ref|YP_539370.1| type 1 fimbriae regulatory protein FimX [Escherichia coli UTI89]
 gi|117622590|ref|YP_851503.1| hypothetical protein APECO1_1681 [Escherichia coli APEC O1]
 gi|218557234|ref|YP_002390147.1| DNA recombinase [Escherichia coli S88]
 gi|237707693|ref|ZP_04538174.1| type 1 fimbriae regulatory protein fimB [Escherichia sp. 3_2_53FAA]
 gi|26106726|gb|AAN78911.1|AE016756_94 Type 1 fimbriae Regulatory protein fimB [Escherichia coli CFT073]
 gi|91070958|gb|ABE05839.1| type 1 fimbriae regulatory protein FimX [Escherichia coli UTI89]
 gi|115511714|gb|ABI99788.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|218364003|emb|CAR01668.1| Putative DNA recombinase similar to Type 1 fimbriae Regulatory
           proteins [Escherichia coli S88]
 gi|226898903|gb|EEH85162.1| type 1 fimbriae regulatory protein fimB [Escherichia sp. 3_2_53FAA]
          Length = 200

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 61/150 (40%), Gaps = 1/150 (0%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILEY 213
           RN  ++ + +  G R SE L L   +I      L I+   +      PLLP     I  +
Sbjct: 39  RNRCLIMMAFIHGFRASELLDLRLSDIDASGKQLNIRRIKNGFSTTHPLLPDEYNLIKLW 98

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                   N      LF   + +P++   F   IR+  +  GL +    H LRH+    L
Sbjct: 99  LKQRKLIENGVEGDWLFLSRKRRPISRQHFFSIIREAGKRAGLAVKAHPHMLRHACGFAL 158

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             NG D R +Q  LGH  +  T  YT  N+
Sbjct: 159 ADNGVDTRLLQDYLGHRNIQHTVRYTASNA 188


>gi|313900411|ref|ZP_07833904.1| phage integrase, N-terminal SAM domain protein [Clostridium sp.
           HGF2]
 gi|312954473|gb|EFR36148.1| phage integrase, N-terminal SAM domain protein [Clostridium sp.
           HGF2]
          Length = 282

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 12/151 (7%)

Query: 153 DARNSAILYLL---YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           D  N  +  LL      G+R+SE   +T + +   ++T  +Q KG K+R +     +RK 
Sbjct: 120 DTHNERMFLLLQTICATGIRVSEHRFITVEAVKSRKAT--VQNKG-KLRYIFFPSRLRKQ 176

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHS 268
           +L Y               +F    G+PL+     + +++L  +  +  +    H LRH 
Sbjct: 177 LLAYCKRKKITSG-----SVFVTNSGRPLDRSNIWKAMKKLCLHANVSSNKVFPHNLRHL 231

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           FA    S   D+  +  ILGH  + TT++YT
Sbjct: 232 FAFTFYSMEKDVVRLADILGHSSIETTRVYT 262


>gi|295102937|emb|CBL00482.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 391

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 70/165 (42%), Gaps = 31/165 (18%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQG-------KGDKI-------------RIVPLLPSV 206
           GLR SE L L    I  +++TL I+         G K+             R +PL+P +
Sbjct: 207 GLRRSEVLGLKWDAIDFEENTLEIKHIVTQASIDGKKVLVQADRAKTKSSLRTLPLVPPI 266

Query: 207 RKAIL-------EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PL 258
           R  +L        Y  LC    N +    L     G  + P        +L    GL P+
Sbjct: 267 RDRLLMLKGQQETYRRLCGKSYNRDYLGYLCVDEIGNIIRPNYVSEQFPKLLEKNGLRPI 326

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN 302
               H LRHS A+ LL+NG  ++ IQ  LGH   STT  IY +++
Sbjct: 327 RF--HDLRHSCASLLLANGVPMKQIQEWLGHSDFSTTANIYAHLD 369


>gi|262067772|ref|ZP_06027384.1| integrase/recombinase, phage integrase family [Fusobacterium
           periodonticum ATCC 33693]
 gi|291378498|gb|EFE86016.1| integrase/recombinase, phage integrase family [Fusobacterium
           periodonticum ATCC 33693]
          Length = 329

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 64/154 (41%), Gaps = 13/154 (8%)

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
           + + R+ AI  LL   G+R+     L   +I     TL +  KG K R V         +
Sbjct: 167 FTNKRDRAIFELLLHSGIRVGGLCGLKFDDINFSDKTLTVFEKGRKYRTVYFNEEAEFYL 226

Query: 211 LEYY------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            EY       D     + +++  P       K L     +  IRQ  +  G+  +   H 
Sbjct: 227 KEYLEERQHLDTKEKHIFVSLLKPY------KKLQISGVEIMIRQAGKEAGVN-NVHPHR 279

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            R +FAT     G  +  I+++LGH +L TTQIY
Sbjct: 280 FRRTFATTAWKKGMSIIDIKNLLGHKKLDTTQIY 313


>gi|256845938|ref|ZP_05551396.1| phage integrase [Fusobacterium sp. 3_1_36A2]
 gi|256719497|gb|EEU33052.1| phage integrase [Fusobacterium sp. 3_1_36A2]
          Length = 351

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 20/162 (12%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-----KGDKIRIVPLLPSVR 207
           D  N     +L+  G+R  E L+LT +++  +  T+ I       K +++   P  P  R
Sbjct: 183 DKENKFFYIILFWTGMRKGELLALTYEDVDFENKTITINKNFQIVKKERLITDPKTPRGR 242

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-------GLPLST 260
           + I         D+ LN    L+           +F      L+R L       G+P   
Sbjct: 243 RVI------AVNDVVLNCIKDLWNTSYKPNKTDKIFYLSKDSLKRQLDTACKKAGVP-RI 295

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
             H LRHS A++LLSNG ++  +   LGH ++ TT  IY ++
Sbjct: 296 RVHDLRHSHASYLLSNGVNIVILSRRLGHEKVQTTLNIYCHI 337


>gi|293373745|ref|ZP_06620092.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292631400|gb|EFF50031.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 423

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +++L +  G+    + H  RHSFAT + LSNG  + ++ S+LGH  + TTQ+Y  +
Sbjct: 329 LKRLGKKCGITKPLSWHMSRHSFATSVCLSNGVPIETVSSMLGHKDIKTTQVYAKI 384


>gi|298491503|ref|YP_003721680.1| integrase family protein ['Nostoc azollae' 0708]
 gi|298233421|gb|ADI64557.1| integrase family protein ['Nostoc azollae' 0708]
          Length = 193

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 15/170 (8%)

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL---RIQGKGDK 196
             ++  +H       R++AI+ L++  GL  +E +SL    I  +   +   R++   D 
Sbjct: 26  EAMIKAAHSFGTHGVRDAAIILLMFRHGLSTAELVSLKWSQIDLNDGYIEIRRVKHGHDS 85

Query: 197 IRIV--PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           I  +  P L ++R+   +Y +          Q  +F   R  PL+       I +     
Sbjct: 86  IHPLRAPELSALRQIKRDYPE---------TQY-VFVSERKAPLSTRTIPHIIARAGELA 135

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           GL  S   H LRH+   +L S G D R+IQ  LGH  +  T  YT ++ +
Sbjct: 136 GLNESVHPHQLRHACGYYLASQGHDTRAIQDYLGHKNIHHTVRYTQMSPQ 185


>gi|210613944|ref|ZP_03289981.1| hypothetical protein CLONEX_02194 [Clostridium nexile DSM 1787]
 gi|210150904|gb|EEA81912.1| hypothetical protein CLONEX_02194 [Clostridium nexile DSM 1787]
          Length = 659

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 99/249 (39%), Gaps = 32/249 (12%)

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +I A+  + + Q+I   ++ R +  I  F +YLK +K           ++K     P   
Sbjct: 396 QIGAYFKEIQQQEIQAETVNRQILDITKFYEYLKIKK-----------HIKAIPFHPEYY 444

Query: 130 NEK-----QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
            +K        ++ +++ +   H+          I   L+  GLRISE  +L       D
Sbjct: 445 EQKVYPIHHDRSVDEDIYMEILHKLNLFPEELRLIFLHLWATGLRISEVCTLKGDAYYWD 504

Query: 185 QS-----TLRIQGKGDKIRIVP-LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
                    +I+ K DK+  VP +L  V +  ++   +   D        +F+  +G   
Sbjct: 505 GEDAWIKVYQIKMKADKMIPVPFMLYEVMQQYIKKNHIHANDY-------VFQAEQGGAY 557

Query: 239 NPGVF-QRYIRQLRRY--LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             G F +R+  Q +++           H  RH+ AT    +G  +++I+  LGH     T
Sbjct: 558 RIGSFVKRFRTQCKKHKIADCEYVFKTHDYRHTLATQFYDDGVPIQTIRDYLGHVAEEMT 617

Query: 296 QIYTNVNSK 304
           + Y +   K
Sbjct: 618 KQYVDYMPK 626


>gi|126669151|ref|ZP_01740077.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126626384|gb|EAZ97055.1| integrase/recombinase [Marinobacter sp. ELB17]
          Length = 166

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 26/129 (20%)

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILE---YYDLCPFDLNLNIQLPLFRGIRGKPLN----P 240
           +R+ GKG K R+ PL     +A+L      D  P          +F   +G+PL      
Sbjct: 12  VRLHGKGKKDRLCPLWRDTAQALLRLPTVRDGAPGAF-------VFVNRQGQPLTRDGAA 64

Query: 241 GVFQRYIRQLRRYLGLPLSTT-------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            + Q+Y+        +P + T        H LRHS A  LL +G D+  I+  LGH  ++
Sbjct: 65  YLLQKYV-----VAAIPTAPTLQRRKITPHVLRHSCAVALLQSGVDVTVIRDYLGHASIA 119

Query: 294 TTQIYTNVN 302
           TT  Y   N
Sbjct: 120 TTSRYLTTN 128


>gi|115374267|ref|ZP_01461552.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|310818193|ref|YP_003950551.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115368688|gb|EAU67638.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309391265|gb|ADO68724.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 402

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 75/174 (43%), Gaps = 28/174 (16%)

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----------GKG 194
            + E +W      A+L +    GLR  E + L   ++   +  L ++           KG
Sbjct: 215 AASEPEW-----RALLLVALKTGLRQGELIGLQWADLDLQRGKLHVRRTIWRGVVGLPKG 269

Query: 195 DKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            + R V L  S  +A+  +  L  P+         +F    GK L PG+ +  + +  R 
Sbjct: 270 GRERTVDLPASAGEALKGHRHLRGPY---------VFCQPDGKALTPGLLKHPLLRALRM 320

Query: 254 LGLPLSTTA---HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            G+         H LRH++ +HL   G  L++IQ ++GH  +  T+ Y +++ +
Sbjct: 321 AGVSREQGGIGWHDLRHTYGSHLAMRGVPLKAIQELMGHVTIEMTERYAHLSPE 374


>gi|282858447|ref|ZP_06267626.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282588763|gb|EFB93889.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 422

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 72/162 (44%), Gaps = 26/162 (16%)

Query: 167 GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVRKAILEYY--DLCPFD 220
           GL   +   L P++I    D    +RI+ +   +  I+PLLP + K IL  Y  D    D
Sbjct: 257 GLARVDMQRLKPKHITHNADGTEEIRIKRQKTNVEAIIPLLP-IAKQILSLYIKDKKADD 315

Query: 221 L---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSN 276
           L   NL I+   F  +     N G          +   +    T H  RH+F+T + LSN
Sbjct: 316 LIFPNLTIRKASFACV-----NIG----------QICWIEKGLTFHMARHTFSTTICLSN 360

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           G  + ++  +LGH  + TTQIY  +      + M  + D+ H
Sbjct: 361 GISMETLSKMLGHSNIGTTQIYGKITDHKIQEDMTALTDKEH 402


>gi|298346269|ref|YP_003718956.1| phage integrase family protein [Mobiluncus curtisii ATCC 43063]
 gi|298236330|gb|ADI67462.1| phage integrase family protein [Mobiluncus curtisii ATCC 43063]
          Length = 381

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 74/174 (42%), Gaps = 26/174 (14%)

Query: 153 DARNSAILYLLYG-CGLRISEALSLTPQNIMDDQSTLRIQ--------------GKGDKI 197
           D     IL  L G  GLRI EAL+LTP  +  D+  +RI+               K  + 
Sbjct: 198 DGNQLEILVRLLGYTGLRIGEALALTPAALDLDRRIMRIERAVSEVSGRQVFGTPKNGRT 257

Query: 198 RIVPLLPSVRKA--ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R+VP+   +R+   +L        D        LF    G PL     + +       +G
Sbjct: 258 RVVPIPDFLRRDLRVLTRATRGGDDF-------LFATKYGTPLRASNLRLHFDMAALAVG 310

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGD 308
                  H LRH+ AT  +S G +++S+Q +LGH   S T  +Y ++   + GD
Sbjct: 311 -QAGLHIHDLRHTAATLAVSAGANVKSVQRMLGHSSASLTLDVYADLFEPDLGD 363


>gi|226349907|ref|YP_002777020.1| putative integrase/recombinase [Rhodococcus opacus B4]
 gi|226245822|dbj|BAH47089.1| putative integrase/recombinase [Rhodococcus opacus B4]
          Length = 315

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 94/234 (40%), Gaps = 28/234 (11%)

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
           G     R +  ++ F +YL      TE   + +   ++    P   +      L+     
Sbjct: 67  GSSVWPRRMGAVRGFARYLSGIDPATEVPPIGLLPSRRRWRPPFIYSSDDIAALLGAAAA 126

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPL 202
             S       A  S +  LL   G+R+ EAL+L   +I  DD   L  + K  K R VPL
Sbjct: 127 LPSPRRA---ATYSTLFGLLAATGMRVGEALTLDSSDIDWDDGVVLVRESKFGKSRNVPL 183

Query: 203 LPSVRKAILEY------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
             S  +A+  Y      +D  P + +  + L   R I        VF+ +   LRR  G+
Sbjct: 184 SDSTTEALARYASLREGFDRTPGNESYFVSLTGRRVIYES-----VFEVFA-DLRRSSGI 237

Query: 257 PLSTTA----HTLRHSFATHLL----SNGGDLRS----IQSILGHFRLSTTQIY 298
              +T     H LRH+FA  +L     +GGD+ +    + + LGH    +T  Y
Sbjct: 238 GRQSTVTPRIHDLRHTFAVTVLLQWYRDGGDVAARLPRLSTYLGHRDPRSTYWY 291


>gi|16800323|ref|NP_470591.1| hypothetical protein lin1254 [Listeria innocua Clip11262]
 gi|16800811|ref|NP_471079.1| hypothetical protein lin1743 [Listeria innocua Clip11262]
 gi|157325348|ref|YP_001468768.1| gp64 [Listeria phage B054]
 gi|16413728|emb|CAC96485.1| lin1254 [Listeria innocua Clip11262]
 gi|16414230|emb|CAC96974.1| lin1743 [Listeria innocua Clip11262]
 gi|66733353|gb|AAY53169.1| gp64 [Listeria phage B054]
          Length = 314

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 16/160 (10%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-----KIRIVPLLPSVRKAI 210
           N   L L+   G+R +EAL+LTP +     +T+ I    D       +      S R+  
Sbjct: 137 NDWFLLLIAKTGMRYAEALALTPSDFDWVNATVTIDKSWDYKTHRGFKKTKSTASDREIA 196

Query: 211 LEYY---DLCPFDLNLNIQLPLF-----RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           +++       P   +L    P+F     RG   K  N      Y+    + L + +  + 
Sbjct: 197 IDWQIVGQFKPLIQDLPANDPIFIEKTERGTYKKQYN-STMNNYLEAKCKTLTITV-ISL 254

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNV 301
           H LRH+ A+ LL+ G  + +I + LGH  +  TQ IY +V
Sbjct: 255 HALRHTHASVLLAEGVSIHTISARLGHADVGVTQEIYAHV 294


>gi|258509091|ref|YP_003171842.1| phage-related integrase [Lactobacillus rhamnosus GG]
 gi|257149018|emb|CAR87991.1| Phage-related integrase [Lactobacillus rhamnosus GG]
 gi|259650380|dbj|BAI42542.1| phage integrase [Lactobacillus rhamnosus GG]
          Length = 360

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 62/149 (41%), Gaps = 13/149 (8%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-----KIRIVPLLPSVRKAILEY 213
           I+Y+    G+R +E L LT  +I      + I    D       +      SVR  +L  
Sbjct: 189 IIYIAAVTGMRYAEVLGLTKSDIDLTSGEISINKTWDYKYHTGFKKTKNTSSVRSVVLNP 248

Query: 214 YDLCPFDLNLNI------QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             +      L +      Q P+F    G  L      + + Q  + LGLP   T H LRH
Sbjct: 249 ASIMKLAHFLELHNPESSQTPIFAS-NGHSLVSAEINKVLTQKLKSLGLP-RITFHGLRH 306

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           + A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 307 THASILLYQGVSVLSVSKRLGHSNITTTQ 335


>gi|255103342|ref|ZP_05332319.1| integrase [Clostridium difficile QCD-63q42]
 gi|255652432|ref|ZP_05399334.1| integrase [Clostridium difficile QCD-37x79]
          Length = 370

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 21/160 (13%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL------PSVRK--AILEY 213
           L  G GLR+SE L LT  NI  D++T+ +     ++    +L       SVRK  A +E 
Sbjct: 192 LAIGLGLRLSEVLGLTWDNIDFDENTITVNKITSRLDGSVILKEPKTESSVRKIFAPIEL 251

Query: 214 YDLCP-FDLNLNIQL----------PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            +L   + L  N +L           LF   +G P+   V  +  R+      LP     
Sbjct: 252 MNLLKNYRLEQNKKLLRSIVRNEYNLLFFDRKGNPIAEDVMSKKFRKFLENNDLP-HIRF 310

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           H LRHS  T L+++   ++ I   +GH  ++TT  +Y++V
Sbjct: 311 HDLRHSHVTLLINSKVPIKVISERVGHSNINTTLNVYSHV 350


>gi|254433421|ref|ZP_05046929.1| site-specific recombinase, phage integrase family protein
           [Nitrosococcus oceani AFC27]
 gi|207089754|gb|EDZ67025.1| site-specific recombinase, phage integrase family protein
           [Nitrosococcus oceani AFC27]
          Length = 254

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 33/46 (71%), Gaps = 3/46 (6%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPL 202
           ++ LLYG GLRISEA+ L  Q++  D  Q+T+R  GKGDK R+ PL
Sbjct: 132 VVKLLYGSGLRISEAVRLRVQDLDYDYKQTTVR-SGKGDKDRVTPL 176


>gi|171779414|ref|ZP_02920378.1| hypothetical protein STRINF_01259 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282031|gb|EDT47462.1| hypothetical protein STRINF_01259 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 370

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 111/290 (38%), Gaps = 57/290 (19%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRT----------QKIGDRSLKRSLSGIKSFLKYLKKRKI 107
           I + T+  LS  ++ +F+   R           Q +   ++ R+LS + S  KYL +   
Sbjct: 80  IELGTLEHLSKKDMESFVLYLRERPSLNTYSTKQGVSQTTINRTLSALSSLFKYLTEEVE 139

Query: 108 TTESNILNMRNLKKSNSL--------PRALNEKQALTLVDNVLLHTSHETKWID------ 153
               +    RN+ K  S          RA N K  L L D  +    +  K         
Sbjct: 140 DENGDPYFYRNVMKKISTKKKKETLAARAENIKGKLFLGDETMAFIEYIDKEYQNKLSHR 199

Query: 154 ---------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
                     R+ AI+ LL   G+R+SEA++L  +++  +   + I  KG K   V +  
Sbjct: 200 ALSSFQKNKERDLAIISLLLASGVRLSEAVNLDLKDLHLNMMVIEITRKGGKRDSVNV-A 258

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRG-----------IRGKP--LNPGVFQRYIRQLR 251
           +  K  LE Y        L I+ P ++             RG P  ++    ++ + +  
Sbjct: 259 AFAKPYLEDY--------LKIRAPRYKAEKQDQALFLTEYRGVPNRIDASSIEKLVAKYS 310

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +     +  T H LRH+ AT L         +   LGH     T +YT++
Sbjct: 311 Q--DFKVRVTPHKLRHTLATRLYGATKSQVLVSHQLGHASTQVTDLYTHI 358


>gi|116871900|ref|YP_848681.1| bacteriophage integrase, putative [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116740778|emb|CAK19898.1| bacteriophage integrase, putative [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 309

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 13/147 (8%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-KIRIVPLLP-----SVRKAILE 212
            + L+   GLR SEAL+LTP +    +  + I    D K+      P     S RK  ++
Sbjct: 141 FILLIIKTGLRFSEALALTPSDFDFSKQKIIINKTWDYKMVTGSFQPTKNESSNRKIQID 200

Query: 213 YYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +     F   + ++    P+F  ++ +  N  +  R ++ L     +P + T H+LRH+ 
Sbjct: 201 WQLAMQFSQLIKMKDPDKPIF--VKSRVFNSTINNR-LKVLCENANIP-TITVHSLRHTH 256

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           A+ LL  G  + S+ + LGH  ++TTQ
Sbjct: 257 ASLLLFAGVSIASVANRLGHSSMTTTQ 283


>gi|13476425|ref|NP_107995.1| integrase [Mesorhizobium loti MAFF303099]
 gi|14027186|dbj|BAB54140.1| integrase [Mesorhizobium loti MAFF303099]
          Length = 359

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 24/159 (15%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           DA   ++  +  GC  R+ EAL L   +I + + +  I   G + R +P+   V++ I  
Sbjct: 163 DAYRLSVFLVDSGC--RLGEALGLIWNDIQEHRVSFWITKSG-RSRTIPMTERVKEVI-- 217

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL------RRYLGLPLSTTAHTLR 266
                        +LP   G R K     + Q   R +         LG       H LR
Sbjct: 218 -------------KLPPTEGRRPKGPFTKLSQAQYRAIWNDAKAEVGLGADDQVVPHILR 264

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           H+ A+ L+  G D+R +Q  LGH  LS T  Y ++ + +
Sbjct: 265 HTCASRLVQGGIDIRRVQMWLGHQTLSMTMRYAHLATND 303


>gi|262381071|ref|ZP_06074209.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262296248|gb|EEY84178.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 310

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           F R ++ L++  G+    T++T+RHSFA  L      +  I  +LGH  + TTQIY
Sbjct: 227 FNRNLKALKKAAGIVSDVTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIY 282


>gi|325288106|ref|YP_004263896.1| integrase family protein [Cellulophaga lytica DSM 7489]
 gi|324323560|gb|ADY31025.1| integrase family protein [Cellulophaga lytica DSM 7489]
          Length = 364

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 29/47 (61%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           G+  + T H  RH++AT  L+ G D+ ++  +LGH  L TTQIY  V
Sbjct: 302 GITKTITFHCARHTYATLQLTLGTDIYTVSKLLGHKELRTTQIYAKV 348


>gi|323484024|ref|ZP_08089395.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
 gi|323402641|gb|EGA94968.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
          Length = 283

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 12/163 (7%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           LLH + E    + R   ++  +   GLR+SE   LT + +   ++ +  +GK   + + P
Sbjct: 117 LLHAAKEK---NERLYLVMQSICSVGLRVSELKFLTVEAVHRGRTVVNNKGKMRTVVLPP 173

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            L  + K       +    +        F    G+PL+       +++L +  G+     
Sbjct: 174 KLCLILKKYCRRQRVTGGSI--------FVSRTGRPLDRSNIWSAMKELAKAAGVAADKV 225

Query: 262 -AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             H LRH FA+       D+  +  ILGH  ++TT+IYT   +
Sbjct: 226 FPHNLRHLFASVYYERFQDIVKLADILGHSNVNTTRIYTTATA 268


>gi|281423749|ref|ZP_06254662.1| integrase [Prevotella oris F0302]
 gi|282881646|ref|ZP_06290309.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281304405|gb|EFA96502.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281402151|gb|EFB32982.1| integrase [Prevotella oris F0302]
          Length = 411

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 18/151 (11%)

Query: 160 LYLLYG-CGLRISEALSLTPQNI---MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYY 214
           LYL     GL  S+  SLT +NI    D+   + I + K   +  + LL    + I +Y 
Sbjct: 249 LYLFCAFTGLSFSDMRSLTEENIRTYFDEHEWININRQKTGVVSNIRLLDIANRIIGKYR 308

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL- 273
            LC  D  +   +P +                IR + +  G+    T H  RH+ AT + 
Sbjct: 309 GLCE-DGRI-FPVPHYNTCLAG----------IRAVAKRCGITKHITWHQSRHTAATTVF 356

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           LSNG  + ++ S+LGH  + TTQIY  +  +
Sbjct: 357 LSNGVPIETVSSMLGHKSIKTTQIYAKITKE 387


>gi|149919060|ref|ZP_01907545.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
 gi|149820213|gb|EDM79632.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
          Length = 361

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 28/42 (66%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           H LRH+FA+HL+  G  LR++Q +LGH  +  T  Y +++ K
Sbjct: 296 HDLRHTFASHLVMRGVPLRAVQELLGHSTIEMTMRYAHLSPK 337


>gi|153830812|ref|ZP_01983479.1| integrase [Vibrio cholerae 623-39]
 gi|148873696|gb|EDL71831.1| integrase [Vibrio cholerae 623-39]
          Length = 392

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 6/74 (8%)

Query: 229 LFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           +F+G+R     N  + Q  IR      G+    T H  RH+FA + L+ G D+ S+  +L
Sbjct: 300 VFKGLRYDSYSNVALVQWAIRA-----GITKHVTFHAGRHTFAVNQLARGLDIYSLSRLL 354

Query: 288 GHFRLSTTQIYTNV 301
           GH  L TT+IY ++
Sbjct: 355 GHSELRTTEIYADI 368


>gi|121610295|ref|YP_998102.1| phage integrase family protein [Verminephrobacter eiseniae EF01-2]
 gi|121554935|gb|ABM59084.1| phage integrase family protein [Verminephrobacter eiseniae EF01-2]
          Length = 191

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 38/179 (21%)

Query: 167 GLRISEALSLTPQNIMDDQST-------LRIQGKGDKIRIVPLLPSVRKAILEY---YDL 216
           GLRISE  + +  +    +S        L I+GKG++ R +P    +   ++ Y   ++L
Sbjct: 12  GLRISEVCNNSMGDFYWRRSADRRERWWLEIRGKGERTRGIPATDELVSELMRYRKAHEL 71

Query: 217 CPFDLN---LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL--------------- 258
            P       L + +PL  G R  P+        ++ + R   + L               
Sbjct: 72  SPLPREGDILPLLVPLIGGAR--PMGRSGVHELVKNIFRKTAVRLRARGPDHEAAAAHVE 129

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
             +AH +RH+  TH  S+  DL+ ++  LGH  ++TT IY +      GD   + +DQT
Sbjct: 130 QASAHWMRHTAGTHQ-SDNMDLKVVRDNLGHANIATTSIYIHTE----GD---KRHDQT 180


>gi|90962807|ref|YP_536722.1| DNA integration/recombination/inversion protein [Lactobacillus
           salivarius UCC118]
 gi|301300033|ref|ZP_07206257.1| site-specific recombinase, phage integrase family [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|90822001|gb|ABE00639.1| DNA integration/recombination/inversion protein [Lactobacillus
           salivarius UCC118]
 gi|300215420|gb|ADJ79833.1| DNA integration/recombination/inversion protein [Lactobacillus
           salivarius CECT 5713]
 gi|300852367|gb|EFK80027.1| site-specific recombinase, phage integrase family [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 309

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 11/147 (7%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-KIRIVPLLP-----SVRKAILE 212
            +YL+   GLR +EAL+LTP +       + +    + K +     P     S RK  ++
Sbjct: 140 FIYLVSKTGLRFAEALALTPSDFDYKNKQIIVNKSWNYKFKNYGFQPTKNKSSNRKVFVD 199

Query: 213 YYDLCPF-DLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
              L  F  LN   +   P+F     K  N  V  R +  L ++  +P + + H LRH+ 
Sbjct: 200 DNTLKAFRKLNKRKDPNQPIFVSQGQKIFNSTVNSR-VETLCKHANIP-TISIHGLRHTH 257

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 258 ASLLLFQGVSVLSVSQRLGHANVTTTQ 284


>gi|73662951|ref|YP_301732.1| hypothetical protein SSP1642 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495466|dbj|BAE18787.1| probable truncated integrase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 242

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 9/150 (6%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI--RIVPLLPSVRKAILE 212
           R+S  L+++   G RIS  L++  + I   ++ L I  + + +  R + +     K I+E
Sbjct: 80  RSSLALFIMICTGCRISGVLNMKYEYINQVKNELFIDERKNDVSPRTLTIAKDDMKHIIE 139

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
             +     L LN +  LF    G  L      + ++Q  +   +    T+H LRH+  ++
Sbjct: 140 MIE----KLKLNTKGLLFNSF-GTTLTINAVNKQLKQACKLHDIK-EITSHALRHTHCSY 193

Query: 273 LLSNGGDLRSIQSILGHFRLS-TTQIYTNV 301
           LL+N   +  I   LGH  +S TT+IY+++
Sbjct: 194 LLANDVSIYYISKRLGHKNISVTTEIYSHL 223


>gi|330985498|gb|EGH83601.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. lachrymans str. M301315]
 gi|331008203|gb|EGH88260.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 321

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 111/253 (43%), Gaps = 30/253 (11%)

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            + A ++  R       +    ++ I+  +    +  + +   +L +R++K  +    A 
Sbjct: 71  HVTALVATLREDDYAPNTTSLYVNAIRGVMNEAWRHDLISHEQLLKIRSIKPVSGTRLAK 130

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
                 TL+  ++   + + +    R++AI+ +LYG G+R SE+++L    I   + +LR
Sbjct: 131 GRNIRRTLIRELMQACAADPRPQGRRDAAIIAILYGSGMRKSESVNLDLSQIDFAERSLR 190

Query: 190 IQGKGDKIRIVPLLPS-VRKAILEYYDL---C--------PFDLNLNIQLPLFRGIRGKP 237
           + GKG+K +++   P    KA+ ++ +L   C        PF  N        R  RG  
Sbjct: 191 VLGKGNK-QLIKYAPEWAFKALNDWLELRRSCLQPGQGDDPFLFN--------RIRRGSH 241

Query: 238 LNPGVFQRY-----IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +      ++      +Q  R +G  ++   H  R SF T ++    DL   Q +  H  +
Sbjct: 242 ITRDRITKHAIYFIAKQRGRQVG--VNIMPHDFRRSFITRVIEE-FDLSIAQKLAHHTHI 298

Query: 293 STTQIYTNVNSKN 305
           STT  Y ++ S+N
Sbjct: 299 STTASY-DMRSEN 310


>gi|199599691|ref|ZP_03213060.1| integrase [Lactobacillus rhamnosus HN001]
 gi|199589415|gb|EDY97552.1| integrase [Lactobacillus rhamnosus HN001]
          Length = 360

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 13/149 (8%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-----KIRIVPLLPSVRKAILEY 213
           I+Y+    G+R +E L LT  +I      + I    D       +      SVR  +L+ 
Sbjct: 189 IIYIAAVTGMRYAEVLGLTKSDIDLTGGEISINKTWDYKYHTGFKKTKNTSSVRAVVLDT 248

Query: 214 YDLCPFDLNLNI------QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             +      L +      Q P+F      P++  + +   ++L+  LGLP   T H LRH
Sbjct: 249 ASIMKLAKFLKLHAPETPQTPIFVSNGHSPVSAEINKILTKKLKS-LGLP-RITFHGLRH 306

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           + A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 307 THASILLYQGVSVLSVSKRLGHSNITTTQ 335


>gi|148724460|ref|YP_001285426.1| integrase [Cyanophage Syn5]
 gi|145588105|gb|ABP87924.1| integrase [Synechococcus phage Syn5]
          Length = 262

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 17/147 (11%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           A+L   Y  GLR  E LSL  +++ D+   + +  KGD  R VPL P +   I       
Sbjct: 124 AVLTAAY-TGLRQDELLSLRAEHVQDNGLHV-VDSKGDD-RFVPLHPKLITII------- 173

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
                 N +L   R      LN        ++ R   GL      H+LRHSF T  L+  
Sbjct: 174 ------NRRLTNDRLFGDDWLNKDQLYGAFKKARSAAGLSDKKVWHSLRHSFGT-FLAET 226

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSK 304
                I+ ++GH  + T+QIY + N +
Sbjct: 227 QPANVIKDLMGHKSIVTSQIYIHSNPE 253


>gi|42516778|emb|CAF05907.1| DNA integrase [Pseudomonas aeruginosa]
          Length = 295

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 107/280 (38%), Gaps = 58/280 (20%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
           +    FQR  ++     G+    T HTLRHSFAT LL +G
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSG 291


>gi|330470281|ref|YP_004408024.1| integrase family protein [Verrucosispora maris AB-18-032]
 gi|328813252|gb|AEB47424.1| integrase family protein [Verrucosispora maris AB-18-032]
          Length = 412

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 64/159 (40%), Gaps = 35/159 (22%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI--------------QGKGDKIRIVPLLPSVR 207
           L  GCGLR  E  +++P +I   +  L +                KG K R VPL  SV 
Sbjct: 211 LGAGCGLRQGEIFAVSPGDIDPTRPVLHVTRQIKLVRGVLIFAPPKGGKSREVPLPSSVA 270

Query: 208 KAILEYYDLC---------------PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
             + ++   C               P  + L +  P    +     N GV++  +R    
Sbjct: 271 GRLRKHAQDCQPVAVTLPWGSLTGEPRTVELYLTNPAGTALTRSMFNSGVWKPAVRAT-- 328

Query: 253 YLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
             G+P       H LRH++A+ LL  G  ++++ + LGH
Sbjct: 329 --GIPDDRHNGMHVLRHTYASVLLDAGESIKALSAYLGH 365


>gi|296393237|ref|YP_003658121.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296180384|gb|ADG97290.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 407

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 235 GKPLNPGVFQRYIRQLRRY--LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           G+P+ P   +R IR  R    + LP + T H LRH  A+ L+++G D++++Q+ + H   
Sbjct: 302 GEPVPPWQIERAIRDARESGLVDLPETFTFHDLRHYNASWLIASGADIKTVQARVRHASA 361

Query: 293 STT 295
            TT
Sbjct: 362 KTT 364


>gi|257484096|ref|ZP_05638137.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 341

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 105/231 (45%), Gaps = 30/231 (12%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           ++ I+  +    +  + +   +L +R++K  +    A       TL+  ++   + + + 
Sbjct: 113 VNAIRGVMNEAWRHDLISHEQLLKIRSIKPVSGTRLAKGRNIRRTLIRELMQACAADPRP 172

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS-VRKAI 210
              R++AI+ +LYG G+R SE+++L    I   + +LR+ GKG+K +++   P    KA+
Sbjct: 173 QGRRDAAIIAILYGSGMRKSESVNLDLSQIDFAERSLRVLGKGNK-QLIKYAPEWAFKAL 231

Query: 211 LEYYDL---C--------PFDLNLNIQLPLFRGIRGKPLNPGVFQRY-----IRQLRRYL 254
            ++ +L   C        PF  N        R  RG  +      ++      +Q  R +
Sbjct: 232 NDWLELRRSCLQPGQGDDPFLFN--------RIRRGSHITRDRITKHAIYFIAKQRGRQV 283

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           G  ++   H  R SF T ++    DL   Q +  H  +STT  Y ++ S+N
Sbjct: 284 G--VNIMPHDFRRSFITRVIEE-FDLSIAQKLAHHTHISTTASY-DMRSEN 330


>gi|325689712|gb|EGD31716.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK115]
          Length = 356

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 115/305 (37%), Gaps = 68/305 (22%)

Query: 57  KITIQTIRQLSYTEIRAFISKRR---------TQK-IGDRSLKRSLSGIKSFLKYLKKRK 106
           +I +  +  +S  ++ AFI   R         TQ  +   ++ R+LS + S  KYL +  
Sbjct: 65  EIPLSVLENMSKKDMEAFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLYKYLTEEV 124

Query: 107 ITTESNILNMRNLKKSNSL--------PRALNEKQALTLVDNVLLHTSHETKWIDA---- 154
              +      RN+ K  +          RA N KQ L L D     T    ++ID     
Sbjct: 125 ENEQGEPYFYRNVMKKVATKKKKETLAARAENIKQKLFLGD----ETEEFLQYIDTEYPK 180

Query: 155 ---------------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                          R+ AI+ LL   G+R+SEA++L  ++I      + +  KG K   
Sbjct: 181 KLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLKDINLKMMVIEVTRKGGKRDS 240

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-----------IRGKP--LNPGVFQRY 246
           V +    +  + EY         LNI+   ++             RG P  ++    ++ 
Sbjct: 241 VNVAAFAKPYLEEY---------LNIRSKRYKAEKTDTAFFLTEYRGTPNRIDASSVEKM 291

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV---NS 303
           + +        +  T H LRH+ AT L         +   LGH     T +YT++     
Sbjct: 292 VAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQ 349

Query: 304 KNGGD 308
           KN  D
Sbjct: 350 KNALD 354


>gi|319902961|ref|YP_004162689.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319417992|gb|ADV45103.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 410

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 14/140 (10%)

Query: 167 GLRISEALSLTPQNIMDDQS----TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           GL   +   L+ ++I+ D +      + + K + +  +PLL  +   IL  Y   P  L 
Sbjct: 260 GLAFIDVQQLSAEHIIKDNNGHYWIRKARQKTNNMCNIPLL-DIPMQILNKYSNNPQCLK 318

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLR 281
             + LP+       P N  +   Y++++     +    + HT RHS+AT + L+NG  + 
Sbjct: 319 KQVLLPV-------PCNQKM-NSYLKEIADLCNINKRMSTHTARHSYATSVCLANGVSIE 370

Query: 282 SIQSILGHFRLSTTQIYTNV 301
           ++  +LGH  +  TQ Y  V
Sbjct: 371 NVAKMLGHSNIKMTQHYAKV 390


>gi|294777960|ref|ZP_06743395.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294448169|gb|EFG16734.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 354

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 18/148 (12%)

Query: 163 LYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           L+ C   LRIS+ L+L  ++I+D  +       G K   V ++    KA     D+ P  
Sbjct: 206 LFSCMTSLRISDILALRWEDIVDYSA-------GGKC--VHIITQKNKA----EDIIPIS 252

Query: 221 ---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
              L L       +G+  K L     Q  +++  R  G+  + T H+ R +FAT   + G
Sbjct: 253 EEALGLIGYSSDKKGLVFKGLMRSWTQMPMKEWIRSAGITKNITFHSYRRTFATLQGAAG 312

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            D+R+IQSI+ H  ++TT  Y  V   N
Sbjct: 313 TDIRTIQSIMAHKSITTTMRYMKVVDSN 340


>gi|269122520|ref|YP_003310697.1| integrase family protein [Sebaldella termitidis ATCC 33386]
 gi|268616398|gb|ACZ10766.1| integrase family protein [Sebaldella termitidis ATCC 33386]
          Length = 344

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 72/149 (48%), Gaps = 14/149 (9%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEY 213
             IL ++Y  G+R+ E L+L  ++I   + T+ +   + +    RI+P+ P +++ I   
Sbjct: 191 DTILIMIY-TGMRVGEMLNLRKEDINLIEQTIIVRTSKTEAGTNRIIPIHPRIKELIQNR 249

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG-LPLSTTAHTLRHSFATH 272
           Y     D        L  G++ +     V+   IR     +  L +  T H  RH+FAT 
Sbjct: 250 YKNSNSD-------HLITGLQNRNSISYVYYD-IRLFNPIMDELNIKHTPHDCRHTFATR 301

Query: 273 LLSNGGDLRSIQSILGHFRLS-TTQIYTN 300
           L   GG+  +I+ ++GH   + T ++YT+
Sbjct: 302 LNDAGGNATAIKKMIGHESFALTEKVYTH 330


>gi|224024631|ref|ZP_03642997.1| hypothetical protein BACCOPRO_01358 [Bacteroides coprophilus DSM
           18228]
 gi|224017853|gb|EEF75865.1| hypothetical protein BACCOPRO_01358 [Bacteroides coprophilus DSM
           18228]
          Length = 410

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 119/267 (44%), Gaps = 39/267 (14%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLK-RSLSG--IKSFLKYLKKRKITTESNILN-MR 117
           T+R+  Y   + ++++   QK G   L    ++G  +++F  YLK  K   ++ ++  M+
Sbjct: 136 TVRR--YESCKRYLAELIRQKFGKDDLPLVEVNGELVRAFEFYLKTEKECQQNTVIRYMK 193

Query: 118 NLKKSNSLPRA-------------LNEKQAL---TLVDNVL--LHTSHETKWIDARNSAI 159
            LKK  +L  A              +EK+ +     +D +L   H     + I       
Sbjct: 194 CLKKITNLALANEWIAKDPFIGIKFHEKEVIREFLTMDELLTIYHKEFPLERIAVVRDVF 253

Query: 160 LYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD 215
           ++  +  GL   +   L+P++I+ D+   L I+    K +    +PLL    + + +Y D
Sbjct: 254 IFAAFT-GLAFIDVQQLSPEHIVKDNNGNLWIRKPRQKTKNMCNIPLLDIPLEILRKYAD 312

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
             P      + LP+       P N  +   Y++++     +  + T HT RHS+AT + L
Sbjct: 313 Y-PACKKKGVLLPV-------PCNQKM-NSYLKEIADLCLIKKNLTTHTARHSYATSVCL 363

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +NG  + ++  +LGH  +  TQ Y  V
Sbjct: 364 ANGVSIENVAKMLGHSNIKMTQHYARV 390


>gi|304394965|ref|ZP_07376849.1| integrase family protein [Pantoea sp. aB]
 gi|304357218|gb|EFM21581.1| integrase family protein [Pantoea sp. aB]
          Length = 94

 Score = 44.3 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 2/48 (4%)

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             +PL  T HT RHS+A H+L  G  L+++Q+++ H  + +T++YT V
Sbjct: 21  FSVPL--TPHTFRHSYAMHMLFAGIPLKALQNLMVHKSMKSTEVYTKV 66


>gi|298241232|ref|ZP_06965039.1| integrase domain protein SAM domain protein [Ktedonobacter
           racemifer DSM 44963]
 gi|297554286|gb|EFH88150.1| integrase domain protein SAM domain protein [Ktedonobacter
           racemifer DSM 44963]
          Length = 177

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 87/192 (45%), Gaps = 22/192 (11%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           F  +  RQ + Q LE     ++ T +SY  D    L         +I    I  L+    
Sbjct: 7   FPSITVRQAFAQFLEGS-SFARRTRESYAEDLHPLLT--------QIGQAPITALTDDVA 57

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           R+F++ +  + +   +  R L+ ++SF  +L  R+  TE+ +  +    +  +  RAL+ 
Sbjct: 58  RSFLATQ--EALAPATYNRRLAALRSFSGFLFNRRWLTEALLEGVERKPERKAEARALDA 115

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           ++    V+ VL          + R+ A+ +L Y  GLR  EAL++   +I     ++ + 
Sbjct: 116 QK----VEAVLRGIE------NPRDRALFWLTYDGGLRCQEALAIDIDDISWSDRSILLH 165

Query: 192 GKGDKIR-IVPL 202
           GKG + R I P+
Sbjct: 166 GKGGRSREIAPI 177


>gi|289549366|ref|YP_003474354.1| integrase family protein [Thermocrinis albus DSM 14484]
 gi|289182983|gb|ADC90227.1| integrase family protein [Thermocrinis albus DSM 14484]
          Length = 288

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 98/228 (42%), Gaps = 52/228 (22%)

Query: 92  LSGIKSFLKYLKKRKITT-------ESNI------LNMRNLKKSNSLPRALNEKQALTLV 138
           LS +K F K+  +R   +       E+ I      +  RN++++   P+AL  ++ L+ +
Sbjct: 67  LSALKHFFKFAVRRGYMSREAYTKLEAAIEELRDEIGRRNVRRA---PKALT-REELSRI 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQG--- 192
                +T +E          +  L    G+R+SE   L   N   D+S    LR+     
Sbjct: 123 MESTKNTVYER---------VYTLFLYSGIRLSEYKHLKKDNFFMDKSGIYWLRLPAYAT 173

Query: 193 KGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           KG+K R+ P++   ++   +  +     L  ++ NL +             N G  Q Y 
Sbjct: 174 KGNKERMAPIMGPTKEETYQVTEKLARWLENYEENLVV-------------NAGSLQVYT 220

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            +L   L +P S   H+ RH++ T+L+++G     ++   GH  + TT
Sbjct: 221 YRLSHRLNIPFSL--HSFRHTYITNLINSGFPAEVVKEFAGHSHVKTT 266


>gi|255505492|ref|ZP_05346451.3| site-specific recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
 gi|255267569|gb|EET60774.1| site-specific recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
          Length = 143

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 4/75 (5%)

Query: 229 LFRGIRGKPLNPG-VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           LF    GKP  P  V+  + R +++Y G P   T H LRHS A+ L   G   + IQ  L
Sbjct: 63  LFTWEDGKPFAPDFVYHHFTRLIKKY-GKP-GFTFHNLRHSTASMLYEKGWHPKDIQEWL 120

Query: 288 GHFRLSTT-QIYTNV 301
           GH    TT  IYT++
Sbjct: 121 GHADFYTTMNIYTHL 135


>gi|168822428|ref|ZP_02834428.1| gp27 [Salmonella enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205341168|gb|EDZ27932.1| gp27 [Salmonella enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
          Length = 349

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 90/223 (40%), Gaps = 55/223 (24%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE--KQALTLV 138
           +++G+ SL   L GI+ F      ++   E + L +  L +   L RA  +  K+ LT++
Sbjct: 151 KRLGEWSLPNPLDGIRVF------KEAEKEMSWLTLSQLPE---LFRACEQYGKEDLTMI 201

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             V L T                     G R  EA  LT   +   + T   + KG K R
Sbjct: 202 VKVCLAT---------------------GARWGEAERLTRPQLSPYKLTF-TKTKGKKNR 239

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR-RYLGLP 257
            VP+   +       YD          +L   +G   KP     +Q + + L+   + L 
Sbjct: 240 TVPIPKWL-------YD----------ELSERQGRMFKP----CYQEFKKMLKLTNIELT 278

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                H LRH+F  H + NGG++  +Q ILGH  +  T  Y +
Sbjct: 279 EGQKTHVLRHTFGAHFMMNGGNILVLQKILGHANIRETMKYAH 321


>gi|120401481|ref|YP_951310.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|120404557|ref|YP_954386.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|120406443|ref|YP_956272.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119954299|gb|ABM11304.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119957375|gb|ABM14380.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119959261|gb|ABM16266.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 647

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 127/328 (38%), Gaps = 74/328 (22%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           +S E      L F  + T     + ++R L  + I  ++   RT+  G R  +R+ +G  
Sbjct: 235 KSVESLINDLLPFAEYLTAHHPDLTSLRGLDRSCIEGYLKWNRTR--GWRG-QRAAAGAG 291

Query: 97  SFLKYLKKRKITTESNILNMRNL------------------------KKSNSLPRALNEK 132
             +          +S +L++RNL                        K    LPRAL   
Sbjct: 292 RTVS-----AAVAQSAVLSLRNLLDDITAWGWAQAPPRRLVFAADVPKLDQPLPRALAPD 346

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD---DQSTLR 189
                VD  +++     +   AR    L +L G GLR  E L L   +I+D     + L+
Sbjct: 347 -----VDAAVMNAVAHLQDPFARIG--LTVLRGAGLRAGELLDLELGSIIDYGPAGTWLK 399

Query: 190 IQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR-GIRGKPLNPGVFQRYI 247
           +  GK    R+VPL  +   A+ E+  L       +  LP  R G+    L   +F R+ 
Sbjct: 400 VPLGKLATERMVPLSAATLAALDEWVAL----RGTHRPLPHPRTGV----LTDFLFTRHG 451

Query: 248 RQL------------------RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           R+L                   R  G  L  T H LRH++AT L + G  L+++ S+LGH
Sbjct: 452 RRLGYTRLRNGLLTAAESAGLHRPDGGVLMVTPHQLRHTWATELANAGMSLQALMSLLGH 511

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                T  Y  + S      +   YD+ 
Sbjct: 512 VTPQMTIRYATLASPT----LRAAYDEA 535


>gi|317500069|ref|ZP_07958304.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316898554|gb|EFV20590.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 397

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 27/207 (13%)

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           N  + K S  L     EK ALT      L +  +T  +  ++   + +L   GLRISE  
Sbjct: 171 NPFDFKLSEVLENDTKEKVALTEEQEQALLSFIKTDNVYHKHYDDVLILLKTGLRISELC 230

Query: 175 SLTPQNI-------MDDQSTLRIQGKG---------DKIRIVPL----LPSVRKAILEYY 214
            LT  +I       + D   L+ + +G           IR VPL    + + ++ + +  
Sbjct: 231 GLTVADIDFKNEVVIIDHQLLKSKEQGYYIETPKTKSGIRQVPLSRETIQAFQRVMKKRP 290

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNP----GVFQRYIRQL-RRYLGLPLS-TTAHTLRHS 268
              PF ++      LF   +GKP        +F R +++  + +   PL   T HTLRH+
Sbjct: 291 KAEPFVIDGQSNF-LFVNHKGKPKVAIDYNALFVRMVKKYNKHHKDNPLPHITPHTLRHT 349

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTT 295
           F T L S   + + +Q I+GH  +S T
Sbjct: 350 FCTRLASKNMNPKDLQYIMGHSNISIT 376


>gi|301307765|ref|ZP_07213721.1| integrase [Bacteroides sp. 20_3]
 gi|300834108|gb|EFK64722.1| integrase [Bacteroides sp. 20_3]
          Length = 211

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 16/88 (18%)

Query: 225 IQLPLFRG---IRGKPLNPG----------VFQRYIRQLRRYL---GLPLSTTAHTLRHS 268
           + +PL  G   I G+PL  G           ++   + ++R++   G+    + H  RHS
Sbjct: 102 VVIPLNDGLVSIIGEPLADGNKDVLIFNLPSYESCCKSVKRWVKRSGIDKHISWHCARHS 161

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           FA ++L+NG +++++ S+LGH  L  T+
Sbjct: 162 FAVNILNNGANIKTVASLLGHSGLKHTE 189


>gi|124008447|ref|ZP_01693141.1| phage integrase family protein [Microscilla marina ATCC 23134]
 gi|123986095|gb|EAY25938.1| phage integrase family protein [Microscilla marina ATCC 23134]
          Length = 425

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 100/251 (39%), Gaps = 32/251 (12%)

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
            SY   RA++   + + +   +    L+ IK+   YL+        N  + ++L +   +
Sbjct: 176 FSYVATRAYLEHCQYKDLAAHTRALYLTCIKNVAAYLQDHSHEYNINDDDYKDLGRIQRI 235

Query: 126 PRA-----------LNEKQ-ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
            RA           LNE++  L L   V    ++   W          L+  CGLRI E 
Sbjct: 236 KRAKLSTQRYYKDPLNEQERELLLSSEVSPSPTYRAMWS---------LMAFCGLRIKEV 286

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIR-IVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFR 231
           LSL   ++      L + GKG   +         +  + +Y  + P  +N L  ++   +
Sbjct: 287 LSLKVNDLDFGNDVLWVLGKGLSTKEPCRFFKRAQACVHKYLKIKPLTINDLLFEMSYAK 346

Query: 232 G---IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
                R      G+ +   +  RR        T H+LRH+ A  + ++G  +  IQ  L 
Sbjct: 347 AEKEFRASLERMGLSKAVQQAQRR------KVTLHSLRHTCAQLMYAHGNSIEIIQKQLR 400

Query: 289 HFRLSTTQIYT 299
           H  +++T +Y+
Sbjct: 401 HRSIASTMVYS 411


>gi|332521882|ref|ZP_08398330.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
 gi|332042484|gb|EGI78687.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
          Length = 431

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 86/196 (43%), Gaps = 20/196 (10%)

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           +KK+ +  R LNE+Q    + N+ +   H+ + I       ++ ++  GLR  + + L  
Sbjct: 229 VKKNKTTKRYLNEEQFDAFM-NLEVPQEHKAQVI---KDMFIFSVFSGGLRFGDVIELQW 284

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA--ILEYYDLCPFDLNLNIQLPL------- 229
           +N   D    RI     K +    +   +KA  ILE Y       N +I  P        
Sbjct: 285 KNY--DSKNHRITKTIRKTKRQHSIKIGQKAVDILEKYKTKDQKQN-DIIFPFAKVDELY 341

Query: 230 FRGIRGKPL--NPGVF--QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
           F+    + L  N  +     Y+ ++ + L LP + + H  RH+FAT  L+NG  +  +  
Sbjct: 342 FKDREHRSLITNRAISLSNMYLSRIGKELELPFNLSFHISRHTFATRALNNGMRIEHVSK 401

Query: 286 ILGHFRLSTTQIYTNV 301
           ++ H  +  TQ+Y  +
Sbjct: 402 LMDHSDIGITQVYAKI 417


>gi|323709102|gb|ADY02574.1| IntI1 integron integrase [Aeromonas caviae]
          Length = 291

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 64/153 (41%), Gaps = 37/153 (24%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207
           LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R         
Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198

Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                                  +A   +     F  + +   P    +R   +    FQ
Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
           R  ++     G+    T HTLRHSFAT LL +G
Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSG 291


>gi|323693378|ref|ZP_08107593.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
 gi|323502583|gb|EGB18430.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
          Length = 283

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 12/163 (7%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           LLH + E    + R   ++  +   GLR+SE   LT + +   ++ +  +GK   +R V 
Sbjct: 117 LLHAAKEK---NERLYLVMQSICSVGLRVSELKFLTVEAVHRGRTVVNNKGK---MRTVV 170

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           L P +   + +Y   C         + + R   G+PL+       +++L +  G+     
Sbjct: 171 LPPKLCLILKQY---CRRQRVTGGSIFVSRT--GRPLDRSNIWSAMKELAKAAGVAADKV 225

Query: 262 -AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             H LRH FA+       D+  +  ILGH  ++TT+IYT   +
Sbjct: 226 FPHNLRHLFASVYYERFQDIVKLADILGHSNVNTTRIYTTATA 268


>gi|332652986|ref|ZP_08418731.1| putative prophage LambdaCh01, site-specific recombinase, phage
           integrase family [Ruminococcaceae bacterium D16]
 gi|332518132|gb|EGJ47735.1| putative prophage LambdaCh01, site-specific recombinase, phage
           integrase family [Ruminococcaceae bacterium D16]
          Length = 409

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQI 297
           +P    R  R+L    G+      H LRH+FAT  LS+G D++++ S+LGH+    T   
Sbjct: 301 SPDAVSRINRKLLAKAGIEERVRFHDLRHTFATMALSSGVDVKTLSSMLGHYSAGFTLDT 360

Query: 298 YTNV 301
           YT++
Sbjct: 361 YTHI 364


>gi|304384465|ref|ZP_07366866.1| integrase [Prevotella marshii DSM 16973]
 gi|304334444|gb|EFM00736.1| integrase [Prevotella marshii DSM 16973]
          Length = 409

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 82/187 (43%), Gaps = 32/187 (17%)

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DD 184
           P+AL++ +AL  +  +      E   ++      L+  Y  G    + + L+ ++++ DD
Sbjct: 223 PKALDQ-EALNKLKAICFDELEEE--METARDVFLFACYT-GAAYCDLMELSKKHLVRDD 278

Query: 185 QSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGK 236
             +L ++    K  +   + LLP   + I + Y      L PF     I+ P        
Sbjct: 279 AGSLWLKFSRQKTGVLCRIKLLPETVRLIEKMYSDEREALLPF-----IKYP-------- 325

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTT 295
                 +Q  ++ LR   G+    T+HT RH+FAT + L  G  + ++  +LGH  +S T
Sbjct: 326 -----TYQSCLKALRLRAGISFPFTSHTARHTFATLITLEQGVPIETVSKMLGHTNVSMT 380

Query: 296 QIYTNVN 302
           + Y  V 
Sbjct: 381 ERYAKVT 387


>gi|291086747|ref|ZP_06344319.2| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium sp. M62/1]
 gi|291076812|gb|EFE14176.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium sp. M62/1]
          Length = 473

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS-NGGDLRSIQSIL 287
           +F    G P+   V  R + +L    GLP     H+LRHS  T+ L  NGGD++S+Q   
Sbjct: 327 IFCSPMGTPIEGQVINRALNKLIEDNGLP-KVVFHSLRHSSITYKLKLNGGDMKSVQGDS 385

Query: 288 GHFRLS-TTQIYTNV 301
           GH +L     +Y+++
Sbjct: 386 GHAQLKMVADVYSHI 400


>gi|258592916|emb|CBE69225.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
          Length = 124

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 7/57 (12%)

Query: 246 YIRQLRRYLGLPLSTTAHTLRH-SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           YI  ++R++        H  RH +FATH+L  G D+R +Q +LGH  + TT +YT+V
Sbjct: 59  YIGWIKRFIFF------HGKRHPAFATHVLEGGYDIRPVQELLGHSDVKTTMMYTHV 109


>gi|253576683|ref|ZP_04854010.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843893|gb|EES71914.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 360

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 120/327 (36%), Gaps = 65/327 (19%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEI---RAFISKRRTQ 81
           LS  TL  Y  D  QF  +L      A  T  ++T+  +  L    I   R  ++ R   
Sbjct: 34  LSPSTLLEYVRDYEQFFSWLRAEGLTAAQTNAQVTLHDLETLHMESIVGYRLHLTTRTES 93

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM--RNLKKSNSLPRALNEKQALTLVD 139
                ++ R +S ++S   YL +  I  + N   +  RN+     + R    K     + 
Sbjct: 94  TNSKITVSRKMSSLRSLFHYLSQ--IAEDENFYPLLKRNIMAKVEIKRIHKPKDTAAKLK 151

Query: 140 NVLLHTSHETKWI------------------------DARNSAILYLLYGCGLRISEALS 175
             +L     T++I                          R++ I  L+   GLR+SE ++
Sbjct: 152 GKILEEDELTEFIAYIAEGYGRDIADNKQALYAYELNKERDACIASLILNSGLRVSEVVN 211

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-------- 227
           L   ++      + +  KG+            K  + + + C  DL   + L        
Sbjct: 212 LNIDDLDLANKLIYVYRKGNN-------DESFKTPVYFREQCRDDLAAYLTLRQARYRTP 264

Query: 228 ----PLFRGI-----RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT-HLLSNG 277
                LF  I      GK +     Q  I +  +  G P   T H LRHSFAT + L N 
Sbjct: 265 KREKALFVAIPNGQKEGKRMTKRAIQAMIIKYAKRFGKPY-LTVHKLRHSFATDYYLQN- 322

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSK 304
            D+   +  LGH    TT++Y ++  K
Sbjct: 323 -DIYKTKEQLGHASTETTEVYAHLTDK 348


>gi|251791810|ref|YP_003006531.1| integrase family protein [Dickeya zeae Ech1591]
 gi|247540431|gb|ACT09052.1| integrase family protein [Dickeya zeae Ech1591]
          Length = 379

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 68/159 (42%), Gaps = 22/159 (13%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
            L+ C  GLR S+   LT            ++   D  RIV      + + L+Y DL   
Sbjct: 231 FLFSCCTGLRWSDIHKLT---------WAELEPFYDHYRIV--FTQKKTSGLQYLDLNDM 279

Query: 220 DLNL-----NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
            + L          +F+G++    +     R+  Q     G+    T H+ RH+FA   L
Sbjct: 280 AMQLMGRPGKATERIFKGLKYSAWHNMELTRWALQA----GITKKVTFHSARHTFAVIQL 335

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           + G D+ ++  +LGH  L TT+IY ++      D M++ 
Sbjct: 336 NRGVDIYALSRLLGHSELRTTEIYADILESRRRDAMLDF 374


>gi|170696572|ref|ZP_02887694.1| integrase family protein [Burkholderia graminis C4D1M]
 gi|170138525|gb|EDT06731.1| integrase family protein [Burkholderia graminis C4D1M]
          Length = 389

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 71/186 (38%), Gaps = 30/186 (16%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAILEY--Y 214
           ++ LLY  GLR+SEA      +    +    L + GKG     VP+  ++      Y  +
Sbjct: 207 LIRLLYHTGLRVSEAAHAKAADFYQRRGNWWLHVLGKGGAEGEVPVSAALMADFARYRVF 266

Query: 215 DLCPFDLNLNIQLPLFRGIRGKP---LNPGVFQRYIRQLRRYLGLPLSTT---------- 261
              P   + + +      + G P   L P      ++++ R     L+ T          
Sbjct: 267 HGLPPTPSGSERAAAVMSVTGDPQRHLTPAAVYLIVKEMFRRAADMLAPTDPAGAATLRR 326

Query: 262 --AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRHS A+H    G DLR IQ  + H  + TT IY +              DQ H 
Sbjct: 327 ASTHWLRHSAASHQADAGTDLRFIQKNMRHASIQTTGIYLHAED-----------DQRHA 375

Query: 320 SITQKD 325
              ++D
Sbjct: 376 ETVRED 381


>gi|168213143|ref|ZP_02638768.1| site-specific recombinase, phage integrase family [Clostridium
           perfringens CPE str. F4969]
 gi|170715456|gb|EDT27638.1| site-specific recombinase, phage integrase family [Clostridium
           perfringens CPE str. F4969]
          Length = 363

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 115/267 (43%), Gaps = 44/267 (16%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKS 122
           +LS  +I+  I K   +K+   ++KR ++  ++ LK+   +      N+  L +   K  
Sbjct: 112 ELSIIDIQKCIDKLTARKLSPTTVKRRVTAFRTMLKFAHSQYGLPIPNLELLVLPEKKDL 171

Query: 123 NSLPRALNEKQALTLVDNVLL-HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
            S  RA+++ +   L+ ++ + H ++    + A N+         G+R+ E L LT  + 
Sbjct: 172 TSKRRAMDKHEINFLLKHMKMKHYNYYRVCVVAANT---------GMRLGEVLGLT-WDC 221

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-----K 236
           +D ++ +        I +      + K +  + +L     N   ++P+ R         K
Sbjct: 222 VDWENAI--------ITVNKQWKELDKGVFGFGELKS--KNSYRKIPVTRSFLDTLREIK 271

Query: 237 PLNPGVFQ-RYIRQLRRYLGLPLST----------TAHTLRHSFATHLLSNGGDLRSIQS 285
            +N G    R I     YL L ++           + H  RHSFAT L+  G D ++   
Sbjct: 272 SINKGSLDNRVIDNFDNYLSLCVNINKCIRRNYDISMHDFRHSFATRLIHEGLDFKTTAK 331

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMME 312
           ILGH    T ++Y++V      D MME
Sbjct: 332 ILGHDVEQTIRVYSHVT-----DEMME 353


>gi|150006208|ref|YP_001300952.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
           8482]
 gi|149934632|gb|ABR41330.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
           8482]
          Length = 483

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 18/151 (11%)

Query: 160 LYLLYG-CGLRISEALSLTPQNI---MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYY 214
           LYL     GL  ++  +LT +NI    DD   + I + K   +  + LL   ++ I +Y 
Sbjct: 321 LYLFCAFTGLSFADMRNLTEENIRTYFDDHEWINISRQKTGVVSNIRLLDIAKRIIDKYR 380

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL- 273
            LC  D  +         + G           IR + +  G+    T H  RH+ AT + 
Sbjct: 381 GLCE-DGRIFPVPHYMTCLHG-----------IRAVAKRCGITKHITWHQSRHTAATTVF 428

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           LSNG  + ++ S+LGH  + TTQIY  +  +
Sbjct: 429 LSNGVPIETVSSMLGHKSIKTTQIYAKITKE 459


>gi|29348395|ref|NP_811898.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29340299|gb|AAO78092.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 195

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 13/148 (8%)

Query: 160 LYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD-L 216
           L +  GC  GLRIS+ LSL  + I+D      I+ K DK+R + L P ++  I E Y+ +
Sbjct: 35  LLIALGCFTGLRISDILSLRWKQILDADEFTVIEKKTDKVRTIRLNPQLQHHIKECYEHI 94

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLS 275
            P  +N     P+    +G           ++++++   L +   + H+LR +F   + +
Sbjct: 95  NPVGIN----APILISQKGTIFTVQRINIILKEVKKKYRLKIKNFSCHSLRKTFGRQVYN 150

Query: 276 NGGD-----LRSIQSILGHFRLSTTQIY 298
              D     L  +  +  H  ++ T+ Y
Sbjct: 151 MNSDNAELALVKLMELFNHSSVAITKRY 178


>gi|319951385|ref|ZP_08025208.1| phage integrase family protein [Dietzia cinnamea P4]
 gi|319434949|gb|EFV90246.1| phage integrase family protein [Dietzia cinnamea P4]
          Length = 256

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 11/96 (11%)

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           L+++ +LP AL+   A  LV ++         W   R+ AI  L+  CGLR  E L L  
Sbjct: 153 LREARTLPVALSAPDAAALVASL-------RTW---RDRAIAGLMLWCGLRSCEVLGLNV 202

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
            ++      + + GKG K R VPL P V  A+++ Y
Sbjct: 203 TDVDIGGRWITVTGKGAKQRRVPLDPDV-GAVIDVY 237


>gi|325125744|gb|ADY85074.1| Hypothetical conserved protein [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 358

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 8/155 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL----LPSVRKAI 210
           R+ A++ L+ G G+R+SE   +  +++   ++TL I  KG +   VP+    LP + K +
Sbjct: 189 RDMAVIALILGTGIRVSECAGVDMKDLNLKEATLDITRKGGQRDSVPVADWTLPYLEKYL 248

Query: 211 LEYYDLCPFDLNLNIQLPLFR-GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
               D        N    L R     + +     ++ + Q     G P+  T H LRH+ 
Sbjct: 249 AIRADRYKAPAT-NKAFFLTRYHQECRRMTTNAIEKMVGQYSAAFGHPI--TPHKLRHTV 305

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           A+ L     D   +   LG    S T +YT+V+ +
Sbjct: 306 ASELYQATKDQVMVAQQLGQKGTSATDLYTHVDQR 340


>gi|229520176|ref|ZP_04409603.1| integrase [Vibrio cholerae TM 11079-80]
 gi|229342770|gb|EEO07761.1| integrase [Vibrio cholerae TM 11079-80]
          Length = 389

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 6/74 (8%)

Query: 229 LFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           +F+G+R     N  + Q  IR      G+    T H  RH+FA + L+ G D+ S+  +L
Sbjct: 300 VFKGLRYDSYSNVALVQWAIRA-----GITKHVTFHAGRHTFAVNQLARGLDIYSLSRLL 354

Query: 288 GHFRLSTTQIYTNV 301
           GH  L TT+IY ++
Sbjct: 355 GHSELRTTEIYADI 368


>gi|223369868|gb|ACM88802.1| integrase [uncultured bacterium]
          Length = 163

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 29/41 (70%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + HTLR SF  HLL NG ++ ++Q +LG   +STT IYT+V
Sbjct: 122 SCHTLRLSFPPHLLKNGYNIPTVQELLGIKDVSTTMIYTHV 162


>gi|313898869|ref|ZP_07832402.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312956333|gb|EFR37968.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 368

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 95/225 (42%), Gaps = 35/225 (15%)

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI-------DARNSAILYLLYGCGLR 169
           +NL + N +    N K+   L + +  +T  E K         D     I   LY  G+R
Sbjct: 144 QNLIERNPVSSIPNFKRPDELKEEMQFYTPDEWKRFVQAFPKDDIMYYTICCTLYYMGMR 203

Query: 170 ISEALSLTPQNIMD-DQSTLRIQG------KGDKIRIVP----------LLPS----VRK 208
             E L+L  ++ +D  + T+R+         G +  + P           +P     + K
Sbjct: 204 RGEVLALNRKDDVDIVKGTIRVNKTVSQYVSGQRYVVTPPKTKNSYRVIKMPEEELQIMK 263

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
             LE+YD CP           F     +P+ P +  +   ++    GLP     H LRHS
Sbjct: 264 KYLEWYDSCP-----GASADGFLFGMDQPIIPKLLNKRFHRVADAAGLP-QIRIHDLRHS 317

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            AT L+++G ++++I   LG+      + Y+++ ++   D M++I
Sbjct: 318 HATLLINHGANIKAIADRLGNTVEEVLKTYSHLFNET-EDAMIQI 361


>gi|262382217|ref|ZP_06075355.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262297394|gb|EEY85324.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 310

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           F R +++L R  G+ +  T++++RHSFA  L      +  I  +LGH  + TTQIY
Sbjct: 227 FNRNLKRLARACGVSIPITSYSIRHSFAMILKEQDVPIEMISELLGHKSIKTTQIY 282


>gi|226223149|ref|YP_002757256.1| bacteriophage integrase [Listeria monocytogenes Clip81459]
 gi|225875611|emb|CAS04314.1| Putative bacteriophage integrase [Listeria monocytogenes serotype
           4b str. CLIP 80459]
          Length = 309

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 13/147 (8%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-KIRIVPLLP-----SVRKAILE 212
            + L+   GLR SEAL+LTP +       + I    D K+      P     S RK  ++
Sbjct: 141 FILLIIKTGLRFSEALALTPSDFDFSTQKISINKTWDYKMVTGSFQPTKNESSNRKIQID 200

Query: 213 YYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +     F   + ++    P+F  ++ +  N  +  R ++ L +   +P + T H+LRH+ 
Sbjct: 201 WQLAMQFSQLIKMKDSDKPIF--VKSRVFNSTINNR-LKVLCQNANIP-TITIHSLRHTH 256

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           A+ LL  G  + S+ + LGH  ++TTQ
Sbjct: 257 ASLLLFAGVSIASVANRLGHSSMTTTQ 283


>gi|226325881|ref|ZP_03801399.1| hypothetical protein COPCOM_03694 [Coprococcus comes ATCC 27758]
 gi|225206005|gb|EEG88359.1| hypothetical protein COPCOM_03694 [Coprococcus comes ATCC 27758]
          Length = 576

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 107/249 (42%), Gaps = 23/249 (9%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           + + +L   +I  ++S      I   +  R ++ + +FL++LK + I         R LK
Sbjct: 312 KKVTELEIQDIEGYVSVLDKSDIKYSTFNRYITHMHTFLQFLKMKNIEV-LKFYPERFLK 370

Query: 121 K--SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC-GLRISEALSLT 177
           K  +    R++ EK    L+  +     H           ++YL+  C G+R SE  ++ 
Sbjct: 371 KGFTEHNERSVPEKTIAHLIKELPAFPEH---------LQLMYLILFCTGIRKSEVCTIK 421

Query: 178 PQNIMD--DQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
                   +++ +RI Q K  + +++P+ PS+   ++  Y+       +     LF+  +
Sbjct: 422 SGAFYSQGNENWMRIYQSKMRREKVIPV-PSLLVGLVNDYEK---KYGIKNGEYLFKNKK 477

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTT---AHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           G   N   F   + +  +  G+        AH  RH+ AT +  NG  ++ ++  LGH  
Sbjct: 478 GGAFNGQTFSNQMIRECKVRGIACGDYIFRAHDYRHNLATSMYGNGVSIQGVRDYLGHSS 537

Query: 292 LSTTQIYTN 300
            + T+ Y +
Sbjct: 538 ENMTKQYID 546


>gi|298531237|ref|ZP_07018637.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508847|gb|EFI32753.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 384

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 10/147 (6%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLC 217
           I+ +L   G R SE L+   +++  ++   RI   K  K R VPL  S     LE     
Sbjct: 232 IISMLILTGARKSEVLNAKWEDLDLERKRWRIPYTKSGKPRTVPLSESA----LEVLRSV 287

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
           P         P    + GKP N  ++  +    R   GL      HTLRHSFA+ L++ G
Sbjct: 288 PKVEGSEYIFP--SPVTGKPFN-SIYNSW-NTARIKSGLE-DVKIHTLRHSFASFLVNAG 342

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSK 304
            +L  +  +LGH ++ TT  Y++++ +
Sbjct: 343 RNLYEVGKLLGHTQMRTTMRYSHLSDE 369


>gi|152988581|ref|YP_001350694.1| integrase [Pseudomonas aeruginosa PA7]
 gi|150963739|gb|ABR85764.1| integrase [Pseudomonas aeruginosa PA7]
          Length = 332

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 30/43 (69%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           H LRH+FA+H +  GGD+ ++Q ILGH  ++ T  Y +++ ++
Sbjct: 269 HILRHTFASHYMMGGGDILALQRILGHSSITMTMRYAHLSPEH 311


>gi|107099659|ref|ZP_01363577.1| hypothetical protein PaerPA_01000677 [Pseudomonas aeruginosa PACS2]
          Length = 289

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 30/43 (69%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           H LRH+FA+H +  GGD+ ++Q ILGH  ++ T  Y +++ ++
Sbjct: 225 HILRHTFASHYMMGGGDILTLQRILGHSSITMTMRYAHLSPEH 267


>gi|291526795|emb|CBK92381.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 353

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 79/210 (37%), Gaps = 61/210 (29%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---------------------QGKGDK- 196
               L G G RI EA+ +   ++   + T+ I                     + K +  
Sbjct: 149 FFVFLLGTGCRIGEAIGIRWDDVDMKKRTININHSLTYYTRYDNSFKCEFRVSEPKTEAG 208

Query: 197 IRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           IR +P++  V + +   Y        C  +++      +F    G P NP    R I+++
Sbjct: 209 IRTIPMMGPVYEVLKSEYQRQQEEGFCVAEVDGMTNF-IFTNRFGNPHNPQAVNRAIKRI 267

Query: 251 ----------------RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
                           R  + LP   + H  RH+FA+    N  +++ IQ ++GH  +ST
Sbjct: 268 VDTHNAEEEVEAKKKKREPIMLP-RFSCHIFRHTFASRFCENETNVKVIQEVMGHADVST 326

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           T               M IY + +P +T++
Sbjct: 327 T---------------MNIYAEANPEVTRE 341


>gi|268609721|ref|ZP_06143448.1| integrase/recombinase, putative [Ruminococcus flavefaciens FD-1]
          Length = 414

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 107/253 (42%), Gaps = 28/253 (11%)

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMR 117
           I +  Q++Y  I  ++ + +   I  R     ++ +K    YL    IT +     L   
Sbjct: 155 ITSFEQITYEHIEKYLLQYKNNSIKTRGCM--VNYLKKLFGYLYGSGITDDDLREYLPKL 212

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
            + +S+ +P     K+ LT + N +       K    RN A+  L    GLR  +  +L 
Sbjct: 213 RIPRSSGIPHTWT-KEELTALLNAIDREDPAGK----RNYAVFLLTIHTGLRAGDIRNLR 267

Query: 178 PQNIMDDQSTLR-IQGKGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFR 231
             NI  +  T+  I GK  +   +P+  +V  +I++Y      +     + +  + P F 
Sbjct: 268 LSNIDWESKTIHLIMGKTTQPIDLPMSDAVGWSIIDYLKNGRPNTKSDHVFVRHRAP-FT 326

Query: 232 GIRGKPLNPGVFQRYI------RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
            IRG         RY+      ++   + G+      H+LR + A ++L++G  L +I  
Sbjct: 327 SIRGTAALDSAINRYLFKAGIAKKPGEHYGM------HSLRSTLARNMLTSGAALATISQ 380

Query: 286 ILGHFRLSTTQIY 298
            LGH    +T+IY
Sbjct: 381 TLGHEDSKSTEIY 393


>gi|225018072|ref|ZP_03707264.1| hypothetical protein CLOSTMETH_02009 [Clostridium methylpentosum
           DSM 5476]
 gi|224949069|gb|EEG30278.1| hypothetical protein CLOSTMETH_02009 [Clostridium methylpentosum
           DSM 5476]
          Length = 462

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +F    GKP++P     +  +  +   LP   + H+LRH+ AT L++NG +L ++   LG
Sbjct: 364 IFTTCTGKPIHPDTLTTWFHKFVQKNDLP-PVSVHSLRHTNATLLIANGVNLTTVAGRLG 422

Query: 289 HFRL-STTQIYTNV 301
           H    +TT++Y + 
Sbjct: 423 HADTGTTTKVYAHA 436


>gi|313112560|ref|ZP_07798223.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
 gi|310625126|gb|EFQ08418.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
          Length = 466

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSIL 287
           LFR   G P+ P V  ++ R  R           H LRHS AT+ LL +GGD +S+Q   
Sbjct: 326 LFRLPDGLPIAPDVLTKWYRMWRAEHSEFEKIVFHGLRHSSATYQLLQSGGDFKSVQGNT 385

Query: 288 GH 289
           GH
Sbjct: 386 GH 387


>gi|260170442|ref|ZP_05756854.1| transposase [Bacteroides sp. D2]
 gi|315918796|ref|ZP_07915036.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313692671|gb|EFS29506.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 409

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 96/229 (41%), Gaps = 26/229 (11%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +G  +++  L+ +K   +   K   +     +N   LK+  + PR L+ ++   + D  L
Sbjct: 180 LGVETVRHYLAILKKICRIAFKEGHSDRHYFVNYPLLKQKVNPPRTLSREEFEKIRD--L 237

Query: 143 LHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNI-MDDQSTLRIQ---GKGDK 196
               H    I  R+      L+ C  G    + + +T  N+  DD   L ++   GK  K
Sbjct: 238 QFEEHRWSHITTRD----MFLFACYTGTAYVDVIFITNDNLSKDDAGDLWLKYQRGKNGK 293

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +  V LLP   + I +Y +               R      +     +  ++ +R+ +G+
Sbjct: 294 LCRVKLLPEAIELIEKYKNPS-------------RETLFPKMEYNALKWNLQSIRQLIGM 340

Query: 257 PLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSK 304
               T H  RHSF++ +   GG  + ++  +LGH  + TTQIY  V  K
Sbjct: 341 TGPLTYHMGRHSFSSLITLEGGVPIETVSKMLGHSDIKTTQIYARVTPK 389


>gi|229545565|ref|ZP_04434290.1| bacteriophage integrase [Enterococcus faecalis TX1322]
 gi|256853373|ref|ZP_05558743.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|307291735|ref|ZP_07571607.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|229309305|gb|EEN75292.1| bacteriophage integrase [Enterococcus faecalis TX1322]
 gi|256711832|gb|EEU26870.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|306497187|gb|EFM66732.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
          Length = 392

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 111/252 (44%), Gaps = 42/252 (16%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNI---------LNMRNLKKS-NSLPRALNEKQALT 136
           SL+  +  +     Y KK+ +  E+ +         L++++LK+S NSL     E + LT
Sbjct: 133 SLQSLVQVLNMVFNYCKKKNLINENPMKFVKMPKYQLSLKDLKESVNSL-----EDKFLT 187

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL------RI 190
            VD +    ++   + +   S + ++L+  G  +SEAL+L PQ+I  +++ +       +
Sbjct: 188 -VDELRAFLNYGIVYEELPMSVLFHVLFYTGCCVSEALALQPQDIDFERNEILFYKQTAV 246

Query: 191 QGKGDKIRI-----------VPLLPSVRKAILEYYD-LCPFDLNLNIQLP-------LFR 231
           +GK    RI           VP+ P V + + E  D L     N N  +        L  
Sbjct: 247 KGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRNSNFVVDETYLFVYLDP 306

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           G RG P        ++++     G+      H  RH+ A+ L++       ++  LGH  
Sbjct: 307 GKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMAS-LVAEYCSWDVLKDRLGHTD 365

Query: 292 LSTTQIYTNVNS 303
            +T++IY ++ S
Sbjct: 366 STTSKIYRHLTS 377


>gi|113473887|ref|YP_718150.1| putative integrase [Sphingomonas sp. KA1]
 gi|112821567|dbj|BAF03438.1| putative integrase [Sphingomonas sp. KA1]
          Length = 515

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 9/118 (7%)

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLN----LNIQLPLFRGIRGKPLNPGVFQ 244
           ++GK  +   +PL   V  AIL Y     P  ++    L    P FR +       G+  
Sbjct: 385 VKGKSRRSERLPLPQDVGDAILAYLSTARPKAIDRHLFLRAHAP-FRSLSSSAEIAGIVA 443

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           R + +     GLP  T +H  RHS AT++L  G  L S+ +IL H    TT IY  V+
Sbjct: 444 RTLER-SGIEGLP--TGSHIFRHSLATNMLRAGAGLESVGTILRHSSPETTAIYAKVD 498


>gi|332878533|ref|ZP_08446254.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332683628|gb|EGJ56504.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 389

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 19/145 (13%)

Query: 162 LLYGC--GLRISEALSLTPQNIM----DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
            ++ C  GL   +  +LT  NI      +   +  + K D    VPLL  V +AIL+ Y+
Sbjct: 250 FIFACFTGLAYIDVRNLTKDNIRTSFDGNPWIMTARQKTDTAVNVPLL-KVPQAILKKYE 308

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
                     +LP   G+    L+      Y++++    G+  + T H  RH+FAT + L
Sbjct: 309 G---------KLP--NGLLLPVLSNQKLNSYLKEIGDLCGISKNITFHLARHTFATTMTL 357

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYT 299
           + G  + ++  +LGH  + TTQIY 
Sbjct: 358 AKGVPIETVSKMLGHTNIQTTQIYA 382


>gi|301309916|ref|ZP_07215855.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300831490|gb|EFK62121.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 311

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 60/142 (42%), Gaps = 16/142 (11%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G+   +   L  +NI D       Q  G  I++   +PS    +L+    C    +L + 
Sbjct: 148 GIAFVDLAHLKWENIRDGILQYHRQKSGSLIQLE--IPSGALRLLDELSACTAKESLYL- 204

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRY----------LGLPLSTTAHTLRHSFATHLLSN 276
            P   G R        ++ Y R L R+           G+ L  T++T+RHSFA+ L   
Sbjct: 205 FPFLSGTRT---GEAAYKEYNRILSRFNHDLKLLARSTGVTLPVTSYTIRHSFASFLKEQ 261

Query: 277 GGDLRSIQSILGHFRLSTTQIY 298
              +  I  +LGH  + TTQIY
Sbjct: 262 DVSIEVISELLGHKSIKTTQIY 283


>gi|260170443|ref|ZP_05756855.1| tyrosine type site-specific recombinase [Bacteroides sp. D2]
 gi|315918797|ref|ZP_07915037.1| integrase [Bacteroides sp. D2]
 gi|313692672|gb|EFS29507.1| integrase [Bacteroides sp. D2]
          Length = 395

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 29/47 (61%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           G+  + + H  RH+F T LLS G  + SI  ++GH  +STTQ+Y  V
Sbjct: 330 GVKGNMSYHQSRHTFGTLLLSEGIPIESISKMMGHTNISTTQVYAKV 376


>gi|238062907|ref|ZP_04607616.1| phage integrase [Micromonospora sp. ATCC 39149]
 gi|237884718|gb|EEP73546.1| phage integrase [Micromonospora sp. ATCC 39149]
          Length = 477

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS- 293
           G+PL+P    R  R+L    GLP     H LRH  AT   S G DL+++Q  LGH  +  
Sbjct: 333 GQPLHPDYLTRRFRRLVTESGLP-PVRLHDLRHGAATLAHSAGADLKTVQEQLGHTSIVL 391

Query: 294 TTQIYTNV 301
           T   YT+V
Sbjct: 392 TADTYTSV 399


>gi|229000956|ref|ZP_04160415.1| Integrase [Bacillus mycoides Rock3-17]
 gi|228758796|gb|EEM07881.1| Integrase [Bacillus mycoides Rock3-17]
          Length = 122

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 11/107 (10%)

Query: 197 IRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           +R VP+    + AI  +     ++    L  NI   LF+         G+ Q   R  R 
Sbjct: 1   MRKVPITNGTKNAIKRWVSVRGEVSTKQLFCNISGELFK-------QRGLHQMIARYGRM 53

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            +   +  + HT RH+ A   L NGGDL S+Q ILGH  ++ T+ Y 
Sbjct: 54  AMIENVRVSPHTFRHTCAKFYLKNGGDLFSLQKILGHTDIAMTRRYV 100


>gi|38638037|ref|NP_943011.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527375|gb|AAP86125.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 201

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 29/52 (55%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           H LRH+FATH ++N      +Q +LGH  L TT +Y     + G   M ++Y
Sbjct: 146 HALRHTFATHAVANDIPTDVLQRLLGHASLQTTSLYVRAERRRGIAAMAKLY 197


>gi|301159218|emb|CBW18733.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|323131006|gb|ADX18436.1| gp27 phage protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 349

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 90/223 (40%), Gaps = 55/223 (24%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE--KQALTLV 138
           +++G+ SL   L GI+ F      ++   E + L +  L +   L RA  +  K+ LT++
Sbjct: 151 RRLGEWSLPNPLDGIRVF------KEAEKEMSWLTLSQLAE---LFRACEQYGKENLTMI 201

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             V L T                     G R  EA  LT   +   + T   + KG K R
Sbjct: 202 VKVCLAT---------------------GARWGEAERLTRPQLSPYKLTF-TKTKGKKNR 239

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR-RYLGLP 257
            VP+   +       YD          +L   +G   KP     +Q + + L+   + L 
Sbjct: 240 TVPIPKWL-------YD----------ELSERQGRMFKP----CYQEFKKMLKLTNIELT 278

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                H LRH+F  H + NGG++  +Q ILGH  +  T  Y +
Sbjct: 279 EGQKTHVLRHTFGAHFMMNGGNILVLQKILGHANIRETMKYAH 321


>gi|227543842|ref|ZP_03973891.1| transposon integrase [Lactobacillus reuteri CF48-3A]
 gi|300909102|ref|ZP_07126565.1| phage integrase family site-specific recombinase [Lactobacillus
           reuteri SD2112]
 gi|227186170|gb|EEI66241.1| transposon integrase [Lactobacillus reuteri CF48-3A]
 gi|300894509|gb|EFK87867.1| phage integrase family site-specific recombinase [Lactobacillus
           reuteri SD2112]
          Length = 410

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 120/291 (41%), Gaps = 62/291 (21%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLK-RSLSGIKSFLKYLKK--------RKITTESNI 113
           IR L  T+IR F +K     +  R LK  SL  I+  +  +          RK  +++ +
Sbjct: 110 IRTLKVTDIRRFYNKL----VDVRGLKVSSLDTIQLIIHQVLDLAVQDDLVRKNVSDNGL 165

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
             ++ ++  +S+PR     +   L  N L +T     W          ++ G GLR+ E 
Sbjct: 166 RELKRMRGIDSIPRKSLTIEQQNLFLNYLQNTDKYKHWY-----PTFAVMLGTGLRVGEL 220

Query: 174 LSLTPQNIMDDQSTLRI--------QGKGDK-------------IRIVPLLPSVRKAI-- 210
             L  ++I    + +++        + K  K              R +P++ +VR+A+  
Sbjct: 221 TGLRWEDIDFKNNLIKVNHTLVFYERSKSSKTGFGINTPKTKAGFRTIPMIKTVREALQK 280

Query: 211 ----LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG----------- 255
               L+   +   D     +  +F    G   N G   + ++++ R              
Sbjct: 281 QQTYLQKEQIRSVDNIDGFRDFIFLNRFGHVQNQGPLNKALKRIIRDCNFAELDKNPSIN 340

Query: 256 ----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
               LP + + H LRH+F T L+ +G +++ IQ++LGH  + TT  IY +V
Sbjct: 341 NDCLLP-NFSCHVLRHTFTTRLVESGMNVKVIQNVLGHSDIQTTLNIYADV 390


>gi|157159819|ref|YP_001457137.1| phage integrase family site specific recombinase [Escherichia coli
           HS]
 gi|157065499|gb|ABV04754.1| site-specific recombinase, phage integrase family [Escherichia coli
           HS]
          Length = 173

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 61/150 (40%), Gaps = 1/150 (0%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILEY 213
           RN  ++ + +  G R SE L L   +I      L I+   +      PLLP     I  +
Sbjct: 12  RNRCLIMMAFIHGFRASELLDLRLSDIDASGKQLNIRRIKNGFSTTHPLLPDEYNLIKLW 71

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                   N      LF   + +P++   F   IR+  +  GL +    H LRH+    L
Sbjct: 72  LKQRKLIENGVEGDWLFLSRKRRPISRQHFFSIIREAGKRAGLAVKAHPHMLRHACGFAL 131

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             NG D R +Q  LGH  +  T  YT  N+
Sbjct: 132 ADNGVDTRLLQDYLGHRNIQHTVRYTASNA 161


>gi|160894953|ref|ZP_02075727.1| hypothetical protein CLOL250_02503 [Clostridium sp. L2-50]
 gi|156863384|gb|EDO56815.1| hypothetical protein CLOL250_02503 [Clostridium sp. L2-50]
          Length = 583

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 53/255 (20%), Positives = 109/255 (42%), Gaps = 27/255 (10%)

Query: 60  IQTIRQLSYTE-----IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
           +Q I +L  T+     I  ++   +   +G ++   ++SGI+ F+K+L+ +    +    
Sbjct: 310 LQEISELEVTKCDASLIDVYLKNLQNGAMGAKTFNTNVSGIQFFMKFLEVKGYIKKVPFY 369

Query: 115 NMRNLKKSNSL--PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL-LYGCGLRIS 171
               L+K   +   R++ E   + ++ N+     H           +++L L+  GLRIS
Sbjct: 370 ASYYLEKQIPVHHDRSVEEDVYMEIIQNLSQFPEH---------LRMMFLHLWCVGLRIS 420

Query: 172 EALSLT--PQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
           E  +L      I +    +++ Q K    + VP+  ++ + +  Y    P +    I   
Sbjct: 421 EVCTLKGDAYYIQNGDCWMKVYQVKMKNYKRVPIPVTLYRLMQVYLKKHPTEKEAYI--- 477

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGL---PLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
            FR  +G   +   F   +++    +G+        +H  RH+ AT+   +G  ++SI+ 
Sbjct: 478 -FRNRKGGAFSKSTFMGQMKKYCSQIGIQNGEYIFKSHDYRHTVATNFYEHGVSIQSIRD 536

Query: 286 ILGHFRLSTTQIYTN 300
            LGH     T  Y +
Sbjct: 537 YLGHMFEEMTMQYID 551


>gi|150008234|ref|YP_001302977.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|255015378|ref|ZP_05287504.1| integrase [Bacteroides sp. 2_1_7]
 gi|256839485|ref|ZP_05544994.1| integrase [Parabacteroides sp. D13]
 gi|298375193|ref|ZP_06985150.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_19]
 gi|301309266|ref|ZP_07215210.1| tyrosine site-specific recombinase [Bacteroides sp. 20_3]
 gi|149936658|gb|ABR43355.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|256738415|gb|EEU51740.1| integrase [Parabacteroides sp. D13]
 gi|298267693|gb|EFI09349.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_19]
 gi|300832948|gb|EFK63574.1| tyrosine site-specific recombinase [Bacteroides sp. 20_3]
          Length = 310

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           F R +++L R  G+ +  T++++RHSFA  L      +  I  +LGH  + TTQIY
Sbjct: 227 FNRNLKRLARACGVSIPITSYSIRHSFAMILKEQDVPIEMISELLGHKSIKTTQIY 282


>gi|116254950|ref|YP_770785.1| putative integrase/recombinase [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115259598|emb|CAK11568.1| putative integrase/recombinase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 261

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 13/142 (9%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQ--STLRIQGKGDKIRIVPLLPSVRKAILE 212
           R+ A+L+L +  GLR+SE +S+    I D Q  +++ I GKG +  ++PL      A+  
Sbjct: 81  RDRAMLHLAFAAGLRVSELVSIRLDQI-DRQTVTSIHIMGKGRREGVLPLWKETTAALTA 139

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST------TAHTLR 266
           +  + P   +      LF    G+ +    F+  + +        L +      T H LR
Sbjct: 140 WLAVRPASGDTE----LFLNAVGRAMTRAGFEYILAKHAATAAQKLPSLADKRVTPHVLR 195

Query: 267 HSFATHLLSNGGDLRSIQSILG 288
           H+ A H L    D R +   LG
Sbjct: 196 HTCAMHTLKATRDARKVSLWLG 217


>gi|94442244|dbj|BAE93621.1| integron integrase [uncultured bacterium]
          Length = 211

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 82/198 (41%), Gaps = 50/198 (25%)

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           N+   K+   LP  L++ +  TL+DN           +   N  I  L+YG G+R  E L
Sbjct: 26  NVVRAKRPKRLPVVLSQAEVCTLLDN-----------MSGINGLIARLIYGTGMRKMECL 74

Query: 175 SLTPQNI-MDDQSTLRIQGKGDKIRI--------VPL---LPSVR----KAILEYYDLCP 218
            L   ++  D +  +   GKG+K R+         PL   L +VR    K + E Y    
Sbjct: 75  RLRVTDVDFDYRQIIVRSGKGNKDRVTLLPECLCTPLREQLENVRQVHGKDLEEGYGEVG 134

Query: 219 FDLNLNIQLP----------LFRGIRGKPLNP--GVFQRY----------IRQLRRYLGL 256
               L+ + P          +F   R + ++P  GV +R+          IRQ      +
Sbjct: 135 LPFALDRKYPNAGREWKWQYVFPSTR-RSVDPLTGVIRRHHWYDTNVSRAIRQSVYNTRI 193

Query: 257 PLSTTAHTLRHSFATHLL 274
                 HTLRHSFATHLL
Sbjct: 194 NKQVGVHTLRHSFATHLL 211


>gi|300777311|ref|ZP_07087169.1| integrase [Chryseobacterium gleum ATCC 35910]
 gi|300502821|gb|EFK33961.1| integrase [Chryseobacterium gleum ATCC 35910]
          Length = 416

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            T HT RH+F T  L+ G  L S+  ++GH  + TTQIY  + S+
Sbjct: 348 VTFHTARHTFGTMFLTEGVPLESLSKMMGHKNILTTQIYAKITSQ 392


>gi|212693707|ref|ZP_03301835.1| hypothetical protein BACDOR_03227 [Bacteroides dorei DSM 17855]
 gi|237707923|ref|ZP_04538404.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|237723463|ref|ZP_04553944.1| tyrosine type site-specific recombinase [Bacteroides sp. D4]
 gi|265758458|ref|ZP_06090985.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
 gi|212663728|gb|EEB24302.1| hypothetical protein BACDOR_03227 [Bacteroides dorei DSM 17855]
 gi|229438167|gb|EEO48244.1| tyrosine type site-specific recombinase [Bacteroides dorei
           5_1_36/D4]
 gi|229458059|gb|EEO63780.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|263233416|gb|EEZ19072.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
          Length = 386

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 51/173 (29%)

Query: 154 ARNSAILY----LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
            RNS + +     L+ C  GLR S+ +SL  +NI      +++ GK     +  +  SV+
Sbjct: 225 GRNSCLEHTLDAFLFCCYTGLRYSDFVSLNEKNI------VKMDGK-----LWLIFDSVK 273

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA----- 262
                            ++LPL     GK L   + Q+Y  +   +  +  +++      
Sbjct: 274 TGA-------------EVKLPLSLLFEGKALT--LLQKYQGKWSSFFSIKNNSSVNKELI 318

Query: 263 --------------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                         H+ RH+ AT L+  G ++ ++Q +LGH  L+TTQIY  V
Sbjct: 319 RIGKLARINKHFSFHSARHTNATLLIYKGANITTVQKLLGHKNLATTQIYGEV 371


>gi|254453108|ref|ZP_05066545.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198267514|gb|EDY91784.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 426

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 4/74 (5%)

Query: 229 LFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           LF G + G+P+     +R+   ++R   LP     H LRH+FA+ L+S G  L  I  +L
Sbjct: 325 LFPGDVPGQPVKE--IRRFWINVQREANLP-DVRIHDLRHTFASLLVSGGASLEMIGRLL 381

Query: 288 GHFRLSTTQIYTNV 301
           GH ++ TTQ Y ++
Sbjct: 382 GHTQMQTTQRYAHL 395


>gi|172064601|ref|YP_001812251.1| integrase family protein [Burkholderia ambifaria MC40-6]
 gi|171998086|gb|ACB69002.1| integrase family protein [Burkholderia ambifaria MC40-6]
          Length = 710

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 73/196 (37%), Gaps = 52/196 (26%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQST--------LRIQGKGDKIRIVPLLPSVRKAI 210
           +L   Y  GLR +E       ++ +  +         LR+ GK  K R VPL+P+V   +
Sbjct: 498 VLGFAYSTGLRRAELCGAFTDDVQERYAGPELGTIRLLRVVGKRAKERFVPLVPAVLTLM 557

Query: 211 LEYYD---------LCPFDLNL------NIQL-------------PL----FRGIRGKPL 238
            +Y +          CP    L      N ++             P+     R  +  P+
Sbjct: 558 GDYLESRGLPRDPLACPAATPLIPALLSNAEIGKIQRAAKASKIDPVPELAARARQTGPI 617

Query: 239 NPGVFQRYIRQLRRYLGLPL------------STTAHTLRHSFATHLLSNGGDLRSIQSI 286
           +P    + I+Q                     + + H LRH+F +H L+NG  L S ++ 
Sbjct: 618 HPVQLYKAIKQFFATATAAALREDSPHARAFSAASPHWLRHTFVSHALANGMSLESARNF 677

Query: 287 LGHFRLSTTQIYTNVN 302
            GH  L TT IY    
Sbjct: 678 AGHDSLDTTSIYATAE 693


>gi|299142946|ref|ZP_07036072.1| integrase [Prevotella oris C735]
 gi|298575562|gb|EFI47442.1| integrase [Prevotella oris C735]
          Length = 422

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 28/163 (17%)

Query: 167 GLRISEALSLTPQNIM---DDQSTLRIQGKGDKIR-IVPLLPSVRKAILEYY------DL 216
           GL   +   L P++I+   D  + +RI+ +   +  I+PLLP +   IL  Y      D 
Sbjct: 257 GLARVDMQRLKPKHIIRNADGTAEIRIKRQKTNVEAIIPLLP-IANQILSLYIKDKKADE 315

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LS 275
             F  NL I+   F  +     N G   R  + L          T H  RH+F+T + LS
Sbjct: 316 LIFP-NLTIRKASFACV-----NIGQICRIEKGL----------TFHMARHTFSTTICLS 359

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           NG  + ++  +LGH  + TTQIY  +      + M  + D+ H
Sbjct: 360 NGISMETLSKMLGHSNIGTTQIYGKITDHKIQEDMTALTDREH 402


>gi|238922505|ref|YP_002936018.1| integrase/recombinase, XerC/CodV family [Eubacterium rectale ATCC
           33656]
 gi|238874177|gb|ACR73884.1| integrase/recombinase, XerC/CodV family [Eubacterium rectale ATCC
           33656]
          Length = 411

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 77/206 (37%), Gaps = 61/206 (29%)

Query: 162 LLYGCGLRISEALSLTPQNI------MDDQSTLRIQGKGDKI----------------RI 199
            L G G RI EA+ +   +I      +D   +L    + D                  R 
Sbjct: 210 FLLGTGCRIGEAIGIRWDDIDLENRIIDINHSLTYYQRADDSYKCEFRVSLPKTEAGNRR 269

Query: 200 VPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL--- 250
           +P++  V   + E Y+       C  +++      +F    G P NP    R I+++   
Sbjct: 270 IPMMQQVYDVLQEEYERQKQEGFCVENVDGMTNF-VFTNRFGMPHNPAAVNRAIKRIVDT 328

Query: 251 -------------RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
                        R  + +P   + H  RH+FA+    N  +++ IQ ++GH  +STT  
Sbjct: 329 HNSEEEVAAKKEKREPVMIP-RFSCHIFRHTFASRFCENETNIKVIQEVMGHADVSTT-- 385

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQ 323
                        M IY + +P +T+
Sbjct: 386 -------------MNIYAEANPDVTK 398


>gi|261368414|ref|ZP_05981297.1| putative integrase [Subdoligranulum variabile DSM 15176]
 gi|282569555|gb|EFB75090.1| putative integrase [Subdoligranulum variabile DSM 15176]
          Length = 248

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 11/142 (7%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +L  L   G+R+SE   +T + +   ++++R +GK   I    LLP+     LE +  C 
Sbjct: 97  VLQTLCATGIRVSELAYITAEAVHRRRASIRCKGKCRDI----LLPAQLCKRLERW--CA 150

Query: 219 FDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSN 276
                +I   P+F    G+PL+     + ++ L +  G+       H LRH FA      
Sbjct: 151 ---RRHIHAGPVFVTRTGRPLDRVTVWKEMKALCKRAGVAREKVFPHNLRHLFARTFYHI 207

Query: 277 GGDLRSIQSILGHFRLSTTQIY 298
             +L  +  +LGH  + TT+IY
Sbjct: 208 EKNLSKLADLLGHSSIETTRIY 229


>gi|16799599|ref|NP_469867.1| hypothetical protein lin0524 [Listeria innocua Clip11262]
 gi|16412964|emb|CAC95756.1| lin0524 [Listeria innocua Clip11262]
          Length = 309

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 13/146 (8%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-KIRIVPLLP-----SVRKAILEY 213
           + L+   GLR SEAL+LTP +    +  + I    D K+      P     S RK  +++
Sbjct: 142 ILLIIKTGLRFSEALALTPSDFDFSKQKIIINKTWDYKMVTGSFQPTKNESSNRKIQIDW 201

Query: 214 YDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
                F   + ++    P+F  ++ +  N  +  R ++ L     +P + T H+LRH+ A
Sbjct: 202 QLAMQFSQLIKMKDPDKPIF--VKSRVFNSTINNR-LKVLCENANIP-TITVHSLRHTHA 257

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQ 296
           + LL  G  + S+ + LGH  ++TTQ
Sbjct: 258 SLLLFAGVSIASVANRLGHSSMTTTQ 283


>gi|134298730|ref|YP_001112226.1| phage integrase domain/SAM domain-containing protein
           [Desulfotomaculum reducens MI-1]
 gi|134051430|gb|ABO49401.1| phage integrase domain protein SAM domain protein [Desulfotomaculum
           reducens MI-1]
          Length = 210

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 43/199 (21%), Positives = 86/199 (43%), Gaps = 14/199 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+N     G S+ T+  Y    ++ + +      ++     I  L   E  AF+ K   
Sbjct: 8   WLKN----EGKSEKTVNEYPAKLQKLINWFEDTEGDRFEPSKITTLHIHEFIAFLDK--V 61

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN--MRNLKKSNSLPRALNEKQALTLV 138
           +K     + + L+ +K+F KY  +  +   +  +   M+   K  + P+ L ++++    
Sbjct: 62  KKYEPAYINKILASLKTFYKYATETGLVIYNPTIKVKMKRTMKQYAAPKWLTKQESAKFF 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGD 195
             +    + + K    R+ AI  L+ G GLR+ E   L   +I  ++    +    GKG 
Sbjct: 122 HAIEQEKNTKRK---NRDMAICRLMAGAGLRVQEVSDLNIADICIEKRRENVTVRGGKGS 178

Query: 196 KIRIVPLLPSVRKAILEYY 214
           K RI PL     +++ +++
Sbjct: 179 KFRIAPLNSDTVESLEDWF 197


>gi|319901506|ref|YP_004161234.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319416537|gb|ADV43648.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 371

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 20/149 (13%)

Query: 163 LYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           L+ C   LRIS+ L+L  ++I+D  +       G K   V ++    KA     D+ P  
Sbjct: 223 LFSCMTSLRISDILALCWEDIVDYSA-------GGKC--VHIITQKNKA----EDIIPIS 269

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRY----IRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
               ++L  +   +   +  G+ + +    +++  R  G+  + T H+ + +FAT   + 
Sbjct: 270 EEA-LELIGYSSEKKGLVFNGLMRSWTQIPMKEWIRSAGITKNITFHSYQRTFATLQAAT 328

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           G D+R+IQSI+ H  ++TTQ Y  V   N
Sbjct: 329 GTDIRTIQSIMAHKSITTTQRYIKVVDAN 357


>gi|309805011|ref|ZP_07699068.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 09V1-c]
 gi|329919942|ref|ZP_08276844.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners SPIN 1401G]
 gi|308165670|gb|EFO67896.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 09V1-c]
 gi|328936829|gb|EGG33265.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners SPIN 1401G]
          Length = 373

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 24/170 (14%)

Query: 165 GCGLRISEALSLTPQNI----------------MDDQSTLRIQGKGDKIRIVPLLPSVRK 208
             GLR  EAL+L   +I                +D++  ++       +R VPL   +++
Sbjct: 206 STGLRKGEALALHWSDIDFNTNQISVTKTLAYGLDNKYIVQTPKSPKSLRTVPLSTHLKE 265

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            +L+Y D    D  +     +F  I G  L      R++  + + L      T H  RH+
Sbjct: 266 ELLKYKDNQKIDTEI-----IFHTIDGNYLRLSKPTRWLDTIYKQLPDLKRITTHGFRHT 320

Query: 269 FATHLLSNGGDLR--SIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYD 315
           FA+ L+ +   ++   +Q+ILGH  +  T  IYT+V +++       I D
Sbjct: 321 FASLLIESNPYIKPSDVQAILGHETVEMTLNIYTHVTNQSKKKVAQSIND 370


>gi|218130593|ref|ZP_03459397.1| hypothetical protein BACEGG_02182 [Bacteroides eggerthii DSM 20697]
 gi|217986937|gb|EEC53268.1| hypothetical protein BACEGG_02182 [Bacteroides eggerthii DSM 20697]
          Length = 409

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 22/151 (14%)

Query: 162 LLYGC--GLRISEALSLTPQNIM-DDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYD 215
            L+ C  G    + +++T  N+  DD   L ++   GK  ++  V LLP     I +Y D
Sbjct: 253 FLFACYAGTSYVDVVAITLDNLSRDDNGALWLKYRRGKNGQLSRVKLLPEAVALIEKYRD 312

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL- 273
                   + +  LF      P+ P    +  +  ++  +G+    + H  RHSF+T + 
Sbjct: 313 --------DTRPTLF------PVIPYQALKWCLTSIKMKVGIKGRLSYHMGRHSFSTLMT 358

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           L NG  + ++  +LGH  + TTQ+Y  V  K
Sbjct: 359 LENGVPIETVSKMLGHADIRTTQVYARVTPK 389


>gi|332826739|gb|EGJ99556.1| hypothetical protein HMPREF9455_04052 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 406

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 10/110 (9%)

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K D +  +P++    KAILE Y   P  +  N+ LP+    +           Y++++  
Sbjct: 289 KTDNMCNIPVIQPA-KAILEKYKEHPECIKKNVLLPVLSNQKTNA--------YLKEIAD 339

Query: 253 YLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             G+    ++H  RH+ AT + L+N   + ++  ILGH     TQ Y  V
Sbjct: 340 LCGITKKMSSHVARHTAATTVFLANNVSIENVAKILGHSSTKMTQHYAKV 389


>gi|325972150|ref|YP_004248341.1| integrase [Spirochaeta sp. Buddy]
 gi|324027388|gb|ADY14147.1| integrase domain protein SAM domain protein [Spirochaeta sp. Buddy]
          Length = 422

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 23/190 (12%)

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR- 189
           E+  LT  +N  L    E +W + R+     +   CGLR  E L L  ++I  D+  +R 
Sbjct: 224 ERGILTDEENTALF---EQEWKEERSYVGNLVASTCGLRSGEVLGLKAEDIGLDRLFIRH 280

Query: 190 ----IQG----KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---- 237
               + G    K  + R VPLLP VR+ +L   +  P+D         +    G+P    
Sbjct: 281 SYSPLDGLKTPKNGEQRQVPLLPEVREKLLSLVEKNPWDDG----FIFYSDKAGQPMDHK 336

Query: 238 -LNPGVFQRYIR-QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            LN G+ +  I+  + +      +   H+ RH +A   +++  D RS+    GH  ++  
Sbjct: 337 FLNDGLMEAMIKIGISKKEKEERNIVFHSWRHRYAAK-MADLVDARSLGLATGHKTMAML 395

Query: 296 QIYTNVNSKN 305
           + Y    ++N
Sbjct: 396 EHYAAHANEN 405


>gi|325912776|ref|ZP_08175155.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners UPII 60-B]
 gi|325477907|gb|EGC81040.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners UPII 60-B]
          Length = 373

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 24/170 (14%)

Query: 165 GCGLRISEALSLTPQNI----------------MDDQSTLRIQGKGDKIRIVPLLPSVRK 208
             GLR  EAL+L   +I                +D++  ++       +R VPL   +++
Sbjct: 206 STGLRKGEALALHWSDIDFNTNQISVTKTLAYGLDNKYIVQTPKSPKSLRTVPLSTHLKE 265

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            +L+Y D    D  +     +F  I G  L      R++  + + L      T H  RH+
Sbjct: 266 ELLKYKDNQKIDTEI-----IFHTIDGNYLRLSKPTRWLDTIYKQLPDLKRITTHGFRHT 320

Query: 269 FATHLLSNGGDLR--SIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYD 315
           FA+ L+ +   ++   +Q+ILGH  +  T  IYT+V +++       I D
Sbjct: 321 FASLLIESNPYIKPSDVQAILGHETVEMTLNIYTHVTNQSKKKVAQSIND 370


>gi|309791407|ref|ZP_07685914.1| integrase family protein [Oscillochloris trichoides DG6]
 gi|308226540|gb|EFO80261.1| integrase family protein [Oscillochloris trichoides DG6]
          Length = 382

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 73/179 (40%), Gaps = 20/179 (11%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR---IQGKGDKIRIVPLLPSVRKAIL 211
           RN+A+++LL+  G RISE L L   ++  D+  L+   I GKG K   + +  +  +A+ 
Sbjct: 198 RNAALVHLLFSSGARISECLGLDVGDVCRDRKILQQATIYGKGRKEGRLFIRRAAERALQ 257

Query: 212 EYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------------ 258
            Y +   +    +     L R   G  L      R +      L   L            
Sbjct: 258 RYLEARNWPPATSALFESLDRRTAGTRLTRTTGWRVVHHAAEVLAAQLTLEGKVDEAALL 317

Query: 259 -STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            +T+ HT RH    HLL+ G  L  +  IL H  +  T+ Y           + E++DQ
Sbjct: 318 RTTSPHTFRHFVGYHLLNEGVALAEVSQILRHHSVEVTRSYYAAYRDVQ---LQEVHDQ 373


>gi|309808625|ref|ZP_07702517.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
 gi|309809486|ref|ZP_07703344.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners SPIN 2503V10-D]
 gi|308168099|gb|EFO70225.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
 gi|308170158|gb|EFO72193.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners SPIN 2503V10-D]
          Length = 373

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 24/170 (14%)

Query: 165 GCGLRISEALSLTPQNI----------------MDDQSTLRIQGKGDKIRIVPLLPSVRK 208
             GLR  EAL+L   +I                +D++  ++       +R VPL   +++
Sbjct: 206 STGLRKGEALALHWSDIDFNTNQISVTKTLAYGLDNKYIVQTPKSPKSLRTVPLSTHLKE 265

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            +L+Y D    D  +     +F  I G  L      R++  + + L      T H  RH+
Sbjct: 266 ELLKYKDNQKIDTEI-----IFHTIDGNYLRLSKPTRWLDTIYKQLPDLKRITTHGFRHT 320

Query: 269 FATHLLSNGGDLR--SIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYD 315
           FA+ L+ +   ++   +Q+ILGH  +  T  IYT+V +++       I D
Sbjct: 321 FASLLIESNPYIKPSDVQAILGHETVEMTLNIYTHVTNQSKKKVAQSIND 370


>gi|309806813|ref|ZP_07700802.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 03V1-b]
 gi|308166787|gb|EFO68977.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 03V1-b]
          Length = 373

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 24/170 (14%)

Query: 165 GCGLRISEALSLTPQNI----------------MDDQSTLRIQGKGDKIRIVPLLPSVRK 208
             GLR  EAL+L   +I                +D++  ++       +R VPL   +++
Sbjct: 206 STGLRKGEALALHWSDIDFNTNQISVTKTLAYGLDNKYIVQTPKSPKSLRTVPLSTHLKE 265

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            +L+Y D    D  +     +F  I G  L      R++  + + L      T H  RH+
Sbjct: 266 ELLKYKDNQKIDTEI-----IFHTIDGNYLRLSKPTRWLDTIYKQLPDLKRITTHGFRHT 320

Query: 269 FATHLLSNGGDLR--SIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYD 315
           FA+ L+ +   ++   +Q+ILGH  +  T  IYT+V +++       I D
Sbjct: 321 FASLLIESNPYIKPSDVQAILGHETVEMTLNIYTHVTNQSKKKVAQSIND 370


>gi|301162746|emb|CBW22293.1| putative bacteriophage integrase [Bacteroides fragilis 638R]
          Length = 410

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           I+ + +Y G+  + T H  RHS+AT + LSN   + ++  +LGH  + TTQIY  + ++
Sbjct: 328 IKVIAKYCGIEKNVTWHQSRHSYATTVCLSNDVPIETLSKMLGHRSIRTTQIYAKITAE 386


>gi|288916875|ref|ZP_06411248.1| integrase family protein [Frankia sp. EUN1f]
 gi|288351760|gb|EFC85964.1| integrase family protein [Frankia sp. EUN1f]
          Length = 476

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 86/208 (41%), Gaps = 37/208 (17%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR--IVPLLPSVRKAILE 212
           RN+A+  ++   GLR  EAL+L    +  D  T+ I  K  + R  I P     R  ++E
Sbjct: 260 RNAALWLVILALGLRKGEALALRWDVVDLDAGTVAIVRKQRRRRSHIDPETGVQRWELVE 319

Query: 213 YYDLCPFDLNLNIQLP-----------------------------LFRGIRGKPLNPGVF 243
             +L        + LP                             +F    G  ++P   
Sbjct: 320 DDELKTAGSRARLALPTMVVTVLREHRRRQEKARAEACEWADPGLVFTSATGNRIDPRNV 379

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV- 301
            R+  ++     +P  T  H LRH+ A+ L S G DL  I+++L H RL+TT  IY ++ 
Sbjct: 380 NRWWDKVCERAEIP-HTRVHDLRHTAASLLFSAGVDLNEIRALLRHTRLATTADIYVDIL 438

Query: 302 --NSKNGGDWMMEIYDQTH-PSITQKDK 326
               ++    M +I  + H PS T  D+
Sbjct: 439 DEVRRSTARSMDDILTRLHRPSTTDSDE 466


>gi|284990058|ref|YP_003408612.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284063303|gb|ADB74241.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 308

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 88/196 (44%), Gaps = 10/196 (5%)

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           ++ F  ++ + +   +S +  MR      +    L E+Q        LL T     +   
Sbjct: 89  LQQFFGWMVREEEIEKSPMAGMRAPTAPETPVPVLTEEQL-----RQLLATCCGKTFTGR 143

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
           R++A++ L    G R+ E   L  +++ + DQS +R+ GKG +IR+VP      +A+  Y
Sbjct: 144 RDNALIRLFTDTGCRLGELSGLKFEDVDLTDQS-IRVLGKGSRIRVVPFGARTAQAMGRY 202

Query: 214 YDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
             +     + +  +L L    RG     GV    +R+  R +G+  +  AH  RH+ A  
Sbjct: 203 LRVRERSAHASRPELWLAEKDRGVLGYSGVTL-MLRRRGRQIGIA-NLHAHQFRHTAAHR 260

Query: 273 LLSNGGDLRSIQSILG 288
             +NGG    +  ++G
Sbjct: 261 WGANGGSETDLMRLMG 276


>gi|22538129|ref|NP_688980.1| phage integrase family site specific recombinase [Streptococcus
           agalactiae 2603V/R]
 gi|76799350|ref|ZP_00781510.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 18RS21]
 gi|77409127|ref|ZP_00785841.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae COH1]
 gi|22535036|gb|AAN00853.1|AE014281_22 site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 2603V/R]
 gi|76585297|gb|EAO61895.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 18RS21]
 gi|77172255|gb|EAO75410.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae COH1]
 gi|319746116|gb|EFV98390.1| phage integrase family site-specific recombinase [Streptococcus
           agalactiae ATCC 13813]
          Length = 373

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 71/158 (44%), Gaps = 20/158 (12%)

Query: 152 IDARNSAILYLL---YGCGLRISEALSLTPQNIMDDQSTLRIQGK--GDK---------- 196
           +D  NS + YLL   +  GLR+ EAL+LT  ++  +   ++   +  GDK          
Sbjct: 186 LDYSNSIVYYLLLVLFKTGLRVGEALALTWDDVNFEDLEIKTYRRFSGDKGTFSPPKTKT 245

Query: 197 -IRIVPLLPSVRKAILEYYDLCPFDLN----LNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            IR +P+  S+   + +  D     L     +N+   +F   R          + ++ + 
Sbjct: 246 SIRTIPISQSLALILRDLKDDQQVMLKNLKIVNMNNQIFYDYRYGVSTNSAINKSLKNVL 305

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           + L +    TA   RH++ ++LL+ G D+  +  ++GH
Sbjct: 306 KILNINSKMTATGARHTYGSYLLAKGVDIWVVARLMGH 343


>gi|291009850|ref|ZP_06567823.1| phage-related integrase/recombinase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 122

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 36/70 (51%)

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           RG  +      R     R  LGL      H+LR S+AT+L+ +G D   +Q  LGH   S
Sbjct: 28  RGPRIGLARIDRRFATYRDALGLDPGLDFHSLRRSYATYLIEDGYDPLFVQFQLGHEHAS 87

Query: 294 TTQIYTNVNS 303
           TT +YT V+S
Sbjct: 88  TTSLYTCVSS 97


>gi|210610569|ref|ZP_03288495.1| hypothetical protein CLONEX_00685 [Clostridium nexile DSM 1787]
 gi|210152428|gb|EEA83434.1| hypothetical protein CLONEX_00685 [Clostridium nexile DSM 1787]
          Length = 411

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 77/206 (37%), Gaps = 61/206 (29%)

Query: 162 LLYGCGLRISEALSLTPQNI------MDDQSTLRIQGKGDKI----------------RI 199
            L G G RI EA+ +   +I      +D   +L    + D                  R 
Sbjct: 210 FLLGTGCRIGEAIGIRWDDIDLENRIIDINHSLTYYQRADDSYKCEFRVSLPKTEAGNRR 269

Query: 200 VPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL--- 250
           +P++  V   + E Y+       C  +++      +F    G P NP    R I+++   
Sbjct: 270 IPMMQQVYDVLQEEYERQKQEGFCVENVDGMTNF-VFTNRFGMPHNPAAVNRAIKRIVDT 328

Query: 251 -------------RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
                        R  + +P   + H  RH+FA+    N  +++ IQ ++GH  +STT  
Sbjct: 329 HNSEEEVAAKKEKREPVMIP-RFSCHIFRHTFASRFCENETNIKVIQEVMGHADVSTT-- 385

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQ 323
                        M IY + +P +T+
Sbjct: 386 -------------MNIYAEANPDVTK 398


>gi|170750554|ref|YP_001756814.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
 gi|170657076|gb|ACB26131.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
          Length = 396

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 30/166 (18%)

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV-----------RKAILEYY 214
            GLR  E  SLT + +      +R+ GKG K   +P+ P +              +  Y 
Sbjct: 215 TGLRRREVTSLTWRQVDFGAEVIRVIGKGGKGHEIPITPELHLLLWPLRGQHETHVFTYR 274

Query: 215 ----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA----HTLR 266
                LCP      ++  ++      P+    F  ++R+     GL  +  A    H LR
Sbjct: 275 CQRTRLCPTSKRRFVKGQIY------PITYHGFSTHVRR-----GLEKAGVADFRIHDLR 323

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           H+ AT  L    +L+ +Q +L H  LS T+ Y + +  +  D M+E
Sbjct: 324 HTSATRTLRATKNLKIVQKLLNHSSLSVTEKYAHADLDDLRDAMIE 369


>gi|299535740|ref|ZP_07049061.1| phage integrase family site specific recombinase [Lysinibacillus
           fusiformis ZC1]
 gi|298728940|gb|EFI69494.1| phage integrase family site specific recombinase [Lysinibacillus
           fusiformis ZC1]
          Length = 376

 Score = 43.9 bits (102), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 101/246 (41%), Gaps = 63/246 (25%)

Query: 103 KKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
           KKRK T E   L  + NL+  NS+   L+E+    L  ++ LH                 
Sbjct: 155 KKRKPTREELKLQTKENLRLINSI---LDEEHPFYLPFHIGLH----------------- 194

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ----------GKGD----------KIRIVP 201
               CGLR+ E   L  ++I  ++ TL ++          GK              R +P
Sbjct: 195 ----CGLRVGEVCGLEWKHINFEEMTLEVEQQLVGIKDENGKAQWQPRPPKSKAGYRTIP 250

Query: 202 -------LLPSVRKAILE----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
                  +L  ++KA +E    Y +    D   +    + +   G+   P V +   R++
Sbjct: 251 FGNTLAEMLKRIKKAQIENRLKYGEFYQKDPEHDY---VCKKENGEHCTPSVIKYNTRKI 307

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI-YTNVNSKNGGDW 309
              L +  S   H+LRH+ AT L+ NG  ++++Q  LGH R + T+  Y ++  K   D 
Sbjct: 308 SEKLNI--SFNDHSLRHTHATTLIENGTPVKTVQKRLGHSRAAVTEDRYVHLTEKMARD- 364

Query: 310 MMEIYD 315
              I+D
Sbjct: 365 AANIFD 370


>gi|166033606|ref|ZP_02236435.1| hypothetical protein DORFOR_03332 [Dorea formicigenerans ATCC
           27755]
 gi|319936262|ref|ZP_08010680.1| integrase [Coprobacillus sp. 29_1]
 gi|325262570|ref|ZP_08129307.1| transposase [Clostridium sp. D5]
 gi|166026791|gb|EDR45548.1| hypothetical protein DORFOR_03332 [Dorea formicigenerans ATCC
           27755]
 gi|319808638|gb|EFW05182.1| integrase [Coprobacillus sp. 29_1]
 gi|324032402|gb|EGB93680.1| transposase [Clostridium sp. D5]
          Length = 397

 Score = 43.9 bits (102), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 27/207 (13%)

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           N  + K S  L     EK ALT      L +  +T  +  ++   + +L   GLRISE  
Sbjct: 171 NPFDFKLSEVLENDTKEKVALTEEQEQALLSFIKTDNVYHKHYDDVLILLKTGLRISELC 230

Query: 175 SLTPQNI-------MDDQSTLRIQGKG---------DKIRIVPL----LPSVRKAILEYY 214
            LT  +I       + D   L+ + +G           IR VPL    + + ++ + +  
Sbjct: 231 GLTVADIDFKNEVVIIDHQLLKSKEQGYYIETPKTKSGIRQVPLSRETIQAFQRVMKKRP 290

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNP----GVFQRYIRQL-RRYLGLPLS-TTAHTLRHS 268
              PF ++      LF   +GKP        +F R +++  + +   PL   T HTLRH+
Sbjct: 291 KAEPFVIDGQSNF-LFVNHKGKPKVAIDYNALFVRMVKKYNKHHKDNPLPHITPHTLRHT 349

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTT 295
           F T L S   + + +Q I+GH  +S T
Sbjct: 350 FCTRLASKNMNPKDLQYIMGHSNISIT 376


>gi|126661051|ref|ZP_01732135.1| phage integrase [Cyanothece sp. CCY0110]
 gi|126617662|gb|EAZ88447.1| phage integrase [Cyanothece sp. CCY0110]
          Length = 401

 Score = 43.9 bits (102), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           R+  ++   P   +AH+LRH+ AT  L  G  L  +Q +LGH    TT IY ++    G 
Sbjct: 290 REFSQHKPKPRKLSAHSLRHTAATLALRAGATLEQVQDLLGHTDPKTTMIYAHI----GD 345

Query: 308 DWM 310
            W+
Sbjct: 346 RWL 348


>gi|94442236|dbj|BAE93617.1| integron integrase [uncultured bacterium]
          Length = 211

 Score = 43.9 bits (102), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 94/223 (42%), Gaps = 53/223 (23%)

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           ++LS I    K +  +++    N++     K+   LP  L++ +  TL+DN         
Sbjct: 4   QALSAILFLYKNVLNQELEWPDNVVRA---KRPKRLPVVLSQAEVCTLLDN--------- 51

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRI--------V 200
             +   N  I  L+YG G+R  E L L   ++  D   + ++ GKG+K R+         
Sbjct: 52  --MSGINGLIARLIYGTGMRKMECLRLRVTDVDFDYRQIIVRLGKGNKDRVTLLPERLCT 109

Query: 201 PL---LPSVR----KAILEYYDLCPFDLNLNIQLP----------LFRGIRGKPLNP--G 241
           PL   L +VR    K + E Y        L+ + P          +F   R + ++P  G
Sbjct: 110 PLREQLENVRQIHGKDLEEGYGEVGLPFALDRKYPNAGREWKWQYVFPSTR-RSVDPLTG 168

Query: 242 VFQRY----------IRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           V +R+          IRQ      +      HTLRHSFATHLL
Sbjct: 169 VIRRHHWYDTNVSRAIRQSVYNTRINKQVGVHTLRHSFATHLL 211


>gi|265753912|ref|ZP_06089267.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263235626|gb|EEZ21150.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 403

 Score = 43.9 bits (102), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 113/265 (42%), Gaps = 26/265 (9%)

Query: 52  FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS-GIKSFLKYLKK---RKI 107
           F+  +++ + +   ++   +    SK   QK+G  SLK S+  G+K+ L Y  K   R I
Sbjct: 134 FFRLQEMGVYSFESITEDAVLEVFSKDEKQKMG-HSLKYSVEYGLKACLPYYGKSVERII 192

Query: 108 TTESNILNMR-NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
                I NMR N++        L E Q LT + + L H       I  ++ AI+ L    
Sbjct: 193 AYLPAIPNMRKNIQ-------YLTE-QELTAIRHTLEHDGT----ISLQDKAIITLAMYT 240

Query: 167 GLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYY----DLCPFD- 220
           GLR  +  +LT +N   +   ++I Q K  +   +PL   V  A+ +Y       CP   
Sbjct: 241 GLRGCDISALTLENFDWEHDLIKITQAKTGQPLTLPLRAVVGNAVFDYLLKERPQCPEPY 300

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
           + L + +P  R +    L+  +  + + +     G     + H  RH  AT LL  G   
Sbjct: 301 VFLTVHVP-HRRLHTSNLD-AICSKVMCKAGIRQGENERKSMHLFRHHVATSLLQGGVQQ 358

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKN 305
             I + LGH   S+   Y +   K+
Sbjct: 359 PVISATLGHSSPSSLDRYLSAEFKH 383


>gi|257085325|ref|ZP_05579686.1| phage integrase [Enterococcus faecalis Fly1]
 gi|256993355|gb|EEU80657.1| phage integrase [Enterococcus faecalis Fly1]
          Length = 400

 Score = 43.9 bits (102), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 33/173 (19%)

Query: 162 LLYGCGLRISEALSLTPQNI--------MDDQSTLRIQGKGDKI----------RIVPLL 203
           +++  GLR  E ++L   N          D Q   R +  G  I          R + + 
Sbjct: 210 IIFDLGLRKGEVMALRWFNFDFKDDILTFDKQRLYRKEQPGQVILDDVKTDAGKRSLKMT 269

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLP--------LFRGIRGKPLNPGVFQRYI----RQLR 251
             VR ++LE Y +  +DL  N+ LP        LF   RGK +   + QR +     ++ 
Sbjct: 270 NRVRNSVLELYSIN-YDLTSNV-LPMTNSNQDFLFINHRGKNVGLPIRQRSVDTAWHRII 327

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +   LP     H  RH+ A  L   G  L  I+ +LGH  + TT+IY +V+++
Sbjct: 328 QKANLP-KIRIHDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVSAE 379


>gi|258516839|ref|YP_003193061.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257780544|gb|ACV64438.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 381

 Score = 43.9 bits (102), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 3/68 (4%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G+P+NP     Y R++   +GL +S   H LRH+ A+ LL  G   + +Q  LGH  ++ 
Sbjct: 296 GRPINPPSLSSYFRRVASRIGLFVSF--HALRHTHASLLLKAGIQPKIVQERLGHSTIAV 353

Query: 295 T-QIYTNV 301
           T  IY++V
Sbjct: 354 TMDIYSHV 361


>gi|120602532|ref|YP_966932.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
 gi|120562761|gb|ABM28505.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
          Length = 342

 Score = 43.9 bits (102), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 52/249 (20%), Positives = 111/249 (44%), Gaps = 37/249 (14%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSL---KRSLSGIKSFLKYLKKRKITTESNI 113
           ++T   I  + Y ++ AF+ +    + GDR+L   +R L  +K+  ++  +      + +
Sbjct: 98  ELTKAPIDDIRYPDVIAFVDR----QWGDRALATRQRYLGYLKAIFRFAVEHGYAKNNPL 153

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVD--NVLLHTSHETKWIDARNSAILYLLYGCGLRI- 170
              + +++     R       LT+ D   ++ H +   +W        + + +  G R  
Sbjct: 154 AKWKKVREPKRDMR-------LTVEDLGKIMRHAAPHLRWA-------IEVEWELGTRPG 199

Query: 171 -SEALSLTPQNIMDDQSTLRIQGKG--DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
            +E   +   ++   Q  + ++G    +  R++P+LP  R  +         +  ++   
Sbjct: 200 PTELFRIRWDDVDFAQCIVHVRGTKTHEANRVIPILPEFRDRLAATKAAMGGEYVVS--- 256

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
             ++G   K LN  + QR     R  +G P+    + +RH +A+ +L+NG DL ++  IL
Sbjct: 257 --YKGEPVKRLNKAL-QRAAE--RAGIGYPVRM--YDIRHLYASVMLANGSDLAAVSKIL 309

Query: 288 GHFRLSTTQ 296
           GH  ++TTQ
Sbjct: 310 GHSTIATTQ 318


>gi|323351578|ref|ZP_08087232.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis VMC66]
 gi|322122064|gb|EFX93790.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis VMC66]
          Length = 357

 Score = 43.9 bits (102), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 107/285 (37%), Gaps = 59/285 (20%)

Query: 68  YTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL- 125
           Y   R  ++   TQ  +   ++ R+LS + S  KYL +     +      RN+ K  +  
Sbjct: 86  YLRERPLLNANTTQNGVSQTTISRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATK 145

Query: 126 -------PRALNEKQALTLVDNVLLHTSHETKWIDA-------------------RNSAI 159
                   RA N KQ L L D     T    ++ID                    R+ AI
Sbjct: 146 KKKETLAARAENIKQKLFLGD----ETEEFLQYIDTEYPKKLSNRALSSFNKNKERDLAI 201

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           + LL   G+R+SEA++L  ++I      + +  KG K   V +    +  + EY      
Sbjct: 202 IALLLASGVRLSEAVNLDLKDINLKMMVIEVTRKGGKRDSVNVAAFAKPYLEEY------ 255

Query: 220 DLNLNIQLPLFRG-----------IRGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              LNI+   ++             RG P  ++    ++ + +        +  T H LR
Sbjct: 256 ---LNIRSKRYKAEKTDTAFFLTEYRGTPNRIDASSVEKMVAKYSE--DFKVRVTPHKLR 310

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGD 308
           H+ AT L         +   LGH     T +YT++     KN  D
Sbjct: 311 HTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 355


>gi|298674312|ref|YP_003726062.1| integrase family protein [Methanohalobium evestigatum Z-7303]
 gi|298287300|gb|ADI73266.1| integrase family protein [Methanohalobium evestigatum Z-7303]
          Length = 391

 Score = 43.9 bits (102), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 10/127 (7%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDK--IRIVPLLPSVRK 208
           +AR+ AI+Y LY    RISE  ++  +++   +D + + + GK     +R+   +P    
Sbjct: 146 NARDRAIIYTLYESAARISELANMKMRDVKFDEDGALIHLDGKTGPRTVRVAYSVP---- 201

Query: 209 AILEYYDLCPF--DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           A+  + ++ P   D +  + + +    +G+P+    FQR I++  +   +  +   H  R
Sbjct: 202 ALGTWIEMHPNKNDKDAYVWINIGSRSKGQPMKYSSFQRLIKRTAKKANIDKNVHHHLFR 261

Query: 267 HSFATHL 273
           HS AT L
Sbjct: 262 HSRATEL 268


>gi|120537160|ref|YP_957217.1| phage integrase family protein [Marinobacter aquaeolei VT8]
 gi|120553151|ref|YP_957502.1| phage integrase family protein [Marinobacter aquaeolei VT8]
 gi|120323000|gb|ABM17315.1| phage integrase family protein [Marinobacter aquaeolei VT8]
 gi|120326995|gb|ABM21302.1| phage integrase family protein [Marinobacter aquaeolei VT8]
          Length = 459

 Score = 43.9 bits (102), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 123/318 (38%), Gaps = 79/318 (24%)

Query: 53  YTEEKITIQ-TIRQLSYTE---IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT 108
           Y E+K+ I  T++   Y E   + AF  K+R      R+    L   K    Y   RK+ 
Sbjct: 128 YEEKKLQINPTVKPTRYEEWMGLAAFYQKKR------RAFLSHLWANKPAPAYF--RKVM 179

Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET-----KWIDARNSAILYLL 163
             +   +  N  K +  P  +++     L+ N L     ET     + +D +N  I  L+
Sbjct: 180 PRTVSRSNGNEGKKSFPPGRIDD-----LLWNGLTRYGFETSDVVYERLDLKNVLITMLM 234

Query: 164 YGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP-FD 220
           +  GLR+SE   L  ++++  +D + L      DK R  P  PS R+ +L  Y + P F+
Sbjct: 235 HYGGLRLSECFHLWVEDVVPWEDGTALVKIFHPDKGRPRPNGPSRREELLNKYGMQPRFE 294

Query: 221 LNLN-------------------IQLPLFRGIRGKPLN---------------------- 239
            + +                   +Q+  F    G+  N                      
Sbjct: 295 YSKSHTLHAGWKAPKEDNESRHFLQVWWFPRSAGETFNDLWRLYLTYQRYPDGGKHPFAF 354

Query: 240 ------PGVFQRYIRQLRRY---LGLPLS----TTAHTLRHSFATHLLSNGGDLRSIQSI 286
                 P   + Y + L+R    +GLP S    TTAH  RHS+   L     D   I++ 
Sbjct: 355 TTQSGAPHSIKGYNQSLKRAVERIGLPFSKEAGTTAHAHRHSYGQALADANADSLIIKNA 414

Query: 287 LGHFRLSTTQIYTNVNSK 304
           L H  + + Q+YT +  K
Sbjct: 415 LHHKSIESQQVYTELTDK 432


>gi|319937805|ref|ZP_08012208.1| integrase [Coprobacillus sp. 29_1]
 gi|319807240|gb|EFW03854.1| integrase [Coprobacillus sp. 29_1]
          Length = 390

 Score = 43.9 bits (102), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 27/207 (13%)

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           N  + K S  L     EK ALT      L +  +T  +  ++   + +L   GLRISE  
Sbjct: 164 NPFDFKLSEVLENDTKEKVALTEEQEQALLSFIKTDNVYHKHYDDVLILLKTGLRISELC 223

Query: 175 SLTPQNI-------MDDQSTLRIQGKG---------DKIRIVPL----LPSVRKAILEYY 214
            LT  +I       + D   L+ + +G           IR VPL    + + ++ + +  
Sbjct: 224 GLTVADIDFKNEVVIIDHQLLKSKEQGYYIETPKTKSGIRQVPLSRETIQAFQRVMKKRP 283

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNP----GVFQRYIRQL-RRYLGLPLS-TTAHTLRHS 268
              PF ++      LF   +GKP        +F R +++  + +   PL   T HTLRH+
Sbjct: 284 KAEPFVIDGQSNF-LFVNHKGKPKVAIDYNALFVRMVKKYNKHHKDNPLPHITPHTLRHT 342

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTT 295
           F T L S   + + +Q I+GH  +S T
Sbjct: 343 FCTRLASKNMNPKDLQYIMGHSNISIT 369


>gi|167913063|ref|ZP_02500154.1| putative bacteriophage integrase [Burkholderia pseudomallei 112]
          Length = 247

 Score = 43.9 bits (102), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 109/250 (43%), Gaps = 19/250 (7%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE-SNILNMRNLKK 121
           +R+L   +++ ++S R    + + ++KR L  + + + +++      E +N +    L  
Sbjct: 1   MRELKRGDVQRYVSARLADGVCESTVKRELRLLSAAINFVRTEHDYPELANPVQSLGLDG 60

Query: 122 SNSLPRALN--EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
             S  R ++  E  AL L    +    H       RN   L L  GC  R +E L+L   
Sbjct: 61  GESRVRWISRSEATALILAAGAVARQPH------LRNFVRLALSTGC--RKNELLALEWH 112

Query: 180 NIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
            +  ++S  R++    K  K R+VPL      A+ +  D      +      +F    G+
Sbjct: 113 RVDFERSHFRLKCEHTKNGKRRLVPLNSGALLALRDQRDWVA--RHCAGSEWVFASSSGR 170

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            +  G  Q+         G+  +   H LRH+FA+ L+  G  L  ++ +LGH  ++  +
Sbjct: 171 RV--GNLQKGFVAACARAGIE-NFRIHDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAE 227

Query: 297 IYTNVNSKNG 306
            Y +++S +G
Sbjct: 228 RYAHLSSDHG 237


>gi|163815709|ref|ZP_02207081.1| hypothetical protein COPEUT_01890 [Coprococcus eutactus ATCC 27759]
 gi|158449014|gb|EDP26009.1| hypothetical protein COPEUT_01890 [Coprococcus eutactus ATCC 27759]
          Length = 411

 Score = 43.9 bits (102), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 77/206 (37%), Gaps = 61/206 (29%)

Query: 162 LLYGCGLRISEALSLTPQNI------MDDQSTLRIQGKGDKI----------------RI 199
            L G G RI EA+ +   +I      +D   +L    + D                  R 
Sbjct: 210 FLLGTGCRIGEAIGIRWDDIDLENRVIDINHSLTYYQRADDSYKCEFRVSLPKTEAGNRR 269

Query: 200 VPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL--- 250
           +P++  V   + E Y+       C  +++      +F    G P NP    R I+++   
Sbjct: 270 IPMMQQVYDVLQEEYERQKQEGFCVENVDGMTNF-VFTNRFGMPHNPAAVNRAIKRIVDT 328

Query: 251 -------------RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
                        R  + +P   + H  RH+FA+    N  +++ IQ ++GH  +STT  
Sbjct: 329 HNSEEEVAAKKEKREPVMIP-RFSCHIFRHTFASRFCENETNIKVIQEVMGHADVSTT-- 385

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQ 323
                        M IY + +P +T+
Sbjct: 386 -------------MNIYAEANPDVTK 398


>gi|46202173|ref|ZP_00208415.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1]
          Length = 371

 Score = 43.9 bits (102), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 14/148 (9%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            ++ LL   G+R  EAL+L    +  +   L++       + VPL  + R+ +       
Sbjct: 203 GVIRLLALTGMRRGEALALDWGEVDFEYGLLQLADSKTGRKSVPLGAAARQLLAAIPK-- 260

Query: 218 PFDLNLNIQLPLFRGIRGKPLN--PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
           P    L     +FRG  G P+   P +++R    +R+  GL      H LRHS+A    S
Sbjct: 261 PEGGGL-----VFRGPSGGPVGGLPHIWER----IRKRAGLD-GVRLHDLRHSYAAVGAS 310

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            G  L  + +ILGH   +TTQ Y ++ +
Sbjct: 311 GGQSLPILGAILGHSDTATTQRYAHLTA 338


>gi|313897273|ref|ZP_07830817.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312957994|gb|EFR39618.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 397

 Score = 43.9 bits (102), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 91/207 (43%), Gaps = 27/207 (13%)

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           N  + K S  L     EK ALT      L +  +T  +  ++   + +L   GLRISE  
Sbjct: 171 NPFDFKLSEVLENDTKEKVALTEEQEQALLSFIKTDNVYHKHYDDVLILLKTGLRISELC 230

Query: 175 SLTPQNI-------MDDQSTLRIQGKGDKI---------RIVPL----LPSVRKAILEYY 214
            LT  +I       + D   L+ + +G  I         R VPL    + + ++ + +  
Sbjct: 231 GLTVADIDFKNEVVIIDHQLLKSKEQGYYIETPKTKSGTRQVPLSKETIQAFQRVMKKRP 290

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNP----GVFQRYIRQL-RRYLGLPLS-TTAHTLRHS 268
              PF ++      LF   +GKP        +F R +++  + ++  PL   T HTLRH+
Sbjct: 291 KTDPFVIDGRSNF-LFVNHKGKPKVAIDYNALFVRMVKKYNKHHMDNPLPHITPHTLRHT 349

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTT 295
           F T L S   + + +Q I+GH  +S T
Sbjct: 350 FCTRLASKNMNPKDLQYIMGHSNISIT 376


>gi|307566170|ref|ZP_07628625.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345135|gb|EFN90517.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 213

 Score = 43.9 bits (102), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 39/79 (49%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           ++ G    +++ +    G+    T H  RHSF T  L  G  + SI  +LGH  +++T I
Sbjct: 114 MSKGKLSTHLKTVGLACGIRTPLTWHVARHSFGTLTLKAGIPMESIAKMLGHSSIASTHI 173

Query: 298 YTNVNSKNGGDWMMEIYDQ 316
           Y  V  K   ++M  ++ +
Sbjct: 174 YAQVTDKKISEYMDRLFAK 192


>gi|300724633|ref|YP_003713958.1| tyrosine recombinase, regulator of fimA [Xenorhabdus nematophila
           ATCC 19061]
 gi|297631175|emb|CBJ91868.1| tyrosine recombinase, regulator of fimA [Xenorhabdus nematophila
           ATCC 19061]
          Length = 187

 Score = 43.9 bits (102), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 18/159 (11%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEY 213
           R+  +L + +  G R+SE  +L+  ++  + + + I+  KG      PL+P   +A+ ++
Sbjct: 27  RDYCMLLMCFLHGFRVSELCNLSLSDLDLNSAIIHIRRLKGGLSTTHPLIPEEIEALKKW 86

Query: 214 YDL--------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            D+         P+     + L    G   +    G+ +RY ++      + +S   H L
Sbjct: 87  LDVRQEWREADSPW-----VFLSQKSGAVSRQQVYGLLKRYGKKA----SVSVSPHPHML 137

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           RH+    L   G D R IQ  LGH  +S T IYT  N K
Sbjct: 138 RHACGYALADLGRDTRLIQDYLGHRNISHTVIYTASNVK 176


>gi|170690929|ref|ZP_02882095.1| integrase family protein [Burkholderia graminis C4D1M]
 gi|170144178|gb|EDT12340.1| integrase family protein [Burkholderia graminis C4D1M]
          Length = 360

 Score = 43.9 bits (102), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 62/315 (19%), Positives = 136/315 (43%), Gaps = 51/315 (16%)

Query: 16  KERQNWLQNLEIE-------RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++R++W ++ ++        +   + + Q Y+    Q+ +FL +    + ++ T+   + 
Sbjct: 22  QQREDWRRDPQVAFDAWLARQHFRRSSAQVYQA---QWGLFLEWLRARQKSLVTVDTQTI 78

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-----------ESNILNMR 117
            +  A +  R+ Q++      R L  I+  L ++++ + ++           E+   N R
Sbjct: 79  ADFVAGLEIRKPQRV------RYLRLIERVLDHVREVEASSTNPARFIAQDGEAAWRNAR 132

Query: 118 NLKKSNSLPRALNEKQALTL-VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           + + +  L  A  E+ AL   + + +   S   +W + R+ A++ +  G GL+  EA +L
Sbjct: 133 DNEPTGFLHHA--ERAALIAHLFSPVQALSRAQRWKERRDRALIAVFLGGGLKTGEAAAL 190

Query: 177 T--------PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
           T        P   +D  + + ++    + R+ P   ++  A L    L    + L   L 
Sbjct: 191 TVSCATPGSPWITIDSANPMLVR----RTRLAPFASAILDAWLAERRL----VGLAGDLV 242

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA----HTLRHSFATHLLSNGGDLRSIQ 284
                 G+P++     R +  L    G+  S T+    HTLR++FA  L  +G +   + 
Sbjct: 243 FTASPSGRPMHKATMLRAVDALVDAAGIAASRTSRASPHTLRNTFAADLFESGVEAELVG 302

Query: 285 SILGHFR-LSTTQIY 298
             LG  + +S  ++Y
Sbjct: 303 QWLGFVQAVSANRLY 317


>gi|158318043|ref|YP_001510551.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158113448|gb|ABW15645.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 416

 Score = 43.9 bits (102), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 121/306 (39%), Gaps = 59/306 (19%)

Query: 45  QFLIFLAFYTEEKI--------TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR------ 90
           +F  FL ++ +E +        T    R +    IR  +  RR  ++    L+R      
Sbjct: 91  RFADFLTYWLDEIVDPSERAESTKSNYRVMVNNHIRPALGSRRLVELKHEDLQRFLNRKA 150

Query: 91  -------SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ---ALTLVDN 140
                  ++  ++S L+      + TE      RN+ ++  +P+A   K+   AL+  D 
Sbjct: 151 ADGYSTSTMRTLRSVLRQALNEAVITEKI---SRNVAETLRVPKARKPKRNVAALSRDDG 207

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI--- 197
           + L    ++     R+ A+  LL   GLR  EAL+L   +  +   TLR+  +  ++   
Sbjct: 208 LRLLAEAKS----TRHYALYVLLAMVGLRRGEALALRWSDFDESAGTLRVVRQVTRVSGV 263

Query: 198 ---------------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
                                R V +L + R A   +          N  +  F    G 
Sbjct: 264 KGLVVGPTKSQAGTRTLTLPTRCVRVLQAHRTAQHAHRQAAGKRWKENGLI--FPSTVGT 321

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT- 295
            + P     ++ +L +  GLP     H LRH+ AT   + G D + IQ +LGH  LSTT 
Sbjct: 322 HMEPRGLNTHLSKLCQRAGLP-HLGPHALRHTAATMAYALGVDWKQIQQMLGHTMLSTTM 380

Query: 296 QIYTNV 301
            IY ++
Sbjct: 381 DIYVDL 386


>gi|84517237|ref|ZP_01004592.1| Phage integrase [Loktanella vestfoldensis SKA53]
 gi|84508912|gb|EAQ05374.1| Phage integrase [Loktanella vestfoldensis SKA53]
          Length = 401

 Score = 43.9 bits (102), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 7/69 (10%)

Query: 239 NPGVFQRYIR------QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           NP   + Y+         R+  GLP     H LRH+FA+ L++NG  +  +Q +LGH ++
Sbjct: 300 NPKTGKAYVHIWYAWNTARKKAGLP-DVRMHDLRHTFASLLINNGRSIYEVQKLLGHTQI 358

Query: 293 STTQIYTNV 301
            TTQ Y ++
Sbjct: 359 KTTQRYAHL 367


>gi|330903465|gb|EGH34037.1| Orf28 [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 154

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 13/119 (10%)

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           AL + QA  L+D      + +T+ +   R+ AIL +L   GLR  E   L   ++ + + 
Sbjct: 25  ALGDHQAKQLLD------APDTETLKGLRDRAILAVLLYHGLRREETAQLKTGDLQERRG 78

Query: 187 T--LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKPLNPGV 242
              LR+ GKG KIR +PL P   + I  Y +    D+       PLFR +RG     G+
Sbjct: 79  IKHLRVHGKGSKIRFLPLHPVAAERIYAYLEQ---DVERAAAPGPLFRSLRGTTTGAGI 134


>gi|317055795|ref|YP_004104262.1| integrase family protein [Ruminococcus albus 7]
 gi|315448064|gb|ADU21628.1| integrase family protein [Ruminococcus albus 7]
          Length = 413

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 42/178 (23%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--------------------GKGDKIR 198
           I Y++   G+R+ E   L  +++  D   + I                          +R
Sbjct: 206 IFYIMLNTGMRVGEITGLRWEDVDLDGEFISINHTLVYYKHKENGCYFNIHTPKTKAGVR 265

Query: 199 IVPLLPSVRKAIL--EYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            +P+L  V++A +  E+Y       C   ++      +F    G   N G   + IR++ 
Sbjct: 266 TIPILNGVKEAFIQEEHYQREAEIECTVTIDGYTNF-VFVNRFGNVHNQGTLNKAIRRIT 324

Query: 252 RYLGLPLST--------------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           R     +                + H+LRH+FAT L  +G +++ IQ +LGH   +TT
Sbjct: 325 RDCNEEIIAKSKGKANVTLLPRFSCHSLRHTFATRLCESGVNIKVIQDVLGHADFNTT 382


>gi|284800799|ref|YP_003412664.1| integrase [Listeria monocytogenes 08-5578]
 gi|284993985|ref|YP_003415753.1| integrase [Listeria monocytogenes 08-5923]
 gi|284056361|gb|ADB67302.1| integrase [Listeria monocytogenes 08-5578]
 gi|284059452|gb|ADB70391.1| integrase [Listeria monocytogenes 08-5923]
          Length = 309

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 13/146 (8%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-KIRIVPLLP-----SVRKAILEY 213
           + L+   GLR SEAL+LTP +    +  + I    D K+      P     S RK  +++
Sbjct: 142 ILLIIKTGLRFSEALALTPSDFDFSKQKIIINKTWDYKMVTGSFQPTKNESSNRKIQIDW 201

Query: 214 YDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
                F   + ++    P+F  ++ +  N  +  R ++ L     +P + T H+LRH+ A
Sbjct: 202 QLAMQFSQLIKMKGPDKPIF--VKSRVFNSTINNR-LKVLCENANIP-TITVHSLRHTHA 257

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQ 296
           + LL  G  + S+ + LGH  ++TTQ
Sbjct: 258 SLLLFAGVSIASVANRLGHSSMTTTQ 283


>gi|285018626|ref|YP_003376337.1| phage-related integrase [Xanthomonas albilineans GPE PC73]
 gi|283473844|emb|CBA16346.1| putative phage-related integrase protein [Xanthomonas albilineans]
          Length = 397

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 34/61 (55%)

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           PLF    G   N   ++  I+   R +GLP +TTA+ LRHS  T L++ G DL ++  I 
Sbjct: 310 PLFMRADGAAWNKDAWKGPIKTAARVVGLPENTTAYALRHSTITDLVTGGLDLLTVAQIS 369

Query: 288 G 288
           G
Sbjct: 370 G 370


>gi|281424827|ref|ZP_06255740.1| integrase [Prevotella oris F0302]
 gi|299142376|ref|ZP_07035508.1| integrase [Prevotella oris C735]
 gi|281401197|gb|EFB32028.1| integrase [Prevotella oris F0302]
 gi|298576098|gb|EFI47972.1| integrase [Prevotella oris C735]
          Length = 409

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 36/189 (19%)

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIM- 182
           P+AL+++    L   VL     E +   AR+      L+ C  G    + + L+ ++++ 
Sbjct: 223 PKALDQEALDKL--KVLRFDELEEEMETARD----VFLFACYTGAAYCDLMELSKKHLVR 276

Query: 183 DDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIR 234
           DD  +L ++    K  +   + LLP   + I + Y      L PF     I+ P      
Sbjct: 277 DDNGSLWLKFNRQKTGVLCRIKLLPEAVRLIEKMYGDEREALLPF-----IKYP------ 325

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLS 293
                   +Q  ++ LR   G+    T HT RH+FAT + L  G  + ++  +LGH  +S
Sbjct: 326 -------TYQSCLKALRLRAGISFPFTTHTARHTFATLITLEQGVPIETVSKMLGHTNVS 378

Query: 294 TTQIYTNVN 302
            T+ Y  V 
Sbjct: 379 MTERYAKVT 387


>gi|269468487|gb|EEZ80148.1| integrase [uncultured SUP05 cluster bacterium]
          Length = 116

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 32/50 (64%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           + H LRH+FA+H + NGGD+ S+Q +L H  L+ T  Y +++  +  D +
Sbjct: 61  STHILRHTFASHFIMNGGDVLSLQKVLNHSTLTMTIKYAHLSPDHLNDVI 110


>gi|265763143|ref|ZP_06091711.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263255751|gb|EEZ27097.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 410

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           I+ + +Y G+  + T H  RHS+AT + LSN   + ++  +LGH  + TTQIY  + ++
Sbjct: 328 IKVIAKYCGIEKNVTWHQSRHSYATTVCLSNDVPIETLSKMLGHRSIRTTQIYAKITAE 386


>gi|225388191|ref|ZP_03757915.1| hypothetical protein CLOSTASPAR_01926 [Clostridium asparagiforme
           DSM 15981]
 gi|225045749|gb|EEG55995.1| hypothetical protein CLOSTASPAR_01926 [Clostridium asparagiforme
           DSM 15981]
          Length = 300

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 78/178 (43%), Gaps = 24/178 (13%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R L++K+ L LV    +  +        R + +L  +   G+R+SE   +T   +   Q+
Sbjct: 107 RELSKKEYLRLVRTAAVQGNE-------RLALLLETICSSGIRVSELPFITVAALHKGQA 159

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            +  +G+   IR V L   + + +L+Y      +  +     +F    GK LN     R 
Sbjct: 160 EVECKGR---IRTVLLTKKLCRILLDYAARRGIESGM-----IFVTRSGKALNRSNIWRE 211

Query: 247 IRQLRRYLGLPLSTT-----AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           ++ L    GL  +        H LRH FA    +   DL  +  ILGH  ++TT+IYT
Sbjct: 212 MKAL----GLKANVDREKIFPHNLRHLFARTYYAMTKDLSKLADILGHKDINTTRIYT 265


>gi|115534300|ref|YP_783837.1| Orf5 [Nostoc sp. PCC 7524]
 gi|21703338|gb|AAM76170.1|AF516141_5 Orf5 [Nostoc sp. PCC 7524]
 gi|349732|gb|AAA17517.1| integrase/resolvase recombinase [Plasmid pDU1]
 gi|29838551|gb|AAO92602.1| integrase/resolvase [Shuttle vector pAM2770]
          Length = 183

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 66/146 (45%), Gaps = 14/146 (9%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLR---IQGKGDKIRIVPLLPSVRKAILEYYDL 216
           + L  GC  R+SEAL+L   +I  +  T R    +GK  K R+V + P +  A++  Y  
Sbjct: 36  ICLFTGC--RVSEALALQTTDIKGETLTFRKSTTKGK-LKTRVVDIQPGL-AALMADYHP 91

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
            P  L      P  RG+  + L      + +R   + +GL    + H+ R +    + S 
Sbjct: 92  KPGTL-----FPGMRGVSDR-LTRYAADKILRDAAKRIGLE-GISTHSFRRTALNQMSSA 144

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVN 302
           G  LR IQ I GH  L T Q Y  V 
Sbjct: 145 GIPLRHIQEISGHNDLGTLQRYLEVT 170


>gi|332361209|gb|EGJ39013.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK1056]
          Length = 356

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 107/285 (37%), Gaps = 59/285 (20%)

Query: 68  YTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL- 125
           Y   R  ++   TQ  +   ++ R+LS + S  KYL +     +      RN+ K  +  
Sbjct: 85  YLRERPLLNANTTQNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATK 144

Query: 126 -------PRALNEKQALTLVDNVLLHTSHETKWIDA-------------------RNSAI 159
                   RA N KQ L L D     T    ++ID                    R+ AI
Sbjct: 145 KKKETLAARAENIKQKLFLGD----ETEEFLQYIDTEYPKKLSNRALSSFNKNKERDLAI 200

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           + LL   G+R+SEA++L  ++I      + +  KG K   V +    +  + EY      
Sbjct: 201 IALLLASGVRLSEAVNLDLKDINLKMMVIEVTRKGGKRDSVNVAAFAKPYLEEY------ 254

Query: 220 DLNLNIQLPLFRG-----------IRGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              LNI+   ++             RG P  ++    ++ + +        +  T H LR
Sbjct: 255 ---LNIRSKRYKAEKTDTAFFLTEYRGTPNRIDASSVEKMVAKYSE--DFKVRVTPHKLR 309

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGD 308
           H+ AT L         +   LGH     T +YT++     KN  D
Sbjct: 310 HTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|325280668|ref|YP_004253210.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
 gi|324312477|gb|ADY33030.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
          Length = 383

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 34/54 (62%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           R +++L + L +  + T +  RHSFAT L  +G D+  I  ++GH  L+TTQIY
Sbjct: 313 RELKELAQELEISDNLTTYVARHSFATILKRSGVDIALISELMGHSDLTTTQIY 366


>gi|325271510|ref|ZP_08138027.1| tyrosine recombinase, phage integrase family protein [Pseudomonas
           sp. TJI-51]
 gi|324103357|gb|EGC00687.1| tyrosine recombinase, phage integrase family protein [Pseudomonas
           sp. TJI-51]
          Length = 313

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 131/322 (40%), Gaps = 57/322 (17%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +NWL+        S  T++ Y      FL ++   +EE         L    + AF+   
Sbjct: 12  ENWLRT-AFASPYSSKTIRVYCAVATGFLRYIDSRSEEAFP----NALDDDCVIAFL--- 63

Query: 79  RTQKIGDRSLKRSL-----SGIKSFLKYLKKRKITTESNILNM-----------RNLKKS 122
           R   +G +   R+      S + +   +L +  + T+S +  +               + 
Sbjct: 64  RAPGVGGKPYSRAYQVLRHSALCALFHWLVETGVVTDSPMERLPRHTGRRPGTPGGGNRP 123

Query: 123 NSLPRAL---NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
             LP  L   +++  L ++D     +SH    +  R+SAI+ L    GLR  E  + T  
Sbjct: 124 KRLPPVLMWRDQRHLLQVID-----SSHGPAKV--RDSAIVSLGLATGLRNEEICNATIS 176

Query: 180 NIMDDQSTLRIQGKGDKIRIV-------PLLP-----SVRKAILEYYDLCPFDLNLNIQL 227
            +      +R+ GKG+K R++        L P       R  +L+ ++    DL      
Sbjct: 177 GLDLHYRRMRVVGKGNKERLIDFSHDDRALDPMRAWLKTRAEVLQQHER-ESDL------ 229

Query: 228 PLFRGIRGKPLNPG-VFQRYIRQLRRY--LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
            LF    G+ L+   V+Q+  R L+     G      AH LRH+ A+ + + G  +  I+
Sbjct: 230 -LFISRAGRRLSGSLVYQQVSRHLQSAGLAGKLKRCGAHVLRHTAASVMFARGVPILQIK 288

Query: 285 SILGHFRLSTTQIYTNVNSKNG 306
             LGH  L+TTQIY ++    G
Sbjct: 289 ENLGHEDLATTQIYAHLLPPEG 310


>gi|163816187|ref|ZP_02207555.1| hypothetical protein COPEUT_02371 [Coprococcus eutactus ATCC 27759]
 gi|158448607|gb|EDP25602.1| hypothetical protein COPEUT_02371 [Coprococcus eutactus ATCC 27759]
          Length = 426

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 97/198 (48%), Gaps = 30/198 (15%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---------------GKGDK-IRIVPL 202
           ++Y+L+  G+RISE   LT ++I  ++ T+ I                 K D   R++P+
Sbjct: 220 VVYILFHTGMRISEFCGLTLKDIDLEKRTVNIDHQLQRTSDMRYIIETTKTDAGTRVLPI 279

Query: 203 LPSVR---KAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQ-RYIRQLRRY---- 253
              V    +AI+E  +    + +++     LF    G PL    +Q R+   + RY    
Sbjct: 280 TEDVAEMFQAIIEDRNAPKVEKSIDGYSGFLFYDDNGIPLVAMHWQHRFNHMIGRYNDIY 339

Query: 254 -LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM- 310
            + +P + T H  RH++ +++  +G + +++Q ++GH  +S T  +YT++   +  + + 
Sbjct: 340 RVQMP-NITPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNVYTHIGFDDAEEELK 398

Query: 311 -MEIYDQTHPSITQKDKK 327
            ME + +    I ++++K
Sbjct: 399 RMEDFRKAQTEIEKENEK 416


>gi|95928516|ref|ZP_01311263.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
 gi|95135306|gb|EAT16958.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
          Length = 397

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 68/165 (41%), Gaps = 34/165 (20%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           +D  ++  ++LL   G+R SE LSL  +++   D    LR    G+   +   L SV   
Sbjct: 226 LDQPSACAIFLLIALGMRKSELLSLRWEDVSLADRHLHLRDTKNGESRYVA--LNSVSHG 283

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-------YIRQLRRYLGLPLSTTA 262
           +L                      + K  NP VF         +++ +RR        + 
Sbjct: 284 LLTKMKQ-----------------KRKASNPWVFPSRTSSESGHLQDVRRTFATVCRESK 326

Query: 263 ------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                 H LR S A+HLL+ G D+  +  ILGH  L +TQIY  V
Sbjct: 327 ITGLRIHDLRRSHASHLLNAGVDISIVGKILGHKSLKSTQIYAKV 371


>gi|322385519|ref|ZP_08059163.1| phage integrase family integrase/recombinase [Streptococcus
           cristatus ATCC 51100]
 gi|321270257|gb|EFX53173.1| phage integrase family integrase/recombinase [Streptococcus
           cristatus ATCC 51100]
          Length = 357

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 107/285 (37%), Gaps = 59/285 (20%)

Query: 68  YTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL- 125
           Y   R  ++   TQ  +   ++ R+LS + S  KYL +     +      RN+ K  +  
Sbjct: 86  YLRERPLLNANTTQNGVSQTAINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATK 145

Query: 126 -------PRALNEKQALTLVDNVLLHTSHETKWIDA-------------------RNSAI 159
                   RA N KQ L L D     T    ++ID                    R+ AI
Sbjct: 146 KKKETLAARAENIKQKLFLGD----ETEEFLQYIDTEYPKKLSNRALSSFNKNKERDLAI 201

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           + LL   G+R+SEA++L  ++I      + +  KG K   V +    +  + EY      
Sbjct: 202 IALLLASGVRLSEAVNLDLKDINLKMMVIEVTRKGGKRDSVNVAAFAKPYLEEY------ 255

Query: 220 DLNLNIQLPLFRG-----------IRGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              LNI+   ++             RG P  ++    ++ + +        +  T H LR
Sbjct: 256 ---LNIRSKRYKAEKTDTAFFLTEYRGTPNRIDASSVEKMVAKYSE--DFKVRVTPHKLR 310

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGD 308
           H+ AT L         +   LGH     T +YT++     KN  D
Sbjct: 311 HTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 355


>gi|309803940|ref|ZP_07698024.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 11V1-d]
 gi|308164035|gb|EFO66298.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 11V1-d]
          Length = 373

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 24/170 (14%)

Query: 165 GCGLRISEALSLTPQNI----------------MDDQSTLRIQGKGDKIRIVPLLPSVRK 208
             GLR  EAL+L   +I                +D++  ++       +R VPL   +++
Sbjct: 206 STGLRKGEALALHWSDIDFNTNQISVTKTLAYGLDNKYIVQTPKSPKSLRTVPLSTHLKE 265

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            +L+Y D    D  +     +F  I G  L      R++  + + L      T H  RH+
Sbjct: 266 ELLKYKDNQKIDTEI-----IFHTIDGNYLRLSKPTRWLDTIYKQLPDLKRITTHGFRHT 320

Query: 269 FATHLLSNGGDLR--SIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYD 315
           FA+ L+ +   ++   +Q+ILGH  +  T  IYT+V +++       I D
Sbjct: 321 FASLLIESNPYIKPSDVQAILGHETVEMTLNIYTHVTNQSKKKVAQSIND 370


>gi|294785359|ref|ZP_06750647.1| integrase/recombinase [Fusobacterium sp. 3_1_27]
 gi|294487073|gb|EFG34435.1| integrase/recombinase [Fusobacterium sp. 3_1_27]
          Length = 290

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 117/291 (40%), Gaps = 20/291 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  LE E      T+ S   D   FL +L      K  I T+ +L    IR ++++ 
Sbjct: 12  KDFIYYLEFEENKKNNTVISIRKDLNNFLEYLN-----KKNITTLDKLDELIIREYLTEL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +   + + +  R LS IK F KYL    +  +   + +   K      + LN  +     
Sbjct: 67  KDFDLSNSTYNRRLSSIKKFYKYLINNNLKEKGKEILIEGKKSDEKKIQYLNSDEI---- 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKI 197
             +L     E  +   R+  +  LLY  G+ ++E LSL   N  ++ +    ++ K    
Sbjct: 123 -KILREEMKEESFNVLRDKLMFELLYSSGMTVAELLSLGELNFNLEKREVYLLKNKIS-- 179

Query: 198 RIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           R +    + ++  L++     +    + N NI   +F       L     +R I +    
Sbjct: 180 RTLYFSQTCKEVYLKFLIAKKEKFKEENNTNI---IFVNNSNMRLTDRSVRRLINKYSEK 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             L    + +TLRHSF  ++L NG     +  +L    +    +Y N+  K
Sbjct: 237 ANLQKEVSPYTLRHSFCIYMLKNGMPKEYLAKLLDLKSIGLLDVYENLCKK 287


>gi|281334679|gb|ADA61763.1| Tn554-related, transposase A [Staphylococcus epidermidis]
          Length = 370

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 91/212 (42%), Gaps = 26/212 (12%)

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
           KSF+ ++ K    T  NIL ++  KK   +      K+ L   +N+             R
Sbjct: 156 KSFMHHVNK-DYRTLKNILKVKEPKKKIEVLTNAEVKKLLGETNNI-------------R 201

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDD-----QSTL--RIQGKGDKIRIVPLLPSVRK 208
           +  ++ LLY  GLRI E LSL   +I  D     Q  L  R+   G  ++       + +
Sbjct: 202 DKFLIQLLYETGLRIGEVLSLRIDDIKFDFRKGHQIVLKNRLNDNGTYLKTGERKIFISQ 261

Query: 209 AILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT- 264
           ++++ YD   +++   + +    LF  I+G+ +   +    I  L + L    S   H  
Sbjct: 262 SLIDLYDDYVYEIIDELSICSDYLFVKIKGRNVGEAMNYSDICSLFKRLKHKTSINVHPH 321

Query: 265 -LRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             RH+ AT   +   D++ +Q  LGH  + TT
Sbjct: 322 LFRHTHATVFYNETKDIKQVQERLGHSNIQTT 353


>gi|239623915|ref|ZP_04666946.1| integrase family protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521946|gb|EEQ61812.1| integrase family protein [Clostridiales bacterium 1_7_47FAA]
          Length = 350

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 115/265 (43%), Gaps = 37/265 (13%)

Query: 58  ITIQTIRQLSYTEIRAFI--------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           IT++ + QLS T+   ++         K++     +R + R +S +KSF  Y   R    
Sbjct: 74  ITLEHLDQLSVTDFEEYMEYLKYRFNDKKQEVMNKERGIMRKISSLKSFYNYFY-RNERI 132

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTL-VDNVLL---HTSHETKWID----------AR 155
           ++N   +  L K       L+EK+ + L +D V L         K  D           R
Sbjct: 133 KNNPAALVQLPK-------LHEKEIIRLDIDEVALLLDEVEQGEKLTDKQKSYHQKTKVR 185

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
           + A+L LL G G+R+SE + L   +I      +RI  KG K   V     V  A+L+Y +
Sbjct: 186 DLALLTLLLGTGIRVSECVGLNIADIDFKNGGIRIYRKGGKEVTVYFGTEVEDALLDYLE 245

Query: 216 ----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
               + P       +  LF  ++ + +     +  +++  R +      T H LR ++ T
Sbjct: 246 ERDRIIP---EKGHEDALFLSLQRRRMAVRSVENLVKKYARIVSPLKPITPHKLRSTYGT 302

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQ 296
           +L    GD+  +  +LGH  ++TT+
Sbjct: 303 NLYRETGDIYLVADVLGHSDVNTTK 327


>gi|197303539|ref|ZP_03168578.1| hypothetical protein RUMLAC_02261 [Ruminococcus lactaris ATCC
           29176]
 gi|197297537|gb|EDY32098.1| hypothetical protein RUMLAC_02261 [Ruminococcus lactaris ATCC
           29176]
          Length = 425

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 88/194 (45%), Gaps = 34/194 (17%)

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           A+ +KQ  T ++  + + +H  K+ D      +Y+L+  G+RISE   LT +++  +  T
Sbjct: 191 AITKKQEKTFLE-FIKNDAHYCKYYDG-----MYILFKTGMRISEFTGLTLKDLDMENRT 244

Query: 188 LRIQGKGDKI---------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
           + I  +  K                R++P+   V +         P  L +   +  + G
Sbjct: 245 INIDHQLQKTGTLVYIDTTKTYAGTRVIPMQDDVYECFQNIIKARP-KLKVEPMIDGYSG 303

Query: 233 I-----RGKPLNPGVFQRYIRQ-LRRY-----LGLPLSTTAHTLRHSFATHLLSNGGDLR 281
                  GKP+    +++Y +  +++Y     + LP   T H  RH++ +++  +G + +
Sbjct: 304 FLCFDKDGKPMVAMHWEKYFQHAVQKYNRIYRIQLP-KITPHVCRHTYCSNMAKSGMNPK 362

Query: 282 SIQSILGHFRLSTT 295
            +Q ++GH  +S T
Sbjct: 363 VLQYLMGHSDISVT 376


>gi|309778455|ref|ZP_07673364.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53]
 gi|308913782|gb|EFP59613.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53]
          Length = 132

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 6/123 (4%)

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K  ++R VP+  ++  A+  Y    P  L  +   PLFR   G  + P     +  +L  
Sbjct: 1   KSSRVRRVPMNETLYAALNVYLATMPKQLKADEHAPLFRTSGGNVMEPRRITYHFHKLLE 60

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNS----KNGG 307
              +      H+LRH+FAT  L  G  ++   ++LGH   + T+ +Y + +     K   
Sbjct: 61  RAEIQ-GIHFHSLRHTFATRALEAGIPMKYCSAMLGHASTAITENLYAHASEDQLKKEIK 119

Query: 308 DWM 310
           +WM
Sbjct: 120 NWM 122


>gi|295698208|ref|YP_003602864.1| putative resolvase [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295060320|gb|ADF65056.1| putative resolvase [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 258

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 86/218 (39%), Gaps = 43/218 (19%)

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
           S I  MR L  S+S      +  A  L   V L  S+     D R       L+  G R 
Sbjct: 21  SRIFAMRQLAISSS------DAPAYMLAPEVALLFSYMH---DLRERCYFETLWNTGARP 71

Query: 171 SEALSLTPQNIMDDQ-------STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
           +EAL+LTPQ+   D         TL+ + +G + R     P VR   L   D   +   +
Sbjct: 72  NEALALTPQDFSFDAVMPFVTLKTLKQRNRG-RGRPEKNAPPVRSVALWDAD---YRARM 127

Query: 224 NIQLPLFRGIRGKPL-NPGVFQRYIRQ--------LRRYLGLPLSTT------------- 261
              +  F GIR   L  PG       Q        + R+L   L+               
Sbjct: 128 QSLITTF-GIRKTDLIWPGRSSSSATQPVSVSADTVSRWLNRALAAAESDGVTFSVSPIV 186

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
             T RHSFA H+L N    + +QS++GH    +T++YT
Sbjct: 187 PKTFRHSFAMHILFNRIHPKVLQSLMGHKSFKSTEVYT 224


>gi|239949848|gb|ACS36646.1| phage-like integrase [Pseudomonas aeruginosa PAO1]
          Length = 333

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 30/43 (69%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           H LRH+FA+H +  GGD+ ++Q ILGH  ++ T  Y +++ ++
Sbjct: 269 HILRHTFASHYMMGGGDILTLQRILGHSSITMTMRYAHLSPEH 311


>gi|251764782|sp|Q38067|INTG_BPPF1 RecName: Full=Putative integrase
 gi|187940170|gb|ACD39300.1| phage integrase family protein [Pseudomonas aeruginosa]
          Length = 333

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 30/43 (69%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           H LRH+FA+H +  GGD+ ++Q ILGH  ++ T  Y +++ ++
Sbjct: 269 HILRHTFASHYMMGGGDILTLQRILGHSSITMTMRYAHLSPEH 311


>gi|158340860|ref|YP_001522028.1| phage integrase [Acaryochloris marina MBIC11017]
 gi|158311101|gb|ABW32714.1| phage integrase [Acaryochloris marina MBIC11017]
          Length = 298

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 27/230 (11%)

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R  + +K+ L +  +++    + I  + +     +    L++ Q +  +    L T ++ 
Sbjct: 67  RHQATLKALLNFAVRQRYIRSNPIAQLEHRSPDKAKGEHLSD-QPIRFLKPEQLTTLYQA 125

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
            + DAR  A++ LL+  G RISE L+L    +  +Q   ++ GKG+K R      +   A
Sbjct: 126 VYNDARLYALVKLLHHSGARISEILALDLAEVDLEQRQFQVVGKGNKTRWCFYSENAAAA 185

Query: 210 I---LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV----------FQRYIRQLRRYLGL 256
           +   +++Y   P         P     R  P +             + + I+   +  G+
Sbjct: 186 LQTYIQHYRYTPS--------PALFTARKTPTSQVTRLSYRTAHHHWHQSIQGYPQLQGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
            L    H LRH+FAT  +   G L  +++++GH  + TT  Y  V S+  
Sbjct: 238 RL----HDLRHTFATERVGLMG-LEELRALMGHQHIQTTLRYQTVTSEQA 282


>gi|326791706|ref|YP_004309527.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326542470|gb|ADZ84329.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 384

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 87/213 (40%), Gaps = 50/213 (23%)

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDAR----NSAILYLLYGCGLRISEALSLTPQN 180
           +P+   E + + +     L T  + ++I+A     N   L L    G+R+ E L+L  +N
Sbjct: 168 IPKTAKEAKEIKI-----LTTQEQLRYIEASKAEPNGLFLRLALYTGMRLGEVLALKWEN 222

Query: 181 IMDDQSTLRIQGKGDKIRI-----------VPLLPSVRKAI---------------LEYY 214
           +  +Q T+ ++    + R+           V   P  +K I               +E  
Sbjct: 223 VDLEQGTITVKESMKRSRVYSDDGNFIVEDVIKEPKTKKGIRLIYIPDILIEELKQIEKE 282

Query: 215 DLCPFDLNLNIQLPLF-RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT----AHTLRHSF 269
           D   FD N +    +  R      +NP          + Y G   +T      H LRH+ 
Sbjct: 283 DGLVFDTNESTVNHMHDRICTAAKINPN---------KVYKGETATTVYGVGIHALRHTL 333

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           AT LL N  +++ +  ILGH  ++TT  IY++V
Sbjct: 334 ATRLLENNVNIKYVSDILGHKNITTTYNIYSHV 366


>gi|261251522|ref|ZP_05944096.1| probable bacteriophage integrase [Vibrio orientalis CIP 102891]
 gi|260938395|gb|EEX94383.1| probable bacteriophage integrase [Vibrio orientalis CIP 102891]
          Length = 347

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 16/144 (11%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +  +    G RISEA +L    I   + T  I  K  K R VP+   +   ++E+     
Sbjct: 202 VCKICLSTGARISEANNLRLPQITKYKITF-IDTKSKKNRTVPITEKLYNELIEFERTGE 260

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
            D        LF+G      + G+   YI   + +  LP     H  RH+FA+  +  GG
Sbjct: 261 KDR-------LFKGC-----HHGI--AYIIN-QTFPDLPEGQNTHVFRHTFASRFMEAGG 305

Query: 279 DLRSIQSILGHFRLSTTQIYTNVN 302
           ++  +Q ILGH  +  T  Y++ +
Sbjct: 306 NILVLQKILGHSDIKMTMRYSHFS 329


>gi|228982824|ref|ZP_04143083.1| hypothetical protein bthur0002_59570 [Bacillus thuringiensis Bt407]
 gi|228777007|gb|EEM25315.1| hypothetical protein bthur0002_59570 [Bacillus thuringiensis Bt407]
          Length = 388

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 92/219 (42%), Gaps = 14/219 (6%)

Query: 90  RSLSGIKSFLKYLKKRK-----ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           R L+ +  F  YL K+K     +T    +      K  N L     E+   T+V++V + 
Sbjct: 116 RKLATLHKFFGYLFKQKRLSKDVTAGIEMKVPTKAKIKNRLSPGDIERFFKTIVEDVHIE 175

Query: 145 TSHET---KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
            S +    K +  R+  ++  +   G+R+SE + L   ++  ++  L +  KG   + +P
Sbjct: 176 NSRKENFHKKVKFRDYIMVLTMAYTGIRVSELVQLDIDDVYIEKQMLVVIRKGGDEQAIP 235

Query: 202 L----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +    L  +   ++E   L   D+       LF  +  K +N    +  + + R   GL 
Sbjct: 236 MPGRILDDLTDYLVERKKLT--DVKKEDAKALFVSLHKKRMNERTVRLMLEKYRVRSGLD 293

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           +  T H  R +F T+  +   D+     +LGH    TT+
Sbjct: 294 IKITPHVFRRTFGTNHYNTYQDMYLTAQVLGHGSAETTR 332


>gi|313897734|ref|ZP_07831275.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312957269|gb|EFR38896.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 397

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 27/207 (13%)

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           N  + K S  L     EK ALT      L +  +T  +  ++   + +L   GLRISE  
Sbjct: 171 NPFDFKLSEVLENDTKEKVALTEEQEQALLSFIKTDNVYHKHYDDVLILLKTGLRISELC 230

Query: 175 SLTPQNI-------MDDQSTLRIQGKG---------DKIRIVPL----LPSVRKAILEYY 214
            LT  +I       + D   L+ + +G           IR VPL    + + ++ + +  
Sbjct: 231 GLTVADIDFKNEVVIIDHQLLKSKEQGYYIETPKTKSGIRQVPLSRETIQAFQRVMKKRP 290

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNP----GVFQRYIRQL-RRYLGLPLS-TTAHTLRHS 268
              PF ++      LF   +GKP        +F R +++  + +   PL   T HTLRH+
Sbjct: 291 KAEPFVIDGQSNF-LFVNHKGKPKVAIDYNALFVRMVKKYNKHHKDNPLPHITPHTLRHT 349

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTT 295
           F T L S   + + +Q I+GH  +S T
Sbjct: 350 FCTRLASKNMNPKDLQYIMGHSNISIT 376


>gi|300820460|ref|ZP_07100612.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 119-7]
 gi|300527245|gb|EFK48314.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 119-7]
          Length = 206

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 64/157 (40%), Gaps = 2/157 (1%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILEY 213
           RN  ++ + +  G R SE L L   +I      L I+   +      PLLP     I  +
Sbjct: 26  RNRCLIMMAFIHGFRASELLDLRLSDIDASGKQLNIRRIKNGFSTTHPLLPDEYNLIKLW 85

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                   N      LF   + +P++   F   IR+  +  GL +    H LRH+    L
Sbjct: 86  LKQRKLIENGVEGDWLFLSRKRRPISRQHFFSIIREAGKRAGLAVKAHPHMLRHACGFAL 145

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVN-SKNGGDW 309
             NG D R +Q  LGH  +  T  YT  N ++  G W
Sbjct: 146 ADNGVDTRLLQDYLGHRNIQHTVRYTASNAARFKGVW 182


>gi|283795778|ref|ZP_06344931.1| putative transposase [Clostridium sp. M62/1]
 gi|291076409|gb|EFE13773.1| putative transposase [Clostridium sp. M62/1]
          Length = 411

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 77/206 (37%), Gaps = 61/206 (29%)

Query: 162 LLYGCGLRISEALSLTPQNI------MDDQSTLRIQGKGDKI----------------RI 199
            L G G RI EA+ +   +I      +D   +L    + D                  R 
Sbjct: 210 FLLGTGCRIGEAIGVRWDDIDLENRIIDINHSLTYYQRADDSYKCEFRVSLPKTEAGNRR 269

Query: 200 VPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL--- 250
           +P++  V   + E Y+       C  +++      +F    G P NP    R I+++   
Sbjct: 270 IPMMQQVYDVLQEEYERQKQEGFCVENVDGMTNF-VFTNRFGMPHNPAAVNRAIKRIVDT 328

Query: 251 -------------RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
                        R  + +P   + H  RH+FA+    N  +++ IQ ++GH  +STT  
Sbjct: 329 HNSEEEVTAKKEKREPVMIP-RFSCHIFRHTFASRFCENETNIKVIQEVMGHADVSTT-- 385

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQ 323
                        M IY + +P +T+
Sbjct: 386 -------------MNIYAEANPDVTK 398


>gi|317504687|ref|ZP_07962651.1| integrase [Prevotella salivae DSM 15606]
 gi|315664191|gb|EFV03894.1| integrase [Prevotella salivae DSM 15606]
          Length = 431

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 71/164 (43%), Gaps = 27/164 (16%)

Query: 158 AILYLLYGC--GLRISEALSLTPQNIMD---DQSTLRIQGKGDKIR-IVPLLPSVRKAIL 211
           A L  ++ C  GL IS+  +L  ++I      Q  +R + +  K+  IVPL P + +AI+
Sbjct: 238 ARLMFVFSCFTGLAISDMENLEYKHIQTAAYGQMYIRKERQKTKVEFIVPLHP-IAEAII 296

Query: 212 -----------EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
                      E   +   D NL       R +    L+          + +  G+    
Sbjct: 297 NHCRSEKRRSEEQQTVKEKDDNLVFHRDCSRSVMDAKLSI---------VGKACGICQRL 347

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + H  RH+F T  LS G  + SI  ++GH  +S+TQ+Y  V  K
Sbjct: 348 SFHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDK 391


>gi|312602397|ref|YP_004022242.1| hypothetical protein RBRH_01890 [Burkholderia rhizoxinica HKI 454]
 gi|312169711|emb|CBW76723.1| Hypothetical protein RBRH_01890 [Burkholderia rhizoxinica HKI 454]
          Length = 182

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 23/136 (16%)

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC---PFDLNLNIQLPL---FRGIRGKP 237
           DQ  L   GKG + R VP  P +   +  Y   C   P    +    PL   FRG R + 
Sbjct: 14  DQWWLDTVGKGQRARRVPASPELIVELTRYRQACGLSPLPRRVE-DTPLVVPFRGGR-RG 71

Query: 238 LNPGVFQRYIRQLRRYLGLPLST---------------TAHTLRHSFATHLLSNGGDLRS 282
           L+       I+++ R     L                 +AH LRH+  +H    G DLR+
Sbjct: 72  LSRSALHDAIKRIFRDAASWLRARGPEFADRADELVRASAHWLRHTAGSHQADAGLDLRT 131

Query: 283 IQSILGHFRLSTTQIY 298
           ++  LGH  L+TT +Y
Sbjct: 132 VRDNLGHMSLTTTSLY 147


>gi|302185959|ref|ZP_07262632.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. syringae 642]
          Length = 354

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 18/198 (9%)

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           +LN+R     +   R L+ ++   L+  V  H++    WI       + +    G+R SE
Sbjct: 157 VLNIRKPSPGDGRDRRLSPEEERLLLAAVNRHSNPMLGWI-------VCIALETGMRSSE 209

Query: 173 ALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYD--LCPFDLNLNIQLPL 229
             SL    +   +  +R+   K D  R VPL     +      D  + P D NL     +
Sbjct: 210 ISSLRRPQVDLAKRVIRLSDTKNDGSRTVPLSKRATEVFKAAMDNPVRPIDCNL-----V 264

Query: 230 FRGIRGK--PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           F G  GK     P  F +    L++ L LP     H LRH   + L+  G   + + +I 
Sbjct: 265 FFGEPGKDGKRRPYTFTKIWGHLKKKLDLP-DFRFHDLRHEAVSRLVEGGLSDQEVSAIS 323

Query: 288 GHFRLSTTQIYTNVNSKN 305
           GH  +   + YT++ +++
Sbjct: 324 GHKSMQMLKRYTHLRAED 341


>gi|291276218|gb|ADD91307.1| transposase B [Bacillus sp. BS-01]
          Length = 639

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 58/268 (21%), Positives = 105/268 (39%), Gaps = 26/268 (9%)

Query: 49  FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI- 107
           F  F  +    IQ I QL+  EI  + +    + +   ++   +S +  F   +++    
Sbjct: 253 FFNFMNKNCEGIQRIHQLTRNEIEQYFNYINLKGLKPSTVTGRISTLDVFFTTIQRYDWK 312

Query: 108 TTESNILNMRN--LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
            T S IL  +    K   +LPR ++E        ++L   + +   ++   + ++ +L  
Sbjct: 313 DTPSKILIFQEDYPKVPKALPRYIDE--------HILEQLNGKLDKLEPYIATMVMVLQE 364

Query: 166 CGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPSVRKAIL--------EY 213
           CG+RISE  +L   +++ D+         Q K  K  I+P+   +   IL        E 
Sbjct: 365 CGMRISELCTLKKGSVITDKEGDCFLKYYQWKMKKEHIIPISKEIAALILVQEQRVADEL 424

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            D C +        PL +      LN   ++  I       G       H  RH+  T +
Sbjct: 425 DDGCVYVFPRKDCSPLKQDTFRVKLNELAYEEKITDSN---GEIFRFHDHAFRHTVGTRM 481

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           ++NG     +Q  LGH     T  Y ++
Sbjct: 482 INNGVPQHIVQKFLGHESPEMTARYAHI 509


>gi|255034348|ref|YP_003084969.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254947104|gb|ACT91804.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 436

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 15/120 (12%)

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           +R +GK     +VP+LP V + I +Y D  P+ +  +  +P+    R        +  Y+
Sbjct: 299 VRKRGKTQVGEMVPILPIVEELIEKYKDH-PYCIAHDKLIPVNSNFR--------YNTYL 349

Query: 248 RQL------RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           ++L      R   G       H  RH FA  +L+NG  L  +  +LGH  + TT  Y  V
Sbjct: 350 KELADICNIRDITGSIRRLDTHDARHFFADMMLNNGVPLEDVSKMLGHKNIRTTMRYCRV 409


>gi|320449554|ref|YP_004201650.1| DNA integration/recombination/inversion protein [Thermus
           scotoductus SA-01]
 gi|320149724|gb|ADW21102.1| DNA integration/recombination/inversion protein [Thermus
           scotoductus SA-01]
          Length = 391

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 106/237 (44%), Gaps = 37/237 (15%)

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLVDNVLLH 144
           R++++ L  +K+  +     ++   +    +R  L++   + RAL  ++ + L++     
Sbjct: 142 RTVRKVLGHLKALFREAVHLELVPRNPAEGVRLRLREEEKVARALEPEEVIRLLEEAERG 201

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-------QGKGD-- 195
            S E        + +L+LL   GLR  EAL+L  +++  D+  +R+        G+G   
Sbjct: 202 RSREM-------ALLLWLLLSTGLRRGEALALQWRDLDLDRGEVRVWRAWTKVDGRGAFT 254

Query: 196 ------KIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                   R+VPL   +   +  Y +     L P ++    +L LF G R  P +P  F 
Sbjct: 255 TPKTSTARRVVPLPRDLLLRLRAYKEEFLAKLAPEEVE---ELFLFGGDR--PFDPDAFN 309

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            Y+R+L    GL      H LRH++AT  LS G  L  +   LGH   ++  I  NV
Sbjct: 310 HYLRRLAERAGLG-RVRVHDLRHTWATLALSRGVPLEVVSERLGH---ASPTITLNV 362


>gi|320333468|ref|YP_004170179.1| integrase family protein [Deinococcus maricopensis DSM 21211]
 gi|319754757|gb|ADV66514.1| integrase family protein [Deinococcus maricopensis DSM 21211]
          Length = 350

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 17/146 (11%)

Query: 159 ILYLLYGCGLRISEALSLTPQN---------------IMDDQSTLRIQGKGDKIRIVPLL 203
           + +L   CGLR  E L L  ++               +++++ T+         R +PL 
Sbjct: 175 LWHLALSCGLRHGELLGLQWRDLSWAHQELSINRTVIVVNNRPTVGSPKTSSSERAIPL- 233

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           P    A L  +   P +   +    LF    G PL     +R  ++L    GLP S   H
Sbjct: 234 PGEVIATLRAWQTNP-ERPHSADGWLFCTASGTPLLQNNVRRSWKRLLGRAGLPNSIRIH 292

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGH 289
            LRH++A+ L+++G D R++  +LGH
Sbjct: 293 DLRHTYASMLIAHGIDPRTVSDLLGH 318


>gi|317967959|ref|ZP_07969349.1| integrase/recombinase [Synechococcus sp. CB0205]
          Length = 319

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 93/230 (40%), Gaps = 23/230 (10%)

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNI--------LNMRNLKKSNSLPRALNEKQALTL 137
           RS  R +S + +  ++  +   +  + +        + +   K +  LP A      L+ 
Sbjct: 96  RSFNRRVSAVSAMYRWASEPSRSAVTGVPRNPIPPRVQLHAPKLAKPLPEA-----DLSA 150

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGD 195
           V   +     E     AR+  ++   Y  G R+SE   L   +I  +D    + + GKG 
Sbjct: 151 VLGRISQAKAEGSKTAARDFVLVRGSYLLGCRVSELARLKWGDIEAVDGGGQVTLLGKGS 210

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R V     +    LE ++      + +   P  R  +  PL+       +R+  R   
Sbjct: 211 KQRTV----RISVETLELFESLGRRESGDWVFPSNR--KDGPLSRQAIAERMRRWGREAE 264

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           + L    H LRH+ ATH +  G D+ ++Q+ LGH   +TT  Y   N  +
Sbjct: 265 VHLHP--HKLRHTHATHAIRRGVDVFTLQATLGHSSSATTSGYVAANPAD 312


>gi|241895460|ref|ZP_04782756.1| integrase [Weissella paramesenteroides ATCC 33313]
 gi|241871434|gb|EER75185.1| integrase [Weissella paramesenteroides ATCC 33313]
          Length = 293

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 66/146 (45%), Gaps = 15/146 (10%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD----KIRIVPL--LPSVRKAILEYYD 215
           L+   GLR SEAL +TP +    + TL +    D    K +  P     S+RK  +++  
Sbjct: 126 LIAKTGLRFSEALGITPNDFDLSRLTLSVNKTWDYKSAKGQFTPTKNTASMRKVPIDWQV 185

Query: 216 LCPF-----DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
              F     DL  N   P+F     K  N     +  R  +R  G+P   + H LRH+ A
Sbjct: 186 AMQFAQLIKDLPKN--QPIFITPGKKFYNETANDKLARYCKR-AGIP-EISVHGLRHTHA 241

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQ 296
           + LL  G  + S+   LGH  ++TTQ
Sbjct: 242 SLLLYAGVSIGSVAQRLGHSNMNTTQ 267


>gi|238920129|ref|YP_002933644.1| integrase family protein [Edwardsiella ictaluri 93-146]
 gi|238869698|gb|ACR69409.1| integrase family protein [Edwardsiella ictaluri 93-146]
          Length = 295

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 29/50 (58%)

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           R  L LP     H LRH+FA+H +  GG++  +Q ILGH  ++ T  Y +
Sbjct: 214 RAGLHLPKGQRTHVLRHTFASHFMMQGGNILVLQQILGHSTITMTMRYAH 263


>gi|227485414|ref|ZP_03915730.1| integrase [Anaerococcus lactolyticus ATCC 51172]
 gi|227236544|gb|EEI86559.1| integrase [Anaerococcus lactolyticus ATCC 51172]
          Length = 380

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 85/199 (42%), Gaps = 43/199 (21%)

Query: 128 ALNEKQALTLVDNVLLHTSHE-TKWIDA-----RNSAILYLLYGCGLRISEALSLTPQN- 180
           ++ EK+A    D +L  T  E  ++I+A      +     LLY CGLR+ E L+LT +  
Sbjct: 166 SMGEKEA----DEMLFWTQDEYERFIEAIKDKPESFYAFELLYWCGLRMGELLALTKEKF 221

Query: 181 ------IMDDQSTLRIQGKG--------DKIR--IVP--LLPSVRKAILEYYDLCPFDLN 222
                 +  D+S  RI GK           IR  ++P  L   +++ I  +Y L P DL 
Sbjct: 222 DFERHTLKIDESLQRIDGKNVITAPKTKKSIRTIVMPEFLTDEIKEYIESFYKLKPKDLI 281

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
            N      +      ++ G  +  ++++R           H LRHS  + L+  G    +
Sbjct: 282 FNFS----KSYLHHEMDRGSKKSQVKRIR----------IHDLRHSHVSLLIELGFSATA 327

Query: 283 IQSILGHFRLSTTQIYTNV 301
           I   +GH  +  T  Y ++
Sbjct: 328 IADRVGHESIDITYRYAHL 346


>gi|186701779|ref|ZP_02971457.1| integrase-recombinase protein [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
 gi|186701055|gb|EDU19337.1| integrase-recombinase protein [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
          Length = 255

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 126/305 (41%), Gaps = 68/305 (22%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +LQ+++ +R LSK T  +YE   R+F +      EE+   Q I QL  +  +        
Sbjct: 5   FLQSIK-KRNLSKNTYLTYESHLRKFRV------EEQSFKQIINQLLNSNYKP------- 50

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                RSLK + + +  + K+ K+ +   +   + +   +KS     +LNE Q    ++ 
Sbjct: 51  -----RSLKLAKTILSQYWKFNKQYQYVQDLQEIKLSKEQKSYKKIFSLNEIQRCLKIN- 104

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                  +TK I      +L+     G+R +E   L   N         I GKG+K R +
Sbjct: 105 -----KEDTKEIKLYKKILLFYA-TTGIRATEIYQLKQNNT----DLFVIGGKGNKNRQI 154

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-- 258
                     +EY               L+  I+ K L P       + LR+YL +    
Sbjct: 155 --------CYIEY---------------LWNEIKNKSL-PST-----KTLRKYLKIFFDN 185

Query: 259 -STTAHTLRHSFATHLLSN------GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            S + HTLR SF T+ L++      G  L+ +Q ++GH  + TT  Y  ++ +   +   
Sbjct: 186 QSVSLHTLRRSFITNFLTSNENYKRGDMLKIVQDLVGHENIQTTLQYVQISKEQVDNVYK 245

Query: 312 EIYDQ 316
           E + +
Sbjct: 246 EFFKE 250


>gi|317507466|ref|ZP_07965194.1| phage integrase [Segniliparus rugosus ATCC BAA-974]
 gi|316254247|gb|EFV13589.1| phage integrase [Segniliparus rugosus ATCC BAA-974]
          Length = 251

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 235 GKPLNPGVFQRYIRQLRR--YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           GKP+ P   +R IR  R    + LP + T   LRH  A++L+++G D++++Q+ L H   
Sbjct: 155 GKPVTPNTLERDIRLARESGAVDLPETFTFQDLRHYNASYLIASGADIKTVQARLRHASA 214

Query: 293 STT 295
            TT
Sbjct: 215 KTT 217


>gi|298250459|ref|ZP_06974263.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297548463|gb|EFH82330.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 382

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 84/382 (21%), Positives = 151/382 (39%), Gaps = 99/382 (25%)

Query: 1   MEGNNLP-EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
           ++GN+ P E VS         ++++L   RG S  T  +Y  D    L F++F  ++++T
Sbjct: 19  LDGNDQPIEAVS--------GFMRHLHA-RGFSPNTQAAYAYD---LLHFMSFLEQQQLT 66

Query: 60  ------IQTIRQLSYTEIRAFISKRRTQKIG----------------DRSLKRSLSGIKS 97
                 I  +  L+Y  +RA  ++++ Q++G                  S+ R L+ + S
Sbjct: 67  YLDFTPIHALDLLAY--LRAVPNRKQVQRLGLVLCTTEASQPATHLSASSINRILAAVSS 124

Query: 98  FLKYL--------KKRKITTESNILNMR----------------------NLKKSNSLPR 127
           F +YL        ++  I    + +  R                       +K  + +PR
Sbjct: 125 FYEYLILSGRLSGRENPIQKTDDPVTARVPTRHQPFMGHASQQRPIRRVVRVKTISRVPR 184

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM----- 182
            ++E+Q   L+ ++           + R+ A++ L+   GLR  E L+L  ++I      
Sbjct: 185 PMSEEQITALLGSLR----------NCRDKAMILLMLQGGLRPGEILNLHLEDIQYGKRR 234

Query: 183 -----DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                 D     ++ K  + R+V L        L  Y +          L    G +GK 
Sbjct: 235 VIVRYRDDHPKGVRTKSRRERVVDLYEPETLLTLSTYVMQERPQEGESSLVFLVGGQGKR 294

Query: 238 -LNPGVFQRYIRQLRRYLGLPLS-----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
            L P  +   ++   R+    LS      T H LRH+ AT +   G    ++Q  LGH  
Sbjct: 295 RLEPLGYHALVKLFERHCER-LSIREPWVTPHALRHTHATRMWEGGMRELALQKRLGHAS 353

Query: 292 LSTTQIYTNVNSKNGGDWMMEI 313
             +T++YT V+     D MM +
Sbjct: 354 PESTRMYTQVS-----DPMMVV 370


>gi|187935463|ref|YP_001885139.1| site-specific recombinase [Clostridium botulinum B str. Eklund 17B]
 gi|187723616|gb|ACD24837.1| site-specific recombinase [Clostridium botulinum B str. Eklund 17B]
          Length = 212

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 93/216 (43%), Gaps = 31/216 (14%)

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLR---- 169
           M+N+K + S P+   +KQ    +  +  +       K    RN  +  L  G G R    
Sbjct: 1   MKNIKSNISPPKRRKKKQPANPIKEIGQVYDIQDYLKSKSYRNYILFILGIGTGYRAGDL 60

Query: 170 -------ISEALSLTPQNIMDDQ--STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
                  + EAL      IM+ +  ++  I+ K  K R V ++ ++RK + EY       
Sbjct: 61  VKLKVRDVKEALDSGYFTIMEGKKLNSKNIREKNRKPRKVVIVKNLRKKLEEYI------ 114

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG-D 279
           +N N    +F   +G  +      + +++   +  +    +AH++R ++A  +  N G D
Sbjct: 115 INKNDYEYMFASRKGGYIQVKRVSQILKEAATFFSIE-KISAHSMRKTYAYRIYQNNGHD 173

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L SI+ +LGH     T++Y  ++         E+YD
Sbjct: 174 LLSIKEMLGHSSTEETKVYLGLDR--------EVYD 201


>gi|296328241|ref|ZP_06870771.1| integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296154641|gb|EFG95428.1| integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 290

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 118/291 (40%), Gaps = 20/291 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N++  LE E      T+ S   D   FL +L      K  + T+ +L    I+ ++++ 
Sbjct: 12  KNFIYYLEFEENKKNNTVISIRKDLNNFLEYLN-----KKNLVTLDKLDELVIKEYLAEL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +   + + +  R LS IK F KYL    +  +   + +  +K        LN  +     
Sbjct: 67  KAIDLSNSTHNRRLSSIKKFYKYLINNNLKEKGKEILIEGIKNDEKKVEYLNPNEI---- 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKI 197
             +L     E  +   R+  +  LLY  G+ ++E LSL   N  ++ +    ++ K  K+
Sbjct: 123 -ELLREEMKEESFNVLRDRLMFELLYSSGMTVAELLSLGELNFNLEKREVYLLKNKISKV 181

Query: 198 RIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
             +    + ++  L++     +    + N NI   +F       L     +R I +    
Sbjct: 182 --LYFSQTCKEVYLKFLIAKKEKFKEEDNPNI---IFINNSNMRLTDRSVRRLINKYSEK 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             L    + +TLRHSF  ++L NG     +  +L    +    IY N+  K
Sbjct: 237 ANLQKEVSPYTLRHSFCLYMLRNGMSKEYLAKLLDLKSIGLLDIYENLCKK 287


>gi|262172770|ref|ZP_06040448.1| integrase [Vibrio mimicus MB-451]
 gi|261893846|gb|EEY39832.1| integrase [Vibrio mimicus MB-451]
          Length = 391

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 29/47 (61%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           G+    T H+ RH+FA   LS G D+ S+  +LGH  L TT+IY ++
Sbjct: 321 GISKHVTFHSGRHTFAVIQLSRGVDIYSVSRLLGHSELKTTEIYADI 367


>gi|332829432|gb|EGK02081.1| hypothetical protein HMPREF9455_01715 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 406

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 14/140 (10%)

Query: 167 GLRISEALSLTPQNIM-DDQSTLRIQGKGDK---IRIVPLLPSVRKAILEYYDLCPFDLN 222
           GL   +   L P++++ D+   L I+   +K   +  VP+L S  K I++ Y   P  L 
Sbjct: 259 GLAFVDVKHLRPEHLLKDNNDALWIRKPREKTGNMCNVPVLSSA-KVIIDRYKDHPLCLK 317

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLR 281
             + LP+   +  + +N      Y++++    G+    T H  RH+ AT + L+N   L 
Sbjct: 318 NGVLLPV---LTNQKMNS-----YLKEIADLCGITKRLTTHVARHTAATVVFLANNVSLE 369

Query: 282 SIQSILGHFRLSTTQIYTNV 301
           ++  ILGH     TQ Y  V
Sbjct: 370 NVSKILGHSSTKMTQHYAKV 389


>gi|288926411|ref|ZP_06420332.1| site-specific recombinase, phage integrase family [Prevotella
           buccae D17]
 gi|288336784|gb|EFC75149.1| site-specific recombinase, phage integrase family [Prevotella
           buccae D17]
          Length = 464

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 28/165 (16%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY--DL 216
             +  Y  G+R+ + + L   NI  +       GK  K R + L+P   + +  YY  D+
Sbjct: 256 FFFSFYCAGIRVGDFVQLRWCNITSEGRLHYQMGKNHKDRDLKLVPEAIEILKHYYRDDV 315

Query: 217 CPFD-----LNL------------------NIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            P +     L+L                  +++L +F  I  K     +  + + ++ + 
Sbjct: 316 KPNEYIFPLLDLKPTWAKYVSQEEKDTMPSDMKLAMFTTISAKT---ALINKELAKIGKL 372

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            G+    + H  RHSFA      G D   ++++L H  +STTQ Y
Sbjct: 373 AGIDKKVSFHISRHSFAKMAKEKGLDNLEVKALLAHTNISTTQKY 417


>gi|253567964|ref|ZP_04845375.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251842037|gb|EES70117.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 266

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 106/248 (42%), Gaps = 23/248 (9%)

Query: 52  FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111
           ++T  K   +   +L+    R FI     +K+   +++  ++ I+ F K++KK     E 
Sbjct: 23  YHTSLKQYFEYANELNMDNCRRFIKSLEEEKLSPATIRLRITAIEKFSKWVKK---PIEL 79

Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
               M+     N++P    E++   L++ +      +TK ++      + +L   G R+S
Sbjct: 80  KRPKMKRKLDVNNVP---TEEEYNRLLEYL------KTK-LNKDYYFFIKVLGTTGARLS 129

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           E    T ++I   +  L+  GKG+K R       +++ + +Y         L +      
Sbjct: 130 EFQQFTWEDIAIGEVVLK--GKGNKYRRFFFQKQLQREVKDYIKETGKSGTLAVG----- 182

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             R  PL      ++++   ++ G+      AH  RH FA   L    D+  +  +LGH 
Sbjct: 183 --RFGPLTQRGLSQHLKVWGKHCGIDSKKMHAHAFRHFFAKMFLKKTKDVIQLADLLGHG 240

Query: 291 RLSTTQIY 298
            + TT+IY
Sbjct: 241 SVDTTRIY 248


>gi|325298292|ref|YP_004258209.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|330995849|ref|ZP_08319745.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|324317845|gb|ADY35736.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|329574380|gb|EGG55951.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 406

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 248 RQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +QL++ +   G+    + H  RH+F T  LS G  + S+  +LGH  + TTQIY  + ++
Sbjct: 325 KQLKKVMAECGIEKQISYHCARHTFGTLALSKGMPIESVSRVLGHTNIVTTQIYAKITTQ 384


>gi|303246077|ref|ZP_07332358.1| integrase family protein [Desulfovibrio fructosovorans JJ]
 gi|302492473|gb|EFL52344.1| integrase family protein [Desulfovibrio fructosovorans JJ]
          Length = 339

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 103/243 (42%), Gaps = 31/243 (12%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           + QLS+ ++    ++   + I  R+  R L  +++ L +   + +TT +    MR  KK+
Sbjct: 104 VDQLSFQDVMLVANRFSLKSIATRN--RYLECLRTILNFGINQGLTTNNP---MRTWKKA 158

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI--SEALSLTPQN 180
               R    K     +  +L       KW        L +L+  G R   SE   +  ++
Sbjct: 159 REPKREF--KLTFDDLQRILDKAQPHLKWA-------LEVLWELGTRPGNSELFRIKWED 209

Query: 181 IMDDQSTLRIQGKGDKI--RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           I  D   +RI+G   +   R++PL    +  +LE  +    +  +         ++    
Sbjct: 210 IDYDGDVIRIRGTKTQTSDRLIPLTEYFKTRLLERQNQAQSEYVIEYNGHKVTNVK---- 265

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                 R  R   +  G+      + +RH FA+ +L+NG DL+++  +LGH   STT++ 
Sbjct: 266 ------RSFRSALKEAGISYPVRLYDVRHLFASTMLANGADLKAVSKLLGH---STTRMT 316

Query: 299 TNV 301
            +V
Sbjct: 317 ADV 319


>gi|312109424|ref|YP_003987740.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|311214525|gb|ADP73129.1| integrase family protein [Geobacillus sp. Y4.1MC1]
          Length = 301

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 12/152 (7%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAIL 211
           RN AI+ L+   GLR++E  SL   +I+     +++   +GKG+K   V L+    K + 
Sbjct: 139 RNLAIIDLMLYSGLRVNEVSSLEINDIITKDKDVQVIIREGKGNKFATVILVQKHAKNLR 198

Query: 212 EYYDLCP-FDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQ-LRRYLGLP--LSTTAHTLR 266
           ++       D +++   P LF   R    +P   +R I++ L +Y  L      T H  R
Sbjct: 199 KWLKYRKGLDKDIHKSSPRLFVSER----SPFFTERGIQKMLNKYAELANMDHITPHRFR 254

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           HSF  +L + G  +  I+ +  H  + TT IY
Sbjct: 255 HSFCKNLANAGTPIELIRRLARHESIQTTAIY 286


>gi|150008748|ref|YP_001303491.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149937172|gb|ABR43869.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 406

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 248 RQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +QL++ +   G+    + H  RH+F T  LS G  + S+  +LGH  + TTQIY  + ++
Sbjct: 325 KQLKKVMAECGIEKQISYHCARHTFGTLALSKGMPIESVSRVLGHTNIVTTQIYAKITTQ 384


>gi|125717994|ref|YP_001035127.1| site-specific tyrosine recombinase XerS [Streptococcus sanguinis
           SK36]
 gi|166918906|sp|A3CN22|XERS_STRSV RecName: Full=Tyrosine recombinase xerS
 gi|125497911|gb|ABN44577.1| Tyrosine recombinase xerC [Streptococcus sanguinis SK36]
          Length = 356

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 114/297 (38%), Gaps = 52/297 (17%)

Query: 57  KITIQTIRQLSYTEIRAFISKRR---------TQK-IGDRSLKRSLSGIKSFLKYLKKRK 106
           +I +  +  +S  ++ AFI   R         TQ  +   ++ R+LS + S  KYL +  
Sbjct: 65  EIPLSVLENMSKKDMEAFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLYKYLTEEV 124

Query: 107 ITTESNILNMRNLKKSNSL--------PRALNEKQALTLVDNVLLHTSHETKWIDA---- 154
              +      RN+ K  +          RA N KQ L L D     T    ++ID     
Sbjct: 125 ENEQGEPYFYRNVMKKVATKKKKETLAARAENIKQKLFLGD----ETEEFLQYIDTEYPK 180

Query: 155 ---------------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                          R+ AI+ LL   G+R+SEA++L  ++I      + +  KG K   
Sbjct: 181 KLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLKDINLKMMVIEVTRKGGKRDS 240

Query: 200 VPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           V +    +  + EY  +          +    L  +RGI  + ++    ++ + +     
Sbjct: 241 VNVAAFAKPYLEEYLSIRIKRYKAEKTDTAFFLTEYRGIPNR-IDASSVEKMVAKYSE-- 297

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGD 308
              +  T H LRH+ AT L         +   LGH     T +YT++     KN  D
Sbjct: 298 DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|10956870|ref|NP_049090.1| putative phage type integrase/recombinase [Novosphingobium
           aromaticivorans]
 gi|146275536|ref|YP_001165697.1| phage integrase domain/SAM domain-containing protein
           [Novosphingobium aromaticivorans DSM 12444]
 gi|3378303|gb|AAD03886.1| putative phage type integrase/recombinase [Novosphingobium
           aromaticivorans]
 gi|145322227|gb|ABP64171.1| phage integrase domain protein SAM domain protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 463

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 26/92 (28%)

Query: 235 GKPLNPGVFQR-YIRQLRRYL--GLPLSTTAHTLRHSFATHLLSN--------------- 276
           G P+ P  ++  + R  RR +  G+P+  + H LRHSFA H+L+                
Sbjct: 346 GHPVLPNSWEAIFARASRRSMDAGIPVRVSPHQLRHSFAVHMLAMLIQRRLAEAAAPVGA 405

Query: 277 --------GGDLRSIQSILGHFRLSTTQIYTN 300
                   G  L+ +Q +LGH  L+TT IY +
Sbjct: 406 MEGYRQLVGDPLQQVQRLLGHSSLATTSIYLD 437


>gi|317477477|ref|ZP_07936703.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906341|gb|EFV28069.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 586

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 22/157 (14%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDD----------QSTLRIQGKGDKIRIVPLLPSVRKA 209
            ++ C  GL  S+  +L+ +N++ D          +  L  + K   I  +PLLP V  A
Sbjct: 250 FVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRVKLEHRRKASSISNIPLLP-VPLA 308

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           ILE Y   P  +     LP+    +           Y++++  + G+  + T H+ RH+F
Sbjct: 309 ILEKYREHPICVKKGCCLPVMCNQK--------MNSYLKEIADFCGIKKNLTTHSARHTF 360

Query: 270 ATHLLSNGGDLRSIQSILGHFRLST-TQIYTNVNSKN 305
           +T +   G     I    GH       +IY ++ +K+
Sbjct: 361 STIMCRRGVPREDIIIATGHEDTQMLDKIYAHLTAKD 397


>gi|315608577|ref|ZP_07883561.1| integrase [Prevotella buccae ATCC 33574]
 gi|315249748|gb|EFU29753.1| integrase [Prevotella buccae ATCC 33574]
          Length = 318

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 26/187 (13%)

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMD 183
           P+ L+ +    + D V+    H    I AR+      L+ C  G   ++A+S+T  N+  
Sbjct: 132 PKTLSRESFEKIRDLVI--PEHRASHILARD----LFLFACYTGTAYADAVSVTRDNLFT 185

Query: 184 DQST---LRIQGKGDKIR-IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           D +    L+ + K +++R  V LLP    A++E Y     D +     P+        L+
Sbjct: 186 DDNGGLWLKYRRKKNELRACVKLLPEAL-ALIEKYR----DDDRQTLFPM--------LH 232

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIY 298
               +R ++ L     +    T H  RHSFA+ + L  G  + +I  +LGH  L TTQ+Y
Sbjct: 233 YPNMRRLMKCLAVLADIKEDLTYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQVY 292

Query: 299 TNVNSKN 305
             V  K 
Sbjct: 293 AKVTPKK 299


>gi|293400047|ref|ZP_06644193.1| putative tyrosine recombinase XerC [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306447|gb|EFE47690.1| putative tyrosine recombinase XerC [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 341

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 101/232 (43%), Gaps = 25/232 (10%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN--MRNLK 120
           I  + Y EI+A   +    K G      +   IK+   +L K     E +++N     L 
Sbjct: 103 IHLMRYREIKAIHMQDCIDKCGKGY--STQWAIKNLFGHLDK--FALELDVINKSYAQLI 158

Query: 121 KSNSLPRALNEKQALTLVDNVL-LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
            ++ +P     + +   ++ +  ++ S E  W D+    IL  +Y  G RISE LS+   
Sbjct: 159 NADPIPETTKGRLSNEQINTIWKIYESGEYPWADS----ILVFIY-TGFRISELLSIEVA 213

Query: 180 NIMDDQSTLR--IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
           N+  D  T+   ++ +  K RI+P+ P +       YD+    +N   +  LF  + GK 
Sbjct: 214 NVDLDNRTITGGMKSEAGKNRIIPIHPLI-------YDIIVKRMNEGNKY-LF-SLNGKH 264

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
            +   +  +  ++   LG     T H  RH+F + L   G + + I  ++GH
Sbjct: 265 CSKTQYYEFWYEIIDQLGE--HRTPHECRHTFRSLLDDAGANKKCIDMMMGH 314


>gi|170079366|ref|YP_001736004.1| tyrosine recombinase [Synechococcus sp. PCC 7002]
 gi|169887035|gb|ACB00749.1| Tyrosine recombinase [Synechococcus sp. PCC 7002]
          Length = 321

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 13/168 (7%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--QGKGDKIRIVPLLPSVRKAILE 212
           R+ AIL LL+   LR +E +    +++  ++ +L I  +GKG + + V L  +   A+  
Sbjct: 154 RDYAILRLLWDNALRRNEIVQTNLEDLDLERRSLAILGKGKGRQKQWVTLSAATIAALKA 213

Query: 213 YYDLCPFDLNLNIQLPLF----RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           +  + P   N  IQ PLF    R   G  L      + +R   +  G+    + H +RHS
Sbjct: 214 WLAVRPGSKN-KIQ-PLFVALDRAHLGHRLTGTAIYQLVRNTAKAAGVTKLLSPHRIRHS 271

Query: 269 FATHLL-SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
             T  L +  GD+R +Q    H  L+T  IY +    N  D   EI D
Sbjct: 272 GITAALDATNGDVRKVQKFSRHADLNTLMIYDD----NRRDLQGEITD 315


>gi|254244434|ref|ZP_04937756.1| hypothetical protein PA2G_05292 [Pseudomonas aeruginosa 2192]
 gi|126197812|gb|EAZ61875.1| hypothetical protein PA2G_05292 [Pseudomonas aeruginosa 2192]
          Length = 333

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 30/43 (69%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           H LRH+FA+H +  GGD+ ++Q ILGH  ++ T  Y +++ ++
Sbjct: 269 HILRHTFASHYMMGGGDILTLQRILGHSSITMTMRYAHLSPEH 311


>gi|295841279|dbj|BAJ07046.1| integrase [uncultured bacterium]
          Length = 394

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 64/155 (41%), Gaps = 47/155 (30%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYY------ 214
           LLYG GLR+ EAL L  ++I  + S + +  GKG K RI  +LP   + +LE +      
Sbjct: 245 LLYGSGLRLMEALRLRVKDIDFELSQIVVFDGKGKKDRIT-VLPERYRGLLENHLGRVKG 303

Query: 215 ----DL-------------------CPFDLNLNIQLP------------LFRGIRGKPLN 239
               DL                    P +L      P             FR      L+
Sbjct: 304 LHGRDLGRGYAGATFWPALACKLPNAPLELPWQYVFPSQILTVDPHSGRTFR----HHLH 359

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
             V QR +++     G+    T HTLRH+FATHLL
Sbjct: 360 ESVMQRTVKRATARAGIDKRVTCHTLRHTFATHLL 394


>gi|319428228|gb|ADV56302.1| integrase family protein [Shewanella putrefaciens 200]
          Length = 210

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 85/201 (42%), Gaps = 34/201 (16%)

Query: 139 DNVLLHTSHETKWIDAR------NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           D + L T    +++DA            ++L+  G R SEAL+++P+++M + + + I+ 
Sbjct: 18  DRLYLTTEERRRFLDASALESPSERMFCHVLHYTGCRPSEALAISPRHVMVEDAAIVIRS 77

Query: 193 ------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-- 238
                       K  + R VP+ PS    ++E+ DL  F L   ++    R I    L  
Sbjct: 78  LKKHKTDPRGRLKQAQYRSVPVPPS----LIEHLDLV-FGLRAQLR----REIHADSLLW 128

Query: 239 ---NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD--LRSIQSILGHFRLS 293
               P  ++   R + R   +    T   LRH F   +++      L  I  ++GH    
Sbjct: 129 PQSRPTAYRLVKRVMHRAGIVGAQATGKGLRHGFGVAMVTANPPVPLHVISQLMGHSDSK 188

Query: 294 TTQIYTNVNSKNGGDWMMEIY 314
           TT+IY  V S+     +M  +
Sbjct: 189 TTEIYLQVLSEERRSLVMNAW 209


>gi|83719733|ref|YP_443767.1| phage integrase family site specific recombinase [Burkholderia
           thailandensis E264]
 gi|83653558|gb|ABC37621.1| site-specific recombinase, phage integrase family [Burkholderia
           thailandensis E264]
          Length = 159

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 8/143 (5%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
           G R +E L+L  + +  ++S LR+     K  K R+VPL  +   A+ +  D    +   
Sbjct: 12  GCRKNELLALDWRRVDFERSFLRLDAEHTKNGKRRVVPLNSAALSALRDQRDW--VERKC 69

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
           +    +F G  GK +     Q+        +G+  +   H LRH+FA+ L+  G  L  +
Sbjct: 70  SGSEWVFPGWSGKRIQ--TLQKGFNAACARVGIE-NFRIHDLRHTFASWLVMEGVSLYVV 126

Query: 284 QSILGHFRLSTTQIYTNVNSKNG 306
           + +LGH  +S T+ Y +++   G
Sbjct: 127 KDLLGHSSISVTERYAHLSPDQG 149


>gi|327460361|gb|EGF06698.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK1057]
          Length = 356

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 116/305 (38%), Gaps = 68/305 (22%)

Query: 57  KITIQTIRQLSYTEIRAFISKRR---------TQK-IGDRSLKRSLSGIKSFLKYLKKRK 106
           +I +  +  +S  ++ AFI   R         TQ  +   ++ R+LS + S  KYL +  
Sbjct: 65  EIPLSVLENMSKKDMEAFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLYKYLTEEV 124

Query: 107 ITTESNILNMRNLKKSNSL--------PRALNEKQALTLVDNVLLHTSHETKWIDA---- 154
              +      RN+ K  +          RA N KQ L L D     T    ++ID     
Sbjct: 125 ENEQGEPYFYRNVMKKVATKKKKETLAARAENIKQKLFLGD----ETEEFLQYIDTEYPK 180

Query: 155 ---------------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                          R+ AI+ LL   G+R+SEA++L  ++I      + +  KG K   
Sbjct: 181 KLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLKDINLKMMVIEVTRKGGKRDS 240

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-----------IRGKP--LNPGVFQRY 246
           V +    +  + EY         L+I++  ++             RG P  ++    ++ 
Sbjct: 241 VNVAAFAKPYLEEY---------LSIRIKRYKAEKTDTAFFLTEYRGTPNRIDASSVEKM 291

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV---NS 303
           + +        +  T H LRH+ AT L         +   LGH     T +YT++     
Sbjct: 292 VAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQ 349

Query: 304 KNGGD 308
           KN  D
Sbjct: 350 KNALD 354


>gi|319936580|ref|ZP_08010994.1| hypothetical protein HMPREF9488_01827 [Coprobacillus sp. 29_1]
 gi|319808378|gb|EFW04938.1| hypothetical protein HMPREF9488_01827 [Coprobacillus sp. 29_1]
          Length = 283

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 15/158 (9%)

Query: 154 ARNSAILYLL----YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           ++N+  LY++       G+R+SE   +T   +   ++ +  +GK  +I I+P+   +++ 
Sbjct: 121 SKNNERLYMIIQTICATGIRVSEHKYITVDALKKGRAVIINKGKVREI-ILPI--ELKRL 177

Query: 210 ILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRH 267
           +L Y   C      NI+  P+F    GKP++       ++ L     +       H LRH
Sbjct: 178 LLNY---CK---KQNIKCGPIFVTKGGKPMDRSNIWSSMKSLCEDARVDSQKVFPHNLRH 231

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            FA        DL ++ S+LGH  + TT+IYT  + KN
Sbjct: 232 LFAITYYQLEKDLDTLASLLGHTSIDTTRIYTMKSGKN 269


>gi|237738086|ref|ZP_04568567.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
 gi|229419966|gb|EEO35013.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
          Length = 353

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 71/162 (43%), Gaps = 28/162 (17%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTL-------RIQG-------KGDKIRIVPLLPSVR 207
           +L+  G+RI E L+LT ++I     T+       R++G       K  K + V  +P   
Sbjct: 193 ILFWTGIRIGELLALTLKDIDLRNKTISISKSYQRLEGEDVITAPKTTKSKRVVTIPDSV 252

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             +LE Y        L +     + +R  P    +F+  +R      GL      H LRH
Sbjct: 253 VELLERY--------LKMLYKPSKTMRLFPYTKHLFENDLRIYSEKAGLK-KIRIHDLRH 303

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTT-----QIYTNVNSK 304
           S A++L +NG D+ +I   LGH  + TT       YT+ + K
Sbjct: 304 SHASYLFNNGVDILTIAKRLGHENIETTLGIYAHTYTSADEK 345


>gi|147676548|ref|YP_001210763.1| hypothetical protein PTH_0213 [Pelotomaculum thermopropionicum SI]
 gi|147677767|ref|YP_001211982.1| hypothetical protein PTH_1432 [Pelotomaculum thermopropionicum SI]
 gi|147678786|ref|YP_001213001.1| integrase [Pelotomaculum thermopropionicum SI]
 gi|146272645|dbj|BAF58394.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
 gi|146273864|dbj|BAF59613.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
 gi|146274883|dbj|BAF60632.1| hypothetical integrase [Pelotomaculum thermopropionicum SI]
          Length = 361

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 101/241 (41%), Gaps = 35/241 (14%)

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           +++  S  G K FL ++ K K    + IL    +K   S P+ + ++Q   L+D      
Sbjct: 120 KTIPGSRRGFKDFLYHINKDK-EYPAKILK---VKVRRSRPKTIPKEQVGKLIDAC---- 171

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD---------- 195
                  + R+  ++ LL+   +RI EAL+L  ++   D   + I+ +G+          
Sbjct: 172 ------SNLRDKFLIQLLWESSMRIGEALALWLEDFEPDGQKIHIRDRGELPNLAEIKTI 225

Query: 196 -KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQL 250
              R V + P +     +Y  +  F  +      +F  + GK    P+         R+L
Sbjct: 226 CSPRTVDVSPDLINLFFDY--VAEFHTDEVDTNHIFIKLSGKNQYQPMEYQDVASLFRRL 283

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKN-GGD 308
           +   G+ +S   H LRHS  T L   G     ++   GH  + TT QIY + + ++   D
Sbjct: 284 KAKTGIDVS--PHILRHSSLTELRRAGWKPEHLRKRAGHAHVQTTMQIYLHPSDEDLRKD 341

Query: 309 W 309
           W
Sbjct: 342 W 342


>gi|76812135|ref|YP_333123.1| hypothetical protein BURPS1710b_1722 [Burkholderia pseudomallei
           1710b]
 gi|76581588|gb|ABA51063.1| probable site-specific [Burkholderia pseudomallei 1710b]
          Length = 339

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 75/185 (40%), Gaps = 36/185 (19%)

Query: 143 LHTSHETKWIDARNSA----ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKI 197
           LH       IDA  S      + L    G+R  E  SL  +NI  DQ T  +   K D  
Sbjct: 163 LHPDEIQAIIDATESPDLRDFIRLAVATGMRRGELASLRWENIDLDQRTAHLPATKTDTP 222

Query: 198 RIVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR- 252
           R VPL  SV  A+L+         PF +  N    L R           F R +++ RR 
Sbjct: 223 RTVPL-SSVATAVLQARKDAGYTVPFAVTANA---LTRA----------FCRAVQRARRL 268

Query: 253 ------YLGLPLSTT------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                 +L  P+++        H LRH   + L   G +   + SI GH  LS  Q YT+
Sbjct: 269 YESTCTFLERPVTSNWLIGIRLHDLRHEATSRLFEKGLNPMEVASITGHKTLSMLQRYTH 328

Query: 301 VNSKN 305
           + +++
Sbjct: 329 LRAED 333


>gi|134300616|ref|YP_001114112.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134053316|gb|ABO51287.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 367

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 18/160 (11%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-KIRIV---PLLPSVRKAIL--- 211
           +L +L   G+R+ E L L  +++  D+ T++I    D K R V   P   S R+ +    
Sbjct: 186 VLRILAVTGMRLGECLGLMWKDLNFDKGTMKILRSADSKTRKVLDKPKNDSSRRTVTIDK 245

Query: 212 EYYDLCPFD---------LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           E  +L              ++ I+  L   + G+P+      R I+   +   LP+    
Sbjct: 246 ETVELLKTHRKKQAKRKVTSIRIEDELVFHVNGRPITHKAIDRTIKTALKKAELPM-IRI 304

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           H LRH+  + LL  G  L ++ S+LGH   +TT  IY++ 
Sbjct: 305 HDLRHTAGSILLDAGYSLPTVSSLLGHSTPATTAAIYSHA 344


>gi|295402897|ref|ZP_06812822.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975066|gb|EFG50719.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
          Length = 301

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 12/152 (7%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAIL 211
           RN AI+ L+   GLR++E  SL   +I+     +++   +GKG+K   V L+    K + 
Sbjct: 139 RNLAIIDLMLYSGLRVNEVSSLEINDIITKDKDVQVIIREGKGNKFATVILVQKHAKNLR 198

Query: 212 EYYDLCP-FDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQ-LRRYLGLP--LSTTAHTLR 266
           ++       D +++   P LF   R    +P   +R I++ L +Y  L      T H  R
Sbjct: 199 KWLKYRKGLDKDIHKSSPRLFVSER----SPFFTERGIQKMLNKYAELANMDHITPHRFR 254

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           HSF  +L + G  +  I+ +  H  + TT IY
Sbjct: 255 HSFCKNLANAGTPIELIRRLARHESIQTTAIY 286


>gi|260593190|ref|ZP_05858648.1| integrase [Prevotella veroralis F0319]
 gi|260534898|gb|EEX17515.1| integrase [Prevotella veroralis F0319]
          Length = 435

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 79/183 (43%), Gaps = 17/183 (9%)

Query: 158 AILYLLYGC--GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVRKAIL 211
           A L  ++ C  GL I++  +L  ++I    D Q  +R + +  K+  +VPL P     I 
Sbjct: 238 ARLMFIFSCFTGLAIADMETLQYKHIQTAADGQKYIRKERQKTKVEFVVPLHPIAETIIS 297

Query: 212 EYYDLCPFDLNL--NIQLPLFRGIRGKPLNP----GVFQRYIRQLRRYLGLPLSTTAHTL 265
                   DL    + Q    +G  G   +P     V    +  + +  G+    + H  
Sbjct: 298 HCRKANHNDLTTGQDEQTMKEKG-DGFVFHPDSSRSVMNSKLYIVGKACGISQRLSFHMA 356

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           RH+F T  LS G  + SI  ++GH  +S+TQIY  V        + E  D+    +  K+
Sbjct: 357 RHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDCK----ISEDMDRLIAKLFSKE 412

Query: 326 KKN 328
           KKN
Sbjct: 413 KKN 415


>gi|302346775|ref|YP_003815073.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302150547|gb|ADK96808.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 422

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 73/164 (44%), Gaps = 26/164 (15%)

Query: 167 GLRISEALSLTPQNIM---DDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY--DLCPFD 220
           GL   +   L P++I+   D    +RI+  K D   I+PLLP +   IL  Y  D    D
Sbjct: 257 GLARVDMQRLKPKHIIRNADGTEEIRIKRQKTDVEAIIPLLP-IANQILSLYIKDKKADD 315

Query: 221 L---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSN 276
           L   NL I+   F  +     N G   R  + L          T H  RH+F+T + LSN
Sbjct: 316 LIFPNLTIRKASFACV-----NIGQICRIDKGL----------TFHMARHTFSTTICLSN 360

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           G  + ++  +LGH  + TTQIY  +      + M  +  + H +
Sbjct: 361 GISMETLSKMLGHSNIGTTQIYGKITDHKIQEDMTALTHREHSA 404


>gi|253571563|ref|ZP_04848969.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251838771|gb|EES66856.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 412

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 70/155 (45%), Gaps = 20/155 (12%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD 215
            ++ C  GL   +  +L   NI       L I  K  K  I   VPLL  + K ILE Y 
Sbjct: 249 FIFSCFSGLAYVDVANLKEDNIRKSFDGNLWIITKRQKTNIDVNVPLL-DIPKMILEKY- 306

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
                L     LP+   I  + LN      Y++++    G+  + T H  RH+FAT   L
Sbjct: 307 --KGKLPNGKVLPI---ISNQKLNA-----YLKEIAEVCGIKKNLTFHLARHTFATTTTL 356

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGD 308
           + G  + ++  +LGH  + TTQIY  + N+K   D
Sbjct: 357 AKGVPIETVSKMLGHTNIETTQIYARITNNKISND 391


>gi|326389185|ref|ZP_08210762.1| integrase domain-containing protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326206338|gb|EGD57178.1| integrase domain-containing protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 449

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 26/92 (28%)

Query: 235 GKPLNPGVFQR-YIRQLRRYL--GLPLSTTAHTLRHSFATHLLS---------------- 275
           G+P+ P  ++  + R  +R    G PLS + H LRH+FA H+L+                
Sbjct: 332 GQPVRPNSWEVIFTRACKRCAENGFPLSISPHQLRHTFAVHMLALLIQQRLREAALPAGP 391

Query: 276 -------NGGDLRSIQSILGHFRLSTTQIYTN 300
                   G  L+ +Q +LGH  L+TT IY +
Sbjct: 392 VESYRLILGDPLQQVQRLLGHASLTTTYIYLD 423


>gi|269216406|ref|ZP_06160260.1| putative phage integrase [Slackia exigua ATCC 700122]
 gi|269130665|gb|EEZ61743.1| putative phage integrase [Slackia exigua ATCC 700122]
          Length = 353

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           +P NP    R   Q  R  G     T   LRH+FAT ++  G D+R++ S+LGH  ++ T
Sbjct: 238 QPYNPDRLGRDFAQFCRDNGF--ECTFRDLRHTFATFMVGAGVDVRTVASLLGHANVAMT 295

Query: 296 -QIYTNVN 302
             IY   +
Sbjct: 296 LNIYAEAD 303


>gi|259047877|ref|ZP_05738278.1| phage integrase family site-specific recombinase [Granulicatella
           adiacens ATCC 49175]
 gi|259035554|gb|EEW36809.1| phage integrase family site-specific recombinase [Granulicatella
           adiacens ATCC 49175]
          Length = 393

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 78/185 (42%), Gaps = 26/185 (14%)

Query: 158 AILYLLYGCGLRISEALSLTPQNI----------------MDDQSTLRIQGKGDKIRIVP 201
              YLL   GLR  EA +LT  +I                M+D+   + + K + +R + 
Sbjct: 202 TFFYLLSYTGLRCGEAFALTWNDIDFRNHSISVNKTVARSMEDKYISQTKTK-NGMRTIR 260

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           +  S+ + I E+ +L         +  +F+       +      ++ Q+      P   T
Sbjct: 261 INGSLERLISEWKELS------GNETYVFQNRNNSFYSSNTAVYWLNQILEGTNFP-RIT 313

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPS 320
            H  RH+ A+ L   G DL+ IQ  LGH  + TT  IYT+V + N  D   + +D+    
Sbjct: 314 PHGFRHTHASLLAEAGADLKDIQDRLGHGDIQTTANIYTHV-TNNKKDNTNDKFDKLMSI 372

Query: 321 ITQKD 325
             QKD
Sbjct: 373 EGQKD 377


>gi|238751815|ref|ZP_04613302.1| Integrase [Yersinia rohdei ATCC 43380]
 gi|238709944|gb|EEQ02175.1| Integrase [Yersinia rohdei ATCC 43380]
          Length = 86

 Score = 43.9 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           LP     H LRH+FA H + +GG++  +Q ILGH  +  T  Y +
Sbjct: 11  LPAGQLTHVLRHTFAAHFMMSGGNILVLQRILGHSDIQMTMRYAH 55


>gi|327314455|ref|YP_004329892.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|326946337|gb|AEA22222.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 404

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 83/187 (44%), Gaps = 32/187 (17%)

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DD 184
           P+AL+ K+AL  +  +      E   ++A     L+  Y  G    + + L+ ++I+ DD
Sbjct: 218 PKALD-KEALDKLKALRFDELEEE--MEAVRDVFLFACY-IGAAYCDLMELSKKHIVRDD 273

Query: 185 QSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGK 236
             +L ++    K  +   + LLP   + I + +      L PF     I+ P        
Sbjct: 274 AGSLWLKFNRQKTGVLCRIKLLPEAVRLIEKMHSDEREALLPF-----IKYP-------- 320

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTT 295
                 +Q  ++ LR   G+    T+HT RH+FAT + L  G  + ++  +LGH  +S T
Sbjct: 321 -----TYQSCLKALRLRAGISFPFTSHTARHTFATLITLEQGVPIETVSKMLGHTNVSMT 375

Query: 296 QIYTNVN 302
           + Y  V 
Sbjct: 376 ERYAKVT 382


>gi|315608670|ref|ZP_07883650.1| integrase [Prevotella buccae ATCC 33574]
 gi|315249639|gb|EFU29648.1| integrase [Prevotella buccae ATCC 33574]
          Length = 420

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 21/158 (13%)

Query: 162 LLYGC--GLRISEALSLT---PQNIMDDQSTLRIQGKGDKIR-IVPLLPSVRKAILEYYD 215
            ++ C  GL I++   L     Q   D Q  +R + +  K+  +VPL P + +AI+E+  
Sbjct: 242 FIFACFTGLAIADMEHLQYGHIQTAADGQKYIRKERQKTKVEFVVPLHP-IAEAIIEH-- 298

Query: 216 LCPFDLNLN--IQLPLFRGIRGKPLNPGVF----QRYIRQLR-----RYLGLPLSTTAHT 264
            C  +   N  +Q    +G      +  VF     R +   +     R  G+    + H 
Sbjct: 299 -CKAEQERNGGMQSVKEKGESETMTDCLVFPHDCSRSVMAAKLSIVGRACGIRERLSYHM 357

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            RH+F T  LS G  + SI  ++GH  +++TQIY  V 
Sbjct: 358 ARHTFGTMSLSAGIPIESIAKMMGHASIASTQIYAQVT 395


>gi|325679665|ref|ZP_08159240.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324108695|gb|EGC02936.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 362

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 109/257 (42%), Gaps = 35/257 (13%)

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           L   +I AFI ++  + +  R L   +   KS  +Y  +       N+L+   L K N  
Sbjct: 106 LKAKDIYAFIERKLKEGLSVRYLSDIMVLFKSVFRYASREYRI--RNVLDGIVLPKKNKP 163

Query: 126 PRA-LNEKQALTLVDNVLLHTSHETKWIDARNS----AILYLLYGCGLRISEALSLTPQN 180
             A +N++Q L L            K++D R S     I   +Y  GLRI E  +L  ++
Sbjct: 164 EIAVMNKEQQLRL-----------EKYLDKRPSVTSMGISISMY-MGLRIGEVCALQWKD 211

Query: 181 IMDDQSTL-------RIQ----GKGDKIRIV-PLLPSVRKAILEYYDLCPF--DLNLNIQ 226
           I  ++ TL       R+Q     +  K+ I  P   S ++ I     L P       N +
Sbjct: 212 IDLEKRTLTVSKTIQRVQCRTGARHTKLIITEPKSESSKRTIPIPDCLLPMLRQFKDNGE 271

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           + +  G R KP+ P   Q    ++     LP S   H+ RH FAT  +  G D++++  I
Sbjct: 272 VYVVSG-RKKPVEPRTMQYRFAKILHNANLP-SFHYHSTRHLFATRCVELGFDVKTLSEI 329

Query: 287 LGHFRLSTTQIYTNVNS 303
           LGH  +  T    N N+
Sbjct: 330 LGHSSVEVTIPVPNSNT 346


>gi|212691117|ref|ZP_03299245.1| hypothetical protein BACDOR_00607 [Bacteroides dorei DSM 17855]
 gi|212666349|gb|EEB26921.1| hypothetical protein BACDOR_00607 [Bacteroides dorei DSM 17855]
          Length = 415

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 18/146 (12%)

Query: 162 LLYGC--GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVRKAILEYYD 215
            ++ C  GL  ++   L P++I    D +  +RI  K  ++  ++PL P + + IL  Y+
Sbjct: 254 FIFSCLTGLAYADIKQLHPRHIETTADGRRFIRICRKKTEVEAVIPLHP-IAEQILALYN 312

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
               D++ N+  PL       P    ++   IR++   LG     + H  RH F   L+S
Sbjct: 313 TT--DMH-NLVFPL-------PSRDSIWHE-IREIGVILGRNDDLSYHQARHGFGVLLIS 361

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNV 301
               + SI  ++GH  ++TTQ Y  +
Sbjct: 362 ESVSIESIAKMMGHSNITTTQGYARI 387


>gi|167757809|ref|ZP_02429936.1| hypothetical protein CLOSCI_00140 [Clostridium scindens ATCC 35704]
 gi|167664691|gb|EDS08821.1| hypothetical protein CLOSCI_00140 [Clostridium scindens ATCC 35704]
          Length = 113

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 4/75 (5%)

Query: 235 GKPLNPGV---FQRYIRQLRRYL-GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
           GK   P V    +++ R        +PL   AH LRH+ A+H L +G ++  I  +LGH 
Sbjct: 2   GKMTQPAVARILKKHARTAHEACKDVPLGLHAHQLRHAKASHWLEDGMNVLQISFLLGHE 61

Query: 291 RLSTTQIYTNVNSKN 305
           RL TT  Y ++ + +
Sbjct: 62  RLETTMKYLDITTAD 76


>gi|150403371|ref|YP_001330665.1| phage integrase family protein [Methanococcus maripaludis C7]
 gi|150034401|gb|ABR66514.1| phage integrase family protein [Methanococcus maripaludis C7]
          Length = 182

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 75/167 (44%), Gaps = 18/167 (10%)

Query: 152 IDARNSAILY-LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKA 209
           +D++   + + +LYG  LR+SE L++  +NI  ++   ++   K +  +I  +   + + 
Sbjct: 22  VDSKEHKLFFKMLYGMALRVSELLTIEVKNINLNEGVCKLLDTKTETFQICVIPEWLNED 81

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +  +      D  LN    LF+  + +     + +RY +  +    +    + HT R S 
Sbjct: 82  VFGH----IVDNKLNDNDRLFK-FKNRTYAWELVKRYTKDAK----IHKEFSTHTFRRSR 132

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-------GGDW 309
           A HLL++G  L  +   L H  ++TT  Y  +   +        GDW
Sbjct: 133 ALHLLNDGVPLEKVSKYLRHKSINTTMHYLKITVDDIKKELVKIGDW 179


>gi|256159368|ref|ZP_05457151.1| Phage integrase [Brucella ceti M490/95/1]
 gi|256254665|ref|ZP_05460201.1| Phage integrase [Brucella ceti B1/94]
 gi|261221841|ref|ZP_05936122.1| phage integrase [Brucella ceti B1/94]
 gi|265997806|ref|ZP_06110363.1| phage integrase [Brucella ceti M490/95/1]
 gi|260920425|gb|EEX87078.1| phage integrase [Brucella ceti B1/94]
 gi|262552274|gb|EEZ08264.1| phage integrase [Brucella ceti M490/95/1]
          Length = 308

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 21/148 (14%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA--ILEYYDLCPF 219
            L   G R+ EA+ LT  +I + + T  +  K ++ R VPL    RKA  I       PF
Sbjct: 167 FLVDTGCRLGEAIGLTWNDIQEQRVTFWVT-KSNRSRTVPLTRRARKASHIPRERLKGPF 225

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHLLSNG 277
            +                LN   F++   + +  +GL        H LRH+ A+ L+   
Sbjct: 226 SM----------------LNQVRFRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVRGD 269

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            D+R +Q  LGH  L  T  Y ++ + +
Sbjct: 270 IDIRRVQMWLGHQTLQMTMRYAHLATHD 297


>gi|254776421|ref|ZP_05217937.1| phage integrase family protein [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 364

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 15/148 (10%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------GKGDKIRIVPLLPSVRKAILE 212
           ++  L   G R SEAL+L P ++  + ST+RI       G G ++       SVR   + 
Sbjct: 197 LVEFLVASGCRASEALALRPSDVDREASTVRIARAWKRAGSGYELGPPKTKRSVRTINVP 256

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLN-----PGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
              L   D        LF G  G P+        V+ + + + ++  GL      H LRH
Sbjct: 257 KSVLDQLDYGGEW---LFTGTNGGPVRIYSWRSNVWYKSLAKAQKN-GLAKRPRVHDLRH 312

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTT 295
           + A+ ++ NG  L  I+  LGH  + TT
Sbjct: 313 TCASWMIQNGAPLPLIRDHLGHESIKTT 340


>gi|119952366|ref|YP_949908.1| phage integrase family protein [Arthrobacter aurescens TC1]
 gi|119951496|gb|ABM10406.1| phage integrase family domain protein [Arthrobacter aurescens TC1]
          Length = 333

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 9/65 (13%)

Query: 250 LRRYLG------LPLST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           LRR LG      LP  +   T H LRH  A+ L + G D+++IQ +LGH  L+TT  Y +
Sbjct: 248 LRRALGIQVEEWLPAWSGRMTPHVLRHYCASSLYAAGMDIKAIQELLGHQWLATTSGYLH 307

Query: 301 VNSKN 305
           V S +
Sbjct: 308 VRSDH 312


>gi|332829726|gb|EGK02372.1| hypothetical protein HMPREF9455_01642 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 407

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           I Q+   + L  + + H  RHSF T LLS G  + S+  ++GH  ++TTQ+Y  +  +
Sbjct: 323 INQIGTLINLKENLSYHQSRHSFGTLLLSAGVSIESVAKMMGHANINTTQVYAQITEQ 380


>gi|320546738|ref|ZP_08041049.1| phage integrase family site-specific recombinase [Streptococcus
           equinus ATCC 9812]
 gi|320448617|gb|EFW89349.1| phage integrase family site-specific recombinase [Streptococcus
           equinus ATCC 9812]
          Length = 356

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 111/291 (38%), Gaps = 42/291 (14%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRT----------QKIGDRSLKRSLSGIKSFLKYLKKRKI 107
           + + T+  LS  ++ +F+   R           Q +   ++ R+LS + S  KYL +   
Sbjct: 66  VELTTLEHLSKKDMESFVLYLRERPSLNTYSTKQGVSQTTINRTLSALSSLFKYLTEEVE 125

Query: 108 TTESNILNMRNLKKSNSL--------PRALNEKQALTLVDNVLLHTSHETKWID------ 153
               +    RN+ K  +          RA N K  L L D  +    +  K         
Sbjct: 126 DENGDPYFYRNVMKKIATKKKKETLAARAENIKGKLFLGDETIAFIEYIDKEYQNKLSHR 185

Query: 154 ---------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
                     R+ AI+ LL   G+R+SEA++L  +++  +   + +  KG K   V +  
Sbjct: 186 ALSSFQKNKERDLAIIALLLASGVRLSEAVNLDLKDLNLNMMVIEVTRKGGKRDSVNVAA 245

Query: 205 SVRKAILEYYDL-CP-FDLNLNIQLPLFRGIRGKP--LNPGVFQRYIRQLRRYLGLPLST 260
             +  + EY  +  P +      Q       RG P  ++    ++ + +  +     +  
Sbjct: 246 FAKPYLEEYLKIRAPRYKAEKQDQALFLTEYRGVPNRIDASSIEKLVAKYSQ--DFKVRV 303

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGD 308
           T H LRH+ AT L         +   LGH     T +YT++     KN  D
Sbjct: 304 TPHKLRHTLATRLYGATKSQVLVSHQLGHATTQVTDLYTHIVNDEQKNALD 354


>gi|291166248|gb|EFE28294.1| transposase [Filifactor alocis ATCC 35896]
          Length = 411

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 75/190 (39%), Gaps = 47/190 (24%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-------KGDK--------------- 196
           I  +L G G RI E + L   +I  ++ T+ I         K D                
Sbjct: 207 IFTVLLGTGCRIGEVVGLRWSDIDMEKRTIDINHSMTYYPRKTDTYKCEFKVSLPKTEAG 266

Query: 197 IRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +RI+P++  V +A+   Y+       C   ++  +   +F    G   NP    R IR++
Sbjct: 267 VRILPMMQPVYEALETEYERQKEEGFCTAVVD-GMSGFVFSNRFGMIHNPAAINRVIRRI 325

Query: 251 ----------------RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
                           R  + +P   + H LRH+F +    N  +++ IQ I+GH  + T
Sbjct: 326 LEAHNTEEIVKAKKEKREPIMIP-HFSCHHLRHTFCSRFCENETNIKVIQEIMGHASIET 384

Query: 295 T-QIYTNVNS 303
           T  IY   NS
Sbjct: 385 TMDIYAEANS 394


>gi|256840177|ref|ZP_05545685.1| LOW QUALITY PROTEIN: tyrosine type site-specific recombinase
           [Parabacteroides sp. D13]
 gi|256737449|gb|EEU50775.1| LOW QUALITY PROTEIN: tyrosine type site-specific recombinase
           [Parabacteroides sp. D13]
          Length = 267

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 248 RQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R+L+ +    G+  + T H  RH+ AT  LS G  + ++  +LGH ++STTQIY  V   
Sbjct: 194 RKLKHWCTLAGITKNVTFHVARHTAATLNLSLGVPIETVSKLLGHTKISTTQIYAKVIDA 253

Query: 305 N 305
           N
Sbjct: 254 N 254


>gi|237711322|ref|ZP_04541803.1| integrase [Bacteroides sp. 9_1_42FAA]
 gi|229454017|gb|EEO59738.1| integrase [Bacteroides sp. 9_1_42FAA]
          Length = 406

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 248 RQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +QL++ +   G+    + H  RH+F T  LS G  + S+  +LGH  + TTQIY  + ++
Sbjct: 325 KQLKKVMAECGIEKQISYHCARHTFGTLALSKGMPIESVSRVLGHTNIVTTQIYAKITTQ 384


>gi|260889945|ref|ZP_05901208.1| DNA integration/recombination/invertion protein [Leptotrichia
           hofstadii F0254]
 gi|260860551|gb|EEX75051.1| DNA integration/recombination/invertion protein [Leptotrichia
           hofstadii F0254]
          Length = 342

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 104/222 (46%), Gaps = 31/222 (13%)

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR--------ALNEKQALTLVDNVL 142
           +L  IKSF++ L K  +  E +I+ +++  +   LPR           E++   L +N+ 
Sbjct: 130 TLKNIKSFIRMLFKDAM--EMDII-VKDYSEFIKLPRHKPKIERKVFTEEEIALLWENI- 185

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD--KIRIV 200
               +E ++ D     IL L+Y  G+RI+E L L   N+  +Q+ +    K +  K RI+
Sbjct: 186 ----NELEYADV----ILILIY-TGMRINELLKLQKINVDLEQNIITGGSKTEAGKNRII 236

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+ P +   +++  +     L     +P  R       N    + ++  +++   L +  
Sbjct: 237 PIHPKILPLVIKRMENKTEYL-----IPNRRKSNYYEYNNFRIKEFMNIMKQ---LGMEH 288

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           T H  RH+FAT +     +  +I  I+GH  ++ T+ YT+ N
Sbjct: 289 TIHDTRHTFATMISDVSDNETAITGIIGHTNINMTKRYTHTN 330


>gi|256840577|ref|ZP_05546085.1| integrase/site-specific recombinase [Parabacteroides sp. D13]
 gi|256737849|gb|EEU51175.1| integrase/site-specific recombinase [Parabacteroides sp. D13]
          Length = 205

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           F R ++ L+   G+    T++T+RHSFA  L      +  I  +LGH  + TTQIY
Sbjct: 122 FNRNLKTLKEVAGIASDVTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIY 177


>gi|13357781|ref|NP_078055.1| integrase-recombinase protein [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|170762132|ref|YP_001752304.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171920428|ref|ZP_02931743.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|183508815|ref|ZP_02958269.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701999|ref|ZP_02971618.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 6 str. ATCC
           27818]
 gi|34223085|sp|Q9PQS0|XERC_UREPA RecName: Full=Tyrosine recombinase xerC
 gi|11356972|pir||A82919 integrase-recombinase protein UU222 [imported] - Ureaplasma
           urealyticum
 gi|6899190|gb|AAF30630.1|AE002121_6 integrase-recombinase protein [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|168827709|gb|ACA32971.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171902875|gb|EDT49164.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|182675778|gb|EDT87683.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186700776|gb|EDU19058.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 6 str. ATCC
           27818]
          Length = 250

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 29/148 (19%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD-L 216
            I+  L+  G+R  E   L   N     + L + GKG+K R +  +    + + ++Y+ L
Sbjct: 115 TIIRFLFETGIRAHELFFLESIN-----NRLYVLGKGNKKRQIFFVKQTFEQLQKFYENL 169

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
             F+    ++L + + I GK   P                      H+LR SFAT +L  
Sbjct: 170 KGFETTKTLRLYI-KKIIGKNFTP----------------------HSLRRSFATFMLIK 206

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           G + +++   +GH  + TT  Y N+N +
Sbjct: 207 GANPKTVMLQMGHANIQTTFSYLNLNEQ 234


>gi|323482903|ref|ZP_08088304.1| hypothetical protein HMPREF9474_00053 [Clostridium symbiosum
           WAL-14163]
 gi|323403828|gb|EGA96125.1| hypothetical protein HMPREF9474_00053 [Clostridium symbiosum
           WAL-14163]
          Length = 200

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 14/155 (9%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL---RIQGKGDK-IRIVPLLPSVRKAI 210
           RN AI Y+   C LR SE   +T  +      T+   R++G  D  +RIV   P +   I
Sbjct: 20  RNKAIFYIAKYCALRASEVGLITLNDYNPFTGTIHCHRLKGSKDNTLRIVD--PYILTII 77

Query: 211 LEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-HT 264
            +YY     +      N   +  LF   +GKP++  +    +++  +   +P      H 
Sbjct: 78  NQYYYSSLRETLAIKANAKNEY-LFVSQKGKPISRKMLDVIMKRYCKKTTIPSDKRHFHV 136

Query: 265 LRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIY 298
           L+H+ A  L+  G   L  IQ  LGH  +S T IY
Sbjct: 137 LKHTRAMELIKYGEFKLNDIQWWLGHKNISNTMIY 171


>gi|317500300|ref|ZP_07958526.1| integrase/recombinase XerD [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316898308|gb|EFV20353.1| integrase/recombinase XerD [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 426

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 95/198 (47%), Gaps = 30/198 (15%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---------------GKGDK-IRIVPL 202
           ++Y+L+  G+RISE   LT ++I  ++ T+ I                 K D   R++P+
Sbjct: 220 VVYILFHTGMRISEFCGLTLKDIDLEKMTVNIDHQLQRTSDMRYIIETTKTDAGTRVLPI 279

Query: 203 LPSVR---KAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQ-RYIRQLRRY---- 253
              V    +AI+E  +    + +++     LF    G PL    +Q R+   + RY    
Sbjct: 280 TEDVAEMFQAIIEDRNASKVEKDIDGYSGFLFYDDNGMPLVAMHWQHRFNHMVGRYNDIY 339

Query: 254 -LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM- 310
            + +P + T H  RH++ +++   G + +++Q ++GH  +S T  +YT++   +  + + 
Sbjct: 340 RVQMP-NITLHVCRHTYCSNMAKPGMNPKTLQYLMGHSDISVTMNVYTHIGFDDAEEELK 398

Query: 311 -MEIYDQTHPSITQKDKK 327
            +E + +    + QK +K
Sbjct: 399 RIEEFRKARAEVEQKKEK 416


>gi|313123709|ref|YP_004033968.1| site-specific recombinase xerd [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280272|gb|ADQ60991.1| Site-specific recombinase XerD [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 358

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 6/154 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL----LPSVRKAI 210
           R+ A++ L+ G G+R+SE   +  +++   ++TL I  KG +   VP+    LP + K +
Sbjct: 189 RDMAVIALILGTGIRVSECAGVDMKDLNLKEATLDITRKGGQRDSVPVADWTLPYLEKYL 248

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
               D                    + +     ++ + +     G PL  T H LRH+ A
Sbjct: 249 AIRADRYKAPATNKAFFLTSYHQECRRMTTNAIEKMVGKYSAAFGHPL--TPHKLRHTVA 306

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + L     D   +   LG    S T +YT+V+ +
Sbjct: 307 SELYQATKDQVMVAQQLGQKGTSATDLYTHVDQR 340


>gi|307628206|gb|ADN72510.1| putative phage integrase [Escherichia coli UM146]
          Length = 187

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 64/157 (40%), Gaps = 2/157 (1%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILEY 213
           RN  ++ + +  G R SE L L   +I      L I+   +      PLLP     I  +
Sbjct: 26  RNRCLIMMAFIHGFRASELLYLRLSDIDASGKQLNIRRIKNGFSTTHPLLPDEYNLIKLW 85

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                   N      LF   + +P++   F   IR+  +  GL +    H LRH+    L
Sbjct: 86  LKQRKLIENGVEGDWLFLSRKRRPISRQHFFSIIREAGKRAGLAVKAHPHMLRHACGFAL 145

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVN-SKNGGDW 309
             NG D R +Q  LGH  +  T  YT  N ++  G W
Sbjct: 146 ADNGVDTRLLQDYLGHRNIQHTVRYTASNAARFKGVW 182


>gi|295090167|emb|CBK76274.1| Site-specific recombinase XerC [Clostridium cf. saccharolyticum
           K10]
          Length = 467

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS-NGGDLRSIQSIL 287
           +F    G P+   V  R + +L    GLP     H+LRHS  T+ L  NGGD++S+Q   
Sbjct: 322 VFCSPMGTPIEGQVINRALNKLIEDNGLP-KVVFHSLRHSSITYKLKLNGGDMKSVQGDS 380

Query: 288 GHFRLS-TTQIYTNV 301
           GH +L     +Y+++
Sbjct: 381 GHAQLKMVADVYSHI 395


>gi|291561890|emb|CBL40693.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4]
          Length = 284

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 8/138 (5%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G+RISE L +  ++++  Q  + +  KGDKIR V    +V++  L +             
Sbjct: 141 GVRISELLQIRVEDMIRGQ--MDLYSKGDKIRRVYFPQNVQETCLLW-----LQNEKRTS 193

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLR-RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
             LF    G P+     +  ++    RY   P     H  RH FA + +    D+  +  
Sbjct: 194 GSLFLNRFGNPITTNGIRDQLKFFSLRYNLDPSVVHPHAFRHLFAKNFIEKCDDIALLSD 253

Query: 286 ILGHFRLSTTQIYTNVNS 303
           ILGH  + TT+IY + +S
Sbjct: 254 ILGHESIETTRIYLHKSS 271


>gi|229163442|ref|ZP_04291393.1| Integrase/recombinase [Bacillus cereus R309803]
 gi|228620011|gb|EEK76886.1| Integrase/recombinase [Bacillus cereus R309803]
          Length = 332

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 80/173 (46%), Gaps = 12/173 (6%)

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDK 196
           N+LL     T+++D R++  + L+Y  G+R+     L  +++  D   L I G   K  +
Sbjct: 150 NILLSVLDLTRFLDLRDATAILLMYQTGIRVGTLAQLEHRHVDLDTKVLSIDGGIIKNHE 209

Query: 197 IRIVPL---LPSVRKAILEYYDLCPFDLNL-NIQLPLFR---GIRGKPLNPGVFQRYIRQ 249
              +P    L  +   +++  ++   + N+ N  L + +    +   P N  + +R  + 
Sbjct: 210 SIYLPFDDALARLLDVLMKQNEIIRSEYNVKNDYLFITKSGGSVLTSPTNNIISKRMTKH 269

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            + Y GL  +   H +R  FA +LL  G ++  I   LGH  +S T  Y +++
Sbjct: 270 AKEY-GLK-NINPHAIRRGFAKNLLKKGANVALISKALGHSDISVTTRYLHLD 320


>gi|255283631|ref|ZP_05348186.1| phage integrase [Bryantella formatexigens DSM 14469]
 gi|255265893|gb|EET59098.1| phage integrase [Bryantella formatexigens DSM 14469]
          Length = 361

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 33/159 (20%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQG-----KGDKIRIVPLLP------------ 204
           +LY CGLR+ E L+LTPQ+I  D   +RI       +G  +   P  P            
Sbjct: 195 ILYWCGLRVGELLALTPQDIDFDNKVIRITKSYQWLEGKDVITDPKTPKSKRNVSMPDFL 254

Query: 205 --SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
              ++  I   Y + P D   +    L +      +  G  +  ++++R           
Sbjct: 255 CEELKDYIGRLYGILPTDCIFH----LTKSFLHHEMTRGAEKAGVKRIR----------I 300

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H LRHS  + L+S G    SI + +GH  +  T  Y ++
Sbjct: 301 HDLRHSHVSLLISMGFSAVSIGNRVGHESVDITYRYAHM 339


>gi|149919028|ref|ZP_01907513.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
 gi|149820181|gb|EDM79600.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
          Length = 363

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 31/172 (18%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQ----------GKGDKIRIVPLLPSVRKAILEY--- 213
           GLR  E L+L  Q++  +   + ++           K  + R VPL P+     + +   
Sbjct: 189 GLRQGELLALRWQDVCFEARRIAVRQAVAEGILGTPKSGRAREVPLSPATLAEFVRHQAR 248

Query: 214 -------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
                  +  C  D +            G+ L  G+ +  +R+ R    L  +   H LR
Sbjct: 249 YRHLRSPWVFCQLDGDHA----------GEMLTKGMCKWPLRRARDRADLE-ALGWHDLR 297

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           HSFA+HL   G  L++IQ +LGH  +  T  Y ++      D +  +  Q H
Sbjct: 298 HSFASHLAMRGVPLKAIQELLGHSTIEMTMRYAHLAPSTLIDAVAALDPQQH 349


>gi|104774028|ref|YP_619008.1| site-specific tyrosine recombinase XerS [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|103423109|emb|CAI97845.1| Integrase/recombinase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
          Length = 358

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 8/155 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL----LPSVRKAI 210
           R+ A++ L+ G G+R+SE   +  +++   ++TL I  KG +   VP+    LP + K +
Sbjct: 189 RDMAVIALILGTGIRVSECAGVDMKDLNLKEATLDITRKGGQRDSVPVADWTLPYLEKYL 248

Query: 211 LEYYDLCPFDLNLNIQLPLFR-GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
               D        N    L R     + +     ++ + +     G PL  T H LRH+ 
Sbjct: 249 AIRADRYKAPAT-NKAFFLTRYHQECRRMTTNAIEKMVGKYSAAFGHPL--TPHKLRHTV 305

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           A+ L     D   +   LG    S T +YT+V+ +
Sbjct: 306 ASELYQATKDQVMVAQQLGQKGTSATDLYTHVDQR 340


>gi|310828727|ref|YP_003961084.1| phage integrase family site specific recombinase [Eubacterium
           limosum KIST612]
 gi|308740461|gb|ADO38121.1| phage integrase family site specific recombinase [Eubacterium
           limosum KIST612]
          Length = 386

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 31/48 (64%), Gaps = 2/48 (4%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           GLP     H LRH+FAT L   G   R+IQ+ILGH  ++TT  IYT+V
Sbjct: 316 GLP-HFRFHDLRHTFATRLFELGESPRTIQTILGHTDVATTLNIYTHV 362


>gi|319788866|ref|YP_004090181.1| integrase family protein [Ruminococcus albus 7]
 gi|315450733|gb|ADU24295.1| integrase family protein [Ruminococcus albus 7]
          Length = 361

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 111/247 (44%), Gaps = 40/247 (16%)

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-AL 129
           I  FI K+ +Q +  R +   ++ +K+  +Y         +N  N+ N+ +   +P+ A 
Sbjct: 111 ISEFIQKKLSQGLSARYVGDIITVMKAMYRYA--------ANEYNITNVIEGVVMPKKAK 162

Query: 130 NEKQALTLVDN----VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
            E   +T  +       ++T+H     +    A+   L+  G+RI E  +L+ Q+I  ++
Sbjct: 163 PEINIMTAEEKRKLVYYINTNH-----NETTLAVALSLF-TGMRIGEVCALSWQDIDIEK 216

Query: 186 STL-------RIQ---GKGDKIRIV---PLLPSVRKAILEYYDLCPF--DLNLNIQLPLF 230
             L       RIQ   GK  K +I+   P   S ++ I     L P   +L       + 
Sbjct: 217 RVLYVRHTIQRIQNYDGK-SKTKIIITEPKSQSSKREIPIPECLVPMLTELKRKPDSYVL 275

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
            G  G P+ P   Q   + +   LGL  S T H+LRH  A+  +  G D++++  ILGH 
Sbjct: 276 TGT-GTPIEPRTLQYRFKSILNRLGLG-SFTYHSLRHKMASEAIEIGFDVKTLSEILGH- 332

Query: 291 RLSTTQI 297
             S++QI
Sbjct: 333 --SSSQI 337


>gi|240949217|ref|ZP_04753561.1| phage integrase [Actinobacillus minor NM305]
 gi|240296333|gb|EER46977.1| phage integrase [Actinobacillus minor NM305]
          Length = 309

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 19/150 (12%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY 213
            + L+   G+R SEAL++TP++      TL++    +        P     S+RK  L++
Sbjct: 141 FILLVAKTGMRFSEALAITPEDFDFAHQTLQVNKTWNYKEKGGFSPTKNRSSIRKIQLDW 200

Query: 214 YDLCPFDL---NLNIQLPLF---RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-HTLR 266
             +  F     +L    P+F     I    +N G+  R  R+ +      +ST + H LR
Sbjct: 201 QTVIQFSQLIKDLPPDKPIFPCDTAIYNSTIN-GMLARICRKAK------VSTISIHGLR 253

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           H+ A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 254 HTHASLLLFAGVSIASVARRLGHSSMTTTQ 283


>gi|224542983|ref|ZP_03683522.1| hypothetical protein CATMIT_02177 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524121|gb|EEF93226.1| hypothetical protein CATMIT_02177 [Catenibacterium mitsuokai DSM
           15897]
          Length = 281

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 14/156 (8%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I+ +    G+R  E    T +N+    + +R   KG K+R + L   ++K I +Y     
Sbjct: 131 IIKIFAYTGIRCQELKDFTAENM--KHTIIRTNSKG-KVREIILRDDLKKEINQYMKRHG 187

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP----LSTTAHTLRHSFATHLL 274
                     +FR      L P  +Q   R+L++  G           H+ RH F    +
Sbjct: 188 ITGGY-----VFRNDDNDGLIP--YQTIYRKLQKVAGAAKVNKRKVHPHSFRHLFGIVFM 240

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
             GG++  +  I GH  L TT+IY    +K   + M
Sbjct: 241 QQGGNIDELADIYGHSSLETTRIYLRTTAKMKKEKM 276


>gi|189462460|ref|ZP_03011245.1| hypothetical protein BACCOP_03148 [Bacteroides coprocola DSM 17136]
 gi|189430621|gb|EDU99605.1| hypothetical protein BACCOP_03148 [Bacteroides coprocola DSM 17136]
          Length = 413

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 19/150 (12%)

Query: 162 LLYGC--GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRI-VPLLPSVRKAILEYYD 215
            ++ C  GL   +  +L  +NI    D    L++  +     + +PLL  +  AILE Y+
Sbjct: 250 FIFSCFTGLAYIDVYNLKKENICTSFDGSKWLKLHRQKTATPVNLPLL-KIPLAILEKYE 308

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
                L  N  LP+    +           Y++++    G+  + T H  RH+FAT   L
Sbjct: 309 ---GKLKNNRVLPVLSNQKANS--------YLKEIADLCGIKKNITFHLARHTFATTTTL 357

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           S G  + ++  +LGH  + TTQIY  + ++
Sbjct: 358 SKGVPIETVSKLLGHTNIKTTQIYARITNE 387


>gi|333031241|ref|ZP_08459302.1| integrase family protein [Bacteroides coprosuis DSM 18011]
 gi|332741838|gb|EGJ72320.1| integrase family protein [Bacteroides coprosuis DSM 18011]
          Length = 406

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 13/106 (12%)

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPL+  + K ILE Y+    +L  N  LP+   +  + +N      Y++++    G+  +
Sbjct: 292 VPLM-DIPKKILEKYEG---ELPDNKVLPV---LSNQKMNA-----YLKEIGDVCGITKN 339

Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            T H  RH+FAT + L+ G  + ++  +LGH  + TTQIY  + ++
Sbjct: 340 LTFHLARHTFATTVTLAKGIPIETVSKMLGHTNIQTTQIYARITNE 385


>gi|290476600|ref|YP_003469505.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii
           SS-2004]
 gi|289175938|emb|CBJ82741.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii
           SS-2004]
          Length = 183

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 8/154 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEY 213
           R+  +L + +  G R+SE  +L   ++  + S + I+  KG      PL+P   +A+ ++
Sbjct: 27  RDYCMLLMCFIHGFRVSELCNLCLSDLDLNSSIIHIRRLKGGLSTTHPLIPKEIEALKKW 86

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVF---QRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            D+     + +          G      V+   +RY +Q      + +S   H LRH+  
Sbjct: 87  LDIRQKWRDADAPWVFLSQKSGSISRQQVYALLKRYGKQA----SVSVSPHPHMLRHACG 142

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             L   G D R IQ  LGH  +S T IYT  N K
Sbjct: 143 YALADLGRDTRLIQDYLGHRNISHTVIYTASNVK 176


>gi|257898367|ref|ZP_05678020.1| phage integrase [Enterococcus faecium Com15]
 gi|257836279|gb|EEV61353.1| phage integrase [Enterococcus faecium Com15]
          Length = 378

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS- 293
           G  + P V +   R++     L LS   H+LRH+ AT LL NG  ++ I   LGH R+S 
Sbjct: 294 GGLVTPSVVKWNTRRISN--ALSLSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISI 351

Query: 294 TTQIYTNVNSK 304
           T   Y++V  K
Sbjct: 352 TMDTYSHVTDK 362


>gi|254435204|ref|ZP_05048711.1| site-specific recombinase, phage integrase family [Nitrosococcus
           oceani AFC27]
 gi|207088315|gb|EDZ65587.1| site-specific recombinase, phage integrase family [Nitrosococcus
           oceani AFC27]
          Length = 209

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 33/46 (71%), Gaps = 3/46 (6%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPL 202
           ++ LLYG GLRISEA+ L  Q++  D  Q+T+R  GKGDK R+ PL
Sbjct: 88  VVKLLYGSGLRISEAVRLRVQDLDYDYKQTTVR-SGKGDKDRVTPL 132


>gi|186473705|ref|YP_001861047.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184196037|gb|ACC74001.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 316

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 68/161 (42%), Gaps = 22/161 (13%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLC 217
           ++ LL   GLR  EA  LT  ++  DQ  L +Q  KG + R++PL PS  +A+  Y    
Sbjct: 139 MIGLLAASGLRPIEAARLTRNDVDLDQGLLFVQEAKGHRSRLIPLHPSTTEALRTYAQ-- 196

Query: 218 PFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLG-LPLSTTAH----TLRHS 268
               +  ++ P     F   +GKP      Q  +  L R LG LP    AH      RHS
Sbjct: 197 --QRDRLVRQPRSDRFFLLDKGKPAGVPTLQCALETLCRRLGWLPRGDYAHHRCYDFRHS 254

Query: 269 FAT--------HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           F          H +     + ++ + LGH  ++ T  Y   
Sbjct: 255 FVANSLLRSDRHGIDADHAILALSTYLGHASVAHTYWYCTA 295


>gi|324990375|gb|EGC22313.1| site-specific tyrosine recombinase XerC [Streptococcus sanguinis
           SK353]
          Length = 308

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 12/146 (8%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY 213
           ++ L    G+R SEAL +TP +       L I    +        P     SVRK  L++
Sbjct: 141 LILLTAKTGIRFSEALGITPADFDFPHQLLSINKTWNYKEAGEFAPTKNRSSVRKIQLDW 200

Query: 214 YDLCPF---DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
             +  F     +L  + P+F  + GK  N  +    + +  +   +P+  T H LRH+ A
Sbjct: 201 QTVIQFAELTRDLPSEQPIF--VHGKIYNSTI-NNILEKRCKEANVPV-ITLHGLRHTHA 256

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQ 296
           + LL  G  + S+   LGH  ++TTQ
Sbjct: 257 SLLLFAGVSIASVARRLGHASMTTTQ 282


>gi|296169385|ref|ZP_06851008.1| transposase A [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895935|gb|EFG75627.1| transposase A [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 165

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 12/136 (8%)

Query: 168 LRISEALSLTPQNIMDDQSTLRIQ---------GKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +RI E L L   +I   +  + ++          K   +R +P+  ++ +   +Y     
Sbjct: 1   MRIGEVLGLRHNDIASAEHEVTVRRRDNANGARAKSQTVRTIPVSSALIRLFADYLHTEY 60

Query: 219 FDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            DL+ + + + L+   +G PL        +R+LRR  G+      H LRH+ AT LL +G
Sbjct: 61  GDLDSDYVFVNLWGRPQGHPLTYAAVYDLVRRLRRRTGIDFDP--HWLRHTAATRLLRDG 118

Query: 278 GDLRSIQSILGHFRLS 293
             +  +  +LGH  ++
Sbjct: 119 VSIEVVAHLLGHAHVA 134


>gi|295099411|emb|CBK88500.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87]
          Length = 583

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 51/244 (20%), Positives = 106/244 (43%), Gaps = 27/244 (11%)

Query: 60  IQTIRQLSYTE-----IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
           +Q I +L  T+     I  ++   +   +G ++   ++SGI+ F+K+L+ +    +    
Sbjct: 310 LQEISELEVTKCDTSLIDVYLKNLQNGAMGAKTFNTNVSGIQFFMKFLEVKGYIKKVPFY 369

Query: 115 NMRNLKKSNSL--PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL-LYGCGLRIS 171
               L+K   +   R++ E   + ++ N+     H           +++L L+  GLRIS
Sbjct: 370 ASYYLEKQIPVHHDRSVEEDVYMEIIQNLSQFPEH---------LRMMFLHLWCVGLRIS 420

Query: 172 EALSLT--PQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
           E  +L      I +    +++ Q K    + VP+  ++ + +  Y    P +    I   
Sbjct: 421 EVCTLKGDAYYIQNGDCWMKVYQVKMKNYKRVPIPVTLYRLMQVYLKKHPTEKEAYI--- 477

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGL---PLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
            FR  +G   +   F   +++    +G+        +H  RH+ AT+   +G  ++SI+ 
Sbjct: 478 -FRNRKGGAFSKSTFMGQMKKYCSQIGIQNGEYIFKSHDYRHTVATNFYEHGVSIQSIRD 536

Query: 286 ILGH 289
            LGH
Sbjct: 537 YLGH 540


>gi|289192602|ref|YP_003458543.1| integrase family protein [Methanocaldococcus sp. FS406-22]
 gi|288939052|gb|ADC69807.1| integrase family protein [Methanocaldococcus sp. FS406-22]
          Length = 185

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 26/153 (16%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVP--LLPSVRKAILEYYDL 216
           +LYG  LR+SE L+L  ++I  D+   ++   + +  ++ ++P  L+  +R+ I E    
Sbjct: 36  MLYGMALRVSELLNLRVKDINLDEQVAKLWDTKTESFQVCVIPTWLIEDIRQHIREK--- 92

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL----GLPLSTTAHTLRHSFATH 272
               L  + +L  F+            ++Y  +L +Y     G+    + HT R + A H
Sbjct: 93  ---RLKDDDRLFNFKN-----------RKYAWELVKYYTKKAGINKELSTHTFRRTRALH 138

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           LL++G  L  +   L H  ++TT  Y N+  ++
Sbjct: 139 LLNDGVPLEKVSKYLRHKSINTTMKYLNITVED 171


>gi|217958134|ref|YP_002336678.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus cereus AH187]
 gi|217066379|gb|ACJ80629.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus cereus AH187]
          Length = 319

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 128/299 (42%), Gaps = 33/299 (11%)

Query: 16  KERQNWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEEK----ITIQTIRQLSY 68
           +E +N +++  IE+   G +  TLQ Y  D +  L  +  + E K    +T + IR LS 
Sbjct: 16  QENKNLVKDFLIEKKAQGKAASTLQQYHWDLQIILFLIHEHFENKNLIDLTRKDIRNLSI 75

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILN-MRNLKKSNSLP 126
           T     +S  R   +        +S ++S L++         E N+ + +R L K N + 
Sbjct: 76  TFQDMGMSNARVNGL--------MSALRSALEFCADDDDYNYEFNVGSRVRGLPK-NPIR 126

Query: 127 RA--LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
               + E Q   L+D +L     + K++ A     L L Y    R +E   +  + + + 
Sbjct: 127 EITFITEDQINWLIDELL----EQEKYMLA---TYLALSYYSAARKNEVYQVRKEGLTEQ 179

Query: 185 QSTLRIQGK-GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
             T  ++GK G K R+    P V+K I  Y +    D   ++ + +++    K LN  VF
Sbjct: 180 YYTNVVRGKRGKKFRLY-YNPRVQKCIRLYINQRGKDAIPDLFVRVYKNGERKTLNKSVF 238

Query: 244 QRYIRQLRRYL----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             + +   + L    G       H  RHS   +L   G  L  ++S+  H  +STT+ Y
Sbjct: 239 NYWCKIFAKMLYEKEGKEFKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTESY 297


>gi|325686176|gb|EGD28224.1| phage integrase family integrase/recombinase [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 358

 Score = 43.5 bits (101), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 6/154 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL----LPSVRKAI 210
           R+ A++ L+ G G+R+SE   +  +++   ++TL I  KG +   VP+    LP + K +
Sbjct: 189 RDMAVIALILGTGIRVSECAGVDMKDLNLKEATLDITRKGGQRDSVPVADWTLPYLEKYL 248

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
               D                    + +     ++ + +     G PL  T H LRH+ A
Sbjct: 249 AIRADRYKAPATNKAFFLTSYHQECRRMTTNAIEKMVGKYSAAFGHPL--TPHKLRHTVA 306

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + L     D   +   LG    S T +YT+V+ +
Sbjct: 307 SELYQATKDQVMVAQQLGQKGTSATDLYTHVDQR 340


>gi|308069260|ref|YP_003870865.1| Integrase [Paenibacillus polymyxa E681]
 gi|305858539|gb|ADM70327.1| Integrase [Paenibacillus polymyxa E681]
          Length = 366

 Score = 43.5 bits (101), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 124/325 (38%), Gaps = 61/325 (18%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQL---SYTEIRAFISKRRTQ 81
           LS  TL  Y  D   F  +L         T  ++T++ +  L   S T  R F+S +R  
Sbjct: 34  LSPSTLLEYVRDYEAFFSWLRSEGLSTGETNAQVTLEELETLHMDSITGFRLFLSTKREG 93

Query: 82  KIGDRSLKRSLSGIKSFLKYLK------------KRKITTESNILNMRNLKKSNSLPRA- 128
                ++ R LS ++S   YL             KR I  +  I  +   K + +  +  
Sbjct: 94  SNSRITISRKLSSLRSLFHYLSQIAEDENFYPLLKRNIMAKVEIKRIHKPKDTAAKLKGK 153

Query: 129 -------------LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
                        + E     L DN     S+E      R++ I  L+   GLR+SE ++
Sbjct: 154 ILEEEELLEFIGYIYEGYGQDLADNKQALYSYELN--KERDACIASLILNSGLRVSEIVN 211

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR- 234
           L   ++  +   L +  KG+           R+   +  DL    L L+++   +R  + 
Sbjct: 212 LNLDDLDINNKLLYVYRKGNNDETFKTPVYFREQSKD--DLV---LYLSLRHTRYRAPKK 266

Query: 235 --------------GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT-HLLSNGGD 279
                         GK +     Q  I +  +  G P   T H LRHSFAT + L N  D
Sbjct: 267 EKALFVTRPNGSTEGKRMTKRAIQAMIIKYAKRFGKPY-LTVHKLRHSFATDYYLQN--D 323

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSK 304
           +   +  LGH    TT++Y ++  K
Sbjct: 324 IYKTKEQLGHASTETTEVYAHLTDK 348


>gi|225386605|ref|ZP_03756369.1| hypothetical protein CLOSTASPAR_00353 [Clostridium asparagiforme
           DSM 15981]
 gi|225047303|gb|EEG57549.1| hypothetical protein CLOSTASPAR_00353 [Clostridium asparagiforme
           DSM 15981]
          Length = 472

 Score = 43.5 bits (101), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 8/84 (9%)

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS-NGG 278
           D +L + LP      G+P    +  +   +LR   GLP     H+LRHS  T+ L  N G
Sbjct: 326 DFDLVVALP-----NGRPCEDRIILKEFAKLREDAGLP-KVVFHSLRHSSTTYKLKLNHG 379

Query: 279 DLRSIQSILGHFRLST-TQIYTNV 301
           DL++ Q   GH  +   T IY ++
Sbjct: 380 DLKATQGDTGHAEIDMITSIYAHI 403


>gi|172055124|ref|YP_001806451.1| integrase/recombinase [Cyanothece sp. ATCC 51142]
 gi|171701405|gb|ACB54385.1| integrase/recombinase [Cyanothece sp. ATCC 51142]
          Length = 409

 Score = 43.5 bits (101), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           L +Y   P   +AH+LRH+ AT  L  G  L  +Q +LGH    TT +Y ++    G  W
Sbjct: 300 LSKYKPKPRKLSAHSLRHTAATLALRAGATLEQVQDLLGHTDPKTTMVYVHI----GDRW 355

Query: 310 M 310
           +
Sbjct: 356 L 356


>gi|160885910|ref|ZP_02066913.1| hypothetical protein BACOVA_03915 [Bacteroides ovatus ATCC 8483]
 gi|156108723|gb|EDO10468.1| hypothetical protein BACOVA_03915 [Bacteroides ovatus ATCC 8483]
          Length = 318

 Score = 43.5 bits (101), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 86/196 (43%), Gaps = 34/196 (17%)

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           +VD VL + S        RN  IL L    G+RI E  +L  ++I  D+ T+ I    ++
Sbjct: 122 IVDYVLANPS-------PRNLGIL-LTICSGMRIGEVCALQWKDIDLDKKTIHICKTLER 173

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL--------NPGVF----- 243
           I +     +  KA        P   N +  +P+ + I   PL        NP  +     
Sbjct: 174 IYMPGEDGTFNKAKTHIEIGPPKTSNSDRYIPILKNIF--PLVKKFSAVCNPDYYVCTCG 231

Query: 244 QRYI--RQLRRY--------LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           ++Y   R LR Y        + L      H LRH+FAT L+ N  D++++ +ILGH  + 
Sbjct: 232 EQYTEPRTLRNYYEKFILEKVKLDHCIKYHGLRHTFATTLIENKIDVKTVSTILGHSDVG 291

Query: 294 TT-QIYTNVNSKNGGD 308
           TT  IY + + +   D
Sbjct: 292 TTLNIYVHPSEEAKTD 307


>gi|150006793|ref|YP_001301536.1| integrase / site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|150007201|ref|YP_001301944.1| integrase / site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|149935217|gb|ABR41914.1| integrase / site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|149935625|gb|ABR42322.1| integrase / site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
          Length = 310

 Score = 43.5 bits (101), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           F R ++ L+   G+    T++T+RHSFA  L      +  I  +LGH  + TTQIY
Sbjct: 227 FNRNLKTLKEVAGIASDVTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIY 282


>gi|300919026|ref|ZP_07135573.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 115-1]
 gi|300413853|gb|EFJ97163.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 115-1]
          Length = 246

 Score = 43.5 bits (101), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 78/171 (45%), Gaps = 36/171 (21%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRI----------QGKGDKIRIV 200
           D R+  +   ++  G+RI EA +LTP++   D  +  +R+          +   D++R+V
Sbjct: 59  DQRHHMLFATMWNTGIRIGEARTLTPESFDLDGLRPFVRVLSEKVRARRGRPPKDEVRLV 118

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP---GVFQRYIRQLRR----- 252
           PL  +     +E + + P            R  R +PL P      + +++Q  +     
Sbjct: 119 PLTDASFVRQMESW-MVPT-----------RPRRREPLWPVTDETMRNWLKQAVKRAEAD 166

Query: 253 --YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             +  +P+  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 167 GVHFSIPV--TPHTFRHSYIMHMLYHRQPRKVIQALAGHKDPRSMEVYTRV 215


>gi|256840829|ref|ZP_05546337.1| integrase [Parabacteroides sp. D13]
 gi|256738101|gb|EEU51427.1| integrase [Parabacteroides sp. D13]
          Length = 184

 Score = 43.5 bits (101), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 10/80 (12%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRY----------LGLPLSTTAHTLRHSFATHLLSNGG 278
           LF  + G       ++ Y R L R+           G+ L  T++T+RHSFA+ L     
Sbjct: 77  LFPFLSGTRTGEAAYKEYNRTLSRFNHDLKLLARSTGVTLPVTSYTIRHSFASFLKEQDV 136

Query: 279 DLRSIQSILGHFRLSTTQIY 298
            +  I  +LGH  + TTQIY
Sbjct: 137 SIEVISELLGHKSIKTTQIY 156


>gi|160943484|ref|ZP_02090717.1| hypothetical protein FAEPRAM212_00975 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445163|gb|EDP22166.1| hypothetical protein FAEPRAM212_00975 [Faecalibacterium prausnitzii
           M21/2]
          Length = 466

 Score = 43.5 bits (101), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSIL 287
           LFR   G P+ P V  ++ R  R           H LRHS AT+ LL +GGD +S+Q   
Sbjct: 326 LFRLPDGLPIAPDVLTKWYRMWRAEHPEFEKIVFHGLRHSSATYQLLQSGGDFKSVQGNT 385

Query: 288 GH 289
           GH
Sbjct: 386 GH 387


>gi|332364314|gb|EGJ42089.1| phage integrase family site-specific recombinase [Streptococcus
           sanguinis SK1059]
          Length = 383

 Score = 43.5 bits (101), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 100/228 (43%), Gaps = 44/228 (19%)

Query: 93  SGIKSFLKYLKKRKIT----TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           S IK  + + K+ KI      E  IL+ R        P+   ++   +L D   L    E
Sbjct: 131 SEIKKVIIFAKRDKINIHDFAEGVILSGR------PSPKGKKDRYIHSLKDYARLAVYLE 184

Query: 149 TKWIDARNSAILYLLY---GCGLRISEALSLTPQNIMDDQSTLRIQGK------------ 193
            + +D R S + + LY     GLR  E   L+   ++ ++  +R   +            
Sbjct: 185 EQ-LDYRKSVVPFQLYVQLKTGLRAGEVSGLSWDCVLWERQGIRTYRRYDTVRRRWTKPK 243

Query: 194 -GDKIRIVPL----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
             D IR +P+          L ++++ +L +Y L   D N+ +   LF GI         
Sbjct: 244 TEDSIRFIPVDFKVIEILRNLKNIQEELLPFYGLENPD-NV-VFFDLFNGISSN----NT 297

Query: 243 FQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
             ++++ + + L + PL+ T+  LRHS+ + LL+ G D+ ++  ++GH
Sbjct: 298 VNKWLKNILQELNIKPLNMTSTGLRHSYCSSLLAMGIDIWAVSKLMGH 345


>gi|293368539|ref|ZP_06615147.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292636336|gb|EFF54820.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 410

 Score = 43.5 bits (101), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           + ++++ R  G  +  T H  RH+ AT  LLSNG  + ++  +LGH  + TTQIY  + +
Sbjct: 326 KILKEIGRQCGFKVRLTYHVARHTNATTVLLSNGVPIETVSRLLGHTNIKTTQIYAKITA 385

Query: 304 K 304
           +
Sbjct: 386 Q 386


>gi|260642034|ref|ZP_05859208.1| nicotinate-nucleotide pyrophosphorylase [Bacteroides finegoldii DSM
           17565]
 gi|260623760|gb|EEX46631.1| nicotinate-nucleotide pyrophosphorylase [Bacteroides finegoldii DSM
           17565]
          Length = 183

 Score = 43.5 bits (101), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 67/153 (43%), Gaps = 16/153 (10%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           + Y  GLRISE LSL  ++I  D   + I   K  K R+V     V K + E        
Sbjct: 2   ITYMLGLRISETLSLKIKDIDMDNMYVHIHCSKFYKSRLVTFNEQVSKLMQEILQWRSTQ 61

Query: 221 LNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA------HTLRHSFATHL 273
           ++  ++   +F   +GKP+N     +    +R+  GL            H LRH+FA  +
Sbjct: 62  MSPMVEDAYVFINQKGKPVNFVSLHQIFATIRKNAGLYFPDRGRHQPRIHDLRHTFAVDV 121

Query: 274 LSNG-------GDLRSIQSI-LGHFRLSTTQIY 298
           L+N         DL    SI LGH  +S T +Y
Sbjct: 122 LTNWYKSGKNVQDLLPKLSIYLGHLNVSFTSVY 154


>gi|167924633|ref|ZP_02511724.1| integrase/recombinase [Burkholderia pseudomallei BCC215]
          Length = 323

 Score = 43.5 bits (101), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 121/282 (42%), Gaps = 34/282 (12%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
           T ++Y      FL + A      IT +Q +   S+ E+     + RT      ++K+ L+
Sbjct: 43  TRRAYARAASDFLTWCADAGVSSITAVQPLHVASWVEL-----QNRTHAAS--TVKQRLA 95

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKS---NSLPRALNEKQALTLVDNVLLHTSHETK 150
            I+    +L   ++   ++  ++R+   +    + P  L+  +A  L+D++ + T     
Sbjct: 96  AIRHLFDWLVTGQVVPVNSAASVRSPSHTVHTGATP-VLDPAEARQLLDSIDVSTP---- 150

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL--RIQGKGDKIRIVPLLPSVRK 208
            I  R+ A++ L+     RI  AL++   ++   Q  L  R++ KG K   +P   ++  
Sbjct: 151 -IGLRDRALIALMVFSFARIGAALAMRVDDVYVQQRRLWIRLREKGGKAHAMPCHHTLEM 209

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYL---------GLPL 258
           A+  Y D     +  + +  LFR I RG      + +  + Q   Y+         G+  
Sbjct: 210 ALRAYLDGT--GIVFDRKGALFRTIARG---TGQLSETTLAQANAYVMVRRRAAAAGIAT 264

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              +H LR +  T  L NGG L +  +I  H    +TQ Y +
Sbjct: 265 KIGSHALRATGITTYLRNGGTLENAAAIANHVSTRSTQRYGD 306


>gi|187251859|ref|YP_001876341.1| integrase family protein [Elusimicrobium minutum Pei191]
 gi|186972019|gb|ACC99004.1| Integrase family protein [Elusimicrobium minutum Pei191]
          Length = 337

 Score = 43.5 bits (101), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 18/144 (12%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           +L GC  R  E L+L  +++      +RI   K  K R +PL   +R  +L  +   P D
Sbjct: 187 VLTGC--RKMEILNLRWKDVDFYGGIIRITMSKSGKPREIPLANDLRPILLAMH-TNPQD 243

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
              NI +P  +    K L    F+ Y                HT RH+FA+  + N G++
Sbjct: 244 KVFNITVPALKYSFNKLLKKLGFEGY--------------CFHTCRHTFASLYMQNDGNI 289

Query: 281 RSIQSILGHFRLSTTQIYTNVNSK 304
             +Q ILGH  +  T  Y++ + +
Sbjct: 290 TDLQRILGHATIELTMRYSHFSPQ 313


>gi|160937278|ref|ZP_02084640.1| hypothetical protein CLOBOL_02168 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439842|gb|EDP17591.1| hypothetical protein CLOBOL_02168 [Clostridium bolteae ATCC
           BAA-613]
          Length = 296

 Score = 43.5 bits (101), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 9/154 (5%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           D R + +L  +   G+R+SE   +T + +   ++ +  +G+   IR V L   +   +L+
Sbjct: 129 DERMAMLLQTICATGIRVSEVPYITIEAVKQGRAEVECKGR---IRTVFLTSRLCYMLLD 185

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFAT 271
           Y      D  +     +F    GK L+     R +++L     +       H  RH FA 
Sbjct: 186 YAKKSHIDSGM-----IFVTRSGKALDRSNIWRNMKKLCEGADVLWDKVFPHNFRHLFAR 240

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
                  +L  +  ILGH  ++TT+IYT  + +N
Sbjct: 241 LYYEQEKNLVRLADILGHSNINTTRIYTMESGRN 274


>gi|303328057|ref|ZP_07358496.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
 gi|302861883|gb|EFL84818.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
          Length = 380

 Score = 43.5 bits (101), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 18/154 (11%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G+RISE  S+  QNI  D   + I+GK             R A +    +  F    N  
Sbjct: 234 GMRISEIASINKQNINIDARIVHIEGK----------TGFRSAYIPDNLISLFTGLKNRD 283

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-------LSTTAHTLRHSFATHLLSNGGD 279
            P + G R    +     RY + +   +GL             HTLRH+F + L   G  
Sbjct: 284 HPKY-GERCFDKDVSTISRYFKMVVDAIGLNSNVEDSRYKVVFHTLRHTFCSWLAMKGVA 342

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           L +I  ++GH +L  T+ Y  ++     D + +I
Sbjct: 343 LYTIGELVGHKKLEMTKRYAKLSPDTKRDALNKI 376


>gi|296165952|ref|ZP_06848417.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295898696|gb|EFG78237.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 380

 Score = 43.5 bits (101), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 13/152 (8%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI---------MDDQSTLRIQGKGDKIRIVPLLPS 205
           R+  +  LL   GLR+ EAL L   +I         +   +T R + KG   R VP+  +
Sbjct: 204 RDRFLFSLLAASGLRVGEALGLRHSDIDAAARLVTVVPRVNTNRARAKGGG-RQVPVPGA 262

Query: 206 VRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           V +   +Y      +L+ + + + L+ G  G PL        + +LR   G+      HT
Sbjct: 263 VIRLYADYLHGEYGELDSDYVFVNLWSGPIGYPLTYASVYDLVCRLRERTGIMFGP--HT 320

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            RHS+AT LL     +  +  +LGH  ++TT 
Sbjct: 321 FRHSYATELLRRQVPVEVVAHLLGHASIATTS 352


>gi|218129570|ref|ZP_03458374.1| hypothetical protein BACEGG_01147 [Bacteroides eggerthii DSM 20697]
 gi|217988300|gb|EEC54623.1| hypothetical protein BACEGG_01147 [Bacteroides eggerthii DSM 20697]
          Length = 416

 Score = 43.5 bits (101), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 110/262 (41%), Gaps = 28/262 (10%)

Query: 49  FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT 108
           +L    +E I    I +   +  +AF+  +R +  G   + + L  +   +      +I 
Sbjct: 141 YLTSLGKEDIEFSDITEEFGSSYKAFL--KRYKNFGPSQMNKCLCWLSKLVYLAVDYEIL 198

Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
             + + +M   KK     R ++  +   +++  +L    E         A L+ ++  GL
Sbjct: 199 RANPLEDMEYEKKPAPKHRHISRAELKAILETPMLDPLQELG-----RRAFLFSIF-TGL 252

Query: 169 RISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVRKAILEYYDLCPFDLNLN 224
              + + L P +I    D +  +RI  K   +   +PL P + + IL+ Y+        +
Sbjct: 253 AYVDIMLLHPHHIGTTADGRRYIRINRKKTNVEAFIPLHP-IAEQILDLYN------TTD 305

Query: 225 IQLPLFRGIRGKPLNPGVFQRY--IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
              P+F      PL P   + +  I +L   +G   + + H  RHSF T L+S G  + S
Sbjct: 306 DTKPVF------PL-PSRDEMWFEIHELGVAIGRKENLSYHQSRHSFGTFLISEGIPIES 358

Query: 283 IQSILGHFRLSTTQIYTNVNSK 304
           I  ++GH  + TTQ Y  +  K
Sbjct: 359 IARMMGHSGIKTTQRYAEITDK 380


>gi|188588813|ref|YP_001921530.1| phage integrase family protein [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188499094|gb|ACD52230.1| phage integrase family protein [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 382

 Score = 43.5 bits (101), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 3/61 (4%)

Query: 247 IRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
           +R L R + + L      H+LRH+ AT LL  G +++ IQ  LGH + STT  +Y++V +
Sbjct: 300 LRYLSRIINMELQIKFNFHSLRHTHATMLLEGGANIKDIQDRLGHSKFSTTMDLYSHVTA 359

Query: 304 K 304
           K
Sbjct: 360 K 360


>gi|168362056|ref|ZP_02695235.1| site-specific recombinase, phage integrase family protein
           [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|171903405|gb|EDT49694.1| site-specific recombinase, phage integrase family protein
           [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
          Length = 144

 Score = 43.5 bits (101), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 29/144 (20%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD-L 216
            I+  L+  G+R  E   L P N     + L + GKG+K R +  +    + + ++Y+ L
Sbjct: 26  TIIRFLFETGIRAHELFFLEPVN-----NRLYVLGKGNKKRQIFFVKQTFEQLQKFYENL 80

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
             F+    ++L + + I GK   P                      H+LR SFAT +L  
Sbjct: 81  KGFETTKTLRLYI-KKIIGKNFTP----------------------HSLRRSFATFMLIK 117

Query: 277 GGDLRSIQSILGHFRLSTTQIYTN 300
           G + +++   +GH  + TT  Y N
Sbjct: 118 GANPKTVMLQMGHANIQTTFSYLN 141


>gi|119470153|ref|ZP_01612919.1| putative integrase [Alteromonadales bacterium TW-7]
 gi|119446574|gb|EAW27848.1| putative integrase [Alteromonadales bacterium TW-7]
          Length = 313

 Score = 43.5 bits (101), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 69/172 (40%), Gaps = 49/172 (28%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRI----VPLLPSVRKAILEYYDL 216
           LLYG G+R+   L L   +I  D + +RI  GKG K R+    V L+P +R  I     L
Sbjct: 128 LLYGSGMRLMGVLRLRVNDIDFDYNCIRIWDGKGGKNRVVTLAVELIPQLRSQI----QL 183

Query: 217 CPFDLNLNIQLPLFRG-------------------------------------IRGKPLN 239
               L L+++ PL+ G                                     +R   ++
Sbjct: 184 VDSYLQLDLKNPLYSGTYMPHLLRKKYPNHNRQLGWQYLFSSHKLSIDPESKQLRRHHID 243

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR---SIQSILG 288
               QR ++Q      +    T HTLRHSFAT L  N   +R    I+S LG
Sbjct: 244 EKQLQRAVKQTADDAKIRKHVTPHTLRHSFATKLYPNRLKMRVSVGIKSDLG 295


>gi|115378862|ref|ZP_01466001.1| hypothetical protein STIAU_8568 [Stigmatella aurantiaca DW4/3-1]
 gi|115364144|gb|EAU63240.1| hypothetical protein STIAU_8568 [Stigmatella aurantiaca DW4/3-1]
          Length = 161

 Score = 43.5 bits (101), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 13/116 (11%)

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQR-YIRQL 250
           KG + R V L  S  +A+  +  LC P+         +F    G+PL  G+ +   +R L
Sbjct: 34  KGGRERTVDLPTSTVEALKAHRHLCGPY---------VFCQTDGRPLTAGMTKHPLLRAL 84

Query: 251 RRY-LGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           RR  +  P  +   H LRH++ +HL   G  L+ IQ ++GH  +  T  Y +++ +
Sbjct: 85  RRAGVSRPEGSIGWHDLRHTYGSHLAMRGVALKVIQELMGHATIEMTMRYAHLSPE 140


>gi|291434863|ref|YP_003518244.1| tyrosine-based site-specific recombinase activity site-specific DNA
           integration [Cupriavidus metallidurans CH34]
 gi|93359093|gb|ABF13179.1| tyrosine-based site-specific recombinase activity site-specific DNA
           integration [Cupriavidus metallidurans CH34]
          Length = 398

 Score = 43.5 bits (101), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 129/319 (40%), Gaps = 67/319 (21%)

Query: 36  LQSYE-CDTRQFLIFLAFYTEEKITIQTIRQLS--YTEIRAFIS---KRRTQKIGDRSLK 89
           L S++  D   +L FLA      +    +RQ S  +  +R  +S   +R+T  I      
Sbjct: 76  LASWQVADANGYLAFLADPPAHAVGDGRVRQDSPAWRPLRGPLSEASRRQTATI------ 129

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             + G+  +L  ++  ++     +   R+ +   S  R L  +Q   + D V    +  T
Sbjct: 130 --VGGLFEWLVGVEALRVNPFQAVPRARSARGPGSQRRFLEAEQLAAVFDAVEARPA-PT 186

Query: 150 KWID---ARNSAILYLLYGCGLRISEALSLTPQNI------MDDQSTLRI-QGKGDKIRI 199
            W     AR+  +L LL+  GLR SE  +LT  +         D  T+RI + KG   ++
Sbjct: 187 LWAQLHKARDRLLLALLFHTGLRASEVTALTWPDFERQRGRHGDFWTVRIREAKGGSDQL 246

Query: 200 VP----------------LLPSVRK----AILEYYD-----LCPFDLNLNIQLPLFRGIR 234
           VP                L P  R     A++         L P    L +Q  L R +R
Sbjct: 247 VPCDNVMAELARFRQLVGLSPEPRATDTMAVVPAMAGGRQRLAPLTDTLALQRRLSRPVR 306

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPL-------------STTAHTLRHSFATHLLSNGGDLR 281
            +    G++   +RQ+     + L             + + H LRHS ATHLL  G  + 
Sbjct: 307 TRQ---GLYT-IVRQVFEAAAVRLEASGYAEGAANLRAASTHWLRHSHATHLLRAGVPVT 362

Query: 282 SIQSILGHFRLSTTQIYTN 300
            +Q  L H  ++TT+ YT+
Sbjct: 363 DVQRTLRHRDINTTRRYTH 381


>gi|315033819|gb|EFT45751.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0017]
          Length = 408

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 33/173 (19%)

Query: 162 LLYGCGLRISEALSLTPQNI--------MDDQSTLRIQGKGDKI----------RIVPLL 203
           +++  GLR  E ++L   N          D Q   R +  G  I          R + + 
Sbjct: 218 IIFDLGLRKGEVMALRWFNFDFRDNILTFDKQRLYRKERPGQVILDDVKTDAGKRSLKMT 277

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLP--------LFRGIRGKPLNPGVFQRYI----RQLR 251
             VR ++LE Y +  +DL  N+ LP        LF   RGK +   + QR +     ++ 
Sbjct: 278 NRVRNSVLELYSIN-YDLTSNV-LPMTNSNQDFLFINHRGKNVGLPIRQRSVDTAWHRII 335

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +   LP     H  RH+ A  L   G  L  I+ +LGH  + TT+IY +V+++
Sbjct: 336 QKANLP-KIRIHDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVSAE 387


>gi|260891567|ref|ZP_05902830.1| hypothetical protein GCWU000323_02782 [Leptotrichia hofstadii
           F0254]
 gi|260858675|gb|EEX73175.1| integrase [Leptotrichia hofstadii F0254]
          Length = 144

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           L P  ++ Y ++L   L LP   T H+LRH+FAT  +  G D +++  ILGH  ++ T
Sbjct: 62  LKPHRYRYYYQKLLHSLNLP-KLTFHSLRHTFATQAIELGIDCKTVSEILGHASMNAT 118


>gi|256838893|ref|ZP_05544403.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
 gi|319642542|ref|ZP_07997191.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|256739812|gb|EEU53136.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
 gi|317385833|gb|EFV66763.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
          Length = 403

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 18/159 (11%)

Query: 167 GLRISEALSLTPQNI---MDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           GL  ++  +L P++I    + +  +RI+  K D    +PL P +   IL+ Y+    D  
Sbjct: 251 GLAYADTRALHPRHIGTTSEGRRYIRIRRAKTDVEAFIPLHP-IAGQILDLYNTTDDDR- 308

Query: 223 LNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
                P+F      PL    V    +  +   LG+  + + H  RHSF T  L+ G  + 
Sbjct: 309 -----PVF------PLPVRDVLWYEVHGMGVALGMKENLSYHMARHSFGTLTLTAGIPIE 357

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           SI  ++GH  + +TQ+Y  V  +     M  + ++  P+
Sbjct: 358 SIARMMGHTNIDSTQVYAQVTDRKISSDMDRLMERRKPA 396


>gi|118463716|ref|YP_881470.1| phage-related integrase [Mycobacterium avium 104]
 gi|118165003|gb|ABK65900.1| phage-related integrase [Mycobacterium avium 104]
          Length = 402

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 239 NPGVFQRYIRQLRRYL-GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            P + +R IR +RR + GLP   + H LRH  A+ L++ G D++++Q+ L H    TT
Sbjct: 293 GPWIIERAIRDVRRGIDGLPEGFSFHDLRHYLASLLIARGCDVKTVQARLRHSSAKTT 350


>gi|282860290|ref|ZP_06269359.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282586887|gb|EFB92123.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 412

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 71/148 (47%), Gaps = 9/148 (6%)

Query: 162 LLYGC--GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVRKAILEYYD 215
            ++ C  GL IS+  +L  ++I    + Q  +R + +  K+  IVPL P + +AI+ +  
Sbjct: 242 FIFSCFTGLAISDMENLEYKHIQTTAEGQMYIRKERQKTKVEFIVPLHP-IAEAIISHCQ 300

Query: 216 LCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
             P   ++   ++      +  +  +  V    +  + +  G+    + H  RH+F T  
Sbjct: 301 KEPERSEVQQTVKEKGDHLVFHRDCSRSVMDTKLSIVGKACGIRQRLSYHMARHTFGTMS 360

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LS G  + SI  ++GH  +S+TQ+Y  V
Sbjct: 361 LSAGIPIESIAKMMGHASISSTQVYAQV 388


>gi|258516772|ref|YP_003192994.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257780477|gb|ACV64371.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 389

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 27/167 (16%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------GKG---------DKIRIVP 201
           AI+Y+  GCGLR  E + L  ++I   + TL ++       G G            RI+ 
Sbjct: 201 AIVYIALGCGLRRGEIMGLEWKDIDLTKGTLEVRQSSQYLPGHGTFAKSPKNESSERII- 259

Query: 202 LLPSVRKAILEYYDLCPFDLNLNI------QLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            +P+   ++L+ + +   +  L +         LF    GKP++P    ++     +   
Sbjct: 260 AVPTETMSLLKQHRVQQNEQRLQVGGLWQASDRLFTTWDGKPMHPDSITKWFSGFLKNNN 319

Query: 256 L-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTN 300
           L PL    H LRH+ A++++  G  L++I S LGH   +TT  IY +
Sbjct: 320 LSPLPF--HGLRHTAASYMIKAGIPLKNIASRLGHSSPNTTLNIYAH 364


>gi|239828150|ref|YP_002950774.1| integrase [Geobacillus sp. WCH70]
 gi|239808443|gb|ACS25508.1| integrase domain protein SAM domain protein [Geobacillus sp. WCH70]
          Length = 269

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 43/200 (21%), Positives = 94/200 (47%), Gaps = 13/200 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++++ E+ R L + T++ Y  +   F+  L    E++I ++       T  R  I   R 
Sbjct: 48  FIEDCEL-RNLREHTIKYYRSELNAFIKLLK---EQEIELRVSEWTGETIKRNVIMYMRE 103

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   S+   L  +++F  +L+ R +   + + +++ LK    +    + +Q   L   
Sbjct: 104 KGLKTVSINSRLRAMRAFFNFLEGRNLIKSNPMKDIKLLKDRKRIVETFDNQQIKALFKA 163

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRI 199
             L T     ++  R+  I+ LL   G+R++E + +   +I+ +Q  +RI+  KG   R 
Sbjct: 164 CDLRT-----FVGLRDYTIMMLLLETGVRVNELVGIKTTDIIWEQKVIRIRNTKGRFERF 218

Query: 200 VPLLPSVRKAILEYYDLCPF 219
           VP+  ++   +  +YD  P+
Sbjct: 219 VPIQDTL---LYCHYDSEPY 235


>gi|94442234|dbj|BAE93616.1| integron integrase [uncultured bacterium]
          Length = 211

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 93/223 (41%), Gaps = 53/223 (23%)

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           ++L+ I    K +  R++    N++     K+   LP  L++ +  TL+DN         
Sbjct: 4   QALAAILFLYKNVLNRELEWLDNVVRA---KRPKRLPVVLSQAEVCTLLDN--------- 51

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRI--------V 200
             +   N  I  L+YG G+R  E L L   ++  D +  +   GKG+K R+         
Sbjct: 52  --MSGINGLIARLIYGTGMRKMECLRLRVTDVDFDYRQIIARSGKGNKDRVTLLPECLCT 109

Query: 201 PL---LPSVR----KAILEYYDLCPFDLNLNIQLP----------LFRGIRGKPLNP--G 241
           PL   L +VR    K + E Y        L+ + P          +F   R + ++P  G
Sbjct: 110 PLREQLENVRQIHGKDLEEGYGEVGLPFALDRKYPNAGREWKWQYVFPSTR-RSVDPLTG 168

Query: 242 VFQRY----------IRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           V +R+          IRQ      +      HTLRH+FATHLL
Sbjct: 169 VIRRHHWYDTNVSRAIRQSVYNTRINKQVGVHTLRHTFATHLL 211


>gi|265756480|ref|ZP_06090686.1| integrase [Bacteroides sp. 3_1_33FAA]
 gi|263233668|gb|EEZ19283.1| integrase [Bacteroides sp. 3_1_33FAA]
          Length = 407

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 30/46 (65%)

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           LG+  + TAH  RH+F  +++++G  + SI  ++GH  L +TQ+Y 
Sbjct: 329 LGINENLTAHVARHTFGVNMVTSGISMESIAKMMGHSNLRSTQVYA 374


>gi|227891778|ref|ZP_04009583.1| phage integrase [Lactobacillus salivarius ATCC 11741]
 gi|227866437|gb|EEJ73858.1| phage integrase [Lactobacillus salivarius ATCC 11741]
          Length = 381

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 25/175 (14%)

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------GKGDKIRIVPL 202
            K+ +     I  LL   G+RI E L+LT  ++    +T+ I        KG  I+    
Sbjct: 190 AKYYNQEKYTIFRLLAYSGIRIGECLALTWHDLDYKNNTITINKTLARTDKGITIQTPKT 249

Query: 203 LPSVRKAILEY--------------YDLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYI 247
             S R   L+                 L    +N +N    +F   +   +   V    I
Sbjct: 250 KASNRVISLDVETIQILKSWQLEQRKQLLKIGINSMNKHQLIFNSNKNSFIFSSVITYDI 309

Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTN 300
           +Q+ +  G+ P+  T+H  RH+ AT L ++G D++ +Q+ LGH ++ TT  +YT+
Sbjct: 310 KQIAKKAGIHPI--TSHGFRHTHATLLFASGMDIKQVQARLGHSKVQTTLDVYTH 362


>gi|312960859|ref|ZP_07775364.1| integrase/recombinase XerD [Pseudomonas fluorescens WH6]
 gi|311284517|gb|EFQ63093.1| integrase/recombinase XerD [Pseudomonas fluorescens WH6]
          Length = 304

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 23/105 (21%), Positives = 57/105 (54%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           ++ ++  +    +  + ++ ++L MR +K ++            TL+  ++   + + + 
Sbjct: 76  VNAVRGVMNEAWRMSLISQEHLLKMRTVKAASGTRLGQGRNLRRTLIREMMEACAADPRP 135

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
              R++A++ +LYG G+R SE+++L    I  ++ +LR+ GKG+K
Sbjct: 136 QGLRDAAVIGILYGSGMRKSESVNLDLAQIDFEERSLRVIGKGNK 180


>gi|282765828|gb|ADA84951.1| phage integrase family site-specific recombinase [Bacillus phage
           11143]
          Length = 322

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 128/299 (42%), Gaps = 33/299 (11%)

Query: 16  KERQNWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEEK----ITIQTIRQLSY 68
           +E +N +++  IE+   G +  TLQ Y  D +  L  +  + E K    +T + IR LS 
Sbjct: 19  QENKNLVKDFLIEKKAQGKAASTLQQYHWDLQIILFLIHEHFENKNLIDLTRKDIRNLSI 78

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILN-MRNLKKSNSLP 126
           T     +S  R   +        +S ++S L++         E N+ + +R L K N + 
Sbjct: 79  TFQDMGMSNARVNGL--------MSALRSALEFCADDDDYNYEFNVGSRVRGLPK-NPIR 129

Query: 127 RA--LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
               + E Q   L+D +L     + K++ A     L L Y    R +E   +  + + + 
Sbjct: 130 EITFITEDQINWLIDELL----EQEKYMLA---TYLALSYYSAARKNEVYQVRKEGLTEQ 182

Query: 185 QSTLRIQGK-GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
             T  ++GK G K R+    P V+K I  Y +    D   ++ + +++    K LN  VF
Sbjct: 183 YYTNVVRGKRGKKFRLY-YNPRVQKCIRLYINQRGKDAIPDLFVRVYKNGERKTLNKSVF 241

Query: 244 QRYIRQLRRYL----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             + +   + L    G       H  RHS   +L   G  L  ++S+  H  +STT+ Y
Sbjct: 242 NYWCKIFAKMLYEKEGKEFKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTESY 300


>gi|224024735|ref|ZP_03643101.1| hypothetical protein BACCOPRO_01463 [Bacteroides coprophilus DSM
           18228]
 gi|256841208|ref|ZP_05546715.1| integrase [Parabacteroides sp. D13]
 gi|224017957|gb|EEF75969.1| hypothetical protein BACCOPRO_01463 [Bacteroides coprophilus DSM
           18228]
 gi|256737051|gb|EEU50378.1| integrase [Parabacteroides sp. D13]
          Length = 406

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 248 RQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +QL++ +   G+    + H  RH+F T  LS G  + S+  +LGH  + TTQIY  + ++
Sbjct: 325 KQLKKVMAECGIEKHISYHCARHTFGTLALSKGMPIESVSRVLGHTNIVTTQIYAKITTQ 384


>gi|295090219|emb|CBK76326.1| Phage integrase family. [Clostridium cf. saccharolyticum K10]
          Length = 487

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 3/75 (4%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS-NGGDLRSIQSIL 287
           +F    G+P+   V  R +++L +   LP     H+ RH+  T+ L  NGGD++S+Q   
Sbjct: 322 VFCHSSGRPMEGQVINRALKKLIQDNDLP-DVVFHSFRHASITYKLKWNGGDMKSVQGDS 380

Query: 288 GHFRLS-TTQIYTNV 301
           GH R+     +Y+++
Sbjct: 381 GHARMDMVADVYSHI 395


>gi|295837361|ref|ZP_06824294.1| integrase [Streptomyces sp. SPB74]
 gi|197696127|gb|EDY43060.1| integrase [Streptomyces sp. SPB74]
          Length = 426

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 4/75 (5%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSIL 287
           +F   +GKPL+P    R  R+L    G  L T   H LRHS AT LL  G DL  I+ +L
Sbjct: 322 VFTTPKGKPLDPTNLTRSFRRL--LHGAELRTIRFHDLRHSTATLLLEQGVDLVVIKELL 379

Query: 288 GHFRLSTTQ-IYTNV 301
           GH  +  T  +Y +V
Sbjct: 380 GHAHIGVTAGVYAHV 394


>gi|150006222|ref|YP_001300966.1| integrase [Bacteroides vulgatus ATCC 8482]
 gi|149934646|gb|ABR41344.1| integrase [Bacteroides vulgatus ATCC 8482]
          Length = 407

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 30/46 (65%)

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           LG+  + TAH  RH+F  +++++G  + SI  ++GH  L +TQ+Y 
Sbjct: 329 LGINENLTAHVARHTFGVNMVTSGISMESIAKMMGHSNLRSTQVYA 374


>gi|119385844|ref|YP_916899.1| phage integrase family protein [Paracoccus denitrificans PD1222]
 gi|119376439|gb|ABL71203.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 393

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 15/153 (9%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI-- 210
           +A N   L LL GC  R+SE  +L  + +      LR+       ++VP+  +  K +  
Sbjct: 222 EAANCIRLLLLTGC--RLSEIQTLKWRYVDYRNGLLRLPDSKTGAKLVPIGKAAIKVLKT 279

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           +   D  P+ +   ++        G+ L     Q+  R+LR+  GL      H LRHSFA
Sbjct: 280 IPKIDGNPYVITGRME--------GQHLTD--MQKPWRRLRKRAGLD-DLRIHDLRHSFA 328

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +  L  G DL  I  +LGH ++ TT  Y ++ +
Sbjct: 329 SDALQLGQDLTMIGRLLGHTQVQTTARYAHLKT 361


>gi|319939019|ref|ZP_08013383.1| hypothetical protein HMPREF9459_00371 [Streptococcus anginosus
           1_2_62CV]
 gi|319812069|gb|EFW08335.1| hypothetical protein HMPREF9459_00371 [Streptococcus anginosus
           1_2_62CV]
          Length = 380

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 110/254 (43%), Gaps = 43/254 (16%)

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT----TESNILNMRNLKK 121
           ++ ++ +AFI+K       D ++ R  + I+S L + ++ K++    TE  +L+ R    
Sbjct: 106 ITSSQYQAFINKYAETNCRD-NVSRLNAEIRSVLIFARQDKLSIDLFTEGVVLSGR---- 160

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLY---GCGLRISEALSLTP 178
               P++ NE+   +L D   L    E   +D + S I YLLY     G+R  E L LT 
Sbjct: 161 --ESPKSKNERYIHSLEDYKKLCQYLEY-LLDYQESVIPYLLYIQLKTGMRFGEVLGLTW 217

Query: 179 QNIMDDQSTLRIQGKGD-------------KIRIVPL----------LPSVRKAILEYYD 215
             I  +  T++   + D              IR VP+          L + ++ +L  + 
Sbjct: 218 DCINIENKTIKTYRRYDCTRKRWTKAKTETSIRDVPIDDTTVSILQKLKAEQRYVLRSHQ 277

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
           +   D  L      F    G P N  V ++  + L      P + T+  LRH++A+ LL+
Sbjct: 278 VSNSDKCL-----FFDKQSGLPTNSAVNKQLKKILSELSITPSNMTSTGLRHTYASTLLA 332

Query: 276 NGGDLRSIQSILGH 289
              D+ +I   +GH
Sbjct: 333 MDIDIWAIAKNMGH 346


>gi|297172605|gb|ADI23574.1| integrase [uncultured nuHF2 cluster bacterium HF0770_42C12]
          Length = 433

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 50/113 (44%), Gaps = 6/113 (5%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQ 249
           QGK    R VP+ P + + + EY+   P  +     L P   G R    N      Y   
Sbjct: 283 QGK----RRVPISPELSRRLEEYWVAMPVRMKAEGWLFPTRDGTRADSNNWRNRILYPAC 338

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIYTNV 301
            R  LG     T H LRH++AT  L+  G D      ++GH  +STT +Y ++
Sbjct: 339 ERAGLGKDERPTWHMLRHAYATAFLTKRGRDWIKAMELMGHADVSTTMMYKHI 391


>gi|220905619|ref|YP_002480931.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869918|gb|ACL50253.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 398

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 23/185 (12%)

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSA-------ILYLLYGCGLRISEALSLTPQNIMD 183
           E   L  V   +L      ++I+A  +A       ++ + Y  G+R +E   L   +I  
Sbjct: 196 EMPKLNNVKTEMLTKEERARFIEAAKAAPNRKAGQLMLMAYYTGMRRNELFGLKWAHIDF 255

Query: 184 DQSTLRIQG------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
           +   + I G      K ++   +PL P VR+ + E  D        N    +F G  G+ 
Sbjct: 256 EHGFINIVGEKQEGAKSNRDERIPLSPPVRELLAEVGD--------NGSEYVFPGKDGRS 307

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
               +  + +  ++   GLP      H LRH+FA+  +SNG  L  +Q +L H   + TQ
Sbjct: 308 RMIDM-NKQVNAIKAAAGLPKDFRPLHGLRHTFASVAVSNGVPLSHVQKLLTHKDPTLTQ 366

Query: 297 IYTNV 301
            Y ++
Sbjct: 367 RYAHL 371


>gi|160943619|ref|ZP_02090851.1| hypothetical protein FAEPRAM212_01111 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445074|gb|EDP22077.1| hypothetical protein FAEPRAM212_01111 [Faecalibacterium prausnitzii
           M21/2]
          Length = 462

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSIL 287
           LFR   G P+ P V  ++ R  R           H LRHS AT+ LL +GGD +S+Q   
Sbjct: 322 LFRLPDGLPIAPDVLTKWYRMWRAEHPEFEKIVFHGLRHSSATYQLLQSGGDFKSVQGNT 381

Query: 288 GH 289
           GH
Sbjct: 382 GH 383


>gi|295093966|emb|CBK83057.1| Site-specific recombinase XerD [Coprococcus sp. ART55/1]
          Length = 432

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 25/33 (75%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           HTLRH++ T+LLSNG   + +Q +LGH  +STT
Sbjct: 374 HTLRHTYTTNLLSNGAQPKDVQELLGHSDVSTT 406


>gi|293980664|ref|YP_003543422.1| putative integrase/recombinase [Sphingobium japonicum UT26S]
 gi|292677681|dbj|BAI99196.1| putative integrase/recombinase [Sphingobium japonicum UT26S]
          Length = 320

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 95/225 (42%), Gaps = 22/225 (9%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR--ALNEKQALTLVDNVLLH 144
           S+K+ L+G++    +L   ++   +   ++R    S    +   L   +A  L+D + + 
Sbjct: 88  SVKQQLAGVRRLFDWLVIGQVMPVNPAASVRGPAHSQRRGKTPVLAPDEARRLLDTIDVG 147

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL--RIQGKGDKIRIVPL 202
                     R+ A++ L+     RI  ALS+  +++      L  R+  KG K   +P 
Sbjct: 148 GP-----AGLRDRALIGLMVYSFARIGAALSMRVEDVFMQNRRLWVRLHEKGGKQHEMPC 202

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGK------PLNPGVFQRYIRQLRRYLG 255
             ++   +  Y D C  +L    + PLFR I RG       PL        +R  RR + 
Sbjct: 203 HHNLEDYLTAYIDGC--ELRAQAKGPLFRTIARGTKRLSDTPLPQANAFAMVR--RRAVA 258

Query: 256 LPLSTTA--HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             + T    H+ R +  T  L NGG L +  ++  H    TTQ+Y
Sbjct: 259 AEIGTAIGNHSFRATGITTYLKNGGTLETAATMANHSSTRTTQLY 303


>gi|291514510|emb|CBK63720.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
 gi|313157429|gb|EFR56850.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 404

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 19/146 (13%)

Query: 162 LLYGC--GLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLP--SVRKAILEYYDL 216
            ++ C  GL   +A++L  +NI + +   + I+    K  I  ++P   + K+I++ Y+ 
Sbjct: 248 FVFSCFTGLAFVDAMNLKRENITLAENGDMWIKITRQKTNIPSIIPVMDIAKSIIKKYE- 306

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGV-FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
                N N    L       P +P      Y++Q+    G+  + T H  RH++AT  +S
Sbjct: 307 -----NQNDSYVL-------PRSPHQHVNAYLKQIASSCGIKKNMTFHMARHTYATTAMS 354

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNV 301
            G  + +I   +GH  +  TQ Y  V
Sbjct: 355 FGVPIATIAKTMGHANMKMTQHYARV 380


>gi|153852802|ref|ZP_01994239.1| hypothetical protein DORLON_00221 [Dorea longicatena DSM 13814]
 gi|149754444|gb|EDM64375.1| hypothetical protein DORLON_00221 [Dorea longicatena DSM 13814]
          Length = 583

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 51/244 (20%), Positives = 106/244 (43%), Gaps = 27/244 (11%)

Query: 60  IQTIRQLSYTE-----IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
           +Q I +L  T+     I  ++   +   +G ++   ++SGI+ F+K+L+ +    +    
Sbjct: 310 LQEISELEVTKCDASLIDVYLKNLQNGAMGAKTFNTNVSGIQFFMKFLEVKGYIKKVPFY 369

Query: 115 NMRNLKKSNSL--PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL-LYGCGLRIS 171
               L+K   +   R++ E   + ++ N+     H           +++L L+  GLRIS
Sbjct: 370 ASYYLEKQIPVHHDRSVEEDVYMEIIQNLSQFPEH---------LRMMFLHLWCVGLRIS 420

Query: 172 EALSLT--PQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
           E  +L      I +    +++ Q K    + VP+  ++ + +  Y    P +    I   
Sbjct: 421 EVCTLKGDAYYIQNGDCWMKVYQVKMKNYKRVPIPVTLYRLMQVYLKKHPTEKEAYI--- 477

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGL---PLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
            FR  +G   +   F   +++    +G+        +H  RH+ AT+   +G  ++SI+ 
Sbjct: 478 -FRNRKGGAFSKSTFMGQMKKYCSQIGIQNGEYIFKSHDYRHTVATNFYEHGVSIQSIRD 536

Query: 286 ILGH 289
            LGH
Sbjct: 537 YLGH 540


>gi|260590881|ref|ZP_05856339.1| integrase [Prevotella veroralis F0319]
 gi|260537172|gb|EEX19789.1| integrase [Prevotella veroralis F0319]
          Length = 112

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +++++ R  G+  + T H  RH+FA+ + LS G  + S+  +LGH ++ TTQ+Y   + +
Sbjct: 33  HLKKIARLCGIQKTLTFHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPE 92


>gi|298529884|ref|ZP_07017286.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298531276|ref|ZP_07018676.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508886|gb|EFI32792.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509258|gb|EFI33162.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 394

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 111/248 (44%), Gaps = 16/248 (6%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTE--SNILNMRNL 119
           ++ L    + AF+++R  +K    +     SG++ FL+YL  +R+I  +  S ++    +
Sbjct: 146 LKDLDVLHMDAFLAER-NRKYAPETRIHERSGLRGFLRYLYLERQILKKDLSALIQGPPV 204

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
              +  PR L  +Q  TL  ++      + +    R+ A+++L Y  GLR  E   +T  
Sbjct: 205 YAQSRPPRFLTLEQIKTLFQSI-----DKDRPGGLRSYAMIHLAYSLGLRPGEICRVTLD 259

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPS---VRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
           +I+     + +  + +       LP       A    +D  P D      L   R   G 
Sbjct: 260 DILFRDKLIYLPDRKNSSPAKLPLPQGALRALAAYLAWDR-PMDPGHRFLLCNTRTPYG- 317

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           PL P    + I    R  G+    +A+ LRH++A +LL     +  I+ +LGH  + T++
Sbjct: 318 PLTPLTVSQNISACFRRAGI--KGSAYWLRHTYAQNLLQAEASIFEIKEMLGHDIIKTSK 375

Query: 297 IYTNVNSK 304
            Y +V+++
Sbjct: 376 RYLHVHTR 383


>gi|296110508|ref|YP_003620889.1| phage family integrase [Leuconostoc kimchii IMSNU 11154]
 gi|295832039|gb|ADG39920.1| phage family integrase [Leuconostoc kimchii IMSNU 11154]
          Length = 354

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 19/146 (13%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTL------RIQGKG-------DKIRIVPLLPS 205
           IL +    G RISE + +   ++ D + ++      + +  G         IR V + P+
Sbjct: 183 ILAVAIHTGARISEVMGIQISDVSDGKLSINKTWNYKTRTGGFMPTKNLSSIRTVNIDPT 242

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL--STTAH 263
           + K + EY++    +   +  LPL         N  V ++    L +YL L    + + H
Sbjct: 243 IEKLLFEYHEYSEKNNLSDSDLPLLHEKDKHIFNSTVNEK----LHQYLKLRGIGAISVH 298

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGH 289
            LRHS+ + L+SNG  +  I   +GH
Sbjct: 299 KLRHSYISTLISNGIQINYIAKQVGH 324


>gi|227539186|ref|ZP_03969235.1| phage integrase family protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227240868|gb|EEI90883.1| phage integrase family protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 406

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 11/111 (9%)

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +PLLP   + I  Y D  P  +   + LP+        L+      Y++++    G+   
Sbjct: 293 IPLLPQALEIIERYADY-PSCVARGMVLPV--------LSNQKMNSYLKEIADLCGITKK 343

Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTN-VNSKNGGD 308
            T H  RH+FAT + L+N   + ++  +LGH  + TTQ Y   ++++ G D
Sbjct: 344 LTFHMARHTFATTVTLANNVPIETVSKMLGHTNIKTTQHYAKLLDTRIGSD 394


>gi|169349643|ref|ZP_02866581.1| hypothetical protein CLOSPI_00381 [Clostridium spiroforme DSM 1552]
 gi|169293718|gb|EDS75851.1| hypothetical protein CLOSPI_00381 [Clostridium spiroforme DSM 1552]
          Length = 316

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 27/207 (13%)

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           N  + K S  L     EK ALT      L +  +T  +  ++   + +L   GLRISE  
Sbjct: 90  NPFDFKLSEVLENDTKEKVALTEEQEQALLSFIKTDNVYHKHYDDVLILLKTGLRISELC 149

Query: 175 SLTPQNI-------MDDQSTLRIQGKG---------DKIRIVPL----LPSVRKAILEYY 214
            LT  +I       + D   L+ + +G           IR VPL    + + ++ + +  
Sbjct: 150 GLTVADIDFKNEVVIIDHQLLKSKEQGYYIETPKTKSGIRQVPLSRETIQAFQRVMKKRP 209

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNP----GVFQRYIRQL-RRYLGLPLS-TTAHTLRHS 268
              PF ++      LF   +GKP        +F R +++  + +   PL   T HTLRH+
Sbjct: 210 KSEPFVIDGRSNF-LFVNHKGKPKVAIDYNALFVRMVKKYNKHHKDKPLPHITPHTLRHT 268

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTT 295
           F T L S   + + +Q I+GH  +S T
Sbjct: 269 FCTRLASKNMNPKDLQYIMGHSNISIT 295


>gi|298528848|ref|ZP_07016251.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298529857|ref|ZP_07017259.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509231|gb|EFI33135.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510284|gb|EFI34187.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 394

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 110/247 (44%), Gaps = 14/247 (5%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTE--SNILNMRNL 119
           ++ L    + AF+++R  +K    +     SG++ FL+YL  +R+I  +  S ++    +
Sbjct: 146 LKDLDVLHMDAFLAER-NRKYAPETRIHERSGLRGFLRYLYLERQILKKDLSALIQGPPV 204

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
              +  PR L  +Q  TL  ++      + +    R+ A+++L Y  GLR  E   +T  
Sbjct: 205 YAQSRPPRFLTLEQIKTLFQSI-----DKDRPGGLRSYAMIHLAYSLGLRPGEICRVTLD 259

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKP 237
           +I+     + +  + +       LP      L  Y     P D      L   R   G P
Sbjct: 260 DILFRDKLIYLPDRKNSSPAKLPLPQGALRALAAYLAWNRPMDPGHRFLLCNTRTPYG-P 318

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L P    + I    R  G+    +A+ LRH++A +LL     +  I+ +LGH  + T++ 
Sbjct: 319 LTPLTVSQNISACFRRAGI--KGSAYWLRHTYAQNLLQAEASIFEIKEMLGHDIIKTSKR 376

Query: 298 YTNVNSK 304
           Y +V+++
Sbjct: 377 YLHVHTR 383


>gi|266623937|ref|ZP_06116872.1| site-specific recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
 gi|288864249|gb|EFC96547.1| site-specific recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
          Length = 311

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 15/87 (17%)

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGV----FQRYIRQLRRYLG------LPLSTTAHTLRHS 268
           FD N      +F    GK ++P      F+R IR     +       +P + T H LRH+
Sbjct: 201 FDKNY-----IFTQENGKQMHPSSPYHQFKRIIRLYNENIAEDEDHMIPPNATQHDLRHT 255

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTT 295
            A+ L+SN  D RS+  +LGH   STT
Sbjct: 256 AASILISNNMDPRSVAGVLGHSNASTT 282


>gi|323438484|gb|EGA96236.1| integrase [Staphylococcus aureus O11]
          Length = 171

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 7/109 (6%)

Query: 206 VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           ++KAILE      ++   LN N    +F   +G P+    F + +R+  + +G+    ++
Sbjct: 57  LKKAILENKKDSKWNDGYLNRNF---VFTNHKGNPMQTERFNKILRESAKDVGIEKEISS 113

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           H LRHS  + L   G  L++I   +GH    TT  IY++V  +   D M
Sbjct: 114 HILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMM 162


>gi|283797481|ref|ZP_06346634.1| putative integrase [Clostridium sp. M62/1]
 gi|291074849|gb|EFE12213.1| putative integrase [Clostridium sp. M62/1]
 gi|295090011|emb|CBK76118.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 334

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 2/83 (2%)

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R + + P   QR  + L +  G+      H+LRHSFA+  + NG D +++  ILGH  + 
Sbjct: 251 RAQFMEPRGVQRRFKNLLKKCGIE-PVNIHSLRHSFASKWIENGFDSKALSEILGHSSVK 309

Query: 294 -TTQIYTNVNSKNGGDWMMEIYD 315
            T  IY + + +    +M  + D
Sbjct: 310 ITMDIYVHSSMRQKKSYMDRVLD 332


>gi|323138767|ref|ZP_08073832.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322396014|gb|EFX98550.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 306

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 69/165 (41%), Gaps = 14/165 (8%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
           ++ ++ LL   GLR+SEAL+L   +++        Q K +K R+VP+  SV  A+  Y  
Sbjct: 130 HAMLIGLLAATGLRVSEALNLRLGDLLPGGVLHIRQTKFNKSRLVPMHASVITALDAYLR 189

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL----PLSTTAHTLRHSFAT 271
           +      ++    +F  + GKP+  G        +    G+    P     H LRH+FAT
Sbjct: 190 IRATVAGIDDH--VFLTVGGKPMGLGTVHAAFHAILDKAGIAPDRPRRPRIHDLRHTFAT 247

Query: 272 HLLSNGG--------DLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
             L            D  ++ + LGH  +  T  Y        GD
Sbjct: 248 RALEQCAMRRADVARDFVALSTYLGHGHIRHTYWYLESTPDLMGD 292


>gi|319783595|ref|YP_004143071.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169483|gb|ADV13021.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 439

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 241 GVFQ---RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           G FQ   R   ++ +  GLP   T H LRHS  +  +S G  L  + +ILGH    +TQI
Sbjct: 341 GHFQGTKRIWPKVTKKAGLP-GVTPHVLRHSLGSAAVSGGMALPMVAAILGHADTRSTQI 399

Query: 298 YTNVN 302
           Y +V 
Sbjct: 400 YAHVQ 404


>gi|298531269|ref|ZP_07018669.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508879|gb|EFI32785.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 394

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 110/247 (44%), Gaps = 14/247 (5%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTE--SNILNMRNL 119
           ++ L    + AF+++R  +K    +     SG++ FL+YL  +R+I  +  S ++    +
Sbjct: 146 LKDLDVLHMDAFLAER-NRKYAPETRIHERSGLRGFLRYLYLERQILKKDLSALIQGPPV 204

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
              +  PR L  +Q  TL  ++      + +    R+ A+++L Y  GLR  E   +T  
Sbjct: 205 YAQSRPPRFLTLEQIKTLFQSI-----DKDRPGGLRSYAMIHLAYSLGLRPGEICRVTLD 259

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKP 237
           +I+     + +  + +       LP      L  Y     P D      L   R   G P
Sbjct: 260 DILFRDKLIYLPDRKNSSPAKLPLPQGALRALAAYLAWNRPMDPGHRFLLCNTRTPYG-P 318

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L P    + I    R  G+    +A+ LRH++A +LL     +  I+ +LGH  + T++ 
Sbjct: 319 LTPLTVSQNISACFRRAGI--KGSAYWLRHTYAQNLLQAEASIFEIKEMLGHDIIKTSKR 376

Query: 298 YTNVNSK 304
           Y +V+++
Sbjct: 377 YLHVHTR 383


>gi|256841348|ref|ZP_05546855.1| integrase [Parabacteroides sp. D13]
 gi|256737191|gb|EEU50518.1| integrase [Parabacteroides sp. D13]
          Length = 407

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           G+ +R I+++    G+    + H  RHS+A   L  G  + S+  ILGH  ++TTQIY  
Sbjct: 321 GINKR-IKKVAVMCGIKKRVSFHVSRHSWAVLALEYGMPIESVSKILGHTNITTTQIYAK 379

Query: 301 VNS 303
           V S
Sbjct: 380 VTS 382


>gi|254774451|ref|ZP_05215967.1| putative transposase [Mycobacterium avium subsp. avium ATCC 25291]
 gi|254777682|ref|ZP_05219198.1| putative transposase [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 635

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 109/267 (40%), Gaps = 29/267 (10%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE----SNI 113
           I +++I +++   +  +++  R+  IG +     +  +  F   +++ +  T+    +  
Sbjct: 245 IGVESIDRINRPVLERYLANLRSDSIGAQRRGTHIGLLNRFFATVRQHRWDTDLPADAMF 304

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
                 K+   LPRAL E+    L D   L      ++ D  +  I  +L  CGLRI++A
Sbjct: 305 FAEDYPKRDERLPRALAEQVMTQLEDPDNL-----ARYADPAHRLITIILMRCGLRITDA 359

Query: 174 LSLTPQNIMDDQST---LR-IQGKGDKIRIVPLLPSVRKAILEYYDLC----PFDLNLNI 225
           L L    ++ D      LR +  K  +  +VP+   +R+ I E+ +      P    +  
Sbjct: 360 LRLRSDCVVADAEGAPYLRYLNHKMKRDALVPIDEQLRELIAEHRNHTSQRWPAGTPVLF 419

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYL---------GLPLSTTAHTLRHSFATHLLSN 276
             P  + I G   +P     Y   L R+L         G P+  T H  RH+  T L++ 
Sbjct: 420 PRPT-KNIDGT--HPIASPTYRMALLRWLSVCDIRDEHGQPVHLTPHQWRHTLGTRLINR 476

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNS 303
                 ++ IL H     T  Y  ++ 
Sbjct: 477 DVPQEVVRRILDHDSAQMTGHYARLHD 503


>gi|58616455|ref|YP_195584.1| putative site specific integrase [Azoarcus sp. EbN1]
 gi|56315917|emb|CAI10560.1| putative site specific integrase [Aromatoleum aromaticum EbN1]
          Length = 328

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 57/267 (21%), Positives = 111/267 (41%), Gaps = 21/267 (7%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
            A + E++  I  +R +    + A++   +T ++   S+K+ L+ I+    +L   ++  
Sbjct: 60  FAAWCEQEARITALRDIEPVHVAAYVETLQT-RLSAPSVKQHLAAIRMLFDWLVVGQVVA 118

Query: 110 ESNILNMRNLK---KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
            +    +R  K   K    P  L   +A  L+D + + T+     +  R+ A++ L+   
Sbjct: 119 TNPASAVRGPKHSVKKGKTP-VLAADEARALLDAIDVSTA-----VGLRDRALIGLMVYT 172

Query: 167 GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
             RI  AL +  +++     +S +R+  KG K   +P   ++ + +  Y +     L   
Sbjct: 173 FARIGAALKMRIEDVYVQGRRSWVRLHEKGGKRHEMPCHHNLEEYLHAYIEGA--QLAGA 230

Query: 225 IQLPLFRGIRG-------KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            +  LFR   G       +P++     R I +     G+      H+ R +  T  L NG
Sbjct: 231 GKAFLFRTAIGHTGRLSERPMSQADAYRMIGRRAADAGILTRIGNHSFRATGITEYLRNG 290

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSK 304
           G L   Q +  H    TT +Y   N +
Sbjct: 291 GKLEIAQQMANHESARTTGLYDRRNDQ 317


>gi|330994361|ref|ZP_08318288.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
 gi|329758556|gb|EGG75073.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
          Length = 388

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            Q+  R++R+  GL      H LRHSFA+  L  G DL  I  +LGH  + TT  Y ++ 
Sbjct: 304 LQKPWRRIRKAAGLD-GVRLHDLRHSFASDALEMGADLTMIGRMLGHSDIKTTSRYAHLK 362

Query: 303 SKN 305
            +N
Sbjct: 363 REN 365


>gi|304404690|ref|ZP_07386351.1| integrase family protein [Paenibacillus curdlanolyticus YK9]
 gi|304346497|gb|EFM12330.1| integrase family protein [Paenibacillus curdlanolyticus YK9]
          Length = 359

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 108/291 (37%), Gaps = 52/291 (17%)

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           S    R F+  R        S+ R LS ++S   YL +     +   L  RN+    S+ 
Sbjct: 79  SIDSFRMFLMTRTEHTNMRVSVTRKLSSLRSLFHYLSQIAEDEQFYPLLKRNVMAKVSIK 138

Query: 127 RALNEKQALTLVDNVLLHTSHETKWID------------------------ARNSAILYL 162
           R    K     ++  LL       ++                          R++ I+ L
Sbjct: 139 RTSKPKDTAAKLEGKLLQEEEIAAFLSYVERDYEQDVAKNKQALYSYQLNKVRDACIISL 198

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLL--PSVRKAILEYYDLC 217
           +   GLR+SE ++L   +I D +  L     +GK D     P+       +++ +Y  L 
Sbjct: 199 ILHSGLRVSEVVNLNVDDI-DLKKKLSYVFRKGKNDDTFKTPVYFRQEAVESLSQYMQLR 257

Query: 218 PFDLNLNIQLP-----LFRGI-----RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
               +L    P     LF  I      G  +     Q  + +  +  G P   + H LRH
Sbjct: 258 ----DLAYHAPKREKGLFLAIANGKKEGSRMTKRAIQEMVIKYAKRFGKPY-LSVHKLRH 312

Query: 268 SFAT-HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           SFAT + L N  D+   Q  LGH    TTQIY ++  +     M E  D T
Sbjct: 313 SFATDYYLRN--DIYKTQEQLGHASPETTQIYAHLTDRT----MAEAIDHT 357


>gi|300813158|ref|ZP_07093534.1| site-specific tyrosine recombinase XerS [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300495873|gb|EFK31019.1| site-specific tyrosine recombinase XerS [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 358

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 6/154 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL----LPSVRKAI 210
           R+ A++ L+ G G+R+SE   +  +++   ++TL I  KG +   VP+    LP + K +
Sbjct: 189 RDMAVIALILGTGIRVSECAGVDIKDLNLKEATLDITRKGGQRDSVPVADWTLPYLEKYL 248

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
               D                    + +     ++ + +     G PL  T H LRH+ A
Sbjct: 249 AIRADRYKAPATNKAFFLTSYHQECRRMTTNAIEKMVGKYSAAFGHPL--TPHKLRHTVA 306

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + L     D   +   LG    S T +YT+V+ +
Sbjct: 307 SELYQATKDQVMVAQQLGQKGTSATDLYTHVDQR 340


>gi|293371770|ref|ZP_06618180.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|291516009|emb|CBK65219.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
 gi|292633222|gb|EFF51793.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 411

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           IR + +  G+    T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY  +  +
Sbjct: 329 IRAVAKRCGITKHITWHVARHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKE 387


>gi|255016623|ref|ZP_05288749.1| integrase / site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 198

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           F R ++ L+   G+    T++T+RHSFA  L      +  I  +LGH  + TTQIY
Sbjct: 115 FNRNLKTLKEVAGIASDVTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIY 170


>gi|237726754|ref|ZP_04557235.1| tyrosine type site-specific recombinase [Bacteroides sp. D4]
 gi|229435280|gb|EEO45357.1| tyrosine type site-specific recombinase [Bacteroides dorei
           5_1_36/D4]
          Length = 419

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 223 LNIQLPLFRGIRGKPLNPGVF--------QRYIRQLRRYLGLPLSTTAHTLRHSFATHL- 273
           L+I L +    RG+  +  +F         R ++ +    GL    T +  RHSFAT + 
Sbjct: 282 LDIPLRIIEKYRGEGKDGKLFYVPITGNLNRSLKMIAEQCGLECHLTYYQSRHSFATLIC 341

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           L+NG  + SI  ++GH  + TTQIY  + ++
Sbjct: 342 LNNGVPIESISKMMGHSSIRTTQIYAEITNQ 372


>gi|237733524|ref|ZP_04564005.1| integrase [Mollicutes bacterium D7]
 gi|229383357|gb|EEO33448.1| integrase [Coprobacillus sp. D7]
          Length = 397

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 27/207 (13%)

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           N  + K S  L     EK ALT      L +  +T  +  +    + +L   GLRISE  
Sbjct: 171 NPFDFKLSEVLENDTKEKIALTEEQEQALLSFIKTDNVYHKYYDDVLILLKTGLRISELC 230

Query: 175 SLTPQNI-------MDDQSTLRIQGKG---------DKIRIVPL----LPSVRKAILEYY 214
            LT  +I       + D   L+ + +G           IR VPL    + + ++ + +  
Sbjct: 231 GLTVADIDFKNEVVIIDHQLLKSKEQGYYIETPKTKSGIRQVPLSRETIQAFQRVMKKRP 290

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-YIRQLRRY----LGLPLS-TTAHTLRHS 268
              PF ++      LF   +GKP     +   ++R +++Y    +  PL   T HTLRH+
Sbjct: 291 KAEPFVIDGRGNF-LFVNPKGKPKVAIDYSTLFVRMVKKYNKHHMDNPLPHITPHTLRHT 349

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTT 295
           F T L S   + + +Q I+GH  +S T
Sbjct: 350 FCTRLASKNMNPKDLQYIMGHSNISIT 376


>gi|254472511|ref|ZP_05085911.1| phage integrase [Pseudovibrio sp. JE062]
 gi|211958794|gb|EEA93994.1| phage integrase [Pseudovibrio sp. JE062]
          Length = 365

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 75/185 (40%), Gaps = 19/185 (10%)

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV- 206
           E    + +   I+ LL   G R  E   L    +  +Q TL  +      + +P+  +V 
Sbjct: 195 EADGANPKAVKIIKLLALTGARRGEIEQLKWSEVFLEQGTLHFEDSKTGQKSIPISAAVI 254

Query: 207 ---RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              R+A  E     P+         +F   RG     G  + + R LR   G       H
Sbjct: 255 GLLREAEQERCIDSPY---------VFPSERGDGFYVGATKVW-RDLRTKFG-DEKLRMH 303

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            LRHSFA+  ++ G  L  I ++LGH   +TTQ Y ++++    D +  I DQ    +  
Sbjct: 304 DLRHSFASLAVAGGASLPMIGALLGHKDTATTQRYAHLSA----DPLRSISDQVGAKLLG 359

Query: 324 KDKKN 328
            D  N
Sbjct: 360 TDDGN 364


>gi|196247964|ref|ZP_03146666.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|196212748|gb|EDY07505.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 179

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +F   +G+P++P    R  R++ + L +    T H LRH+ AT L+  G  ++ +  ILG
Sbjct: 89  VFINDKGRPIDPDYLTRKFREIVKTLNVK-KITLHGLRHTAATLLMKLGVHVKIVSDILG 147

Query: 289 HFRLSTT-QIYTNVNSK 304
           H R+  T   Y++ N +
Sbjct: 148 HSRVQVTLDFYSHSNEE 164


>gi|83590631|ref|YP_430640.1| Phage integrase [Moorella thermoacetica ATCC 39073]
 gi|83573545|gb|ABC20097.1| Phage integrase [Moorella thermoacetica ATCC 39073]
          Length = 390

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 77/178 (43%), Gaps = 29/178 (16%)

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--------------QGK 193
           ET   D    A L  L G GLR  E L L  Q++   +  L++              + K
Sbjct: 188 ETAKQDPLYPAFLLAL-GTGLRRGEILGLRWQDLDLQKGILQVRQSLIRTREGLKFEEPK 246

Query: 194 GDKIR-IVPLLPSVRKAILEYYD--------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
            +K R  +PL PSV  A+  +          L P   + ++  P+  G   +P +P  F 
Sbjct: 247 TEKSRRQIPLPPSVVAALKRHKAWVNQNKLILGPDYEDHDLVFPVENG---RPRDPKGFA 303

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
            Y  +L    GLP     H LRH+ AT LL  G   + +Q  LGH  +S T  IY+++
Sbjct: 304 EYFNRLLDKAGLP-HIRLHDLRHTHATLLLLEGVHPKVVQERLGHSTVSITLDIYSHI 360


>gi|85707317|ref|ZP_01038401.1| putative integrase/recombinase [Roseovarius sp. 217]
 gi|85707508|ref|ZP_01038584.1| putative integrase/recombinase [Roseovarius sp. 217]
 gi|85667965|gb|EAQ22850.1| putative integrase/recombinase [Roseovarius sp. 217]
 gi|85668198|gb|EAQ23075.1| putative integrase/recombinase [Roseovarius sp. 217]
          Length = 305

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 72/157 (45%), Gaps = 21/157 (13%)

Query: 158 AILY-LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           A+L+ L+   GLRISEAL+LT  +++ D      + K  K R+VPL PS+   +L+ Y  
Sbjct: 130 AVLFGLIASTGLRISEALNLTLSDVLPDGILHIRKTKFGKNRMVPLHPSM-MGVLDRY-- 186

Query: 217 CPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYL----GLPLSTTAHTLRHSF 269
              +L L++      LF     + +   V  R   ++        G P     H LRH+F
Sbjct: 187 --LELRLDVAAEDDHLFLSEGKRKIYYSVPHRAFHEILAIAAIAPGRPRRPRIHDLRHTF 244

Query: 270 ATHLLSNGGDLR--------SIQSILGHFRLSTTQIY 298
           AT +L   G  R        ++ + +GH  L  T  Y
Sbjct: 245 ATRVLEKSGAGREAIARNAVALMTYMGHSNLRYTYWY 281


>gi|291524649|emb|CBK90236.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 432

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 25/33 (75%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           HTLRH++ T+LLSNG   + +Q +LGH  +STT
Sbjct: 374 HTLRHTYTTNLLSNGAQPKDVQELLGHSDVSTT 406


>gi|253569630|ref|ZP_04847039.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840011|gb|EES68093.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 81

 Score = 43.5 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 26/40 (65%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           H+LRHS A+++L NG  + +I  +LGH   +TT  Y  +N
Sbjct: 14  HSLRHSLASNMLENGATMPTISEVLGHRNTATTMTYLKIN 53


>gi|22094596|gb|AAM91928.1|AF525419_1 site-specific recombinase [Xenorhabdus nematophila]
          Length = 187

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 18/159 (11%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEY 213
           R+  +L + +  G R+SE  +L+  ++  + + + I+  KG      PL+P    A+ ++
Sbjct: 27  RDYCMLLMCFLHGFRVSELCNLSLSDLDLNSAIIHIRRLKGGLSTTHPLIPEEIDALKKW 86

Query: 214 YDL--------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            D+         P+     + L    G   +    G+ +RY ++      + +S   H L
Sbjct: 87  LDVRQEWREADSPW-----VFLSQKSGAVSRQQVYGLLKRYGKKA----SVSVSPHPHML 137

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           RH+    L   G D R IQ  LGH  +S T IYT  N K
Sbjct: 138 RHACGYALADLGRDTRLIQDYLGHRNISHTVIYTASNVK 176


>gi|315123290|ref|YP_004065296.1| Integrase [Pseudoalteromonas sp. SM9913]
 gi|315017050|gb|ADT70387.1| Integrase [Pseudoalteromonas sp. SM9913]
          Length = 198

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 75/156 (48%), Gaps = 11/156 (7%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI---VPLLPSVRKAILEY 213
           A+L L     LR  + LSL  +++   DQ   R+Q    K RI     + P  +++I  +
Sbjct: 38  ALLNLAIDSKLRSCDLLSLKVRDVATQDQVFERVQWIQKKTRIEVQFEITPRTQQSISRW 97

Query: 214 YDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGLPLSTTA-HTLRHSFA 270
                 ++ L  +  LFR +R   +P++   ++  IR     LGL  +    H++R + A
Sbjct: 98  VQ----EVKLQPKDYLFRSLRRSNQPISYSYYRSIIRSWAEQLGLDSALYGTHSMRRTKA 153

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           T + +   ++R++Q +LGH ++  T  Y  +  ++ 
Sbjct: 154 TLVYARTKNIRAVQLLLGHTKIDNTIRYLGIEIEDA 189


>gi|256839862|ref|ZP_05545371.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256738792|gb|EEU52117.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 409

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 10/89 (11%)

Query: 230 FRGIRGKPLNP------GVFQRYIRQLR---RYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
           +RG   K  +P      G +Q  +  LR   R  G     T H  RH+FA   +  G  L
Sbjct: 305 YRGDNEKKSSPDKVFPVGEYQTMVSSLRVLTRKCGSSTEITPHIGRHTFAVLAILKGMPL 364

Query: 281 RSIQSILGHFRLSTTQIYTN-VNSKNGGD 308
            ++Q +LGH  + +TQIY   +N K G D
Sbjct: 365 ETLQKVLGHKSILSTQIYAELINPKVGED 393


>gi|110834215|ref|YP_693074.1| transposon protein A [Alcanivorax borkumensis SK2]
 gi|110647326|emb|CAL16802.1| Transposon protein A [Alcanivorax borkumensis SK2]
          Length = 400

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 31/163 (19%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI------------MDDQSTLRIQGKGDKIRIVPL 202
           R++ ++ LLY  G+RI EAL L   ++             D+++  R + K  + R +P+
Sbjct: 202 RDAFLVTLLYNTGMRIGEALGLRHADVDLADGVIWVIPRSDNENGARAKSK--RARAIPV 259

Query: 203 LPSVRKAILEYYD--------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +P     +LE Y+        L  F+        +F  ++   +   + + Y   L+ YL
Sbjct: 260 MPY----LLEMYEDYITSTEYLAAFESGTEY---VFCNVKKGRIGKALSRSYAENLKTYL 312

Query: 255 --GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                 + T H  RH+ A+  +++G  L ++   LGH    TT
Sbjct: 313 IKRTGYTFTWHHFRHTHASEAIADGHGLLAVADRLGHASPQTT 355


>gi|24378732|ref|NP_720687.1| putative integrase [Streptococcus mutans UA159]
 gi|24376599|gb|AAN57993.1|AE014872_1 putative integrase [Streptococcus mutans UA159]
          Length = 181

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 26/155 (16%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR--------------------I 199
           +Y+    GLR  E   LT   ++ +Q  ++   + D +R                    +
Sbjct: 1   MYVQLKTGLRTGEIAGLTWDCVLWEQQAIKTYRRYDTVRRRWTKPKTEESVRKVPIDSKV 60

Query: 200 VPLLPSVRKAILEYYDLCPF--DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           + +L  +     EY DL     D N+ I L LF GI+    N GV +R    L+     P
Sbjct: 61  IKVLDDLHAIQKEYLDLYYIINDDNV-IFLDLFYGIQS---NNGVNKRLRSILKELDIAP 116

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
            + ++  LRHS+ + LL+ G D+ ++  ++GH  +
Sbjct: 117 KNMSSTGLRHSYCSLLLAKGVDIWAVAKLMGHIDI 151


>gi|299141181|ref|ZP_07034318.1| integrase [Prevotella oris C735]
 gi|298577141|gb|EFI49010.1| integrase [Prevotella oris C735]
          Length = 444

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 13/156 (8%)

Query: 158 AILYLLYGC--GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVRKAIL 211
           A L  ++ C  GL I++  +L  ++I    D Q  +R + +  K+  +VPL P     I 
Sbjct: 238 ARLMFIFSCFTGLAIADMETLQYKHIQTTADGQKYIRKERQKTKVEFVVPLHPIAETIIS 297

Query: 212 EYYDLCPFDLNL--NIQLPLFRGIRGKPLNP----GVFQRYIRQLRRYLGLPLSTTAHTL 265
                   DL    + Q    +G  G   +P     V    +  + +  G+    + H  
Sbjct: 298 HCRKANHNDLTTRQDEQTMKEKG-DGFVFHPDSSRSVMNSKLYIVGKACGISQRLSFHMA 356

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           RH+F T  LS G  + SI  ++GH  +S+TQIY  V
Sbjct: 357 RHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQV 392


>gi|295841232|dbj|BAJ07012.1| integrase [uncultured bacterium]
          Length = 393

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 67/154 (43%), Gaps = 39/154 (25%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKG--DKIRIVP--LLPSVRKAILEY 213
           IL LLYG G+R+ E + L  ++I  D+  + I+ GKG  D++ ++P    P + K +   
Sbjct: 241 ILGLLYGSGMRLMETVRLRVKDIDFDRRQILIRDGKGSKDRVTVLPERFGPPLEKHLARM 300

Query: 214 YDLCPFDLN---------------------------------LNIQLPLFRGIRGKPLNP 240
             L   DL+                                 L ++    R +R   L+ 
Sbjct: 301 KVLHERDLDRGGGAATFWPALSRKFPTAPKKWWWQYVFPASRLTVEAGTGRQVRHH-LHH 359

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
              Q  +R+  R  G+P   T H+LRH+FATHLL
Sbjct: 360 SAVQHALREGVRRSGIPKRVTCHSLRHTFATHLL 393


>gi|253563307|ref|ZP_04840764.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|251947083|gb|EES87365.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
          Length = 394

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 62/145 (42%), Gaps = 31/145 (21%)

Query: 166 CGLRISEALSLTPQNIMDDQSTL--RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
           CGLR S+ + L  ++I D  + L  R+  K     I PL P  R  ++E           
Sbjct: 247 CGLRFSDTMDLRWKDI-DFANCLIRRMMIKTKTEVITPLFPMARDILME----------- 294

Query: 224 NIQLPLFRGIRGKPL--NPGVFQRY--------IRQLRRYLGLPLSTTAHTLRHSFATHL 273
                  R   GK +  +  VF  +        +R+  +  G+    T H+ RH+FAT L
Sbjct: 295 -------RSNNGKLIGSDEKVFYNFAEPTVNQALRKEAKLAGIDKHITYHSSRHTFATLL 347

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIY 298
           + +  D+  I   LGH  ++ TQ Y
Sbjct: 348 VIDNVDIYKISKYLGHKSVNMTQRY 372


>gi|238925711|ref|YP_002939228.1| integrase [Eubacterium rectale ATCC 33656]
 gi|238877387|gb|ACR77094.1| integrase [Eubacterium rectale ATCC 33656]
          Length = 432

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 25/33 (75%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           HTLRH++ T+LLSNG   + +Q +LGH  +STT
Sbjct: 374 HTLRHTYTTNLLSNGAQPKDVQELLGHSDVSTT 406


>gi|33322708|gb|AAQ07088.1|AF496401_1 possible integrase/recombinase [Lactobacillus delbrueckii subsp.
           lactis]
          Length = 166

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 10/157 (6%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL----LPSVRKAI 210
           R+ A++ L+ G G+R+SE   +  +++   ++TL I  KG +   VP+    LP + K +
Sbjct: 13  RDMAVIALILGTGIRVSECAGVDMKDLNLKEATLDITRKGGQRDSVPVADWTLPYLEKYL 72

Query: 211 LEYYDL--CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
               D    P            +  R    N    ++ + +     G PL  T H LRH+
Sbjct: 73  AIRADRYKAPATNKAFFLTSYHQECRRMTTN--AIEKMVGKYSAAFGHPL--TPHKLRHT 128

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            A+ L     D   +   LG    S T +YT+V+ + 
Sbjct: 129 VASELYQATKDQVMVAQQLGQKGTSATDLYTHVDQRE 165


>gi|323344118|ref|ZP_08084344.1| tyrosine recombinase XerC [Prevotella oralis ATCC 33269]
 gi|323094847|gb|EFZ37422.1| tyrosine recombinase XerC [Prevotella oralis ATCC 33269]
          Length = 70

 Score = 43.5 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 31/54 (57%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           H  RH+FAT  LS G  + S+  +LGH  + TTQIY  + +K     M ++ D+
Sbjct: 6   HVARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQLADK 59


>gi|301057500|ref|ZP_07198595.1| conserved hypothetical protein [delta proteobacterium NaphS2]
 gi|300448398|gb|EFK12068.1| conserved hypothetical protein [delta proteobacterium NaphS2]
          Length = 62

 Score = 43.5 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 27/42 (64%)

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           HS+ATH+L  G DL  +Q ILGH  + TT  YT++ S  G +
Sbjct: 1   HSYATHMLEAGVDLIELQQILGHVSVLTTTRYTHLTSNTGNN 42


>gi|227327444|ref|ZP_03831468.1| phage integrase family protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 337

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 92/229 (40%), Gaps = 29/229 (12%)

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNE 131
            +    R +++  R+L   L+  ++    L +  +   E+ + NMR  +   +       
Sbjct: 113 GYARSNRVKEVTPRTLNLELAYFRAMFNELTRLGEWKGENPLKNMRPFRTEEA------- 165

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           + A    D + L  S   +       A++ +    G R SEA +L    +   + T    
Sbjct: 166 EMAYLTQDQIALFLSECQRHEHPHLQAVVKICLSTGARWSEAENLRRSQLSPYKITFTYT 225

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            KG + R VP    + KA+ E              LP  +G R      G F+  +   R
Sbjct: 226 -KGRRNRAVP----ISKALYE-------------SLPENKG-RLFTDCYGAFRSALE--R 264

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             + LP     H LRH+FA+H +  GG++  +Q +LGH  +  T  Y +
Sbjct: 265 TGIELPAGQLTHVLRHTFASHFMMKGGNILVLQRVLGHTDIKMTMRYAH 313


>gi|153814784|ref|ZP_01967452.1| hypothetical protein RUMTOR_00999 [Ruminococcus torques ATCC 27756]
 gi|317500288|ref|ZP_07958515.1| transposase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|145847815|gb|EDK24733.1| hypothetical protein RUMTOR_00999 [Ruminococcus torques ATCC 27756]
 gi|316898331|gb|EFV20375.1| transposase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 420

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 54/210 (25%)

Query: 131 EKQALTLVDNV-----LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           ++QA++L D       + +  H  ++ DA      Y+L+  GLRISE    T +++   +
Sbjct: 185 KRQAVSLEDEAKFLEFVKNDPHYNQYYDA-----FYILFKTGLRISEFCGFTVKDLDFKE 239

Query: 186 STLRIQGKGDK----------------IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP- 228
             + +  +  +                 R++P+   V++A L         +  N + P 
Sbjct: 240 DIINVNHQLQRTREMKYIIVSTKTTSGTRLLPMEADVKEAFLR--------ILKNRRKPK 291

Query: 229 -----------LFRGIRGKPLNPGVFQRYIRQLR-RY-----LGLPLSTTAHTLRHSFAT 271
                      LF    G+P+    +++Y++  R +Y     L LP   T H  RH++ T
Sbjct: 292 REPMVDGYGGFLFLDKNGRPMVALHWEKYMQHAREKYNREHLLQLP-PITPHVCRHTYCT 350

Query: 272 HLLSNGGDLRSIQSILGHFRLSTT-QIYTN 300
           ++ ++G + +++Q ++GH  +S T  IYT+
Sbjct: 351 NMANSGMNPKTLQYLMGHSDISVTLNIYTH 380


>gi|158522964|ref|YP_001530834.1| integrase family protein [Desulfococcus oleovorans Hxd3]
 gi|158511790|gb|ABW68757.1| integrase family protein [Desulfococcus oleovorans Hxd3]
          Length = 409

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 112/279 (40%), Gaps = 25/279 (8%)

Query: 61  QTIRQLSYTEIRAFISKR-----RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           +TI  L + +I AF  +R       +K   R+++ +L   +      +KR + T  N  +
Sbjct: 140 ETIGNLPFGKIAAFHVERVKKAMADKKKAGRTIQYALQVTRQVFNMARKRGVYTGENPTS 199

Query: 116 MRNLKKSNSLP-RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
                K +++  R L+  +A  L D  L   SH     +  + A+L L    GLR  E  
Sbjct: 200 AVKWPKLDNMKMRYLSIDEAEKLFD-ALAAKSH-----NLHDMALLSLH--SGLRFGEIA 251

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
            LT   +     TL I       R   L    +  +    +  P +L    +  L   I 
Sbjct: 252 KLTWSCVNWKAGTLAILDAKTGSRTAYLTTRAKAMLKNREEGAPNELIFQKRSGLDGSI- 310

Query: 235 GKPLNPGVFQRYIRQLRRYLGL---PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
                   F R +++L    G+       T HTLRHS+ATHL  +  DL   Q  LGH  
Sbjct: 311 --ARASKTFSRVVKELGLNQGITDRKQKVTFHTLRHSYATHLYESTHDLYLTQKSLGHTT 368

Query: 292 LSTTQIYTNV--NSKNGGDWMMEIYDQTHPSITQKDKKN 328
            + TQ Y  +  N    G   +E   +T+    QK KKN
Sbjct: 369 STMTQRYAKMTENRLREGSAALEAAFKTNG---QKKKKN 404


>gi|56550669|ref|YP_161735.1| integrase/recombinase E2 protein [Cupriavidus metallidurans CH34]
 gi|56410375|emb|CAI30257.1| hypothetical integrase/recombinase E2 protein [Cupriavidus
           metallidurans CH34]
          Length = 364

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 129/319 (40%), Gaps = 67/319 (21%)

Query: 36  LQSYE-CDTRQFLIFLAFYTEEKITIQTIRQLS--YTEIRAFIS---KRRTQKIGDRSLK 89
           L S++  D   +L FLA      +    +RQ S  +  +R  +S   +R+T  I      
Sbjct: 42  LASWQVADANGYLAFLADPPAHAVGDGRVRQDSPAWRPLRGPLSEASRRQTATI------ 95

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             + G+  +L  ++  ++     +   R+ +   S  R L  +Q   + D V    +  T
Sbjct: 96  --VGGLFEWLVGVEALRVNPFQAVPRARSARGPGSQRRFLEAEQLAAVFDAVEARPA-PT 152

Query: 150 KWID---ARNSAILYLLYGCGLRISEALSLTPQNI------MDDQSTLRI-QGKGDKIRI 199
            W     AR+  +L LL+  GLR SE  +LT  +         D  T+RI + KG   ++
Sbjct: 153 LWAQLHKARDRLLLALLFHTGLRASEVTALTWPDFERQRGRHGDFWTVRIREAKGGSDQL 212

Query: 200 VP----------------LLPSVRK----AILEYYD-----LCPFDLNLNIQLPLFRGIR 234
           VP                L P  R     A++         L P    L +Q  L R +R
Sbjct: 213 VPCDNVMAELARFRQLVGLSPEPRATDTMAVVPAMAGGRQRLAPLTDTLALQRRLSRPVR 272

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPL-------------STTAHTLRHSFATHLLSNGGDLR 281
            +    G++   +RQ+     + L             + + H LRHS ATHLL  G  + 
Sbjct: 273 TRQ---GLYT-IVRQVFEAAAVRLEASGYAEGAANLRAASTHWLRHSHATHLLRAGVPVT 328

Query: 282 SIQSILGHFRLSTTQIYTN 300
            +Q  L H  ++TT+ YT+
Sbjct: 329 DVQRTLRHRDINTTRRYTH 347


>gi|45358019|ref|NP_987576.1| Phage integrase [Methanococcus maripaludis S2]
 gi|44920776|emb|CAF30012.1| Phage integrase [Methanococcus maripaludis S2]
          Length = 182

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 75/167 (44%), Gaps = 18/167 (10%)

Query: 152 IDARNSAILY-LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKA 209
           +D++   + + +LYG  LR+SE L++  +NI  ++   ++   K +  +I  +   + + 
Sbjct: 22  VDSKEHKLFFKMLYGMALRVSELLTIEVKNINLNEGVCKLLDTKTENFQICVIPEWLNED 81

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           I  +      D NL     LF+  + +     + ++Y +  +    +    + HT R S 
Sbjct: 82  IFGH----IVDNNLKDDDRLFK-FKNRTYAWELVKKYTKDAK----IHKEFSTHTFRRSR 132

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-------GGDW 309
           A HLL++G  L  +   L H  ++TT  Y  +   +        GDW
Sbjct: 133 ALHLLNDGVPLEKVSKYLRHKSINTTMHYLKITVDDIKKELVKIGDW 179


>gi|292557929|gb|ADE30930.1| putative transposon integrase, Tn916 ORF3-like protein
           [Streptococcus suis GZ1]
          Length = 432

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 77/188 (40%), Gaps = 47/188 (25%)

Query: 159 ILYLLYGCGLRISEALSLT------PQNIMDDQSTL-----RIQGKGDKI---------- 197
           +  ++ G GLR+ E   L        + I+D   TL     R +G               
Sbjct: 222 VFAVMIGTGLRVGEVTGLRWCDIDLEEGIIDVNHTLVYYDHRTEGSKRGCYFNVNTTKTP 281

Query: 198 ---RIVPLLPSVRKAIL------EYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
              R VP+L  V++A L      E  DL C   ++      +F    G+P +     + I
Sbjct: 282 AGRRKVPMLGFVKEAFLMEKERQELLDLHCEATVDGYTDF-IFINRFGQPQHQATLNKAI 340

Query: 248 RQLRRYLG-------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           R++ R                LP   + H+LRH+F T +   G +++ IQ  LGH  +ST
Sbjct: 341 RRIIRDCNDEQLLKDENAEVLLP-HFSCHSLRHTFTTRMCEAGVNVKVIQDTLGHKDIST 399

Query: 295 T-QIYTNV 301
           T  IYT+V
Sbjct: 400 TLNIYTDV 407


>gi|262384922|ref|ZP_06078045.1| integrase/site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|262293444|gb|EEY81389.1| integrase/site-specific recombinase [Bacteroides sp. 2_1_33B]
          Length = 113

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           F R ++ L+   G+    T++T+RHSFA  L      +  I  +LGH  + TTQIY
Sbjct: 30  FNRNLKTLKEVAGIASDVTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIY 85


>gi|260909874|ref|ZP_05916564.1| mobilizable transposon protein [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260636006|gb|EEX54006.1| mobilizable transposon protein [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 57

 Score = 43.5 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 4/56 (7%)

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++ G  +  + +  RHSFA ++L+NG +++++ S+LGH RL     YT  N+  GG
Sbjct: 6   KHPGANIHISWYCARHSFAVNILNNGANIKTVASLLGHGRLK----YTQRNTSCGG 57


>gi|302523723|ref|ZP_07276065.1| predicted protein [Streptomyces sp. AA4]
 gi|302432618|gb|EFL04434.1| predicted protein [Streptomyces sp. AA4]
          Length = 397

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 97/231 (41%), Gaps = 23/231 (9%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +G  + K + + +   L    +      +   + R + KS   PRAL+ ++    +  V 
Sbjct: 138 VGPSTAKTARTALSGMLGLAARYDAVDSNPTRDTRRIPKSKKKPRALDAEERAKWLARV- 196

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI------MD-DQSTLRIQGKG- 194
              + + +  D  +  +   +   G+R+ EAL+   ++I      +D   + +R++G+G 
Sbjct: 197 -EANEKARRWDLPD--LSRFMMAAGVRVGEALATYWEDIDFVAGTVDVTHTVVRVKGEGL 253

Query: 195 ---------DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
                      +R +PL PS   A+L+           ++  P+F    G   +P    R
Sbjct: 254 LRKPRPKTESSLRALPL-PSWALALLKRRWAEARKDGRSLASPVFASTVGGLRDPNNVLR 312

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            IR++R      +  T+H  R + AT L   G   R I   LGH R+S TQ
Sbjct: 313 VIREIRGGDDF-IWLTSHNFRKTTATALDDAGIPTRLISDHLGHSRVSMTQ 362


>gi|163939178|ref|YP_001644062.1| integrase family protein [Bacillus weihenstephanensis KBAB4]
 gi|163861375|gb|ABY42434.1| integrase family protein [Bacillus weihenstephanensis KBAB4]
          Length = 370

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 87/215 (40%), Gaps = 44/215 (20%)

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI-----DARNSAILYLLYGCGLRIS 171
           +N+     LP+A  +K+ LT+ +       HE ++      D+R S + ++    G+R  
Sbjct: 154 KNVAAKTKLPKA--DKEELTVWN------EHEVQFFLKAAQDSRYSIVFHMALVTGMREG 205

Query: 172 EALSL-------------TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           E L                 Q +  D  T  + GK        LLP+   A L+ +    
Sbjct: 206 ELLGFRWKDVDLEKGHLTISQTLSHDGKTFLLGGKTKSSLRKILLPASTVAKLKKHRAVV 265

Query: 219 F-----------DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                       D +L +  P      G P+NP   +R +  L + + +P     H LRH
Sbjct: 266 LKEKLSQGEEYQDNDLVMCTP-----SGTPINPANVRRSLNALIKKVAVP-KIRFHDLRH 319

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           + AT LL+ G +++ I   LGH  +  T   Y++V
Sbjct: 320 THATLLLAKGVNVKVISERLGHSNIKITLDTYSHV 354


>gi|313157598|gb|EFR57014.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 405

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 19/154 (12%)

Query: 167 GLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPFDLN 222
           GL  ++A +L  ++I  DD  T  I    +K  +   VPLLP   K + +Y      + N
Sbjct: 258 GLAFTDADNLQKRHITTDDSGTTWIHKPREKTSVISRVPLLPYPLKILQKY------EHN 311

Query: 223 LNIQLPLFRGIRGKPLNPGVFQR---YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
             +QL      +GK L     Q+   Y++++     +  + T H  RH+FAT  +  G  
Sbjct: 312 PELQL------KGKLLPIPSNQKMNSYLKEIGTICNIHKNLTTHCARHTFATLAIEYGMP 365

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +  I  ILGH   + T+ Y  ++  N    M  I
Sbjct: 366 IDIIAKILGHTNTNMTRHYAKISEANISREMQRI 399


>gi|260439192|ref|ZP_05793008.1| putative phage integrase [Butyrivibrio crossotus DSM 2876]
 gi|292808362|gb|EFF67567.1| putative phage integrase [Butyrivibrio crossotus DSM 2876]
          Length = 432

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 25/33 (75%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           HTLRH++ T+LLSNG   + +Q +LGH  +STT
Sbjct: 374 HTLRHTYTTNLLSNGAQPKDVQELLGHSDVSTT 406


>gi|189461433|ref|ZP_03010218.1| hypothetical protein BACCOP_02089 [Bacteroides coprocola DSM 17136]
 gi|189431962|gb|EDV00947.1| hypothetical protein BACCOP_02089 [Bacteroides coprocola DSM 17136]
          Length = 382

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 33/58 (56%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           G   + ++ L   LG+  + T +  RHSFA+ L  +G ++  I   LGH  L+TTQIY
Sbjct: 308 GKVNKNLKLLASQLGVEANMTTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIY 365


>gi|301309060|ref|ZP_07215005.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300833086|gb|EFK63711.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 310

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           F R ++ L+   G+    T++T+RHSFA  L      +  I  +LGH  + TTQIY
Sbjct: 227 FNRNLKTLKEVAGITSDVTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIY 282


>gi|260170948|ref|ZP_05757360.1| transposase [Bacteroides sp. D2]
 gi|315919270|ref|ZP_07915510.1| transposase [Bacteroides sp. D2]
 gi|317475129|ref|ZP_07934397.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|313693145|gb|EFS29980.1| transposase [Bacteroides sp. D2]
 gi|316908773|gb|EFV30459.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 410

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQI 297
           N G   + ++ + R  G  +  T H  RH+ AT  LLS+G  + ++  +LGH  + TTQI
Sbjct: 320 NNGSCNKILKDIGRQCGFKVRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQI 379

Query: 298 YTNVNSK 304
           Y  + ++
Sbjct: 380 YAKITAQ 386


>gi|218203973|ref|YP_002364826.1| integrase family protein [Cyanothece sp. PCC 8801]
 gi|218169724|gb|ACK68459.1| integrase family protein [Cyanothece sp. PCC 8801]
          Length = 362

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 10/62 (16%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           FQ+  RQL          +AH+LRH+  T  +  G DLR +Q +LGH    TT +Y +V 
Sbjct: 296 FQQPERQL----------SAHSLRHTAGTLAIRAGSDLRQVQDLLGHADPRTTALYAHVA 345

Query: 303 SK 304
            +
Sbjct: 346 DR 347


>gi|152973526|ref|YP_001338577.1| integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|324120112|ref|YP_004249873.1| integrase [Klebsiella pneumoniae]
 gi|329996380|ref|ZP_08302453.1| site-specific recombinase, phage integrase family [Klebsiella sp.
           MS 92-3]
 gi|150958318|gb|ABR80347.1| integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|323388240|gb|ADX60389.1| integrase [Klebsiella pneumoniae]
 gi|328539420|gb|EGF65431.1| site-specific recombinase, phage integrase family [Klebsiella sp.
           MS 92-3]
          Length = 246

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 36/171 (21%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRI----------QGKGDKIRIV 200
           D R+  +   ++  G+RI EA +LTP++   D  +  +R+          +   D++R+V
Sbjct: 59  DQRHHMLFATMWNTGIRIGEARTLTPESFDLDGLRPFVRVLSEKVRARRGRPPKDEVRLV 118

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP---GVFQRYIRQLRR----- 252
           PL  +             F   +   +   R  R +PL P      + +++Q  +     
Sbjct: 119 PLTDAS------------FVRQMESWMVTTRPRRREPLWPVTDETMRNWLKQAVKRAEAD 166

Query: 253 --YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             +  +P+  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 167 GVHFSIPV--TPHTFRHSYIMHMLYHRQPRKVIQALAGHKDPRSMEVYTRV 215


>gi|67923785|ref|ZP_00517248.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera
           watsonii WH 8501]
 gi|67854373|gb|EAM49669.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera
           watsonii WH 8501]
          Length = 362

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 10/62 (16%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           FQ+  RQL          +AH+LRH+  T  +  G DLR +Q +LGH    TT +Y +V 
Sbjct: 296 FQQPQRQL----------SAHSLRHTAGTLAIRAGSDLRQVQDLLGHADPRTTALYAHVA 345

Query: 303 SK 304
            +
Sbjct: 346 DR 347


>gi|329965392|ref|ZP_08302316.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328522184|gb|EGF49298.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 410

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 17/161 (10%)

Query: 167 GLRISEALSLTPQNIM--DDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           GL  ++   L  ++I+  DD      + + K D +  +PLL  + + ILE Y   P    
Sbjct: 259 GLAFTDVKHLKAEHIVQADDGRWWIRKAREKTDNMCDIPLL-DIPRLILEKYKSRPGYSE 317

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
               LP+       P N  +   Y++++     +    + H  RH+FA+  ++N   L S
Sbjct: 318 RGFLLPV-------PSNQRM-NGYLKEIADICHIKKKLSTHIARHTFASLAIANKVSLES 369

Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ----THP 319
           I  +LGH  + TT+IY  + +      M  + D+    THP
Sbjct: 370 IAKMLGHTDIRTTRIYAKIMNSTIAFEMQTLQDKFALPTHP 410


>gi|323970608|gb|EGB65867.1| phage integrase [Escherichia coli TA007]
          Length = 366

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 76/159 (47%), Gaps = 17/159 (10%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSVRKAILEYYD 215
           +L  L   G+R ++   +  ++I +D++ + +Q +G K R    VP++ S+R ++    +
Sbjct: 158 VLDTLRFTGMRFNQLKHIRLKDIHEDEAVITLQLEGSKTRREWRVPIVESLRLSLKHLIE 217

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQ-----------RYIRQLRRYLGLPLSTTAHT 264
               +   +        +  +  +PG +Q            + R+L R  G  +S+  H 
Sbjct: 218 CARVNGASDNDYLFDVCLYSEHYSPGKYQYCAKRAHQSVKSFFRRLSRECGFFVSS--HR 275

Query: 265 LRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVN 302
            RH+ AT L++    +L  ++SILGH  ++TT  Y + +
Sbjct: 276 FRHTLATKLMAAPERNLHMVKSILGHRSVATTMEYIDFS 314


>gi|301312507|ref|ZP_07218412.1| integrase [Bacteroides sp. 20_3]
 gi|300829507|gb|EFK60172.1| integrase [Bacteroides sp. 20_3]
          Length = 80

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 31/52 (59%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           ++ L R  G+ L  T++T+RHSFA+ L      +  I  +LGH  + TTQIY
Sbjct: 1   MKLLARSTGVTLPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIY 52


>gi|300214620|gb|ADJ79036.1| DNA integration/recombination/inversion protein [Lactobacillus
           salivarius CECT 5713]
          Length = 305

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 21/151 (13%)

Query: 159 ILYLLYGCGLRISEALSLTPQN------IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           ++ L+   GLR  EAL LT ++      I++   T   +      +      S+RK  L+
Sbjct: 138 LILLVAKTGLRFGEALGLTKEDFDFENQIINISKTWDYKAARGGFKSTKNKSSIRKVQLD 197

Query: 213 YYDLCPFDLNLNIQL-------PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           +  LC   +  N  L       P+F  ++ +  N  V  R ++Q    L +P+  + H L
Sbjct: 198 W-KLC---MQFNTLLRDFPNGTPIF--VKKRVFNSTVNNR-LKQYCEELAIPI-ISIHGL 249

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           RH+ A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 250 RHTHASMLLFAGVSIASVAKRLGHADMTTTQ 280


>gi|255014213|ref|ZP_05286339.1| transposase [Bacteroides sp. 2_1_7]
          Length = 415

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNV-NSK 304
           +++L R  G  +  T H  RH+ AT  LLS+G  + ++  +LGH  L TTQIY  + N K
Sbjct: 333 LKELGRQCGFKIRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQK 392

Query: 305 NGGDWMMEI 313
              D  MEI
Sbjct: 393 ISSD--MEI 399


>gi|218133017|ref|ZP_03461821.1| hypothetical protein BACPEC_00878 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991890|gb|EEC57894.1| hypothetical protein BACPEC_00878 [Bacteroides pectinophilus ATCC
           43243]
          Length = 432

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 25/33 (75%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           HTLRH++ T+LLSNG   + +Q +LGH  +STT
Sbjct: 374 HTLRHTYTTNLLSNGAQPKDVQELLGHSDVSTT 406


>gi|149923432|ref|ZP_01911836.1| putative integrase [Plesiocystis pacifica SIR-1]
 gi|149815684|gb|EDM75211.1| putative integrase [Plesiocystis pacifica SIR-1]
          Length = 81

 Score = 43.5 bits (101), Expect = 0.047,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 3/57 (5%)

Query: 247 IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +R++ +  GL P+S   H LRHSFA+HL   G  ++ IQ +LGH  +  T  Y +++
Sbjct: 5   LRRVCKRAGLRPVSV--HVLRHSFASHLAMRGASIKVIQELLGHSDIKVTMRYAHLS 59


>gi|90961894|ref|YP_535810.1| DNA integration/recombination/inversion protein [Lactobacillus
           salivarius UCC118]
 gi|90821088|gb|ABD99727.1| DNA integration/recombination/inversion protein [Lactobacillus
           salivarius UCC118]
          Length = 305

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 21/151 (13%)

Query: 159 ILYLLYGCGLRISEALSLTPQN------IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           ++ L+   GLR  EAL LT ++      I++   T   +      +      S+RK  L+
Sbjct: 138 LILLVAKTGLRFGEALGLTKEDFDFENQIINISKTWDYKAARGGFKSTKNKSSIRKVQLD 197

Query: 213 YYDLCPFDLNLNIQL-------PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           +  LC   +  N  L       P+F  ++ +  N  V  R ++Q    L +P+  + H L
Sbjct: 198 W-KLC---MQFNTLLRDFPDGTPIF--VKKRVFNSTVNNR-LKQYCEELAIPI-ISIHGL 249

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           RH+ A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 250 RHTHASMLLFAGVSIASVAKRLGHADMTTTQ 280


>gi|116514048|ref|YP_812954.1| site-specific tyrosine recombinase XerS [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|116093363|gb|ABJ58516.1| Site-specific recombinase XerD [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 349

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 8/155 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL----LPSVRKAI 210
           R+ A++ L+ G G+R+SE   +  +++   ++TL I  KG +   VP+    LP + K +
Sbjct: 189 RDMAVIALILGTGIRVSECAGVDMKDLNLKEATLDITRKGGQRDSVPVADWTLPYLEKYL 248

Query: 211 LEYYDLCPFDLNLNIQLPLFR-GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
               D        N    L R     + +     ++ + +     G PL  T H LRH+ 
Sbjct: 249 AIRADRYKAPAT-NKAFFLTRYHQECRRMTTNAIEKMVGKYSAAFGHPL--TPHKLRHTV 305

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           A+ L     D   +   LG    S T +YT+V+ +
Sbjct: 306 ASELYQATKDQVMVAQQLGQKGTSATDLYTHVDQR 340


>gi|295116277|emb|CBL37124.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1]
          Length = 275

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 2/83 (2%)

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R + + P   QR  + L +  G+      H+LRHSFA+  + NG D +++  ILGH  + 
Sbjct: 192 RAQFMEPRGVQRRFKNLLKKCGIE-PVNIHSLRHSFASKWIENGFDSKALSEILGHSSVK 250

Query: 294 -TTQIYTNVNSKNGGDWMMEIYD 315
            T  IY + + +    +M  + D
Sbjct: 251 ITMDIYVHSSMRQKKSYMDRVLD 273


>gi|225685340|ref|YP_002729740.1| putative integrase/recombinase [Persephonella marina EX-H1]
 gi|225646760|gb|ACO04945.1| putative integrase/recombinase [Persephonella marina EX-H1]
          Length = 299

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 80/170 (47%), Gaps = 28/170 (16%)

Query: 156 NSAILYL---LYGCGLRISEALSLTPQNIMDDQSTLRIQ-----GKGDKIRIVPLL--PS 205
           N    YL   LYG GLR+SEA+ L P +I++ ++ + ++      K +K R  PL+    
Sbjct: 130 NKVYYYLTLTLYGFGLRVSEAVQLLPDDIIEKENQIFVRVRPEISKFNKSREAPLILKGE 189

Query: 206 VRKAILEYY---------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R   +++          D   F    ++Q  +        L+    + Y   L + LG+
Sbjct: 190 YRDDFIDFIVKRKHPKLKDKTLFTYYNDVQKKII------TLDRHNVKSYFHLLSKDLGI 243

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKN 305
            +  TAH  R ++ +++++ G    ++   +GH  ++TT + YT + +K+
Sbjct: 244 NI--TAHRFRDTYISYMVAKGIKPITVSKWVGHKDVNTTLKYYTKLTTKD 291


>gi|225388779|ref|ZP_03758503.1| hypothetical protein CLOSTASPAR_02515 [Clostridium asparagiforme
           DSM 15981]
 gi|225045161|gb|EEG55407.1| hypothetical protein CLOSTASPAR_02515 [Clostridium asparagiforme
           DSM 15981]
          Length = 285

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 9/146 (6%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R S +L  +   G+R+SE   +T + +    + +  +GK    R    LP   + ++  Y
Sbjct: 129 RLSLVLQTICATGIRVSELRFITAEAVEKGYAQVDCKGK----RRTVFLPEKLRRLIGIY 184

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHL 273
                         +F    G+PL+     R ++ L    G+ P     H LRH FA   
Sbjct: 185 ----MKKQKKTAGAVFITRSGRPLDRSNIWRDMKALCERAGVEPGKVFPHNLRHLFARTY 240

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYT 299
                DL  +  ILGH  +STT+IYT
Sbjct: 241 YMLEKDLSRLADILGHTNVSTTRIYT 266


>gi|187935362|ref|YP_001884797.1| phage integrase family protein [Clostridium botulinum B str. Eklund
           17B]
 gi|187723515|gb|ACD24736.1| phage integrase family protein [Clostridium botulinum B str. Eklund
           17B]
          Length = 385

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 2/65 (3%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
           +Y+ ++  Y  L +    H+LRH+ AT LL  G +++ IQ  LGH +L+TT  +Y++V  
Sbjct: 307 KYLSKVVNY-ELGIDFKFHSLRHTHATMLLEAGANIKDIQQRLGHSKLATTMDVYSHVTK 365

Query: 304 KNGGD 308
           K   D
Sbjct: 366 KMSQD 370


>gi|301310582|ref|ZP_07216521.1| integrase [Bacteroides sp. 20_3]
 gi|300832156|gb|EFK62787.1| integrase [Bacteroides sp. 20_3]
          Length = 415

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNV-NSK 304
           +++L R  G  +  T H  RH+ AT  LLS+G  + ++  +LGH  L TTQIY  + N K
Sbjct: 333 LKELGRQCGFKIRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQK 392

Query: 305 NGGDWMMEI 313
              D  MEI
Sbjct: 393 ISSD--MEI 399


>gi|294023683|ref|YP_003547002.1| invertase/recombinase like protein [Sphingobium japonicum UT26S]
 gi|292677463|dbj|BAI98979.1| invertase/recombinase like protein [Sphingobium japonicum UT26S]
          Length = 320

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 98/225 (43%), Gaps = 22/225 (9%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR--ALNEKQALTLVD--NVL 142
           S+K+ L+G++    +L    I   +   ++R    S    +   L   +A  L+D  +V+
Sbjct: 88  SVKQQLAGVRHLFDWLVTGHIVPVNPAGSVRGPAHSQRRGKTPVLAPDEARRLLDSIDVI 147

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL--RIQGKGDKIRIV 200
            H          R+ A++ L+     RI  AL++  +++      L  R+  KG K   +
Sbjct: 148 THAG-------LRDRALIGLMVYSFARIGAALAMRVEDVFMQNRRLWVRLHEKGGKRHEM 200

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RG-KPLN--PGVFQRYIRQLRRYLGL 256
           P   ++   +  Y D C  +L  + + PLFR I RG K L+  P         +RR  G 
Sbjct: 201 PCHHNLEDYLSAYIDGC--ELREDRKGPLFRTIARGTKRLSETPLPQANAFAMVRRRAGA 258

Query: 257 PLSTTA---HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
               TA   H+ R +  T  L NGG L +  ++  H    TTQ+Y
Sbjct: 259 AEIGTAIGNHSFRATGITTYLKNGGTLETAATMANHSSTRTTQLY 303


>gi|154491478|ref|ZP_02031104.1| hypothetical protein PARMER_01087 [Parabacteroides merdae ATCC
           43184]
 gi|154088467|gb|EDN87512.1| hypothetical protein PARMER_01087 [Parabacteroides merdae ATCC
           43184]
          Length = 415

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNV-NSK 304
           +++L R  G  +  T H  RH+ AT  LLS+G  + ++  +LGH  L TTQIY  + N K
Sbjct: 333 LKELGRQCGFKIRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQK 392

Query: 305 NGGDWMMEI 313
              D  MEI
Sbjct: 393 ISSD--MEI 399


>gi|191174384|ref|ZP_03035888.1| site-specific recombinase [Escherichia coli F11]
 gi|190905317|gb|EDV64952.1| site-specific recombinase [Escherichia coli F11]
          Length = 213

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 40/173 (23%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRI----------QGKGDKIRIV 200
           D R+  +   L+  G+RI EA  LTP++   D  +  +RI          +   D++R+V
Sbjct: 26  DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLV 85

Query: 201 PL--LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP---GVFQRYIRQLRR--- 252
           PL  +  VR+  +E + +              R  R +PL P      + +++Q  +   
Sbjct: 86  PLTDISYVRQ--MESWMIT------------TRPRRREPLWPVTDETMRNWLKQAVKRAE 131

Query: 253 ----YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               +  +P+  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 132 ADGVHFSIPV--TPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 182


>gi|332884958|gb|EGK05212.1| hypothetical protein HMPREF9456_02976 [Dysgonomonas mossii DSM
           22836]
          Length = 410

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 130/298 (43%), Gaps = 37/298 (12%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E Q ++ ++   R  SK T+Q+Y+     FL +L         I     +    I  +IS
Sbjct: 110 EMQKYINHVVYAR-RSKSTIQTYKQHLSYFLKYL-----NNNGIYDANLIKECHILKYIS 163

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK-QAL 135
            R      D+S   +L+ IK  L +  K  I  E    ++ +  K+  +P  + EK ++ 
Sbjct: 164 AR-----SDKS--NALAIIKRLLNFWYKNGIIQE----DVNDYLKNYHIP--IQEKIRSF 210

Query: 136 TLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QG 192
            L+D V  +  +      I  RN A+L L    GLR ++   L+  +I   ++ + I Q 
Sbjct: 211 YLIDEVKKIEQSVDRGSAIGRRNYAMLLLATRLGLRATDIARLSFSSIDWVKNEIVINQH 270

Query: 193 KGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQL----PLFRG---IRGKPLNPGVFQ 244
           K ++   +PLL  +  A++EY  +  P   +  I L    P       +    L   V Q
Sbjct: 271 KTEREVRLPLLTDIGNALIEYIKNGRPISESKQIFLVGHAPFIDASAKVISGALGTLVTQ 330

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             +    R+ G       H++RHS AT ++  G  +  I S+LGH   +TT  Y N++
Sbjct: 331 SGVSIGNRHHG------PHSMRHSLATTMMDCGTPIPVISSVLGHKSSNTTAKYINID 382


>gi|301299373|ref|ZP_07205654.1| site-specific recombinase, phage integrase family [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300853027|gb|EFK80630.1| site-specific recombinase, phage integrase family [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 305

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 21/151 (13%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD------KIRIVPLLPSVRKAILE 212
           ++ L+   GLR  EAL LT ++   +   + I    D        +      S+RK  L+
Sbjct: 138 LILLVAKTGLRFGEALGLTKEDFDFENQIINISKTWDYKAARGGFKSTKNKSSIRKVQLD 197

Query: 213 YYDLCPFDLNLNIQL-------PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           +  LC   +  N  L       P+F  ++ +  N  V  R ++Q    L +P+  + H L
Sbjct: 198 W-KLC---MQFNTLLRDFPDGTPIF--VKKRVFNSTVNNR-LKQYCEELAIPI-ISIHGL 249

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           RH+ A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 250 RHTHASMLLFAGVSIASVAKRLGHADMTTTQ 280


>gi|291521528|emb|CBK79821.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 583

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 95/216 (43%), Gaps = 22/216 (10%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--PRALNEKQALTLVDN 140
           +G ++   ++SGI+ F+K+L+ +    +        L+K   +   R++ E   + ++ N
Sbjct: 338 MGAKTFNTNVSGIQFFMKFLEVKGYIKKVPFYASYYLEKQIPVHHDRSVEEDVYMEIIQN 397

Query: 141 VLLHTSHETKWIDARNSAILYL-LYGCGLRISEALSLT--PQNIMDDQSTLRI-QGKGDK 196
           +     H           +++L L+  GLRISE  +L      I +    +++ Q K   
Sbjct: 398 LSQFPEH---------LRMMFLHLWCVGLRISEVCTLKGDAYYIQNGDCWMKVYQVKMKN 448

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            + VP+  ++ + +  Y    P +    I    FR  +G   +   F   +++    +G+
Sbjct: 449 YKRVPIPVTLYRLMQVYLKKHPTEKEAYI----FRNRKGGAFSKSTFMGQMKKYCSQIGI 504

Query: 257 ---PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
                   +H  RH+ AT+   +G  ++SI+  LGH
Sbjct: 505 QNGEYIFKSHDYRHTVATNFYEHGVSIQSIRDYLGH 540


>gi|312114222|ref|YP_004011818.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311219351|gb|ADP70719.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 393

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 9/157 (5%)

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
           + K +D    A + LL   G R+SE L+L    +   +  L +       +++PL     
Sbjct: 219 DDKTVDPYIIAAIRLLLLTGARLSEILTLRWTYVDTYRRILNLPDSKTGAKVIPL----N 274

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A L+     P  LN N  + + R + G+ L     Q+  R++R+  GL      H LRH
Sbjct: 275 QAALDLLGTLP-RLNSNPFVLVGR-VEGQHLV--NLQKPWRRIRKEAGLD-DVRIHDLRH 329

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           SFA+  +  GG L  I  +LGH + +TT  Y +V  K
Sbjct: 330 SFASVSVGLGGSLPVIGRVLGHSQPATTARYAHVADK 366


>gi|239907662|ref|YP_002954403.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239797528|dbj|BAH76517.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 352

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 103/242 (42%), Gaps = 30/242 (12%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           I ++ Y EI   + K         +  R LS +K+  ++  K+ +  E N L  R+ KK+
Sbjct: 116 IDEIRYDEILTIVGKAYADH-SPVTRGRYLSYLKTVFQFGVKQDLI-EKNPL--RHWKKA 171

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA-ILYLLYGCGLRI--SEALSLTPQ 179
              PR       LT+ D +      + K + A + A  + + +  G+R   SE  +L   
Sbjct: 172 KEHPRDTK----LTVADLM------KIKAVAAPHLAWAIEVAWNLGVRTGESELFALKWA 221

Query: 180 NIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           ++   QST+++   K    R++P+ P     + E       +  +           G+P+
Sbjct: 222 DVDWAQSTVKVFATKTQSARVIPISPEFMARLREMQGRAKTEYLIEYA--------GRPV 273

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH--FRLSTTQ 296
               F+   R   +   +P     + +RH FAT LL  GGDL ++  ++GH    ++  Q
Sbjct: 274 KQ--FRMSFRSACKRAEIPYHVVLYDIRHLFATTLLQEGGDLSAVSKLMGHSSVHMTANQ 331

Query: 297 IY 298
            Y
Sbjct: 332 YY 333


>gi|150009849|ref|YP_001304592.1| transposase [Parabacteroides distasonis ATCC 8503]
 gi|149938273|gb|ABR44970.1| transposase [Parabacteroides distasonis ATCC 8503]
          Length = 415

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNV-NSK 304
           +++L R  G  +  T H  RH+ AT  LLS+G  + ++  +LGH  L TTQIY  + N K
Sbjct: 333 LKELGRQCGFKIRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQK 392

Query: 305 NGGDWMMEI 313
              D  MEI
Sbjct: 393 ISSD--MEI 399


>gi|126668753|ref|ZP_01739702.1| putative integrase [Marinobacter sp. ELB17]
 gi|126626790|gb|EAZ97438.1| putative integrase [Marinobacter sp. ELB17]
          Length = 308

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 54/123 (43%), Gaps = 8/123 (6%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           LL   GLRI EAL+L   ++  ++  L I+G K  K R V + PS R+ +L+Y       
Sbjct: 135 LLAVTGLRIGEALALRRDDVDIEEGILTIRGAKFGKSRWVTIHPSTRQVLLDYAHRRDVH 194

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT------LRHSFATHLL 274
           L            RG  L P    R    L R  GL  + TAHT       RH FA   L
Sbjct: 195 LTTPHSPYFLVAERGGQLLPQYVYRVFWALSRQTGL-RAATAHTGPRLHDFRHRFAVATL 253

Query: 275 SNG 277
            +G
Sbjct: 254 LDG 256


>gi|225028560|ref|ZP_03717752.1| hypothetical protein EUBHAL_02839 [Eubacterium hallii DSM 3353]
 gi|224954126|gb|EEG35335.1| hypothetical protein EUBHAL_02839 [Eubacterium hallii DSM 3353]
          Length = 286

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 116/275 (42%), Gaps = 29/275 (10%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           IE   S+ T++ Y  D R+F  ++     +E IT + +  LSY   R+ I     ++   
Sbjct: 18  IEEEKSQATIEKYMRDVRKFFQYVEEMGKKEGITKEIV--LSYK--RSLI-----EEYAP 68

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            S+   L+ +  F K     +   +S  +  R  +      R L +++   L    L   
Sbjct: 69  SSVNSMLASLNHFFKVNHWYECIVKSLKIQQRTFRAKE---RELTKEEYYRL----LRAA 121

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
             E K+   R   IL  + G G+R+SE   +T + +   ++ + ++ K   I + P L  
Sbjct: 122 QKEGKY---RLYCILQTICGSGIRVSELKYITVKAVTRGRAVIFMKNKTRTILLPPKLCR 178

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHT 264
           + K      D C  +   +  + + R  RG P++       ++ L    G+       H 
Sbjct: 179 LLK------DYCKQEKITSGMIFITR--RGNPVDRSNILHEMKNLCGTAGVEREKVFPHN 230

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           LRH FA        D+  +  ILGH  ++TT+IYT
Sbjct: 231 LRHLFAYTYYKAEKDIAHLADILGHSSINTTRIYT 265


>gi|149916988|ref|ZP_01905489.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149822266|gb|EDM81657.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 421

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 68/164 (41%), Gaps = 17/164 (10%)

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQ-----------GKGDKIRIVPLLPSVRKAILEYY 214
            GLR+ E L+L  +++     TLR++            K  K R VPL   V +A+  + 
Sbjct: 216 TGLRVGELLALQWKHVRLAGRTLRVELSYTRAGGVSSPKSGKAREVPLTWDVARALEVHR 275

Query: 215 DLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           ++          L  P   G RG   + G F   I +  +          H LRH+FA+H
Sbjct: 276 EVLGAKARARDALVFPNADGERGSLRSVGHFVSRIAKAAKLR----HVHPHMLRHTFASH 331

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            +  G  +R +Q  LGH  +  T  Y ++    G D +  I  +
Sbjct: 332 AVMRGVPMRVVQEWLGHASIEMTMRYAHLAEGIGLDLIDRIAPE 375


>gi|104782062|ref|YP_608560.1| phage integrase family site specific recombinase [Pseudomonas
           entomophila L48]
 gi|95111049|emb|CAK15769.1| putative site-specific recombinase, phage integrase family
           [Pseudomonas entomophila L48]
          Length = 304

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 27/134 (20%), Positives = 68/134 (50%), Gaps = 4/134 (2%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            L    + A ++  RT      +    ++ ++  +    ++ +    ++L +R +K ++ 
Sbjct: 49  HLEPGHVIALVAALRTDGYAPNTSSLYVNAVRGVMNEAWRQGLVEHEHLLKIREIKPASG 108

Query: 125 --LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             LP   N ++  +L+  ++   + + +    R++AIL LLYG G+R SE++ +    + 
Sbjct: 109 SRLPAGRNLRR--SLIRELMDVCAADPRPQGVRDAAILALLYGTGMRKSESVDVNLDQVD 166

Query: 183 DDQSTLRIQGKGDK 196
            D+ ++++ GKG++
Sbjct: 167 FDERSVQVLGKGNR 180


>gi|312904161|ref|ZP_07763329.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|310632637|gb|EFQ15920.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
          Length = 408

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 33/173 (19%)

Query: 162 LLYGCGLRISEALSLTPQNI--------MDDQSTLRIQGKGDKI----------RIVPLL 203
           +++  GLR  E ++L   N          D Q   R +  G  I          R + + 
Sbjct: 218 IIFDLGLRKGEVMALRWFNFDFRDNILTFDKQRLYRKERPGQVILDDVKTDAGKRSLKMT 277

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLP--------LFRGIRGKPLNPGVFQRYI----RQLR 251
             VR ++LE Y +  +DL  N+ LP        LF   RGK +   + QR +     ++ 
Sbjct: 278 NRVRNSVLELYGIN-YDLTSNV-LPMTNSNQDFLFINHRGKNVGLPIRQRSVDTAWHRII 335

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +   LP     H  RH+ A  L   G  L  I+ +LGH  + TT+IY +V+++
Sbjct: 336 QKANLP-KIRIHDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVSAE 387


>gi|225872872|ref|YP_002754329.1| phage integrase family protein [Acidobacterium capsulatum ATCC
           51196]
 gi|225794498|gb|ACO34588.1| phage integrase family protein [Acidobacterium capsulatum ATCC
           51196]
          Length = 414

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 116/280 (41%), Gaps = 24/280 (8%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R L++ TL   E   R+   FLA+   E  T+  +R+L   ++RA  S R T + G  + 
Sbjct: 90  RNLAESTLSKLETIFRK--QFLAWTKSEGYTL--LREL---DLRAVQSFRATWRDGGLAK 142

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLK----KSNSLPRA-LNEKQALTLVDNVLL 143
           K+    +  F  +  +    T+S  LN++ +      ++  PR   NE    T   +  L
Sbjct: 143 KKKQERLTGFFWFCIRAGWITQSPTLNLKRITVQQMPTDYFPREEYNEIIDGTYRLDDGL 202

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
              ++ +    R  A++ LL   GLRI +A++L  + +  +   L  Q K      VP+ 
Sbjct: 203 ERGYDVEKRGQRIRALVQLLRWSGLRIRDAVTLERERLQSNDDLLLYQAKTG----VPVY 258

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTA 262
             +   + E     P     N +   + G  G P +    +QR  R+L    GL      
Sbjct: 259 VPLPHKVAEDLRNVPPGPKPNPRYFFWSG-NGDPKSAVADWQRAFRRLFEVAGLEKPDGG 317

Query: 263 ------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
                 H  R +FA  +L  G  +  +  +LGH  +  T+
Sbjct: 318 RKRCFPHMFRDTFAVEMLLAGVPIDQVSILLGHKSVKITE 357


>gi|110799530|ref|YP_696033.1| phage integrase family site specific recombinase [Clostridium
           perfringens ATCC 13124]
 gi|110674177|gb|ABG83164.1| site-specific recombinase, phage integrase family [Clostridium
           perfringens ATCC 13124]
          Length = 182

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 11/150 (7%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
           RN  +  L    GLRIS+ LSL  +++   D  ++R + K  K +I P+ P +++ I +Y
Sbjct: 26  RNYIMFILGINSGLRISDILSLRIRDVKGKDYISIR-EKKTGKQKIFPMTPILKREIKKY 84

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY--IRQLRRYLGLPLSTTAHTLRHSFAT 271
            D    D     Q  L +  +G     G  Q Y  +R     LGL  +   HTLR +F  
Sbjct: 85  CDEKDLD-----QF-LIKSKKGYNRPIGRKQAYTILRDAGETLGL-YNLGTHTLRKTFGY 137

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H      D+ ++Q I  H   S T  Y  V
Sbjct: 138 HFYMQYKDVVTLQKIFNHSDPSITLHYIGV 167


>gi|319777647|ref|YP_004137298.1| int [Mycoplasma fermentans M64]
 gi|318038722|gb|ADV34921.1| Int [Mycoplasma fermentans M64]
          Length = 363

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 91/208 (43%), Gaps = 28/208 (13%)

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
           +F+K+L +      +  L++ + KK     +A + ++ L + + V L       W D + 
Sbjct: 83  TFIKWLSEYTGVYINTKLDLDSFKKVGGTRQAYSMEEYLKIFNYVEL-------WGDLKF 135

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPL--------LPSVR 207
             I  +L   G+RI E  ++    ++ +  T RI+  K +  R+  +          ++R
Sbjct: 136 KLIFQILAITGVRIGELANVNWTLLVKNNFTQRIETEKKNNTRLFTIPKPETNHYFANLR 195

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + I++  D     LN+       + I+ K     +F+ Y+ +L    G+ +S  AH LRH
Sbjct: 196 QDIIDNIDFFKKGLNI-------KTIQNKF---NLFKHYVHELEPEWGIKIS--AHMLRH 243

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTT 295
            F  +   N G    +  ++GH    TT
Sbjct: 244 FFIVNAHLNIGRTEEVAKLVGHVNSQTT 271


>gi|253569479|ref|ZP_04846889.1| transposase [Bacteroides sp. 1_1_6]
 gi|251841498|gb|EES69579.1| transposase [Bacteroides sp. 1_1_6]
          Length = 415

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNV-NSK 304
           +++L R  G  +  T H  RH+ AT  LLS+G  + ++  +LGH  L TTQIY  + N K
Sbjct: 333 LKELGRQCGFKIRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQK 392

Query: 305 NGGDWMMEI 313
              D  MEI
Sbjct: 393 ISSD--MEI 399


>gi|254441509|ref|ZP_05055002.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198251587|gb|EDY75902.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 366

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 13/75 (17%)

Query: 239 NPGVFQ-----RYIRQLRRYLG-------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           NP +F      + +R++RR+         LP     H LRH+FA+ L+S G  L  I  +
Sbjct: 256 NPWLFPGETVGQPVREIRRFWARVQKEADLP-DVRIHDLRHTFASLLVSGGASLEMIGRL 314

Query: 287 LGHFRLSTTQIYTNV 301
           LGH ++ TTQ Y ++
Sbjct: 315 LGHSQMQTTQRYAHL 329


>gi|121583050|ref|YP_973491.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
 gi|120596312|gb|ABM39749.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
          Length = 609

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 136/333 (40%), Gaps = 64/333 (19%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+  Q+W+Q     R  S  T   Y+ +  + L++L +         T+ Q++  +  AF
Sbjct: 275 LQAVQSWIQ----ARAGSLATATLYQREAHRLLLWLQYECRGA----TLTQMTVADCGAF 326

Query: 75  -----------ISKRRTQ-----------KIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
                      IS+ R             ++   S ++++  I S   +L+   +   SN
Sbjct: 327 MVFLQHIPLRWISRARAAPGQSGWAPFRGQLSHASCRQTIVIIASMFAWLQS-ALYLSSN 385

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA--------ILYLLY 164
              + N    +   + + + +AL+  +  +L      ++IDA+  +        IL  + 
Sbjct: 386 PWVLVNQSTGDDPGKKMLDTKALS--EAAMLEV---LRFIDAQAPSPSRARIRFILLFVE 440

Query: 165 GCGLRISEALSLTPQNI-MDDQS-TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
             GLR +E LS T  ++ M+ +   +++ GKG K RI   +P      L+ Y L     +
Sbjct: 441 AVGLRSAELLSATLGDLRMEPEGWVMQVHGKGSKNRIA-AVPGQALHALQDYLLVRGLGS 499

Query: 223 LNIQLPLFRGIRGK--PLNPGVFQRYIRQLRRYLG-------LPL-------STTAHTLR 266
           +    P  R +     P+ P  +Q     +R +L        LP          T H LR
Sbjct: 500 IQAAPPTARLLASAVDPMAPVGYQALYEHVRGWLAKAVRASSLPANERERLAGATTHWLR 559

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRL-STTQIY 298
           H+F T  ++    L  IQ+ +GH  + +TT IY
Sbjct: 560 HTFGTRAIAREVPLDVIQAQMGHASIQTTTAIY 592


>gi|115352465|ref|YP_774304.1| phage integrase family protein [Burkholderia ambifaria AMMD]
 gi|115282453|gb|ABI87970.1| phage integrase family protein [Burkholderia ambifaria AMMD]
          Length = 358

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 20/172 (11%)

Query: 141 VLLHTSHETKWIDARNSA---------ILYLLYGCGLRISEALSLTPQNI-MDDQSTLRI 190
            +L  +    W+DA ++           + L+ G GLR SE ++   + + +  Q+    
Sbjct: 160 AILPVAMARAWLDAIDAGEGNRAGVRTAVRLMLGLGLRESETITARWEWLDVGRQTYTPG 219

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           + KG +   +P    V   +++Y        +     P+ +   G P   G  +  +   
Sbjct: 220 RTKGREADPIP----VPAWLIDY-----LMADWKAAGPILQKANGCPYPAGFTRSAMLAA 270

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            R +G P   TAH LR +FAT L   G  ++SIQ  L H  L+TT  Y  V+
Sbjct: 271 NRAVGAP-HITAHRLRGTFATLLSEAGVPVQSIQRALRHKNLTTTAAYLEVD 321


>gi|303235784|ref|ZP_07322391.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302484231|gb|EFL47219.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 432

 Score = 43.1 bits (100), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 66/142 (46%), Gaps = 16/142 (11%)

Query: 167 GLRISEALSLTPQNI---MDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           GL   +   LTP++I    D    +RI+  K D   I+PLLP  R+ IL+ Y     D  
Sbjct: 257 GLARVDMQRLTPKHIHRYKDGALEIRIKRQKTDVEAIIPLLPIARE-ILDLYIKDKQDDE 315

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLR 281
           L       R      +N G     I Q+ + L      T H  RH+F+T + LSNG  + 
Sbjct: 316 LIFPNLTVRKASFACVNIG----QICQIEKGL------TFHMARHTFSTTICLSNGISME 365

Query: 282 SIQSILGHFRLSTTQIYTNVNS 303
           ++  +LGH  + TTQIY  +  
Sbjct: 366 TLSKMLGHSDIGTTQIYGKITD 387


>gi|254884584|ref|ZP_05257294.1| transposase [Bacteroides sp. 4_3_47FAA]
 gi|254837377|gb|EET17686.1| transposase [Bacteroides sp. 4_3_47FAA]
          Length = 415

 Score = 43.1 bits (100), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNV-NSK 304
           +++L R  G  +  T H  RH+ AT  LLS+G  + ++  +LGH  L TTQIY  + N K
Sbjct: 333 LKELGRQCGFKIRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQK 392

Query: 305 NGGDWMMEI 313
              D  MEI
Sbjct: 393 ISSD--MEI 399


>gi|160942744|ref|ZP_02089985.1| hypothetical protein FAEPRAM212_00220 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445909|gb|EDP22912.1| hypothetical protein FAEPRAM212_00220 [Faecalibacterium prausnitzii
           M21/2]
          Length = 410

 Score = 43.1 bits (100), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSIL 287
           LFR   G P+ P V  ++ R  R           H LRHS AT+ LL +GGD +S+Q   
Sbjct: 270 LFRLPDGLPIAPDVLTKWYRMWRAEHPEFEKIVFHGLRHSSATYQLLQSGGDFKSVQGNT 329

Query: 288 GH 289
           GH
Sbjct: 330 GH 331


>gi|29346548|ref|NP_810051.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338444|gb|AAO76245.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 411

 Score = 43.1 bits (100), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNV-NSK 304
           +++L R  G  +  T H  RH+ AT  LLS+G  + ++  +LGH  L TTQIY  + N K
Sbjct: 329 LKELGRQCGFKIRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQK 388

Query: 305 NGGDWMMEI 313
              D  MEI
Sbjct: 389 ISSD--MEI 395


>gi|325297480|ref|YP_004257397.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317033|gb|ADY34924.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 416

 Score = 43.1 bits (100), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 20/144 (13%)

Query: 167 GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVRKAILEYYDLCPFDLN 222
           GL   + + L P +I    D +  +RI  K   +   +PL P + + IL+ Y+       
Sbjct: 251 GLAYVDIMLLHPHHIGTTADGRRYIRINRKKTNVEAFIPLHP-IAEQILDLYN------T 303

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRY--IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
            +   P+F      PL P   + +  I +L   +G   + + H  RHSF T L+S G  +
Sbjct: 304 TDDTKPVF------PL-PSRDEMWFEIHELGVAIGRKENLSYHQSRHSFGTFLISEGIPI 356

Query: 281 RSIQSILGHFRLSTTQIYTNVNSK 304
            SI  ++GH  + TTQ Y  V  K
Sbjct: 357 ESIAKMMGHSGIRTTQRYAEVTDK 380


>gi|307287810|ref|ZP_07567848.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0109]
 gi|306501198|gb|EFM70503.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0109]
          Length = 378

 Score = 43.1 bits (100), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 20/163 (12%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQG--------KGDKIRIVPLLPSVRKAILEY 213
            +Y  GLR  EA+SLT  + + ++  + + G        K     +   L S RK  L  
Sbjct: 202 FMYLTGLRAGEAISLTINDYVKNEHAILVNGTLDYSNGYKNATKELPKTLASFRKVELSN 261

Query: 214 YDLCPFD---LNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLG---LPLSTTA 262
             +   +   L   I+       LF G  GKP+    F   +++    LG   +  + ++
Sbjct: 262 RAVKIIEELILEREIKFKEQTNYLFVGKTGKPIQVNSFNASLKKANESLGKNKINKTISS 321

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
           H  RHS  + L      +++I   +GH    TT +IYT+V  K
Sbjct: 322 HIFRHSHISLLAELNVPVKAIMERVGHVDTETTLKIYTHVTKK 364


>gi|255015356|ref|ZP_05287482.1| putative bacteriophage integrase [Bacteroides sp. 2_1_7]
          Length = 389

 Score = 43.1 bits (100), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 248 RQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R+L+ +    G+  + T H  RH+ AT  LS G  + ++  +LGH ++STTQIY  V   
Sbjct: 316 RKLKHWCTLAGITKNVTFHVARHTAATLNLSLGVPIETVSKLLGHTKISTTQIYAKVIDA 375

Query: 305 N 305
           N
Sbjct: 376 N 376


>gi|121593736|ref|YP_985632.1| phage integrase family protein [Acidovorax sp. JS42]
 gi|120605816|gb|ABM41556.1| phage integrase family protein [Acidovorax sp. JS42]
          Length = 565

 Score = 43.1 bits (100), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 69/168 (41%), Gaps = 28/168 (16%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQ---STLRIQGKGDKIRIVPLLPSVRKAILEYY- 214
           +L   Y  GLRISE +      +  D    + + + GKG K   V +LP + +A L+ Y 
Sbjct: 385 MLDFAYATGLRISEFVGARLGAVDSDAHGDTWIGVVGKGHKAGKV-VLPPLARAALDRYL 443

Query: 215 -----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS---------- 259
                 + P     +  L    G  G  ++     R  R ++R+                
Sbjct: 444 VQRGLPVTPSKWRPSTPLIGSLGEDGSGIS---SWRLWRVMKRFFATAAEVVEEATPALA 500

Query: 260 -----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                 T H  RH+ ATHLL  G +L +++  L H  L+TT +Y + +
Sbjct: 501 EKLRLATPHWTRHTHATHLLEGGAELTTVRDNLRHASLATTSMYLHTD 548


>gi|317500130|ref|ZP_07958363.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316898419|gb|EFV20457.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 207

 Score = 43.1 bits (100), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 73/164 (44%), Gaps = 35/164 (21%)

Query: 162 LLYGCGLRISEALSLTPQNIMD----------DQSTLRIQGKG---------DKIRIVPL 202
           +L   GLRISE   LT   IMD          D   L+ + +G           IR VPL
Sbjct: 28  ILLKTGLRISELCGLT---IMDVDFIHEVVVIDHQLLKSKEQGYYIETPKTKSGIRQVPL 84

Query: 203 ----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP----GVFQRYIRQLRRYL 254
               + + ++ + ++    PF ++      LF   +GKP        +F R I++  ++ 
Sbjct: 85  SRETIQAFQRVMKKHPKAEPFVIDGRSNF-LFVNHKGKPKVAIDYNALFVRMIKKYNKHH 143

Query: 255 G---LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
               LP   T HTLRH+F T L S   + + +Q I+GH  +S T
Sbjct: 144 KDNPLP-HITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 186


>gi|293382367|ref|ZP_06628306.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis R712]
 gi|293389371|ref|ZP_06633829.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis S613]
 gi|312907391|ref|ZP_07766382.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|312910009|ref|ZP_07768856.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|291080312|gb|EFE17676.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis R712]
 gi|291081258|gb|EFE18221.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis S613]
 gi|310626419|gb|EFQ09702.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|311289282|gb|EFQ67838.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|315577567|gb|EFU89758.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0630]
          Length = 408

 Score = 43.1 bits (100), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 33/173 (19%)

Query: 162 LLYGCGLRISEALSLTPQNI--------MDDQSTLRIQGKGDKI----------RIVPLL 203
           +++  GLR  E ++L   N          D Q   R +  G  I          R + + 
Sbjct: 218 IIFDLGLRKGEVMALRWFNFDFRDNILTFDKQRLYRKERPGQVILDDVKTDAGKRSLKMT 277

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLP--------LFRGIRGKPLNPGVFQRYI----RQLR 251
             VR ++LE Y +  +DL  N+ LP        LF   RGK +   + QR +     ++ 
Sbjct: 278 NRVRNSVLELYGIN-YDLTSNV-LPMTNSNQDFLFINHRGKNVGLPIRQRSVDTAWHRII 335

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +   LP     H  RH+ A  L   G  L  I+ +LGH  + TT+IY +V+++
Sbjct: 336 QKANLP-KIRIHDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVSAE 387


>gi|254520505|ref|ZP_05132561.1| phage integrase [Clostridium sp. 7_2_43FAA]
 gi|226914254|gb|EEH99455.1| phage integrase [Clostridium sp. 7_2_43FAA]
          Length = 390

 Score = 43.1 bits (100), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 76/183 (41%), Gaps = 40/183 (21%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-----------IQGK-------- 193
           D +   +  L  G G+RI E ++L   +I  D+ TL+           I+GK        
Sbjct: 198 DHKYRLMFILALGTGIRIGELVALKWDDINFDECTLKVNKSISRSYIEIEGKRKFLLEET 257

Query: 194 -----------GDKIRIVPLLPSVRKAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLN 239
                      G    I+  L + RK   EY   Y     D N      +F    G+ + 
Sbjct: 258 TPKTRSSIREVGIPSNILKELINHRKEQDEYKDNYKEIYTDNNY-----VFTDALGRYIL 312

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIY 298
           P    +   ++ +   +P  T  H+LRH++AT L   G  L+++Q +LGH  +  T  IY
Sbjct: 313 PDTLSKAYLKVLKDNNIP-HTRFHSLRHTYATRLFEKGVPLKTVQKLLGHSSIKITADIY 371

Query: 299 TNV 301
           T+V
Sbjct: 372 THV 374


>gi|254441211|ref|ZP_05054704.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198251289|gb|EDY75604.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 384

 Score = 43.1 bits (100), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 102/247 (41%), Gaps = 39/247 (15%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           K+ I+ I +      R F+ KR    +   S+ R+ + + + + +  K      S+  N 
Sbjct: 137 KLPIENITRKDANTYRDFLLKR----VSPSSVARNKNTVNAVINWHTKENGLDTSSPFNG 192

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY-LLYGCGLRISEALS 175
             +K S       N+K  LT  D      S     + A  +  +Y LL   G+R+ E   
Sbjct: 193 LIIKGST---HTKNDKLPLTKQD-----VSQLNSQMSASTAKPIYILLRDTGMRVGEVAG 244

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           L   ++     TL I  K + IR +  L S R   L    L        + L  +R  +G
Sbjct: 245 LLVGDVSLQDKTLHI--KPNDIRTLKTLGSERTIPLSEASL--------VALQEYR--QG 292

Query: 236 KPLNPGVFQRY-------------IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
           K  N  +F +Y             ++Q R+ +  PL + AH+LRHS + +L + G D   
Sbjct: 293 KDHNDPIFPKYAKPNGNTNLSATLMKQFRKVITDPLKS-AHSLRHSISDNLRNTGCDSSL 351

Query: 283 IQSILGH 289
             +ILGH
Sbjct: 352 KDAILGH 358


>gi|323344149|ref|ZP_08084375.1| integrase [Prevotella oralis ATCC 33269]
 gi|323094878|gb|EFZ37453.1| integrase [Prevotella oralis ATCC 33269]
          Length = 407

 Score = 43.1 bits (100), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 17/145 (11%)

Query: 162 LLYGC--GLRISEALSLTPQNI--MD-DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
            L+ C  GL   +  +LTP NI  MD  Q  +  + K D    + LL  + K I++ Y+ 
Sbjct: 249 FLFSCFTGLAYVDVANLTPANIITMDGKQWIVTTRQKTDTPSHILLL-DIPKMIIKKYEG 307

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
              +  L   +P+    R           Y++++    G+  + T H  RH+  T  LS 
Sbjct: 308 KTKNDRL---IPILSNQR--------MNSYLKEIADVCGINKNLTFHMARHTSGTMSLSA 356

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNV 301
           G  + SI  ++GH  +++TQIY  V
Sbjct: 357 GIPIESIAKMIGHASIASTQIYAQV 381


>gi|307704864|ref|ZP_07641756.1| tyrosine recombinase xerD [Streptococcus mitis SK597]
 gi|307621577|gb|EFO00622.1| tyrosine recombinase xerD [Streptococcus mitis SK597]
          Length = 356

 Score = 43.1 bits (100), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 101/255 (39%), Gaps = 43/255 (16%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--------PRALNEK 132
           Q +   ++ R+LS + S  KYL +     +      RN+ K  S          RA N K
Sbjct: 99  QGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIK 158

Query: 133 QALTLVDNVLLHTSHETKWID-------------------ARNSAILYLLYGCGLRISEA 173
           Q L L D     T     +ID                    R+ AI+ LL   G+R+SEA
Sbjct: 159 QKLFLGD----ETEGFLTYIDQDYPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEA 214

Query: 174 LSLTPQNI---MDDQSTLRIQGKGDKIRIV----PLLPSVRKAILEYYDLCPFDLNLNIQ 226
           ++L  +++   M      R  GK D + +     P L +      + Y+    D+ L   
Sbjct: 215 VNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYNTEKTDIALF-- 272

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           L L+RG+  + ++    ++ + +        +  T H LRH+ AT L         +   
Sbjct: 273 LTLYRGVPNR-IDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQ 329

Query: 287 LGHFRLSTTQIYTNV 301
           LGH     T +YT++
Sbjct: 330 LGHASTQVTDLYTHI 344


>gi|295692999|ref|YP_003601609.1| tyrosine recombinase xerc [Lactobacillus crispatus ST1]
 gi|295031105|emb|CBL50584.1| Tyrosine recombinase xerC [Lactobacillus crispatus ST1]
          Length = 355

 Score = 43.1 bits (100), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 8/169 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI  L+ G G+R+SE   +   ++    + L +  KG +   VP+       I  Y 
Sbjct: 189 RDMAIAALILGTGIRVSECAGVDLSDLNLKDAVLDVTRKGGQKDSVPIAEWTLPYIKRYK 248

Query: 215 DLCPFDLNLNI-QLPLF----RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
            +     + +  Q+  F     G + + +     ++ I +     G PL  T H LRH+ 
Sbjct: 249 GIRNERYHADSKQVAFFLTQWHG-QTRRITTNAIEKMINKYSAAFGHPL--TPHKLRHTV 305

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           A+ L     D   +   LG    S T +YT+V+ K     + EI  + H
Sbjct: 306 ASELYEVTKDQVLVAQQLGQKGTSATDLYTHVDQKKQRAALNEISKENH 354


>gi|257422023|ref|ZP_05599013.1| predicted protein [Enterococcus faecalis X98]
 gi|257163847|gb|EEU93807.1| predicted protein [Enterococcus faecalis X98]
 gi|315157051|gb|EFU01068.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0043]
 gi|315157428|gb|EFU01445.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0312]
          Length = 378

 Score = 43.1 bits (100), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 20/163 (12%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-------KIRIVP-LLPSVRKAILEY 213
            +Y  GLR  EA+SLT  + + ++  + + G  D         + +P  L S RK  L  
Sbjct: 202 FMYLTGLRAGEAISLTINDYVKNEHAILVNGTLDYSNGYKNATKELPKTLASFRKVELSN 261

Query: 214 YDLCPFD---LNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLG---LPLSTTA 262
             +   +   L   I+       LF G  GKP+    F   +++    LG   +  + ++
Sbjct: 262 RAVKIIEELILEREIKFKEQTNYLFVGKTGKPIQVNSFNASLKKANESLGKNKINKTISS 321

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
           H  RHS  + L      +++I   +GH    TT +IYT+V  K
Sbjct: 322 HIFRHSHISLLAELNVPVKAIMERVGHVDTETTLKIYTHVTKK 364


>gi|228956429|ref|ZP_04118237.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|228803247|gb|EEM50058.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
          Length = 322

 Score = 43.1 bits (100), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 128/299 (42%), Gaps = 33/299 (11%)

Query: 16  KERQNWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEEK----ITIQTIRQLSY 68
           +E +N +++  IE+   G +  TL+ Y  D R  L  +  + E K    +T + IR LS 
Sbjct: 19  QENKNLVKDFLIEKKAQGKAASTLKQYGWDLRIILFLIHQHFENKNLTELTRKDIRNLSI 78

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILN-MRNLKKSNSLP 126
                 +S  R   +        +S ++S L++         E N+ + +R L K N + 
Sbjct: 79  IFQEMGMSNARVNGL--------MSALRSALEFCADDDDYEYEFNVGSRVRGLPK-NPIR 129

Query: 127 RA--LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
               +N+ Q   L+D +L     + K++ A     L L Y    R +E   +  + + + 
Sbjct: 130 EITFINDDQINWLIDELL----EKEKYMLA---TYLTLSYYSAARKNEVYQVQKEGLTEQ 182

Query: 185 QSTLRIQGK-GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
             T  ++GK G K R+    P V+K I  Y D    D   ++ + +++    + LN  VF
Sbjct: 183 YYTNVVRGKRGKKFRLY-YNPRVQKCIRLYIDQRGKDAIPDLFVRVYKNGERRQLNKSVF 241

Query: 244 QRYIRQLRRYL----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             + +   + L    G       H  RHS   +L   G  L  ++S+  H  +STT+ Y
Sbjct: 242 NYWCKIFAKMLNEKEGKEFKVNPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTESY 300


>gi|219853755|ref|YP_002470877.1| hypothetical protein CKR_0412 [Clostridium kluyveri NBRC 12016]
 gi|219567479|dbj|BAH05463.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 323

 Score = 43.1 bits (100), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 114/298 (38%), Gaps = 24/298 (8%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RGLS+ T+++Y    + F  FL          +    L    I +++   + + +   ++
Sbjct: 39  RGLSEDTIKTYYYHNKYFCEFLG-------KNKNCGGLDVKTIESYVLFLQEKGMKGTTI 91

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
              L  I   LKY  K+    E    N+  +K          E +      N LL     
Sbjct: 92  NSYLQNISPVLKYCMKKGYIFE--YFNIPYVKVQQEHKEIFTEDEL-----NTLLQPPKS 144

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVR 207
             ++  R    ++LL   GLR SE   L   N+ M D+       K  K R +P+  S+ 
Sbjct: 145 KDFVSIRVYTCVWLLASTGLRASELRHLKVNNLNMIDRIITCNYTKNKKARYLPISSSLY 204

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + +  Y +L   D     +  LF  + G  L+    Q+ I +     G+  S   H  RH
Sbjct: 205 EVLDNYLNLRKGDG----EDYLFPTVYGDILSRTSLQKGIVKYCHQRGIKKSGI-HIYRH 259

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           +F T  +        +++I GH        Y N    +    M+E+ D   P + +K+
Sbjct: 260 TFITRSVEKNVSPLILKNITGHATFKQLNNYYNSRMSS----MVEVIDNIAPQLNKKE 313


>gi|197302663|ref|ZP_03167717.1| hypothetical protein RUMLAC_01393 [Ruminococcus lactaris ATCC
           29176]
 gi|197298245|gb|EDY32791.1| hypothetical protein RUMLAC_01393 [Ruminococcus lactaris ATCC
           29176]
          Length = 377

 Score = 43.1 bits (100), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 24/163 (14%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
            D    ++L  L+  GLRI E  +L  ++I  +   L ++    +I+  P   S +K +L
Sbjct: 191 FDIYKFSVLIALF-TGLRIGEVCALQWKDISVESGLLTVRHTVQRIK-NPDSDSAKKTLL 248

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRG-------------------KPLNPGVFQRYIRQLRR 252
           +     P   +    LP+  G++                    + ++P   QR +++  +
Sbjct: 249 QLG--TPKTFSSARTLPVTNGLQKLFKLFQHDDPEAFILTGNHQFIDPRNLQRKLKKYTK 306

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            LG+      HTLRH+FAT  +  G D++ +  +LGH  +STT
Sbjct: 307 DLGIQ-DVHFHTLRHTFATRCIEFGCDIKILSEMLGHSNISTT 348


>gi|154502513|ref|ZP_02039573.1| hypothetical protein RUMGNA_00326 [Ruminococcus gnavus ATCC 29149]
 gi|153796909|gb|EDN79329.1| hypothetical protein RUMGNA_00326 [Ruminococcus gnavus ATCC 29149]
          Length = 420

 Score = 43.1 bits (100), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 91/206 (44%), Gaps = 53/206 (25%)

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +E + L  V N      H  ++ DA      Y+L+  GLRISE   LT +++   +  + 
Sbjct: 193 DETKFLDFVKN----DPHYNQYYDA-----FYILFKTGLRISEFCGLTVKDLDFKEDIIN 243

Query: 190 IQGKGDK----------------IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----- 228
           +  +  +                 R++P+   V++A L         +  N + P     
Sbjct: 244 VNHQLQRTREMKYIIVSTKTTSGTRLLPMEADVKEAFLR--------ILKNRRKPKREPM 295

Query: 229 -------LFRGIRGKPLNPGVFQRYIRQLR-RY-----LGLPLSTTAHTLRHSFATHLLS 275
                  LF    G+P+    +++Y++  R +Y     L LP   T H  RH++ T++ +
Sbjct: 296 VDGYGGFLFLDKNGRPMVALHWEKYMQHAREKYNRENLLQLP-PVTPHICRHTYCTNMAN 354

Query: 276 NGGDLRSIQSILGHFRLSTT-QIYTN 300
           +G + +++Q ++GH  +S T  IYT+
Sbjct: 355 SGMNPKTLQYLMGHSDVSVTLNIYTH 380


>gi|317477400|ref|ZP_07936631.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906494|gb|EFV28217.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 411

 Score = 43.1 bits (100), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNV-NSK 304
           +++L R  G  +  T H  RH+ AT  LLS+G  + ++  +LGH  L TTQIY  + N K
Sbjct: 329 LKELGRQCGFKIRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQK 388

Query: 305 NGGDWMMEI 313
              D  MEI
Sbjct: 389 ISSD--MEI 395


>gi|258592036|emb|CBE68341.1| Integrase/recombinase (E2 protein) (fragment) [NC10 bacterium
           'Dutch sediment']
          Length = 50

 Score = 43.1 bits (100), Expect = 0.052,   Method: Composition-based stats.
 Identities = 18/31 (58%), Positives = 24/31 (77%)

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           HSFATH L +G D+R++Q +LGH  +STT I
Sbjct: 16  HSFATHPLEDGYDIRTVQELLGHTDVSTTMI 46


>gi|288923736|ref|ZP_06417832.1| integrase family protein [Frankia sp. EUN1f]
 gi|288344916|gb|EFC79349.1| integrase family protein [Frankia sp. EUN1f]
          Length = 354

 Score = 43.1 bits (100), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 6/157 (3%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-SVRKAILE 212
           ARN  +L L Y   LR  E  SL   +I     TLR++ +  K R+  ++P S    +L 
Sbjct: 169 ARNRLMLALAYDAALRREELCSLRTDDIDPAHRTLRVRAETTKNRLERVVPYSASTGVLL 228

Query: 213 YYDLCPFDLNLNIQLPLF----RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
              L         + PLF    R    +PL+   + + +R++    G+   +T HT RH 
Sbjct: 229 SQYLAHRVSVSRARGPLFLSESRRNHAQPLSLWTWSKVVRRIALASGVERFST-HTTRHL 287

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             T L   G ++ +I +  GH    +T  Y +++ + 
Sbjct: 288 CLTDLARMGWEVHAIAAFAGHRHTDSTLRYIHLSGRE 324


>gi|229495696|ref|ZP_04389424.1| integrase [Porphyromonas endodontalis ATCC 35406]
 gi|229317270|gb|EEN83175.1| integrase [Porphyromonas endodontalis ATCC 35406]
          Length = 411

 Score = 43.1 bits (100), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 17/160 (10%)

Query: 163 LYGC--GLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRIVP--LLPSVRKAILEYYDLC 217
           ++ C  GL  ++  +LT  N+       L I  K  K  +    +L  + K I++ YD  
Sbjct: 251 VFCCFTGLSFTDMKNLTKDNLQTSFDGKLWIMTKRQKTGVESNIMLLDIPKQIIDKYDGM 310

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSN 276
             D   N+ LP+   I           + I+++    G+    T HT RH+ AT + L+N
Sbjct: 311 AKD---NLLLPVPTYITA--------CKNIKKIIGLCGIEKEITWHTSRHTMATEICLTN 359

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           G  + ++  +LGH  + TTQIY  +  +     M  + D+
Sbjct: 360 GVPIETLSKMLGHTNIRTTQIYAKITHEKESRDMAALSDK 399


>gi|212694523|ref|ZP_03302651.1| hypothetical protein BACDOR_04051 [Bacteroides dorei DSM 17855]
 gi|212663024|gb|EEB23598.1| hypothetical protein BACDOR_04051 [Bacteroides dorei DSM 17855]
          Length = 400

 Score = 43.1 bits (100), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNV-NSK 304
           +++L R  G  +  T H  RH+ AT  LLS+G  + ++  +LGH  L TTQIY  + N K
Sbjct: 318 LKELGRQCGFKIRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQK 377

Query: 305 NGGDWMMEI 313
              D  MEI
Sbjct: 378 ISSD--MEI 384


>gi|301067092|ref|YP_003789115.1| phage integrase:phage integrase, N-terminal SAM-like protein
           [Lactobacillus casei str. Zhang]
 gi|300439499|gb|ADK19265.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Lactobacillus casei str. Zhang]
          Length = 360

 Score = 43.1 bits (100), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 13/149 (8%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-----KIRIVPLLPSVRKAILEY 213
           I+Y+    GLR +E L LT ++I    + + +    D       +      SVR  +L+ 
Sbjct: 189 IIYIAAVTGLRYAEVLGLTERDIDFGHAEISVNKTWDYKYHTGFKKTKNTASVRTIVLDP 248

Query: 214 YDLCPFDLNLNIQLP------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             L      L +  P      +F      P++  +  + + Q    LGLP   T H LRH
Sbjct: 249 VSLSKLRHFLKVNSPQTSNTAIFAPDGHAPVSAEI-NKILTQKLESLGLP-RVTFHGLRH 306

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           + A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 307 THASILLYQGVSVLSVSKRLGHSNITTTQ 335


>gi|300788914|ref|YP_003769205.1| integrase family protein [Amycolatopsis mediterranei U32]
 gi|299798428|gb|ADJ48803.1| integrase family protein [Amycolatopsis mediterranei U32]
          Length = 545

 Score = 43.1 bits (100), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LF    G PL+P        +L +  GLP   T H LRH  AT  L  G D++ IQ +L 
Sbjct: 387 LFTEPDGNPLHPADVADEFARLIKLAGLP-PITLHGLRHGAATLALGAGVDMKVIQHMLR 445

Query: 289 HFRLSTT-QIYTN 300
           H  +  T  +YTN
Sbjct: 446 HSSIKVTMDLYTN 458


>gi|315029961|gb|EFT41893.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4000]
          Length = 408

 Score = 43.1 bits (100), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 72/170 (42%), Gaps = 33/170 (19%)

Query: 162 LLYGCGLRISEALSLTPQNI--------MDDQSTLRIQGKGDKI----------RIVPLL 203
           +++  GLR  E ++L   N          D Q   R +  G  I          R + + 
Sbjct: 218 IIFDLGLRKGEVMALRWFNFDFRDNILTFDKQRLYRKEQPGQVILDDVKTDAGKRSLKMT 277

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLP--------LFRGIRGKPLNPGVFQRYI----RQLR 251
             VR ++LE Y +  +DL  N+ LP        LF   RGK +   + QR +     ++ 
Sbjct: 278 NRVRNSVLELYSIN-YDLTSNV-LPMTNSNQDFLFINHRGKNVGLPIRQRSVDTAWHRII 335

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +   LP     H  RH+ A  L   G  L  I+ +LGH  + TT+IY +V
Sbjct: 336 QKANLP-KIRIHDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHV 384


>gi|238029078|ref|YP_002913303.1| Phage integrase family protein [Burkholderia glumae BGR1]
 gi|237880655|gb|ACR32983.1| Phage integrase family protein [Burkholderia glumae BGR1]
          Length = 608

 Score = 43.1 bits (100), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 27/45 (60%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           T+ H+LRH+F T  +++G  L  +Q +LGH  L TT +Y     +
Sbjct: 546 TSPHSLRHTFGTQSVASGMTLDVVQQLLGHASLQTTSVYVTAEQR 590


>gi|229826953|ref|ZP_04453022.1| hypothetical protein GCWU000182_02337 [Abiotrophia defectiva ATCC
           49176]
 gi|229788571|gb|EEP24685.1| hypothetical protein GCWU000182_02337 [Abiotrophia defectiva ATCC
           49176]
          Length = 70

 Score = 43.1 bits (100), Expect = 0.053,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 29/38 (76%)

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           RH+F THL  NG DL +I++++GH  L++T IY ++++
Sbjct: 14  RHAFGTHLYENGTDLLTIKALMGHKSLNSTTIYVHLSA 51


>gi|222097940|ref|YP_002531997.1| integrase/recombinase [Bacillus cereus Q1]
 gi|221241998|gb|ACM14708.1| integrase/recombinase [Bacillus cereus Q1]
          Length = 332

 Score = 43.1 bits (100), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 81/173 (46%), Gaps = 12/173 (6%)

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDK 196
           N+LL     T+++D R++  + L+Y  G+R+     L  +++  D   L + G   K  +
Sbjct: 150 NILLSVLDLTRFLDLRDATAILLMYQTGIRVGTLAQLEHKHVDLDAKVLNVDGGIIKNHE 209

Query: 197 IRIVP---LLPSVRKAILEYYDLCPFDLNL-NIQLPLFR---GIRGKPLNPGVFQRYIRQ 249
              +P   +L  +   +++  ++   + N+ N  L + +    +   P N  + +R  + 
Sbjct: 210 SIYLPFDDVLARLISVLMKQNEIIRREYNVKNDYLFITKSGGSVLTSPTNNIISKRMTKH 269

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            + Y GL  +   H +R  FA +LL  G ++  I   LGH  +S T  Y +++
Sbjct: 270 AKEY-GLK-NINPHAIRRGFAKNLLKKGANVALISKALGHSDISVTTRYLHLD 320


>gi|167758571|ref|ZP_02430698.1| hypothetical protein CLOSCI_00911 [Clostridium scindens ATCC 35704]
 gi|325662801|ref|ZP_08151370.1| hypothetical protein HMPREF0490_02110 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|167663767|gb|EDS07897.1| hypothetical protein CLOSCI_00911 [Clostridium scindens ATCC 35704]
 gi|325470853|gb|EGC74082.1| hypothetical protein HMPREF0490_02110 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 411

 Score = 43.1 bits (100), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 86/221 (38%), Gaps = 49/221 (22%)

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           R   K+  +  AL  +Q    ++ +  H  +   W       +  +L G G RI EAL L
Sbjct: 172 RESGKNRGIRHALTVEQQRAFMEYIANHPIYYHWW------PMFTVLLGTGCRIGEALGL 225

Query: 177 TPQNIMDDQSTLRI--------QGKGDK-------------IRIVPLLPSVRKAILEYYD 215
             Q++  D+ T+ I        + + +K             IR +P+L  V+ A    Y+
Sbjct: 226 RWQDLDYDKRTISINHSLSYYQKPESNKSVLRISKPKTEAGIRTIPMLDIVKDAFEMLYE 285

Query: 216 -------------------LCP-FDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYL 254
                               C  F +  N Q       R     N     R  ++ R  +
Sbjct: 286 EQLENGFNESEIDGMSGFIFCNRFGMVPNPQTVNHTIKRIANSYNADEVVRAKKERRDPI 345

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            LP + + H LRH+F T L  N  +L+ IQSI+GH  + TT
Sbjct: 346 ILP-NFSCHHLRHTFCTRLCENETNLKVIQSIMGHRNIETT 385


>gi|150008853|ref|YP_001303596.1| transposase [Parabacteroides distasonis ATCC 8503]
 gi|149937277|gb|ABR43974.1| transposase [Parabacteroides distasonis ATCC 8503]
          Length = 415

 Score = 43.1 bits (100), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNV-NSK 304
           +++L R  G  +  T H  RH+ AT  LLS+G  + ++  +LGH  L TTQIY  + N K
Sbjct: 333 LKELGRQCGFKIRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQK 392

Query: 305 NGGDWMMEI 313
              D  MEI
Sbjct: 393 ISSD--MEI 399


>gi|317473774|ref|ZP_07933055.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316910031|gb|EFV31704.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 408

 Score = 43.1 bits (100), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 33/58 (56%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           ++++ +  G+    + H  RH FAT  LS G  + S+  +LGH  + TTQ+Y  + ++
Sbjct: 328 LKKMIKECGIDKDISFHCSRHGFATLALSKGMPIESVSRVLGHTNIVTTQLYAKITTE 385


>gi|315173579|gb|EFU17596.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1346]
          Length = 378

 Score = 43.1 bits (100), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 20/163 (12%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-------KIRIVP-LLPSVRKAILEY 213
            +Y  GLR  EA+SLT  + + ++  + + G  D         + +P  L S RK  L  
Sbjct: 202 FMYLTGLRAGEAISLTINDYVKNEHAILVNGTLDYSSGYKNATKELPKTLASFRKVELSN 261

Query: 214 YDLCPFD---LNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLG---LPLSTTA 262
             +   +   L   I+       LF G  GKP+    F   +++    LG   +  + ++
Sbjct: 262 RAVKIIEELILEREIKFKEQTNYLFVGKTGKPIQVNSFNASLKKANESLGKNKINKTISS 321

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
           H  RHS  + L      +++I   +GH    TT +IYT+V  K
Sbjct: 322 HIFRHSHISLLAELNVPVKAIMERVGHVDTETTLKIYTHVTKK 364


>gi|282879690|ref|ZP_06288420.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281306359|gb|EFA98389.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
          Length = 430

 Score = 43.1 bits (100), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 9/152 (5%)

Query: 158 AILYLLYGC--GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVRKAIL 211
           A L  ++ C  GL IS+  +L  ++I    + Q  +R + +  K   IVPL P + +AI+
Sbjct: 238 ARLVFVFSCFTGLAISDMENLEYKHIQTAAEGQMYIRKERQKTKAEFIVPLHP-IAEAII 296

Query: 212 EYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
            +    P   ++   ++      +  +  +  V    +  + +  G+    + H  RH+F
Sbjct: 297 SHCQKEPERSEVQQTVKEKDDHLVFHRNCSRSVMDTKLSIVGKACGIRQRLSFHMARHTF 356

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T  LS G  + SI  ++GH  +S+TQ+Y  V
Sbjct: 357 GTMSLSAGIPIESIAKMMGHASISSTQVYAQV 388


>gi|262039897|ref|ZP_06013169.1| type 1 fimbriae regulatory protein FimB [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259042728|gb|EEW43727.1| type 1 fimbriae regulatory protein FimB [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 133

 Score = 43.1 bits (100), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 35/75 (46%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LF   +G PL+   F + I       GLPL    H LRHS    L + G D R IQ  LG
Sbjct: 39  LFLSRKGNPLSRQQFYQIIASSGGLAGLPLEIHPHMLRHSCGFALANMGIDTRLIQDYLG 98

Query: 289 HFRLSTTQIYTNVNS 303
           H  +  T  YT  N+
Sbjct: 99  HRNIRHTVWYTASNA 113


>gi|297559103|ref|YP_003678077.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296843551|gb|ADH65571.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 422

 Score = 43.1 bits (100), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 78/196 (39%), Gaps = 46/196 (23%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--------------GKGDKI 197
           + AR  A++    GCGLR  E L L   ++   + TL ++               KG K 
Sbjct: 197 LPARYQALVVPGAGCGLRQGEVLGLAVDDLSASKHTLHVRRQVKLMAGKPVFAPPKGGKE 256

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG-VFQRYIRQ------L 250
           R VPL   V  A+  + +  P    + + LP ++   GKP+    +F    R+      +
Sbjct: 257 REVPLPGHVLSALAAHMERFP---PVAVTLP-WKHFGGKPVTVSLIFTSRERKALNATYV 312

Query: 251 RRYLGLPLSTTA--------------------HTLRHSFATHLLSNGGDLRSIQSILGHF 290
             YL  P    A                    H LRH +A+ +L +G  +R++   LGH 
Sbjct: 313 NAYLWKPALVAAGVLPAPPAGERIQAAHDKGFHQLRHHYASVMLDSGVSVRALADFLGHH 372

Query: 291 RLS-TTQIYTNVNSKN 305
               T + Y ++  KN
Sbjct: 373 DPGFTLRTYAHMMPKN 388


>gi|154492102|ref|ZP_02031728.1| hypothetical protein PARMER_01733 [Parabacteroides merdae ATCC
           43184]
 gi|154087327|gb|EDN86372.1| hypothetical protein PARMER_01733 [Parabacteroides merdae ATCC
           43184]
          Length = 415

 Score = 43.1 bits (100), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNV-NSK 304
           +++L R  G  +  T H  RH+ AT  LLS+G  + ++  +LGH  L TTQIY  + N K
Sbjct: 333 LKELGRQCGFKIRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQK 392

Query: 305 NGGDWMMEI 313
              D  MEI
Sbjct: 393 ISSD--MEI 399


>gi|37679961|ref|NP_934570.1| integrase [Vibrio vulnificus YJ016]
 gi|37198707|dbj|BAC94541.1| integrase [Vibrio vulnificus YJ016]
          Length = 402

 Score = 43.1 bits (100), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 70/146 (47%), Gaps = 13/146 (8%)

Query: 159 ILYLLYGCGLRISEALSLTPQNI-MDDQS-TLRIQ-GKGDKIRIVPLLPSVRKAILEYYD 215
           ++ L    G+R  E LSL   +I M+D+  T+R +  K    R +PL  +V   +  +++
Sbjct: 254 LIVLALNTGMRKGEILSLKWSHINMEDRYLTIRSENAKSKNKRTIPLNNTVYTMLQAWHE 313

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
             P     + +L   R   GKPL+   +Q     L +  G+  +   H LRH FA+ L+ 
Sbjct: 314 QNP-----DTELVFERN--GKPLDS--YQYQWESLLKEAGIE-NFRFHDLRHHFASKLVM 363

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNV 301
              DL  ++ +LGH  L  T  Y ++
Sbjct: 364 KEADLNVVRELLGHADLKMTLRYAHL 389


>gi|288925981|ref|ZP_06419910.1| integrase [Prevotella buccae D17]
 gi|288337201|gb|EFC75558.1| integrase [Prevotella buccae D17]
          Length = 409

 Score = 43.1 bits (100), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYT 299
             +Q  ++ LR   G+    T HT RH+FAT + L  G  + ++  +LGH  LS T+ Y 
Sbjct: 325 STYQSCLKALRLRAGIAFPFTTHTARHTFATLITLEQGVPIETVSKMLGHTNLSMTERYA 384

Query: 300 NVN 302
            V 
Sbjct: 385 KVT 387


>gi|256839225|ref|ZP_05544735.1| integrase [Parabacteroides sp. D13]
 gi|256740144|gb|EEU53468.1| integrase [Parabacteroides sp. D13]
          Length = 310

 Score = 43.1 bits (100), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           F   +++L    G+    T++++RHSFAT L   G  +  I  +LGH  + TTQIY
Sbjct: 227 FNSSLKELANACGVTEMVTSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIY 282


>gi|167753997|ref|ZP_02426124.1| hypothetical protein ALIPUT_02283 [Alistipes putredinis DSM 17216]
 gi|167658622|gb|EDS02752.1| hypothetical protein ALIPUT_02283 [Alistipes putredinis DSM 17216]
          Length = 403

 Score = 43.1 bits (100), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 37/68 (54%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R ++ L   +GL +  T +  RH+FAT L  +G ++  I   LGH  LSTTQIY +    
Sbjct: 333 RELKTLGEQIGLEMPLTTYVARHTFATVLKRSGVNIAIISESLGHSDLSTTQIYLDSFEN 392

Query: 305 NGGDWMME 312
           +  D  M+
Sbjct: 393 SQIDAAMQ 400


>gi|150015786|ref|YP_001308040.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149902251|gb|ABR33084.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 201

 Score = 43.1 bits (100), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 69/139 (49%), Gaps = 14/139 (10%)

Query: 170 ISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQ 226
           I EAL  +   I +   +++  I+ K  K R V ++P V K + EY  D   ++      
Sbjct: 55  IREALRRSEFTIFEGKKKNSKNIREKNRKPRTVEVIPKVTKLLKEYIRDKKDYEY----- 109

Query: 227 LPLFRGIRG--KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSI 283
             +F+  +G  KP+        +++   Y GL    +AH++R ++A  + + +G D+ ++
Sbjct: 110 --IFQSRKGINKPIGVQAVSNILKEAGEYFGL-YDISAHSMRKTYAYKIYVESGKDIVAV 166

Query: 284 QSILGHFRLSTTQIYTNVN 302
           Q +LGH     T++Y  ++
Sbjct: 167 QKLLGHRTTQETELYIGLD 185


>gi|325687453|gb|EGD29474.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK72]
          Length = 356

 Score = 43.1 bits (100), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 115/305 (37%), Gaps = 68/305 (22%)

Query: 57  KITIQTIRQLSYTEIRAFISKRR---------TQK-IGDRSLKRSLSGIKSFLKYLKKRK 106
           +I +  +  +S  ++ AFI   R         TQ  +   ++ R+LS + S  KYL +  
Sbjct: 65  EIPLSVLENMSKKDMEAFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLYKYLTEEV 124

Query: 107 ITTESNILNMRNLKKSNSL--------PRALNEKQALTLVDNVLLHTSHETKWIDA---- 154
                     RN+ K  +          RA N KQ L L D     T    ++ID     
Sbjct: 125 ENEHGEPYFYRNVMKKVATKKKKETLAARAENIKQKLFLGD----ETEEFLQYIDTEYPK 180

Query: 155 ---------------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                          R+ AI+ LL   G+R+SEA++L  ++I      + +  KG K   
Sbjct: 181 KLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLKDINLKMMVIEVTRKGGKRDS 240

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-----------IRGKP--LNPGVFQRY 246
           V +    +  + EY         L+I++  ++             RG P  ++    ++ 
Sbjct: 241 VNVAAFAKPYLEEY---------LSIRIKRYKAEKTDTAFFLTEYRGTPNRIDASSVEKM 291

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV---NS 303
           + +        +  T H LRH+ AT L         +   LGH     T +YT++     
Sbjct: 292 VAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQ 349

Query: 304 KNGGD 308
           KN  D
Sbjct: 350 KNALD 354


>gi|227431825|ref|ZP_03913850.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227352415|gb|EEJ42616.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 373

 Score = 43.1 bits (100), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
           +++R +    G+ +  + H LRH++AT  +  G +++ +Q+ LGH  +S T  IY++V  
Sbjct: 299 KWLRSVSDKYGVAVGLSMHKLRHTWATLAIDQGANIKQVQTYLGHADVSMTLNIYSDVTK 358

Query: 304 K 304
           +
Sbjct: 359 R 359


>gi|315575528|gb|EFU87719.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309B]
 gi|315580031|gb|EFU92222.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309A]
          Length = 408

 Score = 43.1 bits (100), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 72/170 (42%), Gaps = 33/170 (19%)

Query: 162 LLYGCGLRISEALSLTPQNI--------MDDQSTLRIQGKGDKI----------RIVPLL 203
           +++  GLR  E ++L   N          D Q   R +  G  I          R + + 
Sbjct: 218 IIFDLGLRKGEVMALRWFNFDFRDNILTFDKQRLYRKEQPGQVILDDVKTDAGKRSLKMT 277

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLP--------LFRGIRGKPLNPGVFQRYI----RQLR 251
             VR ++LE Y +  +DL  N+ LP        LF   RGK +   + QR +     ++ 
Sbjct: 278 NRVRNSVLELYSIN-YDLTSNV-LPMTNSNQDFLFINHRGKNVGLPIRQRSVDTAWHRII 335

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +   LP     H  RH+ A  L   G  L  I+ +LGH  + TT+IY +V
Sbjct: 336 QKANLP-KIRIHDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHV 384


>gi|315154177|gb|EFT98193.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0031]
          Length = 318

 Score = 43.1 bits (100), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 18/150 (12%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI------QGKGDKIRIVPLLPSVRKAILEYYD 215
           ++   GLR +EAL+LTP +      TLR+      +      +      S R   +++  
Sbjct: 146 IIAKTGLRYAEALALTPADFDWSARTLRVNKTWNYKSTQGGFKSTKTTSSERTISIDFQI 205

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQR--------YIRQLRRYLGL-PLSTTAHTLR 266
           +  F L +   LP    I  +    G ++R        ++    ++LG+ P+S   H LR
Sbjct: 206 VGQFQLVIK-DLPANEPIFVEKFEDGSYKRQFNSTYNHFLVSECKHLGITPISL--HGLR 262

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           H+ A+ LL+ G  + SI + LGH  +  TQ
Sbjct: 263 HTHASVLLAAGVSIHSISARLGHANIGVTQ 292


>gi|256842310|ref|ZP_05547814.1| integrase/site-specific recombinase [Parabacteroides sp. D13]
 gi|256736194|gb|EEU49524.1| integrase/site-specific recombinase [Parabacteroides sp. D13]
          Length = 205

 Score = 43.1 bits (100), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           F R ++ L+   G+    T++T+RHSFA  L      +  I  +LGH  + TTQIY
Sbjct: 122 FNRNLKTLKEVAGIVSDVTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIY 177


>gi|237722535|ref|ZP_04553016.1| transposase [Bacteroides sp. 2_2_4]
 gi|229448345|gb|EEO54136.1| transposase [Bacteroides sp. 2_2_4]
          Length = 412

 Score = 43.1 bits (100), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 14/111 (12%)

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPLL  + K ILE Y     D  +   LP+   I  + LN      Y++++    G+  +
Sbjct: 293 VPLL-DIPKMILEKYKGKLPDGKV---LPI---ISNQKLNA-----YLKEIADVCGIKKN 340

Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGD 308
            T H  RH+FAT   L+ G  + ++  +LGH  + TTQIY  + N+K   D
Sbjct: 341 LTFHLARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNNKISND 391


>gi|284989998|ref|YP_003408552.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284063243|gb|ADB74181.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 371

 Score = 43.1 bits (100), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 9/146 (6%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA-----ILEY 213
           ++  +   GLRI EA +++  ++  D  T+ + G   +++   L+ S  K+     +LE 
Sbjct: 206 LVAFMVATGLRIGEACAVSWPDVDLDADTVTVTGTVLRVKGQGLVVSQPKSMAGERVLEL 265

Query: 214 YDLCPFDLNLN--IQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
              C   L        P+F   R + L +P   +R +R+    +G+P   T+H  R + A
Sbjct: 266 PSWCVALLRRRGPSSGPVFPAPRSRKLRDPNNTRRALREAFHAMGMP-GVTSHAFRKTVA 324

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQ 296
           T +   G   RS    LGH + S TQ
Sbjct: 325 TLMDEAGLSARSAADQLGHAKPSVTQ 350


>gi|187779931|ref|ZP_02996404.1| hypothetical protein CLOSPO_03527 [Clostridium sporogenes ATCC
           15579]
 gi|187773556|gb|EDU37358.1| hypothetical protein CLOSPO_03527 [Clostridium sporogenes ATCC
           15579]
          Length = 308

 Score = 43.1 bits (100), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 75/164 (45%), Gaps = 8/164 (4%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI-VPLLPSVRKAIL 211
           D R+ AI   L   G R    L++  +++     ++  +    K +I VPL  +++  ++
Sbjct: 150 DFRSWAICSFLLSTGCRAETLLNVHVEDVNFSTDSILFRHMKTKRQITVPLSNTLKVNLM 209

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           EY       + L  +  LF  + G+ +      + ++   ++  +      +T R++FAT
Sbjct: 210 EYIQ----RMGLKQEDYLFPLLNGEKMKYDTCHQNLKNYFKHRNVKFHG-VNTFRNTFAT 264

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS--KNGGDWMMEI 313
             L NG  +  IQ  LGH  +  T+ Y N++    N GD + ++
Sbjct: 265 MALKNGAGIYLIQKCLGHADIKMTERYINLHCIISNRGDCIWQL 308


>gi|30908754|gb|AAP37609.1| IntI [uncultured bacterium]
          Length = 160

 Score = 43.1 bits (100), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 28/41 (68%)

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
           QRY+++      +   T+ HTLRHSFATH+L  G D+R++Q
Sbjct: 120 QRYVKKAALSAKIIKPTSPHTLRHSFATHVLQMGYDIRTVQ 160


>gi|60680742|ref|YP_210886.1| putative transposase [Bacteroides fragilis NCTC 9343]
 gi|60492176|emb|CAH06939.1| putative transposase [Bacteroides fragilis NCTC 9343]
          Length = 412

 Score = 43.1 bits (100), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 70/155 (45%), Gaps = 20/155 (12%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD 215
            ++ C  GL   +  +L   NI       L I  K  K  I   VPLL  + K ILE Y 
Sbjct: 249 FIFSCFSGLAYVDVANLKEDNIRKSFDGNLWIITKRQKTNIDVNVPLL-DIPKMILEKY- 306

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
                L     LP+   I  + LN      Y++++    G+  + T H  RH+FAT   L
Sbjct: 307 --KGKLPNGKVLPI---ISNQKLNA-----YLKEIADVCGIKKNLTFHLARHTFATTTTL 356

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGD 308
           + G  + ++  +LGH  + TTQIY  + N+K   D
Sbjct: 357 AKGVPIETVSKMLGHTNIETTQIYARITNNKISND 391


>gi|30263996|ref|NP_846373.1| prophage LambdaBa02, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Ames]
 gi|47778252|ref|YP_020778.2| prophage lambdaba02, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186834|ref|YP_030086.1| prophage LambdaBa02, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Sterne]
 gi|65321318|ref|ZP_00394277.1| COG0582: Integrase [Bacillus anthracis str. A2012]
 gi|165872111|ref|ZP_02216750.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0488]
 gi|167633704|ref|ZP_02392028.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0442]
 gi|167641018|ref|ZP_02399275.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0193]
 gi|170688722|ref|ZP_02879926.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0465]
 gi|170705756|ref|ZP_02896219.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0389]
 gi|190565741|ref|ZP_03018660.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis Tsiankovskii-I]
 gi|227816697|ref|YP_002816706.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. CDC 684]
 gi|229604530|ref|YP_002868225.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0248]
 gi|254683690|ref|ZP_05147550.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. CNEVA-9066]
 gi|254721526|ref|ZP_05183315.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. A1055]
 gi|254736035|ref|ZP_05193741.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Western North
           America USA6153]
 gi|254743926|ref|ZP_05201609.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Kruger B]
 gi|254754295|ref|ZP_05206330.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Vollum]
 gi|254758014|ref|ZP_05210041.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Australia 94]
 gi|30258640|gb|AAP27859.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. Ames]
 gi|47551957|gb|AAT33253.2| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180761|gb|AAT56137.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. Sterne]
 gi|164712058|gb|EDR17596.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0488]
 gi|167511068|gb|EDR86457.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0193]
 gi|167531110|gb|EDR93797.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0442]
 gi|170129296|gb|EDS98160.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0389]
 gi|170667238|gb|EDT17997.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0465]
 gi|190562660|gb|EDV16626.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis Tsiankovskii-I]
 gi|227005467|gb|ACP15210.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. CDC 684]
 gi|229268938|gb|ACQ50575.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0248]
          Length = 376

 Score = 43.1 bits (100), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 68/159 (42%), Gaps = 37/159 (23%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQ-------GKGD--------KIRIVPLLPSVRKAIL 211
           G+RI E L+L  ++I  +   + +Q       GK +          R++P+   + + +L
Sbjct: 198 GMRIGEVLALQWKDINFESKVIHVQRTLTLVDGKYELGETKTEASNRMIPMTQELMRELL 257

Query: 212 EY--------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           EY        +DL     N  I  P     + K L   +   YIR              H
Sbjct: 258 EYQSHKKDNSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYIR-------------FH 304

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
            +R +F T L+ +G + + +  +LGH  +STT  IYT+V
Sbjct: 305 DIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDV 343


>gi|332829744|gb|EGK02390.1| hypothetical protein HMPREF9455_01660 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 453

 Score = 43.1 bits (100), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 12/105 (11%)

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           V LLP + K ++E Y L   +   N   P+       P +     R ++++ +  G+   
Sbjct: 293 VKLLP-IAKQLIEQYRLVAKN---NFVFPV-------PSHSDNMNRCLQRIAKLCGVNKR 341

Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            T+H  RH+ AT + LS G  + ++  +LGH  ++TTQIY  + +
Sbjct: 342 VTSHMGRHTMATTVCLSQGVPIETVSQMLGHSCITTTQIYAKITN 386


>gi|332188952|ref|ZP_08390649.1| hypothetical protein SUS17_4066 [Sphingomonas sp. S17]
 gi|332011013|gb|EGI53121.1| hypothetical protein SUS17_4066 [Sphingomonas sp. S17]
          Length = 94

 Score = 43.1 bits (100), Expect = 0.055,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 30/59 (50%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           T H  RH+ A HL+S G D+  I+S LGH  L TT  Y   N +     + ++   T P
Sbjct: 17  TPHAFRHATAVHLISAGVDVTVIRSWLGHVSLDTTNHYARANLETKRKALEQVAAPTTP 75


>gi|303325117|pdb|3NKH|A Chain A, Crystal Structure Of Integrase From Mrsa Strain
           Staphylococcus Aureus
 gi|303325118|pdb|3NKH|B Chain B, Crystal Structure Of Integrase From Mrsa Strain
           Staphylococcus Aureus
          Length = 244

 Score = 43.1 bits (100), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 30/169 (17%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGK---------GDKIRIVPLLPS------------ 205
           G RI E L++  ++I  D  +L I G          G  ++      S            
Sbjct: 68  GXRIGEXLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSC 127

Query: 206 --VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
             ++KAILE      ++   LN N    +F   +G P     F + +R+  + +G+    
Sbjct: 128 EILKKAILENKKDSKWNDGYLNRNF---VFTNHKGNPXQTERFNKILREAAKDVGIDKEV 184

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
           ++H LRHS  + L   G  L++I   +GH    TT  IY++V  +   D
Sbjct: 185 SSHILRHSHISLLSQQGVSLKAIXDRVGHSDHRTTLSIYSHVTEQXDKD 233


>gi|237726547|ref|ZP_04557028.1| tyrosine type site-specific recombinase [Bacteroides sp. D4]
 gi|270295238|ref|ZP_06201439.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
 gi|282877673|ref|ZP_06286488.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|294776622|ref|ZP_06742091.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|229435073|gb|EEO45150.1| tyrosine type site-specific recombinase [Bacteroides dorei
           5_1_36/D4]
 gi|270274485|gb|EFA20346.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
 gi|281300245|gb|EFA92599.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|294449537|gb|EFG18068.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 411

 Score = 43.1 bits (100), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 20/149 (13%)

Query: 160 LYLLYG-CGLRISEALSLTPQNI---MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYY 214
           LYL     GL  S+  +LT +NI    D+   + I + K   +  + LL    + I +Y 
Sbjct: 249 LYLFCAFTGLSFSDMRNLTEENIRTYFDEHEWININRQKTGVVSNIRLLDIANRIIGKYR 308

Query: 215 DLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            LC    N  I  +P +                IR + +  G+    T H  RH+ AT +
Sbjct: 309 GLCE---NGKIFPVPHYNTCLAG----------IRAVAKRCGITKHITWHQSRHTAATTV 355

Query: 274 -LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            LSNG  + ++ S+LGH  + TTQIY  +
Sbjct: 356 FLSNGVPIETVSSMLGHKSIKTTQIYAKI 384


>gi|187921989|ref|YP_001893578.1| integrase domain protein SAM domain protein [Burkholderia
           phytofirmans PsJN]
 gi|187720427|gb|ACD21649.1| integrase domain protein SAM domain protein [Burkholderia
           phytofirmans PsJN]
          Length = 397

 Score = 43.1 bits (100), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 50/212 (23%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQS-----------TLRIQGKGDKIRIV--P 201
           R+ A   LL   G+R++EA SL   ++ D  +           TL+   KG K+R++  P
Sbjct: 188 RDRAFADLLLATGMRVAEANSLLLADLPDPDAPECWGKKTIPLTLKRGTKGGKVRVIRIP 247

Query: 202 L--LPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +  L +V + + E  +    D++++ Q P  L+    G P+    +    R+  +  G  
Sbjct: 248 IHVLRTVYRYVAEDRENALADISMS-QRPAELWVTETGAPMKTARWHDVFRRASKTSGN- 305

Query: 258 LSTTAHTLRHSFATHLLSN-----------------------GGDLRSIQSILGHFRLST 294
              T H LRH+FA H L+                           LR +Q +LGH  L++
Sbjct: 306 -QCTPHMLRHAFAIHQLTAMIQRLISDPTYRTDPHQPYRTLLKDPLRQLQRLLGHASLAS 364

Query: 295 TQIYTN-------VNSKNGGDWMMEIYDQTHP 319
           T IY +       +   + GDW + +  +  P
Sbjct: 365 TFIYLDCLEEVDRMIDDSLGDWTVPLQTRDEP 396


>gi|161789153|ref|YP_001595727.1| phage integrase family protein [Vibrio sp. 0908]
 gi|161761439|gb|ABX77084.1| phage integrase family protein [Vibrio sp. 0908]
          Length = 213

 Score = 43.1 bits (100), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 78/179 (43%), Gaps = 23/179 (12%)

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG-------DKIRIVPL 202
           KW + R + ++ L     LRIS+ L L      DD  T++++G+        +K    P 
Sbjct: 39  KWGNHREAELVMLGCNVALRISDLLKLK----FDDIKTMQLEGEDIGYVELEEKKTGKPK 94

Query: 203 LPSVRKAILEYYDLCPFDLNLN--IQLPLFRG----IRG--KPLNPGVFQRYIRQLRRYL 254
             ++ +  L+    C   L +N    + LF+     ++G  KP++       +  ++  L
Sbjct: 95  RLTLNRTALQ----CVERLRINNPEAIYLFQATGNRVKGDPKPVSRQWISTKLIDVKDSL 150

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GL  S   H+LR +F  H   NG D+  +Q +  H  ++ T  Y  +  +   D  + I
Sbjct: 151 GLDYSLNTHSLRKTFGYHAYKNGADINVLQKLFNHSSVTETFKYIGITDERVRDVYLSI 209


>gi|29375984|ref|NP_815138.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|29343446|gb|AAO81208.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
          Length = 408

 Score = 43.1 bits (100), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 72/170 (42%), Gaps = 33/170 (19%)

Query: 162 LLYGCGLRISEALSLTPQNI--------MDDQSTLRIQGKGDKI----------RIVPLL 203
           +++  GLR  E ++L   N          D Q   R +  G  I          R + + 
Sbjct: 218 IIFDLGLRKGEVMALRWFNFDFRDNILTFDKQRLYRKEQPGQVILDDVKTDAGKRSLKMT 277

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLP--------LFRGIRGKPLNPGVFQRYI----RQLR 251
             VR ++LE Y +  +DL  N+ LP        LF   RGK +   + QR +     ++ 
Sbjct: 278 NRVRNSVLELYSIN-YDLTSNV-LPMTNSNQDFLFINHRGKNVGLPIRQRSVDTAWHRII 335

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +   LP     H  RH+ A  L   G  L  I+ +LGH  + TT+IY +V
Sbjct: 336 QKANLP-KIRIHDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHV 384


>gi|325694509|gb|EGD36418.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK150]
          Length = 356

 Score = 43.1 bits (100), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 103/276 (37%), Gaps = 41/276 (14%)

Query: 68  YTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL- 125
           Y   R  ++   TQ  +   ++ R+LS + S  KYL +     +      RN+ K  +  
Sbjct: 85  YLRERPLLNANTTQNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATK 144

Query: 126 -------PRALNEKQALTLVDNVLLHTSHETKWIDA-------------------RNSAI 159
                   RA N KQ L L D     T    ++ID                    R+ AI
Sbjct: 145 KKKETLAARAENIKQKLFLGD----ETEEFLQYIDTEYPKKLSNRALSSFNKNKERDLAI 200

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP- 218
           + LL   G+R+SEA++L  ++I      + +  KG K   V +    +  + EY  +   
Sbjct: 201 IALLLASGVRLSEAVNLDLKDINLKMMVIEVTRKGGKRDSVNVAAFAKSYLEEYLSIRSK 260

Query: 219 -FDLNLNIQLPLFRGIRGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
            +              RG P  ++    ++ + +        +  T H LRH+ AT L  
Sbjct: 261 RYKAEKTDTAFFLTEYRGTPNRIDASSVEKMVAKYSE--SFKVRVTPHKLRHTLATRLYD 318

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGD 308
                  +   LGH     T +YT++     KN  D
Sbjct: 319 ATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|238025655|ref|YP_002909887.1| Phage integrase family protein [Burkholderia glumae BGR1]
 gi|237880320|gb|ACR32651.1| Phage integrase family protein [Burkholderia glumae BGR1]
          Length = 613

 Score = 43.1 bits (100), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 27/45 (60%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           T+ H+LRH+F T  +++G  L  +Q +LGH  L TT +Y     +
Sbjct: 546 TSPHSLRHTFGTQSVASGMTLDVVQQLLGHASLQTTSVYVTAEQR 590


>gi|227553215|ref|ZP_03983264.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
 gi|227177581|gb|EEI58553.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
          Length = 408

 Score = 43.1 bits (100), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 72/170 (42%), Gaps = 33/170 (19%)

Query: 162 LLYGCGLRISEALSLTPQNI--------MDDQSTLRIQGKGDKI----------RIVPLL 203
           +++  GLR  E ++L   N          D Q   R +  G  I          R + + 
Sbjct: 218 IIFDLGLRKGEVMALRWFNFDFRDNILTFDKQRLYRKEQPGQVILDDVKTDAGKRSLKMT 277

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLP--------LFRGIRGKPLNPGVFQRYI----RQLR 251
             VR ++LE Y +  +DL  N+ LP        LF   RGK +   + QR +     ++ 
Sbjct: 278 NRVRNSVLELYSIN-YDLTSNV-LPMTNSNQDFLFINHRGKNVGLPIRQRSVDTAWHRII 335

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +   LP     H  RH+ A  L   G  L  I+ +LGH  + TT+IY +V
Sbjct: 336 QKANLP-KIRIHDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHV 384


>gi|182418193|ref|ZP_02949493.1| putative tyrosine recombinase XerD [Clostridium butyricum 5521]
 gi|237666214|ref|ZP_04526201.1| site-specific recombinase, phage integrase family [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182378011|gb|EDT75551.1| putative tyrosine recombinase XerD [Clostridium butyricum 5521]
 gi|237658304|gb|EEP55857.1| site-specific recombinase, phage integrase family [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 198

 Score = 43.1 bits (100), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 85/196 (43%), Gaps = 24/196 (12%)

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           + ++N+  R L + +   L   +  ++ H +     R+ AI  + Y CGLR +E +SL  
Sbjct: 1   MNENNNRLRYLTQDELRNLFYAIETYSGHNS----LRDLAIFRVAYRCGLRATE-ISLIK 55

Query: 179 QNIMDDQSTLRIQG-----KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
               DD S  + +      KG +   + L    +  + EY          N    +F+  
Sbjct: 56  ---FDDYSIRKSELYCKRLKGSRNNTIRLDLQTKNVLEEYISQKGI---YNSDEIIFKSQ 109

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTA-----HTLRHSFATHLLSNGGDLRSIQSILG 288
           +  P++      Y+  +++Y  L           HT++H+ A HL  +  D++ IQ  LG
Sbjct: 110 KNNPISRKTLD-YL--MKKYCKLAKIDDVSKHHFHTIKHTTAVHLADSEMDIKEIQWWLG 166

Query: 289 HFRLSTTQIYTNVNSK 304
           H  ++ T+IY    SK
Sbjct: 167 HKSVNNTEIYFQFTSK 182


>gi|325855557|ref|ZP_08171868.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483771|gb|EGC86731.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 404

 Score = 43.1 bits (100), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYT 299
             +Q Y++ LR    +    T HT RH+FAT + L  G  + ++  +LGH  +S T+ Y 
Sbjct: 320 ATYQSYLKALRLRASIAFPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYA 379

Query: 300 NVN 302
            V 
Sbjct: 380 KVT 382


>gi|325661845|ref|ZP_08150466.1| hypothetical protein HMPREF0490_01202 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471823|gb|EGC75040.1| hypothetical protein HMPREF0490_01202 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 377

 Score = 43.1 bits (100), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 90/206 (43%), Gaps = 53/206 (25%)

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +E + L  V N      H  ++ DA      Y+L+  GLRISE   LT +++   +  + 
Sbjct: 150 DEAKFLEFVKN----DPHYNQYYDA-----FYILFKTGLRISEFCGLTVKDLDFKEDIIN 200

Query: 190 IQGKGDK----------------IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----- 228
           +  +  +                 R++P+   V++A L            N + P     
Sbjct: 201 VNHQLQRTREMKYIIVFTKTTSGTRLLPMEADVKEAFLRILK--------NRRKPKREPM 252

Query: 229 -------LFRGIRGKPLNPGVFQRYIRQLR-RY-----LGLPLSTTAHTLRHSFATHLLS 275
                  LF    G+P+    +++Y++  R +Y     L LP   T H  RH++ T++ +
Sbjct: 253 VDGYGGFLFLDKNGRPMVALHWEKYMQHAREKYNREHLLQLP-PITPHVCRHTYCTNMAN 311

Query: 276 NGGDLRSIQSILGHFRLSTT-QIYTN 300
           +G + +++Q ++GH  +S T  +YT+
Sbjct: 312 SGMNPKTLQYLMGHSDVSVTLNVYTH 337


>gi|291444654|ref|ZP_06584044.1| site-specific recombinase [Streptomyces roseosporus NRRL 15998]
 gi|291444673|ref|ZP_06584063.1| site-specific recombinase [Streptomyces roseosporus NRRL 15998]
 gi|291347601|gb|EFE74505.1| site-specific recombinase [Streptomyces roseosporus NRRL 15998]
 gi|291347620|gb|EFE74524.1| site-specific recombinase [Streptomyces roseosporus NRRL 15998]
          Length = 314

 Score = 43.1 bits (100), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 76/186 (40%), Gaps = 24/186 (12%)

Query: 116 MRNLKKSNSLPRALNEKQALTLVD---NVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           MR +K     P  L E +   + D   + L      T + D R++A+L LL   G+R+SE
Sbjct: 107 MRTMK-----PPTLPEVEVPVIPDADLSKLFKACKGTTYADRRDTALLMLLLDTGVRLSE 161

Query: 173 ALSLTPQNIMD---DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC------PFDLNL 223
              LT + + D   D   L + GKG K R VP   +   A+  Y          P D   
Sbjct: 162 ---LTDRRVGDLDLDLKVLHVLGKGGKTRPVPFGNTCATALDRYLRAAAKHKGKPLD--- 215

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRS 282
           + ++ L+ G R K     ++       RR     +     H  RH+FA     NGG+   
Sbjct: 216 DDEMWLWWGHRNKGQRLTIWGVGTMLKRRCAQAGIGELHPHQFRHTFAHQWKVNGGNEDD 275

Query: 283 IQSILG 288
           +  I G
Sbjct: 276 LMRITG 281


>gi|150009895|ref|YP_001304638.1| putative integrase [Parabacteroides distasonis ATCC 8503]
 gi|149938319|gb|ABR45016.1| putative integrase [Parabacteroides distasonis ATCC 8503]
          Length = 211

 Score = 43.1 bits (100), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 16/88 (18%)

Query: 225 IQLPLFRG---IRGKPLNPG----------VFQRYIRQLRRYL---GLPLSTTAHTLRHS 268
           + +PL  G   I G+PL  G           ++   + ++R++   G+    + H  RHS
Sbjct: 102 VVIPLNDGLVSIIGEPLADGNKDVLIFNLPSYESCCKSVKRWVKRTGIDKHISWHCGRHS 161

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           FA ++L+NG +++++ S+LGH  L  T+
Sbjct: 162 FAVNILNNGANIKTVASLLGHSGLKHTE 189


>gi|330991502|ref|ZP_08315453.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
 gi|329761521|gb|EGG78014.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
          Length = 390

 Score = 43.1 bits (100), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            Q+  R++R+  GL      H LRHSFA+  L  G DL  I  +LGH  + TT  Y ++ 
Sbjct: 306 LQKPWRRIRKAAGLD-GVRLHDLRHSFASDALEMGADLTMIGRMLGHSDIKTTSRYAHLK 364

Query: 303 SKN 305
            +N
Sbjct: 365 REN 367


>gi|326797743|ref|YP_004315562.1| integrase family protein [Sphingobacterium sp. 21]
 gi|326548507|gb|ADZ76892.1| integrase family protein [Sphingobacterium sp. 21]
          Length = 413

 Score = 43.1 bits (100), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 10/103 (9%)

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +PLLP   + I  Y D  P  +   + LP+        L+      Y++++    G+   
Sbjct: 293 IPLLPQALEIIGRYADYPPC-VAKGMVLPV--------LSNQKMNSYLKEIADLCGITKK 343

Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T H  RH+FAT + L+N   + ++  +LGH  + TTQ Y  +
Sbjct: 344 LTFHMARHTFATTVTLANNVPIETVSKMLGHTNIKTTQHYAKL 386


>gi|298374771|ref|ZP_06984729.1| integrase [Bacteroides sp. 3_1_19]
 gi|301308464|ref|ZP_07214418.1| integrase [Bacteroides sp. 20_3]
 gi|298269139|gb|EFI10794.1| integrase [Bacteroides sp. 3_1_19]
 gi|300833934|gb|EFK64550.1| integrase [Bacteroides sp. 20_3]
          Length = 310

 Score = 43.1 bits (100), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           F   +++L    G+    T++++RHSFAT L   G  +  I  +LGH  + TTQIY
Sbjct: 227 FNSSLKELANACGVTEMVTSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIY 282


>gi|256845343|ref|ZP_05550801.1| tyrosine recombinase XerC [Fusobacterium sp. 3_1_36A2]
 gi|256718902|gb|EEU32457.1| tyrosine recombinase XerC [Fusobacterium sp. 3_1_36A2]
          Length = 290

 Score = 43.1 bits (100), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 117/291 (40%), Gaps = 20/291 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  LE E      T+ S   D   FL +L      K  I T+ +L    IR ++++ 
Sbjct: 12  KDFIYYLEFEENKKNNTVISIRKDLNNFLGYLN-----KKNITTLDKLDELIIREYLTEL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +   + + +  R LS IK F KYL    +  +   + +   K      + LN  +     
Sbjct: 67  KDFDLSNSTYNRRLSSIKKFYKYLINNNLKEKGKEILIEGKKSDEKKIQYLNSDEI---- 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKI 197
             +L     E  +   R+  +  LLY  G+ ++E LSL   N  ++ +    ++ K    
Sbjct: 123 -KILREEMKEESFNVLRDRLMFELLYSSGMTVAELLSLGELNFNLEKREVYLLKNKIS-- 179

Query: 198 RIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           R +    + ++  L++     +    + N NI   +F       L     +R I +    
Sbjct: 180 RTLYFSQTCKEVYLKFLIAKKEKFKEENNTNI---IFVNNSNMRLTDRSVRRLINKYSEK 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             L    + +TLRHSF  ++L NG     +  +L    +    +Y N+  K
Sbjct: 237 ANLQKEVSPYTLRHSFCIYMLKNGMPKEYLAKLLDLKSIGLLDVYENLCKK 287


>gi|153953104|ref|YP_001393869.1| recombinase [Clostridium kluyveri DSM 555]
 gi|146345985|gb|EDK32521.1| Predicted recombinase [Clostridium kluyveri DSM 555]
          Length = 321

 Score = 43.1 bits (100), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 114/298 (38%), Gaps = 24/298 (8%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RGLS+ T+++Y    + F  FL          +    L    I +++   + + +   ++
Sbjct: 37  RGLSEDTIKTYYYHNKYFCEFLG-------KNKNCGGLDVKTIESYVLFLQEKGMKGTTI 89

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
              L  I   LKY  K+    E    N+  +K          E +      N LL     
Sbjct: 90  NSYLQNISPVLKYCMKKGYIFE--YFNIPYVKVQQEHKEIFTEDEL-----NTLLQPPKS 142

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVR 207
             ++  R    ++LL   GLR SE   L   N+ M D+       K  K R +P+  S+ 
Sbjct: 143 KDFVSIRVYTCVWLLASTGLRASELRHLKVNNLNMIDRIITCNYTKNKKARYLPISSSLY 202

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + +  Y +L   D     +  LF  + G  L+    Q+ I +     G+  S   H  RH
Sbjct: 203 EVLDNYLNLRKGDG----EDYLFPTVYGDILSRTSLQKGIVKYCHQRGIKKSGI-HIYRH 257

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           +F T  +        +++I GH        Y N    +    M+E+ D   P + +K+
Sbjct: 258 TFITRSVEKNVSPLILKNITGHATFKQLNNYYNSRMSS----MVEVIDNIAPQLNKKE 311


>gi|332828048|gb|EGK00770.1| hypothetical protein HMPREF9455_03044 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 453

 Score = 43.1 bits (100), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 12/105 (11%)

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           V LLP + K ++E Y L   +   N   P+       P +     R ++++ +  G+   
Sbjct: 293 VKLLP-IAKQLIEQYRLVAKN---NFVFPV-------PSHSDNMNRCLQRIAKLCGVNKR 341

Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            T+H  RH+ AT + LS G  + ++  +LGH  ++TTQIY  + +
Sbjct: 342 VTSHMGRHTMATTVCLSQGVPIETVSQMLGHSCITTTQIYAKITN 386


>gi|307566421|ref|ZP_07628857.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307344873|gb|EFN90274.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 375

 Score = 43.1 bits (100), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYT 299
             +Q Y++ LR    +    T HT RH+FAT + L  G  + ++  +LGH  +S T+ Y 
Sbjct: 291 ATYQSYLKALRLRASIAFPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYA 350

Query: 300 NVN 302
            V 
Sbjct: 351 KVT 353


>gi|242279119|ref|YP_002991248.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
 gi|242122013|gb|ACS79709.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
          Length = 395

 Score = 43.1 bits (100), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 14/153 (9%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQG--------KGDKIRIVPLLPSVRKAILEYYDLCP 218
           G+R+ E  +LT Q+I   ++ + I+G        K    R+  ++  +R  +LE   L  
Sbjct: 240 GMRMGEIFALTRQDIDLVENRIIIKGRSGADDGPKAGGSRVAYIIEKIR-PMLEN-RLAL 297

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP---LSTTAHTLRHSFATHLLS 275
           F     +  P   G   K + P  F   ++ L    G+    L   AH  RH+FA+ L++
Sbjct: 298 FQGREALIFPKPNGGIRKCIGPD-FATLMKHLGWNDGVTDRRLRFCAHCFRHTFASRLIA 356

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            G  L  ++ +LGH  + TT  YT+   +   D
Sbjct: 357 KGAPLTVVKKMLGHSNIQTTMRYTHTQDEQCRD 389


>gi|149916267|ref|ZP_01904787.1| Phage integrase [Roseobacter sp. AzwK-3b]
 gi|149809721|gb|EDM69573.1| Phage integrase [Roseobacter sp. AzwK-3b]
          Length = 390

 Score = 43.1 bits (100), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 20/159 (12%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----QGKGDKI----RIVPLLPSVR 207
           N AIL+LLY  G R SE L+   ++I  D+   RI     G+   +    + V +L S R
Sbjct: 226 NLAILFLLY-TGARKSEVLNAEWRSINMDRCEWRIPLSKNGQPRTVILSQKAVAILQSAR 284

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP--GVFQRYIRQLRRYLGLPLSTTAHTL 265
                +Y      ++     P       + L P   +++ + R +R    LP     H L
Sbjct: 285 SYQQRHYGKQAKQVSAVFANP-------QTLLPYHNIWETWKR-VRIEADLP-DLRLHDL 335

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           RHS+A+ L++ G  +  +Q +LGH  ++TTQ Y ++ S+
Sbjct: 336 RHSYASTLINAGVSIYEVQKLLGHSHIATTQRYAHLASE 374


>gi|317504298|ref|ZP_07962286.1| integrase [Prevotella salivae DSM 15606]
 gi|315664592|gb|EFV04271.1| integrase [Prevotella salivae DSM 15606]
          Length = 382

 Score = 43.1 bits (100), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 31/53 (58%)

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           Y++++    G+  + T H  RH+FAT  +S G  + S+  +LGH  +  TQIY
Sbjct: 327 YLKEIADLCGIKKNLTFHMARHTFATMSISKGVPMESVSKMLGHTNIRITQIY 379


>gi|260577378|ref|ZP_05845348.1| integrase family protein [Rhodobacter sp. SW2]
 gi|259020414|gb|EEW23740.1| integrase family protein [Rhodobacter sp. SW2]
          Length = 423

 Score = 43.1 bits (100), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 10/77 (12%)

Query: 234 RGKP-LNPG-VFQRYIRQLRRYLG-------LPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
           +G P L PG    + +R++RR+         LP     H LRH+FA+ L+S G  L  I 
Sbjct: 311 KGNPWLFPGETVGQPVREIRRFWAKVQKDADLP-DLHIHDLRHTFASLLVSGGASLEMIG 369

Query: 285 SILGHFRLSTTQIYTNV 301
            +LGH ++ TTQ Y ++
Sbjct: 370 KLLGHSQMQTTQRYAHL 386


>gi|34558588|gb|AAQ75061.1| putative integrase [Lactobacillus phage JCL1032]
          Length = 370

 Score = 43.1 bits (100), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 67/166 (40%), Gaps = 14/166 (8%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQS----TLRIQG-KGDKIRIVP-----LLPSVRKAIL 211
            +Y  G+R  EA  L  +NI D  +    T+   G K D  + +       LP     I+
Sbjct: 204 FMYLTGMRFGEATGLQFKNIHDQYADITGTMWANGIKSDSPKTLASFRSVFLPKQAIEIV 263

Query: 212 EYYDLCPFDLNLNIQLPLF-RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           E++     D N      +F   ++  P        Y++   +  G+    T H  RH+  
Sbjct: 264 EWFK--QHDRNAEPDDFIFINQLKHVPFKMNTVALYLKNKSKEAGIDRKITTHFFRHTHI 321

Query: 271 THLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYD 315
           + L   G  L  IQ  +GH +  TT +IY +V  K   D   +I D
Sbjct: 322 SKLAEQGVPLHVIQKRVGHIKAETTREIYLHVTKKMQEDMEKQIND 367


>gi|119953753|ref|YP_950558.1| integrase [Streptococcus phage SMP]
 gi|118430565|gb|ABK91889.1| integrase [Streptococcus phage SMP]
          Length = 380

 Score = 43.1 bits (100), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 28/167 (16%)

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR-------IVPLLPS------VRKA 209
           L GC  RI EA+SL P+N   +   L++ G  D  +         P   +      + K 
Sbjct: 205 LNGC--RIGEAVSLEPENRDFETKILQLHGTYDHTKGYRNGEKTTPKTNASYRETFMTKR 262

Query: 210 ILEYYDLCPF--DLNLNIQLPLFRGI-------RGKPLNPGVFQRYIRQLRRYLGLPLST 260
            +E  +   F  +L  N   P +R +        G P+    F   +++  + L  P+  
Sbjct: 263 EMEIIEELEFMNELEKNTN-PRYRDMGYIFTTKNGVPIQTNSFNLALKKANQRLEKPIQK 321

Query: 261 --TAHTLRHSFATHLLSNGGDLRSIQSILGHFRL-STTQIYTNVNSK 304
             T+H  RH+  + L  N   L++I   +GH    +TTQIYT+V  K
Sbjct: 322 NLTSHIFRHTLVSRLAENRVPLKAIMDRVGHADAKTTTQIYTHVTKK 368


>gi|1085059|emb|CAA55635.1| unknown [Lactobacillus leichmannii]
          Length = 308

 Score = 43.1 bits (100), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 6/154 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL----LPSVRKAI 210
           R+ A++ L+ G G+R+SE   +  +++   ++TL I  KG +   VP+    LP + K +
Sbjct: 139 RDMAVIALILGTGIRVSECAGVDMKDLNLKEATLDITRKGGQRDSVPVADWTLPYLEKYL 198

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
               D                    + +     ++ + +     G PL  T H LRH+ A
Sbjct: 199 AIRADRYKAPATNKAFFLTSYHQECRRMTTNAIEKMVGKYSAAFGHPL--TPHKLRHTVA 256

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + L     D   +   LG    S T +YT+V+ +
Sbjct: 257 SELYQATKDQVMVAQQLGQKGTSATDLYTHVDQR 290


>gi|325298368|ref|YP_004258285.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317921|gb|ADY35812.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 404

 Score = 43.1 bits (100), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 13/106 (12%)

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPLL  + +AIL+ Y+          QLP  +G     L+      Y++++    G+  +
Sbjct: 294 VPLL-KIPQAILQKYEG---------QLP--KGQLLPVLSNQKLNSYLKEIADLCGINKN 341

Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            T H  RH+FAT   L+ G  + ++  +LGH  + TTQIY  + ++
Sbjct: 342 ITFHLARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNE 387


>gi|298480948|ref|ZP_06999143.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           D22]
 gi|298272971|gb|EFI14537.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           D22]
          Length = 368

 Score = 43.1 bits (100), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 10/133 (7%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G R+SE L  T ++I+  + TL+  GKG+K R       +++ +  Y       +  N +
Sbjct: 227 GARLSEFLQFTWEDIVAGEVTLK--GKGNKYRRFFFQKQLQREVKIY-------VAENNK 277

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQS 285
             LF   R  P+      + ++    + G+       H  RH FA   L    D+  +  
Sbjct: 278 TGLFAVGRYGPITQRGLAQSMKVWGSHCGIDSKKMHPHAFRHFFAKMFLKKTKDVIQLAD 337

Query: 286 ILGHFRLSTTQIY 298
           +LGH  + TT+IY
Sbjct: 338 LLGHGSVDTTRIY 350


>gi|291513831|emb|CBK63041.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 411

 Score = 43.1 bits (100), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNV-NSK 304
           +++L R  G  +  T H  RH+ AT  LLS+G  + ++  +LGH  L TTQIY  + N K
Sbjct: 329 LKELGRQCGFKIRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQK 388

Query: 305 NGGDWMMEI 313
              D  ME+
Sbjct: 389 ISSD--MEV 395


>gi|260495435|ref|ZP_05815561.1| site-specific recombinase [Fusobacterium sp. 3_1_33]
 gi|260196972|gb|EEW94493.1| site-specific recombinase [Fusobacterium sp. 3_1_33]
          Length = 396

 Score = 43.1 bits (100), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 91/223 (40%), Gaps = 36/223 (16%)

Query: 105 RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLY 164
           RK+  E+ +L +   KK   +    N K+  T ++ +  H     K+    N A+ Y   
Sbjct: 166 RKLIKENIMLEIPRPKKEKYISEVFNLKEINTFLNYIKGH-----KFELELNLALFY--- 217

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGK-----------------GDKIRIVPLLPSVR 207
             G R SE L L    I  D +T+ +  K                     RI+PLL S++
Sbjct: 218 --GFRRSELLGLRFSVIDFDNNTILVNTKITSSEEEKLVAKQKMKNDSSYRIMPLLASIK 275

Query: 208 KAILEYYDLCPFDLNL--NIQLPLFRGI-----RGKPLNPGVFQRYIRQLRRYLGLPLST 260
           + I++  +    D N   +     + G       G+ + P    +  R+L +  GL    
Sbjct: 276 ELIIQRVERIKKDKNFFKSSYTKKWEGFICVDEDGELIKPDRVTKTFRRLIKECGLK-KI 334

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN 302
             H LRHS AT L      L+ IQ  LGH  + TT  IY++ +
Sbjct: 335 RLHDLRHSCATLLYEQDIQLKDIQMWLGHSDIQTTANIYSHFD 377


>gi|28379038|ref|NP_785930.1| prophage Lp3 protein 1, integrase [Lactobacillus plantarum WCFS1]
 gi|28271876|emb|CAD64781.1| prophage Lp3 protein 1, integrase [Lactobacillus plantarum WCFS1]
          Length = 385

 Score = 43.1 bits (100), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 68/171 (39%), Gaps = 24/171 (14%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKA---- 209
           S    L    G+R SE L L   +I     T+R+   Q +GD  R++   P   ++    
Sbjct: 201 SVFFRLAAFTGMRKSEMLCLEWSDIDFSNHTIRVNKTQSRGDGARLLVQAPKTARSNRTV 260

Query: 210 --------ILEYYD------LCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
                   IL+++       L  F  N+N     +F     +   P   ++++       
Sbjct: 261 YLDPTTIKILQHWQVDQKKWLLRFGFNINQGNHYVFANENNEMFQPSKPRKWLEHTLTKY 320

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
            L    T H  RH++AT        ++S+Q  LGH    TT  IYT V +K
Sbjct: 321 DLK-HVTVHAFRHTYATLAFEAHASIKSVQDQLGHSSYRTTLDIYTAVTAK 370


>gi|331083353|ref|ZP_08332466.1| hypothetical protein HMPREF0992_01390 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330404434|gb|EGG83979.1| hypothetical protein HMPREF0992_01390 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 411

 Score = 43.1 bits (100), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 89/221 (40%), Gaps = 49/221 (22%)

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           R   K+  +  AL  +Q    ++ +  H  +   W       +  +L G G RI EAL L
Sbjct: 172 RESGKNRGIRHALTVEQQRAFMEYIANHPIYYHWW------PMFTVLLGTGCRIGEALGL 225

Query: 177 TPQNIMDDQSTLRI--------QGKGDK-------------IRIVPLLPSVRKAI-LEYY 214
             Q++  D+ T+ I        + + +K             IR +P+L  V+ A  + Y 
Sbjct: 226 RWQDLDYDKRTISINHSLSYYQKPESNKSVLRISKPKTEAGIRTIPMLDIVKDAFEMLYE 285

Query: 215 DLCPFDLNLN----IQLPLFRGIRGKPLNPGVFQRYIRQL----------------RRYL 254
           +      N +    +   +F    G   NP      I+++                R  +
Sbjct: 286 EQLENGFNESEIDGMSGFIFCNRFGTVPNPQTVNHTIKRIANSYNADEVVRAKKERRDPI 345

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            LP + + H LRH+F T L  N  +L+ IQSI+GH  + TT
Sbjct: 346 ILP-NFSCHHLRHTFCTRLCENETNLKVIQSIMGHRNIETT 385


>gi|307942963|ref|ZP_07658308.1| phage integrase family recombinase protein [Roseibium sp.
           TrichSKD4]
 gi|307773759|gb|EFO32975.1| phage integrase family recombinase protein [Roseibium sp.
           TrichSKD4]
          Length = 554

 Score = 43.1 bits (100), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 117/300 (39%), Gaps = 33/300 (11%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +W Q      G S+ T ++Y    RQ   F+      +I+ + I  +S+ + R      R
Sbjct: 256 DWWQEAS-RTGHSESTREAYTRAFRQLSEFVGHDDASRISTKDI--ISFKDHRLTQVSAR 312

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR----ALNEKQAL 135
           T   GD      L  +KS  ++  K  I  ++   ++   K S +  R     + E  A+
Sbjct: 313 TVADGD------LPALKSIFEWAVKNLILNDNPARDVAVAKSSKTHRRMRDFTIEEASAI 366

Query: 136 TLVDNVLLHTSHET--KWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQ 191
               +     + E   +W   R +   +L    G R+ E L L   +I+  D    ++I 
Sbjct: 367 LSASDGTKRQNKEKPQRWASRRWAP--WLCAYSGARVGEVLQLRKADIITIDGHVCMKIT 424

Query: 192 G-----KGDKIRIVPLLPSV-RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
                 KG + RI+PL P +  K  + Y +  P         PLF             + 
Sbjct: 425 PEAVTVKGGEERIIPLHPHIIEKGFMGYVEAAP-------DGPLFMWTGTGRSAWRTSKN 477

Query: 246 YIRQ-LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            +R+ +R+++  P    +H  RH+F T     G +   + +I GH   +  + Y   N K
Sbjct: 478 KLREFIRKHVSDPSVQPSHGWRHTFKTIGREVGIESDILDAICGHRPATVGKSYGEFNVK 537


>gi|260885894|ref|ZP_05736094.2| integrase [Prevotella tannerae ATCC 51259]
 gi|260851415|gb|EEX71284.1| integrase [Prevotella tannerae ATCC 51259]
          Length = 471

 Score = 43.1 bits (100), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 20/149 (13%)

Query: 160 LYLLYG-CGLRISEALSLTPQNI---MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYY 214
           LYL     GL  S+  +LT +NI    D+   + I + K   +  + LL    + I +Y 
Sbjct: 309 LYLFCAFTGLSFSDMRNLTEENIRTYFDEHEWININRQKTGVVSNIRLLDIANRIIGKYR 368

Query: 215 DLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            LC    N  I  +P +                IR + +  G+    T H  RH+ AT +
Sbjct: 369 GLCE---NGKIFPVPHYNTCLAG----------IRAVAKRCGITKHITWHQSRHTAATTV 415

Query: 274 -LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            LSNG  + ++ S+LGH  + TTQIY  +
Sbjct: 416 FLSNGVPIETVSSMLGHKSIKTTQIYAKI 444


>gi|91206293|ref|YP_538647.1| site-specific recombinase [Escherichia coli UTI89]
 gi|256855296|ref|YP_003162540.1| putative site-specific recombinase protein [Escherichia coli]
 gi|301046646|ref|ZP_07193778.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 185-1]
 gi|91075744|gb|ABE10624.1| site-specific recombinase [Escherichia coli UTI89]
 gi|256275508|gb|ACU68781.1| putative site-specific recombinase protein [Escherichia coli]
 gi|281181661|dbj|BAI57990.1| recombinase [Escherichia coli SE15]
 gi|300301412|gb|EFJ57797.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 185-1]
 gi|307629864|gb|ADN74167.1| putative site-specific recombinase protein [Escherichia coli UM146]
 gi|315290848|gb|EFU50217.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 153-1]
 gi|323954242|gb|EGB50029.1| phage integrase [Escherichia coli H263]
          Length = 246

 Score = 43.1 bits (100), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 40/173 (23%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRI----------QGKGDKIRIV 200
           D R+  +   L+  G+RI EA  LTP++   D  +  +RI          +   D++R+V
Sbjct: 59  DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLV 118

Query: 201 PL--LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP---GVFQRYIRQLRR--- 252
           PL  +  VR+  +E + +              R  R +PL P      + +++Q  +   
Sbjct: 119 PLTDISYVRQ--MESWMIT------------TRPRRREPLWPVTDETMRNWLKQAVKRAE 164

Query: 253 ----YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               +  +P+  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 165 ADGVHFSIPV--TPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|325278828|ref|YP_004251370.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
 gi|324310637|gb|ADY31190.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
          Length = 409

 Score = 43.1 bits (100), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 18/154 (11%)

Query: 167 GLRISEALSLTPQNI---MDDQSTLRI--QGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           GL   EA +L   ++   +D++  + +  Q  G+ + I PLLP  +K + +Y        
Sbjct: 258 GLAYREAANLCKAHLIKGLDNEIWINMTRQKTGNSMEI-PLLPPAQKILSKY-----ITG 311

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA-THLLSNGGDL 280
           N  I  PL   I  + +N      Y++++   LG+    T HT R +FA T LL+N   +
Sbjct: 312 NEPINKPLLPMISNQRMNS-----YLKEIAEILGINKRLTTHTARKTFASTILLNNDVPI 366

Query: 281 RSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
             +  +LGH  +  T+  Y  V +KN    M ++
Sbjct: 367 EIVSKLLGHSSIRVTEAAYAQVMNKNTSRHMNQL 400


>gi|126659715|ref|ZP_01730843.1| Tn554-related, transposase A [Cyanothece sp. CCY0110]
 gi|126618963|gb|EAZ89704.1| Tn554-related, transposase A [Cyanothece sp. CCY0110]
          Length = 370

 Score = 43.1 bits (100), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 38/206 (18%)

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           +K+  + P  L ++Q   L D    +          R+  I+ LL   G+R  E L L  
Sbjct: 164 VKEPKNFPGCLTDEQVTQLADACYSY----------RDRLIVMLLRETGVRRGELLGLHL 213

Query: 179 QNIMDDQSTLRIQ------------GKGDKIRIVPLLPSVRKAILEYY------DLCPFD 220
            ++ D  S  RI+             KG + R +P++ + R A+ E +      +  P  
Sbjct: 214 VDVADFDSRGRIRIVRRDNNPNSATAKGTE-REIPIIHN-RDAVKETFHAYLLEEYPPEA 271

Query: 221 LNLNIQLPLFRGIRG----KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
             L   + LF  + G    KP++         QL    G+      H  RH+FAT +L  
Sbjct: 272 EKLEHGM-LFVNLEGEYIGKPMSSARLNSLFYQLEERTGI--KAHPHLFRHTFATRMLQA 328

Query: 277 GGDLRSIQSILGHFRLSTTQ-IYTNV 301
           G   + +Q +LGH  ++TT+ IY++V
Sbjct: 329 GYLDQYVQQLLGHKSIATTKDIYSHV 354


>gi|317475379|ref|ZP_07934643.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316908407|gb|EFV30097.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 411

 Score = 43.1 bits (100), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 18/148 (12%)

Query: 160 LYLLYG-CGLRISEALSLTPQNI---MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYY 214
           LYL     GL  S+  +LT +NI    D+   + I + K   +  + LL    + I +Y 
Sbjct: 249 LYLFCAFTGLSFSDMRNLTEENIRTYFDEHEWININRQKTGVVSNIRLLDIANRIIGKYR 308

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL- 273
            LC  D  +   +P +                IR + +  G+    T H  RH+ AT + 
Sbjct: 309 GLCE-DGRI-FPVPHYNTCLAG----------IRAVAKRCGITKHITWHQSRHTAATTIF 356

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LSNG  + ++ S+LGH  + TTQIY  +
Sbjct: 357 LSNGVPIETVSSMLGHKSIKTTQIYAKI 384


>gi|126660765|ref|ZP_01731862.1| phage integrase [Cyanothece sp. CCY0110]
 gi|126617956|gb|EAZ88728.1| phage integrase [Cyanothece sp. CCY0110]
          Length = 362

 Score = 43.1 bits (100), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 10/62 (16%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           FQ+  RQL          +AH+LRH+  T  +  G DLR +Q +LGH    TT +Y +V 
Sbjct: 296 FQQPQRQL----------SAHSLRHTAGTLAIRAGSDLRQVQDLLGHADPRTTALYAHVA 345

Query: 303 SK 304
            +
Sbjct: 346 DR 347


>gi|328946315|gb|EGG40459.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK1087]
          Length = 356

 Score = 43.1 bits (100), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 103/276 (37%), Gaps = 41/276 (14%)

Query: 68  YTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL- 125
           Y   R  ++   TQ  +   ++ R+LS + S  KYL +     +      RN+ K  +  
Sbjct: 85  YLRERPLLNANTTQNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATK 144

Query: 126 -------PRALNEKQALTLVDNVLLHTSHETKWIDA-------------------RNSAI 159
                   RA N KQ L L D     T    ++ID                    R+ AI
Sbjct: 145 KKKETLAARAENIKQKLFLGD----ETEEFLQYIDTKYPKKLSNRALSSFNKNKERDLAI 200

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP- 218
           + LL   G+R+SEA++L  ++I      + +  KG K   V +    +  + EY  +   
Sbjct: 201 IALLLASGVRLSEAVNLDLKDINLKMMVIEVTRKGGKRDSVNVAAFAKSYLEEYLSIRSK 260

Query: 219 -FDLNLNIQLPLFRGIRGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
            +              RG P  ++    ++ + +        +  T H LRH+ AT L  
Sbjct: 261 RYKAEKTDTAFFLTEYRGTPNRIDASSVEKMVAKYSE--SFKVRVTPHKLRHTLATRLYD 318

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGD 308
                  +   LGH     T +YT++     KN  D
Sbjct: 319 ATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|301308315|ref|ZP_07214269.1| integrase [Bacteroides sp. 20_3]
 gi|300833785|gb|EFK64401.1| integrase [Bacteroides sp. 20_3]
          Length = 406

 Score = 43.1 bits (100), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 69/153 (45%), Gaps = 20/153 (13%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVRKA 209
           AR + I   L   GL   + + L P +I    D +  +RI  K  KI   +PL P + + 
Sbjct: 240 ARRAFIFSTL--TGLAYVDIMLLHPHHIGTNADGRRYIRINRKKTKIEAFIPLHP-IAER 296

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           IL  Y+        + + P+F      PL N       I +L   +G   + + H  RHS
Sbjct: 297 ILSLYN------TTDDEHPVF------PLPNRDALWFEIHELGVIIGKEDNLSYHQSRHS 344

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           F T L+S+   + SI  ++GH  + TTQ Y  +
Sbjct: 345 FGTFLISSDIPIESIAKMMGHSNIRTTQGYARI 377


>gi|298483595|ref|ZP_07001770.1| integrase [Bacteroides sp. D22]
 gi|298270165|gb|EFI11751.1| integrase [Bacteroides sp. D22]
          Length = 281

 Score = 43.1 bits (100), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 3/75 (4%)

Query: 230 FRGIRGKPLNPGVFQRY---IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           F G+ GK       +     ++++ +   +    T H  RHS+AT  LS G  + +I   
Sbjct: 173 FAGLDGKVFRLCTIENADIQLKKIAKAANIEKRLTYHMARHSYATLCLSMGVPIETISQT 232

Query: 287 LGHFRLSTTQIYTNV 301
           LGH  +STTQIY ++
Sbjct: 233 LGHRSISTTQIYADI 247


>gi|262382327|ref|ZP_06075464.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262295205|gb|EEY83136.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 310

 Score = 43.1 bits (100), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           F   +++L    G+    T++++RHSFAT L   G  +  I  +LGH  + TTQIY
Sbjct: 227 FNSSLKELANACGVTEMVTSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIY 282


>gi|255012361|ref|ZP_05284487.1| integrase [Bacteroides sp. 2_1_7]
          Length = 310

 Score = 43.1 bits (100), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           F   +++L    G+    T++++RHSFAT L   G  +  I  +LGH  + TTQIY
Sbjct: 227 FNSSLKELANACGVTEMVTSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIY 282


>gi|153815404|ref|ZP_01968072.1| hypothetical protein RUMTOR_01638 [Ruminococcus torques ATCC 27756]
 gi|331089232|ref|ZP_08338134.1| hypothetical protein HMPREF1025_01717 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847263|gb|EDK24181.1| hypothetical protein RUMTOR_01638 [Ruminococcus torques ATCC 27756]
 gi|330405784|gb|EGG85313.1| hypothetical protein HMPREF1025_01717 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 140

 Score = 43.1 bits (100), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS-NGGDLRSIQSILGHFRLS 293
           G P+  G  +  +++L     LP     H+LRHS  T+ L  NGGD++++Q   GH R+ 
Sbjct: 6   GNPIGTGAIRGQLKKLIEEHNLP-PVVFHSLRHSSVTYKLKLNGGDIKAVQGDSGHSRVD 64

Query: 294 -TTQIYTNV 301
             T +Y+++
Sbjct: 65  MVTDVYSHI 73


>gi|119963826|ref|YP_947503.1| phage integrase family protein [Arthrobacter aurescens TC1]
 gi|119950685|gb|ABM09596.1| phage integrase family domain protein [Arthrobacter aurescens TC1]
          Length = 304

 Score = 43.1 bits (100), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 65/153 (42%), Gaps = 29/153 (18%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR--IVPLL--PSVRKAILEY 213
           AIL   +  GLRI EA++L   ++             D +R  I P +  P V     E 
Sbjct: 131 AILLAAF-AGLRIGEAVALRVSDV-------------DFMRGIITPAIQYPGVELKTEES 176

Query: 214 YDLCPFDLNLNIQLP----------LFRGIRGKPLNPGVFQRYIRQLRRYL-GLPLSTTA 262
            +  P   NL ++L           L     G+ ++P   + Y R  R  + GLP     
Sbjct: 177 KNPIPVPQNLCLELSVNHARWGSETLVTNEWGRSISPHRVEHYFRDARSSVKGLPEGFRF 236

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           H LRH FA+ L++ G D++ +Q  L H    TT
Sbjct: 237 HDLRHYFASLLIAQGLDVKVVQKSLRHSSAKTT 269


>gi|298378096|ref|ZP_06988038.1| site-specific recombinase IntIA [Bacteroides sp. 3_1_19]
 gi|298265001|gb|EFI06672.1| site-specific recombinase IntIA [Bacteroides sp. 3_1_19]
          Length = 310

 Score = 43.1 bits (100), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           F R ++ L+   G+    T++T+RHSFA  L      +  I  +LGH  + TTQIY
Sbjct: 227 FNRNLKTLKEVAGIVSDVTSYTIRHSFAMSLKEQNVPIEMISELLGHKSIKTTQIY 282


>gi|257899112|ref|ZP_05678765.1| phage integrase [Enterococcus faecium Com15]
 gi|257837024|gb|EEV62098.1| phage integrase [Enterococcus faecium Com15]
          Length = 379

 Score = 43.1 bits (100), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 30/163 (18%)

Query: 157 SAILYLLYGC-GLRISEALSLTPQNI-MDDQ---------------STLRIQGKGDKIRI 199
           S +L L+ G  G+R +E L LT ++I  +DQ                  + +    KI I
Sbjct: 192 SPMLVLVAGATGMRFAELLGLTWEDIDFEDQIITINKTWNYKLNEWGKTKNETSNRKISI 251

Query: 200 ----VPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRR 252
               + LL   +    E +D      N  ++ P   +F  ++   ++     +Y+R+  +
Sbjct: 252 DKHTIDLLKKFKINQKELFD------NFEVKNPHNFVFFNLKNGLVSSNAVSKYLRKKLK 305

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            LG+    T H LRH+ A+ LL  G ++ S+   LGH  L TT
Sbjct: 306 ELGIEKQFTLHGLRHTHASILLYQGVNILSVSKRLGHSSLETT 348


>gi|300775609|ref|ZP_07085470.1| phage integrase family site-specific recombinase [Chryseobacterium
           gleum ATCC 35910]
 gi|300505636|gb|EFK36773.1| phage integrase family site-specific recombinase [Chryseobacterium
           gleum ATCC 35910]
          Length = 384

 Score = 43.1 bits (100), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 15/165 (9%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRK 208
           ID        + Y  G+R  E L L   +I  +   +RI     K +  R VP+   V  
Sbjct: 208 IDYNYYVFYSIEYYLGIRPKEILLLKCGDINIEHKVIRIASEDSKDNSYRYVPIFEPVL- 266

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPL-----NPGVFQR--YIRQLRRYL--GLPLS 259
           ++L+  DL   D  L I  P   G R         NP   +R    R+ + Y+  GL ++
Sbjct: 267 SMLKKMDLRNKDYYL-IGRPKPYGCRFFKHEYFCPNPYPIKRDTATRKWKEYIIDGLGIN 325

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN-VNS 303
              ++ +H  A   L  G DL++I  I GH     T++Y N +NS
Sbjct: 326 VKCYSFKHKGANDKLKAGMDLKTISEIFGHSDEKITELYANHINS 370


>gi|153807337|ref|ZP_01960005.1| hypothetical protein BACCAC_01615 [Bacteroides caccae ATCC 43185]
 gi|149129699|gb|EDM20911.1| hypothetical protein BACCAC_01615 [Bacteroides caccae ATCC 43185]
          Length = 410

 Score = 43.1 bits (100), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           + ++++ R  G     + H  RH+ AT  LLSNG  + ++  +LGH  + TTQIY  + S
Sbjct: 326 KILKEIGRQCGFKTRLSTHVARHTNATTVLLSNGVPIETVSRLLGHTNIKTTQIYAKITS 385

Query: 304 K 304
           +
Sbjct: 386 Q 386


>gi|226944653|ref|YP_002799726.1| cointegrate resolution protein S [Azotobacter vinelandii DJ]
 gi|226719580|gb|ACO78751.1| cointegrate resolution protein S [Azotobacter vinelandii DJ]
          Length = 325

 Score = 43.1 bits (100), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 84/217 (38%), Gaps = 48/217 (22%)

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDA------------------RNSAILYLLYGCGLRI 170
           + EKQA  L    L H      W++A                  R+SA+L + +  G R 
Sbjct: 96  VREKQAAPLP---LQHLQQAVDWLNAEASAAEVRGDGASLLRCRRDSALLLIGFWRGFRS 152

Query: 171 SEALSLTPQNIMDDQST------LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
            E   L  + I             R +G  D +      P++++       LCP    L+
Sbjct: 153 DELCRLEVERIQAVAGVGMEIHLPRSKGDRDFLGTTHRAPALKR-------LCPVQAYLD 205

Query: 225 -IQL------PLFR------GIRGKPLNPGVFQRYIRQLRRYLGLPL-STTAHTLRHSFA 270
            I L      P+FR       +    LNP      +RQ+    G+P  S ++H+LR  FA
Sbjct: 206 WIALAGLTRGPVFRRLDRWGNLGADGLNPNSLIALLRQILERAGVPAESYSSHSLRRGFA 265

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           T   +NG DL+S+   +G   + +   Y +     GG
Sbjct: 266 TWAAANGWDLKSLMGYVGWKDVKSAMRYIDPTLSFGG 302


>gi|313156953|gb|EFR56386.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 407

 Score = 43.1 bits (100), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +R++ +  G+    T H  RH+FAT + LS G  + ++  +LGH  + TTQIY  + ++
Sbjct: 328 LREIGKQCGIKNKLTFHMARHTFATTITLSQGMPIETVSCLLGHTNIKTTQIYAKITNE 386


>gi|304384469|ref|ZP_07366869.1| integrase [Prevotella marshii DSM 16973]
 gi|304334441|gb|EFM00734.1| integrase [Prevotella marshii DSM 16973]
          Length = 306

 Score = 43.1 bits (100), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 64/150 (42%), Gaps = 11/150 (7%)

Query: 162 LLYGC--GLRISEALSLT---PQNIMDDQSTLRIQGKGDKIR-IVPLLPSVRKAILEYYD 215
            ++ C  GL I++   L     Q   D Q  +R + +  K+  IVPL P     I +  D
Sbjct: 134 FIFSCFTGLAIADMEHLQFGHIQTAADGQKYIRKERQKTKVEFIVPLHPIAEAIINQCKD 193

Query: 216 LCPFDLNLNIQLPLFRG---IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
             P      +Q    +G   I     +  V    +  + +  G+    + H  RH+F T 
Sbjct: 194 ERP--STKEMQTVKEKGDDFIFHCACSRSVMSAKLSIVGKACGIRERLSYHMARHTFGTM 251

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            LS G  + SI  ++GH  +S+TQIY  V 
Sbjct: 252 SLSAGIPIESIAKMMGHASISSTQIYAQVT 281


>gi|332882420|ref|ZP_08450047.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332679638|gb|EGJ52608.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 388

 Score = 43.1 bits (100), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R ++++    G+      H  RH++AT + LS+G  L ++  +LGH R+STTQIY + 
Sbjct: 326 RTLKRIAAICGIERKLVFHCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYASA 383


>gi|282878983|ref|ZP_06287747.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281298982|gb|EFA91387.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 404

 Score = 43.1 bits (100), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 66/153 (43%), Gaps = 20/153 (13%)

Query: 159 ILYLLYGCG-LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           I    Y CG +   +  +LTP NI+D +     Q    +I +  L+   +K I +Y   C
Sbjct: 242 IFTFSYYCGGISFVDVANLTPNNIVDGRLHYIRQKTNGEINLC-LMKEAQKIISKYEIQC 300

Query: 218 PFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL----------- 265
                L    P+    R   P+    F R +R++  Y+   L T A  L           
Sbjct: 301 HQSGYL---FPILNQKRHTTPMQK--FNR-VRKVIEYINRELHTIAKELNLKGDVTTYVA 354

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           RH+FAT L  +G D+  I   LGH  + TTQIY
Sbjct: 355 RHTFATVLRKSGVDIGIISQSLGHQDIQTTQIY 387


>gi|258517010|ref|YP_003193232.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257780715|gb|ACV64609.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 295

 Score = 43.1 bits (100), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 92/212 (43%), Gaps = 17/212 (8%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++K+SLS ++S+ ++L  + I  ++ +  +  +  + + P+ L   +  T++  V     
Sbjct: 71  TVKQSLSHLRSYFQFLVSQNIIPDNPVQFVATITTAKTTPKWLTRTEQNTIIRYV----- 125

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLL 203
              K+ D R   +  LL   GLR+ E   L   +I   +   ++   QGK D+ R +PL 
Sbjct: 126 --RKYGDLRELTMTTLLLHTGLRVQELADLRLVDIEIGERKGKVIVRQGKHDRHREIPLN 183

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
             VR  + +Y          +I   LF    G  +     Q  + + R+  G+      H
Sbjct: 184 ADVRHLLKKYL------TEYSISAYLFPSKTGDKMTTRNIQYIMEKYRKLTGID-HFNCH 236

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            LRH+F   L++    L  +  + GH R   T
Sbjct: 237 ALRHTFCHELVTRKISLDVVARLAGHMRTDGT 268


>gi|296164168|ref|ZP_06846774.1| tyrosine recombinase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295900480|gb|EFG79880.1| tyrosine recombinase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 350

 Score = 43.1 bits (100), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 21/161 (13%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR---------IQGKGDKIRIVPLLP 204
           AR+ A+   LY  GLR  E + L   ++   +              +G G + R VP+L 
Sbjct: 170 ARDYALFRTLYHAGLRSEEVVMLDRADVHFPRGPFGKLHVRFGKGAKGSGPRPRWVPMLD 229

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
            +   +  Y D      ++  + P    L     G  +     +  +R L    G P + 
Sbjct: 230 GLDLVLRWYLD------DVRGRFPDSPVLLCDESGGRMAAATIRNRLRHLMSVEGRPDAD 283

Query: 261 --TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
             + H +R + ATH    G DL +IQ +LGH+ +++T  Y 
Sbjct: 284 WFSPHGMRRACATHNYERGVDLVAIQQLLGHWTVASTMRYV 324


>gi|260590922|ref|ZP_05856380.1| integrase [Prevotella veroralis F0319]
 gi|260536787|gb|EEX19404.1| integrase [Prevotella veroralis F0319]
          Length = 434

 Score = 43.1 bits (100), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 29/53 (54%)

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +  G+    + H  RH+F T  LS G  + SI  ++GH  +S+TQIY  V  K
Sbjct: 339 KACGIKERLSFHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDK 391


>gi|224024656|ref|ZP_03643022.1| hypothetical protein BACCOPRO_01384 [Bacteroides coprophilus DSM
           18228]
 gi|224017878|gb|EEF75890.1| hypothetical protein BACCOPRO_01384 [Bacteroides coprophilus DSM
           18228]
          Length = 416

 Score = 43.1 bits (100), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 20/144 (13%)

Query: 167 GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVRKAILEYYDLCPFDLN 222
           GL   + + L P +I    D +  +RI  K   +   +PL P + + IL+ Y+       
Sbjct: 251 GLTYVDIMLLHPHHIGTTADGRRYIRINRKKTNVEAFIPLHP-IAEQILDLYN------T 303

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRY--IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
            +   P+F      PL P   + +  I +L   +G   + + H  RHSF T L+S G  +
Sbjct: 304 TDDTKPVF------PL-PSRDEMWFEIHELGVAIGRKENLSYHQSRHSFGTFLISEGIPI 356

Query: 281 RSIQSILGHFRLSTTQIYTNVNSK 304
            SI  ++GH  + TTQ Y  V  K
Sbjct: 357 ESIAKMMGHSGIRTTQRYAEVTDK 380


>gi|160890930|ref|ZP_02071933.1| hypothetical protein BACUNI_03375 [Bacteroides uniformis ATCC 8492]
 gi|255692284|ref|ZP_05415959.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|293369271|ref|ZP_06615860.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|294643197|ref|ZP_06721025.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294809319|ref|ZP_06768030.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298376855|ref|ZP_06986810.1| integrase [Bacteroides sp. 3_1_19]
 gi|301309523|ref|ZP_07215465.1| integrase [Bacteroides sp. 20_3]
 gi|332877314|ref|ZP_08445062.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|156859929|gb|EDO53360.1| hypothetical protein BACUNI_03375 [Bacteroides uniformis ATCC 8492]
 gi|260622016|gb|EEX44887.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|292635655|gb|EFF54158.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292641463|gb|EFF59653.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294443477|gb|EFG12233.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298266733|gb|EFI08391.1| integrase [Bacteroides sp. 3_1_19]
 gi|300832612|gb|EFK63240.1| integrase [Bacteroides sp. 20_3]
 gi|332684697|gb|EGJ57546.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 411

 Score = 43.1 bits (100), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 20/149 (13%)

Query: 160 LYLLYG-CGLRISEALSLTPQNI---MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYY 214
           LYL     GL  ++  +LT +NI    D+   + I + K   +  + LL   ++ I +Y 
Sbjct: 249 LYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRQKTGVVSNIRLLDIAKQIIDKYR 308

Query: 215 DLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            LC    N  I  +P +                IR + +  G+    T H  RH+ AT +
Sbjct: 309 GLCE---NGRIFPVPHYNTCLAG----------IRAVAKRCGITKHITWHQSRHTAATTV 355

Query: 274 -LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            LSNG  + ++ S+LGH  + TTQIY  +
Sbjct: 356 FLSNGVPIETVSSMLGHKSIKTTQIYAKI 384


>gi|298375390|ref|ZP_06985347.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_19]
 gi|298267890|gb|EFI09546.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_19]
          Length = 183

 Score = 43.1 bits (100), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 62/145 (42%), Gaps = 8/145 (5%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           + +   LR+S+   L  +N+++  S + I+ K  K R V L       I E Y L     
Sbjct: 39  IAFASALRVSDIRMLKWENVLNKNSIILIEKKTKKNREVRLNDETVSIIKELYTLMG--- 95

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-- 278
             ++   LF G + KP+      + ++ ++    L +   + H+ R +F  +L    G  
Sbjct: 96  KPSVNSYLFEGYKNKPMGIWQINKRLKDVKDRYNLSIDHFSTHSFRKTFGRYLYEANGRS 155

Query: 279 --DLRSIQSILGHFRLSTTQIYTNV 301
              L  ++ +L H  + TT  Y  +
Sbjct: 156 QESLMMLKEVLNHSNVGTTYTYIGI 180


>gi|295084504|emb|CBK66027.1| Site-specific recombinase XerC [Bacteroides xylanisolvens XB1A]
          Length = 368

 Score = 43.1 bits (100), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 106/248 (42%), Gaps = 23/248 (9%)

Query: 52  FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111
           ++T  K   +   +L+    R FI     +K+   +++  ++ I+ F K++KK     E 
Sbjct: 125 YHTSLKQYFEYANELNMDNCRRFIKSLEEEKLSPATIRLRITAIEKFSKWVKK---PIEL 181

Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
               M+     N++P    E++   L++ +      +TK ++      + +L   G R+S
Sbjct: 182 KRPKMKRKLDVNNVP---TEEEYNRLLEYL------KTK-LNKDYYFFIKVLGTTGARLS 231

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           E    T ++I   +  L+  GKG+K R       +++ + +Y         L +      
Sbjct: 232 EFQQFTWEDIAIGEVVLK--GKGNKYRRFFFQKQLQREVKDYIKETGKSGTLAVG----- 284

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             R  PL      ++++   ++ G+      AH  RH FA   L    D+  +  +LGH 
Sbjct: 285 --RFGPLTQRGLSQHLKVWGKHCGIDSKKMHAHAFRHFFAKMFLKKTKDVIQLADLLGHG 342

Query: 291 RLSTTQIY 298
            + TT+IY
Sbjct: 343 SVDTTRIY 350


>gi|294619699|ref|ZP_06699115.1| prophage Lp3 protein 1, integrase [Enterococcus faecium E1679]
 gi|291594082|gb|EFF25540.1| prophage Lp3 protein 1, integrase [Enterococcus faecium E1679]
          Length = 401

 Score = 43.1 bits (100), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 89/203 (43%), Gaps = 29/203 (14%)

Query: 124 SLPRALNEKQALTLVD-NVLLHTSHE-TKWIDA-RNSA-----ILYLLYGCGLRISEALS 175
           S+PR     +AL + D N+  +T  E  ++++A RN          LL   G+R  EA +
Sbjct: 170 SIPRG----EALDIEDKNIEFYTKEELIEFLEAIRNDDDERYLFFSLLAFTGIRKGEAFA 225

Query: 176 LTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPL 229
           LT  +I     TL I     +G + R++   P  +    + Y   DL        I+   
Sbjct: 226 LTWSDIDFKSKTLNINKTVTRGYQGRLIVNTPKSKSGKRKIYLDNDLISLLRKYYIKNKT 285

Query: 230 FRGIRGKPL---------NPGVFQRYIRQL-RRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
              I+ + L         NP V + ++  + + +  L    T H  RH+ A+ L  +G  
Sbjct: 286 IVTIQSENLIFHHDGLLYNPTVSRSWLNVIYKHHPELTKRITTHGFRHTHASLLFESGAS 345

Query: 280 LRSIQSILGHFRLSTT-QIYTNV 301
           L+ +Q  LGH  + TT  IYT+V
Sbjct: 346 LKDVQERLGHADIQTTSNIYTHV 368


>gi|239941212|ref|ZP_04693149.1| phage integrase family site specific recombinase [Streptomyces
           roseosporus NRRL 15998]
 gi|239941232|ref|ZP_04693169.1| phage integrase family site specific recombinase [Streptomyces
           roseosporus NRRL 15998]
 gi|239987688|ref|ZP_04708352.1| phage integrase family site specific recombinase [Streptomyces
           roseosporus NRRL 11379]
          Length = 324

 Score = 43.1 bits (100), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 76/186 (40%), Gaps = 24/186 (12%)

Query: 116 MRNLKKSNSLPRALNEKQALTLVD---NVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           MR +K     P  L E +   + D   + L      T + D R++A+L LL   G+R+SE
Sbjct: 117 MRTMK-----PPTLPEVEVPVIPDADLSKLFKACKGTTYADRRDTALLMLLLDTGVRLSE 171

Query: 173 ALSLTPQNIMD---DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC------PFDLNL 223
              LT + + D   D   L + GKG K R VP   +   A+  Y          P D   
Sbjct: 172 ---LTDRRVGDLDLDLKVLHVLGKGGKTRPVPFGNTCATALDRYLRAAAKHKGKPLD--- 225

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRS 282
           + ++ L+ G R K     ++       RR     +     H  RH+FA     NGG+   
Sbjct: 226 DDEMWLWWGHRNKGQRLTIWGVGTMLKRRCAQAGIGELHPHQFRHTFAHQWKVNGGNEDD 285

Query: 283 IQSILG 288
           +  I G
Sbjct: 286 LMRITG 291


>gi|150005630|ref|YP_001300374.1| integrase [Bacteroides vulgatus ATCC 8482]
 gi|149934054|gb|ABR40752.1| integrase [Bacteroides vulgatus ATCC 8482]
          Length = 404

 Score = 43.1 bits (100), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 33/58 (56%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           G   + ++ L   LG+  + T +  RHSFA+ L  +G ++  I   LGH  L+TTQIY
Sbjct: 330 GKVNKNLKLLAAQLGVEANLTTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIY 387


>gi|27365771|ref|NP_761299.1| Integrase [Vibrio vulnificus CMCP6]
 gi|27361920|gb|AAO10826.1| Integrase [Vibrio vulnificus CMCP6]
          Length = 402

 Score = 43.1 bits (100), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 70/146 (47%), Gaps = 13/146 (8%)

Query: 159 ILYLLYGCGLRISEALSLTPQNI-MDDQS-TLRIQ-GKGDKIRIVPLLPSVRKAILEYYD 215
           ++ L    G+R  E LSL   +I M+D+  T+R +  K    R +PL  +V   +  +++
Sbjct: 254 LIVLALNTGMRKGEMLSLKWSHINMEDRYLTIRSENAKSKNKRTIPLNNTVYTMLQAWHE 313

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
             P     + +L   R   GKPL+   +Q     L +  G+  +   H LRH FA+ L+ 
Sbjct: 314 QNP-----DTELVFERN--GKPLDS--YQYQWESLLKDAGIE-NFRFHDLRHHFASKLVM 363

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNV 301
              DL  ++ +LGH  L  T  Y ++
Sbjct: 364 KEADLNVVRELLGHADLKMTLRYAHL 389


>gi|325268703|ref|ZP_08135332.1| integrase [Prevotella multiformis DSM 16608]
 gi|324988947|gb|EGC20901.1| integrase [Prevotella multiformis DSM 16608]
          Length = 306

 Score = 43.1 bits (100), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 3/58 (5%)

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           QLR  + +PL  TAH  RH+FAT + L NG  + ++  +LGH ++ TT+ Y  V  K 
Sbjct: 232 QLRAGIAIPL--TAHIGRHTFATLITLENGVPIETVSKMLGHSKIETTERYAYVTPKK 287


>gi|323484551|ref|ZP_08089916.1| site-specific DNA tyrosine recombinase [Clostridium symbiosum
           WAL-14163]
 gi|323402129|gb|EGA94462.1| site-specific DNA tyrosine recombinase [Clostridium symbiosum
           WAL-14163]
          Length = 280

 Score = 43.1 bits (100), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 9/145 (6%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R   I+  +   G+RISE + +T  ++    +    +GK  +I     LP   + +L  Y
Sbjct: 125 RIGLIIQTICSTGIRISELIYITVDSVHTGVAYATCKGKSRQI----FLPHKLRMLLMKY 180

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLSTTAHTLRHSFATHL 273
                  N   Q P+F    GKP+N     + ++ L      L +    H LRH FA   
Sbjct: 181 ----IRQNQIRQGPVFLTREGKPVNRSNVWKEMKALCASARVLAVKVFPHNLRHLFARTY 236

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIY 298
                D+  +  +LGH  ++TT+IY
Sbjct: 237 YRMEKDISKLADLLGHSSINTTRIY 261


>gi|198277318|ref|ZP_03209849.1| hypothetical protein BACPLE_03530 [Bacteroides plebeius DSM 17135]
 gi|198269816|gb|EDY94086.1| hypothetical protein BACPLE_03530 [Bacteroides plebeius DSM 17135]
          Length = 388

 Score = 43.1 bits (100), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R ++++    G+      H  RH++AT + LS+G  L ++  +LGH R+STTQIY + 
Sbjct: 326 RTLKRIAAICGIERKLVFHCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYASA 383


>gi|188590125|ref|YP_001921119.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E3 str. Alaska E43]
 gi|188500406|gb|ACD53542.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 194

 Score = 43.1 bits (100), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 13/178 (7%)

Query: 130 NEKQALTLVDNVL-LHTSHETKWIDARNSAILYLL-YGCGLRISEALSLTPQNIMDDQS- 186
           NE +A+  V+ ++ +     T    A  + I++L+    GLRI + LSL  +++ + +  
Sbjct: 3   NEMEAIKDVNAIMDIADFFRTTGKHAERNYIMFLIGIYTGLRIGDILSLRVRDVKEAKYI 62

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
            L+ +    K +I+  +    KA LE Y  D   F+  +  Q    +G R KP+      
Sbjct: 63  ELKAEKTDKKTKII--INDYLKAELEEYIKDKKEFEYLIKSQ----KG-RNKPIGKTQAW 115

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           R +++     GL  +   HTLR +F        GD+ ++++I GH  +S T  Y  +N
Sbjct: 116 REMKKAANEFGLD-NIGCHTLRKTFGYFFYQQYGDIVTLKNIFGHSDISVTFKYIGLN 172


>gi|332360892|gb|EGJ38698.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK49]
          Length = 357

 Score = 43.1 bits (100), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 109/281 (38%), Gaps = 51/281 (18%)

Query: 68  YTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL- 125
           Y   R  ++   TQ  +   ++ R+LS + S  KYL +     +      RN+ K  S  
Sbjct: 86  YLRERPLLNANTTQNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVSTK 145

Query: 126 -------PRALNEKQALTLVDNV---LLHTSHE------TKWIDA------RNSAILYLL 163
                   RA N KQ L L D     LL+   E       + + +      R+ AI+ LL
Sbjct: 146 KKKETLAARAENIKQKLFLGDETEEFLLYIDREYPKKLSNRALSSFNKNKERDLAIIALL 205

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
              G+R+SEA++L  ++I      + +  KG K   V +    +  + EY         L
Sbjct: 206 LASGVRLSEAVNLDLKDINLKMMVIEVTRKGGKRDSVNVAAFAKPYLEEY---------L 256

Query: 224 NIQLPLFRG-----------IRGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           NI+   ++             RG P  ++    ++ + +        +  T H LRH+ A
Sbjct: 257 NIRSKRYKAEKTDTAFFLTEYRGSPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLA 314

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGD 308
           T L         +   LGH     T +YT++     KN  D
Sbjct: 315 TRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 355


>gi|315644195|ref|ZP_07897365.1| phage integrase family protein [Paenibacillus vortex V453]
 gi|315280570|gb|EFU43859.1| phage integrase family protein [Paenibacillus vortex V453]
          Length = 312

 Score = 43.1 bits (100), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 5/148 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           R+  ++YL+   GLR  E L+L   +I+     Q  +  +GKG     + L  +  +  +
Sbjct: 149 RDRCMIYLMLYLGLRQEEMLNLELTDIIRTPGKQKVIIREGKGGFYGELALESTELRGAI 208

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           + +              LF   +          + I+++ +  G+    T H LRH+FA 
Sbjct: 209 DQWIAERAKSRFADSSYLFVSRKSAHAGKRAAVKMIKRVCKTSGVEF--TCHQLRHTFAK 266

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            ++   G+++  Q +L H   S+T+IYT
Sbjct: 267 RIIDETGNIKKAQELLRHKHTSSTEIYT 294


>gi|310287230|ref|YP_003938488.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum
           S17]
 gi|309251166|gb|ADO52914.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum
           S17]
          Length = 377

 Score = 43.1 bits (100), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 91/224 (40%), Gaps = 41/224 (18%)

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL----YGCGLRISEALSL 176
           +SN   RA  E   +   +  +L  +   + I+A N  + +L+    Y  G+R  E L L
Sbjct: 131 ESNPCDRA--ESPRVVYTERKILTPAQAGQLINAENDVMWHLMWRLAYETGMRQGERLGL 188

Query: 177 TPQNI--MDD------QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN---I 225
           T   I  +D+      +  L++       R +P     R  + + Y L P   N     I
Sbjct: 189 TNSEIQLIDNVICIVVEWQLKVYNNVKDARDIPSSLGARHVMGKAY-LVPPKTNAGRRVI 247

Query: 226 QLP----------------------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
            LP                      +F    G PLN  +  R  ++  + +GLP     H
Sbjct: 248 PLPESLAAELGLYIKGTGRVKPDDLVFVQEDGAPLNRMIETRAWKKALQRVGLPGDFVPH 307

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNG 306
           + RH+ AT +   G   +  +SI+GH  +S T ++YT+V + + 
Sbjct: 308 SARHTAATAMAQLGMSDKVRESIMGHSDISVTNRVYTHVGTADA 351


>gi|295086152|emb|CBK67675.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 410

 Score = 43.1 bits (100), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYT 299
           G   + ++++ R  G  +  T H  RH+ AT  LLS+G  + ++  +LGH  + TTQIY 
Sbjct: 322 GSCNKILKEIGRQCGFKVRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYA 381

Query: 300 NVNSK 304
            + ++
Sbjct: 382 KITAQ 386


>gi|270294783|ref|ZP_06200984.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274030|gb|EFA19891.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 407

 Score = 43.1 bits (100), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 33/58 (56%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           ++++ +  G+    + H  RH FAT  LS G  + S+  +LGH  ++TTQ Y  + ++
Sbjct: 326 LKKMIKECGISKDISFHCTRHGFATLALSKGVPIESVSRVLGHTNITTTQKYAKITTE 383


>gi|255016624|ref|ZP_05288750.1| integrase / site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 198

 Score = 43.1 bits (100), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           F R ++ L+   G+    T++T+RHSFA  L      +  I  +LGH  + TTQIY
Sbjct: 115 FNRNLKTLKEVAGIVSDVTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIY 170


>gi|237736397|ref|ZP_04566878.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Fusobacterium
           mortiferum ATCC 9817]
 gi|229421439|gb|EEO36486.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Fusobacterium
           mortiferum ATCC 9817]
          Length = 255

 Score = 43.1 bits (100), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 74/147 (50%), Gaps = 13/147 (8%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
             IL ++Y  G RI E L L  +NI  ++   T  ++ +  K R+VP+ P +   I + Y
Sbjct: 105 DTILIMIYS-GFRIGELLELETKNIDLVNMTMTGGLKTEAGKNRLVPIHPKIFPLIEKRY 163

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           +     L +N     F+G + K  N    +++I  + +   L +    H  RH+FAT L 
Sbjct: 164 NKDNQYLIIN-----FKGKKMKYDNY-YKEKFIPIMEQ---LNMEHRPHDCRHTFATLLS 214

Query: 275 SNGGDLRSIQSILGHFRLSTTQ-IYTN 300
           +   +  +I+ ++GH   +TT+ IYT+
Sbjct: 215 NANANATAIKKMIGHESYATTEKIYTH 241


>gi|23012392|ref|ZP_00052489.1| COG4974: Site-specific recombinase XerD [Magnetospirillum
           magnetotacticum MS-1]
          Length = 127

 Score = 43.1 bits (100), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 52/107 (48%), Gaps = 15/107 (14%)

Query: 197 IRIVPLLPSVRKAILE-YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           +R VP+ P    AIL+  +DL P +  L    P+ R           +QR ++ + R  G
Sbjct: 21  VRDVPV-PEGVMAILDLVHDLDPSERRL---WPIGRST--------AWQR-VKAVMREAG 67

Query: 256 LPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  S  +   LRH F  H L +G  L  +Q  LGH  LSTT IY +V
Sbjct: 68  VGASAASPKGLRHGFGVHALRSGVPLTLLQRWLGHASLSTTAIYADV 114


>gi|330995439|ref|ZP_08319345.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329575584|gb|EGG57119.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 411

 Score = 43.1 bits (100), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 20/152 (13%)

Query: 160 LYLLYG-CGLRISEALSLTPQNI---MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYY 214
           LYL     GL  S+  +LT +NI    D+   + I + K   +  + LL    + I +Y 
Sbjct: 249 LYLFCAFTGLSFSDMRNLTEENIRTYFDEHEWININRQKTGVVSNIRLLDIANRIIGKYR 308

Query: 215 DLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            LC    N  I  +P +                IR + +  G+    T H  RH+ AT +
Sbjct: 309 GLCE---NGRIFPVPHYNTCLAG----------IRAVAKRCGITKHITWHQSRHTAATTV 355

Query: 274 -LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            LSNG  + ++ S+LGH  + TTQIY  +  +
Sbjct: 356 FLSNGVPIETVSSMLGHKSIKTTQIYAKITKE 387


>gi|307319488|ref|ZP_07598915.1| integrase family protein [Sinorhizobium meliloti AK83]
 gi|306894860|gb|EFN25619.1| integrase family protein [Sinorhizobium meliloti AK83]
          Length = 362

 Score = 43.1 bits (100), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 22/142 (15%)

Query: 158 AILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
           A +  L+G G RISE LS+  ++   +D +  +    K  K R+V L P V  A      
Sbjct: 188 AFVTFLFGQGSRISETLSIDGRDDISLDHRYAILRDTKSGKERMVNLCPRVIAA------ 241

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNP--------GVFQRYIRQLRRYLGLPLST-TAHTLR 266
            C    NL  + PLF    G+P           G + R + ++    GL  +  T HT R
Sbjct: 242 -CSTLPNLGQRGPLFLRYDGRPYAKKEDRGYRFGFWNRAVTEI----GLDATVYTPHTAR 296

Query: 267 HSFATHLLSNGGDLRSIQSILG 288
           HS+AT   S   D+  +++  G
Sbjct: 297 HSWATWFYSQTKDVVRLKAEGG 318


>gi|237711307|ref|ZP_04541788.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|325299619|ref|YP_004259536.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|229454002|gb|EEO59723.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|324319172|gb|ADY37063.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 411

 Score = 43.1 bits (100), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 20/152 (13%)

Query: 160 LYLLYG-CGLRISEALSLTPQNI---MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYY 214
           LYL     GL  S+  +LT +NI    D+   + I + K   +  + LL    + I +Y 
Sbjct: 249 LYLFCAFTGLSFSDMRNLTEENIRTYFDEHEWININRQKTGVVSNIRLLDIANRIIGKYR 308

Query: 215 DLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            LC    N  I  +P +                IR + +  G+    T H  RH+ AT +
Sbjct: 309 GLCE---NGRIFPVPHYNTCLAG----------IRAVAKRCGITKHITWHQSRHTAATTV 355

Query: 274 -LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            LSNG  + ++ S+LGH  + TTQIY  +  +
Sbjct: 356 FLSNGVPIETVSSMLGHKSIKTTQIYAKITKE 387


>gi|111024894|ref|YP_707314.1| integrase/recombinase [Rhodococcus jostii RHA1]
 gi|110823873|gb|ABG99156.1| probable integrase/recombinase [Rhodococcus jostii RHA1]
          Length = 399

 Score = 43.1 bits (100), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 21/161 (13%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQ-GKGDKI-----RIVPLLP 204
           AR+ A+   LY  GLR  EA  L   ++   Q     L ++ GKG +      R VP+L 
Sbjct: 216 ARDYALFRTLYHAGLRSDEASKLEIADVYFGQGPFGKLHVRFGKGARTSGPRPRWVPMLD 275

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLR--RYLGLPL 258
            +   +  Y +      ++  +LP    LF    G  +  G  +  +R L+   +     
Sbjct: 276 HLDLVVRWYLE------DVRPKLPESAVLFCDQSGGAMARGTIRNRLRYLQDLEHCSPAD 329

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
             + H LR + ATH    G DL +IQ +LGH+ + +T  Y 
Sbjct: 330 RFSPHALRRACATHNYERGVDLVAIQQMLGHWTVGSTMRYV 370


>gi|168485626|ref|ZP_02710134.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC1087-00]
 gi|183571275|gb|EDT91803.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC1087-00]
          Length = 265

 Score = 43.1 bits (100), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 8/141 (5%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +++ L   G R+SE + L  +++  +     I  KG KIR + +   +R + L +     
Sbjct: 114 VVWFLGATGARVSELIKLKVEHV--EIGYFDIYSKGGKIRRLYIPKKLRNSCLSW----- 166

Query: 219 FDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            +        LF     +P+   GV Q+      +Y   P     H+ RH FA + L+  
Sbjct: 167 LESENRRSGYLFLNKFNEPITARGVAQQLKNYADKYKMNPKVIYPHSFRHLFAKNFLAKY 226

Query: 278 GDLRSIQSILGHFRLSTTQIY 298
            D+  +  ++GH  + TT+IY
Sbjct: 227 NDIALLADLMGHESIETTRIY 247


>gi|167752976|ref|ZP_02425103.1| hypothetical protein ALIPUT_01239 [Alistipes putredinis DSM 17216]
 gi|167659290|gb|EDS03420.1| hypothetical protein ALIPUT_01239 [Alistipes putredinis DSM 17216]
          Length = 415

 Score = 43.1 bits (100), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNV-NSK 304
           +++L R  G  +  T H  RH+ AT  LLS+G  + ++  +LGH  L TTQIY  + N K
Sbjct: 333 LKELGRQCGFKIRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQK 392

Query: 305 NGGDWMMEI 313
              D  ME+
Sbjct: 393 ISSD--MEV 399


>gi|111026169|ref|YP_708452.1| integrase/recombinase [Rhodococcus jostii RHA1]
 gi|110825012|gb|ABH00294.1| probable integrase/recombinase [Rhodococcus jostii RHA1]
          Length = 203

 Score = 43.1 bits (100), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 73/181 (40%), Gaps = 16/181 (8%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS---KRRTQKIGDR 86
           G S+ T  +Y    R  L F A       T   I  L      AF+S   + R   I  R
Sbjct: 21  GASEHTTAAYRDTWRLLLAFTAERLGAAPTALDIADLDAPHSSAFLSHLERERGNSIRTR 80

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD----NVL 142
           +++  L+ I S   +   R+   E   L  R L    ++P    E+  LT +       L
Sbjct: 81  NMR--LAAIHSTFTFAALRQ--PEHVELIARVL----AIPPKRYERSQLTFLTPPQVAAL 132

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVP 201
           L     T W   R+ A++ L    GLR SE   LT  ++ +   + LR  GKG K R  P
Sbjct: 133 LAAPDRTSWTGRRDHALIQLALTTGLRASEITGLTRGDLHLGAGAHLRCHGKGRKDRTTP 192

Query: 202 L 202
           L
Sbjct: 193 L 193


>gi|90580686|ref|ZP_01236490.1| Tn554, transposase B [Vibrio angustum S14]
 gi|90438143|gb|EAS63330.1| Tn554, transposase B [Vibrio angustum S14]
          Length = 481

 Score = 43.1 bits (100), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 76/203 (37%), Gaps = 30/203 (14%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K   SLPR + E         V+   +H     +     +L +L  CG+RISE  +L   
Sbjct: 153 KMPKSLPRFIPE--------TVMTQLNHNIDKFEPTIMRLLLVLQECGMRISEIATLKRD 204

Query: 180 NIMDDQSTLRI----QGKGDKIRIVPLLPSVRKAILE---YYDLCPFDLNLNIQLPLFRG 232
            ++ D          Q K +K   +P+     + I+E   + D C +  +     P+ R 
Sbjct: 205 CLISDSDGDYFLKTQQSKMNKEHSIPISQETYQVIMEQLRHVDDC-YGRSCEWVFPMERV 263

Query: 233 IRGKPLNPGVFQRY--------------IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
            R    N G  + Y              I  +    G     T H  RH+  T +++NG 
Sbjct: 264 NRYGRRNSGASKPYKTRTIIDHLNNVAKIAHITGDNGQVFHFTTHMFRHTVGTRMINNGV 323

Query: 279 DLRSIQSILGHFRLSTTQIYTNV 301
               +Q  LGH   + T  Y +V
Sbjct: 324 PQHIVQRYLGHESPNMTSTYAHV 346


>gi|311068415|ref|YP_003973338.1| putative bacteriophage integrase [Bacillus atrophaeus 1942]
 gi|310868932|gb|ADP32407.1| putative bacteriophage integrase [Bacillus atrophaeus 1942]
          Length = 181

 Score = 43.1 bits (100), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 8/138 (5%)

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
             LRIS+ L L  +++ +       + K  K R + +L S++  I  Y        ++  
Sbjct: 37  SALRISDILPLKVKDVRNKDHLWATESKTKKKRKILILESLKAEIYAY------TRDMKE 90

Query: 226 QLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
              LF+ IR  KP++     R +++     GL    T HTLR +F  H      D+  +Q
Sbjct: 91  HEYLFKSIRTNKPISRIQAYRILKEAAAACGLEEIGT-HTLRKTFGYHFYQRTKDIAELQ 149

Query: 285 SILGHFRLSTTQIYTNVN 302
            IL H   S T  Y  ++
Sbjct: 150 RILNHSSPSITMRYIGID 167


>gi|126661524|ref|ZP_01732572.1| Phage integrase [Cyanothece sp. CCY0110]
 gi|126617190|gb|EAZ88011.1| Phage integrase [Cyanothece sp. CCY0110]
          Length = 320

 Score = 43.1 bits (100), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 5/161 (3%)

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRI 199
            LL T  E   +D R++AI+ +L G G+R SE + L  ++       + + +GK  K R 
Sbjct: 142 ALLGTCGEDSVMDVRDAAIMVMLRGTGIRRSELVKLELRDFESSTGEVLVRKGKRGKSRR 201

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG--IRGKPLNPGVFQRYIRQLRRYLGLP 257
           V  LP    + ++ +     + +  +   + RG  ++   ++     R I++  +  G+ 
Sbjct: 202 V-YLPEEAISYIQRWLGVRGEESGCLFCRIHRGGHLKLGQMHSDTVWRIIQKRAKMAGIE 260

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            S + H  R +F + LL  G D+ ++Q + GH    TT  Y
Sbjct: 261 -SFSPHDFRRTFCSDLLDAGVDIVTVQKLAGHSSPVTTAKY 300


>gi|116333459|ref|YP_794986.1| site-specific tyrosine recombinase XerS [Lactobacillus brevis ATCC
           367]
 gi|116098806|gb|ABJ63955.1| tyrosine recombinase XerC subunit [Lactobacillus brevis ATCC 367]
          Length = 354

 Score = 43.1 bits (100), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 98/244 (40%), Gaps = 33/244 (13%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK---QALTLVDNVLL 143
           ++ RSL+ + S  KYL +            RN+    +L R  NE    +A  L   ++L
Sbjct: 103 TINRSLNALSSLFKYLTEDTEDEHGEAYFNRNVMHKIALVRT-NETYATRAANLKTKLML 161

Query: 144 -HTSH----------ETKWIDA----------RNSAILYLLYGCGLRISEALSLTPQNIM 182
            HT H          ETK   A          R+ AI  LL G GLR+SEA +   +++ 
Sbjct: 162 GHTDHDYLDFIDQQYETKLSPAQKRYFHRDKQRDLAINALLLGSGLRVSEAANADLRHLN 221

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-----LPLFRGIRGKP 237
               T+ +  KG +   VP+ P     I  Y D      +   Q     L  +RG     
Sbjct: 222 LKTGTIGVIRKGGQRDTVPIAPWTLPYIQAYVDQRQATYHATNQDRALFLSSYRG-HASR 280

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +     ++ + +        +  T H LRH+ A+ L     + + + + LG    S T +
Sbjct: 281 MQANSMEKMVAKYSS--AFKVRITPHKLRHTLASKLYLATKNEQLVATQLGQNSTSATGL 338

Query: 298 YTNV 301
           YT++
Sbjct: 339 YTHI 342


>gi|58616553|ref|YP_195683.1| putative integrase [Azoarcus sp. EbN1]
 gi|56316016|emb|CAI10659.1| putative integrase [Aromatoleum aromaticum EbN1]
          Length = 406

 Score = 43.1 bits (100), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 28/46 (60%)

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + +AH LRH+ ATHLL +G  L   +  L H  + TT+IY + N +
Sbjct: 320 AASAHWLRHTAATHLLQDGASLLHTRDALRHASVQTTEIYISTNQR 365


>gi|332876677|ref|ZP_08444436.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332685382|gb|EGJ58220.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 219

 Score = 42.7 bits (99), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 14/140 (10%)

Query: 167 GLRISEALSLTPQNIMDDQS----TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           GL   +   L+P++I++D +      + + K   +  +PLL  +   IL  Y   P    
Sbjct: 69  GLAFIDVQQLSPEHIVEDANGNLWIRKTRQKTKNMCNIPLL-DIPLEILRKYANHPICQK 127

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLR 281
             + LP+       P N  +   Y++++     +    T HT RHS+AT + L+NG  + 
Sbjct: 128 KKVLLPV-------PCNQKM-NSYLKEIADLCLINKHLTTHTARHSYATSVCLANGVSIE 179

Query: 282 SIQSILGHFRLSTTQIYTNV 301
           ++  +LGH  +  TQ Y  V
Sbjct: 180 NVAKMLGHSNIKMTQHYARV 199


>gi|313158622|gb|EFR58015.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 411

 Score = 42.7 bits (99), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNV-NSK 304
           +++L R  G  +  T H  RH+ AT  LLS+G  + ++  +LGH  L TTQIY  + N K
Sbjct: 329 LKELGRQCGFKIRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQK 388

Query: 305 NGGDWMMEI 313
              D  ME+
Sbjct: 389 ISSD--MEV 395


>gi|291548984|emb|CBL25246.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 397

 Score = 42.7 bits (99), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 84/194 (43%), Gaps = 33/194 (17%)

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI------ 181
           AL E+Q   L+  +     +   + D      + +L   GLRISE   LT  +I      
Sbjct: 190 ALTEEQEQALLSFIKTDNVYHNHYDD------VLILLKTGLRISELCGLTVADIDFKNEV 243

Query: 182 -MDDQSTLRIQGKG---------DKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQL 227
            + D   L+ + +G           IR VPL    + + ++ + +     PF ++     
Sbjct: 244 VIIDHQLLKSKEQGYYIETPKTKSGIRQVPLSRETIQAFQQVMKKRPKAEPFVIDGQSNF 303

Query: 228 PLFRGIRGKPLNP----GVFQRYIRQL-RRYLGLPLS-TTAHTLRHSFATHLLSNGGDLR 281
            LF   +GKP        +F R +++  + +   PL   T HTLRH+F T L S   + +
Sbjct: 304 -LFVNHKGKPKVAIDYNALFVRMVKKYNKHHKDNPLPHITPHTLRHTFCTRLASKNMNPK 362

Query: 282 SIQSILGHFRLSTT 295
            +Q I+GH  +S T
Sbjct: 363 DLQYIMGHSNISIT 376


>gi|291515621|emb|CBK64831.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 410

 Score = 42.7 bits (99), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYT 299
           G   + ++++ R  G  +  T H  RH+ AT  LLS+G  + ++  +LGH  + TTQIY 
Sbjct: 322 GSCNKILKEIGRQCGFKVRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYA 381

Query: 300 NVNSK 304
            + ++
Sbjct: 382 KITAQ 386


>gi|227500720|ref|ZP_03930769.1| integrase [Anaerococcus tetradius ATCC 35098]
 gi|227217178|gb|EEI82527.1| integrase [Anaerococcus tetradius ATCC 35098]
          Length = 380

 Score = 42.7 bits (99), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 85/199 (42%), Gaps = 43/199 (21%)

Query: 128 ALNEKQALTLVDNVLLHTSHE-TKWIDA-----RNSAILYLLYGCGLRISEALSLTPQN- 180
           ++ EK+A    D +L  T  E  ++I+A      +     LLY CGLR+ E L+LT +  
Sbjct: 166 SMGEKEA----DEMLFWTQDEYERFIEAIKDKPESFYAFELLYWCGLRMGELLALTKEKF 221

Query: 181 ------IMDDQSTLRIQGKG--------DKIR--IVP--LLPSVRKAILEYYDLCPFDLN 222
                 +  D+S  RI GK           IR  ++P  L   +++ I  +Y + P DL 
Sbjct: 222 DFKKHTLKIDESLQRIDGKNVITAPKTKKSIRTIVMPEFLTDEIKEYIDSFYKIKPKDLI 281

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
            N      +      ++ G  +  ++++R           H LRHS  + L+  G    +
Sbjct: 282 FNFS----KSYLHHEMDRGSKKSQVKRIR----------IHDLRHSHVSLLIELGFSATA 327

Query: 283 IQSILGHFRLSTTQIYTNV 301
           I   +GH  +  T  Y ++
Sbjct: 328 IADRVGHESIDITYRYAHL 346


>gi|296163435|ref|ZP_06846188.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886323|gb|EFG66188.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 392

 Score = 42.7 bits (99), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 63/168 (37%), Gaps = 21/168 (12%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAILE 212
           R+  ++ LLY   LR+SEA      +    +    L + GKG     VP+  ++      
Sbjct: 200 RSRWLIRLLYHTALRVSEAAHAKAADFYQRRGKWWLHVVGKGGAEGEVPVGDALMADFAR 259

Query: 213 Y---YDLCPFDLNLNIQLPLFRGIRG---KPLNPGVFQRYIRQLRRYLGLPLST------ 260
           Y   + L P         P    I G   + L P      +R + R     L        
Sbjct: 260 YRAFHGLSPVPAASETG-PAVMSIAGDDARHLTPAAIYLIVRDVFRRAADALDAIDPIGA 318

Query: 261 ------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                 + H LRHS A+H    G DLR IQ  L H  + TT IY +  
Sbjct: 319 TTLRRASTHWLRHSAASHQADAGTDLRFIQKNLRHASIETTGIYLHAE 366


>gi|260592905|ref|ZP_05858363.1| putative integrase [Prevotella veroralis F0319]
 gi|260535105|gb|EEX17722.1| putative integrase [Prevotella veroralis F0319]
          Length = 417

 Score = 42.7 bits (99), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 28/165 (16%)

Query: 167 GLRISEALSLTPQNIM---DDQSTLRIQGKGDKIR-IVPLLPSVRKAILEYY------DL 216
           GL   +   L P++I+   D    +RI+ +   +  I+PLLP + K IL  Y      D 
Sbjct: 257 GLARVDMQRLKPKHIIRNADGTEEIRIKRQKTNVEAIIPLLP-IAKQILSLYIKGKKADD 315

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LS 275
             F  NL I+   F  +     N G   R  + L          T H  RH+F+T + LS
Sbjct: 316 LIFP-NLTIRKASFACV-----NIGQICRIEKGL----------TFHMARHTFSTTICLS 359

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           NG  + ++  +LGH  + TTQIY  +      + M  +  + H +
Sbjct: 360 NGISMETLSKMLGHSNIGTTQIYGKITDHKIQEDMTALTHREHST 404


>gi|225377375|ref|ZP_03754596.1| hypothetical protein ROSEINA2194_03023 [Roseburia inulinivorans DSM
           16841]
 gi|225210776|gb|EEG93130.1| hypothetical protein ROSEINA2194_03023 [Roseburia inulinivorans DSM
           16841]
          Length = 404

 Score = 42.7 bits (99), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 70/165 (42%), Gaps = 2/165 (1%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIV 200
           +L++   +  I  RN AI  +    G+R S+  +LT  NI  DD+     Q K      +
Sbjct: 229 ILNSVDRSNPIGKRNYAIFLIAARLGIRSSDIRTLTFSNINWDDKLISFCQQKTGHALSL 288

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG-VFQRYIRQLRRYLGLPLS 259
           PL   V  AI++Y      + N+           G+  + G V  R +R           
Sbjct: 289 PLPDDVGWAIIDYLKNGRPETNVKNIFVSHMYPYGELHSLGNVIPRQMRTAGINTPANKR 348

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           T  H  RH  AT +L N   L  I   LGH  +S+T++Y  ++ K
Sbjct: 349 TGMHAFRHGLATRMLENDVSLPVISQTLGHADISSTEVYLRISIK 393


>gi|197104955|ref|YP_002130332.1| Site-specific recombinase XerD [Phenylobacterium zucineum HLK1]
 gi|196478375|gb|ACG77903.1| Site-specific recombinase XerD [Phenylobacterium zucineum HLK1]
          Length = 440

 Score = 42.7 bits (99), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 33/146 (22%)

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP- 240
           +D  S +R++  G  + +  L P  R  ++    LC  D        L+    G+P+ P 
Sbjct: 275 IDPGSRVRLR-DGGSVSMDALTPDERGRLV----LCAEDGAPAEPAALWLTEVGQPVRPN 329

Query: 241 ---GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN--------------------- 276
               VF R  R+     G P+  + H LRH+FA H+L+                      
Sbjct: 330 SWEAVFARASRRCAE-AGRPIRISPHQLRHTFAVHMLAMLIQHRLAEASPSAGPMAGYRE 388

Query: 277 --GGDLRSIQSILGHFRLSTTQIYTN 300
             G  L+ +Q +LGH  L+TT IY +
Sbjct: 389 LLGDPLQQVQRLLGHASLATTYIYLD 414


>gi|217959653|ref|YP_002338205.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus cereus AH187]
 gi|217067025|gb|ACJ81275.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus cereus AH187]
          Length = 319

 Score = 42.7 bits (99), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 128/294 (43%), Gaps = 23/294 (7%)

Query: 16  KERQNWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +E +N +++  IE+   G +  TLQ Y  D R  L  +  + E K  I   R+    +IR
Sbjct: 16  QENKNLVKDFLIEKKAQGKAASTLQQYHWDLRIILFLIHQHFENKKLIDLTRK----DIR 71

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILN-MRNLKKSNSLP-RAL 129
                 +  ++ +  +   +S ++S L++         E N+ + +R L K+       +
Sbjct: 72  NLSIIFQEMEMSNARVNGLMSALRSTLEFCADDDDYDYEFNVGSRVRGLPKNPVREITFI 131

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +E+Q   L+D +L     + K+I A     L L Y    R +E   +  + + +   T  
Sbjct: 132 SEEQIEWLIDELL----KQEKYILA---TYLALSYYSAARKNEVYQVQKEELTERYFTNV 184

Query: 190 IQGK-GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           ++GK G K R+    P V+K I  Y +    D   ++ + +++    + LN  VF  + +
Sbjct: 185 VRGKRGKKFRLY-YNPRVQKCIRLYINQRGKDTIPDLFVRVYKNGERRTLNKSVFNYWCK 243

Query: 249 QLRRYL----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              + L    G       H  RHS   +L   G  L  ++S+  H  +STT+ Y
Sbjct: 244 IFAKMLYEKEGKEFKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTESY 297


>gi|149012614|ref|ZP_01833611.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP19-BS75]
 gi|168490598|ref|ZP_02714741.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC0288-04]
 gi|168492610|ref|ZP_02716753.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC0288-04]
 gi|237650525|ref|ZP_04524777.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae CCRI 1974]
 gi|237822121|ref|ZP_04597966.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae CCRI 1974M2]
 gi|147763419|gb|EDK70356.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP19-BS75]
 gi|183573243|gb|EDT93771.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC0288-04]
 gi|183574901|gb|EDT95429.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC0288-04]
 gi|332076344|gb|EGI86807.1| phage integrase family protein [Streptococcus pneumoniae GA41301]
 gi|332202399|gb|EGJ16468.1| phage integrase family protein [Streptococcus pneumoniae GA41317]
          Length = 265

 Score = 42.7 bits (99), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 8/141 (5%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +++ L   G R+SE + L  +++  +     I  KG KIR + +   +R + L +     
Sbjct: 114 VVWFLGATGARVSELIKLKVEHV--EIGYFDIYSKGGKIRRLYIPKKLRNSCLSW----- 166

Query: 219 FDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            +        LF     +P+   GV Q+      +Y   P     H+ RH FA + L+  
Sbjct: 167 LESENRRSGYLFLNKFNEPITARGVAQQLKNYADKYKMNPKVIYPHSFRHLFAKNFLAKY 226

Query: 278 GDLRSIQSILGHFRLSTTQIY 298
            D+  +  ++GH  + TT+IY
Sbjct: 227 NDIALLADLMGHESIETTRIY 247


>gi|146340556|ref|YP_001205604.1| putative phage integrase [Bradyrhizobium sp. ORS278]
 gi|146193362|emb|CAL77378.1| putative phage integrase [Bradyrhizobium sp. ORS278]
          Length = 358

 Score = 42.7 bits (99), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           GKP +   F  ++R      GLPL    H LR +    L   G     I + LGH  L+ 
Sbjct: 256 GKPFSVDGFSGWMRDAMTAAGLPLDCKPHGLRKTLGRMLADAGATAHEIMAALGHMTLAE 315

Query: 295 TQIYT-NVNSKNGG 307
            + YT   + + GG
Sbjct: 316 AERYTREADRRRGG 329


>gi|148243782|ref|YP_001220022.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|325113223|ref|YP_004277169.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|325113259|ref|YP_004277205.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|326402546|ref|YP_004282627.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|146400345|gb|ABQ28880.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|325049407|dbj|BAJ79745.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|325052690|dbj|BAJ83027.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|325052726|dbj|BAJ83063.1| phage integrase family protein [Acidiphilium multivorum AIU301]
          Length = 313

 Score = 42.7 bits (99), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213
           S +  L+   GLRISEAL+L   ++  D   LR+ QGK  K R++PL PS  + +L Y
Sbjct: 131 STLFALIAVTGLRISEALALDGNDLDADNGVLRVRQGKNGKERLLPLDPSTVERLLNY 188


>gi|313631675|gb|EFR98906.1| transposase A from transposon [Listeria seeligeri FSL N1-067]
          Length = 354

 Score = 42.7 bits (99), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 93/228 (40%), Gaps = 47/228 (20%)

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           + +   K FL ++   K  +ES IL ++  K           + AL    NV        
Sbjct: 125 KGIKQYKGFLHHIXXXKRVSES-ILKLKEPKSRVETIPDFTLQAALGATTNV-------- 175

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-----PLLP 204
                R+  +L LLY  GLRI E LSL  ++I+ D        +G ++R+V     P   
Sbjct: 176 -----RDFFLLRLLYETGLRIGEILSLHKEDILFDLH------QGHRVRLVYRKEQPNDS 224

Query: 205 SVRKAILEYY------DLCPFD------LNLNIQLPLFRGIRGK----PLNPGVFQRYIR 248
             +  + E +      DL  FD      L+ +    LF  ++GK    PLN   +Q  + 
Sbjct: 225 RQKTGLREVHISANLIDL--FDDYMYSILDFDRSDSLFVKVKGKSQGLPLN---YQDVMA 279

Query: 249 QLRRYLG-LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             +R  G +      H  RH+ AT       D++ +Q  LGH  + TT
Sbjct: 280 TFKRIEGKIEYHLHPHLYRHTHATKYYEQTKDIKIVQERLGHKHIQTT 327


>gi|303241363|ref|ZP_07327867.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302591096|gb|EFL60840.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 377

 Score = 42.7 bits (99), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 78/177 (44%), Gaps = 41/177 (23%)

Query: 167 GLRISEALSLTPQNIMDDQSTL---------RIQGKGD---------------KIRIVPL 202
           GLR+SE L+LT  NI  D++ L         R + K D                IR +PL
Sbjct: 205 GLRMSELLALTWDNIDFDKAELTVNKNLVSVRDREKEDGFKLIVQENTSKTKYSIRTIPL 264

Query: 203 ----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
               +  +RK  ++         N NI   +F    G  L P  + R  +++ +   + +
Sbjct: 265 TKRCISLLRKLKIKQ------QANSNI---VFCSKLGTHLTPRNYSRTFQRIVKKAKVEM 315

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNV--NSKNGGDWMME 312
               HT+RH+FAT L   G   ++I  +LGH  +S T   YT+V  N+K     M+E
Sbjct: 316 CN-VHTMRHTFATRLFEAGVPPKTISELLGHASVSFTLDTYTHVMPNTKKQAIDMLE 371


>gi|325678186|ref|ZP_08157815.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324110078|gb|EGC04265.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 324

 Score = 42.7 bits (99), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 27/164 (16%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI-------------------MDDQSTLRI--QGK 193
           R   ++ LL   G+R+ EAL+L  +++                     D+S  +I    K
Sbjct: 142 RYGYLIVLLLNTGMRLGEALALQWEDVDWPKRSIHICKNVENVKSRNGDKSYTKIIQMPK 201

Query: 194 GDK-IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
            DK +R +PL  +   A+++   L      +N +L +     G  ++ G  +R ++ +  
Sbjct: 202 SDKSVRRIPLNDNAMDALVK---LNSMQAEMNCKL-VVATENGNYVDGGNVRRTMQSILN 257

Query: 253 YLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             G+   T   H LRH+FAT L+  G D++ +  +LGH  ++ T
Sbjct: 258 NCGIHGKTDIVHALRHTFATLLIRRGVDIKMVSELLGHSDVTIT 301


>gi|265763441|ref|ZP_06092009.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
 gi|263256049|gb|EEZ27395.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
          Length = 379

 Score = 42.7 bits (99), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  Y++ L  +  +    T+H  RH+FAT + L+NG  +  I  +LGH  + TTQ+Y ++
Sbjct: 304 YNSYLKILGAFCEIKKKLTSHVARHTFATTVALANGVRIEVISKMLGHTNIQTTQLYAHI 363


>gi|188993958|ref|YP_001928210.1| putative bacteriophage integrase [Porphyromonas gingivalis ATCC
           33277]
 gi|188593638|dbj|BAG32613.1| putative bacteriophage integrase [Porphyromonas gingivalis ATCC
           33277]
          Length = 411

 Score = 42.7 bits (99), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 17/160 (10%)

Query: 163 LYGC--GLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRIVP--LLPSVRKAILEYYDLC 217
           ++ C  GL  ++  +LT  N+       L I  K  K  +    +L  + K I+E YD  
Sbjct: 251 VFCCFTGLSFTDMKNLTKDNLQTSFDGKLWIMTKRQKTGVESNIMLLDIPKQIIEKYDGM 310

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSN 276
             +   N  LP+ + I           + I+++    G+    T HT RH+ AT + L+N
Sbjct: 311 AKE---NFLLPVPQYITA--------CKNIKKIIGLCGIEKEITWHTSRHTMATEICLTN 359

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           G  + ++  +LGH  + TTQIY  +  +     M  + D+
Sbjct: 360 GVPIETLSKMLGHTNIRTTQIYAKITHEKESRDMAALSDK 399


>gi|153852811|ref|ZP_01994248.1| hypothetical protein DORLON_00230 [Dorea longicatena DSM 13814]
 gi|149754453|gb|EDM64384.1| hypothetical protein DORLON_00230 [Dorea longicatena DSM 13814]
          Length = 226

 Score = 42.7 bits (99), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 93/198 (46%), Gaps = 30/198 (15%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK------------------GDKI-RI 199
           ++Y+L+  G+RISE   LT ++I  +  T+ I  +                  G ++  I
Sbjct: 20  VVYILFHTGMRISEFCGLTLKDIDLENRTVNIDHQLQRTSDMRYIIETTKTDAGTRVLTI 79

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQ-RYIRQLRRY---- 253
              +  + +AI+E  +    +  ++     LF    G PL    +Q R+   + RY    
Sbjct: 80  TEDVAQMFQAIIEDRNAPKVEKTIDGYSGFLFYDDNGMPLVAMHWQHRFNHMVGRYNDIY 139

Query: 254 -LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM- 310
            + LP + T H  RH++ +++  +G + +++Q ++GH  +S T  +YT++   +  + + 
Sbjct: 140 RVQLP-NITPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNVYTHIGFDDAEEELK 198

Query: 311 -MEIYDQTHPSITQKDKK 327
            ME + +    + QK +K
Sbjct: 199 RMEEFRKAQAEVEQKKEK 216


>gi|288926555|ref|ZP_06420473.1| integrase [Prevotella buccae D17]
 gi|288336697|gb|EFC75065.1| integrase [Prevotella buccae D17]
          Length = 409

 Score = 42.7 bits (99), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +Q  ++ LR    +P   T HT RH+FAT + L  G  + ++  +LGH  +S T+ Y  V
Sbjct: 327 YQTCLKALRLRASIPFPFTTHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKV 386

Query: 302 N 302
            
Sbjct: 387 T 387


>gi|262384781|ref|ZP_06077913.1| integrase/site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|262293497|gb|EEY81433.1| integrase/site-specific recombinase [Bacteroides sp. 2_1_33B]
          Length = 113

 Score = 42.7 bits (99), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           F R ++ L+   G+    T++T+RHSFA  L      +  I  +LGH  + TTQIY
Sbjct: 30  FNRNLKTLKEVAGIVSDVTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIY 85


>gi|253568529|ref|ZP_04845940.1| transposase [Bacteroides sp. 1_1_6]
 gi|251842602|gb|EES70682.1| transposase [Bacteroides sp. 1_1_6]
          Length = 410

 Score = 42.7 bits (99), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYT 299
           G   + ++++ R  G  +  T H  RH+ AT  LLS+G  + ++  +LGH  + TTQIY 
Sbjct: 322 GSCNKILKEIGRQCGFKVRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYA 381

Query: 300 NVNSK 304
            + ++
Sbjct: 382 KITAQ 386


>gi|189467428|ref|ZP_03016213.1| hypothetical protein BACINT_03816 [Bacteroides intestinalis DSM
           17393]
 gi|189435692|gb|EDV04677.1| hypothetical protein BACINT_03816 [Bacteroides intestinalis DSM
           17393]
          Length = 412

 Score = 42.7 bits (99), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 70/155 (45%), Gaps = 20/155 (12%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD 215
            ++ C  GL   +  +L   NI       L I  K  K  I   VPLL  + K ILE Y 
Sbjct: 249 FIFSCFSGLAYVDVANLREDNIRKSFDGNLWIITKRQKTNIDVNVPLL-DIPKMILEKY- 306

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
                L     LP+   I  + LN      Y++++    G+  + T H  RH+FAT   L
Sbjct: 307 --KGKLPNGKVLPI---ISNQKLNA-----YLKEIADVCGIKKNLTFHLARHTFATTTTL 356

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGD 308
           + G  + ++  +LGH  + TTQIY  + N+K   D
Sbjct: 357 AKGVPIETVSKMLGHTNIETTQIYARITNNKISND 391


>gi|256840951|ref|ZP_05546459.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
 gi|256738223|gb|EEU51549.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
          Length = 419

 Score = 42.7 bits (99), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 20/152 (13%)

Query: 160 LYLLYG-CGLRISEALSLTPQNI---MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYY 214
           LYL     GL  S+  +LT +NI    D+   + I + K   +  + LL    + I +Y 
Sbjct: 257 LYLFCAFTGLSFSDMRNLTEENIRTYFDEHEWININRQKTGVVSNIRLLDIANRIIGKYR 316

Query: 215 DLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            LC    N  I  +P +                IR + +  G+    T H  RH+ AT +
Sbjct: 317 GLCE---NGRIFPVPHYNTCLAG----------IRAVAKRCGITKHITWHQSRHTAATTV 363

Query: 274 -LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            LSNG  + ++ S+LGH  + TTQIY  +  +
Sbjct: 364 FLSNGVPIETVSSMLGHKSIKTTQIYAKITKE 395


>gi|172034883|ref|YP_001798679.1| integrase/recombinase [Cyanothece sp. ATCC 51142]
 gi|171701647|gb|ACB54625.1| integrase/recombinase [Cyanothece sp. ATCC 51142]
          Length = 362

 Score = 42.7 bits (99), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 10/62 (16%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           FQ+  RQL          +AH+LRH+  T  +  G DLR +Q +LGH    TT +Y +V 
Sbjct: 296 FQQPQRQL----------SAHSLRHTAGTLAIRAGSDLRQVQDLLGHADPRTTALYAHVA 345

Query: 303 SK 304
            +
Sbjct: 346 DR 347


>gi|227878623|ref|ZP_03996544.1| tyrosine recombinase [Lactobacillus crispatus JV-V01]
 gi|293381039|ref|ZP_06627062.1| site-specific tyrosine recombinase XerS [Lactobacillus crispatus
           214-1]
 gi|227861782|gb|EEJ69380.1| tyrosine recombinase [Lactobacillus crispatus JV-V01]
 gi|290922395|gb|EFD99374.1| site-specific tyrosine recombinase XerS [Lactobacillus crispatus
           214-1]
          Length = 355

 Score = 42.7 bits (99), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 8/169 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI  L+ G G+R+SE   +   ++    + L +  KG +   VP+       I  Y 
Sbjct: 189 RDMAIAALILGTGIRVSECAGVDLSDLNLKDAVLDVTRKGGQKDSVPIAEWTLPYIKRYK 248

Query: 215 DLCPFDLNLNI-QLPLF----RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
            +     + +  Q+  F     G + + +     ++ I +     G PL  T H LRH+ 
Sbjct: 249 GIRNERYHADSKQVAFFLTQWHG-QTRRITTNAIEKMINKYSAAFGHPL--TPHKLRHTV 305

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           A+ L     D   +   LG    S T +YT+V+ K     + EI  + H
Sbjct: 306 ASELYEVTKDQVLVAQQLGQKGTSATDLYTHVDQKKQRAALNEISKKNH 354


>gi|325855399|ref|ZP_08171832.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483836|gb|EGC86790.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 344

 Score = 42.7 bits (99), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 5/73 (6%)

Query: 232 GIRGKPLNPGVFQRYIRQ--LRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           G RG+ L    F+  + Q  L+R+L   G+    T H  RHSF +  +  G D+  IQ+ 
Sbjct: 271 GERGEGLIFEDFKDKMLQGPLQRWLTAAGITKKITFHCTRHSFGSLHVEMGTDMAVIQAY 330

Query: 287 LGHFRLSTTQIYT 299
           LGH  ++TTQIY+
Sbjct: 331 LGHKNITTTQIYS 343


>gi|325663344|ref|ZP_08151794.1| hypothetical protein HMPREF0490_02535 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470798|gb|EGC74028.1| hypothetical protein HMPREF0490_02535 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 463

 Score = 42.7 bits (99), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS-NGGDLRSIQSILGHFRLS 293
           G P+  G  +  +++L     LP     H+LRHS  T+ L  NGGD++++Q   GH ++ 
Sbjct: 329 GNPIGTGAIRGQLKKLIEEHNLP-PVVFHSLRHSSVTYKLKLNGGDIKAVQGDSGHSQVD 387

Query: 294 -TTQIYTNV 301
             T IY+++
Sbjct: 388 MVTDIYSHI 396


>gi|315029442|gb|EFT41374.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4000]
          Length = 392

 Score = 42.7 bits (99), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 110/252 (43%), Gaps = 42/252 (16%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNI---------LNMRNLKKS-NSLPRALNEKQALT 136
           SL+  +  +     Y KK+ +  E+ +         L++++LK+S NSL     E + LT
Sbjct: 133 SLQSLVQVLNMVFNYCKKKNLINENPMKFVKMPKYQLSLKDLKESVNSL-----EDKFLT 187

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL------RI 190
            VD +    ++   + +     + ++L+  G  +SEAL+L PQ+I  +++ +       +
Sbjct: 188 -VDELRAFLNYGIVYEELPMCVLFHVLFYTGCCVSEALALQPQDIDFERNEILFYKQTAV 246

Query: 191 QGKGDKIRI-----------VPLLPSVRKAILEYYD-LCPFDLNLNIQLP-------LFR 231
           +GK    RI           VP+ P V + + E  D L     N N  +        L  
Sbjct: 247 KGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRNSNFVVDETYLFVYLDP 306

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           G RG P        ++++     G+      H  RH+ A+ L++       ++  LGH  
Sbjct: 307 GKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMAS-LVAEYCSWDVLKDRLGHTD 365

Query: 292 LSTTQIYTNVNS 303
            +T++IY ++ S
Sbjct: 366 STTSKIYRHLTS 377


>gi|295084283|emb|CBK65806.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 423

 Score = 42.7 bits (99), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 34/58 (58%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           ++++ +  G+    + H+ RH FAT  LS G  + S+  +LGH  ++TTQ Y  + ++
Sbjct: 342 LKKMIKECGITKDISFHSSRHGFATLALSKGVPIESVSRVLGHTNITTTQKYAKITTE 399


>gi|160915258|ref|ZP_02077471.1| hypothetical protein EUBDOL_01266 [Eubacterium dolichum DSM 3991]
 gi|158433057|gb|EDP11346.1| hypothetical protein EUBDOL_01266 [Eubacterium dolichum DSM 3991]
          Length = 357

 Score = 42.7 bits (99), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 82/190 (43%), Gaps = 33/190 (17%)

Query: 125 LPRALNEKQA-----LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL-TP 178
           LP A+NEKQ+      T  +  +L    +  ++D     IL ++Y  G RI+E L +   
Sbjct: 174 LP-AINEKQSDLHQPFTKEELRILWEHKDMPYVDT----ILIMIY-TGFRINELLEMENC 227

Query: 179 QNIMDDQSTLRIQGKGD--KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
           +NI  +  T++   K D  K RIVP+  S+   ++ +YD          Q    R  R  
Sbjct: 228 KNIDIENKTMKGGFKTDAGKDRIVPIHSSIMPLVMNHYDPA--------QKYFIRNKRN- 278

Query: 237 PLNPGVFQRYIRQLRRY-----LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
               G   +Y      Y     + L +    H  RH+FAT L     +  SI  ++GH  
Sbjct: 279 ----GSRMKYQNYRNNYFDKIMIKLKMEHLPHDCRHTFATLLNDAEANSTSIMKLIGHSS 334

Query: 292 LSTTQ-IYTN 300
              T+ IYT+
Sbjct: 335 FDITEKIYTH 344


>gi|15900420|ref|NP_345024.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae TIGR4]
 gi|111656906|ref|ZP_01407732.1| hypothetical protein SpneT_02001846 [Streptococcus pneumoniae
           TIGR4]
 gi|148988249|ref|ZP_01819712.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP6-BS73]
 gi|148993501|ref|ZP_01822992.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP9-BS68]
 gi|148996902|ref|ZP_01824620.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|149005620|ref|ZP_01829359.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP18-BS74]
 gi|149026392|ref|ZP_01836530.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP23-BS72]
 gi|168482749|ref|ZP_02707701.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC1873-00]
 gi|168485036|ref|ZP_02709974.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC1873-00]
 gi|168488195|ref|ZP_02712394.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae SP195]
 gi|169834025|ref|YP_001694006.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae Hungary19A-6]
 gi|221231343|ref|YP_002510495.1| phage integrase/recombinase [Streptococcus pneumoniae ATCC 700669]
 gi|225854059|ref|YP_002735571.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae JJA]
 gi|225856225|ref|YP_002737736.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae P1031]
 gi|298229903|ref|ZP_06963584.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298256069|ref|ZP_06979655.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298502303|ref|YP_003724243.1| integrase/recombinase [Streptococcus pneumoniae TCH8431/19A]
 gi|303260805|ref|ZP_07346758.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP-BS293]
 gi|303263137|ref|ZP_07349063.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP14-BS292]
 gi|303265412|ref|ZP_07351316.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS397]
 gi|303267711|ref|ZP_07353531.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS457]
 gi|303270083|ref|ZP_07355795.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS458]
 gi|307067137|ref|YP_003876103.1| integrase [Streptococcus pneumoniae AP200]
 gi|307126721|ref|YP_003878752.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae 670-6B]
 gi|14971979|gb|AAK74664.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae TIGR4]
 gi|147757477|gb|EDK64516.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|147762560|gb|EDK69520.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP18-BS74]
 gi|147926713|gb|EDK77786.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP6-BS73]
 gi|147927870|gb|EDK78891.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP9-BS68]
 gi|147929275|gb|EDK80275.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP23-BS72]
 gi|168996527|gb|ACA37139.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae Hungary19A-6]
 gi|172041857|gb|EDT49903.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC1873-00]
 gi|172043607|gb|EDT51653.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC1873-00]
 gi|183573161|gb|EDT93689.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae SP195]
 gi|220673803|emb|CAR68305.1| putative phage integrase/recombinase [Streptococcus pneumoniae ATCC
           700669]
 gi|225723018|gb|ACO18871.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae JJA]
 gi|225725635|gb|ACO21487.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae P1031]
 gi|298237898|gb|ADI69029.1| integrase/recombinase [Streptococcus pneumoniae TCH8431/19A]
 gi|301801395|emb|CBW34081.1| putative phage integrase/recombinase [Streptococcus pneumoniae
           INV200]
 gi|302635724|gb|EFL66233.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP14-BS292]
 gi|302638054|gb|EFL68536.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP-BS293]
 gi|302640385|gb|EFL70820.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS458]
 gi|302642755|gb|EFL73082.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS457]
 gi|302645053|gb|EFL75296.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS397]
 gi|306408674|gb|ADM84101.1| Integrase [Streptococcus pneumoniae AP200]
 gi|306483783|gb|ADM90652.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae 670-6B]
 gi|327390253|gb|EGE88594.1| phage integrase family protein [Streptococcus pneumoniae GA04375]
 gi|332074783|gb|EGI85256.1| phage integrase family protein [Streptococcus pneumoniae GA17570]
 gi|332204531|gb|EGJ18596.1| phage integrase family protein [Streptococcus pneumoniae GA47901]
          Length = 265

 Score = 42.7 bits (99), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 8/141 (5%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +++ L   G R+SE + L  +++  +     I  KG KIR + +   +R + L +     
Sbjct: 114 VVWFLGATGARVSELIKLKVEHV--EIGYFDIYSKGGKIRRLYIPKKLRNSCLSW----- 166

Query: 219 FDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            +        LF     +P+   GV Q+      +Y   P     H+ RH FA + L+  
Sbjct: 167 LESENRRSGYLFLNKFNEPITARGVAQQLKNYADKYKMNPKVIYPHSFRHLFAKNFLAKY 226

Query: 278 GDLRSIQSILGHFRLSTTQIY 298
            D+  +  ++GH  + TT+IY
Sbjct: 227 NDIALLADLMGHESIETTRIY 247


>gi|325478372|gb|EGC81487.1| site-specific recombinase, phage integrase family [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 374

 Score = 42.7 bits (99), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 33/159 (20%)

Query: 162 LLYGCGLRISEALSLTPQN-------IMDDQSTLRIQGKG--------DKIR--IVP--L 202
           LLY CGLR+ E L+LT +        +  D+S  RI GK           IR  ++P  L
Sbjct: 196 LLYWCGLRMGELLALTEEKFDFKRHTLKIDESLQRIDGKNVITAPKTKKSIRTIVMPEFL 255

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
              +++ I  +Y L P DL  N      +      ++ G  +  ++++R           
Sbjct: 256 NDEIKEYIESFYKLKPKDLIFNFS----KSYLHHEMDRGSKKSQVKRIR----------I 301

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H LRHS  + L+  G    +I   +GH  +  T  Y ++
Sbjct: 302 HDLRHSHVSLLIELGFSATAIADRVGHESIDITYRYAHL 340


>gi|238809493|dbj|BAH69283.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 375

 Score = 42.7 bits (99), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 91/208 (43%), Gaps = 28/208 (13%)

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
           +F+K+L +      +  L++ + KK     +A + ++ L + + V L       W D + 
Sbjct: 95  TFIKWLSEYTGVYINTKLDLDSFKKVGGTRQAYSMEEYLKIFNYVEL-------WGDLKF 147

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPL--------LPSVR 207
             +  +L   G+RI E  ++    ++ +  T RI+  K +  R+  +          ++R
Sbjct: 148 KLVFQILAITGVRIGELANVNWTLLVKNNFTQRIETEKKNNTRLFTIPKPETNHYFANLR 207

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + I++  D     LN+       + I+ K     +F+ Y+ +L    G+ +S  AH LRH
Sbjct: 208 QDIIDNIDFFKKGLNI-------KTIQNKF---NLFKHYVHELEPEWGIKIS--AHMLRH 255

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTT 295
            F  +   N G    +  ++GH    TT
Sbjct: 256 FFIVNAHLNIGRTEEVAKLVGHVNSQTT 283


>gi|222080265|ref|YP_002540129.1| integrase/recombinase [Agrobacterium vitis S4]
 gi|221738910|gb|ACM39689.1| integrase/recombinase [Agrobacterium vitis S4]
          Length = 109

 Score = 42.7 bits (99), Expect = 0.070,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 27/44 (61%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + H LRHS A HL   G  L  I+ ILGH  LSTT+IY   +++
Sbjct: 32  SPHILRHSKAMHLYEAGIPLPYIRDILGHVDLSTTEIYARASTE 75


>gi|124265741|ref|YP_001019745.1| hypothetical protein Mpe_A0548 [Methylibium petroleiphilum PM1]
 gi|124258516|gb|ABM93510.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
          Length = 334

 Score = 42.7 bits (99), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 51/249 (20%), Positives = 101/249 (40%), Gaps = 49/249 (19%)

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK---KSNSLPRALNE 131
           + K + + +   +L R  + + + L + ++R+I  ++     R+++   + N + R L++
Sbjct: 104 VMKAKRRPLAPATLNRYQAALSAVLTWAQRRRIAPKNWQNPCRHVELKAEKNEIVRFLSD 163

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS------EALSLTPQNIMDDQ 185
            +        LL    ++ W        LYLL   GL         EAL     ++   +
Sbjct: 164 AE-----RTALLAACRKSSWPR------LYLLVMMGLTTGARRGELEALRWADVDLERAE 212

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF---------DLNLNIQLPLFRGIRGK 236
           + +     GDK +++PL+P+V   + ++               D+  N      R ++  
Sbjct: 213 AAVHRSKNGDK-KVLPLVPAVVDELAKHAGAANALVFPSTRRPDIAYNFDPAWDRALKAA 271

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            +    F                   H LRHS A+ L  NG  L  I  +LGH +LS T+
Sbjct: 272 GVKSFRF-------------------HDLRHSCASALAQNGATLLEIAEVLGHRQLSVTK 312

Query: 297 IYTNVNSKN 305
            Y+++ + +
Sbjct: 313 RYSHLATDH 321


>gi|293567280|ref|ZP_06678634.1| phage integrase family protein [Enterococcus faecium E1071]
 gi|291590029|gb|EFF21823.1| phage integrase family protein [Enterococcus faecium E1071]
          Length = 268

 Score = 42.7 bits (99), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 27/176 (15%)

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQG---------- 192
           TSH  ++     S +   LY  G+R  EA++L+  +  I ++ +++ I G          
Sbjct: 86  TSHNKRY-----SLLFQWLYLTGMRPGEAIALSKDDVHITNNNASVVINGTMMYRERSIA 140

Query: 193 ---KGDKIRIVPLLPSV---RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
              K D  +    +  +   +KAI  Y +L   +LN N Q  LF+  +G P        Y
Sbjct: 141 DMKKSDSTKTAAGMREIDLPKKAIAIYNEL--LELNPNGQF-LFQTTKGTPFQLTAINTY 197

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNV 301
           +R  +  + +    ++H  RH+  + L      L +IQ  +GH     T+ IY +V
Sbjct: 198 LRNHKADMKIDKKLSSHIFRHTHISKLAELETPLYAIQDRVGHENSDITEKIYLHV 253


>gi|229142694|ref|ZP_04271168.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST26]
 gi|228640757|gb|EEK97114.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST26]
          Length = 322

 Score = 42.7 bits (99), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 128/294 (43%), Gaps = 23/294 (7%)

Query: 16  KERQNWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +E +N +++  IE+   G +  TLQ Y  D R  L  +  + E K  I   R+    +IR
Sbjct: 19  QENKNLVKDFLIEKKAQGKAASTLQQYHWDLRIILFLIHQHFENKKLIDLTRK----DIR 74

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILN-MRNLKKSNSLP-RAL 129
                 +  ++ +  +   +S ++S L++         E N+ + +R L K+       +
Sbjct: 75  NLSIIFQEMEMSNARVNGLMSALRSTLEFCADDDDYDYEFNVGSRVRGLPKNPVREITFI 134

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +E+Q   L+D +L     + K+I A     L L Y    R +E   +  + + +   T  
Sbjct: 135 SEEQIEWLIDELL----KQEKYILA---TYLALSYYSAARKNEVYQVQKEELTERYFTNV 187

Query: 190 IQGK-GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           ++GK G K R+    P V+K I  Y +    D   ++ + +++    + LN  VF  + +
Sbjct: 188 VRGKRGKKFRLY-YNPRVQKCIRLYINQRGKDTIPDLFVRVYKNGERRTLNKSVFNYWCK 246

Query: 249 QLRRYL----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              + L    G       H  RHS   +L   G  L  ++S+  H  +STT+ Y
Sbjct: 247 IFAKMLYEKEGKEFKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTESY 300


>gi|241895011|ref|ZP_04782307.1| integrase [Weissella paramesenteroides ATCC 33313]
 gi|241871729|gb|EER75480.1| integrase [Weissella paramesenteroides ATCC 33313]
          Length = 309

 Score = 42.7 bits (99), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 19/148 (12%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-KIRIVPLLPSVRKAILEYYDLCPFD 220
           L+   GLR SEAL +TP +    + TL +    D K       P+   A +      P D
Sbjct: 142 LVAKTGLRFSEALGITPDDFDLSRLTLSVNKTWDYKSNEGSFSPTKNTASMRK---VPID 198

Query: 221 LNLNIQLPLFRGIRGKPLNPGVF----QRYIRQ-----LRRYL---GLPLSTTAHTLRHS 268
             + +Q      ++  P N  +F    +++  +     L RY    G+P   + H LRH+
Sbjct: 199 WQIAMQFAQL--VKDLPKNQPIFITNGKKFYNETANDKLARYCQKAGIP-EISVHGLRHT 255

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 256 HASLLLYAGVSIASVAQRLGHSNMNTTQ 283


>gi|237727472|ref|ZP_04557953.1| integrase [Bacteroides sp. D4]
 gi|229434328|gb|EEO44405.1| integrase [Bacteroides dorei 5_1_36/D4]
          Length = 371

 Score = 42.7 bits (99), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 33/58 (56%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           G   + ++ L   LG+  + T +  RHSFA+ L  +G ++  I   LGH  L+TTQIY
Sbjct: 297 GKVNKNLKLLAADLGVEANITTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIY 354


>gi|188591566|ref|YP_001796165.1| Phage integrase [Cupriavidus taiwanensis]
 gi|170938961|emb|CAP63968.1| Phage integrase [Cupriavidus taiwanensis LMG 19424]
          Length = 616

 Score = 42.7 bits (99), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 24/47 (51%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
              H LRH+FATH ++N      +Q +LGH  L TT +Y       G
Sbjct: 560 AAPHALRHTFATHAVANEMPADVLQRLLGHASLQTTSLYVRAERARG 606


>gi|170765536|ref|ZP_02900347.1| site-specific recombinase [Escherichia albertii TW07627]
 gi|170124682|gb|EDS93613.1| site-specific recombinase [Escherichia albertii TW07627]
          Length = 213

 Score = 42.7 bits (99), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 40/173 (23%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRI----------QGKGDKIRIV 200
           D R+  +   L+  G+RI EA  LTP++   D  +  +RI          +   D++R+V
Sbjct: 26  DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLV 85

Query: 201 PL--LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL---NPGVFQRYIRQLRR--- 252
           PL  +  VR+  +E + +              R  R +PL        + +++Q  R   
Sbjct: 86  PLTDISYVRQ--MESWMIT------------TRPRRREPLWAVTDETMRNWLKQAARRAE 131

Query: 253 ----YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               +  +P+  T HT RHS+  H+L +    + IQ++ GH    + +IYT V
Sbjct: 132 ADGVHFSIPV--TPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEIYTRV 182


>gi|295104559|emb|CBL02103.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 391

 Score = 42.7 bits (99), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 68/165 (41%), Gaps = 31/165 (18%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQG-------KGDKI-------------RIVPLLPSV 206
           GLR SE L L    I  + +TL I+         G K+             R +PL+P +
Sbjct: 207 GLRRSEVLGLKWDAIDFEANTLEIKHIVTQASIDGKKVLVQADRAKTKSSLRTLPLVPPI 266

Query: 207 RKAIL-------EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PL 258
           R  +L        Y  LC    N      L     G  + P        +L    GL P+
Sbjct: 267 RDRLLMLKGQQDTYRRLCGKSYNREYLGYLCVDEIGNIIRPNYVSEQFPKLLEKNGLRPI 326

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN 302
               H LRHS A+ LL+NG  ++ IQ  LGH   STT  IY +++
Sbjct: 327 RF--HDLRHSCASLLLANGVPMKQIQEWLGHSDFSTTANIYAHLD 369


>gi|254480874|ref|ZP_05094120.1| site-specific recombinase, phage integrase family [marine gamma
           proteobacterium HTCC2148]
 gi|214038669|gb|EEB79330.1| site-specific recombinase, phage integrase family [marine gamma
           proteobacterium HTCC2148]
          Length = 392

 Score = 42.7 bits (99), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 66/150 (44%), Gaps = 15/150 (10%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYD 215
           IL+LL   G R+SEALS    +I        IQ    K  K R VPL   V   +L+  D
Sbjct: 233 ILFLL-STGARVSEALSAEWSDIDRKNRVWVIQATNSKSKKKRSVPL-NDVAIGVLDALD 290

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
                        LF G RG PL      +   ++R   GL      H LRHS+A+ L++
Sbjct: 291 ------TEGKHDRLFVGKRG-PLT--TINKVWFRIRSEAGLE-DYRIHDLRHSYASLLVN 340

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            G  L  +Q  LGH     T  Y +++ ++
Sbjct: 341 AGHSLFEVQQALGHSDPKVTMRYAHLSKES 370


>gi|193064762|ref|ZP_03045840.1| putative integrase [Escherichia coli E22]
 gi|192927645|gb|EDV82261.1| putative integrase [Escherichia coli E22]
          Length = 531

 Score = 42.7 bits (99), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 68/168 (40%), Gaps = 31/168 (18%)

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGD------ 195
           HT+H T   +AR  A L  +   G R +E   LT ++I  +D    + I   GD      
Sbjct: 355 HTAHTTS--EARRWATLVSVV-TGARSAEVCHLTKRDIVTIDTMVCIDINEDGDGKSVKN 411

Query: 196 --KIRIVPLLPSVR----KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-- 247
              +R+VPL          + L + D  P D       PLF       + P  +  +   
Sbjct: 412 KHSVRLVPLTDGAYGFDLTSFLSWVDAQPDDG------PLF------GMTPSAYSSWFNS 459

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           R L   L    + + H+LRH  AT +   G +L   Q ILGH   S T
Sbjct: 460 RVLTEALPDADNVSLHSLRHWLATRMKERGVNLVDAQGILGHSSQSIT 507


>gi|168213070|ref|ZP_02638695.1| putative phage integrase family protein [Clostridium perfringens
           CPE str. F4969]
 gi|170715383|gb|EDT27565.1| putative phage integrase family protein [Clostridium perfringens
           CPE str. F4969]
          Length = 312

 Score = 42.7 bits (99), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 17/156 (10%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           + RN  ++  +   GLR++  +++  ++I  D++       K  K  I+PL   + K + 
Sbjct: 141 EYRNWVLVNFILSTGLRLNSFVNIKVKDIDFDNEVVFVNMTKNRKPLIIPLNNIIIKILR 200

Query: 212 EYYDLCPFDLNLNIQLP------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           EY         L I+ P      LF    G  L+       +    +  G+   T  H  
Sbjct: 201 EY---------LRIRKPDKEDDYLFCNDYGIQLSKCTINASLSSYNKKRGIN-KTGIHRY 250

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           RH+FA   + NGG++ ++Q ILGH  L  T+ Y N+
Sbjct: 251 RHTFAKKWIMNGGNVVTLQKILGHSNLQITENYINL 286


>gi|111221184|ref|YP_711978.1| putative integrase [Frankia alni ACN14a]
 gi|111148716|emb|CAJ60391.1| Putative integrase (partial) [Frankia alni ACN14a]
          Length = 137

 Score = 42.7 bits (99), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 6/105 (5%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +F    G PL P    R    LRR   LP     H LRH+FA+ L + G   R++  +LG
Sbjct: 28  VFTSSVGTPLEPRNVNRRFEVLRRQADLPW-LRLHDLRHAFASMLFAEGVPARTVMELLG 86

Query: 289 HFRLS-TTQIYTNV---NSKNGGDWMMEIYDQ-THPSITQKDKKN 328
           H  +  T   YT+V     ++  D +  I+ + TH    + D+ +
Sbjct: 87  HSTIQLTMNTYTHVMPETQRDAVDRLDRIFGEPTHSDDNEPDEND 131


>gi|329963190|ref|ZP_08300927.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328528886|gb|EGF55826.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 412

 Score = 42.7 bits (99), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 14/140 (10%)

Query: 167 GLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPFDLN 222
           GL   +   L+P++I+ D+   L I+    K +    +PLL    + + +Y D  P    
Sbjct: 260 GLAFIDVQQLSPEHIVKDNNGNLWIRKPRQKTKNMCNIPLLDIPLEILRKYADY-PASKK 318

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLR 281
             + LP+       P N  +   Y++++     +  + T H  RHS+AT + L+NG  + 
Sbjct: 319 KGVLLPV-------PCNQKM-NSYLKEIANLCQIKKNLTTHRARHSYATSVCLANGVSIE 370

Query: 282 SIQSILGHFRLSTTQIYTNV 301
           ++  +LGH  +  TQ Y  V
Sbjct: 371 NVTKMLGHSNIKMTQHYARV 390


>gi|325269967|ref|ZP_08136576.1| integrase [Prevotella multiformis DSM 16608]
 gi|324987690|gb|EGC19664.1| integrase [Prevotella multiformis DSM 16608]
          Length = 411

 Score = 42.7 bits (99), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 20/152 (13%)

Query: 160 LYLLYG-CGLRISEALSLTPQNI---MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYY 214
           LYL     GL  ++  +LT +NI    D+   + I + K   +  + LL   ++ I +Y 
Sbjct: 249 LYLFCAFTGLSFADMRNLTEENIHTYFDEHEWININRQKTGVVSNIRLLDIAKRIIDKYR 308

Query: 215 DLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            LC    N  I  +P +                IR + +  G+    T H  RH+ AT +
Sbjct: 309 GLCG---NGRIFPVPHYNTCLAG----------IRSVAKRCGITKHITWHQSRHTAATTV 355

Query: 274 -LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            LSNG  + ++ S+LGH  + TTQIY  +  +
Sbjct: 356 FLSNGVPIETVSSMLGHKSIKTTQIYAKITKE 387


>gi|299536245|ref|ZP_07049558.1| prophage Lp3 protein 1, integrase [Lysinibacillus fusiformis ZC1]
 gi|298728231|gb|EFI68793.1| prophage Lp3 protein 1, integrase [Lysinibacillus fusiformis ZC1]
          Length = 388

 Score = 42.7 bits (99), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 25/166 (15%)

Query: 162 LLYGCGLRISEALSLTPQ--NIMDDQSTL-RIQGKGD------------KIRIVPLLPSV 206
           L+   G+R SEAL+LT    N ++++ T+ +  G+G             K R + L  + 
Sbjct: 210 LIAYTGMRKSEALALTWNDVNFVENEITINKAIGRGKQTQLYLKTTKTGKPRTIKLDETT 269

Query: 207 RKAILEYYDLCP---FDLNLNI----QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
              + E+  L       L +N     QL +F   +   + PG  Q+++  ++    L   
Sbjct: 270 LSILKEWNKLQKQQYIQLGINTLKKNQL-MFSNTKNDFIQPGQVQKWMYSVQNKYTLK-K 327

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
            + H LRH+  + L   G  ++ +Q  LGH  + TT  IYT+V  K
Sbjct: 328 VSPHGLRHTHCSLLFEAGASIKEVQDRLGHSDVKTTLDIYTHVTKK 373


>gi|15902491|ref|NP_358041.1| integrase/recombinase [Streptococcus pneumoniae R6]
 gi|116515761|ref|YP_815960.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae D39]
 gi|15458015|gb|AAK99251.1| Integrase/recombinase [Streptococcus pneumoniae R6]
 gi|116076337|gb|ABJ54057.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae D39]
          Length = 265

 Score = 42.7 bits (99), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 8/141 (5%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +++ L   G R+SE + L  +++  +     I  KG KIR + +   +R + L +     
Sbjct: 114 VVWFLGATGARVSELIKLKVEHV--EIGYFDIYSKGGKIRRLYIPKKLRNSCLSW----- 166

Query: 219 FDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            +        LF     +P+   GV Q+      +Y   P     H+ RH FA + L+  
Sbjct: 167 LESENRRSGYLFLNKFNEPITARGVAQQLKNYADKYKMNPKVIYPHSFRHLFAKNFLAKY 226

Query: 278 GDLRSIQSILGHFRLSTTQIY 298
            D+  +  ++GH  + TT+IY
Sbjct: 227 NDIALLADLMGHESIETTRIY 247


>gi|332827311|gb|EGK00076.1| hypothetical protein HMPREF9455_03600 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 391

 Score = 42.7 bits (99), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 70/154 (45%), Gaps = 32/154 (20%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-----GKG---DKIRIVPLLPSVRKA 209
           A L+ LY  GLR  + + L   N+  D S+ RI+      KG   + I I+PL  ++   
Sbjct: 238 AFLFCLYA-GLRYCDVVDLRYSNV--DYSSKRIKFEQAKTKGHSKNSIVIIPLSHTLLSL 294

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL---GLPLSTTAHTLR 266
           I E     P   +   +LP   G              ++ LR ++   G+    T H  R
Sbjct: 295 IGEK----PKKDDYIFKLPSHTGC-------------LKALRTWVARAGIDKHITWHCAR 337

Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYT 299
           HSFA +LL     D++++ S+LGH  L  T+ YT
Sbjct: 338 HSFAVNLLGECQTDIKTVASLLGHSGLKHTEKYT 371


>gi|298383495|ref|ZP_06993056.1| integrase [Bacteroides sp. 1_1_14]
 gi|298263099|gb|EFI05962.1| integrase [Bacteroides sp. 1_1_14]
          Length = 411

 Score = 42.7 bits (99), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 18/151 (11%)

Query: 160 LYLLYG-CGLRISEALSLTPQNI---MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYY 214
           LYL     GL  S+  +LT +NI    D+   + I + K   +  + LL    + I +Y 
Sbjct: 249 LYLFCAFTGLSFSDMRNLTEENIRTYFDEHEWININRQKTGVVSNIRLLDIANRIIGKYR 308

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL- 273
            LC  D  +   +P +                IR + +  G+    T H  RH+ AT + 
Sbjct: 309 GLCG-DGRI-FPVPHYNTCLAG----------IRAVAKRCGITKHITWHQSRHTAATTVF 356

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           LSNG  + ++ S+LGH  + TTQIY  +  +
Sbjct: 357 LSNGVPIETVSSMLGHKSIKTTQIYAKITKE 387


>gi|257886708|ref|ZP_05666361.1| phage integrase [Enterococcus faecium 1,141,733]
 gi|257822762|gb|EEV49694.1| phage integrase [Enterococcus faecium 1,141,733]
          Length = 326

 Score = 42.7 bits (99), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 20/164 (12%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDD----QSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           N+ +L LL+  G+RISEAL+L   +  +       TL  +  G KI       S    +L
Sbjct: 147 NATLLRLLFYSGMRISEALALKWSDFQEKTVSINKTLSQRKNGYKISSPKTKSSTNSLLL 206

Query: 212 EYYDLC----------PFDLNLNIQLP--LFRGIRGK-PLNPGVFQRYIRQLRRYLGLPL 258
           +                + L L +  P  +F GI  +  ++  ++ R I  L    G+P 
Sbjct: 207 DEETFTIMKKWLVNQRKYMLTLGVTDPTMVFCGIYKEIVIHHAIYSRLI-SLTEKAGIPF 265

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNV 301
               H  RH+ A+ LL +G  ++ +Q  L H ++S T  +Y+++
Sbjct: 266 -LGVHVTRHTHASLLLDSGATMKEVQDRLRHTKISQTMDVYSHL 308


>gi|160893592|ref|ZP_02074376.1| hypothetical protein CLOL250_01146 [Clostridium sp. L2-50]
 gi|156864577|gb|EDO58008.1| hypothetical protein CLOL250_01146 [Clostridium sp. L2-50]
          Length = 372

 Score = 42.7 bits (99), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 3/92 (3%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           GKP+        + +L++  G+ +  T H LRH FA      G  L  I   LGH  + T
Sbjct: 282 GKPMQDSGVYALMERLQKKTGIKV--TPHMLRHYFANARRKAGWKLELISQALGHRNIET 339

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
           T  Y N++ +   D   E Y + H SI + DK
Sbjct: 340 TMRYLNISDQELMDVSDEFY-RKHQSIYEIDK 370


>gi|324994455|gb|EGC26368.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK678]
          Length = 356

 Score = 42.7 bits (99), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 103/276 (37%), Gaps = 41/276 (14%)

Query: 68  YTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL- 125
           Y   R  ++   TQ  +   ++ R+LS + S  KYL +     +      RN+ K  +  
Sbjct: 85  YLRERPLLNANTTQNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATK 144

Query: 126 -------PRALNEKQALTLVDNVLLHTSHETKWIDA-------------------RNSAI 159
                   RA N KQ L L D     T    ++ID                    R+ AI
Sbjct: 145 KKKETLAARAENIKQKLFLGD----ETEEFLQYIDTEYPKKLSNRALSSFNKNKERDLAI 200

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP- 218
           + LL   G+R+SEA++L  ++I      + +  KG K   V +    +  + EY  +   
Sbjct: 201 IALLLASGVRLSEAVNLDLKDINLKMMVIEVTRKGGKRDSVNVAAFAKPYLEEYLSIRSK 260

Query: 219 -FDLNLNIQLPLFRGIRGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
            +              RG P  ++    ++ + +        +  T H LRH+ AT L  
Sbjct: 261 RYKAEKTDTAFFLTEYRGSPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYD 318

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGD 308
                  +   LGH     T +YT++     KN  D
Sbjct: 319 ATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|299145868|ref|ZP_07038936.1| integrase [Bacteroides sp. 3_1_23]
 gi|298516359|gb|EFI40240.1| integrase [Bacteroides sp. 3_1_23]
          Length = 379

 Score = 42.7 bits (99), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  Y++ L  +  +    T+H  RH+FAT + L+NG  +  I  +LGH  + TTQ+Y ++
Sbjct: 304 YNSYLKILGAFCEIKKKLTSHVARHTFATTVALANGVRIEVISKMLGHTNIQTTQLYAHI 363


>gi|265755233|ref|ZP_06090003.1| integrase [Bacteroides sp. 3_1_33FAA]
 gi|263234375|gb|EEZ19965.1| integrase [Bacteroides sp. 3_1_33FAA]
          Length = 411

 Score = 42.7 bits (99), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 20/152 (13%)

Query: 160 LYLLYG-CGLRISEALSLTPQNI---MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYY 214
           LYL     GL  ++  +LT +NI    D+   + I + K   +  + LL   ++ I +Y 
Sbjct: 249 LYLFCAFTGLSFADMRNLTEENIHTYFDEHEWININRQKTGVVSNIRLLDIAKRIIDKYR 308

Query: 215 DLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            LC    N  I  +P +                IR + +  G+    T H  RH+ AT +
Sbjct: 309 GLCG---NGRIFPVPHYNTCLAG----------IRSVAKRCGITKHITWHQSRHTAATTV 355

Query: 274 -LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            LSNG  + ++ S+LGH  + TTQIY  +  +
Sbjct: 356 FLSNGVPIETVSSMLGHKSIKTTQIYAKITKE 387


>gi|160931503|ref|ZP_02078899.1| hypothetical protein CLOLEP_00336 [Clostridium leptum DSM 753]
 gi|160934558|ref|ZP_02081944.1| hypothetical protein CLOLEP_03431 [Clostridium leptum DSM 753]
 gi|311063707|ref|YP_003970432.1| DNA integration/recombination/inversion protein [Bifidobacterium
           bifidum PRL2010]
 gi|156866011|gb|EDO59383.1| hypothetical protein CLOLEP_03431 [Clostridium leptum DSM 753]
 gi|156869568|gb|EDO62940.1| hypothetical protein CLOLEP_00336 [Clostridium leptum DSM 753]
 gi|310866026|gb|ADP35395.1| DNA integration/recombination/inversion protein [Bifidobacterium
           bifidum PRL2010]
          Length = 397

 Score = 42.7 bits (99), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 68/167 (40%), Gaps = 31/167 (18%)

Query: 160 LYLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKG---------DKIRIVPLL 203
           L +L G GLRISE   LT  +I         D   LR    G           IR +P+ 
Sbjct: 216 LIILLGTGLRISELCGLTDTDINFENRIINVDHQLLRSAETGYYIETPKTKSGIRQIPMS 275

Query: 204 PSVRKAILEY------YDLCPFDLNLNIQLPLFRGIRGKPLNP----GVFQRYIRQLRRY 253
             V +A                D   N    LF    G P       G+F+   ++  +Y
Sbjct: 276 EKVYEAFNRVLKRRRGAKAVTIDGYSNF---LFLNRDGYPKTATNYDGMFRGLAKKYNKY 332

Query: 254 L--GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
               LP   T HTLRH+F T++ + G + +++Q I+GH  ++ T  Y
Sbjct: 333 HEEALPKVMTPHTLRHTFCTNMANAGMNPKALQYIMGHSNITMTLNY 379


>gi|154491554|ref|ZP_02031180.1| hypothetical protein PARMER_01165 [Parabacteroides merdae ATCC
           43184]
 gi|154088355|gb|EDN87400.1| hypothetical protein PARMER_01165 [Parabacteroides merdae ATCC
           43184]
          Length = 411

 Score = 42.7 bits (99), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 14/140 (10%)

Query: 167 GLRISEALSLTPQNIMDDQS----TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           GL   +   L P++I++D +      + + K   +  +PLL  +   IL  Y   P    
Sbjct: 260 GLAFIDVQQLAPEHIVEDSNGNLWIRKPRQKTKNMCNIPLL-DIPLEILRKYAEHPACQK 318

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLR 281
            N  LP+       P N  +   Y++++     +  + T H  RHS+AT + L+NG  + 
Sbjct: 319 KNRLLPV-------PCNQKM-NSYLKEIADLCMINKTLTTHVARHSYATSVCLANGVSIE 370

Query: 282 SIQSILGHFRLSTTQIYTNV 301
           ++  +LGH  +  TQ Y  V
Sbjct: 371 NVAKMLGHSNIKMTQHYARV 390


>gi|50058562|ref|YP_044804.1| Int [Mycoplasma phage phiMFV1]
 gi|319777316|ref|YP_004136967.1| int [Mycoplasma fermentans M64]
 gi|49354301|gb|AAT65031.1| Int [Mycoplasma phage phiMFV1]
 gi|49354324|gb|AAT65052.1| Int [Mycoplasma phage phiMFV1]
 gi|49354346|gb|AAT65072.1| Int [Mycoplasma phage phiMFV1]
 gi|318038391|gb|ADV34590.1| Int [Mycoplasma fermentans M64]
          Length = 363

 Score = 42.7 bits (99), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 91/208 (43%), Gaps = 28/208 (13%)

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
           +F+K+L +      +  L++ + KK     +A + ++ L + + V L       W D + 
Sbjct: 83  TFIKWLSEYTGVYINTKLDLDSFKKVGGTRQAYSMEEYLKIFNYVEL-------WGDLKF 135

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPL--------LPSVR 207
             +  +L   G+RI E  ++    ++ +  T RI+  K +  R+  +          ++R
Sbjct: 136 KLVFQILAITGVRIGELANVNWTLLVKNNFTQRIETEKKNNTRLFTIPKPETNHYFANLR 195

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + I++  D     LN+       + I+ K     +F+ Y+ +L    G+ +S  AH LRH
Sbjct: 196 QDIIDNIDFFKKGLNI-------KTIQNKF---NLFKHYVHELEPEWGIKIS--AHMLRH 243

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTT 295
            F  +   N G    +  ++GH    TT
Sbjct: 244 FFIVNAHLNIGRTEEVAKLVGHVNSQTT 271


>gi|29346363|ref|NP_809866.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338258|gb|AAO76060.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 329

 Score = 42.7 bits (99), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           GL ++ T +  RHSFAT L  +G ++  I   LGH  L+TTQIY
Sbjct: 269 GLDINLTTYVARHSFATVLKKSGVNIALISEALGHSDLATTQIY 312


>gi|86143473|ref|ZP_01061858.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
 gi|85829920|gb|EAQ48381.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
          Length = 414

 Score = 42.7 bits (99), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 16/156 (10%)

Query: 162 LLYGC--GLRISEALSLTPQNI---MDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD 215
            ++ C  GL  S+   L+  +I   +D    +RI   K      +PLLP V + IL  Y+
Sbjct: 249 FVFSCYTGLAYSDVEKLSKSDITIGIDGSKWIRIHRTKTGSRSSIPLLP-VAEQILARYE 307

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
             P        +P+    +           +++++     +    T H  RH+FAT + L
Sbjct: 308 NHPQVEESERVIPVLSNQKSNA--------FLKEIAIMCDISKPLTTHLARHTFATTVTL 359

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           +NG  + ++  +LGH  L TTQ Y  +  +   D M
Sbjct: 360 TNGVPIETVSRMLGHQSLRTTQHYAKIVDRKISDDM 395


>gi|332829912|gb|EGK02540.1| hypothetical protein HMPREF9455_00790 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 334

 Score = 42.7 bits (99), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%)

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           L LP   T + +RHS+AT +L  G  +  I   +GH  + TTQIY
Sbjct: 249 LNLPCKLTTYVMRHSWATLMLEAGKSVEIISQCMGHTSIRTTQIY 293


>gi|325696498|gb|EGD38388.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK160]
          Length = 356

 Score = 42.7 bits (99), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 97/260 (37%), Gaps = 40/260 (15%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--------PRALNEKQA 134
           +   ++ R+LS + S  KYL +     +      RN+ K  +          RA N KQ 
Sbjct: 101 VSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATKKKKETLAARAENIKQK 160

Query: 135 LTLVDNVLLHTSHETKWIDA-------------------RNSAILYLLYGCGLRISEALS 175
           L L D     T    ++ID                    R+ AI+ LL   G+R+SEA++
Sbjct: 161 LFLGD----ETEEFLQYIDTEYPKKLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVN 216

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP--FDLNLNIQLPLFRGI 233
           L  ++I      + +  KG K   V +    +  + EY  +    +              
Sbjct: 217 LDLKDINLKMMVIEVTRKGGKRDSVNVAAFAKSYLEEYLSIRSKRYKAEKTDTAFFLTEY 276

Query: 234 RGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           RG P  ++    ++ + +        +  T H LRH+ AT L         +   LGH  
Sbjct: 277 RGTPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQLGHAS 334

Query: 292 LSTTQIYTNV---NSKNGGD 308
              T +YT++     KN  D
Sbjct: 335 TQVTDLYTHIVNDEQKNALD 354


>gi|255008616|ref|ZP_05280742.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313146347|ref|ZP_07808540.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313135114|gb|EFR52474.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 409

 Score = 42.7 bits (99), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 56/259 (21%), Positives = 116/259 (44%), Gaps = 28/259 (10%)

Query: 53  YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
           Y  + +    + +L   + +AF ++ +   I   +++  L+ +K   +   K+  + + +
Sbjct: 152 YKVKDLAFGQLTELFIHDYQAFATEEKGYAID--TVRHHLAILKKICRLAYKKGYSEKCH 209

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRI 170
             +    K+S   PRAL+ +++   + +V +    ++  + AR+      L+ C  G+  
Sbjct: 210 FQHFALPKQSERTPRALS-RESFEKIRDVEIPAYRKSHML-ARD----LFLFACYTGVSY 263

Query: 171 SEALSLTPQNIMDDQST---LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF-DLNLNIQ 226
           ++A+S+T +N+  D +    L+ + K ++ R      SV+        L  + D      
Sbjct: 264 ADAVSITDENLYTDDNGALWLKYRRKKNEHR-----ASVKLLPEALALLEKYKDKTRETL 318

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQS 285
            PL R            +R+++ L     +      H  RHSFA+ + L  G  + +I  
Sbjct: 319 FPLLRW--------SNLRRHMKALAALADIKDDLCYHQARHSFASLITLEAGVPIETISR 370

Query: 286 ILGHFRLSTTQIYTNVNSK 304
           +LGH  +STTQ+Y  V+ K
Sbjct: 371 MLGHSDISTTQVYARVSPK 389


>gi|224024425|ref|ZP_03642791.1| hypothetical protein BACCOPRO_01149 [Bacteroides coprophilus DSM
           18228]
 gi|224017647|gb|EEF75659.1| hypothetical protein BACCOPRO_01149 [Bacteroides coprophilus DSM
           18228]
          Length = 412

 Score = 42.7 bits (99), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 76/165 (46%), Gaps = 15/165 (9%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI- 199
           L+    E K ++       +  Y  GL  ++   L+ ++++ D+   L I+    K +  
Sbjct: 237 LMEKDFEIKRLEQVRDVFAFCCYT-GLAFADVHQLSKEHLVRDNDGNLWIRKARQKTKQM 295

Query: 200 --VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
             +P++   RK +++ Y   P  +  N+ LP+   +  + +N      Y++++    G+ 
Sbjct: 296 CNIPVISPARK-LIDKYSHQPDCIAKNVLLPV---LSNQKMNA-----YLKEIADICGIQ 346

Query: 258 LSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              T H  RH+ AT + L+N   + ++  ILGH  +  TQ Y  V
Sbjct: 347 KRLTTHVARHTAATVVFLANEVSMENVAKILGHSNIRMTQHYAKV 391


>gi|160890395|ref|ZP_02071398.1| hypothetical protein BACUNI_02836 [Bacteroides uniformis ATCC 8492]
 gi|156860127|gb|EDO53558.1| hypothetical protein BACUNI_02836 [Bacteroides uniformis ATCC 8492]
          Length = 382

 Score = 42.7 bits (99), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 33/58 (56%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           G   + ++ L   LG+  + T +  RHSFA+ L  +G ++  I   LGH  L+TTQIY
Sbjct: 308 GKVNKNLKLLAAQLGVEANLTTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIY 365


>gi|149907695|ref|ZP_01896442.1| hypothetical protein PE36_07397 [Moritella sp. PE36]
 gi|149809365|gb|EDM69294.1| hypothetical protein PE36_07397 [Moritella sp. PE36]
          Length = 401

 Score = 42.7 bits (99), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 38/69 (55%)

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           +GKP+    +   I +    +  P     HT RHS A++L+SNG D+ S+Q +L H  +S
Sbjct: 315 KGKPIGAPRYSFDIIKQMAGIENPDEVLLHTARHSVASNLISNGVDISSVQKLLNHKDIS 374

Query: 294 TTQIYTNVN 302
           +T  Y  ++
Sbjct: 375 STLRYAKLS 383


>gi|332521734|ref|ZP_08398185.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
 gi|332042564|gb|EGI78765.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
          Length = 414

 Score = 42.7 bits (99), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 77/194 (39%), Gaps = 29/194 (14%)

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC-GLRISEALSLTPQ 179
           ++  + +ALN K+   L D       +E+K  D       +  + C G+   +   L   
Sbjct: 215 RTKKVKKALNSKELKVLFD-AKPANENESKAKD-----FWFFSFACNGINPKDIALLKYS 268

Query: 180 NIMDDQSTL----RIQGKGDKIRIVPLLPSVRKAILEYY-----DLCPFD-LNLNIQL-P 228
           +I DD+ T         K +K  I+  L     +I+E Y     +   FD LN N     
Sbjct: 269 DIKDDKFTYYRAKTFDKKAEKTEIIIYLTDFTNSIIEKYGSKNKNSFVFDILNENDDANE 328

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLG----LPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
             + I+        F RYI    + L     LP   + +  RHSFAT+ L  G  +  I 
Sbjct: 329 QHKKIKN-------FTRYINDHIKRLAVANKLPSDISFYYARHSFATNSLRKGASMEFIS 381

Query: 285 SILGHFRLSTTQIY 298
             L H  LS T+ Y
Sbjct: 382 EALNHSDLSVTKNY 395


>gi|290969281|ref|ZP_06560806.1| site-specific recombinase, phage integrase family [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290780787|gb|EFD93390.1| site-specific recombinase, phage integrase family [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 411

 Score = 42.7 bits (99), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 75/192 (39%), Gaps = 47/192 (24%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------------------G 194
           ++I  +L G G RI E + L   +I  ++ T+ I                          
Sbjct: 205 NSIFTVLLGTGCRIGEVVGLRWSDIDMEKRTIDINHSMTYYPRRTDTYKCEFKVSLPKTE 264

Query: 195 DKIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
              RI+P++  V +A+   Y+       C   ++  +   +F    G   NP    R IR
Sbjct: 265 AGTRILPMMQPVYEALQSEYERQKEDGFCTAVVD-GMSGFIFSNRFGMIHNPAAINRAIR 323

Query: 249 QL----------------RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           ++                R  + +P   + H LRH+F +    N  +++ IQ I+GH  +
Sbjct: 324 RILGAHNAEEIVKAKKEKREPIIIP-HFSCHHLRHTFCSRFCENETNIKIIQEIMGHASI 382

Query: 293 STT-QIYTNVNS 303
            TT  IY  VNS
Sbjct: 383 ETTMDIYAEVNS 394


>gi|239623188|ref|ZP_04666219.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522555|gb|EEQ62421.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 88

 Score = 42.7 bits (99), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
           W+  RN AI+ L+   G+R +E  +L  + +  D+  L++ GK  K R+VP L  + K +
Sbjct: 20  WLTTRNKAIIALMLDSGIRQNEVCTLVKKGLDFDRGALQVTGKVSKDRLVP-LGYISKML 78

Query: 211 LEYY 214
           LE Y
Sbjct: 79  LEDY 82


>gi|159904432|ref|YP_001548094.1| integrase family protein [Methanococcus maripaludis C6]
 gi|159885925|gb|ABX00862.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 324

 Score = 42.7 bits (99), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 9/165 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEY 213
           R++ I+ +L+  G R SEAL++  ++   ++   RI+  K  + R V +     + + +Y
Sbjct: 156 RDALIVRVLWETGCRRSEALNIRYKDCDFEKGRFRIRDTKTYEERTVVIAQETVEILRDY 215

Query: 214 Y-DLCPFDLNLNI-QLPLFRGIRGKPLN--PGVFQRYIRQLRR--YLGLPLSTTAHTLRH 267
             +    D N  I Q  + +  +   L+    VF++ +R+L+    +        H+LRH
Sbjct: 216 IKENIRRDSNDYIFQNEMIQNGKRVKLDWITNVFKKAVRKLKEEGVIQEGKRIVIHSLRH 275

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             AT LL  G  +  ++ ILGH  L TT  Y+  +SK   D M++
Sbjct: 276 GRATDLLDKGVPIDVVKEILGHRSLETTLYYS--HSKERKDGMLD 318


>gi|315648611|ref|ZP_07901708.1| integrase/recombinase XerD, putative [Paenibacillus vortex V453]
 gi|315275990|gb|EFU39338.1| integrase/recombinase XerD, putative [Paenibacillus vortex V453]
          Length = 235

 Score = 42.7 bits (99), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 6/141 (4%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           LLY  G+R+SE +++   ++      +RI +GKG+K RIVP   S ++ +  + D     
Sbjct: 82  LLY-TGVRVSELINIKLSDVDFHYCQIRINKGKGNKDRIVPFPQSFKEMLAMHAD----S 136

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
           +     + LF     K       ++ + +     GL  + + H LRH   T L   G D 
Sbjct: 137 MKKKQAVYLFESSWKKKYTDRGIRKILAKYSEEAGLVQNLSPHKLRHFLLTWLKKQGIDD 196

Query: 281 RSIQSILGHFRLSTTQIYTNV 301
             IQ   GH    + ++Y+ +
Sbjct: 197 ALIQPYSGHESRKSLEVYSKL 217


>gi|227534407|ref|ZP_03964456.1| possible DNA integration/recombination/invertion protein
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227187961|gb|EEI68028.1| possible DNA integration/recombination/invertion protein
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 204

 Score = 42.7 bits (99), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 31/180 (17%)

Query: 151 WIDARN----SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-----QGKGDKIRIVP 201
           +IDA+     +++  +L   GLR  E L+LT ++I    ST+ +     QG   +  + P
Sbjct: 9   YIDAKQEPQKTSLFRILAFGGLRRGECLALTWKDISFTDSTITVNKTLSQGMNGRQLVQP 68

Query: 202 LLPSVRKA------------ILEYYDLCPFD----LNLNIQLP---LFRGIRGKPLNPGV 242
             P  RK+             L+++ L        L  N   P   +F   + K L    
Sbjct: 69  --PKTRKSRRTITMDSKTMSALKHWRLVQLQKYMALGFNTNKPDQLVFSNRKNKHLLLHK 126

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
              +++ +     +    T H  RHS A+ L S G  ++ +Q  LGH  + TT  IYT+V
Sbjct: 127 PADWLKSIEDAHKIKHRITIHGFRHSHASALFSAGATVKEVQERLGHSDVKTTLNIYTHV 186


>gi|150004395|ref|YP_001299139.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
           8482]
 gi|149932819|gb|ABR39517.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
           8482]
          Length = 386

 Score = 42.7 bits (99), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 51/175 (29%)

Query: 152 IDARNSAILY----LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           +  RNS + +     L+ C  GLR S+ ++L  +NI      +++ GK     +  +  S
Sbjct: 223 LTGRNSCLEHTLDAFLFCCYTGLRYSDFVNLNEKNI------VKMDGK-----LWLIFDS 271

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA--- 262
           V+                 ++LPL     GK L   + Q+Y  +   +  +  +++    
Sbjct: 272 VKTGT-------------EVKLPLNLLFEGKALT--LLQKYQGKWSSFFSIKNNSSVNKE 316

Query: 263 ----------------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                           H+ RH+ AT L+  G ++ ++Q +LGH  L+TTQIY  V
Sbjct: 317 LIRIGKLAKISKHFSFHSARHTNATLLIYKGANITTVQKLLGHKNLATTQIYGEV 371


>gi|148983887|ref|ZP_01817206.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP3-BS71]
 gi|147924034|gb|EDK75146.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP3-BS71]
 gi|301799575|emb|CBW32127.1| putative phage integrase/recombinase [Streptococcus pneumoniae
           OXC141]
          Length = 265

 Score = 42.7 bits (99), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 8/141 (5%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +++ L   G R+SE + L  +++  +     I  KG KIR + +   +R + L +     
Sbjct: 114 VVWFLGATGARVSELIKLKVEHV--EIGYFDIYSKGGKIRRLYIPKKLRNSCLSW----- 166

Query: 219 FDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            +        LF     +P+   GV Q+      +Y   P     H+ RH FA + L+  
Sbjct: 167 LESENRRSGYLFLNKFNEPITARGVAQQLKNYADKYKMNPKVIYPHSFRHLFAKNFLAKY 226

Query: 278 GDLRSIQSILGHFRLSTTQIY 298
            D+  +  ++GH  + TT+IY
Sbjct: 227 NDIALLADLMGHESIETTRIY 247


>gi|186474604|ref|YP_001863575.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198563|gb|ACC76525.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 309

 Score = 42.7 bits (99), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 32/165 (19%)

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           YG G+RI EALSLT Q++      + I+  K  K R+VP+ P +   + +Y       L 
Sbjct: 133 YGTGMRIGEALSLTIQDVDLLTRVIIIRDTKFYKTRMVPIGPRLTMVLADY-------LG 185

Query: 223 LNIQLPLFRGIRGKPLNP------------GVFQRYIRQ---LRRYLGLPLSTTAHTLRH 267
              QLPL  G     L+             G F+R +RQ   +RR  G       H +RH
Sbjct: 186 HRSQLPLPAGDSSVFLSTRTGHRLTYAWINGQFRR-VRQAADIRREDGARYQPRIHDIRH 244

Query: 268 SFATHLL---SNGGD-----LRSIQSILGHFRLSTTQIYTNVNSK 304
           + A H +      GD     L  + +  GH  +++TQ Y ++ ++
Sbjct: 245 TAAVHRIIAWYRAGDDVQRLLPQLATYFGHVGVASTQQYISITTE 289


>gi|32455522|ref|NP_862274.1| ORF-2 [Lactobacillus sakei]
 gi|24461249|gb|AAN61996.1|AF438419_6 ORF-2 [Lactobacillus sakei]
          Length = 319

 Score = 42.7 bits (99), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 4/151 (2%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI+  L   G+R+ E ++L    I   + +  + GKG+  R V    +  K  LE Y
Sbjct: 163 RDRAIVEFLASTGVRVGEIVNLDINAIRLAERSAIVLGKGNSEREV-YFDARTKIHLERY 221

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                D N  + +   R      L  G  +  ++++     L      H  R + AT  +
Sbjct: 222 LKTRTDKNEALFVSHKRP--NNRLTIGTIESIVKKIGEK-SLVNHVHPHKFRRTLATRAI 278

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             G  +  +Q +LGH R+ TT  Y  VN  N
Sbjct: 279 DKGMPIEQVQKLLGHVRIDTTMNYAMVNQTN 309


>gi|26248740|ref|NP_754780.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli CFT073]
 gi|170684288|ref|YP_001744556.1| type 1 fimbriae regulatory protein [Escherichia coli SMS-3-5]
 gi|218700831|ref|YP_002408460.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli IAI39]
 gi|227887412|ref|ZP_04005217.1| integrase family protein [Escherichia coli 83972]
 gi|293415644|ref|ZP_06658287.1| type 1 fimbriae regulatory protein [Escherichia coli B185]
 gi|300983732|ref|ZP_07176713.1| putative type 1 fimbriae regulatory protein FimB [Escherichia coli
           MS 45-1]
 gi|301024204|ref|ZP_07187908.1| putative type 1 fimbriae regulatory protein FimB [Escherichia coli
           MS 69-1]
 gi|301049117|ref|ZP_07196098.1| putative type 1 fimbriae regulatory protein FimB [Escherichia coli
           MS 185-1]
 gi|331648028|ref|ZP_08349118.1| type 1 fimbriae regulatory protein FimB [Escherichia coli M605]
 gi|331663927|ref|ZP_08364837.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA143]
 gi|26109146|gb|AAN81348.1|AE016764_30 Type 1 fimbriae Regulatory protein fimB [Escherichia coli CFT073]
 gi|170522006|gb|ACB20184.1| type 1 fimbriae regulatory protein, FimB family [Escherichia coli
           SMS-3-5]
 gi|218370817|emb|CAR18630.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli IAI39]
 gi|227835762|gb|EEJ46228.1| integrase family protein [Escherichia coli 83972]
 gi|291433292|gb|EFF06271.1| type 1 fimbriae regulatory protein [Escherichia coli B185]
 gi|300299063|gb|EFJ55448.1| putative type 1 fimbriae regulatory protein FimB [Escherichia coli
           MS 185-1]
 gi|300396659|gb|EFJ80197.1| putative type 1 fimbriae regulatory protein FimB [Escherichia coli
           MS 69-1]
 gi|300408461|gb|EFJ91999.1| putative type 1 fimbriae regulatory protein FimB [Escherichia coli
           MS 45-1]
 gi|307554411|gb|ADN47186.1| type 1 fimbriae regulatory protein [Escherichia coli ABU 83972]
 gi|315292310|gb|EFU51662.1| putative type 1 fimbriae regulatory protein FimB [Escherichia coli
           MS 153-1]
 gi|331042888|gb|EGI15028.1| type 1 fimbriae regulatory protein FimB [Escherichia coli M605]
 gi|331059726|gb|EGI31703.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA143]
          Length = 189

 Score = 42.7 bits (99), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 69/162 (42%), Gaps = 23/162 (14%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           + R+ A+L + Y  GLR+SE ++L   +I   +S + I+   + +  V   P  ++ +L 
Sbjct: 23  EIRDKAMLQMAYVHGLRVSELIALKISDIDFSESAIYIKRLKNGLSTVH--PLQKETVLL 80

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------QRYIRQLRRY-LGLPLSTT 261
                     L   L L   I  KP    +F          Q   +  ++Y   + ++  
Sbjct: 81  ----------LKKWLALRDNIVKKPFEDSLFLSCQGNKISRQYVYKMCKKYSHNMNINIH 130

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            H LRH     L + G D R IQ  LGH  +  T +YT  N+
Sbjct: 131 PHMLRHGCGYALANQGLDTRLIQDYLGHRNIHHTVLYTASNA 172


>gi|313158800|gb|EFR58184.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 259

 Score = 42.7 bits (99), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           ++ + R  G+    + H  RH++AT + LSNG  L ++  +LGH  ++TTQIY  V
Sbjct: 182 LKNIARECGIDKQLSFHLARHTYATTICLSNGVSLETLSKMLGHKNITTTQIYAKV 237


>gi|304380029|ref|ZP_07362753.1| transposase B [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|304341402|gb|EFM07317.1| transposase B [Staphylococcus aureus subsp. aureus ATCC BAA-39]
          Length = 302

 Score = 42.7 bits (99), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 64/159 (40%), Gaps = 20/159 (12%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----QGKGDKIRIVPLLPSVRKAILE 212
           + +  ++  CG+RISE  +L    +++D+         Q K  K  IVP+   V   I  
Sbjct: 23  ATMTMIVQECGMRISELCTLKKGCLLEDKDGDYFLKYYQWKMKKEHIVPISKEVVLLIKV 82

Query: 213 YYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQ------RYIRQLRRYLGLPLSTTA 262
             D       ++ + P    LF    G PL    F+       Y + +   LG      A
Sbjct: 83  RED------KVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKLGEIYRFHA 136

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H  RHS  T +++NG     +Q  LGH     T  Y ++
Sbjct: 137 HAFRHSVGTRMINNGVPQHIVQKFLGHESPEMTSRYAHI 175


>gi|302384969|ref|YP_003820791.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302195597|gb|ADL03168.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 281

 Score = 42.7 bits (99), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 72/156 (46%), Gaps = 8/156 (5%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I+  L   G R+S  + +  +++  +   L +  KG K+R +    S+ +  LE+   C 
Sbjct: 130 IVRFLAATGARVSVLVQIKVEHL--NLGYLDLYSKGGKVRRIYFPDSLCQEALEW---CH 184

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNG 277
            D +      LF    G+ + P      ++ L +  G+ P +   H+ RH FA + L+  
Sbjct: 185 -DKDKRSGF-LFLNKDGRLITPRGINSQLKHLAKRYGIDPDTVYPHSFRHRFAKNFLACF 242

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            D+  +  ++GH  + TT+IY   +S+     + EI
Sbjct: 243 NDISLLADLMGHESIETTRIYLTRSSQEQQQLLDEI 278


>gi|60681325|ref|YP_211469.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
 gi|60492759|emb|CAH07532.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
          Length = 410

 Score = 42.7 bits (99), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 12/103 (11%)

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           L  V + I+E Y+    D  L   LP+       P  P   +  I+ + ++ G+  + T 
Sbjct: 295 LLEVARHIIEKYEGMAKDGKL---LPV-------PCYPNC-KNGIKVIAKHCGIDKNVTW 343

Query: 263 HTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           H  RHS+AT + LSN   + ++  +LGH  + TTQIY  + ++
Sbjct: 344 HQSRHSYATTVCLSNDVPIETLSKMLGHRSIRTTQIYAKITAE 386


>gi|330890059|gb|EGH22720.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 321

 Score = 42.7 bits (99), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 27/127 (21%), Positives = 61/127 (48%)

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            + A ++  R       +    ++ I+  +    +  + +   +L +R++K  +    A 
Sbjct: 71  HVTALVATLREDDYAPNTTSLYVNAIRGVMNEAWRHDLISHEQLLKIRSIKPVSGTRLAK 130

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
                 TL+  ++   + + +    R++AI+ +LYG G+R SE+++L    I   + +LR
Sbjct: 131 GRNIRRTLIRELMQACAADPRPQGRRDAAIIAILYGSGMRKSESVNLDLSQIDFAERSLR 190

Query: 190 IQGKGDK 196
           + GKG+K
Sbjct: 191 VLGKGNK 197


>gi|315608578|ref|ZP_07883562.1| integrase [Prevotella buccae ATCC 33574]
 gi|315249749|gb|EFU29754.1| integrase [Prevotella buccae ATCC 33574]
          Length = 400

 Score = 42.7 bits (99), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 24/158 (15%)

Query: 162 LLYGC--GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVRKAILEYYD 215
            ++ C  GL   +   L P +I    + +  +RI  K  KI   +PL P + + IL+ Y+
Sbjct: 246 FIFSCFTGLAYVDTQLLYPHHIGRTAEGRRYIRINRKKTKIESFIPLHP-IAEQILDLYN 304

Query: 216 LCPFDLNLNIQLPLFRGIRGKPL---NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                   +   P+F      PL   +   F+  I +L   +G   + + H  RHSF + 
Sbjct: 305 ------TTDDTQPVF------PLPSRDSMWFE--IHELGVIIGRKENLSYHQARHSFGSF 350

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           L+S G    SI  ++GH  +++TQ Y  ++ K   + M
Sbjct: 351 LISEGICTESIAKMMGHASITSTQTYAKISEKKIAEDM 388


>gi|149918976|ref|ZP_01907461.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149820129|gb|EDM79548.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 398

 Score = 42.7 bits (99), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 23/156 (14%)

Query: 166 CGLRISEALSLTPQNIMD--------DQSTLRIQG----KGDKIRIVPLLPSVRKAILEY 213
            GLR+ E ++L  +  +D        +QS     G    K DK R +PL    R A+   
Sbjct: 213 TGLRVGEMIALRWREDIDLQRGRISVNQSWSVENGFTSTKSDKRRELPLTWDARDALEAQ 272

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                    + +Q  L     G P +  G  Q  I ++   L +      H LRH+FA+H
Sbjct: 273 --------RVRVQGKLVFPREGAPTHSAGTVQYAIDKITEALEM-RHLHNHVLRHTFASH 323

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            +  G  +R +Q  LGH  ++TT  Y ++ S+  GD
Sbjct: 324 AVMRGVPMRQVQEWLGHQSITTTMRYAHL-SRGYGD 358


>gi|332366899|gb|EGJ44640.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK1059]
          Length = 357

 Score = 42.7 bits (99), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 103/276 (37%), Gaps = 41/276 (14%)

Query: 68  YTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL- 125
           Y   R  ++   TQ  +   ++ R+LS + S  KYL +     +      RN+ K  +  
Sbjct: 86  YLRERPLLNANTTQNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATK 145

Query: 126 -------PRALNEKQALTLVDNVLLHTSHETKWIDA-------------------RNSAI 159
                   RA N KQ L L D     T    ++ID                    R+ AI
Sbjct: 146 KKKETLAARAENIKQKLFLGD----ETEEFLQYIDTEYPKKLSNRALSSFNKNKERDLAI 201

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP- 218
           + LL   G+R+SEA++L  ++I      + +  KG K   V +    +  + EY  +   
Sbjct: 202 IALLLASGVRLSEAVNLDLKDINLKMMVIEVTRKGGKRDSVNVAAFAKPYLEEYLSIRSK 261

Query: 219 -FDLNLNIQLPLFRGIRGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
            +              RG P  ++    ++ + +        +  T H LRH+ AT L  
Sbjct: 262 RYKAEKTDTAFFLTEYRGTPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYD 319

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGD 308
                  +   LGH     T +YT++     KN  D
Sbjct: 320 ATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 355


>gi|312114527|ref|YP_004012123.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311219656|gb|ADP71024.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 211

 Score = 42.7 bits (99), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 14/153 (9%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
           N AI   L GC +   +   + P     +++T+R +  G  +R   +    R+++ EY  
Sbjct: 54  NLAIDSKLRGCDVVALKVEDVAPHGYAVERATVRQRKTGRPVRF-EITEQTRQSVDEY-- 110

Query: 216 LCPFDLNLNIQLP---LFRGIRG--KPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSF 269
                L +  + P   LF G RG  + L    + R +      +GL  S    H+LR + 
Sbjct: 111 -----LRVTQRKPGYFLFGGRRGEERSLTTRQYARLVSTWVAMVGLDASLFGTHSLRRTK 165

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           AT +    G+LR++Q +LGH ++ +T  Y  V 
Sbjct: 166 ATLIYRKTGNLRAVQLLLGHTKIESTVRYLGVE 198


>gi|300920376|ref|ZP_07136811.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 115-1]
 gi|300412592|gb|EFJ95902.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 115-1]
          Length = 395

 Score = 42.7 bits (99), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 29/214 (13%)

Query: 89  KRSLSGIKS-----FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV-- 141
           K  +SGI+      F+K  ++  + + S + + R L+ ++S  R  + +     +D+   
Sbjct: 98  KNIISGIRERQLNEFVKLNQRLPMPSNSGVDHWRPLRLASSYYRIKDNEWTPEYLDDPGL 157

Query: 142 ---LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQST---LRIQGK 193
              +L       W   +++AI+ +++  G RI EA SLT Q+  I   ++T   L    +
Sbjct: 158 MGRVLKAGESGGW-SLQDTAIVRIIFDTGCRIHEACSLTLQDWQISGFRNTFIALNKGSR 216

Query: 194 GDKIRIVPLLPSVRKAILEY----------YDLCPFDL-NLNIQ-LPLFRGIRGKPLNPG 241
           G +++ + +     K +L Y          Y     DL + NIQ LP+F   RG PL   
Sbjct: 217 GKRVKNIIITDKTLKILLRYIRNDRPELQAYLSGRIDLPSRNIQPLPIFVTKRGHPLTSD 276

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
            F+RY R         L+   H +RH F T  L+
Sbjct: 277 YFRRY-RWTPVLTAAGLNIRTHQIRHWFVTMALN 309


>gi|298244075|ref|ZP_06967881.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297551556|gb|EFH85421.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 379

 Score = 42.7 bits (99), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 47/99 (47%), Gaps = 7/99 (7%)

Query: 229 LFRGIRGKPLNPGVFQRY-IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           +F    G  L+P     Y ++QL +  GLP     H LRH  AT LLS     + +Q IL
Sbjct: 281 VFCAHDGTYLSPNHVSSYQLKQLLKAAGLP-DIRFHDLRHGAATLLLSLQVHPKVVQEIL 339

Query: 288 GHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           GH  +STT  IY++V      D M     Q H +  Q D
Sbjct: 340 GHSDISTTMNIYSHVLPSMQADAM----KQLHSAFKQDD 374


>gi|298252095|ref|ZP_06975898.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297546687|gb|EFH80555.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 338

 Score = 42.7 bits (99), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 30/164 (18%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAI 210
           AR+ A+L +    G R+SE ++L  +++    S + +     KG K     L P +  A+
Sbjct: 164 ARDYAMLAIFLQTGRRLSEVIALRWRHVQVQGSKIILVFENCKGGKAMRDTLTPGIANAL 223

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT--------- 261
           LE+  L  +  NL          R  P  P ++  + RQ  R   LP   T         
Sbjct: 224 LEWLVLA-YGANLR---------RLHPEAP-IWISFTRQAERDGTLPTPLTIRSVANICE 272

Query: 262 -------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                   H  RH++A  +   G  +  IQ+ LGH  L+TT  Y
Sbjct: 273 KHLGTSKVHVTRHTWARTMEDAGAKVSEIQARLGHESLATTGRY 316


>gi|293568954|ref|ZP_06680267.1| phage integrase family protein [Enterococcus faecium E1071]
 gi|291588387|gb|EFF20222.1| phage integrase family protein [Enterococcus faecium E1071]
          Length = 378

 Score = 42.7 bits (99), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSK 304
            L LS   H+LRH+ AT LL NG  ++ I   LGH R+S T   Y++V  K
Sbjct: 312 ALSLSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDK 362


>gi|254454307|ref|ZP_05067744.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198268713|gb|EDY92983.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 422

 Score = 42.7 bits (99), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +R+ ++++R  G+      H LRH+FA+ L+S G  L  I  +LGH ++ TTQ Y ++
Sbjct: 319 RRFWKRIQREAGIE-DVRIHDLRHTFASLLVSGGASLEMIGKLLGHSQMQTTQRYAHL 375


>gi|150019810|ref|YP_001312064.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149906275|gb|ABR37108.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 312

 Score = 42.7 bits (99), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 22/168 (13%)

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLL 203
           ++  +I+ RN  I  +LY  G+R S  ++L  ++I  D     I  K  K R   ++P+ 
Sbjct: 135 NKCNFIEFRNWVICNVLYATGIRSSNLINLQIKDI--DLCNNLISMKTTKNRKPLVIPIT 192

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP----GVFQRYI--RQLRRYLGLP 257
            S++  + EY  +       N +  LF    G  ++     G  + Y   R+++R     
Sbjct: 193 KSLQPILREYLAI----RKGNEEDYLFCSAYGDKISKVALNGSMRTYNNGRRVKR----- 243

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             T  H  RH+FA   + N GD+  +Q IL H  L   + Y N+ +K+
Sbjct: 244 --TGIHRWRHTFAKQWILNHGDIIRLQKILNHSDLDMVRNYVNMFTKD 289


>gi|322411006|gb|EFY01914.1| phage integrase family site specific recombinase [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 596

 Score = 42.7 bits (99), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 20/158 (12%)

Query: 152 IDARNSAILYLL---YGCGLRISEALSLTPQNI-------------MDDQSTLRIQGKGD 195
           +D  NS + YLL   +  GLR+ EAL+LT  ++               D+ T        
Sbjct: 409 LDYSNSIVYYLLLVLFKTGLRVGEALALTWDDVNFEDLEIKTYRRFSGDKGTFSPPKTKT 468

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLN----LNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            IR +P+  S+   +    D     L     +NI   +F   R    +     + +R + 
Sbjct: 469 SIRTIPISQSLGLILKRLKDDQQVMLKNLKIVNINNQIFYDYRYGVSSNSAINKSLRNVL 528

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
             L +    TA   RH++ ++LL+ G D+  +  ++GH
Sbjct: 529 HVLNIDSKMTATGARHTYGSYLLAKGVDIWVVARLIGH 566


>gi|304360798|ref|YP_003856919.1| gp41 [Mycobacterium phage Angelica]
 gi|302858382|gb|ADL71130.1| gp41 [Mycobacterium phage Angelica]
          Length = 362

 Score = 42.7 bits (99), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 123/314 (39%), Gaps = 66/314 (21%)

Query: 21  WLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           WL++ L+ + G+ K T+  YE         +A   +  +    +  L+  +I  ++    
Sbjct: 71  WLRHYLDHKTGVEKSTIYDYEK-------VVAKDIDPALGPIPLAALTGDDIAKWV---- 119

Query: 80  TQKIGDRSLK-RSLSGIKSFLKYLKKRKITTESNILNMR--------NLKKSNSLPRA-- 128
            Q + DR LK +++S    FL           S+ LN          N      LPR   
Sbjct: 120 -QALADRGLKGKTISNKHGFL-----------SSALNAAVRAGRIPGNPAAGARLPRTEK 167

Query: 129 -----LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
                L  +Q   L DN+ L       W       ++  L   G R  E ++L P ++  
Sbjct: 168 AEMVFLTREQYAKLHDNITL------PW-----QPLVEFLVASGARWGEVVALRPSDVNR 216

Query: 184 DQSTLRIQ-------GKGDKIRIVP-LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           D ST+RI         KG      P  L S R   ++   L   D +      LF    G
Sbjct: 217 DASTVRISRASKRTYEKGSYALGAPKTLKSRRTINVDASVLGKLDYSGEY---LFTNTVG 273

Query: 236 KPLNPGVFQRYIRQ--LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            P+    F   + Q  L+R  GL +    H LRH+ A+ L++ G  L +I+  LGH  + 
Sbjct: 274 NPVRHNNFHANVWQPALKR-AGLDVKPRVHDLRHTCASWLIAAGVPLPAIRDHLGHESIK 332

Query: 294 -TTQIYTNVNSKNG 306
            T   Y +++  +G
Sbjct: 333 ITVDTYGHLDRSSG 346


>gi|302036632|ref|YP_003796954.1| putative integrase [Candidatus Nitrospira defluvii]
 gi|300604696|emb|CBK41028.1| putative Integrase [Candidatus Nitrospira defluvii]
          Length = 356

 Score = 42.7 bits (99), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 104/232 (44%), Gaps = 19/232 (8%)

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIK-SFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           I A+ +KR    +   ++ R L+ +K +F    ++ + T ++ +  +   +++N+  R L
Sbjct: 105 IVAYKNKRYADGVTPATINRELALMKKAFNLACREWEWTKDNPVCRVSMERENNTRDRWL 164

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTL 188
             ++   L+       +    W+      I++ ++  GLR  E L+LT   + ++ ++  
Sbjct: 165 TCEEERRLL-------AASAPWL---QEVIVFAIH-TGLRCGEILNLTWAGVDLNRRTAT 213

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
             + K  + R +PL  ++ +A+         D  L     +F      PL+    +R  R
Sbjct: 214 VFKSKNGERRTIPLSHTLVQALQNKARGRRMDSEL-----VFTSAAHTPLDAPNLRRSFR 268

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              ++ G  L    H LRH+ AT ++  G DL  +Q ILGH     TQ Y +
Sbjct: 269 LALKH-GQVLDFRFHDLRHTSATRMVQAGVDLYKVQRILGHKSPMMTQRYAH 319


>gi|260886001|ref|ZP_05736317.2| integrase/recombinase [Prevotella tannerae ATCC 51259]
 gi|260850862|gb|EEX70731.1| integrase/recombinase [Prevotella tannerae ATCC 51259]
          Length = 298

 Score = 42.7 bits (99), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 72/164 (43%), Gaps = 23/164 (14%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210
           +  R+ AIL L    GLR S+   L  +++  D + +   Q K  K   +PLL  V +AI
Sbjct: 115 VGKRDYAILLLATRLGLRASDICRLKFEHLDWDHNIIAFTQYKTRKAIELPLLTEVGEAI 174

Query: 211 LEYYDLC-PFDLNLNIQL-------PLFR-GIRGKPLNPGVFQRYIRQLRRYLGLPLST- 260
           + Y     P   +  I L       P+FR GI             I ++ R  G+ +S  
Sbjct: 175 VNYLRYSRPISRHPEIFLSARPPYRPMFRWGINNA----------ISRIMRESGIDISGR 224

Query: 261 --TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               H +RHS A+ LL+NG  L  I   LGH    +T  Y  V+
Sbjct: 225 KFGPHAMRHSLASRLLANGVSLPVISESLGHDSSLSTMEYLRVD 268


>gi|325268477|ref|ZP_08135107.1| integrase [Prevotella multiformis DSM 16608]
 gi|324989005|gb|EGC20958.1| integrase [Prevotella multiformis DSM 16608]
          Length = 409

 Score = 42.7 bits (99), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +Q  ++ LR   G+    T+HT RH+FAT + L  G  + ++  +LGH  +S T+ Y  V
Sbjct: 327 YQSCLKALRLRAGISFPFTSHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKV 386

Query: 302 N 302
            
Sbjct: 387 T 387


>gi|300726813|ref|ZP_07060243.1| integrase [Prevotella bryantii B14]
 gi|299775926|gb|EFI72506.1| integrase [Prevotella bryantii B14]
          Length = 431

 Score = 42.7 bits (99), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 31/59 (52%)

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           +  G+    + H  RH+F T  LS G  + SI  ++GH  +S+TQ+Y  V  K   + M
Sbjct: 339 KACGIRQRLSFHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDKKISEDM 397


>gi|299142713|ref|ZP_07035842.1| integrase [Prevotella oris C735]
 gi|298575742|gb|EFI47619.1| integrase [Prevotella oris C735]
          Length = 333

 Score = 42.7 bits (99), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 66/149 (44%), Gaps = 18/149 (12%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMD----DQSTLRIQGKGDKIRI-VPLLPSVRKAILE 212
             L+ +Y  GLR S+ + +T Q+I +        +R+Q    ++RI +  +   + A L 
Sbjct: 184 GFLFSVYS-GLRFSDIVQVTKQHIKNIYRNKWVVMRMQKTDHEVRIPISKMFGGKAAAL- 241

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                    N      LF+     P N        R L+R+  +    T H  RH+ AT 
Sbjct: 242 ------VQENKTTTGKLFQ----LPCNARCNIVLKRVLKRF-NIHKHITFHCARHTCATV 290

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LL  G  L  IQ ILGH  + TTQ+Y+ V
Sbjct: 291 LLGKGVSLPIIQHILGHQSIKTTQVYSAV 319


>gi|296164066|ref|ZP_06846689.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295900614|gb|EFG79997.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 751

 Score = 42.7 bits (99), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 65/318 (20%), Positives = 119/318 (37%), Gaps = 51/318 (16%)

Query: 19  QNWLQNLEIERGLSKLTL-----QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           Q WL++L       +L++     Q+Y  D +       F     + I ++  ++   +  
Sbjct: 315 QPWLRDLAKRFARWRLSIGRSPNQTY-IDVQAVTRLAGFLASPPVDITSLAGINRAVLER 373

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK----ITTESNILNMRNLKKSNSLPRAL 129
           +++   T      S  R +S + +FL  +++ +    +   +        K +  LPR L
Sbjct: 374 YLADLSTDPRALHSRSRDISSLGAFLDAIRRHEWDHDLPASAAFYPDDFPKPAKRLPRGL 433

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQS 186
            E      +   +   ++   W +  +  +  +L  CGLR+ +A  +    ++   D   
Sbjct: 434 AEH-----IMAQVEQPANLDGWNNPESRLLTIILMRCGLRVGDATKIAFDCVIRGGDGAP 488

Query: 187 TLR-IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-------L 238
            LR   GK  +  +VP+   V +AI E             Q  L R   G P       +
Sbjct: 489 YLRYTNGKMKREALVPIDEEVEQAIAE-----------QQQRILRRWTNGSPWLFAAPKM 537

Query: 239 NPG-----VFQRYIRQLRRYL---------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
           NP          Y  QLR +L         G P+  T H  RH+F T L++       ++
Sbjct: 538 NPDGRRPLTTPSYRGQLRDWLARCEIRDEHGRPVHLTPHQWRHTFGTRLINRDVPQEVVR 597

Query: 285 SILGHFRLSTTQIYTNVN 302
            +L H     T  Y  ++
Sbjct: 598 VLLDHSSGEMTAHYARLH 615


>gi|256838475|ref|ZP_05543985.1| integrase [Parabacteroides sp. D13]
 gi|256739394|gb|EEU52718.1| integrase [Parabacteroides sp. D13]
          Length = 419

 Score = 42.7 bits (99), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 20/149 (13%)

Query: 160 LYLLYG-CGLRISEALSLTPQNI---MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYY 214
           LYL     GL  ++  +LT +NI    D+   + I + K   +  + LL   ++ I +Y 
Sbjct: 257 LYLFCAFTGLSFADMRNLTEENIHTYFDEHEWININRQKTGVVSNIRLLDIAKRIIDKYR 316

Query: 215 DLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            LC    N  I  +P +                IR + +  G+    T H  RH+ AT +
Sbjct: 317 GLCG---NGRIFPVPHYNTCLAG----------IRSVAKRCGITKHITWHQSRHTAATTV 363

Query: 274 -LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            LSNG  + ++ S+LGH  + TTQIY  +
Sbjct: 364 FLSNGVPIETVSSMLGHKSIKTTQIYAKI 392


>gi|256843226|ref|ZP_05548714.1| site-specific tyrosine recombinase XerS [Lactobacillus crispatus
           125-2-CHN]
 gi|256850416|ref|ZP_05555844.1| site-specific tyrosine recombinase XerS [Lactobacillus crispatus
           MV-1A-US]
 gi|312977456|ref|ZP_07789204.1| site-specific recombinase, phage integrase family [Lactobacillus
           crispatus CTV-05]
 gi|256614646|gb|EEU19847.1| site-specific tyrosine recombinase XerS [Lactobacillus crispatus
           125-2-CHN]
 gi|256712813|gb|EEU27806.1| site-specific tyrosine recombinase XerS [Lactobacillus crispatus
           MV-1A-US]
 gi|310895887|gb|EFQ44953.1| site-specific recombinase, phage integrase family [Lactobacillus
           crispatus CTV-05]
          Length = 347

 Score = 42.7 bits (99), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 8/169 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI  L+ G G+R+SE   +   ++    + L +  KG +   VP+       I  Y 
Sbjct: 181 RDMAIAALILGTGIRVSECAGVDLSDLNLKDAVLDVTRKGGQKDSVPIAEWTLPYIKRYK 240

Query: 215 DLCPFDLNLNI-QLPLF----RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
            +     + +  Q+  F     G + + +     ++ I +     G PL  T H LRH+ 
Sbjct: 241 GIRNERYHADSKQVAFFLTQWHG-QTRRITTNAIEKMINKYSAAFGHPL--TPHKLRHTV 297

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           A+ L     D   +   LG    S T +YT+V+ K     + EI  + H
Sbjct: 298 ASELYEVTKDQVLVAQQLGQKGTSATDLYTHVDQKKQRAALNEISKKNH 346


>gi|57235096|ref|YP_180835.1| hypothetical protein DET0084 [Dehalococcoides ethenogenes 195]
 gi|57225544|gb|AAW40601.1| conserved domain protein [Dehalococcoides ethenogenes 195]
          Length = 96

 Score = 42.7 bits (99), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           HT RH+ A + L NGGD  ++Q +LGH  L+ T+ YT   S  G + MM ++ +  P
Sbjct: 37  HTFRHTAAINYLRNGGDEFTLQIMLGHTTLAMTRRYT---STLGTEDMMRVHKKVSP 90


>gi|78358438|ref|YP_389887.1| phage integrase family site specific recombinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78220843|gb|ABB40192.1| site-specific recombinase, phage integrase family [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 407

 Score = 42.7 bits (99), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 29/39 (74%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           HTLRH+FA+ L++NG  L +++ +LGH  L+ T+ Y ++
Sbjct: 357 HTLRHTFASRLVANGTPLYNVKELLGHSSLAMTERYAHL 395


>gi|218263745|ref|ZP_03477746.1| hypothetical protein PRABACTJOHN_03436 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222535|gb|EEC95185.1| hypothetical protein PRABACTJOHN_03436 [Parabacteroides johnsonii
           DSM 18315]
          Length = 206

 Score = 42.7 bits (99), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 20/149 (13%)

Query: 160 LYLLYG-CGLRISEALSLTPQNI---MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYY 214
           LYL     GL  ++  +LT +NI    D+   + I + K   +  + LL   ++ I +Y 
Sbjct: 44  LYLFCAFTGLSFADMRNLTEENIHTYFDEHEWININRQKTGVVSNIRLLDIAKRIIDKYR 103

Query: 215 DLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            LC    N  I  +P +                IR + +  G+    T H  RH+ AT +
Sbjct: 104 GLCG---NGRIFPVPHYNTCLAG----------IRSVAKRCGITKHITWHQSRHTAATTV 150

Query: 274 -LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            LSNG  + ++ S+LGH  + TTQIY  +
Sbjct: 151 FLSNGVPIETVSSMLGHKSIKTTQIYAKI 179


>gi|212692014|ref|ZP_03300142.1| hypothetical protein BACDOR_01509 [Bacteroides dorei DSM 17855]
 gi|212665406|gb|EEB25978.1| hypothetical protein BACDOR_01509 [Bacteroides dorei DSM 17855]
          Length = 387

 Score = 42.7 bits (99), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 18/148 (12%)

Query: 163 LYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           L+ C   LRIS+ L+L  ++I+D          G  + I+      +K   E  D+ P  
Sbjct: 239 LFSCMTSLRISDILALCWEDIVD------YSAGGKCVHII-----TQKNKTE--DIIPIS 285

Query: 221 ---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
              L L       +G+  K L     Q  +++  R  G+  + T H+ R +F T   + G
Sbjct: 286 EEALGLIGYSSEKKGLVFKGLMRSWTQAPMKEWIRSAGITKNITFHSYRRTFTTLQGAAG 345

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            D+R+IQSI+ H  ++TT  Y  V   N
Sbjct: 346 TDVRTIQSIMAHKSITTTMRYMKVVDSN 373


>gi|326790035|ref|YP_004307856.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326540799|gb|ADZ82658.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 374

 Score = 42.7 bits (99), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 48/190 (25%)

Query: 139 DNVLLHTSHETKWIDAR----NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---- 190
           D +++    + K+I+A     N A+       GLR+ E ++L  +N+     T+ +    
Sbjct: 170 DIIIMTLDEQEKFIEAASTRDNKALFLTALFTGLRMGELIALKWENVDLKNGTINVCESY 229

Query: 191 --------QGKGDKI------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
                    G  + I            RIVP+ P+    IL+       ++  + +L +F
Sbjct: 230 KRVRAYTDNGDSEYIIDKKAPKTKNGNRIVPI-PTKLLPILK-------EIRTDNEL-VF 280

Query: 231 RGIRGKPLNPGVFQRYIRQLR-----RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
              +G+P+     +R  +++      RY+        H LRH++AT L+ NG D++++  
Sbjct: 281 CNAKGQPMTEITIRREQKRICEQAQIRYINF------HALRHTYATRLIENGIDVKTVSM 334

Query: 286 ILGHFRLSTT 295
           ++GH  + TT
Sbjct: 335 LVGHADIQTT 344


>gi|296164226|ref|ZP_06846819.1| probable phage integrase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295900417|gb|EFG79830.1| probable phage integrase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 390

 Score = 42.7 bits (99), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 74/356 (20%), Positives = 140/356 (39%), Gaps = 61/356 (17%)

Query: 1   MEGNNLPEIVSFELLKERQ--NWLQNLE-IERGLSKLTLQSYECDTRQFLIFLAFYTEEK 57
           ++G+ L  I+  EL+  R+  N+L+ L   +R  S  T++ Y     +   FL +  E+ 
Sbjct: 30  LDGSQLWVILDSELVMHREASNFLRTLHGADR--SPHTIRVY---AGRVAAFLGWCAEQG 84

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESN 112
           +   +I   +    + F++   T   G R     ++  +L+ +  FL++  +  +  ++ 
Sbjct: 85  VEWSSISLANLARFKHFLAV--TPHRGGRLRSGTTVNATLTAVCEFLRFCARTGVIEQAV 142

Query: 113 ILNMRNLKKSNSLPRALN--EKQALTLVDNVLLHTSHETKWIDA---------------- 154
              +   +     P   +  E     +V   +L    +  + +A                
Sbjct: 143 ADRLAEPRWLRFTPAGFDAGESGQFRMVRARMLKARAQATFPEALSAEQSQRVLACCRRP 202

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRI------------V 200
           R   I  L++  GLRI EAL L   ++  + D  TL     G  I I             
Sbjct: 203 RERFIATLMHESGLRIGEALGLRRGDLHLLPDSRTLGCAVLGAHIHIRHRANPNGALAKS 262

Query: 201 PLLPSV--RKAILEYYDLCPF---------DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           P   SV   +A+L  Y    F         D ++ + + L+    G P+     + +  +
Sbjct: 263 PFPRSVPTSQAVLSTYADYQFERSEILGEDDCDM-VFVNLYHQPLGAPMTYRAAKAFFER 321

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           L    G   +   H  RH+ AT+ +  G DL  +Q +LGH  L +T +Y +   ++
Sbjct: 322 LATECGF--AVRPHMFRHTAATNWVRAGVDLDVVQRLLGHAALGSTAVYLHARDED 375


>gi|295086881|emb|CBK68404.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 411

 Score = 42.7 bits (99), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 20/152 (13%)

Query: 160 LYLLYG-CGLRISEALSLTPQNI---MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYY 214
           LYL     GL  ++  +LT +NI    D+   + I + K   +  + LL   ++ I +Y 
Sbjct: 249 LYLFCAFTGLSFADMRNLTEENIHTYFDEHEWININRQKTGVVSNIRLLDIAKRIIDKYR 308

Query: 215 DLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            LC    N  I  +P +                IR + +  G+    T H  RH+ AT +
Sbjct: 309 GLCG---NGRIFPVPHYNTCLAG----------IRSVAKRCGITKHITWHQSRHTAATTV 355

Query: 274 -LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            LSNG  + ++ S+LGH  + TTQIY  +  +
Sbjct: 356 FLSNGVPIETVSSMLGHKSIKTTQIYAKITKE 387


>gi|200386479|ref|ZP_03213091.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199603577|gb|EDZ02122.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 235

 Score = 42.7 bits (99), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 74/193 (38%), Gaps = 46/193 (23%)

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC-----------------GL 168
           P  L   +  T+ +  +   +HE          I  LLY C                 G 
Sbjct: 52  PNPLENMRKFTIAEKEMAWLTHEQ---------IAELLYDCQHQNELLTLVVKICLSTGA 102

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
           R  EA++LT   +   + T   + KG K R +P    + K + E             ++ 
Sbjct: 103 RWREAVNLTRSQVTKYRITF-TRTKGKKNRSIP----ISKELYE-------------EIT 144

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
             +G   K  +   FQ      +  + LP     H LRH+FA H + +GG++ ++Q IL 
Sbjct: 145 ALKGF--KFFDDYYFQFASVMDKTSIILPRGQLTHVLRHTFAAHFMMSGGNILALQKILW 202

Query: 289 HFRLSTTQIYTNV 301
           H  +  T  Y ++
Sbjct: 203 HHDIKMTMRYAHL 215


>gi|229916806|ref|YP_002885452.1| integrase family protein [Exiguobacterium sp. AT1b]
 gi|229468235|gb|ACQ70007.1| integrase family protein [Exiguobacterium sp. AT1b]
          Length = 287

 Score = 42.7 bits (99), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 7/154 (4%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC 217
            L L    G+RI+E   LT   I  +   L I + K  K R VPL       +  Y +  
Sbjct: 133 FLTLQLHTGMRINEVRQLTLDAIDLNARLLYIHESKTGKPRKVPLNDVTHAMMTTYLE-- 190

Query: 218 PFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
             +    I  P +F   RG  +      R++++    + L  S T+HTLRH+F +HL   
Sbjct: 191 --EERRCIDSPYVFPSARGDLICKTTINRHLKRAAEDV-LGTSVTSHTLRHAFTSHLYDM 247

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           G    ++  +LGH    TT+ Y  V   +  D +
Sbjct: 248 GVKETTLSELLGHSEPKTTRRYIRVREDHLRDAV 281


>gi|94442246|dbj|BAE93622.1| integron integrase [uncultured bacterium]
          Length = 211

 Score = 42.7 bits (99), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 82/198 (41%), Gaps = 50/198 (25%)

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           N+   K+   LP  L++ +  TL+DN           +   N  I  L+YG G+R  E L
Sbjct: 26  NVVRAKRPKRLPVVLSQAEVCTLLDN-----------MSGINGLIARLIYGTGVRKMECL 74

Query: 175 SLTPQNI-MDDQSTLRIQGKGDKIRI--------VPL---LPSVR----KAILEYYDLCP 218
            L   ++  D +  +   GKG+K R+         PL   L +VR    K + E Y    
Sbjct: 75  RLRVTDVDFDYRQIIVRSGKGNKDRVTLLPECLCTPLREQLENVRQIHGKDLEEGYGEVG 134

Query: 219 FDLNLNIQLP----------LFRGIRGKPLNP--GVFQRY----------IRQLRRYLGL 256
               L+ + P          +F   R + ++P  GV +R+          IRQ      +
Sbjct: 135 LPFALDRKYPNAGREWKWQYVFPSTR-RSVDPLTGVIRRHHWYDTNVSRAIRQSVYNTRI 193

Query: 257 PLSTTAHTLRHSFATHLL 274
                 HTLRH+FATHLL
Sbjct: 194 NKQVGVHTLRHTFATHLL 211


>gi|331668111|ref|ZP_08368963.1| putative site-specific recombinase [Escherichia coli TA271]
 gi|331064625|gb|EGI36532.1| putative site-specific recombinase [Escherichia coli TA271]
          Length = 246

 Score = 42.7 bits (99), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 80/173 (46%), Gaps = 40/173 (23%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRI----------QGKGDKIRIV 200
           D R+  +   ++  G+RI EA +LTP++   D  +  +RI          +   D++R+V
Sbjct: 59  DQRHHMLFATMWNTGIRIGEARTLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLV 118

Query: 201 PL--LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL---NPGVFQRYIRQLRR--- 252
           PL  +  VR+  +E + +              R  R +PL        + +++Q  R   
Sbjct: 119 PLTDISYVRQ--MESWMIT------------TRPRRREPLWAVTDETMRNWLKQAVRRAE 164

Query: 253 ----YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               +  +P+  T HT RHS+  H+L +    + IQ+++GH    + ++YT V
Sbjct: 165 ADGVHFSIPV--TPHTFRHSYIMHMLYHRQPRKVIQALVGHRDPRSMEVYTRV 215


>gi|269123678|ref|YP_003306255.1| integrase family protein [Streptobacillus moniliformis DSM 12112]
 gi|268315004|gb|ACZ01378.1| integrase family protein [Streptobacillus moniliformis DSM 12112]
          Length = 353

 Score = 42.7 bits (99), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 120/275 (43%), Gaps = 43/275 (15%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           E E  +SK T + Y   TR F+ F   + ++      +R++ Y +I+  +SK+   K   
Sbjct: 84  EKEETVSKETFKRY---TRSFIDFNYLFDKQ------VREIKYDDIQKTLSKQVKAK--- 131

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRN------LKKSNSLPRALNEKQALTLVD 139
                SLS +  +        I  ES  L++ N      LK SN + + +      + + 
Sbjct: 132 -----SLSSLVVW------NWIFEESIKLDIINKNIATHLKASNKVTKTIERTIYSSEII 180

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK---GDK 196
           N +   + E  ++    + IL  L   GLRISE L +T +N+      L I GK     K
Sbjct: 181 NNIWKLTLENNFV----ADILICLLYSGLRISELLEITRENVHIKDRYL-IAGKKTLAGK 235

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF--RGIRGKPLNPGVFQRYIRQLRRYL 254
            R+VP+   +   I +Y  +   + +  I L  +   G  GK +N   F+ Y       L
Sbjct: 236 NRVVPIHKRIIPIIEKYLKISE-ETSSKILLGKYNQNGFYGK-INSASFRYYFYDFMEKL 293

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
            + ++   H+ RH+F + + S   +   ++ I+GH
Sbjct: 294 NIKMNI--HSTRHTFISKMKSLEVNDSKLKRIVGH 326


>gi|254885277|ref|ZP_05257987.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|294777930|ref|ZP_06743369.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|319643368|ref|ZP_07997994.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|254838070|gb|EET18379.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|294448219|gb|EFG16780.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|317384997|gb|EFV65950.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
          Length = 386

 Score = 42.7 bits (99), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 51/175 (29%)

Query: 152 IDARNSAILY----LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           +  RNS + +     L+ C  GLR S+ ++L  +NI      +++ GK     +  +  S
Sbjct: 223 LTGRNSCLEHTLDAFLFCCYTGLRYSDFVNLNEKNI------VKMDGK-----LWLIFDS 271

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA--- 262
           V+                 ++LPL     GK L   + Q+Y  +   +  +  +++    
Sbjct: 272 VKTGT-------------EVKLPLNLLFEGKALT--LLQKYQGKWSSFFSIKNNSSVNKE 316

Query: 263 ----------------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                           H+ RH+ AT L+  G ++ ++Q +LGH  L+TTQIY  V
Sbjct: 317 LIRIGKLAKISKHFSFHSARHTNATLLIYKGANITTVQKLLGHKNLATTQIYGEV 371


>gi|159904845|ref|YP_001548507.1| integrase family protein [Methanococcus maripaludis C6]
 gi|159886338|gb|ABX01275.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 182

 Score = 42.7 bits (99), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 18/167 (10%)

Query: 152 IDARNSAILY-LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKA 209
           +D++   + + +LYG  LR+SE L++  +NI  ++   ++   K +  +I  +   + + 
Sbjct: 22  VDSKEHKLFFKMLYGMALRVSELLTIEVKNINLNEGVCKLLDTKTETFQICVIPEWLNED 81

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           I  +  +   DL  N +L  F+       N       +++  +   +    + HT R S 
Sbjct: 82  I--FVHIIDNDLKDNDRLFKFK-------NRTYAWELVKKYTKDAKIHKEFSTHTFRRSR 132

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-------GGDW 309
           A HLL++G  L  +   L H  ++TT  Y  +   +        GDW
Sbjct: 133 ALHLLNDGVPLEKVSKYLRHKSINTTMHYLKITVDDIKKELAKIGDW 179


>gi|116687268|ref|YP_840514.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
 gi|116652983|gb|ABK13621.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
          Length = 618

 Score = 42.7 bits (99), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 24/42 (57%)

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           ST+ H  RH+  T +L+ G  L  +Q  LGH  L TT IY +
Sbjct: 552 STSPHAFRHTVGTQMLAAGVALEVVQRTLGHASLGTTSIYVS 593


>gi|317502290|ref|ZP_07960460.1| hypothetical protein HMPREF1026_02404 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316896308|gb|EFV18409.1| hypothetical protein HMPREF1026_02404 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 406

 Score = 42.7 bits (99), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 96/222 (43%), Gaps = 61/222 (27%)

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILY--------LLYGCGLRISEALSLTPQNI- 181
           EK+ALT+        S + K+++    + +Y        ++ G GLR  E + LT ++I 
Sbjct: 175 EKEALTV--------SQQEKFMEFVKQSNVYNTYYPMFTIMIGTGLRCGELIGLTWKDIN 226

Query: 182 -------MDDQSTLRIQGKGDK-----------IRIVPLLPSVRKAILEYYDLCPFDL-- 221
                  +D Q   +  G G K           IRI+P+   V KA  E   +  F L  
Sbjct: 227 IKAKTVNVDHQLIYKNLGDGCKFHISTPKTESGIRIIPMTQEVAKAFEEQRKI-NFMLAK 285

Query: 222 NLNIQLPLFRGI-----RGKPLNP-GV---------------FQRYIRQLRRYLGLPLST 260
           + +I++  + G       G+PL P GV                +R  ++ R+   LP   
Sbjct: 286 DKSIEVDGYSGFVFTAKSGRPLMPNGVNSVLYNIVDAYNKTEVERAKKEHRKAELLP-KF 344

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           +AH +RH+  T +     D++ +Q I+GH  +  T ++Y ++
Sbjct: 345 SAHVMRHTACTRMAECRMDVKVLQYIMGHAHIDVTMEVYNHI 386


>gi|309778436|ref|ZP_07673351.1| transposase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308913799|gb|EFP59624.1| transposase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 397

 Score = 42.7 bits (99), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 27/207 (13%)

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           N  + K S  L     EK ALT      L +  +T  +  +    + +L   GLRISE  
Sbjct: 171 NPFDFKLSEVLENDTKEKVALTEEQEQALLSFIKTDNVYHKYYDDVLILLKTGLRISELC 230

Query: 175 SLTPQNI-------MDDQSTLRIQGKGDKI---------RIVPL----LPSVRKAILEYY 214
            LT  +I       + D   L+ + +G  I         R VPL    + + ++ + +  
Sbjct: 231 GLTVADIDFKNEVVIIDHQLLKSKEQGYYIETPKTKSGTRQVPLSKETIQAFQRVMKKRP 290

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-YIRQLRRY----LGLPLS-TTAHTLRHS 268
              PF ++      LF   +GKP     +   ++R +++Y    +  PL   T HTLRH+
Sbjct: 291 KTDPFVIDGRGNF-LFVNPKGKPKVAIDYSTLFVRMVKKYNKHHMDNPLPHITPHTLRHT 349

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTT 295
           F T L S   + + +Q I+GH  +S T
Sbjct: 350 FCTRLASKNMNPKDLQYIMGHSNISIT 376


>gi|260593258|ref|ZP_05858716.1| integrase [Prevotella veroralis F0319]
 gi|260534815|gb|EEX17432.1| integrase [Prevotella veroralis F0319]
          Length = 409

 Score = 42.7 bits (99), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +Q  ++ LR   G+    T+HT RH+FAT + L  G  + ++  +LGH  +S T+ Y  V
Sbjct: 327 YQSCLKALRLRAGISFPFTSHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKV 386

Query: 302 N 302
            
Sbjct: 387 T 387


>gi|239906167|ref|YP_002952906.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239796031|dbj|BAH75020.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 348

 Score = 42.7 bits (99), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 93/225 (41%), Gaps = 29/225 (12%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKR-KITTESNILN---MRNLKKSNSLPRALNEKQALTLV 138
           +G    KRS      +L YLK   +   ++ ++    +R  KK    PR  + +  +T +
Sbjct: 121 VGKVYAKRSPVTRGRYLAYLKTVFQFGVDNELIEKNPLRRWKKPKERPR--DTRLTVTDL 178

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRI--SEALSLTPQNIMDDQSTLRIQGKGDK 196
           + +         W        + + +  G+R   SE L+L   ++  +  T+ +     K
Sbjct: 179 NKIKAAAEPHLAWA-------IEVAWNLGVRTGPSELLALKWSDVDWENQTVTVYATKTK 231

Query: 197 IR-IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R I+P+       + E  +          Q P     +G+P+      R +R   R  G
Sbjct: 232 TRRIIPISDEFLARLREVKEAA--------QSPFIVEYQGRPVKQ--ISRAMRTACRRAG 281

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +      + +RH FAT LL  GGDL ++ +++GH   S+ Q+  N
Sbjct: 282 ITYPVVLYDVRHLFATTLLREGGDLSAVSNLMGH---SSIQMTAN 323


>gi|194449272|ref|YP_002045468.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194407576|gb|ACF67795.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
          Length = 404

 Score = 42.7 bits (99), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 28/47 (59%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           G+    T H  RH+FA   L+ G D+ S+  +LGH  L TT+IY ++
Sbjct: 322 GITKHVTFHAGRHTFAVAQLNRGVDIYSLSRLLGHSELRTTEIYADI 368


>gi|307565760|ref|ZP_07628229.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345586|gb|EFN90954.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 431

 Score = 42.7 bits (99), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 15/158 (9%)

Query: 158 AILYLLYGC--GLRISEALSLT---PQNIMDDQSTLRIQGKGDKIR-IVPLLPSVRKAIL 211
           A L  ++ C  GL I++  +L     Q     +  +R + +  K+  +VPL P + +AI+
Sbjct: 238 ARLMFVFSCLTGLAIADMETLQYGHIQTAAGGRKYIRKERQKTKVEFVVPLHP-IAEAII 296

Query: 212 EYYDLCPFDLNLNIQLPLFRG-----IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            +   C  +   N +L   +      +  +  +  V  + +  + +  G+    + H  R
Sbjct: 297 RH---CWEEQEGNEELQTVKEKGDSLVFPRSCSRSVMGKNLCIVGKACGIRERLSYHMAR 353

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           H+F T  LS G  + SI  ++GH  +S+TQIY  V  +
Sbjct: 354 HTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDR 391


>gi|301308314|ref|ZP_07214268.1| integrase [Bacteroides sp. 20_3]
 gi|300833784|gb|EFK64400.1| integrase [Bacteroides sp. 20_3]
          Length = 409

 Score = 42.7 bits (99), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 116/242 (47%), Gaps = 28/242 (11%)

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           + +AF+++ +   I   +++  L+ +K   +   K+  + + +  +    ++S   PRAL
Sbjct: 169 DYQAFVTEEKGYAID--TVRHHLAILKKICRIAYKKGYSEKCHFQHFALPRQSERTPRAL 226

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNI-MDDQS 186
           + +++   + +V +  S+    I AR+      L+ C  G+  ++ +S+T +N+  DD  
Sbjct: 227 S-RESFERIRDVEI-PSYRKTHILARD----LFLFACYTGVSYADVVSITDENLYTDDNG 280

Query: 187 TLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           +L ++    K +    V LLP     +  Y D          +  LF  I     +P + 
Sbjct: 281 SLWLKYRRKKNEHRASVKLLPEALALLERYKD--------ETRETLFPIIH----HPNM- 327

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +R+++ L    G+  +   H  RHSFA+ + L  G  + +I  +LGH  +S+TQ+Y  V+
Sbjct: 328 KRHMKALAALAGIKDNLCYHQARHSFASLITLEAGVPIETISRMLGHSDISSTQVYARVS 387

Query: 303 SK 304
            K
Sbjct: 388 PK 389


>gi|300114520|ref|YP_003761095.1| integron integrase [Nitrosococcus watsonii C-113]
 gi|299540457|gb|ADJ28774.1| integron integrase [Nitrosococcus watsonii C-113]
          Length = 247

 Score = 42.7 bits (99), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 30/43 (69%), Gaps = 3/43 (6%)

Query: 162 LLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPL 202
           LLYG GLRISEA+ L  Q++  D  Q T+R  GKGDK RI PL
Sbjct: 147 LLYGSGLRISEAVRLRVQDLDYDYQQITVR-SGKGDKDRITPL 188


>gi|291539830|emb|CBL12941.1| Site-specific recombinase XerD [Roseburia intestinalis XB6B4]
          Length = 266

 Score = 42.7 bits (99), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 28/169 (16%)

Query: 158 AILY-LLYGCGLRISEALSLTPQNIMDDQSTLRI--------QG--------KGDKIRIV 200
           A LY LL   G+R+ EAL+L   ++  D   L +        QG          + IR +
Sbjct: 68  ANLYKLLLYTGMRVGEALALMICDVNWDNHVLHVTKNLQKTTQGVFYIETPKTRESIRDI 127

Query: 201 PLLPSVRKAILEYYDLCPF-------DLNLNIQLPLFRGIRGKPLNPGVFQ----RYIRQ 249
            L+P   +AI    +L          D+    +  LF   +GKP+N G  +    R + +
Sbjct: 128 YLVPEAEEAIKSQLELRKIIVEPIQEDIKGEFENLLFVNTKGKPVNVGSVRQSINRIVEK 187

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +R           H +RH + +  ++ G  L  +Q+ +GH  + TT  Y
Sbjct: 188 IRADGNNCPDIWIHAMRHGYVSIAVARGVPLEVVQANVGHTSIETTMRY 236


>gi|299148773|ref|ZP_07041835.1| integrase [Bacteroides sp. 3_1_23]
 gi|301311632|ref|ZP_07217558.1| integrase [Bacteroides sp. 20_3]
 gi|15072714|emb|CAC47921.1| integrase protein [Bacteroides thetaiotaomicron]
 gi|298513534|gb|EFI37421.1| integrase [Bacteroides sp. 3_1_23]
 gi|300830373|gb|EFK61017.1| integrase [Bacteroides sp. 20_3]
          Length = 411

 Score = 42.7 bits (99), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 18/151 (11%)

Query: 160 LYLLYG-CGLRISEALSLTPQNI---MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYY 214
           LYL     GL  S+  +LT +NI    D+   + I + K   +  + LL    + I +Y 
Sbjct: 249 LYLFCAFTGLSFSDMRNLTDENIRTYFDEHEWININRQKTGVVSNIRLLDIANRIIGKYR 308

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL- 273
            LC  D  +   +P +                IR + +  G+    T H  RH+ AT + 
Sbjct: 309 GLCG-DGRI-FPVPHYNTCLAG----------IRAVAKRCGITKHITWHQSRHTAATTVF 356

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           LSNG  + ++ S+LGH  + TTQIY  +  +
Sbjct: 357 LSNGVPIETVSSMLGHKSIKTTQIYAKITKE 387


>gi|154505395|ref|ZP_02042133.1| hypothetical protein RUMGNA_02917 [Ruminococcus gnavus ATCC 29149]
 gi|153794321|gb|EDN76741.1| hypothetical protein RUMGNA_02917 [Ruminococcus gnavus ATCC 29149]
          Length = 408

 Score = 42.7 bits (99), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           +AH LRH+F T L  N  +L+ IQSI+GH  ++TT
Sbjct: 349 SAHHLRHTFCTRLCENESNLKVIQSIMGHSDITTT 383


>gi|153933244|ref|YP_001385294.1| phage integrase family site specific recombinase [Clostridium
           botulinum A str. ATCC 19397]
 gi|152929288|gb|ABS34788.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 19397]
          Length = 387

 Score = 42.7 bits (99), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 22/133 (16%)

Query: 198 RIVPLLPSVRKAILEYYDL---------CPF-DLNLNIQLPLFRGIRGKPLN-PGVFQRY 246
           R+VP+   +  A+ E+  L         C + D NL     +F    GKP+    +F+ Y
Sbjct: 262 RVVPIPSKLINALEEHKALQEKEIKEAGCSYVDKNL-----VFATKLGKPIVVKNLFESY 316

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSK- 304
            R L R   +P     H LRH++AT L      L+++Q +LGH  +S T   YT+V  K 
Sbjct: 317 RRILIR-AKIP-HKKFHALRHTYATKLFEKDVQLKTVQKLLGHKNISITADTYTHVMPKE 374

Query: 305 --NGGDWMMEIYD 315
             +  D + +++D
Sbjct: 375 KISAADKLNDLFD 387


>gi|266625452|ref|ZP_06118387.1| integrase/recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
 gi|288862643|gb|EFC94941.1| integrase/recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
          Length = 282

 Score = 42.4 bits (98), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 11/148 (7%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           ++ +LY  G+RISE   +T + +   ++ + ++GK    R++    ++ K + E      
Sbjct: 125 LMMVLYSTGIRISELPYVTVEAVCQGKTEIYMKGK---CRLIIFPKNLIKKLKE------ 175

Query: 219 FDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSN 276
           F  N  I+   +FR   G+ L+       +++L     + P     H  RH FA    S 
Sbjct: 176 FIRNEKIKSGCIFRTRSGRDLDRSNICHSLKRLCEEARVDPSKVFPHNFRHLFAKTFYSI 235

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +L  +  ILGH  + TT+IY   +++
Sbjct: 236 EKNLAHLADILGHSSIETTRIYVAASTR 263


>gi|265750916|ref|ZP_06086979.1| transposase [Bacteroides sp. 3_1_33FAA]
 gi|263237812|gb|EEZ23262.1| transposase [Bacteroides sp. 3_1_33FAA]
          Length = 410

 Score = 42.4 bits (98), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 31/182 (17%)

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP---QNIMDDQ 185
           L +K+  TL+D ++ +T HE      R+  +  +    GL  S+  +LT    Q   D  
Sbjct: 224 LTQKEIQTLMDALMKNTYHEL----VRDLFVFSVF--TGLAYSDVKNLTADRLQTFFDGN 277

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNP 240
             +  + K         L  V K I+E Y     D C F +  N                
Sbjct: 278 LWIITRRKKTNTESNIRLLDVPKRIIEKYRGLTKDGCVFPVPSN---------------- 321

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYT 299
           G + + ++++ +  G  +  T H  RH+ AT  LLS+G  + ++  +LGH  + TT IY 
Sbjct: 322 GSYNKILKEIGKQCGFKVRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTPIYA 381

Query: 300 NV 301
            +
Sbjct: 382 KI 383


>gi|166031050|ref|ZP_02233879.1| hypothetical protein DORFOR_00731 [Dorea formicigenerans ATCC
           27755]
 gi|166029317|gb|EDR48074.1| hypothetical protein DORFOR_00731 [Dorea formicigenerans ATCC
           27755]
          Length = 329

 Score = 42.4 bits (98), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 8/153 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A++  LY   +R+SE  SL   +I      L + GKG K R V L       + EY 
Sbjct: 172 RDKAMMEFLYSTAVRVSELASLNRDDIRWSSKDLIVYGKGGKERTVYLNERTNMYLQEY- 230

Query: 215 DLCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                    +    LF G++     L+    +  IR+     G+      H  R +  T+
Sbjct: 231 ----LQSRTDNNPALFVGLKSPHNRLSKAGIEDMIRRTGERAGVE-KAHPHRFRGTSITN 285

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            ++ G  L+    + GH +  TT +Y +V+ ++
Sbjct: 286 AINRGMPLQEASIMAGHAKTETTMLYCSVDQES 318


>gi|331266363|ref|YP_004325993.1| integrase/recombinase, phage integrase family protein
           [Streptococcus oralis Uo5]
 gi|326683035|emb|CBZ00652.1| integrase/recombinase, phage integrase family protein
           [Streptococcus oralis Uo5]
          Length = 356

 Score = 42.4 bits (98), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 99/255 (38%), Gaps = 43/255 (16%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--------PRALNEK 132
           Q +   ++ R+LS + S  KYL +     +      RN+ K  S          RA N K
Sbjct: 99  QGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIK 158

Query: 133 QALTLVDNVLLHTSHETKWID-------------------ARNSAILYLLYGCGLRISEA 173
           Q L L D     T     +ID                    R+ AI+ LL   G+R+SEA
Sbjct: 159 QKLFLGD----ETEGFLTYIDQEYPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEA 214

Query: 174 LSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKAIL----EYYDLCPFDLNLNIQ 226
           ++L  +++   M      R  GK D + +     S  +  L    + Y     D  L   
Sbjct: 215 VNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKSYLENYLAIRNQRYKTEKTDTALF-- 272

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           L L+RG+  + ++    ++ + +        +  T H LRH+ AT L         +   
Sbjct: 273 LTLYRGVPNR-IDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQ 329

Query: 287 LGHFRLSTTQIYTNV 301
           LGH     T +YT++
Sbjct: 330 LGHASTQVTDLYTHI 344


>gi|323710246|gb|ADY03057.1| putative P2-like integrase [Escherichia coli]
          Length = 96

 Score = 42.4 bits (98), Expect = 0.087,   Method: Composition-based stats.
 Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 19/112 (16%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G    EA  L  +NI+ ++ T  ++ K +K R VP+  +V K I +           N +
Sbjct: 4   GASWGEAARLKAENIIHNRVTF-VKTKTNKPRTVPISEAVAKMIAD-----------NKR 51

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
             LF    G P     F+R ++ ++    LP     H LRHSFATH + NGG
Sbjct: 52  GFLFPDA-GYPR----FRRTMKAIKP--DLPTGQATHALRHSFATHFMINGG 96


>gi|313158018|gb|EFR57424.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 405

 Score = 42.4 bits (98), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 14/111 (12%)

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K D   +V LLP+    +  Y D   +  +    L                 R ++++  
Sbjct: 286 KTDTQYVVKLLPAALSILERYRDGTDYVFSFMPHL-------------NTVDRSLKRIAV 332

Query: 253 YLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             G+    T H  RH++AT + L NG  L ++  +LGH R++TTQ Y  V 
Sbjct: 333 LCGIEKKLTFHVARHTYATTICLMNGVSLETLSKMLGHKRITTTQTYAKVT 383


>gi|309812097|ref|ZP_07705857.1| site-specific recombinase, phage integrase family [Dermacoccus sp.
           Ellin185]
 gi|308433976|gb|EFP57848.1| site-specific recombinase, phage integrase family [Dermacoccus sp.
           Ellin185]
          Length = 398

 Score = 42.4 bits (98), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 4/107 (3%)

Query: 216 LCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           L P  ++LN Q  +FR  +G+ L N  V + +       +G+P   T H+LRH+ A+  +
Sbjct: 257 LEPLCVDLNDQAHIFRSPKGQILRNRSVRRGWFDAAAAKIGVP-DLTPHSLRHTAASIAI 315

Query: 275 SNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPS 320
           S+G     ++++LGH   S T   Y+++   + G    +  D+ H +
Sbjct: 316 SSGASALQVRNMLGHASASITLDTYSDLFDTDVGK-AADAIDRAHAA 361


>gi|256838396|ref|ZP_05543906.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256739315|gb|EEU52639.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 211

 Score = 42.4 bits (98), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 36/57 (63%), Gaps = 3/57 (5%)

Query: 243 FQRYIRQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           ++   + ++R++   G+    + H  RHSFA ++L+NG +++++ S+LGH  L  T+
Sbjct: 133 YESCCKSVKRWVKRSGIDKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTE 189


>gi|237713338|ref|ZP_04543819.1| tyrosine type site-specific recombinase [Bacteroides sp. D1]
 gi|317502920|ref|ZP_07961015.1| integrase [Prevotella salivae DSM 15606]
 gi|229446577|gb|EEO52368.1| tyrosine type site-specific recombinase [Bacteroides sp. D1]
 gi|315665954|gb|EFV05526.1| integrase [Prevotella salivae DSM 15606]
          Length = 437

 Score = 42.4 bits (98), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           IR + +  G+    T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY  +  +
Sbjct: 355 IRAVAKRCGITKHITWHQSRHTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYAKITKE 413


>gi|218265272|ref|ZP_03478751.1| hypothetical protein PRABACTJOHN_04461 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221530|gb|EEC94180.1| hypothetical protein PRABACTJOHN_04461 [Parabacteroides johnsonii
           DSM 18315]
          Length = 300

 Score = 42.4 bits (98), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 21/180 (11%)

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP---QNIMDDQ 185
           L +K+  TL+D  + +T HE      R+  +  +    GL  S+  +LT    Q   D  
Sbjct: 137 LTQKEIQTLMDAPMKNTYHEL----VRDLFVFSVF--TGLAYSDVKNLTADRLQTFFDGN 190

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             +  + K         L  V K I+E Y     D ++    P+       P N G   +
Sbjct: 191 LWIITRRKKTNTESNIRLLDVPKRIIEKYKGLARDGHV---FPV-------PSN-GSCNK 239

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            ++++ R  G  +  T H  RH+ AT  LLS+G  + ++  +LGH  + TTQIY  + ++
Sbjct: 240 ILKEIGRQCGFKVRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQ 299


>gi|159043537|ref|YP_001532331.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|157911297|gb|ABV92730.1| integrase family protein [Dinoroseobacter shibae DFL 12]
          Length = 370

 Score = 42.4 bits (98), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 63/147 (42%), Gaps = 14/147 (9%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYY 214
           A+  +LY  G R S+ + L PQ+I D   TL      D+  +   +P+LP + KA+L   
Sbjct: 204 ALALMLY-TGQRRSDIVRLGPQHIKDGWITLTQAKNRDRKPVTLSIPVLPEL-KAVL--- 258

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           D  P   NL   +  F    GKP     F  + R+     GL    +AH LR + A    
Sbjct: 259 DATPTG-NLAFLVTAF----GKPFTSNGFGNWFRKQCDEAGLK-HCSAHGLRKAGAALAA 312

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301
            NG   R + +I G   +     YT  
Sbjct: 313 ENGATERQLMAIFGWTTMKEASRYTRA 339


>gi|20090544|ref|NP_616619.1| phage integrase [Methanosarcina acetivorans C2A]
 gi|19915573|gb|AAM05099.1| phage integrase [Methanosarcina acetivorans C2A]
          Length = 373

 Score = 42.4 bits (98), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 96/195 (49%), Gaps = 27/195 (13%)

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K+N LP  +  K+ +      ++ T       + R+SAI+   Y  G R  E L++  +N
Sbjct: 107 KNNKLPEDIFTKEEV----EAMIDTCQ-----NPRDSAIVATFYESGARKGELLAVRIRN 157

Query: 181 IMDDQSTLRI---QGK--GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR- 234
           I+ D+  + +   +GK    +IR+V     +R    ++ D  P  L  N    +F  +R 
Sbjct: 158 IVFDEFGVVVNITEGKTGSRRIRLVFAASYLR----QWLDCHP--LKDNRDAFVFCSLRS 211

Query: 235 --GKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
             GK  N G+  + ++++ +  G+P+     H  RH+ ATHL  +  + + ++  +G  +
Sbjct: 212 PFGKLSNTGIHDQ-LKEIGKRAGIPVEKLHPHNFRHTRATHLSEHLTEAQ-LKEYMGWTK 269

Query: 292 LST-TQIYTNVNSKN 305
            ST T IYT+++ ++
Sbjct: 270 SSTMTSIYTHLSGRD 284


>gi|221195890|ref|ZP_03568942.1| phage family integrase [Atopobium rimae ATCC 49626]
 gi|221184237|gb|EEE16632.1| phage family integrase [Atopobium rimae ATCC 49626]
          Length = 310

 Score = 42.4 bits (98), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 18/150 (12%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY 213
           ++ L+   G+R SEAL++TP++    +  L I    D       +      S RK  +++
Sbjct: 141 LILLIAKTGIRFSEALAVTPRDFDFTRQVLSIDKTWDYKNGGGFVATKNRSSNRKVQIDW 200

Query: 214 YDLCPFDL---NLNIQLPLF----RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
             +  F      LN   PLF    R +    +N  + +R I       G+P+  + H LR
Sbjct: 201 QLIVQFSTLVRGLNEDDPLFVCEKRRVYNSTINSVLERRCIDA-----GIPI-ISVHGLR 254

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           H+ A+ LL  G  + S+   LGH  ++TT+
Sbjct: 255 HTHASLLLFAGVSIASVAKRLGHASMNTTE 284


>gi|91202076|emb|CAJ75136.1| similar to site-specific tyrosine recombinase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 351

 Score = 42.4 bits (98), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 84/207 (40%), Gaps = 36/207 (17%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K++N   R L++ +   L++N         +W+    S I+      GLR  E LSLT  
Sbjct: 155 KEANERDRWLSDDEEKRLLEN-------SPEWL----SDIIVFDLHTGLRQDELLSLTWD 203

Query: 180 NIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
            +   +  + IQ  K  K R +PL                  L++ ++    R ++G  +
Sbjct: 204 RVDLFRKVIIIQESKNGKPRTIPL--------------NQISLDILMEKTKVRSLKGDFV 249

Query: 239 NPGVFQRYI--RQLRRYLGLPLSTTA------HTLRHSFATHLLSNGGDLRSIQSILGHF 290
            P      +  R L R   +     +      H +RH FAT L   G D+  I  +LGH 
Sbjct: 250 FPSSVMTKMNRRNLVRAFDIAKEKASIQNFHFHDVRHCFATRLAQRGVDIYRISKLLGHL 309

Query: 291 RLSTTQIYTN--VNSKNGGDWMMEIYD 315
            ++ TQ Y +    S  GG  ++E  D
Sbjct: 310 NITMTQRYAHHCPESLRGGIEVLEKVD 336


>gi|24379471|ref|NP_721426.1| putative transposon integrase; Tn916 ORF3-like [Streptococcus
           mutans UA159]
 gi|24377408|gb|AAN58732.1|AE014942_8 putative transposon integrase; Tn916 ORF3-like [Streptococcus
           mutans UA159]
          Length = 388

 Score = 42.4 bits (98), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 8/85 (9%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQL-RRY-----LGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
           LF   +G P   G F R +R L ++Y       LP   T HTLRH+F T+  + G + ++
Sbjct: 303 LFLNRKGYPKTSGDFDRILRNLIKKYNKYHEEKLP-HITPHTLRHTFCTNCANAGMNPKA 361

Query: 283 IQSILGHFRLSTT-QIYTNVNSKNG 306
           +Q I+GH  ++ T   Y +   K G
Sbjct: 362 LQYIMGHANITMTLNYYAHATYKFG 386


>gi|21219517|ref|NP_625296.1| integrase [Streptomyces coelicolor A3(2)]
 gi|11071209|emb|CAC14368.1| integrase [Streptomyces coelicolor A3(2)]
          Length = 370

 Score = 42.4 bits (98), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 25/153 (16%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQ---------------STLRIQGKGDKIRIVPLLP 204
           + ++ GCGLR  EA ++   N++ D                + L+ +  G+  R VPL  
Sbjct: 199 IVMMVGCGLRNGEARAVNVNNVVADDVYRVHEQIHSNTHRPAKLKHRRAGE-FREVPLPR 257

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL--STTA 262
           SVR+A+  Y +          +  L RG  G    P + +R +++L  + GLP       
Sbjct: 258 SVREAMERYEE----KHGTTKEGYLLRGPSGYYTEP-MERRRVQKL--FKGLPAEDGVGM 310

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           +  RH FA++ L NG  +  +   +GH  +  T
Sbjct: 311 YGFRHYFASNALGNGIPITDVAEWMGHKSIEET 343


>gi|331083037|ref|ZP_08332156.1| hypothetical protein HMPREF0992_01080 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330399774|gb|EGG79435.1| hypothetical protein HMPREF0992_01080 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 281

 Score = 42.4 bits (98), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           HTLRH+FAT    N  + + +QS+LGH  +S T  IYT+V
Sbjct: 204 HTLRHTFATRCFENKMEPKVVQSLLGHSSISITLNIYTHV 243


>gi|319937111|ref|ZP_08011518.1| hypothetical protein HMPREF9488_02353 [Coprobacillus sp. 29_1]
 gi|319807477|gb|EFW04070.1| hypothetical protein HMPREF9488_02353 [Coprobacillus sp. 29_1]
          Length = 355

 Score = 42.4 bits (98), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 19/169 (11%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-------QGKGDKIRIVPLLPS 205
           +  +  I  +L+  G+R  E LSL    +   Q  ++I       +GKG  I     + S
Sbjct: 126 NTTDKVIFNMLFFLGIRKGELLSLRWNEVSFAQKNIKIISTANREKGKGQVITPPKTVHS 185

Query: 206 VRKAILEYYDLCPFDLNLNI-QLPLF-RGIRGKPLNPG----VFQRYIRQLRRYLG---L 256
            R  +++ + LC       I Q  ++ + I+ K +  G     F    R L++YL    L
Sbjct: 186 NRIVVMDKF-LCELIEEYYIGQRKIYGKDIKQKFVIGGDKMMSFTSLQRLLKKYLAKTQL 244

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
           P   T H  RHS AT L     D+++I   LGH  +  T + Y + NSK
Sbjct: 245 P-EITLHGFRHSHATMLADFSTDIKAISERLGHENIEITLKTYIHTNSK 292


>gi|255012146|ref|ZP_05284272.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           3_1_12]
          Length = 400

 Score = 42.4 bits (98), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           IR + +  G+    T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY  +  +
Sbjct: 318 IRAVAKRCGITKHITWHQSRHTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYAKITKE 376


>gi|269126622|ref|YP_003299992.1| integrase family protein [Thermomonospora curvata DSM 43183]
 gi|268311580|gb|ACY97954.1| integrase family protein [Thermomonospora curvata DSM 43183]
          Length = 345

 Score = 42.4 bits (98), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 12/147 (8%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R++A+L +LY  G R SE  +L  ++    + +LRI GKGDK R+  + P   + +  + 
Sbjct: 177 RDAALLAVLYTTGARRSEISTLRREHYDPGERSLRIIGKGDKERLEYVHPQAAQLLGAW- 235

Query: 215 DLCPFDLNLNIQLPLFR------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
                 L      PLF        I+ + ++    +  + + RR   LP   T H  R +
Sbjct: 236 ----LALQDRPTGPLFTPVHRSGAIQQRAMSDAAVRNVVVKRRRQANLP-PMTPHDFRRT 290

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTT 295
           F  +LL  G DL + Q ++GH   +TT
Sbjct: 291 FIGNLLDAGVDLVTAQQLVGHASPATT 317


>gi|168179463|ref|ZP_02614127.1| phage integrase [Clostridium botulinum NCTC 2916]
 gi|182669587|gb|EDT81563.1| phage integrase [Clostridium botulinum NCTC 2916]
          Length = 387

 Score = 42.4 bits (98), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSK 304
           H+LRH++AT L   G  L+++Q +LGH  +S T  IYT+V  K
Sbjct: 331 HSLRHTYATKLFEKGVQLKTVQKLLGHKDISITADIYTHVMPK 373


>gi|313609398|gb|EFR85005.1| phage integrase [Listeria monocytogenes FSL F2-208]
          Length = 359

 Score = 42.4 bits (98), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 33/159 (20%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTL-------RIQG----------KGDKIRIVP--L 202
           +LY CG+R+ E L+LTP +   ++ T+       RI+G          KG +I  +P  L
Sbjct: 196 ILYWCGIRVGELLALTPSDFNFEEGTVSITKSYQRIKGEDIITTPKTEKGKRIINMPDFL 255

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           +  ++  I   Y   P     +   P+ + +    +  G  ++ I+++R           
Sbjct: 256 VDEMQDYISRLYGCKP----KSRIFPITKAVLYSEMKRGATEQNIKKIR----------I 301

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H LRHS  + L+  G    +I   +GH  +  T  Y ++
Sbjct: 302 HDLRHSHVSLLIDMGFSAVAIADRVGHESIDITYHYAHL 340


>gi|299141452|ref|ZP_07034589.1| integrase [Prevotella oris C735]
 gi|304382985|ref|ZP_07365466.1| integrase [Prevotella marshii DSM 16973]
 gi|298577412|gb|EFI49281.1| integrase [Prevotella oris C735]
 gi|304335904|gb|EFM02153.1| integrase [Prevotella marshii DSM 16973]
          Length = 407

 Score = 42.4 bits (98), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 32/58 (55%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           ++++    G+    + H  RH FAT  LS G  + S+  +LGH  + TTQ+Y  + ++
Sbjct: 327 LKKVMSECGITKDISFHCARHGFATLALSKGMPIESVSRVLGHTNIVTTQLYAKITTE 384


>gi|187932650|ref|YP_001885119.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium botulinum B str. Eklund 17B]
 gi|187720803|gb|ACD22024.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium botulinum B str. Eklund 17B]
          Length = 386

 Score = 42.4 bits (98), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +F    G+ + P  F + +++L +Y  +  +   H LRHS AT LL N   ++ IQ  LG
Sbjct: 293 IFTWENGRYIIPSNFLQRLKRLCKYCKIEKNIRWHDLRHSNATILLKNKISMKVIQERLG 352

Query: 289 HFRLSTT-QIYTNV 301
           H  + TT  IY +V
Sbjct: 353 HSLMQTTSDIYAHV 366


>gi|327470042|gb|EGF15506.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK330]
          Length = 356

 Score = 42.4 bits (98), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 118/301 (39%), Gaps = 60/301 (19%)

Query: 57  KITIQTIRQLSYTEIRAFISKRR---------TQK-IGDRSLKRSLSGIKSFLKYLKKRK 106
           +I +  +  +S  ++ AFI   R         TQ  +   ++ R+LS + S  KYL +  
Sbjct: 65  EIPLSVLENMSKKDMEAFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLYKYLTEEV 124

Query: 107 ITTESNILNMRNLKKSNSL--------PRALNEKQALTLVDNV---LLHTSHE------T 149
              +      RN+ K  S          RA N KQ L L D     LL+   E       
Sbjct: 125 ENEQGEPYFYRNVMKKVSTKKKKETLAARAENIKQKLFLGDETEEFLLYIDREYPKKLSN 184

Query: 150 KWIDA------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
           + + +      R+ AI+ LL   G+R+SEA++L  ++I      + +  KG K   V + 
Sbjct: 185 RALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLKDINLKMMVIEVTRKGGKRDSVNVA 244

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRG-----------IRGKP--LNPGVFQRYIRQL 250
              +  + EY         L+I++  ++             RG P  ++    ++ + + 
Sbjct: 245 AFAKPYLEEY---------LSIRIKRYKAEKTDTAFFLTEYRGTPNRIDASSVEKMVAKY 295

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGG 307
                  +  T H LRH+ AT L         +   LGH     T +YT++     KN  
Sbjct: 296 SE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNAL 353

Query: 308 D 308
           D
Sbjct: 354 D 354


>gi|292669090|ref|ZP_06602516.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292649253|gb|EFF67225.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 392

 Score = 42.4 bits (98), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 113/275 (41%), Gaps = 21/275 (7%)

Query: 42  DTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY 101
           DT +  I L  +   +  +  +  +   +IR ++ + RT+     +L    + I++F K 
Sbjct: 99  DTYELAIRLFLHWCMEQNLHPLSDVHDYQIRIYMEEMRTRGYSAATLMIKGAAIRAFYKV 158

Query: 102 LKKRKITTESNI--LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA----R 155
            ++     E+    L +RN       P+ L+E      VD +           +A    R
Sbjct: 159 AQRLSFIAENPCADLQLRN-------PQHLDEDYKYLTVDQIKEICEGLAADQNALRRLR 211

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR--KAILEY 213
           N  I+YL+   GLR+ E + L+ ++I   +  + I+GKG    I P   + +  KA +E 
Sbjct: 212 NLLIVYLMGVEGLRVVEVMRLSDEDIDWQRGRIEIRGKGHAGIIYPCEETFQLLKAYIEE 271

Query: 214 YDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRY-IRQLRRYLGLPLSTTA-HTLRHSF 269
               P +  L   +        +G+    G+  RY I +     GL     A H  RHS 
Sbjct: 272 RGPVPPENRLTPTVISCARNNAQGRITRVGI--RYVINKALTDAGLKQPGYACHLFRHSC 329

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            T+L     DLR +Q  L       T  Y +V+ +
Sbjct: 330 GTNLYQETKDLRVVQETLRQRSPKVTAKYAHVHDR 364


>gi|228987487|ref|ZP_04147606.1| Phage integrase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228772219|gb|EEM20666.1| Phage integrase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 398

 Score = 42.4 bits (98), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 78/193 (40%), Gaps = 34/193 (17%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT-PQNIMDDQSTLRIQ--------- 191
           LL+T+H+ K I      ++Y L   G+R  EA +L    NI  D   + I          
Sbjct: 191 LLNTAHKDKMI---YYVLIYTLVETGMRKGEATALEWDTNIDLDNKMIHIDRTINYHAYT 247

Query: 192 -----------GKG---DKIRIVPL---LPSVRKAILEYYDLCPFDLN--LNIQLPLFRG 232
                      GK    D +R + +   L SV K    Y + C   L    +        
Sbjct: 248 PIGQKNSKDLIGKTKTYDSVRSITISDRLVSVLKTFKTYQNECKLKLGARYDKTFDFVFT 307

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
             GKP+     +  + ++ +   LP     H LRH+ A  LL  G +++ IQ  LGH  +
Sbjct: 308 TTGKPIPKSTLKNVLDRILKNAELP-QIGVHGLRHTHAVLLLEAGVEMKYIQERLGHKSI 366

Query: 293 S-TTQIYTNVNSK 304
             T+ IY++V  K
Sbjct: 367 EITSNIYSHVTPK 379


>gi|212694398|ref|ZP_03302526.1| hypothetical protein BACDOR_03925 [Bacteroides dorei DSM 17855]
 gi|212662899|gb|EEB23473.1| hypothetical protein BACDOR_03925 [Bacteroides dorei DSM 17855]
          Length = 232

 Score = 42.4 bits (98), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 31/182 (17%)

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP---QNIMDDQ 185
           L +K+  TL+D ++ +T HE      R+  +  +    GL  S+  +LT    Q   D  
Sbjct: 46  LTQKEIQTLMDALMKNTYHEL----VRDLFVFSVF--TGLAYSDVKNLTADRLQTFFDGN 99

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNP 240
             +  + K         L  V K I+E Y     D C F +  N                
Sbjct: 100 LWIITRRKKTNTESNIRLLDVPKRIIEKYRGLTKDGCVFPVPSN---------------- 143

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYT 299
           G + + ++++ R  G  +  T H  RH+ AT  LLS+G  + ++  +LGH  + TT IY 
Sbjct: 144 GSYNKTLKEIGRQCGFKVRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTPIYA 203

Query: 300 NV 301
            +
Sbjct: 204 KI 205


>gi|154484436|ref|ZP_02026884.1| hypothetical protein EUBVEN_02149 [Eubacterium ventriosum ATCC
           27560]
 gi|149734913|gb|EDM50830.1| hypothetical protein EUBVEN_02149 [Eubacterium ventriosum ATCC
           27560]
          Length = 426

 Score = 42.4 bits (98), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           +Q R  + LP   T H LRH+FAT L  +  +L++IQ I+GH  + TT
Sbjct: 354 KQKREPIILP-HFTCHQLRHTFATRLCESTSNLKAIQDIMGHANIETT 400


>gi|330502011|ref|YP_004378880.1| integrase [Pseudomonas mendocina NK-01]
 gi|328916297|gb|AEB57128.1| integrase [Pseudomonas mendocina NK-01]
          Length = 330

 Score = 42.4 bits (98), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 27/40 (67%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           H LRH+FA+H +  GGD+  +Q ILGH  ++ T  Y +++
Sbjct: 269 HILRHTFASHYMMGGGDILGLQRILGHSTITMTMRYAHLS 308


>gi|169628905|ref|YP_001702554.1| Phage integrase [Mycobacterium abscessus ATCC 19977]
 gi|169240872|emb|CAM61900.1| Phage integrase [Mycobacterium abscessus]
          Length = 389

 Score = 42.4 bits (98), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 64/154 (41%), Gaps = 22/154 (14%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK-----------------GDKIRIVPL 202
           L +L   GLR SE L+L   +   +  TL + GK                    +R V L
Sbjct: 217 LIILMATGLRRSELLALRWSDFDANAGTLTVTGKLVRATGAGLQRIDEAKTAAGMRTVAL 276

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            PS     L +     +   +  QL +F    G   +P  F +  R +R  LG+P  TT 
Sbjct: 277 -PSFAVTALRHRQGRDY---VGQQLMIFPSTAGTWRDPNNFGKQWRAVRDDLGVPGVTT- 331

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           H+ R + AT +  NG   R     LGH ++S TQ
Sbjct: 332 HSFRKTMATLIDDNGLSARVGADQLGHAKVSMTQ 365


>gi|159904528|ref|YP_001548190.1| integrase family protein [Methanococcus maripaludis C6]
 gi|159886021|gb|ABX00958.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 322

 Score = 42.4 bits (98), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 60/301 (19%), Positives = 125/301 (41%), Gaps = 17/301 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-KITIQTIRQLSYTEIRAFISKR 78
           +W+     ER    +  ++ E D  +  I+L F  E  +    ++    + +   ++ K 
Sbjct: 25  SWVSKFVEEREFDGIKPRTIENDVSRLKIYLDFINERLQKDADSVENHDFIKFFNYLDKE 84

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  ++   +  R  + +K F K +K       E   L+ +   +         +   L L
Sbjct: 85  R--RLSKNTQNRYFNLLKVFYKIMKLNNFKDFEEESLDRKRFSRFEVKHYDAIDLDTLNL 142

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +   ++ ++  +K    R+  I+ LL+  G R+SE L+L  ++   ++ + +++    K+
Sbjct: 143 ILTGVVKSTGRSK---VRDGIIIRLLWDTGCRLSEILNLRYKDCDFEEGSFKLRNTKGKV 199

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN----PGVFQRYIRQLRR- 252
             V +  +    IL  Y     ++    +  +F+   G  +       VF + I++L+  
Sbjct: 200 ERVVVCTNETLNILTQY--IKHNVYQGHEDRIFQSTTGGKVERSHMSKVFAKQIKKLQDQ 257

Query: 253 -YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             +        H+LRH  A  LL  G  +  ++  LGH  L TT  Y   +S+   D M+
Sbjct: 258 GLISPNRRLVIHSLRHGRAVDLLEKGMPIDIVKEYLGHASLETTLFYA--HSRERKDKML 315

Query: 312 E 312
           +
Sbjct: 316 K 316


>gi|150005005|ref|YP_001299749.1| putative transposase [Bacteroides vulgatus ATCC 8482]
 gi|294776367|ref|ZP_06741846.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|149933429|gb|ABR40127.1| putative transposase [Bacteroides vulgatus ATCC 8482]
 gi|294449783|gb|EFG18304.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 412

 Score = 42.4 bits (98), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 14/111 (12%)

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPLL  + K ILE Y      L     LP+   I  + LN      Y++++    G+  +
Sbjct: 293 VPLL-DIPKMILEKY---KGKLPNGKVLPI---ISNQKLNA-----YLKEIADVCGIKKN 340

Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGD 308
            T H  RH+FAT   L+ G  + ++  +LGH  + TTQIY  + N+K   D
Sbjct: 341 LTFHLARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNNKISND 391


>gi|116254951|ref|YP_770786.1| putative integrase/recombinase [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115259599|emb|CAK11569.1| putative integrase/recombinase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 295

 Score = 42.4 bits (98), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 68/150 (45%), Gaps = 16/150 (10%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           LL   G+RISEAL+L  +++  D   +R Q K  K R++PL  + R A L+ Y L    L
Sbjct: 125 LLATTGMRISEALALRLEDVTADGLVIR-QTKFQKSRLLPLHDTTRDA-LDKYLLARRRL 182

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL---PLSTTA--HTLRHSFATHLLSN 276
                +     +   P    V   ++R L R LGL   P  T    H LRH+FA   L  
Sbjct: 183 GTLNSMLFVSAMGAPPAYSTVIAVFLR-LARSLGLRGEPGQTGPRIHDLRHTFAVRSLEQ 241

Query: 277 --------GGDLRSIQSILGHFRLSTTQIY 298
                   G  + ++ + LGH  ++ T  Y
Sbjct: 242 CQPDHHAVGRHIVALSTYLGHAHVTDTYWY 271


>gi|313149988|ref|ZP_07812181.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313138755|gb|EFR56115.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 396

 Score = 42.4 bits (98), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           IR + +  G+    T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY  +  +
Sbjct: 314 IRAVAKRCGITKHITWHQSRHTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYAKITKE 372


>gi|306826811|ref|ZP_07460113.1| phage integrase family prophage LambdaSa2 [Streptococcus pyogenes
           ATCC 10782]
 gi|304431100|gb|EFM34107.1| phage integrase family prophage LambdaSa2 [Streptococcus pyogenes
           ATCC 10782]
          Length = 359

 Score = 42.4 bits (98), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEYYD 215
           Y++   GLR +E   LT ++I  D   + I    D        P     S+RK       
Sbjct: 194 YIIAVTGLRFAEVQGLTWKDIDFDNGYIDINKTFDYSISQNFGPTKNEQSIRK------- 246

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI---------RQLRRYLGLPLSTTAHTLR 266
             P D N    L L R  +          R           + ++R  G  L  T H+LR
Sbjct: 247 -VPIDKN---SLELLRNFKSDYYQDNKLGRVCFGASNNATNKVIKRVTGRNL--TNHSLR 300

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           H++A++L++ G DL S+  +LGH  L+ T
Sbjct: 301 HTYASYLIAQGVDLISVSKLLGHENLNIT 329


>gi|253572770|ref|ZP_04850170.1| int [Bacteroides sp. 1_1_6]
 gi|251837670|gb|EES65761.1| int [Bacteroides sp. 1_1_6]
          Length = 411

 Score = 42.4 bits (98), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           IR + +  G+    T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY  +
Sbjct: 329 IRAVAKRCGITKHITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKI 384


>gi|313889180|ref|ZP_07822834.1| site-specific recombinase, phage integrase family [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312844734|gb|EFR32141.1| site-specific recombinase, phage integrase family [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 299

 Score = 42.4 bits (98), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 86/187 (45%), Gaps = 24/187 (12%)

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           PR  + +    L+D +   T     +   R+   + L+   G+R +EA  L   +++ ++
Sbjct: 115 PRPCDTEDLKKLLDVIDTDT-----YAGLRDYTAILLIVDTGIRPAEAFRLIDTDVIFEK 169

Query: 186 STLRIQ---GKGDKIRIVPLLPSVR---KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           + + I+    K  + R++P+   V    +A+L+Y          N    +F  I G   +
Sbjct: 170 NIINIRKEVAKTSQARVLPVSVKVMIYVRALLKY----------NKSEYVFATINGDQFS 219

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT-HLLSNGGDLRSIQSILGHFRLSTTQIY 298
              F+  +++   Y  + +  T + LRH F T +  S+  ++  +Q ILGH +L  T+ Y
Sbjct: 220 TDRFRTRLKKYCWYADVHI--TPYQLRHYFGTEYARSDNCNILYLQKILGHSKLEMTRRY 277

Query: 299 TNVNSKN 305
             + +++
Sbjct: 278 VKIETED 284


>gi|303235575|ref|ZP_07322182.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302484022|gb|EFL47010.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 481

 Score = 42.4 bits (98), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           IR + +  G+    T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY  +
Sbjct: 399 IRAVAKRCGITKHITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKI 454


>gi|294663047|ref|YP_003566017.1| site-specific recombinase, phage integrase family [Bacillus
           megaterium QM B1551]
 gi|294352012|gb|ADE72337.1| site-specific recombinase, phage integrase family [Bacillus
           megaterium QM B1551]
          Length = 382

 Score = 42.4 bits (98), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 63/155 (40%), Gaps = 12/155 (7%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDD----QSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           N  +L +L   GLR+ E  + +  ++  D       LR  GKG K     L PS+ + IL
Sbjct: 208 NHGLLTMLAMTGLRVQEIANASWGDVYLDSLSGHYRLRGVGKGGKKFDKLLHPSLYERIL 267

Query: 212 EYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAH 263
            +         LN + Q PLF    G   +      YI ++     LP         T H
Sbjct: 268 AFRARRHVSTALNTSDQGPLFPSKDGGYYHYKNLSNYIVRIIERTELPFVKERADRITPH 327

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             RH +A +    G D+  IQ  LGH    TT+ Y
Sbjct: 328 YFRHFYAIYSRQQGADIFLIQKELGHSDRKTTERY 362


>gi|53711443|ref|YP_097435.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|154490858|ref|ZP_02030799.1| hypothetical protein PARMER_00775 [Parabacteroides merdae ATCC
           43184]
 gi|167762758|ref|ZP_02434885.1| hypothetical protein BACSTE_01116 [Bacteroides stercoris ATCC
           43183]
 gi|189461170|ref|ZP_03009955.1| hypothetical protein BACCOP_01817 [Bacteroides coprocola DSM 17136]
 gi|189464486|ref|ZP_03013271.1| hypothetical protein BACINT_00828 [Bacteroides intestinalis DSM
           17393]
 gi|212695418|ref|ZP_03303546.1| hypothetical protein BACDOR_04967 [Bacteroides dorei DSM 17855]
 gi|218131431|ref|ZP_03460235.1| hypothetical protein BACEGG_03049 [Bacteroides eggerthii DSM 20697]
 gi|237707983|ref|ZP_04538464.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|237718310|ref|ZP_04548791.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|262406714|ref|ZP_06083263.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294644489|ref|ZP_06722249.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294808560|ref|ZP_06767306.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298377021|ref|ZP_06986975.1| integrase [Bacteroides sp. 3_1_19]
 gi|298483541|ref|ZP_07001717.1| integrase [Bacteroides sp. D22]
 gi|301308604|ref|ZP_07214557.1| integrase [Bacteroides sp. 20_3]
 gi|319644409|ref|ZP_07998863.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|329960021|ref|ZP_08298517.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|46242813|gb|AAS83518.1| Int [Bacteroides fragilis]
 gi|52214308|dbj|BAD46901.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|154088606|gb|EDN87650.1| hypothetical protein PARMER_00775 [Parabacteroides merdae ATCC
           43184]
 gi|167699098|gb|EDS15677.1| hypothetical protein BACSTE_01116 [Bacteroides stercoris ATCC
           43183]
 gi|189432084|gb|EDV01069.1| hypothetical protein BACCOP_01817 [Bacteroides coprocola DSM 17136]
 gi|189438276|gb|EDV07261.1| hypothetical protein BACINT_00828 [Bacteroides intestinalis DSM
           17393]
 gi|212662053|gb|EEB22627.1| hypothetical protein BACDOR_04967 [Bacteroides dorei DSM 17855]
 gi|217986363|gb|EEC52700.1| hypothetical protein BACEGG_03049 [Bacteroides eggerthii DSM 20697]
 gi|229452494|gb|EEO58285.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229457969|gb|EEO63690.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|262355417|gb|EEZ04508.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292640180|gb|EFF58438.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294444241|gb|EFG12962.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298266005|gb|EFI07664.1| integrase [Bacteroides sp. 3_1_19]
 gi|298270298|gb|EFI11883.1| integrase [Bacteroides sp. D22]
 gi|300833398|gb|EFK64015.1| integrase [Bacteroides sp. 20_3]
 gi|313158580|gb|EFR57974.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
 gi|317384129|gb|EFV65104.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|328533155|gb|EGF59924.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 411

 Score = 42.4 bits (98), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           IR + +  G+    T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY  +  +
Sbjct: 329 IRAVAKRCGITKHITWHQSRHTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYAKITKE 387


>gi|307544254|ref|YP_003896733.1| site-specific recombinase, phage integrase family [Halomonas
           elongata DSM 2581]
 gi|307216278|emb|CBV41548.1| site-specific recombinase, phage integrase family [Halomonas
           elongata DSM 2581]
          Length = 451

 Score = 42.4 bits (98), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 2/89 (2%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           I GK ++    Q+    +R   GLP     +TLRH+FA+ L+ +G DL ++  ++ H  +
Sbjct: 349 ITGKRMSATAMQKPWAAVRGLGGLPEDRQLYTLRHNFASQLVMSGTDLLTVSKLMAHADI 408

Query: 293 STT-QIYTNVNSKNGGDWMMEIYDQTHPS 320
            TT   Y ++   +  D  +E++ Q  P 
Sbjct: 409 QTTIAHYAHLAPDHKRD-AVEVFAQLAPG 436


>gi|295699756|ref|YP_003607649.1| integrase family protein [Burkholderia sp. CCGE1002]
 gi|295438969|gb|ADG18138.1| integrase family protein [Burkholderia sp. CCGE1002]
          Length = 584

 Score = 42.4 bits (98), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 67/163 (41%), Gaps = 23/163 (14%)

Query: 159 ILYLLYGCGLRISEALSLTPQNI-MDDQST--LRIQGKGDKIRIVPLLPSVRKAILEYY- 214
           +L  LY  GLR  E +  T ++I +DD+    LR+ GKG +   V L P    A+  Y  
Sbjct: 399 LLDFLYATGLRAQELVGATLRDIQIDDRDEWWLRVTGKGARAGSVALPPLALDALERYLA 458

Query: 215 --DLCPFDLNLNIQLPLFR--GIRGKPLNPGVFQRYIRQLRRYLGLPLS----------- 259
              L       +   P+    G      NP    R  + L  + GL              
Sbjct: 459 QRGLPVTRRRWDPAAPVVASLGPEVHSNNPVSATRLRQVLDAFFGLAAGVFLDENPEFAA 518

Query: 260 ----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                + H LRH+ A+H L+ G DL +++  L H  +STT  Y
Sbjct: 519 RLQQASPHWLRHTHASHALAGGVDLVAVRDNLRHASISTTSTY 561


>gi|206575607|ref|YP_002235679.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
 gi|206570451|gb|ACI12097.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
          Length = 246

 Score = 42.4 bits (98), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 77/168 (45%), Gaps = 30/168 (17%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRI----------QGKGDKIRIV 200
           D R+  +   L+  G+RI EA +LTP++   D  +  +R+          +   D++R+V
Sbjct: 59  DQRHHMLFATLWNIGIRIGEARTLTPESFDLDGLRPFVRVLSEKVRARRGRPPKDEVRLV 118

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR-------Y 253
           PL  +     +E + +         + PL+      P+     + +++Q  +       +
Sbjct: 119 PLTDASFVRQMESWMVT---TRPRQREPLW------PVTDETMRNWLKQAVKRAEAGGVH 169

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             +P+  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 170 FSIPV--TPHTFRHSYIMHMLYHRQPRKVIQALAGHKDPRSMEVYTRV 215


>gi|189459447|ref|ZP_03008232.1| hypothetical protein BACCOP_00070 [Bacteroides coprocola DSM 17136]
 gi|189463074|ref|ZP_03011859.1| hypothetical protein BACCOP_03776 [Bacteroides coprocola DSM 17136]
 gi|189430226|gb|EDU99210.1| hypothetical protein BACCOP_03776 [Bacteroides coprocola DSM 17136]
 gi|189433843|gb|EDV02828.1| hypothetical protein BACCOP_00070 [Bacteroides coprocola DSM 17136]
          Length = 113

 Score = 42.4 bits (98), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 33/58 (56%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           G   + ++ L   LG+  + T +  RHSFA+ L  +G ++  I   LGH  L+TTQIY
Sbjct: 39  GKVNKNLKLLAAQLGVEANVTTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIY 96


>gi|148654999|ref|YP_001275204.1| integron integrase [Roseiflexus sp. RS-1]
 gi|148567109|gb|ABQ89254.1| integron integrase [Roseiflexus sp. RS-1]
          Length = 319

 Score = 42.4 bits (98), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 31/61 (50%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+P   Q+ I       G+    TAHTLR +FA  L   G  L  IQ ++GH  + TTQ 
Sbjct: 240 LHPSGVQKAITAAVHAAGMTKRATAHTLRAAFAHRLKEAGYQLDDIQQLMGHADIRTTQH 299

Query: 298 Y 298
           Y
Sbjct: 300 Y 300


>gi|331091365|ref|ZP_08340204.1| hypothetical protein HMPREF9477_00847 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404229|gb|EGG83776.1| hypothetical protein HMPREF9477_00847 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 406

 Score = 42.4 bits (98), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 43/185 (23%)

Query: 159 ILYLLYGCGLRISEALSLTPQNI--------MDDQSTLRIQGKGDK-----------IRI 199
           +L ++ G G+R  E + LT +++        +D Q   +  G G K           IRI
Sbjct: 203 MLTIMIGTGVRCGELIGLTWKDVNIKAKTVSVDHQLIYKNLGDGCKFHISTPKTESGIRI 262

Query: 200 VPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGI-----RGKPLNPGVFQRYI----- 247
           +P+   V KA  E   +  F L  + +I++  + G       G+PL P      +     
Sbjct: 263 IPMTQEVAKAFEEQRKI-NFMLAKDKSIEVDGYSGFVFTAKSGRPLMPSAVNSVLYNIVD 321

Query: 248 ----------RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
                     ++  R   L L  +AH +RH+  T +     D++ +Q I+GH  +  T +
Sbjct: 322 AYNKTEVERAKKEHRKAELLLKFSAHVMRHTACTRMAECRMDVKVLQYIMGHAHIDVTME 381

Query: 297 IYTNV 301
           +Y ++
Sbjct: 382 VYNHI 386


>gi|317501727|ref|ZP_07959915.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316896875|gb|EFV18958.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 300

 Score = 42.4 bits (98), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 85/197 (43%), Gaps = 39/197 (19%)

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD---- 183
           AL E+Q  +L+  +     +   + D      + +L   GLRISE   LT   IMD    
Sbjct: 93  ALTEEQEQSLLSFIKTDNVYHKYYDD------VLILLKTGLRISELCGLT---IMDVDFI 143

Query: 184 ------DQSTLRIQGKG---------DKIRIVPL----LPSVRKAILEYYDLCPFDLNLN 224
                 D   L+ + +G           IR VPL    + + ++ + +     PF ++  
Sbjct: 144 HEVVVIDHQLLKSKEQGYYIETPKTKSGIRQVPLSRETIQAFQRVMKKRSKAEPFVIDGR 203

Query: 225 IQLPLFRGIRGKPLNPGVFQR-YIRQLRRY----LGLPL-STTAHTLRHSFATHLLSNGG 278
               LF   +GKP     +   ++R +++Y       PL   T HTLRH+F T L S   
Sbjct: 204 SNF-LFVNHKGKPKVAIDYSTLFVRMVKKYNKHHKDNPLPHITPHTLRHTFCTRLASKNM 262

Query: 279 DLRSIQSILGHFRLSTT 295
           + + +Q I+GH  +S T
Sbjct: 263 NPKDLQYIMGHSNISIT 279


>gi|295107192|emb|CBL04735.1| Site-specific recombinase XerC [Gordonibacter pamelaeae 7-10-1-b]
          Length = 427

 Score = 42.4 bits (98), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 23/109 (21%)

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLR------------RYL---GLP-LSTTA------HTL 265
           P+   + G   +P +F R+ R+              RY+   G+P +  T       H L
Sbjct: 312 PVVTNVYGGYYDPNIFGRWFREFCVENGFGEQGRAIRYVDSRGIPRIKRTGYEGLKFHEL 371

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDWMMEI 313
           RH+ AT L+SNG D++++Q+ LGH   + T  IY +   +N  +   EI
Sbjct: 372 RHTQATLLISNGADIKTVQNRLGHSTAALTMDIYAHAIEQNDREAADEI 420


>gi|281424826|ref|ZP_06255739.1| integrase [Prevotella oris F0302]
 gi|299142377|ref|ZP_07035509.1| integrase [Prevotella oris C735]
 gi|281401196|gb|EFB32027.1| integrase [Prevotella oris F0302]
 gi|298576099|gb|EFI47973.1| integrase [Prevotella oris C735]
          Length = 414

 Score = 42.4 bits (98), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 27/158 (17%)

Query: 162 LLYGC--GLRISEALSLT---PQNIMDDQSTLRIQGKGDKIR-IVPLLPSVRKAIL---- 211
            ++ C  GL I++   L     Q   D Q  +R + +  K+  IVPL P + +AI+    
Sbjct: 242 FVFACFTGLAIADMEHLQFGHVQTAADGQKYIRKERQKTKVEFIVPLHP-IAEAIINQCK 300

Query: 212 -------EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
                  E   +   D +L       R +    L+          + +  G+    + H 
Sbjct: 301 KEQPSMKEMQTVKEKDNDLVFHCTCSRSVMNAKLSI---------VGKACGIRERLSYHM 351

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            RH+F T  LS G  + SI  ++GH  +S+TQIY  V 
Sbjct: 352 ARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVT 389


>gi|229489816|ref|ZP_04383673.1| integrase/recombinase [Rhodococcus erythropolis SK121]
 gi|229323326|gb|EEN89090.1| integrase/recombinase [Rhodococcus erythropolis SK121]
          Length = 360

 Score = 42.4 bits (98), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 72/171 (42%), Gaps = 27/171 (15%)

Query: 155 RNSAILYLLYGCGLRISEALSL----------TPQNIMDDQSTLRI----QGKGDKIRIV 200
           R+SA+L   Y  GLR SE   +           PQ       ++R     +G   K R V
Sbjct: 174 RDSAMLKFTYAFGLRRSEVARVDIVDLRRNVKAPQYSRMGSVSIRYGKASRGGPPKRRTV 233

Query: 201 PLLPSVRK--AILEYY--DLCP-FDLNLNIQLPL---FRGIRGKPLNPGVFQRYIRQLRR 252
             +P +     +LE+Y  D+ P +D   +  L +      I G+ +N           R 
Sbjct: 234 LTVPEMDWIVEVLEHYLTDVRPAYDPKKHPALWVTERVTRISGRAVNEA-----FTTARL 288

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             GL  S   H LRHS+ THL+      R +Q   GH   STT IYT V++
Sbjct: 289 LAGLDDSLDLHCLRHSYITHLIEFDYPERFVQEQAGHAFASTTAIYTGVSN 339


>gi|158339256|ref|YP_001520433.1| phage integrase [Acaryochloris marina MBIC11017]
 gi|158309497|gb|ABW31114.1| phage integrase, putative [Acaryochloris marina MBIC11017]
          Length = 298

 Score = 42.4 bits (98), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 26/167 (15%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI-- 210
           DAR  A++ LL+  G RISE L+L    +   Q   ++ GKG+K R      +   A+  
Sbjct: 129 DARLYALVKLLHHSGARISEILALDLAEVDLGQRQFQVVGKGNKTRWCFYSENAAAALQT 188

Query: 211 -LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV----------FQRYIRQLRRYLGLPLS 259
            +++Y   P         P     R  P +             + + I+   +  G+ L 
Sbjct: 189 YIQHYRYTPS--------PALFTARKTPTSQVTRLSYRTAHHHWHQSIQGYPQIQGIRL- 239

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
              H LRH+FAT  +   G L  +++++GH  + TT  Y  V S+  
Sbjct: 240 ---HDLRHTFATERVGLMG-LEELRALMGHQHIQTTLRYQTVTSEQA 282


>gi|115379499|ref|ZP_01466594.1| site-specific recombinase, phage integrase family [Stigmatella
           aurantiaca DW4/3-1]
 gi|310822637|ref|YP_003954995.1| phage integrase [Stigmatella aurantiaca DW4/3-1]
 gi|115363508|gb|EAU62648.1| site-specific recombinase, phage integrase family [Stigmatella
           aurantiaca DW4/3-1]
 gi|309395709|gb|ADO73168.1| phage integrase [Stigmatella aurantiaca DW4/3-1]
          Length = 87

 Score = 42.4 bits (98), Expect = 0.095,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           GL      H LRHSFA+HL+  G  L+++Q +LGH  +  T  Y +++
Sbjct: 14  GLAQRLGWHDLRHSFASHLVMRGVALKAVQELLGHATIDMTMRYAHLS 61


>gi|200388241|ref|ZP_03214853.1| integrase [Salmonella enterica subsp. enterica serovar Virchow str.
           SL491]
 gi|9944851|gb|AAG03003.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|199605339|gb|EDZ03884.1| integrase [Salmonella enterica subsp. enterica serovar Virchow str.
           SL491]
 gi|239842528|gb|ACS32045.1| integrase [Salmonella enterica subsp. enterica]
 gi|260667576|gb|ACX47954.1| integrase [Salmonella enterica subsp. enterica serovar Kentucky]
          Length = 405

 Score = 42.4 bits (98), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 28/47 (59%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           G+    T H  RH+FA   L+ G D+ S+  +LGH  L TT+IY ++
Sbjct: 320 GVQKHVTFHVGRHTFAVAQLNRGVDIYSLSRLLGHSELRTTEIYADI 366


>gi|306815648|ref|ZP_07449797.1| putative phage integrase [Escherichia coli NC101]
 gi|305851310|gb|EFM51765.1| putative phage integrase [Escherichia coli NC101]
          Length = 352

 Score = 42.4 bits (98), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 56/262 (21%), Positives = 112/262 (42%), Gaps = 40/262 (15%)

Query: 79  RTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +TQ +   +    ++ +++   + +KK  +    N L   ++ K     + LN+ Q + +
Sbjct: 66  KTQSLSTYTWNNKVAHLRAIFGFGIKKGLLPQTENPLCEASVAKEAKKKKTLNKDQMIQV 125

Query: 138 VDNVLLHTSHETKW---IDARNSA---------ILYLLYGCGLRISEALSLTPQNIMDDQ 185
              V     +ET+     D R +A         +L +L   G+R ++   +  +++   +
Sbjct: 126 YLVVQKFAEYETQQRVPCDRRRNALYPARYWLTVLDVLRYTGMRFNQLQHIRLKDVRPGE 185

Query: 186 STLRIQGKGDKIR---IVPLLPSVRKAILEY----------------YDLCPFDLNLNIQ 226
             + +Q +G K      VP++  + KA LE                 +D+C F   +   
Sbjct: 186 GVIELQLEGSKTHREWCVPIVAPL-KAPLELLLSRARRLGAGPDDFLFDVCRFTDCIEPD 244

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL-SNGGDLRSIQS 285
             ++  +R      G F+R    L R  G  +S  AH  RH+ AT L+ S   ++  ++S
Sbjct: 245 DYVYCPVRAHQAVKGFFRR----LSRECGFLVS--AHRFRHTLATILMESPERNMHLVKS 298

Query: 286 ILGHFRLSTTQIYTNVNSKNGG 307
           +LGH  ++TT  Y +V+  +  
Sbjct: 299 MLGHQSIATTMEYVDVSVASAA 320


>gi|312195374|ref|YP_004015435.1| integrase family protein [Frankia sp. EuI1c]
 gi|311226710|gb|ADP79565.1| integrase family protein [Frankia sp. EuI1c]
          Length = 304

 Score = 42.4 bits (98), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 109/250 (43%), Gaps = 21/250 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  T+QSY      F+ +L   TE+ +  ++   ++   + A++    ++++   ++ + 
Sbjct: 29  SPATIQSYLTVGESFVGYL---TEQGMP-RSAGAIAREHVEAYLVSL-SERVSAATVAKH 83

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL---LHTSHE 148
              ++   ++L +    + +    M       S P A+ E+    L D+VL   L     
Sbjct: 84  YRSLQQLFRWLVEDGEISRTPFERM-------SAP-AVPEQPVPILGDDVLRKLLDACKG 135

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
             + + R++AI+ L    G+RI E + L+  ++  D     + GKG + R VP       
Sbjct: 136 NSFENRRDAAIIRLFLDTGVRIGELVGLSVDDLDFDHDVAHVMGKGRRGRAVPYGNRTAD 195

Query: 209 AILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           A+  Y  +     +   + P L+ G +G   + G+ Q   R+     G+P    AH  RH
Sbjct: 196 ALRRY--IRARARHGQAKSPALWLGKKGPMTSSGISQMLERRAAD-AGVP-KLHAHQFRH 251

Query: 268 SFATHLLSNG 277
           +FA   L+ G
Sbjct: 252 TFAHAWLAAG 261


>gi|237732963|ref|ZP_04563444.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229383953|gb|EEO34044.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 396

 Score = 42.4 bits (98), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 38/197 (19%)

Query: 121 KSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           + +S P+ AL+E+Q   L+D  + H +   K+ D      + +L   GLRISE   LT +
Sbjct: 183 EDDSEPKVALSEEQEQALLD-FMAHDNVYRKYYDD-----VLILLKTGLRISELCGLTKK 236

Query: 180 NI-------------MDDQSTLRIQGKGDK--IRIVPLLPSVRKAIL------EYYDLCP 218
           ++             + D+    I     K  IR VP+     +A        +  ++  
Sbjct: 237 DLDFENHAISVNHQLLKDKDGYYIDEPKTKSGIRKVPMSDETEQAFQRVLKRKQKSNIKE 296

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRY-----LGLPLSTTAHTLRHSFATH 272
            D   N    LF    G P++  +++  + R +++Y     + LP   T HTLRH+F T 
Sbjct: 297 IDGYRNF---LFLNTSGSPVHKQMYETILKRMVQKYNKTHEVKLP-KITPHTLRHTFCTR 352

Query: 273 LLSNGGDLRSIQSILGH 289
           L     + +++Q I+GH
Sbjct: 353 LAQKNMNPKNLQYIMGH 369


>gi|283795165|ref|ZP_06344318.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Clostridium sp. M62/1]
 gi|291076811|gb|EFE14175.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Clostridium sp. M62/1]
          Length = 466

 Score = 42.4 bits (98), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS-NGG 278
           D +L + LP      G+P    + ++    L+   GLP +   H+LRHS  T+ L  N G
Sbjct: 318 DFDLVVALP-----NGRPCENRIIEKEFSILKEKAGLP-NVVFHSLRHSSTTYKLKLNHG 371

Query: 279 DLRSIQSILGHFRLST-TQIYTNV 301
           DL++ Q   GH  +   T++Y ++
Sbjct: 372 DLKATQGDTGHAEIDMITKVYAHI 395


>gi|168483221|ref|ZP_02708173.1| tyrosine recombinase XerC [Streptococcus pneumoniae CDC1873-00]
 gi|172043478|gb|EDT51524.1| tyrosine recombinase XerC [Streptococcus pneumoniae CDC1873-00]
          Length = 356

 Score = 42.4 bits (98), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 104/265 (39%), Gaps = 46/265 (17%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--------PRALNEK 132
           Q +   ++ R+LS + S  KYL +     +      RN+ K  S          RA N K
Sbjct: 99  QGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIK 158

Query: 133 QALTLVDNVLLHTSHETKWID-------------------ARNSAILYLLYGCGLRISEA 173
           Q L L D     T+    +ID                    R+ AI+ LL   G+R+SEA
Sbjct: 159 QKLFLGD----ETAGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEA 214

Query: 174 LSLTPQNI---MDDQSTLRIQGKGDKIRIV----PLLPSVRKAILEYYDLCPFDLNLNIQ 226
           ++L  +++   M      R  GK D + +     P L +      + Y     D  L   
Sbjct: 215 VNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKTDTALF-- 272

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           L L+RG+  + ++    ++ + +        +  T H LRH+ AT L         +   
Sbjct: 273 LTLYRGVPNR-IDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQ 329

Query: 287 LGHFRLSTTQIYTNVNS---KNGGD 308
           LGH     T +YT++ S   KN  D
Sbjct: 330 LGHASTQVTDLYTHIVSDEQKNALD 354


>gi|312977304|ref|ZP_07789052.1| phage integrase [Lactobacillus crispatus CTV-05]
 gi|310895735|gb|EFQ44801.1| phage integrase [Lactobacillus crispatus CTV-05]
          Length = 385

 Score = 42.4 bits (98), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 69/169 (40%), Gaps = 33/169 (19%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG------KGDKIRIVPLLPSVRKAIL 211
           A   +L   GLR  EAL+L  +NI  D+  + I        +  K+   P   S ++   
Sbjct: 207 AFFVVLGNLGLRRGEALALKWKNIDFDKQIVHIDHTVSHDLQNKKVIGDPKTYSAKR--- 263

Query: 212 EYYDLCPFDLNLNIQLPLFRGIR---------------GKPLNPGVFQRYIRQLRRYLGL 256
              DL     NLN  L  +R  +               G   N      +++ +  +   
Sbjct: 264 ---DLA-LSKNLNYVLREYRKTQKVFNRDDDYIFHTKNGSFFNSPAVSEWMKSIYHFYPE 319

Query: 257 PLSTTAHTLRHSFATHLLSNGGDL---RSIQSILGHFRLSTT-QIYTNV 301
               TAH  RHS AT LL  G D    + +Q +LGH R++T   IYT+V
Sbjct: 320 LRKITAHGFRHSLAT-LLYEGSDKITPKDVQYVLGHSRVTTALNIYTHV 367


>gi|309777756|ref|ZP_07672705.1| putative integrase/recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914522|gb|EFP60313.1| putative integrase/recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 260

 Score = 42.4 bits (98), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 9/145 (6%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +L  +   G+R+SE   +T + +    + +R +GK  +I    L P+  K  L  Y  C 
Sbjct: 99  LLQTICSTGIRVSEIRFITVEALKKGSAVIRNKGKIREI----LFPAKLKQTLIRY--CR 152

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNG 277
            D ++ I   +F   +G  L+     R ++ L  Y  + P     H LRH FA       
Sbjct: 153 -DRDI-INGAVFLTSQGNHLDRSNVWRMMKNLCAYASVDPEKVFPHNLRHLFAYTFYRME 210

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVN 302
            DL  +  +LGH  + TT+IYT  +
Sbjct: 211 KDLVRLADLLGHSSIETTRIYTKTS 235


>gi|291526261|emb|CBK91848.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 376

 Score = 42.4 bits (98), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 95/235 (40%), Gaps = 57/235 (24%)

Query: 116 MRNLKKSNSLP----RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
           +R LKK++       RAL + +    ++ +  H ++E  W       +  ++ G GLR+ 
Sbjct: 132 LRELKKAHCFQSEKRRALTKPEQELFLNFLKTHPAYE-HWY-----PVFAVMIGTGLRVG 185

Query: 172 EALSL------TPQNIMDDQSTL-----RIQGKGD-------------KIRIVPLLPSVR 207
           E   L          ++D   TL     R +G                 +R VP+L  VR
Sbjct: 186 EVTGLRWCDIDMESGMIDVNHTLVYYDHRTEGSKSGCYFNVNTTKTPASMRQVPMLGFVR 245

Query: 208 KAILEYYDLCPFDLNLNIQLPL-------FRGIRGKPLNPGVFQRYIRQLRRYLG----- 255
           +A  E       DL L+ ++ +       F    G+  +     + IR++ R        
Sbjct: 246 EA-FEQEKQKQEDLGLHCEVTIDGYTDFIFINRFGQAQHQATLNKAIRRIIRDCNDEQFL 304

Query: 256 --------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
                   LP   + H+LRH+F T +   G +++ IQ  LGH  +STT  IY +V
Sbjct: 305 HSDEPDVLLP-HFSCHSLRHTFTTRMCEAGVNIKVIQDALGHSDISTTLNIYADV 358


>gi|260891942|ref|YP_003238039.1| integrase family protein [Ammonifex degensii KC4]
 gi|260864083|gb|ACX51189.1| integrase family protein [Ammonifex degensii KC4]
          Length = 383

 Score = 42.4 bits (98), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G P++P  F    R+L   LG+      H LRH+ AT LL  G  L+ +   LGH  ++ 
Sbjct: 299 GSPIDPHAFSSAFRKLASKLGI--DANFHALRHTHATMLLKAGVHLKIVSERLGHASVAI 356

Query: 295 T-QIYTNV 301
           T  +Y++V
Sbjct: 357 TGDLYSHV 364


>gi|237737544|ref|ZP_04568025.1| predicted protein [Fusobacterium mortiferum ATCC 9817]
 gi|229419424|gb|EEO34471.1| predicted protein [Fusobacterium mortiferum ATCC 9817]
          Length = 263

 Score = 42.4 bits (98), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 15/147 (10%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           TL+ Y  D   F  F+    ++ + ++T   ++Y E          +K  D S+ R LS 
Sbjct: 21  TLEIYRKDIEDFDGFIV--GKDLLDVETQDIINYIE-------ELRKKYSDMSIYRKLSS 71

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           IKSF KYL K KI  E  + ++    +   +   L   +   ++D  + + S+E +    
Sbjct: 72  IKSFYKYLLKSKIIDEIPVKDIELPNRVKKVTEPLERWELKRILD--ICNDSYEER---- 125

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI 181
           R+S ++ LLY  G +I + L+L  +++
Sbjct: 126 RDSLVIKLLYETGFKIGDILNLEKESL 152


>gi|84517230|ref|ZP_01004585.1| Phage integrase [Loktanella vestfoldensis SKA53]
 gi|84508905|gb|EAQ05367.1| Phage integrase [Loktanella vestfoldensis SKA53]
          Length = 445

 Score = 42.4 bits (98), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           GLP     H LRH+FA+ L++NG  +  +Q +LGH ++ TTQ Y ++  +
Sbjct: 322 GLP-DVRLHDLRHTFASLLINNGRSIYEVQKLLGHTQIKTTQRYAHLTQE 370


>gi|282848850|ref|ZP_06258240.1| site-specific recombinase, phage integrase family [Veillonella
           parvula ATCC 17745]
 gi|282581355|gb|EFB86748.1| site-specific recombinase, phage integrase family [Veillonella
           parvula ATCC 17745]
          Length = 350

 Score = 42.4 bits (98), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 32/139 (23%)

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDK----------------IRIVPLLPSVRKA 209
            G R  E L+LT  +I    +T+RI  +  +                IR +P+ P +   
Sbjct: 198 TGARYGEILALTWLDIDLAYNTIRINKQWSRTSNNTFGVKEPKTRNSIRTLPIPPILSNI 257

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +LEY  +   +   NI             + G     IR +     +P + T H  RH++
Sbjct: 258 LLEYKSISNTERLFNINTS----------STGNVNYAIRTI-----VP-NKTIHAFRHTY 301

Query: 270 ATHLLSNGGDLRSIQSILG 288
           AT LL+NG D++++ S+LG
Sbjct: 302 ATTLLANGVDIKTVASLLG 320


>gi|153810221|ref|ZP_01962889.1| hypothetical protein RUMOBE_00602 [Ruminococcus obeum ATCC 29174]
 gi|153811731|ref|ZP_01964399.1| hypothetical protein RUMOBE_02124 [Ruminococcus obeum ATCC 29174]
 gi|153811868|ref|ZP_01964536.1| hypothetical protein RUMOBE_02261 [Ruminococcus obeum ATCC 29174]
 gi|149832002|gb|EDM87087.1| hypothetical protein RUMOBE_02261 [Ruminococcus obeum ATCC 29174]
 gi|149832134|gb|EDM87219.1| hypothetical protein RUMOBE_02124 [Ruminococcus obeum ATCC 29174]
 gi|149833400|gb|EDM88481.1| hypothetical protein RUMOBE_00602 [Ruminococcus obeum ATCC 29174]
          Length = 322

 Score = 42.4 bits (98), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 121/287 (42%), Gaps = 47/287 (16%)

Query: 51  AFYTEEKI-------TIQTIRQLSYT--EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY 101
           A+ +EEK+        +Q   +L+    E+ A  S+ R  + GD    R +S +K   +Y
Sbjct: 26  AYNSEEKLLKRFDTFCVQNYPELTTVTYEMAAKWSEARPGE-GDAYHNRRMSMVKVLSEY 84

Query: 102 LKKRKITTESNILNM--RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           +    +  E+ I N   +  +    +P     K+ L  +D    H S + + +D R   I
Sbjct: 85  I--LSLGQEAYIPNFFCKAYRPVLYIPSKEEVKELLQKMDIRTSHNSEQFR-LD-RECKI 140

Query: 160 LYLLY-GCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLC 217
           L+LLY  CGLR+SE   L  ++I  D+  L + G KG+K R+V  LP     +L+ Y   
Sbjct: 141 LFLLYFCCGLRLSEGRLLKWEHIDLDKGILTVLGSKGNKDRLV-YLPQDSLPVLKNYK-- 197

Query: 218 PFDLNLNIQLPLFRGIR----GK-PLNP----GV---FQRYIRQLRRYLGLPLSTTAHTL 265
                   Q  LF GI     GK P  P    GV   F R+   L     +    T H L
Sbjct: 198 ------ERQEMLFPGIDWAFPGKDPHKPVSCSGVESSFNRHWAMLPVARTVDKHPTPHCL 251

Query: 266 RHSFAT----HLLSNGGD----LRSIQSILGHFRLSTTQIYTNVNSK 304
           RH+F        +  G D    L  +   LGH     T  Y ++  K
Sbjct: 252 RHAFVVERFNEWMHQGIDTNTMLPYLSRYLGHKSPDETYYYYHLVEK 298


>gi|49486813|ref|YP_044034.1| integrase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|49245256|emb|CAG43729.1| integrase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|319894719|gb|ADV76530.1| integrase [Staphylococcus phage TEM126]
          Length = 345

 Score = 42.4 bits (98), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 73/148 (49%), Gaps = 5/148 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+S  L+++   G R+S A ++  ++I   ++T+ I  +  K    P   S+ K+ +++ 
Sbjct: 183 RSSLALFIMICTGCRVSGARNIKTEHINQVKNTIFIDER--KTDTSPRYISIAKSDMKHI 240

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                   ++    +F+   G  +N       ++   R   +P+  T+H LRH+  ++LL
Sbjct: 241 MDVISTFAISYDGYIFKEA-GSIINLQAINNALKSACRVNNIPI-ITSHALRHTHCSYLL 298

Query: 275 SNGGDLRSIQSILGHFRLS-TTQIYTNV 301
           + G  +  I   LGH  ++ TT +Y+++
Sbjct: 299 AKGVSIHYISKRLGHKNIAITTSVYSHL 326


>gi|331086908|ref|ZP_08335985.1| hypothetical protein HMPREF0987_02288 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410074|gb|EGG89509.1| hypothetical protein HMPREF0987_02288 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 463

 Score = 42.4 bits (98), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS-NGGDLRSIQSILGHFRLS 293
           G P+  G  +  +++L     LP     H+LRHS  T+ L  NGGD++++Q   GH ++ 
Sbjct: 329 GNPIGTGAIRGQLKKLIEEHNLP-PVVFHSLRHSSVTYKLKLNGGDIKAVQGDSGHSQVD 387

Query: 294 -TTQIYTNV 301
             T +Y+++
Sbjct: 388 MVTDVYSHI 396


>gi|291521434|emb|CBK79727.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 422

 Score = 42.4 bits (98), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 89/203 (43%), Gaps = 42/203 (20%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK-------GDKI---------RIVPLL 203
           +Y+L+  GLRISE   LT  +I   + T+ I  +       GD I         R +P+ 
Sbjct: 217 IYILFKTGLRISEFCGLTISDIDFKEHTINIDHQLQKKSKIGDYIQETKTTSGTRKIPMT 276

Query: 204 PSVRKA---ILEYYD-------------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
             V K    I+E  +                FD N +I   L      +     + Q+Y 
Sbjct: 277 ADVEKCFRKIIEKRNPPKVEPMVDGKSGFLYFDKNESICYSL----HWEHYFQHIIQKYN 332

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNG 306
              +  + +P+  T H  RH++ +++  +G + +++Q ++GH  +S T  +YT++   + 
Sbjct: 333 NTYK--VQMPV-ITPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNVYTHIGFDDA 389

Query: 307 GDWM--MEIYDQTHPSITQKDKK 327
            + +  ME + +    + QK +K
Sbjct: 390 EEELKRMEEFRKAQAEVEQKKEK 412


>gi|255016381|ref|ZP_05288507.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 387

 Score = 42.4 bits (98), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           IR + +  G+    T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY  +  +
Sbjct: 305 IRAVAKRCGITKHITWHQSRHTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYAKITKE 363


>gi|254883641|ref|ZP_05256351.1| transposase [Bacteroides sp. 4_3_47FAA]
 gi|319642287|ref|ZP_07996946.1| transposase [Bacteroides sp. 3_1_40A]
 gi|254836434|gb|EET16743.1| transposase [Bacteroides sp. 4_3_47FAA]
 gi|317386143|gb|EFV67063.1| transposase [Bacteroides sp. 3_1_40A]
          Length = 410

 Score = 42.4 bits (98), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYT 299
           G   + ++ + R  G  +  T H  RH+ AT  LLS+G  + ++  +LGH  + TTQIY 
Sbjct: 322 GSCNKILKDIGRQCGFKVRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYA 381

Query: 300 NVNSK 304
            + ++
Sbjct: 382 KITAQ 386


>gi|198277086|ref|ZP_03209617.1| hypothetical protein BACPLE_03294 [Bacteroides plebeius DSM 17135]
 gi|270296266|ref|ZP_06202466.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|198269584|gb|EDY93854.1| hypothetical protein BACPLE_03294 [Bacteroides plebeius DSM 17135]
 gi|270273670|gb|EFA19532.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 268

 Score = 42.4 bits (98), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 14/144 (9%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           ++  L   G R+SE + +  +++        I  KG KIR + +  S+RK   E+     
Sbjct: 117 VVRFLAATGARVSELIQMKAEHV--QMGYFDIYTKGGKIRRIYIPKSLRKEATEWLS--- 171

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY---LGLPLSTT-AHTLRHSFATHLL 274
             +N             +    G+ Q    QL+ Y    GL       H+ RH FA + L
Sbjct: 172 -KVNRTTGYLFLNRFGERITTRGIAQ----QLKNYAAKYGLNEKVVYPHSFRHRFAKNFL 226

Query: 275 SNGGDLRSIQSILGHFRLSTTQIY 298
               D+  +  ++GH  + TT+IY
Sbjct: 227 EKFNDISLLADLMGHESIETTRIY 250


>gi|153838484|ref|ZP_01991151.1| integrase [Vibrio parahaemolyticus AQ3810]
 gi|149748107|gb|EDM58966.1| integrase [Vibrio parahaemolyticus AQ3810]
          Length = 392

 Score = 42.4 bits (98), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 28/47 (59%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           G+    T H  RH+FA   LS G D+ ++  +LGH  L TT+IY ++
Sbjct: 321 GISKHVTFHAGRHTFAVIQLSRGIDIYAVSKLLGHSELKTTEIYADI 367


>gi|326795207|ref|YP_004313027.1| integrase family protein [Marinomonas mediterranea MMB-1]
 gi|326545971|gb|ADZ91191.1| integrase family protein [Marinomonas mediterranea MMB-1]
          Length = 283

 Score = 42.4 bits (98), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 10/148 (6%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILE 212
            +  A + L Y  G+R  E + L   ++    S ++I +GKG + R V     ++  + E
Sbjct: 118 GKAKAAIMLAYATGMRAGEIVRLKVPDLDGKNSCIKIREGKGRRDRYVLFPEGLKVPLRE 177

Query: 213 YYDLC-PFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           Y+ +  P D        +  G+ + + ++    +R ++   +   +      H+LRH+FA
Sbjct: 178 YWRVFRPTDY-------VVYGLDKDRKIDTSTLRRGLKLAAQQAEIHKEVRFHSLRHAFA 230

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIY 298
            H L  G  L  +Q +LGH  + TT  Y
Sbjct: 231 CHQLLRGMPLPRLQILLGHQVIQTTFRY 258


>gi|313900576|ref|ZP_07834069.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312954638|gb|EFR36313.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 356

 Score = 42.4 bits (98), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 75/149 (50%), Gaps = 20/149 (13%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI-----RIVPLLPSVRKAILEY 213
           IL ++Y  G R+ E  ++  +++  D   + I+G G KI     R+VP+   ++K +++Y
Sbjct: 207 ILIMIY-TGFRVGELFNIRREDV--DVQNMTIRG-GSKIEAGKNRLVPVHEKIQKYVMDY 262

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ-RYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           Y      L  +  L      R K  N  +++ +Y  ++   L   +    H  RH+FAT 
Sbjct: 263 Y------LQGHEYLISDADTR-KKFNYHMYRNQYFDKIMDML--EMEHLPHDCRHTFATR 313

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQ-IYTN 300
           L + G +   I+ ++GH   +TT+ IYT+
Sbjct: 314 LSNYGANSTCIKKLIGHSSYTTTEKIYTH 342


>gi|302870559|ref|YP_003839196.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
 gi|302573418|gb|ADL49620.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
          Length = 491

 Score = 42.4 bits (98), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 120/336 (35%), Gaps = 68/336 (20%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLI-FLAFYTEEKITIQTIRQLSYTEIRAFISK-----R 78
           LE  RGL++ T++ Y    R +L+  L      KI IQ++R      +   I +     R
Sbjct: 142 LEGRRGLAEKTVRGYSDHIRLYLVPHLG-----KIPIQSLRTAHIEAMFTAIGRQQDAIR 196

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN---------MRNLKKSNSLPRAL 129
             +   D  ++  + G++       +R   T    LN           N      LP A 
Sbjct: 197 AARASTDPDVRARVKGVRPMEASSIQRLYATLRKALNDAVVRAKLIPTNPALGVELPTAK 256

Query: 130 NEKQALTLVDNV-LLHTSHETK-----WIDA----------RNSAILYLLY----GCGLR 169
             K  +  V  V   H + +       W+ A          R+  +LY ++      GLR
Sbjct: 257 RPKARVWTVKAVEHWHATGKRPSPVMVWMPAQAGRFLDYTERHDIVLYAMFLLILHRGLR 316

Query: 170 ISEALSLTPQNIMDDQSTLRI-----------------QGKGDKIRIVPLLPSVRKAILE 212
             EA  L   ++  D   L +                    GD  R+VPL P     +  
Sbjct: 317 RGEACGLRDHDVDLDAGYLTVVEQITTVGYTPITRPVKSDAGD--RMVPLGPKTIAVLRT 374

Query: 213 YYDL------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           Y D+         D   +  L  F    GKP +P         L     LP     H LR
Sbjct: 375 YLDMRRRWKSVSGDDWPDTGL-FFVRPDGKPWHPQTISDRFDHLVAKAKLP-PVRLHDLR 432

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNV 301
           H  AT+L   G D++ +Q  LGH  +  T+  YT+V
Sbjct: 433 HCAATYLRHGGADMKEVQETLGHSTIGLTSDTYTSV 468


>gi|41057380|ref|NP_958084.1| gp27 [Enterobacteria phage PsP3]
 gi|37548586|gb|AAN08390.1| gp27 [Enterobacteria phage PsP3]
          Length = 349

 Score = 42.4 bits (98), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           H LRH+F  H + NGG++  +Q ILGH  +  T  Y++
Sbjct: 284 HVLRHTFGAHFMMNGGNILVLQKILGHANIRETMKYSH 321


>gi|320087105|emb|CBY96873.1| Tyrosine recombinase xerC [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 349

 Score = 42.4 bits (98), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           H LRH+F  H + NGG++  +Q ILGH  +  T  Y++
Sbjct: 284 HVLRHTFGAHFMMNGGNILVLQKILGHANIRETMKYSH 321


>gi|282925002|ref|ZP_06332667.1| integrase [Staphylococcus aureus A9765]
 gi|282592696|gb|EFB97703.1| integrase [Staphylococcus aureus A9765]
          Length = 345

 Score = 42.4 bits (98), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 73/148 (49%), Gaps = 5/148 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+S  L+++   G R+S A ++  ++I   ++T+ I  +  K    P   S+ K+ +++ 
Sbjct: 183 RSSLALFIMICTGCRVSGARNIKTEHINQVKNTIFIDER--KTDTSPRYISIAKSDMKHI 240

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                   ++    +F+   G  +N       ++   R   +P+  T+H LRH+  ++LL
Sbjct: 241 MDVISTFAISYDGYIFKEA-GSIINLQAINNALKSACRVNNIPI-ITSHALRHTHCSYLL 298

Query: 275 SNGGDLRSIQSILGHFRLS-TTQIYTNV 301
           + G  +  I   LGH  ++ TT +Y+++
Sbjct: 299 AKGVSIHYISKRLGHKNIAITTSVYSHL 326


>gi|255282217|ref|ZP_05346772.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bryantella formatexigens DSM 14469]
 gi|255267165|gb|EET60370.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bryantella formatexigens DSM 14469]
          Length = 429

 Score = 42.4 bits (98), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIY 314
           L ++   H+LRH+ AT L+ NG D++ +Q  LGH  + TT Q Y + N+       ++I+
Sbjct: 360 LKIAFNYHSLRHTHATTLIENGADIKDVQERLGHDNIQTTMQTYVH-NTDTMSSRSVDIF 418

Query: 315 DQTHPSITQK 324
           +Q   +++QK
Sbjct: 419 EQ---AVSQK 425


>gi|120600872|ref|YP_965446.1| phage integrase family protein [Shewanella sp. W3-18-1]
 gi|120560965|gb|ABM26892.1| phage integrase family protein [Shewanella sp. W3-18-1]
          Length = 405

 Score = 42.4 bits (98), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 28/47 (59%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           G+    T H  RH+FA   L+ G D+ S+  +LGH  L TT+IY ++
Sbjct: 320 GVQKHVTFHVGRHTFAVAQLNRGVDIYSLSRLLGHSELRTTEIYADI 366


>gi|172058627|ref|YP_001815087.1| integrase family protein [Exiguobacterium sibiricum 255-15]
 gi|171991148|gb|ACB62070.1| integrase family protein [Exiguobacterium sibiricum 255-15]
          Length = 275

 Score = 42.4 bits (98), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 65/140 (46%), Gaps = 12/140 (8%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           L+   GLR  EA  L+ ++I     TL +  GKG ++R VPL   +   +  +  L    
Sbjct: 125 LISQTGLRFMEARLLSIEDIQFGTLTLLVRHGKGRRLRTVPLGEGLVSKLQTF--LAGRT 182

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIR-QLRRYLGLPLSTTAHTLRHSFATHLLS-NGG 278
             L     +F+ +RGK +N    +  +R Q     G PL    H LR +FATHL      
Sbjct: 183 TGL-----IFQSVRGKAINEQSARDTLRKQSLATCGRPLH--PHDLRVAFATHLYQVEDC 235

Query: 279 DLRSIQSILGHFRLSTTQIY 298
            L  IQ +LGH    TT+ Y
Sbjct: 236 KLVEIQRLLGHGSTRTTEGY 255


>gi|326778612|ref|ZP_08237877.1| integrase family protein [Streptomyces cf. griseus XylebKG-1]
 gi|326658945|gb|EGE43791.1| integrase family protein [Streptomyces cf. griseus XylebKG-1]
          Length = 374

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 34/72 (47%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           GLP     H LRHS+ THL       R IQ   GH   STT +YT V+ +     + +  
Sbjct: 303 GLPDELELHCLRHSYITHLTEFDYPERFIQDQAGHGYASTTALYTGVSDEYRNRLVHKKL 362

Query: 315 DQTHPSITQKDK 326
            Q +P I +  K
Sbjct: 363 GQRYPGIWEDPK 374


>gi|291280612|ref|YP_003497446.1| site-specific recombinase, phage integrase family [Deferribacter
           desulfuricans SSM1]
 gi|290755314|dbj|BAI81690.1| site-specific recombinase, phage integrase family [Deferribacter
           desulfuricans SSM1]
          Length = 321

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 11/177 (6%)

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ--- 185
           L E++   L++ + +  S     +  RN  ++ LL   GLRISEAL L   +  +     
Sbjct: 131 LTEQEISKLLNYLEVLKSRRESIVTFRNVFLIKLLLYSGLRISEALQLKFTDFEEIAINN 190

Query: 186 ---STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
                ++++GKG           V K ++E   L   +   N    +F    G  L    
Sbjct: 191 TYYYQIKVKGKGQ----TESYAYVPKELIEDEYLYLSESYSNKHNNIFITRNGSILKRQD 246

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
             + I  + +  G+   T  H LRH+FA  L++ G DL  I+ +L H  +++T +Y 
Sbjct: 247 AYKIITNIYKKAGIN-KTGIHLLRHTFAMKLVNAGVDLLHIKELLRHKNVNSTLVYA 302


>gi|70726809|ref|YP_253723.1| integrase [Staphylococcus haemolyticus JCSC1435]
 gi|68447533|dbj|BAE05117.1| integrase [Staphylococcus haemolyticus JCSC1435]
          Length = 341

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 85/184 (46%), Gaps = 21/184 (11%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           S P    + + + L D  +L     TK  D  +S +L+++   G RIS AL+L  + I  
Sbjct: 154 SKPNKSEDSKYINLKDYEILKQHLMTK--DNASSLVLFIMICTGCRISGALNLKREYINQ 211

Query: 184 DQSTLRI-QGKGDKI-RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
            +S + I + K D   R V +       I++  D          QLP  R I G      
Sbjct: 212 VKSEIYIDEHKTDSSPRYVSISQKDMNHIIKSID----------QLP--RTIDGTVFGEL 259

Query: 242 VFQRYIRQLRRY---LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQI 297
                 ++L+ Y   LG+    T+H LRH+  ++LL+ G  +  I   LGH  +S TT++
Sbjct: 260 TNNAVNKRLKVYCNNLGIK-EITSHALRHTHCSYLLAKGISIYYISKRLGHKNISVTTEV 318

Query: 298 YTNV 301
           Y+++
Sbjct: 319 YSHL 322


>gi|53712460|ref|YP_098452.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52215325|dbj|BAD47918.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 371

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 18/148 (12%)

Query: 163 LYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           L+ C   LRIS+ L+L  ++I+D  +       G K   V ++    KA     D+ P  
Sbjct: 223 LFSCMTSLRISDILALRWEDIVDYSA-------GGKC--VHIITQKNKA----EDIIPIS 269

Query: 221 ---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
              L L       +G+  K L     Q  +++  R  G+  + T H+ R +FAT   + G
Sbjct: 270 EEALGLIGYSSEKKGLVFKGLMRCWTQVPMKEWIRSAGITKNITFHSYRRTFATLQGAAG 329

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            D+R+IQS++ H  ++TT  Y  V   N
Sbjct: 330 TDIRTIQSLMAHKSITTTMRYMKVVDSN 357


>gi|37524769|ref|NP_928113.1| MrfI protein [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36784194|emb|CAE13063.1| MrfI protein [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 190

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 8/154 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEY 213
           R+  +L + +  G R+SE  +LT  ++  +   + ++  KG      PL+P   KA+ ++
Sbjct: 27  RDYCMLLMCFIHGFRVSELCNLTLSDLDLNSELIHVRRLKGGLSTTHPLIPEEIKALNQW 86

Query: 214 YDLCPFDLNLNIQLPLFR---GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            ++       + +        G   +    G+ +RY +Q      + +S   H LRH+  
Sbjct: 87  LNIRKSWRESDSEWVFLSQKSGAISRQQVYGLLKRYGKQAL----VNISPHPHMLRHACG 142

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             L   G D R IQ  LGH  +S T IYT  N K
Sbjct: 143 YALADLGRDTRLIQDYLGHRNISHTVIYTASNVK 176


>gi|333030412|ref|ZP_08458473.1| integrase family protein [Bacteroides coprosuis DSM 18011]
 gi|332741009|gb|EGJ71491.1| integrase family protein [Bacteroides coprosuis DSM 18011]
          Length = 406

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 19/150 (12%)

Query: 162 LLYGC--GLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD 215
            ++ C  GL   +   LT  +I +     + I  K  K ++   VPL+   +K + +Y  
Sbjct: 248 FIFSCFTGLAYIDVKELTKNHIRISFDGNIWIMTKRHKTKVNVNVPLMDIPKKILQKYEG 307

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
             P D  L +       +  + +N      Y++++    G+  + T H  RH+FAT + L
Sbjct: 308 ELPDDKILPV-------LSNQKMNA-----YLKEIADVCGINKNLTFHLARHTFATTVTL 355

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + G  + ++  +LGH  + TTQIY  + ++
Sbjct: 356 AKGIPIETVSKMLGHTNIQTTQIYARITNE 385


>gi|319939013|ref|ZP_08013377.1| phage family integrase [Streptococcus anginosus 1_2_62CV]
 gi|319812063|gb|EFW08329.1| phage family integrase [Streptococcus anginosus 1_2_62CV]
          Length = 307

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 13/152 (8%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY 213
           ++ L+   GLR SEAL LTP +      T+ +    D        P     S+RK  +++
Sbjct: 140 LILLIAKTGLRFSEALGLTPDDFDFIHQTISVNKTWDYKNHTGFQPTKNRSSIRKVQIDW 199

Query: 214 YDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
                F     ++    P+F         P    +++ +  + +G+P+  + H LRH+ A
Sbjct: 200 QVGMQFQQLVKSIEHDEPIFATDTICNSTPN---KWLERHCKKIGIPV-ISIHGLRHTHA 255

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQ-IYTNV 301
           + L+  G  + S+   LGH  ++TTQ +Y ++
Sbjct: 256 SLLMFAGVSIASVSRRLGHSSMTTTQKVYMHI 287


>gi|313157871|gb|EFR57277.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 394

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 31/54 (57%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           R ++ L   +GL +  T +  RH+FAT L  +G  +  I   LGH  LSTTQIY
Sbjct: 335 RELKMLGEQIGLEMPLTTYVARHTFATVLKRSGVSVALISESLGHSDLSTTQIY 388


>gi|322833261|ref|YP_004213288.1| integrase family protein [Rahnella sp. Y9602]
 gi|321168462|gb|ADW74161.1| integrase family protein [Rahnella sp. Y9602]
          Length = 351

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           LP     H LRH+FA H + +GG++  +Q ILGH  +  T  Y +
Sbjct: 274 LPRGQLTHVLRHTFAAHFMMSGGNILVLQRILGHSDIQMTMRYAH 318


>gi|289578559|ref|YP_003477186.1| integrase [Thermoanaerobacter italicus Ab9]
 gi|289528272|gb|ADD02624.1| integrase family protein [Thermoanaerobacter italicus Ab9]
          Length = 398

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +F    G+P+ P  F ++  +     GL    T H LRH+ AT L++ G ++R++ + LG
Sbjct: 301 VFTQWNGQPMYPYTFTKWFPKFLEKHGL-RRITFHQLRHTSATLLINAGENVRTVSARLG 359

Query: 289 HFRLSTT-QIYTNV 301
           H   STT  IY + 
Sbjct: 360 HSNTSTTMNIYAHA 373


>gi|222080269|ref|YP_002540133.1| integrase/recombinase [Agrobacterium vitis S4]
 gi|221738914|gb|ACM39693.1| integrase/recombinase [Agrobacterium vitis S4]
          Length = 325

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 124/282 (43%), Gaps = 33/282 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G +  T+++Y     +FL F+   T  ++T     +     + AF++     +   ++++
Sbjct: 41  GCAVSTVRTYGTLAGEFLSFVD--TRGRLT-----ECDARTVEAFVATLSGYQA--KTVE 91

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS---LPRALNEKQALTLVDNVLLHTS 146
           + L  ++SFL+Y  +R+    +++L      KS+    +P   +      ++D +     
Sbjct: 92  QKLCAVRSFLRY-AERQGQVNADVLKAVPAVKSSKHARVPSVWDPADVARILDAI----- 145

Query: 147 HETKWIDARNSAILYLLYGCGLRISEA--LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            +      R+ AI+ L+   GLR  +   L L   +   ++  +R    G +I++ PLL 
Sbjct: 146 DQGNPSGKRDYAIITLVTRLGLRSIDVKRLELDDFDWPGNRLWVRQTKTGHRIQL-PLLK 204

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL----RRYLGLPLST 260
            V  AI+ Y  +     + + +    R     P+ P   Q ++ Q+     R   + LS 
Sbjct: 205 DVGWAIINY--IRHGRPSTDCRQVFLR--HTTPVGPFSDQDHLHQILCKHARVARVTLSD 260

Query: 261 ----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                 H+LRH+ AT L+  G  +  I  ILGH  + TT +Y
Sbjct: 261 HRRHGMHSLRHTLATRLMEGGTPIEEIADILGHQSVGTTGVY 302


>gi|188518220|ref|ZP_03003757.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|198273781|ref|ZP_03206315.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|209554523|ref|YP_002284801.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|225551624|ref|ZP_03772570.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|188998014|gb|EDU67111.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|198249536|gb|EDY74318.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|209542024|gb|ACI60253.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|225379439|gb|EEH01804.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
          Length = 255

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 121/297 (40%), Gaps = 68/297 (22%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +LQ+++ +R LSK T  +YE   R+F +      +E+   Q I+QL     +        
Sbjct: 5   FLQSIK-KRNLSKNTYLTYESHLRKFKV------QEQSFKQIIKQLLNNNYKP------- 50

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                +SLK + S +  + K+ K+ +   +   + +   +KS     +LNE Q    ++ 
Sbjct: 51  -----KSLKLAKSILSEYWKFTKQYQYVQDLQEIKLSKEQKSYKKIFSLNEIQRCLKIN- 104

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                  +TK I    + +L+     G+R  E   L   N         I GKG+K R  
Sbjct: 105 -----KQDTKQIKFYKTILLFYA-TTGIRAMEIYQLKQIN----NDLFVISGKGNKNR-- 152

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-- 258
                          +C  +        L+  I+ K L P       + LR+YL +    
Sbjct: 153 --------------QICYIE-------HLWNNIKNKKL-PST-----KTLRKYLKVFFDN 185

Query: 259 -STTAHTLRHSFATHLLSN------GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            + + HTLR SF T+ L++      G  L+ +Q ++GH  + TT  Y  +  +   D
Sbjct: 186 KNVSLHTLRRSFITNFLTSNDNYKRGDMLKIVQDLVGHENIQTTLQYVQITKEQVDD 242


>gi|86141512|ref|ZP_01060058.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
 gi|295133678|ref|YP_003584354.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
 gi|85832071|gb|EAQ50526.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
 gi|294981693|gb|ADF52158.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
          Length = 388

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 27/47 (57%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           G+    T H+ RH+ A  LL NG D+ ++   LGH  + TT+IY  +
Sbjct: 318 GISKHITFHSARHTNAVLLLENGADIYTVSKRLGHKEIRTTEIYAKI 364


>gi|265751749|ref|ZP_06087542.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263236541|gb|EEZ22011.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 411

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           IR + +  G+    T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY  +  +
Sbjct: 329 IRTVAKRCGITKHITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKE 387


>gi|169350051|ref|ZP_02866989.1| hypothetical protein CLOSPI_00791 [Clostridium spiroforme DSM 1552]
 gi|169293264|gb|EDS75397.1| hypothetical protein CLOSPI_00791 [Clostridium spiroforme DSM 1552]
          Length = 312

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 86/195 (44%), Gaps = 34/195 (17%)

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           L +  N+ + LT  D ++L   +     +  + AIL  LYG GLRI E   L  ++I  +
Sbjct: 101 LAKKKNDCKVLT-SDQIMLLGKYCFNHFEPISLAILLSLYG-GLRIGEFSGLKWKDIDFE 158

Query: 185 QSTLRIQGKGDKI-----------------------RIVPLLPSVRKAILEYYDLCPFDL 221
              +R++   +++                       RI+P+   V + + +YY       
Sbjct: 159 NDLIRVERTVERLKAPANSMTKTQLMLMDPKTATSKRIIPIPVFVMEYVKKYYQ------ 212

Query: 222 NLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
           +  I    F     K + +P   Q    ++ +       +  H+LRH++AT+ + N  D+
Sbjct: 213 HHAIDDEHFIYTNSKNISDPRSIQYSFHRICKLYNF--KSNFHSLRHTYATNCVMNNIDI 270

Query: 281 RSIQSILGHFRLSTT 295
           +S+  +LGH ++STT
Sbjct: 271 KSLSEMLGHSKVSTT 285


>gi|34540845|ref|NP_905324.1| integrase [Porphyromonas gingivalis W83]
 gi|34397159|gb|AAQ66223.1| integrase [Porphyromonas gingivalis W83]
          Length = 407

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 28/50 (56%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           G+    + H  RH FAT  LS G  + S+  +LGH  + TTQ+Y  + ++
Sbjct: 335 GITKDISFHCARHGFATLALSKGMPIESVSRVLGHTNIVTTQLYAKITTE 384


>gi|330893036|gb|EGH25697.1| Phage integrase [Pseudomonas syringae pv. mori str. 301020]
          Length = 107

 Score = 42.4 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 14/103 (13%)

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K+R +PL P     I +Y +     L  + ++PLF  +RGK    G+            G
Sbjct: 2   KVRYLPLHPIAADRIHQYLESSGHHL-ADRKVPLFIPLRGKLTGAGI---------EVDG 51

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           L +    H LR + AT+ L +  D+  +Q  LGH  +STT+IY
Sbjct: 52  LGV----HGLRATAATNALEHEADIAKVQVWLGHANISTTRIY 90


>gi|325977450|ref|YP_004287166.1| tyrosine recombinase xerC [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325177378|emb|CBZ47422.1| Tyrosine recombinase xerC [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 405

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 21/173 (12%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-----------QGKGDKIRIV 200
           I  ++  + YL +  G R SE+ +L  ++I  ++S +++             KG+K  I 
Sbjct: 217 ISLKDYVLFYLTFFLGDRKSESYALQWKHINFEKSQIQLLQALDRYGDVKSTKGNKKTIF 276

Query: 201 PLLPSVRKAILEY-----YDLCPFDLNLNIQLPLF-----RGIRGKPLNPGVFQRYIRQL 250
            +   + + +  +      +L  F +  N +  +F     +G   KPL+       ++ +
Sbjct: 277 AISTDLLQLLQAWKTQQKQELAKFGIITNPEQFVFTYIDTKGNINKPLHADYLNNKMKTI 336

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           ++        T H LRH+ AT     G  L +I   L H   +TTQIY N ++
Sbjct: 337 KKRHPKLTHATPHKLRHTGATLAKQAGMSLEAISEALTHSDTATTQIYVNTSN 389


>gi|313620384|gb|EFR91787.1| phage integrase family protein [Listeria innocua FSL S4-378]
          Length = 309

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 69/146 (47%), Gaps = 13/146 (8%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-KIRIVPLLP-----SVRKAILEY 213
           + L+   GLR SEAL+LTP +    +  + I    D K+      P     S RK  +++
Sbjct: 142 ILLIIKTGLRFSEALALTPSDFDFSKQKIIINKTWDYKMVTGSFQPTKNESSNRKIQIDW 201

Query: 214 YDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
                F   +  +    P+F  ++ +  N  +  R +  L     +P + T H+LRH+ A
Sbjct: 202 QLAMQFSQLIKTKDPDKPIF--VKSRVFNSTINNR-LNVLCENANIP-TITVHSLRHTHA 257

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQ 296
           + LL  G  + S+ + LGH  ++TTQ
Sbjct: 258 SLLLFAGVSIASVANRLGHSSMTTTQ 283


>gi|291514108|emb|CBK63318.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 409

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 117/267 (43%), Gaps = 39/267 (14%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRS-LSG--IKSFLKYLKKRKITTESNILN-MR 117
           T+R+  Y   R ++++   Q+ G   L  + ++G  +++F  YLK  K   ++ ++  M+
Sbjct: 135 TVRR--YESCRRYLAELIRQRYGKEDLPLTEVNGELVRAFAFYLKTEKGCQQNTVIRYMK 192

Query: 118 NLKKSNSLPRA-------------LNEKQA----LTLVD-NVLLHTSHETKWIDARNSAI 159
            LKK  +L  A              +EK+     LT+ +   + H     + +       
Sbjct: 193 CLKKITNLACANDWMAKDPFLGIRFHEKEVVREFLTMDELQTIYHKEFPLERLTLVRDVF 252

Query: 160 LYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD 215
           ++  +  GL   +   L P++I+ D+   L I+    K +    +PLL  + + IL  Y 
Sbjct: 253 IFAAFT-GLAFIDVQQLAPEHIVRDNNGNLWIRKPRQKTKNMCNIPLL-DIPQEILRKYA 310

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
             P      + LP+       P N  +   Y++++     +  + T H  RHS+AT + L
Sbjct: 311 DHPTCRKKGVLLPV-------PCNQKM-NSYLKEIADICMIRKNLTTHCARHSYATSVCL 362

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301
            NG  L ++  +LGH  +  TQ Y  V
Sbjct: 363 VNGVSLENVAKMLGHSNIKMTQHYARV 389


>gi|254461252|ref|ZP_05074668.1| phage integrase, putative [Rhodobacterales bacterium HTCC2083]
 gi|206677841|gb|EDZ42328.1| phage integrase, putative [Rhodobacteraceae bacterium HTCC2083]
          Length = 422

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 29/51 (56%)

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           R++R    LP +   H LRHS A+H+  +G     I + LGH  +++TQ Y
Sbjct: 347 RRVREEANLPPTLGLHGLRHSLASHMAMDGASASEIMTALGHRDITSTQRY 397


>gi|111026971|ref|YP_708949.1| XerC/XerD family integrase/recombinase [Rhodococcus jostii RHA1]
 gi|110825510|gb|ABH00791.1| probable integrase/recombinase, XerC and XerD family [Rhodococcus
           jostii RHA1]
          Length = 376

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 31/70 (44%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LFR   G P+  G        L     L  S + H  RH FA++L  +G  L  IQ +LG
Sbjct: 281 LFREPLGAPMTVGAINELFEALCVRAQLARSISPHQCRHGFASNLADSGALLDEIQGLLG 340

Query: 289 HFRLSTTQIY 298
           H   S+   Y
Sbjct: 341 HASASSATPY 350


>gi|94310940|ref|YP_584150.1| phage integrase [Cupriavidus metallidurans CH34]
          Length = 188

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 15/143 (10%)

Query: 167 GLRISEALSLTPQNIMDDQSTL---RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
           GLR  E L+L   +I  + + L   R   KGD+ R VPL      A+  +  L       
Sbjct: 36  GLRRGELLALEWTDIDLEHAVLTVRRATAKGDRTRRVPLNAEALDALTRWKPLA------ 89

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRS 282
             ++ +F G  G+PL+  +   +++ LR      +S    H  RH FA+ L+  G DL +
Sbjct: 90  -HKVYVFAGEDGQPLS-EIKTAWLQVLR---DAKISNYRWHDHRHDFASQLVMRGVDLNT 144

Query: 283 IQSILGHFRLSTTQIYTNVNSKN 305
           ++ +LGH  L     Y +++ ++
Sbjct: 145 LRELLGHADLKMVLRYAHLSPEH 167


>gi|86148022|ref|ZP_01066324.1| site-specific recombinase IntIA [Vibrio sp. MED222]
 gi|85834155|gb|EAQ52311.1| site-specific recombinase IntIA [Vibrio sp. MED222]
          Length = 284

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210
           L+YG GLR+ E L L  Q+I  D  ++R+ QGKG K RIV + P +  +I
Sbjct: 129 LMYGSGLRLMECLRLRMQDIDYDYKSVRVWQGKGGKNRIVTIAPELFPSI 178


>gi|331694988|ref|YP_004331227.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326949677|gb|AEA23374.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
          Length = 446

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 75/198 (37%), Gaps = 23/198 (11%)

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           RN       PR      A+   D +     H        ++A+  L+   GLR SE   L
Sbjct: 211 RNPATDARPPRVRRRSHAIWSTDELRRFVEHARS---DHHAALWLLVCTTGLRRSELAGL 267

Query: 177 TPQN---------------IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY---YDLCP 218
              +               ++  Q+T       D  R + L P    A+ E+   +D   
Sbjct: 268 RRADLDLANGRLTSGETRVVVGGQATDSDGKSDDSRRTLALDPVTVDALREFLVRWDELK 327

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
            +   N Q  LF    G+P++P     +  +L    GLP     H +RHS+AT  L  G 
Sbjct: 328 QEFGHNGQH-LFCHPDGRPIHPDTITEWFARLSWEAGLP-PIRLHDVRHSYATAALRAGV 385

Query: 279 DLRSIQSILGHFRLSTTQ 296
            ++ +   LGH  +S TQ
Sbjct: 386 PVKVVSERLGHSSVSFTQ 403


>gi|322376560|ref|ZP_08051053.1| integrase/recombinase, phage integrase family [Streptococcus sp.
           M334]
 gi|321282367|gb|EFX59374.1| integrase/recombinase, phage integrase family [Streptococcus sp.
           M334]
          Length = 356

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 110/288 (38%), Gaps = 53/288 (18%)

Query: 58  ITIQTIRQLSYTEIRAFI----------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI 107
           I +  +  +S  ++ AFI          +    Q +   ++ R+LS + S  KYL +   
Sbjct: 66  IPLSVLENMSKKDMEAFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVE 125

Query: 108 TTESNILNMRNLKKSNSL--------PRALNEKQALTLVDNVLLHTSHETKWID------ 153
             +      RN+ K  S          RA N KQ L L D     T     +ID      
Sbjct: 126 NDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQKLFLGD----ETEGFLTYIDQEYPQQ 181

Query: 154 -------------ARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKI 197
                         R+ AI+ LL   G+R+SEA++L  +++   M      R  GK D +
Sbjct: 182 LSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMIIDVTRKGGKRDSV 241

Query: 198 RIV----PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            +     P L +      + Y     D  L   L L+RGI  + ++    ++ + +    
Sbjct: 242 NVAAFAKPYLENYLAIRNQRYKTEKTDTALF--LTLYRGIPNR-IDASSVEKMVAKYSE- 297

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               +  T H LRH+ AT L         +   LGH     T +YT++
Sbjct: 298 -DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHI 344


>gi|251772576|gb|EES53141.1| putative phage integrase [Leptospirillum ferrodiazotrophum]
          Length = 367

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 30/43 (69%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           HTLRH+ A+ L+  G D+R++Q ILGH  L+ T  Y++++  +
Sbjct: 292 HTLRHTCASRLVMAGVDIRTVQEILGHKTLAMTTRYSHLSGAH 334


>gi|170076497|ref|YP_001733136.1| phage integrase family protein [Synechococcus sp. PCC 7002]
 gi|169887359|gb|ACB01067.1| phage integrase family [Synechococcus sp. PCC 7002]
          Length = 297

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 121/296 (40%), Gaps = 42/296 (14%)

Query: 27  IER-GLSKLTLQSYECDTRQFLIFLAFYTEEKIT----------IQTIRQLSYTEIRAFI 75
           +ER GL+  T++SY   T   L  LA Y    IT          +Q +  LSYT      
Sbjct: 12  LERPGLAPSTVRSY---TTALLPLLANYGAWPITHLDRKTLQDYLQQLEHLSYT------ 62

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           + RR Q I           ++S L +  +++    +N L     +K N      +  Q +
Sbjct: 63  THRRHQAI-----------LQSLLNFAVEQQYLV-TNPLARLPQRKPNPNKGEHHSDQTI 110

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
             +    L   ++      R   ++ LL+  G RI+E LSL    +   +   ++ GKG+
Sbjct: 111 RYLTPDQLQVLYQATAQQPRLHCLVRLLHRTGARIAELLSLDYDQVDLQERRFQVVGKGN 170

Query: 196 KIRIVPLLPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ-RYIRQLR 251
           K R     P V +++   L+YY           Q PL + +            R + Q  
Sbjct: 171 KQRWCFYSPDVDESLGIYLKYYRHPEHPALFTAQQPLTKAVSRLSYRTAYSDWRTMTQRE 230

Query: 252 RYL-GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
             L GL      H LRH+FAT  +   G + ++++++GH  + TT  Y  V S+  
Sbjct: 231 PQLQGLRF----HDLRHTFATERVGLMG-IETLRALMGHENIQTTLRYQKVTSQRA 281


>gi|83596015|gb|ABC25374.1| phage integrase family domain protein [uncultured marine bacterium
           Ant29B7]
          Length = 374

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 64/154 (41%), Gaps = 15/154 (9%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL----RIQGKGDKIRIVPLLPSVR 207
            D R      L YGC LR    + L   N  ++  T+      Q KG + RIVP+   +R
Sbjct: 210 FDKRLHLCCLLAYGCLLRPHREIRLLTWNDFNEDLTMISLAGNQNKGRRNRIVPIPAYIR 269

Query: 208 K--AILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
              A L + D     ++   ++ P  RGI G      ++ RY R       L    T ++
Sbjct: 270 PFLAALRHSDYAGGANVFTGLKSPYGRGIFGD-----LWGRYKRHSNL---LEEGQTLYS 321

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            RHS A  +    G L  +Q  +GH  ++ +  Y
Sbjct: 322 FRHSGAIDIFKRTGSLTKLQKAMGHSSINVSLTY 355


>gi|26989560|ref|NP_744985.1| phage integrase family site specific recombinase [Pseudomonas
           putida KT2440]
 gi|24984438|gb|AAN68449.1|AE016478_1 site-specific recombinase, phage integrase family [Pseudomonas
           putida KT2440]
          Length = 292

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 50/242 (20%), Positives = 104/242 (42%), Gaps = 11/242 (4%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           +L    + A ++  R       S    ++ I+  +    ++ +     +L +R +K +  
Sbjct: 37  RLEPGHVIALVAALRADGFAPNSSSLYVNAIRGVMNEAWRQGLIDHEQLLRIREVKPATG 96

Query: 125 --LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             LP   N ++  +L+  ++   + + +    R++AI+ LLYG G+R SE++ +    + 
Sbjct: 97  SRLPPGRNLRR--SLIRELMDVCAADPRPQGVRDAAIIALLYGTGMRKSESVDIDLDQVD 154

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---RGIRGKPLN 239
            +  +L++ GKG+   +    P   + +  + +L   DL    +   F   R  RG  + 
Sbjct: 155 FEARSLQVVGKGNHQLVKYAPPWAFEKLQAWLELRRQDLPAGAEDDPFLFNRIRRGNHIT 214

Query: 240 PGVFQRY-IRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
                ++ I  + R  G  + +    H  R +F T ++    DL   Q +  H  + TT 
Sbjct: 215 RARITKHAIYYIARQRGAQVGVKIMPHDFRRAFITRVIEE-HDLSIAQKLAHHANIQTTA 273

Query: 297 IY 298
           IY
Sbjct: 274 IY 275


>gi|309776162|ref|ZP_07671153.1| integrase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916113|gb|EFP61862.1| integrase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 286

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 11/154 (7%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           D R   +L  + G G+R+SE   +T + + + ++ +R +GK   +  +P           
Sbjct: 125 DKRLYMLLQTICGTGIRVSEHKYITVEAVKEGKAVVRNKGKTRTV-FIPKKLKKLLK--- 180

Query: 213 YYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFA 270
             D C  +   NI    +F    G+P++     + +++L +   +       H LRH FA
Sbjct: 181 --DYCKQE---NISTGAVFITKNGRPMDRSNIWQAMKKLCQEARVDDKKVFPHNLRHLFA 235

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
                   D+  +  +LGH  + TT+IYT +  K
Sbjct: 236 LTFYRLQKDVVRLADLLGHASIETTRIYTMITGK 269


>gi|291551251|emb|CBL27513.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 409

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 94/235 (40%), Gaps = 57/235 (24%)

Query: 116 MRNLKKSNSLP----RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
           +R LKK++       RAL + +    ++ +  H  +E  W       +  ++ G GLR+ 
Sbjct: 165 LRELKKAHCFQSEKRRALTKHEQELFLNFMKTHPVYE-HWY-----PVFAVMIGTGLRVG 218

Query: 172 EALSL------TPQNIMDDQSTL-----RIQGKGD-------------KIRIVPLLPSVR 207
           E   L          ++D   TL     R +G                 +R VP+L  VR
Sbjct: 219 EVTGLRWCDIDMESGMIDVNHTLVYYDHRTEGSKSGCYFNVNTTKTLASMRQVPMLGFVR 278

Query: 208 KAILEYYDLCPFDLNLNIQLPL-------FRGIRGKPLNPGVFQRYIRQLRRYLG----- 255
           +A  E       DL L+ ++ +       F    G+  +     + IR++ R        
Sbjct: 279 EA-FEQEKQKQEDLGLHCEVTIDGYTDFIFINRFGQAQHQATLNKAIRRIIRDCNDEQFL 337

Query: 256 --------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
                   LP   + H+LRH+F T +   G +++ IQ  LGH  +STT  IY +V
Sbjct: 338 HSDEPDVLLP-HFSCHSLRHTFTTRMCEAGVNIKVIQDALGHSDISTTLNIYADV 391


>gi|170762035|ref|YP_001752228.1| integrase-recombinase protein [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|168827612|gb|ACA32874.1| integrase-recombinase protein [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
          Length = 255

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 123/305 (40%), Gaps = 68/305 (22%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +LQ+++ +R LSK T  +YE   R+F +      +E+   Q I+QL     +        
Sbjct: 5   FLQSIK-KRNLSKNTYLTYESHLRKFKV------QEQSFKQIIKQLLNNNYKP------- 50

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                +SLK + S +  + K+ K+ +   E   + +   +KS     +L++      +  
Sbjct: 51  -----KSLKLAKSILSEYWKFSKQYQYVQELEQIKLSKEQKSYKKVFSLDD------IKK 99

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            L     +TK I    + +L+     G+R  E   L   N         I GKG+K R  
Sbjct: 100 CLKINKQDTKQIKFYKTILLFYA-TTGIRAMEIYQLKQIN----NDLFVISGKGNKNR-- 152

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-- 258
                          +C  +        L+  I+ K L P       + LR+YL +    
Sbjct: 153 --------------QICYIE-------HLWNNIKNKKL-PST-----KTLRKYLKVFFDN 185

Query: 259 -STTAHTLRHSFATHLLSN------GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            + + HTLR SF T+ L++      G  L+ +Q ++GH  + TT  Y  +  +   D   
Sbjct: 186 KNVSLHTLRRSFITNFLTSNENYKRGDMLKIVQDLVGHENIQTTLQYVQITKEQVDDVYK 245

Query: 312 EIYDQ 316
           E + +
Sbjct: 246 EFFKE 250


>gi|157151597|ref|YP_001450415.1| site-specific tyrosine recombinase XerS [Streptococcus gordonii
           str. Challis substr. CH1]
 gi|189030086|sp|A8AXA5|XERS_STRGC RecName: Full=Tyrosine recombinase xerS
 gi|157076391|gb|ABV11074.1| Tyrosine recombinase xerC [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 356

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 100/266 (37%), Gaps = 38/266 (14%)

Query: 68  YTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL- 125
           Y   R  ++   TQ  +   ++ R+LS + S  KYL +     +      RN+ K  +  
Sbjct: 85  YLRERPLLNANTTQNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATK 144

Query: 126 -------PRALNEKQALTLVDNVLLHTSHETKWID-------------------ARNSAI 159
                   RA N KQ L L D     T    ++ID                    R+ AI
Sbjct: 145 KKKETLAARAENIKQKLFLGD----ETEEFLQYIDREYPKKLSNRALSSFNKNKERDLAI 200

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP- 218
           + LL   G+R+SEA++L  ++I      + +  KG K   V +    +  + EY  +   
Sbjct: 201 IALLLASGVRLSEAVNLDLKDINLKMMVIEVTRKGGKRDSVNVAAFAKPYLEEYLSIRSK 260

Query: 219 -FDLNLNIQLPLFRGIRGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
            +              RG P  ++    ++ + +        +  T H LRH+ AT L  
Sbjct: 261 RYKAEKTDTAFFLTEYRGTPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYD 318

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNV 301
                  +   LGH     T +YT++
Sbjct: 319 ATKSQVLVSHQLGHASTQVTDLYTHI 344


>gi|319902468|ref|YP_004162196.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319417499|gb|ADV44610.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 410

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 96/193 (49%), Gaps = 27/193 (13%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLT 177
           K+++  PRAL+ +++   V +V +    ++  + AR+      L+ C  G+   + +++T
Sbjct: 217 KQTDKTPRALS-RESFEKVRDVEIPEYRKSHRL-ARD----LFLFACYTGVSYIDIVTIT 270

Query: 178 PQ-NIMDDQST---LRIQGKGDKIRI-VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
            + N+  D+     L+ + K +++R  V LLP    A++E Y     D N +   P+   
Sbjct: 271 AKDNLFTDEDGALWLKYRRKKNELRASVKLLPEA-IALIEKYR----DENRDTLFPMMH- 324

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFR 291
                 +P + +R+++ L     +      H  RHSFA+ + L  G  + +I  +LGH  
Sbjct: 325 ------HPNL-KRHMKALAALAEIKDDLCYHQARHSFASLITLEAGVPIETISRMLGHSN 377

Query: 292 LSTTQIYTNVNSK 304
           ++TTQ+Y  V+ K
Sbjct: 378 ITTTQVYARVSPK 390


>gi|315608519|ref|ZP_07883505.1| possible tyrosine type site-specific recombinase [Prevotella buccae
           ATCC 33574]
 gi|315249791|gb|EFU29794.1| possible tyrosine type site-specific recombinase [Prevotella buccae
           ATCC 33574]
          Length = 423

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 67/147 (45%), Gaps = 28/147 (19%)

Query: 167 GLRISEALSLTPQNIM---DDQSTLRIQGKGDKIR-IVPLLPSVRKAILEYY------DL 216
           GL   +   L P++I+   D    +RI+ +   +  I+PLLP + K IL  Y      D 
Sbjct: 257 GLARVDMQRLKPKHIIHNADGTEEIRIKRQKTNVEAIIPLLP-IAKQILSLYIKDKKADE 315

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LS 275
             F  NL I+   F  +     N G   R  + L          T H  RH+F+T + LS
Sbjct: 316 LIFP-NLTIRKASFACV-----NIGQICRIEKGL----------TFHMARHTFSTTICLS 359

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVN 302
           NG  + ++  +LGH  + TTQIY  + 
Sbjct: 360 NGISMETLSKMLGHSNIGTTQIYGKIT 386


>gi|313123990|ref|YP_004034249.1| integrase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280553|gb|ADQ61272.1| Putative integrase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 370

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 64/155 (41%), Gaps = 14/155 (9%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQS----TLRIQG-KGDKIRIVP-----LLPSVRKAIL 211
            +Y  G+R  EA  L  +NI D  +    T+   G K D  + +       LP     I+
Sbjct: 204 FMYLTGMRFGEATGLQFKNIHDQYADITGTMWANGIKSDSPKTLASFRSVFLPKQAVEII 263

Query: 212 EYYDLCPFDLNLNIQLPLF-RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           +++    +D N      +F   ++  P        Y++   R  G+    T H  RH+  
Sbjct: 264 KWFK--QYDRNTEPDDFIFINQLKHVPFKMNTVALYLKNKSREAGIDRKITTHFFRHTHI 321

Query: 271 THLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
           + L   G  L  IQ  +GH +  TT +IY +V  K
Sbjct: 322 SKLAEQGVPLHVIQKRVGHTKAETTREIYLHVTKK 356


>gi|295100102|emb|CBK89191.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87]
          Length = 397

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 85/197 (43%), Gaps = 39/197 (19%)

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD---- 183
           AL E+Q L L+  +     +   + D      + +L   GLRISE   LT   IMD    
Sbjct: 190 ALTEEQELALLSFIKTDNVYHKYYDD------VLILLKTGLRISELCGLT---IMDVDFI 240

Query: 184 ------DQSTLRIQGKGDKI---------RIVPL----LPSVRKAILEYYDLCPFDLNLN 224
                 D   L+ + +G  I         R VPL    + + ++ + +     PF ++  
Sbjct: 241 HEVVVIDHQLLKSKEQGYYIETPKTKSGTRQVPLSKETIQAFQRVMKKRPKAEPFVIDGR 300

Query: 225 IQLPLFRGIRGKPLNPGVFQR-YIRQLRRY----LGLPLS-TTAHTLRHSFATHLLSNGG 278
               LF   +GKP     +   ++R +++Y       PL   T HTLRH+F T L S   
Sbjct: 301 GNF-LFVNQKGKPKVAIDYNMLFVRMVKKYNKHHKDNPLPHITPHTLRHTFCTRLASKNM 359

Query: 279 DLRSIQSILGHFRLSTT 295
           + + +Q I+GH  +S T
Sbjct: 360 NPKDLQYIMGHSNISIT 376


>gi|260361955|ref|ZP_05774960.1| phage integrase family protein [Vibrio parahaemolyticus K5030]
 gi|308114176|gb|EFO51716.1| phage integrase family protein [Vibrio parahaemolyticus K5030]
          Length = 394

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 28/47 (59%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           G+    T H  RH+FA   LS G D+ ++  +LGH  L TT+IY ++
Sbjct: 323 GISKHVTFHAGRHTFAVIQLSRGIDIYAVSKLLGHSELKTTEIYADI 369


>gi|260171160|ref|ZP_05757572.1| transposase [Bacteroides sp. D2]
 gi|315919477|ref|ZP_07915717.1| transposase [Bacteroides sp. D2]
 gi|313693352|gb|EFS30187.1| transposase [Bacteroides sp. D2]
          Length = 410

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 2/65 (3%)

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV-NS 303
           Y++++    G+  + T H  RH+FAT   L+ G  + ++  +LGH  + TTQIY  + N+
Sbjct: 325 YLKEIADVCGIKKNLTFHLARHTFATTTTLAKGVPVETVSKMLGHTNIETTQIYARITNN 384

Query: 304 KNGGD 308
           K   D
Sbjct: 385 KISND 389


>gi|154250786|ref|YP_001411610.1| integrase family protein [Parvibaculum lavamentivorans DS-1]
 gi|154154736|gb|ABS61953.1| integrase family protein [Parvibaculum lavamentivorans DS-1]
          Length = 193

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 66/155 (42%), Gaps = 27/155 (17%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----KGDKIRIVPLLPSVRKAILEYYD 215
           L L Y  G RISE L+LTP+ +  D   + I+     +G   R +P    V +A+L    
Sbjct: 36  LVLTY-TGARISEILALTPERVDVDAGVVIIESLKKRRGGVFRSIP----VPRALLR--- 87

Query: 216 LCPFDLN----LNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLS-TTAHTLR 266
               DLN    L+   P  R  RG+     +       +++Q     G+  S      LR
Sbjct: 88  ----DLNEIHELSRARP--RTTRGENRVWRIGRTTAWSWVKQAMESAGIVGSHAMPKALR 141

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H+F          L  +Q  LGH RLSTT IY + 
Sbjct: 142 HAFGIEATQRNVPLSVVQKWLGHSRLSTTAIYVDA 176


>gi|13357702|ref|NP_077976.1| integrase-recombinase protein [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|11356971|pir||B82927 integrase-recombinase protein UU145 [imported] - Ureaplasma
           urealyticum
 gi|6899105|gb|AAF30551.1|AE002115_3 integrase-recombinase protein [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
          Length = 260

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 127/313 (40%), Gaps = 72/313 (23%)

Query: 17  ERQN----WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ERQ+    +LQ+++ +R LSK T  +YE   R+F +      +E+   Q I+QL     +
Sbjct: 2   ERQSMINKFLQSIK-KRNLSKNTYLTYESHLRKFKV------QEQSFKQIIKQLLNNNYK 54

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
                        +SLK + S +  + K+ K+ +   E   + +   +KS     +L++ 
Sbjct: 55  P------------KSLKLAKSILSEYWKFSKQYQYVQELEQIKLSKEQKSYKKVFSLDD- 101

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
                +   L     +TK I    + +L+     G+R  E   L   N         I G
Sbjct: 102 -----IKKCLKINKQDTKQIKFYKTILLFYA-TTGIRAMEIYQLKQIN----NDLFVISG 151

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG+K R                 +C  +        L+  I+ K L P       + LR+
Sbjct: 152 KGNKNR----------------QICYIE-------HLWNNIKNKKL-PST-----KTLRK 182

Query: 253 YLGLPL---STTAHTLRHSFATHLLSN------GGDLRSIQSILGHFRLSTTQIYTNVNS 303
           YL +     + + HTLR SF T+ L++      G  L+ +Q ++GH  + TT  Y  +  
Sbjct: 183 YLKVFFDNKNVSLHTLRRSFITNFLTSNENYKRGDMLKIVQDLVGHENIQTTLQYVQITK 242

Query: 304 KNGGDWMMEIYDQ 316
           +   D   E + +
Sbjct: 243 EQVDDVYKEFFKE 255


>gi|150017497|ref|YP_001309751.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149903962|gb|ABR34795.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 325

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           GK + P   +  ++ L +   +  +   H LRH+ AT LL NG  +++IQ  LGH  +ST
Sbjct: 239 GKFMVPNDVRDRLKYLLKRNKIDKNIRWHDLRHTSATLLLENGVAMKTIQKRLGHASMST 298

Query: 295 T-QIYTNVNSK 304
           T  IY++V  K
Sbjct: 299 TSDIYSHVTEK 309


>gi|313633632|gb|EFS00394.1| gp43 [Listeria seeligeri FSL N1-067]
          Length = 314

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 13/147 (8%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-----KIRIVPLLPSVRKAILEYYDL 216
           L+   G+R +EAL++TP +      T+ I    D            L SVR   +++  +
Sbjct: 143 LVAKTGMRYAEALAITPADFDWTAQTISINKTWDYKYNKGFAKTKTLSSVRTIKIDWQIV 202

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQR-YIRQLRRYLGLPLSTTA------HTLRHSF 269
             F   L   LP    I  +    G ++R +   +  +L      T       H LRH+ 
Sbjct: 203 GQFK-PLIKDLPENEPIFVEKFEDGTYKRQFNSTINNFLAAKCKETGITQISFHALRHTH 261

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           A+ LL+ G  + +I S LGH  +  TQ
Sbjct: 262 ASVLLAEGVSIHTISSRLGHADVGVTQ 288


>gi|226325969|ref|ZP_03801487.1| hypothetical protein COPCOM_03782 [Coprococcus comes ATCC 27758]
 gi|225205511|gb|EEG87865.1| hypothetical protein COPCOM_03782 [Coprococcus comes ATCC 27758]
          Length = 373

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 94/226 (41%), Gaps = 29/226 (12%)

Query: 112 NILNMRNLKKSNSLPRALN---EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
           N L  RN  K   LPR      E+ A+T     L     E  ++    S +L      G+
Sbjct: 149 NGLIERNPVKLAELPRQTGTKKERTAMTKEQQDLFMKYAEESYLYHFFSVMLR----TGM 204

Query: 169 RISEALSLT------PQNIMDDQSTLR-IQGKG---------DKIRIVPLLPSVRKAILE 212
           R  E   L        QN++  + TL+ I+GKG            R +PL  ++ + I  
Sbjct: 205 RKGEMQGLKYSDIDKKQNVIHVRRTLKYIEGKGYFEDTPKTRTSTRDIPLTAAITEHIEA 264

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLN----PGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
                 F + + +   LF    G P++     G   R I++++         T+H  RH+
Sbjct: 265 QRKYWGFKV-VRMDQYLFCNENGDPISRERIQGEIDRIIKRIKSDGYDFPRITSHVFRHT 323

Query: 269 FATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDWMMEI 313
           FAT  +  G   + +++ILGH  L+ T  +Y++V      D M +I
Sbjct: 324 FATRAIEAGMPPQVLKTILGHSSLAMTMDLYSHVLPDTKADEMQKI 369


>gi|195963186|emb|CAQ43011.1| transposase B [Staphylococcus aureus]
          Length = 630

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 114/282 (40%), Gaps = 32/282 (11%)

Query: 38  SYECDTRQFLI-FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS--- 93
           SY  D  Q L  F  F   +   +Q + QL+  E  A++S+     I   ++   +S   
Sbjct: 236 SYVSDIAQRLKEFFNFLDMKFKQVQRVHQLTRVENEAYLSELNMMGIKPSTITGRISILE 295

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
           G+ S L  L+   + ++  I +    K   + PR ++E     +++ +  H     ++I 
Sbjct: 296 GLFSTLLRLEWDDVPSKILIYSEDYPKIPRAKPRFIDE----FVLEQLNSHLDKLPEYI- 350

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPSVRKA 209
              + +  ++  CG+RISE  +L    +++D+         Q K  K  IVP+   V   
Sbjct: 351 ---ATMTMIVQECGMRISELCTLKKGCLLEDKDGDFFLKYYQWKMKKEHIVPISKEVALL 407

Query: 210 ILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQ------RYIRQLRRYLGLPLS 259
           I    D       ++ + P    LF    G PL    F+       Y + +    G    
Sbjct: 408 IKVRED------KVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKSGEIYR 461

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             AH  RH+  T +++NG     +Q  LGH     T  Y ++
Sbjct: 462 FHAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHI 503


>gi|167767979|ref|ZP_02440032.1| hypothetical protein CLOSS21_02522 [Clostridium sp. SS2/1]
 gi|167710308|gb|EDS20887.1| hypothetical protein CLOSS21_02522 [Clostridium sp. SS2/1]
          Length = 372

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 72/153 (47%), Gaps = 6/153 (3%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           D R+ A++ +L   G R+SE  +++  ++   +  +RI GKGDK R V +  +    +  
Sbjct: 214 DIRDRALIEMLACTGCRVSELSNISLNDVDFLRKKVRIVGKGDKERTVFISDTAMIYLNR 273

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           Y +      + NI L + +      L     +R +R L R     +    H  R +  T+
Sbjct: 274 YLETRQ---DNNIALFVSKRFPYDRLRKDGIERVVRDLGRMCN--VYAHPHKFRRTLCTN 328

Query: 273 LLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSK 304
           L+  G  L+++  ++GH  ++ T  +Y + + +
Sbjct: 329 LIMRGMPLQNVAILMGHADINMTANVYYDASDR 361


>gi|13095806|ref|NP_076696.1| integrase [Lactococcus phage bIL309]
 gi|15672418|ref|NP_266592.1| integrase [Lactococcus lactis subsp. lactis Il1403]
 gi|12723313|gb|AAK04534.1|AE006280_10 prophage pi1 protein 01, integrase [Lactococcus lactis subsp.
           lactis Il1403]
 gi|12830995|gb|AAK08349.1|AF323670_1 integrase [Lactococcus phage bIL309]
          Length = 377

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 74/173 (42%), Gaps = 36/173 (20%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-------------KIRIVPL 202
           +S ++Y+    G+R SE L LT  N+  ++  + ++   D              +R + +
Sbjct: 192 SSFMIYIAAMTGMRFSELLGLTWDNVDFEKGQIYVKRTWDIYKNNFAPTKNDQSVRFLAI 251

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF-------------QRYIRQ 249
             S  + ++ Y +          Q  L + +  +P +P VF              + +R 
Sbjct: 252 DSSTMQVMINYKEQ---------QEKLLKRLEIEPEHPFVFYNIKNGLITNNSLNKQLRN 302

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           + + LG     T H LRH+ A+ +L  G ++  +   LGH  L+ T  +Y+++
Sbjct: 303 MCKKLGFKKIITCHGLRHTHASTMLYKGINILYVSKRLGHSSLNVTMSVYSHI 355


>gi|304384354|ref|ZP_07366765.1| integrase [Prevotella marshii DSM 16973]
 gi|304334670|gb|EFM00952.1| integrase [Prevotella marshii DSM 16973]
          Length = 448

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           ++ + +  G+    T H  RH+ AT + LSNG  + S+ S+LGH  +++TQIY  + ++ 
Sbjct: 365 LKTIIKKCGIDKHVTWHVARHTMATVVCLSNGMPIESVSSLLGHKCITSTQIYAKITNEK 424

Query: 306 GG 307
            G
Sbjct: 425 LG 426


>gi|237729903|ref|ZP_04560384.1| phage integrase [Citrobacter sp. 30_2]
 gi|226908509|gb|EEH94427.1| phage integrase [Citrobacter sp. 30_2]
          Length = 284

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 98/214 (45%), Gaps = 18/214 (8%)

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R L+ +K+   +  +      S    ++  ++  SL RA+ E +  ++   VL     E 
Sbjct: 66  RHLALLKAVFSWAVEYNYLEVSPAAGIKAFREPASLRRAM-EPEEFSVFIRVL---KAEI 121

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL--RIQGKGDKIRIVPLLPSVR 207
           K  +     +L LL   G+R+ EA S   +++   ++TL  R    GD  R+VPL     
Sbjct: 122 KDENRDTLQLLGLLAFTGMRLGEARSACIEDLNLTRNTLFLRDTKSGDS-RLVPLCGEAM 180

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           + +      C   +    Q  LFR   G K   P   +R ++++    G+ +  T H LR
Sbjct: 181 EIV------CAQLMKHGNQGLLFRSAHGTKVAEP---RRLMKKICEKAGI-VPFTIHELR 230

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           ++  + +L+   DL +++  LGH  LST++ Y N
Sbjct: 231 YTAGSAMLAATRDLYAVKRFLGHKCLSTSERYAN 264


>gi|185178975|ref|ZP_02964732.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188524422|ref|ZP_03004442.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|184209257|gb|EDU06300.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|195659973|gb|EDX53353.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
          Length = 255

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 123/305 (40%), Gaps = 68/305 (22%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +LQ+++ +R LSK T  +YE   R+F +      +E+   Q I+QL     +        
Sbjct: 5   FLQSIK-KRNLSKNTYLTYESHLRKFKV------QEQSFKQIIKQLLNNNYKP------- 50

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                +SLK + S +  + K+ K+ +   E   + +   +KS     +L++      +  
Sbjct: 51  -----KSLKLAKSILSEYWKFSKQYQYVQELEQIKLSKEQKSYKKVFSLDD------IKK 99

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            L     +TK I    + +L+     G+R  E   L   N         I GKG+K R  
Sbjct: 100 CLKINKQDTKQIKFYKTILLFYA-TTGIRAMEIYQLKQIN----NDLFVISGKGNKNR-- 152

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-- 258
                          +C  +        L+  I+ K L P       + LR+YL +    
Sbjct: 153 --------------QICYIE-------HLWNNIKNKKL-PST-----KTLRKYLKVFFDN 185

Query: 259 -STTAHTLRHSFATHLLSN------GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            + + HTLR SF T+ L++      G  L+ +Q ++GH  + TT  Y  +  +   D   
Sbjct: 186 KNVSLHTLRRSFITNFLTSNDNYKRGDMLKIVQDLVGHENIQTTLQYVQITKEQVDDVYK 245

Query: 312 EIYDQ 316
           E + +
Sbjct: 246 EFFKE 250


>gi|167754453|ref|ZP_02426580.1| hypothetical protein ALIPUT_02748 [Alistipes putredinis DSM 17216]
 gi|167659078|gb|EDS03208.1| hypothetical protein ALIPUT_02748 [Alistipes putredinis DSM 17216]
          Length = 410

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 35/68 (51%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           RY++ +  +L LP++ T +  RHSFAT L  +G     I   LGH     TQIY +    
Sbjct: 340 RYLKLIGEHLHLPITLTTYVARHSFATVLKRSGVSTSIISESLGHSSEKITQIYLDSFEN 399

Query: 305 NGGDWMME 312
           +  D  M+
Sbjct: 400 SQIDAAMQ 407


>gi|261367487|ref|ZP_05980370.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Subdoligranulum variabile DSM 15176]
 gi|282570264|gb|EFB75799.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Subdoligranulum variabile DSM 15176]
          Length = 427

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 8/84 (9%)

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS-NGG 278
           D +L + LP      G+P    +  +   +LR   GLP     H+LRHS  T+ L  N G
Sbjct: 281 DYDLVVALP-----NGRPCEDRIILKEFEKLREKAGLP-RVVFHSLRHSSTTYKLKLNHG 334

Query: 279 DLRSIQSILGHFRLST-TQIYTNV 301
           DL++ Q   GH  +   T +Y ++
Sbjct: 335 DLKATQGDTGHAEIDMITSVYAHI 358


>gi|221369889|ref|YP_002520985.1| Phage integrase [Rhodobacter sphaeroides KD131]
 gi|221162941|gb|ACM03912.1| Phage integrase [Rhodobacter sphaeroides KD131]
          Length = 434

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 26/39 (66%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H LRH+FA+ L+S G  L  I  +LGH ++ TTQ Y ++
Sbjct: 357 HDLRHTFASLLVSGGASLEMIGKLLGHTQMQTTQRYAHL 395


>gi|109898162|ref|YP_661417.1| integron integrase [Pseudoalteromonas atlantica T6c]
 gi|109700443|gb|ABG40363.1| integron integrase [Pseudoalteromonas atlantica T6c]
          Length = 279

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 71/162 (43%), Gaps = 38/162 (23%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206
           + A+    + +LY  GLR+ E + L  Q+I  D  ++R+  G+G K RIV     L+PS+
Sbjct: 106 VSAQQKLAVSILYANGLRLMECVRLRVQDIDFDFKSVRVWNGEGGKHRIVTLADELIPSL 165

Query: 207 RKAIL---EYYD-----------LCPFDL-----NLNIQLP---LF-----------RGI 233
           ++ I    +Y D             P  L     N N  LP   +F           + +
Sbjct: 166 QQQITVVRQYLDADLLNPEYDGVYLPHRLRLKFKNANRSLPWQYVFASRQLSTDPEDQSL 225

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
           R   ++    Q+ IR   +   +P   T HTLRHSF   +L+
Sbjct: 226 RRHHIDGSTVQKVIRHAAKKANIPKIVTPHTLRHSFKKCVLA 267


>gi|317475990|ref|ZP_07935245.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316907922|gb|EFV29621.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 410

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYT 299
           G   + ++ + R  G  +  T H  RH+ AT  LLS+G  + ++  +LGH  + TTQIY 
Sbjct: 322 GSCNKILKDIGRQCGFKVRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYA 381

Query: 300 NVNSK 304
            + ++
Sbjct: 382 KITAQ 386


>gi|229140584|ref|ZP_04269139.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST26]
 gi|228643145|gb|EEK99421.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST26]
          Length = 322

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 126/298 (42%), Gaps = 31/298 (10%)

Query: 16  KERQNWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEEK----ITIQTIRQLSY 68
           +E +N +++  IE+   G +  TLQ Y  D R  L  L  + E K    +T + IR LS 
Sbjct: 19  QENKNLVKDFLIEKKSQGKAASTLQQYHWDLRIILFLLHQHFENKNLIELTRKDIRNLSI 78

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILN-MRNLKKSNSLP 126
                 +S  R   +        +S ++S L++         E N+ + +R L K+    
Sbjct: 79  IFQELGMSNARVNGL--------MSALRSALEFCADDDDYDYEFNVGSRVRGLPKNPVRE 130

Query: 127 -RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
              + E+Q   L+D +L     + K++ A     L L Y    R +E   +  + + +  
Sbjct: 131 ITFITEEQIEWLIDELL----EQEKYMLA---TYLALSYYSAARKNEVYQVQKEELTERY 183

Query: 186 STLRIQGK-GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
            T  ++GK G K R+    P V+K I  Y +    D   ++ + +++    K LN   F 
Sbjct: 184 FTNVVRGKRGKKFRLY-YNPRVQKCIRLYIEQRGKDTIPDLFVRVYKNGERKLLNKSAFN 242

Query: 245 RYIRQLRRYL----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            + +   + L    G       H  RHS   +L   G  L  ++S+  H  +STTQ Y
Sbjct: 243 YWCKIFAKMLCEKEGKEYKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSY 300


>gi|21283668|ref|NP_646756.1| integrase [Staphylococcus aureus subsp. aureus MW2]
 gi|300912911|ref|ZP_07130349.1| integrase [Staphylococcus aureus subsp. aureus TCH70]
 gi|21205109|dbj|BAB95804.1| integrase [Staphylococcus aureus subsp. aureus MW2]
 gi|300885689|gb|EFK80896.1| integrase [Staphylococcus aureus subsp. aureus TCH70]
          Length = 345

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 73/148 (49%), Gaps = 5/148 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+S  L+++   G R+S A ++  ++I   ++T+ I  +  K    P   S+ K+ +++ 
Sbjct: 183 RSSLALFIMICTGCRVSGARNIKTEHINQVKNTIFIDER--KTDTSPRYISIAKSDMKHI 240

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                   ++    +F+   G  +N       ++   R   +P+  T+H LRH+  ++LL
Sbjct: 241 MDVISTFAISYDGYIFKEA-GSIINLQAINNALKSACRVNNIPI-ITSHALRHTHCSYLL 298

Query: 275 SNGGDLRSIQSILGHFRLS-TTQIYTNV 301
           + G  +  I   LGH  ++ TT +Y+++
Sbjct: 299 AKGVSIHYISKRLGHKNIAITTSVYSHL 326


>gi|320328420|gb|EFW84422.1| cointegrase [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 323

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 27/173 (15%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRI-QGKGDK--IRIVPLLPSVRK 208
           R+ A+L + +  G R  E   L  +++  +     TL + Q KGD+  +      P++++
Sbjct: 137 RDMALLLIGFWRGFRSDELCRLQVEHVQVEAGAGMTLFLPQSKGDRENLGTTHYAPALKR 196

Query: 209 AILEYYDLCPFDLNLNI-------------QLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
                  LCP    L+              +L  +  +  K L+PG     +RQ+ +  G
Sbjct: 197 -------LCPVQAYLDWISVAGMARGAVFRRLDRWGHLNEKALHPGSLISLLRQILQRAG 249

Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +P    T+H+LR  FAT   +NG DL+++ + +G   + +   Y +     GG
Sbjct: 250 IPAELYTSHSLRRGFATWATANGWDLKALMTYVGWKDIKSAMRYIDPAISFGG 302


>gi|331652974|ref|ZP_08353979.1| putative phage integrase [Escherichia coli M718]
 gi|331049072|gb|EGI21144.1| putative phage integrase [Escherichia coli M718]
          Length = 528

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 71/169 (42%), Gaps = 32/169 (18%)

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRIQGKGD----- 195
           HT+H T   +AR  A L  +   G R +E   LT ++++   +    + I   GD     
Sbjct: 353 HTAHTTS--EARRWASLVSVV-TGARSAEVCHLTKRDVVTLDNGLVCIDINEDGDGKSVK 409

Query: 196 ---KIRIVPLLPSVR----KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI- 247
               +R+VPL         K+ LE+ D+ P       + PLF       + P  +  +  
Sbjct: 410 NKHSVRLVPLTDGACGLDLKSFLEWVDMQP------DEGPLF------GMTPSAYSSWFN 457

Query: 248 -RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            R L   L    + + H+LRH  AT +   G +L   Q ILGH   S T
Sbjct: 458 SRVLTEALPDAENVSLHSLRHWLATRMKERGVNLVDAQGILGHSSQSIT 506


>gi|331004726|ref|ZP_08328179.1| hypothetical protein HMPREF0491_03041 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330408983|gb|EGG88443.1| hypothetical protein HMPREF0491_03041 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 404

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 17/160 (10%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210
           I  R+ A++ L    G+R  + ++L    I      +RI Q K +K   +PL   V  A 
Sbjct: 233 IGKRDYAVIILATVTGMRSVDIINLQLTAIDWINGEIRIIQSKTEKALALPLTKDVGMAF 292

Query: 211 LEYY-------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
            +Y        DL PF + L+ + P   G  G  L   +F  Y    R  +GLP   T H
Sbjct: 293 QDYIMNGRPNSDL-PF-VFLHGRAPY--GKMGHTLPYQIFNSY----RLKIGLP-KCTFH 343

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            LR +  T+++  G  + ++  +LGH R+  T+ Y +++S
Sbjct: 344 GLRRAVGTNMVIAGIPVTTVSQVLGHSRIDPTKQYISLDS 383


>gi|313113287|ref|ZP_07798893.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
 gi|310624397|gb|EFQ07746.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
          Length = 305

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 15/148 (10%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY 213
           ++ L+   G+R SEAL++TP +       L I    D       LP     SVRK  +++
Sbjct: 137 MILLIAKTGIRFSEALAITPADFDFSHQMLSINKTWDYKGNGGFLPTKNKSSVRKIQIDW 196

Query: 214 YDLCPF-----DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
             +  F     D+  +  + +F+          V +R+  + +    +P+  + H LRH+
Sbjct: 197 QTVIQFAALVKDVPEDKPIFVFKEHAYNSTVNDVLERHCDRAK----IPV-ISVHGLRHT 251

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 252 HASVLLFAGVSIASVARRLGHSSMTTTQ 279


>gi|288925201|ref|ZP_06419136.1| integrase [Prevotella buccae D17]
 gi|288337966|gb|EFC76317.1| integrase [Prevotella buccae D17]
          Length = 407

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 28/50 (56%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           G+    + H  RH FAT  LS G  + S+  +LGH  + TTQ+Y  + ++
Sbjct: 335 GITKDISFHCARHGFATLALSKGMPIESVSRVLGHTNIVTTQLYAKITTE 384


>gi|262282304|ref|ZP_06060072.1| tyrosine recombinase xerC [Streptococcus sp. 2_1_36FAA]
 gi|262261595|gb|EEY80293.1| tyrosine recombinase xerC [Streptococcus sp. 2_1_36FAA]
          Length = 356

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 106/277 (38%), Gaps = 43/277 (15%)

Query: 68  YTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL- 125
           Y   R  ++   TQ  +   ++ R+LS + S  KYL +     +      RN+ K  +  
Sbjct: 85  YLRERPLLNANTTQNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATK 144

Query: 126 -------PRALNEKQALTLVDNVLLHTSHETKWIDA-------------------RNSAI 159
                   RA N KQ L L D     T    ++ID                    R+ AI
Sbjct: 145 KKKETLAARAENIKQKLFLGD----ETEEFLQYIDTEYPKKLSNRALSSFNKNKERDLAI 200

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL--- 216
           + LL   G+R+SEA++L  ++I      + +  KG K   V +    +  + +Y  +   
Sbjct: 201 IALLLASGVRLSEAVNLDLKDINLKMMVIEVTRKGGKRDSVNVAAFAKPYLEDYLSIRSK 260

Query: 217 --CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                  +    L  +RGI  + ++    ++ + +        +  T H LRH+ AT L 
Sbjct: 261 RYKAEKTDTAFFLTEYRGIPNR-IDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLY 317

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGD 308
                   +   LGH     T +YT++     KN  D
Sbjct: 318 DATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|157325260|ref|YP_001468682.1| gp43 [Listeria phage B025]
 gi|66733266|gb|AAY53083.1| gp43 [Listeria phage B025]
          Length = 314

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 13/147 (8%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-----KIRIVPLLPSVRKAILEYYDL 216
           L+   G+R +EAL++TP +      T+ I    D            L SVR   +++  +
Sbjct: 143 LVAKTGMRYAEALAITPADFNWTAQTISINKTWDYKYNKGFAKTKTLSSVRTIKIDWQIV 202

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQR-YIRQLRRYLGLPLSTTA------HTLRHSF 269
             F   L   LP    I  +    G ++R +   +  +L      T       H LRH+ 
Sbjct: 203 GQFK-QLIKDLPENEPIFVEKFGDGTYKRQFNSTINNFLAAKCKETGITQISFHALRHTH 261

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           A+ LL+ G  + +I + LGH  +  TQ
Sbjct: 262 ASVLLAEGVSIHTISARLGHADVGVTQ 288


>gi|224026709|ref|ZP_03645075.1| hypothetical protein BACCOPRO_03466 [Bacteroides coprophilus DSM
           18228]
 gi|224019945|gb|EEF77943.1| hypothetical protein BACCOPRO_03466 [Bacteroides coprophilus DSM
           18228]
          Length = 319

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYT 299
           G   + ++++ R  G  +  T H  RH+ AT  LLS+G  + ++  +LGH  + TTQIY 
Sbjct: 240 GSCNKILKEIGRQCGFKVRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYA 299

Query: 300 NVNSK 304
            + ++
Sbjct: 300 KITAQ 304


>gi|306825199|ref|ZP_07458541.1| site-specific tyrosine recombinase XerS [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|304432635|gb|EFM35609.1| site-specific tyrosine recombinase XerS [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
          Length = 356

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 105/264 (39%), Gaps = 44/264 (16%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--------PRALNEK 132
           Q +   ++ R+LS + S  KYL +     +      RN+ K  S          RA N K
Sbjct: 99  QGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIK 158

Query: 133 QALTLVD------------------NVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           Q L L D                  N  L + ++ K    R+ AI+ LL   G+R+SEA+
Sbjct: 159 QKLFLGDETEGFLYYIDQEYPKTLSNRALSSFNKNK---ERDLAIIALLLASGVRLSEAV 215

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-------L 227
           +L  +++      + +  KG K   V +  +  K  LE Y L   D     +       L
Sbjct: 216 NLDLRDLNLKMMVIDVTRKGGKRDSVNV-AAFAKPYLEQY-LAIRDKRYKTEKTDTALFL 273

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
            L+RG+  + ++    ++ + +        +  T H LRH+ AT L         +   L
Sbjct: 274 TLYRGVPNR-IDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNV---NSKNGGD 308
           GH     T +YT++     KN  D
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNALD 354


>gi|291514360|emb|CBK63570.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 368

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 31/155 (20%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI---VPL-------LPSVRKA 209
            L+ C  GLRIS+   L  + ++   +   I  +  K +I   VPL       LPS R+ 
Sbjct: 220 FLFCCFTGLRISDVQKLIWKEVVTTNNETYINFRQKKTKIENYVPLSENAISVLPSKREN 279

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
                     + +    LP    IR       V ++++       G+    T H  RH+ 
Sbjct: 280 T---------ETDSVFDLPKESTIRK------VLKKWVSDS----GIDKHITFHCARHTC 320

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           AT LL++G D+ +++ ILGH  + TT  Y  V  K
Sbjct: 321 ATLLLNSGVDIYTVKEILGHTDIGTTMQYAKVVDK 355


>gi|83582746|ref|YP_425052.1| Phage integrase [Rhodospirillum rubrum ATCC 11170]
 gi|83578062|gb|ABC24612.1| Phage integrase [Rhodospirillum rubrum ATCC 11170]
          Length = 207

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 16/160 (10%)

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           L  +D ++    H  +  D R++ ++ L Y  GLR+SE + L  + +   Q  L ++ + 
Sbjct: 20  LAEIDRLIAAAQHLGRH-DQRDATMILLAYRHGLRVSELVELRREQVDLRQGLLHVRRRK 78

Query: 195 DKIRIV-----PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + +        P L ++ K + EY +      N  +    F   RG P+    F++ + +
Sbjct: 79  NGLPSTHPLRGPELRALNKLLREYPE------NAYV----FVSERGAPMTAATFRKLLAR 128

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
                 L +    H LRHS    L ++G D R+IQ  L H
Sbjct: 129 AGDAAKLGMPIHPHMLRHSTGFKLANDGQDTRAIQLYLWH 168


>gi|322690727|ref|YP_004220297.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320455583|dbj|BAJ66205.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 379

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +F    G PLN  +  R  ++    +GLP     H+ RH+ AT +   G   +  +SI+G
Sbjct: 273 VFVQADGTPLNRMIETRAWKKALNRVGLPDDYVPHSARHTAATAMAQLGMSDKVRESIMG 332

Query: 289 HFRLSTT-QIYTNVNSKNG 306
           H  +S T ++YT+V + + 
Sbjct: 333 HSDISVTNRVYTHVGTADA 351


>gi|256961377|ref|ZP_05565548.1| prophage ps2 protein 01 [Enterococcus faecalis Merz96]
 gi|293387222|ref|ZP_06631780.1| prophage LambdaSa03, site-specific recombinase, phage integrase
           family [Enterococcus faecalis S613]
 gi|256951873|gb|EEU68505.1| prophage ps2 protein 01 [Enterococcus faecalis Merz96]
 gi|291083360|gb|EFE20323.1| prophage LambdaSa03, site-specific recombinase, phage integrase
           family [Enterococcus faecalis S613]
          Length = 378

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 20/163 (12%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-------KIRIVP-LLPSVRKAILEY 213
            +Y  GLR  EA+SLT  + + ++  + + G  D         + +P  L S RK  L  
Sbjct: 202 FMYLTGLRAGEAISLTINDYVKNEHAILVNGTLDYSNGYKNATKELPKTLASFRKVELSN 261

Query: 214 YDLCPFD---LNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLG---LPLSTTA 262
             +   +   L   I+       LF G  G+P+    F   +++    LG   +  + ++
Sbjct: 262 RAVKIIEELILEREIKFKEQTNYLFVGKTGRPIQVNSFNASLKKANESLGKNKINKTISS 321

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
           H  RHS  + L      +++I   +GH    TT +IYT+V  K
Sbjct: 322 HIFRHSHISLLAELNVPVKAIMERVGHVDTETTLKIYTHVTKK 364


>gi|169834019|ref|YP_001694598.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           Hungary19A-6]
 gi|229892079|sp|B1IBW3|XERS_STRPI RecName: Full=Tyrosine recombinase xerS
 gi|168996521|gb|ACA37133.1| tyrosine recombinase XerC [Streptococcus pneumoniae Hungary19A-6]
          Length = 356

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 99/255 (38%), Gaps = 43/255 (16%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--------PRALNEK 132
           Q +   ++ R+LS + S  KYL +     +      RN+ K  S          RA N K
Sbjct: 99  QGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIK 158

Query: 133 QALTLVDNVLLHTSHETKWID-------------------ARNSAILYLLYGCGLRISEA 173
           Q L L D     T     +ID                    R+ AI+ LL   G+R+SEA
Sbjct: 159 QKLFLGD----ETEGFLTYIDQEYPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEA 214

Query: 174 LSLTPQNI---MDDQSTLRIQGKGDKIRIV----PLLPSVRKAILEYYDLCPFDLNLNIQ 226
           ++L  +++   M      R  GK D + +     P L +      + Y     D  L   
Sbjct: 215 VNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKIDTALF-- 272

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           L L+RG+  + ++    ++ + +        +  T H LRH+ AT L         +   
Sbjct: 273 LTLYRGVPNR-IDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQ 329

Query: 287 LGHFRLSTTQIYTNV 301
           LGH     T +YT++
Sbjct: 330 LGHASTQVTDLYTHI 344


>gi|167758741|ref|ZP_02430868.1| hypothetical protein CLOSCI_01083 [Clostridium scindens ATCC 35704]
 gi|167663481|gb|EDS07611.1| hypothetical protein CLOSCI_01083 [Clostridium scindens ATCC 35704]
          Length = 419

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 16/180 (8%)

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q LT  +   + T+ E + +  RN A++ LL   G+R S+   LT  +I  + +T+ I  
Sbjct: 223 QYLTKEEVSAVRTAIEQQPLSMRNRAVMLLLILTGIRSSDIACLTLDSIDWETATVCICQ 282

Query: 193 KGDKIRI-VPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           K   + + +PL P +  AI +Y      D     L L+   P        PL     +  
Sbjct: 283 KKTGLPLELPLTPVIGNAIFDYLTQERPDTESRRLFLSETWPF------SPLADNSIENI 336

Query: 247 IRQLRRYLGLPLSTT----AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           + ++ R  G+  S       H  RH+ A+ +L NG     I   LGH    + + Y + +
Sbjct: 337 VAKVFRMAGIRQSPGERKGTHIFRHNAASSMLENGVQQPVISKTLGHSSPQSLETYLSAD 396


>gi|217961355|ref|YP_002339923.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus cereus AH187]
 gi|217067447|gb|ACJ81697.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus cereus AH187]
          Length = 319

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 126/298 (42%), Gaps = 31/298 (10%)

Query: 16  KERQNWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEEK----ITIQTIRQLSY 68
           +E +N +++  IE+   G +  TLQ Y  D R  L  L  + E K    +T + IR LS 
Sbjct: 16  QENKNLVKDFLIEKKSQGKAASTLQQYHWDLRIILFLLHQHFENKNLIELTRKDIRNLSI 75

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILN-MRNLKKSNSLP 126
                 +S  R   +        +S ++S L++         E N+ + +R L K+    
Sbjct: 76  IFQELGMSNARVNGL--------MSALRSALEFCADDDDYDYEFNVGSRVRGLPKNPVRE 127

Query: 127 -RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
              + E+Q   L+D +L     + K++ A     L L Y    R +E   +  + + +  
Sbjct: 128 ITFITEEQIEWLIDELL----EQEKYMLA---TYLALSYYSAARKNEVYQVQKEELTERY 180

Query: 186 STLRIQGK-GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
            T  ++GK G K R+    P V+K I  Y +    D   ++ + +++    K LN   F 
Sbjct: 181 FTNVVRGKRGKKFRLY-YNPRVQKCIRLYIEQRGKDTIPDLFVRVYKNGERKLLNKSAFN 239

Query: 245 RYIRQLRRYL----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            + +   + L    G       H  RHS   +L   G  L  ++S+  H  +STTQ Y
Sbjct: 240 YWCKIFAKMLCEKEGKEYKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSY 297


>gi|3930211|gb|AAC80279.1| transposase [Bacteroides fragilis]
          Length = 410

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYT 299
           G   + ++ + R  G  +  T H  RH+ AT  LLS+G  + ++  +LGH  + TTQIY 
Sbjct: 322 GSCNKILKDIGRQCGFKVRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYA 381

Query: 300 NVNSK 304
            + ++
Sbjct: 382 KITAQ 386


>gi|29345486|ref|NP_808989.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29337378|gb|AAO75183.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|295087238|emb|CBK68761.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 410

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 2/65 (3%)

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV-NS 303
           Y++++    G+  + T H  RH+FAT   L+ G  + ++  +LGH  + TTQIY  + N+
Sbjct: 325 YLKEIADVCGIKKNLTFHLARHTFATTTTLAKGVPVETVSKMLGHTNIETTQIYARITNN 384

Query: 304 KNGGD 308
           K   D
Sbjct: 385 KISND 389


>gi|323693105|ref|ZP_08107324.1| integrase [Clostridium symbiosum WAL-14673]
 gi|323502859|gb|EGB18702.1| integrase [Clostridium symbiosum WAL-14673]
          Length = 432

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 24/33 (72%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           H LRH+F ++LLSNG   + +Q +LGH  +STT
Sbjct: 374 HQLRHTFTSNLLSNGAAPKDVQELLGHADVSTT 406


>gi|290957659|ref|YP_003488841.1| integrase [Streptomyces scabiei 87.22]
 gi|260647185|emb|CBG70288.1| putative integrase [Streptomyces scabiei 87.22]
          Length = 407

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 132/315 (41%), Gaps = 58/315 (18%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK- 77
           + WL  L+I   L++ T ++YE  TR  ++         +  +T+  L   +   FI+  
Sbjct: 87  KEWL-GLQI---LAEGTRRNYEGFTRNHVV-------PHLGRKTLAGLVKKDFEKFIADL 135

Query: 78  -RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            R  + +   ++   +  + + ++     K   E+    ++ + +++S   A++E +  T
Sbjct: 136 HRNGEGMAASTINDRMKFVAAMMQAAVTEKRIAENPAAGVK-VPRTSSF--AVDEDEIPT 192

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----- 191
           L +  L+      K+I  +    +YL    GLRISE L+   +    D   +R Q     
Sbjct: 193 LEEVDLV-----AKYISPQYRLTIYLQAAAGLRISETLAFATECRRTDFIRVRWQVSSKA 247

Query: 192 GKGD-KIRIVPL-------------LPSVRKAIL---EYYDLCPFDL----NLNIQLPLF 230
            +GD + R VPL              P + + I+   E +D  P         + +L +F
Sbjct: 248 NRGDCRTRFVPLKHRAEGEYRDIPTAPFLEEEIVAHAERWDAVPVVFTDKGGRDKELEVF 307

Query: 231 RGIR--GKPLNPGV------FQRYIRQ--LRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
              R  GK   P        F++ ++   L R  G P   T H LRH FA+  L+NG  +
Sbjct: 308 FAPRERGKGTMPTATTYAYHFKKALKAAGLVRADGKP-KYTPHGLRHFFASTALANGIPI 366

Query: 281 RSIQSILGHFRLSTT 295
             +   LGH  + TT
Sbjct: 367 HEVSRWLGHKSIKTT 381


>gi|323694910|ref|ZP_08109060.1| phage integrase family Prophage LambdaCh01 [Clostridium symbiosum
           WAL-14673]
 gi|323501000|gb|EGB16912.1| phage integrase family Prophage LambdaCh01 [Clostridium symbiosum
           WAL-14673]
          Length = 464

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 8/84 (9%)

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS-NGG 278
           D +L + LP      G+P    +  +   +LR   GLP     H+LRHS  T+ L  N G
Sbjct: 318 DYDLVVALP-----NGRPCEDRIILKEFEKLREKAGLP-RVVFHSLRHSSTTYKLKLNHG 371

Query: 279 DLRSIQSILGHFRLST-TQIYTNV 301
           DL++ Q   GH  +   T +Y ++
Sbjct: 372 DLKATQGDTGHAEIDMITSVYAHI 395


>gi|257428815|ref|ZP_05605210.1| integrase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257434137|ref|ZP_05610488.1| integrase [Staphylococcus aureus subsp. aureus E1410]
 gi|282914862|ref|ZP_06322643.1| integrase [Staphylococcus aureus subsp. aureus M899]
 gi|282925359|ref|ZP_06333015.1| phage integrase [Staphylococcus aureus subsp. aureus C101]
 gi|293507876|ref|ZP_06667718.1| phage integrase [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510848|ref|ZP_06669548.1| integrase [Staphylococcus aureus subsp. aureus M809]
 gi|293545448|ref|ZP_06672124.1| integrase [Staphylococcus aureus subsp. aureus M1015]
 gi|296277052|ref|ZP_06859559.1| phage integrase [Staphylococcus aureus subsp. aureus MR1]
 gi|257274459|gb|EEV05971.1| integrase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257281063|gb|EEV11207.1| integrase [Staphylococcus aureus subsp. aureus E1410]
 gi|282312993|gb|EFB43393.1| phage integrase [Staphylococcus aureus subsp. aureus C101]
 gi|282321256|gb|EFB51586.1| integrase [Staphylococcus aureus subsp. aureus M899]
 gi|290919759|gb|EFD96831.1| integrase [Staphylococcus aureus subsp. aureus M1015]
 gi|291094939|gb|EFE25207.1| phage integrase [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466320|gb|EFF08846.1| integrase [Staphylococcus aureus subsp. aureus M809]
          Length = 345

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 73/148 (49%), Gaps = 5/148 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+S  L+++   G R+S A ++  ++I   ++T+ I  +  K    P   S+ K+ +++ 
Sbjct: 183 RSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDER--KTNTSPRYISIAKSDMKHI 240

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                   ++    +F+   G  +N       ++   R   +P+  T+H LRH+  ++LL
Sbjct: 241 MDVISTFAISYDGYIFKEA-GSIINLHAINNALKSACRVNNIPI-ITSHALRHTHCSYLL 298

Query: 275 SNGGDLRSIQSILGHFRLS-TTQIYTNV 301
           + G  +  I   LGH  ++ TT +Y+++
Sbjct: 299 AKGVSIHYISKRLGHKNIAITTSVYSHL 326


>gi|255306829|ref|ZP_05351000.1| site-specific recombinase [Clostridium difficile ATCC 43255]
          Length = 375

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 97/242 (40%), Gaps = 40/242 (16%)

Query: 80  TQKIGDRSLKRSLS----GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +  I DR LK+ ++      K FL  +   +    SNIL    LK   S P+ L++++  
Sbjct: 126 SNNISDR-LKKFVATPSRNFKGFLYGIAHEQKKVTSNILK---LKVPKSKPKTLSKEEIG 181

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           TL+              + R+  +L LLY  G+RI EALSL  ++       + +Q +G+
Sbjct: 182 TLI----------RACNNLRDKFLLTLLYETGMRIGEALSLWIEDFDISDRVIDLQNRGE 231

Query: 196 --------------KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
                         +I I   L  V    +  Y     + N +I + L    + KP+N  
Sbjct: 232 LENNAEIKTVSSPRRIDISQNLADVFMEYIAEYHTDEVETN-HIFIKLSGSNKYKPMNYT 290

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                 R L++  G  +  T H  RHS  T L   G      Q  L   R     IYT +
Sbjct: 291 DVDNLFRTLKKVTG--IYVTPHMFRHSSLTVLRMAGW-----QPELLRIRAGHKNIYTTL 343

Query: 302 NS 303
           N+
Sbjct: 344 NT 345


>gi|290243059|ref|YP_003494729.1| integrase family protein [Thioalkalivibrio sp. K90mix]
 gi|288945564|gb|ADC73262.1| integrase family protein [Thioalkalivibrio sp. K90mix]
          Length = 420

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 69/170 (40%), Gaps = 24/170 (14%)

Query: 154 ARNSAILYLLYGCGLRISEALS----LTPQNIMD-DQSTLRIQGKGDKIRIVPLLPSVRK 208
           AR   +L L+Y  G RIS+       +  + + D D     I GKG K   +PL   V  
Sbjct: 230 ARARWMLTLMYALGPRISDLRGSFGDIHREAVGDRDLWIWSIAGKGGKFAQLPLPSPVVD 289

Query: 209 AILEY-----YDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYL-------G 255
            ++ +         P D      +P      R +PL      R +RQ            G
Sbjct: 290 EMVRFRKSIGIPAFPVDGETTPLVPRSTDTNRNRPLTRQGLDRIVRQTLDSAAQQAYDDG 349

Query: 256 LPLST------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            P +       +AH LRH+ AT +L +G D+R    ++ H  + TTQ YT
Sbjct: 350 DPEAAERLSRASAHALRHTAATDILESGVDMRVAADLMRHSDIRTTQGYT 399


>gi|83815580|ref|YP_445628.1| phage integrase domain/SAM domain-containing protein [Salinibacter
           ruber DSM 13855]
 gi|83756974|gb|ABC45087.1| Phage integrase, N-terminal SAM-like domain protein [Salinibacter
           ruber DSM 13855]
          Length = 302

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 120/285 (42%), Gaps = 37/285 (12%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  T ++Y  D + F     F   E IT   ++ +++ +IRAF+       +   + +R 
Sbjct: 13  SSQTRRAYRTDLQAF-----FSQAEDITADLVQAITHEDIRAFVETMHDLDLAAGTQRRR 67

Query: 92  LSGIKSFLKYLKKRKI-----TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           L+ ++SF  +    +I         ++  M     S+S+ R+L +   L + D   L  +
Sbjct: 68  LAALRSFFDWAMTERIYDRNPARHPDVKPMPPADASSSV-RSLTK---LEVRDT--LEAA 121

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRI--QGKGDK-IRIVP 201
             +     R+ AI+       LR SE  ++  +++  +     L +  +G G++ +RI  
Sbjct: 122 GASDETGLRDQAIILTTIHAALRRSEIAAVAVEDVRPLGRYWILEVNPEGTGEEYVRIPD 181

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI----RGKPLNPGVFQRYIRQLRRYLGLP 257
            + SV   + + + L           PL+R +    RG+PL+       +R+     G+ 
Sbjct: 182 QVVSVIDNVKDQFGLTAG--------PLWRSMSNRNRGEPLSADAIYTIVRRAGTAAGVG 233

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            S T  TLR +    L ++GG   S+  I  H R   +     V+
Sbjct: 234 -SITIDTLRRT-GLRLAADGG--ASLSQIQAHGRFGNSAAAAQVH 274


>gi|33865880|ref|NP_897439.1| phage integrase family protein [Synechococcus sp. WH 8102]
 gi|33633050|emb|CAE07861.1| phage integrase family [Synechococcus sp. WH 8102]
          Length = 186

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 69/160 (43%), Gaps = 20/160 (12%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQ---STLRIQGKGDKIRIVPLLPSVRKAILEYYDL-C 217
           LL     R+SE L L  Q +   +   +    +GK  + R VP+ P +   +  +  +  
Sbjct: 34  LLRRTAARVSEGLQLKWQYVGKTEIIFAAPTTKGK-KRTRTVPIHPDLADQLSSWRQVVA 92

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGV------FQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           P +   N   P      G+  NPG       F   +R+    +G+   +T HT R SF T
Sbjct: 93  PLNGPDNWVFP------GR--NPGEHLTRRGFDHALRKAAGEIGMQGIST-HTFRRSFLT 143

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               NG  LR+IQSI GH  L+    Y +V+     D +M
Sbjct: 144 AASQNGIPLRNIQSISGHSSLTMLSNYLDVSESAKNDCVM 183


>gi|86148021|ref|ZP_01066323.1| site-specific recombinase, phage integrase family protein [Vibrio
           sp. MED222]
 gi|85834154|gb|EAQ52310.1| site-specific recombinase, phage integrase family protein [Vibrio
           sp. MED222]
          Length = 201

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 11/85 (12%)

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           +K+++ +P  LN ++  +++ +         K+  A     L + YGCGLR+SE + L  
Sbjct: 93  IKRASKIPELLNREEVRSIISHC-----RSLKYQTA-----LEMCYGCGLRVSEVVGLYV 142

Query: 179 QNIMDDQSTLRIQ-GKGDKIRIVPL 202
           ++I      L I  GKG K R VPL
Sbjct: 143 KDIDGAAKRLHIHCGKGKKDRFVPL 167


>gi|193070428|ref|ZP_03051369.1| site-specific recombinase [Escherichia coli E110019]
 gi|192956247|gb|EDV86709.1| site-specific recombinase [Escherichia coli E110019]
          Length = 213

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 81/174 (46%), Gaps = 42/174 (24%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQN-----------IMDDQSTLRIQGKG--DKIRI 199
           D R+  +   L+  G+RI EA  LTP++           I+ ++  +R +G+   D++R+
Sbjct: 26  DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRVR-RGRPPKDEVRL 84

Query: 200 VPL--LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL---NPGVFQRYIRQLRR-- 252
           VPL  +  VR+  +E + +              R  R +PL        + +++Q  R  
Sbjct: 85  VPLTDISYVRQ--MESWMIT------------TRPRRREPLWAVTDETMRNWLKQAVRRA 130

Query: 253 -----YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                +  +P+  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 131 EADGVHFSIPV--TPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 182


>gi|224436735|ref|ZP_03657735.1| integrase/recombinase XerD [Helicobacter cinaedi CCUG 18818]
          Length = 196

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 23/193 (11%)

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K   LP  LN+ Q    ++ V +     T        A+L++ Y  G+R  E   +   +
Sbjct: 5   KDKKLPSFLNDFQYKQFLNEVKM-LEENTLKDKIHKLALLFVAY-TGIRRRELGHICKND 62

Query: 181 IMDD--QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF--DLNLNIQLPLFRGIRGK 236
           I ++  Q  ++I+GK  + R V +  S    +L   DL     ++ LN Q  +F   + K
Sbjct: 63  IQENATQYIIKIKGKCSQERFVSIKKSFVGNLLN--DLLEHRENMGLNHQY-VFSYKKDK 119

Query: 237 P-------LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           P       + P + +    Q+R           H LRHSFA+ +     D+   Q  LGH
Sbjct: 120 PNLHIQTPMKPILQKIKAVQIR-------GNNLHLLRHSFASFVYRESRDILLTQKALGH 172

Query: 290 FRLSTTQIYTNVN 302
             L+ TQIY ++N
Sbjct: 173 ASLNNTQIYVHMN 185


>gi|301163006|emb|CBW22554.1| putative bacteriophage integrase [Bacteroides fragilis 638R]
          Length = 125

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           Y++++    GL  +   H+ RHS+AT + L+NG  + ++  +LGH   S T+ Y  V  +
Sbjct: 48  YLKEIADVCGLQKNLCTHSARHSYATSICLANGVSMENVAKMLGHADTSVTKHYARVLDQ 107

Query: 305 N 305
           N
Sbjct: 108 N 108


>gi|301161269|emb|CBW20807.1| putative bacteriophage integrase [Bacteroides fragilis 638R]
          Length = 411

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           I+++    G+    T HT RH+ AT + L+NG  + ++  +LGH  + TTQIY  +  + 
Sbjct: 329 IKKIIGLCGIEKEITWHTSRHTMATEICLTNGVPIETLSKMLGHTNIRTTQIYAKITHEK 388

Query: 306 GGDWMMEIYDQ 316
               M  + D+
Sbjct: 389 ESRDMAALSDK 399


>gi|257869303|ref|ZP_05648956.1| phage integrase [Enterococcus gallinarum EG2]
 gi|257803467|gb|EEV32289.1| phage integrase [Enterococcus gallinarum EG2]
          Length = 324

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 2/60 (3%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G+P+ P   + +  ++++ LG+  +   H+LRH+ AT LL +G   + +Q  LGH R++T
Sbjct: 237 GEPVTPNSIKWHSSRIKKELGIDFN--FHSLRHTHATMLLEDGVKPKIVQERLGHSRIAT 294


>gi|253566956|ref|ZP_04844408.1| integrase [Bacteroides sp. 3_2_5]
 gi|251944519|gb|EES85008.1| integrase [Bacteroides sp. 3_2_5]
          Length = 392

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 13/87 (14%)

Query: 227 LPLFRGIRGKPLNPGV--------FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
           L L  G R   + PG         F+++I+      G+    T H  RH+F +  L  G 
Sbjct: 295 LQLIDGSREGLVFPGFKDSMTQAPFKKWIKAA----GITKKLTFHGARHTFCSLQLDAGT 350

Query: 279 DLRSIQSILGHFRLSTTQIYTN-VNSK 304
           D R++Q ++GH  L+TTQ Y + VNS+
Sbjct: 351 DSRTVQELVGHKNLATTQRYLDSVNSR 377


>gi|153811898|ref|ZP_01964566.1| hypothetical protein RUMOBE_02291 [Ruminococcus obeum ATCC 29174]
 gi|149832032|gb|EDM87117.1| hypothetical protein RUMOBE_02291 [Ruminococcus obeum ATCC 29174]
          Length = 388

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 21/126 (16%)

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-----RGKPLNPGVFQRYIRQLR 251
           IR VP++  V  A +E Y+    +    + L    G       G   NP    R I+++R
Sbjct: 244 IRTVPMMEPVYNAFMEEYEYQKENGFSTVTLDGMEGFIFTNRFGNLHNPQAVNRTIKRIR 303

Query: 252 RYLGL------------PL---STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT- 295
                            P+     + H LRH+F T    N  +++ IQ+++GH  + TT 
Sbjct: 304 ENYNAEEILKAKKEKREPIIIPHFSCHHLRHTFCTRFCENETNIKVIQAVMGHANIETTM 363

Query: 296 QIYTNV 301
            IY  V
Sbjct: 364 DIYAEV 369


>gi|763052|gb|AAA85500.1| integrase [Streptococcus phage T270]
          Length = 362

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +F+   G  + P + ++++ Q+ + + LP   T H  RH+ A+ L  +G  L+ +Q  LG
Sbjct: 268 MFQSKSGGIMTPSLPRKWLLQIIKGIDLP-QITIHGFRHTHASLLFESGLSLKQVQHRLG 326

Query: 289 HFRLSTT-QIYTNV 301
           H  L TT  +YT++
Sbjct: 327 HGDLQTTMNVYTHI 340


>gi|331083472|ref|ZP_08332584.1| hypothetical protein HMPREF0992_01508 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330404165|gb|EGG83713.1| hypothetical protein HMPREF0992_01508 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 477

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 3/69 (4%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS-NGGDLRSIQSILGHFRLS 293
           G P+  G  +  + +L     LP     H+LRHS  T+ L  NGGD++++Q   GH ++ 
Sbjct: 343 GNPIGTGAIRGQLNKLIEEYNLP-PVVFHSLRHSSVTYKLKLNGGDIKAVQGDSGHSQVD 401

Query: 294 -TTQIYTNV 301
             T +Y+++
Sbjct: 402 MVTDVYSHI 410


>gi|254559414|ref|YP_003066509.1| phage integrase [Methylobacterium extorquens DM4]
 gi|254266692|emb|CAX22472.1| putative phage integrase [Methylobacterium extorquens DM4]
          Length = 451

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 37/248 (14%)

Query: 45  QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLK 103
           Q +I +  + + + + +T+ ++S      FIS    Q     +++ R +S I S  ++L+
Sbjct: 156 QHVIAIREFAQSQPSNRTVDRISRRIAGEFISGVLMQAGASQKTVNRKISSISSLWRWLR 215

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY-- 161
           KR    E+      +     S  +++  K+A    + V L  +     + +R   +L+  
Sbjct: 216 KRGFVEENPWEGQGSFV---SAVKSVRPKRAYEAPELVRLLIADPRSTVGSRYGLVLFDL 272

Query: 162 ----LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR-IVPL----LPSVRKAIL 211
               LL GC  RI E   L   ++++ Q   RI QGK +  R I+P+     P +++ I 
Sbjct: 273 MRLGLLTGC--RIGELCQLRVDDVIESQQAFRIPQGKTENARRIMPVHRAVWPIIQRRIA 330

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPG------VFQRYIRQLRRYLGLPLSTTAHTL 265
              D             +F G+   P  P       V +RY    +  LG       H+ 
Sbjct: 331 SSSDGW-----------IFSGL--TPAGPDGKRSWIVVKRYATFRQAVLGQSGEVDFHSF 377

Query: 266 RHSFATHL 273
           R SFAT+L
Sbjct: 378 RRSFATYL 385


>gi|238927807|ref|ZP_04659567.1| prophage LambdaCh01, site-specific recombinase phage integrase
           family protein [Selenomonas flueggei ATCC 43531]
 gi|238884354|gb|EEQ47992.1| prophage LambdaCh01, site-specific recombinase phage integrase
           family protein [Selenomonas flueggei ATCC 43531]
          Length = 377

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 77/187 (41%), Gaps = 27/187 (14%)

Query: 154 ARNS---AILYLLYGCGLRISEALSLT-------PQNIMDDQSTLRIQGK--------GD 195
           A NS   A + L   CGLR  E L L         Q+I  D+  + I  K         +
Sbjct: 185 AENSFWQAAIALAAICGLRRGECLGLKWSKIDFDSQSITIDEQVIEIHHKIHFSTPKSTE 244

Query: 196 KIRIVPLLPSV------RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
            IR +     V      RK  L+ +     +      L L RG  G P+ PG F +  + 
Sbjct: 245 SIRTIHAPAEVFAILKRRKEELDQHKEWLGNAYDEHDLVLCRG-NGSPIRPGNFTKAFKD 303

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGD 308
                 +  +   H LRHS A+ +L +G  +++   ILGH  ++ T  +YT+V  K   +
Sbjct: 304 FLARHNMR-TIRFHDLRHSCASLMLQSGVAMKTASEILGHSSIAITADLYTHVMQKTKEE 362

Query: 309 WMMEIYD 315
              +I D
Sbjct: 363 AAGKIGD 369


>gi|221064674|ref|ZP_03540779.1| integrase family protein [Comamonas testosteroni KF-1]
 gi|220709697|gb|EED65065.1| integrase family protein [Comamonas testosteroni KF-1]
          Length = 226

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 79/198 (39%), Gaps = 38/198 (19%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------GKG 194
           L+  +  T     R+  +L L + CG+RI+E   LT  ++M     LR +        KG
Sbjct: 18  LIKITQGTSRYPERDVLVLMLGHHCGMRITEISRLTVADVMHASGKLRSEISMREAITKG 77

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL------------PLFRGIRGKPLNPGV 242
            + R   L+       +E Y     +  +   L            PL    RG  ++   
Sbjct: 78  CRQRCAYLVSKHAIQAVETYLQYRIERGIGTVLGNEPFRGLLPHQPLIYSSRGDGMSQNT 137

Query: 243 ------------------FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
                              Q ++ +L +  G+    ++H+ R +FA+ +LS  GD+ ++ 
Sbjct: 138 KRRVLETGERRDYKACDSLQAHVTKLYQRAGIK-GGSSHSGRRTFASKVLSTTGDMDTVA 196

Query: 285 SILGHFRLSTTQIYTNVN 302
            +LGH  +  +Q Y +V+
Sbjct: 197 QLLGHSSIDCSQRYVDVD 214


>gi|116252422|ref|YP_768260.1| integrase/recombinase protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115257070|emb|CAK08164.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 667

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 116/297 (39%), Gaps = 36/297 (12%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           Q L + R L    LQ+ E   R F+ +     E ++T +T    +              +
Sbjct: 371 QYLTLRRSLG-FKLQTQESRLRNFVRYATARGELRVTAKTAVDWA------------NHQ 417

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTE---SNILNMRNLKKSNSLPRALNEKQALTLVD 139
            G  +    LS +++F ++L+     TE   S+I   +   +    P   +++Q   L+ 
Sbjct: 418 CGPATWSSRLSTVRAFARHLQVVDPQTEIPPSHIFPPQRRPR----PFIYSDEQIADLLK 473

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR 198
           ++L    H   +          LL   GLR SEA  L  +++  +   L I + K  K R
Sbjct: 474 SML--DMHPGSFRGPTYHYFFGLLASSGLRFSEAARLLREDVDLEAGMLTIRETKFGKTR 531

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL---NPGV-FQRYIRQLR-RY 253
           IVPL PS   A+  Y  +        +    F G  G+ L   NP   F  + RQ   R 
Sbjct: 532 IVPLHPSTTLALRRYASIRDDHAVRRVSKYFFTGDLGRALIHANPHFSFILWTRQTGLRQ 591

Query: 254 LGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQ-------SILGHFRLSTTQIYTNVN 302
                    H LRHSFA   LLS   D   I+       + LGH  +S T  Y   +
Sbjct: 592 PDERDGPRIHDLRHSFAVRTLLSWYRDCEDIERRLPELSTYLGHNHVSATYWYLTAH 648


>gi|56414705|ref|YP_151780.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197363632|ref|YP_002143269.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56128962|gb|AAV78468.1| probable bacteriophage integrase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095109|emb|CAR60655.1| probable bacteriophage integrase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 252

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 74/193 (38%), Gaps = 46/193 (23%)

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC-----------------GL 168
           P  L   +  T+ +  +   +HE          I  LLY C                 G 
Sbjct: 69  PNPLENMRKFTIAEKEMAWLTHEQ---------IAELLYDCQHQNELLTLVVKICLSTGA 119

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
           R  EA++LT   +   + T   + KG K R +P    + K + E             ++ 
Sbjct: 120 RWREAVNLTRSQVTKYRITF-TRTKGKKNRSIP----ISKELYE-------------EIT 161

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
             +G   K  +   FQ      +  + LP     H LRH+FA H + +GG++ ++Q IL 
Sbjct: 162 ALKGF--KFFDDYYFQFASVMDKTSIILPRGQLTHVLRHTFAAHFMMSGGNILALQKILW 219

Query: 289 HFRLSTTQIYTNV 301
           H  +  T  Y ++
Sbjct: 220 HHDIKMTMRYAHL 232


>gi|51596210|ref|YP_070401.1| prophage integrase [Yersinia pseudotuberculosis IP 32953]
 gi|186895231|ref|YP_001872343.1| integrase family protein [Yersinia pseudotuberculosis PB1/+]
 gi|51589492|emb|CAH21114.1| putative prophage integrase [Yersinia pseudotuberculosis IP 32953]
 gi|186698257|gb|ACC88886.1| integrase family protein [Yersinia pseudotuberculosis PB1/+]
          Length = 125

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 28/50 (56%)

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           R  + LP     H LRH+FA+H +  GG++  +Q ILGH  +  T  Y +
Sbjct: 55  RAAIELPKGQRTHVLRHTFASHFMMGGGNILVLQQILGHSTILMTMRYAH 104


>gi|306827181|ref|ZP_07460471.1| integrase [Streptococcus pyogenes ATCC 10782]
 gi|304430637|gb|EFM33656.1| integrase [Streptococcus pyogenes ATCC 10782]
          Length = 362

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 21/158 (13%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDD-----------QSTLRIQGKGDKI--RIVPLLP 204
           A+  LL   G+R  E L+LT  ++  +           Q  L I     K   R++ L  
Sbjct: 190 ALFRLLAFTGIRKGELLALTWDDLNGNTLSINKAVTRTQVGLEIDVTKTKSSDRLISLDD 249

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
              + +LE ++  P          +F+   G  + P + ++++ Q+ +   LP   T H 
Sbjct: 250 ETLEILLELHETFP------TSTLMFQSESGGIMTPSLPRKWLLQIIKGTDLP-QITIHG 302

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
            RH+ A+ L  +G  L+ +Q  LGH  L TT  +YT++
Sbjct: 303 FRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHI 340


>gi|288925568|ref|ZP_06419500.1| integrase [Prevotella buccae D17]
 gi|288337506|gb|EFC75860.1| integrase [Prevotella buccae D17]
          Length = 411

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           I+++    G+    T HT RH+ AT + L+NG  + ++  +LGH  + TTQIY  +  + 
Sbjct: 329 IKKIIGLCGIEKEITWHTSRHTMATEICLTNGVPIETLSKMLGHTNIRTTQIYAKITHEK 388

Query: 306 GGDWMMEIYDQ 316
               M  + D+
Sbjct: 389 ESRDMAALSDK 399


>gi|188585021|ref|YP_001916566.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349708|gb|ACB83978.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 194

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/177 (19%), Positives = 74/177 (41%), Gaps = 15/177 (8%)

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----GDKIR 198
           +  S +  W+  R+  +  + Y CGLR SE   +   +     + L ++       + IR
Sbjct: 20  IEKSKDKHWL--RDITMFRIAYRCGLRASEVGLIQVSDFNPKMNELYVRRNKNSLNNTIR 77

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +        K  ++ Y L   ++       +F+  +  P++     R +++      +  
Sbjct: 78  LDNKTARYLKKYIKSYQLKENEI-------MFKSQKRSPISRQNLDRIMKKYCEKAKIKD 130

Query: 259 STT--AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            T    H ++HS A HL   G D++ +Q  LGH  +++T +Y    ++   +   +I
Sbjct: 131 VTNWHFHVMKHSIAVHLAETGLDVKELQHYLGHRNIASTLVYFQFTTRQQDEMYQKI 187


>gi|217961405|ref|YP_002339973.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus cereus AH187]
 gi|229140651|ref|ZP_04269202.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST26]
 gi|217065831|gb|ACJ80081.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus cereus AH187]
 gi|228642824|gb|EEK99104.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST26]
          Length = 376

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 37/158 (23%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQ-------GKGD--------KIRIVPLLPSVRKAIL 211
           G+RI E L+L   +I  D   + +Q       GK +          R++P+   + + +L
Sbjct: 198 GMRIGEVLALQWDDINFDNKAIHVQRTLTLVDGKYELGETKTEASNRVIPMTEELMEELL 257

Query: 212 EY--------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           +Y        +DL     N  I  P     + K L   +   YIR              H
Sbjct: 258 DYQNHKKENSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYIR-------------FH 304

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTN 300
            +R +F T L+ +G + + +  +LGH  +STT  IYT+
Sbjct: 305 DIRRTFTTILIDSGANAKVVAKLLGHTNVSTTLNIYTD 342


>gi|1877429|gb|AAC48867.1| integrase [Streptococcus pyogenes phage T12]
          Length = 362

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +F+   G  + P + ++++ Q+ + + LP   T H  RH+ A+ L  +G  L+ +Q  LG
Sbjct: 268 MFQSKSGGIMTPSLPRKWLLQIIKGIDLP-QITIHGFRHTHASLLFESGLSLKQVQHRLG 326

Query: 289 HFRLSTT-QIYTNV 301
           H  L TT  +YT++
Sbjct: 327 HGDLQTTMNVYTHI 340


>gi|146297702|ref|YP_001181473.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145411278|gb|ABP68282.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 327

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 114/300 (38%), Gaps = 74/300 (24%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKR------------------SLSGIKSFLKYL 102
           QT+R  ++ +  + I+      IG   LK                   SLS IK     L
Sbjct: 17  QTLRPSTFQDYESLINNHIVPSIGHYKLKDLRPEHLQALYNSKHESGLSLSTIKHIHVIL 76

Query: 103 KKRKITTESNILNMRNLKKSNSLPRALNEKQ--ALTLVDNVLLHTSHETKWIDARNSAIL 160
                    N L +RN+ ++ +LP+A  +K+   LTL +      + E +    R     
Sbjct: 77  HSALDQALKNGLVVRNVSEATTLPKAKTKKEIRVLTLEEQKRFVAALEGE----RLKPAF 132

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------------------------GKGDK 196
            L    G+R+ E L+L    +   + T+ I+                             
Sbjct: 133 LLALASGVRLGELLALKWDCVNLKEGTITIKRSLRRIKTYDKSLPTKTMLAFQEPKTAAG 192

Query: 197 IRIVPLLPSVRKAILEY--------------YDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           IR +P+ P + + + E+              Y+    D NL     +F    G P+ P  
Sbjct: 193 IRTIPVPPVILEELKEHRKRQLEEKLKAGSLYE----DNNL-----VFATELGTPIEPRN 243

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           F R   ++     L ++   H LRH++AT LL      + +Q +LGH  +STT  IY++V
Sbjct: 244 FLRVFYRIIEKANLDINF--HALRHTYATRLLEANEHPKVVQELLGHNDISTTLNIYSHV 301


>gi|324115011|gb|EGC08976.1| phage integrase [Escherichia fergusonii B253]
          Length = 392

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           T H +RH+FAT L+ +G D+ +I+ +LGH  +  T+ Y
Sbjct: 336 TIHEMRHTFATKLIESGADIHTIKDLLGHSTIKVTERY 373


>gi|265753035|ref|ZP_06088604.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
 gi|263236221|gb|EEZ21716.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
          Length = 411

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           IR + +  G+    T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY  +
Sbjct: 329 IRAVAKRCGITKHLTWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKI 384


>gi|256957171|ref|ZP_05561342.1| integrase/recombinase [Enterococcus faecalis DS5]
 gi|256947667|gb|EEU64299.1| integrase/recombinase [Enterococcus faecalis DS5]
          Length = 290

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 86/192 (44%), Gaps = 13/192 (6%)

Query: 132 KQALTLVD-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           K+A T  D + LL     + + + R++  + L++  G+RI+    L  ++I  ++  L +
Sbjct: 99  KEAATQEDIDRLLRILDLSNYYEFRDACAVLLMFQTGIRINTLSQLENKHINFERKCLIL 158

Query: 191 QG---KGDKIRIVPLLPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRG----KPLNP 240
            G   K  K+ I+P+   V + I   ++  +L     N+   L +F    G    K    
Sbjct: 159 DGSIMKNHKLSILPISDEVLQMIVTLIKQNNLIRESKNVENSL-IFITYEGTSIQKSDKS 217

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              +R + Q  +   +P +   H LR  FAT+LL  G  +  I   LGH  L TT  Y  
Sbjct: 218 NAIRRRLGQYSKDFVIP-NINPHGLRRGFATNLLKKGASVPLISKALGHADLETTSRYLY 276

Query: 301 VNSKNGGDWMME 312
           ++S    + + E
Sbjct: 277 LDSTEAANELRE 288


>gi|220927526|ref|YP_002504435.1| integrase family protein [Clostridium cellulolyticum H10]
 gi|219997854|gb|ACL74455.1| integrase family protein [Clostridium cellulolyticum H10]
          Length = 385

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 71/170 (41%), Gaps = 31/170 (18%)

Query: 154 ARNSAILYLLYGCGLRISEALSL--------TPQNIM-----------DDQSTLRIQGKG 194
            RN  I  +LY  G+RI E LSL         P N+            DDQ+  +  G  
Sbjct: 198 TRNKLIFDILYETGMRIGELLSLKVNDYSEVDPWNLFGYIYIIYDEENDDQNRQQKTGSR 257

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG----IRGKPLNPGVFQRYIRQL 250
             +  + LL  + + I E   + P+   +  Q  +F       +G+PL+  + ++   + 
Sbjct: 258 TLVTTMKLLGRIEEYITE---IRPY---IKEQEYIFVAESGKTKGQPLSRSLIEKVFSEC 311

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               G+    T H LRH+  T L   G D   ++   GH  + TT+ YT+
Sbjct: 312 TEKTGIKC--TPHMLRHTHLTELSEFGFDEIFLKGRAGHRSIHTTEKYTH 359


>gi|110633561|ref|YP_673769.1| phage integrase [Mesorhizobium sp. BNC1]
 gi|110284545|gb|ABG62604.1| phage integrase [Chelativorans sp. BNC1]
          Length = 476

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +FR   G+P +   ++   R L    GLP ST  H+LRH++A+ L+  G  L  +   LG
Sbjct: 331 VFRNQDGRPWSE-RYKHLFRDLTDACGLPKSTVFHSLRHTYASQLVQAGMQLSIVAKQLG 389

Query: 289 HFRLSTT 295
           H  ++T 
Sbjct: 390 HADIATV 396


>gi|157147898|ref|YP_001455217.1| tyrosine recombinase [Citrobacter koseri ATCC BAA-895]
 gi|157085103|gb|ABV14781.1| hypothetical protein CKO_03705 [Citrobacter koseri ATCC BAA-895]
          Length = 200

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 65/159 (40%), Gaps = 18/159 (11%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
            RN  ++ L +  GLR SE   L   +I + D+     + K       PLL    ++I  
Sbjct: 32  VRNRCLVLLCFIHGLRASEICRLRISDIDLKDKCIHIYRLKKGFSTTHPLLEEEIRSIKS 91

Query: 213 YYDLCPFDLNLNIQLP--------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           +         L I+L         LF   +G PL+   F + I +  +   L +    H 
Sbjct: 92  W---------LKIRLTSQHSETEWLFLSRKGNPLSRQQFYQIIARAGKKAKLAICAHPHM 142

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           LRHS    L + G D R IQ  LGH  +  T  YT  N+
Sbjct: 143 LRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNA 181


>gi|310826137|ref|YP_003958494.1| hypothetical protein ELI_0515 [Eubacterium limosum KIST612]
 gi|308737871|gb|ADO35531.1| hypothetical protein ELI_0515 [Eubacterium limosum KIST612]
          Length = 432

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           H LRH+F ++LLSNG   + +Q +LGH  +STT  IY + 
Sbjct: 374 HQLRHTFTSNLLSNGAAPKDVQELLGHADVSTTMNIYAHA 413


>gi|260576688|ref|ZP_05844674.1| integrase family protein [Rhodobacter sp. SW2]
 gi|259021055|gb|EEW24365.1| integrase family protein [Rhodobacter sp. SW2]
          Length = 430

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 26/39 (66%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H LRH+FA+ L+S G  L  I  +LGH ++ TTQ Y ++
Sbjct: 356 HDLRHTFASLLVSGGASLEMIGKLLGHSQMQTTQRYAHL 394


>gi|160881628|ref|YP_001560596.1| integrase family protein [Clostridium phytofermentans ISDg]
 gi|160430294|gb|ABX43857.1| integrase family protein [Clostridium phytofermentans ISDg]
          Length = 443

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 97/228 (42%), Gaps = 58/228 (25%)

Query: 124 SLPRA--LNEKQALTLVDNVLLH---TSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           +LPRA    E++ LTL +  +L    T HE +        ++ L    GLR+ E   L  
Sbjct: 208 TLPRAERKKERRVLTLKEQEILLKEITGHELE-------PVVRLSLATGLRVGEVTGLEW 260

Query: 179 QNIMDDQSTLRIQG----------------KGDK-IRIVPLLPSVRKAILEYYDLC--PF 219
            ++  ++  + ++G                K DK  R +PLL ++ + +L+ Y +     
Sbjct: 261 CDVDFNKKEVTVRGTLKCTRKGMEYYKDTPKTDKSTRSIPLLDNM-ELMLKRYRIIQKEH 319

Query: 220 DLNLNIQLPLFRGIR--------GKPLN------------PGVFQRY-----IRQLRRYL 254
            L++ I      G+         GKP +             G+ ++Y     IRQ +   
Sbjct: 320 KLSMGIDWKPIEGLEDLVFLREDGKPFSGQHIRQQLVHIVDGINEKYYSKKSIRQEKLLE 379

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
                 T H LRH+FAT  L NG   + +Q ILGH  ++ T  +YT+V
Sbjct: 380 EKFDYFTPHALRHTFATRALENGIPPKVVQEILGHSSITMTLDLYTHV 427


>gi|27228541|ref|NP_758591.1| cointegrase [Pseudomonas resinovorans]
 gi|219856962|ref|YP_002473994.1| cointegrase [Pseudomonas sp. CA10]
 gi|26106129|dbj|BAC41569.1| cointegrase [Pseudomonas resinovorans]
 gi|219688890|dbj|BAH09981.1| cointegrase [Pseudomonas putida]
          Length = 323

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 27/173 (15%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRI-QGKGDK--IRIVPLLPSVRK 208
           R+ A+L + +  G R  E   L  +++   +    TL + Q KGD+  I      P++++
Sbjct: 137 RDMALLLIGFWRGFRSDELCRLQVEHVQVEVGAGMTLFLPQSKGDRENIGTTHYAPALKR 196

Query: 209 AILEYYDLCPFDLNLNI-------------QLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
                  LCP    L+              +L  +  +  + L+PG     +RQ+ +  G
Sbjct: 197 -------LCPVQAYLDWISVAGIARGAVFRRLDRWGHLNDRALHPGSLISLLRQILQRAG 249

Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +P    T+H+LR  FAT   +NG DL+++ + +G   + +   Y +     GG
Sbjct: 250 IPAELYTSHSLRRGFATWATANGWDLKALMTYVGWKDIKSAMRYIDPAISFGG 302


>gi|134287751|ref|YP_001109917.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134132401|gb|ABO60136.1| phage integrase family protein [Burkholderia vietnamiensis G4]
          Length = 494

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 101/247 (40%), Gaps = 25/247 (10%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNEKQALTLV 138
           +K+ + +  R+L+ + S  +Y  +    T +    +    +S +   P+ +     L   
Sbjct: 230 RKVSEATQSRALAVVASLFRYWTETGYLTANPAAGLVRGGRSRASFAPQRMLPPALLAAC 289

Query: 139 DNVLLHTSH--ETKWIDARNSAILYLLYGCGLRISEAL----SLTPQNIMDDQS--TLRI 190
           D  +   S   +   + AR  AI  L    G+R+ E +    +  P+   DD    TL +
Sbjct: 290 DASVAEASSTDDDALVIARRRAIWTLYRYAGVRLVELVWFDEAQLPKLDADDSGRWTLHV 349

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDL--CPFDLNLNIQLPLFRGIRGKPL-NPGVF---- 243
            GKG K R +PL P     +  Y  L   P   +      L  G++G  L + G++    
Sbjct: 350 LGKGRKTRAIPLPPICVPILTTYRQLRGLPAQPSPYEHAALIHGLKGGSLQSSGLYDEVK 409

Query: 244 -------QRYIRQLRRYLGLPLSTTAHTLRHSFA-THLLSNGGDLRSIQSILGHFRLSTT 295
                  +R  +          S + H LRH++A T ++ +   L + Q++LGH  + TT
Sbjct: 410 AIFITAAERLEKADLAAAARLRSASPHWLRHAYARTLVVDHQVPLPAAQALLGHASVQTT 469

Query: 296 QIYTNVN 302
             Y   +
Sbjct: 470 AGYAKTD 476


>gi|114775505|ref|ZP_01451073.1| site-specific recombinase, phage integrase family protein
           [Mariprofundus ferrooxydans PV-1]
 gi|114553616|gb|EAU55997.1| site-specific recombinase, phage integrase family protein
           [Mariprofundus ferrooxydans PV-1]
          Length = 415

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 23/144 (15%)

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST------LRIQGKGD-KIRIV 200
           +++++ +R   +L LL   G R  E  ++  ++++  +        L+   +GD K R+V
Sbjct: 148 KSRFVQSRARIMLKLLSDTGARRVEIATILVEDVLRTKKNGSCKLLLKTAKRGDWKERLV 207

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQL-------------PLFRGIRGKPLNPGVFQRYI 247
           P+  +   A+L + ++   D  L+++              PL    RGKPL+       I
Sbjct: 208 PIPEATLDALLTFIEI---DRRLHLRKLKHKQKEITDNTGPLLLTFRGKPLSTPTITVDI 264

Query: 248 RQLRRYLGLPLSTTAHTLRHSFAT 271
            +LR+  G+    TAH LRH + T
Sbjct: 265 SRLRKIAGISERATAHMLRHRWIT 288


>gi|34762250|ref|ZP_00143256.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27888108|gb|EAA25168.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 360

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 61/146 (41%), Gaps = 12/146 (8%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK--IRIVPLLPSVRKAILEYYDLCPF 219
           +L   GLRI E L +  +NI        ++    K  +R VP+   +       Y     
Sbjct: 215 ILCYTGLRIGELLKVNRKNIYLKDFYFEVEKSKSKAGVRKVPIADKILDLFKNRY----- 269

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
               +    L++   G   +   F  + R L R +GL   +  H  RH+FAT L  N  D
Sbjct: 270 ---FSKDTFLWQRYDGLEYDYDSFDNHFRILFRDMGLSYHSL-HDTRHTFATLLSDNVAD 325

Query: 280 LRSIQSILGHFRLSTT-QIYTNVNSK 304
             ++  ++GH    TT ++Y + N K
Sbjct: 326 KDAVIKMIGHSSYKTTSEVYVHKNIK 351


>gi|53716946|ref|YP_105717.1| phage integrase family protein [Burkholderia mallei ATCC 23344]
 gi|121596450|ref|YP_989655.1| phage integrase family protein [Burkholderia mallei SAVP1]
 gi|124381592|ref|YP_001024200.1| phage integrase family protein [Burkholderia mallei NCTC 10229]
 gi|126446520|ref|YP_001078394.1| phage integrase family protein [Burkholderia mallei NCTC 10247]
 gi|167002300|ref|ZP_02268090.1| site-specific recombinase, phage integrase family [Burkholderia
           mallei PRL-20]
 gi|238562796|ref|ZP_00439829.2| site-specific recombinase, phage integrase family [Burkholderia
           mallei GB8 horse 4]
 gi|254174529|ref|ZP_04881191.1| phage integrase family protein [Burkholderia mallei ATCC 10399]
 gi|254356822|ref|ZP_04973097.1| site-specific recombinase, phage integrase family [Burkholderia
           mallei 2002721280]
 gi|52422916|gb|AAU46486.1| phage integrase family protein [Burkholderia mallei ATCC 23344]
 gi|121224248|gb|ABM47779.1| phage integrase family protein [Burkholderia mallei SAVP1]
 gi|124289612|gb|ABM98881.1| phage integrase family protein [Burkholderia mallei NCTC 10229]
 gi|126239374|gb|ABO02486.1| phage integrase family protein [Burkholderia mallei NCTC 10247]
 gi|148025849|gb|EDK83972.1| site-specific recombinase, phage integrase family [Burkholderia
           mallei 2002721280]
 gi|160695575|gb|EDP85545.1| phage integrase family protein [Burkholderia mallei ATCC 10399]
 gi|238521889|gb|EEP85337.1| site-specific recombinase, phage integrase family [Burkholderia
           mallei GB8 horse 4]
 gi|243062035|gb|EES44221.1| site-specific recombinase, phage integrase family [Burkholderia
           mallei PRL-20]
          Length = 565

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 22/161 (13%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKGDKIRIVPLLPSVRKAILEYY- 214
           +L   Y  GLR SE +  T  +I  D+     L + GKG K+  V  LP++ ++ L+ Y 
Sbjct: 385 LLDFGYATGLRASEFVGATLGDIRRDEHGDHWLHVIGKGGKLGKV-ALPALARSALDQYL 443

Query: 215 ---DLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGLPLS---------- 259
               L       +   PL   +   G  +      R +R+  R+    +           
Sbjct: 444 VQRGLPVTPSRWDPATPLVANLEEDGAGIESTRLWRVLRRFFRFAADAIQDERPATAEKL 503

Query: 260 --TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              + H +RH+ ATH L+ G +L  ++  L H  +STT  Y
Sbjct: 504 RRASPHWMRHTHATHALARGAELIMVRDNLRHASISTTSTY 544


>gi|158318840|ref|YP_001511348.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158114245|gb|ABW16442.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 184

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 42/85 (49%), Gaps = 6/85 (7%)

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIR--QLRRYLGLP-LST---TAHTLRHSFATHLLSNG 277
           N   PLF  I G+PL+    +R I     R     P +ST   TAHTLRH+ A  LL  G
Sbjct: 66  NPGDPLFPTITGRPLSRDAIERRIALYTARAAASCPSISTKHVTAHTLRHTAAMRLLLAG 125

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVN 302
            D   I   LGH  ++TT  Y + +
Sbjct: 126 VDQSVIALWLGHAHIATTDRYLHAD 150


>gi|71276104|ref|ZP_00652384.1| Phage integrase [Xylella fastidiosa Dixon]
 gi|71902331|ref|ZP_00684313.1| Phage integrase [Xylella fastidiosa Ann-1]
 gi|71163022|gb|EAO12744.1| Phage integrase [Xylella fastidiosa Dixon]
 gi|71727925|gb|EAO30152.1| Phage integrase [Xylella fastidiosa Ann-1]
          Length = 179

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 64/145 (44%), Gaps = 16/145 (11%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDL 216
           L L YG   R    L L  +   D Q  L  Q   G+    +  P++P     I ++  L
Sbjct: 23  LALAYGTLARPEAILGLW-REFADTQRRLLTQNPPGRKQTKKHRPVVP-----ICDF--L 74

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
            P+ L+++   PL     GKP+    F+   R LR    LP  T    +RH+ AT L S 
Sbjct: 75  LPWILSVD-SGPLVH-WHGKPI--ASFKTAWRALRTRADLPKDTVPKVIRHTMATELRSA 130

Query: 277 GGDLRSIQSILGH-FRLSTTQIYTN 300
           G   + IQ +LGH     TT +YT 
Sbjct: 131 GVSAQDIQGMLGHRAHGGTTDVYTK 155


>gi|23013027|ref|ZP_00052983.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1]
          Length = 193

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 16/166 (9%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMD------DQSTLRIQ-GKGDKIRIVPLLPSV 206
           ARN   + L +  G+R+ E   L   +++D      DQ TL     K  + R V +   +
Sbjct: 26  ARNRMAVMLSFYAGMRVGEIAHLKLGDVLDGDGRVKDQITLLAHYTKTAEARAVFVSGKL 85

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           R+  LE Y  C  +   +   P     +    +     +   Q+    G+    ++H+ R
Sbjct: 86  RRE-LERYVSC--NTTTDRAAPFLVTQKATAFSANTLCQLFGQIYALAGID-GASSHSGR 141

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             F T L  +G   + I ++ GH  LSTTQ Y  VN     D MM+
Sbjct: 142 RWFITQLAHSGVSAKVIMTLAGHRHLSTTQRYIEVN-----DQMMK 182


>gi|307565773|ref|ZP_07628242.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345599|gb|EFN90967.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 409

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +Q  ++ LR   G+    T HT RH+FAT + L  G  + ++  +LGH  +S T+ Y  V
Sbjct: 327 YQTCLKALRLRAGISFPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKV 386

Query: 302 N 302
            
Sbjct: 387 T 387


>gi|307268102|ref|ZP_07549490.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|295113806|emb|CBL32443.1| Site-specific recombinase XerD [Enterococcus sp. 7L76]
 gi|306515743|gb|EFM84270.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
          Length = 378

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 84/194 (43%), Gaps = 38/194 (19%)

Query: 157 SAILYLLYGC-GLRISEALSLTPQNIMDDQSTLRIQ----------GKGD------KIRI 199
           S I+ ++ G  G+R +E L  T  +I  +   + I           GK        KI+I
Sbjct: 192 SPIMVVVAGATGMRFAELLGTTWNDINFEDEIIDIHKTWNYKMNCWGKTKNESSIRKIKI 251

Query: 200 ----VPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRR 252
                 LL   +KA  E +D       L IQ P   +F   +   ++     +Y+R+   
Sbjct: 252 DFHTAQLLKEYKKAQKELFD------KLEIQNPENFIFYNSQNGLISNNAVTKYLRKKLS 305

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-----QIYTNVNSKNGG 307
            +G+    T H LRH+ A+ LL  G D   +   LGH  L TT      I   +++KN  
Sbjct: 306 EIGVTKKFTLHGLRHTHASVLLYQGCDTIYVSKRLGHSSLDTTITTYLHIIKELDNKN-- 363

Query: 308 DWMME-IYDQTHPS 320
           D M++ ++D+ + S
Sbjct: 364 DEMIDSVFDKIYKS 377


>gi|218532644|ref|YP_002423460.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218524947|gb|ACK85532.1| integrase family protein [Methylobacterium chloromethanicum CM4]
          Length = 405

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 65/147 (44%), Gaps = 18/147 (12%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRI----VPLLPSVRKAILE 212
           A+  LL+  G R S+A+    Q++    + LR  Q KG   +     VP+LP++R AI  
Sbjct: 204 ALCLLLFAGGRR-SDAVLFGRQHLQG--AWLRYTQHKGRNAKPMTLEVPVLPALRAAI-- 258

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
             + CP     +  L      RGKP     F  + +   R  GL L  +AH LR + AT 
Sbjct: 259 --EACP-----SQNLAFLVTERGKPFTSNGFGNWFKDRCREAGL-LHCSAHGLRKAGATL 310

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYT 299
              NG   R + ++ G       + YT
Sbjct: 311 AAENGATERQLMAMFGWRTSKMAEHYT 337


>gi|218259428|ref|ZP_03475166.1| hypothetical protein PRABACTJOHN_00823 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225121|gb|EEC97771.1| hypothetical protein PRABACTJOHN_00823 [Parabacteroides johnsonii
           DSM 18315]
          Length = 408

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           Y++++     +  + T H  RHS AT  LL+NG  + ++  ILGH  + TTQIY  +
Sbjct: 327 YLKEIAAICRIEKTLTYHVARHSCATSVLLANGVPIETVSKILGHTNIRTTQIYARI 383


>gi|325000066|ref|ZP_08121178.1| phage integrase [Pseudonocardia sp. P1]
          Length = 347

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 60/152 (39%), Gaps = 15/152 (9%)

Query: 154 ARNSAILYL---LYGC-GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSV 206
           A +  ++Y    L GC GLR  E   L   ++    D    L + GKG  +R VP    +
Sbjct: 154 AMSDPVMYAWLGLMGCSGLRCCEVAWLRSSDVEERADGTGLLHVTGKGGHVRTVPAGTDL 213

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              +  + +  P            R + G P  P    + + +  R +G+    TAH LR
Sbjct: 214 MTVLRPFLEARPTGHVFA------RPLDGGPHTPDRVSQLVAKFLRGIGV--QATAHQLR 265

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           H F T       D+     ++GH  +  T+ Y
Sbjct: 266 HRFGTDYHEIDQDVFRQAELMGHASVEMTRRY 297


>gi|253682391|ref|ZP_04863188.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum D str. 1873]
 gi|253562103|gb|EES91555.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum D str. 1873]
          Length = 236

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 2/61 (3%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
           +Y+ ++  Y  L ++   H+LRH+ AT +L  G +++ IQ  LGH +LSTT   Y++V +
Sbjct: 161 KYLSRVINY-ELQINFCFHSLRHTHATMMLEAGANIKDIQHRLGHSKLSTTMDTYSHVTN 219

Query: 304 K 304
           K
Sbjct: 220 K 220


>gi|237666570|ref|ZP_04526555.1| site-specific recombinase, phage integrase family [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|237657769|gb|EEP55324.1| site-specific recombinase, phage integrase family [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 361

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           GKPL   +++   R +     L ++ T H+LRH+ AT LL NG +++ +Q  LGH
Sbjct: 298 GKPLTTSIYKYLSRVVNN--ELCINFTMHSLRHTHATLLLENGANMKDMQKRLGH 350


>gi|224371536|ref|YP_002605700.1| integrase family protein [Desulfobacterium autotrophicum HRM2]
 gi|223694253|gb|ACN17536.1| integrase family protein [Desulfobacterium autotrophicum HRM2]
          Length = 55

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 25/36 (69%)

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           L H FA+HLL    D+R+IQ +LGH  + TT IYT+
Sbjct: 4   LSHCFASHLLQANYDIRTIQELLGHSDVRTTMIYTH 39


>gi|254283555|ref|ZP_04958523.1| hypothetical protein NOR51B_2055 [gamma proteobacterium NOR51-B]
 gi|219679758|gb|EED36107.1| hypothetical protein NOR51B_2055 [gamma proteobacterium NOR51-B]
          Length = 391

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 107/246 (43%), Gaps = 18/246 (7%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           I ++S  E++ F ++ R   I   +    L  ++  L       +   +    ++     
Sbjct: 143 INRISRQEVQQFHNELRESGIAPATADHHLKLLRHALNLAVDWGLLQANPAARVKQFNVF 202

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           N + R L+E +   L+  VL   SHE + +   + A+L+LL   G R+ E L+    +I 
Sbjct: 203 NEVERYLSEVELRRLL-AVL--KSHENRPV---SCAVLWLLC-TGSRVGEMLAAEWPDID 255

Query: 183 DDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
                  +     K  K+R +PL   V   +L+     P          LF G RG PL 
Sbjct: 256 RGNRVWVVHATNSKSKKLRSIPL-NDVALGVLDELQTLP---RYQPDGRLFIGKRG-PL- 309

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            G   +    +R   GL  + T H LRHS A+ L+++G  L  +Q +LGH     T  Y+
Sbjct: 310 -GTINKVWYGIRDAAGLE-NFTLHCLRHSHASLLVNSGHSLYEVQRVLGHSDPKVTMRYS 367

Query: 300 NVNSKN 305
           +++ ++
Sbjct: 368 HLSQES 373


>gi|170761279|ref|YP_001786805.1| XerC/D integrase-recombinase protein [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169408268|gb|ACA56679.1| XerC/D integrase-recombinase protein [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 320

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 6/150 (4%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           D R+ AI   L   G R    L++  +++     S L    K  K   VPL  +++  ++
Sbjct: 143 DFRSWAICSFLLSTGCRAETLLNVHVEDVNFSTNSILFRHMKTKKQITVPLSNTLKVNLM 202

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           EY       + L  +  LF  + G+ +      + ++   ++  +      +T R++FAT
Sbjct: 203 EYIQ----RMGLKQEDYLFPLLNGEKMKYDTCHQNLKNYFKHRNVKFHG-VNTFRNTFAT 257

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             L NG  +  IQ  LGH  +  T+ Y N+
Sbjct: 258 MALKNGAGIYLIQKCLGHSDIKMTERYINL 287


>gi|153808242|ref|ZP_01960910.1| hypothetical protein BACCAC_02530 [Bacteroides caccae ATCC 43185]
 gi|149129145|gb|EDM20361.1| hypothetical protein BACCAC_02530 [Bacteroides caccae ATCC 43185]
          Length = 239

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 9/72 (12%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY---- 298
           F  +++ L R L L  S T++TLRHS+AT     G  +  I   LGH  + TTQIY    
Sbjct: 158 FNNHLKSLSRKLRLHSSVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLKGF 217

Query: 299 -----TNVNSKN 305
                T VN +N
Sbjct: 218 ELEERTKVNKQN 229


>gi|42780062|ref|NP_977309.1| Tn554-related, transposase A [Bacillus cereus ATCC 10987]
 gi|42735980|gb|AAS39917.1| Tn554-related, transposase A [Bacillus cereus ATCC 10987]
          Length = 384

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 99/219 (45%), Gaps = 32/219 (14%)

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           +G KSFL ++ + K  ++    N+  LK+     +   ++Q  T+         H T  I
Sbjct: 151 NGYKSFLHHVNEGKPYSK----NILKLKEPKEKIKIFTKEQVETIY--------HSTTNI 198

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDD----QSTLRIQGKGD-----KIRIVPLL 203
             R+  ++ LL+  GLRI EALSL  ++   D    +  L++  +G+     K++     
Sbjct: 199 --RDRFLVLLLFETGLRIGEALSLFLKDFQFDAKQRKHKLKLTDRGELPNGGKLKTGSRE 256

Query: 204 PSVRKAILEYYDLCPF----DLNLN---IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
             + ++++  YD   +    D N +   + + LF    G+P+         +++ R  G+
Sbjct: 257 LEISQSLMNLYDDYLYEVIDDYNPDHNFVLVKLFGKNSGEPMTYSDVYATFKEIERKTGI 316

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            +  T H  RH+  T       +++ +Q  LGH ++ TT
Sbjct: 317 YI--TPHLFRHTHGTIYYLETKNIKMVQERLGHSQVQTT 353


>gi|331699805|ref|YP_004336044.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326954494|gb|AEA28191.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
          Length = 599

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           V QRY R  RR   L L TT H LRH  AT L+  G D+R++   LGH    TT + T
Sbjct: 343 VSQRYERLARR---LGLRTTLHKLRHYSATELILAGVDVRTVAGRLGHAGGGTTTLRT 397


>gi|326800846|ref|YP_004318665.1| integrase family protein [Sphingobacterium sp. 21]
 gi|326551610|gb|ADZ79995.1| integrase family protein [Sphingobacterium sp. 21]
          Length = 392

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 69/151 (45%), Gaps = 17/151 (11%)

Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
            L+ C  G+RIS++  L    I+ ++ T +++ K ++      +P  + A+         
Sbjct: 249 FLFSCLTGVRISDSHRLHRNMIVGNKLTFKMK-KTERYGRTATIPLPKAAL--------- 298

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
           DL    +  LF     K +N      Y++ +    G+  + T H  R +F T  +  GGD
Sbjct: 299 DLVEGQEGYLFTKFADKTIN-----EYLKVIAVIAGIEKNLTYHCARDTFGTIFIELGGD 353

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           ++S+  I+GH     T+IY  ++ +   + M
Sbjct: 354 IKSLCDIMGHSDTRITEIYLKMSDQRKQNLM 384


>gi|291515507|emb|CBK64717.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 332

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 35/68 (51%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           RY++ +  +L LP++ T +  RHSFAT L  +G     I   LGH     TQIY +    
Sbjct: 262 RYLKLIGEHLHLPITLTTYVARHSFATVLKRSGVSTSIISESLGHSSEKITQIYLDSFEN 321

Query: 305 NGGDWMME 312
           +  D  M+
Sbjct: 322 SQIDAAMQ 329


>gi|282851276|ref|ZP_06260641.1| site-specific recombinase, phage integrase family [Lactobacillus
           gasseri 224-1]
 gi|282557244|gb|EFB62841.1| site-specific recombinase, phage integrase family [Lactobacillus
           gasseri 224-1]
          Length = 374

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 32/175 (18%)

Query: 155 RNSAILY----LLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------------G 194
           ++S I Y    LL   GLR SEAL+L   +I  +++ + +                    
Sbjct: 196 KDSEIAYMYFKLLSSTGLRKSEALALKWDDIDFEKNVIHVTKTINVGFNNVELIAPPKTK 255

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +  R VPL  S++  +++Y          NI   +F    G  LN      +++++ +  
Sbjct: 256 ESYRDVPLSKSLKADLMKYRS--------NIYDFVFCKANGDHLNLATPAHWLQRIYKNN 307

Query: 255 GLPLSTTAHTLRHSFATHLL--SNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNG 306
                 T H  RH+FAT +L    G   + +Q ILGH  +  T  IYT+  SK G
Sbjct: 308 SNLKQITIHGFRHTFATLMLQPGTGNTPKDVQKILGHSTIDMTLNIYTH-ESKKG 361


>gi|332291756|ref|YP_004430365.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169842|gb|AEE19097.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 407

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 27/38 (71%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +++  RHSFAT  +     L++I ++LGH RLSTTQIY
Sbjct: 349 SSYVSRHSFATQAMLQDVPLQAISAMLGHNRLSTTQIY 386


>gi|268679866|ref|YP_003304297.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268617897|gb|ACZ12262.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 390

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 84/196 (42%), Gaps = 32/196 (16%)

Query: 125 LPRALNEKQALTLV--DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           LP A+ E+++      D +    SH T ++    +  + ++   G+R  E ++LT  +I 
Sbjct: 178 LPNAMEEEESQDPFTQDEINTIMSHATGYM----ANFIKIMLSTGMRPGELVALTWTDID 233

Query: 183 DDQSTL-----RIQGKGDKI------------RIVPLLPSVRKAILEYYDLCPFDLNLNI 225
             +  +     R++    K             R + L P+  KA LE  +L  +      
Sbjct: 234 FSRKIISVNKTRLRSPRSKAVVDGPVKTNAGKRSIDLFPATEKAFLEQQELTGW------ 287

Query: 226 QLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
           Q  +F     +P  N  V     R + +   +      + LRH+FA+ L+SNG D+  + 
Sbjct: 288 QKYIFLNPSNRPFYNHDVIGVNFRNILKRSSIK-ERVLYNLRHTFASQLISNGADIVYVS 346

Query: 285 SILGHFRLSTT-QIYT 299
             LGH  +S T +IYT
Sbjct: 347 KTLGHKDVSITLKIYT 362


>gi|126669048|ref|ZP_01739983.1| hypothetical protein MELB17_11083 [Marinobacter sp. ELB17]
 gi|126626509|gb|EAZ97171.1| hypothetical protein MELB17_11083 [Marinobacter sp. ELB17]
          Length = 244

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 10/113 (8%)

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPF- 219
           Y  GLR+SE+L+LT  ++  D   +R+    GKG K R VPL     KA+  Y+      
Sbjct: 134 YSLGLRLSESLNLTIADV--DSHLMRVHVRCGKGKKDRFVPLPLMTLKALRRYWATHRHP 191

Query: 220 DLNLNIQLPLFRGI--RGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           DL      P +  +   GKP  +  G  Q+ I+Q+    G+      H+LRHS
Sbjct: 192 DLLFPGWHPPYASVATSGKPRVMARGGVQKAIKQVALDCGIRKHVHIHSLRHS 244


>gi|329936187|ref|ZP_08285980.1| phage integrase [Streptomyces griseoaurantiacus M045]
 gi|329304297|gb|EGG48177.1| phage integrase [Streptomyces griseoaurantiacus M045]
          Length = 415

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 71/172 (41%), Gaps = 37/172 (21%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--------------QGKGDKIRIV 200
           R  A++ L  GCGLR  E L +    I  D  TL +                KG K+R V
Sbjct: 205 RFRAMVDLGAGCGLRQGEILGVAVDAIDFDSDTLHVVQQLKLSRSKAVFAPPKGGKLRDV 264

Query: 201 PLLPSVRKAILEYY-DLCPFDLNLNIQLP---------LFRGIRGK-----PLNPGVFQR 245
           PL   V  A+  +  +  P ++ L  ++          +F G RG       LN  V++R
Sbjct: 265 PLPGPVADALRTHMKEFPPVEITLPWKVADGPPVTKRLIFTGPRGGHVWRTSLNEEVWKR 324

Query: 246 YIRQLRRYL----GLPLSTT----AHTLRHSFATHLLSNGGDLRSIQSILGH 289
            +           G P + +     H LRH +A+ LL  G +++++   LGH
Sbjct: 325 ALAAAGAIPVPERGRPYAESRENGMHALRHFYASVLLDAGENIKALAEYLGH 376


>gi|310830692|ref|YP_003965793.1| Integrase [Paenibacillus polymyxa SC2]
 gi|309250159|gb|ADO59725.1| Integrase [Paenibacillus polymyxa SC2]
          Length = 317

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 99/229 (43%), Gaps = 21/229 (9%)

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL---PRAL---NEKQALT-- 136
           D ++ R  S ++SF+++L +    TE        ++ SNSL   P+ L    E   +T  
Sbjct: 79  DATINRKRSSLRSFIRFLSRLNYITEDF---SSEIELSNSLAQPPQVLLTYEEINEMTKI 135

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195
           L   +    + E + +  RN      L   G+++ E L L   NI+ DQ+T+ I + K  
Sbjct: 136 LDQRIFYGKTEELRLMHRRNKVAFLTLLETGIKVWELLILKWGNILLDQNTIVIPKRKSI 195

Query: 196 KIRIVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPL---NPGVFQRYIR 248
           + R VP   S+ +    Y +    L  FD +  +   LF G    P+    P   +R   
Sbjct: 196 ETRDVPCSNSLAQEFRLYLEHMRKLKNFDPSF-LDGFLFFGAGKSPMIAITPKTIERMFD 254

Query: 249 QLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L +  G+   + T  +LRH+   + +     +  +  +LG+ R S  +
Sbjct: 255 SLAKEAGIENKNVTPQSLRHTMVHYQIGQQKSIEELTHLLGYSRKSVAK 303


>gi|32470078|ref|NP_863020.1| hypothetical protein p165897_108 [Escherichia coli]
 gi|157418271|ref|YP_001481343.1| hypothetical protein APECO1_O1CoBM187 [Escherichia coli APEC O1]
 gi|169546427|ref|YP_001711867.1| hypothetical protein pVM01_p018 [Escherichia coli]
 gi|170650826|ref|YP_001739982.1| site-specific recombinase [Escherichia coli SMS-3-5]
 gi|222104906|ref|YP_002539395.1| site specific recombinase, putative [Escherichia coli]
 gi|300825428|ref|ZP_07105500.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
 gi|300904900|ref|ZP_07122722.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|301305709|ref|ZP_07211797.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|331652482|ref|ZP_08353493.1| putative site-specific recombinase [Escherichia coli M718]
 gi|28629335|gb|AAO49615.1| Int [Escherichia coli]
 gi|88770321|gb|ABD51758.1| Int [Escherichia coli APEC O1]
 gi|168830979|gb|ACA34760.1| Int [Escherichia coli]
 gi|170522102|gb|ACB20279.1| site-specific recombinase [Escherichia coli SMS-3-5]
 gi|221589331|gb|ACM18328.1| site specific recombinase, putative [Escherichia coli]
 gi|300403180|gb|EFJ86718.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|300522110|gb|EFK43179.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
 gi|300839049|gb|EFK66809.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|312949170|gb|ADR29996.1| putative site-specific recombinase [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315252701|gb|EFU32669.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 85-1]
 gi|315297079|gb|EFU56359.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 16-3]
 gi|325495777|gb|EGC93638.1| hypothetical protein ECD227_4266 [Escherichia fergusonii ECD227]
 gi|331049588|gb|EGI21654.1| putative site-specific recombinase [Escherichia coli M718]
          Length = 246

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 81/174 (46%), Gaps = 42/174 (24%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQN-----------IMDDQSTLRIQGKG--DKIRI 199
           D R+  +   L+  G+RI EA  LTP++           I+ ++   R +G+   D++R+
Sbjct: 59  DQRHHMLFATLWNTGMRIGEARMLTPESFDLNGVRPFVRILSEKVRAR-RGRPPKDEVRL 117

Query: 200 VPL--LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL---NPGVFQRYIRQLRR-- 252
           VPL  +  VR+  +E + +              R  R +PL        + +++Q  R  
Sbjct: 118 VPLTDISYVRQ--MESWMIT------------TRPRRREPLWAVTDETMRNWLKQAVRRA 163

Query: 253 -----YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                +  +P+  T HT RHS+  H+L +    + IQ+++GH    + ++YT V
Sbjct: 164 EADGVHFSIPV--TPHTFRHSYIMHMLYHRQPRKVIQALVGHRDPRSMEVYTRV 215


>gi|315651719|ref|ZP_07904724.1| tyrosine recombinase XerC [Eubacterium saburreum DSM 3986]
 gi|315485974|gb|EFU76351.1| tyrosine recombinase XerC [Eubacterium saburreum DSM 3986]
          Length = 280

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 22/162 (13%)

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-----KGDKIRIV 200
           S+E  W        + LL   G+R SE L++TP +      T+ +       +G      
Sbjct: 104 SNEVSW-----DWFILLLAKTGMRFSEGLAITPNDFDFAHQTVSVNKTWNYKEGGGFSPT 158

Query: 201 PLLPSVRKAILEYYDLCPFDL---NLNIQLPLF---RGIRGKPLNPGVFQRYIRQLRRYL 254
               SVRK  +++  +  F      L    P+F     +    +N  +  RY ++L    
Sbjct: 159 KNKSSVRKIQIDWQVVMQFATLVKELPADEPIFVRDNNVYNSTVN-DILVRYCKKL---- 213

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            +P+  + H LRH+ A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 214 NIPV-ISVHGLRHTHASILLYAGVSIASVARRLGHASMTTTQ 254


>gi|291515411|emb|CBK64621.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 367

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +R++ +  G+    T H  RH+FAT + LS G  + ++  +LGH  + TTQIY  + ++
Sbjct: 288 LREIGKQCGIKNKLTFHLARHTFATTITLSQGMPIETVSRLLGHTNIKTTQIYAKITNE 346


>gi|320007186|gb|ADW02036.1| integrase family protein [Streptomyces flavogriseus ATCC 33331]
          Length = 548

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 107/267 (40%), Gaps = 43/267 (16%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           QL+   I AF++ +     G  +L R L+ + S L            + +  + L ++ +
Sbjct: 215 QLANRHIAAFVTSQLAVGCGRTTLYRCLATLSSAL-----------GDAVRQQRLPRTPA 263

Query: 125 LPRALN-----EKQALTLVDNV-LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            P  L+     E++  T  +    L   H+T   D   + +  +L G G+R  EAL L  
Sbjct: 264 SPPVLHRPPSPERRIWTAEEAARFLTHCHQT---DPEMADLFEVLIGTGMRKGEALGLHW 320

Query: 179 QNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCP----------------- 218
            ++  DQ  L I+      D  R+V   P  R +   +  + P                 
Sbjct: 321 NDVHLDQGVLYIRCTLSAVDNNRLVLTTPKTRSS-RGWVAISPRVAIAFRHRARSAPRAH 379

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
            D +      +F    G+PL P +    + +L    G+P   T H LRH  AT  +S G 
Sbjct: 380 GDADDPFAGLVFCRPDGRPLGPHLVLDRLHRLSEEAGVP-QVTVHDLRHLAATITISAGV 438

Query: 279 DLRSIQSILGHFRLSTTQ-IYTNVNSK 304
            L  +   L H  LSTT  +Y+++  +
Sbjct: 439 PLTVVSKTLRHSTLSTTANLYSHLTQQ 465


>gi|66045987|ref|YP_235828.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
 gi|63256694|gb|AAY37790.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
 gi|330954063|gb|EGH54323.1| Phage integrase [Pseudomonas syringae Cit 7]
          Length = 321

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 101/250 (40%), Gaps = 37/250 (14%)

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            + A ++  R       +    ++ I+  +    +  + +   +L +R++K  +      
Sbjct: 71  HVTALVATLRQDDYAPNTTSLYVNAIRGVMNEAWRHDLISHDQLLKIRSIKPVSGTRLVK 130

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
                 TL+  ++   + + +    R++AI+ +LYG G+R SE+++L    I   + +LR
Sbjct: 131 GRNIRRTLIRELMEACAADPRPQGRRDAAIIAILYGSGMRKSESVNLDLSQIDFAERSLR 190

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--RGKPLNPGVFQRYI 247
           + GKG+            K +++Y     F   LN  L L R     G+  +P +F R  
Sbjct: 191 VLGKGN------------KQLIKYAPEWAFKA-LNDWLALRRSCLPPGQGDDPFLFNRIR 237

Query: 248 R-------------------QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           R                   Q  R +G  ++   H  R SF T ++    DL   Q +  
Sbjct: 238 RGSHITRDRITKHAIYFIAKQRGRQVG--VNIMPHDFRRSFITRVIEE-FDLSIAQKLAH 294

Query: 289 HFRLSTTQIY 298
           H  +STT  Y
Sbjct: 295 HTHISTTASY 304


>gi|28895789|ref|NP_802139.1| integrase (phage associated) [Streptococcus pyogenes SSI-1]
 gi|28811038|dbj|BAC63972.1| putative integrase (phage associated) [Streptococcus pyogenes
           SSI-1]
          Length = 303

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 21/158 (13%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDD-----------QSTLRIQGKGDKI--RIVPLLP 204
           A+  LL   G+R  E L+LT  ++  +           Q  L I     K   R++ L  
Sbjct: 131 ALFRLLAFTGIRKGELLALTWDDLNGNTLSINKAVTRTQVGLEIDVTKTKSSDRLISLDD 190

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
              + +LE ++  P          +F+   G  + P + ++++ Q+ +   LP   T H 
Sbjct: 191 ETLEILLELHETFP------TSTLMFQSESGGIMTPSLPRKWLLQIIKGTDLP-QITIHG 243

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
            RH+ A+ L  +G  L+ +Q  LGH  L TT  +YT++
Sbjct: 244 FRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHI 281


>gi|332360444|gb|EGJ38255.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK355]
          Length = 360

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 104/276 (37%), Gaps = 39/276 (14%)

Query: 68  YTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL- 125
           Y   R  ++   TQ  +   ++ R+LS + S  KYL +     +      RN+ K  +  
Sbjct: 86  YLRERPLLNANTTQNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATK 145

Query: 126 -------PRALNEKQALTLVDNVLLHTSHETKWIDA-------------------RNSAI 159
                   RA N KQ L L D     T    ++ID                    R+ AI
Sbjct: 146 KKKETLAARAENIKQKLFLGD----ETEEFLQYIDTEYPKKLSNRALSSFNKNKERDLAI 201

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP- 218
           + LL   G+R+SEA++L  ++I      + +  KG K   V +    +  + +Y  +   
Sbjct: 202 IALLLASGVRLSEAVNLDLKDINLKMMVIEVTRKGGKRDSVNVAAFAKPYLEDYLSIRSK 261

Query: 219 -FDLNLNIQLPLFRGIRGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
            +              RG P  ++    ++ + +        +  T H LRH+ AT L  
Sbjct: 262 RYKAEKTDTAFFLTEYRGTPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYD 319

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTN-VNSKNGGDWM 310
                  +   LGH     T +YT+ VN +    W+
Sbjct: 320 ATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKMLWI 355


>gi|301307882|ref|ZP_07213838.1| integrase [Bacteroides sp. 20_3]
 gi|300834225|gb|EFK64839.1| integrase [Bacteroides sp. 20_3]
          Length = 407

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           Y++++ R   +      H  RH++AT + LS+G  L ++  +LGH ++ TTQIY  V  +
Sbjct: 327 YLKEIARICHIDRPLVFHAGRHTYATEITLSHGVPLETVSRMLGHSQIETTQIYAKVTDE 386


>gi|255014968|ref|ZP_05287094.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 407

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           Y++++ R   +      H  RH++AT + LS+G  L ++  +LGH ++ TTQIY  V  +
Sbjct: 327 YLKEIARICHIDRPLVFHAGRHTYATEITLSHGVPLETVSRMLGHSQIETTQIYAKVTDE 386


>gi|167896302|ref|ZP_02483704.1| integrase/recombinase [Burkholderia pseudomallei 7894]
          Length = 320

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 120/282 (42%), Gaps = 34/282 (12%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
           T ++Y      FL + A      IT +Q +   S+ E++       T+     ++K  L+
Sbjct: 40  TRRAYARAASDFLTWCADAGVSSITAVQPLHVASWVELQ-------TRTHAASTVKLRLA 92

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLK---KSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            I+    +L   ++   ++  ++R+     ++ + P  L+  +A  L+D++ + T     
Sbjct: 93  AIRHLFDWLVTGQVVPVNSAASVRSPSHTVRTGATP-VLDPAEARQLLDSIDVSTP---- 147

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL--RIQGKGDKIRIVPLLPSVRK 208
            I  R+ A++ L+     RI  AL++   ++   Q  L  R++  G K   +P   ++  
Sbjct: 148 -IGLRDRALIALMVFSFARIGAALAMRVDDVYVQQRRLWIRLRETGGKAHAMPCHHTLEM 206

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYL---------GLPL 258
           A+  Y D     +  + +  LFR I RG      + +  + Q   Y+         G+  
Sbjct: 207 ALRAYLDGT--GIVFDPKGALFRTIARG---TGQLSETTLAQANAYVMVRRRAAAAGIAT 261

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              +H LR +  T  L NGG L +  +I  H    +TQ Y +
Sbjct: 262 KIGSHALRATGITTYLRNGGTLENAAAIANHVSTRSTQRYGD 303


>gi|119025957|ref|YP_909802.1| phage integrase [Bifidobacterium adolescentis ATCC 15703]
 gi|118765541|dbj|BAF39720.1| phage integrase [Bifidobacterium adolescentis ATCC 15703]
          Length = 435

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 7/107 (6%)

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-YIRQLRRYLGL 256
           R +PL  ++   +L Y +       +N    +F   RG PL   V +R + R L R +GL
Sbjct: 317 RAIPLPEALADQLLAYIERH----GVNGDGLVFHDDRGLPLTGCVERRRWYRALDR-VGL 371

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN 302
                 H+ RH+ AT L   G D  +  +I+GH R+STT +IYT+V 
Sbjct: 372 GHEYVPHSARHTTATILNRLGLDDVTRTAIMGHSRVSTTNEIYTHVE 418


>gi|315179070|gb|ADT85984.1| phage-related integrase [Vibrio furnissii NCTC 11218]
          Length = 341

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 107/252 (42%), Gaps = 40/252 (15%)

Query: 71  IRAFISKRRTQKIGDRSLKRSL--------SGIKSFLKYLKK-------RKITTESNILN 115
           + A   K R   +  R ++R L        + I  +  +L K        +I  +S +  
Sbjct: 82  VMAAFGKERVTDVTRRDVERFLNSLTDLSHASINRYHAFLSKLFSMAVEHEIIDKSPVKG 141

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           ++   ++N+  R L+ K+A +   N       E  ++ A ++ +L LL   G+RI   +S
Sbjct: 142 VKKRVENNAKDRVLSSKEAESFCRNACA----EPNFLHA-SALMLSLL--TGMRIGNVMS 194

Query: 176 LTPQNIMDDQST--LRIQGKGDKIRIVPLLPS---VRKAI-LEYYDLCPFDLNLNIQLPL 229
           LT   + DD S+  L +   G   RI    P+   +RK + + + D     LN       
Sbjct: 195 LTRAMLADDLSSALLPMTKSGKSQRIYFSEPAKRLIRKCLKVSFNDWVFPSLN------- 247

Query: 230 FRGIRGKPLN-PGVFQRYIRQLRRYLG-LPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
               RG+ +  P      I+Q  +  G L    T H LR ++AT +L    D+R  Q  L
Sbjct: 248 ---NRGEHIAYPRACMERIQQAMKQEGCLDAPFTIHDLRRTYATQMLLATNDIRLAQQSL 304

Query: 288 GHFRLSTTQIYT 299
           GH  ++ T+ Y 
Sbjct: 305 GHSNVNVTERYA 316


>gi|315121974|ref|YP_004062463.1| integrase family protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|315122942|ref|YP_004063431.1| integrase family protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495376|gb|ADR51975.1| integrase family protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496344|gb|ADR52943.1| integrase family protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 299

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 12/147 (8%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           L L+   GLR S+ + +  Q++ D   ++  +  G ++  VP+   ++K        C  
Sbjct: 149 LELMLFLGLRRSDVIRIGKQHVKDSVLSIHTKKTGKQVH-VPIFEDLQK--------CLD 199

Query: 220 DLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
            + ++    L   I GKP +  G F  + R   +  GLP    AH LR + AT   + G 
Sbjct: 200 AVGVDRGTFLITAI-GKPFSSSGSFGNWFRDRCKEAGLPDKCRAHGLRKAGATIAANAGA 258

Query: 279 DLRSIQSILGHFRLSTTQIYT-NVNSK 304
               + ++ G  +     +YT  VNSK
Sbjct: 259 SPHELMAMFGWSKTDMADLYTREVNSK 285


>gi|294010404|ref|YP_003543864.1| putative integrase [Sphingobium japonicum UT26S]
 gi|294012980|ref|YP_003546440.1| putative integrase [Sphingobium japonicum UT26S]
 gi|294023874|ref|YP_003547193.1| putative integrase [Sphingobium japonicum UT26S]
 gi|292673734|dbj|BAI95252.1| putative integrase [Sphingobium japonicum UT26S]
 gi|292676310|dbj|BAI97828.1| putative integrase [Sphingobium japonicum UT26S]
 gi|292677654|dbj|BAI99170.1| putative integrase [Sphingobium japonicum UT26S]
          Length = 463

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 26/92 (28%)

Query: 235 GKPLNPGVFQR-YIRQLRRY--LGLPLSTTAHTLRHSFATHLLSN--------------- 276
           G P+ P  ++  + R  RR    G+P+  + H LRHSFA H+L+                
Sbjct: 346 GHPVLPNSWEAIFARASRRCTDAGIPVRLSPHQLRHSFAVHMLAMLIQRRLADAAAPVGA 405

Query: 277 --------GGDLRSIQSILGHFRLSTTQIYTN 300
                   G  L+ +Q +LGH  L+TT IY +
Sbjct: 406 MEGYRQLVGDPLQQVQRLLGHSSLATTSIYLD 437


>gi|293383666|ref|ZP_06629575.1| prophage LambdaSa03, site-specific recombinase, phage integrase
           family [Enterococcus faecalis R712]
 gi|312906214|ref|ZP_07765226.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|312909560|ref|ZP_07768415.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|291079002|gb|EFE16366.1| prophage LambdaSa03, site-specific recombinase, phage integrase
           family [Enterococcus faecalis R712]
 gi|310627860|gb|EFQ11143.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|311290233|gb|EFQ68789.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
          Length = 434

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 20/163 (12%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-------KIRIVP-LLPSVRKAILEY 213
            +Y  GLR  EA+SLT  + + ++  + + G  D         + +P  L S RK  L  
Sbjct: 258 FMYLTGLRAGEAISLTINDYVKNEHAILVNGTLDYSNGYKNATKELPKTLASFRKVELSN 317

Query: 214 YDLCPFD---LNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLG---LPLSTTA 262
             +   +   L   I+       LF G  G+P+    F   +++    LG   +  + ++
Sbjct: 318 RAVKIIEELILEREIKFKEQTNYLFVGKTGRPIQVNSFNASLKKANESLGKNKINKTISS 377

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
           H  RHS  + L      +++I   +GH    TT +IYT+V  K
Sbjct: 378 HIFRHSHISLLAELNVPVKAIMERVGHVDTETTLKIYTHVTKK 420


>gi|21910514|ref|NP_664782.1| putative integrase - phage associated [Streptococcus pyogenes
           MGAS315]
 gi|28876262|ref|NP_795429.1| putative integrase [Streptococcus pyogenes phage 315.2]
 gi|71910865|ref|YP_282415.1| integrase [Streptococcus pyogenes phage 5005.1]
 gi|21904713|gb|AAM79585.1| putative integrase - phage-associated [Streptococcus pyogenes phage
           315.2]
 gi|71853647|gb|AAZ51670.1| phi5005.1 integrase [Streptococcus pyogenes phage 5005.1]
          Length = 362

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 21/158 (13%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDD-----------QSTLRIQGKGDKI--RIVPLLP 204
           A+  LL   G+R  E L+LT  ++  +           Q  L I     K   R++ L  
Sbjct: 190 ALFRLLAFTGIRKGELLALTWDDLNGNTLSINKAVTRTQVGLEIDVTKTKSSDRLISLDD 249

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
              + +LE ++  P          +F+   G  + P + ++++ Q+ +   LP   T H 
Sbjct: 250 ETLEILLELHETFP------TSTLMFQSESGGIMTPSLPRKWLLQIIKGTDLP-QITIHG 302

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
            RH+ A+ L  +G  L+ +Q  LGH  L TT  +YT++
Sbjct: 303 FRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHI 340


>gi|317501029|ref|ZP_07959237.1| hypothetical protein HMPREF1026_01180 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316897607|gb|EFV19670.1| hypothetical protein HMPREF1026_01180 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 410

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 87/211 (41%), Gaps = 43/211 (20%)

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           EK+ALTL     L    E   +   +  ++ +++G  LR+SE + LT  ++      + +
Sbjct: 176 EKEALTLEQQEKLLKFVEQSNVYKPHLPMVQVMFGACLRVSETIGLTWSDVDMKNREIHV 235

Query: 191 QGK-----GDK--------------IRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLP-- 228
            G+     GD+              IR +P+   V  A  +  +L     L  N+++   
Sbjct: 236 GGQLVYYEGDEGYCFHDSETKTDAGIRDIPMTQMVYDAFRKQRELNLMLGLQSNVEIGGR 295

Query: 229 ---LFRGIRGKPLNPGVFQRYIRQL---------------RRYLGLPLSTTAHTLRHSFA 270
              +F    G+P+ P     +++ +               +R   L    ++HTLRH+  
Sbjct: 296 SGFIFNTKHGRPIMPAGVNSFLKNIVNAYNKKESKLAEEEKREPELMPPISSHTLRHTGC 355

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T L  N  + + +Q ++GH   S  QI  NV
Sbjct: 356 TRLGENNVNPKVMQYVMGH---SDAQITMNV 383


>gi|291534558|emb|CBL07670.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
          Length = 404

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 17/150 (11%)

Query: 159 ILYLLYGCGLRISEALSLTPQNI-MDDQSTLR-IQGKGDKIRIVPLLPSVRKAILEYYDL 216
           +L LLY  G+R  E L L  +NI +DDQ  +  ++    K RI+P+   +   I +YY+ 
Sbjct: 257 VLILLY-TGIRAEEFLILENKNIHLDDQYFITGVKTDAGKSRIIPIHNDILPIIQKYYNP 315

Query: 217 CP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
              +  + N    +++ +R +      F R ++QL       +    H  RH+ AT + +
Sbjct: 316 KKHYFWDFNGSQRIYQTLRWR------FDRLMKQLN------IDHIPHDTRHTTATAMHN 363

Query: 276 NGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
              D+  I+ ILGH     TQ +Y + N K
Sbjct: 364 ANLDIMYIKLILGHHINDITQRVYIHSNPK 393


>gi|229192133|ref|ZP_04319101.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus ATCC 10876]
 gi|228591340|gb|EEK49191.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus ATCC 10876]
          Length = 376

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 67/159 (42%), Gaps = 37/159 (23%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQ-------GKGD--------KIRIVPLLPSVRKAIL 211
           G+RI E L+L  ++I  +   + +Q       GK +          R++P+   +   +L
Sbjct: 198 GMRIGEVLALQWKDINFESKIIHVQRTLTLVDGKYELGETKTEASNRMIPMTEELMGELL 257

Query: 212 EY--------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           EY        +DL     N  I  P     + K L   +   YIR              H
Sbjct: 258 EYQSHKKDNSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYIR-------------FH 304

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
            +R +F T L+ +G + + +  +LGH  +STT  IYT+V
Sbjct: 305 DIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDV 343


>gi|218265583|ref|ZP_03478830.1| hypothetical protein PRABACTJOHN_04541 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221451|gb|EEC94101.1| hypothetical protein PRABACTJOHN_04541 [Parabacteroides johnsonii
           DSM 18315]
          Length = 200

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYT 299
           G   + ++++ R  G  +  T H  RH+ AT  LLS+G  + ++  +LGH  + TTQIY 
Sbjct: 135 GSCNKILKEIGRQCGFKVRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYA 194

Query: 300 NVNSK 304
            + ++
Sbjct: 195 KITAQ 199


>gi|145297530|ref|YP_001140371.1| phage integrase family protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850302|gb|ABO88623.1| phage integrase family protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 408

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 3/76 (3%)

Query: 229 LFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           LF G + G+PLN  V + + R L+R   +      HT RHS A  ++S+GG L  +Q+ L
Sbjct: 300 LFPGQKPGQPLN-NVTKPFNRMLKR-AQIEGQVCIHTCRHSVAALIVSSGGTLYDVQAQL 357

Query: 288 GHFRLSTTQIYTNVNS 303
           GH    ++Q Y ++++
Sbjct: 358 GHSSSQSSQRYAHLHA 373


>gi|93352541|dbj|BAE93482.1| integron integrase [uncultured bacterium]
          Length = 211

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 82/198 (41%), Gaps = 50/198 (25%)

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           N+   K+   LP  L++ +  TL+DN           +   N  I  L+YG G+R  E L
Sbjct: 26  NVVRAKRPKRLPVVLSQAEVCTLLDN-----------MSGINGLIARLIYGTGMRKMECL 74

Query: 175 SLTPQNIMDDQSTLRIQ-GKGDKIRI--------VPL---LPSVR----KAILEYYDLCP 218
            L   ++  D   + ++ GKG+K R+         PL   L +VR    K + E Y    
Sbjct: 75  RLRVTDVDFDYRQIIVRSGKGNKDRVTLLPECLCTPLREQLENVRQIHGKDLEEGYGEVG 134

Query: 219 FDLNLNIQLP----------LFRGIRGKPLNP--GVFQRY----------IRQLRRYLGL 256
               L+ + P          +F   R + ++P  GV +R+          IRQ      +
Sbjct: 135 LPFALDRKYPNAGREWKWQYVFPSTR-RSVDPLTGVIRRHHWYDTNVSRAIRQSVYNTRI 193

Query: 257 PLSTTAHTLRHSFATHLL 274
                 HTLRH FATHLL
Sbjct: 194 NKQVGVHTLRHPFATHLL 211


>gi|302186394|ref|ZP_07263067.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Pseudomonas syringae pv. syringae 642]
          Length = 321

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 105/246 (42%), Gaps = 29/246 (11%)

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            + A ++  R       +    ++ I+  +    +  + +   +L +R++K  +      
Sbjct: 71  HVTALVATLRQDDYAPNTTSLYVNAIRGVMNEAWRHDLISHDQLLKIRSIKPVSGTRLVK 130

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
                 TL+  ++   + + +    R++AI+ +LYG G+R SE+++L    I   + +LR
Sbjct: 131 GRNIRRTLIRELMEACAADPRPQGRRDAAIIAILYGSGMRKSESVNLDLSQIDFAERSLR 190

Query: 190 IQGKGDKIRIVPLLPS-VRKAILEYYDL---C--------PFDLNLNIQLPLFRGIRGKP 237
           + GKG+K +++   P    KA+ ++ +L   C        PF  N        R  RG  
Sbjct: 191 VLGKGNK-QLIKYAPEWAFKALNDWLELRRSCLQPGQGDDPFLFN--------RIRRGSH 241

Query: 238 LNPGVFQRY-----IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +      ++      +Q  R +G  ++   H  R SF T ++    DL   Q +  H  +
Sbjct: 242 ITRDRITKHAIYFIAKQRGRQVG--VNIMPHDFRRSFITRVIEE-FDLSIAQKLAHHTHI 298

Query: 293 STTQIY 298
           STT  Y
Sbjct: 299 STTASY 304


>gi|229176179|ref|ZP_04303670.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus MM3]
 gi|228607274|gb|EEK64605.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus MM3]
          Length = 322

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 127/298 (42%), Gaps = 31/298 (10%)

Query: 16  KERQNWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEEK----ITIQTIRQLSY 68
           +E +N +++  IE+   G +  TLQ Y  D R  L  +  + E K    +T + IR LS 
Sbjct: 19  QENKNLVKDFLIEKKAQGKAASTLQQYHWDLRIILFLIHQHFENKNLIELTRKDIRNLSI 78

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILN-MRNLKKSNSLP 126
                 +S  R   +        +S ++S L++         E N+ + +R L K+    
Sbjct: 79  IFQELGMSNARMNGL--------MSALRSALEFCADDDDYDYEFNVGSRVRGLPKNPVRE 130

Query: 127 -RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
              + E+Q   L+D +L     + K++ A     L L Y    R +E   +  + + +  
Sbjct: 131 ITFITEEQIEWLIDELL----KQEKYMLA---TYLALSYYSAARKNEVYQVQKEELTERY 183

Query: 186 STLRIQGK-GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
            T  ++GK G K R+    P V+K I  Y +    D   ++ + +++    K LN  VF 
Sbjct: 184 FTNVVRGKRGKKFRLY-YNPRVQKCIRLYINQRGKDTIPDLFVRVYKNGGRKLLNKSVFN 242

Query: 245 RYIRQLRRYL----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            + +   + L    G       H  RHS   +L   G  L  ++S+  H  +STTQ Y
Sbjct: 243 YWCKIFAKMLYEKEGKEFKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSY 300


>gi|124010291|ref|ZP_01694943.1| probable integrase/recombinase, putative [Microscilla marina ATCC
           23134]
 gi|123983625|gb|EAY24070.1| probable integrase/recombinase, putative [Microscilla marina ATCC
           23134]
          Length = 194

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 26/208 (12%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N+LP       +     WL+ L    G +  T + Y    R+FL FL     E+  I  +
Sbjct: 2   NSLPLYHYQSYVAGFSGWLRTL----GYAPDTCRKYPRQLREFLHFL-----EETGIVDL 52

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK--RKITTESNILNMRNLKK 121
             +    +  F +  +++     S+K   S   + L  ++K  R+ T   + L +     
Sbjct: 53  SSVDGAVVECFFTYLQSRP----SIKTGKSLSTTHLLSMQKTLRQFTRYLDALGLPGF-- 106

Query: 122 SNSLPR------ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
             +LPR      A    +  +  +   L+ +  T +   R+ A+L L YGCGLR +E   
Sbjct: 107 --ALPRLRLQGLAAQSLEVFSQAEIDGLYAACGTDFYGLRDQALLALGYGCGLRRAEVSQ 164

Query: 176 LTPQNIMDDQSTLRIQ-GKGDKIRIVPL 202
           L   ++   +  L ++ GKG K R VP+
Sbjct: 165 LEVSDLHFKKGWLEVKAGKGAKARSVPM 192


>gi|298248766|ref|ZP_06972571.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297551425|gb|EFH85291.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 348

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 13/161 (8%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAIL 211
           RN  +L L Y   LR  E  SL   +I   Q  L I+    K  + R+VP   +  +  +
Sbjct: 169 RNRVMLALAYDAALRREELCSLLTSDIDPAQRLLTIRAETTKNRRARVVPYTEATAQLYI 228

Query: 212 EYYDLCPFDLNLNIQLPLFRGI----RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
            Y  L    +    + PLF       R +P+    + + I+ +    G+ +  + HT RH
Sbjct: 229 NY--LKERRVLSRARGPLFLSDSNRNRTQPITIWTWSKVIKGIAERSGV-IQLSTHTFRH 285

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
              T L  +G D+  I +  GH  + +T  Y ++   +GG+
Sbjct: 286 LRLTDLARSGWDIHEIATFAGHRSVESTLQYIHL---SGGE 323


>gi|19704406|ref|NP_603968.1| integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|19714664|gb|AAL95267.1| Integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 290

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 117/291 (40%), Gaps = 20/291 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  LE E      T+ S   D   FL +L      K  I T+ +L    IR ++++ 
Sbjct: 12  KDFIYYLEFEENKKNNTVISIRKDLNNFLEYLN-----KKNITTLDKLDELIIREYLTEL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +   + + +  R LS IK F KYL    +  +   + +   K      + LN  +     
Sbjct: 67  KDFDLSNSTYNRRLSSIKKFYKYLINNNLKEKGKEILIEGKKSDEKKIQYLNSDEI---- 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKI 197
             +L     E  +   R+  +  LLY  G+ ++E LSL   N  ++ +    ++ K    
Sbjct: 123 -KILREEMKEESFNILRDRLMFELLYSSGMTVAELLSLGELNFNLEKREVYLLKNKIS-- 179

Query: 198 RIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           R +    + ++  L++     +    + N NI   +F       L     +R I +    
Sbjct: 180 RTLYFSQTCKEVYLKFLIVKKEKFKEENNTNI---IFVNNSNMRLTDRSVRRLINKYSEK 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             L    + +TLRHSF  ++L NG     +  +L    +    IY ++  K
Sbjct: 237 ANLQKEVSPYTLRHSFCLYMLRNGMSKEYLAKLLDLKSIGLLDIYEDLCKK 287


>gi|302391938|ref|YP_003827758.1| integrase family protein [Acetohalobium arabaticum DSM 5501]
 gi|302204015|gb|ADL12693.1| integrase family protein [Acetohalobium arabaticum DSM 5501]
          Length = 313

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 19/153 (12%)

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP- 201
           + T  +T WI  RNS  + L+   GLR SE + L  ++I   +  L I  + ++  ++P 
Sbjct: 157 IKTEQKTNWI--RNSLAIKLISYTGLRTSELIDLDYKDIDLSKRAL-IFTRNNETHLMPI 213

Query: 202 ---LLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRYL--G 255
              L+P++ + I           N+  Q  PLF   RG  +N    Q  I + R  +   
Sbjct: 214 NKELIPTLERHIQN---------NIESQNKPLFVSTRGNRMNHRSLQMVIAKYRSIIEDK 264

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           L    TA+ LR  F   LL+   +   I+SI G
Sbjct: 265 LNFKLTANNLRQLFIKTLLTITDNFDLIKSICG 297


>gi|253570838|ref|ZP_04848246.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298384171|ref|ZP_06993732.1| integrase [Bacteroides sp. 1_1_14]
 gi|251839787|gb|EES67870.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298263775|gb|EFI06638.1| integrase [Bacteroides sp. 1_1_14]
          Length = 409

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN-VNSKN 305
           +R L +  G     T H  RH+FA   +  G  L ++Q +LGH  + +TQIY   +N K 
Sbjct: 331 LRVLTQKCGCSTEITPHIGRHTFAVLAILKGMPLETLQKVLGHKSILSTQIYAELINPKV 390

Query: 306 GGD 308
           G D
Sbjct: 391 GED 393


>gi|157311136|ref|YP_001469181.1| integrase [Streptococcus phage P9]
 gi|119104285|gb|ABL61030.1| integrase [Streptococcus phage P9]
          Length = 359

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 27/149 (18%)

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-----KIRIVPLLPSVRKAILEYYD 215
           Y++   GLR +EA  LT ++I  D   + +    D       R      S+RK       
Sbjct: 194 YIIAITGLRFAEAQGLTWKDIDFDNGYVDVNKTFDYSISQNFRPTKNEQSIRK------- 246

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI---------RQLRRYLGLPLSTTAHTLR 266
             P D N    + L +  +          R           + ++R  G  L  T H+LR
Sbjct: 247 -VPIDNN---SVELLKYFKDNHYQDNKLSRICFGASNNATNKVIKRVTGRNL--TNHSLR 300

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           H++A++L++ G DL S+  +LGH  L+ T
Sbjct: 301 HTYASYLIAQGVDLISVSKLLGHENLNIT 329


>gi|156744303|ref|YP_001434432.1| integron integrase [Roseiflexus castenholzii DSM 13941]
 gi|156235631|gb|ABU60414.1| integron integrase [Roseiflexus castenholzii DSM 13941]
          Length = 318

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 27/47 (57%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
            Q+ +R+  +   +    T HT RH FATH+   G D+R++Q + GH
Sbjct: 251 LQKAVRRAAQQASVQKRVTCHTFRHRFATHVREAGDDMRTVQDLPGH 297


>gi|320139614|gb|EFW31483.1| site-specific recombinase, phage integrase family [Staphylococcus
           aureus subsp. aureus MRSA131]
          Length = 345

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 73/148 (49%), Gaps = 5/148 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+S  L+++   G R+S A ++  ++I   ++T+ I  +  K    P   S+ K+ +++ 
Sbjct: 183 RSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDER--KTDTSPRYISIAKSDMKHI 240

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                   ++    +F+   G  +N       ++   R   +P+  T+H LRH+  ++LL
Sbjct: 241 MDVISTFAISYDGYIFKEA-GSIINLHAINNALKSACRVNNIPI-ITSHALRHTHCSYLL 298

Query: 275 SNGGDLRSIQSILGHFRLS-TTQIYTNV 301
           + G  +  I   LGH  ++ TT +Y+++
Sbjct: 299 AKGVSIHYISKRLGHKNIAITTSVYSHL 326


>gi|317500868|ref|ZP_07959080.1| hypothetical protein HMPREF1026_01023 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316897748|gb|EFV19807.1| hypothetical protein HMPREF1026_01023 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 383

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS-NGG 278
           D +L + LP      G+P    + ++    L++  GLP +   H+LRHS  T+ L  N G
Sbjct: 240 DFDLVVALP-----NGRPCENRIIEKEFSLLKQKAGLP-NVVFHSLRHSSTTYKLKLNHG 293

Query: 279 DLRSIQSILGHFRLST-TQIYTNV 301
           DL+  Q   GH  +   T++Y ++
Sbjct: 294 DLKVTQGDTGHAEIDMITKVYAHI 317


>gi|315150954|gb|EFT94970.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0012]
          Length = 372

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 12/145 (8%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQS------TLRIQGKGDKIRIVPLL-PSVRKAILEYY 214
            L+  GLR+ EAL+L  +++  D        T+ ++ K +     P    S+R   L+  
Sbjct: 205 FLFMTGLRLGEALALNWEDVDFDSKVVYINKTMLVKNKREFRTTTPKTKSSIRTVSLDDE 264

Query: 215 DLCPFDLNLNIQLPL----FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            L  F++    Q PL       I G  L       ++++L     +P+    H LRHS A
Sbjct: 265 TLRLFEIWREQQSPLKINLIFSIDGGTLAKSTTHGWLKKLCDLADVPV-IKIHALRHSHA 323

Query: 271 THLLSNGGDLRSIQSILGHFRLSTT 295
           + L++   D   I+  LGH R++TT
Sbjct: 324 SMLIALKEDSLVIKERLGHSRITTT 348


>gi|294507519|ref|YP_003571577.1| Tyrosine recombinase xerD [Salinibacter ruber M8]
 gi|294343847|emb|CBH24625.1| Tyrosine recombinase xerD [Salinibacter ruber M8]
          Length = 302

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 120/285 (42%), Gaps = 37/285 (12%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  T ++Y  D + F     F   E IT   ++ +++ +IRAF+       +   + +R 
Sbjct: 13  SSQTRRAYRTDLQAF-----FSQAEGITADLVQAITHEDIRAFVETMHDLDLAAGTQRRR 67

Query: 92  LSGIKSFLKY-----LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           L+ ++SF  +     +  R      ++  M     S+S+ R+L +   L + D   L  +
Sbjct: 68  LAALRSFFDWAMTERIHDRNPARHPDVKPMPPADASSSV-RSLTK---LEVRDT--LEAA 121

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRI--QGKGDK-IRIVP 201
             +     R+ AI+       LR SE  ++  +++  +     L +  +G G++ +RI  
Sbjct: 122 GASDETGLRDQAIILTTIHAALRRSEIAAVAVEDVRPLGRYWILEVNPEGTGEEYVRIPD 181

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI----RGKPLNPGVFQRYIRQLRRYLGLP 257
            + SV   + + + L           PL+R +    RG+PL+       +R+     G+ 
Sbjct: 182 QVVSVIDNVKDQFGLTAG--------PLWRSMSNRNRGEPLSADAIYTIVRRAGTAAGVG 233

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            S T  TLR +    L ++GG   S+  I  H R   +     V+
Sbjct: 234 -SITIDTLRRT-GLRLAADGG--ASLSQIQAHGRFGNSAAAAQVH 274


>gi|256842147|ref|ZP_05547652.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298374988|ref|ZP_06984945.1| integrase [Bacteroides sp. 3_1_19]
 gi|256736463|gb|EEU49792.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298267488|gb|EFI09144.1| integrase [Bacteroides sp. 3_1_19]
          Length = 407

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           Y++++ R   +      H  RH++AT + LS+G  L ++  +LGH ++ TTQIY  V  +
Sbjct: 327 YLKEIARICHIDRPLVFHAGRHTYATEITLSHGVPLETVSRMLGHSQIETTQIYAKVTDE 386


>gi|258653761|ref|YP_003202917.1| integrase domain-containing protein SAM domain-containing protein
           [Nakamurella multipartita DSM 44233]
 gi|258556986|gb|ACV79928.1| integrase domain protein SAM domain protein [Nakamurella
           multipartita DSM 44233]
          Length = 399

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 80/178 (44%), Gaps = 19/178 (10%)

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           PRAL+E     L+  V     H+      R+ A++ +    G R SE LS+    I    
Sbjct: 195 PRALSEP----LLQRVFAALRHD------RDRALIAVALSSGARASELLSMVRNGIDVGL 244

Query: 186 STLRIQGKGDKIRI-VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
             + +  KG   R+ +PL P     I  Y    P  L  +   P++  IR +P +P  + 
Sbjct: 245 GVVSVVPKGRPGRVWIPLAPEALVLIGRYLAAQPLGLPDD---PVWMTIR-RPAHPLTYF 300

Query: 245 RYIRQLRRYLGLPLST--TAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYT 299
             +RQ+   +   L T  T H  RH+FA  LL++    L  +Q+++ H  L+T   Y+
Sbjct: 301 -AMRQVLERVNQELGTNITWHDFRHTFAHRLLADDRLSLTDVQTLMRHRSLTTLTDYS 357


>gi|210612842|ref|ZP_03289495.1| hypothetical protein CLONEX_01697 [Clostridium nexile DSM 1787]
 gi|210151395|gb|EEA82403.1| hypothetical protein CLONEX_01697 [Clostridium nexile DSM 1787]
          Length = 409

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 90/210 (42%), Gaps = 33/210 (15%)

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           N  + K S  L     EK ALT      L +  +T  +  ++   + +L   GLRISE  
Sbjct: 183 NPFDFKLSEVLENDTKEKVALTEEQEQALLSFIKTDNVYHKHYDDVLILLKTGLRISELC 242

Query: 175 SLTPQNIMD----------DQSTLRIQGKGDKI---------RIVPL----LPSVRKAIL 211
            LT   IMD          D   L+ + +G  I         R VPL    + + ++ + 
Sbjct: 243 GLT---IMDVDFIHEVVVIDHQLLKSKEQGYYIETPKTKSGTRQVPLSKETIQAFQRVMK 299

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-YIRQLRRY----LGLPLS-TTAHTL 265
           +     PF ++      LF   +GKP     +   ++R +++Y       PL   T HTL
Sbjct: 300 KRPKAEPFVIDGRGNF-LFVNQKGKPKVAIDYNMLFVRMVKKYNKHHKDSPLPHITPHTL 358

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           RH+F T L S   + + +Q I+GH  +S T
Sbjct: 359 RHTFCTRLASKNMNPKDLQYIMGHSNISIT 388


>gi|170730968|ref|YP_001776401.1| phage-related integrase [Xylella fastidiosa M12]
 gi|167965761|gb|ACA12771.1| phage-related integrase [Xylella fastidiosa M12]
          Length = 179

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 64/145 (44%), Gaps = 16/145 (11%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDL 216
           L L YG   R    L L  +   D Q  L  Q   G+    +  P++P     I ++  L
Sbjct: 23  LALAYGTLARPEAILGLW-REFADTQRRLLTQNPPGRKQTKKHRPVVP-----ICDF--L 74

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
            P+ L+++   PL     GKP+    F+   R LR    LP  T    +RH+ AT L S 
Sbjct: 75  LPWILSVD-SGPLVH-WHGKPI--ASFKTAWRALRTPADLPKDTVPKVIRHTMATELRSA 130

Query: 277 GGDLRSIQSILGH-FRLSTTQIYTN 300
           G   + IQ +LGH     TT +YT 
Sbjct: 131 GVSAQDIQGMLGHRAHGGTTDVYTK 155


>gi|148998414|ref|ZP_01825856.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|168486439|ref|ZP_02710947.1| tyrosine recombinase XerC [Streptococcus pneumoniae CDC1087-00]
 gi|168492506|ref|ZP_02716649.1| tyrosine recombinase XerC [Streptococcus pneumoniae CDC0288-04]
 gi|168493084|ref|ZP_02717227.1| tyrosine recombinase XerC [Streptococcus pneumoniae CDC3059-06]
 gi|221231872|ref|YP_002511024.1| tyrosine recombinase XerC [Streptococcus pneumoniae ATCC 700669]
 gi|225858946|ref|YP_002740456.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           70585]
 gi|307067680|ref|YP_003876646.1| integrase [Streptococcus pneumoniae AP200]
 gi|254799372|sp|C1C7D0|XERS_STRP7 RecName: Full=Tyrosine recombinase xerS
 gi|254799373|sp|B8ZQ39|XERS_STRPJ RecName: Full=Tyrosine recombinase xerS
 gi|147755811|gb|EDK62856.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|183570539|gb|EDT91067.1| tyrosine recombinase XerC [Streptococcus pneumoniae CDC1087-00]
 gi|183573317|gb|EDT93845.1| tyrosine recombinase XerC [Streptococcus pneumoniae CDC0288-04]
 gi|183576613|gb|EDT97141.1| tyrosine recombinase XerC [Streptococcus pneumoniae CDC3059-06]
 gi|220674332|emb|CAR68878.1| tyrosine recombinase XerC [Streptococcus pneumoniae ATCC 700669]
 gi|225721283|gb|ACO17137.1| tyrosine recombinase XerC [Streptococcus pneumoniae 70585]
 gi|306409217|gb|ADM84644.1| Integrase [Streptococcus pneumoniae AP200]
          Length = 356

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 103/265 (38%), Gaps = 46/265 (17%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--------PRALNEK 132
           Q +   ++ R+LS + S  KYL +     +      RN+ K  S          RA N K
Sbjct: 99  QGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIK 158

Query: 133 QALTLVDNVLLHTSHETKWID-------------------ARNSAILYLLYGCGLRISEA 173
           Q L L D     T     +ID                    R+ AI+ LL   G+R+SEA
Sbjct: 159 QKLFLGD----ETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEA 214

Query: 174 LSLTPQNI---MDDQSTLRIQGKGDKIRIV----PLLPSVRKAILEYYDLCPFDLNLNIQ 226
           ++L  +++   M      R  GK D + +     P L +      + Y     D  L   
Sbjct: 215 VNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKTDTALF-- 272

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           L L+RG+  + ++    ++ + +        +  T H LRH+ AT L         +   
Sbjct: 273 LTLYRGVPNR-IDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQ 329

Query: 287 LGHFRLSTTQIYTNVNS---KNGGD 308
           LGH     T +YT++ S   KN  D
Sbjct: 330 LGHASTQVTDLYTHIVSDEQKNALD 354


>gi|91791317|ref|YP_552267.1| phage integrase [Polaromonas sp. JS666]
 gi|91701198|gb|ABE47369.1| phage integrase [Polaromonas sp. JS666]
          Length = 734

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 78/194 (40%), Gaps = 50/194 (25%)

Query: 155 RNSAILYLLYGCGLRISEA----LSLTPQNIMD----DQSTLRIQGKGDKIRIVPLLPSV 206
           R   IL++    G+R++E     LS     ++D    D   + + GKG K+R VP+   +
Sbjct: 524 RTRLILHVALTTGMRLAEIASANLSSLGHPVVDGRPADDWVITVLGKGQKLRDVPISEKL 583

Query: 207 RKAILEY-----------------YDLCPFDLNLNIQLPLFRGIRG-----------KPL 238
              ILE+                 +DLCP  L   ++ P+  G R              L
Sbjct: 584 LSMILEHHADWRTLMKGDEARIAAFDLCP-PLVAVLEAPVRDGGRAVTDQTQLKNDNSAL 642

Query: 239 NPGVFQRYIRQLRRYLGLP----------LSTTAHTLRHSFATHLL-SNGGD--LRSIQS 285
           +     R ++   R +             L  + H LRH+FA  +L  N GD  L+  Q 
Sbjct: 643 SANALYRTLKTFFRQMARKERDEKLKARILKFSTHWLRHTFAHEVLRENDGDEGLKLAQQ 702

Query: 286 ILGHFRLSTTQIYT 299
           +LGH  ++TT  Y 
Sbjct: 703 LLGHASINTTAEYV 716


>gi|315169315|gb|EFU13332.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1341]
          Length = 372

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 12/145 (8%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQS------TLRIQGKGDKIRIVPLL-PSVRKAILEYY 214
            L+  GLR+ EAL+L  +++  D        T+ ++ K +     P    S+R   L+  
Sbjct: 205 FLFMTGLRLGEALALNWEDVDFDSKVVYINKTMLVKNKREFRTTTPKTKSSIRTVSLDDE 264

Query: 215 DLCPFDLNLNIQLPL----FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            L  F++    Q PL       I G  L       ++++L     +P+    H LRHS A
Sbjct: 265 TLRLFEIWREQQSPLKINLIFSIDGGTLAKSTTHGWLKKLCDLADVPV-IKIHALRHSHA 323

Query: 271 THLLSNGGDLRSIQSILGHFRLSTT 295
           + L++   D   I+  LGH R++TT
Sbjct: 324 SMLIALKEDSLVIKERLGHSRITTT 348


>gi|300215222|gb|ADJ79638.1| Phage integrase [Lactobacillus salivarius CECT 5713]
          Length = 381

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           I+Q+ +  G+  S T H  RH+ AT L ++G D++ +Q+ LGH  + TT  IYT+ 
Sbjct: 309 IKQIAKKAGIH-SITTHGFRHTHATLLFASGLDIKQVQARLGHSNVQTTLNIYTHA 363


>gi|80159790|ref|YP_398534.1| XerC/D family recombinase [Clostridium phage c-st]
 gi|78675380|dbj|BAE47802.1| XerC/D family recombinase [Clostridium phage c-st]
          Length = 317

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 73/341 (21%), Positives = 133/341 (39%), Gaps = 72/341 (21%)

Query: 13  ELLKERQNWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           E  K+   +L   +I+   R LS+ T+ +YE D   +  ++     +K   Q I +L+  
Sbjct: 18  EFNKDTMKYLNKYKIDMSIRELSEKTIYNYEMDLYNWFTYIL----DKQFNQCITELNED 73

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE------------SNILNMR 117
           +I  F+   + Q    R +KR ++ I +F K+L+K++I  E            ++++   
Sbjct: 74  DIMEFLYFCKQQGNNSRRMKRRMASISAFYKFLRKKRIIKENPMEFIDRPRKDTDVVTQT 133

Query: 118 NLKKS--NSLPRALNEKQALTLVDNVLLHTS--------HETKW--IDARNSAILYLLYG 165
            L K     + R L E   + L   VLL  S           KW  ID  N  I  +L  
Sbjct: 134 FLTKDQVEQIKRKLKEHGDIQLETYVLLSLSTMARVNAISNIKWEQIDFENRIISDVLEK 193

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
            G  +    +   + ++    ++R +   D                EY  +  ++     
Sbjct: 194 EGKIVDLYFNKEVKELLLQLQSIRKENNIDS---------------EYVFISKYN----- 233

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
                +G     +N     ++ +++   +G+P +   H  RHS AT L + G  +  + S
Sbjct: 234 -----KGYSN--VNTSTLSKWTKKVGEMIGVP-TLHCHDWRHSGATLLKNAGMPIERVSS 285

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
           +L H  L  T+ +              I + T   I +KDK
Sbjct: 286 LLHHEGLDVTKKFY-------------IKEDTQKMINEKDK 313


>gi|260590923|ref|ZP_05856381.1| integrase [Prevotella veroralis F0319]
 gi|260536788|gb|EEX19405.1| integrase [Prevotella veroralis F0319]
          Length = 409

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +Q  ++ LR   G+    T HT RH+FAT + L  G  + ++  +LGH  +S T+ Y  V
Sbjct: 327 YQTCLKALRLRAGISFPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKV 386

Query: 302 N 302
            
Sbjct: 387 T 387


>gi|256958170|ref|ZP_05562341.1| integrase [Enterococcus faecalis DS5]
 gi|256948666|gb|EEU65298.1| integrase [Enterococcus faecalis DS5]
 gi|315036216|gb|EFT48148.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0027]
          Length = 372

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 12/145 (8%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQS------TLRIQGKGDKIRIVPLL-PSVRKAILEYY 214
            L+  GLR+ EAL+L  +++  D        T+ ++ K +     P    S+R   L+  
Sbjct: 205 FLFMTGLRLGEALALNWEDVDFDSKVVYINKTMLVKNKREFRTTTPKTKSSIRTVSLDDE 264

Query: 215 DLCPFDLNLNIQLPL----FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            L  F++    Q PL       I G  L       ++++L     +P+    H LRHS A
Sbjct: 265 TLRLFEIWREQQSPLKINLIFSIDGGTLAKSTTHGWLKKLCDLADVPV-IKIHALRHSHA 323

Query: 271 THLLSNGGDLRSIQSILGHFRLSTT 295
           + L++   D   I+  LGH R++TT
Sbjct: 324 SMLIALKEDSLVIKERLGHSRITTT 348


>gi|302551892|ref|ZP_07304234.1| integrase [Streptomyces viridochromogenes DSM 40736]
 gi|302469510|gb|EFL32603.1| integrase [Streptomyces viridochromogenes DSM 40736]
          Length = 391

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 77/202 (38%), Gaps = 46/202 (22%)

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           + +++  S  R L  ++ L ++D               R  A+L+L+ GCGLR+ EA+++
Sbjct: 164 KEIREQKSTARRLTTREVLAMLDAA-----------PPRYRAMLWLMAGCGLRLGEAMAV 212

Query: 177 TPQNIMDDQSTLRI-------------------------QGKGDKIRIVPLLPSVRKAIL 211
           +   I     TLR+                         + +G+  R VPL P+V     
Sbjct: 213 SRDQIDFKAETLRVDFQIAEDGATESGKNSAIQRRHIKARDEGEPGRSVPLPPNV----- 267

Query: 212 EYYDLCPFDLNLNIQLP---LFRGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             ++L     N  +  P   LF  + R   L    F   I       G      AH+LRH
Sbjct: 268 -AFELRRHIKNHGVWGPERLLFPNVTRTGYLYASYFYPKIWMEALGKGQVKYCKAHSLRH 326

Query: 268 SFATHLLSNGGDLRSIQSILGH 289
            + + LL  G     +   +GH
Sbjct: 327 YYGSRLLYAGVPENDVADWMGH 348


>gi|110347034|ref|YP_665852.1| phage integrase-like SAM-like [Mesorhizobium sp. BNC1]
 gi|110283145|gb|ABG61205.1| phage integrase-like protein SAM-like protein [Chelativorans sp.
           BNC1]
          Length = 479

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 30/95 (31%)

Query: 235 GKPLNPG----VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN-------------- 276
           G+P+ P      F R  R+ R   G P++ + H LRH+FA H+L+               
Sbjct: 360 GQPVCPNSWEVAFARACRRCRAN-GFPINISPHQLRHTFAVHMLAMLIQRQLEGAASAIS 418

Query: 277 -----------GGDLRSIQSILGHFRLSTTQIYTN 300
                      G  L+ +Q +LGH  L TT +Y +
Sbjct: 419 AGPAEGYRRLLGDPLQQVQRLLGHASLETTSLYLD 453


>gi|330963829|gb|EGH64089.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 355

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 86/205 (41%), Gaps = 32/205 (15%)

Query: 113 ILNMRNLKKSNSLPRALN---EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
           +LN+R         R L+   E++ LT V+N   H++    WI       + +    G+R
Sbjct: 158 VLNIRKPSTGEGRDRRLSAEEERRLLTAVNN---HSNPMLGWI-------VRIALETGMR 207

Query: 170 ISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLC------PFDLN 222
            SE  SL    +   +  +R+   K D  R VPL     K   E +         P D +
Sbjct: 208 SSEITSLRRHQVDMKKRVVRLSDTKNDSARTVPL----SKWATETFQAALNNPIRPIDCD 263

Query: 223 LNIQLPLFRGIRGK--PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
           L     +F G  GK    +P  F +    L+  LG+P     H LRH   + L+  G   
Sbjct: 264 L-----VFFGEPGKNGKRSPYAFTKTWGLLKTKLGMP-DLRFHDLRHEAVSRLVEGGLSD 317

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKN 305
           + + +I GH  +   + YT++ +++
Sbjct: 318 QEVSAISGHKSMQMLKRYTHLRAED 342


>gi|299145657|ref|ZP_07038725.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           3_1_23]
 gi|298516148|gb|EFI40029.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           3_1_23]
          Length = 403

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 109/278 (39%), Gaps = 26/278 (9%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           + Q+Y+   R F  ++     +K +I    Q S  E   +I ++    +  R++K+    
Sbjct: 127 SFQTYKSKLRIFCEWVEQTGLDKQSICFFEQSSICEFLCYIVEK--HGVSQRTVKKYAQI 184

Query: 95  IKSFLKYLKKRKITTESN----ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           +  F  YL K K   ++N    I NM  +K   + P    E+Q L++            K
Sbjct: 185 LHGFFDYLLKVKRIIDTNPVHDIPNMGTIKDEAAKPIPDRERQLLSMY----------IK 234

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
             D +   +  + Y C +R +E   L   +I  D   + +     K R    +   R   
Sbjct: 235 EHDPQLWLVCQMEYYCAIRPNECRQLQIGDIDFDNHIITVPKDISKNRQTESVNIPR--- 291

Query: 211 LEYYDLCPFDLNLNIQLPLF-----RGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            + YD     LNL++    F      G+ GK  L    F+    ++R  L +      ++
Sbjct: 292 -QLYDYIYKILNLDMHPKDFYIFSHNGVPGKTMLGKNNFRFRFDKIRDRLNISPQYKLYS 350

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +H+    L++ G D   +Q    H  + TT+ Y   N
Sbjct: 351 FKHTGGVKLVNEGIDTWELQRHFRHKSIDTTERYIRRN 388


>gi|90962617|ref|YP_536533.1| Phage integrase [Lactobacillus salivarius UCC118]
 gi|90821811|gb|ABE00450.1| Phage integrase [Lactobacillus salivarius UCC118]
          Length = 381

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           I+Q+ +  G+  S T H  RH+ AT L ++G D++ +Q+ LGH  + TT  IYT+ 
Sbjct: 309 IKQIAKKAGIH-SITTHGFRHTHATLLFASGLDIKQVQARLGHSNVQTTLNIYTHA 363


>gi|315443040|ref|YP_004075919.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315261343|gb|ADT98084.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
          Length = 403

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 96/215 (44%), Gaps = 31/215 (14%)

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEKQALTLVDNVLLHTSHETKWID 153
           + + LKY ++     ++  L    +K+   LP +A  E++ L+  + ++L      K  D
Sbjct: 164 VGAVLKYAQRTGKVAKNVALE---IKRDEDLPEQAERERRYLSHAELLML-----AKAAD 215

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-----IQGKG--------DKIRIV 200
              +  L L Y CGLR  EA++L  +++ D   T+R     + GKG         + R V
Sbjct: 216 RFETLTLVLGY-CGLRFGEAVALRRRHVGDRVLTVRSSATAVTGKGIVESTTKTKRDRHV 274

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+   V K +   +   P D N  +    F   +G  L  G ++         +G+    
Sbjct: 275 PVPEPVWKRL---HAELPTDPNALV----FPSRKGGFLPLGEYRWAFDNACAEVGIE-GL 326

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             H LRH+ A+  +S G +++ +Q +LGH   + T
Sbjct: 327 VPHGLRHTTASLAISAGANVKVVQRLLGHATAAMT 361


>gi|312111961|ref|YP_003990277.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|311217062|gb|ADP75666.1| integrase family protein [Geobacillus sp. Y4.1MC1]
          Length = 396

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +F   +GKP++P    R  R+  + L +      H LRH+ AT L+  G  ++ +  ILG
Sbjct: 306 VFINDKGKPIDPDYLTRKFRETVKTLNVK-QINLHGLRHTAATLLMKLGVHVKIVSDILG 364

Query: 289 HFRLSTTQIY 298
           H R+  T  Y
Sbjct: 365 HSRVQVTLDY 374


>gi|288928584|ref|ZP_06422431.1| LOW QUALITY PROTEIN: integrase [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288331418|gb|EFC70002.1| LOW QUALITY PROTEIN: integrase [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 321

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 28/50 (56%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           G+    + H  RH FAT  LS G  + S+  +LGH  + TTQ+Y  + ++
Sbjct: 249 GITKDISFHCARHGFATLALSKGMPIESVSRVLGHTNIVTTQLYAKITTE 298


>gi|196047877|ref|ZP_03115055.1| transposition regulatory protein TnpA [Bacillus cereus 03BB108]
 gi|196021133|gb|EDX59862.1| transposition regulatory protein TnpA [Bacillus cereus 03BB108]
          Length = 420

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 99/219 (45%), Gaps = 32/219 (14%)

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           +G KSFL ++ + K  ++    N+  LK+     +   ++Q  T+         H T   
Sbjct: 187 NGYKSFLHHVNEGKPYSK----NILKLKEPKEKIKIFTKEQVETIY--------HST--T 232

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDD----QSTLRIQGKGD-----KIRIVPLL 203
           + R+  ++ LL+  GLRI EALSL  ++   D    +  L++  +G+     K++     
Sbjct: 233 NIRDRFLVLLLFETGLRIGEALSLFLKDFQFDAKQRKHKLKLTDRGELPNGGKLKTGSRE 292

Query: 204 PSVRKAILEYYDLCPF----DLNLN---IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
             + ++++  YD   +    D N +   + + LF    G+P+         +++ R  G+
Sbjct: 293 LEISQSLMNLYDDYLYEVIDDYNPDHNFVLVKLFGKNSGEPMTYSDVYATFKEIERKTGI 352

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            +  T H  RH+  T       +++ +Q  LGH ++ TT
Sbjct: 353 YI--TPHLFRHTHGTIYYLETKNIKMVQERLGHSQVQTT 389


>gi|220921956|ref|YP_002497257.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|219946562|gb|ACL56954.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 353

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 91/224 (40%), Gaps = 20/224 (8%)

Query: 72  RAFISKRRTQ---KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           R F++  R +   K G R     LS +     +  +R++ + + + +++ L++    PRA
Sbjct: 107 RGFVAGLRDEAQKKKGRRFANYVLSVVSVVFAHGIEREMASTNPVRDVKKLRRPKGAPRA 166

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
            N   +    D V+   S E +       A + L    G R  EALS    +      TL
Sbjct: 167 -NRPWSPEEWDAVVAAASPELR-------AAIMLGGVLGYRQGEALSAKRDSWNRAAGTL 218

Query: 189 -RIQGK-GDKIRI-VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            RI  K G  +++  P + +   A L  +      +N   Q     G RG       F R
Sbjct: 219 SRISAKSGKPVKVQAPEIVAQALAALPSHSATTLLVNSRGQPWKEDGFRGS------FFR 272

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
            IR L     +    T H LRH+ AT +   G D R+I  +LG 
Sbjct: 273 LIRTLEAEGKIADGLTFHGLRHTAATQMRQLGFDTRTIADMLGQ 316


>gi|86750236|ref|YP_486732.1| Phage integrase [Rhodopseudomonas palustris HaA2]
 gi|86573264|gb|ABD07821.1| Phage integrase [Rhodopseudomonas palustris HaA2]
          Length = 364

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 97/260 (37%), Gaps = 16/260 (6%)

Query: 45  QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK 104
           Q +  L     E+   + IR L  ++   F   R        +++ +L+ I +  ++L  
Sbjct: 96  QEVAMLQMLAREEFAQKRIRDLMVSDFADFRDARDKAGKSASTIRNNLNTISAVYEWLIH 155

Query: 105 RKITTESN-ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS--AILY 161
            K    +N I ++R  ++    P    E++ L   +  +     E      R    A+  
Sbjct: 156 EKAVDIANPIASLRKRRRGVPQPTGHRERRLLDGEEEAIAQAIEELPVDPTRRQWRALFP 215

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           LL   G+R+ EA+S+    I  D   + I   K   +R V L       +LE  D  P D
Sbjct: 216 LLLDTGMRLGEAISIECAWIRRDYGFVFIPDSKNGSVRHVALSDRAYAGLLELTDGEPAD 275

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
             +      FR        P V +   R   R          H LRH   + + + G +L
Sbjct: 276 SKV------FR------FTPWVAKDAWRNEIRVRAGCQDLRIHDLRHEALSRMAARGAEL 323

Query: 281 RSIQSILGHFRLSTTQIYTN 300
           +++    GH  ++    Y N
Sbjct: 324 KTLMRQSGHKTVAVLMRYLN 343


>gi|317470459|ref|ZP_07929847.1| phage integrase [Anaerostipes sp. 3_2_56FAA]
 gi|316901974|gb|EFV23900.1| phage integrase [Anaerostipes sp. 3_2_56FAA]
          Length = 432

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 1/39 (2%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTN 300
           H LRH+F ++LLSNG   + +Q +LGH  +STT  IY +
Sbjct: 374 HMLRHTFTSNLLSNGAAPKDVQELLGHSDVSTTMNIYAH 412


>gi|226361765|ref|YP_002779543.1| transposase [Rhodococcus opacus B4]
 gi|226240250|dbj|BAH50598.1| putative transposase [Rhodococcus opacus B4]
          Length = 374

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 82/194 (42%), Gaps = 27/194 (13%)

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-- 182
           LPR L+E +   +++++             R+ A++ L+   GLR  E L L   +I   
Sbjct: 176 LPRPLSESEVTAVLESMTC----------LRDLAMVLLMLDGGLRPGEVLGLQLGDIAYG 225

Query: 183 --------DDQSTLRIQGKGDKIRIVPLL-PSVRKAILEYY-DLCPFDLNLNIQLPLFRG 232
                    D     ++GK    R+V LL P    A+  Y     P D   N  + L  G
Sbjct: 226 RRRVTIRKRDDHPRGVRGKSRHERVVDLLDPRTLDAVNRYVLHERPVDAP-NPFVFLVGG 284

Query: 233 IRGKPLNPGVFQRYIRQL-RRYLGLPLST---TAHTLRHSFATHLLSNGGDLRSIQSILG 288
             G+   P  +   +R   RR   L L T   T H LRH+ AT +   G    ++Q  LG
Sbjct: 285 RGGRRCVPLSYAALVRMFARRLEALGLRTVDKTPHALRHTHATVMWEAGMRELALQRRLG 344

Query: 289 HFRLSTTQIYTNVN 302
           H    +T+IYT V+
Sbjct: 345 HASPESTRIYTRVS 358


>gi|225863827|ref|YP_002749205.1| prophage lambdaba02, site-specific recombinase, phage integrase
           family [Bacillus cereus 03BB102]
 gi|225786507|gb|ACO26724.1| prophage lambdaba02, site-specific recombinase, phage integrase
           family [Bacillus cereus 03BB102]
          Length = 319

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 127/298 (42%), Gaps = 31/298 (10%)

Query: 16  KERQNWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEEK----ITIQTIRQLSY 68
           +E +N +++  IE+   G +  TL+ Y  D R  L  +  + E K    +T + IR LS 
Sbjct: 16  QENKNLVKDFLIEKKAQGKAASTLKQYHWDLRIILFLIHQHFENKNLIELTRKDIRNLSI 75

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILN-MRNLKKSNSLP 126
                 +S  R   +        +S ++S L++         E N+ + +R L K+    
Sbjct: 76  IFQELGMSNARVNGL--------MSALRSALEFCADDDDYAYEFNVGSRVRGLPKNPVRE 127

Query: 127 -RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
              + E+Q   L+D +L     + K++ A     L L Y    R +E   +  + + +  
Sbjct: 128 ITFITEEQIEWLIDELL----KQEKYMLA---TYLALSYYSAARKNEVYQVQKEELTERY 180

Query: 186 STLRIQGK-GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
            T  ++GK G K R+    P V+K I  Y D    D   ++ + +++    K LN  VF 
Sbjct: 181 FTNVVRGKRGKKFRLY-YNPRVQKCIRLYIDQRGKDTIPDLFVRVYKNGERKLLNKSVFN 239

Query: 245 RYIRQLRRYL----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            + +   + L    G       H  RHS   +L   G  L  ++S+  H  +STT+ Y
Sbjct: 240 YWCKIFAKMLYEKEGKEYKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTESY 297


>gi|218129568|ref|ZP_03458372.1| hypothetical protein BACEGG_01145 [Bacteroides eggerthii DSM 20697]
 gi|217988298|gb|EEC54621.1| hypothetical protein BACEGG_01145 [Bacteroides eggerthii DSM 20697]
          Length = 121

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 263 HTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           H  RH+F TH+ LS G  + ++  ++GH  +STTQIY  V  +   + M  + +QT
Sbjct: 43  HKARHNFGTHITLSLGVPIETVSRMMGHKSISTTQIYAKVTDRKVDEDMKRLKEQT 98


>gi|7960017|gb|AAF71178.1|AF179594_1 site-specific recombinase IntI4 [Vibrio cholerae]
          Length = 230

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 8/72 (11%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206
           +D ++   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V     L P +
Sbjct: 118 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 177

Query: 207 RKAIL---EYYD 215
           ++ I     YYD
Sbjct: 178 KEQIALAKRYYD 189


>gi|270292742|ref|ZP_06198953.1| integrase/recombinase, phage integrase family [Streptococcus sp.
           M143]
 gi|270278721|gb|EFA24567.1| integrase/recombinase, phage integrase family [Streptococcus sp.
           M143]
          Length = 356

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 100/255 (39%), Gaps = 43/255 (16%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--------PRALNEK 132
           Q +   ++ R+LS + S  KYL +     +      RN+ K  S          RA N K
Sbjct: 99  QGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIK 158

Query: 133 QALTLVDNVLLHTSHETKWID-------------------ARNSAILYLLYGCGLRISEA 173
           Q L L D     T     +ID                    R+ AI+ LL   G+R+SEA
Sbjct: 159 QKLFLGD----ETEGFLTYIDQEYPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEA 214

Query: 174 LSLTPQNI---MDDQSTLRIQGKGDKIRIV----PLLPSVRKAILEYYDLCPFDLNLNIQ 226
           ++L  +++   M      R  GK D + +     P L +      + Y     D+ L   
Sbjct: 215 VNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKTDIALF-- 272

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           L L+RG+  + ++    ++ + +        +  T H LRH+ AT L         +   
Sbjct: 273 LTLYRGVPNR-IDTSSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQ 329

Query: 287 LGHFRLSTTQIYTNV 301
           LGH     T +YT++
Sbjct: 330 LGHASTQVTDLYTHI 344


>gi|224368897|ref|YP_002603059.1| hypothetical protein HRM2_17930 [Desulfobacterium autotrophicum
           HRM2]
 gi|223691614|gb|ACN14897.1| hypothetical protein HRM2_17930 [Desulfobacterium autotrophicum
           HRM2]
          Length = 365

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 10/145 (6%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            I + LY  G R  E LSLT  ++  +   L +Q    K +    LP +    +   + C
Sbjct: 214 VIKFALYS-GKRKGEVLSLTWDSVDFENHLLTLQAMNTKSKKAQSLP-LNNHCMTILERC 271

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
                L +   +F    G   N   F    +++R+  G+  S   H LRH++A++L S+G
Sbjct: 272 R---KLKVSDYVFPSTLGNYYN--TFDETWKRIRKRAGI--SIRFHDLRHTYASYLASSG 324

Query: 278 G-DLRSIQSILGHFRLSTTQIYTNV 301
             D+ +++ +LGH  +  TQ Y ++
Sbjct: 325 KVDIYTLKELLGHSTIEMTQRYAHL 349


>gi|221140347|ref|ZP_03564840.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|258452366|ref|ZP_05700376.1| phage integrase [Staphylococcus aureus A5948]
 gi|282904663|ref|ZP_06312538.1| integrase [Staphylococcus aureus subsp. aureus C160]
 gi|282909331|ref|ZP_06317147.1| phage integrase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|283958775|ref|ZP_06376221.1| integrase [Staphylococcus aureus subsp. aureus A017934/97]
 gi|284025051|ref|ZP_06379449.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           132]
 gi|304379190|ref|ZP_07361933.1| integrase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|257859953|gb|EEV82791.1| phage integrase [Staphylococcus aureus A5948]
 gi|282326899|gb|EFB57196.1| phage integrase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282594912|gb|EFB99888.1| integrase [Staphylococcus aureus subsp. aureus C160]
 gi|283789815|gb|EFC28637.1| integrase [Staphylococcus aureus subsp. aureus A017934/97]
 gi|302333670|gb|ADL23863.1| bacteriophage integrase [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302751899|gb|ADL66076.1| bacteriophage integrase [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304342236|gb|EFM08132.1| integrase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|320143657|gb|EFW35435.1| site-specific recombinase, phage integrase family [Staphylococcus
           aureus subsp. aureus MRSA177]
          Length = 345

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 73/148 (49%), Gaps = 5/148 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+S  L+++   G R+S A ++  ++I   ++T+ I  +  K    P   S+ K+ +++ 
Sbjct: 183 RSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDER--KTDTSPRYISIAKSDMKHI 240

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                   ++    +F+   G  +N       ++   R   +P+  T+H LRH+  ++LL
Sbjct: 241 MDVISTFAISYDGYIFKEA-GSIINLHAINNALKSACRVNNIPI-ITSHALRHTHCSYLL 298

Query: 275 SNGGDLRSIQSILGHFRLS-TTQIYTNV 301
           + G  +  I   LGH  ++ TT +Y+++
Sbjct: 299 AKGVSIHYISKRLGHKNIAITTSVYSHL 326


>gi|167765393|ref|ZP_02437506.1| hypothetical protein BACSTE_03781 [Bacteroides stercoris ATCC
           43183]
 gi|167697021|gb|EDS13600.1| hypothetical protein BACSTE_03781 [Bacteroides stercoris ATCC
           43183]
          Length = 412

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 26/41 (63%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T H  RHS+AT  LS G  + +I   LGH  ++TTQIY ++
Sbjct: 348 TYHMARHSYATLCLSMGVPIETISQTLGHRSITTTQIYADI 388


>gi|15927578|ref|NP_375111.1| integrase [Staphylococcus aureus subsp. aureus N315]
 gi|30043990|ref|NP_835517.1| integrase [Staphylococcus phage phiN315]
 gi|258413679|ref|ZP_05681953.1| integrase [Staphylococcus aureus A9763]
 gi|258447832|ref|ZP_05695967.1| integrase [Staphylococcus aureus A6224]
 gi|282928804|ref|ZP_06336397.1| integrase [Staphylococcus aureus A10102]
 gi|13701797|dbj|BAB43090.1| integrase [Staphylococcus aureus subsp. aureus N315]
 gi|257839632|gb|EEV64102.1| integrase [Staphylococcus aureus A9763]
 gi|257858929|gb|EEV81797.1| integrase [Staphylococcus aureus A6224]
 gi|282589539|gb|EFB94627.1| integrase [Staphylococcus aureus A10102]
 gi|285817688|gb|ADC38175.1| Integrase, phage associated [Staphylococcus phage phiN315]
 gi|312830375|emb|CBX35217.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           ECT-R 2]
          Length = 345

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 73/148 (49%), Gaps = 5/148 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+S  L+++   G R+S A ++  ++I   ++T+ I  +  K    P   S+ K+ +++ 
Sbjct: 183 RSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDER--KTDTSPRYISIAKSDMKHI 240

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                   ++    +F+   G  +N       ++   R   +P+  T+H LRH+  ++LL
Sbjct: 241 MDVISTFAISYDGYIFKEA-GSIINLQAINNALKSACRVNNIPI-ITSHALRHTHCSYLL 298

Query: 275 SNGGDLRSIQSILGHFRLS-TTQIYTNV 301
           + G  +  I   LGH  ++ TT +Y+++
Sbjct: 299 AKGVSIHYISKRLGHKNIAITTSVYSHL 326


>gi|148548062|ref|YP_001268164.1| phage integrase family protein [Pseudomonas putida F1]
 gi|148512120|gb|ABQ78980.1| phage integrase family protein [Pseudomonas putida F1]
          Length = 304

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 49/234 (20%), Positives = 101/234 (43%), Gaps = 11/234 (4%)

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALN 130
           A ++  R       S    ++ I+  +    ++ +     +L +R +K +    LP   N
Sbjct: 57  ALVAALRADGYAPNSSSLYVNAIRGVMNEAWRQGLIDHEQLLRIREVKPATGSRLPPGRN 116

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            ++  +L+  ++   + + +    R++AI+ LLYG G+R SE++ +    +  +  +L++
Sbjct: 117 LRR--SLIRELMDVCAADPRPQGVRDAAIIALLYGTGMRKSESVDIDLDQVDFEARSLQV 174

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNPG-VFQRY 246
            GKG+   +    P   + +  + +L   DL    +   F   R  RG  +    + +  
Sbjct: 175 VGKGNHQLVKYAPPWAFEKLQAWLELRRQDLPAGAEDDPFLFNRIRRGNHITRARITKHA 234

Query: 247 IRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           I  + R  G  + +    H  R +F T ++    DL   Q +  H  + TT IY
Sbjct: 235 IYYIARQRGAQVGVKIMPHDFRRAFITRVIEE-HDLSIAQKLAHHANIQTTAIY 287


>gi|315576287|gb|EFU88478.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309B]
 gi|315582779|gb|EFU94970.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309A]
          Length = 372

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 12/145 (8%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQS------TLRIQGKGDKIRIVPLL-PSVRKAILEYY 214
            L+  GLR+ EAL+L  +++  D        T+ ++ K +     P    S+R   L+  
Sbjct: 205 FLFMTGLRLGEALALNWEDVDFDSKVVYINKTMLVKNKREFRTTTPKTKSSIRTVSLDDE 264

Query: 215 DLCPFDLNLNIQLPL----FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            L  F++    Q PL       I G  L       ++++L     +P+    H LRHS A
Sbjct: 265 TLRLFEIWREQQSPLKINLIFSIDGGTLAKSTTHGWLKKLCDLADVPV-IKIHALRHSHA 323

Query: 271 THLLSNGGDLRSIQSILGHFRLSTT 295
           + L++   D   I+  LGH R++TT
Sbjct: 324 SMLIALKEDSLVIKERLGHSRITTT 348


>gi|282919848|ref|ZP_06327580.1| integrase [Staphylococcus aureus subsp. aureus C427]
 gi|282316486|gb|EFB46863.1| integrase [Staphylococcus aureus subsp. aureus C427]
          Length = 345

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 73/148 (49%), Gaps = 5/148 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+S  L+++   G R+S A ++  ++I   ++T+ I  +  K    P   S+ K+ +++ 
Sbjct: 183 RSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDER--KTDTSPRYISIAKSDMKHI 240

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                   ++    +F+   G  +N       ++   R   +P+  T+H LRH+  ++LL
Sbjct: 241 MDVISTFAISYDGYIFKKA-GSIINLQAINNALKSACRVNNIPI-ITSHALRHTHCSYLL 298

Query: 275 SNGGDLRSIQSILGHFRLS-TTQIYTNV 301
           + G  +  I   LGH  ++ TT +Y+++
Sbjct: 299 AKGVSIHYISKRLGHKNIAITTSVYSHL 326


>gi|218511150|ref|YP_002415608.1| site-specific recombinase [Escherichia coli 55989]
 gi|218359251|emb|CAU95747.1| site-specific recombinase [Escherichia coli 55989]
          Length = 246

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 40/173 (23%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRI----------QGKGDKIRIV 200
           D R+  +   L+  G+RI EA  LTP++   D  +  +RI          +   D++R+V
Sbjct: 59  DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLV 118

Query: 201 PL--LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL---NPGVFQRYIRQLRR--- 252
           PL  +  VR+  +E + +              R  R +PL        + +++Q  R   
Sbjct: 119 PLTDISYVRQ--MESWMIT------------TRPRRREPLWAVTDETMRNWLKQAVRRAE 164

Query: 253 ----YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               +  +P+  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 165 ADGVHFSIPV--TPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|20808517|ref|NP_623688.1| integrase [Thermoanaerobacter tengcongensis MB4]
 gi|34222921|sp|Q8R890|XERCL_THETN RecName: Full=Tyrosine recombinase xerC-like
 gi|20517139|gb|AAM25292.1| Integrase [Thermoanaerobacter tengcongensis MB4]
          Length = 391

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 76/180 (42%), Gaps = 34/180 (18%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----------GKGDK-------- 196
           R  A+  L +G GLR  E L L   +I  ++  LR+Q           KG++        
Sbjct: 196 RLKALFLLAFGTGLRQGELLGLKWTDIDFEKKELRVQRMIKQVTIIDEKGNRKYKTIEQI 255

Query: 197 ------IRIVPLLPSVRKAILEYYD--------LCPFDLNLNIQLPLFRGIRGKPLNPGV 242
                 IR VP+  S+   + E+ +             LN   +  +F    G  ++   
Sbjct: 256 PKTKNSIRTVPIPSSLIPMLKEHRNRQREEKLKAGSVYLNDVEKGYVFTTELGNTIDASN 315

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNV 301
             +  +++    G+P     H +RH++AT L   G  L+++  +LGH  +S T  IYT+V
Sbjct: 316 LLKTYKKILNRAGVPYRK-FHAIRHTYATKLFERGVPLKTVSELLGHSNISITANIYTHV 374


>gi|307822019|ref|ZP_07652251.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307736585|gb|EFO07430.1| integrase family protein [Methylobacter tundripaludum SV96]
          Length = 382

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 95/235 (40%), Gaps = 48/235 (20%)

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
            FL ++  +    ++N L +R  K    LPR L  +QA   V  +       + W   RN
Sbjct: 137 GFLAHVDAKGNRFQANELTLRTAK---GLPRFLLTEQAKQFVATL-------SPW---RN 183

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI----RIVPLLPSVRKAILE 212
             + YL++ CGLR  E  +L    ++ + S     GKG ++    +I P   S  + +L 
Sbjct: 184 RLMAYLMWLCGLRREEVTALN-MRVLPNPSG-HAPGKGLRMMLDAKITPTKGSKTRWVLV 241

Query: 213 YYDLCP--FDLNLNIQLP-----------------LFRGIRGKPLNPGVFQRYIRQLRRY 253
            YDL    +D  +  + P                 LF    G P++        R+    
Sbjct: 242 PYDLVVQLWDY-MVFERPRLTKLYQNKHGKDETDLLFLTEYGNPISLEGMNNTFRKASEK 300

Query: 254 LGLPLSTTAHTLRHSFATHLL-------SNGGDLRSIQSILGHFRLSTTQIYTNV 301
            G+    T H LRH+F T+         S+ G L  ++  +GH   S T++Y + 
Sbjct: 301 SGV--KCTPHMLRHTFGTYEFLRMSEHKSSDGALHWVRDRMGHSSSSITEVYIHA 353


>gi|281425380|ref|ZP_06256293.1| integrase [Prevotella oris F0302]
 gi|281400373|gb|EFB31204.1| integrase [Prevotella oris F0302]
          Length = 186

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 261 TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           T H  RH+ AT + LSNG  + S+ S+LGH  +S+TQIY  + ++
Sbjct: 116 TWHMARHTMATVVCLSNGMPIESVSSVLGHKCISSTQIYAKITNE 160


>gi|257891971|ref|ZP_05671624.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|257828331|gb|EEV54957.1| phage integrase [Enterococcus faecium 1,231,410]
          Length = 344

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 90/204 (44%), Gaps = 31/204 (15%)

Query: 124 SLPRALNEKQALTLVD-NVLLHTSHE-TKWIDA-RNSA-----ILYLLYGCGLRISEALS 175
           S+PR     +AL + D N+  +T  E  ++++A RN          LL   G+R  EA +
Sbjct: 113 SIPRG----EALDIEDKNIEFYTKEELIEFLEAIRNDDDERYLFFSLLAFTGIRKGEAFA 168

Query: 176 LTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSV----RKAILE---------YYDLCPF 219
           LT  +I     TL I     +G + R++   P      RK  L+         YY     
Sbjct: 169 LTWSDIDFKSKTLNINKTVTRGYQGRLIVNTPKSKSGKRKIYLDNDLISLLRKYYTKNKT 228

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLSTTAHTLRHSFATHLLSNGG 278
            + +  +  +F    G   NP V + ++  + + +  L    T H  RH+ A+ L  +G 
Sbjct: 229 IVTIQSENLIFHH-DGLLYNPTVSRSWLNVIYKHHPELTKRITTHGFRHTHASLLFESGA 287

Query: 279 DLRSIQSILGHFRLSTT-QIYTNV 301
            L+ +Q  LGH  + TT  IYT+V
Sbjct: 288 SLKDVQERLGHADIQTTSNIYTHV 311


>gi|271966967|ref|YP_003341163.1| Site-specific recombinase XerD-like protein [Streptosporangium
           roseum DSM 43021]
 gi|270510142|gb|ACZ88420.1| Site-specific recombinase XerD-like protein [Streptosporangium
           roseum DSM 43021]
          Length = 373

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 97/217 (44%), Gaps = 17/217 (7%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITT--ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           ++ R LS + S   Y  +R+I     ++ +    +    + P A   ++A  LVD     
Sbjct: 146 TVARRLSSLSSLYGYALRRRIVAVNPADPVERPEVSTVGTTP-ARTVEEATALVDG---- 200

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPL 202
            +         ++A + LL  C +R+ E ++LT  ++  D   + +  + +G K+  +P+
Sbjct: 201 -AETIAAAYPADAAAVALLSVCAVRVGELVALTVGSVAADAGHTVILFRRRGGKVDRLPV 259

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTT 261
            P VR A+LE     P   + +   PLF    G+P +       +R+     G+ P   T
Sbjct: 260 PPRVR-ALLE-----PLLADRSPGEPLFVRKDGRPFDRWRMTTALRRAATAAGVDPTKLT 313

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            HT R + AT  L  G  L  +Q +LGH    TTQ Y
Sbjct: 314 PHTARATAATAALDAGVPLADVQELLGHASPVTTQRY 350


>gi|153815592|ref|ZP_01968260.1| hypothetical protein RUMTOR_01828 [Ruminococcus torques ATCC 27756]
 gi|145847023|gb|EDK23941.1| hypothetical protein RUMTOR_01828 [Ruminococcus torques ATCC 27756]
          Length = 397

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 89/207 (42%), Gaps = 27/207 (13%)

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           N  + K S  L     EK ALT      L +  +T  +  +    + +L   GLRISE  
Sbjct: 171 NPFDFKLSEVLENDTKEKVALTEEQEQALLSFIKTDNVYHKYYDDVLILLKTGLRISELC 230

Query: 175 SLTPQNI-------MDDQSTLRIQGKG---------DKIRIVPL----LPSVRKAILEYY 214
            LT  +I       + D   L+ + +G           IR VPL    + + ++ + +  
Sbjct: 231 GLTVADIDFKNEVVIIDHQLLKSKEQGYYIETPKTKSGIRQVPLSRETIQAFQRVMKKRP 290

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-YIRQLRRY----LGLPLS-TTAHTLRHS 268
              PF ++      LF   +GKP     +   ++R +++Y       PL   T HTLRH+
Sbjct: 291 KAEPFVIDGRGNF-LFVNQKGKPKVAIDYNMLFVRMVKKYNKHHKDNPLPHITPHTLRHT 349

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTT 295
           F T L S   + + +Q I+GH  +S T
Sbjct: 350 FCTRLASKNMNPKDLQYIMGHSNISIT 376


>gi|99080617|ref|YP_612771.1| phage integrase [Ruegeria sp. TM1040]
 gi|99036897|gb|ABF63509.1| phage integrase [Ruegeria sp. TM1040]
          Length = 334

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 102/241 (42%), Gaps = 30/241 (12%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           Q++ +  R +++ R  +     ++   L  ++S +++  K +I  ++   ++    K   
Sbjct: 96  QITTSLCRKYVTNRTAEGKSQGTIHTELGHLRSAMRFAVKERIIDKAP--SIERPAKPTP 153

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI-LYLLYGCGLRISEALSLTPQNIMD 183
             R L +++   L+D              A + A+ ++LL+    RI   L LT   +  
Sbjct: 154 KERYLEKEEIAALIDAA-----------SAPHIALAIHLLFATAGRIGAVLDLTWDRVDF 202

Query: 184 DQSTLRIQGKGDKIR----IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
            +  + ++    K R    IVP+   +R A+   +D    D  +      + G + K + 
Sbjct: 203 QRGIINLRLDDSKTRKGRAIVPMNSGIRAALQTAHDAALSDYVVE-----YAGGKVKNIR 257

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIY 298
            G F+   R  R  L      T HT+RHS A  ++SNG  L  +   LGH  ++ T Q Y
Sbjct: 258 KG-FEAACR--RAELD---GVTLHTIRHSSAVAMVSNGVPLEKVAQYLGHSNVAITYQTY 311

Query: 299 T 299
            
Sbjct: 312 A 312


>gi|322378313|ref|ZP_08052784.1| putative tyrosine recombinase XerC [Streptococcus sp. M334]
 gi|321280746|gb|EFX57775.1| putative tyrosine recombinase XerC [Streptococcus sp. M334]
          Length = 209

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 85/199 (42%), Gaps = 22/199 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L   +  + LS  T+++Y+ D  QF      Y  +           +  + ++I     
Sbjct: 9   YLDYCKTHKRLSSHTIRAYKNDLMQF------YNSD-----------HDNVESYIEHLTQ 51

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALN----EKQAL 135
             I   +L+R ++ +K F  YLK + I  E+    +R   +    LP+ +     +   +
Sbjct: 52  SNIKTNTLRRKIACMKVFYNYLKYQNIIEENPFNQLRFQFRTEKVLPKTIPHDILKSIFI 111

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L   V++  +   K    RN  I+ LL   G+RISE   +  ++I     TL I GKG 
Sbjct: 112 YLEQKVIVSKTDYQKQHAERNLLIISLLLSTGIRISELCHIRLKDINLSNKTLHIIGKGK 171

Query: 196 KIRIVPLLPSVRKAILEYY 214
           K RI+ L       +LE Y
Sbjct: 172 KERILFLGDQTTFNLLETY 190


>gi|207743147|ref|YP_002259539.1| tyrosine recombinase protein [Ralstonia solanacearum IPO1609]
 gi|206594544|emb|CAQ61471.1| probable tyrosine recombinase protein [Ralstonia solanacearum
           IPO1609]
          Length = 173

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 54/133 (40%), Gaps = 18/133 (13%)

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNP 240
           D   L + GKG +   V L P  R AI  Y     L       + + P+  G+   P   
Sbjct: 21  DDHWLNLVGKGSRAGKVALPPLARAAIDRYLVERGLPITRARWDPKTPMIGGLGLDPNGS 80

Query: 241 GVFQRYIRQLRRYL---------GLPL------STTAHTLRHSFATHLLSNGGDLRSIQS 285
               R    +RR+            PL        + H +RH+ ATH L+ G +L +++ 
Sbjct: 81  ITGTRLWSVVRRFFWSAAEIIDSDHPLLAEKLRKASPHWMRHTHATHALARGAELTTVRD 140

Query: 286 ILGHFRLSTTQIY 298
            L H  +STT IY
Sbjct: 141 NLRHASVSTTSIY 153


>gi|169346819|ref|ZP_02865770.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium perfringens C str. JGS1495]
 gi|169297101|gb|EDS79223.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium perfringens C str. JGS1495]
          Length = 379

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
           H LRH+ AT LL  G + + IQ  LGH +LSTT   Y++V +K
Sbjct: 321 HALRHTHATMLLEGGANFKDIQKRLGHSKLSTTMDTYSHVTNK 363


>gi|258454466|ref|ZP_05702433.1| integrase [Staphylococcus aureus A5937]
 gi|437117|gb|AAA91615.1| integrase [Staphylococcus phage phi-42]
 gi|257863323|gb|EEV86084.1| integrase [Staphylococcus aureus A5937]
          Length = 345

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 73/148 (49%), Gaps = 5/148 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+S  L+++   G R+S A ++  ++I   ++T+ I  +  K    P   S+ K+ +++ 
Sbjct: 183 RSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDER--KTDTSPRYISIAKSDMKHI 240

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                   ++    +F+   G  +N       ++   R   +P+  T+H LRH+  ++LL
Sbjct: 241 MDVISTFAISYDGYIFKEA-GSIINLQAINNALKSACRVNNIPI-ITSHALRHTHCSYLL 298

Query: 275 SNGGDLRSIQSILGHFRLS-TTQIYTNV 301
           + G  +  I   LGH  ++ TT +Y+++
Sbjct: 299 AKGVSIHYISKRLGHKNIAITTSVYSHL 326


>gi|329573454|gb|EGG55062.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1467]
          Length = 320

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 12/145 (8%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQS------TLRIQGKGDKIRIVPLL-PSVRKAILEYY 214
            L+  GLR+ EAL+L  +++  D        T+ ++ K +     P    S+R   L+  
Sbjct: 153 FLFMTGLRLGEALALNWEDVDFDSKVVYINKTMLVKNKREFRTTTPKTKSSIRTVSLDDE 212

Query: 215 DLCPFDLNLNIQLPL----FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            L  F++    Q PL       I G  L       ++++L     +P+    H LRHS A
Sbjct: 213 TLRLFEIWREQQSPLKINLIFSIDGGTLAKSTTHGWLKKLCDLADVPV-IKIHALRHSHA 271

Query: 271 THLLSNGGDLRSIQSILGHFRLSTT 295
           + L++   D   I+  LGH R++TT
Sbjct: 272 SMLIALKEDSLVIKERLGHSRITTT 296


>gi|225856836|ref|YP_002738347.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           P1031]
 gi|254799377|sp|C1CKQ9|XERS_STRZP RecName: Full=Tyrosine recombinase xerS
 gi|225724947|gb|ACO20799.1| tyrosine recombinase XerC [Streptococcus pneumoniae P1031]
          Length = 356

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 100/255 (39%), Gaps = 43/255 (16%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--------PRALNEK 132
           Q +   ++ R+LS + S  KYL +     +      RN+ K  S          RA N K
Sbjct: 99  QGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIK 158

Query: 133 QALTLVDNVLLHTSHETKWID-------------------ARNSAILYLLYGCGLRISEA 173
           Q L L D     T+    +ID                    R+ AI+ LL   G+R+SEA
Sbjct: 159 QKLFLGD----ETAGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEA 214

Query: 174 LSLTPQNI---MDDQSTLRIQGKGDKIRIV----PLLPSVRKAILEYYDLCPFDLNLNIQ 226
           ++L  +++   M      R  GK D + +     P L +      + Y     D  L   
Sbjct: 215 VNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKTDTALF-- 272

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           L L+RG+  + ++    ++ + +        +  T H LRH+ AT L         +   
Sbjct: 273 LTLYRGVPNR-IDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQ 329

Query: 287 LGHFRLSTTQIYTNV 301
           LGH     T +YT++
Sbjct: 330 LGHASTQVTDLYTHI 344


>gi|146279751|ref|YP_001169909.1| hypothetical protein Rsph17025_3738 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557992|gb|ABP72604.1| hypothetical protein Rsph17025_3738 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 384

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 75/152 (49%), Gaps = 19/152 (12%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV----PLLPSVRKAILE 212
           +A L +L GC  R++E +SL    +  D   LR+       ++V    P++  +R A  +
Sbjct: 230 AARLLILTGC--RLNEIISLKWSYVDFDVPALRLPDSKTGAKVVHVGQPVVELLRDA--Q 285

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
             D  P+ +     LP      GKPL+    Q + +++R   G+      H LRH+FA+ 
Sbjct: 286 RIDGNPWVIAGT--LP------GKPLSD--LQPFWQRVRARAGVK-DVRIHDLRHTFAST 334

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            +++G  L  I  +LGH ++ TT  Y ++ ++
Sbjct: 335 AVASGQGLPMIGKLLGHTQVQTTARYAHLAAE 366


>gi|302864521|ref|YP_003833158.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
 gi|302567380|gb|ADL43582.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
          Length = 383

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +F    G  + P    R   QLR   GL      H LRH+FAT LL  G +LR++  +LG
Sbjct: 289 VFASTIGTAMEPRNVNRRFEQLRAAAGLDW-LHLHDLRHAFATFLLDQGEELRTVMELLG 347

Query: 289 HFRLS-TTQIYTNV 301
           H  +  T   Y +V
Sbjct: 348 HSTIRMTADTYGHV 361


>gi|238061742|ref|ZP_04606451.1| integrase [Micromonospora sp. ATCC 39149]
 gi|237883553|gb|EEP72381.1| integrase [Micromonospora sp. ATCC 39149]
          Length = 481

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR-LS 293
           G PL+PG      R L +  G+P     H LRH  A+     G DL+++Q +LGH   L 
Sbjct: 346 GSPLHPGYASGRFRLLIKRTGVP-PVRLHDLRHGAASLAHEAGADLKTLQDMLGHSSILV 404

Query: 294 TTQIYTNV 301
           T   YT+V
Sbjct: 405 TADTYTSV 412


>gi|149930796|ref|YP_001294704.1| w0040 [Escherichia coli]
 gi|260718977|ref|YP_003225118.1| putative recombinase [Escherichia coli O103:H2 str. 12009]
 gi|291285926|ref|YP_003502743.1| w0040 [Escherichia coli O55:H7 str. CB9615]
 gi|37695784|gb|AAR00446.1|AF401292_48 w0040 [Escherichia coli]
 gi|257762488|dbj|BAI33984.1| putative recombinase [Escherichia coli O103:H2 str. 12009]
 gi|290765799|gb|ADD59759.1| w0040 [Escherichia coli O55:H7 str. CB9615]
          Length = 246

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 40/173 (23%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQS------------TLRIQGKGDKIRIV 200
           D R+  +   L+  G+RI EA  LTP++   D +              R +   D++R+V
Sbjct: 59  DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGARPFVRILSEKVRARRGRPPKDEVRLV 118

Query: 201 PL--LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL---NPGVFQRYIRQLRR--- 252
           PL  +  VR+  +E + +              R  R +PL        + +++Q  R   
Sbjct: 119 PLTDISYVRQ--MESWMIT------------TRPRRREPLWAVTDETMRNWLKQAVRRAE 164

Query: 253 ----YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               +  +P+  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 165 ADGVHFSIPV--TPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|30908756|gb|AAP37610.1| IntI [uncultured bacterium]
          Length = 159

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 64/159 (40%), Gaps = 37/159 (23%)

Query: 162 LLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAI---LEY---- 213
           LLYG G+RI E + L  +++ +     L   GKG K R+  L  S+   +   LE+    
Sbjct: 1   LLYGSGMRILEGVRLRVKDLDLARGEVLVRDGKGGKDRVTVLPRSLEGPLKLQLEFARTL 60

Query: 214 ---------------------YDLCPFDLNLNIQLPLFR-------GIRGKP-LNPGVFQ 244
                                Y     +       P  R       GIR +  L+    Q
Sbjct: 61  HAKDLADGFGSVYLPNALERKYPSASREWAWQYVFPADRISVDPRSGIRRRHHLDEQWVQ 120

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
           R +R   R  G+    T HTLRHS ATHLL  G D+R++
Sbjct: 121 RAMRYSLRATGIAKPATRHTLRHSVATHLLEAGYDIRTV 159


>gi|16519920|ref|NP_444040.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
 gi|2497419|sp|P55635|Y4RB_RHISN RecName: Full=Putative integrase/recombinase y4rB
 gi|2182599|gb|AAB92468.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
          Length = 314

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 68/157 (43%), Gaps = 19/157 (12%)

Query: 161 YLLYG----CGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYD 215
           Y L+G     GLR+ EA +L   ++  D + L I+G K  K R+VP+  S    + +Y  
Sbjct: 135 YCLFGLLSVSGLRLGEARNLKLADVDFDAAVLTIRGTKFGKSRLVPMHASTCAVLRDYLK 194

Query: 216 LCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-----HTLRHSF 269
                       P LF    G  L+ G   R    L R +GL  +T +     H +RH F
Sbjct: 195 RRRQHCAAQAASPYLFTSQLGNRLDVGDIHRTFYALSRQIGLRGATDSHGPRLHDMRHVF 254

Query: 270 ATHLLSNGGD--------LRSIQSILGHFRLSTTQIY 298
           AT+ L    +        L  + + LGH  ++ TQ Y
Sbjct: 255 ATNTLVRWYEAEQDPERLLPILSTYLGHVHVADTQWY 291


>gi|295102865|emb|CBL00410.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 387

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 4/77 (5%)

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           G   +P+ P  +++ IR   +   L  +   H LRH+FAT  L  G D++++  +LGH  
Sbjct: 285 GTESRPVEPRCYRKSIRCYLKRSAL-RTIHPHVLRHTFATTCLQAGCDIKTLSELLGHAN 343

Query: 292 LSTT---QIYTNVNSKN 305
            + T    +++++N K 
Sbjct: 344 ANVTLQRYVHSDLNRKQ 360


>gi|154150049|ref|YP_001403667.1| phage integrase family protein [Candidatus Methanoregula boonei
           6A8]
 gi|153998601|gb|ABS55024.1| phage integrase family protein [Methanoregula boonei 6A8]
          Length = 424

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 77/179 (43%), Gaps = 22/179 (12%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           +R+ AI+ +LY   LR  E  +L    ++  D  +T+ ++ K +K R++PL    R+ + 
Sbjct: 174 SRDRAIIAVLYDGALRCGELGTLRWNQVVFTDVDATITVKFKTEKTRLIPLF-MAREYLA 232

Query: 212 EYYDLCPFD-LNLNIQLPLFRGIRGKP----LNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           ++ +  P + +  N       G R +     L      + IR +    G+    T H  R
Sbjct: 233 QWRNDYPGEPIGENFVFLTSGGGRNRTGRNQLQYSGIAKQIRNIAERAGIKKHITPHLFR 292

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           HS  THL+ +G    S+  +LG    ST             D M + Y    PS  +K+
Sbjct: 293 HSKITHLIQDGCQ-ESMIKLLGWGHTST-------------DMMDKCYGHVGPSDVKKE 337


>gi|220909513|ref|YP_002484824.1| integrase family protein [Cyanothece sp. PCC 7425]
 gi|219866124|gb|ACL46463.1| integrase family protein [Cyanothece sp. PCC 7425]
          Length = 498

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 87/206 (42%), Gaps = 32/206 (15%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL---LYGCGLRISEALSL 176
           K+S +LPR + E     ++D ++ H       +D     ++ +   +  CG+R+SE L L
Sbjct: 177 KRSKALPRYIPE----CVMDQLMSH-------VDDLPEPVMRMTLVISECGMRVSELLYL 225

Query: 177 TPQNIMDDQST---LRI-QGKGDKIRIVP-------LLPSVRKAILEYY-DLCPFDLNLN 224
            P  ++ D++    LR  Q K  K   +P       ++   R+ I E+  D   +    +
Sbjct: 226 KPDCLLQDKAGDWFLRYYQFKMKKEITIPVSREIVRIIQEQRRYIQEHLGDSYEYLFCSS 285

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST------TAHTLRHSFATHLLSNGG 278
           +  P     R KP+    F R++  L     +   +        H  RH+  T +++NG 
Sbjct: 286 LSGPSGFRPRPKPMIRESFARFLNDLAEKHNICDESGKLWRFQTHQFRHTVGTRMINNGV 345

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSK 304
               IQ  LGH     T +Y  ++ +
Sbjct: 346 PQHIIQRYLGHESPEMTAVYAQIHDQ 371


>gi|265766721|ref|ZP_06094550.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263253098|gb|EEZ24574.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 415

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           IR + +  G+    T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY + 
Sbjct: 355 IRAVAKRCGITKHITWHQSRHTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYASA 410


>gi|237710116|ref|ZP_04540597.1| LOW QUALITY PROTEIN: transposase [Bacteroides sp. 9_1_42FAA]
 gi|229455578|gb|EEO61299.1| LOW QUALITY PROTEIN: transposase [Bacteroides sp. 9_1_42FAA]
          Length = 225

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 31/182 (17%)

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP---QNIMDDQ 185
           L +K+  TL+D ++ +T HE      R+  +  +    GL  S+  +LT    Q   D  
Sbjct: 39  LTQKEIQTLMDALMKNTYHEL----VRDLFVFSVF--TGLAYSDVKNLTADRLQTFFDGN 92

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNP 240
             +  + K         L  V K I+E Y     D C F +  N                
Sbjct: 93  LWIITRRKKTNTESNIRLLDVPKRIIEKYRGLTKDGCVFPVPSN---------------- 136

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYT 299
           G + + ++++ +  G  +  T H  RH+ AT  LLS+G  + ++  +LGH  + TT IY 
Sbjct: 137 GSYNKILKEIGKQCGFKVRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTPIYA 196

Query: 300 NV 301
            +
Sbjct: 197 KI 198


>gi|148268476|ref|YP_001247419.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150394539|ref|YP_001317214.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|257793278|ref|ZP_05642257.1| integrase [Staphylococcus aureus A9781]
 gi|258419785|ref|ZP_05682748.1| phage integrase [Staphylococcus aureus A9719]
 gi|147741545|gb|ABQ49843.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149946991|gb|ABR52927.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|257787250|gb|EEV25590.1| integrase [Staphylococcus aureus A9781]
 gi|257844196|gb|EEV68582.1| phage integrase [Staphylococcus aureus A9719]
 gi|315128690|gb|EFT84692.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|329728069|gb|EGG64512.1| site-specific recombinase, phage integrase family [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 345

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 73/148 (49%), Gaps = 5/148 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+S  L+++   G R+S A ++  ++I   ++T+ I  +  K    P   S+ K+ +++ 
Sbjct: 183 RSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDER--KTDTSPRYISIAKSDMKHI 240

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                   ++    +F+   G  +N       ++   R   +P+  T+H LRH+  ++LL
Sbjct: 241 MDVISTFAISYDGYIFKEA-GSIINLQAINNALKSACRVNNIPI-ITSHALRHTHCSYLL 298

Query: 275 SNGGDLRSIQSILGHFRLS-TTQIYTNV 301
           + G  +  I   LGH  ++ TT +Y+++
Sbjct: 299 AKGVSIHYISKRLGHKNIAITTSVYSHL 326


>gi|333023266|ref|ZP_08451330.1| hypothetical protein STTU_0770 [Streptomyces sp. Tu6071]
 gi|332743118|gb|EGJ73559.1| hypothetical protein STTU_0770 [Streptomyces sp. Tu6071]
          Length = 392

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 35/164 (21%)

Query: 167 GLRISEALSLTPQNIMDDQSTLR-----IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           GLR  E   L P+++++ +  +R     I GKG +I  V    S+R   +          
Sbjct: 169 GLRQGELFGLEPEHVLEGEILVRQQLSVIDGKGVRIAPVKTATSLRGVPVPAAVTDAVGA 228

Query: 222 NLNIQLP--------------------LFRGIRGKPL--NPG--VFQRYIRQLRRYLG-- 255
            +  Q P                    +F    G+P+  +P   V+ + +++    L   
Sbjct: 229 RIKAQPPVAQLMADTTSGKRRERLVRLIFTTPSGEPVQRSPWARVWAKIVKRANEILAAQ 288

Query: 256 ----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
               LP   T HTLRH++A+ L+  G  ++ +Q  LGH   + T
Sbjct: 289 GEQPLPAKVTLHTLRHTYASLLIKEGESVKVVQKRLGHSSAAIT 332


>gi|332878412|ref|ZP_08446134.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332683632|gb|EGJ56507.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 187

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 7/96 (7%)

Query: 215 DLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRY---IRQLRRYLGLPLSTTAHTLRHSF 269
           D+   D+ L I L  +RG+R  GK      +      IR +    G+    T H  RH+ 
Sbjct: 69  DIKMLDIPLKI-LAKYRGLREDGKIFTVPHYVTCLHGIRAVATRCGIEKHITWHMSRHTM 127

Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           AT + L+NG  + ++ SILGH  ++TTQ+Y  +  +
Sbjct: 128 ATEVCLTNGVPIETVSSILGHKNITTTQVYAKMTKE 163


>gi|325268476|ref|ZP_08135106.1| integrase [Prevotella multiformis DSM 16608]
 gi|324989004|gb|EGC20957.1| integrase [Prevotella multiformis DSM 16608]
          Length = 414

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 24/40 (60%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           H  RH+F T  LS G  + SI  ++GH  +S+TQIY  V 
Sbjct: 350 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVT 389


>gi|323191602|gb|EFZ76860.1| resolvase [Escherichia coli RN587/1]
          Length = 246

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 40/173 (23%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRI----------QGKGDKIRIV 200
           D R+  +   L+  G+RI EA  LTP++   D  +  +RI          +   D++R+V
Sbjct: 59  DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLV 118

Query: 201 PL--LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL---NPGVFQRYIRQLRR--- 252
           PL  +  VR+  +E + +              R  R +PL        + +++Q  R   
Sbjct: 119 PLTDISYVRQ--MESWMIT------------TRPRRREPLWAVTDETMRNWLKQAVRRAE 164

Query: 253 ----YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               +  +P+  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 165 ADGVHFSIPV--TPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|257426155|ref|ZP_05602571.1| phage integrase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257437048|ref|ZP_05613089.1| phage integrase [Staphylococcus aureus subsp. aureus M876]
 gi|257271063|gb|EEV03232.1| phage integrase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257283642|gb|EEV13768.1| phage integrase [Staphylococcus aureus subsp. aureus M876]
          Length = 349

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 73/148 (49%), Gaps = 5/148 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+S  L+++   G R+S A ++  ++I   ++T+ I  +  K    P   S+ K+ +++ 
Sbjct: 191 RSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDER--KTNTSPRYISIAKSDMKHI 248

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                   ++    +F+   G  +N       ++   R   +P+  T+H LRH+  ++LL
Sbjct: 249 MDVISTFAISYDGYIFKEA-GSIINLHAINNALKSACRVNNIPI-ITSHALRHTHCSYLL 306

Query: 275 SNGGDLRSIQSILGHFRLS-TTQIYTNV 301
           + G  +  I   LGH  ++ TT +Y+++
Sbjct: 307 AKGVSIHYISKRLGHKNIAITTSVYSHL 334


>gi|221632087|ref|YP_002521308.1| tyrosine recombinase xerC [Thermomicrobium roseum DSM 5159]
 gi|221156927|gb|ACM06054.1| tyrosine recombinase xerC [Thermomicrobium roseum DSM 5159]
          Length = 357

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 33/169 (19%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           MEGN       F L +    WL       G    T ++Y  D R+FL  L          
Sbjct: 1   MEGN-------FSLTRTIDEWLA------GRPAATRRAYAHDVREFLAALG--------- 38

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRN 118
             + QL  T +R +++    +++   +++R L+ ++SFL+YL +R       S+++    
Sbjct: 39  GELAQLDETALRRWLATFEHRRLARATVRRKLAAVRSFLRYLAERGYLERDLSSVVPAAF 98

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
            K  +  PR    ++   L   + L         D R   +L+ L GCG
Sbjct: 99  GKPPDQTPRVHATERGRLLATALQL--------ADPRLQLLLW-LAGCG 138


>gi|94442252|dbj|BAE93625.1| integron integrase [uncultured bacterium]
          Length = 211

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 83/198 (41%), Gaps = 50/198 (25%)

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           N+   K+   LP  L++ +  TL+DN           + + N  I  L+YG G+R  E L
Sbjct: 26  NVVRAKRPKRLPVVLSQAEVCTLLDN-----------MSSINGLIARLIYGTGMRKMECL 74

Query: 175 SLTPQNI-MDDQSTLRIQGKGDKIRI--------VPL---LPSVR----KAILEYYDLCP 218
            L   ++  D +  +   GKG+K R+         PL   L +VR    K + E Y    
Sbjct: 75  RLRVTDVDFDYRQIIVRSGKGNKDRVTLLPECLCTPLREQLENVRQIHGKDLEEGYGEVG 134

Query: 219 FDLNLNIQLP----------LFRGIRGKPLNP--GVFQR---YIRQLRRYLGLPLSTT-- 261
               L+ + P          +F   R + ++P  GV +R   Y   + R     +  T  
Sbjct: 135 LPFALDRKYPNAGREWKWQYVFPSTR-RSVDPLTGVIRRRHWYDTNVSRATRQSVYNTRI 193

Query: 262 -----AHTLRHSFATHLL 274
                 HTLRHSFATHLL
Sbjct: 194 NKQVGVHTLRHSFATHLL 211


>gi|23014445|ref|ZP_00054261.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1]
          Length = 394

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 27/39 (69%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H LRHSFA+ L+S G  L  I ++LGH ++ TTQ Y ++
Sbjct: 325 HDLRHSFASLLVSGGASLPIIGAMLGHTQVQTTQRYAHL 363


>gi|302669325|ref|YP_003832475.1| phage integrase family protein [Butyrivibrio proteoclasticus B316]
 gi|302396989|gb|ADL35893.1| phage integrase family protein [Butyrivibrio proteoclasticus B316]
          Length = 354

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 140/314 (44%), Gaps = 48/314 (15%)

Query: 30  GLSKLTLQSYECDTRQFLIFL-AF---YTEEKI---TIQTIRQLSYTEIRAFIS-KRRTQ 81
           G S LT  SY  D R FL +L AF   + ++K+   +I   RQ+  ++I  FI     ++
Sbjct: 35  GKSILTRISYALDIRYFLDYLIAFAPSFLDKKVKELSIDDFRQIETSDINDFIKWMAESE 94

Query: 82  KIGDRSLKR---SLSGIKSFLKYLKKR----KITTESNI-------LNMRNLKKSNSLPR 127
            + +R+  R   S+SG+  +L  ++KR     ++  ++I       +   NL++   L  
Sbjct: 95  HLSERTRARRRSSISGLYEYLINIEKRLEHNPVSGSASIEIPENDRVTYLNLEEQEKLLS 154

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTP----QNI 181
            +     LT    +  H  ++      R+ AI++L    GLRISE  AL+++     +++
Sbjct: 155 CIKSGTGLT-GRQLKYHEKYK-----KRDLAIIFLFLDTGLRISELQALNVSDVVIYEDL 208

Query: 182 MDDQST------LRIQGKGDKIRIVPLLPSVRKA-ILEYYDLCPFD-LNLNIQLPLFRGI 233
           +DD  +      +R   K              KA I +Y D    +  + +   PLF   
Sbjct: 209 IDDNKSECYVLAVRKDRKNSLSTTKIYFSDESKAYIQDYLDSRKGNGEDTSDNSPLFTTT 268

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLS---TTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
            GK L+    Q   + L++Y+ + L+    +   LR SFA     +  ++  +Q  LGH 
Sbjct: 269 TGKRLSIREIQ---QMLKKYVAVSLNRNDISIGKLRSSFAMEFYKHEKNILILQQRLGHK 325

Query: 291 RLSTTQIYTNVNSK 304
            ++ T +Y   + +
Sbjct: 326 SITATNMYARASDR 339


>gi|282859069|ref|ZP_06268201.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282588149|gb|EFB93322.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 389

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           IR + +  G+    T H  RH+ AT + LSNG  + ++ S+LGH  + TTQIY + 
Sbjct: 329 IRAVAKRCGITKHITWHQSRHTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYASA 384


>gi|323964481|gb|EGB59957.1| phage integrase [Escherichia coli M863]
          Length = 246

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 40/173 (23%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRI----------QGKGDKIRIV 200
           D R+  +   L+  G+RI EA  LTP++   D  +  +RI          +   D++R+V
Sbjct: 59  DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLV 118

Query: 201 PL--LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL---NPGVFQRYIRQLRR--- 252
           PL  +  VR+  +E + +              R  R +PL        + +++Q  R   
Sbjct: 119 PLTDISYVRQ--MESWMIT------------TRPRRREPLWAVTDETMRNWLKQAVRRAE 164

Query: 253 ----YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               +  +P+  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 165 ADGVHFSIPV--TPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|322391942|ref|ZP_08065406.1| phage integrase family integrase/recombinase [Streptococcus peroris
           ATCC 700780]
 gi|321145168|gb|EFX40565.1| phage integrase family integrase/recombinase [Streptococcus peroris
           ATCC 700780]
          Length = 356

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 116/302 (38%), Gaps = 56/302 (18%)

Query: 54  TEEKITIQTIRQLSYTEIRAFISKRRTQK----------IGDRSLKRSLSGIKSFLKYLK 103
           T  KI +  +  ++  ++ +FI   R +           +   ++ R+LS + S  KYL 
Sbjct: 62  TMAKIPLDVLEHMTKKDMESFILYLRERPLLNANTTKNGVSQTTINRTLSALSSLYKYLT 121

Query: 104 KRKITTESNILNMRNLKKSNSL--------PRALNEKQALTLVDNVLLHTSHETKWIDA- 154
           +     +      RN+ K  +          RA N KQ L L D     T     +ID  
Sbjct: 122 EEVENEQGEPYFYRNVMKKVATKKKKETLAARAENIKQKLFLGD----ETEGFLNYIDEE 177

Query: 155 ------------------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
                             R+ AI+ LL   G+R+SEA++L  +++      + +  KG K
Sbjct: 178 YPQTLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGK 237

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-------LPLFRGIRGKPLNPGVFQRYIRQ 249
              V +  +  K  LE Y L   D     +       L L+RG+  + ++    ++ + +
Sbjct: 238 RDSVNV-AAFAKPYLEQY-LAIRDKRYKTEKTDTALFLTLYRGVPNR-IDASSVEKMVAK 294

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV---NSKNG 306
                   +  T H LRH+ AT L         +   LGH     T +YT++     KN 
Sbjct: 295 YSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNA 352

Query: 307 GD 308
            D
Sbjct: 353 LD 354


>gi|307721917|ref|YP_003893057.1| integrase family protein [Sulfurimonas autotrophica DSM 16294]
 gi|306980010|gb|ADN10045.1| integrase family protein [Sulfurimonas autotrophica DSM 16294]
          Length = 417

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)

Query: 135 LTLVDNVLLHTSHETKWIDARN--SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           LT +D+ +  T+H+  W   R     ++YL  G G+R  E ++LT  +I      + I  
Sbjct: 216 LTSIDDYIDETTHKV-WSRTRRQLKNMIYLSAGTGIRSGELVALTWADIDFVNKKIDITK 274

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL----------NP-- 240
                R+        K I++  D   F+L +N Q  LF  +    +          NP  
Sbjct: 275 TIRNGRVKGTKTYSGKRIIDMNDES-FNLLVN-QYELFEDVESDYVFLTQEKKNYKNPSM 332

Query: 241 ---GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD---LRSIQSILGHFRLST 294
              G ++ Y++    Y  +P     + LRH+FAT+L++   D   + S+ S LGH  +ST
Sbjct: 333 VSKGTWKSYLK----YCKIPYRR-FYNLRHTFATNLINKQKDSVGIVSVSSQLGHRNVST 387

Query: 295 T 295
           T
Sbjct: 388 T 388


>gi|295101359|emb|CBK98904.1| Phage integrase family [Faecalibacterium prausnitzii L2-6]
          Length = 465

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSIL 287
           LFR   G P+ P +  ++ RQ R           H LRHS AT+ LL + GD +S+Q   
Sbjct: 326 LFRLPDGLPIAPELLTKWYRQWRSAHPEFEQIVFHGLRHSSATYQLLQSDGDFKSVQGNT 385

Query: 288 GHFRLS 293
           GH   S
Sbjct: 386 GHATAS 391


>gi|257891586|ref|ZP_05671239.1| integrase [Enterococcus faecium 1,231,410]
 gi|261206697|ref|ZP_05921392.1| predicted protein [Enterococcus faecium TC 6]
 gi|289567110|ref|ZP_06447504.1| predicted protein [Enterococcus faecium D344SRF]
 gi|294615943|ref|ZP_06695773.1| integrase [Enterococcus faecium E1636]
 gi|314940596|ref|ZP_07847729.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|314943369|ref|ZP_07850141.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|314949883|ref|ZP_07853186.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
 gi|314953769|ref|ZP_07856636.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
 gi|314993029|ref|ZP_07858422.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|314998266|ref|ZP_07863135.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|257827946|gb|EEV54572.1| integrase [Enterococcus faecium 1,231,410]
 gi|260079055|gb|EEW66751.1| predicted protein [Enterococcus faecium TC 6]
 gi|289161094|gb|EFD09000.1| predicted protein [Enterococcus faecium D344SRF]
 gi|291591192|gb|EFF22871.1| integrase [Enterococcus faecium E1636]
 gi|313587746|gb|EFR66591.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|313592459|gb|EFR71304.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|313594245|gb|EFR73090.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
 gi|313597927|gb|EFR76772.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|313640228|gb|EFS04809.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|313643767|gb|EFS08347.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
          Length = 373

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 18/173 (10%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-------------KIRIV 200
           +R S I   L+  GLR  E +SLT  +   D + + + G  D               R +
Sbjct: 198 SRYSLITKFLFLTGLRYGELISLTESDY--DGNKITVSGTYDYELKIKTTTKNTGSYRTI 255

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
            L  + ++ I +  +      N N    +F    G P++   + + +R + + L +    
Sbjct: 256 ELSSNAKEIIDQLIEENKLIKN-NKDKYIFISKNGNPISIQAYNQSLRAVSKELNIDKKV 314

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMME 312
           ++H LRHS  + L   G  L++I   +GH    TT +IYT+  +KN  + ++E
Sbjct: 315 SSHMLRHSHISLLTELGIPLKAIMDRVGHEDSKTTLKIYTHT-TKNMQNQLVE 366


>gi|237742718|ref|ZP_04573199.1| predicted protein [Fusobacterium sp. 4_1_13]
 gi|229430366|gb|EEO40578.1| predicted protein [Fusobacterium sp. 4_1_13]
          Length = 205

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 9/149 (6%)

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFD 220
              LR S+   L  ++I  + +    + K +K + V L    +  ++K    Y+DL    
Sbjct: 46  NVALRYSDLSELKFEDISYENTIKLFEEKTNKKKEVKLNKFCIEEIKKIKKYYHDLKIKS 105

Query: 221 LNLN-IQLPLFRGIRGKPLNPGV----FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
            N   I   L R I  K ++  +    F RY+++ +R L +P +  +H+LR ++      
Sbjct: 106 WNKGYIFKSLSRNILSKNIDRNLTIQSFNRYLKEAQRDLKIPYNIGSHSLRKTWGKFYYE 165

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              D+ ++  IL H  + +T  Y  ++ K
Sbjct: 166 KYNDIATVMKILNHSSIESTLRYIGIDRK 194


>gi|228991307|ref|ZP_04151265.1| Integrase/recombinase [Bacillus pseudomycoides DSM 12442]
 gi|228768531|gb|EEM17136.1| Integrase/recombinase [Bacillus pseudomycoides DSM 12442]
          Length = 96

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 229 LFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           LF  I G+     G+ Q   R  R  +   +  + HT RH+ A   L NGGDL S+Q IL
Sbjct: 29  LFCNISGELFKQRGLHQMIARYGRMAMIENVRVSPHTFRHTCAKFYLKNGGDLFSLQKIL 88

Query: 288 GHFRLSTT 295
           GH  ++ T
Sbjct: 89  GHTDIAMT 96


>gi|149025512|ref|ZP_01836445.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP23-BS72]
 gi|147929384|gb|EDK80381.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP23-BS72]
          Length = 356

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 103/265 (38%), Gaps = 46/265 (17%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--------PRALNEK 132
           Q +   ++ R+LS + S  KYL +     +      RN+ K  S          RA N K
Sbjct: 99  QGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAKNIK 158

Query: 133 QALTLVDNVLLHTSHETKWID-------------------ARNSAILYLLYGCGLRISEA 173
           Q L L D     T     +ID                    R+ AI+ LL   G+R+SEA
Sbjct: 159 QKLFLGD----ETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEA 214

Query: 174 LSLTPQNI---MDDQSTLRIQGKGDKIRIV----PLLPSVRKAILEYYDLCPFDLNLNIQ 226
           ++L  +++   M      R  GK D + +     P L +      + Y     D  L   
Sbjct: 215 VNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKTDTALF-- 272

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           L L+RG+  + ++    ++ + +        +  T H LRH+ AT L         +   
Sbjct: 273 LTLYRGVPNR-IDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQ 329

Query: 287 LGHFRLSTTQIYTNVNS---KNGGD 308
           LGH     T +YT++ S   KN  D
Sbjct: 330 LGHASTQVTDLYTHIVSDEQKNALD 354


>gi|29028668|ref|NP_803356.1| integrase [Staphylococcus phage phi13]
 gi|88195912|ref|YP_500723.1| integrase [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|156604018|ref|YP_001429963.1| integrase [Staphylococcus phage tp310-3]
 gi|258444472|ref|ZP_05692805.1| integrase [Staphylococcus aureus A8115]
 gi|18920592|gb|AAL82331.1| integrase [Staphylococcus phage phi13]
 gi|87203470|gb|ABD31280.1| integrase [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|154818104|gb|ABS87530.1| integrase [Staphylococcus phage tp310-3]
 gi|257850363|gb|EEV74312.1| integrase [Staphylococcus aureus A8115]
 gi|329724941|gb|EGG61443.1| site-specific recombinase, phage integrase family [Staphylococcus
           aureus subsp. aureus 21189]
          Length = 345

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 73/148 (49%), Gaps = 5/148 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+S  L+++   G R+S A ++  ++I   ++T+ I  +  K    P   S+ K+ +++ 
Sbjct: 183 RSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDER--KTDTSPRYISIAKSDMKHI 240

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                   ++    +F+   G  +N       ++   R   +P+  T+H LRH+  ++LL
Sbjct: 241 MDVISTFAISYDGYIFKEA-GSIINLQAINNALKSACRVNNIPI-ITSHALRHTHCSYLL 298

Query: 275 SNGGDLRSIQSILGHFRLS-TTQIYTNV 301
           + G  +  I   LGH  ++ TT +Y+++
Sbjct: 299 AKGVSIHYISKRLGHKNIAITTSVYSHL 326


>gi|758229|emb|CAA57755.1| integrase [Staphylococcus phage phi13]
          Length = 345

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 73/148 (49%), Gaps = 5/148 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+S  L+++   G R+S A ++  ++I   ++T+ I  +  K    P   S+ K+ +++ 
Sbjct: 183 RSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDER--KTDTSPRYISIAKSDMKHI 240

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                   ++    +F+   G  +N       ++   R   +P+  T+H LRH+  ++LL
Sbjct: 241 MDVISTFAISYDGYIFKEA-GSIINLQAINNALKSACRVNNIPI-ITSHALRHTHCSYLL 298

Query: 275 SNGGDLRSIQSILGHFRLS-TTQIYTNV 301
           + G  +  I   LGH  ++ TT +Y+++
Sbjct: 299 AKGVSIHYISKRLGHKNIAITTSVYSHL 326


>gi|146297219|ref|YP_001180990.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410795|gb|ABP67799.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 360

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 104/258 (40%), Gaps = 31/258 (12%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            T++QL+  E++ F + + +Q +   S+++  S + + LK   K  +  E+ +  ++   
Sbjct: 96  HTLQQLNTFELQKFFN-QLSQTLSQASVRKIYSVLNNALKTAIKWNMLKENPLEFVK--- 151

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LP+   EK+        +     + K  D +    + L    GLR  E   LT  N
Sbjct: 152 ----LPQKYEEKKIKVWDIETVKKFLEDIK--DEKIHTAVTLALHAGLRAGEICGLTWDN 205

Query: 181 IMDDQSTLRI----QGKGDKIRIVPLLP--SVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +  ++  + I    Q  G +I I P     S+R   +  Y           Q PL    +
Sbjct: 206 VDFEKKCIHIKQALQKIGKEIIIKPPKSKTSIRTIYMTSYLYETLLEEYKRQEPLREAYK 265

Query: 235 -----------GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                      G P  P  F    ++L   LG P     H LRH+FAT LL    + +  
Sbjct: 266 KLGNFVCIHETGNPFCPDYFTHTFKKLVSCLGYP-EIRFHDLRHTFATILLQAQTNPKIA 324

Query: 284 QSILGHFRLSTTQIYTNV 301
             ILGH   S T+++ N+
Sbjct: 325 AEILGH---SNTKLFLNL 339


>gi|69244690|ref|ZP_00602954.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus
           faecium DO]
 gi|257879459|ref|ZP_05659112.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257881742|ref|ZP_05661395.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257890218|ref|ZP_05669871.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|260558834|ref|ZP_05831023.1| phage integrase [Enterococcus faecium C68]
 gi|293560447|ref|ZP_06676939.1| integrase [Enterococcus faecium E1162]
 gi|294621631|ref|ZP_06700796.1| integrase [Enterococcus faecium U0317]
 gi|314937844|ref|ZP_07845160.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|314941335|ref|ZP_07848228.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|314950094|ref|ZP_07853380.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
 gi|314953752|ref|ZP_07856621.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
 gi|314992804|ref|ZP_07858205.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|314997963|ref|ZP_07862859.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|68196281|gb|EAN10710.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus
           faecium DO]
 gi|257813687|gb|EEV42445.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257817400|gb|EEV44728.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257826578|gb|EEV53204.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|260075293|gb|EEW63606.1| phage integrase [Enterococcus faecium C68]
 gi|291598796|gb|EFF29848.1| integrase [Enterococcus faecium U0317]
 gi|291605595|gb|EFF35037.1| integrase [Enterococcus faecium E1162]
 gi|313588024|gb|EFR66869.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|313592608|gb|EFR71453.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|313594271|gb|EFR73116.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
 gi|313599758|gb|EFR78601.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|313642702|gb|EFS07282.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|313643535|gb|EFS08115.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
          Length = 379

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 30/163 (18%)

Query: 157 SAILYLLYGC-GLRISEALSLTPQNI-MDDQ---------------STLRIQGKGDKIRI 199
           S +L L+ G  G+R +E L LT ++I  +DQ                  + +    KI I
Sbjct: 192 SPMLVLVAGATGMRFAELLGLTWEDIDFEDQIITINKTWNYKLNEWGKTKNETSNRKISI 251

Query: 200 ----VPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRR 252
               + LL   +    E ++      N  I+ P   +F  ++   ++     +Y+R+  +
Sbjct: 252 DKHTIDLLKKFKINQKELFE------NFEIKNPHNFVFFNLKNGLVSSNAVSKYLRKKLK 305

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            LG+    T H LRH+ A+ LL  G ++ S+   LGH  L TT
Sbjct: 306 ELGIEKQFTLHGLRHTHASILLYQGVNILSVSKRLGHSSLETT 348


>gi|304383251|ref|ZP_07365721.1| integrase [Prevotella marshii DSM 16973]
 gi|304335619|gb|EFM01879.1| integrase [Prevotella marshii DSM 16973]
          Length = 306

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 63/154 (40%), Gaps = 7/154 (4%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTP-QNIMDDQSTLRIQGKGDKIR-IVPLLPSVRKAIL 211
           AR   I     G  +   E L L   Q   D Q  +R + +  K+  IVPL P     I 
Sbjct: 130 ARRMFIFSCFTGLAIADMEHLQLGHIQTAADGQKYIRKERQKTKVEFIVPLHPIAEAIIN 189

Query: 212 EYYDLCPFDLNLNIQLPLFRG---IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           +  +  P      +Q    +G   I     +  V    +  + +  G+    + H  RH+
Sbjct: 190 QCKEEQP--CMKEMQTVKEKGDDFIFHCTCSRSVMSAKLSIVGKACGIRERLSYHMARHT 247

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           F T  LS G  + SI  ++GH  +S+TQIY  V 
Sbjct: 248 FGTLSLSAGIPIESIAKMMGHASISSTQIYAQVT 281


>gi|326790923|ref|YP_004308744.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326541687|gb|ADZ83546.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 365

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 82/192 (42%), Gaps = 30/192 (15%)

Query: 133 QALTLVDNV----LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQ 185
           Q  T+ DNV     L+   +TKW          L +  G+R  E   L   +   I  D 
Sbjct: 164 QEFTVWDNVQINKFLNIVKDTKWY-----VPFLLAFTTGMRQGEICGLKWSDYNTITGDI 218

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAIL--------EYYDLCPFD-LNLNIQLPLFRGI--- 233
           S  R   +  K++      S RK +L        +Y   C  +  NL  +  +  G    
Sbjct: 219 SVSRSMQRNFKLKDTKTKSSRRKIVLLKKTKLALDYQKRCQEENENLLGKQYINSGFICT 278

Query: 234 --RGKPLNPGVFQRYIRQL-RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
              G+ +NP    +  ++L + Y   P+    H +RHSFAT LL NG + + +  ILGH 
Sbjct: 279 HNNGESINPENLGKTFKKLIKEYKLEPIR--FHDIRHSFATILLQNGTNPKIVSEILGHS 336

Query: 291 RLSTT-QIYTNV 301
            + TT  +Y++V
Sbjct: 337 DVQTTLNVYSHV 348


>gi|258539026|ref|YP_003173525.1| phage-related integrase [Lactobacillus rhamnosus Lc 705]
 gi|257150702|emb|CAR89674.1| Phage-related integrase [Lactobacillus rhamnosus Lc 705]
          Length = 375

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 36/68 (52%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LFR IR   L+     + +R +++ L +  + T H LRH+  ++L++N  D+  I   LG
Sbjct: 283 LFRSIRHNMLSSTAINKDLRTIQKTLDISPAITFHGLRHTHVSYLIANHVDINYISKRLG 342

Query: 289 HFRLSTTQ 296
           H     TQ
Sbjct: 343 HANTMITQ 350


>gi|256818734|ref|YP_003135801.1| integrase family protein [Cyanothece sp. PCC 8802]
 gi|256592474|gb|ACV03344.1| integrase family protein [Cyanothece sp. PCC 8802]
          Length = 373

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 30/53 (56%)

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R+   P   +AH+LRH+  T  L  G  LR +Q +LGH    TT +Y +++ +
Sbjct: 306 RHQSSPRKLSAHSLRHTAGTLALRAGASLRQVQDLLGHSDPRTTVLYAHISDR 358


>gi|168186645|ref|ZP_02621280.1| phage integrase [Clostridium botulinum C str. Eklund]
 gi|169295376|gb|EDS77509.1| phage integrase [Clostridium botulinum C str. Eklund]
          Length = 393

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 4/62 (6%)

Query: 245 RYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN 302
           +Y+ ++  Y LG+  +   H LRH+ AT LL  G +++ IQ  LGH +L+TT   Y++V 
Sbjct: 313 KYLSRVVNYDLGIKFN--FHALRHTHATMLLEGGANIKDIQKRLGHSKLATTMDTYSHVT 370

Query: 303 SK 304
            K
Sbjct: 371 EK 372


>gi|94442224|dbj|BAE93611.1| integron integrase [uncultured bacterium]
          Length = 211

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 81/197 (41%), Gaps = 50/197 (25%)

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           N+   K+   LP  L++ +  TL+DN           +   N  I  L+YG G+R  E L
Sbjct: 26  NVVRAKRPKRLPVVLSQAEVCTLLDN-----------MSGINGLIARLIYGTGMRKMECL 74

Query: 175 SLTPQNI-MDDQSTLRIQGKGDKIRI--------VPL---LPSVR----KAILEYYDLCP 218
            L   ++  D +  +   GKG+K R+         PL   L +VR    K + E Y    
Sbjct: 75  RLRVTDVDFDYRQIIVRSGKGNKDRVTLLPECLCTPLREQLENVRQIHGKDLEEGYGEVG 134

Query: 219 FDLNLNIQLP----------LFRGIRGKPLNP--GVFQRY----------IRQLRRYLGL 256
               L+ + P          +F   R + ++P  GV +R+          IRQ      +
Sbjct: 135 LPFALDRKYPNAGREWKWQYVFPSTR-RSVDPLTGVIRRHHWYDTNASRAIRQSVYNTRI 193

Query: 257 PLSTTAHTLRHSFATHL 273
                 HTLRH+FATHL
Sbjct: 194 NKQVGVHTLRHTFATHL 210


>gi|10955287|ref|NP_052628.1| recombinase [Escherichia coli O157:H7 str. Sakai]
 gi|168750741|ref|ZP_02775763.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4113]
 gi|168757307|ref|ZP_02782314.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4401]
 gi|168762993|ref|ZP_02788000.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4501]
 gi|168769229|ref|ZP_02794236.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4486]
 gi|168769339|ref|ZP_02794346.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4486]
 gi|168776712|ref|ZP_02801719.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4196]
 gi|168783046|ref|ZP_02808053.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4076]
 gi|168789927|ref|ZP_02814934.1| site-specific recombinase [Escherichia coli O157:H7 str. EC869]
 gi|168802576|ref|ZP_02827583.1| site-specific recombinase [Escherichia coli O157:H7 str. EC508]
 gi|195940320|ref|ZP_03085702.1| recombinase [Escherichia coli O157:H7 str. EC4024]
 gi|208811333|ref|ZP_03253093.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4206]
 gi|208817412|ref|ZP_03258441.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4045]
 gi|208823358|ref|ZP_03263675.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4042]
 gi|209395547|ref|YP_002268408.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4115]
 gi|217329850|ref|ZP_03445925.1| site-specific recombinase [Escherichia coli O157:H7 str. TW14588]
 gi|254667472|ref|YP_003082158.1| replication protein [Escherichia coli O157:H7 str. TW14359]
 gi|261225655|ref|ZP_05939936.1| replication protein [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257890|ref|ZP_05950423.1| replication protein [Escherichia coli O157:H7 str. FRIK966]
 gi|3337019|dbj|BAA31778.1| recombinase [Escherichia coli O157:H7 str. Sakai]
 gi|187767963|gb|EDU31807.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4196]
 gi|188015136|gb|EDU53258.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4113]
 gi|188999555|gb|EDU68541.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4076]
 gi|189355673|gb|EDU74092.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4401]
 gi|189361676|gb|EDU80095.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4486]
 gi|189361693|gb|EDU80112.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4486]
 gi|189366703|gb|EDU85119.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4501]
 gi|189370568|gb|EDU88984.1| site-specific recombinase [Escherichia coli O157:H7 str. EC869]
 gi|189375452|gb|EDU93868.1| site-specific recombinase [Escherichia coli O157:H7 str. EC508]
 gi|208729963|gb|EDZ79180.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4206]
 gi|208730589|gb|EDZ79288.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4045]
 gi|208736953|gb|EDZ84638.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4042]
 gi|209157002|gb|ACI34436.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4115]
 gi|217317081|gb|EEC25514.1| site-specific recombinase [Escherichia coli O157:H7 str. TW14588]
 gi|254595824|gb|ACT75184.1| replication protein [Escherichia coli O157:H7 str. TW14359]
 gi|320187885|gb|EFW62554.1| RepFIB associated resolvase [Escherichia coli O157:H7 str. EC1212]
 gi|326337138|gb|EGD60974.1| RepFIB associated resolvase [Escherichia coli O157:H7 str. 1125]
 gi|326347637|gb|EGD71355.1| RepFIB associated resolvase [Escherichia coli O157:H7 str. 1044]
          Length = 246

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 40/173 (23%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQS------------TLRIQGKGDKIRIV 200
           D R+  +   L+  G+RI EA  LTP++   D +              R +   D++R+V
Sbjct: 59  DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGARPFVRILSEKVRARRGRPPKDEVRLV 118

Query: 201 PL--LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL---NPGVFQRYIRQLRR--- 252
           PL  +  VR+  +E + +              R  R +PL        + +++Q  R   
Sbjct: 119 PLTDISYVRQ--MESWMIT------------TRPRRREPLWAVTDETMRNWLKQAVRRAE 164

Query: 253 ----YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               +  +P+  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 165 ADGVHFSIPV--TPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|332085585|gb|EGI90750.1| resolvase [Shigella boydii 3594-74]
          Length = 213

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 40/173 (23%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRI----------QGKGDKIRIV 200
           D R+  +   L+  G+RI EA  LTP++   D  +  +RI          +   D++R+V
Sbjct: 26  DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLV 85

Query: 201 PL--LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL---NPGVFQRYIRQLRR--- 252
           PL  +  VR+  +E + +              R  R +PL        + +++Q  R   
Sbjct: 86  PLTDISYVRQ--MESWMIT------------TRPRRREPLWAVTDETMRNWLKQAVRRAE 131

Query: 253 ----YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               +  +P+  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 132 ADGVHFSIPV--TPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 182


>gi|319935664|ref|ZP_08010095.1| hypothetical protein HMPREF9488_00926 [Coprobacillus sp. 29_1]
 gi|319809322|gb|EFW05757.1| hypothetical protein HMPREF9488_00926 [Coprobacillus sp. 29_1]
          Length = 356

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 84/200 (42%), Gaps = 24/200 (12%)

Query: 117 RNLKKSNSLPRA--------LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
           RNL K N L +         +++KQ +  +D   +  + ++   D  +  +  +LY  GL
Sbjct: 86  RNLVKENVLVKIKKVKDQYRIDKKQVIWDLD---VFRTFDSYIADDMDKLLFNMLYFLGL 142

Query: 169 RISEALSLTPQNIMDDQ-------STLRIQGKGDKIRIVPLLPSVRKAILE---YYDLCP 218
           R  E LSL   NI  ++       + ++I GKG  +       S+R   +    +  L  
Sbjct: 143 RKGELLSLKWSNINFEKKIVNVISTAVQIVGKGQIVTTPKTNHSIRGICMNDTLFEMLSN 202

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGV-FQRYIRQLRRYLGLP--LSTTAHTLRHSFATHLLS 275
           +   + +Q  +   +     N  + F    R+L +YL L        H  RHS AT L S
Sbjct: 203 YYFKMKLQYDVVNHLYIFGSNKMISFSALDRKLAKYLKLSGVEKINLHGFRHSHATMLAS 262

Query: 276 NGGDLRSIQSILGHFRLSTT 295
              D++SI   LGH  +  T
Sbjct: 263 LTTDIKSISDRLGHESVDVT 282


>gi|297154638|gb|ADI04350.1| integrase family protein [Streptomyces bingchenggensis BCW-1]
          Length = 177

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 26/41 (63%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T H LRH  A+ L  NG DL +IQ +LGH  ++TT  Y +V
Sbjct: 112 TPHVLRHFCASQLYGNGLDLLAIQEVLGHSWIATTMRYIHV 152


>gi|257451847|ref|ZP_05617146.1| hypothetical protein F3_02191 [Fusobacterium sp. 3_1_5R]
 gi|317058401|ref|ZP_07922886.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
 gi|313684077|gb|EFS20912.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
          Length = 397

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 31/171 (18%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------------------GKGDKIRIV 200
           +L+L YGC  R  E L +T  +I   ++T++I+                        RI+
Sbjct: 210 LLFLFYGC--RTGETLGITFSSINFIENTIKIKRSLVWNRENGEYYVNEFLKTNSSRRIL 267

Query: 201 PLLPSVRKAILEYYDLCP-----FDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRY 253
           PL   ++   LE  +        F    +     +  +R  GK +     + ++    + 
Sbjct: 268 PLFEEMKGLFLERKERIEKNKKFFKKAYDNTWNDYICVRDDGKMIKYYALRNFLESFCKK 327

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL---STTQIYTNV 301
              P   T H+LRH+FAT +   G DL+ +Q  LGH  +   + T +++N+
Sbjct: 328 YNFP-RLTPHSLRHTFATIMHDEGMDLKDLQMWLGHASIKMTADTYVHSNI 377


>gi|159027625|emb|CAO86997.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 189

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 22/161 (13%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRI------------QGKGDKIRIVPLLPSVRKAILEYY 214
             RI+EAL L  +++  D  T R+            +GK D+   VP+   ++  + +Y 
Sbjct: 37  AARINEALELRVKDVYKD-PTRRVPNDEIAFRRETRKGK-DRNHTVPICGELKLKLRDY- 93

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHL 273
                + + N+   LF GI G+ L+      Y++     +GL       H  R S  T L
Sbjct: 94  -----NPSSNLDDYLFPGINGR-LSYEAALTYLKTSAAKVGLDDKKIVTHCGRRSCITEL 147

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
             NG DLR+IQ++ GH  ++  Q Y  ++     + +  I+
Sbjct: 148 ARNGTDLRTIQAVSGHASIANLQRYIEIDPDRTKNALETIF 188


>gi|134046210|ref|YP_001097695.1| phage integrase family protein [Methanococcus maripaludis C5]
 gi|132663835|gb|ABO35481.1| phage integrase family protein [Methanococcus maripaludis C5]
          Length = 182

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 18/167 (10%)

Query: 152 IDARNSAILY-LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKA 209
           +D+    + + +LYG  LR+SE L++  +NI  ++   ++   K +  +I  +   + + 
Sbjct: 22  VDSTEHKLFFKMLYGMALRVSELLTIEVKNINLNEGVCKLLDTKTETFQICVIPEWLNED 81

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           I  +      D NL     LF+  + +     + ++Y +  +    +    + HT R S 
Sbjct: 82  IFGH----IVDNNLKDDDRLFK-FKNRTYAWELVKKYTKNAK----IHKEFSTHTFRRSR 132

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-------GGDW 309
           A HLL++G  L  +   L H  ++TT  Y  +   +        GDW
Sbjct: 133 ALHLLNDGVPLEKVSKYLRHKSINTTMHYLKITVDDIKKELVKIGDW 179


>gi|307706604|ref|ZP_07643411.1| tyrosine recombinase xerD [Streptococcus mitis SK321]
 gi|307618059|gb|EFN97219.1| tyrosine recombinase xerD [Streptococcus mitis SK321]
          Length = 356

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 99/255 (38%), Gaps = 43/255 (16%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--------PRALNEK 132
           Q +   ++ R+LS + S  KYL +     +      RN+ K  S          RA N K
Sbjct: 99  QGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIK 158

Query: 133 QALTLVDNVLLHTSHETKWID-------------------ARNSAILYLLYGCGLRISEA 173
           Q L L D     T     +ID                    R+ AI+ LL   G+R+SEA
Sbjct: 159 QKLFLDD----ETEGFLTYIDQEYPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEA 214

Query: 174 LSLTPQNI---MDDQSTLRIQGKGDKIRIV----PLLPSVRKAILEYYDLCPFDLNLNIQ 226
           ++L  +++   M      R  GK D + +     P L +      + Y     D  L   
Sbjct: 215 VNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKTDTALF-- 272

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           L L+RG+  + ++    ++ + +        +  T H LRH+ AT L         +   
Sbjct: 273 LTLYRGVPNR-IDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQ 329

Query: 287 LGHFRLSTTQIYTNV 301
           LGH     T +YT++
Sbjct: 330 LGHASTQVTDLYTHI 344


>gi|218905481|ref|YP_002453315.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus cereus AH820]
 gi|218537626|gb|ACK90024.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus cereus AH820]
          Length = 319

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 126/299 (42%), Gaps = 33/299 (11%)

Query: 16  KERQNWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +E +N +++  IE+   G +  TLQ Y  D R  L  +  + E K  I+  R+    +IR
Sbjct: 16  QENKNLVKDFLIEKKAQGKAASTLQQYNWDLRIILFLIHEHFENKNLIELTRK----DIR 71

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRA--- 128
                 +  ++ +  +   +S ++S L++         E N+ +     +   LP+    
Sbjct: 72  NLSIIFQEMRMSNARVNGLMSALRSALEFCADDDDYNYEFNVGS-----RVRGLPQNPIR 126

Query: 129 ----LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
               + + Q   L+D +L     + K++ A     L L Y    R +E   +  + + + 
Sbjct: 127 EITFITDDQINWLIDELL----EQEKYMLA---TYLALSYYSAARKNEVYQVQKEELTER 179

Query: 185 QSTLRIQGK-GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
             T  ++GK G K R+    P V+K I  Y +    D   ++ + +++    K LN  VF
Sbjct: 180 YYTNIVRGKRGKKFRLY-YNPRVQKCIRLYINQRGKDTIPDLFVRVYKNGERKLLNKSVF 238

Query: 244 QRYIRQLRRYL----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             + +   + L    G       H  RHS   +L   G  L  ++S+  H  +STTQ Y
Sbjct: 239 NYWCKIFAKMLYEKEGKEYKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSY 297


>gi|148985767|ref|ZP_01818895.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP3-BS71]
 gi|147922071|gb|EDK73194.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP3-BS71]
 gi|301800098|emb|CBW32699.1| tyrosine recombinase XerC [Streptococcus pneumoniae OXC141]
          Length = 356

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 103/265 (38%), Gaps = 46/265 (17%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--------PRALNEK 132
           Q +   ++ R+LS + S  KYL +     +      RN+ K  S          RA N K
Sbjct: 99  QGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIK 158

Query: 133 QALTLVDNVLLHTSHETKWID-------------------ARNSAILYLLYGCGLRISEA 173
           Q L L D     T     +ID                    R+ AI+ LL   G+R+SEA
Sbjct: 159 QKLFLGD----ETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGIRLSEA 214

Query: 174 LSLTPQNI---MDDQSTLRIQGKGDKIRIV----PLLPSVRKAILEYYDLCPFDLNLNIQ 226
           ++L  +++   M      R  GK D + +     P L +      + Y     D  L   
Sbjct: 215 VNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKTDTALF-- 272

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           L L+RG+  + ++    ++ + +        +  T H LRH+ AT L         +   
Sbjct: 273 LTLYRGVPNR-IDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQ 329

Query: 287 LGHFRLSTTQIYTNVNS---KNGGD 308
           LGH     T +YT++ S   KN  D
Sbjct: 330 LGHSSTQVTDLYTHIVSDEQKNALD 354


>gi|222080176|ref|YP_002540039.1| site-specific tyrosine recombinase XerC [Agrobacterium vitis S4]
 gi|221738821|gb|ACM39600.1| site-specific tyrosine recombinase XerC [Agrobacterium vitis S4]
          Length = 312

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 66/159 (41%), Gaps = 14/159 (8%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           LL   GLRISEAL+L   + + D      Q K +K R+VP+  SV +A+  Y ++     
Sbjct: 142 LLASTGLRISEALNLRLDDALPDGVLHIRQTKFNKSRLVPMHASVVEALRAYLEVRRRFA 201

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT----AHTLRHSFATHLLSNG 277
             +    +F  +  KP+     +     + R  G+    +     H LRH+FAT  L   
Sbjct: 202 GADDH--VFLSVDAKPMPLRTVESTFHVILRKAGVGQDRSRRPRIHDLRHTFATRALEQC 259

Query: 278 G--------DLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                    D  ++ + LGH  +  T  Y        GD
Sbjct: 260 AMRRDDVARDFVALSTYLGHASIRHTYWYLEATPDLMGD 298


>gi|9507745|ref|NP_061411.1| site-specific recombinase [Plasmid F]
 gi|209921886|ref|YP_002295965.1| integrase [Escherichia coli SE11]
 gi|291289394|ref|YP_003517726.1| resolvase [Klebsiella pneumoniae]
 gi|298155852|ref|YP_003717678.1| putative resolvase (protein D) [Escherichia coli ETEC 1392/75]
 gi|331685923|ref|ZP_08386500.1| putative site-specific recombinase [Escherichia coli H299]
 gi|9910720|sp|P56979|INTM_ECOLI RecName: Full=Probable site-specific recombinase
 gi|8918855|dbj|BAA97902.1| int [Plasmid F]
 gi|209915379|dbj|BAG80450.1| integrase [Escherichia coli SE11]
 gi|290792355|gb|ADD63680.1| resolvase [Klebsiella pneumoniae]
 gi|297374449|emb|CBL93511.1| putative resolvase (protein D) [Escherichia coli ETEC 1392/75]
 gi|331076876|gb|EGI48097.1| putative site-specific recombinase [Escherichia coli H299]
          Length = 246

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 40/173 (23%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRI----------QGKGDKIRIV 200
           D R+  +   L+  G+RI EA  LTP++   D  +  +RI          +   D++R+V
Sbjct: 59  DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLV 118

Query: 201 PL--LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL---NPGVFQRYIRQLRR--- 252
           PL  +  VR+  +E + +              R  R +PL        + +++Q  R   
Sbjct: 119 PLTDISYVRQ--MESWMIT------------TRPRRREPLWAVTDETMRNWLKQAVRRAE 164

Query: 253 ----YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               +  +P+  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 165 ADGVHFSIPV--TPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|300813798|ref|ZP_07094105.1| site-specific recombinase, phage integrase family [Peptoniphilus
           sp. oral taxon 836 str. F0141]
 gi|300512088|gb|EFK39281.1| site-specific recombinase, phage integrase family [Peptoniphilus
           sp. oral taxon 836 str. F0141]
          Length = 411

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 85/219 (38%), Gaps = 53/219 (24%)

Query: 131 EKQALTLVDNVLL-----HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           +K+A+T+ + VL      ++    KW       I  ++   G+R+ E   L   +I  D 
Sbjct: 178 KKKAMTIEEQVLFEEYLSNSDEYKKWY-----PIFIVMLWTGMRVGEVTGLQWDDIDFDN 232

Query: 186 STLRI--------QGKG-------------DKIRIVPLLPSVRKAILEYYDLCP-FDLNL 223
             + +        +GKG                R +P++  V+ A L   +L   F +  
Sbjct: 233 GLISVNRTLVYYSKGKGLNNRYAINTPKTESGKRSIPMVQKVKDAFLMERELQKTFGIEC 292

Query: 224 NIQLPLFRGIR-----GKPLNPGVFQRYIRQLRRYLGLPLST---------------TAH 263
              +  F+        GK  N G   + +R++ R   L +                 + H
Sbjct: 293 CDSIDGFKDFVFLNRFGKVHNNGTLNKALRRIVRDCNLSIMDKNKSNSNDILLVPHLSNH 352

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
             RH+F T L     + +++QSILGH  +STT  IY + 
Sbjct: 353 IFRHTFTTRLNEQNINTKAMQSILGHSDISTTMDIYVDA 391


>gi|300726814|ref|ZP_07060244.1| integrase [Prevotella bryantii B14]
 gi|299775927|gb|EFI72507.1| integrase [Prevotella bryantii B14]
          Length = 404

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +Q  ++ LR   G+    T HT RH+FAT + L  G  + ++  +LGH  +S T+ Y  V
Sbjct: 322 YQTCLKSLRLRAGISFPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKV 381

Query: 302 N 302
            
Sbjct: 382 T 382


>gi|257077129|ref|ZP_05571490.1| site-specific integrase/recombinase [Ferroplasma acidarmanus fer1]
          Length = 144

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 30/42 (71%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           H  RH++A +++ N  DL S++ +LGH  L+TT IY+ +N++
Sbjct: 58  HKCRHTYAHNMIKNDIDLESLRQMLGHEDLATTGIYSRMNTE 99


>gi|91777115|ref|YP_552323.1| putative phage integrase [Burkholderia xenovorans LB400]
 gi|91689775|gb|ABE32973.1| putative phage integrase [Burkholderia xenovorans LB400]
          Length = 360

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 138/308 (44%), Gaps = 37/308 (12%)

Query: 16  KERQNWLQNLEI--ERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           ++R++W ++ +I  +  L++   +  S E    Q+ +FL +    + ++ T+   +  E 
Sbjct: 22  QQREDWRRDPQIAFDAWLARQHFRRSSAEVYQAQWGLFLDWLGMRQKSLATVDARAIAEF 81

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-----------ESNILNMRNLK 120
            A +  R+TQ++      R L  I+  L ++++ +  +           E+   N R+ +
Sbjct: 82  VAGLDVRKTQRM------RYLRLIERVLDHVREIESASTNPARFIAQDGEAAWRNARDNE 135

Query: 121 KSNSLPRALNEKQALTL-VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
            +  L  A  E+ ALT  + + LL+ S   +W + R+ A++ +  G GL+  EA +LT  
Sbjct: 136 PTGFLSHA--ERTALTAHLFSPLLNLSAARRWRERRDRALIAVFLGGGLKTGEAAALTVS 193

Query: 180 NIMDDQSTLRIQGKGD----KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
            +      + I+        + R+ P   ++  A L    L   +L  N+  P      G
Sbjct: 194 CVTAGSPWVTIEAANPMLTRRTRLAPFAAAILDAWLAERRLA--ELAGNLVFPA--SPSG 249

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTA----HTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           +P++     R +  L    G+  S T+     TLR++FA  L  +G +   +   LG  +
Sbjct: 250 RPMHKATMLRAVDALIDGAGIAASRTSRASPQTLRNTFAADLFESGVEAELVGQWLGFVQ 309

Query: 292 -LSTTQIY 298
            +S  ++Y
Sbjct: 310 AVSANRLY 317


>gi|29347879|ref|NP_811382.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253572466|ref|ZP_04849868.1| integrase [Bacteroides sp. 1_1_6]
 gi|29339781|gb|AAO77576.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251837881|gb|EES65970.1| integrase [Bacteroides sp. 1_1_6]
          Length = 86

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 27/38 (71%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           T +T RHSF T +LS+G  + SI  ++GH  +++TQ+Y
Sbjct: 48  TPYTARHSFGTLMLSSGIPIESIAKMMGHTNINSTQVY 85


>gi|315038271|ref|YP_004031839.1| phage integrase [Lactobacillus amylovorus GRL 1112]
 gi|312276404|gb|ADQ59044.1| Phage integrase [Lactobacillus amylovorus GRL 1112]
          Length = 310

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 11/147 (7%)

Query: 159 ILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILE 212
             YL+   GLR +EAL+LTP++   + QS +  +    K +     P     S R  +++
Sbjct: 140 FFYLIAKTGLRFAEALALTPEDFDFEKQSIIINKSWNYKEKHGHFQPTKNESSNRTVMVD 199

Query: 213 YYDLCPFDLNLN---IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
              +  F + +N   +  P+F     +  N  + Q+ +  L +   +P+  + H LRH+ 
Sbjct: 200 LQLMQQFQVMINNKELNQPIFFSKEQRIYNSTLNQK-LASLCKNNDIPV-ISIHGLRHTH 257

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           A+ LL  G  + S+   LGH    TTQ
Sbjct: 258 ASLLLYEGVSIASVAKRLGHNNTMTTQ 284


>gi|307564902|ref|ZP_07627425.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
 gi|307346388|gb|EFN91702.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
          Length = 135

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           H  RH+F T  LS G  + SI  ++GH  +++TQIY  V 
Sbjct: 65  HMGRHTFGTMCLSAGVPIESIAKMMGHASIASTQIYAQVT 104


>gi|304373148|ref|YP_003856357.1| Probable integrase/recombinase ripx [Mycoplasma hyorhinis HUB-1]
 gi|304309339|gb|ADM21819.1| Probable integrase/recombinase ripx [Mycoplasma hyorhinis HUB-1]
 gi|330723229|gb|AEC45599.1| Probable integrase/recombinase ripx [Mycoplasma hyorhinis MCLD]
          Length = 307

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 66/150 (44%), Gaps = 19/150 (12%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY 213
           ++ L+   GLR SEA+++TP +    +  L I    +       LP     S+RK  L++
Sbjct: 138 LILLIAKTGLRYSEAIAVTPADFDFTKQILNISKTWNYKEDGGFLPTKNKSSIRKIPLDW 197

Query: 214 YDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR----YLGLPLSTTAHTLR 266
                F     NL    P+F        N  +F   I ++       + +P   + H LR
Sbjct: 198 QTCSQFSTLVANLPQNQPIFL------FNHKIFNSTINEILHKKCSSVNIP-QISLHGLR 250

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           H+ A+ LL  G  + S+   LGH  ++TT+
Sbjct: 251 HTHASILLYAGVSIASVAKRLGHASMNTTE 280


>gi|167768465|ref|ZP_02440518.1| hypothetical protein CLOSS21_03024 [Clostridium sp. SS2/1]
 gi|283795670|ref|ZP_06344823.1| putative phage integrase [Clostridium sp. M62/1]
 gi|167709989|gb|EDS20568.1| hypothetical protein CLOSS21_03024 [Clostridium sp. SS2/1]
 gi|291077342|gb|EFE14706.1| putative phage integrase [Clostridium sp. M62/1]
 gi|291537565|emb|CBL10677.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
 gi|291560440|emb|CBL39240.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2]
          Length = 431

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 25/33 (75%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           H LRH++A++LL+NG   + +Q +LGH  +STT
Sbjct: 373 HQLRHTYASNLLANGAAPKDVQELLGHSDVSTT 405


>gi|329117091|ref|ZP_08245808.1| site-specific tyrosine recombinase XerS [Streptococcus parauberis
           NCFD 2020]
 gi|326907496|gb|EGE54410.1| site-specific tyrosine recombinase XerS [Streptococcus parauberis
           NCFD 2020]
          Length = 356

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 112/282 (39%), Gaps = 41/282 (14%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQK----------IGDRSLKRSLSGIKSFLKYLKKRKI 107
           I + T+  L+  ++ AF+   R +           +   ++ R+LS + S  KYL +   
Sbjct: 66  IDLSTLEHLTKKDMEAFVLYLRERPSLNTYSTKSGVSQTTINRTLSALSSLYKYLTEEVE 125

Query: 108 TTESNILNMRNLKKSNSL--------PRALNEKQALTLVDNV---LLHTSHETKWI---- 152
             +      RN+ K  S          RA N KQ L L D     L +  +E + +    
Sbjct: 126 NDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQKLFLGDETMEFLEYVDNEYENLLSNR 185

Query: 153 --------DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
                     R+ AI+ LL   G+R+SEA++L  +++      + +  KG K   V +  
Sbjct: 186 AKSSFRKNKERDLAIIALLLASGVRLSEAVNLDVKDLNLKMMVIEVTRKGGKRDSVNVAG 245

Query: 205 SVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
             +  I  Y  +          +L   L  +RG+  + ++    ++ + +  +     + 
Sbjct: 246 FAKPYIENYLAIRKNRYKAEKQDLAFFLTEYRGVPNR-IDASSIEKMVAKYSQ--DFKIR 302

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T H LRH+ AT L         +   LGH     T +YT++
Sbjct: 303 VTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHI 344


>gi|307291405|ref|ZP_07571289.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|306497636|gb|EFM67169.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
          Length = 408

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 33/173 (19%)

Query: 162 LLYGCGLRISEALSLTPQNI--------MDDQSTLRIQGKGDKI----------RIVPLL 203
           +++  GLR  E ++L   N          D Q   R +  G  I          R + + 
Sbjct: 218 IIFDLGLRKGEVMALRWFNFDFRDNILTFDKQRLYRKERPGQVILDDVKTDAGKRSLKMT 277

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLP--------LFRGIRGKPLNPGVFQRYI----RQLR 251
             VR ++LE Y +  +DL  N+ LP        LF   RGK +   + QR +     ++ 
Sbjct: 278 NRVRNSVLELYGIN-YDLTNNV-LPMTKSNKDFLFINNRGKNVGLPIRQRSVDTAWHRII 335

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
               LP     H  RH+ A  L   G  L  I+ +LGH  + TT+IY +V+++
Sbjct: 336 NKAQLP-KIRIHDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVSAE 387


>gi|303246068|ref|ZP_07332349.1| integrase family protein [Desulfovibrio fructosovorans JJ]
 gi|302492464|gb|EFL52335.1| integrase family protein [Desulfovibrio fructosovorans JJ]
          Length = 373

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 11/120 (9%)

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKI-RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
           SE LSL  +NI     T+RI     K  R VP+ PS  K + E           + Q   
Sbjct: 234 SELLSLRWENIDFTAGTVRIYATKTKTYRTVPINPSFLKRLEEE--------KASSQSEY 285

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
                G+ L     ++  +   +  G+   T  + LRH FAT LLS G DL ++  ++GH
Sbjct: 286 VIEYMGRKLT--TIRKAFKHACQRAGITYPTRMYDLRHLFATTLLSRGADLAAVSKMMGH 343


>gi|283771168|ref|ZP_06344059.1| phage integrase [Staphylococcus aureus subsp. aureus H19]
 gi|283459762|gb|EFC06853.1| phage integrase [Staphylococcus aureus subsp. aureus H19]
          Length = 349

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 73/148 (49%), Gaps = 5/148 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+S  L+++   G R+S A ++  ++I   ++T+ I  +  K    P   S+ K+ +++ 
Sbjct: 191 RSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDER--KTNTSPRYISIAKSDMKHI 248

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                   ++    +F+   G  +N       ++   R   +P+  T+H LRH+  ++LL
Sbjct: 249 MDVISTFAISYDGYIFKEA-GSIINLHAINNTLKSACRVNNIPI-ITSHALRHTHCSYLL 306

Query: 275 SNGGDLRSIQSILGHFRLS-TTQIYTNV 301
           + G  +  I   LGH  ++ TT +Y+++
Sbjct: 307 AKGVSIHYISKRLGHKNIAITTSVYSHL 334


>gi|253682480|ref|ZP_04863277.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum D str. 1873]
 gi|253562192|gb|EES91644.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum D str. 1873]
          Length = 184

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 4/62 (6%)

Query: 245 RYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN 302
           +Y+ ++  Y LG+  +   H LRH+ AT LL  G +++ IQ  LGH +L+TT   Y++V 
Sbjct: 104 KYLSRVVNYDLGIKFN--FHALRHTHATMLLEGGANIKDIQKRLGHSKLATTMDTYSHVT 161

Query: 303 SK 304
            K
Sbjct: 162 EK 163


>gi|253315027|ref|ZP_04838240.1| integrase [Staphylococcus aureus subsp. aureus str. CF-Marseille]
          Length = 341

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 73/148 (49%), Gaps = 5/148 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+S  L+++   G R+S A ++  ++I   ++T+ I  +  K    P   S+ K+ +++ 
Sbjct: 183 RSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDER--KTDTSPRYISIAKSDMKHI 240

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                   ++    +F+   G  +N       ++   R   +P+  T+H LRH+  ++LL
Sbjct: 241 MDVISTFAISYDGYIFKEA-GSIINLQAINNALKSACRVNNIPI-ITSHALRHTHCSYLL 298

Query: 275 SNGGDLRSIQSILGHFRLS-TTQIYTNV 301
           + G  +  I   LGH  ++ TT +Y+++
Sbjct: 299 AKGVSIHYISKRLGHKNIAITTSVYSHL 326


>gi|261367877|ref|ZP_05980760.1| putative transposase [Subdoligranulum variabile DSM 15176]
 gi|282570685|gb|EFB76220.1| putative transposase [Subdoligranulum variabile DSM 15176]
          Length = 411

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 87/222 (39%), Gaps = 51/222 (22%)

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           +N  + + +  AL   Q    +++V  H  +   W       +  +L G G RI EAL L
Sbjct: 172 KNSDQHSGIRHALTVAQQRAFMEHVANHPVYFHWW------PLFTILLGTGCRIGEALGL 225

Query: 177 TPQNIMDDQSTLRI----------------------QGKGDKIRIVPLLPSVRKAIL--- 211
             ++I  +   + I                      + K  + R +P+L SV+ A     
Sbjct: 226 RWEDIDCENRMIHINHSLVYYPVGESRTSVQHISKPKTKAGE-RTIPMLDSVQDAFEMLR 284

Query: 212 -EYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYI----------------RQLRRY 253
            E  +    D+ ++ +   +F    G   NP    R I                R+ R  
Sbjct: 285 EEQLENGWNDVEIDGMHGFIFCNRFGNVPNPQSVNRAIKRIVSDYNATEEISAKREHREA 344

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           + LP   +AH LRH+F T L     +L+ IQS++GH  + TT
Sbjct: 345 ILLP-DFSAHHLRHTFCTRLCEQETNLKVIQSVMGHKDIKTT 385


>gi|157372468|ref|YP_001480457.1| integrase family protein [Serratia proteamaculans 568]
 gi|157324232|gb|ABV43329.1| integrase family protein [Serratia proteamaculans 568]
          Length = 153

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 56/137 (40%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           GLR SE   LT  NI  D   + I    + + +   L      +L ++           Q
Sbjct: 9   GLRASELGGLTLDNIELDAKRIYIPRLKNGLSVQHPLHDNEIIMLNHWLEIRKSWRYADQ 68

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
             LF   +G P+      R IR   +   + + T  H LRH+    L + G D R IQ  
Sbjct: 69  PWLFLSRKGGPITRQQIYRLIRDYGKNANIQVPTHPHMLRHACGYFLANLGMDTRLIQDY 128

Query: 287 LGHFRLSTTQIYTNVNS 303
           LGH  +  T +YT  N+
Sbjct: 129 LGHRNIHHTVLYTASNA 145


>gi|15924992|ref|NP_372526.1| integrase [Staphylococcus aureus subsp. aureus Mu50]
 gi|49484247|ref|YP_041471.1| integrase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|118725054|ref|YP_908790.1| integrase [Staphylococcus phage phiNM3]
 gi|156980319|ref|YP_001442578.1| integrase [Staphylococcus aureus subsp. aureus Mu3]
 gi|253729788|ref|ZP_04863953.1| phage integrase [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|255006790|ref|ZP_05145391.2| integrase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|258434312|ref|ZP_05688713.1| integrase [Staphylococcus aureus A9299]
 gi|297589939|ref|ZP_06948579.1| integrase [Staphylococcus aureus subsp. aureus MN8]
 gi|14247775|dbj|BAB58164.1| integrase [Staphylococcus aureus subsp. aureus Mu50]
 gi|49242376|emb|CAG41088.1| integrase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|104641819|gb|ABF73161.1| integrase [Staphylococcus phage phiNM3]
 gi|156722454|dbj|BAF78871.1| integrase [Staphylococcus aureus subsp. aureus Mu3]
 gi|253726523|gb|EES95252.1| phage integrase [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|257849260|gb|EEV73241.1| integrase [Staphylococcus aureus A9299]
 gi|269941477|emb|CBI49874.1| integrase [Staphylococcus aureus subsp. aureus TW20]
 gi|297577067|gb|EFH95781.1| integrase [Staphylococcus aureus subsp. aureus MN8]
          Length = 345

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 73/148 (49%), Gaps = 5/148 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+S  L+++   G R+S A ++  ++I   ++T+ I  +  K    P   S+ K+ +++ 
Sbjct: 183 RSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDER--KTNTSPRYISIAKSDMKHI 240

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                   ++    +F+   G  +N       ++   R   +P+  T+H LRH+  ++LL
Sbjct: 241 MDVISTFAISYDGYIFKE-GGSIINLHAINNALKSACRVNNIPI-ITSHALRHTHCSYLL 298

Query: 275 SNGGDLRSIQSILGHFRLS-TTQIYTNV 301
           + G  +  I   LGH  ++ TT +Y+++
Sbjct: 299 AKGVSIHYISKRLGHKNIAITTSVYSHL 326


>gi|307708685|ref|ZP_07645148.1| tyrosine recombinase XerC [Streptococcus mitis NCTC 12261]
 gi|307615259|gb|EFN94469.1| tyrosine recombinase XerC [Streptococcus mitis NCTC 12261]
          Length = 356

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 99/255 (38%), Gaps = 43/255 (16%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--------PRALNEK 132
           Q +   ++ R+LS + S  KYL +     +      RN+ K  S          RA N K
Sbjct: 99  QGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIK 158

Query: 133 QALTLVDNVLLHTSHETKWID-------------------ARNSAILYLLYGCGLRISEA 173
           Q L L D     T     +ID                    R+ AI+ LL   G+R+SEA
Sbjct: 159 QKLFLGD----ETEGFLTYIDQEYPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEA 214

Query: 174 LSLTPQNI---MDDQSTLRIQGKGDKIRIV----PLLPSVRKAILEYYDLCPFDLNLNIQ 226
           ++L  +++   M      R  GK D + +     P L +      + Y     D  L   
Sbjct: 215 VNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKTDTALF-- 272

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           L L+RG+  + ++    ++ + +        +  T H LRH+ AT L         +   
Sbjct: 273 LTLYRGVPNR-IDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQ 329

Query: 287 LGHFRLSTTQIYTNV 301
           LGH     T +YT++
Sbjct: 330 LGHASTQVTDLYTHI 344


>gi|291459452|ref|ZP_06598842.1| site-specific recombinase, phage integrase family [Oribacterium sp.
           oral taxon 078 str. F0262]
 gi|291418051|gb|EFE91770.1| site-specific recombinase, phage integrase family [Oribacterium sp.
           oral taxon 078 str. F0262]
          Length = 348

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 76/185 (41%), Gaps = 45/185 (24%)

Query: 159 ILYLLYGCGLRISEALSLTPQNI------MDDQSTL-----RIQGKGDKI---------R 198
           I  ++ G GLR+ EA  L   +I      +D   TL      + G    I         R
Sbjct: 130 IFAIMIGTGLRVGEATGLRWCDIDLEDGFIDVNHTLVYYQHEVNGCYFNINTPKTEAGRR 189

Query: 199 IVPLLPSVRKAILE---------YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           IVP+L  V++A LE            L   D   +    +F    G   +     + IR+
Sbjct: 190 IVPMLDFVKEAFLEEKHRQEREGIRSLAQVDGYADF---IFVNRFGMLQHQSTLNKAIRR 246

Query: 250 LRR------YLGLPLST------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
           + R       L  P +T      + H+LRH+F T +   G +++ IQ  LGH  +STT  
Sbjct: 247 ITRDCNDEVLLKDPEATVLLPHFSCHSLRHTFTTRMCEAGVNVKVIQDTLGHADISTTLN 306

Query: 297 IYTNV 301
           IY +V
Sbjct: 307 IYADV 311


>gi|240172574|ref|ZP_04751233.1| integrase [Mycobacterium kansasii ATCC 12478]
          Length = 55

 Score = 41.6 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           TAHTLRH  A+       ++R++Q++LGH  + TTQ Y  +
Sbjct: 2   TAHTLRHRMASRAFRGSRNIRAVQALLGHESILTTQRYVAI 42


>gi|222107069|ref|YP_002547860.1| Integrase [Agrobacterium vitis S4]
 gi|221738248|gb|ACM39144.1| Integrase [Agrobacterium vitis S4]
          Length = 344

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 56/147 (38%), Gaps = 11/147 (7%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           A+  LLY  G R S+ + +  Q++ D   ++  Q  G  + I         A  +  +  
Sbjct: 190 ALSLLLY-TGQRRSDVVRMGRQHVRDGWISIVQQKTGQLVEI-----PFHAAFKDVLNAL 243

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
           P        +      +GKP  P  F  + R + +  GLP   + H LR +    L   G
Sbjct: 244 PLK-----NMTFLTTAQGKPFTPAGFTNWFRDMTKEAGLPDKLSPHGLRKAACRRLAEAG 298

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSK 304
                I +I GH  L     YT   S+
Sbjct: 299 CTPHQIMAISGHQSLDEVTRYTVAASR 325


>gi|20092590|ref|NP_618665.1| integrase [Methanosarcina acetivorans C2A]
 gi|19917867|gb|AAM07145.1| integrase [Methanosarcina acetivorans C2A]
          Length = 390

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 15/183 (8%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQ--STLRIQGKGDKIRI-VPLLPSVRKA 209
           +AR+ AI+ LLY  G RI E   +  +NI  DQ  + + + GK    R+ V    S   A
Sbjct: 146 NARDKAIIALLYDSGCRIGELGGVKIKNITFDQYGAVVVVSGKTGARRVRVTFAASYLAA 205

Query: 210 ILEYYDLCPFDLNLNIQLPL-FRGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
            L   D+ P+       + +   G+ +G+ +    FQ  ++++ +  G+      H  RH
Sbjct: 206 WL---DVHPYKEKSEAFVFINLEGVKKGEQMQYQAFQYTLKKIAKAAGIEKRIHLHLFRH 262

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIY-----DQTHPSI 321
           S +T L     + + ++  LG  + S   + Y +++ K   D ++ IY     + T P +
Sbjct: 263 SRSTELAQYLTEAQ-MEEHLGWAQGSEMPRTYVHLSGKQIDDAILGIYGKKKKEDTMPKL 321

Query: 322 TQK 324
           T +
Sbjct: 322 TSR 324


>gi|333030040|ref|ZP_08458101.1| integrase family protein [Bacteroides coprosuis DSM 18011]
 gi|332740637|gb|EGJ71119.1| integrase family protein [Bacteroides coprosuis DSM 18011]
          Length = 410

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIY---TNV 301
           Y++++     +  + T H  RH+F+T + LS G  + S+  +LGH  + TTQIY   TN 
Sbjct: 327 YLKEIADLCNVKKNLTFHMARHTFSTTITLSQGVPIESVSKMLGHTNIRTTQIYARITNE 386

Query: 302 NSKNGGDWMME 312
              N  D + E
Sbjct: 387 KVSNDMDILSE 397


>gi|291544270|emb|CBL17379.1| Site-specific recombinase XerD [Ruminococcus sp. 18P13]
          Length = 397

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVN 302
           H LRHS A+ L +NG  L+ IQ  LGH  +STT  IYT++N
Sbjct: 339 HDLRHSCASLLYANGVSLKEIQEWLGHSDISTTSNIYTHLN 379


>gi|257885974|ref|ZP_05665627.1| phage integrase [Enterococcus faecium 1,231,501]
 gi|257900175|ref|ZP_05679828.1| phage integrase [Enterococcus faecium Com15]
 gi|293377986|ref|ZP_06624165.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium PC4.1]
 gi|293556619|ref|ZP_06675186.1| integrase/recombinase [Enterococcus faecium E1039]
 gi|315642366|ref|ZP_07896983.1| phage integrase [Enterococcus italicus DSM 15952]
 gi|325571761|ref|ZP_08147142.1| phage integrase family prophage LambdaSa2 [Enterococcus
           casseliflavus ATCC 12755]
 gi|257821830|gb|EEV48960.1| phage integrase [Enterococcus faecium 1,231,501]
 gi|257838087|gb|EEV63161.1| phage integrase [Enterococcus faecium Com15]
 gi|291601237|gb|EFF31522.1| integrase/recombinase [Enterococcus faecium E1039]
 gi|292643401|gb|EFF61532.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium PC4.1]
 gi|315482305|gb|EFU72857.1| phage integrase [Enterococcus italicus DSM 15952]
 gi|325155657|gb|EGC67858.1| phage integrase family prophage LambdaSa2 [Enterococcus
           casseliflavus ATCC 12755]
          Length = 183

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 9/151 (5%)

Query: 153 DARNSAILYLL-YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           +A     L+L+    GLR+S+ + L  ++++  ++   ++ K  K RI+  L S++  I 
Sbjct: 26  NAERDVFLFLIGINSGLRMSDIVKLKKKDVITSKNPRIVEQKTGKTRIL-YLSSLQDLIH 84

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
            Y    P D     +  LF   +G  L      +  +++ + LG       HTLR +F  
Sbjct: 85  GY--TAPLD----PEAYLFPSTKGGHLEVNTVYQMFQKVAKLLGRD-DIGTHTLRKTFGY 137

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           H      D+ ++  I GH     T+ Y  +N
Sbjct: 138 HYYKKTKDVATLMEIFGHSSEKITKRYIGIN 168


>gi|253581231|ref|ZP_04858488.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847508|gb|EES75481.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 411

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 135/315 (42%), Gaps = 49/315 (15%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + WL+  ++ R + + +   YE D R+F+    F   E      +  ++   +  FI   
Sbjct: 99  EEWLEYKKLYRLIKEPSAIRYETDYRRFIYGTDFGNTE------VADVTEEMLEKFI--- 149

Query: 79  RTQKIGDRSL-KRSLSGIKSFL----KYLKKRKITTESNILNMRNLKKSNSLPRAL---N 130
               I D +L  ++ SG+++ +    KY KKRK T+ S      +L+ S ++ R +   +
Sbjct: 150 -ISAIFDNNLTAKAFSGLRTIIIGMFKYAKKRKYTSISITSFFGDLELSPNMFRHVVKND 208

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--------- 181
           E +  T  + V   +++  +    RN  +L L +  GLR+ E   LTP +I         
Sbjct: 209 EDEVFTDFE-VRQISNYVKEHPTIRNLGVL-LAFHTGLRVGELTVLTPDDIDWKNHILLI 266

Query: 182 ------MDDQSTLRI------QGKGD-KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
                 + D++T +       QGK +   R V    S    + +   + P    L  + P
Sbjct: 267 NKTEIKIKDKTTGKYTYAVSDQGKTENSTRNVVFTDSAEWVLHQIIKINPHGKYL-FENP 325

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
             + IRG  +N     + +  + R LG+    + H  R S+AT LL  G     I S LG
Sbjct: 326 EGKRIRGTTMN-----KRLHGICRALGIK-ERSIHKSRKSYATQLLDAGIGDALIISQLG 379

Query: 289 HFRLSTTQIYTNVNS 303
           H  + TT+ +   NS
Sbjct: 380 HSDILTTKKHYYRNS 394


>gi|10957411|ref|NP_051636.1| integrase/recombinase XerD, putative [Deinococcus radiodurans R1]
 gi|6460840|gb|AAF12544.1|AE001826_13 integrase/recombinase XerD, putative [Deinococcus radiodurans R1]
          Length = 344

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 68/159 (42%), Gaps = 19/159 (11%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVRKAI 210
           D     IL L    GLR+SE   L   ++  D     L + GK  K + VPL  ++ KA+
Sbjct: 191 DLEEKVILLLGAHAGLRVSEIAGLQRVDVHLDGEHPYLMVTGKHQKRQGVPLSRTLAKAL 250

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG---VFQRYIRQLRRYLGLPLST-TAHTLR 266
             +    P DL   +            L+ G     Q  ++ +    G+P S    H LR
Sbjct: 251 SLWLSATP-DLGPRV------------LSAGSVDYVQGRVKAVCERTGVPYSRRQVHGLR 297

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           HS  T + S+  DL +++  L H  +++++IY     K 
Sbjct: 298 HSAGTRIYSDTSDLLAVRDHLRHADITSSEIYVEYARKT 336


>gi|87309792|ref|ZP_01091926.1| phage-related integrase [Blastopirellula marina DSM 3645]
 gi|87287556|gb|EAQ79456.1| phage-related integrase [Blastopirellula marina DSM 3645]
          Length = 292

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 18/137 (13%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD-KIRIVPLLPSVRKAILEYYDL 216
           +L  LY  G R  EA ++  +++ DD       + KG+ + R++ L+P   KAIL     
Sbjct: 135 LLDFLYLTGCRPLEARTIEARHLHDDLVIFPTDESKGEHEARVIYLVPEA-KAILR---- 189

Query: 217 CPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                 L    P   LFR  RG P         + ++ + +G      A+  RHSFAT  
Sbjct: 190 -----RLAKDRPSGILFRNTRGLPWTKNAIICQLTRVSKTVGF--RVIAYGARHSFATEA 242

Query: 274 LSNGG-DLRSIQSILGH 289
           L+ GG D  S+  ++GH
Sbjct: 243 LTKGGVDPISVAHLMGH 259


>gi|325678355|ref|ZP_08157975.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324109856|gb|EGC04052.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 403

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 7/109 (6%)

Query: 193 KGDK-IRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRY 246
           K DK  R+V L P+V K +  Y +D   +  NL  +      LF    G P++P     +
Sbjct: 267 KTDKSTRLVDLPPTVIKLLKAYKHDQDSYKANLGDKWQEHDRLFTKWDGAPMHPATPYSW 326

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           +++       P     HTLRH FA+  +  G D  ++ ++LGH    TT
Sbjct: 327 LKKECERRSFPFYGV-HTLRHFFASVEIEAGVDPTTVAAMLGHSTPQTT 374


>gi|188585737|ref|YP_001917282.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350424|gb|ACB84694.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 189

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 78/181 (43%), Gaps = 13/181 (7%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           ++P ALN ++      N LL        +  R+  I+ L+   GLR+ E  SL   N+  
Sbjct: 4   TVPVALNREE-----QNSLLRVPERNTVMGLRDLIIMNLILNYGLRLYELRSLRWDNLDL 58

Query: 184 DQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG--IRGKPLNP 240
             + + I + KG   R + L  +  K +  + D      + +  +    G  I G  +  
Sbjct: 59  HANMIYIPKSKGSFGRKLQLRLADYKLLNTWKDTQNQYFSTSYVITTLSGNVISGSYIE- 117

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            + QRY ++     G+    T H LRH FA       GDL  +Q +LGH   STT+ Y  
Sbjct: 118 SILQRYSQKA----GISKRLTPHILRHVFAVDSYKKTGDLDKVQELLGHRFRSTTEEYLK 173

Query: 301 V 301
           +
Sbjct: 174 I 174


>gi|332884390|gb|EGK04653.1| hypothetical protein HMPREF9456_03395 [Dysgonomonas mossii DSM
           22836]
          Length = 336

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 21/161 (13%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           LLY CGLR++EA  L  +++  +   L + + K  K R +PL   +     EY       
Sbjct: 145 LLYCCGLRVTEARLLKVEDVDLENGILSLTRTKLSKHRQIPLSLELLNRFKEYSQ--KIH 202

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQL----------RRYLGLPLSTTAHTLRHSFA 270
           +    +   F G++   +      R +R+           R  LG P +   H+LRH+FA
Sbjct: 203 ICSTSETWFFPGLKNNAMTSQNINRNLRRFLWNAGISHSGRAKLGEPGAPCVHSLRHTFA 262

Query: 271 THLL----SNGGDLRS----IQSILGHFRLSTTQIYTNVNS 303
            + L      G +L +    +Q+ +GH     T  Y +++S
Sbjct: 263 VNCLRKWMRQGKNLNAYLPILQAYMGHTYYRDTAYYLHLSS 303


>gi|315613177|ref|ZP_07888087.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis ATCC 49296]
 gi|315314739|gb|EFU62781.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis ATCC 49296]
          Length = 356

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 99/255 (38%), Gaps = 43/255 (16%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--------PRALNEK 132
           Q +   ++ R+LS + S  KYL +     +      RN+ K  S          RA N K
Sbjct: 99  QGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIK 158

Query: 133 QALTLVDNVLLHTSHETKWID-------------------ARNSAILYLLYGCGLRISEA 173
           Q L L D     T     +ID                    R+ AI+ LL   G+R+SEA
Sbjct: 159 QKLFLGD----ETEGFLTYIDQEYPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEA 214

Query: 174 LSLTPQNI---MDDQSTLRIQGKGDKIRIV----PLLPSVRKAILEYYDLCPFDLNLNIQ 226
           ++L  +++   M      R  GK D + +     P L +      + Y     D  L   
Sbjct: 215 VNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKTDTALF-- 272

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           L L+RG+  + ++    ++ + +        +  T H LRH+ AT L         +   
Sbjct: 273 LTLYRGVPNR-IDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQ 329

Query: 287 LGHFRLSTTQIYTNV 301
           LGH     T +YT++
Sbjct: 330 LGHASTQVTDLYTHI 344


>gi|313206734|ref|YP_004045911.1| integrase family protein [Riemerella anatipestifer DSM 15868]
 gi|312446050|gb|ADQ82405.1| integrase family protein [Riemerella anatipestifer DSM 15868]
 gi|315023805|gb|EFT36807.1| phage integrase family protein [Riemerella anatipestifer RA-YM]
 gi|325335826|gb|ADZ12100.1| integrase [Riemerella anatipestifer RA-GD]
          Length = 402

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFA-THLLSNGGDLRSIQSILGHFRLSTTQIY 298
           F R ++++   L +P + T HT R +FA T LL+N   +  I  +LGH +++TTQ Y
Sbjct: 325 FNRLLKEIAFVLKIPKNLTHHTGRKTFASTVLLNNDIPIEVISKLLGHSKITTTQEY 381


>gi|229496267|ref|ZP_04389987.1| integrase [Porphyromonas endodontalis ATCC 35406]
 gi|229316845|gb|EEN82758.1| integrase [Porphyromonas endodontalis ATCC 35406]
          Length = 416

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 42/201 (20%)

Query: 123 NSLPRALNEK-----QALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALS 175
           N  PRAL+       QALT          +E +   ARN      L+ C  G+   + + 
Sbjct: 227 NKQPRALDRASLDKLQALTF-------EPYEVELETARN----LFLFSCFTGVAYCDMVV 275

Query: 176 LTPQNIM-DDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           L  +++  DD+    ++    K D +  V LLP     I  Y          + +  LF 
Sbjct: 276 LNREHLFTDDKGAWWLKFRRQKTDTLCRVKLLPEAVHLIERYQS--------DERTTLF- 326

Query: 232 GIRGKPLNPGVFQRYIRQLRRY---LGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSIL 287
                   P V+  Y+ QL+      G+ ++ +AH  RH+FAT + L  G  + ++  +L
Sbjct: 327 -------APIVYSAYLIQLKALQLRAGISITLSAHVGRHTFATLITLERGVPIETVSRML 379

Query: 288 GHFRLSTTQIYTNVNSKNGGD 308
           GH  + TT+ Y  V  K   D
Sbjct: 380 GHSNIQTTERYAYVTPKKLFD 400


>gi|302338977|ref|YP_003804183.1| integrase family protein [Spirochaeta smaragdinae DSM 11293]
 gi|301636162|gb|ADK81589.1| integrase family protein [Spirochaeta smaragdinae DSM 11293]
          Length = 420

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 11/150 (7%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           L++  G R S  L L  +++  D  T R+  K    R +P++    KA+ E  D     L
Sbjct: 245 LMFATGERPSAILRLNWEDVDSDMITFRVT-KAAGARSIPIVTMATKALRELSDSM---L 300

Query: 222 NLNIQLPLF-RGIRGKPLNPGVFQRYIRQLRRYLGLPLST------TAHTLRHSFATHLL 274
           ++    P+F     G+ L    F +    +   L LP +       T ++L+ S  THL+
Sbjct: 301 HVAPADPVFCHDDTGQRLTYAFFPKRFAHMMATLDLPTNDADGRKRTPYSLKSSLITHLI 360

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             G D   ++  +GH   +  +  T V S+
Sbjct: 361 DGGADPILVREYVGHSHGTGEKRLTKVQSR 390


>gi|83945755|ref|ZP_00958099.1| phage integrase [Oceanicaulis alexandrii HTCC2633]
 gi|83850845|gb|EAP88706.1| phage integrase [Oceanicaulis alexandrii HTCC2633]
          Length = 310

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 61/152 (40%), Gaps = 29/152 (19%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKIR---IVPLLPSVRKAILEYYD 215
           L LL   G R S+   + PQ+I+D Q   R I+ K  K +   ++P+LP           
Sbjct: 152 LALLLCTGQRGSDVARMGPQDIVDIQGGSRAIRVKQQKTKTPLLIPILP----------- 200

Query: 216 LCPFDLNLNIQLPLFRGIR--------GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                  L ++L    G          GK  +   FQ++  +  +        TAH LR 
Sbjct: 201 ------ELAVELAARNGKHMVFLTTEYGKAFSVKGFQQWFAERAKAATGNPKCTAHGLRK 254

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           + A  L   G  +  IQSI GH  L+    YT
Sbjct: 255 ACAYRLAEAGATVHMIQSITGHKTLAEVARYT 286


>gi|83749581|ref|ZP_00946566.1| Hypothetical Protein RRSL_00421 [Ralstonia solanacearum UW551]
 gi|83723736|gb|EAP70929.1| Hypothetical Protein RRSL_00421 [Ralstonia solanacearum UW551]
          Length = 197

 Score = 41.2 bits (95), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 54/133 (40%), Gaps = 18/133 (13%)

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNP 240
           D   L + GKG +   V L P  R AI  Y     L       + + P+  G+   P   
Sbjct: 45  DDHWLNLVGKGSRAGKVALPPLARAAIDRYLVERGLPITRARWDPKTPMIGGLGLDPNGS 104

Query: 241 GVFQRYIRQLRRYL---------GLPL------STTAHTLRHSFATHLLSNGGDLRSIQS 285
               R    +RR+            PL        + H +RH+ ATH L+ G +L +++ 
Sbjct: 105 ITGTRLWSVVRRFFWSAAEIIDSDHPLLAEKLRKASPHWMRHTHATHALARGAELTTVRD 164

Query: 286 ILGHFRLSTTQIY 298
            L H  +STT IY
Sbjct: 165 NLRHASVSTTSIY 177


>gi|189499195|ref|YP_001958665.1| integrase family protein [Chlorobium phaeobacteroides BS1]
 gi|189494636|gb|ACE03184.1| integrase family protein [Chlorobium phaeobacteroides BS1]
          Length = 384

 Score = 41.2 bits (95), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 31/58 (53%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           G+    T H+ RH+FA   L NG D+ ++  +LGH  +  T IY ++  K   + M E
Sbjct: 320 GITKHLTFHSGRHTFAVLQLENGTDIYTLSKLLGHREIEVTAIYADILDKKRREAMTE 377


>gi|331666613|ref|ZP_08367487.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli TA271]
 gi|330910118|gb|EGH38628.1| putative DNA recombinase [Escherichia coli AA86]
 gi|331065837|gb|EGI37721.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli TA271]
          Length = 156

 Score = 41.2 bits (95), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LF   + +P++   F   IR+  +  GL +    H LRH+    L  NG D R +Q  LG
Sbjct: 70  LFLSRKRRPISRQHFFSIIREAGKRAGLAVKAHPHMLRHACGFALADNGVDTRLLQDYLG 129

Query: 289 HFRLSTTQIYTNVNS 303
           H  +  T  YT  N+
Sbjct: 130 HRNIQHTVRYTASNA 144


>gi|281424189|ref|ZP_06255102.1| integrase [Prevotella oris F0302]
 gi|281401458|gb|EFB32289.1| integrase [Prevotella oris F0302]
          Length = 414

 Score = 41.2 bits (95), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 261 TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           T H  RH+ AT + LSNG  + S+ S+LGH  +S+TQIY  + ++
Sbjct: 344 TWHMARHTMATVVCLSNGMPIESVSSVLGHKCISSTQIYAKITNE 388


>gi|237729521|ref|ZP_04560002.1| gp27 [Citrobacter sp. 30_2]
 gi|226908127|gb|EEH94045.1| gp27 [Citrobacter sp. 30_2]
          Length = 123

 Score = 41.2 bits (95), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-----HTLRHSFATHLLSN 276
           N  + +P +      PL   ++    ++ ++ L L     A     H LRH+FA+H + N
Sbjct: 11  NRTVPIPQWLCYELDPLQGKMYHPCYQEFKKMLALTDIQLAEGQKTHVLRHTFASHFMIN 70

Query: 277 GGDLRSIQSILGHFRLSTTQIYTN 300
            G++  +Q ILGH  +  T  Y +
Sbjct: 71  CGNILVLQQILGHANIRETMRYAH 94


>gi|221218507|ref|YP_002527465.1| putative site-specific recombinase [Escherichia coli]
 gi|253800994|ref|YP_003033995.1| site-specific recombinase [Escherichia coli Vir68]
 gi|310286471|ref|YP_003937732.1| site-specific recombinase [Escherichia coli]
 gi|215252835|gb|ACJ63494.1| putative site-specific recombinase [Escherichia coli]
 gi|253721171|gb|ACT33480.1| site-specific recombinase [Escherichia coli Vir68]
 gi|308826800|emb|CBX36068.1| site-specific recombinase [Escherichia coli]
 gi|323184033|gb|EFZ69412.1| resolvase [Escherichia coli 1357]
 gi|324115871|gb|EGC09800.1| phage integrase [Escherichia coli E1167]
 gi|332346631|gb|AEE59962.1| site-specific recombinase [Escherichia coli UMNK88]
          Length = 246

 Score = 41.2 bits (95), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 40/173 (23%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRI----------QGKGDKIRIV 200
           D R+  +   L+  G+RI EA  LTP++   D  +  +RI          +   D++R+V
Sbjct: 59  DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLV 118

Query: 201 PL--LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL---NPGVFQRYIRQLRR--- 252
           PL  +  VR+  +E + +              R  R +PL        + +++Q  R   
Sbjct: 119 PLTDISYVRQ--MESWMIT------------TRPRRREPLWAVTDETMRNWLKQAVRRAE 164

Query: 253 ----YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               +  +P+  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 165 ADGVHFSIPV--TPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|177654275|ref|ZP_02936204.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0174]
 gi|172080765|gb|EDT65846.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0174]
          Length = 376

 Score = 41.2 bits (95), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 67/159 (42%), Gaps = 37/159 (23%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQ-------GKGD--------KIRIVPLLPSVRKAIL 211
           G+RI E L+L  ++I  +   + +Q       GK +          R++P+   + +  L
Sbjct: 198 GMRIGEVLALQWKDINFESKVIHVQRTLTLVDGKYELGETKTEASNRMIPMTQELMREPL 257

Query: 212 EY--------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           EY        +DL     N  I  P     + K L   +   YIR              H
Sbjct: 258 EYQSHKKDNSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYIR-------------FH 304

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
            +R +F T L+ +G + + +  +LGH  +STT  IYT+V
Sbjct: 305 DIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDV 343


>gi|159897208|ref|YP_001543455.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890247|gb|ABX03327.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 287

 Score = 41.2 bits (95), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 70/163 (42%), Gaps = 25/163 (15%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R  A+L +L   G+R+SE + L  +   D +    I GKG K R +  + SV + +L  Y
Sbjct: 122 REKAMLCVLLDTGVRVSELIQLR-RTSFDSEGCAMILGKGSKDRYI-WISSVTQEVLRTY 179

Query: 215 DLCPFDLNLNIQLPLFRGIRG-KPLN-PGVFQRYIR---------QLRRYLGLPLSTTAH 263
                D N      LF   R  K L   GV Q + R          +RR +        H
Sbjct: 180 IASRTDTNP----ALFVSHRQQKTLTISGVHQSFDRVASDAEIRNDVRRLI--------H 227

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           + R +FA  L+  G D  S++ ++GH  +  +  Y  ++S   
Sbjct: 228 SFRATFARELIKKGLDAESLRVLMGHETIQMSLHYAQLSSHEA 270


>gi|264678073|ref|YP_003277980.1| phage integrase [Comamonas testosteroni CNB-2]
 gi|262208586|gb|ACY32684.1| phage integrase [Comamonas testosteroni CNB-2]
          Length = 389

 Score = 41.2 bits (95), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 11/88 (12%)

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN--------GGD 279
           PLF    G P         +R L + +  P+  TAH LRH++AT+LL +        G  
Sbjct: 282 PLFLTEAGVPYPKDAITAIMRALAKRVEFPV--TAHMLRHTYATYLLWSLRKSKTFEGEP 339

Query: 280 LRSIQSILGHFRLSTTQIYTN-VNSKNG 306
           L  ++  LGH  +STT IY   +NS  G
Sbjct: 340 LLYVRDRLGHRDVSTTMIYLPLINSLEG 367


>gi|94442242|dbj|BAE93620.1| integron integrase [uncultured bacterium]
          Length = 211

 Score = 41.2 bits (95), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 81/198 (40%), Gaps = 50/198 (25%)

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           N+   K+   LP  L++ +  TL+DN           +   N  I  L+YG G+R  E L
Sbjct: 26  NVVRAKRPKRLPVVLSQAEVCTLLDN-----------MSGINGLIARLIYGTGMRKMECL 74

Query: 175 SLTPQNI-MDDQSTLRIQGKGDKIRI--------VPL---LPSVR----KAILEYYDLCP 218
            L   ++  D +  +   GKG+K R+         PL   L +VR    K + E Y    
Sbjct: 75  RLRVTDVDFDYRQIIVRSGKGNKDRVTLLPECLCTPLREQLENVRQIHGKDLEEGYGEVG 134

Query: 219 FDLNLNIQLP----------LFRGIRGKPLNP--GVFQRY----------IRQLRRYLGL 256
               L+ + P          +F   R + ++P  GV +R+          IRQ      +
Sbjct: 135 LPFALDRKYPNAGREWKWQYVFPSTR-RSVDPLTGVIRRHHWYDTNVSRAIRQSVYNTRI 193

Query: 257 PLSTTAHTLRHSFATHLL 274
                 HTLRHS ATHLL
Sbjct: 194 NKQVGVHTLRHSVATHLL 211


>gi|292905278|ref|YP_003541149.1| phage integrase [Anabaena variabilis ATCC 29413]
 gi|75705016|gb|ABA24691.1| Phage integrase [Anabaena variabilis ATCC 29413]
          Length = 309

 Score = 41.2 bits (95), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 106/230 (46%), Gaps = 24/230 (10%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLP--RALNEKQALT 136
           +K    +  + L+ ++  LK  ++    T  +     ++K  KS+ LP  RAL+  +   
Sbjct: 75  EKYAPATANKMLAALRRVLKEAQRLGQMTPEDYAKAADIKRVKSSGLPKGRALSSDELGK 134

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGD 195
           L+ NV +    +      R++A+L +L   GLR  E ++L   ++  ++ +++++G KG 
Sbjct: 135 LL-NVCVE---DESIFGVRDAAMLMILR-VGLRRGEVVNLDLADLDLNEGSVKVRGGKGR 189

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ--LRRY 253
           K R+V   P    A L+ +     D +  + LP+ +          V++R   Q  L   
Sbjct: 190 KDRVV-FFPESAIAYLQKWVKIRGDDSSPLLLPISKS------GNLVWRRLSDQAVLSIM 242

Query: 254 LGLPLST-----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           LG          T H  R +FA  LL  G D+ ++Q ++GH   +TT  Y
Sbjct: 243 LGRGEEAGIENFTPHDFRRTFAGDLLDAGVDIVTVQKLMGHADPATTAKY 292


>gi|150018430|ref|YP_001310684.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149904895|gb|ABR35728.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 375

 Score = 41.2 bits (95), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 113/261 (43%), Gaps = 40/261 (15%)

Query: 80  TQKIGDRSLKRSLSG----IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +  I DR LK+ +S      K FL  +   +    SNIL    LK   S P+ L  K+ +
Sbjct: 126 SNNISDR-LKKFVSAPGRNFKGFLYGIAHEQKKVTSNILR---LKVPKSKPKTLT-KEEI 180

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           T    +L++T +     + R+  +L LLY  G+RI EALSL  ++       + ++ +G+
Sbjct: 181 T----ILINTCN-----NFRDKFLLNLLYETGIRIGEALSLWIEDFDISDMIIDLKDRGE 231

Query: 196 --------------KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
                         +I I   L  +    +  Y     + N ++ + +  G + KP+N  
Sbjct: 232 LENNAEIKTVSSPRRIDISQNLADIFMEYVAEYHTEEVETN-HVFIKISGGNQYKPMNYT 290

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTN 300
                 R L++     +  T H  RHS  T L   G +   ++   GH  + TT Q Y +
Sbjct: 291 DVDNLFRILKK--KTEIHVTPHMFRHSSLTILRMAGWEPELLRVRAGHKNIYTTMQTYIH 348

Query: 301 VNSKNGGDWMMEIYDQTHPSI 321
            + K     + E +++T P++
Sbjct: 349 PSDKE----ITEEFNKTQPNL 365


>gi|295407330|ref|ZP_06817128.1| phage integrase [Staphylococcus aureus A8819]
 gi|297246409|ref|ZP_06930251.1| phage integrase [Staphylococcus aureus A8796]
 gi|294967775|gb|EFG43806.1| phage integrase [Staphylococcus aureus A8819]
 gi|297176680|gb|EFH35941.1| phage integrase [Staphylococcus aureus A8796]
          Length = 353

 Score = 41.2 bits (95), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 73/148 (49%), Gaps = 5/148 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+S  L+++   G R+S A ++  ++I   ++T+ I  +  K    P   S+ K+ +++ 
Sbjct: 191 RSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDER--KTDTSPRYISIAKSDMKHI 248

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                   ++    +F+   G  +N       ++   R   +P+  T+H LRH+  ++LL
Sbjct: 249 MDVISTFAISYDGYIFKEA-GSIINLQAINNALKSACRVNNIPI-ITSHALRHTHCSYLL 306

Query: 275 SNGGDLRSIQSILGHFRLS-TTQIYTNV 301
           + G  +  I   LGH  ++ TT +Y+++
Sbjct: 307 AKGVSIHYISKRLGHKNIAITTSVYSHL 334


>gi|253573180|ref|ZP_04850548.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251837232|gb|EES65356.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 81

 Score = 41.2 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           H+LRHS A+++L NG  +  I  +LGH    TT  Y  +N
Sbjct: 14  HSLRHSLASNMLENGATMPIISEVLGHRNTETTMTYLKIN 53


>gi|229553105|ref|ZP_04441830.1| integrase [Lactobacillus rhamnosus LMS2-1]
 gi|258540280|ref|YP_003174779.1| phage-related integrase [Lactobacillus rhamnosus Lc 705]
 gi|229313602|gb|EEN79575.1| integrase [Lactobacillus rhamnosus LMS2-1]
 gi|257151956|emb|CAR90928.1| Phage-related integrase [Lactobacillus rhamnosus Lc 705]
          Length = 308

 Score = 41.2 bits (95), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 62/147 (42%), Gaps = 11/147 (7%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP------SVRKAILE 212
            L L+   GLR  EAL +TP +    + TL I    D               SVRK  L+
Sbjct: 138 FLLLIAKTGLRFGEALGVTPADFDMAKLTLTINKTWDYKSATGSFAETKNTASVRKVPLD 197

Query: 213 YYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +     F     NL    P+F     +  N        R+ +R   +P+  + H LRH+ 
Sbjct: 198 WQVAMQFATLIKNLPQDRPIFVTEGQRVYNETANDILERKCKR-ASIPV-ISIHGLRHTH 255

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           A+ LL  G  + S+   LGH  +STTQ
Sbjct: 256 ASLLLYAGVSVGSVARRLGHANMSTTQ 282


>gi|212695061|ref|ZP_03303189.1| hypothetical protein BACDOR_04599 [Bacteroides dorei DSM 17855]
 gi|212662377|gb|EEB22951.1| hypothetical protein BACDOR_04599 [Bacteroides dorei DSM 17855]
          Length = 410

 Score = 41.2 bits (95), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 13/106 (12%)

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           + LL   +  I +Y D+ P D  L + +P +   +            I+ + +  G+  +
Sbjct: 293 IRLLDVAKHIIEKYRDMAP-DGKL-LPVPCYNNCKNS----------IKAIAKRCGIEKN 340

Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            T H  RH++AT + LSN   + ++  +LGH  + TTQIY  + ++
Sbjct: 341 VTWHMSRHTYATTVCLSNDVPIETLSKMLGHRSIRTTQIYAKITAE 386


>gi|167760713|ref|ZP_02432840.1| hypothetical protein CLOSCI_03098 [Clostridium scindens ATCC 35704]
 gi|167661600|gb|EDS05730.1| hypothetical protein CLOSCI_03098 [Clostridium scindens ATCC 35704]
          Length = 354

 Score = 41.2 bits (95), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 30/162 (18%)

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRI----QGKGDKIRIVP----------LLPSVRK 208
           LY  G+R+ E L+LTP+++  ++ T+ I    Q  G K  I P           +P    
Sbjct: 190 LYWTGMRLGELLALTPKDVDLEKRTISITKSYQRLGRKDVITPPKTPKSKRVITIPEFLA 249

Query: 209 AILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           A ++ Y    +DL  + +L P+ +      +  G+ +  ++++R           H LRH
Sbjct: 250 ADIKDYMDSLYDLQEDDRLFPITKYYLEHEMQRGIKESGVKRIR----------LHDLRH 299

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTT-----QIYTNVNSK 304
           S A+ L+  G     I + LGH ++ TT      +Y N  +K
Sbjct: 300 SHASLLIELGFSPLEIANRLGHEKVETTLNTYAHLYPNKQAK 341


>gi|154499800|ref|ZP_02037838.1| hypothetical protein BACCAP_03457 [Bacteroides capillosus ATCC
           29799]
 gi|150271398|gb|EDM98655.1| hypothetical protein BACCAP_03457 [Bacteroides capillosus ATCC
           29799]
          Length = 385

 Score = 41.2 bits (95), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKN 305
           + H LRH+F T L  +  D++ IQ ++GH   STT  IYT++  ++
Sbjct: 325 SVHNLRHTFCTRLCESTNDIKFIQQVMGHADFSTTMDIYTHITQES 370


>gi|116255543|ref|YP_771376.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115260191|emb|CAK03295.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 306

 Score = 41.2 bits (95), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 118/297 (39%), Gaps = 36/297 (12%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           Q L++ R L    LQ+ E   R F+ +     E ++T +T    +            + +
Sbjct: 10  QYLKLRRSLG-FKLQTQESRLRNFVRYATDRGELRVTAKTAVDWA------------SHQ 56

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTE---SNILNMRNLKKSNSLPRALNEKQALTLVD 139
            G  +    LS +++F ++L+     TE   S+I   +   +    P   +++Q   L+ 
Sbjct: 57  CGPATWSSRLSTVRAFARHLQVVDPQTEIPPSHIFPPQRRPR----PFIYSDEQIADLLK 112

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR 198
           ++L    H   +          LL   GLR SEA  L  ++   +  TL I + K  K R
Sbjct: 113 SML--DLHPGSFRGPTYHYFFGLLASTGLRFSEAARLLREDADLEAGTLTIRETKFGKTR 170

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL---NPGV-FQRYIRQLR-RY 253
           IVPL  S   A+  Y  +        +    F G  G+ L   NP   F R+ RQ   R 
Sbjct: 171 IVPLHHSTTLALRRYASIRDDHPVRRVSKYFFTGDLGRALIHTNPHFSFIRWTRQAGLRQ 230

Query: 254 LGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQ-------SILGHFRLSTTQIYTNVN 302
                    H LRH+FA   LLS   D   I+       + LGH  +S T  Y   +
Sbjct: 231 PDKRDGPRIHDLRHTFAVRTLLSWYRDCEDIERRLPELSTYLGHNHVSATYWYLTAH 287


>gi|18026939|gb|AAL55702.1|AF246719_6 probable site-specific recombinase [Escherichia coli]
 gi|57281857|emb|CAC80510.1| hypothetical protein [Escherichia coli]
          Length = 236

 Score = 41.2 bits (95), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 40/173 (23%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQS------------TLRIQGKGDKIRIV 200
           D R+  +   L+  G+RI EA  LTP++   D +              R +   D++R+V
Sbjct: 49  DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGARPFVRILSEKVRARRGRPPKDEVRLV 108

Query: 201 PL--LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL---NPGVFQRYIRQLRR--- 252
           PL  +  VR+  +E + +              R  R +PL        + +++Q  R   
Sbjct: 109 PLTDISYVRQ--MESWMIT------------TRPRRREPLWAVTDETMRNWLKQAVRRAE 154

Query: 253 ----YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               +  +P+  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 155 ADGVHFSIPV--TPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 205


>gi|296110926|ref|YP_003621307.1| integrase [Leuconostoc kimchii IMSNU 11154]
 gi|295832457|gb|ADG40338.1| integrase [Leuconostoc kimchii IMSNU 11154]
          Length = 375

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 53/98 (54%), Gaps = 6/98 (6%)

Query: 209 AIL-EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           A+L ++Y++  ++ N +    +F   +GK L      +++  +    G+ +  + H LRH
Sbjct: 268 AVLSDWYEVSHYNSNNDF---VFNN-QGKTLQVMRPNKWLHDVSNKYGVAVGLSMHKLRH 323

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
           ++AT  L  G  ++ +Q+ LGH  +S T  +Y+++  +
Sbjct: 324 TWATLALDQGASVKQVQTYLGHADVSMTLDVYSDITKR 361


>gi|268611842|ref|ZP_06145569.1| integrase family protein [Ruminococcus flavefaciens FD-1]
          Length = 404

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 19/117 (16%)

Query: 187 TLRIQG--KGDKIRIVPL------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           TL +Q   K  K R++PL      +   ++++    D C F +N   Q+P          
Sbjct: 277 TLTVQDTTKSGKPRVIPLNQKAIQILETQRSLFGGDDDC-FIVNGTKQIP---------- 325

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           +  V      ++ R   +P  +  HTLRH+FA+  +  G D++ +  ILGH  ++ T
Sbjct: 326 DKTVVANSYSKIARAAKIPDPSGIHTLRHTFASSAIRKGVDIKVVSEILGHASVTFT 382


>gi|251780787|ref|ZP_04823707.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243085102|gb|EES50992.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 384

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           GK + P      +R L +   +      H LRH+ AT LL +G D++++Q  LGH  ++T
Sbjct: 298 GKYMCPTDITDRLRALLKRNEINKKIRWHDLRHTSATLLLESGVDMKTVQERLGHASMNT 357

Query: 295 T-QIYTNVNSK 304
           T  IY++V  K
Sbjct: 358 TSNIYSHVTEK 368


>gi|229521961|ref|ZP_04411378.1| site-specific recombinase XerC [Vibrio cholerae TM 11079-80]
 gi|229340886|gb|EEO05891.1| site-specific recombinase XerC [Vibrio cholerae TM 11079-80]
          Length = 233

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL---SNGGDLRSIQ 284
           PLF     + ++   FQ       R   +P   T H LRH++A   L   ++   LR +Q
Sbjct: 141 PLFLSRNRQAMSRRSFQARFSTWCRLANVP-DGTPHWLRHTWAIRFLGRTTSPDALRRVQ 199

Query: 285 SILGHFRLSTTQIYT 299
           ++LGH  LSTT IYT
Sbjct: 200 AVLGHSNLSTTAIYT 214


>gi|111017694|ref|YP_700666.1| tyrosine recombinase [Rhodococcus jostii RHA1]
 gi|111023863|ref|YP_706835.1| integrase/recombinase [Rhodococcus jostii RHA1]
 gi|110817224|gb|ABG92508.1| tyrosine recombinase [Rhodococcus jostii RHA1]
 gi|110823393|gb|ABG98677.1| possible integrase/recombinase [Rhodococcus jostii RHA1]
          Length = 353

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 21/161 (13%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQ-GKGDKI-----RIVPLLP 204
           AR+ A+   LY  GLR  EA  L   ++   +     L ++ GKG +      R VP+L 
Sbjct: 170 ARDYALFRTLYHAGLRSDEASKLEIADVYFGRGPFGKLHVRFGKGARTSGPRPRWVPMLD 229

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLR--RYLGLPL 258
            +   +  Y +      ++  +LP    LF    G  +  G  +  +R L+   +     
Sbjct: 230 HLDLVVRWYLE------DVRPKLPESAVLFCDQSGGAMARGTIRNRLRYLQDLEHCSPAD 283

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
             + H LR + ATH    G DL +IQ +LGH+ + +T  Y 
Sbjct: 284 RFSPHALRRACATHNYERGVDLVAIQQMLGHWTVGSTMRYV 324


>gi|298387400|ref|ZP_06996953.1| integrase [Bacteroides sp. 1_1_14]
 gi|298260069|gb|EFI02940.1| integrase [Bacteroides sp. 1_1_14]
          Length = 318

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 9/72 (12%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY---- 298
           F  +++ L R L L    T++T+RHS+AT     G  +  I   LGH  + TTQIY    
Sbjct: 235 FNNHLKSLARALHLTSPVTSYTIRHSWATTAKFRGVPIEMISESLGHKSIKTTQIYLKGF 294

Query: 299 -----TNVNSKN 305
                T VN KN
Sbjct: 295 ELKERTEVNRKN 306


>gi|265753984|ref|ZP_06089339.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|333029234|ref|ZP_08457295.1| integrase family protein [Bacteroides coprosuis DSM 18011]
 gi|263235698|gb|EEZ21222.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|332739831|gb|EGJ70313.1| integrase family protein [Bacteroides coprosuis DSM 18011]
          Length = 416

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 66/306 (21%), Positives = 131/306 (42%), Gaps = 31/306 (10%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
           G+ +    SF +  ER  +LQN        K   +  EC+TR  +  +  + +E      
Sbjct: 109 GSGMAVSKSFVIWAER--YLQN--------KHFGKHQECNTRCLIDKVTRFEDEHKHPMN 158

Query: 63  IRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           I  ++  ++R F     +   I   ++  +++ +++   +++K+ +T           K 
Sbjct: 159 IDSMTADDLRVFADFLSSDYDISMNTIVTNMTLMRTVCNWVRKQGVTNNDPFFGYDMPKA 218

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
               P  L  ++   ++D  L   + + +  + R+  +   + GC  R S+ ++ TP+NI
Sbjct: 219 LYGTPYFLTIQERDQVLDADL---TDDAELAEYRDMFVFQCMVGC--RHSDLVTFTPKNI 273

Query: 182 MD---DQSTLRIQGK-GDKIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFR 231
           +D   +   ++ +GK GD +R VPL+P    AIL+ +D      + P   N      + R
Sbjct: 274 IDGVLEYIPIKTKGKLGDVVR-VPLIPKA-MAILDGHDHGDDEPIFPKHYNFKFNDAIRR 331

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
            ++   +N  V      + R     P+S   T+H  R +F  +L     D   + S+ GH
Sbjct: 332 ILKRAKVN-RVVTVINPKTRLEEKKPISDVATSHLARRTFIGNLYRMVKDPDLVASMSGH 390

Query: 290 FRLSTT 295
            + S  
Sbjct: 391 AKGSVA 396


>gi|229551629|ref|ZP_04440354.1| bacteriophage integrase [Lactobacillus rhamnosus LMS2-1]
 gi|229314947|gb|EEN80920.1| bacteriophage integrase [Lactobacillus rhamnosus LMS2-1]
          Length = 376

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 35/68 (51%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LFR IR   L+     + +R + + L +  + T H LRH+  ++L++N  D+  I   LG
Sbjct: 284 LFRSIRHNMLSSTAINKDLRTIEKTLDISPAITFHGLRHTHVSYLIANHVDINYISKRLG 343

Query: 289 HFRLSTTQ 296
           H     TQ
Sbjct: 344 HANTMITQ 351


>gi|296163717|ref|ZP_06846431.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886038|gb|EFG65942.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 316

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 14/153 (9%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           L+   G+RISEAL L   +++ +   L + Q K  + R+VPL  +   A+  Y  L    
Sbjct: 141 LIAATGMRISEALRLERVDVLLEHGVLIVRQSKYRRSRLVPLHATTTAALQRYAQLRDQF 200

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-----STTAHTLRHSFAT---- 271
           L L      F    G+ L     +     LRR LG        +   H LRH+F T    
Sbjct: 201 LPLATDNNFFLSPWGRALKIWNAEETFCILRRQLGWIARGDYPAPRIHDLRHTFITNCLV 260

Query: 272 ----HLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               H ++    + S+ + +GH R++ T  Y +
Sbjct: 261 RWYQHQINVDNAIASLSTYVGHVRVTDTYWYVS 293


>gi|295105004|emb|CBL02548.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 384

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 71/167 (42%), Gaps = 26/167 (15%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------------GDKIRIVPLL 203
           + +L G GLR+SE   LT  +I  ++  + ++ +                   IR VP+ 
Sbjct: 201 IVILIGTGLRVSELYGLTRADIDFERHCIHVRRQLCRTAEKPYFVTPPKTKSGIRNVPMT 260

Query: 204 PSV----RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR----QLRRYLG 255
            +V    R+ +          L       LF    G P      + Y+R    +  +  G
Sbjct: 261 DTVCAALRRVVKARASTKVEALVDGCSGFLFLDKSGMPKVAMHLENYMRGVQGKFEKAYG 320

Query: 256 LPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTN 300
            P+   T H LRH+F T++   G D++S+Q ++GH   S T  +YT+
Sbjct: 321 KPVPRVTPHVLRHTFCTNVQQAGLDVKSLQYLMGHSNASVTLDVYTH 367


>gi|71276420|ref|ZP_00652696.1| Phage integrase [Xylella fastidiosa Dixon]
 gi|71162736|gb|EAO12462.1| Phage integrase [Xylella fastidiosa Dixon]
          Length = 397

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 8/116 (6%)

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG------IRGKPLNPGVFQRYIRQLR 251
           ++V L P+ R+   ++    P    LN  +   +         GKP+     +   R+LR
Sbjct: 218 KLVQLNPAGRQQTKKFRPTVPLLPALNAYIATVKPESYLVHWHGKPIK--SIKTTWRKLR 275

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +  GLPL     T+RH+ AT L   G     +  +LGH    TT  Y   +    G
Sbjct: 276 KRAGLPLWFVPKTIRHTLATWLRQRGVPAWDVSGLLGHHAGGTTDAYAKFDPSYMG 331


>gi|303235421|ref|ZP_07322036.1| conserved hypothetical protein [Prevotella disiens FB035-09AN]
 gi|303237463|ref|ZP_07324028.1| conserved hypothetical protein [Prevotella disiens FB035-09AN]
 gi|302482283|gb|EFL45313.1| conserved hypothetical protein [Prevotella disiens FB035-09AN]
 gi|302484369|gb|EFL47349.1| conserved hypothetical protein [Prevotella disiens FB035-09AN]
          Length = 102

 Score = 41.2 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 28/50 (56%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           G+    + H  RH+F T  LS G  + SI  ++GH  +S+TQ+Y  V  K
Sbjct: 13  GIRQRLSFHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDK 62


>gi|294664917|ref|ZP_06730233.1| cointegrate resolution protein S [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292605317|gb|EFF48652.1| cointegrate resolution protein S [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 424

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 228 PLFR------GIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGD 279
           PLFR      GI   PL+P    R +R++ R  GL  P + + H+LR  FA    +NG D
Sbjct: 216 PLFRAVDQWGGIAAAPLHPNSLVRLLRRIFREAGLSSPNAYSGHSLRRGFAGWANANGWD 275

Query: 280 LRSIQSILG 288
           ++++   +G
Sbjct: 276 VKALMEYVG 284


>gi|282164442|ref|YP_003356827.1| putative site-specific recombinase [Methanocella paludicola SANAE]
 gi|282156756|dbj|BAI61844.1| putative site-specific recombinase [Methanocella paludicola SANAE]
          Length = 289

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 14/157 (8%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-----------KIRIVPLL 203
           R++AILYLL  C +R  E ++   +++   +    ++ K D           + R +P+ 
Sbjct: 120 RDNAILYLLVYCAIRPKELINADVEDVDLIERKFYVRAKYDVDIESPGIKSHREREIPIS 179

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
               KAI  Y D      N   +   F  + G  +     Q  +R   +  G+   T  +
Sbjct: 180 RECAKAIRTYLD--EGRPNYPTKALFFTNL-GNRIAIRTLQDIVRDAAKRAGIKRRTYPY 236

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             RHS  T ++ +  +L  I  I+GH  L  T+ Y++
Sbjct: 237 LCRHSGCTLMVESNINLLYISKIMGHSTLEQTRAYSH 273


>gi|237710667|ref|ZP_04541148.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|229455389|gb|EEO61110.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
          Length = 272

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            ++HT R SFAT+L   G DL SI  ++GH  +  TQ Y     +     +ME +
Sbjct: 217 VSSHTARRSFATNLYLRGADLYSISQMMGHASVEMTQNYLCCGLREQSTQVMEYF 271


>gi|57867512|ref|YP_189166.1| phage integrase family site specific recombinase [Staphylococcus
           epidermidis RP62A]
 gi|57638170|gb|AAW54958.1| site-specific recombinase, phage integrase family [Staphylococcus
           epidermidis RP62A]
          Length = 347

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 127/296 (42%), Gaps = 47/296 (15%)

Query: 22  LQNLEIERGL-SKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEIRAFISKR 78
           ++N   E G+ S+ T  +Y  D  QF  +     E    +  I   + +  + R+++ + 
Sbjct: 24  IENYSNEVGINSERTKIAYRDDVAQFFKYFNCNNESTTDVVYIIFTRNNIVKYRSYLLEE 83

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTL 137
           +  K+   ++ R +  +K F+KYL       + NI+N +  LK +N+   AL+ ++A  L
Sbjct: 84  K--KLSASTINRKMCALKEFIKYLSSYGYDIDINIINQLSKLKTTNNSYEALSLEEAYAL 141

Query: 138 VDNVLLHTSHETKWI-DARNSAILYLLYGC------GLRISEALS-LTPQN--IMDDQST 187
           ++           WI D  N   L   Y C      G+R +EAL+ LT  +  I +D+  
Sbjct: 142 IN-----------WIKDNENRKALDKYYYCLLALDTGVR-AEALNKLTKASFIIKEDEVI 189

Query: 188 LRIQGKGDKIRIVPLLPSVRKAIL-EYYDLCPFDLNLNIQLPLFRGI---RGKPLNPGVF 243
           ++   KG K        +  K I  E+YD    DL  + QL L   I    GK       
Sbjct: 190 VKGVDKGKK--------AYTKVISREFYDNMHNDLKFD-QLNLTDNIFNFSGKNRTD--- 237

Query: 244 QRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              + + ++ LG    + T H+ +    T+      D+R   ++  H  + TTQ Y
Sbjct: 238 --MLNRAKKSLGWENRNITFHSFKKGAVTYAYECTKDIRVAMNVGSHSNMETTQRY 291


>gi|323159040|gb|EFZ45041.1| resolvase [Escherichia coli E128010]
          Length = 246

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 40/173 (23%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRI----------QGKGDKIRIV 200
           D R+  +   L+  G+RI EA  LTP++   D  +  +RI          +   D++R+V
Sbjct: 59  DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLV 118

Query: 201 PL--LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL---NPGVFQRYIRQLRR--- 252
           PL  +  VR+  +E + +              R  R +PL        + +++Q  R   
Sbjct: 119 PLTDISYVRQ--MESWMIT------------TRPRRREPLWAVTDETMRNWLKQAVRRAE 164

Query: 253 ----YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               +  +P+  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 165 ADGVHFSIPV--TPHTFRHSYIMHMLYHRQPRKVIQALAGHKDPRSMEVYTRV 215


>gi|306829526|ref|ZP_07462716.1| phage integrase family integrase/recombinase [Streptococcus mitis
           ATCC 6249]
 gi|304428612|gb|EFM31702.1| phage integrase family integrase/recombinase [Streptococcus mitis
           ATCC 6249]
          Length = 360

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 99/255 (38%), Gaps = 43/255 (16%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--------PRALNEK 132
           Q +   ++ R+LS + S  KYL +     +      RN+ K  S          RA N K
Sbjct: 103 QGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIK 162

Query: 133 QALTLVDNVLLHTSHETKWID-------------------ARNSAILYLLYGCGLRISEA 173
           Q L L D     T     +ID                    R+ AI+ LL   G+R+SEA
Sbjct: 163 QKLFLGD----ETEGFLTYIDQEYPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEA 218

Query: 174 LSLTPQNI---MDDQSTLRIQGKGDKIRIV----PLLPSVRKAILEYYDLCPFDLNLNIQ 226
           ++L  +++   M      R  GK D + +     P L +      + Y     D  L   
Sbjct: 219 VNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKTDTALF-- 276

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           L L+RG+  + ++    ++ + +        +  T H LRH+ AT L         +   
Sbjct: 277 LTLYRGVPNR-IDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQ 333

Query: 287 LGHFRLSTTQIYTNV 301
           LGH     T +YT++
Sbjct: 334 LGHASTQVTDLYTHI 348


>gi|281426314|ref|ZP_06257227.1| putative integrase [Prevotella oris F0302]
 gi|281399556|gb|EFB30387.1| putative integrase [Prevotella oris F0302]
          Length = 422

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 26/164 (15%)

Query: 167 GLRISEALSLTPQNIM---DDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY--DLCPFD 220
           GL   +   L P++I+   D    +RI+  K D   I+PLLP +   IL  Y  D    +
Sbjct: 257 GLARVDMQRLKPKHIIRNADGTEEIRIKRQKTDVEAIIPLLP-IAGQILSIYIKDKKADE 315

Query: 221 L---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSN 276
           L   NL ++   F  +     N G   R  + L          T H  RH+F+T + LSN
Sbjct: 316 LIFPNLTVRKASFACV-----NIGQICRIEKGL----------TFHMARHTFSTTICLSN 360

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           G  + ++  +LGH  + TTQIY  +      + M  +  + H +
Sbjct: 361 GISMETLSKMLGHSNIGTTQIYGKITDHKIQEDMTALTHREHSA 404


>gi|228933187|ref|ZP_04096043.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228826348|gb|EEM72125.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
          Length = 319

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 124/298 (41%), Gaps = 31/298 (10%)

Query: 16  KERQNWLQNLEIER---GLSKLTLQSYECDTR--QFLIFLAFYTEEKI--TIQTIRQLSY 68
           +E +N +++  IE+   G +  TLQ Y  D R   FLI   F  E  I  T + IR LS 
Sbjct: 16  QENKNLVKDFLIEKKAQGKAASTLQQYNWDLRIILFLIHEHFENENLIDLTRKDIRNLSI 75

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILN-MRNLKKSNSLP 126
                 +S  R   +        +S ++S L++         E N+ + +R L K+    
Sbjct: 76  IFQEMGMSNARVNGL--------MSALRSALEFCADDDDYNYEFNVGSRVRGLPKNPVRE 127

Query: 127 -RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
              + E Q   L+D +L     + K++ A     L L Y    R +E   +    + +  
Sbjct: 128 ITFITEDQINWLIDELL----EQEKYMLA---TYLSLSYYSAARKNEVYQVQKAELTERY 180

Query: 186 STLRIQGK-GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
            T  ++GK G K R+    P V+K I  Y D    D   ++ + +++    + LN  VF 
Sbjct: 181 YTNVVRGKRGKKFRLY-YNPRVQKCIRLYIDQRGKDTIPDLFVRVYKNGERRTLNKSVFN 239

Query: 245 RYIRQLRRYL----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            +     + L    G       H  RHS   +L   G  L  ++S+  H  +STTQ Y
Sbjct: 240 YWCGIFAKMLYEKEGKEYKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSY 297


>gi|71900499|ref|ZP_00682629.1| Phage integrase [Xylella fastidiosa Ann-1]
 gi|71729739|gb|EAO31840.1| Phage integrase [Xylella fastidiosa Ann-1]
          Length = 397

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 8/116 (6%)

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG------IRGKPLNPGVFQRYIRQLR 251
           ++V L P+ R+   ++    P    LN  +   +         GKP+     +   R+LR
Sbjct: 218 KLVQLNPAGRQQTKKFRPTVPLLPALNAYIATVKPESYLVHWHGKPIK--SIKTTWRKLR 275

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +  GLPL     T+RH+ AT L   G     +  +LGH    TT  Y   +    G
Sbjct: 276 KRAGLPLWFVPKTIRHTLATWLRQRGVPAWDVSGLLGHHAGGTTDAYAKFDPSYMG 331


>gi|317481432|ref|ZP_07940499.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902417|gb|EFV24304.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 387

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 28/50 (56%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           G+    T H  RH+ AT LL+ G DL ++  ILGH  +  T++Y  +  K
Sbjct: 324 GIQKHITYHCSRHTAATLLLTLGADLYTVSKILGHRSIRMTEVYAKIVDK 373


>gi|332654094|ref|ZP_08419838.1| putative prophage LambdaCh01, site-specific recombinase, phage
           integrase family [Ruminococcaceae bacterium D16]
 gi|332517180|gb|EGJ46785.1| putative prophage LambdaCh01, site-specific recombinase, phage
           integrase family [Ruminococcaceae bacterium D16]
          Length = 377

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           +P +P        +  R   LP   T H LRH+FAT     G  L  I   LGH   STT
Sbjct: 295 RPYSPNALSLAFTRFVRRNNLP-RLTFHGLRHTFATIASCQGASLFDIGKALGHSTPSTT 353

Query: 296 -QIYTNVNSKNGGDWMMEIYD 315
            +IYT++  +   D M+ + D
Sbjct: 354 GRIYTHLVDRTHEDLMLRVSD 374


>gi|332653263|ref|ZP_08419008.1| phage integrase [Ruminococcaceae bacterium D16]
 gi|332518409|gb|EGJ48012.1| phage integrase [Ruminococcaceae bacterium D16]
          Length = 527

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           H LRH+FAT  L NG D++++ +I+GH    TT   YT++
Sbjct: 323 HDLRHTFATMSLENGMDIKTLSTIIGHVSAETTLNTYTHI 362


>gi|237720976|ref|ZP_04551457.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229449811|gb|EEO55602.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 272

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            ++HT R SFAT+L   G DL SI  ++GH  +  TQ Y     +     +ME +
Sbjct: 217 VSSHTARRSFATNLYLRGADLYSISQMMGHASVEMTQNYLCCGLREQSAQVMEYF 271


>gi|195661224|ref|YP_002117692.1| integrase [Lactobacillus phage Lrm1]
 gi|166200938|gb|ABY84325.1| integrase [Lactobacillus phage Lrm1]
          Length = 375

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 35/68 (51%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LFR IR   L+     + +R + + L +  + T H LRH+  ++L++N  D+  I   LG
Sbjct: 283 LFRSIRHNMLSSTAINKDLRTIEKTLDISPAITFHGLRHTHVSYLIANHVDINYISKRLG 342

Query: 289 HFRLSTTQ 296
           H     TQ
Sbjct: 343 HANTMITQ 350


>gi|189467021|ref|ZP_03015806.1| hypothetical protein BACINT_03403 [Bacteroides intestinalis DSM
           17393]
 gi|189435285|gb|EDV04270.1| hypothetical protein BACINT_03403 [Bacteroides intestinalis DSM
           17393]
          Length = 410

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 12/103 (11%)

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           L  V K I+E YD    D  L + +P +   +            I+ + +  G+  + T 
Sbjct: 295 LLDVAKHIIEKYDGMTDDNKL-LPVPCYVNCKNS----------IKVIAKKCGIEKNVTW 343

Query: 263 HTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           H  RH++AT + LSN   + ++  +LGH  + TTQIY  + ++
Sbjct: 344 HMSRHTYATTVCLSNDVPIETLSKMLGHRSIRTTQIYAKITAE 386


>gi|168703458|ref|ZP_02735735.1| Phage integrase [Gemmata obscuriglobus UQM 2246]
          Length = 363

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 125/316 (39%), Gaps = 44/316 (13%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY-TEEKITIQTIRQLSYTEIRAFISK 77
           + WL++LE         L+    D R+    L F  T   I +  +  L  TE      K
Sbjct: 75  ERWLKSLE------GTELRQRTKDVRKTATDLYFVPTLGHIRLTDLTHLQITEA----VK 124

Query: 78  RRTQKIGDRSLKRS-LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           + T  +   S +R+ L+ + + L   K   + T++ IL ++   +    P+A+ +   + 
Sbjct: 125 KWTATLKSASTRRTYLAALSTALNAAKYEGLITDNPILKVKRPPQ----PKAVFDPFTVA 180

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN---------IMDDQST 187
            ++ ++           A     LY   GC  R+ EAL+L   +         I   Q  
Sbjct: 181 DLNRIIADAVQR----PATYPCALYAATGC--RMGEALALDVTSFDPAAGTIAITQTQDA 234

Query: 188 LRIQGKG---DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG-VF 243
            R +G     + IR++ +    R A++         +      PLF    G+  +   V 
Sbjct: 235 RRERGPAKTSNSIRVIEVPADARPALVSA-------IGTRTDGPLFTTPAGRRQSKSNVR 287

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           + +IR L R LGL      H  RH+ AT +L+ G  +  + + LG    +  +IY   + 
Sbjct: 288 KAWIRLLNR-LGLKYRAP-HKCRHTVATRMLAAGYGIPDVAAYLGDTAETVLRIYARPSG 345

Query: 304 KNGGDWMMEIYDQTHP 319
            + G  M  + D   P
Sbjct: 346 ASVGAGMQALLDAAKP 361


>gi|325853963|ref|ZP_08171479.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325484300|gb|EGC87230.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 414

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 261 TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           T H  RH+ AT + LSNG  + S+ S+LGH  +S+TQIY  + ++
Sbjct: 344 TWHMARHTMATVVCLSNGMPIESVSSVLGHKCISSTQIYAKITNE 388


>gi|325288214|ref|YP_004264395.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324963615|gb|ADY54394.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 403

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 68/176 (38%), Gaps = 53/176 (30%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGK-------------GDKI-------RIVPLLPSV 206
           GLR SE L L    I  +Q T+ I+ K             G+ +       R +PLLPSV
Sbjct: 223 GLRRSEVLGLKWDAINLEQKTISIKHKVIEDTVDGKSIAVGEDVLKTKSSFRTLPLLPSV 282

Query: 207 RKAIL-------------------EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
            K +L                   +Y D    D              GK + P     + 
Sbjct: 283 EKLLLAEKEKQEMYRKLFKRSYCRDYLDYICLDQT------------GKLMRPNYVTDHF 330

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN 302
             +     L      H LRHS A+ LL+NG  ++ IQ  LGH   STT  IY++++
Sbjct: 331 SWVLEKADLK-KIRFHDLRHSCASLLLANGISMKQIQIWLGHSTFSTTADIYSHLD 385


>gi|288927810|ref|ZP_06421657.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330644|gb|EFC69228.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 414

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 261 TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           T H  RH+ AT + LSNG  + S+ S+LGH  +S+TQIY  + ++
Sbjct: 344 TWHMARHTMATVVCLSNGMPIESVSSVLGHKCISSTQIYAKITNE 388


>gi|111025083|ref|YP_707503.1| integrase/recombinase [Rhodococcus jostii RHA1]
 gi|110824062|gb|ABG99345.1| possible integrase/recombinase [Rhodococcus jostii RHA1]
          Length = 176

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 21/152 (13%)

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLR---------IQGKGDKIRIVPLLPSVRKAILEY 213
           LY  GLR  E + L   ++   + T            +G G + R VP+L  +   +  Y
Sbjct: 5   LYHAGLRSEEVVMLDRGDVHFGRGTFGKLHVRFGKGAKGSGPRPRWVPMLDGLDLVLRWY 64

Query: 214 YDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST--TAHTLRH 267
            D      ++  + P    L     G  +     +  +R L    G P +   + H +R 
Sbjct: 65  LD------DVRGRFPDSAALLCDESGGRMAAATIRNRLRHLMSVEGRPEAEWFSPHAMRR 118

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           + ATH    G DL +IQ +LGH+ +++T  Y 
Sbjct: 119 ACATHNYERGVDLVAIQQLLGHWTVASTMRYV 150


>gi|314938444|ref|ZP_07845733.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
 gi|314942723|ref|ZP_07849548.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|314952531|ref|ZP_07855530.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|314994043|ref|ZP_07859368.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|314997944|ref|ZP_07862841.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313588052|gb|EFR66897.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313591527|gb|EFR70372.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|313595365|gb|EFR74210.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|313598534|gb|EFR77379.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|313642211|gb|EFS06791.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
          Length = 443

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 90/204 (44%), Gaps = 31/204 (15%)

Query: 124 SLPRALNEKQALTLVD-NVLLHTSHE-TKWIDA-RNSA-----ILYLLYGCGLRISEALS 175
           S+PR     +AL + D N+  +T  E  ++++A RN          LL   G+R  EA +
Sbjct: 212 SIPRG----EALDIEDKNIEFYTKEELIEFLEAIRNDDDERYLFFSLLAFTGIRKGEAFA 267

Query: 176 LTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSV----RKAILE---------YYDLCPF 219
           LT  +I     TL I     +G + R++   P      RK  L+         YY     
Sbjct: 268 LTWSDIDFKSKTLNINKTVTRGYQGRLIVNTPKSKSGKRKIYLDNDLISLLRKYYTKNKT 327

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLSTTAHTLRHSFATHLLSNGG 278
            + +  +  +F    G   NP V + ++  + + +  L    T H  RH+ A+ L  +G 
Sbjct: 328 IVTIQSENLIFHH-DGLLYNPTVSRSWLNVIYKHHPELTKRITTHGFRHTHASLLFESGA 386

Query: 279 DLRSIQSILGHFRLSTTQ-IYTNV 301
            L+ +Q  LGH  + TT  IYT+V
Sbjct: 387 SLKDVQERLGHADIQTTSNIYTHV 410


>gi|291542827|emb|CBL15937.1| Site-specific recombinase XerD [Ruminococcus bromii L2-63]
          Length = 397

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVN 302
           H LRHS A+ L +NG  L+ IQ  LGH  +STT  IYT++N
Sbjct: 339 HDLRHSCASLLYANGVSLKEIQEWLGHSDISTTSNIYTHLN 379


>gi|269941595|emb|CBI50000.1| phage integrase [Staphylococcus aureus subsp. aureus TW20]
          Length = 347

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 127/299 (42%), Gaps = 53/299 (17%)

Query: 22  LQNLEIERGL-SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++N   E G+ S+ T  +Y  D  QF  +     E   +   +  + +T  R  I K R+
Sbjct: 24  IENYSNEVGINSERTKIAYRDDVAQFFKYFNCNNE---SAADVVYMIFT--RNNIVKYRS 78

Query: 81  -----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQA 134
                +K+   ++ R +  +K F+KYL       + NI+N +  LK +N+   AL+ ++A
Sbjct: 79  YLLEEKKLSASTINRKMCALKEFIKYLSSYGYNIDINIINQLSKLKTTNNSYEALSLEEA 138

Query: 135 LTLVDNVLLHTSHETKWI-DARNSAILYLLYGC------GLRISEALS-LTPQN--IMDD 184
             L++           WI D  N   L   Y C      G+R +EAL+ LT  +  I +D
Sbjct: 139 YALIN-----------WIKDNENRKALDKYYYCLLALDTGVR-AEALNKLTKASFVIKED 186

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAIL-EYYDLCPFDLNLNIQLPLFRGI---RGKPLNP 240
           +  ++   KG K        +  K I  E+YD    DL  + QL L   I    GK    
Sbjct: 187 EVIVKGVDKGKK--------AYTKVISREFYDNMHNDLKFD-QLNLTDNIFNFSGKNRTD 237

Query: 241 GVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                 + + ++ LG    + T H+ +    T+      D+R   ++  H  + TTQ Y
Sbjct: 238 -----MLNRAKKSLGWENRNITFHSFKKGAVTYAYECTKDIRVAMNVGSHSNMETTQRY 291


>gi|22096307|gb|AAM92160.1| TnpB-like protein [Staphylococcus aureus]
          Length = 632

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 53/273 (19%), Positives = 104/273 (38%), Gaps = 37/273 (13%)

Query: 49  FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK---R 105
           F  F  +    +  + QL+  +I  ++++     I   +L   +S +  F   ++K    
Sbjct: 248 FFVFLNKNYKHLTRLHQLTREQIEHYLAELNKSGIKPSTLMGKISVLDGFFTTIQKFDWN 307

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
            + ++  +      K   + PR ++E         VL   +     + A  + ++ ++  
Sbjct: 308 DVPSKILVFQEDYPKVPKATPRYIDE--------YVLEQLNSHLDDLPAYIATMVMIIQE 359

Query: 166 CGLRISEALSLTPQNIMDDQSTLRI----QGKGDKIRIVP-------LLPSVRKAILEYY 214
            G+RISE  +L    +++D+         Q K  K   +P       L+ +  K + E +
Sbjct: 360 GGMRISELCTLKRDCLLEDKEGDYFLKYYQWKMKKEHTIPISREVAGLIKAHEKHVSEEF 419

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY------LGLPLSTTAHTLRHS 268
             C +         LF    G PL    F+R + ++          G      AH  RH+
Sbjct: 420 GGCEY---------LFPRKDGSPLKQDTFRRELNEVAHKKNIVDRAGSVFRFHAHAFRHT 470

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             T +++NG     +Q  LGH     T  Y ++
Sbjct: 471 VGTRMINNGIPQHIVQKFLGHESPEMTSRYAHI 503


>gi|13488151|ref|NP_085858.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14028107|dbj|BAB54699.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 323

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 96/234 (41%), Gaps = 22/234 (9%)

Query: 91  SLSG----IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           SLSG    I+ F  + ++R  T          +K+S   P   + ++ L ++     H  
Sbjct: 72  SLSGEFGIIRQFCLHRRRRDPTCYVPEHAFAPVKESPFFPYIFSREEVLRILAAASAHEG 131

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL---L 203
           H   W       +L +LY  G+R+ EA  L  +++  ++ TL I+    + RIVP+   L
Sbjct: 132 HFI-WASMLRRLVL-MLYCTGIRLGEATRLKMEDVDLERGTLLIRNSKRRTRIVPIREDL 189

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-----L 258
               +  L        DL+       F   +G PL+       IR++ R L +      +
Sbjct: 190 IGELRLYLHDRRRLLLDLHRPDHGAFFIRQKGGPLDISGASVAIREILRRLDIKPARGRV 249

Query: 259 STTAHTLRHSFATHLLS----NGGDLRS----IQSILGHFRLSTTQIYTNVNSK 304
               +  RH+FA H L+     G D+      + + LGH  +  T++Y     +
Sbjct: 250 GARPYEFRHAFAVHRLTAWAEEGADIHVKLPFLSAYLGHQNILGTEVYLKATPQ 303


>gi|228472546|ref|ZP_04057306.1| integrase [Capnocytophaga gingivalis ATCC 33624]
 gi|228275959|gb|EEK14715.1| integrase [Capnocytophaga gingivalis ATCC 33624]
          Length = 267

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 14/144 (9%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSVRKAILEYYD 215
           +++ L   G R+SE + +  +++   Q  L I  KG K+R   I  LL       L+   
Sbjct: 116 LVWFLTATGARVSELIQIKAEHLT--QGYLDIYSKGGKVRRLYIPKLLREESSLWLKEKG 173

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           +    + LN          GK + P G+ Q+      +Y   P     H+ RH FA + L
Sbjct: 174 ITSGYIFLNR--------FGKRITPRGIAQQLKVFAYKYQLNPKVVYPHSFRHRFAKNFL 225

Query: 275 SNGGDLRSIQSILGHFRLSTTQIY 298
               DL  +  ++GH  + TT+IY
Sbjct: 226 ERFNDLTLLADLMGHESIETTRIY 249


>gi|332160511|ref|YP_004297088.1| Integrase [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|325664741|gb|ADZ41385.1| Integrase [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|330863444|emb|CBX73563.1| hypothetical protein YEW_LI48250 [Yersinia enterocolitica W22703]
          Length = 625

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 62/140 (44%), Gaps = 32/140 (22%)

Query: 177 TPQNIMDDQSTLRIQGKGDK-------IRIVPLLPSVRK-AILEYYD---------LCPF 219
            P  +MD+++    Q  GDK       IR VPL P + +  +LEY D         L P 
Sbjct: 477 APDKMMDEEA----QAGGDKSLKTVNAIRQVPLHPRLLELGLLEYVDALKSVGYDRLFP- 531

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNG 277
           +L  N ++  +R    K  N   F +        LG P     T H+LRH+F   +    
Sbjct: 532 ELKHN-KIKGYRAAASKWFNENYFGKV-------LGFPRDGKKTFHSLRHTFINAIDEFE 583

Query: 278 GDLRSIQSILGHFRLSTTQI 297
            + R+I  ++GH R STT I
Sbjct: 584 NNERTIAQLVGHVRGSTTAI 603


>gi|325848894|ref|ZP_08170404.1| site-specific recombinase, phage integrase family [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480538|gb|EGC83600.1| site-specific recombinase, phage integrase family [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 353

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 29/159 (18%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGK---GDKIRIVPLLPSVRKAI--LEYYDL 216
           L+   GLR  E L+LT  +I     TL +      G+  +IV   P    +I  ++  D 
Sbjct: 185 LMCYTGLRRGEILALTWDDIDFKNKTLTVNKTLSIGEYKKIVLSSPKTESSIRTIDLDDK 244

Query: 217 CPFDLN-LNIQLP---LFRGIRGK---------PLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              +L  L IQ     +F   +GK          LN  + +  I+++R           H
Sbjct: 245 TILELQKLKIQSKYKLIFPNKKGKYSRLSNIADKLNKAIKETNIKKIR----------VH 294

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
            LRH+ A+ L ++G  ++ +Q+ LGH  + TT  IYT+V
Sbjct: 295 DLRHTHASLLFASGASIKYVQTRLGHADVKTTLNIYTHV 333


>gi|326789971|ref|YP_004307792.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326540735|gb|ADZ82594.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 407

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 30/40 (75%), Gaps = 1/40 (2%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           H++RH++AT L  N   ++++QS++GH  ++TT  IYT+V
Sbjct: 350 HSMRHTYATRLFENDVPIKTVQSLMGHNDITTTMNIYTHV 389


>gi|212702760|ref|ZP_03310888.1| hypothetical protein DESPIG_00788 [Desulfovibrio piger ATCC 29098]
 gi|212673817|gb|EEB34300.1| hypothetical protein DESPIG_00788 [Desulfovibrio piger ATCC 29098]
          Length = 394

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 17/150 (11%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKG----DKIRIVPLLPSVRKAILEY 213
           +L   Y  G R  E   L   ++  D  ++R +  KG     + R VP+ P + KA+  +
Sbjct: 199 MLLTYYYTGARRGEVFRLLWSDVNFDSGSIRLVDHKGRDGSSRARWVPMHPELAKALRWW 258

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ---RYIRQLRRYLGL-PLSTTAHTLRHSF 269
             + P  ++         G  G+P     FQ   + + +L R  G+ P     H LRH  
Sbjct: 259 QAVRPCVVDNVFMQEHCDGTLGEP-----FQQRSKLMPRLCRKAGVKPFGF--HALRHKA 311

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           A    + GG L   Q+++GH R +TT IY 
Sbjct: 312 AAITFTAGG-LAVAQTLMGHSRATTTDIYV 340


>gi|194398032|ref|YP_002037770.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           G54]
 gi|254799371|sp|B5E4Q4|XERS_STRP4 RecName: Full=Tyrosine recombinase xerS
 gi|194357699|gb|ACF56147.1| tyrosine recombinase XerC [Streptococcus pneumoniae G54]
          Length = 356

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 99/255 (38%), Gaps = 43/255 (16%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--------PRALNEK 132
           Q +   ++ R+LS + S  KYL +     +      RN+ K  S          RA N K
Sbjct: 99  QGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIK 158

Query: 133 QALTLVDNVLLHTSHETKWID-------------------ARNSAILYLLYGCGLRISEA 173
           Q L L D     T     +ID                    R+ AI+ LL   G+R+SEA
Sbjct: 159 QKLFLGD----ETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEA 214

Query: 174 LSLTPQNI---MDDQSTLRIQGKGDKIRIV----PLLPSVRKAILEYYDLCPFDLNLNIQ 226
           ++L  +++   M      R  GK D + +     P L +      + Y     D  L   
Sbjct: 215 VNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKTDTALF-- 272

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           L L+RG+  + ++    ++ + +        +  T H LRH+ AT L         +   
Sbjct: 273 LTLYRGVPNR-IDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQ 329

Query: 287 LGHFRLSTTQIYTNV 301
           LGH     T +YT++
Sbjct: 330 LGHASTQVTDLYTHI 344


>gi|29346005|ref|NP_809508.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568594|ref|ZP_04846005.1| integrase [Bacteroides sp. 1_1_6]
 gi|29337899|gb|AAO75702.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251842667|gb|EES70747.1| integrase [Bacteroides sp. 1_1_6]
          Length = 318

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 9/72 (12%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY---- 298
           F  +++ L R L L    T++T+RHS+AT     G  +  I   LGH  + TTQIY    
Sbjct: 235 FNNHLKSLARALHLTSPVTSYTIRHSWATTAKFRGVPIEMISESLGHKSIKTTQIYLKGF 294

Query: 299 -----TNVNSKN 305
                T VN KN
Sbjct: 295 ELKERTEVNRKN 306


>gi|332885866|gb|EGK06112.1| hypothetical protein HMPREF9456_02376 [Dysgonomonas mossii DSM
           22836]
          Length = 409

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 20/150 (13%)

Query: 162 LLYGC--GLRISEALSLTPQNI-MDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYD 215
            L+ C  G    + +S+T  N+  DD     ++   GK  ++  + LLP     I +Y D
Sbjct: 253 FLFSCYTGTAYIDTVSVTKDNLSTDDDGAWWLKYKRGKNGQLARIKLLPEAIALIDKYRD 312

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
                 N     P+        ++ G  +R ++ +R    +      H  RHSFA+ + L
Sbjct: 313 D-----NRETLFPM--------IHNGTIKRNMQGIRILADVKGRLHYHMSRHSFASLITL 359

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             G  + ++  +LGH  + TTQIY  V  K
Sbjct: 360 EAGVPIETVSKMLGHSDIKTTQIYARVTPK 389


>gi|324991160|gb|EGC23094.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK353]
          Length = 357

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 103/276 (37%), Gaps = 41/276 (14%)

Query: 68  YTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL- 125
           Y   R  ++   TQ  +   ++ R+LS + S  KYL +     +      RN+ K  +  
Sbjct: 86  YLRERPLLNANTTQNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATK 145

Query: 126 -------PRALNEKQALTLVDNVLLHTSHETKWIDA-------------------RNSAI 159
                   RA N KQ L L D     T    ++ID                    R+ AI
Sbjct: 146 KKKETLAARAENIKQKLFLGD----ETEEFLQYIDTEYPKKLSNRALSSFNKNKERDLAI 201

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP- 218
           + LL   G+R+SEA++L  ++I      + +  KG K   V +    +  + +Y  +   
Sbjct: 202 IALLLASGVRLSEAVNLDLKDINLKMMVIEVTRKGGKRDSVNVAAFAKPYLEDYLSIRSK 261

Query: 219 -FDLNLNIQLPLFRGIRGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
            +              RG P  ++    ++ + +        +  T H LRH+ AT L  
Sbjct: 262 RYKAEKTDTAFFLTEYRGTPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYD 319

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGD 308
                  +   LGH     T +YT++     KN  D
Sbjct: 320 ATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 355


>gi|322389574|ref|ZP_08063123.1| phage integrase family integrase/recombinase [Streptococcus
           parasanguinis ATCC 903]
 gi|321143700|gb|EFX39129.1| phage integrase family integrase/recombinase [Streptococcus
           parasanguinis ATCC 903]
          Length = 356

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 102/263 (38%), Gaps = 46/263 (17%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--------PRALNEKQA 134
           +   ++ R+LS + S  KYL +     +      RN+ K  +          RA N KQ 
Sbjct: 101 VSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATKKKKETLAARAENIKQK 160

Query: 135 LTLVDNVLLHTSHETKWID-------------------ARNSAILYLLYGCGLRISEALS 175
           L L D     T     +ID                    R+ AI+ LL   G+R+SEA++
Sbjct: 161 LFLGD----ETEGFLNYIDQEYPQTLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVN 216

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-------LP 228
           L  +++      + +  KG K   V +  +  K  LE Y L   D     +       L 
Sbjct: 217 LDLRDLNLKMMVIDVTRKGGKRDSVNV-AAFAKPYLEQY-LAIRDKRYKTEKTDTALFLT 274

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           L+RG+  + ++    ++ + +        +  T H LRH+ AT L         +   LG
Sbjct: 275 LYRGVPNR-IDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQLG 331

Query: 289 HFRLSTTQIYTNV---NSKNGGD 308
           H     T +YT++     KN  D
Sbjct: 332 HASTQVTDLYTHIVNDEQKNALD 354


>gi|255692358|ref|ZP_05416033.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|260621985|gb|EEX44856.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 291

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 261 TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T H  RHSFAT + L+ G  + S+  +LGH  + TTQIY  V
Sbjct: 222 TYHLARHSFATEICLTKGVPIESVSKMLGHTNIQTTQIYARV 263


>gi|163753949|ref|ZP_02161072.1| tyrosine type site-specific recombinase [Kordia algicida OT-1]
 gi|161326163|gb|EDP97489.1| tyrosine type site-specific recombinase [Kordia algicida OT-1]
          Length = 404

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 20/142 (14%)

Query: 162 LLYGC--GLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRI-VPLLPSVRKAILEYYD 215
            ++ C  GL  +E   L+ ++I+   D    + +  K    ++ VPLLP+  KAIL  Y 
Sbjct: 250 FVFCCYTGLAYAEMSVLSDKHIIKGFDGNEWIHMYRKKTNAKVSVPLLPTA-KAILTRYK 308

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LL 274
               D++ N  LP+    +        F  Y++++   + +    T H  R +FAT  LL
Sbjct: 309 ----DISENKLLPVISNQK--------FNSYLKEIAAIVDIDKRLTHHIARKTFATTVLL 356

Query: 275 SNGGDLRSIQSILGHFRLSTTQ 296
            N   +  +  +LGH +L  TQ
Sbjct: 357 YNDVPMEIVSELLGHSKLDITQ 378


>gi|301054003|ref|YP_003792214.1| DNA integration/recombination/invertion protein [Bacillus anthracis
           CI]
 gi|300376172|gb|ADK05076.1| DNA integration/recombination/invertion protein [Bacillus cereus
           biovar anthracis str. CI]
          Length = 317

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 123/287 (42%), Gaps = 24/287 (8%)

Query: 31  LSKLTLQSYECDTRQFLIFL--AFYTEEKIT------IQTIRQLSYTEIRAFISKRRTQK 82
           LS  TL+SYE    +F ++L      EE+ +      ++ I+     +   +  K R+  
Sbjct: 19  LSHRTLESYENTLNEFRLWLNGCNGNEEEASSRAVTHVEDIKSQHIKDYMRYCYKERSN- 77

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESN--ILNMRNLKKSNSLPRALNEKQALTLVDN 140
               ++   L+ +K +  YL +  +  E N   L ++N +K  ++   L E+Q   ++ +
Sbjct: 78  -SHTTVAGKLTNLKVYFNYLAQEGLIEERNNPTLRVKNPRKDTNV-ETLTEEQIRLILRH 135

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +      +  +   R+  ++  L G G R+ E + L  ++I D ++   +     K R  
Sbjct: 136 LRRRRRVD-DFYHYRDYTLVVFLLGTGARLGEIMDLRWEDI-DLKAGQVVFPDTGKARTQ 193

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPG----VFQRYIRQLRRYL 254
              P   K I E  D   +  N    LP  LF    G+ ++      VF R  ++L    
Sbjct: 194 QGQPLGAKLISELKDYKQYLENDTYGLPAYLFTTRTGRKMSREAIKLVFVRLAQELNFKS 253

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           G     +AH+LRH + + L+  G     +Q ++ H ++ TT  Y  +
Sbjct: 254 G---RVSAHSLRHFYCSSLIKAGVSPFVVQKLMRHSKIETTMKYVTL 297


>gi|253570329|ref|ZP_04847738.1| site-specific recombinase IntIA [Bacteroides sp. 1_1_6]
 gi|251840710|gb|EES68792.1| site-specific recombinase IntIA [Bacteroides sp. 1_1_6]
          Length = 316

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 12/82 (14%)

Query: 229 LFRGIRG--KPLNPGVFQRYIRQLRRY----------LGLPLSTTAHTLRHSFATHLLSN 276
           LF  +RG   P    +++ Y   LRR+          L L  + T++T+RHS+AT+    
Sbjct: 210 LFSILRGNKSPKGESMYKEYQSALRRFNNQLKSLSRELHLKSAVTSYTIRHSWATNAKYQ 269

Query: 277 GGDLRSIQSILGHFRLSTTQIY 298
           G  +  I   LGH  + TTQIY
Sbjct: 270 GIPIEMISESLGHKSIKTTQIY 291


>gi|256026205|ref|ZP_05440070.1| integrase [Escherichia sp. 4_1_40B]
          Length = 246

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 20/163 (12%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRI----------QGKGDKIRIV 200
           D R+  +   L+  G+RI EA  LTP++   D  +  +RI          +   D++R+V
Sbjct: 59  DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLV 118

Query: 201 PL--LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           PL  +  VR+  +E + +         + PL+  +  + +   + Q   R     +   +
Sbjct: 119 PLTDISYVRQ--MESWMIT---TRPRRRAPLW-AVTDETMRNWLKQAVKRAEADGVHFSI 172

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 173 PVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|147668845|ref|YP_001213663.1| phage integrase family protein [Dehalococcoides sp. BAV1]
 gi|146269793|gb|ABQ16785.1| phage integrase family protein [Dehalococcoides sp. BAV1]
          Length = 231

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 83/206 (40%), Gaps = 48/206 (23%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+  ++ LL+  G R+SEAL +   +I   Q  + IQ    +I++    P     + + +
Sbjct: 21  RDRLLIRLLFHLGCRVSEALGIKVSDIDFKQGLVTIQHLKQRIKLS--CPKCSARLGKGH 78

Query: 215 DLCPFD----LNLNIQLPLFRGIRGKPLNP---GVFQRYIRQ--------------LRRY 253
             CP        +  +    R  R  PL+    G+ + YI++              L R+
Sbjct: 79  KFCPVCGQKVEKVVAEEKEHRKFRNLPLDTVTLGMLKEYIKRGGASSKKGNQQLFNLTRH 138

Query: 254 ------------LGLP----------LSTTAHTLRHSFATHL--LSNGGD-LRSIQSILG 288
                         LP           + + H LR +FA H   L + GD LR +Q  LG
Sbjct: 139 RAWQIVKECAEKAALPDLINPESGKVHNVSPHKLRDAFAVHAVKLDDSGDGLRLLQEHLG 198

Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIY 314
           H  ++TT  Y  V+ +   +W  +++
Sbjct: 199 HQSITTTMKYRKVSGEEQKEWYEKLW 224


>gi|330970082|gb|EGH70148.1| Phage integrase [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 321

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 105/246 (42%), Gaps = 29/246 (11%)

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            + A ++  R       +    ++ I+  +    +  + +   +L +R++K  +      
Sbjct: 71  HVTALVATLRQDDYAPNTTSLYVNAIRGVMNEAWRHDLISHDQLLKIRSIKPVSGTRLIK 130

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
                 TL+  ++   + + +    R++AI+ +LYG G+R SE+++L    I   + +LR
Sbjct: 131 GRNIRRTLIRELMEACAADPRPQGRRDAAIIAILYGSGMRKSESVNLDLSQIDFAERSLR 190

Query: 190 IQGKGDKIRIVPLLPS-VRKAILEYYDL---C--------PFDLNLNIQLPLFRGIRGKP 237
           + GKG+K +++   P    KA+ ++ +L   C        PF  N        R  RG  
Sbjct: 191 VLGKGNK-QLIKYAPEWAFKALNDWLELRRSCLQPGQGDDPFLFN--------RIRRGSH 241

Query: 238 LNPGVFQRY-----IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +      ++      +Q  R +G  ++   H  R SF T ++    DL   Q +  H  +
Sbjct: 242 ITRDRITKHAIYFIAKQRGRQVG--VNIMPHDFRRSFITRVIEE-FDLSIAQKLAHHTHI 298

Query: 293 STTQIY 298
           STT  Y
Sbjct: 299 STTASY 304


>gi|327413033|emb|CAX68059.1| conserved hypothetical protein [Salmonella enterica subsp. VII]
          Length = 302

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 111/281 (39%), Gaps = 51/281 (18%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           + I++ +QL    I  +I  R+ + I  R+L+  ++GI++ L    K K+   ++  + R
Sbjct: 45  VQIRSAQQLKVRHIELYIESRKAEGISKRTLQNEMAGIRTILSLAGKTKM---ADPKHER 101

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
              K+  +  A      L + D          K  D   +A + L    GLR  EA+   
Sbjct: 102 LSNKALGISGASRMGTKLAISDERYREALALIKEKDEGVAATMQLSRYLGLRNEEAVQAV 161

Query: 178 P------QNIMDDQSTLRI-----QGKGDKIRIV---PLLPSVRKAILEYYDLCPFDLNL 223
                  Q I+     +R+      G+    R+V    +L ++ +AIL     C    N 
Sbjct: 162 KSIKTWKQAILRGDERVRVIFGTKGGRARDTRVVDKEKVLSAINEAIL-----CAEKNNG 216

Query: 224 N-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA----THLLSNGG 278
             I +P  +             RYI  +RR  GL    + H+LR+++A     + +S G 
Sbjct: 217 KLIDMPSLQQ---------ALDRYINIMRRVGGLKYENSNHSLRYAYAQDAEKYYISKG- 266

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNG---GDWMMEIYDQ 316
                      F        T+++  +G   GD++  +Y Q
Sbjct: 267 -----------FTQKEASALTSIDLGHGDGRGDYIKRVYSQ 296


>gi|301058487|ref|ZP_07199500.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300447409|gb|EFK11161.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 113

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 29/43 (67%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           H  RH+FA+HL+ NG  ++ +Q +LGH  +  T  Y++++ ++
Sbjct: 35  HDTRHTFASHLIMNGATIKDVQELLGHKDIKMTMRYSHLSQEH 77


>gi|240147142|ref|ZP_04745743.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
 gi|257200666|gb|EEU98950.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
          Length = 413

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 73/190 (38%), Gaps = 46/190 (24%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------------------- 193
           ++    L G G RI EA+ +  ++I  ++ T+ I                          
Sbjct: 206 ASFFKFLLGTGCRIGEAIGIRWEDIDFEKRTISINHSVVYYSREFKEHPICSFAVSLPKT 265

Query: 194 GDKIRIVPLLPSVRKAI-LEYYDLCPFDLNLNI----QLPLFRGIRGKPLNPGVFQRYIR 248
              IR +P++ +V  A+ +E  D      N  +    +  +F    G   NP    R I+
Sbjct: 266 EAGIRTIPMMDTVYDALQMELDDQKEHGFNETVIDGMKGFIFMNRFGNIHNPQAVNRAIK 325

Query: 249 ----------------QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                           Q R  + +P   + H LRH+F +    N  +L+ IQSI+GH  +
Sbjct: 326 RIYEAHNAEEVVKAAKQHREPVIIP-HFSCHHLRHTFCSRFCENETNLKVIQSIMGHANI 384

Query: 293 STT-QIYTNV 301
            TT  IY  V
Sbjct: 385 ETTMDIYAEV 394


>gi|167770452|ref|ZP_02442505.1| hypothetical protein ANACOL_01797 [Anaerotruncus colihominis DSM
           17241]
 gi|167667047|gb|EDS11177.1| hypothetical protein ANACOL_01797 [Anaerotruncus colihominis DSM
           17241]
          Length = 354

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 74/158 (46%), Gaps = 21/158 (13%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK---GDKIRIVPLLPSVRKA 209
           D +++ I+ +L   G+RI+E   +  +N+  D+  + I G+     + RI+P+       
Sbjct: 199 DQQSAQIILVLLYSGMRINELFQMLQKNVYLDEHYM-IGGEKTEAGRNRIIPI------- 250

Query: 210 ILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQ-RYIRQLRRYLGLPLSTTAHTL 265
              +  + P+  N  ++ P   L     G P++   F+ R    L   LG+      H  
Sbjct: 251 ---HDKIYPYIKNW-LETPGKYLISNRSGAPIDLNNFRTRDYYPLLESLGIE-RKNPHCT 305

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN 302
           RH+FA+ +  +G     +Q ILGH   STT +IY + +
Sbjct: 306 RHTFASMMAKSGARPEMLQKILGHANYSTTAEIYVHAD 343


>gi|125973032|ref|YP_001036942.1| phage integrase [Clostridium thermocellum ATCC 27405]
 gi|125713257|gb|ABN51749.1| phage integrase [Clostridium thermocellum ATCC 27405]
          Length = 506

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 13/146 (8%)

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKI----RIVPLLPSV-------RKAILEYYDLC 217
           +I+   ++T  N  D Q  + I+ +G K     R +PL+  +       +K I     LC
Sbjct: 335 KITIQFTVTEVNFGDGQGNVIIEKEGTKSKASKRTLPLVKPIADLLLQKKKDIENNRRLC 394

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
               N      +     G+ + P    ++   L    GL      H LRHS A+ L +NG
Sbjct: 395 GSCYNDKYLDFVHVNEIGERMKPNYISQHFALLLEKHGLK-KIRFHDLRHSCASLLYANG 453

Query: 278 GDLRSIQSILGHFRLSTT-QIYTNVN 302
             L+ IQ  LGH  +STT  IYT+++
Sbjct: 454 VSLKQIQEWLGHSDISTTANIYTHLD 479


>gi|313607236|gb|EFR83689.1| gp43 [Listeria monocytogenes FSL F2-208]
          Length = 314

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 13/150 (8%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-----KIRIVPLLPSVRKAILEY 213
            + L+   G+R +EAL++TP +      T+ I    D            L SVR   +++
Sbjct: 140 FVMLVAKTGMRYAEALAITPADFDWTAQTISINKTWDYKYNKGFAKTKTLSSVRTIKIDW 199

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-YIRQLRRYLGLPLSTTA------HTLR 266
             +  F   L    P    I  +    G ++R +   +  +L      T       H LR
Sbjct: 200 QIVGQFK-PLIKDFPEDEPIFVEKFEDGTYKRQFNSTINNFLAAKCKETGITQISFHALR 258

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           H+ A+ LL+ G  + +I S LGH  +  TQ
Sbjct: 259 HTHASVLLAEGVSIHTISSRLGHADVGVTQ 288


>gi|312866616|ref|ZP_07726831.1| site-specific tyrosine recombinase XerS [Streptococcus
           parasanguinis F0405]
 gi|311097915|gb|EFQ56144.1| site-specific tyrosine recombinase XerS [Streptococcus
           parasanguinis F0405]
          Length = 356

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 102/263 (38%), Gaps = 46/263 (17%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--------PRALNEKQA 134
           +   ++ R+LS + S  KYL +     +      RN+ K  +          RA N KQ 
Sbjct: 101 VSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATKKKKETLAARAENIKQK 160

Query: 135 LTLVDNVLLHTSHETKWID-------------------ARNSAILYLLYGCGLRISEALS 175
           L L D     T     +ID                    R+ AI+ LL   G+R+SEA++
Sbjct: 161 LFLGD----ETEGFLNYIDQEYPQTLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVN 216

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-------LP 228
           L  +++      + +  KG K   V +  +  K  LE Y L   D     +       L 
Sbjct: 217 LDLRDLNLKMMVIDVTRKGGKRDSVNV-AAFAKPYLEQY-LAIRDKRYKTEKTDTALFLT 274

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           L+RG+  + ++    ++ + +        +  T H LRH+ AT L         +   LG
Sbjct: 275 LYRGVPNR-IDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQLG 331

Query: 289 HFRLSTTQIYTNV---NSKNGGD 308
           H     T +YT++     KN  D
Sbjct: 332 HASTQVTDLYTHIVNDEQKNALD 354


>gi|289167902|ref|YP_003446171.1| integrase/ recombinase [Streptococcus mitis B6]
 gi|288907469|emb|CBJ22306.1| integrase/ recombinase [Streptococcus mitis B6]
          Length = 356

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 99/255 (38%), Gaps = 43/255 (16%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--------PRALNEK 132
           Q +   ++ R+LS + S  KYL +     +      RN+ K  S          RA N K
Sbjct: 99  QGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIK 158

Query: 133 QALTLVDNVLLHTSHETKWID-------------------ARNSAILYLLYGCGLRISEA 173
           Q L L D     T     +ID                    R+ AI+ LL   G+R+SEA
Sbjct: 159 QKLFLGD----ETEGFLTYIDQEYPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEA 214

Query: 174 LSLTPQNI---MDDQSTLRIQGKGDKIRIV----PLLPSVRKAILEYYDLCPFDLNLNIQ 226
           ++L  +++   M      R  GK D + +     P L +      + Y     D  L   
Sbjct: 215 VNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKTDTALF-- 272

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           L L+RG+  + ++    ++ + +        +  T H LRH+ AT L         +   
Sbjct: 273 LTLYRGVPNR-IDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQ 329

Query: 287 LGHFRLSTTQIYTNV 301
           LGH     T +YT++
Sbjct: 330 LGHASTQVTDLYTHI 344


>gi|218281819|ref|ZP_03488158.1| hypothetical protein EUBIFOR_00726 [Eubacterium biforme DSM 3989]
 gi|218217108|gb|EEC90646.1| hypothetical protein EUBIFOR_00726 [Eubacterium biforme DSM 3989]
          Length = 481

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS-NGGDLRSIQSILGHFRLS 293
           G PL  G  +  +++L     LP     H+ RHS  T+ L  NGGD++++Q   GH +++
Sbjct: 347 GLPLGDGAIRGPLKKLIEDYNLP-PVVFHSFRHSSVTYKLKLNGGDIKAVQGDSGHAQVN 405

Query: 294 -TTQIYTNV 301
             T +Y+++
Sbjct: 406 MVTDVYSHI 414


>gi|193065402|ref|ZP_03046472.1| w0040 [Escherichia coli E22]
 gi|192926929|gb|EDV81553.1| w0040 [Escherichia coli E22]
          Length = 246

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 20/163 (12%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRI----------QGKGDKIRIV 200
           D R+  +   L+  G+RI EA  LTP++   D  +  +RI          +   D++R+V
Sbjct: 59  DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLV 118

Query: 201 PL--LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           PL  +  VR+  +E + +         + PL+  +  + +   + Q   R     +   +
Sbjct: 119 PLTDISYVRQ--MESWMIT---TRPRRRAPLW-AVTDETMRNWLKQAVKRAEADGVHFSI 172

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 173 PVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|167754263|ref|ZP_02426390.1| hypothetical protein ALIPUT_02556 [Alistipes putredinis DSM 17216]
 gi|167658888|gb|EDS03018.1| hypothetical protein ALIPUT_02556 [Alistipes putredinis DSM 17216]
          Length = 199

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 14/153 (9%)

Query: 160 LYLLYGC-----GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           L+ LY C       R+S+ LS+T ++++D  +  +I+ K  K R +P   +V++ I   Y
Sbjct: 34  LWELYCCISFCTACRVSDVLSMTWKDVLDRDALYKIEQKTGKTRQIPFNENVQRRITSLY 93

Query: 215 DLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATH 272
            L     + + +LP+    +  KP         ++ LR    LP+   ++HT R +F  +
Sbjct: 94  KLLG---SPDKRLPVICNPKTKKPYTTQYINDTLKYLRVKYRLPIKRFSSHTFRKTFGRY 150

Query: 273 LLSNGG----DLRSIQSILGHFRLSTTQIYTNV 301
           +  + G     L  +  IL H     T +Y  +
Sbjct: 151 VYESMGRTTEALILLSMILKHSSPQVTMVYLGI 183


>gi|149006181|ref|ZP_01829893.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP18-BS74]
 gi|307127245|ref|YP_003879276.1| tyrosine recombinase XerC [Streptococcus pneumoniae 670-6B]
 gi|147761958|gb|EDK68920.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP18-BS74]
 gi|306484307|gb|ADM91176.1| tyrosine recombinase XerC [Streptococcus pneumoniae 670-6B]
 gi|332075092|gb|EGI85563.1| phage integrase family protein [Streptococcus pneumoniae GA17545]
          Length = 356

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 100/255 (39%), Gaps = 43/255 (16%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--------PRALNEK 132
           Q +   ++ R+LS + S  KYL +     +      RN+ K  S          RA N K
Sbjct: 99  QGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIK 158

Query: 133 QALTLVDNVLLHTSHETKWID-------------------ARNSAILYLLYGCGLRISEA 173
           Q L L D     T     +ID                    R+ AI+ LL   G+R+SEA
Sbjct: 159 QKLFLGD----ETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEA 214

Query: 174 LSLTPQNI---MDDQSTLRIQGKGDKIRIV----PLLPSVRKAILEYYDLCPFDLNLNIQ 226
           ++L  +++   M   +  R  GK D + +     P L +      + Y     D  L   
Sbjct: 215 VNLDLRDLNLKMMVINVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKTDTALF-- 272

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           L L+RG+  + ++    ++ + +        +  T H LRH+ AT L         +   
Sbjct: 273 LTLYRGVPNR-IDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQ 329

Query: 287 LGHFRLSTTQIYTNV 301
           LGH     T +YT++
Sbjct: 330 LGHASTQVTDLYTHI 344


>gi|332877744|ref|ZP_08445485.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332684324|gb|EGJ57180.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 411

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGDWMMEI 313
           H  RH+F T  L+ G  L S+  ++GH  + TTQIY  + N K   D  MEI
Sbjct: 351 HWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKD--MEI 400


>gi|329117413|ref|ZP_08246130.1| site-specific recombinase, phage integrase family [Streptococcus
           parauberis NCFD 2020]
 gi|326907818|gb|EGE54732.1| site-specific recombinase, phage integrase family [Streptococcus
           parauberis NCFD 2020]
          Length = 362

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 21/163 (12%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-------------IQGKGDKIRI 199
           D    A+  LL   G+R  E L+LT  ++ ++  T+              +       R+
Sbjct: 185 DIEKIALFRLLAFTGIRKGELLALTWDDLNNNTLTINKAVTRTFTGLEIDVTKTKSSDRL 244

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           + L     + + E ++  P          +F+   G  + P + ++++ QL     LP  
Sbjct: 245 ISLDDETVEILNELHETFP------TSTLMFQSESGGIMTPSLPRKWLLQLTSDTKLP-P 297

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
            T H  RH+ A+ L  +G  L+ +Q  LGH  L TT  +YT++
Sbjct: 298 ITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHI 340


>gi|324997951|ref|ZP_08119063.1| prophage integrase [Pseudonocardia sp. P1]
          Length = 450

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 7/67 (10%)

Query: 236 KPLNPGVFQRYI-RQLRRYLGLPLSTTA------HTLRHSFATHLLSNGGDLRSIQSILG 288
           +P+ P +F + + +   R  GLP S         H LRH+FAT  L  G D R +   LG
Sbjct: 341 QPVEPSLFYKNVLKPALRAAGLPASAPGVKGVRLHDLRHTFATLALDAGHDYREVSEWLG 400

Query: 289 HFRLSTT 295
           H   +TT
Sbjct: 401 HADYTTT 407


>gi|315641378|ref|ZP_07896453.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952]
 gi|315482871|gb|EFU73392.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952]
          Length = 316

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 16/154 (10%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           ++ L+   GLR SEAL+LTP++      T+ +    +           + A  + +    
Sbjct: 149 LILLIAKTGLRFSEALALTPEDFNFFNQTISVTKTWNYKTNEGGFMGTKNASSKRH--VS 206

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQR----------YIRQLRRYLGLPLSTTAHTLRHS 268
            D    +Q      I+  P N  +F +           +R+  +  G+P+  T H LRH+
Sbjct: 207 IDWKTGMQFAQL--IKDLPDNEPIFVKERVFNSTVNNLLRRCCKKTGIPI-ITVHGLRHT 263

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
            A+ LL  G  + S+   LGH  ++TT QIY ++
Sbjct: 264 HASLLLFAGVSIASVARRLGHANMTTTQQIYLHI 297


>gi|227431405|ref|ZP_03913455.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227352833|gb|EEJ43009.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 375

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 53/98 (54%), Gaps = 6/98 (6%)

Query: 209 AIL-EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           A+L ++Y++  ++ N +    +F   +GK L      +++  +    G+ +  + H LRH
Sbjct: 268 AVLSDWYEVSHYNSNDDF---VFNN-QGKTLQVMRPNKWLHDVSDKYGVAVGLSMHKLRH 323

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
           ++AT  L  G  ++ +Q+ LGH  +S T  +Y+++  +
Sbjct: 324 TWATLALDQGASVKQVQTYLGHADVSMTLDVYSDITKR 361


>gi|227893573|ref|ZP_04011378.1| phage integrase [Lactobacillus ultunensis DSM 16047]
 gi|227864625|gb|EEJ72046.1| phage integrase [Lactobacillus ultunensis DSM 16047]
          Length = 310

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 27/148 (18%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-KIRIVPLLP-----SVRKAILE 212
             YL+   GLR +EAL+LTP++   ++ +L I    + K +I    P     S R  +++
Sbjct: 140 FFYLISKTGLRFAEALALTPEDFDFEKQSLVINKSWNYKEKIGHFQPTKNTSSNRTVMVD 199

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRRYLGLPLST----------T 261
           +  +  F   +N          GK P +P  F++  R     L   L+T          +
Sbjct: 200 WQLMQQFQTMIN----------GKDPKSPIFFEKNQRIYNSTLNQKLATYCRQSEIPIIS 249

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGH 289
            H LRH+ A+ LL  G  + S+   LGH
Sbjct: 250 IHGLRHTHASLLLYEGVSVASVAKRLGH 277


>gi|260641905|ref|ZP_05413973.2| integrase [Bacteroides finegoldii DSM 17565]
 gi|260624204|gb|EEX47075.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 55

 Score = 41.2 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 27/38 (71%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           T +T RHSF T +LS+G  + SI  ++GH  +++TQ+Y
Sbjct: 17  TPYTARHSFGTLMLSSGIPIESIAKMMGHTNINSTQVY 54


>gi|298384856|ref|ZP_06994415.1| site-specific recombinase IntIA [Bacteroides sp. 1_1_14]
 gi|298262000|gb|EFI04865.1| site-specific recombinase IntIA [Bacteroides sp. 1_1_14]
          Length = 316

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 12/82 (14%)

Query: 229 LFRGIRG--KPLNPGVFQRYIRQLRRY----------LGLPLSTTAHTLRHSFATHLLSN 276
           LF  +RG   P    +++ Y   LRR+          L L  + T++T+RHS+AT+    
Sbjct: 210 LFSILRGNKSPKGESMYKEYQSALRRFNNQLKSLSRELHLKSAVTSYTIRHSWATNAKYQ 269

Query: 277 GGDLRSIQSILGHFRLSTTQIY 298
           G  +  I   LGH  + TTQIY
Sbjct: 270 GIPIEMISESLGHKSIKTTQIY 291


>gi|228927542|ref|ZP_04090595.1| Phage integrase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228832150|gb|EEM77734.1| Phage integrase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
          Length = 317

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 123/287 (42%), Gaps = 24/287 (8%)

Query: 31  LSKLTLQSYECDTRQFLIFL--AFYTEEKIT------IQTIRQLSYTEIRAFISKRRTQK 82
           LS  TL+SYE    +F ++L      EE+ +      ++ I+     +   +  K R+  
Sbjct: 19  LSHRTLESYENTLNEFRLWLNGCNGNEEEASSRAVTHVEDIKSQHIKDYMRYCYKERSN- 77

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESN--ILNMRNLKKSNSLPRALNEKQALTLVDN 140
               ++   L+ +K +  YL +  +  E N   L ++N +K  ++   L E+Q   ++ +
Sbjct: 78  -SHTTVAGKLTNLKVYFNYLAQEGLIEERNNPTLRVKNPRKDTNV-ETLTEEQIRLILRH 135

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +      +  +   R+  ++  L G G R+ E + L  ++I D ++   +     K R  
Sbjct: 136 LRRRRRVD-DFYHYRDYTLVVFLLGTGARLGEIMDLRWEDI-DLKAGQVVFPDTGKARTQ 193

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPG----VFQRYIRQLRRYL 254
              P   K I E  D   +  N    LP  LF    G+ ++      VF R  ++L    
Sbjct: 194 QGQPLGAKLISELKDYKQYLENDTYGLPAYLFTTRTGRKMSREAIKLVFVRLAQELNFKS 253

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           G     +AH+LRH + + L+  G     +Q ++ H ++ TT  Y  +
Sbjct: 254 G---RVSAHSLRHFYCSSLIKAGVSPFVVQKLMRHSKIETTMKYVTL 297


>gi|226325984|ref|ZP_03801502.1| hypothetical protein COPCOM_03798 [Coprococcus comes ATCC 27758]
 gi|225205526|gb|EEG87880.1| hypothetical protein COPCOM_03798 [Coprococcus comes ATCC 27758]
          Length = 214

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 24/33 (72%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           H LRH+F ++LLSNG   + +Q +LGH  +STT
Sbjct: 156 HMLRHTFTSNLLSNGAAPKDVQELLGHADVSTT 188


>gi|224025935|ref|ZP_03644301.1| hypothetical protein BACCOPRO_02681 [Bacteroides coprophilus DSM
           18228]
 gi|224019171|gb|EEF77169.1| hypothetical protein BACCOPRO_02681 [Bacteroides coprophilus DSM
           18228]
          Length = 393

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 57/269 (21%), Positives = 107/269 (39%), Gaps = 64/269 (23%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI------LN 115
           T    +Y+ ++ F +  R ++    ++ + +  +K+F+     + +   SN       + 
Sbjct: 144 TFEDFTYSFLQEFETYLRKRQYTINTIAKHMKHLKTFINEAINQDLMDSSNYPFRKYKIK 203

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEA 173
           M   K +   P  ++  + L L     L  SH    +DA        L+ C  GLR S+ 
Sbjct: 204 MTESKHTFLRPEEISSLENLKLP----LRWSHLQHTLDA-------FLFCCYTGLRYSDF 252

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
             L+  N+M DQ            +I  +  SV+  +               +LPL    
Sbjct: 253 THLSSDNLMKDQK-----------QIWLVFTSVKTGV-------------ETRLPLRLLF 288

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLST-------------------TAHTLRHSFATHLL 274
           +GK L   +  +Y + L  +  L  ++                   + H+ RH+ A+ L+
Sbjct: 289 QGKAL--LLLNKYRKDLEFFFRLKKNSLVNKELIRIGKLAQITQHFSFHSARHTNASLLI 346

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             G  + ++Q +LGH  + TTQ Y+N+ S
Sbjct: 347 YQGAQITTVQKLLGHRSIKTTQGYSNIFS 375


>gi|116872619|ref|YP_849400.1| phage integrase, putative [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741497|emb|CAK20621.1| phage integrase, putative [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 314

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 13/150 (8%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-----KIRIVPLLPSVRKAILEY 213
            + L+   G+R +EAL++TP +      T+ I    D            L SVR   +++
Sbjct: 140 FVMLVAKTGMRYAEALAITPADFDWTAQTISINKTWDYKYNKGFAKTKTLSSVRTIKIDW 199

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-YIRQLRRYLGLPLSTTA------HTLR 266
             +  F   L   LP    I  +    G ++R +   +  +L      T       H LR
Sbjct: 200 QIVGQFK-PLIKDLPENEPIFVEKFGDGTYKRQFNSTINNFLAAKCKETGITQISFHALR 258

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           H+ A+ LL+ G  + +I + LGH  +  TQ
Sbjct: 259 HTHASVLLAEGVSIHTISARLGHADVGVTQ 288


>gi|29349324|ref|NP_812827.1| site-specific recombinase IntIA [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29341232|gb|AAO79021.1| site-specific recombinase IntIA [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 316

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 12/82 (14%)

Query: 229 LFRGIRG--KPLNPGVFQRYIRQLRRY----------LGLPLSTTAHTLRHSFATHLLSN 276
           LF  +RG   P    +++ Y   LRR+          L L  + T++T+RHS+AT+    
Sbjct: 210 LFSILRGNKSPKGESMYKEYQSALRRFNNQLKSLSRELHLKSAVTSYTIRHSWATNAKYQ 269

Query: 277 GGDLRSIQSILGHFRLSTTQIY 298
           G  +  I   LGH  + TTQIY
Sbjct: 270 GIPIEMISESLGHKSIKTTQIY 291


>gi|295099066|emb|CBK88155.1| Phage integrase family. [Eubacterium cylindroides T2-87]
          Length = 462

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS-NGGDLRSIQSILGHFRLS 293
           G PL  G  +  +++L     LP     H+ RHS  T+ L  NGGD++++Q   GH +++
Sbjct: 329 GLPLGDGAIRGPLKKLIEDYNLP-PVVFHSFRHSSVTYKLKLNGGDIKAVQGDSGHAQVN 387

Query: 294 -TTQIYTNV 301
             T +Y+++
Sbjct: 388 MVTDVYSHI 396


>gi|288801867|ref|ZP_06407309.1| integrase [Prevotella melaninogenica D18]
 gi|288335909|gb|EFC74342.1| integrase [Prevotella melaninogenica D18]
          Length = 409

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +Q  ++ LR   G+    T HT RH+FAT + L  G  + ++  +LGH  +S T+ Y  V
Sbjct: 327 YQICLKALRLRAGISFPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKV 386

Query: 302 N 302
            
Sbjct: 387 T 387


>gi|284991405|ref|YP_003409959.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284064650|gb|ADB75588.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 377

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 87/205 (42%), Gaps = 34/205 (16%)

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNI 181
           P AL ++ A+   D   L        ++A    R  A+  ++   GLR  EAL+L  +++
Sbjct: 160 PAALVKRPAVERKDAGYLSAQQAEALLEAVRGDRLEALYRVMLATGLRRGEALALHWRDV 219

Query: 182 MDDQSTLRI--------------QGKGDKIR-IVPL-LPSV--------RKAILEYYDLC 217
             D + +R+              + K +K R  VPL +P+V        R+A  +   L 
Sbjct: 220 DLDAAVVRVRWTLSRTSAGLELGEPKTEKSRRTVPLPVPAVETLRAHRKRQAAEQ---LA 276

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
              L     L +F    G PL P    R    L    GL      HTLRHS A+ LL+ G
Sbjct: 277 AGSLWQASGL-VFTSEIGTPLEPRNVLRRFEALAERAGL-RGVHLHTLRHSAASFLLAAG 334

Query: 278 GDLRSIQSILGHFRLS-TTQIYTNV 301
              + +Q  LGH   + T  IY++V
Sbjct: 335 THTKVVQEHLGHSSYAITADIYSHV 359


>gi|153811766|ref|ZP_01964434.1| hypothetical protein RUMOBE_02159 [Ruminococcus obeum ATCC 29174]
 gi|149832169|gb|EDM87254.1| hypothetical protein RUMOBE_02159 [Ruminococcus obeum ATCC 29174]
          Length = 481

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS-NGGDLRSIQSILGHFRLS 293
           G PL  G  +  +++L     LP     H+ RHS  T+ L  NGGD++++Q   GH +++
Sbjct: 347 GLPLGDGAIRGPLKKLIEDYNLP-PVVFHSFRHSSVTYKLKLNGGDIKAVQGDSGHAQVN 405

Query: 294 -TTQIYTNV 301
             T +Y+++
Sbjct: 406 MVTDVYSHI 414


>gi|167621619|ref|YP_001672127.1| integrase family protein [Caulobacter sp. K31]
 gi|167645970|ref|YP_001683633.1| integrase family protein [Caulobacter sp. K31]
 gi|167646191|ref|YP_001683854.1| integrase family protein [Caulobacter sp. K31]
 gi|167348400|gb|ABZ71135.1| integrase family protein [Caulobacter sp. K31]
 gi|167348621|gb|ABZ71356.1| integrase family protein [Caulobacter sp. K31]
 gi|167351742|gb|ABZ74468.1| integrase family protein [Caulobacter sp. K31]
          Length = 313

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213
           S +  L+   GLRISEAL+L  +++  +   LR+ QGK  K R++PL PSV   +++Y
Sbjct: 131 STLFGLIAVTGLRISEALALDGEDLEINHGVLRVRQGKLGKERLLPLDPSVVAQMIDY 188


>gi|329113917|ref|ZP_08242684.1| Shufflon-specific DNA recombinase [Acetobacter pomorum DM001]
 gi|326696664|gb|EGE48338.1| Shufflon-specific DNA recombinase [Acetobacter pomorum DM001]
          Length = 392

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 64/156 (41%), Gaps = 35/156 (22%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           L LL GC  R+ E  +L  + +      LR+       ++VP+  +              
Sbjct: 241 LLLLTGC--RLGEIQTLKWEYVDARAGVLRLPDSKTGAKVVPIGKAA------------- 285

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVF------------QRYIRQLRRYLGLPLSTTAHTLRH 267
            L++   +P   G      NP V             Q+  R+LR   GL  +   H LRH
Sbjct: 286 -LDVLADIPRIEG------NPYVITGKMEGQYLTDTQKPWRRLRARAGLD-TLRIHDLRH 337

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           SFA+  L  G DL  I  +LGH ++ TT  Y ++ +
Sbjct: 338 SFASDALQLGADLTMIGRLLGHTQVQTTARYAHLKT 373


>gi|319901621|ref|YP_004161349.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319416652|gb|ADV43763.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 407

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           Y++++    G+  + T H  RH+FAT   L+ G  + ++  +LGH  + TTQIY  + +
Sbjct: 328 YLKEIGDLCGINKNITFHFARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITN 386


>gi|289751559|ref|ZP_06510937.1| integrase xerC [Mycobacterium tuberculosis T92]
 gi|289692146|gb|EFD59575.1| integrase xerC [Mycobacterium tuberculosis T92]
          Length = 292

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 74/183 (40%), Gaps = 11/183 (6%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + L ++ G S  T ++Y  D R    FLA          ++  L+ + +R++++      
Sbjct: 10  EYLALQCGRSVHTRRAYLGDLRSLFAFLADRGS------SLDALTLSVLRSWLAATAGAG 63

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
               +L R  S +K+F  +  +R +        ++  K   +LP  L + QAL  +    
Sbjct: 64  AARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMAAAE 123

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
                    +  R+  I+ LLY  G+R+SE   L     +DD  T    G G  +     
Sbjct: 124 SGAEQGDP-LALRDRLIVELLYATGIRVSELCGLD----VDDIDTGHRLGSGAPLGTTSS 178

Query: 203 LPS 205
            PS
Sbjct: 179 APS 181


>gi|282598730|ref|YP_003358821.1| phage integrase protein [Enterococcus phage phiEf11]
 gi|300861304|ref|ZP_07107391.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|307290877|ref|ZP_07570768.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|258598100|gb|ACV83357.1| phage integrase protein [Enterococcus phage phiEf11]
 gi|300850343|gb|EFK78093.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|306498077|gb|EFM67603.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
          Length = 378

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 20/163 (12%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-------KIRIVP-LLPSVRKAILEY 213
            +Y  GLR  EA+SLT  + + ++  + + G  D         + +P  L S RK  L  
Sbjct: 202 FMYLTGLRAGEAISLTINDYVKNEHAILVNGTLDYSNGYKNATKELPKTLASFRKVELSN 261

Query: 214 YDLCPFD---LNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLG---LPLSTTA 262
             +   +   L   I+       LF G  G P+    F   +++    LG   +  + ++
Sbjct: 262 RAVEIIEELILEREIKFKEQTNYLFVGKTGNPIQVNSFNASLKKANESLGKNKINKTISS 321

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
           H  RHS  + L      +++I   +GH    TT +IYT+V  K
Sbjct: 322 HIFRHSHISLLAELNVPVKAIMERVGHVDTETTLKIYTHVTKK 364


>gi|301163084|emb|CBW22633.1| putative transposase [Bacteroides fragilis 638R]
          Length = 419

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 261 TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T H  RHSFAT + L+ G  + S+  +LGH  + TTQIY  V
Sbjct: 350 TYHLARHSFATEICLTKGVPIESVSKMLGHTNIQTTQIYARV 391


>gi|326790950|ref|YP_004308771.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326541714|gb|ADZ83573.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 185

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 12/147 (8%)

Query: 161 YLLYGCGL----RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           Y+L+  GL    RIS+ L L  +++ D +     + K +K   + +   +RK   +Y   
Sbjct: 28  YVLFMSGLYLGRRISDILPLRVRDVRDKKQIYFREKKKNKEITLDINDDLRKIFKDY--- 84

Query: 217 CPFDLNLNIQLPLFRGIRGK--PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           C    +      LFR  +GK  P+    +   + Q  + +G       H++R S    L 
Sbjct: 85  CKGKRDYEY---LFRRSKGKNEPITRQQYWYILNQAAKKIGYEEKIGCHSMRKSLGRWLY 141

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301
            NG D+  I  IL H  +  T+ Y  V
Sbjct: 142 DNGVDVYKIMLILNHESIDYTKRYIGV 168


>gi|260890962|ref|ZP_05902225.1| integrase [Leptotrichia hofstadii F0254]
 gi|260859515|gb|EEX74015.1| integrase [Leptotrichia hofstadii F0254]
          Length = 326

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           K + P  ++++ +++  +L +      H+LRH+FAT  +  G D +++  ILGH  +S T
Sbjct: 238 KYIEPRTYRKFFKKMLGFLEIR-KLRFHSLRHTFATQAIELGIDCKTVSEILGHSTVSIT 296

Query: 296 -QIYTNVNSKNGGDWMMEIYD 315
             +Y + +  +    M  I+D
Sbjct: 297 LNLYVHPDLDHKKKCMNIIFD 317


>gi|257451607|ref|ZP_05616906.1| integrase/recombinase, phage integrase family protein
           [Fusobacterium sp. 3_1_5R]
          Length = 346

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 5/149 (3%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL- 216
           A++ +L     R  E   +   +I  ++ ++R  GKG K+    L      A++EY +  
Sbjct: 186 AVIEILISTAFRRQELAEIKLSDIDFEKGSIRTIGKGKKLGYGFLNAKALLALIEYIEKE 245

Query: 217 ---CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                  L +  +   FR   G+P +       I+++ +  G+      H  R + AT  
Sbjct: 246 RESKSVFLFIRGKNKRFREKAGEPYDASSLYALIKKIGKKAGVT-HVHPHRFRRTAATKA 304

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           L  G  L  ++ +L H  + TT IYT +N
Sbjct: 305 LDRGLGLEDVKELLRHEDIKTTLIYTTLN 333


>gi|189468269|ref|ZP_03017054.1| hypothetical protein BACINT_04666 [Bacteroides intestinalis DSM
           17393]
 gi|189436533|gb|EDV05518.1| hypothetical protein BACINT_04666 [Bacteroides intestinalis DSM
           17393]
          Length = 432

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 261 TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T H  RHSFAT + L+ G  + S+  +LGH  + TTQIY  V
Sbjct: 363 TYHLARHSFATEICLTKGVPIESVSKMLGHTNIQTTQIYARV 404


>gi|160934533|ref|ZP_02081919.1| hypothetical protein CLOLEP_03405 [Clostridium leptum DSM 753]
 gi|156865986|gb|EDO59358.1| hypothetical protein CLOLEP_03405 [Clostridium leptum DSM 753]
          Length = 412

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 67/319 (21%), Positives = 124/319 (38%), Gaps = 75/319 (23%)

Query: 46  FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKK 104
           F  ++ F+ E+ I +   R  ++T    +I K     K+G   LK+    ++ F+ + ++
Sbjct: 78  FYTYMHFWHEKYILV---RLATHTNYEIYIEKHIYHSKLGSIPLKKLC--LEDFIDFFRE 132

Query: 105 RKIT----------TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT--------- 145
           ++++              + NMRN+  S +L RA+N  Q L       L T         
Sbjct: 133 KELSGRLDKKPGGLAPKTLRNMRNMM-SEALARAVNRLQWLDRNPIEGLKTPKVSPPQIQ 191

Query: 146 ----SHETK------WIDARNSAILYLLYGCGLRISEALSLT------------------ 177
               SH+T       + + +N+ ++ +    GLRI E   L+                  
Sbjct: 192 VYSKSHQTCIEQAALYHEDKNALMVLIDLYTGLRIGELCGLSWLDFGPGKEYFKIRRILE 251

Query: 178 ------PQNIMDDQSTLRIQGKGDKIRIVPLLP-----------SVRKAILEYYDLCPFD 220
                  +N  + Q    + GK +    + L P           +  +A+L +  +  + 
Sbjct: 252 RLSKKWAENRSEYQRIFMVGGKEEGATALYLGPPKTESGKRVVYTNDQAVLGFNRIETYQ 311

Query: 221 LNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
             +    P   LF    G P  P  + +  R + +  G+      HTLRH+FAT      
Sbjct: 312 KKMGFYRPDGFLFVNQNGNPYEPRAYNKLYRDVLQRAGVDYRKF-HTLRHTFATRAFELA 370

Query: 278 GDLRSIQSILGHFRLSTTQ 296
            D+ ++  ILGH + +TT+
Sbjct: 371 FDIPTLAEILGHAQKTTTE 389


>gi|153812120|ref|ZP_01964788.1| hypothetical protein RUMOBE_02516 [Ruminococcus obeum ATCC 29174]
 gi|149831775|gb|EDM86861.1| hypothetical protein RUMOBE_02516 [Ruminococcus obeum ATCC 29174]
          Length = 408

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 75/185 (40%), Gaps = 41/185 (22%)

Query: 159 ILYLLYGCGLRISEALSLTPQNI--------MDDQSTLRIQGKGDK-----------IRI 199
           +L ++ G G+R  E + LT +++        +D Q   +  G G K           IR 
Sbjct: 206 MLRIMLGTGVRCGELIGLTWEDVDVRTKAVSIDHQLIYKDLGDGYKFHISTPKTDSGIRT 265

Query: 200 VPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGI-----RGKPLNPGVFQRYIRQL--- 250
           +P+   V++A  E   L        ++++  ++G       G+PL P      +  +   
Sbjct: 266 IPMTSDVQRAFEEQKKLNFMLQKGKDVEIDGYKGFIFMAKSGRPLMPSAINNILYNIVDA 325

Query: 251 ------------RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QI 297
                        R   L  + +AH +RH+  T +     D++ +Q I+GH  +  T  +
Sbjct: 326 YNKKEVQIAKTEHRNAELLPTVSAHIMRHTACTRMAEKRMDVKVLQYIMGHAHIDVTMDV 385

Query: 298 YTNVN 302
           Y +V+
Sbjct: 386 YNHVS 390


>gi|16801471|ref|NP_471739.1| hypothetical protein lin2409 [Listeria innocua Clip11262]
 gi|16414931|emb|CAC97636.1| lin2409 [Listeria innocua Clip11262]
          Length = 314

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 13/150 (8%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-----KIRIVPLLPSVRKAILEY 213
            + L+   G+R +EAL++TP +      T+ I    D            L SVR   +++
Sbjct: 140 FVMLVAKTGMRYAEALAITPADFDWTAQTISINKTWDYKYNKGFAKTKTLSSVRTIKIDW 199

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-YIRQLRRYLGLPLSTTA------HTLR 266
             +  F   L    P    I  +    G ++R +   +  +L +  + T       H LR
Sbjct: 200 QIVGQFK-PLIKDFPEDEPIFVEKFGDGTYKRQFNSTINNFLAVKCNETGITQISFHALR 258

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           H+ A+ LL+ G  + +I + LGH  +  TQ
Sbjct: 259 HTHASVLLAEGVSIHTISARLGHADVGVTQ 288


>gi|15903090|ref|NP_358640.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           R6]
 gi|116516164|ref|YP_816497.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           D39]
 gi|148989189|ref|ZP_01820579.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP6-BS73]
 gi|149013106|ref|ZP_01833952.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP19-BS75]
 gi|168577171|ref|ZP_02722986.1| tyrosine recombinase XerC [Streptococcus pneumoniae MLV-016]
 gi|182684108|ref|YP_001835855.1| tyrosine recombinase [Streptococcus pneumoniae CGSP14]
 gi|225854634|ref|YP_002736146.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           JJA]
 gi|225861099|ref|YP_002742608.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|237650105|ref|ZP_04524357.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           CCRI 1974]
 gi|237822307|ref|ZP_04598152.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           CCRI 1974M2]
 gi|298230999|ref|ZP_06964680.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           str. Canada MDR_19F]
 gi|298255433|ref|ZP_06979019.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           str. Canada MDR_19A]
 gi|298502838|ref|YP_003724778.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           TCH8431/19A]
 gi|303260566|ref|ZP_07346532.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           SP-BS293]
 gi|303262700|ref|ZP_07348639.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           SP14-BS292]
 gi|303265234|ref|ZP_07351145.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           BS397]
 gi|303266997|ref|ZP_07352871.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           BS457]
 gi|303269261|ref|ZP_07355036.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           BS458]
 gi|34222796|sp|Q7ZAK7|XERS_STRR6 RecName: Full=Tyrosine recombinase xerS
 gi|122278617|sp|Q04KF1|XERS_STRP2 RecName: Full=Tyrosine recombinase xerS
 gi|229892080|sp|B2IPW6|XERS_STRPS RecName: Full=Tyrosine recombinase xerS
 gi|254799376|sp|C1CEC5|XERS_STRZJ RecName: Full=Tyrosine recombinase xerS
 gi|254799378|sp|C1CRN6|XERS_STRZT RecName: Full=Tyrosine recombinase xerS
 gi|15458667|gb|AAK99850.1| Integrase/recombinase [Streptococcus pneumoniae R6]
 gi|116076740|gb|ABJ54460.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae D39]
 gi|147763051|gb|EDK69994.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP19-BS75]
 gi|147925412|gb|EDK76490.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP6-BS73]
 gi|182629442|gb|ACB90390.1| tyrosine recombinase [Streptococcus pneumoniae CGSP14]
 gi|183577227|gb|EDT97755.1| tyrosine recombinase XerC [Streptococcus pneumoniae MLV-016]
 gi|225722579|gb|ACO18432.1| tyrosine recombinase XerC [Streptococcus pneumoniae JJA]
 gi|225727240|gb|ACO23091.1| tyrosine recombinase XerC [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238433|gb|ADI69564.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301794260|emb|CBW36681.1| tyrosine recombinase XerC [Streptococcus pneumoniae INV104]
 gi|301801972|emb|CBW34700.1| tyrosine recombinase XerC [Streptococcus pneumoniae INV200]
 gi|302636132|gb|EFL66628.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638279|gb|EFL68748.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           SP-BS293]
 gi|302641218|gb|EFL71590.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           BS458]
 gi|302643477|gb|EFL73750.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           BS457]
 gi|302645205|gb|EFL75441.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           BS397]
 gi|332076289|gb|EGI86755.1| phage integrase family protein [Streptococcus pneumoniae GA41301]
 gi|332200478|gb|EGJ14550.1| phage integrase family protein [Streptococcus pneumoniae GA41317]
 gi|332203014|gb|EGJ17082.1| phage integrase family protein [Streptococcus pneumoniae GA47901]
          Length = 356

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 99/255 (38%), Gaps = 43/255 (16%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--------PRALNEK 132
           Q +   ++ R+LS + S  KYL +     +      RN+ K  S          RA N K
Sbjct: 99  QGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIK 158

Query: 133 QALTLVDNVLLHTSHETKWID-------------------ARNSAILYLLYGCGLRISEA 173
           Q L L D     T     +ID                    R+ AI+ LL   G+R+SEA
Sbjct: 159 QKLFLGD----ETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEA 214

Query: 174 LSLTPQNI---MDDQSTLRIQGKGDKIRIV----PLLPSVRKAILEYYDLCPFDLNLNIQ 226
           ++L  +++   M      R  GK D + +     P L +      + Y     D  L   
Sbjct: 215 VNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKTDTALF-- 272

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           L L+RG+  + ++    ++ + +        +  T H LRH+ AT L         +   
Sbjct: 273 LTLYRGVPNR-IDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQ 329

Query: 287 LGHFRLSTTQIYTNV 301
           LGH     T +YT++
Sbjct: 330 LGHASTQVTDLYTHI 344


>gi|157157376|ref|YP_001464358.1| phage integrase family protein [Escherichia coli E24377A]
 gi|157079406|gb|ABV19114.1| phage integrase family protein [Escherichia coli E24377A]
          Length = 352

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 56/261 (21%), Positives = 109/261 (41%), Gaps = 38/261 (14%)

Query: 79  RTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +TQ +   +    ++ +++   + +KK  +    N L   ++ K     + LN+ Q + +
Sbjct: 66  KTQSLSTYTWNNKVAHLRAIFGFGIKKGLLPQTENPLCEASVAKEAKKKKTLNKDQMIQV 125

Query: 138 VDNVLLHTSHETKW---IDARNSA---------ILYLLYGCGLRISEALSLTPQNIMDDQ 185
              V     +ET+     D R +A         +L +L   G+R ++   +  +++   +
Sbjct: 126 YLVVQKFAEYETQQRVPCDRRRNALYPARYWLTVLDVLRYTGMRFNQLQHIRLKDVRPGE 185

Query: 186 STLRIQGKGDKIRIVPLLPSVR--KAILEY----------------YDLCPFDLNLNIQL 227
             + +Q +G K      +P V   KA LE                 +D+C F   +    
Sbjct: 186 GVIELQLEGSKTHREWCVPIVEPLKAPLELLLSRARRLGAGPDDFLFDVCRFTDCIEPDD 245

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL-SNGGDLRSIQSI 286
            ++   R      G F+R    L R  G  +S  AH  RH+ AT L+ S   ++  ++S+
Sbjct: 246 YVYCPARAHQAVKGFFRR----LSRECGFLVS--AHRFRHTLATILMESPERNMHLVKSM 299

Query: 287 LGHFRLSTTQIYTNVNSKNGG 307
           LGH  ++TT  Y +V+  +  
Sbjct: 300 LGHQSIATTMEYVDVSVASAA 320


>gi|322689216|ref|YP_004208950.1| phage integrase [Bifidobacterium longum subsp. infantis 157F]
 gi|320460552|dbj|BAJ71172.1| putative phage integrase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 391

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 112/271 (41%), Gaps = 34/271 (12%)

Query: 53  YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
           + E K   + I  +++ E++A++      K G  S+ R    ++       + K+ + SN
Sbjct: 96  HCEAKWAERQIGSITHAEVQAWVGSI-IDKSGAPSVSRPYQIMQGICSMAVRDKLIS-SN 153

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDN-VLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
             +   L +   LP+  + +  LT+     L + +   + +     A++ LL  CGLR  
Sbjct: 154 PCDGIELPR---LPKRKDRRIYLTITRLLALANEASNCRKLGEERRALILLLGFCGLRWG 210

Query: 172 EALSLTPQNIMDDQSTLRIQ--------------GKGDKIRIVPLLPSVRKAILEYYDLC 217
           EA  L  +++  D   L ++               K  + R VP+   V  A      L 
Sbjct: 211 EAAGLQRRDLDFDAGILHVRRNLVYVNAKWAEGTPKNHERRDVPMPRIVMDA------LK 264

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQR----YIRQLRRYLGLPLST--TAHTLRHSFAT 271
           P       +  +FR +RG P+      R    +   L R LG         H LRH+ A+
Sbjct: 265 PICEQREHEERVFRDVRGGPIRKQSLARETGWWTHTLTR-LGWKRDDWPVPHDLRHTAAS 323

Query: 272 HLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
             +  G +++++Q +LGH   S T  +Y ++
Sbjct: 324 LAVHAGANVKALQRMLGHKNASMTLDVYADL 354


>gi|319947054|ref|ZP_08021288.1| phage integrase family integrase/recombinase [Streptococcus
           australis ATCC 700641]
 gi|319747102|gb|EFV99361.1| phage integrase family integrase/recombinase [Streptococcus
           australis ATCC 700641]
          Length = 356

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 102/263 (38%), Gaps = 46/263 (17%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--------PRALNEKQA 134
           +   ++ R+LS + S  KYL +     +      RN+ K  +          RA N KQ 
Sbjct: 101 VSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATKKKKETLAARAENIKQK 160

Query: 135 LTLVDNVLLHTSHETKWID-------------------ARNSAILYLLYGCGLRISEALS 175
           L L D     T     +ID                    R+ AI+ LL   G+R+SEA++
Sbjct: 161 LFLGD----ETEGFLNYIDQEYPQTLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVN 216

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-------LP 228
           L  +++      + +  KG K   V +  +  K  LE Y L   D     +       L 
Sbjct: 217 LDLRDLNLKMMVIDVTRKGGKRDSVNV-AAFAKPYLEQY-LAIRDKRYKTEKTDTALFLT 274

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           L+RG+  + ++    ++ + +        +  T H LRH+ AT L         +   LG
Sbjct: 275 LYRGVPNR-IDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQLG 331

Query: 289 HFRLSTTQIYTNV---NSKNGGD 308
           H     T +YT++     KN  D
Sbjct: 332 HASTQVTDLYTHIVNDEQKNALD 354


>gi|315222973|ref|ZP_07864852.1| site-specific tyrosine recombinase XerS [Streptococcus anginosus
           F0211]
 gi|315187923|gb|EFU21659.1| site-specific tyrosine recombinase XerS [Streptococcus anginosus
           F0211]
          Length = 362

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 103/275 (37%), Gaps = 56/275 (20%)

Query: 68  YTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-- 124
           Y   R  ++   TQ  +   ++ R+LS + S  KYL +            RN+ K  S  
Sbjct: 91  YLRERPLLNANTTQNGVSQTTINRTLSALSSLYKYLTEEVENENGEPYFYRNVMKKVSTK 150

Query: 125 ------LPRALNEKQALTLVDNVLLHTSHETKWID-------------------ARNSAI 159
                   RA N KQ L L +     T     +ID                    R+ AI
Sbjct: 151 KKRETLAARAENIKQKLFLGE----ETEQFLNYIDDEYPKNLSNRALSSFDKNKERDLAI 206

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           + LL   G+R+SEA++L  +++      + +  KG K   V +  +  KA LE Y     
Sbjct: 207 IALLLASGVRLSEAVNLDLKDLNLKMMVIEVTRKGGKRDSVNV-AAFAKAYLERY----- 260

Query: 220 DLNLNIQLPLFRG-----------IRGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              L ++   ++             RG P  ++    ++ + +        +  T H LR
Sbjct: 261 ---LEVRSKRYKAEKSDTALFLTEYRGAPNRIDASSVEKMVAKYSE--DFKVRVTPHKLR 315

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H+ AT L         +   LGH     T +YT++
Sbjct: 316 HTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHI 350


>gi|296876504|ref|ZP_06900555.1| phage integrase family integrase/recombinase [Streptococcus
           parasanguinis ATCC 15912]
 gi|296432497|gb|EFH18293.1| phage integrase family integrase/recombinase [Streptococcus
           parasanguinis ATCC 15912]
          Length = 356

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 102/263 (38%), Gaps = 46/263 (17%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--------PRALNEKQA 134
           +   ++ R+LS + S  KYL +     +      RN+ K  +          RA N KQ 
Sbjct: 101 VSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATKKKKETLAARAENIKQK 160

Query: 135 LTLVDNVLLHTSHETKWID-------------------ARNSAILYLLYGCGLRISEALS 175
           L L D     T     +ID                    R+ AI+ LL   G+R+SEA++
Sbjct: 161 LFLGD----ETEGFLNYIDQEYPQTLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVN 216

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-------LP 228
           L  +++      + +  KG K   V +  +  K  LE Y L   D     +       L 
Sbjct: 217 LDLRDLNLKMMVIDVTRKGGKRDSVNV-AAFAKPYLEQY-LAIRDKRYKTEKTDTALFLT 274

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           L+RG+  + ++    ++ + +        +  T H LRH+ AT L         +   LG
Sbjct: 275 LYRGVPNR-IDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQLG 331

Query: 289 HFRLSTTQIYTNV---NSKNGGD 308
           H     T +YT++     KN  D
Sbjct: 332 HASTQVTDLYTHIVNDEQKNALD 354


>gi|254383832|ref|ZP_04999180.1| phage integrase [Streptomyces sp. Mg1]
 gi|194342725|gb|EDX23691.1| phage integrase [Streptomyces sp. Mg1]
          Length = 426

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 4/75 (5%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSIL 287
           +F    G+PL+P    R  R+L    G  L T   H LRHS AT LL  G DL  I+ +L
Sbjct: 322 VFTTPNGQPLDPTNLTRRFRRL--LHGAELRTIRFHDLRHSTATLLLEQGVDLVVIKELL 379

Query: 288 GHFRLSTTQ-IYTNV 301
           GH  +  T  +Y +V
Sbjct: 380 GHAHIGVTAGVYAHV 394


>gi|167033938|ref|YP_001669169.1| integrase family protein [Pseudomonas putida GB-1]
 gi|166860426|gb|ABY98833.1| integrase family protein [Pseudomonas putida GB-1]
          Length = 304

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 51/242 (21%), Positives = 103/242 (42%), Gaps = 11/242 (4%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           +L    + A ++  R       S    ++ I+  +    ++ +     +L +R +K +  
Sbjct: 49  RLEPGHVIALVAALRADGYAPNSSSLYVNAIRGVMNEAWRQGLIDHELLLRIREVKPATG 108

Query: 125 --LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             LP   N ++  +L+  ++   + + +    R++AI+ LLYG G+R SE++ +    + 
Sbjct: 109 TRLPPGRNLRR--SLIRELMDVCAADPRPQGVRDAAIIALLYGTGMRKSESVDIDLDQVD 166

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---RGIRGKPLN 239
               +L++ GKG+   +    P   + +  + DL   DL    +   F   R  RG  + 
Sbjct: 167 FQARSLQVVGKGNHQLVKYAPPWAFEKLQAWLDLRRQDLPAGAEDDPFLFNRIRRGSHIT 226

Query: 240 PG-VFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
              + +  I  + R  G  + +    H  R +F T ++    DL   Q +  H  + TT 
Sbjct: 227 RARITKHAIYYIARQRGAQVGVKIMPHDFRRAFITRVIEE-HDLSIAQKLAHHANIQTTA 285

Query: 297 IY 298
           IY
Sbjct: 286 IY 287


>gi|151222137|ref|YP_001332959.1| phage integrase [Staphylococcus aureus subsp. aureus str. Newman]
 gi|295428587|ref|ZP_06821214.1| phage integrase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|150374937|dbj|BAF68197.1| phage integrase [Staphylococcus aureus subsp. aureus str. Newman]
 gi|295127569|gb|EFG57208.1| phage integrase [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 353

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 73/148 (49%), Gaps = 5/148 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+S  L+++   G R+S A ++  ++I   ++T+ I  +  K    P   S+ K+ +++ 
Sbjct: 191 RSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDER--KTNTSPRYISIAKSDMKHI 248

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                   ++    +F+   G  +N       ++   R   +P+  T+H LRH+  ++LL
Sbjct: 249 MDVISTFAISYDGYIFKE-GGSIINLHAINNALKSACRVNNIPI-ITSHALRHTHCSYLL 306

Query: 275 SNGGDLRSIQSILGHFRLS-TTQIYTNV 301
           + G  +  I   LGH  ++ TT +Y+++
Sbjct: 307 AKGVSIHYISKRLGHKNIAITTSVYSHL 334


>gi|2497412|sp|Q47036|INTL_ECOLX RecName: Full=Probable site-specific recombinase in afa region
 gi|639967|emb|CAA54111.1| int [Escherichia coli]
          Length = 246

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 79/171 (46%), Gaps = 36/171 (21%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRI----------QGKGDKIRIV 200
           D R+  +   L+  G+RI EA  +TP++   D  +  +R+          +   D++R+V
Sbjct: 59  DQRHHMLFATLWNTGMRIGEARIVTPESFDLDGVRPFVRVLSEKVRARRGRPPKDEVRLV 118

Query: 201 PL--LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL---NPGVFQRYIRQ-LRRY- 253
           PL  +  VR+  +E + +              R  R +PL        + +++Q +RR  
Sbjct: 119 PLTDISYVRQ--MESWMIT------------TRPRRREPLWAVTDETMRNWLKQAVRRAE 164

Query: 254 ---LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              +   +S T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 165 ADGVHFSISVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|330885727|gb|EGH19876.1| cointegrase [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 107

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           K L+PG     +RQ+ +  G+P    T+H+LR  FAT   +NG DL+++ + +G   + +
Sbjct: 14  KALHPGSLISLLRQILQRAGIPAELYTSHSLRRGFATWATANGWDLKALMTYVGWKDIKS 73

Query: 295 TQIYTNVNSKNGG 307
              Y +     GG
Sbjct: 74  AMRYIDPAISFGG 86


>gi|322387855|ref|ZP_08061463.1| phage integrase family integrase/recombinase [Streptococcus
           infantis ATCC 700779]
 gi|321141357|gb|EFX36854.1| phage integrase family integrase/recombinase [Streptococcus
           infantis ATCC 700779]
          Length = 356

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 99/253 (39%), Gaps = 43/253 (16%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--------PRALNEKQA 134
           +   ++ R+LS + S  KYL +     +      RN+ K  +          RA N KQ 
Sbjct: 101 VSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATKKKKETLAARAENIKQK 160

Query: 135 LTLVDNVLLHTSHETKWID-------------------ARNSAILYLLYGCGLRISEALS 175
           L L D     T     +ID                    R+ AI+ LL   G+R+SEA++
Sbjct: 161 LFLGD----ETEGFLNYIDREYPQTLSNRALSSFNKNKERDIAIIALLLASGVRLSEAVN 216

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-------LP 228
           L  +++      + +  KG K   V +  +  K  LE Y L   D     +       L 
Sbjct: 217 LDLRDLNLKMMVIDVTRKGGKRDSVNV-AAFAKPYLEQY-LAIRDKRYKTEKTDTALFLT 274

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           L+RG+  + ++    ++ + +        +  T H LRH+ AT L         +   LG
Sbjct: 275 LYRGVPNR-IDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQLG 331

Query: 289 HFRLSTTQIYTNV 301
           H     T +YT++
Sbjct: 332 HASTQVTDLYTHI 344


>gi|312111597|ref|YP_003989913.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|312112615|ref|YP_003990931.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|311216698|gb|ADP75302.1| integrase family protein [Geobacillus sp. Y4.1MC1]
 gi|311217716|gb|ADP76320.1| integrase family protein [Geobacillus sp. Y4.1MC1]
          Length = 703

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 18/158 (11%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-------KGDKIRIVPLLPSVRKAIL 211
           ++++ +  GLRIS+ L LT   ++       I+        KG +I I   L S+   ++
Sbjct: 384 VIWVAFKTGLRISDVLGLTQDCLVKLNGKYYIETDIEKTYVKGHRIPIDDELASILAVLI 443

Query: 212 EYYDLCPFDLNLNIQLPLF---RGIR-GKPLNPGVFQRYIRQLRRYL------GLPLSTT 261
           +       D N N +  +F   RG R GKP      Q+ +  L +        G      
Sbjct: 444 DKSIKNSNDDN-NPEKYIFVRYRGSRKGKPFIQKWVQKQLNTLAKTKHITDENGNLFHFK 502

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            H  RH++A  +L++G D+ ++Q +L H     T  Y 
Sbjct: 503 THQFRHTYAVKMLNSGADILTVQELLAHASPEMTMRYA 540


>gi|148994508|ref|ZP_01823688.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP9-BS68]
 gi|168488988|ref|ZP_02713187.1| tyrosine recombinase XerC [Streptococcus pneumoniae SP195]
 gi|147927178|gb|EDK78214.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP9-BS68]
 gi|183572441|gb|EDT92969.1| tyrosine recombinase XerC [Streptococcus pneumoniae SP195]
 gi|332073503|gb|EGI83982.1| phage integrase family protein [Streptococcus pneumoniae GA17570]
          Length = 356

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 99/255 (38%), Gaps = 43/255 (16%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--------PRALNEK 132
           Q +   ++ R+LS + S  KYL +     +      RN+ K  S          RA N K
Sbjct: 99  QGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIK 158

Query: 133 QALTLVDNVLLHTSHETKWID-------------------ARNSAILYLLYGCGLRISEA 173
           Q L L D     T     +ID                    R+ AI+ LL   G+R+SEA
Sbjct: 159 QKLFLGD----ETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEA 214

Query: 174 LSLTPQNI---MDDQSTLRIQGKGDKIRIV----PLLPSVRKAILEYYDLCPFDLNLNIQ 226
           ++L  +++   M      R  GK D + +     P L +      + Y     D  L   
Sbjct: 215 VNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKTDTALF-- 272

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           L L+RG+  + ++    ++ + +        +  T H LRH+ AT L         +   
Sbjct: 273 LTLYRGVPNR-IDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQ 329

Query: 287 LGHFRLSTTQIYTNV 301
           LGH     T +YT++
Sbjct: 330 LGHASTQVTDLYTHI 344


>gi|29347687|ref|NP_811190.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|237718219|ref|ZP_04548700.1| transposase [Bacteroides sp. 2_2_4]
 gi|255008772|ref|ZP_05280898.1| transposase [Bacteroides fragilis 3_1_12]
 gi|313146514|ref|ZP_07808707.1| transposase [Bacteroides fragilis 3_1_12]
 gi|29339588|gb|AAO77384.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|229452403|gb|EEO58194.1| transposase [Bacteroides sp. 2_2_4]
 gi|313135281|gb|EFR52641.1| transposase [Bacteroides fragilis 3_1_12]
          Length = 419

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 261 TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T H  RHSFAT + L+ G  + S+  +LGH  + TTQIY  V
Sbjct: 350 TYHLARHSFATEICLTKGVPIESVSKMLGHTNIQTTQIYARV 391


>gi|317501286|ref|ZP_07959489.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316897250|gb|EFV19318.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 431

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
           H LRH++ ++LLSNG   + +Q +LGH  +STT  IY +   K   D
Sbjct: 373 HQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTTMNIYAHSTRKAKRD 419


>gi|303328556|ref|ZP_07358991.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
 gi|302861322|gb|EFL84261.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
          Length = 287

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 22/151 (14%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL----LPSVRK------AILEYYD 215
           G+R SE  SL   NI   Q  + + + K  K RIVPL    L  V+K       +L + +
Sbjct: 137 GMRASEIFSLRGANINVPQENIILHKTKNLKQRIVPLNSPSLNIVKKYHRKNAELLFHQE 196

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
                  + I     R +    LN G+     R              HTLRH+FA+ L+ 
Sbjct: 197 ESSNKQFVKISKKFRRAVEISGLNEGIIDNRYR-----------VVFHTLRHTFASWLVQ 245

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
            G  L+ + ++LGH  +  T+ Y ++    G
Sbjct: 246 RGVSLQVVSNLLGHSSVRVTERYAHLAPDQG 276


>gi|300172888|ref|YP_003772053.1| prophage integrase [Leuconostoc gasicomitatum LMG 18811]
 gi|299887266|emb|CBL91234.1| prophage Lp3 protein 1, integrase, putative [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 373

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 5/93 (5%)

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +YD   ++ + N       G   +PL P    +++  +    G+ +  + H LRH++AT 
Sbjct: 271 WYDTTKYNRDDNFVFT-HGGHTLQPLRP---NKWLHDVSDRYGVAVGLSMHKLRHTWATL 326

Query: 273 LLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
            L  G  ++ +Q+ LGH   S T  +Y+++  +
Sbjct: 327 ALDQGATVKQVQTYLGHADASITLNVYSDITKR 359


>gi|152991432|ref|YP_001357154.1| phage integrase family site specific recombinase [Nitratiruptor sp.
           SB155-2]
 gi|151423293|dbj|BAF70797.1| site-specific recombinase, phage integrase family [Nitratiruptor
           sp. SB155-2]
          Length = 365

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           HTLRH+FA+HL  NG  + +IQ ++ H  ++ T  Y  +   +G + +  +Y
Sbjct: 313 HTLRHTFASHLAINGTPIYTIQRLMNHKDINMTLRYAKLAPDSGREAVRSLY 364


>gi|150007391|ref|YP_001302134.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149935815|gb|ABR42512.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 403

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 67/153 (43%), Gaps = 20/153 (13%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVRKA 209
           AR + I   L   GL   +   L P +I    D +  +RI  K  K+   +PL P + + 
Sbjct: 240 ARRAFIFSTL--TGLAYVDIKLLHPHHIGTNADGRRYIRINRKKTKVEAFIPLHP-IAER 296

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           IL  Y+        + + P+F      PL N       + +L   +G   + T H  RHS
Sbjct: 297 ILSLYN------TTDDEKPVF------PLPNRDALWFEVHELGITIGKEENLTYHQSRHS 344

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           F T L+S    + SI  ++GH  + TTQ Y  +
Sbjct: 345 FGTFLISADIPIESIAKMMGHSNIRTTQGYARI 377


>gi|148267282|ref|YP_001246225.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150393332|ref|YP_001316007.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|257794856|ref|ZP_05643835.1| phage integrase [Staphylococcus aureus A9781]
 gi|258418172|ref|ZP_05682437.1| phage integrase [Staphylococcus aureus A9763]
 gi|258421469|ref|ZP_05684394.1| phage integrase [Staphylococcus aureus A9719]
 gi|258448948|ref|ZP_05697057.1| phage integrase [Staphylococcus aureus A6224]
 gi|258453926|ref|ZP_05701898.1| phage integrase [Staphylococcus aureus A5937]
 gi|282929257|ref|ZP_06336830.1| integrase [Staphylococcus aureus A10102]
 gi|295406551|ref|ZP_06816357.1| integrase [Staphylococcus aureus A8819]
 gi|297245277|ref|ZP_06929151.1| integrase [Staphylococcus aureus A8796]
 gi|147740351|gb|ABQ48649.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149945784|gb|ABR51720.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|257788828|gb|EEV27168.1| phage integrase [Staphylococcus aureus A9781]
 gi|257838965|gb|EEV63444.1| phage integrase [Staphylococcus aureus A9763]
 gi|257842395|gb|EEV66819.1| phage integrase [Staphylococcus aureus A9719]
 gi|257857844|gb|EEV80736.1| phage integrase [Staphylococcus aureus A6224]
 gi|257863791|gb|EEV86547.1| phage integrase [Staphylococcus aureus A5937]
 gi|282589133|gb|EFB94231.1| integrase [Staphylococcus aureus A10102]
 gi|285816526|gb|ADC37013.1| Integrase [Staphylococcus aureus 04-02981]
 gi|294968696|gb|EFG44719.1| integrase [Staphylococcus aureus A8819]
 gi|297177948|gb|EFH37197.1| integrase [Staphylococcus aureus A8796]
 gi|315128960|gb|EFT84957.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           CGS03]
          Length = 349

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 18/168 (10%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           L++  GLRI EA++L   +    +  + I    D I    + P  +    E  D+ P   
Sbjct: 187 LMFYTGLRIGEAMALVWTDYNKYKKEISINKTMD-ISNRTIFPRPKTDSSE--DIVPLPK 243

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQR------------YIRQLRRYLGLPLSTTAHTLRHSF 269
            +N  L   R  R K LN    +R            Y    +++         H LRHS+
Sbjct: 244 FINTMLTE-RHQREKELNKYFDERSYFIFGGMAPKHYSHVQKKFQKAFPHYNIHALRHSY 302

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQ 316
           A++L +NG D+  +QS++ H +++ T   Y+++ ++   D  + I+D+
Sbjct: 303 ASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKKHD-AIAIFDK 349


>gi|88602293|ref|YP_502471.1| phage integrase [Methanospirillum hungatei JF-1]
 gi|88187755|gb|ABD40752.1| phage integrase [Methanospirillum hungatei JF-1]
          Length = 408

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 13/144 (9%)

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDK 196
           D V+   SH       +N AI+  LY  G+RI E  +L    +   ++  ++    K  K
Sbjct: 152 DQVMSMISHAGS---IKNQAIISTLYEGGMRIGEIGNLQWNQVKFHEEHVSISTTFKTGK 208

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRY 253
            R +PL  S R  + ++ +    + + N   P   +F    G P +     + IR+    
Sbjct: 209 ARTIPLFNS-RGYLAQWKN----EYSGNADKPGAFVFVKSDGSPYSYAGLVKMIRKAATN 263

Query: 254 LGLPLSTTAHTLRHSFATHLLSNG 277
            G+  + T H  RHS  THL+  G
Sbjct: 264 AGIEHTITPHVFRHSRITHLIKEG 287


>gi|4958942|dbj|BAA78093.1| aminoglycoside adenyltransferase [Corynebacterium glutamicum]
          Length = 309

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 105/277 (37%), Gaps = 58/277 (20%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T Q+Y    R F+ F          ++    L  +E+ AF+S    ++    S  R    
Sbjct: 33  TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + + L +  K   T    +  +   + S  LP  L   + + ++            +++ 
Sbjct: 83  LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207
            +     LLYG G+RISE L L  +++  D  T+ + +GKG K R  ++P  L PS+R  
Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191

Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                                         +A   +     F  + +   P    +R   
Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           +    FQR  ++     G+    T HTLRHSFAT LL
Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALL 288


>gi|291522979|emb|CBK81272.1| Phage integrase family [Coprococcus catus GD/7]
          Length = 463

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS-NGGDLRSIQSILGHFRLS 293
           G PL  G  +  +++L     LP     H+ RHS  T+ L  NGGD++++Q   GH +++
Sbjct: 329 GLPLGDGAIRGPLKKLIEDYNLP-PVVFHSFRHSSVTYKLKLNGGDIKAVQGDSGHAQVN 387

Query: 294 -TTQIYTNV 301
             T +Y+++
Sbjct: 388 MVTDVYSHI 396


>gi|289628910|ref|ZP_06461864.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289646876|ref|ZP_06478219.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|330870373|gb|EGH05082.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 321

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 110/253 (43%), Gaps = 30/253 (11%)

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            + A ++  R       +    ++ I+  +    +  + +   +L +R++K  +    A 
Sbjct: 71  HVTALVATLREDDYAPNTTSLYVNAIRGVMNEAWRHDLISHEQLLKIRSIKPVSGTRLAK 130

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
                 TL+  ++   + + +    R++AI+ +L G G+R SE+++L    I   + +LR
Sbjct: 131 GRNIRRTLIRELMQACAADPRPQGRRDAAIIAILCGSGMRKSESVNLDLSQIDFAERSLR 190

Query: 190 IQGKGDKIRIVPLLPS-VRKAILEYYDL---C--------PFDLNLNIQLPLFRGIRGKP 237
           + GKG+K +++   P    KA+ ++ +L   C        PF  N        R  RG  
Sbjct: 191 VLGKGNK-QLIKYAPEWAFKALNDWLELRRSCLQPGQGDDPFLFN--------RIRRGSH 241

Query: 238 LNPGVFQRY-----IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +      ++      +Q  R +G  ++   H  R SF T ++    DL   Q +  H  +
Sbjct: 242 ITRDRITKHAIYFIAKQRGRQVG--VNIMPHDFRRSFITRVIEE-FDLSIAQKLAHHTHI 298

Query: 293 STTQIYTNVNSKN 305
           STT  Y ++ S+N
Sbjct: 299 STTASY-DMRSEN 310


>gi|332880984|ref|ZP_08448654.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332681158|gb|EGJ54085.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 407

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 19/151 (12%)

Query: 162 LLYGC-GLRISEALSLTPQNIMDD------QSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
            +Y C G+  ++ L L   +I+D       Q T R      +IR    +    +A+++ +
Sbjct: 242 FIYLCNGINPTDMLKLKFSDIVDGEICFVRQKTERTTKNRKEIR--ATISVQMQAVIDKW 299

Query: 215 DLCPFDLNLNIQLPLFRG----IRGKPLNPGVFQRYIRQLR---RYLGLPLSTTAHTLRH 267
              P  L  N   P  +G    I  K +  G+ +R  ++++     LG+  + T +T RH
Sbjct: 300 GNKP--LPDNYIFPYMKGNETAIEAKAITRGIVKRINKRMKLIGEELGIG-NITTYTARH 356

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           S+AT L  +G ++  I   LGH  L TT+ Y
Sbjct: 357 SYATVLKRSGVNISYISESLGHTDLRTTETY 387


>gi|325288244|ref|YP_004264425.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324963645|gb|ADY54424.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 322

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 107/250 (42%), Gaps = 33/250 (13%)

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNE 131
           A+  ++ T+  G+ + +  L  ++ F +YL +      + +L+    KK    +P   +E
Sbjct: 58  AWAVRKNTE--GNNTFRNRLMPVREFARYLNR--CGEPAFVLHPNFAKKGQRHIPHIYSE 113

Query: 132 KQALTLVDNVLLHTSHETKWIDARN---SAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++   L D VL H     K    R+     ++ LLY CGLR  EA  L   ++  ++  L
Sbjct: 114 EEIAELWD-VLDHLR-PRKGYPIRHFVLPTLVRLLYCCGLRPCEARKLRTADVDLEKGRL 171

Query: 189 RI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVF 243
            I + KG K RIV +   V +    Y      D  ++  +P     F    G        
Sbjct: 172 EIMESKGHKSRIVMIADDVVEMCRRY------DEIVSRLMPGRELFFPNSDGNLYTKEWL 225

Query: 244 QRYIRQLRRYLGLPLSTTA----HTLRHSFATH----LLSNGGDLRS----IQSILGHFR 291
           ++  R  +   G+  S       +  RH+FATH     + +G D+ +    + + +GH +
Sbjct: 226 EKTFRIAKAKAGIGASGEHSPRLYDFRHTFATHRLYQWMRDGKDVTAMLPYLSAYMGHTQ 285

Query: 292 LSTTQIYTNV 301
           LS T  Y ++
Sbjct: 286 LSDTYYYIHL 295


>gi|317485379|ref|ZP_07944258.1| phage integrase [Bilophila wadsworthia 3_1_6]
 gi|316923338|gb|EFV44545.1| phage integrase [Bilophila wadsworthia 3_1_6]
          Length = 389

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 15/149 (10%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G+R+ E L +  Q++  +   + + GK  K R   +  +V   +     + P DL     
Sbjct: 234 GMRVGEVLRMRGQDVDFENRLIHVDGKMGK-RAAFMDDTVINVLQSIVPVRPADL----- 287

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGL------P-LSTTAHTLRHSFATHLLSNGGD 279
             +F   +G  + P        +    LGL      P      HTLRH+F + L S    
Sbjct: 288 --VFTTAKGLQIRPNALTHTFTKAVNILGLNDGITDPRFKVVIHTLRHTFCSWLASQNVP 345

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           L +I  ++GH  L +TQ Y  ++     D
Sbjct: 346 LYTIGKLVGHTSLRSTQRYAKLSPDAKWD 374


>gi|315223979|ref|ZP_07865823.1| integrase [Capnocytophaga ochracea F0287]
 gi|314946083|gb|EFS98088.1| integrase [Capnocytophaga ochracea F0287]
          Length = 411

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGDWMMEI 313
           H  RH+F T  L+ G  L S+  ++GH  + TTQIY  + N K   D  MEI
Sbjct: 351 HWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKD--MEI 400


>gi|239621464|ref|ZP_04664495.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239515925|gb|EEQ55792.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 391

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 112/271 (41%), Gaps = 34/271 (12%)

Query: 53  YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
           + E K   + I  +++ E++A++      K G  S+ R    ++       + K+ + SN
Sbjct: 96  HCEAKWAERQIGSITHAEVQAWVGSI-IDKSGAPSVSRPYQIMQGICSMAVRDKLIS-SN 153

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDN-VLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
             +   L +   LP+  + +  LT+     L + +   + +     A++ LL  CGLR  
Sbjct: 154 PCDGIELPR---LPKRKDRRIYLTITRLLALANEASNCRKLGEERRALILLLGFCGLRWG 210

Query: 172 EALSLTPQNIMDDQSTLRIQ--------------GKGDKIRIVPLLPSVRKAILEYYDLC 217
           EA  L  +++  D   L ++               K  + R VP+   V  A      L 
Sbjct: 211 EAAGLQRRDLDFDAGILHVRRNLVYVNAKWAEGTPKNHERRDVPMPRIVMDA------LK 264

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQR----YIRQLRRYLGLPLST--TAHTLRHSFAT 271
           P       +  +FR +RG P+      R    +   L R LG         H LRH+ A+
Sbjct: 265 PICEQREHEERVFRDVRGGPIRKQSLARETGWWTHTLTR-LGWKRDDWPVPHDLRHTAAS 323

Query: 272 HLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
             +  G +++++Q +LGH   S T  +Y ++
Sbjct: 324 LAVHAGANVKALQRMLGHKNASMTLDVYADL 354


>gi|213962954|ref|ZP_03391213.1| integrase [Capnocytophaga sputigena Capno]
 gi|213954295|gb|EEB65618.1| integrase [Capnocytophaga sputigena Capno]
          Length = 411

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGDWMMEI 313
           H  RH+F T  L+ G  L S+  ++GH  + TTQIY  + N K   D  MEI
Sbjct: 351 HWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKD--MEI 400


>gi|78184009|ref|YP_376444.1| site-specific recombinase XerD-like [Synechococcus sp. CC9902]
 gi|78168303|gb|ABB25400.1| Site-specific recombinase XerD-like [Synechococcus sp. CC9902]
          Length = 291

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 103/261 (39%), Gaps = 36/261 (13%)

Query: 63  IRQLSYTEIRAFISKRRTQ----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
           IR+L    ++ +I   R Q    +I  R+  R LS + +  ++  +   +  + I   RN
Sbjct: 42  IRELDPPMVQNWIDDLRGQVDAGEIKPRTFNRRLSVVSALFRWASEPSRSGVTGI--GRN 99

Query: 119 LKKSNSLPRALNEKQALTLVD-NVLLHTSHETKWIDARNSAILYLLYGC---GLRISEAL 174
                S      E +A++  D + LL     ++   ARN+    L+ G    G R+SE  
Sbjct: 100 PVPGKSHLVGGKEGKAMSEDDLSKLLGVVASSRDRSARNNRDFVLIRGSYLLGARVSEVA 159

Query: 175 SLTPQNI--MDDQSTLRIQGKGDKIRIV-------PLLPSVRKAILEYYDLCPFDLNLNI 225
            L   ++  + D   + + GKG K R V        L  S+ +A    Y           
Sbjct: 160 RLQWCDVEPLADGGQIHLLGKGSKARTVRVSADTLQLFESLGRAGESDY----------- 208

Query: 226 QLPLFRGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
              LF   R K  L        +R+     G+ +    H LRHS ATH +  G ++  +Q
Sbjct: 209 ---LFPSSRTKSHLTRQAINYTMRKWGEKAGVDVH--PHKLRHSHATHAIRRGTNVFCLQ 263

Query: 285 SILGHFRLSTTQIYTNVNSKN 305
             LGH    TT  Y   N  +
Sbjct: 264 HTLGHSSTDTTSGYVKQNPDD 284


>gi|29349429|ref|NP_812932.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341338|gb|AAO79126.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 403

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 67/153 (43%), Gaps = 20/153 (13%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVRKA 209
           AR + I   L   GL   +   L P +I    D +  +RI  K  K+   +PL P + + 
Sbjct: 240 ARRAFIFSTL--TGLAYVDIKLLHPHHIGTNADGRRYIRINRKKTKVEAFIPLHP-IAER 296

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           IL  Y+        + + P+F      PL N       + +L   +G   + T H  RHS
Sbjct: 297 ILSLYN------TTDDEKPVF------PLPNRDALWFEVHELGITIGKEENLTYHQSRHS 344

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           F T L+S    + SI  ++GH  + TTQ Y  +
Sbjct: 345 FGTFLISADIPIESIAKMMGHSNIRTTQGYARI 377


>gi|303255767|ref|ZP_07341809.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           BS455]
 gi|302597279|gb|EFL64383.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           BS455]
          Length = 356

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 99/255 (38%), Gaps = 43/255 (16%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--------PRALNEK 132
           Q +   ++ R+LS + S  KYL +     +      RN+ K  S          RA N K
Sbjct: 99  QGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIK 158

Query: 133 QALTLVDNVLLHTSHETKWID-------------------ARNSAILYLLYGCGLRISEA 173
           Q L L D     T     +ID                    R+ AI+ LL   G+R+SEA
Sbjct: 159 QKLFLGD----ETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEA 214

Query: 174 LSLTPQNI---MDDQSTLRIQGKGDKIRIV----PLLPSVRKAILEYYDLCPFDLNLNIQ 226
           ++L  +++   M      R  GK D + +     P L +      + Y     D  L   
Sbjct: 215 VNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKTDTALF-- 272

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           L L+RG+  + ++    ++ + +        +  T H LRH+ AT L         +   
Sbjct: 273 LTLYRGVPNR-IDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQ 329

Query: 287 LGHFRLSTTQIYTNV 301
           LGH     T +YT++
Sbjct: 330 LGHASTQVTDLYTHI 344


>gi|228471370|ref|ZP_04056171.1| integrase [Porphyromonas uenonis 60-3]
 gi|228306871|gb|EEK15984.1| integrase [Porphyromonas uenonis 60-3]
          Length = 388

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R+++ +    G+    T H  RH+F T  L  G  + SI  ++GH  +++TQIY  V  +
Sbjct: 318 RHLKAVGLACGIRTPLTWHCARHTFGTLTLEAGIPIESIAKMMGHSSIASTQIYAQVTDQ 377


>gi|226349701|ref|YP_002776815.1| putative integrase/recombinase [Rhodococcus opacus B4]
 gi|226349753|ref|YP_002776867.1| putative integrase/recombinase [Rhodococcus opacus B4]
 gi|226245616|dbj|BAH55963.1| putative integrase/recombinase [Rhodococcus opacus B4]
 gi|226245668|dbj|BAH56015.1| putative integrase/recombinase [Rhodococcus opacus B4]
          Length = 409

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 67/154 (43%), Gaps = 18/154 (11%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL--- 211
           R+ A++      G R SE LS T   +   +  + +  KG   R +  LP+   A +   
Sbjct: 215 RDRALIAFYVSTGARASELLSTTLAGVDPGRQLITVVRKG--TRELQELPASTDAFVWLR 272

Query: 212 ----EYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
               E  DL P       + PL+  +R   +PL      R   ++ +  G   S T H L
Sbjct: 273 LYQVEMADLIP----KGRRQPLWWTLRRPARPLTYHAVHRMFERVNQQAGT--SVTLHAL 326

Query: 266 RHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIY 298
           RH+    +  +    L  +Q +LGH +L+TTQIY
Sbjct: 327 RHTATYRMAEDPALPLTDVQFVLGHAQLTTTQIY 360


>gi|226366648|ref|YP_002784431.1| tyrosine recombinase [Rhodococcus opacus B4]
 gi|226245138|dbj|BAH55486.1| putative tyrosine recombinase [Rhodococcus opacus B4]
          Length = 310

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 56/119 (47%), Gaps = 6/119 (5%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY-YDL 216
           ++ LL+  G+RI E L L   ++  +Q+TL I   K  + RIV L  S  +A+  Y +D 
Sbjct: 136 LIGLLFVTGMRIGETLHLNVGDLDTEQNTLMIRHAKLGRERIVCLDNSTTEALRAYLHDP 195

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA----HTLRHSFAT 271
              DL      PLF    G  ++         QL R +GL     A    H LRHSFAT
Sbjct: 196 PRRDLGTGTDRPLFVTGTGTAVSYSTVCGGFGQLVRRVGLDHRAGARPRLHDLRHSFAT 254


>gi|239623222|ref|ZP_04666253.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522188|gb|EEQ62054.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 306

 Score = 40.8 bits (94), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 8/141 (5%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           ++  L   G R+SE + +  ++I      + +  KG K+R +     +   +L +  L  
Sbjct: 155 VVRFLGATGARVSELVQIKAEHIQ--IGCMDLYSKGGKVRRIYFPEKLCGEMLSWLALRG 212

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNG 277
                     +F   +G  + P      ++ L R+  + P +   H+ RH FA + LS  
Sbjct: 213 IRSGF-----VFTNRQGNQITPRGISSQLKVLARHYRISPDTVYPHSFRHRFAKNFLSKF 267

Query: 278 GDLRSIQSILGHFRLSTTQIY 298
            D+  +  ++GH  + TT+IY
Sbjct: 268 NDISLLADLMGHESIETTRIY 288


>gi|186473706|ref|YP_001861048.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184196038|gb|ACC74002.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 419

 Score = 40.8 bits (94), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 25/40 (62%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           H LR + AT L+  G  L+ +  +LGH  L+TT IYT V+
Sbjct: 364 HVLRRTAATRLIRGGASLKEVADVLGHRHLNTTTIYTGVD 403


>gi|317501469|ref|ZP_07959667.1| hypothetical protein HMPREF1026_01611 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331088059|ref|ZP_08336980.1| hypothetical protein HMPREF1025_00563 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316897098|gb|EFV19171.1| hypothetical protein HMPREF1026_01611 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330409015|gb|EGG88474.1| hypothetical protein HMPREF1025_00563 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 594

 Score = 40.8 bits (94), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 130/312 (41%), Gaps = 33/312 (10%)

Query: 4   NNLPEIVSFELLKERQN---WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           +N+   V+F+ ++  QN   + + ++   GLS L+L S   +      FLA+Y E     
Sbjct: 254 SNMVRTVTFQTVRHLQNRRLFQEYMKYGIGLSTLSLSSLREEAHYIQSFLAYYNE--TEF 311

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           +  R+L+   I  F      +K+   +  R +  +  F +YL  R             LK
Sbjct: 312 EDARKLTGENIDRFFKYIGEKKLHPNTFNRYVKAVDHFYQYLLTRYQVKRIPFHKEYYLK 371

Query: 121 KS--NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL-LYGCGLRISEALSLT 177
                   R+++E  +  ++ N+           D R   ++YL L+  G+RISE  ++ 
Sbjct: 372 TEIYRHHDRSVDEVISKEILKNLQYFPE------DIR---LMYLHLWAVGMRISEVCTIK 422

Query: 178 PQNI--MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFR 231
            +     DD   ++I Q K    + +P +P V   +++ Y      +    + P   +F+
Sbjct: 423 AKEYYRQDDDYWMQIYQVKMRNYKRIP-IPEVLYRLMQVY------IKKKRRKPEDYVFQ 475

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLST---TAHTLRHSFATHLLSNGGDLRSIQSILG 288
             +G       F+  +++L     +   T    AH  RH+ AT     G  L+S++  LG
Sbjct: 476 NKKGGAFCSSTFRERMKKLCETYQIGDGTYIFQAHGYRHTLATVFYDEGVPLQSVRDYLG 535

Query: 289 HFRLSTTQIYTN 300
           H     TQ Y +
Sbjct: 536 HAYEEMTQQYID 547


>gi|168184262|ref|ZP_02618926.1| XerC/D integrase-recombinase protein [Clostridium botulinum Bf]
 gi|182672603|gb|EDT84564.1| XerC/D integrase-recombinase protein [Clostridium botulinum Bf]
          Length = 320

 Score = 40.8 bits (94), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 51/244 (20%), Positives = 103/244 (42%), Gaps = 20/244 (8%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           I++L+  +I   I   R +     + +  +  I++FL Y       T+  +         
Sbjct: 59  IKELTKEKIEKHIINMRKEGYKGNTYQTYIIKIRAFLSYCFNNNYLTKFTV--------- 109

Query: 123 NSLPRALNEKQALTLVDNV--LLHTSHETKWI--DARNSAILYLLYGCGLRISEALSLTP 178
             +P  L EK+ +   + V  LL   +    +  D R+ AI   L   G R    L++  
Sbjct: 110 -KIPNVLLEKKEVYTEEEVIKLLKKPNINTCLVGDFRSWAICSFLLSTGCRAETLLNVHV 168

Query: 179 QNIMDDQSTLRIQGKGDKIRI-VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
           +++     ++  +    K +I VPL  +++  ++EY       + L  +  LF  + G+ 
Sbjct: 169 EDVNFSTDSILFRHMKTKRQITVPLSNTLKVNLMEYIQ----RMGLKQEDYLFPLLNGEK 224

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +      + ++   ++  +      +T R++FAT  L NG  +  +Q  LGH  +  T+ 
Sbjct: 225 MKYDTCHQNLKNYFKHRNVKFHG-VNTFRNTFATMALKNGAGIYLVQKCLGHADIKMTER 283

Query: 298 YTNV 301
           Y N+
Sbjct: 284 YINL 287


>gi|58698750|ref|ZP_00373634.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58534723|gb|EAL58838.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Drosophila ananassae]
          Length = 42

 Score = 40.8 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/29 (55%), Positives = 23/29 (79%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           + H +RHSFATHLL++G ++  IQ +LGH
Sbjct: 13  SPHVIRHSFATHLLNSGANIVLIQKVLGH 41


>gi|329314680|gb|AEB89093.1| Phage integrase [Staphylococcus aureus subsp. aureus T0131]
          Length = 345

 Score = 40.8 bits (94), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 73/148 (49%), Gaps = 5/148 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+S  L+++   G R+S A ++  ++I   ++T+ I  +  K    P   S+ K+ +++ 
Sbjct: 183 RSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDER--KTDTSPRYISIAKSDMKHI 240

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                   ++    +F+   G  +N       ++   R   +P+  T+H LRH+  ++LL
Sbjct: 241 MDVISTFAISYDGYIFKEA-GSIINLHAINNALKSACRVNNIPI-ITSHALRHTHCSYLL 298

Query: 275 SNGGDLRSIQSILGHFRLS-TTQIYTNV 301
           + G  +  I   LGH  ++ TT +Y+++
Sbjct: 299 AKGVSIHYISKRLGHKNIAITTSMYSHL 326


>gi|319936315|ref|ZP_08010731.1| phage integrase family Site-specific recombinase [Coprobacillus sp.
           29_1]
 gi|319808430|gb|EFW04982.1| phage integrase family Site-specific recombinase [Coprobacillus sp.
           29_1]
          Length = 398

 Score = 40.8 bits (94), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 68/160 (42%), Gaps = 18/160 (11%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRI------QGKGDKIRIVPLL-PSVRKAILE 212
           L+LL+  GLRI EA +L  ++I  +   L +      +   D   + P    SVR+ +L+
Sbjct: 199 LWLLFMAGLRIGEASALQWKDIDFETGVLSVTKNLYYKSCNDYKFVEPKTKASVRQIVLD 258

Query: 213 YYDLCPFDLNLNIQLPLFR-----GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
              L    L  + Q  + +        G P N     R I +L     +      H LRH
Sbjct: 259 EDTLEQLQLWKSAQQKIIKTDFLLSYNGTPTNKHSLPRAIEKLSEMANIH-RIKVHALRH 317

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTT-----QIYTNVN 302
           S A+ L+S G +   I+  LGH  + TT      +Y N N
Sbjct: 318 SHASLLISMGENPLIIKDRLGHEDIETTLGTYGHLYPNSN 357


>gi|297618535|ref|YP_003706640.1| integrase family protein [Methanococcus voltae A3]
 gi|297377512|gb|ADI35667.1| integrase family protein [Methanococcus voltae A3]
          Length = 220

 Score = 40.8 bits (94), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 10/141 (7%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS-VRKAILEYYDLCPFD 220
           +LYG  LR+SE L +  Q++   +   ++         V L+P  +   I EY  L   D
Sbjct: 71  MLYGMALRVSELLKIKVQDLQLKEGVCKLWDTKTDYFQVCLIPDWLINDIKEYIALKSLD 130

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
            +      LF     K  N        ++  +   L    + HT R S A HLL++G  L
Sbjct: 131 SSQ----ELF-----KFNNRKYVWELAKKYSKMAELDKDISTHTFRRSRALHLLNDGVPL 181

Query: 281 RSIQSILGHFRLSTTQIYTNV 301
             +   L H  + TT  Y  +
Sbjct: 182 EKVSKYLRHKSIGTTMSYIRI 202


>gi|288561496|ref|YP_003428902.1| transposition regulatory protein TnpB [Bacillus pseudofirmus OF4]
 gi|288548128|gb|ADC52010.1| transposition regulatory protein TnpB [Bacillus pseudofirmus OF4]
          Length = 696

 Score = 40.8 bits (94), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 42/190 (22%)

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D+VL        ++      I+++ +  GLR+S+ L LT   +      LRI GK     
Sbjct: 357 DSVLQQLFDNINYLHEEVQPIIWISFKTGLRVSDTLRLTQDCL------LRIDGK----- 405

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIR---GKPLNPG--VFQRY--IRQL 250
              L+  V K  L+ + + P D  L ++   L +  +    +  NP   +F RY  +R+ 
Sbjct: 406 -YQLISDVTKTCLKDHSI-PIDDELADVIAVLIKNSKENSNEENNPQNYIFVRYRGVRKG 463

Query: 251 RRY----LGLPLSTTA-----------------HTLRHSFATHLLSNGGDLRSIQSILGH 289
           R Y    +G  L++ A                 H  RH++A  +L++G D  ++Q +L H
Sbjct: 464 RPYSADWIGERLNSLAKEKKIVDEKGEIYHFRMHQFRHTYAVKMLNSGADFFTVQQLLAH 523

Query: 290 FRLSTTQIYT 299
                T +Y 
Sbjct: 524 SSPEMTLVYA 533


>gi|253570271|ref|ZP_04847680.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840652|gb|EES68734.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 414

 Score = 40.8 bits (94), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 19/153 (12%)

Query: 161 YLLYGCGLRISEALSLTPQNI----MDDQSTLRIQ----GKGDKIRIVPLLPSVRKAILE 212
           YL +G    I EA+ LT  NI     ++    + Q     K  K   +P+ P++R+  LE
Sbjct: 250 YLCFGMSF-IDEAM-LTKNNIDTFGTEEHIVYKRQKTQNAKNAKPITIPVTPAIREQ-LE 306

Query: 213 YYDLCPFDLNLNIQLPLF-RGIRGKPLNPGVFQRY------IRQLRRYLGLPLSTTAHTL 265
           ++      L  N  LP+  R   G+ L   +  RY      ++QL + L + ++ T +  
Sbjct: 307 WFK-ANTALTGNYLLPIITRDYEGEQLYDHIRSRYKRINDGLKQLGKLLRIRMNLTTYVS 365

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           RH+ A  L  N      I   LGH  L+TT +Y
Sbjct: 366 RHTMAMTLQGNDVPREIISQALGHRNLTTTNVY 398


>gi|210617226|ref|ZP_03291470.1| hypothetical protein CLONEX_03692 [Clostridium nexile DSM 1787]
 gi|210149427|gb|EEA80436.1| hypothetical protein CLONEX_03692 [Clostridium nexile DSM 1787]
          Length = 409

 Score = 40.8 bits (94), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 95/222 (42%), Gaps = 61/222 (27%)

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILY--------LLYGCGLRISEALSLTPQNI- 181
           EK+ALT+        S + K+++    + +Y        ++ G GLR  E + LT ++I 
Sbjct: 178 EKEALTV--------SQQEKFMEFVKQSNVYNTYYPMFTIMIGTGLRCGELIGLTWKDIN 229

Query: 182 -------MDDQSTLRIQGKGDK-----------IRIVPLLPSVRKAILEYYDLCPFDL-- 221
                  +D Q   +  G G K           IRI+P    V KA  E   +  F L  
Sbjct: 230 IKAKTVNVDHQLIYKNLGDGCKFHISTPKTESGIRIIPTTQEVAKAFEEQRKI-NFMLAK 288

Query: 222 NLNIQLPLFRGI-----RGKPLNP-GV---------------FQRYIRQLRRYLGLPLST 260
           + +I++  + G       G+PL P GV                +R  ++ R+   LP   
Sbjct: 289 DKSIEVDGYSGFVFTAKSGRPLMPNGVNSVLYNIVDAYNKTEVERAKKEHRKAELLP-KF 347

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           +AH +RH+  T +     D++ +Q I+GH  +  T ++Y ++
Sbjct: 348 SAHVMRHTACTRMAECRMDVKVLQYIMGHAHIDVTMEVYNHI 389


>gi|56460732|ref|YP_156013.1| XerC/XerD family integrase/recombinase [Idiomarina loihiensis L2TR]
 gi|56179742|gb|AAV82464.1| Integrase/recombinase, XerC/XerD family [Idiomarina loihiensis
           L2TR]
          Length = 186

 Score = 40.8 bits (94), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 5/141 (3%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--N 224
            LRIS+ LS+  +NI D++ TL ++GK  K   + L    R  I    +  P  + L  +
Sbjct: 39  ALRISDLLSIKFENIHDERLTL-VEGKTSKQATIKLNDKARSIIGRIKEEHPEHIYLFQS 97

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
            +    +G+   P++     R    +   +G+ L T  H++R +   HL  N  D+  + 
Sbjct: 98  YRNQWSKGLDEAPISRRYVSRAFAAIGEEVGIKLGT--HSMRKTRGYHLYKNTNDIARVM 155

Query: 285 SILGHFRLSTTQIYTNVNSKN 305
            +L H   + T  Y  +  ++
Sbjct: 156 KMLRHSSEAVTLRYIGITQED 176


>gi|119715959|ref|YP_922924.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119536620|gb|ABL81237.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 378

 Score = 40.8 bits (94), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 21/141 (14%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------------GKGDKIRIVPLLPSVRK 208
           +L G GLR+ E L L   ++   + ++R++              K  + R VP+   V  
Sbjct: 199 VLAGSGLRVGELLGLRLSDVDFLRRSIRVERQRLQTNQIAPLKSKASRRR-VPVGQVVID 257

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           A+  +    P       +  LF    GKPL    ++R +    +  G  +  T+H+ RH 
Sbjct: 258 ALAAHLASYP-----PTEEALFTDEFGKPLTYRRWKRLVSDAAKVAGAEI--TSHSFRHF 310

Query: 269 FATHLLSNGGDLRSIQSILGH 289
            A+ L+S G  ++ +Q+ LGH
Sbjct: 311 AASALISGGASVKQVQAFLGH 331


>gi|331699799|ref|YP_004336038.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326954488|gb|AEA28185.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
          Length = 827

 Score = 40.8 bits (94), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 73/188 (38%), Gaps = 56/188 (29%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLR----------------IQGKGDKIRIVP 201
           AI+  L   G+RI E L LT       Q +LR                +  K D  R++P
Sbjct: 530 AIVETLRHSGIRIEELLELT-------QLSLRHYTPATTNTLVPLLHIVPSKTDAERLIP 582

Query: 202 LLPSVRKAILEY-------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR--------- 245
           + P +   +L          D  P    L+++        G+PL P +F R         
Sbjct: 583 ISPELVTVLLAVQRRAKNGADQVP----LSVRYDPHEKTHGEPL-PHLFARRLGTRQEVI 637

Query: 246 ---YIRQL----RRYLGL-----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
              Y+R L      + GL     P+  T H  R  F T L+ +G  L    S+LGH  L 
Sbjct: 638 SPFYVRTLLGGTAAWAGLRDADGPVHFTPHDFRRLFTTELVGSGLPLHIAASLLGHLSLD 697

Query: 294 TTQIYTNV 301
           TT+ YT V
Sbjct: 698 TTRGYTAV 705


>gi|315223379|ref|ZP_07865237.1| integrase [Capnocytophaga ochracea F0287]
 gi|314946654|gb|EFS98644.1| integrase [Capnocytophaga ochracea F0287]
          Length = 411

 Score = 40.8 bits (94), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGDWMMEI 313
           H  RH+F T  L+ G  L S+  ++GH  + TTQIY  + N K   D  MEI
Sbjct: 351 HWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKD--MEI 400


>gi|297172634|gb|ADI23603.1| hypothetical protein [uncultured nuHF2 cluster bacterium
           HF0770_42C12]
          Length = 438

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 48/112 (42%), Gaps = 20/112 (17%)

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR---YL 254
           R VPL P   KA+ EY+   P  + +  +  LF      P   G    YI   R    Y 
Sbjct: 289 RTVPLDPDFSKALKEYWMAMP--VKMKAEGWLF------PTEKGTLS-YINNWRNRILYK 339

Query: 255 GLPLS-------TTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIY 298
              L+        T   LRH++AT  L+  GGD      ++GH  +STT +Y
Sbjct: 340 ACDLAGLSKDERPTWRGLRHAYATAYLNKRGGDFTRAMELMGHADMSTTLMY 391


>gi|308173835|ref|YP_003920540.1| hypothetical protein BAMF_1944 [Bacillus amyloliquefaciens DSM 7]
 gi|307606699|emb|CBI43070.1| RBAM018520 [Bacillus amyloliquefaciens DSM 7]
 gi|328553236|gb|AEB23728.1| hypothetical protein BAMTA208_07775 [Bacillus amyloliquefaciens
           TA208]
 gi|328911978|gb|AEB63574.1| putative integrase/recombinase yoeC [Bacillus amyloliquefaciens
           LL3]
          Length = 181

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 12/147 (8%)

Query: 161 YLLYGCG----LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           Y L+  G    LRIS+ L L  +++ +       + K  K R + +L S++       D+
Sbjct: 28  YFLFIFGMNSALRISDVLPLRVRDVRNKDHVWATESKTRKKRKILILESLKA------DI 81

Query: 217 CPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
             +  ++     LF+  R  KP++     R +++     GL    T HTLR +F  H   
Sbjct: 82  YAYTKDMKENDYLFKSKRTNKPISRIQAYRILKEAAAACGLEEIGT-HTLRKTFGYHFYQ 140

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVN 302
              D+  +Q IL H   S T  Y  ++
Sbjct: 141 RTKDIAELQRILNHSSPSITMRYIGID 167


>gi|295115591|emb|CBL36438.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1]
          Length = 219

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
           R  ++ R  + LP + + H LRH+F T L  N  +L+ IQSI+GH  + TT  IY     
Sbjct: 144 RAKKEHRDPIILP-NFSCHHLRHTFCTRLCENETNLKVIQSIMGHKNIETTLDIYAEATE 202

Query: 304 K 304
           K
Sbjct: 203 K 203


>gi|224024181|ref|ZP_03642547.1| hypothetical protein BACCOPRO_00904 [Bacteroides coprophilus DSM
           18228]
 gi|224017403|gb|EEF75415.1| hypothetical protein BACCOPRO_00904 [Bacteroides coprophilus DSM
           18228]
          Length = 319

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYT 299
           G   + ++ + R  G  +  T H  RH+ AT  LLS+G  + ++  +LGH  + TTQIY 
Sbjct: 240 GSCNKILKDIGRQCGFKVRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDIKTTQIYA 299

Query: 300 NVNSK 304
            + ++
Sbjct: 300 KITAQ 304


>gi|188024479|ref|ZP_02997125.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188018594|gb|EDU56634.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
          Length = 255

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 120/297 (40%), Gaps = 68/297 (22%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +LQ+++ +R LSK T  +YE   R+F +      +E+   Q I+QL     +        
Sbjct: 5   FLQSIK-KRNLSKNTYLTYESHLRKFKV------QEQSFKQIIKQLLNNNYKP------- 50

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                +SLK + S +  + K+ K+ +   E   + +   +KS     +L++      +  
Sbjct: 51  -----KSLKLAKSILSEYWKFTKQYQYVQELEQIKLSKEQKSYKKVFSLDD------IKK 99

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            L     +TK I    + +L+     G+R  E   L   N         I GKG+K R  
Sbjct: 100 CLKINKQDTKQIKFYKTILLFYA-TTGIRAMEIYQLKQIN----NDLFVISGKGNKNR-- 152

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-- 258
                          +C  +        L+  I+ K L P       + LR+YL +    
Sbjct: 153 --------------QICYIE-------HLWNNIKNKKL-PST-----KTLRKYLKVFFDN 185

Query: 259 -STTAHTLRHSFATHLLSN------GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            + + HTLR SF T+ L++      G  L+ +Q ++GH  + TT  Y  +  +   D
Sbjct: 186 KNVSLHTLRRSFITNFLTSNDNYKRGDMLKIVQDLVGHENIQTTLQYVQITKEQVDD 242


>gi|66395896|ref|YP_240263.1| ORF011 [Staphylococcus phage 96]
 gi|62636317|gb|AAX91428.1| ORF011 [Staphylococcus phage 96]
          Length = 349

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 128/299 (42%), Gaps = 33/299 (11%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           +GNNL E   FE  +   +WL +    +    +  Q +    R   +F  ++  +   I+
Sbjct: 55  DGNNLDENKKFE--EYYNDWLDS----KNKKHVASQQFYWYQRSLKLFNEYFGSD-FLIK 107

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI---KSFLKYLKKRKITTESNILNMRN 118
            I++  Y +      + RT +   R L   LS       +  YLKK      S  +++R 
Sbjct: 108 NIKRSEYQKFLNEFGRGRTNETV-RKLNSCLSQCFRDAVYEGYLKK----DPSYQIDIRG 162

Query: 119 LKKS-NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
            KKS +   + +  +Q L L++     +  E+ +I       L++L   G R S+ +++ 
Sbjct: 163 TKKSKDEHSKFITIEQYLQLIE--YFKSRDESSYI------FLFILAITGARYSDVINML 214

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
           P ++ + + T+ +  +G K      L  V K  +++       L       LF+      
Sbjct: 215 PIDLNEKEGTIHL--RGTKTVNADRLVEVPKKDIQHIKAKLSKLPKRTDNKLFK------ 266

Query: 238 LNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           L+    ++     +  +GL  +T T ++LRH+  + LLS G  +  I   LGH+ +S T
Sbjct: 267 LSHNAVKKSFNHAKSQIGLNDTTITPYSLRHTHTSFLLSKGIPIEYISKRLGHYNISIT 325


>gi|322417793|ref|YP_004197016.1| integrase family protein [Geobacter sp. M18]
 gi|320124180|gb|ADW11740.1| integrase family protein [Geobacter sp. M18]
          Length = 402

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 13/157 (8%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           D  + A + +L   G R  E LSL    + +D+   L +  K  + R+V L    +  + 
Sbjct: 233 DGLSVAAIRMLLFTGCRRGEVLSLKWNEVRLDEDCILLLDTKNGRSRMVHLNARAKAVVE 292

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA------HTL 265
           E ++    ++       +F      P   G  + ++  LR+                H L
Sbjct: 293 ELHENRDKEVRTAASEYVF------PSRQGTKKGHLFDLRKPFEKACQRAGVENFRIHDL 346

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           RH+FA+  +  G  L  +Q +LGH  ++ TQ Y +++
Sbjct: 347 RHTFASMAVRGGASLFDVQKLLGHQDIAMTQRYAHLS 383


>gi|241895008|ref|ZP_04782304.1| integrase family protein [Weissella paramesenteroides ATCC 33313]
 gi|241871726|gb|EER75477.1| integrase family protein [Weissella paramesenteroides ATCC 33313]
          Length = 383

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 81/168 (48%), Gaps = 23/168 (13%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK-------------GDKIRIVP-- 201
           + ++ ++   G+R+SEA+ L   ++ + + TLR+                 +  R +P  
Sbjct: 197 TMVILVILCTGMRVSEAIDLRQDDLDEIKLTLRVDSSYSRTVHDSKAPKTKNSYRTIPIP 256

Query: 202 --LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG-LPL 258
             LL  +R+   E   L   + + N +  LF    G   +      Y+++L   +  +P+
Sbjct: 257 KFLLQRLREWRFEQNRLLMLNGHRNHEQHLFITKFGNVPDASSVNYYVQKLEHTICQIPV 316

Query: 259 --STTAHTLRHSFATHLLSNGGDLRSIQ---SILGHFRLSTTQIYTNV 301
             +T+ H+LRH++A++LLS  G  +S+Q   ++LG  +    ++Y ++
Sbjct: 317 GQTTSTHSLRHTYASYLLSREGGNQSLQYVANVLGDTQAMVQEVYAHL 364


>gi|158340058|ref|YP_001521228.1| phage integrase family protein [Acaryochloris marina MBIC11017]
 gi|158310299|gb|ABW31914.1| phage integrase family protein [Acaryochloris marina MBIC11017]
          Length = 324

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 99/229 (43%), Gaps = 21/229 (9%)

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD-- 139
           ++ + ++ R LS ++S + Y ++    T      + ++K    +  A  +   + L D  
Sbjct: 85  ELAEATVNRRLSALRSLVSYARRAGQCT----WGLEDIKGEKVI--AYRDTSGVDLEDFQ 138

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG---DK 196
            +L     ET+ +  R+ AIL LL+   LR  E       +   ++  L IQGKG    K
Sbjct: 139 KMLAIPDRETQ-LGKRDYAILALLWETALRRGELNRCNVGDWEPEEKALWIQGKGRGTQK 197

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR----GKPLNPGVFQRYIRQLRR 252
            R+   + +V    LE  D      +L    PL   +     G+ L+     + +R +  
Sbjct: 198 ERVT--VGNVSAIALE--DWLSTRKHLEDDDPLIVALDIVHWGQRLSTTSIYKVVRNIAT 253

Query: 253 YLGLPLSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLSTTQIYTN 300
             G+    + H +RHS  T  L + GG++R++Q +  H +  T   Y +
Sbjct: 254 KAGISKVMSPHRVRHSSITAALDATGGNVRAVQQLSRHAKPETVMRYDD 302


>gi|154686284|ref|YP_001421445.1| phage integrase family site specific recombinase [Bacillus
           amyloliquefaciens FZB42]
 gi|154352135|gb|ABS74214.1| site-specific recombinase (phage integrase family) [Bacillus
           amyloliquefaciens FZB42]
          Length = 181

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 12/147 (8%)

Query: 161 YLLYGCG----LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           Y L+  G    LRIS+ L L  +++ +       + K  K R + +L S++       D+
Sbjct: 28  YFLFIFGMNSALRISDVLPLRVRDVRNKDHVWATESKTRKKRKILILESLKA------DI 81

Query: 217 CPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
             +  ++     LF+  R  KP++     R +++     GL    T HTLR +F  H   
Sbjct: 82  YAYTKDMKEDDYLFKSKRTNKPISRIQAYRILKEAAAACGLEEIGT-HTLRKTFGYHFYQ 140

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVN 302
              D+  +Q IL H   S T  Y  ++
Sbjct: 141 RTKDIAELQRILNHSSPSITMRYIGID 167


>gi|153814731|ref|ZP_01967399.1| hypothetical protein RUMTOR_00946 [Ruminococcus torques ATCC 27756]
 gi|154502994|ref|ZP_02040054.1| hypothetical protein RUMGNA_00816 [Ruminococcus gnavus ATCC 29149]
 gi|145847762|gb|EDK24680.1| hypothetical protein RUMTOR_00946 [Ruminococcus torques ATCC 27756]
 gi|153796348|gb|EDN78768.1| hypothetical protein RUMGNA_00816 [Ruminococcus gnavus ATCC 29149]
          Length = 431

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
           H LRH++ ++LLSNG   + +Q +LGH  +STT  IY +   K   D
Sbjct: 373 HQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTTMNIYAHSTRKAKRD 419


>gi|326407821|gb|ADZ64892.1| integrase [Lactococcus lactis subsp. lactis CV56]
          Length = 378

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 22/182 (12%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI------QGKGDKIRIVPLLP-- 204
           D R   I   L+  GLRI E  +L  +++  ++ TL +      QG  +K R + L P  
Sbjct: 196 DIRKLLIYEFLFLTGLRIGEVQALRWEDVDFEKKTLAVTHTLNHQGTSEKNRQL-LSPKT 254

Query: 205 -------SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
                  S+    LE   L  F  +L  +L +F    G      +  R+ +++ + LG  
Sbjct: 255 INSYRTISINDRCLEI--LNYFYSHLTDELFIFVNKHGDTYCYSILARHFKKVCQVLGEE 312

Query: 258 LST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
            S    T H LRHS  + L+  G  +++I   +GH       QIY++V  K   D   ++
Sbjct: 313 TSQRKYTLHMLRHSHISLLIEIGIPIKTIMERVGHSNEQMILQIYSHVTKKMEEDLANKL 372

Query: 314 YD 315
            D
Sbjct: 373 KD 374


>gi|295107720|emb|CBL21673.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 431

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
           H LRH++ ++LLSNG   + +Q +LGH  +STT  IY +   K   D
Sbjct: 373 HQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTTMNIYAHSTRKAKRD 419


>gi|258425113|ref|ZP_05687983.1| phage integrase [Staphylococcus aureus A9635]
 gi|257844696|gb|EEV68740.1| phage integrase [Staphylococcus aureus A9635]
          Length = 344

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 73/148 (49%), Gaps = 5/148 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+S  L+++   G R+S A ++  ++I   ++T+ I  +  K    P   S+ K+ +++ 
Sbjct: 191 RSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDER--KTNTSPRYISIAKSDMKHI 248

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                   ++    +F+   G  +N       ++   R   +P+  T+H LRH+  ++LL
Sbjct: 249 MDVISTFAISYDGYIFKE-GGSIINLHAINNALKSACRVNNIPI-ITSHALRHTHCSYLL 306

Query: 275 SNGGDLRSIQSILGHFRLS-TTQIYTNV 301
           + G  +  I   LGH  ++ TT +Y+++
Sbjct: 307 AKGVSIHYISKRLGHKNIAITTSVYSHL 334


>gi|256818992|ref|YP_003140271.1| integrase family protein [Capnocytophaga ochracea DSM 7271]
 gi|256580575|gb|ACU91710.1| integrase family protein [Capnocytophaga ochracea DSM 7271]
          Length = 411

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGDWMMEI 313
           H  RH+F T  L+ G  L S+  ++GH  + TTQIY  + N K   D  MEI
Sbjct: 351 HWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKD--MEI 400


>gi|323340761|ref|ZP_08081013.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644]
 gi|323091884|gb|EFZ34504.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644]
          Length = 305

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 13/147 (8%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD------KIRIVPLLPSVRKAILE 212
           I+ L+   GLR  EAL LT  +I  +Q  + +    D        +      SVRK  ++
Sbjct: 138 IILLIAKTGLRFGEALGLTKDDIDFEQQIITVNKTWDYKSCSGGFKPTKNASSVRKVSID 197

Query: 213 Y---YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +     L      L    P+F  I+ +  N  V    +++    L +P+  + H LRH+ 
Sbjct: 198 WKLAMQLSSMVNELPSDQPIF--IQKRIFNSTV-NSLLKKHCEKLEIPV-ISIHGLRHTH 253

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 254 ASLLLFAGVSVASVAKRLGHADMTTTQ 280


>gi|153813073|ref|ZP_01965741.1| hypothetical protein RUMOBE_03481 [Ruminococcus obeum ATCC 29174]
 gi|317501373|ref|ZP_07959575.1| phage integrase family Site-specific recombinase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|149830875|gb|EDM85965.1| hypothetical protein RUMOBE_03481 [Ruminococcus obeum ATCC 29174]
 gi|316897237|gb|EFV19306.1| phage integrase family Site-specific recombinase [Lachnospiraceae
           bacterium 8_1_57FAA]
          Length = 431

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
           H LRH++ ++LLSNG   + +Q +LGH  +STT  IY +   K   D
Sbjct: 373 HQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTTMNIYAHSTRKAKRD 419


>gi|323650958|ref|YP_004243601.1| putative phage integrase [Bacillus subtilis subsp. natto]
 gi|323461598|dbj|BAJ77014.1| putative phage integrase [Bacillus subtilis subsp. natto]
          Length = 187

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 13/162 (8%)

Query: 161 YLLYGCG----LRISEALSLTPQNIMDDQSTLRI----QGKGDKIRIVPLLPSVRKAILE 212
           YL++  G    LRIS+ L L   +I D +         + K  K +  P+  +++KAI E
Sbjct: 28  YLMFMVGISSALRISDILKLKVGDIWDGRKPKEFIYLHEEKTGKYKRFPITENLQKAIRE 87

Query: 213 YYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           Y      +  L+ +  LF   +G KP++       +     Y+G+    + H++R ++  
Sbjct: 88  YMK----EYQLDQESYLFFSRKGNKPISRQQAAHILSSAADYIGIKEPVSTHSMRKTWGY 143

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                G  L  I   L H  ++ T+ Y  +  ++  D  M +
Sbjct: 144 WAYKKGYSLALIMEALNHSSIAITKKYLGITQEDLDDVYMSM 185


>gi|308271817|emb|CBX28425.1| hypothetical protein N47_G37490 [uncultured Desulfobacterium sp.]
          Length = 392

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 54/257 (21%), Positives = 106/257 (41%), Gaps = 32/257 (12%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK- 121
           + QL   ++  + +KR+ Q   D  + + ++  ++ +       I +   I   + +KK 
Sbjct: 128 VNQLKPADLENYQAKRKAQGQADAYVDQQIAMARAMINKAFDNDIVSGDTIKVFKRVKKL 187

Query: 122 ----SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
               SN+  R L+ ++   L++ +  H             AI+   Y  G+R  E ++LT
Sbjct: 188 LKGSSNTRDRVLSAEEFDKLMNALPSHAK-----------AIVATGYYGGMRKGEVVNLT 236

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
              +      +R+     K R    +P +  A+ +  +  P  +N N  + LF+G   KP
Sbjct: 237 WDKVDMKGRVIRLGANDTKDREARQVP-ICDALYDILEEIPRAINDN-HVFLFKG---KP 291

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTA------HTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           +     +  +R+  R  G+P           H  RH F T++  +G     I  I GH  
Sbjct: 292 IKN--LRTALRKACRVAGIPYGRGTKDGFVFHDTRHCFNTNMRKSGVPESVIMKITGH-- 347

Query: 292 LSTTQIYTNVNSKNGGD 308
            ST +++   ++ +  D
Sbjct: 348 -STREMFLRYDTVDATD 363


>gi|15901024|ref|NP_345628.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           TIGR4]
 gi|111658302|ref|ZP_01408992.1| hypothetical protein SpneT_02000531 [Streptococcus pneumoniae
           TIGR4]
 gi|34222992|sp|Q97QP2|XERS_STRPN RecName: Full=Tyrosine recombinase xerS
 gi|14972638|gb|AAK75268.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae TIGR4]
          Length = 356

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 103/271 (38%), Gaps = 58/271 (21%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--------PRALNEK 132
           Q +   ++ R+LS + S  KYL +     +      RN+ K  S          RA N K
Sbjct: 99  QGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIK 158

Query: 133 QALTLVDNVLLHTSHETKWID-------------------ARNSAILYLLYGCGLRISEA 173
           Q L L D     T     +ID                    R+ AI+ LL   G+R+SEA
Sbjct: 159 QKLFLGD----ETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEA 214

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-------------DLCPFD 220
           ++L  +++      + +  KG K   V +  +  K  LE Y             D   F 
Sbjct: 215 VNLDLRDLNLKMMVIDVTRKGCKRDSVNV-AAFAKPYLENYLAIRNQRYKTEKTDTALF- 272

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
                 L L+RG+  + ++    ++ + +        +  T H LRH+ AT L       
Sbjct: 273 ------LTLYRGVPNR-IDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQ 323

Query: 281 RSIQSILGHFRLSTTQIYTNVNS---KNGGD 308
             +   LGH     T +YT++ S   KN  D
Sbjct: 324 VLVSHQLGHASTQVTDLYTHIVSDEQKNALD 354


>gi|326335397|ref|ZP_08201585.1| integrase [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325692462|gb|EGD34413.1| integrase [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 411

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGDWMMEI 313
           H  RH+F T  L+ G  L S+  ++GH  + TTQIY  + N K   D  MEI
Sbjct: 351 HWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKD--MEI 400


>gi|6465906|gb|AAF12706.1|AF066865_4 integrase [Lactococcus phage TPW22]
          Length = 355

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 45/158 (28%)

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD--------------KIRIVPL---- 202
           YL    G+R +E L LT  ++  D+  + IQ   D                R +P+    
Sbjct: 194 YLTAVTGMRFAELLGLTWSHVDFDKKEISIQRTWDYSITNNFAETKNESSKRKIPISSKT 253

Query: 203 LPSVRKAILEY-----YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +  ++K   EY     YD   ++L+ N      + I G+ ++P                 
Sbjct: 254 IKLLKKYKKEYWHENKYDRVIYNLSNNGLNKTIKVIAGRKVHP----------------- 296

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                H+LRHSFA++L+  G DL ++  +LGH  L+ T
Sbjct: 297 -----HSLRHSFASYLIYKGIDLLTVSKLLGHENLNVT 329


>gi|260593259|ref|ZP_05858717.1| integrase [Prevotella veroralis F0319]
 gi|260534816|gb|EEX17433.1| integrase [Prevotella veroralis F0319]
          Length = 414

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 24/40 (60%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           H  RH+F T  LS G  + SI  ++GH  +S+TQIY  V 
Sbjct: 350 HMARHTFGTLSLSAGIPIESIAKMMGHASISSTQIYAQVT 389


>gi|257091155|ref|ZP_05585516.1| predicted protein [Enterococcus faecalis CH188]
 gi|312902620|ref|ZP_07761825.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|256999967|gb|EEU86487.1| predicted protein [Enterococcus faecalis CH188]
 gi|310633958|gb|EFQ17241.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|315163287|gb|EFU07304.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0645]
 gi|315578979|gb|EFU91170.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0630]
          Length = 372

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 12/145 (8%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQS------TLRIQGKGDKIRIVPLL-PSVRKAILEYY 214
            L+  GLR+ EAL+L  +++  D        T+ ++ K +     P    S+R   L+  
Sbjct: 205 FLFMTGLRLGEALALNWEDVDFDSKVVYINKTMLVKNKREFRTTTPKTKSSIRTVSLDDE 264

Query: 215 DLCPFDLNLNIQLPL----FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            L  F++    Q PL       I G  L       +++++     +P+    H LRHS A
Sbjct: 265 TLRLFEIWREQQSPLKINLIFSIDGGTLAKSTTHGWLKKICDLADVPV-IKIHALRHSHA 323

Query: 271 THLLSNGGDLRSIQSILGHFRLSTT 295
           + L++   D   I+  LGH R++TT
Sbjct: 324 SMLIALKEDSLVIKERLGHSRITTT 348


>gi|268591584|ref|ZP_06125805.1| putative integrase/recombinase y4rB [Providencia rettgeri DSM 1131]
 gi|291312881|gb|EFE53334.1| putative integrase/recombinase y4rB [Providencia rettgeri DSM 1131]
          Length = 322

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 68/156 (43%), Gaps = 19/156 (12%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL---- 216
           LL   GLRISEALSL   ++   +S L I + K  K R + L PS  KA+ +Y +     
Sbjct: 142 LLASTGLRISEALSLRISDVDLRRSILIIRRTKFGKSRSIVLHPSTSKALHQYLNQRKLT 201

Query: 217 -CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT-----LRHSFA 270
               D +    + L   + GK L      +  R LRR LG     T H      LRHSF 
Sbjct: 202 RAASDEDAYFFIGLRADVLGKRLGGQQVCQVFRALRRELGWVNRGTHHAPRIHDLRHSFV 261

Query: 271 TH---LLSNGG-----DLRSIQSILGHFRLSTTQIY 298
                L    G     ++ S+ + LGH  ++ T  Y
Sbjct: 262 VRRIILWQQQGIDVAHEMLSLSTYLGHASIAETYWY 297


>gi|157325443|ref|YP_001468868.1| gp28 [Listeria phage A006]
 gi|300765035|ref|ZP_07075023.1| integrase [Listeria monocytogenes FSL N1-017]
 gi|66733448|gb|AAY53262.1| gp28 [Listeria phage A006]
 gi|300514335|gb|EFK41394.1| integrase [Listeria monocytogenes FSL N1-017]
          Length = 376

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 24/194 (12%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           +AL+E+Q   LV  +  H +     I +  S IL+ +   G R SE + LT   I   Q 
Sbjct: 166 KALSEEQVKKLVKELNNHFNP----IHSSISVILFAI-ASGARFSEIIGLTWDCIDFVQK 220

Query: 187 TLRIQGKGD--------------KIRIVPLLPSVRKAI--LEYYDLCPF--DLNLNIQLP 228
           T++I    D                RI+ +  S    +  ++ Y       D + N    
Sbjct: 221 TIKINKTWDYKDTNTFSNTKNYSSNRIITIDDSTLSMLNKIKVYQSAEKLKDSSFNKNKL 280

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +F      P +     + +R+    LG+ ++ + H LRH+ AT LL N  +++ +   LG
Sbjct: 281 VFINTNNIPPSNNAINKSLRRYCTKLGINIAISVHGLRHTHATLLLYNDCNIKYLSKRLG 340

Query: 289 HFRLSTT-QIYTNV 301
           H  + TT + Y++V
Sbjct: 341 HNTIVTTLETYSHV 354


>gi|58616528|ref|YP_195657.1| putative integrase [Azoarcus sp. EbN1]
 gi|56315990|emb|CAI10633.1| putative integrase [Aromatoleum aromaticum EbN1]
          Length = 324

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 66/155 (42%), Gaps = 18/155 (11%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           L+   GLR+SEA+ L   ++   +  L I Q K  K R +P+ PS  KA+  Y       
Sbjct: 143 LMASTGLRVSEAIHLRDADVDLKRGMLMIRQTKFAKSRQLPIHPSTVKALARYRKQRERH 202

Query: 221 LNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGL-----PLSTTAHTLRHSFAT 271
           L     +P   G RG+    PL      R    LR  LG        +   H LRH+FA 
Sbjct: 203 LPTTTGMPFLIGSRGRRLGLPLGERQAHRVFTGLRDGLGWVNRGGHEAPRLHDLRHTFAV 262

Query: 272 HLL----SNGGDLR----SIQSILGHFRLSTTQIY 298
             L    ++G ++     ++ + +GH  +  T  Y
Sbjct: 263 RRLVPWYADGAEVDQKMLALSTYMGHAEIFYTYWY 297


>gi|293420931|ref|ZP_06661365.1| site-specific recombinase [Escherichia coli B088]
 gi|291324801|gb|EFE64217.1| site-specific recombinase [Escherichia coli B088]
          Length = 246

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 36/171 (21%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRI----------QGKGDKIRIV 200
           D R+  +   L+  G+RI EA  LTP++   D  +  +RI          +   D++R+V
Sbjct: 59  DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGLRPFVRILSEKVRARRGRPPKDEVRLV 118

Query: 201 PL--LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL---NPGVFQRYIRQ-LRRY- 253
           PL  +  VR+  +E + +              R  R +PL        + +++Q +RR  
Sbjct: 119 PLTDISYVRQ--MESWMIT------------TRPRRREPLWAVTDETMRNWLKQAVRRAE 164

Query: 254 ---LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              +   +  T HT RHS+  H+L +    + IQ++ GH    + ++YT V
Sbjct: 165 ADGVRFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215


>gi|187935699|ref|YP_001884296.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Clostridium botulinum B str. Eklund 17B]
 gi|187723852|gb|ACD25073.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum B str. Eklund 17B]
          Length = 180

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 76/155 (49%), Gaps = 14/155 (9%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--QGKGDKIRIVPLLPSVRKAI 210
           + RN+ +  L   CGLRIS+ L+L  +N+   +  +RI  Q  G  I IV L   ++K I
Sbjct: 22  NERNAIMFALGVYCGLRISDILNLRVKNV-KKKWNIRIKQQKTGKYIEIV-LNRELKKMI 79

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            +Y +      N++    L +  +G  K ++     R ++++     L  +   H+ R +
Sbjct: 80  DDYTE------NMDDDYYLIKSRKGQNKAISETQAYRIMQEIACEFKLK-NIGCHSTRKT 132

Query: 269 FATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           FA  L + N  D+  +Q  LGH   +T+  Y +++
Sbjct: 133 FAYWLYMDNKKDIGLVQKALGHGSSATSLTYIDMD 167


>gi|167900078|ref|ZP_02487479.1| phage integrase family protein [Burkholderia pseudomallei 7894]
          Length = 524

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 120/307 (39%), Gaps = 51/307 (16%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           IERG  LS LT      D   +  FL   T  +  I   R     E R F     T  + 
Sbjct: 214 IERGRALSSLTTD----DAIAYRAFLRRPTPRERWIGPSRPRHSAEWRPF-----TGALS 264

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN----SLPRALNEKQAL---TL 137
            RS   +L+ + +  ++L +++    +    ++   ++      + R  +E + L   TL
Sbjct: 265 ARSAAYALNVLSALFRWLIEQRYVLANPFAGVKVKSQAPRTGLDVSRGFSEGEWLLIRTL 324

Query: 138 VDNVLLHTSHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDDQST---LRIQ 191
            D   L  S+   W       + +LL   Y  GLR SE +     ++  D+     L + 
Sbjct: 325 ADG--LEWSY--GWSVPAAQRLRFLLDFGYATGLRASELVGAMLADVRRDEHGDHWLHVL 380

Query: 192 GKGDKIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGV-FQRY 246
           GKG K R    LP++ +  L+ Y     L    +  N   PL   +       G+   R 
Sbjct: 381 GKGGK-RGKVTLPALARMALDQYLVQRGLPVTPIRWNPATPLVASLEED--GAGIESTRL 437

Query: 247 IRQLRRYLGLPLST---------------TAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
            R LRR+  L                   + H +RH+ A+H L+ G +L  ++  L H  
Sbjct: 438 WRVLRRFFVLAADAIQEERPATAEKLHRASPHWMRHTHASHALARGAELIMVRDNLRHAS 497

Query: 292 LSTTQIY 298
           +STT  Y
Sbjct: 498 ISTTSTY 504


>gi|116511115|ref|YP_808331.1| integrase [Lactococcus lactis subsp. cremoris SK11]
 gi|116106769|gb|ABJ71909.1| Integrase [Lactococcus lactis subsp. cremoris SK11]
          Length = 398

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 73/174 (41%), Gaps = 30/174 (17%)

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG------------KGDKIR 198
           W++    AI  LL   GLRI EA +L+  +I  ++ T+ +              K    +
Sbjct: 214 WVNNELRAICRLLTASGLRIGEATALSWSDIDFEKQTISVSKTTTGHQTIQDTPKTKHSK 273

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYL 254
            V ++ S   + L+ + L      L +  P    +F      P N G    Y R LR+ L
Sbjct: 274 RVVIIDSKTISHLQRWHLYQKSYFLKLGQPNQSLIF------PTNQGKILDYQR-LRKSL 326

Query: 255 GLPLSTTA------HTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNV 301
                 T       H  RHS A+ LL+ G   + IQ+ LGH  +  T  IY+++
Sbjct: 327 QATFKATELHDIGFHGFRHSHASLLLNAGVSYKEIQTRLGHASIKMTMDIYSHL 380


>gi|317057318|ref|YP_004105785.1| integrase family protein [Ruminococcus albus 7]
 gi|315449587|gb|ADU23151.1| integrase family protein [Ruminococcus albus 7]
          Length = 403

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 12/93 (12%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLR-----RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
           LF    GK ++      ++++L      R+LGL      H+LRH  A+ L+ +G ++R++
Sbjct: 296 LFTTWNGKVMDGATPYNWLKKLCDRNNLRFLGL------HSLRHLNASLLIHSGVNIRTV 349

Query: 284 QSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYD 315
            + LGH + STT  IY +  +K   + M  + D
Sbjct: 350 SACLGHSQTSTTLNIYAHSMAKANAEAMESVAD 382


>gi|302562820|ref|ZP_07315162.1| transposase A [Streptomyces griseoflavus Tu4000]
 gi|302480438|gb|EFL43531.1| transposase A [Streptomyces griseoflavus Tu4000]
          Length = 271

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 70/175 (40%), Gaps = 29/175 (16%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQG----------------- 192
           AR+  ++ LL   GLRI EAL L  +++    S+      +QG                 
Sbjct: 82  ARDRFLIALLAATGLRIGEALGLRQEDLHFLASSRSLGCPVQGPHLHVRRRTDNPNRALA 141

Query: 193 KGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           K    R +P+ P +     +Y           D  + + + LFR   G+ +     +   
Sbjct: 142 KSRHSRCLPVTPDIVAFYTDYQHERNQVGAAADTGM-VFVNLFRPPLGRAMTYPNAKNVF 200

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +L R  G P     H LRHS ATH L  G D   +Q +LGH    +   Y +V+
Sbjct: 201 DRLARRAGHP--ARPHMLRHSAATHWLREGVDRDVVQKLLGHASPLSMDRYRHVD 253


>gi|302345418|ref|YP_003813771.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302149232|gb|ADK95494.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 375

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 33/145 (22%)

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDL--CPFDLNLNIQLPLFRGIRGKPLNPG--- 241
           T++++GK DK+R + +  +     L Y D+    FD    +Q  L+  I G  L  G   
Sbjct: 217 TIKLEGKLDKVRDLFVFAAYTG--LAYCDVQSFSFDTMTELQGTLYY-IDGSRLKTGSKF 273

Query: 242 ----------VFQRYIRQLRR--------YLGLPLST-------TAHTLRHSFATHLLSN 276
                     V ++Y  +L R        YL L  +        T H  RHSFAT  L++
Sbjct: 274 FTPILKPAMEVLKKYDFKLPRISNQKANDYLHLIQAAMKLNKNLTFHIARHSFATLALAH 333

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNV 301
              + ++  +LGH  + TTQIY  V
Sbjct: 334 DVPIENVARMLGHQNIRTTQIYAKV 358


>gi|295085116|emb|CBK66639.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 239

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 9/72 (12%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY---- 298
           F   ++ L R L L    T++T RHS+AT     G  +  I   LGH  + TTQIY    
Sbjct: 157 FNNSLKDLARVLRLDSPVTSYTFRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLKGF 216

Query: 299 -----TNVNSKN 305
                T VN KN
Sbjct: 217 GLRERTEVNRKN 228


>gi|262038386|ref|ZP_06011763.1| site-specific recombinase, phage integrase family [Leptotrichia
           goodfellowii F0264]
 gi|261747604|gb|EEY35066.1| site-specific recombinase, phage integrase family [Leptotrichia
           goodfellowii F0264]
          Length = 342

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 29/185 (15%)

Query: 117 RNLKKSNSLPRALNEKQAL-TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +N ++S+  P    E Q L  LVD        E  WID     IL L+Y  G RI E L 
Sbjct: 164 KNTEESSRKPFTTEEIQRLWDLVD--------ENDWIDT----ILILIY-TGFRIGELLE 210

Query: 176 LTPQNIMDDQSTLR--IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL--FR 231
           +   +I  D   ++  ++ +  K R+VP+   +       Y+L    ++ + +  +  F+
Sbjct: 211 IKNTDIDLDNRIIKGGLKTEAGKDRLVPINSKI-------YNLIKNRMSSDNEYLIVNFK 263

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           G + K  N   ++     +   LG+      H  RH+FAT L +   +  S++ ++GH  
Sbjct: 264 GEKMKYSN--YYREKFEPIMEELGM--KHRPHDTRHTFATLLSNADANKTSVKKLIGHNS 319

Query: 292 LSTTQ 296
            +TT+
Sbjct: 320 YTTTE 324


>gi|199598924|ref|ZP_03212333.1| Integrase [Lactobacillus rhamnosus HN001]
 gi|199590124|gb|EDY98221.1| Integrase [Lactobacillus rhamnosus HN001]
          Length = 375

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 35/68 (51%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LFR IR   L+     + +R + + L +  + T H LRH+  ++L++N  D+  I   LG
Sbjct: 283 LFRSIRHNMLSSTAINKDLRTIEKTLDISPAITFHGLRHTHVSYLIANHVDINYISRRLG 342

Query: 289 HFRLSTTQ 296
           H     TQ
Sbjct: 343 HANTMITQ 350


>gi|167760423|ref|ZP_02432550.1| hypothetical protein CLOSCI_02797 [Clostridium scindens ATCC 35704]
 gi|167661922|gb|EDS06052.1| hypothetical protein CLOSCI_02797 [Clostridium scindens ATCC 35704]
          Length = 412

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 79/189 (41%), Gaps = 43/189 (22%)

Query: 159 ILYLLYGCGLRISEALSLTPQNI--------MDDQSTLRIQGKG-----------DKIRI 199
           +L ++ G GLR  E + LT +++        ++ Q   +  G G             IR 
Sbjct: 210 LLQVMIGTGLRCGELIGLTWKDVDLKTRTVYVNHQLIYKNYGDGCDFHVTMPKTEAGIRE 269

Query: 200 VPLLPSVRKAI-----LEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVF---------- 243
           +P+   V KA      L +    P D+ +  +   +F    G+P+ P             
Sbjct: 270 IPMSKMVAKAFETQRRLNFQMGIPRDVKIEGLSNFVFMSRSGRPMMPTTVNFILRDIVKA 329

Query: 244 ------QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
                 +R  R+ R+   LP   +AH LRH+  T +     D++ +Q ++GH  +S T +
Sbjct: 330 YNEEENERAKRERRKPEELP-HISAHILRHTACTRMAETDLDMKVVQYVMGHANISVTME 388

Query: 297 IYTNVNSKN 305
           +Y ++  ++
Sbjct: 389 VYNHITDRS 397


>gi|116071373|ref|ZP_01468642.1| possible integrase/recombinase [Synechococcus sp. BL107]
 gi|116066778|gb|EAU72535.1| possible integrase/recombinase [Synechococcus sp. BL107]
          Length = 323

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 101/247 (40%), Gaps = 19/247 (7%)

Query: 63  IRQLSYTEIRAFISKRRTQ-KIGD---RSLKRSLSGIKSFLKYLKKRKITTESNI----L 114
           +R+L    +  ++S  R Q  IG    RS  R +S + +  ++  +   +  S +    +
Sbjct: 73  LRELDPALVDDWVSLLREQVAIGSLKPRSFNRRVSAVSALYRWASELTRSAVSGVPRNPI 132

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
             R    +  L + L E   LT V  V+     +   I AR+  ++   Y  G R+SE  
Sbjct: 133 PRRTGMSAPKLAKPLAESD-LTSVLGVISAAKVKGSAIAARDYVMVRGSYLLGCRVSELC 191

Query: 175 SLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
            L  ++I  +D+   +R+ GKG K R +     V    LE ++        +   P  + 
Sbjct: 192 RLRWEDIEPLDEGGNVRLLGKGSKPRTI----RVSTETLELFESLGRGEPGDWLFPSNK- 246

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
            R  PL        +    R + + L  T H  RH+ AT  +  G D+ ++ + LG    
Sbjct: 247 -RNGPLTRQAVAARMAMWGREVNVRL--TPHRCRHTHATFAIRRGVDVFTLSATLGRSST 303

Query: 293 STTQIYT 299
            TT  Y 
Sbjct: 304 GTTSHYV 310


>gi|224825804|ref|ZP_03698908.1| integrase family protein [Lutiella nitroferrum 2002]
 gi|224602028|gb|EEG08207.1| integrase family protein [Lutiella nitroferrum 2002]
          Length = 213

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 3/81 (3%)

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL--SNGGDLRSI-Q 284
           PL  G  G+PL    +Q+ +    +  GL +  T H  RH+ A +++  S   D R I Q
Sbjct: 103 PLVPGRFGQPLTVRNYQQRVAHWAKEAGLSIKVTPHFFRHTRAMNIMRSSEAHDPRGIVQ 162

Query: 285 SILGHFRLSTTQIYTNVNSKN 305
           + LGH  +++T IYT  + ++
Sbjct: 163 NALGHNSIASTGIYTQPSHED 183


>gi|317058175|ref|ZP_07922660.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           3_1_5R]
 gi|313683851|gb|EFS20686.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           3_1_5R]
          Length = 325

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 5/149 (3%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL- 216
           A++ +L     R  E   +   +I  ++ ++R  GKG K+    L      A++EY +  
Sbjct: 165 AVIEILISTAFRRQELAEIKLSDIDFEKGSIRTIGKGKKLGYGFLNAKALLALIEYIEKE 224

Query: 217 ---CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                  L +  +   FR   G+P +       I+++ +  G+      H  R + AT  
Sbjct: 225 RESKSVFLFIRGKNKRFREKAGEPYDASSLYALIKKIGKKAGVT-HVHPHRFRRTAATKA 283

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           L  G  L  ++ +L H  + TT IYT +N
Sbjct: 284 LDRGLGLEDVKELLRHEDIKTTLIYTTLN 312


>gi|291564051|emb|CBL42867.1| Site-specific recombinase XerC [butyrate-producing bacterium SS3/4]
          Length = 409

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 86/220 (39%), Gaps = 65/220 (29%)

Query: 139 DNVLLHTSHETKWIDARNSAILY--------LLYGCGLRISEALSLTPQNI--------M 182
           + V L  S + K ID    + +Y        ++ G GLR  E + LT +++        +
Sbjct: 178 ERVALTISQQEKLIDFVKQSNVYNTYYPMLTIMIGTGLRCGELIGLTWKDVDTRARRLNV 237

Query: 183 DDQSTLRIQGKGDK-----------IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--- 228
           D Q   +  G G +           IR++P+   V+KA  E          +N  L    
Sbjct: 238 DHQLIYKNYGDGCRFHISTPKTDSGIRVIPMTQEVQKAFEE-------QRKINFMLAKDK 290

Query: 229 ----------LFRGIRGKPLNP-GV---------------FQRYIRQLRRYLGLPLSTTA 262
                     +F    G+PL P GV                Q+  ++ R+   LP   +A
Sbjct: 291 SYEVDGYSGFVFTAKSGRPLMPYGVNSVLYNIVDAYNKAEVQKAKKEHRKAELLP-KVSA 349

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           H +RH+  T +     D++ +Q I+GH     T ++Y ++
Sbjct: 350 HVMRHTACTRMAECRMDIKVLQYIMGHAHFDVTMEVYNHL 389


>gi|269202472|ref|YP_003281741.1| integrase [Staphylococcus aureus subsp. aureus ED98]
 gi|262074762|gb|ACY10735.1| integrase [Staphylococcus aureus subsp. aureus ED98]
          Length = 349

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 18/168 (10%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           L++  GLRI EA++L   +    +  + I    D I    + P  +    E  D+ P   
Sbjct: 187 LMFYTGLRIGEAMALVWTDYNKYKKEISINKTMD-ISNRTIYPRPKTDSSE--DIVPLPK 243

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQR------------YIRQLRRYLGLPLSTTAHTLRHSF 269
            +N  L   R  R K LN    +R            Y    +++         H LRHS+
Sbjct: 244 FINTMLTE-RHQREKELNKYFDERSYFIFGGMAPKHYSHVQKKFQKAFPHYNIHALRHSY 302

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQ 316
           A++L +NG D+  +QS++ H +++ T   Y+++ ++   D  + I+D+
Sbjct: 303 ASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKKHD-AIAIFDK 349


>gi|229164788|ref|ZP_04292620.1| DNA integration/recombination/invertion protein [Bacillus cereus
           R309803]
 gi|228618691|gb|EEK75685.1| DNA integration/recombination/invertion protein [Bacillus cereus
           R309803]
          Length = 370

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 68/174 (39%), Gaps = 31/174 (17%)

Query: 153 DARNSAILYLLYGCGLRISEALSL-------------TPQNIMDDQSTLRIQGKGDKIRI 199
           D R S + ++    G+R  E L L               Q +  D  T  + GK      
Sbjct: 187 DGRYSMVFHMALVTGMRQGELLGLRWKDVDLEKGHLTISQTLSHDGKTFLLGGKTKSSLR 246

Query: 200 VPLLPSVRKAILEYYDLCPF-----------DLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
             LLP+   A L+ +                D +L +  P      G P+NP   +R + 
Sbjct: 247 KILLPASTVAGLKKHRAVVLKEKLSQGEEYQDNDLVMCTP-----SGTPINPANVRRSLN 301

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
            L R   +P     H LRH+ AT LL+ G +++ I   LGH  +  T   Y++V
Sbjct: 302 ALIRKAAVP-KIRFHDLRHTHATLLLAKGVNVKVISERLGHSNIKITLDTYSHV 354


>gi|42523500|ref|NP_968880.1| bacteriophage integrase or recombinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39575706|emb|CAE79873.1| probable bacteriophage integrase or recombinase [Bdellovibrio
           bacteriovorus HD100]
          Length = 177

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 19/149 (12%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAIL 211
           D RN  +++     G R  E L++   ++     ++ I+G KG   R +P+   +   + 
Sbjct: 34  DPRNCLMIWTALRTGARAQEVLNIQRADLNPYDESIFIRGLKGSNDREIPVHSDLFSRLH 93

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
            + +                   G  + P  + R  +    Y   P+    H LRH+FA 
Sbjct: 94  RFAE----------------SQGGTSVFPISYNRLYQVWEMYR--PVPKKFHALRHTFAI 135

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            L     DLR +Q  LGH  ++ T +Y +
Sbjct: 136 ELYQKTKDLRLVQVALGHRNITNTMVYAD 164


>gi|16329274|ref|NP_440002.1| integrase-recombinase protein [Synechocystis sp. PCC 6803]
 gi|34222774|sp|P72680|XERC_SYNY3 RecName: Full=Tyrosine recombinase xerC
 gi|1651754|dbj|BAA16682.1| integrase-recombinase protein [Synechocystis sp. PCC 6803]
          Length = 313

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 9/152 (5%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR---IQGKGDKIRIVPLLPSVRKAIL 211
           R+ AI+ LL+   LR +E   L   N+ D Q T R   I+GKG   +    L +   A++
Sbjct: 148 RDLAIMRLLWDNALRRAEVCGL---NVGDYQPTERQLLIKGKGKLGKQAITLSAKGMALI 204

Query: 212 EYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
             +   + P   N  +   L R   G  L+       +R      G+    + H +RHS 
Sbjct: 205 NQWLTAIGPRPKNEPLFCTLDRATFGHRLSGNAIYNLVRTSAESAGIHKVMSPHRVRHSA 264

Query: 270 ATHLL-SNGGDLRSIQSILGHFRLSTTQIYTN 300
            T  L +  GD R +Q +  H  L+T  IY +
Sbjct: 265 ITAALEATNGDTRKVQKLSRHSNLNTLMIYDD 296


>gi|436132|emb|CAA82325.1| unnamed protein product [Clostridium butyricum]
          Length = 364

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 111/265 (41%), Gaps = 48/265 (18%)

Query: 80  TQKIGDRSLKRSLSG----IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +  I DR LK+ +S      K FL  +   +    SNIL    LK  NS P+ L +++  
Sbjct: 115 SNNISDR-LKKFVSAPSRNFKGFLYGIAYEQKKVTSNILR---LKVPNSKPKTLTKEEIT 170

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           TL++             + R+  +L LLY  G+RI EALSL  ++       + ++ +G+
Sbjct: 171 TLINTCN----------NFRDKFLLNLLYETGIRIGEALSLWIEDFDISDMIIDLKDRGE 220

Query: 196 -----------KIRIVPLLPSVRKAILEY---YDLCPFDLNLNIQLPLFRGIRG----KP 237
                        R + +  ++    +EY   Y     + N      +F  I G    KP
Sbjct: 221 LENNAEIKTVSSPRRIDISQNLADMFMEYVAEYHTEEVETN-----HVFIKISGENQYKP 275

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
           +N        R L++     +  T H  RH+  T L   G +   ++   GH  + TT Q
Sbjct: 276 MNYIDVDNLFRTLKK--KTDIHVTPHIFRHTSLTILRMAGWEPELLRIRAGHKNIYTTLQ 333

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSI 321
            Y + + K     + E +++T P++
Sbjct: 334 TYIHPSDKE----ITEEFNKTQPNL 354


>gi|330825997|ref|YP_004389300.1| integrase family protein [Alicycliphilus denitrificans K601]
 gi|329311369|gb|AEB85784.1| integrase family protein [Alicycliphilus denitrificans K601]
          Length = 414

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 15/163 (9%)

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLP 204
           E ++ID     IL  +   GLR  E   L   +I  ++  L+++    K  K R VPL  
Sbjct: 250 EGEFIDHIRPMILVTI-NTGLRRGELFKLKRSDIDMEKRMLKVRAAAAKSGKSRFVPLNE 308

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN--PGVFQRYIRQLRRYLGLPLSTTA 262
                +  + D  P +   + +L +F G  G PL      +   ++ ++           
Sbjct: 309 EAAAMLARWMDQHPGE---DEEL-VFPGKDGAPLTNVDSAWGSIVKAVKLQ-----DFHW 359

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           H +RH FA+ L+  G DL +++ +LGH  L  T  Y ++  ++
Sbjct: 360 HDMRHHFASRLVMAGVDLNTVRELLGHADLKMTLRYAHLAPEH 402


>gi|325276304|ref|ZP_08142091.1| integrase family protein [Pseudomonas sp. TJI-51]
 gi|324098565|gb|EGB96624.1| integrase family protein [Pseudomonas sp. TJI-51]
          Length = 304

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 50/234 (21%), Positives = 100/234 (42%), Gaps = 11/234 (4%)

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALN 130
           A ++  R       S    ++ I+  +    ++ +     +L +R +K +    LP   N
Sbjct: 57  ALVAALRADGYAPNSSSLYVNAIRGVMNEAWRQGLIDHEQLLRIREVKPATGTRLPPGRN 116

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            ++  +L+  ++   + + +    R++AI+ LLYG G+R SE++ +    +     +L++
Sbjct: 117 LRR--SLIRELMDVCAADPRPQGVRDAAIIALLYGTGMRKSESVDIDLAQVDFAARSLQV 174

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNPG-VFQRY 246
            GKG+   I    P   + +  + DL    L   ++   F   R  RG  +    + +  
Sbjct: 175 VGKGNHQLIKYAPPWAFEKLQAWLDLRRQALPAGVEDDPFLFNRIRRGNHITRARITKHA 234

Query: 247 IRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           I  + R  G  + +    H  R +F T ++    DL   Q +  H  + TT IY
Sbjct: 235 IYYIARQRGAQVGVKIMPHDFRRAFITRVIEE-HDLSIAQKLAHHANIQTTAIY 287


>gi|307269909|ref|ZP_07551235.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|306513699|gb|EFM82305.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
          Length = 372

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 12/145 (8%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQS------TLRIQGKGDKIRIVPLL-PSVRKAILEYY 214
            L+  GLR+ EAL+L  +++  D        T+ ++ K +     P    S+R   L+  
Sbjct: 205 FLFMTGLRLGEALALNWEDVDFDSKVVYINKTMLVKNKREFRTTTPKTKSSIRTVSLDDE 264

Query: 215 DLCPFDLNLNIQLPL----FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            L  F++    Q PL       I G  L       +++++     +P+    H LRHS A
Sbjct: 265 TLRLFEIWREQQSPLKINLIFSIDGGTLAKSTTHGWLKKICDLADVPV-IKIHALRHSHA 323

Query: 271 THLLSNGGDLRSIQSILGHFRLSTT 295
           + L++   D   I+  LGH R++TT
Sbjct: 324 SMLIALKEDSLVIKERLGHSRITTT 348


>gi|294625352|ref|ZP_06703988.1| cointegrate resolution protein S [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292600370|gb|EFF44471.1| cointegrate resolution protein S [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 450

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 228 PLFR------GIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGD 279
           PLFR      GI   PL+P    R +R++ R  GL  P + + H+LR  FA    +NG D
Sbjct: 243 PLFRAVDQWGGIAAAPLHPNSLVRLLRRIFREAGLSSPNAYSGHSLRRGFAGWANANGWD 302

Query: 280 LRSIQSILG 288
           ++++   +G
Sbjct: 303 VKALMEYVG 311


>gi|291515401|emb|CBK64611.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 405

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           R++R++ + +G+   TT +  RH+FAT L  +G ++  I   LGH  LSTTQIY
Sbjct: 336 RWLRKIGQRVGIEHLTT-YVARHTFATVLKRSGVNIAIISESLGHSDLSTTQIY 388


>gi|226328879|ref|ZP_03804397.1| hypothetical protein PROPEN_02780 [Proteus penneri ATCC 35198]
 gi|225202065|gb|EEG84419.1| hypothetical protein PROPEN_02780 [Proteus penneri ATCC 35198]
          Length = 186

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 3/166 (1%)

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIR 198
           N +L  + E ++ + R+  +  + +  G R+SE   LT  +I  +   L ++  KG    
Sbjct: 13  NSILKQAKEGRYPE-RDYCMFLMCFLHGFRVSELCKLTLSDIDLESRILYVRRLKGGLST 71

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
             P++    +A++ +          + +  +F   +  P++       +R+L +   + +
Sbjct: 72  TQPIIEDEYEALVNWLKKRETWREADSEW-VFLSQKTGPISRQQVYGLLRRLGKKANVSI 130

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
               H LRH+    L   G D R IQ  LGH  +S T IYT  NSK
Sbjct: 131 IPHPHMLRHACGYALADLGRDTRLIQDYLGHRNISHTVIYTASNSK 176


>gi|312142444|ref|YP_003993890.1| integrase family protein [Halanaerobium sp. 'sapolanicus']
 gi|311903095|gb|ADQ13536.1| integrase family protein [Halanaerobium sp. 'sapolanicus']
          Length = 181

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 7/149 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           RN  I  +    GLRIS+ LSL  ++I   +  + I+ K  KI+   +   +R+ + EY 
Sbjct: 26  RNYMIFVVGINTGLRISDLLSLKVEHIRYKRHIMIIEKKTSKIKQFLINSYLRRELDEYM 85

Query: 215 -DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            D+  ++     ++      + KPL+     R ++++ R + L       T R +F  H 
Sbjct: 86  KDMDDYEYLFQSRIG-----KNKPLSRFQAHRIMKEVGREVNLE-RIACTTTRKTFGYHH 139

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                DL  +Q +  H +   T  Y  +N
Sbjct: 140 YKQYKDLALLQKLFNHSKQWVTLDYIGIN 168


>gi|298245891|ref|ZP_06969697.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297553372|gb|EFH87237.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 384

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +F  ++G  L+P       R++    GLP     H LRHS A+ LL  G +++ IQ +LG
Sbjct: 285 VFPNLKGGYLHPAHMGEKFRKILAEAGLP-PIHFHDLRHSAASILLCMGVNIKVIQELLG 343

Query: 289 HFRLSTT 295
           H  +S T
Sbjct: 344 HSDISIT 350


>gi|256423766|ref|YP_003124419.1| integrase family protein [Chitinophaga pinensis DSM 2588]
 gi|256038674|gb|ACU62218.1| integrase family protein [Chitinophaga pinensis DSM 2588]
          Length = 287

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 118/276 (42%), Gaps = 18/276 (6%)

Query: 31  LSKLTLQSYECDT-----RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           L K   Q Y   T     R+   FL+ Y E    +       Y+++ ++I   R +    
Sbjct: 3   LDKYLQQHYTASTAASYLREINHFLSAYPEAAGAV-------YSDLMSYIGVLRHRYRNS 55

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            +L R +S IK +  YL +     +      RN++  +   R +  +   +  +  +L  
Sbjct: 56  YTLHRIVSSIKVYYDYLCQIGARLDHP---ARNIRLRDKRSRDIQLQDLFSGAELEVLLE 112

Query: 146 SHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG-DKIRIVPLL 203
             E   + A RN  ++ LL   GL + E  +L+  +I+ ++ ++ I+G      R +PL 
Sbjct: 113 REERYSVLALRNKVLISLLVYQGLTVGELSALSVSDILLEKGSVYIKGTAVTNRRELPLK 172

Query: 204 PSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           P     +  Y  ++ P  L  +    L  G RGK +      ++++++ R L      +A
Sbjct: 173 PLQIDWLTSYLSEVHPQLLRGSESDLLLVGHRGKGMPGTEISKHVKRIYRGLYRGREVSA 232

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             +R S   +L S G D+  +Q   GH   S+T+ Y
Sbjct: 233 QRIRQSVIANLFSQGHDIGVVQQFAGHKYPSSTERY 268


>gi|154485138|ref|ZP_02027586.1| hypothetical protein EUBVEN_02862 [Eubacterium ventriosum ATCC
           27560]
 gi|149734091|gb|EDM50210.1| hypothetical protein EUBVEN_02862 [Eubacterium ventriosum ATCC
           27560]
          Length = 432

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           H LRH++ ++LLSNG   + +Q +LGH  +STT  IY + 
Sbjct: 374 HMLRHTYTSNLLSNGAAPKDVQELLGHADVSTTMNIYAHA 413


>gi|161522694|ref|YP_001585623.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189348450|ref|YP_001941646.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
 gi|160346247|gb|ABX19331.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189338588|dbj|BAG47656.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
          Length = 490

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 67/172 (38%), Gaps = 21/172 (12%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNI------MDDQSTLRIQGKGDKIRIVPLLPS 205
           + AR  AI  L    G+R+ E +    Q +       D + TL + GKG K R +PL   
Sbjct: 304 VAARRRAIWMLYRYAGVRLVELVWSDDQKLPVAEVESDGRWTLHVYGKGQKTRAIPLPQG 363

Query: 206 VRKAILEYYDL--CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-- 261
               +  Y  L   P       ++ L  G++G  L        ++ +       L  T  
Sbjct: 364 CVSVLQAYRQLRGLPAHPESGERVALIHGLKGGSLQSSGLYDEVKAIFVAAAATLEYTDP 423

Query: 262 ----------AHTLRHSFA-THLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                      H LRH++A T ++     L + Q++LGH  + TT  Y   +
Sbjct: 424 GGAATLRRASPHWLRHAYARTLVVDRQVPLPAAQALLGHASIQTTAAYAKTD 475


>gi|71901659|ref|ZP_00683736.1| Phage integrase [Xylella fastidiosa Ann-1]
 gi|71728563|gb|EAO30717.1| Phage integrase [Xylella fastidiosa Ann-1]
          Length = 369

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 8/116 (6%)

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG------IRGKPLNPGVFQRYIRQLR 251
           ++V L P+ R+   ++    P    LN  +   +         GKP+     +   R+LR
Sbjct: 218 KLVQLNPAGRQQTKKFRPTVPLLPALNAYIATVKPESYLVHWHGKPIK--SIKTTWRKLR 275

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +  GLPL     T+RH+ AT L   G     +  +LGH    TT  Y   +    G
Sbjct: 276 KRAGLPLWFVPKTIRHTLATWLRQRGVPACDVSGLLGHHAGGTTDAYAKFDPSYMG 331


>gi|323344352|ref|ZP_08084577.1| integrase [Prevotella oralis ATCC 33269]
 gi|323094479|gb|EFZ37055.1| integrase [Prevotella oralis ATCC 33269]
          Length = 389

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 34/67 (50%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           ++ G    +++ +    G+    T H  RHSF T  L  G  + SI  ++GH  +++TQI
Sbjct: 311 MSKGKLSTHLKAVGLACGIRTPLTWHVGRHSFGTLTLEAGIPMESIAKMMGHSSIASTQI 370

Query: 298 YTNVNSK 304
           Y  +  +
Sbjct: 371 YAQITDQ 377


>gi|298244308|ref|ZP_06968114.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297551789|gb|EFH85654.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 378

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 78/178 (43%), Gaps = 32/178 (17%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------------GKG----- 194
           D    A+  L  G G+R  E + L  ++I  D +T R+Q             GKG     
Sbjct: 186 DHPQEALFLLAIGTGMRRGEIMGLKWRDI--DLATRRLQVRRVLTRIPSRISGKGYIEDE 243

Query: 195 ---DKIRIVPLLPSVRKAILEYYDLCPFDLNLNI------QLPLFRGIRGKPLNPGV-FQ 244
              +K R   +LPS     L+ + +   +  L           +F    G  +NP    Q
Sbjct: 244 PKSEKSRRNIVLPSFVLEGLKQHRVRQLEAKLKAGPRWEEHDYVFCTSVGTHVNPDRDIQ 303

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
              ++L +  GLP +   H LRHS AT +LS G   + +Q ILGH R++ T  +Y++V
Sbjct: 304 EPFKKLLKKAGLP-NIRFHDLRHSAATLMLSMGVHPKIVQEILGHSRINMTLDVYSHV 360


>gi|291302817|ref|YP_003514095.1| integrase family protein [Stackebrandtia nassauensis DSM 44728]
 gi|290572037|gb|ADD45002.1| integrase family protein [Stackebrandtia nassauensis DSM 44728]
          Length = 498

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R +R   +  G+ +    H LRH+ A+  L  G DL  ++  LGH  +STT+ Y  +++ 
Sbjct: 368 RILRPALKKSGIAVDIAMHKLRHAHASWALKGGADLHIVKERLGHANISTTERY--LHAM 425

Query: 305 NGGD 308
           + GD
Sbjct: 426 DEGD 429


>gi|317132309|ref|YP_004091623.1| integrase family protein [Ethanoligenens harbinense YUAN-3]
 gi|315470288|gb|ADU26892.1| integrase family protein [Ethanoligenens harbinense YUAN-3]
          Length = 464

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 3/69 (4%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS-NGGDLRSIQSILGHFRLS 293
           G+P +  +  +   +L+   GLP +   H+LRHS  T+ L  N GDL++ Q   GH  + 
Sbjct: 328 GRPCDDRIILKEFSKLKETAGLP-NVVFHSLRHSSTTYKLKLNHGDLKATQGDTGHAEID 386

Query: 294 T-TQIYTNV 301
             T+IY ++
Sbjct: 387 MITKIYAHI 395


>gi|299821514|ref|ZP_07053402.1| bacteriophage integrase [Listeria grayi DSM 20601]
 gi|299817179|gb|EFI84415.1| bacteriophage integrase [Listeria grayi DSM 20601]
          Length = 390

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 7/136 (5%)

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFD 220
           G  +RI++ +   P N MD    L  + KG  IR + +       +RK I++  +L    
Sbjct: 229 GYYIRITQTI-YNPTNKMDKYQLLPPKTKGS-IRDIEISYYIYELIRKQIIKQKELY-IA 285

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
           L   ++  +F    G P  P      +R++ +   LP   + H  RHS+A+ L   G   
Sbjct: 286 LGGAMKRFIFSKDFGYPETPKQIANRMRRILKLCDLPSYYSPHNFRHSYASILEEEGVPT 345

Query: 281 RSIQSILGHFRLSTTQ 296
             IQ  LGH    TT+
Sbjct: 346 LYIQKQLGHSTFETTK 361


>gi|317479187|ref|ZP_07938323.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_1_36]
 gi|316904631|gb|EFV26449.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_1_36]
          Length = 101

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 26/39 (66%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H LRH+ AT +L+ G DL ++  +LGH  + TTQIY  +
Sbjct: 47  HCLRHTHATMMLTLGVDLYTVSKLLGHTNIQTTQIYAKL 85


>gi|313149680|ref|ZP_07811873.1| transposase [Bacteroides fragilis 3_1_12]
 gi|313138447|gb|EFR55807.1| transposase [Bacteroides fragilis 3_1_12]
          Length = 406

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 88/193 (45%), Gaps = 25/193 (12%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K   ++ RAL+++Q L L  + L       + + +R +  L+  Y  G+   + + L  +
Sbjct: 205 KPCKTVKRALDKEQMLRLTQSDL---GANPELMQSR-ALFLFGFYAQGMAFVDIIFLRWK 260

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           NI  +  + R       I+I  + P + +AIL+ Y +   +++  I  P+ + +    +N
Sbjct: 261 NICGNSISYRRHKSKQTIQIT-ITPQI-QAILDEYGINKENVDGYI-FPIIQPV----IN 313

Query: 240 P--------------GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
           P              G   R+++ +   LG+  S T +T RH++AT     G  + +I +
Sbjct: 314 PQTDKNEYEQYRVALGRTNRHLKTISGKLGIAPSLTTYTARHTWATLAREYGAPVATIST 373

Query: 286 ILGHFRLSTTQIY 298
            LGH +   T +Y
Sbjct: 374 GLGHTKEEMTLVY 386


>gi|312889625|ref|ZP_07749174.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311297847|gb|EFQ74967.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 423

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 93/225 (41%), Gaps = 28/225 (12%)

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC-GLRISEALSLTPQ 179
           K+  +P   N K+AL   D   L+ +  T     +     +  Y C G+   +   L  +
Sbjct: 204 KTYKIPNGKNVKKALETPDLNALYIADATDSFMLKARDFWFFSYQCNGMNFRDIAELRFK 263

Query: 180 NIMDDQ-STLRIQGKGDKIR-----IVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFR 231
           +I D   S LR + K          +VPL   ++  I +Y +    P D       P+F+
Sbjct: 264 DIHDTYFSFLRHKTKNTTKEDPTPIVVPLTSYIKDFIKKYANEKGKPNDY----LFPIFQ 319

Query: 232 -GIRGKPLNPGVFQRYIRQLRRY-------LGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
            G+  K  +  V Q +IR + ++       LGL         RHSF T      G L   
Sbjct: 320 TGMSAKERH-RVNQNFIRFVNQHMQKLVDQLGLSFKLGTMVARHSFTTQATRTMG-LEFA 377

Query: 284 QSILGHFRLSTTQIY----TNVNSKNGGDWMMEIYDQTHPSITQK 324
           Q  LGH  ++TTQ Y     N   K+  + +ME +    P++TQ+
Sbjct: 378 QEALGHTTMNTTQNYWKGFENDAKKSMAEKLME-FTVAKPTVTQE 421


>gi|302670138|ref|YP_003830098.1| phage integrase family protein [Butyrivibrio proteoclasticus B316]
 gi|302394611|gb|ADL33516.1| phage integrase family protein [Butyrivibrio proteoclasticus B316]
          Length = 409

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 5/107 (4%)

Query: 197 IRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           IR VPL    +  + E+  L C    N+     +F+   G P++     + ++Q     G
Sbjct: 293 IRTVPLSSQAQACLKEHIKLWCN---NIEASSFVFQSENGNPISLQHLNKKLKQALVNAG 349

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           +    + H LRH+  ++ + +G D+  I    GH  +STT +IY N+
Sbjct: 350 ITKDISLHGLRHTGISYYIRHGVDISLISRTAGHSDISTTMKIYYNI 396


>gi|295102658|emb|CBL00203.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 485

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVN 302
           H LRHS A+ L +NG  L+ IQ  LGH  +STT  IYT+++
Sbjct: 424 HDLRHSCASLLYANGVSLKEIQEWLGHSDISTTSNIYTHLD 464


>gi|16263335|ref|NP_436128.1| integrase/recombinase [Sinorhizobium meliloti 1021]
 gi|16263635|ref|NP_436428.1| Integrase/recombinase [Sinorhizobium meliloti 1021]
 gi|14524016|gb|AAK65540.1| integrase/recombinase [Sinorhizobium meliloti 1021]
 gi|14524345|gb|AAK65840.1| Integrase/recombinase [Sinorhizobium meliloti 1021]
          Length = 409

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 133/318 (41%), Gaps = 39/318 (12%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE- 70
           + LL + Q+WL+   + RGL++ T+  +     + L  L   T           L Y   
Sbjct: 116 YPLLDDYQSWLR---VHRGLAERTIARHLRHLHKLLPELGTPT-----------LDYDAA 161

Query: 71  -IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES------NILNMRNLKKSN 123
            IR  + + R ++ G   L+   S ++S+L++L    +   +       +L  R     +
Sbjct: 162 LIRNVVREWR-ERTGPADLRTITSALRSYLRFLAGVGLCRPNLDHAIPPVLQWR----LS 216

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           SLPR L    A   V+ V+      T+    R+ AIL LL   GLR  +   L   +I  
Sbjct: 217 SLPRYL----AAADVERVIASCDQLTR-GRLRDRAILLLLARLGLRAGDVAGLRLSDIEW 271

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGV 242
               LR+ GK  +   +PL   V  A+L Y +   P      + L +    R    +  V
Sbjct: 272 TSGMLRLSGKARRQVRLPLPQDVGDALLAYIEQERPRMHQEAVFLTMIAPYRSFAQSSHV 331

Query: 243 FQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                  L+R  +  P ST A  LRHS AT +L +G  L ++ ++L H  L  T  Y  V
Sbjct: 332 STIVALALKRAGISDPPSTGACLLRHSAATSMLRSGATLEAVGTVLRHRSLDMTAHYAKV 391

Query: 302 NSKNGGDWMMEIYDQTHP 319
           ++      M+E   Q  P
Sbjct: 392 DAA-----MLEQVAQPWP 404


>gi|331091918|ref|ZP_08340750.1| hypothetical protein HMPREF9477_01393 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402817|gb|EGG82384.1| hypothetical protein HMPREF9477_01393 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 413

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 21/138 (15%)

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQL- 250
           IRI+P++ +V +A+ + Y     +     ++      +F    G   NP    R I+++ 
Sbjct: 269 IRIIPMMDTVYEALKKEYAFQEENGFNETEIDGMTGFVFSNRFGNVHNPQAINRAIKRIY 328

Query: 251 --------------RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT- 295
                         +R   L    + H LRH+F +    N  +L+ IQSI+GH  + TT 
Sbjct: 329 EAYNAEEVVKAAKEKREPILIPHFSCHHLRHTFCSRFCENETNLKVIQSIMGHADIETTM 388

Query: 296 QIYTNVNSKNGGDWMMEI 313
            IY  V      + + E+
Sbjct: 389 DIYAEVTETKKYESIQEL 406


>gi|237797254|ref|ZP_04585715.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020104|gb|EGI00161.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 348

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 104/238 (43%), Gaps = 13/238 (5%)

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            + A ++  R       +    ++ I+  +    +  + +   +L +R++K  +      
Sbjct: 98  HVTALVATLREDDYAPNTTSLYVNAIRGVMNEAWRHDLISHDQLLKIRSIKPVSGTRLFK 157

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
                 TL+  ++   + + +    R++AI+ +LYG G+R SE+++L    +   + +LR
Sbjct: 158 RRNIRRTLIRELMEACAADPRPQGRRDAAIIAILYGSGMRKSESVNLDISQVDFAERSLR 217

Query: 190 IQGKGDKIRIVPLLPS-VRKAILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNPGVFQR 245
           + GKG+K +++   P    KA+ ++ +L    L       +F   R  RG  +      +
Sbjct: 218 VMGKGNK-QLIKYAPQWAFKALGDWLELRRSFLQPGQSDDVFLFNRIRRGSHITRDRITK 276

Query: 246 Y-----IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +      +Q  R +G  ++   H  R SF T ++    DL   Q +  H  +STT  Y
Sbjct: 277 HAIYFIAKQRGRQVG--VNIMPHDFRRSFITRVIEE-YDLSIAQKLAHHTHISTTASY 331


>gi|210630405|ref|ZP_03296440.1| hypothetical protein COLSTE_00324 [Collinsella stercoris DSM 13279]
 gi|210160487|gb|EEA91458.1| hypothetical protein COLSTE_00324 [Collinsella stercoris DSM 13279]
          Length = 153

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 8/146 (5%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           LL   G+R+ E + L   ++        + GKG+K R     P    A  + +     + 
Sbjct: 4   LLASTGVRVGEFIRLDIDDVDIQGRECVVTGKGNKQR-----PVYFDARTKLHPTAYLES 58

Query: 222 NLNIQLPLFRGIRGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
             +    LF  + G+   L+    ++ ++ L     +      HT R + ATH +  G  
Sbjct: 59  RKDSNPALFVSLNGRTQRLSVCTIEKRMKALGEKAQIG-RVHPHTFRRTLATHAIDKGMP 117

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKN 305
           +  +Q +LGH ++ TT  Y  VN  N
Sbjct: 118 IEQVQKLLGHSKIETTMHYAMVNQSN 143


>gi|134101615|ref|YP_001107276.1| phage integrase family site specific recombinase [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133914238|emb|CAM04351.1| site-specific recombinase, phage integrase family
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 316

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 5/136 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI+ L    G R++E   L  +++     ++ + GKG K+R V +     +A+  Y 
Sbjct: 152 RDQAIIRLFCNTGARLAEVAHLRLEDVDLKTESVTLYGKGGKVRRVRMGARTARALSRY- 210

Query: 215 DLCPFDLNLNIQLP-LFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
            L          LP L+   R G+ LN    +  +++L +  GL     AH  RH++A  
Sbjct: 211 -LRARAKRKGADLPNLWLADRGGQALNANGIKIRLKRLGQRAGLD-HVHAHRWRHTYAHQ 268

Query: 273 LLSNGGDLRSIQSILG 288
               GGD   +  +LG
Sbjct: 269 WKRAGGDTGDLMLLLG 284


>gi|126661403|ref|ZP_01732464.1| phage integrase [Cyanothece sp. CCY0110]
 gi|126617310|gb|EAZ88118.1| phage integrase [Cyanothece sp. CCY0110]
          Length = 401

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           R+  ++   P   + H+LRH+ AT  L  G  L  +Q +LGH    TT +Y ++    G 
Sbjct: 290 REFSQHKPKPRKLSPHSLRHTAATLALRAGATLEQVQDLLGHTDPKTTMVYVHI----GD 345

Query: 308 DWM 310
            W+
Sbjct: 346 RWL 348


>gi|319777296|ref|YP_004136947.1| integrase [Mycoplasma fermentans M64]
 gi|318038371|gb|ADV34570.1| Integrase [Mycoplasma fermentans M64]
          Length = 253

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 18/146 (12%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK-AILEYYDLC 217
           ++  L   G R+SE + +  +++      + I  KG K R + +   ++K AI+   + C
Sbjct: 102 VVRFLAATGARVSELIKIKVEHV--KLGYIDIYSKGGKARRIYIPLKLKKEAIIWLENKC 159

Query: 218 PFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRY---LGL-PLSTTAHTLRHSFATH 272
              LN      +F    GK +   G+ Q    QL++Y    G+ P     H+ RH FA +
Sbjct: 160 ---LNSGY---IFLNRFGKAITTRGISQ----QLKKYALKFGINPKVVYPHSFRHRFAKN 209

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIY 298
            L    D+  +  ++GH  + TT+IY
Sbjct: 210 FLEKYNDISFLADLMGHESIETTRIY 235


>gi|307289375|ref|ZP_07569329.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0109]
 gi|306499630|gb|EFM68993.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0109]
          Length = 378

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 30/163 (18%)

Query: 157 SAILYLLYGC-GLRISEALSLTPQNIMDDQSTLRIQ----------GKGD------KIRI 199
           S I+ ++ G  G+R +E L  T  +I  +   + I           GK        KI+I
Sbjct: 192 SPIMVVVAGATGMRFAELLGTTWNDINFEDEIIDIHKTWNYKMNCWGKTKNESSVRKIKI 251

Query: 200 ----VPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRR 252
                 LL   +KA  E +D       L +Q P   +F   +   ++     +Y+R+   
Sbjct: 252 DFHTAQLLKEYKKAQKELFD------KLEVQNPEQFIFYNSQNGLISNNAVTKYLRKKLS 305

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            +G+    T H LRH+ A+ LL  G D   +   LGH  L TT
Sbjct: 306 EIGVTKKFTLHGLRHTHASVLLYQGCDTIYVSKRLGHSSLDTT 348


>gi|256786047|ref|ZP_05524478.1| phage-related integrase [Streptomyces lividans TK24]
 gi|289769944|ref|ZP_06529322.1| integrase [Streptomyces lividans TK24]
 gi|289700143|gb|EFD67572.1| integrase [Streptomyces lividans TK24]
          Length = 419

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 65/166 (39%), Gaps = 38/166 (22%)

Query: 162 LLYGCGLRISEALSLTPQNI------MDDQSTLRIQG--------KGDKIRIVPLLPSVR 207
           L +GCGLR  E      ++I      +     +R+ G        KG++IR VPL   + 
Sbjct: 216 LAFGCGLRQGEIFGFAVEDIDFRGGWIHVNRQVRLVGTKPVFALPKGNRIRSVPLSAQLA 275

Query: 208 KAILEYYD-LCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQ--RYIRQL----- 250
            A+  +     P  + L    P         LF   +G+  N  VF    + R L     
Sbjct: 276 AALKAHIRRFPPTAVTLPWAKPDGEPKTFRLLFVDEKGRAYNRSVFNMGAWKRALVAADV 335

Query: 251 -------RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
                   RYL        H LRH++A+ LL  G  ++++   LGH
Sbjct: 336 IPPRKRGARYLQAAPEDGMHALRHAYASVLLDAGESIKALSEYLGH 381


>gi|210634723|ref|ZP_03298251.1| hypothetical protein COLSTE_02176 [Collinsella stercoris DSM 13279]
 gi|210158663|gb|EEA89634.1| hypothetical protein COLSTE_02176 [Collinsella stercoris DSM 13279]
          Length = 391

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
           L+   PL   + G  +      R   ++R   GL    T H+LRH+ A+ L++NG D+++
Sbjct: 292 LDADAPLVT-LDGSYMRTRTVSRAFSRIRDSCGLSREITFHSLRHTHASWLIANGCDIKT 350

Query: 283 IQSILGHFRLSTT-QIY 298
           +   +GH   +TT +IY
Sbjct: 351 LSERMGHADEATTLRIY 367


>gi|160945698|ref|ZP_02092924.1| hypothetical protein FAEPRAM212_03229 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443429|gb|EDP20434.1| hypothetical protein FAEPRAM212_03229 [Faecalibacterium prausnitzii
           M21/2]
          Length = 498

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVN 302
           H LRHS A+ L +NG  L+ IQ  LGH  +STT  IYT+++
Sbjct: 437 HDLRHSCASLLYANGVSLKEIQEWLGHSDISTTSNIYTHLD 477


>gi|330998518|ref|ZP_08322340.1| phage integrase, SAM-like domain protein [Paraprevotella
           xylaniphila YIT 11841]
 gi|329568282|gb|EGG50094.1| phage integrase, SAM-like domain protein [Paraprevotella
           xylaniphila YIT 11841]
          Length = 459

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 32/54 (59%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           R ++++ R  GL +  T +  RH++AT +   G DL  + + LGH  L TTQIY
Sbjct: 384 RNLKKIGRIAGLRIPLTTYVARHTWATTMRDMGYDLSIVSTGLGHDNLKTTQIY 437


>gi|313903463|ref|ZP_07836854.1| integrase family protein [Thermaerobacter subterraneus DSM 13965]
 gi|313466284|gb|EFR61807.1| integrase family protein [Thermaerobacter subterraneus DSM 13965]
          Length = 383

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           GKP +P  F +    L +  G P     H LRHS AT LL +G  ++++   LGH   + 
Sbjct: 294 GKPYDPAEFSKAFTSLAKRAGFP-DLRFHDLRHSHATLLLRDGTPIKAVAERLGHASAAF 352

Query: 295 T 295
           T
Sbjct: 353 T 353


>gi|288926489|ref|ZP_06420408.1| integrase [Prevotella buccae D17]
 gi|288336701|gb|EFC75068.1| integrase [Prevotella buccae D17]
          Length = 66

 Score = 40.8 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           RH+FAT  LS G  + S+  +LGH  + TTQIY  + +K
Sbjct: 3   RHTFATMSLSKGVSMESVSKMLGHTNIKTTQIYARITNK 41


>gi|262046435|ref|ZP_06019397.1| site-specific tyrosine recombinase XerS [Lactobacillus crispatus
           MV-3A-US]
 gi|260573306|gb|EEX29864.1| site-specific tyrosine recombinase XerS [Lactobacillus crispatus
           MV-3A-US]
          Length = 388

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 69/164 (42%), Gaps = 8/164 (4%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI  L+ G G+R+SE   +   ++    + L +  KG +   VP+       I  Y 
Sbjct: 189 RDMAIAALILGTGIRVSECAGVDLSDLNLKDAVLDVTRKGGQKDSVPIAEWTLPYIKRYK 248

Query: 215 DLCPFDLNLNI-QLPLF----RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
            +     + +  Q+  F     G + + +     ++ I +     G PL  T H LRH+ 
Sbjct: 249 GIRNERYHADSKQVAFFLTQWHG-QTRRITTNAIEKMINKYSAAFGHPL--TPHKLRHTV 305

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           A+ L     D   +   LG    S T +YT+V+ K     + EI
Sbjct: 306 ASELYEVTKDQVLVAQQLGQKGTSATDLYTHVDQKKQRAALNEI 349


>gi|237722359|ref|ZP_04552840.1| integrase [Bacteroides sp. 2_2_4]
 gi|293371989|ref|ZP_06618388.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|229448169|gb|EEO53960.1| integrase [Bacteroides sp. 2_2_4]
 gi|292633000|gb|EFF51582.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 195

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 13/148 (8%)

Query: 160 LYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD-L 216
           L +  GC  GLRIS+ LSL  + I+D      I+ K  K+R + L P ++  I E Y+ +
Sbjct: 35  LLIALGCFTGLRISDILSLRWKQILDTDEFTVIEQKTGKVRTIRLNPQLQHHIKECYEHI 94

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLS 275
            P  +N     P+    +G           ++++++   L +   + H+LR +F   + +
Sbjct: 95  NPVGIN----APILISQKGTIFTIQRINIILKEVKKKYRLKIKNFSCHSLRKTFGRQVYN 150

Query: 276 NGGD-----LRSIQSILGHFRLSTTQIY 298
              D     L  +  +  H  ++ T+ Y
Sbjct: 151 MNSDNAELALVKLMELFNHSSVAITKRY 178


>gi|160883750|ref|ZP_02064753.1| hypothetical protein BACOVA_01722 [Bacteroides ovatus ATCC 8483]
 gi|156110835|gb|EDO12580.1| hypothetical protein BACOVA_01722 [Bacteroides ovatus ATCC 8483]
          Length = 245

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (53%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           F   ++ L R L L    T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 157 FNNCLKDLARALHLQSPVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 212


>gi|126668671|ref|ZP_01739622.1| putative integrase [Marinobacter sp. ELB17]
 gi|126626849|gb|EAZ97495.1| putative integrase [Marinobacter sp. ELB17]
          Length = 178

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 5/151 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213
           R+ AIL LL   GLR  E   LT  +I   +  L + Q K       PL   V +AIL+Y
Sbjct: 14  RDYAILLLLVTYGLRGHEVAGLTLDHIDWKRERLLVPQRKAGHTTAYPLSSVVGEAILDY 73

Query: 214 Y-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS-TTAHTLRHSFAT 271
             +  P      +   +   IR  P+        + Q  R  G+ +    +HTLRH+   
Sbjct: 74  LKNARPHTEERRLFFRVVAPIR--PVTAVTLANQVTQYLRKAGIHVRRPGSHTLRHTCVQ 131

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            L+    + + I   +GH   S+T+IY+ V+
Sbjct: 132 RLVDAEFNFKIIGDYVGHASPSSTRIYSKVD 162


>gi|116749674|ref|YP_846361.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
 gi|116698738|gb|ABK17926.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
          Length = 348

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 18/154 (11%)

Query: 156 NSAILYL-LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           ++A LY+ L   G  +SE LSL  + +      + I  +  + RI+P+   VR  +++  
Sbjct: 182 DAADLYMVLLDTGASLSEVLSLKWKGVDLVGGKIGIDVESGRNRILPMTRRVRSMLMQRM 241

Query: 215 DL---CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
            +    PF  N+  Q   +              +++R+     G P     H+LRH+FA 
Sbjct: 242 GMGIKSPFS-NVTYQQAEYN------------WKWVRKQMGLGGDP-GFVIHSLRHTFAA 287

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             +  G  L +++++LGH  +  T+ Y    + N
Sbjct: 288 RTVQRGIGLPALKALLGHSTIRLTERYARFGAGN 321


>gi|327474234|gb|EGF19641.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK408]
          Length = 357

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 110/296 (37%), Gaps = 50/296 (16%)

Query: 57  KITIQTIRQLSYTEIRAFISKRR---------TQK-IGDRSLKRSLSGIKSFLKYLKKRK 106
           +I +  +  +S  ++ AFI   R         TQ  +   ++ R+LS + S  KYL +  
Sbjct: 66  EIPLSVLENMSKKDMEAFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLYKYLTEEV 125

Query: 107 ITTESNILNMRNLKKSNSL--------PRALNEKQALTLVDNVLLHTSHETKWID----- 153
              +      RN+ K  +          RA N KQ L L D     T    ++ID     
Sbjct: 126 ENEQGEPYFYRNVMKKVATKKKKETLAARAENIKQKLFLGD----ETEGFLQYIDREYPK 181

Query: 154 --------------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                          R+ AI+ LL   G+R+SEA++L  ++I      + +  KG K   
Sbjct: 182 KLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLKDINLKMMVIEVTRKGGKRDS 241

Query: 200 VPLLPSVRKAILEYYDLCP--FDLNLNIQLPLFRGIRGKP--LNPGVFQRYIRQLRRYLG 255
           V +       + EY  +    +              RG P  ++    ++ + +      
Sbjct: 242 VNVAAFAMSYLEEYLSIRSKRYKAEKTDTAFFLTEYRGNPNRIDASSVEKMVAKYSE--D 299

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGD 308
             +  T H LRH+ AT L         +   LGH     T +YT++     KN  D
Sbjct: 300 FKVRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 355


>gi|323651111|ref|YP_004243538.1| phage integrase [Bacillus subtilis subsp. natto]
 gi|323461534|dbj|BAJ76951.1| phage integrase [Bacillus subtilis subsp. natto]
          Length = 189

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 9/156 (5%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMD------DQSTLRIQGKGDKIRIVPLLPS 205
           ++ R++    +      RIS+ + L  ++++D      D   LR + K  K   + +   
Sbjct: 23  MNERDAVYFIIGINTAFRISDLIHLKFKDVIDEKMKPLDYFELR-ETKTGKHNKIAMTKG 81

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           VRKAI++Y     ++ NL+  L   +  + KP+      R I+     +GL  +   H+L
Sbjct: 82  VRKAIVQYVQ-HRYEGNLDHYLFTGQKSKDKPITRVTAWRNIKAAADTIGLK-NIGTHSL 139

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R +F  H   NG D+  +  +  H     T  Y  +
Sbjct: 140 RKTFGYHQYKNGTDITLLMDMFNHSSAGITLRYIGI 175


>gi|220926705|ref|YP_002502007.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|219951312|gb|ACL61704.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 327

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 32/65 (49%)

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           P+    F+ + R+  R  GL      H  RH+  T  +   G+L+  Q +LGH R+ TT 
Sbjct: 227 PITDNGFKTHWRRCIREAGLAEGFRRHDTRHTAGTRYVRATGNLKGAQKLLGHSRIETTT 286

Query: 297 IYTNV 301
            Y +V
Sbjct: 287 RYAHV 291


>gi|154500417|ref|ZP_02038455.1| hypothetical protein BACCAP_04089 [Bacteroides capillosus ATCC
           29799]
 gi|150270769|gb|EDM98061.1| hypothetical protein BACCAP_04089 [Bacteroides capillosus ATCC
           29799]
          Length = 231

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNV 301
           H LRH+FAT  L NG D++++ S+LGH+    T + YT+ 
Sbjct: 172 HDLRHTFATTALQNGVDVKTVSSMLGHYDAGFTLRTYTHA 211


>gi|26553744|ref|NP_757678.1| recombinase [Mycoplasma penetrans HF-2]
 gi|26453751|dbj|BAC44082.1| recombinase [Mycoplasma penetrans HF-2]
          Length = 253

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 113/286 (39%), Gaps = 49/286 (17%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E LK+ + WL N+   +G S  T++ Y C    FLI                     +  
Sbjct: 2   EKLKKFKEWLINI---KGYSPKTIEVY-CKYAHFLI-------------------ENDEN 38

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            FI+  + +   + S +  LS  K + ++      T +     +   KK   +   +   
Sbjct: 39  YFITMEKYKHTTNNSKRIILSSFKKYYEF------TDDKRREEIELPKKEKRVQDYVTYD 92

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + + ++D +  H S           AI+ LL+  G+R +E L++   +I  ++  +RI G
Sbjct: 93  EYIKIIDFIKNHKSSNMSL------AIIRLLFETGIRSAELLNIKTSDIYKNR--IRIYG 144

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K    R + +  S+ K + +   L       N+           P+      + +R L +
Sbjct: 145 KNRLERFIYVCDSLEKILNQ---LVKKRNKENVDKVF-------PITYKALYKRVRNLSK 194

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            +   LS   H  R  FATH +     +  I  ++GH  ++TT+ Y
Sbjct: 195 KVNKKLS--PHMFRRGFATHCIGKNIGIYQISLMMGHENINTTKNY 238


>gi|315608671|ref|ZP_07883651.1| integrase [Prevotella buccae ATCC 33574]
 gi|315249640|gb|EFU29649.1| integrase [Prevotella buccae ATCC 33574]
          Length = 409

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTN 300
            +Q  ++ LR   G+    T HT RH+FAT + L  G  + ++  +LGH  +  T+ Y  
Sbjct: 326 AYQSCLKALRLRTGISFPFTTHTARHTFATLITLEQGVPIETVSKMLGHTNVCMTERYAK 385

Query: 301 VN 302
           V 
Sbjct: 386 VT 387


>gi|307578631|gb|ADN62600.1| phage-related integrase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 206

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           F+   R+LR   GLP  T    +RH+ AT L + G     IQ +LGH         T+V 
Sbjct: 112 FKTAWRKLRTRAGLPKDTVPKVIRHTMATELRAAGVSAEDIQGMLGHRAYGGI---TDVY 168

Query: 303 SKNGGDWMME 312
           +K   D+M +
Sbjct: 169 AKYRPDYMAD 178


>gi|322433741|ref|YP_004215953.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321161468|gb|ADW67173.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 395

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 114/297 (38%), Gaps = 44/297 (14%)

Query: 49  FLAFYTEEKIT-IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL--KKR 105
           F+ F  E  IT ++ +   + TE   FIS     ++  +S  + +S +  F K+      
Sbjct: 103 FILFLNERGITDLENVTPKTVTE---FISW--ATEVDYKSSPQHISVLNGFFKWALRHGH 157

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
           + +    I      K++  LPR    ++ +T++  +           ++R  AI+ +   
Sbjct: 158 RKSGSPVIAKFHGKKRAQHLPRPYTAEE-MTIIWALAEERG------NSRLRAIIAIGEE 210

Query: 166 CGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY----DLCPF 219
            GLR+ E   L  +++  +  +  +R+  K D  R  P      + ILE+     D C  
Sbjct: 211 SGLRLGEICRLREEDVDLVGHRLFVRLPNKTDCERWAPFSDKTARYILEWRSERDDKCGH 270

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST----------TAHTLRHSF 269
           D        LF    G P       R +   R +  +   T          + H LRH+ 
Sbjct: 271 DF-------LFHNSLGDPPRADTMHREL--CRTFCKIHGGTQVNPSGLDEWSTHRLRHTM 321

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
           A+ L S G    +I +  G    S+   YT V++    D     YDQ      +K K
Sbjct: 322 ASRLASGGASFPTIMAAGGWKSPSSMMHYTKVDA----DQARHGYDQAMRRAEEKSK 374


>gi|260170847|ref|ZP_05757259.1| integrase [Bacteroides sp. D2]
          Length = 245

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (53%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           F   ++ L R L L    T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 157 FNNCLKDLARALHLQSPVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 212


>gi|239907685|ref|YP_002954426.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239797551|dbj|BAH76540.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 348

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 102/242 (42%), Gaps = 30/242 (12%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           I ++ Y EI   + K         +  R LS +K+  ++  K+ +  E N L  R+ KK+
Sbjct: 112 IDEIRYDEILTIVGKAYADH-SPVTRGRYLSYLKTVFQFGVKQDLI-EKNPL--RHWKKA 167

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA-ILYLLYGCGLRI--SEALSLTPQ 179
              PR       LT+ D +      + K + A + A  + + +  G+R   SE  +L   
Sbjct: 168 KEHPRDTK----LTVADLM------KIKAVAAPHLAWAIEIAWNLGVRTGESELFALKWA 217

Query: 180 NIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           ++   QST+++   K    R++P+ P     + E       +  +           G+P+
Sbjct: 218 DVDWAQSTVKVFATKTKSARVIPISPEFMARLKEMQGRAKTEYLIEYA--------GRPV 269

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH--FRLSTTQ 296
               F+   R   +   +P     + +RH  AT LL  GGDL ++  ++GH    ++  Q
Sbjct: 270 KQ--FRMSFRSACKRAEIPYHVVLYDIRHLLATTLLQEGGDLSAVSKLMGHSSVHMTANQ 327

Query: 297 IY 298
            Y
Sbjct: 328 YY 329


>gi|332881987|ref|ZP_08449627.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332680067|gb|EGJ53024.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 215

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGDWMMEI 313
           H  RH+F T  L+ G  L S+  ++GH  + TTQIY  + N K   D  MEI
Sbjct: 155 HWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKD--MEI 204


>gi|328542226|ref|YP_004302335.1| integrase family protein [polymorphum gilvum SL003B-26A1]
 gi|326411976|gb|ADZ69039.1| Integrase family protein [Polymorphum gilvum SL003B-26A1]
          Length = 194

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 61/154 (39%), Gaps = 27/154 (17%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           +L   G R+SEAL+LT  +I             D    V +  S++K  L  +   P   
Sbjct: 40  VLKDTGCRLSEALALTADHI-------------DLRAGVIVFRSLKKRRLGVHRAVPVSP 86

Query: 222 NLNIQLPLFRGIRGK-------------PLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRH 267
            +  +L    G+R               P +     R ++++    G+     TA  LRH
Sbjct: 87  TVLAELDRVHGVRAAQGAPSGGTSVRLWPWHRMTGHRRVKEVMEAAGVSGPHATAKGLRH 146

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            F    L  G  +  +Q  LGH +L+TT IY + 
Sbjct: 147 GFGVAALERGIPITLLQKWLGHAKLATTAIYGDA 180


>gi|294645948|ref|ZP_06723617.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|292638709|gb|EFF57058.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
          Length = 239

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (53%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           F   ++ L R L L    T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 151 FNNSLKDLARTLHLQSPVTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIY 206


>gi|251782571|ref|YP_002996873.1| integrase [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
 gi|242391200|dbj|BAH81659.1| integrase [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
          Length = 362

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +F+   G  + P + ++++ Q+ +   LP   T H  RH+ A+ L  +G  L+ +Q  LG
Sbjct: 268 MFQSESGGIMTPSLPRKWLLQIIKGTDLP-QITIHGFRHTHASLLFESGLSLKQVQHRLG 326

Query: 289 HFRLSTT-QIYTNV 301
           H  L TT  +YT++
Sbjct: 327 HGDLQTTMNVYTHI 340


>gi|197302205|ref|ZP_03167264.1| hypothetical protein RUMLAC_00932 [Ruminococcus lactaris ATCC
           29176]
 gi|197298636|gb|EDY33177.1| hypothetical protein RUMLAC_00932 [Ruminococcus lactaris ATCC
           29176]
          Length = 212

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS-NGGDLRSIQSILGHFRLS 293
           G PL  G  +  +++L     LP     H+ RHS  T+ L  NGGD++++Q   GH +++
Sbjct: 78  GLPLGDGAIRGPLKKLIEDYNLP-PVVFHSFRHSSVTYKLKLNGGDIKAVQGNSGHAQVN 136

Query: 294 -TTQIYTNV 301
             T +Y+++
Sbjct: 137 MVTDVYSHI 145


>gi|19746280|ref|NP_607416.1| integrase [Streptococcus pyogenes MGAS8232]
 gi|19748468|gb|AAL97915.1| integrase [Streptococcus pyogenes MGAS8232]
          Length = 362

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +F+   G  + P + ++++ Q+ +   LP   T H  RH+ A+ L  +G  L+ +Q  LG
Sbjct: 268 MFQSESGGIMTPSLPRKWLLQIIKGTDLP-QITIHGFRHTHASLLFESGLSLKQVQHRLG 326

Query: 289 HFRLSTT-QIYTNV 301
           H  L TT  +YT++
Sbjct: 327 HGDLQTTMNVYTHI 340


>gi|294790582|ref|ZP_06755740.1| DNA integration/recombination/inversion protein [Scardovia
           inopinata F0304]
 gi|294458479|gb|EFG26832.1| DNA integration/recombination/inversion protein [Scardovia
           inopinata F0304]
          Length = 320

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 63/148 (42%), Gaps = 26/148 (17%)

Query: 167 GLRISEALSLTPQNI------MDDQSTLRIQGKGD------------KIRIVPLLPSVRK 208
           GLR +E L LT Q+I      +D   T   + K              KI I   L    K
Sbjct: 156 GLRFAEVLGLTVQDINFKQLVIDVNKTWNYKTKAGGFAPTKNDSSRRKIHIDWQLALQLK 215

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
             ++  D C    +L     LF  I+GK ++       +  L    G+P+  T H LRH+
Sbjct: 216 EFIDTSDHCEQSDSL-----LF--IQGKRIHNSTVNSRLESLCIEAGIPV-ITFHGLRHT 267

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            A+ LL  G  + S+   LGH  ++TTQ
Sbjct: 268 HASLLLYKGVSIASVAKRLGHANMATTQ 295


>gi|258515457|ref|YP_003191679.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257779162|gb|ACV63056.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 324

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 70/162 (43%), Gaps = 20/162 (12%)

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKW--IDARNSAILYLLYGCGLRISEALSLTPQNI 181
           ++P  L+ ++  +L   +  +   + KW         I  L Y CGLR++E  +L  +++
Sbjct: 106 TIPHILSTEELKSLYHVIDSYLPDKEKWQRFSIEYQVIFRLYYCCGLRLAEVCNLKVKDV 165

Query: 182 MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLP----LFRG-IR 234
             +   L+I Q KG+K R+V +   V        DLC  +   +   LP     F G ++
Sbjct: 166 NLEDGILKIVQSKGNKDRLVYMADDVA-------DLCRNYHKRMVSLLPGSEWFFPGRVQ 218

Query: 235 GKPLNPGVFQRYIRQLRRYL----GLPLSTTAHTLRHSFATH 272
           G+P+      +  +Q             + T H LRH+F  +
Sbjct: 219 GQPIRKTSMYKKFKQFWNMTPFADACDKAPTIHALRHTFVVN 260


>gi|218133921|ref|ZP_03462725.1| hypothetical protein BACPEC_01810 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991296|gb|EEC57302.1| hypothetical protein BACPEC_01810 [Bacteroides pectinophilus ATCC
           43243]
          Length = 413

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 73/190 (38%), Gaps = 46/190 (24%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------------------- 193
           ++    L G G RI EA+ +  ++I  ++ T+ I                          
Sbjct: 206 ASFFKFLLGTGCRIGEAIGIRWEDIDLEKRTISINHSVVYYSREFKEHPICSFAVSLPKT 265

Query: 194 GDKIRIVPLLPSVRKAI-LEYYDLCPFDLNLNI----QLPLFRGIRGKPLNPGVFQRYIR 248
              IR +P++ +V  A+ +E  D      N  +    +  +F    G   NP    R I+
Sbjct: 266 EAGIRTIPMMDTVYDALQMELDDQKEHGFNETVIDGMKGFIFMNRFGNIHNPQAVNRAIK 325

Query: 249 ----------------QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                           Q R  + +P   + H LRH+F +    N  +L+ IQSI+GH  +
Sbjct: 326 RIYEAHNAEEVVKAAKQHREPVIIP-HFSCHHLRHTFCSRFCENETNLKVIQSIMGHANI 384

Query: 293 STT-QIYTNV 301
            TT  IY  V
Sbjct: 385 ETTMDIYAEV 394


>gi|295090531|emb|CBK76638.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 364

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 24/180 (13%)

Query: 131 EKQALTLVDNVLLHTSHET--KWIDARNSAILYL----LYGCGLRISEALSLTPQNIMDD 184
           +KQ  T +D V+    +E   + +   N+   Y     L   G RISE L +  +N+   
Sbjct: 179 KKQQKTYLDTVISERDYEKLKRRLKKDNNYYWYFVVRFLGATGARISELLQIKVENLKSG 238

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD-----LNLNIQLPLFRGIRGKPLN 239
              L +  KG KIR + L   +    L +++          LN + Q+   RGI  +   
Sbjct: 239 H--LDLYSKGGKIRRLYLPRRLCDEALPWFESRGMKSGFIFLNHHGQVISARGIAVQ--- 293

Query: 240 PGVFQRYIRQLR-RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                  ++QL  RY   P +   H+ RH FA + L    D+  +  ++GH  + TT+IY
Sbjct: 294 -------LKQLAVRYRIDPGTVYPHSFRHRFAKNFLKKFNDISLLADLMGHDSIETTRIY 346


>gi|115374695|ref|ZP_01461972.1| putative bacteriophage integrase [Stigmatella aurantiaca DW4/3-1]
 gi|310822738|ref|YP_003955096.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115368266|gb|EAU67224.1| putative bacteriophage integrase [Stigmatella aurantiaca DW4/3-1]
 gi|309395810|gb|ADO73269.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 406

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTA---HTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           G+PL  G   + +R+     G+         H LRH++A+HL   G  L+ IQ ++GH  
Sbjct: 303 GQPLTAGKMAQPLRRALHRAGISREEGRIGWHDLRHTYASHLAMRGIPLKVIQELMGHVT 362

Query: 292 LSTTQIYTNVN 302
           +  T+ Y +++
Sbjct: 363 IEMTERYAHLS 373


>gi|332885104|gb|EGK05356.1| hypothetical protein HMPREF9456_02855 [Dysgonomonas mossii DSM
           22836]
          Length = 334

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%)

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           L LP   T + +RHS+AT +L  G  +  I   +GH  + TTQIY
Sbjct: 249 LHLPGKLTTYVMRHSWATLMLEAGKSVEIISQCMGHTSIRTTQIY 293


>gi|319651080|ref|ZP_08005214.1| hypothetical protein HMPREF1013_01825 [Bacillus sp. 2_A_57_CT2]
 gi|317397250|gb|EFV77954.1| hypothetical protein HMPREF1013_01825 [Bacillus sp. 2_A_57_CT2]
          Length = 473

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 26/165 (15%)

Query: 158 AILYLLYGCGLRISEALSLTP----QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
           A++ ++   G+R++EAL+L      +++M       +  K +  R +P+   V  AI EY
Sbjct: 189 ALITVIRHTGIRLTEALNLKADCMNRDLMKKHLLEIVSPKNETERFIPVNKDVAVAI-EY 247

Query: 214 YDLCPFDLNL-----------------NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
             LC     L                 N  +PL +    + L     +R+  ++R   G 
Sbjct: 248 --LCKASEELRSKLKTEKIFYHHQPQKNRYIPLLQYEARRFLKKKFIERF--EIRDSNGE 303

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               T H  RH   T LL+NG     +   LGH  + +T++Y  V
Sbjct: 304 LAVFTYHNFRHQIGTDLLNNGMSAFEVMQYLGHESMHSTRLYAKV 348


>gi|295091004|emb|CBK77111.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 444

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 7/66 (10%)

Query: 242 VFQRYIR-----QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT- 295
           +FQR IR     Q    L LP+  T H LRH+ AT L+ +G D+R++   LGH   STT 
Sbjct: 360 IFQRIIRNYNACQKDEALRLPV-ITLHGLRHTAATLLIVSGVDIRTVSGRLGHSCASTTL 418

Query: 296 QIYTNV 301
            IY++ 
Sbjct: 419 NIYSHA 424


>gi|291166299|gb|EFE28345.1| site-specific recombinase, phage integrase family [Filifactor
           alocis ATCC 35896]
          Length = 432

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN 302
           HTLRH+F ++LLS G   + +Q +LGH  ++TT  IY + +
Sbjct: 374 HTLRHTFTSNLLSYGAAPKEVQELLGHADVTTTMNIYAHAS 414


>gi|160946220|ref|ZP_02093431.1| hypothetical protein PEPMIC_00182 [Parvimonas micra ATCC 33270]
 gi|158447743|gb|EDP24738.1| hypothetical protein PEPMIC_00182 [Parvimonas micra ATCC 33270]
          Length = 173

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 29/43 (67%)

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           LP  TT HTLRH+F T++ + G + +++Q ++GH  ++ T  Y
Sbjct: 113 LPTVTTPHTLRHTFCTNMANAGMNSKALQYLMGHANITMTLNY 155


>gi|326336802|ref|ZP_08202957.1| integrase [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691030|gb|EGD33014.1| integrase [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 324

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGDWMMEI 313
           H  RH+F T  L+ G  L S+  ++GH  + TTQIY  + N K   D  MEI
Sbjct: 264 HWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKD--MEI 313


>gi|313157859|gb|EFR57266.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 422

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 254 LGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +G+    T H+ RH+FAT + LS G  + +I  +LGH  + TTQIY  +
Sbjct: 338 IGIMKQITFHSARHTFATTITLSQGVAIETISKLLGHRNIRTTQIYATI 386


>gi|301307723|ref|ZP_07213680.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300834397|gb|EFK65010.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 315

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 11/138 (7%)

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           CG+  ++   LT  N+  ++   R +  G  IR V +   +R+ I +Y D     L    
Sbjct: 157 CGMPFADMARLTTANLYGEEIVYRRKKTGTLIR-VGITAGMRRLINKYADASSPYL---- 211

Query: 226 QLPLFRGIR--GKPLNPGVFQRY---IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
             P+    R  G      + + Y   ++++ R L  P+  T++  RH++AT+ L     L
Sbjct: 212 -FPILSPGREVGHEEYKAILRSYNNSLKKIGRALSRPIHLTSYVFRHTWATNALRKQVPL 270

Query: 281 RSIQSILGHFRLSTTQIY 298
             I   LGH    TT+ Y
Sbjct: 271 SIISQALGHTSEKTTRFY 288


>gi|327197611|ref|YP_004301302.1| gp26 [Brochothrix phage NF5]
 gi|296245434|gb|ADH03048.1| gp26 [Brochothrix phage NF5]
          Length = 397

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 70/173 (40%), Gaps = 35/173 (20%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD--------------KIRIV 200
           RN AI+  ++  G R +E + LT  +I  D S + I    D                RI+
Sbjct: 212 RNCAIVIAIH-TGARYAEIIGLTWDDIDFDNSLITINKTWDIHFSHDFSTTKNESSNRII 270

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-----------PLNPGVFQRYIRQ 249
            +  +++  +  Y            +L L +GI  K           PL       Y++ 
Sbjct: 271 YIDDTLKNYLKTYRTKQK-------ELFLLKGISNKLNLVVSQEETHPLLNKSINVYLKN 323

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
               L +P   T H LRHS    L+  G D++ I   LGH  +STT  IYT++
Sbjct: 324 TCDQLDVP-KITLHALRHSHTVQLIEAGVDIKYISLRLGHADISTTLSIYTHI 375


>gi|319762191|ref|YP_004126128.1| integrase family protein [Alicycliphilus denitrificans BC]
 gi|317116752|gb|ADU99240.1| integrase family protein [Alicycliphilus denitrificans BC]
          Length = 414

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 14/152 (9%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYD 215
           ++ +    GLR  E   L   +I  ++  L+++    K  K R +PL       +  + D
Sbjct: 260 MILVTINTGLRRGELFKLKRSDIDMEKRMLKVRAAAAKSGKSRFIPLNDEAATMLTRWMD 319

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLN--PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
             P +   + +L +F G  G PL      +   +R ++           H +RH FA+ L
Sbjct: 320 QHPAE---DEEL-VFPGKDGAPLTNVDSAWGSIVRAVKLK-----DFHWHDMRHHFASRL 370

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +  G DL +++ +LGH  L  T  Y ++  ++
Sbjct: 371 VMAGVDLNTVRELLGHADLKMTLRYAHLAPEH 402


>gi|296051604|ref|YP_003632278.1| integrase family protein [Planctomyces limnophilus DSM 3776]
 gi|296016841|gb|ADG70079.1| integrase family protein [Planctomyces limnophilus DSM 3776]
          Length = 283

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 4/101 (3%)

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           +V   +LEY  L   D     + PLF   +GKP       +  R+ R   GL      + 
Sbjct: 177 AVGDKLLEYLRLAIGD---RTEGPLFLTSQGKPWTSARLSQEFRRTRERAGLSKDLVLYL 233

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            RH  AT L     DL +    LGH  L+TT+ Y ++++K 
Sbjct: 234 TRHEHATQLCEK-LDLNAAAEALGHASLNTTRRYLHLSAKK 273


>gi|255012644|ref|ZP_05284770.1| site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 373

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 21/151 (13%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRIVPLLPSVRKAI--LEYY 214
           A L+  + CGLRIS+  +L  +++  +     R+Q    K +    LP   +AI  L   
Sbjct: 219 AFLFCCF-CGLRISDLTALRWEDMQKEGNDKFRLQIIQRKTKEAIYLPLSEEAIKYLPAR 277

Query: 215 DLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           +     L L   LP    + + ++G  L  G+  + +             T H  RH+FA
Sbjct: 278 ENENDRLGLIFHLPSLTIICQVLKGWTLAAGIKNKKV-------------TFHVSRHTFA 324

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T  L+ G DL ++  +LGH  + +TQ+Y  +
Sbjct: 325 TLSLALGIDLYTVCKLLGHKNIISTQVYAKI 355


>gi|229176444|ref|ZP_04303879.1| Transposition regulatory protein TnpB [Bacillus cereus MM3]
 gi|228607026|gb|EEK64413.1| Transposition regulatory protein TnpB [Bacillus cereus MM3]
          Length = 704

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 22/150 (14%)

Query: 159 ILYLLYGCGLRISEALSLTPQ---------NIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           ++++ +  GLRIS+ L LT           +I+ D     +QG   +I I   L  +   
Sbjct: 385 VVWVAFKTGLRISDVLELTTDCLVQLNGKYSIVTDIEKTFVQGH--RIPIDEELAKILSV 442

Query: 210 ILEYYDLCPFDLNLNIQLPLF---RGIR-GKPLNPGVFQRYIRQLRRYL------GLPLS 259
           ++          N N +  +F   +GIR GKP   G  +R++ +L          G    
Sbjct: 443 LISNSKENSTQDN-NPEKYIFVRYQGIRKGKPYTQGWIRRHLNELAEKKNIVDENGDIFR 501

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
              H  RH++A  LL+ G D+ ++Q +L H
Sbjct: 502 FKTHQFRHTYAVKLLNGGADILTVQELLAH 531


>gi|239624491|ref|ZP_04667522.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520877|gb|EEQ60743.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 281

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 101/248 (40%), Gaps = 44/248 (17%)

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRN-------LKKSNSLPRALN-------- 130
           R++ +    + +F++YL   ++ T   ++  +        +  +NS+  ALN        
Sbjct: 26  RTIDKYCRDVAAFIQYLSPGEMVTREKVIEYKGYLQGSYKVSSANSMLAALNCFFHYKNW 85

Query: 131 -----------------EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG-CGLRISE 172
                            E++ LT  +   L T+    ++D +  A++    G  G+RISE
Sbjct: 86  DRYRVSQFKVQRHLMGGEERRLTKEEYARLVTT--ALYLDNQRLAMIMETIGNTGIRISE 143

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
              +T + +  D   + I  KG K R + L+  +R  +  Y   C    N     P+F  
Sbjct: 144 LPFITVEAL--DAGRVEIYNKG-KFRTIFLIEKLRCRLRGY---CR--ENGLTSGPVFVT 195

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
             G  +N       +++L    G+P      H LRH FA        DL  +  ILGH  
Sbjct: 196 SGGMAVNRSNIWAEMKRLCIKAGIPEQKVFPHNLRHLFAYTYYGVDKDLVHLADILGHSS 255

Query: 292 LSTTQIYT 299
           + TT+IYT
Sbjct: 256 VETTRIYT 263


>gi|160887483|ref|ZP_02068486.1| hypothetical protein BACOVA_05502 [Bacteroides ovatus ATCC 8483]
 gi|156107894|gb|EDO09639.1| hypothetical protein BACOVA_05502 [Bacteroides ovatus ATCC 8483]
          Length = 245

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (53%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           F   ++ L R L L    T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 157 FNNSLKDLARALHLQSPVTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIY 212


>gi|46448007|gb|AAS94663.1| molybdenum-pterin binding domain protein/site-specific recombinase,
           phage integrase family [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 403

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 16/139 (11%)

Query: 159 ILYLLYGCG-LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           + +LL+  G LR+ E L +  +  +D    L +  +G + R VPL   V   +L   D  
Sbjct: 37  LAFLLFRFGALRLGEVLGIDDEADVDRGHAL-LHVRGVQPRDVPLPEPVMAEVLRVLDD- 94

Query: 218 PFDLNLNIQLPLFRGIRGKPL--NPGVFQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLL 274
                     P+   +RG+ L  +PG  +R   +     G+P    +   LRHS A  LL
Sbjct: 95  ----------PMMFSLRGQVLRLDPGYLRRRFYERSGGCGIPRDHLSPRVLRHSRAIELL 144

Query: 275 SNGGDLRSIQSILGHFRLS 293
             G  L+ +Q +LGH  +S
Sbjct: 145 RGGVPLKVVQQVLGHQSVS 163


>gi|320455|pir||S31463 probable integrase/recombinase [similarity] - Bacteroides sp.
           transposon Tn4551
 gi|154970|gb|AAA27458.1| ORF-2 with homology to Tn21 tnpI gene; putative [Transposon Tn4551]
          Length = 282

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 78/177 (44%), Gaps = 21/177 (11%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            +IG    +  ++ I  F K +  R    E  I ++   +++ +LP  LN  +   ++D 
Sbjct: 98  HRIGSSHQRMIVASIDKFYKSIYGR----ELKIKHLYPSRRTFALPNCLNIDEVKRIIDG 153

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRI 199
                       + ++  ++ +LYG GLR+SE ++L   +I   +  +RI + KG+K R+
Sbjct: 154 TE----------NIKHRCMIKMLYGSGLRLSELINLEIADIDSARMLIRIVKSKGNKDRV 203

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           V L  S+   +   Y L   D+       LF G  G P +    Q  ++      G+
Sbjct: 204 VTLPESILTDLRTCYILHKPDVY------LFEGQWGGPYSAKSVQMVVKNAASRAGI 254


>gi|303327306|ref|ZP_07357748.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
 gi|302863294|gb|EFL86226.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
          Length = 359

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 18/145 (12%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQ-GK-GDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
           GLR++E L+L   +I   Q  +R++ GK G++   +P     +    E  +L P D +  
Sbjct: 211 GLRLNEILNLRGNDINISQGIMRVRDGKAGERTAYIP-----KNFEKELKNLIPADNSAF 265

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-------HTLRHSFATHLLSNG 277
               LF G +G+ L+  V      +     GL  ST         HT RH+F + L   G
Sbjct: 266 ----LFTGSKGQRLSSNVTSNAFARFMEDTGLNGSTVDSEHKIVFHTFRHTFCSWLAIEG 321

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVN 302
             L +I  + GH  +S T+ Y  ++
Sbjct: 322 VPLFTIARLAGHKTISMTERYAKLS 346


>gi|50914372|ref|YP_060344.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes MGAS10394]
 gi|50903446|gb|AAT87161.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes MGAS10394]
          Length = 374

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +F+   G  + P + ++++ Q+ +   LP   T H  RH+ A+ L  +G  L+ +Q  LG
Sbjct: 280 MFQSESGGIMTPSLPRKWLLQIIKGTDLP-QITIHGFRHTHASLLFESGLSLKQVQHRLG 338

Query: 289 HFRLSTT-QIYTNV 301
           H  L TT  +YT++
Sbjct: 339 HGDLQTTMNVYTHI 352


>gi|167755883|ref|ZP_02428010.1| hypothetical protein CLORAM_01400 [Clostridium ramosum DSM 1402]
 gi|237734851|ref|ZP_04565332.1| integrase [Mollicutes bacterium D7]
 gi|167704822|gb|EDS19401.1| hypothetical protein CLORAM_01400 [Clostridium ramosum DSM 1402]
 gi|229382179|gb|EEO32270.1| integrase [Coprobacillus sp. D7]
          Length = 309

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
              +T  HTLRHS+AT+ + N  D +S+  +LGH  + TT
Sbjct: 248 FDFNTNFHTLRHSYATNCVMNEVDTKSLSEMLGHSNVGTT 287


>gi|76799205|ref|ZP_00781383.1| integrase [Streptococcus agalactiae 18RS21]
 gi|76585441|gb|EAO62021.1| integrase [Streptococcus agalactiae 18RS21]
          Length = 382

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +F+   G  + P + ++++ Q+ +   LP   T H  RH+ A+ L  +G  L+ +Q  LG
Sbjct: 288 MFQSESGGIMTPSLPRKWLLQIIKGTDLP-QITVHGFRHTHASLLFESGLSLKQVQHRLG 346

Query: 289 HFRLSTT-QIYTNV 301
           H  L TT  +YT++
Sbjct: 347 HGDLQTTMNVYTHI 360


>gi|160934939|ref|ZP_02082325.1| hypothetical protein CLOLEP_03814 [Clostridium leptum DSM 753]
 gi|156866392|gb|EDO59764.1| hypothetical protein CLOLEP_03814 [Clostridium leptum DSM 753]
          Length = 345

 Score = 40.4 bits (93), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 10/64 (15%)

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IY 298
           P   QR+  +  R+         H LRHS A+ LL+NG  L+ IQ  LGH   STT  IY
Sbjct: 251 PAFIQRHGMKKMRF---------HDLRHSCASLLLANGVHLKQIQDWLGHSDFSTTANIY 301

Query: 299 TNVN 302
            +++
Sbjct: 302 AHLD 305


>gi|253579366|ref|ZP_04856636.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849464|gb|EES77424.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 315

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 96/238 (40%), Gaps = 57/238 (23%)

Query: 116 MRNLKKSNSLP----RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
           +R LKK++       RAL + +    ++ +  H  +E  W       +  ++ G GLR+ 
Sbjct: 71  LRELKKAHCFQSEKRRALTKPEQELFLNFLKTHPVYE-HWY-----PVFAVMIGTGLRVG 124

Query: 172 EALSL------TPQNIMDDQSTL-----RIQGKGD-------------KIRIVPLLPSVR 207
           E   L          ++D   TL     R +G                 +R VP+L  V+
Sbjct: 125 EVTGLRWCDIDMESGMIDVNYTLVYYDHRTEGSKSGCYFNVNTTKTPASMRQVPMLGFVK 184

Query: 208 KAILEYYDLCPFDLNLNIQLPL-------FRGIRGKPLNPGVFQRYIRQLRRYLG----- 255
           +A  E+      DL L+ ++ +       F    G+  +     + IR++ R        
Sbjct: 185 EA-FEHEKQKQEDLGLHCEVTIDGYTDFIFINRFGQAQHQATLNKAIRRIIRDCNDEQFL 243

Query: 256 --------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
                   LP   + H+LRH+F T +   G +++ IQ  LGH  +STT  IY +V  +
Sbjct: 244 HSDEPDVLLP-HFSCHSLRHTFTTRMCEAGVNIKVIQDALGHSDISTTLNIYADVTKE 300


>gi|255038916|ref|YP_003089537.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254951672|gb|ACT96372.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 411

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 11/155 (7%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           I++RN   L+  Y  G+  ++  SL   NI+DD+    I+ K  +     L P   + IL
Sbjct: 243 INSRN-YFLFSFYCRGINFTDLASLKWDNIVDDELEY-IRSKTKEEFRFKLHPEAMR-IL 299

Query: 212 EYYDLCPFDLNLNIQLPLF-------RGIRGKPLNPGV-FQRYIRQLRRYLGLPLSTTAH 263
           ++Y     + +     P+        + IR +         + +++L   LG+  + T +
Sbjct: 300 DFYRNLRGNSDAGYIFPILYKRHDSIQSIRYRKQKIRTRVNKDLQELGAILGIQKNLTTY 359

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             RHS+AT L  NG    +I   LGH  L TT IY
Sbjct: 360 VARHSYATTLRRNGVSKENIGRSLGHDSLKTTDIY 394


>gi|332983390|ref|YP_004464831.1| integrase family protein [Mahella australiensis 50-1 BON]
 gi|332701068|gb|AEE98009.1| integrase family protein [Mahella australiensis 50-1 BON]
          Length = 377

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 10/86 (11%)

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
            P+DL   +Q        GKP+NP     Y     + LG P+    H LRH+ A+ LL  
Sbjct: 279 APYDLVCCMQ-------DGKPINPESLSSYFADTTKRLGFPVRF--HDLRHTHASLLLKA 329

Query: 277 GGDLRSIQSILGHFRLSTT-QIYTNV 301
           G + + +   LGH  +  T   Y++V
Sbjct: 330 GINPKIVSERLGHNSIEITLNTYSHV 355


>gi|212692905|ref|ZP_03301033.1| hypothetical protein BACDOR_02405 [Bacteroides dorei DSM 17855]
 gi|212664527|gb|EEB25099.1| hypothetical protein BACDOR_02405 [Bacteroides dorei DSM 17855]
          Length = 446

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 15/150 (10%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE------ 212
            L+  + CGLR S+ L+L   ++  ++  L+ +    K+     L      ILE      
Sbjct: 268 FLFAFHACGLRFSDILTLQWMHVDLEKHKLKKKLYKGKVPHEIALNDAALKILEQWKMKN 327

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG-LPLSTTAHTLR 266
                 + L P D NL  +  L R +R     P   +  ++ L   +G L  + T H  R
Sbjct: 328 RSNRFVFALLPDDFNLADEEELNR-MRINKNTP--IKVSLKALGHKIGGLSFNLTMHVAR 384

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           H+FA   L+NG D+  +  +L H  +  T+
Sbjct: 385 HTFAVFALNNGVDVHKVSCLLAHSSVMVTE 414


>gi|89054027|ref|YP_509478.1| phage integrase [Jannaschia sp. CCS1]
 gi|88863576|gb|ABD54453.1| phage integrase [Jannaschia sp. CCS1]
          Length = 201

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 72/179 (40%), Gaps = 41/179 (22%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------GKGDK---IRIVPLL 203
           AR+  +   L+  G R SE + +T   +     TL I+       G G+     R VP+ 
Sbjct: 33  ARDRTLCETLHFTGCRPSELIEITAARVDLSGGTLAIRSLKKRRNGAGEVRVVFRTVPVP 92

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIR---------GKPLNPGV---FQRYIRQLR 251
           P       +Y D       LN       GIR         G+P+ P       R ++ + 
Sbjct: 93  P-------DYLD------TLNTA----HGIREAQKSPKRAGEPIWPISRVHVWRIVKGVM 135

Query: 252 RYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
              GLP +   T   LRH +  + + NG  L  +Q  LGH +LSTT IY +   K   D
Sbjct: 136 IEAGLPDAPQRTPKGLRHGYGINAIVNGIPLHMLQKWLGHAQLSTTTIYADAIGKEEQD 194


>gi|56414164|ref|YP_151239.1| DNA recombinase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197363087|ref|YP_002142724.1| DNA recombinase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56128421|gb|AAV77927.1| probable DNA recombinase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197094564|emb|CAR60085.1| probable DNA recombinase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 188

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 63/157 (40%), Gaps = 2/157 (1%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILEY 213
           RN  ++ + +  G R SE L L   +I      L I+   +      PLLP     +  +
Sbjct: 26  RNHCLILMAFIHGFRASELLGLRLSDIDLAGRQLYIRRLKNGFSTCHPLLPDEYNVLKSW 85

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                +         LF  +R  PL+   F   +R+  R   L ++   H LRH+    L
Sbjct: 86  LRARKYLEKGADGDWLFLSLRRHPLSRQQFFYILREAGRLAELTIAPHPHMLRHACGYAL 145

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNS-KNGGDW 309
              G D R IQ  LGH  +  T  YT  N+ +  G W
Sbjct: 146 ADKGIDTRLIQDYLGHRNIQHTVRYTASNAGRFHGIW 182


>gi|254883577|ref|ZP_05256287.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|254836370|gb|EET16679.1| integrase [Bacteroides sp. 4_3_47FAA]
          Length = 390

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 6/81 (7%)

Query: 227 LPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLR 281
           + LF   RGK    P N  +  R I+++ + L       + HT RH+ AT LL +   L 
Sbjct: 280 MRLFHRTRGKLFHMPSN-AICNRVIKRVYKKLFRSRKNISFHTGRHTAATLLLYHDTPLT 338

Query: 282 SIQSILGHFRLSTTQIYTNVN 302
           +I+ ILGH  + TT+IY ++N
Sbjct: 339 TIKEILGHTNIRTTEIYADIN 359


>gi|254820912|ref|ZP_05225913.1| phage-related integrase [Mycobacterium intracellulare ATCC 13950]
          Length = 403

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 238 LNPGVFQRYIRQLRRYL-GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             P + +R IR +R  + GLP   + H LRH  A+ L++ G D++++Q+ L H    TT
Sbjct: 293 CGPWIIERAIRDVRGGIEGLPEGFSFHDLRHYLASLLIARGCDVKTVQARLRHSSAKTT 351


>gi|71903698|ref|YP_280501.1| DNA integration/recombination/invertion protein [Streptococcus
           phage 6180.1]
 gi|71802793|gb|AAX72146.1| DNA integration/recombination/invertion protein [Streptococcus
           phage 6180.1]
          Length = 374

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +F+   G  + P + ++++ Q+ +   LP   T H  RH+ A+ L  +G  L+ +Q  LG
Sbjct: 280 MFQSESGGIMTPSLPRKWLLQIIKGTDLP-QITIHGFRHTHASLLFESGLSLKQVQHRLG 338

Query: 289 HFRLSTT-QIYTNV 301
           H  L TT  +YT++
Sbjct: 339 HGDLQTTMNVYTHI 352


>gi|319936510|ref|ZP_08010925.1| integrase [Coprobacillus sp. 29_1]
 gi|319808402|gb|EFW04957.1| integrase [Coprobacillus sp. 29_1]
          Length = 391

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 89/208 (42%), Gaps = 29/208 (13%)

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           N  + K S  +     EK ALT      L +  +T  +  ++   + +L   GLRISE  
Sbjct: 165 NPFDFKLSEVIENDTKEKVALTEEQEQALLSFIKTDNVYHKHYDDVLILLKTGLRISELC 224

Query: 175 SLTPQNI-------MDDQSTLRIQGKG---------DKIRIVPL----LPSVRKAILEYY 214
            LT  +I       + D   L+ + +G           IR VPL    + + ++ + +  
Sbjct: 225 GLTVADIDFKNEVVIIDHQLLKSKEQGYYIETPKTKSGIRQVPLSRETIQTFQRVMKKRP 284

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ----RYIRQLRRYLG---LPLSTTAHTLRH 267
              PF ++      LF   +GKP     +     R +++  +Y     LP   T HTLRH
Sbjct: 285 KAEPFVIDGRGNF-LFVNHKGKPKVAIDYNMLVVRMVKKYNKYHKDNPLP-HITPHTLRH 342

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTT 295
           +F T L S   + + +Q I+GH  +S T
Sbjct: 343 TFCTRLASKNMNPKDLQYIMGHSNISIT 370


>gi|300310209|ref|YP_003774301.1| site-specific phage recombinase/integrase [Herbaspirillum
           seropedicae SmR1]
 gi|300072994|gb|ADJ62393.1| site-specific phage recombinase/integrase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 325

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 5/79 (6%)

Query: 227 LPLFRGIRGKPLNP----GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
           +P+ R IR     P        ++ R  R+ +GL      H LRHS A+ +++ G DL +
Sbjct: 231 VPMHRKIRCCAKVPLPDQSRISKHFRDARKLVGLDW-LHFHDLRHSAASSMINEGVDLYT 289

Query: 283 IQSILGHFRLSTTQIYTNV 301
           + ++LGH   S+T+ Y ++
Sbjct: 290 VGAVLGHKTASSTKRYAHL 308


>gi|189462153|ref|ZP_03010938.1| hypothetical protein BACCOP_02835 [Bacteroides coprocola DSM 17136]
 gi|189431126|gb|EDV00111.1| hypothetical protein BACCOP_02835 [Bacteroides coprocola DSM 17136]
          Length = 386

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 25/47 (53%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           G+    + H  RH FA   LS G  + S+  ILGH  + TTQIY + 
Sbjct: 335 GITKKISFHCSRHGFAILALSKGMPIESVSRILGHTNIKTTQIYASA 381


>gi|325860441|ref|ZP_08173553.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325482099|gb|EGC85120.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 414

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 23/40 (57%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           H  RH+F T  LS G  + SI  ++GH  +S TQIY  V 
Sbjct: 350 HMARHTFGTMSLSAGIPIESIAKMMGHASISGTQIYAQVT 389


>gi|167620936|ref|ZP_02389567.1| site-specific recombinase, phage integrase family protein
           [Burkholderia thailandensis Bt4]
          Length = 141

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 10/137 (7%)

Query: 174 LSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPL 229
           ++L  + +  ++S LR++    K  K R+VPL  +   A+ +  D      + +    P 
Sbjct: 1   MALDWRRVDFERSFLRLEAEHTKNGKRRVVPLNSAALSALRDQRDWVEGKCSGSEWVFPA 60

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           + G R + L  G      R     +G+  +   H LRH+FA+ L+  G  L  ++ +LGH
Sbjct: 61  WSGKRIQTLQKGFNAACAR-----VGIE-NFRIHDLRHTFASWLVMEGVSLYVVKDLLGH 114

Query: 290 FRLSTTQIYTNVNSKNG 306
             +S T+ Y +++   G
Sbjct: 115 SSISVTERYAHLSPDQG 131


>gi|163782731|ref|ZP_02177727.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881852|gb|EDP75360.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 351

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 109/263 (41%), Gaps = 64/263 (24%)

Query: 78  RRTQKIGDRSLKRSLSGIKSFL--KYLKKR--------KITTESNILN--MRNLKKSN-- 123
           RR +++ +    R LS I +FL   Y KKR         I  E NIL   +R  K++   
Sbjct: 91  RRARRLEEFFGSRKLSQISTFLVESYKKKRLEEGVKPQTINMELNILGSILRRAKEAGLF 150

Query: 124 --SLP-------------RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
              LP             R L+E++A  L+           +W       +++ L   GL
Sbjct: 151 DGELPKIEKFRNADRERLRFLSEREAQRLISAC-------PEWF---KPVVIFAL-NTGL 199

Query: 169 RISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAI--LE-----YYDLCP 218
           R  E  SL  +++  ++  + ++    K  K+R +P+  +V+K +  LE     Y     
Sbjct: 200 RAGEIFSLRWEDVDFERGVITVREASSKSGKVRKLPMNATVKKLLQGLERKEHGYIFTNR 259

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
           F L    +   +R +          +  I+  R           H LRH+FA+ +  N  
Sbjct: 260 FGLPYKYEDKTYRRV----FKTACEKAGIKDFR----------FHDLRHTFASWVAMNSK 305

Query: 279 DLRSIQSILGHFRLSTTQIYTNV 301
           D+ ++Q++LGH   S T+ Y ++
Sbjct: 306 DIYAVQNLLGHSSPSVTKRYAHL 328


>gi|154244484|ref|YP_001415442.1| integrase domain-containing protein [Xanthobacter autotrophicus
           Py2]
 gi|154246966|ref|YP_001417924.1| integrase domain-containing protein [Xanthobacter autotrophicus
           Py2]
 gi|154158569|gb|ABS65785.1| integrase domain protein SAM domain protein [Xanthobacter
           autotrophicus Py2]
 gi|154161051|gb|ABS68267.1| integrase domain protein SAM domain protein [Xanthobacter
           autotrophicus Py2]
          Length = 464

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 28/93 (30%)

Query: 235 GKPLNPG----VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN-------------- 276
           G P+ P     +F R   + R + GL ++ + H LRH+FA H+L+               
Sbjct: 347 GMPVQPNSWEVIFARASSRCRSF-GLDINISPHQLRHTFAVHMLAMLIQHRIRDAALPAG 405

Query: 277 ---------GGDLRSIQSILGHFRLSTTQIYTN 300
                    G  L+ +Q +LGH  L+TT IY +
Sbjct: 406 SMEGYRQMLGDPLQQVQRLLGHASLTTTYIYLD 438


>gi|158320318|ref|YP_001512825.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
 gi|158140517|gb|ABW18829.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
          Length = 380

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G  ++P  +     +L + +    +   H LRH+ AT LL  G D + IQ+ LGH  ++T
Sbjct: 296 GTYVHPNYYTVKFNKLLKKVNFDRNIRFHDLRHTNATLLLQQGIDFKVIQTRLGHSDINT 355

Query: 295 T-QIYTNVN 302
           T  IY++VN
Sbjct: 356 TLNIYSHVN 364


>gi|2597890|emb|CAA05031.1| tyrosine recombinase IntI2 [Escherichia coli]
 gi|28394466|gb|AAO38250.1| inactive tyrosine recombinase [Escherichia coli]
 gi|50262994|gb|AAT72896.1| truncated IntI2 [Shigella sonnei]
 gi|76008825|gb|ABA38889.1| IntI2 [Pseudomonas aeruginosa]
 gi|91680581|emb|CAJ20143.1| tyrosine recombinase [Salmonella enterica]
 gi|125380578|gb|ABN41475.1| truncated integrase [Shigella sonnei]
 gi|296881198|gb|ADH82139.1| truncated IntI2 [Klebsiella pneumoniae]
 gi|296881204|gb|ADH82144.1| truncated IntI2 [Klebsiella pneumoniae]
 gi|296881210|gb|ADH82149.1| truncated IntI2 [Escherichia coli]
 gi|323974157|gb|EGB69290.1| integron integrase [Escherichia coli TW10509]
 gi|332750918|gb|EGJ81324.1| putative integrase [Shigella flexneri K-671]
 gi|332997203|gb|EGK16819.1| hypothetical protein SFK218_4851 [Shigella flexneri K-218]
 gi|333013462|gb|EGK32833.1| hypothetical protein SFK304_4650 [Shigella flexneri K-304]
          Length = 178

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 5/61 (8%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR--IVP--LLPSV 206
           +D RN  I  LLYG GLRI+E L L  ++   D   + +  GKG K R  ++P  L+P++
Sbjct: 118 MDTRNQVIFTLLYGAGLRINECLRLRVKDFDFDNGCITVHDGKGGKSRNSLLPTRLIPAI 177

Query: 207 R 207
           +
Sbjct: 178 K 178


>gi|304382315|ref|ZP_07364820.1| integrase [Prevotella marshii DSM 16973]
 gi|304336554|gb|EFM02785.1| integrase [Prevotella marshii DSM 16973]
          Length = 430

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           ++ + +  G+    T H  RH+ AT + LSNG  + S+  +LGH  +++TQIY  + ++ 
Sbjct: 347 LKTIIKKCGIDKHVTWHVARHTMATVVCLSNGMPIESVSCLLGHKCITSTQIYAKITNEK 406

Query: 306 GG 307
            G
Sbjct: 407 LG 408


>gi|254438028|ref|ZP_05051522.1| hypothetical protein OA307_2898 [Octadecabacter antarcticus 307]
 gi|198253474|gb|EDY77788.1| hypothetical protein OA307_2898 [Octadecabacter antarcticus 307]
          Length = 103

 Score = 40.4 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 23/38 (60%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           T H LRHS A H L   GD+R +   LGH  + TT++Y
Sbjct: 17  TPHVLRHSCAMHTLQATGDVRKVALWLGHASIQTTEMY 54


>gi|281354995|ref|ZP_06241489.1| integrase family protein [Victivallis vadensis ATCC BAA-548]
 gi|281317875|gb|EFB01895.1| integrase family protein [Victivallis vadensis ATCC BAA-548]
          Length = 457

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 112/287 (39%), Gaps = 76/287 (26%)

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKI------TTESNILNMRNLKKSNSLPRALNEK-QALT 136
           G  +LKR+    + FL +L+++KI      T ++    M NL  +   P+  N   Q L 
Sbjct: 108 GRLTLKRNELYCRKFLSFLEEKKIDSIDDITFDTAATFMTNLWSTGISPKTYNYYLQTLK 167

Query: 137 LVDNVLLHTSHETKWIDARN--------------SAIL--------YLLYGCGLRISEAL 174
           LV   LL      + I A+               SAI         ++L+   +RI   L
Sbjct: 168 LVFKTLLQDDSPFRNIKAKTATTESRKPFTPEQVSAIFKTLDDENYHILHKPQMRILFLL 227

Query: 175 SLTPQNIMDDQSTLR---IQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPL 229
            L     M D +  R   IQG G       +    RK I  ++ Y + P    L  Q  +
Sbjct: 228 GLCFGLRMHDAACFRWDYIQGDG------TVKFKARKTIKTMKQYIVLPIPSILEEQFKI 281

Query: 230 FRGI-RGKPLNPGVFQRY----------IRQLRRYLGL-----PLST------------- 260
                R + + P V +RY          + +L R  G+     P+ T             
Sbjct: 282 AETWKRNEYILPDVAERYGYNSSGISTDVDKLLRSAGIQTKEQPVETRRMFYINSQGETK 341

Query: 261 -------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                  + H+ RH+F T   S+G DL  I+SI+GH  ++ T+ YT+
Sbjct: 342 QRRIGRYSFHSFRHTFCTIAASSGKDLSLIRSIVGHSNVAMTEHYTH 388


>gi|315650043|ref|ZP_07903123.1| phage integrase family site-specific recombinase [Eubacterium
           saburreum DSM 3986]
 gi|315487813|gb|EFU78116.1| phage integrase family site-specific recombinase [Eubacterium
           saburreum DSM 3986]
          Length = 371

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 4/51 (7%)

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           EK+ALT ++   + T+  T     R    +YLLYGCGLR  EAL+LT  +I
Sbjct: 169 EKRALTELEIRAIKTADFT----GREKCFIYLLYGCGLRRGEALALTKYDI 215


>gi|294648177|ref|ZP_06725718.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|292636481|gb|EFF54958.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
          Length = 239

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (53%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           F   ++ L R L L    T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 151 FNNNLKDLARTLHLQSPVTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIY 206


>gi|270340181|ref|ZP_06007346.2| integrase [Prevotella bergensis DSM 17361]
 gi|270332344|gb|EFA43130.1| integrase [Prevotella bergensis DSM 17361]
          Length = 384

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 88/197 (44%), Gaps = 28/197 (14%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLT 177
           +  N  PRAL+      L    L    +E +   AR+      L+ C  G+   + ++L+
Sbjct: 192 RGENKRPRALDRASLDKL--QSLTFEPYEVELETARD----LFLFACYTGVAYCDMVALS 245

Query: 178 PQNIM-DDQSTLRIQGKGDK----IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
            +++  DD+  L ++ +  K     R+  L  +VR  ++E Y           +  LF  
Sbjct: 246 REHLFTDDEGALWLKFRRQKTNTLCRVKLLSEAVR--LMERY-------QSEDRSTLF-- 294

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFR 291
               P+   V+   ++ L+   G+ +  +AH  RH+FAT + L  G  + ++  +LGH  
Sbjct: 295 ---TPIAYSVYLAQLKALQLRAGISIPLSAHVGRHTFATLITLERGVPIETVSRMLGHSN 351

Query: 292 LSTTQIYTNVNSKNGGD 308
           + TT+ Y +V  K   D
Sbjct: 352 IQTTERYAHVTPKKLFD 368


>gi|261366729|ref|ZP_05979612.1| integrase/recombinase, phage integrase family [Subdoligranulum
           variabile DSM 15176]
 gi|282571556|gb|EFB77091.1| integrase/recombinase, phage integrase family [Subdoligranulum
           variabile DSM 15176]
          Length = 327

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 121/278 (43%), Gaps = 26/278 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G S+ TL  Y       L  +    +E IT + +R+     +  + ++R++ K+   +++
Sbjct: 64  GCSEKTLNYYRQTIFAMLSGIGKLAQE-ITTEDLRRY----LTDYQTQRKSSKVTIDNIR 118

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R LS   S+  +++      +S +  +  +K +  +    +++    + DN         
Sbjct: 119 RILS---SYFSWMEDEDHIVKSPVRRIHKVKTAKVIKETYSDETLEIMRDNCS------- 168

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
                R+ A++ LL   G+R+ E  +L   +I  ++    + GKG K RIV    +  K 
Sbjct: 169 ---SIRDLAMIDLLASSGMRVGEMSALNRDDINFNERECVVFGKGSKERIV-YFDARTKI 224

Query: 210 ILEYYDLCPFDLN--LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
            L+ Y     D N  L + L    G     L  G  +R +R+L R L LP     H  R 
Sbjct: 225 HLQNYLESRSDSNPALFVSLASPHG----RLQIGGIERRLRELGRRLDLP-RVHPHKFRR 279

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           + AT  +  G  +  +Q +LGH ++ TT  Y  V  +N
Sbjct: 280 TLATSAIDKGMPIEQVQQLLGHQKIDTTMHYAMVKQQN 317


>gi|260589353|ref|ZP_05855266.1| site-specific recombinase, phage integrase family [Blautia hansenii
           DSM 20583]
 gi|260540434|gb|EEX21003.1| site-specific recombinase, phage integrase family [Blautia hansenii
           DSM 20583]
          Length = 365

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 12/154 (7%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDK-IRIVPLLPSVRKAI 210
           D     IL LLY  G RISE L L  +N+ +++Q    I  K +  IR VP+   +    
Sbjct: 195 DKYYQIILMLLYN-GTRISEFLDLKKENVHLEEQYFDVIDSKTENGIRKVPIADKLLPYY 253

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            ++Y+ CP     + +  L      + L    +  Y   L   +G+    T H  RH+  
Sbjct: 254 KDWYNSCP-----DCEYLLHTEDGKRFLYRNYYDSYWTPLVEQIGI--DRTPHCTRHTCI 306

Query: 271 THLLSNGGDLRSIQSILGHFRLS--TTQIYTNVN 302
           + L   G    +I+ I+GH      T ++YT+++
Sbjct: 307 SMLSEAGVQDTTIKKIVGHSGAMTLTEKVYTHLD 340


>gi|150009721|ref|YP_001304464.1| putative integrase/transposase [Parabacteroides distasonis ATCC
           8503]
 gi|256838598|ref|ZP_05544108.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262382967|ref|ZP_06076104.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298374123|ref|ZP_06984081.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_19]
 gi|149938145|gb|ABR44842.1| putative integrase/transposase [Parabacteroides distasonis ATCC
           8503]
 gi|256739517|gb|EEU52841.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262295845|gb|EEY83776.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298268491|gb|EFI10146.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_19]
          Length = 315

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 11/138 (7%)

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           CG+  ++   LT  N+  ++   R +  G  IR V +   +R+ I +Y D     L    
Sbjct: 157 CGMPFADMARLTTANLYGEEIVYRRKKTGTLIR-VGITAGMRRLINKYADASSPYL---- 211

Query: 226 QLPLFRGIR--GKPLNPGVFQRY---IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
             P+    R  G      + + Y   ++++ R L  P+  T++  RH++AT+ L     L
Sbjct: 212 -FPILSPGREVGHEEYKAILRSYNNSLKKIGRALSRPIHLTSYVFRHTWATNALRKQVPL 270

Query: 281 RSIQSILGHFRLSTTQIY 298
             I   LGH    TT+ Y
Sbjct: 271 SIISQALGHTSEKTTRFY 288


>gi|38637794|ref|NP_942768.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|38637805|ref|NP_942779.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527132|gb|AAP85882.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527143|gb|AAP85893.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 410

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 127/308 (41%), Gaps = 44/308 (14%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFL--------IFLAFYTEEKITIQTIR 64
           E+ +  + +L +L  +RGL+K +L  Y    R FL          LA    +     TIR
Sbjct: 109 EIARIYRRYLDHLRQDRGLAKNSLLVYGPFIRDFLDSHSANDGTILA----DAFCAVTIR 164

Query: 65  Q--LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES---NILNMRNL 119
              L+Y+E R   S   T+ +           ++SF  +L  R  T      ++ ++R  
Sbjct: 165 DHFLTYSEGR---SAEYTRLMA--------VALRSFCHFLFLRGDTARDLYESVPSVRKW 213

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           ++S ++P  L  +Q        L+ ++  +     R+ AIL LL   GLR  E +++   
Sbjct: 214 RQS-TVPTFLTPEQ-----QEALIASADRSTPTGRRDYAILLLLARLGLRAGEIVAMQLD 267

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNI---QLPLFRGIRG 235
           +I      L + GKG  +  VPL   V  AI  Y  D      + ++   +L    G+ G
Sbjct: 268 DIHWRSGELVVHGKGQMVEHVPLPSEVGAAIATYLRDGRGASASRHVFLRRLAPRVGLAG 327

Query: 236 KPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
               P    + + Q     G       +AH  RH  AT ++ +G  +  I  +L H    
Sbjct: 328 ----PAAIGKIVCQAFARAGFRPACRGSAHLFRHGLATTMIRHGASIAEIAEVLRHRSPD 383

Query: 294 TTQIYTNV 301
           +T IY  V
Sbjct: 384 STAIYAKV 391


>gi|331004635|ref|ZP_08328099.1| hypothetical protein HMPREF0491_02961 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330409660|gb|EGG89097.1| hypothetical protein HMPREF0491_02961 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 142

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 27/49 (55%)

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +P +   H  RHS+A  L  NG DL  I   LGH  L TT IY + +++
Sbjct: 54  VPENVHPHLFRHSWAMILYQNGVDLTLISQWLGHSNLETTLIYAHADTE 102


>gi|319440793|ref|ZP_07989949.1| hypothetical protein CvarD4_03408 [Corynebacterium variabile DSM
           44702]
          Length = 405

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 7/113 (6%)

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +R+VPL   +  A+ E+ D+ P    L +  P      GKP NP       ++L    G+
Sbjct: 288 VRVVPLPSPLVDALREWRDVSPA-TTLGLVWP---DESGKPENPKADGAAWKELCVRAGV 343

Query: 257 -PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            PL  T H+ RH+  T LL +G     I+ + GH  + +T+ Y ++      D
Sbjct: 344 RPL--TLHSTRHTMVTLLLESGVSPEVIRQLAGHSTILSTRNYMHLGQDAARD 394


>gi|308271884|emb|CBX28492.1| hypothetical protein N47_G38160 [uncultured Desulfobacterium sp.]
          Length = 311

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 23/36 (63%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           H+LRH  A+ L   G  L +IQ+ILGH R +TT  Y
Sbjct: 255 HSLRHYGASKLAEAGAPLTAIQAILGHSRATTTDTY 290


>gi|300956937|ref|ZP_07169192.1| integron integrase [Escherichia coli MS 175-1]
 gi|300316284|gb|EFJ66068.1| integron integrase [Escherichia coli MS 175-1]
          Length = 165

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 5/61 (8%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR--IVP--LLPSV 206
           +D RN  I  LLYG GLRI+E L L  ++   D   + +  GKG K R  ++P  L+P++
Sbjct: 105 MDTRNQVIFTLLYGAGLRINECLRLRVKDFDFDNGCITVHDGKGGKSRNSLLPTRLIPAI 164

Query: 207 R 207
           +
Sbjct: 165 K 165


>gi|226361766|ref|YP_002779544.1| transposase for insertion sequence element [Rhodococcus opacus B4]
 gi|226240251|dbj|BAH50599.1| putative transposase for insertion sequence element [Rhodococcus
           opacus B4]
          Length = 538

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 66/171 (38%), Gaps = 29/171 (16%)

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKA 209
           W  AR   I  L + C       L   P         LRI  GKG   RIVPL P    A
Sbjct: 255 WSGARRDEIRRLTWDC-------LDTYPGG----HPRLRIPVGKGHTERIVPLHPDAAAA 303

Query: 210 ILEYYDLCPFDLNL---------NIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYLGL--- 256
           +     L     ++          +     R  RGK L+   +F    R +    GL   
Sbjct: 304 LENAIGLARAQRSIARIDEVTGRRVDYVFVR--RGKLLSVKTLFDEAFRTVCGATGLVDD 361

Query: 257 --PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
               + +AH LRH+  T L   G  +++I ++LGH   + + IY+ ++   
Sbjct: 362 RGSPTVSAHRLRHTLGTQLAEGGARIQTIMAVLGHRSATMSMIYSRISDPE 412


>gi|254437230|ref|ZP_05050724.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198252676|gb|EDY76990.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 397

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            Q   R++R   GLP  T  H LRH++A++ +S+G  ++ +  +LGH ++ TT  Y ++
Sbjct: 306 LQHPWRRVRERAGLP-HTRIHDLRHTYASNAVSSGMPIQMVGKLLGHTQIQTTMRYAHL 363


>gi|153809550|ref|ZP_01962218.1| hypothetical protein BACCAC_03868 [Bacteroides caccae ATCC 43185]
 gi|149127795|gb|EDM19019.1| hypothetical protein BACCAC_03868 [Bacteroides caccae ATCC 43185]
          Length = 447

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R ++ +     L    T +  RHSFAT + LSNG  + +I  ++GH+ + TTQIY  +
Sbjct: 337 RSLKIIAEQCNLGCHLTFYQARHSFATLICLSNGVPIETISKMMGHYSIRTTQIYAEI 394


>gi|265755920|ref|ZP_06090387.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
 gi|263233998|gb|EEZ19599.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
          Length = 414

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 68/153 (44%), Gaps = 19/153 (12%)

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR--------IVPLLPSVRKAILE 212
           YL +G    I EA+ LT  NI    +   I  K  K +         +P+ P++R+  LE
Sbjct: 250 YLCFGMSF-IDEAM-LTKNNINTFGAEEHIVYKRQKTQNAKNVKPITIPVTPAIREQ-LE 306

Query: 213 YYDLCPFDLNLNIQLPLF-RGIRGKPLNPGVFQRY------IRQLRRYLGLPLSTTAHTL 265
           ++      L  +  LP+  R   GK L   +  RY      ++QL + L + ++ T +  
Sbjct: 307 WFK-ANTTLTGDYLLPIITRDYEGKQLYDHIRSRYKRINDGLKQLGKLLHIRMNLTTYVS 365

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           RH+ A  L  N      I   LGH  L+TT +Y
Sbjct: 366 RHTMAMTLQGNDVPREIISQALGHRNLTTTNVY 398


>gi|153932007|ref|YP_001385123.1| phage integrase family site specific recombinase [Clostridium
           botulinum A str. ATCC 19397]
 gi|153935500|ref|YP_001388592.1| phage integrase family site specific recombinase [Clostridium
           botulinum A str. Hall]
 gi|152928051|gb|ABS33551.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 19397]
 gi|152931414|gb|ABS36913.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. Hall]
          Length = 379

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 3/52 (5%)

Query: 245 RYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           +Y+ ++  Y L +P +   H+LRH+ AT LL  G +++ IQ  LGH ++STT
Sbjct: 303 KYLSRVVNYELQIPFN--FHSLRHTHATMLLEAGANIKDIQQRLGHSKISTT 352


>gi|73541315|ref|YP_295835.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ralstonia
           eutropha JMP134]
 gi|72118728|gb|AAZ60991.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ralstonia
           eutropha JMP134]
          Length = 411

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 69/174 (39%), Gaps = 29/174 (16%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIM---DDQST----LRIQGKGDKIRIVPLLPSV 206
           AR   +  +LY  GLR SE    T        D Q      L + GKG K R+VP    +
Sbjct: 214 ARCRWLCTVLYLAGLRASEVAGTTMGAFFCRRDAQGIERWWLEVVGKGSKPRLVPATDEL 273

Query: 207 RKAILEYY---DLCPFDL---NLNIQLPLF-RGIRGKPLNPG--------VFQRYIRQLR 251
              +  Y     L P      +  + LP+  R    K ++ G        VF     +LR
Sbjct: 274 VAELARYRRANGLPPMPQPGEDRPLVLPVIGRANPDKAMSRGALHLVLKEVFSMAAERLR 333

Query: 252 R-------YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                      +  S +AH LRH+  +H+     DLR ++   GH  +STT IY
Sbjct: 334 ARGPQWAAQADVLASASAHWLRHTAGSHMSDRQVDLRHVRDNFGHASISTTSIY 387


>gi|317014414|gb|ADU81850.1| integrase/recombinase (XERCD family) protein [Helicobacter pylori
           Gambia94/24]
          Length = 357

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 120/268 (44%), Gaps = 29/268 (10%)

Query: 48  IFLAF-YTEEKITIQTIRQLSYTEIRAFI---SKRRTQKIGDRSLKRSLSGIKSFLKYL- 102
           +FL F Y + +I ++++  L+  ++  F+   +K R       S+ + +  ++ F  YL 
Sbjct: 77  LFLFFEYFDNRIKLKSLCNLAEEQVIDFLFGLAKNRKPS----SMAKYVMVLRQFFDYLD 132

Query: 103 KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
           +KR  + +  + N+   KK   LP+ LN+      +  +L +    +   + RN  IL L
Sbjct: 133 RKRNYSFDFELKNLSFAKKETHLPKHLNKNDFKAFIQALLKYRPKTS--FEKRNQCILLL 190

Query: 163 LYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           +   GLR  EAL L  +NI   ++   L I+GK ++ R   +     +  L  +      
Sbjct: 191 IALGGLRKFEALDLELKNIALENNHYRLLIKGKNNQERYAYIEKEFLQVPLNAW------ 244

Query: 221 LNLNIQLPLFRG--IRGKPLNPGV-----FQRYIRQLRRYLGLPLSTTA---HTLRHSFA 270
           L+   +L  F+G  +  K  N         + +I ++ +   +  ++     H  RHSFA
Sbjct: 245 LSDTKRLKSFKGRFVFKKAKNNTTQKTCSLKGFIAKIFKLSNIDENSYGLGLHLFRHSFA 304

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIY 298
           T +     DL      LGH  L +T+IY
Sbjct: 305 TFIYDETQDLVLTSRALGHSSLLSTKIY 332


>gi|284031312|ref|YP_003381243.1| integrase family protein [Kribbella flavida DSM 17836]
 gi|283810605|gb|ADB32444.1| integrase family protein [Kribbella flavida DSM 17836]
          Length = 463

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 22/152 (14%)

Query: 167 GLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
           GLR+SE + L  Q+++    +  LR+ GKG   R V L     +A+  Y  L   DL   
Sbjct: 230 GLRVSELVGLDRQHLVVSGGEQMLRVLGKGGVHREVYLTTLAAEALQRY--LGERDLLQE 287

Query: 225 IQLPLFRG-IRGKPLNP-------GVFQRY-----IRQLRRYLGLPLSTTA-----HTLR 266
              P  RG    +  +P       G   R+     +R++    G  L+  A     H LR
Sbjct: 288 TTTPALRGRTNAQATSPLIATRDGGRCSRFDVNALLRRVAVQAGPALADVADKVHPHALR 347

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           H++ T  L     ++ +Q+ +GH  ++TTQ Y
Sbjct: 348 HAYVTIALEQDARIQHVQADVGHASIATTQYY 379


>gi|255652516|ref|ZP_05399418.1| site-specific tyrosine recombinase XerC [Clostridium difficile
           QCD-37x79]
          Length = 323

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 58/292 (19%), Positives = 122/292 (41%), Gaps = 29/292 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA---FI 75
           + +L NL++     + T+++Y  D ++ + +L  + +E  T++ + ++ +T+I+     +
Sbjct: 8   EEFLLNLKLYNDRDEKTIKAYRADVKEGIRYL--FKKENCTMEELDKILFTDIQEKWLIL 65

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            K +  K    ++ R  +  K++  +L+ +    ++ +  ++ L+          EK+ L
Sbjct: 66  LKEKGMKAA--TINRKRASFKAYCGFLRAKGKIKDNPVSYVKKLQDKIQF-----EKKIL 118

Query: 136 TLVDNVLLHTSHETKWID------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           T  + + L  +    ++D       R++ I+ +L   G+RI E   +  ++I        
Sbjct: 119 TKDEIIKLLETMNKLYVDNKNYNTCRDNLIINILIFTGMRIHEIEKMNIKDINFSNGDFE 178

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPF-------DLNLNIQLPLFRGIRGKPLNPGV 242
           + GK    R V L   V K    Y D   F         N +    LF       L    
Sbjct: 179 VIGKRKLKRNVGLNEQVLKM---YRDFLYFRNQIEGKKDNKDSTNALFLSKNNSRLTTRS 235

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            +R + +  +   LP   T H+ +HSF + +   G  L  I    G+  + T
Sbjct: 236 IERLVEKALKLAELP-HVTPHSFKHSFVSLMSETGVKLEEIGKFTGNKSIET 286


>gi|122891785|ref|YP_001004330.1| integrase [Staphylococcus phage phiETA3]
 gi|121309264|dbj|BAF43885.1| integrase [Staphylococcus phage phiETA3]
          Length = 349

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 18/168 (10%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           L++  GLRI EA++L   +    +  + I    D I    + P  +    E  D+ P   
Sbjct: 187 LMFYTGLRIGEAMALVWTDYNKYKKEISINKTMD-ISNRTIYPRPKTDSSE--DIVPLPK 243

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQR------------YIRQLRRYLGLPLSTTAHTLRHSF 269
            +N  L   R  R K LN    +R            Y    +++         H LRHS+
Sbjct: 244 FINTMLTE-RHQREKELNKYFDERSYFIFGGMAPKHYSHVQKKFQKAFPHYNIHALRHSY 302

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQ 316
           A++L +NG D+  +QS++ H +++ T   Y+++ ++   D  + I+D+
Sbjct: 303 ASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKKHD-AIAIFDK 349


>gi|148244010|ref|YP_001220248.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|146400573|gb|ABQ29106.1| phage integrase family protein [Acidiphilium cryptum JF-5]
          Length = 313

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213
           S +  L+   GLRISEAL+L   ++  +   LR+ QGK  K R++PL PSV   +++Y
Sbjct: 131 STLFGLIAVTGLRISEALALDRDDLDAEHGVLRVRQGKLGKERLLPLDPSVVTQLIDY 188


>gi|255012989|ref|ZP_05285115.1| putative integrase/transposase [Bacteroides sp. 2_1_7]
          Length = 315

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 11/138 (7%)

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           CG+  ++   LT  N+  ++   R +  G  IR V +   +R+ I +Y D     L    
Sbjct: 157 CGMPFADMARLTTANLYGEEIVYRRKKTGTLIR-VGITAGMRRLINKYADASSPYL---- 211

Query: 226 QLPLFRGIR--GKPLNPGVFQRY---IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
             P+    R  G      + + Y   ++++ R L  P+  T++  RH++AT+ L     L
Sbjct: 212 -FPILSPGREVGHEEYKAILRSYNNSLKKIGRALSRPIHLTSYVFRHTWATNALRKQVPL 270

Query: 281 RSIQSILGHFRLSTTQIY 298
             I   LGH    TT+ Y
Sbjct: 271 SIISQALGHTSEKTTRFY 288


>gi|255008617|ref|ZP_05280743.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313146348|ref|ZP_07808541.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313135115|gb|EFR52475.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 414

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 20/153 (13%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVRKA 209
           AR + I   L   GL  ++   L P +I    + +  +RI  K  K+   +PL P + + 
Sbjct: 240 ARRAFIFSTL--TGLAYADIQLLHPHHIGTNAEGRRYIRINRKKTKVEAFIPLHP-IAER 296

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           IL  Y+        + + P+F      PL N       + +L   +G   + T H  RHS
Sbjct: 297 ILSLYN------TTDDEKPVF------PLPNRDALWFEVHELGVTIGKEENLTYHQSRHS 344

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           F T L+S    + SI  ++GH  + TTQ Y  +
Sbjct: 345 FGTFLISADIPIESIAKMMGHSNIRTTQGYARI 377


>gi|218128921|ref|ZP_03457725.1| hypothetical protein BACEGG_00493 [Bacteroides eggerthii DSM 20697]
 gi|217988884|gb|EEC55201.1| hypothetical protein BACEGG_00493 [Bacteroides eggerthii DSM 20697]
          Length = 412

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 10/155 (6%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213
           R+ A++ +    GLR S+   +T   I  ++  + + Q K  +  ++PL   V   ++EY
Sbjct: 238 RDKAVISIAMYTGLRGSDIAKMTVDTIDFERDLITLEQSKTHQKLVLPLRAVVGNVVMEY 297

Query: 214 YDLC-PFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYLGL---PLSTTAHTLRH 267
                P ++N+     LF  +    KP++PGV  +  R+    LG+            R 
Sbjct: 298 LKKERPKEVNIQ---RLFTHLYDPEKPISPGVIGKIARRFFNKLGIRKGECQNGIRLFRR 354

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             AT LL NG   R I  I+GH    +   Y + +
Sbjct: 355 YLATKLLRNGVTPRYISEIMGHISPESLNPYIDAD 389


>gi|149180906|ref|ZP_01859408.1| integrase/recombinase [Bacillus sp. SG-1]
 gi|148851425|gb|EDL65573.1| integrase/recombinase [Bacillus sp. SG-1]
          Length = 105

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 5/103 (4%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
            NN  E+   E       +L  LE+E+  S  TL SYE D   F  FL  +    +    
Sbjct: 6   NNNYLEVFFMEFQTALDEFLLYLEVEQNYSSNTLSSYESDLTLFHSFLKDHKRSTL---- 61

Query: 63  IRQLSYTEIRAFISKRRTQKIGD-RSLKRSLSGIKSFLKYLKK 104
           +  L+ + +R FI ++  Q+    RS++R +S +KSF K+  K
Sbjct: 62  LEDLNPSLVRRFIQQQTLQQYAKPRSVRRRISSLKSFSKFCLK 104


>gi|324115014|gb|EGC08979.1| phage integrase [Escherichia fergusonii B253]
          Length = 395

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 91/220 (41%), Gaps = 33/220 (15%)

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           IK+   +  ++ +T+      ++ L+++N+  R   E +    +  + L   ++T  + A
Sbjct: 178 IKAVFTWAGRQSMTSVHPARVVQLLRENNARQRYFTEDE----IRRIFLSADNDTSPVAA 233

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R   +L L    GLR  E      +++             D ++    LP  +       
Sbjct: 234 RYVKLLLL---TGLRRDELRLAKWEHV-------------DPVKRTLWLPETKNGYGRIV 277

Query: 215 DLCPFDLNLNIQLPLFRG--------IRGKPL-NP-GVFQRYIRQLRRYLGLPLSTTAHT 264
            L    +++   LP  RG         +G PL NP   FQR +R   R          HT
Sbjct: 278 HLNSLAMDVIRTLPTQRGNPWLFIGKKQGMPLSNPVKAFQRIVR---RAGIFDKEVCIHT 334

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            RHS A  ++S GG L  +Q+ LGH    ++Q Y +++ +
Sbjct: 335 CRHSVAALIVSYGGTLYDVQAQLGHRSSQSSQRYAHLHPQ 374


>gi|313888363|ref|ZP_07822033.1| site-specific recombinase, phage integrase family [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312845643|gb|EFR33034.1| site-specific recombinase, phage integrase family [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 411

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 85/219 (38%), Gaps = 53/219 (24%)

Query: 131 EKQALTLVDNVLL-----HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           +K+A+T+ + VL      ++    KW       I  ++   G+R+ E   L   ++  D 
Sbjct: 178 KKKAMTIEEQVLFEEYLSNSDEYKKWY-----PIFIVMLWTGMRVGEVTGLQWDDLDFDN 232

Query: 186 STLRI--------QGKG-------------DKIRIVPLLPSVRKAILEYYDLCP-FDLNL 223
             + +        +GKG                R +P++  V+ A L   +L   F +  
Sbjct: 233 GLINVNRTLVYYSKGKGLNNRYAINTPKTESGKRSIPMVQKVKDAFLMERELQKTFGIEC 292

Query: 224 NIQLPLFRGIR-----GKPLNPGVFQRYIRQLRRYLGLPLST---------------TAH 263
              +  F+        GK  N G   + +R++ R   L +                 + H
Sbjct: 293 CDSIDGFKDFVFLNRFGKVHNNGTLNKALRRIVRDCNLSIMDKNKSNSNDILLVPHLSNH 352

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
             RH+F T L     + +++QSILGH  +STT  IY + 
Sbjct: 353 IFRHTFTTRLNEQNINTKAMQSILGHSDISTTMDIYVDA 391


>gi|301308503|ref|ZP_07214457.1| integrase [Bacteroides sp. 20_3]
 gi|300833973|gb|EFK64589.1| integrase [Bacteroides sp. 20_3]
          Length = 442

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 223 LNIQLPLFRGIRGKPLNPGVFQ--------RYIRQLRRYLGLPLSTTAHTLRHSFATHL- 273
           L+I L +    +G+  +  +F         R ++ +    GL    T +  RH++AT + 
Sbjct: 302 LDIPLKIMEKYKGEGTDGRLFYVPVTSSLCRSLKIIGEICGLDCHLTYYMARHTYATEVC 361

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           LSNG  + +I  ++GH  + TTQIY  + ++
Sbjct: 362 LSNGVPIETISRMMGHSNIRTTQIYAEITNQ 392


>gi|171322479|ref|ZP_02911280.1| integrase family protein [Burkholderia ambifaria MEX-5]
 gi|171092193|gb|EDT37588.1| integrase family protein [Burkholderia ambifaria MEX-5]
          Length = 434

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPL--STTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           + G+ L+ G F   +R L R  GLP   S ++H+LR  FAT   SNG DL+ +   +G
Sbjct: 224 VSGEGLHAGSFVPLLRTLFREAGLPTPNSYSSHSLRRGFATWANSNGWDLKMLMEYVG 281


>gi|66396123|ref|YP_240491.1| ORF010 [Staphylococcus phage 55]
 gi|62636541|gb|AAX91652.1| ORF010 [Staphylococcus phage 55]
          Length = 349

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 18/168 (10%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           L++  GLRI EA++L   +    +  + I    D I    + P  +    E  D+ P   
Sbjct: 187 LMFYTGLRIGEAMALVWTDYNKYKKEISINKTMD-ISNRTIYPRPKTDSSE--DIVPLPK 243

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQR------------YIRQLRRYLGLPLSTTAHTLRHSF 269
            +N  L   R  R K LN    +R            Y    +++         H LRHS+
Sbjct: 244 FINTMLTE-RHQREKELNKYFDERSYFIFGGMAPKHYSHVQKKFQKAFPHYNIHALRHSY 302

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQ 316
           A++L +NG D+  +QS++ H +++ T   Y+++ ++   D  + I+D+
Sbjct: 303 ASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKKHD-AIAIFDK 349


>gi|16801663|ref|NP_471931.1| hypothetical protein lin2601 [Listeria innocua Clip11262]
 gi|16415138|emb|CAC97828.1| lin2601 [Listeria innocua Clip11262]
          Length = 314

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 13/142 (9%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGD-----KIRIVPLLPSVRKAILEYYDLCPFDL 221
           G+R +EAL++TP +      T+ I    D            L SVR   +++  +  F  
Sbjct: 148 GMRYAEALAITPADFDWTAQTISINKTWDYKYNKGFAKTKTLSSVRTIKIDWQIVGQFK- 206

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQR-YIRQLRRYLGLPLSTTA------HTLRHSFATHLL 274
            L    P    I  +    G ++R +   +  +L +  + T       H LRH+ A+ LL
Sbjct: 207 PLIKDFPEDEPIFVEKFGDGTYKRQFNSTINNFLAVKCNETGITQISFHALRHTHASVLL 266

Query: 275 SNGGDLRSIQSILGHFRLSTTQ 296
           + G  + +I + LGH  +  TQ
Sbjct: 267 AEGVSIHTISARLGHADVGVTQ 288


>gi|121605183|ref|YP_982512.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
 gi|120594152|gb|ABM37591.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
          Length = 331

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 93/216 (43%), Gaps = 34/216 (15%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++ RSL+  K  L    +  +  E+  L +++L  +N       +++    VD V   T 
Sbjct: 130 TINRSLATAKKGLALAWESNLIPENYGLRIKSLSVNN-------KREVFLSVDQVRQITQ 182

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205
           H T+    +  A ++     G R  E   +  ++I +++  +     K  + R++P++P+
Sbjct: 183 HCTE----QAQAAIWAALLTGARRGEIFQIRAEHIKENEIIVPASHTKTLRSRVIPIIPA 238

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           +R  ++ +    P  + ++                GV   + R   R          H L
Sbjct: 239 LRPWLVHF----PLTMTID----------------GVKSSWRRA--RVKADMEHVNFHDL 276

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           RHS A+ L++ G DL ++  ILGH    TTQ Y ++
Sbjct: 277 RHSCASILIALGVDLYTVSKILGHSNTQTTQRYAHL 312


>gi|309776099|ref|ZP_07671090.1| site-specific recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916050|gb|EFP61799.1| site-specific recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 352

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 12/142 (8%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDK-IRIVPLLPSVRKA 209
           ++ +   I  +L   G+RISE L+L   N+ + +Q     + K D  IR VP+   +   
Sbjct: 193 VECKYDYISLMLLYTGVRISELLNLEKVNVHLYEQYFFVKESKTDNGIRKVPIHDKILPF 252

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL--GLPLSTTAHTLRH 267
             E+Y+  P D    +          K      +  Y+R+  + L   L ++ T H  RH
Sbjct: 253 FEEWYNSSPEDYKYLLY--------DKEFTKLTYIEYVRKYYKPLMTKLDITLTPHCCRH 304

Query: 268 SFATHLLSNGGDLRSIQSILGH 289
           +  + +   G D   I+ I+GH
Sbjct: 305 TCISMMSEKGVDPTYIKLIVGH 326


>gi|317152141|ref|YP_004120189.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942392|gb|ADU61443.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 343

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 3/41 (7%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGH--FRLSTTQIYTNV 301
           H LRHSF+  +L +GG ++++Q +LGH  FR+ T   Y +V
Sbjct: 280 HDLRHSFSVAMLESGGGMKALQKLLGHSEFRV-TADTYADV 319


>gi|111225697|ref|YP_716491.1| putative tyrosine recombinase xerD [Frankia alni ACN14a]
 gi|111153229|emb|CAJ64979.1| putative Tyrosine recombinase xerD [Frankia alni ACN14a]
          Length = 446

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 27/44 (61%)

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           G+      H LRH+ A+ LL+ G DL+ ++  LGH  ++TTQ Y
Sbjct: 379 GIGRRVRVHDLRHAHASWLLAGGADLQVVKERLGHGSIATTQRY 422


>gi|331698164|ref|YP_004334403.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326952853|gb|AEA26550.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
          Length = 591

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           V QRY + ++R   L + T+ H LRH  AT L++ G D+R++   LGH    TT + T
Sbjct: 338 VSQRYAKLVKR---LEIHTSIHKLRHFSATELIAAGVDIRTVAGRLGHSGGGTTTLRT 392


>gi|210612354|ref|ZP_03289279.1| hypothetical protein CLONEX_01480 [Clostridium nexile DSM 1787]
 gi|319937022|ref|ZP_08011432.1| integrase [Coprobacillus sp. 29_1]
 gi|210151614|gb|EEA82621.1| hypothetical protein CLONEX_01480 [Clostridium nexile DSM 1787]
 gi|319807958|gb|EFW04537.1| integrase [Coprobacillus sp. 29_1]
          Length = 432

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           H LRH++ ++LLSNG   + +Q +LGH  +STT  IY + 
Sbjct: 374 HMLRHTYTSNLLSNGAAPKDVQELLGHTDVSTTMNIYAHA 413


>gi|66396051|ref|YP_240411.1| ORF011 [Staphylococcus phage 71]
 gi|258423471|ref|ZP_05686362.1| integrase [Staphylococcus aureus A9635]
 gi|62636470|gb|AAX91581.1| ORF011 [Staphylococcus phage 71]
 gi|257846532|gb|EEV70555.1| integrase [Staphylococcus aureus A9635]
          Length = 349

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 18/168 (10%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           L++  GLRI EA++L   +    +  + I    D I    + P  +    E  D+ P   
Sbjct: 187 LMFYTGLRIGEAMALVWTDYNKYKKEISINKTMD-ISNRTIYPRPKTDSSE--DIVPLPK 243

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQR------------YIRQLRRYLGLPLSTTAHTLRHSF 269
            +N  L   R  R K LN    +R            Y    +++         H LRHS+
Sbjct: 244 FINTMLTE-RHQREKELNKYFDERSYFIFGGMAPKHYSHVQKKFQKAFPHYNIHALRHSY 302

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQ 316
           A++L +NG D+  +QS++ H +++ T   Y+++ ++   D  + I+D+
Sbjct: 303 ASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKKHD-AIAIFDK 349


>gi|15923837|ref|NP_371371.1| integrase [Staphylococcus aureus subsp. aureus Mu50]
 gi|122891715|ref|YP_001004261.1| integrase [Staphylococcus phage phiETA2]
 gi|156979174|ref|YP_001441433.1| integrase [Staphylococcus aureus subsp. aureus Mu3]
 gi|255005635|ref|ZP_05144236.2| integrase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|258440883|ref|ZP_05690718.1| integrase [Staphylococcus aureus A8115]
 gi|282894657|ref|ZP_06302884.1| integrase [Staphylococcus aureus A8117]
 gi|304443267|ref|YP_003857097.1| integrase [Staphylococcus phage SAP-26]
 gi|14246616|dbj|BAB57009.1| integrase [Staphylococcus aureus subsp. aureus Mu50]
 gi|121309194|dbj|BAF43816.1| integrase [Staphylococcus phage phiETA2]
 gi|156721309|dbj|BAF77726.1| integrase [Staphylococcus aureus subsp. aureus Mu3]
 gi|257852397|gb|EEV76318.1| integrase [Staphylococcus aureus A8115]
 gi|282762934|gb|EFC03067.1| integrase [Staphylococcus aureus A8117]
 gi|302749875|gb|ADL66960.1| integrase [Staphylococcus phage SAP-26]
          Length = 349

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 18/168 (10%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           L++  GLRI EA++L   +    +  + I    D I    + P  +    E  D+ P   
Sbjct: 187 LMFYTGLRIGEAMALVWTDYNKYKKEISINKTMD-ISNRTIYPRPKTDSSE--DIVPLPK 243

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQR------------YIRQLRRYLGLPLSTTAHTLRHSF 269
            +N  L   R  R K LN    +R            Y    +++         H LRHS+
Sbjct: 244 FINTMLTE-RHQREKELNKYFDERSYFIFGGMAPKHYSHVQKKFQKAFPHYNIHALRHSY 302

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQ 316
           A++L +NG D+  +QS++ H +++ T   Y+++ ++   D  + I+D+
Sbjct: 303 ASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKKHD-AIAIFDK 349


>gi|329726805|gb|EGG63265.1| site-specific recombinase, phage integrase family [Staphylococcus
           epidermidis VCU144]
          Length = 349

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 18/168 (10%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           L++  GLR+ EA++L   +    +  + I    D I    + P  +    E  D+ P   
Sbjct: 187 LMFYTGLRVGEAMALVWTDFNKYKKEISISKTMD-ISNRTIYPRPKTDSSE--DIVPLPK 243

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQR------------YIRQLRRYLGLPLSTTAHTLRHSF 269
            +N  L   R  R K  N    +R            Y    +++     +   HTLRHS+
Sbjct: 244 FINEMLTQ-RYQREKSANKYFDERSYFIFGGMAPKHYQHAQKKFQQAFPNYNIHTLRHSY 302

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQ 316
           A++L +NG D+  +QS++ H +++ T   Y+++ ++   D  + I+D+
Sbjct: 303 ASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKKHD-AIAIFDE 349


>gi|257080356|ref|ZP_05574717.1| integrase/recombinase [Enterococcus faecalis E1Sol]
 gi|256988386|gb|EEU75688.1| integrase/recombinase [Enterococcus faecalis E1Sol]
          Length = 395

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 24/41 (58%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T H LRH++AT     G D+  I + L H  +STT+IY N 
Sbjct: 335 TPHKLRHTYATLARQGGADMNQISNALTHSGISTTKIYVNT 375


>gi|27363563|ref|NP_759091.1| site-specific recombinase XerC [Vibrio vulnificus CMCP6]
 gi|27359679|gb|AAO08618.1| Site-specific recombinase XerC [Vibrio vulnificus CMCP6]
          Length = 234

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 4/91 (4%)

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL---SNGGDLR 281
           ++ PLF     + ++   FQ       R   +P   T H LRHS+A   L   ++   LR
Sbjct: 139 LERPLFLSRNRQAMSRRSFQSRFSTWCRLANVP-EGTPHWLRHSWAKRYLERTTSPDALR 197

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            +Q++LGH  ++TT +YT  + ++    M E
Sbjct: 198 RVQAVLGHSNIATTSVYTTPDRESLSSAMRE 228


>gi|154243847|ref|YP_001409420.1| integrase domain-containing protein [Xanthobacter autotrophicus
           Py2]
 gi|154162969|gb|ABS70184.1| integrase domain protein SAM domain protein [Xanthobacter
           autotrophicus Py2]
          Length = 438

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 28/93 (30%)

Query: 235 GKPLNPG----VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN-------------- 276
           G P+ P     +F R   + R + GL ++ + H LRH+FA H+L+               
Sbjct: 321 GMPVQPNSWEVIFARASSRCRSF-GLDINISPHQLRHTFAVHMLAMLIQHRIRDAALPAG 379

Query: 277 ---------GGDLRSIQSILGHFRLSTTQIYTN 300
                    G  L+ +Q +LGH  L+TT IY +
Sbjct: 380 SMEGYRQMLGDPLQQVQRLLGHASLTTTYIYLD 412


>gi|315146060|gb|EFT90076.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2141]
          Length = 280

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 20/163 (12%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-------KIRIVP-LLPSVRKAILEY 213
            +Y  GLR  EA+SLT  + + ++  + + G  D         + +P  L S RK  L  
Sbjct: 104 FMYLTGLRAGEAISLTINDYVKNEHAILVNGTLDYSNGYKNATKELPKTLASFRKVELSN 163

Query: 214 YDLCPFD---LNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLG---LPLSTTA 262
             +   +   L   I+       LF G  G P+    F   +++    LG   +  + ++
Sbjct: 164 RAVEIIEELILEREIKFKEQTNYLFVGKTGNPIQVNSFNASLKKANESLGKNKINKTISS 223

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
           H  RHS  + L      +++I   +GH    TT +IYT+V  K
Sbjct: 224 HIFRHSHISLLAELNVPVKAIMERVGHVDTETTLKIYTHVTKK 266


>gi|253731456|ref|ZP_04865621.1| integrase [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253724699|gb|EES93428.1| integrase [Staphylococcus aureus subsp. aureus USA300_TCH959]
          Length = 349

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 18/168 (10%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           L++  GLRI EA++L   +    +  + I    D I    + P  +    E  D+ P   
Sbjct: 187 LMFYTGLRIGEAMALVWTDYNKYKKEISINKTMD-ISNRTIYPRPKTDSSE--DIVPLPK 243

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQR------------YIRQLRRYLGLPLSTTAHTLRHSF 269
            +N  L   R  R K LN    +R            Y    +++         H LRHS+
Sbjct: 244 FINTMLTE-RHQREKELNKYFDERSYFIFGGMAPKHYSHVQKKFQKAFPHYNIHALRHSY 302

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQ 316
           A++L +NG D+  +QS++ H +++ T   Y+++ ++   D  + I+D+
Sbjct: 303 ASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKKHD-AIAIFDK 349


>gi|304569678|ref|YP_009404.2| fused molybdenum-pterin binding domain-containing
           protein/site-specific recombinase phage integrase family
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|311232519|gb|ADP85373.1| TOBE domain-containing protein [Desulfovibrio vulgaris RCH1]
          Length = 465

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 16/139 (11%)

Query: 159 ILYLLYGCG-LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           + +LL+  G LR+ E L +  +  +D    L +  +G + R VPL   V   +L   D  
Sbjct: 99  LAFLLFRFGALRLGEVLGIDDEADVDRGHAL-LHVRGVQPRDVPLPEPVMAEVLRVLDD- 156

Query: 218 PFDLNLNIQLPLFRGIRGKPL--NPGVFQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLL 274
                     P+   +RG+ L  +PG  +R   +     G+P    +   LRHS A  LL
Sbjct: 157 ----------PMMFSLRGQVLRLDPGYLRRRFYERSGGCGIPRDHLSPRVLRHSRAIELL 206

Query: 275 SNGGDLRSIQSILGHFRLS 293
             G  L+ +Q +LGH  +S
Sbjct: 207 RGGVPLKVVQQVLGHQSVS 225


>gi|126667754|ref|ZP_01738722.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126668747|ref|ZP_01739696.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126669115|ref|ZP_01740044.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126669149|ref|ZP_01740075.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126626382|gb|EAZ97053.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126626411|gb|EAZ97079.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126626784|gb|EAZ97432.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126627857|gb|EAZ98486.1| integrase/recombinase [Marinobacter sp. ELB17]
          Length = 322

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 93/229 (40%), Gaps = 36/229 (15%)

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           I+    Y ++R   +     +   +K S  LP    + Q + L+      ++H+T+ + A
Sbjct: 79  IRQLCLYRRRRDPASFVPEQDWAPIKASTFLPYIFTQDQIVHLITAA---SAHDTRHLCA 135

Query: 155 RN-SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS-------- 205
                +L +LY  GLR+ EA  L   +I  +Q    ++    + RIVP L          
Sbjct: 136 GMLRMLLLILYCTGLRLGEAARLQLSDIDLEQRCFLVRESKGRSRIVPFLDDLAHELNDC 195

Query: 206 --VRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS--- 259
             +R+ ILE      P  L L           G+ L        IR+L R  GL  +   
Sbjct: 196 LRLRRRILEAIATADPGALLLRNS--------GQALPVKAASEAIRRLLRREGLKPARGR 247

Query: 260 --TTAHTLRHSFATHLLS----NGGDLRS----IQSILGHFRLSTTQIY 298
                +  RH+FA H L+     G D+ +    + + +GH  +  TQ+Y
Sbjct: 248 TGPRPYEFRHAFAVHRLTAWYHEGVDIHARLPWLSAYMGHVDVLGTQVY 296


>gi|257077137|ref|ZP_05571498.1| integrase-recombinase protein [Ferroplasma acidarmanus fer1]
          Length = 209

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 85/189 (44%), Gaps = 21/189 (11%)

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS---GIKSFLKYLKKRKITTESNILNM 116
           I T+R++ Y      +S R +     R  +R+ S    +  ++KYL +        +L  
Sbjct: 34  IDTLRKIRYLGKHLDLSSRESMLEFLRKERRNGSPKQKVNGYIKYLNR--------LLTF 85

Query: 117 RNLKKSNSLPRALNE---KQALTLVDNVLLHTSHETKWI-DARNSAILYLLYGCGLRISE 172
             L K + +P   N    K+A        L    + K I D RN A++ L    GLR SE
Sbjct: 86  EGLDKIDYIPELRNNSFRKRAFATDQIQTLIVKSKGKTIEDKRNHAMILLALNTGLRRSE 145

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
             ++  ++I ++  T+   GKG+K R V L  + RK I++Y     F  N N    LF  
Sbjct: 146 ICNIKVEDIHNNFLTVNY-GKGEKSRDVFLDDNTRKVIMDY----SFIRNNNDMPYLFTT 200

Query: 233 IRGKPLNPG 241
            +GK + PG
Sbjct: 201 KKGK-VTPG 208


>gi|92118356|ref|YP_578085.1| phage integrase [Nitrobacter hamburgensis X14]
 gi|91801250|gb|ABE63625.1| phage integrase [Nitrobacter hamburgensis X14]
          Length = 359

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 27/65 (41%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           GKP     F  ++R   +  GLPL    H LR +    L   G     I + LGH  L  
Sbjct: 256 GKPFTVDGFSGFMRDAIKAAGLPLDCRPHGLRKTLGRRLADRGVSAHDIMAALGHTTLGE 315

Query: 295 TQIYT 299
            + YT
Sbjct: 316 AERYT 320


>gi|17426229|ref|NP_510895.1| similar to phage phi 11 integrase [Staphylococcus phage phiETA]
 gi|8918416|dbj|BAA97587.1| unnamed protein product [Staphylococcus phage phiETA]
          Length = 349

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 18/168 (10%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           L++  GLRI EA++L   +    +  + I    D I    + P  +    E  D+ P   
Sbjct: 187 LMFYTGLRIGEAMALVWTDYNKYKKEISINKTMD-ISNRTIYPRPKTDSSE--DIVPLPK 243

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQR------------YIRQLRRYLGLPLSTTAHTLRHSF 269
            +N  L   R  R K LN    +R            Y    +++         H LRHS+
Sbjct: 244 FINTMLTE-RHQREKELNKYFDERSYFIFGGMAPKHYSHVQKKFQKAFPHYNIHALRHSY 302

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQ 316
           A++L +NG D+  +QS++ H +++ T   Y+++ ++   D  + I+D+
Sbjct: 303 ASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKKHD-AIAIFDK 349


>gi|313618600|gb|EFR90571.1| gp43 [Listeria innocua FSL S4-378]
          Length = 249

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 14/156 (8%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-----KIRIVPLLPSVRKAILEY 213
            + L    G+R +EAL++TP +      T+ I    D            L SVR   +++
Sbjct: 75  FVMLAAKTGMRYAEALAITPADFDWTAQTISINKTWDYKYNKGFAKTKTLSSVRTIKIDW 134

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-YIRQLRRYLGLPLSTTA------HTLR 266
             +  F   L    P    I  +    G ++R +   +  +L      T       H LR
Sbjct: 135 QIVGQFK-PLIKDFPEDEPIFVEKFEDGTYKRQFNSTINNFLAAKCKETGITQISFHALR 193

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNV 301
           H+ A+ LL+ G  + +I S LGH  +  TQ  Y +V
Sbjct: 194 HTHASVLLAEGVSIHTISSRLGHADVGVTQETYAHV 229


>gi|310778729|ref|YP_003967062.1| integrase family protein [Ilyobacter polytropus DSM 2926]
 gi|309748052|gb|ADO82714.1| integrase family protein [Ilyobacter polytropus DSM 2926]
          Length = 324

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 13/157 (8%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAIL 211
           RN  I++ L+  G+R  E L+L   +I+  +    I+    K  + +   L P   + I 
Sbjct: 155 RNRIIVHTLFYTGMRSQELLNLKYSDIIKREKEYVIKLEKTKSGREQYKALHPECMEKIF 214

Query: 212 EY-------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            Y       Y L    L      P    +    L+       I+ + + +   +S   H 
Sbjct: 215 SYKKYIKKLYSLSDSQLEEQYIFPS-DFLNNTRLSYSSLYTIIQNMGKLIEKDIS--PHN 271

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +RH+ AT L   G D+  I+  LGH     T++Y N 
Sbjct: 272 IRHAVATELSLQGADIMEIRDFLGHADTKVTEVYINA 308


>gi|238785804|ref|ZP_04629775.1| Phage integrase family protein [Yersinia bercovieri ATCC 43970]
 gi|238713296|gb|EEQ05337.1| Phage integrase family protein [Yersinia bercovieri ATCC 43970]
          Length = 182

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 72/140 (51%), Gaps = 7/140 (5%)

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLN 224
             LRIS+ LSLT  ++  D+  + I+GK  K R + +L S  KAI+E      P  + L 
Sbjct: 38  VALRISDLLSLTYADVQGDRLVI-IEGKTSKPRHI-VLNSKAKAIVERRKAENPTHVYL- 94

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
            ++   R  +GKP++     R  +++   +G+ L T  H++R +    + ++G ++ +I 
Sbjct: 95  FEVSTNRA-KGKPISRENVSRKFKEIGEIIGIALGT--HSMRKTRGWVMYNSGINIETIA 151

Query: 285 SILGHFRLSTTQIYTNVNSK 304
            +L H   + T  Y  ++ +
Sbjct: 152 KVLNHSSPAITMRYIGLDQQ 171


>gi|298682367|gb|ADI95428.1| phage integrase family site specific recombinase [Pseudomonas
           putida]
          Length = 292

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 48/234 (20%), Positives = 101/234 (43%), Gaps = 11/234 (4%)

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALN 130
           A ++  R       S    ++ I+  +    ++ +     +L +R +K +    LP   N
Sbjct: 45  ALVAALRADGFAPNSSSLYVNAIRGVMNEAWRQGLIDHEQLLRIREVKPATGSRLPPGRN 104

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            ++  +L+  ++   + + +    R++AI+ LLYG G+R SE++ +    +  +  +L++
Sbjct: 105 LRR--SLIRELMDVCAADPRPQGVRDAAIIALLYGTGMRKSESVDIDLDQVDFEARSLQV 162

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNPG-VFQRY 246
            GKG+   +    P   + +  + +L   +L    +   F   R  RG  +    + +  
Sbjct: 163 VGKGNHQLVKYAPPWAFEKLQAWLELRRQELPAGAEDDPFLFNRIRRGNHITRARITKHA 222

Query: 247 IRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           I  + R  G  + +    H  R +F T ++    DL   Q +  H  + TT IY
Sbjct: 223 IYYIARQRGAQVGVKIMPHDFRRAFITRVIEE-HDLSIAQKLAHHANIQTTAIY 275


>gi|291009716|ref|ZP_06567689.1| phage integrase family site specific recombinase [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 319

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 5/136 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ AI+ L    G R++E   L  +++     ++ + GKG K+R V +     +A+  Y 
Sbjct: 155 RDQAIIRLFCNTGARLAEVAHLRLEDVDLKTESVTLYGKGGKVRRVRMGARTARALSRY- 213

Query: 215 DLCPFDLNLNIQLP-LFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
            L          LP L+   R G+ LN    +  +++L +  GL     AH  RH++A  
Sbjct: 214 -LRARAKRKGADLPNLWLADRGGQALNANGIKIRLKRLGQRAGLD-HVHAHRWRHTYAHQ 271

Query: 273 LLSNGGDLRSIQSILG 288
               GGD   +  +LG
Sbjct: 272 WKRAGGDTGDLMLLLG 287


>gi|281423082|ref|ZP_06253995.1| tyrosine recombinase XerD [Prevotella oris F0302]
 gi|281402795|gb|EFB33626.1| tyrosine recombinase XerD [Prevotella oris F0302]
          Length = 74

 Score = 40.4 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 263 HTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           H  RH+ AT + LSNG  + S+ S+LGH  +S+TQIY  + ++
Sbjct: 6   HMARHTMATVVCLSNGMPIESVSSVLGHKCISSTQIYAKITNE 48


>gi|188535884|ref|YP_001905944.1| Site-specific recombinase [Erwinia tasmaniensis Et1/99]
 gi|188027188|emb|CAO95025.1| Site-specific recombinase [Erwinia tasmaniensis Et1/99]
          Length = 247

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 32/169 (18%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQS------------TLRIQGKGDKIRIV 200
           D ++  +   L+  G RI EA SL P++ + D              + R +   D +R+V
Sbjct: 60  DRKHHFLFSTLWNTGARIGEACSLQPESFVLDGPRPFVRILSEKVRSRRGRPPKDAVRLV 119

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG----- 255
           PL  S R  + +              +   R  R +P+     +     L+  +      
Sbjct: 120 PL--SDRSYVHQVISW----------MATARPRRREPIWSATDETMRNWLKAAVNRAAAD 167

Query: 256 ---LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                +  T HT RHS+  H+L +   L+ IQS++GH    + ++YT V
Sbjct: 168 GVHFSIPVTPHTFRHSYIMHMLYHRQPLKVIQSLVGHKDARSIEVYTRV 216


>gi|332880867|ref|ZP_08448538.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332681250|gb|EGJ54176.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 418

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 32/54 (59%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           R ++++ R  GL +  T +  RH++A+ +   G DL  + + LGH  L TTQIY
Sbjct: 343 RNLKKIGRMAGLCIPLTTYVARHTWASTMRDMGYDLSIVSTGLGHENLKTTQIY 396


>gi|228471376|ref|ZP_04056177.1| integrase [Porphyromonas uenonis 60-3]
 gi|228306877|gb|EEK15990.1| integrase [Porphyromonas uenonis 60-3]
          Length = 404

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           QLR  + +PLS  AH  RH+FAT + L  G  + ++  +LGH  + TT+ Y +V  K   
Sbjct: 330 QLRAGISIPLS--AHVGRHTFATLITLERGVPIETVSRMLGHSNIQTTERYAHVTPKKLF 387

Query: 308 D 308
           D
Sbjct: 388 D 388


>gi|226312929|ref|YP_002772823.1| hypothetical protein BBR47_33420 [Brevibacillus brevis NBRC 100599]
 gi|226095877|dbj|BAH44319.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 211

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 3/76 (3%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTN 300
           +F  + R L++ + +P S   H+LRH+ A  L+  G D++ IQ  LGH  +  T  +Y +
Sbjct: 132 LFNAFSRTLKK-VSIP-SMPIHSLRHTHAVLLMETGADMKYIQERLGHGSMQITADVYAH 189

Query: 301 VNSKNGGDWMMEIYDQ 316
           ++ K   D M +  D 
Sbjct: 190 ISKKIESDNMRKFEDH 205


>gi|118588952|ref|ZP_01546359.1| hypothetical protein SIAM614_12908 [Stappia aggregata IAM 12614]
 gi|118438281|gb|EAV44915.1| hypothetical protein SIAM614_12908 [Stappia aggregata IAM 12614]
          Length = 381

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 4/145 (2%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
            ++ L   GLR++ A  ++   + + +  ++I  KG+    VP+       I++     P
Sbjct: 207 FVWFLLSRGLRVNAAAGMSKDRLDEPRCRIQIWIKGEGWVWVPVTKEQMTVIVQEAKKAP 266

Query: 219 FD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
                +  +Q    RG R +    G F+R +    +  G+      H LRH FA+ LL  
Sbjct: 267 GKAVWSYEMQRHPNRGKRQEITYTG-FRRTMATALKAAGIT-DFRIHDLRHDFASKLLRA 324

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNV 301
             DL  +++ L H  +S+T  Y +V
Sbjct: 325 TRDLALVKNALKHADISSTIRYAHV 349


>gi|26554273|ref|NP_758207.1| integrase [Mycoplasma penetrans HF-2]
 gi|26454282|dbj|BAC44611.1| integrase [Mycoplasma penetrans HF-2]
          Length = 272

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 8/141 (5%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           I+  L   G R+SE + +  +++      + I  KG KIR + +  ++R    E+     
Sbjct: 121 IVRFLAATGARVSELIKIKVEHV--HLGYIDIYTKGGKIRRIYIPRNLRIEATEWLK--- 175

Query: 219 FDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
             LNL     +F    GK +   G+ Q+      +Y   P     H+ RH FA + L   
Sbjct: 176 -KLNLE-SGYIFLNRYGKLITARGISQQLKNYAIKYKLNPSVVYPHSFRHRFAKNFLEKY 233

Query: 278 GDLRSIQSILGHFRLSTTQIY 298
            D+  +  ++GH  + TT+IY
Sbjct: 234 NDISLLADLMGHESIETTRIY 254


>gi|16759658|ref|NP_455275.1| DNA recombinase [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|16764086|ref|NP_459701.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29142569|ref|NP_805911.1| DNA recombinase [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|161615058|ref|YP_001589023.1| hypothetical protein SPAB_02818 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167552867|ref|ZP_02346618.1| HbiF [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
 gi|167992991|ref|ZP_02574086.1| HbiF [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168238858|ref|ZP_02663916.1| HbiF [Salmonella enterica subsp. enterica serovar Schwarzengrund
           str. SL480]
 gi|168240567|ref|ZP_02665499.1| HbiF [Salmonella enterica subsp. enterica serovar Heidelberg str.
           SL486]
 gi|168467729|ref|ZP_02701566.1| HbiF [Salmonella enterica subsp. enterica serovar Newport str.
           SL317]
 gi|168820157|ref|ZP_02832157.1| HbiF [Salmonella enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194446017|ref|YP_002039954.1| hypothetical protein SNSL254_A0776 [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194450002|ref|YP_002044748.1| DNA recombinase HbiF [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194737935|ref|YP_002113823.1| HbiF [Salmonella enterica subsp. enterica serovar Schwarzengrund
           str. CVM19633]
 gi|197265135|ref|ZP_03165209.1| HbiF [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA23]
 gi|200390568|ref|ZP_03217179.1| HbiF [Salmonella enterica subsp. enterica serovar Virchow str.
           SL491]
 gi|204929831|ref|ZP_03220852.1| HbiF [Salmonella enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|213163174|ref|ZP_03348884.1| HbiF [Salmonella enterica subsp. enterica serovar Typhi str.
           E00-7866]
 gi|213428157|ref|ZP_03360907.1| HbiF [Salmonella enterica subsp. enterica serovar Typhi str.
           E02-1180]
 gi|213582132|ref|ZP_03363958.1| HbiF [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
 gi|213852661|ref|ZP_03382193.1| HbiF [Salmonella enterica subsp. enterica serovar Typhi str. M223]
 gi|289803851|ref|ZP_06534480.1| HbiF [Salmonella enterica subsp. enterica serovar Typhi str. AG3]
 gi|289826644|ref|ZP_06545650.1| HbiF [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-3139]
 gi|25301278|pir||AH0588 probable DNA recombinase [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16419225|gb|AAL19660.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16501950|emb|CAD05178.1| probable DNA recombinase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29138200|gb|AAO69771.1| probable DNA recombinase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|161364422|gb|ABX68190.1| hypothetical protein SPAB_02818 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404680|gb|ACF64902.1| HbiF [Salmonella enterica subsp. enterica serovar Newport str.
           SL254]
 gi|194408306|gb|ACF68525.1| HbiF [Salmonella enterica subsp. enterica serovar Heidelberg str.
           SL476]
 gi|194713437|gb|ACF92658.1| HbiF [Salmonella enterica subsp. enterica serovar Schwarzengrund
           str. CVM19633]
 gi|195629209|gb|EDX48577.1| HbiF [Salmonella enterica subsp. enterica serovar Newport str.
           SL317]
 gi|197243390|gb|EDY26010.1| HbiF [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA23]
 gi|197288341|gb|EDY27722.1| HbiF [Salmonella enterica subsp. enterica serovar Schwarzengrund
           str. SL480]
 gi|199603013|gb|EDZ01559.1| HbiF [Salmonella enterica subsp. enterica serovar Virchow str.
           SL491]
 gi|204320825|gb|EDZ06026.1| HbiF [Salmonella enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205322551|gb|EDZ10390.1| HbiF [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
 gi|205328859|gb|EDZ15623.1| HbiF [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205339818|gb|EDZ26582.1| HbiF [Salmonella enterica subsp. enterica serovar Heidelberg str.
           SL486]
 gi|205343132|gb|EDZ29896.1| HbiF [Salmonella enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|261245980|emb|CBG23782.1| putative type 1 fimbriae regulatory protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267992454|gb|ACY87339.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301157308|emb|CBW16796.1| putative type 1 fimbriae regulatory protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312911743|dbj|BAJ35717.1| HbiF [Salmonella enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|321226292|gb|EFX51343.1| putative DNA recombinase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323129027|gb|ADX16457.1| DNA recombinase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|332987653|gb|AEF06636.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 188

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 63/157 (40%), Gaps = 2/157 (1%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILEY 213
           RN  ++ + +  G R SE L L   +I      L I+   +      PLLP     +  +
Sbjct: 26  RNRCLILMAFIHGFRASELLGLRLSDIDLAGRQLYIRRLKNGFSTCHPLLPDEYNVLKSW 85

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                +         LF  +R  PL+   F   +R+  R   L ++   H LRH+    L
Sbjct: 86  LRARKYLEKGADGDWLFLSLRRHPLSRQQFFYILREAGRLAELTIAPHPHMLRHACGYAL 145

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNS-KNGGDW 309
              G D R IQ  LGH  +  T  YT  N+ +  G W
Sbjct: 146 ADKGIDTRLIQDYLGHRNIQHTVRYTASNAGRFHGIW 182


>gi|324992908|gb|EGC24828.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK405]
          Length = 356

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 99/266 (37%), Gaps = 38/266 (14%)

Query: 68  YTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL- 125
           Y   R  ++   TQ  +   ++ R+LS + S  KYL +     +      RN+ K  +  
Sbjct: 85  YLRERPLLNANTTQNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATK 144

Query: 126 -------PRALNEKQALTLVDNVLLHTSHETKWID-------------------ARNSAI 159
                   RA N KQ L L D     T    ++ID                    R+ AI
Sbjct: 145 KKKETLAARAENIKQKLFLGD----ETEGFLQYIDREYPKKLSNRALSSFNKNKERDLAI 200

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP- 218
           + LL   G+R+SEA++L  ++I      + +  KG K   V +       + EY  +   
Sbjct: 201 IALLLASGVRLSEAVNLDLKDINLKMMVIEVTRKGGKRDSVNVAAFAMSYLEEYLSIRSK 260

Query: 219 -FDLNLNIQLPLFRGIRGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
            +              RG P  ++    ++ + +        +  T H LRH+ AT L  
Sbjct: 261 RYKAEKTDTAFFLTEYRGNPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYD 318

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNV 301
                  +   LGH     T +YT++
Sbjct: 319 ATKSQVLVSHQLGHASTQVTDLYTHI 344


>gi|310639697|ref|YP_003944455.1| integrase family protein [Paenibacillus polymyxa SC2]
 gi|309244647|gb|ADO54214.1| Integrase family protein [Paenibacillus polymyxa SC2]
          Length = 374

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 1/39 (2%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTN 300
           H LRHSFA+ L + G DL++I   LGH  + TT +IYT+
Sbjct: 314 HDLRHSFASVLYNQGTDLKAISEALGHSDIGTTNKIYTH 352


>gi|300767318|ref|ZP_07077230.1| conserved hypothetical protein [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300495137|gb|EFK30293.1| conserved hypothetical protein [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 190

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 67/177 (37%), Gaps = 36/177 (20%)

Query: 163 LYGCGLRISEALSL-----TPQNIMDDQSTLRIQGKGDKIRIVPL----------LPSVR 207
           ++ CGLR+ E L+L       ++ +    T+RI     K+  + L            S+R
Sbjct: 1   MFDCGLRVGEDLALRWSRVDFKHCIISIDTIRIYNSEVKVNDIGLKDMMLDTPKTTKSIR 60

Query: 208 KAILE--YYDLCP------------------FDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           K  L    YD  P                   DLN  I +       G PL     Q  +
Sbjct: 61  KIPLTDCAYDALPDLFKQTHPNEIIKLNRSDIDLNDFIFIKPTGKFHGYPLAITSAQVAM 120

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            ++    G+P     H  RH++   L   G D+  IQ ++GH    TT++Y  +  K
Sbjct: 121 PRICDRAGIP-RLNVHGCRHTYGVRLRETGVDINDIQDLMGHVDSETTKLYAEITPK 176


>gi|198276566|ref|ZP_03209097.1| hypothetical protein BACPLE_02762 [Bacteroides plebeius DSM 17135]
 gi|198270654|gb|EDY94924.1| hypothetical protein BACPLE_02762 [Bacteroides plebeius DSM 17135]
          Length = 201

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIY 298
           +++L R  G  +  T H  RH+ AT  LLS+G  + ++  +LGH  L TTQIY
Sbjct: 141 LKELGRQCGFKIRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIY 193


>gi|160886645|ref|ZP_02067648.1| hypothetical protein BACOVA_04657 [Bacteroides ovatus ATCC 8483]
 gi|156107056|gb|EDO08801.1| hypothetical protein BACOVA_04657 [Bacteroides ovatus ATCC 8483]
          Length = 406

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 20/147 (13%)

Query: 162 LLYGC--GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVRKAILEYYD 215
            ++ C  GL   +   L P +I    + +  +RI  K  K+   +PL P + + IL  Y+
Sbjct: 244 FIFSCLTGLAYVDIQLLHPHHIGMNAEGRRYIRINRKKTKVEAFIPLHP-IAEQILSLYN 302

Query: 216 LCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                   + + P+F      PL N       I +L   +G   + + H  RHSF T L+
Sbjct: 303 TA------DDEQPVF------PLPNRDALWFEIHELGVIIGKEDNLSYHQSRHSFGTFLI 350

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301
           S    + SI  ++GH  + TTQ Y  +
Sbjct: 351 SADIPIESISKMMGHSNIRTTQGYARI 377


>gi|254303771|ref|ZP_04971129.1| possible integrase [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148323963|gb|EDK89213.1| possible integrase [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 353

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 68/158 (43%), Gaps = 30/158 (18%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-------QGKG--------DKIRIVPLLPSV 206
           LL+  GLRI EA +L   +I  +  T+ +        GK           IR++ +   +
Sbjct: 189 LLFWTGLRIGEARALKIDDIDFNNKTISVTKSYTNLSGKSIITTPKTKGSIRVIKIDDVL 248

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR-RYLGLPLSTTAHTL 265
              I +Y D   + L+ N    +FR       N   ++   +    + LG  L    H L
Sbjct: 249 LSEIKDYIDKAKYILDDNF---IFR------FNKASYRYNFKNATIKVLGRDLR--VHDL 297

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           RHS A+ L++NG D+  I   LGH   S T +  NV S
Sbjct: 298 RHSHASFLINNGVDILLISKRLGH---SNTAMTLNVYS 332


>gi|121997131|ref|YP_001001918.1| phage integrase family protein [Halorhodospira halophila SL1]
 gi|121588536|gb|ABM61116.1| phage integrase family protein [Halorhodospira halophila SL1]
          Length = 379

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 38/63 (60%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             Q+  + + R  G+  S   H LRHS+A+ L+  G ++  ++ +LGH +++TT  Y ++
Sbjct: 303 CIQKPFKAVLRDSGIDESVRFHDLRHSYASLLVQGGVNIYEVKELLGHSQITTTMRYAHL 362

Query: 302 NSK 304
           +++
Sbjct: 363 SAQ 365


>gi|330897380|gb|EGH28799.1| Phage integrase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 240

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 27/131 (20%), Positives = 61/131 (46%)

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           L    + A ++  R       +    ++ I+  +    +  + +   +L +R++K  +  
Sbjct: 67  LQPGHVTALVATLRQDDYAPNTTSLYVNAIRGVMNEAWRHDLISHDQLLKIRSIKPVSGT 126

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
                     TL+  ++   + + +    R++AI+ +LYG G+R SE+++L    I   +
Sbjct: 127 RLVKGRNIRRTLIRELMEACAADPRPQGRRDAAIIAILYGSGMRKSESVNLDLSQIDFAE 186

Query: 186 STLRIQGKGDK 196
            +LR+ GKG+K
Sbjct: 187 RSLRVLGKGNK 197


>gi|218529622|ref|YP_002420438.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218521925|gb|ACK82510.1| integrase family protein [Methylobacterium chloromethanicum CM4]
          Length = 330

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 60/151 (39%), Gaps = 16/151 (10%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           GLR  E  SLT   +  + + +R+ GKGDK   +P+ P ++  +    +  P  +   + 
Sbjct: 157 GLRRREVASLTWPQVDFNAAVIRVVGKGDKPHTLPITPELQALLWPLREHHPTAVFTYV- 215

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA------------HTLRHSFATHLL 274
               +  R  P +   F R  R    Y GL                  H LRH+ A+   
Sbjct: 216 ---CQRTRTCPRSKRRFVRGERYPITYEGLSTQIGRSIVKAGIEDFRLHDLRHTAASRFQ 272

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
               DLR  Q++L H     T  Y +VN  +
Sbjct: 273 RANKDLRLTQTLLNHSSPKMTVRYAHVNEDD 303


>gi|188534989|ref|YP_001908786.1| Type 1 fimbriae regulatory protein, FimB [Erwinia tasmaniensis
           Et1/99]
 gi|188030031|emb|CAO97916.1| Type 1 fimbriae regulatory protein, FimB [Erwinia tasmaniensis
           Et1/99]
          Length = 186

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 35/75 (46%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +F   +G  ++     + IR       +P+  + H LRH+    L   G D R IQ  LG
Sbjct: 101 IFLSQKGGAMSRQQIYKLIRSYGAAAHIPVDLSPHMLRHACGFALADRGADTRLIQDYLG 160

Query: 289 HFRLSTTQIYTNVNS 303
           H  +  T +YT+ NS
Sbjct: 161 HRNIQHTVLYTSSNS 175


>gi|160938619|ref|ZP_02085971.1| hypothetical protein CLOBOL_03514 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438318|gb|EDP16077.1| hypothetical protein CLOBOL_03514 [Clostridium bolteae ATCC
           BAA-613]
          Length = 298

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 17/152 (11%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           + R + +L  +   G+R+SE   +T   I   Q+ +  +G+   IR V L   +   +  
Sbjct: 126 NERLALVLETICASGIRVSELSFITVAAIHKGQAEIECKGR---IRTVLLTRQLCSLLHS 182

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-----HTLRH 267
           Y        N++  + +F    GKPL+     R ++ L    G+  +  A     H LRH
Sbjct: 183 YAQ----KNNISSGM-IFVTKNGKPLDRSNIWREMKAL----GIEANVKAEKIFPHNLRH 233

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            FA        +L  +  ILGH  ++TT+IYT
Sbjct: 234 LFARTYYEIEKNLSKLADILGHRDINTTRIYT 265


>gi|300856340|ref|YP_003781324.1| putative phage-like integrase [Clostridium ljungdahlii DSM 13528]
 gi|300436455|gb|ADK16222.1| predicted phage-related integrase [Clostridium ljungdahlii DSM
           13528]
          Length = 393

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +F   +G  +N G   +   +  R L +P     H LRH++AT    N   L++I  +LG
Sbjct: 302 IFLSEQGNLINAGNLDKTWSKFLRSLNIP-HKKFHALRHTYATKQFENNIPLKTISMLLG 360

Query: 289 HFRLS-TTQIYTNV 301
           H  +  T  IYT+V
Sbjct: 361 HSSIEITANIYTHV 374


>gi|255100622|ref|ZP_05329599.1| integrase/recombinase [Clostridium difficile QCD-63q42]
          Length = 405

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 17/157 (10%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213
           R+ A++      G+R  + ++LT   I      +RI Q K  K   +PL   V +AI +Y
Sbjct: 236 RDYAMIMTAAVTGIRSVDIINLTFDAIDWINGEIRITQRKTGKTLALPLTTDVGEAIQDY 295

Query: 214 Y-------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
                   DL PF + L  + P  +   G+ L    F  Y    R+ LGLP   T H LR
Sbjct: 296 ILNGRPKSDL-PF-VFLRAKSPAVQ--LGRTLPYQTFNVY----RKKLGLP-KCTFHGLR 346

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            +  T+++ +G  + ++  +LGH  +  T+ Y +++S
Sbjct: 347 RAVGTNMVISGVPVTTVSQVLGHSSIEPTKQYISLDS 383


>gi|330955110|gb|EGH55370.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae Cit 7]
          Length = 312

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 18/198 (9%)

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           +LN+R         R L+ ++   L+  V  H++    WI       + +    G+R SE
Sbjct: 114 VLNIRKPSHGEGRDRRLSAEEERRLLAAVNAHSNPMLGWI-------VRIALETGMRSSE 166

Query: 173 ALSLTPQNIMDDQSTLRIQG-KGDKIRIVPL--LPSVRKAILEYYDLCPFDLNLNIQLPL 229
             SL    +   +  +R+   K D  R VPL  L +    +     + P D +L     +
Sbjct: 167 ITSLRRHQVDLKKRVVRLSDTKNDSARTVPLTRLATDTFQLAMSNPIRPIDCDL-----V 221

Query: 230 FRGIRGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           F G  GK    +   F +   +LR  LG+P     H LRH   + L+  G   + + +I 
Sbjct: 222 FFGEPGKEGKRSAYAFTKTWGKLRTKLGMP-DLRFHDLRHEAVSRLVEGGLSDQEVSAIS 280

Query: 288 GHFRLSTTQIYTNVNSKN 305
           GH  +   + YT++ +++
Sbjct: 281 GHKSMQMLKRYTHLRAED 298


>gi|257077443|ref|ZP_05571804.1| integrase [Enterococcus faecalis JH1]
 gi|294779636|ref|ZP_06745027.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis PC1.1]
 gi|256985473|gb|EEU72775.1| integrase [Enterococcus faecalis JH1]
 gi|294453293|gb|EFG21704.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis PC1.1]
          Length = 372

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 12/145 (8%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQS------TLRIQGKGD-KIRIVPLLPSVRKAILEYY 214
            L+  GLR+ EAL+L  +++  D        T+ ++ K + +I       S+R   L+  
Sbjct: 205 FLFMTGLRLGEALALNWEDVDFDSKVVYINKTMLVKNKREFRITTPKTKSSIRTVSLDDE 264

Query: 215 DLCPFDLNLNIQLPL----FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            L  F++    Q PL       I G  L       +++++     +P+    H LRHS A
Sbjct: 265 TLRLFEIWREQQSPLKINLIFFIDGGTLAKSTTHGWLKKICDLADVPV-IKIHALRHSHA 323

Query: 271 THLLSNGGDLRSIQSILGHFRLSTT 295
           + L++   D   I+  LGH R++TT
Sbjct: 324 SMLIALKEDSLVIKERLGHSRITTT 348


>gi|169829609|ref|YP_001699767.1| tyrosine recombinase xerC-like protein [Lysinibacillus sphaericus
           C3-41]
 gi|168994097|gb|ACA41637.1| Tyrosine recombinase xerC-like protein [Lysinibacillus sphaericus
           C3-41]
          Length = 395

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 74/178 (41%), Gaps = 20/178 (11%)

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-----------MDDQSTLR 189
           + L T+ ET+ I   N   L L+   G+R  EA  L  +NI             DQ   R
Sbjct: 197 LFLKTAKETENIT--NYTFLLLIAYTGIRRGEACGLQWKNIDFKNNTITIERTRDQKGTR 254

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCP---FDLNLNIQLPLFRGIR---GKPLNPGVF 243
                + +R + +  SV   + +Y+  C    F     I+   +  +    G+P++    
Sbjct: 255 TPKTKNSLRTIKVEKSVLAQLEKYHTWCKATLFAFGKKIKDTSYVFVSYQTGEPISDSGL 314

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               R++     LP   T H LRH+  T LL+ G +++ I   LG+      ++Y +V
Sbjct: 315 LYMTRRVIEKASLP-EITLHGLRHTHCTVLLNKGVNVKVIAERLGNTPAMIYEVYGHV 371


>gi|167760239|ref|ZP_02432366.1| hypothetical protein CLOSCI_02612 [Clostridium scindens ATCC 35704]
 gi|167662122|gb|EDS06252.1| hypothetical protein CLOSCI_02612 [Clostridium scindens ATCC 35704]
          Length = 475

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 8/85 (9%)

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS-NG 277
            D NL     +F    G+P+   V  R + +L +   LP     H+ RHS  T+ L  NG
Sbjct: 330 LDFNL-----VFASSCGRPIEGQVINRALGKLIKDHDLP-PVVFHSFRHSSITYKLKLNG 383

Query: 278 GDLRSIQSILGHFRLS-TTQIYTNV 301
           GD++S+Q   GH ++     +Y+++
Sbjct: 384 GDMKSVQGDSGHAQVKMVADVYSHI 408


>gi|85711398|ref|ZP_01042457.1| Integrase/recombinase, XerC/XerD family protein [Idiomarina baltica
           OS145]
 gi|85694899|gb|EAQ32838.1| Integrase/recombinase, XerC/XerD family protein [Idiomarina baltica
           OS145]
          Length = 186

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 5/141 (3%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--N 224
            LRIS+ LS+  +NI D++ TL ++GK  K   + L    R  I    +  P  + L  +
Sbjct: 39  ALRISDLLSIKFENINDERLTL-VEGKTSKQATIKLNDKARSIIGRIKEEHPDHIYLFQS 97

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
            +    +G+   P++     R    +   +G+ L T  H++R +   HL  N  D+  + 
Sbjct: 98  YRNQWSKGLDEAPISRRYVSRAFAAIGEEVGIKLGT--HSMRKTRGYHLYKNTNDIARVM 155

Query: 285 SILGHFRLSTTQIYTNVNSKN 305
            +L H   + T  Y  +  ++
Sbjct: 156 KMLRHSSEAVTLRYIGITQED 176


>gi|227535716|ref|ZP_03965765.1| bacteriophage integrase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227186683|gb|EEI66750.1| bacteriophage integrase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 376

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 35/68 (51%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LFR IR   L+     + +R + + L +  + T H LRH+  ++L++N  D+  I   LG
Sbjct: 284 LFRSIRHNMLSSTAINKDLRTIEKNLDIYPAITFHGLRHTHVSYLIANHVDINYISKRLG 343

Query: 289 HFRLSTTQ 296
           H     TQ
Sbjct: 344 HANTMITQ 351


>gi|207092586|ref|ZP_03240373.1| bacteriophage-related integrase [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 221

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 92/216 (42%), Gaps = 36/216 (16%)

Query: 95  IKSFLKYLKKRKITTESNI--LNMRNLKKSNSL-PRALNEKQALTLVDNVLLHTSHETKW 151
           +KSFL++ ++   T ++    + M+N K+   + P +LNE +A      +L  T      
Sbjct: 4   LKSFLEFCEQEGYTEKTPYFKITMKNAKEGEKINPFSLNEIKA------ILQSTP----- 52

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNI------MDDQSTLRIQG------KGDKIRI 199
            D R  A L   +  GLR  E L+L   +I      ++   +L + G          IR 
Sbjct: 53  -DLRLKAFLTTAFFTGLRTGEQLALLWSDIDFKNKKINIDKSLNLSGVITSPKNKPSIRE 111

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           V LL  V K + E     P +  +     +F      P     FQ   ++L   L L   
Sbjct: 112 VDLLEPVEKILKELKASEPTNKKM-----IFLNT---PKRTQDFQLMFKKLLEALNLK-D 162

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
              +T RH+FA+ +LS G +   +   LGH  L+TT
Sbjct: 163 RKLYTTRHTFASLMLSQGEEAMWVSKTLGHKDLNTT 198


>gi|152995811|ref|YP_001340646.1| phage integrase family site specific recombinase [Marinomonas sp.
           MWYL1]
 gi|150836735|gb|ABR70711.1| site-specific recombinase, phage integrase family [Marinomonas sp.
           MWYL1]
          Length = 150

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 17/155 (10%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           +L L+ Y   T +  ++   Y      +Q  + +   E+RAF++  +   I  +  K +L
Sbjct: 13  ELRLRGYSLKTEKSYLYWIKYFIRFHKLQHPQNMGAEEVRAFLAVEKNVAINTQ--KSAL 70

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           +     L +L  + +      L  ++ K+   LP  L    A   + N+L         +
Sbjct: 71  NA----LAFLYNKLLNQPLGDLGFQHAKQGLRLPIVL----AANEIQNIL-------GCM 115

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           + R+  I  LLYG GLRISE L +  Q+I  DQ +
Sbjct: 116 NERDHLIFSLLYGSGLRISECLRIRIQDINLDQGS 150


>gi|313889062|ref|ZP_07822720.1| site-specific recombinase, phage integrase family [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312844935|gb|EFR32338.1| site-specific recombinase, phage integrase family [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 342

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 53/132 (40%), Gaps = 13/132 (9%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
            L +LY  G+RISE L +  Q ++D    +  Q      +I  +L +        Y   P
Sbjct: 193 FLRMLYETGMRISEGLGVCTQTVIDCSIKIDRQFNSTNKKITYILKTDNS-----YRTAP 247

Query: 219 FDLNLNIQLPLFRGIRGKPLN--PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
                 I   L+R ++    +    +F         Y      T+ H  RH+ AT L+S 
Sbjct: 248 ------ISAELYRDLKNATFDIEGRIFHDLTYIQVYYFLKKHKTSPHCFRHTRATLLVSA 301

Query: 277 GGDLRSIQSILG 288
           G DL  +  I+G
Sbjct: 302 GIDLTIVAHIIG 313


>gi|253577741|ref|ZP_04855025.1| tyrosine recombinase xerC [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251842867|gb|EES70932.1| tyrosine recombinase xerC [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 321

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           + P   +R I+Q     G+    T H LRH+ AT  L  G  L+ +Q  LGH  ++TTQ 
Sbjct: 238 ITPRQIERIIKQAGIASGIQKQPTPHWLRHTNATLALLQGASLQQVQESLGHSHINTTQR 297

Query: 298 Y 298
           Y
Sbjct: 298 Y 298


>gi|189466917|ref|ZP_03015702.1| hypothetical protein BACINT_03299 [Bacteroides intestinalis DSM
           17393]
 gi|212694231|ref|ZP_03302359.1| hypothetical protein BACDOR_03757 [Bacteroides dorei DSM 17855]
 gi|224026268|ref|ZP_03644634.1| hypothetical protein BACCOPRO_03024 [Bacteroides coprophilus DSM
           18228]
 gi|253571401|ref|ZP_04848807.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|254882520|ref|ZP_05255230.1| transposase [Bacteroides sp. 4_3_47FAA]
 gi|317480624|ref|ZP_07939712.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|329965204|ref|ZP_08302135.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|189435181|gb|EDV04166.1| hypothetical protein BACINT_03299 [Bacteroides intestinalis DSM
           17393]
 gi|212663218|gb|EEB23792.1| hypothetical protein BACDOR_03757 [Bacteroides dorei DSM 17855]
 gi|224019504|gb|EEF77502.1| hypothetical protein BACCOPRO_03024 [Bacteroides coprophilus DSM
           18228]
 gi|251838609|gb|EES66694.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|254835313|gb|EET15622.1| transposase [Bacteroides sp. 4_3_47FAA]
 gi|316903250|gb|EFV25116.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|328523567|gb|EGF50664.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 402

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 15/146 (10%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY-YDLCP 218
           L+  Y  G+   +   LTP N+       R Q    ++ I    P++++ + +Y  D  P
Sbjct: 245 LFSFYTRGMSFIDMAQLTPSNLHGSTLIYRRQKTSQQLHI-KWEPAMQEIVAKYKTDDSP 303

Query: 219 FDLNLNIQLPLFRGIRGKPL---NPGVFQRYIRQLRR---YLGLPLSTTAHTLRHSFATH 272
           +       LP+ +G  G          + R  +QL++    +GL +  T +  RHS+A+ 
Sbjct: 304 Y------LLPIAKG-EGAIFWRQYKNAYSRITKQLKKIGEMIGLSVPLTTYVARHSWASI 356

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIY 298
             S    + +I   LGH    TTQIY
Sbjct: 357 AKSKNVPVSTISEALGHDSEKTTQIY 382


>gi|126437019|ref|YP_001072710.1| phage integrase family protein [Mycobacterium sp. JLS]
 gi|126236819|gb|ABO00220.1| phage integrase family protein [Mycobacterium sp. JLS]
          Length = 424

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 93/215 (43%), Gaps = 31/215 (14%)

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEKQALTLVDNVLLHTSHETKWID 153
           + + LKY ++     ++       +K+   LP +   E++ LT  + ++L      K  D
Sbjct: 185 VGAVLKYAQRTGKVAKNVAFE---IKRDEDLPEQGERERRYLTHAELLML-----AKAAD 236

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-----IQGKG--------DKIRIV 200
              +  L L Y CGLR  EA++L  +++ D   T+R     + GKG         + R V
Sbjct: 237 RFETLTLVLGY-CGLRFGEAVALRRRHVGDRMLTVRSSATAVTGKGIVESTTKTKRDRHV 295

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+   V K +       P D N  +    F   +G  L  G ++         +G+    
Sbjct: 296 PVPEPVWKKLKAE---LPADPNALV----FPSRKGGFLPLGEYRWAFDNACADIGID-GL 347

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             H LRH+ A+  +S G +++ +Q +LGH   + T
Sbjct: 348 VPHGLRHTTASLAISAGANVKVVQRLLGHATAAMT 382


>gi|327462214|gb|EGF08541.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK1]
          Length = 356

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 102/276 (36%), Gaps = 41/276 (14%)

Query: 68  YTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL- 125
           Y   R  ++   TQ  +   ++ R+LS + S  KYL +     +      RN+ K  +  
Sbjct: 85  YLRERPLLNANTTQNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATK 144

Query: 126 -------PRALNEKQALTLVDNVLLHTSHETKWID-------------------ARNSAI 159
                   RA N KQ L L D     T    ++ID                    R+ AI
Sbjct: 145 KKKETLAARAENIKQKLFLGD----ETEGFLQYIDREYPKKLSNRALSSFNKNKERDLAI 200

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP- 218
           + LL   G+R+SEA++L  ++I      + +  KG K   V +       + EY  +   
Sbjct: 201 IALLLASGVRLSEAVNLDLKDINLKMMVIEVTRKGGKRDSVNVAAFAMSYLEEYLSIRSK 260

Query: 219 -FDLNLNIQLPLFRGIRGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
            +              RG P  ++    ++ + +        +  T H LRH+ AT L  
Sbjct: 261 RYKAEKTDTAFFLTEYRGNPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYD 318

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGD 308
                  +   LGH     T +YT++     KN  D
Sbjct: 319 ATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|325125902|gb|ADY85232.1| Integrase/recombinase, phage integrase family [Lactobacillus
           delbrueckii subsp. bulgaricus 2038]
          Length = 323

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 12/155 (7%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A++  L   G+R+ E + L  Q+I   +    + GKG K R V    +  K  L+ Y
Sbjct: 167 RDLAMIDFLSTTGMRVGELVLLNRQDINFQERECIVFGKGSKER-VTYFDARSKLHLQRY 225

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLN----PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
                D N      LF G++  P N     GV  R ++ +   LG+  +   H  R + A
Sbjct: 226 LESRDDAN----EALFVGLKW-PHNRLTISGVESR-LKVVGNRLGIS-AVYPHKFRRTLA 278

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           T  +  G  +  +Q +L H R+ TT  Y  V  +N
Sbjct: 279 TKAIDKGMPIEQLQRLLEHSRIDTTLHYAMVKQQN 313


>gi|307294799|ref|ZP_07574641.1| integrase family protein [Sphingobium chlorophenolicum L-1]
 gi|306879273|gb|EFN10491.1| integrase family protein [Sphingobium chlorophenolicum L-1]
          Length = 399

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 97/243 (39%), Gaps = 31/243 (12%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            +  ++  ++  +I K+ +  +   ++KR L+   S +    K  +   +   + + +K 
Sbjct: 149 ALNAITVADVNRWIGKQ-SATLAPATVKRQLNTFNSIMNEAVKEGVIDANPSQHAKRVKA 207

Query: 122 SNSLPRALNEKQALTLVDNV-----------LLHTSHETKWIDARNSAILYLLYGCGLRI 170
                R + EK+ L +++              L    +  W+       +   Y  G+R 
Sbjct: 208 GEERQRFVTEKEWLVILETCDRIEQEQEERRELMPQEKRGWL----RHFVAWAYNSGMRR 263

Query: 171 SEALSLTPQNIMD---DQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           SE L L   N+ +   D + + +   K  K R V     +RK IL      P +   N  
Sbjct: 264 SEILGLEWDNVREVDADHTVVEVLNSKNGKSRYVTCTAEMRK-ILTALKALPREKGDN-- 320

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
             LF      PL+    +R +  L +  GL      H LR S AT L+S G D+R++   
Sbjct: 321 -RLF------PLSLTTLKRALTALWKETGLK-DVRLHDLRRSHATILVSKGFDVRTVAGR 372

Query: 287 LGH 289
           LGH
Sbjct: 373 LGH 375


>gi|257883999|ref|ZP_05663652.1| phage integrase [Enterococcus faecium 1,231,501]
 gi|257819837|gb|EEV46985.1| phage integrase [Enterococcus faecium 1,231,501]
          Length = 220

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 32/71 (45%)

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
           RG   +P++     R I  +R+      S T H LRH+F T        + SI   L H 
Sbjct: 127 RGEVNQPVHIDYLNRRINAIRQRHPYLASLTPHKLRHTFGTLASLGSASMNSISKALTHS 186

Query: 291 RLSTTQIYTNV 301
            L TT+IY N 
Sbjct: 187 ELKTTRIYVNA 197


>gi|253570203|ref|ZP_04847612.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840584|gb|EES68666.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 408

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 16/145 (11%)

Query: 164 YGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVRKAILEYYDLCPF 219
           Y  GL  ++   L P +I    + +  +RI  K   +   +PL P + + IL  Y+    
Sbjct: 251 YFTGLAYADIKQLHPCHIGTTAEGRRFIRINRKKTGVEAFIPLHP-IAEQILSLYN---- 305

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
               +I  P+F      P    ++   IR++   LG     + H  RH F   L+S    
Sbjct: 306 --TTDIHSPVF----PLPSRDSIWHE-IREIGVILGRHDDLSYHQARHGFGVLLISESVS 358

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSK 304
           + SI  ++GH  +STTQ Y  +  +
Sbjct: 359 IESIAKMMGHSNISTTQGYARITEE 383


>gi|210614273|ref|ZP_03290144.1| hypothetical protein CLONEX_02357 [Clostridium nexile DSM 1787]
 gi|210150757|gb|EEA81766.1| hypothetical protein CLONEX_02357 [Clostridium nexile DSM 1787]
          Length = 431

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 24/33 (72%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           H LRH++ ++LLSNG   + +Q +LGH  +STT
Sbjct: 373 HQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTT 405


>gi|152976339|ref|YP_001375856.1| phage integrase family protein [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152025091|gb|ABS22861.1| phage integrase family protein [Bacillus cytotoxicus NVH 391-98]
          Length = 376

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 85/189 (44%), Gaps = 36/189 (19%)

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           +QA+T +D   L  S+   ++ A ++         G+RI E L+L   +I  ++ T+ +Q
Sbjct: 172 EQAMTFIDCAKLKGSYYIAFVLALHT---------GMRIGEVLALQWGDIDFEKKTIHVQ 222

Query: 192 -------GK---GDKI-----RIVPLLPSVRKAILEYYDL---CPFDLNLNIQLPLFRGI 233
                  GK   G+       R++P+   +   ++EY       P DL       L    
Sbjct: 223 RTLTLVDGKYVLGETKTEASNRVIPMTEELVDELVEYQKYKKENPLDL-------LICTR 275

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
             K ++P   +  ++ L   + +P     H +R +F T L+ +  + + +  +LGH  +S
Sbjct: 276 NKKIVHPYTIRYQMKALCEAIDVPY-IRFHDIRRTFTTILIDSNVNAKVVAKLLGHTNVS 334

Query: 294 TT-QIYTNV 301
           T+  IYT+V
Sbjct: 335 TSLNIYTDV 343


>gi|317487260|ref|ZP_07946055.1| phage integrase [Bilophila wadsworthia 3_1_6]
 gi|316921450|gb|EFV42741.1| phage integrase [Bilophila wadsworthia 3_1_6]
          Length = 347

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 23/155 (14%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL 216
             L LLY  G R+ E   +  ++I  +  T+   + K    R +P++  +R  ILE    
Sbjct: 199 VFLILLY-TGFRLGECWRIECRDINLELGTITAWKTKNGHPRTIPIVDKIR-PILER--- 253

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR----QLRRYLGLP--LSTTAHTLRHSFA 270
                       +F       L P    R+      +++R LGL   +    H LRH+ A
Sbjct: 254 -----------KIFEAGENGKLFPTADNRWFESAWNRIKRLLGLEKDVQLVPHALRHTCA 302

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           + L   G  +  I+  +GH  + TT  YT+++ K+
Sbjct: 303 SRLAQRGVSMMVIKEWMGHSNIKTTMRYTHLSPKD 337


>gi|312878076|ref|ZP_07738012.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795155|gb|EFR11548.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 278

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 104/256 (40%), Gaps = 64/256 (25%)

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL--NEKQALTLVDNVLLHTSHE 148
           SLS IK     L         N L +RN+ ++ +LP+    NE + LTL +        +
Sbjct: 16  SLSTIKHIHVILHSALDQALKNGLVVRNVSEATTLPKVKTKNEIRVLTLQE--------Q 67

Query: 149 TKWIDA----RNSAILYLLYGCGLRISEALSLT------PQNIMDDQSTLRIQGKGDK-- 196
            ++I A    R      L    G+R+ E L+L        +  +  +S+LR     DK  
Sbjct: 68  QRFIAALEGERLRPAFLLALASGVRLGELLALKWDCVNLKEGTITIKSSLRRIKTYDKNL 127

Query: 197 ----------------IRIVPLLPSVRKAILEY--------------YDLCPFDLNLNIQ 226
                           IR +P+ P + + + E+              Y+    D NL   
Sbjct: 128 PTKTMLAFQEPKTAAGIRTIPVPPVILEELKEHRKRQLEERLQAGSLYE----DNNL--- 180

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
             +F    G P+ P  F R   ++     L ++   H LRH++AT LL      + +Q +
Sbjct: 181 --VFATELGTPIEPRNFLRVFYRIIEKANLDINF--HALRHTYATRLLEANEHPKVVQEL 236

Query: 287 LGHFRLSTT-QIYTNV 301
           LGH  +STT  IY++V
Sbjct: 237 LGHNDISTTLNIYSHV 252


>gi|311063475|ref|YP_003970200.1| DNA integration/recombination/inversion protein [Bifidobacterium
           bifidum PRL2010]
 gi|310865794|gb|ADP35163.1| DNA integration/recombination/inversion protein [Bifidobacterium
           bifidum PRL2010]
          Length = 313

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 32/156 (20%)

Query: 158 AILYLLYGC--GLRISEALSLT-PQNIMDDQSTLR--IQGKGDKIRIVPLLPSVRKAILE 212
           A+L +++G   GLR  E   +    +I D+   +R  + GKG K R++P+   + +AI  
Sbjct: 140 AVLAVMFGAWMGLRRLEMAQINIATDIEDNPEEMRLLVHGKGIKERVLPVPGELARAIRR 199

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL----STTAHTLRHS 268
                             RG  G  + PG F  +      Y+G  +    S  +H+LR  
Sbjct: 200 ------------------RG--GDWIFPGRFDGH--ACADYVGTRIKEATSFPSHSLRRR 237

Query: 269 FATHLL-SNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           FAT      G D+  +  +LGH  +STT  Y  +N+
Sbjct: 238 FATFAYYRTGCDILLVSQLLGHSSVSTTMRYIGINT 273


>gi|295084228|emb|CBK65751.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 403

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 108/278 (38%), Gaps = 26/278 (9%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           + Q+Y+   R F  ++     +K  I    Q S  E   +I ++    +  R++K+    
Sbjct: 127 SFQTYKSKLRIFCEWVEQTGLDKKNICFFEQNSICEFLCYIVEK--HDVSQRTVKKYTQI 184

Query: 95  IKSFLKYLKKRKITTESN----ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           +  F  YL K K   ++N    I NM ++K   + P    E+Q L          S   K
Sbjct: 185 LHGFFDYLLKVKRIIDTNPVHDIPNMGSIKDEAAKPIPDRERQLL----------SKHIK 234

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
             D +   +  + Y C +R +E   L   +I  D   + +     K R    +   R+  
Sbjct: 235 EHDPQLWLVCQMEYYCAIRPNECRQLQIGDIDFDNHIITVPKDISKNRQTESVNIPRQLY 294

Query: 211 LEYYDLCPFDLNLNIQLPLF-----RGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHT 264
              Y++    LNL+     F      G+ GK  L    F+    ++R  L +      ++
Sbjct: 295 DYIYNI----LNLDTHPKDFYIFSHNGVPGKTMLGKNNFRFRFDKIRDRLNVSNQYKLYS 350

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +H+    L++ G D   +Q    H  + TT+ Y   N
Sbjct: 351 FKHTGGVKLVNEGIDTWELQRHFRHKSIDTTERYIRRN 388


>gi|260576807|ref|ZP_05844791.1| integrase family protein [Rhodobacter sp. SW2]
 gi|259020950|gb|EEW24262.1| integrase family protein [Rhodobacter sp. SW2]
          Length = 427

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 3/67 (4%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G+P+     +R+  Q+++  GL      H LRH+FA+ L+S G  L  I  +LGH ++ T
Sbjct: 329 GQPVQ--EVRRFWAQIQQECGL-QEVHIHDLRHTFASLLVSGGASLEMIGKLLGHSQMQT 385

Query: 295 TQIYTNV 301
           T  Y ++
Sbjct: 386 TLRYAHL 392


>gi|149921966|ref|ZP_01910409.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149817228|gb|EDM76706.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 531

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 29/54 (53%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           + + R   G+  S   HTLRH+FATH ++ G  L  +   LGH  + TT  Y +
Sbjct: 407 VNRARAGAGIERSVGVHTLRHTFATHAVAAGVPLSLVSRQLGHSDVRTTMRYAH 460


>gi|329957039|ref|ZP_08297606.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
 gi|328523307|gb|EGF50406.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
          Length = 382

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 17/179 (9%)

Query: 133 QALTLVDNVLLHTSHETKWIDAR-----NSAILYLLYGCG-LRISEALSLTPQNIMDDQS 186
           Q   +    +L  + E  +I  R     +  I    Y CG +  ++  +LT  NI + + 
Sbjct: 191 QKRAIAKTEILKFTKEVDYIGKRQYVQLSKDIFIFSYLCGGINFTDIANLTKANITNGRI 250

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYD------LCPFDLNLNI-QLPLFRGIRGKPLN 239
               Q  G  I++     +++  I++ Y+      L P  LN NI + PL +  R   + 
Sbjct: 251 HYIRQKTGKLIKLGISEEAMQ--IIKKYESESKGYLFPI-LNANIHKTPLQKQNRIHKM- 306

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            G   + ++ +   L +  + T +  RHSFA+ L  +G  +  I   LGH  LSTTQ+Y
Sbjct: 307 LGNVNKNLKLIAAQLNVDANMTTYVARHSFASVLKKSGVSIALISEALGHSDLSTTQVY 365


>gi|322516798|ref|ZP_08069700.1| phage integrase family site-specific recombinase [Streptococcus
           vestibularis ATCC 49124]
 gi|322124635|gb|EFX96099.1| phage integrase family site-specific recombinase [Streptococcus
           vestibularis ATCC 49124]
          Length = 189

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 12/154 (7%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY- 213
           R+ AI+ LL   G+R+SEA++L  ++I      + +  KG K   V +    R  +  Y 
Sbjct: 29  RDLAIIALLLASGVRLSEAVNLDLKDINLKMMVIDVTRKGGKRDSVNVASFARPYLENYL 88

Query: 214 ------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                 Y     D+ L   L  +RG+  + ++    ++ + +  +     +  T H LRH
Sbjct: 89  SIRDKRYKAEKQDVAL--FLTEYRGVPNR-IDASSIEKMVAKYSQ--DFKIRVTPHKLRH 143

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + AT L         +   LGH     T +YT++
Sbjct: 144 TLATRLYDATKSQVLVSHQLGHASTQVTDLYTHI 177


>gi|291526844|emb|CBK92430.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 431

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 24/33 (72%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           H LRH++ ++LLSNG   + +Q +LGH  +STT
Sbjct: 373 HQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTT 405


>gi|288919364|ref|ZP_06413698.1| integrase family protein [Frankia sp. EUN1f]
 gi|288349253|gb|EFC83496.1| integrase family protein [Frankia sp. EUN1f]
          Length = 411

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 3/66 (4%)

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLST 294
           +P      +  +R++   LG   + T H LRH+ A  ++ +    LR +Q+ILGH  L+T
Sbjct: 304 RPFTYDALRAVLRRVNEQLGS--NWTMHDLRHTCAIRMVRDEALSLRDVQTILGHVHLTT 361

Query: 295 TQIYTN 300
           TQIY  
Sbjct: 362 TQIYVE 367


>gi|213417521|ref|ZP_03350663.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 116

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 5/82 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L +ER LS +TLQ+Y+   RQ    +A   E    +++ +Q     +R+F  + R 
Sbjct: 13  FLRYLGVERQLSPITLQNYQ---RQLDAIIALAGE--TGLKSWQQCDAAIVRSFAVRSRR 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYL 102
           + +G  SL   LS ++SF  +L
Sbjct: 68  KGLGPASLALRLSALRSFFDWL 89


>gi|169824629|ref|YP_001692240.1| putative transposon integrase [Finegoldia magna ATCC 29328]
 gi|167831434|dbj|BAG08350.1| putative transposon integrase [Finegoldia magna ATCC 29328]
          Length = 411

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 85/219 (38%), Gaps = 53/219 (24%)

Query: 131 EKQALTLVDNVLL-----HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           +K+A+T+ + VL      ++    KW       I  ++   G+R+ E   L   ++  D 
Sbjct: 178 KKKAMTIEEQVLFEEYLSNSDEYKKWY-----PIFIVMLWTGMRVGEVTGLQWDDLDFDN 232

Query: 186 STLRI--------QGKG-------------DKIRIVPLLPSVRKAILEYYDLCP-FDLNL 223
             + +        +GKG                R +P++  V+ A L   +L   F +  
Sbjct: 233 GLINVNRTLVYYSKGKGLNNRYAINTPKTASGKRSIPMVQKVKDAFLMERELQKTFGIEC 292

Query: 224 NIQLPLFRGIR-----GKPLNPGVFQRYIRQLRRYLGLPLST---------------TAH 263
              +  F+        GK  N G   + +R++ R   L +                 + H
Sbjct: 293 CDSIDGFKDFVFLNRFGKVHNNGTLNKALRRIVRDCNLSIMDKNKSSSNDILLVPHLSNH 352

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
             RH+F T L     + +++QSILGH  +STT  IY + 
Sbjct: 353 IFRHTFTTRLNEQNINTKAMQSILGHSDISTTMDIYVDA 391


>gi|187928906|ref|YP_001899393.1| integrase family protein [Ralstonia pickettii 12J]
 gi|187725796|gb|ACD26961.1| integrase family protein [Ralstonia pickettii 12J]
          Length = 566

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 65/161 (40%), Gaps = 21/161 (13%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKGDKIRIVPLLPSVRKAI---LE 212
           +L   Y  GLR SE ++    ++  D +    L + GKG +   V + P  R A+   L 
Sbjct: 387 VLDFSYATGLRASELVTSKLGDLEVDAAGDHWLNLVGKGRRAGKVAVPPLARSALDRHLV 446

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS------------- 259
              L       N Q+ L   + G+        R    +RR+                   
Sbjct: 447 ERSLPVSVARWNPQVRLIGAVVGESETGITTARLWAVVRRFFWTAAEIIEPDHPALAQKL 506

Query: 260 --TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              + H +RH+ ATH L+ G +L +++  L H  +STT IY
Sbjct: 507 RQASPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIY 547


>gi|319950766|ref|ZP_08024656.1| putative transposase [Dietzia cinnamea P4]
 gi|319435567|gb|EFV90797.1| putative transposase [Dietzia cinnamea P4]
          Length = 94

 Score = 40.4 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           RG+ L P   +   R  R   G+      H LRH+F T L   G DL  +Q++LGH  + 
Sbjct: 7   RGQGLTPAGLRTIFRYHREISGVT-GGHPHALRHTFGTVLAEAGVDLAVMQALLGHAHVD 65

Query: 294 TTQIYTNV 301
            T  Y ++
Sbjct: 66  ITARYVHL 73


>gi|305681466|ref|ZP_07404273.1| site-specific recombinase, phage integrase family [Corynebacterium
           matruchotii ATCC 14266]
 gi|305659671|gb|EFM49171.1| site-specific recombinase, phage integrase family [Corynebacterium
           matruchotii ATCC 14266]
          Length = 411

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +F    G+P N        + L + +G+  +TT H LRH +A+ L+ +G  +  +Q +LG
Sbjct: 308 IFAAKSGEPYNSLAIGTQFKNLTKRVGV--TTTFHALRHYYASKLIESGVSVSVVQRVLG 365

Query: 289 HFRLSTT 295
           H   +TT
Sbjct: 366 HSSPATT 372


>gi|317057150|ref|YP_004105617.1| integrase family protein [Ruminococcus albus 7]
 gi|315449419|gb|ADU22983.1| integrase family protein [Ruminococcus albus 7]
          Length = 378

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 22/175 (12%)

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------GKGD----- 195
           E+K  D     I+ +L   G+R  E L L  ++I  + +T+ I        GK +     
Sbjct: 188 ESKPWDEDFKRIIKVLLYTGMRSGECLGLAWEDIDFENNTISINHTLTDIGGKHELTDPK 247

Query: 196 ---KIRIVPLLPSVRKAIL---EYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYI 247
               IRI+ +   ++K +L   +Y +     L  +   P  +F   RG   +     + +
Sbjct: 248 TESSIRIIGMGQELKKVLLAQKDYIEKLKLALGDDFAHPEMVFVSARGNYRDRNSVYQSL 307

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNV 301
           ++  +        T H LRH  AT LL++G DL+ +   LGH  ++ T  IY +V
Sbjct: 308 KRFTKGTEFE-DMTLHQLRHCNATMLLNSGIDLKVVSEHLGHCDVNVTADIYADV 361


>gi|298375473|ref|ZP_06985430.1| integrase [Bacteroides sp. 3_1_19]
 gi|298267973|gb|EFI09629.1| integrase [Bacteroides sp. 3_1_19]
          Length = 410

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYT 299
           G   + ++++ R     +  T H  RH+ AT  LLS+G  + ++  +LGH  + TTQIY 
Sbjct: 322 GSCNKILKEIGRQCSFKVRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYA 381

Query: 300 NVNSK 304
            + ++
Sbjct: 382 KITAQ 386


>gi|254362755|ref|ZP_04978838.1| possible integrase/recombinase [Mannheimia haemolytica PHL213]
 gi|261492677|ref|ZP_05989227.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261495898|ref|ZP_05992322.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|153094383|gb|EDN75234.1| possible integrase/recombinase [Mannheimia haemolytica PHL213]
 gi|261308442|gb|EEY09721.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261311663|gb|EEY12816.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 267

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 8/158 (5%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           ++  +   G R+SE + +  ++I      L +  KG K+R + +  S++K   E+     
Sbjct: 116 VIRFMAATGSRVSELIQIKCEHI--KIGYLDLYSKGGKLRRIYIPKSLQKECSEW----- 168

Query: 219 FDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
             LN      +F    G  +   G+  +     RRY   P     H+ RH FA   L   
Sbjct: 169 LRLNNKHNGFIFLNKYGDRITTRGIASQLKVFARRYKLDPKIVYPHSFRHRFAKSFLERF 228

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            D+  +  ++GH  + TT+IY    S    + + +I D
Sbjct: 229 NDIAFLADLMGHESIETTRIYLRKTSTEQQEIVNKIID 266


>gi|301059797|ref|ZP_07200691.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300446123|gb|EFK09994.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 375

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 56/112 (50%), Gaps = 18/112 (16%)

Query: 202 LLPSVRKAILEYYDLCPF--------DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           L+P  +KA+LE+     F        D+  ++   +F  + G P     F+R+    ++ 
Sbjct: 251 LMPRTKKALLEWQSHLDFMRHRKRITDIKTDL---VFCHLDGSP-----FRRFDTAWKKA 302

Query: 254 LGLP--LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           L L        H LRH+F ++L+ +GG ++  + ++GH  +S T  Y+++ +
Sbjct: 303 LDLAGIKGLHFHDLRHTFCSNLIISGGGIKDAKEMIGHKDISMTDRYSHLTN 354


>gi|218129653|ref|ZP_03458457.1| hypothetical protein BACEGG_01230 [Bacteroides eggerthii DSM 20697]
 gi|217988383|gb|EEC54706.1| hypothetical protein BACEGG_01230 [Bacteroides eggerthii DSM 20697]
          Length = 382

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 17/179 (9%)

Query: 133 QALTLVDNVLLHTSHETKWIDAR-----NSAILYLLYGCG-LRISEALSLTPQNIMDDQS 186
           Q   +    +L  + E  +I  R     +  I    Y CG +  ++  +LT  NI + + 
Sbjct: 191 QKRAIAKTEVLKFTKEVDYIGKRQYVQLSKDIFIFSYLCGGINFTDIANLTKANITNGRI 250

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYD------LCPFDLNLNI-QLPLFRGIRGKPLN 239
               Q  G  I++     +++  I++ Y+      L P  LN NI + PL +  R   + 
Sbjct: 251 HYIRQKTGKLIKLGISEEAMQ--IIKKYESESKGYLFPI-LNANIHKTPLQKQNRIHKM- 306

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            G   + ++ +   L +  + T +  RHSFA+ L  +G  +  I   LGH  LSTTQ+Y
Sbjct: 307 LGNVNKNLKLIAAQLNVDANMTTYVARHSFASVLKKSGVSIALISEALGHSDLSTTQVY 365


>gi|190015061|ref|YP_001966714.1| site-specific recombinase, phage integrase family [Bacillus cereus]
 gi|190015327|ref|YP_001967039.1| site-specific recombinase, phage integrase family [Bacillus cereus]
 gi|208702180|ref|YP_002267301.1| site-specific recombinase, phage integrase family [Bacillus cereus
           H3081.97]
 gi|218848243|ref|YP_002455093.1| site-specific recombinase, phage integrase family [Bacillus cereus
           AH820]
 gi|229125059|ref|ZP_04254223.1| Site-specific recombinase, phage integrase [Bacillus cereus
           95/8201]
 gi|116584737|gb|ABK00852.1| site-specific recombinase, phage integrase family [Bacillus cereus]
 gi|116585008|gb|ABK01117.1| site-specific recombinase, phage integrase family [Bacillus cereus]
 gi|208658035|gb|ACI30405.1| site-specific recombinase, phage integrase family [Bacillus cereus
           H3081.97]
 gi|218540294|gb|ACK92690.1| site-specific recombinase, phage integrase family [Bacillus cereus
           AH820]
 gi|228658403|gb|EEL14079.1| Site-specific recombinase, phage integrase [Bacillus cereus
           95/8201]
          Length = 230

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 36/183 (19%), Positives = 76/183 (41%), Gaps = 13/183 (7%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G  K T+  Y    R F+         ++ I+ +  ++   ++ +I+K   +++   ++ 
Sbjct: 41  GFRKRTIDDYSKLFRYFM--------RELNIEKVEIITAAHVQMYINKLLNRELAPATVN 92

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             +S +KS  K L ++     +  ++   L+   +    LN  Q        +     +T
Sbjct: 93  IRISALKSVFKRLNEQGYIKSNPAVDFVKLRTDEAPIFTLNHNQI-----KRIFRVVDKT 147

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
            +   R+   + L+  CGLR++E   L   +I  D  T+ + G  +K R    +P  +K 
Sbjct: 148 TYAGYRDYCAMLLMLHCGLRVNEVNQLEANDIDFDNLTIMLAGAKNKNRKTRAVPMTKKV 207

Query: 210 ILE 212
             E
Sbjct: 208 AEE 210


>gi|210610681|ref|ZP_03288562.1| hypothetical protein CLONEX_00752 [Clostridium nexile DSM 1787]
 gi|210152314|gb|EEA83320.1| hypothetical protein CLONEX_00752 [Clostridium nexile DSM 1787]
          Length = 413

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 21/138 (15%)

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQL- 250
           IRI+P++ +V +A+ + Y     +     ++      +F    G   NP    R I+++ 
Sbjct: 269 IRIIPMMDTVYEALKKEYAFQEENGFNETEIDGMTGFVFSNRFGNVHNPQAINRAIKRIY 328

Query: 251 --------------RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT- 295
                         +R   L    + H LRH+F +    N  +L+ IQS++GH  + TT 
Sbjct: 329 EAYNAEEVVKAAKEKREPILIPHFSCHHLRHTFCSRFCENETNLKVIQSVMGHADIETTM 388

Query: 296 QIYTNVNSKNGGDWMMEI 313
            IY  V      + + E+
Sbjct: 389 DIYAEVTETKKYESIQEL 406


>gi|154496597|ref|ZP_02035293.1| hypothetical protein BACCAP_00889 [Bacteroides capillosus ATCC
           29799]
 gi|150274230|gb|EDN01321.1| hypothetical protein BACCAP_00889 [Bacteroides capillosus ATCC
           29799]
          Length = 377

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 10/76 (13%)

Query: 235 GKPLNPGV----FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
           G PL+P      F R+IR+      LP   T H LRH+FAT   + G  L  I   LGH 
Sbjct: 294 GHPLSPNAVSLAFTRFIRRN----NLP-KITLHGLRHTFATVASAQGAPLFDIGKALGHS 348

Query: 291 RLSTT-QIYTNVNSKN 305
             +TT +IYT++  +N
Sbjct: 349 TPATTGRIYTHLLDQN 364


>gi|327489701|gb|EGF21492.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK1058]
          Length = 356

 Score = 40.0 bits (92), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 102/276 (36%), Gaps = 41/276 (14%)

Query: 68  YTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL- 125
           Y   R  ++   TQ  +   ++ R+LS + S  KYL +     +      RN+ K  +  
Sbjct: 85  YLRERPLLNANTTQNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATK 144

Query: 126 -------PRALNEKQALTLVDNVLLHTSHETKWID-------------------ARNSAI 159
                   RA N KQ L L D     T    ++ID                    R+ AI
Sbjct: 145 KKKETLAARAENIKQKLFLGD----ETEGFLQYIDREYPKKLSNRALSSFNKNKERDLAI 200

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP- 218
           + LL   G+R+SEA++L  ++I      + +  KG K   V +       + EY  +   
Sbjct: 201 IALLLASGVRLSEAVNLDLKDINLKMMVIEVTRKGGKRDSVNVAAFAMSYLEEYLSIRSK 260

Query: 219 -FDLNLNIQLPLFRGIRGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
            +              RG P  ++    ++ + +        +  T H LRH+ AT L  
Sbjct: 261 RYKAEKTDTAFFLTEYRGNPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYD 318

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGD 308
                  +   LGH     T +YT++     KN  D
Sbjct: 319 ATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354


>gi|308177820|ref|YP_003917226.1| phage integrase [Arthrobacter arilaitensis Re117]
 gi|307745283|emb|CBT76255.1| putative phage integrase [Arthrobacter arilaitensis Re117]
          Length = 371

 Score = 40.0 bits (92), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 28/152 (18%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR--IVPLL--PSVRKAILEYY 214
           ++ L    GLR+SE  +L  Q++             D +R  I P++  P V     E  
Sbjct: 198 VILLGAFAGLRVSEIAALRVQDV-------------DALRGYISPVIQYPGVPLKTEESK 244

Query: 215 DLCPFDLNLNIQL---PLFRGIR-------GKPLNPGVFQRYIRQLRRYL-GLPLSTTAH 263
           +  P    L  +L   P   G         G+   P   +   R  R  + GLP +   H
Sbjct: 245 NHIPIPRELAFELNKNPAKWGSETFVTLENGRAAAPYTIEARFRTARATVEGLPENFRIH 304

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            LRH FA+ L+++G D++ +Q+ + H    TT
Sbjct: 305 DLRHFFASFLIASGEDVKKVQAAMRHASAKTT 336


>gi|260590814|ref|ZP_05856272.1| integrase [Prevotella veroralis F0319]
 gi|260537300|gb|EEX19917.1| integrase [Prevotella veroralis F0319]
          Length = 276

 Score = 40.0 bits (92), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 3/52 (5%)

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYT 299
           QLR  + +PL  TAH  RH+FAT + L NG  + ++  +LGH ++ TT+ Y 
Sbjct: 219 QLRAGIAIPL--TAHIGRHTFATLITLENGVPIETVSKMLGHSKIETTERYA 268


>gi|167465306|ref|ZP_02330395.1| DNA integration/recombination/invertion protein [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 411

 Score = 40.0 bits (92), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPS 320
           H LRHS AT L+  G  +++IQ  LGH +  TT  IY +V  K   D   E +D+  P+
Sbjct: 344 HDLRHSSATLLIEAGAPMKAIQKRLGHSKHQTTADIYAHVTKKVSRD-TAEKFDKFAPN 401


>gi|78045423|ref|YP_361673.1| putative cointegrate resolution protein S [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|78033927|emb|CAJ19926.1| putative cointegrate resolution protein S [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
          Length = 281

 Score = 40.0 bits (92), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 228 PLFR------GIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGD 279
           PLFR      GI   PL+P    R +R++ R  GL  P   + H+LR  FA    +NG D
Sbjct: 175 PLFRAVNQWGGIAAAPLHPNSLVRLLRRIFREAGLSSPNDYSGHSLRRGFAGWANANGWD 234

Query: 280 LRSIQSILG 288
           ++++   +G
Sbjct: 235 VKALMEYVG 243


>gi|330465462|ref|YP_004403205.1| integrase family protein [Verrucosispora maris AB-18-032]
 gi|328808433|gb|AEB42605.1| integrase family protein [Verrucosispora maris AB-18-032]
          Length = 487

 Score = 40.0 bits (92), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 235 GKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           G+P +P GV QR+ R+L R  GLP     H LRHS AT  L  G D++ +   LGH
Sbjct: 397 GRPWHPIGVSQRF-RRLIRKAGLP-PIRLHDLRHSAATLALDAGVDIKVVSEQLGH 450


>gi|296100765|ref|YP_003610911.1| putative integrase [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295055224|gb|ADF59962.1| putative integrase [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 398

 Score = 40.0 bits (92), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 91/220 (41%), Gaps = 33/220 (15%)

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           IK+   +  ++ +T+      ++ L+++N+  R   E +    +  + L   ++T  + A
Sbjct: 178 IKAVFTWAGRQSMTSVHPARVVQLLRENNARQRYFTEDE----IRRIFLSADNDTSPVAA 233

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R   +L L    GLR  E      +++             D ++    LP  +       
Sbjct: 234 RYVKLLLL---TGLRRDELRLAKWEHV-------------DPVKRTLWLPETKNGYGRIV 277

Query: 215 DLCPFDLNLNIQLPLFRG--------IRGKPL-NP-GVFQRYIRQLRRYLGLPLSTTAHT 264
            L    +++   LP  RG         +G PL NP   FQR +R   R          HT
Sbjct: 278 HLNSLAMDVIRTLPTQRGNPWLFIGKKQGMPLSNPVKAFQRIVR---RAGIFDKEVCIHT 334

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            RHS A  ++S GG L  +Q+ LGH    ++Q Y +++ +
Sbjct: 335 CRHSVAALIVSYGGTLYDVQAQLGHRSSQSSQRYAHLHPQ 374


>gi|239631947|ref|ZP_04674978.1| integrase [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239526412|gb|EEQ65413.1| integrase [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 390

 Score = 40.0 bits (92), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 99/240 (41%), Gaps = 31/240 (12%)

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           KR+   +++  +Y+K    +   ++L  RN   + S+P +  +  AL  +         +
Sbjct: 136 KRARGTVRNLHQYVKAMAASAMDDLLISRNFANNISIPGSKGKDTALKYLQASDYKKLKK 195

Query: 149 TKWIDARNSAILYLLYGCGL----RISEALSLTPQNIMDDQSTLRI-------QGKGDKI 197
             +  A  + +   +   G+    R +E + LT  +I  +  T+RI        G G K 
Sbjct: 196 YCYSHADMTHMYNYVIAAGVDTGARFAEVIGLTWPDIDFENKTIRITKTWDWLSGGGFKA 255

Query: 198 RIVPLLPSVRKAILEYYD------------LCPFDLNLNIQLP---LFRGIRGKPLNPGV 242
              P   SVR   +E  D               + +    + P   +F   R   L  G 
Sbjct: 256 TKTP--SSVR--TIEVTDDLLQLLRQLHRQQNEYFMRHGFRDPDQLVFMSYRHSVLRDGT 311

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
               +R+L   LG+    T H LRH+  ++LLS G D+  I   LGH  ++ T ++Y+++
Sbjct: 312 INADLRRLLPSLGISPVITFHGLRHTHVSYLLSQGVDINYISHRLGHADVTITLRVYSHL 371


>gi|212695524|ref|ZP_03303652.1| hypothetical protein ANHYDRO_00041 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677402|gb|EEB37009.1| hypothetical protein ANHYDRO_00041 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 411

 Score = 40.0 bits (92), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 85/219 (38%), Gaps = 53/219 (24%)

Query: 131 EKQALTLVDNVLL-----HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           +K+A+T+ + VL      ++    KW       I  ++   G+R+ E   L   ++  D 
Sbjct: 178 KKKAMTIEEQVLFEEYLSNSDEYKKWY-----PIFIVMLWTGMRVGEVTGLQWDDLDFDN 232

Query: 186 STLRI--------QGKG-------------DKIRIVPLLPSVRKAILEYYDLCP-FDLNL 223
             + +        +GKG                R +P++  V+ A L   +L   F +  
Sbjct: 233 GLINVNRTLVYYSKGKGLNNRYAINTPKTASGKRSIPMVQKVKDAFLMERELQKTFGIEC 292

Query: 224 NIQLPLFRGIR-----GKPLNPGVFQRYIRQLRRYLGLPLST---------------TAH 263
              +  F+        GK  N G   + +R++ R   L +                 + H
Sbjct: 293 CDSIDGFKDFVFLNRFGKVHNNGTLNKALRRIVRDCNLSIMDKNKSSSNDILLVPHLSNH 352

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
             RH+F T L     + +++QSILGH  +STT  IY + 
Sbjct: 353 IFRHTFTTRLNEQNINTKAMQSILGHSDISTTMDIYVDA 391


>gi|84060800|ref|YP_444002.1| phage integrase [Escherichia coli]
 gi|83743382|gb|ABC42260.1| phage integrase [Escherichia coli]
          Length = 304

 Score = 40.0 bits (92), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 10/141 (7%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK---IRIVPLLPSVRKA 209
           D R   +L L Y CGLR  E  ++   +I   Q  L ++ +  K    R+VP  P   + 
Sbjct: 149 DIRTRFMLALAYDCGLRREELCTVATGDIDPSQRLLTVRAEHTKNRFGRVVPYSPVTGEL 208

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGI----RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              +  L    +  + + PLF       R +P++   + + +R L     LPL +T HT 
Sbjct: 209 YTAW--LTERRMLSSSRGPLFLSRSPRNRAEPISNWTWSKVVRGLAIKADLPLIST-HTF 265

Query: 266 RHSFATHLLSNGGDLRSIQSI 286
           RH   T L   G D+  I  I
Sbjct: 266 RHLCLTELARVGWDIHEICCI 286


>gi|82702826|ref|YP_412392.1| Phage integrase [Nitrosospira multiformis ATCC 25196]
 gi|82410891|gb|ABB75000.1| Phage integrase [Nitrosospira multiformis ATCC 25196]
          Length = 660

 Score = 40.0 bits (92), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 18/158 (11%)

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF--DLNL 223
            GL I+EA SL    I +  + + ++G+    R VPL   + K++L++    P     + 
Sbjct: 516 SGLDINEAASLKANQINERANVINLEGRTP--RAVPLSNPL-KSLLQHSGNRPVWDPDDS 572

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             ++ L   +    ++ G            L  P   TA T+RHS+ T+L+  G  L  +
Sbjct: 573 QTRVDLATALVCAAIDSG------------LPDPQEITAETIRHSYITYLVRQGLRLSEL 620

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           + I+GH   S    Y   +    G  + EI +  HP++
Sbjct: 621 EQIVGHLDPSVISSYGTYSPPQQGRPLHEI-EVLHPAL 657


>gi|313158322|gb|EFR57724.1| phage integrase, N-terminal SAM domain protein [Alistipes sp. HGB5]
          Length = 268

 Score = 40.0 bits (92), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 16/145 (11%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           ++  L   G R+SE + +  +++        I  KG KIR + +  S+RK   E+ +   
Sbjct: 117 VVRFLAATGARVSELIQMKVEHV--QIGYFDIYTKGGKIRRIYIPKSLRKEATEWLNSTN 174

Query: 219 FDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRY---LGLPLSTT-AHTLRHSFATHL 273
                     LF    G+ +   G+ Q    QL+ Y    GL       H+ RH FA + 
Sbjct: 175 -----RTSGYLFLNRFGERITTRGIAQ----QLKNYATKYGLNEKVVYPHSFRHRFAKNF 225

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIY 298
           L    D+  +  ++GH  + TT+IY
Sbjct: 226 LEKFNDISLLADLMGHESIETTRIY 250


>gi|265763498|ref|ZP_06092066.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263256106|gb|EEZ27452.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 195

 Score = 40.0 bits (92), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 14/166 (8%)

Query: 142 LLHTSHETKW-IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           LLH   +  W + AR      L +   LR+S+ LSL   +I+   S  +I+ K  K+R +
Sbjct: 24  LLHKDRQYLWELYAR------LAFCTALRVSDVLSLAWADILHKGSLTKIEKKTGKVRKI 77

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P   S++  I E Y L     N N +L       G  ++     R +++ +    L +  
Sbjct: 78  PFNLSIQTRIEELYILLKRP-NPN-ELIFKSKFTGVSISSQYLNRIMKEWKAKYKLDIEN 135

Query: 261 -TAHTLRHSFATHLLSNGGD----LRSIQSILGHFRLSTTQIYTNV 301
            + HT R +F  ++     +    L  +  I  H  +  T+IY  +
Sbjct: 136 FSTHTFRKTFGRYVYDTSENKSEALLLLNRIFNHSNIEITKIYICI 181


>gi|239906151|ref|YP_002952890.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239796015|dbj|BAH75004.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 347

 Score = 40.0 bits (92), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G+P+      R +R   R  G+      + +RH FAT LL+ GGDL ++  ++GH  +  
Sbjct: 266 GRPVKQ--ISRAMRTACRRAGITYPVVLYDVRHLFATTLLNEGGDLSAVSKLMGHSSIQM 323

Query: 295 T 295
           T
Sbjct: 324 T 324


>gi|225021491|ref|ZP_03710683.1| hypothetical protein CORMATOL_01511 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945873|gb|EEG27082.1| hypothetical protein CORMATOL_01511 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 382

 Score = 40.0 bits (92), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +F    G+P N        + L + +G+  +TT H LRH +A+ L+ +G  +  +Q +LG
Sbjct: 279 IFAAKSGEPYNSLAIGTQFKNLTKRVGV--TTTFHALRHYYASKLIESGVSVSVVQRVLG 336

Query: 289 HFRLSTT 295
           H   +TT
Sbjct: 337 HSSPATT 343


>gi|254454844|ref|ZP_05068281.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198269250|gb|EDY93520.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 395

 Score = 40.0 bits (92), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 13/142 (9%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           L +L GC  R+ E  +L    I D    L     G   R +PL PS  +A+L    L   
Sbjct: 233 LLILTGC--RLGEIQTLQWGFITDQGMELPDTKTG--ARRIPL-PSAARAVLS--TLARV 285

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
           D N  +   +   + GK  +   FQ   R++R   GL      H LRH++A++ +S+G  
Sbjct: 286 DGNPYV---IVGKVAGK--HATDFQHPWRRIRERAGL-TGVRIHDLRHTYASNAVSSGMP 339

Query: 280 LRSIQSILGHFRLSTTQIYTNV 301
           ++ +  +LGH ++ TT  Y ++
Sbjct: 340 IQMVGRLLGHTQIQTTMRYAHL 361


>gi|89892756|ref|YP_516243.1| hypothetical protein DSY0010 [Desulfitobacterium hafniense Y51]
 gi|89332204|dbj|BAE81799.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 395

 Score = 40.0 bits (92), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 67/176 (38%), Gaps = 53/176 (30%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGK-------------GDKI-------RIVPLLPSV 206
           GLR SE L L    I  +Q T+ I+ K             G+ +       R +PLLPSV
Sbjct: 203 GLRRSEVLGLKWDAINLEQKTISIKHKVIEDTVDGKSIAVGEDVLKTKSSFRTLPLLPSV 262

Query: 207 RKAIL-------------------EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
            K +L                   +Y D    D              GK + P     + 
Sbjct: 263 EKLLLAEKEKQEMYRKLFKRSYCRDYLDYICLDQA------------GKLMRPNYVTEHF 310

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN 302
                   L      H LRHS A+ LL+NG  ++ IQ  LGH   STT  IY++++
Sbjct: 311 SWALEKADLK-KIRFHDLRHSCASLLLANGISMKQIQIWLGHSTFSTTADIYSHLD 365


>gi|257880148|ref|ZP_05659801.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|294618944|ref|ZP_06698446.1| integrase [Enterococcus faecium E1679]
 gi|257814376|gb|EEV43134.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|291594805|gb|EFF26180.1| integrase [Enterococcus faecium E1679]
          Length = 258

 Score = 40.0 bits (92), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 18/173 (10%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-------------KIRIV 200
           +R S I   L+  GLR  E +SLT  +   D + + + G  D               R +
Sbjct: 83  SRYSLITKFLFLTGLRYGELISLTESDY--DGNKITVSGTYDYELKIKTTTKNTGSYRTI 140

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
            L  + ++ I +  +      N N    +F    G P++   + + +R + + L +    
Sbjct: 141 ELSSNAKEIIDQLIEENKLIKN-NKDKYIFISKNGNPISIQAYNQSLRAVSKELNIDKKV 199

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMME 312
           ++H LRHS  + L   G  L++I   +GH    TT +IYT+  +KN  + ++E
Sbjct: 200 SSHMLRHSHISLLTELGIPLKAIMDRVGHEDSKTTLKIYTHT-TKNMQNQLVE 251


>gi|160882465|ref|ZP_02063468.1| hypothetical protein BACOVA_00416 [Bacteroides ovatus ATCC 8483]
 gi|299146300|ref|ZP_07039368.1| integrase [Bacteroides sp. 3_1_23]
 gi|156112177|gb|EDO13922.1| hypothetical protein BACOVA_00416 [Bacteroides ovatus ATCC 8483]
 gi|298516791|gb|EFI40672.1| integrase [Bacteroides sp. 3_1_23]
          Length = 318

 Score = 40.0 bits (92), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 9/72 (12%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY---- 298
           F   ++ L R L L    T++T RHS+AT     G  +  I   LGH  + TTQIY    
Sbjct: 236 FNNCLKDLARALRLNSPVTSYTFRHSWATTAKYRGVSIEMISESLGHKSIKTTQIYLKGF 295

Query: 299 -----TNVNSKN 305
                T VN KN
Sbjct: 296 GLRERTEVNRKN 307


>gi|73663256|ref|YP_302037.1| integrase [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|72495771|dbj|BAE19092.1| integrase [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
          Length = 349

 Score = 40.0 bits (92), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 9/149 (6%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI--RIVPLLPSVRKAILEY 213
           +S +L +    G R SE   L  +++    + + ++G   +   RI+ +     K I  +
Sbjct: 188 SSLVLLVALTTGGRFSEIAKLKREDLDIKNNKIHLRGTKTETSDRIISIDTVTMKRIQSF 247

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            D  P     NI   +F  + GK +      + +R+    L +    T H+LRHSF + L
Sbjct: 248 IDSRP----TNISGYIF-TVDGKTITNAAVNKVLRKACANLNIK-EITIHSLRHSFCSIL 301

Query: 274 LSNGGDLRSIQSILGHFRLSTTQ-IYTNV 301
           + +G  +  I   LGH   +TTQ IY+++
Sbjct: 302 IHHGFSILYISKHLGHSNPATTQSIYSHL 330


>gi|325568568|ref|ZP_08144861.1| bacteriophage integrase [Enterococcus casseliflavus ATCC 12755]
 gi|325157606|gb|EGC69762.1| bacteriophage integrase [Enterococcus casseliflavus ATCC 12755]
          Length = 408

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
           +NP   Q ++  L R        T H  RH+ A+ L   G  ++ +Q+ LGH  + TT  
Sbjct: 310 MNPRTPQTWLDTLYRKNKSLHQITPHGFRHTHASLLFEAGASMKQVQARLGHSNIKTTMN 369

Query: 297 IYTNVNSKNGGDWMMEIYDQ 316
           +YT+V +K G +   +I+ +
Sbjct: 370 VYTHV-TKEGKEETADIFGE 388


>gi|317477513|ref|ZP_07936738.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906314|gb|EFV28043.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 382

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 17/179 (9%)

Query: 133 QALTLVDNVLLHTSHETKWIDAR-----NSAILYLLYGCG-LRISEALSLTPQNIMDDQS 186
           Q   +    +L  + E  +I  R     +  I    Y CG +  ++  +LT  NI + + 
Sbjct: 191 QKRAIAKTEVLKFTKEVDYIGKRQYVQLSKDIFIFSYLCGGINFTDIANLTKANITNGRI 250

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYD------LCPFDLNLNI-QLPLFRGIRGKPLN 239
               Q  G  I++     +++  I++ Y+      L P  LN NI + PL +  R   + 
Sbjct: 251 HYIRQKTGKLIKLGISEEAMQ--IIKKYESESKGYLFPI-LNANIHKTPLQKQNRIHKM- 306

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            G   + ++ +   L +  + T +  RHSFA+ L  +G  +  I   LGH  LSTTQ+Y
Sbjct: 307 LGNVNKNLKLIAAQLNVDANMTTYVARHSFASVLKKSGVSIALISEALGHSDLSTTQVY 365


>gi|260912331|ref|ZP_05918880.1| tyrosine recombinase xerC [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260633512|gb|EEX51653.1| tyrosine recombinase xerC [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 58

 Score = 40.0 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 25/39 (64%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H  RH+FAT  ++ G D+ +   +LGH  + TT+IY +V
Sbjct: 3   HCTRHTFATLTITAGADIFTTSKLLGHTNVHTTEIYADV 41


>gi|255011845|ref|ZP_05283971.1| putative integrase [Bacteroides fragilis 3_1_12]
          Length = 433

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 88/193 (45%), Gaps = 25/193 (12%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K   ++ RAL+++Q L L  + L       + + +R +  L+  Y  G+   + + L  +
Sbjct: 232 KPCKTVKRALDKEQMLRLTQSDL---GANPELMQSR-ALFLFGFYAQGMAFVDIIFLRWK 287

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           NI  +  + R       I+I  + P + +AIL+ Y +   +++  I  P+ + +    +N
Sbjct: 288 NICGNSISYRRHKSKQTIQIT-ITPQI-QAILDEYGINKENVDGYI-FPIIQPV----IN 340

Query: 240 P--------------GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
           P              G   R+++ +   LG+  S T +T RH++AT     G  + +I +
Sbjct: 341 PQTDKNEYEQYRVALGRTNRHLKTISGKLGIAPSLTTYTARHTWATLAREYGAPVATIST 400

Query: 286 ILGHFRLSTTQIY 298
            LGH +   T +Y
Sbjct: 401 GLGHTKEEMTLVY 413


>gi|253316877|ref|ZP_04840090.1| integrase [Staphylococcus aureus subsp. aureus str. CF-Marseille]
          Length = 349

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 18/168 (10%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           L++  GLRI EA++L   +    +  + I    D I    + P  +    E  D+ P   
Sbjct: 187 LMFYTGLRIGEAMALVWTDYNKYKKEISINKTMD-ISNRTIYPRPKTDSSE--DIVPLPK 243

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQR------------YIRQLRRYLGLPLSTTAHTLRHSF 269
            +N  L   R  R K LN    +R            Y    +++         H LRHS+
Sbjct: 244 FINTMLTE-RHQREKELNKYFDERSYFIFGGMAPKHYSHVQKKFQKAFPPYNIHALRHSY 302

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQ 316
           A++L +NG D+  +QS++ H +++ T   Y+++ ++   D  + I+D+
Sbjct: 303 ASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKKHD-AIAIFDK 349


>gi|226325781|ref|ZP_03801299.1| hypothetical protein COPCOM_03594 [Coprococcus comes ATCC 27758]
 gi|225205905|gb|EEG88259.1| hypothetical protein COPCOM_03594 [Coprococcus comes ATCC 27758]
          Length = 124

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 1/41 (2%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN 302
           H LRH++ ++LLSNG   + +Q +LGH  +STT  IY +  
Sbjct: 66  HMLRHTYTSNLLSNGAAPKDVQELLGHTDVSTTMNIYAHAT 106


>gi|302188076|ref|ZP_07264749.1| cointegrase [Pseudomonas syringae pv. syringae 642]
          Length = 336

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 14/106 (13%)

Query: 216 LCPFDLNLN-------IQLPLFR------GIRGKPLNPGVFQRYIRQLRRYLGLPLS-TT 261
           LCP +  +N        + P+FR       +  K + P      +R++ +  GLP    +
Sbjct: 197 LCPVEAYINWITVAGLAKGPVFRRLDRWGNLADKAIQPHSLIPMLRRIFKEAGLPEELYS 256

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           AH++R  FAT   +NG D++ + S +G   + +   Y +     GG
Sbjct: 257 AHSMRRGFATWASANGWDIKGLMSYVGWKDMKSALRYVDAGISFGG 302


>gi|284048465|ref|YP_003398804.1| integrase family protein [Acidaminococcus fermentans DSM 20731]
 gi|283952686|gb|ADB47489.1| integrase family protein [Acidaminococcus fermentans DSM 20731]
          Length = 430

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 95/206 (46%), Gaps = 32/206 (15%)

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           ++S+ R    K+ + +  + + + SH  ++ +      +++L+  GLR+SE   LT  +I
Sbjct: 187 NDSVRREALSKRDMRIFLDFIKNDSHYKRYYEG-----IFILFHTGLRVSEFCGLTVNDI 241

Query: 182 MDDQSTLRI-----QGKGD----------KIRIVPLLPSVRK---AILEYYDLCPFDLNL 223
             ++ T+ +     +G G             R++P+   V +   AILE       +  +
Sbjct: 242 DLEKRTINVDKQLQKGNGKYYILSTKTKAGARLLPMTDEVYQCFAAILERRRPPKVEPII 301

Query: 224 N-IQLPLFRGIRGKPLNPGVFQRYIRQLRRY------LGLPLSTTAHTLRHSFATHLLSN 276
           + +   LF  + G P     ++ Y + + R         LP   T H  RH++ T++  +
Sbjct: 302 DGVGKFLFYDVNGHPTVALHWEHYFKLIVRKHNSIYKYQLP-RITPHVCRHTYCTNMALS 360

Query: 277 GGDLRSIQSILGHFRLSTT-QIYTNV 301
           G   +++Q ++GH  +S T  +YT++
Sbjct: 361 GVSAKTLQYLMGHSDISITLNVYTHI 386


>gi|256833339|ref|YP_003162066.1| integrase family protein [Jonesia denitrificans DSM 20603]
 gi|256686870|gb|ACV09763.1| integrase family protein [Jonesia denitrificans DSM 20603]
          Length = 395

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 11/112 (9%)

Query: 198 RIVPLLPSVRKAILEYYDL---CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           RI+P++P ++ A+L + +     P+DL       ++    G+PL         R L    
Sbjct: 277 RIIPMVPWMKAALLAWREAQGGSPYDL-------VWCRADGRPLTDKQDVAAWRTLCETA 329

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           G+P +   +  RH+ AT L   G D  +I +I+GH  + +T+ Y + +++  
Sbjct: 330 GVP-AYDLYEARHTAATLLRKAGVDDETIIAIMGHATILSTKAYLHSDTERA 380


>gi|219667225|ref|YP_002457660.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
 gi|219537485|gb|ACL19224.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
          Length = 187

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 11/153 (7%)

Query: 159 ILYLLYG--CGLRISEALSLTPQNIMDD---QSTLRIQ-GKGDKIRIVPLLPSVRKAILE 212
           +L  ++G   GLRIS+ L+L   ++ +D   +  L IQ GK  + +   +   +++ +L+
Sbjct: 28  LLLFVFGINTGLRISDLLALKLSDVWEDGRIKEFLLIQDGKSGEEKAYYINNRIQEELLK 87

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           Y  L      LN    LF+  +   P+      R I    R +G+P     HTLR +F  
Sbjct: 88  YLALA----RLNGSDYLFKSKKDNLPITRQQAYRIINHAARQVGIPGKIGTHTLRKTFGY 143

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           H    G  +  +     H   S T  Y  +N +
Sbjct: 144 HAFRAGVAVSILMKAFHHHSPSETLKYIGINKE 176


>gi|325168599|ref|YP_004280389.1| phage integrase [Agrobacterium sp. H13-3]
 gi|325064322|gb|ADY68011.1| phage integrase [Agrobacterium sp. H13-3]
          Length = 469

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 28/94 (29%)

Query: 235 GKPLNPGVFQ-RYIRQLRRYL--GLPLSTTAHTLRHSFATHLLSN--------------- 276
           G+P+ P  ++  + R  +R    G P+  + H LRH+FA H+L+                
Sbjct: 350 GQPVRPNSWEVAFARACQRCQANGFPIDISPHQLRHTFAVHMLAMLIQRQLGRRSLESSA 409

Query: 277 ----------GGDLRSIQSILGHFRLSTTQIYTN 300
                     G  L+ +Q +LGH  L TT IY +
Sbjct: 410 GPAEGYRRILGDPLQQVQRLLGHASLETTSIYLD 443


>gi|300214847|gb|ADJ79263.1| Phage integrase [Lactobacillus salivarius CECT 5713]
          Length = 167

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 4/57 (7%)

Query: 247 IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           I Q+ +  G+ P++T  H  RH+ AT L ++G D++ +Q+ LGH  + TT  IYT+ 
Sbjct: 95  IHQIAKKTGIHPITT--HGFRHTHATLLFASGMDIKQVQARLGHSNVQTTLNIYTHA 149


>gi|332884385|gb|EGK04649.1| hypothetical protein HMPREF9456_03402 [Dysgonomonas mossii DSM
           22836]
          Length = 417

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 6/154 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213
           R+  +  L    GLR S+ + L   +I  +++ ++I Q K  K   +PL+ SV  AI++Y
Sbjct: 237 RDYIVFLLAAEYGLRASDIVQLRMTDIDWERNEIKIIQCKTKKPLTLPLIASVGNAIIDY 296

Query: 214 Y-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT----AHTLRHS 268
             +  P +    I +      +GK ++       +    R      + T     H+LRHS
Sbjct: 297 MRNGHPSEGGNLIIVQHGNTRKGKIVHSCALHAIVSNAIRAGNGQTAATHKHGPHSLRHS 356

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            A+++L  G  L  I   LGH    +TQ Y  ++
Sbjct: 357 LASNMLKMGVSLNVISGSLGHSITQSTQTYLKID 390


>gi|312792344|ref|YP_004025267.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312179484|gb|ADQ39654.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 398

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 112/292 (38%), Gaps = 58/292 (19%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKR------------------SLSGIKSFLKYL 102
           QT+R  ++ +  + I+      IG   LK                   SLS IK     L
Sbjct: 88  QTLRPSTFQDYESLINNHIVPAIGHYKLKDLRPEHLQALYNSKYGNGLSLSTIKHIHVIL 147

Query: 103 KKRKITTESNILNMRNLKKSNSLPRAL--NEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
                    N L +RN+ ++ +LP+    NE + LTL +      + E +    R     
Sbjct: 148 HSALDQALKNGLVVRNVSEATTLPKTKTKNEIRVLTLQEQQRFIAALEGE----RLRPAF 203

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------------------------GKGDK 196
            L    G+R+ E L+L    +   + T+ I+                             
Sbjct: 204 LLALASGVRLGELLALKWDCVNLKEGTITIKRSLRRIKTYDKNLPTKTMLAFQEPKTAAG 263

Query: 197 IRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           IR +P+ P + + + E+        L    L  +  L +F    G P+ P  F R   ++
Sbjct: 264 IRTIPVPPVILEELKEHRKRQLEERLQAGSLYEDNNL-VFATELGTPIEPRNFLRVFYRI 322

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
                L ++   H LRH++AT LL      + +Q +LGH  +STT  IY++V
Sbjct: 323 IEKANLDINF--HALRHTYATRLLEANEHPKVVQELLGHNDISTTLNIYSHV 372


>gi|306821806|ref|ZP_07455401.1| transposase [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304550173|gb|EFM38169.1| transposase [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 325

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 26/149 (17%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRI----QGKGDK------------IRIVPLL 203
           L +L G GLRISE   LT ++I  +  T+ I    Q  G K            IR +P+ 
Sbjct: 178 LIILLGTGLRISEFCGLTDRDIGFENRTINIDHQLQYSGKKSYRIETPKTDNGIRKIPMS 237

Query: 204 PSVRKA---ILEYYDLCPFDLNLNIQLPLFRGIRGKP--LNPGV--FQRYIRQLRRYLG- 255
             V +A   +L+      F ++      LF    G P   N  V  F R + +  +  G 
Sbjct: 238 DRVLEALQRVLQNRKNSNFTVDGYTGF-LFLTSNGTPKVCNGYVIMFSRLVEKYNQNHGE 296

Query: 256 -LPLSTTAHTLRHSFATHLLSNGGDLRSI 283
            LP+ TT HTLRH+F T++ + G + +++
Sbjct: 297 ALPVVTTPHTLRHTFCTNMANAGMNPKAL 325


>gi|149916283|ref|ZP_01904803.1| phage integrase [Roseobacter sp. AzwK-3b]
 gi|149809737|gb|EDM69589.1| phage integrase [Roseobacter sp. AzwK-3b]
          Length = 59

 Score = 40.0 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 29/42 (69%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           H LRHS+A+ L++ G  +  +Q +LGH  ++TTQ Y ++ S+
Sbjct: 2   HDLRHSYASTLINAGVSIYEVQKLLGHTNITTTQRYAHLASE 43


>gi|237722267|ref|ZP_04552748.1| integrase [Bacteroides sp. 2_2_4]
 gi|293373519|ref|ZP_06619871.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|229448077|gb|EEO53868.1| integrase [Bacteroides sp. 2_2_4]
 gi|292631483|gb|EFF50109.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 317

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 9/72 (12%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY---- 298
           F   ++ L R L L    T++T RHS+AT     G  +  I   LGH  + TTQIY    
Sbjct: 235 FNNCLKDLARALRLNSPVTSYTFRHSWATTAKYRGVSIEMISESLGHKSIKTTQIYLKGF 294

Query: 299 -----TNVNSKN 305
                T VN KN
Sbjct: 295 GLRERTEVNRKN 306


>gi|154492801|ref|ZP_02032427.1| hypothetical protein PARMER_02440 [Parabacteroides merdae ATCC
           43184]
 gi|154087106|gb|EDN86151.1| hypothetical protein PARMER_02440 [Parabacteroides merdae ATCC
           43184]
          Length = 409

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           QLR  + +PLS  AH  RH+FAT + L  G  + ++  +LGH  + TT+ Y +V  K 
Sbjct: 335 QLRAGISIPLS--AHVGRHTFATLITLERGVPIETVSRMLGHSNIQTTERYAHVTPKK 390


>gi|139439389|ref|ZP_01772830.1| Hypothetical protein COLAER_01849 [Collinsella aerofaciens ATCC
           25986]
 gi|133775168|gb|EBA38988.1| Hypothetical protein COLAER_01849 [Collinsella aerofaciens ATCC
           25986]
          Length = 368

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 5/59 (8%)

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKN 305
           R+ RRY+G       H LRH+ AT L+ NG D RS Q  LGH   S T  +Y ++   N
Sbjct: 178 RKRRRYVGYDF----HELRHTQATFLIGNGIDPRSAQGRLGHEVSSMTMDVYAHMMGGN 232


>gi|899056|gb|AAA87238.1| lambda integrase family of site specific recombinase; ORF2 [Plasmid
           pAE1]
          Length = 415

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 128/323 (39%), Gaps = 74/323 (22%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFL--------IFLAFYTEEKITIQTIR 64
           E+ +  + +L +L  +RGL+K +L  Y    R FL          LA    +     TIR
Sbjct: 109 EIARIYRRYLDHLRQDRGLAKNSLLVYGPFIRDFLDSHSANDGTILA----DAFCAVTIR 164

Query: 65  Q--LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES---NILNMRNL 119
              L+Y+E R   S   T+ +           ++SF  +L  R  T      ++ ++R  
Sbjct: 165 DHFLTYSEGR---SAEYTRLMA--------VALRSFCHFLFLRGDTARDLYESVPSVRKW 213

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           ++S ++P  L  +Q        L+ ++  +     R+ AIL LL   GLR  E +++   
Sbjct: 214 RQS-TVPTFLTPEQ-----QEALIASADRSTPTGRRDYAILLLLARLGLRAGEIVAMQLD 267

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           +I      L + GKG  +  VPL   V  AI  Y                 R  RG   +
Sbjct: 268 DIHWRSGELVVHGKGQMVEHVPLPSEVGAAIATY----------------LRDGRGASAS 311

Query: 240 PGVFQRYIRQLRRYLGL--PLST-------------------TAHTLRHSFATHLLSNGG 278
             VF   +R+L   +GL  P +                    +AH  RH  AT ++ +G 
Sbjct: 312 RHVF---LRRLAPRVGLAGPAAIGKIVCQAFARAGFRPACRGSAHLFRHGLATTMIRHGA 368

Query: 279 DLRSIQSILGHFRLSTTQIYTNV 301
            +  I  +L H    +T IY  V
Sbjct: 369 SIAEIAEVLRHRSPDSTAIYAKV 391


>gi|303233297|ref|ZP_07319968.1| site-specific recombinase, phage integrase family [Atopobium
           vaginae PB189-T1-4]
 gi|302480597|gb|EFL43686.1| site-specific recombinase, phage integrase family [Atopobium
           vaginae PB189-T1-4]
          Length = 309

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 21/146 (14%)

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQ------GKGDK---------IRIVPLLPSVRKA 209
           G GLR+ E   L   ++  D   + ++       KG K         +R VP+ P +   
Sbjct: 151 GFGLRMDEMFGLDWSDVDFDARLIHVKRAYVKAEKGYKLDTPKTKMSVRAVPMRPFIYDE 210

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +   Y+        ++   +   + G+  NP       R   +  GL      + +RHSF
Sbjct: 211 LQALYNA-----RYSLDNSVCSNVHGRRANPAKTASRWRAYTKKHGLQQLHIGN-MRHSF 264

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTT 295
           AT  L+ G D+  +  +LGH  ++TT
Sbjct: 265 ATSCLNAGVDVTKVSKLLGHSNITTT 290


>gi|302534721|ref|ZP_07287063.1| phage integrase [Streptomyces sp. C]
 gi|302443616|gb|EFL15432.1| phage integrase [Streptomyces sp. C]
          Length = 422

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G PL+P    R  R      GL      H LRHS AT LL  G DL  I+ +LGH  +  
Sbjct: 324 GGPLDPANLTRRFRSFLDRAGL-RRIRFHDLRHSTATLLLEQGVDLVVIKELLGHAHIGV 382

Query: 295 TQ-IYTNV 301
           T  +Y +V
Sbjct: 383 TAGVYAHV 390


>gi|291527876|emb|CBK93462.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 458

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 24/33 (72%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           H LRH++ ++LLSNG   + +Q +LGH  +STT
Sbjct: 400 HQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTT 432


>gi|237742003|ref|ZP_04572484.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           4_1_13]
 gi|229429651|gb|EEO39863.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           4_1_13]
          Length = 290

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 108/264 (40%), Gaps = 20/264 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++++  LE E      T+ S   D   FL +L      K  I T+ +L    I+ ++++ 
Sbjct: 12  KDFIYYLEFEENKKNNTVISIRKDLNNFLEYLN-----KKNIITLDKLDELIIKEYLTEL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +   + + +  R LS IK F KYL    +  +   + +   K      + LN  +     
Sbjct: 67  KDFDLSNSTYNRRLSSIKKFYKYLINNNLKEKGKEILIEGKKSDEKKIQYLNSDEI---- 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKI 197
             +L     E  +   R+  +  LLY  G+ ++E LSL   N  ++ +    ++ K    
Sbjct: 123 -KILREEMKEESFNVLRDRLMFELLYSSGMTVAELLSLGELNFNLEKREIYLLKNKIS-- 179

Query: 198 RIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           R +    + ++  L++     +    + N NI   +F       L     +R I +    
Sbjct: 180 RTLYFSQTCKEVYLKFLIAKKEKFKEENNTNI---IFVNNSNMRLTDRSVRRLINKYSEK 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNG 277
             L    + +TLRHSF  ++L NG
Sbjct: 237 ANLQKEVSPYTLRHSFCIYMLKNG 260


>gi|224475956|ref|YP_002633562.1| phage integrase [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222420563|emb|CAL27377.1| phage integrase [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 349

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 84/175 (48%), Gaps = 32/175 (18%)

Query: 162 LLYGCGLRISEALSLT-------PQNIMDDQS------TLRIQGKGDKIR-IVPLLPSVR 207
           L++  GLRI EA++L         + I  D++      T+  + K D    IVPL   + 
Sbjct: 187 LMFYTGLRIGEAMALVWTDYNKYKKEISIDKTMDISNRTIYPRPKTDSSEDIVPLPNFIN 246

Query: 208 KAILEYYDLCP-----FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           + + E Y         FD        +F GI  K  +  V +++ +   +Y         
Sbjct: 247 EMLAERYQREKAANKYFDERSYF---IFGGIAPKHYS-HVHKKFQKAFPQY-------NI 295

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQ 316
           HTLRHS+A++L +NG D+  +QS++ H +++ T   Y+++ ++   D  + I+D+
Sbjct: 296 HTLRHSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKKHD-AIAIFDE 349


>gi|15042706|gb|AAK82422.1|AF396083_1 MrfI [Photorhabdus luminescens]
          Length = 190

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 10/155 (6%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEY 213
           R+  ++ + +  G R+SE  +L   ++  +   + ++  KG      PL+P    A+ ++
Sbjct: 27  RDYCMILMCFIHGFRVSELCNLMLSDLDLNSGIIHVRRLKGGLSTTHPLVPEEIDALNQW 86

Query: 214 YDLC----PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +++       D +  + L    G   +    G+ +RY RQ      + +S   H LRH+ 
Sbjct: 87  FNIRRQWRESDTSW-VFLSQKSGAISRQQVYGLLKRYGRQAL----VNISPHPHMLRHAC 141

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              L   G D R IQ  LGH  +S T IYT  N K
Sbjct: 142 GYALADLGRDTRLIQDYLGHRNISHTVIYTASNVK 176


>gi|29348887|ref|NP_812390.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253572993|ref|ZP_04850389.1| integrase [Bacteroides sp. 1_1_6]
 gi|29340793|gb|AAO78584.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251837439|gb|EES65534.1| integrase [Bacteroides sp. 1_1_6]
          Length = 427

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 60/293 (20%), Positives = 125/293 (42%), Gaps = 43/293 (14%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG-----IKSF 98
           R+ L     Y+ + +T + +    Y E   ++  +  +  G   L  + +G     +K F
Sbjct: 149 RKHLTAFKEYSSQPVTFRNLNLTFYNEFMDYLFHKVVKPNGTVGLLTNSAGKIIRLLKGF 208

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           + Y   + I    ++ N + +++       LNEK+   + +   L  S + +  + R+  
Sbjct: 209 VNYQIVKGIIPPIDLKNFKVVEEETDAI-YLNEKELAAIYE---LDLSDDKQLEEIRDVF 264

Query: 159 ILYLLYGC--GLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY-Y 214
           I     GC  GLR S+  +L+P++I +D+++    Q K  K  ++P++  V + + +Y Y
Sbjct: 265 IT----GCFTGLRYSDLSTLSPEHIDLDNENINLKQRKVHKAVVIPMIDYVPEILKKYNY 320

Query: 215 DLCPF--------------DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           DL                  + L+ ++ + R  +GK     V++++              
Sbjct: 321 DLPKIPRYMFNERVKELGRKIKLSQKIEVVRR-KGKEREKRVYEKW-----------EMI 368

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           ++HT R SF T++  +G     +  I GH   S    Y  V+++     + E+
Sbjct: 369 SSHTCRRSFCTNMYLSGFPAAELMRISGHKSPSAFMRYIKVDNQQAAKRLKEL 421


>gi|332883197|gb|EGK03480.1| hypothetical protein HMPREF9456_01547 [Dysgonomonas mossii DSM
           22836]
          Length = 401

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           ++ + + L +P+  T +  RHSFAT L  +G ++  I   LGH     TQIY
Sbjct: 333 LKDIGKELNIPIDLTTYVARHSFATVLKRSGVNISIISESLGHSSEKVTQIY 384


>gi|302384655|ref|YP_003820477.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302195283|gb|ADL02854.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 386

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 122/298 (40%), Gaps = 35/298 (11%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           KE   WL      R         Y C     + F      E+I++QT    S       I
Sbjct: 65  KEFTAWLHGDLTGRVKPSTYESYYRCIVGYVIPFYQEKGNEQISLQTTSDFS-----CRI 119

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN-EKQA 134
           +      +  R  ++ L+  K+ L+ + KR    +S ILN      +  +PR ++ E QA
Sbjct: 120 NNHEGVSVSYR--RKILTIYKTALREIMKRNKECDS-ILN------AIQMPRKISAEVQA 170

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL------ 188
            ++ +  +L  +   +  D R   IL   Y  G+R+ E   L  ++I  +  T+      
Sbjct: 171 FSVKEQRMLERT-IIQSPDKRCLGILLCFY-TGIRLGEVCGLKWEDIDFEAGTMVVTRTV 228

Query: 189 -RIQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGK--------P 237
            RI+   +  +   L     K+I  +    L  F L L  +L + R             P
Sbjct: 229 SRIKNFDETKKKTVLYIGKPKSIHSVRKIPLPDFLLELARELKMERSDNNHFILTNSEYP 288

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           ++P  +Q+  ++L  +  +      H +RH+FAT  L  G D++++  ILGH  +S T
Sbjct: 289 MDPRKYQKLFQKLLTHASVK-KRKFHAIRHTFATRALELGIDIKTLSEILGHSNVSIT 345


>gi|270299658|gb|ACZ68464.1| prophage LambdaSa2, site-specific recombinase, phage integrase
           family [Staphylococcus aureus]
          Length = 173

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 21/157 (13%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+  +  L   CGLR+S+ L L   +I D Q  ++ + K  K +++P L  ++  I EY 
Sbjct: 12  RDVFLFVLGINCGLRVSDMLILKKGDIKDYQIRIK-ESKTKKHKVIP-LHHIKNEIDEYI 69

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY---------LGLPLSTTAHTL 265
                D        LF+  R         Q+ I ++R Y         +GL  +   H++
Sbjct: 70  QFLEDD------DFLFKSNRKDKHGN---QKAINRIRAYKILNEAAKNIGLE-NIGTHSM 119

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           R +F  H   +  D+  +  I  H   S T  Y  +N
Sbjct: 120 RKTFGYHYYKSTNDVALLMDIFNHSSQSVTLRYIGIN 156


>gi|225572883|ref|ZP_03781638.1| hypothetical protein RUMHYD_01074 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039748|gb|EEG49994.1| hypothetical protein RUMHYD_01074 [Blautia hydrogenotrophica DSM
           10507]
          Length = 397

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 87/210 (41%), Gaps = 33/210 (15%)

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           N  + K S  L     EK ALT      L +  +T  +  +    + +L   GLRISE  
Sbjct: 171 NPFDFKLSEVLENDTKEKVALTEEQEQALLSFIKTDNVYHKYFDDVLILLKTGLRISELC 230

Query: 175 SLTPQNIMD----------DQSTLRIQGKGDKI---------RIVPLLPSVRKA----IL 211
            LT   IMD          D   L+ + +G  I         R VPL     KA    + 
Sbjct: 231 GLT---IMDVDFNHEVVIIDHQLLKSKEQGYYIETPKTKSGTRQVPLSEETIKAFQRLMK 287

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNP----GVFQRYIRQL-RRYLGLPLS-TTAHTL 265
           +     PF ++      LF   +GKP        +F R +++  + +   PL   T HTL
Sbjct: 288 KRPKAEPFVIDGRGNF-LFVNQKGKPKVAIDYNALFVRMVKKYNKHHKDNPLPHITPHTL 346

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           RH+F T L S   + + +Q I+GH  +S T
Sbjct: 347 RHTFCTRLASKNMNPKDLQYIMGHSNISIT 376


>gi|153811011|ref|ZP_01963679.1| hypothetical protein RUMOBE_01402 [Ruminococcus obeum ATCC 29174]
 gi|149832899|gb|EDM87982.1| hypothetical protein RUMOBE_01402 [Ruminococcus obeum ATCC 29174]
          Length = 407

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 29/131 (22%)

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----------LFRGIRGKPLNPGVF---- 243
           R +PL  + +KA+++  +   +DL L  +            +F   +G  L P V     
Sbjct: 262 RDIPLTKTAKKALMKQRE---YDLLLGKRAKEQPVAGLKNFVFLNHQGNQLAPQVLDSAL 318

Query: 244 --------QRYIRQLRRYLGLPL---STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                   ++ ++Q  +  G P      +AH LRH+F T    +G D++S+Q I+GH  +
Sbjct: 319 RNIIKAYNKKELKQADKEHGEPFLLPHISAHILRHTFCTRAAESGVDVKSLQYIMGHADI 378

Query: 293 S-TTQIYTNVN 302
           + T + Y +V+
Sbjct: 379 TMTMERYNHVD 389


>gi|291544082|emb|CBL17191.1| Site-specific recombinase XerD [Ruminococcus sp. 18P13]
          Length = 362

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 65/155 (41%), Gaps = 25/155 (16%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGK-----GDKIRIVPLLPSVRKAILEYYDL 216
           +LY CG+R  E L+LTP +   D+ TLRI        G+ +   P      + I     L
Sbjct: 195 VLYWCGIREGELLALTPSDFDFDKGTLRINKSYQRLHGEDVITTPKTKKSNRTIKMPDFL 254

Query: 217 CP---------FDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           C          +D++ N ++  + +   G+ +  G     ++++R           H LR
Sbjct: 255 CEEMQDYLGMLYDVDKNDRIFNISKHYLGREMERGSKAAGVKRIR----------IHDLR 304

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           HS  + L+  G    +I   +GH  +  T  Y ++
Sbjct: 305 HSHISLLIDMGFSAVAIADRVGHESIEITYRYAHL 339


>gi|171779673|ref|ZP_02920629.1| hypothetical protein STRINF_01510 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281775|gb|EDT47209.1| hypothetical protein STRINF_01510 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 379

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 3/76 (3%)

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSI 286
           +F    G P+    F + IR     L  P+    T+H  RH+  + L   G  L++I   
Sbjct: 289 IFVSRNGIPIQDNSFNKSIRAANNRLSNPIPKHLTSHIFRHTLVSFLAEKGVPLKAIMDR 348

Query: 287 LGHFRLSTT-QIYTNV 301
           +GH    TT QIYT++
Sbjct: 349 VGHSDSKTTIQIYTHI 364


>gi|56475684|ref|YP_157273.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|58616518|ref|YP_195647.1| putative integrase [Azoarcus sp. EbN1]
 gi|58616532|ref|YP_195661.1| putative integrase [Azoarcus sp. EbN1]
 gi|56311727|emb|CAI06372.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|56315980|emb|CAI10623.1| putative integrase [Aromatoleum aromaticum EbN1]
 gi|56315994|emb|CAI10637.1| putative integrase [Aromatoleum aromaticum EbN1]
          Length = 314

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 71/162 (43%), Gaps = 27/162 (16%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEY--- 213
           A+  LL   GLR+ EA +L  Q++  + + L I+G K  K R+VPL  S  + + +Y   
Sbjct: 136 ALFGLLSVSGLRLGEARNLQLQDVDLEAAALTIRGAKFGKSRLVPLHGSTCEVLADYIAR 195

Query: 214 ----YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-----HT 264
               ++  P      +   LF    G  L+ G   R    L R +GL   + +     H 
Sbjct: 196 RNRHWEARP------VSSYLFVSSSGNRLDGGDIHRTFYALSRQIGLRGVSDSHGPRLHD 249

Query: 265 LRHSFATHLL--------SNGGDLRSIQSILGHFRLSTTQIY 298
           +RH+FAT+ L             L  + + LGH  +  TQ Y
Sbjct: 250 MRHAFATNTLVRWYQCDQDPQRQLPILSAYLGHVHVEDTQWY 291


>gi|237713543|ref|ZP_04544024.1| integrase [Bacteroides sp. D1]
 gi|229446525|gb|EEO52316.1| integrase [Bacteroides sp. D1]
          Length = 320

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (53%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           F   ++ L R L L    T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 232 FNNSLKDLARTLHLQSPVTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIY 287


>gi|120603828|ref|YP_968228.1| TOBE domain-containing protein [Desulfovibrio vulgaris DP4]
 gi|120564057|gb|ABM29801.1| TOBE domain protein [Desulfovibrio vulgaris DP4]
          Length = 438

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 16/139 (11%)

Query: 159 ILYLLYGCG-LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           + +LL+  G LR+ E L +  +  +D    L +  +G + R VPL   V   +L   D  
Sbjct: 72  LAFLLFRFGALRLGEVLGIDDEADVDRGHAL-LHVRGVQPRDVPLPEPVMAEVLRVLDD- 129

Query: 218 PFDLNLNIQLPLFRGIRGKPL--NPGVFQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLL 274
                     P+   +RG+ L  +PG  +R   +     G+P    +   LRHS A  LL
Sbjct: 130 ----------PMMFSLRGQVLRLDPGYLRRRFYERSGGCGIPRDHLSPRVLRHSRAIELL 179

Query: 275 SNGGDLRSIQSILGHFRLS 293
             G  L+ +Q +LGH  +S
Sbjct: 180 RGGVPLKVVQQVLGHQSVS 198


>gi|317474052|ref|ZP_07933331.1| tyrosine type site-specific recombinase [Bacteroides eggerthii
           1_2_48FAA]
 gi|316909894|gb|EFV31569.1| tyrosine type site-specific recombinase [Bacteroides eggerthii
           1_2_48FAA]
          Length = 63

 Score = 40.0 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 8/67 (11%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           ++H  RHSF +  +  G D+  IQ+ LGH  ++TTQIY+ + ++     M ++ D+    
Sbjct: 4   SSHMGRHSFGSLHVEMGTDMAVIQAYLGHKNITTTQIYSKIAAQQ----MCQVVDK---- 55

Query: 321 ITQKDKK 327
           IT K K+
Sbjct: 56  ITLKRKE 62


>gi|303234412|ref|ZP_07321051.1| site-specific recombinase, phage integrase family [Finegoldia magna
           BVS033A4]
 gi|302494528|gb|EFL54295.1| site-specific recombinase, phage integrase family [Finegoldia magna
           BVS033A4]
          Length = 374

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 67/159 (42%), Gaps = 33/159 (20%)

Query: 162 LLYGCGLRISEALSLTPQN-------IMDDQSTLRIQGKG--------DKIR--IVP--L 202
           LLY CGLR+ E L+LT +        +  D+S  RI GK           IR  ++P  L
Sbjct: 196 LLYWCGLRMGELLALTQEKFDFERHTLKIDESLQRIDGKNVITAPKTKKSIRTIVMPEFL 255

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
              +++ I  +Y L   DL  N      +      ++ G  +  ++++R           
Sbjct: 256 TDEIKEYIDSFYKLKSKDLIFNFS----KSYLHHEMDRGSKKSQVKRIR----------I 301

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H LRHS  + L+  G    +I   +GH  +  T  Y ++
Sbjct: 302 HDLRHSHVSLLIELGFSATAIADRVGHESIDITYRYAHL 340


>gi|299145803|ref|ZP_07038871.1| integrase [Bacteroides sp. 3_1_23]
 gi|298516294|gb|EFI40175.1| integrase [Bacteroides sp. 3_1_23]
          Length = 195

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 14/166 (8%)

Query: 142 LLHTSHETKW-IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           LLH   +  W + AR      L +   LR+S+ LSL   +I+   S  +I+ K  K+R +
Sbjct: 24  LLHKDRQYLWELYAR------LAFCTALRVSDVLSLAWADILHKGSLTKIEKKTGKVRKI 77

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P   S++  I E Y L     N N +L       G  ++     R +++ +    L +  
Sbjct: 78  PFNLSIQTRIEELYILLKRP-NPN-ELIFKSKFTGVSVSSQYLNRIMKEWKAKYKLDIEN 135

Query: 261 -TAHTLRHSFATHLLSNGGD----LRSIQSILGHFRLSTTQIYTNV 301
            + HT R +F  ++     +    L  +  I  H  +  T+IY  +
Sbjct: 136 FSTHTFRKTFGRYVYDTSENKSEALLLLNRIFNHSNIEITKIYICI 181


>gi|293370097|ref|ZP_06616662.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292634825|gb|EFF53349.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 321

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 16/183 (8%)

Query: 129 LNEKQALTLVD-NVLLHTSHETKWIDARNSAILYLLYG-CGLRISEALSLTPQNIMDDQS 186
           + +K+AL  V+ + LL+   +++ +  R  AI  L++  CG+  ++   L    +  +Q+
Sbjct: 109 VRQKKALPAVELHKLLYEDPKSERLR-RTQAIAALMFQFCGMSFADLAHLEKSAL--EQN 165

Query: 187 TLRIQGKGDKIRI-VPLLPSVRKAILEYYDL------CP---FDLNLNIQLPL-FRGIRG 235
            LR      K  + V +L + R+ I +  +       CP   FD+    Q  L  RG R 
Sbjct: 166 VLRYNRIKTKTPMSVEVLDTAREMINQLRNREDAQPDCPDYLFDILSGDQKRLDERGYRE 225

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  F   ++ L R L L    T++TLRHS+AT     G  +  I   LGH  + TT
Sbjct: 226 YQSALRQFNNCLKDLARALHLQSPVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTT 285

Query: 296 QIY 298
           QIY
Sbjct: 286 QIY 288


>gi|56475687|ref|YP_157276.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|56311730|emb|CAI06375.1| phage-related integrase [Aromatoleum aromaticum EbN1]
          Length = 325

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 19/156 (12%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           LL   GLR+SEA++L+  ++      L I + K  K R VP+ PS  +A+  Y  +    
Sbjct: 143 LLASTGLRVSEAVALSDTDVDLKYGMLTIVRTKFAKSRYVPMHPSTVEALRRYRWMRDLV 202

Query: 221 L-NLNIQLPLF---RGI-RGKPLNPGVFQRYIRQLRRYL-----GLPLSTTAHTLRHSFA 270
           + +     P F   RG  RG PL     +R    LR+ L     G   +   H LRH+F 
Sbjct: 203 IESARADAPFFVVTRGQRRGSPLTRNEVERVFAGLRKQLAWNNRGTHHAPRIHDLRHTFV 262

Query: 271 THLL----SNGGDLR----SIQSILGHFRLSTTQIY 298
              +    + G D+     S+ + +GH  ++ T  Y
Sbjct: 263 VRRIVQWQAQGVDIDQAMLSLSTYVGHAMVTNTYWY 298


>gi|84386542|ref|ZP_00989569.1| site-specific recombinase, phage integrase family [Vibrio
           splendidus 12B01]
 gi|84378647|gb|EAP95503.1| site-specific recombinase, phage integrase family [Vibrio
           splendidus 12B01]
          Length = 129

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 26/37 (70%)

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           L + F   LL +G D+R++Q +LGH  + TTQIYT+V
Sbjct: 78  LYNQFIKQLLKSGSDIRTVQELLGHSDVKTTQIYTHV 114


>gi|307545892|ref|YP_003898371.1| site-specific recombinase, phage integrase family [Halomonas
           elongata DSM 2581]
 gi|307217916|emb|CBV43186.1| site-specific recombinase, phage integrase family [Halomonas
           elongata DSM 2581]
          Length = 352

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 68/145 (46%), Gaps = 11/145 (7%)

Query: 166 CGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYD--LCPFDLN 222
            G+R SE L+LT   +   +  +R+   K ++ R+VPL  +  +   +  +  + PFD +
Sbjct: 204 TGMRSSEILTLTRSQVDVKRRVVRLTDTKNNEARLVPLTQAATEVFKQALNNPVRPFDCD 263

Query: 223 LNIQLPLFRGIRGK--PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
           L     +F G  GK     P  + +   Q ++  GL      H LRH   + L+  G   
Sbjct: 264 L-----VFFGEPGKDGKRGPYAYTKLWNQAKKQAGLD-DFRFHDLRHEAVSRLVEAGLSD 317

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKN 305
           + + +I GH  +   + YT++ +++
Sbjct: 318 QEVATISGHKSMQMLRRYTHLRAED 342


>gi|293365468|ref|ZP_06612177.1| phage integrase family integrase/recombinase [Streptococcus oralis
           ATCC 35037]
 gi|307703424|ref|ZP_07640366.1| tyrosine recombinase xerD [Streptococcus oralis ATCC 35037]
 gi|322375255|ref|ZP_08049768.1| integrase/recombinase, phage integrase family [Streptococcus sp.
           C300]
 gi|291315836|gb|EFE56280.1| phage integrase family integrase/recombinase [Streptococcus oralis
           ATCC 35037]
 gi|307622831|gb|EFO01826.1| tyrosine recombinase xerD [Streptococcus oralis ATCC 35037]
 gi|321279518|gb|EFX56558.1| integrase/recombinase, phage integrase family [Streptococcus sp.
           C300]
          Length = 356

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 109/288 (37%), Gaps = 53/288 (18%)

Query: 58  ITIQTIRQLSYTEIRAFI----------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI 107
           I +  +  +S  ++ AFI          +    Q +   ++ R+LS + S  KYL +   
Sbjct: 66  IPLSVLENMSKKDMEAFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVE 125

Query: 108 TTESNILNMRNLKKSNSL--------PRALNEKQALTLVDNVLLHTSHETKWID------ 153
                    RN+ K  S          RA N KQ L L D     T     +ID      
Sbjct: 126 NDLGEPYFYRNVMKKVSTKKKKETLAARAENIKQKLFLGD----ETEGFLTYIDQEYPQQ 181

Query: 154 -------------ARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKI 197
                         R+ AI+ LL   G+R+SEA++L  +++   M      R  GK D +
Sbjct: 182 LSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDSV 241

Query: 198 RIV----PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            +     P L +      + Y     D  L   L L+RG+  + ++    ++ + +    
Sbjct: 242 NVAAFAKPYLENYLAIRNQRYKTEKTDTALF--LTLYRGVPNR-IDASSVEKMVAKYSE- 297

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               +  T H LRH+ AT L         +   LGH     T +YT++
Sbjct: 298 -DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHI 344


>gi|289671793|ref|ZP_06492683.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Pseudomonas syringae pv. syringae FF5]
          Length = 160

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 26/127 (20%), Positives = 60/127 (47%)

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            + A ++  R       +    ++ I+  +    +  + +   +L +R++K  +      
Sbjct: 15  HVTALVATLRQDDYAPNTTSLYVNAIRGVMNEAWRHDLISHDQLLKIRSIKPVSGTRLVK 74

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
                 TL+  ++   + + +    R++AI+ +LYG G+R SE+++L    I   + +LR
Sbjct: 75  GRNIRRTLIRELMEACAADPRPQGRRDAAIIAILYGSGMRKSESVNLDLSQIDFAERSLR 134

Query: 190 IQGKGDK 196
           + GKG+K
Sbjct: 135 VLGKGNK 141


>gi|196040606|ref|ZP_03107905.1| site-specific recombinase, phage integrase family [Bacillus cereus
           NVH0597-99]
 gi|196028396|gb|EDX67004.1| site-specific recombinase, phage integrase family [Bacillus cereus
           NVH0597-99]
          Length = 370

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 69/174 (39%), Gaps = 31/174 (17%)

Query: 153 DARNSAILYLLYGCGLRISEALSL-------------TPQNIMDDQSTLRIQGKGDKIRI 199
           D+R S + ++    G+R  E L L               Q +  D  T  + GK      
Sbjct: 187 DSRYSIVFHMALVTGMRQGELLGLRWKDVDLEKGHLTISQTLSHDGKTFLLGGKTKSSLR 246

Query: 200 VPLLPSVRKAILEYYDLCPF-----------DLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
             LLP+   A L+ +                D +L +  P      G P+NP   +R + 
Sbjct: 247 KILLPASTVAKLKKHRAVVLKEKLSQGEEYQDNDLVMCTP-----SGTPINPANVRRSLN 301

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
            L +   +P     H LRH+ AT LL+ G +++ I   LGH  +  T   Y++V
Sbjct: 302 ALIKKAAVP-KIRFHDLRHTHATLLLAKGVNVKVISERLGHSNIKITLDTYSHV 354


>gi|293373998|ref|ZP_06620337.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|299149024|ref|ZP_07042086.1| integrase [Bacteroides sp. 3_1_23]
 gi|292630959|gb|EFF49598.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|298513785|gb|EFI37672.1| integrase [Bacteroides sp. 3_1_23]
          Length = 318

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (53%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           F   ++ L R L L    T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 235 FNNRLKDLARALRLKSPVTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIY 290


>gi|254385109|ref|ZP_05000442.1| integrase [Streptomyces sp. Mg1]
 gi|194343987|gb|EDX24953.1| integrase [Streptomyces sp. Mg1]
          Length = 375

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 73/169 (43%), Gaps = 32/169 (18%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQ---------STLRIQG-----KGDKIR 198
           D R   I  L+ GCG+R  EA ++   N++             T +  G     K    R
Sbjct: 195 DDRFLLIADLMSGCGMRNGEAFAVNLNNLVAGDVYRITEQVNQTTKTYGRLKHRKPTDYR 254

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG------VFQRYIRQLRR 252
             PL   VR+ I E+Y     D +  +   L R     P++P         Q   ++++R
Sbjct: 255 DAPLPARVRETI-EWYA----DKHGTVDGYLLR----HPMDPTRPFLAYYLQNQWQRIKR 305

Query: 253 Y--LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIY 298
              +G+P     ++LRH FA++ L+NG  +  +   +GH  L  T +IY
Sbjct: 306 AGEVGVPDGMVIYSLRHFFASNCLTNGIPITDVAEWMGHKSLDITFKIY 354


>gi|169159217|dbj|BAG12109.1| Tn4661 TnpS [Pseudomonas aeruginosa]
          Length = 348

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 27/173 (15%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRI---QGKGDKIRIVPLLPSVRK 208
           R++A+L + +  G R  E   L  ++I  +     TL +   +G  D +     +P++R+
Sbjct: 162 RDTALLLIGFWRGFRSDELCRLQVEHIQAEAGAGMTLFLPWSKGDRDNLGTTHYVPALRR 221

Query: 209 AILEYYDLCPFDLNLNI-------------QLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
                  LCP    L+              +L  +  +    LNPG     +RQ+ +  G
Sbjct: 222 -------LCPVQAYLDWIGAAGIARGMVFRRLDRWGNLNEAGLNPGSLIVLLRQILQRAG 274

Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +     T+H+LR  FAT   +NG D++++ + +G   + +   Y +     GG
Sbjct: 275 IQADLYTSHSLRRGFATWATANGWDIKALMTYVGWKDIKSAMRYIDPAISFGG 327


>gi|149916304|ref|ZP_01904824.1| site-specific recombinase, phage integrase family protein
           [Roseobacter sp. AzwK-3b]
 gi|149809758|gb|EDM69610.1| site-specific recombinase, phage integrase family protein
           [Roseobacter sp. AzwK-3b]
          Length = 363

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 29/42 (69%)

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           H LRHS+A+ L++ G  +  +Q +LGH  ++TTQ Y ++ S+
Sbjct: 306 HDLRHSYASTLINAGVSIYEVQKLLGHTNITTTQRYAHLASE 347


>gi|116050169|ref|YP_791014.1| cointegrate resolution protein S [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|152983499|ref|YP_001348418.1| cointegrate resolution protein S [Pseudomonas aeruginosa PA7]
 gi|296389365|ref|ZP_06878840.1| cointegrate resolution protein S [Pseudomonas aeruginosa PAb1]
 gi|33114141|gb|AAP94698.1| putative cointegrate resolution protein S [Pseudomonas aeruginosa]
 gi|115585390|gb|ABJ11405.1| Cointegrate resolution protein S [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|150958657|gb|ABR80682.1| cointegrate resolution protein S [Pseudomonas aeruginosa PA7]
 gi|187939992|gb|ACD39127.1| cointegrate resolution protein S [Pseudomonas aeruginosa]
 gi|187940185|gb|ACD39314.1| phage integrase family protein [Pseudomonas aeruginosa]
          Length = 323

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 27/173 (15%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRI---QGKGDKIRIVPLLPSVRK 208
           R++A+L + +  G R  E   L  ++I  +     TL +   +G  D +     +P++R+
Sbjct: 137 RDTALLLIGFWRGFRSDELCRLQVEHIQAEAGAGMTLFLPWSKGDRDNLGTTHYVPALRR 196

Query: 209 AILEYYDLCPFDLNLNI-------------QLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
                  LCP    L+              +L  +  +    LNPG     +RQ+ +  G
Sbjct: 197 -------LCPVQAYLDWIGAAGIARGMVFRRLDRWGNLNEAGLNPGSLIVLLRQILQRAG 249

Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +     T+H+LR  FAT   +NG D++++ + +G   + +   Y +     GG
Sbjct: 250 IQADLYTSHSLRRGFATWATANGWDIKALMTYVGWKDIKSAMRYIDPAISFGG 302


>gi|332826344|gb|EGJ99187.1| hypothetical protein HMPREF9455_00511 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 410

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 23/144 (15%)

Query: 166 CGLRISEALSLTPQNIMDDQS------TLRIQGKGDK-IRIVPLLPSVRKAILEYYDLCP 218
           CGL  S+  +LT  NI           T R +   D  IR++     V K I+E Y    
Sbjct: 255 CGLSYSDVKNLTRDNIQTSFDGHLWIITRRQKTNTDSSIRLL----EVPKRIIEKYKGYT 310

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNG 277
            D  +    P+       P N G   + ++++    G+    T H  RH+F T L +S G
Sbjct: 311 RDTRV---FPM-------PGN-GTCNKILKKIAEQCGIKTRLTYHVARHTFGTLLTISQG 359

Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301
             + ++  ++GH  + TTQIY  +
Sbjct: 360 VPIETVSRMMGHTNIKTTQIYAKI 383


>gi|328466756|gb|EGF37877.1| integrase/recombinase XerC [Listeria monocytogenes 1816]
          Length = 357

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 29/157 (18%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL--PSVRKAILEYYDLCPF 219
           +LY CG+R+ E L+LT  +   ++ TL I     +++ + ++  P   K+          
Sbjct: 194 ILYWCGIRLGELLALTASDFDFNKGTLSISKSCQRLKGMDVITEPKTPKS---------- 243

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVF-----QRYIRQLRRYLGLPLSTTA----------HT 264
             N  IQ+P F G   +     ++     +R     + YL   ++  A          H 
Sbjct: 244 --NRIIQMPEFLGEEIQEYIQSIYKWEPDERLFPITKSYLHSEMTRGAKEQKIKRIRIHD 301

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LRHS  + L+ +G    +I   LGH  +  T  Y ++
Sbjct: 302 LRHSHVSLLIDSGFSAVAIADRLGHESIDVTYRYAHL 338


>gi|322387158|ref|ZP_08060768.1| phage integrase family integrase/recombinase [Streptococcus
           infantis ATCC 700779]
 gi|321141687|gb|EFX37182.1| phage integrase family integrase/recombinase [Streptococcus
           infantis ATCC 700779]
          Length = 265

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 8/141 (5%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +++ L   G R+SE + L  +++  +     I  KG KIR + +   +R + L +     
Sbjct: 114 VVWFLGATGARVSELIKLKVEHV--EIGYFDIYSKGGKIRRLYIPKKLRNSCLSW----- 166

Query: 219 FDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            +        LF     +P+   GV Q+      +Y         H+ RH FA + L+  
Sbjct: 167 LESENRRSGYLFLNKFNEPITARGVAQQLKNYADKYKMNSKVVYPHSFRHLFAKNFLAKY 226

Query: 278 GDLRSIQSILGHFRLSTTQIY 298
            D+  +  ++GH  + TT+IY
Sbjct: 227 NDIALLADLMGHESIETTRIY 247


>gi|296170210|ref|ZP_06851803.1| integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895086|gb|EFG74804.1| integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 387

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 77/197 (39%), Gaps = 20/197 (10%)

Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           T  ++ L  RN  +     +  + K+++ L+D   L T    K  D    A+L   + CG
Sbjct: 164 TAVADDLIDRNPCRIKGAAQVKHAKRSVVLLDAAQL-TELAVKMPDDARLAVLLAGW-CG 221

Query: 168 LRISEALSLTPQNIMDDQSTLRI-------QGK--------GDKIRIVPLLPSVRKAILE 212
           LR  E  +L   +I  D ST+RI       +GK         +  R+V + P VR A+L+
Sbjct: 222 LRKGEVFALRRCDIAADGSTVRIERAVTYREGKFEVGPTKTRESRRVVSVPPHVRPAVLD 281

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +  L       +  L       G       F+      R  +G P     H LRH+    
Sbjct: 282 H--LARHTAEGDEALVFTEPSTGSFAGEKRFRTAWEAAREAIGQP-ELHFHDLRHAAGVM 338

Query: 273 LLSNGGDLRSIQSILGH 289
               G  LR +   LGH
Sbjct: 339 AAQTGATLRELMDRLGH 355


>gi|262407328|ref|ZP_06083876.1| integrase [Bacteroides sp. 2_1_22]
 gi|262354136|gb|EEZ03228.1| integrase [Bacteroides sp. 2_1_22]
          Length = 323

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (53%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           F   ++ L R L L    T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 235 FNNSLKDLARTLHLQSPVTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIY 290


>gi|257431426|ref|ZP_05607800.1| integrase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257277872|gb|EEV08536.1| integrase [Staphylococcus aureus subsp. aureus 68-397]
          Length = 345

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 72/148 (48%), Gaps = 5/148 (3%)

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+S  L+++   G  +S A ++  ++I   ++T+ I  +  K    P   S+ K+ +++ 
Sbjct: 183 RSSLALFIMICTGCHVSGARNIKIEHINQVKNTIFIDER--KTNTSPRYISIAKSDMKHI 240

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                   ++    +F+   G  +N       ++   R   +P+  T+H LRH+  ++LL
Sbjct: 241 MDVISTFAISYDGYIFKEA-GSIINLHAINNALKSACRVNNIPI-ITSHALRHTHCSYLL 298

Query: 275 SNGGDLRSIQSILGHFRLS-TTQIYTNV 301
           + G  +  I   LGH  ++ TT +Y+++
Sbjct: 299 AKGVSIHYISKRLGHKNIAITTSVYSHL 326


>gi|291087353|ref|ZP_06346213.2| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
 gi|291075475|gb|EFE12839.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
          Length = 363

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 80/189 (42%), Gaps = 20/189 (10%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGD-------------KIR 198
           + R+  +L LL   G RI E L +     +D ++  L +  + D             K++
Sbjct: 178 NCRDQILLLLLAETGFRIGELLGVRYATDIDYERHLLYVNFREDNENEARAKNAEYRKVK 237

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLP 257
           I      + +  +E Y    F     I + +     GKP+ + GV+   + +L++  G+ 
Sbjct: 238 ISDATFEILQFYMEEYQDLIFQQEYLI-INIAGDYAGKPMQDTGVYA-LMERLQKKTGIK 295

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           +  T H LRH FA      G  L  I   LGH  + TT  Y N++ +   +   + Y Q 
Sbjct: 296 V--TPHMLRHYFANARRKAGWKLELISQALGHRNIETTMRYLNISDEELIEVSEKFYGQ- 352

Query: 318 HPSITQKDK 326
           H SI   DK
Sbjct: 353 HQSIYGVDK 361


>gi|210623381|ref|ZP_03293778.1| hypothetical protein CLOHIR_01728 [Clostridium hiranonis DSM 13275]
 gi|210153642|gb|EEA84648.1| hypothetical protein CLOHIR_01728 [Clostridium hiranonis DSM 13275]
          Length = 376

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 3/70 (4%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
           +Y+ ++  Y  L +    H LRH++AT L+  G +++ +  +LGH  + TT  IY N N+
Sbjct: 303 KYLSRVINY-DLGIKFNYHNLRHTYATLLIEKGANIKDVSVLLGHASIKTTMDIYVN-NT 360

Query: 304 KNGGDWMMEI 313
            N  D  + I
Sbjct: 361 DNMRDKTLNI 370


>gi|160945662|ref|ZP_02092888.1| hypothetical protein FAEPRAM212_03193 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443393|gb|EDP20398.1| hypothetical protein FAEPRAM212_03193 [Faecalibacterium prausnitzii
           M21/2]
          Length = 392

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 57/141 (40%), Gaps = 17/141 (12%)

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           CGL+  +   L    +  +++  RI  +    ++V   P  R +  E     P    L I
Sbjct: 223 CGLQWGD-FDLKLGTLKINRTVCRISCENGHTKVVIQTPKTRTSRREI----PIPKQLLI 277

Query: 226 QLPLFRGI-----------RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
            L   RG              KP  P  +++ I+   +   +      H LRH+FAT  L
Sbjct: 278 MLKKLRGCVSNAAWFLSGNESKPTEPRCYRKSIKSYLKQATV-RQVRPHALRHTFATTCL 336

Query: 275 SNGGDLRSIQSILGHFRLSTT 295
             G D++++  +LGH   + T
Sbjct: 337 QAGCDVKTLSELLGHANANIT 357


>gi|47091895|ref|ZP_00229689.1| site-specific recombinase, phage integrase family, putative
           [Listeria monocytogenes str. 4b H7858]
 gi|47019611|gb|EAL10350.1| site-specific recombinase, phage integrase family, putative
           [Listeria monocytogenes str. 4b H7858]
          Length = 330

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 29/157 (18%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL--PSVRKAILEYYDLCPF 219
           +LY CG+R+ E L+LT  +   ++ TL I     +++ + ++  P   K+          
Sbjct: 167 ILYWCGIRLGELLALTASDFDFNKGTLSISKSCQRLKGMDVITEPKTPKS---------- 216

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVF-----QRYIRQLRRYLGLPLSTTA----------HT 264
             N  IQ+P F G   +     ++     +R     + YL   ++  A          H 
Sbjct: 217 --NRIIQMPEFLGEEIQEYIQSIYKWEPDERLFPITKSYLHSEMTRGAKEQKIKRIRIHD 274

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LRHS  + L+ +G    +I   LGH  +  T  Y ++
Sbjct: 275 LRHSHVSLLIDSGFSAVAIADRLGHESIDVTYRYAHL 311


>gi|330942575|gb|EGH45152.1| Phage integrase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 218

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 26/127 (20%), Positives = 60/127 (47%)

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            + A ++  R       +    ++ I+  +    +  + +   +L +R++K  +      
Sbjct: 71  HVTALVATLRQDDYAPNTTSLYVNAIRGVMNEAWRHDLISHDQLLKIRSIKPVSGTRLVK 130

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
                 TL+  ++   + + +    R++AI+ +LYG G+R SE+++L    I   + +LR
Sbjct: 131 GRNIRRTLIRELMEACAADPRPQGRRDAAIIAILYGSGMRKSESVNLDLSQIDFAERSLR 190

Query: 190 IQGKGDK 196
           + GKG+K
Sbjct: 191 VLGKGNK 197


>gi|295084599|emb|CBK66122.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 409

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 31/52 (59%)

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           ++++  +L + +  T +  RHSFAT L  +G ++  I   LGH  LSTTQ Y
Sbjct: 341 LKKIGAHLDISIPLTTYVARHSFATVLKRSGVNIALISESLGHTSLSTTQYY 392


>gi|260171255|ref|ZP_05757667.1| integrase [Bacteroides sp. D2]
          Length = 316

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (53%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           F   ++ L R L L    T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 233 FNNRLKDLARALRLKSPVTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIY 288


>gi|317179476|dbj|BAJ57264.1| integrase/recombinase [Helicobacter pylori F30]
          Length = 285

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 120/270 (44%), Gaps = 33/270 (12%)

Query: 48  IFLAF-YTEEKITIQTIRQLSYTEIRAFI---SKRRTQKIGDRSLKRSLSGIKSFLKYL- 102
           +FL F Y + +I ++++  L+  +I  F+   +K R       S+ + +  ++ F   L 
Sbjct: 5   LFLFFEYFDNRIKLKSLHNLAEEQIIDFLFGLAKNRKPS----SMAKYVMYLRQFFDCLD 60

Query: 103 KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
           +KR  + +  + N+   KK   LP+ LN+      V  +L +  H     + RN  IL L
Sbjct: 61  RKRNYSFDFELKNLSFAKKETHLPKHLNKNDFKAFVQALLKY--HPKTSFEKRNQCILLL 118

Query: 163 LYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           +   GLR  EAL L  +NI   ++   L I+ K +K R       + K  L+     P +
Sbjct: 119 IALGGLRKFEALYLELKNIALENNHYRLLIKDKNNKERYA----YIEKEFLQ----VPLN 170

Query: 221 --LNLNIQLPLFRG--IRGKPLNPGV-----FQRYIRQLRRYLGLPLSTTA---HTLRHS 268
             L+   +L  F+G  +  K  N         + +I ++ +   + + +     H  RHS
Sbjct: 171 AWLSDTKRLKSFKGRFVFKKAKNNTTQKTCSLKGFIAKIFKLSNIDVKSYGLGLHLFRHS 230

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           FAT +     DL      LGH  L +T+IY
Sbjct: 231 FATFIYDETQDLVLTSRALGHSSLLSTKIY 260


>gi|295104994|emb|CBL02538.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 385

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 31/44 (70%), Gaps = 1/44 (2%)

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
           T H LRH+F T  +S+G +++++Q ++GH  +  T  +YT++++
Sbjct: 329 TPHVLRHTFCTRKVSSGMNIKAVQYLMGHSSVQITLDVYTSIDA 372


>gi|327459935|gb|EGF06275.1| phage integrase family prophage LambdaSa03 [Streptococcus sanguinis
           SK1057]
          Length = 247

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 26/159 (16%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKI------RIVPLLPSVR---------KAIL 211
           G RI EA+++   N   +   L I G  D I       +   + S R         + I 
Sbjct: 71  GYRIGEAVAIERHNYRKESRKLDIHGTLDSIDRNAKKELTKTISSYRTTNLTNREIEIID 130

Query: 212 EYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVF----QRYIRQLRRYLGLPLSTTAH 263
           E+  L     + N +L     +F    GKP+    F    Q+  ++L + +  PLS  +H
Sbjct: 131 EFIKLNELTTSTNPELSDTDYIFLNNHGKPIQRNAFNITLQKANQRLDKPINKPLS--SH 188

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
             RH+  + L      +++I + +GH   +TT QIYT+V
Sbjct: 189 IFRHTLISMLAERNVPIKAIMARVGHKDSNTTMQIYTHV 227


>gi|325300525|ref|YP_004260442.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324320078|gb|ADY37969.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 405

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 31/53 (58%)

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           Y++++   +GL  S T +T RH++A+ L   G  L  I   LGH  L TTQIY
Sbjct: 330 YLKKIGTMVGLQASLTTYTGRHTWASILRDMGTSLSVISKGLGHESLKTTQIY 382


>gi|322836404|ref|YP_004215781.1| integrase [Rahnella sp. Y9602]
 gi|321170957|gb|ADW76654.1| integrase family protein [Rahnella sp. Y9602]
          Length = 263

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 26/44 (59%)

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  T H  RHS+A H       L+ +Q++LGH +  +T++YT V
Sbjct: 183 VPVTPHVFRHSYAMHHCYQHTPLKVLQALLGHEKAESTEVYTRV 226


>gi|317480558|ref|ZP_07939648.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316903287|gb|EFV25151.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 377

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           V  +++R+     GL      H  RH++ T L++ G DL +   ++GH  +  TQ+Y  +
Sbjct: 302 VLNKHLRKWAELAGLDRHLHFHLSRHTYGTMLITAGVDLYTASKMMGHADVRPTQVYAKI 361


>gi|315919565|ref|ZP_07915805.1| integrase [Bacteroides sp. D2]
 gi|313693440|gb|EFS30275.1| integrase [Bacteroides sp. D2]
          Length = 318

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (53%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           F   ++ L R L L    T++TLRHS+AT     G  +  I   LGH  + TTQIY
Sbjct: 235 FNNRLKDLARALRLKSPVTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIY 290


>gi|308272076|emb|CBX28684.1| hypothetical protein N47_G40080 [uncultured Desulfobacterium sp.]
          Length = 312

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 56/282 (19%), Positives = 115/282 (40%), Gaps = 35/282 (12%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK- 121
           +R +  +++  + +KR+     +  + + +   +S +       + +E  +   + +KK 
Sbjct: 47  VRNIKTSDLENYQAKRKASGYSNSYIDQEIGAARSVVYKAFDDAMVSEDTVRAFKKVKKL 106

Query: 122 ----SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
               +N+  + L  ++   L++ +  HT            A++ + Y  G+R  E ++LT
Sbjct: 107 LKSNANTRKKVLYIEEFKRLMEALPPHTR-----------AVVAMGYYTGMRKGEIINLT 155

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
              +      +++     K R    +P +  A+       P  ++ N  + LF+G   KP
Sbjct: 156 WDKVDLKDRMIKLDAADTKDREAREVP-ICDALYNILKDIPKAIHDN-HVFLFKG---KP 210

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTA------HTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           +N   F+  +R   R +G+P           H  RH F T++  +G     + +I GH  
Sbjct: 211 VND--FRTALRTACRAVGIPYGRGTKDGFVFHDTRHCFNTNMRKSGVPESVVMNITGHST 268

Query: 292 LSTTQIYTNVNSK------NGGDWMMEIYDQTHPSITQKDKK 327
                 Y  V++K      N  +  +E  DQT   +  K KK
Sbjct: 269 REMFLRYDTVDAKDIKKAVNQMEGFLESVDQTVDQVPIKAKK 310


>gi|325679180|ref|ZP_08158771.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324109109|gb|EGC03334.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 361

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 31/151 (20%)

Query: 167 GLRISEALSLTPQNIMDDQSTL-------RIQG-KGD-KIRIVPLLPSVRKAILEYYDLC 217
           G+RI E  +L  +NI  ++  L       RIQ  +GD K +++   P  + +  E     
Sbjct: 198 GMRIGEVCALRWENIDTEKRVLTVRHTIQRIQCFEGDNKTKVIIAEPKSQSSRREI---- 253

Query: 218 PFDLNLNIQLPLFRGIRGK-----------PLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           P    L   +P+ + ++GK           P+ P   Q   +++    G+      H LR
Sbjct: 254 PIPDCL---IPMLKELKGKNSAFILTGTEKPIEPRTMQYRFKRILENAGVR-EYNYHVLR 309

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           H FA+  +  G D++++  ILGH   S+ QI
Sbjct: 310 HCFASGAIELGFDVKTLSEILGH---SSVQI 337


Searching..................................................done


Results from round 2




>gi|254780882|ref|YP_003065295.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040559|gb|ACT57355.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 328

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 328/328 (100%), Positives = 328/328 (100%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI
Sbjct: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK
Sbjct: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN
Sbjct: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP
Sbjct: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN
Sbjct: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           VNSKNGGDWMMEIYDQTHPSITQKDKKN
Sbjct: 301 VNSKNGGDWMMEIYDQTHPSITQKDKKN 328


>gi|315122698|ref|YP_004063187.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496100|gb|ADR52699.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 324

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 235/327 (71%), Positives = 279/327 (85%), Gaps = 7/327 (2%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ME  NL EIV+ ELL+ERQNWL +L++E GLSKLTLQSYE D RQFL F+AFYT EKI +
Sbjct: 1   MERKNLHEIVTTELLEERQNWLNSLKVEHGLSKLTLQSYERDMRQFLTFMAFYTGEKIDL 60

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           Q +RQL YT+IRAF+SKRR   I +RSL RSLSGI+SFLKYLKKR+IT E+NILNM+NLK
Sbjct: 61  QAMRQLLYTDIRAFVSKRRLHGIENRSLTRSLSGIRSFLKYLKKRQITGEANILNMKNLK 120

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           KSNSLP+ L+EKQAL L+ N  ++T ++TKWI+ARNSAILYLLYGCGLRISE LSLTPQN
Sbjct: 121 KSNSLPKPLSEKQALNLI-NYDINTHNDTKWINARNSAILYLLYGCGLRISETLSLTPQN 179

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I+DD+S+LRI GKG+K RIVPLL SVR+ I++YY LCPFDL  +I+LPLFRG RGKPLNP
Sbjct: 180 IIDDESSLRITGKGNKTRIVPLLSSVREIIMKYYTLCPFDL--HIELPLFRGARGKPLNP 237

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           GVFQRYIR LR+ L LP +TT HTLRHSFATH+LSNGGDLRSIQS+LGH RLS+TQ+YTN
Sbjct: 238 GVFQRYIRYLRQNLSLPTTTTPHTLRHSFATHILSNGGDLRSIQSVLGHARLSSTQVYTN 297

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKDKK 327
           V+SK     ++EIYDQ+HP +T  +KK
Sbjct: 298 VDSKR----IIEIYDQSHPIVTNNNKK 320


>gi|121535764|ref|ZP_01667566.1| tyrosine recombinase XerD [Thermosinus carboxydivorans Nor1]
 gi|121305663|gb|EAX46603.1| tyrosine recombinase XerD [Thermosinus carboxydivorans Nor1]
          Length = 295

 Score =  299 bits (767), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 100/305 (32%), Positives = 155/305 (50%), Gaps = 15/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              ++  L +ERGL++ TL+SY  D RQF +FL     +   +  I+  +   I  +++ 
Sbjct: 5   VDEFINYLAVERGLAQNTLESYGRDLRQFQLFL-----QNDKLDIIKDSNRNTILNYLNN 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            +++     ++ R+L+ IKSF +YL + +   +    N+ + K    LP+ L+  +   L
Sbjct: 60  LQSKGRAVSTISRNLAAIKSFYQYLVRERYIDKDPAANLESPKLEKKLPKILSIAEVEEL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +        +       R+ A+L LLY  G+R+SE +SL   ++  D   ++  GKG K 
Sbjct: 120 L-----KQPNSLLPTGLRDKAMLELLYATGIRVSELISLNITDVNLDMGYIKCYGKGAKE 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVPL     K + EY       L      P LF    G  L    F + I++  +   +
Sbjct: 175 RIVPLGSIAAKCVQEYIAKGRPKLVRTYDEPALFVNHHGNRLTRQGFWKIIKKYAQEANI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT+V      + + E+YD+
Sbjct: 235 TKEITPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHVT----KNRLKEVYDK 290

Query: 317 THPSI 321
            HP  
Sbjct: 291 AHPRA 295


>gi|209551233|ref|YP_002283150.1| site-specific tyrosine recombinase XerC [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209536989|gb|ACI56924.1| tyrosine recombinase XerC [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 311

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 151/318 (47%), Positives = 206/318 (64%), Gaps = 8/318 (2%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N L  I    L+ ER  WL+NL  ER LS+ TL +YE DTRQFL FL  +     T+  I
Sbjct: 2   NELLVIADPRLMAERAAWLENLARERRLSEHTLDAYERDTRQFLTFLTGHLAGPATLGDI 61

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           R+L   + RAF++ RR Q  G RSL R+L+G++S L+YL+K+ +   +    +R+ K+  
Sbjct: 62  RELRPADFRAFLAARRKQGSGARSLGRNLAGLRSLLRYLEKKGLVNAAGAGAIRSPKQPK 121

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           SLP+ L++ QA+T+V N      H+  WI AR++A++ LLYGCGLRISEAL L P ++  
Sbjct: 122 SLPKPLSDTQAITVVSNE--AQLHDEPWIAARDAAVMTLLYGCGLRISEALDLIPSDLKK 179

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
             +TLRI GKG+K R+VPLL  V  A+ +Y  LCP+DL      PLFRG RG  L   + 
Sbjct: 180 GATTLRITGKGNKTRLVPLLSVVFDAVEKYRTLCPYDLEPGE--PLFRGARGGKLQAAII 237

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           QR +++LR   GLP + T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ+YT V++
Sbjct: 238 QRAMQKLRSAFGLPETATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDA 297

Query: 304 KNGGDWMMEIYDQTHPSI 321
                 ++E+YD+ HP  
Sbjct: 298 SR----LLEVYDRAHPRA 311


>gi|222087447|ref|YP_002545984.1| tyrosine recombinase XerC [Agrobacterium radiobacter K84]
 gi|221724895|gb|ACM28051.1| tyrosine recombinase XerC [Agrobacterium radiobacter K84]
          Length = 311

 Score =  298 bits (764), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 150/318 (47%), Positives = 205/318 (64%), Gaps = 8/318 (2%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N L  I   +L+ ER  WL+ L  ER LS  TL +YE DTRQFL FL  +     +I  I
Sbjct: 2   NELLIIADPKLMDERSRWLEVLGQERRLSAHTLDAYERDTRQFLTFLTGHLGGPASINDI 61

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           + L   + R F++ RR    G RSL R+L+G++S L+YL+K+ +   +    +R+ K+  
Sbjct: 62  QALRPADFRGFLAARRKDGAGARSLGRNLAGLRSLLRYLEKKGLVNAAGAGAVRSPKQPK 121

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           SLP+ L++ QA+T+V +      HE  WI AR++A+L LLYGCGLRISEAL LTP +I  
Sbjct: 122 SLPKPLSDTQAITVVSDE--AQLHEEPWIAARDAAVLTLLYGCGLRISEALDLTPDDIRP 179

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
             + LRI GKG+K R+VPLLP V +A+  Y  +CP+ L+     PLFRG RG  L+PG+ 
Sbjct: 180 GATALRITGKGNKTRLVPLLPVVAEAVERYRAICPYHLDAGS--PLFRGARGGKLHPGII 237

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           QR +++LR   GLP + T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ+YT V+ 
Sbjct: 238 QRGMQKLRSAFGLPDTATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDQ 297

Query: 304 KNGGDWMMEIYDQTHPSI 321
                 ++E+YD+ HP  
Sbjct: 298 SR----LLEVYDRAHPRA 311


>gi|222150032|ref|YP_002550989.1| site-specific tyrosine recombinase XerC [Agrobacterium vitis S4]
 gi|221737014|gb|ACM37977.1| site-specific tyrosine recombinase XerC [Agrobacterium vitis S4]
          Length = 322

 Score =  298 bits (763), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 154/317 (48%), Positives = 209/317 (65%), Gaps = 8/317 (2%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
            L  I + +L+ ERQNWL +L  +R L+  TL +YE DTRQFL FL  Y     +I  I+
Sbjct: 14  ELLLIAAPDLMAERQNWLASLSGQRRLADHTLTAYERDTRQFLGFLTGYFGGPPSIDDIK 73

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            L  +++RAF+S RR +  G RSL R L+G++S L+YL+++ +   +    +R+ K+  S
Sbjct: 74  ALRPSDLRAFLSSRRKEGAGARSLGRHLAGVRSLLRYLERKGLVNAAGAGAIRSPKQPKS 133

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP+ L+  QALT+V        +E  WI AR++A+  LLYGCGLRISEAL LTP +I+  
Sbjct: 134 LPKPLSAAQALTVVAAE--TQLNEEPWIAARDAAVFALLYGCGLRISEALDLTPADIVAT 191

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
            +TLR+ GKG+K R+VPLLP VR+A+  Y  LCP+ L      PLFRG RG  L  G+ Q
Sbjct: 192 TTTLRVTGKGNKTRLVPLLPIVRQAVESYQSLCPYHL--PATEPLFRGARGGKLQQGIIQ 249

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R +++LR  LGLP + T H LRHSFATHLLS GGDLR+IQ +LGH  LSTTQIYT V+S 
Sbjct: 250 REMQRLRSALGLPDTATPHALRHSFATHLLSGGGDLRTIQELLGHASLSTTQIYTGVDSA 309

Query: 305 NGGDWMMEIYDQTHPSI 321
                ++++YD+ HP  
Sbjct: 310 R----LLDVYDRAHPRA 322


>gi|86359460|ref|YP_471352.1| site-specific tyrosine recombinase XerC [Rhizobium etli CFN 42]
 gi|86283562|gb|ABC92625.1| tyrosine site-specific integrase/recombinase protein [Rhizobium
           etli CFN 42]
          Length = 311

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 151/318 (47%), Positives = 209/318 (65%), Gaps = 8/318 (2%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N L  I    L+ ER  WL+NL  ER LS+ TL +YE DTRQFL FL  +     T+  I
Sbjct: 2   NELLVIADPRLMAERAAWLENLARERRLSEHTLDAYERDTRQFLTFLTGHLAGPATLGDI 61

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           R+L   ++RAF++ RR Q  G RSL R+L+G++S L++L+K+ +   +    +R+ K+  
Sbjct: 62  RELRPADLRAFLAARRRQGSGARSLGRNLAGLRSLLRHLEKKGLVNAAGAGAIRSPKQPK 121

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           SLP+ L++ QA+T+V        H+  WI AR++A++ LLYGCGLRISEAL+L P ++  
Sbjct: 122 SLPKPLSDTQAITIV--SDEAQLHDEPWIAARDAAVMTLLYGCGLRISEALNLVPADLPK 179

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
             +TLRI GKG+K R+VPLLP V  A+ +Y  LCP+DL      PLFRG RG  L   + 
Sbjct: 180 GATTLRITGKGNKTRLVPLLPVVFDAVEKYRALCPYDLESGE--PLFRGARGGKLQAAII 237

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           QR +++LR  LGLP + T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ+YT V++
Sbjct: 238 QRAMQKLRGALGLPETATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDA 297

Query: 304 KNGGDWMMEIYDQTHPSI 321
                 ++E+YD+ HP  
Sbjct: 298 SR----LLEVYDRAHPRA 311


>gi|147677545|ref|YP_001211760.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
 gi|146273642|dbj|BAF59391.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
          Length = 295

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 92/309 (29%), Positives = 158/309 (51%), Gaps = 15/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + K  + ++ +L +ERGLS+ TL SY  D  +F+ F A     K  ++++ Q     + A
Sbjct: 1   MEKLLEEFIYHLAVERGLSENTLVSYRADLAKFISFCA-----KAGLKSVEQAGRDTVMA 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++ + +       ++ R L+ I++F ++     I       ++   K +  LPR L+ ++
Sbjct: 56  YLFQLQLDGRSTATISRHLASIRAFYRFAVGEGILPADPSSDLETPKPAQKLPRVLSVEE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+           +    R+ A+L LLY  G+R+SE +SL  +++  +   +R  GK
Sbjct: 116 VDLLM-----GQPGSGEPAGLRDKAMLELLYATGMRVSELVSLNLEHVNLENGFVRCLGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G + RI+P+     + + EY +   + L        LF    G+ L    F + I++  R
Sbjct: 171 GSRERIIPVGDVAVRWLKEYLERARYKLSKPGRTDALFVNQHGRRLTRQGFWKIIKKYAR 230

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +    T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT++      + + +
Sbjct: 231 KAKIKKVITPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHLT----RNRLRD 286

Query: 313 IYDQTHPSI 321
           +Y++THP  
Sbjct: 287 VYNRTHPRA 295


>gi|190893726|ref|YP_001980268.1| tyrosine site-specific integrase/recombinase [Rhizobium etli CIAT
           652]
 gi|190699005|gb|ACE93090.1| tyrosine site-specific integrase/recombinase protein [Rhizobium
           etli CIAT 652]
          Length = 311

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 150/318 (47%), Positives = 209/318 (65%), Gaps = 8/318 (2%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N L  I    L+ ER  WL+NL  ER LS+ TL +YE DTRQFL FL  +    +T+  I
Sbjct: 2   NELLVIADPRLMAERAAWLENLARERRLSEHTLDAYERDTRQFLTFLTGHLAGPVTLSDI 61

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           R+L   + RAF++ RR Q  G RSL R+L+G++S L++L+K+ +   +    +R+ K+  
Sbjct: 62  RELRPADFRAFLAARRKQGSGARSLGRNLAGLRSLLRHLEKKGLVNAAGAAAIRSPKQPK 121

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           SLP+ L++ QA+T+V N      H+  WI AR++A++ LLYGCGLRISEAL L P ++  
Sbjct: 122 SLPKPLSDTQAITVVSNE--AQLHDEPWIAARDAAVMTLLYGCGLRISEALDLVPADLPK 179

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
             +TLRI GKG+K R+VPLLP V +A+ +Y  LCP+ L  +   PLFRG RG  L   + 
Sbjct: 180 GATTLRITGKGNKTRLVPLLPVVFEAVEKYRALCPYHLENDA--PLFRGARGGKLQAAII 237

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           QR +++LR   GLP + T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ+YT V++
Sbjct: 238 QRAMQKLRSAFGLPETATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDA 297

Query: 304 KNGGDWMMEIYDQTHPSI 321
                 ++E+YD+ HP  
Sbjct: 298 SR----LLEVYDRAHPRA 311


>gi|51892959|ref|YP_075650.1| recombinase [Symbiobacterium thermophilum IAM 14863]
 gi|51856648|dbj|BAD40806.1| recombinase [Symbiobacterium thermophilum IAM 14863]
          Length = 294

 Score =  296 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 96/305 (31%), Positives = 146/305 (47%), Gaps = 16/305 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              ++  L +ERGL+  TL+SY  D RQ+  +L            +  +S + I  ++  
Sbjct: 5   IHEFINYLSVERGLATNTLESYGRDLRQYYQYLGE------DQVDLDAVSRSTIINYLMY 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            + Q     ++ R L+ +K+F ++L + K        N+ + K    LPR L   +   L
Sbjct: 59  LQKQGKATATIARRLAALKAFYQFLVREKRIKTDPTANLESPKLEKRLPRVLTVSEVERL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +          +     R+ A+L LLY  G+R+SE +SL  +++  +   +R  GKG K 
Sbjct: 119 L-----AQPDPSLPAGLRDRAMLELLYATGIRVSELVSLNIEDVNLETGYIRCTGKGSKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVPL     K + EY       L     +  LF    G  L    F + +++      +
Sbjct: 174 RIVPLGSLAIKWVKEYLQQGRPKLVKDREEAALFVNHHGHRLTRQGFWKIVKKYAEDARI 233

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT+V        + E+Y +
Sbjct: 234 DKEITPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHVT----KGRLKEVYAR 289

Query: 317 THPSI 321
           THP  
Sbjct: 290 THPRA 294


>gi|241206644|ref|YP_002977740.1| site-specific tyrosine recombinase XerC [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240860534|gb|ACS58201.1| integrase family protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 311

 Score =  296 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 147/318 (46%), Positives = 207/318 (65%), Gaps = 8/318 (2%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N L  I    L+ ER  WL+NL  ER LS+ TL +YE DTRQFL FL  +    +T+  I
Sbjct: 2   NELLVIADPRLMTERAAWLENLASERRLSEHTLDAYERDTRQFLTFLTGHLAGPVTLGDI 61

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           R+L   + RAF++ RR Q  G RSL R+L+G++S L++L+K+ +   +    +R+ K+  
Sbjct: 62  RELRSADFRAFLAARRKQGSGARSLGRNLAGLRSLLRHLEKKGLVNAAGAAAVRSPKQPK 121

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           SLP+ L++ QA+T+V +      H+  WI AR++A++ LLYGCGLRISEAL LTP ++  
Sbjct: 122 SLPKPLSDTQAITVVSDD--AQLHDEPWIAARDAAVMTLLYGCGLRISEALDLTPADLQK 179

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
             +TLRI GKG+K R+VPLL  +  A+ +Y  LCP+ L      PLFRG RG  L   + 
Sbjct: 180 GATTLRITGKGNKTRLVPLLSVIFDAVEKYRTLCPYHLEAGE--PLFRGARGGKLQAAII 237

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           QR ++++R   GLP + T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ+YT V++
Sbjct: 238 QRTMQKMRSAFGLPETATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDA 297

Query: 304 KNGGDWMMEIYDQTHPSI 321
                 ++E+YD+ HP  
Sbjct: 298 SR----LLEVYDRAHPRA 311


>gi|332799335|ref|YP_004460834.1| Tyrosine recombinase xerC [Tepidanaerobacter sp. Re1]
 gi|332697070|gb|AEE91527.1| Tyrosine recombinase xerC [Tepidanaerobacter sp. Re1]
          Length = 295

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 96/309 (31%), Positives = 156/309 (50%), Gaps = 15/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +    +N+LQ L +E+GL+K T+ +Y  D + ++ +L         I  I   + + I +
Sbjct: 1   MRDLLENFLQYLSVEKGLAKNTIDAYRRDLKSYIYYLKTKK-----ITNINSTNRSTIAS 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++   +       S+ R+ + IKSF ++L    I +E   +N+   K    LP+ L+ ++
Sbjct: 56  YLLLMQKNGKASSSISRACAAIKSFYQFLFMEHIISEDPTVNLDAPKLEQRLPKVLSVEE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+             +  R+ ++L LLY  G+R+SE +S++ +++  +   LR  GK
Sbjct: 116 IEKLLCQ-----PDMANPLGIRDRSMLELLYATGMRVSELISISVEDVNLEMGFLRCVGK 170

Query: 194 GDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K RIVP+     K +  Y  D     LN      LF   +G  +    F + I++  +
Sbjct: 171 GSKERIVPIGSIAVKYLKLYTLDARNKILNGKKSKILFLNRQGSAMTRQGFWKIIKKYSQ 230

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    T HT RHSFATHLL NG DLR +Q ILGH  +STTQIYT++      + + E
Sbjct: 231 QAGINKKITPHTFRHSFATHLLENGADLRVVQEILGHSDISTTQIYTHIT----RNKIKE 286

Query: 313 IYDQTHPSI 321
           +YD THP  
Sbjct: 287 VYDNTHPRA 295


>gi|188586285|ref|YP_001917830.1| tyrosine recombinase XerD subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350972|gb|ACB85242.1| tyrosine recombinase XerD subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 295

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 94/309 (30%), Positives = 166/309 (53%), Gaps = 15/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + K    ++  L +ERGLS+ TL SY  D + FL FL      +  +   +++  T I  
Sbjct: 1   MEKTVHEFIYYLNVERGLSENTLNSYLRDLKNFLEFL-----NQQGVTKWQEVKRTHIMK 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++   + +     ++ R+++ ++SF ++L +  + +E+   ++   K+   LP  L+ ++
Sbjct: 56  YLIFMKEKGKASATVTRNIASVRSFFQFLLQEGMISENPSTDLETPKQEKKLPEILSPQE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+     +    T +   R+ A+L +LY  G+R+SE +SL  +++  +   +  +GK
Sbjct: 116 VDKLL-----NQPDTTDFKGKRDKAMLEVLYATGMRVSELISLNVEHVDSNNGYILCKGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRR 252
           GDK RIVPL     K++ +Y       L  N+  P LF    GK L+   F + +++   
Sbjct: 171 GDKERIVPLGKMAIKSVSDYISKSRPQLRKNLSEPALFLNHHGKRLSRQGFWKILKKYAE 230

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            +G+    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT++  +     + +
Sbjct: 231 KIGIKQKITPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQIYTHLTKQR----LKD 286

Query: 313 IYDQTHPSI 321
           +Y ++HP  
Sbjct: 287 VYSKSHPRA 295


>gi|325293997|ref|YP_004279861.1| site-specific tyrosine recombinase XerC [Agrobacterium sp. H13-3]
 gi|325061850|gb|ADY65541.1| site-specific tyrosine recombinase XerC [Agrobacterium sp. H13-3]
          Length = 311

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 148/312 (47%), Positives = 200/312 (64%), Gaps = 8/312 (2%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            + +LL ERQ+WL  +  ER L+  T+++YE DTRQFL FL  Y  +  +I  I  L   
Sbjct: 8   ATPDLLNERQSWLAAIAGERRLADNTVEAYERDTRQFLTFLTGYIGKPASIADIADLRPV 67

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++RAF++ RR +  G RSL R L+G++SFL YL+K+++   +    MR+ K+  SLP+ L
Sbjct: 68  DLRAFLASRRKEGAGARSLGRHLAGLRSFLHYLQKKRLVNAAGATAMRSPKQPKSLPKPL 127

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            ++QAL +         +E  WI ARN+A+L LLYGCGLRISEAL L P +   D  +LR
Sbjct: 128 TDRQALKI--TTTEAQLNEEPWIAARNAAVLSLLYGCGLRISEALGLAPADFTPDARSLR 185

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           I GKG+K R+VPLL  V +A+  Y  LCP+ L  +   PLF G RG  L P + QR +++
Sbjct: 186 ITGKGNKTRMVPLLAVVTEAVEAYKKLCPYHLAADQ--PLFLGARGGKLQPAIIQREMQK 243

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           LR   GLP + T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQIYT V++      
Sbjct: 244 LRGAFGLPENATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQIYTGVDTAR---- 299

Query: 310 MMEIYDQTHPSI 321
           ++EIYD  HP  
Sbjct: 300 LLEIYDNAHPRA 311


>gi|169831443|ref|YP_001717425.1| tyrosine recombinase XerD [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169638287|gb|ACA59793.1| tyrosine recombinase XerD [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 295

 Score =  293 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 97/302 (32%), Positives = 156/302 (51%), Gaps = 15/302 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L +ERGLS+ TL +Y  D +QF  FLA        ++ +  L  + I A++  ++ 
Sbjct: 8   FLNHLHVERGLSENTLAAYRGDLQQFGAFLAAQ-----GVRDLNDLQASHITAYLLAQKR 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                 ++ R LS +++FLK+L    + T +      + K++  LPR L   +   L+  
Sbjct: 63  LGRRPATVARRLSAVRAFLKFLTAEGLVTANPAEYTGSPKQAQRLPRVLRVDEVDRLL-- 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                      +  R+ A++ +LY  GLR+SEA++L   ++      +R  GKG + R+V
Sbjct: 121 ---TAPDTANPMGLRDRALMEVLYASGLRVSEAVNLKVGDLDLRGGLVRCVGKGGRERVV 177

Query: 201 PLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+     + + EY     P  L       LF   RG+PL      + +++  R  G+   
Sbjct: 178 PVGGEAVRLVDEYLARSRPLLLKGRRTRFLFVNRRGQPLTRQTVWKLLKRYAREAGIQKE 237

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T HTLRHSFATHLL NG DLR++Q +LGH  + TTQIYT++ S+     +  +YD+THP
Sbjct: 238 ITPHTLRHSFATHLLENGADLRAVQEMLGHADIVTTQIYTHLTSR----GLRAVYDRTHP 293

Query: 320 SI 321
             
Sbjct: 294 RA 295


>gi|302389829|ref|YP_003825650.1| tyrosine recombinase XerD subunit [Thermosediminibacter oceani DSM
           16646]
 gi|302200457|gb|ADL08027.1| tyrosine recombinase XerD subunit [Thermosediminibacter oceani DSM
           16646]
          Length = 299

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 97/309 (31%), Positives = 159/309 (51%), Gaps = 15/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +  + +L+ L +E+GL++ T++SY  D + +L+FL         I  I+  S T I +
Sbjct: 5   MEELLKQFLEFLSVEKGLARNTIESYRRDLKSYLVFLRSQH-----IPDIKFTSKTTIIS 59

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++   +       S+ R+ + IKSF  +L + +   E   +N+   K    LPR L  ++
Sbjct: 60  YLLLMQKSGKASSSISRACAAIKSFYHFLVRERYIQEDPTVNLDTPKLEKKLPRVLTVEE 119

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++         +  +  R+  +L +LY  G+R+SE +SLT  ++  D   LR  GK
Sbjct: 120 VERLLEQ-----PDTSNPLGFRDKTMLEVLYATGIRVSELISLTVDDVNLDMGFLRCLGK 174

Query: 194 GDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K RIVP+       + +Y + +    L       LF    G+ L    F + I++  R
Sbjct: 175 GSKERIVPIGSFAVNYLRQYINDVRKKILKGKSTNILFVNHMGQALTRQGFWKIIKKYAR 234

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    T HTLRHSFATHL+ NG DLR++Q +LGH  +STTQ+YT++        + E
Sbjct: 235 KAGINKVITPHTLRHSFATHLIENGADLRAVQEMLGHADISTTQVYTHIT----RTRIKE 290

Query: 313 IYDQTHPSI 321
           +YD+THP  
Sbjct: 291 VYDKTHPRA 299


>gi|295695953|ref|YP_003589191.1| tyrosine recombinase XerD [Bacillus tusciae DSM 2912]
 gi|295411555|gb|ADG06047.1| tyrosine recombinase XerD [Bacillus tusciae DSM 2912]
          Length = 295

 Score =  293 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 151/305 (49%), Gaps = 15/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +++ L IE+GL+  TL SY  D   F  FL     ++       +     I A+++ 
Sbjct: 5   IERFIRYLAIEKGLAPSTLGSYRSDLEDFSDFL-----QRTGCGDWPETGRRHIVAYLAH 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            +       ++ R ++ ++SF ++L +  +        + + K    LPR LN ++   L
Sbjct: 60  LQKLGRAPATVSRHMASLRSFYQFLSREGLIEVDPTGQLDSPKADKRLPRVLNVEEVERL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L        +  R+ A+L +LY  G+R+SE +SL   ++  +   ++  GKG K 
Sbjct: 120 -----LAAPEGLTPMALRDRAMLEMLYATGVRVSELVSLNVTDVNLNMGYVKCYGKGSKE 174

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVPL  +  +A+  Y        L       LF   +GK L    F + +++  +  G+
Sbjct: 175 RIVPLGSAALEAVHAYLTRGRAGLLKNGDPGALFVNHQGKRLTRQGFWKILKKYAQTAGI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        + ++Y++
Sbjct: 235 QKAITPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTQTR----LKDVYER 290

Query: 317 THPSI 321
           THP  
Sbjct: 291 THPRA 295


>gi|296133169|ref|YP_003640416.1| tyrosine recombinase XerD [Thermincola sp. JR]
 gi|296031747|gb|ADG82515.1| tyrosine recombinase XerD [Thermincola potens JR]
          Length = 295

 Score =  291 bits (746), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 95/305 (31%), Positives = 159/305 (52%), Gaps = 15/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + ++  L +ERGL++ TL+SY  D  ++  FL+ +      I      + T + A++  
Sbjct: 5   IEEFIYYLTVERGLAENTLESYARDLERYSAFLSKH-----GITKFEATNKTNVMAYLLH 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            + Q     ++ R L+ +KSF +YL + K   +   +N+ + K    LPR L+ ++   L
Sbjct: 60  LQKQGKATSTISRHLASLKSFYQYLLREKHIEQDPTVNLESPKLQKKLPRVLSVEEVEIL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++   L+    ++     + A+L LLY  G+R+SE +SL   ++  +   +R  GKG K 
Sbjct: 120 LNQPRLNEPAGSR-----DKAMLELLYATGIRVSELISLDLDHVNLEMGYVRCFGKGSKE 174

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RI+P+    +K + EY        +    +  LF    G+ +    F + I++  R  G+
Sbjct: 175 RIIPIGSLAKKYVEEYLHRGRVRLIKSKGETALFVNHHGRRMTRQGFWKIIKKYAREAGI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               T HTLRHSFATHLL NG DLRS+Q +LGH  ++TTQIYT++        + E+Y +
Sbjct: 235 KKDITPHTLRHSFATHLLENGADLRSVQEMLGHADITTTQIYTHLT----RGRLREVYSK 290

Query: 317 THPSI 321
           THP  
Sbjct: 291 THPRA 295


>gi|57234018|ref|YP_181928.1| tyrosine recombinase XerD [Dehalococcoides ethenogenes 195]
 gi|57224466|gb|AAW39523.1| tyrosine recombinase XerD [Dehalococcoides ethenogenes 195]
          Length = 302

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 92/310 (29%), Positives = 155/310 (50%), Gaps = 9/310 (2%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + Q++L  L +E+G S+ T ++YE D RQ + F      +   I      +   + A
Sbjct: 1   MRDDIQSFLNYLMVEKGFSENTTEAYENDLRQMMTFADKEAAKSGKIPGWENFTRQTMLA 60

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++   + +     ++ R ++  KSF  ++       E+   N+   K    LP A++  Q
Sbjct: 61  YMLDLKERNYAITTVVRKMAAAKSFFNFMVAEGKLKENPTENISTPKVGKPLPDAISISQ 120

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++  +   S E K     + A+L LLY  G+R++E ++L   ++   +  +R  GK
Sbjct: 121 VRALLNQPVKSGSSEAKR----DKAMLELLYASGMRVTELVNLNVLDVDLKEGFVRCFGK 176

Query: 194 GDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K R++P+ P   ++I EY   + P  +    +  LF   RG  L      + ++   R
Sbjct: 177 GRKERMIPIYPQAAQSIQEYLTEIRPNLVRAETEKALFLNRRGDRLTRQGLWQILKGYAR 236

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL    T HTLRHSFATH+LS G DLRS+Q +LGH  +STTQIYT++ S++    +  
Sbjct: 237 EAGLDDVVTPHTLRHSFATHMLSGGADLRSVQELLGHANISTTQIYTHLTSEH----IKR 292

Query: 313 IYDQTHPSIT 322
            Y++ HP   
Sbjct: 293 SYEKAHPRAK 302


>gi|323340732|ref|ZP_08080984.1| integrase/recombinase XerD [Lactobacillus ruminis ATCC 25644]
 gi|323091855|gb|EFZ34475.1| integrase/recombinase XerD [Lactobacillus ruminis ATCC 25644]
          Length = 300

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 94/310 (30%), Positives = 164/310 (52%), Gaps = 15/310 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL +   ++L  L+ ERGLS+ T+ SY  D +QF+ +L+ +      I  +  +    I 
Sbjct: 5   ELQRILNDYLHYLKAERGLSENTVSSYGLDLQQFINYLSEHK-----ITDLNDVDKQVIV 59

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            ++     +   + S+ R ++ ++ F + +K+ +   +  ++++   K    LP  L+ +
Sbjct: 60  DYLDYLMNKGKANASIIRCVTSLRKFFQSMKQDEKIQDDPMISIETPKGEKHLPEVLSIE 119

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +       +LL+    ++ +  RN AIL L+Y  GLR+SE ++L  +++  D   ++  G
Sbjct: 120 EVE-----MLLNAPDTSQTLGIRNRAILELMYATGLRVSEVVNLKLEDLHLDVGIIQTMG 174

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLR 251
           KG K RIVP+       I  Y +    +L  N + P LF    G+ L      + ++   
Sbjct: 175 KGRKERIVPIGDEAIVWINNYLNDARPELCKNKRSPFLFVNFHGERLTRQGIWKNLKNEV 234

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +  G+  + T HTLRHSFATH+L NG DLR +Q +LGH  +STTQIYT+++ K     + 
Sbjct: 235 KKAGISKNVTPHTLRHSFATHILENGADLRIVQELLGHSDISTTQIYTHISKKR----LS 290

Query: 312 EIYDQTHPSI 321
           +IYD++HP  
Sbjct: 291 KIYDESHPHA 300


>gi|312110344|ref|YP_003988660.1| tyrosine recombinase XerD [Geobacillus sp. Y4.1MC1]
 gi|311215445|gb|ADP74049.1| tyrosine recombinase XerD [Geobacillus sp. Y4.1MC1]
          Length = 299

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 93/311 (29%), Positives = 159/311 (51%), Gaps = 16/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L  E +++L  L +ER L+K T+ SYE D +++  +L    +    IQ+   +S   I  
Sbjct: 2   LEHELKDFLHYLTVERNLAKNTIVSYERDLKKYAHYLRHVEQ----IQSWNDVSRLHIMQ 57

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+   + +    +++ R ++ I+SF ++L + KI  +   +++ + +   +LP+ L+ ++
Sbjct: 58  FLKFLKEKGSSPKTIARHIASIRSFHQFLLREKIADQDPSVHIESPQMERTLPKVLSLEE 117

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++            I  R+ A++ LLY  G+R+SE ++L   ++      +R  GK
Sbjct: 118 VEALLE-----APKTNTPIGIRDKAMIELLYATGMRVSELVNLNLSDVHLTMGFVRCYGK 172

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           G+K RIVP+      A+  Y +     L          LF    G  L    F + +++L
Sbjct: 173 GNKERIVPIGSMALDALKAYLETARPKLINPKKRATDALFLNHYGDRLTRQGFWKILKKL 232

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +   +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        +
Sbjct: 233 AKEANIEKELTPHTLRHSFATHLLENGADLRAVQELLGHADISTTQIYTHVTKTR----L 288

Query: 311 MEIYDQTHPSI 321
            ++Y Q HP  
Sbjct: 289 KDVYKQFHPRA 299


>gi|163761399|ref|ZP_02168473.1| site-specific tyrosine recombinase XerC [Hoeflea phototrophica
           DFL-43]
 gi|162281394|gb|EDQ31691.1| site-specific tyrosine recombinase XerC [Hoeflea phototrophica
           DFL-43]
          Length = 316

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 145/324 (44%), Positives = 202/324 (62%), Gaps = 11/324 (3%)

Query: 1   MEGNNLPE---IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK 57
           M+G  + +   I + +++ E+Q WL  L  ER L+  T ++YE D RQFL FL  +    
Sbjct: 1   MDGQTMEKPLVIAAPDVVAEQQRWLAQLTEERRLADKTAEAYERDLRQFLGFLTLHLGGP 60

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
             I  +  L   ++RAF+++RR +  G R+L R L+GI+SFL++L+++ +   +     R
Sbjct: 61  PKISDLADLRPLDLRAFMAERRREGAGARTLGRGLAGIRSFLRHLERKGLANAAGATATR 120

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             K+  SLP+ L+ + A  +VD  L  +  +  WI AR++A+L LLYGCGLRISEAL LT
Sbjct: 121 APKQPKSLPKPLSARDARRVVDADLQLS--DEPWIAARDAAVLTLLYGCGLRISEALGLT 178

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
             +I  D  +LRI GKG K RIVPLLP  R AI +Y +L PF    +   P+FRG RG P
Sbjct: 179 RNDIPRDGESLRITGKGGKTRIVPLLPIARSAISDYLELSPFRPAADA--PMFRGARGCP 236

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L P + Q+ +R LR  L LP + T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ+
Sbjct: 237 LQPAIVQKAMRALRSALDLPETATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQV 296

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSI 321
           YT V +      ++EIYD+ HP  
Sbjct: 297 YTGVETSR----LLEIYDRAHPRA 316


>gi|311030726|ref|ZP_07708816.1| site-specific tyrosine recombinase XerD [Bacillus sp. m3-13]
          Length = 296

 Score =  289 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 96/309 (31%), Positives = 165/309 (53%), Gaps = 14/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + ++++  L +E+GL+  T+ SYE D + +L++L+   E    I ++  +S + I  
Sbjct: 1   MQDQLKDFIHFLVVEKGLASNTVVSYERDLKSYLLYLSKVEE----ISSLEAVSRSTIIQ 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+          +++ R ++ I+SF ++L + K+TT+   +++   K+   LP+ ++ ++
Sbjct: 57  FLKFLTENGKSSKTIARHIASIRSFHQFLLREKVTTQDPTVHIDRPKQEQKLPQVMSVEE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D     +   +K    R+ A+L LLY  G+R+SE +SL   ++      +R  GK
Sbjct: 117 VQALLD-----SPDTSKVFGMRDKAMLELLYATGMRVSELISLNLSDVHLTMGFVRCIGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G+K RI+PL    + AI  Y +      L       LF  + G  L    F + +++L +
Sbjct: 172 GNKERIIPLGTMAQNAITNYIEESRSQLLKKKTTDALFVNLYGNRLTRQGFWKILKKLTK 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        M +
Sbjct: 232 EAGIEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----MKD 287

Query: 313 IYDQTHPSI 321
           +Y   HP  
Sbjct: 288 VYSMFHPRA 296


>gi|295399051|ref|ZP_06809033.1| tyrosine recombinase XerD [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294978517|gb|EFG54113.1| tyrosine recombinase XerD [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 299

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 93/311 (29%), Positives = 159/311 (51%), Gaps = 16/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L  E +++L  L +ER L+K T+ SYE D +++  +L    +    IQ+   +S   I  
Sbjct: 2   LEHELKDFLHYLTVERNLAKNTIVSYERDLKKYAHYLRHVEQ----IQSWNDVSRLHIMQ 57

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+   + +    +++ R ++ I+SF ++L + KI  +   +++ + +   +LP+ L+ ++
Sbjct: 58  FLKFLKEKGSSPKTIARHIASIRSFHQFLLREKIADQDPSVHIESPQMERTLPKVLSLEE 117

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++            I  R+ A++ LLY  G+R+SE ++L   ++      +R  GK
Sbjct: 118 VEALLE-----APKTNTPIGIRDKAMIELLYATGMRVSELVNLNLSDVHLTMGFVRCYGK 172

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           G+K RIVP+      A+  Y +     L          LF    G  L    F + +++L
Sbjct: 173 GNKERIVPVGSMALDALKAYLETARPKLINPKKRTTDALFLNHYGDRLTRQGFWKILKKL 232

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +   +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        +
Sbjct: 233 AKEANIEKELTPHTLRHSFATHLLENGADLRAVQELLGHADISTTQIYTHVTKTR----L 288

Query: 311 MEIYDQTHPSI 321
            ++Y Q HP  
Sbjct: 289 KDVYKQFHPRA 299


>gi|270308385|ref|YP_003330443.1| integrase/recombinase [Dehalococcoides sp. VS]
 gi|270154277|gb|ACZ62115.1| integrase/recombinase [Dehalococcoides sp. VS]
          Length = 302

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 93/310 (30%), Positives = 155/310 (50%), Gaps = 9/310 (2%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + Q++L  L +E+G S+ T ++YE D RQ + F      +   I      +   + A
Sbjct: 1   MRDDIQSFLNYLMVEKGFSENTTEAYENDLRQMMTFADKEAAKFGKIPGWENFTRQTMLA 60

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++   + +     ++ R ++  KSF  ++       E+   N+   K    LP A++  Q
Sbjct: 61  YMLDLKERNYAITTVVRKMAAAKSFFNFMVAEGKLKENPTENISTPKVGKPLPDAISISQ 120

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++  +   S E K     + A+L LLY  G+R++E ++L   +I   +  +R  GK
Sbjct: 121 VRALLNQPVKSGSSEAKR----DKAMLELLYASGMRVTELVNLNVLDIDLKEGFVRCFGK 176

Query: 194 GDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K R++P+ P   ++I EY   + P  +    +  LF   RG  L      + ++   R
Sbjct: 177 GRKERMIPIYPQAAQSIQEYLTEIRPNLVRAETEKALFLNRRGDRLTRQGLWQILKGYAR 236

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL    T HTLRHSFATH+LS G DLRS+Q +LGH  +STTQIYT++ S++    +  
Sbjct: 237 EAGLDDVVTPHTLRHSFATHMLSGGADLRSVQELLGHANISTTQIYTHLTSEH----IRR 292

Query: 313 IYDQTHPSIT 322
            Y++ HP   
Sbjct: 293 SYEKAHPRAK 302


>gi|116254158|ref|YP_769996.1| site-specific tyrosine recombinase XerC [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115258806|emb|CAK09912.1| putative tyrosine recombinase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 299

 Score =  288 bits (737), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 144/307 (46%), Positives = 202/307 (65%), Gaps = 8/307 (2%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           + ER  WL+NL  ER LS+ TL +YE DTRQFL FL  +     T++ IR+L   + RAF
Sbjct: 1   MAERAAWLENLARERRLSEHTLDAYERDTRQFLTFLTGHLAGPATLRDIRELRPADFRAF 60

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++ RR Q  G RSL R+L+G++S L++L+K+ +   +    +R+ K+  SLP+ L++ QA
Sbjct: 61  LAARRKQGSGARSLGRNLAGLRSLLRHLEKKGLVNAAGAAAVRSPKQPKSLPKPLSDTQA 120

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           +T+V        H+  WI AR++A++ LLYGCGLRISEAL LTP ++    +TLRI GKG
Sbjct: 121 ITVV--SDEAQLHDEPWIAARDAAVMTLLYGCGLRISEALDLTPADLQKGATTLRITGKG 178

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +K R+VPLL  V  A+ +Y  LCP+ L      PLFRG RG  L   + QR ++++R   
Sbjct: 179 NKTRLVPLLSVVFDAVEKYRALCPYHLESGE--PLFRGARGGKLQAAIIQRTMQKMRSAF 236

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           GLP + T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ+YT V++      ++E+Y
Sbjct: 237 GLPETATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASR----LLEVY 292

Query: 315 DQTHPSI 321
           D+ HP  
Sbjct: 293 DRAHPRA 299


>gi|297616683|ref|YP_003701842.1| tyrosine recombinase XerD [Syntrophothermus lipocalidus DSM 12680]
 gi|297144520|gb|ADI01277.1| tyrosine recombinase XerD [Syntrophothermus lipocalidus DSM 12680]
          Length = 296

 Score =  288 bits (737), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 96/302 (31%), Positives = 155/302 (51%), Gaps = 14/302 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  L  ERGLS+ TLQ+Y  D   FL++     E++  I  I Q+   ++  F+     
Sbjct: 8   FIGYLNFERGLSENTLQAYRRDIGSFLVYC----EKERGISDISQVKRHDVVDFLGWLLK 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                 SL R+LS +KSF ++++K +    +   N+ + +    LPR L+  +   L++ 
Sbjct: 64  GGRAYSSLARTLSALKSFFRFMQKERYILTNPTDNIESPQVVRRLPRVLSVSEVEKLLEQ 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                 +       R+ A+L L+Y  GLR+SE L+L  ++I      +R  GKG K RIV
Sbjct: 124 -----PNPVTVRGIRDRAMLELMYATGLRVSELLALQLEDINLVAGFVRCLGKGRKERIV 178

Query: 201 PLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+  +    +  Y        +  +++  LF   +GK L+   F + +    R  G+   
Sbjct: 179 PVNKTSVFWVERYISRSRNHLVKSSLERTLFVNAKGKKLSRQGFWKILNGYARQAGIEKE 238

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT++        + E+Y+++HP
Sbjct: 239 IHPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHLTKSR----LREVYEKSHP 294

Query: 320 SI 321
             
Sbjct: 295 RA 296


>gi|15889883|ref|NP_355564.1| site-specific tyrosine recombinase XerC [Agrobacterium tumefaciens
           str. C58]
 gi|34222928|sp|Q8UC70|XERC_AGRT5 RecName: Full=Tyrosine recombinase xerC
 gi|15157830|gb|AAK88349.1| site-specific recombinase [Agrobacterium tumefaciens str. C58]
          Length = 315

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 146/312 (46%), Positives = 195/312 (62%), Gaps = 8/312 (2%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
              +LL ERQ+WL  L  ER L+  T+++YE DTRQFL FL  Y      I+ I  L   
Sbjct: 12  AEPDLLNERQSWLATLAGERRLADNTVEAYERDTRQFLRFLTGYIGRPAAIRDIADLRPV 71

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++RAF++ RR +  G RSL R L+G++S L +L+K+ +   +    MR  K+  SLP+ L
Sbjct: 72  DLRAFLANRRKEGAGARSLGRHLAGLRSLLHHLQKKGLVNAAGATAMRAPKQPKSLPKPL 131

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            ++QAL +         +E  WI ARN+A+L LLYGCGLRISEAL LTP +      +LR
Sbjct: 132 TDRQALKI--TTAEAQLNEEPWIAARNAAVLSLLYGCGLRISEALGLTPADFPPGTRSLR 189

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           I GKG+K RIVPLL  V +A+  Y  LCP+ L  +   P+F G RG  L P + QR +++
Sbjct: 190 ITGKGNKTRIVPLLAVVTEAVDTYRKLCPYALAADE--PMFLGARGGKLQPAIIQREMQK 247

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           LR   GLP + T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ+YT V++      
Sbjct: 248 LRGAFGLPENATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDTAR---- 303

Query: 310 MMEIYDQTHPSI 321
           ++EIYD  HP  
Sbjct: 304 LLEIYDNAHPRA 315


>gi|239827607|ref|YP_002950231.1| site-specific tyrosine recombinase XerD [Geobacillus sp. WCH70]
 gi|239807900|gb|ACS24965.1| tyrosine recombinase XerD [Geobacillus sp. WCH70]
          Length = 299

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 91/308 (29%), Positives = 158/308 (51%), Gaps = 16/308 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E +++L  L +ER L+K T+ SYE D +++  +L    +    IQ+   ++   I  F+ 
Sbjct: 5   ELKDFLHYLTVERNLAKNTIISYERDLKKYAHYLRHVEQ----IQSWNDVTRLHIMQFLK 60

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             + +    +++ R ++ I+SF ++L + K+  +   +++ + +   +LP+ L+ ++   
Sbjct: 61  FLKEKGNSPKTIARHIASIRSFHQFLLREKVAEQDPSVHIESPQMERTLPKVLSLEEVEA 120

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L++            I  R+ A+L LLY  G+R+SE ++L   ++      +R  GKG K
Sbjct: 121 LLE-----APKTNTPIGVRDKAMLELLYATGMRVSELVNLNLSDVHLTMGFVRCYGKGKK 175

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            RIVP+      A+  Y +     L          LF    G+ L    F + +++L + 
Sbjct: 176 ERIVPVGSMALNALKVYLETARPKLINSKKRTTDALFLNHHGERLTRQGFWKILKKLAKE 235

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        + ++
Sbjct: 236 ANIEKELTPHTLRHSFATHLLENGADLRAVQELLGHADISTTQIYTHVTKTR----LKDV 291

Query: 314 YDQTHPSI 321
           Y Q HP  
Sbjct: 292 YKQYHPRA 299


>gi|73748904|ref|YP_308143.1| tyrosine recombinase XerD [Dehalococcoides sp. CBDB1]
 gi|147669665|ref|YP_001214483.1| tyrosine recombinase XerD subunit [Dehalococcoides sp. BAV1]
 gi|73660620|emb|CAI83227.1| tyrosine recombinase XerD [Dehalococcoides sp. CBDB1]
 gi|146270613|gb|ABQ17605.1| tyrosine recombinase XerD subunit [Dehalococcoides sp. BAV1]
          Length = 302

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 91/310 (29%), Positives = 155/310 (50%), Gaps = 9/310 (2%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + Q++L  L +E+G S+ T ++YE D RQ   F      +   I      +   + A
Sbjct: 1   MRDDIQSFLNYLMVEKGFSENTSEAYENDLRQMTTFADKEAAKSGKIPGWDNFTRQTMLA 60

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++   + +     ++ R ++  KSF  ++       E+   N+   K    LP A++  Q
Sbjct: 61  YMLDLKERNYAITTVVRKMAAAKSFFNFMVAEGKLKENPTENISTPKVGKPLPDAISISQ 120

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++  +   S E K     + A+L LLY  G+R++E ++L   ++   +  +R  GK
Sbjct: 121 VRALLNQPIKSGSSEAKR----DKAMLELLYASGMRVTELVNLNMLDVDLKEGFVRCFGK 176

Query: 194 GDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K R++P+ P   +++ EY + + P  +    +  LF   RG  L      + ++   R
Sbjct: 177 GRKERMIPIYPQAAQSVQEYLNEIRPNLVRAEAEKALFLNRRGDRLTRQGLWQILKAYAR 236

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL    T HTLRHSFATH+LS G DLRS+Q +LGH  +STTQIYT++ S++    +  
Sbjct: 237 EAGLDDVVTPHTLRHSFATHMLSGGADLRSVQELLGHANISTTQIYTHLTSEH----IRR 292

Query: 313 IYDQTHPSIT 322
            Y++ HP   
Sbjct: 293 SYEKAHPRAK 302


>gi|289432900|ref|YP_003462773.1| tyrosine recombinase XerD [Dehalococcoides sp. GT]
 gi|288946620|gb|ADC74317.1| tyrosine recombinase XerD [Dehalococcoides sp. GT]
          Length = 302

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 91/310 (29%), Positives = 155/310 (50%), Gaps = 9/310 (2%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + Q++L  L +E+G S+ T ++YE D RQ   F      +   I      +   + A
Sbjct: 1   MRDDIQSFLNYLMVEKGFSENTSEAYENDLRQMTTFADKEAAKSGKIPGWDNFTRQTMLA 60

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++   + +     ++ R ++  KSF  ++       E+   N+   K    LP A++  Q
Sbjct: 61  YMLDLKERNYAITTVVRKMAAAKSFFNFMVAEGKLKENPTENISTPKVGKPLPDAISISQ 120

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++  +   S E K     + A+L LLY  G+R++E ++L   ++   +  +R  GK
Sbjct: 121 VRALLNQPVKSGSSEAKR----DKAMLELLYASGMRVTELVNLNMLDVDLKEGFVRCFGK 176

Query: 194 GDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K R++P+ P   +++ EY + + P  +    +  LF   RG  L      + ++   R
Sbjct: 177 GRKERMIPIYPQAAQSVQEYLNEIRPNLVRAEAEKALFLNRRGDRLTRQGLWQILKAYAR 236

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL    T HTLRHSFATH+LS G DLRS+Q +LGH  +STTQIYT++ S++    +  
Sbjct: 237 EAGLDDVVTPHTLRHSFATHMLSGGADLRSVQELLGHANISTTQIYTHLTSEH----IRR 292

Query: 313 IYDQTHPSIT 322
            Y++ HP   
Sbjct: 293 SYEKAHPRAK 302


>gi|77919114|ref|YP_356929.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380]
 gi|77545197|gb|ABA88759.1| tyrosine recombinase XerD subunit [Pelobacter carbinolicus DSM
           2380]
          Length = 295

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 102/301 (33%), Positives = 154/301 (51%), Gaps = 15/301 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +E+GLS  TL +Y  D  ++L FL+        +  + Q+S   + AF+S  + 
Sbjct: 8   FLNYLVVEKGLSANTLDAYGRDLARYLEFLSVK-----GVTGLEQVSPPMVVAFLSALKE 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  RS  R L  ++ F ++L    + T +    +   K    LP+ L   +  +L+  
Sbjct: 63  RGLSARSRARKLVSLRMFHRFLLAENLATTNPAAQVAAPKSFAKLPQILTPDEVESLL-- 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                   T   D R+ A+L +LY  GLR+SE + LT Q++  D   L   GK  K RIV
Sbjct: 121 ---SAPGNTTCFDLRDKAMLEILYATGLRVSELVGLTLQDLQLDVGYLTAFGKRAKQRIV 177

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           PL  + R+A+LEY      +L   +    LF    G  L    F + +++     G+  +
Sbjct: 178 PLGDAAREAVLEYLSHGRGELAGEVGSGFLFLNRSGNGLTRQGFWKMMKRRAMEAGINKN 237

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T HTLRHSFATHLL NG DLR++Q++LGH  +STTQIYT+V  +     M  I+ Q HP
Sbjct: 238 ITPHTLRHSFATHLLDNGADLRAVQAMLGHADISTTQIYTHVTRER----MKVIHQQHHP 293

Query: 320 S 320
            
Sbjct: 294 R 294


>gi|149915599|ref|ZP_01904125.1| tyrosine recombinase [Roseobacter sp. AzwK-3b]
 gi|149810491|gb|EDM70334.1| tyrosine recombinase [Roseobacter sp. AzwK-3b]
          Length = 304

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 132/312 (42%), Positives = 188/312 (60%), Gaps = 9/312 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++S       Q WL+  +  +G +  TL++Y  D   FL F+  +  E   I  + ++  
Sbjct: 1   MISPAARDALQGWLETQKALKGAADNTLEAYGRDVAGFLTFMTGHKGEMQGIAPLTRIGV 60

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           T++RA+++  R + +G RSL R LS +KSF ++L +R+    + +L+ R  K    LPR 
Sbjct: 61  TDMRAWMAFIRGEDVGPRSLARKLSAVKSFYRWLAEREGFDATAVLSARAPKFQRKLPRP 120

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L  + A  L+D + L ++  T W+ AR+ A++ LLYGCGLRISEAL LT  ++   ++ L
Sbjct: 121 LAPEAAQDLIDTLELQSA--TPWVAARDQAVVTLLYGCGLRISEALGLTGGDLPMGEA-L 177

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKG K RIVP++   R A+  Y  LCPFDL      PLFRG+RG PLNP   Q+   
Sbjct: 178 RITGKGGKERIVPVIAPARDAVAHYARLCPFDL--RPGTPLFRGMRGGPLNPRAVQKVTE 235

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
             R  LGLP + T H +RHSFATHLL+ GGDLR+IQ +LGH  LSTTQ YT V++     
Sbjct: 236 AARTQLGLPATATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTAVDTSR--- 292

Query: 309 WMMEIYDQTHPS 320
            +ME+Y + HP 
Sbjct: 293 -LMEVYRKAHPK 303


>gi|254470878|ref|ZP_05084281.1| tyrosine site-specific integrase/recombinase protein [Pseudovibrio
           sp. JE062]
 gi|211960020|gb|EEA95217.1| tyrosine site-specific integrase/recombinase protein [Pseudovibrio
           sp. JE062]
          Length = 319

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 141/320 (44%), Positives = 203/320 (63%), Gaps = 9/320 (2%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
            G +L  I   ++    ++W+ +L  ER L++ TL++YE DTRQFL F+  Y  E + ++
Sbjct: 7   SGEDLLIICKPDVTAAIEDWIDHLGSERRLAERTLEAYERDTRQFLRFMTSYEGEPVALR 66

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            +  L   + R F++ RR      R+L R L+GI+SFL +L++R     +    +R  + 
Sbjct: 67  HLESLKPKDFRGFLATRRKDGAQTRTLARGLAGIRSFLSFLEERGEVNAAGAAAVRTPRL 126

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ-N 180
             SLP+ +  ++A  +V + L     +T W++ARN+A+  LLYGCGLRISEALSLTP   
Sbjct: 127 PRSLPKPIPVEEAKAIVSSDL--AFEDTPWVEARNAAVFTLLYGCGLRISEALSLTPATA 184

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
             +   +L+++GKG+K R+VP+LP V +AI  Y D CP+DL+ N   PLFRG+RG  LN 
Sbjct: 185 PKEGDKSLKVRGKGNKERLVPVLPVVVEAIEAYKDQCPYDLSANS--PLFRGVRGGALNA 242

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            + Q  ++++R  LGLP + T H LRHSFATHLLS GGDLRSIQ +LGH  LSTTQIYT 
Sbjct: 243 RMIQLAMQKIRSALGLPDTATPHALRHSFATHLLSEGGDLRSIQELLGHASLSTTQIYTE 302

Query: 301 VNSKNGGDWMMEIYDQTHPS 320
           VNS      +++ YD+ HP 
Sbjct: 303 VNSAQ----LLDAYDKAHPR 318


>gi|300361568|ref|ZP_07057745.1| tyrosine recombinase XerD [Lactobacillus gasseri JV-V03]
 gi|300354187|gb|EFJ70058.1| tyrosine recombinase XerD [Lactobacillus gasseri JV-V03]
          Length = 302

 Score =  286 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 91/311 (29%), Positives = 159/311 (51%), Gaps = 18/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +    +++L+  ++ERGLS  T+ SY  D  ++L +L    E         ++ Y  + A
Sbjct: 7   MKDNLEDYLRFSQVERGLSPNTIISYRTDLEEYLDYLQDQNETSW------EVDYLVVDA 60

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F++ ++ +     S+ R +S ++ F ++L ++ I     ++ + + K    LP AL+E++
Sbjct: 61  FLAAQKDKGKATTSISRMISSLRKFYQWLLRQDIIERDPLIKIDSPKSERRLPTALSEEE 120

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+             +  R+ A+L LLY  G+R+SE ++L   +I  D   +R+ GK
Sbjct: 121 VDKLL-----AAPDTNTPLGIRDRAMLELLYATGMRVSELINLRTGDIHSDLKIIRVLGK 175

Query: 194 GDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           G K R+VP+       + +Y           +      +F    G  L      + I++ 
Sbjct: 176 GSKERLVPITEVALSWLEKYQKDVRDAQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKY 235

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            + +G+  + T HTLRH+FATHLL NG DLR +Q ILGH  ++TTQIYTN+  K+    +
Sbjct: 236 CQLVGITKNVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKH----I 291

Query: 311 MEIYDQTHPSI 321
           +E+Y+Q HP  
Sbjct: 292 LEVYNQAHPRA 302


>gi|83590344|ref|YP_430353.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC
           39073]
 gi|83573258|gb|ABC19810.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC
           39073]
          Length = 295

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 96/309 (31%), Positives = 154/309 (49%), Gaps = 15/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +    +L  L +ERGL++ TL SY  D +QFL++L     E   +++ R ++   + A
Sbjct: 1   MHELVDQFLYYLVVERGLAENTLASYNSDLQQFLLYL-----EGAGVKSPRDVTRGLLVA 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++ K +       ++ + L+ +KSF  +L + ++       ++ + ++S  LP+ L   +
Sbjct: 56  YLVKMQQDGRSPATISQHLAALKSFYHFLLRERLVESDPTADLESPRQSKKLPQVLTVAE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+     +          R+ A+L LLY  GLR+SE +SL    +  +   +R  GK
Sbjct: 116 VEKLL-----NQPRTDTPAGLRDKAMLELLYATGLRVSELVSLNVDQVNLEGEFVRCLGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRR 252
           G K R+VP+       +  Y +     L      P LF    G+ L+     + ++   R
Sbjct: 171 GSKERVVPMGQVACFYVRTYIENGRGKLIKRATEPALFVNHHGRRLSRQGCWKILKGYVR 230

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L    T HTLRHSFATHLL NG DLRS+Q +LGH  + TTQIYT++  K     + E
Sbjct: 231 AANLKKDITPHTLRHSFATHLLENGADLRSVQELLGHADIGTTQIYTHLTRK----KIRE 286

Query: 313 IYDQTHPSI 321
           IYD THP  
Sbjct: 287 IYDHTHPRA 295


>gi|77359472|ref|YP_339047.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874383|emb|CAI85604.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 308

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 90/304 (29%), Positives = 159/304 (52%), Gaps = 17/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L +E+G+S+ TL +Y  D  +F  FL          + +  ++  ++ ++++ 
Sbjct: 22  LETFLDCLYLEQGVSENTLSAYRSDLDKFCQFLKG--------KNLMTVTGLDVESYLAH 73

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R    +  RS  RS+S +K F +Y  + K+ ++S +LN+   K   SLP+ L+E +   L
Sbjct: 74  RVDLGLKPRSTARSISALKRFYQYFVREKLISDSPMLNIAQPKAGQSLPKTLSEAEVEAL 133

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +        +  + +  R+ A+L LLY  GLR+SE + L  + I   Q+ + ++GKG+K 
Sbjct: 134 L-----SAPNTDEPMGLRDKAMLELLYATGLRVSELVGLRIEQINLRQAVVFVKGKGNKE 188

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VPL       + ++  +    +  +    +F   RG  +    F   ++       + 
Sbjct: 189 RLVPLGEEAMYWLEQFLKVGRAQMIKHATDFVFPSKRGVGMTRQTFWHRVKHYAILASIE 248

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  ++ Q 
Sbjct: 249 SSLSPHTLRHAFATHLLNHGADLRVVQMMLGHSDLSTTQIYTHVANER----LKSVHAQH 304

Query: 318 HPSI 321
           HP  
Sbjct: 305 HPRA 308


>gi|192360546|ref|YP_001981926.1| tyrosine recombinase XerD [Cellvibrio japonicus Ueda107]
 gi|190686711|gb|ACE84389.1| tyrosine recombinase XerD [Cellvibrio japonicus Ueda107]
          Length = 299

 Score =  284 bits (728), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 97/301 (32%), Positives = 152/301 (50%), Gaps = 15/301 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +E+GLS+ T +SY  D  QF  +LA           +  ++ TE++A+++ R  
Sbjct: 12  FLDQLWMEKGLSENTQESYRRDLEQFAGWLAAGQG-----PDLLAVTATEVQAYLAWRHQ 66

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q +  RS  R LS ++ F +   +     ++ +  + N K S SLP++L+E     L+  
Sbjct: 67  QHLSSRSTARFLSCLRGFYRLQIREGHLHDNPLALVENPKLSRSLPKSLSESDVENLL-- 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                      +  R+  +L +LY CGLR+SE + LT   +   Q+ +R+ GKG K R+V
Sbjct: 125 ---SAPDVDDPVGLRDKTMLEVLYACGLRVSELVGLTMSQVNLRQNVVRVMGKGSKERLV 181

Query: 201 PLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+       +  Y     P  LN      +F   RG+P+    F   I+   +  G+   
Sbjct: 182 PMGEEAAAWLQRYLREARPVLLNNFPDEVVFPSSRGQPMTRQTFWYRIKHWAQVAGINKP 241

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        M   + + HP
Sbjct: 242 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHV----ARLRMKHQHAEHHP 297

Query: 320 S 320
            
Sbjct: 298 R 298


>gi|89068699|ref|ZP_01156085.1| tyrosine recombinase [Oceanicola granulosus HTCC2516]
 gi|89045662|gb|EAR51724.1| tyrosine recombinase [Oceanicola granulosus HTCC2516]
          Length = 307

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 127/313 (40%), Positives = 183/313 (58%), Gaps = 9/313 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++S  L    + WL +    RG S+ T+ +Y  D   FL F+A +   +  +  + ++  
Sbjct: 4   LISPALTDAAEAWLAHARALRGASEKTINAYRTDVLGFLAFMAEHHGGQQGLAPLARVGV 63

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           +++RA+++  R + +  RSL R+LS +K F +++ +R+    + +L+ R+ K    LPR 
Sbjct: 64  SDMRAWMAHERGRGVSARSLARALSAVKGFYRWIAEREGFEPTAVLSTRSPKFQKKLPRP 123

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L    A  ++D V L       W+ AR+ A++ LLYGCGLRISEAL LT   +   +  +
Sbjct: 124 LAVDAAQAMIDRVELQA--REGWVAARDVAVVTLLYGCGLRISEALGLTGAAVPLPE-VV 180

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKG K R+VP++   R A+  Y  LCP  L     LPLFRG+RG  LNP   Q+ + 
Sbjct: 181 RIVGKGGKERVVPVIAPARDAVDAYARLCPHPLE--PHLPLFRGVRGGALNPRAIQKVME 238

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           Q R  LGLP + T H LRHSFATHLL  GGDLRSIQ +LGH  LSTTQ YT V++     
Sbjct: 239 QARLQLGLPATATPHALRHSFATHLLGAGGDLRSIQELLGHASLSTTQAYTAVDTAR--- 295

Query: 309 WMMEIYDQTHPSI 321
            +ME+YD+ HP  
Sbjct: 296 -LMEVYDKAHPRA 307


>gi|116629539|ref|YP_814711.1| integrase [Lactobacillus gasseri ATCC 33323]
 gi|238852689|ref|ZP_04643099.1| tyrosine recombinase XerD [Lactobacillus gasseri 202-4]
 gi|311110818|ref|ZP_07712215.1| tyrosine recombinase XerD [Lactobacillus gasseri MV-22]
 gi|116095121|gb|ABJ60273.1| tyrosine recombinase XerD subunit [Lactobacillus gasseri ATCC
           33323]
 gi|238834835|gb|EEQ27062.1| tyrosine recombinase XerD [Lactobacillus gasseri 202-4]
 gi|311065972|gb|EFQ46312.1| tyrosine recombinase XerD [Lactobacillus gasseri MV-22]
          Length = 302

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 91/311 (29%), Positives = 159/311 (51%), Gaps = 18/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +    +++L+  ++ERGLS  T+ SY  D  ++L +L    E         ++ Y  + A
Sbjct: 7   MKDNLEDYLRFSQVERGLSPNTIISYRTDLEEYLDYLQDQNETSW------EVDYLVVDA 60

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F++ ++ +     S+ R +S ++ F ++L ++ I     ++ + + K    LP AL+E++
Sbjct: 61  FLATQKDKGKATTSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEE 120

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L     L        +  R+ A+L +LY  G+R+SE ++L   +I  D   +R+ GK
Sbjct: 121 VDKL-----LAAPDTNTPLGIRDRAMLEVLYATGMRVSELINLRTGDIHADLKIIRVLGK 175

Query: 194 GDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           G K R+VP+       + +Y           +      +F    G  L      + I++ 
Sbjct: 176 GSKERLVPITEVALSWLEKYQTDVRDAQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKY 235

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            + +G+  + T HTLRH+FATHLL NG DLR +Q ILGH  ++TTQIYTN+  K+    +
Sbjct: 236 CQLIGITKNVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKH----I 291

Query: 311 MEIYDQTHPSI 321
           +E+Y+Q HP  
Sbjct: 292 LEVYNQAHPRA 302


>gi|282852078|ref|ZP_06261436.1| tyrosine recombinase XerD [Lactobacillus gasseri 224-1]
 gi|282556838|gb|EFB62442.1| tyrosine recombinase XerD [Lactobacillus gasseri 224-1]
          Length = 296

 Score =  284 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 91/311 (29%), Positives = 159/311 (51%), Gaps = 18/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +    +++L+  ++ERGLS  T+ SY  D  ++L +L    E         ++ Y  + A
Sbjct: 1   MKDNLEDYLRFSQVERGLSPNTIISYRTDLEEYLDYLQDQNETSW------EVDYLVVDA 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F++ ++ +     S+ R +S ++ F ++L ++ I     ++ + + K    LP AL+E++
Sbjct: 55  FLATQKDKGKATTSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEE 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L     L        +  R+ A+L +LY  G+R+SE ++L   +I  D   +R+ GK
Sbjct: 115 VDKL-----LAAPDTNTPLGIRDRAMLEVLYATGMRVSELINLRTGDIHADLKIIRVLGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           G K R+VP+       + +Y           +      +F    G  L      + I++ 
Sbjct: 170 GSKERLVPITEVALSWLEKYQTDVRDAQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKY 229

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            + +G+  + T HTLRH+FATHLL NG DLR +Q ILGH  ++TTQIYTN+  K+    +
Sbjct: 230 CQLIGITKNVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKH----I 285

Query: 311 MEIYDQTHPSI 321
           +E+Y+Q HP  
Sbjct: 286 LEVYNQAHPRA 296


>gi|228992829|ref|ZP_04152754.1| Tyrosine recombinase xerD [Bacillus pseudomycoides DSM 12442]
 gi|228998874|ref|ZP_04158459.1| Tyrosine recombinase xerD [Bacillus mycoides Rock3-17]
 gi|228760890|gb|EEM09851.1| Tyrosine recombinase xerD [Bacillus mycoides Rock3-17]
 gi|228766878|gb|EEM15516.1| Tyrosine recombinase xerD [Bacillus pseudomycoides DSM 12442]
          Length = 296

 Score =  284 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 92/309 (29%), Positives = 162/309 (52%), Gaps = 14/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + ++++  + +E+GL+K T+ SYE D + ++ +L    +    I+T  +++   I  
Sbjct: 1   MEDQLKDFIHYMIVEKGLAKNTVVSYERDLKSYVKYLQHVEQ----IKTFHEVTRIHIVN 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+   +      ++L R ++ I+SF ++L + ++      +++   +    LP+ L+  +
Sbjct: 57  FLQYLKENGKSSKTLARHIASIRSFHQFLLRERVVEHDPSVHIETPQGERKLPKVLSVSE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+      T  ET     R+ A+L LLY  GLR+SE ++L  +++      +R  GK
Sbjct: 117 VEALL-----QTPKETSAFGIRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCVGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G+K RI+PL     +AI  Y +    +L        LF    G  L+   F + +++L +
Sbjct: 172 GNKERIIPLGSLATEAIQRYIEKGRKELMGKKTVDALFLNHHGNRLSRQGFWKILKRLAK 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + +
Sbjct: 232 EANIEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKAR----LKD 287

Query: 313 IYDQTHPSI 321
           +Y Q HP  
Sbjct: 288 VYKQFHPRA 296


>gi|299135445|ref|ZP_07028635.1| tyrosine recombinase XerC [Afipia sp. 1NLS2]
 gi|298589853|gb|EFI50058.1| tyrosine recombinase XerC [Afipia sp. 1NLS2]
          Length = 327

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 128/315 (40%), Positives = 191/315 (60%), Gaps = 8/315 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
             + ++  E   WL +L+ ER LS  TL++YE D RQ L+FLA +  +  +++    +  
Sbjct: 19  PANADIQAEAARWLAHLKSERRLSPKTLEAYERDLRQCLMFLAEHWGKPASLKAFAAIEA 78

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           T++RAF++ RR   IG RSL R+L+G++SF ++L++        +  +R  K S +LP+ 
Sbjct: 79  TDVRAFMAARRADDIGGRSLMRALAGLRSFGRFLEREGKGKVGALSAIRAPKISKTLPKP 138

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--DQS 186
           L    A  L +  +        WI AR++A++ LLYG GLRISEAL L  ++I +     
Sbjct: 139 LAVSAARNLTEADIRAGEDRPPWIWARDAAVMALLYGSGLRISEALGLNRRDIPEPGRGD 198

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            + + GKG+K R+VP+L  V +A+ +Y   CP+ L    + P+F G RG PL+P + Q  
Sbjct: 199 VITVTGKGNKTRMVPVLQGVLEAVQDYIAQCPYPLA--PEKPVFVGARGGPLSPRIIQLT 256

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           + +LR  LGLP S T H LRHSFATHLLS GGDLR+IQ +LGH  LSTTQIYT ++++  
Sbjct: 257 MERLRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDAER- 315

Query: 307 GDWMMEIYDQTHPSI 321
              +M++Y   HP  
Sbjct: 316 ---LMDVYQSAHPRA 327


>gi|268319602|ref|YP_003293258.1| tyrosine recombinase xerD [Lactobacillus johnsonii FI9785]
 gi|262397977|emb|CAX66991.1| tyrosine recombinase xerD [Lactobacillus johnsonii FI9785]
          Length = 302

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 90/311 (28%), Positives = 161/311 (51%), Gaps = 18/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +    +++L+  ++ERGLS  T+ SY  D  ++L +L    E+        ++ Y  + A
Sbjct: 7   MKDNLEDYLRFSQVERGLSPNTIVSYRTDLEEYLSYLEDQNEKSW------EVDYLVVDA 60

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F++ ++ +     S+ R +S ++ F ++L ++ I     ++ + + K    LP AL+E++
Sbjct: 61  FLATQKDKGKATTSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEE 120

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D            +  R+ A+L +LY  G+R+SE ++L   +I  +   +R+ GK
Sbjct: 121 VTKLLD-----APDTNTRLGIRDRAMLEVLYATGMRVSELINLRTGDIHSELKIIRVLGK 175

Query: 194 GDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           G K R+VP+       + +Y           +      +F    G  L      + I++ 
Sbjct: 176 GSKERLVPITEVALSWLEKYQKDVRENQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKY 235

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            + +G+  + T HTLRH+FATHLL NG DLR +Q ILGH  ++TTQIYTN+  K+    +
Sbjct: 236 CQLIGITKNVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKH----I 291

Query: 311 MEIYDQTHPSI 321
           +E+Y+Q HP  
Sbjct: 292 LEVYNQAHPRA 302


>gi|300088077|ref|YP_003758599.1| tyrosine recombinase XerD [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527810|gb|ADJ26278.1| tyrosine recombinase XerD [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 303

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 92/311 (29%), Positives = 154/311 (49%), Gaps = 9/311 (2%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  +  N+L  L +E+G S  T  +Y  D  Q   F      ++         +  ++ +
Sbjct: 1   MKTDVDNFLNYLMVEKGFSGNTRDAYHNDLYQLADFSTRCLRQRGDQDLWDNFNRQDMLS 60

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++   + +     ++ R L+  KSF  +L +     ++   N+ + K    LP A++ +Q
Sbjct: 61  YLLDLKERNYAVTTVVRKLAAAKSFFSFLLEENKIRQNPTDNIESPKVGKPLPDAISVQQ 120

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++   L    E K     + A+L LLY  G+R+SE + L   ++  D+  +R  GK
Sbjct: 121 VKALLEQPTLAGGPEAKR----DRAMLELLYASGMRVSELIGLDLADVDCDEEQVRCFGK 176

Query: 194 GDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G+K RI+P+ P   + + EY + + P  +  N +  LF   RG+ L      + +++   
Sbjct: 177 GNKERIIPIHPQAARIVSEYIEEVRPRLVRSNDEKALFLNRRGERLTRQGLWQILKEYAV 236

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL    T HTLRHSFATH+L+ G DLRS+Q +LGH  +STTQIYT++ S    D +  
Sbjct: 237 AAGLNGQVTPHTLRHSFATHMLNGGADLRSVQELLGHANISTTQIYTHLTS----DHIRR 292

Query: 313 IYDQTHPSITQ 323
            YD  HP   +
Sbjct: 293 AYDSAHPRARK 303


>gi|229086660|ref|ZP_04218828.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-44]
 gi|228696607|gb|EEL49424.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-44]
          Length = 296

 Score =  283 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 161/309 (52%), Gaps = 14/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + ++++  + +E+GL+K T+ SYE D + ++ +L    +    I+T  +++   I  
Sbjct: 1   MEDQLKDFIHYMIVEKGLAKNTVVSYERDLKSYVKYLQNVEQ----IKTFHEVTRIHIVN 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+   +      ++L R ++ I+SF ++L + ++      +++   +    LP+ L+  +
Sbjct: 57  FLQYLKENGKSSKTLARHIASIRSFHQFLLRERVVEHDPSVHIETPQGERKLPKVLSVGE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+      T   T     R+ A+L LLY  GLR+SE ++L  +++      +R  GK
Sbjct: 117 VEALL-----QTPKATSAFGIRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G+K RI+PL     +AI  Y +    +L        LF    G  L+   F + +++L +
Sbjct: 172 GNKERIIPLGSLATEAIQRYIEKGRRELVGKKTVDALFLNHHGNRLSRQGFWKILKRLAK 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + +
Sbjct: 232 EANIEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKD 287

Query: 313 IYDQTHPSI 321
           +Y Q HP  
Sbjct: 288 VYKQFHPRA 296


>gi|205373757|ref|ZP_03226559.1| site-specific tyrosine recombinase XerD [Bacillus coahuilensis
           m4-4]
          Length = 297

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 98/310 (31%), Positives = 158/310 (50%), Gaps = 15/310 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + +++L  L+IERGLS  TL SYE D + +   L    +    I+ +  +    I  
Sbjct: 1   MEHQVKDFLHFLQIERGLSSNTLVSYERDLKSYCNHLKNTEQ----IEDLNHVVRGNIIE 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F++  + Q    +++ R ++ I+SF ++L + KIT     +++   K   SLP+ L+  +
Sbjct: 57  FLAFLKDQGKSSKTIARHIASIRSFHQFLLREKITDHDPTVHIDTPKAERSLPKVLSLDE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
             TL+D     + +  K    R+ A+L +LY  G+R+SE + L  +++      +R  GK
Sbjct: 117 VETLLD-----SPNLQKPSGIRDKAMLEILYATGIRVSELIELNLEDVHLTMGFVRCIGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G+K RI+PL       + EY +     L  +      LF    G  L    F + ++ L 
Sbjct: 172 GNKERIIPLGNHAITILKEYLEKARPKLRSSKYRTDALFLNHHGNRLTRQGFWKILKGLA 231

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        + 
Sbjct: 232 TKANIQKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----LK 287

Query: 312 EIYDQTHPSI 321
           E+Y + HP  
Sbjct: 288 EVYSKFHPRA 297


>gi|34222987|sp|Q92LK1|XERC_RHIME RecName: Full=Tyrosine recombinase xerC
          Length = 318

 Score =  283 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 143/318 (44%), Positives = 202/318 (63%), Gaps = 8/318 (2%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N L  I   E++ ER+ WL +L  ER LS+ T+ +YE DTRQFL FL  +      +  I
Sbjct: 9   NELLAIGHPEVMAERRRWLASLAEERRLSEKTVDAYERDTRQFLTFLTGHLAGPPRLSDI 68

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
             L   ++R F+++RR    G R+L R L+G++SFL+YL++  +   +    +R+ K+  
Sbjct: 69  CALRPADLRGFLAQRRKGGAGARTLGRGLAGLRSFLRYLERNGLANAAGAGAVRSPKQPK 128

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           SLP+AL +++AL +V         E  WI ARN+A+L LLYGCGLRI+EAL LTP +   
Sbjct: 129 SLPKALTDREALKVVTAD--AQLAEEPWIAARNAAVLTLLYGCGLRIAEALDLTPADFSG 186

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
             ++LR+ GKG K RIVP++ +  +A+  Y  LCP+ +    + P+FRG RG  L P + 
Sbjct: 187 PVTSLRVTGKGGKTRIVPMIAAAAEAVETYRKLCPYHIE--PEEPIFRGARGAKLQPAII 244

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           QR +++LR  LGLP S T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ+YT V+S
Sbjct: 245 QREMQKLRAALGLPDSATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDS 304

Query: 304 KNGGDWMMEIYDQTHPSI 321
                 ++EIYD+ HP  
Sbjct: 305 AR----LLEIYDRAHPRA 318


>gi|42519008|ref|NP_964938.1| integrase/recombinase XerD [Lactobacillus johnsonii NCC 533]
 gi|41583295|gb|AAS08904.1| integrase/recombinase XerD [Lactobacillus johnsonii NCC 533]
          Length = 296

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 90/311 (28%), Positives = 160/311 (51%), Gaps = 18/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +    +++L+  ++ERGLS  T+ SY  D  ++L +L    E         ++ Y  + A
Sbjct: 1   MKDNLEDYLRFSQVERGLSPNTIVSYRTDLEEYLSYLEDQNETSW------EVDYLVVDA 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F++ ++ +     S+ R +S ++ F ++L ++ I     ++ + + K    LP AL+E++
Sbjct: 55  FLATQKDKGKATTSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEE 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D            +  R+ A+L +LY  G+R+SE ++L   +I  +   +R+ GK
Sbjct: 115 VTKLLD-----APDTNTRLGIRDRAMLEVLYATGMRVSELINLRTGDIHSELKIIRVLGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           G K R+VP+       + +Y           +      +F    G  L      + I++ 
Sbjct: 170 GSKERLVPITEVALSWLEKYQKDVRENQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKY 229

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            + +G+  + T HTLRH+FATHLL NG DLR +Q ILGH  ++TTQIYTN+  K+    +
Sbjct: 230 CQLIGITKNVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKH----I 285

Query: 311 MEIYDQTHPSI 321
           +E+Y+Q HP  
Sbjct: 286 LEVYNQAHPRA 296


>gi|227889862|ref|ZP_04007667.1| integrase-recombinase [Lactobacillus johnsonii ATCC 33200]
 gi|227849726|gb|EEJ59812.1| integrase-recombinase [Lactobacillus johnsonii ATCC 33200]
          Length = 296

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 89/311 (28%), Positives = 160/311 (51%), Gaps = 18/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +    +++L+  ++ERGLS  T+ SY  D  ++L +L    E         ++ Y  + +
Sbjct: 1   MKDNLEDYLRFSQVERGLSPNTIVSYRTDLEEYLSYLEDQNETSW------EVDYLVVDS 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F++ ++ +     S+ R +S ++ F ++L ++ I     ++ + + K    LP AL+E++
Sbjct: 55  FLATQKDKGKATTSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEE 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D            +  R+ A+L +LY  G+R+SE ++L   +I  +   +R+ GK
Sbjct: 115 VTKLLD-----APDTNTSLGIRDRAMLEVLYATGMRVSELINLRTGDIHSELKIIRVLGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           G K R+VP+       + +Y           +      +F    G  L      + I++ 
Sbjct: 170 GSKERLVPITEVALSWLEKYQKDVRENQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKY 229

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            + +G+  + T HTLRH+FATHLL NG DLR +Q ILGH  ++TTQIYTN+  K+    +
Sbjct: 230 CQLIGITKNVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKH----I 285

Query: 311 MEIYDQTHPSI 321
           +E+Y+Q HP  
Sbjct: 286 LEVYNQAHPRA 296


>gi|239996020|ref|ZP_04716544.1| tyrosine recombinase [Alteromonas macleodii ATCC 27126]
          Length = 308

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 157/305 (51%), Gaps = 14/305 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                +++ L +E+GLS  T QSY  D  +  IF          ++ I  L+  +++ ++
Sbjct: 17  AHIDGFIEMLWLEKGLSDHTQQSYRTDLTKLAIF-----SNNQGVKDIAVLTTEQLQDYL 71

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           + R  + +  RS +R+LS I++F  +L  +++  +S +  + N K   +LP +L+E+Q  
Sbjct: 72  AYRHDKGLSTRSTQRALSAIRAFFVFLISKQVRVDSPVSALSNPKTPKALPSSLSEQQVE 131

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+     +       I+ R+ ++L +LY  GLR+SE + LT   I   Q  +R+ GKG+
Sbjct: 132 DLL-----NAPLTDDPIECRDKSMLEVLYATGLRVSELIGLTMDQISLQQGVVRVVGKGN 186

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R+VPL     + +L Y       L       +F   RG+ +    F   I+      G
Sbjct: 187 KERLVPLGEDAIEWLLTYIKTARPILASKASDVVFLSKRGQKMTRQTFWHRIKYYAVKAG 246

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  +  
Sbjct: 247 IEQHLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LQTLIH 302

Query: 316 QTHPS 320
             HP 
Sbjct: 303 SHHPR 307


>gi|329667457|gb|AEB93405.1| integrase/recombinase XerD [Lactobacillus johnsonii DPC 6026]
          Length = 296

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 90/311 (28%), Positives = 160/311 (51%), Gaps = 18/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +    +++L+  ++ERGLS  T+ SY  D  ++L +L    E         ++ Y  + A
Sbjct: 1   MKDNLEDYLRFSQVERGLSPNTIVSYRTDLEEYLSYLEDQNETSW------EVDYLVVDA 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F++ ++ +     S+ R +S ++ F ++L ++ I     ++ + + K    LP AL+E++
Sbjct: 55  FLATQKDKGKATTSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEE 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D            +  R+ A+L +LY  G+R+SE ++L   +I  +   +R+ GK
Sbjct: 115 VTKLLD-----APDTNTRLGIRDRAMLEVLYATGMRVSELINLRTGDIHSELKIIRVLGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           G K R+VP+       + +Y           +      +F    G  L      + I++ 
Sbjct: 170 GSKERLVPVTEVALSWLEKYQKDVRENQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKY 229

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            + +G+  + T HTLRH+FATHLL NG DLR +Q ILGH  ++TTQIYTN+  K+    +
Sbjct: 230 CQLIGITKNVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKH----I 285

Query: 311 MEIYDQTHPSI 321
           +E+Y+Q HP  
Sbjct: 286 LEVYNQAHPRA 296


>gi|229192302|ref|ZP_04319267.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 10876]
 gi|228591252|gb|EEK49106.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 10876]
          Length = 296

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 92/309 (29%), Positives = 161/309 (52%), Gaps = 14/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + ++++  + +E+GL+K T+ SYE D + ++ +L    + K    T  +++   I  
Sbjct: 1   MEDQLKDFIHYMVVEKGLAKNTVVSYERDLKSYVKYLQNVEQTK----TFHEVTRLHIVN 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+   +      ++L R ++ I+SF ++L + +       +++   +    LP+ L+  +
Sbjct: 57  FLQYLKENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L     L T   T     R+ A+L LLY  GLR+SE ++L  +++      +R  GK
Sbjct: 117 VEAL-----LQTPKMTSAFGIRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G+K RI+PL     +AI +Y +    +L    +   LF    G  L+   F + +++L +
Sbjct: 172 GNKERIIPLGSLATEAIQKYIEKGRRELIGKKVVDALFLNHHGNRLSRQGFWKILKRLAK 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + +
Sbjct: 232 EANIEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKD 287

Query: 313 IYDQTHPSI 321
           +Y Q HP  
Sbjct: 288 VYKQFHPRA 296


>gi|332140209|ref|YP_004425947.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550231|gb|AEA96949.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 308

 Score =  282 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 98/311 (31%), Positives = 159/311 (51%), Gaps = 14/311 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           V          +++ L +E+GLS+ T QSY  D  +  +F          I+ I  LS  
Sbjct: 11  VPPASQAHIDGFIEMLWLEKGLSEHTQQSYRTDLSKLAVF-----SNNQGIKDIAVLSTE 65

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +++ +++ R  + +  RS +R+LS I++F  YL  ++I  +S +  + N K   +LP +L
Sbjct: 66  QLQDYLAYRHDKGLSTRSTQRALSAIRAFFVYLISKQIRVDSPVSALSNPKTPKALPASL 125

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +E+Q   L     L+       I+ R+ ++L +LY  GLR+SE + LT   I   Q  +R
Sbjct: 126 SEQQVEDL-----LNAPQTDDPIECRDRSMLEVLYATGLRVSELIGLTMDQISLQQGVVR 180

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG+K R+VPL     + +L Y       L       ++   RG+ +    F   I+ 
Sbjct: 181 VVGKGNKERLVPLGEEAIEWLLTYIKTARPILATKTSDFVYLSKRGQKMTRQTFWHRIKY 240

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     
Sbjct: 241 YAVKAGIEQHLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER---- 296

Query: 310 MMEIYDQTHPS 320
           +  +    HP 
Sbjct: 297 LQTLIHSHHPR 307


>gi|30264167|ref|NP_846544.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           Ames]
 gi|47778274|ref|YP_020956.2| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49186997|ref|YP_030249.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           Sterne]
 gi|49480325|ref|YP_038149.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|65321483|ref|ZP_00394442.1| COG4974: Site-specific recombinase XerD [Bacillus anthracis str.
           A2012]
 gi|118479292|ref|YP_896443.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           str. Al Hakam]
 gi|165871247|ref|ZP_02215897.1| integrase/recombinase XerD [Bacillus anthracis str. A0488]
 gi|167633747|ref|ZP_02392071.1| integrase/recombinase XerD [Bacillus anthracis str. A0442]
 gi|167639424|ref|ZP_02397695.1| integrase/recombinase XerD [Bacillus anthracis str. A0193]
 gi|170687265|ref|ZP_02878483.1| integrase/recombinase XerD [Bacillus anthracis str. A0465]
 gi|170705812|ref|ZP_02896275.1| integrase/recombinase XerD [Bacillus anthracis str. A0389]
 gi|177652642|ref|ZP_02935058.1| integrase/recombinase XerD [Bacillus anthracis str. A0174]
 gi|190565945|ref|ZP_03018864.1| integrase/recombinase XerD [Bacillus anthracis Tsiankovskii-I]
 gi|196038584|ref|ZP_03105892.1| integrase/recombinase XerD [Bacillus cereus NVH0597-99]
 gi|196047216|ref|ZP_03114432.1| integrase/recombinase XerD [Bacillus cereus 03BB108]
 gi|218905229|ref|YP_002453063.1| integrase/recombinase XerD [Bacillus cereus AH820]
 gi|225866075|ref|YP_002751453.1| integrase/recombinase XerD [Bacillus cereus 03BB102]
 gi|227816868|ref|YP_002816877.1| integrase/recombinase XerD [Bacillus anthracis str. CDC 684]
 gi|228929139|ref|ZP_04092166.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228947809|ref|ZP_04110096.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229093151|ref|ZP_04224269.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-42]
 gi|229123612|ref|ZP_04252807.1| Tyrosine recombinase xerD [Bacillus cereus 95/8201]
 gi|229186335|ref|ZP_04313500.1| Tyrosine recombinase xerD [Bacillus cereus BGSC 6E1]
 gi|229604915|ref|YP_002868390.1| integrase/recombinase XerD [Bacillus anthracis str. A0248]
 gi|254683858|ref|ZP_05147718.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721693|ref|ZP_05183482.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           A1055]
 gi|254736205|ref|ZP_05193911.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           Western North America USA6153]
 gi|254744094|ref|ZP_05201777.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           Kruger B]
 gi|254754126|ref|ZP_05206161.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           Vollum]
 gi|254758184|ref|ZP_05210211.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           Australia 94]
 gi|301055587|ref|YP_003793798.1| tyrosine recombinase [Bacillus anthracis CI]
 gi|30258812|gb|AAP28030.1| integrase/recombinase XerD [Bacillus anthracis str. Ames]
 gi|47551979|gb|AAT33431.2| integrase/recombinase XerD [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49180924|gb|AAT56300.1| integrase/recombinase XerD [Bacillus anthracis str. Sterne]
 gi|49331881|gb|AAT62527.1| integrase/recombinase (tyrosine recombinase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|118418517|gb|ABK86936.1| tyrosine recombinase XerD subunit [Bacillus thuringiensis str. Al
           Hakam]
 gi|164713166|gb|EDR18693.1| integrase/recombinase XerD [Bacillus anthracis str. A0488]
 gi|167512483|gb|EDR87858.1| integrase/recombinase XerD [Bacillus anthracis str. A0193]
 gi|167531153|gb|EDR93840.1| integrase/recombinase XerD [Bacillus anthracis str. A0442]
 gi|170129352|gb|EDS98216.1| integrase/recombinase XerD [Bacillus anthracis str. A0389]
 gi|170668882|gb|EDT19627.1| integrase/recombinase XerD [Bacillus anthracis str. A0465]
 gi|172081977|gb|EDT67045.1| integrase/recombinase XerD [Bacillus anthracis str. A0174]
 gi|190562864|gb|EDV16830.1| integrase/recombinase XerD [Bacillus anthracis Tsiankovskii-I]
 gi|196021965|gb|EDX60656.1| integrase/recombinase XerD [Bacillus cereus 03BB108]
 gi|196030307|gb|EDX68906.1| integrase/recombinase XerD [Bacillus cereus NVH0597-99]
 gi|218535959|gb|ACK88357.1| integrase/recombinase XerD [Bacillus cereus AH820]
 gi|225786005|gb|ACO26222.1| integrase/recombinase XerD [Bacillus cereus 03BB102]
 gi|227002405|gb|ACP12148.1| integrase/recombinase XerD [Bacillus anthracis str. CDC 684]
 gi|228597129|gb|EEK54784.1| Tyrosine recombinase xerD [Bacillus cereus BGSC 6E1]
 gi|228659747|gb|EEL15392.1| Tyrosine recombinase xerD [Bacillus cereus 95/8201]
 gi|228690125|gb|EEL43919.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-42]
 gi|228811796|gb|EEM58130.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228830429|gb|EEM76039.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229269323|gb|ACQ50960.1| integrase/recombinase XerD [Bacillus anthracis str. A0248]
 gi|300377756|gb|ADK06660.1| tyrosine recombinase [Bacillus cereus biovar anthracis str. CI]
          Length = 296

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 161/309 (52%), Gaps = 14/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + ++++  + +E+GL+K T+ SYE D + ++ +L    + K    +  +++   I  
Sbjct: 1   MEDQLKDFIHYMVVEKGLAKNTVVSYERDLKSYVKYLQKVEQAK----SFHEVTRLHIVN 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+   +      ++L R ++ I+SF ++L + +       +++   +    LP+ L+  +
Sbjct: 57  FLQHLKENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+      T   T     R+ A+L LLY  GLR+SE ++L  +++      +R  GK
Sbjct: 117 VEALL-----QTPKMTSAFGVRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCVGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G+K RI+PL     +AI +Y +    +L    +   LF    G  L+   F + +++L +
Sbjct: 172 GNKERIIPLGSLATEAIQKYIEKGRRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAK 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + +
Sbjct: 232 EANIEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKD 287

Query: 313 IYDQTHPSI 321
           +Y Q HP  
Sbjct: 288 VYKQFHPRA 296


>gi|30022176|ref|NP_833807.1| site-specific tyrosine recombinase XerD [Bacillus cereus ATCC
           14579]
 gi|206971233|ref|ZP_03232184.1| integrase/recombinase XerD [Bacillus cereus AH1134]
 gi|218235095|ref|YP_002368894.1| site-specific tyrosine recombinase XerD [Bacillus cereus B4264]
 gi|218899252|ref|YP_002447663.1| integrase/recombinase XerD [Bacillus cereus G9842]
 gi|228902600|ref|ZP_04066751.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 4222]
 gi|228909920|ref|ZP_04073741.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 200]
 gi|228941242|ref|ZP_04103795.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228954374|ref|ZP_04116400.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228960355|ref|ZP_04122008.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228974174|ref|ZP_04134744.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980765|ref|ZP_04141070.1| Tyrosine recombinase xerD [Bacillus thuringiensis Bt407]
 gi|229047783|ref|ZP_04193363.1| Tyrosine recombinase xerD [Bacillus cereus AH676]
 gi|229071595|ref|ZP_04204813.1| Tyrosine recombinase xerD [Bacillus cereus F65185]
 gi|229081347|ref|ZP_04213850.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-2]
 gi|229111564|ref|ZP_04241115.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-15]
 gi|229129370|ref|ZP_04258341.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-Cer4]
 gi|229146665|ref|ZP_04275032.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST24]
 gi|229152292|ref|ZP_04280485.1| Tyrosine recombinase xerD [Bacillus cereus m1550]
 gi|229180370|ref|ZP_04307713.1| Tyrosine recombinase xerD [Bacillus cereus 172560W]
 gi|296504585|ref|YP_003666285.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           BMB171]
 gi|29897733|gb|AAP11008.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 14579]
 gi|206734005|gb|EDZ51176.1| integrase/recombinase XerD [Bacillus cereus AH1134]
 gi|218163052|gb|ACK63044.1| integrase/recombinase XerD [Bacillus cereus B4264]
 gi|218543889|gb|ACK96283.1| integrase/recombinase XerD [Bacillus cereus G9842]
 gi|228603117|gb|EEK60595.1| Tyrosine recombinase xerD [Bacillus cereus 172560W]
 gi|228631254|gb|EEK87890.1| Tyrosine recombinase xerD [Bacillus cereus m1550]
 gi|228636835|gb|EEK93298.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST24]
 gi|228653975|gb|EEL09842.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-Cer4]
 gi|228671946|gb|EEL27239.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-15]
 gi|228701969|gb|EEL54452.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-2]
 gi|228711531|gb|EEL63488.1| Tyrosine recombinase xerD [Bacillus cereus F65185]
 gi|228723575|gb|EEL74940.1| Tyrosine recombinase xerD [Bacillus cereus AH676]
 gi|228778934|gb|EEM27196.1| Tyrosine recombinase xerD [Bacillus thuringiensis Bt407]
 gi|228785514|gb|EEM33523.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228799379|gb|EEM46343.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228805306|gb|EEM51899.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228818401|gb|EEM64473.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228849755|gb|EEM94588.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 200]
 gi|228857041|gb|EEN01550.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 4222]
 gi|296325637|gb|ADH08565.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           BMB171]
 gi|326941864|gb|AEA17760.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 296

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 92/309 (29%), Positives = 161/309 (52%), Gaps = 14/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + ++++  + +E+GL+K T+ SYE D + ++ +L    + K    T  +++   I  
Sbjct: 1   MEDQLKDFIHYMVVEKGLAKNTVVSYERDLKSYVKYLQNVEQTK----TFHEVTRLHIVN 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+   +      ++L R ++ I+SF ++L + +       +++   +    LP+ L+  +
Sbjct: 57  FLQYLKENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L     L T   T     R+ A+L LLY  GLR+SE ++L  +++      +R  GK
Sbjct: 117 VEAL-----LQTPKMTSAFGIRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G+K RI+PL     +AI +Y +    +L    +   LF    G  L+   F + +++L +
Sbjct: 172 GNKERIIPLGSLATEAIQKYIEKGRRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAK 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + +
Sbjct: 232 EANIEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKD 287

Query: 313 IYDQTHPSI 321
           +Y Q HP  
Sbjct: 288 VYKQFHPRA 296


>gi|240851325|ref|YP_002972728.1| integrase /recombinase XerC [Bartonella grahamii as4aup]
 gi|240268448|gb|ACS52036.1| integrase /recombinase XerC [Bartonella grahamii as4aup]
          Length = 322

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 147/321 (45%), Positives = 202/321 (62%), Gaps = 10/321 (3%)

Query: 2   EGNNLPEIVS-FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           +  N+P I +   +L  R+NWL+ L   R +S  T+Q+YE DTRQFL FL  +     T+
Sbjct: 9   KDENIPLIPADHAILNARKNWLECLVQTRRMSAQTMQAYERDTRQFLSFLCQHLSHTPTL 68

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             +  L  +++RA+++ RRT  +  RSL R ++GI+SF KYL +  I        +R+ K
Sbjct: 69  TDLAHLRISDLRAYLAYRRTNNVSARSLSRGVAGIRSFFKYLSREGIVNVPAAQLIRSPK 128

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
              SLP+ L  K AL +V     +      WI ARN+A+L LLYGCG+RISEALSLTP+ 
Sbjct: 129 HPKSLPKPLAIKSALHIVKQE--NQLENEPWISARNAAVLMLLYGCGMRISEALSLTPEQ 186

Query: 181 I-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
               ++++L I GKG K R+VPL+  V +A+  Y   CP+ L  N   P+FRG RG PL 
Sbjct: 187 FSDPEKTSLFITGKGGKTRLVPLIKVVYEAVQNYLKCCPYPLVNNQ--PIFRGARGGPLQ 244

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           P + Q+ +R LR  LGLP + T HTLRHSFATHLLS GGDLR+IQ +LGH  LSTTQIYT
Sbjct: 245 PAIIQKTVRNLRASLGLPETATPHTLRHSFATHLLSRGGDLRTIQELLGHASLSTTQIYT 304

Query: 300 NVNSKNGGDWMMEIYDQTHPS 320
           +V++    D +++IY + HP 
Sbjct: 305 HVDT----DHLLKIYQKAHPR 321


>gi|15614092|ref|NP_242395.1| integrase/recombinase [Bacillus halodurans C-125]
 gi|34223074|sp|Q9KCP0|XERD_BACHD RecName: Full=Tyrosine recombinase xerD
 gi|10174146|dbj|BAB05248.1| integrase/recombinase [Bacillus halodurans C-125]
          Length = 299

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 97/305 (31%), Positives = 162/305 (53%), Gaps = 14/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q +L   ++ERGLS  T+QSY  D +Q++ ++    E    I++ R ++   I  ++  
Sbjct: 8   LQQFLHFQKVERGLSNNTIQSYGRDLKQYIQYVERVEE----IRSARNITRETILHYLYH 63

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R Q   + S+ R+++ I+SF ++L + K++     +++   K +  LP+AL  ++   L
Sbjct: 64  LREQGRAETSIARAVAAIRSFHQFLLREKLSDSDPTVHVEIPKATKRLPKALTIEEVEAL 123

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +     ++         RN A+L LLY  G+R+SE + LT  +I      +R  GKG+K 
Sbjct: 124 L-----NSPQGRDPFSLRNKAMLELLYATGMRVSELIGLTLSDIHLSMGFVRCLGKGNKE 178

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RI+P+     +A+  Y  +     +       +F    G+PL+   F + ++QL + + +
Sbjct: 179 RIIPIGQVATEAVESYLANGRGKLMKKQSHDHVFVNHHGRPLSRQGFWKMLKQLAKNVNI 238

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        M ++Y  
Sbjct: 239 DKPLTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----MRDVYAH 294

Query: 317 THPSI 321
            HP  
Sbjct: 295 FHPRA 299


>gi|228922841|ref|ZP_04086139.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836896|gb|EEM82239.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 296

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 161/309 (52%), Gaps = 14/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + ++++  + +E+GL+K T+ SYE D + ++ +L    + K    T  +++   I  
Sbjct: 1   MEDQLKDFIHYMVVEKGLAKNTVVSYERDLKSYIKYLQNVEQTK----TFHEVTRLHIVN 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+   +      ++L R ++ I+SF ++L + +       +++   +    LP+ L+  +
Sbjct: 57  FLQYLKENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+      T   T     R+ A+L LLY  GLR+SE ++L  +++      +R  GK
Sbjct: 117 VEALL-----QTPKMTSAFGIRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G+K RI+PL     +AI +Y +    +L    +   LF    G  L+   F + +++L +
Sbjct: 172 GNKERIIPLGSLATEAIQKYIEKGRRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAK 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + +
Sbjct: 232 EANIEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKD 287

Query: 313 IYDQTHPSI 321
           +Y Q HP  
Sbjct: 288 VYKQFHPRA 296


>gi|196034794|ref|ZP_03102201.1| integrase/recombinase XerD [Bacillus cereus W]
 gi|195992333|gb|EDX56294.1| integrase/recombinase XerD [Bacillus cereus W]
          Length = 296

 Score =  282 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 161/309 (52%), Gaps = 14/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + ++++  + +E+GL+K T+ SYE D + ++ +L    + K    +  +++   I  
Sbjct: 1   MEDQLKDFIHYMVVEKGLAKNTVVSYERDLKSYVKYLQKVEQAK----SFHEVTRLHIVN 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+   +      ++L R ++ I+SF ++L + +       +++   +    LP+ L+  +
Sbjct: 57  FLQHLKENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L     L T   T     R+ A+L LLY  GLR+SE ++L  +++      +R  GK
Sbjct: 117 VEAL-----LQTPKMTSVFGVRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCVGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G+K RI+PL     +AI +Y +    +L    +   LF    G  L+   F + +++L +
Sbjct: 172 GNKERIIPLGSLATEAIQKYIEKGRRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAK 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + +
Sbjct: 232 EANIEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKD 287

Query: 313 IYDQTHPSI 321
           +Y Q HP  
Sbjct: 288 VYKQFHPRA 296


>gi|241896295|ref|ZP_04783591.1| site-specific recombinase XerD [Weissella paramesenteroides ATCC
           33313]
 gi|241870456|gb|EER74207.1| site-specific recombinase XerD [Weissella paramesenteroides ATCC
           33313]
          Length = 302

 Score =  282 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 91/303 (30%), Positives = 151/303 (49%), Gaps = 15/303 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L +ERGLS  T  SY+ D  QF  +L     + +T+     +    I AF+ +  
Sbjct: 14  DYLHYLTVERGLSANTKHSYQQDLVQFFQYLIAEKYDTLTV-----VDRFTIMAFLGQLE 68

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +     ++ R +S ++ F ++++   + T + +  + + KK+  LP  L  ++   L+ 
Sbjct: 69  QKGKSRNTIIRMVSTLRKFFEFVQMNNLITSNPMDQVDSPKKAQHLPAVLTLEEVEALL- 127

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                       +  RN  IL ++Y  GLR+SE ++L   N+  D   ++  GKGDK RI
Sbjct: 128 ----QVPDTNTPLGLRNRTILEVMYATGLRVSELVNLRLDNLHLDLGLIQTIGKGDKERI 183

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+     K +  Y +     L       + F    G  L      + I+Q  +  G+  
Sbjct: 184 VPIGDVAVKWLENYLNNSRPLLGKQQDPHVIFLNDHGHQLTRQGVWKLIKQWVKQAGITK 243

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HTLRHSFATH+L NG DLR +Q +LGH  +STTQIYT++++K     + E+Y++ H
Sbjct: 244 DVSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISNKR----LTEVYEKAH 299

Query: 319 PSI 321
           P  
Sbjct: 300 PRA 302


>gi|42783204|ref|NP_980451.1| site-specific tyrosine recombinase XerD [Bacillus cereus ATCC
           10987]
 gi|206976263|ref|ZP_03237171.1| integrase/recombinase XerD [Bacillus cereus H3081.97]
 gi|217961583|ref|YP_002340153.1| site-specific tyrosine recombinase XerD [Bacillus cereus AH187]
 gi|229140825|ref|ZP_04269370.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST26]
 gi|229198213|ref|ZP_04324921.1| Tyrosine recombinase xerD [Bacillus cereus m1293]
 gi|42739132|gb|AAS43059.1| integrase/recombinase XerD [Bacillus cereus ATCC 10987]
 gi|206745459|gb|EDZ56858.1| integrase/recombinase XerD [Bacillus cereus H3081.97]
 gi|217064224|gb|ACJ78474.1| integrase/recombinase XerD [Bacillus cereus AH187]
 gi|228585232|gb|EEK43342.1| Tyrosine recombinase xerD [Bacillus cereus m1293]
 gi|228642615|gb|EEK98901.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST26]
 gi|324327997|gb|ADY23257.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 296

 Score =  282 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 161/309 (52%), Gaps = 14/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + ++++  + +E+GL+K T+ SYE D + ++ +L    + K    +  +++   I  
Sbjct: 1   MEDQLKDFIHYMVVEKGLAKNTVVSYERDLKSYVKYLQNVEQAK----SFHEVTRLHIVN 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+   +      ++L R ++ I+SF ++L + +       +++   +    LP+ L+  +
Sbjct: 57  FLQHLKENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+      T   T     R+ A+L LLY  GLR+SE ++L  +++      +R  GK
Sbjct: 117 VEALL-----QTPKMTSAFGVRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G+K RI+PL     +AI +Y +    +L    +   LF    G  L+   F + +++L +
Sbjct: 172 GNKERIIPLGSLATEAIQKYIEKGRRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAK 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + +
Sbjct: 232 EANIEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKD 287

Query: 313 IYDQTHPSI 321
           +Y Q HP  
Sbjct: 288 VYKQFHPRA 296


>gi|53802409|ref|YP_112927.1| tyrosine recombinase XerD [Methylococcus capsulatus str. Bath]
 gi|53756170|gb|AAU90461.1| tyrosine recombinase XerD [Methylococcus capsulatus str. Bath]
          Length = 309

 Score =  281 bits (720), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 101/307 (32%), Positives = 151/307 (49%), Gaps = 15/307 (4%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   Q ++++L +E GLS  TL++Y  D R F  +LA     ++T      L+  +I A+
Sbjct: 16  LLAIQRFVESLWVEEGLSPHTLKAYGSDLRLFAAWLATNRCAELT-----ALTGEDIEAY 70

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +  R ++K   R+  R LS I+ F  Y  +R   T      +   K    LP  L E + 
Sbjct: 71  LGWRHSRKSKSRTSARVLSSIRHFCAYRLRRGEITGDPCALIAPPKLGRFLPDTLTESEV 130

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+             +  R+ A+L +LY  GLR+SE + L+   I   Q  +RI GKG
Sbjct: 131 EALL-----AAPDVDTPLGFRDRAMLEMLYATGLRVSELVGLSFGQISLRQGVVRISGKG 185

Query: 195 DKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           DK R+VP+       +  Y D + P  L       LF   RG  +    F   I++    
Sbjct: 186 DKDRLVPVGEEALDWLERYLDKVRPVTLKGRQSDFLFVTDRGGAMTRQAFWHLIKRYAGQ 245

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V  +     + E+
Sbjct: 246 AGISKPLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQER----LKEL 301

Query: 314 YDQTHPS 320
           + + HP 
Sbjct: 302 HTRFHPR 308


>gi|15966799|ref|NP_387152.1| site-specific tyrosine recombinase XerC [Sinorhizobium meliloti
           1021]
 gi|307301627|ref|ZP_07581386.1| integrase family protein [Sinorhizobium meliloti BL225C]
 gi|15076071|emb|CAC47625.1| Probable integrase/recombinase [Sinorhizobium meliloti 1021]
 gi|306903325|gb|EFN33914.1| integrase family protein [Sinorhizobium meliloti BL225C]
          Length = 330

 Score =  281 bits (720), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 143/318 (44%), Positives = 202/318 (63%), Gaps = 8/318 (2%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N L  I   E++ ER+ WL +L  ER LS+ T+ +YE DTRQFL FL  +      +  I
Sbjct: 21  NELLAIGHPEVMAERRRWLASLAEERRLSEKTVDAYERDTRQFLTFLTGHLAGPPRLSDI 80

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
             L   ++R F+++RR    G R+L R L+G++SFL+YL++  +   +    +R+ K+  
Sbjct: 81  CALRPADLRGFLAQRRKGGAGARTLGRGLAGLRSFLRYLERNGLANAAGAGAVRSPKQPK 140

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           SLP+AL +++AL +V         E  WI ARN+A+L LLYGCGLRI+EAL LTP +   
Sbjct: 141 SLPKALTDREALKVVTAD--AQLAEEPWIAARNAAVLTLLYGCGLRIAEALDLTPADFSG 198

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
             ++LR+ GKG K RIVP++ +  +A+  Y  LCP+ +    + P+FRG RG  L P + 
Sbjct: 199 PVTSLRVTGKGGKTRIVPMIAAAAEAVETYRKLCPYHIE--PEEPIFRGARGAKLQPAII 256

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           QR +++LR  LGLP S T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ+YT V+S
Sbjct: 257 QREMQKLRAALGLPDSATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDS 316

Query: 304 KNGGDWMMEIYDQTHPSI 321
                 ++EIYD+ HP  
Sbjct: 317 AR----LLEIYDRAHPRA 330


>gi|229163028|ref|ZP_04290984.1| Tyrosine recombinase xerD [Bacillus cereus R309803]
 gi|228620434|gb|EEK77304.1| Tyrosine recombinase xerD [Bacillus cereus R309803]
          Length = 296

 Score =  281 bits (720), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 161/309 (52%), Gaps = 14/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + ++++  + +E+GL+K T+ SYE D + ++ +L    + K    T  +++   I  
Sbjct: 1   MEDQLKDFIHYMVVEKGLAKNTVVSYERDLKSYVKYLQNVEQTK----TFHEVTRLHIVN 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+   +      ++L R ++ I+SF ++L + +       +++   +    LP+ L+  +
Sbjct: 57  FLQHLKENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+      T   T     R+ A+L LLY  GLR+SE ++L  +++      +R  GK
Sbjct: 117 VEALL-----QTPKMTSAFGVRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G+K RI+PL     +AI +Y +    +L    +   LF    G  L+   F + +++L +
Sbjct: 172 GNKERIIPLGSLATEAIQKYIEKGRRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAK 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + +
Sbjct: 232 EANIEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKD 287

Query: 313 IYDQTHPSI 321
           +Y Q HP  
Sbjct: 288 VYKQFHPRA 296


>gi|260425750|ref|ZP_05779730.1| site-specific recombinase, phage integrase family [Citreicella sp.
           SE45]
 gi|260423690|gb|EEX16940.1| site-specific recombinase, phage integrase family [Citreicella sp.
           SE45]
          Length = 308

 Score =  281 bits (720), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 124/313 (39%), Positives = 191/313 (61%), Gaps = 9/313 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++S    +  +NWL +    +G ++ T+ +Y  D  +F++FL  +  E   ++ + +++ 
Sbjct: 4   LISPAAREALENWLASARALKGAAENTITAYRADVLEFIVFLTTHHAEPQGLKPLARVTT 63

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++RAF++  R Q    RS+ R LS +KSF ++L +R+    + ++  R  K    LPR 
Sbjct: 64  PDMRAFMAHLRGQGAAPRSMARKLSAVKSFYRWLAEREGFEPTAVIMARAPKFQKKLPRP 123

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+E  A  +++ V + ++    WI AR++A++ LLYGCGLRISEAL L  ++    +S L
Sbjct: 124 LDESAARAMIETVEMQSAD--SWIGARDAAVVTLLYGCGLRISEALGLRGRDWPMGES-L 180

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKG K RIVP+LP  R A+  Y  LCPF+     + P+FRG RG  LNP + Q+   
Sbjct: 181 RITGKGGKERIVPVLPVARDAVGIYLQLCPFE--PEPEAPIFRGARGGALNPRLIQKVTE 238

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           + R  LGLP + T H +RHSFATHLL+ GGDLR+IQ +LGH  LSTTQ YT V+  +   
Sbjct: 239 KARLQLGLPATATPHAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYTAVDEVH--- 295

Query: 309 WMMEIYDQTHPSI 321
            +M++Y+ +HP  
Sbjct: 296 -LMKVYEASHPKA 307


>gi|217963893|ref|YP_002349571.1| tyrosine recombinase XerD [Listeria monocytogenes HCC23]
 gi|290892115|ref|ZP_06555111.1| integrase/recombinase XerD [Listeria monocytogenes FSL J2-071]
 gi|217333163|gb|ACK38957.1| tyrosine recombinase XerD [Listeria monocytogenes HCC23]
 gi|290558238|gb|EFD91756.1| integrase/recombinase XerD [Listeria monocytogenes FSL J2-071]
 gi|307571537|emb|CAR84716.1| integrase/recombinase [Listeria monocytogenes L99]
          Length = 297

 Score =  281 bits (720), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 92/306 (30%), Positives = 155/306 (50%), Gaps = 15/306 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L  L +ERGLS  T+++YE D R F+ ++         +     L  ++I  F++ 
Sbjct: 5   IEDFLHFLIVERGLSANTIKAYERDLRYFVSYMDVAK----GLTDPNTLERSDIVGFMAF 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R +    RS+ R ++ ++SF  YL      +   ++ +   K++  LP+ LN      L
Sbjct: 61  ARQEGKSPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVEKL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +      +S  +  +  R+ A++ +LY  GLR++E +SL   ++      ++  GKGDK 
Sbjct: 121 L-----SSSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKE 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           RI+PL  +    + +Y +     L         +F    G+ L    F + ++ + +  G
Sbjct: 176 RIIPLGKTATTVLEKYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESG 235

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT+V        + ++Y 
Sbjct: 236 IEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLR----LKDVYK 291

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 292 QFHPRA 297


>gi|52141402|ref|YP_085426.1| site-specific tyrosine recombinase XerD [Bacillus cereus E33L]
 gi|228987282|ref|ZP_04147403.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229157674|ref|ZP_04285749.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 4342]
 gi|51974871|gb|AAU16421.1| integrase/recombinase (tyrosine recombinase) [Bacillus cereus E33L]
 gi|228625631|gb|EEK82383.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 4342]
 gi|228772511|gb|EEM20956.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 296

 Score =  281 bits (720), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 161/309 (52%), Gaps = 14/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + ++++  + +E+GL+K T+ SYE D + ++ +L    + K    +  +++   I  
Sbjct: 1   MEDQLKDFIHYMVVEKGLAKNTVVSYERDLKSYVKYLQKVEQAK----SFHEVTRLHIVN 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+   +      ++L R ++ I+SF ++L + +       +++   +    LP+ L+  +
Sbjct: 57  FLQHLKENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+      T   T     R+ A+L LLY  GLR+SE ++L  +++      +R  GK
Sbjct: 117 VEALL-----QTPKMTSAFGVRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G+K RI+PL     +AI +Y +    +L    +   LF    G  L+   F + +++L +
Sbjct: 172 GNKERIIPLGSLATEAIQKYIEKGRRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAK 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + +
Sbjct: 232 EANIEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKD 287

Query: 313 IYDQTHPSI 321
           +Y Q HP  
Sbjct: 288 VYKQFHPRA 296


>gi|302389650|ref|YP_003825471.1| tyrosine recombinase XerC [Thermosediminibacter oceani DSM 16646]
 gi|302200278|gb|ADL07848.1| tyrosine recombinase XerC [Thermosediminibacter oceani DSM 16646]
          Length = 298

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 153/304 (50%), Gaps = 13/304 (4%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
              ++L  +   +  S  TL++Y  D  QF+ +L      K   +T+  +++ +IR F++
Sbjct: 5   AIDSFLTYISAAKNQSPNTLKAYANDLGQFIEYLEQNKISKT--KTLNDITHLDIRGFLA 62

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             +      +++ R LS I+SF +YL    + +E     ++ +K    LP  L   +   
Sbjct: 63  YLKESGASKKTIARKLSAIRSFFRYLSTEGLVSEDPTKMVQGMKLPKKLPLFLYPAEIEA 122

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+      ++     +  R+ AI+ LLY  G+R+SE +SL  +++    + + + GKG K
Sbjct: 123 LL------SAPGQDVLGIRDRAIMELLYATGMRVSELVSLKLKDVNLGANFIIVFGKGSK 176

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R+V       +++ EY       L  N+    LF    G  L     +R I +  + L 
Sbjct: 177 ERVVFFGSKAAESLEEYLRKSRPYLVKNLTCDYLFLNKNGTRLTDRSVRRIIDKYVKLLS 236

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L    + HTLRH+FATH+L+NG DL+++Q +LGH  LSTTQIYT+V  +     + E+YD
Sbjct: 237 LNAKISPHTLRHTFATHMLNNGADLKTVQELLGHVSLSTTQIYTHVTKER----LKEVYD 292

Query: 316 QTHP 319
           +  P
Sbjct: 293 KAFP 296


>gi|229174766|ref|ZP_04302290.1| Tyrosine recombinase xerD [Bacillus cereus MM3]
 gi|228608756|gb|EEK66054.1| Tyrosine recombinase xerD [Bacillus cereus MM3]
          Length = 296

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 161/309 (52%), Gaps = 14/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + ++++  + +E+GL+K T+ SYE D + ++ +L    + K    +  +++   I  
Sbjct: 1   MEDQLKDFIHYMVVEKGLAKNTVVSYERDLKSYVKYLQNVEQAK----SFHEVTRLHIVN 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+   +      ++L R ++ I+SF ++L + +       +++   +    LP+ L+  +
Sbjct: 57  FLQHLKENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSIDE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+      T   T     R+ A+L LLY  GLR+SE ++L  +++      +R  GK
Sbjct: 117 VEALL-----QTPKMTSAFGVRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G+K RI+PL     +AI +Y +    +L    +   LF    G  L+   F + +++L +
Sbjct: 172 GNKERIIPLGSLATEAIQKYIEKGRRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAK 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + +
Sbjct: 232 EANIEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKAR----LKD 287

Query: 313 IYDQTHPSI 321
           +Y Q HP  
Sbjct: 288 VYKQFHPRA 296


>gi|225174860|ref|ZP_03728857.1| tyrosine recombinase XerD [Dethiobacter alkaliphilus AHT 1]
 gi|225169500|gb|EEG78297.1| tyrosine recombinase XerD [Dethiobacter alkaliphilus AHT 1]
          Length = 295

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 157/309 (50%), Gaps = 15/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +  ++++  L +E+GL+K TL+SY  D R +  +L     ++  I ++ + S + I  
Sbjct: 1   MDRTLRDFIHYLSVEKGLAKNTLESYNRDLRTYYTYL-----KQNGITSLEETSRSNIVG 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++   +       +L R+++ I+SF  YL + +   E+    + + K    LPR L  ++
Sbjct: 56  YLLSLQNMGKATSTLSRNMASIRSFYNYLFQERHLVENPAAELESPKLEKKLPRVLTPQE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++        +T+    R+ A+L ++Y  G+R+SE +SL   ++  D   +R  GK
Sbjct: 116 MDLLLEQ-----PDQTQVTGIRDKAMLEVIYATGIRVSELMSLDIGDVNLDAGFIRCLGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRR 252
           G K RI+PL     + +  Y +     L        LF    G  L    F + +++   
Sbjct: 171 GSKERIIPLGSVAIRNVGRYLNEGRPKLVRQAGEASLFVNQHGNRLTRQGFWKILKKYAT 230

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    T HT+RHSFATHLL NG DLRS+Q +LGH  +STTQIYT V        + +
Sbjct: 231 RAGITKEITPHTMRHSFATHLLENGADLRSVQEMLGHADISTTQIYTQVT----KHKLRD 286

Query: 313 IYDQTHPSI 321
           +Y+++HP  
Sbjct: 287 VYEKSHPRA 295


>gi|209883739|ref|YP_002287596.1| tyrosine recombinase XerC [Oligotropha carboxidovorans OM5]
 gi|209871935|gb|ACI91731.1| tyrosine recombinase XerC [Oligotropha carboxidovorans OM5]
          Length = 355

 Score =  281 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 126/311 (40%), Positives = 191/311 (61%), Gaps = 8/311 (2%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +   E   WL +L+ ER LS  TL++YE D RQ + FLA +  + +++ +   +  T++R
Sbjct: 51  DFQAEVARWLAHLKSERRLSPKTLEAYERDLRQCIGFLAEHWGKPVSLASFAGIEATDVR 110

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           AF++ RR+  +  RSL R+L+G++SF ++L++        +  +R  K S SLP+ L   
Sbjct: 111 AFMASRRSHDVAGRSLMRALAGLRSFGRFLEREGKGKVGALSAIRAPKISKSLPKPLAVS 170

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRI 190
            A  L +  +        WI AR++A++ LLYG GLRISEAL L  ++I +      + +
Sbjct: 171 AARHLTEAEIRAGEDRPPWIWARDAAVMALLYGSGLRISEALGLARRDIPEPGRGDVITV 230

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG+K R+VP+L +V  A+ +Y   CP++L+ +   P+F G RG PL+P + Q  + +L
Sbjct: 231 TGKGNKTRMVPVLQAVLDAVQDYIAQCPYELSPDK--PVFVGARGGPLSPRIIQLTMERL 288

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           R  LGLP S T H LRHSFATHLLS GGDLR+IQ +LGH  LSTTQIYT ++++     +
Sbjct: 289 RGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDAER----L 344

Query: 311 MEIYDQTHPSI 321
           M++Y   HP  
Sbjct: 345 MDVYQSAHPRA 355


>gi|328957336|ref|YP_004374722.1| site-specific tyrosine recombinase XerD [Carnobacterium sp. 17-4]
 gi|328673660|gb|AEB29706.1| site-specific tyrosine recombinase XerD [Carnobacterium sp. 17-4]
          Length = 299

 Score =  281 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 98/311 (31%), Positives = 167/311 (53%), Gaps = 16/311 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L ++ + +++ L IERGLSK T++SY+ D RQ+L+F+     E+I +    Q+    + 
Sbjct: 3   KLNEDVEEYIRFLTIERGLSKNTIESYKRDIRQYLVFI-----EQIKVTKWDQIDRYTVL 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +F+   + ++    ++ R +S ++ F ++LK+ +I+    +L++   KK+  LP+ L+ K
Sbjct: 58  SFLQDLKEKEKSAGTIIRMISCLRQFHQFLKQEQISQSDPMLHIDTPKKAQKLPKVLSIK 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L++     T +  + +  R+ A+L ++Y  GLR+SE   L   ++      ++  G
Sbjct: 118 EVDRLIE-----TPNTGETLGLRDRAMLEVMYATGLRVSELTELKLDDLHLSLGLIQTIG 172

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQL 250
           KGDK RI+PL       I +Y       L  + Q    LF    G+ L      + ++ +
Sbjct: 173 KGDKERIIPLGDLAITWIEKYLRYSRTKLEKDGQRSPHLFLNHHGRKLTRQGVWKNLKII 232

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  G+    T HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT++  K     M
Sbjct: 233 VKKAGIEKEVTPHTLRHSFATHLLENGADLRVVQELLGHSDISTTQIYTHITKKR----M 288

Query: 311 MEIYDQTHPSI 321
             +Y   HP  
Sbjct: 289 SSVYKTYHPRA 299


>gi|254440821|ref|ZP_05054314.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198250899|gb|EDY75214.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 319

 Score =  281 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 185/316 (58%), Gaps = 9/316 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++S  +     +WL +     G +  T+ +Y+ D   FL F+  Y      +  I +++ 
Sbjct: 1   MISPAMSSALGDWLDHKRALNGAASNTITAYQTDLLGFLNFMTSYYSGAQGLGPISRITV 60

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           +++RA+++  R++ +  RSL RSLS +KSF ++L  R+    + +L+ R+ K    LPR 
Sbjct: 61  SDMRAWMASERSRGVAARSLARSLSAVKSFYRWLADREGFEPTAVLSTRSPKFQKKLPRP 120

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L    A  ++D V L       WI AR+ A++ LLYGCGLRISEAL L P ++    +TL
Sbjct: 121 LAVDAARAMIDTVQLQA--GEPWIAARDMAVVTLLYGCGLRISEALGLIPADVPL-PATL 177

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKG K R+VP++P+ R A+  Y + CP  ++ +   P+FRG RG PL P   Q  + 
Sbjct: 178 RIIGKGGKERLVPVIPAARTAVNAYLEACPHPMDADQ--PIFRGSRGGPLYPRAIQIVMA 235

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
             R  LGLP + T H +RHSFATHLL+ GGDLRSIQ +LGH  LSTTQ YT V++     
Sbjct: 236 NARMQLGLPATATPHAMRHSFATHLLNAGGDLRSIQELLGHASLSTTQAYTAVDTAR--- 292

Query: 309 WMMEIYDQTHPSITQK 324
            +M++YD  HP    +
Sbjct: 293 -LMKVYDAAHPRAHPR 307


>gi|228916729|ref|ZP_04080294.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228935411|ref|ZP_04098229.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228824163|gb|EEM69977.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228842916|gb|EEM87999.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 296

 Score =  281 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 161/309 (52%), Gaps = 14/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + ++++  + +E+GL+K T+ SYE D + ++ +L    + K    +  +++   I  
Sbjct: 1   MEDQLKDFIHYMVVEKGLAKNTVVSYERDLKSYVKYLQKVEQAK----SFHEVTRLHIVN 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+   +      ++L R ++ I+SF ++L + +       +++   +    LP+ L+  +
Sbjct: 57  FLQHLKENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVNE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L     L T   T     R+ A+L LLY  GLR+SE ++L  +++      +R  GK
Sbjct: 117 VEAL-----LQTPKMTSAFGVRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCVGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G+K RI+PL     +AI +Y +    +L    +   LF    G  L+   F + +++L +
Sbjct: 172 GNKERIIPLGSLATEAIQKYIEKGRRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAK 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + +
Sbjct: 232 EANIEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKD 287

Query: 313 IYDQTHPSI 321
           +Y Q HP  
Sbjct: 288 VYKQFHPRA 296


>gi|149201080|ref|ZP_01878055.1| site-specific tyrosine recombinase XerC [Roseovarius sp. TM1035]
 gi|149145413|gb|EDM33439.1| site-specific tyrosine recombinase XerC [Roseovarius sp. TM1035]
          Length = 306

 Score =  281 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 125/312 (40%), Positives = 186/312 (59%), Gaps = 9/312 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++S         WL   +  +G +  T+ +Y  D   FL F+  +  E   +  + +++ 
Sbjct: 1   MISEAARDALSTWLATQKALKGAAANTIDAYARDVGDFLRFMTLHNGETQGLGALSRITT 60

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           +++RA+++  R   +G RSL R LS +KSF ++L +R+    + +L +R+ K    LPR 
Sbjct: 61  SDMRAWMAHTRGGDVGPRSLARKLSAVKSFYRWLSEREGFEPTAVLAIRSPKFQRKLPRP 120

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+ + A  +++   L     T WI AR+ A++ LLYGCGLRISEALSLT  ++   Q  L
Sbjct: 121 LSPEAASDMINT--LDAQSLTPWIAARDQAVVTLLYGCGLRISEALSLTGADLPLGQ-VL 177

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKG K R+VP++   R A+ +Y  LCP+D+  N   PLF G RG  L+P + Q+ + 
Sbjct: 178 RIIGKGGKERLVPVIEPARAAVAQYARLCPYDIPRNG--PLFLGARGGALSPRLIQKVME 235

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           Q R  LGLP + T H +RHSFATHLL+ GGDLR+IQ +LGH  LSTTQ YT V++     
Sbjct: 236 QARAQLGLPATATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTGVDTAR--- 292

Query: 309 WMMEIYDQTHPS 320
            +ME+Y + HP 
Sbjct: 293 -LMEVYARAHPQ 303


>gi|46908189|ref|YP_014578.1| integrase/recombinase XerD [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47093384|ref|ZP_00231151.1| integrase/recombinase XerD [Listeria monocytogenes str. 4b H7858]
 gi|226224560|ref|YP_002758667.1| integrase/recombinase [Listeria monocytogenes Clip81459]
 gi|254825549|ref|ZP_05230550.1| integrase/recombinase XerD [Listeria monocytogenes FSL J1-194]
 gi|254852857|ref|ZP_05242205.1| integrase/recombinase XerD [Listeria monocytogenes FSL R2-503]
 gi|254931873|ref|ZP_05265232.1| integrase/recombinase XerD [Listeria monocytogenes HPB2262]
 gi|254992940|ref|ZP_05275130.1| integrase/recombinase [Listeria monocytogenes FSL J2-064]
 gi|255520096|ref|ZP_05387333.1| integrase/recombinase [Listeria monocytogenes FSL J1-175]
 gi|300763733|ref|ZP_07073730.1| tyrosine recombinase XerD [Listeria monocytogenes FSL N1-017]
 gi|71153414|sp|Q71Y59|XERD_LISMF RecName: Full=Tyrosine recombinase xerD
 gi|46881459|gb|AAT04755.1| integrase/recombinase XerD [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47018255|gb|EAL09021.1| integrase/recombinase XerD [Listeria monocytogenes str. 4b H7858]
 gi|225877022|emb|CAS05731.1| Putative integrase/recombinase [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
 gi|258606190|gb|EEW18798.1| integrase/recombinase XerD [Listeria monocytogenes FSL R2-503]
 gi|293583424|gb|EFF95456.1| integrase/recombinase XerD [Listeria monocytogenes HPB2262]
 gi|293594790|gb|EFG02551.1| integrase/recombinase XerD [Listeria monocytogenes FSL J1-194]
 gi|300515469|gb|EFK42519.1| tyrosine recombinase XerD [Listeria monocytogenes FSL N1-017]
 gi|328466303|gb|EGF37460.1| tyrosine recombinase xerD [Listeria monocytogenes 1816]
 gi|328472797|gb|EGF43646.1| tyrosine recombinase xerD [Listeria monocytogenes 220]
          Length = 297

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 92/306 (30%), Positives = 155/306 (50%), Gaps = 15/306 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L  L +ERGLS  T+++YE D R F+ ++         +     L  ++I  F++ 
Sbjct: 5   IEDFLHFLIVERGLSANTIKAYERDLRYFVSYMDVAK----GLTDPNTLERSDIVGFMAF 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R +    RS+ R ++ ++SF  YL      +   ++ +   K++  LP+ LN      L
Sbjct: 61  ARQEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVEKL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +      +S  +  +  R+ A++ +LY  GLR++E +SL   ++      ++  GKGDK 
Sbjct: 121 L-----SSSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKE 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           RI+PL  +    + +Y +     L         +F    G+ L    F + ++ + +  G
Sbjct: 176 RIIPLGKTATTVLEKYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESG 235

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT+V        + ++Y 
Sbjct: 236 IEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLR----LKDVYK 291

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 292 QFHPRA 297


>gi|229075797|ref|ZP_04208774.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-18]
 gi|229098560|ref|ZP_04229501.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-29]
 gi|229104696|ref|ZP_04235358.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-28]
 gi|229117586|ref|ZP_04246958.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-3]
 gi|228665906|gb|EEL21376.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-3]
 gi|228678760|gb|EEL32975.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-28]
 gi|228684882|gb|EEL38819.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-29]
 gi|228707349|gb|EEL59545.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-18]
          Length = 296

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 162/309 (52%), Gaps = 14/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + ++++  + +E+GL+K T+ SYE D + ++ +L    +    ++T  +++   I  
Sbjct: 1   MEDQLKDFIHYMIVEKGLAKNTVVSYERDLKSYVKYLQNVEQ----MKTFHEVTRLHIVN 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+   +      ++L R ++ I+SF ++L + +       +++   +    LP+ L+  +
Sbjct: 57  FLQYLKENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSIDE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+      T   T     R+ A+L LLY  GLR+SE ++L  +++      +R  GK
Sbjct: 117 VEALL-----QTPKMTSAFGIRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G+K RI+PL     +AI +Y +    +L    +   LF    G  L+   F + +++L +
Sbjct: 172 GNKERIIPLGSLATEAIQKYIEKGRRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAK 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + +
Sbjct: 232 EANIEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKAR----LKD 287

Query: 313 IYDQTHPSI 321
           +Y Q HP  
Sbjct: 288 VYKQFHPRA 296


>gi|163869253|ref|YP_001610509.1| site-specific tyrosine recombinase XerC [Bartonella tribocorum CIP
           105476]
 gi|161018956|emb|CAK02514.1| integrase/recombinase XerC [Bartonella tribocorum CIP 105476]
          Length = 322

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 144/313 (46%), Positives = 197/313 (62%), Gaps = 9/313 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
            V   +L  R+NWL+ L   R +S  T Q+YE DTRQFL FL  +  +  T+  +  L  
Sbjct: 17  PVDHAVLTARKNWLECLVKTRRMSAQTAQAYERDTRQFLFFLCQHLGQAPTLNDLAHLRV 76

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           +++RA+++ RRT  +  RSL R ++GI+SF KYL +  I        +++ K   SLP+ 
Sbjct: 77  SDLRAYLAYRRTNNVSARSLSRGVAGIRSFFKYLSREGIVNVPAAQLIKSPKHPKSLPKP 136

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQST 187
           L  + AL +V     +      WI+ARN+A+L LLYGCG+RISEALSLTP+     ++++
Sbjct: 137 LAIQSALHIVKQE--NQLENEPWINARNAAVLMLLYGCGMRISEALSLTPEQFSDPEKTS 194

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           L I GKG K R+VPL+  V +A+  Y   CP+ L  N   PLFRG RG PL P + Q+ +
Sbjct: 195 LFITGKGRKTRLVPLIKIVYEAVQNYLKCCPYPLRDNQ--PLFRGARGGPLQPAIIQKTV 252

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           R LR  LGLP + T HTLRHSFATHLLS GGDLR+IQ +LGH  LSTTQ YT+V++    
Sbjct: 253 RNLRASLGLPETATPHTLRHSFATHLLSRGGDLRTIQELLGHASLSTTQTYTHVDT---- 308

Query: 308 DWMMEIYDQTHPS 320
           D ++EIY + HP 
Sbjct: 309 DHLLEIYQKAHPR 321


>gi|229031733|ref|ZP_04187726.1| Tyrosine recombinase xerD [Bacillus cereus AH1271]
 gi|228729617|gb|EEL80604.1| Tyrosine recombinase xerD [Bacillus cereus AH1271]
          Length = 296

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 161/309 (52%), Gaps = 14/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + ++++  + +E+GL+K T+ SYE D + ++ +L    + K    +  +++   I  
Sbjct: 1   MEDQLKDFIHYMVVEKGLAKNTVVSYERDLKSYVKYLQNVEQAK----SFHEVTRLHIVN 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+   +      ++L R ++ I+SF ++L + +       +++   +    LP+ L+  +
Sbjct: 57  FLQHLKENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSIDE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+      T   T     R+ A+L LLY  GLR+SE ++L  ++I      +R  GK
Sbjct: 117 VEALL-----QTPKMTSAFGVRDKAMLELLYATGLRVSELIALNLEDIHLTMGFVRCIGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G+K RI+PL     +AI +Y +    +L    +   LF    G  L+   F + +++L +
Sbjct: 172 GNKERIIPLGSLATEAIQKYIEKGRRELMGKRVVDALFLNHHGNRLSRQGFWKILKRLAK 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + +
Sbjct: 232 EANIEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKAR----LKD 287

Query: 313 IYDQTHPSI 321
           +Y Q HP  
Sbjct: 288 VYKQFHPRA 296


>gi|315127593|ref|YP_004069596.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas sp.
           SM9913]
 gi|315016107|gb|ADT69445.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas sp.
           SM9913]
          Length = 308

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 160/304 (52%), Gaps = 17/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L +L +E+G+S+ TL +Y  D  +F  FL          +++  ++  ++ ++++ 
Sbjct: 22  LETFLDSLYLEQGVSENTLSAYRSDLDKFCQFLKG--------ESLMTVTSLDVESYLAH 73

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R    +  RS  RS+S +K F +Y  + KI ++S ++N+   K   SLP+ L+E +   L
Sbjct: 74  RVDLGLKPRSTARSISALKRFYQYFVREKIISDSPMVNIAQPKAGQSLPKTLSEAEVEAL 133

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +        +  + +  R+ A+L LLY  GLR++E + L  + I   Q+ + ++GKG+K 
Sbjct: 134 L-----SAPNIEEPMGLRDKAMLELLYATGLRVTELVGLRMEQINLRQAVVFVKGKGNKE 188

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VPL       + ++  L    +  +    +F   RG  +    F   I+       + 
Sbjct: 189 RLVPLGEEAMYWLEQFLKLGRAQMIKHATDFVFPSKRGVGMTRQTFWHRIKHYAILASVE 248

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  ++ + 
Sbjct: 249 SPLSPHTLRHAFATHLLNHGADLRVVQMMLGHSDLSTTQIYTHVANER----LKSVHAEH 304

Query: 318 HPSI 321
           HP  
Sbjct: 305 HPRA 308


>gi|99082221|ref|YP_614375.1| site-specific tyrosine recombinase XerC [Ruegeria sp. TM1040]
 gi|99038501|gb|ABF65113.1| phage integrase [Ruegeria sp. TM1040]
          Length = 311

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 130/321 (40%), Positives = 189/321 (58%), Gaps = 10/321 (3%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M   + P ++S       Q WL  L    G +  TL +Y  D  +FL F++ +      +
Sbjct: 1   MSAGD-PTLISPAARDALQRWLDGLGALEGAADNTLAAYRGDVVEFLSFMSLHFGAPQGL 59

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             +RQ++  ++RA+++  R+   G RSL R LS +K F  +L KR+    + +L+ R  K
Sbjct: 60  GALRQITTADMRAWMASARSSGTGARSLARKLSAVKKFYGWLAKREGFEPTAVLSTRAPK 119

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LPR L++  A  ++D V L +  +  W+ AR+ A++ LLYGCGLRISEAL L  ++
Sbjct: 120 FQKKLPRPLDQDAARAMIDTVELQS--QKDWVSARDVAVVTLLYGCGLRISEALGLLGKD 177

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                +TLRI+GKG K R+VP+LP+ ++A+  Y  LCP     +  LPLFRG+RG  L+ 
Sbjct: 178 APL-PATLRIKGKGGKERVVPVLPAAQQAVERYLALCPHPKEAH--LPLFRGVRGGALHA 234

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            + Q  +   RR LGLP + T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ YT 
Sbjct: 235 RMIQGVMAGARRQLGLPATATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTA 294

Query: 301 VNSKNGGDWMMEIYDQTHPSI 321
           V++ +    +ME+Y + HP  
Sbjct: 295 VDTAH----LMEVYARAHPKA 311


>gi|229543943|ref|ZP_04433002.1| tyrosine recombinase XerD [Bacillus coagulans 36D1]
 gi|229325082|gb|EEN90758.1| tyrosine recombinase XerD [Bacillus coagulans 36D1]
          Length = 297

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 85/310 (27%), Positives = 156/310 (50%), Gaps = 15/310 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + ++++  + +E+GL++ T+ SY+ D   +L +L         + +  +++   I  
Sbjct: 1   MEDQIKDFMHFMIVEKGLAENTIASYKRDLHSYLRYLQKVEL----VTSWNEVTRFHILH 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F++  + Q    +++ R ++ I+SF ++L + K   +   +++   K   +LP+ L+ ++
Sbjct: 57  FLNFLKQQGKSSKTIARHVASIRSFHQFLLREKFAGQDPTVHIETPKPERTLPKVLSVQE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L     L        +  R+ A+L LLY  G+R+SE   L   ++      ++  GK
Sbjct: 117 VEAL-----LAAPKGDTPLHMRDGAMLELLYATGMRVSEMTGLNLDDLHLSMGFIKCIGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GDK RI+P+  +   A+  Y       L    N    LF    G  L+   F + ++ L 
Sbjct: 172 GDKERIIPIGRTASAALERYLKEGRPKLVSKTNRTDALFLNHHGARLSRQGFWKILKALA 231

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +   +    T HTLRHSFATHL+ NG DLR++Q +LGH  +STTQIYT+V+       + 
Sbjct: 232 KKANIEKDITPHTLRHSFATHLIENGADLRAVQEMLGHADISTTQIYTHVSKTR----LK 287

Query: 312 EIYDQTHPSI 321
           ++Y + HP  
Sbjct: 288 DVYAKFHPRA 297


>gi|114566153|ref|YP_753307.1| recombinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114337088|gb|ABI67936.1| tyrosine recombinase XerD subunit [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 296

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 97/304 (31%), Positives = 155/304 (50%), Gaps = 14/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            ++++  L  E+GL+  +  +Y+ D  +F  FL    +E     + + +S  +I AF++ 
Sbjct: 5   IEDFISYLNFEKGLAANSRIAYKRDLLKFQQFL----QENSRALSPQNISKHDIMAFLAW 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +  Q     S+ RSLS IKS+ K+L       ++   ++   K    LP+ L+ ++   L
Sbjct: 61  QLDQGAAHSSIARSLSSIKSYYKFLILEGELDKNPSSDLETPKIKRKLPQVLSIEEVDKL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++       +    +  R+ A+L L+YG G+R+SE LSL  +++      LR  GKG K 
Sbjct: 121 MEQ-----PNPVVPLGIRDRAMLELMYGTGIRVSELLSLQVEDLNPTAGFLRCMGKGRKE 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RI+P+  +    +  Y       L  N  +  LF   RG+PL+   F + +        L
Sbjct: 176 RIIPVNQTSIDWVQRYLARVRNSLVKNPLERTLFLNARGRPLSRQGFFKILGNYVEKAEL 235

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT++        + E+Y Q
Sbjct: 236 EKEVTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHLTKSR----LREVYQQ 291

Query: 317 THPS 320
            HP 
Sbjct: 292 YHPR 295


>gi|152976499|ref|YP_001376016.1| site-specific tyrosine recombinase XerD [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025251|gb|ABS23021.1| tyrosine recombinase XerD [Bacillus cytotoxicus NVH 391-98]
          Length = 296

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 161/309 (52%), Gaps = 14/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + ++++  + +E+GL+K T+ SYE D + ++ +L    +    ++T  +++  +I  
Sbjct: 1   MEDQLKDFIHYMVVEKGLAKNTVVSYERDLKSYVKYLQKVEQ----MKTFHEVTRMQIVN 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+   R      ++L R ++ I+SF ++L + +       +++   +    LP+ L+  +
Sbjct: 57  FLQHLRENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVSE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+      T   T     R+ A+L LLY  GLR+SE ++L  +++      +R  GK
Sbjct: 117 VEALL-----QTPKTTSAYGIRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCVGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G+K RI+PL     +AI  Y +    +L        LF    G  L+   F + +++L +
Sbjct: 172 GNKERIIPLGSLATEAIQRYIEKGRKELMGKKAVDALFLNHHGNRLSRQGFWKILKRLAK 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + +
Sbjct: 232 EANIEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKD 287

Query: 313 IYDQTHPSI 321
           +Y Q HP  
Sbjct: 288 VYKQFHPRA 296


>gi|332312396|gb|EGJ25491.1| Tyrosine recombinase xerD [Listeria monocytogenes str. Scott A]
          Length = 302

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 92/306 (30%), Positives = 155/306 (50%), Gaps = 15/306 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L  L +ERGLS  T+++YE D R F+ ++         +     L  ++I  F++ 
Sbjct: 10  IEDFLHFLIVERGLSANTIKAYERDLRYFVSYMDVAK----GLTDPNTLERSDIVGFMAF 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R +    RS+ R ++ ++SF  YL      +   ++ +   K++  LP+ LN      L
Sbjct: 66  ARQEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVEKL 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +      +S  +  +  R+ A++ +LY  GLR++E +SL   ++      ++  GKGDK 
Sbjct: 126 L-----SSSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKE 180

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           RI+PL  +    + +Y +     L         +F    G+ L    F + ++ + +  G
Sbjct: 181 RIIPLGKTATTVLEKYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESG 240

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT+V        + ++Y 
Sbjct: 241 IEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLR----LKDVYK 296

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 297 QFHPRA 302


>gi|254831444|ref|ZP_05236099.1| hypothetical protein Lmon1_08823 [Listeria monocytogenes 10403S]
 gi|284802400|ref|YP_003414265.1| hypothetical protein LM5578_2156 [Listeria monocytogenes 08-5578]
 gi|284995542|ref|YP_003417310.1| hypothetical protein LM5923_2107 [Listeria monocytogenes 08-5923]
 gi|284057962|gb|ADB68903.1| hypothetical protein LM5578_2156 [Listeria monocytogenes 08-5578]
 gi|284061009|gb|ADB71948.1| hypothetical protein LM5923_2107 [Listeria monocytogenes 08-5923]
          Length = 297

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 93/306 (30%), Positives = 155/306 (50%), Gaps = 15/306 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L  L +ERGLS  T+++YE D   F+ ++    E    +     L  ++I  F++ 
Sbjct: 5   IEDFLHFLIVERGLSANTIKAYERDLHYFVSYMDVTKE----LTDPNTLERSDIVGFMAF 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R +    RS+ R ++ ++SF  YL      +   ++ +   K++  LP+ LN      L
Sbjct: 61  ARQEGKSPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAKGLPKVLNLDDVEKL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L +S  +  +  R+ A++ +LY  GLR++E +SL   ++      ++  GKGDK 
Sbjct: 121 -----LSSSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKE 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           RI+PL  +    + +Y +     L         +F    G+ L    F + ++ + +  G
Sbjct: 176 RIIPLGKTATTVLEKYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESG 235

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT+V        + ++Y 
Sbjct: 236 IEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLR----LKDVYK 291

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 292 QFHPRA 297


>gi|254454192|ref|ZP_05067629.1| tyrosine recombinase XerC [Octadecabacter antarcticus 238]
 gi|198268598|gb|EDY92868.1| tyrosine recombinase XerC [Octadecabacter antarcticus 238]
          Length = 301

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 129/302 (42%), Positives = 180/302 (59%), Gaps = 9/302 (2%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +WL +     G +  T+ +Y+ D   FL F+  Y  E   +  I +++ +++RA+++  R
Sbjct: 7   DWLDHQRALNGAAANTITAYQTDLLGFLNFMTTYHGEAQGLGPISRITVSDMRAWMASER 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +  RSL RSLS +KSF ++L  R+    + +L+ R+ K    LPR L    A  ++D
Sbjct: 67  GRGVAARSLARSLSAVKSFYRWLADREGFEPTAVLSTRSPKFQKKLPRPLAVDGARAMID 126

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            V L       WI AR+ A++ LLYGCGLRISEAL LTP ++    +TLRI GKG K R+
Sbjct: 127 TVELQA--REPWIAARDVAVVTLLYGCGLRISEALGLTPTDVPL-PATLRIIGKGGKERL 183

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VP++P+ R A+  Y D CP  L  +   P+FRG RG PL P   Q  +   R  LGLP +
Sbjct: 184 VPVIPAARAAVNAYLDACPHQLTADQ--PIFRGSRGGPLYPKAIQNVMASSRMQLGLPAT 241

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T H +RHSFATHLL+ GGDLRSIQ +LGH  LSTTQ YT V++      +ME+YD  HP
Sbjct: 242 ATPHAMRHSFATHLLNAGGDLRSIQELLGHASLSTTQSYTAVDTAR----LMEVYDAAHP 297

Query: 320 SI 321
             
Sbjct: 298 RA 299


>gi|326692503|ref|ZP_08229508.1| tyrosine recombinase XerD [Leuconostoc argentinum KCTC 3773]
          Length = 298

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 95/306 (31%), Positives = 158/306 (51%), Gaps = 16/306 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
              ++L  + IERGLS  T+ SY  D  QF  +L   T EK+T++ +  +    + A+++
Sbjct: 8   AIADYLHYIRIERGLSDNTINSYRQDLTQFGAYL---TAEKLTLEAVDHV---VVLAWLN 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           + R     + S+ R ++ ++ F  YL + KI   + + +++  KK+  LP  L+  +   
Sbjct: 62  QLRLVGKSNNSVIRMVTSLRKFFGYLAQEKIVLPNPMRDIQPPKKATHLPAVLSVAEIDA 121

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+         +T  +D RN  ++ ++Y  GLR+SE ++L   ++      ++  GKGDK
Sbjct: 122 LL-----AVPTDTTPLDIRNRTLIEVMYATGLRVSELVNLKLSDLHLQLGLIQTIGKGDK 176

Query: 197 IRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            RI+P+       +  Y+       L       +F   RG  L      + I++L    G
Sbjct: 177 ERIIPIGEVAADWLTRYFASSRLALLKGKASPYVFLNDRGGQLTRQGVWKIIKKLVVEAG 236

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + HTLRHSFATH+L NG DLR +Q +LGH  +STTQIYT+++ K     + E+YD
Sbjct: 237 ITKDVSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKR----LSEVYD 292

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 293 QYHPRA 298


>gi|227823634|ref|YP_002827607.1| site-specific tyrosine recombinase XerC [Sinorhizobium fredii
           NGR234]
 gi|227342636|gb|ACP26854.1| tyrosine recombinase XerC [Sinorhizobium fredii NGR234]
          Length = 310

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 147/318 (46%), Positives = 199/318 (62%), Gaps = 9/318 (2%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N L  I   E++ ER  WL +L  ER LS+ T+++YE DTRQFL FL  +      +  I
Sbjct: 2   NELLVIGHPEVMAERHRWLASLAEERRLSEKTIEAYERDTRQFLTFLTGHLAGPPRLADI 61

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           R L   ++R F+++RR    G R+L R L+G++SFL+YL+K  +   +    +R+ K+  
Sbjct: 62  RTLRPADLRGFLAQRRKAGAGARTLGRGLAGLRSFLRYLEKHGLANAAGAGAVRSPKQPK 121

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           SLP+ L ++ AL +V         E  WI ARN+A+L LLYGCGLRISEAL LTP +   
Sbjct: 122 SLPKPLTDRDALEVVTAD--AQLAEEPWIAARNAAVLTLLYGCGLRISEALDLTPDDFS- 178

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
             ++LRI GKG K RIVPL+ +   A+  Y  LCP+ +      P+FRG RG  L P + 
Sbjct: 179 GAASLRITGKGGKTRIVPLIAAATGAVATYRKLCPYHIGPGE--PIFRGARGAKLQPAII 236

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           QR +++LR  LGLP S T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ+YT V+S
Sbjct: 237 QREMQKLRSALGLPDSATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDS 296

Query: 304 KNGGDWMMEIYDQTHPSI 321
                 ++EIYD+ HP  
Sbjct: 297 AR----LLEIYDRAHPRA 310


>gi|307316349|ref|ZP_07595793.1| integrase family protein [Sinorhizobium meliloti AK83]
 gi|306898189|gb|EFN28931.1| integrase family protein [Sinorhizobium meliloti AK83]
          Length = 330

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 142/318 (44%), Positives = 201/318 (63%), Gaps = 8/318 (2%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N L  I   E++ ER+ WL +L  ER LS+ T+ +YE DTRQFL FL  +      +  I
Sbjct: 21  NELLAIGHPEVMAERRRWLASLAEERRLSEKTVDAYERDTRQFLTFLTGHLAGPPRLSDI 80

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
             L   ++R F+++RR    G R+L R L+G++SFL+YL++  +   +    +R+ K+  
Sbjct: 81  CALRPADLRGFLAQRRKGGAGARTLGRGLAGLRSFLRYLERNGLANAAGAGAVRSPKQPK 140

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           SLP+AL +++AL +V         E  WI ARN+A+L LLYGCGLRI+EAL L P +   
Sbjct: 141 SLPKALTDREALKVVTAD--AQLAEEPWIAARNAAVLTLLYGCGLRIAEALDLIPADFSG 198

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
             ++LR+ GKG K RIVP++ +  +A+  Y  LCP+ +    + P+FRG RG  L P + 
Sbjct: 199 PVTSLRVTGKGGKTRIVPMIAAAAEAVETYRKLCPYHIE--PEEPIFRGARGAKLQPAII 256

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           QR +++LR  LGLP S T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ+YT V+S
Sbjct: 257 QREMQKLRAALGLPDSATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDS 316

Query: 304 KNGGDWMMEIYDQTHPSI 321
                 ++EIYD+ HP  
Sbjct: 317 AR----LLEIYDRAHPRA 330


>gi|254475428|ref|ZP_05088814.1| tyrosine recombinase XerC [Ruegeria sp. R11]
 gi|214029671|gb|EEB70506.1| tyrosine recombinase XerC [Ruegeria sp. R11]
          Length = 305

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 127/313 (40%), Positives = 185/313 (59%), Gaps = 9/313 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++S       ++WL +L   R  +  TL +Y  D   FL F+  +      +  + +++ 
Sbjct: 2   MISPACRDALEHWLAHLGGLRDAADNTLTAYRGDVVDFLAFMTQHFGSPQGLGALAEITT 61

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++RA+++  R    G RSL R LS +KSF  +L +R+    + +L+ R+ K    LPR 
Sbjct: 62  GDMRAWMAATRAGGTGARSLARKLSAVKSFYTWLAERQGFEATAVLSARSPKFQKKLPRP 121

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L E  A  +++ V   ++  + W+ AR+ A++ +LYGCGLRISEAL LT  +     + L
Sbjct: 122 LAEDAAKAMIETVEYQST--SDWVAARDVAVVTVLYGCGLRISEALGLTGGDAPL-PAVL 178

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKG K RIVP+LP+ R A+  Y DLCP     N   PLFRG+RG PLN  + ++ + 
Sbjct: 179 RITGKGGKERIVPVLPAARAAVDRYLDLCPHPQETNA--PLFRGVRGGPLNASIIRKAMA 236

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           Q R  LGLP + T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ YT V++ +   
Sbjct: 237 QARAQLGLPATATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAH--- 293

Query: 309 WMMEIYDQTHPSI 321
            +ME+Y++ HP  
Sbjct: 294 -LMEVYNRAHPKA 305


>gi|229019302|ref|ZP_04176128.1| Tyrosine recombinase xerD [Bacillus cereus AH1273]
 gi|229025548|ref|ZP_04181956.1| Tyrosine recombinase xerD [Bacillus cereus AH1272]
 gi|228735730|gb|EEL86317.1| Tyrosine recombinase xerD [Bacillus cereus AH1272]
 gi|228741987|gb|EEL92161.1| Tyrosine recombinase xerD [Bacillus cereus AH1273]
          Length = 296

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 159/309 (51%), Gaps = 14/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + ++++  + +E+GL+K T+ SYE D + ++ +L    + K    T  +++   I  
Sbjct: 1   MEDQLKDFIHYMIVEKGLAKNTVVSYERDLKSYVKYLQNVEQTK----TFHEVTRIHIVN 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+   +      ++L R ++ I+SF ++L + +       +++   +    LP+ L+  +
Sbjct: 57  FLQYLKENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSIDE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+      T         R+ A+L LLY  GLR+SE ++L  +++      +R  GK
Sbjct: 117 VEALL-----QTPKAVSAFGIRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G+K RI+PL     +AI +Y +    +L        LF    G  L+   F + +++L +
Sbjct: 172 GNKERIIPLGSLATEAIQKYIEKGRRELMGKKAVDALFLNHHGNRLSRQGFWKILKRLAK 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + +
Sbjct: 232 EANIEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKAR----LKD 287

Query: 313 IYDQTHPSI 321
           +Y Q HP  
Sbjct: 288 VYKQFHPRA 296


>gi|323702534|ref|ZP_08114197.1| tyrosine recombinase XerD [Desulfotomaculum nigrificans DSM 574]
 gi|323532508|gb|EGB22384.1| tyrosine recombinase XerD [Desulfotomaculum nigrificans DSM 574]
          Length = 296

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 96/310 (30%), Positives = 149/310 (48%), Gaps = 16/310 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +  Q ++  L +ERGL++ TL SY  D  Q+L  L     +K  +  I Q +   +  
Sbjct: 1   MERWLQEFIHYLAVERGLAQNTLASYRIDLSQYLSHL-----KKQGVTAIDQANRNHVLT 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            + K +       ++ R L+ +K F ++L    + TE   +N+ + K    LP+ L   +
Sbjct: 56  HLYKLQKSGKAPATISRHLAALKHFYRFLLADGVVTEDPTVNLESPKLGQRLPQVLTTAE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+    L           R+ A+L L+Y  G+R+SE ++L  +++  D   +R  GK
Sbjct: 116 VEALLSQPQLADPA-----GLRDKAMLELIYATGIRVSEMVTLDIEHVELDMGYIRCFGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G K RI+PL       + EY       L         LF   +GK L    F + +++  
Sbjct: 171 GSKERIIPLGAVAAHYVREYLARSRVKLTKGKTEHRALFVNAQGKRLTRQGFWKILKKYA 230

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R   +    T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT++        + 
Sbjct: 231 REANINKHITPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHLT----KIRLR 286

Query: 312 EIYDQTHPSI 321
           E+Y   HP  
Sbjct: 287 EVYTNAHPRA 296


>gi|149181661|ref|ZP_01860154.1| site-specific tyrosine recombinase XerD [Bacillus sp. SG-1]
 gi|148850639|gb|EDL64796.1| site-specific tyrosine recombinase XerD [Bacillus sp. SG-1]
          Length = 297

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 87/306 (28%), Positives = 158/306 (51%), Gaps = 15/306 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q+++  L +E+GL+K ++ SY+ D + ++ F+        + ++   +    I  F+  
Sbjct: 5   LQDYIHFLIVEKGLAKNSVDSYQRDLKNYMKFIQNVD----SAESWNDVQRVNITGFLGH 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            + +    +++ R ++ I+SF ++L + K+T +   +++ + K   SLP+ L+  +   L
Sbjct: 61  LKNEGKSAKTVARHVASIRSFHQFLLREKVTDQDPSIHIESPKMERSLPKVLSIDEVEAL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++        E+  +  R+ A+L +LY  G+R+SE + L   ++      +R  GKG+K 
Sbjct: 121 LE-----APQESSALGIRDKAMLEVLYATGIRVSELIRLKMDDVHLKMGFVRCIGKGNKE 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           RI+P+  +    + +Y       L    +    LF    GK L+   F + ++ L     
Sbjct: 176 RIIPIGKAAITVLEKYLLEGRPKLVSKKHKDDSLFLNHHGKGLSRQGFWKILKGLAAEAK 235

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        M ++Y 
Sbjct: 236 ITKELTPHTLRHSFATHLLENGADLRAVQEMLGHVDISTTQIYTHVTKTR----MKDVYS 291

Query: 316 QTHPSI 321
           + HP  
Sbjct: 292 KFHPRA 297


>gi|56420850|ref|YP_148168.1| site-specific tyrosine recombinase XerD [Geobacillus kaustophilus
           HTA426]
 gi|56380692|dbj|BAD76600.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
          Length = 298

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 92/308 (29%), Positives = 155/308 (50%), Gaps = 16/308 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E +++L  L +ER L+  T+ SYE D ++++ +L    +    +Q   ++    I  F+ 
Sbjct: 4   ELKDFLHYLTVERNLAHNTIVSYERDLKKYVRYLRQVEQ----LQAWGEVERLHILHFLK 59

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               Q    R++ R L+ I+SF ++L + KI  +   +++   +   +LP+ L+ ++   
Sbjct: 60  FLSEQGQSARTIARHLASIRSFHQFLLREKIAAQDPTVHIETPQFERTLPKVLSVEEVEA 119

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+          +     R+ A+L LLY  G+R+SE + L   ++      +R  GKG K
Sbjct: 120 LL-----AAPQVSTPFGLRDKAMLELLYATGMRVSELVQLNLSDVHLTMGFVRCYGKGRK 174

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            RIVP+     +A+  Y +     L          LF    G+ L    F + +++L + 
Sbjct: 175 ERIVPIGRMAIEALAHYLERGRPQLVNPRRRATEALFLNHYGQRLTRQGFWKILKRLAKE 234

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V        + ++
Sbjct: 235 AGIEKELTPHTLRHSFATHLLENGADLRAVQELLGHADISTTQMYTHVTKTR----LKDV 290

Query: 314 YDQTHPSI 321
           Y Q HP  
Sbjct: 291 YKQYHPRA 298


>gi|332534749|ref|ZP_08410577.1| site-specific recombinase XerD [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332035836|gb|EGI72320.1| site-specific recombinase XerD [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 308

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 90/304 (29%), Positives = 160/304 (52%), Gaps = 17/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L +L +E+G+S+ TL +Y  D  +F +FL          + +  ++  +I ++++ 
Sbjct: 22  LETFLDSLYLEQGVSENTLSAYRSDLDKFCLFLKG--------ENLMTVTGLDIESYLAH 73

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R    +  RS  RS+S +K F +Y  + KI ++S +LN+   K   SLP+ L+E +   L
Sbjct: 74  RVDLGLKPRSTARSISALKRFYQYFVREKIISDSPMLNIAQPKAGQSLPKTLSEAEVEAL 133

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +     +  +  + +  R+ A+L LLY  GLR+SE + L  + I   Q+ + ++GKG+K 
Sbjct: 134 L-----NAPNTEEAMGLRDKAMLELLYATGLRVSELVGLRMEQINLRQAVVFVKGKGNKE 188

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VPL       + ++       +  +    +F   RG  +    F   I+       + 
Sbjct: 189 RLVPLGEEAMYWLEQFLKGGRAQMIKHATDFVFPSKRGVGMTRQTFWHRIKHYAILASVE 248

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + HT+RH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  ++ + 
Sbjct: 249 SPLSPHTMRHAFATHLLNHGADLRVVQMMLGHSDLSTTQIYTHVANER----LKSVHAEH 304

Query: 318 HPSI 321
           HP  
Sbjct: 305 HPRA 308


>gi|119470495|ref|ZP_01613198.1| site-specific tyrosine recombinase XerD [Alteromonadales bacterium
           TW-7]
 gi|119446196|gb|EAW27473.1| site-specific tyrosine recombinase XerD [Alteromonadales bacterium
           TW-7]
          Length = 308

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 92/304 (30%), Positives = 159/304 (52%), Gaps = 17/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L +L +E+G+S+ TL +Y  D  +F  FL          + +  ++  +I ++++ 
Sbjct: 22  LETFLDSLYLEQGVSENTLSAYRSDLDKFCQFLKG--------ENLMTVTGHDIESYLAH 73

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R    +  RS  RS+S +K F +Y  + K+ T++ +LN+   K   SLP+ L+E +   L
Sbjct: 74  RVDLGLKPRSTARSISALKRFYQYFVREKMITDTPMLNIAQPKAGQSLPKTLSETEVEAL 133

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L+  +  + +  R+ A+L LLY  GLR+SE + L  + I   Q+ + ++GKG+K 
Sbjct: 134 -----LNAPNTEEPMGLRDKAMLELLYATGLRVSELVGLRMEQINLRQAVVFVKGKGNKE 188

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VPL       +  +  +    +  +    +F   RG  +    F   I+       + 
Sbjct: 189 RLVPLGEEAMHWLELFLKVGRAQMIKHATDFVFPSKRGVGMTRQTFWHRIKHYAILASVE 248

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  ++ Q 
Sbjct: 249 SPLSPHTLRHAFATHLLNHGADLRVVQMMLGHSDLSTTQIYTHVANER----LKSVHAQH 304

Query: 318 HPSI 321
           HP  
Sbjct: 305 HPRA 308


>gi|134299829|ref|YP_001113325.1| tyrosine recombinase XerC [Desulfotomaculum reducens MI-1]
 gi|134052529|gb|ABO50500.1| tyrosine recombinase XerC subunit [Desulfotomaculum reducens MI-1]
          Length = 298

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 161/304 (52%), Gaps = 10/304 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             N++  L++++  S  T+++Y+ D    L + +    + I       ++ + +R F++ 
Sbjct: 5   IDNFVNYLKVQKNFSIHTIEAYQKDLFDGLDYFSIVLNKPIEKMDHASINSSLVREFLAY 64

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R + +   ++ R L+  ++F K+L   ++   + +L + N K+   LP+ L +++   L
Sbjct: 65  LRQKNLSRATVARKLASWRAFFKFLYNERLAYTNPMLRVANPKREKRLPKFLYQEETKQL 124

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           V+      + +   +  R+ A+L LLY  G+R+SE ++L   NI   +  +R+ GKG K 
Sbjct: 125 VE------APDHSPLGIRDRALLELLYATGIRVSELVALDLSNIDLARGYIRVMGKGSKE 178

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VP   S   A+ EY       + +     +F   +G  L+    ++ + +  + LG+ 
Sbjct: 179 RVVPFHQSAVAAMKEYCRNARPKMVIKDCEAVFVNYKGTRLSDRGIRKIVDKYCQRLGMK 238

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           L+ + HT+RHSFATHLL NG DLRS+Q +LGH  LSTTQIYT+V  K     +  +Y  +
Sbjct: 239 LNVSPHTIRHSFATHLLDNGADLRSVQELLGHVSLSTTQIYTHVTKK----KIKRVYKMS 294

Query: 318 HPSI 321
           HP  
Sbjct: 295 HPRA 298


>gi|229168834|ref|ZP_04296553.1| Tyrosine recombinase xerD [Bacillus cereus AH621]
 gi|228614682|gb|EEK71788.1| Tyrosine recombinase xerD [Bacillus cereus AH621]
          Length = 296

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 159/309 (51%), Gaps = 14/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + ++++  + +E+GL+K T+ SYE D + ++ +L    + K    T  +++   I  
Sbjct: 1   MEDQLKDFIHYMIVEKGLAKNTVVSYERDLKSYVKYLQNVEQTK----TFHEVTRLHIVN 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+   +      ++L R ++ I+SF ++L + +       +++   +    LP+ L+  +
Sbjct: 57  FLQHLKENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSIDE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+      T         R+ A+L LLY  GLR+SE ++L  +++      +R  GK
Sbjct: 117 VEALL-----QTPKTASAFGIRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G+K RI+PL     +AI +Y +    +L        LF    G  L+   F + +++L +
Sbjct: 172 GNKERIIPLGSLATEAIQKYIEKGRRELMGKKAVDALFLNHHGNRLSRQGFWKILKRLAK 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + +
Sbjct: 232 EANIAKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKAR----LKD 287

Query: 313 IYDQTHPSI 321
           +Y Q HP  
Sbjct: 288 VYKQFHPRA 296


>gi|319651425|ref|ZP_08005554.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2]
 gi|317396956|gb|EFV77665.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2]
          Length = 297

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 99/310 (31%), Positives = 168/310 (54%), Gaps = 15/310 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + ++++  L +E+GL+K T+ SYE D + +L +L   +EEKI+  ++  +  T+I  
Sbjct: 1   MDDQLRDFIHYLLVEKGLAKNTIVSYERDLKSYLKYLK--SEEKIS--SLESVQRTQIVQ 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+   + Q    ++L R ++ I++F ++L + K       +++   +   SLP+ LN ++
Sbjct: 57  FLGFLKKQGKSSKTLARHIASIRAFHQFLLREKAVGHDPSVHIETPQMERSLPKVLNMQE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
             TL+D               R+ A+L LLY  G+R+SE + L   ++      +R  GK
Sbjct: 117 VETLLDF-----PEIKDHFGLRDKAMLELLYATGIRVSELIGLNIGDVHLTMGFVRCIGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G+K RIVP+  +  +A+ +Y +     F    +    LF    GK L+   F + +++L 
Sbjct: 172 GNKERIVPIGKTASEALEKYLNEGRGKFAPKKHKDEALFLNHHGKRLSRQGFWKILKRLA 231

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +  G+    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        + 
Sbjct: 232 QEAGIEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----LK 287

Query: 312 EIYDQTHPSI 321
           ++Y Q HP  
Sbjct: 288 DVYSQYHPRA 297


>gi|300173433|ref|YP_003772599.1| tyrosine recombinase XerD [Leuconostoc gasicomitatum LMG 18811]
 gi|299887812|emb|CBL91780.1| tyrosine recombinase XerD [Leuconostoc gasicomitatum LMG 18811]
          Length = 298

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 95/313 (30%), Positives = 163/313 (52%), Gaps = 16/313 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++ ++     ++L  + IERGLS  T++SY  D +QF +++   T EK+ +  I  ++  
Sbjct: 1   MTHKIDSAIADYLHYIRIERGLSDNTIKSYHQDLQQFALYV---TTEKLQLNDIDHIA-- 55

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            I  +++  R Q   + S+ R ++ ++ F  YL +  +   + + ++R  KK+  LP  L
Sbjct: 56  -ILTWLNNLREQGKSNNSVIRMVTSLRKFFGYLLQEGLILHNPMTDVRPPKKAEHLPSVL 114

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              +   L+         ET  +  RN  ++ +LY  GLR+SE ++L   ++      ++
Sbjct: 115 TVAEIDALL-----AVPTETTPLGVRNRTLIEVLYATGLRVSELVNLKMSDLHLQLGLIQ 169

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
             GKGDK RI+P+       + +Y+ +     L  N    +F   RG  L+     + I+
Sbjct: 170 TIGKGDKERIIPIGEVAADWLEKYFSNSRLLLLKGNESPFVFLNDRGNQLSRQGVWKIIK 229

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L    G+    + HTLRHSFATH+L NG DLR +Q +LGH  +STTQIYT+++ K    
Sbjct: 230 KLVLLAGITKDVSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKR--- 286

Query: 309 WMMEIYDQTHPSI 321
            + E+YD  HP  
Sbjct: 287 -LSEVYDNFHPRA 298


>gi|316931849|ref|YP_004106831.1| integrase family protein [Rhodopseudomonas palustris DX-1]
 gi|315599563|gb|ADU42098.1| integrase family protein [Rhodopseudomonas palustris DX-1]
          Length = 323

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 131/314 (41%), Positives = 188/314 (59%), Gaps = 8/314 (2%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            + +L  E   WL +L  ER LS  TL++Y  D RQFL FLA +   ++T+    +L  T
Sbjct: 16  AAADLTAEMAKWLSHLRAERRLSGKTLEAYARDVRQFLQFLAGHWGGEVTLGRFARLEAT 75

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++RAF++ RR   I  RSL R+L+G++SF ++L++        + ++R  K   SLP+ L
Sbjct: 76  DVRAFMAARRADDIAGRSLMRALAGLRSFGRFLEREGKGRVGALASVRAPKIRKSLPKPL 135

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQST 187
               A  L D           W+  R++A++ LLYG GLRISEAL L  +++       T
Sbjct: 136 PIAAAKRLADADERAGEERETWVLIRDAAVMALLYGSGLRISEALGLKRRDVPAPGKGDT 195

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           L + GKG+K R+VP+L +V + I EY   CP+  NL    P+F G RG PL+P + Q  +
Sbjct: 196 LIVHGKGNKTRMVPVLQNVLEQIAEYAAACPY--NLPPDGPMFVGARGGPLSPRIIQLAM 253

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +LR  LGLP S T H LRHSFATHLLS GGDLR+IQ +LGH  LSTTQ+YT ++++   
Sbjct: 254 ERLRGGLGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYTGIDTER-- 311

Query: 308 DWMMEIYDQTHPSI 321
             ++E+Y+  HP  
Sbjct: 312 --LLEVYNSAHPRA 323


>gi|150398130|ref|YP_001328597.1| site-specific tyrosine recombinase XerC [Sinorhizobium medicae
           WSM419]
 gi|150029645|gb|ABR61762.1| phage integrase family protein [Sinorhizobium medicae WSM419]
          Length = 313

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 146/321 (45%), Positives = 201/321 (62%), Gaps = 8/321 (2%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M  N L  I   E++ ER+ WL +L  ER LS  T+++YE DTRQFL FL  +      +
Sbjct: 1   MLMNELLIIGHPEVMAERKRWLASLAEERRLSGKTVEAYERDTRQFLTFLTGHLAGPPRL 60

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             IR L   ++R F+++RR    G R+L R L+G++SFL+YL+K  +   +    +R+ K
Sbjct: 61  SDIRALRPADLRGFLAQRRKGGAGARTLGRGLAGLRSFLRYLEKNGLANAAGAGAVRSPK 120

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +  SLP+ L ++ AL +V         E  WI ARN+A+L LLYGCGLRI+EAL LTP +
Sbjct: 121 QPKSLPKPLTDRDALKVVTTD--SQLAEEPWIAARNAAVLTLLYGCGLRIAEALDLTPAD 178

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
             +   +LR+ GKG K RIVPL+ +  +A+  Y  LCP+ +      P+FRG RG  L P
Sbjct: 179 FTETARSLRVTGKGGKTRIVPLIAAAAEAVTTYRKLCPYHIEAGE--PIFRGARGAKLQP 236

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            + QR +++LR  LGLP S T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ+YT 
Sbjct: 237 AIIQREMQKLRSALGLPDSATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTG 296

Query: 301 VNSKNGGDWMMEIYDQTHPSI 321
           V+S      ++EIYD+ HP  
Sbjct: 297 VDSAR----LLEIYDRAHPRA 313


>gi|16803994|ref|NP_465479.1| hypothetical protein lmo1955 [Listeria monocytogenes EGD-e]
 gi|47097098|ref|ZP_00234668.1| integrase/recombinase XerD [Listeria monocytogenes str. 1/2a F6854]
 gi|224498595|ref|ZP_03666944.1| hypothetical protein LmonF1_02414 [Listeria monocytogenes Finland
           1988]
 gi|224501245|ref|ZP_03669552.1| hypothetical protein LmonFR_01770 [Listeria monocytogenes FSL
           R2-561]
 gi|254827160|ref|ZP_05231847.1| integrase/recombinase XerD [Listeria monocytogenes FSL N3-165]
 gi|254899348|ref|ZP_05259272.1| hypothetical protein LmonJ_06029 [Listeria monocytogenes J0161]
 gi|254912513|ref|ZP_05262525.1| tyrosine recombinase XerD [Listeria monocytogenes J2818]
 gi|254936840|ref|ZP_05268537.1| integrase/recombinase XerD [Listeria monocytogenes F6900]
 gi|255028942|ref|ZP_05300893.1| hypothetical protein LmonL_06711 [Listeria monocytogenes LO28]
 gi|34222939|sp|Q8Y5V0|XERD_LISMO RecName: Full=Tyrosine recombinase xerD
 gi|16411408|emb|CAD00033.1| lmo1955 [Listeria monocytogenes EGD-e]
 gi|47014543|gb|EAL05506.1| integrase/recombinase XerD [Listeria monocytogenes str. 1/2a F6854]
 gi|258599542|gb|EEW12867.1| integrase/recombinase XerD [Listeria monocytogenes FSL N3-165]
 gi|258609436|gb|EEW22044.1| integrase/recombinase XerD [Listeria monocytogenes F6900]
 gi|293590498|gb|EFF98832.1| tyrosine recombinase XerD [Listeria monocytogenes J2818]
          Length = 297

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 92/306 (30%), Positives = 155/306 (50%), Gaps = 15/306 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L  L +ERGLS  T+++YE D   F+ ++    E    +     L  ++I  F++ 
Sbjct: 5   IEDFLHFLIVERGLSANTIKAYERDLHYFVSYMDVTKE----LTDPNTLERSDIVGFMAF 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R +    RS+ R ++ ++SF  YL      +   ++ +   K++  LP+ LN      L
Sbjct: 61  ARQEGKSPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVEKL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +      +S  +  +  R+ A++ +LY  GLR++E +SL   ++      ++  GKGDK 
Sbjct: 121 L-----SSSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKE 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           RI+PL  +    + +Y +     L         +F    G+ L    F + ++ + +  G
Sbjct: 176 RIIPLGKTATTVLEKYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESG 235

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT+V        + ++Y 
Sbjct: 236 IEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLR----LKDVYK 291

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 292 QFHPRA 297


>gi|226945992|ref|YP_002801065.1| site-specific tyrosine recombinase XerD [Azotobacter vinelandii DJ]
 gi|226720919|gb|ACO80090.1| Site-specific tyrosine recombinase [Azotobacter vinelandii DJ]
          Length = 298

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 147/305 (48%), Gaps = 16/305 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           + + +L+ L +E+GLS  T  +Y  D   F  +L            + ++    I   ++
Sbjct: 8   QIERFLEALWLEKGLSAHTRAAYRSDLELFNGWLCERG------LALVEVGRELILDHLA 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            R       RS  R LSG++ F +YL +  +      L +   +    LP++L+E     
Sbjct: 62  WRVDAGYKARSTARFLSGLRGFFRYLLREGVIAGDPTLQVELPQLGRPLPKSLSEADVEA 121

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+         +   +  R+ A+L +LY CGLR+SE + L  + +   Q  +R+ GKG K
Sbjct: 122 LL-----AAPEDDDPLGLRDRAMLEVLYACGLRVSELVGLRLEQLNLRQGVVRVFGKGSK 176

Query: 197 IRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R+VPL       +  Y  +  P  L       LF  +RG+ +    F   I+   R  G
Sbjct: 177 ERLVPLGEEAIAWLERYLVEARPLLLGGRPSDVLFPSLRGEQMTRQTFWHRIKHHARLAG 236

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT++        + E++ 
Sbjct: 237 IGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHI----ARARLQELHA 292

Query: 316 QTHPS 320
           + HP 
Sbjct: 293 RHHPR 297


>gi|163941832|ref|YP_001646716.1| site-specific tyrosine recombinase XerD [Bacillus
           weihenstephanensis KBAB4]
 gi|229013300|ref|ZP_04170441.1| Tyrosine recombinase xerD [Bacillus mycoides DSM 2048]
 gi|229061763|ref|ZP_04199096.1| Tyrosine recombinase xerD [Bacillus cereus AH603]
 gi|163864029|gb|ABY45088.1| tyrosine recombinase XerD [Bacillus weihenstephanensis KBAB4]
 gi|228717509|gb|EEL69173.1| Tyrosine recombinase xerD [Bacillus cereus AH603]
 gi|228748067|gb|EEL97931.1| Tyrosine recombinase xerD [Bacillus mycoides DSM 2048]
          Length = 296

 Score =  279 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 159/309 (51%), Gaps = 14/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + ++++  + +E+GL+K T+ SYE D + ++ +L    + K    T  +++   I  
Sbjct: 1   MEDQLKDFIHYMIVEKGLAKNTVVSYERDLKSYVKYLQNVEQTK----TFHEVTRLHIVN 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+   +      ++L R ++ I+SF ++L + +       +++   +    LP+ L+  +
Sbjct: 57  FLQHLKENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSIDE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+      T         R+ A+L LLY  GLR+SE ++L  +++      +R  GK
Sbjct: 117 VEALL-----QTPKTASAFGIRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G+K RI+PL     +AI +Y +    +L        LF    G  L+   F + +++L +
Sbjct: 172 GNKERIIPLGSLATEAIQKYIEKGRRELMGKKAVDALFLNHHGNRLSRQGFWKILKRLAK 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + +
Sbjct: 232 EANIAKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKD 287

Query: 313 IYDQTHPSI 321
           +Y Q HP  
Sbjct: 288 VYKQFHPRA 296


>gi|261417849|ref|YP_003251531.1| site-specific tyrosine recombinase XerD [Geobacillus sp. Y412MC61]
 gi|297529517|ref|YP_003670792.1| tyrosine recombinase XerD [Geobacillus sp. C56-T3]
 gi|319767339|ref|YP_004132840.1| tyrosine recombinase XerD [Geobacillus sp. Y412MC52]
 gi|261374306|gb|ACX77049.1| tyrosine recombinase XerD [Geobacillus sp. Y412MC61]
 gi|297252769|gb|ADI26215.1| tyrosine recombinase XerD [Geobacillus sp. C56-T3]
 gi|317112205|gb|ADU94697.1| tyrosine recombinase XerD [Geobacillus sp. Y412MC52]
          Length = 298

 Score =  279 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 92/308 (29%), Positives = 155/308 (50%), Gaps = 16/308 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E +++L  L +ER L+  T+ SYE D ++++ +L    +    +Q   ++    I  F+ 
Sbjct: 4   ELKDFLHYLTVERNLAHNTIVSYERDLKKYVRYLRQVEQ----LQAWGEVERLHILHFLK 59

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               Q    R++ R L+ I+SF ++L + KI  +   +++   +   +LP+ L+ ++   
Sbjct: 60  FLSEQGQSARTIARHLASIRSFHQFLLREKIAAQDPTVHIETPQFERTLPKVLSVEEVEA 119

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+          +     R+ A+L LLY  G+R+SE + L   ++      +R  GKG K
Sbjct: 120 LL-----AAPQVSTPFGLRDKAMLELLYATGMRVSELVQLNLADVHLTMGFVRCYGKGRK 174

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            RIVP+     +A+  Y +     L          LF    G+ L    F + +++L + 
Sbjct: 175 ERIVPIGRMAIEALAHYLERGRPQLVNPRRRATEALFLNHYGQRLTRQGFWKILKRLAKE 234

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V        + ++
Sbjct: 235 AGIEKELTPHTLRHSFATHLLENGADLRAVQELLGHADISTTQMYTHVTKTR----LKDV 290

Query: 314 YDQTHPSI 321
           Y Q HP  
Sbjct: 291 YKQYHPRA 298


>gi|255264826|ref|ZP_05344168.1| site-specific tyrosine recombinase XerC [Thalassiobium sp. R2A62]
 gi|255107161|gb|EET49835.1| site-specific tyrosine recombinase XerC [Thalassiobium sp. R2A62]
          Length = 304

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 126/313 (40%), Positives = 182/313 (58%), Gaps = 9/313 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++S  L    + WL +     G S+ T ++Y+ D   FL F+  +      +  I Q+  
Sbjct: 1   MISPALRDALEGWLASTAALNGTSENTTKAYQADVAGFLAFMTVHHGGAQGLGPISQICV 60

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           +++RA+++  R + +  RSL RSLS +K+F  +  +R+    + +L+ R  K    LPR 
Sbjct: 61  SDMRAWMASERGRGVAARSLARSLSAVKTFYCWFAEREGFEPTAVLSTRAPKFQKKLPRP 120

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L E  A  ++D V L  +    W+ AR+ A++ LLYGCGLRISEAL L  +++     TL
Sbjct: 121 LAEDAARAMIDTVELQAAEP--WVAARDMAVMTLLYGCGLRISEALGLCGRDVPL-PQTL 177

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKG K R+VP++P    A+  Y   CP+ +  +   PLFRG+RG  LNP   Q+   
Sbjct: 178 RILGKGGKERVVPVIPQACDAVAAYLRQCPYPVEPDA--PLFRGVRGGALNPRAIQKVTE 235

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
             R  LGLP + T H +RHSFATHLLS GGDLR+IQ +LGH  LSTTQ YT V++     
Sbjct: 236 AARLQLGLPATATPHAMRHSFATHLLSAGGDLRAIQELLGHASLSTTQTYTAVDTAR--- 292

Query: 309 WMMEIYDQTHPSI 321
            +ME+YD+THP  
Sbjct: 293 -LMEVYDRTHPKA 304


>gi|126737207|ref|ZP_01752942.1| tyrosine recombinase [Roseobacter sp. SK209-2-6]
 gi|126721792|gb|EBA18495.1| tyrosine recombinase [Roseobacter sp. SK209-2-6]
          Length = 328

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 128/318 (40%), Positives = 184/318 (57%), Gaps = 9/318 (2%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           NN   ++S       +NWL  L    G S+ T+ +Y+ D   FL F+  +      ++ +
Sbjct: 20  NNAGLLISPACRDALENWLLGLTALSGASENTITAYQGDLTSFLGFMTLHRGSPQGLKAL 79

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
             +   ++RA++++ R    G RSL R LS +KSF ++L +R+    + +L  R  K   
Sbjct: 80  ADIKTADMRAWMAQERGSGTGPRSLARRLSAVKSFYRWLAEREGFEPTAVLAARAPKFQK 139

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            LPR L E+ A  +++ V   +  ET WI AR+ A++ LLYGCGLRISEAL L   +   
Sbjct: 140 KLPRPLAEEAAKAVLERVEQQS--ETDWIGARDLAVVTLLYGCGLRISEALGLKGGDAPL 197

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
             ++LRI GKG K R+VP+L + R A+  Y  LCP   +   + PLFRG+RG  LNP   
Sbjct: 198 -PASLRILGKGGKERLVPVLDAARDAVDHYLALCPH--SAEKETPLFRGVRGGALNPRQI 254

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           Q  + ++R  LGLP S T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ Y  V++
Sbjct: 255 QSTMAKVRAQLGLPASATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYAAVDT 314

Query: 304 KNGGDWMMEIYDQTHPSI 321
            +    +M +Y++ HP  
Sbjct: 315 AH----LMAVYNRAHPKA 328


>gi|294501141|ref|YP_003564841.1| tyrosine recombinase XerD [Bacillus megaterium QM B1551]
 gi|294351078|gb|ADE71407.1| tyrosine recombinase XerD [Bacillus megaterium QM B1551]
          Length = 297

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 91/308 (29%), Positives = 157/308 (50%), Gaps = 15/308 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            + Q+++  L +ERGL+K T+ SYE D +++  +L    +    +++  +++   I  F+
Sbjct: 3   DQIQDFIHYLVVERGLAKNTIDSYERDLKKYAQYLEHVEQ----LKSFNEVTRLHIVNFL 58

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                Q+   +++ R ++  +SF ++L + K       +++   +    LP+ LN ++  
Sbjct: 59  KYLSDQQKSSKTIARHVASTRSFHQFLLREKAADTDPSVHIDTPQLERKLPKVLNAEEVE 118

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L++         +     R+ A+L LLY  G+R+SE ++L   +       +R  GKG+
Sbjct: 119 ALLNVF-----DTSTPFGIRDKAMLELLYATGIRVSELVNLNIDDAHLTMGFIRCIGKGN 173

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K RIVP+     +AI EY       L    +    LF    G+ L    F + +++L   
Sbjct: 174 KERIVPIGRLATEAIEEYLQHSRSVLTKQKEQDKALFVNHHGRRLTRQGFWKILKKLASE 233

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        + ++
Sbjct: 234 AKIEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKAR----LKDV 289

Query: 314 YDQTHPSI 321
           Y+Q HP  
Sbjct: 290 YNQFHPRA 297


>gi|296117987|ref|ZP_06836570.1| tyrosine recombinase XerD [Corynebacterium ammoniagenes DSM 20306]
 gi|295969218|gb|EFG82460.1| tyrosine recombinase XerD [Corynebacterium ammoniagenes DSM 20306]
          Length = 322

 Score =  279 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 96/317 (30%), Positives = 153/317 (48%), Gaps = 16/317 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            + EL+   Q WL +L +E+G SK T+ +Y  D ++++ +L         I T+ ++S  
Sbjct: 17  PAPELVSVAQGWLDHLAVEKGASKNTVSNYRRDLKRYVSWLTT-----ANISTLSEVSSH 71

Query: 70  EIRAFISKRRT-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            + ++++  R      + +   S  R+L   +   K+     +        +        
Sbjct: 72  HVESYVADLRRGWDGQKPLSSASTSRALIVARGLHKFALSEGLIDVDVAAEVAPPSPGKH 131

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP +L+  +   L+D+  +        +D R+ A+L +LYG G R+SE L L   ++ D 
Sbjct: 132 LPDSLSIDEVTRLIDS--VPAGEVATAVDIRDKALLEMLYGTGARVSELLDLAVDDVADS 189

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
              L + GKG K R+VPL    R AI EY       L+      LF    GKPL+     
Sbjct: 190 PEILTVTGKGSKQRLVPLGSHARTAIEEYLVRARPQLSRGKSHALFLNTLGKPLSRQSAW 249

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             I+Q  +  GL    + HTLRHSFATHLL  G D+R++Q +LGH  ++TTQIYT+V   
Sbjct: 250 AVIQQAVQRAGLDKKVSPHTLRHSFATHLLQGGADVRTVQELLGHSSVTTTQIYTHVT-- 307

Query: 305 NGGDWMMEIYDQTHPSI 321
              D + E++   HP  
Sbjct: 308 --ADSLREVWRVAHPRA 322


>gi|77918237|ref|YP_356052.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380]
 gi|77544320|gb|ABA87882.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380]
          Length = 332

 Score =  278 bits (712), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 100/317 (31%), Positives = 160/317 (50%), Gaps = 16/317 (5%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI---TIQTIRQLSY 68
           F++ +    + ++LE+ER LS  TL++Y  D  +F  FL     E+    T   I Q+  
Sbjct: 29  FDMDRLIARFCRHLEVERNLSPHTLRAYRQDLTEFSRFLKQEAGEEGSSNTASAIEQVDA 88

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R ++++   +     ++ R LS ++SF +YL ++     S    +   K+   LP+ 
Sbjct: 89  LVLRRYLARLHKRNRK-TTIGRKLSAVRSFFRYLVRQGELAVSPAETVATPKREQYLPKV 147

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L   +   L+       +   + +  R+ AIL L Y  GLR+ E   L   ++      +
Sbjct: 148 LTVDEVFALI-----KAADGDEPLTVRDRAILELFYSSGLRVGELEGLDVGHVDLRDGLV 202

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R++GKGDK RIVP+    R+A+  Y          + + PLF   RG  L+    +R ++
Sbjct: 203 RVRGKGDKERIVPMGRPARQALGRYLAERGV---PDREQPLFLNYRGGRLSSRSIERNLK 259

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     G+    + H LRH+FATHLL  G DLR+IQ +LGH  LSTTQ YT V+     D
Sbjct: 260 KWLLCAGILKDASPHALRHTFATHLLDGGADLRAIQELLGHASLSTTQKYTQVS----LD 315

Query: 309 WMMEIYDQTHPSITQKD 325
            +ME+YD+THP   +K 
Sbjct: 316 RLMEVYDRTHPRGRKKK 332


>gi|327183467|gb|AEA31914.1| tyrosine recombinase xerD [Lactobacillus amylovorus GRL 1118]
          Length = 301

 Score =  278 bits (712), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 98/316 (31%), Positives = 170/316 (53%), Gaps = 18/316 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + + EL  +  ++L+  ++ERGLS  T+ +Y  D  ++L F+     +K  + +      
Sbjct: 1   MTNNELQDQIDDYLRFSQVERGLSTNTISAYRQDLEEYLSFI-----KKEGVSSW-PTEA 54

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           +++ AF++++R       S+ R +S ++ F ++L ++ I   + +L +   KK   LP A
Sbjct: 55  SDVDAFLARQRDLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTA 114

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+ ++   L++          + +  R+ AIL  LY  G+R+SE ++L  Q+I +D   +
Sbjct: 115 LSREEVNRLLEQ-----PDVEQKLGLRDRAILETLYATGMRVSELINLELQDIHEDLGLI 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQR 245
           R+ GKG K R++P+ P     I +Y       L   +      LF   RG  L      +
Sbjct: 170 RVLGKGSKERLIPISPVALHWIDKYQKQVRDPLILKSGKNDEHLFLNNRGGKLTRQAIWQ 229

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            I++  +  G+    T HTLRH+FATHLL NG DLR +Q ILGH  +STTQIYTN++ K+
Sbjct: 230 MIKKYCQMAGITKDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKH 289

Query: 306 GGDWMMEIYDQTHPSI 321
               ++++Y +THP +
Sbjct: 290 ----ILQVYQKTHPRL 301


>gi|149177593|ref|ZP_01856195.1| integrase/recombinase [Planctomyces maris DSM 8797]
 gi|148843573|gb|EDL57934.1| integrase/recombinase [Planctomyces maris DSM 8797]
          Length = 313

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 95/320 (29%), Positives = 155/320 (48%), Gaps = 13/320 (4%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
            + S +L     ++L+ L+IER  S LTL+SY  D    + +L  Y      +    Q+ 
Sbjct: 6   AVRSIDLHDAIDHFLRYLQIERNSSDLTLKSYAEDLESLVEYLTEYEG---ALLPPDQIG 62

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
            +E+R +++     +    ++ R L+ ++SF +Y  +   +  +    +R  +    LP 
Sbjct: 63  ISELRRYVAYLHECQYEKTTIARRLACLRSFFRYCCREGYSKTNPAKPLRTPRTGRKLPH 122

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L   Q  TL++          + +  R+ AIL  LY  GLR+SE ++L   +   D + 
Sbjct: 123 FLTTDQIGTLLE-----APPANQKMGLRDRAILETLYSAGLRVSELVALNVSDWDQDANI 177

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRY 246
           +R+ GKG K RI P+     KA+  + +        +     LF       L      R 
Sbjct: 178 IRVLGKGRKERIAPIGSFAAKALTHWLEEREAKPGAHPDSDALFLNRLKTRLTSRSVGRM 237

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           + +     GL   T+ HTLRH+FATHLL  G DLRS+Q +LGH  L+TTQIYT+V++K  
Sbjct: 238 LEKYLLQTGLDKKTSPHTLRHTFATHLLDGGADLRSVQELLGHKSLTTTQIYTHVSTKR- 296

Query: 307 GDWMMEIYDQTHPSITQKDK 326
              ++E Y++ HP   +  K
Sbjct: 297 ---LLETYEKAHPHAQRSKK 313


>gi|83943902|ref|ZP_00956359.1| tyrosine recombinase [Sulfitobacter sp. EE-36]
 gi|83845149|gb|EAP83029.1| tyrosine recombinase [Sulfitobacter sp. EE-36]
          Length = 315

 Score =  278 bits (711), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 123/321 (38%), Positives = 188/321 (58%), Gaps = 10/321 (3%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M G N   ++S       Q+WL +    +G ++ T+ +Y+ D   FL F+  +  +   +
Sbjct: 1   MSGANAL-LISPAARDALQSWLDHQRALKGAAENTITAYQGDLVDFLAFMTLHKGDSQGL 59

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             + Q++ +++RA++++ R+  +G RS+ R LS +K+F ++L +R+    + +L+ R+ K
Sbjct: 60  GALSQITISDMRAWMAQTRSGDVGPRSMARKLSAVKAFYRWLAEREGFEPTAVLSTRSPK 119

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LPR L    A  ++D+V + + H   W+ AR+ A+L LL+GCGLRISEAL L   +
Sbjct: 120 FPKKLPRPLAIDAAQAMIDSVEMQSRH--AWVAARDVAVLTLLWGCGLRISEALGLKGAD 177

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
               +  LRI GKG K R+VP+LP+ R A+  Y  +CPF        PLFR +RG PL  
Sbjct: 178 APLPE-VLRIIGKGGKERVVPVLPAARDAVDAYLRVCPF--GKERDAPLFRAMRGGPLAA 234

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               + +   R  LGLP S T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ YT 
Sbjct: 235 RAISQVMADARMQLGLPASATPHALRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYTA 294

Query: 301 VNSKNGGDWMMEIYDQTHPSI 321
           V++      +M++Y++ HP  
Sbjct: 295 VDTAR----LMDVYNRAHPKA 311


>gi|311068948|ref|YP_003973871.1| site-specific tyrosine recombinase XerD [Bacillus atrophaeus 1942]
 gi|310869465|gb|ADP32940.1| site-specific tyrosine recombinase XerD [Bacillus atrophaeus 1942]
          Length = 296

 Score =  278 bits (711), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 97/309 (31%), Positives = 163/309 (52%), Gaps = 14/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + ++++  + +ERGLS+ T+ SYE D + + +FL     E + + +  +++   I  
Sbjct: 1   MKDQLKDFIHYVMVERGLSQNTMMSYERDLKSYSLFLT----ETLQVTSWNEVTRIHIIQ 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++   +      ++  R L+ I+SF ++L + K+T +   +++   K   +LP+ L+ K+
Sbjct: 57  YLKHLKDSGKSGKTSARHLASIRSFHQFLLREKVTDKDPSVHIETQKTERTLPKVLSLKE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D     T   T     R+ A+L LLY  G+R+SE + L   ++      +R  GK
Sbjct: 117 VELLLD-----TPKLTSPFGYRDKAMLELLYATGIRVSEMIDLKTSDVHLSMGFVRCFGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K RIVP+  +   AI EY        L  N+   LF    GK ++   F + ++++  
Sbjct: 172 GRKERIVPIGETAAHAIEEYLAKARGKLLKKNVSDALFLNHHGKQISRQGFWKNLKKIAL 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        + +
Sbjct: 232 EAGIKKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----LKD 287

Query: 313 IYDQTHPSI 321
           +Y Q HP  
Sbjct: 288 VYKQYHPRA 296


>gi|329894263|ref|ZP_08270149.1| Site-specific recombinase XerD [gamma proteobacterium IMCC3088]
 gi|328923194|gb|EGG30516.1| Site-specific recombinase XerD [gamma proteobacterium IMCC3088]
          Length = 298

 Score =  278 bits (711), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 158/305 (51%), Gaps = 14/305 (4%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           + + ++  L +ERGLS  +L +Y  D   +  +L    ++ +  + +RQ    +++ ++ 
Sbjct: 6   DIEQFIDALWMERGLSDNSLSAYRTDLAHYQAWL----DKAVAGRQLRQADGADLQRYLG 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            R  Q    RS  R LS ++SF +Y  ++         ++ + K   +LP++L+E+    
Sbjct: 62  LRLKQGRSPRSTARLLSCLRSFYRYALRQNWCVTDPTADVESPKMGRALPKSLSEQDVDA 121

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L     L   +    I+ R+ A+L LLY CGLR+SE + LT  NI  +Q  +R+ GKG K
Sbjct: 122 L-----LSAPNVESPIELRDKAMLELLYACGLRVSELVGLTQLNISVNQGVVRVLGKGSK 176

Query: 197 IRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R+VP+       +  Y     P  +       LF  IRG+ +    F   I+   +  G
Sbjct: 177 ERLVPMGEEALDWLTRYLREGRPLIVEKKANDWLFPSIRGQGMTRQTFWHRIKLYAKRAG 236

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + HTLRH+FATHLL++G DLR +Q +LGH  L+TTQIYT+V  +     + +++ 
Sbjct: 237 IKAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLTTTQIYTHVAQQR----LQDLHA 292

Query: 316 QTHPS 320
           + HP 
Sbjct: 293 KHHPR 297


>gi|117620205|ref|YP_857765.1| tyrosine recombinase XerD [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117561612|gb|ABK38560.1| tyrosine recombinase XerD [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 299

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 92/314 (29%), Positives = 156/314 (49%), Gaps = 16/314 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +   E     + +L  L +ERGLS  T+ SY  D  +F ++L           ++     
Sbjct: 1   MSKSESHPLIEPFLDALWLERGLSDNTVSSYRTDLEKFALWLDEQGG------SLLLAGL 54

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            +I+ +++ R  Q+    S  R LS ++ F +YL + K+ ++   + +   K    LP  
Sbjct: 55  DDIQHYLAWRVDQQFAASSTARFLSALRRFYQYLNREKLRSDDPTVLLEGPKLPKKLPSD 114

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+E +   L+   L+      + ++ R+ A+L LLY  GLR+SE + LT +++   Q  +
Sbjct: 115 LSEAEVEALLQAPLV-----DEPLELRDKAMLELLYATGLRVSELVGLTAEHVSLRQGLV 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           R+ GKG+K R+VP+       +  YY       L       +F   + + +    F   I
Sbjct: 170 RVVGKGNKERLVPMGEEAVHWLERYYREARTLLLGGTSSDVVFPSKQARMMTRQTFWHRI 229

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +   +  G+    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++   
Sbjct: 230 KLYAQRAGIQGELSPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVANER-- 287

Query: 308 DWMMEIYDQTHPSI 321
             +  ++ Q HP  
Sbjct: 288 --LKALHGQHHPRA 299


>gi|319409399|emb|CBI83043.1| integrase/recombinase XerC [Bartonella schoenbuchensis R1]
          Length = 332

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 141/324 (43%), Positives = 203/324 (62%), Gaps = 10/324 (3%)

Query: 2   EGNNLPEIVSFE-LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           +G N P I + + LL  R+ WL+ L   R ++  T Q+YE DTRQFLIFL  +   ++T 
Sbjct: 9   KGQNAPLIPAEQGLLVARKKWLEGLVKTRRMATHTAQAYERDTRQFLIFLCHHLGHEVTC 68

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           + +  L   ++RA+++ RRT KI  RSL R+++ ++SF  YL +  I        +R  K
Sbjct: 69  KDLADLRVVDLRAYLAHRRTLKISARSLSRNVASLRSFFNYLSREGIVDTLAAKLIRTPK 128

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LP+ LN + AL ++     +   +  WI ARN A+L LLYGCG+RISEAL+LTP+ 
Sbjct: 129 HPKLLPKPLNVQAALHIIKPE--NQQEDEPWIIARNVAVLALLYGCGMRISEALALTPEQ 186

Query: 181 IMDDQST-LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
             D + T L + GKG K R+VPL+ +V + +  Y   CP+ L      P+FRG+RG PL 
Sbjct: 187 FSDPEITSLSVIGKGGKTRLVPLIKTVYEMVETYLKCCPYPLV--STQPMFRGVRGGPLQ 244

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           P + QR ++ LR  LGLP +TT H LRHSFATHLLS GGDLR+IQ +LGH  LSTTQ+YT
Sbjct: 245 PAIIQRLVQNLRARLGLPETTTPHALRHSFATHLLSRGGDLRTIQELLGHACLSTTQVYT 304

Query: 300 NVNSKNGGDWMMEIYDQTHPSITQ 323
           ++++    D ++E+Y + HP  ++
Sbjct: 305 HIDT----DRLLEVYQKAHPRASK 324


>gi|52080868|ref|YP_079659.1| site-specific tyrosine recombinase XerD [Bacillus licheniformis
           ATCC 14580]
 gi|52786240|ref|YP_092069.1| site-specific tyrosine recombinase XerD [Bacillus licheniformis
           ATCC 14580]
 gi|319645175|ref|ZP_07999408.1| RipX protein [Bacillus sp. BT1B_CT2]
 gi|52004079|gb|AAU24021.1| site-specific integrase/recombinase [Bacillus licheniformis ATCC
           14580]
 gi|52348742|gb|AAU41376.1| RipX [Bacillus licheniformis ATCC 14580]
 gi|317392984|gb|EFV73778.1| RipX protein [Bacillus sp. BT1B_CT2]
          Length = 296

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 98/306 (32%), Positives = 162/306 (52%), Gaps = 14/306 (4%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             ++++    +ERGLS  T+ SYE D   +  +L    EE+  + +  Q++   I  F+ 
Sbjct: 4   HIKDFIHYAVVERGLSHNTVVSYERDLNSYAAYL----EEQEQLSSFDQVTRLHIIQFLK 59

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             +      +++ R L+ I+SF ++L + K+T +   +++ + K   +LP+ L+ ++  T
Sbjct: 60  HLKDAGKSGKTVARHLASIRSFHQFLLREKVTAQDPSVHIESQKTERTLPKVLSLQEVET 119

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+D     T   T     R+ A+L LLY  G+R+SE ++L   ++      +R  GKG K
Sbjct: 120 LLD-----TPKLTGPFGYRDKAMLELLYATGIRVSEMIALKLSDVHLSMGFIRCFGKGRK 174

Query: 197 IRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            RIVPL  +   A+ EY        L  N +  LF    G+ ++   F + ++++    G
Sbjct: 175 ERIVPLGEAASHAVGEYLSKARGKLLKKNTEDALFLNHHGRQMSRQGFWKNLKKIALEAG 234

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        + ++Y 
Sbjct: 235 INKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----LKDVYR 290

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 291 QYHPRA 296


>gi|49474762|ref|YP_032804.1| site-specific tyrosine recombinase XerC [Bartonella quintana str.
           Toulouse]
 gi|49240266|emb|CAF26736.1| Integrase /recombinase xerC [Bartonella quintana str. Toulouse]
          Length = 322

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 146/320 (45%), Positives = 196/320 (61%), Gaps = 9/320 (2%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
            N         +L  R+NWL NL   R ++  T Q+YE DTRQFL FL  +   K T   
Sbjct: 11  KNVFLIPADPPVLAARKNWLDNLLQTRRMATHTAQAYERDTRQFLSFLCQHLGHKPTFHD 70

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +  L  T++RA+++ RRT  I  RSL R ++G++SF  YL +  I +      +R  K S
Sbjct: 71  LANLRVTDLRAYLAYRRTLNISARSLSRGMAGLRSFFNYLSREGIVSIPASKLVRTPKYS 130

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI- 181
            SLP+ L  K AL +V     +      WI ARN+A+L LLYGCG+RISEAL+LTP+   
Sbjct: 131 KSLPKPLAIKSALHVVKQE--NQQENESWIIARNAAVLILLYGCGMRISEALALTPEQFS 188

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
             ++++L + GKG K R+VPL+  V + I  Y   CP+ L  N   P+FRG RG PL+P 
Sbjct: 189 DPEKTSLFVTGKGGKTRLVPLIKVVYETIQNYLKCCPYPLVENQ--PMFRGARGGPLHPA 246

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + QR +R LR  LGLP + T H+LRHSFATHLLS GGDLR+IQ +LGH  LSTTQIYT+V
Sbjct: 247 IIQRTVRNLRSSLGLPETATPHSLRHSFATHLLSRGGDLRTIQELLGHASLSTTQIYTHV 306

Query: 302 NSKNGGDWMMEIYDQTHPSI 321
           ++    D ++EIY + HP  
Sbjct: 307 DT----DRLLEIYQKAHPRA 322


>gi|82701881|ref|YP_411447.1| tyrosine recombinase XerD [Nitrosospira multiformis ATCC 25196]
 gi|82409946|gb|ABB74055.1| Tyrosine recombinase XerD [Nitrosospira multiformis ATCC 25196]
          Length = 303

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 96/311 (30%), Positives = 156/311 (50%), Gaps = 16/311 (5%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           + ELL E   +   L +E GLS+ T++SY  D  QF  + A    +  +  T   +++++
Sbjct: 7   NPELLDE---FCDALWLEDGLSRNTMESYRSDLEQFGDWFARQKPDDSSFLT---VTHSD 60

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +  F++ R +  +   +  R LS +K F ++L ++        LN+   +   +LP +L 
Sbjct: 61  LLGFMTGRFSAGMKASTTSRELSSLKRFYRFLLRQGKINADPTLNIDTPRLPRNLPVSLT 120

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           E     L+          T  +  R+ A+L +LY  GLR+SE +SL    I  D   +RI
Sbjct: 121 EADVEALL-----GAPDVTFPLGLRDRAMLEVLYASGLRVSELVSLESGQISLDMGVVRI 175

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
            GKG K R+ PL     + ++ Y   + P  L+      LF   RG  +    F   I++
Sbjct: 176 MGKGGKERLTPLGEEALEWMVRYIKEIRPGLLDGKSSNALFVTYRGAGMTRQAFWYLIKR 235

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             R  G+    + H LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     
Sbjct: 236 YARQAGITKPLSPHGLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER---- 291

Query: 310 MMEIYDQTHPS 320
           + +I++  HP 
Sbjct: 292 LKKIHEMHHPR 302


>gi|299821615|ref|ZP_07053503.1| tyrosine recombinase XerD [Listeria grayi DSM 20601]
 gi|299817280|gb|EFI84516.1| tyrosine recombinase XerD [Listeria grayi DSM 20601]
          Length = 296

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 92/306 (30%), Positives = 152/306 (49%), Gaps = 16/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L  L +E+GL+  T+Q+Y+ D R F  FL         I     ++   + AFI+ 
Sbjct: 5   VEDFLHYLVVEKGLAANTIQAYKRDLRYFDSFLEIE-----GITDPNSITRGTVVAFIAF 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R      R++ R L+ ++SF  +L   +      ++ +   K++ +LP+ L+ ++   L
Sbjct: 60  ARDADKSPRTIARYLASLRSFFHFLLHDQKMDHDPMIQIETPKQTKALPKVLHLEEVEKL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +             +  R+ A+L +LY  GLR+SE + L   ++      ++  GKGDK 
Sbjct: 120 L-----AAPDPNSILGLRDQAMLEILYATGLRVSELIHLKLDDLHLHMGFIQTIGKGDKE 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           RI+PL  +    + +Y +     L         +F    G  L    F + ++QL +  G
Sbjct: 175 RIIPLGHTATAVLTKYLEEARPKLRKPKYRNDYVFLNHHGGGLTRQGFWKLLKQLAQKAG 234

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT+V        + ++Y 
Sbjct: 235 IDKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLR----LQDVYK 290

Query: 316 QTHPSI 321
           + HP  
Sbjct: 291 KYHPRA 296


>gi|110833664|ref|YP_692523.1| integrase/recombinase XerD [Alcanivorax borkumensis SK2]
 gi|110646775|emb|CAL16251.1| integrase/recombinase XerD [Alcanivorax borkumensis SK2]
          Length = 312

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 97/316 (30%), Positives = 154/316 (48%), Gaps = 20/316 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++ +  +   +WL    +E+GLS+ +L +Y  D  Q   +L       +  +        
Sbjct: 9   LTEDHRRLIDSWLDQQWLEKGLSEHSLSNYRRDLSQLACWLQGQRVALLGCE------RY 62

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++  F++ R  Q +  RS+ R LS +KSF ++LK+    +E   L +   K    LP+ L
Sbjct: 63  QLLEFLAYRHQQGLSARSVARQLSAVKSFYRWLKREGRISEDPALLIERPKLGRPLPKTL 122

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +E     L+          +  +  R+ A+L +LY  GLR++E ++LT   +   Q  +R
Sbjct: 123 SEADVEALL-----AAPDLSTPLGLRDRAMLEVLYATGLRVTELVTLTQSQVNPRQGVIR 177

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQ 244
           + GKGDK R+VPL       +  Y       L      P     LF   RG  +    F 
Sbjct: 178 VIGKGDKERLVPLGEEALHWLERYLREGRALLMGGAATPGNQELLFPSRRGTCMTRQTFW 237

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             I+QL    G+    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V  +
Sbjct: 238 HRIKQLAVVAGVQKKLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQQ 297

Query: 305 NGGDWMMEIYDQTHPS 320
                + ++Y + HP 
Sbjct: 298 R----LQDVYQKHHPR 309


>gi|258515282|ref|YP_003191504.1| tyrosine recombinase XerD [Desulfotomaculum acetoxidans DSM 771]
 gi|257778987|gb|ACV62881.1| tyrosine recombinase XerD [Desulfotomaculum acetoxidans DSM 771]
          Length = 296

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 95/306 (31%), Positives = 146/306 (47%), Gaps = 16/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             N++  L +ERGL++ TL +Y  D + FL F          I++        I  ++  
Sbjct: 5   LDNFIYYLAVERGLAENTLSAYRMDLQNFLSFCQDKQ-----IKSWSDAGKNTILMYMMF 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            + Q +   ++ R L+ +KSF ++L   ++   S   +M + K S  LP  L+  +   L
Sbjct: 60  LKQQAMSPATISRRLAALKSFFRFLTSEQVVEFSPTESMESPKLSQKLPNVLSTSEVELL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +    +           R+ A+L LLY  G+R+SE + L  +++   +  +R  GKG K 
Sbjct: 120 LMQPKISQPA-----GIRDKAMLELLYATGIRVSELVDLNLEDVSIAEQFIRCYGKGSKE 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           RIVPL       + EY       L         LF    G+ L    F + I++  R   
Sbjct: 175 RIVPLGSLSASFVEEYLQKGRVKLIKKAQTTNALFLNHHGQRLTRQGFWKIIKKYGRQGK 234

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT++        + E+Y 
Sbjct: 235 IDKPITPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHLTKTR----LKEVYK 290

Query: 316 QTHPSI 321
            +HP  
Sbjct: 291 NSHPRA 296


>gi|295706488|ref|YP_003599563.1| tyrosine recombinase XerD [Bacillus megaterium DSM 319]
 gi|294804147|gb|ADF41213.1| tyrosine recombinase XerD [Bacillus megaterium DSM 319]
          Length = 297

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 156/308 (50%), Gaps = 15/308 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            + Q+++  L +ERGL+K T+ SYE D + +  +L    +    +++  +++   I  F+
Sbjct: 3   DQIQDFIHYLVVERGLAKNTIDSYERDLKNYAQYLEHVEQ----LKSFNEVTRLHIVNFL 58

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                Q+   +++ R ++  +SF ++L + K       +++   +    LP+ LN ++  
Sbjct: 59  KYLSDQQKSSKTIARHVASTRSFHQFLLREKAADTDPSVHIDTPQLERKLPKVLNAEEVE 118

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L++         +     R+ A+L LLY  G+R+SE ++L   +       +R  GKG+
Sbjct: 119 ALLNVF-----DTSTPFGIRDKAMLELLYATGIRVSELVNLNIDDAHLTMGFIRCIGKGN 173

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K RIVP+     +AI +Y       L    +    LF    G+ L    F + +++L   
Sbjct: 174 KERIVPIGRLATEAIEDYLQHSRSVLTKQKEQDKALFVNHHGRRLTRQGFWKILKKLASE 233

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        + ++
Sbjct: 234 AKIEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKAR----LKDV 289

Query: 314 YDQTHPSI 321
           Y+Q HP  
Sbjct: 290 YNQFHPRA 297


>gi|109900015|ref|YP_663270.1| tyrosine recombinase XerD [Pseudoalteromonas atlantica T6c]
 gi|109702296|gb|ABG42216.1| tyrosine recombinase XerD [Pseudoalteromonas atlantica T6c]
          Length = 301

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 93/303 (30%), Positives = 150/303 (49%), Gaps = 13/303 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + +E+GLS+ TL +Y  D  +F  FL   +    ++  +  +   +I  ++++
Sbjct: 11  IEQFLDTIWLEKGLSENTLDAYRSDLTKFSDFLRAQS----SVVNLLDIQTEDINQYMAE 66

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R    + +RS  R LS ++ F  Y+    +  +  +  M+N K S  LP+ L+E+Q   L
Sbjct: 67  RFDNGLSERSSARCLSSLRRFSGYMLAHGLREDDPVSRMQNPKLSKPLPKTLSEQQVDDL 126

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L+       I  R+ A+L +LY  GLR++E ++L    +   Q  +R+ GKG+K 
Sbjct: 127 -----LNAPQTDDPIQLRDKAMLEVLYATGLRVTELVTLRVGQLSISQGVVRVTGKGNKE 181

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VPL       +  Y       L  N    LF   RG  +    F   I+       + 
Sbjct: 182 RLVPLGEEALDWLTTYMKEARGALLRNESDVLFPSNRGTIMTRQTFWHRIKFHATQANIT 241

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V +      + E+    
Sbjct: 242 SDLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATAR----LQELVAAH 297

Query: 318 HPS 320
           HP 
Sbjct: 298 HPR 300


>gi|296112007|ref|YP_003622389.1| integrase/recombinase [Leuconostoc kimchii IMSNU 11154]
 gi|295833539|gb|ADG41420.1| integrase/recombinase [Leuconostoc kimchii IMSNU 11154]
          Length = 298

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 88/313 (28%), Positives = 158/313 (50%), Gaps = 16/313 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++ E+     ++L  + IERGLS  T++SY+ D +QF +++            +  + + 
Sbjct: 1   MTQEIDNAIADYLHYIRIERGLSDNTIKSYQQDLKQFSVYMTAEN------LNLNAVDHV 54

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            I  ++++ R     + S+ R ++ ++ F  YL +  +   + + +++  KK+  LP  L
Sbjct: 55  VILTWLNQLRELNKSNNSVIRMVTSLRKFFGYLLQENVIRHNPMSDVKPPKKAEHLPAVL 114

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  +   L+         E   +  RN A++ ++Y  GLR+SE ++L   ++      ++
Sbjct: 115 SVAEIDALL-----QVPTEKTALGLRNRALIEVMYATGLRVSELVNLKMSDLHLQLGLIQ 169

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
             GKGDK RI+P+     + +  Y+       L   +   +F   RG  L+     + I+
Sbjct: 170 TIGKGDKERIIPIGEIATEWLERYFSHSRLTLLKDKVSPFVFLNDRGTQLSRQGVWKIIK 229

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            L    G+    + HTLRHSFATH+L NG DLR +Q +LGH  +STTQIYT+++ K    
Sbjct: 230 NLVSAAGIDKDVSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKR--- 286

Query: 309 WMMEIYDQTHPSI 321
            + E+YD  HP  
Sbjct: 287 -LSEVYDAFHPRA 298


>gi|83954474|ref|ZP_00963185.1| tyrosine recombinase [Sulfitobacter sp. NAS-14.1]
 gi|83840758|gb|EAP79929.1| tyrosine recombinase [Sulfitobacter sp. NAS-14.1]
          Length = 315

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 122/321 (38%), Positives = 188/321 (58%), Gaps = 10/321 (3%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M G N   ++S       Q+WL +    +G ++ T+ +Y+ D   FL F+  +  +   +
Sbjct: 1   MSGANAL-LISPAARDALQSWLDHQRALKGAAENTITAYQGDLVDFLAFMTLHKGDSQGL 59

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             + +++ +++RA++++ R+  +G RS+ R LS +K+F ++L +R+    + +L+ R+ K
Sbjct: 60  GALSKITISDMRAWMAQTRSGDVGPRSMARKLSAVKAFYRWLAEREGFEPTAVLSTRSPK 119

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LPR L    A  ++D+V + + H   W+ AR+ A+L LL+GCGLRISEAL L   +
Sbjct: 120 FPKKLPRPLAIDAAQAMIDSVEMQSRH--AWVAARDVAVLTLLWGCGLRISEALGLKGAD 177

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
               +  LRI GKG K R+VP+LP+ R A+  Y  +CPF        PLFR +RG PL  
Sbjct: 178 APLPE-VLRIIGKGGKERVVPVLPAARDAVEAYLRVCPF--GKERDAPLFRAVRGGPLAA 234

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               + +   R  LGLP S T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ YT 
Sbjct: 235 RAISQVMADARMQLGLPASATPHALRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYTA 294

Query: 301 VNSKNGGDWMMEIYDQTHPSI 321
           V++      +M++Y++ HP  
Sbjct: 295 VDTAR----LMDVYNRAHPKA 311


>gi|110679359|ref|YP_682366.1| site-specific tyrosine recombinase XerC [Roseobacter denitrificans
           OCh 114]
 gi|109455475|gb|ABG31680.1| tyrosine recombinase XerC [Roseobacter denitrificans OCh 114]
          Length = 306

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 129/312 (41%), Positives = 185/312 (59%), Gaps = 9/312 (2%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S       Q+WL +    +G ++ TL +Y+ D   FL F+  +      +  +  +S T
Sbjct: 4   ISPAAADALQSWLAHQRAIKGAAENTLIAYQGDVIDFLSFITAHKGAPQGLGALADVSVT 63

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++RA++++ R   +  RSL R LS +K+F K+L  R+    + +L+ R  K    LPR L
Sbjct: 64  DMRAWMAQTRETGVAARSLARKLSAVKAFYKWLALREGFEPTAVLSTRAPKFQKKLPRPL 123

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
               A  L+D + + + H   W+ AR+ A++ LL+GCGLRISEALSLT  +     +TLR
Sbjct: 124 APDAARNLIDAIEIQSQHP--WVCARDVAVVTLLWGCGLRISEALSLTAADAPL-PATLR 180

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           I GKG K RIVP+LP+ R A+  Y  +CP     +   PLFR +RG PL PG  Q+ +  
Sbjct: 181 ISGKGGKERIVPVLPAARDAVDAYVRMCPHPQTADA--PLFRAVRGGPLRPGAIQKVMAA 238

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            R  LGLP + T H +RHSFATHLL+ GGDLR+IQ +LGH  LSTTQ YT V++      
Sbjct: 239 ARMQLGLPATATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTAVDTVR---- 294

Query: 310 MMEIYDQTHPSI 321
           +ME+YD+THP  
Sbjct: 295 LMEVYDRTHPKA 306


>gi|118590571|ref|ZP_01547973.1| site-specific tyrosine recombinase XerC [Stappia aggregata IAM
           12614]
 gi|118437034|gb|EAV43673.1| site-specific tyrosine recombinase XerC [Stappia aggregata IAM
           12614]
          Length = 319

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 138/319 (43%), Positives = 192/319 (60%), Gaps = 9/319 (2%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
            ++L      EL +    WL +L  ER LS  TL +YE D RQFL FL  +      ++ 
Sbjct: 8   SDSLLVCARPELNRRVDQWLDHLSDERRLSDKTLLAYERDLRQFLRFLTNHLGGAPDLKE 67

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           I  L   + R F++ RR   +  RSL R L+GI+SFL++L++R     +    +R  +++
Sbjct: 68  IAALRPADFRGFLASRRRDGVQSRSLARGLAGIRSFLRFLERRGEVNAAASAAVRPPRQA 127

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT-PQNI 181
            SLP+ ++ K A+ +    L        W++ARN+A+L LLYGCGLRISEALSLT     
Sbjct: 128 RSLPKPVSSKDAIDVTSGEL--AMESEPWLEARNAAVLTLLYGCGLRISEALSLTGAMAP 185

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
                TLR+ GKG K RIVP+LP+V +A+  Y  LCP+ ++     PLF G RG PLNP 
Sbjct: 186 RTGTKTLRVVGKGGKERIVPILPAVCQAVEHYLKLCPYAISPG--GPLFLGARGGPLNPR 243

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + Q  + +LR  LGLP S T H LRHSFATHLL+ GGDLR+IQ +LGH  L++TQIYT +
Sbjct: 244 MIQLAMARLRGALGLPDSATPHALRHSFATHLLAGGGDLRTIQELLGHASLASTQIYTEI 303

Query: 302 NSKNGGDWMMEIYDQTHPS 320
           +S +    ++  YD+ HP 
Sbjct: 304 DSAH----LLAAYDKAHPR 318


>gi|126725541|ref|ZP_01741383.1| site-specific tyrosine recombinase XerC [Rhodobacterales bacterium
           HTCC2150]
 gi|126704745|gb|EBA03836.1| site-specific tyrosine recombinase XerC [Rhodobacterales bacterium
           HTCC2150]
          Length = 306

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 124/313 (39%), Positives = 180/313 (57%), Gaps = 9/313 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +++       QNWL +++     ++ TL +Y  D   FL FL  +  E   I  ++ +  
Sbjct: 3   LIAPAQRDALQNWLSHIKSLDDAAQNTLDAYTRDLTSFLSFLTQHFGETSGISALKAVGQ 62

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            +IR++++  R   +  RSL R LS +KSF ++  + +    + +L+ R  K    LPR 
Sbjct: 63  RDIRSWMAFERGSGVSARSLARKLSAVKSFYRWFGEHEGFEPTAVLSARTPKFQKKLPRP 122

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           +    A  ++D V L +  E  W+  R++A++ +LYGCGLRISEAL L   +       L
Sbjct: 123 IAPDAARAMIDTVPLQS--EKNWVGLRDTAVVTVLYGCGLRISEALGLLGSDAPL-PDVL 179

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKG K RIVP++P+ ++A+ EY   CP  +  +   PLFRGIRG  LNP + Q  + 
Sbjct: 180 RILGKGGKERIVPVIPAAKRAVDEYIRACPHPIEADS--PLFRGIRGGALNPRIIQGVVA 237

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           + R  LGLP + T H LRHSFATHLL  GGDLRSIQ +LGH  LSTTQ YT V++     
Sbjct: 238 KARMQLGLPATATPHALRHSFATHLLEAGGDLRSIQELLGHASLSTTQAYTAVDTAR--- 294

Query: 309 WMMEIYDQTHPSI 321
            +ME+YD+ HP  
Sbjct: 295 -LMEVYDKAHPKA 306


>gi|325956642|ref|YP_004292054.1| tyrosine recombinase xerD [Lactobacillus acidophilus 30SC]
 gi|325333207|gb|ADZ07115.1| tyrosine recombinase xerD [Lactobacillus acidophilus 30SC]
          Length = 301

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 97/316 (30%), Positives = 167/316 (52%), Gaps = 18/316 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + + EL  +  ++L+  ++ERGLS  T+ +Y  D  ++L F+          +       
Sbjct: 1   MTNNELQDQIDDYLRFSQVERGLSTNTISAYRQDLEEYLSFIKKEGMSSWPTE------A 54

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           +++ AF++++R       S+ R +S ++ F ++L ++ I   + +L +   KK   LP A
Sbjct: 55  SDVDAFLARQRDLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTA 114

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+ ++   L++          + +  R+ AIL  LY  G+R+SE ++L  Q+I +D   +
Sbjct: 115 LSGEEVNRLLEQ-----PDVEQKLGLRDRAILETLYATGMRVSELINLELQDIHEDLGLI 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQR 245
           R+ GKG K R++P+ P     I +Y       L   +      LF   RG  L      +
Sbjct: 170 RVLGKGSKERLIPISPVALHWIDKYQKQVRDPLILKSGKNDEHLFLNNRGGKLTRQAIWQ 229

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            I++  +  G+    T HTLRH+FATHLL NG DLR +Q ILGH  +STTQIYTN++ K+
Sbjct: 230 MIKKYCQMAGITKDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKH 289

Query: 306 GGDWMMEIYDQTHPSI 321
               ++++Y +THP +
Sbjct: 290 ----ILQVYQKTHPRL 301


>gi|16801135|ref|NP_471403.1| hypothetical protein lin2069 [Listeria innocua Clip11262]
 gi|34222947|sp|Q92A53|XERD_LISIN RecName: Full=Tyrosine recombinase xerD
 gi|16414570|emb|CAC97299.1| lin2069 [Listeria innocua Clip11262]
 gi|313618111|gb|EFR90213.1| tyrosine recombinase XerD [Listeria innocua FSL S4-378]
 gi|313623100|gb|EFR93374.1| tyrosine recombinase XerD [Listeria innocua FSL J1-023]
          Length = 297

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 93/306 (30%), Positives = 154/306 (50%), Gaps = 15/306 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             ++L  L +E+GLS  T+++YE D   F+ ++    +   T+     L   +I  F++ 
Sbjct: 5   IDDFLHFLIVEKGLSANTIKAYERDLHYFVSYM----DTSRTLTDPDTLERNDIVGFMAF 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R +    RS+ R ++ ++SF  YL      +   ++ +   K++ SLP+ LN      L
Sbjct: 61  ARKEGKSPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQSLPKVLNLDDVEKL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L +S  +  +  R+ A+L +LY  GLR++E + L   ++      ++  GKGDK 
Sbjct: 121 -----LSSSDTSTPLGLRDQAMLEILYATGLRVTELVKLKMDDLHLQMGFIQTIGKGDKE 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           RI+PL  +    + +Y +     L         +F    G+ L    F + ++ + +  G
Sbjct: 176 RIIPLGKTATTVLEQYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESG 235

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT+V        + ++Y 
Sbjct: 236 IEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLR----LKDVYK 291

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 292 QFHPRA 297


>gi|114706518|ref|ZP_01439419.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506]
 gi|114537910|gb|EAU41033.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506]
          Length = 319

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 140/318 (44%), Positives = 195/318 (61%), Gaps = 9/318 (2%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            S  +++E   WL+ L  ER  S+ T+++YE D RQF+IFL  Y      +     L   
Sbjct: 8   ASKSVMREISAWLEALRNERQASEETVEAYERDVRQFMIFLTDYHARPSELDDFADLKPM 67

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++R+F++ RR    G RSL R LSGI+SFL++L+KR + + +    MR  K++  LPR L
Sbjct: 68  DLRSFLAARRRDGAGARSLGRGLSGIRSFLRHLEKRGLASSAGAKAMRAPKQTKGLPRPL 127

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STL 188
           +   AL + +           W+ AR+ A+L LLYGCGLRISEAL+L    + D+   ++
Sbjct: 128 SVAGALDVTEE--ADAFSTEPWVGARDVAVLTLLYGCGLRISEALTLRGDALTDEMARSM 185

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            I+GKG K R+VPL+P+V +A+  Y  LCP DL+     PLFRG+RG PL P + QR + 
Sbjct: 186 TIRGKGGKTRLVPLIPAVHEAVATYRRLCPHDLDAG--HPLFRGVRGGPLRPQIVQRNMA 243

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +LR   GLP S T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ YT V+     D
Sbjct: 244 RLRGAFGLPPSATPHALRHSFATHLLAAGGDLRTIQDLLGHASLSTTQAYTAVD----AD 299

Query: 309 WMMEIYDQTHPSITQKDK 326
            ++ +YD  HP   +K +
Sbjct: 300 RLLSVYDNAHPRARRKAE 317


>gi|138895887|ref|YP_001126340.1| site-specific tyrosine recombinase XerD [Geobacillus
           thermodenitrificans NG80-2]
 gi|196248777|ref|ZP_03147477.1| tyrosine recombinase XerD [Geobacillus sp. G11MC16]
 gi|134267400|gb|ABO67595.1| DNA integration/recombination/invertion protein [Geobacillus
           thermodenitrificans NG80-2]
 gi|196211653|gb|EDY06412.1| tyrosine recombinase XerD [Geobacillus sp. G11MC16]
          Length = 298

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 89/311 (28%), Positives = 155/311 (49%), Gaps = 16/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  E +++L  L +ER L+  T+ SYE D ++++ +L    +    ++   ++    I  
Sbjct: 1   MEHELKDFLHYLTVERNLAHNTIISYERDLKKYVHYLREVEQ----LEAWGEVERLHILH 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+     Q    R++ R L+ I+SF ++L + K+  +   +++   +   +LP+ L+ ++
Sbjct: 57  FLKFLSEQGQSARTIARHLASIRSFHQFLLREKMAAQDPTVHIETPQFERTLPKVLSVEE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+                R+ A+L +LY  G+R+SE + L   ++      +R  GK
Sbjct: 117 VEALL-----AAPQTNTPFGLRDKAMLEVLYATGMRVSELVQLNLGDVHLTMGFVRCYGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           G K RIVP+     +A+  Y +     L          LF    G+ L    F + +++L
Sbjct: 172 GRKERIVPIGRMALEALARYLEYGRPQLVNPRKRATEALFLNHYGQRLTRQGFWKILKRL 231

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  G+    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V        +
Sbjct: 232 SKEAGIEKELTPHTLRHSFATHLLENGADLRAVQELLGHADISTTQMYTHVTKTR----L 287

Query: 311 MEIYDQTHPSI 321
            ++Y Q HP  
Sbjct: 288 KDVYKQYHPRA 298


>gi|229134899|ref|ZP_04263706.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST196]
 gi|228648574|gb|EEL04602.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST196]
          Length = 296

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 160/309 (51%), Gaps = 14/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + ++++  + +E+GL+K T+ SYE D + ++ +L    + K    T  +++   I  
Sbjct: 1   MEDQLKDFIHYMIVEKGLAKNTVVSYERDLKSYVKYLQNVEQTK----TFHEVTRLHIVN 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+   +      ++L R ++ I+SF ++L + +       +++   +    LP+ L+  +
Sbjct: 57  FLQHLKENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSIDE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+      T+        R+ A+L LLY  GLR+SE ++L  +++      +R  GK
Sbjct: 117 VEALL-----QTTKTASAFGIRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G+K RI+PL     +AI +Y +    +L        LF    G  L+   F + +++L +
Sbjct: 172 GNKERIIPLGSLATEAIQKYIEKGRRELMGKKAVDALFLNHHGNRLSRQGFWKILKRLAK 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + +
Sbjct: 232 EANIAKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKD 287

Query: 313 IYDQTHPSI 321
           +Y Q HP  
Sbjct: 288 VYKQFHPRA 296


>gi|317128498|ref|YP_004094780.1| tyrosine recombinase XerD [Bacillus cellulosilyticus DSM 2522]
 gi|315473446|gb|ADU30049.1| tyrosine recombinase XerD [Bacillus cellulosilyticus DSM 2522]
          Length = 296

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 89/309 (28%), Positives = 160/309 (51%), Gaps = 14/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +E + +L  L +ERGLSK T ++Y  D   ++ ++  +  +K     + +++   I  
Sbjct: 1   MQQELREFLHYLIVERGLSKNTTEAYNRDLTAYIQYIESHENKK----DVNEINRPAIMQ 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++   +       ++ R++S I++F ++L + ++++    +++   K+   LP+ L+  +
Sbjct: 57  YLYFLKDNGRAPTTITRNISSIRAFHQFLLRERLSSSDPTIHISRPKQEKKLPKILSTTE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+       S +   ++ RN A+L +LY  G+R+SE   L+  ++  D   +R  GK
Sbjct: 117 VEALI-----SASVKNPALNIRNKAMLEVLYATGIRVSELCQLSLSDLHLDMGFIRCIGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G+K RI+P+     KA+  Y     P  L       LF    G  ++   F + I+ L +
Sbjct: 172 GNKERIIPIGNVATKALETYLQKSRPTLLKKQAHSILFVNHHGNKMSRQGFWKIIKLLAK 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT++        M +
Sbjct: 232 EANIKKELTPHTLRHSFATHLLENGADLRAVQEMLGHVDISTTQIYTHITKTR----MKD 287

Query: 313 IYDQTHPSI 321
           +Y + HP  
Sbjct: 288 VYSRYHPRA 296


>gi|239833042|ref|ZP_04681371.1| tyrosine recombinase XerC [Ochrobactrum intermedium LMG 3301]
 gi|239825309|gb|EEQ96877.1| tyrosine recombinase XerC [Ochrobactrum intermedium LMG 3301]
          Length = 315

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 140/314 (44%), Positives = 201/314 (64%), Gaps = 9/314 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
               +L   R+ WL+ L+  R LS+ TL +YE DTRQFL FL  +  E  +++ +  L  
Sbjct: 10  PARADLAAAREEWLKTLKDARRLSENTLDAYERDTRQFLNFLTGHLGEPPSLKDVGNLRI 69

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++R+F++ RR + +G R+L R L+G++S L++L+KR +   +    MR  ++  SLP+ 
Sbjct: 70  ADLRSFLASRRNEGVGARTLGRGLAGVRSLLRHLEKRGLANAAGASAMRAPRQPKSLPKP 129

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-T 187
           L  + A  +V         E  WI ARN+A+L LLYGCGLRISEAL LT   + D  + +
Sbjct: 130 LTAEDARRVVAAD--GQLAEEPWIAARNAAVLTLLYGCGLRISEALGLTGDALSDSTALS 187

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           + I GKG+K R+VPLLP V +A+ +Y  LCPFDL+ +   PLFRG +G  L+  + QR +
Sbjct: 188 ITITGKGNKARLVPLLPVVHRAVAQYRTLCPFDLSADK--PLFRGAKGGILHAAIIQREM 245

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++LR  LGLP S T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ+YT V+++   
Sbjct: 246 QKLRAGLGLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTER-- 303

Query: 308 DWMMEIYDQTHPSI 321
             ++E+YD+ HP  
Sbjct: 304 --LLEVYDKAHPRA 315


>gi|39933259|ref|NP_945535.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris
           CGA009]
 gi|39652884|emb|CAE25626.1| putative site-specific recombinase, INTEGRASE/RECOMBINASE RIPX
           (xerC) [Rhodopseudomonas palustris CGA009]
          Length = 371

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 131/314 (41%), Positives = 188/314 (59%), Gaps = 8/314 (2%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            + +L  E   WL +L  ER LS  TL++Y  D RQFL FLA +   ++T+    +L  T
Sbjct: 64  AAADLTAEMTKWLSHLRAERRLSGKTLEAYARDVRQFLQFLAGHWGGEVTLGRFARLEAT 123

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++RAF++ RR  +I  RSL R+L+G++SF ++L++        + ++R  K   SLP+ L
Sbjct: 124 DVRAFMAARRADEIAGRSLMRALAGMRSFGRFLEREGKGRVGALASVRAPKIKKSLPKPL 183

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQST 187
               A  L D           W+  R++A++ LLYG GLRISEAL L  +++       T
Sbjct: 184 PIAAAKRLADADERAGEERETWVLIRDAAVMALLYGSGLRISEALGLKRRDVPAPGKGDT 243

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           L + GKG+K R+VP+L +V   I EY   CP+  NL    P+F G RG PL+P + Q  +
Sbjct: 244 LIVHGKGNKTRMVPVLQNVLAQIAEYAAACPY--NLPPDGPMFVGARGGPLSPRIIQLAM 301

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +LR  LGLP S T H LRHSFATHLLS GGDLR+IQ +LGH  LSTTQ+YT ++++   
Sbjct: 302 ERLRGGLGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYTGIDTER-- 359

Query: 308 DWMMEIYDQTHPSI 321
             ++E+Y+  HP  
Sbjct: 360 --LLEVYNSAHPRA 371


>gi|315038190|ref|YP_004031758.1| tyrosine recombinase XerD [Lactobacillus amylovorus GRL 1112]
 gi|312276323|gb|ADQ58963.1| tyrosine recombinase XerD [Lactobacillus amylovorus GRL 1112]
          Length = 301

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 97/316 (30%), Positives = 167/316 (52%), Gaps = 18/316 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + + EL  +  ++L+  ++ERGLS  T+ +Y  D  ++L F+          +       
Sbjct: 1   MTNNELQDQIDDYLRFSQVERGLSTNTISAYRQDLEEYLSFIKKEGMSSWPTE------A 54

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           +++ AF++++R       S+ R +S ++ F ++L ++ I   + +L +   KK   LP A
Sbjct: 55  SDVDAFLARQRDLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTA 114

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+ ++   L++          + +  R+ AIL  LY  G+R+SE ++L  Q+I +D   +
Sbjct: 115 LSREEVNRLLEQ-----PDVEQKLGLRDRAILETLYATGMRVSELINLELQDIHEDLGLI 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQR 245
           R+ GKG K R++P+ P     I +Y       L   +      LF   RG  L      +
Sbjct: 170 RVLGKGSKERLIPISPVALHWIDKYQKQVRDPLILKSGKNDEHLFLNNRGGKLTRQAIWQ 229

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            I++  +  G+    T HTLRH+FATHLL NG DLR +Q ILGH  +STTQIYTN++ K+
Sbjct: 230 MIKKYCQMAGITKDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKH 289

Query: 306 GGDWMMEIYDQTHPSI 321
               ++++Y +THP +
Sbjct: 290 ----ILQVYQKTHPRL 301


>gi|163745808|ref|ZP_02153167.1| site-specific tyrosine recombinase XerC [Oceanibulbus indolifex
           HEL-45]
 gi|161380553|gb|EDQ04963.1| site-specific tyrosine recombinase XerC [Oceanibulbus indolifex
           HEL-45]
          Length = 314

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 120/323 (37%), Positives = 185/323 (57%), Gaps = 9/323 (2%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M     P ++S       Q WL +    +G ++ T+ +Y  D  +FL F+  +  +   +
Sbjct: 1   MSAEANPLLISPAARDALQTWLTHQSALKGAAENTVTAYRGDVTEFLAFMTLHKGDTQGL 60

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             + +++ +++RA++++ R+  +G RS+ R LS +K+F ++L +R+    + +L  R+ K
Sbjct: 61  GALAKITISDMRAWMARMRSGGVGSRSVARKLSAVKAFYRWLAEREGFEPTAVLLTRSPK 120

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LPR L E  A  L+D   + T     W+ AR+ A+L +L+GCGLRISEAL+L   +
Sbjct: 121 FQKKLPRPLAEDAARALIDC--VETQARAPWVAARDVAVLTMLWGCGLRISEALALKGGD 178

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                S+LRI GKG K R+VP+LP+ R A+ +Y  +CP     +   PLFR IRG  L  
Sbjct: 179 APL-PSSLRILGKGGKERVVPVLPAARAAVEDYLAVCPHPQEPHA--PLFRAIRGGALGA 235

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               + +   R  LGLP + T H +RHSFATHLL  GGDLR+IQ +LGH  LSTTQ YT 
Sbjct: 236 RAVAQVMADARMQLGLPATATPHAMRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYTA 295

Query: 301 VNSKNGGDWMMEIYDQTHPSITQ 323
           V++      +ME+Y+  HP   +
Sbjct: 296 VDTAR----LMEVYNNAHPKAGR 314


>gi|146308415|ref|YP_001188880.1| site-specific tyrosine recombinase XerD [Pseudomonas mendocina ymp]
 gi|145576616|gb|ABP86148.1| tyrosine recombinase XerD subunit [Pseudomonas mendocina ymp]
          Length = 298

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 96/304 (31%), Positives = 149/304 (49%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+ L +E+GLS  T  +Y  D   F  +L     +      ++ +    I   ++ 
Sbjct: 9   IERFLETLWLEKGLSAHTRAAYRSDLEHFNHWLDGRGLQ------LQCIGRDAILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  Q    RS  R LSG++ F ++L +  +  E   L +   +    LP++L+E     L
Sbjct: 63  RLEQGYQARSTARFLSGVRGFYRFLLREGVVEEDPSLQVELPQIGRPLPKSLSEADVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +             I  R+ A+L +LY CGLR+SE + LT + +   Q  LR+ GKG K 
Sbjct: 123 L-----QAPDLDDPIGLRDRAMLEVLYACGLRVSELVGLTLEQVNLRQGVLRVFGKGSKE 177

Query: 198 RIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       I  Y  +  P  L       LF  +RG+ +    F   I+   +  G+
Sbjct: 178 RLVPLGEEAIAWIERYSREARPLLLGGKPSDVLFPSLRGEQMTRQTFWHRIKHQAKVAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT++        + E++ +
Sbjct: 238 GKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHI----ARARLQELHAK 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|90421704|ref|YP_530074.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris
           BisB18]
 gi|90103718|gb|ABD85755.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris
           BisB18]
          Length = 324

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 131/314 (41%), Positives = 186/314 (59%), Gaps = 8/314 (2%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            + +L+ E   WL  L  ER LS  TL++Y  D RQ L FL  + + +++I+    L   
Sbjct: 17  AAADLVAEATRWLAYLRSERRLSPKTLEAYTRDLRQCLTFLNEHWDAQVSIKRFAALEAG 76

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +IRAF++ RR  +IG RSL R+L+G++SF ++L++        +  +R  K   SLP+ +
Sbjct: 77  DIRAFMASRRADEIGGRSLMRALAGLRSFGRFLEREGKGKVGALSAIRAPKVGKSLPKPI 136

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--DQST 187
               A  L D       +   WI AR++A++ LLYG GLRISEAL L  +++       T
Sbjct: 137 QIAGAKRLADATERAGENREPWIWARDAAVMALLYGSGLRISEALGLKRRDVPLPGKGDT 196

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           L + GKG+K R+VP+L +V   I +Y  +CP  L    Q P+F G RG PL+P + Q  +
Sbjct: 197 LIVTGKGNKTRMVPVLQNVLSLIQDYVAVCPHPL--PQQGPIFVGARGGPLSPRIIQLTM 254

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +LR  LGLP S T H LRHSFATHLLS GG+LR+IQ +LGH  LSTTQIYT ++S+   
Sbjct: 255 ERLRGALGLPDSATPHALRHSFATHLLSRGGELRAIQELLGHTSLSTTQIYTGIDSER-- 312

Query: 308 DWMMEIYDQTHPSI 321
             + E+Y   HP  
Sbjct: 313 --LFEVYKTAHPRA 324


>gi|192288610|ref|YP_001989215.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris
           TIE-1]
 gi|192282359|gb|ACE98739.1| integrase family protein [Rhodopseudomonas palustris TIE-1]
          Length = 323

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 131/314 (41%), Positives = 188/314 (59%), Gaps = 8/314 (2%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            + +L  E   WL +L  ER LS  TL++Y  D RQFL FLA +   ++T+    +L  T
Sbjct: 16  AAADLTAEMTKWLSHLRAERRLSGKTLEAYARDVRQFLQFLAEHWGGEVTLGRFARLEAT 75

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++RAF++ RR  +I  RSL R+L+G++SF ++L++        + ++R  K   SLP+ L
Sbjct: 76  DVRAFMAARRADEIAGRSLMRALAGMRSFGRFLEREGKGRVGALASVRAPKIKKSLPKPL 135

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQST 187
               A  L D           W+  R++A++ LLYG GLRISEAL L  +++       T
Sbjct: 136 PIAAAKRLADADERAGEERETWVLIRDAAVMALLYGSGLRISEALGLKRRDVPAAGKGDT 195

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           L + GKG+K R+VP+L +V   I EY   CP+  NL    P+F G RG PL+P + Q  +
Sbjct: 196 LIVHGKGNKTRMVPVLQNVLAQIAEYAAACPY--NLPPDGPMFVGARGGPLSPRIIQLAM 253

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +LR  LGLP S T H LRHSFATHLLS GGDLR+IQ +LGH  LSTTQ+YT ++++   
Sbjct: 254 ERLRGGLGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYTGIDTER-- 311

Query: 308 DWMMEIYDQTHPSI 321
             ++E+Y+  HP  
Sbjct: 312 --LLEVYNSAHPRA 323


>gi|227893483|ref|ZP_04011288.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047]
 gi|227864708|gb|EEJ72129.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047]
          Length = 303

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 100/317 (31%), Positives = 174/317 (54%), Gaps = 18/317 (5%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
            +V+ +L  +  ++L+  ++ERGLS  T+ +Y  D  ++L F+     EK  + +     
Sbjct: 2   AMVNSKLQDQIDDYLRYSQVERGLSSNTISAYRQDLEEYLSFI-----EKEGMPSW-PTE 55

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
            +++ AF++++R       S+ R +S ++ F ++L ++ I   + +L +   KK   LP 
Sbjct: 56  ASDVDAFLARQRDLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPT 115

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           AL +++   L++          + +  R+ AIL  LY  G+R+SE ++L  Q++ DD   
Sbjct: 116 ALTQEEVNKLLEQ-----PDVKRKLGLRDRAILETLYATGMRVSELINLELQDLHDDLGL 170

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI---QLPLFRGIRGKPLNPGVFQ 244
           +R+ GKG K R++P+ P     I +Y       L L++      +F   RGK L      
Sbjct: 171 VRVIGKGSKERLIPISPVALNWIKKYEKEVRDPLILHVGQNDEHIFLNSRGKMLTRQAIW 230

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + I++  +  G+    T HTLRH+FATHLL NG DLR +Q ILGH  +STTQIYTN++ K
Sbjct: 231 QMIKKYCQMAGIVKDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQK 290

Query: 305 NGGDWMMEIYDQTHPSI 321
           +    ++++Y +THP +
Sbjct: 291 H----ILQVYQKTHPRL 303


>gi|254460911|ref|ZP_05074327.1| tyrosine recombinase XerC [Rhodobacterales bacterium HTCC2083]
 gi|206677500|gb|EDZ41987.1| tyrosine recombinase XerC [Rhodobacteraceae bacterium HTCC2083]
          Length = 306

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 131/313 (41%), Positives = 196/313 (62%), Gaps = 9/313 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++S +     ++WL+  +  +G S+ T+++Y  DT  F+ F+  Y  E   +  + +++ 
Sbjct: 3   LISPQARDALEHWLETQKSLKGGSENTIKAYSADTADFIGFMTSYKSEPQGLAALARITT 62

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++RA++++ R  ++  RSL R LS +KSF ++L +R+    + +L +R  K    LPR 
Sbjct: 63  RDMRAWMAQTRGDEVSARSLARKLSSVKSFYRWLAEREGFEPTAVLTIRAPKFQKKLPRP 122

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L  + A  +++ V   T+H   W+ AR+SA+L LLYGCGLRISEAL LT  ++    + L
Sbjct: 123 LAVEAAKAMIETVEYQTAH--TWVAARDSAVLTLLYGCGLRISEALGLTGADVPLPTA-L 179

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKG K R+VP+LP+ R+A+  Y ++CP+ L  N   PLFRGIRG  LNP   Q  + 
Sbjct: 180 RILGKGGKERVVPVLPAAREAVQAYLNICPYPLEPNA--PLFRGIRGGALNPRAVQSVMA 237

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           + R  LGLP + T H +RHSFATHLLS GGDLRSIQ +LGH  LSTTQ YT V++     
Sbjct: 238 KARMQLGLPATATPHAMRHSFATHLLSAGGDLRSIQELLGHSSLSTTQAYTAVDTAR--- 294

Query: 309 WMMEIYDQTHPSI 321
            +ME+Y++ HP  
Sbjct: 295 -LMEVYERAHPKA 306


>gi|319404836|emb|CBI78437.1| integrase/recombinase XerC [Bartonella rochalimae ATCC BAA-1498]
          Length = 321

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 140/314 (44%), Positives = 192/314 (61%), Gaps = 9/314 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
                LL  R+NWL +L   R ++  T  +YE DTRQFL FL  +   + T+  +  L  
Sbjct: 16  PADHTLLIARKNWLDHLTQTRRMALHTAVAYERDTRQFLFFLCQHLGYQPTLDDLADLRV 75

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++RA+++ RRTQ I  RSL R+++ ++SF  YL + K+        +R  K   SLP+ 
Sbjct: 76  ADLRAYLAYRRTQNISARSLSRNMASLRSFFNYLSREKLVNVPAAKLVRTPKHPKSLPKP 135

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQST 187
           L  + AL +V     +      WI ARN+AIL LLYGCG+RISEAL+LTP+        +
Sbjct: 136 LTIESALRIVKEE--NQQETEPWIIARNTAILILLYGCGMRISEALALTPEQFADPSIKS 193

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           L + GKG K R++PL+P V KAI  Y   CP+ L      P+F G+RGKPL P + QR +
Sbjct: 194 LSVNGKGGKTRLIPLIPIVHKAIENYLKCCPYPLV--NTQPIFLGVRGKPLQPAIIQRTV 251

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           + LR  LGLP +TT H LRHSFATHLLS GGDLR+IQ +LGH  LSTTQIYT++++ +  
Sbjct: 252 QNLRARLGLPETTTPHALRHSFATHLLSRGGDLRTIQELLGHACLSTTQIYTHIDTNH-- 309

Query: 308 DWMMEIYDQTHPSI 321
             ++EIY + HP  
Sbjct: 310 --LLEIYQKAHPRA 321


>gi|84501636|ref|ZP_00999808.1| tyrosine recombinase [Oceanicola batsensis HTCC2597]
 gi|84390257|gb|EAQ02816.1| tyrosine recombinase [Oceanicola batsensis HTCC2597]
          Length = 310

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 123/316 (38%), Positives = 190/316 (60%), Gaps = 9/316 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
            +S        +WL  ++  RG S+ T+ +Y  D   +L F+  +      I  + +++ 
Sbjct: 4   AISDAARDALADWLSGMKSLRGASEATIGAYRRDLVDYLSFMTEHLGGPQGIAALGRVTT 63

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           +++RA++++ R   +G RSL R LS +K+F ++L +R+    + +L+ R  +   SLPR 
Sbjct: 64  SDMRAWMARERGAGLGARSLARKLSAVKTFYRWLAEREGLEVTPVLSARAPRYQRSLPRP 123

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L E  A  +++   + +S    W+ AR++A++ LLYGCGLRISEALSLT  ++    S L
Sbjct: 124 LAEDAARAMIET--VGSSDTRPWVAARDAAVVTLLYGCGLRISEALSLTVDDLPLGDS-L 180

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI+GKG K RIVPL+   R+A+  Y ++ P  +      PLFR IRG  L+    Q+ + 
Sbjct: 181 RIRGKGGKERIVPLIAPARQAVEAYLEIMPHPVTSGA--PLFRAIRGGALSARTVQKSME 238

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           + R  LGLP + T H +RHSFATHLLS GGDLRSIQ +LGH  LSTTQ+YT V++     
Sbjct: 239 RARMGLGLPATATPHAMRHSFATHLLSAGGDLRSIQDLLGHASLSTTQVYTGVDTAR--- 295

Query: 309 WMMEIYDQTHPSITQK 324
            +ME+Y+ +HP   ++
Sbjct: 296 -LMEVYEASHPRAARR 310


>gi|254284183|ref|ZP_04959151.1| tyrosine recombinase XerD [gamma proteobacterium NOR51-B]
 gi|219680386|gb|EED36735.1| tyrosine recombinase XerD [gamma proteobacterium NOR51-B]
          Length = 299

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 149/305 (48%), Gaps = 15/305 (4%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E   ++  L IERGLS  TL +Y  D RQF  FL     ++  I +++      ++ F++
Sbjct: 8   EIDQFIDALWIERGLSANTLAAYRRDLRQFADFL-----DERGIASLKAADAGALQGFLA 62

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            R      +RS  R LS ++ F +Y  +           + + +   SLP++++E     
Sbjct: 63  SRLKSGHSNRSAARFLSTLRGFYRYHLRENRIDRDPTQFIDSPRLGRSLPKSISEADVER 122

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L     L   +    ID R+  +L LLY CGLR++E   L    +  +Q  +R+ GKGDK
Sbjct: 123 L-----LAAPNVEDPIDFRDRTMLELLYACGLRVTELTGLQVSQLSLNQGVVRVVGKGDK 177

Query: 197 IRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R++P+       + ++        L   +   LF   RG  +    F   I+   +  G
Sbjct: 178 ERLIPIGEEALSWVQQFLAGPRQVLLKERMSEVLFPSNRGGQMTRQTFWYRIKLHAKRAG 237

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + HTLRH+FATHL+++G DLR +Q +LGH  L+TTQIYT+V        M +++ 
Sbjct: 238 IEAHLSPHTLRHAFATHLINHGADLRVVQMLLGHSDLTTTQIYTHV----ARHRMQQLHA 293

Query: 316 QTHPS 320
           Q HP 
Sbjct: 294 QHHPR 298


>gi|254481807|ref|ZP_05095050.1| tyrosine recombinase XerD [marine gamma proteobacterium HTCC2148]
 gi|214037936|gb|EEB78600.1| tyrosine recombinase XerD [marine gamma proteobacterium HTCC2148]
          Length = 298

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 98/309 (31%), Positives = 152/309 (49%), Gaps = 15/309 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
            +  E + ++  + +E+GLS  TL SY  D RQF  +LA   +      ++      E++
Sbjct: 3   AVHPEIERYIDAMWMEKGLSDNTLSSYRRDLRQFNDWLAKSKK-----SSVISTDRAELQ 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           A++  R  Q    RS  R +S  + F KYL +    T    L++ + K    LPR+L+E 
Sbjct: 58  AYLGARLQQGQSQRSTARFMSCARGFYKYLLREGRLTVDPTLDVDSPKLGRPLPRSLSEG 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D            ++ R+  +L +LY CGLR+SE   L    I  +Q  +R+ G
Sbjct: 118 DVDKLLD-----APDLDIALEYRDRTMLEMLYACGLRVSELTGLQINQISINQGVVRVFG 172

Query: 193 KGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG K R+VP+       +  Y        L       +F   RG+ +    F   I+   
Sbjct: 173 KGSKERLVPMGEEALAWLQGYLAGPRAELLKGIPSDVVFPSKRGRQMTRQTFWYRIKIYA 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +  G+  + + HTLRH+FATHLL++G DLR +Q +LGH  L+TTQIYT+V  +     M 
Sbjct: 233 KRAGIKQNLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLTTTQIYTHVAKQR----MQ 288

Query: 312 EIYDQTHPS 320
           E++ Q HP 
Sbjct: 289 ELHAQHHPR 297


>gi|86747397|ref|YP_483893.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris
           HaA2]
 gi|86570425|gb|ABD04982.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris HaA2]
          Length = 351

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 130/327 (39%), Positives = 188/327 (57%), Gaps = 13/327 (3%)

Query: 2   EGNNLPEIV-----SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE 56
           +   +P  +     + +L  E   WL +L  ER LS  TL++Y  D RQFL FLA +   
Sbjct: 31  KSQPMPPPIDLPCAAADLNAEFTRWLSHLRAERRLSGKTLEAYARDLRQFLFFLAGHWGG 90

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           ++T+    +L  T++RAF++ RR   I  RSL R+L+G++SF ++L++    +   +  +
Sbjct: 91  EVTLGRFARLETTDVRAFMAARRGDAIAGRSLMRALAGLRSFGRFLEREGKGSVGALSAV 150

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           R  K   SLP+ +    A  L D           W+  R++A++ LLYG GLRISEAL L
Sbjct: 151 RAPKIKKSLPKPIQIAAAKRLADADERAGEDRETWVLVRDAAVMALLYGSGLRISEALGL 210

Query: 177 TPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
             +++       TL + GKG+K R+VP+L +V   I +Y   CP  L      P+F G R
Sbjct: 211 KRRDVPAPGKGDTLIVLGKGNKTRMVPVLDAVLAQIADYAKACPHPL--PPDGPMFVGAR 268

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G PL+P + Q  + +LR  LGLP S T H LRHSFATHLLS GGDLR+IQ +LGH  LST
Sbjct: 269 GGPLSPRIIQLAMERLRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLST 328

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           TQIYT ++++     ++E+Y   HP  
Sbjct: 329 TQIYTGIDTER----LLEVYASAHPRA 351


>gi|227513310|ref|ZP_03943359.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus buchneri
           ATCC 11577]
 gi|227083511|gb|EEI18823.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus buchneri
           ATCC 11577]
          Length = 295

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 92/307 (29%), Positives = 160/307 (52%), Gaps = 17/307 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           +  ++L  L +ERGLS+ T++SY+ D  + + F         T + I ++    I  ++ 
Sbjct: 4   QLADYLHFLRVERGLSENTIKSYQQDLSEAIHFFQK------TTKDISKVDQFLILNYLE 57

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             + +K    ++ R++S +++F +YL +  +  +  +L + + K+S +LP  L+  +   
Sbjct: 58  NLQQEKKSRNTVIRTVSSLRNFFRYLAQFGVVPDDPMLKVDSPKQSKTLPDVLSVSEV-- 115

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
              N LL   + +K +  R+ A+L  LY  GLR+SE ++L   ++      ++  GKGD+
Sbjct: 116 ---NKLLSMPNVSKPLGVRDRAMLETLYATGLRVSELVNLRLVDLHLPMKLIQTVGKGDR 172

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            RI+P+       I +Y      DL         +F    G+ L      + I++  +  
Sbjct: 173 ERIIPIGDVAIDWITQYLKTTRIDLLRKRTNTDFVFLNAHGRRLTRQAIWQMIKKYVKLA 232

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+    T HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT+++ K+    + E+Y
Sbjct: 233 GIKRHVTPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHISHKH----LTEVY 288

Query: 315 DQTHPSI 321
            + HP  
Sbjct: 289 QKFHPRA 295


>gi|49476240|ref|YP_034281.1| site-specific tyrosine recombinase XerC [Bartonella henselae str.
           Houston-1]
 gi|49239048|emb|CAF28348.1| Integrase /recombinase xerC [Bartonella henselae str. Houston-1]
          Length = 326

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 149/316 (47%), Positives = 196/316 (62%), Gaps = 9/316 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
             +  +L  R+NWL NL   R ++  T Q+YE DTRQFL FL  +     T + +  L  
Sbjct: 17  PAAPPVLAARKNWLDNLLGTRRMATYTAQAYERDTRQFLFFLCQHLGHTPTFKDLANLRV 76

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++RA+++ RR   I  RSL R ++GI+SF  YL +  I +      +R  K   SLP+ 
Sbjct: 77  IDLRAYLAYRRKHDISARSLSRGMAGIRSFFNYLSREGIASIPAAKLVRTPKHPKSLPKP 136

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST- 187
           LN K AL LV     +      WI ARN+A+L LLYGCG+RISEALSLTP+   D Q T 
Sbjct: 137 LNIKSALHLVKQE--NQQENEPWIIARNTAVLMLLYGCGMRISEALSLTPEQFSDPQKTS 194

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           L + GKG K R+VPL+  V +AI  Y   CP+ L  N   P+FRG RG PL P + Q+ +
Sbjct: 195 LFVTGKGGKTRLVPLIKVVYEAIQNYLKCCPYPLLDNQ--PMFRGARGGPLQPAIIQKTV 252

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           R LR YLGLP + T HTLRHSFATHLLS GGDLR+IQ +LGH  LSTTQ+YT+V++K+  
Sbjct: 253 RNLRAYLGLPETATPHTLRHSFATHLLSRGGDLRTIQELLGHACLSTTQVYTHVDTKH-- 310

Query: 308 DWMMEIYDQTHPSITQ 323
             ++EIY + HP   +
Sbjct: 311 --LLEIYQKAHPRSLK 324


>gi|114764172|ref|ZP_01443410.1| tyrosine recombinase [Pelagibaca bermudensis HTCC2601]
 gi|114543324|gb|EAU46340.1| tyrosine recombinase [Roseovarius sp. HTCC2601]
          Length = 308

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 125/312 (40%), Positives = 186/312 (59%), Gaps = 9/312 (2%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S       ++WL      +G S+ T+ +Y  D  +F++FL  +  E   +  + +++  
Sbjct: 5   ISPAARDALESWLTAARALKGNSENTITAYRADVLEFIVFLTSHHAEPQGLAPLARVTTP 64

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++RAF++  R Q +G R++ R LS +KSF ++L + +    + ++  R  K    LPR L
Sbjct: 65  DMRAFLAHLRGQGVGSRTMARKLSAVKSFYRWLAELEGFEPTAVMMARAPKFQKKLPRPL 124

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            E  A  ++D V +  +    WI AR++A++ LLYGCGLRISEAL L  +++   +S LR
Sbjct: 125 AEDAAKAMIDTVEMQAAD--SWIGARDAAVVTLLYGCGLRISEALGLRGRDLPLGES-LR 181

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           I GKG K RIVP+LP  R+A+  Y  LCP+D       P+FRG RG  LNP + Q+    
Sbjct: 182 IVGKGGKERIVPVLPIARRALDTYLRLCPYD--PEPDAPVFRGKRGGALNPRLIQKVTEA 239

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            R  LGLP + T H +RHSFATHLL+ GGDLR+IQ +LGH  LSTTQ YT+V+  +    
Sbjct: 240 ARLQLGLPATATPHAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYTSVDEVH---- 295

Query: 310 MMEIYDQTHPSI 321
           +M++Y  THP  
Sbjct: 296 LMKVYAATHPKA 307


>gi|116618399|ref|YP_818770.1| tyrosine recombinase XerD subunit [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097246|gb|ABJ62397.1| tyrosine recombinase XerD subunit [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 297

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 95/310 (30%), Positives = 165/310 (53%), Gaps = 16/310 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E+     ++L  + IERGLS+ T++SY  D  QF  +L     EK+    + Q+ +  I 
Sbjct: 3   EIDNAIVDYLHYIRIERGLSENTIKSYHQDLVQFGEYL---NGEKL---VLDQVDHIVIL 56

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           ++++K R     + S+ R ++ +++F  YL + K+   + + ++R  KK+  LP  L+ +
Sbjct: 57  SWLNKLRDLGKSNSSVIRMVTTLRNFFGYLVREKVVAHNPMNDVRPPKKAEHLPAVLSIE 116

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L+         E   +  RN  +L ++Y  GLR+SE ++L   ++      ++  G
Sbjct: 117 EIDRLL-----QAPIEDTPLGLRNRTLLEVMYATGLRVSELVNLKMSDLHLQLGLIQTLG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLR 251
           KGDK RI+P+       +  Y++     L  + + P +F   RG  ++     + I++L 
Sbjct: 172 KGDKERIIPIGEIAIDWLTRYFNESRIVLLKDKESPYVFLNDRGNQISRQGIWKIIKKLV 231

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+    + HTLRHSFATH+L NG DLR +Q +LGH  +STTQIYT+++ K     + 
Sbjct: 232 TTAGITKDVSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKR----LS 287

Query: 312 EIYDQTHPSI 321
           E+YD+ HP  
Sbjct: 288 EVYDEYHPRA 297


>gi|194016964|ref|ZP_03055577.1| tyrosine recombinase XerD [Bacillus pumilus ATCC 7061]
 gi|194011570|gb|EDW21139.1| tyrosine recombinase XerD [Bacillus pumilus ATCC 7061]
          Length = 296

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 100/307 (32%), Positives = 162/307 (52%), Gaps = 14/307 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            +  +++  + +ERGLS+ T+ SY+ D + +L FL  + +    +  I+ ++   I  ++
Sbjct: 3   DQLSDFIHFMTVERGLSENTIVSYKRDLQNYLSFLMTHEQ----LTDIKDVTRLHIIHYL 58

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            K + +    ++  R LS I+SF ++L + K+TT+    N+   K    LP+ L+  +  
Sbjct: 59  KKLKEEGKSSKTSVRHLSSIRSFHQFLLREKVTTDDPSWNIETQKTERKLPKVLSLGEVE 118

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+D     T ++    D R+ A+L LLY  G+R+SE L LT  ++      +R  GKG 
Sbjct: 119 KLLD-----TPNQHTPFDYRDKAMLELLYATGIRVSEMLDLTLADVHLTMGFIRCFGKGR 173

Query: 196 KIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K RIVP+  +   AI EY +      L       LF    GK ++   F + +++     
Sbjct: 174 KERIVPIGEAAASAIEEYLEKGRSKLLKKQPADALFLNHHGKKMSRQGFWKNLKKRALEA 233

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        + ++Y
Sbjct: 234 GIQKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----LKDVY 289

Query: 315 DQTHPSI 321
            + HP  
Sbjct: 290 HKFHPRA 296


>gi|88860260|ref|ZP_01134898.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas tunicata
           D2]
 gi|88817458|gb|EAR27275.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas tunicata
           D2]
          Length = 301

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 153/304 (50%), Gaps = 17/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+ + +E+G+S+ TL +Y  D  +F  F        I  + + ++   +++ +++ 
Sbjct: 15  LEQFLEAIWLEQGVSENTLAAYRTDLTKFAEF--------ILPKGLIEVEQQDVQYYLAH 66

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R       RS  R++S +K F +Y  + K  + + + ++   K   SLP+ L+E++   L
Sbjct: 67  RLDNGFKPRSTARTVSALKRFYQYYLREKQLSTNPMTHIGQPKAGQSLPKTLSEEEVGRL 126

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D          + I  R+ A+L LLY  GLR+SE + L  + I   Q+ + ++GKG+K 
Sbjct: 127 LD-----APDLEEPIGLRDKAMLELLYATGLRVSELVGLRIEQINLRQAVVFVKGKGNKE 181

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VP+       I  +       L  +    +F   RG  +    F   I+      G+ 
Sbjct: 182 RLVPMGEEALDCIERFIKEGRPQLIKHATDFVFPSKRGIGMTRQTFWHRIKHYALVAGIE 241

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + HTLRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++   
Sbjct: 242 SELSPHTLRHAFATHLINHGADLRVVQMMLGHSDLSTTQIYTHVAKER----LKSLHQAH 297

Query: 318 HPSI 321
           HP  
Sbjct: 298 HPRA 301


>gi|163843939|ref|YP_001628343.1| site-specific tyrosine recombinase XerC [Brucella suis ATCC 23445]
 gi|163674662|gb|ABY38773.1| tyrosine recombinase XerC [Brucella suis ATCC 23445]
          Length = 315

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 143/314 (45%), Positives = 196/314 (62%), Gaps = 9/314 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
               +L   R+ WL++L+  R LS  TL +YE DTRQFL FL  +  E  +++ I  L  
Sbjct: 10  PARADLAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRI 69

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++R+F++ RR    G R+L R L+G++S L++L+KR +   +    MR  ++  SLP+ 
Sbjct: 70  ADLRSFLANRRNDGAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKP 129

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQST 187
           L    A  LV         E  WI ARN+A+L LLYGCGLRISEAL L+          +
Sbjct: 130 LTADDARRLVSAD--GQMAEEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARS 187

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           + I GKG K R+VPLLP+V KA+ +Y  LCPFDL+     PLFRG +G PL+  + QR +
Sbjct: 188 MTITGKGSKTRLVPLLPAVHKAVAQYRALCPFDLSAGQ--PLFRGAKGGPLHAAIIQREM 245

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++LR  LGLP S T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ+YT V+++   
Sbjct: 246 QKLRAGLGLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQR-- 303

Query: 308 DWMMEIYDQTHPSI 321
             ++E+YD+THP  
Sbjct: 304 --LLEVYDKTHPRA 315


>gi|227431702|ref|ZP_03913732.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352526|gb|EEJ42722.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 298

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 94/310 (30%), Positives = 165/310 (53%), Gaps = 16/310 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E+     ++L  + IERGLS+ T++SY  D  QF  +L     EK+    + Q+ +  I 
Sbjct: 4   EIDNAIVDYLHYIRIERGLSENTIKSYHQDLVQFGEYL---NGEKL---VLDQVDHIVIL 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +++++ R     + S+ R ++ +++F  YL + K+   + + ++R  KK+  LP  L+ +
Sbjct: 58  SWLNQLRDLGKSNSSVIRMVTTLRNFFGYLVREKVVAHNPMNDVRPPKKAEHLPAVLSIE 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L     L    E   +  RN  ++ ++Y  GLR+SE ++L   ++      ++  G
Sbjct: 118 EIDRL-----LQAPIEDTPLGLRNRTLIEVMYATGLRVSELVNLKMSDLHLQLGLIQTLG 172

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLR 251
           KGDK RI+P+       +  Y++     L  + + P +F   RG  ++     + I++L 
Sbjct: 173 KGDKERIIPIGEIAIDWLTRYFNESRIVLLKDKESPYVFLNDRGNQISRQGIWKIIKKLV 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+    + HTLRHSFATH+L NG DLR +Q +LGH  +STTQIYT+++ K     + 
Sbjct: 233 TTAGITKDVSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKR----LS 288

Query: 312 EIYDQTHPSI 321
           E+YD+ HP  
Sbjct: 289 EVYDEYHPRA 298


>gi|157692850|ref|YP_001487312.1| site-specific tyrosine recombinase XerD [Bacillus pumilus SAFR-032]
 gi|157681608|gb|ABV62752.1| tyrosine recombinase [Bacillus pumilus SAFR-032]
          Length = 296

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 98/307 (31%), Positives = 161/307 (52%), Gaps = 14/307 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            +  +++  + +ERGLS+ T+ SY+ D + +L FL  + +    +  I+ ++   I  ++
Sbjct: 3   DQLSDFIHFMTVERGLSENTIVSYKRDLQNYLSFLMTHEQ----LSDIKDVTRLHIIHYL 58

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            + + +    ++  R LS I+SF ++L + K+T +    N+   K    LP+ L+  +  
Sbjct: 59  KQLKEEGKSSKTSVRHLSSIRSFHQFLLREKVTKDDPSWNIETQKTERKLPKVLSLGEVE 118

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+D     T ++    D R+ A+L LLY  G+R+SE L LT  ++      +R  GKG 
Sbjct: 119 KLLD-----TPNQHTPFDYRDKAMLELLYATGIRVSEMLDLTLADVHLTMGFIRCFGKGR 173

Query: 196 KIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K RIVP+  +   AI EY +      L       LF    GK ++   F + +++     
Sbjct: 174 KERIVPIGEAAASAIEEYLEKGRGKLLKKQPADALFLNHHGKKMSRQGFWKNLKKRALEA 233

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        + ++Y
Sbjct: 234 GIQKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----LKDVY 289

Query: 315 DQTHPSI 321
            + HP  
Sbjct: 290 HKFHPRA 296


>gi|153008277|ref|YP_001369492.1| site-specific tyrosine recombinase XerC [Ochrobactrum anthropi ATCC
           49188]
 gi|151560165|gb|ABS13663.1| tyrosine recombinase XerC [Ochrobactrum anthropi ATCC 49188]
          Length = 315

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 139/315 (44%), Positives = 201/315 (63%), Gaps = 11/315 (3%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
               +L   R+ WL+ L+  R LS+ TL++YE DTRQFL FL  +  E  +++ +  L  
Sbjct: 10  PARADLAAAREEWLKTLKDARRLSENTLEAYERDTRQFLNFLTGHLGEPPSLKDVGNLRI 69

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++R+F++ RR + +G R+L R L+G++S L++L+KR +   +    MR  ++  SLP+ 
Sbjct: 70  ADLRSFLASRRNEGVGARTLGRGLAGVRSLLRHLEKRGLANAAGASAMRAPRQPKSLPKP 129

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ--S 186
           L  + A  +V         E  WI ARN+A+L LLYGCGLRISEAL L   + + D    
Sbjct: 130 LTAEDARRVVAAD--GQMAEEPWIAARNAAVLTLLYGCGLRISEALGL-MGDALSDSTAR 186

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           ++ I GKG+K R+VPLLP V +A+ +Y  LCPFDL+ +   PLFRG +G  L+  + QR 
Sbjct: 187 SITITGKGNKARLVPLLPIVHRAVAQYRTLCPFDLSADK--PLFRGAKGGVLHAAIIQRE 244

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +++LR  LGLP S T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ+YT V+++  
Sbjct: 245 MQKLRAGLGLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTER- 303

Query: 307 GDWMMEIYDQTHPSI 321
              ++E+YD+ HP  
Sbjct: 304 ---LLEVYDKAHPRA 315


>gi|227510303|ref|ZP_03940352.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
 gi|227189955|gb|EEI70022.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
          Length = 295

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 92/307 (29%), Positives = 160/307 (52%), Gaps = 17/307 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           +  ++L  L +ERGLS+ T++SY+ D  + + F         T + I ++    I  ++ 
Sbjct: 4   QLADYLHFLRVERGLSENTIKSYQQDLSEAIHFFQK------TTKDISKVDQFLILNYLE 57

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             + +K    ++ R++S +++F +YL +  +  +  +L + + K+S +LP  L+  +   
Sbjct: 58  NLQQEKKSRNTVIRTVSSLRNFFRYLAQFGVVPDDPMLKVDSPKQSKTLPDVLSVSEV-- 115

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
              N LL   + +K +  R+ A+L  LY  GLR+SE ++L   ++      ++  GKGD+
Sbjct: 116 ---NKLLSMPNVSKPLGVRDRAMLETLYATGLRVSELVNLRLVDLHLPMKLIQTVGKGDR 172

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            RI+P+       I +Y      DL         +F    G+ L      + I++  +  
Sbjct: 173 ERIIPIGDVAIDWITKYLKTTRIDLLRKRTNTDFVFLNAHGRRLTRQAIWQMIKKYVKLA 232

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+    T HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT+++ K+    + E+Y
Sbjct: 233 GIKRHVTPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHISHKH----LTEVY 288

Query: 315 DQTHPSI 321
            + HP  
Sbjct: 289 QKFHPRA 295


>gi|116873397|ref|YP_850178.1| integrase/recombinase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742275|emb|CAK21399.1| integrase/recombinase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 297

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 91/306 (29%), Positives = 156/306 (50%), Gaps = 15/306 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L  L +E+GLS  T+++Y+ D R F+ ++    E    +     L  ++I  F++ 
Sbjct: 5   IEDFLHFLIVEKGLSANTIKAYQRDLRYFVSYM----ETSKNLTDPNILERSDIVGFMAF 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R +    RS+ R ++ ++SF  YL      +   ++ +   K++ SLP+ LN      L
Sbjct: 61  ARQEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQSLPKVLNLDDVEKL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +      +S  +  +  R+ A++ +LY  GLR++E + L   ++      ++  GKGDK 
Sbjct: 121 L-----SSSDISTPLGLRDQAMMEILYATGLRVTELVRLKMDDLHLHMGFIQTIGKGDKE 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           RI+PL  +    + +Y +     L         +F    G+ L    F + ++ + +  G
Sbjct: 176 RIIPLGKTATTVLEQYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESG 235

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT+V        + ++Y 
Sbjct: 236 IEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLR----LKDVYK 291

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 292 QFHPRA 297


>gi|260431124|ref|ZP_05785095.1| site-specific tyrosine recombinase XerC [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260414952|gb|EEX08211.1| site-specific tyrosine recombinase XerC [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 306

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 136/313 (43%), Positives = 195/313 (62%), Gaps = 9/313 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++S       Q WL++L    G S  T  +Y  D   FL F+  +  E+  +  + ++S 
Sbjct: 3   LISPACRDALQLWLESLSALAGRSDNTTNAYRRDVTDFLAFMTLHHNERQGLAALERISV 62

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           T++RA+++++R   +G RSL R LS +KSF ++L +R+    + +L+ R  K +  LPR 
Sbjct: 63  TDMRAWMAQQRDSGVGARSLARKLSAVKSFYRWLAEREGFEPTAVLSTRAPKFTKKLPRP 122

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L E  A  +++ V L +S  + W+ AR+ A++ LLYGCGLRISEALSLT  +     +TL
Sbjct: 123 LAEDAARAMIETVELQSS--SDWVAARDVAVVTLLYGCGLRISEALSLTGADAPL-PATL 179

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKGDK RIVP++P+ R+A+  Y +LCP         PLFRG+RGK LNP   Q  + 
Sbjct: 180 RIVGKGDKERIVPVIPAARQAVDRYLELCPHPQ--GATEPLFRGVRGKALNPKAIQSVMA 237

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           + R  LGLP + T H +RHSFATHLLS GGDLR+IQ +LGH  LSTTQ YT V++     
Sbjct: 238 KARMQLGLPATATPHAMRHSFATHLLSAGGDLRAIQELLGHASLSTTQAYTAVDTAR--- 294

Query: 309 WMMEIYDQTHPSI 321
            +ME+Y++THP  
Sbjct: 295 -LMEVYNRTHPKA 306


>gi|254717978|ref|ZP_05179789.1| site-specific tyrosine recombinase XerC [Brucella sp. 83/13]
 gi|265982921|ref|ZP_06095656.1| tyrosine recombinase xerC [Brucella sp. 83/13]
 gi|306838931|ref|ZP_07471758.1| tyrosine recombinase XerC [Brucella sp. NF 2653]
 gi|306842934|ref|ZP_07475568.1| tyrosine recombinase XerC [Brucella sp. BO2]
 gi|264661513|gb|EEZ31774.1| tyrosine recombinase xerC [Brucella sp. 83/13]
 gi|306286862|gb|EFM58387.1| tyrosine recombinase XerC [Brucella sp. BO2]
 gi|306406001|gb|EFM62253.1| tyrosine recombinase XerC [Brucella sp. NF 2653]
          Length = 315

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 141/314 (44%), Positives = 195/314 (62%), Gaps = 9/314 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
               +L   R+ WL++L+  R LS  TL +YE DTRQFL FL  +  E  +++ I  L  
Sbjct: 10  PARADLAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRI 69

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++R+F++ RR    G R+L R L+G++S L++L+KR +   +    MR  ++  SLP+ 
Sbjct: 70  ADLRSFLANRRNDGAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKP 129

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQST 187
           L    A  +V         E  WI ARN+A+L LLYGCGLRISEAL L+          +
Sbjct: 130 LTADDARRVVSAD--GQMAEEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARS 187

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           + I GKG K R+VPLLP+V KA+ +Y  LCPFDL+     PLFRG +G PL+  + QR +
Sbjct: 188 MTITGKGSKTRLVPLLPAVHKAVAQYRALCPFDLSAGQ--PLFRGAKGGPLHAAIIQREM 245

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++LR  LGLP S T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ+YT V+++   
Sbjct: 246 QKLRAGLGLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQR-- 303

Query: 308 DWMMEIYDQTHPSI 321
             ++E+YD+ HP  
Sbjct: 304 --LLEVYDKAHPRA 315


>gi|228476153|ref|ZP_04060861.1| tyrosine recombinase XerD [Staphylococcus hominis SK119]
 gi|314936376|ref|ZP_07843723.1| tyrosine recombinase XerD [Staphylococcus hominis subsp. hominis
           C80]
 gi|228269976|gb|EEK11456.1| tyrosine recombinase XerD [Staphylococcus hominis SK119]
 gi|313654995|gb|EFS18740.1| tyrosine recombinase XerD [Staphylococcus hominis subsp. hominis
           C80]
          Length = 295

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 155/305 (50%), Gaps = 15/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+ ++IE+GLS  T+ +Y  D  ++  ++  +      I  I  +    I+  +  
Sbjct: 5   IEEFLKFIQIEKGLSDNTIGAYRRDLAKYEEYMKEHK-----IAHIDFIDRQVIQECLGY 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q    +S+ R +S I++F ++  + K   +   + +   K    LP  L  ++ L L
Sbjct: 60  LIDQGASAKSMARFISTIRNFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEVEEVLQL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++     T    K    R+  IL LLY  G+R+SE + +  ++I      +R+ GKG+K 
Sbjct: 120 LE-----TPDLNKKNGYRDRTILELLYATGMRVSELIQINIEDINLIMGFVRVFGKGNKE 174

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RI+PL  +V + +  Y   + P  L   I   LF  + G+PL      + I+Q      +
Sbjct: 175 RIIPLGDTVIEFLDTYLEKVRPQLLKKTITNVLFLNMHGRPLTRQGIWKMIKQYGLKANI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y+Q
Sbjct: 235 NKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRQMYNQ 290

Query: 317 THPSI 321
            HP  
Sbjct: 291 FHPRA 295


>gi|242280181|ref|YP_002992310.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
 gi|242123075|gb|ACS80771.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
          Length = 319

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 109/318 (34%), Positives = 171/318 (53%), Gaps = 20/318 (6%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           NNLPE V        Q ++  L++E+  S  TL+SY  D  QF  FL      K T+   
Sbjct: 9   NNLPEPV--------QVFMTYLDVEKRSSAATLRSYAKDISQFEEFLET---RKKTLAVP 57

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
            +++   +RAF++K   Q++   ++ R LS ++SF KY+ K +      ++ +RN K+  
Sbjct: 58  EKITSDLVRAFLAKLHGQRLAKSTMSRKLSSLRSFFKYMTKHRFIQNDPMVGIRNPKQEI 117

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
             PR+LN  QA+ L+D  +       +  D R+ A+  +LYG GLR+SEA++L   +I  
Sbjct: 118 RHPRSLNVDQAVNLMDAHV-----GDEPADKRDLALAEMLYGSGLRVSEAITLDLFDIDT 172

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
               +R+ GKG+K R+ PL  +  KA+ +Y  +         +  LF G RG  +N    
Sbjct: 173 SSGVVRVSGKGNKERLSPLSDAACKAVNDYLAVRAELGPALEEQALFVGNRGGRINRRQV 232

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            R + ++    GL      H LRHSFA+H+L +G D+RS+Q +LGH  LSTTQ YT++N 
Sbjct: 233 NRILARMAEGAGLHEGVHPHMLRHSFASHMLQSGADMRSVQELLGHEHLSTTQRYTHLNL 292

Query: 304 KNGGDWMMEIYDQTHPSI 321
           +     +M +YD+ HP  
Sbjct: 293 QQ----IMNVYDKAHPLA 306


>gi|163791502|ref|ZP_02185908.1| integrase/recombinase XerD, putative [Carnobacterium sp. AT7]
 gi|159873225|gb|EDP67323.1| integrase/recombinase XerD, putative [Carnobacterium sp. AT7]
          Length = 296

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 96/308 (31%), Positives = 163/308 (52%), Gaps = 16/308 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           ++ + +L+ L IERGLSK T++SY+ D  Q+L F+     E+  +    Q+    + +F+
Sbjct: 3   EDVEEYLRFLTIERGLSKNTIESYKRDISQYLTFI-----EENKLTEWVQIDRYVVLSFL 57

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            K +  +    ++ R +S ++ F ++LK+ +++    +L++   KK+  LP+ L+ K+  
Sbjct: 58  QKLKENQKSAGTIIRMISCLRQFHQFLKQEQLSLTDPMLHIDTPKKAQKLPKVLSIKEVD 117

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L++     T +  + +  R+ A+L +LY  GLR+SE   L   ++      ++  GKGD
Sbjct: 118 RLIE-----TPNTGETLGLRDRAMLEVLYATGLRVSELTELKLNDLHLSLGLIQTIGKGD 172

Query: 196 KIRIVPLLPSVRKAILEY--YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K RI+PL     + I +Y  Y     +   +    LF    G+ L      + ++ L + 
Sbjct: 173 KERILPLGDMAIEWIEKYRRYSRSKLEKEGHRSPYLFLNHHGRKLTRQGVWKNLKILVKK 232

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    T HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT++  +     M  +
Sbjct: 233 AGIEKEVTPHTLRHSFATHLLENGADLRVVQELLGHSDISTTQIYTHITKQR----MSSV 288

Query: 314 YDQTHPSI 321
           Y   HP  
Sbjct: 289 YKTYHPRA 296


>gi|224369851|ref|YP_002604015.1| site-specific recombinase XerD (DNA replication, recombination and
           repair) [Desulfobacterium autotrophicum HRM2]
 gi|223692568|gb|ACN15851.1| site-specific recombinase XerD (DNA replication, recombination and
           repair) [Desulfobacterium autotrophicum HRM2]
          Length = 297

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 100/307 (32%), Positives = 154/307 (50%), Gaps = 21/307 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRA 73
            +LQ L  E+G S  T+++Y  D   FL F       A  T+E++ ++ IR      +R 
Sbjct: 5   QFLQTLSSEKGYSPHTIRAYGGDLTAFLGFCFPGKPVAAITDEQL-LKEIRDSETNPVRG 63

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+     +K+  R++ R LS +KSF  YL        +    +   K   S+P+ L   +
Sbjct: 64  FLMDLAKKKVTRRTISRRLSALKSFFNYLVVVGKIEVNPAQGVSAPKLPRSIPQFLTVDE 123

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
             TL+D++   T      +D RN A+  L Y  G+R+SE  +L   +I  +   +R++GK
Sbjct: 124 LFTLLDSIKTRT-----VVDKRNRAVFELFYSTGMRVSELSNLNVGDIDRESHLVRVRGK 178

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G++ R+VP+     KA+ +Y      +        LF        +    +R +  L + 
Sbjct: 179 GNRERLVPVGDRALKAVDDYRTCIDGEFG-----ALFLNRDAHRFSDSSIRRVLSVLVKA 233

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL +  + HTLRHSFATH+L  G DLR IQ ILGH  LS+TQIYT+V        +ME+
Sbjct: 234 CGLGVPVSPHTLRHSFATHMLDAGADLRGIQEILGHASLSSTQIYTHVTYAR----LMEV 289

Query: 314 YDQTHPS 320
           YD+ HP 
Sbjct: 290 YDRAHPR 296


>gi|315282996|ref|ZP_07871279.1| tyrosine recombinase XerD [Listeria marthii FSL S4-120]
 gi|313613367|gb|EFR87228.1| tyrosine recombinase XerD [Listeria marthii FSL S4-120]
          Length = 297

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 91/306 (29%), Positives = 155/306 (50%), Gaps = 15/306 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L  L +ERGLS  T+++Y+ D   F+ ++    E    +     L  ++I  F++ 
Sbjct: 5   IEDFLHFLIVERGLSANTIKAYQRDLHYFVSYM----ETSKNLTDPNILERSDIVGFMAF 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R +    RS+ R ++ ++SF  YL      +   ++ +   K++ SLP+ LN      L
Sbjct: 61  ARQEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQSLPKVLNLDDVEKL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +      +S  +  +  R+ A++ +LY  GLR++E + L   ++      ++  GKGDK 
Sbjct: 121 L-----SSSDTSTPLGLRDQAMMEILYATGLRVTELVRLKMDDLHLHMGFIQTIGKGDKE 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           RI+PL  +    + +Y +     L         +F    G+ L    F + ++ + +  G
Sbjct: 176 RIIPLGKTATTVLEQYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESG 235

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT+V        + ++Y 
Sbjct: 236 IEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLR----LKDVYK 291

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 292 QFHPRA 297


>gi|259417214|ref|ZP_05741133.1| site-specific tyrosine recombinase XerC [Silicibacter sp.
           TrichCH4B]
 gi|259346120|gb|EEW57934.1| site-specific tyrosine recombinase XerC [Silicibacter sp.
           TrichCH4B]
          Length = 311

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 128/321 (39%), Positives = 186/321 (57%), Gaps = 10/321 (3%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M   + P ++S       Q WL  L    G +  T  +Y  D   FL F++ +      +
Sbjct: 1   MSTGD-PTLISPAARDALQIWLDGLGALEGAADNTRTAYRGDVVDFLAFMSLHFGGPQGL 59

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             + Q++  ++RA+++  R    G RSL R LS +K F  +L KR+    + +L+ R+ K
Sbjct: 60  GALSQITTADMRAWMASSRNAGTGARSLARKLSAVKKFYGWLAKREGFEPTAVLSTRSPK 119

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LPR L++  A  ++D V L +  +  W+ AR+ A++ LLYGCGLRISEAL L  ++
Sbjct: 120 FQKKLPRPLDKDAARAMIDTVELQS--QQDWVAARDVAVVTLLYGCGLRISEALGLLGKD 177

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                +TLRI+GKG K RIVP+LP+ ++A+  Y  LCP        LPLFRG+RG  L+ 
Sbjct: 178 APL-PATLRIKGKGGKERIVPVLPAAQQAVSRYLKLCPHPQEA--SLPLFRGVRGGGLHA 234

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            + Q  +   RR LGLP + T H +RHSFATHLL  GGDLR+IQ +LGH  LSTTQ YT 
Sbjct: 235 RMIQGVVADARRQLGLPATATPHAMRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTA 294

Query: 301 VNSKNGGDWMMEIYDQTHPSI 321
           V++ +    +ME+Y ++HP  
Sbjct: 295 VDTAH----LMEVYARSHPKA 311


>gi|227524454|ref|ZP_03954503.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus
           hilgardii ATCC 8290]
 gi|227088413|gb|EEI23725.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus
           hilgardii ATCC 8290]
          Length = 295

 Score =  276 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 91/307 (29%), Positives = 159/307 (51%), Gaps = 17/307 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           +  ++L  L +ERGLS+ T++ Y+ D  + + F         T + I ++    I  ++ 
Sbjct: 4   QLADYLHFLRVERGLSENTIKGYQQDLSEAIHFFQK------TTKDISKVDQFLILNYLE 57

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             + +K    ++ R++S +++F +YL +  +  +  +L + + K+S +LP  L+  +   
Sbjct: 58  NLQQEKKSRNTVIRTVSSLRNFFRYLAQFGVVPDDPMLKVDSPKQSKTLPDVLSVSEV-- 115

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
              N LL   + +K +  R+ A+L  LY  GLR+SE ++L   ++      ++  GKGD+
Sbjct: 116 ---NKLLSMPNVSKPLGVRDRAMLETLYATGLRVSELVNLRLVDLHLPMKLIQTVGKGDR 172

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            RI+P+       I +Y      DL         +F    G+ L      + I++  +  
Sbjct: 173 ERIIPIGDVAIDWITQYLKTTRIDLLRKRTNTDFVFLNAHGRRLTRQAIWQMIKKYVKLA 232

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+    T HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT+++ K+    + E+Y
Sbjct: 233 GIKRHVTPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHISHKH----LTEVY 288

Query: 315 DQTHPSI 321
            + HP  
Sbjct: 289 QKFHPRA 295


>gi|21232926|ref|NP_638843.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66767001|ref|YP_241763.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188990094|ref|YP_001902104.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv.
           campestris str. B100]
 gi|34222915|sp|Q8P550|XERC_XANCP RecName: Full=Tyrosine recombinase xerC
 gi|81307012|sp|Q4UYY0|XERC_XANC8 RecName: Full=Tyrosine recombinase xerC
 gi|254799362|sp|B0RNK3|XERC_XANCB RecName: Full=Tyrosine recombinase xerC
 gi|21114762|gb|AAM42767.1| site-specific recombinase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66572333|gb|AAY47743.1| site-specific recombinase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167731854|emb|CAP50038.1| site-specific tyrosine recombinase [Xanthomonas campestris pv.
           campestris]
          Length = 322

 Score =  276 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 91/311 (29%), Positives = 154/311 (49%), Gaps = 19/311 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L +L+IER +S  TL +Y  D    + + +    E      + QL   ++R F
Sbjct: 28  LSAVEPFLAHLQIERQVSAHTLDAYRRDLAALIGWASAQGSE-----DVAQLDSAQLRKF 82

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++    + +  +SL+R LS  +S+  +L K      S    +R  K    LP+ L+  +A
Sbjct: 83  VTAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIATSPAAALRAPKAPRKLPQVLDADEA 142

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           + LV+            +  R+ A+L L Y  GLR+SE  +L  +++  D   + + GKG
Sbjct: 143 VRLVEVP------TDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVTVLGKG 196

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K R+VP+      A+  +      D   + Q  +F G  G  ++    Q  I+QL    
Sbjct: 197 GKQRLVPVGSHAVAALRAW----QRDSGGSAQTHVFPGRAGGAISQRAVQIRIKQLAVRQ 252

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+      H LRHSFA+H+L + GDLR +Q +LGH  ++TTQIYT+++ ++    + ++Y
Sbjct: 253 GMFKHVHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQH----LAKVY 308

Query: 315 DQTHPSITQKD 325
           D  HP   +K 
Sbjct: 309 DAAHPRAKRKK 319


>gi|27375557|ref|NP_767086.1| site-specific tyrosine recombinase XerC [Bradyrhizobium japonicum
           USDA 110]
 gi|34222842|sp|Q89X68|XERC_BRAJA RecName: Full=Tyrosine recombinase xerC
 gi|27348694|dbj|BAC45711.1| xerC [Bradyrhizobium japonicum USDA 110]
          Length = 321

 Score =  276 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 133/326 (40%), Positives = 188/326 (57%), Gaps = 12/326 (3%)

Query: 1   MEGNNLPEI----VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE 56
           M     P+I        + +E   WL +L  ER LS  TL++Y  D RQ L FL  +  E
Sbjct: 1   MSKAAAPQIELASADPSIAQEMTRWLSHLGAERRLSPKTLEAYGRDLRQCLDFLCNHWGE 60

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           ++T++    L  T++RAF++ RR   I  RSL R+L+G++SF ++L++        +  +
Sbjct: 61  RVTLKRFAALEATDVRAFMAMRRADDIAGRSLMRALAGLRSFGRFLEREGKGKVGALSAI 120

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           R  K + SLP+ L    A  L D           WI AR++A++ LLYG GLRISEAL L
Sbjct: 121 RAPKVAKSLPKPLPMASAKRLADADERAGEERETWILARDAAVMALLYGSGLRISEALGL 180

Query: 177 TPQN--IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
             +      +   L + GKG+K R+VP+L +V   + EY  +CP+ L    + P+F G R
Sbjct: 181 KRREVPKPGEGDVLVVTGKGNKTRMVPVLQNVLALVQEYVSMCPYPL--PAEGPIFVGAR 238

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G PL+P + Q  + +LR  LGLP S T H LRHSFATHLLS GGDLR+IQ +LGH  LST
Sbjct: 239 GGPLSPRIIQLAMERLRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHSSLST 298

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPS 320
           TQIYT ++S+     ++E+Y   HP 
Sbjct: 299 TQIYTGIDSER----LLEVYASAHPR 320


>gi|170017033|ref|YP_001727952.1| site-specific recombinase XerD [Leuconostoc citreum KM20]
 gi|169803890|gb|ACA82508.1| Site-specific recombinase XerD [Leuconostoc citreum KM20]
          Length = 298

 Score =  276 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 88/313 (28%), Positives = 161/313 (51%), Gaps = 16/313 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++ ++     +++  + IERGLS+ T+ SY  D  QF ++L+           + ++ + 
Sbjct: 1   MTQQIEDAISDYIHYIRIERGLSENTITSYRQDLNQFGMYLSQEH------LLLGEVDHI 54

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            + +++++ RT    + S+ R ++ ++ F  YL +  + T + + +++  KK+  LP  L
Sbjct: 55  VVLSWLNRLRTNGKSNSSVIRMVTSLRRFFGYLTQENMITHNPMSHVKPPKKAAHLPAVL 114

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           + ++  TL+          +  +  RN  +L ++Y  GLR+SE ++L   ++      ++
Sbjct: 115 SFEEIDTLL-----GVPVPSTPLGMRNRTLLEVMYATGLRVSELVNLKMSDLHIQLGLIQ 169

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
             GKGDK RI+P+       +  Y+       L       +F   RG  L      + I+
Sbjct: 170 TLGKGDKERIIPIGEVAVDWLERYFAGARLTLLKAQESPYVFVNDRGGQLTRQGVWKIIK 229

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L    G+    + HTLRHSFATH+L NG DLR +Q +LGH  +STTQIYT+++ K    
Sbjct: 230 KLVLEAGITKDVSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKR--- 286

Query: 309 WMMEIYDQTHPSI 321
            + E+YD+ HP  
Sbjct: 287 -LSEVYDEYHPRA 298


>gi|288555956|ref|YP_003427891.1| integrase/recombinase [Bacillus pseudofirmus OF4]
 gi|288547116|gb|ADC50999.1| integrase/recombinase [Bacillus pseudofirmus OF4]
          Length = 295

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 97/309 (31%), Positives = 161/309 (52%), Gaps = 15/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + K+   +L  ++IERGL++ T+QSY  D   +  FL    +  I IQT + ++   I  
Sbjct: 1   MQKDVSEFLHYIQIERGLAENTIQSYRRDLLNYAKFL----QNVIDIQTFKDVTRHMIVD 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++   + Q   + ++ R+++ I++F ++L + K++ +   +++   K S  LP+ L+ ++
Sbjct: 57  YLFFLKEQGRAEATIARTIASIRAFHQFLLREKLSEQDPSVHLDIPKASKRLPKVLSLEE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+      T      +  RN A++  LY  G+R+SE ++L   +       +R  GK
Sbjct: 117 VEALL------TISGQDHLSIRNRAMMETLYATGMRVSELINLKLTDTHLSMGFVRCIGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G+K RI+PL     KA+  Y        L  N    +F    G+PL    F + +++L  
Sbjct: 171 GNKERIIPLGQQATKALQLYLEQARSTMLKKNRHEYVFVNHYGRPLTRQGFWKIVKKLAE 230

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        M +
Sbjct: 231 AAKIEKELTPHTLRHSFATHLLENGADLRAVQEMLGHVDISTTQIYTHVTKTR----MKD 286

Query: 313 IYDQTHPSI 321
           +Y Q HP  
Sbjct: 287 VYAQYHPRA 295


>gi|85713711|ref|ZP_01044701.1| phage integrase [Nitrobacter sp. Nb-311A]
 gi|85699615|gb|EAQ37482.1| phage integrase [Nitrobacter sp. Nb-311A]
          Length = 322

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 129/317 (40%), Positives = 186/317 (58%), Gaps = 8/317 (2%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P   + ++ ++   WL +L  ER LS  TL++Y  D RQ L+FL  +  E +T++    L
Sbjct: 12  PACAASDVGQQIARWLTHLRAERRLSAKTLEAYARDVRQCLMFLGQHWGELVTLERFAAL 71

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
              +IRAF++ RR + IG RSL RSL+G++SF ++L++  +     +  +R  K   SLP
Sbjct: 72  EPGDIRAFMAARRAEDIGGRSLMRSLAGLRSFARFLEREGLGKVGALGAIRAPKVGKSLP 131

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--D 184
           + +    A    D           WI AR++A++ LLYG GLRISEAL L  +++     
Sbjct: 132 KPIQMSAAKRFADASERAGEDREPWIWARDAAVMALLYGSGLRISEALGLKRRDVPLPGA 191

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
              L + GKG+K R+VP+L +V   I EY  +CP  L+ +   P+F G RG PL   + Q
Sbjct: 192 GDVLVVTGKGNKTRMVPVLHNVLALIHEYVAMCPHSLSPD--GPIFVGARGGPLRARIIQ 249

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             + ++R  LGLP S T H LRHSFATHLLS GGDLR+IQ +LGH  LSTTQIYT ++S+
Sbjct: 250 LVMARMRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDSE 309

Query: 305 NGGDWMMEIYDQTHPSI 321
                ++E+Y   HP  
Sbjct: 310 R----LLEVYRTAHPRA 322


>gi|23502766|ref|NP_698893.1| site-specific tyrosine recombinase XerC [Brucella suis 1330]
 gi|62290770|ref|YP_222563.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 1
           str. 9-941]
 gi|82700682|ref|YP_415256.1| site-specific tyrosine recombinase XerC [Brucella melitensis biovar
           Abortus 2308]
 gi|161619834|ref|YP_001593721.1| site-specific tyrosine recombinase XerC [Brucella canis ATCC 23365]
 gi|189024985|ref|YP_001935753.1| site-specific tyrosine recombinase XerC [Brucella abortus S19]
 gi|225853354|ref|YP_002733587.1| site-specific tyrosine recombinase XerC [Brucella melitensis ATCC
           23457]
 gi|254690060|ref|ZP_05153314.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 6
           str. 870]
 gi|254694548|ref|ZP_05156376.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 3
           str. Tulya]
 gi|254696173|ref|ZP_05158001.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254700560|ref|ZP_05162388.1| site-specific tyrosine recombinase XerC [Brucella suis bv. 5 str.
           513]
 gi|254704930|ref|ZP_05166758.1| site-specific tyrosine recombinase XerC [Brucella suis bv. 3 str.
           686]
 gi|254707556|ref|ZP_05169384.1| site-specific tyrosine recombinase XerC [Brucella pinnipedialis
           M163/99/10]
 gi|254708907|ref|ZP_05170718.1| site-specific tyrosine recombinase XerC [Brucella pinnipedialis
           B2/94]
 gi|254715980|ref|ZP_05177791.1| site-specific tyrosine recombinase XerC [Brucella ceti M13/05/1]
 gi|254731091|ref|ZP_05189669.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 4
           str. 292]
 gi|256030433|ref|ZP_05444047.1| site-specific tyrosine recombinase XerC [Brucella pinnipedialis
           M292/94/1]
 gi|256112250|ref|ZP_05453171.1| site-specific tyrosine recombinase XerC [Brucella melitensis bv. 3
           str. Ether]
 gi|256158417|ref|ZP_05456315.1| site-specific tyrosine recombinase XerC [Brucella ceti M490/95/1]
 gi|256253837|ref|ZP_05459373.1| site-specific tyrosine recombinase XerC [Brucella ceti B1/94]
 gi|256258313|ref|ZP_05463849.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 9
           str. C68]
 gi|256263161|ref|ZP_05465693.1| tyrosine recombinase xerC [Brucella melitensis bv. 2 str. 63/9]
 gi|256370318|ref|YP_003107829.1| tyrosine recombinase [Brucella microti CCM 4915]
 gi|260169343|ref|ZP_05756154.1| site-specific tyrosine recombinase XerC [Brucella sp. F5/99]
 gi|260546037|ref|ZP_05821777.1| tyrosine recombinase xerC [Brucella abortus NCTC 8038]
 gi|260567595|ref|ZP_05838065.1| tyrosine recombinase xerC [Brucella suis bv. 4 str. 40]
 gi|260755595|ref|ZP_05867943.1| tyrosine recombinase xerC [Brucella abortus bv. 6 str. 870]
 gi|260758821|ref|ZP_05871169.1| tyrosine recombinase xerC [Brucella abortus bv. 4 str. 292]
 gi|260760545|ref|ZP_05872888.1| tyrosine recombinase xerC [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884621|ref|ZP_05896235.1| tyrosine recombinase xerC [Brucella abortus bv. 9 str. C68]
 gi|261214868|ref|ZP_05929149.1| tyrosine recombinase xerC [Brucella abortus bv. 3 str. Tulya]
 gi|261217745|ref|ZP_05932026.1| tyrosine recombinase xerC [Brucella ceti M13/05/1]
 gi|261220972|ref|ZP_05935253.1| tyrosine recombinase xerC [Brucella ceti B1/94]
 gi|261315040|ref|ZP_05954237.1| tyrosine recombinase xerC [Brucella pinnipedialis M163/99/10]
 gi|261316403|ref|ZP_05955600.1| tyrosine recombinase xerC [Brucella pinnipedialis B2/94]
 gi|261751064|ref|ZP_05994773.1| tyrosine recombinase xerC [Brucella suis bv. 5 str. 513]
 gi|261755626|ref|ZP_05999335.1| tyrosine recombinase xerC [Brucella suis bv. 3 str. 686]
 gi|261758859|ref|ZP_06002568.1| tyrosine recombinase xerC [Brucella sp. F5/99]
 gi|265987475|ref|ZP_06100032.1| tyrosine recombinase xerC [Brucella pinnipedialis M292/94/1]
 gi|265993679|ref|ZP_06106236.1| tyrosine recombinase xerC [Brucella melitensis bv. 3 str. Ether]
 gi|265996931|ref|ZP_06109488.1| tyrosine recombinase xerC [Brucella ceti M490/95/1]
 gi|294851157|ref|ZP_06791830.1| tyrosine recombinase XerC [Brucella sp. NVSL 07-0026]
 gi|297247158|ref|ZP_06930876.1| tyrosine recombinase XerC [Brucella abortus bv. 5 str. B3196]
 gi|306843367|ref|ZP_07475968.1| tyrosine recombinase XerC [Brucella sp. BO1]
 gi|34222806|sp|Q7ZAN7|XERC_BRUSU RecName: Full=Tyrosine recombinase xerC
 gi|23348785|gb|AAN30808.1| integrase/recombinase XerC [Brucella suis 1330]
 gi|62196902|gb|AAX75202.1| XerC, integrase/recombinase [Brucella abortus bv. 1 str. 9-941]
 gi|82616783|emb|CAJ11872.1| Phage integrase:Phage integrase, N-terminal SAM-like [Brucella
           melitensis biovar Abortus 2308]
 gi|161336645|gb|ABX62950.1| tyrosine recombinase XerC [Brucella canis ATCC 23365]
 gi|189020557|gb|ACD73279.1| Phage integrase [Brucella abortus S19]
 gi|225641719|gb|ACO01633.1| tyrosine recombinase XerC [Brucella melitensis ATCC 23457]
 gi|256000481|gb|ACU48880.1| tyrosine recombinase [Brucella microti CCM 4915]
 gi|260096144|gb|EEW80020.1| tyrosine recombinase xerC [Brucella abortus NCTC 8038]
 gi|260157113|gb|EEW92193.1| tyrosine recombinase xerC [Brucella suis bv. 4 str. 40]
 gi|260669139|gb|EEX56079.1| tyrosine recombinase xerC [Brucella abortus bv. 4 str. 292]
 gi|260670977|gb|EEX57798.1| tyrosine recombinase xerC [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675703|gb|EEX62524.1| tyrosine recombinase xerC [Brucella abortus bv. 6 str. 870]
 gi|260874149|gb|EEX81218.1| tyrosine recombinase xerC [Brucella abortus bv. 9 str. C68]
 gi|260916475|gb|EEX83336.1| tyrosine recombinase xerC [Brucella abortus bv. 3 str. Tulya]
 gi|260919556|gb|EEX86209.1| tyrosine recombinase xerC [Brucella ceti B1/94]
 gi|260922834|gb|EEX89402.1| tyrosine recombinase xerC [Brucella ceti M13/05/1]
 gi|261295626|gb|EEX99122.1| tyrosine recombinase xerC [Brucella pinnipedialis B2/94]
 gi|261304066|gb|EEY07563.1| tyrosine recombinase xerC [Brucella pinnipedialis M163/99/10]
 gi|261738843|gb|EEY26839.1| tyrosine recombinase xerC [Brucella sp. F5/99]
 gi|261740817|gb|EEY28743.1| tyrosine recombinase xerC [Brucella suis bv. 5 str. 513]
 gi|261745379|gb|EEY33305.1| tyrosine recombinase xerC [Brucella suis bv. 3 str. 686]
 gi|262551399|gb|EEZ07389.1| tyrosine recombinase xerC [Brucella ceti M490/95/1]
 gi|262764660|gb|EEZ10581.1| tyrosine recombinase xerC [Brucella melitensis bv. 3 str. Ether]
 gi|263093066|gb|EEZ17216.1| tyrosine recombinase xerC [Brucella melitensis bv. 2 str. 63/9]
 gi|264659672|gb|EEZ29933.1| tyrosine recombinase xerC [Brucella pinnipedialis M292/94/1]
 gi|294819746|gb|EFG36745.1| tyrosine recombinase XerC [Brucella sp. NVSL 07-0026]
 gi|297174327|gb|EFH33674.1| tyrosine recombinase XerC [Brucella abortus bv. 5 str. B3196]
 gi|306276058|gb|EFM57758.1| tyrosine recombinase XerC [Brucella sp. BO1]
 gi|326409918|gb|ADZ66983.1| Phage integrase [Brucella melitensis M28]
 gi|326539631|gb|ADZ87846.1| tyrosine recombinase XerC [Brucella melitensis M5-90]
          Length = 315

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 142/314 (45%), Positives = 196/314 (62%), Gaps = 9/314 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
               +L   R+ WL++L+  R LS  TL +YE DTRQFL FL  +  E  +++ I  L  
Sbjct: 10  PARADLAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRI 69

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++R+F++ RR    G R+L R L+G++S L++L+KR +   +    MR  ++  SLP+ 
Sbjct: 70  ADLRSFLANRRNDGAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKP 129

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQST 187
           L    A  +V         E  WI ARN+A+L LLYGCGLRISEAL L+          +
Sbjct: 130 LTADDARRVVSAD--GQMAEEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARS 187

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           + I GKG K R+VPLLP+V KA+ +Y  LCPFDL+     PLFRG +G PL+  + QR +
Sbjct: 188 MTITGKGSKTRLVPLLPAVHKAVAQYRALCPFDLSAGQ--PLFRGAKGGPLHAAIIQREM 245

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++LR  LGLP S T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ+YT V+++   
Sbjct: 246 QKLRAGLGLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQR-- 303

Query: 308 DWMMEIYDQTHPSI 321
             ++E+YD+THP  
Sbjct: 304 --LLEVYDKTHPRA 315


>gi|206889353|ref|YP_002249196.1| tyrosine recombinase XerC [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|254799359|sp|B5YFZ8|XERC_THEYD RecName: Full=Tyrosine recombinase xerC
 gi|206741291|gb|ACI20348.1| tyrosine recombinase XerC [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 301

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 94/310 (30%), Positives = 163/310 (52%), Gaps = 22/310 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N+L ++++++G S  TL++Y+ D  +F  F     E+         +    IR FIS++ 
Sbjct: 10  NFLNHIKLQKGDSSHTLRAYKNDLEEFFNFAKVEPEK---------VEPIVIRGFISEQI 60

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +     ++ R LS ++SF  YL        +    + ++K   +LP+ L    A  LV+
Sbjct: 61  LKGKSKTTVARKLSTLRSFFSYLYSEGFIKINPARVVSSVKIKRALPKFLTVDDAFKLVE 120

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                   E K+   R+ AIL L Y  G+R+SE   L  +++   +  ++++GKG K RI
Sbjct: 121 -----APSEDKFTVQRDKAILELFYSSGIRVSELCGLNLEDLDLKEGLIKVRGKGKKERI 175

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLN----IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           VP+    ++A+ +Y  +             + PLF   RG+ ++    +R + +  +++G
Sbjct: 176 VPVGQKAKEALKKYLAIRQILRIKKKLSLDETPLFINNRGQRISDRQVRRIVEKYAKFIG 235

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +      HTLRH+FA+HLL  G DLR IQ +LGH  LSTTQIYT+V+ K+    ++E+YD
Sbjct: 236 VLEKIGPHTLRHTFASHLLMEGADLRVIQELLGHASLSTTQIYTHVDLKH----LIEVYD 291

Query: 316 QTHPSITQKD 325
           ++HP   + +
Sbjct: 292 KSHPLSKEDE 301


>gi|70726420|ref|YP_253334.1| site-specific recombinase [Staphylococcus haemolyticus JCSC1435]
 gi|82582338|sp|Q4L6J7|XERD_STAHJ RecName: Full=Tyrosine recombinase xerD
 gi|68447144|dbj|BAE04728.1| site-specific recombinase [Staphylococcus haemolyticus JCSC1435]
          Length = 295

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 160/305 (52%), Gaps = 15/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+ ++IE+GLS+ T+ +Y  D +++ +++     ++  I  I  +    I+  +  
Sbjct: 5   IEEYLKFIQIEKGLSENTIGAYRRDLKKYQLYM-----QEQKIAHIDFIDRQTIQECLGS 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q    +S+ R +S I+SF ++  + K   +   + +   K    LP  L+ ++ + L
Sbjct: 60  LIDQGASAKSIARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLDVEEVIQL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++     T   TK    R+  IL LLY  G+R++E + +   ++      +++ GKG+K 
Sbjct: 120 LE-----TPDLTKNNGYRDRTILELLYATGMRVTELIQIEIDDVNLIMGFVKVFGKGNKE 174

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RI+PL  +V + +  Y + +    L   +   LF  + G+PL      + I+Q      +
Sbjct: 175 RIIPLGDTVIEYLDTYINNVRSQLLKKTVTNVLFLNLHGRPLTRQGIWKLIKQYGLRANI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y+Q
Sbjct: 235 NKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVS----KTQIRQMYNQ 290

Query: 317 THPSI 321
            HP  
Sbjct: 291 FHPRA 295


>gi|73748515|ref|YP_307754.1| tyrosine recombinase XerC [Dehalococcoides sp. CBDB1]
 gi|147669296|ref|YP_001214114.1| tyrosine recombinase XerC subunit [Dehalococcoides sp. BAV1]
 gi|289432563|ref|YP_003462436.1| tyrosine recombinase XerC [Dehalococcoides sp. GT]
 gi|73660231|emb|CAI82838.1| tyrosine recombinase XerC [Dehalococcoides sp. CBDB1]
 gi|146270244|gb|ABQ17236.1| tyrosine recombinase XerC subunit [Dehalococcoides sp. BAV1]
 gi|288946283|gb|ADC73980.1| tyrosine recombinase XerC [Dehalococcoides sp. GT]
          Length = 307

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 91/313 (29%), Positives = 148/313 (47%), Gaps = 15/313 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +    +L+ L +E+ +S  TL++Y  D   F+ +L         + +  ++    +R 
Sbjct: 1   MQENFNKYLEYLSVEKNVSPYTLRNYRTDLIGFVNYLIEKK-----VSSFDRVDRYILRD 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++S    + I   S+ R LS ++SF +YL +  +  ++  LN  + +    LP  L   +
Sbjct: 56  YMSSLIAKGIVKGSIARKLSAVRSFYRYLMREGLIQKNPTLNASSPRLDKRLPEFLTVTE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                 N LL     +     R+ A + LLY  GLR+SE + L  +N+      +R+ GK
Sbjct: 116 V-----NKLLRVPDSSTPQGLRDKAFMELLYASGLRVSELVKLDIENMDLHSHQIRVWGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRR 252
           G K R+V       ++I  Y +L    L      P LF    G  L+   FQ  + +L +
Sbjct: 171 GSKERVVLAGLPAIQSIQNYLNLGRPLLKGKRNTPALFLNPTGGRLSARSFQERLDKLAK 230

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+      H LRH+FATHLL  G DLR +Q +LGH  LSTTQIYT+V          +
Sbjct: 231 QAGIEKHVHPHMLRHTFATHLLDGGADLRVVQELLGHSNLSTTQIYTHVTKSQA----RK 286

Query: 313 IYDQTHPSITQKD 325
           +Y  +HP    ++
Sbjct: 287 VYMSSHPLARPQN 299


>gi|262089688|gb|ACY24783.1| XerD tyrosine recombinase [uncultured organism]
          Length = 323

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 98/316 (31%), Positives = 158/316 (50%), Gaps = 19/316 (6%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +P +   +L+ E   +L  + +E+GLS  T +SY  D  QF ++L     + I       
Sbjct: 25  VPTVADSQLIAE---YLDAIWMEKGLSHNTQESYRRDLSQFAMWLNQQGRQLIG------ 75

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +    ++ ++  R  QK+  R+  R LS ++   +YL +    +ES +  + N K S SL
Sbjct: 76  VDPALVQDYLDIRLQQKLSSRTSARFLSCVRGLYRYLLRESRISESPVALIDNPKLSRSL 135

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P++L+E     L+          +  +  R+  +L +LY CGLR++E + LT   I   Q
Sbjct: 136 PKSLSETDVEALL-----AAPDLSDPVGLRDRTMLEVLYACGLRVTELVELTMPQINLRQ 190

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           + +R+ GKG K R++P+       ++ Y     P  LN      +F   R +P+    F 
Sbjct: 191 NVVRVMGKGSKERLIPMGEEAAAWLVRYLREARPVLLNNMPDEVVFPSTRAQPMTRQTFW 250

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             I+      G+    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V   
Sbjct: 251 YRIKHWAMVAGIKKDLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKL 310

Query: 305 NGGDWMMEIYDQTHPS 320
                M + + Q HP 
Sbjct: 311 R----MKQQHAQHHPR 322


>gi|225628115|ref|ZP_03786150.1| tyrosine recombinase XerC [Brucella ceti str. Cudo]
 gi|237816277|ref|ZP_04595270.1| tyrosine recombinase XerC [Brucella abortus str. 2308 A]
 gi|225616940|gb|EEH13987.1| tyrosine recombinase XerC [Brucella ceti str. Cudo]
 gi|237788344|gb|EEP62559.1| tyrosine recombinase XerC [Brucella abortus str. 2308 A]
          Length = 317

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 142/314 (45%), Positives = 196/314 (62%), Gaps = 9/314 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
               +L   R+ WL++L+  R LS  TL +YE DTRQFL FL  +  E  +++ I  L  
Sbjct: 12  PARADLAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRI 71

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++R+F++ RR    G R+L R L+G++S L++L+KR +   +    MR  ++  SLP+ 
Sbjct: 72  ADLRSFLANRRNDGAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKP 131

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQST 187
           L    A  +V         E  WI ARN+A+L LLYGCGLRISEAL L+          +
Sbjct: 132 LTADDARRVVSAD--GQMAEEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARS 189

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           + I GKG K R+VPLLP+V KA+ +Y  LCPFDL+     PLFRG +G PL+  + QR +
Sbjct: 190 MTITGKGSKTRLVPLLPAVHKAVAQYRALCPFDLSAGQ--PLFRGAKGGPLHAAIIQREM 247

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++LR  LGLP S T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ+YT V+++   
Sbjct: 248 QKLRAGLGLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQR-- 305

Query: 308 DWMMEIYDQTHPSI 321
             ++E+YD+THP  
Sbjct: 306 --LLEVYDKTHPRA 317


>gi|221135227|ref|ZP_03561530.1| site-specific tyrosine recombinase XerD [Glaciecola sp. HTCC2999]
          Length = 303

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 100/312 (32%), Positives = 163/312 (52%), Gaps = 13/312 (4%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++S    +    +L+ L +E+GLS  TL +Y+ D RQ   FL           ++  ++ 
Sbjct: 4   LLSAHNAQVLDAFLEVLYLEKGLSDNTLSAYQTDLRQLCRFLTQQD----AAFSLVDITD 59

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           T+IRA++S R+   +  RS  R+LS +K+F+KY    KI  +  + +++  K + SLP +
Sbjct: 60  TDIRAYLSHRQANNVSARSTARALSSLKTFIKYCLSEKIRDDDPLRHIKPPKVAVSLPDS 119

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L E Q  +L+             +  R+ A+L +LY  GLR++E + L    +   Q  +
Sbjct: 120 LTEAQVESLL-----AAPDTALAVGQRDKAMLEVLYATGLRVTELVGLRLDQMSLLQGVV 174

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R+ GKG+K R+VPL     +A+  +      +L  +    +F   RG  +    F   I+
Sbjct: 175 RVIGKGNKERLVPLGEPAIEALTLFLQQGRHELLKHSSDVVFPSTRGTQMTRQTFWHRIK 234

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                 G+ +  + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V S+    
Sbjct: 235 HYAMVAGIQVHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVASER--- 291

Query: 309 WMMEIYDQTHPS 320
            +  I +  HP 
Sbjct: 292 -LTHIIESHHPR 302


>gi|300214635|gb|ADJ79051.1| Integrase/recombinase, XerD/RipX family [Lactobacillus salivarius
           CECT 5713]
          Length = 297

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 98/303 (32%), Positives = 162/303 (53%), Gaps = 15/303 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L++ERGLS+ T+ SY  D + FL +L      +  I + +Q++   I  ++   +
Sbjct: 9   DYLHYLKVERGLSENTINSYGIDLKLFLEYL-----RENEIPSFKQVNKEVIVNYMQSEK 63

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                + S+ RS+S ++ F +YL + KI  +  +L +   KK   LP+ L +++   L+ 
Sbjct: 64  NNNKANSSILRSVSSLRKFFQYLAQEKIIEKDPMLLIDTPKKKQHLPQVLTKEEVEKLL- 122

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                + +  + +  R+ A+L L+Y  GLRISE ++L  +++     TL+  GKG K RI
Sbjct: 123 ----RSPNTGQVLGLRDRAMLELMYATGLRISEIINLKLEDLHLTMGTLQTLGKGHKERI 178

Query: 200 VPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+     K +  Y +   P  L       LF    G  L      + ++   R  G+  
Sbjct: 179 VPVGDEAIKWVNRYLEEARPKLLKQKRSNYLFLNFHGNNLTRQGVWKNLKAEVRKAGIQK 238

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + T HTLRHSFATH+L NG DLR +Q +LGH  +STTQIYT++++K     + +IY++ H
Sbjct: 239 NITPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHLSNKQ----LADIYNRAH 294

Query: 319 PSI 321
           P  
Sbjct: 295 PRA 297


>gi|218194771|gb|EEC77198.1| hypothetical protein OsI_15703 [Oryza sativa Indica Group]
          Length = 752

 Score =  275 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 79/305 (25%), Positives = 146/305 (47%), Gaps = 13/305 (4%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
               ++  L +E GLS+ TL +Y  D   +  +L  +  +  T   +   +   ++A+ +
Sbjct: 459 AIDAFIDALWLEDGLSRNTLAAYRRDLVLYAQWLGQHASD--TAGALDATAEHHLKAYFA 516

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            R  +     S  R L+ ++ + ++  + +       + ++  ++   +P+ L+  Q   
Sbjct: 517 ARHAETRA-TSANRRLTVLRRYFQWALRERRIAADPTVRLQAARQPLRVPKTLSAAQVEA 575

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L     L     +  +  R+ A+L L+Y  GLR++E ++L   +    +  LR+ GKG K
Sbjct: 576 L-----LQAPDTSTSLGLRDRAMLELMYASGLRVTELVTLKTYHAGLSEGVLRVMGKGGK 630

Query: 197 IRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R+VP      + +  Y D    D L       LF   RG  +   +F   +++  +  G
Sbjct: 631 ERLVPFGEVAAQWMQRYLDEARADILAGQQTDDLFVTRRGAGMTRAMFWVVVKKHAQAAG 690

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           + +  + HTLRH+FATHLL++G DLR +Q +LGH  +STT IYT+V  +     +  ++ 
Sbjct: 691 ITVPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARER----LKALHA 746

Query: 316 QTHPS 320
           Q HP 
Sbjct: 747 QHHPR 751


>gi|256059893|ref|ZP_05450079.1| site-specific tyrosine recombinase XerC [Brucella neotomae 5K33]
          Length = 309

 Score =  275 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 142/314 (45%), Positives = 196/314 (62%), Gaps = 9/314 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
               +L   R+ WL++L+  R LS  TL +YE DTRQFL FL  +  E  +++ I  L  
Sbjct: 4   PARADLAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRI 63

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++R+F++ RR    G R+L R L+G++S L++L+KR +   +    MR  ++  SLP+ 
Sbjct: 64  ADLRSFLANRRNDGAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKP 123

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQST 187
           L    A  +V         E  WI ARN+A+L LLYGCGLRISEAL L+          +
Sbjct: 124 LTADDARRVVSAD--GQMAEEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARS 181

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           + I GKG K R+VPLLP+V KA+ +Y  LCPFDL+     PLFRG +G PL+  + QR +
Sbjct: 182 MTITGKGSKTRLVPLLPAVHKAVAQYRALCPFDLSAGQ--PLFRGAKGGPLHAAIIQREM 239

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++LR  LGLP S T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ+YT V+++   
Sbjct: 240 QKLRAGLGLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQR-- 297

Query: 308 DWMMEIYDQTHPSI 321
             ++E+YD+THP  
Sbjct: 298 --LLEVYDKTHPRA 309


>gi|134298963|ref|YP_001112459.1| tyrosine recombinase XerD [Desulfotomaculum reducens MI-1]
 gi|134051663|gb|ABO49634.1| tyrosine recombinase XerD subunit [Desulfotomaculum reducens MI-1]
          Length = 296

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 93/310 (30%), Positives = 152/310 (49%), Gaps = 16/310 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +    ++  L +ERGL++ TL SY  D  Q+L  L     +K  + ++ Q     I +
Sbjct: 1   MERWLDEFIHYLAVERGLAQNTLASYRIDLSQYLDHL-----KKQGVSSLTQADRNHILS 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            + K +       ++ R L+ +K F ++L      +E   +++ + K    LP  L+ ++
Sbjct: 56  HLYKLQKDGKAPATISRHLAALKHFYRFLVSDGAVSEDYTVSLESPKLKQRLPHVLSTEE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+    L           R+ A+L L+Y  G+R+SE +SL   ++  D   ++  GK
Sbjct: 116 VENLLCQPQLSDPA-----GLRDKAMLELIYATGIRVSEMVSLNLPDVELDMGYIKCFGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G K RI+PL     + I EY +     L         LF  ++GK L    F + I++  
Sbjct: 171 GAKERIIPLGSVAIRYIREYLERSRVKLTKGKTEHQALFVNVQGKRLTRQGFWKIIKKYA 230

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +   +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT++        + 
Sbjct: 231 KEGRINKPITPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHLTKLR----LR 286

Query: 312 EIYDQTHPSI 321
           E+Y + HP  
Sbjct: 287 EVYTKAHPRA 296


>gi|25028109|ref|NP_738163.1| site-specific tyrosine recombinase XerD [Corynebacterium efficiens
           YS-314]
 gi|259507166|ref|ZP_05750066.1| tyrosine recombinase XerD [Corynebacterium efficiens YS-314]
 gi|34222804|sp|Q7ZAN4|XERD_COREF RecName: Full=Tyrosine recombinase xerD
 gi|23493393|dbj|BAC18363.1| putative integrase/recombinase [Corynebacterium efficiens YS-314]
 gi|259165247|gb|EEW49801.1| tyrosine recombinase XerD [Corynebacterium efficiens YS-314]
          Length = 304

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 148/308 (48%), Gaps = 16/308 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + WL +L +ERGLS  TL SY  D  ++  +L     E   I  I +++   + A++   
Sbjct: 8   RTWLTHLAVERGLSSNTLSSYRRDIERYCDWL-----EAARIGDISEIATATVEAYVMDL 62

Query: 79  RTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           R        +   S  R+L  ++   K+     +       ++        LP  L+  +
Sbjct: 63  RRGVDGRAPLSASSAGRALIVVRGLHKFALAEGLVGVDVAADVSPPSTGRHLPDTLSVPE 122

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
             TL+D   + TS     +D R+ A+L +LYG G RISEA+ L   ++      LRI GK
Sbjct: 123 VETLIDA--IPTSDIATPVDIRDRALLEVLYGTGARISEAVGLMVDDVTHTPEVLRITGK 180

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R+VP     R A+ +Y       L+      LF   RG PL+       +++    
Sbjct: 181 GSKQRMVPYGSMARAAVDDYLVRARPALSKGRTPVLFLNQRGGPLSRQSAWAALKKAAGR 240

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT+V ++N    + ++
Sbjct: 241 AGIAKDISPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTHVTAEN----LRQV 296

Query: 314 YDQTHPSI 321
           +   HP  
Sbjct: 297 WRSAHPRA 304


>gi|254713666|ref|ZP_05175477.1| site-specific tyrosine recombinase XerC [Brucella ceti M644/93/1]
 gi|261321407|ref|ZP_05960604.1| tyrosine recombinase xerC [Brucella ceti M644/93/1]
 gi|261323863|ref|ZP_05963060.1| tyrosine recombinase xerC [Brucella neotomae 5K33]
 gi|261294097|gb|EEX97593.1| tyrosine recombinase xerC [Brucella ceti M644/93/1]
 gi|261299843|gb|EEY03340.1| tyrosine recombinase xerC [Brucella neotomae 5K33]
          Length = 308

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 142/314 (45%), Positives = 196/314 (62%), Gaps = 9/314 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
               +L   R+ WL++L+  R LS  TL +YE DTRQFL FL  +  E  +++ I  L  
Sbjct: 3   PARADLAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRI 62

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++R+F++ RR    G R+L R L+G++S L++L+KR +   +    MR  ++  SLP+ 
Sbjct: 63  ADLRSFLANRRNDGAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKP 122

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQST 187
           L    A  +V         E  WI ARN+A+L LLYGCGLRISEAL L+          +
Sbjct: 123 LTADDARRVVSAD--GQMAEEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARS 180

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           + I GKG K R+VPLLP+V KA+ +Y  LCPFDL+     PLFRG +G PL+  + QR +
Sbjct: 181 MTITGKGSKTRLVPLLPAVHKAVAQYRALCPFDLSAGQ--PLFRGAKGGPLHAAIIQREM 238

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++LR  LGLP S T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ+YT V+++   
Sbjct: 239 QKLRAGLGLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQR-- 296

Query: 308 DWMMEIYDQTHPSI 321
             ++E+YD+THP  
Sbjct: 297 --LLEVYDKTHPRA 308


>gi|301299326|ref|ZP_07205611.1| tyrosine recombinase XerD [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300853066|gb|EFK80665.1| tyrosine recombinase XerD [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 290

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 98/303 (32%), Positives = 162/303 (53%), Gaps = 15/303 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L++ERGLS+ T+ SY  D + FL +L      +  I + +Q++   I  ++   +
Sbjct: 2   DYLHYLKVERGLSENTINSYGIDLKLFLEYL-----RENEIPSFKQVNKEVIVNYMQSEK 56

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                + S+ RS+S ++ F +YL + KI  +  +L +   KK   LP+ L +++   L+ 
Sbjct: 57  NNNKANSSILRSVSSLRKFFQYLAQEKIIEKDPMLLIDTPKKKQHLPQVLTKEEVEKLL- 115

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                + +  + +  R+ A+L L+Y  GLRISE ++L  +++     TL+  GKG K RI
Sbjct: 116 ----RSPNTGQVLGLRDRAMLELMYATGLRISEIINLKLEDLHLTMGTLQTLGKGHKERI 171

Query: 200 VPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+     K +  Y +   P  L       LF    G  L      + ++   R  G+  
Sbjct: 172 VPVGDEAIKWVNRYLEEARPKLLKQKRSNYLFLNFHGNNLTRQGVWKNLKAEVRKAGIQK 231

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + T HTLRHSFATH+L NG DLR +Q +LGH  +STTQIYT++++K     + +IY++ H
Sbjct: 232 NITPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHLSNKQ----LADIYNRAH 287

Query: 319 PSI 321
           P  
Sbjct: 288 PRA 290


>gi|227890931|ref|ZP_04008736.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus
           salivarius ATCC 11741]
 gi|227867340|gb|EEJ74761.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus
           salivarius ATCC 11741]
          Length = 290

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 100/303 (33%), Positives = 162/303 (53%), Gaps = 15/303 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L++ERGLS+ T+ SY  D + FL +L      +  I + +Q++   I  ++   +
Sbjct: 2   DYLHYLKVERGLSENTINSYGIDLKLFLEYL-----RENEIPSFKQVNKEVIVNYMQAEK 56

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                + S+ RS+S ++ F +YL + KI  +  +L +   KK   LP+ L +++   L+ 
Sbjct: 57  NNNKANSSILRSVSSLRKFFQYLAQEKIIEKDPMLLIDTPKKKQHLPQVLTKEEVEKLL- 115

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
               H+ +  + +  R+ A+L L+Y  GLRISE ++L  +++     TL+  GKG K RI
Sbjct: 116 ----HSPNTGQVLGLRDRAMLELMYATGLRISEIINLKLEDLHLTMGTLQTLGKGHKERI 171

Query: 200 VPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+     K +  Y +   P  L       LF    G  L      + ++   R  G+  
Sbjct: 172 VPVGDEAIKWVNRYLEEARPKLLKQKRSNYLFLNFHGNNLTRQGVWKNLKAEVRKAGIQK 231

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + T HTLRHSFATH+L NG DLR +Q +LGH  +STTQIYT++++K   D    IY++ H
Sbjct: 232 NITPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHLSNKQLTD----IYNRAH 287

Query: 319 PSI 321
           P  
Sbjct: 288 PRA 290


>gi|104773902|ref|YP_618882.1| site-specific recombinase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103422983|emb|CAI97665.1| Site-specific recombinase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 298

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 101/311 (32%), Positives = 163/311 (52%), Gaps = 17/311 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L ++  ++L+  +IERGLS  T+ +Y+ D    L FLAF  EE++    +  +   EI 
Sbjct: 3   KLAEQINDYLRYSQIERGLSPNTIAAYQQDL---LEFLAFVKEEQMPAWPLEAV---EID 56

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           AF++K R     + S+ R +S +  F ++L ++++     +  +   K+   +P AL E 
Sbjct: 57  AFLAKERDLGKANSSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEA 116

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L++         T  +  R+ A+L LLY  G+R+SEA++L   ++  +   +++ G
Sbjct: 117 EVGKLLEQ-----PDLTTDLGIRDRALLELLYATGMRVSEAVNLQLADVHANLQLIKVLG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           KG K R++P+       I  Y  +    L         LF   RG  L      + I++ 
Sbjct: 172 KGSKERLIPVSALALDWIKRYLPVRDQQLLKRGKSSDYLFLNSRGGQLTRQAVWQKIKKY 231

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  G+    T HTLRHSFATHLL +G DLR +Q ILGH  +STTQIYTN+  K+  D  
Sbjct: 232 CQQAGIAKDVTPHTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYTNLTQKHILD-- 289

Query: 311 MEIYDQTHPSI 321
             +Y +THP I
Sbjct: 290 --VYQKTHPRI 298


>gi|206576348|ref|YP_002236649.1| tyrosine recombinase XerD [Klebsiella pneumoniae 342]
 gi|290511308|ref|ZP_06550677.1| tyrosine recombinase XerD [Klebsiella sp. 1_1_55]
 gi|206565406|gb|ACI07182.1| tyrosine recombinase XerD [Klebsiella pneumoniae 342]
 gi|289776301|gb|EFD84300.1| tyrosine recombinase XerD [Klebsiella sp. 1_1_55]
          Length = 298

 Score =  274 bits (702), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 94/309 (30%), Positives = 155/309 (50%), Gaps = 17/309 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L + + +L  L +ER L++ TL +Y  D    + +L           ++  +   +++A 
Sbjct: 5   LAQIEQFLDALWLERNLAENTLSAYRRDLTMLVEWLHHRG------LSLASVGSDDLQAL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R+T      S  R LS ++ F ++L + KI  +     + + K    LP+ L+E Q 
Sbjct: 59  LAERQTGGYKATSTARLLSAVRRFFQHLYREKIRPDDPSALLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+   L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  LR+ GKG
Sbjct: 119 ERLLQAPLVEQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVLRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y     P+ LN      LF   R + +    F   I+     
Sbjct: 174 NKERLVPLGEEAVMWVENYLEYGRPWLLNGVASDVLFPSQRAQQMTRQTFWHRIKHYAVL 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSAKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHPSI 321
           ++ Q HP  
Sbjct: 290 LHQQHHPRA 298


>gi|126665073|ref|ZP_01736056.1| site-specific tyrosine recombinase XerD [Marinobacter sp. ELB17]
 gi|126630443|gb|EBA01058.1| site-specific tyrosine recombinase XerD [Marinobacter sp. ELB17]
          Length = 314

 Score =  274 bits (702), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 98/312 (31%), Positives = 148/312 (47%), Gaps = 14/312 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           VS E       +   + +E GLS+ T ++Y  D      +L       + I T      +
Sbjct: 15  VSAEDDAIIARFCDAIWLEDGLSEKTREAYRSDLGGLAQWLQGQPGTPLLIAT----QRS 70

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++  ++S      +   +  R LSGI+ F +YL +  +  E   L + + K +  LP  L
Sbjct: 71  DLLTWLSGGLAGGVKASTAARRLSGIRRFYRYLLREGLIPEDPTLRIESPKLTRPLPDTL 130

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            E +   L+             I+ R+ A+L +LYGCGLR++E  SL    +   Q  +R
Sbjct: 131 TEAEVNALLTE-----PDPEVPIELRDKAMLEILYGCGLRVTELTSLRLDQVNLRQGVVR 185

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           I GKGDK R+VPL       +  Y      +L   +    LF G R K +    F   I+
Sbjct: 186 ITGKGDKDRLVPLGEEAIDWLQRYIKEARPELLKGHACDDLFPGNRPKAMTRQTFWHRIK 245

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                 G+    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V  +    
Sbjct: 246 HYAARTGIQKHLSPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVARQR--- 302

Query: 309 WMMEIYDQTHPS 320
            + E++ Q HP 
Sbjct: 303 -LQELHRQHHPR 313


>gi|228992559|ref|ZP_04152486.1| Tyrosine recombinase xerC [Bacillus pseudomycoides DSM 12442]
 gi|228767193|gb|EEM15829.1| Tyrosine recombinase xerC [Bacillus pseudomycoides DSM 12442]
          Length = 302

 Score =  274 bits (702), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 158/309 (51%), Gaps = 17/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R ++
Sbjct: 8   KLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYVDVRLYL 62

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +K+  +S+ R +S ++S  ++L +     ++        KK  S+P+ L  ++  
Sbjct: 63  TTLHDEKLARKSVARKVSSLRSLYRFLMREGYREDNPFALASLPKKELSIPKFLYVEELE 122

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L +   + T      +  R+ A+L L+Y  G+R+SE +SL   +I     T+ + GKG 
Sbjct: 123 KLFEVSDVKTP-----LGQRDQALLELMYATGIRVSECVSLQLTDIDFSVGTILVTGKGK 177

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRR 252
           K R VP     + A++ Y +     L    +     +F   +GKPL     +  + +L +
Sbjct: 178 KQRYVPFGSYAQDALITYIENGRKQLAKKTEEHSQMVFLNAKGKPLTDRGVRYILNELIK 237

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +     +  
Sbjct: 238 KASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER----LRS 293

Query: 313 IYDQTHPSI 321
           +Y + HP  
Sbjct: 294 VYMKHHPRA 302


>gi|91975033|ref|YP_567692.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris
           BisB5]
 gi|91681489|gb|ABE37791.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris
           BisB5]
          Length = 329

 Score =  274 bits (702), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 130/314 (41%), Positives = 186/314 (59%), Gaps = 8/314 (2%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            S +L  E   WL +L  ER LS  TL++Y  D RQFLIFLA +    +T+    +L  T
Sbjct: 22  ASADLNAEFTRWLSHLRAERRLSGKTLEAYARDLRQFLIFLAGHWGGVVTLGRFARLEAT 81

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++RAF++ RR   I  RSL R+L+G++SF ++L++    +   + ++R  K   SLP+ +
Sbjct: 82  DVRAFMAARRGDAIAGRSLMRALAGLRSFGRFLEREGKGSVGALSSVRAPKIKKSLPKPI 141

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQST 187
               A  L D           WI  R++A++ LLYG GLRISEAL L  +++       T
Sbjct: 142 QIAAAKRLADADERAGEDRETWILVRDAAVMALLYGSGLRISEALGLRRRDVPAPGKGDT 201

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           L + GKG+K R+VP+L +V   I +Y   CP  L      P+F G RG PL+P + Q  +
Sbjct: 202 LIVLGKGNKTRMVPVLQNVLAQIADYASACPHPL--PPDGPMFVGARGGPLSPRIIQLAM 259

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +LR  LGLP S T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ+YT ++++   
Sbjct: 260 ERLRGSLGLPDSATPHALRHSFATHLLTRGGDLRAIQELLGHASLSTTQVYTGIDTER-- 317

Query: 308 DWMMEIYDQTHPSI 321
             ++E+Y+  HP  
Sbjct: 318 --LLEVYNSAHPRA 329


>gi|212638838|ref|YP_002315358.1| site-specific tyrosine recombinase XerD [Anoxybacillus flavithermus
           WK1]
 gi|212560318|gb|ACJ33373.1| Site-specific recombinase XerD [Anoxybacillus flavithermus WK1]
          Length = 300

 Score =  274 bits (702), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 84/309 (27%), Positives = 151/309 (48%), Gaps = 16/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            + ++++  L +ER L+  T+ SYE D ++++ +L    +    +     ++   I  F+
Sbjct: 5   DQVKDFIHYLIVERNLAHNTIVSYERDLKKYVQYLQKVEQ----LCHWNDVTRFHIMQFL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
              + +    +++ R L+ ++SF ++L + K   +   +++   +    LP  L+  +  
Sbjct: 61  KFLKEKGSSPKTIARHLASVRSFHQFLLREKAVDQDPTVHIETPQLPRKLPNVLSMAEVE 120

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L++        +      R+ A+L LLY  G+R+SE + L   ++      +R  GKG 
Sbjct: 121 ALLE-----APKQNTPFSIRDKAMLELLYATGIRVSELIQLNISDVHLTMGFIRCYGKGR 175

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K RIVP+     +A+  Y +    +L          LF    G+ L      + +++L +
Sbjct: 176 KERIVPIGKMATEALKRYIEQGRPELLQRKKGTTDALFLNHHGERLTRQGCWKILKRLAQ 235

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        + +
Sbjct: 236 EANIQKQLTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----LKD 291

Query: 313 IYDQTHPSI 321
           +Y Q HP  
Sbjct: 292 VYKQFHPRA 300


>gi|257876556|ref|ZP_05656209.1| phage integrase [Enterococcus casseliflavus EC20]
 gi|257810722|gb|EEV39542.1| phage integrase [Enterococcus casseliflavus EC20]
          Length = 296

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 99/308 (32%), Positives = 158/308 (51%), Gaps = 16/308 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           ++  ++L  L IERGLS+ T  SY+ D +Q+L FL     +K  +   +Q+    + +F+
Sbjct: 3   EQIIDYLHYLTIERGLSQNTRASYQRDLQQYLAFL-----QKKQVTQWQQIDRVIVLSFL 57

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
              +       ++ R +S ++ F +YL++ ++T    + ++ + KK   LP  L+ ++  
Sbjct: 58  QSLQEAGKSSATVIRMVSSLRRFHQYLRQERLTDHDPMQHIDSPKKQQKLPDTLSLQEVE 117

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L++     T      +  R+ AIL ++Y  GLR+SE + L   ++      L+  GKGD
Sbjct: 118 RLIE-----TPDTRAVLGIRDRAILEVMYATGLRVSELIGLKLNDLHLSMGLLQTTGKGD 172

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLN--IQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K RIVPL     + I  Y       L      +  LF    G  L+     + ++ L R 
Sbjct: 173 KERIVPLGDLAIQWIETYLSDARPYLTRKTPDESHLFVNNHGTQLSRQGIWKNLKALVRQ 232

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+  + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT++  K     M E+
Sbjct: 233 AGITKNVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR----MTEV 288

Query: 314 YDQTHPSI 321
           Y Q  P  
Sbjct: 289 YKQHFPRA 296


>gi|257867648|ref|ZP_05647301.1| phage integrase [Enterococcus casseliflavus EC30]
 gi|257873977|ref|ZP_05653630.1| phage integrase [Enterococcus casseliflavus EC10]
 gi|257801731|gb|EEV30634.1| phage integrase [Enterococcus casseliflavus EC30]
 gi|257808141|gb|EEV36963.1| phage integrase [Enterococcus casseliflavus EC10]
          Length = 296

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 99/308 (32%), Positives = 158/308 (51%), Gaps = 16/308 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           ++  ++L  L IERGLS+ T  SY+ D +Q+L FL     +K  +   +Q+    + +F+
Sbjct: 3   EQIIDYLHYLTIERGLSQNTRASYQRDLQQYLAFL-----QKKQVTQWQQIDRVIVLSFL 57

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
              +       ++ R +S ++ F +YL++ ++T    + ++ + KK   LP  L+ ++  
Sbjct: 58  QSLQDAGKSSATVIRMVSSLRRFHQYLRQERLTDHDPMQHIDSPKKQQKLPDTLSLQEVE 117

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L++     T      +  R+ AIL ++Y  GLR+SE + L   ++      L+  GKGD
Sbjct: 118 RLIE-----TPDTRAVLGIRDRAILEVMYATGLRVSELIGLKLNDLHLSMGLLQTTGKGD 172

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLN--IQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K RIVPL     + I  Y       L      +  LF    G  L+     + ++ L R 
Sbjct: 173 KERIVPLGDLAIQWIETYLSDARPYLTRKTPDESHLFVNNHGTQLSRQGIWKNLKALVRQ 232

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+  + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT++  K     M E+
Sbjct: 233 AGITKNVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR----MTEV 288

Query: 314 YDQTHPSI 321
           Y Q  P  
Sbjct: 289 YKQHFPRA 296


>gi|221310269|ref|ZP_03592116.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314592|ref|ZP_03596397.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319515|ref|ZP_03600809.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323791|ref|ZP_03605085.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|255767509|ref|NP_390232.2| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|321311827|ref|YP_004204114.1| site-specific tyrosine recombinase XerD [Bacillus subtilis BSn5]
 gi|251757430|sp|P46352|XERD_BACSU RecName: Full=Tyrosine recombinase xerD
 gi|225185137|emb|CAB14283.2| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|320018101|gb|ADV93087.1| site-specific tyrosine recombinase XerD [Bacillus subtilis BSn5]
          Length = 296

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 95/309 (30%), Positives = 159/309 (51%), Gaps = 14/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + ++++  + +ERGLS+ T+ SYE D + + ++L     E + +     ++   I  
Sbjct: 1   MKDQIKDFIHYVMVERGLSQNTIVSYERDLKSYSLYLT----ETLHVTDWNHVTRIHIIQ 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++   +      ++  R L+ I+SF ++L + K+T +   +++   K   +LP+ L   +
Sbjct: 57  YLKHLKDSGKSGKTSARHLASIRSFHQFLLREKVTDKDPSVHIETQKTERALPKVLALNE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D     T   T     R+ A+L LLY  G+R+SE + L   ++      +R  GK
Sbjct: 117 VERLLD-----TPKLTSPFGYRDKAMLELLYATGIRVSEMIELKTADVHLSMGFIRCFGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K RIVP+  +   AI EY        L  N+   LF    GK ++   F + ++++  
Sbjct: 172 GRKERIVPIGEAAASAIEEYMTKARGKLLKNNVSDALFLNHHGKQISRQGFWKNLKKIAL 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        + +
Sbjct: 232 EAGIKKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----LKD 287

Query: 313 IYDQTHPSI 321
           +Y Q HP  
Sbjct: 288 VYKQFHPRA 296


>gi|260583968|ref|ZP_05851716.1| tyrosine recombinase XerD [Granulicatella elegans ATCC 700633]
 gi|260158594|gb|EEW93662.1| tyrosine recombinase XerD [Granulicatella elegans ATCC 700633]
          Length = 297

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 90/312 (28%), Positives = 159/312 (50%), Gaps = 17/312 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +    ++ +L I+ GLS+ T+ SY+ D  +F  FL         I+  +++ Y+ I  
Sbjct: 1   MQRNLDYFVDSLAIQ-GLSQNTVMSYQRDLMKFYQFLKEQQ-----IRDWKEVDYSLIVL 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+   +       S  R +S +K F K+L++ ++   + +  ++  KKS  LP+AL   +
Sbjct: 55  FLQDLKQDGYATSSTSRMISCLKKFFKFLQQEQLVETNPVQPLKVPKKSKMLPKALTVDE 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++++        +  +  R+ A+L LLY  G+R+SE ++L   ++  +   L+  GK
Sbjct: 115 VTQVLNSC-----DTSTVLGLRDKAMLELLYATGMRVSELITLKLSDLHLELGFLQTIGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G+K RI+P+  +    +  Y        +   N    LF   RG       F + ++++ 
Sbjct: 170 GNKQRIIPIGQAATNWVQHYLTYARVVLEQESNPVEYLFLNHRGNGFTRQGFWKNLKKIV 229

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +  G+    + HTLRHSFATH+L  G DLR +Q +LGH  +STTQIYT++ ++     M 
Sbjct: 230 QEAGVHKDVSPHTLRHSFATHILEAGADLRIVQELLGHSDISTTQIYTHLTNER----MK 285

Query: 312 EIYDQTHPSITQ 323
           EIY Q HP   +
Sbjct: 286 EIYQQAHPRAKK 297


>gi|238754564|ref|ZP_04615918.1| Tyrosine recombinase xerD [Yersinia ruckeri ATCC 29473]
 gi|238707195|gb|EEP99558.1| Tyrosine recombinase xerD [Yersinia ruckeri ATCC 29473]
          Length = 299

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 91/306 (29%), Positives = 154/306 (50%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L +ER L++ TL SY  D +    +L  +       +++      ++++F+++
Sbjct: 9   IEQFLDALWLERNLAENTLASYRLDLQALAGWLQRHN------KSLLLADPLDLQSFLAE 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++ F +YL + K+  +     + + K    LP+ L+E Q   L
Sbjct: 63  RIEGGYKATSSARLLSAMRRFFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L++ +    ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K 
Sbjct: 123 -----LNSPNVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKE 177

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       I  Y     P+ +N      LF   R + +    F   I+      G+
Sbjct: 178 RLVPLGEEAVYWIENYMEYGRPWLINGQALDVLFPSNRSQQMTRQTFWHRIKHYAILAGI 237

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 238 DSERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQ 293

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 294 QHHPRA 299


>gi|303248297|ref|ZP_07334559.1| integrase family protein [Desulfovibrio fructosovorans JJ]
 gi|302490322|gb|EFL50234.1| integrase family protein [Desulfovibrio fructosovorans JJ]
          Length = 331

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 100/306 (32%), Positives = 156/306 (50%), Gaps = 7/306 (2%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L  ++G S  TL +Y  D  QF  FL       I++ T  +++    R F+++  
Sbjct: 24  AFLDYLAAQKGYSPATLAAYGVDLDQFEEFLR---GRGISLATPEKVAREHGRGFLAELH 80

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            ++    S+ R LS ++ F +Y+ ++K+     +  ++N K     P+ALN  +A+ LV 
Sbjct: 81  RRREAKTSMGRKLSALRGFFRYMLRKKLVAADPLAGLKNPKTDKRQPKALNVDEAVALVS 140

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                 + +      R+ A+  LLYG GLR++EA+ L   ++   Q   R+ GKG K R+
Sbjct: 141 PAPGAPAADGSREACRDLALAELLYGSGLRVAEAVGLDLDDVSIAQGVARVYGKGGKERL 200

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
            PL  + R+ + EY            +   F G RG  LN     R +  L R  G+   
Sbjct: 201 APLSDASRERLREYAMRRAEFTPDPREQAFFLGSRGGRLNRRQAARIVDALAREAGIAKH 260

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           T  H LRHSFATHLL +G D+RS+Q +LGH RLSTTQ YT++        +M++YD+ HP
Sbjct: 261 THPHMLRHSFATHLLESGADMRSVQELLGHARLSTTQRYTHL----ELARIMQVYDKAHP 316

Query: 320 SITQKD 325
              + D
Sbjct: 317 RSDEAD 322


>gi|119775871|ref|YP_928611.1| integrase/recombinase XerD [Shewanella amazonensis SB2B]
 gi|119768371|gb|ABM00942.1| integrase/recombinase XerD [Shewanella amazonensis SB2B]
          Length = 321

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 97/320 (30%), Positives = 152/320 (47%), Gaps = 16/320 (5%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           E +  P   S   +     +L  L   +GLS  TL +Y  D  QF  FL   T + I + 
Sbjct: 16  EKSGAPLKPSAAGMALIDAFLDELWSLQGLSDNTLSAYRTDLCQFDAFL---TAKGIGLL 72

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            +  L+   +R +++ R  Q +   S  R LS ++ F ++       +E     + + K 
Sbjct: 73  ALDSLT---LRDYLAYRFEQGMAKTSTARMLSSLRRFYRHQLVSGTLSEDPTALIESPKL 129

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
             SLP +L+E Q   L     L        ++ R+ A+L LLY  GLR+SE + L    +
Sbjct: 130 PKSLPGSLSEAQVEQL-----LAEPSSDDPVECRDKAMLELLYATGLRVSELVGLGMSEL 184

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNP 240
              Q  +RI GKG K R+VP+    + A+ ++        L       +F   RG+ +  
Sbjct: 185 GLRQGLVRIIGKGGKERLVPMGEVAQDALEQFLAGPRQMLLKQGATEVVFPSNRGQQMTR 244

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             F   I+      G+    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+
Sbjct: 245 QTFWHRIKLYALRAGISTELSPHTLRHAFATHLLNHGADLRVVQLLLGHSSLSTTQIYTH 304

Query: 301 VNSKNGGDWMMEIYDQTHPS 320
           V        + +++++ HP 
Sbjct: 305 V----ARTRLADLHEKHHPR 320


>gi|289435303|ref|YP_003465175.1| integrase/recombinase XerD [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171547|emb|CBH28093.1| integrase/recombinase XerD [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 297

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 152/306 (49%), Gaps = 15/306 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             ++L  L +E+GLS  T+++YE D   F+ ++         +     L  ++I  F++ 
Sbjct: 5   IDDFLHFLIVEKGLSANTIKAYERDLHYFVSYINTARP----LTDPNTLERSDIVGFMAF 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R +    RS+ R ++ ++SF  YL      +   ++ +   K++  LP+ LN      L
Sbjct: 61  ARKEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVELL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +      +S  +  +  R+ A++ +LY  GLR++E + L   ++      ++  GKGDK 
Sbjct: 121 L-----SSSDTSTPLGLRDQAMMEILYATGLRVTELVQLKMDDLHLQMGFIQTIGKGDKE 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           RI+PL  +    + +Y +     L         +F    G+ L    F + ++ + +  G
Sbjct: 176 RIIPLGKTATTVLEQYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESG 235

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT+V        + ++Y 
Sbjct: 236 IEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLR----LKDVYK 291

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 292 QFHPRA 297


>gi|26988201|ref|NP_743626.1| site-specific tyrosine recombinase XerD [Pseudomonas putida KT2440]
 gi|148549459|ref|YP_001269561.1| site-specific tyrosine recombinase XerD [Pseudomonas putida F1]
 gi|34222835|sp|Q88MV0|XERD_PSEPK RecName: Full=Tyrosine recombinase xerD
 gi|24982938|gb|AAN67090.1|AE016337_13 integrase/recombinase XerD [Pseudomonas putida KT2440]
 gi|148513517|gb|ABQ80377.1| tyrosine recombinase XerD subunit [Pseudomonas putida F1]
          Length = 298

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 97/304 (31%), Positives = 146/304 (48%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GLS  T  SY  D   F  +L  ++       ++       I   ++ 
Sbjct: 9   IDQFLDALWLEKGLSDNTRVSYRSDLALFNGWLQEHS------VSLPDAGRDLILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  Q    RS  R LSG++ F +YL + K+      L +   +    LP++L+E     L
Sbjct: 63  RLDQGYKPRSTARFLSGLRGFFRYLLREKLVAIDPTLQVDMPQLGKPLPKSLSEADVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +           + I  R+ A+L +LY CGLR++E +SLT   +   Q  LR+ GKG K 
Sbjct: 123 L-----QAPDLGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y      +L N      LF   RG+ +    F   I+   R  G+
Sbjct: 178 RLVPMGEEAVVWLERYQRDGRAELLNGRPSDVLFPSQRGEQMTRQTFWHRIKHHARVAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + +++ Q
Sbjct: 238 DKPLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR----LQQLHAQ 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|332994410|gb|AEF04465.1| tyrosine recombinase [Alteromonas sp. SN2]
          Length = 305

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 155/305 (50%), Gaps = 14/305 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                ++  L +E+GLS  T QSY  D  +  IF          I+ I  L+   ++ ++
Sbjct: 14  AHINGFIDMLWLEKGLSDHTQQSYRTDLTKLAIFC-----NNQGIKDIAVLTTEMMQDYL 68

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           + R  + +  RS +R++S +++F  YL  ++I  ++ I ++ N K   SLP +L+E+Q  
Sbjct: 69  AYRHDKGLSARSTQRAMSALRAFYTYLIGKQIRVDNPISSLSNPKLPKSLPASLSERQVE 128

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+   L+        I+ R+ ++L +LY  GLR+SE + L    +   Q  +R+ GKG+
Sbjct: 129 DLLAAPLIEDP-----IECRDKSMLEVLYATGLRVSELIGLQMSEVSLQQGVVRVTGKGN 183

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R+VPL     + +L Y       L       ++   RG+ +    F   I+       
Sbjct: 184 KDRLVPLGEDAIEWLLTYIKTARPVLATKQSDYVYLSKRGQKMTRQTFWHRIKYYAVKAN 243

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  +  
Sbjct: 244 IEQHLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LQTLIH 299

Query: 316 QTHPS 320
             HP 
Sbjct: 300 SHHPR 304


>gi|325571148|ref|ZP_08146720.1| integrase/recombinase XerD [Enterococcus casseliflavus ATCC 12755]
 gi|325156233|gb|EGC68419.1| integrase/recombinase XerD [Enterococcus casseliflavus ATCC 12755]
          Length = 296

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 98/308 (31%), Positives = 157/308 (50%), Gaps = 16/308 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           ++  ++L  L IERGLS+ T  SY+ D +Q+L FL     +K  +   +Q+    + +F+
Sbjct: 3   EQIIDYLHYLTIERGLSQNTRASYQRDLQQYLAFL-----QKKQVTQWQQIDRVIVLSFL 57

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
              +       ++ R +S ++ F ++L++ + T    + ++ + KK   LP  L+ ++  
Sbjct: 58  QSLQEAGKSSATVIRMVSSLRRFHQFLRQERFTDHDPMQHIDSPKKQQKLPDTLSLQEVE 117

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L++     T      +  R+ AIL ++Y  GLR+SE + L   ++      L+  GKGD
Sbjct: 118 RLIE-----TPDTRAVLGIRDRAILEVMYATGLRVSELIGLKLNDLHLSMGLLQTTGKGD 172

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLN--IQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K RIVPL     + I  Y       L      +  LF    G  L+     + ++ L R 
Sbjct: 173 KERIVPLGDLAIQWIETYLSDARPYLTRKTPDESHLFVNNHGTQLSRQGIWKNLKALVRQ 232

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+  + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT++  K     M E+
Sbjct: 233 AGITKNVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR----MTEV 288

Query: 314 YDQTHPSI 321
           Y Q  P  
Sbjct: 289 YKQHFPRA 296


>gi|319406320|emb|CBI79957.1| integrase/recombinase XerC [Bartonella sp. AR 15-3]
          Length = 321

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 140/314 (44%), Positives = 196/314 (62%), Gaps = 9/314 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
                LL  R+NWL +L   R ++  T+ +YE DTRQFL FL  +   + T+  +  L  
Sbjct: 16  PADHTLLIARKNWLDHLTQTRRMAVHTVVAYERDTRQFLFFLCKHLGYQPTLNDLADLRV 75

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++RA+++ RRTQ I  RSL R+++ ++SF  YL + ++        +R  K   SLP++
Sbjct: 76  ADLRAYLAYRRTQNINARSLSRNMASLRSFFNYLSREQLVNVPAAKLVRTPKYPKSLPKS 135

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQST 187
           L  + AL +V     +      WI ARN+AIL LLYGCG+RISEAL+LTP+     +  +
Sbjct: 136 LTIESALRIVRED--NQQETEPWIIARNTAILILLYGCGMRISEALALTPEKFSDPNIKS 193

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           L I GKG K R++PL+P    AI  Y   CP+ L  N   P+FRG+RGKPL P + QR +
Sbjct: 194 LPITGKGGKTRLIPLIPIAHTAIKNYLKCCPYPLVNNQ--PIFRGVRGKPLQPAIIQRTV 251

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           + LR +LGLP +TT H LRHSFATHLLS GGDLR+IQ +LGH  LSTTQIYT++++ +  
Sbjct: 252 QNLRAHLGLPETTTPHALRHSFATHLLSRGGDLRTIQELLGHACLSTTQIYTHIDTNH-- 309

Query: 308 DWMMEIYDQTHPSI 321
             ++EIY + HP  
Sbjct: 310 --LLEIYQKAHPRA 321


>gi|257869544|ref|ZP_05649197.1| phage integrase [Enterococcus gallinarum EG2]
 gi|257803708|gb|EEV32530.1| phage integrase [Enterococcus gallinarum EG2]
          Length = 296

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 100/310 (32%), Positives = 160/310 (51%), Gaps = 16/310 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++  ++L  L IERGLS+ T +SYE D  Q+L FL         I+  + +    I +
Sbjct: 1   MKEQIIDYLHYLTIERGLSQNTRKSYERDLEQYLTFLTEQH-----IKDWQAVDRVLILS 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+ + +       ++ R +S ++ F ++L++ + T    + ++ + KK   LP  L+  +
Sbjct: 56  FLQQLQQSGKSSATIIRMVSSLRRFHQFLRQERFTDHDPMQHIDSPKKQQKLPDTLSLSE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++     T    + +  R+ AIL ++Y  GLR+SE + L  +++      L+  GK
Sbjct: 116 VERLIE-----TPDTKEVLGIRDRAILEVMYATGLRVSELIGLQLKDLHLSMGLLQTTGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLN--IQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GDK RIVPL     + I  Y +     L      +  LF    GK L+     + ++ L 
Sbjct: 171 GDKERIVPLGDLAIQWIETYLEEARPFLTRKHPEESHLFVNNHGKQLSRQGIWKNLKALV 230

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R  G+  + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT++  K     M 
Sbjct: 231 RKAGITKNVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR----MT 286

Query: 312 EIYDQTHPSI 321
           E+Y Q  P  
Sbjct: 287 EVYKQHFPRA 296


>gi|228998607|ref|ZP_04158194.1| Tyrosine recombinase xerC [Bacillus mycoides Rock3-17]
 gi|229006107|ref|ZP_04163795.1| Tyrosine recombinase xerC [Bacillus mycoides Rock1-4]
 gi|228755183|gb|EEM04540.1| Tyrosine recombinase xerC [Bacillus mycoides Rock1-4]
 gi|228761075|gb|EEM10034.1| Tyrosine recombinase xerC [Bacillus mycoides Rock3-17]
          Length = 302

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 158/309 (51%), Gaps = 17/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R ++
Sbjct: 8   KLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYVDVRLYL 62

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +K+  +S+ R +S ++S  ++L +     ++        KK  S+P+ L  ++  
Sbjct: 63  TTLHDEKLARKSVARKVSSLRSLYRFLMREGYREDNPFALASLPKKDLSIPKFLYVEELE 122

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L +   + T      +  R+ A+L L+Y  G+R+SE +SL   +I     T+ + GKG 
Sbjct: 123 KLFEVSDVKTP-----LGQRDQALLELMYATGIRVSECVSLQLTDIDFSVGTILVTGKGK 177

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRR 252
           K R VP     + A++ Y +     L    +     +F   +GKPL     +  + +L +
Sbjct: 178 KQRYVPFGSYAQDALITYIENGRKQLAKKTEEHSQMVFLNAKGKPLTDRGVRYILNELIK 237

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +     +  
Sbjct: 238 KASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER----LRS 293

Query: 313 IYDQTHPSI 321
           +Y + HP  
Sbjct: 294 VYMKHHPRA 302


>gi|148559918|ref|YP_001259740.1| site-specific tyrosine recombinase XerC [Brucella ovis ATCC 25840]
 gi|148371175|gb|ABQ61154.1| tyrosine recombinase XerC [Brucella ovis ATCC 25840]
          Length = 315

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 141/314 (44%), Positives = 196/314 (62%), Gaps = 9/314 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
               +L   R+ WL++L+  R LS  TL +YE DTRQFL FL  +  E  +++ I  L  
Sbjct: 10  PARADLAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRI 69

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++R+F++ RR    G R+L R L+G++S L++L+KR +   +    MR  ++  SLP+ 
Sbjct: 70  ADLRSFLANRRNDGAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKP 129

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQST 187
           L    A  +V         E  WI ARN+A+L LLYGCGLRISEAL L+          +
Sbjct: 130 LTADDARRVVSAD--GQMAEEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARS 187

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           + I GKG K R+VPLLP+V KA+ +Y  LCPFDL+     PLFRG +G PL+  + QR +
Sbjct: 188 MTITGKGSKTRLVPLLPAVHKAVAQYRALCPFDLSAGQ--PLFRGAKGGPLHAAIIQREM 245

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++LR  LGLP S T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ+YT ++++   
Sbjct: 246 QKLRAGLGLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGIDTQR-- 303

Query: 308 DWMMEIYDQTHPSI 321
             ++E+YD+THP  
Sbjct: 304 --LLEVYDKTHPRA 315


>gi|288933626|ref|YP_003437685.1| tyrosine recombinase XerD [Klebsiella variicola At-22]
 gi|288888355|gb|ADC56673.1| tyrosine recombinase XerD [Klebsiella variicola At-22]
          Length = 298

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 93/309 (30%), Positives = 155/309 (50%), Gaps = 17/309 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L + + +L  L +ER L++ TL +Y  D    + +L           ++  +   +++A 
Sbjct: 5   LAQIEQFLDALWLERNLAENTLSAYRRDLTMLVEWLHHRG------LSLASVGSDDLQAL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R+T      S  R +S ++ F ++L + KI  +     + + K    LP+ L+E Q 
Sbjct: 59  LAERQTGGYKATSTARLISAVRRFFQHLYREKIRPDDPSALLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+   L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  LR+ GKG
Sbjct: 119 ERLLQAPLVEQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVLRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y     P+ LN      LF   R + +    F   I+     
Sbjct: 174 NKERLVPLGEEAVMWVENYLEYGRPWLLNGVASDVLFPSQRAQQMTRQTFWHRIKHYAVL 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSAKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHPSI 321
           ++ Q HP  
Sbjct: 290 LHQQHHPRA 298


>gi|260893180|ref|YP_003239277.1| tyrosine recombinase XerD [Ammonifex degensii KC4]
 gi|260865321|gb|ACX52427.1| tyrosine recombinase XerD [Ammonifex degensii KC4]
          Length = 302

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 90/314 (28%), Positives = 146/314 (46%), Gaps = 16/314 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L K  + +L+ L +ERGL+  T+ +Y  D + F  F+A   +  +   ++R         
Sbjct: 2   LEKWLEEFLEFLRVERGLADNTIAAYRTDLKHFCAFVARR-QFSLDPSSLRDACL----C 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKSNSLPRALNEK 132
           ++ +         ++ R L+ +KSF  YL  +           + + K    LP+ L  +
Sbjct: 57  YLYELNAAGYLASTVARRLAALKSFCAYLATQAGYLPWDPAEELSSPKIPERLPKVLRPE 116

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L+                R+ A+L L Y  G+R+SE + L   ++  +   +R+ G
Sbjct: 117 EVERLL-----TAPRTNTPQGLRDRALLELAYATGMRVSELVGLDVDHLNLEAGYVRVLG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG K RIVP+    +  + EY +     L        LF   RG  L      + ++   
Sbjct: 172 KGGKERIVPVGRVAQHYLREYLEKAWPRLVKDRRTSALFVNRRGGRLTRQAVFKLLKDYA 231

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R  GL  + + HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT++ S      + 
Sbjct: 232 RQAGLTSAPSPHTLRHSFATHLLENGADLRVVQELLGHVSISTTQIYTHLTSTR----VR 287

Query: 312 EIYDQTHPSITQKD 325
           E+Y + HP   + +
Sbjct: 288 EVYRRAHPRSRKTE 301


>gi|85706394|ref|ZP_01037488.1| tyrosine recombinase XerC [Roseovarius sp. 217]
 gi|85669167|gb|EAQ24034.1| tyrosine recombinase XerC [Roseovarius sp. 217]
          Length = 306

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 125/312 (40%), Positives = 186/312 (59%), Gaps = 9/312 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++S         WL   +  +G +  T+ +Y  D   FL F+  +  E   +  + +++ 
Sbjct: 1   MISPAARDALSAWLAAQKALKGAAANTIDAYARDVGDFLRFMTQHHGETQGLGALSRITT 60

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           +++RA+++  R   +G RSL R LS +KSF ++L +R+    + +L+ R+ K    LPR 
Sbjct: 61  SDMRAWMAHTRGGDVGPRSLARKLSAVKSFYRWLSEREGFEPTAVLSTRSPKFQRKLPRP 120

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+ + A  ++D   L     T WI AR+ A++ LLYGCGLRISEAL LT  + +   + L
Sbjct: 121 LSPEAASEMIDT--LEVQSLTPWIAARDQAVVTLLYGCGLRISEALGLTGAD-LPIGTVL 177

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKG K R+VP++   R A+ +Y  LCP+D+  N   PLF G RG  L+P + Q+ + 
Sbjct: 178 RILGKGGKERLVPVIEPARAAVTQYARLCPYDIPRNG--PLFLGARGGALSPRLIQKVME 235

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           Q R  LGLP + T H +RHSFATHLL+ GGDLR+IQ +LGH  LSTTQ YT V++     
Sbjct: 236 QTRAQLGLPATATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTGVDTAR--- 292

Query: 309 WMMEIYDQTHPS 320
            +ME+Y +THP 
Sbjct: 293 -LMEVYARTHPQ 303


>gi|312139850|ref|YP_004007186.1| tyrosine recombinase xerd [Rhodococcus equi 103S]
 gi|311889189|emb|CBH48503.1| tyrosine recombinase XerD [Rhodococcus equi 103S]
          Length = 309

 Score =  274 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 89/317 (28%), Positives = 147/317 (46%), Gaps = 17/317 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL     ++L +L +ERG ++ TL SY  D  ++  FL     E      IR ++ T++ 
Sbjct: 3   ELGGLIDSYLDHLAVERGAARNTLTSYRRDLDRYARFL-----EARGTDDIRSVTETDVS 57

Query: 73  AFISKRRTQK-------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
            F+   R          +   S  R+L  ++   ++     +T+      ++       L
Sbjct: 58  EFVVALRKGDPAEGVVALAPSSAARALIAVRGLHRFAAAEGVTSGDVARAVKPPTPGRRL 117

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P++L     L +++      S +      R+ A+L LLY  G RISEA+ L   ++    
Sbjct: 118 PKSLPLDDVLAILEASGGDGSADNPRT-LRDRALLELLYSTGARISEAVGLDVDDLDTQS 176

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            ++ ++GKG K R+VP+      AI  Y       L++     LF  +RG  L+     +
Sbjct: 177 RSVLLRGKGGKERVVPVGRPAITAIDNYLVRGRPALSVRGGPALFLNVRGGRLSRQSAWQ 236

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +       G+ ++ + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V    
Sbjct: 237 VLHTAAEKAGIAVAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVT--- 293

Query: 306 GGDWMMEIYDQTHPSIT 322
               + E++ Q HP   
Sbjct: 294 -VGALREVWAQAHPRAR 309


>gi|90961911|ref|YP_535827.1| integrase/recombinase XerD/RipX family [Lactobacillus salivarius
           UCC118]
 gi|90821105|gb|ABD99744.1| Integrase/recombinase, XerD/RipX family [Lactobacillus salivarius
           UCC118]
          Length = 297

 Score =  274 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 99/303 (32%), Positives = 162/303 (53%), Gaps = 15/303 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L++ERGLS+ T+ SY  D + FL +L      +  I + +Q++   I  ++   +
Sbjct: 9   DYLHYLKVERGLSENTINSYGIDFKLFLEYL-----RENEIPSFKQVNKEVIVNYMQSEK 63

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                + S+ RS+S ++ F +YL + KI  +  +L +   KK   LP+ L +++   L  
Sbjct: 64  NNNKANSSILRSVSSLRKFFQYLAQEKIIEKDPMLLIDTPKKKQHLPQVLTKEEVEKL-- 121

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              L + +  + +  R+ A+L L+Y  GLRISE ++L  +++     TL+  GKG K RI
Sbjct: 122 ---LRSPNTGQVLGLRDRAMLELMYATGLRISEIINLKLEDLHLTMGTLQTLGKGHKERI 178

Query: 200 VPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+     K +  Y +   P  L       LF    G  L      + ++   R  G+  
Sbjct: 179 VPVGDEAIKWVNRYLEEARPKLLKQKRSNYLFLNFHGNNLTRQGVWKNLKAEVRKAGIQK 238

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + T HTLRHSFATH+L NG DLR +Q +LGH  +STTQIYT++++K     + +IY++ H
Sbjct: 239 NITPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHLSNKQ----LADIYNRAH 294

Query: 319 PSI 321
           P  
Sbjct: 295 PRA 297


>gi|81428639|ref|YP_395639.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78610281|emb|CAI55330.1| Site-specific DNA tyrosine recombinase, XerD [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 294

 Score =  274 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 96/304 (31%), Positives = 152/304 (50%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q++L  L+IERGLS+ T QSY  D +Q+  FL        T           +  F+  
Sbjct: 5   IQDYLHYLKIERGLSENTRQSYRQDLKQYQQFLVSQKLTSFTEDRF------IVLGFLQA 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           + T +    S+ RS+S ++ F +YL +     +  +L + + K+   LP  L+ ++   L
Sbjct: 59  QTTAQKAQSSITRSISTLRKFYQYLAREGRIQKDPMLQIDSPKQGRHLPAVLSSEEIERL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +      T   +  +  R+ AIL +LY  GLR+SE + L   ++      ++  GKGDK 
Sbjct: 119 L-----KTPDTSTPLGLRDRAILEVLYATGLRVSELVHLKLTDLHLSLGLIQTLGKGDKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RI+P+       I +Y +     L      P LF    G  L      + ++ + +  G+
Sbjct: 174 RIIPIGDVAVDWINQYLERSRNRLTKGKDSPYLFVNFHGNGLTRQGIWKNLKAIVQAAGI 233

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               T HTLRHSFAT LL NG DLR +Q +LGH  +STTQIYT+++ K+    + E+Y +
Sbjct: 234 DKDVTPHTLRHSFATVLLENGADLRIVQELLGHSDISTTQIYTHISKKH----LTEVYQR 289

Query: 317 THPS 320
           +HP 
Sbjct: 290 SHPR 293


>gi|152989006|ref|YP_001346765.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa
           PA7]
 gi|150964164|gb|ABR86189.1| tyrosine recombinase XerD [Pseudomonas aeruginosa PA7]
          Length = 298

 Score =  274 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 145/304 (47%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GL+  T ++Y  D  QF  +L  +         +  +    I   ++ 
Sbjct: 9   IDRFLDALWLEKGLADNTREAYRNDLEQFNAWLDGHGLR------LEGVGRDAILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  Q    RS  R LSG++ F +Y  +  +  E   L +   +    LP++L+E     L
Sbjct: 63  RLEQGYKARSTARFLSGLRGFYRYCLRDGLIAEDPTLQVDLPQLGKPLPKSLSEADVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +             +  R+  +L +LY CGLR+SE + LT + +   Q  +++ GKG K 
Sbjct: 123 L-----AAPEVDDPLGLRDRTMLEVLYACGLRVSELVGLTLEQVNLRQGVVKVFGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       +  Y      DL        LF  +RG+ +    F   I++  +   +
Sbjct: 178 RLVPLGEEAIGWLERYLREARADLLGGRPSDVLFPSLRGEQMTRQTFWHRIKRHAQVAAI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT++        + +++ +
Sbjct: 238 GKSISPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHI----ARARLQDLHAR 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|89099048|ref|ZP_01171927.1| tyrosine recombinase [Bacillus sp. NRRL B-14911]
 gi|89086178|gb|EAR65300.1| tyrosine recombinase [Bacillus sp. NRRL B-14911]
          Length = 297

 Score =  274 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 91/310 (29%), Positives = 162/310 (52%), Gaps = 15/310 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +    ++++  L IE+GL+  T+ SYE D + +L F+     +   + ++ ++    I  
Sbjct: 1   MEDRLKDFVHFLLIEKGLANNTIVSYERDLKNYLKFIV----KSEGLASLNEVQRVHIVQ 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+ K + Q    ++L R ++ I++F ++L + K+      +++ + ++  SLP+ L+  +
Sbjct: 57  FLKKLKEQGKSAKTLARHIASIRAFHQFLLREKVCENDPSVHIESPQQERSLPKVLSMAE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
             TL++     +  ++     R+ A+L LLY  G+R+SE + L   ++      +R  GK
Sbjct: 117 VETLLE-----SPSDSSHYSLRDKAMLELLYATGIRVSELIGLQIGDVHLTMGFVRCIGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G+K RI+P+  +  +AI  Y       F         LF    G+ L    F + +++L 
Sbjct: 172 GNKERIIPIGKTASEAIERYLLHGRPNFVSKSRRDDTLFLNHHGRQLTRQGFWKILKKLA 231

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        + 
Sbjct: 232 GDAGIEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----LK 287

Query: 312 EIYDQTHPSI 321
           ++Y + HP  
Sbjct: 288 DVYSKFHPRA 297


>gi|323489648|ref|ZP_08094875.1| tyrosine recombinase xerD [Planococcus donghaensis MPA1U2]
 gi|323396779|gb|EGA89598.1| tyrosine recombinase xerD [Planococcus donghaensis MPA1U2]
          Length = 300

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 91/308 (29%), Positives = 155/308 (50%), Gaps = 15/308 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
               +++  L +ER L+  TL SYE D + +L +L    +    +++++++    I   +
Sbjct: 6   DALDDYIHFLRVERQLADNTLSSYERDLKVYLQYLKEVEQ----LESLKKVERVHILNHL 61

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
              +      R++ R +S I+SF +++ + +I      +++   +    LP  L+ ++  
Sbjct: 62  RHLKETTKTPRTVARHISSIRSFHQFMIRERIVETDPTVHLEMPQMDKKLPNILSIEEVD 121

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+           K    R+ A+L LLY  G+R+SE ++L  +++      +R  GKG 
Sbjct: 122 ALI-----QVPATNKANGLRDQAMLELLYASGMRVSECINLDIEDVHLTMGFVRCTGKGG 176

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K RI+PL  S   +   Y +    DL  +      LF   RGK L    F + ++Q  + 
Sbjct: 177 KERIIPLGKSALTSCQTYLEQGRIDLVKSGEKTDALFINQRGKRLTRQGFWKLLKQHAQK 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    T HTLRHSFATHLL NG D+R++Q +LGH  +STTQIYT+V+       + ++
Sbjct: 237 AGIQKELTPHTLRHSFATHLLENGADIRAVQEMLGHADISTTQIYTHVSKTR----LKDV 292

Query: 314 YDQTHPSI 321
           Y Q HP  
Sbjct: 293 YSQFHPRA 300


>gi|254429866|ref|ZP_05043573.1| tyrosine recombinase XerD [Alcanivorax sp. DG881]
 gi|196196035|gb|EDX90994.1| tyrosine recombinase XerD [Alcanivorax sp. DG881]
          Length = 312

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 99/310 (31%), Positives = 151/310 (48%), Gaps = 20/310 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +   +WL    +E+GLS+ +L +Y  D  Q  ++L           T+      ++  F+
Sbjct: 15  RLIDSWLDQQWLEKGLSEHSLSNYRRDISQLAVWLQHQQ------ATLLACERYQLLEFL 68

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           + R  Q +  RS+ R LS +KSF ++LK+     E   L +   K    LP+ L+E    
Sbjct: 69  AARHQQGLSARSVARQLSAVKSFYRWLKREGRIAEDPALLIERPKLGRPLPKTLSEADVE 128

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+          +  +  R+ A+L +LY  GLR++E ++LT   I   Q  +R+ GKGD
Sbjct: 129 ALL-----AAPDLSTPLGLRDRAMLEVLYATGLRVTELVTLTQSQINPRQGLIRVIGKGD 183

Query: 196 KIRIVPLLPSVRKAILEYYDLCPF-----DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           K R+VPL       +  Y           D     Q  LF   RG  +    F   I+QL
Sbjct: 184 KERLVPLGEEALHWLARYAQEGRPQLLAADQQGGNQELLFPSRRGTCMTRQTFWHRIKQL 243

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V  +     +
Sbjct: 244 AVVAGVQKKLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQQR----L 299

Query: 311 MEIYDQTHPS 320
            ++Y + HP 
Sbjct: 300 QDVYQKHHPR 309


>gi|313500307|gb|ADR61673.1| XerD [Pseudomonas putida BIRD-1]
          Length = 298

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 97/304 (31%), Positives = 146/304 (48%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GLS  T  SY  D   F  +L  ++       ++       I   ++ 
Sbjct: 9   IDQFLDALWLEKGLSDNTRVSYRSDLALFNGWLQEHS------VSLPDAGRDLILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  Q    RS  R LSG++ F +YL + K+      L +   +    LP++L+E     L
Sbjct: 63  RLDQGYKPRSTARFLSGLRGFFRYLLREKLVAIDPTLQVDMPQLGKPLPKSLSEADVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +           + I  R+ A+L +LY CGLR++E +SLT   +   Q  LR+ GKG K 
Sbjct: 123 L-----QAPDLGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y      +L N      LF   RG+ +    F   I+   R  G+
Sbjct: 178 RLVPMGEEAVVWLDRYQRDGRAELLNGRPSDVLFPSQRGEQMTRQTFWHRIKHHARVAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + +++ Q
Sbjct: 238 DKPLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR----LQQLHAQ 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|296332285|ref|ZP_06874747.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674986|ref|YP_003866658.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296150599|gb|EFG91486.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413230|gb|ADM38349.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 296

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 94/309 (30%), Positives = 159/309 (51%), Gaps = 14/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + ++++  + +ERGLS+ T+ SYE D + + ++L     E + +     ++   I  
Sbjct: 1   MKDQIKDFIHYVMVERGLSQNTVVSYERDLKSYSLYLT----ETLHVTDWNHVTRIHIIQ 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++   +      ++  R L+ I+SF ++L + K+T +   +++   K   +LP+ L   +
Sbjct: 57  YLKHLKDSGKSGKTSARHLASIRSFHQFLLREKVTDKDPSVHIETQKTERALPKVLALNE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D     T   T     R+ A+L LLY  G+R+SE + L   ++      +R  GK
Sbjct: 117 VERLLD-----TPKLTSPFGYRDKAMLELLYATGIRVSEMIELKTADVHLSMGFVRCFGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K RIVP+  +   AI EY        L  N+   LF    GK ++   F + ++++  
Sbjct: 172 GRKERIVPIGEAAASAIEEYITKARGKLLKNNVSDALFLNHHGKQISRQGFWKNLKKIAL 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    T HTLRHSFA+HLL NG DLR++Q +LGH  +STTQIYT+V        + +
Sbjct: 232 EAGIKKELTPHTLRHSFASHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----LKD 287

Query: 313 IYDQTHPSI 321
           +Y Q HP  
Sbjct: 288 VYKQFHPRA 296


>gi|293394605|ref|ZP_06638899.1| tyrosine recombinase XerD [Serratia odorifera DSM 4582]
 gi|291422914|gb|EFE96149.1| tyrosine recombinase XerD [Serratia odorifera DSM 4582]
          Length = 299

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 91/306 (29%), Positives = 152/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L +ER L++ TL SY  D +  + +LA +         + Q    +++AF+++
Sbjct: 9   IEQFLDALWLERNLAENTLASYRLDLQALVNWLAQHN------SDLLQAEALDLQAFLAE 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q   L
Sbjct: 63  RVEGGYKASSSARLLSAMRRLFQYLYREKMRADDPTALLASPKLPQRLPKDLSEAQIDAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +           + ++ R+ A+L +LY  GLR+SE + L+  ++   Q  +R+ GKG+K 
Sbjct: 123 L-----QAPCVDQPLELRDKAMLEVLYATGLRVSELVGLSISDVSLRQGVVRVIGKGNKE 177

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       I  Y     P+ +N      LF   R + +    F   I+      G+
Sbjct: 178 RLVPLGEEAVYWIENYLEHGRPWLVNGQTIDVLFPSQRCQQMTRQTFWHRIKHYAILAGI 237

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 238 DSERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQ 293

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 294 QHHPRA 299


>gi|325674273|ref|ZP_08153962.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707]
 gi|325554953|gb|EGD24626.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707]
          Length = 309

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 88/317 (27%), Positives = 147/317 (46%), Gaps = 17/317 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL     ++L +L +ERG ++ TL SY  D  ++  FL     E      +R ++ T++ 
Sbjct: 3   ELGGLIDSYLDHLAVERGAARNTLTSYRRDLDRYARFL-----EARGTDDVRSVTETDVS 57

Query: 73  AFISKRRTQK-------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
            F+   R          +   S  R+L  ++   ++     +T+      ++       L
Sbjct: 58  EFVVALRKGDPAEGVVALAPSSAARALIAVRGLHRFAAAEGVTSGDVARAVKPPTPGRRL 117

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P++L     L +++      S +      R+ A+L LLY  G RISEA+ L   ++    
Sbjct: 118 PKSLPLDDVLAILEASGGDGSADNPRT-LRDRALLELLYSTGARISEAVGLDVDDLDTQS 176

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            ++ ++GKG K R+VP+      AI  Y       L++     LF  +RG  L+     +
Sbjct: 177 RSVLLRGKGGKERVVPVGRPAITAIDNYLVRGRPALSVRGGPALFLNVRGGRLSRQSAWQ 236

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +       G+ ++ + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V    
Sbjct: 237 VLHTAAEKAGIAVAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVT--- 293

Query: 306 GGDWMMEIYDQTHPSIT 322
               + E++ Q HP   
Sbjct: 294 -VGALREVWAQAHPRAR 309


>gi|226311968|ref|YP_002771862.1| tyrosine recombinase [Brevibacillus brevis NBRC 100599]
 gi|226094916|dbj|BAH43358.1| probable tyrosine recombinase [Brevibacillus brevis NBRC 100599]
          Length = 295

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 153/305 (50%), Gaps = 15/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              ++  L +E+GLS+ TL+SY+ D   F  +L     ++  +  +   + T I  ++  
Sbjct: 5   IDQFIHFLTVEKGLSRNTLESYQRDMVAFTSYL-----QEQGVTRVEDSTRTHIIGYLLV 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R +     +L R+++ I++F ++L + K   +   +++   K    LP+ L+ ++   L
Sbjct: 60  LREKGRATATLSRNMASIRAFYQFLIRDKYIDKDPSIHLETPKIEKRLPKVLSVEEVERL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++     +         R+ A+L LLY  G+R+SE ++L   ++  D   ++  GKG K 
Sbjct: 120 LE-----SPPVNHPAGLRDKAMLELLYATGIRVSELVNLDSADVNLDMGFVKCLGKGSKE 174

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RI+PL     + +  Y     P  +       LF    GK +    F + I++  +   +
Sbjct: 175 RIIPLGSVAIQMVRHYLQAGRPKMVKGTGDTALFLNHLGKQITRQGFWKIIKRYAQKSNI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT+V        + +IY +
Sbjct: 235 RAEITPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHVT----RTRIKDIYAK 290

Query: 317 THPSI 321
           THP  
Sbjct: 291 THPRA 295


>gi|283782472|ref|YP_003373227.1| tyrosine recombinase XerC [Pirellula staleyi DSM 6068]
 gi|283440925|gb|ADB19367.1| tyrosine recombinase XerC [Pirellula staleyi DSM 6068]
          Length = 323

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 89/322 (27%), Positives = 150/322 (46%), Gaps = 23/322 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +      +L+ L +ERG ++LT +SY  D      +L      +       +++  ++R 
Sbjct: 1   MHAAIGQFLRYLVVERGAAELTSKSYREDLTSLADYLTQAYGREPKP---SEITPLDLRG 57

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++S          S+ R L+ +++F K+ ++  +   +    +RN +K   LP  L   +
Sbjct: 58  YVSALHEAGYAKTSIARRLASLRTFYKFAQREGMADSNPAKPLRNPRKDRKLPHFLAGDE 117

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++               R+ A+L  LY  GLR+SE + +  +++  D+  +RI+GK
Sbjct: 118 LGKLLE-----APPADDPAGLRDRAMLETLYSAGLRVSELVGMNDEDLDLDEGVVRIRGK 172

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-----------NLNIQLPLFRGIRGKPLNPGV 242
           G K R+ PL     +AI ++                         P+F    GK L    
Sbjct: 173 GSKERLAPLGSFALRAIKKWLAHRKLASISVSSTRKSASKAGHGTPVFTNKFGKRLTTRS 232

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             R + +  +  GL L TT HTLRH+FATHLL  G D+RS+Q +LGH  L TTQIYT+V+
Sbjct: 233 VARMLEKYLKLTGLDLRTTPHTLRHTFATHLLDRGADIRSVQELLGHKSLVTTQIYTHVS 292

Query: 303 SKNGGDWMMEIYDQTHPSITQK 324
           +      +  +Y++ HP    K
Sbjct: 293 TA----ALKAVYERAHPRARNK 310


>gi|291484781|dbj|BAI85856.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           natto BEST195]
          Length = 296

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 95/309 (30%), Positives = 159/309 (51%), Gaps = 14/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + ++++  + +ERGLS+ T+ SYE D + + ++L     E + +     ++   I  
Sbjct: 1   MKDQIKDFIHYVMVERGLSQNTIVSYERDLKSYSLYLT----ETLHVTDWNHVTRIHIIQ 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++   +      ++  R L+ I+SF ++L + K+T +   +++   K   +LP+ L   +
Sbjct: 57  YLKHLKDSGKSGKTSARHLASIRSFHQFLLREKVTDKDPSVHIETQKTERALPKVLALNE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D     T   T     R+ A+L LLY  G+R+SE + L   ++      +R  GK
Sbjct: 117 VERLLD-----TPKLTSPFGYRDKAMLELLYATGIRVSEMIELKTTDVHLSMGFVRCFGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K RIVP+  +   AI EY        L  N+   LF    GK ++   F + ++++  
Sbjct: 172 GRKERIVPIGEAAASAIEEYMTKARGKLLKNNVSDALFLNHHGKQISRQGFWKNLKKIAL 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        + +
Sbjct: 232 EAGIKKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----LKD 287

Query: 313 IYDQTHPSI 321
           +Y Q HP  
Sbjct: 288 VYKQFHPRA 296


>gi|28198608|ref|NP_778922.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa
           Temecula1]
 gi|182681291|ref|YP_001829451.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa M23]
 gi|73920479|sp|Q87DI2|XERC_XYLFT RecName: Full=Tyrosine recombinase xerC
 gi|254799363|sp|B2IA18|XERC_XYLF2 RecName: Full=Tyrosine recombinase xerC
 gi|28056692|gb|AAO28571.1| site-specific recombinase [Xylella fastidiosa Temecula1]
 gi|182631401|gb|ACB92177.1| tyrosine recombinase XerC [Xylella fastidiosa M23]
 gi|307579742|gb|ADN63711.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 294

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 90/313 (28%), Positives = 153/313 (48%), Gaps = 19/313 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +  +++   L +ERG+S  TL +Y  D    + +       +  +  +  L   +++A
Sbjct: 1   MSRLVEDFFAFLHVERGMSSHTLDAYRRDIGALIAW-----GGQQAVGEVVALDRAQLQA 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+S    + +  +SL+R LS  + F  +L KR     +    +R  K    LPR L+  +
Sbjct: 56  FVSAEHRRGLSAKSLQRRLSACRGFYTWLVKRGHIAVNPAAGLRAPKALRKLPRILDADE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           A++ V             +  R+ A+L L Y  GLR+SE   L    +  D   + + GK
Sbjct: 116 AVSFVQIP------TDTPLGLRDRALLELFYSSGLRLSELCGLRWDGLDLDAGLVSVLGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G + R+VP+      A+ E+            Q P+F G  G P++    Q  I+QL + 
Sbjct: 170 GSRQRVVPVGSYALSALREW----CASSGGGAQQPVFPGRYGGPISARAVQVRIKQLAQR 225

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+      H LRHSFA+HLL + GDLR +Q +LGH  ++TTQIYT+++ +    ++ ++
Sbjct: 226 QGMAKHVHPHMLRHSFASHLLESSGDLRGVQELLGHADITTTQIYTHLDFQ----YLSKV 281

Query: 314 YDQTHPSITQKDK 326
           YD  HP   +K +
Sbjct: 282 YDAAHPRARRKAR 294


>gi|229162767|ref|ZP_04290724.1| Tyrosine recombinase xerC [Bacillus cereus R309803]
 gi|228620649|gb|EEK77518.1| Tyrosine recombinase xerC [Bacillus cereus R309803]
          Length = 302

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 89/307 (28%), Positives = 157/307 (51%), Gaps = 17/307 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R +++ 
Sbjct: 10  LQLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYLTT 64

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +K+  +S+ R +S ++S  ++L +    T++        KK  S+P+ L  ++   L
Sbjct: 65  LHDEKLARKSVARKVSSLRSLYRFLMREGYRTDNPFALASLPKKELSIPKFLYAEELEEL 124

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            +      S     +  RN A+L L+YG G+R+SE ++L   +I     T+ + GKG K 
Sbjct: 125 FE-----VSDTETPLGQRNQALLELMYGTGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYL 254
           R +P     + A++ Y +     L    +     +F   +G PL     +  + +L +  
Sbjct: 180 RYIPFGSYAQDALITYIENGRKQLANKTEEHSHMVFLNAKGTPLTSRGVRYVLNELIKKA 239

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +     +  +Y
Sbjct: 240 SLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER----LRSVY 295

Query: 315 DQTHPSI 321
            + HP  
Sbjct: 296 MKHHPRA 302


>gi|116513910|ref|YP_812816.1| integrase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093225|gb|ABJ58378.1| tyrosine recombinase XerD subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|325125576|gb|ADY84906.1| Integrase-recombinase [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 298

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 100/311 (32%), Positives = 162/311 (52%), Gaps = 17/311 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L ++  ++L+  +IERGLS  T+ +Y+ D    L FLAF  EE++    +  +   EI 
Sbjct: 3   KLAEQINDYLRYSQIERGLSPNTIAAYQQDL---LEFLAFVKEEQMPAWPLEAV---EID 56

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           AF++K R     + S+ R +S +  F ++L ++++     +  +   K+   +P AL E 
Sbjct: 57  AFLAKERDLGKANSSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEA 116

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L++         T  +  R+  +L LLY  G+R+SEA++L   ++  +   +++ G
Sbjct: 117 EVGKLLEQ-----PDLTTDLGIRDRVLLELLYATGMRVSEAVNLQLADVHANLQLIKVLG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           KG K R++P+       I  Y  +    L         LF   RG  L      + I++ 
Sbjct: 172 KGSKERLIPVSALALDWIKRYLPVRDQQLLKRGKSSDYLFLNSRGGQLTRQAVWQKIKKY 231

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  G+    T HTLRHSFATHLL +G DLR +Q ILGH  +STTQIYTN+  K+  D  
Sbjct: 232 CQQAGIAKDVTPHTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYTNLTQKHILD-- 289

Query: 311 MEIYDQTHPSI 321
             +Y +THP I
Sbjct: 290 --VYQKTHPRI 298


>gi|84683488|ref|ZP_01011391.1| tyrosine recombinase XerC [Maritimibacter alkaliphilus HTCC2654]
 gi|84668231|gb|EAQ14698.1| tyrosine recombinase XerC [Rhodobacterales bacterium HTCC2654]
          Length = 313

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 123/321 (38%), Positives = 183/321 (57%), Gaps = 11/321 (3%)

Query: 6   LPE--IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           +P+  ++S         WL +L    G +  T+++Y  D   FL FL+ +         +
Sbjct: 1   MPDGIVISDGARDALSGWLDHLRALDGAAANTIEAYRKDVVSFLAFLSAHHGTSHGRTAL 60

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
             ++ +++RA+++  R   +  RSL R+LS +K F ++L  R     S +L+ R  K + 
Sbjct: 61  ASVTISDMRAWMASERAGGLSARSLARALSAVKGFYRWLSDRDGFDASTVLSTRAPKFTA 120

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            LPR ++++ A  ++    +       WI AR++A++ LLYGCGLRISEAL LT +    
Sbjct: 121 KLPRPVSQEAAEEVISTTAIQARDG--WIGARDAAVVTLLYGCGLRISEALGLTGRAHPL 178

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
               LRI GKG K R+VP+LP+ R A+  Y  LCP+ +  +   PLF G RGK L P   
Sbjct: 179 -PDVLRIVGKGGKERLVPVLPAARDAVASYVRLCPYPVTDDT--PLFYGARGKALGPRTV 235

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           Q+ +   R  LGLP + T H +RHSFATHLL+ GGDLR+IQ +LGH  LSTTQ YT V++
Sbjct: 236 QKAMESARLQLGLPATATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTAVDT 295

Query: 304 KNGGDWMMEIYDQTHPSITQK 324
           +     +ME+YD+ HP    K
Sbjct: 296 QR----LMEVYDRAHPRALGK 312


>gi|94264969|ref|ZP_01288740.1| Tyrosine recombinase XerC [delta proteobacterium MLMS-1]
 gi|93454572|gb|EAT04850.1| Tyrosine recombinase XerC [delta proteobacterium MLMS-1]
          Length = 339

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 98/341 (28%), Positives = 146/341 (42%), Gaps = 45/341 (13%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT--------------------- 54
           +    +L+ L +E+G S  T+ SY+ D R+F+      +                     
Sbjct: 7   RHIDAFLRWLRVEKGYSGHTVASYQRDLREFVASAGRRSAPAPTAVGRKGRGRGRAAAAP 66

Query: 55  ---EEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111
              E+      + QL  T +RAF+     +     S+ R LS ++SF ++L+K  I  + 
Sbjct: 67  LPAEDPAAELDVAQLDATRVRAFVYSLHGRNKS-SSVARKLSALRSFFRFLRKNGIINDD 125

Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
               +   K    LP  L+  +  +L++              AR+ AIL LLY  GLR+S
Sbjct: 126 PAAAIAAPKGEGYLPVVLSVDEVFSLLEM-----PGAGDRFAARDRAILELLYATGLRVS 180

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---------- 221
           E   L    +      +R+ GKG+K R+VP+  +   AI  Y       L          
Sbjct: 181 ELAGLDLAQLDLADGMVRVVGKGNKERLVPMGTAAVAAIEAYLPQRQVLLRQTAGQQKEG 240

Query: 222 -NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
                  PL    RG  L     +R ++      G+    + H LRHSFATHLL  G DL
Sbjct: 241 KKARGADPLLVNSRGGRLTSRSIERLVKMYAERAGIAARVSPHALRHSFATHLLEMGADL 300

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           R +Q +LGH  LSTTQ YT++N     D +  +YDQ HP  
Sbjct: 301 RVVQELLGHASLSTTQRYTHLN----LDHLTAVYDQAHPLA 337


>gi|283852866|ref|ZP_06370128.1| integrase family protein [Desulfovibrio sp. FW1012B]
 gi|283571776|gb|EFC19774.1| integrase family protein [Desulfovibrio sp. FW1012B]
          Length = 319

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 103/325 (31%), Positives = 160/325 (49%), Gaps = 7/325 (2%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M   +        L +    +L +L +E+G S  TL +Y  D  QF   LA      +T+
Sbjct: 1   MSSTSGKAEARKPLPEPAAAYLDHLRVEKGYSPATLAAYAEDLAQFEESLA---GRGLTL 57

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
                ++    R F+++   +++   S+ R LS ++    +L+++K  T   +  ++N K
Sbjct: 58  AAPGAVTLEAARGFLAELHRRRVAKSSMGRKLSALRGLFTFLRRKKRVTGDPLAGLKNPK 117

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                P+ALN  +A+ LV       + +      R+ A+  LLYG GLR+SEA++L   +
Sbjct: 118 TDKRQPKALNVDEAVALVTPGPESPAADGSREACRDLALAELLYGSGLRVSEAMTLDVDD 177

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           +   Q  +R+ GKG K R+ PL  + R  + EY            +   F G RG  L+ 
Sbjct: 178 LDLSQGIVRVMGKGGKERLAPLSDAARVRLGEYARRRAEFAPAPREPAFFLGARGGRLDR 237

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               R I  L R  GL      H LRHSFATHLL +G D+RS+Q +LGH RLSTTQ YT+
Sbjct: 238 RQAARIIDALARGAGLARHAHPHMLRHSFATHLLESGADMRSVQELLGHARLSTTQRYTH 297

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKD 325
           ++       +M++YDQ HP   +  
Sbjct: 298 LDLAR----LMQVYDQAHPRSDESK 318


>gi|47568147|ref|ZP_00238851.1| integrase/recombinase XerD [Bacillus cereus G9241]
 gi|222097540|ref|YP_002531597.1| site-specific tyrosine recombinase xerd [Bacillus cereus Q1]
 gi|47555137|gb|EAL13484.1| integrase/recombinase XerD [Bacillus cereus G9241]
 gi|221241598|gb|ACM14308.1| integrase/recombinase (tyrosine recombinase) [Bacillus cereus Q1]
          Length = 285

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 90/298 (30%), Positives = 155/298 (52%), Gaps = 14/298 (4%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           + +E+GL+K T+ SYE D + ++ +L    + K    +  +++   I  F+   +     
Sbjct: 1   MVVEKGLAKNTVVSYERDLKSYVKYLQNVEQAK----SFHEVTRLHIVNFLQHLKENGKS 56

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            ++L R ++ I+SF ++L + +       +++   +    LP+ L+  +   L+      
Sbjct: 57  SKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEVEALL-----Q 111

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           T   T     R+ A+L LLY  GLR+SE ++L  +++      +R  GKG+K RI+PL  
Sbjct: 112 TPKMTSAFGVRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGS 171

Query: 205 SVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              +AI +Y +    +L    +   LF    G  L+   F + +++L +   +    T H
Sbjct: 172 LATEAIQKYIEKGRRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPH 231

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           TLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + ++Y Q HP  
Sbjct: 232 TLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKDVYKQFHPRA 285


>gi|227551150|ref|ZP_03981199.1| site-specific DNA tyrosine recombinase [Enterococcus faecium
           TX1330]
 gi|227179712|gb|EEI60684.1| site-specific DNA tyrosine recombinase [Enterococcus faecium
           TX1330]
          Length = 300

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 99/309 (32%), Positives = 162/309 (52%), Gaps = 15/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++  ++L  L IERGLS  T QSYE D  Q+L FL     E+  + + + +    +  
Sbjct: 6   MKEQINDYLHYLNIERGLSANTRQSYERDLEQYLHFL-----EEQKVASWQDVDRFLVIR 60

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+ K   +K    ++ R +S ++ F ++L++ ++T    + ++   KK+  LP  L   +
Sbjct: 61  FLEKLHEEKKATATVTRMISSLRRFHQFLRQERVTDHDPMQHIDTPKKAQKLPSTLTLAE 120

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++         TK +  R+ AIL ++Y  G+R+SE + L   ++      ++  GK
Sbjct: 121 VEKLIE-----APDTTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGK 175

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           GDK RI+PL     + +  Y D     L  +  ++ +F    GK L+     + ++QL R
Sbjct: 176 GDKERIIPLGDYAIQWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVR 235

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT++  K     M +
Sbjct: 236 EAGIYKEVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR----MTD 291

Query: 313 IYDQTHPSI 321
           +Y Q  P  
Sbjct: 292 VYKQHFPRA 300


>gi|152971840|ref|YP_001336949.1| site-specific tyrosine recombinase XerD [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238896434|ref|YP_002921172.1| site-specific tyrosine recombinase XerD [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262042535|ref|ZP_06015692.1| tyrosine recombinase XerD [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330010972|ref|ZP_08306937.1| tyrosine recombinase XerD [Klebsiella sp. MS 92-3]
 gi|150956689|gb|ABR78719.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238548754|dbj|BAH65105.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259040095|gb|EEW41209.1| tyrosine recombinase XerD [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328534349|gb|EGF60959.1| tyrosine recombinase XerD [Klebsiella sp. MS 92-3]
          Length = 298

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 93/309 (30%), Positives = 154/309 (49%), Gaps = 17/309 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L  L +ER L++ TL +Y  D    + +L           ++  +   +++A 
Sbjct: 5   LALIEQFLDALWLERNLAENTLSAYRRDLTMLVEWLHHRG------LSLASVGSDDLQAL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R++      S  R LS ++ F ++L + KI  +     + + K    LP+ L+E Q 
Sbjct: 59  LAERQSGGYKATSTARLLSAVRRFFQHLYREKIRPDDPSALLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+   L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  LR+ GKG
Sbjct: 119 ERLLQAPLVEQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVLRVVGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y     P+ LN      LF   R + +    F   I+     
Sbjct: 174 NKERLVPLGEEAVLWVENYLEYGRPWLLNGVASDVLFPSQRAQQMTRQTFWHRIKHYAVL 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHPSI 321
           ++ Q HP  
Sbjct: 290 LHQQHHPRA 298


>gi|295428073|ref|ZP_06820705.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|295128431|gb|EFG58065.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           EMRSA16]
          Length = 297

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 96/305 (31%), Positives = 158/305 (51%), Gaps = 15/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+ ++IE+GLS  T+ +Y  D +++  ++  +      I  I  +    I+  +  
Sbjct: 7   IEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHH-----ISHIDFIDRQLIQECLGH 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q    +S+ R +S I+SF ++  + K   +   + + + K    LP  LN  + L L
Sbjct: 62  LIDQGQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLAL 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++     T    K    R+  +L LLY  G+R+SE + L  +N+      +R+ GKGDK 
Sbjct: 122 LE-----TPDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKE 176

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVPL  +V + +  Y   + P  L   +   LF  + GKPL+     + I+Q      +
Sbjct: 177 RIVPLGDAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANI 236

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y+Q
Sbjct: 237 KKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYNQ 292

Query: 317 THPSI 321
            HP  
Sbjct: 293 FHPRA 297


>gi|257887731|ref|ZP_05667384.1| phage integrase [Enterococcus faecium 1,141,733]
 gi|257896226|ref|ZP_05675879.1| phage integrase [Enterococcus faecium Com12]
 gi|293379533|ref|ZP_06625675.1| tyrosine recombinase XerD [Enterococcus faecium PC4.1]
 gi|257823785|gb|EEV50717.1| phage integrase [Enterococcus faecium 1,141,733]
 gi|257832791|gb|EEV59212.1| phage integrase [Enterococcus faecium Com12]
 gi|292641842|gb|EFF60010.1| tyrosine recombinase XerD [Enterococcus faecium PC4.1]
          Length = 295

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 99/309 (32%), Positives = 162/309 (52%), Gaps = 15/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++  ++L  L IERGLS  T QSYE D  Q+L FL     E+  + + + +    +  
Sbjct: 1   MKEQINDYLHYLNIERGLSANTRQSYERDLEQYLHFL-----EEQKVASWQDVDRFLVIR 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+ K   +K    ++ R +S ++ F ++L++ ++T    + ++   KK+  LP  L   +
Sbjct: 56  FLEKLHEEKKATATVTRMISSLRRFHQFLRQERVTDHDPMQHIDTPKKAQKLPSTLTLAE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++         TK +  R+ AIL ++Y  G+R+SE + L   ++      ++  GK
Sbjct: 116 VEKLIE-----APDTTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           GDK RI+PL     + +  Y D     L  +  ++ +F    GK L+     + ++QL R
Sbjct: 171 GDKERIIPLGDYAIQWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVR 230

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT++  K     M +
Sbjct: 231 EAGIYKEVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR----MTD 286

Query: 313 IYDQTHPSI 321
           +Y Q  P  
Sbjct: 287 VYKQHFPRA 295


>gi|218778680|ref|YP_002429998.1| tyrosine recombinase XerD [Desulfatibacillum alkenivorans AK-01]
 gi|218760064|gb|ACL02530.1| tyrosine recombinase XerD [Desulfatibacillum alkenivorans AK-01]
          Length = 298

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 95/304 (31%), Positives = 153/304 (50%), Gaps = 15/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              ++  L +E+GLS+ TL++Y  D   F  FL     +K  I  + +    +I   +  
Sbjct: 8   IDQYMNYLLVEKGLSQNTLEAYGKDLGVFTDFL-----QKRKIDDLTKADTPDIVQHLID 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R Q +G R+  R L  I+    +L++ KI   +    +   K    LP  ++  +   L
Sbjct: 63  LRAQGLGARTRARHLVAIRGLFSFLEQEKIIKHNPAKLVDLPKTGLHLPDVISVVEIEQL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++       +E   + AR+ A++ L Y  GLR+SE +++  Q+I  D   +R+ GKG K 
Sbjct: 123 LE-----APNEMDILGARDRAMMELAYASGLRVSELINVRVQDIHLDAGFVRVMGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVP+    R+ I  Y     P  L       LF    G+P+    F + +++     G+
Sbjct: 178 RIVPMGRQAREKIKTYMDHDRPILLKGKPGEYLFVVRGGRPMTRQAFWKLLKKYALKAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + T HTLRHSFA+HLL  G DLR +Q +LGH  +STTQIYT+V  +     ++EI+++
Sbjct: 238 AKNITPHTLRHSFASHLLEGGADLRVVQEMLGHVDISTTQIYTHVARER----LIEIHER 293

Query: 317 THPS 320
            HP 
Sbjct: 294 YHPR 297


>gi|83592556|ref|YP_426308.1| site-specific tyrosine recombinase XerC [Rhodospirillum rubrum ATCC
           11170]
 gi|83575470|gb|ABC22021.1| tyrosine recombinase XerC subunit [Rhodospirillum rubrum ATCC
           11170]
          Length = 330

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 124/312 (39%), Positives = 181/312 (58%), Gaps = 9/312 (2%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           + +L      WL  L+ ER  S+ TL +Y  D   FL FL  Y  E+  + T+  L   +
Sbjct: 28  ASDLRPSLVAWLGWLQGERRASRHTLDAYGRDLAAFLTFLRDYRGEEPGLATLASLGPAD 87

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
            RA+++ R TQ +   S+ R+LS +++  ++L +  +     I  +R+ ++  ++P+AL+
Sbjct: 88  FRAYMAARLTQGLSRPSMARALSTLRNLFRWLDREGVLRNGAIATIRSPRQPQAVPKALS 147

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           E +AL  +   +     +  W+  R+ A+  LLYGCGLR+ EAL L   + +     +RI
Sbjct: 148 ESEALDAL--SVASDLQDDPWLAKRDLALFTLLYGCGLRLGEALDLDRGD-LPSGEVMRI 204

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG K R+VPLLP V +A+ +Y   CPF        PLF G RGK LNPGV QR +R+L
Sbjct: 205 TGKGRKERLVPLLPVVVEALADYLAACPF--AGGPDDPLFLGSRGKRLNPGVVQRQMRRL 262

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           R +LGLP + T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ YT V+       +
Sbjct: 263 RGFLGLPETATPHALRHSFATHLLAQGGDLRTIQELLGHASLSTTQRYTKVD----AGTL 318

Query: 311 MEIYDQTHPSIT 322
           + ++  THP   
Sbjct: 319 VGLHGATHPRAR 330


>gi|331701395|ref|YP_004398354.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929]
 gi|329128738|gb|AEB73291.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929]
          Length = 296

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 95/310 (30%), Positives = 154/310 (49%), Gaps = 17/310 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++ +++L  L +ERGLS  T++SY  D ++   F   +       ++I  +    I  
Sbjct: 2   MHEQIEDYLHYLRVERGLSDNTIKSYRQDLQEAGAFFDKH------AKSIADIDQFVILD 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++   + Q     ++ R +S ++ F +YL +  +  +  +L + + KK+ +LP  L   Q
Sbjct: 56  YLETLQRQHKARNTVIRVVSTLRRFFQYLVQFHVIVDDPMLKVDSPKKAQTLPDVLTVAQ 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                 N LL      K +  R+ AIL  LY  GLR+SE ++L   ++    + L+  GK
Sbjct: 116 V-----NQLLSMPDTHKKLGLRDRAILETLYATGLRVSELVNLKLGDLHLPMNLLQTIGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GDK RI+P+       + +Y       L         LF    G  L      + I++  
Sbjct: 171 GDKERIIPISDVAIDWLNQYIQSTRVQLLSGRPNSEFLFLNAHGHQLTRQAIWQMIKKYV 230

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+    T HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT+V+ K+    + 
Sbjct: 231 NQAGIKRHVTPHTLRHSFATHLLENGADLRIVQELLGHSDISTTQIYTHVSHKH----LT 286

Query: 312 EIYDQTHPSI 321
           E+Y++ HP  
Sbjct: 287 EVYNKYHPRA 296


>gi|330504633|ref|YP_004381502.1| site-specific tyrosine recombinase XerD [Pseudomonas mendocina
           NK-01]
 gi|328918919|gb|AEB59750.1| site-specific tyrosine recombinase XerD [Pseudomonas mendocina
           NK-01]
          Length = 313

 Score =  273 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 96/304 (31%), Positives = 147/304 (48%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+   +E+GLS  T  +Y  D   F  +L            ++ +    I   ++ 
Sbjct: 24  IERFLEAQWLEKGLSAHTQAAYRSDLEHFNAWLDARG------LALQHIGRDAILDHLAW 77

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  Q    RS  R LSG++ F ++L +  + +E   L +   +    LP++L+E     L
Sbjct: 78  RLEQGYQARSTARFLSGVRGFYRFLLREMLISEDPTLQVELPQIGRPLPKSLSEADVEAL 137

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +             I  R+ A+L +LY CGLR+SE + LT + +   Q  LR+ GKG K 
Sbjct: 138 L-----QAPDLDDPIGLRDRAMLEVLYACGLRVSELVGLTLEQVNLRQGVLRVFGKGSKE 192

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       I  Y     P  L       LF  +RG+ +    F   I+   R  G+
Sbjct: 193 RLVPLGEEAIAWIERYMREARPLLLGGKPSDVLFPSLRGEQMTRQTFWHRIKHQARVAGI 252

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT++        + E++ Q
Sbjct: 253 SKALSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHI----ARARLQELHAQ 308

Query: 317 THPS 320
            HP 
Sbjct: 309 HHPR 312


>gi|75674624|ref|YP_317045.1| site-specific tyrosine recombinase XerC [Nitrobacter winogradskyi
           Nb-255]
 gi|123773314|sp|Q3SVJ8|XERC_NITWN RecName: Full=Tyrosine recombinase xerC
 gi|74419494|gb|ABA03693.1| tyrosine recombinase XerC subunit [Nitrobacter winogradskyi Nb-255]
          Length = 321

 Score =  273 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 126/317 (39%), Positives = 185/317 (58%), Gaps = 8/317 (2%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P   + ++ ++   WL +L  ER LS  TL++Y  D RQ L+FL  +  E++T++    L
Sbjct: 11  PACAASDIGQQIVRWLTHLRAERRLSPKTLEAYARDVRQCLMFLGQHWSEQVTLEGFVAL 70

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
              +IR+F++ RR   IG RSL RSL+G++SF ++L++  +     +  +R  K   S+P
Sbjct: 71  EPADIRSFMAARRADDIGGRSLMRSLAGLRSFARFLEREGLGKVGALGAIRAPKVGKSVP 130

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDD 184
           + ++   A    D           WI AR++A++ LLYG GLRISEAL L  ++      
Sbjct: 131 KPIHMSAAKRFADASERAGEDREPWIWARDAAVMALLYGSGLRISEALGLKRRDVPPPGA 190

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
              L + GKG+K R+VP+L +V   I EY  +CP  L    + P+F G RG PL   + Q
Sbjct: 191 GDVLVVTGKGNKTRMVPVLQNVLALIHEYVAMCPHSL--PPEGPIFVGARGGPLRARIIQ 248

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             + ++R  LGLP S T H LRHSFATHLLS GGDLR+IQ +LGH  LSTTQIYT ++S+
Sbjct: 249 LVMARMRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDSE 308

Query: 305 NGGDWMMEIYDQTHPSI 321
                ++++Y   HP  
Sbjct: 309 R----LLDVYRTAHPRA 321


>gi|297205885|ref|ZP_06923280.1| tyrosine recombinase XerD [Lactobacillus jensenii JV-V16]
 gi|297149011|gb|EFH29309.1| tyrosine recombinase XerD [Lactobacillus jensenii JV-V16]
          Length = 300

 Score =  273 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 99/324 (30%), Positives = 160/324 (49%), Gaps = 27/324 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+ NNL          +  ++L+   +ERGLSK T+ SY+ D  QF+ +L     +K  I
Sbjct: 1   MKKNNL---------DQVADFLRFCSLERGLSKNTVDSYQLDLNQFIEYL-----DKEKI 46

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
               +     I ++++K+R +     ++ R ++ ++ F +YL ++ I     ++ +   K
Sbjct: 47  TDWPE-DPLIIDSYLAKQRDEGKKTSTISRGITTLRRFYRYLLRQHILVVDPLIQIDTPK 105

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +   LP AL++K+   L+                R+ AIL LLY  G+R+SE ++L   +
Sbjct: 106 QEKRLPLALSQKEVEQLL-----AQPDIKTTTGLRDRAILELLYATGMRVSELINLKEAD 160

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN---IQLPLFRGIRGKP 237
           +  D   +R+ GKG K R+VP+       + +Y         L        LF   R   
Sbjct: 161 LHTDLKIIRVLGKGSKERLVPVTDFALNWLDKYLKNVRDPALLKKGVACDFLFLNNRAGQ 220

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L      + I++  +   +    T HTLRH+FATHLL NG DLR +Q ILGH  +STTQI
Sbjct: 221 LTRQAVWQSIKKYSKLAKIDKDITPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQI 280

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSI 321
           YTN++ K+  D    +Y +THP  
Sbjct: 281 YTNLSQKHIFD----VYQKTHPRA 300


>gi|89091916|ref|ZP_01164871.1| tyrosine recombinase [Oceanospirillum sp. MED92]
 gi|89083651|gb|EAR62868.1| tyrosine recombinase [Oceanospirillum sp. MED92]
          Length = 299

 Score =  273 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 96/312 (30%), Positives = 165/312 (52%), Gaps = 16/312 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            + + ++  L  ER LS  TL +Y  D  +F  F      E+  I     ++  ++R F 
Sbjct: 4   AQLEQFIHYLANERQLSPHTLDNYTRDINRFFDFT-----EEQGIPAWSSVTAKQVRQFA 58

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++   Q +  +S++RSLS ++SF ++L +  +  ++    ++  K    LP  L+  Q  
Sbjct: 59  AQIHRQGLAGKSIQRSLSALRSFFRFLSREGVVDQNPADAVQAPKSQRKLPETLDVDQID 118

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+D  +         + AR+SAI+ L+Y  GLRISE + L   ++     +LR+ GKG+
Sbjct: 119 RLLDIPVKDA------VSARDSAIMELIYSSGLRISELVGLDIHSLDLADHSLRVLGKGN 172

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R +P+     +AI  + D    +L    +  LF   RGK ++    Q+ +    +YL 
Sbjct: 173 KQRELPIGRKALQAIDRWLDYRH-ELASFDENALFVSSRGKRISVRTVQQRMYHWGKYLE 231

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +      H LRHSFA+H+L + GDLR++Q +LGH  +STTQIYT+++ ++    +M++Y+
Sbjct: 232 VNGHVHPHRLRHSFASHMLESSGDLRAVQELLGHEDISTTQIYTHLDFQH----LMQVYE 287

Query: 316 QTHPSITQKDKK 327
             HP   +K KK
Sbjct: 288 GAHPRAHKKGKK 299


>gi|322831506|ref|YP_004211533.1| tyrosine recombinase XerD [Rahnella sp. Y9602]
 gi|321166707|gb|ADW72406.1| tyrosine recombinase XerD [Rahnella sp. Y9602]
          Length = 319

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L IER L++ TL SY  D +  L +L            +  +S  +++ F+S+R
Sbjct: 30  EQFLDMLWIERNLAENTLSSYRQDLKSLLGWLHHNN------TDLLHVSAEDLQLFLSER 83

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +Y+ +  +  +     + + K    LP+ L+E Q   L+
Sbjct: 84  IEGGYKATSSARLLSAMRRLFQYMNRESVRQDDPTALLSSPKLPQRLPKDLSEAQVDALL 143

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                 +      ++ R+ A+L LLY  GLR+SE + LT  ++   Q  +R+ GKG+K R
Sbjct: 144 -----ASPSVDVPLELRDKAMLELLYATGLRVSELVGLTLSDLSLRQGVVRVIGKGNKER 198

Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+       I  Y+    P+ LN      +F   R + +    F   I+      G+ 
Sbjct: 199 LVPMGEEAVYWIENYFEHGRPWLLNGQSLDVVFPSNRAQQMTRQTFWHRIKHYAILAGID 258

Query: 258 -LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  ++ Q
Sbjct: 259 AERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKLLHQQ 314

Query: 317 THPSI 321
            HP  
Sbjct: 315 HHPRA 319


>gi|49085926|gb|AAT51315.1| PA3738 [synthetic construct]
          Length = 299

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 90/304 (29%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GL+  T ++Y  D +QF  +L            +  +    I   ++ 
Sbjct: 9   IDRFLDALWLEKGLADNTREAYRNDLQQFNAWLDGRGLR------LEGIGRDAILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  Q    RS  R LSG++ F +Y  +  +  E   L +   +    LP++L+E     L
Sbjct: 63  RLEQGYKARSTARFLSGLRGFYRYCLRDGLIAEDPTLQVDLPQLGKPLPKSLSEADVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L        +  R+  +L +LY CGLR+SE + LT + +   Q  +++ GKG K 
Sbjct: 123 -----LAAPEVDDPLGLRDRTMLEVLYACGLRVSELVGLTLEQVNLRQGVVKVFGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       +  Y      DL        LF  +RG+ +    F   I+   +   +
Sbjct: 178 RLVPLGEEAIGWLERYLREARGDLLGGRPSDVLFPSLRGEQMTRQTFWHRIKHHAQVAAI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT++        + +++ +
Sbjct: 238 GTSISPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHI----ARARLQDLHAR 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|138894733|ref|YP_001125186.1| site-specific tyrosine recombinase XerC [Geobacillus
           thermodenitrificans NG80-2]
 gi|134266246|gb|ABO66441.1| Integrase/recombinase (XerC/CodV family) [Geobacillus
           thermodenitrificans NG80-2]
          Length = 309

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 101/323 (31%), Positives = 161/323 (49%), Gaps = 21/323 (6%)

Query: 6   LPEIVSFELLK----ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           + E +  E +K      Q +L+ L+IE+  S+ T+  Y  D  QFL F+      +  I 
Sbjct: 1   MKEPLRGEAMKNAKLALQLFLEYLQIEKNYSQYTIVCYRRDIEQFLQFM-----NEEGID 55

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            + +++Y+++R +++K   Q++  RS+ R +S ++SF K+L +   T E+        KK
Sbjct: 56  ELNEVAYSDVRLYLTKLYGQQLASRSVARKISSLRSFYKFLLREGWTAENPFALAALPKK 115

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              +P  L  ++   L        +     +  RN+A+L LLY  G R+SE   +   ++
Sbjct: 116 EQKIPNFLYREELEALF-----RVNDGNTAVGQRNAALLELLYATGARVSECCHIRLSDL 170

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN---IQLPLFRGIRGKPL 238
               ST+ I GKG+K R VP     R+A+  Y      +L          LF   RG PL
Sbjct: 171 DFAASTVLIHGKGNKQRYVPFGRPAREALERYIGGGRRELVGKLPADHRYLFVNARGNPL 230

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            P   +  + ++     L  + + H LRH+FATHLL+ G DLRS+Q +LGH  LS+TQ+Y
Sbjct: 231 TPRGVRYILDRIVETAALTQNISPHVLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVY 290

Query: 299 TNVNSKNGGDWMMEIYDQTHPSI 321
           T+V      D +  IY Q HP  
Sbjct: 291 THVT----KDRLRCIYLQAHPRA 309


>gi|330686041|gb|EGG97664.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU121]
          Length = 295

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 152/305 (49%), Gaps = 15/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+ ++IE+GLS  T+ +Y  D  ++  +L         I  I  +    I+  +  
Sbjct: 5   IEEYLKFIQIEKGLSVNTIGAYRRDLNKYKEYLTLQK-----ISNIDFVDRQTIQECLGY 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q    +S+ R +S I+SF ++  + K   +   + +   K    LP  L   + + L
Sbjct: 60  LIDQGQSSKSIARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEVDEVIEL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +     +     K    R+  +L LLY  G+R+SE + +  +++      +R+ GKGDK 
Sbjct: 120 L-----NAPDLNKNNGYRDRTMLELLYATGMRVSEVIQIEVEDVNLMMGFVRVFGKGDKE 174

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVPL  +V   +  Y   + P  L   +   LF  + GKPL+     + I+Q      +
Sbjct: 175 RIVPLGDTVIDYLTTYIETVRPQLLKQTVTNVLFLNMHGKPLSRQGIWKMIKQNGLKANI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y+Q
Sbjct: 235 NKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYNQ 290

Query: 317 THPSI 321
            HP  
Sbjct: 291 YHPRA 295


>gi|256828291|ref|YP_003157019.1| integrase family protein [Desulfomicrobium baculatum DSM 4028]
 gi|256577467|gb|ACU88603.1| integrase family protein [Desulfomicrobium baculatum DSM 4028]
          Length = 312

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 99/306 (32%), Positives = 161/306 (52%), Gaps = 12/306 (3%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L+ +RG S  T+ +Y  D     +FL   ++         +++  +I A+++    
Sbjct: 15  FLLYLDAQRGYSPATVAAYGTDLEGAHLFLGRRSK---GFDAPGEVTKADITAYLADLHR 71

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   S+ R LS +++F ++L++RK+  E     + N K     P+ LN  QA+ LV+ 
Sbjct: 72  RGLAKSSVCRKLSALRAFYRFLRQRKMVVEDPCAALANPKLPKVHPKVLNVDQAIHLVE- 130

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
               T         R+ A+L +LYG GLR+SEAL L   ++  DQ  +R+ GKG K R+V
Sbjct: 131 ----TEITLDPEGLRDLALLEVLYGSGLRVSEALGLDFAHVDLDQKLVRVLGKGRKERLV 186

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           PL     + +  Y +          +  +F G RG  L+     R ++++    G P S 
Sbjct: 187 PLTGPAAERLARYIEQRGAFAPAAREQAVFLGKRGGRLSRKQADRIVKEMAVRSGAPCSI 246

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + HTLRHSFA+H+L  G DLRS+Q +LGH R+STTQ YT+++       +M +YD  HP 
Sbjct: 247 SPHTLRHSFASHMLQAGADLRSVQELLGHSRISTTQRYTHLDLAQ----VMRVYDAAHPL 302

Query: 321 ITQKDK 326
             +KD+
Sbjct: 303 AAKKDE 308


>gi|196247646|ref|ZP_03146348.1| tyrosine recombinase XerC [Geobacillus sp. G11MC16]
 gi|196212430|gb|EDY07187.1| tyrosine recombinase XerC [Geobacillus sp. G11MC16]
          Length = 300

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 97/308 (31%), Positives = 154/308 (50%), Gaps = 17/308 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             Q +L+ L+IE+  S+ T+  Y  D  QFL F+      +  I  + +++Y+++R +++
Sbjct: 7   ALQLFLEYLQIEKNYSQYTIVCYRRDIEQFLQFM-----NEEGIDELNEVAYSDVRLYLT 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           K   Q++  RS+ R +S ++SF K+L +     E+        KK   +P  L  ++   
Sbjct: 62  KLYGQQLASRSVARKISSLRSFYKFLLREGWAAENPFALAALPKKEQKIPNFLYREELEA 121

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L        +     +  RN+A+L LLY  G R+SE   +   ++    ST+ I GKG+K
Sbjct: 122 LF-----RVNDGNTAVGQRNAALLELLYATGARVSECCHIRLSDLDFAASTVLIHGKGNK 176

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLN---IQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            R VP     R+A+  Y      +L          LF   RG PL P   +  + ++   
Sbjct: 177 QRYVPFGRPAREALERYIGGGRRELVGKLPADHRYLFVNARGNPLTPRGVRYILDRIVET 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L  + + H LRH+FATHLL+ G DLRS+Q +LGH  LS+TQ+YT+V      D +  I
Sbjct: 237 AALTQNISPHVLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVT----KDRLRRI 292

Query: 314 YDQTHPSI 321
           Y Q HP  
Sbjct: 293 YLQAHPRA 300


>gi|300812172|ref|ZP_07092616.1| tyrosine recombinase XerD [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496857|gb|EFK31935.1| tyrosine recombinase XerD [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 301

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 101/311 (32%), Positives = 163/311 (52%), Gaps = 17/311 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L ++  ++L+  +IERGLS  T+ +Y+ D    L FLAF  EE++    +  +   EI 
Sbjct: 6   KLAEQINDYLRYSQIERGLSPNTIAAYKQDL---LEFLAFVKEEQMPAWPLEAV---EID 59

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           AF++K R     + S+ R +S +  F ++L ++++     +  +   K+   +P AL E 
Sbjct: 60  AFLAKERDLGKANSSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEA 119

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L++         T  +  R+ A++ LLY  G+R+SEA++L   ++  D   +++ G
Sbjct: 120 EVGKLLEQ-----PDLTTDLGIRDRALVELLYATGMRVSEAVNLQLADVHADLQLIKVLG 174

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           KG K R++P+       I  Y  +    L         LF   RG  L      + I++ 
Sbjct: 175 KGSKERLIPVSALALDWIKRYLPVRDQQLLKRGKSSDYLFLNSRGGQLTRQAVWQKIKKY 234

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  G+    T HTLRHSFATHLL +G DLR +Q ILGH  +STTQIYTN+  K+  D  
Sbjct: 235 CQQAGIAKDVTPHTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYTNLTQKHILD-- 292

Query: 311 MEIYDQTHPSI 321
             +Y +THP I
Sbjct: 293 --VYQKTHPRI 301


>gi|15924487|ref|NP_372021.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927078|ref|NP_374611.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           N315]
 gi|21283180|ref|NP_646268.1| site-specific recombinase [Staphylococcus aureus subsp. aureus MW2]
 gi|49483747|ref|YP_040971.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49486335|ref|YP_043556.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57650453|ref|YP_186382.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus COL]
 gi|87160007|ref|YP_494143.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195302|ref|YP_500106.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|148267981|ref|YP_001246924.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus JH9]
 gi|150394046|ref|YP_001316721.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus JH1]
 gi|151221617|ref|YP_001332439.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156979816|ref|YP_001442075.1| site-specific recombinase [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509725|ref|YP_001575384.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221140082|ref|ZP_03564575.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|253314865|ref|ZP_04838078.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253733255|ref|ZP_04867420.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255006283|ref|ZP_05144884.2| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257425620|ref|ZP_05602044.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428281|ref|ZP_05604679.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430918|ref|ZP_05607298.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433607|ref|ZP_05609965.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436520|ref|ZP_05612564.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           M876]
 gi|257793574|ref|ZP_05642553.1| tyrosine recombinase XerD [Staphylococcus aureus A9781]
 gi|258411126|ref|ZP_05681406.1| tyrosine recombinase xerD [Staphylococcus aureus A9763]
 gi|258419910|ref|ZP_05682871.1| tyrosine recombinase XerD [Staphylococcus aureus A9719]
 gi|258423151|ref|ZP_05686044.1| tyrosine recombinase XerD [Staphylococcus aureus A9635]
 gi|258437328|ref|ZP_05689312.1| tyrosine recombinase xerD [Staphylococcus aureus A9299]
 gi|258443533|ref|ZP_05691872.1| tyrosine recombinase xerD [Staphylococcus aureus A8115]
 gi|258446740|ref|ZP_05694894.1| tyrosine recombinase xerD [Staphylococcus aureus A6300]
 gi|258448655|ref|ZP_05696767.1| tyrosine recombinase xerD [Staphylococcus aureus A6224]
 gi|258451155|ref|ZP_05699190.1| tyrosine recombinase xerD [Staphylococcus aureus A5948]
 gi|258454271|ref|ZP_05702241.1| tyrosine recombinase xerD [Staphylococcus aureus A5937]
 gi|262049084|ref|ZP_06021961.1| site-specific recombinase [Staphylococcus aureus D30]
 gi|262051169|ref|ZP_06023393.1| site-specific recombinase [Staphylococcus aureus 930918-3]
 gi|269203124|ref|YP_003282393.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282892996|ref|ZP_06301230.1| tyrosine recombinase XerD [Staphylococcus aureus A8117]
 gi|282904077|ref|ZP_06311965.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           C160]
 gi|282905904|ref|ZP_06313759.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908814|ref|ZP_06316632.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282911133|ref|ZP_06318935.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914302|ref|ZP_06322088.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           M899]
 gi|282919271|ref|ZP_06327006.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           C427]
 gi|282924596|ref|ZP_06332264.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           C101]
 gi|282924746|ref|ZP_06332413.1| tyrosine recombinase XerD [Staphylococcus aureus A9765]
 gi|282928967|ref|ZP_06336554.1| tyrosine recombinase XerD [Staphylococcus aureus A10102]
 gi|283958259|ref|ZP_06375710.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|284024557|ref|ZP_06378955.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 132]
 gi|293503379|ref|ZP_06667226.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510394|ref|ZP_06669100.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           M809]
 gi|293530933|ref|ZP_06671615.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           M1015]
 gi|294848527|ref|ZP_06789273.1| tyrosine recombinase XerD [Staphylococcus aureus A9754]
 gi|295406617|ref|ZP_06816422.1| tyrosine recombinase XerD [Staphylococcus aureus A8819]
 gi|296276353|ref|ZP_06858860.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MR1]
 gi|297207783|ref|ZP_06924218.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297245799|ref|ZP_06929664.1| tyrosine recombinase XerD [Staphylococcus aureus A8796]
 gi|297590959|ref|ZP_06949597.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MN8]
 gi|300911864|ref|ZP_07129307.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304380916|ref|ZP_07363576.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|60416269|sp|P0A0N9|XERD_STAAM RecName: Full=Tyrosine recombinase xerD
 gi|60416270|sp|P0A0P0|XERD_STAAN RecName: Full=Tyrosine recombinase xerD
 gi|60416271|sp|P0A0P1|XERD_STAAW RecName: Full=Tyrosine recombinase xerD
 gi|60416272|sp|P0A0P2|XERD_STAAU RecName: Full=Tyrosine recombinase xerD
 gi|81649271|sp|Q6G967|XERD_STAAS RecName: Full=Tyrosine recombinase xerD
 gi|81651036|sp|Q6GGK1|XERD_STAAR RecName: Full=Tyrosine recombinase xerD
 gi|81694449|sp|Q5HFS5|XERD_STAAC RecName: Full=Tyrosine recombinase xerD
 gi|3747042|gb|AAC64162.1| tyrosine recombinase XerD [Staphylococcus aureus]
 gi|13701296|dbj|BAB42590.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247268|dbj|BAB57659.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|21204620|dbj|BAB95316.1| site-specific recombinase [Staphylococcus aureus subsp. aureus MW2]
 gi|49241876|emb|CAG40569.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49244778|emb|CAG43214.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57284639|gb|AAW36733.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus COL]
 gi|87125981|gb|ABD20495.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202860|gb|ABD30670.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147741050|gb|ABQ49348.1| tyrosine recombinase XerD subunit [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946498|gb|ABR52434.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus JH1]
 gi|150374417|dbj|BAF67677.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156721951|dbj|BAF78368.1| site-specific recombinase [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368534|gb|ABX29505.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253728795|gb|EES97524.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257271314|gb|EEV03460.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275122|gb|EEV06609.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278348|gb|EEV08984.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281700|gb|EEV11837.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283871|gb|EEV13994.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           M876]
 gi|257787546|gb|EEV25886.1| tyrosine recombinase XerD [Staphylococcus aureus A9781]
 gi|257840276|gb|EEV64740.1| tyrosine recombinase xerD [Staphylococcus aureus A9763]
 gi|257844095|gb|EEV68483.1| tyrosine recombinase XerD [Staphylococcus aureus A9719]
 gi|257846601|gb|EEV70622.1| tyrosine recombinase XerD [Staphylococcus aureus A9635]
 gi|257848533|gb|EEV72521.1| tyrosine recombinase xerD [Staphylococcus aureus A9299]
 gi|257850939|gb|EEV74882.1| tyrosine recombinase xerD [Staphylococcus aureus A8115]
 gi|257854315|gb|EEV77264.1| tyrosine recombinase xerD [Staphylococcus aureus A6300]
 gi|257857933|gb|EEV80822.1| tyrosine recombinase xerD [Staphylococcus aureus A6224]
 gi|257861210|gb|EEV84023.1| tyrosine recombinase xerD [Staphylococcus aureus A5948]
 gi|257863550|gb|EEV86308.1| tyrosine recombinase xerD [Staphylococcus aureus A5937]
 gi|259160806|gb|EEW45826.1| site-specific recombinase [Staphylococcus aureus 930918-3]
 gi|259162753|gb|EEW47318.1| site-specific recombinase [Staphylococcus aureus D30]
 gi|262075414|gb|ACY11387.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269940989|emb|CBI49373.1| integrase/recombinase [Staphylococcus aureus subsp. aureus TW20]
 gi|282313431|gb|EFB43826.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           C101]
 gi|282317081|gb|EFB47455.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           C427]
 gi|282321483|gb|EFB51808.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           M899]
 gi|282324828|gb|EFB55138.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327078|gb|EFB57373.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282331196|gb|EFB60710.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282589374|gb|EFB94465.1| tyrosine recombinase XerD [Staphylococcus aureus A10102]
 gi|282592753|gb|EFB97759.1| tyrosine recombinase XerD [Staphylococcus aureus A9765]
 gi|282595695|gb|EFC00659.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           C160]
 gi|282764314|gb|EFC04440.1| tyrosine recombinase XerD [Staphylococcus aureus A8117]
 gi|283470776|emb|CAQ49987.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           ST398]
 gi|283790408|gb|EFC29225.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|285817178|gb|ADC37665.1| Site-specific recombinase XerD [Staphylococcus aureus 04-02981]
 gi|290920201|gb|EFD97267.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291095045|gb|EFE25310.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466758|gb|EFF09278.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           M809]
 gi|294824553|gb|EFG40976.1| tyrosine recombinase XerD [Staphylococcus aureus A9754]
 gi|294968364|gb|EFG44388.1| tyrosine recombinase XerD [Staphylococcus aureus A8819]
 gi|296887800|gb|EFH26698.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297177450|gb|EFH36702.1| tyrosine recombinase XerD [Staphylococcus aureus A8796]
 gi|297575845|gb|EFH94561.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MN8]
 gi|298694781|gb|ADI98003.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           ED133]
 gi|300886110|gb|EFK81312.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302751329|gb|ADL65506.1| site-specific recombinase XerD [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340643|gb|EFM06577.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312438035|gb|ADQ77106.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|312829886|emb|CBX34728.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315129770|gb|EFT85760.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315195394|gb|EFU25781.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|315198812|gb|EFU29140.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140619|gb|EFW32473.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144155|gb|EFW35924.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329314175|gb|AEB88588.1| Tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329725291|gb|EGG61778.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           21189]
 gi|329727344|gb|EGG63800.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           21172]
          Length = 295

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 96/305 (31%), Positives = 158/305 (51%), Gaps = 15/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+ ++IE+GLS  T+ +Y  D +++  ++  +      I  I  +    I+  +  
Sbjct: 5   IEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHH-----ISHIDFIDRQLIQECLGH 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q    +S+ R +S I+SF ++  + K   +   + + + K    LP  LN  + L L
Sbjct: 60  LIDQGQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLAL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++     T    K    R+  +L LLY  G+R+SE + L  +N+      +R+ GKGDK 
Sbjct: 120 LE-----TPDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKE 174

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVPL  +V + +  Y   + P  L   +   LF  + GKPL+     + I+Q      +
Sbjct: 175 RIVPLGDAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y+Q
Sbjct: 235 KKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYNQ 290

Query: 317 THPSI 321
            HP  
Sbjct: 291 FHPRA 295


>gi|296140077|ref|YP_003647320.1| tyrosine recombinase XerD [Tsukamurella paurometabola DSM 20162]
 gi|296028211|gb|ADG78981.1| tyrosine recombinase XerD [Tsukamurella paurometabola DSM 20162]
          Length = 324

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 90/322 (27%), Positives = 148/322 (45%), Gaps = 18/322 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           V+  L +  + +L +L +ERG +  TL SY  D  ++  +L      ++ I  +  ++ T
Sbjct: 13  VNTPLDEALRAYLDHLTVERGAAANTLSSYRRDLDRYREYLV-----ELGIDDLASVTST 67

Query: 70  EIRAFISKRRTQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           ++  F+   R        +   S  RSL  ++   ++     +T       +R    +  
Sbjct: 68  QVSGFLVALREGSDGRPPLAASSAARSLIAVRGLHRFAAAEGLTASDVAREVRPPAPAKR 127

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP+AL+    + L++        +T     R+ A+L LLY CG RISE  +L   +I   
Sbjct: 128 LPKALSIDTVIALLEAAGGDGESDT-PSRLRDRALLELLYSCGARISEVTALDVDDIDVQ 186

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
             ++ + GKG K R+VP+      AI  Y       L       LF  +RG  L+     
Sbjct: 187 SRSVVLMGKGGKQRVVPIGRPALAAIEAYLVRGRPSLVKKSNPALFLNVRGGRLSRQSAW 246

Query: 245 RYIRQLRRYLGLP---LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + +       G+    +  + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQ+YT V
Sbjct: 247 QVLATAAERAGIDTDAVHVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLV 306

Query: 302 NSKNGGDWMMEIYDQTHPSITQ 323
             +     + E+Y Q HP   +
Sbjct: 307 TVQ----ALREVYAQAHPRAVR 324


>gi|307129430|ref|YP_003881446.1| site-specific tyrosine recombinase [Dickeya dadantii 3937]
 gi|306526959|gb|ADM96889.1| site-specific tyrosine recombinase [Dickeya dadantii 3937]
          Length = 299

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 93/306 (30%), Positives = 150/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L +ER L++ TL SY  D R    +LA +        ++ Q   ++++ F+++
Sbjct: 9   IEQFLDALWLERNLAENTLSSYRNDLRSLADWLAHHD------SSLLQAQPSDLQDFLAE 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++   +YL + K   +     + + K    LP+ L E Q   L
Sbjct: 63  RLEGGYKATSSARLLSAMRRLFQYLYREKQRPDDPSAPLSSPKLPQRLPKDLTEAQVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +           + I+ R+ A+L LLY  GLR+SE + LT  ++   Q  +R+ GKG+K 
Sbjct: 123 L-----AAPVTDQPIELRDKAMLELLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKE 177

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       + +Y     P+ LN      LF   R + +    F   I+       +
Sbjct: 178 RLVPLGEEAVYWLEQYLEYSRPWLLNGQTLDVLFPSNRAQQMTRQTFWHRIKHYATLASI 237

Query: 257 PL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 238 DSNKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 293

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 294 QHHPRA 299


>gi|253732140|ref|ZP_04866305.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724095|gb|EES92824.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 295

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 96/305 (31%), Positives = 158/305 (51%), Gaps = 15/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+ ++IE+GLS  T+ +Y  D +++  ++  +      I  I  +    I+  +  
Sbjct: 5   IEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHH-----ISHIDFIDRQLIQECLGH 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q    +S+ R +S I+SF ++  + K   +   + + + K    LP  LN  + L L
Sbjct: 60  LIDQGQSAKSIARFISTIRSFHQFAIREKYAVKDPTVLLDSPKYDKKLPDVLNVDEVLAL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++     T    K    R+  +L LLY  G+R+SE + L  +N+      +R+ GKGDK 
Sbjct: 120 LE-----TPDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKE 174

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVPL  +V + +  Y   + P  L   +   LF  + GKPL+     + I+Q      +
Sbjct: 175 RIVPLGDAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y+Q
Sbjct: 235 KKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYNQ 290

Query: 317 THPSI 321
            HP  
Sbjct: 291 FHPRA 295


>gi|154244121|ref|YP_001415079.1| integrase family protein [Xanthobacter autotrophicus Py2]
 gi|154158206|gb|ABS65422.1| integrase family protein [Xanthobacter autotrophicus Py2]
          Length = 342

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 122/318 (38%), Positives = 181/318 (56%), Gaps = 6/318 (1%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
            + L   V+ E+    + WL  L  ER LS  TL++Y  D    L+ L  +      +  
Sbjct: 13  AHGLLSAVTPEVGAAIEGWLAGLAHERRLSPKTLEAYARDLAVVLLRLTDHLGACPGLGD 72

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +  L+  ++RA ++ RR   +  R+L R L+  +SF ++L++  +     +  +R  K  
Sbjct: 73  LAGLTTADVRAVLAARRADGVAPRTLVRLLAAARSFGRHLEREGLGKVGALTAVRAPKVP 132

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            SLP+ ++   A  L D           W+ AR++A++ LLYG GLRISEALSLTP+++ 
Sbjct: 133 RSLPKPVSIAAARALSDPTTRAGEDREDWVLARDAAVIALLYGAGLRISEALSLTPRDVP 192

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
            D  ++ + GKG K R+VPL+  VR++I EY  +CP  L    + PLFRG RG PL+P +
Sbjct: 193 ADAESITVTGKGRKTRMVPLIAPVRRSIAEYRAICPHAL--GPEGPLFRGTRGGPLSPRI 250

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            Q  + ++R  LGLP S T H LRH+FATHLLS GG++R+IQ +LGH  LSTTQIYT V+
Sbjct: 251 VQLAVERMRGALGLPQSATPHALRHAFATHLLSRGGEIRAIQELLGHASLSTTQIYTEVD 310

Query: 303 SKNGGDWMMEIYDQTHPS 320
                  +M  +   HP 
Sbjct: 311 ----ATALMAAWRSAHPR 324


>gi|23099302|ref|NP_692768.1| integrase:recombinase [Oceanobacillus iheyensis HTE831]
 gi|34222800|sp|Q7ZAM3|XERD_OCEIH RecName: Full=Tyrosine recombinase xerD
 gi|22777531|dbj|BAC13803.1| integrase : recombinase [Oceanobacillus iheyensis HTE831]
          Length = 297

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 99/307 (32%), Positives = 157/307 (51%), Gaps = 16/307 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             +++   L IERGLS  TL SY+ D   +L ++  + +      T  ++S T+I  F+ 
Sbjct: 5   AIEDFFHFLRIERGLSDNTLSSYKRDLTNYLQYMKDHDK----TATWDKISRTDIMGFLY 60

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             + Q     ++ R +S I+SF ++L + +IT+    L++   KK   LP  L++ +   
Sbjct: 61  MLKDQGKSTATISRHISSIRSFHQFLIREQITSNDPSLHIETPKKDRKLPDILSQDEVDR 120

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L++  +         +  RN A+L LLY  GLR+SE +SL   ++      ++  GKG K
Sbjct: 121 LLEIKM------NTKLSVRNKAMLELLYATGLRVSELISLNVSDLHLMMGFVQCFGKGSK 174

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            RIVPL  + +  + +Y       L    N +  LF    G+ L    F + ++ L    
Sbjct: 175 ERIVPLGDTAKHYLEKYISEARDSLIKKNNREDALFVNQHGRRLTRQGFWKILKGLTLEA 234

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+  + T HTLRHSFATHLL NG DLR +Q +LGH  +STTQ+YT+V        + ++Y
Sbjct: 235 GILKTITPHTLRHSFATHLLENGADLRLVQEMLGHADISTTQVYTHVTKAR----LKDMY 290

Query: 315 DQTHPSI 321
              HP  
Sbjct: 291 QSYHPRA 297


>gi|256851002|ref|ZP_05556391.1| tyrosine recombinase XerD [Lactobacillus jensenii 27-2-CHN]
 gi|260661214|ref|ZP_05862128.1| tyrosine recombinase XerD [Lactobacillus jensenii 115-3-CHN]
 gi|282932045|ref|ZP_06337503.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1]
 gi|256616064|gb|EEU21252.1| tyrosine recombinase XerD [Lactobacillus jensenii 27-2-CHN]
 gi|260548151|gb|EEX24127.1| tyrosine recombinase XerD [Lactobacillus jensenii 115-3-CHN]
 gi|281303812|gb|EFA95956.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1]
          Length = 300

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 99/324 (30%), Positives = 160/324 (49%), Gaps = 27/324 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+ NNL          +  ++L+   +ERGLSK T+ SY+ D  QF+ +L     +K  I
Sbjct: 1   MKKNNL---------DQVADFLRFCSLERGLSKNTVDSYQLDLNQFIEYL-----DKEKI 46

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
               +     I ++++K+R +     ++ R ++ ++ F +YL ++ I     ++ +   K
Sbjct: 47  TDWPE-DPLIIDSYLAKQRDEGKKTSTISRGITTLRRFYRYLLRQHILVVDPLIQIDTPK 105

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +   LP AL++K+   L+                R+ AIL LLY  G+R+SE ++L   +
Sbjct: 106 QEKRLPLALSQKEVEQLL-----AQPDIKTTTGLRDRAILELLYATGMRVSELINLKEAD 160

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN---IQLPLFRGIRGKP 237
           +  D   +R+ GKG K R+VP+       + +Y         L        LF   R   
Sbjct: 161 LHTDLKIIRVLGKGSKERLVPVTDFALSWLDKYLKNVRDPALLKKGVACDFLFLNNRAGQ 220

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L      + I++  +   +    T HTLRH+FATHLL NG DLR +Q ILGH  +STTQI
Sbjct: 221 LTRQAVWQSIKKYSKLAKIDKDITPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQI 280

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSI 321
           YTN++ K+  D    +Y +THP  
Sbjct: 281 YTNLSQKHIFD----VYQKTHPRA 300


>gi|163941569|ref|YP_001646453.1| site-specific tyrosine recombinase XerC [Bacillus
           weihenstephanensis KBAB4]
 gi|229013014|ref|ZP_04170179.1| Tyrosine recombinase xerC [Bacillus mycoides DSM 2048]
 gi|229134638|ref|ZP_04263448.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST196]
 gi|229168570|ref|ZP_04296293.1| Tyrosine recombinase xerC [Bacillus cereus AH621]
 gi|163863766|gb|ABY44825.1| tyrosine recombinase XerC [Bacillus weihenstephanensis KBAB4]
 gi|228614976|gb|EEK72078.1| Tyrosine recombinase xerC [Bacillus cereus AH621]
 gi|228648899|gb|EEL04924.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST196]
 gi|228748268|gb|EEL98128.1| Tyrosine recombinase xerC [Bacillus mycoides DSM 2048]
          Length = 301

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 90/315 (28%), Positives = 159/315 (50%), Gaps = 17/315 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +   + K  Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y 
Sbjct: 1   MDVNVKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYA 55

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++R +++    QK+  +S+ R +S ++S  ++L +     ++        KK  S+P+ L
Sbjct: 56  DVRLYLTTLHDQKLARKSVARKVSSLRSLYRFLMREGYQKDNPFALASLPKKELSIPKFL 115

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
             ++   L +      S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ 
Sbjct: 116 YAEELEELFE-----VSDTGAPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTIL 170

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRY 246
           + GKG K R +P     + A++ Y +     L    +     +F   +GKPL     +  
Sbjct: 171 VMGKGKKQRYIPFGSYAQDALITYIENGRKQLAQKTEEQSHMVFLNAKGKPLTDQGVRYV 230

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           + +L +   L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +  
Sbjct: 231 LNELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER- 289

Query: 307 GDWMMEIYDQTHPSI 321
              +  +Y + HP  
Sbjct: 290 ---LRSVYMKHHPRA 301


>gi|290513161|ref|ZP_06552523.1| tyrosine recombinase XerC [Klebsiella sp. 1_1_55]
 gi|289774372|gb|EFD82378.1| tyrosine recombinase XerC [Klebsiella sp. 1_1_55]
          Length = 300

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 85/315 (26%), Positives = 150/315 (47%), Gaps = 17/315 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +    L      +L+ L +ER LS +TL +Y+      ++       ++  +++ +Q   
Sbjct: 1   MTDSPLFACVDRFLRYLGVERQLSPITLTNYQRQLDALIV-----LADEAGLKSWQQCDA 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++R+F  + R   +G  SL   LS ++SF  ++  +     +    +   K    LP+ 
Sbjct: 56  AQVRSFAVRSRRAGLGPASLALRLSALRSFFDWMVSQGELAANPAKGIAAPKIPRHLPKN 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++      L+D  L         +  R+ A+L ++YG GLR+SE ++L  +++  +   +
Sbjct: 116 IDVDDVNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVNLDIKHLDLESGEV 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +P+  +    I  + DL    L       LF    GK ++    Q+   
Sbjct: 170 WVMGKGSKERRLPIGRNAVAWIEHWLDLRG--LFGTDDDALFLSKLGKRISARNVQKRFA 227

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++   
Sbjct: 228 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 284

Query: 309 WMMEIYDQTHPSITQ 323
            +  +YD  HP   +
Sbjct: 285 -LASVYDAAHPRAKR 298


>gi|332799166|ref|YP_004460665.1| Tyrosine recombinase xerC [Tepidanaerobacter sp. Re1]
 gi|332696901|gb|AEE91358.1| Tyrosine recombinase xerC [Tepidanaerobacter sp. Re1]
          Length = 300

 Score =  273 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 89/303 (29%), Positives = 154/303 (50%), Gaps = 14/303 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             +++  L   +  S+ T+++Y  D  QFL +L    ++K++   +   ++  IR F++ 
Sbjct: 6   IDSFIDYLRATKTASQNTIKAYSEDLSQFLEYLK---QKKLSEPILVNATHLHIRGFLAY 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            + +KI  R+  R LS ++SF KYL       E+   ++   K S  LP  L   +   L
Sbjct: 63  LQEKKISKRTAARKLSALRSFYKYLVVEGFVQENIAKSISTPKTSKKLPLFLYPGEIEVL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +      ++ +   +  R+ AI+ LLY  G+R+ E + L   +I    + + + GKG K 
Sbjct: 123 L------SAPKNDVLGIRDKAIMELLYATGMRVGELVLLKTSDINFGSNYIIVFGKGSKE 176

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+V       +++ +Y       L  +I    LF    G  ++    +R I +  +   L
Sbjct: 177 RVVFFGQKAEESLEKYLKESRPFLTKDINCDSLFLNKNGTAISARSIRRIIDKYVKIATL 236

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATH+L+NG DL+++Q +LGH  LSTTQIYT+V  +     + E+YD+
Sbjct: 237 NSEVSPHTLRHTFATHMLNNGADLKTVQELLGHSSLSTTQIYTHVTKER----LKEVYDK 292

Query: 317 THP 319
           T P
Sbjct: 293 TFP 295


>gi|119026091|ref|YP_909936.1| tyrosine recombinase xerD [Bifidobacterium adolescentis ATCC 15703]
 gi|154488864|ref|ZP_02029713.1| hypothetical protein BIFADO_02172 [Bifidobacterium adolescentis
           L2-32]
 gi|118765675|dbj|BAF39854.1| tyrosine recombinase xerD [Bifidobacterium adolescentis ATCC 15703]
 gi|154083001|gb|EDN82046.1| hypothetical protein BIFADO_02172 [Bifidobacterium adolescentis
           L2-32]
          Length = 317

 Score =  273 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 87/324 (26%), Positives = 152/324 (46%), Gaps = 23/324 (7%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ++ +    +L  +++ERGL+K T+++Y+ D R++  +LA        IQ +  ++  ++ 
Sbjct: 3   DIERLIDQFLAYIDVERGLAKATVRAYDSDLRKYNGWLATQ-----GIQDLNAVTTQDVE 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            +I+         RS  R L+ I +F ++     + +      ++  K + +LP  L   
Sbjct: 58  RYIAFLDDSGESARSKARRLASIHAFHRFALNEHVVSNDVAAQVKAPKGATTLPDVLTVD 117

Query: 133 QALTLVDNVLLH---------TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           +  +L+D + +                    R+ A+L  +Y  G R+SEA      ++  
Sbjct: 118 EVASLLDAIPVSQNRPQSEGMADMPDDPAMLRDKALLEFMYATGARVSEACGANLDDVDL 177

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPL 238
           + +  R+ GKG K R+VP+     +AI  Y       L    + P     LF   RGK L
Sbjct: 178 ESNVARLMGKGSKQRLVPVGSYACEAIARYLKNGRPQLESKAKGPTERRALFLNKRGKRL 237

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +       IR       +      HTLRHSFATHL+  G D+R++Q +LGH  ++TTQIY
Sbjct: 238 SRQSVWEIIRAAGERAHIDKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIY 297

Query: 299 TNVNSKNGGDWMMEIYDQTHPSIT 322
           T+V+ +N    ++E Y  +HP   
Sbjct: 298 THVSPEN----LIETYLTSHPRAR 317


>gi|257898863|ref|ZP_05678516.1| phage integrase [Enterococcus faecium Com15]
 gi|293570233|ref|ZP_06681302.1| tyrosine recombinase XerD [Enterococcus faecium E980]
 gi|257836775|gb|EEV61849.1| phage integrase [Enterococcus faecium Com15]
 gi|291609640|gb|EFF38901.1| tyrosine recombinase XerD [Enterococcus faecium E980]
          Length = 295

 Score =  273 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 100/309 (32%), Positives = 162/309 (52%), Gaps = 15/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++  ++L  L IERGLS  T QSYE D  Q+L FL     E+  + + + +    +  
Sbjct: 1   MKEQINDYLHYLNIERGLSANTRQSYERDLEQYLHFL-----EEQKVASWQDVDRFLVIR 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+ K   +K    ++ R +S ++ F ++L++ +IT    + ++   KK+  LP  L   +
Sbjct: 56  FLEKMHEEKKATATVTRMISSLRRFHQFLRQERITDHDPMQHIDTPKKAQKLPSTLTLAE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++         TK +  R+ AIL ++Y  G+R+SE + L   ++      ++  GK
Sbjct: 116 VEKLIE-----APDTTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           GDK RI+PL     + +  Y D     L  +  ++ +F    GK L+     + ++QL R
Sbjct: 171 GDKERIIPLGDYAIQWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVR 230

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT++  K     M +
Sbjct: 231 EAGIYKEVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR----MTD 286

Query: 313 IYDQTHPSI 321
           +Y Q  P  
Sbjct: 287 VYKQHFPRA 295


>gi|254512300|ref|ZP_05124367.1| tyrosine recombinase XerC [Rhodobacteraceae bacterium KLH11]
 gi|221536011|gb|EEE38999.1| tyrosine recombinase XerC [Rhodobacteraceae bacterium KLH11]
          Length = 306

 Score =  273 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 127/313 (40%), Positives = 191/313 (61%), Gaps = 9/313 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++S       Q+WL +L    G S+ T  +Y  D  +FL F+  +  E+  +  + +++ 
Sbjct: 3   LISPACRDALQHWLDSLRALAGRSENTQNAYRGDVTEFLSFMTLHHSERQGLAALERITV 62

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           +++RA+++ +R   +  RSL R LS +KSF ++L +R+    + +L+ R  K +  LPR 
Sbjct: 63  SDMRAWMADQRNSDVSARSLARKLSAVKSFYRWLAEREGFEPTAVLSTRAPKFTKKLPRP 122

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L E  A  +++ V L ++  + W+ AR+ A++ LLYGCGLRISEALSLT  +      TL
Sbjct: 123 LAEDAARAMIETVELQSA--SDWVAARDVAVVTLLYGCGLRISEALSLTGADAPL-PDTL 179

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKG+K R+VP++P+ R A+  Y  LCP   + +    LFRG+RG  LNP   Q  + 
Sbjct: 180 RILGKGEKERVVPVIPAARSAVDRYLRLCPHPQSPDA--ALFRGVRGGALNPSAIQGVMA 237

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           + R  LGLP + T H +RHSFATHLLS GGDLR+IQ +LGH  LSTTQ YT V++     
Sbjct: 238 KARMQLGLPATATPHAMRHSFATHLLSAGGDLRAIQELLGHASLSTTQAYTAVDTAR--- 294

Query: 309 WMMEIYDQTHPSI 321
            +ME+Y++ HP  
Sbjct: 295 -LMEVYNRAHPKA 306


>gi|229086384|ref|ZP_04218560.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-44]
 gi|228696900|gb|EEL49709.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-44]
          Length = 302

 Score =  273 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 89/309 (28%), Positives = 155/309 (50%), Gaps = 17/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R ++
Sbjct: 8   KLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYVDVRLYL 62

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +K+  +S+ R +S ++S  ++L +     ++        KK  S+P+ L  ++  
Sbjct: 63  TTLHDEKLARKSVARKVSSLRSLYRFLMREGYREDNPFALASLPKKEWSIPKFLYVEELE 122

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L +   + T      +  RN A+L L+Y  G+R+SE +SL   +I     T+ + GKG 
Sbjct: 123 KLFEVSDVKTP-----LGQRNQALLELMYATGIRVSECVSLQFTDIDFSVGTILVTGKGK 177

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRR 252
           K R +P     + A+  Y +     L    +     +F   +G PL     +  +  L +
Sbjct: 178 KQRYIPFGSYAQDALTTYIENGRKQLAKKTEEHSQMVFLNAKGAPLTDRGVRYILNDLIK 237

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +     +  
Sbjct: 238 KASLTMKISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER----LRS 293

Query: 313 IYDQTHPSI 321
           +Y + HP  
Sbjct: 294 VYMKHHPRA 302


>gi|254486283|ref|ZP_05099488.1| tyrosine recombinase XerC [Roseobacter sp. GAI101]
 gi|214043152|gb|EEB83790.1| tyrosine recombinase XerC [Roseobacter sp. GAI101]
          Length = 314

 Score =  273 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 116/314 (36%), Positives = 178/314 (56%), Gaps = 9/314 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++S       Q WL +    +G ++ T+ +Y+ D   FL F+  +  + I +  +  ++ 
Sbjct: 9   LISPAARDAMQTWLDHQRALKGAAENTITAYQGDVTDFLAFMTLHKGDSIGLGALANITI 68

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           +++R+++++ R   +G RSL R LS +K+F ++L +R+    + +L+ R+ K    LPR 
Sbjct: 69  SDMRSWMARTRGPDVGPRSLARKLSAVKAFYRWLAEREGFEPTAVLSTRSPKFPKKLPRP 128

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L    A  ++D V L +     W+ AR+ A+L LL+GCGLRISEAL L   +       L
Sbjct: 129 LAVDAAKAMIDCVELQSPRP--WVAARDVAVLTLLWGCGLRISEALGLKGADAPL-PDVL 185

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKG K R+VP+LP+ R A+  Y   CP          LF+ +RG PL      + + 
Sbjct: 186 RIVGKGGKERVVPVLPAARDAVDAYLRACPHPQEHGT--ALFKAVRGGPLAARAIAQVMA 243

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
             R  LGLP + T H +RHSFATHLL  GGDLR+IQ +LGH  LSTTQ YT V++     
Sbjct: 244 DARMQLGLPATATPHAMRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYTAVDTAR--- 300

Query: 309 WMMEIYDQTHPSIT 322
            +M++Y++ HP  T
Sbjct: 301 -LMDVYNRAHPKAT 313


>gi|206577103|ref|YP_002241126.1| tyrosine recombinase XerC [Klebsiella pneumoniae 342]
 gi|206566161|gb|ACI07937.1| tyrosine recombinase XerC [Klebsiella pneumoniae 342]
          Length = 300

 Score =  273 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 85/315 (26%), Positives = 149/315 (47%), Gaps = 17/315 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +    L      +L+ L +ER LS +TL +Y+      +        ++  +++ +Q   
Sbjct: 1   MTDSPLFACVDRFLRYLGVERQLSPITLTNYQRQLDALIA-----LADEAGLKSWQQCDA 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++R+F  + R   +G  SL   LS ++SF  ++  +     +    +   K    LP+ 
Sbjct: 56  AQVRSFAVRSRRAGLGPASLALRLSALRSFFDWMVSQGELAANPAKGIAAPKIPRHLPKN 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++      L+D  L         +  R+ A+L ++YG GLR+SE ++L  +++  +   +
Sbjct: 116 IDVDDVNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVNLDIKHLDLESGEV 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +P+  +    I  + DL    L       LF    GK ++    Q+   
Sbjct: 170 WVMGKGSKERRLPIGRNAVAWIEHWLDLRG--LFGTDDDALFLSKLGKRISARNVQKRFA 227

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++   
Sbjct: 228 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 284

Query: 309 WMMEIYDQTHPSITQ 323
            +  +YD  HP   +
Sbjct: 285 -LASVYDAAHPRAKR 298


>gi|57234468|ref|YP_181457.1| tyrosine recombinase XerC [Dehalococcoides ethenogenes 195]
 gi|57224916|gb|AAW39973.1| tyrosine recombinase XerC [Dehalococcoides ethenogenes 195]
          Length = 307

 Score =  273 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 92/313 (29%), Positives = 148/313 (47%), Gaps = 15/313 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +    +L+ L +E+ +S  TL++Y  D   F+ +L         + +  ++    +R 
Sbjct: 1   MQENFNKYLEYLTVEKNVSAYTLRNYRTDLIGFVNYLIEKK-----VSSFDKVDRYILRD 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++S    + I   S+ R LS ++SF +YL +  +  ++  LN  + +    LP  L   +
Sbjct: 56  YMSSLIEKGIVKGSIARKLSAVRSFYRYLMREGLIQKNPTLNASSPRLDKRLPEFLTTAE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                 N LL     +     R+ A + LLY  GLR+SE + L  +N+      +R+ GK
Sbjct: 116 V-----NKLLRIPDSSTPQGLRDKAFMELLYASGLRVSELVKLDIENLDLHSHQIRVWGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRR 252
           G K RIV +     ++I  Y +L    L      P LF    G  L+   FQ  + +L  
Sbjct: 171 GSKERIVLMGLPAIQSIQTYLNLGRPLLKGKRNTPALFLNPNGGRLSARSFQERLDKLAH 230

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+      H LRH+FATHLL  G DLR +Q +LGH  LSTTQIYT+V          +
Sbjct: 231 QAGIEKHVHPHMLRHTFATHLLDGGADLRVVQELLGHSNLSTTQIYTHVTKSQA----RK 286

Query: 313 IYDQTHPSITQKD 325
           +Y  +HP    ++
Sbjct: 287 VYMSSHPLAKPQN 299


>gi|145298066|ref|YP_001140907.1| site-specific integrase/recombinase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850838|gb|ABO89159.1| site-specific integrase/recombinase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 303

 Score =  273 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 91/316 (28%), Positives = 158/316 (50%), Gaps = 19/316 (6%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P + +  L+   + +L  L +ERGLS  T+ SY  D  +F  +L          +++   
Sbjct: 6   PAVHNHPLI---EPFLDALWLERGLSDNTVSSYRSDLEKFAFWLDGQG------RSLLLA 56

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
              +I+ +++ R   +    S  R LS ++ F +YL + K+ ++   + +   K    LP
Sbjct: 57  GMDDIQHYLAWRVDHQFAASSTARFLSALRRFYQYLNREKLRSDDPTVLLEGPKLPKKLP 116

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             L+E +   L+ + L+        ++ R+ A+L LLY  GLR+SE + LT +++   Q 
Sbjct: 117 SDLSEAEVEALLQSPLV-----DDPLELRDKAMLELLYATGLRVSELVGLTAEHVSLRQG 171

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            +R+ GKG+K R+VP+       +  YY       L       +F   + + +    F  
Sbjct: 172 LVRVVGKGNKERLVPMGEEAVHWLERYYREARTLLLGGTSSDVVFPSKQARMMTRQTFWH 231

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            I+   +  G+    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++ 
Sbjct: 232 RIKLYAQRAGIRGELSPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVANER 291

Query: 306 GGDWMMEIYDQTHPSI 321
               +  ++ + HP  
Sbjct: 292 ----LKALHGEHHPRA 303


>gi|227496090|ref|ZP_03926396.1| tyrosine recombinase [Actinomyces urogenitalis DSM 15434]
 gi|226834324|gb|EEH66707.1| tyrosine recombinase [Actinomyces urogenitalis DSM 15434]
          Length = 316

 Score =  273 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 95/322 (29%), Positives = 156/322 (48%), Gaps = 22/322 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +   L + R+ +L +L +ERGLS  TL +YE D  ++  FL         +Q +  ++  
Sbjct: 7   LPVALERARRGYLAHLRVERGLSPNTLAAYERDLTRYCRFLLAR-----GVQDLAAVTEA 61

Query: 70  EIRAFISKRRT-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           ++ AF+   RT     + +   S  R+++ ++ + K+L     T       +   +    
Sbjct: 62  DVAAFLEAIRTGDDGGRALAASSASRTVTAVRGWHKFLLDEGNTDVDPSAAVHPPQVGRR 121

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP+AL+ ++   L++      S +      R+ A+L LLY  G RISEA+ L   ++  +
Sbjct: 122 LPKALSVEEVQALLE----AASTDDSPRSLRDRALLELLYATGARISEAVGLVIDDLDRE 177

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGV 242
              +R+ GKG K RIVP+      A+  Y       L    +    +F    G+PL+   
Sbjct: 178 SGCIRLFGKGRKERIVPVGQYAWDALDAYLVQARPVLAAKGRGVPEVFLNTLGRPLSRQS 237

Query: 243 FQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               +RQ     GL      + HTLRHSFATHLL+ G D+R +Q +LGH  ++TTQIYT 
Sbjct: 238 AWGVLRQASARAGLGADKHVSPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTK 297

Query: 301 VNSKNGGDWMMEIYDQTHPSIT 322
           V  ++    + E+Y  +HP   
Sbjct: 298 VTVEH----LREVYATSHPRAR 315


>gi|229061434|ref|ZP_04198779.1| Tyrosine recombinase xerC [Bacillus cereus AH603]
 gi|228717857|gb|EEL69505.1| Tyrosine recombinase xerC [Bacillus cereus AH603]
          Length = 301

 Score =  273 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 89/307 (28%), Positives = 156/307 (50%), Gaps = 17/307 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R +++ 
Sbjct: 9   LQLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYLTT 63

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              QK+  +S+ R +S ++S  ++L +     ++        KK  S+P+ L  ++   L
Sbjct: 64  LHDQKLARKSVARKVSSLRSLYRFLMREGYQKDNPFALASLPKKELSIPKFLYAEELEEL 123

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            +      S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG K 
Sbjct: 124 FE-----VSDTGAPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 178

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           R +P     + A++ Y +     L    +     +F   +GKPL     +  + +L +  
Sbjct: 179 RYIPFGSYAQDALITYIENGRKQLAQKTEEQSHMVFLNAKGKPLTDQGVRYVLNELIKKA 238

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +     +  +Y
Sbjct: 239 SLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER----LRSVY 294

Query: 315 DQTHPSI 321
            + HP  
Sbjct: 295 MKHHPRA 301


>gi|325684289|gb|EGD26462.1| integrase/recombinase XerD [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 301

 Score =  273 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 101/311 (32%), Positives = 163/311 (52%), Gaps = 17/311 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L ++  ++L+  +IERGLS  T+ +Y  D    L FLAF  EE++    +  +   EI 
Sbjct: 6   KLAEQINDYLRYSQIERGLSPNTIAAYHQDL---LEFLAFVKEEQMPAWPLEAV---EID 59

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           AF++K R     + S+ R +S +  F ++L ++++     +  +   K+   +P AL E 
Sbjct: 60  AFLAKERDLGKANSSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEA 119

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L++         T  +  R+ A++ LLY  G+R+SEA++L   ++  D   +++ G
Sbjct: 120 EVGKLLEQ-----PDLTTDLGIRDRALVELLYATGIRVSEAVNLKLADVHADLQLIKVLG 174

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           KG+K R++P+       I  Y  +    L         LF   RG  L      + I++ 
Sbjct: 175 KGNKERLIPVSALALDWIKRYLPVRDQQLLKRGKSSDYLFLNSRGGQLTRQAVWQKIKKY 234

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  G+    T HTLRHSFATHLL +G DLR +Q ILGH  +STTQIYTN+  K+  D  
Sbjct: 235 CQQAGIAKDVTPHTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYTNLTQKHILD-- 292

Query: 311 MEIYDQTHPSI 321
             +Y +THP I
Sbjct: 293 --VYQKTHPRI 301


>gi|270264904|ref|ZP_06193168.1| DNA integration/recombination/invertion protein [Serratia odorifera
           4Rx13]
 gi|270041202|gb|EFA14302.1| DNA integration/recombination/invertion protein [Serratia odorifera
           4Rx13]
          Length = 299

 Score =  273 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 91/306 (29%), Positives = 150/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L +ER L++ TL SY  D +    +L           ++ Q    +++AF+++
Sbjct: 9   IEQFLDALWLERNLAENTLASYRLDLQALSAWLNHQN------TSLLQAQALDLQAFLAE 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q   L
Sbjct: 63  RVAGGYKATSSARLLSAMRRLFQYLYREKLREDDPTALLASPKLPQRLPKDLSEAQVDAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +           + ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K 
Sbjct: 123 L-----QAPCVDQPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKE 177

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       I  Y     P+ +N      LF   R + +    F   I+      G+
Sbjct: 178 RLVPLGEEAVYWIENYLEHGRPWMVNGQALDVLFPSNRCQQMTRQTFWHRIKHYAILAGI 237

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 238 DSERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQ 293

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 294 QHHPRA 299


>gi|332308051|ref|YP_004435902.1| tyrosine recombinase XerD [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175380|gb|AEE24634.1| tyrosine recombinase XerD [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 301

 Score =  273 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 91/303 (30%), Positives = 150/303 (49%), Gaps = 13/303 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + +E+GLS+ TL++Y  D  +F  +L     +++    +  +   +I  +++ 
Sbjct: 11  IEQFLDTIWLEKGLSENTLEAYRSDLTKFSDYLN----KQLPHTHLLDIQTEDINQYMAH 66

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R    + +RS  R LS  + F  Y+    +  +  +  M+N K S  LP+ L+E+Q   L
Sbjct: 67  RYDSGLTERSSARCLSSFRRFSGYMLAHGLREDDPVSRMQNPKLSKPLPKTLSEQQVDDL 126

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +     +       I  R+ A+L +LY  GLR++E ++L    +   Q  +R+ GKG+K 
Sbjct: 127 L-----NAPQTDDPIHLRDKAMLEVLYATGLRVTELVTLRVGQLSVSQGVVRVTGKGNKE 181

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VPL       + +Y       L  N    LF   RG  +    F   I+       + 
Sbjct: 182 RLVPLGEEALDWLSKYLKEARGALLRNESDVLFPSNRGTIMTRQTFWHRIKFHAAQANIT 241

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V +      + E+    
Sbjct: 242 SDLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATAR----LQELVANH 297

Query: 318 HPS 320
           HP 
Sbjct: 298 HPR 300


>gi|306836032|ref|ZP_07469022.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726]
 gi|304568059|gb|EFM43634.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726]
          Length = 296

 Score =  273 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 97/303 (32%), Positives = 147/303 (48%), Gaps = 15/303 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q WL +L +ERG+S  TL +Y  D R+++ +LA        +Q +RQ++   + A++   
Sbjct: 9   QTWLNHLAVERGVSANTLSNYRRDIRRYVDWLADN-----GVQDLRQVTRPMVEAYLKDL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R +K+   S  R+L   +   K+              +        LP  L+  +   L+
Sbjct: 64  R-EKMAVSSANRALIVARGLHKFAVAEGEVDSDVAAEVSPPSTGQHLPETLSVDEVSRLI 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           ++    T      +D R+ A+L +LYG G RISE +SL   ++      L + GKGDK R
Sbjct: 123 ESTPTETP-----VDLRDRALLEVLYGTGARISEVISLNVDDVATADDVLMLHGKGDKER 177

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VPL    R+AI  Y       L       LF   RG  L+       I+   +   L  
Sbjct: 178 LVPLGSHARQAIDAYLVRARPVLGKGKTAALFLNTRGGALSRQSAWSIIKTAAQRSQLDK 237

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           S + HTLRHSFATHLL  G D+R++Q +LGH  ++TTQIYT+V      D + E++   H
Sbjct: 238 SISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVT----ADSLREVWRTAH 293

Query: 319 PSI 321
           P  
Sbjct: 294 PRA 296


>gi|118479053|ref|YP_896204.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis
           str. Al Hakam]
 gi|228986974|ref|ZP_04147100.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|118418278|gb|ABK86697.1| tyrosine recombinase XerC subunit [Bacillus thuringiensis str. Al
           Hakam]
 gi|228772752|gb|EEM21192.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 302

 Score =  273 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 156/309 (50%), Gaps = 17/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R ++
Sbjct: 8   KLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDITYADVRLYL 62

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +K+  +S+ R +S ++S  ++L +     ++        KK  S+P+ L  ++  
Sbjct: 63  TTLHDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELE 122

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L +      S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG 
Sbjct: 123 ELFE-----VSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGK 177

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K R +P     + A++ Y +     L    +     +F   +G PL     +  + +L +
Sbjct: 178 KQRYIPFGSYAQDALITYIENGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIK 237

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +     +  
Sbjct: 238 KASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER----LRS 293

Query: 313 IYDQTHPSI 321
           +Y + HP  
Sbjct: 294 VYMKHHPRA 302


>gi|146337558|ref|YP_001202606.1| site-specific tyrosine recombinase XerC [Bradyrhizobium sp. ORS278]
 gi|146190364|emb|CAL74360.1| Tyrosine recombinase (integrase/recombinase) [Bradyrhizobium sp.
           ORS278]
          Length = 327

 Score =  273 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 128/322 (39%), Positives = 189/322 (58%), Gaps = 10/322 (3%)

Query: 3   GNNLPEIVSFE--LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
             +LP+++  +  +++    WL +L  ER LS  T+++Y  D RQ L FL  +  E +T+
Sbjct: 11  APDLPDLIGADDGVVRAMTQWLAHLRSERRLSPKTVEAYARDLRQCLQFLCTHWGEPVTL 70

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
                L  ++IRAF++ RR   I  RSL R+L+G++SF ++L++        +  +R  K
Sbjct: 71  PRFAALEASDIRAFMAMRRADDIAGRSLMRTLAGLRSFGRFLEREGQGKVGALAGVRAPK 130

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
            + SLP+ L    A  L D           W+ AR++A++ LLYG GLRISEAL L  + 
Sbjct: 131 IAKSLPKPLPMDSAKRLTDADERAGESRETWVLARDAAVMALLYGSGLRISEALGLKRRE 190

Query: 181 --IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
                +   L + GKG+K R+VP+L +V   I EY  LCP+ L    + P+F G +G PL
Sbjct: 191 VPRPGEGDVLIVTGKGNKTRMVPVLQNVLALIDEYARLCPYPL--PAEGPMFLGAKGGPL 248

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +P + Q  + +LR  LGLP S T H LRHSFATHLLS GGDLR+IQ +LGH  LSTTQ+Y
Sbjct: 249 SPRIIQLAMERLRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVY 308

Query: 299 TNVNSKNGGDWMMEIYDQTHPS 320
           T ++S+     ++++Y   HP 
Sbjct: 309 TGIDSER----LLQVYASAHPR 326


>gi|332704250|ref|ZP_08424338.1| Tyrosine recombinase xerC [Desulfovibrio africanus str. Walvis Bay]
 gi|332554399|gb|EGJ51443.1| Tyrosine recombinase xerC [Desulfovibrio africanus str. Walvis Bay]
          Length = 313

 Score =  273 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 110/325 (33%), Positives = 165/325 (50%), Gaps = 13/325 (4%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M     P I  FEL      +L +L++E+G S  T+Q+Y  D  QF  FL   +    ++
Sbjct: 1   MSSTVGP-IPEFELPDSCLAFLVHLDVEKGYSPATVQAYGRDVEQFERFL---SRRDRSL 56

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
                +   ++R+F+++     +   S+ R LS +++  +YL+K  + T + +  + N K
Sbjct: 57  AEPEGVDRDDVRSFLAELHRMGVRKSSMSRKLSSLRTLFRYLRKSGLATGNPMAGVGNPK 116

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +    P++LN  QAL +++  +            R+ A+  LLYG GLRISEAL L   +
Sbjct: 117 QDKRHPKSLNVDQALAVMEAQVSAGPE-----GLRDLALAELLYGSGLRISEALDLNVDD 171

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I      LR+ GKG K RIVPL  +  + +  Y            +  LF G RG  LN 
Sbjct: 172 IDPGSGILRVMGKGRKERIVPLSDASVRRLKSYLVQRHAFPVEPQERALFLGSRGGRLNR 231

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               R +  +    GLP S + HTLRHSFA+HLL +G  LRS+Q +LGH RL+TTQ YT+
Sbjct: 232 RQAARIVEHMAGLAGLPQSISPHTLRHSFASHLLQSGAGLRSVQELLGHKRLTTTQRYTH 291

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKD 325
           +N       +   YD  HP   +KD
Sbjct: 292 LNLAQ----ITRAYDAAHPRSKKKD 312


>gi|328952112|ref|YP_004369446.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109]
 gi|328452436|gb|AEB08265.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109]
          Length = 295

 Score =  273 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 91/308 (29%), Positives = 154/308 (50%), Gaps = 15/308 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +    + + Q+L +ERGL+ LT+++Y  D      FL       +      + +  +++ 
Sbjct: 1   MDAAVEQFFQHLIVERGLAPLTVEAYAHDLAGLRSFLT-----GLGRSRWDETTLEDLQF 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F++    Q +G RS  R LS ++   ++L ++  T+ + +  + + K    LP  L  ++
Sbjct: 56  FLNHLEEQGVGPRSRARKLSAVRQLYRFLLRQGTTSHNPLEWLDSPKLPKGLPTVLGLEE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L     L     T  +  R+ A+L LLY  G+R+SE + LT   +   +  + ++GK
Sbjct: 116 VDRL-----LAAPDPTTPLGQRDDAMLELLYATGMRVSELVGLTASQLDLRRGVVLVRGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRR 252
           G K R++P++    + +  Y       L    + P LF    G  L    F + ++   R
Sbjct: 171 GGKERLIPMVMRAVEKLQLYLQYVRPVLLKRQKTPELFLNRSGTGLTRQGFWKILKGYAR 230

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GLP   + HTLRHSFATHLL  G DLR++Q +LGH  +STTQIYT++++      + E
Sbjct: 231 QTGLPKDLSPHTLRHSFATHLLWQGADLRALQLLLGHADISTTQIYTHLHTAR----LQE 286

Query: 313 IYDQTHPS 320
           I+ Q HP 
Sbjct: 287 IHRQAHPR 294


>gi|296122593|ref|YP_003630371.1| tyrosine recombinase XerC [Planctomyces limnophilus DSM 3776]
 gi|296014933|gb|ADG68172.1| tyrosine recombinase XerC [Planctomyces limnophilus DSM 3776]
          Length = 302

 Score =  273 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 92/314 (29%), Positives = 150/314 (47%), Gaps = 14/314 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +      +L+ L+IER  S+LTL+SY  D      +L         I    QL  +E+R 
Sbjct: 1   MHAAEDRFLRYLQIERNASELTLKSYAEDFGSLHDYLTERVGH---ITEPGQLGISELRG 57

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++          ++ R L+ ++SF ++ ++ ++   +    +R  +    LP+ L  +Q
Sbjct: 58  YVAYLNECGYAKTTIARRLASLRSFFRFCQREQLVEGNPAKALRTPRVGRKLPKFLTTEQ 117

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
            + L++          +    R+ AIL   Y  GLR++E + L   +   D   L + GK
Sbjct: 118 IVKLLE-----APPANEVDGLRDRAILETFYSAGLRVAELVGLNLDDWDQDAQILHVFGK 172

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLR 251
           G K RI PL     KA+ ++  +   +     QL   LF    G  L      R + +  
Sbjct: 173 GKKERIAPLGKHATKALEKWVAVRKPEEAAPPQLKNALFLNRFGTRLTTRSVGRMLEKYI 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +  GL    + HTLRH+FATHLL  G DLRS+Q +LGH  L+TTQIYT+V+++     + 
Sbjct: 233 QLTGLDQLISPHTLRHTFATHLLDGGADLRSVQEMLGHKSLTTTQIYTHVSTQR----LK 288

Query: 312 EIYDQTHPSITQKD 325
           + Y Q HP    +D
Sbjct: 289 DTYQQAHPHAKVQD 302


>gi|313123528|ref|YP_004033787.1| tyrosine recombinase xerd subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280091|gb|ADQ60810.1| Tyrosine recombinase XerD subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 301

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 101/311 (32%), Positives = 162/311 (52%), Gaps = 17/311 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L ++  ++L+  +IERGLS  T+ +Y  D    L FLAF  EE++    +  +   EI 
Sbjct: 6   KLAEQINDYLRYSQIERGLSPNTIAAYHQDL---LEFLAFVKEEQMPAWPLEAV---EID 59

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           AF++K R     + S+ R +S +  F ++L ++++     +  +   K+   +P AL E 
Sbjct: 60  AFLAKERDLGKANSSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEA 119

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L++         T  +  R+ A++ LLY  G+R+SEA++L   ++  D   +++ G
Sbjct: 120 EVGKLLEQ-----PDLTTDLGIRDRALVELLYATGMRVSEAVNLKLADVHADLQLIKVLG 174

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           KG K R++P+       I  Y  +    L         LF   RG  L      + I++ 
Sbjct: 175 KGSKERLIPVSALALDWIKRYLPVRDQQLLKRGKSSDYLFLNSRGGQLTRQAVWQKIKKY 234

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  G+    T HTLRHSFATHLL +G DLR +Q ILGH  +STTQIYTN+  K+  D  
Sbjct: 235 CQQAGIAKDVTPHTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYTNLTQKHILD-- 292

Query: 311 MEIYDQTHPSI 321
             +Y +THP I
Sbjct: 293 --VYQKTHPRI 301


>gi|308188856|ref|YP_003932987.1| Tyrosine recombinase xerC [Pantoea vagans C9-1]
 gi|308059366|gb|ADO11538.1| Tyrosine recombinase xerC [Pantoea vagans C9-1]
          Length = 301

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 86/314 (27%), Positives = 155/314 (49%), Gaps = 17/314 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S  L +    +L+ L++ER LS LT  SY       +        +++ + +  QL   
Sbjct: 1   MSSGLQEAVDGFLRYLKVERQLSPLTQSSYARQLAALVAIA-----DEMKLGSWAQLEPA 55

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++R+  ++ R   +   SL   LS ++SFL +   + + + +    +   +K+  LP+ +
Sbjct: 56  QVRSMAARSRRAGLSASSLALRLSALRSFLDWQVSQGLLSANPAKGVMTPRKARHLPKNI 115

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  +   L++  L         +  R+ A+L ++YG GLR+SE +++  +++  D   + 
Sbjct: 116 DVDEVNQLLEIDL------NDPLAVRDRAMLEVMYGGGLRLSELVNMDCRHVDLDSGEVW 169

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG K R VP+  +    I  +  L   +        LF   RG  ++P   Q+   +
Sbjct: 170 VVGKGSKERRVPIGRTAVTWIQHWLPLR--ETFGGQDDALFLSTRGNRISPRNVQKRFAE 227

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+      H LRHSFATHLL + GDLR++Q +LGH  LSTTQIYT+++ ++    
Sbjct: 228 WGVRQGVASHIHPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQH---- 283

Query: 310 MMEIYDQTHPSITQ 323
           +  +YD  HP   +
Sbjct: 284 LASVYDAAHPRAKR 297


>gi|1303994|dbj|BAA12649.1| YqkM [Bacillus subtilis]
          Length = 296

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 94/309 (30%), Positives = 159/309 (51%), Gaps = 14/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + ++++  + +ERGLS+ T+ SYE D + + ++L     E + +     ++   I  
Sbjct: 1   MKDQIKDFIHYVMVERGLSQNTIVSYERDLKSYSLYLT----ETLHVTDWNHVTRIHIIQ 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++   +      ++  R L+ I+SF ++L + K+T +   +++   K   +LP+ L   +
Sbjct: 57  YLKHLKDSGKSGKTSARHLASIRSFHQFLLREKVTDKDPSVHIETQKTERALPKVLALNE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D     T   T     R+ A+L LLY  G+R+SE + L   ++      +R  GK
Sbjct: 117 VERLLD-----TPKLTSPFGYRDKAMLELLYATGIRVSEMIELKTADVHLSMGFIRCFGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K RIVP+  +   AI EY        L  N+   LF    GK ++   F + ++++  
Sbjct: 172 GRKERIVPIGEAAASAIEEYMTKARGKLLKNNVSDALFLNHHGKQISRQGFWKNLKKIAL 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    T HTLRHSFATHLL +G DLR++Q +LGH  +STTQIYT+V        + +
Sbjct: 232 EAGIKKELTPHTLRHSFATHLLEDGADLRAVQEMLGHADISTTQIYTHVTKTR----LKD 287

Query: 313 IYDQTHPSI 321
           +Y Q HP  
Sbjct: 288 VYKQFHPRA 296


>gi|153214077|ref|ZP_01949211.1| tyrosine recombinase XerD [Vibrio cholerae 1587]
 gi|124115503|gb|EAY34323.1| tyrosine recombinase XerD [Vibrio cholerae 1587]
          Length = 302

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 150/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  +  ERGL++ T+ SY  D  + L ++A           +  +S+  ++ + S 
Sbjct: 12  VEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYR------LDFISFAGLQEYQSW 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q     S  R LS I+   +YL + K+  +     + + K    LP+ L+E Q   L
Sbjct: 66  LSEQNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEAL 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +             ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG K 
Sbjct: 126 L-----SAPDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKE 180

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +  + I  +        L       +F   RG+ +    F   I+      G+
Sbjct: 181 RLVPMGENAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAAIAGI 240

Query: 257 PL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            +   + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + ++++
Sbjct: 241 DVEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHN 296

Query: 316 QTHPSI 321
           + HP  
Sbjct: 297 EHHPRA 302


>gi|304398153|ref|ZP_07380028.1| tyrosine recombinase XerC [Pantoea sp. aB]
 gi|304354439|gb|EFM18811.1| tyrosine recombinase XerC [Pantoea sp. aB]
          Length = 301

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 88/314 (28%), Positives = 156/314 (49%), Gaps = 17/314 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S  LL+    +L+ L++ER LS LT  SY       +        +++ + +  QL   
Sbjct: 1   MSSTLLEAVDGFLRYLKVERQLSPLTQSSYARQLAALVAIA-----DEMKLSSWAQLEPA 55

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++R+  ++ R   +   SL   LS ++SFL +   + + + +    +   +K+  LP+ +
Sbjct: 56  QVRSMAARSRRAGLSASSLALRLSALRSFLDWQVSQGLLSANPAKGVMTPRKARHLPKNI 115

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  +   L++  L         +  R+ A+L ++YG GLR+SE +++  +++  D   + 
Sbjct: 116 DVDEVNQLLEIDL------DDPLAVRDRAMLEVMYGGGLRLSELVNMDCRHVDLDSGEVW 169

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG K R VP+  +    I  +  L   +        LF   RG  ++P   Q+   +
Sbjct: 170 VVGKGSKERRVPIGRTAVTWIQHWLPLR--ETFGAQDDALFLSTRGNRISPRNVQKRFAE 227

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                GL      H LRHSFATHLL + GDLR++Q +LGH  LSTTQIYT+++ ++    
Sbjct: 228 WGIRQGLASHIHPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQH---- 283

Query: 310 MMEIYDQTHPSITQ 323
           +  +YD  HP   +
Sbjct: 284 LASVYDAAHPRAKR 297


>gi|227503694|ref|ZP_03933743.1| site-specific tyrosine recombinase XerD [Corynebacterium accolens
           ATCC 49725]
 gi|227075730|gb|EEI13693.1| site-specific tyrosine recombinase XerD [Corynebacterium accolens
           ATCC 49725]
          Length = 296

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 96/303 (31%), Positives = 145/303 (47%), Gaps = 15/303 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q WL +L +ERG+S  TL +Y  D R+++ +LA        +Q +RQ++   + A++   
Sbjct: 9   QTWLNHLAVERGVSANTLSNYRRDIRRYVDWLAVNE-----VQDLRQVTRPMVEAYLKDL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R + +   S  R+L   +   K+              +        LP  L+  +   L+
Sbjct: 64  R-ETMAVSSANRALIVARGLHKFAVAEGEIDSDVAAEVSPPSTGQHLPETLSVDEVTQLI 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +     T      +D R+ A+L +LYG G RISE +SL   ++      L + GKGDK R
Sbjct: 123 EATPTETP-----VDLRDRALLEVLYGTGARISEVISLNVDDVATGDDVLVLHGKGDKER 177

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VPL    R+AI  Y       L       LF   RG  L+       I+   +   L  
Sbjct: 178 LVPLGSHARQAIDAYLVRARPVLGKGKTAALFLNTRGGALSRQSAWSIIKTAAQRSQLDK 237

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           S + HTLRHSFATHLL  G D+R++Q +LGH  ++TTQIYT+V      D + E++   H
Sbjct: 238 SISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVT----ADSLREVWRTAH 293

Query: 319 PSI 321
           P  
Sbjct: 294 PRA 296


>gi|314939481|ref|ZP_07846715.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a04]
 gi|314941112|ref|ZP_07848010.1| tyrosine recombinase XerD [Enterococcus faecium TX0133C]
 gi|314948724|ref|ZP_07852096.1| tyrosine recombinase XerD [Enterococcus faecium TX0082]
 gi|314951697|ref|ZP_07854740.1| tyrosine recombinase XerD [Enterococcus faecium TX0133A]
 gi|314993956|ref|ZP_07859283.1| tyrosine recombinase XerD [Enterococcus faecium TX0133B]
 gi|314997520|ref|ZP_07862465.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a01]
 gi|313588431|gb|EFR67276.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a01]
 gi|313591558|gb|EFR70403.1| tyrosine recombinase XerD [Enterococcus faecium TX0133B]
 gi|313596161|gb|EFR75006.1| tyrosine recombinase XerD [Enterococcus faecium TX0133A]
 gi|313600113|gb|EFR78956.1| tyrosine recombinase XerD [Enterococcus faecium TX0133C]
 gi|313641283|gb|EFS05863.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a04]
 gi|313644790|gb|EFS09370.1| tyrosine recombinase XerD [Enterococcus faecium TX0082]
          Length = 300

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 100/309 (32%), Positives = 162/309 (52%), Gaps = 15/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++  ++L  L IERGLS  T QSYE D  Q+L FL     ++  I + + +    +  
Sbjct: 6   MKEQINDYLHYLNIERGLSANTRQSYERDLEQYLHFL-----QEQKIASWQDVDRFLVIR 60

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+ K   +K    ++ R +S ++ F ++L++ +IT    + ++   KK+  LP  L   +
Sbjct: 61  FLEKLHEEKKATATVTRMISSLRRFHQFLRQERITDHDPMQHIDTPKKAQKLPSTLTLTE 120

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++         TK +  R+ AIL ++Y  G+R+SE + L   ++      ++  GK
Sbjct: 121 VEKLIE-----APDTTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGK 175

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           GDK RI+PL     + +  Y D     L  +  ++ +F    GK L+     + ++QL R
Sbjct: 176 GDKERIIPLGDYAIQWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVR 235

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT++  K     M +
Sbjct: 236 EAGIYKEVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR----MTD 291

Query: 313 IYDQTHPSI 321
           +Y Q  P  
Sbjct: 292 VYKQHFPRA 300


>gi|251790996|ref|YP_003005717.1| tyrosine recombinase XerD [Dickeya zeae Ech1591]
 gi|247539617|gb|ACT08238.1| tyrosine recombinase XerD [Dickeya zeae Ech1591]
          Length = 299

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 92/306 (30%), Positives = 148/306 (48%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L +ER L++ TL SY  D      +LA +         + Q    +++ F+++
Sbjct: 9   IEQFLDALWLERNLAENTLSSYRNDLCSLAEWLAHHN------SDLLQAQPLDLQGFLAE 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++   +YL + K   +     + + K    LP+ L E Q   L
Sbjct: 63  RLEGGYKATSSARLLSAMRRLFQYLYREKRRADDPSAPLSSPKLPQRLPKDLTEAQVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +           + I+ R+ A+L LLY  GLR+SE + LT  ++   Q  +R+ GKG+K 
Sbjct: 123 L-----AAPVTDQPIELRDKAMLELLYATGLRVSELVGLTISDVSLRQGVVRVVGKGNKE 177

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       + +Y +   P+ LN      LF   R + +    F   I+       +
Sbjct: 178 RLVPLGEEAVYWLEQYLEFSRPWLLNGQTLDVLFPSNRAQQMTRQTFWHRIKHYATLASI 237

Query: 257 PL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 238 DSNKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQ 293

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 294 QHHPRA 299


>gi|65321158|ref|ZP_00394117.1| COG4974: Site-specific recombinase XerD [Bacillus anthracis str.
           A2012]
          Length = 302

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 156/309 (50%), Gaps = 17/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R ++
Sbjct: 8   KLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDITYADVRLYL 62

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +K+  +S+ R +S ++S  ++L +     ++        KK  S+P+ L  ++  
Sbjct: 63  TTLHDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELE 122

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L +      S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG 
Sbjct: 123 ELFE-----VSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGK 177

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K R +P     + A++ Y +     L    +     +F   +G PL     +  + +L +
Sbjct: 178 KQRYIPFGSYAQDALITYIENGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIK 237

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +     +  
Sbjct: 238 KASLTMRISPHILRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER----LRS 293

Query: 313 IYDQTHPSI 321
           +Y + HP  
Sbjct: 294 VYMKHHPRA 302


>gi|224476610|ref|YP_002634216.1| putative site-specific recombinase XerD [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|222421217|emb|CAL28031.1| putative site-specific recombinase XerD [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 299

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 153/305 (50%), Gaps = 15/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+ ++IE+GLS  T+ +Y  D  ++  +L         I  I  +    I+  +  
Sbjct: 9   IEEYLKFIQIEKGLSANTIGAYRRDLNKYKEYLVLKK-----INNIDFIDREIIQQCLGY 63

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                   +S+ R +S ++SF ++  + +   +   + +   K    LP  L+ +  L L
Sbjct: 64  LHDDGHSAKSIARFISTVRSFHQFALRERYAAKDPTVLIETPKYERRLPDVLDVEDVLAL 123

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++     T   +K    R+  IL LLY  G+R++E + +  +++      +R+ GKG K 
Sbjct: 124 LE-----TPDLSKNNGYRDRTILELLYATGMRVTELIHVRVEDVNLIMGFVRVFGKGSKE 178

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RI+PL  +V   + +Y   + P  L   +   LF  + GKPL+     + I+Q      +
Sbjct: 179 RIIPLGETVIDYLKKYIETVRPQLLKQTVTDVLFLNLHGKPLSRQGIWKLIKQYGVKANI 238

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               T H+LRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y++
Sbjct: 239 KKKLTPHSLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYNE 294

Query: 317 THPSI 321
            HP  
Sbjct: 295 FHPRA 299


>gi|229098300|ref|ZP_04229247.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-29]
 gi|228685198|gb|EEL39129.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-29]
          Length = 302

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 156/309 (50%), Gaps = 17/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R ++
Sbjct: 8   KLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYL 62

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +K+  +S+ R +S ++S  ++L +     ++        KK  S+P+ L  ++  
Sbjct: 63  TTLHDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELE 122

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L +      S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG 
Sbjct: 123 ELFE-----VSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGK 177

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K R +P     + A++ Y +     L    +     +F   +G PL     +  + +L +
Sbjct: 178 KQRYIPFGSYAQDALITYMENGRKQLANKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIK 237

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +     +  
Sbjct: 238 KASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER----LRS 293

Query: 313 IYDQTHPSI 321
           +Y + HP  
Sbjct: 294 VYMKHHPRA 302


>gi|47570332|ref|ZP_00240977.1| site-specific recombinase, phage integrase family [Bacillus cereus
           G9241]
 gi|47552997|gb|EAL11403.1| site-specific recombinase, phage integrase family [Bacillus cereus
           G9241]
          Length = 302

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 156/309 (50%), Gaps = 17/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R ++
Sbjct: 8   KLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDITYADVRLYL 62

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +K+  +S+ R +S ++S  ++L +     ++        KK  S+P+ L  ++  
Sbjct: 63  TTLHDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELE 122

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L +      S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG 
Sbjct: 123 ELFE-----VSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGK 177

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRR 252
           K R +P     + A++ Y +     L    +     +F   +G PL     +  + +L +
Sbjct: 178 KQRYIPFGSYAQDALITYIENGRKQLAEKTEEHSHMVFLNAKGTPLTSRGVRYVLNELIK 237

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +     +  
Sbjct: 238 KASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER----LRS 293

Query: 313 IYDQTHPSI 321
           +Y + HP  
Sbjct: 294 VYMKHHPRA 302


>gi|257877980|ref|ZP_05657633.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257881234|ref|ZP_05660887.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257884899|ref|ZP_05664552.1| phage integrase [Enterococcus faecium 1,231,501]
 gi|257889821|ref|ZP_05669474.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|258616535|ref|ZP_05714305.1| integrase/recombinase XerD, putative [Enterococcus faecium DO]
 gi|260559031|ref|ZP_05831217.1| phage integrase [Enterococcus faecium C68]
 gi|261207565|ref|ZP_05922250.1| phage integrase [Enterococcus faecium TC 6]
 gi|289565077|ref|ZP_06445530.1| tyrosine recombinase XerD [Enterococcus faecium D344SRF]
 gi|293556722|ref|ZP_06675285.1| tyrosine recombinase XerD [Enterococcus faecium E1039]
 gi|293563380|ref|ZP_06677829.1| tyrosine recombinase XerD [Enterococcus faecium E1162]
 gi|293568038|ref|ZP_06679376.1| tyrosine recombinase XerD [Enterococcus faecium E1071]
 gi|294614864|ref|ZP_06694759.1| tyrosine recombinase XerD [Enterococcus faecium E1636]
 gi|294618694|ref|ZP_06698228.1| tyrosine recombinase XerD [Enterococcus faecium E1679]
 gi|294622985|ref|ZP_06701875.1| tyrosine recombinase XerD [Enterococcus faecium U0317]
 gi|257812208|gb|EEV40966.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257816892|gb|EEV44220.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257820737|gb|EEV47885.1| phage integrase [Enterococcus faecium 1,231,501]
 gi|257826181|gb|EEV52807.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|260074788|gb|EEW63104.1| phage integrase [Enterococcus faecium C68]
 gi|260077948|gb|EEW65654.1| phage integrase [Enterococcus faecium TC 6]
 gi|289163084|gb|EFD10931.1| tyrosine recombinase XerD [Enterococcus faecium D344SRF]
 gi|291589259|gb|EFF21069.1| tyrosine recombinase XerD [Enterococcus faecium E1071]
 gi|291592326|gb|EFF23940.1| tyrosine recombinase XerD [Enterococcus faecium E1636]
 gi|291595077|gb|EFF26420.1| tyrosine recombinase XerD [Enterococcus faecium E1679]
 gi|291597613|gb|EFF28774.1| tyrosine recombinase XerD [Enterococcus faecium U0317]
 gi|291601054|gb|EFF31343.1| tyrosine recombinase XerD [Enterococcus faecium E1039]
 gi|291604641|gb|EFF34126.1| tyrosine recombinase XerD [Enterococcus faecium E1162]
          Length = 295

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 100/309 (32%), Positives = 162/309 (52%), Gaps = 15/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++  ++L  L IERGLS  T QSYE D  Q+L FL     ++  I + + +    +  
Sbjct: 1   MKEQINDYLHYLNIERGLSANTRQSYERDLEQYLHFL-----QEQKIASWQDVDRFLVIR 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+ K   +K    ++ R +S ++ F ++L++ +IT    + ++   KK+  LP  L   +
Sbjct: 56  FLEKLHEEKKATATVTRMISSLRRFHQFLRQERITDHDPMQHIDTPKKAQKLPSTLTLTE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++         TK +  R+ AIL ++Y  G+R+SE + L   ++      ++  GK
Sbjct: 116 VEKLIE-----APDTTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           GDK RI+PL     + +  Y D     L  +  ++ +F    GK L+     + ++QL R
Sbjct: 171 GDKERIIPLGDYAIQWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVR 230

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT++  K     M +
Sbjct: 231 EAGIYKEVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR----MTD 286

Query: 313 IYDQTHPSI 321
           +Y Q  P  
Sbjct: 287 VYKQHFPRA 295


>gi|17986431|ref|NP_539065.1| site-specific tyrosine recombinase XerC [Brucella melitensis bv. 1
           str. 16M]
 gi|256045523|ref|ZP_05448406.1| site-specific tyrosine recombinase XerC [Brucella melitensis bv. 1
           str. Rev.1]
 gi|260562833|ref|ZP_05833319.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. 16M]
 gi|265991947|ref|ZP_06104504.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. Rev.1]
 gi|34222942|sp|Q8YJD9|XERC_BRUME RecName: Full=Tyrosine recombinase xerC
 gi|17982026|gb|AAL51329.1| integrase [Brucella melitensis bv. 1 str. 16M]
 gi|260152849|gb|EEW87941.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. 16M]
 gi|263003013|gb|EEZ15306.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. Rev.1]
          Length = 315

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 141/314 (44%), Positives = 195/314 (62%), Gaps = 9/314 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
               +L   R+ WL++L+  R LS  TL +YE DTRQFL FL  +  E  +++ I  L  
Sbjct: 10  PARADLAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRI 69

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++R+F++ RR    G R+L R L+G++S L++L+KR +   +    MR  ++  SLP+ 
Sbjct: 70  ADLRSFLANRRNDGAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKP 129

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQST 187
           L    A  +V         E  WI ARN+A+L LLYGCGLRISEAL L+          +
Sbjct: 130 LTADDARRVVSAD--GQMAEEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARS 187

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           + I GKG K R+VPLLP+V KA+ +Y  LCPFDL+      LFRG +G PL+  + QR +
Sbjct: 188 MTITGKGSKTRLVPLLPAVHKAVAQYRALCPFDLSAGQL--LFRGAKGGPLHAAIIQREM 245

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++LR  LGLP S T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ+YT V+++   
Sbjct: 246 QKLRAGLGLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQR-- 303

Query: 308 DWMMEIYDQTHPSI 321
             ++E+YD+THP  
Sbjct: 304 --LLEVYDKTHPRA 315


>gi|288937766|ref|YP_003441825.1| tyrosine recombinase XerC [Klebsiella variicola At-22]
 gi|288892475|gb|ADC60793.1| tyrosine recombinase XerC [Klebsiella variicola At-22]
          Length = 300

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 85/315 (26%), Positives = 149/315 (47%), Gaps = 17/315 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +    L      +L+ L +ER LS +TL +Y+      +        ++  +++ +Q   
Sbjct: 1   MTDSPLSACVDRFLRYLGVERQLSPITLTNYQRQLDALIA-----LADEAGLKSWQQCDA 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++R+F  + R   +G  SL   LS ++SF  ++  +     +    +   K    LP+ 
Sbjct: 56  AQVRSFAVRSRRAGLGPASLALRLSALRSFFDWMVSQGELAANPAKGIAAPKIPRHLPKN 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++      L+D  L         +  R+ A+L ++YG GLR+SE ++L  +++  +   +
Sbjct: 116 IDVDDVNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVNLDIKHLDLESGEV 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +P+  +    I  + DL    L       LF    GK ++    Q+   
Sbjct: 170 WVMGKGSKERRLPIGRNAVTWIEHWLDLRG--LFGTDDDALFLSKLGKRISARNVQKRFA 227

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++   
Sbjct: 228 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 284

Query: 309 WMMEIYDQTHPSITQ 323
            +  +YD  HP   +
Sbjct: 285 -LASVYDAAHPRAKR 298


>gi|329730857|gb|EGG67235.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           21193]
          Length = 295

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 96/305 (31%), Positives = 157/305 (51%), Gaps = 15/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+ ++IE+GLS  T+ +Y  D +++  ++  +      I  I  +    I   +  
Sbjct: 5   IEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHH-----ISHIDFIDRQLILECLGH 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q    +S+ R +S I+SF ++  + K   +   + + + K    LP  LN  + L L
Sbjct: 60  LIDQGQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLAL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++     T    K    R+  +L LLY  G+R+SE + L  +N+      +R+ GKGDK 
Sbjct: 120 LE-----TPDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKE 174

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVPL  +V + +  Y   + P  L   +   LF  + GKPL+     + I+Q      +
Sbjct: 175 RIVPLGDAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y+Q
Sbjct: 235 KKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYNQ 290

Query: 317 THPSI 321
            HP  
Sbjct: 291 FHPRA 295


>gi|19552635|ref|NP_600637.1| site-specific tyrosine recombinase XerD [Corynebacterium glutamicum
           ATCC 13032]
 gi|62390303|ref|YP_225705.1| site-specific tyrosine recombinase XerD [Corynebacterium glutamicum
           ATCC 13032]
 gi|34222909|sp|Q8NQL5|XERD_CORGL RecName: Full=Tyrosine recombinase xerD
 gi|21324187|dbj|BAB98812.1| Integrase [Corynebacterium glutamicum ATCC 13032]
 gi|41325640|emb|CAF21429.1| INTEGRASE/RECOMBINASE XERD [Corynebacterium glutamicum ATCC 13032]
          Length = 304

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 94/308 (30%), Positives = 145/308 (47%), Gaps = 16/308 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + WL +L +ERGLS  TL +Y  D  ++  +L     E   +  IR ++   + +++   
Sbjct: 8   KTWLTHLAVERGLSANTLSNYRRDVERYCDWL-----EAAGLDDIRDITTAHVESYVKDL 62

Query: 79  RT-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           R      Q +   S  R+L   +   K+             ++        LP  L+  +
Sbjct: 63  RRGIDGQQALSASSAGRALIVARGLHKFALMEGEVAADVAADVSPPAMGRHLPDTLSINE 122

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D +    S     +D R+ A++ LLYG G RISEA+ L   ++ +    LRI GK
Sbjct: 123 VALLIDAIPH--SDIATPVDLRDRALVELLYGTGARISEAIGLAVDDVSEMPEVLRITGK 180

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K RIVP     ++A+ EY       L+      LF   RG PL+       +++    
Sbjct: 181 GSKQRIVPFGSMAQQAVREYLVRARPALSKGKSHALFLNQRGGPLSRQSAWAVLKKTVER 240

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT++      D + E+
Sbjct: 241 AGLDKDISPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTHIT----ADSLREV 296

Query: 314 YDQTHPSI 321
           +   HP  
Sbjct: 297 WRGAHPRA 304


>gi|15838084|ref|NP_298772.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa 9a5c]
 gi|34223079|sp|Q9PD96|XERC_XYLFA RecName: Full=Tyrosine recombinase xerC
 gi|9106507|gb|AAF84292.1|AE003977_15 site-specific recombinase [Xylella fastidiosa 9a5c]
          Length = 294

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 89/313 (28%), Positives = 152/313 (48%), Gaps = 19/313 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +   ++   L +ERG+S  TL +Y  D    + +       +  +  +  L   +++A
Sbjct: 1   MSRLVDDFFAFLHVERGMSAHTLDAYRRDIGALIAW-----GVQQAVGEVVALDRAQLQA 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F++    + +  +SL+R LS  + F  +L KR     +    +R  K    LPR L+  +
Sbjct: 56  FVAAEHRRGLSAKSLQRRLSACRGFYAWLVKRGHIAINPAAGLRAPKALRKLPRILDADE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           A++ V             +  R+ A+L L Y  GLR+SE   L    +  D   + + GK
Sbjct: 116 AVSFVQIP------TDTPLGLRDRALLELFYSSGLRLSELCGLRWGGVDLDAGLVSVLGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G + R+VP+      A+ E+            Q P+F G  G P++    Q  I+QL + 
Sbjct: 170 GSRQRVVPVGSYALSALREW----CASSGGGAQQPVFPGRYGGPISARAVQVRIKQLAQR 225

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+      H LRHSFA+HLL + GDLR +Q +LGH  ++TTQIYT+++ +    ++ ++
Sbjct: 226 QGMAKHVHPHMLRHSFASHLLESSGDLRGVQELLGHADITTTQIYTHLDFQ----YLSKV 281

Query: 314 YDQTHPSITQKDK 326
           YD  HP   +K +
Sbjct: 282 YDAAHPRARRKAR 294


>gi|313884218|ref|ZP_07817984.1| tyrosine recombinase XerD [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620665|gb|EFR32088.1| tyrosine recombinase XerD [Eremococcus coleocola ACS-139-V-Col8]
          Length = 301

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 83/303 (27%), Positives = 147/303 (48%), Gaps = 15/303 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L+ L I++GLS+ T+ +YE D ++F  F      +      + Q+    +R FI+   
Sbjct: 13  DFLRFLAIDKGLSQNTIANYELDLKKFFRFCQIQNMDL-----LSQIDTDLVRLFIASLN 67

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  +  R LS +++F  +L    + +++ +  + + KK+ +LP +L+  +   ++ 
Sbjct: 68  KAGYAASTAARILSSLRAFFHFLMVEGVVSKNPMALIESPKKARTLPHSLSMAEVEAIL- 126

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                  +       R+ A+   LY  GLR+SE  +L+  ++  D   ++  GKG+K R+
Sbjct: 127 ----AAPNTDTKFGIRDRAMFETLYATGLRVSELANLSLGDLHLDLRFIQTLGKGNKERM 182

Query: 200 VPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VPL       I +Y   +    L       LF   RGK        + + +     G+  
Sbjct: 183 VPLGEEAVFWIEKYLDQVRDGWLPKAGSDYLFLTQRGKAFTRQGIWKTLNKYVSLAGIQK 242

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRHSFATH+L NG DLR +Q +LGH  +STTQIYT+++       + E+Y ++ 
Sbjct: 243 KVSPHVLRHSFATHILENGADLRLVQELLGHENISTTQIYTHIS----HYRLQEVYRKSF 298

Query: 319 PSI 321
           P  
Sbjct: 299 PGA 301


>gi|229117317|ref|ZP_04246695.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-3]
 gi|228666217|gb|EEL21681.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-3]
          Length = 302

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 157/309 (50%), Gaps = 17/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R ++
Sbjct: 8   KLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYL 62

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +K+  +S+ R +S ++S  ++L +     ++        KK  S+P+ L  ++  
Sbjct: 63  TTLHDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELE 122

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L +   + T      +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG 
Sbjct: 123 ELFEVSDMETP-----LGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGK 177

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K R +P     + A++ Y +     L    +     +F   +G PL     +  + +L +
Sbjct: 178 KQRYIPFGSYAQDALITYMENGRKQLANKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIK 237

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +     +  
Sbjct: 238 KASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER----LRS 293

Query: 313 IYDQTHPSI 321
           +Y + HP  
Sbjct: 294 VYMKHHPRA 302


>gi|126733327|ref|ZP_01749074.1| tyrosine recombinase [Roseobacter sp. CCS2]
 gi|126716193|gb|EBA13057.1| tyrosine recombinase [Roseobacter sp. CCS2]
          Length = 304

 Score =  272 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 125/313 (39%), Positives = 187/313 (59%), Gaps = 9/313 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +++  L      WL       G ++ TL++Y+ D   FL F+  Y  E   +  I +++ 
Sbjct: 1   MIAPALSDALGAWLAGQRALAGTAENTLKAYQTDVMGFLAFMTQYNGESQGLAPIARVTV 60

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++RA+++  R + IG RSL RSLS +KSF ++L +R+    + +L+ R  K    LPR 
Sbjct: 61  RDMRAWMAHERGRGIGARSLARSLSAVKSFYRWLAEREGFEPTAVLSTRAPKFQRKLPRP 120

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L    A  ++D V L  +    W+ AR++A++ LLYGCGLRISEAL LT  ++   +  L
Sbjct: 121 LEVNAASAMIDTVELQANEP--WVAARDAAVVTLLYGCGLRISEALGLTSVDVPLPE-VL 177

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKG K RIVP++   R+A+  Y  LCP+ +  +   P+FR +RG  L+P   Q+ + 
Sbjct: 178 RIVGKGGKERIVPVIAEAREAVATYVRLCPYPVAQDQ--PIFRAVRGGILSPRAIQKVME 235

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           Q R  LGLP + T H +RHSFATHLL+ GGDLR+IQ +LGH  LSTTQ YT V++ +   
Sbjct: 236 QARLQLGLPATATPHAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYTAVDAAH--- 292

Query: 309 WMMEIYDQTHPSI 321
            +M +Y++ HP  
Sbjct: 293 -LMSVYEKAHPKA 304


>gi|15598933|ref|NP_252427.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa
           PAO1]
 gi|107103253|ref|ZP_01367171.1| hypothetical protein PaerPA_01004322 [Pseudomonas aeruginosa PACS2]
 gi|116051736|ref|YP_789425.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218889984|ref|YP_002438848.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa
           LESB58]
 gi|254236648|ref|ZP_04929971.1| integrase/recombinase XerD [Pseudomonas aeruginosa C3719]
 gi|254242429|ref|ZP_04935751.1| integrase/recombinase XerD [Pseudomonas aeruginosa 2192]
 gi|296387753|ref|ZP_06877228.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa
           PAb1]
 gi|313109145|ref|ZP_07795116.1| integrase/recombinase XerD [Pseudomonas aeruginosa 39016]
 gi|34223067|sp|Q9HXQ6|XERD_PSEAE RecName: Full=Tyrosine recombinase xerD
 gi|9949906|gb|AAG07125.1|AE004793_2 integrase/recombinase XerD [Pseudomonas aeruginosa PAO1]
 gi|115586957|gb|ABJ12972.1| integrase/recombinase XerD [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126168579|gb|EAZ54090.1| integrase/recombinase XerD [Pseudomonas aeruginosa C3719]
 gi|126195807|gb|EAZ59870.1| integrase/recombinase XerD [Pseudomonas aeruginosa 2192]
 gi|218770207|emb|CAW25969.1| integrase/recombinase XerD [Pseudomonas aeruginosa LESB58]
 gi|310881618|gb|EFQ40212.1| integrase/recombinase XerD [Pseudomonas aeruginosa 39016]
          Length = 298

 Score =  272 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GL+  T ++Y  D +QF  +L            +  +    I   ++ 
Sbjct: 9   IDRFLDALWLEKGLADNTREAYRNDLQQFNAWLDGRGLR------LEGIGRDAILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  Q    RS  R LSG++ F +Y  +  +  E   L +   +    LP++L+E     L
Sbjct: 63  RLEQGYKARSTARFLSGLRGFYRYCLRDGLIAEDPTLQVDLPQLGKPLPKSLSEADVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +             +  R+  +L +LY CGLR+SE + LT + +   Q  +++ GKG K 
Sbjct: 123 L-----AAPEVDDPLGLRDRTMLEVLYACGLRVSELVGLTLEQVNLRQGVVKVFGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       +  Y      DL        LF  +RG+ +    F   I+   +   +
Sbjct: 178 RLVPLGEEAIGWLERYLREARGDLLGGRPSDVLFPSLRGEQMTRQTFWHRIKHHAQVAAI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT++        + +++ +
Sbjct: 238 GTSISPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHI----ARARLQDLHAR 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|289550729|ref|YP_003471633.1| Site-specific recombinase XerD [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180261|gb|ADC87506.1| Site-specific recombinase XerD [Staphylococcus lugdunensis
           HKU09-01]
          Length = 295

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 96/305 (31%), Positives = 156/305 (51%), Gaps = 15/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+ ++IE+GLS  T+ +Y  D  ++ ++L     E   I+ I  +    I+  +  
Sbjct: 5   IEEYLKFIQIEKGLSPNTIGAYRRDLDKYKLYL-----ETRHIEHIDFIDRQTIQECLGY 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q    +SL R +S I+SF ++  + K   +   + +   K    LP  L   + + L
Sbjct: 60  LIDQGSSAKSLARFISTIRSFHQFALREKYAAKDPTVLLETPKYEKKLPDVLEIDEVVRL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++         +K    R+  IL L+Y  G+R+SE + +  +NI      +R+ GKGDK 
Sbjct: 120 LE-----APDLSKKNGYRDRTILELMYATGMRVSELVHIEIENINVIMGFVRVFGKGDKE 174

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RI+PL  +V   +  Y   + P  L   +   LF  + GKPL+     + I+Q      +
Sbjct: 175 RIIPLGDTVIDYLKTYMKEIRPQLLKSTVTNVLFLNMHGKPLSRQGIWKMIKQYGIKSNI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + +IY+Q
Sbjct: 235 TKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKAQ----IRQIYNQ 290

Query: 317 THPSI 321
            HP  
Sbjct: 291 YHPRA 295


>gi|253699136|ref|YP_003020325.1| tyrosine recombinase XerC [Geobacter sp. M21]
 gi|251773986|gb|ACT16567.1| tyrosine recombinase XerC [Geobacter sp. M21]
          Length = 293

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 97/310 (31%), Positives = 144/310 (46%), Gaps = 17/310 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  E + +   LE ER +S  TL +Y  D  QFL FLA   EE        ++ +  IR 
Sbjct: 1   MKAELEQFYSYLETERNVSPHTLAAYRSDLEQFLSFLAKEREEPRA----EEVDHLAIRR 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++++   +     S+ R LS I++  +YL +     ++    +   K+   LP  LN  Q
Sbjct: 57  YLAQLH-KGCAKSSIGRKLSAIRALYRYLMREGKLEKNPAELVSTPKREKRLPFHLNIDQ 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              LV             +  R+ AIL  LY CG+R+SE   +   ++       R+ GK
Sbjct: 116 VSALV-----TAPAGGSELPLRDRAILETLYSCGIRVSELTGMNVGDMDLAAGLARVMGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R+VP+      A+  Y        +     PL    RG  L      R +      
Sbjct: 171 GGKERLVPVGSCAGSALAAYLAER---ADPGPAEPLILNARGGRLTRRSVARIVDAHMLM 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +      + HTLRH+FATHLL  G DLR+IQ +LGH  LSTTQ YT+V+     D +ME+
Sbjct: 228 IATMRKVSPHTLRHTFATHLLEGGADLRAIQELLGHASLSTTQKYTHVS----IDKLMEV 283

Query: 314 YDQTHPSITQ 323
           YD++HP   +
Sbjct: 284 YDKSHPKARK 293


>gi|91202903|emb|CAJ72542.1| similar to site-specific tyrosine recombinase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 298

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 144/304 (47%), Gaps = 19/304 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  +E +R  S  TL++Y  D  Q+L FL     +      +  ++  ++R +++ 
Sbjct: 14  IDRYLAYIENDRNYSPQTLRAYRNDLGQYLSFL-----KGEGCTDLAGVTRLQLRKYLAF 68

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            + +     ++ R L+ I+S  K+L +  I   + +  ++  K    LP  ++       
Sbjct: 69  LKKKNPSKTTVARKLASIRSLYKFLCQHGILEYNPVEQIKTPKTDKKLPGFMSVNDTE-- 126

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
              +LL+          R+ AI+  LY  G+R+SE + +   +I      ++++GKG K 
Sbjct: 127 ---ILLNQPDTCNLSGLRDKAIMETLYSTGMRVSELVGINIADIDFHSGIVKVRGKGSKE 183

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RI+P+      AI  Y +    D        LF       L      R I +  +   + 
Sbjct: 184 RILPVGNHALNAIQLYLEKRKAD-----NEALFLNKFHGRLTERSVARMIEKYMKKAAMH 238

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           L  + HT RHSFATHLL NG DLR++Q  LGH  LSTTQIYT+V ++     + ++YD+T
Sbjct: 239 LRVSPHTFRHSFATHLLDNGADLRAVQEFLGHSSLSTTQIYTHVTTER----LKQVYDKT 294

Query: 318 HPSI 321
           HP  
Sbjct: 295 HPRA 298


>gi|15642416|ref|NP_232049.1| site-specific tyrosine recombinase XerD [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121587637|ref|ZP_01677401.1| tyrosine recombinase XerD [Vibrio cholerae 2740-80]
 gi|121728363|ref|ZP_01681392.1| tyrosine recombinase XerD [Vibrio cholerae V52]
 gi|147673043|ref|YP_001217919.1| site-specific tyrosine recombinase XerD [Vibrio cholerae O395]
 gi|153802800|ref|ZP_01957386.1| tyrosine recombinase XerD [Vibrio cholerae MZO-3]
 gi|153818418|ref|ZP_01971085.1| tyrosine recombinase XerD [Vibrio cholerae NCTC 8457]
 gi|153822226|ref|ZP_01974893.1| tyrosine recombinase XerD [Vibrio cholerae B33]
 gi|153826869|ref|ZP_01979536.1| tyrosine recombinase XerD [Vibrio cholerae MZO-2]
 gi|227082540|ref|YP_002811091.1| integrase/recombinase XerD [Vibrio cholerae M66-2]
 gi|229507521|ref|ZP_04397026.1| tyrosine recombinase XerD [Vibrio cholerae BX 330286]
 gi|229512283|ref|ZP_04401762.1| tyrosine recombinase XerD [Vibrio cholerae B33]
 gi|229514045|ref|ZP_04403507.1| tyrosine recombinase XerD [Vibrio cholerae TMA 21]
 gi|229519419|ref|ZP_04408862.1| tyrosine recombinase XerD [Vibrio cholerae RC9]
 gi|229521248|ref|ZP_04410668.1| tyrosine recombinase XerD [Vibrio cholerae TM 11079-80]
 gi|229528596|ref|ZP_04417986.1| tyrosine recombinase XerD [Vibrio cholerae 12129(1)]
 gi|229607027|ref|YP_002877675.1| site-specific tyrosine recombinase XerD [Vibrio cholerae MJ-1236]
 gi|254226633|ref|ZP_04920213.1| tyrosine recombinase XerD [Vibrio cholerae V51]
 gi|254291785|ref|ZP_04962570.1| tyrosine recombinase XerD [Vibrio cholerae AM-19226]
 gi|254849542|ref|ZP_05238892.1| tyrosine recombinase XerD [Vibrio cholerae MO10]
 gi|255746910|ref|ZP_05420855.1| site-specific recombinase XerD [Vibrio cholera CIRS 101]
 gi|262161547|ref|ZP_06030657.1| site-specific recombinase XerD [Vibrio cholerae INDRE 91/1]
 gi|262168398|ref|ZP_06036095.1| site-specific recombinase XerD [Vibrio cholerae RC27]
 gi|262190652|ref|ZP_06048886.1| site-specific recombinase XerD [Vibrio cholerae CT 5369-93]
 gi|297581043|ref|ZP_06942968.1| tyrosine recombinase xerD [Vibrio cholerae RC385]
 gi|298500223|ref|ZP_07010028.1| tyrosine recombinase XerD [Vibrio cholerae MAK 757]
 gi|34223076|sp|Q9KPE9|XERD_VIBCH RecName: Full=Tyrosine recombinase xerD
 gi|9656993|gb|AAF95562.1| integrase/recombinase XerD [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121548147|gb|EAX58220.1| tyrosine recombinase XerD [Vibrio cholerae 2740-80]
 gi|121629354|gb|EAX61785.1| tyrosine recombinase XerD [Vibrio cholerae V52]
 gi|124121665|gb|EAY40408.1| tyrosine recombinase XerD [Vibrio cholerae MZO-3]
 gi|125620852|gb|EAZ49206.1| tyrosine recombinase XerD [Vibrio cholerae V51]
 gi|126511051|gb|EAZ73645.1| tyrosine recombinase XerD [Vibrio cholerae NCTC 8457]
 gi|126520236|gb|EAZ77459.1| tyrosine recombinase XerD [Vibrio cholerae B33]
 gi|146314926|gb|ABQ19465.1| tyrosine recombinase XerD [Vibrio cholerae O395]
 gi|149739285|gb|EDM53541.1| tyrosine recombinase XerD [Vibrio cholerae MZO-2]
 gi|150422297|gb|EDN14259.1| tyrosine recombinase XerD [Vibrio cholerae AM-19226]
 gi|227010428|gb|ACP06640.1| integrase/recombinase XerD [Vibrio cholerae M66-2]
 gi|227014311|gb|ACP10521.1| integrase/recombinase XerD [Vibrio cholerae O395]
 gi|229332370|gb|EEN97856.1| tyrosine recombinase XerD [Vibrio cholerae 12129(1)]
 gi|229341780|gb|EEO06782.1| tyrosine recombinase XerD [Vibrio cholerae TM 11079-80]
 gi|229344108|gb|EEO09083.1| tyrosine recombinase XerD [Vibrio cholerae RC9]
 gi|229349226|gb|EEO14183.1| tyrosine recombinase XerD [Vibrio cholerae TMA 21]
 gi|229352248|gb|EEO17189.1| tyrosine recombinase XerD [Vibrio cholerae B33]
 gi|229355026|gb|EEO19947.1| tyrosine recombinase XerD [Vibrio cholerae BX 330286]
 gi|229369682|gb|ACQ60105.1| tyrosine recombinase XerD [Vibrio cholerae MJ-1236]
 gi|254845247|gb|EET23661.1| tyrosine recombinase XerD [Vibrio cholerae MO10]
 gi|255735312|gb|EET90712.1| site-specific recombinase XerD [Vibrio cholera CIRS 101]
 gi|262023290|gb|EEY41994.1| site-specific recombinase XerD [Vibrio cholerae RC27]
 gi|262028858|gb|EEY47512.1| site-specific recombinase XerD [Vibrio cholerae INDRE 91/1]
 gi|262033466|gb|EEY51970.1| site-specific recombinase XerD [Vibrio cholerae CT 5369-93]
 gi|297534869|gb|EFH73705.1| tyrosine recombinase xerD [Vibrio cholerae RC385]
 gi|297540916|gb|EFH76970.1| tyrosine recombinase XerD [Vibrio cholerae MAK 757]
 gi|327484912|gb|AEA79319.1| Tyrosine recombinase XerD [Vibrio cholerae LMA3894-4]
          Length = 302

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 150/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  +  ERGL++ T+ SY  D  + L ++A           +  +S+  ++ + S 
Sbjct: 12  VEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYR------LDFISFAGLQEYQSW 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q     S  R LS I+   +YL + K+  +     + + K    LP+ L+E Q   L
Sbjct: 66  LSEQNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEAL 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +             ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG K 
Sbjct: 126 L-----SAPDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKE 180

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +  + I  +        L       +F   RG+ +    F   I+      G+
Sbjct: 181 RLVPMGENAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGI 240

Query: 257 PL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            +   + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + ++++
Sbjct: 241 DVEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHN 296

Query: 316 QTHPSI 321
           + HP  
Sbjct: 297 EHHPRA 302


>gi|242373798|ref|ZP_04819372.1| tyrosine recombinase XerD [Staphylococcus epidermidis M23864:W1]
 gi|242348535|gb|EES40137.1| tyrosine recombinase XerD [Staphylococcus epidermidis M23864:W1]
          Length = 295

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 96/305 (31%), Positives = 156/305 (51%), Gaps = 15/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  ++IE+GLS  T+ +Y  D  ++  +L     E+  I  I  +    I+  +  
Sbjct: 5   IEEYLNFIQIEKGLSSNTIGAYRRDLNKYKTYL-----EERKITHIDFVDRQVIQECLGH 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                   +SL R +S I+SF ++  + K   +   + +   K    LP  L  ++ L L
Sbjct: 60  LIDLGQSSKSLARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEVQEVLDL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++     T   TK    R+  +L LLY  G+R+SE + L  +++      +R+ GKG+K 
Sbjct: 120 LE-----TPDLTKNNGYRDRTMLELLYATGMRVSEIIQLEVEDVNLMMGFVRVFGKGNKE 174

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVPL  +V + +  Y   + P  L   +   LF  + GKPL+     + I+Q      +
Sbjct: 175 RIVPLGDAVIEYLTTYIETVRPQLLKQTVTHVLFLNMHGKPLSRQGIWKMIKQNGIKANI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y+Q
Sbjct: 235 NKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYNQ 290

Query: 317 THPSI 321
            HP  
Sbjct: 291 FHPRA 295


>gi|167032086|ref|YP_001667317.1| site-specific tyrosine recombinase XerD [Pseudomonas putida GB-1]
 gi|166858574|gb|ABY96981.1| tyrosine recombinase XerD [Pseudomonas putida GB-1]
          Length = 298

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 96/304 (31%), Positives = 145/304 (47%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GLS  T  SY  D   F  +L           ++       I   ++ 
Sbjct: 9   IDQFLDALWLEKGLSDNTRVSYRSDLALFNGWLQEQ------AVSLPDAGRELILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  Q    RS  R LSG++ F +YL + ++      L +   +    LP++L+E     L
Sbjct: 63  RLDQGYKPRSTARFLSGLRGFFRYLLRERLVAIDPTLQVDMPQLGKPLPKSLSEADVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +           + I  R+ A+L +LY CGLR++E +SLT   +   Q  LR+ GKG K 
Sbjct: 123 L-----QAPDLGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y      +L N      LF  +RG+ +    F   I+   R  G+
Sbjct: 178 RLVPMGEEAVVWLERYQRDGRAELLNGRPSDVLFPSLRGEQMTRQTFWHRIKHHARVAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + +++ Q
Sbjct: 238 DKPLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR----LQQLHAQ 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|188534907|ref|YP_001908704.1| Tyrosine recombinase XerD [Erwinia tasmaniensis Et1/99]
 gi|188029949|emb|CAO97833.1| Tyrosine recombinase XerD [Erwinia tasmaniensis Et1/99]
          Length = 297

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 98/306 (32%), Positives = 153/306 (50%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L IER L++ T+ SY  D R    +LA      +  Q I      ++RAF+++
Sbjct: 7   IEQFLDALWIERNLAQNTVASYRLDLRSLCDWLACQPLSLLNAQAI------DLRAFLAQ 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q   L
Sbjct: 61  RLEGGYKASSSARLLSAMRRLFQYLYREKLREDDPSALLSSPKLPQRLPKDLSEAQVERL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           + +  L        I+ R+ A+L LLY  GLR++E + LT  +I   Q  +R+ GKG+K 
Sbjct: 121 LQSPCLEQP-----IELRDKAMLELLYATGLRVTELVGLTLSDISLRQGVVRVLGKGNKE 175

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       I ++     P+ LN      LF   R K +    F   I+      G+
Sbjct: 176 RLVPMGEEAVHWIEQFIEYGRPWLLNGQTLDVLFPSNRAKQMTRQTFWHRIKHYATLAGI 235

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 236 DSDKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 291

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 292 QHHPRA 297


>gi|332637865|ref|ZP_08416728.1| site-specific recombinase XerD [Weissella cibaria KACC 11862]
          Length = 303

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 93/303 (30%), Positives = 144/303 (47%), Gaps = 14/303 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L +ERGLS  T  SY  D   F  +L     +K     + Q+    I AF+ +  
Sbjct: 14  DYLHYLTVERGLSANTRTSYRQDLTHFFTYL----IDKEKSLPLTQVDRFTIMAFLGEME 69

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           TQ     S+   +S ++ F ++      TT   +  +   KK+  LP  L   +   L+ 
Sbjct: 70  TQGKSRNSVIHMVSTLRKFFQFATDSGWTTTDPMTQVDPPKKAQHLPAVLTLSEVEALL- 128

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                       +  RN  +L ++Y  GLR+SE ++L   N+  D   ++  GKGDK RI
Sbjct: 129 ----AVPDTNTTLGLRNRTMLEVMYATGLRVSELVNLRLDNLHLDLGLIQTIGKGDKERI 184

Query: 200 VPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +P+       +  Y  D  PF      +  +F    G  L      + I+Q     G+  
Sbjct: 185 IPIGDVATHWLQRYLADGRPFLGRQQDEQVIFLNDHGHQLTRQGVWKLIKQWVIAAGITK 244

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HTLRHSFATH+L NG DLR +Q +LGH  +STTQIYT++++K     + E+Y ++H
Sbjct: 245 DVSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISNKR----LTEVYQKSH 300

Query: 319 PSI 321
           P  
Sbjct: 301 PRA 303


>gi|115522315|ref|YP_779226.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris
           BisA53]
 gi|115516262|gb|ABJ04246.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris
           BisA53]
          Length = 342

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 126/314 (40%), Positives = 185/314 (58%), Gaps = 8/314 (2%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            S +L  E   WL +L  ER LS  TL++Y  D RQFL FL  +   ++++    +L   
Sbjct: 35  ASKDLTAEIVRWLGHLRAERRLSPKTLEAYARDLRQFLGFLCEHWGTQVSVARFAKLEAG 94

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++RAF++ RR   IG RSL R+L+G++SF ++L++        +  +R  K   +LP+ +
Sbjct: 95  DVRAFMASRRADAIGGRSLMRALAGLRSFGRFLEREGKGKVGALSAIRAPKVGKTLPKPI 154

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--DQST 187
               A  L D           WI  R++A++ LLYG GLRISEAL L  +++       T
Sbjct: 155 QIASAKRLTDPDERAGEERENWILVRDAAVMALLYGSGLRISEALGLKRRDVPLPGQGDT 214

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           L + GKG+K R+VP+L SV +++ +Y  +CP  L  +    +F G RG PL+P + Q  +
Sbjct: 215 LIVTGKGNKTRMVPVLQSVLQSVADYVAICPHPLAADR--AIFVGARGGPLSPRIIQLTM 272

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            ++R  LGLP S T H LRHSFATHLLS GG+LR+IQ +LGH  LSTTQIYT ++S+   
Sbjct: 273 ERMRGALGLPDSATPHALRHSFATHLLSRGGELRAIQELLGHASLSTTQIYTGIDSER-- 330

Query: 308 DWMMEIYDQTHPSI 321
             ++E+Y   HP  
Sbjct: 331 --LLEVYATAHPRA 342


>gi|323439501|gb|EGA97222.1| site-specific recombinase [Staphylococcus aureus O11]
 gi|323441531|gb|EGA99182.1| site-specific recombinase [Staphylococcus aureus O46]
          Length = 295

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 95/305 (31%), Positives = 158/305 (51%), Gaps = 15/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+ ++IE+GLS  T+ +Y  D +++  ++  +      I  I  +    I+  +  
Sbjct: 5   IEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHH-----ISHIDFIDRQLIQECLGH 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q    +S+ R +S I+SF ++  + K   +   + + + K    LP  LN  + L L
Sbjct: 60  LIDQGQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLAL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++     T    K    R+  +L LLY  G+R+SE + L  +++      +R+ GKGDK 
Sbjct: 120 LE-----TPDLNKINGYRDRTMLELLYATGMRVSELIHLELEHVNLIMGFVRVFGKGDKE 174

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVPL  +V + +  Y   + P  L   +   LF  + GKPL+     + I+Q      +
Sbjct: 175 RIVPLGDTVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y+Q
Sbjct: 235 KKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYNQ 290

Query: 317 THPSI 321
            HP  
Sbjct: 291 FHPRA 295


>gi|239636836|ref|ZP_04677835.1| tyrosine recombinase XerD [Staphylococcus warneri L37603]
 gi|239597510|gb|EEQ80008.1| tyrosine recombinase XerD [Staphylococcus warneri L37603]
          Length = 295

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 153/305 (50%), Gaps = 15/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+ ++IE+GLS  T+ +Y  D  ++  +L     +   I  I  +    I+  +  
Sbjct: 5   IEEYLKFIQIEKGLSVNTIGAYRRDLNKYKEYL-----DLQKISNIDFVDRQTIQECLGY 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q    +S+ R +S I+SF ++  + K   +   + +   K    LP  L   + + L
Sbjct: 60  LIDQGQSSKSIARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEVDEVIDL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +     +     K    R+  +L LLY  G+R+SE + +  +++      +R+ GKGDK 
Sbjct: 120 L-----NAPDLNKNNGYRDRTMLELLYATGMRVSEVIQIEVEDVNLMMGFVRVFGKGDKE 174

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVPL  +V   +  Y   + P  L   +   LF  + GKPL+     + ++Q      +
Sbjct: 175 RIVPLSDTVIDYLTTYIETVRPQLLKQTVTNVLFLNMHGKPLSRQGIWKMMKQNGLKANI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y+Q
Sbjct: 235 NKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYNQ 290

Query: 317 THPSI 321
            HP  
Sbjct: 291 YHPRA 295


>gi|282916763|ref|ZP_06324521.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           D139]
 gi|283770568|ref|ZP_06343460.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus H19]
 gi|282319250|gb|EFB49602.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           D139]
 gi|283460715|gb|EFC07805.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus H19]
 gi|302333169|gb|ADL23362.1| site-specific recombinase XerD [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 295

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 95/305 (31%), Positives = 158/305 (51%), Gaps = 15/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+ ++IE+GLS  T+ +Y  D +++  ++  +      I  I  +    I+  +  
Sbjct: 5   IEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHH-----ISHIDFIDRQLIQECLGH 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q    +S+ R +S I+SF ++  + K   +   + + + K    LP  LN  + L L
Sbjct: 60  LIDQGQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLAL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++     T    K    R+  +L LLY  G+R+SE + L  +++      +R+ GKGDK 
Sbjct: 120 LE-----TPDLNKINGYRDRTMLELLYATGMRVSELIHLELEHVNLIMGFVRVFGKGDKE 174

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVPL  +V + +  Y   + P  L   +   LF  + GKPL+     + I+Q      +
Sbjct: 175 RIVPLGDAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y+Q
Sbjct: 235 KKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYNQ 290

Query: 317 THPSI 321
            HP  
Sbjct: 291 FHPRA 295


>gi|227549328|ref|ZP_03979377.1| site-specific tyrosine recombinase XerD [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078647|gb|EEI16610.1| site-specific tyrosine recombinase XerD [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 301

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 92/313 (29%), Positives = 142/313 (45%), Gaps = 19/313 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL+    WL +L +ERG++  TL +Y  D  +++ +L     E   I  +  +S   + A
Sbjct: 3   LLQVATMWLDHLAVERGVAANTLSNYRRDVERYIAWL-----EAAGISRLDDVSTNHVEA 57

Query: 74  FISKRR-----TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           +++  R      + +   S  R+L   +   K+     +T       +        LP  
Sbjct: 58  YVADLRRGVGRAKPLSASSAGRALVVARGLHKFAVAEGLTQADVASAVAPPSAGEKLPDT 117

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+  +   L+D     T       D R+ A+L +LY  G R+SE L L   ++  D   L
Sbjct: 118 LSIDEVARLLDACPTRTP-----CDLRDKALLEVLYATGARVSEVLGLVVDDVASDADVL 172

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R+VPL    R+A+  Y       L       LF   RG  L+       I+
Sbjct: 173 TVTGKGSKQRLVPLGSHAREAVDAYLVRGRPVLAKGSTYALFLNRRGTALSRQSAWGIIK 232

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                 GL    + HTLRHSFATHLL  G D+R++Q +LGH  ++TTQIYT++      D
Sbjct: 233 DAAERAGLAKDISPHTLRHSFATHLLEGGADVRTVQELLGHASVTTTQIYTHIT----AD 288

Query: 309 WMMEIYDQTHPSI 321
            + E++   HP  
Sbjct: 289 NLREVWRMAHPRA 301


>gi|323701841|ref|ZP_08113511.1| tyrosine recombinase XerC [Desulfotomaculum nigrificans DSM 574]
 gi|323533145|gb|EGB23014.1| tyrosine recombinase XerC [Desulfotomaculum nigrificans DSM 574]
          Length = 300

 Score =  272 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 154/305 (50%), Gaps = 10/305 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             +++  L++++  S  T+++Y+ D  + + F +             Q+     R F+S 
Sbjct: 5   VDHFINFLKVQKNFSDHTIEAYQKDLFEGIDFFSTVLNVCDEKLHPSQIDSRLFRNFLSH 64

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            + + +   ++ R L+  ++F ++L +  +   + +L M N K+   LP+ L + +A  L
Sbjct: 65  MQERNLQRSTIARRLAAWRTFFRFLYREGLVQTNPLLRMANPKQEKRLPKFLYQDEAKEL 124

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           V+      S     +  R+ ++L LLY  G+R+SE ++L   ++   +  LR+ GKG K 
Sbjct: 125 VE------SPGNTPLGVRDRSLLELLYATGIRVSELVALDLYHLDLSRGYLRVWGKGSKE 178

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VP+      A+  Y       L       +F   +G  L+    ++ I +  + +GL 
Sbjct: 179 RLVPIHDRAVAALKRYLTEARPKLAQPDCPAVFVNYKGSRLSDRGVRKLIDKYCQQVGLT 238

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + + H +RHSFATHLL NG DLRS+Q +LGH  LSTTQIYT+V  +     + +IY  +
Sbjct: 239 KNISPHVIRHSFATHLLDNGADLRSVQELLGHVSLSTTQIYTHVTKQ----KLKKIYHLS 294

Query: 318 HPSIT 322
           HP   
Sbjct: 295 HPRAK 299


>gi|257063600|ref|YP_003143272.1| tyrosine recombinase XerD [Slackia heliotrinireducens DSM 20476]
 gi|256791253|gb|ACV21923.1| tyrosine recombinase XerD [Slackia heliotrinireducens DSM 20476]
          Length = 309

 Score =  272 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 99/315 (31%), Positives = 152/315 (48%), Gaps = 17/315 (5%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
              L +R ++L  L +ERG S LT+ SY  D   ++ FL      +  +     ++  ++
Sbjct: 9   APFLPDRNDYLAYLSVERGSSSLTVGSYATDLNDYISFLG-----ERGVPDSAAITRDDV 63

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
            A+    R +   D S++R LS +K F ++L    +T  +    +   K  + LP  L+ 
Sbjct: 64  VAYEYDLRRRGYADSSIERHLSALKGFHRFLVGEGVTKGNPADLVSLPKVPDRLPDVLSV 123

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            +   L+D        +   +  R+ A L LLYGCGLR SE +SL   ++   +  LR+ 
Sbjct: 124 SEVNELLDQ-----PFKDGPLGLRDQAALELLYGCGLRASELISLDLGDVFFAEGILRVM 178

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           GKG + RIVP+  S ++ +L+Y +     L         +    RG  L+       +R 
Sbjct: 179 GKGSRERIVPIGGSAQRVLLDYLENGRPKLAKPSKTDGAVILNARGGRLSRQALHTIVRT 238

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
               +G P     HTLRHSFATH+L  G DLR+IQ ILGH  +STTQIY +V+  +    
Sbjct: 239 AGATIGRP-DLHPHTLRHSFATHMLEGGADLRTIQEILGHSDISTTQIYVHVDRSH---- 293

Query: 310 MMEIYDQTHPSITQK 324
           + E Y   HP    K
Sbjct: 294 IREEYLAAHPRAHLK 308


>gi|297617131|ref|YP_003702290.1| tyrosine recombinase XerC [Syntrophothermus lipocalidus DSM 12680]
 gi|297144968|gb|ADI01725.1| tyrosine recombinase XerC [Syntrophothermus lipocalidus DSM 12680]
          Length = 306

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 93/310 (30%), Positives = 150/310 (48%), Gaps = 12/310 (3%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL   + +L++LEIE+G S LTL  Y  D  +F+   A              L    +R 
Sbjct: 5   LLSHVKRFLEHLEIEKGASPLTLAGYRSDLERFVAHFADKRGIGPEEIGFEVLDPRTVRE 64

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++  +   +   ++ R ++ ++SF KYL   +I   + +  +   ++   LPR L  ++
Sbjct: 65  YLAHLQECGLKRSTMARKVAALRSFGKYLCSSQIIEVNPVATVSTPRREKRLPRFLYSQE 124

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L     L        +  R+ AIL LLY  G+R+ E + L   +   ++  +R+ GK
Sbjct: 125 VEAL-----LAAPDGGDVLGLRDQAILELLYATGIRVGELVGLDLPDFDAEERFIRVMGK 179

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQL 250
           G K RIVP+     +A+  Y +     L    Q     +F    G  L+    +  + + 
Sbjct: 180 GSKERIVPVGARAVEAMNRYLNSSRRVLAARKQGTENAIFLNRHGTRLSARGVRNIVNRY 239

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              + L L  + HTLRH+FATHLL+ G DLRS+Q +LGH RLSTTQ+YT+V ++     +
Sbjct: 240 VEEIALRLKISPHTLRHTFATHLLNGGADLRSVQELLGHARLSTTQVYTHVTAER----L 295

Query: 311 MEIYDQTHPS 320
             IYD   P 
Sbjct: 296 KNIYDDKFPR 305


>gi|229524404|ref|ZP_04413809.1| tyrosine recombinase XerD [Vibrio cholerae bv. albensis VL426]
 gi|229337985|gb|EEO03002.1| tyrosine recombinase XerD [Vibrio cholerae bv. albensis VL426]
          Length = 302

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 150/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  +  ERGL++ T+ SY  D  + L ++A           +  +S+  ++ + S 
Sbjct: 12  VEQFLDTMWFERGLAENTVTSYRNDLSKLLEWMAQNQYR------LDFISFAGLQEYQSW 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q     S  R LS I+   +YL + K+  +     + + K    LP+ L+E Q   L
Sbjct: 66  LSEQNYKPTSKARMLSAIRRLFQYLYREKVRADDPSALLISPKLPTRLPKDLSEAQVEAL 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +             ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG K 
Sbjct: 126 L-----SAPDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKE 180

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +  + I  +        L       +F   RG+ +    F   I+      G+
Sbjct: 181 RLVPMGENAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGI 240

Query: 257 PL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            +   + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + ++++
Sbjct: 241 DVEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHN 296

Query: 316 QTHPSI 321
           + HP  
Sbjct: 297 EHHPRA 302


>gi|315658225|ref|ZP_07911097.1| tyrosine recombinase XerD [Staphylococcus lugdunensis M23590]
 gi|315496554|gb|EFU84877.1| tyrosine recombinase XerD [Staphylococcus lugdunensis M23590]
          Length = 295

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 96/305 (31%), Positives = 156/305 (51%), Gaps = 15/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+ ++IE+GLS  T+ +Y  D  ++ ++L     E   I+ I  +    I+  +  
Sbjct: 5   IEEYLKFIQIEKGLSPNTIGAYRRDLDKYKLYL-----ETRHIEHIDFIDRQTIQECLGY 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q    +SL R +S I+SF ++  + K   +   + +   K    LP  L   + + L
Sbjct: 60  LIDQGSSAKSLARFISTIRSFHQFALREKYAAKDPTVLLETPKYEKKLPDVLEIDEVVRL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++         +K    R+  IL L+Y  G+R+SE + +  +NI      +R+ GKGDK 
Sbjct: 120 LE-----APDLSKKNGYRDRTILELMYATGIRVSELVHIEIENINVIMGFVRVFGKGDKE 174

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RI+PL  +V   +  Y   + P  L   +   LF  + GKPL+     + I+Q      +
Sbjct: 175 RIIPLGDTVIDYLKTYMKEIRPQLLKSTVTNVLFLNMHGKPLSRQGIWKMIKQYGIKSNI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + +IY+Q
Sbjct: 235 TKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKAQ----IRQIYNQ 290

Query: 317 THPSI 321
            HP  
Sbjct: 291 YHPRA 295


>gi|73662564|ref|YP_301345.1| site-specific recombinase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|82582339|sp|Q49XU5|XERD_STAS1 RecName: Full=Tyrosine recombinase xerD
 gi|72495079|dbj|BAE18400.1| site-specific recombinase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 295

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 156/305 (51%), Gaps = 15/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+ +++E+GLS  T+ +Y  D +++  FL     E   I  I  +    I+  +  
Sbjct: 5   IEEYLKFIQLEKGLSSNTIGAYRRDLKKYNTFL-----ELQKISHIDFIDRASIQQCLGY 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                   +SL R +S I+SF ++  + K   +   + +   K    LP  L   + L L
Sbjct: 60  LHDNGASAKSLARFISTIRSFHQFALREKYAAKDPTVLIETPKYDRKLPDVLEINEVLAL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++     T +  K    R+  +L LLY  G+R+SE + +  +++      +++ GKG+K 
Sbjct: 120 LE-----TPNLAKINGYRDRTMLELLYATGMRVSELIQIELEDVNLIMGFVKVFGKGNKE 174

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVPL  +V + +  Y   + P  L   +   LF  + GKPL+     + I+Q      +
Sbjct: 175 RIVPLGDTVIEYLKTYIETIRPQLLKKTVTNTLFLNMHGKPLSRQAIWKMIKQNAIKANI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y++
Sbjct: 235 TKSLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYNE 290

Query: 317 THPSI 321
            HP  
Sbjct: 291 FHPRA 295


>gi|270308039|ref|YP_003330097.1| site-specific recombinase [Dehalococcoides sp. VS]
 gi|270153931|gb|ACZ61769.1| site-specific recombinase [Dehalococcoides sp. VS]
          Length = 307

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 90/313 (28%), Positives = 147/313 (46%), Gaps = 15/313 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +    +L+ L +E+ +S  TL++Y  D   F+ +L         + +  ++    +R 
Sbjct: 1   MQENFNKYLEYLSVEKNVSAYTLRNYRTDLIGFVNYLIEKK-----VSSFDRVDRYILRD 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++S    + I   S+ R LS ++SF +YL +  +  ++  LN  + +    LP  L   +
Sbjct: 56  YMSSLIAKGIVKGSIARKLSAVRSFYRYLMREGLIQKNPTLNASSPRLDKRLPEFLTTAE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+          +     R+ A + LLY  GLR+SE + L  +N+      +R+ GK
Sbjct: 116 VSKLLRM-----PDSSTPQGLRDKAFMELLYASGLRVSELVKLDIENLDLHSHQIRVWGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRR 252
           G K RIV +     ++I  Y +L    L      P LF    G  L+   FQ  + +L  
Sbjct: 171 GSKERIVLMGLPAIQSIQTYLNLGRPLLKGKRNTPALFLNPNGGRLSARSFQERLDKLAH 230

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+      H LRH+FATHLL  G DLR +Q +LGH  LSTTQIYT+V          +
Sbjct: 231 QAGIEKHVHPHMLRHTFATHLLDGGADLRVVQELLGHSNLSTTQIYTHVTKSQA----RK 286

Query: 313 IYDQTHPSITQKD 325
           +Y  +HP    ++
Sbjct: 287 VYMSSHPLAKPQN 299


>gi|75763959|ref|ZP_00743586.1| Integrase/recombinase (XerD/RipX family) [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74488552|gb|EAO52141.1| Integrase/recombinase (XerD/RipX family) [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 302

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 87/309 (28%), Positives = 155/309 (50%), Gaps = 17/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R ++
Sbjct: 8   KLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYL 62

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +K+  +S+ R +S ++S  ++L +     ++        KK  S+P+ L  ++  
Sbjct: 63  TTLHDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELE 122

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L +      S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG 
Sbjct: 123 ELFE-----VSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGK 177

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRR 252
           K R +P     + +++ Y +     L          +F   +G PL     +  + +L +
Sbjct: 178 KQRYIPFGSYAQDSLITYIENGRKQLVNKTDEDSRMVFLNAKGTPLTSRGVRYVLNELIK 237

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +     +  
Sbjct: 238 KASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER----LRS 293

Query: 313 IYDQTHPSI 321
           +Y + HP  
Sbjct: 294 VYMKHHPRA 302


>gi|170723312|ref|YP_001751000.1| site-specific tyrosine recombinase XerD [Pseudomonas putida W619]
 gi|169761315|gb|ACA74631.1| tyrosine recombinase XerD [Pseudomonas putida W619]
          Length = 298

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 96/304 (31%), Positives = 143/304 (47%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GLS  T  SY  D   F  +L  +         +       I   ++ 
Sbjct: 9   IDQFLDALWLEKGLSDNTRVSYRSDLALFNGWLQDHG------LALPAAGRELILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  Q    RS  R LSG++ F +YL + K+      L +   +    LP++L+E     L
Sbjct: 63  RLDQGYKPRSTARFLSGLRGFFRYLLREKLIAVDPTLQIEMPQLGKPLPKSLSEADVDAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +           + I  R+ A+L +LY CGLR++E +SL    +   Q  LR+ GKG K 
Sbjct: 123 L-----QAPDLGEAIGQRDRAMLEVLYACGLRVTELVSLALDQVNLRQGVLRVMGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y        LN      LF  +RG+ +    F   I+   R  G+
Sbjct: 178 RLVPMGEEAVLWLERYLRDGRVELLNGRPSDVLFPSLRGEQMTRQTFWHRIKHHARIAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + +++ Q
Sbjct: 238 DKPLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR----LQQLHAQ 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|309807082|ref|ZP_07701061.1| tyrosine recombinase XerD [Lactobacillus iners LactinV 03V1-b]
 gi|309809309|ref|ZP_07703178.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 2503V10-D]
 gi|325911997|ref|ZP_08174399.1| tyrosine recombinase XerD [Lactobacillus iners UPII 143-D]
 gi|325912838|ref|ZP_08175216.1| tyrosine recombinase XerD [Lactobacillus iners UPII 60-B]
 gi|329921320|ref|ZP_08277758.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 1401G]
 gi|308166512|gb|EFO68712.1| tyrosine recombinase XerD [Lactobacillus iners LactinV 03V1-b]
 gi|308170422|gb|EFO72446.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 2503V10-D]
 gi|325476182|gb|EGC79346.1| tyrosine recombinase XerD [Lactobacillus iners UPII 143-D]
 gi|325477831|gb|EGC80965.1| tyrosine recombinase XerD [Lactobacillus iners UPII 60-B]
 gi|328934612|gb|EGG31116.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 1401G]
          Length = 296

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 96/309 (31%), Positives = 163/309 (52%), Gaps = 18/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
              +++L+  +IERGLS  TL SY  D  ++  FL     + + I T  ++    I +F+
Sbjct: 3   DSLEDYLRFAQIERGLSNNTLLSYRQDLLEYFSFL-----KSLGITTW-EVDALIIDSFL 56

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++ R +     S+ R LS ++ F ++L ++ +  +  +L + + KK   LP AL+  +  
Sbjct: 57  AQERDKGKAIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPTALSTTEVT 116

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L++         T  +  R+ AIL  LY  G+R+SE ++L   +I ++   +++ GKG 
Sbjct: 117 KLINM-----PDTTTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGS 171

Query: 196 KIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K R++P+       I +Y           +   +  +F   RG  +      + I++  +
Sbjct: 172 KQRLIPISNVAMSWIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQ 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+  + T HTLRH+FATHLL NG DLR +Q ILGH  +STTQIYTN+  K+    +M+
Sbjct: 232 LAGINKNVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKH----IMD 287

Query: 313 IYDQTHPSI 321
           +Y +THP I
Sbjct: 288 VYKRTHPRI 296


>gi|254508834|ref|ZP_05120944.1| tyrosine recombinase XerD [Vibrio parahaemolyticus 16]
 gi|219548220|gb|EED25235.1| tyrosine recombinase XerD [Vibrio parahaemolyticus 16]
          Length = 298

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 91/306 (29%), Positives = 151/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + +ERGLS+ TL SY  D  + L +++ +         +  +S + ++ + + 
Sbjct: 8   VEQFLDAMWMERGLSENTLASYRNDLSKLLQWMSKHNYR------LDFISLSGLQEYQTW 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S  R LS I+   +YL + KI  +     + + K    LP+ L+E Q   L
Sbjct: 62  LADEGYKQTSRARMLSAIRRLFQYLHREKIRADDPSALLVSPKLPKRLPKDLSEAQVDAL 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D            ++ R+ A+L LLY  GLR++E +SLT +NI   Q  +R+ GKG K 
Sbjct: 122 LD-----APDPNDPMELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKE 176

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +    I  + +      L  N    +F   R + +    F   I+      G+
Sbjct: 177 RLVPMGENAVDWIETFLEQGRSELLGENTSDVVFPSKRARQMTRQTFWHRIKHYAVIAGI 236

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 237 DSEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHS 292

Query: 316 QTHPSI 321
           + HP  
Sbjct: 293 EHHPRA 298


>gi|198244691|ref|YP_002217878.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205354490|ref|YP_002228291.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207859151|ref|YP_002245802.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|197939207|gb|ACH76540.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|205274271|emb|CAR39290.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206710954|emb|CAR35322.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326625666|gb|EGE32011.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326629624|gb|EGE35967.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 300

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 87/315 (27%), Positives = 152/315 (48%), Gaps = 17/315 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +    L ++   +L+ L +ER LS +T+Q+Y+      +         +  +++ +Q   
Sbjct: 1   MTDVALSQDVSRFLRYLGVERQLSPITVQNYQRQLDAIIALAG-----ETGLKSWQQCDA 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R+F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ 
Sbjct: 56  AIVRSFAVRSRRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKN 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++      L+D  L         +  R+ A+L ++YG GLR+SE + L  +++  D   +
Sbjct: 116 IDVDDVNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEV 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +P+  +    I  + DL    L  + +  LF    GK ++    Q+   
Sbjct: 170 WVMGKGSKERRLPIGRNAVTWIEHWLDLRG--LFASDEEALFLSKLGKRISARNVQKRFA 227

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++   
Sbjct: 228 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 284

Query: 309 WMMEIYDQTHPSITQ 323
            +  +YD  HP   +
Sbjct: 285 -LASVYDAAHPRAKR 298


>gi|157372126|ref|YP_001480115.1| site-specific tyrosine recombinase XerD [Serratia proteamaculans
           568]
 gi|157323890|gb|ABV42987.1| tyrosine recombinase XerD [Serratia proteamaculans 568]
          Length = 299

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 90/306 (29%), Positives = 149/306 (48%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L +ER L++ TL SY  D +    +L           ++ Q    +++AF++ 
Sbjct: 9   IEQFLDALWLERNLAENTLASYRLDLQALGAWLNQQN------TSLLQAQALDLQAFLAD 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++   +YL +  + ++     + + K    LP+ L+E Q   L
Sbjct: 63  RVEGGYKATSSARLLSAMRRLFQYLYRENMRSDDPTALLASPKLPQRLPKDLSEAQVDAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +           + ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K 
Sbjct: 123 L-----KAPCVDQPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKE 177

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       I  Y     P+ +N      LF   R + +    F   I+      G+
Sbjct: 178 RLVPLGEEAVYWIENYLEHGRPWMVNGQALDVLFPSNRSQQMTRQTFWHRIKHYAILAGI 237

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 238 DSERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQ 293

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 294 QHHPRA 299


>gi|182680028|ref|YP_001834174.1| integrase family protein [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182635911|gb|ACB96685.1| integrase family protein [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 323

 Score =  271 bits (694), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 133/314 (42%), Positives = 187/314 (59%), Gaps = 7/314 (2%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
                +L    + WL +L  ER +S LT ++Y  D RQFL FLA +     +++T  +L+
Sbjct: 14  APAEADLAGLAEAWLLHLSGERRVSALTAEAYARDLRQFLAFLAEHFGGAPSLETFAELT 73

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
             ++RAF++ RR Q +G RSL R L+G++SF ++L++           +R  K +  LP+
Sbjct: 74  PADLRAFMTARRNQDVGSRSLSRQLAGLRSFARFLEREGKGKALVFSAVRTPKLARHLPK 133

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT-PQNIMDDQS 186
            LN   A  +VD      +    W+ AR++A+L LLYG GLRISEALSLT  +  + +  
Sbjct: 134 PLNPTAACEVVDVANRTDTERPAWVLARDAAVLGLLYGAGLRISEALSLTRREAPIGETD 193

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            L + GKG K R+VP++  VR+ I  Y  LCP+ L    Q PLF G +G PL+P + Q  
Sbjct: 194 ALTVTGKGRKTRMVPIIEPVRRGIESYLALCPYPL--PPQGPLFVGAKGGPLSPRIIQLA 251

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           + Q+R  LGLP S T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ+YT V+S+  
Sbjct: 252 VEQMRGALGLPKSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQLYTAVDSER- 310

Query: 307 GDWMMEIYDQTHPS 320
              ++E Y   HP 
Sbjct: 311 ---LLEAYRSAHPR 321


>gi|85859051|ref|YP_461253.1| integrase/recombinase [Syntrophus aciditrophicus SB]
 gi|85722142|gb|ABC77085.1| integrase/recombinase [Syntrophus aciditrophicus SB]
          Length = 296

 Score =  271 bits (694), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 93/312 (29%), Positives = 165/312 (52%), Gaps = 18/312 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++F+L+ E   +L  L +E+G S  TL++Y  D  ++   +     ++  I+ I ++S  
Sbjct: 1   MNFQLIDE---YLNYLTVEKGASHNTLEAYGRDLSRYSGLI-----QERGIKEIHEISPD 52

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++  ++++ + + +   S+ RSL+ ++ F K+L + K   ++ +  +   K    LP  L
Sbjct: 53  DVIYYMAELKRKGLSANSINRSLAALRGFYKFLLREKKIEQNPVAEIELAKVWMRLPDTL 112

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           + ++   L+    + T         R++A+L L+Y  GLR+SE +SLT  +I      L 
Sbjct: 113 SHEEMDQLLSQPGVRTD-----SAIRDTAMLELMYATGLRVSELISLTTGSINWQVGYLV 167

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           +QGKG+K RIVP+     + +  Y+D + P  +       LF    G+ +    F + +R
Sbjct: 168 VQGKGNKERIVPIGQVAYEHVRRYFDEVRPKCIRGAQTNVLFLNKSGQGMTRQGFWKLVR 227

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GL      HT RHSFA+HLL  G DLRS+Q +LGH  +STTQIYT+V  ++   
Sbjct: 228 KYAVKAGLQKKVHPHTFRHSFASHLLEGGADLRSVQMMLGHADISTTQIYTHVTREH--- 284

Query: 309 WMMEIYDQTHPS 320
            + +I+ + HP 
Sbjct: 285 -LKDIHKKYHPR 295


>gi|281357422|ref|ZP_06243910.1| integrase family protein [Victivallis vadensis ATCC BAA-548]
 gi|281316025|gb|EFB00051.1| integrase family protein [Victivallis vadensis ATCC BAA-548]
          Length = 314

 Score =  271 bits (694), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 102/321 (31%), Positives = 153/321 (47%), Gaps = 19/321 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +      +LQ L +ER  S  T+++Y  D    L FL    E   +     Q+   + R 
Sbjct: 1   MSAALDGFLQYLRVERNASSHTVEAYRSDI---LEFLRRVMEADESFNAWSQVERNQARR 57

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+S         RS++R LS ++SF +Y+ + ++  ++  L +  +K    LP  ++  Q
Sbjct: 58  FVSSLFEAGDSKRSIQRKLSALRSFFRYMMRMELLGDNPFLKLPPIKADQPLPLVMSINQ 117

Query: 134 ALTLVD-----------NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
              L             N +  +    ++  AR+ A++ ++Y  GLRISE   L   +I 
Sbjct: 118 IDLLTKAVGEYWEMAAANGISKSDEAAEFAAARDLAMVEVIYSGGLRISETTGLDMGDID 177

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPG 241
                 R++GKG K RI  L    +KA+  Y+ L            P+F    GK L P 
Sbjct: 178 LIGGIARVRGKGKKERIAVLGRPSQKALRNYFKLRSTVGGGRAPGSPVFLNKFGKRLTPR 237

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            FQR ++       LP   T H LRHSFATHLL  G DLRS+Q +LGH  LSTTQIYT+V
Sbjct: 238 SFQRNLKNYLIAANLPPDLTPHKLRHSFATHLLDAGADLRSVQEMLGHENLSTTQIYTHV 297

Query: 302 NSKNGGDWMMEIYDQTHPSIT 322
           +++     M E+Y + HP   
Sbjct: 298 SAER----MKEVYKEAHPRAK 314


>gi|222097276|ref|YP_002531333.1| site-specific tyrosine recombinase xerc [Bacillus cereus Q1]
 gi|229197941|ref|ZP_04324656.1| Tyrosine recombinase xerC [Bacillus cereus m1293]
 gi|221241334|gb|ACM14044.1| site-specific integrase/recombinase [Bacillus cereus Q1]
 gi|228585520|gb|EEK43623.1| Tyrosine recombinase xerC [Bacillus cereus m1293]
 gi|324327728|gb|ADY22988.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 299

 Score =  271 bits (694), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 156/309 (50%), Gaps = 17/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R ++
Sbjct: 5   KLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDITYADVRLYL 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +K+  +S+ R +S ++S  ++L +     ++        KK  S+P+ L  ++  
Sbjct: 60  TTLHDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELE 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L +      S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG 
Sbjct: 120 ELFE-----VSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGK 174

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K R +P     + A++ Y +     L    +     +F   +G PL     +  + +L +
Sbjct: 175 KQRYIPFGSYAQDALITYIENGRKQLAKKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIK 234

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +     +  
Sbjct: 235 KASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER----LRS 290

Query: 313 IYDQTHPSI 321
           +Y + HP  
Sbjct: 291 VYMKHHPRA 299


>gi|315653500|ref|ZP_07906421.1| integrase/recombinase XerD [Lactobacillus iners ATCC 55195]
 gi|315489191|gb|EFU78832.1| integrase/recombinase XerD [Lactobacillus iners ATCC 55195]
          Length = 297

 Score =  271 bits (694), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 96/309 (31%), Positives = 163/309 (52%), Gaps = 18/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
              +++L+  +IERGLS  TL SY  D  ++  FL     + + I T  ++    I +F+
Sbjct: 4   DSLEDYLRFAQIERGLSNNTLLSYRQDLLEYFSFL-----KSLGITTW-EVDALIIDSFL 57

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++ R +     S+ R LS ++ F ++L ++ +  +  +L + + KK   LP AL+  +  
Sbjct: 58  AQERDKGKAIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPTALSTTEVT 117

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L++         T  +  R+ AIL  LY  G+R+SE ++L   +I ++   +++ GKG 
Sbjct: 118 KLINM-----PDTTTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGS 172

Query: 196 KIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K R++P+       I +Y           +   +  +F   RG  +      + I++  +
Sbjct: 173 KQRLIPISNVAMSWIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQ 232

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+  + T HTLRH+FATHLL NG DLR +Q ILGH  +STTQIYTN+  K+    +M+
Sbjct: 233 LAGINKNVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKH----IMD 288

Query: 313 IYDQTHPSI 321
           +Y +THP I
Sbjct: 289 VYKRTHPRI 297


>gi|229104393|ref|ZP_04235062.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-28]
 gi|228679091|gb|EEL33299.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-28]
          Length = 299

 Score =  271 bits (694), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 156/309 (50%), Gaps = 17/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R ++
Sbjct: 5   KLLQLFVGYLQIERNYSKYTIASYQNDLEHFVRFM-----EREGISSFLDVTYADVRLYL 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +K+  +S+ R +S ++S  ++L +     ++        KK  S+P+ L  ++  
Sbjct: 60  TTLHDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELE 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L +      S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG 
Sbjct: 120 ELFE-----VSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGK 174

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K R +P     + A++ Y +     L    +     +F   +G PL     +  + +L +
Sbjct: 175 KQRYIPFGSYAQDALITYMENGRKQLANKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIK 234

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +     +  
Sbjct: 235 KASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER----LRS 290

Query: 313 IYDQTHPSI 321
           +Y + HP  
Sbjct: 291 VYMKHHPRA 299


>gi|254504224|ref|ZP_05116375.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
 gi|222440295|gb|EEE46974.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
          Length = 317

 Score =  271 bits (693), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 139/319 (43%), Positives = 194/319 (60%), Gaps = 9/319 (2%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
            ++L      +L      WL +L  ER LS  TL +YE D RQFL FL  +      I+ 
Sbjct: 6   TDSLLVTAKPDLNDRIAKWLDHLSDERRLSDKTLIAYERDLRQFLRFLTDHLGGAPGIKD 65

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           I  L   + R F+++RR  K+  RSL R L+GI+SFLK+L++R     +    +R  ++ 
Sbjct: 66  IADLRPADFRGFLAQRRRNKVQSRSLARGLAGIRSFLKFLERRGEINAAASDAVRPPRQL 125

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ-NI 181
            SLP+ ++ K A+ +    L        W++ARN+A+L LLYGCGLRISEALSLT +   
Sbjct: 126 RSLPKPVSAKDAIDITSGDL--AMETEAWVEARNAAVLTLLYGCGLRISEALSLTGKMAP 183

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
                T+RI GKG K RIVP+LP+V +A+  Y  LCP+ ++ +   PLF G RG PLNP 
Sbjct: 184 QPGTKTMRIIGKGRKERIVPILPAVCEAVAHYVKLCPYAISPD--GPLFLGARGGPLNPR 241

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + Q  + +LR  LGLP + T H LRHSFATHLL+ GGDLR+IQ +LGH  L++TQIYT +
Sbjct: 242 MIQLSMAKLRGALGLPETATPHALRHSFATHLLAGGGDLRTIQELLGHASLASTQIYTEI 301

Query: 302 NSKNGGDWMMEIYDQTHPS 320
           +S +    ++  YD+ HP 
Sbjct: 302 DSAH----LLAAYDKAHPR 316


>gi|145295553|ref|YP_001138374.1| site-specific tyrosine recombinase XerD [Corynebacterium glutamicum
           R]
 gi|140845473|dbj|BAF54472.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 304

 Score =  271 bits (693), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 94/308 (30%), Positives = 145/308 (47%), Gaps = 16/308 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + WL +L +ERGLS  TL +Y  D  ++  +L     E   +  IR ++   + +++   
Sbjct: 8   KTWLTHLAVERGLSANTLSNYRRDVERYCDWL-----EAAGLDDIRDITTAHVESYVKDL 62

Query: 79  RT-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           R      Q +   S  R+L   +   K+             ++        LP  L+  +
Sbjct: 63  RRGIDGQQALSASSAGRALIVARGLHKFALMEGEVAADVAADVSPPAMGRHLPDTLSINE 122

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D +    S     +D R+ A++ LLYG G RISEA+ L   ++ +    LRI GK
Sbjct: 123 VALLIDAIPH--SDIATPVDLRDRALVELLYGTGARISEAIGLAVDDVSEMPEVLRITGK 180

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K RIVP     ++A+ EY       L+      LF   RG PL+       +++    
Sbjct: 181 GSKKRIVPFGSMAQQAVREYLIRARPALSKGKSHALFLNQRGGPLSRQSAWAVLKKTVER 240

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT++      D + E+
Sbjct: 241 AGLDKDISPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTHIT----ADSLREV 296

Query: 314 YDQTHPSI 321
           +   HP  
Sbjct: 297 WRGAHPRA 304


>gi|49478402|ref|YP_037892.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|196042353|ref|ZP_03109624.1| tyrosine recombinase XerC [Bacillus cereus NVH0597-99]
 gi|218904959|ref|YP_002452793.1| tyrosine recombinase XerC [Bacillus cereus AH820]
 gi|225865812|ref|YP_002751190.1| tyrosine recombinase XerC [Bacillus cereus 03BB102]
 gi|228916468|ref|ZP_04080034.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228928879|ref|ZP_04091911.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935145|ref|ZP_04097972.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228947550|ref|ZP_04109840.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229123345|ref|ZP_04252549.1| Tyrosine recombinase xerC [Bacillus cereus 95/8201]
 gi|229157407|ref|ZP_04285485.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 4342]
 gi|254721983|ref|ZP_05183772.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           A1055]
 gi|301055321|ref|YP_003793532.1| tyrosine recombinase [Bacillus anthracis CI]
 gi|49329958|gb|AAT60604.1| site-specific integrase/recombinase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|196026809|gb|EDX65445.1| tyrosine recombinase XerC [Bacillus cereus NVH0597-99]
 gi|218540108|gb|ACK92506.1| tyrosine recombinase XerC [Bacillus cereus AH820]
 gi|225791021|gb|ACO31238.1| tyrosine recombinase XerC [Bacillus cereus 03BB102]
 gi|228626134|gb|EEK82883.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 4342]
 gi|228660121|gb|EEL15757.1| Tyrosine recombinase xerC [Bacillus cereus 95/8201]
 gi|228812070|gb|EEM58401.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228824510|gb|EEM70315.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830686|gb|EEM76291.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228843047|gb|EEM88129.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|300377490|gb|ADK06394.1| tyrosine recombinase [Bacillus cereus biovar anthracis str. CI]
          Length = 299

 Score =  271 bits (693), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 156/309 (50%), Gaps = 17/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R ++
Sbjct: 5   KLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDITYADVRLYL 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +K+  +S+ R +S ++S  ++L +     ++        KK  S+P+ L  ++  
Sbjct: 60  TTLHDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELE 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L +      S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG 
Sbjct: 120 ELFE-----VSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGK 174

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K R +P     + A++ Y +     L    +     +F   +G PL     +  + +L +
Sbjct: 175 KQRYIPFGSYAQDALITYIENGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIK 234

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +     +  
Sbjct: 235 KASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER----LRS 290

Query: 313 IYDQTHPSI 321
           +Y + HP  
Sbjct: 291 VYMKHHPRA 299


>gi|254492199|ref|ZP_05105373.1| tyrosine recombinase XerC [Methylophaga thiooxidans DMS010]
 gi|224462524|gb|EEF78799.1| tyrosine recombinase XerC [Methylophaga thiooxydans DMS010]
          Length = 302

 Score =  271 bits (693), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 84/315 (26%), Positives = 155/315 (49%), Gaps = 15/315 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S EL +    +L  L  +R LS  T+ +Y  D  Q + F      +   +     +   
Sbjct: 1   MSNELEQHANIFLDYLAQQRRLSHHTVNNYRRDLTQLIDFC-----QGQELSHWHSVKPA 55

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++R FI+    + +  R+++R LS  +S  +YL ++ +   +    ++  K    LP  L
Sbjct: 56  DLRQFIAFLHRKGLASRTIQRMLSATRSLYQYLIRQGLAETNPAQAVQAPKAEKRLPSTL 115

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  Q   L+D     T     ++  R+ AI+ L Y  GLR++E  +L  ++I      + 
Sbjct: 116 DVDQMNALLDQTQADT-----FVACRDRAIMELFYSSGLRLAELATLDLRDIDFGDQLVH 170

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG+K R+ P+     KA+ ++ +        + Q  +F   +G+ L     Q+ +  
Sbjct: 171 VTGKGNKDRVCPVGAVAIKALQDWLEKRDQTGFFD-QPAVFITQQGRRLGMRSIQKRLSF 229

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +  G+      H LRH+FA+H+L + GDLR++Q +LGH  +STTQIYT+V+ ++    
Sbjct: 230 WGKKQGISDRVHPHRLRHAFASHMLESSGDLRAVQELLGHSDISTTQIYTHVDFQH---- 285

Query: 310 MMEIYDQTHPSITQK 324
           + ++YD  HP   ++
Sbjct: 286 LAKVYDSAHPRAKKR 300


>gi|120555190|ref|YP_959541.1| tyrosine recombinase XerD [Marinobacter aquaeolei VT8]
 gi|120325039|gb|ABM19354.1| tyrosine recombinase XerD subunit [Marinobacter aquaeolei VT8]
          Length = 301

 Score =  271 bits (693), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 97/313 (30%), Positives = 154/313 (49%), Gaps = 14/313 (4%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +   E  +  + +   + +E GL + T Q+Y  D  +   +L    E++    T+R    
Sbjct: 1   MPRPEDEQLIERFSDAVWLEDGLGEKTRQAYASDLYRLSGWL----EQQAGAPTLRSARR 56

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           T++ A++S+  +  +   +  R LSG++ F ++L +  I  E   L + + +    LP  
Sbjct: 57  TDLLAWMSRGLSDGLKTSTAARRLSGVRRFYRFLLREGIIAEDPTLRIDSPRLPRRLPDT 116

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L E    +L+             ++ R+ A+L +LYGCGLR+SE   LT   +   Q  +
Sbjct: 117 LTEADVESLLTE-----PDPELPVELRDRAMLEILYGCGLRVSELTGLTVDQVNLRQGVV 171

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYI 247
           RIQGKG K R+VPL       +L+Y      +L        LF G RG  +    F   I
Sbjct: 172 RIQGKGGKERLVPLGEEAVDWLLQYMRQARGELLRGKTSDALFPGNRGTAMTRQAFWYRI 231

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           R      G+    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V  +   
Sbjct: 232 RHYAIRCGITKHLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARQR-- 289

Query: 308 DWMMEIYDQTHPS 320
             + +++   HP 
Sbjct: 290 --LQDLHQAHHPR 300


>gi|206978533|ref|ZP_03239383.1| tyrosine recombinase XerC [Bacillus cereus H3081.97]
 gi|217961251|ref|YP_002339819.1| site-specific tyrosine recombinase XerC [Bacillus cereus AH187]
 gi|229140473|ref|ZP_04269028.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST26]
 gi|206743256|gb|EDZ54713.1| tyrosine recombinase XerC [Bacillus cereus H3081.97]
 gi|217067516|gb|ACJ81766.1| tyrosine recombinase XerC [Bacillus cereus AH187]
 gi|228643034|gb|EEK99310.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST26]
          Length = 299

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 156/309 (50%), Gaps = 17/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R ++
Sbjct: 5   KLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDITYADVRLYL 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +K+  +S+ R +S ++S  ++L +     ++        KK  S+P+ L  ++  
Sbjct: 60  TTLHDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELE 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L +      S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG 
Sbjct: 120 ELFE-----VSDTKTPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGK 174

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K R +P     + A++ Y +     L    +     +F   +G PL     +  + +L +
Sbjct: 175 KQRYIPFGSYAQDALITYIENGRKQLAKKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIK 234

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +     +  
Sbjct: 235 KASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER----LRS 290

Query: 313 IYDQTHPSI 321
           +Y + HP  
Sbjct: 291 VYMKHHPRA 299


>gi|197116868|ref|YP_002137295.1| site-specific recombinase, XerC [Geobacter bemidjiensis Bem]
 gi|197086228|gb|ACH37499.1| site-specific recombinase, XerC [Geobacter bemidjiensis Bem]
          Length = 293

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 97/310 (31%), Positives = 144/310 (46%), Gaps = 17/310 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  E + +   LE ER +S  TL +Y  D  QFL FLA   E         ++ +  IR 
Sbjct: 1   MKAELEQFYSYLETERNVSPHTLAAYRSDLEQFLSFLAREREAPRA----EEVDHLAIRR 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++++   +     S+ R LS I++  +YL +     ++    +   KK   LP  LN  Q
Sbjct: 57  YLAQLH-KGCAKSSIGRKLSAIRALFRYLMREGKLEKNPAELVSTPKKEKRLPFHLNIDQ 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              LV          +  +  R+ A+L  LY CG+R+SE   +   ++       R+ GK
Sbjct: 116 VSALV-----TAPAGSSGLPLRDRAVLETLYSCGIRVSELTGMNVGDMDLAAGLARVMGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R+VP+    R A+  Y        +     PL    RG  L      R +      
Sbjct: 171 GGKERLVPVGSCARSALAAYLAER---ADPGPAEPLILNARGGRLTRRSVARIVDAHMLL 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +      + HTLRH+FATHLL  G DLR+IQ +LGH  LSTTQ YT+V+     D +ME+
Sbjct: 228 IAAMRKVSPHTLRHTFATHLLEGGADLRAIQELLGHASLSTTQKYTHVS----IDKLMEV 283

Query: 314 YDQTHPSITQ 323
           YD+ HP   +
Sbjct: 284 YDKAHPKARE 293


>gi|52141657|ref|YP_085172.1| site-specific tyrosine recombinase XerC [Bacillus cereus E33L]
 gi|51975126|gb|AAU16676.1| site-specific integrase/recombinase XerD protein [Bacillus cereus
           E33L]
          Length = 299

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 156/309 (50%), Gaps = 17/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R ++
Sbjct: 5   KLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDITYADVRLYL 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +K+  +S+ R +S ++S  ++L +     ++        KK  S+P+ L  ++  
Sbjct: 60  TTLHDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELE 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L +      S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG 
Sbjct: 120 ELFE-----VSDTATPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGK 174

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K R +P     + A++ Y +     L    +     +F   +G PL     +  + +L +
Sbjct: 175 KQRYIPFGSYAQDALITYIENGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIK 234

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +     +  
Sbjct: 235 KASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER----LRS 290

Query: 313 IYDQTHPSI 321
           +Y + HP  
Sbjct: 291 VYMKHHPRA 299


>gi|320540116|ref|ZP_08039771.1| site-specific tyrosine recombinase [Serratia symbiotica str.
           Tucson]
 gi|320029782|gb|EFW11806.1| site-specific tyrosine recombinase [Serratia symbiotica str.
           Tucson]
          Length = 299

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 93/308 (30%), Positives = 152/308 (49%), Gaps = 17/308 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            + + +L  L +ER L++ TL SY  D +  + +L           T+ Q    +++AF+
Sbjct: 7   AQIEQFLDALWLERNLAENTLVSYRLDLQALVAWLNHQNI------TLLQAQALDLQAFL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++R        S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q  
Sbjct: 61  AERVDGGYKATSSARLLSAMRRLFQYLYREKLRADDPTTRLASPKLPQRLPKDLSEAQID 120

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+           + I+ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+
Sbjct: 121 ALL-----KAPCVDQPIELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGN 175

Query: 196 KIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K R+VPL       I  Y     P+ +N      LF   R + +    F   I+      
Sbjct: 176 KERLVPLGEEAVYWIENYLEHGRPWLVNSQALDVLFPSQRCQQMTRQTFWHRIKHYAILA 235

Query: 255 GLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + ++
Sbjct: 236 GIDSERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQL 291

Query: 314 YDQTHPSI 321
           + Q HP  
Sbjct: 292 HQQHHPRA 299


>gi|210634278|ref|ZP_03298051.1| hypothetical protein COLSTE_01973 [Collinsella stercoris DSM 13279]
 gi|210158880|gb|EEA89851.1| hypothetical protein COLSTE_01973 [Collinsella stercoris DSM 13279]
          Length = 302

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 98/315 (31%), Positives = 153/315 (48%), Gaps = 21/315 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL +  + +L +L +ER LS  T+ +Y  D   +  FLA     +  +     ++  ++ 
Sbjct: 3   ELERCCREYLGHLSVERNLSPYTVAAYRRDLEAYRAFLA-----ERGVTGPDSVTRRDVE 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F++ RR     D S+ R+LS +K   ++L +  I+T      +R  K +  LP  ++  
Sbjct: 58  DFVAHRRETGAADASVNRALSAVKGLHRFLVREGISTTYPTSAIRTPKAAKHLPDVISID 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           QA  L+D              AR+ A L +LYGCGLR+SE   L  +++  D+  L + G
Sbjct: 118 QACALLDQ-----PFPATAAGARDHAALEVLYGCGLRVSELTGLDVRDLHLDEEFLLVMG 172

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFD------LNLNIQLPLFRGIRGKPLNPGVFQRY 246
           KG K R+ P+  S  +A+  Y  L   D          +   +F   RG  L+       
Sbjct: 173 KGSKERLAPITGSALRALEAYLTLGARDELMGHARAAGVSPAVFLNARGTRLSRQSVHAI 232

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
             +  R +G+      HTLRHSFATH+L+ G DLR +Q ILGH  ++TTQIYT+V+    
Sbjct: 233 CERYGRMVGIE-GLHPHTLRHSFATHMLAGGADLRVLQEILGHADIATTQIYTHVDQTQ- 290

Query: 307 GDWMMEIYDQTHPSI 321
              + E+Y   HP  
Sbjct: 291 ---LREVYLAAHPRA 302


>gi|260775484|ref|ZP_05884381.1| site-specific recombinase XerD [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608665|gb|EEX34830.1| site-specific recombinase XerD [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 302

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 90/306 (29%), Positives = 148/306 (48%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + +ERGLS+ TL SY  D  + L ++            +  +S + ++ + S 
Sbjct: 12  VEQFLDAMWLERGLSENTLASYRNDLSKLLQWMTENNYR------LDFISLSGLQDYQSW 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q     S  R LS I+   +YL + K+  +     + + K    LP+ L+E+Q   L
Sbjct: 66  LMDQGYKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPKRLPKDLSEEQVEAL 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L+       ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG K 
Sbjct: 126 -----LNAPDPNDAMELRDKAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGGKE 180

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +    I  +        L       +F   R + +    F   I+      G+
Sbjct: 181 RLVPMGENAVDWIETFIQQGRSELLGETTSDVVFPSKRARQMTRQTFWYRIKHYAVLAGI 240

Query: 257 PLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 241 DTEMLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHS 296

Query: 316 QTHPSI 321
           + HP  
Sbjct: 297 EHHPRA 302


>gi|312872390|ref|ZP_07732460.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2062A-h1]
 gi|312873969|ref|ZP_07734005.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2052A-d]
 gi|312875440|ref|ZP_07735443.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2053A-b]
 gi|311088951|gb|EFQ47392.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2053A-b]
 gi|311090518|gb|EFQ48926.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2052A-d]
 gi|311092213|gb|EFQ50587.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2062A-h1]
          Length = 296

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 96/309 (31%), Positives = 163/309 (52%), Gaps = 18/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
              +++L+  +IERGLS  TL SY  D  ++  FL     + + I T  ++    I +F+
Sbjct: 3   DSLEDYLRFAQIERGLSNNTLLSYRQDLLEYFSFL-----KSLGITTW-EVDALIIDSFL 56

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++ R +     S+ R LS ++ F ++L ++ +  +  +L + + KK   LP AL+  +  
Sbjct: 57  AQERDKGKAIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPIALSTTEVT 116

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L++         T  +  R+ AIL  LY  G+R+SE ++L   +I ++   +++ GKG 
Sbjct: 117 KLINM-----PDTTTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGS 171

Query: 196 KIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K R++P+       I +Y           +   +  +F   RG  +      + I++  +
Sbjct: 172 KQRLIPISNVAMSWIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQ 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+  + T HTLRH+FATHLL NG DLR +Q ILGH  +STTQIYTN+  K+    +M+
Sbjct: 232 LAGINKNVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKH----IMD 287

Query: 313 IYDQTHPSI 321
           +Y +THP I
Sbjct: 288 VYKRTHPRI 296


>gi|30263835|ref|NP_846212.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           Ames]
 gi|47529259|ref|YP_020608.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49186681|ref|YP_029933.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           Sterne]
 gi|165873312|ref|ZP_02217917.1| tyrosine recombinase XerC [Bacillus anthracis str. A0488]
 gi|167642028|ref|ZP_02400258.1| tyrosine recombinase XerC [Bacillus anthracis str. A0193]
 gi|170689658|ref|ZP_02880838.1| tyrosine recombinase XerC [Bacillus anthracis str. A0465]
 gi|170709363|ref|ZP_02899777.1| tyrosine recombinase XerC [Bacillus anthracis str. A0389]
 gi|177655993|ref|ZP_02937120.1| tyrosine recombinase XerC [Bacillus anthracis str. A0174]
 gi|229603261|ref|YP_002868069.1| tyrosine recombinase XerC [Bacillus anthracis str. A0248]
 gi|254683462|ref|ZP_05147322.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           CNEVA-9066]
 gi|254735869|ref|ZP_05193575.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           Western North America USA6153]
 gi|254739605|ref|ZP_05197299.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           Kruger B]
 gi|254751200|ref|ZP_05203239.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           Vollum]
 gi|254759317|ref|ZP_05211342.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           Australia 94]
 gi|30258479|gb|AAP27698.1| tyrosine recombinase XerC [Bacillus anthracis str. Ames]
 gi|47504407|gb|AAT33083.1| tyrosine recombinase XerC [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180608|gb|AAT55984.1| site-specific recombinase, phage integrase family [Bacillus
           anthracis str. Sterne]
 gi|164710950|gb|EDR16522.1| tyrosine recombinase XerC [Bacillus anthracis str. A0488]
 gi|167510008|gb|EDR85424.1| tyrosine recombinase XerC [Bacillus anthracis str. A0193]
 gi|170125737|gb|EDS94650.1| tyrosine recombinase XerC [Bacillus anthracis str. A0389]
 gi|170666382|gb|EDT17165.1| tyrosine recombinase XerC [Bacillus anthracis str. A0465]
 gi|172079892|gb|EDT65000.1| tyrosine recombinase XerC [Bacillus anthracis str. A0174]
 gi|229267669|gb|ACQ49306.1| tyrosine recombinase XerC [Bacillus anthracis str. A0248]
          Length = 299

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 156/309 (50%), Gaps = 17/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R ++
Sbjct: 5   KLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDITYADVRLYL 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +K+  +S+ R +S ++S  ++L +     ++        KK  S+P+ L  ++  
Sbjct: 60  TTLHDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELE 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L +      S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG 
Sbjct: 120 ELFE-----VSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGK 174

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K R +P     + A++ Y +     L    +     +F   +G PL     +  + +L +
Sbjct: 175 KQRYIPFGSYAQDALITYIENGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIK 234

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +     +  
Sbjct: 235 KASLTMRISPHILRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER----LRS 290

Query: 313 IYDQTHPSI 321
           +Y + HP  
Sbjct: 291 VYMKHHPRA 299


>gi|261820181|ref|YP_003258287.1| site-specific tyrosine recombinase XerD [Pectobacterium wasabiae
           WPP163]
 gi|261604194|gb|ACX86680.1| tyrosine recombinase XerD [Pectobacterium wasabiae WPP163]
          Length = 299

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 95/306 (31%), Positives = 151/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L +ER L++ TL SY  D R    +LA             Q+   +++AF++ 
Sbjct: 9   IEQFLDALWLERNLAENTLASYRLDLRTLAEWLAHRD------NDFLQVQALDLQAFLAD 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++ F +YL + K+ ++     + + K    LP+ L+E Q   L
Sbjct: 63  RVDGGYKATSSARLLSAMRRFFQYLYREKLRSDDPSAVLSSPKLPLRLPKDLSEAQVGAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D   +        ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K 
Sbjct: 123 LDAPSIEQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVLGKGNKE 177

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       I  Y     P+ LN      LF   R + +    F   I+       +
Sbjct: 178 RLVPLGEEAVYWIEYYLEHGRPWLLNGQTLDVLFPSNRARQMTRQTFWHRIKHYAVQASI 237

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 238 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQ 293

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 294 QHHPRA 299


>gi|283787512|ref|YP_003367377.1| tyrosine recombinase [Citrobacter rodentium ICC168]
 gi|282950966|emb|CBG90643.1| tyrosine recombinase [Citrobacter rodentium ICC168]
          Length = 298

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 86/311 (27%), Positives = 148/311 (47%), Gaps = 17/311 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +   +   +L+ L +ER LS +TL++Y+      +   A     +  +++ +Q     +R
Sbjct: 3   DFHTDVDRFLRYLGVERQLSPITLKNYQRQLDAIIALAA-----EAGLESWQQCDAAMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +F  + R + +G  SL   LS ++SF  ++        +    +   K    LP+ ++  
Sbjct: 58  SFAVRSRRKGLGPASLALRLSALRSFFDWIVSEGKLNANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  L         +  R+ A+L ++YG GLR+SE + L   ++  D   + + G
Sbjct: 118 DVNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGLDINHLDLDTGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL    L    +  LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLRG--LFGCEENALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHPSITQ 323
           +YD  HP   +
Sbjct: 286 VYDAAHPRAKR 296


>gi|194445824|ref|YP_002043179.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|200387005|ref|ZP_03213617.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|194404487|gb|ACF64709.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|199604103|gb|EDZ02648.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 300

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 88/315 (27%), Positives = 152/315 (48%), Gaps = 17/315 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +    L ++   +L+ L +ER LS +TLQ+Y+      +         +  +++ +Q   
Sbjct: 1   MTDVALSQDVSRFLRYLGVERQLSPITLQNYQRQLDAIIALAG-----ETGLKSWQQCDA 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R+F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ 
Sbjct: 56  AIVRSFAVRSRRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKN 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++      L+D  L         +  R+ A+L ++YG GLR+SE + L  +++  D   +
Sbjct: 116 IDVDDVNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEV 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +P+  +    I  + DL    L  + +  LF    GK ++    Q+   
Sbjct: 170 WVMGKGSKERRLPIGRNAVTWIEHWLDLRG--LFASDEEALFLSKLGKRISARNVQKRFA 227

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++   
Sbjct: 228 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 284

Query: 309 WMMEIYDQTHPSITQ 323
            +  +YD  HP   +
Sbjct: 285 -LASVYDAAHPRAKR 298


>gi|153830656|ref|ZP_01983323.1| tyrosine recombinase XerD [Vibrio cholerae 623-39]
 gi|148873865|gb|EDL72000.1| tyrosine recombinase XerD [Vibrio cholerae 623-39]
          Length = 302

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 150/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  +  ERGL++ T+ SY  D  + L ++A           +  +S+  ++ + S 
Sbjct: 12  VEQFLDTMWFERGLAENTVVSYRNDLSKLLEWMAQNQYR------LDFISFAGLQEYQSW 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q     S  R LS I+   +YL + K+  +     + + K    LP+ L+E Q   L
Sbjct: 66  LSEQNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEAL 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +             ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG K 
Sbjct: 126 L-----SAPDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKE 180

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +  + I  +        L       +F   RG+ +    F   I+      G+
Sbjct: 181 RLVPMGENAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGI 240

Query: 257 PL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            +   + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + ++++
Sbjct: 241 DVEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHN 296

Query: 316 QTHPSI 321
           + HP  
Sbjct: 297 EHHPRA 302


>gi|56963547|ref|YP_175278.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16]
 gi|56909790|dbj|BAD64317.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16]
          Length = 297

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 90/310 (29%), Positives = 157/310 (50%), Gaps = 15/310 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
            +  + Q ++  +++E+GLS  T++SY  D +Q+  +L     +K  I    ++  + ++
Sbjct: 2   AMEHDIQEFIHFIKVEKGLSPNTIESYARDLKQYGAYL-----KKRGIDQFAKVDRSTLQ 56

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            ++   +       ++ R+++ +++  ++L + K T     L +   +    LP  L+ +
Sbjct: 57  HYLFTLKETGKSSATIARNVTTLRALHQFLYREKWTDHDPTLWIETPRIDKKLPGVLSIE 116

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L+          +     RN A+L LLY  G+R++E +SL   ++      +R+ G
Sbjct: 117 EVDALL-----AAPDSSTPFGVRNKAMLELLYASGMRVTELISLGLDDVHLSMGFVRVIG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG+K RIVPL     KA+  Y +      L       LF    G+P++   F + ++QL 
Sbjct: 172 KGNKERIVPLGKEATKALNTYLERGRGALLKHERHDKLFVNHHGRPISRQGFWKIMKQLA 231

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +   +    + HTLRHSFATHLL NG DLRS+Q +LGH  LSTTQIYT+V        M 
Sbjct: 232 KTANIEKDFSPHTLRHSFATHLLENGADLRSVQEMLGHADLSTTQIYTHVTKTR----MK 287

Query: 312 EIYDQTHPSI 321
           ++Y + HP  
Sbjct: 288 DVYSRYHPRA 297


>gi|168703879|ref|ZP_02736156.1| integrase/recombinase [Gemmata obscuriglobus UQM 2246]
          Length = 301

 Score =  271 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 92/310 (29%), Positives = 148/310 (47%), Gaps = 13/310 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +   ++L +L +E+  S  T++SY  D  Q L F+   T++      +   +   +R+
Sbjct: 3   LEQGLADFLTHLGLEKNSSDKTVKSYREDLTQALGFVRDRTKK--GHVAVGDWTTRTVRS 60

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+S    Q     ++ R L+ ++SF KYL +  +   +  L +R  K+   LP  L    
Sbjct: 61  FVSWLHEQGYAKSTIARRLAAVRSFSKYLCRAGVLDVNPALALRGPKQDKKLPHFLTLAD 120

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L     L     T W   R+ A+L  LY  G+R+SE + L    +  +   + ++GK
Sbjct: 121 VQKL-----LTAPPATDWAGRRDRAVLETLYASGIRVSELVGLDLLAVDLNDGVITVRGK 175

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLR 251
           G K R+  L P   KAI  +Y+     L    Q    +F   +G  L      R +    
Sbjct: 176 GKKERLALLGPDAVKAITLWYEDRSALLARTGQETEAVFLNNKGGRLTTRSVGRLLSHHL 235

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +  GL   T+ HTLRHSFATH+L  G D+R +Q +LGH  L+TTQ+YT+V ++     + 
Sbjct: 236 KVAGLDPRTSPHTLRHSFATHMLDAGADIRGVQELLGHKSLATTQVYTHVTTQR----LQ 291

Query: 312 EIYDQTHPSI 321
           + Y + HP  
Sbjct: 292 QSYQKAHPRA 301


>gi|238787321|ref|ZP_04631120.1| Tyrosine recombinase xerD [Yersinia frederiksenii ATCC 33641]
 gi|238724583|gb|EEQ16224.1| Tyrosine recombinase xerD [Yersinia frederiksenii ATCC 33641]
          Length = 299

 Score =  271 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 151/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L +ER L++ TL SY  D      +L  +         + +    ++++F+++
Sbjct: 9   IEQFLDALWLERNLAENTLASYRLDLHALSGWLEHHG------SDLLRAGSQDLQSFLAE 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q   L
Sbjct: 63  RIEGGYKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +     ++ +    ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K 
Sbjct: 123 L-----NSPNVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKE 177

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       I  Y     P+ +N      LF   R + +    F   I+      G+
Sbjct: 178 RLVPLGEEAVYWIENYMEHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGI 237

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 238 DSERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQ 293

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 294 QHHPRA 299


>gi|223043159|ref|ZP_03613206.1| tyrosine recombinase XerD [Staphylococcus capitis SK14]
 gi|314933674|ref|ZP_07841039.1| tyrosine recombinase XerD [Staphylococcus caprae C87]
 gi|222443370|gb|EEE49468.1| tyrosine recombinase XerD [Staphylococcus capitis SK14]
 gi|313653824|gb|EFS17581.1| tyrosine recombinase XerD [Staphylococcus caprae C87]
          Length = 295

 Score =  271 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 157/305 (51%), Gaps = 15/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  ++IE+GLS  T+ +Y  D +++  +L     E+  I  I  +    I+  +  
Sbjct: 5   IEEYLNFIQIEKGLSSNTIGAYRRDLKKYEEYL-----EERKISHIDFVDRQVIQECLGH 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                   +SL R +S I+SF ++  + +   +   + +   K    LP  L  ++ L L
Sbjct: 60  LIDLGQSSKSLARFISTIRSFHQFALRERYAAKDPTVLIETPKYEKKLPDVLEVQEVLDL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++     T   +K    R+  +L LLY  G+R+SE + L  +++      +R+ GKG+K 
Sbjct: 120 LE-----TPDLSKNNGYRDRTMLELLYATGMRVSEIIQLEVEDVNLMMGFVRVFGKGNKE 174

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVPL  +V + +  Y   + P  L   +   LF  + GKPL+     + I+Q      +
Sbjct: 175 RIVPLGDAVIEYLTTYIETVRPQLLKQTVTHVLFLNMHGKPLSRQGIWKMIKQNGIKANI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y+Q
Sbjct: 235 NKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYNQ 290

Query: 317 THPSI 321
            HP  
Sbjct: 291 FHPRA 295


>gi|218898984|ref|YP_002447395.1| tyrosine recombinase XerC [Bacillus cereus G9842]
 gi|228909656|ref|ZP_04073479.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 200]
 gi|228940919|ref|ZP_04103478.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228973848|ref|ZP_04134424.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980438|ref|ZP_04140748.1| Tyrosine recombinase xerC [Bacillus thuringiensis Bt407]
 gi|218544580|gb|ACK96974.1| tyrosine recombinase XerC [Bacillus cereus G9842]
 gi|228779258|gb|EEM27515.1| Tyrosine recombinase xerC [Bacillus thuringiensis Bt407]
 gi|228785873|gb|EEM33876.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818755|gb|EEM64821.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228849945|gb|EEM94776.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 200]
 gi|326941600|gb|AEA17496.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 299

 Score =  271 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 87/309 (28%), Positives = 155/309 (50%), Gaps = 17/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R ++
Sbjct: 5   KLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYL 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +K+  +S+ R +S ++S  ++L +     ++        KK  S+P+ L  ++  
Sbjct: 60  TTLHDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELE 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L +      S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG 
Sbjct: 120 ELFE-----VSDTGTPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGK 174

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRR 252
           K R +P     + +++ Y +     L          +F   +G PL     +  + +L +
Sbjct: 175 KQRYIPFGSYAQDSLITYIENGRKQLVNKTDEDSRMVFLNAKGTPLTSRGVRYVLNELIK 234

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +     +  
Sbjct: 235 KASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER----LRS 290

Query: 313 IYDQTHPSI 321
           +Y + HP  
Sbjct: 291 VYMKHHPRA 299


>gi|77457252|ref|YP_346757.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens
           Pf0-1]
 gi|77381255|gb|ABA72768.1| integrase/recombinase [Pseudomonas fluorescens Pf0-1]
          Length = 298

 Score =  271 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 96/304 (31%), Positives = 147/304 (48%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GLS  T  +Y  D   F  +L     E I            I   ++ 
Sbjct: 9   IDQFLDALWLEKGLSDNTRDAYRSDLALFNGWLQDKGLELINA------GRELILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  Q    RS  R LSG++ F +YL + K+ +    L +   +    LP++L+E     L
Sbjct: 63  RLEQNYKPRSTARFLSGVRGFYRYLLREKLISVDPTLRVDMPQLGRPLPKSLSEADVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +          ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K 
Sbjct: 123 L-----KAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y      +L        LF   RG+ +    F   I+   +  G+
Sbjct: 178 RLVPMGEEAIVWVERYLRDGRGELLGGRPSDVLFPSQRGEQMTRQTFWHRIKHQAKVAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + +++ +
Sbjct: 238 SKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHV----ARARLQDLHAK 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|86139170|ref|ZP_01057740.1| tyrosine recombinase [Roseobacter sp. MED193]
 gi|85824014|gb|EAQ44219.1| tyrosine recombinase [Roseobacter sp. MED193]
          Length = 312

 Score =  271 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 129/321 (40%), Positives = 187/321 (58%), Gaps = 9/321 (2%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M        +S       Q WLQ L    G S  T+ +Y+ D   FL F+  ++     +
Sbjct: 1   MSATEAQMFISPACRNALQLWLQGLRALDGASDNTINAYQGDISSFLAFMTQHSGAPQGL 60

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             + +++ +++R+++++ R    G RSL R LS +KSF ++L +R+    + +L  R  K
Sbjct: 61  GALARITTSDMRSWMAQERNAGTGARSLARRLSAVKSFYRWLAEREGFELTAVLAARAPK 120

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LPR L+E  A  +++ V L ++  T WI AR+ A++ LLYGCGLRISEAL+LT + 
Sbjct: 121 FQKKLPRPLDEDAARAVIETVELQSN--TDWIAARDVAVVTLLYGCGLRISEALALTGKT 178

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                S+LRI GKG K R+VP++ + R+A+  Y  L P+    +   PLFRG RG  LNP
Sbjct: 179 APL-PSSLRILGKGGKERLVPVIAAAREAVARYIALSPYPNEAD--GPLFRGARGGALNP 235

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              Q  + Q R  LGLP S T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ YT 
Sbjct: 236 RQIQGAMAQARAQLGLPASATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTA 295

Query: 301 VNSKNGGDWMMEIYDQTHPSI 321
           V++ +    +M +Y+++HP  
Sbjct: 296 VDTAH----LMAVYNRSHPKA 312


>gi|238759282|ref|ZP_04620448.1| Tyrosine recombinase xerD [Yersinia aldovae ATCC 35236]
 gi|238702443|gb|EEP94994.1| Tyrosine recombinase xerD [Yersinia aldovae ATCC 35236]
          Length = 299

 Score =  271 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 90/306 (29%), Positives = 151/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L +ER L++ TL SY  D      +L  +         + +    ++++F+++
Sbjct: 9   IEQFLDALWLERNLAENTLASYRLDLHALTGWLECHG------SDLLRAVPQDLQSFLAE 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q   L
Sbjct: 63  RIEGGYKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L++ +    ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K 
Sbjct: 123 -----LNSPNVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKE 177

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       I  Y     P+ +N      LF   R + +    F   I+      G+
Sbjct: 178 RLVPLGEEAVYWIENYMEHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGI 237

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 238 DSERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQ 293

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 294 QHHPRA 299


>gi|56697962|ref|YP_168333.1| site-specific tyrosine recombinase XerC [Ruegeria pomeroyi DSS-3]
 gi|56679699|gb|AAV96365.1| tyrosine recombinase XerC [Ruegeria pomeroyi DSS-3]
          Length = 306

 Score =  271 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 127/313 (40%), Positives = 186/313 (59%), Gaps = 9/313 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++S       Q WL       G ++ T+ +Y  D  +F+ F+  +      +  + ++  
Sbjct: 3   LISPACRDALQLWLDTQRALAGRAENTITAYRTDVVEFMSFMTLHFGATQGLAPLARIGV 62

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++RA++++ R   IG RSL R LS +KSF ++L +R+    + +L+ R  K    LPR 
Sbjct: 63  PDMRAWMAQMRADGIGARSLARKLSAVKSFYRWLAEREGFEPTAVLSTRAPKFQRKLPRP 122

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L E  A  ++D V L +S    WI AR+ A++ LLYGCGLRISEALSLT +      +TL
Sbjct: 123 LAEDAARAMIDTVELQSSKP--WIAARDMAVVTLLYGCGLRISEALSLTGRAAPL-PATL 179

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI+GKG K R+VP++P  R A+  Y  LCP+ +    + PLFRG RG PLN    Q  + 
Sbjct: 180 RIRGKGGKERLVPVIPVARAAVDTYLRLCPWPVE--PETPLFRGARGGPLNARSIQAVMA 237

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           + R  LGLP + T H +RHSFATHLL  GGDLR+IQ +LGH  LSTTQ YT V++ +   
Sbjct: 238 KARMQLGLPATATPHAMRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAH--- 294

Query: 309 WMMEIYDQTHPSI 321
            +M++Y+++HP  
Sbjct: 295 -LMDVYNRSHPKA 306


>gi|83950126|ref|ZP_00958859.1| tyrosine recombinase [Roseovarius nubinhibens ISM]
 gi|83838025|gb|EAP77321.1| tyrosine recombinase [Roseovarius nubinhibens ISM]
          Length = 305

 Score =  271 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 129/314 (41%), Positives = 199/314 (63%), Gaps = 10/314 (3%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++S       Q WL      +G S  T+++Y  D  +FL F++ +   +  I  + ++S 
Sbjct: 1   MMSPAARDALQGWLDMSRALKGQSDNTIEAYGRDVAEFLTFMSLHLGGEAGIAALGRISV 60

Query: 69  TEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
           T++R+++++ R+   +G RSL R LS +KSF+++L +R+    + +L+MR+ K +  LPR
Sbjct: 61  TDMRSWMAQMRSGGEVGPRSLARKLSAVKSFIRWLAEREGFDPTAVLSMRSPKFTRKLPR 120

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L+ + A  +++     +S    WI +R+ A++ LLYGCGLRISEALSLT +++   +  
Sbjct: 121 PLSAEHARDVIETAGQQSSAP--WIGSRDMAVITLLYGCGLRISEALSLTGESLPLGE-M 177

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           LRI+GKG K R+VP++ + R A+ EY  LCP+ L+     PLFRG RG PL+P + Q+ +
Sbjct: 178 LRIRGKGGKERLVPVIGAARAAVAEYAKLCPYPLDEGA--PLFRGARGGPLSPRIVQKVV 235

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +Q+R  LGLP S T H +RHSFATHLL+ GGDLR+IQ +LGH  LSTTQ YT V++    
Sbjct: 236 QQVRMQLGLPASATPHAMRHSFATHLLNAGGDLRTIQELLGHASLSTTQAYTAVDTAR-- 293

Query: 308 DWMMEIYDQTHPSI 321
             ++EIY   HP  
Sbjct: 294 --LLEIYRAAHPKA 305


>gi|158522508|ref|YP_001530378.1| integrase family protein [Desulfococcus oleovorans Hxd3]
 gi|158511334|gb|ABW68301.1| integrase family protein [Desulfococcus oleovorans Hxd3]
          Length = 308

 Score =  271 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 98/303 (32%), Positives = 156/303 (51%), Gaps = 11/303 (3%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
             ++++L  E+G S  T ++Y  D ++FL FL+   + +  +  +  +S   IR +++  
Sbjct: 15  DAFVESLASEKGYSPNTCRAYSADLKEFLAFLSPPDDTEHPVC-LDDISVIAIRGYLAFL 73

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +K+   ++ R LS ++SF +YL+KR I T +    + + K    +P  L+      L+
Sbjct: 74  HKKKMDKSTVSRKLSVLRSFFRYLEKRGIMTGNPARAVLSPKIGRKIPAFLSVDDMFRLL 133

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D      S     +D RN AI   +Y  G+R+SEA  L   ++  D+   R+ GKG K R
Sbjct: 134 D-----ASTGDTLLDLRNRAIFETIYSTGIRVSEAAGLDAAHVETDERVFRVYGKGAKER 188

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+      +I  Y      +  + ++  PLF       L      R ++Q     GL 
Sbjct: 189 VVPVGKKALASIAAYRTRLFEETGIGVEEGPLFLNKNRGRLTTRSMDRILKQTALRCGLT 248

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           +S + H LRHSFATH+L  G DLR++Q ILGH  LSTTQ YT+V+     D +ME+YD  
Sbjct: 249 VSLSPHALRHSFATHMLDAGADLRTVQEILGHKSLSTTQKYTHVS----MDKLMEVYDHA 304

Query: 318 HPS 320
           HP 
Sbjct: 305 HPR 307


>gi|283834576|ref|ZP_06354317.1| tyrosine recombinase XerC [Citrobacter youngae ATCC 29220]
 gi|291069704|gb|EFE07813.1| tyrosine recombinase XerC [Citrobacter youngae ATCC 29220]
          Length = 300

 Score =  271 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 88/315 (27%), Positives = 150/315 (47%), Gaps = 17/315 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +    L ++   +L+ L +ER LS +TL +Y+      +         +  +Q+ +Q   
Sbjct: 1   MTDSPLSQDVARFLRYLGVERQLSPITLLNYQRQLDAIIALAG-----ETGLQSWQQCDA 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R+F  + R + +G  SL   LS ++SF  +L  +     +   ++   K    LP+ 
Sbjct: 56  AMVRSFAVRSRRKGLGPASLALRLSALRSFFDWLVNQGELKANPAKSVSAPKAPRHLPKN 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++      L+D  L         +  R+ A+L ++YG GLR+SE + L  +++  D   +
Sbjct: 116 IDVDDVNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEV 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +P+  +    I  + DL    L       LF    GK ++    Q+   
Sbjct: 170 WVMGKGSKERRLPIGRNAVAWIEHWLDLRG--LFGGDDDALFLSKLGKRISARNVQKRFA 227

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++   
Sbjct: 228 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 284

Query: 309 WMMEIYDQTHPSITQ 323
            +  +YD  HP   +
Sbjct: 285 -LASVYDAAHPRAKR 298


>gi|161507450|ref|YP_001577404.1| integrase/recombinase [Lactobacillus helveticus DPC 4571]
 gi|260101638|ref|ZP_05751875.1| integrase/recombinase XerD [Lactobacillus helveticus DSM 20075]
 gi|160348439|gb|ABX27113.1| Integrase/recombinase [Lactobacillus helveticus DPC 4571]
 gi|260084571|gb|EEW68691.1| integrase/recombinase XerD [Lactobacillus helveticus DSM 20075]
 gi|323466665|gb|ADX70352.1| Tyrosine recombinase xerD [Lactobacillus helveticus H10]
 gi|328467464|gb|EGF38539.1| tyrosine recombinase xerD [Lactobacillus helveticus MTCC 5463]
          Length = 301

 Score =  271 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 100/324 (30%), Positives = 166/324 (51%), Gaps = 26/324 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ME N         L  +  ++L+  +IERGLS  T+ +Y  D  ++L F+     +    
Sbjct: 1   MEKNK--------LQDQIDDYLRYSQIERGLSSNTITAYRQDLEEYLAFVKKEGMDSWPT 52

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           +       +++ AF++++        S+ R +S ++ F ++L ++ I   + +L +   K
Sbjct: 53  E------ASDVDAFLARQYDLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPK 106

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K   LP ALN+K+      N LL      + +  R+ AIL  LY  G+R+SE ++L  Q+
Sbjct: 107 KERRLPVALNQKEI-----NDLLAQPDIKRKLGLRDRAILETLYATGMRVSELINLELQD 161

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKP 237
           + +D   +R+ GKG K R++P+       I +Y       L          +F   R K 
Sbjct: 162 LHEDLGLVRVLGKGSKERLIPISSVALHWIKQYQKEVRDPLILKAGQNDEHIFLNSRAKQ 221

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L      + I++  +  G+    T HTLRH+FATHLL NG DLR +Q ILGH  +STTQI
Sbjct: 222 LTRQAIWQMIKKYCQSAGITKDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQI 281

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSI 321
           YTN++ K+    ++++Y +THP +
Sbjct: 282 YTNLSQKH----ILQVYQKTHPRL 301


>gi|39996918|ref|NP_952869.1| integrase/recombinase XerD [Geobacter sulfurreducens PCA]
 gi|39983806|gb|AAR35196.1| integrase/recombinase XerD [Geobacter sulfurreducens PCA]
          Length = 295

 Score =  271 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 90/306 (29%), Positives = 151/306 (49%), Gaps = 15/306 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +    +L  L +E+GL++ +++SY  D  ++L ++  +            +    +  F+
Sbjct: 3   QHLDLFLGYLVVEKGLARNSVESYARDLSRYLGYVEQHAG-----GDPAAIRPLHVADFL 57

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +  +   +G RS  R+LS ++ F ++L        +    +   +    LP+ L  ++  
Sbjct: 58  AHLKESGLGARSRARALSAVRMFHRFLLVEGYAETNPTSIIEAPRVLAKLPQVLTGREVE 117

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
                +LL        I+ R+ A+L LLY  GLR+SE + L  +++      L   GKG+
Sbjct: 118 -----MLLAAPAGDAPIEVRDRAMLELLYATGLRVSELVGLRTRDVNTSAGYLMTVGKGE 172

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K R+VP+  S   A++ Y       L    + P LF    G+ +    F   I++  R  
Sbjct: 173 KERLVPMGESACAAVVLYLSSARIQLGRGGESPFLFLSRLGERMTRQAFWNIIKKRSRQA 232

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+    + HTLRHSFATHLL NG DLRS+Q++LGH  LSTTQIYT+V  +     +  ++
Sbjct: 233 GILKGISPHTLRHSFATHLLENGADLRSVQAMLGHADLSTTQIYTHVTRER----LKRLH 288

Query: 315 DQTHPS 320
           +Q HP 
Sbjct: 289 EQFHPR 294


>gi|22127152|ref|NP_670575.1| site-specific tyrosine recombinase XerD [Yersinia pestis KIM 10]
 gi|45443323|ref|NP_994862.1| site-specific tyrosine recombinase XerD [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51597478|ref|YP_071669.1| site-specific tyrosine recombinase XerD [Yersinia
           pseudotuberculosis IP 32953]
 gi|108806374|ref|YP_650290.1| site-specific tyrosine recombinase XerD [Yersinia pestis Antiqua]
 gi|108813251|ref|YP_649018.1| site-specific tyrosine recombinase XerD [Yersinia pestis Nepal516]
 gi|145597930|ref|YP_001162006.1| site-specific tyrosine recombinase XerD [Yersinia pestis Pestoides
           F]
 gi|150260097|ref|ZP_01916825.1| integrase/recombinase [Yersinia pestis CA88-4125]
 gi|153948372|ref|YP_001399863.1| site-specific tyrosine recombinase XerD [Yersinia
           pseudotuberculosis IP 31758]
 gi|162418404|ref|YP_001608154.1| site-specific tyrosine recombinase XerD [Yersinia pestis Angola]
 gi|165924857|ref|ZP_02220689.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165937373|ref|ZP_02225937.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166010314|ref|ZP_02231212.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166212682|ref|ZP_02238717.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167399752|ref|ZP_02305270.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167418760|ref|ZP_02310513.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167425367|ref|ZP_02317120.1| tyrosine recombinase XerD [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|170023169|ref|YP_001719674.1| site-specific tyrosine recombinase XerD [Yersinia
           pseudotuberculosis YPIII]
 gi|186896598|ref|YP_001873710.1| site-specific tyrosine recombinase XerD [Yersinia
           pseudotuberculosis PB1/+]
 gi|218928065|ref|YP_002345940.1| site-specific tyrosine recombinase XerD [Yersinia pestis CO92]
 gi|229837578|ref|ZP_04457740.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A]
 gi|229840801|ref|ZP_04460960.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842640|ref|ZP_04462795.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229903707|ref|ZP_04518820.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516]
 gi|270487486|ref|ZP_06204560.1| tyrosine recombinase XerD [Yersinia pestis KIM D27]
 gi|294502941|ref|YP_003567003.1| tyrosine recombinase [Yersinia pestis Z176003]
 gi|34222946|sp|Q8ZHK1|XERD_YERPE RecName: Full=Tyrosine recombinase xerD
 gi|21960213|gb|AAM86826.1|AE013928_11 site-specific recombinase [Yersinia pestis KIM 10]
 gi|45438192|gb|AAS63739.1| integrase/recombinase [Yersinia pestis biovar Microtus str. 91001]
 gi|51590760|emb|CAH22405.1| Probable site-specific integrase/recombinase [Yersinia
           pseudotuberculosis IP 32953]
 gi|108776899|gb|ABG19418.1| tyrosine recombinase XerD subunit [Yersinia pestis Nepal516]
 gi|108778287|gb|ABG12345.1| tyrosine recombinase XerD subunit [Yersinia pestis Antiqua]
 gi|115346676|emb|CAL19559.1| integrase/recombinase [Yersinia pestis CO92]
 gi|145209626|gb|ABP39033.1| tyrosine recombinase XerD subunit [Yersinia pestis Pestoides F]
 gi|149289505|gb|EDM39582.1| integrase/recombinase [Yersinia pestis CA88-4125]
 gi|152959867|gb|ABS47328.1| tyrosine recombinase XerD [Yersinia pseudotuberculosis IP 31758]
 gi|162351219|gb|ABX85167.1| tyrosine recombinase XerD [Yersinia pestis Angola]
 gi|165914847|gb|EDR33460.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165923057|gb|EDR40208.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165990800|gb|EDR43101.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166205974|gb|EDR50454.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962754|gb|EDR58775.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050460|gb|EDR61868.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055767|gb|EDR65551.1| tyrosine recombinase XerD [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169749703|gb|ACA67221.1| tyrosine recombinase XerD [Yersinia pseudotuberculosis YPIII]
 gi|186699624|gb|ACC90253.1| tyrosine recombinase XerD [Yersinia pseudotuberculosis PB1/+]
 gi|229679477|gb|EEO75580.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516]
 gi|229690950|gb|EEO83004.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697167|gb|EEO87214.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229704266|gb|EEO91277.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A]
 gi|262360976|gb|ACY57697.1| tyrosine recombinase [Yersinia pestis D106004]
 gi|262364916|gb|ACY61473.1| tyrosine recombinase [Yersinia pestis D182038]
 gi|270335990|gb|EFA46767.1| tyrosine recombinase XerD [Yersinia pestis KIM D27]
 gi|294353400|gb|ADE63741.1| tyrosine recombinase [Yersinia pestis Z176003]
 gi|320014032|gb|ADV97603.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 299

 Score =  271 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 90/306 (29%), Positives = 153/306 (50%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L +ER L++ TL SY  D    + +L  +         + + S  ++++F+++
Sbjct: 9   IEQFLDALWLERNLAENTLASYRLDLHALVGWLTHHN------SDLLRASPQDLQSFLAE 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q   L
Sbjct: 63  RIEGGYKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +     ++ +    ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K 
Sbjct: 123 L-----NSPNVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKE 177

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       I  Y     P+ +N      LF   R + +    F   I+      G+
Sbjct: 178 RLVPLGEEAVYWIENYMEHGRPWLVNGASLDVLFPSNRSQQMTRQTFWHRIKHYAILAGI 237

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 238 DSERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 293

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 294 QHHPRA 299


>gi|121533770|ref|ZP_01665597.1| tyrosine recombinase XerC [Thermosinus carboxydivorans Nor1]
 gi|121307761|gb|EAX48676.1| tyrosine recombinase XerC [Thermosinus carboxydivorans Nor1]
          Length = 302

 Score =  271 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 85/310 (27%), Positives = 149/310 (48%), Gaps = 17/310 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +E + + + L +E+  S  T++SY  D   F  F   +   ++    I   +   IRA++
Sbjct: 6   QEIEQFFRYLRLEKNASPHTVKSYREDIEHFWEFALQHNGSEVLFAAI---TPMLIRAYL 62

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++ +       ++ R ++ ++SF ++L +  +   +    +   K    LP  L+E++  
Sbjct: 63  ARLKADDYARTTIARRIAALRSFYRFLCREGLVDTNPFKLVHTPKIEKKLPVFLDEREVA 122

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L++            +  R++AIL LLY  G+R++E   L   ++      + + GKG 
Sbjct: 123 ELLELPA------DDVLGRRDAAILELLYATGIRVAELTGLKTSDVDLVSRFVIVCGKGA 176

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           K RIVP+  +   A+  Y       L           LF   +G PL     +R I +  
Sbjct: 177 KERIVPIGRTAAAALERYLADARPRLYSKWRKEQHQFLFINSKGGPLTDRSVRRIIDKYI 236

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             L +    + HT+RH+FATH+L+NG DLRS+Q +LGH  LSTTQ+YT+V  +     + 
Sbjct: 237 ANLAVAKKVSPHTIRHTFATHMLNNGADLRSVQEMLGHVNLSTTQLYTHVTKER----LK 292

Query: 312 EIYDQTHPSI 321
            +Y +THP  
Sbjct: 293 AVYRETHPRA 302


>gi|92116157|ref|YP_575886.1| site-specific tyrosine recombinase XerC [Nitrobacter hamburgensis
           X14]
 gi|91799051|gb|ABE61426.1| tyrosine recombinase XerC subunit [Nitrobacter hamburgensis X14]
          Length = 300

 Score =  271 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 125/304 (41%), Positives = 180/304 (59%), Gaps = 8/304 (2%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            WL +L  ER LS  T ++Y  D RQ L+FL+ +  E +T++    L  +++RAF++ RR
Sbjct: 3   RWLSHLRAERRLSPKTCEAYARDARQCLMFLSQHWGELVTLKRFAALEASDVRAFMAARR 62

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              IG RSL R+L+G++SF ++L++  +     +  +R  K   SLP+ +    A    D
Sbjct: 63  ADDIGGRSLMRALAGLRSFARFLEREGLGKVGALSAIRAPKVGKSLPKPIQMSAAKRFAD 122

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQGKGDKI 197
                      WI AR++A++ LLYG GLRISEAL L  ++         L + GKG+K 
Sbjct: 123 ASERAGEDREPWIWARDAAVMALLYGSGLRISEALGLKRRDVPQPGAGDVLVVTGKGNKT 182

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VP+L +V   + EY  +CP  L    + P+F G RG PL+P + Q  + ++R  LGLP
Sbjct: 183 RMVPVLQNVLALVHEYVAVCPHSL--PPEGPIFVGARGGPLSPRIIQLTMARMRGALGLP 240

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            S T H LRHSFATHLLS GGDLR+IQ +LGH  LSTTQIYT ++S+     ++E+Y   
Sbjct: 241 DSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDSER----LLEVYKTA 296

Query: 318 HPSI 321
           HP  
Sbjct: 297 HPRA 300


>gi|298505931|gb|ADI84654.1| integrase/recombinase XerD [Geobacter sulfurreducens KN400]
          Length = 295

 Score =  271 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 90/306 (29%), Positives = 151/306 (49%), Gaps = 15/306 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +    +L  L +E+GL++ +++SY  D  ++L ++  +            +    +  F+
Sbjct: 3   QHLDLFLGYLVVEKGLARNSVESYARDLSRYLGYVEQHAG-----GDPAAIRPLHVADFL 57

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +  +   +G RS  R+LS ++ F ++L        +    +   +    LP+ L  ++  
Sbjct: 58  AHLKESGLGARSRARALSAVRMFHRFLLVEGYAETNPTSIIEAPRVLAKLPQVLTGREVE 117

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
                +LL        I+ R+ A+L LLY  GLR+SE + L  +++      L   GKG+
Sbjct: 118 -----MLLAAPAGDAPIEVRDRAMLELLYATGLRVSELVGLRTRDVNTSAGYLMTVGKGE 172

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K R+VP+  S   A++ Y       L    + P LF    G+ +    F   I++  R  
Sbjct: 173 KERLVPMGESACAAVVLYLSSARTQLGRGGESPFLFLSRLGERMTRQAFWNIIKKRSRQA 232

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+    + HTLRHSFATHLL NG DLRS+Q++LGH  LSTTQIYT+V  +     +  ++
Sbjct: 233 GILKGISPHTLRHSFATHLLENGADLRSVQAMLGHADLSTTQIYTHVTRER----LKRLH 288

Query: 315 DQTHPS 320
           +Q HP 
Sbjct: 289 EQFHPR 294


>gi|42782923|ref|NP_980170.1| site-specific tyrosine recombinase XerC [Bacillus cereus ATCC
           10987]
 gi|42738850|gb|AAS42778.1| site-specific recombinase, phage integrase family [Bacillus cereus
           ATCC 10987]
          Length = 299

 Score =  271 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 155/309 (50%), Gaps = 17/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R ++
Sbjct: 5   KLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDITYADVRLYL 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +K+  +S+ R +S ++S  ++L +     ++        KK  S+P+ L  ++  
Sbjct: 60  TTLHDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELE 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L        S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG 
Sbjct: 120 ELF-----KVSDTGTPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGK 174

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K R +P     + A++ Y +     L    +     +F   +G PL     +  + +L +
Sbjct: 175 KQRYIPFGSYAQDALITYIENGRKQLAKKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIK 234

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +     +  
Sbjct: 235 KASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER----LRS 290

Query: 313 IYDQTHPSI 321
           +Y + HP  
Sbjct: 291 VYMKHHPRA 299


>gi|212639574|ref|YP_002316094.1| site-specific tyrosine recombinase XerC [Anoxybacillus flavithermus
           WK1]
 gi|254799325|sp|B7GGC7|XERC_ANOFW RecName: Full=Tyrosine recombinase xerC
 gi|212561054|gb|ACJ34109.1| Site-specific recombinase XerD [Anoxybacillus flavithermus WK1]
          Length = 300

 Score =  271 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 98/304 (32%), Positives = 159/304 (52%), Gaps = 17/304 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +++ L+IE+  S+ T+  Y+ D  +F  F+     E+  I+ ++Q+SY+++R F+++   
Sbjct: 11  FIEYLQIEKNYSEYTIACYKHDIGEFFEFM-----EREQIKQLQQVSYSDVRLFLTELHQ 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +K   RS+ R +S ++SF K+L + KI +E+        KK   +P  L   +   L   
Sbjct: 66  RKQSSRSIARKMSSLRSFYKFLLREKIVSENPFALASLPKKEQKIPHFLYPDELEQLFVV 125

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L+T+     I  RN A++ LLY  G+R+SE  ++   +I     T+ I GKG+K R V
Sbjct: 126 NDLNTA-----IGQRNQAMIELLYATGIRVSECCNIRLSHIDFSVCTILISGKGNKQRYV 180

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           P     ++A+  Y       L    + P   LF   RG  L P   +  +  +     L 
Sbjct: 181 PFGTYAKEALERYIQDGRQQLASKAKTPTDVLFLNARGGALTPRGVRHILNDIVERAALS 240

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           L  + HT RH+FATHLL+ G DLRS+Q +LGH  LS+TQ+YT+V      D +  +Y  +
Sbjct: 241 LKVSPHTFRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVT----KDHLRYVYLHS 296

Query: 318 HPSI 321
           HP  
Sbjct: 297 HPRA 300


>gi|163803381|ref|ZP_02197257.1| tyrosine recombinase [Vibrio sp. AND4]
 gi|159172843|gb|EDP57685.1| tyrosine recombinase [Vibrio sp. AND4]
          Length = 305

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 91/306 (29%), Positives = 151/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + +ERGLS+ TL SY  D  + L+++  +         +  +S + ++ + S 
Sbjct: 15  VEQFLDAMWMERGLSENTLASYRNDLMKLLVWMEQHCYH------LSFISLSGLQEYQSY 68

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    S  R LS I+   +Y+ + K+ ++     + + K    LP+ ++E+Q   L
Sbjct: 69  LVDLDYKQTSRARMLSAIRRLFQYIHREKVRSDDPSALLVSPKLPQRLPKDISEEQVDAL 128

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D            I+ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG K 
Sbjct: 129 LD-----APDPNDPIELRDKAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGGKE 183

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +    I  +     P  L       +F   R + +    F   I+      G+
Sbjct: 184 RLVPMGENAVDWIETFIKQGRPALLGEKTSDVVFPSKRARQMTRQTFWHRIKHYAVIAGI 243

Query: 257 PL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +I+ 
Sbjct: 244 DTGHLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIHS 299

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 300 QHHPRA 305


>gi|239787464|emb|CAX83935.1| Tyrosine recombinase XerC subunit [uncultured bacterium]
          Length = 321

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 102/317 (32%), Positives = 166/317 (52%), Gaps = 14/317 (4%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             + + ++L +ER LS  T+ +Y  D   F  +        +T + +RQ+   ++RAF+ 
Sbjct: 7   HAEAFRRHLAVERRLSPNTVSAYLRDLELFGRYWCQRHGGGLTEEQLRQMRPEDLRAFMG 66

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             + +     +L+R ++ ++++ +YL++  +   +    + + K++  LPRA  E+    
Sbjct: 67  MGQREGAAKSTLQRRMASVRAWFRYLEREGLAENNPAALVASPKQAQRLPRAPTEEDTAR 126

Query: 137 LVDNVLLHTSHETKWIDAR-------NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           L+++  L        +          + AIL LLYG GLRI E   L   ++   Q+ +R
Sbjct: 127 LIES--LPPPGPQSPLTGWARVRLLRDGAILELLYGSGLRIGELCGLDRLDLNLRQAEVR 184

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIR 248
           + GKG K R+VPL     +A+  Y +    +      L P+F G +G  LNP   QR + 
Sbjct: 185 VLGKGGKERLVPLGSMAIQALERYLEARKAEAPPPDHLGPVFTGRQGGRLNPREVQRLVV 244

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +LRR LGLP   T H LRH+FATHLL  G DLRSIQ +LGH  L+TTQ YT+++  N   
Sbjct: 245 KLRRRLGLPEKVTPHALRHAFATHLLQAGADLRSIQEMLGHASLTTTQRYTHLDLAN--- 301

Query: 309 WMMEIYDQTHPSITQKD 325
            + +IYD  HP   ++ 
Sbjct: 302 -LTKIYDAAHPRARRQP 317


>gi|238892411|ref|YP_002917145.1| site-specific tyrosine recombinase XerC [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262040877|ref|ZP_06014103.1| tyrosine recombinase XerC [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|329997490|ref|ZP_08302792.1| tyrosine recombinase XerC [Klebsiella sp. MS 92-3]
 gi|238544727|dbj|BAH61078.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259041766|gb|EEW42811.1| tyrosine recombinase XerC [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328539058|gb|EGF65097.1| tyrosine recombinase XerC [Klebsiella sp. MS 92-3]
          Length = 300

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 86/315 (27%), Positives = 150/315 (47%), Gaps = 17/315 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +    L      +L++L +ER LS +TL +Y+      +        ++  +++  Q   
Sbjct: 1   MTDSPLFSAVARFLRHLGVERQLSPITLLNYQRQLDALIA-----LADEAGLKSWSQCDA 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++R+F  + R   +G  SL   LS ++SF  +L  +   + +    +   K    LP+ 
Sbjct: 56  AQVRSFAVRSRRAGLGPASLALRLSALRSFFDWLVGQGELSANPAKGIAAPKIPRHLPKN 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++      L+D  L         +  R+ A+L ++YG GLR+SE ++L  +++  +   +
Sbjct: 116 IDVDDVNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVNLDIKHLDLESGEV 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +P+  +    I  + DL    L       LF    GK ++    Q+   
Sbjct: 170 WVMGKGSKERRLPIGRNAVAWIEHWLDLRG--LFGTDDDALFLSKLGKRISARNVQKRFA 227

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++   
Sbjct: 228 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 284

Query: 309 WMMEIYDQTHPSITQ 323
            +  +YD  HP   +
Sbjct: 285 -LASVYDAAHPRAKR 298


>gi|254360931|ref|ZP_04977077.1| site-specific recombinase XerD [Mannheimia haemolytica PHL213]
 gi|261493842|ref|ZP_05990354.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261495108|ref|ZP_05991572.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|153092410|gb|EDN73473.1| site-specific recombinase XerD [Mannheimia haemolytica PHL213]
 gi|261309178|gb|EEY10417.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310444|gb|EEY11635.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 297

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 100/311 (32%), Positives = 154/311 (49%), Gaps = 18/311 (5%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            EL    + +L  L  E GLS+ T+ SY  D  +F  + +         +    L + ++
Sbjct: 2   AELDPIIEQFLDTLWQEHGLSENTVASYRSDLERFSDYFSE-------PKAFLSLDHIDL 54

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           + F+ +R  Q     S  R LS ++ F ++L       +   L + + K+  SLP++L+E
Sbjct: 55  QGFLGERLEQGYKATSSARMLSCLRKFFRFLCLEHYRQDDPTLTLSSPKRGASLPKSLSE 114

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            Q + L+D       +    I+ R+ A+L LLY  GLR++E +SL+  NI   Q  +RI 
Sbjct: 115 DQVMDLLD-----APNTLDPIELRDKAMLELLYATGLRVTELVSLSMDNISLKQGVVRII 169

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           GKGDK R+VPL       I E++    P  LN      +F   RG+ +    F   I+  
Sbjct: 170 GKGDKERLVPLGEEANYWIQEFFQYGRPILLNNQQSDVVFPSRRGQQMTRQTFWHRIKHY 229

Query: 251 RRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
               G+     + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT V        
Sbjct: 230 AVLAGIDADKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTQVAKAR---- 285

Query: 310 MMEIYDQTHPS 320
           +  ++ Q HP 
Sbjct: 286 LKSLHQQFHPR 296


>gi|120404256|ref|YP_954085.1| site-specific tyrosine recombinase XerD [Mycobacterium vanbaalenii
           PYR-1]
 gi|119957074|gb|ABM14079.1| tyrosine recombinase XerD subunit [Mycobacterium vanbaalenii PYR-1]
          Length = 317

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 85/321 (26%), Positives = 145/321 (45%), Gaps = 19/321 (5%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
              L  + Q +L +L IERG++  TL SY  D R++   LA        +  +  ++  +
Sbjct: 7   PAALDDQFQGYLDHLAIERGVAANTLSSYRRDLRRYAEHLASR-----GVTDLAGVAEAD 61

Query: 71  IRAFISKRRTQK-------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           +  F+   R          +   S  R++  ++   ++     ITT      ++      
Sbjct: 62  VSEFLVSLRRGDPDNGVVPLSAVSAARAVIAVRGLHRFAAAEGITTVDVAREVKPPTPGR 121

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            LP++L+  + L L++            +  RN A+L LLY  G RISEA+ L   ++  
Sbjct: 122 RLPKSLSIDEVLALLEA-AGGDGEADGPLTLRNRALLELLYSTGARISEAVGLDVDDVDT 180

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPG 241
           +  ++ ++GKG K R++P+      A+  Y      DL    +    +F   RG  L+  
Sbjct: 181 EARSVLLRGKGGKQRLIPIGRPAVSALDNYLVRGRPDLARRGRGTPAIFLNARGGRLSRQ 240

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              + ++      G+  + + H LRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V
Sbjct: 241 SAWQVLQDAAERAGITATVSPHVLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMV 300

Query: 302 NSKNGGDWMMEIYDQTHPSIT 322
                   + E++   HP   
Sbjct: 301 T----VTALREVWAGAHPRAR 317


>gi|82751090|ref|YP_416831.1| site-specific recombinase [Staphylococcus aureus RF122]
 gi|82656621|emb|CAI81047.1| site-specific recombinase [Staphylococcus aureus RF122]
          Length = 295

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 96/305 (31%), Positives = 160/305 (52%), Gaps = 15/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+ ++IE+GLS  T+ +Y  D +++  ++  +      I  I  +    I+  +  
Sbjct: 5   IEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHH-----ISHIDFIDRQLIQECLGH 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q    +S+ R +S I+SF ++  + K   +   + + + K    LP  LN  + L L
Sbjct: 60  LIDQGQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLAL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++ + L+     K    R+  +L LLY  G+R+SE + L  +N+      +R+ GKGDK 
Sbjct: 120 LETLDLN-----KINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKE 174

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVPL  +V + +  Y   + P  L   +   LF  + GKPL+     + I+Q      +
Sbjct: 175 RIVPLGDAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y+Q
Sbjct: 235 KKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYNQ 290

Query: 317 THPSI 321
            HP  
Sbjct: 291 FHPRA 295


>gi|194367246|ref|YP_002029856.1| site-specific tyrosine recombinase XerC [Stenotrophomonas
           maltophilia R551-3]
 gi|194350050|gb|ACF53173.1| tyrosine recombinase XerC [Stenotrophomonas maltophilia R551-3]
          Length = 296

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 89/314 (28%), Positives = 156/314 (49%), Gaps = 21/314 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +   Q +LQ+L++ER +S  TL +Y  D     ++             +  L    +R F
Sbjct: 1   MSAVQAFLQHLQVERRMSAHTLDAYRRDLDALSVWAEPRGM------AVEALDAETLRQF 54

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++    + +  +SL+R LS  +SF  +L K      +    ++  +    LP+ L+  +A
Sbjct: 55  VADEHRRGLSAKSLQRRLSACRSFYAWLLKHGRIEVNPAATLKAPRAPRRLPQVLDADEA 114

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           + LV+            +  R+ A+L L Y  GLR+SE  +LT +++      + + GKG
Sbjct: 115 VQLVEL------EPEGELGRRDRALLELFYSSGLRLSEVCALTWRDLDFASGLVNVMGKG 168

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           ++ R VP     R+A+  +      +      +P+F G R  P++    Q  IRQL +  
Sbjct: 169 NRQRRVPFGRPAREALQAWR----AESGGGPAMPVFPG-RNGPISQRAVQIRIRQLAQRQ 223

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           GL      H LRHSFA+H+L + GDLR +Q +LGH  ++TTQIYT+++ ++    + ++Y
Sbjct: 224 GLFKHVHPHMLRHSFASHILESSGDLRGVQELLGHADIATTQIYTHLDFQH----LAKVY 279

Query: 315 DQTHPSITQKDKKN 328
           D  HP   ++ K +
Sbjct: 280 DAAHPRAKRRSKDD 293


>gi|295692872|ref|YP_003601482.1| tyrosine recombinase xerd [Lactobacillus crispatus ST1]
 gi|295030978|emb|CBL50457.1| Tyrosine recombinase xerD [Lactobacillus crispatus ST1]
          Length = 301

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 98/324 (30%), Positives = 169/324 (52%), Gaps = 26/324 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ME NNL +        +  ++L+  ++ERGLS  T+ +Y  D  +F  F+          
Sbjct: 1   MEKNNLKD--------QIDDYLRYSQVERGLSDNTINAYRQDLEEFRTFVENEGMASWPT 52

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           +       +++ AF++++R       S+ R +S ++ F ++L ++ I   + +L +   K
Sbjct: 53  E------ASDVDAFLARQRDLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPK 106

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K   LP AL++ +   L++       +  + +  R+ AIL  LY  G+R+SE ++L  Q+
Sbjct: 107 KERRLPTALSQAEMNRLLEQ-----PNTKRKLGIRDRAILETLYATGMRVSELINLELQD 161

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIRGKP 237
           + D+   +R+ GKG+K R++P+ P     I +Y +     L L        +F   RGK 
Sbjct: 162 LHDNLGLVRVLGKGEKERLIPISPVALDWIKKYENEVRDPLILQVGKSDEHIFLNNRGKK 221

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +      + I++  +   +    T HTLRH+FATHLL NG DLR +Q ILGH  +STTQI
Sbjct: 222 ITRQAIWQMIKKYCQMAAITKDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQI 281

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSI 321
           YTN++ K     ++ +Y +THP +
Sbjct: 282 YTNLSQKQ----ILNVYQKTHPRL 301


>gi|237746680|ref|ZP_04577160.1| site specific integrase/recombinase [Oxalobacter formigenes HOxBLS]
 gi|229378031|gb|EEO28122.1| site specific integrase/recombinase [Oxalobacter formigenes HOxBLS]
          Length = 326

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 97/328 (29%), Positives = 157/328 (47%), Gaps = 29/328 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L  L  +R LS  TL SY  D  Q          E      + +LS T+IR F+S+
Sbjct: 11  VKSYLDTLSGQRKLSGNTLDSYRRDLAQL--------TEMAGETGLNRLSSTDIRRFVSR 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +  RS+ R LS  + F ++L    + + +   ++   KKS  LP+AL+   A+ L
Sbjct: 63  LHASGLSPRSIGRKLSAWRGFFQWLVDEALLSTNPAEDIHAPKKSKPLPKALSVDDAVRL 122

Query: 138 VDNVLLHTSHET--KWIDARNSAILYLLYGCGLRISEALSLTPQ-----------NIMDD 184
           V +    T+  +  +     + A+  LLY  GLR+SE   L  Q            I  +
Sbjct: 123 VSSGPADTNASSAGQAAALCDRAMFELLYSSGLRVSELTGLDIQAVRQAGYVSAGWIDLN 182

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC----PFDLNLNIQLPLFRGIRGKPLNP 240
           +  + + GKG+K RIVP   +   A+  +          +        LF   RGK ++P
Sbjct: 183 EKEVTVTGKGNKTRIVPAGDAAITAVRNWLAARDNLVHPEALPRDAFALFVNSRGKRISP 242

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              Q  ++   + LGLP++   H LRHSFA+H+L + GDLR++Q +LGH  +++TQIYT 
Sbjct: 243 RQVQLRLKAHAKRLGLPVNVHPHVLRHSFASHILQSSGDLRAVQEMLGHSSIASTQIYTA 302

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           ++ ++    +  +YD  HP    K   N
Sbjct: 303 LDFQH----LAAVYDSAHPRAKTKKSGN 326


>gi|229031461|ref|ZP_04187461.1| Tyrosine recombinase xerC [Bacillus cereus AH1271]
 gi|228729750|gb|EEL80730.1| Tyrosine recombinase xerC [Bacillus cereus AH1271]
          Length = 299

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 156/309 (50%), Gaps = 17/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R ++
Sbjct: 5   KLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYL 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +K+  +S+ R +S ++S  ++L +     ++        KK  S+P+ L  ++  
Sbjct: 60  TTLHDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELE 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L +      S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG 
Sbjct: 120 ELFE-----VSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGK 174

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRR 252
           K R +P     + A++ Y +     L    +     +F   +G PL     +  + +L +
Sbjct: 175 KQRYIPFGSYAQDALITYIENGRKQLAHKTEEHSHMVFLNAKGTPLTSRGVRYVLNELIK 234

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +     +  
Sbjct: 235 KASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER----LRS 290

Query: 313 IYDQTHPSI 321
           +Y + HP  
Sbjct: 291 VYMKHHPRA 299


>gi|156740074|ref|YP_001430203.1| integrase family protein [Roseiflexus castenholzii DSM 13941]
 gi|254799355|sp|A7NFG3|XERC_ROSCS RecName: Full=Tyrosine recombinase xerC
 gi|156231402|gb|ABU56185.1| integrase family protein [Roseiflexus castenholzii DSM 13941]
          Length = 314

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 94/308 (30%), Positives = 156/308 (50%), Gaps = 19/308 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           ++ + +L++L  ER LS  T+ +Y  D  QF  FL         +     +++ ++ AF+
Sbjct: 3   EQVEAFLRHLADERNLSANTIAAYRTDLEQFCEFL-----HGRRLFAWHDVTHDDVLAFL 57

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
              R ++    ++ R ++ +KSF  +L  R I        + + K    LPRAL  +Q  
Sbjct: 58  IDLRERRYASSTVARRVAAVKSFFTFLTGRGIVQRDPTERIDSPKVDRDLPRALTPRQVD 117

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L++  L   + E      R+ A+L LLY  G+R+SE ++L   ++  +++ +R  GK  
Sbjct: 118 ELLELPLRSPTPER----IRDKAMLELLYATGVRVSELVALNVNDVDLERNEVRCIGKNG 173

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLN---IQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           ++R++P+  S   A+ EY+D+    L          LF   RGK L    F   ++Q   
Sbjct: 174 RVRVLPINGSAATALEEYFDISRNQLARGSGSSTEALFLNHRGKRLTRQGFWLILKQYAE 233

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            LGL    T H LRHSFA H+L+ G DLR++Q +LGH  +STTQIYT++N ++       
Sbjct: 234 ELGLS-DLTPHVLRHSFAVHMLNAGFDLRAVQELLGHTSISTTQIYTHLNHESSHTP--- 289

Query: 313 IYDQTHPS 320
                HP+
Sbjct: 290 ---HAHPA 294


>gi|228902334|ref|ZP_04066491.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 4222]
 gi|228966776|ref|ZP_04127820.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228792875|gb|EEM40433.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228857303|gb|EEN01806.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 4222]
          Length = 299

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 87/309 (28%), Positives = 155/309 (50%), Gaps = 17/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R ++
Sbjct: 5   KLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYL 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +K+  +S+ R +S ++S  ++L +     ++        KK  S+P+ L  ++  
Sbjct: 60  TTLHDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELE 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L +      S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG 
Sbjct: 120 ELFE-----VSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGK 174

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRR 252
           K R +P     + +++ Y +     L          +F   +G PL     +  + +L +
Sbjct: 175 KQRYIPFGSYAQDSLITYIENGRKQLVNKTDEDSRMVFLNAKGTPLTSRGVRYVLNELIK 234

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +     +  
Sbjct: 235 KASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER----LRS 290

Query: 313 IYDQTHPSI 321
           +Y + HP  
Sbjct: 291 VYMKHHPRA 299


>gi|228922585|ref|ZP_04085885.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837014|gb|EEM82355.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 299

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 86/309 (27%), Positives = 155/309 (50%), Gaps = 17/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R ++
Sbjct: 5   KLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYL 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +K+  +S+ R +S ++S  ++L +     ++        KK  S+P+ L  ++  
Sbjct: 60  TTLHDEKLARKSVARKVSSLRSLYRFLIREGYRKDNPFALASLPKKELSIPKFLYAEELE 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L +      S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG 
Sbjct: 120 ELFE-----VSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGK 174

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K R +P     + +++ Y +     L          +F   +G PL     +  + ++ +
Sbjct: 175 KQRYIPFGSYAQDSLITYIENGRKQLVNKTDEDSHMVFLNAKGTPLTSRGVRYVLNEIIK 234

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +     +  
Sbjct: 235 KASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER----LRS 290

Query: 313 IYDQTHPSI 321
           +Y + HP  
Sbjct: 291 VYMKHHPRA 299


>gi|229019026|ref|ZP_04175867.1| Tyrosine recombinase xerC [Bacillus cereus AH1273]
 gi|229025272|ref|ZP_04181692.1| Tyrosine recombinase xerC [Bacillus cereus AH1272]
 gi|228736025|gb|EEL86600.1| Tyrosine recombinase xerC [Bacillus cereus AH1272]
 gi|228742266|gb|EEL92425.1| Tyrosine recombinase xerC [Bacillus cereus AH1273]
          Length = 302

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 156/309 (50%), Gaps = 17/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R ++
Sbjct: 8   KLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYL 62

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +K+  +S+ R +S ++S  ++L +     ++        KK  S+P+ L  ++  
Sbjct: 63  TTLHDEKLARKSVARKVSSLRSLYRFLMREGYQKDNPFALASLPKKELSIPKFLYAEELE 122

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L +      S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG 
Sbjct: 123 ELFE-----VSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGK 177

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRR 252
           K R +P     + A++ Y +     L    +     +F   +G PL     +  + +L +
Sbjct: 178 KQRYIPFGSYAQDALITYIENGRKQLIQKTEEHSHMVFLNAKGTPLTDRGVRYVLNELIK 237

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +     +  
Sbjct: 238 KASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER----LRS 293

Query: 313 IYDQTHPSI 321
           +Y + HP  
Sbjct: 294 VYMKHHPRA 302


>gi|323495869|ref|ZP_08100937.1| site-specific tyrosine recombinase XerD [Vibrio sinaloensis DSM
           21326]
 gi|323319085|gb|EGA72028.1| site-specific tyrosine recombinase XerD [Vibrio sinaloensis DSM
           21326]
          Length = 302

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 92/318 (28%), Positives = 156/318 (49%), Gaps = 18/318 (5%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           + E++S +     + +L  + +ERGLS+ TL SY  D  + L +++ +         +  
Sbjct: 1   MSEVMSPD-QGIVEQFLDAMWMERGLSENTLASYRNDLMKLLQWMSSHNYR------LDF 53

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +S + ++ + +    +     S  R LS I+   +YL + K   +     + + K    L
Sbjct: 54  ISLSGLQEYQTWLVDEGYKQTSRARMLSAIRRLFQYLHREKRRADDPSALLVSPKLPKRL 113

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P+ L+E+Q   L+D            ++ R+ A+L LLY  GLR++E +SLT +NI   Q
Sbjct: 114 PKDLSEQQVDALLD-----APDPNDPMELRDKAMLELLYATGLRVTELVSLTMENISLRQ 168

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
             +R+ GKG K R+VP+  +    I  +        L  N    +F   R + +    F 
Sbjct: 169 GVVRVTGKGGKERLVPMGENAVDWIETFLQQGRSELLGENTSDVVFPSKRARQMTRQTFW 228

Query: 245 RYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             I+      G+     + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V +
Sbjct: 229 HRIKHYAVIAGIDADKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVAT 288

Query: 304 KNGGDWMMEIYDQTHPSI 321
           +     + +++ + HP  
Sbjct: 289 ER----LKQLHSEHHPRA 302


>gi|251796343|ref|YP_003011074.1| tyrosine recombinase XerD [Paenibacillus sp. JDR-2]
 gi|247543969|gb|ACT00988.1| tyrosine recombinase XerD [Paenibacillus sp. JDR-2]
          Length = 296

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 86/310 (27%), Positives = 146/310 (47%), Gaps = 16/310 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + ++++Q L  ER LS  TL+SY  D +  L +L     E+ +I  +  +    +  
Sbjct: 1   MKAQVESFIQYLMNERALSSSTLESYGRDLQGLLDYL-----EQQSIANVADVHRHHLSH 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++ + +       ++ R ++ I++F  YL        +  + + + K+    P  L+ + 
Sbjct: 56  YLLRLKESGRKTSTVSRHIASIRAFFHYLAVNGYIQLNPAIYIESPKQEKKEPSVLSMEN 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           A  L++     T         R+ A+L LLY  G+R+SE +SL   ++    + +R  G 
Sbjct: 116 AGLLLE-----TPQPVTAAGKRDKAMLELLYATGIRVSELISLNVDSVNSQLNIIRCVGS 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G K RI+P       A+ +Y      +L      +  LF    G  +    F + +++  
Sbjct: 171 GMKERIIPFGRMAAAALDDYLQNGRAELLRQSEDEPALFLNQLGTRMTRQGFWKMVKKYA 230

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +  G+    T HTLRHSFA HLL NG DLR++Q +LGH  +STTQ YT V+       M 
Sbjct: 231 KEAGISEEITPHTLRHSFAAHLLENGADLRAVQELLGHADISTTQRYTKVS----KVKMK 286

Query: 312 EIYDQTHPSI 321
           +IY   HP  
Sbjct: 287 DIYSNAHPRA 296


>gi|88706916|ref|ZP_01104615.1| Tyrosine recombinase xerD [Congregibacter litoralis KT71]
 gi|88698838|gb|EAQ95958.1| Tyrosine recombinase xerD [Congregibacter litoralis KT71]
          Length = 302

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 91/304 (29%), Positives = 147/304 (48%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L  + +E+GLS+ TL +Y  D + F  +           +T  Q+  ++I A+++ 
Sbjct: 13  LESYLDAVWMEKGLSENTLAAYRRDLQAFARWALSRQ------RTATQIERSDIEAYLAS 66

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +K   RS  R+LS ++ F +YL +         L + + +    LP+ L+E     L
Sbjct: 67  LLEKKSSPRSAARALSCLRGFYRYLLRSGQLDTDPTLGLDSPRLGRPLPKTLSEVDVDAL 126

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +             I  R+  +L LLY CGLR+SE   LT   +  +Q  LRI GKG K 
Sbjct: 127 L-----KAPKLDDPIGFRDRCMLELLYACGLRVSELTGLTLSQLSLNQGVLRIVGKGGKE 181

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  +   + P  L       LF   R + +    F   I+Q     G+
Sbjct: 182 RLVPIGEEALHWLQRFLRDVRPELLGETSSDVLFPSRRAREMTRQTFWHRIKQHAMTAGI 241

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++ +
Sbjct: 242 RKPISPHVLRHAFATHLVNHGADLRVVQLLLGHSDLSTTQIYTHVARQR----LQSLHAK 297

Query: 317 THPS 320
            HP 
Sbjct: 298 HHPR 301


>gi|218235700|ref|YP_002368632.1| site-specific tyrosine recombinase XerC [Bacillus cereus B4264]
 gi|229111302|ref|ZP_04240855.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-15]
 gi|229129107|ref|ZP_04258080.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-Cer4]
 gi|229146402|ref|ZP_04274773.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST24]
 gi|229152030|ref|ZP_04280225.1| Tyrosine recombinase xerC [Bacillus cereus m1550]
 gi|296504326|ref|YP_003666026.1| site-specific tyrosine recombinase [Bacillus thuringiensis BMB171]
 gi|218163657|gb|ACK63649.1| tyrosine recombinase XerC [Bacillus cereus B4264]
 gi|228631379|gb|EEK88013.1| Tyrosine recombinase xerC [Bacillus cereus m1550]
 gi|228637035|gb|EEK93494.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST24]
 gi|228654344|gb|EEL10209.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-Cer4]
 gi|228672078|gb|EEL27369.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-15]
 gi|296325378|gb|ADH08306.1| site-specific tyrosine recombinase [Bacillus thuringiensis BMB171]
          Length = 299

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 87/309 (28%), Positives = 155/309 (50%), Gaps = 17/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R ++
Sbjct: 5   KLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYL 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +K+  +S+ R +S ++S  ++L +     ++        KK  S+P+ L  ++  
Sbjct: 60  TTLHDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELE 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L +      S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG 
Sbjct: 120 ELFE-----VSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGK 174

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K R +P     + +++ Y +     L          +F   +G PL     +  + +L +
Sbjct: 175 KQRYIPFGSYAQDSLITYIENGRKQLVNKTDEDSHMVFLNAKGTPLTSRGVRYVLNELIK 234

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +     +  
Sbjct: 235 KASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER----LRS 290

Query: 313 IYDQTHPSI 321
           +Y + HP  
Sbjct: 291 VYMKHHPRA 299


>gi|319785871|ref|YP_004145346.1| tyrosine recombinase XerC [Pseudoxanthomonas suwonensis 11-1]
 gi|317464383|gb|ADV26115.1| tyrosine recombinase XerC [Pseudoxanthomonas suwonensis 11-1]
          Length = 291

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 89/307 (28%), Positives = 155/307 (50%), Gaps = 20/307 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q++L++L +ER +S  TL +Y  D +    +     E       + ++    +R F++ 
Sbjct: 4   IQDFLEHLRVERAMSPHTLDAYRRDLQALQDWAFERGE------DVVRMDGGRLREFVAS 57

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + +   SL+R LS  +S+  +L K  +   S  + +R  +    LP+ L+  +A+ L
Sbjct: 58  EHRRGLSPTSLQRRLSACRSYYAWLLKHGVIEASPAIGLRAPRAPRKLPQVLDVDEAVQL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           V+         +  +  R+ A+L L Y  GLR+SE  +L  +++  DQ  + + GKG + 
Sbjct: 118 VEV------DTSAPLGLRDRALLELFYSSGLRLSELCALRWRDLHLDQGLVTVLGKGSRQ 171

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R VP+    R+A+ E+               +F G  G P++    Q  +RQL    GL 
Sbjct: 172 RSVPVGSHARRALEEWRS----STGAGSDDFVFPGRGGGPISQRAVQVRMRQLAARQGLF 227

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRHSFA+H+L + GDLR +Q +LGH  ++TTQIYT+++ ++    + ++YD  
Sbjct: 228 KHVHPHMLRHSFASHVLESSGDLRGVQELLGHADIATTQIYTHLDFQH----LAKVYDAA 283

Query: 318 HPSITQK 324
           HP   +K
Sbjct: 284 HPRAKRK 290


>gi|163733501|ref|ZP_02140944.1| site-specific tyrosine recombinase XerC [Roseobacter litoralis Och
           149]
 gi|161393289|gb|EDQ17615.1| site-specific tyrosine recombinase XerC [Roseobacter litoralis Och
           149]
          Length = 306

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 128/312 (41%), Positives = 183/312 (58%), Gaps = 9/312 (2%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S       QNWL +    +G ++ TL +Y+ D   FL F+  +      +  +  +S T
Sbjct: 4   ISPAATDALQNWLAHQRAIKGAAENTLIAYQGDVIDFLSFITAHKGAPQGLGALADISVT 63

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++RA++++ R   +  RSL R LS +K+F K+L  R+    + +L+ R  K    LPR L
Sbjct: 64  DMRAWMAQTRETGVAARSLARKLSAVKAFYKWLALREGFEPTAVLSTRAPKFQKKLPRPL 123

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
               A  L+D + + + H   W+ AR+ A++ LL+GCGLRISEALSL         +TLR
Sbjct: 124 APDAARNLIDAIEIQSQHP--WVCARDVAVVTLLWGCGLRISEALSLAAA-DAPLPATLR 180

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           I GKG K RIVP+LP+ R A+  Y  +CP       + PLFR +RG PL PG  Q+ +  
Sbjct: 181 ITGKGGKERIVPVLPAARDAVDAYVRMCPHPQTA--EAPLFRAVRGGPLRPGTIQKVMAA 238

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            R  LGLP + T H +RHSFATHLL+ GGDLR+IQ +LGH  LSTTQ YT V++      
Sbjct: 239 ARMQLGLPATATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTAVDTVR---- 294

Query: 310 MMEIYDQTHPSI 321
           +M++YD+THP  
Sbjct: 295 LMKVYDRTHPKA 306


>gi|332559009|ref|ZP_08413331.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides
           WS8N]
 gi|332276721|gb|EGJ22036.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides
           WS8N]
          Length = 306

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 131/313 (41%), Positives = 183/313 (58%), Gaps = 10/313 (3%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
            +        + WL +     G S  T+++Y  D   +L FLA +  E   ++ +  + +
Sbjct: 4   AIPPAARDALEAWLTHQRAIEGASAHTIRAYAADVTGWLAFLAGHLGEGYGLKMLASVPH 63

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++RA+++  R + +G RSL RSLS ++ F  +L +R+    + +L+ R  K    LPR 
Sbjct: 64  ADLRAWMAHERARGLGARSLARSLSAVRQFTGWLAEREGVDATAVLSARGPKFRRKLPRP 123

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+E  A  L+  V    + +  WI AR+ A++ LLYGCGLRISEAL L        +  L
Sbjct: 124 LSEADAKALLSTVAEEAAED--WIRARDLAVVTLLYGCGLRISEALGLPGTAHPLPE-VL 180

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI+GKGDK R+VP LP  R+A+  Y  LCPFDL   +   LFRG RG PLNP +  R + 
Sbjct: 181 RIRGKGDKERLVPSLPVAREAVARYAALCPFDLASGV---LFRGARGGPLNPRLVARTME 237

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           + R  LGLP + T H LRHSFATHLL+ GGDLRSIQ +LGH  LSTTQ+YT V+    G 
Sbjct: 238 RARATLGLPPTATPHALRHSFATHLLNAGGDLRSIQELLGHASLSTTQVYTAVD----GA 293

Query: 309 WMMEIYDQTHPSI 321
            +ME+Y + HP  
Sbjct: 294 RLMEVYAKAHPRA 306


>gi|229174497|ref|ZP_04302029.1| Tyrosine recombinase xerC [Bacillus cereus MM3]
 gi|228609057|gb|EEK66347.1| Tyrosine recombinase xerC [Bacillus cereus MM3]
          Length = 299

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 87/309 (28%), Positives = 156/309 (50%), Gaps = 17/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R ++
Sbjct: 5   KLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYL 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +K+  +S+ R +S ++S  ++L +     ++        KK  S+P+ L  ++  
Sbjct: 60  TTLHDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELE 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L +      +     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG 
Sbjct: 120 ELFE-----VADTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGK 174

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRR 252
           K R +P     + A++ Y +     L    +     +F   +G PL     +  + +L +
Sbjct: 175 KQRYIPFGSYAQDALITYIENGRKQLAHKTEEHSHMVFLNAKGTPLTSRGVRYVLNELIK 234

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +     +  
Sbjct: 235 KASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER----LRS 290

Query: 313 IYDQTHPSI 321
           +Y + HP  
Sbjct: 291 VYMKHHPRA 299


>gi|261250247|ref|ZP_05942823.1| site-specific recombinase XerD [Vibrio orientalis CIP 102891]
 gi|260939363|gb|EEX95349.1| site-specific recombinase XerD [Vibrio orientalis CIP 102891]
          Length = 302

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 88/306 (28%), Positives = 150/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + +ERGLS+ TL SY  D  + L +++    +      +  +S + ++ + + 
Sbjct: 12  VEQFLDAMWMERGLSENTLASYRTDLVKLLRWMSTNNYK------LDFISLSGLQEYQAW 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S  R LS I+   +YL + K+  +     + + K    LP+ L+E+Q   L
Sbjct: 66  LVDEGYKQTSRARMLSAIRRLFQYLHREKVRGDDPSALLVSPKLPKRLPKDLSEEQVDAL 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D            ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG K 
Sbjct: 126 LD-----APDPNDAMELRDKAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGGKE 180

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +    I  +        L       +F   R + +    F   I+      G+
Sbjct: 181 RLVPMGENAVDWIETFLQQGRSELLGETTSDVVFPSKRARQMTRQTFWHRIKHYAVVAGI 240

Query: 257 PLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 241 DTEQLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHS 296

Query: 316 QTHPSI 321
           + HP  
Sbjct: 297 EHHPRA 302


>gi|86159117|ref|YP_465902.1| tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775628|gb|ABC82465.1| Tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 342

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 97/318 (30%), Positives = 143/318 (44%), Gaps = 19/318 (5%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
                EL +E + +   L  E+  S  T ++Y+ D  Q+  +LA         Q +   S
Sbjct: 5   AAAPTELPEELRRFDAYLASEKRASPHTRKAYQVDLAQYAAYLADQG------QPLVPSS 58

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
              +R F++ R+    G  SL R LS ++S  ++L +  +   +    + + K+   LP 
Sbjct: 59  PALVRGFLA-RQAGAAGAVSLGRKLSALRSLYRFLVREGLAPGNPARAVASPKRPKRLPE 117

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L E++   LV+            +  R+ A L LLYG GLR+SE   L  +++      
Sbjct: 118 VLPEEEVAALVETPDAA---GEAPLALRDRAFLELLYGSGLRVSELTGLDLEDLDLAGGL 174

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGV 242
           +R+ GK +K RIVP      +A+  Y D     L            +F   RG  L    
Sbjct: 175 VRVLGKRNKERIVPFGAPAAEALRRYLDGARPVLAAGPDHAGAAEAVFLNFRGGRLTSRS 234

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             R +       GLP     H LRH FATHLL NG DLR IQ +LGH  LSTTQ YT+++
Sbjct: 235 VARRLDGWVLASGLPRHVHPHVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTHLD 294

Query: 303 SKNGGDWMMEIYDQTHPS 320
            K     +  +YD  HP 
Sbjct: 295 WKR----LAAVYDAAHPR 308


>gi|148266023|ref|YP_001232729.1| tyrosine recombinase XerC [Geobacter uraniireducens Rf4]
 gi|146399523|gb|ABQ28156.1| tyrosine recombinase XerD subunit [Geobacter uraniireducens Rf4]
          Length = 294

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 96/309 (31%), Positives = 150/309 (48%), Gaps = 16/309 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +  + + + L  ER +S  TL +Y  D  QFL F+     E+     +  +++  IR 
Sbjct: 1   MKQAIEQFCRYLSTERNVSPHTLGAYRSDLEQFLAFI---DREQRPGADVNSVTHLLIRR 57

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++++         S+ R L+ I++F +YL +  +  ++    +   K    +P  LN  +
Sbjct: 58  YMAQLHKDHQK-SSIGRKLAAIRAFFRYLLREGLAAKNPAELVSTPKMEKKVPFHLNIDE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              LV+            +  RN AIL  LY CG+R+SE   L   ++  D+   R+ GK
Sbjct: 117 VTALVE-----APQSADSLSLRNRAILETLYSCGIRVSELTGLNVGDVDMDERLARVLGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K RIVP+    R A+  Y        N ++  PL    RG  L      R I +    
Sbjct: 172 GNKERIVPVGTYARNALAAYLASRN---NPSMDAPLILNARGGRLTSRSVARIIDKYIIK 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +      + HTLRH+FATH+L  G DLR+IQ +LGH  LSTTQ YT+V+     D +ME+
Sbjct: 229 IAAMKKVSPHTLRHTFATHMLEGGADLRAIQELLGHSSLSTTQKYTHVS----IDRLMEV 284

Query: 314 YDQTHPSIT 322
           YD+ HP   
Sbjct: 285 YDKAHPKAR 293


>gi|311742411|ref|ZP_07716220.1| tyrosine recombinase XerD [Aeromicrobium marinum DSM 15272]
 gi|311314039|gb|EFQ83947.1| tyrosine recombinase XerD [Aeromicrobium marinum DSM 15272]
          Length = 310

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 95/314 (30%), Positives = 157/314 (50%), Gaps = 19/314 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +   ++L +L +ERGL+  TL SY  D R++L +LA    E+       +++  ++  F+
Sbjct: 10  QAVADYLSHLGVERGLADNTLLSYRRDLRRYLGYLAEIGREQ-----PDEITEADLLGFV 64

Query: 76  SKRRTQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +  RT       +G  S+ R +  ++   ++  + ++        ++  + +  LP+AL 
Sbjct: 65  ALLRTGDDLTGPLGAASVARHVVTVRGLHRFWLREQLVATDVAGAVKPPRPAQRLPKALA 124

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            +Q   ++D            +  R+ A+L LLYG G RISEA+ +   ++  D+STL +
Sbjct: 125 LEQVEAILD----AAGAPGTRLAQRDRALLELLYGTGARISEAVGIDVDDLDLDESTLLL 180

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQ 249
           +GKG K RIVP+      AI +Y       L+     P LF   RG  L+       + +
Sbjct: 181 RGKGGKHRIVPVGSFAATAIGDYLVGARVALSSTAASPALFLNSRGGRLSRQSAWTVLTR 240

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             R  G+    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V  +     
Sbjct: 241 AARRAGVETDVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVER---- 296

Query: 310 MMEIYDQTHPSITQ 323
           + E+Y   HP   +
Sbjct: 297 LREVYATAHPRAVR 310


>gi|261250028|ref|ZP_05942605.1| tyrosine recombinase XerC [Vibrio orientalis CIP 102891]
 gi|260939532|gb|EEX95517.1| tyrosine recombinase XerC [Vibrio orientalis CIP 102891]
          Length = 310

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 85/324 (26%), Positives = 163/324 (50%), Gaps = 18/324 (5%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M  + +P  +   L +  + + + L  E+GLS  T ++Y+         LA     ++ +
Sbjct: 1   MSESAVP--LPNGLQQPLERFYEYLRSEKGLSLHTQRNYKQQLETMAGHLA-----QLGL 53

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           +  +Q+    +R   SK   + +   SL   LS ++SF  ++  R   + +    +   +
Sbjct: 54  KEWQQVDAGWVRQLASKGMREGMKPSSLATRLSSLRSFFDFMMLRGEMSANPAKGVSAPR 113

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K   LP+ L+  +   L++       +E   +  R+ A++ L+YG GLR++E +S+  ++
Sbjct: 114 KKRPLPKNLDVDEIGQLLEV------NEDDPLAIRDRAMMELMYGAGLRLAELVSINVKD 167

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           +      +R+ GKGDK R VP      + + ++  + P   N + +L LF    G  ++ 
Sbjct: 168 VGLSSGEIRVVGKGDKERKVPFTGMAAEWVSKWLRVRPSLANSD-ELGLFVSKLGVRISH 226

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              Q+ + +  +   +    + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+
Sbjct: 227 RNVQKRMAEWGQKQAVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH 286

Query: 301 VNSKNGGDWMMEIYDQTHPSITQK 324
           ++ ++    + E+YDQ HP   +K
Sbjct: 287 LDFQH----LAEVYDQAHPRAKKK 306


>gi|227879087|ref|ZP_03996976.1| integrase-recombinase [Lactobacillus crispatus JV-V01]
 gi|256843076|ref|ZP_05548564.1| tyrosine recombinase XerD [Lactobacillus crispatus 125-2-CHN]
 gi|256850272|ref|ZP_05555701.1| integrase/recombinase [Lactobacillus crispatus MV-1A-US]
 gi|262046336|ref|ZP_06019298.1| tyrosine recombinase XerD [Lactobacillus crispatus MV-3A-US]
 gi|293379759|ref|ZP_06625891.1| tyrosine recombinase XerD [Lactobacillus crispatus 214-1]
 gi|312977261|ref|ZP_07789009.1| tyrosine recombinase XerD [Lactobacillus crispatus CTV-05]
 gi|227861328|gb|EEJ68958.1| integrase-recombinase [Lactobacillus crispatus JV-V01]
 gi|256614496|gb|EEU19697.1| tyrosine recombinase XerD [Lactobacillus crispatus 125-2-CHN]
 gi|256712909|gb|EEU27901.1| integrase/recombinase [Lactobacillus crispatus MV-1A-US]
 gi|260573207|gb|EEX29765.1| tyrosine recombinase XerD [Lactobacillus crispatus MV-3A-US]
 gi|290923668|gb|EFE00539.1| tyrosine recombinase XerD [Lactobacillus crispatus 214-1]
 gi|310895692|gb|EFQ44758.1| tyrosine recombinase XerD [Lactobacillus crispatus CTV-05]
          Length = 301

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 95/311 (30%), Positives = 164/311 (52%), Gaps = 18/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L  +  ++L+  ++ERGLS  T+ +Y  D  +F  F+          +       +++ A
Sbjct: 6   LKDQIDDYLRYSQVERGLSDNTINAYRQDLEEFQTFVENEGMASWPTE------ASDVDA 59

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F++++R       S+ R +S ++ F ++L ++ I   + +L +   KK   LP AL++ +
Sbjct: 60  FLARQRDLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSQAE 119

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++       +  + +  R+ AIL  LY  G+R+SE ++L  Q++ DD   +R+ GK
Sbjct: 120 MNRLLEQ-----PNTKRKLGIRDRAILETLYATGMRVSELINLELQDLHDDLGLVRVLGK 174

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           G+K R++P+ P     I +Y +     L L        +F   RGK +      + I++ 
Sbjct: 175 GEKERLIPISPVALDWIKKYENEVRDPLILQVGKSDEHIFLNNRGKKITRQAIWQMIKKY 234

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +   +    T HTLRH+FATHLL NG DLR +Q ILGH  +STTQIYTN++ K     +
Sbjct: 235 CQMAAITKDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKQ----I 290

Query: 311 MEIYDQTHPSI 321
           + +Y +THP +
Sbjct: 291 LNVYQKTHPRL 301


>gi|172040772|ref|YP_001800486.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109]
 gi|171852076|emb|CAQ05052.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109]
          Length = 303

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 152/307 (49%), Gaps = 16/307 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+ R+ WL++L +ER LS+ TL SY  DT ++L +L          +++ +L+  +I +F
Sbjct: 10  LQHRERWLRHLRLERNLSRNTLDSYRRDTDRYLAWL--------GARSVTELNTGDIESF 61

Query: 75  ISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++   + + +   +  R L+ +++F ++L    +T      ++    ++ S+P+AL+  +
Sbjct: 62  MASLAKGEGLAASTRARILAAVRNFHRFLTGEGVTEGDVADDVARPGQAASIPKALSIAE 121

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++++           I  R+ A+L +LY  G R+SE L L   ++   +  + ++GK
Sbjct: 122 VTAILESC--PNDDAASLIQIRDRALLEMLYSTGARVSELLGLDVDDVDPTEKLIIVRGK 179

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R+VP+      A+  Y        N      LF    G  +        +  +   
Sbjct: 180 GSKERVVPVGDPALDALQHYLVRVRPAFNKKGSAALFLNRNGGRMGRQSAFNMVSSVSEK 239

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    + H+ RHSFATHLL  G D+R +Q +LGH  + TTQIYT V+     D + E 
Sbjct: 240 AGVA-GVSPHSFRHSFATHLLEGGADIRVVQELLGHSNVVTTQIYTKVSP----DHLREA 294

Query: 314 YDQTHPS 320
           + ++HP 
Sbjct: 295 WSESHPR 301


>gi|319892482|ref|YP_004149357.1| Tyrosine recombinase XerD [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162178|gb|ADV05721.1| Tyrosine recombinase XerD [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323464415|gb|ADX76568.1| tyrosine recombinase XerD [Staphylococcus pseudintermedius ED99]
          Length = 295

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 154/309 (49%), Gaps = 15/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + + R  +L+ ++IE+GLS  T+ +Y  D   +L +LA +      +  +  +    I+ 
Sbjct: 1   MEEIRDEYLRFIQIEKGLSNNTIAAYRRDLNHYLNYLAEHK-----VANLNFVDRQMIQE 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +      +    +++ R  S I+SF ++  +   T+    + +   K    LP  L+  +
Sbjct: 56  WFGFLHDEGRSAKTIARFTSTIRSFHQFALRENYTSHDPTVLIETPKYDRKLPDVLSIAE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+         E+K    R+  +L LLY  G+R+SE +++  ++I      +++ GK
Sbjct: 116 VEQLLM-----APDESKVNGYRDKTMLELLYATGIRVSELINIEVEDINLMMGFVKVFGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K RIVPL  +V   +  Y   + P  L   +   LF  + GKPL+     + I+Q   
Sbjct: 171 GSKERIVPLGETVIDCLTHYIQNIRPQLLKHTVTHVLFLNLHGKPLSRQGVWKMIKQTGV 230

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT++      + + +
Sbjct: 231 KAGIMKRLTPHTLRHSFATHLLENGADLRAVQDMLGHSDISTTQLYTHIT----KNQIRK 286

Query: 313 IYDQTHPSI 321
           IY   HP  
Sbjct: 287 IYQDYHPRA 295


>gi|297584490|ref|YP_003700270.1| tyrosine recombinase XerD [Bacillus selenitireducens MLS10]
 gi|297142947|gb|ADH99704.1| tyrosine recombinase XerD [Bacillus selenitireducens MLS10]
          Length = 296

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 150/309 (48%), Gaps = 14/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +    +   L +E+GLS  T+++Y  D   +L FL    ++   I + + ++   +  
Sbjct: 1   MDRSIDTYTHYLSVEKGLSTKTIEAYAGDLSGYLTFL----QDTYGIFSWKDVNKKHVLH 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++           S+ R+LS IKS   +L   K   E+  +++   +K   LP+ L   +
Sbjct: 57  YLQWMNQSGKASSSISRTLSAIKSLHVFLMLEKEMDENPAVHIERPRKPAILPKTLAISE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L        +   + ID R  A+L +LY  G+R+SE  +L  +++  +   ++  GK
Sbjct: 117 VEALF-----SAAEGNRPIDIRTVAMLEVLYSTGMRVSELCALELKDLNLEMGFVKCTGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G+  RI+PL     +AI  Y     P  +       LF    G  ++   F + IR L  
Sbjct: 172 GNTERIIPLGEFATEAIRIYLDHARPVMMKDKEHHDLFVNHHGHRISRQGFWKLIRSLAT 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    + HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT+++       M +
Sbjct: 232 KAGIQKEISPHTLRHSFATHLLENGADLRSVQEMLGHSDISTTQIYTHISQTR----MRD 287

Query: 313 IYDQTHPSI 321
           +Y + HP  
Sbjct: 288 VYRKHHPRA 296


>gi|238796542|ref|ZP_04640049.1| Tyrosine recombinase xerD [Yersinia mollaretii ATCC 43969]
 gi|238719520|gb|EEQ11329.1| Tyrosine recombinase xerD [Yersinia mollaretii ATCC 43969]
          Length = 299

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 90/306 (29%), Positives = 150/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L +ER L++ TL SY  D      +L  +         + +    E+++F+++
Sbjct: 9   IEQFLDALWLERNLAENTLASYRLDLHALTGWLDHHG------SDLLRAGSQELQSFLAE 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q   L
Sbjct: 63  RIEGGYKATSSARLLSAMRRLFQYLYREKLRDDDPTAALSSPKLPQRLPKDLSEAQVDAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +     +  +    ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K 
Sbjct: 123 L-----NAPNVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKE 177

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       I  Y     P+ +N      LF   R + +    F   I+      G+
Sbjct: 178 RLVPLGEEAVYWIENYMEHGRPWLINGQALDVLFPSNRSQQMTRQTFWHRIKHYAILAGI 237

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 238 DSERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQ 293

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 294 QHHPRA 299


>gi|319407796|emb|CBI81447.1| integrase/recombinase XerC [Bartonella sp. 1-1C]
          Length = 321

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 139/322 (43%), Positives = 197/322 (61%), Gaps = 10/322 (3%)

Query: 2   EGNNLPEIVS-FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           +   +P + +   LL  R+NWL +L   R ++  T  +YE DTRQFL FL  +   +  +
Sbjct: 8   KNEKIPLVPADHTLLIARKNWLDHLIQTRRMALHTAVAYERDTRQFLFFLCQHLGYQPAL 67

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             +  L   ++RA+++ RRTQ I  RSL R+++ ++SF  YL + K+        +R  K
Sbjct: 68  NDLADLHVADLRAYLAYRRTQNISARSLSRNMASLRSFFNYLSREKLVNVPAAKLVRTPK 127

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
              SLP+ L  + AL +V     +      WI ARN+AIL LLYGCG+RISEAL+LTP+ 
Sbjct: 128 HRKSLPKPLTIESALRIVKEE--NQQETEPWIIARNTAILILLYGCGMRISEALALTPEQ 185

Query: 181 I-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
                  +L + GKG K R++PL+P V KAI  Y   CP+ L      P+F G+RGKPL 
Sbjct: 186 FADPSIKSLSVTGKGGKTRLIPLIPIVHKAIENYLKCCPYPLV--NTQPIFLGVRGKPLQ 243

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           P + QR ++ LR +LGLP +TT H LRHSFATHLLS GGDLR+IQ +LGH  LSTTQ+YT
Sbjct: 244 PAIIQRAVQNLRAHLGLPETTTPHALRHSFATHLLSRGGDLRTIQELLGHACLSTTQVYT 303

Query: 300 NVNSKNGGDWMMEIYDQTHPSI 321
           ++++ +    ++EIY + HP  
Sbjct: 304 HIDTNH----LLEIYQKAHPRA 321


>gi|254374937|ref|ZP_04990418.1| site specific recombinase XerD [Francisella novicida GA99-3548]
 gi|151572656|gb|EDN38310.1| site specific recombinase XerD [Francisella novicida GA99-3548]
          Length = 292

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 146/308 (47%), Gaps = 18/308 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +      +L NL +E GLS+ T+ SY  D +    + A           +  L + ++ A
Sbjct: 1   MSSAVDAFLDNLWLEHGLSQNTISSYRTDLKFLQNYFAK--------TDLISLDFEQLYA 52

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           FIS R       RS  R +S ++ F  +L     T  +    +   K +  LP+ + E  
Sbjct: 53  FISYRSKNGYSSRSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETD 112

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+          T+ +  R+ A+L L+Y  GLR+SE + L   +I  +   +++ GK
Sbjct: 113 VERLL-----QAPDMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMGK 167

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K RIVP+     + + +Y+      L+ N  +  +F     K +    F   I+    
Sbjct: 168 GSKERIVPIGEYALEYLQKYFAEARMSLSKNFKEKAVFISKHTKRITRQSFWHRIKNYAL 227

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    + HTLRH+FATHLL++G DLRS+Q +LGH  +STT IYT+++       + E
Sbjct: 228 IAGINTDISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR----LQE 283

Query: 313 IYDQTHPS 320
           IY + HP 
Sbjct: 284 IYQKHHPR 291


>gi|253687046|ref|YP_003016236.1| tyrosine recombinase XerD [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753624|gb|ACT11700.1| tyrosine recombinase XerD [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 299

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 94/306 (30%), Positives = 152/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L +ER L++ TL SY  D R    +LA +         + Q    +++AF++ 
Sbjct: 9   IEQFLDALWLERNLAENTLASYRLDLRTLAEWLAHHD------NDLLQAQALDLQAFLAD 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++ F +YL + K+ ++     + + K    LP+ L+E Q   L
Sbjct: 63  RVDGGYKATSSARLLSAMRRFFQYLYREKLRSDDPSAVLSSPKLPQRLPKDLSEAQVDAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +     +     + ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K 
Sbjct: 123 L-----NAPSIEQPLELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVLGKGNKE 177

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       I  Y     P+ LN      LF   R + +    F   I+       +
Sbjct: 178 RLVPLGEEAVYWIEYYLEHGRPWLLNGQTLDVLFPSNRARQMTRQTFWHRIKYYAVLASI 237

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 238 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQ 293

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 294 QHHPRA 299


>gi|145300550|ref|YP_001143391.1| tyrosine recombinase XerC [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142853322|gb|ABO91643.1| tyrosine recombinase XerC [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 322

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 84/316 (26%), Positives = 154/316 (48%), Gaps = 15/316 (4%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E +   L  E   +++ L +ER LS  T  +YE   +     L      ++ +    +L 
Sbjct: 14  EPLPASLADELAAFIEYLRVERQLSPHTRSNYESHLQAMAAELV-----RLGVSDWARLE 68

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
            +++R+ +++     +  RSL   +S ++SF  +  ++   T +    +   K+   LP+
Sbjct: 69  ASQVRSLVTRMHKAGLAPRSLSTKISALRSFCDWQVRQGRLTANPARGIVTPKQGRPLPK 128

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L+  +        LL+ + E   +  R+ AI+ L+Y  GLR++E + L   +I  D   
Sbjct: 129 NLDVDEM-----YQLLNITDEQDPLAVRDRAIMELMYSSGLRLAELVGLNLGDIKLDDRQ 183

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           L++ GKG + R++P+     + + ++  + P  L  +    LF   R + L+    Q  +
Sbjct: 184 LKVTGKGSRERVLPMGRMAVEWLHKWLKVRPL-LAGDEADALFVSKRKQRLSARSVQERL 242

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                   L      H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++  
Sbjct: 243 DGWGNKQALNAHVHPHKLRHSFATHMLESSGDLRAVQELLGHADLSTTQIYTHLDFQH-- 300

Query: 308 DWMMEIYDQTHPSITQ 323
             + ++YD  HP   +
Sbjct: 301 --LAKVYDNAHPRAKR 314


>gi|238792839|ref|ZP_04636470.1| Tyrosine recombinase xerD [Yersinia intermedia ATCC 29909]
 gi|238727947|gb|EEQ19470.1| Tyrosine recombinase xerD [Yersinia intermedia ATCC 29909]
          Length = 299

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 151/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L +ER L++ TL SY  D      +L  +         + +    ++++F+++
Sbjct: 9   IEQFLDALWLERNLAENTLASYRLDLHALTGWLEHHG------SDLLRAGSQDLQSFLAE 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q   L
Sbjct: 63  RIEGGYKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDRL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +     ++ +    ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K 
Sbjct: 123 L-----NSPNVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKE 177

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       I  Y     P+ +N      LF   R + +    F   I+      G+
Sbjct: 178 RLVPLGEEAVYWIENYMEHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGI 237

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 238 DSERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQ 293

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 294 QHHPRA 299


>gi|114319227|ref|YP_740910.1| tyrosine recombinase XerC [Alkalilimnicola ehrlichii MLHE-1]
 gi|114225621|gb|ABI55420.1| tyrosine recombinase XerC [Alkalilimnicola ehrlichii MLHE-1]
          Length = 304

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 92/310 (29%), Positives = 160/310 (51%), Gaps = 15/310 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L  + +++L +L  ERGLS  TLQ+Y+ D  +F  + A     +  +     +S  +IR 
Sbjct: 4   LDDDIRHFLHHLRYERGLSPHTLQAYQRDLTRFHHWCA-----ENGLADRDAVSAHDIRR 58

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F + R  Q +   S++R+LS ++S  +YL +    T +    +   ++   LP  L+  +
Sbjct: 59  FAAARHRQGLAPGSVQRTLSSLRSLFRYLVREGRLTGNPAEGVAAPRRPRRLPGVLSPDE 118

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           A  L++      S E   +  R+ A+  L+Y  GLR++EA+ L    +   +  + + GK
Sbjct: 119 AARLLEG-----SPEDDPLALRDRALYELIYSSGLRLAEAVGLDLGRLDLTEGLVEVVGK 173

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R VP+    R+A+  +  + P  L    +  +F   RG  L+    Q  + +L   
Sbjct: 174 GAKTRRVPVGGKAREALQAWLAVRP-ALAGADEPAVFVSQRGGRLSARSVQARLARLATL 232

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+      H LRHSFA+HLL + GDLR++Q +LGH  ++TTQ+YT+++ ++    +  +
Sbjct: 233 SGVGRPVHPHMLRHSFASHLLESSGDLRAVQELLGHADIATTQVYTHLDFQH----LARV 288

Query: 314 YDQTHPSITQ 323
           YDQ HP   +
Sbjct: 289 YDQAHPRARK 298


>gi|289664010|ref|ZP_06485591.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 305

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 92/316 (29%), Positives = 152/316 (48%), Gaps = 19/316 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK-----ITIQTIRQLSYT 69
           +     +L  L++ER +S  TL +Y  D    + + A +  E       T     QL   
Sbjct: 1   MSSVDEFLSYLQVERQVSAHTLDAYRRDLAALVAWTAEHNTEDGAQQTATPLDTAQLDSA 60

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R F++    + +  +SL+R LS  +S+  +L K      S    MR  K    LP+ L
Sbjct: 61  HLRQFVAAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIASSPAAAMRAPKSPRKLPQVL 120

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  +A+ LV+            +  R+ A+L L Y  GLR+SE  +L  +++  D   + 
Sbjct: 121 DADEAVRLVEVP------TDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVM 174

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG K R+VP+      A+ E+      D   +    +F G  G  ++    Q  I+Q
Sbjct: 175 VLGKGSKQRLVPVGSHAIAALREWL----RDSGASADTHVFPGRAGGAISQRAVQIRIKQ 230

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           L    G+      H LRHSFA+H+L + GDLR +Q +LGH  ++TTQIYT+++ ++    
Sbjct: 231 LAVRQGMFKDVHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQH---- 286

Query: 310 MMEIYDQTHPSITQKD 325
           + ++YD  HP   +K 
Sbjct: 287 LAKVYDAAHPRAKRKK 302


>gi|269959610|ref|ZP_06173991.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835668|gb|EEZ89746.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 305

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 149/306 (48%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + +ERGLS+ TL SY  D  + L ++  ++        +  +S + ++ + S 
Sbjct: 15  VEQFLDAMWMERGLSENTLASYRNDLMKLLAWMEQHSYR------LDFISLSGLQEYQSY 68

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    S  R LS I+   +Y+ + K+  +     + + K    LP+ ++E+Q   L
Sbjct: 69  LVDLDYKQTSRARMLSAIRRLFQYIHREKVRADDPSALLVSPKLPQRLPKDISEEQVDAL 128

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D            ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG K 
Sbjct: 129 LD-----APDPNDPVELRDKAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGGKE 183

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +    I  +        L       +F   R + +    F   I+      G+
Sbjct: 184 RLVPMGENAVDWIETFIQQGRSALLGETTSDVVFPSKRARQMTRQTFWHRIKYYAVIAGI 243

Query: 257 PLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +I+ 
Sbjct: 244 DTDQLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIHS 299

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 300 QHHPRA 305


>gi|229047517|ref|ZP_04193107.1| Tyrosine recombinase xerC [Bacillus cereus AH676]
 gi|228723764|gb|EEL75119.1| Tyrosine recombinase xerC [Bacillus cereus AH676]
          Length = 299

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 87/309 (28%), Positives = 156/309 (50%), Gaps = 17/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R ++
Sbjct: 5   KLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYL 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +K+  +S+ R +S ++S  ++L +     ++        KK  S+P+ L  ++  
Sbjct: 60  TTLHDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELE 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L +   + T      +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG 
Sbjct: 120 ELFEVSDMETP-----LGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGK 174

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K R +P     + +++ Y +     L          +F   +G PL     +  + +L +
Sbjct: 175 KQRYIPFGSYAQDSLITYIENGRKQLVNKTDEDSHMVFLNAKGTPLTSRGVRYVLNELIK 234

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +     +  
Sbjct: 235 KASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER----LRS 290

Query: 313 IYDQTHPSI 321
           +Y + HP  
Sbjct: 291 VYMKHHPRA 299


>gi|146277269|ref|YP_001167428.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145555510|gb|ABP70123.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 306

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 126/313 (40%), Positives = 180/313 (57%), Gaps = 10/313 (3%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
            +        + WL +  +  G S  T+++Y  D   +L FLA +  E   +  +  + +
Sbjct: 4   AIPPAARDALEAWLTHQRVIEGASPHTIRAYAADVAGWLAFLAGHLGEGYGLPALASVPH 63

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++RA+++  R + +G RSL RSLS ++ F  +L +R+    + +L+ R  K    LPR 
Sbjct: 64  ADLRAWMAHERARGLGARSLARSLSAVRQFTGWLAEREGVDATAVLSARGPKFRRKLPRP 123

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+E  A  L+  + +       WI AR+ A++ LLYGCGLRISEAL L        +  L
Sbjct: 124 LSEGDAKALL--LTVAEDGAEDWIRARDLAVVTLLYGCGLRISEALGLPATAHPLPE-VL 180

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKG K R+VP +P+ R+A+  Y  LCPFDL      PLFRG RG  LNP +  + + 
Sbjct: 181 RILGKGSKERLVPAIPAAREAVARYAALCPFDL---TSGPLFRGARGGALNPRLVAKVME 237

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           + R  LGLP + T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ+YT V+    G 
Sbjct: 238 RARATLGLPPTATPHALRHSFATHLLNAGGDLRAIQELLGHASLSTTQVYTAVD----GA 293

Query: 309 WMMEIYDQTHPSI 321
            +ME+Y + HP  
Sbjct: 294 RLMEVYARAHPRA 306


>gi|255026410|ref|ZP_05298396.1| hypothetical protein LmonocytFSL_08880 [Listeria monocytogenes FSL
           J2-003]
          Length = 290

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 89/293 (30%), Positives = 149/293 (50%), Gaps = 11/293 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L  L +ERGLS  T+++YE D   F+ ++    E    +     L  ++I  F++ 
Sbjct: 5   IEDFLHFLIVERGLSANTIKAYERDLHYFVSYMDVTKE----LTDPNTLERSDIVGFMAF 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R +    RS+ R ++ ++SF  YL      +   ++ +   K++  LP+ LN      L
Sbjct: 61  ARQEGKSPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAKGLPKVLNLDDVEKL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +      +S  +  +  R+ A++ +LY  GLR++E +SL   ++      ++  GKGDK 
Sbjct: 121 L-----SSSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKE 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           RI+PL  +    + +Y +     L         +F    G+ L    F + ++ + +  G
Sbjct: 176 RIIPLGKTATTVLEKYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESG 235

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +    T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT+V      D
Sbjct: 236 IEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKD 288


>gi|152972799|ref|YP_001337945.1| site-specific tyrosine recombinase XerC [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|150957648|gb|ABR79678.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 300

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 86/315 (27%), Positives = 150/315 (47%), Gaps = 17/315 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +    L      +L++L +ER LS +TL +Y+      +        ++  +++  Q   
Sbjct: 1   MTDSPLFSAVARFLRHLGVERQLSPITLLNYQRQLDALIA-----LADEAGLKSWSQCDA 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++R+F  + R   +G  SL   LS ++SF  +L  +   + +    +   K    LP+ 
Sbjct: 56  AQVRSFAVRSRRAGLGPASLALRLSALRSFFDWLVGQGELSANPAKGIAAPKIPRHLPKN 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++      L+D  L         +  R+ A+L ++YG GLR+SE ++L  +++  +   +
Sbjct: 116 IDVDDVNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVNLDIKHLDLESGEV 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +P+  +    I  + DL    L       LF    GK ++    Q+   
Sbjct: 170 WVMGKGSKERRLPIGRNAVAWIEHWLDLRG--LFGTDDDALFLSKLGKRISARNVQKRFA 227

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++   
Sbjct: 228 EWGIRQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 284

Query: 309 WMMEIYDQTHPSITQ 323
            +  +YD  HP   +
Sbjct: 285 -LASVYDAAHPRAKR 298


>gi|32474020|ref|NP_867014.1| integrase/recombinase [Rhodopirellula baltica SH 1]
 gi|32444557|emb|CAD74556.1| integrase/recombinase [Rhodopirellula baltica SH 1]
 gi|327543299|gb|EGF29732.1| integrase/recombinase [Rhodopirellula baltica WH47]
          Length = 300

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 92/310 (29%), Positives = 146/310 (47%), Gaps = 15/310 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +      +LQ +  ER  S LT+++Y  D   F  ++      +I + +   L+  ++R 
Sbjct: 1   MRTAITRFLQYMATERNASDLTIKAYREDLFAFAEWIGQAEAGRIQLDS---LTPQQLRQ 57

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F +  +       ++ R L+ ++SF K+  +  + + +    +RN + S  LP  L  ++
Sbjct: 58  FQAALQQAGYARTTIARKLASLRSFFKFAMREGMASSNPAKPLRNPRSSRKLPHVLTSEE 117

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L     L           R+ AIL  +Y  GLR+SE + L   ++   Q   R++GK
Sbjct: 118 VGRL-----LVAPPAISEAGLRDRAILETMYSSGLRVSELVGLRDGDLDFSQGITRVRGK 172

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           G K RI PL     KAI  Y            L    P+F    G  L      R + + 
Sbjct: 173 GRKERISPLGSYAIKAIQAYAGRRSRSPESEKLGRAAPVFVNRFGNILTTRSVGRMLEKY 232

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                L   T+ HTLRHSFATHLL  G D+RS+Q +LGH  L+TTQIYT+V++ N    +
Sbjct: 233 IAKAELDTRTSPHTLRHSFATHLLDRGADIRSVQELLGHKSLTTTQIYTHVSAAN----L 288

Query: 311 MEIYDQTHPS 320
            ++Y++ HP 
Sbjct: 289 RQVYEKAHPR 298


>gi|325918374|ref|ZP_08180505.1| tyrosine recombinase XerC subunit [Xanthomonas vesicatoria ATCC
           35937]
 gi|325535397|gb|EGD07262.1| tyrosine recombinase XerC subunit [Xanthomonas vesicatoria ATCC
           35937]
          Length = 302

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 90/313 (28%), Positives = 153/313 (48%), Gaps = 16/313 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK--ITIQTIRQLSYTEIR 72
           +   + +L  L++ER +S  TL +Y  D    L + A    +        + QL   ++R
Sbjct: 1   MSSVEAFLAYLQVERQVSAHTLDAYRRDLAALLSWAAEQKNDAGVAVALDVAQLDSAQLR 60

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F++    + +  +SL+R LS  +S+  +L K    T S    +R  K    LP+ L+  
Sbjct: 61  QFVAAEHRRGLSAKSLQRRLSACRSYYAWLLKHGRITASPAAALRAPKAPRKLPQVLDAD 120

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +A+ LV+            +  R+ A+L L Y  GLR+SE  +L  +++      + + G
Sbjct: 121 EAVRLVEVP------TDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLASGLVMVLG 174

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R+VP+      A+ E+      D     +  +F G  G  ++    Q  I+QL  
Sbjct: 175 KGGKQRLVPVGSHAIAALREW----QRDSGGRAETHVFPGRAGGAISQRAVQIRIKQLAV 230

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+      H LRHSFA+H+L + GDLR +Q +LGH  ++TTQIYT+++ ++    + +
Sbjct: 231 RQGMFKDVHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQH----LAK 286

Query: 313 IYDQTHPSITQKD 325
           +YD  HP   +K 
Sbjct: 287 VYDAAHPRARRKK 299


>gi|228954107|ref|ZP_04116136.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|229071329|ref|ZP_04204552.1| Tyrosine recombinase xerC [Bacillus cereus F65185]
 gi|229081086|ref|ZP_04213596.1| Tyrosine recombinase xerC [Bacillus cereus Rock4-2]
 gi|229192000|ref|ZP_04318970.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 10876]
 gi|228591551|gb|EEK49400.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 10876]
 gi|228702130|gb|EEL54606.1| Tyrosine recombinase xerC [Bacillus cereus Rock4-2]
 gi|228711783|gb|EEL63735.1| Tyrosine recombinase xerC [Bacillus cereus F65185]
 gi|228805673|gb|EEM52263.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 299

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 156/309 (50%), Gaps = 17/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R ++
Sbjct: 5   KLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYL 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +K+  +S+ R +S ++S  ++L +     ++        KK  S+P+ L  ++  
Sbjct: 60  TTLHDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELE 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L +      S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG 
Sbjct: 120 ELFE-----VSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGK 174

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K R +P     + +++ Y +     L          +F   +GKPL     +  + +L +
Sbjct: 175 KQRYIPFGSYAQDSLITYIENGRKQLVNKTDEDSHMVFLNAKGKPLTSRGVRYVLNELIK 234

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +     +  
Sbjct: 235 KASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER----LRS 290

Query: 313 IYDQTHPSI 321
           +Y + HP  
Sbjct: 291 VYMKHHPRA 299


>gi|15615028|ref|NP_243331.1| integrase/recombinase [Bacillus halodurans C-125]
 gi|34223073|sp|Q9KA25|XERC_BACHD RecName: Full=Tyrosine recombinase xerC
 gi|10175085|dbj|BAB06184.1| integrase/recombinase [Bacillus halodurans C-125]
          Length = 303

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 97/307 (31%), Positives = 152/307 (49%), Gaps = 19/307 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L++E+  S  T+ +YE D R F  F+     E+ +I +   +SY  +R +++   
Sbjct: 11  AFLLYLKMEKNHSPHTIVNYELDLRHFRDFM-----EQQSIPSFAAVSYAFVRHYLTVLY 65

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q+    ++ R LS ++SF ++L + K   E+  L     K    LP  L E++   L+D
Sbjct: 66  EQEYARSTVSRKLSTLRSFYQFLVREKWVMENPFLLAHTPKGVKKLPSFLYEEEMEQLLD 125

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                  +    +  RN A+   +Y  GLR+SE   L  Q++     T+ + GKG K R 
Sbjct: 126 -----ALNGDSPLQLRNRALFETIYASGLRVSECCGLKLQDVDLSIGTVFVFGKGRKERY 180

Query: 200 VPLLPSVRKAILEYYDLCPFDL-----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           VP+      AI EY +     L     ++++   LF   RG PL     ++ + Q     
Sbjct: 181 VPIGSFACDAIQEYIENGREKLLKKSKSVDLPGDLFLNYRGGPLTERGVRKILHQALDQA 240

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            L    + H+LRHSFATHLL+NG DLR +Q +LGH  LSTTQ+YT+V      D + ++Y
Sbjct: 241 ALSTRVSPHSLRHSFATHLLNNGADLRVVQDLLGHENLSTTQVYTHVT----KDRLRDVY 296

Query: 315 DQTHPSI 321
              HP  
Sbjct: 297 RTHHPRA 303


>gi|308274298|emb|CBX30897.1| Tyrosine recombinase xerD [uncultured Desulfobacterium sp.]
          Length = 298

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 104/304 (34%), Positives = 153/304 (50%), Gaps = 15/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GLSK TL+SY  D   ++ FL      K  I+ I +     I   I  
Sbjct: 8   VDQYLNYLVVEKGLSKKTLESYGSDIATYIDFLG-----KKGIKDISEADTPTILMHIIA 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R   +  RS  R L  ++ F K+L + K+ T      +   K    LP  L + +  +L
Sbjct: 63  LREDGLKARSRARHLVTLRGFYKFLVREKLITTDPTRVIDLPKSGFYLPNVLTQDEVKSL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +          +K    R+SA++ LLY  GLR+SE + L   ++  D   +R+ GKG K 
Sbjct: 123 L-----SVPDVSKPAGLRDSAMIELLYAAGLRVSELVGLKLFDVNMDACFVRVFGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVP+    ++ + EY +   P  L  N+   LF G  GKPL    F + I++      +
Sbjct: 178 RIVPIGTFAKEKVSEYINTARPLILKNNMSNFLFVGRGGKPLTRQGFWKIIKRYSTLGKI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + T H+LRHSFATHLL  G DLRS+Q +LGH  +STTQIYT+V      D + +I+ +
Sbjct: 238 TKTITPHSLRHSFATHLLEGGADLRSVQLMLGHVDISTTQIYTHV----VRDHLKKIHSK 293

Query: 317 THPS 320
            HP 
Sbjct: 294 YHPR 297


>gi|311693653|gb|ADP96526.1| site-specific tyrosine recombinase XerD [marine bacterium HP15]
          Length = 300

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 94/302 (31%), Positives = 149/302 (49%), Gaps = 14/302 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            ++  + +E GL + T Q+Y  D  +   +L     + +    +R +  T++ A++S   
Sbjct: 11  RFVDAIWLEDGLGEKTRQAYRSDLLRLSEWLESQPGKPL----LRDVRRTDLLAWMSSGL 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q +   +  R LSG++ F ++L +  + TE   L + + +    LP +L E +   L+ 
Sbjct: 67  AQGVKSSTAARRLSGLRRFYRFLLREGLITEDPTLRIDSPRLPRRLPDSLTEGEVDALLS 126

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                       I+ R+ A+L +LYGCGLR+SE   L    +   Q  +RI GKGDK R+
Sbjct: 127 E-----PDPGIAIELRDKAMLEILYGCGLRVSELTELRVDQVNLRQGVVRITGKGDKERL 181

Query: 200 VPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VPL       +L+Y     P  L       LF G R   +    F   I+     +G+  
Sbjct: 182 VPLGEEAVDWLLQYMKEGRPELLKGRSCDALFPGNRAAAMTRQTFWHRIKHYAVRVGIRK 241

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++   H
Sbjct: 242 HLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARQR----LQSLHQAHH 297

Query: 319 PS 320
           P 
Sbjct: 298 PR 299


>gi|161505543|ref|YP_001572655.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866890|gb|ABX23513.1| hypothetical protein SARI_03708 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 300

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 87/315 (27%), Positives = 150/315 (47%), Gaps = 17/315 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +    L ++   +L+ L +ER LS +TL +Y+      +         +  +++ +Q   
Sbjct: 1   MTDVALSQDVSRFLRYLGVERQLSPITLLNYQRQLDAIIALAG-----EAGLKSWQQCDA 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ 
Sbjct: 56  VMVRGFAVRSRRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKN 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++      L+D  L         +  R+ A+L ++YG GLR+SE + L  +++  D   +
Sbjct: 116 IDVDDVNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEV 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +P+  +    I  + DL    L  + +  LF    GK ++    Q+   
Sbjct: 170 WVMGKGSKERRLPIGRNAVTWIEHWLDLRG--LFASDEEALFLSKLGKRISARNVQKRFA 227

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++   
Sbjct: 228 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 284

Query: 309 WMMEIYDQTHPSITQ 323
            +  +YD  HP   +
Sbjct: 285 -LASVYDAAHPRAKR 298


>gi|208779461|ref|ZP_03246806.1| tyrosine recombinase XerD [Francisella novicida FTG]
 gi|208744422|gb|EDZ90721.1| tyrosine recombinase XerD [Francisella novicida FTG]
          Length = 292

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 146/308 (47%), Gaps = 18/308 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +      +L NL +E GLS+ T+ SY  D +    + A           +  L + ++ A
Sbjct: 1   MSSAVDAFLDNLWLEHGLSQNTISSYRTDLKFLQNYFAK--------TDLISLDFEQLYA 52

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           FIS R       RS  R +S ++ F  +L     T  +    +   K +  LP+ + E  
Sbjct: 53  FISYRSKNGYSSRSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETD 112

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+          T+ +  R+ A+L L+Y  GLR+SE + L   +I  +   +++ GK
Sbjct: 113 VERLL-----QAPDMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMGK 167

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K RIVP+     + + +Y+      L+ N  +  +F     K +    F   I+    
Sbjct: 168 GSKERIVPIGEYALEYLQKYFAEARMSLSKNFKEKAVFISKHAKRITRQSFWHRIKNYAL 227

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    + HTLRH+FATHLL++G DLRS+Q +LGH  +STT IYT+++       + E
Sbjct: 228 IAGINTDISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR----LQE 283

Query: 313 IYDQTHPS 320
           IY + HP 
Sbjct: 284 IYQKHHPR 291


>gi|238855202|ref|ZP_04645521.1| tyrosine recombinase XerD [Lactobacillus jensenii 269-3]
 gi|260664565|ref|ZP_05865417.1| tyrosine recombinase XerD [Lactobacillus jensenii SJ-7A-US]
 gi|282932504|ref|ZP_06337929.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1]
 gi|313471969|ref|ZP_07812461.1| tyrosine recombinase XerD [Lactobacillus jensenii 1153]
 gi|238832094|gb|EEQ24412.1| tyrosine recombinase XerD [Lactobacillus jensenii 269-3]
 gi|260561630|gb|EEX27602.1| tyrosine recombinase XerD [Lactobacillus jensenii SJ-7A-US]
 gi|281303453|gb|EFA95630.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1]
 gi|313449040|gb|EFR61308.1| tyrosine recombinase XerD [Lactobacillus jensenii 1153]
          Length = 300

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 100/324 (30%), Positives = 162/324 (50%), Gaps = 27/324 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+ NNL          +  ++L+   +ERGLSK T+ SY+ D  QF+ +L     +K  I
Sbjct: 1   MKKNNL---------DQVADFLRFCSLERGLSKNTVNSYQLDLNQFVEYL-----DKEKI 46

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
               +     I ++++K+R +     ++ R ++ ++ F +YL ++ I     ++ +   K
Sbjct: 47  SDWPE-DPLVIDSYLAKQRDEGKKTSTISRGITTLRRFYRYLLRQHILVVDPLIQIDTPK 105

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +   LP AL++K+      + LL   +       R+ AIL LLY  G+R+SE ++L   +
Sbjct: 106 QEKRLPLALSQKEV-----SELLAQPNLNTATGLRDRAILELLYATGMRVSELINLKETD 160

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN---IQLPLFRGIRGKP 237
           +  D   +R+ GKG K R+VP+       + +Y         L        LF   R   
Sbjct: 161 LHTDLKIIRVLGKGSKERLVPVTDFALNWVDKYLKEVRDPALLKKGVACDFLFLNNRAGQ 220

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L      + I++  +   +    T HTLRH+FATHLL NG DLR +Q ILGH  +STTQI
Sbjct: 221 LTRQAVWQSIKKYSKLARIDKDITPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQI 280

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSI 321
           YTN++ K+  D    +Y +THP  
Sbjct: 281 YTNLSQKHIFD----VYLKTHPRA 300


>gi|308174137|ref|YP_003920842.1| site-specific tyrosine recombinase [Bacillus amyloliquefaciens DSM
           7]
 gi|307607001|emb|CBI43372.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus amyloliquefaciens DSM 7]
 gi|328554079|gb|AEB24571.1| site-specific tyrosine recombinase XerD [Bacillus amyloliquefaciens
           TA208]
 gi|328912472|gb|AEB64068.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus amyloliquefaciens LL3]
          Length = 296

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 93/309 (30%), Positives = 159/309 (51%), Gaps = 14/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + ++++  + +ERGLS+ T+ SYE D + + +FL     E + I +   ++   I  
Sbjct: 1   MKDQIKDFIHYVRVERGLSQNTMMSYERDLKSYSLFLT----ETLQITSWNDVTRLHIIQ 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++   +      ++  R L+ I+SF ++L + K   +   +++   K   +LP+ L  ++
Sbjct: 57  YLKHLKDSGKSGKTSARHLASIRSFHQFLLREKAADKDPSVHIETQKTERALPKVLALQE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D   L +         R+ A+L LLY  G+R+SE + L   ++      +R  GK
Sbjct: 117 VERLLDTPKLDSP-----FGLRDKAMLELLYATGIRVSEMIELKLSDVHLTMGFVRCFGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K RIVP+  +   AI  Y        L  N+   LF    G+ ++   F + ++++  
Sbjct: 172 GRKERIVPIGEAASHAIEAYIEKARGKLLKKNVTEALFLNHHGRQISRQGFWKNLKKIAL 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V+       + +
Sbjct: 232 EAGIKKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKD 287

Query: 313 IYDQTHPSI 321
           +Y Q HP  
Sbjct: 288 VYKQYHPRA 296


>gi|62182418|ref|YP_218835.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62130051|gb|AAX67754.1| putative integrase/recombinase, site-specific [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322716911|gb|EFZ08482.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 300

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 87/315 (27%), Positives = 151/315 (47%), Gaps = 17/315 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +    L ++   +L+ L +ER LS +TL +Y+      +         +  +++ +Q   
Sbjct: 1   MTDVALSQDVSRFLRYLGVERQLSPITLLNYQRQLDAIIALAG-----EAGLKSWQQCDA 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R+F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ 
Sbjct: 56  AIVRSFAVRSRRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKN 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++      L+D  L         +  R+ A+L ++YG GLR+SE + L  +++  D   +
Sbjct: 116 IDVDDVNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEV 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +P+  +    I  + DL    L  + +  LF    GK ++    Q+   
Sbjct: 170 WVMGKGSKERRLPIGRNAVTWIEHWLDLRG--LFASDEEALFLSKLGKRISARNVQKRFA 227

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++   
Sbjct: 228 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 284

Query: 309 WMMEIYDQTHPSITQ 323
            +  +YD  HP   +
Sbjct: 285 -LASVYDAAHPRAKR 298


>gi|237727927|ref|ZP_04558408.1| site-specific tyrosine recombinase XerC [Citrobacter sp. 30_2]
 gi|226910376|gb|EEH96294.1| site-specific tyrosine recombinase XerC [Citrobacter sp. 30_2]
          Length = 300

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 88/315 (27%), Positives = 151/315 (47%), Gaps = 17/315 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +    L ++   +L+ L +ER LS +TL +Y+      +         +  +Q+ +Q   
Sbjct: 1   MTDSPLSQDVVRFLRYLGVERQLSPITLLNYQRQLDAIIALAG-----ETGLQSWQQCDA 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R+F  + R + +G  SL   LS ++SF  +L  +     +   ++   K    LP+ 
Sbjct: 56  AMVRSFAVRSRRKGLGPASLALRLSALRSFFDWLVNQGELKANPAKSVSAPKAPRHLPKN 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++      L+D  L         +  R+ A+L ++YG GLR+SE + L  +++  D   +
Sbjct: 116 IDVDDVNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEV 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +P+  +    I  + DL    L  +    LF    GK ++    Q+   
Sbjct: 170 WVMGKGSKERRLPIGRNAVAWIEHWLDLRG--LFGSDDDALFLSKLGKRISARNVQKRFA 227

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++   
Sbjct: 228 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 284

Query: 309 WMMEIYDQTHPSITQ 323
            +  +YD  HP   +
Sbjct: 285 -LASVYDAAHPRAKR 298


>gi|332184671|gb|AEE26925.1| Tyrosine recombinase xerD [Francisella cf. novicida 3523]
          Length = 292

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 91/308 (29%), Positives = 147/308 (47%), Gaps = 18/308 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +      +L NL +E GLS+ T+ SY  D +    + A           +  L + ++ A
Sbjct: 1   MSSAVDAFLDNLWLEHGLSQNTISSYRTDLKLLENYFAK--------TDLISLDFEQLYA 52

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           FIS R       RS  R +S ++ F  +L     T  +    +   K +  LP+ + E  
Sbjct: 53  FISYRSKNGYSSRSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETD 112

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+     H    T+ +  R+ A+L L+Y  GLR+SE + L   +I  +   +++ GK
Sbjct: 113 VERLL-----HAPDMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMGK 167

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K RIVP+     + + +Y+      L+ N  +  +F     K +    F   I+    
Sbjct: 168 GSKERIVPIGEYALEYLQKYFAEARMSLSKNFKEKAVFISKHTKRITRQSFWHRIKNYAL 227

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    + HTLRH+FATHLL++G DLRS+Q +LGH  +STT IYT+++       + E
Sbjct: 228 IAGINTDISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR----LQE 283

Query: 313 IYDQTHPS 320
           IY + HP 
Sbjct: 284 IYQKHHPR 291


>gi|238752994|ref|ZP_04614453.1| Tyrosine recombinase xerD [Yersinia rohdei ATCC 43380]
 gi|238708782|gb|EEQ01041.1| Tyrosine recombinase xerD [Yersinia rohdei ATCC 43380]
          Length = 299

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 151/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L +ER L++ TL SY  D      +L            + +    ++++F+++
Sbjct: 9   IEQFLDALWLERNLAENTLASYRLDLHALTGWLEHNG------SDLLRAGSQDLQSFLAE 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q   L
Sbjct: 63  RIEGGYKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +     ++ +    ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K 
Sbjct: 123 L-----NSPNVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKE 177

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       I  Y     P+ +N +    LF   R + +    F   I+      G+
Sbjct: 178 RLVPLGEEAVYWIENYMEHGRPWLINGHSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGI 237

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 238 DSERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQ 293

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 294 QHHPRA 299


>gi|27468099|ref|NP_764736.1| site-specific recombinase [Staphylococcus epidermidis ATCC 12228]
 gi|251810914|ref|ZP_04825387.1| integrase/recombinase XerD [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876077|ref|ZP_06284944.1| tyrosine recombinase XerD [Staphylococcus epidermidis SK135]
 gi|34222791|sp|Q7ZAJ2|XERD_STAES RecName: Full=Tyrosine recombinase xerD
 gi|27315645|gb|AAO04780.1|AE016748_14 site-specific recombinase [Staphylococcus epidermidis ATCC 12228]
 gi|251805594|gb|EES58251.1| integrase/recombinase XerD [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295102|gb|EFA87629.1| tyrosine recombinase XerD [Staphylococcus epidermidis SK135]
 gi|329737213|gb|EGG73467.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU028]
          Length = 295

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 152/305 (49%), Gaps = 15/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  ++IE+GLS  T+ +Y  D +++  +L     E   I  I  +    I+  +  
Sbjct: 5   IEEYLNFIQIEKGLSNNTIGAYRRDLKKYKDYL-----EDNKISHIDFIDRQIIQECLGH 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                   +SL R +S I+SF ++  + K   +   + +   K    LP  L   + + L
Sbjct: 60  LIDMGQSSKSLARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEIDEVIAL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++     T   TK    R+  +L LLY  G+R++E + L  +++      +R+ GKG+K 
Sbjct: 120 LE-----TPDLTKNNGYRDRTMLELLYATGMRVTEIIQLDVEDVNLIMGFVRVFGKGNKE 174

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVPL  +V + +  Y   + P  L       LF  + GK L+     + I+Q      +
Sbjct: 175 RIVPLGDTVIEYLTTYIETVRPQLLKQTTTQALFLNMHGKSLSRQGIWKIIKQYGLKANI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y Q
Sbjct: 235 NKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYTQ 290

Query: 317 THPSI 321
            HP  
Sbjct: 291 FHPRA 295


>gi|291612618|ref|YP_003522775.1| tyrosine recombinase XerC [Sideroxydans lithotrophicus ES-1]
 gi|291582730|gb|ADE10388.1| tyrosine recombinase XerC [Sideroxydans lithotrophicus ES-1]
          Length = 299

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 99/316 (31%), Positives = 160/316 (50%), Gaps = 19/316 (6%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
             + ++    Q +L  L  ER  S LT ++Y  D R+          E      +  L  
Sbjct: 2   PAAEQVPATLQGYLAYLNNERNYSPLTAENYARDIRRLF--------ELAGATPLPDLKS 53

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             IR +I++     +G RSL R LS  + F  YL +      +  + +R  K   +LP A
Sbjct: 54  HHIRRYIAQLHGSGLGGRSLARVLSAWRGFYGYLMRDHGCKSNPCVGLRAPKAPKTLPHA 113

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+  +A+ LV+ ++         +DAR+ A+  LLY  GLR++E +SL P ++    +++
Sbjct: 114 LSPDEAVKLVEMLVA------TPLDARDKAMFELLYSSGLRLAELVSLDPIDMDFADASV 167

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R+ GKG+K RIVPL      A+  +  +    +    +  LF G  G  ++P   Q  +R
Sbjct: 168 RVTGKGNKTRIVPLGSHAIDALKAWLAVRD-QIAKPGETALFVGKNGARISPRTVQLQLR 226

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           Q     G+      H LRHSFATH+L + GDLR++Q +LGH  +STTQ+YT+++ +    
Sbjct: 227 QRGITQGIASGVHPHLLRHSFATHVLQSSGDLRAVQEMLGHASISTTQVYTHLDFQ---- 282

Query: 309 WMMEIYDQTHPSITQK 324
           ++ +IYD  HP   +K
Sbjct: 283 YLAKIYDGAHPRAKKK 298


>gi|261211515|ref|ZP_05925803.1| site-specific recombinase XerD [Vibrio sp. RC341]
 gi|260839470|gb|EEX66096.1| site-specific recombinase XerD [Vibrio sp. RC341]
          Length = 302

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 153/306 (50%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + +ERGL++ T+ SY  D  + L ++  +         +  +S++ ++ + S 
Sbjct: 12  VEQFLDTMWLERGLAENTVASYRNDLSKLLEWMEQHHYR------LDFISFSGLQEYQSW 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q     S  R LS I+   +YL + K+  +     + + K    LP+ L+E Q   L
Sbjct: 66  LSEQNYKPSSKARMLSAIRRLFQYLHREKVRADDPSALLISPKLPIRLPKDLSEAQVDAL 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +     +       I+ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG K 
Sbjct: 126 L-----NAPDPQTPIELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVIGKGGKE 180

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +  + I  +        L       +F   RG+ +    F   I+      G+
Sbjct: 181 RLVPMGENAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGI 240

Query: 257 PL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            +   + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + ++++
Sbjct: 241 DVEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHN 296

Query: 316 QTHPSI 321
           + HP  
Sbjct: 297 EHHPRA 302


>gi|118498126|ref|YP_899176.1| site-specific recombinase [Francisella tularensis subsp. novicida
           U112]
 gi|194323353|ref|ZP_03057137.1| tyrosine recombinase XerD [Francisella tularensis subsp. novicida
           FTE]
 gi|254373477|ref|ZP_04988965.1| site specific recombinase XerD [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|118424032|gb|ABK90422.1| site-specific recombinase [Francisella novicida U112]
 gi|151571203|gb|EDN36857.1| site specific recombinase XerD [Francisella novicida GA99-3549]
 gi|194322717|gb|EDX20197.1| tyrosine recombinase XerD [Francisella tularensis subsp. novicida
           FTE]
          Length = 292

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 91/308 (29%), Positives = 146/308 (47%), Gaps = 18/308 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +      +L NL +E GLS+ T+ SY  D +    + A           +  L + ++ A
Sbjct: 1   MSSAVDAFLDNLWLEHGLSQNTISSYRTDLKFLQNYFAK--------TDLISLDFEQLYA 52

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           FIS R       RS  R +S ++ F  +L     T  +    +   K +  LP+ + E  
Sbjct: 53  FISYRSKNGYSSRSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETD 112

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L     L     T+ +  R+ A+L L+Y  GLR+SE + L   +I  +   +++ GK
Sbjct: 113 VERL-----LQAPDMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMGK 167

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K RIVP+     + + +Y+      L+ N  +  +F     K +    F   I+    
Sbjct: 168 GSKERIVPIGEYALEYLQKYFAEARTSLSKNFKEKAVFISKHAKRITRQSFWHRIKNYAL 227

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    + HTLRH+FATHLL++G DLRS+Q +LGH  +STT IYT+++       + E
Sbjct: 228 IAGINTDISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR----LQE 283

Query: 313 IYDQTHPS 320
           IY + HP 
Sbjct: 284 IYQKHHPR 291


>gi|254513968|ref|ZP_05126029.1| tyrosine recombinase XerD [gamma proteobacterium NOR5-3]
 gi|219676211|gb|EED32576.1| tyrosine recombinase XerD [gamma proteobacterium NOR5-3]
          Length = 302

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 150/304 (49%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + +E+GLS+ TL +Y  D + F  + +         ++  +++ T+I A+++ 
Sbjct: 13  LETYLDAVWMEKGLSENTLAAYRRDLQSFARWASTRN------RSTTKVARTDIEAYLAY 66

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
               K   RS  R+LS ++ + ++L +     E   L + + +    LP+ L+E     L
Sbjct: 67  LLAHKRSPRSAARALSCLRGYYRHLLRSGQLKEDPTLGLDSPRLGRPLPKTLSEADVDAL 126

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +        +  + I  R+  +L LLY CGLR+SE   LT   +  +Q  +RI GKG K 
Sbjct: 127 L-----QAPNLEELIGFRDRCMLELLYACGLRVSELTGLTVSQLSLNQGVVRISGKGGKE 181

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y   + P  L       LF   R + +    F   I+Q     G+
Sbjct: 182 RLVPVGEEALHWLQRYLREIRPQLLGETSSEVLFPSRRAQMMTRQTFWHRIKQHAITAGI 241

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++ +
Sbjct: 242 HKPISPHVLRHAFATHLVNHGADLRVVQLLLGHSDLSTTQIYTHVARQR----LQSLHAK 297

Query: 317 THPS 320
            HP 
Sbjct: 298 HHPR 301


>gi|329571728|gb|EGG53409.1| tyrosine recombinase XerD [Enterococcus faecalis TX1467]
          Length = 305

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 94/311 (30%), Positives = 166/311 (53%), Gaps = 16/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++  ++L  L+IERGLS  T +SYE D ++++ FL     ++  + +  ++    I  
Sbjct: 1   MEEQLVDYLHYLQIERGLSNNTRRSYERDLKKYVAFL-----QEQGLHSWDEVDRYMITE 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+     ++    S+ R +S ++ F ++L++ +++  + + ++ + KK   LP  L+  +
Sbjct: 56  FLQSLHEEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++     T   +K +  RN AIL ++Y  GLR+SE + +   ++      L+  GK
Sbjct: 116 VTRLIE-----TPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GDK RI+PL     + I  Y +     L  N   +  LF    G+PL+     + ++Q+ 
Sbjct: 171 GDKERIIPLGDYAIQWIERYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIV 230

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R   +  + T HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT++  +     M 
Sbjct: 231 REAQIEKNITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQR----MA 286

Query: 312 EIYDQTHPSIT 322
           ++Y +  P  +
Sbjct: 287 DVYKEHFPRAS 297


>gi|89091996|ref|ZP_01164951.1| tyrosine recombinase XerD [Oceanospirillum sp. MED92]
 gi|89083731|gb|EAR62948.1| tyrosine recombinase XerD [Oceanospirillum sp. MED92]
          Length = 306

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 95/319 (29%), Positives = 163/319 (51%), Gaps = 16/319 (5%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
             +L   ++ E  +    +L  + +E+GLS  TL SY  D  QF ++L            
Sbjct: 2   AKHLKPKINTEDAQLIDIYLDAIWMEKGLSDNTLSSYRRDLVQFSVWLTDQG------VI 55

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +++    +I+ +++ R  ++    S  R LS ++ F +YL + ++ +E  +L + + KK 
Sbjct: 56  MKRCCRVDIQKYLAWRVKERRKASSTSRMLSCLRGFYRYLLREEMISEDPLLLIDSPKKG 115

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             LP+ L E +   L+D         +  +  R+ A+L +LY  GLR+SE ++L    I 
Sbjct: 116 RPLPKTLTESEVELLLD-----APDLSDPVQYRDRAMLEVLYATGLRVSELVALRLHEIN 170

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPG 241
            +Q  LR+ GKG K R+VPL       ++ Y  ++ P     ++   LF   RG+ +   
Sbjct: 171 LNQGVLRVMGKGGKERLVPLGEEAIHWVMRYMGEVRPALFTHDVSDVLFPSRRGQQMTRQ 230

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            F   I++     G+  + + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V
Sbjct: 231 TFWHRIKRHALTAGIDKTLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHV 290

Query: 302 NSKNGGDWMMEIYDQTHPS 320
             +     +  ++ + HP 
Sbjct: 291 AQQR----LQSLHQEHHPR 305


>gi|218289606|ref|ZP_03493826.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius LAA1]
 gi|218240256|gb|EED07439.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius LAA1]
          Length = 294

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 148/309 (47%), Gaps = 16/309 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  E + +L +L +ERGLS+ T  SY  D   F  +LA         +T+R    T +  
Sbjct: 1   MDPEIRTFLDHLRLERGLSENTATSYARDLADFSQYLACEQ------RTMRDADRTVVLR 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++S  + + +   ++ R +S ++SF +YL +  I       N+        LPR ++E+ 
Sbjct: 55  YLSDLKRRGMKSTTIARRMSALRSFFRYLLREGILQADPTANIEVAAPDEHLPRVVSEED 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+             +  R+ A+L  LY  G+R+SE L+L+ +++      +R+ GK
Sbjct: 115 VERLI-----GAVRRPDAMGLRDRAMLETLYATGVRVSELLALSLEDVELAAGFIRVFGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K R+VPL    + A+  Y     P  +    +  +F    G+ +    F   ++   R
Sbjct: 170 GKKERVVPLGEIAQDALGLYLRYGRPLLVRDRGESAVFLNRLGRRMTRQGFWNILKGYAR 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    T HTLRHSFATHLL  G DLR +Q +LGH  +STT+ YT+V        + E
Sbjct: 230 QAGVSAEVTPHTLRHSFATHLLEGGADLRVVQELLGHADISTTERYTHVTP----HRLRE 285

Query: 313 IYDQTHPSI 321
           +Y   HP  
Sbjct: 286 VYRNAHPRA 294


>gi|327440847|dbj|BAK17212.1| site-specific recombinase XerD [Solibacillus silvestris StLB046]
          Length = 300

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 96/311 (30%), Positives = 156/311 (50%), Gaps = 15/311 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
            L    +++L  +++ER LS  TLQSY+ D   +   + +  +    I     +    I 
Sbjct: 3   ALKDSIEDYLHFIKVERQLSDNTLQSYKRDLVAYARHIHYEQQ----IMEFDNVMREHIL 58

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            ++   R+     +++ R +S I+SF ++L + K+T +   +++   KK  SLP+ L+ +
Sbjct: 59  LYLDSLRSVGKSSKTISRQISSIRSFHQFLLREKVTNQDPTVHLEMPKKELSLPKVLSIE 118

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L     L      K    R+ AIL ++YG G+RISE + L  +++      +R+ G
Sbjct: 119 EIDAL-----LTAPSVEKPQGTRDIAILEMMYGSGMRISELIDLNLEDVHLTMGFVRVFG 173

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQL 250
           KG K RI+PL  S  +A + Y +     L  +       F   RGK        + I++ 
Sbjct: 174 KGGKERIIPLGRSAIQACINYLEQARPQLLGDALKNDAFFITQRGKRFTRQGCWKIIKEH 233

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+    T H LRHSFATHL+ NG DLR++Q +LGH  +STTQIYT+V+       +
Sbjct: 234 AATAGISKEITPHVLRHSFATHLIENGADLRAVQELLGHADISTTQIYTHVSKTR----L 289

Query: 311 MEIYDQTHPSI 321
            E+Y Q HP  
Sbjct: 290 SEVYKQFHPRA 300


>gi|161617068|ref|YP_001591033.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168238402|ref|ZP_02663460.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168244638|ref|ZP_02669570.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168263161|ref|ZP_02685134.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|194447983|ref|YP_002047961.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194736121|ref|YP_002116878.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|161366432|gb|ABX70200.1| hypothetical protein SPAB_04901 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194406287|gb|ACF66506.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194711623|gb|ACF90844.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197288766|gb|EDY28141.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|205336497|gb|EDZ23261.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205348233|gb|EDZ34864.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 300

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 88/315 (27%), Positives = 151/315 (47%), Gaps = 17/315 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +    L  +   +L+ L +ER LS +TLQ+Y+      +         +  +++ +Q   
Sbjct: 1   MTDVALSLDVSRFLRYLGVERQLSPITLQNYQRQLDAIIALAG-----ETGLKSWQQCDA 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R+F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ 
Sbjct: 56  AIVRSFAVRSRRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKN 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++      L+D  L         +  R+ A+L ++YG GLR+SE + L  +++  D   +
Sbjct: 116 IDVDDVNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEV 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +P+  +    I  + DL    L  + +  LF    GK ++    Q+   
Sbjct: 170 WVMGKGSKERRLPIGRNAVTWIEHWLDLRG--LFASDEEALFLSKLGKRISARNVQKRFA 227

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++   
Sbjct: 228 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 284

Query: 309 WMMEIYDQTHPSITQ 323
            +  +YD  HP   +
Sbjct: 285 -LASVYDAAHPRAKR 298


>gi|330997435|ref|ZP_08321286.1| tyrosine recombinase XerD [Paraprevotella xylaniphila YIT 11841]
 gi|329570809|gb|EGG52525.1| tyrosine recombinase XerD [Paraprevotella xylaniphila YIT 11841]
          Length = 317

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 92/310 (29%), Positives = 153/310 (49%), Gaps = 17/310 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + Q L++ERGLS+ TL +Y  D R+ L F +            R +S  ++  F+++
Sbjct: 20  LRRYYQYLKLERGLSENTLDAYTEDLRKLLDFFSDEE------LDFRAVSLDDLHQFMAE 73

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I  RS+ R LSGI+SF ++L   K   +     + + K    LP  L   +   +
Sbjct: 74  LADVGISPRSMARILSGIRSFYRFLYVEKEIEQDPTELLESPKIGRRLPEVLTVAEIDAM 133

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++ + L           RN AIL +LY CGLR+SE   L   ++  ++  +R++GKG+K 
Sbjct: 134 IEGIDLSQPE-----GQRNRAILEMLYSCGLRVSELCGLRISDLFLEEGFIRVKGKGEKE 188

Query: 198 RIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLG 255
           R+VP+       +  +        +    +  +F    RG  L+      ++++L    G
Sbjct: 189 RLVPISGRAVHELENWFLCRNLIRIKPGHEDFVFLSLRRGTALSRITIFYWVKELAVAAG 248

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + + HT RHSFATHLL  G +LR IQ++LGH  +STT+IYT+++       +ME   
Sbjct: 249 IQKTISPHTFRHSFATHLLEGGANLRVIQAMLGHESISTTEIYTHIDRSRLRREIME--- 305

Query: 316 QTHPSITQKD 325
             HP   + D
Sbjct: 306 -HHPRNIRDD 314


>gi|317493832|ref|ZP_07952249.1| tyrosine recombinase XerD [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918159|gb|EFV39501.1| tyrosine recombinase XerD [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 299

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 96/306 (31%), Positives = 154/306 (50%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L +ER L++ TL SY  D R    +LA +  + +    + Q+S  +++ F+++
Sbjct: 9   IEQFLDALWLERNLAENTLASYRLDLRSLAEWLAHHHSDLL----LAQVS--DLQDFLAE 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++   +Y  + K+ ++     + + K    LP+ L E Q  TL
Sbjct: 63  RVDGGYKATSSARLLSAMRRLFQYFYREKMRSDDPTTLLSSPKLPQRLPKDLTEAQVDTL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +      T      I+ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K 
Sbjct: 123 L-----QTPCIENPIELRDKAMLEVLYATGLRVSELVGLTLADVSLRQGVVRVIGKGNKE 177

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       I  Y     P+ LN      LF   R + +    F   I+      G+
Sbjct: 178 RLVPLGEEAVYWIEYYLEYGRPWLLNGQTIDVLFPSNRTQQMTRQTFWHRIKHYAVLAGI 237

Query: 257 PL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 238 DSSRLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQ 293

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 294 QHHPRA 299


>gi|296133056|ref|YP_003640303.1| tyrosine recombinase XerC [Thermincola sp. JR]
 gi|296031634|gb|ADG82402.1| tyrosine recombinase XerC [Thermincola potens JR]
          Length = 302

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 155/307 (50%), Gaps = 12/307 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             +++  L++E+  S+ TLQSY+ D  Q + F++             ++ +  IR F+++
Sbjct: 5   VDDFMVYLQVEKNASEKTLQSYQTDLFQMVDFISAEINITPENLQPDRVDHLVIRKFLAE 64

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            + + +   ++ R L+ +++F ++L + ++ T + ++ +   K    LP+ L +     L
Sbjct: 65  LQRRGLSRSTIARKLAAMRTFFRFLCREEVITRNPLIEVATPKVEKRLPQFLYQDDIRNL 124

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++               R+ AIL  LY  G+R+SE ++L   +I  +   +R+ GKG K 
Sbjct: 125 IE-----APERNTPRGLRDRAILETLYASGIRVSELVNLDMTDIDLNTGYVRVMGKGAKE 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYL 254
           R+VPL      A+  Y       L    + P   +F    G+ ++    +  + +  R +
Sbjct: 180 RVVPLGQFAINALKAYLTHGRTRLACRSKEPSEAVFLNKAGQRISVRSIRDIVNKYVRKI 239

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            +    + H +RHSFATHLL  G DLR++Q +LGH ++STTQIYT+V  ++    + E+Y
Sbjct: 240 SIRQRVSPHIIRHSFATHLLDAGADLRTVQELLGHVKMSTTQIYTHVTREH----LKEVY 295

Query: 315 DQTHPSI 321
            + HP  
Sbjct: 296 KKAHPRA 302


>gi|288940120|ref|YP_003442360.1| tyrosine recombinase XerD [Allochromatium vinosum DSM 180]
 gi|288895492|gb|ADC61328.1| tyrosine recombinase XerD [Allochromatium vinosum DSM 180]
          Length = 297

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 92/304 (30%), Positives = 149/304 (49%), Gaps = 15/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   L +ERGLS+ TL +Y+ D R F  +L+          T+      ++  ++++
Sbjct: 7   IEGFADALWMERGLSRNTLTAYQSDLRAFAHWLSQERGR-----TLIAAERADLLDYLAR 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q    RS  R LS ++ F ++L++R +        +   K    LP++L+E     L
Sbjct: 62  LAKQGRNPRSSARLLSCLRQFYQHLRRRGLIEADPSARVEAPKLGRPLPKSLSEADVEAL 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +     +          R+  +L +LY  GLR+SE ++LTP  +   Q  +RI GKG K 
Sbjct: 122 L-----NAPDTEDARGHRDRTMLEVLYASGLRVSELVNLTPSQVSLTQGVVRILGKGGKE 176

Query: 198 RIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       + +Y     FD L       LF   R   +    F + I++     G+
Sbjct: 177 RLVPLGEDACNWLRDYVRGPRFDILGGRASDFLFPTRRSDCMTRQAFWQLIKRYAILAGV 236

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V  +     + +++ +
Sbjct: 237 AKPLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARER----LKQLHAR 292

Query: 317 THPS 320
            HP 
Sbjct: 293 HHPR 296


>gi|220920293|ref|YP_002495594.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|259710433|sp|B8I9N8|XERC_METNO RecName: Full=Tyrosine recombinase xerC
 gi|219944899|gb|ACL55291.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 322

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 121/314 (38%), Positives = 179/314 (57%), Gaps = 8/314 (2%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           + +L +    WL  L+ ER  S+ T+++Y  D RQFL  LA  +     I  +  L   +
Sbjct: 13  APDLREAAAAWLAVLKTERRFSENTVEAYGRDLRQFLAHLA-RSGAAPDIPALVALKPRD 71

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +RAF++ RR + +  RSL R+L+ ++SF ++L +    T S +  +R+ K    LPR L 
Sbjct: 72  LRAFMAARRAEGVSGRSLMRALAALRSFARHLDREGHGTVSALSAVRSPKVERRLPRPLP 131

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLR 189
              A+ +    +        W+ AR++A+L LLYG GLRI EAL +  ++  + D  TL 
Sbjct: 132 VAAAVAMASPDIRAGEDRPDWVLARDAAVLALLYGAGLRIGEALGIRRKDAPVGDIDTLT 191

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           I GKG K R+VP++  V+ A+ +Y  +CP  L      PLF G +G PL+P + Q  +  
Sbjct: 192 ILGKGQKTRMVPVIAPVQAAVADYLAVCPHPL--PPDGPLFVGQKGGPLSPRIVQLAVAS 249

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           LR  LGLP S T H LRHSFATHLL+  GDLR+IQ +LGH  L+TTQ+YT V+S      
Sbjct: 250 LRGALGLPDSATPHALRHSFATHLLARQGDLRAIQDLLGHASLATTQVYTKVDSAR---- 305

Query: 310 MMEIYDQTHPSITQ 323
           ++  +D  HP   +
Sbjct: 306 LLSAFDAAHPRAGR 319


>gi|283479632|emb|CAY75548.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 316

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 95/306 (31%), Positives = 150/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L IER L++ T+ SY  D R    +LA      + ++         ++ F+++
Sbjct: 26  IEQFLDALWIERNLAQNTVDSYRLDLRSLGDWLAHQQLSLLNVEVFN------LQEFLAQ 79

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q   L
Sbjct: 80  RLEGGYKATSSARLLSAMRRLFQYLYREKLREDDPSALLSSPKLPQRLPKDLSEAQVERL 139

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +    L        I+ R+ A+L LLY  GLR++E + LT  +I   Q  +R+ GKG+K 
Sbjct: 140 LQAPCLEQP-----IELRDKAMLELLYATGLRVTELVGLTLSDISLRQGVVRVIGKGNKE 194

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       I +Y     P+ LN      LF   R K +    F   I+      G+
Sbjct: 195 RLVPMGEEAVHWIEQYIEYGRPWLLNGQTIDVLFPSNRAKQMTRQTFWHRIKHYATLAGI 254

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 255 DSDKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 310

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 311 QHHPRA 316


>gi|228960047|ref|ZP_04121711.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228799563|gb|EEM46516.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 299

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 87/309 (28%), Positives = 155/309 (50%), Gaps = 17/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R ++
Sbjct: 5   KLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYL 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +K+  +S+ R +S ++S  ++L +     ++        KK  S+P+ L  ++  
Sbjct: 60  TTLYDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELE 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L +      S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG 
Sbjct: 120 ELFE-----VSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGK 174

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K R +P     + +++ Y +     L          +F   +G PL     +  + +L +
Sbjct: 175 KQRYIPFGSYAQDSLITYIENGRKQLVNKTDEDSHMVFLNAKGTPLTSRGVRYVLNELIK 234

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +     +  
Sbjct: 235 KASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER----LRS 290

Query: 313 IYDQTHPSI 321
           +Y + HP  
Sbjct: 291 VYMKHHPRA 299


>gi|104783227|ref|YP_609725.1| site-specific tyrosine recombinase XerD [Pseudomonas entomophila
           L48]
 gi|95112214|emb|CAK16941.1| site-specific tyrosine recombinase, integrase family [Pseudomonas
           entomophila L48]
          Length = 298

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 96/304 (31%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GLS  T  SY  D   F  +L            +       I   ++ 
Sbjct: 9   IDQFLDALWLEKGLSDNTRTSYRSDLALFNGWLQEQG------VALPDAGRELILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  Q    RS  R LSG++ F +YL + ++      L +   +    LP++L+E     L
Sbjct: 63  RFDQAYKPRSTARFLSGVRGFYRYLLRERMIAVDPTLQVDMPQLGRPLPKSLSEADVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +           + I  R+ A+L +LY CGLR++E +SLT   +   Q  LR+ GKG K 
Sbjct: 123 L-----KAPDLGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y      +L N      LF  +RG+ +    F   I+   R  G+
Sbjct: 178 RLVPMGEEAVLWLERYLRDGRAELLNGRPSDVLFPSLRGEQMTRQTFWHRIKHHARVAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + +++ Q
Sbjct: 238 DKPLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR----LQQLHAQ 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|30021919|ref|NP_833550.1| site-specific tyrosine recombinase XerC [Bacillus cereus ATCC
           14579]
 gi|29897475|gb|AAP10751.1| Integrase/recombinase (XerC/CodV family) [Bacillus cereus ATCC
           14579]
          Length = 294

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 154/307 (50%), Gaps = 17/307 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R +++ 
Sbjct: 2   LQLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYLTT 56

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +K+  +S+ R +S ++S  ++L +     ++        KK  S+P+ L  ++   L
Sbjct: 57  LHDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEEL 116

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            +      S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG K 
Sbjct: 117 FE-----VSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 171

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           R +P     + +++ Y +     L          +F   +G PL     +  + +L +  
Sbjct: 172 RYIPFGSYAQDSLITYIENGRKQLVNKTDEDSHMVFLNAKGTPLTSRGVRYVLNELIKKA 231

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +     +  +Y
Sbjct: 232 SLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER----LRSVY 287

Query: 315 DQTHPSI 321
            + HP  
Sbjct: 288 MKHHPRA 294


>gi|16767219|ref|NP_462834.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167553868|ref|ZP_02347612.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167993887|ref|ZP_02574980.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168233881|ref|ZP_02658939.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168822681|ref|ZP_02834681.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194470289|ref|ZP_03076273.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197251815|ref|YP_002148873.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|224585764|ref|YP_002639563.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238912952|ref|ZP_04656789.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|2497413|sp|P55888|XERC_SALTY RecName: Full=Tyrosine recombinase xerC
 gi|1916339|gb|AAC45778.1| site-specific recombinase [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|6960253|gb|AAF33443.1| S. typhimurium site-specific recombinase (XERC) (SP:P55888);
           contains similarity to Pfam family PF00589 ('Phage'
           integrase family), score=227.1, E=2.5e-64, N=1
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|16422513|gb|AAL22793.1| putative site-specific integrase/recombinase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|194456653|gb|EDX45492.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197215518|gb|ACH52915.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|205321790|gb|EDZ09629.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205328137|gb|EDZ14901.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205332099|gb|EDZ18863.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205340961|gb|EDZ27725.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|224470292|gb|ACN48122.1| tyrosine recombinase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261249072|emb|CBG26933.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267996228|gb|ACY91113.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160464|emb|CBW19994.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312915067|dbj|BAJ39041.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320088359|emb|CBY98119.1| Tyrosine recombinase xerC [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321225467|gb|EFX50524.1| Tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323132296|gb|ADX19726.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332990784|gb|AEF09767.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 300

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 87/315 (27%), Positives = 151/315 (47%), Gaps = 17/315 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +    L ++   +L+ L +ER LS +TL +Y+      +         +  +++ +Q   
Sbjct: 1   MTDVALSQDVSRFLRYLGVERQLSPITLLNYQRQLDAIIALAG-----ETGLKSWQQCDA 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R+F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ 
Sbjct: 56  AIVRSFAVRSRRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKN 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++      L+D  L         +  R+ A+L ++YG GLR+SE + L  +++  D   +
Sbjct: 116 IDVDDVNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEV 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +P+  +    I  + DL    L  + +  LF    GK ++    Q+   
Sbjct: 170 WVMGKGSKERRLPIGRNAVTWIEHWLDLRG--LFASDEEALFLSKLGKRISARNVQKRFA 227

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++   
Sbjct: 228 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 284

Query: 309 WMMEIYDQTHPSITQ 323
            +  +YD  HP   +
Sbjct: 285 -LASVYDAAHPRAKR 298


>gi|193068085|ref|ZP_03049050.1| tyrosine recombinase XerC [Escherichia coli E110019]
 gi|192958705|gb|EDV89143.1| tyrosine recombinase XerC [Escherichia coli E110019]
          Length = 298

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 89/311 (28%), Positives = 153/311 (49%), Gaps = 17/311 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+      + F +     +  +Q+ +Q   T +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFAS-----ENGLQSWQQCDVTMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGTGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGCKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHPSITQ 323
           +YD  HP   +
Sbjct: 286 VYDAAHPRAKR 296


>gi|119505219|ref|ZP_01627294.1| site-specific tyrosine recombinase XerD [marine gamma
           proteobacterium HTCC2080]
 gi|119458910|gb|EAW40010.1| site-specific tyrosine recombinase XerD [marine gamma
           proteobacterium HTCC2080]
          Length = 282

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 89/295 (30%), Positives = 148/295 (50%), Gaps = 15/295 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +ERGLS+ TL +Y  D   +  +LA     + T +++     ++I++++  +  Q    R
Sbjct: 1   MERGLSENTLAAYRRDLSLYDEWLA-----EQTAESLLTAGSSQIQSYLGLKLRQGASPR 55

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R LS  +SF ++  +     E   L + + K+   LP++L+E     L+        
Sbjct: 56  SSARFLSAARSFYRWALREGHIVEDPTLRIESPKQGRPLPKSLSETDVERLL-----GAP 110

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                ++ R+  +L +LY CGLR+SE + L  + +  +Q  +R+ GKG K R+VP+    
Sbjct: 111 DLELALEFRDRTMLEMLYACGLRVSELVGLQVEQVGLNQGIVRVLGKGGKERLVPMGEEA 170

Query: 207 RKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              +++Y        L       LF   R + +    F   I+      G+    + HTL
Sbjct: 171 LDWLIQYMRGPRIELLKGQSSNVLFPSNRSREMTRQTFWYRIKLYGERAGIQSHLSPHTL 230

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           RH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V  +     M E+++  HP 
Sbjct: 231 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKQR----MQELHEHHHPR 281


>gi|297620964|ref|YP_003709101.1| Tyrosine recombinase XerD [Waddlia chondrophila WSU 86-1044]
 gi|297376265|gb|ADI38095.1| Tyrosine recombinase XerD [Waddlia chondrophila WSU 86-1044]
          Length = 292

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 94/307 (30%), Positives = 162/307 (52%), Gaps = 16/307 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++++  ++L  L  E+GL++ T+++Y+ D   F+  L     E   IQ   ++   EI  
Sbjct: 1   MIEQLDDFLIYLGSEKGLTQNTIEAYQRDVFSFISHL-----ESKGIQGFNEVGQEEIVD 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+S  +++++   ++ R L  IK F ++LK+  +   +  L +++ K    +P  L  ++
Sbjct: 56  FLSYLKSRQLAVSTISRHLIAIKVFFRFLKREGVVENNVSLYLQSPKGWQIIPDVLTMEE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                  +LL+          R+ AIL LLY CGLR+SE   +  ++   ++ T+R+ GK
Sbjct: 116 ME-----ILLNQPDPETSEGVRDRAILELLYACGLRVSELCQMKIED--LEEETVRVFGK 168

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K RIVPL     +AI  Y        +++    LF   RGKP+N  +  + I++    
Sbjct: 169 GRKERIVPLGSHASQAINRYLAKRADCKSIDEAGYLFVNKRGKPMNRVLIWKMIKEYGAQ 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+  S + HT+RHSFATHLL NG +LR IQ +LGH  +S+T  YT+++       +   
Sbjct: 229 AGITKSLSPHTMRHSFATHLLDNGAELRVIQEMLGHASISSTDRYTHIS----RIHLQNA 284

Query: 314 YDQTHPS 320
           +D+ HP 
Sbjct: 285 FDRYHPR 291


>gi|320354502|ref|YP_004195841.1| tyrosine recombinase XerC [Desulfobulbus propionicus DSM 2032]
 gi|320123004|gb|ADW18550.1| tyrosine recombinase XerC [Desulfobulbus propionicus DSM 2032]
          Length = 303

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 85/318 (26%), Positives = 153/318 (48%), Gaps = 24/318 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +    + +++ L +E+G S  T   Y+ D  +F  F          + +   ++ + ++A
Sbjct: 1   MTDLVERFVRWLLVEKGYSPHTADGYQRDLLEFQRFCG-------GVLSPESITSSLVQA 53

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+           S+ R LS +++F ++L + K+     +  +   K  ++LP  L   +
Sbjct: 54  FVGSLYASNASA-SVARKLSALRTFFRFLLREKVIESDPVAGIVGPKLGHALPAFLTVDE 112

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
             +L++     T   +     R+ A++ +LY  G+R++E +    +++      +R++GK
Sbjct: 113 VFSLLE-----TPATSDRYWRRDRAVMEVLYATGMRVAELVGCNREDVDLAAEMVRVRGK 167

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCP-------FDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           G K R+VP   +  +A+ +Y                   Q  LF   RG  L+    +R 
Sbjct: 168 GRKERLVPFGRAAHEALEQYLPEREALCIARVQRGRKPEQRALFLNGRGTRLSARSVERS 227

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           I+      G+ ++ T H LRHSFATHLL  G DLR++Q +LGH  LSTTQ YT++N    
Sbjct: 228 IQTYALRAGIGVTVTPHALRHSFATHLLEMGADLRTVQELLGHVSLSTTQKYTHIN---- 283

Query: 307 GDWMMEIYDQTHPSITQK 324
            D + ++YDQ HP   +K
Sbjct: 284 IDHLSKVYDQAHPQAQKK 301


>gi|84514470|ref|ZP_01001834.1| tyrosine recombinase [Loktanella vestfoldensis SKA53]
 gi|84511521|gb|EAQ07974.1| tyrosine recombinase [Loktanella vestfoldensis SKA53]
          Length = 306

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 123/312 (39%), Positives = 182/312 (58%), Gaps = 9/312 (2%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++  L     +WL +     G+++ T+ +Y  D   F+ FL  +  +   +  + +++ +
Sbjct: 4   IAPALTATLDHWLDHERALAGVAENTIVAYRADVLGFMAFLTQHNGDTQGLGPLARVTLS 63

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++RA+++  R + +  RSL RSLS +KSF ++L  R+    + +L+ R  K    LPR L
Sbjct: 64  DMRAWMAHERGRGVAARSLARSLSAVKSFYRWLAAREGFEPTAVLSTRAPKFQPKLPRPL 123

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +   A  ++D + L       W+ AR++A++ LLYGCGLRISEALSL  ++       LR
Sbjct: 124 SAPAASDMIDQIGLQACDP--WVAARDTAVVTLLYGCGLRISEALSLQGRDAPL-PPVLR 180

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           I GKG K RIVP+L   R A+  Y  LCP++   +   PLFR IRG PL P   Q+ + Q
Sbjct: 181 ITGKGGKQRIVPVLDIARDAVAGYLRLCPYEQAADA--PLFRAIRGGPLAPRAIQKVVEQ 238

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            R  LGLP + T H LRHSFATHL++ GGDLR IQ +LGH  LSTTQ YT V++      
Sbjct: 239 TRLQLGLPGTATPHALRHSFATHLMAAGGDLRCIQELLGHASLSTTQAYTAVDAAQ---- 294

Query: 310 MMEIYDQTHPSI 321
           +M +YD+ HP  
Sbjct: 295 LMAVYDRAHPKA 306


>gi|51892621|ref|YP_075312.1| recombinase [Symbiobacterium thermophilum IAM 14863]
 gi|51856310|dbj|BAD40468.1| recombinase [Symbiobacterium thermophilum IAM 14863]
          Length = 356

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 93/346 (26%), Positives = 157/346 (45%), Gaps = 45/346 (13%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA---------------------- 51
           L  E   +L +L +E+  S+ TL+SY  D  QF  +LA                      
Sbjct: 13  LGPEVAGFLASLSVEKSASQHTLRSYRLDLAQFYAWLASGGTTAPVVGGRGSGRTRRHDF 72

Query: 52  ----FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI 107
                     + +  +R +++  IR++++  + Q+   R++ R LS ++SF KYL +  +
Sbjct: 73  AAQQEEPVRPVGLDELRAVNHLTIRSYLAFLQRQEFSRRTIARKLSCLRSFYKYLVRADL 132

Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
              + +  +   K    LP  L+E++        LL        +  R+ A+L LLY  G
Sbjct: 133 VPTNPVAGVHTPKLERRLPVFLDEEEI-----GGLLSQPDTHTPLGLRDRALLELLYATG 187

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-- 225
           LR+ E ++L   +I   +  + + GKG K R VP+     +A+  Y       L      
Sbjct: 188 LRVGELVALNRGDIDYSEGWVIVWGKGRKERAVPVGSEALQALGHYLRDGWPVLRARAPA 247

Query: 226 --------QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
                   + PLF    G  L+    +R + +    L L    + H +RH+FATH+L++G
Sbjct: 248 AEQSLPEAKQPLFLNKLGGRLSDRSVRRLLDRYVSQLALSRQISPHKIRHTFATHMLNHG 307

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            DLR++Q +LGH  LSTTQIYT+V ++     +   Y + HP   +
Sbjct: 308 ADLRAVQEMLGHASLSTTQIYTHVTTQR----LRTEYLRAHPRQRR 349


>gi|157144439|ref|YP_001451758.1| site-specific tyrosine recombinase XerC [Citrobacter koseri ATCC
           BAA-895]
 gi|157081644|gb|ABV11322.1| hypothetical protein CKO_00153 [Citrobacter koseri ATCC BAA-895]
          Length = 300

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 89/315 (28%), Positives = 150/315 (47%), Gaps = 17/315 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +    L ++   +L+ L +ER LS +TL +Y+      +         +  +Q+ +Q   
Sbjct: 1   MTELSLSQDVARFLRYLGVERQLSPITLLNYQRQLDAIIALAG-----ETGLQSWQQCDA 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +RAF  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ 
Sbjct: 56  AMVRAFAVRSRRKGLGPASLALRLSALRSFFDWLVSQGELNANPAKGVSAPKAPRHLPKN 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++      L+D  L         +  R+ A+L ++YG GLR+SE + L  +++  D   +
Sbjct: 116 IDVDDINRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEV 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +P+  +    I  + DL    L  +    LF    GK ++    Q+   
Sbjct: 170 WVMGKGSKERRLPIGRNAVAWIEHWLDLRG--LFGSDDDALFLSKLGKRISARNVQKRFA 227

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++   
Sbjct: 228 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 284

Query: 309 WMMEIYDQTHPSITQ 323
            +  +YD  HP   +
Sbjct: 285 -LASVYDAAHPRAKR 298


>gi|271499210|ref|YP_003332235.1| tyrosine recombinase XerD [Dickeya dadantii Ech586]
 gi|270342765|gb|ACZ75530.1| tyrosine recombinase XerD [Dickeya dadantii Ech586]
          Length = 299

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 92/306 (30%), Positives = 150/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L +ER L++ TL SY  D      +LA +       + + +   ++++ F+++
Sbjct: 9   IEQFLDALWLERNLAENTLSSYRNDLSSLAEWLAHHD------RHLLEAQPSDLQDFLAE 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++   +YL + K  T+     + + K    LP+ L E Q   L
Sbjct: 63  RLEGGYKATSSARLLSAMRRLFQYLYREKRRTDDPSAPLSSPKLPQRLPKDLTEAQVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +           + I+ R+ A+L LLY  GLR+SE + LT  ++   Q  +R+ GKG+K 
Sbjct: 123 L-----AAPVTDQPIELRDKAMLELLYATGLRVSELVGLTMSDVSLRQGVVRVVGKGNKE 177

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       + +Y     P+ LN      LF   R + +    F   I+       +
Sbjct: 178 RLVPLGEEAVYWLEQYLEYSRPWLLNGQTLDVLFPSNRAQQMTRQTFWHRIKHYATLASI 237

Query: 257 PL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 238 DSNKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQ 293

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 294 QHHPRA 299


>gi|254466182|ref|ZP_05079593.1| tyrosine recombinase XerC [Rhodobacterales bacterium Y4I]
 gi|206687090|gb|EDZ47572.1| tyrosine recombinase XerC [Rhodobacterales bacterium Y4I]
          Length = 306

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 126/313 (40%), Positives = 177/313 (56%), Gaps = 9/313 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++S       Q WL+ L      S  TL +Y  D   FL F+  +      +  + +++ 
Sbjct: 3   LISPACRDALQLWLERLGGLEDASANTLAAYRGDVTAFLAFMTQHFGGPQGLGALARITT 62

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++RA+++  R    G RSL R LS +K+F ++L KR+    + +L  R  K    LPR 
Sbjct: 63  ADMRAWMASERNSGTGARSLARKLSAVKTFYRWLAKREGFEPAAVLLARAPKFQKKLPRP 122

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L  + A  +++ V L +  ET W+ AR+ A++ LLYGCGLRISEAL L   +       L
Sbjct: 123 LAPEAAKAVLEAVELQS--ETDWVAARDVAVVTLLYGCGLRISEALGLKGADAPL-PQVL 179

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKG K R+VP+LP+ R A+  Y +LCP         PLFRG+RG  LNP   Q  + 
Sbjct: 180 RILGKGRKERVVPVLPAARAAVDRYLELCPHPQERAA--PLFRGVRGGALNPRQIQGVMA 237

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           + R  LGLP + T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ YT V++ +   
Sbjct: 238 KTRAQLGLPATATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQTYTAVDTTH--- 294

Query: 309 WMMEIYDQTHPSI 321
            +M++Y + HP  
Sbjct: 295 -LMDVYMRAHPKA 306


>gi|227498489|ref|ZP_03928635.1| tyrosine recombinase xerC [Acidaminococcus sp. D21]
 gi|226903947|gb|EEH89865.1| tyrosine recombinase xerC [Acidaminococcus sp. D21]
          Length = 302

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 93/307 (30%), Positives = 154/307 (50%), Gaps = 18/307 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L +ER  S  T+ +Y+ D   F +FL+   +      T  ++S  +IR+++++ 
Sbjct: 10  ERFLRYLRVERNDSPNTILNYKDDLIAFSVFLSGRGK-----ATWLEVSLLDIRSYLAQL 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             ++   R++ R +S ++SF +YL +  +T ++    ++  K    LP  L E +     
Sbjct: 65  HREEKARRTIARRISSLRSFYRYLMREGLTDKNPFTKVKTPKLEKKLPVFLEEFEM---- 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            N LL     +  +  R+ A+L  LY  G R+SE + LT   +        + GKG K R
Sbjct: 121 -NHLLELPDLSTELGQRDRALLEFLYSTGCRVSELVGLTLTRLDLSNRYALLLGKGHKER 179

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYL 254
           IVPL     +A+  Y       L    ++P    +F   RG PL     +R + +     
Sbjct: 180 IVPLGHPCIRAMNAYLTGARRVLMEKYEVPSHDFIFVNHRGTPLTARSVRRILDRYVEMA 239

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            +    + HT+RH+FATHLL +G DLRS+Q +LGH  LSTTQIYT+V +    D +  +Y
Sbjct: 240 SIQKHVSPHTIRHTFATHLLDHGADLRSVQELLGHASLSTTQIYTHVTA----DRIASVY 295

Query: 315 DQTHPSI 321
            + HP  
Sbjct: 296 KKHHPRA 302


>gi|295095176|emb|CBK84266.1| tyrosine recombinase XerC subunit [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 300

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 86/310 (27%), Positives = 150/310 (48%), Gaps = 17/310 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L  +   +L+ L +ER LS +TL +Y+      +        ++I +++ +Q     +R 
Sbjct: 6   LATDVNRFLRYLGVERQLSPITLLNYQRQLDAIMQIA-----DEIGLKSWQQCDAATVRG 60

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+ + R + +   SL   LS ++SF  +L  +     +    +   K    LP+ ++   
Sbjct: 61  FVVRSRKKNLSPASLALRLSALRSFFDWLVSQGGLKANPAKGIATPKAPRHLPKNIDVDD 120

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D  L         +  R+ A+L ++YG GLR+SE ++L  +++  +   + + GK
Sbjct: 121 VNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVNLDLKHLDLESGEVWVMGK 174

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R +P+  +    I  + DL    L    +  LF    GK ++    Q+   +    
Sbjct: 175 GSKERRLPIGRNAVSWIEHWLDLRG--LFGADEDALFLSKLGKRISARNVQKRFAEWGIK 232

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  +
Sbjct: 233 QGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASV 288

Query: 314 YDQTHPSITQ 323
           YD  HP   +
Sbjct: 289 YDAAHPRAKR 298


>gi|238783654|ref|ZP_04627674.1| Tyrosine recombinase xerD [Yersinia bercovieri ATCC 43970]
 gi|238715367|gb|EEQ07359.1| Tyrosine recombinase xerD [Yersinia bercovieri ATCC 43970]
          Length = 299

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 91/306 (29%), Positives = 152/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L +ER L++ TL SY  D      +L  +         + +    E+++F+++
Sbjct: 9   IEQFLDALWLERNLAENTLASYRLDLHALTGWLDHHG------SDLLRAGSQELQSFLAE 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q  TL
Sbjct: 63  RIEGGYKATSSARLLSAMRRLFQYLYREKLRDDDPTAILSSPKLPQRLPKDLSEAQVDTL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +     ++ +    ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K 
Sbjct: 123 L-----NSPNVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKE 177

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       I  Y     P+ +N      LF   R + +    F   I+      G+
Sbjct: 178 RLVPLGEEAVYWIENYMDHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGI 237

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 238 DSERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQ 293

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 294 QHHPRA 299


>gi|54399934|gb|AAV34206.1| site-specific recombinase [Pseudomonas fluorescens]
          Length = 298

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 98/304 (32%), Positives = 147/304 (48%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GLS  T  +Y  D   F  +L     E I            I   ++ 
Sbjct: 9   IDQFLDALWLEKGLSDNTRDAYRSDLALFNGWLQENHLELINA------GRELILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  Q    RS  R LSG++ F +YL + K+      L +   +    LP++L+E     L
Sbjct: 63  RLEQNYKPRSTARFLSGLRGFYRYLLREKLIAVDPTLRVEMPQLGRPLPKSLSEADVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L     ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K 
Sbjct: 123 -----LAAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKE 177

Query: 198 RIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y  D     L       LF  +RG+ +    F   I+   +  G+
Sbjct: 178 RLVPMGEEAIVWVERYVRDARHELLGGRPSDALFPSLRGEQMTRQTFWHRIKHQAKVAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + +++ +
Sbjct: 238 NKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHV----ARARLQDLHAK 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|148655021|ref|YP_001275226.1| phage integrase family protein [Roseiflexus sp. RS-1]
 gi|254799356|sp|A5URM3|XERC_ROSS1 RecName: Full=Tyrosine recombinase xerC
 gi|148567131|gb|ABQ89276.1| phage integrase family protein [Roseiflexus sp. RS-1]
          Length = 313

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 95/311 (30%), Positives = 153/311 (49%), Gaps = 18/311 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            + + +L++L  ER L+  T+ +Y  D  QF  F++     +      R +S+ +I +F+
Sbjct: 3   DQVEAFLRHLADERNLAANTIAAYRTDLDQFCDFVSARNRRE-----WRDVSHDDILSFM 57

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
              R ++    ++ R ++ +KSF  +L             + + K    LPRAL   Q  
Sbjct: 58  LYLRERRYASSTVARRVAAVKSFFAFLTGSGAVPHDPTERIDSPKVDRDLPRALTPHQVD 117

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L++  L   + E      R+ A+L LLY  G+R+SE ++L   +I    ST+R  GK  
Sbjct: 118 ELLELPLRSPTPER----IRDKAMLELLYATGMRVSELVALNMTDIDLVHSTVRCTGKNG 173

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRR 252
           ++R++P+  S   A+ EY D     L      P   LF   RGK L    F   ++Q   
Sbjct: 174 RVRVLPINGSAATALEEYCDNSRSQLARGSDAPIDALFLNHRGKRLTRQGFWLILKQYAE 233

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            +GL    T H LRHSFA H+L+ G DLR++Q +LGH  +STTQIYT++N  +    +  
Sbjct: 234 EMGLG-ELTPHMLRHSFAVHMLNAGADLRAVQELLGHTSISTTQIYTHINHASSAQPVR- 291

Query: 313 IYDQTHPSITQ 323
               + P  T+
Sbjct: 292 ----SEPRATE 298


>gi|23099003|ref|NP_692469.1| site-specific tyrosine recombinase XerC [Oceanobacillus iheyensis
           HTE831]
 gi|34222801|sp|Q7ZAM5|XERC_OCEIH RecName: Full=Tyrosine recombinase xerC
 gi|22777231|dbj|BAC13504.1| integrase:recombinase [Oceanobacillus iheyensis HTE831]
          Length = 305

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 90/312 (28%), Positives = 153/312 (49%), Gaps = 17/312 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L      +++ L+IE+  S  T++ Y  D   F  FL         +  I  ++Y ++R
Sbjct: 3   QLELYIDTFVEYLQIEKNASPYTVKYYRNDLEIFADFL-----RSEGLSHIANVTYKDVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F++    Q++  RS+ R +S ++SF ++L++      +  + +   K S  +P  L ++
Sbjct: 58  IFLTSLYEQELSRRSVSRKISTLRSFYRFLEREGYVEGNPFVQLHLPKTSKPVPGFLYQE 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L +   + T      +  R+ A+L +LYG G+R+SE  +L  Q+I     T+ ++G
Sbjct: 118 ELDKLFEVNDITTP-----LGQRDQALLEMLYGTGIRVSECQNLRLQDIDFAIGTIFVRG 172

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           KG K R VP       A+  Y       L   + +    +F   RG  L     +  + +
Sbjct: 173 KGRKERYVPFGSFAEIALETYLQEGRTKLLEKSNSDTEFIFLNSRGGHLTNRGIRTILNK 232

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           +     L +    H LRH+FATHLL+ G DLRS+Q +LGH  LS+TQIYT+V      D 
Sbjct: 233 IVERASLTVHVHPHKLRHTFATHLLNEGADLRSVQELLGHESLSSTQIYTHVT----KDH 288

Query: 310 MMEIYDQTHPSI 321
           + E Y ++HP  
Sbjct: 289 LREAYMKSHPRA 300


>gi|168467636|ref|ZP_02701473.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195629975|gb|EDX48635.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 300

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 88/315 (27%), Positives = 151/315 (47%), Gaps = 17/315 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +    L  +   +L+ L +ER LS +TLQ+Y+      +         +  +++ +Q   
Sbjct: 1   MTDVALSLDVSRFLRYLGVERQLSPITLQNYQRQLDAIIALAG-----ETGLKSWQQCDA 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R+F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ 
Sbjct: 56  AIVRSFAVRSRRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKN 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++      L+D  L         +  R+ A+L ++YG GLR+SE + L  +++  D   +
Sbjct: 116 IDVDDVNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEV 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +P+  +    I  + DL    L  + +  LF    GK ++    Q+   
Sbjct: 170 WVMGKGSKERRLPIGRNAVTWIEHWLDLRG--LFASDEEALFLSKLGKRISVRNVQKRFA 227

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++   
Sbjct: 228 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 284

Query: 309 WMMEIYDQTHPSITQ 323
            +  +YD  HP   +
Sbjct: 285 -LASVYDAAHPRAKR 298


>gi|57866964|ref|YP_188637.1| tyrosine recombinase XerD [Staphylococcus epidermidis RP62A]
 gi|293366542|ref|ZP_06613219.1| integrase/recombinase XerD [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81674519|sp|Q5HP53|XERD_STAEQ RecName: Full=Tyrosine recombinase xerD
 gi|57637622|gb|AAW54410.1| tyrosine recombinase XerD [Staphylococcus epidermidis RP62A]
 gi|291319311|gb|EFE59680.1| integrase/recombinase XerD [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329725406|gb|EGG61889.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU144]
 gi|329735284|gb|EGG71576.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU045]
          Length = 295

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 152/305 (49%), Gaps = 15/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  ++IE+GLS  T+ +Y  D +++  +L     E   I  I  +    I+  +  
Sbjct: 5   IEEYLNFIQIEKGLSNNTIGAYRRDLKKYKDYL-----EDNKISHIDFIDRQIIQECLGH 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                   +SL R +S I+SF ++  + K   +   + +   K    LP  L   + + L
Sbjct: 60  LIDMGQSSKSLARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEIDEVIAL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++     T   TK    R+  +L LLY  G+R++E + L  +++      +R+ GKG+K 
Sbjct: 120 LE-----TPDLTKNNGYRDRTMLELLYATGMRVTEIIQLDVEDVNLMMGFVRVFGKGNKE 174

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVPL  +V + +  Y   + P  L       LF  + GK L+     + I+Q      +
Sbjct: 175 RIVPLGDTVIEYLTTYIETVRPQLLKQTTTQALFLNMHGKSLSRQGIWKIIKQYGLKANI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y Q
Sbjct: 235 NKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYTQ 290

Query: 317 THPSI 321
            HP  
Sbjct: 291 FHPRA 295


>gi|325273831|ref|ZP_08140016.1| site-specific tyrosine recombinase XerD [Pseudomonas sp. TJI-51]
 gi|324101037|gb|EGB98698.1| site-specific tyrosine recombinase XerD [Pseudomonas sp. TJI-51]
          Length = 298

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 95/304 (31%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GLS  T  SY  D   F  +L   +        +       I   ++ 
Sbjct: 9   IDQFLDALWLEKGLSDNTRVSYRSDLALFNGWLHERS------VALPDAGRDLILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  Q    RS  R +SG++ F +YL + K+      L +   +    LP++L+E     L
Sbjct: 63  RLEQGYKPRSTARFISGLRGFFRYLLREKLVAIDPTLQVDMPQLGKPLPKSLSEADVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +           + I  R+ A+L +LY CGLR++E +SL    +   Q  LR+ GKG K 
Sbjct: 123 L-----QAPDLGEAIGQRDRAMLEVLYACGLRVTELVSLALDQVNLRQGVLRVMGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y      +L N      LF  +RG+ +    F   I+   R  G+
Sbjct: 178 RLVPMGEEAVVWLERYLRSGRAELLNGRPSDVLFPSLRGEQMTRQTFWHRIKHHARVAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + +++ Q
Sbjct: 238 DKPLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR----LQQLHAQ 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|197262705|ref|ZP_03162779.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197240960|gb|EDY23580.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
          Length = 300

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 87/315 (27%), Positives = 151/315 (47%), Gaps = 17/315 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +    L ++   +L+ L +ER LS +TL +Y+      +         +  +++ +Q   
Sbjct: 1   MTDVALSQDVSRFLRYLGVERQLSPITLLNYQRQLDAIIALAG-----ETGLKSWQQCDA 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R+F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ 
Sbjct: 56  AIVRSFAVRSRRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKN 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++      L+D  L         +  R+ A+L ++YG GLR+SE + L  +++  D   +
Sbjct: 116 IDVDDVNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEV 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +P+  +    I  + DL    L  + +  LF    GK ++    Q+   
Sbjct: 170 WVMGKGSKERRLPIGRNAVTWIEHWLDLRG--LFASDEEALFLSKLGKRISVRNVQKRFA 227

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++   
Sbjct: 228 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 284

Query: 309 WMMEIYDQTHPSITQ 323
            +  +YD  HP   +
Sbjct: 285 -LASVYDAAHPRAKR 298


>gi|261343068|ref|ZP_05970926.1| tyrosine recombinase XerC [Enterobacter cancerogenus ATCC 35316]
 gi|288314633|gb|EFC53571.1| tyrosine recombinase XerC [Enterobacter cancerogenus ATCC 35316]
          Length = 300

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 87/315 (27%), Positives = 153/315 (48%), Gaps = 17/315 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +    L  +   +L+ L +ER LS +TL +Y+      +        ++I +++ +Q   
Sbjct: 1   MTDALLATDVTRFLRYLGVERQLSPVTLLNYQRQLDAIMQIA-----DEIGLKSWQQCDA 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R F+ + R +K+   SL   LS ++SF  +L  + +   +    +   K    LP+ 
Sbjct: 56  ATVRGFVVRSRKKKLSPASLALRLSALRSFFDWLVSQGVLKANPAKGIATPKAPRHLPKN 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++      L+D  L         +  R+ A+L ++YG GLR+SE ++L  +++  +   +
Sbjct: 116 IDVDDVNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVNLDLKHLDLESGEV 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +P+  +    I  + DL    L    +  LF    GK ++    Q+   
Sbjct: 170 WVMGKGSKERRLPIGRNAVSWIEHWLDLRG--LFGAEENALFLSKLGKRISARNVQKRFA 227

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++   
Sbjct: 228 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 284

Query: 309 WMMEIYDQTHPSITQ 323
            +  +YD  HP   +
Sbjct: 285 -LASVYDAAHPRAKR 298


>gi|213969060|ref|ZP_03397199.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato T1]
 gi|301384045|ref|ZP_07232463.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           tomato Max13]
 gi|302058751|ref|ZP_07250292.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           tomato K40]
 gi|302131712|ref|ZP_07257702.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213926058|gb|EEB59614.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato T1]
          Length = 298

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 95/304 (31%), Positives = 141/304 (46%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GLS  T  SY  D   F  +L     +              I   ++ 
Sbjct: 9   IDQFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPGA------GREVILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R       RS  R LSG + F +YL + K+ +    L +   +    LP++L+E     L
Sbjct: 63  RVENAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +          ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K 
Sbjct: 123 L-----AAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y        L       LF   RG  +    F   I+      G+
Sbjct: 178 RLVPMGEEAIVWVERYMRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ +
Sbjct: 238 GKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHV----ARARLQEMHAK 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|330828608|ref|YP_004391560.1| Tyrosine recombinase XerD [Aeromonas veronii B565]
 gi|328803744|gb|AEB48943.1| Tyrosine recombinase XerD [Aeromonas veronii B565]
          Length = 303

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 151/305 (49%), Gaps = 16/305 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L +ERGLS  T+ SY  D  +F ++L           ++      EI+ +++ 
Sbjct: 14  IEPFLDALWLERGLSDNTVSSYRSDLEKFSLWLDEQG------SSLLLAGMDEIQHYLAW 67

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R   +    S  R LS ++ F +YL + K+ ++   + +   K    LP  L+E +   L
Sbjct: 68  RVDHQFAASSTARFLSALRRFYQYLNREKLRSDDPTVLLEGPKLPKKLPSDLSETEVEAL 127

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +   L+        ++ R+ A+L LLY  GLR+SE + LT +++   Q  +R+ GKG+K 
Sbjct: 128 LSAPLV-----DDPLELRDKAMLELLYATGLRVSELVGLTAEHVSLRQGLVRVVGKGNKE 182

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  YY       L       +F   + + +    F   I+      G+
Sbjct: 183 RLVPMGEEAMHWLERYYREARTLLLGGTSSDVVFPSKQARMMTRQTFWHRIKLYALRAGI 242

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  ++ +
Sbjct: 243 NGELSPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVANER----LKALHGE 298

Query: 317 THPSI 321
            HP  
Sbjct: 299 HHPRA 303


>gi|289667446|ref|ZP_06488521.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 305

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 92/316 (29%), Positives = 152/316 (48%), Gaps = 19/316 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK-----ITIQTIRQLSYT 69
           +     +L  L++ER +S  TL +Y  D    + + A +  E       T     QL   
Sbjct: 1   MSSVDEFLSYLQVERQVSAHTLDAYRRDLAALVAWTAEHNTEDGAQQTATPLDTAQLDSA 60

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R F++    + +  +SL+R LS  +S+  +L K      S    MR  K    LP+ L
Sbjct: 61  HLRQFVAAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIASSPAAAMRAPKSPRKLPQVL 120

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  +A+ LV+            +  R+ A+L L Y  GLR+SE  +L  +++  D   + 
Sbjct: 121 DADEAVRLVEVP------TDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVM 174

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG K R+VP+      A+ E+      D   +    +F G  G  ++    Q  I+Q
Sbjct: 175 VLGKGSKQRLVPVGSHAIAALREWL----RDSGASADTHVFPGRAGGAISQRAVQIRIKQ 230

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           L    G+      H LRHSFA+H+L + GDLR +Q +LGH  ++TTQIYT+++ ++    
Sbjct: 231 LALRQGMFKDVHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQH---- 286

Query: 310 MMEIYDQTHPSITQKD 325
           + ++YD  HP   +K 
Sbjct: 287 LAKVYDAAHPRAKRKK 302


>gi|259909555|ref|YP_002649911.1| Tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
 gi|224965177|emb|CAX56709.1| Tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 309

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 95/306 (31%), Positives = 150/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L IER L++ T+ SY  D R    +LA      + ++         ++ F+++
Sbjct: 19  IEQFLDALWIERNLAQNTVDSYRLDLRSLGDWLAHQQLSLLNVEVFN------LQEFLAQ 72

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q   L
Sbjct: 73  RLEGGYKATSSARLLSAMRRLFQYLYREKLREDDPSALLSSPKLPQRLPKDLSEAQVERL 132

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +    L        I+ R+ A+L LLY  GLR++E + LT  +I   Q  +R+ GKG+K 
Sbjct: 133 LQAPCLEQP-----IELRDKAMLELLYATGLRVTELVGLTLSDISLRQGVVRVIGKGNKE 187

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       I +Y     P+ LN      LF   R K +    F   I+      G+
Sbjct: 188 RLVPMGEEAVHWIEQYIEYGRPWLLNGQTIDVLFPSNRAKQMTRQTFWHRIKHYATLAGI 247

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 248 DSDKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 303

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 304 QHHPRA 309


>gi|323493661|ref|ZP_08098782.1| site-specific tyrosine recombinase XerD [Vibrio brasiliensis LMG
           20546]
 gi|323312184|gb|EGA65327.1| site-specific tyrosine recombinase XerD [Vibrio brasiliensis LMG
           20546]
          Length = 302

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 90/306 (29%), Positives = 148/306 (48%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L ++ +ERGLS+ TL SY  D  + L ++            +  +S + ++ + S 
Sbjct: 12  VEQFLDSMWMERGLSENTLASYRNDLVKLLQWMTANNYR------LDFISLSGLQEYQSW 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    S  R LS I+   +YL + KI ++     + + K    LP+ L E Q   L
Sbjct: 66  LSDSGYKQTSRARMLSAIRRLFQYLHREKIRSDDPSALLVSPKLPKRLPKDLTEDQVEAL 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +     +       ++ R+ A+L LLY  GLR++E +SLT +NI   Q  +R+ GKG K 
Sbjct: 126 L-----NAPDPNDAMELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKE 180

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +  + I  +        L       +F   R + +    F   I+      G+
Sbjct: 181 RLVPMGENAVEWIETFLQQGRSELLGETTSDVVFPSKRARQMTRQTFWHRIKHYAVLAGI 240

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 241 DTELLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHS 296

Query: 316 QTHPSI 321
           + HP  
Sbjct: 297 EHHPRA 302


>gi|302191354|ref|ZP_07267608.1| tyrosine recombinase XerD [Lactobacillus iners AB-1]
 gi|312871387|ref|ZP_07731482.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 3008A-a]
 gi|311093040|gb|EFQ51389.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 3008A-a]
          Length = 296

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 95/309 (30%), Positives = 162/309 (52%), Gaps = 18/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
              +++L+  +IERGLS  TL SY  D  ++  FL     + + I T  ++    I +F 
Sbjct: 3   DSLEDYLRFAQIERGLSNNTLLSYRQDLLEYFSFL-----KSLGITTW-EVDALIIDSFF 56

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++ R +     S+ R LS ++ F ++L ++ +  +  +L + + KK   LP A++  +  
Sbjct: 57  AQERDKGKAIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPTAMSTTEVT 116

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L++         T  +  R+ AIL  LY  G+R+SE ++L   +I ++   +++ GKG 
Sbjct: 117 KLINM-----PDTTTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGS 171

Query: 196 KIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K R++P+       I +Y           +   +  +F   RG  +      + I++  +
Sbjct: 172 KQRLIPISNVAMSWIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQ 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+  + T HTLRH+FATHLL NG DLR +Q ILGH  +STTQIYTN+  K+    +M+
Sbjct: 232 LAGINKNVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKH----IMD 287

Query: 313 IYDQTHPSI 321
           +Y +THP I
Sbjct: 288 VYKRTHPRI 296


>gi|315163991|gb|EFU08008.1| tyrosine recombinase XerD [Enterococcus faecalis TX1302]
          Length = 296

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 94/310 (30%), Positives = 165/310 (53%), Gaps = 16/310 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++  ++L  L+IERGLS  T +SYE D ++++ FL     ++  + +  ++    I  
Sbjct: 1   MEEQLVDYLHYLQIERGLSNNTRRSYERDLKKYVAFL-----QEQGLHSWDEVDRYMITE 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+     ++    S+ R +S ++ F ++L++ +++  + + ++ + KK   LP  L+  +
Sbjct: 56  FLQSLHEEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++     T   +K +  RN AIL ++Y  GLR+SE + +   ++      L+  GK
Sbjct: 116 VTRLIE-----TPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GDK RI+PL     + I  Y +     L  N   +  LF    G+PL+     + ++Q+ 
Sbjct: 171 GDKERIIPLGDYAIQWIQRYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIV 230

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R   +  + T HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT++  +     M 
Sbjct: 231 REAQIEKNITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQR----MA 286

Query: 312 EIYDQTHPSI 321
           ++Y +  P  
Sbjct: 287 DVYKEHFPRA 296


>gi|285019335|ref|YP_003377046.1| tyrosine recombinase [Xanthomonas albilineans GPE PC73]
 gi|283474553|emb|CBA17054.1| probable tyrosine recombinase protein [Xanthomonas albilineans]
          Length = 296

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 149/305 (48%), Gaps = 19/305 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L +ER +S  TL +Y  D      + A        +     L   ++R FI+   
Sbjct: 10  EFLAYLRVERRMSAHTLDAYRRDLAALTTWAADNL-----LGEPAALGAEQLRQFIAAEH 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +  +SL+R LS  +SF  +L K      S    +R  K    LP+ L+  +A+ LV+
Sbjct: 65  RRGLSPKSLQRRLSACRSFYVWLLKHGHIEASPAAALRAPKAPRKLPQVLDADEAVRLVE 124

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                       +  R+ A+L L Y  GLR+SE  +L  +++      + + GKG K R+
Sbjct: 125 VP------TDVPLGLRDRALLELFYSSGLRLSELCALRWRDLDAASGLVSVHGKGGKQRL 178

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VP+    RKA+ E+ +    D       P+F G  G P+     Q  I+QL    GL   
Sbjct: 179 VPIGSHARKALSEWREEHCADAAA----PVFPGRGGVPIGARAVQIRIKQLAARQGLFKH 234

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRHSFA+H+L + GDLR +Q +LGH  ++TTQIYT+++ ++    + ++YD  HP
Sbjct: 235 VHPHMLRHSFASHILESSGDLRGVQELLGHADIATTQIYTHLDFQH----LAKVYDAAHP 290

Query: 320 SITQK 324
              +K
Sbjct: 291 RAKRK 295


>gi|16762185|ref|NP_457802.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29143674|ref|NP_807016.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213162145|ref|ZP_03347855.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213425411|ref|ZP_03358161.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213649576|ref|ZP_03379629.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213854889|ref|ZP_03383129.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289829107|ref|ZP_06546781.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|34222945|sp|Q8Z3A8|XERC_SALTI RecName: Full=Tyrosine recombinase xerC
 gi|25299264|pir||AI0918 integrase/recombinase [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16504489|emb|CAD09371.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29139309|gb|AAO70876.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 300

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 88/315 (27%), Positives = 151/315 (47%), Gaps = 17/315 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +    L  +   +L+ L +ER LS +TLQ+Y+      +         +  +++ +Q   
Sbjct: 1   MTEVALSLDVSRFLRYLGVERQLSPITLQNYQRQLDAIIALAG-----ETGLKSWQQCDA 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R+F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ 
Sbjct: 56  AIVRSFAVRSRRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKN 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++      L+D  L         +  R+ A+L ++YG GLR+SE + L  +++  D   +
Sbjct: 116 IDVDDVNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEV 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +P+  +    I  + DL    L  + +  LF    GK ++    Q+   
Sbjct: 170 WVMGKGSKERRLPIGRNAVTWIEHWLDLRG--LFASDEEALFLSKLGKRISARNVQKRFA 227

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++   
Sbjct: 228 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 284

Query: 309 WMMEIYDQTHPSITQ 323
            +  +YD  HP   +
Sbjct: 285 -LASVYDAAHPRAKR 298


>gi|317129216|ref|YP_004095498.1| tyrosine recombinase XerC [Bacillus cellulosilyticus DSM 2522]
 gi|315474164|gb|ADU30767.1| tyrosine recombinase XerC [Bacillus cellulosilyticus DSM 2522]
          Length = 297

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 92/306 (30%), Positives = 155/306 (50%), Gaps = 16/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + ++  L++E+  S  T  +Y+ D   F  F      + + I T   +SY +IR +++ 
Sbjct: 6   IKQFITYLQLEKQASNHTTLNYKNDILDFYAFT-----KSLKISTFVDVSYNDIRDYLTV 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S+ R +S ++SF  +L + +I  E+   ++   K    LP    E++   L
Sbjct: 61  LHQKAYSRNSIARKISALRSFYSFLMREEIVKENPFQSVTTPKGGKRLPTFFFEEELAKL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            D     ++  +K +  RN+AIL LLY  G+R+SE +SL   +  +D  TL ++GKG K 
Sbjct: 121 FD-----STDTSKPLGKRNNAILELLYATGIRVSECVSLNLMDYDNDIGTLFVRGKGKKE 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R VP+     +A+ +Y +     L  N   +  LF   RG  L+    +  +  + R   
Sbjct: 176 RYVPVGSFAMEALNDYLNNGRPHLRSNQTNKDALFVNYRGGRLSDRSIRTILNNIVRDAS 235

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATH+L+ G DLR++Q +LGH RLS+TQ+YT+V      D + ++Y 
Sbjct: 236 TASRISPHVLRHTFATHMLNEGADLRTVQELLGHSRLSSTQVYTHVT----KDRLRDVYR 291

Query: 316 QTHPSI 321
             HP  
Sbjct: 292 SAHPRA 297


>gi|332881238|ref|ZP_08448888.1| tyrosine recombinase XerD [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332680614|gb|EGJ53561.1| tyrosine recombinase XerD [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 317

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 93/310 (30%), Positives = 152/310 (49%), Gaps = 17/310 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + Q L++ERGLS  TL +Y  D R+ L FL             R +S  ++  F+++
Sbjct: 20  LRRYYQYLKLERGLSGNTLDAYTEDLRKLLGFLWE------GGLDFRTVSVDDLHQFMAE 73

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                IG RS+ R LSGI+SF ++L   K   +     + + K    LP  L   +   +
Sbjct: 74  LADVGIGPRSMARILSGIRSFYRFLYVEKEIVQDPTELLESPKIGRHLPEVLTVAEIDAM 133

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +  + L           RN AIL +LY CGLR+SE   L   ++  ++  +R++GKG K 
Sbjct: 134 IAGIDLSQPE-----GQRNRAILEMLYSCGLRVSELCGLRISDLFLEEGFIRVKGKGGKE 188

Query: 198 RIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLG 255
           R+VP+     + +  +        +    +  +F  +R    L+      ++++L    G
Sbjct: 189 RLVPISGRAVRELENWFLCRNLIHIKPGNEDFVFLSLRRGASLSRITIFYWVKELAVAAG 248

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + HT RHSFATHLL  G +LR+IQ++LGH  +STT+IYT+++       +ME   
Sbjct: 249 IQKKISPHTFRHSFATHLLEGGANLRAIQAMLGHESISTTEIYTHIDRSRLRREIME--- 305

Query: 316 QTHPSITQKD 325
             HP   + D
Sbjct: 306 -HHPRNIRDD 314


>gi|152976197|ref|YP_001375714.1| site-specific tyrosine recombinase XerC [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152024949|gb|ABS22719.1| tyrosine recombinase XerC [Bacillus cytotoxicus NVH 391-98]
          Length = 299

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 156/309 (50%), Gaps = 17/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R ++
Sbjct: 5   KLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYVDVRLYL 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +K+  +S+ R +S ++S  ++L +     ++        KK  S+P+ L  ++  
Sbjct: 60  TTLHDEKLARKSVARKVSSLRSLYRFLMREGYREDNPFALASLPKKEWSIPKFLYAEELE 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L +      S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG 
Sbjct: 120 KLFE-----VSDTKTPLGQRNQALLELMYATGIRVSECVTLKLTDIDFSVGTILVMGKGK 174

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRR 252
           K R +P     + A++ Y +     L    +     +F   +G PL     +  + +L +
Sbjct: 175 KQRYIPFGSYAQDALITYIENGRKQLAKKTEEYSQMVFLNAKGVPLTDRGVRYILNELIK 234

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +     +  
Sbjct: 235 KTSLTMRISPHMLRHTFATHMLDEGSDLRAVQELLGHENLSTTQIYTHVSKER----LRS 290

Query: 313 IYDQTHPSI 321
           +Y + HP  
Sbjct: 291 VYMKHHPRA 299


>gi|323140540|ref|ZP_08075467.1| tyrosine recombinase XerC [Phascolarctobacterium sp. YIT 12067]
 gi|322414992|gb|EFY05784.1| tyrosine recombinase XerC [Phascolarctobacterium sp. YIT 12067]
          Length = 302

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 160/305 (52%), Gaps = 14/305 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  LE+E+  S+ T++SY+ D   F  F+    ++       +Q    ++R ++++ 
Sbjct: 10  ERFLTYLEVEKNCSQHTIESYQKDLAAFAEFMLRRNKQNF---FWQQTGPLDVRGYLAEL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             ++   R++ R +S ++SF KYL +  +   S +  +R  K    LP  L+E +     
Sbjct: 67  NEKQYARRTIARRISALRSFFKYLVREAVIEYSPLTKVRTPKLEKKLPAFLDEIEI---- 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            N LL    ++K +  R+ A+L +LY  G R+SE + LT + +      + + GKG+K R
Sbjct: 123 -NELLAMPDKSKVLGVRDQAVLEMLYATGCRVSELVGLTLERVDLSNRFVLLLGKGNKER 181

Query: 199 IVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           ++P+  +   A+  YY +    +         +F   RG  L     +R + +    L +
Sbjct: 182 VMPVGHTCCAALSTYYRVRQQLMLQYQQKHDFIFVNNRGGRLTDRSVRRILEKYINMLAI 241

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HT+RHSFATHLL +G DLRS+Q +LGH  LSTTQIYT+V++++  +    +Y +
Sbjct: 242 HKNVSPHTIRHSFATHLLEHGADLRSVQELLGHANLSTTQIYTHVSNEHVTN----VYKK 297

Query: 317 THPSI 321
            HP  
Sbjct: 298 NHPRA 302


>gi|307289082|ref|ZP_07569038.1| tyrosine recombinase XerD [Enterococcus faecalis TX0109]
 gi|306499791|gb|EFM69152.1| tyrosine recombinase XerD [Enterococcus faecalis TX0109]
          Length = 296

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 94/310 (30%), Positives = 165/310 (53%), Gaps = 16/310 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++  ++L  L+IERGLS  T +SYE D ++++ FL     ++  + +  ++    I  
Sbjct: 1   MEEQLVDYLHYLQIERGLSNNTRRSYERDLKKYVDFL-----QEQGLHSWDEVDRYMITE 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+     ++    S+ R +S ++ F ++L++ +++  + + ++ + KK   LP  L+  +
Sbjct: 56  FLQSLHEEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++     T   +K +  RN AIL ++Y  GLR+SE + +   ++      L+  GK
Sbjct: 116 VTRLIE-----TPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GDK RI+PL     + I  Y +     L  N   +  LF    G+PL+     + ++Q+ 
Sbjct: 171 GDKERIIPLGDYAIQWIQRYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIV 230

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R   +  + T HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT++  +     M 
Sbjct: 231 REAQIEKNITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQR----MA 286

Query: 312 EIYDQTHPSI 321
           ++Y +  P  
Sbjct: 287 DVYKEHFPRA 296


>gi|229180107|ref|ZP_04307451.1| Tyrosine recombinase xerC [Bacillus cereus 172560W]
 gi|228603316|gb|EEK60793.1| Tyrosine recombinase xerC [Bacillus cereus 172560W]
          Length = 299

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 86/309 (27%), Positives = 155/309 (50%), Gaps = 17/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q ++  L+IER  SK T+ SY+ D   F+ F+     ++  I +   ++Y ++R ++
Sbjct: 5   KLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----KREGISSFLDVTYADVRLYL 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +K+  +S+ R +S ++S  ++L +     ++        KK  S+P+ L  ++  
Sbjct: 60  TMLHDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELE 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L +      S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG 
Sbjct: 120 ELFE-----VSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGK 174

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K R +P     + +++ Y +     L          +F   +G PL     +  + +L +
Sbjct: 175 KQRYIPFGSYAQDSLITYIENGRKQLVNKTDEDSHMVFLNAKGTPLTSRGVRYVLNELIK 234

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +     +  
Sbjct: 235 KASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER----LRS 290

Query: 313 IYDQTHPSI 321
           +Y + HP  
Sbjct: 291 VYMKHHPRA 299


>gi|148252009|ref|YP_001236594.1| site-specific tyrosine recombinase XerC [Bradyrhizobium sp. BTAi1]
 gi|146404182|gb|ABQ32688.1| tyrosine recombinase XerC subunit [Bradyrhizobium sp. BTAi1]
          Length = 324

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 125/323 (38%), Positives = 187/323 (57%), Gaps = 10/323 (3%)

Query: 2   EGNNLPEIVSFE--LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
           +    P+++  +  +++    WL +L  ER LS  T+++Y  D RQ L FL  +    +T
Sbjct: 7   DAPQAPDLLGADEGVIRAMMQWLAHLRSERRLSPKTVEAYARDLRQCLQFLCTHWGGPVT 66

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           +     L   +IRAF++ RR   I  RSL R+L+G++SF ++L++        +  +R  
Sbjct: 67  LARFAALEAADIRAFMAMRRADDIAGRSLMRTLAGLRSFGRFLEREGQGKVGALAGIRAP 126

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K + SLP+ L    A  L D           W+ AR++A++ LLYG GLRISEAL L  +
Sbjct: 127 KIAKSLPKPLPMDAAKRLADADERAGETRETWVLARDAAVMALLYGSGLRISEALGLKRR 186

Query: 180 N--IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                 +   L + GKG+K R+VP+L +V + I +Y  LCP+ L    + P+F G +G P
Sbjct: 187 EVPRPGEGDVLVVTGKGNKTRMVPVLQNVLQLIDDYARLCPYPL--PAEGPMFLGAKGGP 244

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+P + Q  + +LR  LGLP S T H LRHSFATHLLS GGDLR+IQ +LGH  LSTTQ+
Sbjct: 245 LSPRIIQLAMERLRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQV 304

Query: 298 YTNVNSKNGGDWMMEIYDQTHPS 320
           YT ++S+     ++++Y   HP 
Sbjct: 305 YTGIDSER----LLQVYASAHPR 323


>gi|330936913|gb|EGH41038.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 298

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 96/304 (31%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GLS  T  SY  D   F  +L     + I+           I   ++ 
Sbjct: 9   IDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLISA------GREVILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R       RS  R LSG++ F +YL + K+ +    L +   +    LP++L+E     L
Sbjct: 63  RVENAYKPRSTARFLSGVRGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +          ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K 
Sbjct: 123 L-----AAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y        L       LF   RG  +    F   I+      G+
Sbjct: 178 RLVPMGEESIVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ +
Sbjct: 238 GKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHV----ARARLQELHAK 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|259500665|ref|ZP_05743567.1| integrase/recombinase XerD [Lactobacillus iners DSM 13335]
 gi|259168049|gb|EEW52544.1| integrase/recombinase XerD [Lactobacillus iners DSM 13335]
          Length = 297

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 95/309 (30%), Positives = 162/309 (52%), Gaps = 18/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
              +++L+  +IERGLS  TL SY  D  ++  FL     + + I T  ++    I +F 
Sbjct: 4   DSLEDYLRFAQIERGLSNNTLLSYRQDLLEYFSFL-----KSLGITTW-EVDALIIDSFF 57

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++ R +     S+ R LS ++ F ++L ++ +  +  +L + + KK   LP A++  +  
Sbjct: 58  AQERDKGKAIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPTAMSTTEVT 117

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L++         T  +  R+ AIL  LY  G+R+SE ++L   +I ++   +++ GKG 
Sbjct: 118 KLINM-----PDTTTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGS 172

Query: 196 KIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K R++P+       I +Y           +   +  +F   RG  +      + I++  +
Sbjct: 173 KQRLIPISNVAMSWIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQ 232

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+  + T HTLRH+FATHLL NG DLR +Q ILGH  +STTQIYTN+  K+    +M+
Sbjct: 233 LAGINKNVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKH----IMD 288

Query: 313 IYDQTHPSI 321
           +Y +THP I
Sbjct: 289 VYKRTHPRI 297


>gi|227112633|ref|ZP_03826289.1| site-specific tyrosine recombinase XerD [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 299

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 96/306 (31%), Positives = 156/306 (50%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L +ER L++ TL SY  D R    +LA +  + +  Q++      +++AF++ 
Sbjct: 9   IEQFLDALWLERNLAENTLASYRLDLRTLAEWLAHHDNDLLQAQSL------DLQAFLAD 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++ F +YL + K  ++     + + K    LP+ L+E Q  TL
Sbjct: 63  RVEGGYKATSSARLLSAMRRFFQYLYREKCRSDDPSAVLSSPKLPQRLPKDLSEAQVDTL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +     +     + ++ R+ A+L +LY  GLR+SE +SLT  ++   Q  +R+ GKG+K 
Sbjct: 123 L-----NAPSIEQPLELRDKAMLEVLYATGLRVSELVSLTMSDVSLRQGVVRVLGKGNKE 177

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       I  Y     P+ LN      LF   R + +    F   I+       +
Sbjct: 178 RLVPLGEEAVYWIEYYLEHGRPWLLNGQTLDVLFPSNRARQMTRQTFWHRIKHYAVLASI 237

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 238 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQ 293

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 294 QHHPRA 299


>gi|254521772|ref|ZP_05133827.1| tyrosine recombinase XerC [Stenotrophomonas sp. SKA14]
 gi|219719363|gb|EED37888.1| tyrosine recombinase XerC [Stenotrophomonas sp. SKA14]
          Length = 296

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 90/314 (28%), Positives = 155/314 (49%), Gaps = 21/314 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +   Q +LQ+L++ER +S  TL +Y  D     ++             +  L    +R F
Sbjct: 1   MSAVQAFLQHLQVERRMSAHTLDAYRRDLDALSVWAEPRGM------AVEALDAETLRQF 54

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++    + +  +SL+R LS  +SF  +L K      S    ++  +    LP+ L+  +A
Sbjct: 55  VADEHRRGLSAKSLQRRLSACRSFYAWLLKHGRIEVSPAATLKAPRAPRRLPQVLDADEA 114

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           + LV+            +  R+ A+L L Y  GLR+SE  +LT +++      + + GKG
Sbjct: 115 VQLVEL------EPEGELGRRDRALLELFYSSGLRLSEVCALTWRDLDFASGLVNVMGKG 168

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           ++ R VP     R+A+  +      +       P+F G R  P++    Q  IRQL +  
Sbjct: 169 NRQRRVPFGRPAREALQAWR----AESGGGPASPVFPG-RNGPISQRAVQIRIRQLAQRQ 223

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           GL      H LRHSFA+H+L + GDLR +Q +LGH  ++TTQIYT+++ ++    + ++Y
Sbjct: 224 GLFKHVHPHMLRHSFASHILESSGDLRGVQELLGHADIATTQIYTHLDFQH----LAKVY 279

Query: 315 DQTHPSITQKDKKN 328
           D  HP   ++ K +
Sbjct: 280 DAAHPRAKRRSKGD 293


>gi|156973275|ref|YP_001444182.1| site-specific tyrosine recombinase XerD [Vibrio harveyi ATCC
           BAA-1116]
 gi|156524869|gb|ABU69955.1| hypothetical protein VIBHAR_00956 [Vibrio harveyi ATCC BAA-1116]
          Length = 305

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 149/306 (48%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + +ERGLS+ TL SY  D  + L ++  ++        +  +S + ++ + S 
Sbjct: 15  VEQFLDAMWMERGLSENTLASYRNDLMKLLAWMEQHSYR------LDFISLSGLQEYQSY 68

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    S  R LS I+   +Y+ + K+  +     + + K    LP+ ++E+Q   L
Sbjct: 69  LVDLDYKQTSRARMLSAIRRLFQYIHREKVRADDPSALLVSPKLPQRLPKDISEEQVDAL 128

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D            ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG K 
Sbjct: 129 LD-----APDPNDPVELRDKAMLELLYATGLRVTELVSLTMENVSLRQGLVRVTGKGGKE 183

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +    I  +        L       +F   R + +    F   I+      G+
Sbjct: 184 RLVPMGENAVDWIETFIQQGRSALLGETTSDVVFPSKRARQMTRQTFWHRIKYYAVIAGI 243

Query: 257 PLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +I+ 
Sbjct: 244 DTDQLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIHS 299

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 300 QHHPRA 305


>gi|307942817|ref|ZP_07658162.1| tyrosine recombinase XerC [Roseibium sp. TrichSKD4]
 gi|307773613|gb|EFO32829.1| tyrosine recombinase XerC [Roseibium sp. TrichSKD4]
          Length = 320

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 141/313 (45%), Positives = 190/313 (60%), Gaps = 10/313 (3%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
              +L      WL +L  ER L+  TL SYE D RQFL FL  +      ++ + +L   
Sbjct: 13  AQPDLNTALGAWLDHLADERRLADKTLVSYERDVRQFLRFLTGHLGGAPCVKDLGELRPA 72

Query: 70  EIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           + R+F++KRR   K G RSL R LSG++SFL++L+KR     + I  +R  + + SLP+ 
Sbjct: 73  DYRSFLAKRRQADKAGSRSLARGLSGVRSFLRFLEKRGELNAAAIGAVRPPRIAQSLPKP 132

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ-NIMDDQST 187
           L    A  +V   L   S    WI+ RN A+L LLYGCGLRISEALSLT +     D  T
Sbjct: 133 LTVPDAEEIVSGDLGLESE--TWIETRNMAVLTLLYGCGLRISEALSLTGRTAPKGDART 190

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           +RI GKG K R+VP+LP V +AI  Y   CP+ +  N   PLF G RG  LNP + Q+ +
Sbjct: 191 MRITGKGGKERLVPMLPVVTQAIETYIAQCPYPITANG--PLFLGARGGALNPRLIQKAM 248

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            ++R  LGLP S T H LRHSFATHLL+ GGDLR+IQ ++GH  LS+TQIYT ++S +  
Sbjct: 249 EKMRSALGLPASATPHALRHSFATHLLAGGGDLRTIQELMGHASLSSTQIYTQIDSAS-- 306

Query: 308 DWMMEIYDQTHPS 320
             ++  YD++HP 
Sbjct: 307 --LLAAYDRSHPR 317


>gi|253988692|ref|YP_003040048.1| site-specific tyrosine recombinase XerD [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211637984|emb|CAR66612.1| tyrosine recombinase xerd [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780142|emb|CAQ83303.1| tyrosine recombinase xerd [Photorhabdus asymbiotica]
          Length = 303

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + +E  L++ TL SY  D +    +L  Y  + +++Q+I      ++++F+++
Sbjct: 13  IEQFLDAIWLEHDLAENTLISYRLDLQALDNWLVNYGHDLLSVQSI------DLQSFLAE 66

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++   +Y  + K+  +     +   K    LP+ L+EKQ   L
Sbjct: 67  RVDGGYKASSSARLLSAMRQLFQYFYREKMRADDPTALLSAPKLPKRLPKDLSEKQVEAL 126

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L+     + ++ R+ A+L +LY CGLR+SE + LT  ++   Q  +R+ GKG+K 
Sbjct: 127 -----LNAPCTDQPVELRDKAMLEVLYACGLRVSELVGLTLSDVSLRQGVVRVIGKGNKE 181

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       +  Y        LN      LF   RG+ +    F   I+      G+
Sbjct: 182 RLVPLGEEAIYWLENYIEYGRDGLLNGATLDVLFPSNRGRQMTRQTFWYRIKHYALLAGI 241

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  ++ 
Sbjct: 242 DTERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRLLHQ 297

Query: 316 QTHPS 320
           Q HP 
Sbjct: 298 QHHPR 302


>gi|148981819|ref|ZP_01816536.1| site-specific tyrosine recombinase XerD [Vibrionales bacterium
           SWAT-3]
 gi|145960727|gb|EDK26067.1| site-specific tyrosine recombinase XerD [Vibrionales bacterium
           SWAT-3]
          Length = 304

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 96/306 (31%), Positives = 150/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + +ERGLS+ TL SY  D  + L ++            +  +S + ++ + S 
Sbjct: 14  VEQFLDAMWMERGLSENTLVSYRTDLSKLLTWMEQNNYR------LDFISLSGLQDYQSW 67

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    S  R LS I+   +YL + K+  +     + + K    LP+ L+E+Q   L
Sbjct: 68  LVDADFKQTSRARMLSAIRRLFQYLHREKVRADDPSALLISPKLPQRLPKDLSEEQVDAL 127

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D            I+ R+ A+L LLY  GLR++E +SLT +NI   Q  +R+ GKG K 
Sbjct: 128 LD-----APDPNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGKE 182

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +    I  + +   P  L  N    +F   R K +    F   I+      G+
Sbjct: 183 RLVPMGENAVDWIESFIEQGRPQLLGENSSDVVFPSKRAKQMTRQTFWYRIKHYAVIAGI 242

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +I+ 
Sbjct: 243 DTELLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIHT 298

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 299 QHHPRA 304


>gi|225181363|ref|ZP_03734807.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
 gi|225167944|gb|EEG76751.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
          Length = 299

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 87/307 (28%), Positives = 152/307 (49%), Gaps = 19/307 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L++E+  S  T+++Y  D  QF  FL     EK      + L Y  IR F++  +
Sbjct: 7   SFLTFLQVEKNASPHTIRNYAEDLGQFFQFL-----EKEGASFPQDLDYLAIRHFLALMQ 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                 R++ R L+ I+SFL++L +     +++   +   +    LP+ L   +   L+ 
Sbjct: 62  AHGYERRTIARKLAAIRSFLRHLNREGYLADTSWTTISTPRIGKKLPKFLYVDEVFRLL- 120

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                          R+ AIL  LY  G+R+SE ++L  Q++  ++    + GKG   R+
Sbjct: 121 ----AAPDSQTPAGLRDVAILEFLYSSGVRVSELVALELQSLDLNRGQAIVMGKGGCERL 176

Query: 200 VPLLPSVRKAILEYYDLCPFDL-----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           V L    R+++L Y +    ++     + + +  L+    G  L+    +R + +  R +
Sbjct: 177 VHLGRFARRSLLAYLEQGRPEILRKNADGDREGALWLNKYGTRLSDRGVRRIVEKYVRQV 236

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            L    + H++RHSFATHLL+ G DLR +Q +LGH  +STTQIYT++      D + E+Y
Sbjct: 237 SLAKGISPHSIRHSFATHLLNAGADLRVVQELLGHVNISTTQIYTHIT----RDQLKEVY 292

Query: 315 DQTHPSI 321
           +  HP  
Sbjct: 293 NGAHPRA 299


>gi|29376101|ref|NP_815255.1| integrase/recombinase XerD, putative [Enterococcus faecalis V583]
 gi|227518728|ref|ZP_03948777.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           TX0104]
 gi|227553337|ref|ZP_03983386.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           HH22]
 gi|255975876|ref|ZP_05426462.1| phage integrase [Enterococcus faecalis T2]
 gi|256619040|ref|ZP_05475886.1| integrase [Enterococcus faecalis ATCC 4200]
 gi|256762466|ref|ZP_05503046.1| phage integrase [Enterococcus faecalis T3]
 gi|256958957|ref|ZP_05563128.1| integrase [Enterococcus faecalis DS5]
 gi|256961950|ref|ZP_05566121.1| phage integrase [Enterococcus faecalis Merz96]
 gi|256965148|ref|ZP_05569319.1| phage integrase [Enterococcus faecalis HIP11704]
 gi|257078988|ref|ZP_05573349.1| phage integrase [Enterococcus faecalis JH1]
 gi|257082573|ref|ZP_05576934.1| phage integrase [Enterococcus faecalis E1Sol]
 gi|257085206|ref|ZP_05579567.1| phage integrase [Enterococcus faecalis Fly1]
 gi|257086767|ref|ZP_05581128.1| phage integrase [Enterococcus faecalis D6]
 gi|257416070|ref|ZP_05593064.1| integrase [Enterococcus faecalis AR01/DG]
 gi|257419273|ref|ZP_05596267.1| phage integrase [Enterococcus faecalis T11]
 gi|293383018|ref|ZP_06628936.1| tyrosine recombinase XerD [Enterococcus faecalis R712]
 gi|293389493|ref|ZP_06633950.1| tyrosine recombinase XerD [Enterococcus faecalis S613]
 gi|294781340|ref|ZP_06746683.1| tyrosine recombinase XerD [Enterococcus faecalis PC1.1]
 gi|300860304|ref|ZP_07106391.1| tyrosine recombinase XerD [Enterococcus faecalis TUSoD Ef11]
 gi|307271041|ref|ZP_07552324.1| tyrosine recombinase XerD [Enterococcus faecalis TX4248]
 gi|307273248|ref|ZP_07554494.1| tyrosine recombinase XerD [Enterococcus faecalis TX0855]
 gi|307274985|ref|ZP_07556148.1| tyrosine recombinase XerD [Enterococcus faecalis TX2134]
 gi|307278097|ref|ZP_07559181.1| tyrosine recombinase XerD [Enterococcus faecalis TX0860]
 gi|312907511|ref|ZP_07766502.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 512]
 gi|312910129|ref|ZP_07768976.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 516]
 gi|29343563|gb|AAO81325.1| integrase/recombinase XerD, putative [Enterococcus faecalis V583]
 gi|227073809|gb|EEI11772.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           TX0104]
 gi|227177524|gb|EEI58496.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           HH22]
 gi|255968748|gb|EET99370.1| phage integrase [Enterococcus faecalis T2]
 gi|256598567|gb|EEU17743.1| integrase [Enterococcus faecalis ATCC 4200]
 gi|256683717|gb|EEU23412.1| phage integrase [Enterococcus faecalis T3]
 gi|256949453|gb|EEU66085.1| integrase [Enterococcus faecalis DS5]
 gi|256952446|gb|EEU69078.1| phage integrase [Enterococcus faecalis Merz96]
 gi|256955644|gb|EEU72276.1| phage integrase [Enterococcus faecalis HIP11704]
 gi|256987018|gb|EEU74320.1| phage integrase [Enterococcus faecalis JH1]
 gi|256990603|gb|EEU77905.1| phage integrase [Enterococcus faecalis E1Sol]
 gi|256993236|gb|EEU80538.1| phage integrase [Enterococcus faecalis Fly1]
 gi|256994797|gb|EEU82099.1| phage integrase [Enterococcus faecalis D6]
 gi|257157898|gb|EEU87858.1| integrase [Enterococcus faecalis ARO1/DG]
 gi|257161101|gb|EEU91061.1| phage integrase [Enterococcus faecalis T11]
 gi|291079683|gb|EFE17047.1| tyrosine recombinase XerD [Enterococcus faecalis R712]
 gi|291081110|gb|EFE18073.1| tyrosine recombinase XerD [Enterococcus faecalis S613]
 gi|294451570|gb|EFG20029.1| tyrosine recombinase XerD [Enterococcus faecalis PC1.1]
 gi|300849343|gb|EFK77093.1| tyrosine recombinase XerD [Enterococcus faecalis TUSoD Ef11]
 gi|306505494|gb|EFM74680.1| tyrosine recombinase XerD [Enterococcus faecalis TX0860]
 gi|306508433|gb|EFM77540.1| tyrosine recombinase XerD [Enterococcus faecalis TX2134]
 gi|306510233|gb|EFM79257.1| tyrosine recombinase XerD [Enterococcus faecalis TX0855]
 gi|306512539|gb|EFM81188.1| tyrosine recombinase XerD [Enterococcus faecalis TX4248]
 gi|310626539|gb|EFQ09822.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 512]
 gi|311289402|gb|EFQ67958.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 516]
 gi|315027289|gb|EFT39221.1| tyrosine recombinase XerD [Enterococcus faecalis TX2137]
 gi|315033946|gb|EFT45878.1| tyrosine recombinase XerD [Enterococcus faecalis TX0017]
 gi|315036955|gb|EFT48887.1| tyrosine recombinase XerD [Enterococcus faecalis TX0027]
 gi|315144440|gb|EFT88456.1| tyrosine recombinase XerD [Enterococcus faecalis TX2141]
 gi|315147241|gb|EFT91257.1| tyrosine recombinase XerD [Enterococcus faecalis TX4244]
 gi|315150560|gb|EFT94576.1| tyrosine recombinase XerD [Enterococcus faecalis TX0012]
 gi|315160468|gb|EFU04485.1| tyrosine recombinase XerD [Enterococcus faecalis TX0645]
 gi|315169058|gb|EFU13075.1| tyrosine recombinase XerD [Enterococcus faecalis TX1341]
 gi|315172335|gb|EFU16352.1| tyrosine recombinase XerD [Enterococcus faecalis TX1346]
 gi|315575890|gb|EFU88081.1| tyrosine recombinase XerD [Enterococcus faecalis TX0309B]
 gi|315580542|gb|EFU92733.1| tyrosine recombinase XerD [Enterococcus faecalis TX0309A]
 gi|323480700|gb|ADX80139.1| tyrosine recombinase XerD [Enterococcus faecalis 62]
          Length = 296

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 94/310 (30%), Positives = 165/310 (53%), Gaps = 16/310 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++  ++L  L+IERGLS  T +SYE D ++++ FL     ++  + +  ++    I  
Sbjct: 1   MEEQLVDYLHYLQIERGLSNNTRRSYERDLKKYVAFL-----QEQGLHSWDEVDRYMITE 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+     ++    S+ R +S ++ F ++L++ +++  + + ++ + KK   LP  L+  +
Sbjct: 56  FLQSLHEEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++     T   +K +  RN AIL ++Y  GLR+SE + +   ++      L+  GK
Sbjct: 116 VTRLIE-----TPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GDK RI+PL     + I  Y +     L  N   +  LF    G+PL+     + ++Q+ 
Sbjct: 171 GDKERIIPLGDYAIQWIERYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIV 230

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R   +  + T HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT++  +     M 
Sbjct: 231 REAQIEKNITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQR----MA 286

Query: 312 EIYDQTHPSI 321
           ++Y +  P  
Sbjct: 287 DVYKEHFPRA 296


>gi|284033002|ref|YP_003382933.1| tyrosine recombinase XerD [Kribbella flavida DSM 17836]
 gi|283812295|gb|ADB34134.1| tyrosine recombinase XerD [Kribbella flavida DSM 17836]
          Length = 313

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 89/316 (28%), Positives = 151/316 (47%), Gaps = 17/316 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ++ +    +L +L +ERGL+  TL SY  D R++  +LA        I  + +++   + 
Sbjct: 3   DIGRAVSAYLDHLTVERGLAANTLASYRRDLRRYDEYLA-----GAGISALGRVTEAVVG 57

Query: 73  AFISKRRTQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
            F+ + R        +   S  R++  ++ F K+  +  +T       ++       LP+
Sbjct: 58  DFLMRLREGDEHHPPLTASSAGRTVVAVRGFHKFCLREGLTVIDPAAAVKPPVPPQRLPK 117

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           AL+  +   ++         E   +  R++A+L  LYG G RISEA+ L   ++  +   
Sbjct: 118 ALSVDEVTRIL-AAAAGADAEPAVLATRDAALLEFLYGTGARISEAVGLDVDDVDLESGQ 176

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQR 245
           + ++GKG K R+VP+    R+A+  Y      DL         LF   RG  L+      
Sbjct: 177 VLLRGKGSKERVVPVGSYAREALSAYQVRGRPDLVARGRGTHALFLNARGGRLSRQSAWT 236

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +R+  +  G+    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQ+YT V    
Sbjct: 237 VLRRAAQRAGISKEISPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVT--- 293

Query: 306 GGDWMMEIYDQTHPSI 321
             D + E+Y  +HP  
Sbjct: 294 -VDKLREVYATSHPRA 308


>gi|330807709|ref|YP_004352171.1| Site-specific tyrosine recombinase XerD [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327375817|gb|AEA67167.1| Site-specific tyrosine recombinase XerD [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 298

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 96/304 (31%), Positives = 147/304 (48%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GLS  T  +Y  D   F  +L     E I            I   ++ 
Sbjct: 9   IDQFLDALWLEKGLSDNTRDAYRSDLALFNGWLQENHLELINA------GRELILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  Q    RS  R LSG++ F +YL + K+      L +   +    LP++L+E     L
Sbjct: 63  RLEQNYKPRSTARFLSGLRGFYRYLLREKLIAVDPTLRVEMPQLGRPLPKSLSEADVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +          ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K 
Sbjct: 123 L-----AAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y      +L        LF  +RG+ +    F   I+   +  G+
Sbjct: 178 RLVPMGEEAIVWVERYMRDARHELLGGRPSDVLFPSLRGEQMTRQTFWHRIKHQAKVAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + +++ +
Sbjct: 238 NKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHV----ARARLQDLHAK 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|149377067|ref|ZP_01894817.1| integrase/recombinase XerD [Marinobacter algicola DG893]
 gi|149358603|gb|EDM47075.1| integrase/recombinase XerD [Marinobacter algicola DG893]
          Length = 310

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 89/302 (29%), Positives = 148/302 (49%), Gaps = 14/302 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +   + +E GL + T Q+Y  D  +   +L     + +    + ++  T++ ++IS+  
Sbjct: 21  RFTDAIWLEDGLGEKTRQAYRSDLERLAAWLQEQPGKPL----LTEVRRTDLLSWISRGL 76

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           +      +  R LSG++ F +YL +  +  E   L + + +    LP +L+E     L+ 
Sbjct: 77  SDGFKTSTAARRLSGLRRFFRYLLREGVIAEDPTLRIDSPRLPRRLPDSLSEDDVENLLS 136

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                       I+ R+ A++ +LYGCGLR+SE ++LT   +   Q  +RI GKG+K R+
Sbjct: 137 E-----PDPEVPIELRDKAMMEILYGCGLRVSELVALTVDEVNLRQGVVRIVGKGNKERL 191

Query: 200 VPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VPL       ++ Y      +L        LF G R   +    F   I+      G+  
Sbjct: 192 VPLGEEAVDWLVRYMREGRGELLKGRASNALFPGNRPTAMTRQTFWHRIKHYALRAGIHK 251

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++   H
Sbjct: 252 HLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARQR----LQSLHQAHH 307

Query: 319 PS 320
           P 
Sbjct: 308 PR 309


>gi|71736133|ref|YP_273616.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556686|gb|AAZ35897.1| tyrosine recombinase XerD [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 298

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 96/304 (31%), Positives = 141/304 (46%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GLS  T  SY  D   F  +L            +       I   ++ 
Sbjct: 9   IDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERN------ADLPSAGREVILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R       RS  R LSG + F +YL + K+ +    L +   +    LP++L+E     L
Sbjct: 63  RVENAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L     ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K 
Sbjct: 123 -----LAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y        L       LF   RG  +    F   I+      G+
Sbjct: 178 RLVPMGEEAIVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ +
Sbjct: 238 GKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHV----ARARLQELHAK 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|312900737|ref|ZP_07760034.1| tyrosine recombinase XerD [Enterococcus faecalis TX0470]
 gi|295112966|emb|CBL31603.1| tyrosine recombinase XerD subunit [Enterococcus sp. 7L76]
 gi|311292218|gb|EFQ70774.1| tyrosine recombinase XerD [Enterococcus faecalis TX0470]
 gi|315169704|gb|EFU13721.1| tyrosine recombinase XerD [Enterococcus faecalis TX1342]
          Length = 296

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 93/310 (30%), Positives = 164/310 (52%), Gaps = 16/310 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++  ++L  L+IERGLS  T +SYE D ++++ FL     ++  + +  ++    I  
Sbjct: 1   MEEQLVDYLHYLQIERGLSNNTRRSYERDLKKYVAFL-----QEQGLHSWDEVDRYMITE 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+     ++    S+ R +S ++ F ++L++ +++  + + ++ + KK   LP  L+  +
Sbjct: 56  FLQSLHEEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++         +K +  RN AIL ++Y  GLR+SE + +   ++      L+  GK
Sbjct: 116 VTRLIE-----APDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GDK RI+PL     + I  Y +     L  N   +  LF    G+PL+     + ++Q+ 
Sbjct: 171 GDKERIIPLGDYAIQWIERYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIV 230

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R   +  + T HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT++  +     M 
Sbjct: 231 REAQIEKNITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQR----MA 286

Query: 312 EIYDQTHPSI 321
           ++Y +  P  
Sbjct: 287 DVYKEHFPRA 296


>gi|50119715|ref|YP_048882.1| site-specific tyrosine recombinase XerD [Pectobacterium
           atrosepticum SCRI1043]
 gi|49610241|emb|CAG73684.1| integrase/recombinase [Pectobacterium atrosepticum SCRI1043]
          Length = 299

 Score =  268 bits (685), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 95/306 (31%), Positives = 153/306 (50%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L +ER L++ TL SY  D R    +LA +  + +  Q +      +++AF++ 
Sbjct: 9   IEQFLDALWLERNLAENTLASYRLDLRSLAEWLAHHDNDLLHAQAL------DLQAFLAD 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++ F +YL + K  ++     + + K    LP+ L+E Q   L
Sbjct: 63  RIDGGYKATSSARLLSAMRRFFQYLYREKQRSDDPSAVLSSPKLPQRLPKDLSEAQVSAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D   +        ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K 
Sbjct: 123 LDAPSIEQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVLGKGNKE 177

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       I  Y     P+ LN      LF   R + +    F   I+       +
Sbjct: 178 RLVPLGEEAVYWIEYYLEHGRPWLLNGQTLDVLFPSNRARQMTRQTFWHRIKHYAVLASI 237

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 238 DSAKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQ 293

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 294 QHHPRA 299


>gi|315640591|ref|ZP_07895697.1| integrase/recombinase XerD [Enterococcus italicus DSM 15952]
 gi|315483619|gb|EFU74109.1| integrase/recombinase XerD [Enterococcus italicus DSM 15952]
          Length = 296

 Score =  268 bits (685), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 101/310 (32%), Positives = 160/310 (51%), Gaps = 16/310 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++ +++L  L IERGLS  T  SYE D +Q+  F+         I + +Q+    I A
Sbjct: 1   MYEQIEDYLHFLTIERGLSLNTRSSYERDLKQYYTFVQTKQ-----ITSWQQIDRYTILA 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+ + + +     ++ R +S ++ F ++L++ + T    + ++   KK   LP  L+ K+
Sbjct: 56  FLEQLKKENKSTATITRMISSLRRFHQFLRQERHTDHDPMQHIDTPKKVQKLPDTLSLKE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D     T    K +  R+ AIL ++Y  GLR+SE + L   +I  + + L+  GK
Sbjct: 116 VERLID-----TPDTRKILGIRDRAILEVMYATGLRVSELIQLQLSDIHLNMALLQTIGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GDK RIVPL       +  Y       L      +  LF    GK L      + ++++ 
Sbjct: 171 GDKERIVPLGDMAIHWLEVYLSDARPILVSKQPNETALFVNSHGKKLTRQGIWKNLKEIV 230

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R  G+  + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT++  K     M 
Sbjct: 231 RAAGIHKTVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR----MT 286

Query: 312 EIYDQTHPSI 321
           ++Y Q  P  
Sbjct: 287 DVYKQYFPRA 296


>gi|330959145|gb|EGH59405.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 298

 Score =  268 bits (685), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 96/304 (31%), Positives = 140/304 (46%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GLS  T  SY  D   F  +L            +       I   ++ 
Sbjct: 9   IDQFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERN------VDLPSAGREVILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R       RS  R LSG + F +YL + K+      L +   +    LP++L+E     L
Sbjct: 63  RVDNAYKPRSTARFLSGARGFYRYLLREKLIAIDPTLQIDMPQLGKPLPKSLSEADVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +          ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K 
Sbjct: 123 L-----AAPDLSEPIGQRDRAVLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y        L       LF   RG  +    F   I+      G+
Sbjct: 178 RLVPMGEEAIVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + EI+ +
Sbjct: 238 GKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHV----ARARLQEIHAK 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|330985052|gb|EGH83155.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 298

 Score =  268 bits (685), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 95/304 (31%), Positives = 141/304 (46%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GLS  T  SY  D   F  +L            +       I   ++ 
Sbjct: 9   IDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERN------VDLPSAGREVILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R       RS  R LSG + F +YL + K+ +    L +   +    LP++L+E     L
Sbjct: 63  RVENAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +          ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K 
Sbjct: 123 L-----AAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y        L       LF   RG  +    F   I+      G+
Sbjct: 178 RLVPMGEEAIVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ +
Sbjct: 238 GKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHV----ARARLQELHAK 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|28868685|ref|NP_791304.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|28851924|gb|AAO54999.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|331016306|gb|EGH96362.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 298

 Score =  268 bits (685), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 95/304 (31%), Positives = 141/304 (46%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GLS  T  SY  D   F  +L     +              I   ++ 
Sbjct: 9   IDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPGA------GREVILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R       RS  R LSG + F +YL + K+ +    L +   +    LP++L+E     L
Sbjct: 63  RVENAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +          ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K 
Sbjct: 123 L-----AAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y        L       LF   RG  +    F   I+      G+
Sbjct: 178 RLVPMGEEAIVWVERYMRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ +
Sbjct: 238 GKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHV----ARARLQEMHAK 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|227328397|ref|ZP_03832421.1| site-specific tyrosine recombinase XerD [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 299

 Score =  268 bits (685), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 94/306 (30%), Positives = 155/306 (50%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L +ER L++ TL SY  D R    ++A +    +  Q++      +++AF++ 
Sbjct: 9   IEQFLDALWLERNLAENTLASYRLDLRTLAEWVAHHENGLLQAQSL------DLQAFLAD 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++ F +YL + K+ ++     + + K    LP+ L+E Q   L
Sbjct: 63  RVEGGYKATSSARLLSAMRRFFQYLYREKLRSDDPSAVLSSPKLPQRLPKDLSEAQVDAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +     +     + ++ R+ A+L +LY  GLR+SE +SLT  ++   Q  +R+ GKG+K 
Sbjct: 123 L-----NAPSIEQPLELRDKAMLEVLYATGLRVSELVSLTMSDVSLRQGVVRVLGKGNKE 177

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       I  Y     P+ LN      LF   R + +    F   I+       +
Sbjct: 178 RLVPLGEEAVYWIEYYLEHGRPWLLNGQTLDVLFPSSRARQMTRQTFWHRIKHYAVLASI 237

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 238 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQ 293

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 294 QHHPRA 299


>gi|204930199|ref|ZP_03221176.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204320603|gb|EDZ05805.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|322613026|gb|EFY09977.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322617386|gb|EFY14286.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625622|gb|EFY22444.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627045|gb|EFY23838.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631239|gb|EFY28002.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638272|gb|EFY34971.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322642792|gb|EFY39379.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646966|gb|EFY43468.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650353|gb|EFY46766.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656356|gb|EFY52650.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657581|gb|EFY53851.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665992|gb|EFY62173.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322666731|gb|EFY62908.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671026|gb|EFY67156.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322679267|gb|EFY75319.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681671|gb|EFY77698.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686002|gb|EFY81990.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323192628|gb|EFZ77856.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323196494|gb|EFZ81644.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203754|gb|EFZ88775.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205371|gb|EFZ90345.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210740|gb|EFZ95616.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323215908|gb|EGA00641.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221401|gb|EGA05819.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323227581|gb|EGA11737.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231766|gb|EGA15877.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236181|gb|EGA20258.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239582|gb|EGA23630.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244322|gb|EGA28330.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323249581|gb|EGA33493.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250327|gb|EGA34213.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256534|gb|EGA40265.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323259768|gb|EGA43401.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323265176|gb|EGA48674.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323268395|gb|EGA51867.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 300

 Score =  268 bits (685), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 88/315 (27%), Positives = 151/315 (47%), Gaps = 17/315 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +    L  +   +L+ L +ER LS +TLQ+Y+      +         +  +++ +Q   
Sbjct: 1   MTDVALSLDVSRFLRYLGVERQLSPITLQNYQRQLDAIIALAG-----ETGLKSWQQCDA 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R+F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ 
Sbjct: 56  AIVRSFAVRSRRKGLGSASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKN 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++      L+D  L         +  R+ A+L ++YG GLR+SE + L  +++  D   +
Sbjct: 116 IDVDDVNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEV 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +P+  +    I  + DL    L  + +  LF    GK ++    Q+   
Sbjct: 170 WVMGKGSKERRLPIGRNAVTWIEHWLDLRG--LFASDEEALFLSKLGKRISARNVQKRFA 227

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++   
Sbjct: 228 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 284

Query: 309 WMMEIYDQTHPSITQ 323
            +  +YD  HP   +
Sbjct: 285 -LASVYDAAHPRAKR 298


>gi|289625892|ref|ZP_06458846.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646210|ref|ZP_06477553.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298488278|ref|ZP_07006311.1| Site-specific recombinase XerD [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157217|gb|EFH98304.1| Site-specific recombinase XerD [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330867528|gb|EGH02237.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 298

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 95/304 (31%), Positives = 141/304 (46%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GLS  T  SY  D   F  +L            +       I   ++ 
Sbjct: 9   IDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERN------VDLPSAGREVILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R       RS  R LSG + F +YL + K+ +    L +   +    LP++L+E     L
Sbjct: 63  RVENAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +          ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K 
Sbjct: 123 L-----AAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y        L       LF   RG  +    F   I+      G+
Sbjct: 178 RLVPMGEEAIVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ +
Sbjct: 238 GKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHV----ARARLQEMHAK 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|123440588|ref|YP_001004582.1| site-specific tyrosine recombinase XerC [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122087549|emb|CAL10330.1| putative integrase/recombinase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 303

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 83/313 (26%), Positives = 155/313 (49%), Gaps = 17/313 (5%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           S  L  + + +L+ L++ER LS LT+ SY    +  +        E++ +   + L   +
Sbjct: 5   STSLAPQVEAFLRYLKVERQLSPLTITSYRRQLQALMEM-----GEQMGLAHWQTLDAAQ 59

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +R+ +S+ +   +   SL   LS ++SFL +L  + +   +    +   +    LP+ ++
Sbjct: 60  VRSLVSRSKRAGLHSSSLALRLSALRSFLNWLVSQGVLQANPAKGVSTPRSGRHLPKNID 119

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             +   L+D  L         +  R+ A+L ++YG GLR+SE + +  +++      + +
Sbjct: 120 VDEVAKLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGMNCKHVDLASGEVWV 173

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG K R VP+  +  K +  + +L   +L       +F    GK ++    Q+   + 
Sbjct: 174 MGKGSKERKVPIGKTAVKWLDHWLELR--ELFEPQDDAIFLANTGKRISARNVQKRFAEW 231

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+      H LRHSFATH+L + GDLR++Q +LGH  L+TTQIYT+++ ++    +
Sbjct: 232 GVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----L 287

Query: 311 MEIYDQTHPSITQ 323
             +YD  HP   +
Sbjct: 288 ATVYDAAHPRAKR 300


>gi|330964079|gb|EGH64339.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 298

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 95/304 (31%), Positives = 140/304 (46%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GLS  T  SY  D   F  +L            +       I   ++ 
Sbjct: 9   IDQFLDTLWLEKGLSDNTRDSYRSDLALFNGWLQERN------VDLPSAGREVILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R       RS  R LSG + F +YL + K+      L +   +    LP++L+E     L
Sbjct: 63  RVDNAYKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +          ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K 
Sbjct: 123 L-----AAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y        L       LF   RG  +    F   I+      G+
Sbjct: 178 RLVPMGEEAIVWVERYMRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ +
Sbjct: 238 SKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHV----ARARLQEMHAK 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|196047758|ref|ZP_03114951.1| tyrosine recombinase XerC [Bacillus cereus 03BB108]
 gi|196021406|gb|EDX60120.1| tyrosine recombinase XerC [Bacillus cereus 03BB108]
          Length = 299

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 87/309 (28%), Positives = 155/309 (50%), Gaps = 17/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R ++
Sbjct: 5   KLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDITYADVRLYL 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +K+  +S+ R +S ++S  ++L +     ++        KK  S+P+ L  ++  
Sbjct: 60  TTLHDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELE 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L +      S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG 
Sbjct: 120 ELFE-----VSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGK 174

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K R +P     + A++ Y +     L    +     +F   +G PL     +  + +L +
Sbjct: 175 KQRYIPFGSYAQDALITYIENGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIK 234

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L +  + H LRH+FATH+L  G DLR++Q +LGH  LS TQIYT+V+ +     +  
Sbjct: 235 KASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSATQIYTHVSKER----LRS 290

Query: 313 IYDQTHPSI 321
           +Y + HP  
Sbjct: 291 VYMKHHPRA 299


>gi|9622620|gb|AAF89876.1| putative site-specific recombinase XerD [Staphylococcus aureus]
          Length = 295

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 95/304 (31%), Positives = 155/304 (50%), Gaps = 15/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+ ++IE+GLS  T+ +Y  D +++  ++  +      I  I  +    I+  +  
Sbjct: 5   IEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHH-----ISHIDFIDRQLIQECLGH 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q    +S+ R +S I+SF ++  + K   +   + + + K    LP  LN  + L L
Sbjct: 60  LIDQGQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLAL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++     T    K    R+  +L LLY  G+R+SE + L  +N+      +R+ GKGDK 
Sbjct: 120 LE-----TPDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKE 174

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVPL  +V + +  Y   + P  L   +   LF  + GKPL+     + I+Q      +
Sbjct: 175 RIVPLGDAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y  
Sbjct: 235 KKKLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IKKMYYP 290

Query: 317 THPS 320
            HP 
Sbjct: 291 FHPK 294


>gi|121602434|ref|YP_988421.1| site-specific tyrosine recombinase XerC [Bartonella bacilliformis
           KC583]
 gi|120614611|gb|ABM45212.1| tyrosine recombinase xerC [Bartonella bacilliformis KC583]
          Length = 322

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 137/322 (42%), Positives = 199/322 (61%), Gaps = 10/322 (3%)

Query: 2   EGNNLPEIVSFE-LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           +G N+  + + + +L  RQ+WL++L     ++  T+++YE DTRQFL FL  +   K T 
Sbjct: 9   KGQNISLVPADDAVLAARQSWLESLLHIHRMATRTVEAYERDTRQFLFFLCQHLGRKPTY 68

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             +  L   ++R++++ RR Q +  RSL R+++ ++SF  YL +  +        +R  K
Sbjct: 69  HDLADLQVADLRSYMAYRRKQMVSTRSLSRNMASMRSFFNYLSRENLVDVPAAKLVRTPK 128

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
            + SLP+ L  K ALT+V     +   +  WI ARN+A+L LLYGCG+RISEAL+LTP+ 
Sbjct: 129 YAKSLPKTLTMKAALTIVKQG--NQQEDEPWIAARNAAVLTLLYGCGMRISEALALTPKQ 186

Query: 181 IMDDQST-LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
             D   T L I GKG K R+VPL+ +V +++  Y   CP+ L  N   P+FRG RG PL 
Sbjct: 187 FSDPNVTSLSIVGKGGKTRLVPLIKTVYESVETYLKCCPYPLGDNQ--PMFRGARGGPLQ 244

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           P + QR ++ LR  LGLP + T H LRHSFATHLLS GG+LR IQ +LGH  LSTTQ+YT
Sbjct: 245 PAIIQRAVQNLRASLGLPKTATPHALRHSFATHLLSRGGNLRIIQELLGHASLSTTQVYT 304

Query: 300 NVNSKNGGDWMMEIYDQTHPSI 321
            ++S    D +++IY + HP  
Sbjct: 305 EIDS----DRLLDIYQKAHPRA 322


>gi|116670082|ref|YP_831015.1| tyrosine recombinase XerD [Arthrobacter sp. FB24]
 gi|116610191|gb|ABK02915.1| tyrosine recombinase XerD [Arthrobacter sp. FB24]
          Length = 346

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 84/318 (26%), Positives = 140/318 (44%), Gaps = 26/318 (8%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +   ++LQ++ +ERGL+  TL +Y  D  ++  +LA     +        ++   +  F+
Sbjct: 41  RAVNDYLQHMGVERGLAANTLSAYRRDLARYANYLAACGPSRPG-----DVTRRHVTGFV 95

Query: 76  SKRRTQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
                       +G RS  R++  ++   K+     ITT     ++        LP+A++
Sbjct: 96  QALSDGSDGGTALGVRSAARTVVAVRGLHKFWALEGITTADPASDVHPPMPGKRLPKAIS 155

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ----- 185
             +   +++      +        R+ A+L  LY  G RISEA+ L   +I         
Sbjct: 156 VDEVTRILE-----AAGTDTATGLRDRALLEFLYSTGARISEAVGLDVDDISLQADQAGP 210

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVF 243
           + +R+ GKG K R+VPL     +A+  Y       L    +    LF   RG  ++    
Sbjct: 211 AIVRLFGKGSKERLVPLGSYGARALDAYLVRGRPLLAAKGKGTPALFLNARGGRISRQSA 270

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              ++       +    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQ+YT V  
Sbjct: 271 WTILKAAADKANITKDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVT- 329

Query: 304 KNGGDWMMEIYDQTHPSI 321
               D + EIY   HP  
Sbjct: 330 ---ADTLREIYAAAHPRA 344


>gi|6648971|gb|AAF21314.1| site-specific recombinase [Staphylococcus aureus]
          Length = 293

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 95/302 (31%), Positives = 157/302 (51%), Gaps = 15/302 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+ ++IE+GLS  T+ +Y  D +++  ++  +      I  I  +    I+  +  
Sbjct: 5   IEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHH-----ISHIDFIDRQLIQECLGH 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q    +S+ R +S I+SF ++  + K   +   + + + K    LP  LN  + L L
Sbjct: 60  LIDQGQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLAL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++     T    K    R+  +L LLY  G+R+SE + L  +N+      +R+ GKGDK 
Sbjct: 120 LE-----TPDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKE 174

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVPL  +V + +  Y   + P  L   +   LF  + GKPL+     + I+Q      +
Sbjct: 175 RIVPLGDAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y+Q
Sbjct: 235 KKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYNQ 290

Query: 317 TH 318
            H
Sbjct: 291 FH 292


>gi|260062440|ref|YP_003195520.1| putative tyrosine recombinase [Robiginitalea biformata HTCC2501]
 gi|88784003|gb|EAR15174.1| putative tyrosine recombinase [Robiginitalea biformata HTCC2501]
          Length = 300

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 99/307 (32%), Positives = 153/307 (49%), Gaps = 16/307 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +   ++L  L +ERGLS+ +++SY  D R+   +LA    E     T + +   +I AFI
Sbjct: 5   EAITDYLHYLRLERGLSENSVRSYRRDVRKLAGYLA----ENEPGITPKSIDRKDIEAFI 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
               T  +  RS  R +SG+K F  YL       ++ +  +   K    LP  L+ ++  
Sbjct: 61  HHVGTD-LKARSQARLISGLKGFFGYLIFEGYRKDNPMDLIEAPKLGRKLPDTLSVEEID 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            LV  +        +     N AIL  LYGCGLR+SE L L   ++  D+  +++ GKG 
Sbjct: 120 RLVAEIDRSAPEGER-----NLAILETLYGCGLRVSELLGLRLSDLFFDEGFIKVTGKGS 174

Query: 196 KIRIVPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R VP+ P  R+ IL Y              +  +F   RG+ L+  +    IR L   
Sbjct: 175 KDRFVPIGPYNRECILRYIREVRPHQQPQAGFEDVVFLNRRGRGLSRAMIFTIIRDLAAR 234

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL  + + HT RHSFATHLL NG D+R+IQ +LGH  ++TT++Y +V+  +    + E+
Sbjct: 235 AGLRKNVSPHTFRHSFATHLLQNGADIRAIQQMLGHESITTTEVYMHVDRTH----LAEV 290

Query: 314 YDQTHPS 320
             + HP 
Sbjct: 291 VREHHPR 297


>gi|229545847|ref|ZP_04434572.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           TX1322]
 gi|256853102|ref|ZP_05558472.1| phage integrase [Enterococcus faecalis T8]
 gi|307292019|ref|ZP_07571888.1| tyrosine recombinase XerD [Enterococcus faecalis TX0411]
 gi|229309046|gb|EEN75033.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           TX1322]
 gi|256711561|gb|EEU26599.1| phage integrase [Enterococcus faecalis T8]
 gi|306497017|gb|EFM66565.1| tyrosine recombinase XerD [Enterococcus faecalis TX0411]
 gi|315029408|gb|EFT41340.1| tyrosine recombinase XerD [Enterococcus faecalis TX4000]
          Length = 296

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 94/310 (30%), Positives = 165/310 (53%), Gaps = 16/310 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++  ++L  L+IERGLS  T +SYE D ++++ FL     ++  + +  ++    I  
Sbjct: 1   MEEQLVDYLHYLQIERGLSNNTRRSYERDLKKYVAFL-----QEQGLHSWDEVDRYMITE 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+     ++    S+ R +S ++ F ++L++ +++  + + ++ + KK   LP  L+  +
Sbjct: 56  FLQSLHEEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKIQKLPSTLSVDE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++     T   +K +  RN AIL ++Y  GLR+SE + +   ++      L+  GK
Sbjct: 116 VTRLIE-----TPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GDK RI+PL     + I  Y +     L  N   +  LF    G+PL+     + ++Q+ 
Sbjct: 171 GDKERIIPLGDYAIQWIERYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIV 230

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R   +  + T HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT++  +     M 
Sbjct: 231 REAQIEKNITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQR----MA 286

Query: 312 EIYDQTHPSI 321
           ++Y +  P  
Sbjct: 287 DVYKEYFPRA 296


>gi|261419412|ref|YP_003253094.1| site-specific tyrosine recombinase XerC [Geobacillus sp. Y412MC61]
 gi|297530613|ref|YP_003671888.1| tyrosine recombinase XerC [Geobacillus sp. C56-T3]
 gi|319766227|ref|YP_004131728.1| tyrosine recombinase XerC [Geobacillus sp. Y412MC52]
 gi|261375869|gb|ACX78612.1| tyrosine recombinase XerC [Geobacillus sp. Y412MC61]
 gi|297253865|gb|ADI27311.1| tyrosine recombinase XerC [Geobacillus sp. C56-T3]
 gi|317111093|gb|ADU93585.1| tyrosine recombinase XerC [Geobacillus sp. Y412MC52]
          Length = 300

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 97/308 (31%), Positives = 154/308 (50%), Gaps = 17/308 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             Q +++ L+IE+  S+ T+  Y  D  QF  F+     ++  I  + ++SY+++R +++
Sbjct: 7   ALQLFMEYLQIEKNYSQYTIVCYRRDIEQFFRFM-----DEEGIGALNEVSYSDVRLYLT 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           K   Q++  RS+ R +S ++SF K+L +     E+        KK   +P  L  K+   
Sbjct: 62  KLYEQQLASRSVARKISSLRSFYKFLLREGRVAENPFALATLPKKEQKIPNFLYPKELEA 121

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L        + E   +  RN+A+L LLY  G R+SE   +   ++     T+ I GKG+K
Sbjct: 122 LF-----LVNDENTALGQRNAALLELLYATGARVSECCHIQLSDVDFVAETVLIHGKGNK 176

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLN---IQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            R VP     R+A+  Y      +L          LF   RG PL P   +  + ++   
Sbjct: 177 QRYVPFGRPAREALERYIHRGRRELTRKLPADHRYLFVNARGNPLTPRGVRHILDRIVEA 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L  + + H LRH+FATHLL+ G DLRS+Q +LGH  LS+TQ+YT+V      D +  I
Sbjct: 237 AALTQNISPHVLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVT----KDRLRHI 292

Query: 314 YDQTHPSI 321
           Y Q HP  
Sbjct: 293 YLQAHPRA 300


>gi|323137166|ref|ZP_08072245.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322397524|gb|EFY00047.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 336

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 126/314 (40%), Positives = 182/314 (57%), Gaps = 8/314 (2%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            + ++ +E   WLQ L  ER  S+ T+ +Y  D   FL FL  +   K     +  +   
Sbjct: 30  AAPQIAEEAALWLQALSGERRASRHTIDAYARDVGVFLRFLTEHLGAKPDAAALSAMQPA 89

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++RAF+++RR   +  RSL R+L+ +++FL++L+K+ +        +R  K+ +SLP+AL
Sbjct: 90  DLRAFLARRRNDGLESRSLLRALAAVRNFLRFLEKKGLARTDVFGAVRAPKRPHSLPKAL 149

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTL 188
               A  L+D           W+ AR++A++ LLYG GLRISEALS+   +  +     +
Sbjct: 150 TVGDARDLIDPEQRAGEAREPWVLARDAAVMALLYGVGLRISEALSIQRADAPIGRTDRV 209

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            I GKG K R +P++  VR+AI  Y  +CP+DL      PLF G RG PL+P + Q  I+
Sbjct: 210 TITGKGGKTRTLPVIEPVRRAIEAYLAICPYDLAGG---PLFVGARGGPLSPRIVQLAIQ 266

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +LR  LGLP S T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQIYT V+ K    
Sbjct: 267 RLRGALGLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQIYTAVDKKR--- 323

Query: 309 WMMEIYDQTHPSIT 322
            +++ Y   HP   
Sbjct: 324 -LLDAYRSAHPRAD 336


>gi|296105305|ref|YP_003615451.1| site-specific tyrosine recombinase XerC [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295059764|gb|ADF64502.1| site-specific tyrosine recombinase XerC [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 300

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 86/315 (27%), Positives = 151/315 (47%), Gaps = 17/315 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +    L  +   +L+ L +ER LS +TL +Y+      +        ++I +++ +Q   
Sbjct: 1   MTDALLATDVSRFLRYLGVERQLSPITLLNYQRQLDAIMQIA-----DEIGLKSWQQCDA 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R F+ + R + +   SL   LS ++SF  +L  +     +    +   K    LP+ 
Sbjct: 56  ATVRGFVVRSRKKNLSPASLALRLSALRSFFDWLVSQGGLKANPAKGIATPKAPRHLPKN 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++      L+D  L         +  R+ A+L ++YG GLR+SE ++L  +++  +   +
Sbjct: 116 IDVDDVNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVNLDLKHLDLESGEV 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +P+  +    I  + DL    L    +  LF    GK ++    Q+   
Sbjct: 170 WVMGKGSKERRLPIGRNAVSWIEHWLDLRG--LFGAEEDALFLSKLGKRISARNVQKRFA 227

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++   
Sbjct: 228 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 284

Query: 309 WMMEIYDQTHPSITQ 323
            +  +YD  HP   +
Sbjct: 285 -LASVYDAAHPRAKR 298


>gi|270291303|ref|ZP_06197525.1| tyrosine recombinase XerD [Pediococcus acidilactici 7_4]
 gi|270280149|gb|EFA25985.1| tyrosine recombinase XerD [Pediococcus acidilactici 7_4]
          Length = 295

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 145/305 (47%), Gaps = 15/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             ++L  L++ERGLS  T+ SY  + R    FL         I  I+ +    I  ++  
Sbjct: 5   INDYLHALKVERGLSDNTIVSYRQELRHLQNFLQEQH-----IADIKDVDRYTILNYLDA 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            +       S   ++S ++ F KYL        + + N+   K++  LP  L  ++   L
Sbjct: 60  LKQTGRARSSSIHTISSLRKFFKYLLLNDQIQTNPMANIDPPKRAQHLPSVLTTEEVERL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +          +K +  R+ AIL ++Y  GLR+SE ++L    +  +   +   GKG+K 
Sbjct: 120 L-----KVPDTSKPLGIRDRAILEVMYATGLRVSELIALNLNELHLEMGLIETVGKGNKQ 174

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RI+P+     + +  Y +      L       +F    G PL      + ++   +  G+
Sbjct: 175 RIIPIGDVAIQWLERYINGPRRALLGAKRYNEIFLNQHGHPLTRQGVWKNLKAQVQKAGI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + T HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT++  +     ++++YD+
Sbjct: 235 KKNITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITQQR----LVDVYDK 290

Query: 317 THPSI 321
            HP  
Sbjct: 291 YHPRA 295


>gi|310642630|ref|YP_003947388.1| phage integrase:phage integrase, n-terminal sam-like protein
           [Paenibacillus polymyxa SC2]
 gi|309247580|gb|ADO57147.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Paenibacillus polymyxa SC2]
          Length = 314

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 85/310 (27%), Positives = 146/310 (47%), Gaps = 22/310 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q ++Q +E E+GLS+ TL++Y+ D +QF  F      E   ++    +  + +  ++  
Sbjct: 5   IQPFVQYMEEEKGLSRSTLEAYQRDVQQFAEFA-----ESCGLEQPDNVQRSHLVLYLGH 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            + Q     ++ RS++ I+SF  +L +  I      + +   K +   P  L + +   L
Sbjct: 60  LKEQGKAAATISRSVASIRSFFHFLIREGIAIHDPSVLVELPKATKKKPSVLTQDEIERL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +          +     R+ A+L LLY  G+R+SE ++L   ++  D   +   G+  K 
Sbjct: 120 L-----AAPDVSAPQGGRDKAMLELLYATGIRVSELIALNVCDVRIDLRFVHCGGEAGKE 174

Query: 198 RIVPLLPSVRKAILEYYDL--------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           R+VP+     +    Y D            +     Q  LF  + G+ L+   F + I++
Sbjct: 175 RVVPISREASQWAQAYLDEQRPALLRPGQGEEAQTKQEALFLNVSGQRLSRQGFWKIIKK 234

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +  G+    T HTLRHSFA H+L  G DLRS+Q +LGH  L+TTQ+Y     +N    
Sbjct: 235 YAQEAGISKDITPHTLRHSFAVHMLEGGADLRSVQEMLGHADLATTQVYAQTARRN---- 290

Query: 310 MMEIYDQTHP 319
           M E+Y+  HP
Sbjct: 291 MKEVYEMHHP 300


>gi|304385052|ref|ZP_07367398.1| tyrosine recombinase XerD [Pediococcus acidilactici DSM 20284]
 gi|304329246|gb|EFL96466.1| tyrosine recombinase XerD [Pediococcus acidilactici DSM 20284]
          Length = 296

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 148/305 (48%), Gaps = 15/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             ++L  L++ERGLS  T+ SY  + R    FL     ++  I  I+ +    I  ++  
Sbjct: 6   INDYLHALKVERGLSDNTIVSYRQELRHLQNFL-----QEQHIADIKDVDRYTILNYLDA 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            +       S   ++S ++ F KYL        + ++N+   K++  LP  L  ++   L
Sbjct: 61  LKQTGRARSSSIHTISSLRKFFKYLLLNDQIQTNPMVNIDPPKRAQHLPSVLTTEEVERL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +          +K +  R+ AIL ++Y  GLR+SE ++L    +  +   +   GKG+K 
Sbjct: 121 L-----KVPDTSKPLGIRDRAILEVMYATGLRVSELIALNLNELHLEMGLIETVGKGNKQ 175

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RI+P+     + +  Y +      L       +F    G PL      + ++   +  G+
Sbjct: 176 RIIPIGDVAIQWLERYINGPRRALLGAKRYNEIFLNQHGHPLTRQGVWKNLKAQVQKAGI 235

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + T HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT++  +     ++++YD+
Sbjct: 236 KKNITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITQQR----LVDVYDK 291

Query: 317 THPSI 321
            HP  
Sbjct: 292 YHPRA 296


>gi|258590894|emb|CBE67189.1| Tyrosine recombinase xerC [NC10 bacterium 'Dutch sediment']
          Length = 349

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 98/336 (29%), Positives = 160/336 (47%), Gaps = 36/336 (10%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL--AFYTEEKITIQTIR------ 64
           ++L++ + +L  L+ ER  S  TL++Y  D +QF  FL     ++ + T+  +       
Sbjct: 23  QMLEQIEAYLLYLQAERAASPHTLKNYAIDLQQFRTFLRAGESSQLEPTVSAVERPVVRD 82

Query: 65  --------------QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE 110
                         ++    IRAF++    + I   S+ R L+ ++SF +YL +  +   
Sbjct: 83  TGRGDALHRQIKPGEIDVLAIRAFVADLHRRGIARSSIARKLATLRSFFRYLCREGVVAA 142

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
           +    +   K    LP  L   +   L+      +  E     AR+ AIL L Y  G+R+
Sbjct: 143 NPAKLVSTPKLPKRLPAYLTVDEVDRLL-----ASPGEQDLPGARDLAILELFYASGIRL 197

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-- 228
           SE   L  +++   +  +R++GKG K RIVP+      A+  Y D     ++ + ++   
Sbjct: 198 SELTGLDVRDVDIREGLVRVKGKGGKERIVPVGSKAIVALRRYLDRRSDLIHESKRVAPE 257

Query: 229 ---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
              LF   +G  L+     R + +     G+    T H LRHS+ATHLL  G DLR+IQ 
Sbjct: 258 SVALFLNRQGGRLSQRSIARIVLKHLNQSGVGPKITPHGLRHSYATHLLQAGADLRAIQE 317

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           +LGH RLSTTQ YT++N     D +M +YD+ HP  
Sbjct: 318 LLGHSRLSTTQRYTHLN----LDHLMAVYDKAHPRA 349


>gi|153002033|ref|YP_001367714.1| tyrosine recombinase XerD [Shewanella baltica OS185]
 gi|151366651|gb|ABS09651.1| tyrosine recombinase XerD [Shewanella baltica OS185]
          Length = 309

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 99/301 (32%), Positives = 151/301 (50%), Gaps = 16/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L   +GLS  TL +Y  D R F  + A          T+  +S  ++RA+++ R  
Sbjct: 23  FLDDLWSNKGLSDNTLSAYRTDLRHFDRYQAQQG------VTLLAVSQADVRAYLAFRVE 76

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     S  R LS ++ F  YL + K  +   +  + + K +  LP +L+E Q   L+  
Sbjct: 77  QDFARTSSARLLSSLRRFYTYLVQTKQISADPMALVESPKLTRHLPDSLSESQVDRLLSE 136

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                 +    ++ R+ A+L LLY  GLR+SE + LT + +   Q  +RI GKG K R+V
Sbjct: 137 -----PNVEDAVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLV 191

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           PL       +  Y      +L  N Q   +F   RG+ +    F   I+      G+  +
Sbjct: 192 PLGELAITEVESYMKFARQELLGNKQSDVVFPSKRGQMMTRQTFWHRIKLYALRAGIETA 251

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ Q HP
Sbjct: 252 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHV----ARARLQELHQQHHP 307

Query: 320 S 320
            
Sbjct: 308 R 308


>gi|78043995|ref|YP_360612.1| tyrosine recombinase XerC [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996110|gb|ABB15009.1| tyrosine recombinase XerC [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 297

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 93/315 (29%), Positives = 154/315 (48%), Gaps = 20/315 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +E + +L  L +ER  S  T+ +YE D   F  FL          ++   ++  +++ 
Sbjct: 1   MAEELKAFLNYLLLERNYSPNTIAAYERDILDFQEFLQG--------KSFLSVNEVDLKQ 52

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+     +    R+  R +  ++SF ++LK+     E+  L++   K   +LP  L   +
Sbjct: 53  FLVDILRKNRSRRTAARKMVALRSFYRFLKRCGFIKENPALSLEIPKIPKTLPEVLTVDE 112

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              +++     T         RN A+L L YG GLRI E   LT  ++   Q  +R+ GK
Sbjct: 113 VFKVIEGQENSTP-----TGLRNRALLELFYGAGLRIGEIAGLTLNDLDLTQGYVRVTGK 167

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G + RIVPL      ++  Y +          +  LF   +G  L     +  I Q+ + 
Sbjct: 168 GRRQRIVPLGKYALDSLKLYLEAGRPAFKPKSEK-LFLNQQGAGLTVRGIRYLISQIVKK 226

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL    T HT RHS+ATHLL  G D+R++Q +LGH RLSTT+IYT+++ +     + E+
Sbjct: 227 AGLNRKITPHTFRHSYATHLLEGGADIRAVQELLGHKRLSTTEIYTHLSKER----LREV 282

Query: 314 YDQTHPSITQKDKKN 328
           Y +THP    +++KN
Sbjct: 283 YLRTHPRS--REEKN 295


>gi|160876749|ref|YP_001556065.1| tyrosine recombinase XerD [Shewanella baltica OS195]
 gi|160862271|gb|ABX50805.1| tyrosine recombinase XerD [Shewanella baltica OS195]
          Length = 309

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 99/301 (32%), Positives = 151/301 (50%), Gaps = 16/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L   +GLS  TL +Y  D R F  + A          T+  +S  ++RA+++ R  
Sbjct: 23  FLDDLWSNKGLSDNTLSAYRTDLRHFDRYQAQQG------VTLLSVSQADVRAYLAFRVE 76

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     S  R LS ++ F  YL + K  +   +  + + K +  LP +L+E Q   L+  
Sbjct: 77  QDFARTSSARLLSSLRRFYTYLVQTKQISADPMALVESPKLTRHLPDSLSESQVDRLLSE 136

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                 +    ++ R+ A+L LLY  GLR+SE + LT + +   Q  +RI GKG K R+V
Sbjct: 137 -----PNVEDAVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLV 191

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           PL       +  Y      +L  N Q   +F   RG+ +    F   I+      G+  +
Sbjct: 192 PLGELAITEVESYMKFARQELLGNKQSDVVFPSKRGQMMTRQTFWHRIKLYALRAGIETA 251

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ Q HP
Sbjct: 252 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHV----ARARLQELHQQHHP 307

Query: 320 S 320
            
Sbjct: 308 R 308


>gi|37197590|dbj|BAC93429.1| site-specific recombinase XerD [Vibrio vulnificus YJ016]
          Length = 307

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 92/306 (30%), Positives = 149/306 (48%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + +ERGL++ TL SY  D  + L ++            +  +S + ++ + S 
Sbjct: 17  VEQFLDAMWMERGLAENTLASYRNDLMKLLQWMEANHYR------LDFISLSGLQQYQSY 70

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q     S  R LS I+   +YL + K+  +     + + K    LP+ ++E+Q   L
Sbjct: 71  LVDQDYKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQVDAL 130

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D            ++ R+ A+L LLY  GLR++E +SLT +NI   Q  +R+ GKG K 
Sbjct: 131 LD-----APDPNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKE 185

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +    I  +     P  L       +F   R + +    F   I+      G+
Sbjct: 186 RLVPMGENAIDWIETFIKQGRPALLGETSSDVVFPSKRARQMTRQTFWHRIKFYAVIAGI 245

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +I+ 
Sbjct: 246 DTDHLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIHS 301

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 302 QHHPRA 307


>gi|27363993|ref|NP_759521.1| site-specific tyrosine recombinase XerD [Vibrio vulnificus CMCP6]
 gi|161486657|ref|NP_933458.2| site-specific tyrosine recombinase XerD [Vibrio vulnificus YJ016]
 gi|320157372|ref|YP_004189751.1| tyrosine recombinase XerD [Vibrio vulnificus MO6-24/O]
 gi|34222790|sp|Q7ZAJ0|XERD_VIBVU RecName: Full=Tyrosine recombinase xerD
 gi|71153415|sp|Q7MNQ0|XERD_VIBVY RecName: Full=Tyrosine recombinase xerD
 gi|27360110|gb|AAO09048.1| tyrosine recombinase XerD [Vibrio vulnificus CMCP6]
 gi|319932684|gb|ADV87548.1| tyrosine recombinase XerD [Vibrio vulnificus MO6-24/O]
          Length = 305

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 92/306 (30%), Positives = 149/306 (48%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + +ERGL++ TL SY  D  + L ++            +  +S + ++ + S 
Sbjct: 15  VEQFLDAMWMERGLAENTLASYRNDLMKLLQWMEANHYR------LDFISLSGLQQYQSY 68

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q     S  R LS I+   +YL + K+  +     + + K    LP+ ++E+Q   L
Sbjct: 69  LVDQDYKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQVDAL 128

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D            ++ R+ A+L LLY  GLR++E +SLT +NI   Q  +R+ GKG K 
Sbjct: 129 LD-----APDPNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKE 183

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +    I  +     P  L       +F   R + +    F   I+      G+
Sbjct: 184 RLVPMGENAIDWIETFIKQGRPALLGETSSDVVFPSKRARQMTRQTFWHRIKFYAVIAGI 243

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +I+ 
Sbjct: 244 DTDHLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIHS 299

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 300 QHHPRA 305


>gi|197285863|ref|YP_002151735.1| tyrosine recombinase [Proteus mirabilis HI4320]
 gi|227356364|ref|ZP_03840752.1| tyrosine recombinase [Proteus mirabilis ATCC 29906]
 gi|34222762|sp|O31206|XERD_PROMI RecName: Full=Tyrosine recombinase xerD
 gi|2645800|gb|AAB87499.1| site-specific recombinase [Proteus mirabilis]
 gi|194683350|emb|CAR44057.1| tyrosine recombinase [Proteus mirabilis HI4320]
 gi|227163474|gb|EEI48395.1| tyrosine recombinase [Proteus mirabilis ATCC 29906]
          Length = 313

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 154/305 (50%), Gaps = 17/305 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L ++ +E+GLS  TL +Y  D +    +L       +++ T+      ++ AF++ 
Sbjct: 23  IEQFLDSIWLEQGLSANTLSAYRLDLQALSQWLVTQKLNWLSVTTL------DLHAFLAT 76

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  +     S  R LS ++ F +YL + K+  +     +   K    LP+ L+E+Q   L
Sbjct: 77  RLDEGYKATSAARLLSTLRRFFQYLYREKLRQDDPSALLSTPKLPKRLPKDLSEQQVENL 136

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +           + I+ R+ A+L +LY CGLR+SE + L+  +I   Q  LR+ GKGDK 
Sbjct: 137 L-----SAPCIDEPIELRDKAMLEVLYACGLRVSELVGLSLSDISLRQGVLRVIGKGDKE 191

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       + +Y     P  +       +F  +RG+ +    F   I+      G+
Sbjct: 192 RLVPLGEEAIYWLEQYLQYGRPALMQGKTDDIVFPSLRGQKMTRQTFWHRIKHYAVIAGI 251

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  ++ 
Sbjct: 252 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKVLHQ 307

Query: 316 QTHPS 320
           Q HP 
Sbjct: 308 QHHPR 312


>gi|56415803|ref|YP_152878.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197364733|ref|YP_002144370.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56130060|gb|AAV79566.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197096210|emb|CAR61807.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 300

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 87/315 (27%), Positives = 151/315 (47%), Gaps = 17/315 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +    L  +   +L+ L++ER LS +TL +Y+      +         +  +++ +Q   
Sbjct: 1   MTDVALSLDVSRFLRYLDVERQLSPITLLNYQRQLDAIIALAG-----ETGLKSWQQCDA 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R+F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ 
Sbjct: 56  AIVRSFAVRSRRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKN 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++      L+D  L         +  R+ A+L ++YG GLR+SE + L  +++  D   +
Sbjct: 116 IDVDDVNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEV 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +P+  +    I  + DL    L  + +  LF    GK ++    Q+   
Sbjct: 170 WVMGKGSKERRLPIGRNAVTWIEHWLDLRG--LFASDEEALFLSKLGKRISARNVQKRFA 227

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++   
Sbjct: 228 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 284

Query: 309 WMMEIYDQTHPSITQ 323
            +  +YD  HP   +
Sbjct: 285 -LASVYDAAHPRAKR 298


>gi|220917980|ref|YP_002493284.1| tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955834|gb|ACL66218.1| tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 343

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 96/315 (30%), Positives = 143/315 (45%), Gaps = 19/315 (6%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
            +  E+ +E + +   L  E+  S  T ++Y+ D  Q+  +LA         Q +   S 
Sbjct: 7   ALPPEVPEEIRRFDAYLASEKRASPHTRKAYQVDLAQYAAYLADQG------QPLVPSSP 60

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R F++ R+    G  SL R LS ++S  ++L +  +   +    + + K+   LP  
Sbjct: 61  ALVRGFLA-RQAGAAGAVSLGRKLSALRSLYRFLVREGLAPGNPARAVASPKRPKRLPEV 119

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L E++   LV+     T      +  R+ A L LLYG GLR+SE   L  +++      +
Sbjct: 120 LPEEEVAALVETPDAATEA---PLALRDRAFLELLYGSGLRVSELTGLDLEDLDLAGGLV 176

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-----LPLFRGIRGKPLNPGVF 243
           R+ GK +K RIVP       A+  Y D     L            +F   RG  L     
Sbjct: 177 RVLGKRNKERIVPFGAPAADALRRYLDGARPVLAAGPDHARAGDAVFLNFRGGRLTSRSV 236

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            R +       GLP     H LRH FATHLL NG DLR IQ +LGH  LSTTQ YT+++ 
Sbjct: 237 ARRLDGWVLASGLPRHVHPHVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTHLDW 296

Query: 304 KNGGDWMMEIYDQTH 318
           K     +  +YD  H
Sbjct: 297 KR----LAAVYDAAH 307


>gi|123443576|ref|YP_001007549.1| site-specific tyrosine recombinase XerD [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122090537|emb|CAL13406.1| integrase/recombinase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 299

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 150/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L +ER L++ TL SY  D      +L  +         + +    ++++F+++
Sbjct: 9   IEQFLDALWLERNLAENTLASYRLDLHALSGWLEHHD------SDLLRAGSQDLQSFLAE 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q   L
Sbjct: 63  RIEGGYKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +     ++ +    ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K 
Sbjct: 123 L-----NSPNVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKE 177

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       I  Y     P+ +N      LF   R + +    F   I+      G+
Sbjct: 178 RLVPLGEEAVYWIENYMEHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGI 237

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  ++ 
Sbjct: 238 DSERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKLLHQ 293

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 294 QHHPRA 299


>gi|229550039|ref|ZP_04438764.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           ATCC 29200]
 gi|255972820|ref|ZP_05423406.1| phage integrase [Enterococcus faecalis T1]
 gi|257089862|ref|ZP_05584223.1| phage integrase [Enterococcus faecalis CH188]
 gi|257422642|ref|ZP_05599632.1| phage integrase [Enterococcus faecalis X98]
 gi|312951470|ref|ZP_07770366.1| tyrosine recombinase XerD [Enterococcus faecalis TX0102]
 gi|229304845|gb|EEN70841.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           ATCC 29200]
 gi|255963838|gb|EET96314.1| phage integrase [Enterococcus faecalis T1]
 gi|256998674|gb|EEU85194.1| phage integrase [Enterococcus faecalis CH188]
 gi|257164466|gb|EEU94426.1| phage integrase [Enterococcus faecalis X98]
 gi|310630436|gb|EFQ13719.1| tyrosine recombinase XerD [Enterococcus faecalis TX0102]
 gi|315152507|gb|EFT96523.1| tyrosine recombinase XerD [Enterococcus faecalis TX0031]
 gi|315155785|gb|EFT99801.1| tyrosine recombinase XerD [Enterococcus faecalis TX0043]
 gi|315158048|gb|EFU02065.1| tyrosine recombinase XerD [Enterococcus faecalis TX0312]
 gi|315577730|gb|EFU89921.1| tyrosine recombinase XerD [Enterococcus faecalis TX0630]
 gi|327535109|gb|AEA93943.1| tyrosine recombinase XerD [Enterococcus faecalis OG1RF]
          Length = 296

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 94/310 (30%), Positives = 165/310 (53%), Gaps = 16/310 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++  ++L  L+IERGLS  T +SYE D ++++ FL     ++  + +  ++    I  
Sbjct: 1   MEEQLVDYLHYLQIERGLSNNTRRSYERDLKKYVAFL-----QEQGLHSWDEVDRYMITE 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+     ++    S+ R +S ++ F ++L++ +++  + + ++ + KK   LP  L+  +
Sbjct: 56  FLQSLHEEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++     T   +K +  RN AIL ++Y  GLR+SE + +   ++      L+  GK
Sbjct: 116 VTRLIE-----TPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GDK RI+PL     + I  Y +     L  N   +  LF    G+PL+     + ++Q+ 
Sbjct: 171 GDKERIIPLGDYAIQWIERYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIV 230

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R   +  + T HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT++  +     M 
Sbjct: 231 REARIEKNITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQR----MA 286

Query: 312 EIYDQTHPSI 321
           ++Y +  P  
Sbjct: 287 DVYKEHFPRA 296


>gi|217967855|ref|YP_002353361.1| tyrosine recombinase XerD [Dictyoglomus turgidum DSM 6724]
 gi|217336954|gb|ACK42747.1| tyrosine recombinase XerD [Dictyoglomus turgidum DSM 6724]
          Length = 296

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 97/313 (30%), Positives = 158/313 (50%), Gaps = 17/313 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + +++L  L+ E+ +S  T+ SY  D   F+IFL    +EK+ I+ ++     E + 
Sbjct: 1   MKDKLEDFLFYLKFEKNMSPNTIDSYRRDLEDFIIFLQ---KEKVNIKNLK---REEWQR 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++     +    +S+ R +S I+SFLK+L +      +    M   K    LP  L+ K+
Sbjct: 55  YLVSLYNR-YKIKSIARKISSIRSFLKFLLREGYINRNYSSFMIIPKIPMYLPEILDNKE 113

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                    L        +  RN AIL   Y  G+R+SE ++L  Q+I  ++  +R  GK
Sbjct: 114 IENF-----LKIPDPLSPLGIRNIAILETFYATGMRVSELVNLDVQSINLEEKYVRCFGK 168

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GDK RI+PL     +++ +Y  +     N   +  LF   +G+ +        I+   + 
Sbjct: 169 GDKERIIPLGDYAVESLKKYLLVRD-SFNPKDEKALFLNKKGERITRQGVWFIIKTYSKI 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           LGLP   + HT RHSFATHLLSNG D+R +Q +LGH  ++TTQIYT++        + E+
Sbjct: 228 LGLPKKVSPHTFRHSFATHLLSNGADIRIVQELLGHSDVATTQIYTHI----VSSKLHEV 283

Query: 314 YDQTHPSITQKDK 326
           Y + HP   + DK
Sbjct: 284 YQKAHPLTRRNDK 296


>gi|126728166|ref|ZP_01743982.1| site-specific tyrosine recombinase XerC [Sagittula stellata E-37]
 gi|126711131|gb|EBA10181.1| site-specific tyrosine recombinase XerC [Sagittula stellata E-37]
          Length = 308

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 129/312 (41%), Positives = 188/312 (60%), Gaps = 9/312 (2%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S        +WL + +  R  S  T+ +Y  D   F+ FL  +  E   +  + +++ +
Sbjct: 5   ISPAARTALADWLDHAKALREASDNTITAYRADVIDFIAFLTQHHAEPQGLAPLARVTTS 64

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++RA+++  R  +IG RS+ R LS +K+F ++L  R+    + +L  R  K    LPR L
Sbjct: 65  DMRAWMAHLRRTEIGPRSMARKLSAVKTFYRWLADREGFEPTAVLATRAPKFQKKLPRPL 124

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +E+ A  ++D V + ++  T W  AR++A++ LLYGCGLRISEALSLT +++    S LR
Sbjct: 125 SEEAARAMIDTVEIQST--TSWQGARDAAVVTLLYGCGLRISEALSLTGRHLPLTDS-LR 181

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           I GKG+K R+VP+LP  R+A+  Y  LCPF    ++   LFRG RG PLNP +  +   Q
Sbjct: 182 IVGKGNKERVVPVLPVARRAVETYLSLCPFPPERDV--ALFRGARGGPLNPRLIAKVTEQ 239

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            R  LGLP + T H +RHSFATHLL  GGDLR+IQ +LGH  LSTTQ YT V+  +    
Sbjct: 240 ARMQLGLPATATPHAMRHSFATHLLHAGGDLRAIQELLGHASLSTTQAYTAVDQVH---- 295

Query: 310 MMEIYDQTHPSI 321
           +M+IYD  HP  
Sbjct: 296 LMKIYDACHPKA 307


>gi|110598394|ref|ZP_01386667.1| Tyrosine recombinase XerD [Chlorobium ferrooxidans DSM 13031]
 gi|110340003|gb|EAT58505.1| Tyrosine recombinase XerD [Chlorobium ferrooxidans DSM 13031]
          Length = 304

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 96/304 (31%), Positives = 157/304 (51%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L  + IER  S+ T  SY  D  ++L+F+           ++  ++  +IR FI++
Sbjct: 12  LESFLNYMLIERNFSENTRVSYRNDLERYLLFMQQ------NAISLESITPNQIREFITE 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +   SL R++S I+S  K+L   + T+ +   N+   K++  LP  L   + L L
Sbjct: 66  LYLTGLEASSLARNISAIRSLHKFLLSERTTSINPAENLHQPKQARYLPTVLTIDETLRL 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++  LL       ++  R+  I+ LLY  G+R+SE +S+  QN+  +   +RI GKG K 
Sbjct: 126 LEAPLLQNPQSKYFL--RDKTIVELLYATGVRVSELISIQQQNLYLEAGFVRIFGKGSKE 183

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +  + I  Y   L       N    LF   RGKPL+       +RQ     G+
Sbjct: 184 RLVPVGSAATEWITRYQRELRQGLSGRNSGDYLFLNARGKPLSRMAIFSMVRQYAIIAGI 243

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HT RH+FATHLL  G DLR++Q +LGH  +STTQIYT+++      ++ E++  
Sbjct: 244 EKQISPHTFRHTFATHLLEGGADLRAVQEMLGHSSISTTQIYTHID----RSFVKEVHKT 299

Query: 317 THPS 320
            HP 
Sbjct: 300 FHPR 303


>gi|183982521|ref|YP_001850812.1| integrase/recombinase, XerD [Mycobacterium marinum M]
 gi|183175847|gb|ACC40957.1| integrase/recombinase, XerD [Mycobacterium marinum M]
          Length = 313

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 89/323 (27%), Positives = 145/323 (44%), Gaps = 19/323 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + +  L  + Q +L +L IERG++  TL SY  D R++   L     E   I  + ++  
Sbjct: 1   MSTLTLDTQLQGYLDHLAIERGVAANTLSSYRRDLRRYSKHL-----EDRGITDLAKVGE 55

Query: 69  TEIRAFISKRRTQ-------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            ++  F+   R          +   S  R+L  ++   ++     +        +R    
Sbjct: 56  DDVSEFLVALRRGDPESGVLGLSAVSAARALIAVRGLHRFAAAEGLAALDVARAVRPPTP 115

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              LP++L   + L L++        +   +  RN A+L LLY  G RISEA+ L   +I
Sbjct: 116 GRRLPKSLTIDEVLALLEGAGGDNPADG-PLTLRNRALLELLYSTGSRISEAVGLDVDDI 174

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLN 239
                T+ +QGKG K R+VP+     +A+  Y      +L    +    +F   RG  L+
Sbjct: 175 DTQARTVLLQGKGGKQRLVPVGRPAVQALDAYLVRGRPELARRGRGTPAIFLNARGGRLS 234

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                + ++      G+    + H LRHSFATHLL  G D+R +Q +LGH  ++TTQIYT
Sbjct: 235 RQSAWQVLQDAAERAGITSGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 294

Query: 300 NVNSKNGGDWMMEIYDQTHPSIT 322
            V        + E++   HP  T
Sbjct: 295 LVT----VHALREVWAGAHPRAT 313


>gi|157159369|ref|YP_001465295.1| site-specific tyrosine recombinase XerC [Escherichia coli E24377A]
 gi|218556374|ref|YP_002389288.1| site-specific tyrosine recombinase XerC [Escherichia coli IAI1]
 gi|300923315|ref|ZP_07139363.1| tyrosine recombinase XerC [Escherichia coli MS 182-1]
 gi|301328427|ref|ZP_07221508.1| tyrosine recombinase XerC [Escherichia coli MS 78-1]
 gi|166918883|sp|A7ZU16|XERC_ECO24 RecName: Full=Tyrosine recombinase xerC
 gi|254799337|sp|B7M613|XERC_ECO8A RecName: Full=Tyrosine recombinase xerC
 gi|157081399|gb|ABV21107.1| tyrosine recombinase XerC [Escherichia coli E24377A]
 gi|218363143|emb|CAR00784.1| site-specific tyrosine recombinase [Escherichia coli IAI1]
 gi|300420401|gb|EFK03712.1| tyrosine recombinase XerC [Escherichia coli MS 182-1]
 gi|300845137|gb|EFK72897.1| tyrosine recombinase XerC [Escherichia coli MS 78-1]
          Length = 298

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 89/311 (28%), Positives = 153/311 (49%), Gaps = 17/311 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+      + F +     +  +Q+ +Q   T +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFAS-----ENGLQSWQQCDVTVVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHPSITQ 323
           +YD  HP   +
Sbjct: 286 VYDAAHPRAKR 296


>gi|119503715|ref|ZP_01625797.1| site-specific tyrosine recombinase XerC [marine gamma
           proteobacterium HTCC2080]
 gi|119460223|gb|EAW41316.1| site-specific tyrosine recombinase XerC [marine gamma
           proteobacterium HTCC2080]
          Length = 304

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 91/307 (29%), Positives = 165/307 (53%), Gaps = 16/307 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L      R +S+ TL+ Y  D R+F+ F A   ++  T      +  +++R ++S+   
Sbjct: 12  FLAYQRDIRQVSRHTLEGYGRDIRRFVSFCAVSNKQSAT-----SVRESDVRNWVSQLHR 66

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q +   S++R+LS ++S  ++L +R +T  +  L ++  K+  +LP+ L+      L   
Sbjct: 67  QGLSPTSIQRALSSVRSLYRFLSERDVTLGNPALGVQAPKRPRNLPKTLDADSVNHLFQW 126

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                      +D R+ AI  LLY  GLR+SE +S    ++  ++  + + GKG K R +
Sbjct: 127 ------QPETTLDFRDMAIAELLYSSGLRLSELVSANINDLEFNERMITVTGKGRKTRTL 180

Query: 201 PLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+      A+ ++  L P  + ++    PLF   RG  ++P   Q  ++++ R+  LP  
Sbjct: 181 PVGGPALTAVTKWLSLRPLGNEDVGPASPLFVSARGTRISPRSVQLRLQRMARFSALPGK 240

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRHSFA+H+L + GDLR++Q +LGH  +STTQIYT+++ ++    + ++YD  HP
Sbjct: 241 LHPHMLRHSFASHMLESSGDLRAVQELLGHSDISTTQIYTHLDFQH----LSKVYDAAHP 296

Query: 320 SITQKDK 326
              +K+K
Sbjct: 297 RARRKNK 303


>gi|258511717|ref|YP_003185151.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478443|gb|ACV58762.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 294

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 89/309 (28%), Positives = 148/309 (47%), Gaps = 16/309 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + + +L +L +ERGLS+ T  SY  D   F  +LA         +T+R    T +  
Sbjct: 1   MDPDIRTFLDHLRLERGLSENTATSYARDLADFSQYLAREQ------RTMRDADRTAVLR 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++S  + + +   ++ R +S ++SF +YL +  +       N+        LPR ++E+ 
Sbjct: 55  YLSDLKRRGMKSTTIARRMSALRSFFRYLLREGVLQADPTANIEVAAPDEHLPRVVSEED 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+             +  R+ A+L  LY  G+R+SE L+L+ +++      +R+ GK
Sbjct: 115 VERLI-----GAVRRPDAMGLRDRAMLETLYATGVRVSELLALSLEDVELAAGFIRVFGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K R+VPL    + A+  Y     P  +    +  +F    G+ +    F   ++   R
Sbjct: 170 GKKERVVPLGEIAQDALGLYLRYGRPLLVRDRGESAVFLNRLGRRMTRQGFWNILKGYAR 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    T HTLRHSFATHLL  G DLR +Q +LGH  +STT+ YT+V        + E
Sbjct: 230 QAGVSAEVTPHTLRHSFATHLLEGGADLRVVQELLGHADISTTERYTHVTP----HRLRE 285

Query: 313 IYDQTHPSI 321
           +Y   HP  
Sbjct: 286 VYRNAHPRA 294


>gi|330872807|gb|EGH06956.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 298

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 96/304 (31%), Positives = 140/304 (46%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GLS  T  SY  D   F  +L            +       I   ++ 
Sbjct: 9   IDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERN------VDLPSAGREVILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R       RS  R LSG + F +YL + K+      L +   +    LP++L+E     L
Sbjct: 63  RVDNAYKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L     ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K 
Sbjct: 123 -----LAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y        L       LF   RG  +    F   I+      G+
Sbjct: 178 RLVPMGEEAIVWVERYMRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ +
Sbjct: 238 GKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHV----ARARLQEMHAK 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|220904240|ref|YP_002479552.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868539|gb|ACL48874.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 373

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 102/315 (32%), Positives = 165/315 (52%), Gaps = 16/315 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + +++G S+ T ++Y  D  Q   FL     ++I +   + ++   ++AF++ 
Sbjct: 67  IEAFLAWMTVQKGASEATRKAYAVDLAQLAEFLR---GQEIDLGQPQTVTRRHMQAFLAW 123

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S+ R L+  +SF ++  +     E+    +RN ++    PRALN  +   L
Sbjct: 124 LFRKGEAKSSMARKLAAARSFFRFQMRGGKVAENVAAQVRNPRQEKRHPRALNVDETFAL 183

Query: 138 VDNV--------LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +D+          +  S E + I  R+ A+  LLYG GLRISEALSL   ++      LR
Sbjct: 184 LDSATGPGGKRGPVAGSAEEERILCRDLALAELLYGSGLRISEALSLDVDDVQLSSRVLR 243

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG + R+ PL  +    +  + +  P  L L  +  LF G RG  LN     R + +
Sbjct: 244 VMGKGSRERLAPLSDTSFSCLKAWLEERPL-LALPDEAALFVGARGARLNRREAARIVER 302

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           L R  GL  + + H+LRHSFATHLL  G D+RS+Q +LGH RL+TTQ YT V+ ++    
Sbjct: 303 LCRRAGLTFTVSPHSLRHSFATHLLEAGADMRSVQELLGHQRLTTTQRYTQVSLES---- 358

Query: 310 MMEIYDQTHPSITQK 324
           +M+ YDQ HP   ++
Sbjct: 359 LMQTYDQAHPRSGKR 373


>gi|24372537|ref|NP_716579.1| integrase/recombinase XerD [Shewanella oneidensis MR-1]
 gi|34222794|sp|Q7ZAJ8|XERD_SHEON RecName: Full=Tyrosine recombinase xerD
 gi|24346549|gb|AAN54024.1|AE015540_4 integrase/recombinase XerD [Shewanella oneidensis MR-1]
          Length = 300

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 97/304 (31%), Positives = 150/304 (49%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L +L   +GLS  TL +Y  D R F  +L            +R +   ++RA+++ 
Sbjct: 11  IDAFLDDLWSSKGLSDNTLSAYRTDLRHFDRYLQSQGLR------LRDVGQADVRAYLAY 64

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  Q+    S  R LS ++ F  YL + K  +   +  + + K S  LP +L+E Q   L
Sbjct: 65  RVEQQFARTSSARLLSSLRRFYNYLLQTKQISGDPMAQIESPKLSRHLPDSLSESQVDRL 124

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +        +    ++ R+ A+L LLY  GLR+SE + LT + +   Q  +RI GKG K 
Sbjct: 125 L-----AEPNVDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIIGKGGKE 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y      +L  +IQ   +F   R + +    F   I+      G+
Sbjct: 180 RLVPMGEMAITEVEHYLTSARHELLGHIQSDVVFPSKRSQMMTRQTFWHRIKLYASRAGI 239

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ Q
Sbjct: 240 ETELSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHV----ARARLQELHQQ 295

Query: 317 THPS 320
            HP 
Sbjct: 296 HHPR 299


>gi|291618684|ref|YP_003521426.1| XerD [Pantoea ananatis LMG 20103]
 gi|291153714|gb|ADD78298.1| XerD [Pantoea ananatis LMG 20103]
          Length = 297

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 95/305 (31%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L IER L++ TL SY  D +    +LA +        T+  LS  +++ F+++R
Sbjct: 8   EQFLDALWIERNLAQNTLSSYRQDLQTLTGWLAHHG------LTLTTLSAPDLQQFLAER 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K+ T+     +   K    LP+ L+E Q   L+
Sbjct: 62  LEGGYKASSSARLLSAMRRLFQYLYREKMRTDDPSAMLAAPKLPQRLPKDLSEAQVDRLL 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                        ++ R+ A+L LLY  GLR+SE + LT  ++   Q  +R+ GKG+K R
Sbjct: 122 -----QAPDVNVPLELRDKAMLELLYATGLRVSELVGLTLNDVSLRQGVVRVIGKGNKER 176

Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       +  Y     P+ LN       F   R + +    F   I+      G+ 
Sbjct: 177 LVPLGEEAVHWLEYYMEHGRPWLLNGQTLDVFFPSNRAQQMTRQTFWHRIKHYAMLAGID 236

Query: 258 -LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  ++ Q
Sbjct: 237 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRLLHQQ 292

Query: 317 THPSI 321
            HP  
Sbjct: 293 HHPRA 297


>gi|284923919|emb|CBG37018.1| tyrosine recombinase [Escherichia coli 042]
 gi|320176053|gb|EFW51122.1| Tyrosine recombinase XerC [Shigella dysenteriae CDC 74-1112]
          Length = 298

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 89/311 (28%), Positives = 154/311 (49%), Gaps = 17/311 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+      + F +     +  +Q+ +Q   T +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFAS-----ENGLQSWQQCDVTMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  SFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHPSITQ 323
           +YD  HP   +
Sbjct: 286 VYDAAHPRAKR 296


>gi|292487142|ref|YP_003530012.1| tyrosine recombinase xerD [Erwinia amylovora CFBP1430]
 gi|292900477|ref|YP_003539846.1| integrase/recombinase [Erwinia amylovora ATCC 49946]
 gi|291200325|emb|CBJ47453.1| integrase/recombinase [Erwinia amylovora ATCC 49946]
 gi|291552559|emb|CBA19604.1| Tyrosine recombinase xerD [Erwinia amylovora CFBP1430]
 gi|312171246|emb|CBX79505.1| Tyrosine recombinase xerD [Erwinia amylovora ATCC BAA-2158]
          Length = 297

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 94/306 (30%), Positives = 150/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L IER L++ T+ SY  D R    +LA          ++  +    ++ F+++
Sbjct: 7   IEQFLDALWIERNLAQNTVDSYRLDLRSLGDWLAHQQ------LSLLNVEVANLQEFLAQ 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q   L
Sbjct: 61  RLEGGYKASSSARLLSAMRRLFQYLYREKLRDDDPSALLSSPKLPQRLPKDLSEAQVERL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +    L        I+ R+ A+L LLY  GLR++E + LT  +I   Q  +R+ GKG+K 
Sbjct: 121 LQAPCLDLP-----IELRDKAMLELLYATGLRVTELVGLTLSDISLRQGVVRVMGKGNKE 175

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       I ++     P+ LN      LF   R K +    F   I+      G+
Sbjct: 176 RLVPMGEEAVHWIEQFIEYGRPWLLNGQTIDVLFPSNRAKQMTRQTFWHRIKHYATLAGI 235

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 236 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 291

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 292 QHHPRA 297


>gi|291457670|ref|ZP_06597060.1| tyrosine recombinase XerD [Bifidobacterium breve DSM 20213]
 gi|291380723|gb|EFE88241.1| tyrosine recombinase XerD [Bifidobacterium breve DSM 20213]
          Length = 309

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 84/311 (27%), Positives = 150/311 (48%), Gaps = 17/311 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           R+ +L ++ IERGL+K T+ +YE D  +++ +L  +      I     ++  ++  +I+ 
Sbjct: 10  REQFLVHIGIERGLAKATVSAYESDLNKYVAWLQTH-----GITKPDDIAKQDVEDYIAA 64

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                   RS  R L+ I  F ++   +   +     +++  K ++ LP  L+  +   L
Sbjct: 65  LDADGESARSKARRLASIHEFHRFALAQHAVSADVAASVKAPKGASVLPDVLSVDEVSRL 124

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D         T  +  R+ A+L  +Y  G R+SEA+     +I  ++  +R+ GKG K 
Sbjct: 125 LDA--AAVGGSTDPVVLRDKALLEFMYATGCRVSEAVGTNLDDIDLEEKVVRLMGKGSKQ 182

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNI------QLPLFRGIRGKPLNPGVFQRYIRQLR 251
           R+VPL    R +++ Y +    +L          +  LF   RGK ++       ++   
Sbjct: 183 RLVPLGSYARNSVVAYLNAGRGELERRSTAKVPERRALFLNKRGKRISRQSVWEIVKTAG 242

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               +      HTLRHSFATHL+  G D+R++Q +LGH  ++TTQIYT+V+ +     ++
Sbjct: 243 GRADITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPE----ALI 298

Query: 312 EIYDQTHPSIT 322
           E Y   HP   
Sbjct: 299 ETYLTAHPRAR 309


>gi|62258790|gb|AAX77820.1| unknown protein [synthetic construct]
          Length = 327

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 146/309 (47%), Gaps = 18/309 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E+      +L NL +E GLS+ T+ SY  D +    + A           +  L + ++ 
Sbjct: 26  EVSSAVDAFLDNLWLEHGLSQNTISSYRTDLKFLQNYFAK--------TDLISLDFEQLY 77

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           AFIS R        S  R +S ++ F  +L     T  +    +   K +  LP+ + E 
Sbjct: 78  AFISYRSKNGYSSHSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTET 137

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+          T+ +  R+ A+L L+Y  GLR+SE + L   +I  +   +++ G
Sbjct: 138 DVERLL-----QAPDMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMG 192

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG K RIVP+     + + +Y+      L+ N  +  +F     K +    F   I+   
Sbjct: 193 KGSKERIVPIGEYALEYLQKYFAEARRSLSENFKEKAVFISKHAKRITRQSFWHRIKNYA 252

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+    + HTLRH+FATHLL++G DLRS+Q +LGH  +STT IYT+++       + 
Sbjct: 253 LIAGINTDISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR----LQ 308

Query: 312 EIYDQTHPS 320
           EIY + HP 
Sbjct: 309 EIYQKHHPR 317


>gi|330895934|gb|EGH28218.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 298

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 97/304 (31%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GLS  T  SY  D   F  +L     + I+           I   ++ 
Sbjct: 9   IDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLISA------GREVILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R       RS  R LSG++ F +YL + K+ +    L +   +    LP++L+E     L
Sbjct: 63  RVENAYKPRSTARFLSGVRGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L     ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K 
Sbjct: 123 -----LAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y        L       LF   RG  +    F   I+      G+
Sbjct: 178 RLVPMGEESIVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ +
Sbjct: 238 GKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHV----ARARLQELHAR 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|310766537|gb|ADP11487.1| Tyrosine recombinase xerD [Erwinia sp. Ejp617]
          Length = 297

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 95/306 (31%), Positives = 150/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L IER L++ T+ SY  D R    +LA      + ++         ++ F+++
Sbjct: 7   IEQFLDALWIERNLAQNTVDSYRLDLRSLGDWLAHQQLSLLNVEVFN------LQEFLAQ 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q   L
Sbjct: 61  RLEGGYKATSSARLLSAMRRLFQYLYREKLREDDPSALLSSPKLPQRLPKDLSEAQVERL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +    L        I+ R+ A+L LLY  GLR++E + LT  +I   Q  +R+ GKG+K 
Sbjct: 121 LQAPCLEQP-----IELRDKAMLELLYATGLRVTELVGLTLSDISLRQGVVRVIGKGNKE 175

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       I +Y     P+ LN      LF   R K +    F   I+      G+
Sbjct: 176 RLVPMGEEAVHWIEQYIEYGRPWLLNGQTIDVLFPSNRAKQMTRQTFWHRIKHYATLAGI 235

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 236 DSDKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 291

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 292 QHHPRA 297


>gi|222151393|ref|YP_002560549.1| site-specific tyrosine recombinase XerD [Macrococcus caseolyticus
           JCSC5402]
 gi|222120518|dbj|BAH17853.1| site-specific tyrosine recombinase XerD [Macrococcus caseolyticus
           JCSC5402]
          Length = 295

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 89/309 (28%), Positives = 156/309 (50%), Gaps = 15/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +    +L  + IE+GLS+ T+ +Y  D   +  FL     E+  I +I  +    I  
Sbjct: 1   MQEIIDEFLHFIMIEKGLSENTIAAYRRDLNHYKKFL-----EESHIGSIDNIDRFTISL 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+ K +      ++L R  + ++ F ++  + K   +   + +   K    LP  L  ++
Sbjct: 56  FLGKLKDDGKSSKTLARVTASVRGFHQFALREKYAVKDPTIILEPPKFERKLPGILTVEE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                 ++ L +   +K    R+ A+L LLY  G+R+SE ++L   ++      +++ GK
Sbjct: 116 V-----DIFLSSPDTSKVTGRRDQAMLELLYATGMRVSELINLDVADVNTIMGFVKVTGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G+K RIVP+   + K +  Y  +     L   +   LF    GK +    F + ++Q++ 
Sbjct: 171 GNKERIVPIGTHMIKLMDAYIANTRHKMLKKEMTDSLFLNFHGKRMTRQGFWKIMKQVQA 230

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    T HTLRHSFATHLL NG DLR++Q +LGH  +S+TQ+YT++++K     + E
Sbjct: 231 ESGIQKKLTPHTLRHSFATHLLENGADLRAVQEMLGHADISSTQLYTHIDTKQ----IRE 286

Query: 313 IYDQTHPSI 321
           +Y  THP  
Sbjct: 287 VYKNTHPRA 295


>gi|300718203|ref|YP_003743006.1| Tyrosine recombinase [Erwinia billingiae Eb661]
 gi|299064039|emb|CAX61159.1| Tyrosine recombinase [Erwinia billingiae Eb661]
          Length = 297

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 94/306 (30%), Positives = 150/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L IER L++ T+ SY  D      +L            + ++   +++ F+++
Sbjct: 7   IEQFLDALWIERNLAENTVASYRLDLLSLAGWLQH------NESNLLRVDAVDLQGFLAE 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q   L
Sbjct: 61  RVEGGYKATSSARLLSAMRRLFQYLYREKLREDDPSALLASPKLPQRLPKDLSEAQIDRL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +           + I+ R+ A+L LLY  GLR++E +SLT  N+   Q  +R+ GKGDK 
Sbjct: 121 L-----QAPSVEQPIELRDKAMLELLYATGLRVTELVSLTLNNVSLRQGVVRVIGKGDKE 175

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       I +Y     P+ LN      LF   R + +    F   I+      G+
Sbjct: 176 RLVPLGEEAVHWIEQYLEYGRPWLLNGQTLDVLFPSSRAQQMTRQTFWHRIKHYATLAGI 235

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 236 DSAKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 291

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 292 QHHPRA 297


>gi|325839425|ref|ZP_08166864.1| tyrosine recombinase XerD [Turicibacter sp. HGF1]
 gi|325490545|gb|EGC92861.1| tyrosine recombinase XerD [Turicibacter sp. HGF1]
          Length = 305

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 93/308 (30%), Positives = 158/308 (51%), Gaps = 14/308 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             ++L +L I+RGLS  T  SYE D  ++L++L     +  ++  + ++    ++ ++  
Sbjct: 9   LNDFLAHLLIDRGLSLNTKISYERDLTEYLLYL-----QNQSVHQLDEIRREHVQQYLIT 63

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + +  +S+ R LS I+SF +YL   KI+  +    + + K    LP  L+  +    
Sbjct: 64  LYERNLNTKSVARHLSAIRSFHQYLMIEKISNTNPCELIESPKLKRHLPEILSIDEVE-- 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               LL + +     D RN A++ L+Y  GLR+SE L L   ++      +R  GKGDK 
Sbjct: 122 ---HLLSSFNTKTVNDIRNKAMVELMYASGLRVSELLQLKLDDVHLSMMFVRCVGKGDKE 178

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RIVP+     + +  Y D    +L       LF    G+ +    F + +++  +  G+ 
Sbjct: 179 RIVPIGEVATELLQLYLDTARPNLLKKSNDWLFLNRFGEVMTRQGFWKILKKQAKEAGIE 238

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRHSFATHL+ NG DLR +Q +LGH  +STTQIYT+++ ++    + ++YD  
Sbjct: 239 KEISPHKLRHSFATHLIENGVDLRLVQEMLGHSDISTTQIYTHISKEH----LKDVYDLY 294

Query: 318 HPSITQKD 325
           HP   + D
Sbjct: 295 HPRSQKDD 302


>gi|309796245|ref|ZP_07690655.1| tyrosine recombinase XerC [Escherichia coli MS 145-7]
 gi|308120127|gb|EFO57389.1| tyrosine recombinase XerC [Escherichia coli MS 145-7]
          Length = 298

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 89/311 (28%), Positives = 152/311 (48%), Gaps = 17/311 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+      + F +     +  +Q+ +Q   T +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFAS-----ENGLQSWQQCDVTMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L   ++  +   + + G
Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDINHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHPSITQ 323
           +YD  HP   +
Sbjct: 286 VYDAAHPRAKR 296


>gi|332160506|ref|YP_004297083.1| site-specific tyrosine recombinase XerD [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318607025|emb|CBY28523.1| tyrosine recombinase XerD [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664736|gb|ADZ41380.1| site-specific tyrosine recombinase XerD [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330863449|emb|CBX73568.1| tyrosine recombinase xerD [Yersinia enterocolitica W22703]
          Length = 299

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 150/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L +ER L++ TL SY  D      +L  +         + +    ++++F+++
Sbjct: 9   IEQFLDALWLERNLAENTLASYRLDLHALSGWLEHHD------SDLLRAGSQDLQSFLAE 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q   L
Sbjct: 63  RIEGGYKSTSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +     ++ +    ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K 
Sbjct: 123 L-----NSPNVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKE 177

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       I  Y     P+ +N      LF   R + +    F   I+      G+
Sbjct: 178 RLVPLGEEAVYWIENYMEYGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGI 237

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  ++ 
Sbjct: 238 DSERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKLLHQ 293

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 294 QHHPRA 299


>gi|238763216|ref|ZP_04624181.1| Tyrosine recombinase xerD [Yersinia kristensenii ATCC 33638]
 gi|238698489|gb|EEP91241.1| Tyrosine recombinase xerD [Yersinia kristensenii ATCC 33638]
          Length = 299

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 150/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L +ER L++ TL SY  D      +L  +         + +    ++++F+++
Sbjct: 9   IEQFLDALWLERNLAENTLASYRLDLHALSGWLEHHD------SDLLRAGSQDLQSFLAE 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q   L
Sbjct: 63  RIEGGYKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +     ++ +    ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K 
Sbjct: 123 L-----NSPNVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKE 177

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       I  Y     P+ +N      LF   R + +    F   I+      G+
Sbjct: 178 RLVPLGEEAVYWIENYMEHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGI 237

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  ++ 
Sbjct: 238 DSERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKLLHQ 293

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 294 QHHPRA 299


>gi|149192204|ref|ZP_01870421.1| site-specific tyrosine recombinase XerD [Vibrio shilonii AK1]
 gi|148833962|gb|EDL50982.1| site-specific tyrosine recombinase XerD [Vibrio shilonii AK1]
          Length = 304

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 93/306 (30%), Positives = 151/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L ++ +ERGLS+ TL SY  D  + L ++  +         +  +S + ++ + + 
Sbjct: 14  VEQFLDSMWMERGLSENTLSSYRNDLFKLLKWMNEHNYR------LDFISLSGLQEYQTW 67

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q     S  R LS I+   +YL + K+ ++     + + K    LP+ L E Q   L
Sbjct: 68  LMDQNYQQSSRARMLSAIRRLFQYLHREKLRSDDPTALLVSPKLPKRLPKDLTEDQVTAL 127

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++            I+ R+ A+L LLY  GLR++E +SLT +NI   Q  +R+ GKG+K 
Sbjct: 128 LE-----APDPNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGNKE 182

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +    I E+ +   P  L       +F   R + +    F   I+       +
Sbjct: 183 RLVPMGENAIDWISEFIEKGRPALLGDKTSDVVFPSKRARQMTRQTFWHRIKFYAVLADI 242

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     +  I+ 
Sbjct: 243 DTELLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKNIHS 298

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 299 QHHPRA 304


>gi|315444421|ref|YP_004077300.1| tyrosine recombinase XerD subunit [Mycobacterium sp. Spyr1]
 gi|315262724|gb|ADT99465.1| tyrosine recombinase XerD subunit [Mycobacterium sp. Spyr1]
          Length = 320

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 85/318 (26%), Positives = 148/318 (46%), Gaps = 19/318 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L  + Q +L +L IERG++  TL SY  D R++   L         +  +  ++ T++  
Sbjct: 13  LDGQLQGYLDHLAIERGVAANTLSSYRRDLRRYAEHLKAR-----GVGDLAAVTETDVSE 67

Query: 74  FISKRRTQK-------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           F+   R          +   S  R+L  ++   ++     I       +++    S  LP
Sbjct: 68  FLVALRLGDPDGGVVPLSAVSAARALIAVRGLHRFAAAEGIAAIDVARDVKPPTPSRRLP 127

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           ++L+  + L L++     +  ++  +  RN A+L LLY  G RISEA+ L   ++     
Sbjct: 128 KSLSIDEVLALLEAAGGDSEADS-PLTLRNRALLELLYSTGARISEAVGLDIDDVDTSAR 186

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQ 244
           ++ ++GKG K R++P+      A+  Y      DL    +    +F   RG  L+     
Sbjct: 187 SVLLRGKGGKQRLIPIGRPAVTALETYLVRGRPDLARRGRGTPAIFLNARGGRLSRQSAW 246

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + ++      G+  + + H LRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V   
Sbjct: 247 QVLQDAAGRAGVTATVSPHVLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVT-- 304

Query: 305 NGGDWMMEIYDQTHPSIT 322
              + + E++   HP   
Sbjct: 305 --VNALREVWAGAHPRAR 320


>gi|153005549|ref|YP_001379874.1| tyrosine recombinase XerC [Anaeromyxobacter sp. Fw109-5]
 gi|152029122|gb|ABS26890.1| tyrosine recombinase XerC [Anaeromyxobacter sp. Fw109-5]
          Length = 311

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 103/319 (32%), Positives = 152/319 (47%), Gaps = 21/319 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L  E Q +   L  ER  S  T+++Y  D  Q+  +LA   +  +        S   +RA
Sbjct: 8   LPPEVQRFAVYLRTERRASPHTVKAYLTDLSQYAAYLAGAGQGVVPS------SPALVRA 61

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F++ R   + G  SL R LS I++  ++L +  +   +   ++   K+   LP+ L E++
Sbjct: 62  FLA-RAAGEAGATSLGRKLSAIRTLYRFLVREGLAAGNPARSVSGPKRPMRLPQVLPEEE 120

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              LV+   L        ++ R+ A L LLY  GLR+SE   L   +I      +R+ GK
Sbjct: 121 VAALVEAPELAAP-----LEQRDRAFLELLYASGLRVSELTGLDLASIDLSGRLVRVLGK 175

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-----IQLPLFRGIRGKPLNPGVFQRYIR 248
            +K RIVP   S  +A+  Y D     L         +  LF   RG  L+P    R + 
Sbjct: 176 RNKERIVPFGASAGEAVRRYLDEARPILAAGRDHATAEEALFLNYRGGRLSPRSVARRLD 235

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GLP     H LRH FATHLL NG DLR IQ +LGH  LSTTQ YT+V+ K    
Sbjct: 236 RWVLATGLPRHVHPHVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTHVDWKR--- 292

Query: 309 WMMEIYDQTHPSITQKDKK 327
            +  +YD  HP   ++ ++
Sbjct: 293 -LAAVYDAAHPRAKRERER 310


>gi|323964056|gb|EGB59546.1| tyrosine recombinase XerC [Escherichia coli M863]
 gi|327250661|gb|EGE62367.1| tyrosine recombinase XerC [Escherichia coli STEC_7v]
          Length = 298

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 88/311 (28%), Positives = 152/311 (48%), Gaps = 17/311 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+      + F +     +  +Q+ +Q     +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFAS-----ENGLQSWQQCDAAMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DINRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHPSITQ 323
           +YD  HP   +
Sbjct: 286 VYDAAHPRAKR 296


>gi|218708546|ref|YP_002416167.1| site-specific tyrosine recombinase XerD [Vibrio splendidus LGP32]
 gi|218321565|emb|CAV17517.1| Tyrosine recombinase xerD [Vibrio splendidus LGP32]
          Length = 320

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 94/306 (30%), Positives = 150/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + +ERGLS+ TL SY  D  + L ++            +  +S + ++ +   
Sbjct: 30  VEQFLDAMWMERGLSENTLVSYRTDLSKLLTWMEKNNYR------LDFISLSGLQDYQGW 83

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    S  R LS I+   +YL + K+  +     + + K    LP+ L+E+Q  +L
Sbjct: 84  LADADFKQTSRARMLSAIRRLFQYLHREKVRADDPSALLISPKLPKRLPKDLSEEQVDSL 143

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++            I+ R+ A+L LLY  GLR++E +SLT +NI   Q  +R+ GKG K 
Sbjct: 144 LE-----APDPNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGKE 198

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +    I  + +   P  L  N    +F   R K +    F   I+      G+
Sbjct: 199 RLVPMGENAVDWIETFIEQGRPQLLGDNSSDVVFPSKRAKQMTRQTFWYRIKHYSVIAGI 258

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +I+ 
Sbjct: 259 DTELLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIHA 314

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 315 QHHPRA 320


>gi|323974393|gb|EGB69521.1| tyrosine recombinase XerC [Escherichia coli TW10509]
          Length = 298

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 89/311 (28%), Positives = 153/311 (49%), Gaps = 17/311 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+      + F +     +  +Q+ +Q   T +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFAS-----ENGLQSWQQCDVTMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DINRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHPSITQ 323
           +YD  HP   +
Sbjct: 286 VYDAAHPRAKR 296


>gi|226328247|ref|ZP_03803765.1| hypothetical protein PROPEN_02140 [Proteus penneri ATCC 35198]
 gi|225202980|gb|EEG85334.1| hypothetical protein PROPEN_02140 [Proteus penneri ATCC 35198]
          Length = 312

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 158/305 (51%), Gaps = 17/305 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L N+ +E+GLS  TL SY  D +    +LA +  + +++ T+      ++++F++ 
Sbjct: 22  IEQFLDNIWLEQGLSANTLSSYRLDLQALGQWLAHHQLDWLSVSTL------DLQSFLAT 75

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  +     S  R LS ++   +YL + K+  +     +   K    LP+ L+E+Q   L
Sbjct: 76  RLDEGYKASSAARLLSTMRRLFQYLYREKLRLDDPSALLSTPKLPKRLPKDLSEQQVDDL 135

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +     +     + ++ R+ A+L +LY CGLR+SE + L+  +I   Q  LR+ GKGDK 
Sbjct: 136 L-----NAPCIDEPLELRDKAMLEVLYACGLRVSELVGLSLSDISLRQGVLRVIGKGDKE 190

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       + +Y     P  +       +F  +RG+ +    F   I+      G+
Sbjct: 191 RLVPLGEEAIYWLEQYLQYGRPTLMQGKTDDIVFPSLRGQKMTRQTFWHRIKHYAVIAGI 250

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  ++ 
Sbjct: 251 DTEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKVLHQ 306

Query: 316 QTHPS 320
           Q HP 
Sbjct: 307 QHHPR 311


>gi|256003998|ref|ZP_05428984.1| tyrosine recombinase XerD [Clostridium thermocellum DSM 2360]
 gi|281417393|ref|ZP_06248413.1| tyrosine recombinase XerD [Clostridium thermocellum JW20]
 gi|255992126|gb|EEU02222.1| tyrosine recombinase XerD [Clostridium thermocellum DSM 2360]
 gi|281408795|gb|EFB39053.1| tyrosine recombinase XerD [Clostridium thermocellum JW20]
 gi|316940575|gb|ADU74609.1| tyrosine recombinase XerD [Clostridium thermocellum DSM 1313]
          Length = 294

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 97/303 (32%), Positives = 156/303 (51%), Gaps = 16/303 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L+ ++ LS  TLQSY+ D  Q++ +L     + + IQ I   + T + A++   +
Sbjct: 7   HFLDFLKNDKRLSLNTLQSYKRDIEQYITYL-----KDMKIQNIANTNKTTVIAYLLHLQ 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +     ++ R+L+ I+SF +YL K+ I ++    N+ + K    LP+ L+ K+   L++
Sbjct: 62  KKGRATSTISRNLASIRSFYQYLTKKGIISQDPTENLESPKVEKKLPQILSTKEVELLLE 121

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                          R+ A+L LLY  G+R+SE +SL   ++  +   +R   KG + RI
Sbjct: 122 Q-----PKCDDLKGYRDKAMLELLYATGIRVSELISLDLDDVNLEMQYIRCN-KGARERI 175

Query: 200 VPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+      A+ EY        +    +  LF  + GK L    F + I+Q +    +  
Sbjct: 176 VPIGSVSVNALQEYLTKSRNLLIQRPDEKALFVNVNGKRLTRQGFWKIIKQYKNQAKINK 235

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             T HTLRHSFA HLL NG DLRSIQ +LGH  +S+TQIY  +      + + EIY +TH
Sbjct: 236 DITPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQL----AKNRIKEIYKKTH 291

Query: 319 PSI 321
           P  
Sbjct: 292 PRA 294


>gi|312883960|ref|ZP_07743677.1| site-specific tyrosine recombinase XerD [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368418|gb|EFP95953.1| site-specific tyrosine recombinase XerD [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 302

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 92/323 (28%), Positives = 153/323 (47%), Gaps = 23/323 (7%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M    LP+          + +L  + +ERGLS+ TL SY  D  + L ++          
Sbjct: 1   MSQQILPDQP------VVEQFLDAMWMERGLSENTLSSYRNDLFKLLKWMFENNYR---- 50

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             +  +S + ++ F S    +     S  R LS ++   +Y+ + ++ ++     + + K
Sbjct: 51  --LNFISISGLQDFQSWLVDEGYKQTSRARMLSALRRLFQYMHRERLRSDDPSALLVSPK 108

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LP+ L+E+Q   L     L        I+ R+ A+L LLY  GLR++E +SLT +N
Sbjct: 109 LPKRLPKDLSEQQVDAL-----LSAPDANNPIELRDKAMLELLYATGLRVTELVSLTMEN 163

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLN 239
           +   Q  +R+ GKG K R+VP+     + I  +        L       +F   R K + 
Sbjct: 164 MSLRQGVVRVTGKGGKERLVPMGEDAIEWIETFLHQGRSELLGEKTSDVVFPSKRAKQMT 223

Query: 240 PGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              F   I+      G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIY
Sbjct: 224 RQTFWHRIKYYAMLAGIDSELLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIY 283

Query: 299 TNVNSKNGGDWMMEIYDQTHPSI 321
           T+V ++     + +++ + HP  
Sbjct: 284 THVATER----LKQLHSEHHPRA 302


>gi|294054307|ref|YP_003547965.1| tyrosine recombinase XerD [Coraliomargarita akajimensis DSM 45221]
 gi|293613640|gb|ADE53795.1| tyrosine recombinase XerD [Coraliomargarita akajimensis DSM 45221]
          Length = 312

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 96/317 (30%), Positives = 158/317 (49%), Gaps = 16/317 (5%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           + +   L++  +++L  LE+ERGL+  T+QSY  D  QF  FL      +  I + + + 
Sbjct: 7   DTIPENLVEAVESFLVWLELERGLATNTVQSYAQDLCQFASFL-----HRAGIGSWQAVE 61

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
             ++ A+ ++         S  R LS ++ F ++L + +I  +     +   K+  SLP 
Sbjct: 62  AEQVSAWTAELAV-GYARSSQARKLSAVRMFARHLVREQIRADDFTELVSAPKQRRSLPE 120

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L+ ++   L++   + T H       R+ AIL L Y  GLR+SE   L  Q++  D+  
Sbjct: 121 VLSREEVDLLLNAPSMSTPH-----GLRDRAILELFYSSGLRVSELCGLPLQSVNLDEGF 175

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           LR+ GKG K R+VP+  +   A+ +Y  +     +       +F   RG+ ++  +    
Sbjct: 176 LRVYGKGSKERVVPIGAAAVAALKDYLAVGRSQFVQAKTGSEVFLSQRGQAISRKMVWVM 235

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           I+Q    +G+      H LRHSFATHLL  G DLR+IQ +LGH  +STTQIYT V     
Sbjct: 236 IKQHATKVGIKKPIKPHLLRHSFATHLLEGGADLRAIQEMLGHADISTTQIYTAV----Q 291

Query: 307 GDWMMEIYDQTHPSITQ 323
            + + + +   HP   Q
Sbjct: 292 ANRLADEHALHHPRSKQ 308


>gi|311281510|ref|YP_003943741.1| tyrosine recombinase XerC [Enterobacter cloacae SCF1]
 gi|308750705|gb|ADO50457.1| tyrosine recombinase XerC [Enterobacter cloacae SCF1]
          Length = 300

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 86/315 (27%), Positives = 149/315 (47%), Gaps = 17/315 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +    L    + +L+ L +ER LS +TL +Y       +         +  + + +Q   
Sbjct: 1   MNDSPLSAAVERFLRYLGVERQLSPITLLNYRRQLDAIMTLAG-----ESGVASWQQCDA 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             IR++  + R + +G  SL   LS ++SF  +L  +   + +    +   K    LP+ 
Sbjct: 56  AVIRSWAVRSRRKGLGPASLALRLSALRSFFDWLVSQGELSANPAKAVSAPKAPRHLPKN 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++      L+D  L         +  R+ A+L ++YG GLR+SE ++L  +++  +   +
Sbjct: 116 IDVDDVNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVNLDLRHLSLESGEV 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +P+  S  + +  + DL    L       LF    GK ++    Q+   
Sbjct: 170 WVMGKGSKERRLPIGRSAVQWVEHWLDLRG--LFGAEDDALFLSKLGKRISTRNVQKRFA 227

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++   
Sbjct: 228 EWGIKQGLNSHVNPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 284

Query: 309 WMMEIYDQTHPSITQ 323
            +  +YD  HP   +
Sbjct: 285 -LASVYDAAHPRAKR 298


>gi|229592394|ref|YP_002874513.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens
           SBW25]
 gi|229364260|emb|CAY51975.1| integrase/recombinase [Pseudomonas fluorescens SBW25]
          Length = 298

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 96/304 (31%), Positives = 148/304 (48%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GLS  T Q+Y  D   F  +L     E I            I   ++ 
Sbjct: 9   IDRFLDALWLEKGLSDNTRQAYRSDLALFNGWLQEKNLELINA------GRELILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  Q    RS  R LSG++ F +YL + K+      L +   +    LP++L+E     L
Sbjct: 63  RLEQNYKPRSTARFLSGVRGFYRYLLREKLIALDPTLQVEMPQLGRPLPKSLSEADVDAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +          ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K 
Sbjct: 123 L-----AAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y      +L        LF  +RG+ +    F   I+   +  G+
Sbjct: 178 RLVPMGEEAIVWVERYMRDARGELLGGRPSDVLFPSLRGEQMTRQTFWHRIKHQAKVAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + +++ +
Sbjct: 238 GKALSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHV----ARARLQDMHAK 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|108799908|ref|YP_640105.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. MCS]
 gi|119869018|ref|YP_938970.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. KMS]
 gi|108770327|gb|ABG09049.1| tyrosine recombinase XerD subunit [Mycobacterium sp. MCS]
 gi|119695107|gb|ABL92180.1| tyrosine recombinase XerD subunit [Mycobacterium sp. KMS]
          Length = 318

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 88/319 (27%), Positives = 148/319 (46%), Gaps = 19/319 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
            L  + Q +L +L IERG++  TL SY  D R++   L         ++ + +++ +++ 
Sbjct: 10  ALDDQLQGYLDHLTIERGVAANTLSSYRRDLRRYSEHLTGR-----GVEDLAKVTESDVS 64

Query: 73  AFISKRR-------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
            F+   R        Q +   S  R+L  ++   ++     +T       ++       L
Sbjct: 65  DFLVALRRGDPDTGAQALSAVSAARALIAVRGLHRFATAEGLTDVDVARAVKPPTPGRRL 124

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P++L+  + L L+D      S     +  RN A+L LLY  G RISEA+ L   ++    
Sbjct: 125 PKSLSIDEVLALLD-GAGGDSEADGPLTLRNRALLELLYSTGARISEAVGLDIDDVDTHA 183

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVF 243
            ++ ++GKG K R+VP+      A+  Y      DL    +    +F   RG  L+    
Sbjct: 184 RSVLLRGKGGKQRLVPIGRPAVSALDAYLVRGRPDLARRGRGTPAIFLNARGGRLSRQSA 243

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            + ++      G+  + + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V  
Sbjct: 244 WQVLQDAAERAGITSAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVT- 302

Query: 304 KNGGDWMMEIYDQTHPSIT 322
                 + E++   HP   
Sbjct: 303 ---VHALREVWAGAHPRAR 318


>gi|237800088|ref|ZP_04588549.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022943|gb|EGI03000.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 298

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 95/304 (31%), Positives = 140/304 (46%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GLS  T  SY  D   F  +L            +       I   ++ 
Sbjct: 9   IDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERN------VDLPVAGREVILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R       RS  R LSG + F +YL + K+      L +   +    LP++L+E     L
Sbjct: 63  RVENAYKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +          ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K 
Sbjct: 123 L-----AAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y        L       LF   RG  +    F   I+      G+
Sbjct: 178 RLVPMGEEAIVWVERYMRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ +
Sbjct: 238 GKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHV----ARARLQEMHAK 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|86147402|ref|ZP_01065715.1| tyrosine recombinase [Vibrio sp. MED222]
 gi|85834830|gb|EAQ52975.1| tyrosine recombinase [Vibrio sp. MED222]
          Length = 304

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 94/306 (30%), Positives = 150/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + +ERGLS+ TL SY  D  + L ++            +  +S + ++ +   
Sbjct: 14  VEQFLDAMWMERGLSENTLVSYRTDLSKLLTWMEKNNYR------LDFISLSGLQDYQGW 67

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    S  R LS I+   +YL + K+  +     + + K    LP+ L+E+Q  +L
Sbjct: 68  LADADFKQTSRARMLSAIRRLFQYLHREKVRADDPSALLISPKLPKRLPKDLSEEQVDSL 127

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++            I+ R+ A+L LLY  GLR++E +SLT +NI   Q  +R+ GKG K 
Sbjct: 128 LE-----APDPNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGKE 182

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +    I  + +   P  L  N    +F   R K +    F   I+      G+
Sbjct: 183 RLVPMGENAVDWIETFIEQGRPQLLGDNSSDVVFPSKRAKQMTRQTFWYRIKHYSVIAGI 242

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +I+ 
Sbjct: 243 DTDLLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIHA 298

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 299 QHHPRA 304


>gi|24115108|ref|NP_709618.1| site-specific tyrosine recombinase XerC [Shigella flexneri 2a str.
           301]
 gi|30064893|ref|NP_839064.1| site-specific tyrosine recombinase XerC [Shigella flexneri 2a str.
           2457T]
 gi|82779010|ref|YP_405359.1| site-specific tyrosine recombinase XerC [Shigella dysenteriae
           Sd197]
 gi|194438678|ref|ZP_03070766.1| tyrosine recombinase XerC [Escherichia coli 101-1]
 gi|253775565|ref|YP_003038396.1| site-specific tyrosine recombinase XerC [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254163753|ref|YP_003046861.1| site-specific tyrosine recombinase XerC [Escherichia coli B str.
           REL606]
 gi|293417277|ref|ZP_06659902.1| tyrosine recombinase XerC [Escherichia coli B185]
 gi|297521542|ref|ZP_06939928.1| site-specific tyrosine recombinase XerC [Escherichia coli OP50]
 gi|300904066|ref|ZP_07121946.1| tyrosine recombinase XerC [Escherichia coli MS 84-1]
 gi|300921478|ref|ZP_07137826.1| tyrosine recombinase XerC [Escherichia coli MS 115-1]
 gi|300930023|ref|ZP_07145455.1| tyrosine recombinase XerC [Escherichia coli MS 187-1]
 gi|301303707|ref|ZP_07209828.1| tyrosine recombinase XerC [Escherichia coli MS 124-1]
 gi|309784527|ref|ZP_07679165.1| tyrosine recombinase XerC [Shigella dysenteriae 1617]
 gi|312971902|ref|ZP_07786076.1| tyrosine recombinase XerC [Escherichia coli 1827-70]
 gi|331655496|ref|ZP_08356489.1| tyrosine recombinase XerC [Escherichia coli M718]
 gi|34222798|sp|Q7ZAL9|XERC_SHIFL RecName: Full=Tyrosine recombinase xerC
 gi|123769525|sp|Q329Y7|XERC_SHIDS RecName: Full=Tyrosine recombinase xerC
 gi|24054376|gb|AAN45325.1| site-specific recombinase [Shigella flexneri 2a str. 301]
 gi|30043153|gb|AAP18875.1| site-specific recombinase [Shigella flexneri 2a str. 2457T]
 gi|81243158|gb|ABB63868.1| site-specific recombinase [Shigella dysenteriae Sd197]
 gi|194422482|gb|EDX38481.1| tyrosine recombinase XerC [Escherichia coli 101-1]
 gi|242379341|emb|CAQ34153.1| site-specific recombinase, acts on cer sequence of ColE1, effects
           chromosome segregation at cell division, subunit of Xer
           site-specific recombination system [Escherichia coli
           BL21(DE3)]
 gi|253326609|gb|ACT31211.1| tyrosine recombinase XerC [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253975654|gb|ACT41325.1| site-specific tyrosine recombinase XerC [Escherichia coli B str.
           REL606]
 gi|253979810|gb|ACT45480.1| site-specific tyrosine recombinase XerC [Escherichia coli
           BL21(DE3)]
 gi|281603204|gb|ADA76188.1| Tyrosine recombinase xerC [Shigella flexneri 2002017]
 gi|291431045|gb|EFF04040.1| tyrosine recombinase XerC [Escherichia coli B185]
 gi|300403946|gb|EFJ87484.1| tyrosine recombinase XerC [Escherichia coli MS 84-1]
 gi|300411595|gb|EFJ94905.1| tyrosine recombinase XerC [Escherichia coli MS 115-1]
 gi|300462056|gb|EFK25549.1| tyrosine recombinase XerC [Escherichia coli MS 187-1]
 gi|300841007|gb|EFK68767.1| tyrosine recombinase XerC [Escherichia coli MS 124-1]
 gi|308927633|gb|EFP73102.1| tyrosine recombinase XerC [Shigella dysenteriae 1617]
 gi|310334279|gb|EFQ00484.1| tyrosine recombinase XerC [Escherichia coli 1827-70]
 gi|313647147|gb|EFS11602.1| tyrosine recombinase XerC [Shigella flexneri 2a str. 2457T]
 gi|315254176|gb|EFU34144.1| tyrosine recombinase XerC [Escherichia coli MS 85-1]
 gi|323959066|gb|EGB54735.1| tyrosine recombinase XerC [Escherichia coli H489]
 gi|323969348|gb|EGB64647.1| tyrosine recombinase XerC [Escherichia coli TA007]
 gi|331046817|gb|EGI18901.1| tyrosine recombinase XerC [Escherichia coli M718]
 gi|332750959|gb|EGJ81364.1| tyrosine recombinase XerC [Shigella flexneri 4343-70]
 gi|332751049|gb|EGJ81453.1| tyrosine recombinase XerC [Shigella flexneri K-671]
 gi|332751906|gb|EGJ82301.1| tyrosine recombinase XerC [Shigella flexneri 2747-71]
 gi|332764345|gb|EGJ94580.1| tyrosine recombinase XerC [Shigella flexneri 2930-71]
 gi|332996985|gb|EGK16603.1| tyrosine recombinase XerC [Shigella flexneri VA-6]
 gi|332997912|gb|EGK17519.1| tyrosine recombinase XerC [Shigella flexneri K-218]
 gi|332998245|gb|EGK17847.1| tyrosine recombinase XerC [Shigella flexneri K-272]
 gi|333013785|gb|EGK33148.1| tyrosine recombinase XerC [Shigella flexneri K-227]
 gi|333019500|gb|EGK38781.1| tyrosine recombinase XerC [Shigella flexneri K-304]
          Length = 298

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 88/311 (28%), Positives = 152/311 (48%), Gaps = 17/311 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+      + F +     +  +Q+ +Q     +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFAS-----ENGLQSWQQCDAAMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHPSITQ 323
           +YD  HP   +
Sbjct: 286 VYDAAHPRAKR 296


>gi|170769828|ref|ZP_02904281.1| tyrosine recombinase XerC [Escherichia albertii TW07627]
 gi|170121266|gb|EDS90197.1| tyrosine recombinase XerC [Escherichia albertii TW07627]
          Length = 298

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 88/311 (28%), Positives = 153/311 (49%), Gaps = 17/311 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+      + F +     +  +Q+ +Q     +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFAS-----ENGLQSWQQCDAAMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DINRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  ++DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWFDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHPSITQ 323
           +YD  HP   +
Sbjct: 286 VYDAAHPRAKR 296


>gi|257487154|ref|ZP_05641195.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331009225|gb|EGH89281.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 298

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 96/304 (31%), Positives = 141/304 (46%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GLS  T  SY  D   F  +L            +       I   ++ 
Sbjct: 9   IDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERN------VDLPSAGREVILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R       RS  R LSG + F +YL + K+ +    L +   +    LP++L+E     L
Sbjct: 63  RVENAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L     ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K 
Sbjct: 123 -----LAAPDLSEAIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y        L       LF   RG  +    F   I+      G+
Sbjct: 178 RLVPMGEEAIVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ +
Sbjct: 238 GKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHV----ARARLQEMHAK 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|262166461|ref|ZP_06034198.1| tyrosine recombinase XerD [Vibrio mimicus VM223]
 gi|262170635|ref|ZP_06038313.1| tyrosine recombinase XerD [Vibrio mimicus MB-451]
 gi|261891711|gb|EEY37697.1| tyrosine recombinase XerD [Vibrio mimicus MB-451]
 gi|262026177|gb|EEY44845.1| tyrosine recombinase XerD [Vibrio mimicus VM223]
          Length = 302

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 151/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + +ERGL++ T+ SY  D  + L ++A +         +  +S++ ++ + S 
Sbjct: 12  VEQFLDAMWLERGLAENTVASYRNDLSKLLEWMAQHQYR------LDFISFSGLQEYQSW 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q     S  R LS I+   +YL + K+  +     + + K    LP+ L E Q   L
Sbjct: 66  LSEQNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLISPKLPTRLPKDLTEAQVEAL 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +             I+ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG K 
Sbjct: 126 L-----SAPDPQTPIELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVIGKGGKE 180

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +  + I  +        L       +F   RG+ +    F   I+       +
Sbjct: 181 RLVPMGENAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAEI 240

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            +   + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + ++++
Sbjct: 241 DVELLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHN 296

Query: 316 QTHPSI 321
           + HP  
Sbjct: 297 EHHPRA 302


>gi|304396715|ref|ZP_07378595.1| tyrosine recombinase XerD [Pantoea sp. aB]
 gi|304355511|gb|EFM19878.1| tyrosine recombinase XerD [Pantoea sp. aB]
          Length = 297

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L IER L++ TL SY  D +    +LA +        T+  ++  +++ F+++R
Sbjct: 8   EQFLDALWIERNLAQNTLSSYRQDLQTLTGWLAHHQ------LTLLSVTPLDLQQFLAER 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K+  +     +   K    LP+ L+E Q   L+
Sbjct: 62  LEGGYKATSSARLLSAMRRLFQYLYREKLRPDDPSALLSAPKLPQRLPKDLSEAQVERLL 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                   +    ++ R+ A+L LLY  GLR+SE + LT  +I   Q  +R+ GKGDK R
Sbjct: 122 -----QAPNIDIPLELRDKAMLELLYATGLRVSELIGLTLSDISLRQGVVRVIGKGDKER 176

Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       + +Y     P+ LN      +F   R + +    F   I+      G+ 
Sbjct: 177 LVPLGEEAVYWLEQYMEHGRPWLLNGQTLDVMFPSNRAQQMTRQTFWHRIKHYATLAGID 236

Query: 258 -LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H +RH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q
Sbjct: 237 SEKLSPHVMRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQ 292

Query: 317 THPSI 321
            HP  
Sbjct: 293 HHPRA 297


>gi|331675279|ref|ZP_08376030.1| tyrosine recombinase XerC [Escherichia coli TA280]
 gi|331067565|gb|EGI38969.1| tyrosine recombinase XerC [Escherichia coli TA280]
          Length = 298

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 89/311 (28%), Positives = 152/311 (48%), Gaps = 17/311 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+      + F +     +  +Q+ +Q   T +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFAS-----ENGLQSWQQCDVTMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+       
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAAWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHPSITQ 323
           +YD  HP   +
Sbjct: 286 VYDAAHPRAKR 296


>gi|258620859|ref|ZP_05715893.1| Tyrosine recombinase xerD [Vibrio mimicus VM573]
 gi|258586247|gb|EEW10962.1| Tyrosine recombinase xerD [Vibrio mimicus VM573]
          Length = 302

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 152/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + +ERGL++ T+ SY  D  + L ++A +  +      +  +S++ ++ + + 
Sbjct: 12  VEQFLDAMWLERGLAENTVASYRNDLSKLLEWMAQHQYQ------LDFISFSGLQEYQNW 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q     S  R LS I+   +YL + K+  +     + + K    LP+ L E Q   L
Sbjct: 66  LSEQNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLISPKLPTRLPKDLTEAQVEAL 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L        I+ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG K 
Sbjct: 126 -----LSAPDPQTPIELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVIGKGGKE 180

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +  + I  +        L       +F   RG+ +    F   I+       +
Sbjct: 181 RLVPMGENAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAEI 240

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            +   + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + ++++
Sbjct: 241 DVELLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHN 296

Query: 316 QTHPSI 321
           + HP  
Sbjct: 297 EHHPRA 302


>gi|291301889|ref|YP_003513167.1| tyrosine recombinase XerD [Stackebrandtia nassauensis DSM 44728]
 gi|290571109|gb|ADD44074.1| tyrosine recombinase XerD [Stackebrandtia nassauensis DSM 44728]
          Length = 301

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 85/312 (27%), Positives = 150/312 (48%), Gaps = 19/312 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  +++L ++ +ERG S  T+ +Y  D  ++L +L+     +  +  + Q++  +I  ++
Sbjct: 4   RVVRDYLDHVTVERGHSANTIAAYRRDLGRYLDWLS-----ETGLDALSQVTAADIGGYL 58

Query: 76  SKRRTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           ++          +  RS+ R+ S ++   ++     +T       +   K +  LP+A+ 
Sbjct: 59  ARLSQGDDEHPGLSARSIARATSALRGLHRFALDEGVTDTDPTQALSTPKPALRLPKAIG 118

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             +   L++      +        R++A++  LYG G R+SE +     ++  D + +R+
Sbjct: 119 VDEVARLLE----AAAILDNPTGLRDTALVEFLYGTGARVSETIGADIDDLDFDAAAVRL 174

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +GKG K+R+VPL     +A+  Y               LF   RGKPL        +R L
Sbjct: 175 RGKGGKVRVVPLGGYAVRALENYLTRARPSWTPG-HPKLFVNSRGKPLTRQGVFFILRGL 233

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+ +    HTLRHSFATHLL  G D+R +Q +LGH  +STTQIYT V      D +
Sbjct: 234 ADRAGMAVDLGPHTLRHSFATHLLDGGADIRVVQELLGHAAVSTTQIYTLVT----VDKL 289

Query: 311 MEIYDQTHPSIT 322
            E+Y  +HP   
Sbjct: 290 REVYATSHPRAR 301


>gi|16131663|ref|NP_418256.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. MG1655]
 gi|26250551|ref|NP_756591.1| site-specific tyrosine recombinase XerC [Escherichia coli CFT073]
 gi|74314323|ref|YP_312742.1| site-specific tyrosine recombinase XerC [Shigella sonnei Ss046]
 gi|82546162|ref|YP_410109.1| site-specific tyrosine recombinase XerC [Shigella boydii Sb227]
 gi|89110208|ref|AP_003988.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. W3110]
 gi|157163288|ref|YP_001460606.1| site-specific tyrosine recombinase XerC [Escherichia coli HS]
 gi|170022166|ref|YP_001727120.1| site-specific tyrosine recombinase XerC [Escherichia coli ATCC
           8739]
 gi|170083293|ref|YP_001732613.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. DH10B]
 gi|170683603|ref|YP_001746128.1| site-specific tyrosine recombinase XerC [Escherichia coli SMS-3-5]
 gi|187731086|ref|YP_001882505.1| site-specific tyrosine recombinase XerC [Shigella boydii CDC
           3083-94]
 gi|188496206|ref|ZP_03003476.1| tyrosine recombinase XerC [Escherichia coli 53638]
 gi|191166069|ref|ZP_03027904.1| tyrosine recombinase XerC [Escherichia coli B7A]
 gi|193065702|ref|ZP_03046767.1| tyrosine recombinase XerC [Escherichia coli E22]
 gi|194429226|ref|ZP_03061754.1| tyrosine recombinase XerC [Escherichia coli B171]
 gi|209921289|ref|YP_002295373.1| site-specific tyrosine recombinase XerC [Escherichia coli SE11]
 gi|218550965|ref|YP_002384756.1| site-specific tyrosine recombinase XerC [Escherichia fergusonii
           ATCC 35469]
 gi|218692087|ref|YP_002400299.1| site-specific tyrosine recombinase XerC [Escherichia coli ED1a]
 gi|218697529|ref|YP_002405196.1| site-specific tyrosine recombinase XerC [Escherichia coli 55989]
 gi|218701275|ref|YP_002408904.1| site-specific tyrosine recombinase XerC [Escherichia coli IAI39]
 gi|218707445|ref|YP_002414964.1| site-specific tyrosine recombinase XerC [Escherichia coli UMN026]
 gi|227888604|ref|ZP_04006409.1| site-specific tyrosine recombinase [Escherichia coli 83972]
 gi|238902887|ref|YP_002928683.1| site-specific tyrosine recombinase [Escherichia coli BW2952]
 gi|254039023|ref|ZP_04873074.1| tyrosine recombinase xerC [Escherichia sp. 1_1_43]
 gi|256021445|ref|ZP_05435310.1| site-specific tyrosine recombinase XerC [Shigella sp. D9]
 gi|256026158|ref|ZP_05440023.1| site-specific tyrosine recombinase XerC [Escherichia sp. 4_1_40B]
 gi|260846413|ref|YP_003224191.1| site-specific tyrosine recombinase XerC [Escherichia coli O103:H2
           str. 12009]
 gi|260857783|ref|YP_003231674.1| site-specific tyrosine recombinase XerC [Escherichia coli O26:H11
           str. 11368]
 gi|260870536|ref|YP_003236938.1| site-specific tyrosine recombinase XerC [Escherichia coli O111:H-
           str. 11128]
 gi|293407438|ref|ZP_06651358.1| xerC [Escherichia coli FVEC1412]
 gi|293413253|ref|ZP_06655915.1| tyrosine recombinase XerC [Escherichia coli B354]
 gi|293468129|ref|ZP_06664541.1| tyrosine recombinase XerC [Escherichia coli B088]
 gi|298383178|ref|ZP_06992772.1| tyrosine recombinase xerC [Escherichia coli FVEC1302]
 gi|300818718|ref|ZP_07098925.1| tyrosine recombinase XerC [Escherichia coli MS 107-1]
 gi|300823347|ref|ZP_07103478.1| tyrosine recombinase XerC [Escherichia coli MS 119-7]
 gi|300900639|ref|ZP_07118797.1| tyrosine recombinase XerC [Escherichia coli MS 198-1]
 gi|300939969|ref|ZP_07154597.1| tyrosine recombinase XerC [Escherichia coli MS 21-1]
 gi|300950424|ref|ZP_07164346.1| tyrosine recombinase XerC [Escherichia coli MS 116-1]
 gi|300955183|ref|ZP_07167580.1| tyrosine recombinase XerC [Escherichia coli MS 175-1]
 gi|300985705|ref|ZP_07177560.1| tyrosine recombinase XerC [Escherichia coli MS 45-1]
 gi|301025744|ref|ZP_07189259.1| tyrosine recombinase XerC [Escherichia coli MS 69-1]
 gi|301029028|ref|ZP_07192182.1| tyrosine recombinase XerC [Escherichia coli MS 196-1]
 gi|301047307|ref|ZP_07194393.1| tyrosine recombinase XerC [Escherichia coli MS 185-1]
 gi|301646121|ref|ZP_07246021.1| tyrosine recombinase XerC [Escherichia coli MS 146-1]
 gi|307140510|ref|ZP_07499866.1| site-specific tyrosine recombinase XerC [Escherichia coli H736]
 gi|307313615|ref|ZP_07593235.1| tyrosine recombinase XerC [Escherichia coli W]
 gi|331644544|ref|ZP_08345664.1| tyrosine recombinase XerC [Escherichia coli H736]
 gi|331660156|ref|ZP_08361092.1| tyrosine recombinase XerC [Escherichia coli TA206]
 gi|331670657|ref|ZP_08371494.1| tyrosine recombinase XerC [Escherichia coli TA271]
 gi|331679921|ref|ZP_08380584.1| tyrosine recombinase XerC [Escherichia coli H591]
 gi|331685531|ref|ZP_08386115.1| tyrosine recombinase XerC [Escherichia coli H299]
 gi|332282681|ref|ZP_08395094.1| tyrosine recombinase xerC [Shigella sp. D9]
 gi|67475542|sp|P0A8P6|XERC_ECOLI RecName: Full=Tyrosine recombinase xerC
 gi|67475545|sp|P0A8P7|XERC_ECOL6 RecName: Full=Tyrosine recombinase xerC
 gi|123728303|sp|Q31UH7|XERC_SHIBS RecName: Full=Tyrosine recombinase xerC
 gi|123732258|sp|Q3YVF5|XERC_SHISS RecName: Full=Tyrosine recombinase xerC
 gi|166918884|sp|A8A6R9|XERC_ECOHS RecName: Full=Tyrosine recombinase xerC
 gi|189030076|sp|B1IW93|XERC_ECOLC RecName: Full=Tyrosine recombinase xerC
 gi|254799333|sp|B7L968|XERC_ECO55 RecName: Full=Tyrosine recombinase xerC
 gi|254799335|sp|B7NTD1|XERC_ECO7I RecName: Full=Tyrosine recombinase xerC
 gi|254799336|sp|B7N2A1|XERC_ECO81 RecName: Full=Tyrosine recombinase xerC
 gi|254799338|sp|B1XAH7|XERC_ECODH RecName: Full=Tyrosine recombinase xerC
 gi|254799339|sp|B7NFB3|XERC_ECOLU RecName: Full=Tyrosine recombinase xerC
 gi|254799340|sp|B6I4F2|XERC_ECOSE RecName: Full=Tyrosine recombinase xerC
 gi|254799341|sp|B1LLY2|XERC_ECOSM RecName: Full=Tyrosine recombinase xerC
 gi|254799342|sp|B7LU45|XERC_ESCF3 RecName: Full=Tyrosine recombinase xerC
 gi|254799357|sp|B2TUW7|XERC_SHIB3 RecName: Full=Tyrosine recombinase xerC
 gi|259710430|sp|C4ZZ74|XERC_ECOBW RecName: Full=Tyrosine recombinase xerC
 gi|26110981|gb|AAN83165.1|AE016769_280 Integrase/recombinase xerC [Escherichia coli CFT073]
 gi|148270|gb|AAA24763.1| lambda-integrase [Escherichia coli]
 gi|1790244|gb|AAC76814.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. MG1655]
 gi|73857800|gb|AAZ90507.1| site-specific recombinase, acts on cer sequence of ColE1, effects
           chromosome segregation at cell division [Shigella sonnei
           Ss046]
 gi|81247573|gb|ABB68281.1| site-specific recombinase [Shigella boydii Sb227]
 gi|85676239|dbj|BAE77489.1| site-specific tyrosine recombinase [Escherichia coli str. K12
           substr. W3110]
 gi|157068968|gb|ABV08223.1| tyrosine recombinase XerC [Escherichia coli HS]
 gi|169757094|gb|ACA79793.1| tyrosine recombinase XerC [Escherichia coli ATCC 8739]
 gi|169891128|gb|ACB04835.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. DH10B]
 gi|170521321|gb|ACB19499.1| tyrosine recombinase XerC [Escherichia coli SMS-3-5]
 gi|187428078|gb|ACD07352.1| tyrosine recombinase XerC [Shigella boydii CDC 3083-94]
 gi|188491405|gb|EDU66508.1| tyrosine recombinase XerC [Escherichia coli 53638]
 gi|190903845|gb|EDV63559.1| tyrosine recombinase XerC [Escherichia coli B7A]
 gi|192926669|gb|EDV81298.1| tyrosine recombinase XerC [Escherichia coli E22]
 gi|194412738|gb|EDX29032.1| tyrosine recombinase XerC [Escherichia coli B171]
 gi|209914548|dbj|BAG79622.1| recombinase [Escherichia coli SE11]
 gi|218354261|emb|CAV00939.1| site-specific tyrosine recombinase [Escherichia coli 55989]
 gi|218358506|emb|CAQ91153.1| site-specific tyrosine recombinase [Escherichia fergusonii ATCC
           35469]
 gi|218371261|emb|CAR19095.1| site-specific tyrosine recombinase [Escherichia coli IAI39]
 gi|218429651|emb|CAR10472.1| site-specific tyrosine recombinase [Escherichia coli ED1a]
 gi|218434542|emb|CAR15469.1| site-specific tyrosine recombinase [Escherichia coli UMN026]
 gi|226838714|gb|EEH70742.1| tyrosine recombinase xerC [Escherichia sp. 1_1_43]
 gi|227834443|gb|EEJ44909.1| site-specific tyrosine recombinase [Escherichia coli 83972]
 gi|238863558|gb|ACR65556.1| site-specific tyrosine recombinase [Escherichia coli BW2952]
 gi|257756432|dbj|BAI27934.1| site-specific tyrosine recombinase XerC [Escherichia coli O26:H11
           str. 11368]
 gi|257761560|dbj|BAI33057.1| site-specific tyrosine recombinase XerC [Escherichia coli O103:H2
           str. 12009]
 gi|257766892|dbj|BAI38387.1| site-specific tyrosine recombinase XerC [Escherichia coli O111:H-
           str. 11128]
 gi|260451346|gb|ACX41768.1| tyrosine recombinase XerC [Escherichia coli DH1]
 gi|291321507|gb|EFE60945.1| tyrosine recombinase XerC [Escherichia coli B088]
 gi|291425549|gb|EFE98587.1| xerC [Escherichia coli FVEC1412]
 gi|291468201|gb|EFF10698.1| tyrosine recombinase XerC [Escherichia coli B354]
 gi|298276414|gb|EFI17933.1| tyrosine recombinase xerC [Escherichia coli FVEC1302]
 gi|299878022|gb|EFI86233.1| tyrosine recombinase XerC [Escherichia coli MS 196-1]
 gi|300300826|gb|EFJ57211.1| tyrosine recombinase XerC [Escherichia coli MS 185-1]
 gi|300317900|gb|EFJ67684.1| tyrosine recombinase XerC [Escherichia coli MS 175-1]
 gi|300355855|gb|EFJ71725.1| tyrosine recombinase XerC [Escherichia coli MS 198-1]
 gi|300395867|gb|EFJ79405.1| tyrosine recombinase XerC [Escherichia coli MS 69-1]
 gi|300407979|gb|EFJ91517.1| tyrosine recombinase XerC [Escherichia coli MS 45-1]
 gi|300450231|gb|EFK13851.1| tyrosine recombinase XerC [Escherichia coli MS 116-1]
 gi|300455173|gb|EFK18666.1| tyrosine recombinase XerC [Escherichia coli MS 21-1]
 gi|300524133|gb|EFK45202.1| tyrosine recombinase XerC [Escherichia coli MS 119-7]
 gi|300528684|gb|EFK49746.1| tyrosine recombinase XerC [Escherichia coli MS 107-1]
 gi|301075647|gb|EFK90453.1| tyrosine recombinase XerC [Escherichia coli MS 146-1]
 gi|306906596|gb|EFN37108.1| tyrosine recombinase XerC [Escherichia coli W]
 gi|307555937|gb|ADN48712.1| integrase/recombinase XerC [Escherichia coli ABU 83972]
 gi|309704246|emb|CBJ03594.1| tyrosine recombinase [Escherichia coli ETEC H10407]
 gi|315063103|gb|ADT77430.1| site-specific tyrosine recombinase [Escherichia coli W]
 gi|315138388|dbj|BAJ45547.1| xerC [Escherichia coli DH1]
 gi|315293146|gb|EFU52498.1| tyrosine recombinase XerC [Escherichia coli MS 153-1]
 gi|315296792|gb|EFU56084.1| tyrosine recombinase XerC [Escherichia coli MS 16-3]
 gi|320185472|gb|EFW60241.1| Tyrosine recombinase XerC [Shigella flexneri CDC 796-83]
 gi|320198482|gb|EFW73083.1| Tyrosine recombinase XerC [Escherichia coli EC4100B]
 gi|323155217|gb|EFZ41401.1| tyrosine recombinase XerC [Escherichia coli EPECa14]
 gi|323161125|gb|EFZ47043.1| tyrosine recombinase XerC [Escherichia coli E128010]
 gi|323173426|gb|EFZ59055.1| tyrosine recombinase XerC [Escherichia coli LT-68]
 gi|323177824|gb|EFZ63408.1| tyrosine recombinase XerC [Escherichia coli 1180]
 gi|323182583|gb|EFZ67987.1| tyrosine recombinase XerC [Escherichia coli 1357]
 gi|323380833|gb|ADX53101.1| tyrosine recombinase XerC [Escherichia coli KO11]
 gi|323934199|gb|EGB30630.1| tyrosine recombinase XerC [Escherichia coli E1520]
 gi|323938947|gb|EGB35166.1| tyrosine recombinase XerC [Escherichia coli E482]
 gi|323943787|gb|EGB39882.1| tyrosine recombinase XerC [Escherichia coli H120]
 gi|324016212|gb|EGB85431.1| tyrosine recombinase XerC [Escherichia coli MS 117-3]
 gi|324111036|gb|EGC05023.1| tyrosine recombinase XerC [Escherichia fergusonii B253]
 gi|324115726|gb|EGC09661.1| tyrosine recombinase XerC [Escherichia coli E1167]
 gi|331036216|gb|EGI08451.1| tyrosine recombinase XerC [Escherichia coli H736]
 gi|331052724|gb|EGI24759.1| tyrosine recombinase XerC [Escherichia coli TA206]
 gi|331062130|gb|EGI34052.1| tyrosine recombinase XerC [Escherichia coli TA271]
 gi|331072468|gb|EGI43800.1| tyrosine recombinase XerC [Escherichia coli H591]
 gi|331077232|gb|EGI48446.1| tyrosine recombinase XerC [Escherichia coli H299]
 gi|332089061|gb|EGI94172.1| tyrosine recombinase XerC [Shigella boydii 3594-74]
 gi|332105033|gb|EGJ08379.1| tyrosine recombinase xerC [Shigella sp. D9]
 gi|332345790|gb|AEE59124.1| tyrosine recombinase XerC [Escherichia coli UMNK88]
          Length = 298

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 89/311 (28%), Positives = 153/311 (49%), Gaps = 17/311 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+      + F +     +  +Q+ +Q   T +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFAS-----ENGLQSWQQCDVTMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHPSITQ 323
           +YD  HP   +
Sbjct: 286 VYDAAHPRAKR 296


>gi|300714802|ref|YP_003739605.1| Tyrosine recombinase XerC [Erwinia billingiae Eb661]
 gi|299060638|emb|CAX57745.1| Tyrosine recombinase XerC [Erwinia billingiae Eb661]
          Length = 302

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 85/313 (27%), Positives = 153/313 (48%), Gaps = 17/313 (5%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
              L    + +L+ L++ER LS LT  +Y+   RQ    LA  TE K+T     +L   +
Sbjct: 4   DSPLQPAVEGFLRYLKVERQLSPLTQINYQ---RQLAACLALLTEMKLT--AWDKLDAAQ 58

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +R+  ++ R   +   SL   LS ++SFL +   + +   +    +   +    LP+ ++
Sbjct: 59  VRSLAARSRRGGLKPASLALRLSALRSFLDWQISQGVLKANPAKGVATPRAPRHLPKNID 118

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             +   L+D  L         +  R+ A+L ++YG GLR+SE + +   ++      + +
Sbjct: 119 VDEVSQLLDIDL------NDPLAVRDRAMLEIMYGAGLRLSELVGIDTGHLDLASGEVWV 172

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG K R +P+  +  + +  + ++   +L       +F    GK ++    Q+   + 
Sbjct: 173 VGKGSKERRLPIGRTAVQWMEHWLEMR--ELFAPEDQAVFLSKYGKRMSARNVQKRFAEW 230

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+      H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++    +
Sbjct: 231 GAKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----L 286

Query: 311 MEIYDQTHPSITQ 323
             +YD  HP   +
Sbjct: 287 ASVYDAAHPRAKR 299


>gi|293376592|ref|ZP_06622820.1| tyrosine recombinase XerD [Turicibacter sanguinis PC909]
 gi|292644818|gb|EFF62900.1| tyrosine recombinase XerD [Turicibacter sanguinis PC909]
          Length = 305

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 93/308 (30%), Positives = 157/308 (50%), Gaps = 14/308 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             ++L +L I+RGLS  T  SYE D  ++L++L     +  ++  + ++    ++ ++  
Sbjct: 9   LNDFLAHLLIDRGLSLNTKISYERDLTEYLLYL-----QNQSVHQLDEIRREHVQQYLIT 63

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + +  +S+ R LS I+SF +YL   KI+  +    + + K    LP  L+  +    
Sbjct: 64  LYERNLNTKSVARHLSAIRSFHQYLMIEKISNTNPCELIESPKLKRHLPEILSIDEVE-- 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               LL + +     D RN A++ L+Y  GLR+SE L L   ++      +R  GKGDK 
Sbjct: 122 ---HLLSSFNTKTVNDIRNKAMVELMYASGLRVSELLQLKLDDVHLSMMFVRCVGKGDKE 178

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RIVP+     + +  Y D     L       LF    G+ +    F + +++  +  G+ 
Sbjct: 179 RIVPIGEVATELLQLYLDTARPKLLKKSNDWLFLNRFGEVMTRQGFWKILKKQAKEAGIE 238

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRHSFATHL+ NG DLR +Q +LGH  +STTQIYT+++ ++    + ++YD  
Sbjct: 239 KEISPHKLRHSFATHLIENGVDLRLVQEMLGHSDISTTQIYTHISKEH----LKDVYDLY 294

Query: 318 HPSITQKD 325
           HP   + D
Sbjct: 295 HPRSQKDD 302


>gi|154686593|ref|YP_001421754.1| site-specific tyrosine recombinase XerD [Bacillus amyloliquefaciens
           FZB42]
 gi|154352444|gb|ABS74523.1| XerD [Bacillus amyloliquefaciens FZB42]
          Length = 296

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 93/309 (30%), Positives = 157/309 (50%), Gaps = 14/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + ++++  + +ERGLS+ T+ SYE D + + +FL     E + I +   ++   I  
Sbjct: 1   MKDQIKDFIHYVRVERGLSQNTMMSYERDLKSYSLFLT----ETLQITSWNDVTRLHIIQ 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++   +      ++  R L+ I+SF ++L + K   +   +++   K   +LP+ L   +
Sbjct: 57  YLKHIKDSGKSGKTSARHLASIRSFHQFLLREKAADKDPSVHIETQKTERTLPKVLALHE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D   L +         R+ A+L LLY  G+R+SE + L   ++      +R  GK
Sbjct: 117 VERLLDTPKLDSP-----FGLRDKAMLELLYATGIRVSEMIELKLSDVHLTMGFVRCFGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K RIVP+  +   AI  Y        L  N+   LF    G+ ++   F + ++++  
Sbjct: 172 GRKERIVPIGEAASHAIEAYIEKARGKLLKKNVTEALFLNHHGRQISRQGFWKNLKKIAL 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    T HTLRHSFATHLL NG DLR++Q +LGH  +STTQIYT+V        + +
Sbjct: 232 EAGIKKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----LKD 287

Query: 313 IYDQTHPSI 321
           +Y Q HP  
Sbjct: 288 VYKQYHPRA 296


>gi|294634844|ref|ZP_06713366.1| tyrosine recombinase XerD [Edwardsiella tarda ATCC 23685]
 gi|291091717|gb|EFE24278.1| tyrosine recombinase XerD [Edwardsiella tarda ATCC 23685]
          Length = 299

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 92/306 (30%), Positives = 149/306 (48%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L +E+ L++ TL SY  D R    +LA++    +T       S  +++ F ++
Sbjct: 9   IEQFLDALWLEKNLAENTLASYRQDLRTLAEWLAYHDLSLLTA------SPGDLQNFFAQ 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++   +YL +  + T+     +   K    LP+ L+E Q   L
Sbjct: 63  RVDGGYKASSSARLLSALRRCYQYLYRETLRTDDPSAQLAAPKLPQRLPKDLSEAQVDAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +             ++ R+ A+L LLY  GLR+SE + L  +++   Q  +R+ GKG+K 
Sbjct: 123 L-----QAPAIDNPLELRDKAMLELLYATGLRVSELVGLGQEDVSLRQGVVRVIGKGNKE 177

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       I  Y     P+ +N      LF   R + +    F   I+      G+
Sbjct: 178 RLVPLGEEAIYWIEYYLEYGRPWLVNGQTVAALFPSNRARQMTRQTFWHRIKHYAVLAGI 237

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 238 DTQRLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 293

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 294 QHHPRA 299


>gi|87307014|ref|ZP_01089160.1| integrase/recombinase [Blastopirellula marina DSM 3645]
 gi|87290387|gb|EAQ82275.1| integrase/recombinase [Blastopirellula marina DSM 3645]
          Length = 300

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 87/312 (27%), Positives = 147/312 (47%), Gaps = 14/312 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +      +L+ L +ER  S LT++SY  D    + +L        +     ++S  ++R 
Sbjct: 1   MRAAADRFLRYLRVERNASDLTIKSYGEDLEALVDYLEELYAAPASTG---EVSTLDLRG 57

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++        + ++ R L+ ++SF ++ ++ ++   S    +RN ++   LP  L   +
Sbjct: 58  YVAAVSDAGYAETTVSRRLASMRSFFRFAQREELIDRSPAKPLRNPRRKRKLPHFLTGDE 117

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                 + LL           R+ AI    Y  GLR+SE + L   +I  +Q  +RI+GK
Sbjct: 118 I-----SKLLSAPPANTSAGLRDRAIFETTYSAGLRVSELVGLNDSDIDAEQGLIRIRGK 172

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPF--DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G + R+ PL     KA+ ++              + P+F    G  L      R + +  
Sbjct: 173 GKRERLGPLGSYAIKALHDWLSQRTLSARAAAAKEKPVFTNKFGNRLTTRSVGRMLEKYI 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              GL   T+ HTLRHSFATHLL  G D+RS+Q +LGH  L TTQIYT+V++      + 
Sbjct: 233 AIAGLDTRTSPHTLRHSFATHLLDAGADIRSVQELLGHKSLVTTQIYTHVSTTR----LK 288

Query: 312 EIYDQTHPSITQ 323
           E Y++ HP   +
Sbjct: 289 EAYEKAHPRAQR 300


>gi|126435536|ref|YP_001071227.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. JLS]
 gi|126235336|gb|ABN98736.1| tyrosine recombinase XerD subunit [Mycobacterium sp. JLS]
          Length = 318

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 88/319 (27%), Positives = 148/319 (46%), Gaps = 19/319 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
            L  + Q +L +L IERG++  TL SY  D R++   L         ++ + +++ +++ 
Sbjct: 10  ALDDQLQGYLDHLTIERGVAANTLSSYRRDLRRYSEHLTGR-----GVEDLAKVTESDVS 64

Query: 73  AFISKRR-------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
            F+   R        Q +   S  R+L  ++   ++     +T       ++       L
Sbjct: 65  DFLVALRRGDPDTGAQALSAVSAARALIAVRGLHRFATAEGLTDVDVARAVKPPTPGRRL 124

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P++L+  + L L+D      S     +  RN A+L LLY  G RISEA+ L   ++    
Sbjct: 125 PKSLSIDEVLALLD-GAGGDSEADGPLTLRNRALLELLYSTGARISEAVGLDIDDVDTHA 183

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVF 243
            ++ ++GKG K R+VP+      A+  Y      DL    +    +F   RG  L+    
Sbjct: 184 RSVLLRGKGGKQRLVPIGRPAVSALDAYLVRGRPDLARRGRGTPAIFLNARGGRLSRQSA 243

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            + ++      G+  + + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V  
Sbjct: 244 WQVLQDAADRAGITSAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVT- 302

Query: 304 KNGGDWMMEIYDQTHPSIT 322
                 + E++   HP   
Sbjct: 303 ---VHALREVWAGAHPRAR 318


>gi|70728483|ref|YP_258232.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens
           Pf-5]
 gi|68342782|gb|AAY90388.1| tyrosine recombinase XerD [Pseudomonas fluorescens Pf-5]
          Length = 298

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 94/304 (30%), Positives = 148/304 (48%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GLS  T  +Y  D   F  +L     E      + +     I   ++ 
Sbjct: 9   IDRFLDALWLEKGLSDNTRDAYRSDLALFNGWLQEQGLE------LPRAGRELILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  Q    RS  R LSG++ F +YL + K+      L +   +    LP++L+E     L
Sbjct: 63  RVEQAYKPRSTARFLSGVRGFYRYLLREKLIEIDPTLQIDMPQLGRPLPKSLSEADVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +          ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K 
Sbjct: 123 L-----AAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y      +L        LF  +RG+ +    F   I+   +  G+
Sbjct: 178 RLVPMGEEAIVWVERYMRDARAELLGGRPSDVLFPSLRGEQMTRQTFWHRIKHQAKVAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + +++ +
Sbjct: 238 GKALSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHV----ARARLQDLHAK 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|125973194|ref|YP_001037104.1| tyrosine recombinase XerD subunit [Clostridium thermocellum ATCC
           27405]
 gi|125713419|gb|ABN51911.1| tyrosine recombinase XerD subunit [Clostridium thermocellum ATCC
           27405]
          Length = 296

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 97/303 (32%), Positives = 156/303 (51%), Gaps = 16/303 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L+ ++ LS  TLQSY+ D  Q++ +L     + + IQ I   + T + A++   +
Sbjct: 9   HFLDFLKNDKRLSLNTLQSYKRDIEQYITYL-----KDMKIQNIANTNKTTVIAYLLHLQ 63

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +     ++ R+L+ I+SF +YL K+ I ++    N+ + K    LP+ L+ K+   L++
Sbjct: 64  KKGRATSTISRNLASIRSFYQYLTKKGIISQDPTENLESPKVEKKLPQILSTKEVELLLE 123

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                          R+ A+L LLY  G+R+SE +SL   ++  +   +R   KG + RI
Sbjct: 124 Q-----PKCDDLKGYRDKAMLELLYATGIRVSELISLDLDDVNLEMQYIRCN-KGARERI 177

Query: 200 VPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+      A+ EY        +    +  LF  + GK L    F + I+Q +    +  
Sbjct: 178 VPIGSVSVNALQEYLTKSRNLLIQRPDEKALFVNVNGKRLTRQGFWKIIKQYKNQAKINK 237

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             T HTLRHSFA HLL NG DLRSIQ +LGH  +S+TQIY  +      + + EIY +TH
Sbjct: 238 DITPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQL----AKNRIKEIYKKTH 293

Query: 319 PSI 321
           P  
Sbjct: 294 PRA 296


>gi|319780736|ref|YP_004140212.1| tyrosine recombinase XerC [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166624|gb|ADV10162.1| tyrosine recombinase XerC [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 312

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 142/322 (44%), Positives = 192/322 (59%), Gaps = 11/322 (3%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+   +P     +L   R++WL+ L  ER LS  T+++YE DTRQFL FL  +      I
Sbjct: 1   MQEFLIP--AKPDLQAARESWLKMLARERRLSPETVEAYERDTRQFLHFLTGHCGGSPGI 58

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             I  L   ++R F++ RR    G R+L R L+GI+S L++L++R +   +    +R  +
Sbjct: 59  SDIADLRPADLRGFLAARRNGGAGARTLGRGLAGIRSLLRFLERRGLANAAGAAALRAPR 118

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +  SLP+ L    A  +V   +     E  WI ARN+A+L LLYG GLRISEAL L   +
Sbjct: 119 QPKSLPKPLTASDAKHIV--SIEGQLAEEPWIAARNAAVLTLLYGSGLRISEALGLAGAD 176

Query: 181 IMDDQST-LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           +     T LR+ GKG K R+VP+LP   +AI EY  LCP+ L+      LFRG RG PLN
Sbjct: 177 LASAADTVLRVAGKGGKTRLVPVLPVALRAIAEYRRLCPYHLDPKGL--LFRGARGGPLN 234

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           P + QR + +LR  L LP + T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQIYT
Sbjct: 235 PAIVQRDMAKLRSALNLPDTATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQIYT 294

Query: 300 NVNSKNGGDWMMEIYDQTHPSI 321
            V++      ++EIY+Q HP  
Sbjct: 295 GVDTAR----LLEIYEQAHPRA 312


>gi|312903284|ref|ZP_07762464.1| tyrosine recombinase XerD [Enterococcus faecalis TX0635]
 gi|310633160|gb|EFQ16443.1| tyrosine recombinase XerD [Enterococcus faecalis TX0635]
          Length = 296

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 93/310 (30%), Positives = 165/310 (53%), Gaps = 16/310 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++  ++L  L+IERGLS  T +SYE D ++++ FL     ++  + +  ++    I  
Sbjct: 1   MEEQLVDYLHYLQIERGLSNNTRRSYERDLKKYVAFL-----QEQGLHSWDEVDRYMITE 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+     ++    S+ R +S ++ F ++L++ +++  + + ++ + KK   LP  L+  +
Sbjct: 56  FLQSLHEEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++     T   +K +  RN AIL ++Y  GLR+SE + +   ++      L+  GK
Sbjct: 116 VTRLIE-----TPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GDK RI+PL     + I  Y +     L  N   +  LF    G+PL+     + ++++ 
Sbjct: 171 GDKERIIPLGDYAIQWIERYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKRIV 230

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R   +  + T HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT++  +     M 
Sbjct: 231 REARIEKNITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQR----MA 286

Query: 312 EIYDQTHPSI 321
           ++Y +  P  
Sbjct: 287 DVYKEHFPRA 296


>gi|237729834|ref|ZP_04560315.1| site-specific tyrosine recombinase XerD [Citrobacter sp. 30_2]
 gi|226908440|gb|EEH94358.1| site-specific tyrosine recombinase XerD [Citrobacter sp. 30_2]
          Length = 298

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 92/309 (29%), Positives = 151/309 (48%), Gaps = 17/309 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L  L +ER L++ TL +Y  D    + +L        T Q+       +++A 
Sbjct: 5   LARIEQFLDALWLERNLAENTLSAYRRDLTMLVEWLHHRGASLATAQS------DDLQAL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R        S  R LS  + F ++L + K   +    ++ + K    LP+ L+E Q 
Sbjct: 59  LAERMDGGYKATSSARLLSATRRFFQHLYREKYREDDPSASLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+   L+        ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG
Sbjct: 119 ERLLQAPLIEQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y     P+ LN      LF   R + +    F   I+     
Sbjct: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHPSI 321
           ++ Q HP  
Sbjct: 290 LHQQHHPRA 298


>gi|212710035|ref|ZP_03318163.1| hypothetical protein PROVALCAL_01088 [Providencia alcalifaciens DSM
           30120]
 gi|212687242|gb|EEB46770.1| hypothetical protein PROVALCAL_01088 [Providencia alcalifaciens DSM
           30120]
          Length = 300

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 96/314 (30%), Positives = 155/314 (49%), Gaps = 17/314 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + S +L    + +L  + +E+ L++ TL SY  D +    +L        T+Q+I     
Sbjct: 1   MESKQLNPLIEQFLDTIWLEQDLAENTLASYRNDLQSLDRWLDKQQLHLETVQSI----- 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++++F+++R        S  R LS I+   +Y  + KI ++     +   K    LP+ 
Sbjct: 56  -DLQSFLAERIDGGYKAASSARLLSSIRRLFQYFYREKIRSDDPSAVIAAPKIPQRLPKD 114

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+EKQ   L+     +       ++ R+ A+L +LY CGLR+SE   LT  +I   Q  +
Sbjct: 115 LSEKQVEDLL-----NAPATEDSLELRDKAMLEVLYACGLRVSELTGLTFSDISLRQGVV 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYI 247
           R+ GKGDK R++PL       + +Y      DL N      LF   RG  +    F   I
Sbjct: 170 RVVGKGDKERLIPLGEEAIYWLEKYIAEGRPDLLNGKTSDVLFPSKRGTKMTRQTFWHRI 229

Query: 248 RQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +       +     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++  
Sbjct: 230 KYYAVLANIDGEALSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER- 288

Query: 307 GDWMMEIYDQTHPS 320
              +  +++Q HP 
Sbjct: 289 ---LRALHEQHHPR 299


>gi|84393959|ref|ZP_00992699.1| tyrosine recombinase [Vibrio splendidus 12B01]
 gi|84375403|gb|EAP92310.1| tyrosine recombinase [Vibrio splendidus 12B01]
          Length = 304

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 94/306 (30%), Positives = 149/306 (48%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + +ERGLS+ TL SY  D  + L ++            +  +S + ++ +   
Sbjct: 14  VEQFLDAMWMERGLSENTLVSYRTDLSKLLTWMEKNNYR------LDFISLSGLQDYQGW 67

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    S  R LS I+   +YL + K+  +     + + K    LP+ L+E+Q   L
Sbjct: 68  LADADFKQTSRARMLSAIRRLFQYLHREKVRGDDPSALLISPKLPQRLPKDLSEEQVNAL 127

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++            I+ R+ A+L LLY  GLR++E +SLT +NI   Q  +R+ GKG K 
Sbjct: 128 LE-----APDPNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGKE 182

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +    I  + +   P  L  N    +F   R K +    F   I+      G+
Sbjct: 183 RLVPMGENAVDWIETFIEQGRPQLLGENSSDVVFPSKRAKQMTRQTFWYRIKHYSVVAGI 242

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +I+ 
Sbjct: 243 DTELLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIHA 298

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 299 QHHPRA 304


>gi|242242770|ref|ZP_04797215.1| tyrosine recombinase XerD [Staphylococcus epidermidis W23144]
 gi|242233906|gb|EES36218.1| tyrosine recombinase XerD [Staphylococcus epidermidis W23144]
          Length = 295

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 150/305 (49%), Gaps = 15/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  ++IE+GLS  T+ +Y  D +++  +L     E   I  I  +    I+  +  
Sbjct: 5   IDEYLNFIQIEKGLSNNTIGAYRRDLKKYKDYL-----EDNKISHIDFIDRQIIQECLGH 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                   +SL R +S I+SF ++  + K   +   + +   K    LP  L   + + L
Sbjct: 60  LIDMGQSSKSLARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEIDEVIAL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++     T    K    R+  +L LLY  G+R++E + L  +++      +R+ GKG+K 
Sbjct: 120 LE-----TPDLAKNNGYRDRTMLELLYATGMRVTEIIQLDVEDVNLMMGFVRVFGKGNKE 174

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVPL  +V + +  Y   + P  L       LF  + GK L+     + I+Q      +
Sbjct: 175 RIVPLGDTVIEYLTTYIETVRPQLLKQTTTQALFLNMHGKSLSRQGIWKIIKQYGLKANI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y Q
Sbjct: 235 NKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYTQ 290

Query: 317 THPSI 321
            HP  
Sbjct: 291 FHPRA 295


>gi|288941805|ref|YP_003444045.1| tyrosine recombinase XerC [Allochromatium vinosum DSM 180]
 gi|288897177|gb|ADC63013.1| tyrosine recombinase XerC [Allochromatium vinosum DSM 180]
          Length = 320

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 92/323 (28%), Positives = 160/323 (49%), Gaps = 13/323 (4%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           + P   +       + +L +L  ER LS+ T+++Y  D  Q  ++LA   E     + I 
Sbjct: 6   DAPAAPTSIDTPRIERFLAHLAHERQLSEHTVRAYRHDLNQIAVWLADQGE--PGAEPIA 63

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            L    IR + + R  Q +  ++L+R LS ++ F ++L +      +  + +R  K    
Sbjct: 64  SLDEAGIRRYTAWRHRQGVSGKTLQRELSSLRGFYRWLLRENQAVANPAVGLRAPKSPRK 123

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP   +  Q   L+D        +   +  R++A++ L Y  GLR++E +S+   +I   
Sbjct: 124 LPHTFDADQLGALLD------PVDEDPLMIRDTAMVELFYSSGLRLAELVSIDLGDIDMS 177

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           +  L + GKG K R VP+    R+AI  +  +    L    +  LF  +RG  ++P   +
Sbjct: 178 EGELGVIGKGSKSRRVPVGRKAREAIERWLAVRS-ALADRDERALFVSLRGGRIHPRTVE 236

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + + +     G       H LRHSFA+HLL + GDLR++Q +LGH  + TTQIYT+++ +
Sbjct: 237 KRLARWAVERGASRHLHPHLLRHSFASHLLESSGDLRAVQELLGHTDIGTTQIYTHLDFQ 296

Query: 305 NGGDWMMEIYDQTHPSITQKDKK 327
           +    + ++YDQ HP   +K  K
Sbjct: 297 H----LAQVYDQAHPRARKKASK 315


>gi|330950740|gb|EGH51000.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae Cit
           7]
          Length = 298

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 97/304 (31%), Positives = 143/304 (47%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GLS  T  SY  D   F  +L     + I+           I   ++ 
Sbjct: 9   IDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLISA------GREVILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R       RS  R LSG + F +YL + K+ +    L +   +    LP++L+E     L
Sbjct: 63  RVENAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L     ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K 
Sbjct: 123 -----LAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y        L       LF   RG  +    F   I+      G+
Sbjct: 178 RLVPMGEESIVWVERYLRGARDELLGGKPSDVLFPSSRGDQMTRQTFWHRIKHQATVAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ +
Sbjct: 238 GKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHV----ARARLQELHAK 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|326803729|ref|YP_004321547.1| tyrosine recombinase XerD [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651687|gb|AEA01870.1| tyrosine recombinase XerD [Aerococcus urinae ACS-120-V-Col10a]
          Length = 299

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 93/307 (30%), Positives = 158/307 (51%), Gaps = 17/307 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L  L +E+GLS+ T+++Y     QF + L+     +  I+ I+ +   +I   +  
Sbjct: 7   IEDFLIALRVEQGLSENTIKTYHNVLNQFQMILS-----EAGIEDIQAVKRQDIIQQLEN 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     ++ + LS ++ F KYL    +  E+ + N+   KK   LP+ L+ ++   L
Sbjct: 62  LNQKGRAVSTMSQYLSTLRHFFKYLILDSVIEENPVENISLPKKKQQLPQVLSVEEVDRL 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++            +  R+ ++L LLY  GLR+SE + L   +  +D   L+  GKG+K 
Sbjct: 122 LEM-----PDVNSTLGLRDRSLLELLYASGLRVSELVHLKISDFHEDLGFLQTIGKGNKE 176

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           RI+PL    +  +  Y       L   N   Q  ++    G+PL+     + ++Q  +  
Sbjct: 177 RIIPLGEVAKDWLQTYLKESRLKLLGENDQSQGMIYLNHHGRPLSRQGVWKKLKQYIQAA 236

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+    + HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT+++S++    M EIY
Sbjct: 237 GITKEVSPHTLRHSFATHLLENGADLRVVQELLGHADISTTQIYTHIHSQH----MREIY 292

Query: 315 DQTHPSI 321
            +T P  
Sbjct: 293 KKTFPRA 299


>gi|283835346|ref|ZP_06355087.1| tyrosine recombinase XerD [Citrobacter youngae ATCC 29220]
 gi|291068511|gb|EFE06620.1| tyrosine recombinase XerD [Citrobacter youngae ATCC 29220]
          Length = 298

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 92/309 (29%), Positives = 151/309 (48%), Gaps = 17/309 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L  L +ER L++ TL +Y  D    + +L        T Q+       +++A 
Sbjct: 5   LARIEQFLDALWLERNLAENTLSAYRRDLSMLVEWLHHRGVSLATAQS------DDLQAL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R        S  R LS  + F ++L + K   +    ++ + K    LP+ L+E Q 
Sbjct: 59  LAERMDGGYKATSSARLLSATRRFFQHLYREKYREDDPSASLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+   L+        ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG
Sbjct: 119 ERLLQAPLIEQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y     P+ LN      LF   R + +    F   I+     
Sbjct: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHPSI 321
           ++ Q HP  
Sbjct: 290 LHQQHHPRA 298


>gi|312962849|ref|ZP_07777336.1| integrase/recombinase XerD [Pseudomonas fluorescens WH6]
 gi|311282876|gb|EFQ61470.1| integrase/recombinase XerD [Pseudomonas fluorescens WH6]
          Length = 298

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 97/304 (31%), Positives = 149/304 (49%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GLS  T Q+Y  D   F  +L     E I            I   ++ 
Sbjct: 9   IDRFLDALWLEKGLSDNTRQAYRSDLALFNGWLQEKHLELINA------GRELILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  Q    RS  R LSG++ F +YL + K+ T    L +   +    LP++L+E     L
Sbjct: 63  RLEQNYKPRSTARFLSGVRGFYRYLLREKLITLDPTLQIDMPQLGRPLPKSLSEADVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +          ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K 
Sbjct: 123 L-----AAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y      +L        LF  +RG+ +    F   I+   +  G+
Sbjct: 178 RLVPMGEEAIVWVERYMREARSELLGGRPSDVLFPSLRGEQMTRQTFWHRIKHQAKVAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + +++ +
Sbjct: 238 GKTLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHV----ARARLQDMHAK 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|330975463|gb|EGH75529.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 298

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 97/304 (31%), Positives = 143/304 (47%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GLS  T  SY  D   F  +L     + I+           I   ++ 
Sbjct: 9   IDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLISA------GREVILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R       RS  R LSG + F +YL + K+ +    L +   +    LP++L+E     L
Sbjct: 63  RVENAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L     ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K 
Sbjct: 123 -----LAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y        L       LF   RG  +    F   I+      G+
Sbjct: 178 RLVPMGEESIVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ +
Sbjct: 238 GKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHV----ARARLQELHAK 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|110807498|ref|YP_691018.1| site-specific tyrosine recombinase XerC [Shigella flexneri 5 str.
           8401]
 gi|123342340|sp|Q0SZ02|XERC_SHIF8 RecName: Full=Tyrosine recombinase xerC
 gi|110617046|gb|ABF05713.1| tyrosine recombinase [Shigella flexneri 5 str. 8401]
          Length = 298

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 88/311 (28%), Positives = 152/311 (48%), Gaps = 17/311 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+      + F +     +  +Q+ +Q     +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFAS-----ENGLQSWQQCDAAMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRHKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHPSITQ 323
           +YD  HP   +
Sbjct: 286 VYDAAHPRAKR 296


>gi|306815150|ref|ZP_07449303.1| site-specific tyrosine recombinase XerC [Escherichia coli NC101]
 gi|305851519|gb|EFM51973.1| site-specific tyrosine recombinase XerC [Escherichia coli NC101]
          Length = 298

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 89/311 (28%), Positives = 153/311 (49%), Gaps = 17/311 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+      + F +     +  +Q+ +Q   T +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFAS-----ENGLQSWQQCDVTMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DMSRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHPSITQ 323
           +YD  HP   +
Sbjct: 286 VYDAAHPRAKR 296


>gi|308187997|ref|YP_003932128.1| Tyrosine recombinase xerD [Pantoea vagans C9-1]
 gi|308058507|gb|ADO10679.1| Tyrosine recombinase xerD [Pantoea vagans C9-1]
          Length = 297

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L IER L++ TL SY  D +    +L  +        T+  ++  +++ F+++R
Sbjct: 8   EQFLDALWIERNLAQNTLSSYRQDLQTLTGWLTHHQ------LTLLSVTPLDLQQFLAER 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S  R LS ++   +YL + K+  +     +   K    LP+ L+E Q   L+
Sbjct: 62  LEGGYKATSSARLLSAMRRLFQYLYREKLRPDDPSALLSAPKLPQRLPKDLSEAQVERLL 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                        ++ R+ A+L +LY  GLR+SE   LT  +I   Q  +R+ GKGDK R
Sbjct: 122 -----QAPDTNIPLELRDKAMLEVLYATGLRVSELTGLTLSDISLRQGVVRVIGKGDKER 176

Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VPL       + +Y     P+ LN      +F   R + +    F   I+      G+ 
Sbjct: 177 LVPLGEEAVYWLEQYMEHGRPWLLNGQTLDVMFPSNRAQQMTRQTFWHRIKHYATLAGID 236

Query: 258 -LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H +RH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q
Sbjct: 237 SEKLSPHVMRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQ 292

Query: 317 THPSI 321
            HP  
Sbjct: 293 HHPRA 297


>gi|299538357|ref|ZP_07051640.1| tyrosine recombinase xerD [Lysinibacillus fusiformis ZC1]
 gi|298725944|gb|EFI66536.1| tyrosine recombinase xerD [Lysinibacillus fusiformis ZC1]
          Length = 300

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 97/311 (31%), Positives = 152/311 (48%), Gaps = 15/311 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E     ++++  +++ER LS  TL SY  D   ++ FL     E   +     +  T I 
Sbjct: 3   EFQYAVEDYIHFIQVERQLSVNTLASYRRDLESYVHFLK----EAEGMSDFSVVERTTIL 58

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
             + + R Q    R++ R +S I+SF ++L + K       +++        LP  L+ +
Sbjct: 59  RHLEQLRAQGKTSRTVARHISSIRSFHQFLLREKRAETDPTVHLEMPTIEQKLPNILSIE 118

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L+        +++K    R+ A+L LLYG G+RISE ++L   +I      +R+ G
Sbjct: 119 EIEALL-----TAPNKSKPQGIRDLAMLELLYGSGMRISELIALDLADIHLTMGFVRVFG 173

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQL 250
           KG K RI+PL  S   AI  Y +     L          F   RGK L      + +++ 
Sbjct: 174 KGGKERIIPLGKSALSAINAYLNGARGQLQGKYPKTDAFFINQRGKRLTRQGCWKLMKEH 233

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+    T HTLRHSFATHL+ NG DLR++Q +LGH  +STTQIYT+++       +
Sbjct: 234 ALKAGIQHELTPHTLRHSFATHLVENGADLRAVQEMLGHADISTTQIYTHISKTR----L 289

Query: 311 MEIYDQTHPSI 321
            E+Y Q HP  
Sbjct: 290 SEVYKQFHPRA 300


>gi|296394928|ref|YP_003659812.1| tyrosine recombinase XerD [Segniliparus rotundus DSM 44985]
 gi|296182075|gb|ADG98981.1| tyrosine recombinase XerD [Segniliparus rotundus DSM 44985]
          Length = 306

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 84/312 (26%), Positives = 140/312 (44%), Gaps = 16/312 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           + Q +L +L +ERG SK T  SY  D  ++  FL      + ++  + Q++  ++  F++
Sbjct: 4   QVQQYLDHLAVERGASKHTTASYRRDLGRYADFL-----RQRSVADLAQVTSAQVAEFLA 58

Query: 77  KRRT---QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             R      +   S  R LS ++   ++     +  +     ++  +    LP+AL   Q
Sbjct: 59  WSRDPAGMGLAQSSAARGLSAVRGLHRFAVLEGMVAQDVAHGVKPPQPGRRLPKALPVDQ 118

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
            + +++   +  +        R+ A+L L+Y  G R+SEA+ L   ++     + R+ GK
Sbjct: 119 VIAILEASGIADAESDVPRALRDQALLELMYCTGCRVSEAVGLNLADVDVPSRSARVLGK 178

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPF----DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           GDK R+VPL  +   A+  Y                   LF   RG   +       +R 
Sbjct: 179 GDKERLVPLGSAALAAVEAYLVRGRPAFLAQRAGKATNALFLNARGARFSRQSAWASLRH 238

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+    + HTLRHS ATHLL  G D+R +Q +LGH  + TTQIYT V+       
Sbjct: 239 AAAKAGVQAEISPHTLRHSCATHLLEGGADVRVVQELLGHASVVTTQIYTMVS----ATT 294

Query: 310 MMEIYDQTHPSI 321
           + E+Y   HP  
Sbjct: 295 LREVYATAHPRA 306


>gi|78222639|ref|YP_384386.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15]
 gi|78193894|gb|ABB31661.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15]
          Length = 295

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 93/301 (30%), Positives = 146/301 (48%), Gaps = 15/301 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +E+GL+K +L SY  D  ++L FL     EK        +   ++  F++  + 
Sbjct: 8   FLNYLLVEKGLAKNSLDSYGRDMIRYLDFL-----EKRNCGEPSAVRPVDVADFLAHLKD 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS  R+LS ++ F ++L        +    +   K    LP+ L  ++   L   
Sbjct: 63  CGLAPRSRARALSAVRMFHRFLLVEGYAEANPTAIIEAPKTLAKLPQILAGREVEAL--- 119

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L         D R+ A+L LLY  GLR+SE + L  +++      L   GKG K R+V
Sbjct: 120 --LAAPGSDSAQDMRDRAMLELLYATGLRVSELVGLGLRDVNVTAGYLMAFGKGGKERLV 177

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+  S   A+  Y      +++ N     LF    G  +    F   I++     G+  +
Sbjct: 178 PMGESACAAVSRYLAEARPEMDRNGDNAYLFLTRLGDRMTRQAFWNIIKKRAIEAGIRKT 237

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRHSFATHLL NG DLRS+Q++LGH  L+TTQIYT+V  +     +  I+++ HP
Sbjct: 238 ISPHTLRHSFATHLLENGADLRSVQAMLGHADLATTQIYTHVTRER----LKRIHEEYHP 293

Query: 320 S 320
            
Sbjct: 294 R 294


>gi|15804400|ref|NP_290440.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7
           EDL933]
 gi|15833995|ref|NP_312768.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7
           str. Sakai]
 gi|168750377|ref|ZP_02775399.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4113]
 gi|168753708|ref|ZP_02778715.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4401]
 gi|168763936|ref|ZP_02788943.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4501]
 gi|168768092|ref|ZP_02793099.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4486]
 gi|168775638|ref|ZP_02800645.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4196]
 gi|168780710|ref|ZP_02805717.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4076]
 gi|168801125|ref|ZP_02826132.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC508]
 gi|195938100|ref|ZP_03083482.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7
           str. EC4024]
 gi|208806813|ref|ZP_03249150.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4206]
 gi|208813099|ref|ZP_03254428.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4045]
 gi|208821301|ref|ZP_03261621.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4042]
 gi|209397621|ref|YP_002273328.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4115]
 gi|217326194|ref|ZP_03442278.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. TW14588]
 gi|254795807|ref|YP_003080644.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7
           str. TW14359]
 gi|261225585|ref|ZP_05939866.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255631|ref|ZP_05948164.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291285225|ref|YP_003502043.1| Tyrosine recombinase xerC [Escherichia coli O55:H7 str. CB9615]
 gi|34222932|sp|Q8X4T6|XERC_ECO57 RecName: Full=Tyrosine recombinase xerC
 gi|254799334|sp|B5YY58|XERC_ECO5E RecName: Full=Tyrosine recombinase xerC
 gi|12518679|gb|AAG59004.1|AE005612_7 site-specific recombinase, acts on cer sequence of ColE1, effects
           chromosome segregation at cell division [Escherichia
           coli O157:H7 str. EDL933]
 gi|13364217|dbj|BAB38164.1| site-specific recombinase XerC [Escherichia coli O157:H7 str.
           Sakai]
 gi|187768906|gb|EDU32750.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4196]
 gi|188015455|gb|EDU53577.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4113]
 gi|189001561|gb|EDU70547.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4076]
 gi|189358976|gb|EDU77395.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4401]
 gi|189362670|gb|EDU81089.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4486]
 gi|189365973|gb|EDU84389.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4501]
 gi|189376684|gb|EDU95100.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC508]
 gi|208726614|gb|EDZ76215.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4206]
 gi|208734376|gb|EDZ83063.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4045]
 gi|208741424|gb|EDZ89106.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4042]
 gi|209159021|gb|ACI36454.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4115]
 gi|209753248|gb|ACI74931.1| putative phosphatase [Escherichia coli]
 gi|209753250|gb|ACI74932.1| putative phosphatase [Escherichia coli]
 gi|209753252|gb|ACI74933.1| putative phosphatase [Escherichia coli]
 gi|209753254|gb|ACI74934.1| putative phosphatase [Escherichia coli]
 gi|209753256|gb|ACI74935.1| putative phosphatase [Escherichia coli]
 gi|217322415|gb|EEC30839.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. TW14588]
 gi|254595207|gb|ACT74568.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str.
           TW14359]
 gi|290765098|gb|ADD59059.1| Tyrosine recombinase xerC [Escherichia coli O55:H7 str. CB9615]
 gi|320191096|gb|EFW65746.1| Tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC1212]
 gi|320639294|gb|EFX08916.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7
           str. G5101]
 gi|320644679|gb|EFX13729.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H-
           str. 493-89]
 gi|320650004|gb|EFX18507.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H-
           str. H 2687]
 gi|320655350|gb|EFX23292.1| site-specific tyrosine recombinase XerC [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320660976|gb|EFX28419.1| site-specific tyrosine recombinase XerC [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320666100|gb|EFX33114.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7
           str. LSU-61]
 gi|326344267|gb|EGD68027.1| Tyrosine recombinase XerC [Escherichia coli O157:H7 str. 1125]
 gi|326347905|gb|EGD71619.1| Tyrosine recombinase XerC [Escherichia coli O157:H7 str. 1044]
          Length = 298

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 88/311 (28%), Positives = 151/311 (48%), Gaps = 17/311 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+      + F +     +  +Q  +Q     +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFAS-----ENGLQNWQQCDAAMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKTPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DINRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNALSWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHPSITQ 323
           +YD  HP   +
Sbjct: 286 VYDAAHPRAKR 296


>gi|194434030|ref|ZP_03066300.1| tyrosine recombinase XerC [Shigella dysenteriae 1012]
 gi|194417688|gb|EDX33787.1| tyrosine recombinase XerC [Shigella dysenteriae 1012]
 gi|320178102|gb|EFW53082.1| Tyrosine recombinase XerC [Shigella boydii ATCC 9905]
 gi|332084672|gb|EGI89860.1| tyrosine recombinase XerC [Shigella boydii 5216-82]
 gi|332084963|gb|EGI90145.1| tyrosine recombinase XerC [Shigella dysenteriae 155-74]
          Length = 298

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 88/311 (28%), Positives = 152/311 (48%), Gaps = 17/311 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+      + F +     +  ++  +Q   T +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFAS-----ENGLKNWQQCDVTMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHPSITQ 323
           +YD  HP   +
Sbjct: 286 VYDAAHPRAKR 296


>gi|320323174|gb|EFW79263.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329555|gb|EFW85544.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 298

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 95/304 (31%), Positives = 141/304 (46%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GLS  T  SY  D   F  +L            +       I   ++ 
Sbjct: 9   IDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERN------VDLPSAGREVILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R       RS  R LSG + F +YL + K+ +    L +   +    LP++L+E     L
Sbjct: 63  RVENAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L     ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K 
Sbjct: 123 -----LAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y        L       LF   RG  +    F   I+      G+
Sbjct: 178 RLVPMGEEAIVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT++        + E++ +
Sbjct: 238 GKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHL----ARARLQELHAK 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|145224084|ref|YP_001134762.1| site-specific tyrosine recombinase XerD [Mycobacterium gilvum
           PYR-GCK]
 gi|145216570|gb|ABP45974.1| tyrosine recombinase XerD [Mycobacterium gilvum PYR-GCK]
          Length = 314

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 85/318 (26%), Positives = 148/318 (46%), Gaps = 19/318 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L  + Q +L +L IERG++  TL SY  D R++   L         +  +  ++ T++  
Sbjct: 7   LDGQLQGYLDHLAIERGVAANTLSSYRRDLRRYAEHLKAR-----GVGDLAAVTETDVSE 61

Query: 74  FISKRRTQK-------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           F+   R          +   S  R+L  ++   ++     I       +++    S  LP
Sbjct: 62  FLVALRLGDPDGGVVPLSAVSAARALIAVRGLHRFAAAEGIAAIDVARDVKPPTPSRRLP 121

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           ++L+  + L L++     +  ++  +  RN A+L LLY  G RISEA+ L   ++     
Sbjct: 122 KSLSIDEVLALLEAAGGDSEADS-PLTLRNRALLELLYSTGARISEAVGLDIDDVDTSAR 180

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQ 244
           ++ ++GKG K R++P+      A+  Y      DL    +    +F   RG  L+     
Sbjct: 181 SVLLRGKGGKQRLIPIGRPAVTALETYLVRGRPDLARRGRGTPAIFLNARGGRLSRQSAW 240

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + ++      G+  + + H LRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V   
Sbjct: 241 QVLQDAAGRAGVTATVSPHVLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVT-- 298

Query: 305 NGGDWMMEIYDQTHPSIT 322
              + + E++   HP   
Sbjct: 299 --VNALREVWAGAHPRAR 314


>gi|297539666|ref|YP_003675435.1| tyrosine recombinase XerD [Methylotenera sp. 301]
 gi|297259013|gb|ADI30858.1| tyrosine recombinase XerD [Methylotenera sp. 301]
          Length = 302

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 93/312 (29%), Positives = 161/312 (51%), Gaps = 17/312 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S + L E   ++ +L +E GLSK TL+SY  D   F  +L    ++ +T      +   
Sbjct: 6   LSPQDLAELDTFIDHLWLEDGLSKNTLESYRLDLTSFAYWLTPQNKQLLT------VDQA 59

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +I+ +++ +  Q    RS+ R ++ ++ F +YL +    +    + +++ K   SLP++L
Sbjct: 60  DIQQYLAVKFPQS-QPRSISRLIASMRRFYRYLMRDNKISLDPTIQIQSPKLPRSLPKSL 118

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           NE++ + L+     +  +  +    R+ A+L LLY CGLR+SE + +    +      +R
Sbjct: 119 NEEEVIALL-----NAPNIVEAAGLRDRAMLELLYACGLRVSELVGVKVTEVSVSDGVVR 173

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           I GKG K R+VP+       I  Y  D     L   +   LF   RG+ +    F   I+
Sbjct: 174 ITGKGSKTRLVPMGEEAVDWISRYLSDARSAILQKRLCDALFVTNRGEAMTRQAFWYLIK 233

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     G+    + H LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +    
Sbjct: 234 RYALLAGINKHMSPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARER--- 290

Query: 309 WMMEIYDQTHPS 320
            + +++ + HP 
Sbjct: 291 -LKQLHHKHHPR 301


>gi|301063083|ref|ZP_07203644.1| tyrosine recombinase XerD [delta proteobacterium NaphS2]
 gi|300442803|gb|EFK07007.1| tyrosine recombinase XerD [delta proteobacterium NaphS2]
          Length = 293

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 92/308 (29%), Positives = 145/308 (47%), Gaps = 17/308 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +      ++  L +ERGL++ T+ +Y  D  +F+ +L       +        S T IR 
Sbjct: 1   MYDLIDEFITYLRVERGLAENTVHAYSRDLIRFVAYLENRNITPV------DCSRTAIRD 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++    T ++  RS  R++S IK+F ++L       E+    +   +    LP  L+  +
Sbjct: 55  YLGTL-THELSKRSRARNVSAIKTFYRFLVSEGKMEENPARLVETPRIQQKLPDILSVDE 113

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+             I  R+ A+L LLY  GLR+SE + L   ++  +   ++  GK
Sbjct: 114 VERLL-----LQPDGATPIGQRDRAMLELLYATGLRVSELVRLRLLDVNMEAGFVKALGK 168

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRR 252
           G K R+VP     R+A+  Y       L      P LF   RGKPL    F + I+    
Sbjct: 169 GSKERMVPFGEKARQALKTYLSDGRPALLKEGHPPYLFLNFRGKPLTRQGFWKIIKNHGI 228

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+  +   H LRHSFA+HLL  G DLRS+Q +LGH  ++TTQIYT+V  +     + E
Sbjct: 229 MAGIKKNIKPHGLRHSFASHLLEAGADLRSVQLMLGHADITTTQIYTHVTRER----LKE 284

Query: 313 IYDQTHPS 320
           ++   HP 
Sbjct: 285 LHGTCHPR 292


>gi|167628445|ref|YP_001678944.1| tyrosine recombinase xerd, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167591185|gb|ABZ82933.1| tyrosine recombinase xerd, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 328

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 97/309 (31%), Positives = 152/309 (49%), Gaps = 16/309 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ++    +L +L +ERGLS  T+ +Y  D      FLA     +  I     ++ ++++ +
Sbjct: 24  MRHGDAFLAHLAVERGLSGNTIDAYRRDLADLAAFLA-----ERGIGDPADVTRSDLQDY 78

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +     + +   +  R L+ IK +  +L    I  +     +   +    LP  LN ++ 
Sbjct: 79  LYHTYRRGLSAATRARRLAAIKGYFGFLFDEAIRRDDPTELIDGPRLQRLLPDVLNVEEV 138

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+       +     +  R+ A+L  +Y CGLR+SE ++LT   +  D   +R+ GKG
Sbjct: 139 AALLQ------APPRTIVGLRDRAMLETMYACGLRVSELIALTLDQVRLDLGLVRVVGKG 192

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            K RIVPL      AI EY       L  +  +  LF   RGKPL    F + ++     
Sbjct: 193 MKERIVPLGGLAAAAIEEYLSRTRGTLAGHGAEKHLFLNQRGKPLTRQGFWKILKAYAAE 252

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    T HTLRHSFATHLLSNG DLR++Q +LGH  +STTQIYT++        + E+
Sbjct: 253 AGIAKEVTPHTLRHSFATHLLSNGADLRAVQEMLGHADVSTTQIYTHLT----MGRLREV 308

Query: 314 YDQTHPSIT 322
           YD++HP   
Sbjct: 309 YDRSHPRAR 317


>gi|197123191|ref|YP_002135142.1| tyrosine recombinase XerC [Anaeromyxobacter sp. K]
 gi|196173040|gb|ACG74013.1| tyrosine recombinase XerC [Anaeromyxobacter sp. K]
          Length = 343

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 96/315 (30%), Positives = 144/315 (45%), Gaps = 19/315 (6%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
            +  E+ +E + +   L  E+  S  T ++Y+ D  Q+  +LA         Q +   S 
Sbjct: 7   ALPPEVPEEIRRFDAYLASEKRASPHTRKAYQVDLAQYAAYLADQG------QPLVPSSP 60

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R F++ R+    G  SL R LS ++S  ++L +  +   +    + + K+   LP  
Sbjct: 61  ALVRGFLA-RQAGAAGAVSLGRKLSALRSLYRFLVREGLAPGNPARAVASPKRPKRLPEV 119

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L E++   LV+     T      +  R+ A L LLYG GLR+SE   L  +++      +
Sbjct: 120 LPEEEVAALVETPDAATEA---PLALRDRAFLELLYGSGLRVSELTGLDLEDLDLAGGLV 176

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-----LPLFRGIRGKPLNPGVF 243
           R+ GK +K RIVP      +A+  Y D     L            +F   RG  L     
Sbjct: 177 RVLGKRNKERIVPFGAPAAEALRRYLDGARPVLATGPDHARAGDAVFLNFRGGRLTSRSV 236

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            R +       GLP     H LRH FATHLL NG DLR IQ +LGH  LSTTQ YT+++ 
Sbjct: 237 ARRLDGWVLASGLPRHVHPHVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTHLDW 296

Query: 304 KNGGDWMMEIYDQTH 318
           K     +  +YD  H
Sbjct: 297 KR----LAAVYDAAH 307


>gi|330894535|gb|EGH27196.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 298

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 95/304 (31%), Positives = 141/304 (46%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GLS  T +SY  D   F  +L            +       I   ++ 
Sbjct: 9   IDRFLDALWLEKGLSDNTRESYRSDLALFNGWLQERN------VDLPSAGREVILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R       RS  R LSG + F +YL + K+ T    L +   +    LP++L+E     L
Sbjct: 63  RVENAYKPRSTARFLSGARGFYRYLLREKLITLDPTLQIDMPQLGKPLPKSLSEADVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +          ++    R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K 
Sbjct: 123 L-----AAPDLSEPTGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y        L       LF   RG  +    F   I+      G+
Sbjct: 178 RLVPMGEEAIVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ +
Sbjct: 238 GKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHV----ARARLQEMHAK 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|326202104|ref|ZP_08191974.1| tyrosine recombinase XerD [Clostridium papyrosolvens DSM 2782]
 gi|325987899|gb|EGD48725.1| tyrosine recombinase XerD [Clostridium papyrosolvens DSM 2782]
          Length = 294

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 155/309 (50%), Gaps = 16/309 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +    + ++  LE ++ LS  TLQSY+ D  Q++ +L     ++I +  I   + T + A
Sbjct: 1   MEANVEKFINFLERDKRLSLNTLQSYKRDIEQYITYL-----KEINVTNIANTNKTTVIA 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++   + +     ++ R+L+ I+SF ++L K K+        + + K    LP+ L+ ++
Sbjct: 56  YLLHLQKKGRATSTISRNLASIRSFYQFLYKDKVIDNDPTSELESPKVEKKLPQILSTQE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++               R+ A+L LLY  G+R+SE +SL   +I  +   +R   K
Sbjct: 116 VELLLEQ-----PKCLDLKGIRDKAMLELLYATGIRVSELISLNLDDINFELGFIRCN-K 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G + R +P+      A+ EY D    F +  + +  LF  + GK L    F + I+  + 
Sbjct: 170 GTRERTIPIGSISMAAVHEYLDKSRNFLIQDSQETALFVNVNGKRLTRQGFWKIIKHYKN 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +    T HTLRHSFA HLL NG DLRSIQ +LGH  +S+TQIY  +      + + +
Sbjct: 230 QAKINKDITPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQI----AKNKIKD 285

Query: 313 IYDQTHPSI 321
           +Y +THP  
Sbjct: 286 VYKKTHPRA 294


>gi|255325630|ref|ZP_05366727.1| tyrosine recombinase XerD [Corynebacterium tuberculostearicum
           SK141]
 gi|255297240|gb|EET76560.1| tyrosine recombinase XerD [Corynebacterium tuberculostearicum
           SK141]
          Length = 296

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 93/303 (30%), Positives = 149/303 (49%), Gaps = 15/303 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q WL +L +ERG+S  TL +Y  D R++L +L         ++ +R ++   + A++   
Sbjct: 9   QTWLNHLAVERGVSANTLSNYRRDVRRYLAWLGDN-----GVEDLRSVTRPMVEAYLKDL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R+  +   S  R+L   +   K+     +      + +        LP  L+  +   L+
Sbjct: 64  RSH-MAVSSANRALIVARGLHKFAVSEGVVDVDVAVEVTPPSTGQHLPETLSVDEVTALI 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +     T      +D R+ A+L +LYG G RISE +SL   ++   Q  +R++GKGDK R
Sbjct: 123 EATPTETP-----VDVRDRALLEMLYGTGARISEIVSLNVDDVSSAQEVIRLRGKGDKER 177

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVP+    R+A+  Y       L+      LF   RG  L+       ++   +   L  
Sbjct: 178 IVPVGSHARQALDAYLVRARPALSKGKTPALFLNTRGGALSRQSAWTVLKTAAQRAQLGK 237

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           S + HTLRHSFATHLL  G D+R++Q +LGH  ++TTQIYT+V      D + E++   H
Sbjct: 238 SISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVT----ADSLREVWRTAH 293

Query: 319 PSI 321
           P  
Sbjct: 294 PRA 296


>gi|332159818|ref|YP_004296395.1| site-specific tyrosine recombinase XerC [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318607639|emb|CBY29137.1| tyrosine recombinase XerC [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664048|gb|ADZ40692.1| site-specific tyrosine recombinase XerC [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330862565|emb|CBX72719.1| tyrosine recombinase xerC [Yersinia enterocolitica W22703]
          Length = 303

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 83/313 (26%), Positives = 155/313 (49%), Gaps = 17/313 (5%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           S  L  + + +L+ L++ER LS LT+ SY    +  +        E++ +   + L   +
Sbjct: 5   STSLAPQVEAFLRYLKVERQLSPLTITSYRRQLQALMEM-----GEQMGLAHWQTLDAAQ 59

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +R+ +S+ +   +   SL   LS ++SFL +L  + +   +    +   +    LP+ ++
Sbjct: 60  VRSLVSRSKRAGLHSSSLALRLSALRSFLNWLVSQGVLQANPAKGVSTPRSGRHLPKNID 119

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             +   L+D  L         +  R+ A+L ++YG GLR+SE + +  +++      + +
Sbjct: 120 VDEVDKLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSEMVGMNCKHVDLASGDVWV 173

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG K R VP+  +  K +  + +L   +L       +F    GK ++    Q+   + 
Sbjct: 174 MGKGSKERKVPIGKTAVKWLEHWLELR--ELFEPQDDAIFLANTGKRISARNVQKRFAEW 231

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+      H LRHSFATH+L + GDLR++Q +LGH  L+TTQIYT+++ ++    +
Sbjct: 232 GVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----L 287

Query: 311 MEIYDQTHPSITQ 323
             +YD  HP   +
Sbjct: 288 ATVYDAAHPRAKR 300


>gi|242240703|ref|YP_002988884.1| tyrosine recombinase XerD [Dickeya dadantii Ech703]
 gi|242132760|gb|ACS87062.1| tyrosine recombinase XerD [Dickeya dadantii Ech703]
          Length = 299

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 153/306 (50%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + +ER L++ TLQSY  D R    +LA +        ++      ++++F+++
Sbjct: 9   IEQFLDAVWLERNLAENTLQSYRRDLRTLAAWLAHHH------ASLSDARPDDLQSFLAE 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++   +YL + K+  +     + + K    LP+ L E Q  +L
Sbjct: 63  RVDGGYKATSSARLLSAMRRLFQYLYREKVRPDDPSAVLSSPKLPQRLPKDLTEAQVESL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +           + ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG+K 
Sbjct: 123 L-----AAPATDQPLELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKE 177

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       + +Y     P+ L+      +F   RG+ +    F   I+       +
Sbjct: 178 RLVPLGEEAVYWVEQYLEYGRPWLLDGQTLDVMFPSTRGRQMTRQTFWHRIKHYAVLASI 237

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 238 DSARLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQ 293

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 294 QHHPRA 299


>gi|170781657|ref|YP_001709989.1| site-specific tyrosine recombinase XerD [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169156225|emb|CAQ01367.1| putative XerD-family recombinase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 328

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 94/329 (28%), Positives = 154/329 (46%), Gaps = 24/329 (7%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           +  PE V   L +    WL+++E+ERGLS+ T+Q+Y  D  ++   LA        +   
Sbjct: 14  DTAPE-VPVALRRAVDRWLRHVEVERGLSRNTIQAYRRDLARYTAHLAAE-----GVADP 67

Query: 64  RQLSYTEIRAFISKRRT---QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
              +   +  F  + R      +   SL R LS ++SF ++L +  I         +  K
Sbjct: 68  ADATSAHVAGFAQRVRDPEQGGLTASSLARMLSSVRSFHRFLVEEGIVEVDVSAEQKPPK 127

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
             + LP+A++ +    ++D      +   + +  R+ A+L LLY  G R+SE  +LT  +
Sbjct: 128 LPSRLPKAVSVETMGRILD-----ATDGDEPLRVRDKALLELLYATGARVSEITALTVDD 182

Query: 181 IMDDQS----TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIR 234
           ++         +R+ GKG K RIVP+    R+A+  Y       L         LF G+R
Sbjct: 183 VLGPDGAAAEIVRVVGKGGKQRIVPVGSFARRAVDAYLVRVRPILAARGSATPALFLGLR 242

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G  L+       I+      G+    + H  RHSFATHL++ G D+R +Q +LGH  ++T
Sbjct: 243 GHALSRQNAWLVIKAAAERAGVTEEISPHIFRHSFATHLIAGGADVRVVQELLGHSSVAT 302

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
           TQIYT V      D + ++Y   HP   +
Sbjct: 303 TQIYTRVT----VDTLRDVYTTAHPRARR 327


>gi|56707324|ref|YP_169220.1| integrase/recombinase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110669794|ref|YP_666351.1| integrase/recombinase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|224456388|ref|ZP_03664861.1| integrase/recombinase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370002|ref|ZP_04986009.1| site-specific recombinase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874160|ref|ZP_05246870.1| integrase/recombinase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|54114539|gb|AAV29903.1| NT02FT0289 [synthetic construct]
 gi|56603816|emb|CAG44787.1| Integrase/recombinase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110320127|emb|CAL08170.1| Integrase/recombinase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151568247|gb|EDN33901.1| site-specific recombinase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254840159|gb|EET18595.1| integrase/recombinase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158450|gb|ADA77841.1| Integrase/recombinase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 292

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 89/308 (28%), Positives = 145/308 (47%), Gaps = 18/308 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +      +L NL +E GLS+ T+ SY  D +    + A           +  L + ++ A
Sbjct: 1   MSSAVDAFLDNLWLEHGLSQNTISSYRTDLKFLQNYFAK--------TDLISLDFEQLYA 52

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           FIS R        S  R +S ++ F  +L     T  +    +   K +  LP+ + E  
Sbjct: 53  FISYRSKNGYSSHSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETD 112

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+          T+ +  R+ A+L L+Y  GLR+SE + L   +I  +   +++ GK
Sbjct: 113 VERLL-----QAPDMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMGK 167

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K RIVP+     + + +Y+      L+ N  +  +F     K +    F   I+    
Sbjct: 168 GSKERIVPIGEYALEYLQKYFAEARRSLSENFKEKAVFISKHAKRITRQSFWHRIKNYAL 227

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    + HTLRH+FATHLL++G DLRS+Q +LGH  +STT IYT+++       + E
Sbjct: 228 IAGINTDISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR----LQE 283

Query: 313 IYDQTHPS 320
           IY + HP 
Sbjct: 284 IYQKHHPR 291


>gi|126173088|ref|YP_001049237.1| tyrosine recombinase XerD [Shewanella baltica OS155]
 gi|125996293|gb|ABN60368.1| tyrosine recombinase XerD [Shewanella baltica OS155]
          Length = 309

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 98/301 (32%), Positives = 149/301 (49%), Gaps = 16/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L   +GLS  TL +Y  D R F  +            T+  +S  ++RA+++ R  
Sbjct: 23  FLDDLWSSKGLSDNTLSAYRTDLRHFDRYQGQQG------VTLLAVSQADVRAYLAFRVE 76

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     S  R LS ++ F  YL + K      +  + + K +  LP +L+E Q   L+  
Sbjct: 77  QDFARTSSARLLSSLRRFYTYLVQTKQILADPMALVESPKLTRHLPDSLSESQVDRLLSE 136

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                 +    ++ R+ A+L LLY  GLR+SE + LT + +   Q  +RI GKG K R+V
Sbjct: 137 -----PNVEDAVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLV 191

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           PL       +  Y      +L  N Q   +F   RG+ +    F   I+      G+  +
Sbjct: 192 PLGELAITEVESYMKFARQELLGNKQSDVVFPSKRGQMMTRQTFWHRIKLYALRAGIETA 251

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ Q HP
Sbjct: 252 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHV----ARARLQELHQQHHP 307

Query: 320 S 320
            
Sbjct: 308 R 308


>gi|134301363|ref|YP_001121331.1| tyrosine recombinase/integrase XerD [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|187931093|ref|YP_001891077.1| tyrosine recombinase XerD [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|134049140|gb|ABO46211.1| tyrosine recombinase/integrase XerD [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|187712002|gb|ACD30299.1| tyrosine recombinase XerD [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 292

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 89/308 (28%), Positives = 145/308 (47%), Gaps = 18/308 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +      +L NL +E GLS+ T+ SY  D +    + A           +  L + ++ A
Sbjct: 1   MSSAVDAFLDNLWLEHGLSQNTISSYRTDLKFLQNYFAK--------TDLISLDFEQLYA 52

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           FIS R        S  R +S ++ F  +L     T  +    +   K +  LP+ + E  
Sbjct: 53  FISYRSKNGYSSHSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETD 112

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+          T+ +  R+ A+L L+Y  GLR+SE + L   +I  +   +++ GK
Sbjct: 113 VERLL-----QAPDMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMGK 167

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K RIVP+     + + +Y+      L+ N  +  +F     K +    F   I+    
Sbjct: 168 GSKERIVPIGEYALEYLQKYFAEARRSLSKNFKEKAVFISKHAKRITRQSFWHRIKNYAL 227

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    + HTLRH+FATHLL++G DLRS+Q +LGH  +STT IYT+++       + E
Sbjct: 228 IAGINTDISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR----LQE 283

Query: 313 IYDQTHPS 320
           IY + HP 
Sbjct: 284 IYQKHHPR 291


>gi|91213336|ref|YP_543322.1| site-specific tyrosine recombinase XerC [Escherichia coli UTI89]
 gi|117626070|ref|YP_859393.1| site-specific tyrosine recombinase XerC [Escherichia coli APEC O1]
 gi|218560875|ref|YP_002393788.1| site-specific tyrosine recombinase XerC [Escherichia coli S88]
 gi|237702820|ref|ZP_04533301.1| tyrosine recombinase xerC [Escherichia sp. 3_2_53FAA]
 gi|331649636|ref|ZP_08350718.1| tyrosine recombinase XerC [Escherichia coli M605]
 gi|123084331|sp|Q1R4C3|XERC_ECOUT RecName: Full=Tyrosine recombinase xerC
 gi|166918885|sp|A1AHX9|XERC_ECOK1 RecName: Full=Tyrosine recombinase xerC
 gi|254799332|sp|B7MH75|XERC_ECO45 RecName: Full=Tyrosine recombinase xerC
 gi|91074910|gb|ABE09791.1| integrase/recombinase XerC [Escherichia coli UTI89]
 gi|115515194|gb|ABJ03269.1| site-specific tyrosine recombinase XerC [Escherichia coli APEC O1]
 gi|218367644|emb|CAR05429.1| site-specific tyrosine recombinase [Escherichia coli S88]
 gi|226902991|gb|EEH89250.1| tyrosine recombinase xerC [Escherichia sp. 3_2_53FAA]
 gi|281180860|dbj|BAI57190.1| recombinase [Escherichia coli SE15]
 gi|294489806|gb|ADE88562.1| tyrosine recombinase XerC [Escherichia coli IHE3034]
 gi|307628874|gb|ADN73178.1| site-specific tyrosine recombinase XerC [Escherichia coli UM146]
 gi|315284713|gb|EFU44158.1| tyrosine recombinase XerC [Escherichia coli MS 110-3]
 gi|323189763|gb|EFZ75042.1| tyrosine recombinase XerC [Escherichia coli RN587/1]
 gi|323949305|gb|EGB45195.1| tyrosine recombinase XerC [Escherichia coli H252]
 gi|323954018|gb|EGB49816.1| tyrosine recombinase XerC [Escherichia coli H263]
 gi|330908111|gb|EGH36630.1| tyrosine recombinase XerC [Escherichia coli AA86]
 gi|331041506|gb|EGI13654.1| tyrosine recombinase XerC [Escherichia coli M605]
          Length = 298

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 89/311 (28%), Positives = 153/311 (49%), Gaps = 17/311 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+      + F +     +  +Q+ +Q   T +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIIHFAS-----ENGLQSWQQCDVTMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHPSITQ 323
           +YD  HP   +
Sbjct: 286 VYDAAHPRAKR 296


>gi|315655289|ref|ZP_07908190.1| tyrosine recombinase XerD [Mobiluncus curtisii ATCC 51333]
 gi|315490544|gb|EFU80168.1| tyrosine recombinase XerD [Mobiluncus curtisii ATCC 51333]
          Length = 327

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 91/331 (27%), Positives = 152/331 (45%), Gaps = 23/331 (6%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M     P++V  ELL   Q +L  L +ERG S  T+ +Y  D R+++ FL         +
Sbjct: 1   MGSRPAPDLVCPELLNP-QPYLDYLAVERGASPHTVAAYTRDLRRYITFLVAN-----GV 54

Query: 61  QTIRQLSYTEIRAFISKRRTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
            ++ +++   + +F             +   S +R+++ ++S+ +Y  +      +    
Sbjct: 55  NSLDEVTLPVLESFARALEAGFGDYAAVAPSSARRAIASVRSWHRYAYETGAVRANPTKG 114

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +   K    LP  L  ++  TL++      S        R+ A+L  LY  G RISEA++
Sbjct: 115 IAPAKVGAHLPTVLTVEEVQTLLE----AASATGDDNALRDRALLEFLYATGARISEAVN 170

Query: 176 LTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFR 231
           L   +I  D+    +R+ GKG K R+  L    + A+  Y       L      Q  +F 
Sbjct: 171 LAVDDIDLDEEIPLVRLFGKGRKERLSMLGHLAKDALEAYLVRVRPRLAEKGRSQGRVFL 230

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
              G+PL+       I+ + +   + +    HTLRH FATHLL  G D+R++Q +LGH  
Sbjct: 231 NTLGRPLSRQSAWAIIQAVAQRAQITVPVGPHTLRHCFATHLLQGGADVRAVQELLGHAS 290

Query: 292 LSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           ++TTQIYT V +    D + E+Y   HP   
Sbjct: 291 VTTTQIYTKVTN----DMIREVYASAHPRAR 317


>gi|317153571|ref|YP_004121619.1| tyrosine recombinase XerC [Desulfovibrio aespoeensis Aspo-2]
 gi|316943822|gb|ADU62873.1| tyrosine recombinase XerC [Desulfovibrio aespoeensis Aspo-2]
          Length = 313

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 104/311 (33%), Positives = 172/311 (55%), Gaps = 16/311 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L +L +E+G S+ T++SY  D  QF  FL      K +++   +++   +R+F+++
Sbjct: 14  LRGFLAHLAVEKGYSEATIRSYGTDLEQFDGFLKR---SKRSLEHPERVTRDHVRSFLAE 70

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
               ++G  ++ R LS ++++ +YL + ++ T      +RN K+    P+ LN  QA+ +
Sbjct: 71  MHRLRLGKATMGRKLSSLRAYFRYLLRHRMITTDPTATIRNPKQEKRHPQVLNVDQAVAM 130

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++ ++     E      R+ A+  +LYG GLRISEA+ L   ++  D   +R+ GKG K 
Sbjct: 131 MEAMI-----EPDPEGLRDLALAEVLYGSGLRISEAVGLDLNDVDSD--VIRVTGKGSKE 183

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLG 255
           RIVPL  +  K I  Y +     +  N  +  LF  +R  K LN     R + +L    G
Sbjct: 184 RIVPLSDAAVKRIRRYMEQRHALIGDNYAEQALFLSVRSGKRLNRRQANRIVAKLGGLAG 243

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           LP     H LRHSFATH+L  G DLRS+Q +LGH RL+TTQ YT+++ ++    +M++YD
Sbjct: 244 LPKDVHPHMLRHSFATHMLEAGADLRSVQELLGHERLTTTQRYTHLDMQH----LMQVYD 299

Query: 316 QTHPSITQKDK 326
           Q HP   +  K
Sbjct: 300 QAHPRAKEDGK 310


>gi|117921769|ref|YP_870961.1| tyrosine recombinase XerD [Shewanella sp. ANA-3]
 gi|117614101|gb|ABK49555.1| tyrosine recombinase XerD [Shewanella sp. ANA-3]
          Length = 300

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 97/304 (31%), Positives = 149/304 (49%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L +L   +GLS  TL +Y  D R F  +        I      ++   ++RA+++ 
Sbjct: 11  IDAFLDDLWSSKGLSDNTLSAYRTDLRHFDRYQQGQGLRLI------EVGQADVRAYLAY 64

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  Q+    S  R LS ++ F  YL + K      +  + + K S  LP +L+E Q   L
Sbjct: 65  RVEQQFARTSSARLLSSLRRFYTYLLQTKQIAGDPMALIESPKLSRQLPDSLSESQVDRL 124

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +        +    ++ R+ A+L LLY  GLR+SE + LT + +   Q  +RI GKG K 
Sbjct: 125 L-----AEPNVDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKE 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y     ++L  NIQ   +F   R + +    F   I+      G+
Sbjct: 180 RLVPMGELAITEVERYLSFARYELLGNIQSDVVFPSKRAQMMTRQTFWHRIKLYASRAGI 239

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ Q
Sbjct: 240 ETELSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHV----ARARLQELHQQ 295

Query: 317 THPS 320
            HP 
Sbjct: 296 HHPR 299


>gi|331665461|ref|ZP_08366360.1| tyrosine recombinase XerC [Escherichia coli TA143]
 gi|331057359|gb|EGI29348.1| tyrosine recombinase XerC [Escherichia coli TA143]
          Length = 298

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 89/311 (28%), Positives = 153/311 (49%), Gaps = 17/311 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+      + F +     +  +Q+ +Q   T +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFAS-----ENGLQSWQQCDVTMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSVPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHPSITQ 323
           +YD  HP   +
Sbjct: 286 VYDAAHPRAKR 296


>gi|320104451|ref|YP_004180042.1| tyrosine recombinase XerD subunit [Isosphaera pallida ATCC 43644]
 gi|319751733|gb|ADV63493.1| tyrosine recombinase XerD subunit [Isosphaera pallida ATCC 43644]
          Length = 325

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 93/319 (29%), Positives = 152/319 (47%), Gaps = 13/319 (4%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
             +LP   + +  +    +L  L  E  LS  TL +Y  D  +F  + A     +   + 
Sbjct: 18  ARSLPARRAPDGTQWIGGFLHYLMTECRLSPGTLAAYRGDLVKFTRWRAA---REAVPRP 74

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           I  L   ++ A++       +   ++ R LS + SF +YL      +E+ +  +      
Sbjct: 75  IAALQVGDLEAYVDYLHGLGLAPATVCRHLSSLSSFFRYLAIEGRLSENRVELVTAPSLW 134

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             LP  +  +    L++        E  W   R+ AIL  LY  G R+SE   LT +++ 
Sbjct: 135 ERLPTVIGPQAVSQLLE-----APAEWGWKGRRDRAILETLYATGCRVSEVAGLTIRDLD 189

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPG 241
            D ++ R+ GKGD+ RIVPL    ++A+  + +            + +F    G+PL+ G
Sbjct: 190 LDSASARVVGKGDRERIVPLGQPAQRALRRWLEERPRRVQRRPQVVAVFVSRTGRPLDRG 249

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              R ++   R  GL  + + HTLRHSFATHLL+ G DLR++Q +LGH  +STTQIYT V
Sbjct: 250 SIWRIVKASARLAGLSATVSPHTLRHSFATHLLAGGADLRAVQELLGHASISTTQIYTRV 309

Query: 302 NSKNGGDWMMEIYDQTHPS 320
                   ++E++ + HP 
Sbjct: 310 ----EVSRLLEVHAKFHPR 324


>gi|303326777|ref|ZP_07357219.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3]
 gi|302862765|gb|EFL85697.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3]
          Length = 309

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 87/309 (28%), Positives = 147/309 (47%), Gaps = 13/309 (4%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
             L  +   WL  L  +RGLS  T++SY  D   F +F     +   +   + +    EI
Sbjct: 11  PPLSNQLPAWLDYLLAQRGLSPRTVESYGQDLESFFLFEEELAQSGGSASCLDE---QEI 67

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
             +++  R++    R+L R LS +++F  +  +      +  L + N K    LP  L+ 
Sbjct: 68  FLYLAWLRSRGNTGRTLARRLSALRAFFAFAVEEGTLKTNPALLLENPKLPQHLPEVLSR 127

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           ++   L+           +    R+  +L +LY  GLR+SE  +L+  ++   +  +R+ 
Sbjct: 128 EEMEKLL-----VLPDMDEKSGRRDRCMLEMLYAAGLRVSELCNLSVADLDLQRGLVRVF 182

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG K R+VPL     +A+L  Y      L       LF    G+ L+     + +++  
Sbjct: 183 GKGAKERLVPLHDM-IQALLGDYLRSWRPLFSPGGNQLFVNRSGRALSRQYIWKMVKKYT 241

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+  + + HT RHSFATHLL  G DLR++Q +LGH  +S T+IYT+V ++     + 
Sbjct: 242 LLAGIRRAVSPHTFRHSFATHLLEGGADLRAVQLLLGHADISATEIYTHVQAER----LR 297

Query: 312 EIYDQTHPS 320
            I+ Q HP 
Sbjct: 298 GIHHQFHPR 306


>gi|153839359|ref|ZP_01992026.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ3810]
 gi|149747107|gb|EDM58095.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ3810]
 gi|328472047|gb|EGF42924.1| site-specific tyrosine recombinase XerD [Vibrio parahaemolyticus
           10329]
          Length = 305

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 92/316 (29%), Positives = 153/316 (48%), Gaps = 17/316 (5%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           + V+ +     + +L  + +ERGLS+ TL SY  D  + L ++  +         +  +S
Sbjct: 5   QPVNQQDFALVEQFLDAMWMERGLSENTLASYRNDLMKLLTWMEHHRYR------LDFIS 58

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
            + ++ + +          S  R LS I+   +YL + K+  +     + + K    LP+
Sbjct: 59  LSGLQEYQTYLVDLDYKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPK 118

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            ++E+Q   L+D            ++ R+ A+L LLY  GLR++E +SLT +NI   Q  
Sbjct: 119 DISEEQVDALLD-----APDPNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGV 173

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           +R+ GKG K R+VP+  +    I  +     P  L       +F   R + +    F   
Sbjct: 174 VRVTGKGGKERLVPMGENAIDWIETFIQQGRPALLGETSSDVVFPSKRARQMTRQTFWHR 233

Query: 247 IRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           I+      G+     + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++ 
Sbjct: 234 IKYYAVIAGIDTDQLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 293

Query: 306 GGDWMMEIYDQTHPSI 321
               + +I+ Q HP  
Sbjct: 294 ----LKQIHSQHHPRA 305


>gi|119385228|ref|YP_916284.1| site-specific tyrosine recombinase XerC [Paracoccus denitrificans
           PD1222]
 gi|119374995|gb|ABL70588.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 312

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 127/321 (39%), Positives = 184/321 (57%), Gaps = 9/321 (2%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M G      ++  +    + WL +    R  S  T+++Y+ D   FL FL  Y       
Sbjct: 1   MTGGAELLALAPAMADNLERWLASERAARDRSDHTIRAYQADLLAFLTFLGSYHGTPALP 60

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            T+  L+ T++RAF +  R + +  RSL R LS  +SF++++  R     S  L  R  K
Sbjct: 61  ATLAGLTQTDMRAFAAAERGRGLSARSLARRLSATRSFIRWMSDRHGFDASRALASRGPK 120

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
            + SLPR L  +QA  +++  +  ++H   WI  R++A+L LL+GCGLRISEAL L   +
Sbjct: 121 YTRSLPRPLAPEQAQDVLE--ITGSTHPEAWIATRDAAVLTLLWGCGLRISEALGLNGAD 178

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
               ++ L I+GKG + R VP+LP  R+AI +Y  LCP+ L    + PLFRG RG  L+P
Sbjct: 179 WPLREA-LTIRGKGGRERQVPVLPIAREAIADYLRLCPYPL--QAKAPLFRGARGGRLSP 235

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            +    +RQ R+ LGLP + T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ+YT 
Sbjct: 236 TLISGAMRQARQVLGLPPTATPHALRHSFATHLLTAGGDLRTIQELLGHASLSTTQVYTG 295

Query: 301 VNSKNGGDWMMEIYDQTHPSI 321
           V+  +    ++ +Y   HP  
Sbjct: 296 VDDAH----LLAVYRAAHPRA 312


>gi|311739368|ref|ZP_07713203.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311305184|gb|EFQ81252.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 296

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 93/303 (30%), Positives = 149/303 (49%), Gaps = 15/303 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q WL +L +ERG+S  TL +Y  D R++L +L         ++ +R ++   + A++   
Sbjct: 9   QTWLNHLAVERGVSANTLSNYRRDVRRYLSWLGDN-----GVEDLRSVTRPMVEAYLKDL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R+  +   S  R+L   +   K+     +      + +        LP  L+  +   L+
Sbjct: 64  RSH-MAVSSANRALIVARGLHKFAVSEGVVDVDVAVEVTPPSTGQQLPETLSVDEVTALI 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +     T      +D R+ A+L +LYG G RISE +SL   ++   Q  +R++GKGDK R
Sbjct: 123 EATPTETP-----VDVRDRALLEMLYGTGARISEIVSLNVDDVSSAQEVIRLRGKGDKER 177

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVP+    R+A+  Y       L+      LF   RG  L+       ++   +   L  
Sbjct: 178 IVPVGSHARQALDAYLVRARPALSKGKTPALFLNTRGGALSRQSAWTVLKTAAQRAQLGK 237

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           S + HTLRHSFATHLL  G D+R++Q +LGH  ++TTQIYT+V      D + E++   H
Sbjct: 238 SISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVT----ADSLREVWRTAH 293

Query: 319 PSI 321
           P  
Sbjct: 294 PRA 296


>gi|190575908|ref|YP_001973753.1| site-specific tyrosine recombinase XerC [Stenotrophomonas
           maltophilia K279a]
 gi|190013830|emb|CAQ47468.1| putative integrase/recombinase [Stenotrophomonas maltophilia K279a]
          Length = 298

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 152/308 (49%), Gaps = 21/308 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +   Q +LQ+L++ER +S  TL +Y  D     ++             +  L    +R F
Sbjct: 1   MSAVQAFLQHLQVERRMSAHTLDAYRRDLDALSVWAEPRG------VAVEALDADALRQF 54

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++    + +  +SL+R LS  +SF  +L K      S    ++  +    LP+ L+  +A
Sbjct: 55  VADEHRRGLSAKSLQRRLSACRSFYAWLLKHGRIEVSPAATLKAPRAPRRLPQVLDADEA 114

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           + LV+            +  R+ A+L L Y  GLR+SE  +LT +++  D   + + GKG
Sbjct: 115 VQLVEL------EPEGELGRRDRALLELFYSSGLRLSEVCALTWRDLDFDSGLVNVLGKG 168

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           ++ R VP     R+A+  +      +       P+F G R  P++    Q  IRQL +  
Sbjct: 169 NRQRRVPFGRPAREALQAWR----AESGGGPASPVFPG-RNGPISQRAVQIRIRQLAQRQ 223

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           GL      H LRHSFA+H+L + GDLR +Q +LGH  ++TTQIYT+++ ++    + ++Y
Sbjct: 224 GLFKHVHPHMLRHSFASHILESSGDLRGVQELLGHADIATTQIYTHLDFQH----LAKVY 279

Query: 315 DQTHPSIT 322
           D  HP   
Sbjct: 280 DAAHPRAK 287


>gi|156935864|ref|YP_001439780.1| site-specific tyrosine recombinase XerC [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156534118|gb|ABU78944.1| hypothetical protein ESA_03747 [Cronobacter sakazakii ATCC BAA-894]
          Length = 301

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 84/315 (26%), Positives = 146/315 (46%), Gaps = 17/315 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +    L      +L+ L++ER LS +TL +YE      +         +  +++  Q   
Sbjct: 1   MTDSPLHPPIARFLRYLKVERQLSPVTLLNYERQLTAIVGLAG-----EAGLKSWAQCDA 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R+   + R   +G  SL   LS ++SF  +   +     +    +   K    LP+ 
Sbjct: 56  AMVRSLAVRSRRAGLGPSSLALRLSALRSFFDWQVSQGELKANPAKGVSTPKTPRHLPKN 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++      L+D  L         +  R+ A+L ++YG GLR+SE +++   ++      +
Sbjct: 116 IDVDDVNRLLDIDL------NDPLAVRDRAMLEIMYGAGLRLSELVNIDCNHLDLTSGEV 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +P+  S    I  + +L   +L       LF   +GK ++    Q+   
Sbjct: 170 WVMGKGSKERRLPIGRSAVAWIEHWLNLR--ELFGPDDDALFLSKQGKRISARNVQKRFA 227

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GL      H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++   
Sbjct: 228 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH--- 284

Query: 309 WMMEIYDQTHPSITQ 323
            +  +YD  HP   +
Sbjct: 285 -LASVYDAAHPRARR 298


>gi|28897283|ref|NP_796888.1| site-specific tyrosine recombinase XerD [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|260363587|ref|ZP_05776407.1| tyrosine recombinase XerD [Vibrio parahaemolyticus K5030]
 gi|260876248|ref|ZP_05888603.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AN-5034]
 gi|260896426|ref|ZP_05904922.1| tyrosine recombinase XerD [Vibrio parahaemolyticus Peru-466]
 gi|260902723|ref|ZP_05911118.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ4037]
 gi|28805492|dbj|BAC58772.1| integrase/recombinase XerD [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088405|gb|EFO38100.1| tyrosine recombinase XerD [Vibrio parahaemolyticus Peru-466]
 gi|308092863|gb|EFO42558.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AN-5034]
 gi|308107651|gb|EFO45191.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ4037]
 gi|308113317|gb|EFO50857.1| tyrosine recombinase XerD [Vibrio parahaemolyticus K5030]
          Length = 305

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 92/316 (29%), Positives = 153/316 (48%), Gaps = 17/316 (5%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           + V+ +     + +L  + +ERGLS+ TL SY  D  + L ++  +         +  +S
Sbjct: 5   QPVNQQDFALVEQFLDAMWMERGLSENTLASYRNDLMKLLTWMDHHRYR------LDFIS 58

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
            + ++ + +          S  R LS I+   +YL + K+  +     + + K    LP+
Sbjct: 59  LSGLQEYQTYLVDLDYKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPK 118

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            ++E+Q   L+D            ++ R+ A+L LLY  GLR++E +SLT +NI   Q  
Sbjct: 119 DISEEQVDALLD-----APDPNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGV 173

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           +R+ GKG K R+VP+  +    I  +     P  L       +F   R + +    F   
Sbjct: 174 VRVTGKGGKERLVPMGENAVDWIETFIQQGRPALLGETSSDVVFPSKRARQMTRQTFWHR 233

Query: 247 IRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           I+      G+     + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++ 
Sbjct: 234 IKYYAVIAGIDTDQLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 293

Query: 306 GGDWMMEIYDQTHPSI 321
               + +I+ Q HP  
Sbjct: 294 ----LKQIHSQHHPRA 305


>gi|284008429|emb|CBA74880.1| tyrosine recombinase [Arsenophonus nasoniae]
          Length = 303

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 150/305 (49%), Gaps = 17/305 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + +E  L+  TL SY  D +  + +L+    + +T      +   ++++F+++
Sbjct: 13  IEQFLDTIWLEHDLAANTLSSYRTDLQTLVGWLSRQGYDLLT------VGVMDLQSFLAE 66

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++   +Y  + K+ T+     +   K    LP+ LNEKQ   L
Sbjct: 67  RVEGGYKATSSARLLSAMRRLFQYFYREKLRTDDPTAQLSAPKLPKRLPKDLNEKQVEDL 126

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +     H       I+ R+  +L +LY CGLR+SE + LT  +I   Q  +R+ GKG+K 
Sbjct: 127 L-----HAPTTQDPIELRDKTMLEVLYACGLRVSELVGLTLTDISLRQGVIRVVGKGNKE 181

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       +  Y     P  LN      LF   RG  +    F   I+      G+
Sbjct: 182 RLVPLGEEAIYWLETYLTESRPILLNGLTNDVLFPSKRGTQMTRQTFWHRIKYYAAIAGI 241

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 242 DSAKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 297

Query: 316 QTHPS 320
           Q HP 
Sbjct: 298 QHHPR 302


>gi|262190134|ref|ZP_06048420.1| tyrosine recombinase XerC [Vibrio cholerae CT 5369-93]
 gi|262033988|gb|EEY52442.1| tyrosine recombinase XerC [Vibrio cholerae CT 5369-93]
          Length = 311

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 81/328 (24%), Positives = 163/328 (49%), Gaps = 17/328 (5%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+ + L   +   L +  + +   L  E+GLS  T ++Y+        +L      ++ +
Sbjct: 1   MKNDEL-TPLPDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLV-----QVGL 54

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
               QL    +R  + + + Q +   S+   LS ++SFL +L  R     +    +   +
Sbjct: 55  SNWSQLDAAWVRQLVMQGKRQGMKASSIATRLSSLRSFLDFLILRGELEANPAKGVSAPR 114

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K  +LP+ L+  +   L++        +   +  R+ AI+ L+YG GLR++E +S+  ++
Sbjct: 115 KQRTLPKNLDVDEMAQLLEVT------DDDPLSIRDRAIMELMYGAGLRLAELVSIDVKD 168

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           +   +  +R+ GKG+K R V      ++ + ++  L    L  + +  LF    G  ++ 
Sbjct: 169 VNLSEGEIRVIGKGNKERKVWFAGQAQEWVGKWLKLRS-QLADSAETALFVSKLGTRISH 227

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              Q+ + +  +   +    + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+
Sbjct: 228 RSVQKRMAEWGQKQAVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH 287

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           ++ ++    + ++YDQ HP   +K+K +
Sbjct: 288 LDFQH----LAQVYDQAHPRARKKNKDD 311


>gi|161506408|ref|YP_001573520.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867755|gb|ABX24378.1| hypothetical protein SARI_04606 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 298

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 150/309 (48%), Gaps = 17/309 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L  L +ER L++ TL +Y  D    + +L          +T+      +++  
Sbjct: 5   LARIEQFLDALWLERNLAENTLSAYRRDLSMVVAWLRHRG------KTLATAQADDLQTL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R        S  R LS ++ F ++L + K   +     + + K    LP+ L+E Q 
Sbjct: 59  LAERVEGGYKATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+   L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG
Sbjct: 119 ERLLQAPLIEQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y     P+ LN      LF   R + +    F   I+     
Sbjct: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHPSI 321
           ++ Q HP  
Sbjct: 290 LHQQHHPRA 298


>gi|227541999|ref|ZP_03972048.1| site-specific tyrosine recombinase XerD [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182214|gb|EEI63186.1| site-specific tyrosine recombinase XerD [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 360

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 95/310 (30%), Positives = 150/310 (48%), Gaps = 21/310 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  + W+  L +ERG ++ T+ SY  D   +L F        +  +++  ++ T+I AF+
Sbjct: 68  KVARQWITYLTVERGKARNTIASYRRDLASYLDF--------VGERSLDSIAATDIEAFL 119

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                  +   S++R LS I+ F  + +   I  +    ++        LP  L+  +  
Sbjct: 120 QSLGRHGLAVTSVRRMLSTIRGFHAFARDEGIVADDVAHDITPPAMPQHLPDTLSVDEIN 179

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQG 192
           TL+++           +  RN A+L LLYG G RISE LSL   +I    +    L + G
Sbjct: 180 TLIESQ-----AGDSAVALRNKALLELLYGTGARISEVLSLAVDDITALEETDGILVLTG 234

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLR 251
           KGDK RIVP+    R+A+  Y       LN      LF  +RG   ++     + ++Q  
Sbjct: 235 KGDKQRIVPVGSHARQAVDAYLVRGRPQLNKGKSAALFLNVRGGKAMSRQSAWQVVKQAA 294

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+    + HTLRHSFATHLL  G D+RS+Q +LGH  ++TTQIYT++      D + 
Sbjct: 295 TEAGITKDISPHTLRHSFATHLLEGGADVRSVQELLGHASVTTTQIYTHIT----ADSLR 350

Query: 312 EIYDQTHPSI 321
            ++   HP  
Sbjct: 351 AMWRTAHPRA 360


>gi|319899442|ref|YP_004159539.1| integrase/recombinase XerC [Bartonella clarridgeiae 73]
 gi|319403410|emb|CBI76978.1| integrase/recombinase XerC [Bartonella clarridgeiae 73]
          Length = 322

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 143/319 (44%), Positives = 201/319 (63%), Gaps = 10/319 (3%)

Query: 5   NLPEIVS-FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N+P I +   LL  R+NWL++L   R ++  T  +YE DTRQFL FL  +   + T+  +
Sbjct: 12  NIPLIPADHTLLIARKNWLESLVQTRRMTAQTAIAYERDTRQFLFFLCQHLGYQPTLNDL 71

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
             L   + RA+++ RRTQ I  RSL R+++ ++SF  YL + K         +R  K   
Sbjct: 72  ANLRVADFRAYLAYRRTQNINARSLSRNMASLRSFFNYLSREKEVNVPAAKLVRTPKYPK 131

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-M 182
           SLP+AL  + AL +V     +      WI ARN+AIL LLYGCG+RISEAL+LTP+    
Sbjct: 132 SLPKALTIESALRIVKEE--NQQENEPWIIARNTAILILLYGCGMRISEALALTPEQFAD 189

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
               +L + GKG K R+VP++P V +A+  Y   CP+ L  N   P+FRG+RGKPL P +
Sbjct: 190 PSIKSLSVTGKGGKTRLVPMIPIVHEAVENYLKCCPYPLLNNQ--PIFRGVRGKPLQPAI 247

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            QR ++ LR +LGLP +TT H LRHSFATHLLS GGDLR+IQ +LGH  LSTTQ+YT+++
Sbjct: 248 IQRTVQNLRAHLGLPETTTPHALRHSFATHLLSRGGDLRTIQELLGHACLSTTQVYTHID 307

Query: 303 SKNGGDWMMEIYDQTHPSI 321
           +    ++++EIY + HP  
Sbjct: 308 T----NYLLEIYQKAHPRA 322


>gi|78042632|ref|YP_360783.1| tyrosine recombinase XerD [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77994747|gb|ABB13646.1| tyrosine recombinase XerD [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 287

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 94/301 (31%), Positives = 154/301 (51%), Gaps = 18/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  L +E+G S  TL SY  D  +F+ FL           +I   +  +I+ ++     
Sbjct: 5   FIDYLLLEKGFSLNTLLSYRRDLEKFVSFLEKRNI------SIIDATSKDIKLYLQDL-A 57

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +K+   S+ R+L+ I+SF KYL + KI  E+  L++   K    LP  L+ ++   L+  
Sbjct: 58  RKLKPASVARNLAAIRSFYKYLLREKIVGENPALDVDGPKLGLKLPEILSYEEIDLLL-- 115

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                   + W   R+ A+L LLY  GLR+SE ++L   N+  D+  ++I GKG K+RIV
Sbjct: 116 ---KAPDLSTWEGVRDRAMLELLYATGLRVSELVNLELPNLYLDERYVKILGKGAKMRIV 172

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P        + +Y  L       +  L LF   +G       F + +++  +  G+  + 
Sbjct: 173 PFGEVAAHYLNQYLALR--AKRKSNSLKLFITRKGSGFTRQGFWKMLKRYGQKAGIVKNL 230

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           T H +RHSFATHLL NG DLR +Q +LGH  + TTQIYT++ ++     + E++ + HP 
Sbjct: 231 TPHLIRHSFATHLLENGADLRIVQELLGHSFIETTQIYTHLTTR----KLREVFRKAHPR 286

Query: 321 I 321
            
Sbjct: 287 A 287


>gi|162452703|ref|YP_001615070.1| site-specific recombinase [Sorangium cellulosum 'So ce 56']
 gi|161163285|emb|CAN94590.1| site-specific recombinase [Sorangium cellulosum 'So ce 56']
          Length = 323

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 87/313 (27%), Positives = 145/313 (46%), Gaps = 14/313 (4%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
            ++ +L      +L +L +ER L+ LTL++Y  D  + +        E   I T+  L  
Sbjct: 25  PLAVDLATWVDAYLDHLRVERALAPLTLEAYGHDLAKLVAHA-----EASGITTVEGLDQ 79

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           + I  ++       I   S  R LS ++ F+++L + +         +   +    LP+ 
Sbjct: 80  SLIGTYLVALGQAGISASSAARHLSAVRGFVRFLLRERRIERDPCALVERPRVGRRLPKV 139

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+  +   L++        +  +   R+ A+L+++Y  GLR+SE + L   +I   +  +
Sbjct: 140 LSFDEIALLIE-----APEQGTFKGLRDRAMLHVMYAAGLRVSEVVRLKLADIDRRKGIV 194

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
              GKG K R+VPL      AI  Y +L            LF   RG PL      + + 
Sbjct: 195 MALGKGGKRRLVPLGEPALAAIDAYLELRATHPRSAATQVLFLSPRGGPLTRQAVWKLLG 254

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
              R +G+   ++ H LRHSFATHLL  G DLRS+Q++LGH  + TT+IYT++      D
Sbjct: 255 GYARAVGIAKPSSPHKLRHSFATHLLEGGADLRSVQALLGHANVVTTEIYTHLAD----D 310

Query: 309 WMMEIYDQTHPSI 321
            +   Y + HP  
Sbjct: 311 HVRAAYRRAHPRA 323


>gi|215489139|ref|YP_002331570.1| site-specific tyrosine recombinase XerC [Escherichia coli O127:H6
           str. E2348/69]
 gi|312969461|ref|ZP_07783663.1| tyrosine recombinase XerC [Escherichia coli 2362-75]
 gi|254799331|sp|B7UNC8|XERC_ECO27 RecName: Full=Tyrosine recombinase xerC
 gi|215267211|emb|CAS11659.1| site-specific tyrosine recombinase XerC [Escherichia coli O127:H6
           str. E2348/69]
 gi|312286008|gb|EFR13926.1| tyrosine recombinase XerC [Escherichia coli 2362-75]
 gi|320197620|gb|EFW72232.1| Tyrosine recombinase XerC [Escherichia coli WV_060327]
 gi|325499220|gb|EGC97079.1| site-specific tyrosine recombinase XerC [Escherichia fergusonii
           ECD227]
          Length = 298

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 88/311 (28%), Positives = 152/311 (48%), Gaps = 17/311 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+      + F +     +  +Q+ +Q   T +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFAS-----ENGLQSWQQCDVTMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL    L  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLRN--LFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHPSITQ 323
           +YD  HP   +
Sbjct: 286 VYDAAHPRAKR 296


>gi|313632584|gb|EFR99578.1| tyrosine recombinase XerD [Listeria seeligeri FSL N1-067]
 gi|313637133|gb|EFS02675.1| tyrosine recombinase XerD [Listeria seeligeri FSL S4-171]
          Length = 297

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 90/306 (29%), Positives = 153/306 (50%), Gaps = 15/306 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             ++L  L +E+GLS  T+++YE D   F+ ++         +     L  ++I  F++ 
Sbjct: 5   IDDFLHFLIVEKGLSANTIKAYERDLHYFVSYINTARP----LTDPNTLERSDIVGFMAF 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R +    RS+ R ++ ++SF  YL      +   ++ +   K++  LP+ LN       
Sbjct: 61  ARKEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVE-- 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
              +LL +S  +  +  R+ A++ +LY  GLR++E + L   ++      ++  GKGDK 
Sbjct: 119 ---LLLSSSDTSTSLGLRDQAMMEILYATGLRVTELVQLKMDDLHLQMGFIQTIGKGDKE 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           RI+PL  +    + +Y +     L         +F    G+ L    F + ++ + +  G
Sbjct: 176 RIIPLGKTATTVLEQYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESG 235

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT+V        + ++Y 
Sbjct: 236 IEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLR----LKDVYK 291

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 292 QFHPRA 297


>gi|89257003|ref|YP_514365.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115315363|ref|YP_764086.1| site specific recombinase XerD [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156503203|ref|YP_001429268.1| tyrosine recombinase XerD/ phage integrase family protein
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|167009383|ref|ZP_02274314.1| tyrosine recombinase XerD [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254368256|ref|ZP_04984276.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           257]
 gi|254369853|ref|ZP_04985863.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|290954477|ref|ZP_06559098.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295312082|ref|ZP_06802895.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|89144834|emb|CAJ80173.1| Integrase/recombinase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115130262|gb|ABI83449.1| site specific recombinase XerD [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134254066|gb|EBA53160.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           257]
 gi|156253806|gb|ABU62312.1| tyrosine recombinase XerD/ phage integrase family protein
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|157122812|gb|EDO66941.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           FSC022]
          Length = 292

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 145/308 (47%), Gaps = 18/308 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +      +L NL +E GLS+ T+ SY  D +    + A           +  L + ++ A
Sbjct: 1   MSSAVDAFLDNLWLEHGLSQNTISSYRTDLKFLQNYFAK--------TDLISLDFEQLYA 52

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           FIS R        S  R +S ++ F  +L     T  +    +   K +  LP+ + E  
Sbjct: 53  FISYRSKNGYSSHSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETD 112

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L     L     T+ +  R+ A+L L+Y  GLR+SE + L   +I  +   +++ GK
Sbjct: 113 VERL-----LQAPDMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDININIGVIQVMGK 167

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K RIVP+     + + +Y+      L+ N  +  +F     K +    F   I+    
Sbjct: 168 GSKERIVPIGEYALEYLQKYFAEARTSLSKNFKEKAVFISKHAKRITRQSFWHRIKNYAL 227

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    + HTLRH+FATHLL++G DLRS+Q +LGH  +STT IYT+++       + E
Sbjct: 228 IAGINTDISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR----LQE 283

Query: 313 IYDQTHPS 320
           IY + HP 
Sbjct: 284 IYQKHHPR 291


>gi|323167559|gb|EFZ53265.1| tyrosine recombinase XerC [Shigella sonnei 53G]
          Length = 298

 Score =  266 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 89/311 (28%), Positives = 152/311 (48%), Gaps = 17/311 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+      + F +        +Q+ +Q   T +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENV-----LQSWQQCDVTMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHPSITQ 323
           +YD  HP   +
Sbjct: 286 VYDAAHPRAKR 296


>gi|302879928|ref|YP_003848492.1| tyrosine recombinase XerD [Gallionella capsiferriformans ES-2]
 gi|302582717|gb|ADL56728.1| tyrosine recombinase XerD [Gallionella capsiferriformans ES-2]
          Length = 305

 Score =  266 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 96/314 (30%), Positives = 154/314 (49%), Gaps = 19/314 (6%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + + ELL E   +  +L +E GLS+ TL SY  D  +F  +L          Q + Q ++
Sbjct: 1   MNNAELLDE---FADSLWLEDGLSRNTLDSYRRDLNKFSDWLRNQRG-----QDLLQTTH 52

Query: 69  TEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
            +++ +I+     QK    S  R+LS +K   +YL ++        L +   K   +LP+
Sbjct: 53  ADLQGYIADLFIVQKAKPSSAGRNLSSLKRLFRYLLRQGKIAIDPTLKIDTPKLPRNLPQ 112

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           +L E+    L+             +  R+  +  +LY  GLR+SE +SL    +  D   
Sbjct: 113 SLTEQDVEQLL-----AAPDIETSLGLRDRTMFEVLYATGLRVSELVSLGIGQLDMDMGV 167

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           +R+ GKG+K R+VPL       +  Y D      L   I   LF   RG  +   +F   
Sbjct: 168 VRVAGKGNKERLVPLGEVALDWLQSYLDDSRGVLLAGRISDDLFVTARGSGMTRQMFWYL 227

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           I++  +  GL    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +  
Sbjct: 228 IKKHAKQGGLDKPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARER- 286

Query: 307 GDWMMEIYDQTHPS 320
              + +++ + HP 
Sbjct: 287 ---LKQLHAKHHPR 297


>gi|229815095|ref|ZP_04445432.1| hypothetical protein COLINT_02137 [Collinsella intestinalis DSM
           13280]
 gi|229809325|gb|EEP45090.1| hypothetical protein COLINT_02137 [Collinsella intestinalis DSM
           13280]
          Length = 333

 Score =  266 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 95/314 (30%), Positives = 160/314 (50%), Gaps = 20/314 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL + R  +L +L +ER L+  T+ +YE D R +L FL      +        +   ++ 
Sbjct: 35  ELERCRGEYLNHLTVERNLAANTIAAYERDLRAYLAFLGERGTRR-----PDDVIRRDVE 89

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F++ +R     D S+ R+LS +K F +++ +  +++ +    +R  K  + LP  ++ +
Sbjct: 90  DFVAAKRADHAADASVNRALSAVKGFHRFMVREGLSSVNPTATLRVPKMGDHLPDVISIE 149

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
            A  L+D     T+        R+ A+L +LYGCGLR SE   L    +  D+  +R+ G
Sbjct: 150 AAERLLDQDFPATAA-----GMRDRAVLEVLYGCGLRASELCGLDVNEVYLDEGFVRVMG 204

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYI 247
           KG K R+VPL+ + R+ +  Y      +L  + +       +F  +RG  L+        
Sbjct: 205 KGSKERLVPLVGTARRVLGTYLAEARSELFSHTRSASASAAVFLNMRGTRLSRQSVHAIC 264

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +  R +G+      HTLRHSFATH+L+ G DLR++Q ILGH  ++TTQIYT+++     
Sbjct: 265 ERYGRMVGID-GLHPHTLRHSFATHMLAGGADLRALQEILGHADIATTQIYTHID----R 319

Query: 308 DWMMEIYDQTHPSI 321
             + E+Y   HP  
Sbjct: 320 TQLREVYLAAHPRA 333


>gi|283788448|ref|YP_003368313.1| tyrosine recombinase [Citrobacter rodentium ICC168]
 gi|282951902|emb|CBG91620.1| tyrosine recombinase [Citrobacter rodentium ICC168]
          Length = 298

 Score =  266 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 89/309 (28%), Positives = 151/309 (48%), Gaps = 17/309 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L  L +E+ L++ TL +Y  D    + +LA          ++      +++A 
Sbjct: 5   LARIEQFLDALWLEKNLAENTLSAYRRDLTMLVEWLAHRK------ASLETAQSEDLQAL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R        S  R LS ++   ++L + KI  +     + + K    LP+ L+E Q 
Sbjct: 59  LAERMDGGYKATSTARLLSAVRRLFQHLYREKIRPDDPSAALASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+   ++        ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG
Sbjct: 119 ERLLQAPVVDQP-----LELRDKAMLEILYATGLRVSELVGLTMSDVSLRQGVVRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y     P+ LN      LF   R + +    F   I+     
Sbjct: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHPSI 321
           ++ Q HP  
Sbjct: 290 LHQQHHPRA 298


>gi|191174259|ref|ZP_03035768.1| tyrosine recombinase XerC [Escherichia coli F11]
 gi|300979372|ref|ZP_07174530.1| tyrosine recombinase XerC [Escherichia coli MS 200-1]
 gi|190905442|gb|EDV65072.1| tyrosine recombinase XerC [Escherichia coli F11]
 gi|300308044|gb|EFJ62564.1| tyrosine recombinase XerC [Escherichia coli MS 200-1]
 gi|324014716|gb|EGB83935.1| tyrosine recombinase XerC [Escherichia coli MS 60-1]
          Length = 298

 Score =  266 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 89/311 (28%), Positives = 153/311 (49%), Gaps = 17/311 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+      + F +     +  +Q+ +Q   T +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIIHFAS-----ENGLQSWQQCDVTMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DMSRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHPSITQ 323
           +YD  HP   +
Sbjct: 286 VYDAAHPRAKR 296


>gi|227504282|ref|ZP_03934331.1| site-specific tyrosine recombinase XerD [Corynebacterium striatum
           ATCC 6940]
 gi|227199121|gb|EEI79169.1| site-specific tyrosine recombinase XerD [Corynebacterium striatum
           ATCC 6940]
          Length = 298

 Score =  266 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 90/303 (29%), Positives = 145/303 (47%), Gaps = 12/303 (3%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q WL +L +E+G S  TL +Y  D R++L +LA        I  +  +    +  ++   
Sbjct: 8   QTWLNHLAVEKGASANTLSNYRRDVRRYLGWLADN-----GIDDLADVDRGMVEEYLKFL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R       + +  +   +   K+     +        +   K +  LP  L   +   L+
Sbjct: 63  RGGLAAASASRALIVA-RGLHKFGVAEGVLDVDVAGEVAPPKNAAHLPETLRVDEVEKLI 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D+  +        ID R+ A+L +LYG G RISE ++L+  ++ D+   L + GKG+K R
Sbjct: 122 DS--VPDGETATPIDIRDRALLEMLYGTGARISEVIALSVDDMSDNDGILVLTGKGNKQR 179

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VP+    +KA+ EY       L+      LF   RG  L+       ++   +  GL  
Sbjct: 180 MVPVGSQAQKAVEEYLVRARPVLSKGKSHALFLNTRGGALSRQSAWAALKLAVQRAGLNK 239

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           S + HTLRHSFATHLL  G D+R++Q +LGH  ++TTQIYT+V      D + E++   H
Sbjct: 240 SISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVT----ADSLREVWRTAH 295

Query: 319 PSI 321
           P  
Sbjct: 296 PRA 298


>gi|323358629|ref|YP_004225025.1| site-specific recombinase XerD [Microbacterium testaceum StLB037]
 gi|323275000|dbj|BAJ75145.1| site-specific recombinase XerD [Microbacterium testaceum StLB037]
          Length = 309

 Score =  266 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 95/318 (29%), Positives = 146/318 (45%), Gaps = 18/318 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL +  + +L+++ +ERGLS  T+ +Y  D   ++ +L         +  I  ++   I 
Sbjct: 2   ELERAVEGYLRHVALERGLSDHTVAAYRRDLAVYIEWL-----RGRGVDAIETVTPALIA 56

Query: 73  AFISKRRTQKI--GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
            F ++R + +      SL R  S ++   ++L       +     +R  K    LP+AL 
Sbjct: 57  DFAAERASAEPPPASSSLARLQSSVRGLHRFLVLEGRVDDDPSGRLRPPKAPRRLPKALT 116

Query: 131 EKQALTLVDNVLLHTSHET----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             Q   L+D              +    R+ A+L LLY  G R+SE + L   + +    
Sbjct: 117 IGQVNELLDAAGPAPGSSDASVAEPAAVRDRALLELLYATGARVSEIVQLDVDDTVHGD- 175

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQ 244
            LR++GKGDK R+VP+    R AI  Y       L         LF G+RG PL+     
Sbjct: 176 LLRVRGKGDKERVVPVGSYARAAIEAYLTRVRPALAAKGRATPRLFLGVRGAPLSRQSAW 235

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             I+       L    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT+V   
Sbjct: 236 LIIQAAAERASLTAHVSPHTLRHSFATHLLQGGADVRVVQELLGHASVATTQIYTHVT-- 293

Query: 305 NGGDWMMEIYDQTHPSIT 322
              D + ++Y   HP   
Sbjct: 294 --VDALRDVYAGAHPRAR 309


>gi|189423412|ref|YP_001950589.1| tyrosine recombinase XerC [Geobacter lovleyi SZ]
 gi|254799343|sp|B3E1H7|XERC_GEOLS RecName: Full=Tyrosine recombinase xerC
 gi|189419671|gb|ACD94069.1| tyrosine recombinase XerC [Geobacter lovleyi SZ]
          Length = 317

 Score =  266 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 101/322 (31%), Positives = 162/322 (50%), Gaps = 17/322 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL  +   +L+ L  +R  S  T+ +Y  D   F  F+       ++ +T+  L      
Sbjct: 3   ELAHQVARFLEFLATQRSASPHTIAAYRNDLNGFSSFVRSERGNTVSTKTVDHLLLRLYL 62

Query: 73  AF----ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           A     + K++       S+ R L+ +++F  +L + +    +    +   K+   LP  
Sbjct: 63  ASLNGGLDKQQRAGYAKSSIGRKLAAVRAFFGWLVRTRQLEVNPAELIATPKREQRLPFH 122

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           LN  Q +TL++        +  +  AR++AIL LLY  GLR+SE   L   ++      +
Sbjct: 123 LNIDQTVTLIEAPGHTGQEQPTF--ARDTAILELLYSSGLRVSELTGLAVADLDRAAGMV 180

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R+QGKG K RIVP+  +  +A+ +Y        +     PLF G RG  +N     + ++
Sbjct: 181 RVQGKGGKERIVPVGSAALEALEQYLAGRGQLAD---DAPLFLGCRGARINRRTVAQLVK 237

Query: 249 QLRRYLGLP--LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +     G+P   S + HTLRH+FATH+L  G DLRSIQ +LGH  LSTTQ YT+V    G
Sbjct: 238 RWA--SGIPAFRSISPHTLRHTFATHMLEGGADLRSIQELLGHSSLSTTQKYTHV----G 291

Query: 307 GDWMMEIYDQTHPSITQKDKKN 328
            D ++E+YD+ HP   + D++N
Sbjct: 292 LDRLLEVYDKAHPRARETDQQN 313


>gi|168786649|ref|ZP_02811656.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC869]
 gi|189373217|gb|EDU91633.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC869]
          Length = 298

 Score =  266 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 88/311 (28%), Positives = 151/311 (48%), Gaps = 17/311 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+      + F +     +  +Q  +Q     +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFAS-----ENGLQNWQQCDAAMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKTPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DINRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVIG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNALSWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHPSITQ 323
           +YD  HP   +
Sbjct: 286 VYDAAHPRAKR 296


>gi|156932654|ref|YP_001436570.1| site-specific tyrosine recombinase XerD [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156530908|gb|ABU75734.1| hypothetical protein ESA_00437 [Cronobacter sakazakii ATCC BAA-894]
          Length = 319

 Score =  266 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 90/316 (28%), Positives = 154/316 (48%), Gaps = 17/316 (5%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E+   + L   + +L  L +ER L++ +L +Y  D    + +L           ++  + 
Sbjct: 19  EVAVEQDLARIEQFLDALWLERNLAENSLSAYRRDLSMVVEWLHHRG------LSLATVQ 72

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
             +++  +++R        S  R LS ++   ++L + KI  +     + + K    LP+
Sbjct: 73  SGDLQTLLAERVEGGYKATSTARMLSAVRRLFQHLYREKIRDDDPSALLASPKLPQRLPK 132

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L+E Q   L     L      + I+ R+ A+L +LY  GLR+SE + LT  ++   Q  
Sbjct: 133 DLSEAQVERL-----LQAPTVEEPIELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGV 187

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           +R+ GKG+K R+VPL       + +Y     P+ LN      LF   R + +    F   
Sbjct: 188 VRVIGKGNKERLVPLGEEAVYWLEQYLTHGRPWLLNGQSLDILFPSNRARQMTRQTFWHR 247

Query: 247 IRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           I+   +  G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++ 
Sbjct: 248 IKHYAQLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 307

Query: 306 GGDWMMEIYDQTHPSI 321
               + +++ Q HP  
Sbjct: 308 ----LRQLHQQHHPRA 319


>gi|329296874|ref|ZP_08254210.1| tyrosine recombinase XerD [Plautia stali symbiont]
          Length = 297

 Score =  266 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 92/306 (30%), Positives = 150/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L  ER L++ TL SY  D +    +L  +       +T+  L   +++ F+++
Sbjct: 7   IEQFLDALWTERNLAQNTLASYRQDLQTLTAWLHHHE------RTLLSLEAADLQQFLAE 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R+LS ++   +YL + K+ ++     +   K    LP+ L+E Q   L
Sbjct: 61  RIEGGYKATSSARTLSAMRRLFQYLYREKLRSDDPSALLSAPKLPQRLPKDLSENQVERL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +             ++ R+ A+L LLY  GLR+SE + LT  ++   Q  +R+ GKG+K 
Sbjct: 121 L-----QAPATDIPLELRDKAMLELLYATGLRVSELVGLTLSDVSLRQGVVRVIGKGNKE 175

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       +  Y     P+ LN      LF   R + +    F   I+      G+
Sbjct: 176 RLVPLGEEAIYWLEHYMEHGRPWLLNGQTIDVLFPSNRAQQMTRQTFWHRIKHYATLAGI 235

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 236 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 291

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 292 QHHPRA 297


>gi|317485554|ref|ZP_07944431.1| tyrosine recombinase XerD [Bilophila wadsworthia 3_1_6]
 gi|316923234|gb|EFV44443.1| tyrosine recombinase XerD [Bilophila wadsworthia 3_1_6]
          Length = 336

 Score =  266 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 90/306 (29%), Positives = 147/306 (48%), Gaps = 16/306 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            WL  L  ERGLS+ T+ +Y  D      FL            +  L    I  FI+  R
Sbjct: 33  RWLDGLIAERGLSRNTVAAYRQDLDALQDFLDELE------TPLSGLDDENITLFIAWLR 86

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +    R+L R +S ++SFL +  +R     +    +   K  + LP  L + + + L+ 
Sbjct: 87  KRGDATRTLARRISSLRSFLAWCVERGELASNPAALIDTPKLPSLLPDVLTQDEIVRLL- 145

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
               +    T  +  R+ A+L LLY  G+R+SE + L P ++   +  +RI GKG K R+
Sbjct: 146 ----NAPDATSKLGLRDRAMLELLYAAGMRVSELIELQPIDLDLQRGVVRIFGKGSKERL 201

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPL  +    + EY  +    L   ++  +F    G  L+     + +++     G+   
Sbjct: 202 VPLHDAAVMRMAEYLKI-VRPLFTPVEDRVFLNRSGNGLSRQGVWKLVKRYALEAGIRKP 260

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HT RHSFATHLL  G DLRS+Q +LGH  +S T++YT+V S+     +++I+ + HP
Sbjct: 261 ISPHTFRHSFATHLLEGGADLRSVQILLGHADMSATELYTHVQSER----LLQIHRKYHP 316

Query: 320 SITQKD 325
                +
Sbjct: 317 RSQHAE 322


>gi|220929173|ref|YP_002506082.1| tyrosine recombinase XerD [Clostridium cellulolyticum H10]
 gi|219999501|gb|ACL76102.1| tyrosine recombinase XerD [Clostridium cellulolyticum H10]
          Length = 294

 Score =  266 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 156/309 (50%), Gaps = 16/309 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +    + ++  LE ++ LS  TLQSY+ D  Q++ +L     ++I +  I   + T + A
Sbjct: 1   MEANVEKFINFLERDKRLSLNTLQSYKRDIEQYITYL-----KEINVTNIVNTNKTTVIA 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++   + +     ++ R+L+ I+SF ++L K K+        + + K    LP+ L+ ++
Sbjct: 56  YLLHLQKKGRATSTISRNLASIRSFYQFLYKDKVIDNDPTSELESPKVEKKLPQILSTQE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D               R+ A+L LLY  G+R+SE +SL   +I  D   ++   K
Sbjct: 116 VELLLDQ-----PKCLDLKGIRDKAMLELLYATGIRVSELISLNLDDINFDLGLIKCN-K 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G + R +P+      A+ EY +    F +  + ++ LF  + GK L    F + I+  + 
Sbjct: 170 GTRERTIPIGSISTAAVHEYLEKSRNFLIQDSQEIALFVNVNGKRLTRQGFWKIIKHYKN 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +    T HTLRHSFA HLL NG DLRSIQ +LGH  +S+TQIY  +      + + +
Sbjct: 230 QAKINKDITPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQI----AKNKIKD 285

Query: 313 IYDQTHPSI 321
           +Y +THP  
Sbjct: 286 VYKKTHPRA 294


>gi|127511704|ref|YP_001092901.1| tyrosine recombinase XerD [Shewanella loihica PV-4]
 gi|126636999|gb|ABO22642.1| tyrosine recombinase XerD [Shewanella loihica PV-4]
          Length = 303

 Score =  266 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 96/304 (31%), Positives = 147/304 (48%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L +L   +GLS  TLQ+Y  D   F  +L           ++   S  E+R +++ 
Sbjct: 14  IEPFLDDLWAAKGLSDHTLQAYRSDLSHFDRYLNKQG------SSLLSTSQAEVRDYLAL 67

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++ F KYL  +K+     +  ++  K +  LP AL+E     L
Sbjct: 68  RVEHGFAKTSSARLLSSLRRFYKYLLAKKLIEVDPMAMIKPPKLARKLPDALSEADVDRL 127

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +        +    ++AR+ A+L LLY  GLR+SE + LT   +   Q  +RI GKG K 
Sbjct: 128 LSE-----PNREDPVEARDRAMLELLYASGLRVSELVGLTLDQMSLRQGVVRIVGKGSKE 182

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP        I +Y     F+L        +F   RG  +    F   I+   +  G+
Sbjct: 183 RLVPFGEQAGAEIEDYLKAARFELLKGKASDVVFPSKRGNMMTRQTFWHRIKLYAQRAGI 242

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            +  + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + +++  
Sbjct: 243 AVHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKAR----LAQLHQA 298

Query: 317 THPS 320
            HP 
Sbjct: 299 HHPR 302


>gi|302185529|ref|ZP_07262202.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           syringae 642]
          Length = 298

 Score =  266 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 96/304 (31%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GLS  T  SY  D   F  +L     + I+           I   ++ 
Sbjct: 9   IDQFLDALWLEKGLSDNTRDSYRSDLALFHGWLQERNVDLISA------GREVILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R       RS  R LSG + F +YL + K+ +    L +   +    LP++L+E     L
Sbjct: 63  RVENAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +          ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K 
Sbjct: 123 L-----AAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y        L       LF   RG+ +    F   I+      G+
Sbjct: 178 RLVPMGEESIVWVERYLRGARDELLGGKPSDVLFPSTRGEQMTRQTFWHRIKHQATVAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ +
Sbjct: 238 GKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHV----ARARLQEMHAR 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|117928448|ref|YP_872999.1| tyrosine recombinase XerD [Acidothermus cellulolyticus 11B]
 gi|117648911|gb|ABK53013.1| tyrosine recombinase XerD [Acidothermus cellulolyticus 11B]
          Length = 311

 Score =  266 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 95/314 (30%), Positives = 151/314 (48%), Gaps = 24/314 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L ++ +E+GL+K T+  Y  D R++  FL     E+      R ++   I AF++ 
Sbjct: 10  VEAYLAHVAVEKGLAKNTVAGYRRDLRRYQEFL-----EQRGTTDPRAVTEEHITAFLAA 64

Query: 78  RRTQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            RT       +   S  R++  ++   ++     IT +    ++R       LP+A+   
Sbjct: 65  LRTGDADHPPLAVSSSARAVVAVRGLHRFAAMDGITADDPSRDVRPPTPGRRLPKAITVA 124

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L+  V  H   E +     + A+L +LYG G RISEA+ L   ++  D   +R++G
Sbjct: 125 EVERLLAAVDGHAPRELR-----DRALLEVLYGTGARISEAVGLAIDDLDLDAGLVRLRG 179

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDL-----NLNIQLPLFRGIRGKPLNPGVFQRYI 247
           KG K R+VPL    R A+ EY       L     + + +  +F   RG  L+       +
Sbjct: 180 KGSKQRVVPLGGYARSALREYLTAGRPALLAAARSGSARGAVFLNARGGRLSRQSAWTVL 239

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           R+     GL    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V      
Sbjct: 240 RRAALRAGLATVISPHTLRHSFATHLLEGGADIRVVQELLGHASVTTTQIYTLVT----V 295

Query: 308 DWMMEIYDQTHPSI 321
           D + E+Y   HP  
Sbjct: 296 DTLREVYAMAHPRA 309


>gi|222035509|emb|CAP78254.1| Tyrosine recombinase xerC [Escherichia coli LF82]
 gi|312948364|gb|ADR29191.1| site-specific tyrosine recombinase XerC [Escherichia coli O83:H1
           str. NRG 857C]
 gi|324007468|gb|EGB76687.1| tyrosine recombinase XerC [Escherichia coli MS 57-2]
          Length = 298

 Score =  266 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 90/311 (28%), Positives = 154/311 (49%), Gaps = 17/311 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+      + F +     +  +Q+ +Q   T +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIIHFAS-----ENGLQSWQQCDVTMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHPSITQ 323
           +YD THP   +
Sbjct: 286 VYDATHPRAKR 296


>gi|289675164|ref|ZP_06496054.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           syringae FF5]
          Length = 298

 Score =  266 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 96/304 (31%), Positives = 143/304 (47%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GLS  T  SY  D   F  +L     + I+           I   ++ 
Sbjct: 9   IDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLISA------GREVILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R       RS  R LSG + F +YL + K+ +    L +   +    LP++L+E     L
Sbjct: 63  RVENAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +          ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K 
Sbjct: 123 L-----AAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y        L       LF   RG  +    F   I+      G+
Sbjct: 178 RLVPMGEESIVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ +
Sbjct: 238 GKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHV----ARARLQELHAR 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|254508806|ref|ZP_05120917.1| tyrosine recombinase XerC [Vibrio parahaemolyticus 16]
 gi|219548263|gb|EED25277.1| tyrosine recombinase XerC [Vibrio parahaemolyticus 16]
          Length = 310

 Score =  266 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 83/328 (25%), Positives = 158/328 (48%), Gaps = 18/328 (5%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M  +  P  +   L K  + + + L  E+GLS  T ++Y+         L      ++ +
Sbjct: 1   MSESATP--LPNGLQKPLERFYEYLRSEKGLSLHTQRNYKQQLETMAQHLV-----QLGL 53

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           +   Q+    +R   SK     +   SL   LS ++SF  +L  R   + +    +   +
Sbjct: 54  KDWSQVDSAWVRQLASKGMRDGMKASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPR 113

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K   LP+ L+  +   L++       +E   +  R+ A++ ++YG GLR++E +S+  ++
Sbjct: 114 KKRPLPKNLDVDEVGQLLEV------NEDDPLSIRDRAMMEMMYGAGLRLAELVSINVKD 167

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           +      +R+ GKGDK R VP      + + ++  +    L  + +  LF    G  ++ 
Sbjct: 168 VSFFSGEIRVVGKGDKERKVPFSGMASEWVGKWMKVRGT-LAKSDEPALFVSKLGVRISH 226

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              Q+ + +  +   +    + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+
Sbjct: 227 RNVQKRMAEWGQKQAVASHISPHKLRHSFATHVLESSNNLRAVQELLGHENISTTQIYTH 286

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           ++ ++    + E+YDQ HP   ++  K 
Sbjct: 287 LDFQH----LAEVYDQAHPRAKKRSNKE 310


>gi|119478678|ref|ZP_01618568.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143]
 gi|119448404|gb|EAW29656.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143]
          Length = 300

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 95/304 (31%), Positives = 159/304 (52%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  + +ERG+S+ TL SY  D  QF  +L    +++ T+  +R+    +I A+++ 
Sbjct: 11  IDAFLDGIWMERGVSENTLSSYRQDLMQFNQWL---LDQQTTMLAVRK---NDIEAYLAF 64

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  +KI  RS  R LS ++ F +Y  +    +    L++ + K    LP++L+E+    L
Sbjct: 65  RLMRKISARSTARLLSCLRGFYQYQLRESRISLDPTLDIDSPKMGRPLPKSLSEQDVEAL 124

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +     +     + ++ R+ A+L LLY  GLR++E ++L    +  +Q  +R+ GKG K 
Sbjct: 125 L-----NAPDTDEPLELRDKAMLELLYASGLRVTELITLQVGQLSVNQGVVRVMGKGSKE 179

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP        +  Y     P  L   +   +F   RG  +    F   I+   +  G+
Sbjct: 180 RLVPTGEEALDWLQRYMKDGRPALLGARMSDTMFPSRRGAVMTRQTFWYRIKIYAQRAGI 239

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S + HTLRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     M +++ Q
Sbjct: 240 RQSLSPHTLRHAFATHLINHGADLRVVQLLLGHSDLSTTQIYTHVAKER----MKDLHAQ 295

Query: 317 THPS 320
            HP 
Sbjct: 296 HHPR 299


>gi|21957074|gb|AAM83976.1|AE013639_5 site-specific recombinase [Yersinia pestis KIM 10]
          Length = 308

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 85/323 (26%), Positives = 154/323 (47%), Gaps = 18/323 (5%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+   + E  S  L  + + +L+ L IER LS LT+ SY       +        E++ +
Sbjct: 1   MDRAGMTEF-SASLAPQVEAFLRYLSIERQLSPLTVTSYRRQLSALMEI-----GEQMGL 54

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
              + L   ++R+ +S+ +   +   SL   LS ++SFL +L  + +   +    +   +
Sbjct: 55  AHWQTLDAAQVRSLVSRSKRAGLHASSLALRLSALRSFLNWLVSQGVLPANPAKGVSTPR 114

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LP+ ++  +   L+   L         +  R+ A+L ++YG GLR+SE + +  ++
Sbjct: 115 SGRHLPKNIDVDEVNKLLSIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGMNCKH 168

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           +      + + GKG K R VPL  +    +  +  L   +L       +F    GK ++ 
Sbjct: 169 VDLASGDVWVMGKGSKERKVPLGKTAVTWLQHWLALR--ELFEPQDDAIFLANTGKRISA 226

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              Q+   +     G+      H LRHSFATH+L + GDLR++Q +LGH  L+TTQIYT+
Sbjct: 227 RNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH 286

Query: 301 VNSKNGGDWMMEIYDQTHPSITQ 323
           ++ ++    +  +YD  HP   +
Sbjct: 287 LDFQH----LATVYDAAHPRAKR 305


>gi|59711055|ref|YP_203831.1| site-specific tyrosine recombinase XerD [Vibrio fischeri ES114]
 gi|197335240|ref|YP_002155204.1| tyrosine recombinase XerD [Vibrio fischeri MJ11]
 gi|59479156|gb|AAW84943.1| site-specific tyrosine recombinase [Vibrio fischeri ES114]
 gi|197316730|gb|ACH66177.1| tyrosine recombinase XerD [Vibrio fischeri MJ11]
          Length = 298

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 156/308 (50%), Gaps = 17/308 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +   + +L  + +ERGLS+ TL SY  D  + L +L    +      +I  +   E +A+
Sbjct: 5   MALMERFLDTMWMERGLSENTLASYRNDLVKLLQWLE---DNHYKCASISAMGLNEFQAY 61

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +     ++    S  R LS ++ F +YL + KI  +     + + K    LP+ L+E+Q 
Sbjct: 62  LV---DKEYKQTSRARMLSALRRFFQYLHREKIRGDDPTALLASPKLPQRLPKDLSEEQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+     +  +    ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG
Sbjct: 119 DALL-----NAPNVEDPLELRDRAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           DK R+VP+  +    I ++     P  L       +F   R K +    F   I+     
Sbjct: 174 DKERLVPMGENAVDWIEQFLTHGRPMLLGEKSSDVVFPSKRAKQMTRQTFWHRIKHYAVI 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSDKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQ 289

Query: 313 IYDQTHPS 320
           I+ + HP 
Sbjct: 290 IHQEHHPR 297


>gi|188026224|ref|ZP_02961334.2| hypothetical protein PROSTU_03358 [Providencia stuartii ATCC 25827]
 gi|188022113|gb|EDU60153.1| hypothetical protein PROSTU_03358 [Providencia stuartii ATCC 25827]
          Length = 307

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 93/320 (29%), Positives = 159/320 (49%), Gaps = 17/320 (5%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
             N+  + + +L    + +L  + +E+ L++ TL SY  D +    +L     +  ++Q+
Sbjct: 2   KRNISSVETKQLNPLIEQFLDTIWLEQDLAENTLASYRLDLQLLDKWLEANQLDLESVQS 61

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           I      ++++F+++R        S  R LS ++   +Y  + KI  +     +   K  
Sbjct: 62  I------DLQSFLAERIEGGYKAASSARLLSAMRRLFQYFYREKIRLDDPSAVIAAPKIP 115

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             LP+ L+E+Q   L     L+       ++ R+ A+L +LY CGLR+SE + LT  +I 
Sbjct: 116 QRLPKDLSEQQVEDL-----LNAPATEDPLELRDKAMLEVLYACGLRVSELVGLTFSDIS 170

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPG 241
             Q  +R+ GKG+K R++PL       + +Y +    DL N      LF   RG  +   
Sbjct: 171 LRQGVIRVVGKGNKERLIPLGEEAIYWVEKYLEEGRPDLLNGKASDVLFPSKRGTKMTRQ 230

Query: 242 VFQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            F   I+       +     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+
Sbjct: 231 TFWHRIKHYAVIANIDSEALSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTH 290

Query: 301 VNSKNGGDWMMEIYDQTHPS 320
           V ++     +  +++Q HP 
Sbjct: 291 VATER----LRMLHEQHHPR 306


>gi|126650133|ref|ZP_01722366.1| site-specific tyrosine recombinase XerD [Bacillus sp. B14905]
 gi|126593305|gb|EAZ87267.1| site-specific tyrosine recombinase XerD [Bacillus sp. B14905]
          Length = 300

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 96/311 (30%), Positives = 152/311 (48%), Gaps = 15/311 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E     ++++  +++ER LS  TL SY  D   ++ FL    +    +    ++  T I 
Sbjct: 3   EFQYAVEDYIHFIQVERQLSVNTLASYRRDLESYVNFL----QNAEGMADFNRVERTTIL 58

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
             + + R Q    R++ R +S I+SF ++L + K       +++        LP  L+ +
Sbjct: 59  RHLEQLRAQGKTSRTIARHISSIRSFHQFLLREKRAESDPTVHLEMPTIEQKLPNILSIE 118

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L+        + +K    R+ A+L LLYG G+RISE ++L   +I      +R+ G
Sbjct: 119 EIEALL-----TAPNRSKPQGIRDLAMLELLYGSGMRISELIALDLADIHLTMGFVRVFG 173

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQL 250
           KG K RI+PL  S   AI  Y +     L          F   RGK L      + +++ 
Sbjct: 174 KGGKERIIPLGKSALSAISTYLNNARGQLQGKYPKTDAFFINQRGKRLTRQGCWKLMKEH 233

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+    T HTLRHSFATHL+ NG DLR++Q +LGH  +STTQIYT+++       +
Sbjct: 234 ALKAGIQHELTPHTLRHSFATHLVENGADLRAVQEMLGHADISTTQIYTHISKTR----L 289

Query: 311 MEIYDQTHPSI 321
            E+Y Q HP  
Sbjct: 290 SEVYKQFHPRA 300


>gi|229515837|ref|ZP_04405295.1| tyrosine recombinase XerC [Vibrio cholerae TMA 21]
 gi|229347100|gb|EEO12061.1| tyrosine recombinase XerC [Vibrio cholerae TMA 21]
          Length = 311

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 81/328 (24%), Positives = 164/328 (50%), Gaps = 17/328 (5%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+ + L   +   L +  + +   L  E+GLS+ T ++Y+        +L      ++ +
Sbjct: 1   MKNDEL-TPLPDALAQPLERFYAYLHTEKGLSQYTQRNYKQQLETMTQYLV-----QVGL 54

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
               QL    +R  + + + Q +   S+   LS ++SFL +L  R     +    +   +
Sbjct: 55  THWSQLDSAWVRQLVMQGKRQGMKASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPR 114

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K  +LP+ L+  +   L++        +   +  R+ AI+ L+YG GLR++E +S+  ++
Sbjct: 115 KQRTLPKNLDVDEMAQLLEVT------DDDPLSIRDRAIMELMYGAGLRLAELVSIDVKD 168

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           +   +  +R+ GKG+K R V      ++ + ++  L    L  + +  LF    G  ++ 
Sbjct: 169 VNLSEGEIRVIGKGNKERKVWFAGQAQEWVGKWLKLRS-QLADSAETALFVSKLGTRISH 227

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              Q+ + +  +   +    + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+
Sbjct: 228 RSVQKRMAEWGQKQAVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH 287

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           ++ ++    + ++YDQ HP   +K+K +
Sbjct: 288 LDFQH----LAQVYDQAHPRARKKNKDD 311


>gi|241667835|ref|ZP_04755413.1| site-specific recombinase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876378|ref|ZP_05249088.1| site-specific recombinase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842399|gb|EET20813.1| site-specific recombinase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 292

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 145/308 (47%), Gaps = 18/308 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +      +L NL +E GLS+ T+ SY  D +    + +           +  L + ++ A
Sbjct: 1   MSTAVDAFLDNLWLEHGLSQNTISSYRTDLKFLQSYFSQVE--------LINLDFEQLYA 52

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           FIS R       RS  R +S ++ F  +L      T +    +   K +  LP+ + E  
Sbjct: 53  FISYRSKNGYSSRSNARMISTLRKFYNWLISTGQATTNPTTKLTLPKLAKRLPKDMTEVD 112

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+          T  I  R+ A+L L+Y  GLR+SE + L   +I  +   +++ GK
Sbjct: 113 VERLL-----QAPDLTDDIGIRDKAMLELMYATGLRVSELVGLNTNDIDLNVGVIQVMGK 167

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K RIVP+     + + +Y++     L  N  +  +F     K +    F   I+    
Sbjct: 168 GSKERIVPIGEYALEYLHKYFEESRESLAKNFKEKAVFISKHSKRITRQSFWHRIKSYAL 227

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    + HTLRH+FATHLL++G DLRS+Q +LGH  +STT IYT+++       + E
Sbjct: 228 IAGINTDISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR----LQE 283

Query: 313 IYDQTHPS 320
           IY + HP 
Sbjct: 284 IYQKHHPR 291


>gi|91226786|ref|ZP_01261439.1| tyrosine recombinase [Vibrio alginolyticus 12G01]
 gi|269964519|ref|ZP_06178759.1| tyrosine recombinase [Vibrio alginolyticus 40B]
 gi|91188917|gb|EAS75201.1| tyrosine recombinase [Vibrio alginolyticus 12G01]
 gi|269830756|gb|EEZ84975.1| tyrosine recombinase [Vibrio alginolyticus 40B]
          Length = 305

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 91/306 (29%), Positives = 150/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + +ERGLS+ TL SY  D  + L+++  +         +  +S + ++ + S 
Sbjct: 15  VEQFLDAMWMERGLSENTLASYRNDLMKLLVWMEKHRYR------LDFISLSGLQEYQSH 68

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    S  R LS I+   +YL + K+  +     + + K    LP+ ++E+Q   L
Sbjct: 69  LVDLDYKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQVDAL 128

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++            I+ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG K 
Sbjct: 129 LE-----APDPNDPIELRDKAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGGKE 183

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +    I  +     P  L       +F   R + +    F   I+      G+
Sbjct: 184 RLVPMGENAVDWIETFIQQGRPALLGDTSSDIVFPSKRARQMTRQTFWHRIKYYALIAGI 243

Query: 257 PLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +I+ 
Sbjct: 244 DTDQLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIHS 299

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 300 QHHPRA 305


>gi|303241573|ref|ZP_07328073.1| tyrosine recombinase XerD [Acetivibrio cellulolyticus CD2]
 gi|302590891|gb|EFL60639.1| tyrosine recombinase XerD [Acetivibrio cellulolyticus CD2]
          Length = 294

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 92/303 (30%), Positives = 151/303 (49%), Gaps = 16/303 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  LE ++ LS  TLQSY  D  Q++ +L      +I +Q I   + T +  ++   +
Sbjct: 7   KFLTFLEKDKRLSLNTLQSYRRDIEQYITYL-----NEIKLQNISNTNKTTVITYLLHLQ 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +     ++ R+L+ I+SF +YL K  + +      + + K    LP+ L+ K+   L+D
Sbjct: 62  KKGRATSTISRNLASIRSFYQYLTKNGVISGDPTEELESPKVEKKLPQILSTKEVELLLD 121

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                          R+ A+L LLY  G+R+SE + L   +I  D   ++   KG + R+
Sbjct: 122 Q-----PKCDDLKGFRDKAMLELLYATGIRVSELICLNVLDINLDMGFIKCN-KGTRERM 175

Query: 200 VPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +P+     +A+ EY        +  + +  LF  + GK L    F + I+Q +    +  
Sbjct: 176 IPIGSLSIQALNEYLAKSRNLLIQRSDEKALFVNVNGKRLTRQGFWKIIKQYKNLAKINK 235

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             T HTLRHSFA HLL NG DLRSIQ +LGH  +S+TQ+Y  +      + + E+Y +TH
Sbjct: 236 DITPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQVYAQI----AKNRIKEVYKKTH 291

Query: 319 PSI 321
           P  
Sbjct: 292 PRA 294


>gi|1916335|gb|AAC45774.1| site-specific recombinase [Salmonella enterica subsp. enterica
           serovar Typhimurium]
          Length = 298

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 151/309 (48%), Gaps = 17/309 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L  L +ER L++ TL +Y  D    + +L          +T+      +++  
Sbjct: 5   LARIEQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRG------KTLATAQADDLQTL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R        +  R LS ++ F ++L + K   +     + + K    LP+ L+E Q 
Sbjct: 59  LAERVEGGYKATTSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+   L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG
Sbjct: 119 ERLLQAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y     P+ LN      LF   R + +    F   I+     
Sbjct: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHPSI 321
           +++Q HP  
Sbjct: 290 LHEQHHPRA 298


>gi|319400839|gb|EFV89058.1| tyrosine recombinase XerD [Staphylococcus epidermidis FRI909]
          Length = 295

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 150/305 (49%), Gaps = 15/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  ++IE+GLS  T+ +Y  D +++  +L     E   I  I  +    I+  +  
Sbjct: 5   IDEYLNFIQIEKGLSNNTIGAYRRDLKKYKDYL-----EDNKISHIDFIDRQIIQECLGH 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                   +SL R +S I+SF ++  + K   +   + +   K    LP  L   + + L
Sbjct: 60  LIDMGQSSKSLARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEINEVIAL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++     T    K    R+  +L LLY  G+R++E + L  +++      +R+ GKG+K 
Sbjct: 120 LE-----TPDLAKNNGYRDRTMLELLYATGMRVTEIIQLDVEDVNLMMGFVRVFGKGNKE 174

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVPL  +V + +  Y   + P  L       LF  + GK L+     + I+Q      +
Sbjct: 175 RIVPLGDTVIEYLTTYIETVRPQLLKQTTTQALFLNMHGKSLSRQGIWKIIKQYGLKANI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + T HTLRHSFATHLL NG DLR++Q +LGH  +STTQ+YT+V+       + ++Y Q
Sbjct: 235 NKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYTQ 290

Query: 317 THPSI 321
            HP  
Sbjct: 291 FHPRA 295


>gi|16761825|ref|NP_457442.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16766345|ref|NP_461960.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29143312|ref|NP_806654.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62181554|ref|YP_217971.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161615991|ref|YP_001589956.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167550072|ref|ZP_02343829.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167994107|ref|ZP_02575199.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168231149|ref|ZP_02656207.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168236103|ref|ZP_02661161.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168261794|ref|ZP_02683767.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168463788|ref|ZP_02697705.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|194446221|ref|YP_002042295.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194470177|ref|ZP_03076161.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194471635|ref|ZP_03077619.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194738371|ref|YP_002115993.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197249597|ref|YP_002147956.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197265258|ref|ZP_03165332.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|198244272|ref|YP_002217021.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200387943|ref|ZP_03214555.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205353968|ref|YP_002227769.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207858307|ref|YP_002244958.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213051988|ref|ZP_03344866.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213425823|ref|ZP_03358573.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213646964|ref|ZP_03377017.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213857737|ref|ZP_03384708.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|224584833|ref|YP_002638631.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238909843|ref|ZP_04653680.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|60416276|sp|P0A2P6|XERD_SALTY RecName: Full=Tyrosine recombinase xerD
 gi|60416277|sp|P0A2P7|XERD_SALTI RecName: Full=Tyrosine recombinase xerD
 gi|25299270|pir||AB0872 site-specific integrase/recombinase [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16421595|gb|AAL21919.1| site-specific recombinase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16504127|emb|CAD02874.1| site-specific integrase/recombinase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138946|gb|AAO70514.1| site-specific integrase/recombinase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62129187|gb|AAX66890.1| recombinase, site-specific [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161365355|gb|ABX69123.1| hypothetical protein SPAB_03791 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404884|gb|ACF65106.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194456541|gb|EDX45380.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194457999|gb|EDX46838.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194713873|gb|ACF93094.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195633587|gb|EDX52001.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197213300|gb|ACH50697.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197243513|gb|EDY26133.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197290855|gb|EDY30209.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|197938788|gb|ACH76121.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199605041|gb|EDZ03586.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205273749|emb|CAR38744.1| site-specific integrase/recombinase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205324693|gb|EDZ12532.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205327977|gb|EDZ14741.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205334414|gb|EDZ21178.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205349044|gb|EDZ35675.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206710110|emb|CAR34465.1| site-specific integrase/recombinase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224469360|gb|ACN47190.1| tyrosine recombinase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261248176|emb|CBG26012.1| Tyrosine recombinase xerD [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995198|gb|ACY90083.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159600|emb|CBW19119.1| Tyrosine recombinase xerD [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312914065|dbj|BAJ38039.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321225719|gb|EFX50773.1| Tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322613442|gb|EFY10383.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322621034|gb|EFY17892.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322624098|gb|EFY20932.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628163|gb|EFY24952.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633282|gb|EFY30024.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636140|gb|EFY32848.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639478|gb|EFY36166.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647589|gb|EFY44078.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322648773|gb|EFY45220.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322653828|gb|EFY50154.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657934|gb|EFY54202.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664037|gb|EFY60236.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668952|gb|EFY65103.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673054|gb|EFY69161.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677955|gb|EFY74018.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681131|gb|EFY77164.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687939|gb|EFY83906.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322716035|gb|EFZ07606.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323131400|gb|ADX18830.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323194865|gb|EFZ80052.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323196616|gb|EFZ81764.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202684|gb|EFZ87724.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207829|gb|EFZ92775.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323212619|gb|EFZ97436.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323214898|gb|EFZ99646.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323222629|gb|EGA06994.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323225092|gb|EGA09344.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323230614|gb|EGA14732.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323235035|gb|EGA19121.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239074|gb|EGA23124.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244568|gb|EGA28574.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247183|gb|EGA31149.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253334|gb|EGA37163.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256359|gb|EGA40095.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262465|gb|EGA46021.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267439|gb|EGA50923.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269157|gb|EGA52612.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326624789|gb|EGE31134.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326629082|gb|EGE35425.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332989911|gb|AEF08894.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 298

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 150/309 (48%), Gaps = 17/309 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L  L +ER L++ TL +Y  D    + +L          +T+      +++  
Sbjct: 5   LARIEQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRG------KTLATAQADDLQTL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R        S  R LS ++ F ++L + K   +     + + K    LP+ L+E Q 
Sbjct: 59  LAERVEGGYKATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+   L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG
Sbjct: 119 ERLLQAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y     P+ LN      LF   R + +    F   I+     
Sbjct: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHPSI 321
           ++ Q HP  
Sbjct: 290 LHQQHHPRA 298


>gi|307823520|ref|ZP_07653749.1| tyrosine recombinase XerD [Methylobacter tundripaludum SV96]
 gi|307735505|gb|EFO06353.1| tyrosine recombinase XerD [Methylobacter tundripaludum SV96]
          Length = 294

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 90/304 (29%), Positives = 145/304 (47%), Gaps = 18/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  + +E+GLS+ TL +Y  D R F  +L          + I ++   ++  F+  
Sbjct: 7   IDQFLDAVWVEQGLSENTLSAYGSDLRIFAKWLKD--------KPILEVDGGQLSDFLEG 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  + IG+RS  R LS ++ F  Y  +           + +      LP++L+E     L
Sbjct: 59  RHKEGIGNRSTARILSSLRRFYGYYIRENSIKIDPTALIESPHIGQPLPKSLSELDVELL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D         T  +  R+  +L +LY  GLR+SE ++L  + I   Q  +RI GKG+K 
Sbjct: 119 LD-----APEVTNALGFRDRTMLEMLYATGLRVSELVNLKFEQISFRQGVVRIIGKGNKE 173

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       + EY        L       LF   R   +    F   I++  +   +
Sbjct: 174 RLVPVGEVAMGWLEEYMVQARKTILGERQCDYLFVTNRADSMTRQAFWHIIKRHAKKAQI 233

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT++  +     + E++ +
Sbjct: 234 NKELSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHIARER----LKELHSK 289

Query: 317 THPS 320
            HP 
Sbjct: 290 YHPR 293


>gi|66044534|ref|YP_234375.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           syringae B728a]
 gi|63255241|gb|AAY36337.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 298

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 95/304 (31%), Positives = 142/304 (46%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GLS  T  +Y  D   F  +L     + I+           I   ++ 
Sbjct: 9   IDRFLDALWLEKGLSDNTRDAYRSDLALFNGWLQERNVDLISA------GREVILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R       RS  R LSG + F +YL + K+      L +   +    LP++L+E     L
Sbjct: 63  RVDNAYKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +          ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K 
Sbjct: 123 L-----AAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y        L       LF   RG  +    F   I+      G+
Sbjct: 178 RLVPMGEESIVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ +
Sbjct: 238 GKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHV----ARARLQEMHAR 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|317049380|ref|YP_004117028.1| tyrosine recombinase XerD [Pantoea sp. At-9b]
 gi|316950997|gb|ADU70472.1| tyrosine recombinase XerD [Pantoea sp. At-9b]
          Length = 297

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 93/306 (30%), Positives = 151/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L IER L++ TL SY  D +    +L  +    +T++ +      +++ F+++
Sbjct: 7   IEQFLDTLWIERNLAQNTLASYRQDLQTLTGWLHHHERTLLTLEAL------DLQQFLAE 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R+LS I+   +YL + K+ ++     +   K    LP+ L+E Q   L
Sbjct: 61  RVEGGYKATSSARTLSAIRRLFQYLYREKLRSDDPSALLSAPKLPQRLPKDLSESQVERL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +             ++ R+ A+L LLY  GLR+SE + LT  ++   Q  +R+ GKG+K 
Sbjct: 121 L-----QAPSTEIPLELRDKAMLELLYATGLRVSELVGLTLSDVSLRQGVVRVIGKGNKE 175

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       I  Y     P+ LN      LF   R + +    F   I+      G+
Sbjct: 176 RLVPMGEEAIYWIEHYMTHGRPWLLNGQTLDVLFPSNRAQKMTRQTFWHRIKHYALLAGI 235

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  ++ 
Sbjct: 236 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRLLHQ 291

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 292 QHHPRA 297


>gi|262404730|ref|ZP_06081285.1| site-specific recombinase XerD [Vibrio sp. RC586]
 gi|262349762|gb|EEY98900.1| site-specific recombinase XerD [Vibrio sp. RC586]
          Length = 302

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 88/306 (28%), Positives = 149/306 (48%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  +  ERGL++ T+ SY  D  + L ++A +         +  +S++ ++ +   
Sbjct: 12  VEQFLDAMWFERGLAENTVASYRNDLSKLLGWMAQHQYR------LDFISFSGLQEYQIW 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q     S  R LS I+   +YL + K+  +     + + K    LP+ L E Q   L
Sbjct: 66  LTEQDYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLISPKLPTRLPKDLTEAQVEAL 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +             I+ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG K 
Sbjct: 126 L-----SAPDPQTPIELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVIGKGGKE 180

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +  + I  +        L       +F   RG+ +    F   I+       +
Sbjct: 181 RLVPMGENAVEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAEI 240

Query: 257 PLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            +   + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + ++++
Sbjct: 241 DVEQLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHN 296

Query: 316 QTHPSI 321
           + HP  
Sbjct: 297 EHHPRA 302


>gi|295399802|ref|ZP_06809783.1| tyrosine recombinase XerC [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312111686|ref|YP_003990002.1| tyrosine recombinase XerC [Geobacillus sp. Y4.1MC1]
 gi|294978205|gb|EFG53802.1| tyrosine recombinase XerC [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216787|gb|ADP75391.1| tyrosine recombinase XerC [Geobacillus sp. Y4.1MC1]
          Length = 300

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 100/308 (32%), Positives = 158/308 (51%), Gaps = 17/308 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             Q +++ L+IE+  S+ T+  Y+ D  QF  F+      +  I  + +++Y+++R +++
Sbjct: 7   ALQLFIEYLQIEKNYSQYTIVCYQRDIEQFFEFM-----NEQGIHDLAEVTYSDVRLYLT 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           K   QK   RS+ R +S ++SF K+L + K   E+        KK   +P  L E++   
Sbjct: 62  KLYEQKQSSRSVSRKISSLRSFYKFLLREKKVLENPFALAALPKKEQKIPNFLYEQELE- 120

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
               +L H +     I  RN A+L LLY  G+R+SE   +   +I    ST+ I GKG K
Sbjct: 121 ----ILFHVNDVNTAIGQRNQAMLELLYATGVRVSECCHIQLSDIDFSSSTILIHGKGSK 176

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNI---QLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            R VP     ++A+  Y      +L  N       LF   RG PL P   +  + ++ + 
Sbjct: 177 QRYVPFGRFAKEALERYIHHGRRELLQNAKAAHAYLFVNARGNPLTPRGARYILDEMVKK 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L    + H LRH+FATHLL+ G D+R++Q +LGH  LS+TQ+YT+V      D +  I
Sbjct: 237 AALTQHVSPHVLRHTFATHLLNEGADMRAVQELLGHAHLSSTQVYTHVT----KDRLRHI 292

Query: 314 YDQTHPSI 321
           Y QTHP  
Sbjct: 293 YLQTHPRA 300


>gi|330969023|gb|EGH69089.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 298

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 96/304 (31%), Positives = 142/304 (46%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GLS  T  SY  D   F  +L     + I+           I   ++ 
Sbjct: 9   IDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLISA------GREVILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R       RS  R LSG + F +YL + K+      L +   +    LP++L+E     L
Sbjct: 63  RVENAYKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +          ++ I  R+ A+L +LY CGLR++E +SLT + +   Q  LR+ GKG K 
Sbjct: 123 L-----AAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKE 177

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y        L       LF   RG  +    F   I+      G+
Sbjct: 178 RLVPMGEESIVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ +
Sbjct: 238 GKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHV----ARARLQEMHAR 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|163792312|ref|ZP_02186289.1| Integrase [alpha proteobacterium BAL199]
 gi|159182017|gb|EDP66526.1| Integrase [alpha proteobacterium BAL199]
          Length = 323

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 119/312 (38%), Positives = 183/312 (58%), Gaps = 9/312 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
            V   L     +W + L+ E+ +S  TL +Y  D   F+ FLA +  + + +  +  L  
Sbjct: 17  PVDAGLAGAIADWREWLKSEKRVSPHTLAAYGRDLGGFVNFLAGHLGDTVNLSALGTLQP 76

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            + RA++++R    +   S  R+LS I+ F ++L++R + + + +  +R  +   S+P+A
Sbjct: 77  ADFRAWLARRAGGGLEKSSTARALSTIRGFFRFLERRGLASNAAVGVVRGPRVPRSIPKA 136

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L   +A   +++V   T  +  WI AR+SA+L LLYGCGLR+ EAL L  + +     TL
Sbjct: 137 LTVDEARDALESVGELT--DEPWIAARDSAVLTLLYGCGLRVGEALDLNRRVVPLSD-TL 193

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            I GKG K R+VP+LP VR+A+ +Y + CP+ L      PLF G+RG  L     Q+ I+
Sbjct: 194 TITGKGGKARMVPVLPVVRRAVADYLERCPYRL--GPDDPLFVGVRGGRLGARRVQQSIQ 251

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            LR +LGLP + T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ YT V++     
Sbjct: 252 TLRCWLGLPETATPHALRHSFATHLLAGGGDLRAIQELLGHASLSTTQRYTEVDAAR--- 308

Query: 309 WMMEIYDQTHPS 320
            +++++   HP 
Sbjct: 309 -LLDVHRSAHPR 319


>gi|194333561|ref|YP_002015421.1| tyrosine recombinase XerD [Prosthecochloris aestuarii DSM 271]
 gi|194311379|gb|ACF45774.1| tyrosine recombinase XerD [Prosthecochloris aestuarii DSM 271]
          Length = 304

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 96/312 (30%), Positives = 148/312 (47%), Gaps = 13/312 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           + F  +    ++L  L +ER  S  T QSY  D  ++L+++          + +  +   
Sbjct: 4   LEFPYIDHLDSFLNYLTLERNFSVNTRQSYTNDLSRYLLYMQQQQ------KAVESIKLD 57

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +IR FI       +  RS+ R++S I+S  K+L   KI   +   N+R  K   +LP+ L
Sbjct: 58  DIREFIHTLSATGMEARSIARNISAIRSLHKFLVAEKIVQVNETNNLRQPKPLKALPKVL 117

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              +A  L+D  L      +     R+ AIL  LY  G+R+SE + +   N   D+  +R
Sbjct: 118 THDEAFKLLDAPL--AKDSSSRYALRDKAILEFLYATGVRVSELVDVCQNNCFLDEGFIR 175

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           I GKG K R+VP+  S    I  Y D L     N      LF   RG  L        + 
Sbjct: 176 IFGKGSKERLVPIGSSAVSWIKRYLDELRMRIANDRSADFLFLNARGGRLTRMTVYNIVT 235

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                 G+  + + HTLRH+FATHLL  G DLR++Q +LGH  +  TQIYT+++      
Sbjct: 236 HYSLIAGISKTISPHTLRHTFATHLLEGGADLRAVQEMLGHSSILATQIYTHID----RS 291

Query: 309 WMMEIYDQTHPS 320
           ++ E++   HP 
Sbjct: 292 FLCEVHKSFHPR 303


>gi|315268949|gb|ADT95802.1| tyrosine recombinase XerD [Shewanella baltica OS678]
          Length = 300

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 99/301 (32%), Positives = 151/301 (50%), Gaps = 16/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L   +GLS  TL +Y  D R F  + A          T+  +S  ++RA+++ R  
Sbjct: 14  FLDDLWSNKGLSDNTLSAYRTDLRHFDRYQAQQG------VTLLSVSQADVRAYLAFRVE 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     S  R LS ++ F  YL + K  +   +  + + K +  LP +L+E Q   L+  
Sbjct: 68  QDFARTSSARLLSSLRRFYTYLVQTKQISADPMALVESPKLTRHLPDSLSESQVDRLLSE 127

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                 +    ++ R+ A+L LLY  GLR+SE + LT + +   Q  +RI GKG K R+V
Sbjct: 128 -----PNVEDAVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLV 182

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           PL       +  Y      +L  N Q   +F   RG+ +    F   I+      G+  +
Sbjct: 183 PLGELAITEVESYMKFARQELLGNKQSDVVFPSKRGQMMTRQTFWHRIKLYALRAGIETA 242

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ Q HP
Sbjct: 243 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHV----ARARLQELHQQHHP 298

Query: 320 S 320
            
Sbjct: 299 R 299


>gi|117923766|ref|YP_864383.1| tyrosine recombinase XerC subunit [Magnetococcus sp. MC-1]
 gi|117607522|gb|ABK42977.1| tyrosine recombinase XerC subunit [Magnetococcus sp. MC-1]
          Length = 335

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 104/322 (32%), Positives = 161/322 (50%), Gaps = 16/322 (4%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   Q +  +L  ER LS  T + Y  D   F  F A Y  E +T   + QL    I AF
Sbjct: 3   LPYLQRFFDHLMQERRLSVHTEKGYRRDLEAFSAFYAEYEGEPLTPTKLAQLDGDHILAF 62

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + +   + +   +++R ++ ++++  Y+++  + + +    + + K    LPRA + +Q 
Sbjct: 63  LGRGHREGLARTTMQRRMAALRAWFNYMQREGLVSGNPAAAVSSPKAPKRLPRAPSVEQT 122

Query: 135 LTLVD----------NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           L L+D               TS        R++A+L LLY  GLRISEA +L   ++   
Sbjct: 123 LNLLDKSTPRPLSPEASDFDTSAWAVLRSLRDTALLELLYSAGLRISEACNLDRADVDLR 182

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGV 242
              LR++ GKG K R+VPL  +   AI  +          L+   P+F G  GK LN   
Sbjct: 183 GGELRVRHGKGGKQRMVPLGRTAVAAIEAWLQARTRAKPQLDPMGPIFTGQLGKRLNSRE 242

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            QR + + R  L LP S T H LRH+FATHLL  G DLR+IQ ++GH  LS TQ YT+++
Sbjct: 243 GQRLLEKWRARLDLPESVTPHALRHAFATHLLQAGADLRAIQEMMGHASLSATQKYTHLD 302

Query: 303 SKNGGDWMMEIYDQTHPSITQK 324
            +     + ++YD  HP   ++
Sbjct: 303 MQ----ALAKVYDAAHPRAQRR 320


>gi|311278186|ref|YP_003940417.1| tyrosine recombinase XerD [Enterobacter cloacae SCF1]
 gi|308747381|gb|ADO47133.1| tyrosine recombinase XerD [Enterobacter cloacae SCF1]
          Length = 298

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 89/309 (28%), Positives = 150/309 (48%), Gaps = 17/309 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L + + +L  L +E+ L++ TL +Y  D      +L           ++      +++  
Sbjct: 5   LAQIEQFLDALWLEKNLAENTLSAYRRDLTMVAAWLQHRG------LSLETAQPGDLQNL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R        S  R LS ++   ++L + KI  +     + + K    LP+ L+E Q 
Sbjct: 59  LAERVDGGYKATSSARLLSAMRRLFQHLYREKIRPDDPSAQLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+   L+        ++ R+ A+L +LY  GLR+SE + L+  +I   Q  +R+ GKG
Sbjct: 119 DRLLQAPLVDQP-----LELRDKAMLEVLYATGLRVSELVGLSMSDISLRQGVVRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y     P+ LN      LF   R + +    F   I+   R 
Sbjct: 174 NKERLVPLGEEAVYWLENYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYARL 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHPSI 321
           ++ Q HP  
Sbjct: 290 LHQQHHPRA 298


>gi|308069572|ref|YP_003871177.1| Tyrosine recombinase xerD [Paenibacillus polymyxa E681]
 gi|305858851|gb|ADM70639.1| Tyrosine recombinase xerD [Paenibacillus polymyxa E681]
          Length = 317

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 93/316 (29%), Positives = 156/316 (49%), Gaps = 23/316 (7%)

Query: 13  ELLK-ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           EL+K   Q ++Q +E E+GLS+ TL++Y+ D +QF  F      E   I+    +  + +
Sbjct: 2   ELMKMYIQPFVQYMEEEKGLSRSTLEAYQRDVQQFAEFA-----ESCGIEQPDNVQRSHL 56

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
             ++ + + Q     ++ RS++ I+SF  +L +  IT     + +   K +   P  L +
Sbjct: 57  VLYLGRLKEQGKAAATISRSVASIRSFFHFLIREGITIHDPSVLLELPKATKKKPSVLTQ 116

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            +   L+D         T     R+ A+L LLY  G+R+SE ++L  +++  D   +   
Sbjct: 117 DEIERLLD-----APDVTAPQGVRDKAMLELLYATGIRVSELIALNVRDVRTDLRFVHCG 171

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN--------IQLPLFRGIRGKPLNPGVF 243
           G+  K R+VP+     +    Y D     L  +         Q  +F  + G+ L+   F
Sbjct: 172 GEAGKERVVPISREASQWAQAYMDEQRLLLLKSGQGEEAQVEQEAMFLNVSGQRLSRQGF 231

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            + I++  +  G+    T HTLRHSFA H+L  G DLRS+Q +LGH  LSTTQ+Y     
Sbjct: 232 WKMIKKYGQEAGISEDITPHTLRHSFAVHMLEGGADLRSVQEMLGHADLSTTQVYAQTAR 291

Query: 304 KNGGDWMMEIYDQTHP 319
           +N    M E+Y++ HP
Sbjct: 292 RN----MKEVYEKHHP 303


>gi|190150873|ref|YP_001969398.1| tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|307264224|ref|ZP_07545815.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
 gi|189916004|gb|ACE62256.1| tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|306870470|gb|EFN02223.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
          Length = 297

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 96/309 (31%), Positives = 152/309 (49%), Gaps = 18/309 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L    + +L  L  E GLS+ T  +Y  D   F  +L        T +    L + +++A
Sbjct: 4   LDPIIEQFLDTLWQEHGLSENTSAAYRLDLESFSEWL-------PTPKAFLTLDHFDLQA 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+  R        S  R LS ++ F ++L       +   L + + +K   LP++L+E+Q
Sbjct: 57  FLGGRLELGYKATSSARMLSCLRKFFRFLYTENYRQDDPTLTLTSPRKPAHLPKSLSEEQ 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
            + L+D     + +    I+ R+ A+L LLY  GLR+SE +SL+  N+   Q  +R+ GK
Sbjct: 117 VMDLLD-----SPNTLDPIELRDKAMLELLYATGLRVSELVSLSIDNLSLRQGVVRVVGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           GDK R+VP+       I E++       LN      +F   RG+ +    F   I+    
Sbjct: 172 GDKERLVPIGEEAGYWIQEFFQYGRAILLNNLQSDVVFPSRRGQQMTRQTFWHRIKHYAV 231

Query: 253 YLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             G+     + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V        + 
Sbjct: 232 LAGIDSEKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR----LK 287

Query: 312 EIYDQTHPS 320
            ++ Q HP 
Sbjct: 288 SLHQQFHPR 296


>gi|91774554|ref|YP_544310.1| tyrosine recombinase XerC subunit [Methylobacillus flagellatus KT]
 gi|91708541|gb|ABE48469.1| tyrosine recombinase XerC subunit [Methylobacillus flagellatus KT]
          Length = 291

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 97/310 (31%), Positives = 160/310 (51%), Gaps = 19/310 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +   Q +L+ L+ ERGLS LT++ Y  D             +  +   +  L  + IR F
Sbjct: 1   MDVLQRYLEYLQFERGLSLLTVKHYRRDLELLF--------DLKSGMALDALQPSHIRRF 52

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I+    + +  +++ R LSG + F  YL KR   T +   +MR  K   SLP+AL   QA
Sbjct: 53  IATLHGRGLSGKTIARHLSGWRGFFDYLVKRHGATCNPCHDMRAPKSPKSLPKALAIDQA 112

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           + LVD            +  R+ AIL L Y  GLR+SE   L   ++   + T+++ GKG
Sbjct: 113 VQLVDM------KGEDVLSIRDKAILELFYSSGLRLSEVTGLNIGDLNLHEGTVKVLGKG 166

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K RIVP+     +A+ ++  +    ++ + Q  +F    G+ ++    Q  I+Q     
Sbjct: 167 SKSRIVPIGRHAIQAMQDWLAVRQPAISSDEQ-AVFLNRNGRRISGRAIQYRIKQWAIRR 225

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+  +   H LRHSFA+H+L + GDLR++Q +LGH  +STTQ+YT+++ ++    + ++Y
Sbjct: 226 GISSNVHPHMLRHSFASHVLQSSGDLRAVQEMLGHANISTTQVYTHLDFQH----LAKVY 281

Query: 315 DQTHPSITQK 324
           D  HP   +K
Sbjct: 282 DAAHPRARKK 291


>gi|269140272|ref|YP_003296973.1| site-specific tyrosine recombinase [Edwardsiella tarda EIB202]
 gi|267985933|gb|ACY85762.1| site-specific tyrosine recombinase [Edwardsiella tarda EIB202]
 gi|304560099|gb|ADM42763.1| Site-specific recombinase XerD [Edwardsiella tarda FL6-60]
          Length = 299

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 93/306 (30%), Positives = 154/306 (50%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L +E+ L++ TL SY  D R    +LA++        T+   ++ +++ F ++
Sbjct: 9   IEQFLDALWLEKNLAENTLASYRQDLRTLAEWLAYHD------LTLLTAAHGDLQDFFAQ 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++   +YL + K+ ++     + + K    LP+ L+E Q   L
Sbjct: 63  RMDGGYKASSSARLLSALRRCYQYLYREKLRSDDPSALLASPKLPQRLPKDLSEAQVDAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +    + T      ++ R+ A+L LLY  GLR+SE + L  ++I   Q  +R+ GKG+K 
Sbjct: 123 LQAPAIDTP-----LELRDKAMLELLYATGLRVSELVGLAQEDISLRQGVVRVIGKGNKE 177

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       I  Y     P+ +N      LF   R + +    F   I+      G+
Sbjct: 178 RLVPLGEEAIYWIEYYLEYGRPWLVNGQTVAALFPSNRARQMTRQTFWHRIKHYAVLAGI 237

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 238 DAERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 293

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 294 QHHPRA 299


>gi|262273209|ref|ZP_06051025.1| tyrosine recombinase XerC [Grimontia hollisae CIP 101886]
 gi|262222787|gb|EEY74096.1| tyrosine recombinase XerC [Grimontia hollisae CIP 101886]
          Length = 305

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 79/318 (24%), Positives = 153/318 (48%), Gaps = 16/318 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +   + K    +   +  ERGLS+ T  +Y         FL         +   + +   
Sbjct: 3   LPASIEKPLARFFDYMIRERGLSRHTETNYRQQLAACAEFLV-----GAGVSQWQDVDAA 57

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R   ++ + +++   S+   LS ++SF  ++    +   +    +   K+  +LP+ L
Sbjct: 58  WVRQIAAQAKREQLKAGSIALRLSALRSFFDFMVADGVMAANPAKGVSAPKQGRTLPKNL 117

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  +   L+      +      +  R+ A++ L+YG GLR+SE + L  +++   +  LR
Sbjct: 118 DVDEVNQLL------SVDADDPLSVRDRAMMELMYGAGLRLSELIGLNVRDVAMRKGDLR 171

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKGDK RIVP     ++ ++ +  +    L    +  LF    GK ++P   Q+ + +
Sbjct: 172 VIGKGDKERIVPFTGMAKEWLINWLKVRNQLLK-GPEDALFLSKLGKRISPRSVQKRMAE 230

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +   +      H LRHSFATH+L + GDLR++Q +LGH  LSTTQ+YT+++ ++    
Sbjct: 231 WGQKQAVSSHINPHKLRHSFATHMLESSGDLRAVQELLGHADLSTTQVYTHLDFQH---- 286

Query: 310 MMEIYDQTHPSITQKDKK 327
           + ++YD  HP   ++ + 
Sbjct: 287 LAKVYDAAHPRARKRKRD 304


>gi|254492686|ref|ZP_05105857.1| tyrosine recombinase XerD [Methylophaga thiooxidans DMS010]
 gi|224462207|gb|EEF78485.1| tyrosine recombinase XerD [Methylophaga thiooxydans DMS010]
          Length = 303

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 98/321 (30%), Positives = 157/321 (48%), Gaps = 20/321 (6%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M   + P   S    +  Q +L +L +E GLS+ T+++Y  D   F  +LA         
Sbjct: 1   MSEQDEPTSTS----RYLQPFLDSLWLEAGLSQNTVEAYRRDLLAFAAWLAKLD------ 50

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             +   +  +I+ + S+R  +    RS  R LS ++ F +YL +  I        + + +
Sbjct: 51  VDLAAATQHDIQRYQSQRMREGRKVRSEARLLSTLRRFYRYLLREDIRDSDPTAQLESPR 110

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LP +L E+    L+          T  +  R+  +L LLY  GLR+SE + L  + 
Sbjct: 111 LGKPLPDSLTEQDVEDLL-----AQPDITDLLGLRDRTMLELLYASGLRVSELVGLKQEQ 165

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLN 239
           I   Q  +R  GKG+K R+VPL       + +Y Y+  P  LN  +   +F   RGK + 
Sbjct: 166 INMRQGLVRCIGKGNKERLVPLGEVALDWLQQYFYESRPGLLNGKVTDDVFPTRRGKAMT 225

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
              F   I++  +   +  + + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT
Sbjct: 226 RQAFWYIIKRYAKQAQIQKTLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYT 285

Query: 300 NVNSKNGGDWMMEIYDQTHPS 320
           +V  +     + +++ Q HP 
Sbjct: 286 HVAKER----LKQLHGQHHPR 302


>gi|254229667|ref|ZP_04923077.1| tyrosine recombinase XerD [Vibrio sp. Ex25]
 gi|262395210|ref|YP_003287064.1| site-specific recombinase XerD [Vibrio sp. Ex25]
 gi|151937788|gb|EDN56636.1| tyrosine recombinase XerD [Vibrio sp. Ex25]
 gi|262338804|gb|ACY52599.1| site-specific recombinase XerD [Vibrio sp. Ex25]
          Length = 305

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 91/306 (29%), Positives = 149/306 (48%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + +ERGLS+ TL SY  D  + L ++  +         +  +S + ++ + S 
Sbjct: 15  VEQFLDAMWMERGLSENTLASYRNDLMKLLTWMEKHRYR------LDFISLSGLQEYQSY 68

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    S  R LS I+   +YL + K+  +     + + K    LP+ ++E+Q   L
Sbjct: 69  LVDLDYKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQVDAL 128

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++            ++ R+ A+L LLY  GLR++E +SLT +NI   Q  +R+ GKG K 
Sbjct: 129 LE-----APDPNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKE 183

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +    I  +     P  L       +F   R + +    F   I+      G+
Sbjct: 184 RLVPMGENAVDWIETFIQQGRPALLGDTSSDIVFPSKRARQMTRQTFWHRIKYYALIAGI 243

Query: 257 PLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +I+ 
Sbjct: 244 DTEQLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIHS 299

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 300 QHHPRA 305


>gi|322515725|ref|ZP_08068691.1| tyrosine recombinase XerD [Actinobacillus ureae ATCC 25976]
 gi|322118197|gb|EFX90503.1| tyrosine recombinase XerD [Actinobacillus ureae ATCC 25976]
          Length = 297

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 96/309 (31%), Positives = 154/309 (49%), Gaps = 18/309 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L    + +L  L  E GLS+ T  SY  D  +F  +L        T +    L + ++++
Sbjct: 4   LDPIIEQFLDTLWQEHGLSENTSASYRLDLERFSEWL-------PTPKAFLTLDHFDLQS 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+ +R  Q     S  R LS ++ F ++L       +   L + + +K  +LP++L+E+Q
Sbjct: 57  FLGERLEQGYKATSSARMLSCLRKFFRFLYIENYRQDDPTLTLISPRKPTNLPKSLSEEQ 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
            + L+D       +    ++ R+ A+L LLY  GLR++E +SLT  N+   Q  +RI GK
Sbjct: 117 VMDLLDC-----PNTLDPVELRDKAMLELLYATGLRVTELVSLTTDNLNLRQGVMRIVGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G+K R+VP+       I E++       LN      +F   RG  +    F   I+    
Sbjct: 172 GNKERLVPIGEEASYWIQEFFQYGRAILLNNIQSDVVFPSRRGLQMTRQTFWHRIKHYAV 231

Query: 253 YLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             G+     + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V        + 
Sbjct: 232 LAGIDSEKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR----LK 287

Query: 312 EIYDQTHPS 320
            ++ Q HP 
Sbjct: 288 SLHQQFHPR 296


>gi|37527425|ref|NP_930769.1| site-specific tyrosine recombinase XerD [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36786860|emb|CAE15925.1| Integrase/recombinase xerD [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 303

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 150/305 (49%), Gaps = 17/305 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + +E  L++ TL SY  D +    +L  +    +++QTI      ++ +F+++
Sbjct: 13  IEQFLDAIWLEHDLAENTLASYRLDLQALDNWLIHHGHNLLSVQTI------DLHSFLAE 66

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++    Y  + K+  +     +   K    LP+ L+EKQ   L
Sbjct: 67  RVDGGYKASSSARLLSAMRQLFLYFYREKMREDDPTALLSAPKLPKRLPKDLSEKQVEDL 126

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +     +     + ++ R+ A+L +LY CGLR+SE + LT  ++   Q  +R+ GKG+K 
Sbjct: 127 L-----NAPCTDQPVELRDKAMLEVLYACGLRVSELVGLTLSDVSLRQGVVRVIGKGNKE 181

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       +  Y        LN      LF   RG+ +    F   I+      G+
Sbjct: 182 RLVPLGEEAIYWLENYLEYGRVGLLNGATLDVLFPSNRGRQMTRQTFWYRIKHYALLAGI 241

Query: 257 PL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  ++ 
Sbjct: 242 DTGRLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKLLHQ 297

Query: 316 QTHPS 320
           Q HP 
Sbjct: 298 QHHPR 302


>gi|220935295|ref|YP_002514194.1| tyrosine recombinase XerD [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996605|gb|ACL73207.1| tyrosine recombinase XerD [Thioalkalivibrio sp. HL-EbGR7]
          Length = 308

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 87/306 (28%), Positives = 132/306 (43%), Gaps = 17/306 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
               +L  +  E GLS  TL +Y  D      +L    +       + Q    ++ A++S
Sbjct: 17  AIDAFLDAIWAEHGLSDHTLAAYRADLMALARWLGPRGKR------VEQADRGDLLAYLS 70

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            R       RS  R LS ++ F ++  +     +     + + K    LP  L+E     
Sbjct: 71  HRVAGGARPRSTARLLSSLRRFYRHQVRDGRRQDDPTAQIDSPKLGRPLPDTLSETDVEA 130

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+      +      +  R+ A+L LLY  GLR+SE + L    +      +R  GKG K
Sbjct: 131 LL-----ASPDTDTDLGLRDRAMLELLYATGLRVSELVGLRVDQVNLRHGVVRTLGKGSK 185

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            R+VPL       +  Y       L         LF   RG  +    F   +R+     
Sbjct: 186 ERLVPLGEEASVWVERYLGAARPALLAGQGACDDLFVTRRGGAMTRQAFWHLLRRYAAQA 245

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++
Sbjct: 246 GIHKHLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHV----ARARLKELH 301

Query: 315 DQTHPS 320
            + HP 
Sbjct: 302 GKHHPR 307


>gi|162447539|ref|YP_001620671.1| site-specific tyrosine recombinase [Acholeplasma laidlawii PG-8A]
 gi|161985646|gb|ABX81295.1| site-specific tyrosine recombinase [Acholeplasma laidlawii PG-8A]
          Length = 301

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 98/310 (31%), Positives = 165/310 (53%), Gaps = 14/310 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++   L  E GLSK T+ +Y  D + +  FL  Y +    ++ +  +    I  ++  
Sbjct: 5   IKDFSYYLNNELGLSKNTIDAYMRDLKDYESFLDKYHK----LKDVDNIQSKHIEGYLKS 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            + + +  +++ R L+ IKSF K+L   K   E     +   K   +LP  L+  + +++
Sbjct: 61  IKKKGLSAKTISRKLTSIKSFHKFLLMEKEVDEDVTHKIARPKIEKTLPTVLSVDEVISI 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++ +      ++  +  RN A+L L+YG GLR+SE L++  ++I   QS + + GKG K 
Sbjct: 121 LEVI-----DKSTTLGLRNMALLELIYGSGLRVSELLNIKLKDIHMQQSYVIVTGKGSKE 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL- 256
           R+VP+      AI  Y      DL       LF   +GK L+   F + +++L     L 
Sbjct: 176 RMVPISDMAIIAIRNYLVKARDDLIKEKTDYLFINNQGKTLSRVGFFKVLKKLASEANLD 235

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           P   + HTLRHSFATHLL NG DLRS+Q++LGH  +STTQIYT+++       + ++Y++
Sbjct: 236 PEKVSPHTLRHSFATHLLENGMDLRSLQNLLGHEDISTTQIYTHISQSR----LKQVYNK 291

Query: 317 THPSITQKDK 326
           THP   + +K
Sbjct: 292 THPRAKENNK 301


>gi|225351391|ref|ZP_03742414.1| hypothetical protein BIFPSEUDO_02985 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157735|gb|EEG71018.1| hypothetical protein BIFPSEUDO_02985 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 317

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 87/324 (26%), Positives = 151/324 (46%), Gaps = 23/324 (7%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +  +  + +L ++++ERGLSK T+ +Y  D +++  +LA        +  I  ++  ++ 
Sbjct: 3   DFERTIRQFLAHIDVERGLSKATVSAYGADLKKYRQWLA-----DQGVGGIAAVTTQDVE 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            +I          RS  R L+ I +  ++     I  +     ++  K  ++LP  L   
Sbjct: 58  RYIVFLDESGESSRSKARRLASIHALHRFAVNEHIVVDDVSAQVKAPKGVSTLPDVLTVD 117

Query: 133 QALTLVDNVLLHTSHE---------TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           +   L+D++ +  + E            +  R+ A+L  +Y  G R+SEA      ++  
Sbjct: 118 EVARLLDSIPVSQNREHDGVVSEFPDDPVMLRDKALLEFMYAIGARVSEACGANLDDVDV 177

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPL 238
           D    R+ GKG K R+VP+     +AI+ Y       L    + P     LF   RGK L
Sbjct: 178 DGRIARLMGKGSKQRLVPVGSYACEAIIRYLHAGRPKLESKSKGPVERRALFLNKRGKRL 237

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +       IR       +      HTLRHSFATHL+  G D+R++Q +LGH  ++TTQIY
Sbjct: 238 SRQSVWEIIRGAGERAHIDKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIY 297

Query: 299 TNVNSKNGGDWMMEIYDQTHPSIT 322
           T+++ +N    ++E Y  +HP   
Sbjct: 298 THISPEN----LIETYLMSHPRAR 317


>gi|304410563|ref|ZP_07392181.1| tyrosine recombinase XerD [Shewanella baltica OS183]
 gi|307304656|ref|ZP_07584406.1| tyrosine recombinase XerD [Shewanella baltica BA175]
 gi|304351047|gb|EFM15447.1| tyrosine recombinase XerD [Shewanella baltica OS183]
 gi|306912058|gb|EFN42482.1| tyrosine recombinase XerD [Shewanella baltica BA175]
          Length = 300

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 99/301 (32%), Positives = 151/301 (50%), Gaps = 16/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L   +GLS  TL +Y  D R F  + A          T+  +S  ++RA+++ R  
Sbjct: 14  FLDDLWSSKGLSDNTLSAYRTDLRHFDRYQAQQG------VTLLAVSQADVRAYLAFRVE 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     S  R LS ++ F  YL + K  +   +  + + K +  LP +L+E Q   L+  
Sbjct: 68  QDFARTSSARLLSSLRRFYTYLVQTKQISADPMALVESPKLTRHLPDSLSESQVDRLLSE 127

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                 +    ++ R+ A+L LLY  GLR+SE + LT + +   Q  +RI GKG K R+V
Sbjct: 128 -----PNVEDAVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLV 182

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           PL       +  Y      +L  N Q   +F   RG+ +    F   I+      G+  +
Sbjct: 183 PLGELAITEVESYMKFARQELLGNKQSDVVFPSKRGQMMTRQTFWHRIKLYALRAGIETA 242

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ Q HP
Sbjct: 243 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHV----ARARLQELHQQHHP 298

Query: 320 S 320
            
Sbjct: 299 R 299


>gi|78046247|ref|YP_362422.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325925416|ref|ZP_08186815.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118]
 gi|325928769|ref|ZP_08189938.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118]
 gi|78034677|emb|CAJ22322.1| Site-specific recombinase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325540850|gb|EGD12423.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118]
 gi|325544176|gb|EGD15560.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118]
          Length = 305

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 88/316 (27%), Positives = 153/316 (48%), Gaps = 19/316 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT-----EEKITIQTIRQLSYT 69
           +     +L  L++ER +S  TL +Y  D    +++ A        ++        QL   
Sbjct: 1   MSSVDEFLTYLQVERQVSAHTLDAYRRDLAALVVWAAEQATEAGVQDAAVPGETAQLDSA 60

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R F++    + +  +SL+R LS  +S+  +L K    + S    +R  K    LP+ L
Sbjct: 61  HLRQFVAAEHRRGLSAKSLQRRLSACRSYYAWLLKHGRISASPAAALRAPKAPRKLPQVL 120

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  +A+ LV+            +  R+ A+L + Y  GLR+SE  +L  +++  D   + 
Sbjct: 121 DADEAVRLVEVP------TDAPLGLRDRALLEVFYSSGLRLSELCALRWRDLDLDSGLVM 174

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG K R+VP+      A+ E+      D   +    +F G  G  ++    Q  I+Q
Sbjct: 175 VLGKGSKQRLVPVGSHAIAALREWR----RDSGASADSHVFPGRAGGAISQRAVQIRIKQ 230

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           L    G+      H LRHSFA+H+L + GDLR +Q +LGH  ++TTQIYT+++ ++    
Sbjct: 231 LAVRQGMFKDVHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQH---- 286

Query: 310 MMEIYDQTHPSITQKD 325
           + ++YD  HP   +K 
Sbjct: 287 LAKVYDAAHPRARRKK 302


>gi|218701603|ref|YP_002409232.1| site-specific tyrosine recombinase XerD [Escherichia coli IAI39]
 gi|254037938|ref|ZP_04871996.1| site-specific tyrosine recombinase [Escherichia sp. 1_1_43]
 gi|218371589|emb|CAR19428.1| site-specific tyrosine recombinase [Escherichia coli IAI39]
 gi|226839562|gb|EEH71583.1| site-specific tyrosine recombinase [Escherichia sp. 1_1_43]
          Length = 298

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 151/309 (48%), Gaps = 17/309 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L  L +E+ L++ TL +Y  D    + +L           T+  +   +++A 
Sbjct: 5   LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG------LTLATVQSDDLQAL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R        S  R LS ++   +YL + K   +    ++ + K    LP+ L+E Q 
Sbjct: 59  LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+   L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG
Sbjct: 119 ERLLQAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y     P+ LN      LF   R + +    F   I+     
Sbjct: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHPSI 321
           ++ Q HP  
Sbjct: 290 LHQQHHPRA 298


>gi|74318396|ref|YP_316136.1| tyrosine recombinase XerD [Thiobacillus denitrificans ATCC 25259]
 gi|74057891|gb|AAZ98331.1| tyrosine recombinase XerD [Thiobacillus denitrificans ATCC 25259]
          Length = 296

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 92/304 (30%), Positives = 149/304 (49%), Gaps = 15/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +  +L +E GL++LTL +Y  D R F  +L     +K   +++  ++  ++ A++  
Sbjct: 6   IDRFCDHLWLEDGLAELTLAAYRRDLRSFAGWL-----DKTRARSLDAVAPGDVEAYLGW 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R    +G RS  R  S +K F +YL +  +      LN+   K   +LP +L+E     L
Sbjct: 61  RFAHHVGPRSAARYTSALKRFYRYLLRENLIAADPTLNLDRPKLPRALPASLSETDVERL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++      +        R+ A+L  LY  GLR+SE + L    +  D   LR+ GKG+K 
Sbjct: 121 LER-----ADSDTPQGLRDRAMLETLYATGLRVSELVGLKLNALNLDDGVLRVTGKGNKD 175

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL     + +  Y  +     L   +   +F   RG  +    F   I++     G+
Sbjct: 176 RLVPLGEEAVRRLRHYLAEARSQLLRRQVSDAVFVTPRGAAMTRQAFWYLIKRRAAAAGV 235

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     M  ++  
Sbjct: 236 TRQLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARER----MKRLHAA 291

Query: 317 THPS 320
            HP 
Sbjct: 292 HHPR 295


>gi|114048718|ref|YP_739268.1| tyrosine recombinase XerD [Shewanella sp. MR-7]
 gi|113890160|gb|ABI44211.1| tyrosine recombinase XerD [Shewanella sp. MR-7]
          Length = 300

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 98/304 (32%), Positives = 148/304 (48%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L +L   +GLS  TL +Y  D R F  +        I      ++   ++RA+++ 
Sbjct: 11  IDAFLDDLWSSKGLSDNTLSAYRTDLRHFDRYQQSQGLRLI------EVGQADVRAYLAY 64

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  Q+    S  R LS ++ F  YL + K      +  + + K S  LP +L+E Q   L
Sbjct: 65  RVQQQFARTSSARLLSSLRRFYTYLLQTKQIAGDPMALIESPKLSRQLPDSLSESQVDRL 124

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L   +    ++ R+ A+L LLY  GLR+SE + LT + +   Q  +RI GKG K 
Sbjct: 125 -----LAEPNVDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKE 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y      +L  NIQ   +F   R + +    F   I+      G+
Sbjct: 180 RLVPMGELAITEVERYLSFARHELLGNIQSDVVFPSKRSQMMTRQTFWHRIKLYASRAGI 239

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ Q
Sbjct: 240 ETELSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHV----ARARLQELHQQ 295

Query: 317 THPS 320
            HP 
Sbjct: 296 HHPR 299


>gi|330827985|ref|YP_004390937.1| Tyrosine recombinase XerC [Aeromonas veronii B565]
 gi|328803121|gb|AEB48320.1| Tyrosine recombinase XerC [Aeromonas veronii B565]
          Length = 325

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 80/315 (25%), Positives = 151/315 (47%), Gaps = 15/315 (4%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
            +   L  E   +++ L +ER LS  T  +Y+         L       + +    +L  
Sbjct: 18  PLPAALADELAAFIEYLRVERQLSPHTRNNYQAHLEAMTAELVA-----LGLTDWGRLEA 72

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           +++R  +++     +  RSL   +S ++SF  +  ++   T +    +   K+   LP+ 
Sbjct: 73  SQVRTLVTRMHKAGLAPRSLSTKVSALRSFCDWQVRQGRLTANPARGIVTPKQGRPLPKN 132

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+  +      + LL+ + E   +  R+ AI+ L+Y  GLR++E + +   ++  D   L
Sbjct: 133 LDVDEM-----HQLLNITDEQDPLAVRDRAIMELMYSSGLRLAELVGINLVDLKLDDRQL 187

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           ++ GKG + R++P+     + + ++  + P  L  +    LF   R + L+    Q  + 
Sbjct: 188 KVTGKGSRERVLPIGRMAVEWLQKWLKVRPL-LAGDESEALFVSSRKQRLSARSVQARLD 246

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                  L      H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++   
Sbjct: 247 GWGNKQALNAHVHPHKLRHSFATHMLESSGDLRAVQELLGHADLSTTQIYTHLDFQH--- 303

Query: 309 WMMEIYDQTHPSITQ 323
            + ++YD  HP   +
Sbjct: 304 -LAKVYDSAHPRAKR 317


>gi|294678724|ref|YP_003579339.1| tyrosine recombinase XerC [Rhodobacter capsulatus SB 1003]
 gi|294477544|gb|ADE86932.1| tyrosine recombinase XerC [Rhodobacter capsulatus SB 1003]
          Length = 307

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 122/301 (40%), Positives = 187/301 (62%), Gaps = 9/301 (2%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W+ +L    G +  TL +Y  D   FL FL  +  E + +  +  L  +++RA+++  R 
Sbjct: 16  WISHLRAIDGAASHTLTAYSSDVAGFLAFLHRHRGESLGLAQLAGLGQSDMRAWMAHERN 75

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  RSL R+LS +K+F+++L  R+    +++L+ +  K    LPR L+ + A  +++ 
Sbjct: 76  RGLSGRSLARALSAVKNFIRWLAAREGFDATHVLSAKAPKYQRKLPRPLSVEAAAEVLEQ 135

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           V +    +  WI AR+SA++ L+YGCGLR+SEAL+L   +    +  LRI+GKGDK R+V
Sbjct: 136 VEVQA--QEPWIAARDSAVMTLMYGCGLRVSEALALKGSDAPLPE-VLRIRGKGDKERLV 192

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+LP+ RKA+ +Y  LCPF ++     PLFRG RG PLNP +  + + + R  LGLP + 
Sbjct: 193 PVLPAARKAVADYLRLCPFPMSR--YEPLFRGARGGPLNPRLVAKSMERARLGLGLPATA 250

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           T H LRHSFATHLL+ GGDLR+IQ +LGH  L+TTQ+YT V+       +M++Y   HP 
Sbjct: 251 TPHALRHSFATHLLAEGGDLRAIQELLGHASLATTQVYTAVDQAR----LMQVYQAAHPR 306

Query: 321 I 321
            
Sbjct: 307 A 307


>gi|269103442|ref|ZP_06156139.1| site-specific recombinase XerD [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163340|gb|EEZ41836.1| site-specific recombinase XerD [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 298

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + +ERGLS+ TL SY  D  + ++++  +         +  +S  +++ +   
Sbjct: 8   IERFLDAMWMERGLSENTLASYRNDLTKLMMWMKEHK------LVLESISADDLQRYQQW 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q     S  R +S I+   +YL + KI  +     + + K    LP+ ++E Q   L
Sbjct: 62  LFDQDYKQTSRARMVSAIRRVFQYLHREKIRVDDPSAMLISPKLPKRLPKDISEAQVDAL 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D       +    I+ R+ A+L LLY  GLR++E +SLT +NI   Q  +R+ GKGDK 
Sbjct: 122 LD-----APNVDDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVVGKGDKE 176

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +    I ++     P  L       +F   R + +    F   I+      G+
Sbjct: 177 RLVPMGENAVDWIEQFLAQGRPMLLGEKSSDVVFPSKRAQQMTRQTFWHRIKHYAVLAGI 236

Query: 257 PLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H +RH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + ++++
Sbjct: 237 DADTLSPHVMRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHE 292

Query: 316 QTHPS 320
           Q HP 
Sbjct: 293 QHHPR 297


>gi|307132969|ref|YP_003884985.1| site-specific tyrosine recombinase [Dickeya dadantii 3937]
 gi|306530498|gb|ADN00429.1| site-specific tyrosine recombinase [Dickeya dadantii 3937]
          Length = 302

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 84/314 (26%), Positives = 148/314 (47%), Gaps = 17/314 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
               L    + +L+ L +ER LS LT  SY    +  +  L+        I   + L   
Sbjct: 3   PDSPLTAPAEAFLRYLRVERQLSPLTQSSYAHQLQVIIDMLSAS-----GIADWQALDAA 57

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +RA +++ +   +   SL + LS ++SFL +L  R     +    +   K    LP+ +
Sbjct: 58  GVRAVVARGKRDGLNAASLAQRLSALRSFLDWLVGRGELKANPARGVPAPKAGRHLPKNM 117

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  +   L+D  L      +  +  R+ A+L ++YG GLR++E + L   ++  D   + 
Sbjct: 118 DVDEMSRLLDIDL------SDPLAVRDRAMLEVMYGAGLRLAELVGLDCGHVDLDSGEVW 171

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG K R +P+  +    +  +  +   D+       +F    GK ++    Q+   +
Sbjct: 172 VMGKGSKERKLPIGATAVTWLRNWLAIR--DIYAPEDDAIFISSLGKRISMRNVQKRFAE 229

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+      H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++    
Sbjct: 230 WGVKQGVNSHVHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH---- 285

Query: 310 MMEIYDQTHPSITQ 323
           +  +YD  HP   +
Sbjct: 286 LASVYDAAHPRARR 299


>gi|297626543|ref|YP_003688306.1| Site-specific recombinase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296922308|emb|CBL56880.1| Site-specific recombinase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 331

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 90/316 (28%), Positives = 150/316 (47%), Gaps = 26/316 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L +L +ERGLS  T+ +Y  D  ++L  L+        I    +++  ++ +F  +
Sbjct: 28  LEDYLDHLGVERGLSPNTVAAYRRDLTRYLRHLSSR-----GIDDPSRITTADVTSFEEE 82

Query: 78  RRT-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
                   + +   S+ R++  ++ F  +  +  +   +    +   +    LP+AL   
Sbjct: 83  LSRGDASHKALAPSSVGRAVVAVRMFHGFAAREGLVDHNVAAALHPPRAGKRLPKALGVD 142

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----MDDQSTL 188
           +   L+D++   T      I  R++A+  +LYG G RISEALSL   ++     D    L
Sbjct: 143 EVARLIDSIERQTP-----IGLRDAALFEVLYGTGARISEALSLDVDDLTRVLADPDGPL 197

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQR 245
           R+ GKG+K R+VPL    R A+  +       L    +     LF   RG  L+      
Sbjct: 198 RVVGKGNKERVVPLGSYARSAVQAWLVRGRPALAERAREFTPALFLNTRGARLSRQSAWE 257

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +R   R  G+      H+LRHSFATHLL  G D+R +Q +LGH  +STTQIYT V ++ 
Sbjct: 258 ALRTRARQAGITADIGPHSLRHSFATHLLDGGADIRVVQELLGHASVSTTQIYTEVTAQQ 317

Query: 306 GGDWMMEIYDQTHPSI 321
               + E+Y  + P  
Sbjct: 318 ----LREVYSSSFPRA 329


>gi|45442956|ref|NP_994495.1| site-specific tyrosine recombinase XerC [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108806177|ref|YP_650093.1| site-specific tyrosine recombinase XerC [Yersinia pestis Antiqua]
 gi|108810287|ref|YP_646054.1| site-specific tyrosine recombinase XerC [Yersinia pestis Nepal516]
 gi|145600710|ref|YP_001164786.1| site-specific tyrosine recombinase XerC [Yersinia pestis Pestoides
           F]
 gi|153948314|ref|YP_001399204.1| site-specific tyrosine recombinase XerC [Yersinia
           pseudotuberculosis IP 31758]
 gi|153997101|ref|ZP_02022234.1| putative integrase/recombinase [Yersinia pestis CA88-4125]
 gi|161484900|ref|NP_667725.2| site-specific tyrosine recombinase XerC [Yersinia pestis KIM 10]
 gi|162418493|ref|YP_001605136.1| site-specific tyrosine recombinase XerC [Yersinia pestis Angola]
 gi|165926246|ref|ZP_02222078.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165939104|ref|ZP_02227655.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011640|ref|ZP_02232538.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166213553|ref|ZP_02239588.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167401874|ref|ZP_02307362.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167420989|ref|ZP_02312742.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167426292|ref|ZP_02318045.1| tyrosine recombinase XerC [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167468815|ref|ZP_02333519.1| site-specific tyrosine recombinase XerC [Yersinia pestis FV-1]
 gi|170026220|ref|YP_001722725.1| site-specific tyrosine recombinase XerC [Yersinia
           pseudotuberculosis YPIII]
 gi|218930846|ref|YP_002348721.1| site-specific tyrosine recombinase XerC [Yersinia pestis CO92]
 gi|229837173|ref|ZP_04457338.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A]
 gi|229839533|ref|ZP_04459692.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229900096|ref|ZP_04515233.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229900458|ref|ZP_04515587.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516]
 gi|270488812|ref|ZP_06205886.1| tyrosine recombinase XerC [Yersinia pestis KIM D27]
 gi|294505507|ref|YP_003569569.1| tyrosine recombinase [Yersinia pestis Z176003]
 gi|34222851|sp|Q8D1K0|XERC_YERPE RecName: Full=Tyrosine recombinase xerC
 gi|45437823|gb|AAS63372.1| putative integrase/recombinase [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108773935|gb|ABG16454.1| tyrosine recombinase XerC subunit [Yersinia pestis Nepal516]
 gi|108778090|gb|ABG12148.1| tyrosine recombinase XerC subunit [Yersinia pestis Antiqua]
 gi|115349457|emb|CAL22430.1| putative integrase/recombinase [Yersinia pestis CO92]
 gi|145212406|gb|ABP41813.1| tyrosine recombinase XerC subunit [Yersinia pestis Pestoides F]
 gi|149289407|gb|EDM39485.1| putative integrase/recombinase [Yersinia pestis CA88-4125]
 gi|152959809|gb|ABS47270.1| tyrosine recombinase XerC [Yersinia pseudotuberculosis IP 31758]
 gi|162351308|gb|ABX85256.1| tyrosine recombinase XerC [Yersinia pestis Angola]
 gi|165912877|gb|EDR31503.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165921770|gb|EDR38967.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165989409|gb|EDR41710.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166205226|gb|EDR49706.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166961118|gb|EDR57139.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167048767|gb|EDR60175.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167054811|gb|EDR64615.1| tyrosine recombinase XerC [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169752754|gb|ACA70272.1| tyrosine recombinase XerC [Yersinia pseudotuberculosis YPIII]
 gi|229682477|gb|EEO78564.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516]
 gi|229686876|gb|EEO78955.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229695899|gb|EEO85946.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229706116|gb|EEO92125.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A]
 gi|262363573|gb|ACY60294.1| tyrosine recombinase [Yersinia pestis D106004]
 gi|262367501|gb|ACY64058.1| tyrosine recombinase [Yersinia pestis D182038]
 gi|270337316|gb|EFA48093.1| tyrosine recombinase XerC [Yersinia pestis KIM D27]
 gi|294355966|gb|ADE66307.1| tyrosine recombinase [Yersinia pestis Z176003]
 gi|320013559|gb|ADV97130.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 303

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 83/313 (26%), Positives = 150/313 (47%), Gaps = 17/313 (5%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           S  L  + + +L+ L IER LS LT+ SY       +        E++ +   + L   +
Sbjct: 5   SASLAPQVEAFLRYLSIERQLSPLTVTSYRRQLSALMEI-----GEQMGLAHWQTLDAAQ 59

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +R+ +S+ +   +   SL   LS ++SFL +L  + +   +    +   +    LP+ ++
Sbjct: 60  VRSLVSRSKRAGLHASSLALRLSALRSFLNWLVSQGVLPANPAKGVSTPRSGRHLPKNID 119

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             +   L+   L         +  R+ A+L ++YG GLR+SE + +  +++      + +
Sbjct: 120 VDEVNKLLSIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGMNCKHVDLASGDVWV 173

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG K R VPL  +    +  +  L   +L       +F    GK ++    Q+   + 
Sbjct: 174 MGKGSKERKVPLGKTAVTWLQHWLALR--ELFEPQDDAIFLANTGKRISARNVQKRFAEW 231

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+      H LRHSFATH+L + GDLR++Q +LGH  L+TTQIYT+++ ++    +
Sbjct: 232 GVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----L 287

Query: 311 MEIYDQTHPSITQ 323
             +YD  HP   +
Sbjct: 288 ATVYDAAHPRAKR 300


>gi|153830013|ref|ZP_01982680.1| tyrosine recombinase XerC [Vibrio cholerae 623-39]
 gi|148874498|gb|EDL72633.1| tyrosine recombinase XerC [Vibrio cholerae 623-39]
          Length = 311

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 81/328 (24%), Positives = 163/328 (49%), Gaps = 17/328 (5%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+ + L   +   L +  + +   L  E+GLS  T ++Y+        +L      ++ +
Sbjct: 1   MKNDEL-TPLPDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLV-----QVGL 54

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
               QL    +R  + + + Q +   S+   LS ++SFL +L  R     +    +   +
Sbjct: 55  THWSQLDSAWVRQLVMQGKRQGMKASSIATRLSSLRSFLDFLILRGELEANPAKGVSAPR 114

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K  +LP+ L+  +   L++        +   +  R+ AI+ L+YG GLR++E +S+  ++
Sbjct: 115 KQRTLPKNLDVDEMAQLLEVT------DDDPLSIRDRAIMELMYGAGLRLAELVSIDVKD 168

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           +   +  +R+ GKG+K R V      ++ + ++  L    L  + +  LF    G  ++ 
Sbjct: 169 VNLSEGEIRVIGKGNKERKVWFAGQAQEWVGKWLKLRS-QLADSAETALFVSKLGTRISH 227

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              Q+ + +  +   +    + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+
Sbjct: 228 RSVQKRMAEWGQKQAVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH 287

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           ++ ++    + ++YDQ HP   +K+K +
Sbjct: 288 LDFQH----LAQVYDQAHPRARKKNKDD 311


>gi|114571348|ref|YP_758028.1| phage integrase family protein [Maricaulis maris MCS10]
 gi|114341810|gb|ABI67090.1| phage integrase family protein [Maricaulis maris MCS10]
          Length = 311

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 130/309 (42%), Positives = 182/309 (58%), Gaps = 9/309 (2%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                +L +L  ER LS  TL +Y+ D   F  FL  +      + T+  LS  + RA++
Sbjct: 12  DALAAFLAHLSGERRLSPRTLDAYQRDLDNFGAFLCEHHGRLPDLMTLGDLSSRDFRAYM 71

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           + RR   +  RSL R+LS I++F  Y K+R     + +  + + K   S P+ ++E  A 
Sbjct: 72  ASRRRDGLSARSLARALSAIRTFFDYAKRRWGVDNAALSLVESPKLLRSAPKPVSESAAK 131

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +L+            W+ AR++A+L LLYGCGLRISEALSLT  + +    TLRI GKG+
Sbjct: 132 SLLAET--GARGGPDWVSARDNAVLLLLYGCGLRISEALSLTGND-LPIGDTLRIAGKGN 188

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RIVP+LP+V +AI +Y  LCPF         LFRG+RG  L+    Q  +++LR  LG
Sbjct: 189 KTRIVPVLPAVAEAISQYVALCPF--ATKDDAALFRGVRGGNLSARSVQALMQELRGRLG 246

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           LP + T H LRH+FATHLL++GGDLR+IQ +LGH  LSTTQIY +V S      ++ IYD
Sbjct: 247 LPETATPHALRHAFATHLLAHGGDLRAIQELLGHASLSTTQIYADVESAR----LLSIYD 302

Query: 316 QTHPSITQK 324
            THP   ++
Sbjct: 303 GTHPRARRR 311


>gi|253700949|ref|YP_003022138.1| tyrosine recombinase XerD [Geobacter sp. M21]
 gi|251775799|gb|ACT18380.1| tyrosine recombinase XerD [Geobacter sp. M21]
          Length = 292

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 93/301 (30%), Positives = 148/301 (49%), Gaps = 18/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +E+G +  T+ +Y  D  ++L+FL     + I           ++  F++K + 
Sbjct: 8   FLNYLLVEKGAAANTVAAYSRDLNRYLLFLGEREPDGIR--------PIDVTGFLAKLKG 59

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + I  RS  R+LS ++   ++L +      +    +   K    LP  L+ ++   L+  
Sbjct: 60  EGIAPRSRARALSALRMLHRFLLREGYCELNPTAIVEAPKGVRKLPAVLSGREVEALL-- 117

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
               + H+T   + R+ A+L LLY  GLR+SE + L    +      L   GKGDK R+V
Sbjct: 118 ---SSPHDTGAQELRDKAMLELLYATGLRVSELVGLKLGEVNLSAGYLMTIGKGDKERLV 174

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+  S  +A   Y      +L      PL F    G  ++   F   I++     G+  S
Sbjct: 175 PIGESACRATGAYLQKARGELLKGKASPLLFLSRLGGGMSRQAFWNIIKKRALQAGVRAS 234

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRHSFATHLL NG DLRS+Q +LGH  LS+TQIYT+V  +     M +++ + HP
Sbjct: 235 ISPHTLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRER----MKKLHAEFHP 290

Query: 320 S 320
            
Sbjct: 291 R 291


>gi|227489005|ref|ZP_03919321.1| site-specific tyrosine recombinase XerD [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091081|gb|EEI26393.1| site-specific tyrosine recombinase XerD [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 360

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 95/310 (30%), Positives = 150/310 (48%), Gaps = 21/310 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  + W+  L +ERG ++ T+ SY  D   +L F        +  +++  ++ T+I AF+
Sbjct: 68  KVARQWITYLTVERGKARNTIASYRRDLASYLDF--------VGERSLDSIAATDIEAFL 119

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                  +   S++R LS I+ F  + +   I  +    ++        LP  L+  +  
Sbjct: 120 QSLGRHGLAVTSVRRMLSTIRGFHAFARDEGIVADDVAHDITPPAMPQHLPDTLSVDEIN 179

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQG 192
           TL+++           +  RN A+L LLYG G RISE LSL   +I    +    L + G
Sbjct: 180 TLIESQ-----AGDSAVALRNKALLELLYGTGARISEVLSLAVDDITALEETDGILVLTG 234

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLR 251
           KGDK RIVP+    R+A+  Y       LN      LF  +RG   ++     + ++Q  
Sbjct: 235 KGDKQRIVPVGSHARQAVDAYLVRGRPQLNKGKSAALFLNVRGGKAMSRQSAWQVVKQAA 294

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+    + HTLRHSFATHLL  G D+RS+Q +LGH  ++TTQIYT++      D + 
Sbjct: 295 TEAGITKDISPHTLRHSFATHLLEGGADVRSVQELLGHASVTTTQIYTHIT----ADSLR 350

Query: 312 EIYDQTHPSI 321
            ++   HP  
Sbjct: 351 AMWRTAHPRA 360


>gi|226313077|ref|YP_002772971.1| tyrosine recombinase [Brevibacillus brevis NBRC 100599]
 gi|226096025|dbj|BAH44467.1| probable tyrosine recombinase [Brevibacillus brevis NBRC 100599]
          Length = 314

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 80/308 (25%), Positives = 142/308 (46%), Gaps = 16/308 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            + + + + L +E+  S  T++ Y  D  +F+ F+  +      I     +SY   R+F+
Sbjct: 9   ADIEMFTRYLRVEKNASPHTVKQYVADISEFVSFMEQHQ-----ITVFAAVSYLHGRSFL 63

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++   + +  RS+ R LS ++S  ++L +     ++    +   K    LP  L  ++  
Sbjct: 64  AQLAGRGLSRRSIARKLSSLRSLYRFLLREGQLEQNPFQLVSTPKMEKKLPSFLYPQEVQ 123

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
              D         T  +  R+  I  LLY  G+R++E  +L+  ++        + GKG 
Sbjct: 124 AFFD-----LPDTTTPLGIRDRLIFELLYASGMRVTELTTLSVSDVNPSMGVALVYGKGA 178

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R VP+       + +Y +     L         L    RG+PL+    +R + +    
Sbjct: 179 KERYVPVGSYACDVLRQYLEHGREKLLAGKVEHGNLLVNYRGEPLSDRSVRRIVDKYVDT 238

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L L  + HT RH+FATH+L+ G DLR++Q +LGH  +STTQ+YT+V  +     +  +
Sbjct: 239 YALQLRVSPHTFRHTFATHMLNGGADLRTVQELLGHVNVSTTQVYTHVTKER----LRHV 294

Query: 314 YDQTHPSI 321
           YD  HP  
Sbjct: 295 YDTAHPRA 302


>gi|119716715|ref|YP_923680.1| tyrosine recombinase XerD [Nocardioides sp. JS614]
 gi|119537376|gb|ABL81993.1| tyrosine recombinase XerD subunit [Nocardioides sp. JS614]
          Length = 318

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 85/328 (25%), Positives = 150/328 (45%), Gaps = 26/328 (7%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           +  S ++ +  + +L +L +ERGL+  TL SY  D R++  +LA        ++ +  ++
Sbjct: 3   DPASNDVARAVRTYLDHLTVERGLATNTLTSYRRDLRRYQEYLAEC-----GVEHLADVT 57

Query: 68  YTEIRAFISKRRTQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
              + AF+ + R        +   S  R++  ++ F ++     +        ++    +
Sbjct: 58  EGTVAAFLVRLREGDRDHPALSATSAARTVVAVRGFHRFAVADGLAATDPASAVKPPTPA 117

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             LP+AL       +++            +  R+ A+L +LYG G RISEA+ L   ++ 
Sbjct: 118 KRLPKALPLADVEAILE----AAGAPGTTLALRDRALLEVLYGTGARISEAVGLDVDDLD 173

Query: 183 DDQ----STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI----QLPLFRGIR 234
             +     T+ ++GKG K R+VP+    R+A+  Y      +L           LF   R
Sbjct: 174 WGESGVEGTVLLRGKGGKERLVPVGSYAREAVDAYLVRGRPELVAASARVTGGALFLNAR 233

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G  L+       + +     G+    + HTLRHSFATHLL  G D+R +Q +LGH  ++T
Sbjct: 234 GGRLSRQSAWAVLVRAAERAGVTRDVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTT 293

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           TQ+YT V      D + E++   HP   
Sbjct: 294 TQVYTLVT----VDNLREVFATAHPRAR 317


>gi|114320644|ref|YP_742327.1| tyrosine recombinase XerD [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227038|gb|ABI56837.1| tyrosine recombinase XerD [Alkalilimnicola ehrlichii MLHE-1]
          Length = 304

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 150/307 (48%), Gaps = 16/307 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L E + +L  L +E+GL + TL +Y  D   F  +L       ++ +        ++ A+
Sbjct: 12  LAELEAFLDALWMEQGLGERTLSAYRSDLLGFQRWLGGQGGSLLSAR------RDQVLAY 65

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +  R  Q    RS+ R L+ ++ F +Y  +     E    ++ + +    LP  L+E + 
Sbjct: 66  LGGRLGQGAKPRSVARLLTSLRRFYRYQLREGRVAEDPTRDVESPRLGRPLPGGLSESEV 125

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+             +  R+  +L +LY  GLR+SE + L+   +   Q  +R+ GKG
Sbjct: 126 ERLL-----AAPDPETPLGQRDRCMLEVLYASGLRVSELVGLSLSELSLSQGLVRVVGKG 180

Query: 195 DKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            + R+VPL  +  + + ++     P  L   +   +F   RG+ L    F   +++  R 
Sbjct: 181 GRERLVPLGETALEQVQQWLREGRPALLGRRVSDAVFVTGRGEGLTRQAFWYRVKKHARS 240

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +G+    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V  +     +  +
Sbjct: 241 VGITRPISPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARQR----LQTL 296

Query: 314 YDQTHPS 320
           + + HP 
Sbjct: 297 HAEHHPR 303


>gi|157148431|ref|YP_001455750.1| site-specific tyrosine recombinase XerD [Citrobacter koseri ATCC
           BAA-895]
 gi|157085636|gb|ABV15314.1| hypothetical protein CKO_04256 [Citrobacter koseri ATCC BAA-895]
          Length = 298

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 151/309 (48%), Gaps = 17/309 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L  L +ER L++ TL +Y  D    + +L          +T+  +   +++  
Sbjct: 5   LARIEQFLDALWLERNLAENTLSAYRRDLSMVVEWLHHRG------KTLATVQSDDLQTL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R        S  R LS  + F ++L + K   +     + + K    LP+ L+E Q 
Sbjct: 59  LAERMDGGYKATSSARLLSATRRFFQHLYREKFREDDPSAQLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+ + ++        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG
Sbjct: 119 ERLLQSPVVDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y     P+ LN      LF   R + +    F   I+     
Sbjct: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHPSI 321
           ++ Q HP  
Sbjct: 290 LHQQHHPRA 298


>gi|168242831|ref|ZP_02667763.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194449828|ref|YP_002047028.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194408132|gb|ACF68351.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205338181|gb|EDZ24945.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 298

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 150/309 (48%), Gaps = 17/309 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L  L +ER L++ TL +Y  D    + +L          +T+      +++  
Sbjct: 5   LARIEQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRG------KTLATAQADDLQTL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R        S  R LS ++ F ++L + K   +     + + K    LP+ L+E Q 
Sbjct: 59  LAERVEGGYKATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+   L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG
Sbjct: 119 ERLLQAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGMVRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y     P+ LN      LF   R + +    F   I+     
Sbjct: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHPSI 321
           ++ Q HP  
Sbjct: 290 LHQQHHPRA 298


>gi|307250820|ref|ZP_07532749.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
 gi|306857179|gb|EFM89306.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
          Length = 297

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 96/309 (31%), Positives = 153/309 (49%), Gaps = 18/309 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L    + +L  L  E GLS+ T  +Y  D   F  +L        T +    L + +++A
Sbjct: 4   LDPIIEQFLDTLWQEHGLSENTSAAYRLDLESFSEWL-------PTPKAFLTLDHFDLQA 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+ +R        S  R LS ++ F ++L       +   L + + +K   LP++L+E+Q
Sbjct: 57  FLGERLELGYKATSSARMLSCLRKFFRFLYTENYRQDDPTLTLTSPRKPAHLPKSLSEEQ 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
            + L+D     + +    I+ R+ A+L LLY  GLR+SE +SL+  N+   Q  +R+ GK
Sbjct: 117 VMDLLD-----SPNTLDPIELRDKAMLELLYATGLRVSELVSLSIDNLSLRQGVVRVVGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           GDK R+VP+       I E++       LN      +F   RG+ +    F   I+    
Sbjct: 172 GDKERLVPIGEEAGYWIQEFFRYGRAILLNNLQSDVVFPSRRGQQMTRQTFWHRIKHYAV 231

Query: 253 YLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             G+     + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V        + 
Sbjct: 232 LAGIDSEKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR----LK 287

Query: 312 EIYDQTHPS 320
            ++ Q HP 
Sbjct: 288 SLHQQFHPR 296


>gi|317508798|ref|ZP_07966443.1| tyrosine recombinase XerD [Segniliparus rugosus ATCC BAA-974]
 gi|316252907|gb|EFV12332.1| tyrosine recombinase XerD [Segniliparus rugosus ATCC BAA-974]
          Length = 340

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 89/335 (26%), Positives = 149/335 (44%), Gaps = 31/335 (9%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + S +L ++ +++L +L +ERG SK T+ SY  D  +++ FL      + +   + Q++ 
Sbjct: 15  LTSDKLSEQVKSYLDHLTVERGASKHTVSSYRRDLDRYMDFL-----RERSATDLAQVTS 69

Query: 69  TEIRAFISKRRT---QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
            +I  F++  R      +   S  R LS ++   K+     +  +     ++  +    L
Sbjct: 70  AQIAEFLAWSRDPEGMGLAQSSAARGLSAVRGLHKFAVLEGMAAQDAAHGVKPPQPGRRL 129

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P+AL   Q + +++   +  S        R++A+L L+Y  G R+SEA+ L   ++    
Sbjct: 130 PKALPVDQVIAIIEASGMADSESDIPRALRDAALLELMYCTGCRVSEAVGLNLLDVDFQA 189

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-------------------NLNIQ 226
            + R+ GKGDK R+VPL      A+  Y       L                        
Sbjct: 190 RSARVLGKGDKERLVPLGGPAVAALDAYLVRGRPALLAARIPRGSASRSYSREAPPGKAT 249

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
             LF   RG+  +       +R      G+    + HTLRHS ATHLL  G D+R +Q +
Sbjct: 250 NALFLNARGERFSRQSTWASLRHAAAKAGVKAEISPHTLRHSCATHLLEGGADVRVVQEL 309

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           LGH  + TTQIYT V+       + E+Y   HP  
Sbjct: 310 LGHASVVTTQIYTMVS----ATTLREVYATAHPRA 340


>gi|89053521|ref|YP_508972.1| site-specific tyrosine recombinase XerC [Jannaschia sp. CCS1]
 gi|88863070|gb|ABD53947.1| phage integrase [Jannaschia sp. CCS1]
          Length = 307

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 126/313 (40%), Positives = 175/313 (55%), Gaps = 9/313 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
            ++  +      WL +L   RG ++ TL +Y  D  +FL F A +         +R L  
Sbjct: 4   ALTPAVRDLLAGWLTHLRGVRGRAEATLTAYGADVGEFLAFQADHLGGSPGPAALRTLQT 63

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++RA++S +R + +G RSL R LS +K+F  +  +R     + +L+MR  K +  LPR 
Sbjct: 64  RDLRAWMSSQRARDVGARSLARRLSAVKAFYNWWAERDGFDATAVLSMRAPKHTRRLPRP 123

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L E  A  ++    L    +  W+ AR+ A++ LLYGCGLRISEAL LT  +++     L
Sbjct: 124 LTEVGAKDMIAG--LADQDDRDWVQARDMAVVTLLYGCGLRISEALGLT-ADLLPLPGIL 180

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKG K R VP+LP+ + A   Y  LCP DL      PLFR IRG  L P    + + 
Sbjct: 181 RITGKGGKEREVPVLPAAQDACARYAQLCPHDLAPGT--PLFRAIRGGALGPRAVAKVME 238

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           + R  LGLP + T H +RHSFATHLL  GGDLR+IQ +LGH  LSTTQ YT V++     
Sbjct: 239 KTRLQLGLPATATPHAMRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYTAVDTAR--- 295

Query: 309 WMMEIYDQTHPSI 321
            +ME+Y   HP  
Sbjct: 296 -LMEVYANAHPKA 307


>gi|257056527|ref|YP_003134359.1| tyrosine recombinase XerD subunit [Saccharomonospora viridis DSM
           43017]
 gi|256586399|gb|ACU97532.1| tyrosine recombinase XerD subunit [Saccharomonospora viridis DSM
           43017]
          Length = 311

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 89/318 (27%), Positives = 146/318 (45%), Gaps = 21/318 (6%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
             +L      ++ +L +ERG ++ T+  Y  D R++L  LA        +  +RQ++   
Sbjct: 6   DHDLRVVVAAYVDHLTVERGTARNTVDGYARDLRRYLAHLA-----DAGVTDLRQVARDH 60

Query: 71  IRAFISKRRTQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +  F +  R  +     +   S  R+LS ++   ++      T E    ++R    +  L
Sbjct: 61  VVGFAASLRHGEGDRPPLAPSSAARALSAVRGLHRFAHAEGWTEEDPARDVRPPPLTRRL 120

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P+AL     L L     L+T         R+ A+L LLY  G RISEA  L   ++   +
Sbjct: 121 PKALPVADVLRL-----LNTPTGDDARSLRDRALLELLYSTGARISEATGLDVDDVDRAE 175

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVF 243
            T+ + GKG + R+VP+     +A+  Y       L    +    +F   RG  L+    
Sbjct: 176 RTVVLDGKGGRQRLVPVGRPALEALDAYLIRARPALAAKGRGTGAVFLNARGGRLSRQGA 235

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            + ++      G+    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQ+YT V  
Sbjct: 236 WQVLKVAAERAGISTPVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVT- 294

Query: 304 KNGGDWMMEIYDQTHPSI 321
               + + E+Y  THP  
Sbjct: 295 ---VNTLREVYATTHPRA 309


>gi|193212286|ref|YP_001998239.1| tyrosine recombinase XerD [Chlorobaculum parvum NCIB 8327]
 gi|193085763|gb|ACF11039.1| tyrosine recombinase XerD [Chlorobaculum parvum NCIB 8327]
          Length = 304

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 92/304 (30%), Positives = 149/304 (49%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L IER  S  T +SY  D  ++L  L     +        + +   IR FI +
Sbjct: 12  LDTFLNYLTIERNFSGNTRESYLNDLGRYLAHLQGQQVKP------EEATPDHIRQFIEE 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +   S+ R++S I+S+ K+L   +I   +   N+   K + +LP  L  ++ + L
Sbjct: 66  LHDIGLEASSVARNISAIRSYHKFLLAERIAQANPAENIHQPKLARTLPSVLTVEEMMAL 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++  L    H       R+ A+L LLY  G+R+SE + L   N+  D+  +R+ GKG K 
Sbjct: 126 LEAPLRR--HPPGSFMLRDKAMLELLYATGIRVSELIGLGKLNLYLDEGFIRVFGKGSKE 183

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +  K +  Y + L P  ++   +  LF   RG  L+       +RQ     G+
Sbjct: 184 RLVPVGRNATKWLKRYLEELRPGMVSATSKDVLFLNSRGGKLSRMSAWNIVRQHAIIAGI 243

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HT RHSFATHLL  G DLR++Q +LGH  +  TQIYT+++      ++ E++  
Sbjct: 244 EKPISPHTFRHSFATHLLEGGADLRAVQEMLGHSSIIATQIYTHID----RSFVKEVHRT 299

Query: 317 THPS 320
            HP 
Sbjct: 300 FHPR 303


>gi|118617318|ref|YP_905650.1| site-specific tyrosine recombinase XerD [Mycobacterium ulcerans
           Agy99]
 gi|118569428|gb|ABL04179.1| integrase/recombinase, XerD [Mycobacterium ulcerans Agy99]
          Length = 313

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 88/323 (27%), Positives = 144/323 (44%), Gaps = 19/323 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + +  L  + Q +L +L IERG++  TL SY  D R++   L     E   I  + ++  
Sbjct: 1   MSTLTLDTQLQGYLDHLAIERGVAANTLSSYRRDLRRYSKHL-----EDRGITDLAKVGE 55

Query: 69  TEIRAFISKRRTQ-------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            ++  F+   R          +   S  R+L  ++   ++     +        +R    
Sbjct: 56  DDVSEFLVALRRGDPESGVLGLSAVSAARALIAVRGLHRFAAAEGLAALDVARAVRPPTP 115

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              LP++L   + L L++        +   +  RN A+L LLY  G RISEA+ L   +I
Sbjct: 116 GRRLPKSLTIDEVLALLEGAGGDNPADG-PLTLRNRALLELLYSTGSRISEAVGLDVDDI 174

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLN 239
                T+ +QGKG K R+VP+     +A+  Y      +L    +    +F   RG  L+
Sbjct: 175 DTQARTVLLQGKGGKQRLVPVGRPAVQALDAYLVRGRPELARRGRGTPAIFLNARGGRLS 234

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                + ++       +    + H LRHSFATHLL  G D+R +Q +LGH  ++TTQIYT
Sbjct: 235 RQSAWQVLQDAAERADITSGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 294

Query: 300 NVNSKNGGDWMMEIYDQTHPSIT 322
            V        + E++   HP  T
Sbjct: 295 LVT----VHALREVWAGAHPRAT 313


>gi|229527130|ref|ZP_04416524.1| tyrosine recombinase XerC [Vibrio cholerae 12129(1)]
 gi|229335361|gb|EEO00844.1| tyrosine recombinase XerC [Vibrio cholerae 12129(1)]
          Length = 311

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 81/328 (24%), Positives = 163/328 (49%), Gaps = 17/328 (5%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+ + L   +   L +  + +   L  E+GLS  T ++Y+        +L      ++ +
Sbjct: 1   MKNDEL-TPLPDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLV-----QVGL 54

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
               QL    +R  + + + Q +   S+   LS ++SFL +L  R     +    +   +
Sbjct: 55  THWTQLDSAWVRQLVMQGKRQGMKASSIATRLSSLRSFLDFLILRGELEANPAKGVSAPR 114

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K  +LP+ L+  +   L++        +   +  R+ AI+ L+YG GLR++E +S+  ++
Sbjct: 115 KQRTLPKNLDVDEMAQLLEVT------DDDPLSIRDRAIMELMYGAGLRLAELVSIDVKD 168

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           +   +  +R+ GKG+K R V      ++ + ++  L    L  + +  LF    G  ++ 
Sbjct: 169 VNLSEGEIRVIGKGNKERKVWFAGQAQEWVGKWLKLRS-QLADSAETALFVSKLGTRISH 227

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              Q+ + +  +   +    + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+
Sbjct: 228 RSVQKRMAEWGQKQAVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH 287

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           ++ ++    + ++YDQ HP   +K+K +
Sbjct: 288 LDFQH----LAQVYDQAHPRARKKNKDD 311


>gi|323697647|ref|ZP_08109559.1| integrase family protein [Desulfovibrio sp. ND132]
 gi|323457579|gb|EGB13444.1| integrase family protein [Desulfovibrio desulfuricans ND132]
          Length = 316

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 107/306 (34%), Positives = 167/306 (54%), Gaps = 16/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  LE+E+G S  T++SY  D  QF  FL      K +++   +L+   +R F+++
Sbjct: 15  VRGFLAFLEVEKGYSPATIRSYGTDLEQFEEFLR---GRKASLERPARLNRDHVRGFLAE 71

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +++   S+ R LS ++++ KYL + K+ T+  +  +RN K+    P+ LN  QA++L
Sbjct: 72  LHRRQMTKTSMGRKLSSLRAYFKYLLRHKVITKDPVAGIRNPKQEKHHPQVLNVDQAVSL 131

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++  +     E      R+ A+  +LYG GLRISEA+ L   ++  D   +R+ GKG K 
Sbjct: 132 MEARV-----EPDPEGLRDVALAEVLYGSGLRISEAIGLDLNDVDSD--VIRVTGKGSKE 184

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLG 255
           RIVPL  +    I  Y       L  N  +  LF   R  K L+     R + +L +  G
Sbjct: 185 RIVPLSDAAVARIRRYLGQRHAFLKGNYAEQALFLSSRAGKRLDRRQANRIVARLGKLAG 244

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           LPL    HTLRHSFATH+L  G DLRS+Q +LGH  L+TTQ YT+++ +     +M++YD
Sbjct: 245 LPLDVHPHTLRHSFATHMLEAGADLRSVQELLGHENLTTTQRYTHLDMQR----IMQVYD 300

Query: 316 QTHPSI 321
             HP  
Sbjct: 301 HAHPLA 306


>gi|317124968|ref|YP_004099080.1| tyrosine recombinase XerD subunit [Intrasporangium calvum DSM
           43043]
 gi|315589056|gb|ADU48353.1| tyrosine recombinase XerD subunit [Intrasporangium calvum DSM
           43043]
          Length = 311

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 96/322 (29%), Positives = 152/322 (47%), Gaps = 19/322 (5%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P+  + +L +E + WL ++ IE+G S  TL+SYE D R++   L         I+    +
Sbjct: 3   PKPRTTQLDREVRGWLDHVRIEKGASDNTLKSYERDLRKYREHL-----HHRGIERAAAV 57

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           S  ++  F++  R + +   S  R+L  ++ F ++L            N+      + LP
Sbjct: 58  SERDVTDFLASLRERGLAASSAARTLVAVRGFHRFLALEGEVAGDPAGNVAPPTPPSRLP 117

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---- 182
           +A+  +    L    L  +S        R+ A+L +LYG G RISEA+ L   ++     
Sbjct: 118 KAIPIEAVERL----LAASSVGDTPESLRDRALLEVLYGVGARISEAIDLDVDDLDTGVA 173

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNP 240
            +   +R+ GKG K RIVP+     +A+  Y       L    Q    LF   RG+ L+ 
Sbjct: 174 GEVGLVRLLGKGSKERIVPVGRFAVEAVDAYLVRGRPALAQRGQGGPALFLNQRGRRLSR 233

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                 +++     GL    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT 
Sbjct: 234 QSAWSVVQRAAERAGLTEHVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTL 293

Query: 301 VNSKNGGDWMMEIYDQTHPSIT 322
           V+       + E+Y   HP   
Sbjct: 294 VSP----HRLREVYAGAHPRAR 311


>gi|52080216|ref|YP_079007.1| site-specific tyrosine recombinase XerC [Bacillus licheniformis
           ATCC 14580]
 gi|52785593|ref|YP_091422.1| site-specific tyrosine recombinase XerC [Bacillus licheniformis
           ATCC 14580]
 gi|81385577|sp|Q65JN5|XERC_BACLD RecName: Full=Tyrosine recombinase xerC
 gi|52003427|gb|AAU23369.1| site-specific integrase/recombinase [Bacillus licheniformis ATCC
           14580]
 gi|52348095|gb|AAU40729.1| CodV [Bacillus licheniformis ATCC 14580]
          Length = 304

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 94/306 (30%), Positives = 154/306 (50%), Gaps = 17/306 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +++ L+IE+  SK T+  Y      F  FL         I+    ++Y ++R F+++   
Sbjct: 11  FIEYLQIEKNYSKYTIVGYISSIEDFERFLHVQ-----GIKGFEDVTYPDVRIFLTEAHE 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  R++ + +S ++SF K+L + K+  E+  L +   K+   +P+ L EK+   L + 
Sbjct: 66  KGLTRRTISKKISALRSFYKFLLREKLVKENPFLLVSLPKQDKRIPKFLYEKELEELFEV 125

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L T      +  RN A+L  LY  G+R+SE  SL   ++     T+ + GKG K R +
Sbjct: 126 SDLSTP-----LGQRNQALLEFLYATGMRVSELCSLKESDLDLFLDTVLVHGKGRKQRYI 180

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           P     R+A+  Y       L L  + P   +F   RG PL P   +  + +L +     
Sbjct: 181 PFGSFAREALDLYLQNGRRILLLKAKEPCPFIFLNQRGGPLTPRGVRYILGELVKKTSGT 240

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           L    H LRH+FATHLL+ G DLRS+Q +LGH  LS+TQ+YT+V+     D + + Y   
Sbjct: 241 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVS----KDMLRKTYMSH 296

Query: 318 HPSITQ 323
           HP   +
Sbjct: 297 HPRAHK 302


>gi|46143544|ref|ZP_00135036.2| COG4974: Site-specific recombinase XerD [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126209006|ref|YP_001054231.1| site-specific tyrosine recombinase XerD [Actinobacillus
           pleuropneumoniae L20]
 gi|303253035|ref|ZP_07339187.1| site-specific tyrosine recombinase XerD [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307246462|ref|ZP_07528535.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|307248587|ref|ZP_07530602.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|307255445|ref|ZP_07537252.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|307257614|ref|ZP_07539374.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|307259897|ref|ZP_07541611.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|307262027|ref|ZP_07543682.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|126097798|gb|ABN74626.1| tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
 gi|302648099|gb|EFL78303.1| site-specific tyrosine recombinase XerD [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306852666|gb|EFM84898.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|306854937|gb|EFM87125.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|306861629|gb|EFM93616.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|306863917|gb|EFM95840.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|306866067|gb|EFM97941.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|306868310|gb|EFN00132.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
          Length = 297

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 96/309 (31%), Positives = 152/309 (49%), Gaps = 18/309 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L    + +L  L  E GLS+ T  +Y  D   F  +L        T +    L + +++A
Sbjct: 4   LDPIIEQFLDTLWQEHGLSENTSAAYRLDLESFSEWL-------PTPKAFLTLDHFDLQA 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+  R        S  R LS ++ F ++L       +   L + + +K   LP++L+E+Q
Sbjct: 57  FLGGRLELGYKATSSARMLSCLRKFFRFLYTENYRQDDPTLTLTSPRKPAHLPKSLSEEQ 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
            + L+D     + +    I+ R+ A+L LLY  GLR+SE +SL+  N+   Q  +R+ GK
Sbjct: 117 VMDLLD-----SPNTLDPIELRDKAMLELLYATGLRVSELVSLSIDNLSLRQGVVRVVGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           GDK R+VP+       I E++       LN      +F   RG+ +    F   I+    
Sbjct: 172 GDKERLVPIGEEAGYWIQEFFRYGRAILLNNLQSDVVFPSRRGQQMTRQTFWHRIKHYAV 231

Query: 253 YLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             G+     + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V        + 
Sbjct: 232 LAGIDSEKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR----LK 287

Query: 312 EIYDQTHPS 320
            ++ Q HP 
Sbjct: 288 SLHQQFHPR 296


>gi|229525024|ref|ZP_04414429.1| tyrosine recombinase XerC [Vibrio cholerae bv. albensis VL426]
 gi|229338605|gb|EEO03622.1| tyrosine recombinase XerC [Vibrio cholerae bv. albensis VL426]
          Length = 311

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 81/328 (24%), Positives = 163/328 (49%), Gaps = 17/328 (5%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+ + L   +   L +  + +   L  E+GLS  T ++Y+        +L      ++ +
Sbjct: 1   MKNDEL-TPLPDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLV-----QVGL 54

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
               QL    +R  + + + Q +   S+   LS ++SFL +L  R     +    +   +
Sbjct: 55  THWTQLDAAWVRQLVMQGKRQGMKASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPR 114

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K  +LP+ L+  +   L++        +   +  R+ AI+ L+YG GLR++E +S+  ++
Sbjct: 115 KQRTLPKNLDVDEMAQLLEVT------DDDPLSIRDRAIMELMYGAGLRLAELVSIDVKD 168

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           +   +  +R+ GKG+K R V      ++ + ++  L    L  + +  LF    G  ++ 
Sbjct: 169 VNLSEGEIRVIGKGNKERKVWFAGQAQEWVGKWLKLRS-QLADSAETALFVSKLGTRISH 227

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              Q+ + +  +   +    + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+
Sbjct: 228 RSVQKRMAEWGQKQAVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH 287

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           ++ ++    + ++YDQ HP   +K+K +
Sbjct: 288 LDFQH----LAQVYDQAHPRARKKNKDD 311


>gi|229822894|ref|ZP_04448964.1| hypothetical protein GCWU000282_00184 [Catonella morbi ATCC 51271]
 gi|229787707|gb|EEP23821.1| hypothetical protein GCWU000282_00184 [Catonella morbi ATCC 51271]
          Length = 302

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 84/316 (26%), Positives = 147/316 (46%), Gaps = 18/316 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++ +  +  Q++ + L ++   S  T+QSY  D  +F  +L      +  I  +  +   
Sbjct: 1   MTMKFSQSVQDFERYLLLDMNRSANTIQSYGRDLAKFQAYLT-----EQGIDKVEAIDEV 55

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +RAF++K         S  R LS +K F  +L+K  I   + +  +   K+   LP+ L
Sbjct: 56  TVRAFLAKLSQDAYAASSTSRMLSSLKQFFLFLRKEGILETNPMSLVHRPKQGRHLPKVL 115

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              +   L+          +     R+ AI  L+Y  GLR++E + L  +++  +   ++
Sbjct: 116 TASEIEALL-----QAPDTSSPHGLRDRAIFELMYATGLRVTELVQLKLEDLHLELGFIQ 170

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCP----FDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             GKGDK R+VPL+    + +  Y +                 +F   RGK        +
Sbjct: 171 TLGKGDKERLVPLIDEAIEWLEAYLEQVRPSFLRLAGSASPQEVFLTERGKAFTRQGIWK 230

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            + +     G+  + + H LRHSFATHLL NG DLR +Q +LGH  +STTQIYT+++++ 
Sbjct: 231 NLNKYVALAGIKQTVSPHMLRHSFATHLLENGADLRMVQELLGHADISTTQIYTHISTQR 290

Query: 306 GGDWMMEIYDQTHPSI 321
               + E+Y +  P  
Sbjct: 291 ----LQEVYRKYFPRA 302


>gi|226227035|ref|YP_002761141.1| tyrosine recombinase XerD [Gemmatimonas aurantiaca T-27]
 gi|226090226|dbj|BAH38671.1| tyrosine recombinase XerD [Gemmatimonas aurantiaca T-27]
          Length = 312

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 84/306 (27%), Positives = 155/306 (50%), Gaps = 15/306 (4%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             Q +   L+IE G S  T+++Y  D  +    +       + I   + ++   +R F+ 
Sbjct: 21  HLQAFEDALQIEEGASPRTIEAYRRDVIRCAAQM-----RAMGITQAKDITPAALREFVY 75

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             +   +   S++R++S ++++ + +    + T      + + ++  +LP  L+  +   
Sbjct: 76  HLKDLGLAGSSIRRNISALRTWFRIMVAEGLVTTDPTERLDSPQRWRTLPEVLSVDEVTR 135

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+           + +  R+ A+L L YG GLR+SE + ++ +++M + S +R+ GKG+K
Sbjct: 136 LL-----AAPGLDERLAFRDRAMLELAYGAGLRVSEWIGMSVKDVMLEDSLVRVLGKGNK 190

Query: 197 IRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R+VP+  S   A+  Y   L P       +  LF   RG PL+     + +R+     G
Sbjct: 191 ERLVPIGRSAIGAVAVYLRELRPVLERGGGKGILFLNGRGAPLSRMGAWKLVRKYVGMAG 250

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + HTLRHSFATHLL  G DLR++Q +LGH  ++TTQIYT+V+     +++  ++ 
Sbjct: 251 IEKPVSPHTLRHSFATHLLEGGADLRAVQEMLGHADIATTQIYTHVD----REYLRSVHR 306

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 307 QFHPRA 312


>gi|294625642|ref|ZP_06704265.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|294666817|ref|ZP_06732050.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292600065|gb|EFF44179.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292603401|gb|EFF46819.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 305

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 88/316 (27%), Positives = 153/316 (48%), Gaps = 19/316 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT-----EEKITIQTIRQLSYT 69
           +     +L  L++ER +S  TL +Y  D    +++ A  T     ++        Q    
Sbjct: 1   MSSVDEFLTYLQVERQVSAHTLDAYRRDLAALVVWAAEQTTDDGVQDAAVPAETAQFDSA 60

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R F++    + +  +SL+R LS  +S+  +L K    + S    +R  K    LP+ L
Sbjct: 61  HLRQFVAAEHRRGLSAKSLQRRLSACRSYYAWLLKHGRISASPAAALRAPKAPRKLPQVL 120

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  +A+ LV+            +  R+ A+L + Y  GLR+SE  +L  +++  D   + 
Sbjct: 121 DADEAVRLVEVP------TDAPLGLRDRALLEVFYSSGLRLSELCALRWRDLDLDSGLVM 174

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG K R+VP+      A+ E+      D   +    +F G  G  ++    Q  I+Q
Sbjct: 175 VLGKGSKQRLVPVGSHAIAALREWR----RDSGASADSHVFPGRAGGAISQRAVQIRIKQ 230

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           L    G+      H LRHSFA+H+L + GDLR +Q +LGH  ++TTQIYT+++ ++    
Sbjct: 231 LAVRQGMFKDVHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQH---- 286

Query: 310 MMEIYDQTHPSITQKD 325
           + ++YD  HP   +K 
Sbjct: 287 LAKVYDAAHPRARRKK 302


>gi|308173576|ref|YP_003920281.1| site-specific tyrosine recombinase [Bacillus amyloliquefaciens DSM
           7]
 gi|307606440|emb|CBI42811.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus amyloliquefaciens DSM 7]
 gi|328553491|gb|AEB23983.1| site-specific tyrosine recombinase XerC [Bacillus amyloliquefaciens
           TA208]
 gi|328911717|gb|AEB63313.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus amyloliquefaciens LL3]
          Length = 305

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 88/308 (28%), Positives = 154/308 (50%), Gaps = 17/308 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +++ L+IE+  S+ T+ +Y     +F +FL         I  + + +Y ++R F+++   
Sbjct: 12  FVEYLQIEKNYSQYTIVNYVNSIEEFGMFL-----HAQNINGLNEAAYHDVRIFLTEAYE 66

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  +++ + +S ++SF K+L + K+  E+    +   K+   +P+ L EK+   L   
Sbjct: 67  KGLSRKTISKKISALRSFYKFLMREKLVEENPFQLVHLPKQEKRIPKFLYEKELEELF-- 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                S  ++    R+ A+L LLY  G+R+SE  +LT  ++     T+ + GKG K R +
Sbjct: 125 ---AVSDRSQPSGMRDQALLELLYATGMRVSECCTLTVSDLDLFMDTVLVHGKGRKQRYI 181

Query: 201 PLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           P     R A+  Y +    C  +        LF   RG PL     +  +  L +     
Sbjct: 182 PFGSYARDALELYINSGRQCLLEKAKEPHDVLFVNQRGGPLTARGIRYILSGLVKKASGT 241

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           L    H LRH+FATHLL+ G DLRS+Q +LGH  LS+TQIYT+V+ +     +   Y   
Sbjct: 242 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKE----MLRNTYMSH 297

Query: 318 HPSITQKD 325
           HP   +++
Sbjct: 298 HPRAFKEN 305


>gi|311030138|ref|ZP_07708228.1| site-specific tyrosine recombinase XerC [Bacillus sp. m3-13]
          Length = 302

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 97/326 (29%), Positives = 161/326 (49%), Gaps = 29/326 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+  N P I          ++L+ L+IE+  SK T+  Y+ D   F  F+     ++  I
Sbjct: 1   MQNVNAPLI----------SFLEYLQIEKNYSKYTIVFYQKDIEDFFDFM-----KEEAI 45

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            +I ++++TE R ++++   +K   +S+ R  S ++SF K+L + +   ++   ++   K
Sbjct: 46  SSINEVTHTEARMYLTRLHQKKYARKSVARKTSSLRSFYKFLLREEKVEQNPFTSVSLPK 105

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +   LP+ L  ++   L     L T      +  RN AIL LLY  G+RISE   +   +
Sbjct: 106 QEKRLPQFLYSEELDKLFAVSDLETP-----LGQRNQAILELLYATGIRISECCHIQIHD 160

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRG 235
           I     T+ + GKG+K R +P     + AI  Y +     L    + P     LF   RG
Sbjct: 161 IDFQVGTILVTGKGNKQRYIPFGSFAQDAIKIYLEDGRKSLLEKQKTPNSTKHLFLNFRG 220

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             L P   +  +  + +     L  + H LRH+FATH+L+ G DLR +Q +LGH  LS+T
Sbjct: 221 GALTPRGVRLILNDMVQQACSTLHISPHMLRHTFATHMLNEGADLRVVQELLGHASLSST 280

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHPSI 321
           QIYT+V  ++    + + Y+Q HP  
Sbjct: 281 QIYTHVTKEH----LQKTYNQFHPRA 302


>gi|293393894|ref|ZP_06638201.1| tyrosine recombinase XerC [Serratia odorifera DSM 4582]
 gi|291423721|gb|EFE96943.1| tyrosine recombinase XerC [Serratia odorifera DSM 4582]
          Length = 304

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 83/315 (26%), Positives = 151/315 (47%), Gaps = 17/315 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
            ++  L      +L+ L++ER LS LT  SY    +  +   A     ++ +   RQL  
Sbjct: 4   PLAASLQPPVDAFLRYLKVERQLSPLTQISYSRQLQALIALAA-----ELGVSEWRQLDA 58

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R   ++ +   +   SL   LS ++SFL +L  +     +    +R  +    LP+ 
Sbjct: 59  VTVRQLAARSKRAGLQSSSLALRLSALRSFLDWLVSQGQIVANPAKGIRTPRSGRHLPKN 118

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++  +   L++  L         +  R+ A+L ++YG GLR+SE + L  +++      +
Sbjct: 119 IDVDEMGQLLEIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGLDCRHVDMAAGEV 172

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +P+  +    +  +  L   +L       +F   +GK ++P   Q+   
Sbjct: 173 WVMGKGSKERKLPIGRTAVTWLGHWLALR--ELFAPGDDAMFLSNQGKRISPRNVQKRFA 230

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     G+      H LRHSFATH+L + GDLR++Q +LGH  L+TTQIYT+++ ++   
Sbjct: 231 EWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH--- 287

Query: 309 WMMEIYDQTHPSITQ 323
            +  +YD  HP   +
Sbjct: 288 -LANVYDAAHPRAKR 301


>gi|117619677|ref|YP_855009.1| tyrosine recombinase XerC [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117561084|gb|ABK38032.1| tyrosine recombinase XerC [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 325

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 82/308 (26%), Positives = 150/308 (48%), Gaps = 15/308 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            E   +++ L +ER LS  T  +Y+         L      K+ +    +L  +++R+ +
Sbjct: 25  DELAGFIEYLRVERQLSPHTRSNYQAHLEAMTAELV-----KLGVDDWARLEASQVRSLV 79

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++     +  RSL   +S ++SF  +  ++     +    +   K+   LP+ L+  +  
Sbjct: 80  TRMHKAGLAPRSLATKVSALRSFCDWQVRQGRLVANPARGIVTPKQGRPLPKNLDVDEM- 138

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
                 LL+ + E   +  R+ AI+ L+Y  GLR++E + L   ++  D+  LR+ GKG 
Sbjct: 139 ----YQLLNITDEQDPLAVRDRAIMELMYSSGLRLAELVGLNLADVKLDERQLRVTGKGS 194

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           + R++P+     + + ++  L P  L  +    LF   R + L+    Q  +        
Sbjct: 195 RERVLPVGRMAVEWLHKWLKLRPL-LAGDELEALFVSKRKQRLSARSVQERLDGWGNKQA 253

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L      H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++    + ++YD
Sbjct: 254 LNAHVHPHKLRHSFATHMLESSGDLRAVQELLGHADLSTTQIYTHLDFQH----LAKVYD 309

Query: 316 QTHPSITQ 323
             HP   +
Sbjct: 310 SAHPRAKR 317


>gi|319646005|ref|ZP_08000235.1| tyrosine recombinase xerC [Bacillus sp. BT1B_CT2]
 gi|317391755|gb|EFV72552.1| tyrosine recombinase xerC [Bacillus sp. BT1B_CT2]
          Length = 305

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 94/306 (30%), Positives = 154/306 (50%), Gaps = 17/306 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +++ L+IE+  SK T+  Y      F  FL         I+    ++Y ++R F+++   
Sbjct: 12  FIEYLQIEKNYSKYTIVGYISSIEDFERFLHVQ-----GIKGFEDVTYPDVRIFLTEAHE 66

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  R++ + +S ++SF K+L + K+  E+  L +   K+   +P+ L EK+   L + 
Sbjct: 67  KGLTRRTISKKISALRSFYKFLLREKLVKENPFLLVSLPKQDKRIPKFLYEKELEELFEV 126

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L T      +  RN A+L  LY  G+R+SE  SL   ++     T+ + GKG K R +
Sbjct: 127 SDLSTP-----LGQRNQALLEFLYATGMRVSELCSLKESDLDLFLDTVLVHGKGRKQRYI 181

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           P     R+A+  Y       L L  + P   +F   RG PL P   +  + +L +     
Sbjct: 182 PFGSFAREALDLYLQNGRRILLLKAKEPCPFIFLNQRGGPLTPRGVRYILGELVKKTSGT 241

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           L    H LRH+FATHLL+ G DLRS+Q +LGH  LS+TQ+YT+V+     D + + Y   
Sbjct: 242 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVS----KDMLRKTYMSH 297

Query: 318 HPSITQ 323
           HP   +
Sbjct: 298 HPRAHK 303


>gi|332678853|gb|AEE87982.1| Tyrosine recombinase xerD [Francisella cf. novicida Fx1]
          Length = 292

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 88/308 (28%), Positives = 145/308 (47%), Gaps = 18/308 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +      +L NL +E GLS+ ++ SY  D +    + A           +  L + ++ A
Sbjct: 1   MSSAVDAFLDNLWLEHGLSQNSISSYRTDLKFLQNYFAK--------TDLISLDFEQLYA 52

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           FIS R       RS  R +S ++ F  +L     T  +    +   K +  LP+ + E  
Sbjct: 53  FISYRSKNGYSSRSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETD 112

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+          T+ +  R+ A+L L+Y  GLR+SE + L   +I  +   +++ GK
Sbjct: 113 VERLL-----QAPDMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMGK 167

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K RIVP+     + + +Y+      L+ N  +  +F     K +    F   I+    
Sbjct: 168 GSKERIVPIGEYALEYLQKYFAEARTSLSKNFKEKAVFISKHAKRITRQSFWHRIKNYAL 227

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    + HTLRH+FATHLL++G DLRS+Q +LGH  +STT IYT+++       +  
Sbjct: 228 IAGINTDISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR----LQV 283

Query: 313 IYDQTHPS 320
           IY + HP 
Sbjct: 284 IYQKHHPR 291


>gi|188532374|ref|YP_001906171.1| site-specific tyrosine recombinase XerC [Erwinia tasmaniensis
           Et1/99]
 gi|188027416|emb|CAO95263.1| Tyrosine recombinase XerC [Erwinia tasmaniensis Et1/99]
          Length = 302

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 79/310 (25%), Positives = 150/310 (48%), Gaps = 17/310 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL   + +L+ L++ER LS LT  +Y       ++ L     +++ +    +L    +R+
Sbjct: 7   LLAAVEGFLRFLKVERQLSPLTQINYRRQLSALIVLL-----DELKVVDWARLDAALVRS 61

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             ++     +   SL   LS ++SFL +L  + +   +    +   +    LP+ ++  +
Sbjct: 62  LAARSTRSGLKPASLALRLSALRSFLDWLMSQGMIKANPAKGVATPRAGRHLPKNIDVDE 121

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++  L         +  R+ A+L ++YG GLR+SE + +   ++      + + GK
Sbjct: 122 VNRLLEIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGIDLGHLDLASGEVWVVGK 175

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R +P+  +    I  + ++   +L       LF   +GK ++    Q+   +    
Sbjct: 176 GSKERRLPMGRTAVHWIENWLEMR--ELFDPEDNALFLSNKGKRISTRNVQKRFAEWGVK 233

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+      H LRHSFATH+L + GDLR++Q +LGH  L+TTQIYT+++ ++    +  +
Sbjct: 234 QGISSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----LASV 289

Query: 314 YDQTHPSITQ 323
           YD  HP   +
Sbjct: 290 YDAAHPRAKR 299


>gi|148264429|ref|YP_001231135.1| tyrosine recombinase XerD [Geobacter uraniireducens Rf4]
 gi|146397929|gb|ABQ26562.1| tyrosine recombinase XerD subunit [Geobacter uraniireducens Rf4]
          Length = 295

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 95/301 (31%), Positives = 154/301 (51%), Gaps = 15/301 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +E+GL+K TL++Y  D   +L FLA              ++  ++   +++ + 
Sbjct: 8   FLNYLLVEKGLTKNTLEAYSRDLSVYLDFLAERKR-----TNPENVTALDVVEHVTRLKD 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS  R+LS I+ F ++L     +  +    +   K  N LP  L+ ++  +L+  
Sbjct: 63  SGLAPRSRARALSAIRMFHRFLLVENYSVSNPTAIIETPKTVNRLPEVLSGREVESLL-- 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
               T+      + R+ A+L +LY  GLR+SE +SL  +++  D   L   GKG+K R+V
Sbjct: 121 ---ATAKGDGTFEVRDRAMLEVLYATGLRVSELVSLKLRDVNIDAGYLLTMGKGEKERLV 177

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+  S R AI EY       L+       LF    G  ++   F   I++     G+  +
Sbjct: 178 PMGESARTAIGEYLAGIRILLDRKGDNEYLFLSRLGGKMSRQAFWNIIKKRSGAAGIRKN 237

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRHSFATHLL NG DLRS+Q +LGH  LS+TQIYT+V  +     + +++ + HP
Sbjct: 238 ISPHTLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRER----LKKLHQEFHP 293

Query: 320 S 320
            
Sbjct: 294 R 294


>gi|94266574|ref|ZP_01290258.1| Tyrosine recombinase XerD [delta proteobacterium MLMS-1]
 gi|93452792|gb|EAT03324.1| Tyrosine recombinase XerD [delta proteobacterium MLMS-1]
          Length = 325

 Score =  264 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 94/301 (31%), Positives = 149/301 (49%), Gaps = 12/301 (3%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +LQ L  ER L+  TL +Y  D   F  FLA        I    +++   +RA++   R 
Sbjct: 35  FLQYLAAERRLAANTLTAYHTDLLSFFDFLARRRP-TPAISGPAEITPEHLRAYLEACRR 93

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           ++I  RS  R LS +++F ++L++  +        +   K    LP+ LN  +      N
Sbjct: 94  RQIAARSNARRLSALRAFFRFLRRENLIPADPSALLDLPKPGRPLPKVLNLDEV-----N 148

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL        +  R+ A+L+LLY  G+R+SE ++L    +      LR+ GKG K R++
Sbjct: 149 QLLAGPAAATPLALRDHAMLHLLYATGMRVSELVNLPVAAVN-QAGHLRVLGKGSKERLI 207

Query: 201 PLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P   +  +++  Y     P  L       LF   RG  +    F + IR   R   +   
Sbjct: 208 PFGAAAGRSLARYITQGRPRLLKKRRSDFLFVTNRGTAMTRLRFWQIIRDRARVCRIDKE 267

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRHSFATHLL +G DLR++Q++LGH  ++TTQIYT+V+++     + +I+ Q HP
Sbjct: 268 VGPHVLRHSFATHLLEHGADLRAVQAMLGHADIATTQIYTHVDAQR----LKKIHRQFHP 323

Query: 320 S 320
            
Sbjct: 324 R 324


>gi|322419214|ref|YP_004198437.1| tyrosine recombinase XerD [Geobacter sp. M18]
 gi|320125601|gb|ADW13161.1| tyrosine recombinase XerD [Geobacter sp. M18]
          Length = 292

 Score =  264 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 91/301 (30%), Positives = 150/301 (49%), Gaps = 18/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +ERG +  T+ +Y  D  ++L +L     +        Q+  +++  ++ K + 
Sbjct: 8   FLNYLLVERGAAANTVAAYSRDLTRYLAYLGEREPD--------QIRPSDVTGYLGKLKG 59

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + I  RS  R+LS ++   ++L +      +    +   K    LP  L+ ++   L+  
Sbjct: 60  EGIAPRSRARALSALRMLHRFLVREGHCEVNPTAIVEAPKGLLKLPTVLSSREVEALL-- 117

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
               +  +T  I+ R+ A+L LLY  GLR+SE + L   ++      L   GKGDK R++
Sbjct: 118 ---ASPLDTGAIELRDKAMLELLYATGLRVSELVGLKTGDVNIAAGYLMTIGKGDKERLI 174

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+  S  +A+ EY +    +L      PL F    G+ +    F   I++     G+   
Sbjct: 175 PMGESACRAVGEYLEKARQELLKQKSSPLLFISRLGEGMTRQAFWNIIKKRALQAGVRSG 234

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRHSFATHLL NG DLRS+Q +LGH  LSTTQIYT+V  +     +  ++ + HP
Sbjct: 235 ISPHTLRHSFATHLLENGADLRSVQIMLGHADLSTTQIYTHVTRER----LKRLHAEFHP 290

Query: 320 S 320
            
Sbjct: 291 R 291


>gi|218706400|ref|YP_002413919.1| site-specific tyrosine recombinase XerD [Escherichia coli UMN026]
 gi|293406393|ref|ZP_06650319.1| xerD [Escherichia coli FVEC1412]
 gi|298382129|ref|ZP_06991726.1| tyrosine recombinase xerD [Escherichia coli FVEC1302]
 gi|300896210|ref|ZP_07114759.1| tyrosine recombinase XerD [Escherichia coli MS 198-1]
 gi|301027413|ref|ZP_07190750.1| tyrosine recombinase XerD [Escherichia coli MS 69-1]
 gi|218433497|emb|CAR14400.1| site-specific tyrosine recombinase [Escherichia coli UMN026]
 gi|291426399|gb|EFE99431.1| xerD [Escherichia coli FVEC1412]
 gi|298277269|gb|EFI18785.1| tyrosine recombinase xerD [Escherichia coli FVEC1302]
 gi|300359944|gb|EFJ75814.1| tyrosine recombinase XerD [Escherichia coli MS 198-1]
 gi|300394921|gb|EFJ78459.1| tyrosine recombinase XerD [Escherichia coli MS 69-1]
          Length = 298

 Score =  264 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 150/309 (48%), Gaps = 17/309 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L  L +E+ L++ TL +Y  D    + +L           T+      +++A 
Sbjct: 5   LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG------STLATAQSDDLQAL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R        S  R LS ++   +YL + K   +    ++ + K    LP+ L+E Q 
Sbjct: 59  LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+   L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG
Sbjct: 119 ERLLQAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y     P+ LN      LF   R + +    F   I+     
Sbjct: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHPSI 321
           ++ Q HP  
Sbjct: 290 LHQQHHPRA 298


>gi|121728305|ref|ZP_01681336.1| tyrosine recombinase XerC [Vibrio cholerae V52]
 gi|153214849|ref|ZP_01949657.1| tyrosine recombinase XerC [Vibrio cholerae 1587]
 gi|153826279|ref|ZP_01978946.1| tyrosine recombinase XerC [Vibrio cholerae MZO-2]
 gi|254226604|ref|ZP_04920185.1| tyrosine recombinase XerC [Vibrio cholerae V51]
 gi|254291937|ref|ZP_04962718.1| tyrosine recombinase XerC [Vibrio cholerae AM-19226]
 gi|297581831|ref|ZP_06943752.1| tyrosine recombinase XerC [Vibrio cholerae RC385]
 gi|121629435|gb|EAX61864.1| tyrosine recombinase XerC [Vibrio cholerae V52]
 gi|124115092|gb|EAY33912.1| tyrosine recombinase XerC [Vibrio cholerae 1587]
 gi|125620876|gb|EAZ49229.1| tyrosine recombinase XerC [Vibrio cholerae V51]
 gi|149739947|gb|EDM54126.1| tyrosine recombinase XerC [Vibrio cholerae MZO-2]
 gi|150422147|gb|EDN14113.1| tyrosine recombinase XerC [Vibrio cholerae AM-19226]
 gi|297533925|gb|EFH72765.1| tyrosine recombinase XerC [Vibrio cholerae RC385]
          Length = 311

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 81/328 (24%), Positives = 163/328 (49%), Gaps = 17/328 (5%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+ + L   +   L +  + +   L  E+GLS  T ++Y+        +L      ++ +
Sbjct: 1   MKNDEL-TPLPDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLV-----QVGL 54

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
               QL    +R  + + + Q +   S+   LS ++SFL +L  R     +    +   +
Sbjct: 55  THWTQLDSAWVRQLVMQGKRQGMKASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPR 114

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K  +LP+ L+  +   L++        +   +  R+ AI+ L+YG GLR++E +S+  ++
Sbjct: 115 KQRTLPKNLDVDEMAQLLEVT------DDDPLSIRDRAIMELMYGAGLRLAELVSIDVKD 168

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           +   +  +R+ GKG+K R V      ++ + ++  L    L  + +  LF    G  ++ 
Sbjct: 169 VNLSEGEIRVIGKGNKERKVWFAGQAQEWVGKWLKLRS-QLADSAETALFVSKLGTRISH 227

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              Q+ + +  +   +    + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+
Sbjct: 228 RSVQKRMAEWGQKQAVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH 287

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           ++ ++    + ++YDQ HP   +K+K +
Sbjct: 288 LDFQH----LAQVYDQAHPRARKKNKDD 311


>gi|296164601|ref|ZP_06847168.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295900020|gb|EFG79459.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 313

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 87/322 (27%), Positives = 148/322 (45%), Gaps = 19/322 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + +  L  + Q +L +L IERG++  TL SY  D R++   L+        I  + ++  
Sbjct: 1   MTTAALDTQLQGYLDHLTIERGVAANTLSSYRRDLRRYTKHLSDR-----GIHDLAKVGE 55

Query: 69  TEIRAFISKRR-------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            ++  F+   R       T  +   S  R+L  ++   ++     +        +R    
Sbjct: 56  DDVSEFLVALRRGDPDAGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTP 115

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              LP++L   Q L L++     ++ +   +  RN A+L LLY  G RISEA+ L   ++
Sbjct: 116 GRRLPKSLTIDQVLALLEGAGGDSASDG-PLTLRNRALLELLYSTGARISEAVGLDVDDV 174

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLN 239
                ++ ++GKG K R+VP+     +A+  Y      DL    +    +F  +RG  L+
Sbjct: 175 DSRARSVLLRGKGGKQRLVPVGRPAVQALDAYLVRGRPDLARRGRGTPAIFLNVRGGRLS 234

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                + ++      G+    + H LRHSFATHLL  G D+R +Q +LGH  ++TTQIYT
Sbjct: 235 RQSAWQVLQDAAERAGISSGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 294

Query: 300 NVNSKNGGDWMMEIYDQTHPSI 321
            V        + E++   HP  
Sbjct: 295 MVT----VHALREVWAGAHPRA 312


>gi|238921200|ref|YP_002934715.1| tyrosine recombinase XerD, [Edwardsiella ictaluri 93-146]
 gi|238870769|gb|ACR70480.1| tyrosine recombinase XerD, putative [Edwardsiella ictaluri 93-146]
          Length = 299

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 92/306 (30%), Positives = 149/306 (48%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L +E+ L++ TL SY  D R    +LA +        T+   ++ +++ F ++
Sbjct: 9   IEQFLDALWLEKNLAENTLASYRQDLRTLAEWLACHD------LTLLTAAHGDLQDFFAQ 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++   +YL +  +  +     + + K    LP+ L+E Q   L
Sbjct: 63  RMDGGYKASSSARLLSALRRCYQYLYRETLRGDDPSALLASPKLPQRLPKDLSEAQVDAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L        ++ R+ A+L LLY  GLR+SE + L  ++I   Q  +R+ GKG+K 
Sbjct: 123 -----LQAPSIDTPLELRDKAMLELLYATGLRVSELVGLAQEDISLRQGVVRVIGKGNKE 177

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       I  Y     P+ +N      LF   R + +    F   I+      G+
Sbjct: 178 RLVPLGEEAIYWIEYYLEYGRPWLVNGQTVAALFPSNRARQMTRQTFWHRIKHYAVLAGI 237

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 238 DGDRLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 293

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 294 QHHPRA 299


>gi|168823065|ref|ZP_02835065.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|204927994|ref|ZP_03219194.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204322316|gb|EDZ07513.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205340622|gb|EDZ27386.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320087473|emb|CBY97238.1| Tyrosine recombinase xerD [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 298

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 150/309 (48%), Gaps = 17/309 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L  L +ER L++ TL +Y  D    + +L          +T+      +++  
Sbjct: 5   LARIEQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRG------KTLATAQADDLQTL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R        S  R LS ++ F ++L + K   +     + + K    LP+ L+E Q 
Sbjct: 59  LAERVEGGYKATSSARLLSAMRRFFQHLYREKCREDDPSAQLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+   L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG
Sbjct: 119 ERLLQAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y     P+ LN      LF   R + +    F   I+     
Sbjct: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHPSI 321
           ++ Q HP  
Sbjct: 290 LHQQHHPRA 298


>gi|84393557|ref|ZP_00992311.1| tyrosine recombinase [Vibrio splendidus 12B01]
 gi|84375836|gb|EAP92729.1| tyrosine recombinase [Vibrio splendidus 12B01]
          Length = 310

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 154/314 (49%), Gaps = 16/314 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L K    + + L  E+GLS  T ++Y+         L       + ++   Q+    +R 
Sbjct: 13  LQKPLSRFYEYLRSEKGLSLHTQRNYKQQLETMAAHLVT-----LGLKDWGQVDAAWVRQ 67

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             SK   + +   S+   LS ++SF  +L  R   T +    +   +K   LP+ L+  +
Sbjct: 68  LASKGMREGMKASSIATRLSSLRSFFDFLVLRGEMTANPAKGVSAPRKQRPLPKNLDVDE 127

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D       +E   +  R+ A++ ++YG GLR++E + +  ++++  Q  +R+ GK
Sbjct: 128 VGQLLDV------NEDDPLSIRDRAMMEVMYGAGLRLAELVGINLKDVLGRQGEIRVIGK 181

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GDK R  P     ++ + ++  +   DL    +  LF    G  ++    Q+ + +  + 
Sbjct: 182 GDKERKAPFSGLAKEWVDKWLKVR-GDLASPGEKALFVSKLGTRISHRSVQKRMEEWGKK 240

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ ++    + + 
Sbjct: 241 QSVASHISPHKLRHSFATHVLESSQNLRAVQELLGHENISTTQIYTHLDFQH----LAQA 296

Query: 314 YDQTHPSITQKDKK 327
           YDQ HP   +K+K 
Sbjct: 297 YDQAHPRARKKNKD 310


>gi|323500158|ref|ZP_08105103.1| site-specific tyrosine recombinase XerC [Vibrio sinaloensis DSM
           21326]
 gi|323314787|gb|EGA67853.1| site-specific tyrosine recombinase XerC [Vibrio sinaloensis DSM
           21326]
          Length = 310

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 83/328 (25%), Positives = 158/328 (48%), Gaps = 18/328 (5%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M  + +P  +   L +    + + L  E+GLS  T ++Y+         L      ++ +
Sbjct: 1   MSESAIP--LPNGLQQPLDRFYEYLRSEKGLSLHTQRNYKQQLETMAQHLV-----QLGL 53

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           +   Q+    +R   SK     +   SL   LS ++SF  +L  R   + +    +   +
Sbjct: 54  KDWSQVDSAWVRQLASKGMRDGMKASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPR 113

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K   LP+ L+  +   L++       +E   +  R+ A++ ++YG GLR++E +S+  ++
Sbjct: 114 KKRPLPKNLDVDEVGQLLEV------NEDDPLSVRDRAMMEMMYGAGLRLAELVSINVRD 167

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           +      +R+ GKGDK R VP      + + ++  +     N + Q  LF    G  ++ 
Sbjct: 168 VSFTSGEIRVVGKGDKERKVPFSGMAAEWVNKWLKVRASLANSDEQ-ALFVSKLGVRISH 226

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              Q+ + +  +   +    + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+
Sbjct: 227 RNVQKRMAEWGQKQAVASHISPHKLRHSFATHVLESSNNLRAVQELLGHENISTTQIYTH 286

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           ++ ++    + E+YDQ HP   ++  K 
Sbjct: 287 LDFQH----LAEVYDQAHPRARKRGNKE 310


>gi|290476402|ref|YP_003469307.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004]
 gi|289175740|emb|CBJ82543.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004]
          Length = 318

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 156/305 (51%), Gaps = 17/305 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + +E+ L++ TL SY  D +    +L +   + +++++I      E++ F+++
Sbjct: 28  IEQFLDTIWLEKDLAENTLSSYRLDLQALNNWLVYSGHDLLSVESI------ELQLFLAE 81

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++   +YL + K+  +     +   K    LP+ L+EKQ    
Sbjct: 82  RVDSGYKASSSARLLSAMRRLFQYLYREKMRLDDPTALLSAPKLPKRLPKDLSEKQV--- 138

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               LL+T    + I+ R+ A+L +LY CGLR+SE + LT  ++   Q  +R+ GKG+K 
Sbjct: 139 --GDLLNTPLTDQPIELRDKAMLEVLYACGLRVSELVGLTLSDMSLRQGVVRVVGKGNKE 196

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       + +Y     P+ LN +     F   RG  +    F   I+      G+
Sbjct: 197 RLVPLGEEALYWLEKYLEYGRPWLLNGSASDVFFPSKRGTQMTRQTFWHRIKHYAVLSGI 256

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT V ++     +  ++ 
Sbjct: 257 DTERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTYVATER----LKMLHQ 312

Query: 316 QTHPS 320
           Q HP 
Sbjct: 313 QHHPR 317


>gi|271502380|ref|YP_003335406.1| tyrosine recombinase XerC [Dickeya dadantii Ech586]
 gi|270345935|gb|ACZ78700.1| tyrosine recombinase XerC [Dickeya dadantii Ech586]
          Length = 302

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 146/314 (46%), Gaps = 17/314 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
               L      +L+ L +ER LS LT +SY    +  +  L+        +     L   
Sbjct: 3   PDSPLSAPADAFLRYLRVERQLSPLTQRSYAHQLQVIIEMLSAS-----GVTDWSSLDAA 57

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +RA +++ +   +   SL + LS ++SFL +L  R     +    +   K    LP+ +
Sbjct: 58  GVRAVVARSKRDGLNAASLAQRLSALRSFLDWLVGRGELKANPARGVPAPKAGRHLPKNM 117

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  +   L+D  L         +  R+ A+L ++YG GLR++E + L   ++  +   + 
Sbjct: 118 DVDEMDRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLAELVGLDCGHVNLESGEIW 171

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG K R +P+  +    +  +  +   D+       +F    G+ ++    Q+   +
Sbjct: 172 VMGKGSKERKLPVGATAVTWLTHWLAIR--DIYAPEDDAVFVSSLGRRISMRNVQKRFAE 229

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+      H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++    
Sbjct: 230 WGVKQGVNSHVHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH---- 285

Query: 310 MMEIYDQTHPSITQ 323
           +  +YD  HP   +
Sbjct: 286 LASVYDAAHPRAKR 299


>gi|187734784|ref|YP_001876896.1| tyrosine recombinase XerC [Akkermansia muciniphila ATCC BAA-835]
 gi|187424836|gb|ACD04115.1| tyrosine recombinase XerC [Akkermansia muciniphila ATCC BAA-835]
          Length = 300

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 87/309 (28%), Positives = 151/309 (48%), Gaps = 16/309 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+  Q++LQ LE+E+  S  T++ Y    RQF  + A       +       +  ++R +
Sbjct: 6   LEPEQDFLQYLEVEKQASPHTVEVYARALRQFRAWAAD------SFPGWENCTPDQMRDW 59

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + +    +    S++   + ++SF +++ +R     + +  +   ++  +LP  L   Q 
Sbjct: 60  LFQELKDEAATSSIRLRFAALRSFYRFMMRRHGLETNPMTGVSLPRRKKTLPVFLTLNQM 119

Query: 135 LTLVDNVLLHT--SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           L L++        ++   W+  R++AIL L Y CG+R+SE + L   ++      +++ G
Sbjct: 120 LELLELPYKTAVPANAPAWLPYRDAAILELFYSCGMRLSELVGLDVGSVDHRFRGVKVMG 179

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K RI+P+      A+  Y  +     N     PLF    G  L+    Q  + +  +
Sbjct: 180 KGRKERILPVGTPALAALETYVSMACLPKNS----PLFVSRIGTRLSARSVQMMLNKYVK 235

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +P + + H +RH+FATH+L  G DLRS+Q +LGH  LSTTQIYT+V        M E
Sbjct: 236 LSSIPFTISPHKIRHTFATHILEAGADLRSVQELLGHASLSTTQIYTHVTRAR----MAE 291

Query: 313 IYDQTHPSI 321
           +Y Q HP  
Sbjct: 292 VYRQAHPRA 300


>gi|113969139|ref|YP_732932.1| tyrosine recombinase XerD [Shewanella sp. MR-4]
 gi|113883823|gb|ABI37875.1| tyrosine recombinase XerD [Shewanella sp. MR-4]
          Length = 300

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 97/304 (31%), Positives = 148/304 (48%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L +L   +GLS  TL +Y  D R F  +        I      ++   ++RA+++ 
Sbjct: 11  IDAFLDDLWSSKGLSDNTLSAYRTDLRHFDRYQQSQGLRLI------EVVQADVRAYLAY 64

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  Q+    S  R LS ++ F  YL + K      +  + + K S  LP +L+E Q   L
Sbjct: 65  RVEQQFARTSSARLLSSLRRFYTYLLQTKQIAGDPMALIESPKLSRQLPDSLSESQVDRL 124

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L   +    ++ R+ A+L LLY  GLR+SE + LT + +   Q  +RI GKG K 
Sbjct: 125 -----LAEPNVDDPVECRDKAMLELLYATGLRVSELVGLTLEQMSLRQGLVRIVGKGGKE 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  Y      +L  N+Q   +F   R + +    F   I+      G+
Sbjct: 180 RLVPMGELAITEVERYLSSARHELLGNVQSDVVFPSKRSQMMTRQTFWHRIKLYASRAGI 239

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ Q
Sbjct: 240 ETELSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHV----ARARLQELHQQ 295

Query: 317 THPS 320
            HP 
Sbjct: 296 HHPR 299


>gi|300722127|ref|YP_003711410.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC
           19061]
 gi|297628627|emb|CBJ89205.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC
           19061]
          Length = 323

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 95/305 (31%), Positives = 155/305 (50%), Gaps = 17/305 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + +E+ L++ TL SY  D +    +L  Y  + + +Q I      E+++F+++
Sbjct: 33  IEQFLDTIWLEKDLAENTLASYRLDLQALDNWLMNYGHDVLLVQVI------ELQSFLAE 86

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++   +YL + K+  +     +   K    LP+ L+EKQ   L
Sbjct: 87  RVDGGYKASSSARLLSAMRRLFQYLYREKMREDDPTALLSAPKLPKRLPKDLSEKQVEDL 146

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L+T    + I+ R+ A+L +LY CGLR+SE + LT  ++   Q  +R+ GKG+K 
Sbjct: 147 -----LNTPLTDQPIELRDKAMLEVLYACGLRVSELVGLTLSDVSLRQGVVRVVGKGNKE 201

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       + +Y     P+ LN  +    F   RG  +    F   I+       +
Sbjct: 202 RLVPLGEEAVYWLEKYLEYGRPWLLNGAVSDVFFPSKRGTQMTRQTFWHRIKHYAILAEI 261

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  ++ 
Sbjct: 262 DAERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKVLHQ 317

Query: 316 QTHPS 320
           Q HP 
Sbjct: 318 QHHPR 322


>gi|154686030|ref|YP_001421191.1| site-specific tyrosine recombinase XerC [Bacillus amyloliquefaciens
           FZB42]
 gi|154351881|gb|ABS73960.1| CodV [Bacillus amyloliquefaciens FZB42]
          Length = 305

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 88/308 (28%), Positives = 155/308 (50%), Gaps = 17/308 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +++ L+IE+  S+ T+ +Y     +F +FL         I  +++ +Y ++R F+++   
Sbjct: 12  FVEYLQIEKNYSQYTIVNYVNSIEEFGMFL-----HAQNINGMKEAAYHDVRIFLTEAYE 66

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  +++ + +S ++SF K+L + K+  E+    +   K+   +P+ L EK+   L   
Sbjct: 67  KGLSRKTISKKISALRSFYKFLMREKLVEENPFQLVHLPKQEKRIPKFLYEKELEELF-- 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                S  ++    R+ A+L LLY  G+R+SE  +LT  ++     T+ + GKG K R +
Sbjct: 125 ---AVSDRSQPSGMRDQALLELLYATGMRVSECCTLTVGDLDLFMDTVLVHGKGKKQRYI 181

Query: 201 PLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           P     R A+  Y +    C  +        LF   RG PL     +  +  L +     
Sbjct: 182 PFGSYARDALELYINSGRQCLLEKAKEPHDVLFVNQRGGPLTARGIRYILSGLVKKASGT 241

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           L    H LRH+FATHLL+ G DLRS+Q +LGH  LS+TQIYT+V+ +     +   Y   
Sbjct: 242 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKE----MLRNTYMSH 297

Query: 318 HPSITQKD 325
           HP   +++
Sbjct: 298 HPRAFKEN 305


>gi|217974605|ref|YP_002359356.1| tyrosine recombinase XerD [Shewanella baltica OS223]
 gi|217499740|gb|ACK47933.1| tyrosine recombinase XerD [Shewanella baltica OS223]
          Length = 300

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 98/301 (32%), Positives = 149/301 (49%), Gaps = 16/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L   +GLS  TL +Y  D R F  +            T+  +S  ++RA+++ R  
Sbjct: 14  FLDDLWSSKGLSDNTLSAYRTDLRHFDRYQGQQG------VTLLAVSQADVRAYLAFRVE 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     S  R LS ++ F  YL + K      +  + + K +  LP +L+E Q   L+  
Sbjct: 68  QDFARTSSARLLSSLRRFYTYLVQTKQILADPMALVESPKLTRHLPDSLSESQVDRLLSE 127

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                 +    ++ R+ A+L LLY  GLR+SE + LT + +   Q  +RI GKG K R+V
Sbjct: 128 -----PNVEDAVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLV 182

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           PL       +  Y      +L  N Q   +F   RG+ +    F   I+      G+  +
Sbjct: 183 PLGELAITEVENYMKFARQELLGNKQSDVVFPSKRGQMMTRQTFWHRIKLYALRAGIETA 242

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ Q HP
Sbjct: 243 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHV----ARARLQELHQQHHP 298

Query: 320 S 320
            
Sbjct: 299 R 299


>gi|322421383|ref|YP_004200606.1| tyrosine recombinase XerC [Geobacter sp. M18]
 gi|320127770|gb|ADW15330.1| tyrosine recombinase XerC [Geobacter sp. M18]
          Length = 292

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 97/309 (31%), Positives = 145/309 (46%), Gaps = 18/309 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +  + +   LE ER +S  TL +Y  D  QF   L+ + E         Q+ +  IR 
Sbjct: 1   MKRAIEQFCSYLETERNVSPHTLAAYRSDLEQFASSLSRHGEPL-----PEQVDHLAIRR 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++++   +     S+ R LS I++  ++L +     ++    +   KK   LP  LN  Q
Sbjct: 56  YLAQLH-KGHAKSSIGRKLSAIRALFRFLLREGRLEKNPAELVSTPKKEKRLPFHLNIDQ 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              LV+            +  R+ A+L  LY CG+R+SE   +   ++   Q+  R+ GK
Sbjct: 115 VSALVE-----APAGAAGLPLRDRAVLETLYSCGIRVSELTGMNVGDLDLHQALARVMGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K RIVP+    RKA+  Y +      +     PL    RG  L      R + +    
Sbjct: 170 GGKERIVPVGSFARKALSAYLEERG---DPPPCDPLILNSRGGRLTRRSVARIVDRHMLM 226

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +      + HTLRH+FATHLL  G DLR IQ +LGH  LSTTQ YT V+     D +ME+
Sbjct: 227 IAAMRKVSPHTLRHTFATHLLEGGADLRCIQELLGHASLSTTQKYTQVS----IDRLMEV 282

Query: 314 YDQTHPSIT 322
           YDQ HP   
Sbjct: 283 YDQAHPKAR 291


>gi|256827378|ref|YP_003151337.1| tyrosine recombinase XerD [Cryptobacterium curtum DSM 15641]
 gi|256583521|gb|ACU94655.1| tyrosine recombinase XerD [Cryptobacterium curtum DSM 15641]
          Length = 302

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 102/309 (33%), Positives = 155/309 (50%), Gaps = 14/309 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L +ERG +  T+++YE D  +++ FLA        I +   ++   I AF S 
Sbjct: 5   VREFLSYLRVERGAATSTVRAYEHDLTRYVEFLASLQPAGTAI-SWSHITRDNIVAFESS 63

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            + Q +   S  R+LS IKSF ++L+     +++    +   KK   LP  L+      L
Sbjct: 64  LKDQGLALTSRARALSSIKSFHRFLEVDGRCSKNPASLISLPKKPQRLPDVLSIDTVGRL 123

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D+ +       + +D R+ A+L +LYGCGLR SE   L    +  D   L ++GKGDK 
Sbjct: 124 LDSSI-----GDRPVDLRDRALLEVLYGCGLRASELCGLDVDRVNTDDGVLLVRGKGDKE 178

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           RIVPL  +  KA+ +Y +     L    +   + +F   RG  L      R +R     +
Sbjct: 179 RIVPLAGTAEKALCDYLEHGRPVLARAGRTSTMAVFLNARGSRLTRQSVHRIVRNAGLRV 238

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+  +   HTLRHS ATHLL  G DLR IQ +LGH  ++TTQIYT+V   +    + E Y
Sbjct: 239 GID-NLHPHTLRHSCATHLLEGGADLRIIQDMLGHSDIATTQIYTHVQQTH----LQEEY 293

Query: 315 DQTHPSITQ 323
              HP   +
Sbjct: 294 RSAHPRARR 302


>gi|206900840|ref|YP_002251182.1| tyrosine recombinase XerD [Dictyoglomus thermophilum H-6-12]
 gi|206739943|gb|ACI19001.1| tyrosine recombinase XerD [Dictyoglomus thermophilum H-6-12]
          Length = 296

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 94/313 (30%), Positives = 158/313 (50%), Gaps = 17/313 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + +++L  L+ E+ +S  T+ SY  D   F+ FL    +E I I+ ++     E + 
Sbjct: 1   MKDKLEDFLFYLKFEKNMSSATIDSYRRDLEDFINFLQ---KEGINIKNLK---REEWQR 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++     +K   +S+ R +S I+SF+K+L +     ++    M   K    LP  L+ K+
Sbjct: 55  YLVALY-KKYKIKSIARKISSIRSFIKFLLREGYINKNYSNFMLIPKIPMYLPEVLDPKE 113

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
             + +             +  RN AIL   Y  G+R+SE ++L  QN+  ++  +R  GK
Sbjct: 114 IESFL-----KIPDPLSPLGIRNMAILETFYATGIRVSELVNLNIQNVDLEEKYVRCFGK 168

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K RIVPL     +++  Y  +     N   +  LF   +G+ +        I+   + 
Sbjct: 169 GEKERIVPLGDYAVESLKRYLSVRHL-FNPKDKEALFLNKKGERITRQGVWFIIKAYSKI 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           LGLP   + HT RHSFATHLLSNG D+R +Q +LGH  ++TTQIYT++        + E+
Sbjct: 228 LGLPKKVSPHTFRHSFATHLLSNGADIRIVQELLGHSDIATTQIYTHI----VSSKLHEV 283

Query: 314 YDQTHPSITQKDK 326
           Y + HP + +  K
Sbjct: 284 YQRAHPLMRRNTK 296


>gi|160892553|ref|ZP_02073343.1| hypothetical protein CLOL250_00082 [Clostridium sp. L2-50]
 gi|156865594|gb|EDO59025.1| hypothetical protein CLOL250_00082 [Clostridium sp. L2-50]
          Length = 292

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + ++  L+  +  S+ T+ SY  D  +F  F       +   + IR ++ T I  +I  
Sbjct: 5   IEKYVDYLKNIKKSSENTVASYRRDLVKFSDFY-----RENGTEDIRSINETNINTYILY 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    ++ RS++ IKSF  +L + KI  +   +N++  K    +P  L  ++   L
Sbjct: 60  LEKNGKSMATVSRSIASIKSFFGFLFREKILMDDPSVNIKPPKIEKKMPDILTIEEVNRL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D        +    + R+ A+L LLY  G+R+SE ++L   ++      +         
Sbjct: 120 LDQ-----PGDQSPKEIRDRAMLELLYATGIRVSELVTLKITDVNLKMGYIECHDLRKS- 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RI+P+  S ++A+  Y      D+  N +  LF   +G P+    F + I+      G+ 
Sbjct: 174 RIIPIEDSAQRALDNYISNVRGDMCKNSE-YLFSNCKGTPMTRQGFWKIIKVYADKAGID 232

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T H +RHSFA+HL++NG DL+++Q +LGH  +STTQIY N    +    + E Y + 
Sbjct: 233 KDITPHMIRHSFASHLVNNGADLKAVQEMLGHADISTTQIYLN----SKQSRLKEEYQKA 288

Query: 318 HPSI 321
           HP  
Sbjct: 289 HPRA 292


>gi|237785449|ref|YP_002906154.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758361|gb|ACR17611.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 326

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 89/309 (28%), Positives = 147/309 (47%), Gaps = 19/309 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            ++ +L +E+  S  TL +Y+ D  +++ +L  +         I  +   +I  FI+  R
Sbjct: 30  AYIDHLAVEKNASPNTLSNYQRDLNKYVAWLDQHD------LNIDSVDEPDIEQFIADLR 83

Query: 80  TQK-------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
                     +   S  R+   ++S  ++  +           +  L+   SLP AL  +
Sbjct: 84  RGDSTLGWSPLAASSAARATVAVRSLHRFSHEEGQLARDVAAGVTVLRSGQSLPHALTVE 143

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q   L++   ++ S  +  I  R+ A++ LLYG G+RISEAL+L   +I  + + +R+ G
Sbjct: 144 QVNRLIEACPVNES--SNPIALRDRAVIELLYGTGMRISEALNLDIDSIDRNHAYVRVVG 201

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R+VP+      AI  +       +       LF   RG  L      +++     
Sbjct: 202 KGRKERLVPIGAPALHAIDAWLVRGRPSMVKRSDKALFLNARGNRLGRQSVWKFLHAAAE 261

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL  S   HTLRHS+ATHLL  G D+R++Q +LGH  ++TTQIYT V+     D + E
Sbjct: 262 RCGLGDSVGPHTLRHSYATHLLQGGADIRAVQELLGHASVTTTQIYTAVS----IDNLRE 317

Query: 313 IYDQTHPSI 321
           +Y  +HP  
Sbjct: 318 VYATSHPRA 326


>gi|332086819|gb|EGI91955.1| tyrosine recombinase XerD [Shigella boydii 5216-82]
          Length = 298

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 150/309 (48%), Gaps = 17/309 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L  L +E+ L++ TL +Y  D    + +L           T+      +++A 
Sbjct: 5   LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG------VTLATAQSDDLQAL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R        S  R LS ++   +YL + K   +    ++ + K    LP+ L+E Q 
Sbjct: 59  LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+   L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG
Sbjct: 119 ERLLQAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y     P+ LN      LF   R + +    F   I+     
Sbjct: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHPSI 321
           ++ Q HP  
Sbjct: 290 LHQQHHPRA 298


>gi|229520080|ref|ZP_04409508.1| tyrosine recombinase XerC [Vibrio cholerae TM 11079-80]
 gi|229342868|gb|EEO07858.1| tyrosine recombinase XerC [Vibrio cholerae TM 11079-80]
          Length = 311

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 80/328 (24%), Positives = 163/328 (49%), Gaps = 17/328 (5%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+ + +   +   L +  + +   L  E+GLS  T ++Y+        +L      ++ +
Sbjct: 1   MKNDEV-TPLPDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLV-----QVGL 54

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
               QL    +R  + + + Q +   S+   LS ++SFL +L  R     +    +   +
Sbjct: 55  THWTQLDSAWVRQLVMQGKRQGMKASSIATRLSSLRSFLDFLILRGELEANPAKGVSAPR 114

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K  +LP+ L+  +   L++        +   +  R+ AI+ L+YG GLR++E +S+  ++
Sbjct: 115 KQRTLPKNLDVDEMAQLLEVT------DDDPLSIRDRAIMELMYGAGLRLAELVSIDVKD 168

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           +   +  +R+ GKG+K R V      ++ + ++  L    L  + +  LF    G  ++ 
Sbjct: 169 VNLSEGEIRVIGKGNKERKVWFAGQAQEWVGKWLKLRS-QLADSAETALFVSKLGTRISH 227

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              Q+ + +  +   +    + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+
Sbjct: 228 RSVQKRMAEWGQKQAVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH 287

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           ++ ++    + ++YDQ HP   +K+K +
Sbjct: 288 LDFQH----LAQVYDQAHPRARKKNKDD 311


>gi|258593730|emb|CBE70071.1| Tyrosine recombinase xerD [NC10 bacterium 'Dutch sediment']
          Length = 295

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 152/305 (49%), Gaps = 15/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L+ L +E+GL++ +L +Y  D R+ + +      ++  + + R++S  ++   +  
Sbjct: 5   IEDYLRYLAVEKGLAENSLAAYGRDLRRIVGYF-----KQGGVGSFREVSRGQVARLLLT 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R   +  R++ R  S ++   +YL  +    E    ++ +      LP  L++++   L
Sbjct: 60  LREAGLAPRTVSRHTSSLRGLYRYLLTQDHVKEDPTAHLESSSPWVRLPGVLSQEEVERL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +          +  +  R+ A+L LLY  GLR+SE ++L    +  +   +  QGKG K 
Sbjct: 120 L-----AAPLTSNPLGLRDKAMLELLYAAGLRVSEMVTLRLSEVDLEVGYVHCQGKGGKD 174

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL    + A+  Y +   P+         LF    G PL    F + +R      G+
Sbjct: 175 RVVPLGRDAQTAVRRYLETSRPYLQRGWSSSTLFLNRFGYPLTRQGFWKLLRAYAIAAGI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               T HTLRHSFATHLL  G DLR++Q +LGH  +STTQIYT+V+  +    +  +Y++
Sbjct: 235 DRRVTPHTLRHSFATHLLERGADLRAVQMMLGHADISTTQIYTHVSRAH----LKTVYNR 290

Query: 317 THPSI 321
            HP  
Sbjct: 291 YHPRA 295


>gi|21241407|ref|NP_640989.1| site-specific tyrosine recombinase XerC [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|34222918|sp|Q8PPP9|XERC_XANAC RecName: Full=Tyrosine recombinase xerC
 gi|21106742|gb|AAM35525.1| site-specific recombinase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 305

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 87/316 (27%), Positives = 153/316 (48%), Gaps = 19/316 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT-----EEKITIQTIRQLSYT 69
           +     +L  L++ER +S  TL +Y  D    +++ +        ++        Q    
Sbjct: 1   MSSVDEFLTYLQVERQVSAHTLDAYRRDLAALVVWASEQKTDDGVQDAAVPAETAQFDSA 60

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R F++    + +  +SL+R LS  +S+  +L KR   + S    +R  K    LP+ L
Sbjct: 61  HLRQFVAAEHRRGLSAKSLQRRLSACRSYYAWLLKRGRISASPAAALRAPKAPRKLPQVL 120

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  +A+ LV+            +  R+ A+L + Y  GLR+SE  +L  +++  D   + 
Sbjct: 121 DADEAVRLVEVP------TDAPLGLRDRALLEVFYSSGLRLSELCALRWRDLDLDSGLVM 174

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG K R+VP+      A+ E+      D   +    +F G  G  ++    Q  I+Q
Sbjct: 175 VLGKGSKQRLVPVGSHAIAALREWR----RDSGASADSHVFPGRAGGAISQRAVQIRIKQ 230

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           L    G+      H LRHSFA+H+L + GDLR +Q +LGH  ++TTQIYT+++ ++    
Sbjct: 231 LAVRQGMFKDVHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQH---- 286

Query: 310 MMEIYDQTHPSITQKD 325
           + ++YD  HP   +K 
Sbjct: 287 LAKVYDAAHPRARRKK 302


>gi|37678273|ref|NP_932882.1| site-specific tyrosine recombinase XerC [Vibrio vulnificus YJ016]
 gi|37197012|dbj|BAC92853.1| site-specific recombinase XerC [Vibrio vulnificus YJ016]
          Length = 322

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 81/315 (25%), Positives = 152/315 (48%), Gaps = 16/315 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L K    + + L  E+GLS  T ++Y+         L       + ++   Q+    +R 
Sbjct: 19  LRKPLDQFYEYLRAEKGLSLHTQRNYKQQLETMAEHL-----HSMGLKAWPQVDAGWVRQ 73

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
              K   + +   S+   LS ++SF  +L  R I T +    +   +K   LP+ L+  +
Sbjct: 74  LAGKGMREGMKASSIATRLSSLRSFFDFLILRGILTANPAKGVSAPRKKRPLPKNLDVDE 133

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++       +E   +  R+ AI+ L+YG GLR++E + +  +++      +R+ GK
Sbjct: 134 VNQLLEV------NEDDPLAIRDRAIMELMYGAGLRLAELVDIDVRDVHLRSGEIRVIGK 187

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R VP      + + ++  +    L    +  LF    G  ++    Q+ + +  + 
Sbjct: 188 GNKERKVPFAGMAVEWVGKWLKVRSG-LADPSEPALFVSKLGTRISHRSVQKRMAEWGQK 246

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    T H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ ++    + ++
Sbjct: 247 QAVASHITPHKLRHSFATHILESSNNLRAVQELLGHENISTTQIYTHLDFQH----LADV 302

Query: 314 YDQTHPSITQKDKKN 328
           YDQ HP   +K  ++
Sbjct: 303 YDQAHPRARKKSSQH 317


>gi|254468110|ref|ZP_05081516.1| tyrosine recombinase XerD [beta proteobacterium KB13]
 gi|207086920|gb|EDZ64203.1| tyrosine recombinase XerD [beta proteobacterium KB13]
          Length = 298

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 99/312 (31%), Positives = 160/312 (51%), Gaps = 19/312 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            S EL      ++ +L +E GLSK TL SY  D +Q  I+ +         + I  ++ +
Sbjct: 4   ASKELPLIVDQFINSLWLEDGLSKNTLDSYRYDLKQLAIWYSN--------RDIAHITKS 55

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           EI+ +++ R       RS+ R L+ ++ F +YL +  I  E   L +   K S +LP++L
Sbjct: 56  EIQEYLAYRFPLSKS-RSIARLLACLRRFYRYLVRENIIHEDPTLMIEAPKPSKALPKSL 114

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           NE +   L     L+  + +     R+ A+L LLY CGLR+SE +++    +  +   +R
Sbjct: 115 NENEVEKL-----LNAPNISDDQGLRDRAMLELLYACGLRVSELITIMVTEVSLNDGVIR 169

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           I GKGDK R+VP+       I +Y        L       LF  +RG  +    F   I+
Sbjct: 170 ITGKGDKTRLVPMGEEASHWIEQYLKSSRDNLLKEKKSKYLFVTLRGAAMTRQAFWYLIK 229

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     G+  + + H LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +    
Sbjct: 230 RYAVASGIKHAISPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARER--- 286

Query: 309 WMMEIYDQTHPS 320
            + +++ + HP 
Sbjct: 287 -LKDLHQKHHPR 297


>gi|153803069|ref|ZP_01957655.1| tyrosine recombinase XerC [Vibrio cholerae MZO-3]
 gi|124121388|gb|EAY40131.1| tyrosine recombinase XerC [Vibrio cholerae MZO-3]
          Length = 312

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 81/328 (24%), Positives = 163/328 (49%), Gaps = 17/328 (5%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+ + L   +   L +  + +   L  E+GLS  T ++Y+        +L      ++ +
Sbjct: 1   MKNDEL-TPLPDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLV-----QVGL 54

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
               QL    +R  + + + Q +   S+   LS ++SFL +L  R     +    +   +
Sbjct: 55  THWTQLDSAWVRQLVMQGKRQGMKASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPR 114

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K  +LP+ L+  +   L++        +   +  R+ AI+ L+YG GLR++E +S+  ++
Sbjct: 115 KQRTLPKNLDVDEMAQLLEVT------DDDPLSIRDRAIMELMYGAGLRLAELVSIDVKD 168

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           +   +  +R+ GKG+K R V      ++ + ++  L    L  + +  LF    G  ++ 
Sbjct: 169 VNLSEGEIRVIGKGNKERKVWFAGQAQEWVGKWLKLRS-QLADSAETALFVSKLGTRISH 227

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              Q+ + +  +   +    + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+
Sbjct: 228 RSVQKRMAEWGQKQAVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH 287

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           ++ ++    + ++YDQ HP   +K+ K+
Sbjct: 288 LDFQH----LAKVYDQAHPRARKKNNKD 311


>gi|220912288|ref|YP_002487597.1| tyrosine recombinase XerD [Arthrobacter chlorophenolicus A6]
 gi|219859166|gb|ACL39508.1| tyrosine recombinase XerD [Arthrobacter chlorophenolicus A6]
          Length = 362

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 81/316 (25%), Positives = 136/316 (43%), Gaps = 28/316 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++LQ++ +ERGL+  TL +Y  D  ++  +LA    ++        ++   +  F+    
Sbjct: 59  DYLQHMGVERGLAANTLAAYRRDLARYSRYLAGTGCQQPG-----DITRHHVTGFVRALS 113

Query: 80  TQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
                   +G RS  R++  ++   K+      T       +        LP+A+   + 
Sbjct: 114 DGSDGGTALGVRSAARTVVAVRGLHKFWALEGHTASDPASEVHPPMAGKRLPKAITVDEV 173

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-----IMDDQS--T 187
             +++      +        R+ A+L  LY  G RISEA+ L   +        +Q    
Sbjct: 174 TRILE-----AAGTDTATGLRDRALLEFLYSTGARISEAVGLDVDDISLAGDDTEQGPAI 228

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQR 245
           +R+ GKG K R+VPL     +A+  Y       L    +    LF   RG  ++      
Sbjct: 229 VRLFGKGSKERLVPLGSYGARALEAYLVRGRPLLAAKGKGTPALFLNARGGRISRQSAWT 288

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            ++       +    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQ+YT V    
Sbjct: 289 ILKVAAEKANITRDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVT--- 345

Query: 306 GGDWMMEIYDQTHPSI 321
             D + E+Y   HP  
Sbjct: 346 -ADTLREVYAAAHPRA 360


>gi|51594547|ref|YP_068738.1| site-specific tyrosine recombinase XerC [Yersinia
           pseudotuberculosis IP 32953]
 gi|186893547|ref|YP_001870659.1| site-specific tyrosine recombinase XerC [Yersinia
           pseudotuberculosis PB1/+]
 gi|51587829|emb|CAH19432.1| putative integrase/recombinase [Yersinia pseudotuberculosis IP
           32953]
 gi|186696573|gb|ACC87202.1| tyrosine recombinase XerC [Yersinia pseudotuberculosis PB1/+]
          Length = 303

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 83/313 (26%), Positives = 150/313 (47%), Gaps = 17/313 (5%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           S  L  + + +L+ L IER LS LT+ SY       +        E++ +   + L   +
Sbjct: 5   SASLAPQVEAFLRYLSIERQLSPLTVTSYRRQLSALMEI-----GEQMGLAHWQTLDAAQ 59

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +R+ +S+ +   +   SL   LS ++SFL +L  + +   +    +   +    LP+ ++
Sbjct: 60  VRSLVSRSKRTGLHASSLALRLSALRSFLNWLVSQGVLPANPAKGVSTPRSGRHLPKNID 119

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             +   L+   L         +  R+ A+L ++YG GLR+SE + +  +++      + +
Sbjct: 120 VDEINKLLSIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGMNCKHVDLASGDVWV 173

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG K R VPL  +    +  +  L   +L       +F    GK ++    Q+   + 
Sbjct: 174 MGKGSKERKVPLGKTAVTWLQHWLALR--ELFEPQDDAIFLANTGKRISARNVQKRFAEW 231

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+      H LRHSFATH+L + GDLR++Q +LGH  L+TTQIYT+++ ++    +
Sbjct: 232 GVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----L 287

Query: 311 MEIYDQTHPSITQ 323
             +YD  HP   +
Sbjct: 288 ATVYDAAHPRAKR 300


>gi|110644136|ref|YP_671866.1| site-specific tyrosine recombinase XerC [Escherichia coli 536]
 gi|123048654|sp|Q0TAR4|XERC_ECOL5 RecName: Full=Tyrosine recombinase xerC
 gi|110345728|gb|ABG71965.1| integrase/recombinase XerC [Escherichia coli 536]
          Length = 298

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 88/311 (28%), Positives = 152/311 (48%), Gaps = 17/311 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+      + F +     +  +Q+ +Q   T +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIIHFAS-----ENGLQSWQQCDVTMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G   L   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAAGLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DMSRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+  +    I  + DL   DL  +    LF    GK ++    Q+   +   
Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHPSITQ 323
           +YD  HP   +
Sbjct: 286 VYDAAHPRAKR 296


>gi|254427826|ref|ZP_05041533.1| tyrosine recombinase XerC [Alcanivorax sp. DG881]
 gi|196193995|gb|EDX88954.1| tyrosine recombinase XerC [Alcanivorax sp. DG881]
          Length = 307

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 163/309 (52%), Gaps = 16/309 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L +L  ER LS  T+ SY+ D  +          + +  Q    L+  +IR+  +   
Sbjct: 14  AFLTHLASERRLSPHTVSSYQRDLVE--------ARKVLGTQPWDTLTVHDIRSLAATLH 65

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +    ++++R LS +++F +YL +  +  ++  +++R  K    LP+AL+  Q   L+D
Sbjct: 66  RKGKSGKTIQRMLSTLRTFFRYLMREGLARDNPAMDIRAPKSGKRLPKALDADQVSHLLD 125

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                 +H ++ +  R+ A++ LLY CGLR++E LSL   +I      L + GKG+K R 
Sbjct: 126 ----AGTHSSEPLALRDQAMMELLYACGLRLAELLSLNLDSIDLRDGQLLVTGKGNKTRQ 181

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +P+      A+  +  + P  +    Q  LF    G+ L+P   Q+ +++     GL   
Sbjct: 182 LPVGKPALTAVRRWLKVRPLLIKSGEQTALFISKNGRRLSPSSVQQRLKRHALERGLDDH 241

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRHSFATHLL + GDLR++Q +LGH  L+TTQ+YT+++ ++    + ++YD  HP
Sbjct: 242 LHPHKLRHSFATHLLESSGDLRAVQELLGHADLATTQVYTHLDFQH----LAQVYDGAHP 297

Query: 320 SITQKDKKN 328
              ++  ++
Sbjct: 298 RAQRRKDED 306


>gi|301154937|emb|CBW14400.1| site-specific tyrosine recombinase [Haemophilus parainfluenzae
           T3T1]
          Length = 297

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 92/302 (30%), Positives = 156/302 (51%), Gaps = 17/302 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L    IE+GLS+ T+QSY  D      +L    ++ ++++T+  L   +++ F+  R  
Sbjct: 10  FLNEYWIEKGLSENTVQSYRLDLTALCDWL---DKQNLSLETLEPL---DLQQFLGSRLE 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     S  R LS ++   +YL + K  T+     + + K  + LP+ L E+Q   L+  
Sbjct: 64  QGYKATSTARMLSAMRKLFQYLYREKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDLL-- 121

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
              +T      ++ R+ A+L LLY  GLR++E ++LT +N+   Q  +R+ GKG+K RIV
Sbjct: 122 ---NTPDVEIPLELRDKAMLELLYATGLRVTELVTLTIENMNLQQGVVRVIGKGNKERIV 178

Query: 201 PLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+       + ++     P  LN      +F   R + +    F   I+      G+   
Sbjct: 179 PMGEEAAFWVRQFVLYGRPILLNGQSSDVVFPSQRAQQMTRQTFWHRIKHYAILAGIDTD 238

Query: 260 -TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++++ H
Sbjct: 239 ALSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER----LKHLHERFH 294

Query: 319 PS 320
           P 
Sbjct: 295 PR 296


>gi|165976973|ref|YP_001652566.1| site-specific tyrosine recombinase XerD [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|303250986|ref|ZP_07337174.1| site-specific tyrosine recombinase XerD [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307253199|ref|ZP_07535075.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|165877074|gb|ABY70122.1| integrase/recombinase XerD [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|302650143|gb|EFL80311.1| site-specific tyrosine recombinase XerD [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306859343|gb|EFM91380.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
          Length = 297

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 95/309 (30%), Positives = 153/309 (49%), Gaps = 18/309 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L    + +L  L  E GLS+ T  +Y  D   F  +L        T +    L + +++A
Sbjct: 4   LDPIIEQFLDTLWQEHGLSENTSVAYRLDLESFSEWL-------PTPKAFLTLDHFDLQA 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+ +R        S  R LS ++ F ++L       +   L + + +K   LP++L+E+Q
Sbjct: 57  FLGERLELGYKATSSARMLSCLRKFFRFLYTENYRQDDPTLTLTSPRKPAHLPKSLSEEQ 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
            + L+D     + +    ++ R+ A+L LLY  GLR+SE +SL+  N+   Q  +R+ GK
Sbjct: 117 VMDLLD-----SPNTLDPVELRDKAMLELLYATGLRVSELVSLSIDNLSLRQGVVRVVGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           GDK R+VP+       I E++       LN      +F   RG+ +    F   I+    
Sbjct: 172 GDKERLVPIGEEAGYWIQEFFRYGRAILLNNLQSDVVFPSRRGQQMTRQTFWHRIKHYAV 231

Query: 253 YLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             G+     + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V        + 
Sbjct: 232 LAGIDSEKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR----LK 287

Query: 312 EIYDQTHPS 320
            ++ Q HP 
Sbjct: 288 SLHQQFHPR 296


>gi|317046395|ref|YP_004114043.1| tyrosine recombinase XerC [Pantoea sp. At-9b]
 gi|316948012|gb|ADU67487.1| tyrosine recombinase XerC [Pantoea sp. At-9b]
          Length = 302

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 83/313 (26%), Positives = 151/313 (48%), Gaps = 17/313 (5%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
              LL   + +L+ L++ER LS LT Q+Y    +  +        +++ I    QL   +
Sbjct: 4   DSPLLPAVEGFLRYLKVERQLSPLTQQNYARQLQAIITMA-----DEMKITAWTQLEPAQ 58

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +R   ++ R   +G  SL   LS ++SFL +   + + + +    +   + +  LP+ ++
Sbjct: 59  VRNIAARSRRAGLGASSLALRLSALRSFLDWQVSQDMLSGNPAKGIATPRNARHLPKNMD 118

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             +   L++  L         +  R+ A+L  +YG GLR+SE +++  +++  +   + +
Sbjct: 119 VDEVNQLLEIDL------NDPLAVRDRAMLETMYGGGLRLSELVNMDLRHLDLEAGEVWV 172

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG K R VP+  +    +  +  L            +F   RG  ++    Q+   + 
Sbjct: 173 LGKGSKERRVPIGGTAVTWLQHWLPLR--ASFAPQDDAVFVSSRGSRISARNVQKRFAEW 230

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+      H LRHSFATHLL + GDLR++Q +LGH  LSTTQIYT+++ ++    +
Sbjct: 231 GIKQGVASHIHPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----L 286

Query: 311 MEIYDQTHPSITQ 323
             +YD  HP   +
Sbjct: 287 ASVYDSAHPRAKR 299


>gi|260774849|ref|ZP_05883751.1| tyrosine recombinase XerC [Vibrio coralliilyticus ATCC BAA-450]
 gi|260609274|gb|EEX35429.1| tyrosine recombinase XerC [Vibrio coralliilyticus ATCC BAA-450]
          Length = 309

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 83/325 (25%), Positives = 156/325 (48%), Gaps = 18/325 (5%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M  + +P  +   L      + + L  E+GLS  T ++Y+         L       + +
Sbjct: 1   MSESVIP--LPNGLQSPLNRFYEYLRSEKGLSLHTQRNYKQQLETMAQHLVT-----MGL 53

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           +   Q+    +R   SK     +   SL   LS ++SF  +L  R   T +    +   +
Sbjct: 54  KDWSQVDAAWVRQLASKGMRDGMKASSLATRLSALRSFFDFLILRGELTANPAKGVSAPR 113

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K   LP+ L+  +   L++       +E   +  R+ A++ L+YG GLR++E +S+  ++
Sbjct: 114 KKRPLPKNLDVDEVGQLLEV------NEDDPLAIRDRAMMELMYGAGLRLAEMVSVDVRD 167

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           +      +R+ GKGDK R VP      + + ++  +     N + +  LF    G  ++ 
Sbjct: 168 VSLSSGEIRVVGKGDKERKVPFAGMAEEWVAKWLKVRGALANTD-EPALFVSKLGVRISH 226

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              Q+ + +  +   +    + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+
Sbjct: 227 RNVQKRMAEWGQKQSVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH 286

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKD 325
           ++ ++    + ++YDQ HP   +K+
Sbjct: 287 LDFQH----LADVYDQAHPRAKKKE 307


>gi|296104556|ref|YP_003614702.1| site-specific tyrosine recombinase XerD [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295059015|gb|ADF63753.1| site-specific tyrosine recombinase XerD [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 298

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 150/309 (48%), Gaps = 17/309 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L  L +E+ L++ TL +Y  D    + +LA          ++      +++A 
Sbjct: 5   LALIEQFLDALWLEKNLAQNTLSAYRRDLTMLVEWLAHRG------LSLESAQSDDLQAL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + +R        S  R LS ++   ++L + KI  +     + + K    LP+ L+E Q 
Sbjct: 59  LGERMEGGYKATSSARLLSAMRRLFQHLYREKIRADDPSALLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+ +  +        ++ R+ A+L LLY  GLR+SE + LT  +I   Q  +R+ GKG
Sbjct: 119 ERLLQSPAVDLP-----LELRDKAMLELLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y     P+ LN      LF   R + +    F   I+     
Sbjct: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYATL 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHPSI 321
           ++ Q HP  
Sbjct: 290 LHQQHHPRA 298


>gi|289177291|gb|ADC84537.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium animalis
           subsp. lactis BB-12]
          Length = 309

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 89/319 (27%), Positives = 155/319 (48%), Gaps = 16/319 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
            ++ EL      +L ++++ERGLS  T+Q+YE D  Q++ +L      +  I     ++ 
Sbjct: 2   AMNGELPMLEARFLAHIDVERGLSAATVQAYENDIDQYVRWLG-----EQGIAKAASITS 56

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++  F++ +        SL R L+ I  F ++++  ++  +    ++R  K + +LP  
Sbjct: 57  NDVEDFVAAQSKSGTSAVSLARRLASIHMFHRFMQSERVVADDVSQSVRPPKSAETLPEV 116

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L   +   L+D         ++ +  R+SA+L L+Y  G R+SEA+ L   ++  D   +
Sbjct: 117 LTVDEVQRLLDA--ARHDDASEAVSMRDSALLELMYATGCRVSEAVGLDFTDVDMDAQVV 174

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-----LNIQLPLFRGIRGKPLNPGVF 243
           R+ GKG K R+VP       A+  Y +    +L         +  +F   RGK L     
Sbjct: 175 RLTGKGAKQRLVPFGTYAANALRAYVEHARPELENKAKGERERSAIFLNKRGKRLTRQSV 234

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              I+       +      HTLRHSFATH+L  G D+R++Q +LGH  + TTQ+YT+V+ 
Sbjct: 235 WEIIKHAGALAHVSKPLHPHTLRHSFATHMLQGGADVRTVQELLGHASVKTTQMYTHVSQ 294

Query: 304 KNGGDWMMEIYDQTHPSIT 322
               D ++E Y  +HP   
Sbjct: 295 ----DTLIETYITSHPRAK 309


>gi|303326955|ref|ZP_07357397.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3]
 gi|302862943|gb|EFL85875.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3]
          Length = 331

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 106/310 (34%), Positives = 163/310 (52%), Gaps = 10/310 (3%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           + + +L  L +++G S  T ++Y  D  Q  +FL    E+   +    ++S   I+AF++
Sbjct: 30  QIEAFLSWLAVQKGASDATQKAYGADLTQLAVFLR---EQGADLARPGEVSRKHIQAFLA 86

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               +     S+ R L+ ++SF ++L +    +E+    +RN ++    PRALN  +   
Sbjct: 87  WLFRRGEAKSSMARKLAAVRSFFRFLLRSGRVSENVAAQVRNPRQEKHHPRALNVDETFA 146

Query: 137 LVDNVLLHTSHETK--WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           L+D        E     +  R+ A+  LLYG GLRISEALSL   +       LR+ GKG
Sbjct: 147 LLDTPKAAPPSEAHAARLLCRDLALAELLYGSGLRISEALSLDLDDAQLRSRVLRVMGKG 206

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            + R+ PL  +  +A+  +     + L L  +  LF G RG  LN     R I  L R  
Sbjct: 207 SRERLSPLSDTSCEALAAWLAERSY-LALPEEQALFVGARGARLNRREAARIIAGLCRRA 265

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           GL  + + H+LRHSFATHLL+ G DLRS+Q +LGH RL+TTQ YT V+ ++    ++  Y
Sbjct: 266 GLAFTVSPHSLRHSFATHLLAAGADLRSVQELLGHRRLTTTQRYTQVSLEH----LIRAY 321

Query: 315 DQTHPSITQK 324
           DQ HP   +K
Sbjct: 322 DQAHPRSGKK 331


>gi|227114723|ref|ZP_03828379.1| site-specific tyrosine recombinase XerC [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 311

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/325 (25%), Positives = 151/325 (46%), Gaps = 19/325 (5%)

Query: 1   MEGNNLPE--IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI 58
           M     P     S  L  +   +L+ L++ER LS LT  SY       +  L+       
Sbjct: 1   MSRQPAPSETPSSSPLQADVDAFLRYLKVERQLSPLTQTSYLRQLSAVITILSA-----A 55

Query: 59  TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
            +   R L  + +R+ +S+ +   +   SL   LS ++SFL ++  R +   +    +  
Sbjct: 56  GVADWRNLDASGVRSVVSRSKRDGLHSSSLALRLSALRSFLDWMVSRGVLVANPAKGVSA 115

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            +    LP+ ++  +   L++  L         +  R+  +L ++YG GLR++E + +  
Sbjct: 116 PRAGRPLPKNMDVDETNRLLEIDL------DDPLAVRDRTMLEVMYGAGLRLAELVGMDY 169

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           Q+I      + + GKG K R +P+  +    +  +  L   +L       +F   +G+ +
Sbjct: 170 QHIDLASGEVWVMGKGSKERKLPIGKTAVTWLERWMALR--ELFGPQDDAVFISNQGRRI 227

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +    Q+   +     G+      H LRHSFATH+L + GDLR++Q +LGH  L+TTQIY
Sbjct: 228 SMRNVQKRFAEWGIKQGINSHVHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIY 287

Query: 299 TNVNSKNGGDWMMEIYDQTHPSITQ 323
           T+++ ++    +  +YD  HP   +
Sbjct: 288 THLDFQH----LASVYDAAHPRAKR 308


>gi|323154775|gb|EFZ40973.1| tyrosine recombinase XerD [Escherichia coli EPECa14]
          Length = 298

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 150/309 (48%), Gaps = 17/309 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L  L +E+ L++ TL +Y  D    + +L           T+      +++A 
Sbjct: 5   LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLYHRG------LTLATAQSDDLQAL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R        S  R LS ++   +YL + K   +    ++ + K    LP+ L+E Q 
Sbjct: 59  LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+   L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG
Sbjct: 119 ERLLQAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y     P+ LN      LF   R + +    F   I+     
Sbjct: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHPSI 321
           ++ Q HP  
Sbjct: 290 LHQQHHPRA 298


>gi|306812204|ref|ZP_07446402.1| site-specific tyrosine recombinase XerD [Escherichia coli NC101]
 gi|305854242|gb|EFM54680.1| site-specific tyrosine recombinase XerD [Escherichia coli NC101]
          Length = 298

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 150/309 (48%), Gaps = 17/309 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L  L +E+ L++ TL +Y  D    + +L           T+      +++A 
Sbjct: 5   LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG------LTLATAQSDDLQAL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R        S  R LS ++   +YL + K   +    ++ + K    LP+ L+E Q 
Sbjct: 59  LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+   L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG
Sbjct: 119 ERLLQAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLPQGVVRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y     P+ LN      LF   R + +    F   I+     
Sbjct: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHPSI 321
           ++ Q HP  
Sbjct: 290 LHQQHHPRA 298


>gi|114566378|ref|YP_753532.1| hypothetical protein Swol_0842 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337313|gb|ABI68161.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 290

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 93/298 (31%), Positives = 155/298 (52%), Gaps = 11/298 (3%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           + +E+  S  TL SY+ D  QF  FL+           +  +S+  +R ++++ + + + 
Sbjct: 1   MRVEKSASNFTLSSYKTDLSQFFAFLSQKKGINPEEVGVELISHNSVRKYLAQMQEKGLS 60

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             ++ R L+ ++SF+K+L +  I  ++ I  +   K+   LPR L  ++   L+     +
Sbjct: 61  RATMARKLAALRSFIKFLCRENILADNPIAAVSTPKQERKLPRFLYTREIDLLM-----N 115

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
               +     R+ AIL  LY  GLR+SE  +L   +I   +  +++ GKG K RIVPL  
Sbjct: 116 APDLSMAAGKRDRAILETLYASGLRVSELTNLDKPDIDFGEDYIKVLGKGGKERIVPLGS 175

Query: 205 SVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
             R+A+L Y        +        LF    G+ L+    +  I +    + +    + 
Sbjct: 176 KAREALLLYLQQGRVYLEAKGQASPALFLNKNGQRLSTRSIRNIINKYVETIAINQKVSP 235

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           HTLRHSFATHLL+NG DLRS+Q +LGH +LSTTQIYT+++     + + +I+ QTHP 
Sbjct: 236 HTLRHSFATHLLNNGADLRSVQELLGHVKLSTTQIYTHLS----REKIKDIHQQTHPR 289


>gi|308176942|ref|YP_003916348.1| tyrosine recombinase subunit XerD [Arthrobacter arilaitensis Re117]
 gi|307744405|emb|CBT75377.1| tyrosine recombinase subunit XerD [Arthrobacter arilaitensis Re117]
          Length = 307

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 90/320 (28%), Positives = 154/320 (48%), Gaps = 22/320 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S +     + +LQ+L IERGL++ TL SY  D  +++  +     +   ++  ++++  
Sbjct: 1   MSDQFETPLKRYLQHLAIERGLAENTLASYRRDLLRYVDTM-----QAAGVEQPQKITEL 55

Query: 70  EIRAFISKR-----RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            I  ++        + + +  RS+ R    I+   KY +   I   +    ++      S
Sbjct: 56  AISGYLQDLSRGNEKHKALSARSVARHSVAIRQLHKYWELEGICVPNPAREIQPPAIGQS 115

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP+A++  Q  +++++V + T         R+ AIL  LY  G RISE + L   ++   
Sbjct: 116 LPKAISIDQVTSILESVSIETPA-----GLRDRAILEFLYSTGARISEVVDLDVDDLHFA 170

Query: 185 Q-STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPG 241
           Q + +R+ GKG K R+VP+    ++A+ +Y       L    +    LF   RG  L+  
Sbjct: 171 QDAVVRLFGKGSKERVVPVGGYAQRAVSDYLVRARPSLAAKGKGTPALFLNQRGGRLSRQ 230

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                + +     G+    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V
Sbjct: 231 SVWLLLSKAAERAGITTEVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTKV 290

Query: 302 NSKNGGDWMMEIYDQTHPSI 321
                 D + E Y   HP +
Sbjct: 291 T----VDSLREAYQLAHPRV 306


>gi|328472418|gb|EGF43284.1| site-specific tyrosine recombinase XerC [Vibrio parahaemolyticus
           10329]
          Length = 310

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 83/317 (26%), Positives = 155/317 (48%), Gaps = 16/317 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
            +   L K  + + + L  E+GLS  T ++Y+         LA     ++ ++   Q+  
Sbjct: 8   PLPSSLQKPLERFYEFLRSEKGLSLHTQRNYKQQLETMAQHLA-----EMGLKDWSQVDA 62

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R    K   + +   SL   LS ++SF  +L  R   + +    +   +K   LP+ 
Sbjct: 63  GWVRQLAGKGMREGMKASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKN 122

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+  +   L++       +E   +  R+ A++ L+YG GLR++E +S+  +++      L
Sbjct: 123 LDVDEVNQLLEV------NEDDPLAIRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGEL 176

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R+ GKGDK R VP      + + ++  +   DL    +  LF    G  ++    Q+ + 
Sbjct: 177 RVIGKGDKERKVPFSGMATEWVGKWLRVR-GDLAAPGEPALFVSKLGTRISHRSVQKRMA 235

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +  +   +    + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ ++   
Sbjct: 236 EWGQKQSVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQH--- 292

Query: 309 WMMEIYDQTHPSITQKD 325
            + + YDQ HP   +K+
Sbjct: 293 -LAQAYDQAHPRARKKN 308


>gi|30249429|ref|NP_841499.1| phage integrase domain/SAM domain-containing protein [Nitrosomonas
           europaea ATCC 19718]
 gi|30138792|emb|CAD85369.1| Phage integrase:Phage integrase N-terminal SAM-like domain
           [Nitrosomonas europaea ATCC 19718]
          Length = 318

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 95/306 (31%), Positives = 150/306 (49%), Gaps = 13/306 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +   L +E GLS+ TL SY  D  Q + +L     +  T  ++  ++  ++ AF+S 
Sbjct: 24  LDEFTDALWLEDGLSRNTLASYRADLMQLVEWLGR---QPRTNGSLSDVTQADLLAFLSD 80

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  Q +   +  R+L+ IK F +YL ++         N+ + K S  LP +L E +   L
Sbjct: 81  RIGQGVKASTTCRALTCIKRFYRYLLRQGKILADPATNIDSPKISRHLPVSLTETEVEAL 140

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +           + +  R+ A+L +LY  GLR+SE + L+   I  D   +RI GKG K 
Sbjct: 141 L-----AAPDTRQPLGLRDRAMLEILYAAGLRVSELVGLSISQIRQDMGVVRILGKGSKE 195

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R++PL       +  Y     P  L        F   RG  +    F   I++  R  G+
Sbjct: 196 RLIPLGEEALHWLSLYLQEARPVLLAGKHSNMSFVTTRGDAMTRQAFWYLIKRHARQAGI 255

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     + +++ +
Sbjct: 256 VKLLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LKQLHAR 311

Query: 317 THPSIT 322
            HP  T
Sbjct: 312 HHPRGT 317


>gi|16078677|ref|NP_389496.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221309489|ref|ZP_03591336.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313814|ref|ZP_03595619.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318738|ref|ZP_03600032.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323009|ref|ZP_03604303.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321315380|ref|YP_004207667.1| site-specific tyrosine recombinase XerC [Bacillus subtilis BSn5]
 gi|729174|sp|P39776|XERC_BACSU RecName: Full=Tyrosine recombinase xerC
 gi|535348|gb|AAB03369.1| CodV [Bacillus subtilis subsp. subtilis str. JH642]
 gi|2633986|emb|CAB13487.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|320021654|gb|ADV96640.1| site-specific tyrosine recombinase XerC [Bacillus subtilis BSn5]
          Length = 304

 Score =  263 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 155/308 (50%), Gaps = 17/308 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +++ L+IE+  S+ T+ +Y     +F  FL         I    + +Y + R F+++   
Sbjct: 11  FVEYLQIEKNYSQYTIVNYVDSIEEFETFLRVQ-----GINGFEEAAYQDTRIFLTEAYE 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  R++ + +S ++SF K+L + K+  E+    +   K+   +P+ L +K+   L + 
Sbjct: 66  KGLSRRTISKKISALRSFYKFLMREKLIEENPFQLVHLPKQEKRIPKFLYQKELEELFE- 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                S  ++    R+ A+L LLY  G+R+SE  S+T  ++     T+ + GKG K R +
Sbjct: 125 ----VSDISQPAGMRDQALLELLYATGMRVSECCSITINDVDLFMDTVLVHGKGKKQRYI 180

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           P     R+A+  Y +     L +  + P   LF   RG PL     +  +  L +     
Sbjct: 181 PFGSYAREALKVYMNSGRQCLLMKAKEPHDLLFVNQRGGPLTARGIRHILSGLVQKASST 240

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           L    H LRH+FATHLL+ G DLRS+Q +LGH  LS+TQIYT+V+ +     +   Y   
Sbjct: 241 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKE----MLRNTYMSH 296

Query: 318 HPSITQKD 325
           HP   +K+
Sbjct: 297 HPRAFKKN 304


>gi|116748125|ref|YP_844812.1| tyrosine recombinase XerD [Syntrophobacter fumaroxidans MPOB]
 gi|116697189|gb|ABK16377.1| tyrosine recombinase XerD subunit [Syntrophobacter fumaroxidans
           MPOB]
          Length = 294

 Score =  263 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 149/308 (48%), Gaps = 16/308 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +    +L ++ +E+GLS  T+  Y  D ++ L +   +      + +   +S  +I +
Sbjct: 1   MDRWLDLFLNHITVEKGLSPNTVAGYGGDLQEMLGYFGKH-----GVSSWEAVSREDIVS 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++    + ++  RS  R L+ +++F KYL++    + S    +R  K +  LP+ L  ++
Sbjct: 56  YLES-VSGRLSHRSKARRLAALRAFFKYLERTGKMSGSPAALVRFPKFNPGLPKTLTGRE 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+             +  R+ A+L LLY  GLR+SE   L    +  +   L  +GK
Sbjct: 115 VDALL-----AAPAAGTPLGQRDRAMLELLYATGLRVSELADLQLDQVHLEAGYLVARGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           GDK R VP+     +A+  Y        L       +F   R   L      + I+Q   
Sbjct: 170 GDKERPVPMGEPAGEALQIYLRDGRRRLLKDGRSREVFLNRRAVKLTRQGIWKIIKQYAL 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+  + T H LRHSFATHLL NG DLRS+Q++LGH  +STTQIYT+V  K     + E
Sbjct: 230 KSGIRQNLTPHVLRHSFATHLLENGADLRSLQAMLGHADISTTQIYTHVAKKR----LKE 285

Query: 313 IYDQTHPS 320
           ++ + HP 
Sbjct: 286 VHLKFHPR 293


>gi|262392887|ref|YP_003284741.1| tyrosine recombinase XerC [Vibrio sp. Ex25]
 gi|262336481|gb|ACY50276.1| tyrosine recombinase XerC [Vibrio sp. Ex25]
          Length = 310

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 83/312 (26%), Positives = 154/312 (49%), Gaps = 16/312 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L K  + + + L  E+GLS  T ++Y+         LA     ++ ++   Q+    +R 
Sbjct: 13  LQKPLERFYEFLRSEKGLSLHTQRNYKQQLETMAQHLA-----EMGLKDWSQVDAGWVRQ 67

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
              K   + +   SL   LS ++SF  +L  R   + +    +   +K   LP+ L+  +
Sbjct: 68  LAGKGMREGMKASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDE 127

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++       +E   +  R+ A++ L+YG GLR++E +S+  +++      LR+ GK
Sbjct: 128 VSQLLEV------NEDDPLAVRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVIGK 181

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GDK R VP      + + ++  +   DL    +  LF    G  ++    Q+ + +  + 
Sbjct: 182 GDKERKVPFSGMATEWVAKWLKVR-GDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQK 240

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ ++    + + 
Sbjct: 241 QSVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQH----LAQA 296

Query: 314 YDQTHPSITQKD 325
           YDQ HP   +K+
Sbjct: 297 YDQAHPRARKKN 308


>gi|324115089|gb|EGC09054.1| tyrosine recombinase XerD [Escherichia fergusonii B253]
          Length = 298

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 149/309 (48%), Gaps = 17/309 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L  L +E+ L++ TL +Y  D    + +L           T+      +++A 
Sbjct: 5   LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG------LTLATAQSDDLQAL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R        S  R LS ++   +YL +     +    ++ + K    LP+ L+E Q 
Sbjct: 59  LAERLEGGYKATSSARLLSAVRRLFQYLYRENFREDDPSAHLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+   L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG
Sbjct: 119 ERLLQAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y     P+ LN      LF   R + +    F   I+     
Sbjct: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHPSI 321
           ++ Q HP  
Sbjct: 290 LHQQHHPRA 298


>gi|149920280|ref|ZP_01908751.1| integrase/recombinase XerD [Plesiocystis pacifica SIR-1]
 gi|149818867|gb|EDM78307.1| integrase/recombinase XerD [Plesiocystis pacifica SIR-1]
          Length = 302

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 87/311 (27%), Positives = 149/311 (47%), Gaps = 16/311 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
            L    +++LQ+L++ER LS  TL++Y  D R+ L  L+    E+ +     Q+S   + 
Sbjct: 6   ALEDLVEDYLQHLKVERNLSPNTLEAYGNDLRRLLDALSGAGVERAS-----QVSPAALL 60

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F+       +  RS  R    ++   ++L+  ++        +   K  N LP  L+ +
Sbjct: 61  GFLRSLAEAGLSARSQARRWVAVRGLFRWLRSEQLVEVDPTQGIALPKAVNKLPELLSRE 120

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + + L+             +  R++A+L  +Y  G R+SEA  L   ++  DQ  + + G
Sbjct: 121 EVVRLI-----AAPGVDTPLGLRDTALLEFMYATGCRVSEACDLELSSLHLDQGLVVLTG 175

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQL 250
           KG K R+VPL      A+L + +    +L      +  +F   RG  L+       +RQ 
Sbjct: 176 KGSKQRMVPLGDCALVALLAWLEEGRPELVARAPREAHVFVNKRGSRLSRQGCFFRLRQH 235

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+    + H LRHSFATHL+  G DLR++Q++LGH  +STTQ+YT+++  +    +
Sbjct: 236 AVSAGITRDISPHKLRHSFATHLIEGGADLRAVQTLLGHADISTTQVYTHLSQSH----V 291

Query: 311 MEIYDQTHPSI 321
              YD  HP  
Sbjct: 292 RHAYDLHHPRA 302


>gi|322381748|ref|ZP_08055702.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154136|gb|EFX46458.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 298

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 89/311 (28%), Positives = 142/311 (45%), Gaps = 16/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++   ++  L+ ER L+  T++SY+ D  Q+  FL+        I    +     +  
Sbjct: 1   MKQKLDEFIIYLQDERRLAPNTVESYKKDLAQYADFLSSE-----GILAWEETQRVHVIT 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++  +       ++ R+L  I++   YL + ++ T      + + K    +P  L  ++
Sbjct: 56  YMNNLKQLGRAPATISRTLVSIRALYHYLIREQVMTLDPSGQVESPKAETKIPVILTVEE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                 + LL   +       R+ A+L LLY  G+R+SE ++L   +I  D   +R  G 
Sbjct: 116 M-----DNLLGVPNTGTSSGLRDKAMLELLYATGIRVSELITLNKGDIYADLGYVRCTGT 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G K RIVP+       I  Y +     L         LF    G  +    F + +++  
Sbjct: 171 GGKERIVPMGKVATLWIQRYLNEAREALLKEGKPDKALFLNHIGTRMTRQGFWKMMKKYA 230

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+    T HTLRHSFATHLL NG DLR++Q +LGH  LSTTQ YT V        M 
Sbjct: 231 TEAGIHKEITPHTLRHSFATHLLENGADLRAVQELLGHSDLSTTQRYTFVT----KTKMK 286

Query: 312 EIYDQTHPSIT 322
           E+YD THP   
Sbjct: 287 EVYDLTHPRAK 297


>gi|169827277|ref|YP_001697435.1| tyrosine recombinase xerD [Lysinibacillus sphaericus C3-41]
 gi|168991765|gb|ACA39305.1| Tyrosine recombinase xerD [Lysinibacillus sphaericus C3-41]
          Length = 300

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 96/311 (30%), Positives = 151/311 (48%), Gaps = 15/311 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E     ++++  +++ER LS  TL SY  D   ++ FL    +    +     +  T I 
Sbjct: 3   EFQYAVEDYIHFIQVERQLSVNTLASYRRDLESYVNFL----QNAEGMANFNHIERTTIL 58

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
             + + R Q    R++ R +S I+SF ++L + K       +++        LP  L+ +
Sbjct: 59  RHLEQLRVQGKTSRTIARHISSIRSFHQFLLREKRAESDPTVHLEMPTIEQKLPNILSIE 118

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L     L   + +K    R+ A+L LLYG G+RISE ++L   ++      +R+ G
Sbjct: 119 EIEAL-----LTAPNRSKPQGIRDLAMLELLYGSGMRISELIALDLADLHLTMGFVRVFG 173

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQL 250
           KG K RI+PL  S   AI  Y +     L          F   RGK L      + +++ 
Sbjct: 174 KGGKERIIPLGKSALSAISTYLNNARGQLQGKYPKTDAFFINQRGKRLTRQGCWKLMKEH 233

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+    T HTLRHSFATHL+ NG DLR++Q +LGH  +STTQIYT+++       +
Sbjct: 234 ALKAGIQHELTPHTLRHSFATHLVENGADLRAVQEMLGHADISTTQIYTHISKTR----L 289

Query: 311 MEIYDQTHPSI 321
            E+Y Q HP  
Sbjct: 290 SEVYKQFHPRA 300


>gi|56419747|ref|YP_147065.1| site-specific tyrosine recombinase XerC [Geobacillus kaustophilus
           HTA426]
 gi|56379589|dbj|BAD75497.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
          Length = 289

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 96/303 (31%), Positives = 152/303 (50%), Gaps = 17/303 (5%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           ++ L+IE+  S+ T+  Y  D  QF  F+     ++  I  + ++SY+++R +++K   Q
Sbjct: 1   MEYLQIEKNYSQYTIVCYRRDIEQFFRFM-----DEEGIGALNEVSYSDVRLYLTKLYEQ 55

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
           ++  RS+ R +S ++SF K+L +     E+        KK   +P  L  K+   L    
Sbjct: 56  QLASRSVARKISSLRSFYKFLLREGRAAENPFALATLPKKEQKIPNFLYPKELEALF--- 112

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
               + E   +  RN+A+L LLY  G R+SE   +   ++     T+ I GKG+K R VP
Sbjct: 113 --LVNDENTALGQRNAALLELLYATGARVSECCHIQLSDVDFVAETVLIHGKGNKQRYVP 170

Query: 202 LLPSVRKAILEYYDLCPFDLNLN---IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
                R+A+  Y      +L          LF   RG PL P   +  + ++     L  
Sbjct: 171 FGRPAREALERYIHRGRRELTRKLPADHRYLFVNARGNPLTPRGVRHILDRIVEAAALTQ 230

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + + H LRH+FATHLL+ G DLRS+Q +LGH  LS+TQ+YT+V      D +  IY Q H
Sbjct: 231 NISPHVLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVT----KDRLRHIYLQAH 286

Query: 319 PSI 321
           P  
Sbjct: 287 PRA 289


>gi|154252172|ref|YP_001412996.1| tyrosine recombinase XerD [Parvibaculum lavamentivorans DS-1]
 gi|154156122|gb|ABS63339.1| tyrosine recombinase XerD [Parvibaculum lavamentivorans DS-1]
          Length = 319

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 92/321 (28%), Positives = 148/321 (46%), Gaps = 18/321 (5%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           S E     + +L+ L  ERG ++ TL +YE D + F  FL          + + Q S  +
Sbjct: 5   SQERGHHLEAFLEMLSAERGAARNTLDAYERDLKDFSGFLVSRG------RDLVQASAND 58

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           IR ++     Q +   +  R LS I+ F  +L    + T+    ++   +++  LP+ L 
Sbjct: 59  IRQYLENLSDQGLSASTAARRLSAIRQFHGFLFAEGVRTDDPCGSIEGPRRARPLPKTLT 118

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNS------AILYLLYGCGLRISEALSLTPQNIMDD 184
            ++   L+          T+              ++ +LY  GLR+SE + L    +   
Sbjct: 119 VEEVDALLSAAQRAEDGRTQEESVLAYKRARLVCLMEVLYATGLRVSELVGLPLSAVRGQ 178

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVF 243
           +  L + GKG + R+VPL  + R AI  Y  L    L   +   LF    R   L    F
Sbjct: 179 ERFLAVSGKGGRERLVPLSETARAAIDAYLPLRSLRLGEQVSPWLFPSRGRQGHLTRHRF 238

Query: 244 QRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            + ++ L    GL     + HTLRH+FA+HLL+NG DLR++Q +LGH  +STTQIYT+V 
Sbjct: 239 AQLLKDLAVAAGLDASRVSPHTLRHAFASHLLANGADLRAVQQMLGHADISTTQIYTHVL 298

Query: 303 SKNGGDWMMEIYDQTHPSITQ 323
            +     + E+    HP   +
Sbjct: 299 DER----LKELVQTHHPLAKK 315


>gi|16130796|ref|NP_417370.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. MG1655]
 gi|26249309|ref|NP_755349.1| site-specific tyrosine recombinase XerD [Escherichia coli CFT073]
 gi|74313452|ref|YP_311871.1| site-specific tyrosine recombinase XerD [Shigella sonnei Ss046]
 gi|82545483|ref|YP_409430.1| site-specific tyrosine recombinase XerD [Shigella boydii Sb227]
 gi|82778340|ref|YP_404689.1| site-specific tyrosine recombinase XerD [Shigella dysenteriae
           Sd197]
 gi|89109673|ref|AP_003453.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. W3110]
 gi|110643042|ref|YP_670772.1| site-specific tyrosine recombinase XerD [Escherichia coli 536]
 gi|110806797|ref|YP_690317.1| site-specific tyrosine recombinase XerD [Shigella flexneri 5 str.
           8401]
 gi|157158312|ref|YP_001464231.1| site-specific tyrosine recombinase XerD [Escherichia coli E24377A]
 gi|168747627|ref|ZP_02772649.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4113]
 gi|168753832|ref|ZP_02778839.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4401]
 gi|168766887|ref|ZP_02791894.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4486]
 gi|168775771|ref|ZP_02800778.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4196]
 gi|168778907|ref|ZP_02803914.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4076]
 gi|168785740|ref|ZP_02810747.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC869]
 gi|168800027|ref|ZP_02825034.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC508]
 gi|170082455|ref|YP_001731775.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. DH10B]
 gi|170681991|ref|YP_001745047.1| site-specific tyrosine recombinase XerD [Escherichia coli SMS-3-5]
 gi|187732006|ref|YP_001881663.1| site-specific tyrosine recombinase XerD [Shigella boydii CDC
           3083-94]
 gi|188496120|ref|ZP_03003390.1| tyrosine recombinase XerD [Escherichia coli 53638]
 gi|191166010|ref|ZP_03027846.1| tyrosine recombinase XerD [Escherichia coli B7A]
 gi|191173237|ref|ZP_03034768.1| tyrosine recombinase XerD [Escherichia coli F11]
 gi|193063471|ref|ZP_03044560.1| tyrosine recombinase XerD [Escherichia coli E22]
 gi|193070556|ref|ZP_03051495.1| tyrosine recombinase XerD [Escherichia coli E110019]
 gi|194426297|ref|ZP_03058852.1| tyrosine recombinase XerD [Escherichia coli B171]
 gi|194431675|ref|ZP_03063966.1| tyrosine recombinase XerD [Shigella dysenteriae 1012]
 gi|194436800|ref|ZP_03068900.1| tyrosine recombinase XerD [Escherichia coli 101-1]
 gi|195936512|ref|ZP_03081894.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           str. EC4024]
 gi|208806438|ref|ZP_03248775.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4206]
 gi|208814608|ref|ZP_03255937.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4045]
 gi|208820065|ref|ZP_03260385.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4042]
 gi|209398903|ref|YP_002272368.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4115]
 gi|209920348|ref|YP_002294432.1| site-specific tyrosine recombinase XerD [Escherichia coli SE11]
 gi|215488194|ref|YP_002330625.1| site-specific tyrosine recombinase XerD [Escherichia coli O127:H6
           str. E2348/69]
 gi|218555442|ref|YP_002388355.1| site-specific tyrosine recombinase XerD [Escherichia coli IAI1]
 gi|218691019|ref|YP_002399231.1| site-specific tyrosine recombinase XerD [Escherichia coli ED1a]
 gi|218696489|ref|YP_002404156.1| site-specific tyrosine recombinase XerD [Escherichia coli 55989]
 gi|227888443|ref|ZP_04006248.1| site-specific tyrosine recombinase [Escherichia coli 83972]
 gi|238902019|ref|YP_002927815.1| site-specific tyrosine recombinase [Escherichia coli BW2952]
 gi|253772265|ref|YP_003035096.1| site-specific tyrosine recombinase XerD [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162806|ref|YP_003045914.1| site-specific tyrosine recombinase XerD [Escherichia coli B str.
           REL606]
 gi|254794844|ref|YP_003079681.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           str. TW14359]
 gi|256019308|ref|ZP_05433173.1| site-specific tyrosine recombinase XerD [Shigella sp. D9]
 gi|256024596|ref|ZP_05438461.1| site-specific tyrosine recombinase XerD [Escherichia sp. 4_1_40B]
 gi|260845562|ref|YP_003223340.1| site-specific tyrosine recombinase XerD [Escherichia coli O103:H2
           str. 12009]
 gi|260857017|ref|YP_003230908.1| site-specific tyrosine recombinase XerD [Escherichia coli O26:H11
           str. 11368]
 gi|260869571|ref|YP_003235973.1| site-specific tyrosine recombinase XerD [Escherichia coli O111:H-
           str. 11128]
 gi|261226207|ref|ZP_05940488.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256538|ref|ZP_05949071.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           str. FRIK966]
 gi|291284213|ref|YP_003501031.1| Tyrosine recombinase xerD [Escherichia coli O55:H7 str. CB9615]
 gi|293412253|ref|ZP_06654976.1| tyrosine recombinase XerD [Escherichia coli B354]
 gi|293416147|ref|ZP_06658787.1| tyrosine recombinase XerD [Escherichia coli B185]
 gi|293449216|ref|ZP_06663637.1| tyrosine recombinase XerD [Escherichia coli B088]
 gi|297521422|ref|ZP_06939808.1| site-specific tyrosine recombinase XerD [Escherichia coli OP50]
 gi|300815654|ref|ZP_07095878.1| tyrosine recombinase XerD [Escherichia coli MS 107-1]
 gi|300820698|ref|ZP_07100849.1| tyrosine recombinase XerD [Escherichia coli MS 119-7]
 gi|300906556|ref|ZP_07124247.1| tyrosine recombinase XerD [Escherichia coli MS 84-1]
 gi|300921226|ref|ZP_07137599.1| tyrosine recombinase XerD [Escherichia coli MS 115-1]
 gi|300925125|ref|ZP_07141039.1| tyrosine recombinase XerD [Escherichia coli MS 182-1]
 gi|300928170|ref|ZP_07143712.1| tyrosine recombinase XerD [Escherichia coli MS 187-1]
 gi|300936040|ref|ZP_07150988.1| tyrosine recombinase XerD [Escherichia coli MS 21-1]
 gi|300947617|ref|ZP_07161788.1| tyrosine recombinase XerD [Escherichia coli MS 116-1]
 gi|300954266|ref|ZP_07166729.1| tyrosine recombinase XerD [Escherichia coli MS 175-1]
 gi|300980312|ref|ZP_07174966.1| tyrosine recombinase XerD [Escherichia coli MS 45-1]
 gi|300995674|ref|ZP_07181202.1| tyrosine recombinase XerD [Escherichia coli MS 200-1]
 gi|301027808|ref|ZP_07191113.1| tyrosine recombinase XerD [Escherichia coli MS 196-1]
 gi|301049322|ref|ZP_07196292.1| tyrosine recombinase XerD [Escherichia coli MS 185-1]
 gi|301303052|ref|ZP_07209179.1| tyrosine recombinase XerD [Escherichia coli MS 124-1]
 gi|301327295|ref|ZP_07220551.1| tyrosine recombinase XerD [Escherichia coli MS 78-1]
 gi|301643756|ref|ZP_07243794.1| tyrosine recombinase XerD [Escherichia coli MS 146-1]
 gi|307139581|ref|ZP_07498937.1| site-specific tyrosine recombinase XerD [Escherichia coli H736]
 gi|307310487|ref|ZP_07590135.1| tyrosine recombinase XerD [Escherichia coli W]
 gi|309785299|ref|ZP_07679930.1| tyrosine recombinase XerD [Shigella dysenteriae 1617]
 gi|312964846|ref|ZP_07779086.1| tyrosine recombinase XerD [Escherichia coli 2362-75]
 gi|331643584|ref|ZP_08344715.1| tyrosine recombinase XerD [Escherichia coli H736]
 gi|331648640|ref|ZP_08349728.1| tyrosine recombinase XerD [Escherichia coli M605]
 gi|331659024|ref|ZP_08359966.1| tyrosine recombinase XerD [Escherichia coli TA206]
 gi|331664467|ref|ZP_08365373.1| tyrosine recombinase XerD [Escherichia coli TA143]
 gi|331669629|ref|ZP_08370475.1| tyrosine recombinase XerD [Escherichia coli TA271]
 gi|331674379|ref|ZP_08375139.1| tyrosine recombinase XerD [Escherichia coli TA280]
 gi|331678881|ref|ZP_08379555.1| tyrosine recombinase XerD [Escherichia coli H591]
 gi|331684520|ref|ZP_08385112.1| tyrosine recombinase XerD [Escherichia coli H299]
 gi|332280422|ref|ZP_08392835.1| tyrosine recombinase xerD [Shigella sp. D9]
 gi|67475548|sp|P0A8P8|XERD_ECOLI RecName: Full=Tyrosine recombinase xerD
 gi|67475549|sp|P0A8P9|XERD_ECOL6 RecName: Full=Tyrosine recombinase xerD
 gi|26109717|gb|AAN81922.1|AE016766_10 Integrase/recombinase xerD [Escherichia coli CFT073]
 gi|147548|gb|AAA62787.1| xprB [Escherichia coli]
 gi|887844|gb|AAA83075.1| site-specific integrase/recombinase, with xerC [Escherichia coli]
 gi|1789261|gb|AAC75932.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. MG1655]
 gi|73856929|gb|AAZ89636.1| site-specific recombinase [Shigella sonnei Ss046]
 gi|81242488|gb|ABB63198.1| site-specific recombinase [Shigella dysenteriae Sd197]
 gi|81246894|gb|ABB67602.1| site-specific recombinase [Shigella boydii Sb227]
 gi|85675706|dbj|BAE76959.1| site-specific tyrosine recombinase [Escherichia coli str. K12
           substr. W3110]
 gi|110344634|gb|ABG70871.1| integrase/recombinase XerD [Escherichia coli 536]
 gi|110616345|gb|ABF05012.1| site-specific recombinase [Shigella flexneri 5 str. 8401]
 gi|157080342|gb|ABV20050.1| tyrosine recombinase XerD [Escherichia coli E24377A]
 gi|169890290|gb|ACB03997.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. DH10B]
 gi|170519709|gb|ACB17887.1| tyrosine recombinase XerD [Escherichia coli SMS-3-5]
 gi|187428998|gb|ACD08272.1| tyrosine recombinase XerD [Shigella boydii CDC 3083-94]
 gi|187768812|gb|EDU32656.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4196]
 gi|188017752|gb|EDU55874.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4113]
 gi|188491319|gb|EDU66422.1| tyrosine recombinase XerD [Escherichia coli 53638]
 gi|189003626|gb|EDU72612.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4076]
 gi|189358670|gb|EDU77089.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4401]
 gi|189363773|gb|EDU82192.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4486]
 gi|189373936|gb|EDU92352.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC869]
 gi|189377626|gb|EDU96042.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC508]
 gi|190903958|gb|EDV63671.1| tyrosine recombinase XerD [Escherichia coli B7A]
 gi|190906488|gb|EDV66096.1| tyrosine recombinase XerD [Escherichia coli F11]
 gi|192930748|gb|EDV83353.1| tyrosine recombinase XerD [Escherichia coli E22]
 gi|192956139|gb|EDV86603.1| tyrosine recombinase XerD [Escherichia coli E110019]
 gi|194415605|gb|EDX31872.1| tyrosine recombinase XerD [Escherichia coli B171]
 gi|194420031|gb|EDX36109.1| tyrosine recombinase XerD [Shigella dysenteriae 1012]
 gi|194424282|gb|EDX40269.1| tyrosine recombinase XerD [Escherichia coli 101-1]
 gi|208726239|gb|EDZ75840.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4206]
 gi|208735885|gb|EDZ84572.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4045]
 gi|208740188|gb|EDZ87870.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4042]
 gi|209160303|gb|ACI37736.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4115]
 gi|209760578|gb|ACI78601.1| site-specific recombinase [Escherichia coli]
 gi|209760582|gb|ACI78603.1| site-specific recombinase [Escherichia coli]
 gi|209760584|gb|ACI78604.1| site-specific recombinase [Escherichia coli]
 gi|209760586|gb|ACI78605.1| site-specific recombinase [Escherichia coli]
 gi|209913607|dbj|BAG78681.1| site-specific recombinase [Escherichia coli SE11]
 gi|215266266|emb|CAS10695.1| site-specific tyrosine recombinase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218353221|emb|CAU99139.1| site-specific tyrosine recombinase [Escherichia coli 55989]
 gi|218362210|emb|CAQ99828.1| site-specific tyrosine recombinase [Escherichia coli IAI1]
 gi|218428583|emb|CAR09510.2| site-specific tyrosine recombinase [Escherichia coli ED1a]
 gi|222034589|emb|CAP77331.1| Tyrosine recombinase xerD [Escherichia coli LF82]
 gi|227834712|gb|EEJ45178.1| site-specific tyrosine recombinase [Escherichia coli 83972]
 gi|238863557|gb|ACR65555.1| site-specific tyrosine recombinase [Escherichia coli BW2952]
 gi|242378425|emb|CAQ33206.1| site-specific recombinase, subunit of Xer site-specific
           recombination system [Escherichia coli BL21(DE3)]
 gi|253323309|gb|ACT27911.1| tyrosine recombinase XerD [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253974707|gb|ACT40378.1| site-specific tyrosine recombinase XerD [Escherichia coli B str.
           REL606]
 gi|253978873|gb|ACT44543.1| site-specific tyrosine recombinase XerD [Escherichia coli
           BL21(DE3)]
 gi|254594244|gb|ACT73605.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str.
           TW14359]
 gi|257755666|dbj|BAI27168.1| site-specific tyrosine recombinase XerD [Escherichia coli O26:H11
           str. 11368]
 gi|257760709|dbj|BAI32206.1| site-specific tyrosine recombinase XerD [Escherichia coli O103:H2
           str. 12009]
 gi|257765927|dbj|BAI37422.1| site-specific tyrosine recombinase XerD [Escherichia coli O111:H-
           str. 11128]
 gi|260448060|gb|ACX38482.1| tyrosine recombinase XerD [Escherichia coli DH1]
 gi|281179899|dbj|BAI56229.1| site-specific recombinase [Escherichia coli SE15]
 gi|284922842|emb|CBG35931.1| tyrosine recombinase [Escherichia coli 042]
 gi|290764086|gb|ADD58047.1| Tyrosine recombinase xerD [Escherichia coli O55:H7 str. CB9615]
 gi|291322306|gb|EFE61735.1| tyrosine recombinase XerD [Escherichia coli B088]
 gi|291432336|gb|EFF05318.1| tyrosine recombinase XerD [Escherichia coli B185]
 gi|291469024|gb|EFF11515.1| tyrosine recombinase XerD [Escherichia coli B354]
 gi|299879070|gb|EFI87281.1| tyrosine recombinase XerD [Escherichia coli MS 196-1]
 gi|300298921|gb|EFJ55306.1| tyrosine recombinase XerD [Escherichia coli MS 185-1]
 gi|300304782|gb|EFJ59302.1| tyrosine recombinase XerD [Escherichia coli MS 200-1]
 gi|300318727|gb|EFJ68511.1| tyrosine recombinase XerD [Escherichia coli MS 175-1]
 gi|300401595|gb|EFJ85133.1| tyrosine recombinase XerD [Escherichia coli MS 84-1]
 gi|300409320|gb|EFJ92858.1| tyrosine recombinase XerD [Escherichia coli MS 45-1]
 gi|300411832|gb|EFJ95142.1| tyrosine recombinase XerD [Escherichia coli MS 115-1]
 gi|300418727|gb|EFK02038.1| tyrosine recombinase XerD [Escherichia coli MS 182-1]
 gi|300452792|gb|EFK16412.1| tyrosine recombinase XerD [Escherichia coli MS 116-1]
 gi|300458832|gb|EFK22325.1| tyrosine recombinase XerD [Escherichia coli MS 21-1]
 gi|300463810|gb|EFK27303.1| tyrosine recombinase XerD [Escherichia coli MS 187-1]
 gi|300526962|gb|EFK48031.1| tyrosine recombinase XerD [Escherichia coli MS 119-7]
 gi|300531583|gb|EFK52645.1| tyrosine recombinase XerD [Escherichia coli MS 107-1]
 gi|300841716|gb|EFK69476.1| tyrosine recombinase XerD [Escherichia coli MS 124-1]
 gi|300846158|gb|EFK73918.1| tyrosine recombinase XerD [Escherichia coli MS 78-1]
 gi|301077855|gb|EFK92661.1| tyrosine recombinase XerD [Escherichia coli MS 146-1]
 gi|306909382|gb|EFN39877.1| tyrosine recombinase XerD [Escherichia coli W]
 gi|307554870|gb|ADN47645.1| site-specific tyrosine recombinase XerD [Escherichia coli ABU
           83972]
 gi|308926419|gb|EFP71895.1| tyrosine recombinase XerD [Shigella dysenteriae 1617]
 gi|309703254|emb|CBJ02589.1| tyrosine recombinase [Escherichia coli ETEC H10407]
 gi|312290402|gb|EFR18282.1| tyrosine recombinase XerD [Escherichia coli 2362-75]
 gi|312947427|gb|ADR28254.1| site-specific tyrosine recombinase XerD [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315062198|gb|ADT76525.1| site-specific tyrosine recombinase [Escherichia coli W]
 gi|315137493|dbj|BAJ44652.1| tyrosine recombinase xerD [Escherichia coli DH1]
 gi|315256777|gb|EFU36745.1| tyrosine recombinase XerD [Escherichia coli MS 85-1]
 gi|315293873|gb|EFU53225.1| tyrosine recombinase XerD [Escherichia coli MS 153-1]
 gi|315295682|gb|EFU55002.1| tyrosine recombinase XerD [Escherichia coli MS 16-3]
 gi|315614950|gb|EFU95588.1| tyrosine recombinase XerD [Escherichia coli 3431]
 gi|320175918|gb|EFW50996.1| Tyrosine recombinase XerD [Shigella dysenteriae CDC 74-1112]
 gi|320182203|gb|EFW57106.1| Tyrosine recombinase XerD [Shigella boydii ATCC 9905]
 gi|320184562|gb|EFW59363.1| Tyrosine recombinase XerD [Shigella flexneri CDC 796-83]
 gi|320189238|gb|EFW63897.1| Tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC1212]
 gi|320195013|gb|EFW69642.1| Tyrosine recombinase XerD [Escherichia coli WV_060327]
 gi|320202554|gb|EFW77124.1| Tyrosine recombinase XerD [Escherichia coli EC4100B]
 gi|320640537|gb|EFX10076.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           str. G5101]
 gi|320645784|gb|EFX14769.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H-
           str. 493-89]
 gi|320651084|gb|EFX19524.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H-
           str. H 2687]
 gi|320656580|gb|EFX24476.1| site-specific tyrosine recombinase XerD [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320662100|gb|EFX29501.1| site-specific tyrosine recombinase XerD [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320667175|gb|EFX34138.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           str. LSU-61]
 gi|323162515|gb|EFZ48365.1| tyrosine recombinase XerD [Escherichia coli E128010]
 gi|323167900|gb|EFZ53590.1| tyrosine recombinase XerD [Shigella sonnei 53G]
 gi|323180338|gb|EFZ65890.1| tyrosine recombinase XerD [Escherichia coli 1180]
 gi|323183448|gb|EFZ68845.1| tyrosine recombinase XerD [Escherichia coli 1357]
 gi|323188707|gb|EFZ73992.1| tyrosine recombinase XerD [Escherichia coli RN587/1]
 gi|323377218|gb|ADX49486.1| tyrosine recombinase XerD [Escherichia coli KO11]
 gi|323935874|gb|EGB32173.1| tyrosine recombinase XerD [Escherichia coli E1520]
 gi|323941585|gb|EGB37765.1| tyrosine recombinase XerD [Escherichia coli E482]
 gi|323946620|gb|EGB42643.1| tyrosine recombinase XerD [Escherichia coli H120]
 gi|323960809|gb|EGB56430.1| tyrosine recombinase XerD [Escherichia coli H489]
 gi|323966695|gb|EGB62127.1| tyrosine recombinase XerD [Escherichia coli M863]
 gi|323971668|gb|EGB66897.1| tyrosine recombinase XerD [Escherichia coli TA007]
 gi|323978814|gb|EGB73895.1| tyrosine recombinase XerD [Escherichia coli TW10509]
 gi|324005546|gb|EGB74765.1| tyrosine recombinase XerD [Escherichia coli MS 57-2]
 gi|324011756|gb|EGB80975.1| tyrosine recombinase XerD [Escherichia coli MS 60-1]
 gi|324119935|gb|EGC13814.1| tyrosine recombinase XerD [Escherichia coli E1167]
 gi|325498455|gb|EGC96314.1| site-specific tyrosine recombinase [Escherichia fergusonii ECD227]
 gi|326343096|gb|EGD66864.1| Tyrosine recombinase XerD [Escherichia coli O157:H7 str. 1125]
 gi|327251657|gb|EGE63343.1| tyrosine recombinase XerD [Escherichia coli STEC_7v]
 gi|330908926|gb|EGH37440.1| tyrosine recombinase XerD [Escherichia coli AA86]
 gi|331037055|gb|EGI09279.1| tyrosine recombinase XerD [Escherichia coli H736]
 gi|331042387|gb|EGI14529.1| tyrosine recombinase XerD [Escherichia coli M605]
 gi|331053606|gb|EGI25635.1| tyrosine recombinase XerD [Escherichia coli TA206]
 gi|331058398|gb|EGI30379.1| tyrosine recombinase XerD [Escherichia coli TA143]
 gi|331063297|gb|EGI35210.1| tyrosine recombinase XerD [Escherichia coli TA271]
 gi|331068473|gb|EGI39868.1| tyrosine recombinase XerD [Escherichia coli TA280]
 gi|331073711|gb|EGI45032.1| tyrosine recombinase XerD [Escherichia coli H591]
 gi|331078135|gb|EGI49341.1| tyrosine recombinase XerD [Escherichia coli H299]
 gi|332087665|gb|EGI92792.1| tyrosine recombinase XerD [Shigella dysenteriae 155-74]
 gi|332090893|gb|EGI95984.1| tyrosine recombinase XerD [Shigella boydii 3594-74]
 gi|332102774|gb|EGJ06120.1| tyrosine recombinase xerD [Shigella sp. D9]
 gi|332344790|gb|AEE58124.1| tyrosine recombinase XerD [Escherichia coli UMNK88]
 gi|332999673|gb|EGK19258.1| tyrosine recombinase XerD [Shigella flexneri VA-6]
          Length = 298

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 150/309 (48%), Gaps = 17/309 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L  L +E+ L++ TL +Y  D    + +L           T+      +++A 
Sbjct: 5   LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG------LTLATAQSDDLQAL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R        S  R LS ++   +YL + K   +    ++ + K    LP+ L+E Q 
Sbjct: 59  LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+   L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG
Sbjct: 119 ERLLQAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y     P+ LN      LF   R + +    F   I+     
Sbjct: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHPSI 321
           ++ Q HP  
Sbjct: 290 LHQQHHPRA 298


>gi|24114148|ref|NP_708658.1| site-specific tyrosine recombinase XerD [Shigella flexneri 2a str.
           301]
 gi|30064206|ref|NP_838377.1| site-specific tyrosine recombinase XerD [Shigella flexneri 2a str.
           2457T]
 gi|91212272|ref|YP_542258.1| site-specific tyrosine recombinase XerD [Escherichia coli UTI89]
 gi|218559887|ref|YP_002392800.1| site-specific tyrosine recombinase XerD [Escherichia coli S88]
 gi|237706462|ref|ZP_04536943.1| tyrosine recombinase xerD [Escherichia sp. 3_2_53FAA]
 gi|34222799|sp|Q7ZAM0|XERD_SHIFL RecName: Full=Tyrosine recombinase xerD
 gi|24053288|gb|AAN44365.1| site-specific recombinase [Shigella flexneri 2a str. 301]
 gi|30042463|gb|AAP18187.1| site-specific recombinase [Shigella flexneri 2a str. 2457T]
 gi|91073846|gb|ABE08727.1| site-specific recombinase [Escherichia coli UTI89]
 gi|218366656|emb|CAR04410.1| site-specific tyrosine recombinase [Escherichia coli S88]
 gi|226899502|gb|EEH85761.1| tyrosine recombinase xerD [Escherichia sp. 3_2_53FAA]
 gi|294492679|gb|ADE91435.1| tyrosine recombinase XerD [Escherichia coli IHE3034]
 gi|307625533|gb|ADN69837.1| site-specific tyrosine recombinase XerD [Escherichia coli UM146]
 gi|313647934|gb|EFS12380.1| tyrosine recombinase XerD [Shigella flexneri 2a str. 2457T]
 gi|315289443|gb|EFU48838.1| tyrosine recombinase XerD [Escherichia coli MS 110-3]
 gi|323951667|gb|EGB47542.1| tyrosine recombinase XerD [Escherichia coli H252]
 gi|323957385|gb|EGB53107.1| tyrosine recombinase XerD [Escherichia coli H263]
 gi|332752931|gb|EGJ83315.1| tyrosine recombinase XerD [Shigella flexneri 4343-70]
 gi|332753730|gb|EGJ84109.1| tyrosine recombinase XerD [Shigella flexneri K-671]
 gi|332754528|gb|EGJ84894.1| tyrosine recombinase XerD [Shigella flexneri 2747-71]
 gi|332765825|gb|EGJ96038.1| tyrosine recombinase XerD [Shigella flexneri 2930-71]
 gi|333000098|gb|EGK19681.1| tyrosine recombinase XerD [Shigella flexneri K-218]
 gi|333015114|gb|EGK34457.1| tyrosine recombinase XerD [Shigella flexneri K-304]
          Length = 298

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 150/309 (48%), Gaps = 17/309 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L  L +E+ L++ TL +Y  D    + +L           T+      +++A 
Sbjct: 5   LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG------LTLATAQSDDLQAL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R        S  R LS ++   +YL + K   +    ++ + K    LP+ L+E Q 
Sbjct: 59  LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+   L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG
Sbjct: 119 ERLLQAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y     P+ LN      LF   R + +    F   I+     
Sbjct: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHPSI 321
           ++ Q HP  
Sbjct: 290 LHQQHHPRA 298


>gi|227325794|ref|ZP_03829818.1| site-specific tyrosine recombinase XerC [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 311

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 82/325 (25%), Positives = 152/325 (46%), Gaps = 19/325 (5%)

Query: 1   MEGNNLP--EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI 58
           M     P     S  L  +   +L+ L++ER LS LT  SY       +  L+       
Sbjct: 1   MSRQPAPSEAPSSSPLQTDVDAFLRYLKVERQLSPLTQTSYLRQLSAVITILSA-----A 55

Query: 59  TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
            +   R+L  + +R+ +S+ +   +   SL   LS ++SFL ++  R +   +    +  
Sbjct: 56  GVADWRRLDASGVRSVVSRSKRDGLHSSSLALRLSALRSFLDWMVSRGVLVANPAKGVST 115

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            +    LP+ ++  +   L++  L         +  R+  +L ++YG GLR++E + +  
Sbjct: 116 PRAGRPLPKNMDVDETNRLLEINL------DDPLAVRDRTMLEVMYGAGLRLAELVGMDY 169

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           Q+I      + + GKG K R +P+  +    +  +  L   +L       +F   +G+ +
Sbjct: 170 QHIDLASGEIWVMGKGSKERKLPIGKTAVTWLERWLALR--ELFGPQDDAVFISNQGRRI 227

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +    Q+   +     G+      H LRHSFATH+L + GDLR++Q +LGH  L+TTQIY
Sbjct: 228 SMRNVQKRFAEWGIKQGINSHVHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIY 287

Query: 299 TNVNSKNGGDWMMEIYDQTHPSITQ 323
           T+++ ++    +  +YD  HP   +
Sbjct: 288 THLDFQH----LASVYDAAHPRAKR 308


>gi|183602465|ref|ZP_02963831.1| probable integrase/recombinase [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219683221|ref|YP_002469604.1| tyrosine recombinase XerD [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241191181|ref|YP_002968575.1| Integrase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196587|ref|YP_002970142.1| Integrase [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183218384|gb|EDT89029.1| probable integrase/recombinase [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219620871|gb|ACL29028.1| tyrosine recombinase XerD [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240249573|gb|ACS46513.1| Integrase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240251141|gb|ACS48080.1| Integrase [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|295794174|gb|ADG33709.1| Integrase [Bifidobacterium animalis subsp. lactis V9]
          Length = 307

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 89/318 (27%), Positives = 155/318 (48%), Gaps = 16/318 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++ EL      +L ++++ERGLS  T+Q+YE D  Q++ +L      +  I     ++  
Sbjct: 1   MNGELPMLEARFLAHIDVERGLSAATVQAYENDIDQYVRWLG-----EQGIAKAASITSN 55

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++  F++ +        SL R L+ I  F ++++  ++  +    ++R  K + +LP  L
Sbjct: 56  DVEDFVAAQSKSGTSAVSLARRLASIHMFHRFMQSERVVADDVSQSVRPPKSAETLPEVL 115

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              +   L+D         ++ +  R+SA+L L+Y  G R+SEA+ L   ++  D   +R
Sbjct: 116 TVDEVQRLLDA--ARHDDASEAVSMRDSALLELMYATGCRVSEAVGLDFTDVDMDAQVVR 173

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-----LNIQLPLFRGIRGKPLNPGVFQ 244
           + GKG K R+VP       A+  Y +    +L         +  +F   RGK L      
Sbjct: 174 LTGKGAKQRLVPFGTYAANALRAYVEHARPELENKAKGERERSAIFLNKRGKRLTRQSVW 233

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             I+       +      HTLRHSFATH+L  G D+R++Q +LGH  + TTQ+YT+V+  
Sbjct: 234 EIIKHAGALAHVSKPLHPHTLRHSFATHMLQGGADVRTVQELLGHASVKTTQMYTHVSQ- 292

Query: 305 NGGDWMMEIYDQTHPSIT 322
              D ++E Y  +HP   
Sbjct: 293 ---DTLIETYITSHPRAK 307


>gi|54023975|ref|YP_118217.1| site-specific tyrosine recombinase XerD [Nocardia farcinica IFM
           10152]
 gi|54015483|dbj|BAD56853.1| putative recombinase [Nocardia farcinica IFM 10152]
          Length = 316

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 87/324 (26%), Positives = 146/324 (45%), Gaps = 24/324 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +E   +L +L +ERG ++ TL +Y  D  ++  FL      +  I  + Q+   ++ A
Sbjct: 2   LAREIDAYLDHLAVERGAARNTLGAYRRDLGRYRDFLT-----ERGIGGLEQVREADVAA 56

Query: 74  FISKRRTQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           F    R+       +   S+ R+L  ++   ++     +T+      ++       LP+A
Sbjct: 57  FTVALRSGGGDHPPLAASSVARALIAVRGLHRFAAAEGMTSTDVAHAVKPPTPGRRLPKA 116

Query: 129 LNEKQALTLVDNVLLHTSHETK-------WIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           L   Q L L++      + +             R+ A+L LLY  G RISE + L   ++
Sbjct: 117 LPYDQVLRLLEAAGGGPAEDGDTAAADGGPRGLRDRALLELLYSTGARISEMVGLDVDDL 176

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPL 238
              +  + ++GKG K RIVP+      A+  Y       L    +     LF  +RG  L
Sbjct: 177 DTTERAVVLRGKGGKQRIVPIGRPALAAVDAYLVRGRPVLAAAGKGTGGALFLNVRGGRL 236

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +     + ++      G+  + + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIY
Sbjct: 237 SRQSAWQVLQTAAERAGIGAAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIY 296

Query: 299 TNVNSKNGGDWMMEIYDQTHPSIT 322
           T V        + E++   HP   
Sbjct: 297 TLVT----VSTLREVWATAHPRAR 316


>gi|167856576|ref|ZP_02479280.1| tyrosine recombinase XerD [Haemophilus parasuis 29755]
 gi|167852293|gb|EDS23603.1| tyrosine recombinase XerD [Haemophilus parasuis 29755]
          Length = 297

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 95/309 (30%), Positives = 150/309 (48%), Gaps = 18/309 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L    + +L  L  E+GLS+ T+ SY  D   F  +L+             ++ Y +++ 
Sbjct: 4   LDPIIEQFLDTLWQEQGLSENTVASYRLDLESFTQWLSE-------PNAFLKVDYVDLQT 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+ +R  Q     S  R LS ++ F ++L   K   +     + + +K   LP++L+E+Q
Sbjct: 57  FLGERLEQGYKATSSSRMLSCLRKFFRFLYLEKYRDDDPTATLTSPRKPAHLPKSLSEEQ 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
            L L+     +       ++ R+ A+L LLY  GLR++E +SLT  N+   Q  +RI GK
Sbjct: 117 VLDLL-----NIPDTQDPLELRDKAMLELLYATGLRVTELVSLTLDNLSLRQGLVRIIGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           GDK R+VPL       I +++       LN      +F    G  +    F   I+    
Sbjct: 172 GDKERLVPLGEEASYWIQQFFEYGRSSLLNGMQSDVVFPSRLGNQMTRQTFWHRIKHYAL 231

Query: 253 YLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             G+     + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT V        + 
Sbjct: 232 LAGIDSNKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTQV----AKTRLK 287

Query: 312 EIYDQTHPS 320
            ++ Q HP 
Sbjct: 288 SLHQQFHPR 296


>gi|85059971|ref|YP_455673.1| site-specific tyrosine recombinase XerD [Sodalis glossinidius str.
           'morsitans']
 gi|84780491|dbj|BAE75268.1| phage integrase [Sodalis glossinidius str. 'morsitans']
          Length = 299

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 94/306 (30%), Positives = 144/306 (47%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L +L +ER L++ TL SY  D +    +L     + +        S  +++AF++ 
Sbjct: 9   IEQFLDSLWLERNLAENTLASYRLDLQALSAWLQSQQRDSLNA------SSADLQAFLAD 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS  + F +YL + K         +   K    LP+ L+E Q    
Sbjct: 63  RLDHGYKATSSARLLSATRRFFQYLYREKRRGNDPSAGISAPKLPQRLPKDLSEAQV--- 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               LL        ++ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKGDK 
Sbjct: 120 --GDLLAAPAIADPVELRDKAMLEVLYATGLRVSELVGLTLSDVSLRQGVVRVIGKGDKE 177

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       I  Y +     L +      LF   R + +    F   I+      G+
Sbjct: 178 RLVPLGEEAVYWIEYYLEHGRPALTHGQSLDILFPSNRSRKMTRQTFWHRIKHYAILAGI 237

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +  I+ 
Sbjct: 238 DSERLSPHVLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATER----LKLIHQ 293

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 294 QHHPRA 299


>gi|91227527|ref|ZP_01261864.1| tyrosine recombinase [Vibrio alginolyticus 12G01]
 gi|91188551|gb|EAS74843.1| tyrosine recombinase [Vibrio alginolyticus 12G01]
          Length = 310

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 82/312 (26%), Positives = 153/312 (49%), Gaps = 16/312 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L K  + + + L  E+GLS  T ++Y+         LA     ++ ++   Q+    +R 
Sbjct: 13  LQKPLERFYEFLRSEKGLSLHTQRNYKQQLETMAQHLA-----EMGLKDWSQVDAGWVRQ 67

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
              K   + +   SL   LS ++SF  +L  R   + +    +   +K   LP+ L+  +
Sbjct: 68  LAGKGMREGMKASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDE 127

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++       +E   +  R+ A++ L+YG GLR++E + +  +++      LR+ GK
Sbjct: 128 VSQLLEV------NEDDPLAVRDRAMMELMYGAGLRLAELVGVDVRDVQLRSGELRVIGK 181

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GDK R VP      + + ++  +   DL    +  LF    G  ++    Q+ + +  + 
Sbjct: 182 GDKERKVPFSGMATEWVGKWLRVR-GDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQK 240

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ ++    + + 
Sbjct: 241 QSVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQH----LAQA 296

Query: 314 YDQTHPSITQKD 325
           YDQ HP   +K+
Sbjct: 297 YDQAHPRARKKN 308


>gi|325289988|ref|YP_004266169.1| tyrosine recombinase XerD subunit [Syntrophobotulus glycolicus DSM
           8271]
 gi|324965389|gb|ADY56168.1| tyrosine recombinase XerD subunit [Syntrophobotulus glycolicus DSM
           8271]
          Length = 315

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 96/318 (30%), Positives = 152/318 (47%), Gaps = 17/318 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             +++  L+IERGLS  T QSY  D ++ LI+L            + Q    ++ +F+  
Sbjct: 6   LDDYINYLKIERGLSGNTCQSYRRDLKKLLIYLEENQ------NNLFQCQPVDLFSFLYS 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q I  RS+ R  + +K F  YL      T+     +   K    LP  L+E    +L
Sbjct: 60  VNEQGISARSIARYTAALKGFFSYLSDEGKRTDDPTELIVVPKLEQPLPHVLSESAVNSL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +++     S     ++ R++AIL +LYG GLR+SE ++L+   I  +   +R +GKG+K 
Sbjct: 120 INHRDDKESQAGMLLEIRDTAILEVLYGSGLRVSELITLSLNQISLEVGYVRCRGKGNKE 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-------LFRGIRGKPLNPGVFQRYIRQL 250
           RIVPL      A+ +Y       L    + P       LF   RG  L        ++  
Sbjct: 180 RIVPLSEPCLLALQKYLLEARNHLLRKNRKPTTAESNSLFLNARGGRLTRQGIWTILKNR 239

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                       H +RH FATHLL +G DLRS+Q +LGH  +STTQIYT++      + +
Sbjct: 240 AVKNKAGAKIYPHLMRHCFATHLLDHGADLRSVQEMLGHADISTTQIYTHLT----KNRL 295

Query: 311 MEIYDQTHPSITQKDKKN 328
            +++++ HP   +  +KN
Sbjct: 296 RDVFEKAHPRAKRGGQKN 313


>gi|333000719|gb|EGK20294.1| tyrosine recombinase XerD [Shigella flexneri K-272]
 gi|333015225|gb|EGK34567.1| tyrosine recombinase XerD [Shigella flexneri K-227]
          Length = 298

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 150/309 (48%), Gaps = 17/309 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L  L +E+ L++ TL +Y  D    + +L           T+      +++A 
Sbjct: 5   LTRIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG------LTLATAQSDDLQAL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R        S  R LS ++   +YL + K   +    ++ + K    LP+ L+E Q 
Sbjct: 59  LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+   L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG
Sbjct: 119 ERLLQAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTISDISLRQGVVRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y     P+ LN      LF   R + +    F   I+     
Sbjct: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHPSI 321
           ++ Q HP  
Sbjct: 290 LHQQHHPRA 298


>gi|301063905|ref|ZP_07204380.1| tyrosine recombinase XerC [delta proteobacterium NaphS2]
 gi|300441980|gb|EFK06270.1| tyrosine recombinase XerC [delta proteobacterium NaphS2]
          Length = 329

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 96/315 (30%), Positives = 158/315 (50%), Gaps = 18/315 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIF----LAFYTEEKITIQTIRQLSYT 69
           L +  + +++ L  E+G SK T ++Y  D  QF  F    +A   +E     +I ++   
Sbjct: 23  LEEGIKRFIRYLHDEKGYSKHTQRNYRVDLEQFASFVAREMALPLKETDLDFSIEEIESK 82

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            IR F+      K+   ++ R LS ++SF  +L+K ++   +    +++ K    +P  L
Sbjct: 83  TIRKFVGSLY-GKLKRTTIARKLSAVRSFFLFLEKEELIKTNPAGELQSPKLEKYIPSHL 141

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              +   L+D       +  + +  R+ AIL +LY CG+R++E   +   +I  DQ  ++
Sbjct: 142 PVDEVFRLMD-----LPNRERSLGLRDLAILEVLYSCGIRVAELAGMNVSSIDHDQRLVK 196

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQR 245
           + GKG+K R+VP+     KA+  Y      D           PL    RG  L      R
Sbjct: 197 VTGKGNKERLVPIGRQALKAVKAYLAATDEDRRRAALRGEGEPLIMNFRGGRLTTRSIGR 256

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +++     GL    + H++RH+FATH+L  G DLRS+Q +LGH  LSTTQ YT+V+   
Sbjct: 257 IVKKYAGAGGLTEDISPHSMRHTFATHMLDGGADLRSVQELLGHKSLSTTQKYTHVS--- 313

Query: 306 GGDWMMEIYDQTHPS 320
             D +ME+YD+THP 
Sbjct: 314 -LDRLMEVYDKTHPR 327


>gi|28899755|ref|NP_799360.1| site-specific tyrosine recombinase XerC [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153838746|ref|ZP_01991413.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ3810]
 gi|260878123|ref|ZP_05890478.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AN-5034]
 gi|260895820|ref|ZP_05904316.1| tyrosine recombinase XerC [Vibrio parahaemolyticus Peru-466]
 gi|260900847|ref|ZP_05909242.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ4037]
 gi|81726659|sp|Q87KJ6|XERC_VIBPA RecName: Full=Tyrosine recombinase xerC
 gi|28808007|dbj|BAC61244.1| integrase/recombinase XerC [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747832|gb|EDM58716.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ3810]
 gi|308087191|gb|EFO36886.1| tyrosine recombinase XerC [Vibrio parahaemolyticus Peru-466]
 gi|308092778|gb|EFO42473.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AN-5034]
 gi|308110579|gb|EFO48119.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ4037]
          Length = 310

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 83/312 (26%), Positives = 154/312 (49%), Gaps = 16/312 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L K  + + + L  E+GLS  T ++Y+         LA     ++ ++   Q+    +R 
Sbjct: 13  LQKPLERFYEFLRSEKGLSLHTQRNYKQQLETMAQHLA-----EMGLKDWSQVDAGWVRQ 67

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
              K   + +   SL   LS ++SF  +L  R   + +    +   +K   LP+ L+  +
Sbjct: 68  LAGKGMREGMKASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDE 127

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++       +E   +  R+ A++ L+YG GLR++E +S+  +++      LR+ GK
Sbjct: 128 VNQLLEV------NEDDPLAIRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVIGK 181

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GDK R VP      + + ++  +   DL    +  LF    G  ++    Q+ + +  + 
Sbjct: 182 GDKERKVPFSGMATEWVGKWLRVR-GDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQK 240

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ ++    + + 
Sbjct: 241 QSVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQH----LAQA 296

Query: 314 YDQTHPSITQKD 325
           YDQ HP   +K+
Sbjct: 297 YDQAHPRARKKN 308


>gi|56414990|ref|YP_152065.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363919|ref|YP_002143556.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56129247|gb|AAV78753.1| site-specific integrase/recombinase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095396|emb|CAR60955.1| site-specific integrase/recombinase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 298

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 150/309 (48%), Gaps = 17/309 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L  L +ER L++ TL +Y  D    + +L          +T+      +++  
Sbjct: 5   LARIEQFLDALWLERDLAENTLSAYRRDLSMVVAWLHHRG------KTLATAQADDLQTL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R        S  R LS ++ F ++L + K   +     + + K    LP+ L+E Q 
Sbjct: 59  LAERVEGGYKATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEVQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+   L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG
Sbjct: 119 ERLLQAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y     P+ LN      LF   R + +    F   I+     
Sbjct: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHPSI 321
           ++ Q HP  
Sbjct: 290 LHQQHHPRA 298


>gi|261342297|ref|ZP_05970155.1| tyrosine recombinase XerD [Enterobacter cancerogenus ATCC 35316]
 gi|288315638|gb|EFC54576.1| tyrosine recombinase XerD [Enterobacter cancerogenus ATCC 35316]
          Length = 298

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 152/309 (49%), Gaps = 17/309 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L  L +E+ L++ TL +Y  D    + +L+          ++  + + +++A 
Sbjct: 5   LALVEQFLDALWLEKNLAENTLSAYRRDLTMLVEWLSRRK------LSLETVQHDDLQAL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + +R        S  R LS ++   ++L + KI  +     + + K    LP+ L+E Q 
Sbjct: 59  LGERVDGGYKATSSARLLSAMRRLFQHLFREKIRADDPSALLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+ +  +        ++ R+ A+L LLY  GLR+SE + LT  +I   Q  +R+ GKG
Sbjct: 119 ERLLQSPAVDLP-----LELRDKAMLELLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y     P+ LN      LF   R + +    F   I+     
Sbjct: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYATL 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHPSI 321
           ++ Q HP  
Sbjct: 290 LHQQHHPRA 298


>gi|269956359|ref|YP_003326148.1| tyrosine recombinase XerD [Xylanimonas cellulosilytica DSM 15894]
 gi|269305040|gb|ACZ30590.1| tyrosine recombinase XerD [Xylanimonas cellulosilytica DSM 15894]
          Length = 331

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 96/345 (27%), Positives = 151/345 (43%), Gaps = 37/345 (10%)

Query: 1   MEGNNLPE--IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI 58
           M     P   +VS  L     ++L +L +ERGLS  T  +Y  D  +++  L     E++
Sbjct: 1   MSSTVAPPGVVVSGPLEAALDDYLAHLRVERGLSHNTTAAYRRDLARYVRHL-----ERL 55

Query: 59  TIQTIRQLSYTEIRAFISKRRTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNI 113
              ++  +   ++  F++  R       ++   S  R+L+ ++ + ++     + T+   
Sbjct: 56  GRTSLGAVREDDVTGFVTAVREGADGGARLSASSTARALAAVRGWHRFAHAEGLATQDPA 115

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
             +R   +   LP AL+      L+D            +  R+ A+L LLY  G RISE 
Sbjct: 116 AEVRAPTQLRRLPHALSVDAVTRLLD----AAGVGDGPVPLRDRALLELLYSTGGRISEV 171

Query: 174 LSLTPQN--------------IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           + L                    D  + +R+ GKGDK RIVP+      A+  Y      
Sbjct: 172 VGLDVDALGWLGAGSAPGDGAGDDGPAVVRLHGKGDKQRIVPVGSYAIAALDAYLVRARP 231

Query: 220 DLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            L         LF   RG+PL+       ++      GL  + + HTLRHSFATHLL  G
Sbjct: 232 ALAAAGSGTPALFLNTRGRPLSRQSAWAVLQAASARAGLE-NVSPHTLRHSFATHLLQGG 290

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
            D+R +Q +LGH  ++TTQIYT V      D + E+Y  THP   
Sbjct: 291 ADVRVVQELLGHASVTTTQIYTMVTP----DTLREVYAATHPRAR 331


>gi|69248064|ref|ZP_00604609.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus
           faecium DO]
 gi|68194583|gb|EAN09074.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus
           faecium DO]
          Length = 284

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 98/298 (32%), Positives = 156/298 (52%), Gaps = 15/298 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           + IERGLS  T QSYE D  Q+L FL     ++  I + + +    +  F+ K   +K  
Sbjct: 1   MNIERGLSANTRQSYERDLEQYLHFL-----QEQKIASWQDVDRFLVIRFLEKLHEEKKA 55

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             ++ R +S ++ F ++L++ +IT    + ++   KK+  LP  L   +   L++     
Sbjct: 56  TATVTRMISSLRRFHQFLRQERITDHDPMQHIDTPKKAQKLPSTLTLTEVEKLIE----- 110

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
               TK +  R+ AIL ++Y  G+R+SE + L   ++      ++  GKGDK RI+PL  
Sbjct: 111 APDTTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGKGDKERIIPLGD 170

Query: 205 SVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              + +  Y D     L  +  ++ +F    GK L+     + ++QL R  G+    T H
Sbjct: 171 YAIQWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVREAGIYKEVTPH 230

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           TLRHSFATHLL NG DLR++Q +LGH  +STTQIYT++  K     M ++Y Q  P  
Sbjct: 231 TLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR----MTDVYKQHFPRA 284


>gi|157960633|ref|YP_001500667.1| tyrosine recombinase XerD [Shewanella pealeana ATCC 700345]
 gi|157845633|gb|ABV86132.1| tyrosine recombinase XerD [Shewanella pealeana ATCC 700345]
          Length = 300

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 92/301 (30%), Positives = 146/301 (48%), Gaps = 16/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L   +GLS  TL +Y  D R    +L    ++ +T          +IR ++++R  
Sbjct: 14  FLDDLWSTKGLSDNTLSAYRTDLRHLDRYLQKQGDDLVTCSQF------DIRNYLAERFD 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     S  R +S ++ F  YL  +K      +  + + K +  LP +L+E+    L+  
Sbjct: 68  KGFAKTSSARMMSSLRRFYGYLIVKKQIDSDPMALIESPKLARKLPDSLSEEDIDRLL-- 125

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                  +   I++R+ A+L LLY  GLR+SE + LT + +   Q  +RI GKG K R+V
Sbjct: 126 ---AEPEQDDPIESRDKAMLELLYATGLRVSELVGLTMEQLSLRQGLVRITGKGGKERLV 182

Query: 201 PLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           PL       I  Y      +L        LF   R + +    F   I+      G+   
Sbjct: 183 PLGELAITEIESYLKFARAELLKGKQSDVLFPSKRAQQMTRQTFWHRIKLYALRAGISTE 242

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V +      +  ++ + HP
Sbjct: 243 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATAR----LASLHSEHHP 298

Query: 320 S 320
            
Sbjct: 299 R 299


>gi|298529953|ref|ZP_07017355.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509327|gb|EFI33231.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 312

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 109/317 (34%), Positives = 171/317 (53%), Gaps = 12/317 (3%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++  L  E   +L +L++E+G S  TLQ+Y  D  Q+  FL    +   T  + + +   
Sbjct: 4   IADSLPDEATAFLAHLDVEKGFSGATLQAYSKDLLQWEEFLQTRNK---TCASPQDIVRA 60

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++ AF+ +     +   S+ R LS +++F ++L+K+KI  ++    +RN K+    P  L
Sbjct: 61  DVHAFLVQMHKLNLSKSSMARKLSSLRTFFRFLQKQKIIQQNPCTGVRNPKQEKPQPGVL 120

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           N  QAL +V   L  +   T+     + A+  +LYG GLR+SEALSL   ++   QS +R
Sbjct: 121 NVDQALEMVQAQLEPSPRNTR-----DLALAEVLYGSGLRVSEALSLDLDDVDQGQSLVR 175

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           +QGKG K R+  L     + + +Y  L         +  LF G+RG  L+     R I++
Sbjct: 176 VQGKGRKERLAFLTRPGLERLSQYIALRHAFEPDLREKALFLGMRGGRLHRREAVRIIQR 235

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           L +        + HTLRHSFATH+L  G DLR +Q +LGH R+STTQ YT++N     D 
Sbjct: 236 LGQIFARAQGVSPHTLRHSFATHMLQAGADLRIVQELLGHSRISTTQRYTHLN----LDQ 291

Query: 310 MMEIYDQTHPSITQKDK 326
           +M+ YD+ HP   +KDK
Sbjct: 292 VMQTYDKAHPLAREKDK 308


>gi|322691424|ref|YP_004220994.1| recombinase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320456280|dbj|BAJ66902.1| recombinase [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 311

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 86/310 (27%), Positives = 145/310 (46%), Gaps = 17/310 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L ++ +ERGL+  T+ +YE D  +++ +L     E   I     ++  ++  +I+  
Sbjct: 13  EQFLVHIGVERGLATATVTAYESDIAKYIDWL-----ETRGIHEPDAITKQDVEDYIAAL 67

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  RS  R L+ I  F ++   +   T      ++  K +++LP  L   +   L+
Sbjct: 68  DQAGESARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLL 127

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D         T  +  R+ A+L  +Y  G R+SEA      +I  D+   R+ GKG K R
Sbjct: 128 DA--AAAGGSTDPVVLRDKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQR 185

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL------PLFRGIRGKPLNPGVFQRYIRQLRR 252
           +VPL     +AI  Y +    +L             LF   RGK ++       ++    
Sbjct: 186 LVPLGSYACRAITAYLNAGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGE 245

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+      HTLRHSFATHL+  G D+R++Q +LGH  ++TTQIYT+V+ +     ++E
Sbjct: 246 RAGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPET----LIE 301

Query: 313 IYDQTHPSIT 322
            Y  +HP   
Sbjct: 302 TYLTSHPRAR 311


>gi|167627279|ref|YP_001677779.1| site-specific recombinase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597280|gb|ABZ87278.1| site-specific recombinase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 292

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 145/308 (47%), Gaps = 18/308 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +      +L NL +E GLS+ T+ SY  D +    + +           +  L + ++ A
Sbjct: 1   MSTAVDAFLDNLWLEHGLSQNTISSYRTDLKFLQSYFSQVE--------LINLDFEQLYA 52

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           FIS R       RS  R +S ++ F  +L      T +    +   K +  LP+ + E  
Sbjct: 53  FISYRSKNGYSSRSNARMISTLRKFYNWLISTGQATTNPTTKLTLPKLAKRLPKDMTEVD 112

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+          T  I  R+ A+L L+Y  GLR+SE + L   +I  +   +++ GK
Sbjct: 113 VERLL-----QAPDLTDDIGIRDKAMLELMYATGLRVSELVGLNTHDIDLNVGVIQVMGK 167

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K RIVP+     + + +Y++     L  N  +  +F     K +    F   I+    
Sbjct: 168 GSKERIVPIGEYALEYLHKYFEESRELLAKNFKEKAVFISKHSKRITRQSFWHRIKSYVL 227

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    + HTLRH+FATHLL++G DLRS+Q +LGH  +STT IYT+++       + E
Sbjct: 228 IAGINTDISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR----LQE 283

Query: 313 IYDQTHPS 320
           IY + HP 
Sbjct: 284 IYQKHHPR 291


>gi|260771236|ref|ZP_05880163.1| tyrosine recombinase XerD [Vibrio furnissii CIP 102972]
 gi|260613833|gb|EEX39025.1| tyrosine recombinase XerD [Vibrio furnissii CIP 102972]
 gi|315179158|gb|ADT86072.1| site-specific tyrosine recombinase XerD [Vibrio furnissii NCTC
           11218]
          Length = 302

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 90/306 (29%), Positives = 149/306 (48%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + +ERGLS+ TL SY  D  + L ++  +         +  +S + ++ + + 
Sbjct: 12  VEQFLDAMWMERGLSENTLMSYRNDLMKLLDWMQRHNYR------LDFISLSGLQEYQTW 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q     S  R LS I+   +YL + K+  +     + + K    LP+ L+E Q   L
Sbjct: 66  LVDQDYKQTSRARMLSAIRRLFQYLHREKMRADDPSALLISPKLPKRLPKDLSEAQVDAL 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +        +    I+ R+ A+L LLY  GLR++E +SLT +NI   Q  +R+ GKG K 
Sbjct: 126 L-----SAPNPDDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGKE 180

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +  + I  +        L       +F   R + +    F   I+      G+
Sbjct: 181 RLVPMGENAIEWIETFLAQGRSHLLGEQTSDVVFPSKRAQQMTRQTFWHRIKHYAVIAGI 240

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 241 DVDKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHS 296

Query: 316 QTHPSI 321
           + HP  
Sbjct: 297 EHHPRA 302


>gi|331654392|ref|ZP_08355392.1| tyrosine recombinase XerD [Escherichia coli M718]
 gi|331047774|gb|EGI19851.1| tyrosine recombinase XerD [Escherichia coli M718]
          Length = 298

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 150/309 (48%), Gaps = 17/309 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L  L +E+ L++ TL +Y  D    + +L           T+      +++A 
Sbjct: 5   LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG------LTLATAQCDDLQAL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R        S  R LS ++   +YL + K   +    ++ + K    LP+ L+E Q 
Sbjct: 59  LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+   L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG
Sbjct: 119 ERLLQAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y     P+ LN      LF   R + +    F   I+     
Sbjct: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHPSI 321
           ++ Q HP  
Sbjct: 290 LHQQHHPRA 298


>gi|167763873|ref|ZP_02436000.1| hypothetical protein BACSTE_02254 [Bacteroides stercoris ATCC
           43183]
 gi|167697989|gb|EDS14568.1| hypothetical protein BACSTE_02254 [Bacteroides stercoris ATCC
           43183]
          Length = 316

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 90/312 (28%), Positives = 149/312 (47%), Gaps = 16/312 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + Q L++E+ LS  TL +Y  D ++ L FL     E      I  ++  +++ F + 
Sbjct: 17  IRKYQQYLKLEKALSPNTLDAYMTDLQKLLHFLEGENIE------IPDVTPDDLQRFAAG 70

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I  RS  R LSGIKSF  +L             +   K    LP  L  ++   +
Sbjct: 71  LHDIGIHPRSQARILSGIKSFFHFLVIADYQEADPSELLEGPKIGFRLPEVLTVEEIDRI 130

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +      T    K    RN AIL  LY CGLR+SE  +L   ++  ++  ++++GKG K 
Sbjct: 131 I-----STVDMEKKEGQRNRAILETLYSCGLRVSELCNLKISDLYFEEGFIKVEGKGGKQ 185

Query: 198 RIVPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+ P   K I  ++       +    +  +F    G  ++  +    I++L    G+
Sbjct: 186 RLVPISPRAIKEIKYWFADRNLGKIKKGYEDYVFLARWGNNISRIMVFHMIKELAEKAGI 245

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++       ++E    
Sbjct: 246 TKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNRLRSEIIE---- 301

Query: 317 THPSITQKDKKN 328
            HP   +  K++
Sbjct: 302 HHPRNIKYRKEH 313


>gi|309793966|ref|ZP_07688391.1| tyrosine recombinase XerD [Escherichia coli MS 145-7]
 gi|308122373|gb|EFO59635.1| tyrosine recombinase XerD [Escherichia coli MS 145-7]
          Length = 298

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 149/309 (48%), Gaps = 17/309 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L  L +E+ L++ TL +Y  D    + +L           T+      +++A 
Sbjct: 5   LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG------LTLATAQSDDLQAL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R        S  R LS ++   +YL + K   +    ++ + K    LP+ L+E Q 
Sbjct: 59  LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+   L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG
Sbjct: 119 ERLLQAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+V L       +  Y     P+ LN      LF   R + +    F   I+     
Sbjct: 174 NKERLVSLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHPSI 321
           ++ Q HP  
Sbjct: 290 LHQQHHPRA 298


>gi|296330829|ref|ZP_06873304.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674347|ref|YP_003866019.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296151834|gb|EFG92708.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412591|gb|ADM37710.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 304

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 154/308 (50%), Gaps = 17/308 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +++ L+IE+  S+ T+ +Y     +F  FL         I    +  Y + R F+++   
Sbjct: 11  FVEYLQIEKNYSQYTIVNYVDSIEEFETFLRVQ-----GINGFEKAVYQDTRIFLTEAYE 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  R++ + +S ++SF K+L + K+  E+    +   K+   +P+ L +K+   L + 
Sbjct: 66  KGLSRRTISKKISALRSFYKFLMREKLVEENPFQLVHLPKQEKRIPKFLYQKELEELFE- 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                S  ++    R+ A+L LLY  G+R+SE  S+T  ++     T+ + GKG K R +
Sbjct: 125 ----VSDISQPTGMRDQALLELLYATGMRVSECCSITVNDVDLFMDTVLVHGKGKKQRYI 180

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           P     R+A+  Y +     L +  + P   LF   RG PL     +  +  L +     
Sbjct: 181 PFGSYAREALKVYMNSGRQCLLMKAKEPHDLLFVNQRGGPLTARGIRHILSGLVQKASGT 240

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           L    H LRH+FATHLL+ G DLRS+Q +LGH  LS+TQIYT+V+ +     +   Y   
Sbjct: 241 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKE----MLRNTYMSH 296

Query: 318 HPSITQKD 325
           HP   +K+
Sbjct: 297 HPRAFKKN 304


>gi|146313613|ref|YP_001178687.1| site-specific tyrosine recombinase XerC [Enterobacter sp. 638]
 gi|145320489|gb|ABP62636.1| tyrosine recombinase XerC subunit [Enterobacter sp. 638]
          Length = 300

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 88/315 (27%), Positives = 149/315 (47%), Gaps = 17/315 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +    L      +L+ L IER LS +TL +Y+      +        E+I +++      
Sbjct: 1   MTDAPLSSFVARFLRYLGIERQLSPITLLNYQRQLDAIMQ-----LAEEIGLKSWPLCDA 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +RA + + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ 
Sbjct: 56  ATVRALVVRSRRKGLGPASLALRLSALRSFFDWLVSQGELNANPAKGISTPKAPRHLPKN 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++      L++  L         +  R+ A+L ++YG GLR+SE ++L  +++  D   +
Sbjct: 116 IDVDDVNRLLNIDL------NDPLAVRDRAMLEVMYGAGLRLSELVNLDLKHLDLDTGEV 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +P+  +    I  + DL    L    +  LF    GK ++    Q+   
Sbjct: 170 WVMGKGSKERRLPIGRNAVAWIEHWLDLRG--LFGAEENALFLSKLGKRISARNVQKRFA 227

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++   
Sbjct: 228 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 284

Query: 309 WMMEIYDQTHPSITQ 323
            +  +YD  HP   +
Sbjct: 285 -LASVYDSAHPRAKR 298


>gi|323173892|gb|EFZ59521.1| tyrosine recombinase XerD [Escherichia coli LT-68]
          Length = 298

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 150/309 (48%), Gaps = 17/309 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L  L +E+ L++ TL +Y  D    + +L           T+      +++A 
Sbjct: 5   LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG------LTLATAQSDDLQAL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R        S  R LS ++   +YL + K   +    ++ + K    LP+ L+E Q 
Sbjct: 59  LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+   L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG
Sbjct: 119 ERLLQAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y     P+ LN      LF   R + +    F   I+     
Sbjct: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNCVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHPSI 321
           ++ Q HP  
Sbjct: 290 LHQQHHPRA 298


>gi|118578727|ref|YP_899977.1| tyrosine recombinase XerC [Pelobacter propionicus DSM 2379]
 gi|166918893|sp|A1AKP9|XERC_PELPD RecName: Full=Tyrosine recombinase xerC
 gi|118501437|gb|ABK97919.1| tyrosine recombinase XerC [Pelobacter propionicus DSM 2379]
          Length = 302

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 108/309 (34%), Positives = 157/309 (50%), Gaps = 16/309 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L+++ + +  +LE ER LS  TL +Y+ D RQF  F+A    +  T + +  L    +R 
Sbjct: 4   LMEQIRAFRLHLETERNLSPHTLAAYDRDLRQFAAFVAAEMGDSATAEDVDHL---LLRR 60

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++++  TQ I   S  R L+ I+SF ++L +    + +    +   K+   LP  L+  Q
Sbjct: 61  YLAQLGTQ-IRKSSQGRKLAAIRSFYRHLLRLGSVSRNPAELIATPKREQRLPFHLDIDQ 119

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           A  L++     T  E +    R+ AIL  LY  GLR+SE   L  ++I      LR+ GK
Sbjct: 120 ATALME-----TPTEEENYGLRDRAILETLYSSGLRVSELTGLAIRDINLAGGMLRVMGK 174

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K RIVPL     +AI EY D            PLF   RG  +N     R +      
Sbjct: 175 GGKERIVPLGSRAVRAIQEYLDSRG---GGTATAPLFLNSRGDRINRRSVARIVDAHVHE 231

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +      + HTLRH+FATH+L  G DLR+IQ +LGH  LSTTQ YT+V+     D +ME+
Sbjct: 232 IAAFKHISPHTLRHTFATHMLEGGADLRAIQELLGHASLSTTQKYTHVS----LDRLMEV 287

Query: 314 YDQTHPSIT 322
           YD+ HP   
Sbjct: 288 YDKAHPKAR 296


>gi|257791851|ref|YP_003182457.1| tyrosine recombinase XerD [Eggerthella lenta DSM 2243]
 gi|257475748|gb|ACV56068.1| tyrosine recombinase XerD [Eggerthella lenta DSM 2243]
          Length = 297

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 95/312 (30%), Positives = 154/312 (49%), Gaps = 18/312 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +  + +L  L +ERG S LT+ +Y  D + +  FL     EK  ++++  +    I A
Sbjct: 1   MDELYREYLAYLRVERGSSPLTVSAYAADLKDYAQFL-----EKRGVESLDDVDREVIVA 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           + S    +     ++ R +S +K F ++L +      +    ++  K  + LP  L+  Q
Sbjct: 56  YESDLFGRGYAASTVDRHVSVLKGFHRFLVREGYARRNPADTIQLPKAPDRLPDVLSVAQ 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++   L     +   +  RN AIL +LYGCGLR+SE   L   + + ++  L I GK
Sbjct: 116 VDAMLSRPL-----DEGPLALRNRAILEVLYGCGLRVSECTGLDLGDAILEEGYLHILGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLN---LNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           G+K RI P+  +  +A+ +Y +    +L          +F   RG  L        + + 
Sbjct: 171 GNKERIAPISGAALRALRDYLERGRPELVRSYAKSTSAVFLNARGGRLTRQSVHSLVAEA 230

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            R++G+  +   HTLRHSFATH+L+ G DLR IQ ILGH  +STTQIYT+VN  +    +
Sbjct: 231 GRFIGVA-NLHPHTLRHSFATHMLAGGADLRVIQEILGHSDISTTQIYTHVNRTH----I 285

Query: 311 MEIYDQTHPSIT 322
            E Y   HP   
Sbjct: 286 REEYLSAHPRAK 297


>gi|257784281|ref|YP_003179498.1| tyrosine recombinase XerD [Atopobium parvulum DSM 20469]
 gi|257472788|gb|ACV50907.1| tyrosine recombinase XerD [Atopobium parvulum DSM 20469]
          Length = 302

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 94/307 (30%), Positives = 158/307 (51%), Gaps = 12/307 (3%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L + R  ++  + +ERGLS  TL +Y  D   +L +L+        I +  Q++ +++ 
Sbjct: 2   DLAQARTEYIAYVAVERGLSVNTLDAYTRDLEGYLFWLSGKK-----ITSPNQVTRSDVE 56

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            +I   R   +   S++R  + I++F K++   +I   S   ++    +   LP  ++++
Sbjct: 57  EYIGSLRDLGMAPASVERHTAAIRNFHKFMAVEQICESSPAEDLPTTARIQRLPDVISQE 116

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +A  L+D            +  R+ AIL LLYGCGLR+SE   L  + ++ +   LR+ G
Sbjct: 117 KAEELLDQ-----PFPNSPLGIRDKAILELLYGCGLRVSELCDLEVRGVLLEDELLRVFG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG K R+VP+L S  +A+  Y        L       +F   RG  ++     + +    
Sbjct: 172 KGSKERVVPVLGSAYRALKTYLFEARSLLLKHGQVSEVFVNARGGRISRQSVHKLVANYG 231

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R +G+      HTLRHSFATHLL  G DLRS+Q +LGH  +STTQ+YT+V+  +  D  +
Sbjct: 232 RVVGIE-GLHPHTLRHSFATHLLEGGADLRSVQELLGHVDISTTQLYTHVDRSHIRDVYL 290

Query: 312 EIYDQTH 318
           E + + H
Sbjct: 291 EAHPRAH 297


>gi|219871550|ref|YP_002475925.1| site-specific tyrosine recombinase XerD [Haemophilus parasuis
           SH0165]
 gi|219691754|gb|ACL32977.1| site-specific tyrosine recombinase XerD [Haemophilus parasuis
           SH0165]
          Length = 297

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 95/309 (30%), Positives = 151/309 (48%), Gaps = 18/309 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L    + +L  L  E+GLS+ T+ SY  D   F  +L+             ++ Y +++ 
Sbjct: 4   LDPIIEQFLDTLWQEQGLSENTVASYRLDLESFTQWLSE-------PNAFLKVDYVDLQT 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+ +R  Q     S  R LS ++ F ++L   K   +     + + +K   LP++L+E+Q
Sbjct: 57  FLGERLEQGYKATSSSRMLSCLRKFFRFLYLEKYRDDDPTATLTSPRKPAHLPKSLSEEQ 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
            L L+     +  +    ++ R+ A+L LLY  GLR++E +SLT  N+   Q  +RI GK
Sbjct: 117 VLDLL-----NIPNTQDPLELRDKAMLELLYATGLRVTELVSLTLDNLSLRQGLVRIIGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           GDK R+VPL       I +++       LN      +F    G  +    F   I+    
Sbjct: 172 GDKERLVPLGEEASYWIQQFFEYGRSSLLNGMQSDVVFPSRLGNQMTRQTFWHRIKHYAL 231

Query: 253 YLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             G+     + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT V        + 
Sbjct: 232 LAGIDSNKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTQV----AKTRLK 287

Query: 312 EIYDQTHPS 320
            ++ Q HP 
Sbjct: 288 SLHQQFHPR 296


>gi|119964153|ref|YP_947420.1| tyrosine recombinase XerD [Arthrobacter aurescens TC1]
 gi|119951012|gb|ABM09923.1| tyrosine recombinase XerD [Arthrobacter aurescens TC1]
          Length = 319

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 85/318 (26%), Positives = 142/318 (44%), Gaps = 26/318 (8%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +   ++LQ++ +ERGL+  TL +Y  D  ++  FLA    E+        ++   + AF+
Sbjct: 14  RAITDYLQHVGVERGLAANTLSAYRRDLARYSNFLAAQGVEQPG-----SITRHHVTAFV 68

Query: 76  SKRRTQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
                       +G RS  R++  ++   K+      TT     ++        LP+A++
Sbjct: 69  QALSDGSDGAAALGVRSAARTVVAVRGLHKFWALEGTTTADPASDVHPPMPGKRLPKAIS 128

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-----DQ 185
             +   +++      +        R+ A+L  LY  G RISEA+ L   ++       D 
Sbjct: 129 VGEVTRILE-----AAGSDTATGLRDRALLEFLYSTGARISEAVGLDVDDVSLEDTGGDP 183

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVF 243
           + +R+ GKG K R+VPL     +A+  Y       L    +    LF   RG  ++    
Sbjct: 184 AIVRLFGKGSKERLVPLGSFGARAVGAYVVRGRPLLASKGKGTPALFLNARGGRISRQSA 243

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              ++       +    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQ+YT V  
Sbjct: 244 WTILKTAAEKANITKDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVT- 302

Query: 304 KNGGDWMMEIYDQTHPSI 321
               D + E+Y   HP  
Sbjct: 303 ---ADTLREVYAAAHPRA 317


>gi|253997434|ref|YP_003049498.1| tyrosine recombinase XerD [Methylotenera mobilis JLW8]
 gi|253984113|gb|ACT48971.1| tyrosine recombinase XerD [Methylotenera mobilis JLW8]
          Length = 302

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 89/312 (28%), Positives = 155/312 (49%), Gaps = 17/312 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++ E      ++L  + +E GLSK TL SY  D   F I+ +   ++ +TI         
Sbjct: 6   LAPEDAAAIDSFLDAIWLEDGLSKNTLDSYRLDLTAFAIWASSQHKQLLTI------DKA 59

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +++ +++ +       RS+ R ++ ++ F +Y  +  +      L + + K   SLP++L
Sbjct: 60  DVQQYLAVKFPLS-KPRSIGRLIASLRRFYRYNLRENLIAIDPTLQIESPKLPRSLPKSL 118

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           NE++ + L+     +  +    +  R+ A+L LLY  GLR+SE +S+    +    S +R
Sbjct: 119 NEEEVMALL-----NAPNVDDVVGLRDKAMLELLYASGLRVSELVSIKTSEVSMSDSVVR 173

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           + GKG K R+VP+  +  + I  Y        L   +   LF   RG  +    F   I+
Sbjct: 174 VTGKGSKTRLVPMGENAVEWISHYLKAARPQILQNRLSDALFVTNRGDAMTRQTFWHMIK 233

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     G+    + H LRH+FATHLL++G DLR +Q +LGH  +STTQIYT V  +    
Sbjct: 234 RYALLAGITKHMSPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTYVARER--- 290

Query: 309 WMMEIYDQTHPS 320
            + +++   HP 
Sbjct: 291 -LKKLHAAHHPR 301


>gi|327395985|dbj|BAK13407.1| tyrosine recombinase XerC [Pantoea ananatis AJ13355]
          Length = 301

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 86/314 (27%), Positives = 150/314 (47%), Gaps = 17/314 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S  L +    +L++L++ER LS LTL SY       +        +++ I    QL   
Sbjct: 1   MSSVLQETVDGFLRHLKVERQLSPLTLSSYARQLAALVTIA-----DEMKISAWSQLDPA 55

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R+  ++ R   +   SL   LS ++SFL +   R +   +    +   +    LP+ +
Sbjct: 56  MVRSMAARSRRAGLAASSLALRLSALRSFLDWQVSRDMLAANPAKGIATPRNGRHLPKNI 115

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +      L++  L      T  +  R+  +L ++YG GLR+SE +++  +++  +   + 
Sbjct: 116 DVDDVNQLLEIDL------TDPLAIRDRTMLEVMYGGGLRLSELVNMDCRHVDLEAGEVW 169

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG K R VP+  +    I ++  L            LF   RG  ++    Q+   +
Sbjct: 170 VLGKGSKERRVPIGRTAVSWIQQWLPLRT--AFNPGDDALFLSSRGSRISARNVQKRFAE 227

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+      H LRHSFATHLL + GDLR++Q +LGH  LSTTQIYT+++ ++    
Sbjct: 228 WGIKQGISSHIHPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQH---- 283

Query: 310 MMEIYDQTHPSITQ 323
           +  +YD  HP   +
Sbjct: 284 LASVYDAAHPRAKR 297


>gi|262404865|ref|ZP_06081419.1| tyrosine recombinase XerC [Vibrio sp. RC586]
 gi|262348949|gb|EEY98088.1| tyrosine recombinase XerC [Vibrio sp. RC586]
          Length = 310

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 82/327 (25%), Positives = 159/327 (48%), Gaps = 17/327 (5%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+   L   +   L +  + +   L  E+GLS  T ++Y+        +LA     ++ +
Sbjct: 1   MKTEEL-TPLPNALAQPLERFYAYLHSEKGLSLYTQRNYKQQLETMARYLA-----QVGL 54

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            +  QL    +R  +   + Q +   S+   LS ++SFL +L  R     +    +   +
Sbjct: 55  TSWPQLDAAWVRQLVVLGKRQGMKASSISTRLSSLRSFLDFLILRGELQANPAKGVSAPR 114

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K   LP+ L+  +   L++        +   +  R+ AI+ L+YG GLR++E +S+  ++
Sbjct: 115 KQRPLPKNLDVDEMAQLLEVT------DDDPLSIRDRAIMELMYGSGLRLAELVSIDVKD 168

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           +      +R+ GKG+K R V      ++ +  +  L     N + +  LF    G  ++ 
Sbjct: 169 VNLRDGEIRVIGKGNKERKVWFAGQAQEWVGNWLKLRSQLANSD-ETALFVSKLGTRISH 227

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              Q+ + +  +   +    + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+
Sbjct: 228 RSVQKRMAEWGQKQAVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH 287

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKDKK 327
           ++ ++    + ++YDQ HP   +K+K 
Sbjct: 288 LDFQH----LAQVYDQAHPRARKKNKD 310


>gi|86148174|ref|ZP_01066472.1| tyrosine recombinase [Vibrio sp. MED222]
 gi|85834021|gb|EAQ52181.1| tyrosine recombinase [Vibrio sp. MED222]
          Length = 310

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 80/314 (25%), Positives = 154/314 (49%), Gaps = 16/314 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L K    + + L  E+GLS  T ++Y+         L       + ++   Q+    +R 
Sbjct: 13  LQKPLSRFYEYLRSEKGLSLHTQRNYKQQLETMAAHLVT-----LGLKDWSQVDAAWVRQ 67

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             SK   + +   S+   LS ++SF  +L  R   T +    +   +K   LP+ L+  +
Sbjct: 68  LASKGMREGMKASSIATRLSSLRSFFDFLVLRGEMTANPAKGVSAPRKQRPLPKNLDVDE 127

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D       +E   +  R+ A++ ++YG GLR++E + +  ++++  Q  +R+ GK
Sbjct: 128 VGQLLDV------NEDDPLSIRDRAMMEVMYGAGLRLAELVGINLKDVLGRQGEIRVIGK 181

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GDK R  P     ++ + ++  +   +L    +  LF    G  ++    Q+ + +  + 
Sbjct: 182 GDKERKAPFSGLAKEWVEKWLKVR-GELASPGEPALFVSKLGTRISHRSVQKRMEEWGKK 240

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    + H LRHSFATH+L +  +LR++Q +LGH  +STTQ+YT+++ ++    + + 
Sbjct: 241 QSVASHISPHKLRHSFATHVLESSQNLRAVQELLGHENISTTQVYTHLDFQH----LAQA 296

Query: 314 YDQTHPSITQKDKK 327
           YDQ HP   +K+K 
Sbjct: 297 YDQAHPRARKKNKD 310


>gi|221640000|ref|YP_002526262.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides
           KD131]
 gi|221160781|gb|ACM01761.1| Phage integrase family protein [Rhodobacter sphaeroides KD131]
          Length = 306

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 131/313 (41%), Positives = 181/313 (57%), Gaps = 10/313 (3%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
            +        + WL +     G S  T+++Y  D   +L FLA +  E   ++ +  + +
Sbjct: 4   AIPPAARDALEAWLTHQRAIEGASAHTIRAYTADVTGWLAFLAGHLGEGYGLKRLASVPH 63

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++RA+++  R + +G RSL RSLS ++ F  +L +R+    + +L+ R  K    LPR 
Sbjct: 64  ADLRAWMAHERARGLGARSLARSLSAVRQFTGWLAEREGVDATAVLSARGPKFRRKLPRP 123

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+E  A  L+  V    + +  WI AR+ A++ LLYGCGLRISEAL L        +  L
Sbjct: 124 LSEADAKALLSTVAEDAAED--WIRARDLAVVTLLYGCGLRISEALGLPGTAHPLPE-VL 180

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKGDK R+VP LP  R A+  Y  LCPFDL   +   LFRG RG PLNP +  R + 
Sbjct: 181 RITGKGDKERLVPSLPVARAAVARYAALCPFDLGSGV---LFRGARGGPLNPRLVARTME 237

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           + R  LGLP + T H LRHSFATHLL+ GGDLRSIQ +LGH  LSTTQ+YT V+    G 
Sbjct: 238 RARATLGLPPTATPHALRHSFATHLLNAGGDLRSIQELLGHASLSTTQVYTAVD----GA 293

Query: 309 WMMEIYDQTHPSI 321
            +ME+Y + HP  
Sbjct: 294 RLMEVYAKAHPRA 306


>gi|170018860|ref|YP_001723814.1| site-specific tyrosine recombinase XerD [Escherichia coli ATCC
           8739]
 gi|169753788|gb|ACA76487.1| tyrosine recombinase XerD [Escherichia coli ATCC 8739]
          Length = 298

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 150/309 (48%), Gaps = 17/309 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L  L +E+ L++ TL +Y  D    + +L           T+      +++A 
Sbjct: 5   LARIEQFLDALWLEKNLAENTLNAYCRDLSMMVEWLHHRG------LTLATAQSDDLQAL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R        S  R LS ++   +YL + K   +    ++ + K    LP+ L+E Q 
Sbjct: 59  LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+   L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG
Sbjct: 119 ERLLQAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y     P+ LN      LF   R + +    F   I+     
Sbjct: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHPSI 321
           ++ Q HP  
Sbjct: 290 LHQQHHPRA 298


>gi|326331272|ref|ZP_08197564.1| tyrosine recombinase XerD [Nocardioidaceae bacterium Broad-1]
 gi|325950905|gb|EGD42953.1| tyrosine recombinase XerD [Nocardioidaceae bacterium Broad-1]
          Length = 298

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 87/309 (28%), Positives = 143/309 (46%), Gaps = 19/309 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L +L +ERGL+  TL SY  D R++  FLA     +  +  +  +S   +  F++  
Sbjct: 2   RTYLDHLTVERGLAANTLSSYRRDLRRYAEFLA-----QQDVDDLTAVSEATVSGFLAHL 56

Query: 79  RTQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           R        +   S  R++  ++ F K+     +   +   +++  +    LP+AL    
Sbjct: 57  REGSEEHPALSATSAARTVVAVRGFHKFAVADGLVEANPAGHVKPPRAEKRLPKALPLSD 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              +++            +  R+ A+L +LYG G RISEA+ L   ++        ++GK
Sbjct: 117 VEAILE----AAGAPGTPLALRDRALLEVLYGTGARISEAVGLDVDDLDRVDHVALLRGK 172

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K RIVP+     +A+  Y      DL +      LF   RG  L+       + +   
Sbjct: 173 GGKERIVPVGSYAIEAVEAYLTRARPDLASARSGGALFLNARGGRLSRQSAWTVLTRAAE 232

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V      D + E
Sbjct: 233 RAGIDKDVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVT----VDNLRE 288

Query: 313 IYDQTHPSI 321
           ++   HP  
Sbjct: 289 VFATAHPRA 297


>gi|310816227|ref|YP_003964191.1| site-specific tyrosine recombinase XerC [Ketogulonicigenium vulgare
           Y25]
 gi|308754962|gb|ADO42891.1| site-specific tyrosine recombinase XerC [Ketogulonicigenium vulgare
           Y25]
          Length = 307

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 126/316 (39%), Positives = 178/316 (56%), Gaps = 9/316 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++S  L      WL +     G +  TL +Y  D   FL F+  +         I Q+  
Sbjct: 1   MISAALADALDRWLVHSGAIEGKAGATLVAYRHDVSTFLTFMTLHHGGPQGFAAIAQIEV 60

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++RA++++ R   +  RSL R+LS +K F  +L  R+    + +L  R  K   +LPR 
Sbjct: 61  ADMRAWMAQMRGTGLSSRSLARALSAVKGFYTWLAAREGFEPTAVLAARAPKFQRNLPRP 120

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L    A  L+D V + ++    W+ AR+ A++ LLYG GLRISEALSLT ++       L
Sbjct: 121 LEVDDARRLMDRVEVQSNEP--WVAARDLAVITLLYGSGLRISEALSLTGEDYPL-PDVL 177

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R+ GKG K R+VP+LP    A+ +Y    P+        PLFRG+RG  L+P + Q+ I 
Sbjct: 178 RMTGKGGKQRLVPVLPIAAAAVKDYVRRTPYAPVAGA--PLFRGVRGGALSPRIIQKMIE 235

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           Q+R  LGLP S T H LRHSFATHLL+ GGDLRSIQ +LGH  LSTTQ YT V++ +   
Sbjct: 236 QVRLQLGLPASATPHALRHSFATHLLAAGGDLRSIQELLGHASLSTTQAYTAVDAAH--- 292

Query: 309 WMMEIYDQTHPSITQK 324
            +M+IYD+ HP    +
Sbjct: 293 -LMQIYDRAHPRARSE 307


>gi|254000090|ref|YP_003052153.1| tyrosine recombinase XerD [Methylovorus sp. SIP3-4]
 gi|253986769|gb|ACT51626.1| tyrosine recombinase XerD [Methylovorus sp. SIP3-4]
          Length = 298

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 89/312 (28%), Positives = 153/312 (49%), Gaps = 16/312 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S        +++ +L +E GL++ TL+SY  D   F  +L     +      + Q    
Sbjct: 1   MSAANAALLDSFVDHLWLEDGLARNTLESYRRDLALFADWLWSEHAKL-----LNQADQG 55

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +++ +++ R       RS+ R ++ ++ F +Y  +    +    L +   K   SLP++L
Sbjct: 56  DLQQYLAFRFPTS-KPRSVSRLIASLRRFYRYGLREGQVSVDPTLLIDTPKLPRSLPKSL 114

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           NE + + L+     +     + I  R+ A+L  LY CGLR+SE + L    +  ++  +R
Sbjct: 115 NEDEVVALL-----NAPDIAQAIGLRDRAMLETLYACGLRVSELVGLRYTEVSLNEGVVR 169

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           + GKG K R+VPL       +L Y     P  L   +   LF   RG+ +    F   I+
Sbjct: 170 VTGKGSKTRLVPLGEESVDWLLRYVREGRPQILQQRVSDSLFVTQRGEAMTRQAFWYLIK 229

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     G+    + H LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +    
Sbjct: 230 RYALQAGIHKPLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARER--- 286

Query: 309 WMMEIYDQTHPS 320
            + +++   HP 
Sbjct: 287 -LKQLHAMHHPR 297


>gi|157162354|ref|YP_001459672.1| site-specific tyrosine recombinase XerD [Escherichia coli HS]
 gi|157068034|gb|ABV07289.1| tyrosine recombinase XerD [Escherichia coli HS]
          Length = 298

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 91/308 (29%), Positives = 150/308 (48%), Gaps = 17/308 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L  L +E+ L++ TL +Y  D    + +L           T+      +++A 
Sbjct: 5   LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG------LTLATAQSDDLQAL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R        S  R LS ++   +YL + K   +    ++ + K    LP+ L+E Q 
Sbjct: 59  LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+   L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG
Sbjct: 119 ERLLQAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y     P+ LN      LF   R + +    F   I+     
Sbjct: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHPS 320
           ++ Q HP 
Sbjct: 290 LHQQHHPR 297


>gi|260596035|ref|YP_003208606.1| site-specific tyrosine recombinase XerC [Cronobacter turicensis
           z3032]
 gi|260215212|emb|CBA27069.1| Tyrosine recombinase xerC [Cronobacter turicensis z3032]
          Length = 306

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 87/315 (27%), Positives = 148/315 (46%), Gaps = 17/315 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +    L      +L+ L++ER LS +TL +YE   RQ    +    E    +++  Q   
Sbjct: 6   MTDSPLHPPIARFLRYLKVERQLSPVTLLNYE---RQLAAIVGLAGE--AGLKSWAQCDA 60

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R    + R   +G  SL   LS ++SF  +   +     +    +   K    LP+ 
Sbjct: 61  AMVRTLAVRSRRAGLGPSSLALRLSALRSFFDWQVSQGELKANPAKGVSTPKTPRHLPKN 120

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++      L+D  L         +  R+ A+L ++YG GLR+SE +++  +++      +
Sbjct: 121 IDVDDVNRLLDIDL------NDPLAVRDRAMLEIMYGAGLRLSELVNIDCRHLDLASGEV 174

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +P+  S    I  + +L   +L       LF   +GK ++    Q+   
Sbjct: 175 WVMGKGSKERRLPIGRSAVAWIDHWLNLR--ELFGPDDDALFLSKQGKRISARNVQKRFA 232

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GL      H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++   
Sbjct: 233 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH--- 289

Query: 309 WMMEIYDQTHPSITQ 323
            +  +YD  HP   +
Sbjct: 290 -LASVYDAAHPRARR 303


>gi|89072532|ref|ZP_01159104.1| tyrosine recombinase [Photobacterium sp. SKA34]
 gi|89051636|gb|EAR57089.1| tyrosine recombinase [Photobacterium sp. SKA34]
          Length = 298

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 92/306 (30%), Positives = 151/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + +ERGLS+ TL SY  D  + L +L   +   I+      +S  +++ +   
Sbjct: 8   IERFLDAMWMERGLSENTLSSYRNDLTKLLRWLKQESRNVIS------VSVDDLQRYQQW 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S  R +S I+   +YL + K+  +   + +   K    LP+ L+E Q   L
Sbjct: 62  LFDKDYKQTSRARMVSAIRRLFQYLHREKMRDDDPSVMLVTPKLPKRLPKDLSEAQVDAL 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++            I+ R+ A+L LLY  GLR++E ++LT +NI   Q  +RI GKGDK 
Sbjct: 122 LE-----APDVNDPIELRDKAMLELLYATGLRVTELVTLTMENISLRQGVVRITGKGDKE 176

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +    I ++ +   P  L       LF   R + +    F   I+      G+
Sbjct: 177 RLVPMGENAVDWIEQFIETGRPQLLGEKSSDVLFPSRRARQMTRQTFWHRIKHYAVLAGI 236

Query: 257 PLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H +RH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 237 DADTLSPHVMRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQ 292

Query: 316 QTHPSI 321
             HP  
Sbjct: 293 THHPRA 298


>gi|154498071|ref|ZP_02036449.1| hypothetical protein BACCAP_02052 [Bacteroides capillosus ATCC
           29799]
 gi|150273061|gb|EDN00218.1| hypothetical protein BACCAP_02052 [Bacteroides capillosus ATCC
           29799]
          Length = 298

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 84/308 (27%), Positives = 147/308 (47%), Gaps = 17/308 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +   + +   L+ E+  S  TL SY  D  Q+  +L   +       T  Q +  ++  +
Sbjct: 7   MDYLKEYESYLKTEKKASLNTLSSYLRDIHQYAGWLEGES------LTAEQANQADVERY 60

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +     +     ++ RSL+ +KSF  +L    + T + +  +   K    LP+ L  K+ 
Sbjct: 61  VKHLSGKGKSVATVTRSLASMKSFYNFLIGAGVVTINPVRGITPAKVERKLPQILTSKEV 120

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
              ++         +     R+ A+L LLY  G+R+SE + L  +++      +R  G  
Sbjct: 121 DLFLEQ-----PDPSDAKGCRDKAMLELLYATGIRVSELIGLNLEHVNLSAGFVRCVG-R 174

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            K RI+PL P+  +A+  Y   + P  +    +  LF  + G+ ++   F + I+  +  
Sbjct: 175 SKERIIPLYPAAVRALTAYMTQVRPQMIEHPDEKALFVNMNGERMSRQGFWKIIKHYQEK 234

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    T HTLRHSFA HLL NG DLRSIQ +LGH  +S+TQIY  + ++     + ++
Sbjct: 235 AGIRKDITPHTLRHSFAAHLLENGADLRSIQEMLGHADISSTQIYAQLVNQ----KLKDV 290

Query: 314 YDQTHPSI 321
           Y++ HP  
Sbjct: 291 YNKAHPRA 298


>gi|167622800|ref|YP_001673094.1| tyrosine recombinase XerD [Shewanella halifaxensis HAW-EB4]
 gi|167352822|gb|ABZ75435.1| tyrosine recombinase XerD [Shewanella halifaxensis HAW-EB4]
          Length = 300

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 96/301 (31%), Positives = 146/301 (48%), Gaps = 16/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L   +GLS  TL +Y  D R    +L     E +T   +      E+R ++++R  
Sbjct: 14  FLDDLWSTKGLSDNTLSAYRTDLRHLDRYLQKLGGELVTCSQL------EVRDYLAERFD 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     S  R +S ++ F  YL  +K      +  + + K S  LP +L+E+    L+  
Sbjct: 68  KGSAKTSSARMMSSLRRFYGYLIVKKQIDTDPMALIESPKLSRKLPDSLSEEDIDRLL-- 125

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                  E   I+ R+ A+L LLY  GLR+SE + LT + +   Q  +RI GKG K R+V
Sbjct: 126 ---AEPIEDDPIECRDKAMLELLYATGLRVSELVGLTMEQLSLRQGLVRITGKGGKERLV 182

Query: 201 PLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           PL       I  Y      +L        LF   RG+ +    F   I+      G+   
Sbjct: 183 PLGELAITEIESYLKFARTELLKGKQSDVLFPSKRGQQMTRQTFWHRIKLYALRAGISTE 242

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V +      +  ++ + HP
Sbjct: 243 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATAR----LATLHSEHHP 298

Query: 320 S 320
            
Sbjct: 299 R 299


>gi|224370397|ref|YP_002604561.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2]
 gi|223693114|gb|ACN16397.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2]
          Length = 295

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 93/308 (30%), Positives = 158/308 (51%), Gaps = 15/308 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +    ++ +L +ERGL++ +L SY  D   F  FL     E   I  + Q+    I A
Sbjct: 1   MDRLIDRYMAHLTLERGLAQNSLTSYAMDLATFADFL-----ETNQISALDQVDTVVILA 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++     + +  RS  R L  ++ F ++L    +T  + +  +   K    LPR L++ Q
Sbjct: 56  WLVHLEAKGLSPRSRARHLIAVRGFYRFLALENLTRSNPLRLIDIPKAGTRLPRFLSQDQ 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++         T     RN+A+L +LYG GLR+SE + L  + +      +R+ GK
Sbjct: 116 VTALLEM-----PDRTTHRGLRNAAMLEILYGAGLRVSELVGLKTEQVDLVACFVRLFGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G + RIVP     R+  +E+     P+ L  N    LF    G P+    F + +++   
Sbjct: 171 GSRERIVPFGSHARQRTMEWLEWGRPWMLKKNASRYLFVARAGNPMTRQGFWKLLKKYAL 230

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+ +  + HTLRHSFATHLL  G DLRS+Q++LGH  +++TQIYT+V+ +    ++++
Sbjct: 231 GAGISIKVSPHTLRHSFATHLLEGGADLRSVQTMLGHADIASTQIYTHVSRQ----YLVD 286

Query: 313 IYDQTHPS 320
           ++ + HP 
Sbjct: 287 MHKKYHPR 294


>gi|146297890|ref|YP_001192481.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146152308|gb|ABQ03162.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 298

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 160/305 (52%), Gaps = 16/305 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++   L IERGLSK T+++Y  D  +  +FL     E   ++    ++   I+ FI  
Sbjct: 7   IKDYQSYLRIERGLSKNTIENYSFDIERLCLFLETNQIEVSPLK----ITDETIQQFI-Y 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             ++++  RS  R +SG+KSF  YL       +S +  + + K    LP  L  K+   L
Sbjct: 62  AISKEVNPRSQARIISGLKSFFSYLVFEDYRNDSPLELIESPKTGRKLPDTLAVKEIDAL 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D + L ++   +     N AIL  LYGCGLR+SE +SL   ++  D+  ++I GKG+K 
Sbjct: 122 IDAIDLSSNEGER-----NRAILESLYGCGLRVSELVSLKISDLYFDEGFIKITGKGNKE 176

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R VP+    +K I  Y +     LN+    +  LF   RG  L   +    I+ L   + 
Sbjct: 177 RFVPIGKLTQKYIQIYQNEVRVHLNIKKGCEDTLFLNRRGNQLTRAMIFTIIKDLAVKIN 236

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L  S + HTLRHSFATHLL NG DLRSIQ +LGH  ++TT+IY +++      ++ E+  
Sbjct: 237 LNKSISPHTLRHSFATHLLENGADLRSIQLMLGHESITTTEIYVHLD----RSFLKEVMH 292

Query: 316 QTHPS 320
             HP 
Sbjct: 293 SYHPR 297


>gi|116494854|ref|YP_806588.1| integrase [Lactobacillus casei ATCC 334]
 gi|191638361|ref|YP_001987527.1| Tyrosine recombinase xerD [Lactobacillus casei BL23]
 gi|227535149|ref|ZP_03965198.1| site-specific DNA tyrosine recombinase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239631553|ref|ZP_04674584.1| tyrosine recombinase xerD [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301066416|ref|YP_003788439.1| integrase [Lactobacillus casei str. Zhang]
 gi|116105004|gb|ABJ70146.1| tyrosine recombinase XerD subunit [Lactobacillus casei ATCC 334]
 gi|190712663|emb|CAQ66669.1| Tyrosine recombinase xerD [Lactobacillus casei BL23]
 gi|227187194|gb|EEI67261.1| site-specific DNA tyrosine recombinase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239526018|gb|EEQ65019.1| tyrosine recombinase xerD [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300438823|gb|ADK18589.1| Integrase [Lactobacillus casei str. Zhang]
 gi|327382389|gb|AEA53865.1| hypothetical protein LC2W_1532 [Lactobacillus casei LC2W]
 gi|327385590|gb|AEA57064.1| hypothetical protein LCBD_1567 [Lactobacillus casei BD-II]
          Length = 293

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 87/302 (28%), Positives = 151/302 (50%), Gaps = 17/302 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +++  L +ERGL+K T  SY+ D   F  +LA         +      +  I++F+ ++ 
Sbjct: 7   DFIHYLNVERGLAKATQTSYQQDLITFSAWLAARKRRTFPEE------FGTIQSFLKEQN 60

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
             K    S+ R +S ++ F ++L +    +   +  +   K++  LP  L+ ++   L+ 
Sbjct: 61  ATK-APASVSRMISALRKFYRFLLREGAISADPMTKIDTPKRAQHLPATLSSQEVDALM- 118

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                     K +  R+ AI  L+Y  GLR+SE + L    +    + L++ GKGDK R+
Sbjct: 119 ----AKPDTDKPLGLRDRAIFELMYATGLRVSEVVDLRLDQLHLAMNLLQVTGKGDKERL 174

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+ P   + +  Y       L   +Q   +F    G P+      + ++     +G+  
Sbjct: 175 VPISPQATQWVDRYLQEARPKLLKRVQPKNVFVNFHGGPMTRQGIWKNLKAYIASIGIEK 234

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             T HTLRHSFAT LL NG DLR +Q +LGH  +STTQIYT++++++    ++ +Y +TH
Sbjct: 235 DVTPHTLRHSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQH----LVAVYHKTH 290

Query: 319 PS 320
           P 
Sbjct: 291 PR 292


>gi|317489856|ref|ZP_07948349.1| tyrosine recombinase XerD [Eggerthella sp. 1_3_56FAA]
 gi|325829949|ref|ZP_08163407.1| tyrosine recombinase XerD [Eggerthella sp. HGA1]
 gi|316911011|gb|EFV32627.1| tyrosine recombinase XerD [Eggerthella sp. 1_3_56FAA]
 gi|325488116|gb|EGC90553.1| tyrosine recombinase XerD [Eggerthella sp. HGA1]
          Length = 297

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 152/308 (49%), Gaps = 18/308 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L +ERG S LT+ +Y  D + +  FL     EK  ++++  +    I A+ S 
Sbjct: 5   YREYLAYLRVERGSSPLTVSAYAADLKDYAQFL-----EKRGVESLDDVDREVIVAYESD 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     ++ R +S +K F ++L +      +    ++  K  + LP  L+  Q   +
Sbjct: 60  LFGRGYAASTVDRHVSVLKGFHRFLVREGYARRNPADTIQLPKAPDRLPDVLSVAQVDAM 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +   L     +   +  RN AIL +LYGCGLR+SE   L   + + ++  L I GKG+K 
Sbjct: 120 LSRPL-----DEGPLALRNQAILEVLYGCGLRVSECTGLDLGDAILEEGYLHILGKGNKE 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLN---LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           RI P+  +  +A+ +Y +    +L          +F   RG  L        + +  R++
Sbjct: 175 RIAPISGAALRALRDYLERGRPELVRSYAKSTSAVFLNARGGRLTRQSVHSLVAEAGRFI 234

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+  +   HTLRHSFATH+L+ G DLR IQ ILGH  +STTQIYT+VN  +    + E Y
Sbjct: 235 GVA-NLHPHTLRHSFATHMLAGGADLRVIQEILGHSDISTTQIYTHVNRTH----IREEY 289

Query: 315 DQTHPSIT 322
              HP   
Sbjct: 290 LSAHPRAK 297


>gi|291615189|ref|YP_003525346.1| tyrosine recombinase XerD [Sideroxydans lithotrophicus ES-1]
 gi|291585301|gb|ADE12959.1| tyrosine recombinase XerD [Sideroxydans lithotrophicus ES-1]
          Length = 303

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 94/314 (29%), Positives = 156/314 (49%), Gaps = 19/314 (6%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +   +LL E   +   L +E GLS+ TL+SY  D  +F  +L     +K     ++  ++
Sbjct: 6   MSDTDLLDE---FSDALWLEDGLSRNTLESYRRDLNKFTEWL-----QKQRGCGLQAATH 57

Query: 69  TEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
            +I+ F++   + +K    S  R++S +K   +YL ++   T    L +   K   SLP+
Sbjct: 58  ADIQGFLAHLVSGEKAKATSTSRAISSLKRLFRYLLRQNKITADPTLQIATPKLPRSLPK 117

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           +L E+    L+     +       +  R+  +L +LY  GLR+SE + L+   +  D   
Sbjct: 118 SLTEEDVELLL-----NAPDVDTPLGMRDRTMLEVLYASGLRVSELVGLSVAQVSLDMGV 172

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            R+ GKG K R+VPL       +  Y  +  P  L   +   LF   RG+ +   +F   
Sbjct: 173 TRVMGKGSKERLVPLGEEALDWVKRYLAEARPALLAGQVADALFVTQRGEGMTRQMFWYL 232

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           I++  +  GL    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +  
Sbjct: 233 IKKHAKEGGLHKPLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARER- 291

Query: 307 GDWMMEIYDQTHPS 320
              +  ++   HP 
Sbjct: 292 ---LKALHAMHHPR 302


>gi|229494828|ref|ZP_04388582.1| tyrosine recombinase XerD [Rhodococcus erythropolis SK121]
 gi|229318266|gb|EEN84133.1| tyrosine recombinase XerD [Rhodococcus erythropolis SK121]
          Length = 307

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 87/316 (27%), Positives = 144/316 (45%), Gaps = 17/316 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L ++  ++L +L +ERG ++ TL SY  D  ++  +L         I  +  ++  ++  
Sbjct: 2   LARQVDSYLDHLAVERGSARNTLLSYRRDLNRYAEYLNGR-----GIDDVAGVTENDVTE 56

Query: 74  FISKRRTQK-------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           F++  R          +   S  R+L  ++ F K+     + +      ++       LP
Sbjct: 57  FVTHLRLGDKDAGVVPLAASSAARTLIAVRGFHKFSAAEGLVSVDVARTVKPPTPGRKLP 116

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           +AL     + L+ +     +      D R+ A+L LLY  G RI+EA+ L   +I  +  
Sbjct: 117 KALPLDDVIALL-DASGGGAAGDGPRDLRDRALLELLYSTGARITEAIDLDVDDIDTETR 175

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           ++ ++GKG K RIVP+      A+  Y       L       LF   RG  L+     + 
Sbjct: 176 SVLLKGKGGKQRIVPVGRPAIAAVDAYLVRGRPSLATRGVPALFLNARGGRLSRQSAWQI 235

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           ++      G+    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V     
Sbjct: 236 LQDAAASAGIKADVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVT---- 291

Query: 307 GDWMMEIYDQTHPSIT 322
              M E++ Q HP   
Sbjct: 292 VTAMREVWAQAHPRAR 307


>gi|261345596|ref|ZP_05973240.1| tyrosine recombinase XerD [Providencia rustigianii DSM 4541]
 gi|282566076|gb|EFB71611.1| tyrosine recombinase XerD [Providencia rustigianii DSM 4541]
          Length = 300

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 95/310 (30%), Positives = 155/310 (50%), Gaps = 17/310 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L    + +L  + +E+ L++ TL SY  D +    +L         +Q+I      +++
Sbjct: 5   QLNPLIEQFLDTIWLEQDLAENTLASYRNDLQSLDRWLDAQQLHLENVQSI------DLQ 58

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +F+++R        S  R LS ++   +YL + KI  +     +   K    LP+ L+EK
Sbjct: 59  SFLAERIDSGYKAASSARLLSAMRRLFQYLYREKIRLDDPSAVIAAPKIPQRLPKDLSEK 118

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q   L+     +       ++ R+ A+L +LY CGLR+SE + LT  +I   Q  +R+ G
Sbjct: 119 QVEDLL-----NAPATEDSLELRDKAMLEVLYACGLRVSELIGLTFSDISLRQGVIRVVG 173

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KGDK R++PL       + +Y +    DL N      LF   RG  +    F   I+   
Sbjct: 174 KGDKERLIPLGEEAIYWVEKYLEYGRPDLLNGKASDVLFPSKRGTKMTRQTFWHRIKYYA 233

Query: 252 RYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               +   S + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +
Sbjct: 234 VLANIDGESLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----L 289

Query: 311 MEIYDQTHPS 320
             +++Q HP 
Sbjct: 290 RTLHEQHHPR 299


>gi|313202049|ref|YP_004040707.1| tyrosine recombinase xerd [Methylovorus sp. MP688]
 gi|312441365|gb|ADQ85471.1| tyrosine recombinase XerD [Methylovorus sp. MP688]
          Length = 298

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 89/312 (28%), Positives = 154/312 (49%), Gaps = 16/312 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S        +++ +L +E GL++ TL+SY  D   F  +L     +      + Q    
Sbjct: 1   MSAANAALLDSFVDHLWLEDGLARNTLESYRRDLALFAEWLWSEHAKL-----LNQADQG 55

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +++ +++ R       RS+ R ++ ++ F +Y  +    +    L +   K   SLP++L
Sbjct: 56  DLQQYLAFRFPTS-KPRSVSRLIASLRRFYRYGLREGQISVDPTLLIDTPKLPRSLPKSL 114

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           NE + + L+     +     + I  R+ A+L  LY CGLR+SE + L    +  ++  +R
Sbjct: 115 NEDEVVALL-----NAPDIAQAIGLRDRAMLETLYACGLRVSELVGLRYTEVSLNEGVVR 169

Query: 190 IQGKGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           + GKG K R+VPL       +L Y  +  P  L   +   LF   RG+ +    F   I+
Sbjct: 170 VTGKGSKTRLVPLGEESVDWLLRYAREGRPQILQQRVSDSLFVTQRGEAMTRQAFWYLIK 229

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     G+    + H LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +    
Sbjct: 230 RYALQAGIHKPLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARER--- 286

Query: 309 WMMEIYDQTHPS 320
            + +++   HP 
Sbjct: 287 -LKQLHAMHHPR 297


>gi|209694155|ref|YP_002262083.1| site-specific tyrosine recombinase XerD [Aliivibrio salmonicida
           LFI1238]
 gi|208008106|emb|CAQ78247.1| tyrosine recombinase XerD [Aliivibrio salmonicida LFI1238]
          Length = 300

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 155/308 (50%), Gaps = 17/308 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +   + +L  + +ERGLS+ TL SY  D  + L +L    E      +I  +   E +A+
Sbjct: 7   MALIERFLDTMWMERGLSENTLSSYRNDLMKLLNWL---DENHYKCASISAMGLNEYQAY 63

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +     ++    S  R LS ++ F +YL + KI  +     + + K    LP+ L+E+Q 
Sbjct: 64  LV---DKQYKQTSRARMLSALRRFFQYLHREKIRGDDPTALLMSPKLPQRLPKDLSEEQV 120

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L++       +    ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG
Sbjct: 121 NDLLE-----APNVDDPLELRDRAMLELLYATGLRVTELVSLTMENLSLRQGVVRVTGKG 175

Query: 195 DKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           DK R+VP+  +    I  + D      L       +F   R + +    F   I+     
Sbjct: 176 DKERLVPMGENAVYWIQTFLDQGRSTLLGEKSSDVVFPSRRARQMTRQTFWHRIKHYAVI 235

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 236 AGIDTDKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQ 291

Query: 313 IYDQTHPS 320
           I+ + HP 
Sbjct: 292 IHQEHHPR 299


>gi|330447418|ref|ZP_08311067.1| tyrosine recombinase XerD [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491609|dbj|GAA05564.1| tyrosine recombinase XerD [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 298

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 93/306 (30%), Positives = 149/306 (48%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + +ERGLS+ TL SY  D  + L +L   +   I       +S  +++ +   
Sbjct: 8   IERFLDAMWMERGLSENTLASYRNDLMKLLNWLKQESRNVIN------VSVDDLQRYQQW 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S  R +S I+   +YL + K+  +     +   K    LP+ L+E Q   L
Sbjct: 62  LFDKDYKQTSRARMVSAIRRLFQYLHREKMRDDDPSAMLVTPKLPKRLPKDLSEAQVDAL 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D            I+ R+ A+L LLY  GLR++E ++LT +NI   Q  +RI GKGDK 
Sbjct: 122 LD-----APDVNDPIELRDKAMLELLYATGLRVTELVTLTMENISLRQGVVRITGKGDKE 176

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +    I ++ +   P  L       LF   R + +    F   I+      G+
Sbjct: 177 RLVPMGENAIDWIEQFIETGRPQLLGEKSSDVLFPSRRARQMTRQTFWHRIKHYAVLAGI 236

Query: 257 PLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H +RH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 237 DAETLSPHVMRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQ 292

Query: 316 QTHPSI 321
             HP  
Sbjct: 293 THHPRA 298


>gi|325962900|ref|YP_004240806.1| tyrosine recombinase XerD [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468987|gb|ADX72672.1| tyrosine recombinase XerD [Arthrobacter phenanthrenivorans Sphe3]
          Length = 334

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 137/314 (43%), Gaps = 26/314 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++LQ++ +ERGL+  TL +Y  D  ++  +LA          + + ++   +  ++    
Sbjct: 33  DYLQHMGVERGLAANTLSAYRRDLARYSRYLAAQ-----GCSSPQDITRHHVTGYVRALS 87

Query: 80  TQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
                   +G RS  R++  ++   K+      T       +        LP+A++  + 
Sbjct: 88  DGSDGGSALGVRSAARTVVAVRGLHKFWALEGYTPADPASEVHPPMPGKRLPKAISVDEV 147

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-----TLR 189
             +++      +        R+ A+L  LY  G RISEA+ L   +I  D        +R
Sbjct: 148 TRILE-----AAGTDTATGLRDRALLEFLYSTGARISEAVGLDVDDISLDTGESGPAIVR 202

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYI 247
           + GKG K R+VPL     +A+  Y       L    +    LF   RG  ++       +
Sbjct: 203 LFGKGSKERLVPLGSYGARALDAYLVRGRPLLAAKGKGTPALFLNARGGRISRQSAWTIL 262

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +       +    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQ+YT V      
Sbjct: 263 KAAAGKAQITKDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVT----A 318

Query: 308 DWMMEIYDQTHPSI 321
           D + EIY   HP  
Sbjct: 319 DTLREIYAAAHPRA 332


>gi|319649574|ref|ZP_08003730.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2]
 gi|317398736|gb|EFV79418.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2]
          Length = 300

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 160/303 (52%), Gaps = 16/303 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +++ L+IE+  S+ T++ Y+ D  +F +F+A     +  I  + +++Y ++R ++++   
Sbjct: 12  FIEYLQIEKNYSQYTIEHYQHDISEFFMFMA-----EQAIADLTKVAYQDVRIYLTELYD 66

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +K+  +S+ R +S ++SF K+L + +   E+    +   K    LP    E + + L + 
Sbjct: 67  KKMSRKSVARKISSLRSFFKFLLREEKVAENPFALVSIPKAQKKLPEFFYEAEMMQLFNA 126

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
               T      +  RN A+L LLY  G+R+SE   +  +++    ST+ ++GKG K R V
Sbjct: 127 CEASTP-----LGQRNKALLELLYATGIRVSECSQIRLKDLDMYLSTVLVRGKGSKERYV 181

Query: 201 PLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           P     + A+  Y +     L  N N+Q  LF   RG PL     +  + ++     L  
Sbjct: 182 PFGSFAQDALDTYINHGREKLLANGNVQENLFLNARGGPLTARGIRTILDRIIEKSSLTG 241

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRH+FATHL++NG D+R++Q +LGH  LS+TQ+YT+V ++    ++ + Y   H
Sbjct: 242 KIHPHMLRHTFATHLMANGADMRTVQELLGHAFLSSTQVYTHVTNE----YLKKTYMAHH 297

Query: 319 PSI 321
           P  
Sbjct: 298 PRA 300


>gi|222053854|ref|YP_002536216.1| tyrosine recombinase XerC [Geobacter sp. FRC-32]
 gi|221563143|gb|ACM19115.1| tyrosine recombinase XerC [Geobacter sp. FRC-32]
          Length = 294

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 96/311 (30%), Positives = 152/311 (48%), Gaps = 17/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + K    + + L IER +S  T+  Y  D   FL FL     +      +  +S+  IR 
Sbjct: 1   MKKLIDQFCRYLAIERNVSPHTVAGYRSDLTFFLSFLDREKVQ----ADVGSISHLLIRR 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +I+          S+ R L+ I++  KYL ++ + +++    +   KK   +P  L   +
Sbjct: 57  YIAGLYKDHQK-SSIGRQLAAIRALFKYLLRQGLVSKNPAELVSTPKKEKKIPYHLTIDE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
             TLV+        +   +  R+ AIL LLY CG+R+SE  +L    +  ++  +R+ GK
Sbjct: 116 VTTLVE-----APQQEDLLSLRDRAILELLYSCGIRVSELTALNVGEVEMNERLIRVCGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K RIVP+     +A+ +Y            + PL    RG  L      R + +    
Sbjct: 171 GNKERIVPIGRKALEALADYLSARN---TPPEEAPLILNARGTRLTSRSVARIVDRYIVK 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +      + HTLRH+FATH+L  G DLR+IQ +LGH  LSTTQ YT+V+     D +ME+
Sbjct: 228 IATMKKISPHTLRHTFATHMLEGGADLRAIQELLGHASLSTTQKYTHVS----IDRLMEV 283

Query: 314 YDQTHPSITQK 324
           YD+ HP   +K
Sbjct: 284 YDKAHPKARKK 294


>gi|90580583|ref|ZP_01236388.1| tyrosine recombinase [Vibrio angustum S14]
 gi|90438241|gb|EAS63427.1| tyrosine recombinase [Photobacterium angustum S14]
          Length = 298

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 92/306 (30%), Positives = 150/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + +ERGLS+ TL SY  D  + L +L   +   I+      +S  +++ +   
Sbjct: 8   IERFLDAMWMERGLSENTLSSYRNDLTKLLRWLKQESRNVIS------VSVDDLQRYQQW 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S  R +S I+   +YL + K+  +     +   K    LP+ L+E Q   L
Sbjct: 62  LFDKDYKQTSRARMVSAIRRLFQYLHREKMRDDDPSAMLVTPKLPKRLPKDLSEAQVDAL 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++            I+ R+ A+L LLY  GLR++E ++LT +NI   Q  +RI GKGDK 
Sbjct: 122 LE-----APDVNDPIELRDKAMLELLYATGLRVTELVTLTMENISLRQGVVRITGKGDKE 176

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +    I ++ +   P  L       LF   R + +    F   I+      G+
Sbjct: 177 RLVPMGENAVDWIEQFIETGRPQLLGEKSSDVLFPSRRARQMTRQTFWHRIKHYAVLAGI 236

Query: 257 PLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H +RH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 237 DADTLSPHVMRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQ 292

Query: 316 QTHPSI 321
             HP  
Sbjct: 293 THHPRA 298


>gi|145219991|ref|YP_001130700.1| tyrosine recombinase XerD [Prosthecochloris vibrioformis DSM 265]
 gi|145206155|gb|ABP37198.1| tyrosine recombinase XerD [Chlorobium phaeovibrioides DSM 265]
          Length = 306

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 84/314 (26%), Positives = 148/314 (47%), Gaps = 13/314 (4%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E +        +N+L  L IER  S  T  SY  D +++L  +           ++  ++
Sbjct: 4   EPLQKPFGAVLENFLNYLLIERNFSPNTRDSYRNDLQRYLQAMQE------GCGSLEAIN 57

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
              I  F+ +     +   S+ R++S I+S  ++L   ++   +   N+   K    LP 
Sbjct: 58  PDSINRFLDELHKTGLEASSIARNVSAIRSLHRFLINDRVLESNPAENLHQPKLPKYLPS 117

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L   + + ++         E   +  R+ AIL LLY  G+R+SE ++L  QN+   +  
Sbjct: 118 VLTLDETMRILQAPAQKVPPEK--LYLRDQAILELLYATGMRVSELVNLKQQNLYLPEQF 175

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           +R+ GKG K R+VP+  S   ++  Y   L         +  LF   RGK ++       
Sbjct: 176 IRVFGKGSKERLVPVGSSAVNSLTLYRQKLRIQLAGAQSEDCLFLNARGKKMSRMAVFTI 235

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +++     G+P + + HT RH+FATHLL  G DLR++Q +LGH  +  TQIY++++    
Sbjct: 236 VKEYAMLAGIPKTVSPHTFRHTFATHLLEGGADLRAVQEMLGHSSIVATQIYSHID---- 291

Query: 307 GDWMMEIYDQTHPS 320
             ++ E++   HP 
Sbjct: 292 RSFVKEVHRSFHPR 305


>gi|23335402|ref|ZP_00120638.1| COG4974: Site-specific recombinase XerD [Bifidobacterium longum
           DJO10A]
 gi|227547607|ref|ZP_03977656.1| integrase/recombinase XerD family protein [Bifidobacterium longum
           subsp. infantis ATCC 55813]
 gi|239621212|ref|ZP_04664243.1| tyrosine recombinase xerD [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|312132535|ref|YP_003999874.1| integrase/recombinase [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482508|ref|ZP_07941524.1| tyrosine recombinase XerD [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689456|ref|YP_004209190.1| recombinase [Bifidobacterium longum subsp. infantis 157F]
 gi|227211862|gb|EEI79758.1| integrase/recombinase XerD family protein [Bifidobacterium longum
           subsp. infantis ATCC 55813]
 gi|239515673|gb|EEQ55540.1| tyrosine recombinase xerD [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|291516706|emb|CBK70322.1| tyrosine recombinase XerD subunit [Bifidobacterium longum subsp.
           longum F8]
 gi|311773469|gb|ADQ02957.1| probable integrase/recomBinase [Bifidobacterium longum subsp.
           longum BBMN68]
 gi|316916060|gb|EFV37466.1| tyrosine recombinase XerD [Bifidobacterium sp. 12_1_47BFAA]
 gi|320460792|dbj|BAJ71412.1| recombinase [Bifidobacterium longum subsp. infantis 157F]
          Length = 311

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 86/310 (27%), Positives = 145/310 (46%), Gaps = 17/310 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L ++ +ERGL+  T+ +YE D  +++ +L     E   I     ++  ++  +I+  
Sbjct: 13  EQFLVHIGVERGLATATVTAYESDIAKYIDWL-----ETRGIHEPDAITKQDVEDYIAAL 67

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  RS  R L+ I  F ++   +   T      ++  K +++LP  L   +   L+
Sbjct: 68  DQAGESARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLL 127

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D         T  +  R+ A+L  +Y  G R+SEA      +I  D+   R+ GKG K R
Sbjct: 128 DA--AAVGGSTDPVVLRDKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQR 185

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL------PLFRGIRGKPLNPGVFQRYIRQLRR 252
           +VPL     +AI  Y +    +L             LF   RGK ++       ++    
Sbjct: 186 LVPLGSYACRAITAYLNAGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGE 245

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+      HTLRHSFATHL+  G D+R++Q +LGH  ++TTQIYT+V+ +     ++E
Sbjct: 246 RAGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPET----LIE 301

Query: 313 IYDQTHPSIT 322
            Y  +HP   
Sbjct: 302 TYLTSHPRAR 311


>gi|324017291|gb|EGB86510.1| tyrosine recombinase XerD [Escherichia coli MS 117-3]
          Length = 298

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 150/309 (48%), Gaps = 17/309 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L  L +E+ L++ TL +Y  D    + +L           T+      +++A 
Sbjct: 5   LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG------LTLATAQSDDLQAL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R        S  R LS ++   +YL + K   +    ++ + K    LP+ L+E Q 
Sbjct: 59  LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+   L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG
Sbjct: 119 ERLLQAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y     P+ LN      LF   R + +    F   I+     
Sbjct: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQILLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHPSI 321
           ++ Q HP  
Sbjct: 290 LHQQHHPRA 298


>gi|213691797|ref|YP_002322383.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|213523258|gb|ACJ52005.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320457891|dbj|BAJ68512.1| recombinase [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 308

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 86/310 (27%), Positives = 144/310 (46%), Gaps = 17/310 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L ++ +ERGL+  T+ +YE D  +++ +L     E   I     ++  ++  +I+  
Sbjct: 10  EQFLVHIGVERGLATATVTAYESDIAKYIDWL-----ETRGIHEPDAITKQDVEDYIAAL 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  RS  R L+ I  F ++   +   T      ++  K +++LP  L   +   L+
Sbjct: 65  DQAGESARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLL 124

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D         T  +  R+ A+L  +Y  G R+SEA      +I  D+   R+ GKG K R
Sbjct: 125 DT--AAVGGSTDPVVLRDKALLEFMYATGCRVSEATGTNLDDIDLDEHIARLMGKGSKQR 182

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL------PLFRGIRGKPLNPGVFQRYIRQLRR 252
           +VPL     +AI  Y +    +L             LF   RGK ++       ++    
Sbjct: 183 LVPLGSYACRAITAYLNAGRGELERRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGE 242

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+      HTLRHSFATHL+  G D+R++Q +LGH  ++TTQIYT+V+ +     ++E
Sbjct: 243 RAGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPE----ALIE 298

Query: 313 IYDQTHPSIT 322
            Y   HP   
Sbjct: 299 TYLTAHPRAR 308


>gi|119357566|ref|YP_912210.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides DSM 266]
 gi|119354915|gb|ABL65786.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides DSM 266]
          Length = 304

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 92/304 (30%), Positives = 158/304 (51%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +N+L +L IER  S+ T  SY  D  ++L+ +        T++ I  ++ ++IR FIS+
Sbjct: 12  LENFLNHLLIERNFSQNTRVSYRNDLHRYLLTVQE------TMKPITSVTASDIRQFISE 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +   ++ R++S I+S  ++L    +   +   N+   K++ +LP  L  ++ L L
Sbjct: 66  LHETGLEPATIARNISAIRSLFRFLVIEHLLEANPAENIHQPKQAKNLPSVLTIEETLRL 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++  +L        +  R+ AIL  LY  G+R+SE   L  Q++  +   +RI GKG K 
Sbjct: 126 LEAPILQHPPGKYLL--RDKAILEFLYATGVRVSELTELQQQSLFLEAGFVRILGKGSKE 183

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  S   +I  Y   L    +N N Q  +F   RGK L+       +++     G+
Sbjct: 184 RLVPIGLSAINSINRYRTELRIGLINRNSQDYVFLNARGKKLSRMAIYSMVQEYASLSGI 243

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL  G DLR++Q +LGH  +  TQ+YT+++      ++ E++  
Sbjct: 244 EKKISPHTLRHTFATHLLEGGADLRAVQEMLGHSSILATQLYTHID----RSFIKEVHKT 299

Query: 317 THPS 320
            HP 
Sbjct: 300 FHPR 303


>gi|323495291|ref|ZP_08100372.1| site-specific tyrosine recombinase XerC [Vibrio brasiliensis LMG
           20546]
 gi|323310468|gb|EGA63651.1| site-specific tyrosine recombinase XerC [Vibrio brasiliensis LMG
           20546]
          Length = 308

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 82/313 (26%), Positives = 153/313 (48%), Gaps = 16/313 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L K  + + + L  E+GLS  T ++Y+         L       + ++  +Q+    +R 
Sbjct: 12  LQKPLERFYEYLRSEKGLSLHTQRNYKQQLETMAHHLVH-----LGLKEWQQVDAGWVRQ 66

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             SK     +   S+   LS ++SF  +L  R     +    +   +K   LP+ L+  +
Sbjct: 67  IASKGMRDGMKASSIATRLSSLRSFFDFLILRGEMAANPAKGVSAPRKKRPLPKNLDVDE 126

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++       +E   +  R+ A++ L+YG GLR++E +S+  +++      LR+ GK
Sbjct: 127 VGQLLEV------NEDDPLAVRDRAMMELMYGAGLRLAELVSVNVKDVSLSSGELRVIGK 180

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GDK R VP      + + ++  +    L  + +  LF    G  ++    Q+ + +  + 
Sbjct: 181 GDKERKVPFAGMATEWVTKWLKVRS-SLAKSDETALFVSKLGVRISHRNVQKRMAEWGQK 239

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ ++    + ++
Sbjct: 240 QSVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQH----LADV 295

Query: 314 YDQTHPSITQKDK 326
           YDQ HP   +K K
Sbjct: 296 YDQAHPRAKKKGK 308


>gi|148978770|ref|ZP_01815150.1| site-specific tyrosine recombinase XerC [Vibrionales bacterium
           SWAT-3]
 gi|145962191|gb|EDK27475.1| site-specific tyrosine recombinase XerC [Vibrionales bacterium
           SWAT-3]
          Length = 310

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 154/314 (49%), Gaps = 16/314 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L K    + + L  E+GLS  T ++Y+         L       + ++  RQ+    +R 
Sbjct: 13  LQKPLSRFYEYLRSEKGLSLHTQRNYKQQLETMAEHLVT-----LGLKDWRQVDAAWVRQ 67

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             SK     +   S+   LS ++SF  +L  R   T +    +   +K   LP+ L+  +
Sbjct: 68  LASKGMRDGMKASSIATRLSSLRSFFDFLVLRGEITANPAKGVSAPRKQRPLPKNLDVDE 127

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D       +E   +  R+ A++ ++YG GLR++E + +  ++++  Q  +R+ GK
Sbjct: 128 VGQLLDV------NEDDPLSIRDRAMMEVMYGAGLRLAELVGINLKDVLSRQGEIRVIGK 181

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GDK R  P     ++ + ++  +   +L    +  LF    G  ++    Q+ + +  + 
Sbjct: 182 GDKERKAPFSGLAKEWVDKWLRVR-GELASPGEDALFVSKLGTRISHRSVQKRMEEWGKK 240

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    + H LRHSFATH+L +  +LR++Q +LGH  +STTQ+YT+++ ++    + + 
Sbjct: 241 QSVASHISPHKLRHSFATHVLESSQNLRTVQELLGHENISTTQVYTHLDFQH----LAQA 296

Query: 314 YDQTHPSITQKDKK 327
           YDQ HP   +K+K 
Sbjct: 297 YDQAHPRARKKNKD 310


>gi|146312952|ref|YP_001178026.1| site-specific tyrosine recombinase XerD [Enterobacter sp. 638]
 gi|145319828|gb|ABP61975.1| tyrosine recombinase XerD subunit [Enterobacter sp. 638]
          Length = 298

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 89/309 (28%), Positives = 150/309 (48%), Gaps = 17/309 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L  L +E+ L++ TL +Y  D      +LA          ++ Q    +++  
Sbjct: 5   LALIEQFLDALWLEKNLAENTLSAYRRDLTMLAEWLAHRG------LSLEQAQRDDLQTL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R        S  R LS ++   ++L + K+  +     + + K    LP+ L+E Q 
Sbjct: 59  LAERMDGGYKATSSARLLSAMRRLFQHLYREKLRADDPSALLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+ +  +        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG
Sbjct: 119 DRLLQSPTVDVP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y     P+ LN      LF   R + +    F   I+     
Sbjct: 174 NKERLVPLGEEAVYWVETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYATL 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHPSI 321
           ++ Q HP  
Sbjct: 290 LHQQHHPRA 298


>gi|220933239|ref|YP_002512138.1| tyrosine recombinase XerC [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994549|gb|ACL71151.1| tyrosine recombinase XerC [Thioalkalivibrio sp. HL-EbGR7]
          Length = 298

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 92/316 (29%), Positives = 151/316 (47%), Gaps = 20/316 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S         +L++L  ER  S  T+++Y  D R+    +               +   
Sbjct: 1   MSVAKSPWIDRYLRHLREERRYSPHTVENYARDLRRLCEAVG---------DDWSSVKVH 51

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +IRA ++K   Q  G ++L+R LS I+ F  YL +  +   +  L++R  K    LP  L
Sbjct: 52  DIRALVAKEHRQGAGSKTLQRLLSAIRGFFNYLIREGVADANPALDVRAPKSGRKLPGVL 111

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  Q   L+D          + +  R+ AIL L Y  GLR++E + L   ++    + LR
Sbjct: 112 DVDQVARLLDLP------GDEALVVRDRAILELFYSSGLRLAELVGLDLVDVDLGDAQLR 165

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG K R +P+      A+  +  +    L    +  LF G RG+ L     Q  + +
Sbjct: 166 VTGKGRKARDLPIGRHAVAALKAWLPMRAG-LAAADEQALFVGQRGRRLGARAVQTRLAR 224

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                GL      H LRHSFA+HLL + GDLR++Q +LGH  +STTQ+YT+++ ++    
Sbjct: 225 HAGLQGLDRRVHPHLLRHSFASHLLESSGDLRAVQELLGHADISTTQVYTHLDYQH---- 280

Query: 310 MMEIYDQTHPSITQKD 325
           + ++YD  HP   +K 
Sbjct: 281 LAKVYDAAHPRARRKP 296


>gi|260599234|ref|YP_003211805.1| site-specific tyrosine recombinase XerD [Cronobacter turicensis
           z3032]
 gi|260218411|emb|CBA33498.1| Tyrosine recombinase xerD [Cronobacter turicensis z3032]
          Length = 298

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 151/309 (48%), Gaps = 17/309 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L  L +ER L++ +L +Y  D    + +L           ++  +   +++  
Sbjct: 5   LARIEQFLDALWLERNLAENSLSAYRRDLSMVVEWLHHRG------LSLATVQSGDLQTL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R        S  R LS ++   ++L + KI  +     + + K    LP+ L+E Q 
Sbjct: 59  LAERVEGGYKATSTARMLSAVRRLFQHLYREKIRDDDPSALLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+           + I+ R+ A+L +LY  GLR+SE + LT  ++   Q  +R+ GKG
Sbjct: 119 DRLL-----QAPTVEEPIELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       + +Y     P+ LN      LF   R + +    F   I+   + 
Sbjct: 174 NKERLVPLGEEAVYWVEQYLTHGRPWLLNGQSLDILFPSNRARQMTRQTFWHRIKHYAQL 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHPSI 321
           ++ Q HP  
Sbjct: 290 LHQQHHPRA 298


>gi|218550141|ref|YP_002383932.1| site-specific tyrosine recombinase XerD [Escherichia fergusonii
           ATCC 35469]
 gi|218357682|emb|CAQ90323.1| site-specific tyrosine recombinase [Escherichia fergusonii ATCC
           35469]
          Length = 298

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 151/309 (48%), Gaps = 17/309 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L  L +E+ L++ TL +Y  D    + +L           T+      +++A 
Sbjct: 5   LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG------LTLATAQSDDLQAL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R        S  R LS ++   +YL ++K   +    ++ + K    LP+ L+E Q 
Sbjct: 59  LAERLEGGYKATSSARLLSAVRRLFQYLYRKKFREDDPSAHLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+   L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG
Sbjct: 119 ERLLQAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y     P+ LN      LF   R + +    F   I+     
Sbjct: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHPSI 321
           ++ Q HP  
Sbjct: 290 LHQQHHPRA 298


>gi|86133541|ref|ZP_01052123.1| phage integrase family protein [Polaribacter sp. MED152]
 gi|85820404|gb|EAQ41551.1| phage integrase family protein [Polaribacter sp. MED152]
          Length = 298

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 94/306 (30%), Positives = 152/306 (49%), Gaps = 16/306 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
              ++   L+IERGLS+ T+ SY  D  +   FL       I I  I+ +    ++ FI 
Sbjct: 6   AINDYQLFLKIERGLSQNTIDSYTRDLNKLTQFLNV---NDIEISPIK-IDKEIVQQFI- 60

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               + +  RS  R +SG++SF  YL        +    +   K    LP  L+E +  +
Sbjct: 61  YDVAKGVNPRSQARIISGLRSFFDYLVFEDFRETNPTDLIEAPKIGRKLPDTLSEDEINS 120

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+ ++ L      +     N  IL  LY CGLR+SE ++L   ++  D+  +++ GKG+K
Sbjct: 121 LIQSIDLSHPQGER-----NRTILETLYSCGLRVSELITLKISDLYFDEGFIKVTGKGNK 175

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLN--LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            R VP+  + +K I  Y       +    + +  LF   RGK L   +    ++ L   +
Sbjct: 176 ERFVPIHYNAQKYITTYIHQIRNQVKPVKSFEDTLFLNRRGKGLTRQMIFTILKDLAIKI 235

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            L    + HTLRHSFATHLL NG DLR+IQ +LGH  ++TT++Y ++++     ++ EI 
Sbjct: 236 DLNKKISPHTLRHSFATHLLKNGADLRAIQQMLGHESITTTEVYVHLDN----SYLKEIV 291

Query: 315 DQTHPS 320
           +  HP 
Sbjct: 292 ETYHPR 297


>gi|284044544|ref|YP_003394884.1| tyrosine recombinase XerD [Conexibacter woesei DSM 14684]
 gi|283948765|gb|ADB51509.1| tyrosine recombinase XerD [Conexibacter woesei DSM 14684]
          Length = 320

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 88/308 (28%), Positives = 156/308 (50%), Gaps = 21/308 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +++  LE+ERGLS+ TL++Y  D  Q+  +L    ++ +      ++ + ++ AF+    
Sbjct: 21  DFIAYLELERGLSRNTLEAYRSDLLQYGAYLDRAGKDAL------RVEHGDLAAFVGALA 74

Query: 80  TQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
                       +++R ++ ++SF ++L++ +I        ++   +   LP+ L+  + 
Sbjct: 75  AGGDGRAPAAATTVQRKVACLRSFYRHLRREEILDRDPTAELKGPPRGKKLPKVLSRDEV 134

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
                  LL     T     R+ A+L L+Y CGLR SEA+ +    +  D   LR  GKG
Sbjct: 135 -----QHLLSQPRGTGPAALRDRALLELMYACGLRASEAVDMQLDELDVDDGILRANGKG 189

Query: 195 DKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VP+      A+  Y     P  + L  +  +F   RG  L      + +++  R 
Sbjct: 190 NKERLVPIGSKALDALRHYLTRGRPQMVGLREEKRVFVNQRGHGLTRQGLYKIVQRHART 249

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL    + HTLRH+FATHLL+ G DLRS+Q +LGH  ++TTQIYT+++++     + ++
Sbjct: 250 AGLGDKMSPHTLRHTFATHLLAGGCDLRSLQEMLGHADIATTQIYTHLSAER----LRDV 305

Query: 314 YDQTHPSI 321
           Y   HP  
Sbjct: 306 YFDAHPRA 313


>gi|212715582|ref|ZP_03323710.1| hypothetical protein BIFCAT_00481 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660949|gb|EEB21524.1| hypothetical protein BIFCAT_00481 [Bifidobacterium catenulatum DSM
           16992]
          Length = 317

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 84/324 (25%), Positives = 150/324 (46%), Gaps = 23/324 (7%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +  +  + +L ++++ERGLSK T+ +Y  D +++  +LA        I  I  ++  ++ 
Sbjct: 3   DFERMIRQFLAHIDVERGLSKATVSAYGADLKKYRQWLANR-----GINDITSVTTQDVE 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            +++         RS  R L+ I +F ++        +     ++  K +++LP  L   
Sbjct: 58  NYVAFLDESGESARSKARRLASIHAFHRFAVDEHSVADDVSAQVKAPKGASTLPDVLAID 117

Query: 133 QALTLVDNVLLHTSH---------ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           +   L++ + +  +              +  R+ A+L  +Y  G R+SEA      ++  
Sbjct: 118 EVARLLEAIPVSQNRACDDASLEVSDDPVMLRDKALLEFMYATGARVSEACGANLDDVDT 177

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPL 238
           +    R+ GKG K R+VP+     +AI  Y       L    + P     LF   RG+ L
Sbjct: 178 ESRIARLMGKGSKQRLVPVGSYACEAISRYVRSGRPILESKSKGPQERRALFLNKRGRRL 237

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +       IR       +      HTLRHSFATHL+  G D+R++Q +LGH  ++TTQIY
Sbjct: 238 SRQSVWEIIRVAGERAHIDKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIY 297

Query: 299 TNVNSKNGGDWMMEIYDQTHPSIT 322
           T+V+ +N    ++E Y  +HP   
Sbjct: 298 THVSPEN----LIETYLTSHPRAR 317


>gi|146281579|ref|YP_001171732.1| site-specific tyrosine recombinase XerD [Pseudomonas stutzeri
           A1501]
 gi|145569784|gb|ABP78890.1| integrase/recombinase XerD [Pseudomonas stutzeri A1501]
          Length = 298

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 92/304 (30%), Positives = 141/304 (46%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GL+  + ++Y  D   F  +L            +       I   ++ 
Sbjct: 9   IDRYLDALWLEKGLADNSREAYRNDLASFNGWLQERGVR------LAAAGREVILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R       RS  R LSG++ F +YL +    +    L +   +    LP+AL+E     L
Sbjct: 63  RLNNGYKARSTARFLSGLRGFYRYLLREGEISLDPTLRVDLPRLGRPLPKALSEADVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +             +  R+ A+L +LY CGLR++E +SLT + +   Q  LR  GKG+K 
Sbjct: 123 L-----AAPDTGDPLGLRDRAMLEVLYACGLRVTELISLTLEQVSMRQGVLRTFGKGNKE 177

Query: 198 RIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       +  Y  D     L       LF   RG+ +    F   I+   R  G+
Sbjct: 178 RLVPLGEEALHWLQRYQRDARDQLLAGRPSDVLFPSQRGEQMTRQTFWHRIKLHARGAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR++Q +LGH  LSTTQIYT++        + E++  
Sbjct: 238 ATGISPHTLRHAFATHLLNHGADLRTVQMLLGHSDLSTTQIYTHI----ARARLQELHAT 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|77464133|ref|YP_353637.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides
           2.4.1]
 gi|126462976|ref|YP_001044090.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides
           ATCC 17029]
 gi|77388551|gb|ABA79736.1| putative site-specific recombinase [Rhodobacter sphaeroides 2.4.1]
 gi|126104640|gb|ABN77318.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 306

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 131/313 (41%), Positives = 181/313 (57%), Gaps = 10/313 (3%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
            +        + WL +     G S  T+++Y  D   +L FLA +  E   ++ +  + +
Sbjct: 4   AIPPAARDALEAWLTHQRAIEGASAHTIRAYTADVTGWLAFLAGHLGEGYGLKRLASVPH 63

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++RA+++  R + +G RSL RSLS ++ F  +L +R+    + +L+ R  K    LPR 
Sbjct: 64  ADLRAWMAHERARGLGARSLARSLSAVRQFTGWLAEREGVDATAVLSARGPKFRRKLPRP 123

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+E  A  L+  V    + +  WI AR+ A++ LLYGCGLRISEAL L        +  L
Sbjct: 124 LSEADAKALLSTVAEDAAED--WIRARDLAVVTLLYGCGLRISEALGLPGTAHPLPE-VL 180

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKGDK R+VP LP  R A+  Y  LCPFDL   +   LFRG RG PLNP +  R + 
Sbjct: 181 RITGKGDKERLVPSLPVARAAVARYAALCPFDLASGV---LFRGARGGPLNPRLVARTME 237

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           + R  LGLP + T H LRHSFATHLL+ GGDLRSIQ +LGH  LSTTQ+YT V+    G 
Sbjct: 238 RARATLGLPPTATPHALRHSFATHLLNAGGDLRSIQELLGHASLSTTQVYTAVD----GA 293

Query: 309 WMMEIYDQTHPSI 321
            +ME+Y + HP  
Sbjct: 294 RLMEVYAKAHPRA 306


>gi|305667659|ref|YP_003863946.1| putative tyrosine recombinase [Maribacter sp. HTCC2170]
 gi|88709709|gb|EAR01942.1| putative tyrosine recombinase [Maribacter sp. HTCC2170]
          Length = 298

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 99/307 (32%), Positives = 155/307 (50%), Gaps = 16/307 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  Q++   L IERGLS  ++++Y  D  + + FL       + I  I+ +    ++AFI
Sbjct: 5   QALQDFQHYLRIERGLSDNSIKNYVWDVEKLVGFLDV---NDMVISPIK-IDKETVQAFI 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                + I  RS  R +SG+KSF  YL       ++ +  + + K    LP  L+E +  
Sbjct: 61  -YEIAKTINPRSQARIISGLKSFFNYLNFEDYRQDNPMDLLESPKIGRKLPDTLSEDEIN 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+D + L      +     N A+L  LYGCGLR+SE + L   ++  ++  +++ GKG+
Sbjct: 120 QLIDAIDLSKPEGER-----NRAMLETLYGCGLRVSELIGLKISDLFFEEDFIKVTGKGN 174

Query: 196 KIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R VP+    +K I  Y         +       LF   RGK L   +    I+QL   
Sbjct: 175 KQRFVPISDFNKKYINIYRKEIRVHQKIQKGFDDILFLNRRGKQLTRAMIFTIIKQLAVK 234

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           + L  S + HT RHSFATHLL NG DLR+IQ +LGH  ++TT++Y +V+  +  D M   
Sbjct: 235 IDLGKSISPHTFRHSFATHLLQNGADLRAIQQMLGHESITTTEVYMHVDRTHLADVM--- 291

Query: 314 YDQTHPS 320
            ++ HP 
Sbjct: 292 -NKYHPR 297


>gi|328541970|ref|YP_004302079.1| Tyrosine recombinase XerD [polymorphum gilvum SL003B-26A1]
 gi|326411720|gb|ADZ68783.1| Tyrosine recombinase XerD [Polymorphum gilvum SL003B-26A1]
          Length = 308

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 91/312 (29%), Positives = 143/312 (45%), Gaps = 19/312 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           R+++L+ L  ERG +  TL SY  D   F  FL             R  +  ++ A++S 
Sbjct: 8   RESFLEMLAAERGAAHNTLDSYRRDLDDFAAFL--------GTTATRDATAEDVSAYLSD 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S  R LS ++ + K+L       +     + + KK   LPR L+E +   L
Sbjct: 60  LAARGFAASSQARRLSALRQYFKFLYAEGERGDDPTRTLASPKKRQGLPRILSEAEVDRL 119

Query: 138 VDNVLLHTSHETKWIDARNSA-----ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           ++      + E +       A     +L +LY  GLR+SE ++L     + D   + I+G
Sbjct: 120 IEAACFDATLEHETPGRALRAQRLYTLLEVLYATGLRVSELVALPVGAALRDARLIGIRG 179

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLR 251
           KG K R+VPL P  ++A+  Y      +        LF             F R ++ L 
Sbjct: 180 KGGKERLVPLSPRAQEAMRAYVARRNAEGAYKGSPWLFPSHGESGHFTRQAFARDLKDLA 239

Query: 252 RYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           R +GL     + H LRH+FA+HLL NG DLR +Q +LGH  +STTQIYT+V  +     +
Sbjct: 240 RAVGLDAAKVSPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDER----L 295

Query: 311 MEIYDQTHPSIT 322
            ++ +  HP   
Sbjct: 296 RQLVEAHHPLAK 307


>gi|297537394|ref|YP_003673163.1| tyrosine recombinase XerC [Methylotenera sp. 301]
 gi|297256741|gb|ADI28586.1| tyrosine recombinase XerC [Methylotenera sp. 301]
          Length = 294

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 101/311 (32%), Positives = 165/311 (53%), Gaps = 19/311 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +    ++LQ+L  ERGLS LTL++Y  D  Q L  LA  T        +  ++ T+IR +
Sbjct: 1   MSHLDDYLQHLTFERGLSALTLKNYARDI-QLLESLADNT-------ALDTVTNTQIRRY 52

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I+    + +  +++ R+LS  + F  YL   K  T++ ++ +R  K + +LP+AL+  QA
Sbjct: 53  IATLHGRGLSGKTIARALSAWRGFYNYLTHHKGYTQNPVMGLRAPKSAKTLPQALSTDQA 112

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           +  VD            ++ R+ AIL L Y  GLR++E ++L    +   + T+ + GKG
Sbjct: 113 VKFVDI------KGDGPLERRDHAILELFYSSGLRLAELVNLDIGMLDFSEGTVTVTGKG 166

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K RIVP+      AI  +          +I    LF   +GK + P   Q  +++    
Sbjct: 167 NKTRIVPMGSHAVSAIQTWLQSRALIKIADINPNALFVTQQGKRITPRAVQYRVKEWSIK 226

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL +S   H LRHSFA+H+L +  DLR++Q +LGH  +STTQIYT+++ ++    +  I
Sbjct: 227 QGLNISMHPHLLRHSFASHVLQSSQDLRAVQEMLGHANISTTQIYTHLDFQH----LASI 282

Query: 314 YDQTHPSITQK 324
           YD  HP   +K
Sbjct: 283 YDSAHPRAKKK 293


>gi|284928595|ref|YP_003422327.1| hypothetical protein Dshi_5002 [Dinoroseobacter shibae DFL 12]
 gi|251736500|gb|ACT10200.1| hypothtical protein [Dinoroseobacter shibae DFL 12]
          Length = 308

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 130/314 (41%), Positives = 183/314 (58%), Gaps = 9/314 (2%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
             +S     + + WL +L         TL +Y+ D   FL FLA +     +   +R+++
Sbjct: 4   AALSPACADQLETWLTHLRALDDSPASTLSAYQRDVAGFLGFLARHDGGLASPARLRRIT 63

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
            +++RA+++  R + +G RSL R+LS +KSF +++ +R     + +L  R+ K    LPR
Sbjct: 64  QSDMRAWMAAERRRGLGARSLARALSAVKSFFRWVGERDGFEPTAVLAARSPKYQRKLPR 123

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L E  AL ++  V L  +    WI AR+ A++ LLYGCGLRISEAL LT       +  
Sbjct: 124 PLAEDAALEMIAQVELQAAD--SWIAARDVAVVTLLYGCGLRISEALGLTGAAAPLPE-V 180

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           L I+GKGDK RIVP+LP+ R A+  Y  L P  L  +   PLFRG RG  LNP V  + +
Sbjct: 181 LTIRGKGDKERIVPVLPAARTAVDTYLRLSPHPLEKD--GPLFRGKRGGQLNPRVIAKVM 238

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            Q R  LGLP S T H +RHSFATHLL+ GGDLR+IQ +LGH  LSTTQ YT V++    
Sbjct: 239 EQARMQLGLPSSATPHAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYTAVDATR-- 296

Query: 308 DWMMEIYDQTHPSI 321
             ++E+Y+  HP  
Sbjct: 297 --LLEVYNAAHPKA 308


>gi|85859268|ref|YP_461470.1| integrase/recombinase [Syntrophus aciditrophicus SB]
 gi|123725256|sp|Q2LT92|XERC_SYNAS RecName: Full=Tyrosine recombinase xerC
 gi|85722359|gb|ABC77302.1| integrase/recombinase [Syntrophus aciditrophicus SB]
          Length = 310

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 96/317 (30%), Positives = 154/317 (48%), Gaps = 19/317 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA--FYTEEKITIQTIRQLSYTE 70
           EL+KE   ++    +ER LS  T ++Y  D  QF I+L        ++  +  + + Y  
Sbjct: 3   ELIKEFDRYMD---LERNLSTHTRKNYLSDLNQFKIYLEENHRVPTELKTEAWQNVDYMM 59

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +RAF+     +++   ++ R L+ +++F KYL +++    + +  +   +    +P  L+
Sbjct: 60  VRAFLGALYRRRVKKVTIARKLASLRAFFKYLHQKRKIQCNPLEAVSTPRTEKYIPAVLS 119

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             +       VLL+          R+ AIL L Y  G+R+SE   +  +++   Q  +RI
Sbjct: 120 VDEIF-----VLLNLPFPEDVFGLRDRAILELFYSSGIRVSELTGINEEDMDFSQGLIRI 174

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-----QLPLFRGIRGKPLNPGVFQR 245
           +GKG K RIVP+     +A+  Y    P             +PLF   R   L+     R
Sbjct: 175 RGKGKKERIVPIGQPASEAVQRYMMKKPGSETSGKAVATCPVPLFVNRRQGRLSARSVAR 234

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            + +     GL    + HTLRHSFATHL+  G DLRSIQ +LGH  LSTTQ YT V+   
Sbjct: 235 ILSKYVSMSGLQKQISPHTLRHSFATHLMDAGADLRSIQELLGHESLSTTQKYTAVS--- 291

Query: 306 GGDWMMEIYDQTHPSIT 322
             + +M +YD+ HP   
Sbjct: 292 -VNRLMAVYDRAHPKAR 307


>gi|325922226|ref|ZP_08184012.1| tyrosine recombinase XerC subunit [Xanthomonas gardneri ATCC 19865]
 gi|325547296|gb|EGD18364.1| tyrosine recombinase XerC subunit [Xanthomonas gardneri ATCC 19865]
          Length = 305

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 91/316 (28%), Positives = 157/316 (49%), Gaps = 19/316 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK-----ITIQTIRQLSYT 69
           +   +++L  L++ER +S  TL +Y  D    + + A    E        +    QL+  
Sbjct: 1   MSSVEDFLAYLQVERQVSAHTLDAYRRDLAALVSWAAEQKGEDGAPLDAALLDSAQLTSA 60

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++R F++    + +  +SL+R LS  +S+  +L K      S    MR  K    LP+ L
Sbjct: 61  QLRQFVAAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIAASPAAAMRAPKAPRKLPQVL 120

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  +A+ LV+            +  R+ A+L L Y  GLR+SE  +L  +++  +   + 
Sbjct: 121 DADEAVRLVEVP------TDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLESGLVM 174

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG+K R+VP+ P    A+ E+      D     +  +F G  G  ++    Q  I+Q
Sbjct: 175 VLGKGEKQRLVPVGPHAITALREWL----RDSGGRAETHVFPGRAGGAISQRAVQIRIKQ 230

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           L    G+      H LRHSFA+H+L + GDLR +Q +LGH  ++TTQIYT+++ ++    
Sbjct: 231 LAVRQGMFKDVHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQH---- 286

Query: 310 MMEIYDQTHPSITQKD 325
           + ++YD  HP   +K 
Sbjct: 287 LAKVYDAAHPRAKRKK 302


>gi|308271353|emb|CBX27961.1| Tyrosine recombinase xerC [uncultured Desulfobacterium sp.]
          Length = 310

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 148/308 (48%), Gaps = 17/308 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT------IRQLSYTEIRA 73
           ++++ L  E+G S  T ++Y  D  +F  + A  + +    ++      +   +Y  IRA
Sbjct: 12  SFIETLASEKGYSVNTCRAYANDLYEFSSYAAEKSGQDSDEESEISTFMVEDANYLLIRA 71

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++     +K   +S+ R LS ++SF K+L +R I +++ +  +   K+  ++P  L   +
Sbjct: 72  YLGFLH-KKNKKKSIIRKLSALRSFFKHLVRRNIISDNPLELISTPKQDKNIPAYLTVDE 130

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D++   T         RN AI   +Y  G+R+SE   L   ++      +++ GK
Sbjct: 131 MFRLLDSIKTDT-----VSGLRNRAIFETMYSSGIRVSELAGLNVSSVDFGAGLIKVFGK 185

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K RIVP+       I  Y      D +  +   PLF       L      R + +   
Sbjct: 186 GGKERIVPIGSKAMDTIKSYRQKIQGDNILSDKNSPLFLNKNKGRLTTRSIARVLEKFVS 245

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              + +  + H LRHSFATH+L  G DLR +Q +LGH  LSTTQ YT+V    G D +ME
Sbjct: 246 EFCISVPVSPHALRHSFATHMLDAGADLRVVQELLGHKSLSTTQRYTHV----GIDRLME 301

Query: 313 IYDQTHPS 320
            YD+ HP 
Sbjct: 302 TYDKAHPR 309


>gi|15803430|ref|NP_289463.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           EDL933]
 gi|15833020|ref|NP_311793.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           str. Sakai]
 gi|168760022|ref|ZP_02785029.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4501]
 gi|217327493|ref|ZP_03443576.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. TW14588]
 gi|34222933|sp|Q8X574|XERD_ECO57 RecName: Full=Tyrosine recombinase xerD
 gi|12517420|gb|AAG58022.1|AE005519_8 site-specific recombinase [Escherichia coli O157:H7 str. EDL933]
 gi|13363238|dbj|BAB37189.1| site-specific recombinase [Escherichia coli O157:H7 str. Sakai]
 gi|189369440|gb|EDU87856.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4501]
 gi|209760580|gb|ACI78602.1| site-specific recombinase [Escherichia coli]
 gi|217319860|gb|EEC28285.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. TW14588]
 gi|326339022|gb|EGD62837.1| Tyrosine recombinase XerD [Escherichia coli O157:H7 str. 1044]
          Length = 298

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 149/309 (48%), Gaps = 17/309 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L  L +E+ L++ TL +Y  D    + +L           T+      +++A 
Sbjct: 5   LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG------LTLATAQSDDLQAL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R        S  R LS ++   +YL + K   +    ++ + K    LP+ L+E Q 
Sbjct: 59  LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+   L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG
Sbjct: 119 ERLLQAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y     P+ LN      LF   R + +        I+     
Sbjct: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTLWHRIKHYAVL 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHPSI 321
           ++ Q HP  
Sbjct: 290 LHQQHHPRA 298


>gi|27364549|ref|NP_760077.1| site-specific tyrosine recombinase XerC [Vibrio vulnificus CMCP6]
 gi|320154951|ref|YP_004187330.1| tyrosine recombinase XerC [Vibrio vulnificus MO6-24/O]
 gi|34222789|sp|Q7ZAI9|XERC_VIBVU RecName: Full=Tyrosine recombinase xerC
 gi|71153412|sp|Q7MQB9|XERC_VIBVY RecName: Full=Tyrosine recombinase xerC
 gi|27360668|gb|AAO09604.1| tyrosine recombinase XerC [Vibrio vulnificus CMCP6]
 gi|319930263|gb|ADV85127.1| tyrosine recombinase XerC [Vibrio vulnificus MO6-24/O]
          Length = 316

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 81/315 (25%), Positives = 152/315 (48%), Gaps = 16/315 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L K    + + L  E+GLS  T ++Y+         L       + ++   Q+    +R 
Sbjct: 13  LRKPLDQFYEYLRAEKGLSLHTQRNYKQQLETMAEHL-----HSMGLKAWPQVDAGWVRQ 67

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
              K   + +   S+   LS ++SF  +L  R I T +    +   +K   LP+ L+  +
Sbjct: 68  LAGKGMREGMKASSIATRLSSLRSFFDFLILRGILTANPAKGVSAPRKKRPLPKNLDVDE 127

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++       +E   +  R+ AI+ L+YG GLR++E + +  +++      +R+ GK
Sbjct: 128 VNQLLEV------NEDDPLAIRDRAIMELMYGAGLRLAELVDIDVRDVHLRSGEIRVIGK 181

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R VP      + + ++  +    L    +  LF    G  ++    Q+ + +  + 
Sbjct: 182 GNKERKVPFAGMAVEWVGKWLKVRSG-LADPSEPALFVSKLGTRISHRSVQKRMAEWGQK 240

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    T H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ ++    + ++
Sbjct: 241 QAVASHITPHKLRHSFATHILESSNNLRAVQELLGHENISTTQIYTHLDFQH----LADV 296

Query: 314 YDQTHPSITQKDKKN 328
           YDQ HP   +K  ++
Sbjct: 297 YDQAHPRARKKSSQH 311


>gi|219669469|ref|YP_002459904.1| tyrosine recombinase XerD [Desulfitobacterium hafniense DCB-2]
 gi|219539729|gb|ACL21468.1| tyrosine recombinase XerD [Desulfitobacterium hafniense DCB-2]
          Length = 322

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 92/326 (28%), Positives = 151/326 (46%), Gaps = 29/326 (8%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
              + +L  L +ERGLS  T  SYE D R+F  FL    +  I  +        ++  F+
Sbjct: 7   AWLKKYLSYLNVERGLSPNTRNSYERDLRKFTAFLQQRGKNIIACEG------NDLFLFL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            + + Q    R+L R L+ ++ F  +L   ++  +     +   K    LP  L+E    
Sbjct: 61  LQEKNQGRSARTLARYLATLRGFFAFLLGEEMREDDPTEYLSTPKLEQHLPHVLSEGSIS 120

Query: 136 TLV------------------DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
            L+                        +  + K +  RN A++ +LYGCGLR+SE + L 
Sbjct: 121 KLMGEGGDRDKEGPKPGKSSKKAGDSDSEGKDKGLLMRNMAMIEVLYGCGLRVSELVGLK 180

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGK 236
             +I+ +  TLR +GKG+K RIVP+     + +  Y           +    LF   RG 
Sbjct: 181 VSDIIFETRTLRCRGKGNKERIVPIGEYALEVLQNYLEHDRERLRGKHKTEVLFLNSRGT 240

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L        +++  +  G+  +   H  RHSFATHLL +G DLRS+Q +LGH  ++TTQ
Sbjct: 241 ALTRQGIWDILKKWAQTHGVQENIYPHKFRHSFATHLLDHGADLRSVQEMLGHADIATTQ 300

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSIT 322
           IYT+++ +     ++E++ + HP   
Sbjct: 301 IYTHLSRQR----LLEVFRKAHPRAD 322


>gi|212703032|ref|ZP_03311160.1| hypothetical protein DESPIG_01070 [Desulfovibrio piger ATCC 29098]
 gi|212673620|gb|EEB34103.1| hypothetical protein DESPIG_01070 [Desulfovibrio piger ATCC 29098]
          Length = 327

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 107/331 (32%), Positives = 169/331 (51%), Gaps = 17/331 (5%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           E + + E +      E +++L  L+++RGLS  T  +Y  D RQ  +FLA   +   ++ 
Sbjct: 6   EKDTMEEELDPRTTLEIESFLAWLDVQRGLSPTTQIAYGTDLRQLALFLA---QRGASLA 62

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
              ++S   I+A++++         ++ R L+  ++F +Y ++   T  +    +RN K+
Sbjct: 63  RPAEVSKKHIQAWLARLYALGEAKSTMARKLAAARTFFRYQQRMGRTENNVAAQVRNPKQ 122

Query: 122 SNSLPRALNEKQALTLVDNVLLHT--------SHETKWIDARNSAILYLLYGCGLRISEA 173
               PR LN  QA  ++D                    + AR+ A+  LLYG GLRISEA
Sbjct: 123 EQRHPRVLNVDQAFAVLDTPDALAGTGSPRIPPATGDALAARDHALAELLYGSGLRISEA 182

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
           L L   ++  D+S +R+ GKG + R+ PL  +   A+  + +     L    +  LF G 
Sbjct: 183 LGLDVTDLRLDESVVRVFGKGARERMSPLSDTSVTALRAWLEQRGT-LAPEGEKALFVGA 241

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           RG  L+     R I +L R  G+    + H LRHSFATHLL  G DLRS+Q +LGH RL+
Sbjct: 242 RGGRLDRREAMRRIERLCRNAGVE-PVSPHALRHSFATHLLDAGADLRSVQELLGHQRLT 300

Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           TTQ YT V+ +     +M +YD+ HP   +K
Sbjct: 301 TTQRYTRVSLER----LMHLYDEAHPRAQKK 327


>gi|21673437|ref|NP_661502.1| integrase/recombinase XerD [Chlorobium tepidum TLS]
 gi|34222899|sp|Q8KET0|XERD_CHLTE RecName: Full=Tyrosine recombinase xerD
 gi|21646539|gb|AAM71844.1| integrase/recombinase XerD [Chlorobium tepidum TLS]
          Length = 304

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 95/306 (31%), Positives = 150/306 (49%), Gaps = 13/306 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  + +L  L +ER  S  T  SY  D  ++L +L     +        + +  +IR FI
Sbjct: 10  KTLETFLNYLTLERNFSGNTRASYLNDLGRYLAWLHECGVKP------EEAAPGDIRKFI 63

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            +     +   S+ R++S I+SF K+L   ++ T +   N+   K +  LP  L  ++  
Sbjct: 64  QELHEIGLEASSIARNISAIRSFHKFLLTERLATMNPAENIHQPKLARYLPSVLTIEEMA 123

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           TL+D  L    H T     R+ A+L  LY  G+R+SE L L+  N+  D   +R+ GKG 
Sbjct: 124 TLLDAPLKR--HPTSTFMLRDKAMLEFLYATGVRVSELLGLSRLNLHMDDGFVRVFGKGS 181

Query: 196 KIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K R+VP+  +    +  Y D L P  ++      +F   RG PL+       +R+     
Sbjct: 182 KERLVPVGQTAISWMKRYLDELRPGMMSATSHDTIFLNSRGGPLSRMAAWNIVREHAVIA 241

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+    + HT RHSFATHLL  G DLR +Q +LGH  +  TQIYT+++      ++ E++
Sbjct: 242 GIEKPISPHTFRHSFATHLLEGGADLRVVQEMLGHSSIIATQIYTHID----RSFIKEVH 297

Query: 315 DQTHPS 320
              HP 
Sbjct: 298 KTFHPR 303


>gi|327402648|ref|YP_004343486.1| tyrosine recombinase XerD subunit [Fluviicola taffensis DSM 16823]
 gi|327318156|gb|AEA42648.1| tyrosine recombinase XerD subunit [Fluviicola taffensis DSM 16823]
          Length = 301

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 89/307 (28%), Positives = 156/307 (50%), Gaps = 17/307 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + ++  L+IER L++ ++ +Y+ D  +   F   YT       +   +    ++ F+++
Sbjct: 8   IKQFVHYLKIERSLAENSIFAYQQDIAKLRDFCESYT------LSPEHIQTGHLKQFVAE 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +  RS  R +SG K F  +L   +I  +     +   K    LP  L  ++   L
Sbjct: 62  LYDMGLSARSQARIISGWKQFFDFLVLEEIRKDDPSEALELPKIGRKLPEVLTIEEIDAL 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D + L ++        RN AIL  LY CG+R+SE +SL  ++   ++  +R+ GKG+K 
Sbjct: 122 IDAIDLSSNE-----GQRNKAILETLYSCGIRVSELVSLRFEDCFFEEGFIRVIGKGNKE 176

Query: 198 RIVPLLPSVRKAILEY--YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R+VP+ PSV + + EY  +D     +    +  +F   RG  L   +    I++L    G
Sbjct: 177 RLVPVSPSVIEEVGEYVEHDRSNLLIKKGHEQFVFLNRRGAQLTRVMIFTIIKRLADLAG 236

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + + HT RHSFATHL+  G +LR+IQ +LGH  ++TT+IYT+++ +    ++ E   
Sbjct: 237 IKKNISPHTFRHSFATHLIEGGANLRAIQDMLGHESITTTEIYTHLDQR----FLREAIL 292

Query: 316 QTHPSIT 322
             HP  T
Sbjct: 293 SYHPRNT 299


>gi|170765975|ref|ZP_02900786.1| tyrosine recombinase XerD [Escherichia albertii TW07627]
 gi|170125121|gb|EDS94052.1| tyrosine recombinase XerD [Escherichia albertii TW07627]
          Length = 298

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 149/309 (48%), Gaps = 17/309 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L  L +E+ L++ TL +Y  D    + +L           T+      +++A 
Sbjct: 5   LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG------LTLATAQSDDLQAL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R        S  R LS ++   +YL + K   +     + + +    LP+ L+E Q 
Sbjct: 59  LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAYLASPRLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+   L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG
Sbjct: 119 ERLLQAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y     P+ LN      LF   R + +    F   I+     
Sbjct: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +
Sbjct: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289

Query: 313 IYDQTHPSI 321
           ++ Q HP  
Sbjct: 290 LHQQHHPRA 298


>gi|149910171|ref|ZP_01898817.1| tyrosine recombinase [Moritella sp. PE36]
 gi|149806757|gb|EDM66721.1| tyrosine recombinase [Moritella sp. PE36]
          Length = 296

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 91/310 (29%), Positives = 149/310 (48%), Gaps = 16/310 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E ++  + +L  +  ERGLS  TL SY  D  Q+  +L  + ++ +T      +   EI+
Sbjct: 2   EKIEIIEQFLDIMWHERGLSDNTLSSYRNDLNQYHHWLVQHKQQLLT------VDRLEIQ 55

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           AF++ R        S  R LS I+ F +YL + ++  +     + + K    LP  L+E 
Sbjct: 56  AFMASRFDLGYKASSTARQLSAIRRFYQYLYREQMRDDDPTALLISPKLPQRLPDDLSEA 115

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L     L        I  R+ A++ +LY  GLR+SE + L+ +++   Q  +R+ G
Sbjct: 116 EVNAL-----LAAPELDDPIQLRDKAMMEVLYATGLRVSELVGLSMESVSLRQGLVRVTG 170

Query: 193 KGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG K R+VP+          +        L       +F   RG  +    F   ++   
Sbjct: 171 KGGKERLVPMGEEAVYWTERFIAEGRATLLKGLTSDVVFPSRRGNFMTRQTFWHRLKHYS 230

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +  G+    + HTLRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V +      + 
Sbjct: 231 QVAGITTHLSPHTLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATAR----LE 286

Query: 312 EIYDQTHPSI 321
           +++ + HP  
Sbjct: 287 QLHSEHHPRA 296


>gi|118594353|ref|ZP_01551700.1| Tyrosine recombinase XerD [Methylophilales bacterium HTCC2181]
 gi|118440131|gb|EAV46758.1| Tyrosine recombinase XerD [Methylophilales bacterium HTCC2181]
          Length = 295

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 92/306 (30%), Positives = 156/306 (50%), Gaps = 16/306 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K   +++ +L +E GLSK TL SY  D   F  +L    ++KI +  + +L   EI+ F+
Sbjct: 4   KIIDDFIDHLWLEDGLSKNTLNSYRFDLIIFDSWLGE--QKKIAMMDVSEL---EIQEFL 58

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           + +       RS+ R L+ ++ F +Y  + K   +   L ++  K   SLP++L+E++  
Sbjct: 59  AFKFPSSKS-RSISRLLATLRRFFRYQLREKKIQKDPTLKIQTPKIPKSLPKSLSEEEVE 117

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +L+D       +       R+ ++L LLY CGLR++E + +    ++     +R+ GKG 
Sbjct: 118 SLLD-----APNLDSSSGLRDRSMLELLYACGLRVTELVDIQLTEVILSDGVIRVTGKGS 172

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K R+VP+       I +Y      D L       LF   RG  +    F   I++     
Sbjct: 173 KTRLVPMGEEAVDWIKKYIAEARDDILRKKTSKFLFVTNRGGAMTRQAFWYVIKKYAVIA 232

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            +    + H LRH+FATHL+++G DLR +Q +LGH  +STTQIYT+V  +     + +I+
Sbjct: 233 NINKPMSPHILRHAFATHLINHGADLRVVQMLLGHTDISTTQIYTHVARER----LKKIH 288

Query: 315 DQTHPS 320
            + HP 
Sbjct: 289 QEHHPR 294


>gi|95929136|ref|ZP_01311880.1| Tyrosine recombinase XerD [Desulfuromonas acetoxidans DSM 684]
 gi|95134634|gb|EAT16289.1| Tyrosine recombinase XerD [Desulfuromonas acetoxidans DSM 684]
          Length = 298

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 93/299 (31%), Positives = 150/299 (50%), Gaps = 16/299 (5%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
            L IERGLS  TL+SY  D ++++ FL     E+  I  +  +   ++  F ++ + Q +
Sbjct: 13  YLSIERGLSANTLESYARDLQRYIGFL-----EERHINDVIAIRQNDVLDFFTELKEQGM 67

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
           G RS  R L+ ++ F  Y         + +  +   K   +LP  L+      L+D    
Sbjct: 68  GVRSRARLLAALRGFHHYAVDEYQLANNPVARLTTPKMLQTLPDTLSPADVDALLDIN-- 125

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
               + + +  R+ A+L LLY  G+R+SE + L   ++  +   LR+ GKG K RI+P+ 
Sbjct: 126 ---DDGQALTRRDIAMLELLYATGMRVSELVGLKLDDLHLNSGYLRVFGKGSKQRIIPIG 182

Query: 204 PSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
                 + +Y      +L+   N+   +F    GK L    F + I++     G+  + T
Sbjct: 183 EIAIDTLRDYLARVRPELDRQRNLSPCVFLNRSGKGLTRQGFWKMIKRRALEAGITKNVT 242

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
            HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT+V  ++    +  ++   HP 
Sbjct: 243 PHTLRHSFATHLLENGADLRVVQMLLGHVDISTTQIYTHVTREH----VRHVHQSFHPR 297


>gi|223938389|ref|ZP_03630283.1| integrase family protein [bacterium Ellin514]
 gi|223892958|gb|EEF59425.1| integrase family protein [bacterium Ellin514]
          Length = 337

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 97/335 (28%), Positives = 157/335 (46%), Gaps = 22/335 (6%)

Query: 2   EGNNLPEIV------SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE 55
           EG+  PE        S    K  + +L +L  +RG S  T ++Y       + F  ++ +
Sbjct: 10  EGDPTPEPAEVSGTNSASEEKWIKTFLHHLAADRGASIYTQRNYRQTL---VEFYGWHRK 66

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           E+        L   + R ++       +   +++     +++F K+L +  + + S I N
Sbjct: 67  ERGVEPAWENLHRDDFRGYLRFLGRGNLSRAAIQLRFCALRTFYKFLIRHGVVSASPIKN 126

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVL--LHTSHETKW-------IDARNSAILYLLYGC 166
           +   K    LP+ L  +Q + L+   L  L T  +          +  R+ AIL  +Y C
Sbjct: 127 VSLPKMEKRLPKFLTAQQMVELLGAPLKPLATPKKKGPGRPISATVCYRDVAILETIYSC 186

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           GLRISE   LT Q+I  ++  +R++GKG K R VP+      AI  Y+            
Sbjct: 187 GLRISELCGLTAQDIDWNEQLVRVRGKGKKERQVPIGEPALTAIRNYWSTLEQSPGGGSP 246

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           + L    +   L+P V Q+ +++     GL  S T H LRHS+ATH+L  G DLRS+Q +
Sbjct: 247 VFLGETEKAAALSPRVLQQRLKKYLALAGLDPSLTPHKLRHSYATHMLDAGADLRSVQEL 306

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           LGH  L TTQ+YT+V+++     +   YD  HP  
Sbjct: 307 LGHAHLITTQVYTHVSTER----LKRAYDSAHPRA 337


>gi|189439098|ref|YP_001954179.1| Integrase [Bifidobacterium longum DJO10A]
 gi|189427533|gb|ACD97681.1| Integrase [Bifidobacterium longum DJO10A]
          Length = 308

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 86/310 (27%), Positives = 145/310 (46%), Gaps = 17/310 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L ++ +ERGL+  T+ +YE D  +++ +L     E   I     ++  ++  +I+  
Sbjct: 10  EQFLVHIGVERGLATATVTAYESDIAKYIDWL-----ETRGIHEPDAITKQDVEDYIAAL 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  RS  R L+ I  F ++   +   T      ++  K +++LP  L   +   L+
Sbjct: 65  DQAGESARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLL 124

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D         T  +  R+ A+L  +Y  G R+SEA      +I  D+   R+ GKG K R
Sbjct: 125 DA--AAVGGSTDPVVLRDKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQR 182

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL------PLFRGIRGKPLNPGVFQRYIRQLRR 252
           +VPL     +AI  Y +    +L             LF   RGK ++       ++    
Sbjct: 183 LVPLGSYACRAITAYLNAGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGE 242

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+      HTLRHSFATHL+  G D+R++Q +LGH  ++TTQIYT+V+ +     ++E
Sbjct: 243 RAGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPET----LIE 298

Query: 313 IYDQTHPSIT 322
            Y  +HP   
Sbjct: 299 TYLTSHPRAR 308


>gi|172057038|ref|YP_001813498.1| tyrosine recombinase XerD [Exiguobacterium sibiricum 255-15]
 gi|171989559|gb|ACB60481.1| tyrosine recombinase XerD [Exiguobacterium sibiricum 255-15]
          Length = 294

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 156/308 (50%), Gaps = 14/308 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++ + ++  L IER +S  T  +Y  D  Q+L  L     E+  I +  +++   I  
Sbjct: 1   MRQQLETFIDYLVIERQMSANTAAAYRNDLNQYLTTL-----EQQGISSAEEVTRHHIVL 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            I      +    +++RS S I+SF ++L +R+I       ++   K    LP   ++  
Sbjct: 56  HIESLLQAQKSRATVRRSTSSIRSFHQFLVERQIVRHDPSRHLDLPKPDKKLPVVWSQTD 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
            + L+D+V+         +  R++A+L LLYG G+R+SE L LT  ++  +   L   GK
Sbjct: 116 IVRLLDSVV-----GNDPLVRRDAAMLELLYGTGMRVSELLQLTLSDLQLELGYLSCLGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K RI+P+  +   ++  Y +L    L       +F   RG  L+   F + I++  + 
Sbjct: 171 GNKTRIIPISQTAIDSVSVYLELARNSLGGRQTDYVFLNSRGDRLSRQGFWKMIKRRAKE 230

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    T H LRHSFATHLL NG DLR +Q +LGH  LSTTQ+YT+VN       + ++
Sbjct: 231 AGIEKDITPHVLRHSFATHLLENGADLRVVQEMLGHADLSTTQMYTHVNKAR----LHDV 286

Query: 314 YDQTHPSI 321
           Y   HP  
Sbjct: 287 YKNHHPRA 294


>gi|34222990|sp|Q93C64|XERD_LACCA RecName: Full=Tyrosine recombinase xerD
 gi|15778434|gb|AAL07436.1|AF413208_1 tyrosine recombinase [Lactobacillus casei]
          Length = 293

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 88/302 (29%), Positives = 149/302 (49%), Gaps = 17/302 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +++  L++ERGL++ T  SY+ D   F+ +L+   +            +  I+AF+  + 
Sbjct: 7   DFIHYLDVERGLARTTQVSYQQDLTTFMAWLSDQKQTTFPE------DFGVIQAFLKHQN 60

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
             K    S+ R +S ++ F ++L +        +  +   KK+  LP  L+  +   L+ 
Sbjct: 61  DTK-APASVSRMISALRKFYRFLLREGAIKSDPMTKIDTPKKAQHLPATLSGTEIDALM- 118

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                    TK +  R+ AI  L+Y  GLR+SE + L    +    + L++ GKGDK R+
Sbjct: 119 ----AKPDTTKPLGLRDRAIFELMYATGLRVSEVVGLRLDQLHLAMNLLQVTGKGDKERL 174

Query: 200 VPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+ P     +  Y     P  +       +F    G  L   V  + ++     +G+  
Sbjct: 175 VPISPQAADWVNRYLQESRPRLIKHQQPKAVFVNFHGHALTRQVIWKNLKAYIASVGIEK 234

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             T HTLRHSFAT LL NG DLR +Q +LGH  +STTQIYT++++++    ++ +Y +TH
Sbjct: 235 DVTPHTLRHSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQH----LVAVYHKTH 290

Query: 319 PS 320
           P 
Sbjct: 291 PR 292


>gi|262172887|ref|ZP_06040565.1| tyrosine recombinase XerC [Vibrio mimicus MB-451]
 gi|261893963|gb|EEY39949.1| tyrosine recombinase XerC [Vibrio mimicus MB-451]
          Length = 310

 Score =  261 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 82/327 (25%), Positives = 160/327 (48%), Gaps = 17/327 (5%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+   L   +   L +  + +   L  E+GLS  T ++Y+        +LA     ++ +
Sbjct: 1   MKTEEL-TPLPNALAQPLERFYAYLHSEKGLSLYTQRNYKQQLETMARYLA-----QMGL 54

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            +  QL    +R  +   + Q +   S+   LS ++SFL +L  R     +    +   +
Sbjct: 55  TSWPQLDAAWVRQLVVLGKRQGMKASSISTRLSSLRSFLDFLILRGELQANPAKGVSAPR 114

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K   LP+ L+  +   L++        +   +  R+ AI+ L+YG GLR++E +S+  ++
Sbjct: 115 KQRPLPKNLDVDEMAQLLEVS------DDDPLSIRDRAIMELMYGSGLRLAELVSIDVKD 168

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           +      +R+ GKG+K R V      ++ + ++  L     N + +  LF    G  ++ 
Sbjct: 169 VNLRDGEIRVIGKGNKERKVWFAGQAQEWVGKWLKLRSQLANSD-ETALFVSKLGTRISH 227

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              Q+ + +  +   +    + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+
Sbjct: 228 RSVQKRMAEWGQKQAVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH 287

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKDKK 327
           ++ ++    + ++YDQ HP   +K+K 
Sbjct: 288 LDFQH----LAQVYDQAHPRARKKNKD 310


>gi|300721450|ref|YP_003710725.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC
           19061]
 gi|297627942|emb|CBJ88488.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC
           19061]
          Length = 304

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 84/311 (27%), Positives = 149/311 (47%), Gaps = 18/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL   + +L+ L +ER LS LT+  Y                 KI I   + L    +R 
Sbjct: 8   LLAPVEAFLRYLRVERRLSPLTITHYRHHLTVLAEISL-----KIGISEWQALDPVNVRL 62

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+S+ R   +   S+   LS ++SFL ++  +     +    +   +K   LP+ ++  +
Sbjct: 63  FVSRSRRAGLESASIALRLSALRSFLDWMVMQGKLAANPAKMVSAPRKKRHLPKNMDVDE 122

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++  L         +  R+  +L ++YG GLR+SE + L  +++  D   + ++GK
Sbjct: 123 VNQLLNINL------NDPLSVRDRTMLEVMYGAGLRLSELVGLNWRDVDLDSGDVWVRGK 176

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRR 252
           G K R VP     ++ +  + ++   +L       +F   +  K ++    Q+   Q   
Sbjct: 177 GSKERKVPFGRMAQEWLQRWLEMR--ELFEPENDAVFISSKSGKRISARNVQKRFEQWGI 234

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+      H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++    + +
Sbjct: 235 RQGVNSHINPHKLRHSFATHILESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LTK 290

Query: 313 IYDQTHPSITQ 323
           +YD  HP   +
Sbjct: 291 VYDVAHPRAKR 301


>gi|238918092|ref|YP_002931606.1| site-specific tyrosine recombinase XerC [Edwardsiella ictaluri
           93-146]
 gi|238867660|gb|ACR67371.1| tyrosine recombinase XerC, putative [Edwardsiella ictaluri 93-146]
          Length = 300

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 88/318 (27%), Positives = 152/318 (47%), Gaps = 21/318 (6%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +PE +S  ++     +LQ + +ER LS  T+++Y    RQ    +A   E    +     
Sbjct: 1   MPESLSTPVVA----FLQMMRVERQLSPRTVETYR---RQLAASVALLLEG--GLCDWTA 51

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           L    +R+ +++ R Q +   SL   LS ++SFL +   R   T +    +   ++   L
Sbjct: 52  LDTVRVRSLVARSRRQGLEPASLALRLSALRSFLDWQVSRGALTANPAKGVSAPRQGRHL 111

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P+ L+      L+D        E   +  R+ A+L ++YG GLR+SE + L  ++     
Sbjct: 112 PKNLDVDDVNRLLDI------DEGDTLAVRDRAMLEVMYGGGLRLSELVGLDCRHADLTT 165

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             + + GKG K R +P+     + + ++  L       +    LF    G  ++P   Q+
Sbjct: 166 GEVWVLGKGSKERRLPVGREAVRWLQKWLSLRLSLQPQD--DALFVSRLGGRISPRSVQK 223

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
              +     G+      H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++
Sbjct: 224 RFAEWGVKQGVTSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH 283

Query: 306 GGDWMMEIYDQTHPSITQ 323
               +  +YD  HP   +
Sbjct: 284 ----LATVYDAAHPRAKR 297


>gi|218710942|ref|YP_002418563.1| site-specific tyrosine recombinase XerC [Vibrio splendidus LGP32]
 gi|254799361|sp|B7VMD2|XERC_VIBSL RecName: Full=Tyrosine recombinase xerC
 gi|218323961|emb|CAV20323.1| Integrase/recombinase XerC [Vibrio splendidus LGP32]
          Length = 310

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 80/314 (25%), Positives = 153/314 (48%), Gaps = 16/314 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L K    + + L  E+GLS  T ++Y+         L       + ++   Q+    +R 
Sbjct: 13  LQKPLSRFYEYLRSEKGLSLHTQRNYKQQLETMAAHLVT-----LGLKDWSQVDAAWVRQ 67

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             SK   + +   S+   LS ++SF  +L  R   T +    +   +K   LP+ L+  +
Sbjct: 68  LASKGMREGMKASSIATRLSSLRSFFDFLVLRGEMTANPAKGVSAPRKQRPLPKNLDVDE 127

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D       +E   +  R+ A++ ++YG GLR++E + +  ++++  Q  +R+ GK
Sbjct: 128 VGQLLDV------NEDDPLSIRDRAMMEVMYGAGLRLAELVGINLKDVLGRQGEIRVIGK 181

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GDK R  P     ++ + ++  +    L    +  LF    G  ++    Q+ + +  + 
Sbjct: 182 GDKERKAPFSGLAKEWVDKWLKVR-GALASPGETALFVSKLGTRISHRSVQKRMEEWGKK 240

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    + H LRHSFATH+L +  +LR++Q +LGH  +STTQ+YT+++ ++    + + 
Sbjct: 241 QSVASHISPHKLRHSFATHVLESSQNLRAVQELLGHENISTTQVYTHLDFQH----LAQA 296

Query: 314 YDQTHPSITQKDKK 327
           YDQ HP   +K+K 
Sbjct: 297 YDQAHPRARKKNKD 310


>gi|291615720|ref|YP_003518462.1| XerC [Pantoea ananatis LMG 20103]
 gi|291150750|gb|ADD75334.1| XerC [Pantoea ananatis LMG 20103]
          Length = 301

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 87/314 (27%), Positives = 150/314 (47%), Gaps = 17/314 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S  L +    +L++L++ER LS LTL SY       +        +++ I    QL   
Sbjct: 1   MSSVLQETVDGFLRHLKVERQLSPLTLSSYARQLAALVTIA-----DEMKISAWSQLDPA 55

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R+  ++ R   +   SL   LS ++SFL +   R +   +    +   +    LP+ +
Sbjct: 56  MVRSMAARSRRAGLAASSLALRLSALRSFLDWQVSRDMLAANPAKGIATPRNGRHLPKNI 115

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +      L++  L      T  +  R+  +L ++YG GLR+SE +++  +++  +   + 
Sbjct: 116 DVDDVNQLLEIDL------TDPLAIRDRTMLEVMYGGGLRLSELVNMDCRHVDLEAGEVW 169

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG K R VP+  +    I ++  L            LF   RG  ++    Q+   +
Sbjct: 170 VLGKGSKERRVPIGRTAVSWIQQWLPLRT--AFNPGDDALFLSSRGSRISARNVQKRFAE 227

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                GL      H LRHSFATHLL + GDLR++Q +LGH  LSTTQIYT+++ ++    
Sbjct: 228 WGIKQGLSSHIHPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQH---- 283

Query: 310 MMEIYDQTHPSITQ 323
           +  +YD  HP   +
Sbjct: 284 LASVYDAAHPRAKR 297


>gi|189499779|ref|YP_001959249.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides BS1]
 gi|189495220|gb|ACE03768.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides BS1]
          Length = 305

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 96/304 (31%), Positives = 152/304 (50%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             ++L  L +ER  S  T+ SY  D  ++L+F+    ++      I+ +  T+I+ FI +
Sbjct: 13  LDSFLNYLTLERNFSSHTITSYANDLNRYLLFMQHSEKQ------IKAVVLTDIQHFIQE 66

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +  RS+ R++S I+SF K+L +  I  E+   ++   K    LP  L+  +   L
Sbjct: 67  LHEAGLESRSISRNISAIRSFHKFLIRENILEENAAKSLHQPKPGLHLPTVLSVDEVFRL 126

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D  LL       ++  R+  +L LLY  G+R+SE +++   N   D    RI GKG K 
Sbjct: 127 LDAPLLEKPPGKYFL--RDKVLLELLYATGVRVSELINIQQSNCYLDAGFARIFGKGSKE 184

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +  + I  Y   L     N      LF   RGK L+       +R+L    GL
Sbjct: 185 RLVPVGHTAIEWIRRYQQELRLNMANRESGDYLFLNARGKQLSRMSAWNIVRRLSSVAGL 244

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL  G DLR++Q +LGH  +  TQIYT+++      ++ E +  
Sbjct: 245 TKKISPHTLRHTFATHLLEGGADLRAVQEMLGHSSIIATQIYTHID----RSFIKEAHKT 300

Query: 317 THPS 320
            HP 
Sbjct: 301 FHPR 304


>gi|303245447|ref|ZP_07331731.1| tyrosine recombinase XerD [Desulfovibrio fructosovorans JJ]
 gi|302493296|gb|EFL53158.1| tyrosine recombinase XerD [Desulfovibrio fructosovorans JJ]
          Length = 307

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 88/319 (27%), Positives = 152/319 (47%), Gaps = 19/319 (5%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N  P I S       +N+L++L + +GL++ ++++Y  D   FLIFL  +        ++
Sbjct: 5   NTSPAIPSHP---WVENYLEHLIVAKGLAEHSIKAYSTDITDFLIFLNDHAG------SL 55

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
             ++   +  ++   R++ +  RSL R LS ++ F  Y        ES    + N K   
Sbjct: 56  ETVTDDTLFLYLMHLRSRGLASRSLARHLSALRGFFAYAAGEGWLPESPAALIENPKLPR 115

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            LP  L+      L+D            +  R+  +L LLY  GLR+SE + L   +   
Sbjct: 116 LLPDVLSRDDVARLLD-----APDTATPLGYRDRTMLELLYAAGLRVSELIGLALTDFDA 170

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
               LR+ GKG K R++P+    ++ +  Y        +   Q  +F    G+ L+    
Sbjct: 171 QAGLLRVFGKGSKERLIPIHALAQEFLSTYIQTIRGAFHPKEQF-VFLNRSGRGLSRQAV 229

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            + I++     G+ L  + H+LRHSFATHLL  G DLR++Q++LGH  +S T+IYT+V +
Sbjct: 230 WKGIKRHALVAGISLHISPHSLRHSFATHLLDGGADLRTVQTLLGHADISATEIYTHVQA 289

Query: 304 KNGGDWMMEIYDQTHPSIT 322
           +     ++ ++   HP   
Sbjct: 290 ER----LLAVHRAHHPRSR 304


>gi|326402863|ref|YP_004282944.1| tyrosine recombinase XerC [Acidiphilium multivorum AIU301]
 gi|325049724|dbj|BAJ80062.1| tyrosine recombinase XerC [Acidiphilium multivorum AIU301]
          Length = 313

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 121/322 (37%), Positives = 175/322 (54%), Gaps = 10/322 (3%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M G+  P   + +    R  +L  L  ER  + LT+ +Y  D  +FL F+  +   + T 
Sbjct: 1   MSGSR-PSGPAADAQALRVEFLDFLAGERRAAALTVSTYGADLAEFLGFVTRHIGAEPTG 59

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             +  LS  + RA+++K  +  +G+ +  + LS ++SF ++L++R          +R  K
Sbjct: 60  ADLAALSLADFRAWLAKAASDGVGNATRAKKLSAVRSFFRWLRQRHGMINEAPGLLRTPK 119

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LPRAL    A  +VD+  L     +  + AR++A++ LLYG GLRI EAL L   +
Sbjct: 120 SRRPLPRALTAPDAAAVVDS--LGDDAASPALAARDTALMALLYGAGLRIHEALGLNIGD 177

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           +  + + L ++GKG + RIVPLLP +R+ I  +    P         PLF G RG  LNP
Sbjct: 178 LPPEGAPLSVRGKGGRQRIVPLLPVLRREIASWLRHHP---APTPDAPLFLGARGARLNP 234

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           GV QR +R  RR  GLP   T H LRHSFATHLL+NG DLR+IQ +LGH  LSTTQ YT 
Sbjct: 235 GVVQRRLRDFRRLNGLPEHATPHALRHSFATHLLANGADLRAIQELLGHASLSTTQRYTA 294

Query: 301 VNSKNGGDWMMEIYDQTHPSIT 322
           V+     D +M ++   HP   
Sbjct: 295 VD----ADRLMAVWQAAHPRAK 312


>gi|325280456|ref|YP_004252998.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712]
 gi|324312265|gb|ADY32818.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712]
          Length = 307

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 160/314 (50%), Gaps = 15/314 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
              +++   L +E+ LS  ++++Y  D ++   + A    +K  + T   +SY  ++ ++
Sbjct: 5   DAIESYKTYLILEKSLSSNSVEAYLNDIKKLAKYCA----DKHHVTTPDAISYDHLKDYL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                  + +R+  R +S I+SF K+L        +    +   K    LP  L  ++  
Sbjct: 61  MFINEVGVTNRTQARCISSIRSFYKFLVFDGQLENNPTKLLEAPKIGRKLPNILTTEEID 120

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            ++++V ++     +     N AI+ +LY CGLR+SE +S+   NI   Q  ++I+GKG+
Sbjct: 121 AMLNSVEMYKPEAQR-----NKAIIEMLYSCGLRVSELISIKLSNINFRQGIVKIEGKGN 175

Query: 196 KIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R++PL  + ++ I +Y        ++    +  LF   RG  L+  +    I+ L   
Sbjct: 176 KERMIPLSKNAKQEIKQYMKVYRDYLEIEKGYEDVLFLNKRGTALSRVMVFNIIKHLATR 235

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+  + + HT RHSFA+HL+S G DLR++Q +LGH  + TT+IYT+++      ++ + 
Sbjct: 236 AGIKKNVSPHTFRHSFASHLVSGGADLRAVQDMLGHESILTTEIYTHLDD----HYLKDT 291

Query: 314 YDQTHPSITQKDKK 327
            ++ HP     +++
Sbjct: 292 INKFHPRSKGNEEE 305


>gi|116492850|ref|YP_804585.1| tyrosine recombinase XerD subunit [Pediococcus pentosaceus ATCC
           25745]
 gi|116103000|gb|ABJ68143.1| tyrosine recombinase XerD subunit [Pediococcus pentosaceus ATCC
           25745]
          Length = 295

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 148/305 (48%), Gaps = 15/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             ++L +L++ERGLS  T+ SY  + R    +L      K  I  I+++    I  ++ +
Sbjct: 5   INDYLHSLKVERGLSDNTIISYRQELRHLNDYLT-----KEKITDIKKIDRYAILDYLDE 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            +       S   ++S ++ F KYL          ++N+   K+++ LP  L   +   L
Sbjct: 60  LKKTGRARSSSIHTISSLRKFFKYLLIVDKIDVDPMVNIDPPKRAHHLPSVLTTAEVEKL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +        +  + +  R+  IL ++Y  GLR+SE ++L    +  +   +   GKG+K 
Sbjct: 120 L-----QVPNTNEPLGMRDRTILEVMYATGLRVSELITLNLNELHLEMGLIETIGKGNKK 174

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RI+P+     K +  Y +      L       +F    G PL      + ++   +  G+
Sbjct: 175 RIIPIGDVAIKWLNRYINGPRRILLGDKKYNEIFLNQHGHPLTRQGIWKNLKAQVKKAGI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + T HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT++  +     ++++YD+
Sbjct: 235 EKNITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITQQR----LVDVYDK 290

Query: 317 THPSI 321
            HP  
Sbjct: 291 YHPRA 295


>gi|188583991|ref|YP_001927436.1| tyrosine recombinase XerC [Methylobacterium populi BJ001]
 gi|179347489|gb|ACB82901.1| tyrosine recombinase XerC [Methylobacterium populi BJ001]
          Length = 367

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 125/323 (38%), Positives = 183/323 (56%), Gaps = 8/323 (2%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           +   L       L      W + L  ER ++  T+++YE D RQFL + A       TI 
Sbjct: 11  DAEALLPPGDAALRAAMLGWREALARERRMAANTVEAYERDLRQFLAYRAARFG-TPTIA 69

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            +  L   ++RAF++ RR + IG RSL R L+G++SF ++L++    + + +  +R+ K 
Sbjct: 70  GLIALKPRDLRAFMAARRAEGIGGRSLMRMLAGLRSFARFLEREGHGSVAALGAVRSPKV 129

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN- 180
              LPR L    AL +             W+ AR++A++ LLYG GLRISEAL L  ++ 
Sbjct: 130 ERRLPRPLPVPAALAMTAPGTRPDDSREPWVLARDAAVIALLYGSGLRISEALGLAARDA 189

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
            +     +R+ GKG K+R VP+LP+V +A+  Y  LCP  L  + + PLF G++G PL+P
Sbjct: 190 PVPGIDEVRVTGKGGKVRAVPVLPAVAEAVAAYLSLCPHPL--DPEGPLFVGVKGGPLSP 247

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            V Q  +  LR  LGLP S T H LRHSFATHLL+  G+LR+IQ +LGH  LSTTQIYT 
Sbjct: 248 RVVQYAVAALRGALGLPESATPHALRHSFATHLLARQGELRAIQELLGHASLSTTQIYTK 307

Query: 301 VNSKNGGDWMMEIYDQTHPSITQ 323
           V++      +M  ++  HP   +
Sbjct: 308 VDAAR----LMSAFEDAHPRARR 326


>gi|284048585|ref|YP_003398924.1| tyrosine recombinase XerC [Acidaminococcus fermentans DSM 20731]
 gi|283952806|gb|ADB47609.1| tyrosine recombinase XerC [Acidaminococcus fermentans DSM 20731]
          Length = 311

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 97/310 (31%), Positives = 158/310 (50%), Gaps = 17/310 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  +++   LE+E+  S LT+++Y  D R F  F+A  TE+        Q++  +IR+++
Sbjct: 15  KWPEDFALYLEVEKDDSPLTIENYLADIRHFKEFMAQRTEDFR----WPQVTVLDIRSYL 70

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++   + +  R++ R +S ++SF +YL++      +    +R  K    LP  L E +  
Sbjct: 71  AQMHDRDLSRRTIARRISSLRSFYRYLRREGRVKTNPFTRVRTPKLEKKLPVFLEEFEI- 129

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
               N+LL     T  +  R+ AIL  LY  G R+SE + LT   +        + GKG 
Sbjct: 130 ----NLLLRMPDCTTVLGRRDRAILEFLYSTGCRVSELVGLTLTRVDLGNRYAILLGKGR 185

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLR 251
           K R+VPL      A+ +Y       L    Q P    +F   RG+PL+    +R + +  
Sbjct: 186 KERLVPLGHPCVAAMEDYLRHSRGTLMEKYQAPRHQTVFVNSRGRPLSARSVRRILDKYV 245

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               L    + HT+RH+FATHLL +G DLR++Q +LGH  LSTTQIYT+V ++     + 
Sbjct: 246 EMTALQKHVSPHTIRHTFATHLLDHGADLRAVQELLGHVSLSTTQIYTHVTAER----LT 301

Query: 312 EIYDQTHPSI 321
            +Y++ HP  
Sbjct: 302 AVYEKHHPRA 311


>gi|110635731|ref|YP_675939.1| site-specific tyrosine recombinase XerC [Mesorhizobium sp. BNC1]
 gi|110286715|gb|ABG64774.1| tyrosine recombinase XerC subunit [Chelativorans sp. BNC1]
          Length = 313

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 137/312 (43%), Positives = 185/312 (59%), Gaps = 9/312 (2%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
              ELLK R  WL +L+ ER L+ LTL +YE DTRQFL FL  +      +  I  L   
Sbjct: 9   AKPELLKARAEWLSSLKEERRLAPLTLDAYERDTRQFLQFLTRHGGGAPGLCDIAALRPA 68

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++RAF++ RR    G R+L R L+G++SFL++L+KR +   +    +R  +    LP+ L
Sbjct: 69  DLRAFLAARRIDGAGARTLGRGLAGVRSFLRFLEKRGLANAAGAGALRAPRAPKGLPKPL 128

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTL 188
               A  +          E  WI ARN+A+  LLYG GLRI EAL L   +I      +L
Sbjct: 129 TAADAKRVTSGE--GQLAEEPWIAARNAAVFALLYGSGLRIGEALGLKGVDIAALRSGSL 186

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R+ GKG K R+VP+LP V +A+ EY  LCP+ L    + PLFRG RG  L P + QR ++
Sbjct: 187 RVTGKGSKTRVVPVLPVVGEAVAEYQRLCPYHLEA--EAPLFRGARGGALQPAIIQREMQ 244

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           ++R  L LP + T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ+YT V++     
Sbjct: 245 KMRSALNLPDTATPHALRHSFATHLLGRGGDLRAIQELLGHASLSTTQVYTAVDTSR--- 301

Query: 309 WMMEIYDQTHPS 320
            ++EIY+  HP 
Sbjct: 302 -LLEIYENAHPR 312


>gi|296454370|ref|YP_003661513.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183801|gb|ADH00683.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 308

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 86/310 (27%), Positives = 144/310 (46%), Gaps = 17/310 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L ++ +ERGL+  T+ +YE D  +++ +L     E   I     ++  ++  +I+  
Sbjct: 10  EQFLIHIGVERGLATATVTAYESDIAKYIDWL-----ETRGIHEPDAITKQDVEDYIAAL 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  RS  R L+ I  F ++   +   T      ++  K +++LP  L   +   L+
Sbjct: 65  DQAGESARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLL 124

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D         T  +  R+ A+L  +Y  G R+SEA      +I  D+   R+ GKG K R
Sbjct: 125 DT--AAVGGSTDPVVLRDKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQR 182

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL------PLFRGIRGKPLNPGVFQRYIRQLRR 252
           +VPL     +AI  Y +    +L             LF   RGK ++       ++    
Sbjct: 183 LVPLGSYACRAITAYLNAGRGELERRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGE 242

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+      HTLRHSFATHL+  G D+R++Q +LGH  ++TTQIYT+V+ +     ++E
Sbjct: 243 RAGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPET----LIE 298

Query: 313 IYDQTHPSIT 322
            Y   HP   
Sbjct: 299 TYLTAHPRAR 308


>gi|226227913|ref|YP_002762019.1| tyrosine recombinase XerC [Gemmatimonas aurantiaca T-27]
 gi|226091104|dbj|BAH39549.1| tyrosine recombinase XerC [Gemmatimonas aurantiaca T-27]
          Length = 324

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 97/324 (29%), Positives = 157/324 (48%), Gaps = 16/324 (4%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P      L  E   +L +LE ER LS  TLQ+Y  D R+F  +LA      I      +L
Sbjct: 8   PAESETPLPVEIGEFLTHLEKERDLSPNTLQAYRRDLREFASWLAATHG--IAGWEWNEL 65

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           + T IR +++    + +  RS+ R LS ++SF +++ + +    +    + + K   +LP
Sbjct: 66  TRTNIRGYMAHLTRRGLAKRSIARQLSAVRSFYRWMHRDERVDVNPARAVGSPKLPRTLP 125

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             L+  QA TL+ +         ++ D RN A+L L Y  GLR+SE   +   ++     
Sbjct: 126 AYLDRTQAETLMQHAATRA-QSLEFTDVRNLAMLELFYSSGLRLSELRGVDLADLDLVSQ 184

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN---------IQLPLFRGIRGKP 237
            ++++GKG K RIVPL    ++A+  Y       +             +  +F   RG  
Sbjct: 185 QVKVRGKGRKERIVPLGDHAQRALRNYLVKRDALIAQASGGAVGRRVARGAVFLSERGAR 244

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           ++    Q  +  L   +      T H+LRH+FATHL+  G DLR++Q +LGH  +STTQI
Sbjct: 245 ISARAVQHAMVTLMSAVSEGADLTTHSLRHTFATHLVDAGADLRAVQELLGHASISTTQI 304

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSI 321
           YT+ +     D + ++Y Q HP  
Sbjct: 305 YTHTS----VDRLKKVYRQAHPRA 324


>gi|327479757|gb|AEA83067.1| site-specific tyrosine recombinase XerD [Pseudomonas stutzeri DSM
           4166]
          Length = 298

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 92/304 (30%), Positives = 141/304 (46%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GL+  + ++Y  D   F  +L            +       I   ++ 
Sbjct: 9   IDRYLDALWLEKGLADNSREAYRNDLASFNGWLQERGVR------LAAAGREIILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R       RS  R LSG++ F +YL +    +    L +   +    LP+AL+E     L
Sbjct: 63  RLNNGYKARSTARFLSGLRGFYRYLLREGEISLDPTLRVDLPRLGRPLPKALSEADVEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +             +  R+ A+L +LY CGLR++E +SLT + +   Q  LR  GKG+K 
Sbjct: 123 L-----AAPDTGDPLGLRDRAMLEVLYACGLRVTELISLTLEQVSMRQGVLRTFGKGNKE 177

Query: 198 RIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       +  Y  D     L       LF   RG+ +    F   I+   R  G+
Sbjct: 178 RLVPLGEEALHWLQRYQRDARDQLLAGRPSDVLFPSQRGEQMTRQTFWHRIKLHARVAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR++Q +LGH  LSTTQIYT++        + E++  
Sbjct: 238 ATGISPHTLRHAFATHLLNHGADLRTVQMLLGHSDLSTTQIYTHI----ARARLQELHAT 293

Query: 317 THPS 320
            HP 
Sbjct: 294 HHPR 297


>gi|260892475|ref|YP_003238572.1| integrase family protein [Ammonifex degensii KC4]
 gi|260864616|gb|ACX51722.1| integrase family protein [Ammonifex degensii KC4]
          Length = 304

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 92/309 (29%), Positives = 146/309 (47%), Gaps = 14/309 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              ++ +L+ E+G S  TL  Y+ D  + L F A          + + ++ +  R F+  
Sbjct: 5   IDRFIIHLQTEKGASLRTLTEYQKDLLEGLSFFARLLGVAEAELSPQSITPSLFRRFLGY 64

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + +   ++ R L+  +SF ++L +  I     +  +   K+   LPR L   +A  L
Sbjct: 65  LHERSLSRNTIARKLAAWRSFFRFLCREGILNADPLKLVSAPKREKRLPRVLYPHEAEAL 124

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           V          T     R+ A+L +LYG GLR+SE   L   ++  ++  LR+ GKG K 
Sbjct: 125 V-----TAPKGTDPKAWRDRALLEVLYGAGLRVSEVEHLNLSDVDLERGELRVWGKGGKE 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL-----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           RI  L P    A+ +Y +     L         +  LF   RG+ L+    +  +     
Sbjct: 180 RIALLHPLAVAALKDYLERGRPLLLSRRSRGEEEPALFLNHRGERLSARGIRLIVTSYAA 239

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    T HT RHSFATHLL  G DLR++Q +LGH RL+TTQIYT ++ +     +  
Sbjct: 240 KTGVKGKVTPHTFRHSFATHLLDGGADLRTVQELLGHKRLATTQIYTRLSLER----IKH 295

Query: 313 IYDQTHPSI 321
           IY++THP  
Sbjct: 296 IYEKTHPRA 304


>gi|89895059|ref|YP_518546.1| hypothetical protein DSY2313 [Desulfitobacterium hafniense Y51]
 gi|89334507|dbj|BAE84102.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 322

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 92/326 (28%), Positives = 150/326 (46%), Gaps = 29/326 (8%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
              + +L  L +ERGLS  T  SYE D R+F  FL    +  I  +        ++  F+
Sbjct: 7   AWLKKYLSYLNVERGLSPNTRNSYERDLRKFTAFLQQRGKNIIACEG------NDLFLFL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            + + Q    R+L R L+ ++ F  +L   ++  +     +   K    LP  L+E    
Sbjct: 61  LQEKNQGRSARTLARYLATLRGFFAFLLGEEMREDDPTEYLSTPKLEQHLPHVLSEGSIS 120

Query: 136 TLV------------------DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
            L+                        +  + K +  RN A++ +LYGCGLR+SE + L 
Sbjct: 121 KLMGEGGDRDKEGPKPGKSSKKAGDSDSEGKDKGLLMRNMAMIEVLYGCGLRVSELVGLK 180

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGK 236
             +I+ +  TLR +GKG K RIVP+     + +  Y           +    LF   RG 
Sbjct: 181 VSDIIFETRTLRCRGKGSKERIVPIGEYALEVLQNYLEHDRERLRGKHKTEVLFLNSRGT 240

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L        +++  +  G+  +   H  RHSFATHLL +G DLRS+Q +LGH  ++TTQ
Sbjct: 241 ALTRQGIWDILKKWAQTHGVQENIYPHKFRHSFATHLLDHGADLRSVQEMLGHADIATTQ 300

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSIT 322
           IYT+++ +     ++E++ + HP   
Sbjct: 301 IYTHLSRQR----LLEVFRKAHPRAD 322


>gi|23465930|ref|NP_696533.1| integrase/recombinase [Bifidobacterium longum NCC2705]
 gi|34222807|sp|Q7ZAP1|XERD_BIFLO RecName: Full=Tyrosine recombinase xerD
 gi|23326639|gb|AAN25169.1| probable integrase/recombinase [Bifidobacterium longum NCC2705]
          Length = 308

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 86/310 (27%), Positives = 145/310 (46%), Gaps = 17/310 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L ++ +ERGL+  T+ +YE D  +++ +L     E   I     ++  ++  +I+  
Sbjct: 10  EQFLIHIGVERGLATATVTAYESDIAKYIDWL-----ETRGIHEPDAITKQDVEDYIAAL 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  RS  R L+ I  F ++   +   T      ++  K +++LP  L   +   L+
Sbjct: 65  DQAGESARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLL 124

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D         T  +  R+ A+L  +Y  G R+SEA      +I  D+   R+ GKG K R
Sbjct: 125 DA--AAVGGSTDPVVLRDKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQR 182

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL------PLFRGIRGKPLNPGVFQRYIRQLRR 252
           +VPL     +AI  Y +    +L             LF   RGK ++       ++    
Sbjct: 183 LVPLGSYACRAITAYLNAGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGE 242

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+      HTLRHSFATHL+  G D+R++Q +LGH  ++TTQIYT+V+ +     ++E
Sbjct: 243 RAGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPET----LIE 298

Query: 313 IYDQTHPSIT 322
            Y  +HP   
Sbjct: 299 TYLTSHPRAR 308


>gi|332994945|gb|AEF05000.1| tyrosine recombinase [Alteromonas sp. SN2]
          Length = 307

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 88/316 (27%), Positives = 157/316 (49%), Gaps = 14/316 (4%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++S       + +L +L++ERGLS LT+ +Y        I L  Y            ++ 
Sbjct: 6   VLSEPCHLWLEKFLLHLQVERGLSPLTISNYRRQLTSIAITLGLYE--------WSGMTP 57

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           ++++  ++  +      RS+   LS +++F +YL   +    + +  ++  K+   LP+ 
Sbjct: 58  SDVKRVMAAAKMDGHKPRSIALRLSALRTFCQYLIDNEQLFSNPVEGIQAPKQGKPLPKQ 117

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+  +   L+ N    +    + I  R+ A+  LLYGCGLR+SE   L   +   D  T+
Sbjct: 118 LSVDEMQQLLANEQAASGDTDEGIICRDVAMFELLYGCGLRLSELTGLNLSDYPKD-GTI 176

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           ++ GKG K RI+PL    +KA+  +  + P       +  +F   R   ++       + 
Sbjct: 177 KVTGKGSKQRILPLGRQAQKALHAWLKVRP-AYASPYEPAIFVSKRKTRISNRQVANRLN 235

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           Q+     L    + H LRHSFATH+L + GDLR++Q +LGH  LSTTQ+YT+++ ++   
Sbjct: 236 QMAELQSLSQKVSPHKLRHSFATHVLESSGDLRAVQELLGHANLSTTQVYTHLDFQH--- 292

Query: 309 WMMEIYDQTHPSITQK 324
            + ++YD  HP   +K
Sbjct: 293 -LAKVYDAAHPRAHKK 307


>gi|310821627|ref|YP_003953985.1| Tyrosine recombinase XerD [Stigmatella aurantiaca DW4/3-1]
 gi|309394699|gb|ADO72158.1| Tyrosine recombinase XerD [Stigmatella aurantiaca DW4/3-1]
          Length = 310

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 83/306 (27%), Positives = 138/306 (45%), Gaps = 15/306 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              ++  +  ERGLS  T+ +Y  D   +   L         +  + ++   ++ A + +
Sbjct: 5   LDTFIAFIRAERGLSGKTVDAYAADLTVYFEDLRAR-----GVLDVARVKQEDVTAHLMQ 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + +  RS  R L+ ++ F ++L   K   +    ++   + +  LP  L  ++   L
Sbjct: 60  LGARGLSKRSQARHLAAVRGFHRFLIAEKHAEKDPTEDLDTPRSARKLPSFLTLEEVEQL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +         E      R+ A+L LLY  GLR+SE  SL   ++      L  +GKG K 
Sbjct: 120 L-----AAPDERHPTGMRDKAMLELLYATGLRVSELCSLGINDVQLGAGYLVAKGKGSKE 174

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+     + +  Y        L       LF   RG       F + +++     G+
Sbjct: 175 RVVPVGSVAVEKVQAYLGGPRQHLLGKRQSRSLFITPRGGAFTRQGFWKLLKRYALKAGI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRHSFATHL+  G DLR++Q++LGH  L+TTQIYT+VNS      +  +YD+
Sbjct: 235 RKPISPHKLRHSFATHLVERGADLRAVQAMLGHADLATTQIYTHVNSAR----LRAVYDE 290

Query: 317 THPSIT 322
            HP   
Sbjct: 291 HHPRSE 296


>gi|258625073|ref|ZP_05719992.1| tyrosine recombinase XerC [Vibrio mimicus VM603]
 gi|258582624|gb|EEW07454.1| tyrosine recombinase XerC [Vibrio mimicus VM603]
          Length = 310

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 82/327 (25%), Positives = 160/327 (48%), Gaps = 17/327 (5%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+   L   +   L +  + +   L  E+GLS  T ++Y+        +LA     ++ +
Sbjct: 1   MKTEEL-TPLPNALAQSLERFYAYLHSEKGLSLYTQRNYKQQLETMARYLA-----QMGL 54

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            +  QL    +R  +   + Q +   S+   LS ++SFL +L  R     +    +   +
Sbjct: 55  TSWPQLDAAWVRQLVVLGKRQGMKASSISTRLSSLRSFLDFLILRGELQANPAKGVSAPR 114

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K   LP+ L+  +   L++        +   +  R+ AI+ L+YG GLR++E +S+  ++
Sbjct: 115 KQRPLPKNLDVDEMAQLLEVT------DDDPLSIRDRAIMELMYGSGLRLAELVSIDVKD 168

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           +      +R+ GKG+K R V      ++ + ++  L     N + +  LF    G  ++ 
Sbjct: 169 VNLRDGEIRVIGKGNKERKVWFAGQAQEWVGKWLKLRSQLANSD-ETALFVSKLGTRISH 227

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              Q+ + +  +   +    + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+
Sbjct: 228 RSVQKRMAEWGQKQAVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH 287

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKDKK 327
           ++ ++    + ++YDQ HP   +K+K 
Sbjct: 288 LDFQH----LAQVYDQAHPRARKKNKD 310


>gi|227813261|ref|YP_002813270.1| tyrosine recombinase XerC [Bacillus anthracis str. CDC 684]
 gi|227007518|gb|ACP17261.1| tyrosine recombinase XerC [Bacillus anthracis str. CDC 684]
          Length = 299

 Score =  261 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 87/309 (28%), Positives = 152/309 (49%), Gaps = 17/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R ++
Sbjct: 5   KLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDITYADVRLYL 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +K+  +S+ R +S ++S  ++L +     ++        KK  S+P+        
Sbjct: 60  TTLHDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKF-----LY 114

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
                 L   S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GKG 
Sbjct: 115 AEELEELFEASDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGK 174

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K R +P     + A++ Y +     L    +     +F   +G PL     +  + +L +
Sbjct: 175 KQRYIPFGSYAQDALITYIENGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIK 234

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +     +  
Sbjct: 235 KASLTMRISPHILRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER----LRS 290

Query: 313 IYDQTHPSI 321
           +Y + HP  
Sbjct: 291 VYMKHHPRA 299


>gi|289209264|ref|YP_003461330.1| tyrosine recombinase XerD [Thioalkalivibrio sp. K90mix]
 gi|288944895|gb|ADC72594.1| tyrosine recombinase XerD [Thioalkalivibrio sp. K90mix]
          Length = 301

 Score =  261 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 140/305 (45%), Gaps = 17/305 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L    GLS  TL +Y  D      +L            +   S  ++ AF+S 
Sbjct: 11  LDRFLDELWAVEGLSDHTLAAYRRDLEALARWLHGRG------VALEAASSADLLAFVSA 64

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R       +S+ R+LS I+ F +YL  +    +     + + +    LP +L+E Q   L
Sbjct: 65  RMQAGARPKSITRALSSIRRFYRYLVHQGEREDDPSAGIESPRAGRPLPDSLSETQVNAL 124

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +    LHT      +  R+ A+L L+Y  GLR+SE + L    +   Q  +RI GKGDK 
Sbjct: 125 LAAPELHTE-----VGLRDRAMLELMYATGLRVSELVGLEQSEVNSRQGVVRITGKGDKE 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R+VPL       +  Y       L         +F   RG+ L    F   I+   +  G
Sbjct: 180 RLVPLGEEAAHWLARYLREARGALMSGHPPVDTVFVTRRGRGLTRQAFWYRIKHYAQVAG 239

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           + +  + HTLRH+FATHLL +G DLR +Q +LGH  LSTTQIYT+V        +  ++ 
Sbjct: 240 IEVPLSPHTLRHAFATHLLDHGADLRVVQMLLGHSSLSTTQIYTHV----ARARLQSLHA 295

Query: 316 QTHPS 320
           + HP 
Sbjct: 296 EHHPR 300


>gi|152979420|ref|YP_001345049.1| site-specific tyrosine recombinase XerD [Actinobacillus
           succinogenes 130Z]
 gi|150841143|gb|ABR75114.1| tyrosine recombinase XerD [Actinobacillus succinogenes 130Z]
          Length = 297

 Score =  261 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L ++ +E+GLS+ T+QSY  D      +L  ++   I+      L   ++++F+ +
Sbjct: 7   VELFLNDIWLEKGLSENTIQSYRLDLAALCDWLNAHSLSLIS------LDAVDLQSFLGQ 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R LS ++   +YL +     +     + + K    LP+ L E+Q    
Sbjct: 61  RVEAGYKATSTARLLSAMRKLFQYLYRENYRPDDPSATLSSPKLPTRLPKYLTEQQV--- 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
             N LL        ++ R+ A+L LLY  GLR++E +SL+  NI   Q  +R+ GKG+K 
Sbjct: 118 --NDLLSVPSTDVPLELRDKAMLELLYATGLRVTELVSLSMDNISLSQGVVRVIGKGNKE 175

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVP+       + E+        LN      +F   R   +    F   I+       +
Sbjct: 176 RIVPMGEEAAYWVGEFIRYGRAMLLNGQSSDVVFPSRRALQMTRQTFWHRIKYYAVLADI 235

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
              S + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  +++
Sbjct: 236 DGDSLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER----LKRLHE 291

Query: 316 QTHPS 320
           + HP 
Sbjct: 292 KFHPR 296


>gi|193215186|ref|YP_001996385.1| tyrosine recombinase XerD [Chloroherpeton thalassium ATCC 35110]
 gi|193088663|gb|ACF13938.1| tyrosine recombinase XerD [Chloroherpeton thalassium ATCC 35110]
          Length = 305

 Score =  261 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 96/304 (31%), Positives = 153/304 (50%), Gaps = 12/304 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L +ER LS+ T  SY  D  ++L+++    E       + ++   ++R FI++
Sbjct: 12  LREFLNYLRLERNLSENTKASYAHDLTRYLLYVQDSHE------NLDEVRAEDVRKFITE 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +   S+ R++S I+S  K+L   K   ++    +   K    LP  LN+++   L
Sbjct: 66  LHDLGLEASSISRNISAIRSLHKFLSAEKKIRKNVAEEVILPKLGKYLPTVLNQQEVDKL 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++  L H  +    +  R+ AIL  LY  G+R+SE + L  QN+  D    RI GKG K 
Sbjct: 126 LEMPL-HPENPKPKLAIRDKAILEFLYATGVRVSELVELKQQNLFFDSGFARIFGKGAKE 184

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  S   A+  Y   +    +N      LF   RGK L        +++  +  G+
Sbjct: 185 RLVPVGSSAIHAVETYQKTIRIKLVNRASADFLFLNARGKKLTRMSIYNIVQEYAQQAGI 244

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S + HTLRHSFATHLL  G DLRS+Q +LGH  +  TQIYT+V+      ++ E++  
Sbjct: 245 EKSISPHTLRHSFATHLLEGGADLRSVQEMLGHSSIKATQIYTHVD----RAFIKEVHKS 300

Query: 317 THPS 320
            HP 
Sbjct: 301 FHPR 304


>gi|158425627|ref|YP_001526919.1| putative site-specific recombinase [Azorhizobium caulinodans ORS
           571]
 gi|158332516|dbj|BAF90001.1| putative site-specific recombinase [Azorhizobium caulinodans ORS
           571]
          Length = 327

 Score =  261 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 117/313 (37%), Positives = 177/313 (56%), Gaps = 8/313 (2%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           + +L    + WL  L  ER LS  T  +Y  D    L  L  +   + T+  +  L+  +
Sbjct: 21  APDLQPAVEGWLARLAHERRLSPKTQDAYARDLTVVLNLLTLHLGHRPTVADMAALAPAD 80

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +RA ++ RR + +  R+L R ++  +SF ++L++  +     +  +R  K   SLP+ ++
Sbjct: 81  VRAVLAARRMEGVAPRTLVRLMAAARSFGRHLEREGLGKVGALAAVRAPKVPRSLPKPVS 140

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTL 188
              A  L D           W+ AR++A++ LLYGCGLRISEAL LT   + +      +
Sbjct: 141 VSDAKALADPATRAGEDRAPWVLARDAAVIALLYGCGLRISEALGLTRSMMPEPGGGDQI 200

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG+K R+VPLLP V +A+ +Y  LCP+ L  +   PLFRG +G PL+  + Q  + 
Sbjct: 201 TVTGKGNKTRMVPLLPQVTQAVADYAALCPYVLEPDK--PLFRGAKGGPLSARIVQMAVE 258

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           ++R  LGLP S T H LRHSFATHLL+ GG+LR+IQ +LGH  LSTTQ+YT V++     
Sbjct: 259 RMRGALGLPDSATPHALRHSFATHLLARGGELRAIQELLGHASLSTTQVYTAVDATR--- 315

Query: 309 WMMEIYDQTHPSI 321
            +M+ Y   HP  
Sbjct: 316 -LMDAYRAAHPRA 327


>gi|118592100|ref|ZP_01549494.1| probable site-specific integrase/recombinase [Stappia aggregata IAM
           12614]
 gi|118435396|gb|EAV42043.1| probable site-specific integrase/recombinase [Stappia aggregata IAM
           12614]
          Length = 307

 Score =  261 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 93/314 (29%), Positives = 145/314 (46%), Gaps = 19/314 (6%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           + +N+L+ L  ERG ++ TL  Y  D   F  FL          +++      +I A++ 
Sbjct: 6   DLENFLEMLAAERGAAENTLAGYRRDLEDFSGFLGR--------KSLASAQSEDISAYLG 57

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               +   + S  R LS +K F K+L       +     +   KK  SLP+ L+ +    
Sbjct: 58  DLNRRGFAETSQARRLSALKQFYKFLYAEGTREDDPTRTLSAPKKRASLPKVLSIEDVDR 117

Query: 137 LVDNVLLHTSHETKWIDARNSA-----ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           L++     T    K   AR  A     ++ +LY  GLR+SE ++L     + D   + I+
Sbjct: 118 LIETARAETERPRKSATARLRAQRMYTLIEVLYATGLRVSELVALPVTAALRDARLIEIK 177

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQL 250
           GKG K R+VPL  + + A+ +Y  L   +        LF        L    F R ++ L
Sbjct: 178 GKGGKERLVPLSRAAQAAMKDYVGLRAAEGAYEKSPWLFPSHGDSGHLTRQHFARELKDL 237

Query: 251 RRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
               GL     + H LRH+FA+HLL NG DLR +Q +LGH  +STTQIYT+V  +     
Sbjct: 238 AVAAGLDAGKISPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDER---- 293

Query: 310 MMEIYDQTHPSITQ 323
           + E+ +  HP   +
Sbjct: 294 LRELVESAHPLAKK 307


>gi|114769433|ref|ZP_01447059.1| tyrosine recombinase [alpha proteobacterium HTCC2255]
 gi|114550350|gb|EAU53231.1| tyrosine recombinase [alpha proteobacterium HTCC2255]
          Length = 305

 Score =  261 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 121/303 (39%), Positives = 181/303 (59%), Gaps = 9/303 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +NWL +L    G ++ T+ +Y  D   F+ FL+ +  +  +   + ++S  ++R++IS  
Sbjct: 12  ENWLSSLSAVGGRAEKTIDAYRHDVSHFIHFLSQHNGKMPSKAILSKVSVKDMRSWISHA 71

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R   +  RSL R+LS IKSF +++ +    + + +L+ R  K    LPR + +  A  L+
Sbjct: 72  RRSGLSPRSLARALSAIKSFYRWMGQTYGVSTTAVLSTRTPKFEKPLPRPVKKSDAKDLI 131

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             + L + HE  WI+ARN A++ LLYGCGLRISEALS+T  +       L+I GKG+K R
Sbjct: 132 KQIDLQSEHE--WINARNVAVITLLYGCGLRISEALSITF-DKTPLPEVLKIIGKGNKER 188

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVP+LP  + A+  Y   CP+    N +  LF+G RG PLN  + ++ + Q R  LGLP 
Sbjct: 189 IVPILPVAKAAVKNYLKCCPYSFLPNDR--LFKGARGGPLNQRLIRKVMEQTRIQLGLPS 246

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + T H++RHSFATHLL  GGDLR IQ +LGH  LS+TQ YT V+       +M++Y + H
Sbjct: 247 TATPHSMRHSFATHLLEAGGDLRVIQELLGHASLSSTQAYTAVDQTR----LMDVYKKAH 302

Query: 319 PSI 321
           P  
Sbjct: 303 PKA 305


>gi|108758883|ref|YP_632026.1| tyrosine recombinase XerD [Myxococcus xanthus DK 1622]
 gi|108462763|gb|ABF87948.1| tyrosine recombinase XerD [Myxococcus xanthus DK 1622]
          Length = 310

 Score =  261 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 138/304 (45%), Gaps = 15/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              ++  +  ERGLS  T+ +Y  D   +   L         +  + Q    ++ A +S 
Sbjct: 5   LDAFIAFIRAERGLSGKTVDAYAADINVYFEDLRSR-----GVSDVTQARQEDVSAHLSA 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + +G RS  R L+ ++ F ++L   ++  +    ++   + +  LP  L  ++   L
Sbjct: 60  LGKRGLGKRSQARHLAALRGFHRFLVAERMADKDPTEDLDTPRSARKLPSFLTLEEVEQL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +         E      R+ A+L +LY  GLR+SE   L   ++      L  +GKG K 
Sbjct: 120 L-----AAPDERTSTGVRDKAMLEVLYATGLRVSELCGLGINDVQLTAGYLVAKGKGAKE 174

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL     + +  Y     P  L       LF   RG       F + +++     G+
Sbjct: 175 RLVPLGSVAIEKVQAYLAESRPAVLGRRKSQALFVTPRGSGFTRQGFWKLLKRYALKAGI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRHSFATHL+  G DLR++Q +LGH  L+TTQIYT+VN+      +  +YD+
Sbjct: 235 LKPLSPHKLRHSFATHLVERGADLRAVQQMLGHADLATTQIYTHVNAAR----LRSVYDE 290

Query: 317 THPS 320
            HP 
Sbjct: 291 FHPR 294


>gi|148210|gb|AAA67607.1| unknown [Escherichia coli str. K-12 substr. MG1655]
          Length = 298

 Score =  261 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 88/311 (28%), Positives = 150/311 (48%), Gaps = 17/311 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + + +L+ L +ER LS +TL +Y+      + F +     +  +Q+ +Q   T +R
Sbjct: 3   DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFAS-----ENGLQSWQQCDVTMVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++  
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D  +         +  R+ A+L ++YG GLR+SE + L  +++  +   + + G
Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+       I  + DL   DL  +    LF    GK  +    Q+   +   
Sbjct: 172 KGSKERRLPIGRKPVAWIEHWLDLR--DLFGSEDDALFLSKLGKRXSARNVQKRFAEWGI 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H L HSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 230 KQGLNNHVHPHKLXHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285

Query: 313 IYDQTHPSITQ 323
           +YD  HP   +
Sbjct: 286 VYDAAHPRAKR 296


>gi|241896013|ref|ZP_04783309.1| integrase/recombinase [Weissella paramesenteroides ATCC 33313]
 gi|241870744|gb|EER74495.1| integrase/recombinase [Weissella paramesenteroides ATCC 33313]
          Length = 308

 Score =  261 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 99/314 (31%), Positives = 160/314 (50%), Gaps = 13/314 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E  + +Q +L  L IER  S  T ++YE D  +FL FL+     K  +  +  ++  ++R
Sbjct: 5   EAERAKQLFLDYLRIERQYSLETQKAYEGDIAEFLTFLSGTQATKSIV--LSNITSFDVR 62

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F+S+   +  G R++ R +S ++SF ++L   ++  E+  + +   K    LPR   +K
Sbjct: 63  VFLSELYEKGDGSRTIARKVSSLRSFYRFLINNEMVAENPFVGIVLKKPGQHLPRYFYQK 122

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   + D V+   S     +  RN  +L +LYG G R+SE  ++T QN+      + I G
Sbjct: 123 ELTKMFDVVMTDQS----ALGLRNHLLLEMLYGTGARVSEIANMTLQNVDSHARVVTITG 178

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLN---LNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           KG+K RIVP       A+ +Y       L     +    LF   RG P+     +  ++Q
Sbjct: 179 KGNKTRIVPFGRYAADALAKYLKTGRPVLASKQADTSNKLFLNQRGAPVTTAGIEYILKQ 238

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           + +  GL    TAH  RH+FAT LL+N  DLR++Q +LGH  LSTTQIYT+V +    D 
Sbjct: 239 IGKKSGLTQEVTAHMFRHTFATDLLNNQADLRTVQQLLGHSSLSTTQIYTHVTT----DA 294

Query: 310 MMEIYDQTHPSITQ 323
           + + Y    P  ++
Sbjct: 295 LQKSYRNFFPRASE 308


>gi|226306747|ref|YP_002766707.1| tyrosine recombinase XerD [Rhodococcus erythropolis PR4]
 gi|226185864|dbj|BAH33968.1| tyrosine recombinase XerD [Rhodococcus erythropolis PR4]
          Length = 307

 Score =  261 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 86/316 (27%), Positives = 144/316 (45%), Gaps = 17/316 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L ++  ++L +L +ERG ++ TL SY  D  ++  +L     +   I  +  ++  ++  
Sbjct: 2   LARQVDSYLDHLAVERGSARNTLLSYRRDLNRYAEYL-----DGRGIDDVAGVTENDVTE 56

Query: 74  FISKRRTQK-------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           F++  R          +   S  R+L  ++ F K+     +        ++       LP
Sbjct: 57  FVTHLRLGDKDAGVLPLAASSAARTLIAVRGFHKFSAAEGLVGVDVARTVKPPTPGRKLP 116

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           +AL     + L+ +     +      D R+ A+L LLY  G RI+EA+ L   +I  +  
Sbjct: 117 KALPLDDVIALL-DASGGGAAGDGPRDLRDRALLELLYSTGARITEAIDLDVDDIDTETR 175

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           ++ ++GKG K RIVP+      A+  Y       L       LF   RG  L+     + 
Sbjct: 176 SVLLKGKGGKQRIVPVGRPAIAAVDAYLVRGRPSLATRGVPALFLNARGGRLSRQSAWQI 235

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           ++      G+    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V     
Sbjct: 236 LQDAAASAGIKADVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVT---- 291

Query: 307 GDWMMEIYDQTHPSIT 322
              + E++ Q HP   
Sbjct: 292 VTALREVWAQAHPRAR 307


>gi|254563619|ref|YP_003070714.1| ptyrosine recombinase xerC, integrase/recombinase Ripx
           [Methylobacterium extorquens DM4]
 gi|254270897|emb|CAX26902.1| ptyrosine recombinase xerC, integrase/recombinase Ripx (xerC)
           [Methylobacterium extorquens DM4]
          Length = 365

 Score =  261 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 127/314 (40%), Positives = 184/314 (58%), Gaps = 8/314 (2%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
              L    + W + L  ER ++  T+++YE D RQFLI  A  +    TI  +  L   +
Sbjct: 20  DAALRAAMRGWREALARERRMAANTVEAYERDLRQFLIHRAARSG-TPTIAGLIALKPRD 78

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +RAF++ RR + IG RSL R L+G++SF ++L++    + + +  +R+ K    LPR L 
Sbjct: 79  LRAFMAARRAEGIGGRSLMRMLAGLRSFARFLEREGHGSVAALGAVRSPKVERRLPRPLP 138

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLR 189
              AL +             W+ AR++A++ LLYG GLRISEAL LT ++  M     +R
Sbjct: 139 ISAALAMTAPETRPDDDRAPWVLARDAAVIALLYGSGLRISEALGLTARDAPMPGIDEVR 198

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG K+R VP+LP+V +A+  Y  LCP  L  + + PLF G++G PL+P V Q  +  
Sbjct: 199 VTGKGGKVRAVPVLPAVAEAVAAYLSLCPHPL--DPEGPLFVGVKGGPLSPRVVQYAVSA 256

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           LR  LGLP S T H LRHSFATHLL+  G+LR+IQ +LGH  LSTTQIYT V++      
Sbjct: 257 LRGALGLPESATPHALRHSFATHLLARRGELRAIQELLGHASLSTTQIYTKVDAAR---- 312

Query: 310 MMEIYDQTHPSITQ 323
           +M  ++  HP   +
Sbjct: 313 LMSAFEDAHPRARR 326


>gi|292491052|ref|YP_003526491.1| tyrosine recombinase XerD [Nitrosococcus halophilus Nc4]
 gi|291579647|gb|ADE14104.1| tyrosine recombinase XerD [Nitrosococcus halophilus Nc4]
          Length = 306

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 92/306 (30%), Positives = 152/306 (49%), Gaps = 16/306 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           ++ + +L  L +E GL++ TL +Y  D   F  +L          +T+ +    ++ A++
Sbjct: 15  RQLEYFLDALWLEEGLAENTLAAYRRDLEGFSRWLYPQG------RTLVEAQREDLLAYL 68

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           + R  +    RS  RS+S ++ F +YL + K+        +   +    LP +L+E++  
Sbjct: 69  AHRLERSHKARSAARSVSSLRRFYRYLVREKVRDSDPSDRVEAPRLGRPLPESLSEEEVE 128

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L     L        +  R+ A+L  LY  GLR+SE + LT   +   Q  +R+ GKG+
Sbjct: 129 AL-----LAAPEVNCNLGLRDRAMLETLYATGLRVSELVHLTLPQLNLRQGVVRLSGKGN 183

Query: 196 KIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K R+VPL       +  Y  +  P  +   +   LF   RG  +    F   I++  R  
Sbjct: 184 KERLVPLGEVALSWLECYSREARPGLIKAQMSEILFLTRRGGAMTRQAFWYLIKRYARQA 243

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+  + + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + +++
Sbjct: 244 GVRKALSPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHV----ARARLQQLH 299

Query: 315 DQTHPS 320
            Q HP 
Sbjct: 300 QQHHPR 305


>gi|291484165|dbj|BAI85240.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           natto BEST195]
          Length = 304

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 155/308 (50%), Gaps = 17/308 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +++ L+IE+  S+ T+ +Y     +F  FL         I    + +Y + R F+++   
Sbjct: 11  FVEYLQIEKNNSQYTIVNYVDSIEEFETFLRVQ-----GINGFEEAAYQDTRIFLTEAYE 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  R++ + +S ++SF K+L + K+  E+    +   K+   +P+ L +K+   L + 
Sbjct: 66  KGLSRRTISKKISALRSFYKFLMREKLIEENPFQLVHLPKQEKRIPKFLYQKELEELFE- 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                S  ++    R+ A+L LLY  G+R+SE  S+T  ++     T+ + GKG K R +
Sbjct: 125 ----VSDISQPAGMRDQALLELLYATGMRVSECCSITINDVDLFMDTVLVHGKGKKQRYI 180

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           P     R+A+  Y +     L +  + P   LF   RG PL     +  +  L +     
Sbjct: 181 PFGSYAREALKVYMNSGRQCLLMKAKEPHDLLFVNQRGGPLTARGIRHILSGLVQKASST 240

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           L    H LRH+FATHLL+ G DLRS+Q +LGH  LS+TQIYT+V+ +     +   Y   
Sbjct: 241 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKE----MLRNTYMSH 296

Query: 318 HPSITQKD 325
           HP   +K+
Sbjct: 297 HPRAFKKN 304


>gi|260913748|ref|ZP_05920224.1| tyrosine recombinase XerD [Pasteurella dagmatis ATCC 43325]
 gi|260632287|gb|EEX50462.1| tyrosine recombinase XerD [Pasteurella dagmatis ATCC 43325]
          Length = 301

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 98/305 (32%), Positives = 158/305 (51%), Gaps = 13/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L ++ IER LS+ T+QSY  D    L +L   +EE+    T+  L   +++ F+ +
Sbjct: 7   IELFLNDVWIERKLSQNTVQSYRLDLTALLQWLEKQSEEQ--PLTLITLDAIDLQTFLGE 64

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R TQ     S  R LS I+   +YL + K  T+     + + K  + LP+ L E+Q   L
Sbjct: 65  RLTQGYKATSTARLLSAIRKLFQYLYREKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDL 124

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +     +       ++ R+ A++ LLY  GLR++E +SLT +NI  +Q  +R+ GKG+K 
Sbjct: 125 L-----NAPDVDVPLELRDKAMMELLYATGLRVTELVSLTVENININQGIVRVIGKGNKE 179

Query: 198 RIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVP+       I ++        LN      LF   R   +    F   I+       +
Sbjct: 180 RIVPIGEEATYWIRQFVLYGRTTLLNGQSSDVLFPSKRAVQMTRQTFWHRIKHYALISEI 239

Query: 257 PLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            L+  + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  +++
Sbjct: 240 DLNSLSPHVLRHAFATHLINHGADLRVVQMLLGHSDLSTTQIYTHVAKER----LKHLHE 295

Query: 316 QTHPS 320
           + HP 
Sbjct: 296 RYHPR 300


>gi|312884205|ref|ZP_07743916.1| site-specific tyrosine recombinase XerC [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368133|gb|EFP95674.1| site-specific tyrosine recombinase XerC [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 310

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 83/320 (25%), Positives = 152/320 (47%), Gaps = 16/320 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
            +   L     N+ + L  E+GLS  T ++Y+         L      ++ I+    +  
Sbjct: 7   PLPSRLQDPLVNFYEYLRAEKGLSLHTQRNYKQQLETMAFQLV-----QLGIEDWSSVDA 61

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R   SK     +   SL   LS +++F  +L  R     +    +   +K   LP+ 
Sbjct: 62  AWVRQLASKGMRDGMKASSLATRLSSLRAFFDFLILRGEIAANPAKGVSAPRKKRPLPKN 121

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+  +   L++        E   +  R+ AI+ L+YG GLR++E +++  ++I   +  L
Sbjct: 122 LDVDEVNQLLEV------DEDDPLAVRDRAIMELMYGAGLRLAELVNVDLKDIRTSRGEL 175

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R+ GKG+K R VP        + ++  +     + N +  LF    G  ++    Q+ + 
Sbjct: 176 RVVGKGEKERKVPFAGQAVIWVEKWLRVRGQLSDPN-ESALFVSKLGGRISHRSVQKRMA 234

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +  +   +    + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ ++   
Sbjct: 235 EWGQKQAVSSHISPHKLRHSFATHMLESSQNLRAVQELLGHENISTTQIYTHLDFQH--- 291

Query: 309 WMMEIYDQTHPSITQKDKKN 328
            + E+YDQ HP   +K +K 
Sbjct: 292 -LAEVYDQAHPRARKKGRKE 310


>gi|152981264|ref|YP_001354893.1| site specific integrase/recombinase protein [Janthinobacterium sp.
           Marseille]
 gi|151281341|gb|ABR89751.1| site specific integrase/recombinase protein [Janthinobacterium sp.
           Marseille]
          Length = 319

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 94/319 (29%), Positives = 159/319 (49%), Gaps = 21/319 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L NL  +R L+ LT  SY  D  + L F      +     T+  +++ +IR F ++
Sbjct: 10  LDGYLDNLISQRQLAPLTTVSYRRDLLELLAFATASDSK----ATLTGVTHFQIRKFAAQ 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q +  RS+ R LS  + F  +L ++   T + +  ++  K+S  LP+AL    A+ L
Sbjct: 66  LHAQGLNARSIARKLSAWRGFFTWLSEQNAITSNPVDGIKAPKRSKPLPKALAADDAVRL 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ-----------NIMDDQS 186
           V       S ++  +   N A+  LLY  GLR+SE + L  +            I  D  
Sbjct: 126 VAEHAPGKSADS-AMQLCNHAMFELLYSSGLRVSELVGLDVRYAQEARYTSAGWIDFDAH 184

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            + + GKG+K+R VP+  +   A+  +  +    + L+   PLF   RG  ++  V Q  
Sbjct: 185 EVMVTGKGNKMRTVPIGQAAMDALKAWLAVRDTLVKLDPH-PLFLSERGTRVSARVVQLR 243

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           ++   + +GLP     H LRHSFA+H+L + GDLR++Q +LGH  ++ TQIYT+++ +  
Sbjct: 244 LKAHGQAIGLPTDVHPHVLRHSFASHVLQSSGDLRAVQEMLGHASIAATQIYTSLDFQR- 302

Query: 307 GDWMMEIYDQTHPSITQKD 325
              + ++YD  HP   +K 
Sbjct: 303 ---LAQVYDAAHPRAKKKP 318


>gi|153835738|ref|ZP_01988405.1| tyrosine recombinase XerC [Vibrio harveyi HY01]
 gi|148867607|gb|EDL66909.1| tyrosine recombinase XerC [Vibrio harveyi HY01]
          Length = 313

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 154/314 (49%), Gaps = 16/314 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L K  + + + L  E+GLS  T ++Y+         LA     ++ ++   Q+    +R 
Sbjct: 13  LQKPLERFYEFLRSEKGLSLHTQRNYKQQLETMAHHLA-----EMGLKDWSQVDAGWVRQ 67

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
              K   + +   SL   LS ++SF  +L  R   + +    +   +K   LP+ L+  +
Sbjct: 68  LAGKGMREGMKASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDE 127

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++       +E   +  R+ A++ L+YG GLR++E +S+  +++      LR+ GK
Sbjct: 128 VNQLLEV------NEDDPLAVRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVIGK 181

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GDK R VP      + + ++  +   DL    +  LF    G  ++    Q+ + +  + 
Sbjct: 182 GDKERKVPFSGMATEWVGKWLRVR-GDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQK 240

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ ++    + + 
Sbjct: 241 QSVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQH----LAQA 296

Query: 314 YDQTHPSITQKDKK 327
           YDQ HP   +++  
Sbjct: 297 YDQAHPRARKRNDD 310


>gi|15640159|ref|NP_229786.1| site-specific tyrosine recombinase XerC [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121587730|ref|ZP_01677491.1| tyrosine recombinase XerC [Vibrio cholerae 2740-80]
 gi|147673673|ref|YP_001218291.1| site-specific tyrosine recombinase XerC [Vibrio cholerae O395]
 gi|153818950|ref|ZP_01971617.1| tyrosine recombinase XerC [Vibrio cholerae NCTC 8457]
 gi|153822328|ref|ZP_01974995.1| tyrosine recombinase XerC [Vibrio cholerae B33]
 gi|227080364|ref|YP_002808915.1| integrase/recombinase XerC [Vibrio cholerae M66-2]
 gi|229508406|ref|ZP_04397910.1| tyrosine recombinase XerC [Vibrio cholerae BX 330286]
 gi|229508913|ref|ZP_04398403.1| tyrosine recombinase XerC [Vibrio cholerae B33]
 gi|229517027|ref|ZP_04406473.1| tyrosine recombinase XerC [Vibrio cholerae RC9]
 gi|229606679|ref|YP_002877327.1| site-specific tyrosine recombinase XerC [Vibrio cholerae MJ-1236]
 gi|254851512|ref|ZP_05240862.1| tyrosine recombinase xerC [Vibrio cholerae MO10]
 gi|255743919|ref|ZP_05417874.1| tyrosine recombinase XerC [Vibrio cholera CIRS 101]
 gi|262151158|ref|ZP_06028297.1| tyrosine recombinase XerC [Vibrio cholerae INDRE 91/1]
 gi|262167027|ref|ZP_06034744.1| tyrosine recombinase XerC [Vibrio cholerae RC27]
 gi|298501104|ref|ZP_07010904.1| tyrosine recombinase XerC [Vibrio cholerae MAK 757]
 gi|34223078|sp|Q9KVL4|XERC_VIBCH RecName: Full=Tyrosine recombinase xerC
 gi|172047518|sp|A5F4I4|XERC_VIBC3 RecName: Full=Tyrosine recombinase xerC
 gi|254799360|sp|C3LPX0|XERC_VIBCM RecName: Full=Tyrosine recombinase xerC
 gi|9654528|gb|AAF93305.1| integrase/recombinase XerC [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121548029|gb|EAX58107.1| tyrosine recombinase XerC [Vibrio cholerae 2740-80]
 gi|126510512|gb|EAZ73106.1| tyrosine recombinase XerC [Vibrio cholerae NCTC 8457]
 gi|126520154|gb|EAZ77377.1| tyrosine recombinase XerC [Vibrio cholerae B33]
 gi|146315556|gb|ABQ20095.1| tyrosine recombinase XerC [Vibrio cholerae O395]
 gi|227008252|gb|ACP04464.1| integrase/recombinase XerC [Vibrio cholerae M66-2]
 gi|227011870|gb|ACP08080.1| integrase/recombinase XerC [Vibrio cholerae O395]
 gi|229346090|gb|EEO11062.1| tyrosine recombinase XerC [Vibrio cholerae RC9]
 gi|229354030|gb|EEO18963.1| tyrosine recombinase XerC [Vibrio cholerae B33]
 gi|229354679|gb|EEO19601.1| tyrosine recombinase XerC [Vibrio cholerae BX 330286]
 gi|229369334|gb|ACQ59757.1| tyrosine recombinase XerC [Vibrio cholerae MJ-1236]
 gi|254847217|gb|EET25631.1| tyrosine recombinase xerC [Vibrio cholerae MO10]
 gi|255738402|gb|EET93792.1| tyrosine recombinase XerC [Vibrio cholera CIRS 101]
 gi|262024545|gb|EEY43229.1| tyrosine recombinase XerC [Vibrio cholerae RC27]
 gi|262031052|gb|EEY49677.1| tyrosine recombinase XerC [Vibrio cholerae INDRE 91/1]
 gi|297540138|gb|EFH76199.1| tyrosine recombinase XerC [Vibrio cholerae MAK 757]
          Length = 311

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 82/327 (25%), Positives = 163/327 (49%), Gaps = 20/327 (6%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           E   LP+ ++  L    + +   L  E+GLS  T ++Y+        +L      ++ + 
Sbjct: 5   ERTPLPDALAQPL----ERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLV-----QVGLT 55

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
              QL    +R  + + + Q +   S+   LS ++SFL +L  R     +    +   +K
Sbjct: 56  HWTQLDSAWVRQLVMQGKRQGMKASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRK 115

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
             +LP+ L+  +   L++        +   +  R+ AI+ L+YG GLR++E +S+  +++
Sbjct: 116 QRTLPKNLDVDEMAQLLEVT------DDDPLSIRDRAIMELMYGAGLRLAELVSIDIKDV 169

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
              +  +R+ GKG+K R V      ++ + ++  L    L  + +  LF    G  ++  
Sbjct: 170 NLSEGEIRVIGKGNKERKVWFAGQAQEWVGKWLKLRS-QLADSAETALFVSKLGTRISHR 228

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             Q+ + +  +   +    + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT++
Sbjct: 229 SVQKRMAEWGQKQAVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHL 288

Query: 302 NSKNGGDWMMEIYDQTHPSITQKDKKN 328
           + ++    + ++YDQ HP   +K+K +
Sbjct: 289 DFQH----LAQVYDQAHPRARKKNKDD 311


>gi|295398591|ref|ZP_06808623.1| tyrosine recombinase XerD [Aerococcus viridans ATCC 11563]
 gi|294973192|gb|EFG48987.1| tyrosine recombinase XerD [Aerococcus viridans ATCC 11563]
          Length = 309

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 89/317 (28%), Positives = 159/317 (50%), Gaps = 17/317 (5%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E VS +L +  +++L  + +E GL++ ++ SY+ +  + + +L     EK+ +     +S
Sbjct: 7   ERVSMKLTEVIEDFLNTMRVEEGLAENSIISYKQELNRMMTYLNRQGIEKVQV-----IS 61

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
              +   +       +   +    +S ++ F +YLK   +  ++ +  +   KK+  LP 
Sbjct: 62  QDTVLDHLKWMDEDHLATSTRSHYVSTLRHFFRYLKLDGVIEDNPMEKISLPKKTQHLPA 121

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L   +   ++      T   TK +  R+  +L  LY  G+R+SE + +  ++I  D   
Sbjct: 122 VLTLDEVDRIL-----ATPDITKPLGLRDRTLLETLYSTGMRVSEIIHIKLEDIHLDMGF 176

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN---IQLPLFRGIRGKPLNPGVFQ 244
           ++  GKG K R+VP+       I +Y       L  +    Q  LF   RGKPL+     
Sbjct: 177 IQTIGKGGKERLVPIGEMAEDWINKYLTEGRPKLVKDEDETQGYLFVNNRGKPLSRQGVW 236

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + ++++     +    + HTLRHSFATHLL NG DLR +Q +LGH  +STTQIYT+++++
Sbjct: 237 KNLKKMVMMAHITKDISPHTLRHSFATHLLENGADLRVVQELLGHSDISTTQIYTHIHAQ 296

Query: 305 NGGDWMMEIYDQTHPSI 321
           +    M +IY+Q HP  
Sbjct: 297 H----MKDIYNQNHPRA 309


>gi|118579574|ref|YP_900824.1| tyrosine recombinase XerD [Pelobacter propionicus DSM 2379]
 gi|118502284|gb|ABK98766.1| tyrosine recombinase XerD subunit [Pelobacter propionicus DSM 2379]
          Length = 295

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 96/301 (31%), Positives = 153/301 (50%), Gaps = 15/301 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  + +ERGL+  T Q+Y  D  ++L FLA   + +       +++  +I +F+ + R 
Sbjct: 8   FLGYIAVERGLATNTRQAYSRDLGRYLDFLAERGKNE-----PAEVTAADIASFLVRLRD 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   S  R LS I+ F K+L   K   ++    +   +  + LP  L   +   L   
Sbjct: 63  EGLAPASRARCLSAIRMFHKFLMIEKYCDDNPSAILEAPRTLHKLPAFLEPAEVDRLF-- 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                   T   D R+ A+L LLY  GLR+SE +++T + +  D   L + GKGDK R+V
Sbjct: 121 ---SACAGTSGEDLRDRAMLELLYATGLRVSELVTITLRQVNLDVGYLMVVGKGDKERLV 177

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+  S R  +  Y +   + L+   + P LF    G  ++   F   IR+  +   +   
Sbjct: 178 PIGESARGRVRRYIEEARYRLDPQGRTPHLFLSRLGDAMSRQAFWNLIRKRAKLAAIAKD 237

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRHSFATHLL NG DLRS+Q +LGH  LS+TQIYT+V  +     +  ++ + HP
Sbjct: 238 ISPHTLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRER----LKRLHQEIHP 293

Query: 320 S 320
            
Sbjct: 294 R 294


>gi|159901208|ref|YP_001547455.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
 gi|254799344|sp|A9B1E0|XERC_HERA2 RecName: Full=Tyrosine recombinase xerC
 gi|159894247|gb|ABX07327.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 306

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 96/305 (31%), Positives = 158/305 (51%), Gaps = 16/305 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++ + +L  L +ERGL+  T+ +Y  D  QF+ F+      +    +   +S  ++ A
Sbjct: 1   MQQQLEQFLAYLTVERGLTGNTIAAYRTDLDQFVNFIV-----ERNTGSWSNVSRDDLLA 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+   + ++    ++ R  + IKSF +YL+ +   T +   N+ + K    LP+A+   Q
Sbjct: 56  FLLFLKEKRYATSTIARRTAAIKSFFEYLQGQHSITTNPTENLDSPKVDRFLPKAITVAQ 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++  L  +  E      R+ A+L +LY  G+R+SE ++L   ++      +R  GK
Sbjct: 116 VDELLELPLTTSGPE----GLRDKAMLEVLYATGMRVSELVALDVGDVDLAIHQIRCLGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRR 252
            +K R +P++ S   A+ EY D+    ++ N   P LF   RGK L    F   ++    
Sbjct: 172 ANKERNLPIVGSASTALEEYLDIARGQISRNGGDPALFLNHRGKRLTRQGFWLILKGYAE 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            LGL    T HTLRHSFATH+L+ G DLR +Q +LGH  +STTQIYT+V++         
Sbjct: 232 RLGLS-DLTPHTLRHSFATHMLNRGKDLREVQELLGHASISTTQIYTHVSNDRAVK---- 286

Query: 313 IYDQT 317
            YDQ 
Sbjct: 287 -YDQA 290


>gi|256822057|ref|YP_003146020.1| tyrosine recombinase XerD [Kangiella koreensis DSM 16069]
 gi|256795596|gb|ACV26252.1| tyrosine recombinase XerD [Kangiella koreensis DSM 16069]
          Length = 295

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 94/304 (30%), Positives = 158/304 (51%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   + +E+GLS  TL SY  D + F  +L          + + + S  +I+ ++++
Sbjct: 6   IEQFCDQVWMEQGLSDATLSSYRSDLKLFNQWLQKQG------KDLLRSSPFDIQQYLAE 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R T++   RS  R LS  + F +YL +           + + K    +P++L+E +  +L
Sbjct: 60  RYTKQYSSRSTARFLSSARKFYRYLIQSNQIKVDPTQQIDSPKIQPPVPKSLSEDEVDSL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +    L T+     +  R+ A+L LLY  GLRI+E +S+    I   Q  +R+ GKG+K 
Sbjct: 120 LSQPDLETA-----LGLRDKAMLELLYSSGLRITELISVEVNQIGFQQGVMRVIGKGNKE 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+     +AI  Y      +L N  +   LF   RG+ +    F   I+   +  G+
Sbjct: 175 RLVPIGEEALQAISLYIRHGRAELANEKVCDWLFLSTRGQRMTRQTFWHRIKLYAKTAGI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR++Q +LGH  LSTTQIYT+V  +     + +++ +
Sbjct: 235 RKHLSPHTLRHAFATHLLNHGADLRTLQMLLGHSDLSTTQIYTHVAKER----LKQLHSE 290

Query: 317 THPS 320
            HP 
Sbjct: 291 HHPR 294


>gi|262163686|ref|ZP_06031427.1| tyrosine recombinase XerC [Vibrio mimicus VM223]
 gi|262027902|gb|EEY46566.1| tyrosine recombinase XerC [Vibrio mimicus VM223]
          Length = 310

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 82/327 (25%), Positives = 160/327 (48%), Gaps = 17/327 (5%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+   L   +   L +  + +   L  E+GLS  T ++Y+        +LA     ++ +
Sbjct: 1   MKTEEL-TPLPNALAQPLERFYAYLHSEKGLSLYTQRNYKQQLETMARYLA-----QMGL 54

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            +  QL    +R  +   + Q +   S+   LS ++SFL +L  R     +    +   +
Sbjct: 55  TSWPQLDAAWVRQLVVLGKRQGMKASSISTRLSSLRSFLDFLILRGELQANPAKGVSAPR 114

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K   LP+ L+  +   L++        +   +  R+ AI+ L+YG GLR++E +S+  ++
Sbjct: 115 KQRPLPKNLDVDEMAQLLEVT------DDDPLSIRDRAIMELMYGSGLRLAELVSIDMKD 168

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           +      +R+ GKG+K R V      ++ + ++  L     N + +  LF    G  ++ 
Sbjct: 169 VNLRDGEIRVIGKGNKERKVWFAGQAQEWVGKWLKLRSQLANSD-ETALFVSKLGTRISH 227

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              Q+ + +  +   +    + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+
Sbjct: 228 RSVQKRMAEWGQKQAVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH 287

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKDKK 327
           ++ ++    + ++YDQ HP   +K+K 
Sbjct: 288 LDFQH----LAQVYDQAHPRARKKNKD 310


>gi|223041687|ref|ZP_03611883.1| site-specific recombinase XerD [Actinobacillus minor 202]
 gi|223017496|gb|EEF15911.1| site-specific recombinase XerD [Actinobacillus minor 202]
          Length = 301

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 96/312 (30%), Positives = 151/312 (48%), Gaps = 18/312 (5%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           +  L    + +L  L  E GLS  T+ SY  D   F+ +L          +    + +  
Sbjct: 5   APSLDPIVEQFLDTLWQEHGLSDNTVSSYRLDLILFMEWLDES-------RAFLTIDHHA 57

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           ++ F+  R  Q     S  R LS ++ F ++L       +     +   +K + LP+ LN
Sbjct: 58  LQEFLGYRFDQGYKASSSLRMLSCLRKFFRFLYLENYRKDDPTAMLVAPRKPSRLPKTLN 117

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           E+Q + L+D       +    I+ R+ A+L LLY  GLR++E +SLT +N+   Q  +RI
Sbjct: 118 EEQVMDLLDC-----PNPLDPIELRDKAMLELLYATGLRVTELISLTTENLSLRQGVVRI 172

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
            GKGDK R+VPL       I E++       LN      +F   RG+ +    F   I+ 
Sbjct: 173 IGKGDKERLVPLGEEASYWIQEFFQYGRGILLNNEPSSIVFPSKRGQMMTRQTFWHRIKH 232

Query: 250 LRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                G+     + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V       
Sbjct: 233 YAVLAGIDSEKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR--- 289

Query: 309 WMMEIYDQTHPS 320
            +  ++++ HP 
Sbjct: 290 -LKSLHEKYHPR 300


>gi|199598714|ref|ZP_03212128.1| Integrase [Lactobacillus rhamnosus HN001]
 gi|229552169|ref|ZP_04440894.1| integrase XerD [Lactobacillus rhamnosus LMS2-1]
 gi|258508373|ref|YP_003171124.1| tyrosine recombinase XerD [Lactobacillus rhamnosus GG]
 gi|258539584|ref|YP_003174083.1| tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705]
 gi|199590402|gb|EDY98494.1| Integrase [Lactobacillus rhamnosus HN001]
 gi|229314471|gb|EEN80444.1| integrase XerD [Lactobacillus rhamnosus LMS2-1]
 gi|257148300|emb|CAR87273.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus GG]
 gi|257151260|emb|CAR90232.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705]
 gi|259649687|dbj|BAI41849.1| integrase [Lactobacillus rhamnosus GG]
          Length = 293

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 87/302 (28%), Positives = 148/302 (49%), Gaps = 17/302 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +++  L++ERGL++ T  SY+ D   F+ +L+   +            +  I+AF+  + 
Sbjct: 7   DFIHYLDVERGLARTTQVSYQQDLTTFMAWLSDQKQTTFPE------DFGVIQAFLKHQN 60

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
             K    S+ R +S ++ F ++L +        +  +   KK+  LP  L+  +   L+ 
Sbjct: 61  DTK-APASVSRMISALRKFYRFLLREGAIKSDPMTKIDTPKKAQHLPATLSGTEIDALM- 118

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                    TK +  R+ AI  L+Y  GLR+SE + L    +    + L++ GKGDK R+
Sbjct: 119 ----AKPDTTKPLGLRDRAIFELMYATGLRVSEVVGLRLDQLHLAMNLLQVTGKGDKERL 174

Query: 200 VPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+ P     +  Y     P  +       +F    G  L      + ++     +G+  
Sbjct: 175 VPISPQAADWVNRYLQESRPRLIKHQQPKAVFVNFHGHALTRQAIWKNLKAYIASVGIEK 234

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             T HTLRHSFAT LL NG DLR +Q +LGH  +STTQIYT++++++    ++ +Y +TH
Sbjct: 235 DVTPHTLRHSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQH----LVAVYHKTH 290

Query: 319 PS 320
           P 
Sbjct: 291 PR 292


>gi|148260195|ref|YP_001234322.1| site-specific tyrosine recombinase XerC [Acidiphilium cryptum JF-5]
 gi|146401876|gb|ABQ30403.1| phage integrase family protein [Acidiphilium cryptum JF-5]
          Length = 313

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 121/322 (37%), Positives = 175/322 (54%), Gaps = 10/322 (3%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M G+  P   + +    R  +L  L  ER  + LT+ +Y  D  +FL F+  +   + T 
Sbjct: 1   MSGSR-PSGPAADAQALRVEFLDFLVGERRAAALTVSTYGADLAEFLGFVTRHIGAEPTG 59

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             +  LS  + RA+++K  +  +G+ +  + LS ++SF ++L++R          +R  K
Sbjct: 60  ADLAALSLADFRAWLAKAASDGVGNATRAKKLSAVRSFFRWLRQRHGMINEAPGLLRTPK 119

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LPRAL    A  +VD+  L     +  + AR++A++ LLYG GLRI EAL L   +
Sbjct: 120 SRRPLPRALTAPDAAAVVDS--LGDDAASPALAARDTALMALLYGAGLRIHEALGLNIGD 177

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           +  + + L ++GKG + RIVPLLP +R+ I  +    P         PLF G RG  LNP
Sbjct: 178 LPPEGAPLSVRGKGGRQRIVPLLPVLRREIASWLRHHP---APTPDAPLFLGARGARLNP 234

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           GV QR +R  RR  GLP   T H LRHSFATHLL+NG DLR+IQ +LGH  LSTTQ YT 
Sbjct: 235 GVVQRRLRDFRRLNGLPEHATPHALRHSFATHLLANGADLRAIQELLGHASLSTTQRYTA 294

Query: 301 VNSKNGGDWMMEIYDQTHPSIT 322
           V+     D +M ++   HP   
Sbjct: 295 VD----ADRLMAVWQAAHPRAK 312


>gi|319896642|ref|YP_004134835.1| site-specific recombinase xerd [Haemophilus influenzae F3031]
 gi|317432144|emb|CBY80495.1| Site-specific recombinase XerD [Haemophilus influenzae F3031]
          Length = 297

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 151/308 (49%), Gaps = 17/308 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L     +L    IE+GLS+ T+QSY  D      +L           ++  L   +++ F
Sbjct: 4   LALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWLDKNG------LSLETLDAVDLQGF 57

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + +R  +     S  R LS ++   +YL + K   +     + + K  + LP+ L E+Q 
Sbjct: 58  LGERLEKGYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQV 117

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
                + LL+T      ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG
Sbjct: 118 -----SDLLNTPDVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKG 172

Query: 195 DKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K RIVP+       + ++     P  LN      +F   R + +    F   ++     
Sbjct: 173 NKERIVPMGEEAAYWVRQFMLYGRPVLLNGQSSDVVFPSQRTQQMTRQTFWHRVKHYAIL 232

Query: 254 LGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             +     + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  
Sbjct: 233 ADIDADALSPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER----LKR 288

Query: 313 IYDQTHPS 320
           ++++ HP 
Sbjct: 289 LHERFHPR 296


>gi|229817386|ref|ZP_04447668.1| hypothetical protein BIFANG_02648 [Bifidobacterium angulatum DSM
           20098]
 gi|229785175|gb|EEP21289.1| hypothetical protein BIFANG_02648 [Bifidobacterium angulatum DSM
           20098]
          Length = 324

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 82/333 (24%), Positives = 153/333 (45%), Gaps = 20/333 (6%)

Query: 1   MEGNNLPEIVSFELLKERQ-NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
           M+ + +  +   + L   +  ++ ++++ERGLSK T+ +Y  D  ++ ++L      +  
Sbjct: 1   MDRHTMVGMSQTDALTRLETQFIAHIDVERGLSKATVTAYTSDLDRYCVWL-----REAG 55

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           I     +S   +  +I+   +     RS  R+L+ I  F ++   +    +     ++  
Sbjct: 56  ITEPASISRNHVEEYIAHLDSHGASARSKARNLASIHEFHRFALAQHAVADDVSAAVKAP 115

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTS----HETKWIDARNSAILYLLYGCGLRISEALS 175
           K +++LP  L   +   L+D   +            +  R+ A+L  +Y  G R+SEA+ 
Sbjct: 116 KGASTLPDVLTVDEVARLLDCAPVPAPGCVMDVPHAVLMRDKALLEFMYATGCRVSEAVG 175

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC------PFDLNLNIQLPL 229
               +I  ++   R+ GKG K R+VP+      A+  Y D                +  +
Sbjct: 176 TDLNDIDLNERVARLLGKGSKQRLVPVGEYACAAMTRYLDEGRSLLEGCAKSKAPERSAV 235

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F   RG+ ++       + Q  +   +      HTLRHSFATHL+  G D+R++Q +LGH
Sbjct: 236 FLNKRGQRMSRQSVWEVVNQAGKRAHIGKPLHPHTLRHSFATHLIQGGADVRTVQELLGH 295

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
             ++TTQIYT+V+ +N    ++E Y   HP   
Sbjct: 296 ASVTTTQIYTHVSPEN----LIETYLTAHPRAR 324


>gi|261210165|ref|ZP_05924462.1| tyrosine recombinase XerC [Vibrio sp. RC341]
 gi|260840705|gb|EEX67254.1| tyrosine recombinase XerC [Vibrio sp. RC341]
          Length = 310

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 82/327 (25%), Positives = 159/327 (48%), Gaps = 17/327 (5%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+   L   +   L +  + +   L  E+GLS  T ++Y+        +LA     ++ +
Sbjct: 1   MKNEEL-IPLPNGLAQPLERFYTYLHTEKGLSLYTQRNYKQQLETMARYLA-----QMGL 54

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
               QL    +R  +   + + +   S+   LS ++SFL +L  R     +    +   +
Sbjct: 55  ANWSQLDAGWVRQLVVLGKRKGMKASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPR 114

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K   LP+ L+  +   L++        +   +  R+ AI+ L+YG GLR++E +S+  ++
Sbjct: 115 KQRPLPKNLDVDEMAQLLEVT------DDDPLSIRDRAIMELMYGSGLRLAELVSIDVKD 168

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I      +R+ GKG+K R V      ++ + ++  L    L  + +  LF    G  ++ 
Sbjct: 169 INLRDGEIRVIGKGNKERKVWFAGQAQEWVGKWLKLRS-QLADSGEPALFVSKLGTRISH 227

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              Q+ + +  +   +    + H LRHSFATH+L +  +LR++Q +LGH  ++TTQIYT+
Sbjct: 228 RSVQKRMAEWGQKQAVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH 287

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKDKK 327
           ++ ++    + ++YDQ HP   +K+K 
Sbjct: 288 LDFQH----LAQVYDQAHPRARKKNKD 310


>gi|322834929|ref|YP_004214956.1| tyrosine recombinase XerC [Rahnella sp. Y9602]
 gi|321170130|gb|ADW75829.1| tyrosine recombinase XerC [Rahnella sp. Y9602]
          Length = 303

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 82/310 (26%), Positives = 149/310 (48%), Gaps = 17/310 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L    + +L+ L +ER LS LT  +Y       +         +I I   +QL   ++R 
Sbjct: 8   LYPAVEAFLRYLHVERQLSPLTTTNYSRQLEALIAISG-----EIGISHWQQLDAPKVRM 62

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            +++ +   +G  SL   +S ++SFL +L ++ + + +    +   +    LP+ L+  +
Sbjct: 63  LLARSKRAGLGPSSLALRMSSLRSFLDWLVRQGVLSANPAKGISTPRSPKHLPKNLDVDE 122

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D  L         +  R+ A+L ++YG GLR+SE + +  ++I      +R+ GK
Sbjct: 123 VNKLLDIDL------NDPLSVRDRAMLEVMYGGGLRLSELVGIDCKHIDMASGEVRVLGK 176

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R VP+  +    +  + +             +F   +G  ++    Q+   +    
Sbjct: 177 GSKERKVPIGRTAVIWLEHWLERRAD--FNPQDDAMFLSSKGSRISARNVQKRFAEWGVK 234

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+      H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++    +  +
Sbjct: 235 QGVNSHIHPHKLRHSFATHVLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LATV 290

Query: 314 YDQTHPSITQ 323
           YD  HP   +
Sbjct: 291 YDAAHPRAKR 300


>gi|294139500|ref|YP_003555478.1| integrase/recombinase XerD [Shewanella violacea DSS12]
 gi|293325969|dbj|BAJ00700.1| integrase/recombinase XerD [Shewanella violacea DSS12]
          Length = 305

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 97/314 (30%), Positives = 154/314 (49%), Gaps = 16/314 (5%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E   ++       +L +L   RGLS  TL +Y  D R F  ++     E      + Q+S
Sbjct: 6   ESTPYQADPLIDIFLDDLWSNRGLSDNTLAAYRTDLRHFDRYIQELGAE------LVQVS 59

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
              IR ++  R  +     S  R +S ++ F  +L  +K+ T   I  +++ K +  LP 
Sbjct: 60  QELIRGYLDVRFDKGFARTSSARMMSSLRRFFGFLLLKKMITADPIARIKSPKLARKLPD 119

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           +L+E        ++LL+       I+ R+ A+L LLY  GLR++E +SLT + +   Q  
Sbjct: 120 SLSEADV-----DILLNEPDIQDPIECRDRAMLELLYATGLRVTELVSLTMEQLSLRQGL 174

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRY 246
           +R+ GKG K R+VPL       +  Y      +L    +   LF   RG+ +    F   
Sbjct: 175 VRVVGKGGKERLVPLGELAVSEVENYLQGARAELLKGKLSDVLFPSKRGQMMARQTFWYR 234

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           I+      G+    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V     
Sbjct: 235 IKLYALRAGIVTHISPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKAR- 293

Query: 307 GDWMMEIYDQTHPS 320
              + +++ + HP 
Sbjct: 294 ---LSQLHSEHHPR 304


>gi|52424801|ref|YP_087938.1| site-specific tyrosine recombinase XerD [Mannheimia
           succiniciproducens MBEL55E]
 gi|52306853|gb|AAU37353.1| XerC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 298

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 150/305 (49%), Gaps = 17/305 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L + +GLS  T+QSY  D      +L          +++  L  ++++AF+ +
Sbjct: 8   IELFLNELWLGKGLSDNTVQSYRLDLTALSQWLQGQG------KSLETLDSSDLQAFLGE 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  Q     S  R LS ++   +YL +    T+     + + K    LP+ L E+Q    
Sbjct: 62  RVDQGYKATSTARMLSAMRKLFQYLYQESYRTDDPSAILSSPKLPGRLPKYLTEQQV--- 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               LL+       ++ R+ A+L LLY  GLR++E ++L+  NI  +Q  +R+ GKG+K 
Sbjct: 119 --GDLLNAPSTDIPLELRDKAMLELLYATGLRVTELVTLSTDNINLEQGVVRVIGKGNKE 176

Query: 198 RIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVP+       + ++     P  LN      +F   R   +    F   I+       +
Sbjct: 177 RIVPMGEEASYWVGQFILYGRPMLLNGQSSDVIFPSKRALQMTRQTFWHRIKHYAILADI 236

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
              S + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  +++
Sbjct: 237 DTDSLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER----LKRLHE 292

Query: 316 QTHPS 320
           + HP 
Sbjct: 293 KYHPR 297


>gi|33600415|ref|NP_887975.1| site-specific tyrosine recombinase XerD [Bordetella bronchiseptica
           RB50]
 gi|33568014|emb|CAE31927.1| integrase/recombinase [Bordetella bronchiseptica RB50]
          Length = 310

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 85/310 (27%), Positives = 147/310 (47%), Gaps = 14/310 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF--YTEEKITIQTIRQLSYTEIRA 73
            +   ++  + +E GL+  TL +Y  D   F  +L          T  ++R+    +I A
Sbjct: 11  ADLDAFIDAVWLEDGLAANTLAAYRRDLSAFAQWLENPACHPGLATGASLREAGKGDIEA 70

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           + + R  +     +  R L+ ++ F  +  + ++T     L +   K+   LP+ L+E Q
Sbjct: 71  WFAARHAESRA-TTANRRLAALRRFYAWALRERLTPSDPCLTLVTAKQPPRLPKTLSEAQ 129

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QG 192
              L+    L T+        R+ A+L  LY  GLR+SE +S+   ++  ++  +R+  G
Sbjct: 130 VDALLQAPDLDTAR-----GLRDRAMLETLYATGLRVSELVSVKALDVSLNEGVVRVVMG 184

Query: 193 KGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG K R+VPL       I  Y     P  L   +   LF   R +P++   F + +++  
Sbjct: 185 KGGKDRLVPLGAEAAHWIERYAGSARPELLGARVADALFVTARAEPMSRQAFWQLVKKYA 244

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               +    + H LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     + 
Sbjct: 245 LAADIRAPLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARER----LK 300

Query: 312 EIYDQTHPSI 321
            ++   HP  
Sbjct: 301 ALHAAHHPRA 310


>gi|256379436|ref|YP_003103096.1| tyrosine recombinase XerD [Actinosynnema mirum DSM 43827]
 gi|255923739|gb|ACU39250.1| tyrosine recombinase XerD [Actinosynnema mirum DSM 43827]
          Length = 299

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 86/317 (27%), Positives = 141/317 (44%), Gaps = 19/317 (5%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +P +   + +     +L +L +ERG ++ TL SY  D R++L  L            +  
Sbjct: 1   MPGVTPADAVTA---YLDHLAVERGAARNTLDSYARDLRRYLAHLESAG------LGLDA 51

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           ++   +  F++  R   +   S  R+L  ++   ++  +  +T      +++       L
Sbjct: 52  VTEAVVGDFLAGLRESGLAASSAARTLVAVRGLHRFAHREGLTAADPAKDVQPPAAPRRL 111

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P+AL     L L+D      +        R+ A+L LLY  G RISE + L   ++   +
Sbjct: 112 PKALPVADVLRLLD------TAGDTPAALRDRALLELLYSTGARISEVVGLDVDDVDAAE 165

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            T  + GKG K R+VP+      A+  Y       L       LF   RG  L+     +
Sbjct: 166 RTALLDGKGGKQRVVPVGRPALAAVEAYLVRARPVLAKRGGPALFLNARGGRLSRQSAWQ 225

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            ++      G+    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQ+YT V    
Sbjct: 226 VLKTAAERAGVAAEVSPHTLRHSFATHLLEAGADVRVVQELLGHASVTTTQVYTLVT--- 282

Query: 306 GGDWMMEIYDQTHPSIT 322
               + E+Y   HP  T
Sbjct: 283 -VTTLREVYATAHPRAT 298


>gi|302335890|ref|YP_003801097.1| tyrosine recombinase XerD [Olsenella uli DSM 7084]
 gi|301319730|gb|ADK68217.1| tyrosine recombinase XerD [Olsenella uli DSM 7084]
          Length = 321

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 97/330 (29%), Positives = 159/330 (48%), Gaps = 25/330 (7%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L + +  +L  L IERG S  TL++Y  D  +++  L               +S  +I 
Sbjct: 2   DLTRAKDEYLNYLAIERGSSPNTLEAYGRDLGRYVAHL-----RGRGADDPDAVSRHDIE 56

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           A++       +   S++RS++ IK F +++   +IT      ++   +K+  LP  L+ +
Sbjct: 57  AYLETLAEGGLSPSSVQRSVAAIKGFHRFMVSEQITENHPTADLPLPRKALHLPDTLSHE 116

Query: 133 QALTLVDNVLLH-------------TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           Q   L+D                  T         R+ AIL +LYGCGLR+SE  SL  +
Sbjct: 117 QVFRLLDEPFQDACRPAPRALADGGTDDSGAARFYRDKAILEVLYGCGLRVSELCSLELR 176

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKP 237
           +++ D   LRI GKG K R+VP+L +  +A+  Y +     L     I   +F G RG  
Sbjct: 177 DVLLDDEVLRILGKGSKERVVPILGTAARALGSYLEDWRPLLLKPPRICPAVFLGSRGTK 236

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           ++       + +  R  G+      H+LRHS+ATHLL  G DLR++Q +LGH  +STTQ+
Sbjct: 237 ISRQAVFGIVERYGRLTGIE-GLHPHSLRHSYATHLLEGGMDLRAVQELLGHASISTTQL 295

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
           YT+V+  +    +   Y   HP   ++  +
Sbjct: 296 YTHVDRTH----VRMAYLAAHPRADRRHSR 321


>gi|83595067|ref|YP_428819.1| tyrosine recombinase XerD subunit [Rhodospirillum rubrum ATCC
           11170]
 gi|83577981|gb|ABC24532.1| tyrosine recombinase XerD subunit [Rhodospirillum rubrum ATCC
           11170]
          Length = 328

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 93/335 (27%), Positives = 153/335 (45%), Gaps = 22/335 (6%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
            G+  P      L  + + +L+ +  ERG ++ T+++Y  D R +  FL     + +T  
Sbjct: 6   SGDTAPSSRGPSLAVQAEAFLEMMLAERGAARRTVEAYGRDLRDYAAFLREKGLDGLT-- 63

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
               +S   +RA+++      +  RS  R LS ++ F  +L       +   + + + + 
Sbjct: 64  ----VSRPTLRAYLATMAAAGLAPRSQARKLSCLRQFHGFLVSEGRRPDDPTIGLDSPRL 119

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              LPR L+E +   L    L+           R   +L LLY  GLR+SE +SL     
Sbjct: 120 GRPLPRVLSEAEVDAL----LVAAEAGEGARGLRARVLLELLYSTGLRVSELVSLPLSVA 175

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL------NLNIQLPLFRGIRG 235
             D  T+ ++GKGDK R+VPL    R A+ ++    P  L             LF     
Sbjct: 176 NRDPETILVRGKGDKERLVPLGLPARAALRDWLIARPTTLPASGAARRRADRFLFPSSAA 235

Query: 236 K-PLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           +  L    F + + +L    G+ P   + H LRH FA+H+L++G DLR +Q++LGH  ++
Sbjct: 236 EGHLTRDGFAKMLGELALRAGIDPARVSPHVLRHCFASHMLAHGADLRGVQTLLGHADIA 295

Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           TTQIYT+V      D +  +    HP    K + N
Sbjct: 296 TTQIYTHVLD----DRLTTLVRTAHPLARLKGEGN 326


>gi|295426297|ref|ZP_06818957.1| tyrosine recombinase XerD [Lactobacillus amylolyticus DSM 11664]
 gi|295064036|gb|EFG54984.1| tyrosine recombinase XerD [Lactobacillus amylolyticus DSM 11664]
          Length = 299

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 96/312 (30%), Positives = 164/312 (52%), Gaps = 18/312 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + +++L+  +IERGLS+ T+ +Y  D  +FL FL    +EKI       +   EI 
Sbjct: 3   KLNDQIEDYLRFGQIERGLSENTITAYRQDLTEFLNFLQ---QEKIDSWPTEAV---EID 56

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           AF+++++       S+ R +S ++ F ++L ++ I   + ++ + + KK   LP AL + 
Sbjct: 57  AFLARQKDLNKASSSISRMISSLRKFYQWLARQNIQKLNPMIEIDSPKKQRRLPVALTQD 116

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L+        +  K +  R+ A+L ++Y  G+R+SE ++L  +++  D   +++ G
Sbjct: 117 EMDRLL-----AAPNVEKKLGLRDRALLEMMYATGMRVSEVINLQLEDVHPDLKLIKVFG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           KG K R+VP+       + +Y       L          +F   RG  L      + I+ 
Sbjct: 172 KGSKERLVPVSNIALDWLAKYEKEVRESLVLKQGRNTEFVFLNNRGGSLTRQAVWQIIKH 231

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +   +    T HTLRH+FATHLL NG DLR +Q ILGH  +STTQIYTN+  K+    
Sbjct: 232 YCQLANINKDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLTQKH---- 287

Query: 310 MMEIYDQTHPSI 321
           ++E+Y +THP  
Sbjct: 288 ILEVYIETHPRA 299


>gi|305681436|ref|ZP_07404243.1| tyrosine recombinase XerD [Corynebacterium matruchotii ATCC 14266]
 gi|305659641|gb|EFM49141.1| tyrosine recombinase XerD [Corynebacterium matruchotii ATCC 14266]
          Length = 305

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 86/309 (27%), Positives = 146/309 (47%), Gaps = 18/309 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            WL +L++E+G S  TL +Y  D  +++ +L       + +  + Q++ +++ A++++ R
Sbjct: 8   AWLTHLKVEKGYSSNTLSNYRRDLYRYVTWL-----HAVGVTDLNQVTTSQVEAYVTELR 62

Query: 80  T-------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
                   + +   S  R+L   +   K+     + T     ++        LP  L   
Sbjct: 63  RGDPDRNIKPLAVSSAARALIVARGLHKFALLEGLVTTDVAADVSPPATGRHLPDVLTIA 122

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L+D   + T      ID R+ A++ LLYG G RISE  +LT  N  D+   LRI G
Sbjct: 123 EVTQLIDA--IPTDDTASPIDLRDRALIELLYGTGARISEITALTVDNFHDNDGMLRITG 180

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG+K R+VP+      A+ +Y               L    RG+ L+       ++    
Sbjct: 181 KGNKQRLVPVGSQAMAAVDQYLVRARPVFATGASHALLLNTRGRTLSRQSAWAVLKTAAA 240

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +    + HTLRHSFATHLL  G   R +Q +LGH  ++TTQIYT+V+++N    + +
Sbjct: 241 RAHITKDISPHTLRHSFATHLLEGGAGERVVQELLGHSSVTTTQIYTHVSAEN----LRQ 296

Query: 313 IYDQTHPSI 321
            +  +HP  
Sbjct: 297 AWVMSHPRA 305


>gi|229544386|ref|ZP_04433444.1| tyrosine recombinase XerC [Bacillus coagulans 36D1]
 gi|229324871|gb|EEN90548.1| tyrosine recombinase XerC [Bacillus coagulans 36D1]
          Length = 300

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 84/314 (26%), Positives = 151/314 (48%), Gaps = 16/314 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++ EL     ++++ +++E+  S  T++ Y  D   F  FL         I ++ ++ Y 
Sbjct: 1   MNGELSGYLLSFMEYMQVEKNYSAYTIKFYRLDLEDFFAFLTAQ-----GIASLDEVGYP 55

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
             R +++          ++ R +S I+SF K+L + +I  E+    +   K+   LP+  
Sbjct: 56  AGRLYLTMLHEHGYSRATVARKISSIRSFFKFLMRERIVKENPFALLSQPKQHKRLPKFF 115

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            E++   L              +  RN A+L +LY  G+R+SE +++  Q+I  +  T+ 
Sbjct: 116 YEEEMEQLF-----AACEGDDALSRRNRALLEILYATGIRVSECVNIRLQDIDFEFETIH 170

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYI 247
           ++GKG K RIV       +A+ +Y       L    +    LF   RG  L     +  +
Sbjct: 171 VKGKGKKERIVLFGHFAGEAVSDYMAHARKTLMRGKEDHPYLFVNARGGALTDKGVRYIL 230

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            ++ +   L      H LRH+FATHLL++G DLR++Q +LGH  LS+TQ+YT+V  ++  
Sbjct: 231 NEMIKKAALTGKIHPHMLRHTFATHLLNHGADLRTVQDLLGHESLSSTQVYTHVTKEH-- 288

Query: 308 DWMMEIYDQTHPSI 321
             + + Y   HP  
Sbjct: 289 --LRQTYMAYHPRA 300


>gi|90421041|ref|ZP_01228944.1| tyrosine recombinase XerC [Aurantimonas manganoxydans SI85-9A1]
 gi|90334676|gb|EAS48453.1| tyrosine recombinase XerC [Aurantimonas manganoxydans SI85-9A1]
          Length = 319

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 136/313 (43%), Positives = 187/313 (59%), Gaps = 11/313 (3%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL E+  WL  L  ER  S  T+++YE D RQFLIFL  Y      +  +  L   ++R 
Sbjct: 13  LLDEKAAWLTILADERRSSPHTIEAYERDLRQFLIFLTDYHARPAQLGDLADLKTADLRG 72

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F++ RR    G +++ R L+G++SF+++L+++ + + +    MR  K+  SLPR L    
Sbjct: 73  FLAARRRDGAGAKTMGRGLAGVRSFIRHLERKGLASSAGAKAMRAPKQPKSLPRPLTVDD 132

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQ 191
           A+ + +           WI AR+ AIL LLYGCGLRISEALSL P + + D    ++ + 
Sbjct: 133 AMAVTEE--AGAFAADAWIAARDVAILTLLYGCGLRISEALSL-PGDALGDATARSMPVA 189

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG K R+VPLLP+V +A  EY   CP+ L  +    LFRG RG PL P + QR + +LR
Sbjct: 190 GKGGKTRLVPLLPAVLEAAAEYRRRCPYPLTADN--ALFRGARGGPLQPQIVQRAMARLR 247

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             LGLP S T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ YT V+       +M
Sbjct: 248 GVLGLPDSATPHALRHSFATHLLAGGGDLRTIQDLLGHASLSTTQNYTAVDQAR----LM 303

Query: 312 EIYDQTHPSITQK 324
            IY+  HP   ++
Sbjct: 304 SIYEDAHPRARRR 316


>gi|70733299|ref|YP_263073.1| site-specific tyrosine recombinase XerC [Pseudomonas fluorescens
           Pf-5]
 gi|123748313|sp|Q4K3W0|XERC_PSEF5 RecName: Full=Tyrosine recombinase xerC
 gi|68347598|gb|AAY95204.1| tyrosine recombinase XerC [Pseudomonas fluorescens Pf-5]
          Length = 298

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 92/312 (29%), Positives = 152/312 (48%), Gaps = 17/312 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++   +  +L  ER +S  TLQ+Y  D  + L F      EK+ +++   L    +R+
Sbjct: 1   MQQQLDAYCAHLRSERQVSPHTLQAYRRDLEKVLGFC-----EKMQVRSWTDLDIQGLRS 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            I++   Q    RSL R LS ++    YL +  + T      +   K    LP+ L+  +
Sbjct: 56  LIARLHQQGQSSRSLARLLSAVRGLYHYLNREGLCTHDPANGLAPPKGERRLPKTLDTDR 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
            L L+D      + E  ++  R+ AIL L Y CGLR+SE  SL    +      +++ GK
Sbjct: 116 TLQLLDG-----AVEDDFLAHRDQAILELFYSCGLRLSELTSLNLDQLDLADGLVQVHGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R++P+    R A+ ++  L    L+      LF   +G+ L P   Q  ++     
Sbjct: 171 GSKTRVLPVGKKARSALEQWLPLR--ALSNPPDGALFVSQKGRRLGPRAIQLRVKAAGER 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L  +   H LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +
Sbjct: 229 -ELGQNLHPHMLRHSFASHLLESSQDLRAVQELLGHSDIKTTQIYTHLDFQH----LAAV 283

Query: 314 YDQTHPSITQKD 325
           YD  HP   +  
Sbjct: 284 YDSAHPRAKRNK 295


>gi|300767490|ref|ZP_07077402.1| tyrosine recombinase XerD [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|300495309|gb|EFK30465.1| tyrosine recombinase XerD [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
          Length = 305

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 87/314 (27%), Positives = 151/314 (48%), Gaps = 16/314 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +  ++  +  ++L  L +ERGL + T++SY  D   F  +L         I   R +   
Sbjct: 6   IDQKMQDQLADYLHFLRVERGLVENTIKSYSQDLTTFSEYLMSQQ-----ITDYRVVDRY 60

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +  ++           ++  S+S ++ F +YL +        +L +   K++  LP+ L
Sbjct: 61  VLLNYLQYLDEAGKSRNTIIHSVSSLRKFFQYLAQMHAIDTDPMLKIDTPKRAQHLPQVL 120

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           + ++   L+    L+T      +  R+  +L ++Y  GLR+SE ++LT  ++  D   ++
Sbjct: 121 SPREVERLLAVPKLNTP-----LGLRDRTLLEVMYATGLRVSETINLTMDDLHLDLGLIQ 175

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYI 247
             GKGDK RI+P+       I  Y       L         LF    G  L+     + +
Sbjct: 176 TIGKGDKERIIPIGDVAIDFITRYLKTARPKLVSAKRRNSYLFINNHGGKLSRQGVWKNL 235

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +   +  G+  + T HTLRHSFATH+L NG DLR +Q +LGH  +STTQIYT+++ K   
Sbjct: 236 KAEVKAAGIEKNVTPHTLRHSFATHILENGADLRVVQELLGHADISTTQIYTHISKKR-- 293

Query: 308 DWMMEIYDQTHPSI 321
             + E+Y++ HP  
Sbjct: 294 --LAEVYNKYHPRA 305


>gi|319764396|ref|YP_004128333.1| tyrosine recombinase xerc [Alicycliphilus denitrificans BC]
 gi|330826617|ref|YP_004389920.1| tyrosine recombinase XerC [Alicycliphilus denitrificans K601]
 gi|317118957|gb|ADV01446.1| tyrosine recombinase XerC [Alicycliphilus denitrificans BC]
 gi|329311989|gb|AEB86404.1| tyrosine recombinase XerC [Alicycliphilus denitrificans K601]
          Length = 320

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 91/326 (27%), Positives = 155/326 (47%), Gaps = 25/326 (7%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
             +L  E   +L+++ +E+ L+  TL  Y  D ++   F A           + +L+   
Sbjct: 8   PPQLPPEALQYLEHVRVEKRLAARTLTLYTLDLQRLAAFAADAG------LPLLRLTGAH 61

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +R F+++        R +   LSG + F  +  ++ +   + + ++R  K    LP+AL 
Sbjct: 62  VRRFVAQMHAAGRSGRGIALILSGWRGFYAWAARQGLVPHNPVQDVRAPKAPKPLPKALP 121

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP-----------Q 179
             +A+ L ++     S    W++AR++AI+ LLYGCGLR+ E + L              
Sbjct: 122 VDEAVRLAEH---EESGADPWLEARDAAIVELLYGCGLRVGELVGLDVAPSPAAHQQGRG 178

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKPL 238
            I        + GKG K R VP+  +  +A+  +  +             LF G RG  L
Sbjct: 179 WIDLQAGEAHVFGKGAKRRSVPVGRAAAEALRGWLAVRAQPFGGAAADAALFVGRRGARL 238

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +       +RQ  +  GL      H LRHSFA+HLL + GDLR++Q +LGH  ++TTQ+Y
Sbjct: 239 SAQSVWLRLRQRSQRAGLTTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVY 298

Query: 299 TNVNSKNGGDWMMEIYDQTHPSITQK 324
           T ++ ++    +  +YDQ HP   +K
Sbjct: 299 TRLDFQH----LARVYDQAHPRARRK 320


>gi|163859107|ref|YP_001633405.1| site-specific tyrosine recombinase XerC [Bordetella petrii DSM
           12804]
 gi|163262835|emb|CAP45138.1| putative integrase/recombinase [Bordetella petrii]
          Length = 326

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 100/326 (30%), Positives = 157/326 (48%), Gaps = 27/326 (8%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +    WLQ+L   R  S  TL +Y  D RQ  +              + QL+   IR 
Sbjct: 12  LPQPLDAWLQHLRAHRRYSPHTLDAYRRDLRQLAVLAQAAG------LPLEQLANGHIRQ 65

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+++   Q +G RSL R+L+  + F ++         + +  +R  K +  LP+AL+ +Q
Sbjct: 66  FVARLHAQGLGPRSLARTLAAWRGFYQWWAPGAGLAGNPVAGVRAPKAARGLPKALSVEQ 125

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-----------M 182
           A  L+D+     +  T     R+ A+  LLY  GLR+SE + L  +              
Sbjct: 126 AQALLDHATSRLA--TDPAGLRDRAMFELLYSSGLRLSELVGLDIRYERSADYESRSWLN 183

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP----FDLNLNIQLPLFRGIRGKPL 238
            D + + + GKG K R VP+  +   A+  + D  P       +      LF G RG+ +
Sbjct: 184 LDDAEVVVLGKGGKRRAVPVGQAALTALRRWIDARPQLAAAAASAGDAAALFVGARGRRI 243

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            P V Q  + +L +  GLP     H LRHSFA+H+L +  DLR++Q +LGH  +STTQIY
Sbjct: 244 APRVVQLQLARLAQAAGLPAHVHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQIY 303

Query: 299 TNVNSKNGGDWMMEIYDQTHPSITQK 324
           T ++ ++    + + YDQ HP   +K
Sbjct: 304 TRLDFQH----LAKAYDQAHPRAGRK 325


>gi|294637959|ref|ZP_06716226.1| tyrosine recombinase XerC [Edwardsiella tarda ATCC 23685]
 gi|291088891|gb|EFE21452.1| tyrosine recombinase XerC [Edwardsiella tarda ATCC 23685]
          Length = 303

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 143/304 (47%), Gaps = 17/304 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +LQ L +ER LS  T+ +Y       +  L     ++  +     L    +RA +++ R
Sbjct: 14  AFLQMLRVERQLSPRTVDTYRRQLAAIIALL-----QESGVTDWLALDSARVRALVARSR 68

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q +   SL   LS ++SFL +         +    +   ++   LP+ L+      L+ 
Sbjct: 69  RQGLEPASLALRLSALRSFLDWQVSCGALAANPAKGVAAPRQGRHLPKNLDVDDVNRLL- 127

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                   E+  +  R+ A+L L+YG GLR+SE + L  +++      + + GKG K R 
Sbjct: 128 -----AIDESDTLAVRDRAMLELMYGGGLRLSELVGLDCRHLDLATGEVWVLGKGSKERR 182

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +P+     + + ++  L       +    LF   RG  ++P   Q+   +     G+   
Sbjct: 183 LPIGREAVRWVEKWLALRIALQPQD--DALFISSRGGRISPRNVQKRFAEWGVKQGVTSH 240

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRHSFATHLL + GDLR++Q +LGH  LSTTQIYT+++ ++    +  +YD  HP
Sbjct: 241 IHPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LANVYDAAHP 296

Query: 320 SITQ 323
              +
Sbjct: 297 RAKR 300


>gi|242237692|ref|YP_002985873.1| site-specific tyrosine recombinase XerC [Dickeya dadantii Ech703]
 gi|242129749|gb|ACS84051.1| tyrosine recombinase XerC [Dickeya dadantii Ech703]
          Length = 302

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 84/314 (26%), Positives = 151/314 (48%), Gaps = 17/314 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
               L+     +L+ L +ER LS LTL+SY+   +     L     E+  I   R+L   
Sbjct: 3   APSPLVIPVNAFLRYLRVERRLSPLTLRSYQHQLQVIASTL-----EESGISDWRRLDAA 57

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R+  ++ +   +   SL + LS ++SFL +L  R   + +    +   K    LP+ +
Sbjct: 58  GVRSLAARGKRDGLSAASLAQRLSALRSFLDWLVSRGELSANPARGVSAPKAGRHLPKNM 117

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  +   L+             +  R+ A+L ++YG GLR++E + L  +++      + 
Sbjct: 118 DVDETDRLL------AIDLNDPLAVRDRAMLEVMYGAGLRLAELVGLDCRHLDLADGEIW 171

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG K R +P+  +    +  + D+   ++       +F   RGK ++    Q+   +
Sbjct: 172 VLGKGSKERRLPIGATAVAWLRRWLDVR--EIYAPDDDAVFVSSRGKRISMRNVQKRFAE 229

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+      H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++    
Sbjct: 230 WGVKQGISSHVHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH---- 285

Query: 310 MMEIYDQTHPSITQ 323
           +  +YD  HP   +
Sbjct: 286 LASVYDAAHPRAKR 299


>gi|13473627|ref|NP_105195.1| site-specific tyrosine recombinase XerC [Mesorhizobium loti
           MAFF303099]
 gi|34222994|sp|Q98ED9|XERC_RHILO RecName: Full=Tyrosine recombinase xerC
 gi|14024377|dbj|BAB50981.1| site-specific recombinase, integrase/recombinase RipX; XerC
           [Mesorhizobium loti MAFF303099]
          Length = 312

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 141/322 (43%), Positives = 192/322 (59%), Gaps = 11/322 (3%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+   +P     +L   R++WL+ L  ER LS  T+++YE DTRQFL FL  +      I
Sbjct: 1   MQEFLIP--AKPDLQAARESWLKMLARERRLSPETVEAYERDTRQFLHFLTGHCGGSPGI 58

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             I  L   ++R F++ RR    G R+L R L+GI+S L++L++R +   +    +R  +
Sbjct: 59  SDIANLRPADLRGFLAARRNAGAGARTLGRGLAGIRSLLRFLERRGLVNAAGAAALRAPR 118

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +  SLP+ L    A  +V   +     E  WI ARN+A+L LLYG GLRISEAL L   +
Sbjct: 119 QPKSLPKPLTASDAKQVV--SVEGQLAEEPWIAARNAAVLTLLYGSGLRISEALGLAGAD 176

Query: 181 IMDDQST-LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           +  +  T LR+ GKG K R+VP+LP   +AI EY  LCP+ L+      LFRG RG PLN
Sbjct: 177 LASETDTVLRVTGKGGKTRLVPVLPVALRAIAEYRRLCPYHLDPKGL--LFRGARGGPLN 234

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           P + QR + +LR  L LP + T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQIYT
Sbjct: 235 PAIIQRDMAKLRSALNLPDTATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQIYT 294

Query: 300 NVNSKNGGDWMMEIYDQTHPSI 321
            V++      ++EIY+  HP  
Sbjct: 295 GVDTAR----LLEIYESAHPRA 312


>gi|78224235|ref|YP_385982.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15]
 gi|78195490|gb|ABB33257.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15]
          Length = 294

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 103/310 (33%), Positives = 153/310 (49%), Gaps = 16/310 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +E   ++++LE ER +S  TL +Y  D  QF  F+    +E         +S+  IR 
Sbjct: 1   MEQEIAAFIRHLETERNVSPHTLAAYRSDLAQFREFVR---QETGAAAEPEGVSHLLIRR 57

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++          S+ R L+ +++F K+L +     ++    +   KK   +P  L+  +
Sbjct: 58  WLALLHRDHTK-SSVGRKLAAVRAFFKHLIRTGRLVKNPAELVSTPKKEKKVPYHLSIDE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           A  LV+     T  E   +  R+ AIL  LY CG+R+SE   L    I  D  T R+ GK
Sbjct: 117 ATALVE-----TPKEPDILSLRDRAILETLYSCGVRVSELTGLNIGGIDLDDGTARVLGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K RIVP+    R A+  Y           +  PLF   RG  L P   +R + +    
Sbjct: 172 GGKERIVPVGSIARAALSHYLTARNH---PPLDAPLFTNARGGRLTPRSVRRVVDKHILR 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +      + HTLRH+FATHLL  G DLR+IQ +LGH  LSTTQ YT+V    G D +ME+
Sbjct: 229 IAAMRKISPHTLRHTFATHLLEGGADLRAIQELLGHASLSTTQKYTHV----GIDRLMEV 284

Query: 314 YDQTHPSITQ 323
           YD+ HP   +
Sbjct: 285 YDKAHPKARK 294


>gi|320355009|ref|YP_004196348.1| tyrosine recombinase XerD [Desulfobulbus propionicus DSM 2032]
 gi|320123511|gb|ADW19057.1| tyrosine recombinase XerD [Desulfobulbus propionicus DSM 2032]
          Length = 306

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 91/312 (29%), Positives = 154/312 (49%), Gaps = 15/312 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            + +  +  Q +LQ+L ++R L++ T+ +Y+ D   F  F +           I ++   
Sbjct: 8   PANDYNQHLQLFLQHLTLQRRLARNTVAAYQADLEFFFRFFS-----DADAILIERIDKE 62

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            ++ F      ++IG RS  R L+ +++F ++L+ R +   + +  +   K   SLP+ L
Sbjct: 63  HVQQFFQYCHQRRIGARSNARRLAALRAFFRFLQDRGVLAGNPLAEIDAPKIGRSLPKVL 122

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              +   L+             +  RN A+L+LLY  GLR+SE ++L           LR
Sbjct: 123 TIAEVDALL-----RPPSPPTPLAIRNHAMLHLLYASGLRVSELVNLPVNGCNLHTGHLR 177

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIR 248
           I GKG+K RIVP        + +Y +     L      PL F   RG+ +    F + +R
Sbjct: 178 ILGKGNKERIVPFSAVAGTILRDYIERVRPLLLKGKGSPLLFCSNRGEAMTRHRFWQIVR 237

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           ++    G+  + + H LRHSFATHL++ G DLRS+Q +LGH  ++TTQIYT+V+     D
Sbjct: 238 EIALIAGIRKAISPHVLRHSFATHLVAGGADLRSVQMMLGHSDIATTQIYTHVD----AD 293

Query: 309 WMMEIYDQTHPS 320
            +   + + HP 
Sbjct: 294 RLKSTHRRFHPR 305


>gi|319775822|ref|YP_004138310.1| Site-specific recombinase XerD [Haemophilus influenzae F3047]
 gi|329123666|ref|ZP_08252226.1| tyrosine recombinase XerD [Haemophilus aegyptius ATCC 11116]
 gi|317450413|emb|CBY86629.1| Site-specific recombinase XerD [Haemophilus influenzae F3047]
 gi|327469865|gb|EGF15330.1| tyrosine recombinase XerD [Haemophilus aegyptius ATCC 11116]
          Length = 297

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 151/308 (49%), Gaps = 17/308 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L     +L    IE+GLS+ T+QSY  D      +L           ++  L   +++ F
Sbjct: 4   LALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWLDKNG------LSLETLDAVDLQGF 57

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + +R  +     S  R LS ++   +YL + K   +     + + K  + LP+ L E+Q 
Sbjct: 58  LGERLEKGYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQV 117

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
                + LL+T      ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG
Sbjct: 118 -----SDLLNTPDVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKG 172

Query: 195 DKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K RIVP+       + ++     P  LN      +F   R + +    F   ++     
Sbjct: 173 NKERIVPMGEEAAYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAIL 232

Query: 254 LGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             +     + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  
Sbjct: 233 ADIDAEALSPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER----LKR 288

Query: 313 IYDQTHPS 320
           ++++ HP 
Sbjct: 289 LHERFHPR 296


>gi|269137482|ref|YP_003294182.1| site-specific recombinase XerC [Edwardsiella tarda EIB202]
 gi|267983142|gb|ACY82971.1| site-specific recombinase XerC [Edwardsiella tarda EIB202]
 gi|304557555|gb|ADM40219.1| Tyrosine recombinase XerC [Edwardsiella tarda FL6-60]
          Length = 303

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 86/319 (26%), Positives = 151/319 (47%), Gaps = 21/319 (6%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           +LPE +S  +      +LQ + +ER LS  T+++Y        +  +     +  +    
Sbjct: 3   SLPEALSTPVAA----FLQMMRVERQLSPRTVETYRR-----QLAASAALLLEGGLCDWA 53

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            L  T +R+ +++ R Q +   SL   LS ++SFL +   R   T +    +   ++   
Sbjct: 54  ALDTTRVRSLVARSRRQGLEPASLALRLSALRSFLDWQVSRGALTANPAKGVAAPRQGRH 113

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP+ L+      L+D        E   +  R+ A+L ++YG GLR+SE + L  +++   
Sbjct: 114 LPKNLDVDDVNRLLDI------DEGDTLAVRDRAMLEVMYGGGLRLSELVGLDCRHVDLT 167

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
              + + GKG K R +P+     + +  +  L       +    LF    G  ++P   Q
Sbjct: 168 TGEVWVLGKGSKERRLPVGREAVRWLQTWLSLRLSLQPQD--DALFVSRLGGRISPRSVQ 225

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +   +     G+      H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ +
Sbjct: 226 KRFAEWGVKQGVTSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQ 285

Query: 305 NGGDWMMEIYDQTHPSITQ 323
           +    +  +YD  HP   +
Sbjct: 286 H----LATVYDAAHPRAKR 300


>gi|326773392|ref|ZP_08232675.1| tyrosine recombinase XerD [Actinomyces viscosus C505]
 gi|326636622|gb|EGE37525.1| tyrosine recombinase XerD [Actinomyces viscosus C505]
          Length = 311

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 94/318 (29%), Positives = 152/318 (47%), Gaps = 27/318 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L +L +ERGLS  TL +YE D  ++L +L         I   + +S  ++  F+  
Sbjct: 5   LRGYLAHLRVERGLSPHTLSAYERDLGRYLRYL-----RSAGISAPQDVSRNDVAGFLEV 59

Query: 78  RRT-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            RT     + +   S  R+++ ++ + K+L     T+E     +R  +    LP+AL   
Sbjct: 60  LRTGSDGARPLASSSASRTVTAVRGWHKFLLAEGTTSEDPSATVRPPQPGRRLPKALGVD 119

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L++        +   +  R+ A+L +LY  G RISEA+ L   ++  D   LR+ G
Sbjct: 120 EVCRLLE----AAGVDDSPVSLRDRALLEVLYATGARISEAVGLVVDDLDTDSRLLRLFG 175

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQL 250
           KG K R+VP+     +A+  Y       L    +    +F    G+PL+       ++Q 
Sbjct: 176 KGRKERVVPMGAYAWEALDAYLVRGRPVLAEKGRGVPQVFLNTLGRPLSRQSAWAVLQQA 235

Query: 251 RRYLGL-------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
               GL           + HTLRHSFATHLL+ G D+R +Q +LGH  ++TTQIYT V  
Sbjct: 236 AERAGLIGTDGADERRISPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTKVT- 294

Query: 304 KNGGDWMMEIYDQTHPSI 321
               D + E+Y  +HP  
Sbjct: 295 ---VDHLREVYATSHPRA 309


>gi|254483258|ref|ZP_05096490.1| tyrosine recombinase XerC [marine gamma proteobacterium HTCC2148]
 gi|214036481|gb|EEB77156.1| tyrosine recombinase XerC [marine gamma proteobacterium HTCC2148]
          Length = 304

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 89/319 (27%), Positives = 157/319 (49%), Gaps = 16/319 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +   L    + ++  L   R LS  TL++Y+ D      +      E+I  QT  +L   
Sbjct: 1   MKSALTDACKEFIDYLRDVRQLSPHTLENYQRDLASLQRY-----GEQIKKQTAAELDEA 55

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +IRA++S+   + +   S++RSLS  +SF  YL +      +    ++  +K   LP+ L
Sbjct: 56  DIRAWVSQLHRRGLAGSSIQRSLSAARSFFNYLSRINGHPRNPAAAVQAPRKPRKLPKTL 115

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  Q    +         +      R+ A+  L Y  GLR++E  S+   +I      L 
Sbjct: 116 DADQVDRYLMF------EDDSPTALRDHAMAELFYSSGLRLAELNSVNINDIDRGSRLLT 169

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           + GKG+K R VP+  +  KAI ++  + P    + +  + LF   RG+ ++    Q  ++
Sbjct: 170 VTGKGNKTRTVPVGSAALKAIDKWLTVRPDIAADEDASVALFTSNRGQRISVRNIQARLK 229

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
              R  G+      H LRHSFA+H+L + GDLR++Q +LGH  +STTQIYT+++ ++   
Sbjct: 230 LQGRKAGMRQDVHPHMLRHSFASHMLESSGDLRAVQELLGHANISTTQIYTHLDFQH--- 286

Query: 309 WMMEIYDQTHPSITQKDKK 327
            + ++YD  HP   ++ + 
Sbjct: 287 -LAKVYDAAHPRAKRRKRD 304


>gi|291280177|ref|YP_003497012.1| tyrosine recombinase [Deferribacter desulfuricans SSM1]
 gi|290754879|dbj|BAI81256.1| tyrosine recombinase [Deferribacter desulfuricans SSM1]
          Length = 302

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 159/308 (51%), Gaps = 18/308 (5%)

Query: 15  LKERQNWLQ-NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LKE  ++ +  L  ER +S  T++SY  D    + F+          ++++++ Y  +R 
Sbjct: 3   LKEAIDYFENYLISERQVSSNTVKSYLNDLNDLVSFIKDED------KSLKEIDYFALRM 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F++    +     S++R ++ ++SF K+L KR +  ++    ++  KK   L    +   
Sbjct: 57  FVAYLYDKGFSKSSIERKIATLRSFFKFLIKRGLIEDNPARMIKFPKKDKKLFTVFDIDT 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
             +L++        +      R++ IL  LYG G+R+SE +++   +I      +RI GK
Sbjct: 117 IFSLLE-----LPDKETPSGIRDALILEFLYGTGVRVSELVNIKLDDIDFGGMRVRIFGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G K+R++PL   +   I +Y  +    +   I     LF    G  L     +R + +  
Sbjct: 172 GKKMRVIPLSDYIMDLIKKYLSVRENIVQKGIVNTDHLFINKFGTALTDRSVRRIVDKYL 231

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +  GLPL+ + H+ RH+FATHLL NG DLR+IQ +LGH  L+TTQ YT++N       ++
Sbjct: 232 KKAGLPLNYSPHSFRHTFATHLLENGADLRTIQKLLGHSSLATTQKYTHLN----LSEIL 287

Query: 312 EIYDQTHP 319
           ++YD+THP
Sbjct: 288 KVYDKTHP 295


>gi|330962350|gb|EGH62610.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 290

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 93/301 (30%), Positives = 146/301 (48%), Gaps = 17/301 (5%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           +L  ER +S  TL++Y  D  + L F      +K  + +   L    +R+F +++  Q  
Sbjct: 2   HLRSERQVSPHTLEAYRRDLGKVLAFC-----QKAGLSSWTNLDIQHLRSFTARQHQQGQ 56

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
             RSL R LS ++ F KYL +  I        +   K    LP+ L+  +A  L+D    
Sbjct: 57  SSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRAAQLLDG--- 113

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
             + E  ++  R+ AIL LLY  GLR+SE   L    +      +++ GKG K R++P+ 
Sbjct: 114 --AVEEDFLAQRDQAILELLYSSGLRLSELTGLNLDQLDLRAGLVQVLGKGSKTRVLPVG 171

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              RKA+  +  L    L       +F    GK L P   Q  ++       L  +   H
Sbjct: 172 SKARKALESWLPLR--ALTNPQDDAVFVSQHGKRLGPRAVQNRVKAAGER-ELGQNLHPH 228

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +YD  HP   +
Sbjct: 229 MLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAHPRAKR 284

Query: 324 K 324
           K
Sbjct: 285 K 285


>gi|296121441|ref|YP_003629219.1| tyrosine recombinase XerD [Planctomyces limnophilus DSM 3776]
 gi|296013781|gb|ADG67020.1| tyrosine recombinase XerD [Planctomyces limnophilus DSM 3776]
          Length = 315

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 89/319 (27%), Positives = 152/319 (47%), Gaps = 18/319 (5%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
            + LP  +        + ++  L+ E GL++ T+ SYE D ++F  +       +  +  
Sbjct: 13  ASALPTALPS---THVEGFVAYLQGECGLARNTVISYERDIKRFSDWF-----HESGVVR 64

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +  ++  ++  ++      K+   ++ R L  +K F +YL    I  ES    + + K  
Sbjct: 65  VTDITLQDLSGYLRYLHELKLATSTIARHLVSLKMFFRYLMLEGILKESVADLLNSPKLW 124

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             LP+ L+E     L+D               R+ A+L +LY  G R SE  SL  +++ 
Sbjct: 125 EHLPKVLSEDAVNRLLD-----APMHQDLNPYRDRALLAVLYATGCRASEVCSLKMRDLQ 179

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPG 241
            D+   R  GKG+K R+V L P    A+  Y     P     N+  P+F    G+ ++  
Sbjct: 180 LDEGFCRCVGKGNKERLVSLNPVAVSALKTYLARERPARAGTNLDSPVFTSRSGRSIDRI 239

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              + +++    +GL  + T HTLRHSFATH+L+NG ++R++Q +LGH  + TTQIYT+V
Sbjct: 240 QVWKLVKRYASRIGLSDAVTPHTLRHSFATHMLANGAEIRALQELLGHASIRTTQIYTHV 299

Query: 302 NSKNGGDWMMEIYDQTHPS 320
                   +  I+ Q HP 
Sbjct: 300 ----EHSRLKAIHKQCHPR 314


>gi|300773591|ref|ZP_07083460.1| tyrosine recombinase XerD [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300759762|gb|EFK56589.1| tyrosine recombinase XerD [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 297

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 159/304 (52%), Gaps = 17/304 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++ + L++ERGL+  ++++Y  D  +  +F            T+ QLS   ++ F+   
Sbjct: 8   KDFKRYLQLERGLAPHSIEAYLNDISKLEVFCTNQQ------LTVNQLSVDHLQEFLVWL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            T  I   +  R +SG+K+F  YL+   + T++    +++ + S  +P  LN ++   L+
Sbjct: 62  NTFNISPYTQSRLISGLKAFFGYLQLEGLITKNPAELIQSPRLSRKIPVVLNIEEIDQLI 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             + L T+        RN AIL +LYGCGLR+SE ++L   N+      ++++GKG+K R
Sbjct: 122 GALDLSTTD-----GMRNKAILEILYGCGLRVSELVNLRISNLFLHIDFIKVEGKGNKER 176

Query: 199 IVPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           ++P+     K +  Y +       +    +  +F   RG  L+  +    I+ L    GL
Sbjct: 177 LIPIGQHAIKYLNIYLNEIRVQQPVKAGFEDYVFLNKRGTSLSRVMIFLIIKDLAAKTGL 236

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HT RHSFA+HL+  G DLR++Q +LGH  ++TT+IYT+++     D++  +  Q
Sbjct: 237 QKEISPHTFRHSFASHLVEGGADLRAVQDMLGHESITTTEIYTHID----RDYLHAVITQ 292

Query: 317 THPS 320
            HP 
Sbjct: 293 YHPR 296


>gi|145631442|ref|ZP_01787212.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           R3021]
 gi|144982979|gb|EDJ90488.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           R3021]
          Length = 297

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 151/308 (49%), Gaps = 17/308 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L     +L    IE+GLS+ T+QSY  D      +L           ++  L   +++ F
Sbjct: 4   LALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWL------DKNDLSLETLDAVDLQGF 57

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + +R  +     S  R LS ++   +YL + K   +     + + K  + LP+ L E+Q 
Sbjct: 58  LGERLEKGYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQV 117

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
                + LL+T      ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG
Sbjct: 118 -----SDLLNTPDVDVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKG 172

Query: 195 DKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K RIVP+       + ++     P  LN      +F   R + +    F   ++     
Sbjct: 173 NKERIVPMGEEAAYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAIL 232

Query: 254 LGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             +     + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  
Sbjct: 233 ADIDADALSPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER----LKR 288

Query: 313 IYDQTHPS 320
           ++++ HP 
Sbjct: 289 LHERFHPR 296


>gi|33592631|ref|NP_880275.1| site-specific tyrosine recombinase XerD [Bordetella pertussis
           Tohama I]
 gi|33572277|emb|CAE41829.1| integrase/recombinase [Bordetella pertussis Tohama I]
 gi|332382048|gb|AEE66895.1| site-specific tyrosine recombinase XerD [Bordetella pertussis CS]
          Length = 310

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 85/310 (27%), Positives = 147/310 (47%), Gaps = 14/310 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF--YTEEKITIQTIRQLSYTEIRA 73
            +   ++  + +E GL+  TL +Y  D   F  +L          T  ++R+    +I A
Sbjct: 11  ADLDAFIDAVWLEDGLAANTLAAYRRDLSAFAQWLENLACHPGLATGASLREAGKGDIEA 70

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           + + R  +     +  R L+ ++ F  +  + ++T     L +   K+   LP+ L+E Q
Sbjct: 71  WFAARHAESRA-TTANRRLAALRRFYAWALRERLTPSDPCLTLVTAKQPPRLPKTLSEAQ 129

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QG 192
              L+    L T+        R+ A+L  LY  GLR+SE +S+   ++  ++  +R+  G
Sbjct: 130 VDALLQAPDLDTAR-----GLRDRAMLETLYATGLRVSELVSVKALDVSLNEGVVRVVMG 184

Query: 193 KGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG K R+VPL       I  Y     P  L   +   LF   R +P++   F + +++  
Sbjct: 185 KGGKDRLVPLGAEAAHWIERYAGSARPELLGARVADALFVTARAEPMSRQAFWQLVKKYA 244

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               +    + H LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     + 
Sbjct: 245 LAADIHAPLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARER----LK 300

Query: 312 EIYDQTHPSI 321
            ++   HP  
Sbjct: 301 ALHAAHHPRA 310


>gi|323697881|ref|ZP_08109793.1| tyrosine recombinase XerD [Desulfovibrio sp. ND132]
 gi|323457813|gb|EGB13678.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans ND132]
          Length = 307

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 142/305 (46%), Gaps = 16/305 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L++L IE+GLS+ +L  Y  D    L FL   +        ++ L+   +  +++ 
Sbjct: 18  VDRYLEHLLIEKGLSENSLTGYANDLGSLLAFLEERS------FPLKDLTDQTLFLYLTH 71

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R + +  RSL R LS ++ F  +    K   E     + N K    LP  L+ ++   +
Sbjct: 72  LRARGLKSRSLARHLSSLRGFFAFAVGEKWYKEDPGQLLENPKLPRKLPEFLSREEISRV 131

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L     +  +  R+  +L LLY  GLR+SE + +   +       L++ GKG K 
Sbjct: 132 -----LALPDTSTPLGMRDKVMLELLYAAGLRVSELIGMKVLDYDPQVGMLKVFGKGSKD 186

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R++P+  + +  +  Y +          +  +F    GK L      + I++     G+ 
Sbjct: 187 RLIPIHYTAQDYLNRYLEFTRPGFKPR-EDFMFLNRSGKGLTRQGVWKLIKKYAEAAGIK 245

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            S + HT RHSFATHLL  G DLR++Q +LGH  +S T+IYT+V      + +  ++ + 
Sbjct: 246 RSISPHTFRHSFATHLLEGGADLRTVQILLGHADISATEIYTHV----EANRLKTLHRKF 301

Query: 318 HPSIT 322
           HP  T
Sbjct: 302 HPRST 306


>gi|284991421|ref|YP_003409975.1| tyrosine recombinase XerD [Geodermatophilus obscurus DSM 43160]
 gi|284064666|gb|ADB75604.1| tyrosine recombinase XerD [Geodermatophilus obscurus DSM 43160]
          Length = 315

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 88/311 (28%), Positives = 148/311 (47%), Gaps = 23/311 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L +ERGL+  T+ SY  D R++  FL     +   ++ + +++ +++  F++  R 
Sbjct: 16  YLDHLTVERGLAANTISSYRRDLRRYTEFL-----DAAGVRGLGEVAESDVAGFLAALRQ 70

Query: 81  QK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                  +   S  R++  ++   ++     +  +     +R    +  LP+A+  +  +
Sbjct: 71  GDDDHPPLSATSAARAVVAVRGLHRFALLDGLVPDDVAHEVRPPSPARRLPKAIPVESVV 130

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L++               R+ A+L LLYG G RISEA+ L   ++   QS +R+ GKG 
Sbjct: 131 ALIE----AAGALEGPRGLRDRALLELLYGTGARISEAVGLAVDDLDRGQSVVRLAGKGG 186

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQL 250
           K RIVP+     +A+ +Y       L    +       LF   RG  L+       +R  
Sbjct: 187 KQRIVPVGSYALRAVEDYLVRARPALAAAGRGGVRGGALFLNARGGSLSRQSAWAILRTA 246

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               GL    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQ+YT V      D +
Sbjct: 247 AERAGLTAEVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVT----VDRL 302

Query: 311 MEIYDQTHPSI 321
            E+Y  +HP  
Sbjct: 303 REVYASSHPRA 313


>gi|294787053|ref|ZP_06752307.1| tyrosine recombinase XerD [Parascardovia denticolens F0305]
 gi|315226701|ref|ZP_07868489.1| tyrosine recombinase XerD [Parascardovia denticolens DSM 10105]
 gi|294485886|gb|EFG33520.1| tyrosine recombinase XerD [Parascardovia denticolens F0305]
 gi|315120833|gb|EFT83965.1| tyrosine recombinase XerD [Parascardovia denticolens DSM 10105]
          Length = 310

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 85/318 (26%), Positives = 152/318 (47%), Gaps = 16/318 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
             + +    R+ +L  + IE+GLS+ T ++YE D ++++ +LA +      I    Q+  
Sbjct: 3   ATNEDFETGRELFLGYISIEKGLSEATRRAYESDLKKYMAWLARH-----GIDRPDQIRQ 57

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++  F++    +    RS+ R L+ I  + ++L  R +        ++  K ++ LP  
Sbjct: 58  EDVETFVASLSQEGESSRSIARRLASIHEYHRFLTSRGMAQADVSQGVKPPKAASVLPDV 117

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L  ++   L++        +T  +  R+ A+L  LY  G R+SEA+     ++  D    
Sbjct: 118 LTIEEVRRLLEKT--SNERDTDPVVLRDRALLEFLYATGARVSEAVGANLTDVDLDDHFA 175

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVF 243
           R+ GKG+K R+VPL     +A+  Y D     L            +F   +GK L+    
Sbjct: 176 RLTGKGNKQRLVPLGSYACQAMERYLDGPRAQLQAKAAKGAEVNAIFLNKKGKRLSRQSV 235

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              +++     G+      HTLRHS ATHL+  G D+R +Q +LGH  ++TTQIYT+++ 
Sbjct: 236 WEIVQKAADRAGITKEVHPHTLRHSCATHLIQGGADVRMVQELLGHASVTTTQIYTHISP 295

Query: 304 KNGGDWMMEIYDQTHPSI 321
           +     ++E Y   HP  
Sbjct: 296 QT----LIESYMGAHPRA 309


>gi|110639086|ref|YP_679295.1| site-specific recombinase [Cytophaga hutchinsonii ATCC 33406]
 gi|110281767|gb|ABG59953.1| site-specific recombinase [Cytophaga hutchinsonii ATCC 33406]
          Length = 299

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 95/305 (31%), Positives = 155/305 (50%), Gaps = 15/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   L++ER LS  ++++YE D  +F+ FL      + ++  + Q+    I+ F+  
Sbjct: 7   IRQFRDYLKLERSLSGNSVEAYEHDVIKFMQFLELT---EPSVGPL-QVKGKHIQLFLEY 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +   S  R LSGIKSF ++L   +I  E     + + K    LP  L+  +   +
Sbjct: 63  ITELGMSAYSQARILSGIKSFFRFLLMEEIRDEDPSSLIDSPKLGRKLPDTLSFPEIEQI 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +  + L T         RN A+L  LY CGLR+SE   L   N+  D   +++ GKG+K 
Sbjct: 123 LLAIDLSTPE-----GMRNRAMLETLYSCGLRVSELTDLKISNLFFDDGFVKVLGKGNKE 177

Query: 198 RIVPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R+VP+    RK I  Y +   C  D+    +  +F   RG  L+  +    I+ L   +G
Sbjct: 178 RLVPIGRDARKYIGMYRNEVRCHLDIVKGAENYVFLNRRGNKLSRVMVFTIIKNLAVKIG 237

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L  + + HT RHSFATHL+  G DLR++Q +LGH  ++TT+IYT+++     D++ +I  
Sbjct: 238 LKKTVSPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLD----RDYLQQIIK 293

Query: 316 QTHPS 320
             HP 
Sbjct: 294 DFHPR 298


>gi|145636556|ref|ZP_01792224.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittHH]
 gi|145270381|gb|EDK10316.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittHH]
          Length = 297

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 151/308 (49%), Gaps = 17/308 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L     +L    IE+GLS+ T+QSY  D      +L           ++  L   +++ F
Sbjct: 4   LALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWL------DKNDLSLETLDAVDLQGF 57

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + +R  +     S  R LS ++   +YL + K   +     + + K  + LP+ L E+Q 
Sbjct: 58  LGERLEKGYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQV 117

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
                + LL+T      ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG
Sbjct: 118 -----SDLLNTPDVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKG 172

Query: 195 DKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K RIVP+       + ++     P  LN      +F   R + +    F   ++     
Sbjct: 173 NKERIVPMGEEAAYWVRQFILYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAIL 232

Query: 254 LGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             +     + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  
Sbjct: 233 ADIDADTLSPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER----LKR 288

Query: 313 IYDQTHPS 320
           ++++ HP 
Sbjct: 289 LHERFHPR 296


>gi|149191484|ref|ZP_01869733.1| site-specific tyrosine recombinase XerC [Vibrio shilonii AK1]
 gi|148834672|gb|EDL51660.1| site-specific tyrosine recombinase XerC [Vibrio shilonii AK1]
          Length = 313

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 83/325 (25%), Positives = 156/325 (48%), Gaps = 20/325 (6%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           +++   L K  + + + L  E+GLS  T ++Y        + L      ++ I    Q+ 
Sbjct: 4   QVLPSGLQKPLERFYEYLRSEKGLSLHTQRNYRQQLETMGMHL-----HEMGIGAWTQVD 58

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
              +R    K   + +   S+   LS ++SF  +L  R   T +    +   +K   LP+
Sbjct: 59  AGWVRQLAGKGMREGMKASSIATRLSSLRSFFDFLILRGELTANPAKGVSAPRKQRPLPK 118

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L+  +   L++        E   +  R+ A++ ++YG GLR++E +S+  +++      
Sbjct: 119 NLDVDEVNQLLEV------DEDDPLAVRDRAMMEMMYGAGLRLAEMVSIDVKHLNLSSGE 172

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           LR+ GKG+K R VP      +   ++  +   +L    ++ LF    G  ++    Q+ +
Sbjct: 173 LRVIGKGNKERKVPFSGYATEWAKKWLKVR-GELAKPGEVALFVSKLGTRISHRSVQKRM 231

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +  +   L    + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ ++  
Sbjct: 232 AEWGQKQSLASHVSPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQH-- 289

Query: 308 DWMMEIYDQTHPSI----TQKDKKN 328
             + + YDQ HP      T K K++
Sbjct: 290 --LAQAYDQAHPRAHKNGTPKKKED 312


>gi|145628659|ref|ZP_01784459.1| tyrosine recombinase [Haemophilus influenzae 22.1-21]
 gi|144979129|gb|EDJ88815.1| tyrosine recombinase [Haemophilus influenzae 22.1-21]
 gi|309972530|gb|ADO95731.1| Site-specific, tyrosine recombinase XerD [Haemophilus influenzae
           R2846]
          Length = 297

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 151/308 (49%), Gaps = 17/308 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L     +L    IE+GLS+ T+QSY  D      +L           ++  L   +++ F
Sbjct: 4   LALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWL------DKNDLSLETLDAVDLQGF 57

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + +R  +     S  R LS ++   +YL + K   +     + + K  + LP+ L E+Q 
Sbjct: 58  LGERLEKGYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQV 117

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
                + LL+T      ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG
Sbjct: 118 -----SDLLNTPDVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKG 172

Query: 195 DKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K RIVP+       + ++     P  LN      +F   R + +    F   ++     
Sbjct: 173 NKERIVPMGEEAAYWVRQFMLYGRPVLLNGQSSDVVFPSQRTQQMTRQTFWHRVKHYAIL 232

Query: 254 LGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             +     + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  
Sbjct: 233 ADIDADALSPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER----LKR 288

Query: 313 IYDQTHPS 320
           ++++ HP 
Sbjct: 289 LHERFHPR 296


>gi|110835195|ref|YP_694054.1| integrase/recombinase XerC [Alcanivorax borkumensis SK2]
 gi|122959294|sp|Q0VM16|XERC_ALCBS RecName: Full=Tyrosine recombinase xerC
 gi|110648306|emb|CAL17782.1| integrase/recombinase XerC [Alcanivorax borkumensis SK2]
          Length = 307

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 93/314 (29%), Positives = 164/314 (52%), Gaps = 16/314 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+    +L +L  ER LS  T+  Y+ D  +    L          Q    L+  ++R+ 
Sbjct: 9   LQTVNTFLTHLASERRLSPHTVNGYQRDLIEARTLLGS--------QPWDTLTVHDMRSL 60

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
            +    Q    ++++R LS +++F +YL +  +  ++  +++R  K    LP+AL+  Q 
Sbjct: 61  AASLHRQGKSGKTIQRMLSTLRTFFRYLMREGLARDNPAIDIRAPKSGKRLPKALDVDQV 120

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D      +  ++ +  R+ AI+ LLY CGLR++E LSL   +I   +S L + GKG
Sbjct: 121 SHLLD----AGTSNSEPLALRDQAIMELLYACGLRLAELLSLNLDSIDLHESQLLVTGKG 176

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +K R +P+      A+  +  + P  +  + Q  LF    G+ L+P   Q+ +++     
Sbjct: 177 NKTRQLPVGKPALTAVRRWLQVRPMLIKSSDQNALFISKNGRRLSPSSVQQRLKRHALER 236

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           GL      H LRHSFATHLL + GDLR++Q +LGH  L+TTQ+YT+++ ++    + ++Y
Sbjct: 237 GLDAHLHPHKLRHSFATHLLESSGDLRAVQELLGHADLATTQVYTHLDFQH----LAQVY 292

Query: 315 DQTHPSITQKDKKN 328
           D  HP   ++   +
Sbjct: 293 DGAHPRAQRRKDDD 306


>gi|145638777|ref|ZP_01794386.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittII]
 gi|148827463|ref|YP_001292216.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittGG]
 gi|145272372|gb|EDK12280.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittII]
 gi|148718705|gb|ABQ99832.1| tyrosine recombinase [Haemophilus influenzae PittGG]
 gi|309750267|gb|ADO80251.1| Site-specific, tyrosine recombinase XerD [Haemophilus influenzae
           R2866]
          Length = 297

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 91/308 (29%), Positives = 150/308 (48%), Gaps = 17/308 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L     +L    IE+GLS+ T+QSY  D      +L           ++  L    ++ F
Sbjct: 4   LALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWL------DKNDLSLETLDAVHLQGF 57

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + +R  +     S  R LS I+   +YL + K   +     + + K  + LP+ L E+Q 
Sbjct: 58  LGERLEKGYKATSTARMLSAIRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQV 117

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
                + LL+T      ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG
Sbjct: 118 -----SDLLNTPDVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKG 172

Query: 195 DKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K RIVP+       + ++     P  LN      +F   R + +    F   ++     
Sbjct: 173 NKERIVPMGEEAAYWVRQFMLYGRPVLLNGQSSDVVFPSQRTQQMTRQTFWHRVKHYAIL 232

Query: 254 LGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             +     + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  
Sbjct: 233 ADIDADALSPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER----LKR 288

Query: 313 IYDQTHPS 320
           ++++ HP 
Sbjct: 289 LHERFHPR 296


>gi|304311873|ref|YP_003811471.1| Phage integrase/ Tyrosine recombinase XerD [gamma proteobacterium
           HdN1]
 gi|301797606|emb|CBL45827.1| Phage integrase/ Tyrosine recombinase XerD [gamma proteobacterium
           HdN1]
          Length = 316

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 93/324 (28%), Positives = 152/324 (46%), Gaps = 20/324 (6%)

Query: 2   EGNNLPEIVSFELLKERQN----WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK 57
           + +  P  ++  L  E +     WL  + +E+GLS  TL++Y  D  Q+  + +      
Sbjct: 7   DESGGPAWLTLPLRSEDEQRISAWLDAVWLEKGLSSRTLEAYRQDLEQWCRWCSEQ---- 62

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
                + Q+    ++ ++  R       RSL R LS ++ F  Y  +    T+     + 
Sbjct: 63  --AVLLEQVDADTVQRYLQARAQHGTHSRSLARMLSCLRGFFAYQVRAGALTQDPTALVE 120

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             K    LPR+++E     L+        +    ++ R+ A+L +LY  GLR+SE + L 
Sbjct: 121 APKSGRPLPRSISEADVSALL-----AAPNLEDPLELRDRAMLEVLYATGLRVSELIGLR 175

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGK 236
              I   Q  +R+ GKG K R+VPL       +  Y        L+ +    +F G RG 
Sbjct: 176 LAQINRRQGVVRVMGKGSKERLVPLGEEALFWLERYFLQARALLLSSSDDDIVFPGRRGT 235

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            +    F   I+   +  GL +  + HTLRH+FATHL+++G DLR +Q +LGH  LSTTQ
Sbjct: 236 EMTRQAFWYRIKYHAQQAGLRVHLSPHTLRHAFATHLINHGADLRVVQMLLGHSDLSTTQ 295

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPS 320
           IYT+V        + +++ Q HP 
Sbjct: 296 IYTHV----ARLRLKQLHAQHHPR 315


>gi|218532541|ref|YP_002423357.1| tyrosine recombinase XerC [Methylobacterium chloromethanicum CM4]
 gi|218524844|gb|ACK85429.1| tyrosine recombinase XerC [Methylobacterium chloromethanicum CM4]
          Length = 365

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 127/314 (40%), Positives = 184/314 (58%), Gaps = 8/314 (2%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
              L    + W + L  ER ++  T+++YE D RQFLI  A  +    TI  +  L   +
Sbjct: 20  DAALRAAMRGWREALARERRMAANTVEAYERDLRQFLIHRAARSG-TPTIAGLIALKPRD 78

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +RAF++ RR + IG RSL R L+G++SF ++L++    + + +  +R+ K    LPR L 
Sbjct: 79  LRAFMAARRAEGIGGRSLMRMLAGLRSFARFLEREGHGSVAALGAVRSPKVERRLPRPLP 138

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLR 189
              AL +             W+ AR++A++ LLYG GLRISEAL LT ++  M     +R
Sbjct: 139 ISAALAMTAPETRPDDDRAPWVLARDAAVIALLYGSGLRISEALGLTARDAPMPGIDEVR 198

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG K+R VP+LP+V +A+  Y  LCP  L  + + PLF G++G PL+P V Q  +  
Sbjct: 199 VTGKGGKVRAVPVLPAVAEAVAAYLSLCPHPL--DPEGPLFVGVKGGPLSPRVVQYAVSA 256

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           LR  LGLP S T H LRHSFATHLL+  G+LR+IQ +LGH  LSTTQIYT V++      
Sbjct: 257 LRGALGLPESATPHALRHSFATHLLARRGELRAIQELLGHASLSTTQIYTKVDAAR---- 312

Query: 310 MMEIYDQTHPSITQ 323
           +M  ++  HP   +
Sbjct: 313 LMSAFEDAHPRARR 326


>gi|325577298|ref|ZP_08147782.1| tyrosine recombinase XerD [Haemophilus parainfluenzae ATCC 33392]
 gi|325160880|gb|EGC73001.1| tyrosine recombinase XerD [Haemophilus parainfluenzae ATCC 33392]
          Length = 297

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 90/302 (29%), Positives = 149/302 (49%), Gaps = 17/302 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L    IE+GLS+ T+QSY  D      +L           ++  L   +++ F+  R  
Sbjct: 10  FLNEYWIEKGLSENTVQSYRLDLTALCDWLDKQN------LSLETLDPLDLQQFLGSRLE 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     S  R LS ++   +YL + K  T+     + + K  + LP+ L E+Q   L+  
Sbjct: 64  QGYKATSTARMLSAMRKLFQYLYREKYRTDDPSAVLNSPKLPSRLPKYLTEQQVTDLL-- 121

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
              +T      ++ R+ A+L LLY  GLR++E ++LT +N+   Q  +R+ GKG+K RIV
Sbjct: 122 ---NTPDVEIPLELRDKAMLELLYATGLRVTELVTLTIENMNLQQGVVRVIGKGNKERIV 178

Query: 201 PLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+       + ++     P  LN      +F   R + +    F   I+       +   
Sbjct: 179 PMGEEAAFWVRQFVLYGRPILLNGQSSDVVFPSQRAQQMTRQTFWHRIKHYAVLAEIDTD 238

Query: 260 -TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++++ H
Sbjct: 239 ALSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER----LKHLHERFH 294

Query: 319 PS 320
           P 
Sbjct: 295 PR 296


>gi|166710518|ref|ZP_02241725.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 345

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 92/328 (28%), Positives = 155/328 (47%), Gaps = 20/328 (6%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK----- 57
             + P I S ++      +L  L++ER +S  TL +Y  D    + +      E      
Sbjct: 30  TTSTPSIESADV-SSVDEFLTYLQVERQVSAHTLDAYRRDLAALVAWTGERNTEDGAQQT 88

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
            T     QL    +R F++    + +  +SL+R LS  +S+  +L K      S    +R
Sbjct: 89  ATPVDSAQLDSAHLRQFVAAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIAASPAAALR 148

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             K    LP+ L+  +A+ LV+            +  R+ A+L L Y  GLR+SE  +L 
Sbjct: 149 APKAPRKLPQVLDADEAVRLVEVP------TDAPLGLRDRALLELFYSSGLRLSELCALR 202

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
            +++  D   + + GKG K R+VP+      A+ ++      D   +    +F G  G  
Sbjct: 203 WRDLDLDSGLVMVLGKGSKQRLVPVGSHAIAALRQWR----RDSGASADAHVFPGRAGGA 258

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           ++    Q  I+QL    G+      H LRHSFA+H+L + GDLR +Q +LGH  ++TTQI
Sbjct: 259 ISQRAVQIRIKQLAVRQGMFKDVHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQI 318

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           YT+++ ++    + ++YD  HP   +K 
Sbjct: 319 YTHLDFQH----LAKVYDAAHPRARRKK 342


>gi|33595884|ref|NP_883527.1| site-specific tyrosine recombinase XerD [Bordetella parapertussis
           12822]
 gi|33565963|emb|CAE36514.1| integrase/recombinase [Bordetella parapertussis]
          Length = 310

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 85/310 (27%), Positives = 147/310 (47%), Gaps = 14/310 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF--YTEEKITIQTIRQLSYTEIRA 73
            +   ++  + +E GL+  TL +Y  D   F  +L          T  ++R+    +I A
Sbjct: 11  ADLDAFIDAVWLEDGLAANTLAAYRRDLSAFAQWLENPACHPGLATGHSLREAGKGDIEA 70

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           + + R  +     +  R L+ ++ F  +  + ++T     L +   K+   LP+ L+E Q
Sbjct: 71  WFAARHAESRA-TTANRRLAALRRFYAWALRERLTPSDPCLTLVTAKQPPRLPKTLSEAQ 129

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QG 192
              L+    L T+        R+ A+L  LY  GLR+SE +S+   ++  ++  +R+  G
Sbjct: 130 VDALLQAPDLDTAR-----GLRDRAMLETLYATGLRVSELVSVKALDVSLNEGVVRVVMG 184

Query: 193 KGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG K R+VPL       I  Y     P  L   +   LF   R +P++   F + +++  
Sbjct: 185 KGGKDRLVPLGAEAAHWIERYAGSARPELLGARVADALFVTARAEPMSRQAFWQLVKKYA 244

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               +    + H LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     + 
Sbjct: 245 LAADIRAPLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVACER----LK 300

Query: 312 EIYDQTHPSI 321
            ++   HP  
Sbjct: 301 ALHAAHHPRA 310


>gi|197118261|ref|YP_002138688.1| integrase/recombinase XerD [Geobacter bemidjiensis Bem]
 gi|197087621|gb|ACH38892.1| integrase/recombinase XerD [Geobacter bemidjiensis Bem]
          Length = 292

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 92/301 (30%), Positives = 147/301 (48%), Gaps = 18/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +E+G +  T+ +Y  D  ++L+FL     + I          +++  F++K + 
Sbjct: 8   FLNYLLVEKGAAANTVSAYSRDLNRYLLFLGEREPDGIR--------PSDVTGFLAKLKG 59

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + I  RS  R+LS ++   ++L +   +  +    +   K    LP  L+ ++   L+ +
Sbjct: 60  EGIAPRSRARALSALRMLHRFLLREGYSELNPTAIIEAPKGVRKLPAVLSGREVEALLSS 119

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            L     +T   + R+ A+L LLY  GLR+SE + L    +      L   GKGDK R+V
Sbjct: 120 PL-----DTGAQELRDKAMLELLYATGLRVSELVGLKLSEVNLSAGYLMTIGKGDKERLV 174

Query: 201 PLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+  S   A   Y      +L        LF    G  ++   F   I++     G+  S
Sbjct: 175 PMGESACHATGVYLQQARGELLKEKASTLLFLSRLGGGMSRQAFWNIIKKRALQAGVRTS 234

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRHSFATHLL NG DLRS+Q +LGH  LS+TQIYT+V  +     M +++   HP
Sbjct: 235 ISPHTLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRER----MKKLHADFHP 290

Query: 320 S 320
            
Sbjct: 291 R 291


>gi|15966434|ref|NP_386787.1| site-specific tyrosine recombinase XerD [Sinorhizobium meliloti
           1021]
 gi|307318393|ref|ZP_07597828.1| tyrosine recombinase XerD [Sinorhizobium meliloti AK83]
 gi|34222988|sp|Q92ME3|XERD_RHIME RecName: Full=Tyrosine recombinase xerD
 gi|15075705|emb|CAC47260.1| Probable integrase/recombinase DNA recombination protein
           [Sinorhizobium meliloti 1021]
 gi|306896075|gb|EFN26826.1| tyrosine recombinase XerD [Sinorhizobium meliloti AK83]
          Length = 311

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 92/315 (29%), Positives = 155/315 (49%), Gaps = 16/315 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+ +  ERG +  TLQSYE D      FL            +   S  ++R+++S 
Sbjct: 9   VEAFLEMMSAERGAAANTLQSYERDLEDARSFLRSRG------TGLTDASADDLRSYLSH 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q     S  R LS ++ F K+L    + T+     +   KK+ +LP+ L+ +    L
Sbjct: 63  LAGQGFKASSQARRLSALRQFYKFLYAEGLRTDDPTGILDAPKKARTLPKTLSIEDVTRL 122

Query: 138 VDNVLLHTSHETKWIDARNS--AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +          +  + A+    A++ LLY  G+R+SE +SL    +  +   L I+GKG+
Sbjct: 123 IGQAEAEAKSGSDDVMAKLRMHALIELLYATGMRVSELVSLPASVLAQNGRFLIIRGKGN 182

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYL 254
           K R+VPL  +  +A+  Y +    +   +    LF    +   L   VF R ++ L    
Sbjct: 183 KERLVPLSQAAIRAMRAYGEALQEESADSP--WLFPSNGKSGHLPRQVFARDLKSLAARA 240

Query: 255 GLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           G+ ++  + H LRH+FA+HLL+NG DLR++Q +LGH  +STTQIYT+V  +     + ++
Sbjct: 241 GIRVAAISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEER----LHDL 296

Query: 314 YDQTHPSITQKDKKN 328
               HP   Q  K++
Sbjct: 297 VQNHHPLAKQAKKQD 311


>gi|156972655|ref|YP_001443562.1| site-specific tyrosine recombinase XerC [Vibrio harveyi ATCC
           BAA-1116]
 gi|166918907|sp|A7N0V8|XERC_VIBHB RecName: Full=Tyrosine recombinase xerC
 gi|156524249|gb|ABU69335.1| hypothetical protein VIBHAR_00307 [Vibrio harveyi ATCC BAA-1116]
          Length = 313

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 153/314 (48%), Gaps = 16/314 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L K  + + + L  E+GLS  T ++Y+         LA     ++ ++   Q+    +R 
Sbjct: 13  LQKPLERFYEFLRSEKGLSLHTQRNYKQQLETMAHHLA-----EMGLKDWSQVDAGWVRQ 67

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
              K   + +   SL   LS ++SF  +L  R     +    +   +K   LP+ L+  +
Sbjct: 68  LAGKGMREGMKASSLATRLSSLRSFFDFLILRGEMLANPAKGVSAPRKKRPLPKNLDVDE 127

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++       +E   +  R+ A++ L+YG GLR++E +S+  +++      LR+ GK
Sbjct: 128 VNQLLEV------NEDDPLAVRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVIGK 181

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GDK R VP      + + ++  +   DL    +  LF    G  ++    Q+ + +  + 
Sbjct: 182 GDKERKVPFSGMATEWVGKWLRVR-GDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQK 240

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ ++    + + 
Sbjct: 241 QSVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQH----LAQA 296

Query: 314 YDQTHPSITQKDKK 327
           YDQ HP   +++  
Sbjct: 297 YDQAHPRARKRNDD 310


>gi|145632561|ref|ZP_01788295.1| tyrosine recombinase [Haemophilus influenzae 3655]
 gi|148825411|ref|YP_001290164.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittEE]
 gi|229845011|ref|ZP_04465148.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           6P18H1]
 gi|260582592|ref|ZP_05850382.1| tyrosine recombinase XerD [Haemophilus influenzae NT127]
 gi|144986756|gb|EDJ93308.1| tyrosine recombinase [Haemophilus influenzae 3655]
 gi|148715571|gb|ABQ97781.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittEE]
 gi|229812145|gb|EEP47837.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           6P18H1]
 gi|260094403|gb|EEW78301.1| tyrosine recombinase XerD [Haemophilus influenzae NT127]
 gi|301169019|emb|CBW28616.1| site-specific tyrosine recombinase [Haemophilus influenzae 10810]
          Length = 297

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 151/308 (49%), Gaps = 17/308 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L     +L    IE+GLS+ T+QSY  D      +L           ++  L   +++ F
Sbjct: 4   LALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWL------DKNDLSLETLDAVDLQGF 57

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + +R  +     S  R LS ++   +YL + K   +     + + K  + LP+ L E+Q 
Sbjct: 58  LGERLEKGYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQV 117

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
                + LL+T      ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG
Sbjct: 118 -----SDLLNTPDVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKG 172

Query: 195 DKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K RIVP+       + ++     P  LN      +F   R + +    F   ++     
Sbjct: 173 NKERIVPMGEEAAYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAIL 232

Query: 254 LGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             +     + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  
Sbjct: 233 ADIDADALSPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER----LKR 288

Query: 313 IYDQTHPS 320
           ++++ HP 
Sbjct: 289 LHERFHPR 296


>gi|300113125|ref|YP_003759700.1| tyrosine recombinase XerC [Nitrosococcus watsonii C-113]
 gi|299539062|gb|ADJ27379.1| tyrosine recombinase XerC [Nitrosococcus watsonii C-113]
          Length = 300

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 97/307 (31%), Positives = 160/307 (52%), Gaps = 16/307 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q +L +L+ ERGLS  T+ SY  D  + + F          I   + L   ++RA ++ 
Sbjct: 9   IQKFLLHLQYERGLSPQTVVSYRRDLAKVMAFCGRN-----GIGNWQALDAQKVRALVAA 63

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +  RS++R LS ++SF  YL++  I   +    +   +   +LP  L+  QA  L
Sbjct: 64  YHQTGLSGRSIQRLLSALRSFYVYLQRENIVDHNPAQGISAPRGKRALPPTLDVDQAAQL 123

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++      +     +  R+ AIL L Y  GLR++E + L    +  D + +R+ GKG K 
Sbjct: 124 LN------TKPCGDLLLRDQAILELFYSSGLRLAELVGLNLSALDLDTALVRVVGKGAKT 177

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R VPL    + A+L +  +    ++   Q  +F   RG+ L+P   Q+ +R      G  
Sbjct: 178 REVPLGRRAKAALLAWLPIRAGWIS-QSQEAVFVTRRGRRLSPRAVQKRLRLWGLRQGFD 236

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           ++   H LRH+FA+HLL + GDLR++Q +LGH  +STTQIYT+++ ++    + +IYDQT
Sbjct: 237 VAIHPHRLRHAFASHLLESSGDLRAVQELLGHADISTTQIYTHLDFQH----LAKIYDQT 292

Query: 318 HPSITQK 324
           HP   +K
Sbjct: 293 HPRARKK 299


>gi|163750315|ref|ZP_02157556.1| integrase/recombinase XerD [Shewanella benthica KT99]
 gi|161329987|gb|EDQ00972.1| integrase/recombinase XerD [Shewanella benthica KT99]
          Length = 308

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 93/304 (30%), Positives = 149/304 (49%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L +L   RGLS  TL +Y  D R F  ++            + Q+S   IR ++  
Sbjct: 19  IDTFLDDLWSNRGLSDNTLAAYRTDLRHFDRYMQKLGG------GLVQVSQQLIRDYLDV 72

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  +     S  R +S ++ F  +L  +K+     I  +++ K +  LP +L+E     L
Sbjct: 73  RFDKGFARTSSARLMSSLRRFYGFLILKKLIQVDPIARIKSPKLARKLPDSLSEADVDIL 132

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++   L        I+ R+ A+L LLY  GLR++E +SLT + +   Q  +R+ GKG K 
Sbjct: 133 LNEPDLQEP-----IECRDRAMLELLYATGLRVTELVSLTMEQLSLRQGLVRVVGKGGKE 187

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       +  Y +    +L    +   LF   RG+ +    F   I+      G+
Sbjct: 188 RLVPLGEIAVNEVEHYLEGARAELLKGKLSDVLFPSRRGQMMTRQTFWHRIKLYALRAGI 247

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HT+RH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + +++ +
Sbjct: 248 VTHISPHTMRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKAR----LSQLHSE 303

Query: 317 THPS 320
            HP 
Sbjct: 304 HHPR 307


>gi|92115127|ref|YP_575055.1| tyrosine recombinase XerD subunit [Chromohalobacter salexigens DSM
           3043]
 gi|91798217|gb|ABE60356.1| tyrosine recombinase XerD subunit [Chromohalobacter salexigens DSM
           3043]
          Length = 295

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 96/307 (31%), Positives = 145/307 (47%), Gaps = 17/307 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+ R  +L  L +ERGLS+ TL +Y  D   +L  LA      +            +  F
Sbjct: 4   LEWRDAFLDGLWLERGLSQHTLAAYRRDLDAWLAHLAARGACLMAP------DEQALETF 57

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++ RR +    RS+ R LS ++ F ++       +   + + R  +    LP  L+E + 
Sbjct: 58  LAARR-EHYHPRSVARLLSCLRRFYRWALAEGHVSVDPLADARAPRAVTKLPDTLDEAEV 116

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+             +  R+  +L +LYGCGLR+SE + LT   +   Q  LR+ GKG
Sbjct: 117 ERLL-----AAPDVELPLGLRDRTMLEVLYGCGLRVSELVGLTVDAVNLRQGVLRVLGKG 171

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           DK R+VPL       +  Y      DL  +  + PLF G     +    F   I++    
Sbjct: 172 DKERLVPLGEEATAWLARYLRQGRGDLMQDPTRPPLFPGRHDGFMTRQTFWHRIKRHAVS 231

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    + HTLRH+FATHLL++G +LR +Q +LGH  LSTTQIYT V        +  +
Sbjct: 232 AGIDKPLSPHTLRHAFATHLLNHGANLRVVQMLLGHSDLSTTQIYTQVAQAR----LEAL 287

Query: 314 YDQTHPS 320
           + Q HP 
Sbjct: 288 HAQHHPR 294


>gi|284048544|ref|YP_003398883.1| tyrosine recombinase XerD [Acidaminococcus fermentans DSM 20731]
 gi|283952765|gb|ADB47568.1| tyrosine recombinase XerD [Acidaminococcus fermentans DSM 20731]
          Length = 301

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 87/310 (28%), Positives = 146/310 (47%), Gaps = 20/310 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L KE   +L+ L +E GL+  T +SY  D R F  ++          + +  +   +I A
Sbjct: 10  LEKEINLFLEYLTVELGLAYNTRESYGRDLRLFAGWIK---------KPLEDVKREDILA 60

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++   +  +    S  R L+ +K+F +++       E     +    +   LP+ ++ ++
Sbjct: 61  YMRMLKVHQYAPTSASRKLAALKAFFRFMTAEGFLEEDPSEVVEAGTRGVVLPKVMSLEE 120

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L           T+    R+  +L ++Y  G+R+SE LSL   ++  +   +   GK
Sbjct: 121 VKQLF-----SAPDLTQPEGFRDRTMLEVMYATGMRVSELLSLKRASVNLETRYVIAYGK 175

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G K R++PL     + + +Y       F  N      LF  IRG  +    F + IR   
Sbjct: 176 GAKERLIPLGQYAIQYLKKYLAQVRPLFVKNGKDDDSLFLTIRGTGMTRQRFWQIIRAYG 235

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              GL    T H LRHSFATH+L NG DLR++Q +LGH  +STTQIYT++ +      + 
Sbjct: 236 VKAGLQKPLTPHILRHSFATHMLDNGADLRTVQELLGHADISTTQIYTHLTNNR----LK 291

Query: 312 EIYDQTHPSI 321
           +++D+THP  
Sbjct: 292 KVFDKTHPRA 301


>gi|225021521|ref|ZP_03710713.1| hypothetical protein CORMATOL_01542 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945903|gb|EEG27112.1| hypothetical protein CORMATOL_01542 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 305

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 86/309 (27%), Positives = 146/309 (47%), Gaps = 18/309 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            WL +L++E+G S  TL +Y  D  +++ +L       + +  + Q++ +++ A++++ R
Sbjct: 8   AWLTHLKVEKGYSSNTLSNYRRDLYRYVTWL-----HAVGVTDLNQVTTSQVEAYVTELR 62

Query: 80  T-------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
                   + +   S  R+L   +   K+     + T     ++        LP  L   
Sbjct: 63  RGDPDRNIKPLAVSSAARALIVARGLHKFALLEGLVTTDVAADVSPPATGRHLPDVLTIA 122

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L+D   + T      ID R+ A++ LLYG G RISE  +LT  N  D+   LRI G
Sbjct: 123 EITQLIDA--IPTDDTASPIDLRDRALIELLYGTGARISEITALTVDNFHDNDGMLRITG 180

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG+K R+VP+      A+ +Y               L    RG+ L+       ++    
Sbjct: 181 KGNKQRLVPVGSQAMAAVDQYLVRARPVFATGASHALLLNTRGRTLSRQSAWAVLKTAAA 240

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +    + HTLRHSFATHLL  G   R +Q +LGH  ++TTQIYT+V+++N    + +
Sbjct: 241 RAHITKDISPHTLRHSFATHLLEGGAGERVVQELLGHSSVTTTQIYTHVSAEN----LRQ 296

Query: 313 IYDQTHPSI 321
            +  +HP  
Sbjct: 297 AWVMSHPRA 305


>gi|213965974|ref|ZP_03394164.1| tyrosine recombinase XerD [Corynebacterium amycolatum SK46]
 gi|213951388|gb|EEB62780.1| tyrosine recombinase XerD [Corynebacterium amycolatum SK46]
          Length = 312

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 83/311 (26%), Positives = 145/311 (46%), Gaps = 19/311 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            ++  L +E+GLS  TL SY+ D  ++  +L      +I    + Q++  ++  F++   
Sbjct: 10  AFVTYLAVEKGLSANTLASYKRDLEKYRTYL-----REIGRTELAQVTEQDVSEFLAYLA 64

Query: 80  TQK-------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
                     +   S+ RSLS ++SF K+              +   K+ +  P+AL+  
Sbjct: 65  RGDKSEGRPALAPTSVTRSLSAVRSFHKFAVGEGALDVDVAKRVAPPKQPSRYPKALSID 124

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L+++  +         D RN A++  LY  G R+SE   L   ++  + + + ++G
Sbjct: 125 EVTRLIES--IPDDGTAVVTDLRNRALVEFLYSTGARVSEVTGLDIDDVDRETNLVLLRG 182

Query: 193 KGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG K RIVP+      A+  +     P  +  N    LF    G+ L+       + +L 
Sbjct: 183 KGGKERIVPVGSPAMAALDAWLTRGRPSWVRANSGPALFINSLGRRLSRQSAGNTLAELG 242

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              GL +  + HTLRHSF THL+  G D+R +Q +LGH  ++TTQIYT + ++N    M 
Sbjct: 243 ERAGLKVKISPHTLRHSFGTHLIEGGADVRVVQELLGHASVTTTQIYTMITAEN----MR 298

Query: 312 EIYDQTHPSIT 322
            ++   HP   
Sbjct: 299 RVWAGAHPRAE 309


>gi|58583617|ref|YP_202633.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58428211|gb|AAW77248.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 347

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 92/328 (28%), Positives = 155/328 (47%), Gaps = 20/328 (6%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK----- 57
             + P I S ++      +L  L++ER +S  TL +Y  D    + +      E      
Sbjct: 32  TTSTPSIESADV-SSVDEFLTYLQVERQVSAHTLDAYRRDLAALVAWTGERNAEDGAQQT 90

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
            T     QL    +R F++    + +  +SL+R LS  +S+  +L K      S    +R
Sbjct: 91  ATPVDSAQLDSAHLRQFVAAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIAASPAAALR 150

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             K    LP+ L+  +A+ LV+            +  R+ A+L L Y  GLR+SE  +L 
Sbjct: 151 APKAQRKLPQVLDADEAVRLVEVP------TDAPLGLRDRALLELFYSSGLRLSELCALR 204

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
            +++  D   + + GKG K R+VP+      A+ ++      D   +    +F G  G  
Sbjct: 205 WRDLDLDSGLVMVLGKGSKQRLVPVGSHAIAALRQWR----RDSGASADAHVFPGRTGGA 260

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           ++    Q  I+QL    G+      H LRHSFA+H+L + GDLR +Q +LGH  ++TTQI
Sbjct: 261 ISQRAVQIRIKQLAVRQGMFKDVHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQI 320

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           YT+++ ++    + ++YD  HP   +K 
Sbjct: 321 YTHLDFQH----LAKVYDAAHPRARRKK 344


>gi|68248917|ref|YP_248029.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           86-028NP]
 gi|68057116|gb|AAX87369.1| Site-specific recombinase XerD [Haemophilus influenzae 86-028NP]
          Length = 297

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 151/308 (49%), Gaps = 17/308 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L     +L    IE+GLS+ T+QSY  D      +L           ++  L   +++ F
Sbjct: 4   LALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWL------DKNDLSLETLDAVDLQGF 57

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + +R  +     S  R LS ++   +YL + K   +     + + K  + LP+ L E+Q 
Sbjct: 58  LGERLEKGYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQV 117

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
                + LL+T      ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG
Sbjct: 118 -----SDLLNTPDVKVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKG 172

Query: 195 DKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K RIVP+       + ++     P  LN      +F   R + +    F   ++     
Sbjct: 173 NKERIVPMGEEAAYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAIL 232

Query: 254 LGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             +     + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  
Sbjct: 233 ADIDADALSPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER----LKR 288

Query: 313 IYDQTHPS 320
           ++++ HP 
Sbjct: 289 LHERFHPR 296


>gi|295691144|ref|YP_003594837.1| integrase family protein [Caulobacter segnis ATCC 21756]
 gi|295433047|gb|ADG12219.1| integrase family protein [Caulobacter segnis ATCC 21756]
          Length = 309

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 119/308 (38%), Positives = 175/308 (56%), Gaps = 10/308 (3%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +    WL +L +ER  S  T+++Y  +   +L FL  +  E +++  + ++S  ++R ++
Sbjct: 10  QALAAWLDHLTLERRASPRTVRAYGDNVLAYLNFLENHRGEALSVAALGEISAADLRGYL 69

Query: 76  SKRR--TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           + RR     +  RS+ ++LS I++F +Y+ +R     + I  +R  +    LPR ++E Q
Sbjct: 70  AFRRQGENALAPRSISQALSSIRAFHRYVDQRHGVANAAIGLVRGPRLKIGLPRPVSEDQ 129

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           A  L+      T  E  W  AR+ A+L LL+GCGLRISEALSLT  ++    + LRI GK
Sbjct: 130 ARDLIFEASGDTERE-PWETARDEAVLTLLWGCGLRISEALSLTWSDVPLGAA-LRITGK 187

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K RI P+L +VR+A+  Y D  PF L  +   PLFR  RG PL+P   Q  ++ LR  
Sbjct: 188 GGKTRIAPVLDAVREAVAVYADELPFVLGPDE--PLFRAKRGGPLSPRHVQALVQTLRGR 245

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           LGL    T H  RH+FATHLL  G DLR+IQ +LGH  LSTTQ YT V++      ++  
Sbjct: 246 LGLSDRVTPHAFRHAFATHLLGAGADLRTIQELLGHASLSTTQRYTQVDAA----GLLAA 301

Query: 314 YDQTHPSI 321
           Y   HP  
Sbjct: 302 YQAAHPKA 309


>gi|240949807|ref|ZP_04754136.1| site-specific tyrosine recombinase XerD [Actinobacillus minor
           NM305]
 gi|240295724|gb|EER46419.1| site-specific tyrosine recombinase XerD [Actinobacillus minor
           NM305]
          Length = 297

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 95/311 (30%), Positives = 150/311 (48%), Gaps = 18/311 (5%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
             L    + +L  L  E GLS  T+ SY  D   F  +L          +    + +  +
Sbjct: 2   PSLDPIVEQFLDTLWQEHGLSDNTVSSYRLDLSLFTEWLDE-------PRAFLTVDHHTL 54

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           + F+  R  Q     S  R LS ++ F ++L       +     + + +K + LP+ LNE
Sbjct: 55  QEFLGYRFDQGYKASSSLRMLSCLRKFFRFLYLENYRKDDPTAMLISPRKPSRLPKTLNE 114

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           +Q + L++       +    I+ R+ A+L LLY  GLR++E +SLT +N+   Q  +RI 
Sbjct: 115 EQVMDLLEC-----PNPLDPIELRDKAMLELLYATGLRVTELISLTTENLSLRQGVVRII 169

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           GKGDK R+VPL       I E++       LN      +F   RG+ +    F   I+  
Sbjct: 170 GKGDKERLVPLGEEASYWIQEFFQYGRGILLNNEPSNVVFPSKRGQMMTRQTFWHRIKHY 229

Query: 251 RRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
               G+     + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V        
Sbjct: 230 AVLAGIDSEKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR---- 285

Query: 310 MMEIYDQTHPS 320
           +  ++++ HP 
Sbjct: 286 LKSLHEKYHPR 296


>gi|145640252|ref|ZP_01795836.1| tyrosine recombinase [Haemophilus influenzae R3021]
 gi|145274838|gb|EDK14700.1| tyrosine recombinase [Haemophilus influenzae 22.4-21]
          Length = 297

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 151/308 (49%), Gaps = 17/308 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L     +L    IE+GLS+ T+QSY  D      +L           ++  L   +++ F
Sbjct: 4   LALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWL------DKNDLSLETLDSVDLQGF 57

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + +R  +     S  R LS ++   +YL + K   +     + + K  + LP+ L E+Q 
Sbjct: 58  LGERLEKGYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQV 117

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
                + LL+T      ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG
Sbjct: 118 -----SDLLNTPDVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKG 172

Query: 195 DKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K RIVP+       + ++     P  LN      +F   R + +    F   ++     
Sbjct: 173 NKERIVPMGEEAAYWVRQFMLYGRPVLLNGQSSDVVFPSQRTQQMTRQTFWHRVKHYAIL 232

Query: 254 LGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             +     + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  
Sbjct: 233 ADIDADALSPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER----LKR 288

Query: 313 IYDQTHPS 320
           ++++ HP 
Sbjct: 289 LHERFHPR 296


>gi|325068736|ref|ZP_08127409.1| tyrosine recombinase XerD [Actinomyces oris K20]
          Length = 307

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 94/317 (29%), Positives = 153/317 (48%), Gaps = 27/317 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L +L +ERGLS  TL +YE D  ++L +L         I   +++S  ++  F+   
Sbjct: 2   RGYLAHLRVERGLSPHTLSAYERDLGRYLRYL-----RSAGISAPQEVSRNDVAGFLEVL 56

Query: 79  RT-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           RT     + +   S  R+++ ++ + K+L     T+E     +R  +    LP+AL   +
Sbjct: 57  RTGSDGARPLASSSASRTVTAVRGWHKFLLAEGTTSEDPSATVRPPQPGRRLPKALGVDE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++        +   +  R+ A+L +LY  G RISEA+ L   ++  D   LR+ GK
Sbjct: 117 VRRLLE----AAGVDDSPVSLRDRALLEVLYATGARISEAVGLVVDDLDTDSKLLRLFGK 172

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLR 251
           G K R+VP+     +A+  Y       L    +    +F    G+PL+       ++Q  
Sbjct: 173 GRKERVVPMGAYAWEALDAYLVRGRPVLAEKGRGVPQVFLNTLGRPLSRQSAWAVLQQAA 232

Query: 252 RYLGL-------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              GL           + HTLRHSFATHLL+ G D+R +Q +LGH  ++TTQIYT V   
Sbjct: 233 ERAGLIGTDGADERRISPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTKVT-- 290

Query: 305 NGGDWMMEIYDQTHPSI 321
              D + E+Y  +HP  
Sbjct: 291 --VDHLREVYATSHPRA 305


>gi|187476668|ref|YP_784691.1| site-specific tyrosine recombinase XerC [Bordetella avium 197N]
 gi|115421254|emb|CAJ47759.1| tyrosine recombinase [Bordetella avium 197N]
          Length = 325

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 98/331 (29%), Positives = 161/331 (48%), Gaps = 28/331 (8%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L    ++WLQ+L+ +R  S  TL +Y  D                    ++ LS + IR 
Sbjct: 4   LAPPLEDWLQHLQTQRRYSSHTLAAYRHDLESLAALATQAG------LALQDLSVSHIRQ 57

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            I++   Q +G RSL R L+  + F ++         + +  +R  K   +LP+AL+  Q
Sbjct: 58  QIARLHAQGLGPRSLARRLAAWRGFYQWWAPHIGLARNPVAGVRAPKAPRALPKALSVDQ 117

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI------------ 181
           A  ++D+     S  T  +  R+ AI  LLY  GLR+SE +SL                 
Sbjct: 118 AQAMLDHAPAQLS--TDPVSLRDHAISELLYSSGLRLSELVSLDTHYHRHTGSEEPAGWL 175

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN----IQLPLFRGIRGKP 237
              ++ + + GKG K RIVP+  +   A+ ++    P  L+          LF G RG  
Sbjct: 176 NRAEAEVVVLGKGGKRRIVPVGSAALAALDKWLQARPTLLSAATPAADSYALFLGARGAR 235

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           ++P V Q  + +L +  G+P     H LRHSFA+H+L +  DLR++Q +LGH  ++TTQ+
Sbjct: 236 ISPRVVQLQLARLAQQAGVPAHVHPHVLRHSFASHVLQSAQDLRAVQELLGHANIATTQV 295

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           YT ++ ++    + ++YDQ HP   +K + N
Sbjct: 296 YTRLDFQH----LAKVYDQAHPRANRKPEDN 322


>gi|323141913|ref|ZP_08076774.1| tyrosine recombinase XerD [Phascolarctobacterium sp. YIT 12067]
 gi|322413660|gb|EFY04518.1| tyrosine recombinase XerD [Phascolarctobacterium sp. YIT 12067]
          Length = 297

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 150/304 (49%), Gaps = 17/304 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + + L +E GL+K T  +Y  D R  +  L    +E+     + Q+S  ++ A++ + + 
Sbjct: 8   FQEYLTVELGLAKNTQLAYMRDLRLLMKSLQLKADEE-----LLQVSRQQLIAYLVRLKQ 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     ++ R L+ IK+F ++L   +    +    +    +   LP+ L+ ++   L+D 
Sbjct: 63  EGRAASTVARKLASIKAFYRFLTAERYIRRNPAEVLEAASRGLHLPKVLSVQEVERLLDE 122

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L T         R+  +L LLY  G+R+SE +++  +N+      + + GKG K R++
Sbjct: 123 PNLGTLD-----GYRDKTMLELLYATGMRVSELVNVPVKNVDMKMQYVIVMGKGSKERML 177

Query: 201 PLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           PL  +    +  Y  +    L     +    LF    G P+    F   I    +  G+ 
Sbjct: 178 PLGRTALHYLEHYLSVVRPQLLHGKPDTAAELFVTGWGGPMTRERFYEIIVAYGKSAGIS 237

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T H LRHSFATHLL+NG DLR +Q +LGH  +STTQIYT+++ +     + E+YD+T
Sbjct: 238 KRVTPHMLRHSFATHLLNNGTDLRIVQELLGHADISTTQIYTHLDVER----LREVYDKT 293

Query: 318 HPSI 321
           HP  
Sbjct: 294 HPRA 297


>gi|325103648|ref|YP_004273302.1| tyrosine recombinase XerD [Pedobacter saltans DSM 12145]
 gi|324972496|gb|ADY51480.1| tyrosine recombinase XerD [Pedobacter saltans DSM 12145]
          Length = 299

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 90/306 (29%), Positives = 158/306 (51%), Gaps = 15/306 (4%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E++ +   L++ER LS  ++ +Y  D  + + FL+  +      +++ +++  ++R FI 
Sbjct: 6   EKKGFESYLKLERSLSPNSVNAYVNDVDKLVQFLSVQS----NPKSLLKVNTQDLRNFIK 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                 +   +  R +SGIKSF KYL    +        + + K    LP  L   +  T
Sbjct: 62  WINEFGLIASTQSRIISGIKSFYKYLLLEDLIEHDPADIIESPKIRRKLPEVLTVHEINT 121

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           ++D   L     +K  + RN A+L +LY  GLR+SE  +L   ++  +   +++ GKG+K
Sbjct: 122 MLDGFDL-----SKPENIRNKAMLEILYSSGLRVSELTNLKLSDLYRELEFVKVVGKGNK 176

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            R+VP+  S  K +  Y +     LN+    +  +F   RG  L+  +    I+ L   +
Sbjct: 177 ERLVPVGSSALKHLEIYLENIRNKLNIQKGNEDIIFLNKRGSKLSRVMVFMIIKDLATAV 236

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+  + + HT RHSFATHL+  G DLR+IQ +LGH  ++TT+IYT+++     D++ +  
Sbjct: 237 GIKKNISPHTFRHSFATHLIEGGADLRAIQEMLGHESITTTEIYTHLD----RDFLKQTI 292

Query: 315 DQTHPS 320
            Q HP 
Sbjct: 293 TQFHPR 298


>gi|262274923|ref|ZP_06052734.1| site-specific recombinase XerD [Grimontia hollisae CIP 101886]
 gi|262221486|gb|EEY72800.1| site-specific recombinase XerD [Grimontia hollisae CIP 101886]
          Length = 298

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 90/306 (29%), Positives = 150/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + +ERGLS+ TL SY  D  +   +L    E  +T      ++ ++++ +   
Sbjct: 8   VEQFLDAMWMERGLSENTLASYRNDLTKLCQWLDKDGELLVT------VACSKLQEYQHW 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    S  R LS ++   +YL + K+  +     + + K    LP+ L+E Q   L
Sbjct: 62  LFDLNYKQSSRARMLSAMRRLFQYLYREKLREDDPTATLISPKLPKRLPKDLSEAQVEAL 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D       +    I+ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG K 
Sbjct: 122 LD-----APNVEDVIELRDKAMLELLYATGLRVTELISLTTENVSLRQGVVRVIGKGGKE 176

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +  + +  Y     P  L        F   R + +    F   I+      G+
Sbjct: 177 RLVPMGEAAIEWLEHYMAHSRPALLGEQSSDVFFPSRRARMMTRQTFWHRIKFYAALAGI 236

Query: 257 PLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 237 DGEMLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQ 292

Query: 316 QTHPSI 321
           + HP  
Sbjct: 293 EHHPRA 298


>gi|329297033|ref|ZP_08254369.1| site-specific tyrosine recombinase XerC [Plautia stali symbiont]
          Length = 303

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 79/313 (25%), Positives = 150/313 (47%), Gaps = 17/313 (5%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           +  LL   + +L+ L++ER LS LT ++Y+   +  +        + + I    QL   +
Sbjct: 4   ASPLLPAVEGFLRYLKVERQLSPLTQKNYQRQLQALIAMA-----DDMHITAWSQLEPAQ 58

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +R+  ++ R   +G  SL   +S ++SFL +   + + + +    +   + +  LP+ ++
Sbjct: 59  VRSLAARSRRGGLGASSLALRMSALRSFLDWQVSQGMLSANPAKGIATPRNARHLPKNMD 118

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             +         L        +  R+ A+L  +YG GLR++E + +  +++  +   + +
Sbjct: 119 VDEVSQ------LLDIDLDDPLAVRDRAMLETMYGGGLRLAELVGIDCRHLDLESGEVWV 172

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +GKG K R VP+  +    +  +  L            +F   RG  ++    Q+   + 
Sbjct: 173 RGKGSKERRVPIGGTAVTWLQHWLPLRN--SFAPQDDAVFVSTRGSRISARNVQKRFAEW 230

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+      H LRHSFATHLL + GDLR++Q +LGH  LSTTQIYT+++ ++    +
Sbjct: 231 GIKQGVASHIHPHKLRHSFATHLLESSGDLRAVQELLGHVNLSTTQIYTHLDFQH----L 286

Query: 311 MEIYDQTHPSITQ 323
             +YD  HP   +
Sbjct: 287 ASVYDAAHPRAKR 299


>gi|329962342|ref|ZP_08300347.1| tyrosine recombinase XerD [Bacteroides fluxus YIT 12057]
 gi|328530203|gb|EGF57084.1| tyrosine recombinase XerD [Bacteroides fluxus YIT 12057]
          Length = 317

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 94/312 (30%), Positives = 153/312 (49%), Gaps = 17/312 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + Q L++E+ LS  TL +Y  D  + L FL     EKI    I  ++  +++ F + 
Sbjct: 17  IRKYNQYLKLEKSLSPNTLDAYRTDLEKLLRFLEA---EKI---DILAVTLDDLQRFTAG 70

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I  RS  R LSGIKSF  +L             +   K    LP  L  ++   +
Sbjct: 71  LHDIGIHPRSQARILSGIKSFFHFLVLADYLEGDPSELLEGPKIGFKLPEVLTVEEIDKI 130

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +  V L T+        RN AIL  LY CGLR+SE  +L   ++  D+  ++++GKG K 
Sbjct: 131 ISTVDLSTNE-----GQRNRAILETLYSCGLRVSELCNLKISDLYFDEGFIKVEGKGSKQ 185

Query: 198 RIVPLLPSVRKAILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R+VP+ P   K I  ++      + +  + +  +F    G  ++  +    I++L    G
Sbjct: 186 RLVPISPRAIKEIKNWFADRNEKWKIKKDFEDYVFLARWGNGISRIMIFHLIKELAEKAG 245

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++       ++E   
Sbjct: 246 ITKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIE--- 302

Query: 316 QTHPSITQKDKK 327
             HP   +  K+
Sbjct: 303 -HHPRNIKYRKE 313


>gi|304394248|ref|ZP_07376171.1| tyrosine recombinase XerC [Ahrensia sp. R2A130]
 gi|303293688|gb|EFL88065.1| tyrosine recombinase XerC [Ahrensia sp. R2A130]
          Length = 342

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 132/314 (42%), Positives = 193/314 (61%), Gaps = 16/314 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K R+ WL+ +E ER ++  T+++Y+ D +QF +FL  Y      ++    L    +RA++
Sbjct: 37  KARERWLRWMETERRMAARTMEAYDRDLQQFCLFLTDYHGRPAKVKDFADLRPISLRAYL 96

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++RR    G R+L R L+GI SF+++L+++ + + + I  MR  ++  +LP+ +   QAL
Sbjct: 97  AQRRNTGAGPRTLARGLAGIGSFIRHLERQGLASSAGITAMRAPRQPRTLPKPVRADQAL 156

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--------T 187
            L +       HE  WI AR++A++ LLYGCGLR+ EAL LTP ++             T
Sbjct: 157 RLTETS--EQLHEEPWIAARDAALMTLLYGCGLRLGEALGLTPFDLGITNMAAPTVTTDT 214

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           LRI GKG K R+VPLLP V +AI  Y  LCP  +  +   P+FRG+RG P+ P VFQR +
Sbjct: 215 LRITGKGGKTRLVPLLPVVGEAIASYLRLCPHVIEADA--PIFRGMRGGPVQPAVFQRAM 272

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            ++R  LGLP + T H LRHSFATHLL NGGDLR+IQ +LGH  LSTTQ YT V++++  
Sbjct: 273 ARMRGALGLPSTATPHALRHSFATHLLGNGGDLRTIQELLGHASLSTTQKYTAVDTES-- 330

Query: 308 DWMMEIYDQTHPSI 321
             +M  +   HP  
Sbjct: 331 --LMASWAAAHPRA 342


>gi|149372788|ref|ZP_01891809.1| site-specific recombinase [unidentified eubacterium SCB49]
 gi|149354485|gb|EDM43050.1| site-specific recombinase [unidentified eubacterium SCB49]
          Length = 299

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 98/302 (32%), Positives = 153/302 (50%), Gaps = 16/302 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   L IERGLS  T+ +Y  D  +   +L    E ++ I  I  +S   I+ FI     
Sbjct: 10  YKDYLRIERGLSDNTIANYALDILKLTKWLE---ENEMAISPI-DISEKTIQEFI-YEIA 64

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   S  R +SG+K F  YL   +  T + +  M + K    LP  L+EK+   L+  
Sbjct: 65  KTVAPSSQSRVISGLKGFFNYLVFEEYRTTNPLELMESPKIGRKLPDTLSEKEIDLLISE 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           + L +    +     N AIL  LYGCGLR+SE ++L   ++  ++  +++ GKGDK R V
Sbjct: 125 IDLSSPQGER-----NRAILETLYGCGLRVSEIINLKISDLFFEEGFIKVTGKGDKERFV 179

Query: 201 PLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           P+  +  K I  Y +       +       LF   RGK L   +    I++L    G+  
Sbjct: 180 PIGDNTIKFINIYRNEIRVHEPIKPEASDTLFLNRRGKGLTRAMIFTIIKRLLEKTGIQK 239

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + + HT RHSFATHLL  G DLR+IQ +LGH  ++TT+IYT+++  +    + E+  + H
Sbjct: 240 NVSPHTFRHSFATHLLERGADLRAIQQMLGHESITTTEIYTHIDKSH----LTEVIHKFH 295

Query: 319 PS 320
           P 
Sbjct: 296 PR 297


>gi|152988673|ref|YP_001351339.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa
           PA7]
 gi|166918894|sp|A6VE54|XERC_PSEA7 RecName: Full=Tyrosine recombinase xerC
 gi|150963831|gb|ABR85856.1| tyrosine recombinase XerC [Pseudomonas aeruginosa PA7]
          Length = 303

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 96/311 (30%), Positives = 154/311 (49%), Gaps = 17/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  +   +L++L  ER +S  TL  Y+ D  + L        EK  +     L    +R 
Sbjct: 1   MRADLDAFLEHLRSERQVSAHTLDGYQRDLLKILALA-----EKAGLTDWNALDTRTLRT 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+++   Q    RSL R LS  + F +YL +           +   K    LPR L+  +
Sbjct: 56  FVARLHQQGQSSRSLARLLSATRGFYQYLLREGRCRHDPANGLSAPKSPRKLPRTLDADR 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           AL L+D      + E  +I  R+ A+L L Y  GLR+SE + L  + +   +  +R++GK
Sbjct: 116 ALQLLDG-----AVEDDFIARRDQALLELFYSSGLRLSELVGLDLEWLDLKEGLVRVRGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K+R +P+  + R+A+  +  L            +F G  GK L P   Q  +RQ    
Sbjct: 171 GNKVRELPVGKAARQALEAWLPLR--AQATPEDGAVFIGRGGKRLTPRAVQLRVRQAGVR 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRHSFA+HLL + GDLR++Q +LGH  ++TTQIYT+++ ++    +  +
Sbjct: 229 -ELGQHLHPHMLRHSFASHLLESSGDLRAVQELLGHADIATTQIYTHLDFQH----LASV 283

Query: 314 YDQTHPSITQK 324
           YD+ HP   +K
Sbjct: 284 YDRAHPRAKRK 294


>gi|163853685|ref|YP_001641728.1| tyrosine recombinase XerC [Methylobacterium extorquens PA1]
 gi|240141109|ref|YP_002965589.1| ptyrosine recombinase xerC, integrase/recombinase Ripx (xerC)
           [Methylobacterium extorquens AM1]
 gi|163665290|gb|ABY32657.1| tyrosine recombinase XerC [Methylobacterium extorquens PA1]
 gi|240011086|gb|ACS42312.1| ptyrosine recombinase xerC, integrase/recombinase Ripx (xerC)
           [Methylobacterium extorquens AM1]
          Length = 365

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 127/314 (40%), Positives = 184/314 (58%), Gaps = 8/314 (2%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
              L    + W + L  ER ++  T+++YE D RQFLI  A  +    TI  +  L   +
Sbjct: 20  DAALRAAMRGWREALARERRMAANTVEAYERDLRQFLIHRAARSG-TPTIAGLIALKPRD 78

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +RAF++ RR + IG RSL R L+G++SF ++L++    + + +  +R+ K    LPR L 
Sbjct: 79  LRAFMAARRAEGIGGRSLMRMLAGLRSFARFLEREGHGSVAALGAVRSPKVERRLPRPLP 138

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLR 189
              AL +             W+ AR++A++ LLYG GLRISEAL LT ++  M     +R
Sbjct: 139 ISAALAMTAPETRPDDDRAPWVLARDAAVIALLYGSGLRISEALGLTARDAPMPGIDEVR 198

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG K+R VP+LP+V +A+  Y  LCP  L  + + PLF G++G PL+P V Q  +  
Sbjct: 199 VTGKGGKVRAVPVLPAVAEAVAAYLSLCPHPL--DPEGPLFVGVKGGPLSPRVVQYAVSA 256

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           LR  LGLP S T H LRHSFATHLL+  G+LR+IQ +LGH  LSTTQIYT V++      
Sbjct: 257 LRGALGLPESATPHALRHSFATHLLARRGELRAIQELLGHASLSTTQIYTKVDAAR---- 312

Query: 310 MMEIYDQTHPSITQ 323
           +M  ++  HP   +
Sbjct: 313 LMSAFEDAHPRARR 326


>gi|167756895|ref|ZP_02429022.1| hypothetical protein CLORAM_02444 [Clostridium ramosum DSM 1402]
 gi|167703070|gb|EDS17649.1| hypothetical protein CLORAM_02444 [Clostridium ramosum DSM 1402]
          Length = 302

 Score =  259 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 91/313 (29%), Positives = 155/313 (49%), Gaps = 16/313 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +   L K  + +L  L+ +R  +  T++SY+     F  FL      + +I     +SY 
Sbjct: 1   MKTTLDKYFRQYLDYLQYQRHYADKTIESYKRQIDHFKQFLI-----EESIDDYNDVSYA 55

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R +++K   + +   ++   LS ++SF  YL K ++  ++  L + + K +   P  L
Sbjct: 56  MLRGYLTKLYEKNLSKTTINHKLSALRSFFNYLLKEELINDNPFLLIESQKVAKRNPDFL 115

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
             ++ L L+D++          +  RN A++ L+Y  GLR SE ++L   NI  +Q  L 
Sbjct: 116 FPEEILGLLDSI-----ETKDDLGIRNKAMMELMYASGLRCSEVVNLQLSNIDFNQMVLF 170

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYI 247
           I GKG+K R VP      + +++Y      +L         +F    G PL     +  +
Sbjct: 171 IHGKGNKDRYVPFHDYAGEWLIKYIQEARENLMIKNEGHNFVFVNKFGNPLTNRGVENIV 230

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            ++ R          HT+RHSFATHLL+ G D+R++Q +LGH  LSTTQIYT+++     
Sbjct: 231 DRIMRLYDSTKKIHPHTIRHSFATHLLNAGADIRTVQELLGHENLSTTQIYTHIS----R 286

Query: 308 DWMMEIYDQTHPS 320
           D + E+Y + HP 
Sbjct: 287 DHLKEVYLKAHPR 299


>gi|16272264|ref|NP_438476.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae Rd
           KW20]
 gi|260581222|ref|ZP_05849041.1| tyrosine recombinase XerD [Haemophilus influenzae RdAW]
 gi|1175025|sp|P44630|XERD_HAEIN RecName: Full=Tyrosine recombinase xerD
 gi|1573278|gb|AAC21974.1| integrase/recombinase (xerD) [Haemophilus influenzae Rd KW20]
 gi|260092147|gb|EEW76091.1| tyrosine recombinase XerD [Haemophilus influenzae RdAW]
          Length = 297

 Score =  259 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 152/308 (49%), Gaps = 17/308 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L     +L    IE+GLS+ T+QSY  D      +L           ++  L   +++ F
Sbjct: 4   LALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWL------DKNDLSLETLDAVDLQGF 57

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + +R  +     S  R LS ++   +YL + K   +     + + K  + LP+ L E+Q 
Sbjct: 58  LGERLEKGYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQV 117

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
                + LL+T +    ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG
Sbjct: 118 -----SDLLNTPNVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKG 172

Query: 195 DKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K RIVP+       + ++     P  LN      +F   R + +    F   ++     
Sbjct: 173 NKERIVPMGEEAAYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAIL 232

Query: 254 LGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             +     + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  
Sbjct: 233 ADIDADALSPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER----LKR 288

Query: 313 IYDQTHPS 320
           ++++ HP 
Sbjct: 289 LHERFHPR 296


>gi|163803624|ref|ZP_02197489.1| tyrosine recombinase [Vibrio sp. AND4]
 gi|159172572|gb|EDP57432.1| tyrosine recombinase [Vibrio sp. AND4]
          Length = 313

 Score =  259 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 83/312 (26%), Positives = 154/312 (49%), Gaps = 16/312 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L K  Q + + L  E+GLS  T ++Y+         L      ++ ++   Q+  + +R 
Sbjct: 13  LQKPLQRFYEFLRSEKGLSLHTQRNYKQQLETMAQHLV-----EMGLKDWSQVDASWVRQ 67

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
              K   + +   S+   LS ++SF  +L  R   + +    +   +K   LP+ L+  +
Sbjct: 68  LAGKGMREGMKASSVATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDE 127

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++       +E   +  R+ A++ L+YG GLR++E +S+  ++I      LR+ GK
Sbjct: 128 VSQLLEV------NEGDALAVRDRAMMELMYGAGLRLAELVSVDMRDIQLRSGELRVIGK 181

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GDK R VP      + + ++  +   D+    +  LF    G  ++    Q+ + Q  + 
Sbjct: 182 GDKERKVPFSGMATEWVGKWLRVR-GDIAAPGEPALFVSKLGTRISHRSVQKRMAQWGQK 240

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ ++    + + 
Sbjct: 241 QSVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQH----LAQA 296

Query: 314 YDQTHPSITQKD 325
           YDQ HP   +K+
Sbjct: 297 YDQAHPRARKKN 308


>gi|237807746|ref|YP_002892186.1| tyrosine recombinase XerD [Tolumonas auensis DSM 9187]
 gi|237500007|gb|ACQ92600.1| tyrosine recombinase XerD [Tolumonas auensis DSM 9187]
          Length = 297

 Score =  259 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 147/305 (48%), Gaps = 16/305 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L ++RGLS  T+ SY  D  +   +L       +T+ T+       + A+++ 
Sbjct: 8   IEQFLDMLWLDRGLSDNTISSYRTDLYKLNDWLDSKASSYLTLDTL------LLHAYLAW 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  Q     S  R LS ++ F ++L + ++  +   + + + K    LP+ ++E+Q   L
Sbjct: 62  RIDQGFKATSTARLLSALRRFYQFLIREQLRADDPTVALDSPKLPLRLPKDISEEQVEAL 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L        I+ R+ A+L LLY  GLR+SE + L    +  + + +R+ GKG+K 
Sbjct: 122 -----LAEPDVQDPIELRDKAMLELLYATGLRVSELVGLQMHQLASNMAYVRVTGKGNKD 176

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP     +  I  +        L+      LF   R + +    F   I+       +
Sbjct: 177 RLVPTGEEAQYWIQRFMREGRMTLLHEQASDVLFPSNRSQQMTRQTFWHRIKLYAVRANI 236

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ +
Sbjct: 237 TSDLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQAR----LQELHQE 292

Query: 317 THPSI 321
            HP  
Sbjct: 293 HHPRA 297


>gi|251787836|ref|YP_003002557.1| site-specific tyrosine recombinase XerC [Dickeya zeae Ech1591]
 gi|247536457|gb|ACT05078.1| tyrosine recombinase XerC [Dickeya zeae Ech1591]
          Length = 302

 Score =  259 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 147/314 (46%), Gaps = 17/314 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
               L    + +L+ L +ER LS LT +SY    +  +  L+        I   + L   
Sbjct: 3   PDSPLSAPAEAFLRYLRVERQLSPLTQRSYAHQLQVIIEMLSSS-----GIAEWQALDAA 57

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +RA +++ +   +   SL + LS ++S L +L  R     +    +   K    LP+ +
Sbjct: 58  GVRAVVARSKRDGLNAASLAQRLSALRSLLDWLVGRGELKANPARGVPAPKAGRHLPKNM 117

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  +   L++  L         +  R+ A+L ++YG GLR++E + L   +I  +   + 
Sbjct: 118 DVDEMNRLLEIDL------NDPLAVRDRAMLEVMYGAGLRLAELVGLDCGHINLESGEVW 171

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG K R +P+  +    +  +  +   ++       +F    GK ++    Q+   +
Sbjct: 172 VMGKGSKERRLPVGATAVTWLTHWLAIR--EIYAPEDDAVFISSLGKRISMRNVQKRFAE 229

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+      H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++    
Sbjct: 230 WGVKQGVNSHVNPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH---- 285

Query: 310 MMEIYDQTHPSITQ 323
           +  +YD  HP   +
Sbjct: 286 LASVYDAAHPRAKR 299


>gi|332286571|ref|YP_004418482.1| site-specific tyrosine recombinase XerC [Pusillimonas sp. T7-7]
 gi|330430524|gb|AEC21858.1| site-specific tyrosine recombinase XerC [Pusillimonas sp. T7-7]
          Length = 316

 Score =  259 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 97/328 (29%), Positives = 155/328 (47%), Gaps = 29/328 (8%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
             L    + WL +L+  R  S  TL  Y  D    +   A           +   + + I
Sbjct: 2   HALPAPMEQWLAHLQGHRRYSIHTLSGYRQDLHHLIQCHADLK--------LDHCTESHI 53

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           R  +++   Q +  RSL R+L+  + F ++   +     + +  +R  K   SLP+AL+ 
Sbjct: 54  RQAVARLHGQGLQPRSLARALAAWRGFFQWWAPQAGMESNPVAGVRAPKIPRSLPKALSV 113

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP-----------QN 180
           +Q   L+D   L        ID R+ A+  +LY  GLR++E +SL               
Sbjct: 114 EQTQVLLDRPQLPAPD--TAIDCRDQAMFEVLYSSGLRLAELVSLDWRYARTGGYESQSW 171

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGK 236
           +  D+    ++GKG K R VPL      AI  +       L    + +    LF G RGK
Sbjct: 172 VQLDEQEAIVKGKGGKTRNVPLGGKAIAAIQTWLQKRDQLLGGSSDPDTAAALFLGARGK 231

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            ++P V Q  + +L   +GLP+    H+LRHSFA+H+L +  DLR++Q +LGH  +STTQ
Sbjct: 232 RISPRVVQLQLNKLATLVGLPVHVHPHSLRHSFASHMLQSAQDLRAVQELLGHANISTTQ 291

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           IYT ++ ++    + + YDQ HP   +K
Sbjct: 292 IYTRLDFQH----LAQAYDQAHPRAGRK 315


>gi|292493801|ref|YP_003529240.1| tyrosine recombinase XerC [Nitrosococcus halophilus Nc4]
 gi|291582396|gb|ADE16853.1| tyrosine recombinase XerC [Nitrosococcus halophilus Nc4]
          Length = 300

 Score =  259 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 96/312 (30%), Positives = 160/312 (51%), Gaps = 16/312 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E     Q +L +L+ ERGLS  T+ SY  D  +   F   +      IQ   +L   ++R
Sbjct: 4   EQQAWIQRFLTHLQYERGLSGQTIVSYRRDLAKVATFCDRH-----GIQGWGELDAQKVR 58

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           A ++    + +  RS++R LS ++SF  YL++  +        +   K    LP AL+  
Sbjct: 59  ALVAAHHQKGLSGRSIQRLLSALRSFSTYLQREGVVENHPAQGVSAPKGKRQLPHALDVD 118

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q   L+          +  +  R+ A+L L Y  GLR++E + L  + +  + + +R+ G
Sbjct: 119 QVAQLL------KGEPSDQLLLRDQAMLELFYSSGLRLAELVGLNLRELDLEAALVRVVG 172

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R VPL    + A+L +  +         Q  +F   +G+ L+P   Q+ +R    
Sbjct: 173 KGAKTREVPLGRQAKAALLAWLPVR-EAWTPRNQDAVFVSRQGRRLSPRGVQKRLRIWGL 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL ++   H LRH+FA+HLL + GDLR++Q +LGH  +STTQIYT+++ ++    + +
Sbjct: 232 RQGLDVAIHPHRLRHAFASHLLESSGDLRAVQELLGHADISTTQIYTHLDFQH----LAK 287

Query: 313 IYDQTHPSITQK 324
           +YDQTHP   +K
Sbjct: 288 VYDQTHPRARKK 299


>gi|259046718|ref|ZP_05737119.1| integrase/recombinase XerC [Granulicatella adiacens ATCC 49175]
 gi|259036614|gb|EEW37869.1| integrase/recombinase XerC [Granulicatella adiacens ATCC 49175]
          Length = 318

 Score =  259 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 152/309 (49%), Gaps = 17/309 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E Q++L  +++ER  S  T+ +YE D + F  +L      ++ I +   +S  ++R ++ 
Sbjct: 5   EMQDFLAYIKVERRYSPETIHAYERDIQHFCDYLT-----EVPITSWNDVSVVDVRIYLG 59

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               +     S+ R LS ++SF  +L +RK    +   ++   K    LP    E +   
Sbjct: 60  VLHRENYNRSSISRFLSSLRSFYHFLVERKAVESNPFASVSYKKGKMLLPEFFYEDEIEK 119

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
            ++++        + +D RN A++ +LY  G+R+SE  +LT + +  D S + + GKG K
Sbjct: 120 FINSI-----DGNQSLDQRNKALVEVLYATGMRVSELTNLTLEQLDLDNSIILVIGKGSK 174

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            R VP+    R A+  Y +    DL          +F    G PL     +  + +L + 
Sbjct: 175 ERYVPIGDFARTALETYLEEGRKDLMAKERKEHFFVFVNHLGDPLTTNGVRYILEKLIQE 234

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL L    H LRH+FATHLL+NG D+R++Q +LGH  LS+TQIYT+V  +     + + 
Sbjct: 235 SGLTLKIHPHMLRHTFATHLLNNGADMRTVQELLGHVSLSSTQIYTHVTKE----ALQQN 290

Query: 314 YDQTHPSIT 322
           Y    P   
Sbjct: 291 YQLYFPRSK 299


>gi|260576668|ref|ZP_05844655.1| integrase family protein [Rhodobacter sp. SW2]
 gi|259021153|gb|EEW24462.1| integrase family protein [Rhodobacter sp. SW2]
          Length = 307

 Score =  259 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 126/313 (40%), Positives = 177/313 (56%), Gaps = 9/313 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++S       + WL  L    G +  T+ +Y  D   +L FL+ +      +  +  +  
Sbjct: 4   VISPAARDALEAWLTQLRALDGAADHTITAYSADVAGYLSFLSLHRGGTEGLAALTAVPL 63

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++RA+++  + + +  RSL R+LS +K F  +L +R+    + +L+ R  K    LPR 
Sbjct: 64  ADLRAWMAHEKGRGLSPRSLARALSAVKGFTGWLAEREGADATAVLSARAPKFRRKLPRP 123

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+   A  ++D V   +     WI AR++A++ LLYGCGLRISEAL LT          L
Sbjct: 124 LSVDAAADVLDRVGDQSLEP--WIAARDAAVVTLLYGCGLRISEALGLT-GATHPLPEVL 180

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKG K R+VP+LP+ R A+  Y  LCPF+L      PLFRG RG  LNP      + 
Sbjct: 181 RITGKGGKQRLVPVLPAARAAVARYVSLCPFELAA--TGPLFRGARGGALNPRQIALVME 238

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           + R  LGLP S T H LRHSFATHLLS GGDLR+IQ +LGH  LSTTQ YT V+++    
Sbjct: 239 KTRAQLGLPASATPHALRHSFATHLLSAGGDLRAIQELLGHASLSTTQGYTAVDTQR--- 295

Query: 309 WMMEIYDQTHPSI 321
            +ME+YD+ HP  
Sbjct: 296 -LMEVYDKAHPRA 307


>gi|144898915|emb|CAM75779.1| Tyrosine recombinase xerC [Magnetospirillum gryphiswaldense MSR-1]
          Length = 314

 Score =  259 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 122/322 (37%), Positives = 171/322 (53%), Gaps = 9/322 (2%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M    +      +L      W   L  E+  S  TL  Y  D   F  FL  +   +  +
Sbjct: 1   MPPTPIHFAARPDLAAAIGQWRDWLAGEKRSSPHTLDGYARDVSAFTTFLLGHLGGEADL 60

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             + QL   + RAF++ R+   +G  S+ R +S ++ F KYL +  +     I  +++ +
Sbjct: 61  AALGQLQPADFRAFLAARQADGLGRSSVARLMSSLRGFFKYLDRHDLVHNPAINAVKSPR 120

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
              SLP+ L  + A+  +        H+  W+ AR+ A+  LLYGCGLR+ EAL+L  ++
Sbjct: 121 PPKSLPKPLAAEDAIEALST--AGELHDEPWLAARDVALFTLLYGCGLRLGEALALQKRD 178

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
            +     + I GKG K R+VP+LP VR+AI EY  LCP  L  +   PLF G RG  LNP
Sbjct: 179 -IPAGDAMTITGKGRKQRLVPVLPIVRQAIGEYVTLCPHPLAAD--GPLFVGARGGLLNP 235

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           GV QR +R+LR  +GLP + T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ YT 
Sbjct: 236 GVVQRQMRRLRALMGLPDTATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQRYTQ 295

Query: 301 VNSKNGGDWMMEIYDQTHPSIT 322
           V+       +   Y   HP   
Sbjct: 296 VDEAR----LTRAYRDAHPRAK 313


>gi|182416388|ref|YP_001821454.1| tyrosine recombinase XerD [Opitutus terrae PB90-1]
 gi|177843602|gb|ACB77854.1| tyrosine recombinase XerD [Opitutus terrae PB90-1]
          Length = 317

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 92/312 (29%), Positives = 143/312 (45%), Gaps = 15/312 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
                  + + +L  + +ERGL+  T+ SY  D  Q    LA         +  R ++  
Sbjct: 14  APPAFADDIEAFLGYIALERGLAANTVASYRRDLDQAATHLAAQ-----GARDWRAVTGE 68

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +   +I    +      SL R LS ++S   +L + +   +     +   K S  +P  L
Sbjct: 69  QAAGWIHSLSSASYTVASLARKLSALRSLAHFLVRERFRADDFTALLSGPKASRRIPGTL 128

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            E++   L+                R+ A+L L Y  GLR+SE   L  Q +  +   LR
Sbjct: 129 TEEEIARLL-----AAPTGGDARALRDRALLELFYSSGLRVSELAGLLLQQVDLEHGFLR 183

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           + GKG K R+VP+     +A+  Y     P  +       LF    G PL+  +    ++
Sbjct: 184 VFGKGAKERVVPIGGKAIEALATYLTAGRPHFVRSRTGSQLFLNKNGGPLSRVMLWMLVK 243

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +  +  GL  +   H LRHSFATHLLS G DLR+IQ +LGH  +STTQIYT+V S+    
Sbjct: 244 KYAKRAGLTKNVKPHGLRHSFATHLLSGGADLRAIQEMLGHASISTTQIYTSVESQR--- 300

Query: 309 WMMEIYDQTHPS 320
            ++E +D+ HP 
Sbjct: 301 -LLEQHDKFHPR 311


>gi|239993652|ref|ZP_04714176.1| tyrosine recombinase [Alteromonas macleodii ATCC 27126]
          Length = 306

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 88/324 (27%), Positives = 163/324 (50%), Gaps = 18/324 (5%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M  + L   +S    +    +L +L++ERGLS  T+++Y+    +    L  Y       
Sbjct: 1   MSTDAL---ISEPCQQWLDKFLLHLQVERGLSLHTIKNYQRQLTEVAKLLGLYE------ 51

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
                L+ ++I+  ++  +      RS+   LS +++F +YL   +    + +  ++  K
Sbjct: 52  --WSGLTPSDIKRVMADAKMSGHSPRSIALRLSALRTFCQYLIDHQQLFSNPVEGIQAPK 109

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +   LP+ L+  +   L++     +S + + +  R+ A+  LLYGCGLR+SE   L   +
Sbjct: 110 QGKPLPKQLSVDEMQQLLNAS-PRSSDDDEGMQLRDVAMFELLYGCGLRLSELTGLNLAD 168

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
            + D  T+++ GKG K RI+PL    +KA+  +  + P       +  +F   R   ++ 
Sbjct: 169 CLKD-GTVKVMGKGSKQRILPLGRHAQKALNAWLKVRP-AYASPYESAVFVSKRKTRISN 226

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                 + ++     L    + H LRHSFATH+L + GDLR++Q +LGH  LSTTQ+YT+
Sbjct: 227 RQVANRLDKMASEQSLSQKVSPHKLRHSFATHVLESSGDLRAVQELLGHANLSTTQVYTH 286

Query: 301 VNSKNGGDWMMEIYDQTHPSITQK 324
           ++ ++    + ++YD  HP   +K
Sbjct: 287 LDFQH----LAKVYDAAHPRAHKK 306


>gi|158521685|ref|YP_001529555.1| tyrosine recombinase XerD [Desulfococcus oleovorans Hxd3]
 gi|158510511|gb|ABW67478.1| tyrosine recombinase XerD [Desulfococcus oleovorans Hxd3]
          Length = 297

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 88/306 (28%), Positives = 153/306 (50%), Gaps = 15/306 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +    ++  L IE+GL++ +L++Y  D   +L +L         I  + +     +  ++
Sbjct: 6   RLVDQYMSYLLIEKGLAENSLEAYGSDLAAYLDYLKAQ-----NIDRVSETDMPVLLKYL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
              R + +  RS  R L  ++ F +YL + K+   S    +   KK   LP  L+  +  
Sbjct: 61  IFLRDRGLNKRSRSRHLVTLRGFYRYLAQEKVLAFSPAETIDLPKKGLRLPDVLSVDEVK 120

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+          T     R++A++ L+Y  GLR+SE +++  Q++  +   +R+ GKG 
Sbjct: 121 KLL-----AAPDTTTARGMRDAAMIELMYAAGLRVSELVAMKVQDVNTEVCFVRVFGKGA 175

Query: 196 KIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K R+VP+    ++ +  Y     P  L     L LF   RG+P+    F + +++     
Sbjct: 176 KERVVPMGAYAKEKLEAYLSGARPALLKNYASLFLFVAWRGRPMTRQGFWKALKKYGLAA 235

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+  S   HTLRHSFA+HLL  G DLRS+Q +LGH  +STTQIYT+V  ++    + + +
Sbjct: 236 GIRKSIKPHTLRHSFASHLLEGGADLRSVQIMLGHSDISTTQIYTHVTYRH----LKDAH 291

Query: 315 DQTHPS 320
           ++ HP 
Sbjct: 292 EKFHPR 297


>gi|163742251|ref|ZP_02149639.1| site-specific tyrosine recombinase XerC [Phaeobacter gallaeciensis
           2.10]
 gi|161384581|gb|EDQ08962.1| site-specific tyrosine recombinase XerC [Phaeobacter gallaeciensis
           2.10]
          Length = 311

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 125/313 (39%), Positives = 181/313 (57%), Gaps = 9/313 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++S       + WL  L   +G ++ T+ +Y  D  +FL F+  +      +  + ++S 
Sbjct: 8   LISPACRDALEQWLAGLAALQGAAENTVTAYRGDVVEFLAFMTHHFGGPQGLGALAEIST 67

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++RA+++  R    G RSL R LS +KSF  +L +R+    + +L+ R+ K    LPR 
Sbjct: 68  GDMRAWMAATRATGTGARSLARKLSAVKSFYTWLAERQGFEPTAVLSARSPKFQKKLPRP 127

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L E  A  +++ V   ++  T W+ AR+ A++ LLYGCGLRISEAL LT  +     + L
Sbjct: 128 LAEDAARAVIETVEFQST--TDWVAARDVAVVTLLYGCGLRISEALGLTGADAPL-PAVL 184

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKG K RIVP+L + R A+  Y  LCP         PLFRG+RG  LN  + +  + 
Sbjct: 185 RITGKGGKERIVPVLSAARAAVDRYLRLCPHPQERAA--PLFRGVRGGALNARLIRSAMA 242

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           Q R  LGLP S T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ YT V++ +   
Sbjct: 243 QARAQLGLPASATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAH--- 299

Query: 309 WMMEIYDQTHPSI 321
            +M++Y++ HP  
Sbjct: 300 -LMDVYNRAHPKA 311


>gi|297570024|ref|YP_003691368.1| tyrosine recombinase XerD [Desulfurivibrio alkaliphilus AHT2]
 gi|296925939|gb|ADH86749.1| tyrosine recombinase XerD [Desulfurivibrio alkaliphilus AHT2]
          Length = 356

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 103/345 (29%), Positives = 159/345 (46%), Gaps = 36/345 (10%)

Query: 3   GNNLPEIVSFEL---LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE---- 55
            + L E+VS      L     +LQ L  ER L+  TL +Y+ D   F  FLA  T     
Sbjct: 20  ADPLLEVVSGAFPFVLPLLDFFLQYLAAERRLATNTLAAYQSDLLSFFAFLARATAPVAA 79

Query: 56  -------------------EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
                                  I  I Q+    +RA+++  R +K   RS  R +S ++
Sbjct: 80  TVDAGATGTAGKDRGAGLASARPITEINQIGPEHLRAYLAACRQEKAAPRSTSRRISALR 139

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
           +F ++L+  ++        +   K   +LP+ L+  +   L    L   +     +  RN
Sbjct: 140 AFFRFLQGEQLLGHDPAALLDLPKIGRALPKVLSSAEVEQL----LAPPAPPASILALRN 195

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-D 215
            A+L+LLY  G+R+SE + L    +      LRI GKG K R+VP   + R+A+  Y   
Sbjct: 196 HAMLHLLYATGMRVSELVKLPVAAVN-QAGHLRILGKGSKERLVPFGEAARQAMAVYITQ 254

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
             P  L       LF   RG  +    F + +R+  R  G+    + H LRHSFATHLL 
Sbjct: 255 ARPRLLKKRRSDFLFVTGRGTAMTRLRFWQIVRKSARERGIAREISPHVLRHSFATHLLE 314

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           +G DLR++Q +LGH  ++TTQIYT+V++      +  I+ + HP 
Sbjct: 315 HGADLRAVQVMLGHADIATTQIYTHVDTNR----LKAIHRKFHPR 355


>gi|327312733|ref|YP_004328170.1| putative tyrosine recombinase XerD [Prevotella denticola F0289]
 gi|326945335|gb|AEA21220.1| putative tyrosine recombinase XerD [Prevotella denticola F0289]
          Length = 315

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 90/310 (29%), Positives = 152/310 (49%), Gaps = 16/310 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            + + L++E+G S  TL +Y  D  + L +LA          ++  ++  ++  F +   
Sbjct: 13  RFRRYLKLEKGCSPNTLDAYLHDVDKLLRYLAGEQ------VSVTDVTLEQLEHFAASVS 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              IG RSL R LS ++ F ++L             + + K+ + LP  L+  +   L  
Sbjct: 67  DLGIGARSLARILSSVRQFYRFLVLDGYMEADPTELLESPKQPDHLPEVLSTAEVDLLEQ 126

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            V L     TKW   RN AI+ +L+ CGLR+SE   L   ++  D+  +R+ GKG K R+
Sbjct: 127 AVDL-----TKWEGHRNRAIIEVLFSCGLRVSELTHLKLSDLYRDEQFVRVMGKGSKERL 181

Query: 200 VPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+ P     +  ++       +    +  +F   RG  L   +    I++     G+  
Sbjct: 182 VPISPRALDELDCWFADRNVMKIKSGEEDYVFLNRRGHHLTRTMILIMIKRYAVEAGIRK 241

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++      ++E     H
Sbjct: 242 TISPHTLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDTSTLRQEILE----HH 297

Query: 319 PSITQKDKKN 328
           P   + DK++
Sbjct: 298 PRNIRYDKEH 307


>gi|116625461|ref|YP_827617.1| tyrosine recombinase XerD subunit [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116228623|gb|ABJ87332.1| tyrosine recombinase XerD subunit [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 302

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 87/303 (28%), Positives = 141/303 (46%), Gaps = 19/303 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L    IE+GLS  ++ +Y  D  +F+ F     E              EIR +I    
Sbjct: 18  AFLNFCRIEKGLSPNSISAYSADLARFVQFTGDVQEPP---------GVPEIRQYIDHLY 68

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              + +RS+ R L+ +++F  +L +          ++R  ++  ++P+ LN ++   ++ 
Sbjct: 69  QTGLSNRSVGRHLTTLRNFYGFLLREGKVATDPTEHLRTPRQWQTIPKYLNLEEIERII- 127

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                     K +  R+ A++ +LY  GLR+SE   L   ++  +   LR  GKG+K R+
Sbjct: 128 ----QAPDLAKPLGLRDRAMMEVLYASGLRVSELCKLGIGDLDLEYQVLRTTGKGNKQRL 183

Query: 200 VPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+  +   A+  Y +   P  L       LF   RG  +    F + +    R  G+  
Sbjct: 184 VPVGKAAVLAVRAYLESGRPGLLKGRASRYLFVTARGGCMTRQGFWKLLAAYGRKAGIFH 243

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             T H LRHSFATHLL  G DLRS+Q +LGH  +STTQIYT+V        +    ++ H
Sbjct: 244 GLTPHVLRHSFATHLLEGGADLRSVQVMLGHADISTTQIYTHV----MRSRLRATVEKHH 299

Query: 319 PSI 321
           P  
Sbjct: 300 PRA 302


>gi|260186653|ref|ZP_05764127.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           CPHL_A]
 gi|289447315|ref|ZP_06437059.1| integrase [Mycobacterium tuberculosis CPHL_A]
 gi|289420273|gb|EFD17474.1| integrase [Mycobacterium tuberculosis CPHL_A]
          Length = 311

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 89/318 (27%), Positives = 145/318 (45%), Gaps = 19/318 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L  + Q +L +L IERG++  TL SY  D R++   L     E+  I  + ++   ++  
Sbjct: 4   LALQLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHL-----EERGITDLAKVGEHDVSE 58

Query: 74  FISKRR-------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           F+   R       T  +   S  R+L  ++   ++     +        +R    S  LP
Sbjct: 59  FLVALRRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLVELDVARAVRPPTPSRRLP 118

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           ++L   + L+L++        +   +  RN A+L LLY  G RISEA+ L   +I     
Sbjct: 119 KSLTIDEVLSLLEGAGGDKPSDG-PLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHAR 177

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQ 244
           ++ ++GKG K R+VP+      A+  Y      DL    +    +F   RG  L+     
Sbjct: 178 SVLLRGKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAW 237

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + ++      G+    + H LRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V   
Sbjct: 238 QVLQDAAERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVT-- 295

Query: 305 NGGDWMMEIYDQTHPSIT 322
                + E++   HP   
Sbjct: 296 --VHALREVWAGAHPRAR 311


>gi|149908511|ref|ZP_01897173.1| tyrosine recombinase [Moritella sp. PE36]
 gi|149808345|gb|EDM68282.1| tyrosine recombinase [Moritella sp. PE36]
          Length = 333

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 84/318 (26%), Positives = 155/318 (48%), Gaps = 11/318 (3%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +  +LLK  + +L+ +  ER LS  T+++Y      F   +       + I   R L  +
Sbjct: 27  LPVQLLKPIERFLRYITSERQLSLHTVRNYRRHLILFAEQMLT-----LPITEWRALDAS 81

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++R   +      +  RSL   LS ++SF  YL  +   T +    +   ++   LP+ L
Sbjct: 82  QVRKLATLNHKLGLSPRSLATKLSALRSFCDYLVLQGDLTANPAKGVSAPRQHKPLPKNL 141

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  +   L+       S +  ++  R+ A++ L+Y  GLR+ E ++L   ++   + T+R
Sbjct: 142 DVDEINQLLSVSNAVESDD-PFLVLRDKAMMELMYSAGLRLDELVNLDLTDVKLREKTMR 200

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG+K R +P+      A+  +  +   +   N Q  LF     + ++    Q  + +
Sbjct: 201 VIGKGNKQRQLPIGSIAITALQAWLAVR-GEYADNAQPALFVSQLRRRISHRSVQSRMAK 259

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +   L      H LRHSFATH+L + GDLR++Q +LGH  +STTQIYT+++ ++    
Sbjct: 260 WGQQQTLTSHVNPHKLRHSFATHMLESSGDLRAVQELLGHANISTTQIYTSLDFQH---- 315

Query: 310 MMEIYDQTHPSITQKDKK 327
           + ++YD  HP   +K + 
Sbjct: 316 LAKVYDAAHPRAKKKRED 333


>gi|319425289|gb|ADV53363.1| tyrosine recombinase XerD [Shewanella putrefaciens 200]
          Length = 300

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 97/316 (30%), Positives = 152/316 (48%), Gaps = 18/316 (5%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +P+I   + L     +L +L   +GLS  TL +Y  D R F      +        T+ +
Sbjct: 1   MPKIYQSDPL--IDAFLDDLWSSKGLSDNTLSAYRTDLRHFDRHQQRHG------TTLLE 52

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
            +  ++R++++ R  Q     S  R LS ++ F  YL   K      +  + + K +  L
Sbjct: 53  ATAADVRSYLALRLEQHFARTSSARLLSSLRRFYTYLLLTKQIAVDPMALIESPKLTRHL 112

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P +L+E Q   L+        +    ++ R+ A+L LLY  GLR+SE + LT + +   Q
Sbjct: 113 PHSLSESQVDRLL-----AEPNVDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQ 167

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQ 244
             +RI GKG K R+VPL       +  Y      +L        +F   RG+ +    F 
Sbjct: 168 GLVRIVGKGGKERLVPLGELAVTEVEAYLKFARQELLGHKQSDVVFPSNRGQMMTRQTFW 227

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             I+      G+  + + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V   
Sbjct: 228 HRIKLYALRAGIETALSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHV--- 284

Query: 305 NGGDWMMEIYDQTHPS 320
                + E++ Q HP 
Sbjct: 285 -ARARLQELHQQHHPR 299


>gi|332139609|ref|YP_004425347.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549631|gb|AEA96349.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 306

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 89/324 (27%), Positives = 165/324 (50%), Gaps = 18/324 (5%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M  + L   +S    +    +L +L++ERGLS  T+++Y+    +    L  Y       
Sbjct: 1   MSTDAL---ISEPCQQWLDKFLLHLQVERGLSLHTIKNYKRQLTEVAKLLGLYE------ 51

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
                L+ ++I+  ++  +      RS+   LS +++F +YL + +    + +  ++  K
Sbjct: 52  --WSGLTPSDIKRVMADAKMSGHSPRSIALRLSALRTFCQYLIEHQQLFSNPVEGIQAPK 109

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +   LP+ L+  +   L++     +S E + +  R+ A+  LLYGCGLR+SE   L   +
Sbjct: 110 QGKPLPKQLSVDEMQQLLNAS-PQSSDEDEGMQLRDVAMFELLYGCGLRLSELTGLNLAD 168

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
            + D  T+++ GKG K RI+PL    +KA+  +  + P       +  +F   R   ++ 
Sbjct: 169 CLKD-GTVKVMGKGSKQRILPLGRHAQKALNAWLKVRP-AYASPYESAVFVSKRKTRISN 226

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                 + ++ +   L    + H LRHSFATH+L + GDLR++Q +LGH  LSTTQ+YT+
Sbjct: 227 RQVANRLDKMAKEHSLSQKVSPHKLRHSFATHVLESSGDLRAVQELLGHANLSTTQVYTH 286

Query: 301 VNSKNGGDWMMEIYDQTHPSITQK 324
           ++ ++    +  +YD+ HP   +K
Sbjct: 287 LDFQH----LANVYDEAHPRAHKK 306


>gi|325860159|ref|ZP_08173284.1| putative tyrosine recombinase XerD [Prevotella denticola CRIS
           18C-A]
 gi|325482246|gb|EGC85254.1| putative tyrosine recombinase XerD [Prevotella denticola CRIS
           18C-A]
          Length = 315

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 90/310 (29%), Positives = 153/310 (49%), Gaps = 16/310 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            + + L++E+G S  TL +Y  D  + L +LA          ++  ++  ++  F +   
Sbjct: 13  RFRRYLKLEKGCSPNTLDAYLHDVDKLLRYLAGEQ------VSVTDVTLEQLEHFAASVS 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              IG RSL R LSG++ F ++L             + + K+ + LP  L+  +   L  
Sbjct: 67  DLGIGARSLARILSGVRQFYRFLVLDGYMEADPTELLESPKQPDHLPEVLSTAEVDLLEQ 126

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            V L     TKW   RN AI+ +L+ CGLR+SE   L   ++  ++  +R+ GKG K R+
Sbjct: 127 AVDL-----TKWEGHRNRAIIEVLFSCGLRVSELTHLKLSDLYREEQFVRVMGKGSKERL 181

Query: 200 VPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+ P     +  ++       +    +  +F   RG  L   +    I++     G+  
Sbjct: 182 VPISPRALDELDCWFADRNVMKIKPGEEDYVFLNRRGHHLTRTMILIMIKRYAVEAGIRK 241

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++      ++E     H
Sbjct: 242 TISPHTLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDTSTLRQEILE----HH 297

Query: 319 PSITQKDKKN 328
           P   + DK++
Sbjct: 298 PRNIRYDKEH 307


>gi|83944764|ref|ZP_00957130.1| integrase/recombinase XerC, putative [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851546|gb|EAP89401.1| integrase/recombinase XerC, putative [Oceanicaulis alexandrii
           HTCC2633]
          Length = 313

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 123/309 (39%), Positives = 185/309 (59%), Gaps = 11/309 (3%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K    +L +LE ER LS  T+++Y+ D      FL  +   ++T++ +  LS  + RA++
Sbjct: 14  KALSAFLSHLEGERRLSPRTVEAYDRDLSGLFEFLTGHLGGRLTLKALSDLSSADWRAWL 73

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQA 134
           + RR   +G R+L+R LS  ++F  Y  +R+   ++  L  + + K     PR ++E  A
Sbjct: 74  ADRRRDGVGPRTLQRGLSAARTFFSYG-RRRWGLDNPALGLVESPKAQRRQPRPVSESAA 132

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
            +L+      T  +  WI AR++A+L LLYGCGLRISEAL+LT ++    +  LR+ GKG
Sbjct: 133 KSLLKE--AETGAKEPWIGARDAAVLSLLYGCGLRISEALALTGRDHPLPE-VLRVAGKG 189

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K RIVP+LP+VR+A+  Y D CP+ +  +   PLFR  RG PL     Q  ++ +R  L
Sbjct: 190 GKTRIVPVLPAVRQAVSAYVDACPYQIERDE--PLFRASRGGPLQARAMQSAMQTMRSRL 247

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           GLP + T H LRH+FATHLL++GGDLR+IQ +LGH  LSTTQIY ++        ++ I+
Sbjct: 248 GLPATATPHALRHAFATHLLAHGGDLRAIQDLLGHASLSTTQIYADIEQSR----LIAIH 303

Query: 315 DQTHPSITQ 323
             THP   +
Sbjct: 304 AATHPRARK 312


>gi|33151294|ref|NP_872647.1| site-specific tyrosine recombinase XerD [Haemophilus ducreyi
           35000HP]
 gi|71153413|sp|Q7VPN8|XERD_HAEDU RecName: Full=Tyrosine recombinase xerD
 gi|33147514|gb|AAP95036.1| integrase/recombinase XerD [Haemophilus ducreyi 35000HP]
          Length = 297

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 97/310 (31%), Positives = 155/310 (50%), Gaps = 18/310 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L    + +L  L +E+ LS  TL SY  D   F  +L       +  +    L++T+++
Sbjct: 3   KLDPIIEQFLDTLWLEQSLSHNTLLSYRLDLELFSAWL-------VEPRAFLTLTHTDLQ 55

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F+  R  +     S  R +S ++ F ++L   K   +     + + +K   LP++L+E+
Sbjct: 56  LFLGDRLDKGYKSSSSARIISCLRKFFRFLCLEKYRLDDPTSMLISPRKRVQLPKSLSEE 115

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q + L+D       +    I+ R+ A+L LLY  GLR++E +SLT  N+   Q  +R+ G
Sbjct: 116 QVMDLLD-----APNPLDPIELRDKAMLELLYATGLRVTELISLTIDNLNLRQGVVRVIG 170

Query: 193 KGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KGDK R+VP+       I E++D      L+      LF   R K +    F   I+   
Sbjct: 171 KGDKERLVPIGEEASYWIQEFFDYGRMILLSDQQSDVLFPSRRAKQMTRQTFWHRIKYYA 230

Query: 252 RYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              G+     + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V        +
Sbjct: 231 ILAGIDAEKLSPHVLRHAFATHLINHGADLRVVQMLLGHSDLSTTQIYTHV----AKTRL 286

Query: 311 MEIYDQTHPS 320
             I+ Q HP 
Sbjct: 287 KSIHKQFHPR 296


>gi|301155134|emb|CBW14598.1| site-specific tyrosine recombinase [Haemophilus parainfluenzae
           T3T1]
          Length = 295

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 96/308 (31%), Positives = 150/308 (48%), Gaps = 17/308 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +   L IER +S  TL +Y+      L  LA     +  IQ  +Q++ + +R  +++
Sbjct: 5   LNQYWDYLRIERQVSPHTLTNYQHQLDAILAILA-----EKGIQHWQQVNPSVVRLILAE 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R Q + ++SL   LS ++ F  YL ++     +    +   K+   LP+ ++ +Q   L
Sbjct: 60  SRKQGLKEKSLALRLSALRQFFSYLVQQGQMKVNPATGISAPKQGKHLPKNIDAEQVQKL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           + N           ID R+ A++ L+Y  GLR+SE   L   +I      +R+ GKG+K 
Sbjct: 120 LSN------DSKDPIDLRDRAMMELMYSSGLRLSELQGLNLNSINTRVREVRVIGKGNKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RIVP       AI ++  + P  L       LF   +G  L     Q+ +       GL 
Sbjct: 174 RIVPFGRYASHAIQQWLKVRP--LFNPKDDALFVSQQGNRLTHRSIQKRMETWGIRQGLN 231

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    + E+YDQ 
Sbjct: 232 SHLNPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEVYDQA 287

Query: 318 HPSITQKD 325
           HP   +K 
Sbjct: 288 HPRAKRKK 295


>gi|28378545|ref|NP_785437.1| integrase/recombinase [Lactobacillus plantarum WCFS1]
 gi|254556759|ref|YP_003063176.1| integrase/recombinase [Lactobacillus plantarum JDM1]
 gi|308180702|ref|YP_003924830.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28271381|emb|CAD64286.1| integrase/recombinase [Lactobacillus plantarum WCFS1]
 gi|254045686|gb|ACT62479.1| integrase/recombinase [Lactobacillus plantarum JDM1]
 gi|308046193|gb|ADN98736.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 296

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 87/310 (28%), Positives = 149/310 (48%), Gaps = 16/310 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  +  ++L  L +ERGL + T++SY  D   F  +L         I   R +    +  
Sbjct: 1   MQDQLADYLHFLRVERGLVENTIKSYSQDLTTFSEYLMSQQ-----ITDYRVVDRYVLLN 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++           ++  S+S ++ F +YL +        +L +   K++  LP+ L+ ++
Sbjct: 56  YLQYLDEAGKSRNTIIHSVSSLRKFFQYLAQMHAIDTDPMLKIDTPKRAQHLPQVLSPRE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+    L+T      +  R+  +L ++Y  GLR+SE ++LT  ++  D   ++  GK
Sbjct: 116 VERLLAVPKLNTP-----LGLRDRTLLEVMYATGLRVSETINLTMDDLHLDLGLIQTIGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GDK RI+P+       I  Y       L         LF    G  L+     + ++   
Sbjct: 171 GDKERIIPIGDVAIDFITRYLKTARPKLVSAKRRNSYLFINNHGGKLSRQGVWKNLKAEV 230

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +  G+  + T HTLRHSFATH+L NG DLR +Q +LGH  +STTQIYT+++ K     + 
Sbjct: 231 KAAGIEKNVTPHTLRHSFATHILENGADLRVVQELLGHADISTTQIYTHISKKR----LA 286

Query: 312 EIYDQTHPSI 321
           E+Y++ HP  
Sbjct: 287 EVYNKYHPRA 296


>gi|256829239|ref|YP_003157967.1| tyrosine recombinase XerD [Desulfomicrobium baculatum DSM 4028]
 gi|256578415|gb|ACU89551.1| tyrosine recombinase XerD [Desulfomicrobium baculatum DSM 4028]
          Length = 292

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 90/307 (29%), Positives = 151/307 (49%), Gaps = 16/307 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +E   +LQ+L + RGL++ T+++Y  D   F  FL+          ++ Q+    +  
Sbjct: 1   MHEEIDAYLQHLTVIRGLAEKTVEAYGSDLLFFRDFLSELGG------SLHQIDEHTLFL 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++   R + + + S+ R++S ++ F ++L + +    S    + + K    LP  L+  +
Sbjct: 55  YMVHLRRKGLKNTSMARNISSLRGFFEFLVQERHLASSPAALLDSPKLVRKLPEVLSRDE 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D   L+T      +  R+  +L LLY CGLR+SE +SLT  +       LR+ GK
Sbjct: 115 VTALLDRPALNTP-----LGFRDRTMLELLYACGLRVSELVSLTAPDFDPQAGLLRVLGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R VPL  S    +L +       L       +F    G  L+     + +R+    
Sbjct: 170 GSKERYVPLHDSAVSFMLSFLRQ-WRPLFGPKTDTVFLNRSGLGLSRQGVWKLLRRYALE 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    + HTLRHSFATHLL  G DLR++Q +LGH  +  T+IYT+V S      M+ +
Sbjct: 229 AGITRPVSPHTLRHSFATHLLEGGADLRTVQILLGHSDIMATEIYTHVQSAR----MVAL 284

Query: 314 YDQTHPS 320
           + + HP 
Sbjct: 285 HRKFHPR 291


>gi|189347316|ref|YP_001943845.1| tyrosine recombinase XerD [Chlorobium limicola DSM 245]
 gi|189341463|gb|ACD90866.1| tyrosine recombinase XerD [Chlorobium limicola DSM 245]
          Length = 306

 Score =  258 bits (660), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 92/313 (29%), Positives = 160/313 (51%), Gaps = 13/313 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++    +  +N+L +L +ER  S  T +SY  D +++L+F+          + I  +   
Sbjct: 6   LAEPYRRTLENFLNHLSVERNFSVNTRESYRNDLKRYLLFMQDEN------KAIGAVETA 59

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +IR FIS+     +   +L R++S I+S  K+L   +    +    ++  K + +LP  L
Sbjct: 60  DIRKFISELHATGLEASTLGRNISAIRSLHKFLLIERTLETNPAETIQQPKLAKNLPDVL 119

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  + ++L++  L         +  R+ AIL  LY  G+R+SE  +L  Q++  D   +R
Sbjct: 120 SLSEVMSLLEAPLQQNPPGKFLL--RDKAILEFLYAAGVRVSELTALQQQHLYFDAGFVR 177

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           I GKG K R+VP+  +  +AI +Y   L    +    +  LF   RGK L+       +R
Sbjct: 178 ILGKGSKERLVPVGNAAIEAITQYQNQLRIGMVTKESEDCLFLNARGKKLSRMAVYLMVR 237

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     G+  + + HTLRH+FATHLL  G DLR++Q +LGH  +  TQIYT+++      
Sbjct: 238 EYAALAGIRKNISPHTLRHTFATHLLEGGADLRAVQEMLGHSSILATQIYTHID----RS 293

Query: 309 WMMEIYDQTHPSI 321
           ++ E++   HP  
Sbjct: 294 FIREVHKTFHPRA 306


>gi|256847147|ref|ZP_05552593.1| tyrosine recombinase XerD [Lactobacillus coleohominis 101-4-CHN]
 gi|256715811|gb|EEU30786.1| tyrosine recombinase XerD [Lactobacillus coleohominis 101-4-CHN]
          Length = 296

 Score =  258 bits (660), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 83/310 (26%), Positives = 145/310 (46%), Gaps = 16/310 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++ Q++ Q L +ERGLS  T+QSY+ D ++   +          + +   +    +  
Sbjct: 1   MQQDVQDFSQFLLVERGLSNNTIQSYQNDLKKAAEYFTSQ-----NLSSWGDIDRYAVLN 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            ++          ++ R +S ++ F +YL ++       +  +   K    LP  L + +
Sbjct: 56  LLAHLTNLGQSRTTIGRQVSSLRQFYQYLLRQHRVMNDPMALVTIPKGQRHLPTVLTQDE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++           K +  R+ AIL ++Y  G+R+SE  +L   ++  D   ++ +GK
Sbjct: 116 VRRML-----AVPDTGKKMGIRDRAILEVMYATGMRVSELTNLRLNDLHLDVHLVQPRGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GDK RI+P+       +  Y      P   N      +F   R K L      + I++  
Sbjct: 171 GDKERIIPIGEVAESWLNRYLHSVRAPQLANKPASDFVFLNARAKQLTRQAIWQLIKKTA 230

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +   +    T HT+RHSFATHLL NG DLR +Q +LGH  ++TTQIYT+V+ K     ++
Sbjct: 231 QAAKIDKDVTPHTMRHSFATHLLENGADLRVVQELLGHSDITTTQIYTHVSQKR----LL 286

Query: 312 EIYDQTHPSI 321
            +Y  THP  
Sbjct: 287 TVYKNTHPRA 296


>gi|269215886|ref|ZP_06159740.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122]
 gi|269130836|gb|EEZ61912.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122]
          Length = 315

 Score =  258 bits (660), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 95/313 (30%), Positives = 146/313 (46%), Gaps = 17/313 (5%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
             LL   +++L  L IE+G S LT++SY  D   ++ FL     +   +   R ++   +
Sbjct: 15  APLLSSVRDFLSFLSIEKGSSDLTVRSYAADLEDYVAFL-----DSEGVHAARDVTRDAL 69

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
            ++++    +     S++R +S +K F  +L +  +        +        LP  L+ 
Sbjct: 70  ASYVADLSGRGYAAASIERHVSALKGFHAFLVRDGLVASDPACALPLPGVPARLPDVLSI 129

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            Q  TL+D            +  RN+  L LLYGCGLR SE   L   +   D+  LRI 
Sbjct: 130 DQVNTLLDQEFREGP-----LGVRNACALELLYGCGLRASELSGLDAGDAFLDEGILRIV 184

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLN--LNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           GKG + RIVP+  S  + +  Y +     L     +   +    RG  L+       +R+
Sbjct: 185 GKGSRERIVPIGGSAARCLASYLEDARPLLRSPRRLTPAVMLNARGGRLSRQSIHSIVRE 244

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
               +G+      HTLRHSFATHLL  G DLR+IQ +LGH  +STTQIYT+V+  +    
Sbjct: 245 AGHVIGI-KDLHPHTLRHSFATHLLEGGADLRAIQEMLGHSDISTTQIYTHVDRTH---- 299

Query: 310 MMEIYDQTHPSIT 322
           + E Y   HP   
Sbjct: 300 VREEYLSAHPRAK 312


>gi|282889659|ref|ZP_06298199.1| hypothetical protein pah_c003o054 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500486|gb|EFB42765.1| hypothetical protein pah_c003o054 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 304

 Score =  258 bits (660), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 156/309 (50%), Gaps = 16/309 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
             +E +++L  +  E+GLS  T+++Y  D + F  +       +  ++  + +    + A
Sbjct: 12  FFREIKDFLVFIRSEKGLSSNTIEAYMRDVQNFANYA-----WQQEVRRYQAVEPEHLIA 66

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+   ++      ++ R+L  +K F  +LK+     ++  + + + K    LP  L+ ++
Sbjct: 67  FLGSLKSADYATSTISRTLVSLKVFFGFLKREGTIEQNPSMLLESPKLWQLLPDILDIEE 126

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+     +          R+ AI  LLYG GLR+SE  +LT  +I D    +R+ GK
Sbjct: 127 VDLLM-----NQPDNKTAKGVRDRAIFELLYGSGLRVSEVCTLTIYSIDD--QYIRVYGK 179

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K RIVP+      A+ +Y  L  +  +   +  LF  +RGK ++     R I++  + 
Sbjct: 180 GSKERIVPIGSQALMAVDQYLSLYRWQWDSEKEQSLFVTLRGKSMDRISIWRSIKEYAQQ 239

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+  + + HTLRHSFATHLL+NG DLR IQ +LGH  +S+T  YT V+S +    + E 
Sbjct: 240 AGITKTISPHTLRHSFATHLLNNGADLRVIQDLLGHANISSTDRYTRVSSAH----LQEA 295

Query: 314 YDQTHPSIT 322
           + + HP   
Sbjct: 296 FHRFHPKWK 304


>gi|313672931|ref|YP_004051042.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939687|gb|ADR18879.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672]
          Length = 297

 Score =  258 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 81/310 (26%), Positives = 156/310 (50%), Gaps = 21/310 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   ++ +  LS+ ++++Y+ D  +   F   Y            L+ +++ +++S 
Sbjct: 8   VKRFQHYMKYDLSLSENSIEAYKRDLMELTRFTKDYN-----------LTPSDLVSYMSH 56

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R + +   S+ R+LSGI +F  +L + KI  ++ + ++   KK   LP+ LN ++   L
Sbjct: 57  LRKKGLSIESILRNLSGISAFYDFLIQEKIFDKNPVASISKPKKWEKLPKFLNFEEVEAL 116

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +     +   ++     R++ IL   Y  G+R+SE +     +I   +  + + GKG K 
Sbjct: 117 I-----NAPDKSTPTGYRDNIILKTFYSTGMRVSELVKCKTSDIDFKRGIVSVVGKGSKQ 171

Query: 198 RIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R +P+  S++  + +Y ++   + +       LF      PL        I++  +  G+
Sbjct: 172 RFLPIYQSLQDELKQYIEVRHRYFIKEKDNGFLFLNKNSAPLTRVYCWMLIKKYCKKAGI 231

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRHSFATHLL+NG DLR+IQ +LGH  ++TT+IYT++      + +  I +Q
Sbjct: 232 KKDISPHTLRHSFATHLLTNGADLRTIQLLLGHSDIATTEIYTHITD----NKVRSILEQ 287

Query: 317 THPSITQKDK 326
            HP    ++K
Sbjct: 288 FHPRFKMRNK 297


>gi|325107018|ref|YP_004268086.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM
           5305]
 gi|324967286|gb|ADY58064.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM
           5305]
          Length = 309

 Score =  258 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 88/316 (27%), Positives = 149/316 (47%), Gaps = 14/316 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +      +L+ L  ER  S+LT ++Y  D   F  FL +  +        R +  T +R 
Sbjct: 1   MEAAFDGFLRYLRHERNASELTRKAYAED---FASFLDYCEDRHGYFPEPRDVDTTFLRG 57

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++          ++ R L+ ++S  +Y  + ++   +    +R  +    LP  L   +
Sbjct: 58  YLAYLHDCGYQRTTIARRLACLRSLFRYCLREQLCDSNPAKALRTPRTGRKLPHYLTTSE 117

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++            +  R+ AIL  LY  GLR++E ++L  ++   D + L ++GK
Sbjct: 118 VSQLLE-----APPANHPLGIRDRAILETLYTAGLRVAELVALDIEDWDRDANVLLVRGK 172

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G K RI P+     +A+  + ++       N + Q  +F    G  L      R + +  
Sbjct: 173 GRKERIAPVGSYAERALSRWLEIREVGPRANSDDQQAIFLNKFGTRLTTRSVGRLLEKHL 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +  GL   T+ HTLRHSFATHLL  G DLRS+Q +LGH  L+TTQIYT+V++      + 
Sbjct: 233 QTSGLSNKTSPHTLRHSFATHLLDGGADLRSVQELLGHKSLTTTQIYTHVSTAR----LR 288

Query: 312 EIYDQTHPSITQKDKK 327
           + Y+  HP  T   +K
Sbjct: 289 DTYELAHPHATAARRK 304


>gi|150397765|ref|YP_001328232.1| site-specific tyrosine recombinase XerD [Sinorhizobium medicae
           WSM419]
 gi|150029280|gb|ABR61397.1| tyrosine recombinase XerD [Sinorhizobium medicae WSM419]
          Length = 313

 Score =  258 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 95/317 (29%), Positives = 153/317 (48%), Gaps = 14/317 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
              + +L+ +  ERG +  TLQSYE D R    FL            +   S  ++R+++
Sbjct: 7   AHLEAFLEMMSAERGAAVNTLQSYERDLRDARSFLRSRG------VGLVDASADDLRSYL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           S    +     S  R LS ++ F K+L    + T+     +   KK+ +LP+ L+ +   
Sbjct: 61  SHLTGEGFKSSSQARRLSALRQFYKFLYAEGLRTDEPTGILDAPKKNRALPKTLSIEDVT 120

Query: 136 TLVDNVLLHTSH--ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
            L+           E      R  A++ LLY  G+R+SE +SL    +  D   L I+GK
Sbjct: 121 RLIGQAETEAEKGGEDAVAKLRMHALIELLYATGMRVSELVSLPASVLAQDGRFLIIRGK 180

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRR 252
           G+K R+VPL  +  +A+  Y      + +      LF    R   L   VF R ++ L  
Sbjct: 181 GNKERLVPLSQTAIRAMRAYGQALHREADGADSPWLFPSYGRNGYLPRQVFARDLKSLAA 240

Query: 253 YLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             G+ ++  + H LRH+FA+HLL+NG DLR++Q +LGH  +STTQIYT+V  +     + 
Sbjct: 241 RAGIRVAAISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEER----LH 296

Query: 312 EIYDQTHPSITQKDKKN 328
           ++    HP   Q  K++
Sbjct: 297 DLVQSHHPLAKQAKKQD 313


>gi|315640716|ref|ZP_07895818.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952]
 gi|315483471|gb|EFU73965.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952]
          Length = 310

 Score =  258 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 105/324 (32%), Positives = 162/324 (50%), Gaps = 17/324 (5%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M   +  E  +   ++    + Q L +ERG S+ T  +Y  D  QFL FL     E+   
Sbjct: 1   MNKESFDEQENTPSIQWFDEFSQYLIVERGYSEKTQAAYAEDFFQFLDFL-----EQSGS 55

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           +    + Y ++R ++S    Q+    S+ R ++ ++SF +YL KR + TE+    +   K
Sbjct: 56  RDFLAIDYRDVRIYLSFLNDQEYSRNSISRKVASLRSFYQYLLKRMVLTENPFAYVHLKK 115

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K+  LPR   E +   L D+V       T+ ++ RN A+L +LYGCGLR+SE  ++T  +
Sbjct: 116 KNQKLPRFFYEDELQQLFDSV-----KGTEPLEQRNLALLEILYGCGLRVSECAAITLTS 170

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKP 237
           I  +   L + GKG K RIVP      KA+  Y      +L          LF    G P
Sbjct: 171 IDWEHQILLVYGKGSKERIVPFNEHANKAMSHYIQNGRKELLTQFKKEHDYLFVNHLGSP 230

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +     +  + QL +   L      H LRH+FATHLL+NG D+R++Q +LGH  LSTTQI
Sbjct: 231 VTATGIEYILNQLLKRSQLDSEIHPHKLRHTFATHLLNNGADMRTVQELLGHANLSTTQI 290

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSI 321
           Y +V  ++    + + Y + HP  
Sbjct: 291 YAHVTKES----LQKNYRKFHPRA 310


>gi|34222761|sp|O31087|XERC_SERMA RecName: Full=Tyrosine recombinase xerC
 gi|2625019|gb|AAC46276.1| site specific recombinase [Serratia marcescens]
          Length = 303

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 79/315 (25%), Positives = 148/315 (46%), Gaps = 17/315 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
            ++  L +    +L+ L++ER LS LT  SY       +        ++I +     L  
Sbjct: 3   PIAPSLQQPVDAFLRYLKVERQLSPLTQLSYSRQLTALM-----RLAQEIGVTDWTTLDA 57

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R   ++ +   +   SL   LS ++SFL +L  + +   +    +R  +    LP+ 
Sbjct: 58  ARVRMLAARSKRAGLQSASLALRLSSLRSFLDWLVSQGVLHANPAKGIRTPRSGRHLPKN 117

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++  +   L++  L         +  R+ A+L ++YG GLR+SE + L  +++      +
Sbjct: 118 IDVDEMNQLLEIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGLDCRHVDMAAGEV 171

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +P+  +    +  +      DL       +F   +G+ ++    Q+   
Sbjct: 172 WVMGKGSKERKLPIGRTAVTWLEHWL--AMRDLFGPQDDAMFLSNQGRRISTRNVQKRFA 229

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     G+      H LRHSFATH+L + GDLR++Q +LGH  L+TTQIYT+++ ++   
Sbjct: 230 EWGVKQGVNSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH--- 286

Query: 309 WMMEIYDQTHPSITQ 323
            +  +YD  HP   +
Sbjct: 287 -LANVYDAAHPRAKR 300


>gi|262202720|ref|YP_003273928.1| tyrosine recombinase XerD [Gordonia bronchialis DSM 43247]
 gi|262086067|gb|ACY22035.1| tyrosine recombinase XerD [Gordonia bronchialis DSM 43247]
          Length = 313

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 94/329 (28%), Positives = 151/329 (45%), Gaps = 23/329 (6%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M  +  PE     +      +L +L +ERG +  T+ SY  D  ++  +L         I
Sbjct: 1   MITDPFPE---GPIAAPVARYLDHLTVERGAAHNTVTSYRRDLERYQNYLIAR-----GI 52

Query: 61  QTIRQLSYTEIRAFISKRR-------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI 113
             + +++ ++IR F+   R       ++ + D S+ R+L   + F  +     + +    
Sbjct: 53  SGLAEVTESDIREFLVALRRGDEATGSRPLADSSIARTLVATRRFHGFAVDEGVVSTDVA 112

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
             +R  + +  LP++L   + L +++     +S        R+ A+L LLY CG RISEA
Sbjct: 113 HAVRPPRPARRLPKSLPVDEVLAILE----ASSTGDHPRALRDRALLELLYSCGARISEA 168

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
            SL   ++      +R++GKG K RIVP+      AI  Y       L       LF   
Sbjct: 169 TSLDVDDLDTAARAVRLRGKGGKERIVPVGGPAADAIDAYLVRGRPVLATRSAPALFLNA 228

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           RG  L+     + +       GL  + + HTLRHSFATHLL  G D+R +Q +LGH  ++
Sbjct: 229 RGGRLSRQSAWQVLVSAAERAGLDKAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVT 288

Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           TTQ+YT V      + M E+Y   HP   
Sbjct: 289 TTQVYTLVT----VNTMREVYATAHPRAR 313


>gi|145634691|ref|ZP_01790400.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittAA]
 gi|145268236|gb|EDK08231.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittAA]
          Length = 297

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 151/308 (49%), Gaps = 17/308 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L     +L    IE+GLS+ T+QSY  D      +L           ++  L   +++ F
Sbjct: 4   LALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWL------DKNDLSLETLDAVDLQGF 57

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + +R  +     S  R LS ++   +YL + K   +     + + K  + LP+ L E+Q 
Sbjct: 58  LGERLEKGYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQV 117

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
                + LL+T      ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG
Sbjct: 118 -----SDLLNTPDVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKG 172

Query: 195 DKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K RIVP+       + ++     P  LN      +F   R + +    F   ++     
Sbjct: 173 NKERIVPMGEEAAYWVRQFMLYGRPVLLNRQSSDVVFPSQRAQQMTRQTFWHRVKHYAIL 232

Query: 254 LGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             +     + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  
Sbjct: 233 ADIDADTLSPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER----LKR 288

Query: 313 IYDQTHPS 320
           ++++ HP 
Sbjct: 289 LHERFHPR 296


>gi|110635391|ref|YP_675599.1| site-specific tyrosine recombinase XerD [Mesorhizobium sp. BNC1]
 gi|110286375|gb|ABG64434.1| tyrosine recombinase XerD subunit [Chelativorans sp. BNC1]
          Length = 308

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 89/312 (28%), Positives = 145/312 (46%), Gaps = 17/312 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+ +  ERG S  TL SY  D      +L            + + S  +IR +++ 
Sbjct: 7   IEAFLEMMAAERGASDNTLASYRRDLGDADAYLEAPCG------GVFKASAADIRKYLAD 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     +  R LS ++ F K+L    +  +     + + KK   LP+ L+E +   L
Sbjct: 61  MTARGFASTTQARKLSSLRQFFKFLYSEGMRDDDPTGVLDSPKKGRPLPKTLSESEMNAL 120

Query: 138 VDNVLLHTSHETKWIDARNSA-----ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           ++              AR +A     +L +LY  GLR+SE +SL  +  + D+    ++G
Sbjct: 121 LERAADEAREAPAGTPARVAAQRLSTLLEMLYASGLRVSELVSLPLRVALRDERFFTVRG 180

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLR 251
           KG K R+VPL    R+A+  +        +      LF  +     L+  VF R ++ L 
Sbjct: 181 KGGKERMVPLSAKAREAVALWLKERARHPSFANSPWLFPAVSASGYLSRQVFARELKGLA 240

Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              G+     + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V  K     +
Sbjct: 241 GRAGISTAKISPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHVLEKR----L 296

Query: 311 MEIYDQTHPSIT 322
            E+  + HP   
Sbjct: 297 QELVQKHHPLAD 308


>gi|296532590|ref|ZP_06895295.1| tyrosine recombinase XerC [Roseomonas cervicalis ATCC 49957]
 gi|296267081|gb|EFH13001.1| tyrosine recombinase XerC [Roseomonas cervicalis ATCC 49957]
          Length = 307

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 124/309 (40%), Positives = 174/309 (56%), Gaps = 10/309 (3%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+ R  WL  LE ER  S+ TL +Y  D  +FL FL  +   +     ++ L   ++RAF
Sbjct: 8   LEARALWLDWLEKERRASRHTLAAYGADLAEFLGFLTRHLGAEPDFAALQALRPADLRAF 67

Query: 75  ISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++R  +  +G+ +  R L+ I+ FL++L KR       I  +R  K     PR L   Q
Sbjct: 68  LAERAMRDGVGNATRARQLAAIRGFLRFLAKRHGLVPQAIAGLRGPKVVPPAPRPLTPDQ 127

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           AL +       +   +  +  R+SA+  LLYGCGLRISEAL+L   +     + L+++GK
Sbjct: 128 ALDV--TRDAGSVENSTVLALRDSALFTLLYGCGLRISEALALNLADAPRAGAGLKVRGK 185

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GDK R+VP+LP+V +AI  Y  L           PLF G RG  L+ G+ QR +R  RR 
Sbjct: 186 GDKERVVPVLPAVEQAIAAYLRLRG---GGEPDAPLFLGARGGRLDAGMAQRALRNYRRL 242

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +GLP S T H LRHSFATHLL+ G DLRSIQ +LGH  LSTTQ YT+V+S      ++E 
Sbjct: 243 VGLPESATPHALRHSFATHLLTAGADLRSIQELLGHASLSTTQRYTSVDSAR----LLET 298

Query: 314 YDQTHPSIT 322
           + + HP   
Sbjct: 299 WQKAHPRAR 307


>gi|116333414|ref|YP_794941.1| integrase [Lactobacillus brevis ATCC 367]
 gi|116098761|gb|ABJ63910.1| tyrosine recombinase XerD subunit [Lactobacillus brevis ATCC 367]
          Length = 298

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 89/311 (28%), Positives = 145/311 (46%), Gaps = 15/311 (4%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            EL  +  ++   L +E+GL+  ++ SY  + R    +LA        + + +      I
Sbjct: 2   AELATQVADFGHYLTVEQGLAANSVTSYTQELRNLGTYLAQQH-----LTSFKDADRLTI 56

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
            A++S          S+  ++S ++ F +YL +    T + + N+   K +  LP  L  
Sbjct: 57  MAYLSNLTATGKSRNSVIHAVSALRKFYRYLVQTHQMTTNPMANVAAPKHAEHLPAVLTV 116

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            +   L+          T     R+ AIL ++Y  GLR+SE + L   ++  +   ++  
Sbjct: 117 AEVDRLL-----AAPDTTTKYGLRDRAILEVMYATGLRVSELVHLKLADLHLEMGLIQTL 171

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           GKGDK RI+P+       I  Y     P  L       LF    G  L+     + I+Q 
Sbjct: 172 GKGDKERIIPIGDVATDWINRYLQTSRPVLLKQRTSPYLFLNAHGGGLSRQAIWQKIKQY 231

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                +    T HTLRHSFATH+L NG DLR +Q +LGH  ++TTQIYT+++ K     +
Sbjct: 232 VAVAQINKDVTPHTLRHSFATHILENGADLRVVQELLGHADITTTQIYTHISKKR----L 287

Query: 311 MEIYDQTHPSI 321
           +++YDQ HP  
Sbjct: 288 VKVYDQYHPRA 298


>gi|332289739|ref|YP_004420591.1| site-specific tyrosine recombinase XerD [Gallibacterium anatis
           UMN179]
 gi|330432635|gb|AEC17694.1| site-specific tyrosine recombinase XerD [Gallibacterium anatis
           UMN179]
          Length = 297

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 91/302 (30%), Positives = 149/302 (49%), Gaps = 17/302 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L + + LS+ T+ SY  D +    +L  +        T++Q+ Y +++AF+ +R  
Sbjct: 10  FLDELWLGKNLSQNTIASYRSDLKFLSEWLEKHH------LTLQQVQYLDLQAFLGERLQ 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     S  R LS ++   +YL + K   ++    + + K    LP+ L E Q   L+  
Sbjct: 64  QGYKATSYSRMLSAMRKLFQYLYQEKYREDNPCSLLTSPKLPARLPKYLTESQVTDLL-- 121

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
              +T      ++ R+ A+L LLY  GLR+SE +SLT  NI   Q  +R+ GK DK R+V
Sbjct: 122 ---NTPATENALELRDKAMLELLYATGLRVSELVSLTTNNINLQQGVVRVIGKADKERLV 178

Query: 201 PLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-L 258
           P+       + ++        L       LF   +GK +    F   I+       +   
Sbjct: 179 PIGEEANYWVQQFILYGRAELLGGQSSDVLFPSRQGKLMTRQTFWYRIKHYASLANIDAD 238

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     + +++ + H
Sbjct: 239 KLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER----LKQLHSKYH 294

Query: 319 PS 320
           P 
Sbjct: 295 PR 296


>gi|330970503|gb|EGH70569.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 299

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 91/311 (29%), Positives = 150/311 (48%), Gaps = 17/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +    +  +L  ER +S  TL++Y  D  + L +      +K  + +   L    +R+
Sbjct: 1   MDQHLDAYCMHLRSERQVSPHTLEAYRRDLGKVLAYC-----QKAQVSSWSDLDIQHLRS 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F +++  Q    RSL R LS ++ F KYL +  I        +   K    LP+ L+  +
Sbjct: 56  FTARQHQQGQSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDR 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           A  L+D  +     E  ++  R+ AIL LLY  GLR+SE   L    +      +++ GK
Sbjct: 116 AAQLLDGGV-----EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R++P+    R+A+  +  L    L       +F   +GK L P   Q  ++     
Sbjct: 171 GSKTRVLPVGSKARQALEVWLPLR--ALTNPQDDAVFVSQQGKRLGPRAIQVRLKAAGER 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L  +   H LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +
Sbjct: 229 -ELGQNLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATV 283

Query: 314 YDQTHPSITQK 324
           YD  HP   +K
Sbjct: 284 YDSAHPRAKRK 294


>gi|317121982|ref|YP_004101985.1| tyrosine recombinase XerD [Thermaerobacter marianensis DSM 12885]
 gi|315591962|gb|ADU51258.1| tyrosine recombinase XerD subunit [Thermaerobacter marianensis DSM
           12885]
          Length = 401

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 87/309 (28%), Positives = 148/309 (47%), Gaps = 16/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                +L+ L +ERGL+  TL++Y            F        +    ++ + + A++
Sbjct: 19  AALAEYLEILRVERGLAARTLEAYRR------DLADFAAFAAGRERGPEAVTRSLVMAYL 72

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
              R       ++ R L+ ++ F +YL +    ++  +  M   +    LPR ++  +  
Sbjct: 73  HHLRQAGRAHTTVARRLAALRGFFRYLVEEGRLSQDPVEGMTAPRAGRPLPRVMSVAEVE 132

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            +++               R+ A+L LLY  GLR+SE + L   +++ D   LR +GKG 
Sbjct: 133 RMLE-----VPQPPSPAGLRDRAVLELLYATGLRVSELVGLDLDDLLLDHGLLRCRGKGG 187

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K R+VP+ P   +A   Y +     L     Q  LF   RG  L+       +R+  R  
Sbjct: 188 KERVVPVAPPAVEATRIYLERGRPHLCRRPSQRALFLNHRGGRLSRQWVWHLLRRAARRA 247

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+  + + HT+RHSFATHLL+ G DLR++Q +LGH  +STTQIYT++   +    ++E Y
Sbjct: 248 GVSRAVSPHTIRHSFATHLLAGGADLRAVQELLGHADISTTQIYTHLTRHH----LLEAY 303

Query: 315 DQTHPSITQ 323
            + HP + Q
Sbjct: 304 LKAHPRLAQ 312


>gi|66043455|ref|YP_233296.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           syringae B728a]
 gi|75503929|sp|Q500B4|XERC_PSEU2 RecName: Full=Tyrosine recombinase xerC
 gi|63254162|gb|AAY35258.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 299

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 91/311 (29%), Positives = 150/311 (48%), Gaps = 17/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +    +  +L  ER +S  TL++Y  D  + L +      +K  + +   L    +R+
Sbjct: 1   MDQHLDAYCMHLRSERQVSPHTLEAYRRDLGKVLAYC-----QKAQVSSWSDLDIQHLRS 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F +++  Q    RSL R LS ++ F KYL +  I        +   K    LP+ L+  +
Sbjct: 56  FTARQHQQGQSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDR 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           A  L+D  +     E  ++  R+ AIL LLY  GLR+SE   L    +      +++ GK
Sbjct: 116 AAQLLDGGV-----EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R++P+    R+A+  +  L    L       +F   +GK L P   Q  ++     
Sbjct: 171 GSKTRVLPVGSKARQALEVWLPLR--ALTNPQDDAVFVSQQGKRLGPRAIQVRLKAAGER 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L  +   H LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +
Sbjct: 229 -ELGQNLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATV 283

Query: 314 YDQTHPSITQK 324
           YD  HP   +K
Sbjct: 284 YDSAHPRAKRK 294


>gi|163738332|ref|ZP_02145747.1| phage integrase [Phaeobacter gallaeciensis BS107]
 gi|161388253|gb|EDQ12607.1| phage integrase [Phaeobacter gallaeciensis BS107]
          Length = 311

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 125/313 (39%), Positives = 181/313 (57%), Gaps = 9/313 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++S       + WL  L   +G ++ T+ +Y  D  +FL F+  +      +  + ++S 
Sbjct: 8   LISPACRDALEQWLAGLAALQGAAENTITAYRGDVVEFLAFMTHHFGGPQGLGALAEIST 67

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++RA+++  R    G RSL R LS +KSF  +L +R+    + +L+ R+ K    LPR 
Sbjct: 68  GDMRAWMAATRATGTGARSLARKLSAVKSFYTWLAERQGFEPTAVLSARSPKFQKKLPRP 127

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L E  A  +++ V   ++  T W+ AR+ A++ LLYGCGLRISEAL LT  +     + L
Sbjct: 128 LAEDAARAVIETVEFQST--TDWVAARDVAVVTLLYGCGLRISEALGLTGADAPL-PAVL 184

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKG K RIVP+L + R A+  Y  LCP         PLFRG+RG  LN  + +  + 
Sbjct: 185 RITGKGGKERIVPVLHAARAAVDRYLRLCPHPQERAA--PLFRGVRGGALNARLIRSAMA 242

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           Q R  LGLP S T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQ YT V++ +   
Sbjct: 243 QARAQLGLPASATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAH--- 299

Query: 309 WMMEIYDQTHPSI 321
            +M++Y++ HP  
Sbjct: 300 -LMDVYNRAHPKA 311


>gi|237734604|ref|ZP_04565085.1| tyrosine recombinase xerC [Mollicutes bacterium D7]
 gi|229382424|gb|EEO32515.1| tyrosine recombinase xerC [Coprobacillus sp. D7]
          Length = 304

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 90/314 (28%), Positives = 155/314 (49%), Gaps = 16/314 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++   L    + +L  L+ +R  +  T++SY+     F  FL      + +I     +SY
Sbjct: 2   LMKTTLDNYFRQYLDYLQYQRHYADKTIESYKRQIDHFKQFLI-----EESIDDYNDVSY 56

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R +++K   + +   ++   LS ++SF  YL K ++  ++  L + + K +   P  
Sbjct: 57  AMLRGYLTKLYEKNLSKTTINHKLSALRSFFNYLLKEELINDNPFLLIESQKVAKRNPDF 116

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L  ++ L L+D++          +  RN A++ L+Y  GLR SE ++L   NI  +Q  L
Sbjct: 117 LFPEEILGLLDSI-----ETKDDLGIRNKAMMELMYASGLRCSEVVNLQLSNIDFNQMVL 171

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRY 246
            I GKG+K R VP      + +++Y      +L         +F    G PL     +  
Sbjct: 172 FIHGKGNKDRYVPFHDYAGEWLIKYIQEARENLMIKNEGHNFVFVNKFGNPLTNRGVENI 231

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           + ++ R          HT+RHSFATHLL+ G D+R++Q +LGH  LSTTQIYT+++    
Sbjct: 232 VDRIMRLYDSTKKIHPHTIRHSFATHLLNAGADIRTVQELLGHENLSTTQIYTHIS---- 287

Query: 307 GDWMMEIYDQTHPS 320
            D + E+Y + HP 
Sbjct: 288 RDHLKEVYLKAHPR 301


>gi|83644610|ref|YP_433045.1| tyrosine recombinase XerD [Hahella chejuensis KCTC 2396]
 gi|83632653|gb|ABC28620.1| tyrosine recombinase XerD [Hahella chejuensis KCTC 2396]
          Length = 284

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 94/298 (31%), Positives = 148/298 (49%), Gaps = 16/298 (5%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
            L +E+GLS+ T  SY CD  +   +L          +T+   S  ++ +F++ R  +  
Sbjct: 1   MLWLEQGLSENTRMSYRCDLLRLAEWLMGRG------RTLVDASREDLFSFLAVRMQKGA 54

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
              S  R LS ++ F +YL +  +  E   L + + K    LP A++E +   L+     
Sbjct: 55  KGASSARMLSTLRKFYRYLLREGVVQEDPTLRIEHPKVGRLLPGAISEMEVEQLL----- 109

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
                ++ I+AR+  +L +LY  GLR+SE +SL    +   Q  LR+ GKG K R+ PL 
Sbjct: 110 AEPDASQPIEARDKVMLEVLYASGLRVSELVSLRLYQVNLRQGVLRVVGKGGKERLTPLG 169

Query: 204 PSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
               + +  Y   + P  L       LF  +RG  +    F   I+      G+  + T 
Sbjct: 170 EQAVEQLEAYIKGVRPQLLAGREDGVLFPSMRGSEMTRQTFWHRIKLYASRSGISKNITP 229

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + +++ + HP 
Sbjct: 230 HTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKAR----LQQLHSRHHPR 283


>gi|77163851|ref|YP_342376.1| site-specific tyrosine recombinase XerC [Nitrosococcus oceani ATCC
           19707]
 gi|254435837|ref|ZP_05049344.1| tyrosine recombinase XerC [Nitrosococcus oceani AFC27]
 gi|76882165|gb|ABA56846.1| tyrosine recombinase XerC subunit [Nitrosococcus oceani ATCC 19707]
 gi|207088948|gb|EDZ66220.1| tyrosine recombinase XerC [Nitrosococcus oceani AFC27]
          Length = 300

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 96/307 (31%), Positives = 157/307 (51%), Gaps = 16/307 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q +  +L+ ERGLS  T+ SY  D  + + F          I   ++L    +RA +  
Sbjct: 9   IQKFFTHLQYERGLSPQTVVSYRRDLAKAIAFCGRN-----GIGNWQELDAQRVRALVVA 63

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +  RS++R LS ++SF  YL++  I   +    +   K   +LP +L+  Q   L
Sbjct: 64  HHQAGLSGRSIQRLLSALRSFYVYLQRENIVDHNPAQGISAPKGKRALPPSLDVDQTAQL 123

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++      +     +  R+ AIL L Y  GLR++E + L    +  D + +R+ GKG K 
Sbjct: 124 LN------TQPCSDLLLRDQAILELFYSSGLRLAELVGLNLSALDLDTALVRVVGKGAKT 177

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R VPL    + A+L +  +    +N   Q  +F    G+ L+P   Q+ +R      G  
Sbjct: 178 REVPLGRRAKVALLAWLPVRAGWIN-QSQEAVFITRHGRRLSPRAVQKRLRLWGLRQGFD 236

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           ++   H LRH+FA+HLL + GDLR++Q +LGH  +STTQIYT+++ ++    + +IYDQT
Sbjct: 237 VAIHPHRLRHAFASHLLESSGDLRAVQELLGHADISTTQIYTHLDFQH----LAKIYDQT 292

Query: 318 HPSITQK 324
           HP   +K
Sbjct: 293 HPRARKK 299


>gi|212702793|ref|ZP_03310921.1| hypothetical protein DESPIG_00823 [Desulfovibrio piger ATCC 29098]
 gi|212673655|gb|EEB34138.1| hypothetical protein DESPIG_00823 [Desulfovibrio piger ATCC 29098]
          Length = 312

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 89/322 (27%), Positives = 152/322 (47%), Gaps = 18/322 (5%)

Query: 2   EGNNLPEIVSFELL---KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI 58
           E + LPE     L    K+   W + L  +RGLS  T+ SY  D   F +FL     +++
Sbjct: 3   EKSVLPEATERSLQILKKQIPAWGEYLLAQRGLSMRTVVSYRQDLENFFLFL-----DEL 57

Query: 59  TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
                  L   ++  +++  R +K   R+L R LS ++ F +Y  +  +   +    + +
Sbjct: 58  DAGDKTSLDEHDLFLYLAWLRARKNAGRTLARRLSALRGFFEYTVEEGLLESNPASLLES 117

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            +    LP  L++ +   L     L      +    R+  +L +LY  GLR+SE  +L  
Sbjct: 118 PRLPQYLPEVLSKAEMDRL-----LQLPDMREKCGRRDRCLLEMLYAAGLRVSEVCNLLV 172

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
            ++   +  + + GKG K R+VPL   V   + ++      D +   +  LF    GK L
Sbjct: 173 ADVDMQRGLVLVSGKGAKDRLVPLHSLVLDLLQQWLSFWRDDFSPQSR-YLFLNRSGKGL 231

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +     + +++     G+  S + HT RHSFATHLL  G DLR++Q +LGH  +S T+IY
Sbjct: 232 SRQYVWKMVKKYALLAGIRRSISPHTFRHSFATHLLEGGADLRAVQLLLGHADISATEIY 291

Query: 299 TNVNSKNGGDWMMEIYDQTHPS 320
           T+V ++     +  ++ Q HP 
Sbjct: 292 THVQAER----LHALHRQFHPR 309


>gi|254446539|ref|ZP_05060015.1| tyrosine recombinase XerD [Verrucomicrobiae bacterium DG1235]
 gi|198260847|gb|EDY85155.1| tyrosine recombinase XerD [Verrucomicrobiae bacterium DG1235]
          Length = 309

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 92/314 (29%), Positives = 147/314 (46%), Gaps = 14/314 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++  LL+   ++L  L +E+GLS  T+++Y+ D  QFL     + E+   + + ++L+ +
Sbjct: 1   MASRLLEGVDDFLAYLTLEKGLSDNTIENYQSDLSQFLA----HVEKSSRVGSWKKLTAS 56

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +  +I         + SL R LS ++S   YL + +   +S    +   K     P  L
Sbjct: 57  HVSDWIYALSEGDYSNASLCRKLSSLRSLDAYLMRERKIDKSFTEIVVGPKLRRKAPFTL 116

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           + ++   L+          T     R+ A+L L Y  GLR+SE   L  Q I  +   L+
Sbjct: 117 SIQEVERLL-----SAPDLTTAQGLRDRAMLELFYSSGLRVSELSGLMLQQIDLELGALK 171

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           I GKG K R+ P+      AI +Y     P  +       +F   RG  ++       +R
Sbjct: 172 IYGKGSKERVCPMGRKAATAIGDYLRNGRPRFVKSKTGSAVFLSARGTAISRKTIWVLVR 231

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +  +  G+      H LRHSFATHLL+ G DLR IQ +LGH  ++TTQIYT+V      D
Sbjct: 232 KYTKAAGIDKPVKPHMLRHSFATHLLTGGADLRIIQELLGHADIATTQIYTSV----EAD 287

Query: 309 WMMEIYDQTHPSIT 322
                +D+ HP   
Sbjct: 288 RTRSAHDEFHPRSR 301


>gi|319897879|ref|YP_004136076.1| site-specific tyrosine recombinase [Haemophilus influenzae F3031]
 gi|329122492|ref|ZP_08251077.1| site-specific tyrosine recombinase XerC [Haemophilus aegyptius ATCC
           11116]
 gi|317433385|emb|CBY81765.1| site-specific tyrosine recombinase [Haemophilus influenzae F3031]
 gi|327473182|gb|EGF18604.1| site-specific tyrosine recombinase XerC [Haemophilus aegyptius ATCC
           11116]
          Length = 299

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 93/315 (29%), Positives = 154/315 (48%), Gaps = 17/315 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +L     +   L IER +S  T+ +Y+      +  LA     +  I    Q++ + +R 
Sbjct: 1   MLTALNRYWDYLRIERQMSPHTITNYQHQLDATIKILA-----QQDIHAWTQVTPSVVRF 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            +++ + Q + ++SL   LS ++ FL +L ++     +    +   K+   LP+ ++ +Q
Sbjct: 56  ILAESKKQGLKEKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGKHLPKNMDGEQ 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+       +   + ID R+ AIL L+Y  GLR+SE   L   +I      +R+ GK
Sbjct: 116 VQQLL------ANDSKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R+VP       AI E+  +    L       LF    G  ++    Q+ +      
Sbjct: 170 GNKERVVPFGRYASHAIQEWLKVR--ALFNPKDEALFVSQLGNRISHRAIQKRLETWGIR 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL      H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    + E+
Sbjct: 228 QGLNSHLNPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LSEV 283

Query: 314 YDQTHPSITQKDKKN 328
           YDQ HP   +K +K+
Sbjct: 284 YDQAHPRAKRKKQKS 298


>gi|313836787|gb|EFS74501.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL037PA2]
 gi|314929805|gb|EFS93636.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL044PA1]
 gi|314972234|gb|EFT16331.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL037PA3]
          Length = 315

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 141/314 (44%), Gaps = 10/314 (3%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E +   L    +++  +L   R  S  T++ Y  D   F+     + ++ +      ++ 
Sbjct: 12  EHLPASLTVPVEDFCDHLSALRR-SPNTIRGYRADLIDFMGHAHSHGDDALG-----KIG 65

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
            +++RA+++  R       +++R  S  + F ++     +        + +      LP 
Sbjct: 66  TSQVRAWLADTRLAGASPATMQRRWSAARVFFRWAANEGLIDCDPTAALTSANVPKRLPA 125

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L   QA  ++D  +     +     AR++AIL +LYG GLR+ E   L   ++   + T
Sbjct: 126 TLGVDQARHILDGAVAQARSDETPQGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRQT 185

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           + + GKGDK R VP+      AI  +          +    LF G RG  ++  V +R +
Sbjct: 186 VIVTGKGDKERTVPMGTPALHAIDTWLPRRAEWAGPDSGQALFLGARGGRIDQRVVRRVV 245

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
               R          H LRH+ ATHLL  G DLR++Q ILGH  L+TTQIYT+V+++   
Sbjct: 246 HAHMRSEPDSPDLGPHGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTER-- 303

Query: 308 DWMMEIYDQTHPSI 321
             +   + Q HP  
Sbjct: 304 --LRTAFRQAHPRA 315


>gi|268591702|ref|ZP_06125923.1| tyrosine recombinase XerD [Providencia rettgeri DSM 1131]
 gi|291312661|gb|EFE53114.1| tyrosine recombinase XerD [Providencia rettgeri DSM 1131]
          Length = 300

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 95/310 (30%), Positives = 155/310 (50%), Gaps = 17/310 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L    + +L  + +E+ L++ TL SY  D +    +L  +     ++Q+I      +++
Sbjct: 5   QLNPLIEQFLDTIWLEQDLAENTLASYRNDLQLLDKWLDAHQLHLESVQSI------DLQ 58

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +F ++R        S  R LS ++   +YL + KI  +     +   K    LP+ L+EK
Sbjct: 59  SFFAERIDCGYKATSSARLLSAMRRLFQYLYREKIRLDDPSAVIAAPKIPQRLPKDLSEK 118

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q   L+     +       ++ R+ A+L +LY CGLR+SE + LT  +I   Q  +R+ G
Sbjct: 119 QVEDLL-----NAPATEDALELRDKAMLEVLYACGLRVSELIGLTFSDISLRQGVIRVVG 173

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KGDK R++PL       + +Y D    DL N      LF   RG  +    F   I+   
Sbjct: 174 KGDKERLIPLGEEAIYWLEKYIDEGRPDLLNGKTSDILFPSKRGTKMTRQTFWHRIKYYA 233

Query: 252 RYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               +     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     +
Sbjct: 234 VLAHIDSELLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----L 289

Query: 311 MEIYDQTHPS 320
             +++Q HP 
Sbjct: 290 RVLHEQHHPR 299


>gi|298253373|ref|ZP_06977165.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
 gi|297532768|gb|EFH71654.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
          Length = 319

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 91/324 (28%), Positives = 164/324 (50%), Gaps = 17/324 (5%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
             NN+PE    E     Q ++ +++IERGLSK T+ +Y  D + +  +L     ++  I+
Sbjct: 10  RKNNIPE----EFALHIQRFIAHIDIERGLSKKTVSAYASDLQDYTCWL----YDERKIK 61

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            I  +S  +I ++I       +G R++ R L+ I  + +++             ++  K+
Sbjct: 62  DIATISQLDIESYIRTLNELGLGTRTVARRLASIHEWHRFMLAHGDIQADVSAQVKAPKQ 121

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           ++ LP  L+ ++   +++         +  I  R++A+L  LY  G RISEA+ +  ++I
Sbjct: 122 ADYLPDVLSIEEVNRVIEA--AGNFGSSDAISIRDTALLEFLYATGARISEAVGVKFEDI 179

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL---FRGIRGKPL 238
             ++S +++ GKG K R+VP+     +A+  Y +    +L L  +  L   F   RG  L
Sbjct: 180 DLNESVVKLTGKGSKQRLVPIGGCAVRALRNYMEKSRPELALKGKRELHTIFLNKRGNAL 239

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +       + Q      L      HTLRHS ATHL++ G D+R++Q +LGH  ++TTQIY
Sbjct: 240 SRQSAWAIVTQAGERAKLDKPLHPHTLRHSLATHLIAGGADVRTVQELLGHASVTTTQIY 299

Query: 299 TNVNSKNGGDWMMEIYDQTHPSIT 322
           T+++     D ++E Y  +HP   
Sbjct: 300 THISP----DALVEAYVMSHPRAK 319


>gi|170741374|ref|YP_001770029.1| integrase family protein [Methylobacterium sp. 4-46]
 gi|259710434|sp|B0UNY7|XERC_METS4 RecName: Full=Tyrosine recombinase xerC
 gi|168195648|gb|ACA17595.1| integrase family protein [Methylobacterium sp. 4-46]
          Length = 320

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 125/314 (39%), Positives = 180/314 (57%), Gaps = 8/314 (2%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           + ++ +   +WL  L  ER  S  T+++Y  D RQFL   A    +   I ++  L   +
Sbjct: 13  AADVREAVASWLTLLARERRFSPNTVEAYARDLRQFLAHRARAGTQP-DIPSLVALKPRD 71

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +RAF++ RR + IG RSL R+L+ ++SF ++L++    T S +  +R+ K    LPR L 
Sbjct: 72  LRAFMAARRAEGIGGRSLMRALASLRSFARHLEREGHGTVSALSAVRSPKVERRLPRPLP 131

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLR 189
              A+ L    +        W+ AR++A+L LLYG GLRI EAL L  ++  +    TL 
Sbjct: 132 VAAAVALASPDIRAGEDRPDWVLARDAAVLALLYGAGLRIGEALGLRRKDAPVGGLDTLT 191

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           I GKG K R+VP++  V+ A+ EY   CP+ L  +   PLF G +G PL+P V Q  +  
Sbjct: 192 IVGKGQKTRMVPVIAPVQAALAEYLAACPYALAPD--GPLFVGQKGGPLSPRVVQLAVAS 249

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           LR  LGLP S T H LRHSFATHLL+  GDLR+IQ +LGH  L+TTQIYT V+S      
Sbjct: 250 LRGALGLPDSATPHALRHSFATHLLARQGDLRAIQDLLGHASLATTQIYTKVDSAR---- 305

Query: 310 MMEIYDQTHPSITQ 323
           +M  ++  HP   +
Sbjct: 306 LMSAFEAAHPRAGR 319


>gi|114331692|ref|YP_747914.1| tyrosine recombinase XerD [Nitrosomonas eutropha C91]
 gi|114308706|gb|ABI59949.1| tyrosine recombinase XerD [Nitrosomonas eutropha C91]
          Length = 305

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 95/306 (31%), Positives = 152/306 (49%), Gaps = 13/306 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +   L +E GLS+ TL SY  D  Q + +L   +  + T   +  ++  ++ AF+S 
Sbjct: 11  LDEFTDVLWLEDGLSRNTLASYRADLMQLVEWL---SRREQTNGLLNDVTQADLLAFLSD 67

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  Q     +  R+L+ I+ F +YL ++        +N+ + K S  LP +L E +   L
Sbjct: 68  RIAQGAKASTASRALACIRRFYRYLLRQGKILIDPAVNIDSPKVSRHLPVSLAESEVEAL 127

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +       S   + +  R+ A+L +LY  GLR+SE +SL    +  D   +RI GKG+K 
Sbjct: 128 L-----AVSDIKQPLGLRDRAMLEILYAAGLRVSELVSLAISQVRQDMGVVRILGKGNKE 182

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R++PL       +  Y     P  L       LF   RG  +    F   I++  R  G+
Sbjct: 183 RLIPLGDEALYWLDLYLREARPILLAGKHSNMLFVTTRGDAMTRQAFWYLIKRHARQAGI 242

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     + +++ +
Sbjct: 243 VKQLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LRQLHAR 298

Query: 317 THPSIT 322
            HP   
Sbjct: 299 HHPRGK 304


>gi|89074452|ref|ZP_01160929.1| tyrosine recombinase [Photobacterium sp. SKA34]
 gi|89049740|gb|EAR55290.1| tyrosine recombinase [Photobacterium sp. SKA34]
          Length = 302

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 85/318 (26%), Positives = 162/318 (50%), Gaps = 16/318 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++   L +  + + + L  ER LS  T Q+Y+    +    L      ++++   +Q+  
Sbjct: 1   MLPRSLEQPLERFYEYLRSERELSLHTQQNYKRQLTRIAEQLV-----ELSVDNWQQVDA 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R   SK     +   SL   LS ++SF  +L  + +   +    +   +K+  LP+ 
Sbjct: 56  GWVRQIASKGMRDGLKASSLAMRLSALRSFFDFLVHQNVLKANPAKGVAAPRKARPLPKN 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+  +   L+D       ++   +  R+ A++ L+YG GLR++E + +  ++I   +  L
Sbjct: 116 LDVDEMNQLLDV------NDDDPLAIRDRAMMELMYGAGLRLAELVGIDVRHISLSKGDL 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R+ GKGDK R+VP     R+ + ++  L   ++ L  +  LF    G  ++    Q+ + 
Sbjct: 170 RVIGKGDKERVVPFSGLAREWVAKWLKLRD-NIALAEEPALFVSKLGTRISTRNVQKRMA 228

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +  +   +      H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++   
Sbjct: 229 EWGQKQAVSSHINPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH--- 285

Query: 309 WMMEIYDQTHPSITQKDK 326
            + ++YD+ HP   +++K
Sbjct: 286 -LAKVYDEAHPRAKKRNK 302


>gi|307300528|ref|ZP_07580308.1| tyrosine recombinase XerD [Sinorhizobium meliloti BL225C]
 gi|306904694|gb|EFN35278.1| tyrosine recombinase XerD [Sinorhizobium meliloti BL225C]
          Length = 311

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 92/315 (29%), Positives = 154/315 (48%), Gaps = 16/315 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+ +  ERG +  TLQSYE D      FL            +   S  ++R+++S 
Sbjct: 9   VEAFLEMMSAERGAAANTLQSYERDLEDARSFLRSRG------TGLTDASADDLRSYLSH 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q     S  R LS ++ F K+L    + T+     +   KK+ +LP+ L+ +    L
Sbjct: 63  LAGQGFKASSQARRLSALRQFYKFLYAEGLRTDDPTGILDAPKKARTLPKTLSIEDVTRL 122

Query: 138 VDNVLLHTSHETKWIDARNS--AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +          +  + A+    A++ LLY  G+R+SE +SL    +  +   L I+GKG+
Sbjct: 123 IGQAEAEAKSGSDDVMAKLRMHALIELLYATGMRVSELVSLPASVLAQNGRFLIIRGKGN 182

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYL 254
           K R+VPL  +  +A+  Y +    +   +    LF    +   L   VF R ++ L    
Sbjct: 183 KERLVPLSQAAIRAMRAYGEALQEESADSP--WLFPSNGKSGHLPRQVFARDLKSLAARA 240

Query: 255 GLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           G+ ++    H LRH+FA+HLL+NG DLR++Q +LGH  +STTQIYT+V  +     + ++
Sbjct: 241 GIRVAAIWPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEER----LHDL 296

Query: 314 YDQTHPSITQKDKKN 328
               HP   Q  K++
Sbjct: 297 VQNHHPLAKQAKKQD 311


>gi|297242750|ref|ZP_06926688.1| site-specific recombinase XerD [Gardnerella vaginalis AMD]
 gi|296888961|gb|EFH27695.1| site-specific recombinase XerD [Gardnerella vaginalis AMD]
          Length = 319

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 90/324 (27%), Positives = 163/324 (50%), Gaps = 17/324 (5%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
             NN+PE    E     Q ++ +++IERGLSK T+ +Y  D + +  +L     ++  I+
Sbjct: 10  RKNNIPE----EFALHIQRFIAHIDIERGLSKKTVSAYASDLQDYTCWL----YDERKIK 61

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            I  +S  +I ++I       +G R++ R L+ I  + +++             ++  K+
Sbjct: 62  DITTISQLDIESYIRTLNELGLGTRTVARRLASIHEWHRFMLAHGDIQADVSAQVKAPKQ 121

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           ++ LP  L+ ++   +++         +  I  R++A+L  LY  G RISEA+ +  ++I
Sbjct: 122 ADYLPDVLSIEEVNRVIEA--AGNFGSSDAISIRDTALLEFLYATGARISEAVGVKFEDI 179

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL---FRGIRGKPL 238
             ++S +++ GKG K R+VP+     +A+  Y +    +L    +  L   F   RG  L
Sbjct: 180 DLNESVVKLTGKGSKQRLVPIGGCAVRALRNYMEKSRPELASKGKRELHTIFLNKRGNAL 239

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +       + Q      L      HTLRHS ATHL++ G D+R++Q +LGH  ++TTQIY
Sbjct: 240 SRQSAWAIVTQAGERAKLDKPLHPHTLRHSLATHLIAGGADVRTVQELLGHASVTTTQIY 299

Query: 299 TNVNSKNGGDWMMEIYDQTHPSIT 322
           T+++     D ++E Y  +HP   
Sbjct: 300 THISP----DALVEAYVMSHPRAK 319


>gi|294500946|ref|YP_003564646.1| tyrosine recombinase XerC [Bacillus megaterium QM B1551]
 gi|294350883|gb|ADE71212.1| tyrosine recombinase XerC [Bacillus megaterium QM B1551]
          Length = 300

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 96/307 (31%), Positives = 156/307 (50%), Gaps = 17/307 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             ++L+ L+IE+  SK T+  YE D   F+ F+     ++  IQ ++ ++Y + R F+++
Sbjct: 8   LNSFLEYLQIEKNYSKYTVDCYEKDIGIFMSFM-----QEEQIQNLQSVTYADARLFLTR 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              ++   RS+ R +S +++F +YL + ++  ++    +   KK    PR L E++ + L
Sbjct: 63  LYEKQYSKRSMSRKISCLRTFYRYLNREELVEDNPFALVTLPKKEERNPRFLYEEEIVKL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L T      +  RN ++L LLY  G+R+SE  S+   +I     TL + GKG K 
Sbjct: 123 FQMNDLTTP-----LGQRNQSLLELLYATGIRVSECASIKLSDIDFSLQTLLVYGKGKKQ 177

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           R VP     + A+  Y D     L     +    LF   +G PL     +  I QL +  
Sbjct: 178 RYVPFGCYAKGALRVYIDNGRKLLLKKAPSDTHSLFLNYKGTPLTDRGIRLVIDQLVKKT 237

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
              +  + H LRH+FATH+L+ G DLR++Q +LGH  LSTTQIYT+V      D +  +Y
Sbjct: 238 AENIHISPHVLRHTFATHMLNEGADLRTVQEMLGHEHLSTTQIYTHVT----KDRLKAVY 293

Query: 315 DQTHPSI 321
              HP  
Sbjct: 294 MNHHPRA 300


>gi|120600077|ref|YP_964651.1| tyrosine recombinase XerD [Shewanella sp. W3-18-1]
 gi|146291994|ref|YP_001182418.1| tyrosine recombinase XerD [Shewanella putrefaciens CN-32]
 gi|120560170|gb|ABM26097.1| tyrosine recombinase XerD [Shewanella sp. W3-18-1]
 gi|145563684|gb|ABP74619.1| tyrosine recombinase XerD [Shewanella putrefaciens CN-32]
          Length = 300

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 94/304 (30%), Positives = 146/304 (48%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L +L   +GLS  TL +Y  D R F      +        T+ + +  ++R++++ 
Sbjct: 11  IDAFLDDLWSSKGLSDNTLSAYRTDLRHFDRHQQRHG------TTLLEATAADVRSYLAL 64

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  Q     S  R LS ++ F  YL   K      +  + + K +  LP +L+E Q   L
Sbjct: 65  RLEQHFARTSSARLLSSLRRFYTYLLLTKQIAVDPMALIESPKLTRHLPHSLSESQVDRL 124

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +        +    ++ R+ A+L LLY  GLR+SE + LT + +   Q  +RI GKG K 
Sbjct: 125 LSE-----PNVDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKE 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       +  Y      +L        +F   RG+ +    F   I+      G+
Sbjct: 180 RLVPLGELAVTEVEAYLKFARQELLGHKQSDVVFPSNRGQMMTRQTFWHRIKLYALRAGI 239

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ Q
Sbjct: 240 ETALSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHV----ARARLQELHQQ 295

Query: 317 THPS 320
            HP 
Sbjct: 296 HHPR 299


>gi|71897645|ref|ZP_00679890.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71732548|gb|EAO34601.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
          Length = 277

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 86/295 (29%), Positives = 142/295 (48%), Gaps = 19/295 (6%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  TL +Y  D    + +       +  +  +  L   +++AF+S    + +  +SL+R 
Sbjct: 2   SSHTLDAYRRDIGALIAW-----GGQQAVGEVVALDRAQLQAFVSAEHRRGLSAKSLQRR 56

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           LS  + F  +L KR     +    +R  K    LPR L+  +A++ V             
Sbjct: 57  LSACRGFYTWLVKRGHIAVNPAAGLRAPKALRKLPRILDADEAVSFVQIP------TDTP 110

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           +  R+ A+L L Y  GLR+SE   L    +  D   + + GKG + R+VP+      A+ 
Sbjct: 111 LGLRDRALLELFYSSGLRLSELCGLRWDGLDLDAGLVSVLGKGSRQRVVPVGSYALSALR 170

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           E+            Q P+F G  G P++    Q  I+QL +  G+      H LRHSFA+
Sbjct: 171 EW----CASSGGGAQQPVFPGRYGGPISARAVQVRIKQLAQRQGMAKHVHPHMLRHSFAS 226

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
           HLL + GDLR +Q +LGH  ++TTQIYT+++ +    ++ ++YD  HP   +K +
Sbjct: 227 HLLESSGDLRGVQELLGHADITTTQIYTHLDFQ----YLSKVYDAAHPRARRKAR 277


>gi|154251910|ref|YP_001412734.1| integrase family protein [Parvibaculum lavamentivorans DS-1]
 gi|154155860|gb|ABS63077.1| integrase family protein [Parvibaculum lavamentivorans DS-1]
          Length = 326

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 128/309 (41%), Positives = 183/309 (59%), Gaps = 9/309 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
             S +   E +NW  +L  ER +S+ TL +Y  D  +F  FL  +     T++ + +L  
Sbjct: 23  PASGDARTEIRNWYSHLMGERRMSEATLINYHRDLTRFFEFLVDHLGGPATLKDLGRLEL 82

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            + RAF+S+RR   +  RSL R LS ++SF ++L +  + + ++   +R+ K  +++P+ 
Sbjct: 83  RDFRAFVSQRRKDGLQSRSLARMLSSVRSFFRFLDRTHVLSNASATALRSPKLPHAIPKP 142

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L    A  L+D      +HE  WI AR+ A+L LLYGCGLR+SEAL L        +  L
Sbjct: 143 LTAAGARELLDE--AEIAHEEPWIGARDIAVLTLLYGCGLRVSEALGLNRSEAPL-KDVL 199

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKG K R+VP+LP+ R A+ +Y  LCP  L  +   PLF G RG  L     +  + 
Sbjct: 200 RITGKGGKERVVPVLPAARMAVDDYLRLCPHGLAKD--DPLFVGSRGARLGQRQVRETMT 257

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +LRR LGLP S T H LRHSFATHLL+ GGDLRSIQ +LGH  LSTTQ+YT V++     
Sbjct: 258 RLRRRLGLPESATPHALRHSFATHLLAGGGDLRSIQELLGHASLSTTQMYTEVDAAR--- 314

Query: 309 WMMEIYDQT 317
            ++E+YD+ 
Sbjct: 315 -LLEVYDKA 322


>gi|257784507|ref|YP_003179724.1| integrase family protein [Atopobium parvulum DSM 20469]
 gi|257473014|gb|ACV51133.1| integrase family protein [Atopobium parvulum DSM 20469]
          Length = 305

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 83/311 (26%), Positives = 147/311 (47%), Gaps = 20/311 (6%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           + + +++ L   R LS+ TL+SY+ D   F  + +           + Q+ +  +R +++
Sbjct: 10  QVEQFIEYLHKVRNLSENTLRSYQTDLLSFAQWCSREN------VDLTQVDHKNLRLYLA 63

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             +  +   ++L R LS ++ F K++++ K+      L + N +   +LP  + +     
Sbjct: 64  YLKQAQYSAKTLNRHLSALRGFYKWMQREKLIATDPALALSNPRAPRNLPHTMTDSDVNR 123

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+++  + T+        R+ A L  LY  G RISE  +L  + +     T+R+ GKG K
Sbjct: 124 LLESCDVSTAA-----GLRDRAFLEFLYATGARISEVATLRLEQVDLQNGTVRLFGKGSK 178

Query: 197 IRIVPLLPSVRKAILEYYDLCPF-----DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            RIVPL  S  + + +Y           D    +   LF  +RG  ++    ++      
Sbjct: 179 ERIVPLYESAIEWLKKYLRSSRPTLLLKDKTGRVHSALFISVRGNNMSADSLRKVFSSYL 238

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              GL  S + H +RH++AT LL  G DLR +Q +LGH  LSTTQ+YT+++     D + 
Sbjct: 239 TAAGLDSSLSPHAMRHTYATELLGGGADLRIVQELLGHESLSTTQVYTHLS----VDRLK 294

Query: 312 EIYDQTHPSIT 322
           E     HP   
Sbjct: 295 EAAKAAHPRSK 305


>gi|256391647|ref|YP_003113211.1| tyrosine recombinase XerD [Catenulispora acidiphila DSM 44928]
 gi|256357873|gb|ACU71370.1| tyrosine recombinase XerD [Catenulispora acidiphila DSM 44928]
          Length = 306

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 87/316 (27%), Positives = 145/316 (45%), Gaps = 20/316 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           VS +L    +  L++L +ERGLS  TL +Y  D  ++ +FL     +         +   
Sbjct: 4   VSDDLDSRVKAHLEHLSVERGLSANTLAAYRRDLSRYRVFL-----DTRDRANFSDIDRA 58

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++ AF++  +       S  R++S ++   ++             ++   +    LP+AL
Sbjct: 59  DVSAFLASLQDG--AASSAARTMSAVRGLHRFAVAEGWVGVDVSDDVAPPQVPMRLPKAL 116

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
                  L+       +   + +  R+ A+L  LY  G R+SEA++L   +I  +  T+ 
Sbjct: 117 PLDDIERLL-----AATEIDEPMALRDRALLEFLYSTGARVSEAVALDVDDIDREDRTVV 171

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL----PLFRGIRGKPLNPGVFQR 245
           + GKG K R+VP+     +A+ +Y      +L    +      LF   RG  L       
Sbjct: 172 LDGKGGKQRLVPVGSYACRAVDDYLVRLRPELTRKARSGNGGALFLNARGGRLTRQGAWT 231

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +  +   +GL    + HTLRHSFATHLL  G D+R++Q +LGH   +TTQIYT V    
Sbjct: 232 VLGAVAERVGLAGRVSPHTLRHSFATHLLDGGADIRTVQELLGHSSATTTQIYTRVT--- 288

Query: 306 GGDWMMEIYDQTHPSI 321
             D + E+Y  +HP  
Sbjct: 289 -VDRLREVYATSHPRA 303


>gi|163839570|ref|YP_001623975.1| XerD/RipX family integrase/recombinase [Renibacterium salmoninarum
           ATCC 33209]
 gi|162953046|gb|ABY22561.1| integrase/recombinase (XerD/RipX family) [Renibacterium
           salmoninarum ATCC 33209]
          Length = 312

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 92/324 (28%), Positives = 143/324 (44%), Gaps = 30/324 (9%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +  + +LQ+L +ERGL+  TL +Y  D  ++  FLA        ++T  Q+S   +  
Sbjct: 1   MTRALREYLQHLAVERGLAANTLAAYRRDLTRYTNFLASQ-----GVRTPEQISRKNVTD 55

Query: 74  FISKRRTQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           F     T       +G RS  R +  ++   K+      TT      +        LP+A
Sbjct: 56  FAQALSTGSDGATALGVRSAARCIVALRGMHKFWALEATTTADPASEVHPPMAGRRLPKA 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST- 187
           ++  +   +++      S        R+ A+L  LY  G RISEA+ L   +++   S  
Sbjct: 116 ISVAEVTKILE-----ASGSDTATGLRDRALLEFLYSTGARISEAIGLDVDDVVGANSVG 170

Query: 188 --------LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKP 237
                   +R+ GKG K RIVPL     +AI  Y       L+        LF  +RG  
Sbjct: 171 NDQSGPAVVRLFGKGSKERIVPLGSYGARAIEAYLVRGRPLLSATGKATPALFLNVRGGR 230

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+       ++       +    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQ+
Sbjct: 231 LSRQSAWAILKTAAEKAEISKVVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQV 290

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSI 321
           YT V      D + E+Y   HP  
Sbjct: 291 YTLVT----ADTLREVYASAHPRA 310


>gi|119946910|ref|YP_944590.1| tyrosine recombinase XerD [Psychromonas ingrahamii 37]
 gi|119865514|gb|ABM04991.1| tyrosine recombinase XerD subunit [Psychromonas ingrahamii 37]
          Length = 298

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 98/308 (31%), Positives = 154/308 (50%), Gaps = 19/308 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L +L +ERGLS+ TL+SY  D R   IFLA        + ++   S  ++  + S 
Sbjct: 6   IDQFLDSLWLERGLSQNTLESYRHDLRLVEIFLATR------LVSLCSASSLDLIDYFSC 59

Query: 78  RR--TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           R    ++  + S  R +S ++ + +YL + KI  +     + + K    LP++L+E +  
Sbjct: 60  RLSGEKEYKNASTARLMSALRRYYQYLCREKIREDDPSAKLESPKIIKPLPKSLSESEV- 118

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
               + LL +   T  +  R+ A+L LLY  GLR+SE + L+ + I   Q  +R+ GKGD
Sbjct: 119 ----DGLLSSPDLTDSVQFRDKAMLELLYATGLRVSELVGLSMEEINLKQGVVRVTGKGD 174

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K R+VPL       +  Y +    DL        LF   R   +    F   I+   +  
Sbjct: 175 KTRLVPLGEEAIYWVERYIEEARPDLLKGQSSDVLFPSRRATVMVRQTFWHRIKFYAQLC 234

Query: 255 GLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           G+     + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT++      D + E+
Sbjct: 235 GIDKEALSPHVLRHAFATHLLNYGADLRVVQMLLGHSNLSTTQIYTHIAQ----DRLKEL 290

Query: 314 YDQTHPSI 321
           + + HP  
Sbjct: 291 HQEHHPRA 298


>gi|15608839|ref|NP_216217.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           H37Rv]
 gi|15841158|ref|NP_336195.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           CDC1551]
 gi|31792887|ref|NP_855380.1| site-specific tyrosine recombinase XerD [Mycobacterium bovis
           AF2122/97]
 gi|121637608|ref|YP_977831.1| site-specific tyrosine recombinase XerD [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148661498|ref|YP_001283021.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           H37Ra]
 gi|148822907|ref|YP_001287661.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           F11]
 gi|167969182|ref|ZP_02551459.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           H37Ra]
 gi|215403996|ref|ZP_03416177.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           02_1987]
 gi|215411348|ref|ZP_03420156.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           94_M4241A]
 gi|215427023|ref|ZP_03424942.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           T92]
 gi|215430593|ref|ZP_03428512.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           EAS054]
 gi|215445888|ref|ZP_03432640.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           T85]
 gi|218753409|ref|ZP_03532205.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           GM 1503]
 gi|219557623|ref|ZP_03536699.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           T17]
 gi|224990083|ref|YP_002644770.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253799261|ref|YP_003032262.1| integrase [Mycobacterium tuberculosis KZN 1435]
 gi|254231896|ref|ZP_04925223.1| hypothetical protein TBCG_01654 [Mycobacterium tuberculosis C]
 gi|254364540|ref|ZP_04980586.1| hypothetical integrase/recombinase [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254550710|ref|ZP_05141157.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260200764|ref|ZP_05768255.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           T46]
 gi|260204970|ref|ZP_05772461.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           K85]
 gi|289443158|ref|ZP_06432902.1| tyrosine recombinase XerD [Mycobacterium tuberculosis T46]
 gi|289554527|ref|ZP_06443737.1| integrase [Mycobacterium tuberculosis KZN 605]
 gi|289569749|ref|ZP_06449976.1| integrase [Mycobacterium tuberculosis T17]
 gi|289574368|ref|ZP_06454595.1| integrase [Mycobacterium tuberculosis K85]
 gi|289745862|ref|ZP_06505240.1| tyrosine recombinase xerD [Mycobacterium tuberculosis 02_1987]
 gi|289750256|ref|ZP_06509634.1| integrase [Mycobacterium tuberculosis T92]
 gi|289753791|ref|ZP_06513169.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           EAS054]
 gi|289757810|ref|ZP_06517188.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           T85]
 gi|289761856|ref|ZP_06521234.1| tyrosine recombinase xerD [Mycobacterium tuberculosis GM 1503]
 gi|294993190|ref|ZP_06798881.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           210]
 gi|297634253|ref|ZP_06952033.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           KZN 4207]
 gi|297731240|ref|ZP_06960358.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           KZN R506]
 gi|298525199|ref|ZP_07012608.1| integrase/recombinase XerD [Mycobacterium tuberculosis 94_M4241A]
 gi|306775886|ref|ZP_07414223.1| integrase [Mycobacterium tuberculosis SUMu001]
 gi|306779704|ref|ZP_07418041.1| integrase [Mycobacterium tuberculosis SUMu002]
 gi|306784437|ref|ZP_07422759.1| integrase [Mycobacterium tuberculosis SUMu003]
 gi|306788804|ref|ZP_07427126.1| integrase [Mycobacterium tuberculosis SUMu004]
 gi|306793139|ref|ZP_07431441.1| integrase [Mycobacterium tuberculosis SUMu005]
 gi|306797519|ref|ZP_07435821.1| integrase [Mycobacterium tuberculosis SUMu006]
 gi|306803400|ref|ZP_07440068.1| integrase [Mycobacterium tuberculosis SUMu008]
 gi|306807982|ref|ZP_07444650.1| integrase [Mycobacterium tuberculosis SUMu007]
 gi|306967799|ref|ZP_07480460.1| integrase [Mycobacterium tuberculosis SUMu009]
 gi|306971995|ref|ZP_07484656.1| integrase [Mycobacterium tuberculosis SUMu010]
 gi|307079707|ref|ZP_07488877.1| integrase [Mycobacterium tuberculosis SUMu011]
 gi|307084286|ref|ZP_07493399.1| integrase [Mycobacterium tuberculosis SUMu012]
 gi|313658572|ref|ZP_07815452.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           KZN V2475]
 gi|54039885|sp|P67637|XERD_MYCBO RecName: Full=Tyrosine recombinase xerD
 gi|54042782|sp|P67636|XERD_MYCTU RecName: Full=Tyrosine recombinase xerD
 gi|2326744|emb|CAB10958.1| PROBABLE INTEGRASE/RECOMBINASE [Mycobacterium tuberculosis H37Rv]
 gi|13881378|gb|AAK46009.1| integrase/recombinase XerD [Mycobacterium tuberculosis CDC1551]
 gi|31618477|emb|CAD96395.1| PROBABLE INTEGRASE/RECOMBINASE [Mycobacterium bovis AF2122/97]
 gi|121493255|emb|CAL71726.1| Probable integrase/recombinase [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124600955|gb|EAY59965.1| hypothetical protein TBCG_01654 [Mycobacterium tuberculosis C]
 gi|134150054|gb|EBA42099.1| hypothetical integrase/recombinase [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148505650|gb|ABQ73459.1| tyrosine recombinase [Mycobacterium tuberculosis H37Ra]
 gi|148721434|gb|ABR06059.1| hypothetical integrase/recombinase [Mycobacterium tuberculosis F11]
 gi|224773196|dbj|BAH26002.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253320764|gb|ACT25367.1| integrase [Mycobacterium tuberculosis KZN 1435]
 gi|289416077|gb|EFD13317.1| tyrosine recombinase XerD [Mycobacterium tuberculosis T46]
 gi|289439159|gb|EFD21652.1| integrase [Mycobacterium tuberculosis KZN 605]
 gi|289538799|gb|EFD43377.1| integrase [Mycobacterium tuberculosis K85]
 gi|289543503|gb|EFD47151.1| integrase [Mycobacterium tuberculosis T17]
 gi|289686390|gb|EFD53878.1| tyrosine recombinase xerD [Mycobacterium tuberculosis 02_1987]
 gi|289690843|gb|EFD58272.1| integrase [Mycobacterium tuberculosis T92]
 gi|289694378|gb|EFD61807.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           EAS054]
 gi|289709362|gb|EFD73378.1| tyrosine recombinase xerD [Mycobacterium tuberculosis GM 1503]
 gi|289713374|gb|EFD77386.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           T85]
 gi|298494993|gb|EFI30287.1| integrase/recombinase XerD [Mycobacterium tuberculosis 94_M4241A]
 gi|308215637|gb|EFO75036.1| integrase [Mycobacterium tuberculosis SUMu001]
 gi|308327355|gb|EFP16206.1| integrase [Mycobacterium tuberculosis SUMu002]
 gi|308330798|gb|EFP19649.1| integrase [Mycobacterium tuberculosis SUMu003]
 gi|308334621|gb|EFP23472.1| integrase [Mycobacterium tuberculosis SUMu004]
 gi|308338408|gb|EFP27259.1| integrase [Mycobacterium tuberculosis SUMu005]
 gi|308342131|gb|EFP30982.1| integrase [Mycobacterium tuberculosis SUMu006]
 gi|308345601|gb|EFP34452.1| integrase [Mycobacterium tuberculosis SUMu007]
 gi|308349918|gb|EFP38769.1| integrase [Mycobacterium tuberculosis SUMu008]
 gi|308354539|gb|EFP43390.1| integrase [Mycobacterium tuberculosis SUMu009]
 gi|308358516|gb|EFP47367.1| integrase [Mycobacterium tuberculosis SUMu010]
 gi|308362455|gb|EFP51306.1| integrase [Mycobacterium tuberculosis SUMu011]
 gi|308366075|gb|EFP54926.1| integrase [Mycobacterium tuberculosis SUMu012]
 gi|323719791|gb|EGB28905.1| integrase [Mycobacterium tuberculosis CDC1551A]
 gi|326903315|gb|EGE50248.1| integrase [Mycobacterium tuberculosis W-148]
 gi|328459013|gb|AEB04436.1| integrase [Mycobacterium tuberculosis KZN 4207]
          Length = 311

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 89/318 (27%), Positives = 145/318 (45%), Gaps = 19/318 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L  + Q +L +L IERG++  TL SY  D R++   L     E+  I  + ++   ++  
Sbjct: 4   LALQLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHL-----EERGITDLAKVGEHDVSE 58

Query: 74  FISKRR-------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           F+   R       T  +   S  R+L  ++   ++     +        +R    S  LP
Sbjct: 59  FLVALRRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLP 118

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           ++L   + L+L++        +   +  RN A+L LLY  G RISEA+ L   +I     
Sbjct: 119 KSLTIDEVLSLLEGAGGDKPSDG-PLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHAR 177

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQ 244
           ++ ++GKG K R+VP+      A+  Y      DL    +    +F   RG  L+     
Sbjct: 178 SVLLRGKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAW 237

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + ++      G+    + H LRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V   
Sbjct: 238 QVLQDAAERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVT-- 295

Query: 305 NGGDWMMEIYDQTHPSIT 322
                + E++   HP   
Sbjct: 296 --VHALREVWAGAHPRAR 311


>gi|330444894|ref|ZP_08308549.1| tyrosine recombinase XerC [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489204|dbj|GAA03046.1| tyrosine recombinase XerC [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 297

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 89/313 (28%), Positives = 159/313 (50%), Gaps = 16/313 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +  + + + L  ER LS  T Q+Y+    +    L      ++ +++ +Q+    +R 
Sbjct: 1   MEQPLERFYEYLRSERELSLHTQQNYKRQLTRIAEQLV-----ELKVESWQQVDAGWVRQ 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             SK     +   SL   LS ++SF  +L  + +   +    +   +KS  LP+ L+  +
Sbjct: 56  IASKGMRDGLKASSLAMRLSALRSFFDFLVHQNVLKANPAKGVAAPRKSRPLPKNLDVDE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D       +E   +  R+ A++ L+YG GLR+SE + +  +NI   +  LR+ GK
Sbjct: 116 MNQLLDV------NEDDPLAIRDRAMMELMYGAGLRLSELVGIDLRNISLSKGDLRVIGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GDK RIVP     R+ + ++  L       + Q  LF    G  ++    Q+ + +  + 
Sbjct: 170 GDKERIVPFSGLAREWVAKWLKLRDSIAQADEQ-ALFVSKLGHRISTRNVQKRMAEWGQK 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +      H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++    + ++
Sbjct: 229 QAVSSHINPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LAKV 284

Query: 314 YDQTHPSITQKDK 326
           YD+ HP   +++K
Sbjct: 285 YDEAHPRAKKRNK 297


>gi|221195834|ref|ZP_03568887.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626]
 gi|221184308|gb|EEE16702.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626]
          Length = 311

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 97/317 (30%), Positives = 167/317 (52%), Gaps = 16/317 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L++  + +L  + +ERGLS  TL +YE D   +  +L+        I     ++   + 
Sbjct: 2   DLVQALKEFLAYVAVERGLSHNTLDAYERDLNGYSDWLSSC-----GIHNPCAVTQQILE 56

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            +I++ R   +   S++R  + I++F ++L   +I   S   ++ +  +   LP  ++ +
Sbjct: 57  TYIAELREIGLAPASVERHTAAIRNFHRFLVAEQICATSPADDLSSTARPLRLPDVISRE 116

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +A  L+D        E      R+ AIL +LYGCGLR+SE   L  + ++ D+  LR+ G
Sbjct: 117 KAAELLDQ-----PFERSPRGIRDKAILEVLYGCGLRVSEVSGLEVRGVLLDEELLRVFG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLR 251
           KG K R+VP+  + ++A+ EY +       ++ Q P +F   RG  L+       +    
Sbjct: 172 KGSKERVVPIFGTAQEALREYLEGARGAFLIHGQSPYVFLNRRGGRLSRQWIHTSVAAYG 231

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R +G+  +   HTLRHSFATHLL  G DLRS+Q +LGH  +STTQ+YT+V+  +    + 
Sbjct: 232 RAVGIE-NLHPHTLRHSFATHLLEGGADLRSVQELLGHVDISTTQLYTHVDRSH----VR 286

Query: 312 EIYDQTHPSITQKDKKN 328
           E+Y   HP   +  +K+
Sbjct: 287 EVYLSAHPRAHEAFRKD 303


>gi|220904455|ref|YP_002479767.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868754|gb|ACL49089.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 310

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 86/301 (28%), Positives = 138/301 (45%), Gaps = 15/301 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQTIRQLSYTEIRAFISKRR 79
           W   L  +RGLS  T+ SY  D   F +F     + E ++ Q        EI  +++  R
Sbjct: 21  WQDYLLAQRGLSPQTVASYGQDLENFFLFRQELAQGEAVSPQP----DEQEIFLYLAWLR 76

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            ++   R+L R LS +++F  +  +      +    + N K    LP  L+  +  +L+ 
Sbjct: 77  ARQNTGRTLARRLSALRAFFDFAVQENAIKNNPAQLLDNPKLPQHLPEVLSRDEMESLL- 135

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                          R+  IL LLY  GLR+SE   L   ++   +  +R+ GKG K R+
Sbjct: 136 ----ARPDLRDRGGQRDRCILELLYAAGLRVSELCDLCLPDLDLQRGLVRVFGKGAKERL 191

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPL   + + +LE Y              LF    G+ L      + +++     G+   
Sbjct: 192 VPLHD-LMQNMLENYIRDWRPAFSPTGNQLFVNRSGRALTRQYIWKMVKKYALEAGIRRP 250

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HT RHSFATHLL  G DLR++Q +LGH  +S T+IYT+V ++     +  I+ + HP
Sbjct: 251 VSPHTFRHSFATHLLEGGADLRAVQLLLGHADISATEIYTHVQAER----LRSIHRKFHP 306

Query: 320 S 320
            
Sbjct: 307 R 307


>gi|315089284|gb|EFT61260.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL072PA1]
          Length = 315

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 83/312 (26%), Positives = 147/312 (47%), Gaps = 10/312 (3%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +   L    +++  +L   R  S  T++ Y  D    +     + ++     T+ ++  +
Sbjct: 14  LPMSLTVPVEDFCGHLSALRR-SPNTIRGYRADLIDLMGHAHSHGDD-----TLGRIGTS 67

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++RA+++  R       +++R  S  + F ++     + +      + + K    LP  L
Sbjct: 68  QVRAWLADTRVAGASAATMQRRWSAARVFFRWAANEGLISADPTTALNSAKVPKRLPATL 127

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              QA  ++D  +    H+     AR++AIL +LYG GLR+ E   L   ++   + T++
Sbjct: 128 GVDQARHILDEAVAQARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVK 187

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKGDK R VP+     +AI  +       +  +    LF G RG+ ++  V +R +  
Sbjct: 188 VTGKGDKERTVPMGAPALRAIDTWLPRREEWVGPHSGQALFLGARGRRIDQRVVRRVVHT 247

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             R          H LRH+ ATHLL  G DLR++Q ILGH  L+TTQIYT+V+++     
Sbjct: 248 HLRAEPDSPDLGPHGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTER---- 303

Query: 310 MMEIYDQTHPSI 321
           +   + Q HP  
Sbjct: 304 LRTAFRQAHPRA 315


>gi|229846398|ref|ZP_04466506.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           7P49H1]
 gi|229810491|gb|EEP46209.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           7P49H1]
          Length = 297

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 151/308 (49%), Gaps = 17/308 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L     +L    IE+GLS+ T+QSY  D      +L           ++  L   +++ F
Sbjct: 4   LALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWL------DKNDLSLETLDAVDLQGF 57

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + +R  +     S  R LS ++   +YL + K   +     + + K  + LP+ L E+Q 
Sbjct: 58  LGERLEKGYKVTSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQV 117

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
                + LL+T      ++ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKG
Sbjct: 118 -----SDLLNTPDVDVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKG 172

Query: 195 DKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K RIVP+       + ++     P  LN      +F   R + +    F   ++     
Sbjct: 173 NKERIVPMGEEAAYWVRQFMLYGRPVLLNRQSSDVVFPSQRAQQMTRQTFWHRVKHYAIL 232

Query: 254 LGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             +     + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  
Sbjct: 233 ADIDADALSPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER----LKR 288

Query: 313 IYDQTHPS 320
           ++++ HP 
Sbjct: 289 LHERFHPR 296


>gi|328907661|gb|EGG27425.1| site-specific tyrosine recombinase XerC [Propionibacterium sp. P08]
          Length = 310

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 141/314 (44%), Gaps = 10/314 (3%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E +   L    +++  +L   R  S  T++ Y  D   F+     + ++ +      ++ 
Sbjct: 7   EHLPASLTVPVEDFCDHLSALRR-SPNTIRGYRADLIDFMGHAHSHGDDALG-----KIG 60

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
            +++RA+++  R       +++R  S  + F ++     +        + +      LP 
Sbjct: 61  TSQVRAWLADTRLAGASPATMQRRWSAARVFFRWAANEGLIDCDPTAALTSANVPKRLPA 120

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L   QA  ++D  +     +     AR++AIL +LYG GLR+ E   L   ++   + T
Sbjct: 121 TLGVDQARHILDGAVAQARSDETPQGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRQT 180

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           + + GKGDK R VP+      AI  +          +    LF G RG  ++  V +R +
Sbjct: 181 VIVTGKGDKERTVPMGTPALHAIDTWLPRRAEWAGPDSGQALFLGARGGRIDQRVVRRVV 240

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
               R          H LRH+ ATHLL  G DLR++Q ILGH  L+TTQIYT+V+++   
Sbjct: 241 HAHMRSEPDSPDLGPHGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTER-- 298

Query: 308 DWMMEIYDQTHPSI 321
             +   + Q HP  
Sbjct: 299 --LRTAFRQAHPRA 310


>gi|194014676|ref|ZP_03053293.1| tyrosine recombinase XerC [Bacillus pumilus ATCC 7061]
 gi|194013702|gb|EDW23267.1| tyrosine recombinase XerC [Bacillus pumilus ATCC 7061]
          Length = 305

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 153/308 (49%), Gaps = 18/308 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +++ L+IE+  S LT+  Y     +F+ F+         I    ++SY + R ++++   
Sbjct: 11  FIEYLQIEKNYSALTISGYTEAIEEFVRFMNVQ-----GIDGFEEVSYQDTRIYLTEAYE 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  R++ + +S ++SF K+L + ++  E+  L +   K+   +P  L E++   L   
Sbjct: 66  KGLTRRTISKKVSALRSFYKFLLREQLVKENPFLLVSLPKQDKRIPSFLYEEELKELF-- 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                S  +  +  RN AIL LLY  G+R+SE  SL   ++     T+ + GKG K R V
Sbjct: 124 ---TVSDVSTPLGQRNQAILELLYATGMRVSELCSLKESDLDLSMDTVLVHGKGSKQRYV 180

Query: 201 PLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           P      +A++ Y +     L    N      +F   RG PL     +  + +L +    
Sbjct: 181 PFGSYAHEALITYLEDGRLKLKAKGNDRADAYVFLNQRGAPLTDRGVRFILTELMKKASG 240

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            L    H LRH+FATHLL+ G DLRS+Q +LGH  LS+TQ+YT+V+     D + + Y  
Sbjct: 241 TLHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVS----KDSLRKTYMS 296

Query: 317 THPSITQK 324
            HP   ++
Sbjct: 297 HHPRAFKR 304


>gi|307246735|ref|ZP_07528805.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|307255720|ref|ZP_07537524.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|307260172|ref|ZP_07541882.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|306852435|gb|EFM84670.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|306861397|gb|EFM93387.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|306865818|gb|EFM97696.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
          Length = 336

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 87/315 (27%), Positives = 158/315 (50%), Gaps = 17/315 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L  + + +   L IE+  S+ TL +Y+         L+     +  I T ++++   +R 
Sbjct: 38  LYLQTKPYWDYLRIEKQASQHTLSNYQRQLLAVSDMLS-----QAGISTWQEVNSATVRW 92

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            I++   Q +G +S+   L  ++ +  YL +++  + +  + ++  K S  LP+ ++ +Q
Sbjct: 93  IIAQSNKQGLGAKSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQ 152

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           A  L+      TS   +  D R+ A++ L+Y  GLR+SE   L   ++      +R+ GK
Sbjct: 153 AEQLL------TSDSHEPSDLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGK 206

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K RIVP+     +A+  +  +            +F   RG  L+    Q  +++    
Sbjct: 207 GNKERIVPIGSKALEALNRWLAVRNQ--FKPQDNAVFLNKRGGRLSHRSIQLVMQKWGEK 264

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL      H LRHSFATH+L   GDLR++Q +LGH  L+TTQIYT+++ ++    + +I
Sbjct: 265 QGLESHLHPHKLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQH----LAKI 320

Query: 314 YDQTHPSITQKDKKN 328
           YD  HP   +K + +
Sbjct: 321 YDAAHPRAKRKKQDD 335


>gi|116671017|ref|YP_831950.1| tyrosine recombinase XerC subunit [Arthrobacter sp. FB24]
 gi|116611126|gb|ABK03850.1| tyrosine recombinase XerC subunit [Arthrobacter sp. FB24]
          Length = 308

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 91/322 (28%), Positives = 156/322 (48%), Gaps = 15/322 (4%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+  +LP      L    + + + LE ER  S  T+++Y  D    L   A         
Sbjct: 1   MDTPDLP----PALADAARGFGRYLEGERARSPHTVRAYLSDVHSLLTVAAAD-----GA 51

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             +  +    +R ++  +   ++   +L R  +  +SF  +  + ++      L ++  K
Sbjct: 52  TDLDGIELATLRRWLGAQSEARMSRSTLARRAATARSFTSWAVREELLGSDPALRLKAPK 111

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +  SLP  L+++Q L +VD  L   + +   +  R+ A++ LLY  G+R+ E   +   +
Sbjct: 112 RERSLPGVLHQQQVLRVVD-HLKAAAEDGGPLALRDRAMVELLYATGVRVGELAGMDVDD 170

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLN 239
           +  D+ TLR+ GKG+K R VP       A+ ++       L ++   P LF G RG+ ++
Sbjct: 171 LDPDRRTLRVVGKGNKERTVPYGLPAAVAVDDWLRRGRPVLAVDGSGPALFLGARGRRVD 230

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               +  ++ +   LG   +T  H LRHS ATHLL  G DLR++Q ILGH  L+TTQIYT
Sbjct: 231 QRQVRTVVKDVLDALGDTAATGPHALRHSAATHLLDGGADLRAVQEILGHSSLATTQIYT 290

Query: 300 NVNSKNGGDWMMEIYDQTHPSI 321
           +V+ +     + + Y Q HP  
Sbjct: 291 HVSVER----LRQSYQQAHPRA 308


>gi|295706292|ref|YP_003599367.1| tyrosine recombinase XerC [Bacillus megaterium DSM 319]
 gi|294803951|gb|ADF41017.1| tyrosine recombinase XerC [Bacillus megaterium DSM 319]
          Length = 300

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 96/307 (31%), Positives = 156/307 (50%), Gaps = 17/307 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             ++L+ L+IE+  SK T+  YE D   F+ F+     ++  IQ ++ ++Y + R F+++
Sbjct: 8   LNSFLEYLQIEKNYSKYTVDCYEKDIGIFMSFM-----QEEQIQNLQSVTYADARLFLTR 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              ++   RS+ R +S +++F +YL + ++  ++    +   KK    PR L E++ + L
Sbjct: 63  LYEKQYSKRSMSRKISCLRTFYRYLNREELVEDNPFALVTLPKKEERNPRFLYEEEIVKL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L T      +  RN ++L LLY  G+R+SE  S+   +I     TL + GKG K 
Sbjct: 123 FQMNDLTTP-----LGQRNQSLLELLYATGIRVSECSSIKLSDIDFSLQTLLVYGKGKKQ 177

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           R VP     + A+  Y D     L     +    LF   +G PL     +  I QL +  
Sbjct: 178 RYVPFGCYAKGALRVYIDNGRKLLLKKAPSDTHSLFLNYKGTPLTDRGIRLVIDQLVKKT 237

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
              +  + H LRH+FATH+L+ G DLR++Q +LGH  LSTTQIYT+V      D +  +Y
Sbjct: 238 AENIHISPHVLRHTFATHMLNEGADLRTVQEMLGHEHLSTTQIYTHVT----KDRLKAVY 293

Query: 315 DQTHPSI 321
              HP  
Sbjct: 294 MNHHPRA 300


>gi|157368433|ref|YP_001476422.1| site-specific tyrosine recombinase XerC [Serratia proteamaculans
           568]
 gi|157320197|gb|ABV39294.1| tyrosine recombinase XerC [Serratia proteamaculans 568]
          Length = 303

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 79/315 (25%), Positives = 149/315 (47%), Gaps = 17/315 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
            ++  L +    +L+ L++ER LS LT  SY    +  +        ++I +     L  
Sbjct: 3   PLAASLQQPVDAFLRYLKVERQLSPLTQLSYSRQLQALMA-----LAQEIGVTEWPLLDA 57

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++R   ++ +   +   SL   LS ++SFL +   + +   +    +R  +    LP+ 
Sbjct: 58  AKVRQLAARSKRAGLQSSSLALRLSALRSFLDWQVSQGMLIANPAKGIRTPRSGRHLPKN 117

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++  +   L++  L         +  R+ A+L ++YG GLR+SE + L  +++      +
Sbjct: 118 IDVDEMNQLLNIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGLDCRHVDLAAGEI 171

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +P+  +    +  +      DL       +F   +GK ++    Q+   
Sbjct: 172 WVLGKGSKERKLPVGRTAVTWLEHWL--AMRDLFGPSDDAMFLSNQGKRISTRNVQKRFA 229

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     G+      H LRHSFATH+L + GDLR++Q +LGH  L+TTQIYT+++ ++   
Sbjct: 230 EWGVKQGVNSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH--- 286

Query: 309 WMMEIYDQTHPSITQ 323
            +  +YD  HP   +
Sbjct: 287 -LANVYDAAHPRAKR 300


>gi|218778262|ref|YP_002429580.1| tyrosine recombinase XerC [Desulfatibacillum alkenivorans AK-01]
 gi|218759646|gb|ACL02112.1| tyrosine recombinase XerC [Desulfatibacillum alkenivorans AK-01]
          Length = 315

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 92/310 (29%), Positives = 150/310 (48%), Gaps = 14/310 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF---YTEEKITIQTIRQLSYTEIRAF 74
             ++L++L  ER  S  T  +Y  D R+F  ++A      E       + ++    IR +
Sbjct: 15  IDSFLESLAAERRYSPATCLAYGKDLREFFSYVAESGLQGEISPENADVERVDNLAIRGY 74

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +     +     ++ R LS ++SF ++L+KR     +   ++   K+  ++   L   +A
Sbjct: 75  LGFLHKKNEK-STMARKLSSLRSFYRFLEKRGRVAVNPAQSVVTPKRKKTVAAHLTVDEA 133

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D++L     +     AR+ A+   LY  G+R+SE   L    +     TLR+ GKG
Sbjct: 134 FALLDSIL-----DDSLAGARDRAMFECLYSTGIRVSELAGLNMGRVNFSGKTLRVLGKG 188

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           DK RIVP+     + I  Y D    +   N     +F    G  L     +R + ++ R 
Sbjct: 189 DKERIVPVGAKALEHIKAYRDRLAVEGPKNPDPEAVFLNKNGGRLTTRSIRRILEKIVRD 248

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +GL    + H LRH+FATH+L NG DLRS+Q +LGH  +STT  YT+V+     D +M  
Sbjct: 249 MGLNRPLSPHGLRHTFATHMLDNGADLRSVQELLGHASISTTGRYTHVS----IDRLMAA 304

Query: 314 YDQTHPSITQ 323
           YD+ HP   +
Sbjct: 305 YDKAHPRGEK 314


>gi|86131894|ref|ZP_01050491.1| phage integrase family protein [Dokdonia donghaensis MED134]
 gi|85817716|gb|EAQ38890.1| phage integrase family protein [Dokdonia donghaensis MED134]
          Length = 299

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 96/305 (31%), Positives = 153/305 (50%), Gaps = 16/305 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N+   L IERGLS  T+ +Y  D ++   +L      + +I  + Q++  +++ FI    
Sbjct: 9   NYKNYLRIERGLSDNTIDNYARDLKKLTRYLEQL---ENSINPL-QITREDLQEFI-YTI 63

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +++  RS  R +SG+K F  YL      T++ I  + + K    LP  L+E++   L+D
Sbjct: 64  AKEVQARSQARVISGLKGFFNYLVFEDYRTDNPIDLIESPKIGRKLPDTLSEEEIDALID 123

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            + L      +     N A+L  LY CGLR++E +SL   ++  ++  + + GKGDK R 
Sbjct: 124 AIDLGKPQGER-----NRAMLETLYSCGLRVTELISLKLSDLYFEEGFINVVGKGDKQRF 178

Query: 200 VPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           VP+    +K I  Y +      D+       LF   RG+ L   +    I+ L     + 
Sbjct: 179 VPISEHTQKYINIYRNELRNHIDVKPEHVDILFLNRRGRQLTRAMIFTIIKDLAIKADIK 238

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + + HT RHSFATHLL NG DLRSIQ +LGH  ++TT+IY +V+  +    M     + 
Sbjct: 239 KNISPHTFRHSFATHLLQNGADLRSIQQMLGHESITTTEIYMHVDRNDLAREMA----KF 294

Query: 318 HPSIT 322
           HP   
Sbjct: 295 HPRGK 299


>gi|238855698|ref|ZP_04645995.1| tyrosine recombinase XerC [Lactobacillus jensenii 269-3]
 gi|260664453|ref|ZP_05865305.1| tyrosine recombinase XerC [Lactobacillus jensenii SJ-7A-US]
 gi|282932212|ref|ZP_06337659.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1]
 gi|313472147|ref|ZP_07812639.1| tyrosine recombinase XerC [Lactobacillus jensenii 1153]
 gi|238831683|gb|EEQ24023.1| tyrosine recombinase XerC [Lactobacillus jensenii 269-3]
 gi|239529518|gb|EEQ68519.1| tyrosine recombinase XerC [Lactobacillus jensenii 1153]
 gi|260561518|gb|EEX27490.1| tyrosine recombinase XerC [Lactobacillus jensenii SJ-7A-US]
 gi|281303662|gb|EFA95817.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1]
          Length = 302

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 92/309 (29%), Positives = 147/309 (47%), Gaps = 14/309 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   L  ERG S LTL +Y  D +Q   F              +Q++  +I  +I+ 
Sbjct: 7   LEQFKDYLAYERGYSNLTLTAYLNDLKQAEDFWKNNG----GFNGFKQVTSRDIEIYIAS 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             +  +   S  R LS +KSF K+L +R +        +   +KS  LP    E +   +
Sbjct: 63  LASTGLSQASQARKLSSLKSFYKFLTRRNLVEVDPTQTVSIHRKSKKLPEFFYEPEIKKV 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D++       +  +  RN A+  L Y  G+R+SE  +LT + I  D   + + GKG+K 
Sbjct: 123 LDSLSA-----SDKLTVRNKAMFELFYATGMRVSEVSNLTLEQIDFDVQMILVHGKGNKD 177

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R VP     +  +L Y +      N +     +F   RG  L     +  +R++ +  GL
Sbjct: 178 RYVPFGDYAKACLLRYLNEARRLFNPDDDNHYVFLDNRGHQLTSRGIEYIMRKVFQKGGL 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             +   H LRH+FAT +L+NG DLRS+Q +LGH  LSTTQIYT+V  +     + + Y++
Sbjct: 238 SANVHPHELRHTFATQMLNNGADLRSVQELLGHESLSTTQIYTHVTMER----LQKDYEK 293

Query: 317 THPSITQKD 325
             P    KD
Sbjct: 294 FFPRNKGKD 302


>gi|160884146|ref|ZP_02065149.1| hypothetical protein BACOVA_02123 [Bacteroides ovatus ATCC 8483]
 gi|156110488|gb|EDO12233.1| hypothetical protein BACOVA_02123 [Bacteroides ovatus ATCC 8483]
          Length = 319

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 91/312 (29%), Positives = 151/312 (48%), Gaps = 17/312 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + Q L++E+ LS  TL +Y  D  + + FL    +EK+ I     +  ++++ F + 
Sbjct: 17  IRKYQQYLKLEKSLSPNTLDAYLTDLYKLINFLE---QEKVGILD---VCLSDLQHFAAG 70

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I  RS  R LSGIKSF ++L             +   K    LP  L  ++   +
Sbjct: 71  LHDIGIHPRSQARILSGIKSFFRFLIIEDYLEADPSELLEGPKIGFKLPEVLTVEEIDRI 130

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +          +K    RN AIL  LY CGLR+SE ++L   ++  D+  ++++GKG K 
Sbjct: 131 I-----SAVDRSKAEGQRNRAILETLYSCGLRVSELVTLKLSDLYFDEGFIKVEGKGSKQ 185

Query: 198 RIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLG 255
           R+VP+ P     I  Y       ++    +  +F   R    L+  +    I++L    G
Sbjct: 186 RLVPISPRAINEIKLYIPDRNQIEVKKGHEDFVFVSQRRGKGLSRIMIFHMIKELAEKAG 245

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++       ++E   
Sbjct: 246 ITKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIE--- 302

Query: 316 QTHPSITQKDKK 327
             HP   +  K+
Sbjct: 303 -HHPRNIKYRKE 313


>gi|74318546|ref|YP_316286.1| tyrosine recombinase XerC [Thiobacillus denitrificans ATCC 25259]
 gi|74058041|gb|AAZ98481.1| tyrosine recombinase XerC [Thiobacillus denitrificans ATCC 25259]
          Length = 294

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 93/311 (29%), Positives = 143/311 (45%), Gaps = 17/311 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +     +LQ+L  ER LS  TL +Y  D                  + +  L+  +IR  
Sbjct: 1   MNPFAPYLQHLAAERRLSAHTLSAYARDLENLARL--------TDGKPLDTLTSHDIRGA 52

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I K R   +   S+ R LS  + F  +  +R    ++    +R  K S +LP  L+    
Sbjct: 53  IVKLRAGGLAAASVARQLSSWRGFYAFACRRLGYPDNPCAGLRPPKASRALPDILSPDAC 112

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D        +   +  R+ A+  L Y  GLR+SE + +   ++       R+ GKG
Sbjct: 113 ARLLD----APDGDEDLLATRDRAMFELFYSSGLRLSELVGIDLPDLDLASGEARVTGKG 168

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K R+VP+      AI  +  L    L       LF G RG  L P   Q  + +  R  
Sbjct: 169 KKTRLVPVGRQAVAAITAWLPLR-LTLVRTPTEALFVGQRGARLTPRNVQLRLARWARAS 227

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           GL      H LRH+FATH+L + GDLR++Q +LGH  +STTQ+YT+++ ++    + + Y
Sbjct: 228 GLGQHVHPHMLRHAFATHVLQSSGDLRAVQEMLGHASISTTQVYTHLDWQH----LAKAY 283

Query: 315 DQTHPSITQKD 325
           DQ HP   +KD
Sbjct: 284 DQAHPRARKKD 294


>gi|289426394|ref|ZP_06428137.1| phage integrase, N-terminal SAM domain protein [Propionibacterium
           acnes SK187]
 gi|289153122|gb|EFD01840.1| phage integrase, N-terminal SAM domain protein [Propionibacterium
           acnes SK187]
 gi|313773500|gb|EFS39466.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL074PA1]
 gi|313807979|gb|EFS46460.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL087PA2]
 gi|313811552|gb|EFS49266.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL083PA1]
 gi|313819548|gb|EFS57262.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL046PA2]
 gi|313822129|gb|EFS59843.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL036PA1]
 gi|313823637|gb|EFS61351.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL036PA2]
 gi|313825961|gb|EFS63675.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL063PA1]
 gi|313831292|gb|EFS69006.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL007PA1]
 gi|313834903|gb|EFS72617.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL056PA1]
 gi|314924714|gb|EFS88545.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL036PA3]
 gi|314962115|gb|EFT06216.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL002PA2]
 gi|314974168|gb|EFT18264.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL053PA1]
 gi|314976542|gb|EFT20637.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL045PA1]
 gi|314979003|gb|EFT23097.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL072PA2]
 gi|314984361|gb|EFT28453.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL005PA1]
 gi|314986551|gb|EFT30643.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL005PA2]
 gi|314990910|gb|EFT35001.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL005PA3]
 gi|315081228|gb|EFT53204.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL078PA1]
 gi|315083594|gb|EFT55570.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL027PA2]
 gi|315087111|gb|EFT59087.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL002PA3]
 gi|315095307|gb|EFT67283.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL038PA1]
 gi|327328430|gb|EGE70192.1| putative tyrosine recombinase XerC [Propionibacterium acnes
           HL096PA2]
 gi|327329704|gb|EGE71460.1| putative tyrosine recombinase XerC [Propionibacterium acnes
           HL096PA3]
 gi|327444217|gb|EGE90871.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL043PA2]
 gi|327444904|gb|EGE91558.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL043PA1]
 gi|327446389|gb|EGE93043.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL013PA2]
 gi|328752379|gb|EGF65995.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL020PA1]
 gi|328760018|gb|EGF73600.1| putative tyrosine recombinase XerC [Propionibacterium acnes
           HL099PA1]
 gi|332675950|gb|AEE72766.1| tyrosine recombinase XerC [Propionibacterium acnes 266]
          Length = 315

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 83/312 (26%), Positives = 147/312 (47%), Gaps = 10/312 (3%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +   L    +++  +L   R  S  T++ Y  D    +     + ++     T+ ++  +
Sbjct: 14  LPMSLTVPVEDFCGHLSALRR-SPNTIRGYRADLIDLMGHAHSHGDD-----TLGRIGTS 67

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++RA+++  R       +++R  S  + F ++     + +      + + K    LP  L
Sbjct: 68  QVRAWLADTRVAGASAATMQRRWSAARVFFRWAANEGLISADPTTALNSAKVPKRLPATL 127

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              QA  ++D  +    H+     AR++AIL +LYG GLR+ E   L   ++   + T++
Sbjct: 128 GVDQARHILDEAVAQARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVK 187

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKGDK R VP+     +AI  +       +  +    LF G RG+ ++  V +R +  
Sbjct: 188 VTGKGDKERTVPMGAPALRAIDTWLPRREEWVGPHSGQALFLGARGRRIDQRVVRRVVHT 247

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             R          H LRH+ ATHLL  G DLR++Q ILGH  L+TTQIYT+V+++     
Sbjct: 248 HLRAEPDSPDLGPHGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTER---- 303

Query: 310 MMEIYDQTHPSI 321
           +   + Q HP  
Sbjct: 304 LRTAFRQAHPRA 315


>gi|171910181|ref|ZP_02925651.1| hypothetical protein VspiD_03395 [Verrucomicrobium spinosum DSM
           4136]
          Length = 318

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 97/304 (31%), Positives = 156/304 (51%), Gaps = 18/304 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  +E+ER  S  TL++Y          ++ + + +    T   L+  + R ++ ++ 
Sbjct: 31  DFLTFMEVERSASPKTLENYRH-------AMSTFRKSQPACMTWESLTPDDFRLYLYEQM 83

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
             ++G  +++   + ++SF K+L +R+   ++ +L ++  K    LP  L   Q  TL++
Sbjct: 84  KAELGRATIRLHFAALRSFFKFLTRRRGLVKNPLLEVQLPKPEKKLPVVLTLSQVETLLN 143

Query: 140 NVL--LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
             L          W   R++AIL L Y  G+RISE  SL  +++     TLR+ GKG K 
Sbjct: 144 LPLNTPREKQAPAWAPERDAAILELFYSTGVRISELASLNVEDVDVYSETLRVIGKGRKE 203

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RI P+     +A+  Y              PLFR   GK +        + +  +  GLP
Sbjct: 204 RICPVGGPAIRAMQRYQSRLGV-----YSGPLFRSKVGKRMTNQAINNVVEKYWKLSGLP 258

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           +  T H LRHSFATHLL+NG DLRS+Q++LGH  LSTTQIYT+V ++     M E+Y+  
Sbjct: 259 VQVTPHKLRHSFATHLLNNGADLRSVQTLLGHASLSTTQIYTHVTTER----MKEVYEDA 314

Query: 318 HPSI 321
           HP  
Sbjct: 315 HPRA 318


>gi|192362212|ref|YP_001983742.1| tyrosine recombinase XerC [Cellvibrio japonicus Ueda107]
 gi|190688377|gb|ACE86055.1| tyrosine recombinase XerC [Cellvibrio japonicus Ueda107]
          Length = 313

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 84/328 (25%), Positives = 147/328 (44%), Gaps = 22/328 (6%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M    LP        +    +   +  E+  S  T  +Y  D  +F  +          I
Sbjct: 1   MNETPLP------FAEPLAAFYTYMRSEKQFSPHTQSNYARDLEKFQRYC-----RDAGI 49

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           Q + ++    +R  ++    Q +  +SL+R LS ++ F +Y  +    + +    +   K
Sbjct: 50  QQLTEVDARAVRMAVASLHRQGLAGKSLQRWLSSLRGFFQYAIRHHWMSINPADGIAAPK 109

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LP+ L+  Q    V            +I  R+ A+L L+Y  GLR++E  SL   +
Sbjct: 110 TPKKLPKTLDVDQTAQFV------AVEGDDFIHKRDRALLELIYSSGLRLAEVTSLNLGD 163

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I    + + + GKG K R +P+      A+ ++            +  LF   RGK ++ 
Sbjct: 164 IDWGDAMVTVTGKGSKTRTLPVGSVAIAALKDWLSQR-EQYAPASEPALFITQRGKRISH 222

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              Q  ++QL    G+      H LRHSFA+H+L + GDLR +Q +LGH  +STTQIYT+
Sbjct: 223 RAVQLRLQQLSVQQGMDNPVHPHMLRHSFASHMLESSGDLRLVQELLGHANISTTQIYTH 282

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           ++ ++    + ++YD+ HP   +K   +
Sbjct: 283 LDFQH----LAKVYDKAHPRAGRKKSSD 306


>gi|85712976|ref|ZP_01044015.1| Site-specific recombinase [Idiomarina baltica OS145]
 gi|85693214|gb|EAQ31173.1| Site-specific recombinase [Idiomarina baltica OS145]
          Length = 301

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 93/303 (30%), Positives = 148/303 (48%), Gaps = 15/303 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + ++++L +  G+S+ T  +Y  D ++F  FLA +         + Q++ T ++ ++  
Sbjct: 13  IEQFVEHLWLAHGVSENTQAAYRSDLKKFCEFLAQHR------LGLHQVTSTVVQDYLLW 66

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           RR+Q +  RS  R LS +K    Y  K        I  ++  K S ++P +L E   L+L
Sbjct: 67  RRSQGLSPRSTSRFLSAMKKLTPYALKSGWFVTDPIAKLKRPKMSPAVPHSLTESDVLSL 126

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D            I  R+ A+L +LY  GLR++E + L    +   Q  +R+ GKGDK 
Sbjct: 127 LD-----APDVDTPIGLRDRAMLEVLYATGLRVTELVRLQYDQVSLAQGLVRVVGKGDKE 181

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VPL     + +  Y       L+      +F   RG  L    F   IR       + 
Sbjct: 182 RLVPLGEEAIEWLSRYMKSGRPVLSERQSGWVFITQRGTLLTRQAFWYRIRTYAEQAQIN 241

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT V  +     + +++   
Sbjct: 242 SHLSPHTLRHAFATHLLNHGADLRVLQMLLGHSDLSTTQIYTQVAKER----LQQMHATF 297

Query: 318 HPS 320
           HP 
Sbjct: 298 HPR 300


>gi|169350488|ref|ZP_02867426.1| hypothetical protein CLOSPI_01256 [Clostridium spiroforme DSM 1552]
 gi|169292808|gb|EDS74941.1| hypothetical protein CLOSPI_01256 [Clostridium spiroforme DSM 1552]
          Length = 302

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 96/313 (30%), Positives = 158/313 (50%), Gaps = 14/313 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L  E + + Q L +E+GLSK T+ +Y  D  QF      Y +    I  I  ++   +R 
Sbjct: 3   LKDEIEEYKQYLIVEKGLSKNTINAYIKDLNQF----ESYLDHNFQITKINDIAKEHVRL 58

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +I +  ++KI   S+ R L  ++ F  +  K  +   + + +    K    LP  L++++
Sbjct: 59  YIKEL-SKKISATSINRKLVSLRMFFTFATKETVIDTNIMSDFDLPKIDKKLPIVLSKEE 117

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D++ ++       I +RN  +  L+Y  GLR+SE  +LT  ++  +   L+I GK
Sbjct: 118 MQELLDSIEIN-----DHISSRNRCMFELMYATGLRVSELTNLTISSLNINMGYLKIIGK 172

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GDK RIVPL    R  + +Y      +        LF    G  L+       ++Q+   
Sbjct: 173 GDKERIVPLSNMARNILNDYLKHYRNEFIKKDSPLLFFNNHGNKLSREECYIILKQIIER 232

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    + HT+RHSFATHLL NG DLRSIQ +LGH  +STT IYT+++++     + + 
Sbjct: 233 TTINKKISPHTIRHSFATHLLENGADLRSIQELLGHSNISTTTIYTHISNQ----KIKKE 288

Query: 314 YDQTHPSITQKDK 326
           Y   HP + +K+K
Sbjct: 289 YQLFHPRVKKKNK 301


>gi|303236823|ref|ZP_07323402.1| tyrosine recombinase XerD [Prevotella disiens FB035-09AN]
 gi|302482991|gb|EFL46007.1| tyrosine recombinase XerD [Prevotella disiens FB035-09AN]
          Length = 318

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 93/304 (30%), Positives = 153/304 (50%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + + L++E+  S  TL +Y  D  + L +LA    EKI  +   +     I  F + 
Sbjct: 22  LRKYQRYLKLEKAYSANTLDAYMRDVEKLLKYLAN---EKINPE---EAKLENIENFAAA 75

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                IG RSL R LSG++ F +YL             + + K+   LP  L+ ++  +L
Sbjct: 76  VGDLGIGARSLARILSGVRQFFRYLVLEGYIEADPTELLESPKQPQHLPEVLSTEEVDSL 135

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            + + L     +KW   RN AI+ +L+ CGLR+SE  +L   N+  D+  +R+ GKG K 
Sbjct: 136 ENAIDL-----SKWEGHRNKAIIEVLFSCGLRVSELTNLKLSNLYADEQFVRVMGKGSKE 190

Query: 198 RIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+ P   K +  ++       +    +  +F   RG  L   +    I++  +  G+
Sbjct: 191 RLVPISPRALKELNFWFIDRNQMKIKEGEEDFVFLNRRGAHLTRTMILIMIKKYAQEAGI 250

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++      ++E    
Sbjct: 251 KKTISPHTLRHSFATALLEGGADLRAIQAMLGHESIGTTEIYTHIDTSTLRQEILE---- 306

Query: 317 THPS 320
            HP 
Sbjct: 307 HHPR 310


>gi|300781243|ref|ZP_07091097.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030]
 gi|300532950|gb|EFK54011.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030]
          Length = 298

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 88/302 (29%), Positives = 146/302 (48%), Gaps = 16/302 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL +L +ERGLS  TL +Y  D  +++ +L     E      +  ++ +++  +++  R 
Sbjct: 10  WLDHLAVERGLSANTLSNYRRDVDRYVTWL-----ESAGKTDLNSVTASDLGDYVADLRR 64

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +   S  R+L   +   K+              +   K    LP  L+ ++   L+D 
Sbjct: 65  GGLAASSAGRALVVARGLHKFATVEGAVAADVAAGVSPPKTGEKLPDTLSIEEVGLLLDA 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIR 198
               T       D R+ A+L +LY  G R+SE L L   +++  +D + +++ GKG+K R
Sbjct: 125 CPTDTPA-----DLRDKALLEVLYATGARVSEVLGLVVDDVVGLEDGTFIKVTGKGNKQR 179

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVP+  + R A+  Y       L+      LF   RG  L+       I++     G+  
Sbjct: 180 IVPVGSAARDAVEAYLVRGRPALSKGKTHALFLNKRGGALSRQSAWTVIKEAAGRAGVDK 239

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HTLRHSFATHLL  G D+R++Q +LGH  ++TTQIYT+V  +N    + E++   H
Sbjct: 240 HISPHTLRHSFATHLLEGGADVRTVQELLGHASVTTTQIYTHVTPEN----LREVWRTAH 295

Query: 319 PS 320
           P 
Sbjct: 296 PR 297


>gi|329571616|gb|EGG53297.1| tyrosine recombinase XerC [Enterococcus faecalis TX1467]
          Length = 298

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 98/324 (30%), Positives = 163/324 (50%), Gaps = 29/324 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ME  N PE+           + + L +ERG S+ T ++Y+ D + F  FL     + +T+
Sbjct: 1   MEEKNWPEL-----------FARYLIVERGYSEKTKKAYQEDIQHFFSFLKTSGNDYLTV 49

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           + +      ++RA++S+   Q+    S+ R ++ ++SF ++L K +   E+    +   K
Sbjct: 50  EHL------DVRAYLSELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKK 103

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K   LPR   EK+   L +     ++   + +D RN A+L +LYG G+R+SE  +LT   
Sbjct: 104 KQLRLPRFFYEKEMDALFE-----SAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDA 158

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKP 237
           +    S L + GKG+K R VP     + A+ +Y +     L    Q     +F    G+ 
Sbjct: 159 VDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENSRALLMTKYQKKHPYVFVNHHGEQ 218

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           + P   +  + QL +   L      H LRH+FATHLL+NG D+R++Q +LGH  LSTTQI
Sbjct: 219 ITPTGIEYVLNQLIKKSSLNAEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQI 278

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSI 321
           Y +V  ++    + + Y   HP  
Sbjct: 279 YAHVTKES----LQKNYRTFHPRA 298


>gi|260588143|ref|ZP_05854056.1| integrase/recombinase XerD [Blautia hansenii DSM 20583]
 gi|260541670|gb|EEX22239.1| integrase/recombinase XerD [Blautia hansenii DSM 20583]
          Length = 294

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 147/305 (48%), Gaps = 16/305 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E Q ++++L   RG S+ T  SYE D ++   FL     ++  I    Q+S   + ++I 
Sbjct: 4   EIQEFIEHLHNTRGTSRNTEVSYERDLKKLEQFL-----KQEGILEWHQVSAVLLNSYIM 58

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               +     S+ RS++ I++F +YL +R+   E+    ++  K     P  L   +   
Sbjct: 59  YLERKNFAASSISRSVASIRAFFQYLCQRECWRENPAEGLKAPKIEKKAPGILTVDEVDL 118

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+         E      R+ A+L LLY  G+R+SE + LT +++      L    + ++
Sbjct: 119 LL-----SQPKENTAKGVRDRAMLELLYATGIRVSELIHLTLRDVNLKLGYLTC-SQSER 172

Query: 197 IRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R++P   + + A+  Y        L  N    LF    GK ++   F + ++      G
Sbjct: 173 ERVIPFGATAKTAVEAYMAWARVELLGENSSEWLFVNCSGKSMSRQGFWKILKGYAVSAG 232

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFA HL+ NG DL+S+Q ++GH  +STTQIY N+N     + + ++Y 
Sbjct: 233 IQQDITPHTLRHSFAAHLVQNGADLKSVQEMMGHSDISTTQIYMNMN----VNKIRDVYM 288

Query: 316 QTHPS 320
           + HP 
Sbjct: 289 KAHPR 293


>gi|254515505|ref|ZP_05127565.1| tyrosine recombinase XerC [gamma proteobacterium NOR5-3]
 gi|219675227|gb|EED31593.1| tyrosine recombinase XerC [gamma proteobacterium NOR5-3]
          Length = 311

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 86/319 (26%), Positives = 152/319 (47%), Gaps = 15/319 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            S  L +    +L+ L   R LS  T+ +Y  D   F  F   +     ++     +  +
Sbjct: 7   TSASLAQRIAAFLEYLRSVRRLSSHTVTAYRRDLDSFEDFCQQH-----SVTGCSDVQES 61

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R ++++     +   SL+R LS ++++ ++         +  L ++  +K   LP  L
Sbjct: 62  HVRQWLAQGHRTGLAPNSLQRRLSALRAYFQWESSDTGQRRNPALAVQAPRKRRKLPGTL 121

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              Q    +       + +   +  R+ A+  LLY  GLR++E  ++   +I   QS + 
Sbjct: 122 EADQVGVYLR------ADDNDPLQLRDLAMAELLYSSGLRLAELRAVNIHDIDRSQSLIS 175

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG K R VP+     +AI  Y    P   +   +  LF   RG+ ++    Q  I+ 
Sbjct: 176 VTGKGSKTRTVPVGRIAIEAIDAYLPHRPTPTSAADEQALFVSGRGRRISERSIQARIQL 235

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           L +  GL      H LRHSFA+HLL + GDLR++Q +LGH  +STTQIYT+++ ++    
Sbjct: 236 LAQRNGLGRDVHPHMLRHSFASHLLESSGDLRAVQELLGHSDISTTQIYTHLDFQH---- 291

Query: 310 MMEIYDQTHPSITQKDKKN 328
           + ++YD  HP   ++  +N
Sbjct: 292 LAKVYDGAHPRARKRKDEN 310


>gi|320539384|ref|ZP_08039053.1| site-specific tyrosine recombinase [Serratia symbiotica str.
           Tucson]
 gi|320030509|gb|EFW12519.1| site-specific tyrosine recombinase [Serratia symbiotica str.
           Tucson]
          Length = 303

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 82/315 (26%), Positives = 148/315 (46%), Gaps = 17/315 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
            ++  L      +L+ L++ER LS LT  SY    +  +        + I +     L  
Sbjct: 3   PLAASLQLPVDAFLRYLKVERQLSPLTQLSYAHQLQALM-----LLAQSIGVSEWTSLDA 57

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R    + +   +   SL   LS ++SFL +L  + +   +    +R  +    LP+ 
Sbjct: 58  AAVRMLAVRSKRAGLQSASLALRLSSLRSFLDWLVSQGVLNANPAKGIRTPRSGRHLPKN 117

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++  +   L+D  L         +  R+ A+L  +YG GLR+SE + L  ++I      +
Sbjct: 118 IDVDEMNQLLDIDL------NDPLAVRDRAMLETMYGAGLRLSELVGLDCRHIDLAAGEI 171

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +PL  +    +  +  +   +L       +F   +G+ ++P   Q+   
Sbjct: 172 WVMGKGSKERKLPLGRTAVTWLQHWLAIR--ELFEPEDDAIFLSNQGRRISPRNVQKRFA 229

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     G+      H LRHSFATH+L + GDLR++Q +LGH  L+TTQIYT+++ ++   
Sbjct: 230 EWGVKQGVNSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH--- 286

Query: 309 WMMEIYDQTHPSITQ 323
            + ++YD  HP   +
Sbjct: 287 -LAKVYDAAHPRAKR 300


>gi|254294584|ref|YP_003060607.1| integrase family protein [Hirschia baltica ATCC 49814]
 gi|254043115|gb|ACT59910.1| integrase family protein [Hirschia baltica ATCC 49814]
          Length = 318

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 122/303 (40%), Positives = 188/303 (62%), Gaps = 10/303 (3%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            ++++L  ER +S+ T+  Y  D   FL FL  +   +  +  +  L+ +++RA+++ RR
Sbjct: 25  AFVEHLTHERRMSEHTIDGYRRDVGNFLGFLVNHLGGEAHVNDLVNLTPSDVRAWLAFRR 84

Query: 80  TQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +   S+ R+LS +++F KYL ++     + I  ++  K+   LPR ++++ A  L+
Sbjct: 85  ANDDLQATSISRALSAVRAFFKYLDRQLDKPNARIQMVKAPKRPQRLPRPVSQEIAKNLL 144

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
               +       WI AR++A++ L+YG GLRISEALSLT  + +  +  LRIQGKG+K+R
Sbjct: 145 KE--VENQDVEPWIAARDAAMVALMYGAGLRISEALSLTDAD-VPARDILRIQGKGNKVR 201

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VPL+P+VR A+  YY+  PF    + + PLFRG++GK LNP + Q+ I +LR  +GLP 
Sbjct: 202 LVPLIPAVRDALNVYYEKRPFL--SDEEGPLFRGVKGKKLNPRIIQKLIEKLRISMGLPD 259

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + T H LRHSFATHLL+NG DLRSIQ++LGH  LS+TQIYT V      D +  I+   H
Sbjct: 260 TATPHALRHSFATHLLANGADLRSIQTLLGHASLSSTQIYTGV----EADRLKAIHKAAH 315

Query: 319 PSI 321
           P  
Sbjct: 316 PRA 318


>gi|289705629|ref|ZP_06502018.1| tyrosine recombinase XerD [Micrococcus luteus SK58]
 gi|289557653|gb|EFD50955.1| tyrosine recombinase XerD [Micrococcus luteus SK58]
          Length = 338

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 86/326 (26%), Positives = 141/326 (43%), Gaps = 30/326 (9%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
            L    +  L++L +ERGL+  TL +Y  D  ++  +L  +      ++    +    + 
Sbjct: 27  ALAAPFRRHLEHLAVERGLAANTLAAYRRDLERYRRWLEAH-----GVRAPADVDPGHVS 81

Query: 73  AFISKRRT-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
            F+    T     + +  RS  R L+ ++   ++     +T      ++   K  + LP+
Sbjct: 82  GFLRALGTGEDGGRPLAVRSAARVLAAVRGLHRFWALEGLTPADPARDVHPPKPGDRLPK 141

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ-------- 179
           AL  +Q   L++ V + T         R+ A+L  LYG G RISE + L           
Sbjct: 142 ALPVEQVTALLEAVPVDTPA-----GLRDRALLEFLYGTGARISEVVGLDVDDVVGLAQT 196

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIRGK 236
                Q  +R+ GKG K R+VP+      A+  +       +          LF   RG 
Sbjct: 197 GDDGGQPVVRLFGKGSKERVVPIGSYAAAALDAWLVRGRPTIMTGVTRSTPALFVNARGG 256

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L+       +++     GL    + HTLRH FATHLL+ G D+R +Q +LGH  ++TTQ
Sbjct: 257 RLSRQSAWAVLKRAAERAGLEADVSPHTLRHCFATHLLAGGADVRVVQELLGHASVTTTQ 316

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSIT 322
           +YT V      D + E+Y   HP   
Sbjct: 317 VYTLVT----VDSLREVYAAAHPRAR 338


>gi|260771629|ref|ZP_05880549.1| tyrosine recombinase XerC [Vibrio metschnikovii CIP 69.14]
 gi|260613406|gb|EEX38605.1| tyrosine recombinase XerC [Vibrio metschnikovii CIP 69.14]
          Length = 309

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 83/326 (25%), Positives = 160/326 (49%), Gaps = 20/326 (6%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           E + LP  ++  LL+    + + L  E+GLS  T ++Y+   +     L       + + 
Sbjct: 4   ETSVLPSGLAQPLLR----FYEYLRSEKGLSLHTQRNYQQQLQAMAGHL-----HHLGVS 54

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
             + +    +R   SK     +   SL   LS ++SF  +L  R   + +    +   +K
Sbjct: 55  EWQHVDAAWVRQLASKGMRDGMKASSLATRLSSLRSFFDFLILRGELSANPAKGVSAPRK 114

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              LP+ L+  +   L++        +   +  R+ A++ L+YG GLR++E +++  +++
Sbjct: 115 QRPLPKNLDVDEMAQLLEVT------DNDPLSIRDRAMMELMYGAGLRLAELVAINLKDL 168

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
              +  +R+ GKGDK R VP     ++ + ++  +    L    ++ LF    G  ++  
Sbjct: 169 SFSRGEIRVIGKGDKERKVPFSGQAKEWVGKWLKVRDSLLK-GEEVALFISKLGGRISHR 227

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             Q+ + +      +    + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT++
Sbjct: 228 SVQKRMAEWGHKQSVASHISPHKLRHSFATHVLESSNNLRAVQELLGHENISTTQIYTHL 287

Query: 302 NSKNGGDWMMEIYDQTHPSITQKDKK 327
           + ++    + E+YDQ HP   +K K+
Sbjct: 288 DFQH----LAEVYDQAHPRAKKKTKE 309


>gi|113461426|ref|YP_719495.1| site-specific tyrosine recombinase XerD [Haemophilus somnus 129PT]
 gi|170718469|ref|YP_001783684.1| site-specific tyrosine recombinase XerD [Haemophilus somnus 2336]
 gi|112823469|gb|ABI25558.1| tyrosine recombinase XerD subunit [Haemophilus somnus 129PT]
 gi|168826598|gb|ACA31969.1| tyrosine recombinase XerD [Haemophilus somnus 2336]
          Length = 297

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 89/302 (29%), Positives = 152/302 (50%), Gaps = 17/302 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +E+GLS+ T+QSY  D      +L           ++  L   +++ F+ +R T
Sbjct: 10  FLNELWLEKGLSENTVQSYRLDLTALSQWLEPQG------LSLETLDVVDLQTFLGERLT 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     S  R LS ++   +YL + K  ++     + + K  + LP+ L E+Q   L+  
Sbjct: 64  QGYKATSTARMLSALRKLFQYLYREKYRSDDPSAVLSSPKLPSRLPKYLTEQQVTDLL-- 121

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
              +T +    ++ R+ A+L +LY  GLR++E +SL+  +I  +Q  +R+ GKG K RIV
Sbjct: 122 ---NTPNTEIPLELRDKAMLEMLYATGLRVTELVSLSLDSININQGVVRVIGKGKKERIV 178

Query: 201 PLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+       + ++      F L       +F   RG  +    F   ++       +  S
Sbjct: 179 PMGEEANYWLRQFILYGRSFLLAGQSSDVVFPSRRGTQMTRQTFWHRVKYYAILAEIDTS 238

Query: 260 -TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++++ H
Sbjct: 239 ALSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER----LKILHERFH 294

Query: 319 PS 320
           P 
Sbjct: 295 PR 296


>gi|261868581|ref|YP_003256503.1| site-specific tyrosine recombinase XerD [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413913|gb|ACX83284.1| tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 297

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 92/302 (30%), Positives = 147/302 (48%), Gaps = 17/302 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L I +GLS  T++SY  D      +L       +       L   +++AF+ +R  
Sbjct: 10  FLNELWIGKGLSPNTVESYRLDLTALCDWLEARHLSLLG------LDAVDLQAFLGERVE 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     S  R LS ++   +YL + K  T+     + + K  + LP+ L E+Q   L++ 
Sbjct: 64  QGYKATSTARLLSAMRKLFQYLYQEKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDLLNV 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L        I+ R+ A+L LLY  GLR++E +SL   +I  +Q  +R+ GKG K RIV
Sbjct: 124 QSLEQP-----IELRDKAMLELLYATGLRVTELVSLNTDSINLNQGVVRVIGKGKKERIV 178

Query: 201 PLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+       + ++     P  L+      LF   RG  +    F   I+       +   
Sbjct: 179 PMGEEATHWVKQFMLFARPMLLDGQSSDVLFPSRRGTQMTRQTFWHRIKHYAVLAEIDSE 238

Query: 260 -TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++++ H
Sbjct: 239 MLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER----LKRLHERYH 294

Query: 319 PS 320
           P 
Sbjct: 295 PR 296


>gi|254467807|ref|ZP_05081213.1| tyrosine recombinase XerC [beta proteobacterium KB13]
 gi|207086617|gb|EDZ63900.1| tyrosine recombinase XerC [beta proteobacterium KB13]
          Length = 295

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 94/315 (29%), Positives = 163/315 (51%), Gaps = 22/315 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S ELL +   +L  ++ E+ LS+LT+++Y+ D  + ++         I  + + + +  
Sbjct: 1   MSNELLDQ---FLNYIKFEKRLSELTIKNYQNDINRLIL---------INDKKLTEFNSE 48

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +IR  +SK     +  +SL R LS  +S   +  K ++        ++  K    LP+ L
Sbjct: 49  DIRLSLSKLHASGLSGKSLSRILSSWRSCFLFFNKSQLMKYDPTSGIKAPKSQKKLPQTL 108

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  Q   L++        +T +ID R+ AIL   Y  GLR+SE +++   +I  ++ TL+
Sbjct: 109 SIDQVFNLINIP------QTNFIDTRDRAILEFFYSSGLRLSELVNIHLSDIDTNEQTLK 162

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG+K RIVPL     +A+  +         L     LF   +GK L     Q  ++ 
Sbjct: 163 VLGKGNKFRIVPLGRKAIEALDLWILQRNKLNKLVDDEFLFLNQQGKKLTARAIQYRLKF 222

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +   +P +   H LRHSFA+H+L +  DLR++Q +LGH  +STTQIYT+++ ++    
Sbjct: 223 WAQKNNIPENIHPHLLRHSFASHVLQSSQDLRAVQELLGHSNISTTQIYTHLDFQH---- 278

Query: 310 MMEIYDQTHPSITQK 324
           + +IYDQ HP   +K
Sbjct: 279 LSKIYDQAHPRSKKK 293


>gi|165977242|ref|YP_001652835.1| site-specific tyrosine recombinase XerC [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|307257905|ref|ZP_07539660.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|165877343|gb|ABY70391.1| integrase/recombinase XerC [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|306863592|gb|EFM95520.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
          Length = 336

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 87/315 (27%), Positives = 158/315 (50%), Gaps = 17/315 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L  + + +   L IE+  S+ TL +Y+         L+     +  I T ++++   +R 
Sbjct: 38  LYLQTKPYWDYLRIEKQASQHTLSNYQRQLLAVSDMLS-----QAGISTWQEVNSATVRW 92

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            I++   Q +G +S+   L  ++ +  YL +++  + +  + ++  K S  LP+ ++ +Q
Sbjct: 93  IIAQSNKQGLGAKSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQ 152

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           A  L+      TS   +  D R+ A++ L+Y  GLR+SE   L   ++      +R+ GK
Sbjct: 153 AKQLL------TSDSHEPSDLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGK 206

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K RIVP+     +A+  +  +            +F   RG  L+    Q  +++    
Sbjct: 207 GNKERIVPIGSKALEALNRWLAVRNQ--FKPQDNAVFLNKRGGRLSHRSIQLVMQKWGEK 264

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL      H LRHSFATH+L   GDLR++Q +LGH  L+TTQIYT+++ ++    + +I
Sbjct: 265 QGLESHLHPHKLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQH----LAKI 320

Query: 314 YDQTHPSITQKDKKN 328
           YD  HP   +K + +
Sbjct: 321 YDAAHPRAKRKKQDD 335


>gi|126209269|ref|YP_001054494.1| site-specific tyrosine recombinase XerC [Actinobacillus
           pleuropneumoniae L20]
 gi|307248877|ref|ZP_07530889.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|307253490|ref|ZP_07535361.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|126098061|gb|ABN74889.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
 gi|306854614|gb|EFM86805.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|306859169|gb|EFM91211.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
          Length = 336

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 86/315 (27%), Positives = 157/315 (49%), Gaps = 17/315 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L  + + +   L IE+  S+ TL +Y+         L+     +  I T ++++   +R 
Sbjct: 38  LYLQTKPYWDYLRIEKQASQHTLSNYQRQLLAVSDMLS-----QAGISTWQEVNSATVRW 92

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            I++   Q +G +S+   L  ++ +  YL +++  + +  + ++  K S  LP+ ++ +Q
Sbjct: 93  IIAQSNKQGLGAKSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQ 152

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+      TS   +  D R+ A++ L+Y  GLR+SE   L   ++      +R+ GK
Sbjct: 153 IGQLL------TSDSHEPSDLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGK 206

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K RIVP+     +A+  +  +            +F   RG  L+    Q  +++    
Sbjct: 207 GNKERIVPIGSKALEALNRWLAVRNQ--FKPQDNAVFLNKRGGRLSHRSIQLVMQKWGEK 264

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL      H LRHSFATH+L   GDLR++Q +LGH  L+TTQIYT+++ ++    + +I
Sbjct: 265 QGLESHLHPHKLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQH----LAKI 320

Query: 314 YDQTHPSITQKDKKN 328
           YD  HP   +K + +
Sbjct: 321 YDAAHPRAKRKKQDD 335


>gi|218258194|ref|ZP_03474596.1| hypothetical protein PRABACTJOHN_00250 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225689|gb|EEC98339.1| hypothetical protein PRABACTJOHN_00250 [Parabacteroides johnsonii
           DSM 18315]
          Length = 301

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 87/309 (28%), Positives = 152/309 (49%), Gaps = 16/309 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   L +E+ LS  ++ +Y  D  +   F+    ++         ++Y +++ F+++
Sbjct: 8   VERYKTYLRLEKALSANSIDAYLTDLDKLTNFVESEGKK------YADVTYDDLQQFVAR 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I  RS  R +SGIKSF ++L      T      + + K    LP  L   +  ++
Sbjct: 62  LHDIGIHPRSQARIISGIKSFYRFLFLDNYITTDPTELLESPKIGLKLPEVLTVNEINSI 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D + L           RN A+L +LY CGLR+SE +SL   ++  D+  ++++GKG K 
Sbjct: 122 LDTIDLTLPE-----GQRNRAMLEVLYSCGLRVSELVSLRFTDVYFDEGFIKVEGKGSKQ 176

Query: 198 RIVPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +  K I  Y        +    +  LF   RG  L+  +    I+Q     G+
Sbjct: 177 RLVPISETAIKEIKNYLYDRNHVPVKKGFEDILFLSRRGTALSRIMVFHIIKQQTEMAGI 236

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HT RHSFATHLL  G +L +IQ +LGH +++TT+IYT+++ +     ++E    
Sbjct: 237 KKNVSPHTFRHSFATHLLEGGANLLAIQEMLGHEKITTTEIYTHIDRQFLRKEILE---- 292

Query: 317 THPSITQKD 325
            HP    +D
Sbjct: 293 HHPRSKPRD 301


>gi|283782965|ref|YP_003373719.1| tyrosine recombinase XerD [Gardnerella vaginalis 409-05]
 gi|283441042|gb|ADB13508.1| tyrosine recombinase XerD [Gardnerella vaginalis 409-05]
          Length = 319

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 94/324 (29%), Positives = 165/324 (50%), Gaps = 17/324 (5%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
             NN+PE    E     Q ++ +++IERGLSK T+ +Y  D + +  +L  Y E KI  +
Sbjct: 10  RKNNIPE----EFALHIQRFIAHIDIERGLSKKTVSAYASDLQDYTCWL--YNERKI--K 61

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            I  +S  +I ++I       +G R++ R L+ I  + +++             ++  K+
Sbjct: 62  DITTISQLDIESYIRTLNELGLGTRTVARRLASIHEWHRFMLAHGDIQADVSAQVKAPKQ 121

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           ++ LP  L+ ++   +++         +  I  R++A+L  LY  G RISEA+ +  ++I
Sbjct: 122 ADYLPDVLSIEEVNRVIEA--AGNFGSSDAISIRDTALLEFLYATGARISEAVGVKFEDI 179

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL---FRGIRGKPL 238
             ++S +++ GKG K R+VP+     +A+  Y +    +L L  +  L   F   RG  L
Sbjct: 180 DLNESVVKLTGKGSKQRLVPIGGCAVRALRNYMEKSRPELALKGKRELHTIFLNKRGSAL 239

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +       + Q      L      HTLRHS ATHL++ G D+R++Q +LGH  ++TTQIY
Sbjct: 240 SRQSAWEIVTQAGERAKLDKPLHPHTLRHSLATHLIAGGADVRTVQELLGHASVTTTQIY 299

Query: 299 TNVNSKNGGDWMMEIYDQTHPSIT 322
           T+++     D ++E Y  +HP   
Sbjct: 300 THISP----DALVEAYVMSHPRAK 319


>gi|313813390|gb|EFS51104.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL025PA1]
 gi|327334220|gb|EGE75934.1| putative tyrosine recombinase XerC [Propionibacterium acnes
           HL097PA1]
          Length = 315

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 82/312 (26%), Positives = 146/312 (46%), Gaps = 10/312 (3%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +   L    +++  +L   R  S  T++ Y  D    +     + ++ +      ++  +
Sbjct: 14  LPMSLTVPVEDFCGHLSALRR-SPNTIRGYRADLIDLMGHAHSHGDDALG-----RIGTS 67

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++RA+++  R       +++R  S  + F ++     + +      + + K    LP  L
Sbjct: 68  QVRAWLADTRVAGASAATMQRRWSAARVFFRWAANEGLISADPTTALNSAKVPKRLPATL 127

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              QA  ++D  +    H+     AR++AIL +LYG GLR+ E   L   ++   + T++
Sbjct: 128 GVDQARHILDEAVAQARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVK 187

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKGDK R VP+     +AI  +       +  +    LF G RG+ ++  V +R +  
Sbjct: 188 VTGKGDKERTVPMGAPALRAIDTWLPRREEWVGPHSGQALFLGARGRRIDQRVVRRVVHT 247

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             R          H LRH+ ATHLL  G DLR++Q ILGH  L+TTQIYT+V+++     
Sbjct: 248 HLRAEPDSPDLGPHGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTER---- 303

Query: 310 MMEIYDQTHPSI 321
           +   + Q HP  
Sbjct: 304 LRTAFRQAHPRA 315


>gi|53715763|ref|YP_101755.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60683694|ref|YP_213838.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343]
 gi|265767295|ref|ZP_06094961.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_16]
 gi|52218628|dbj|BAD51221.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60495128|emb|CAH09949.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343]
 gi|263252600|gb|EEZ24112.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_16]
          Length = 317

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 98/313 (31%), Positives = 157/313 (50%), Gaps = 18/313 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + Q L++E+ LSK TL++Y  D  + L FL+    E      I ++S T+++ F + 
Sbjct: 17  IKKYQQYLKLEKSLSKNTLEAYLTDLEKLLSFLSAEGVE------ILEVSLTDLQRFAAG 70

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I  RS  R +SGIKSF  +L             +   K    LP  L  ++   +
Sbjct: 71  LHDIGIHARSQARIISGIKSFFHFLIIADYIEADPSELLEGPKIGFKLPEVLTVEEIDRI 130

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +      T   +K    RN AIL  LY CGLR+SE   L   ++  D+  ++++GKG K 
Sbjct: 131 I-----STIDLSKNEGQRNRAILETLYSCGLRVSELTGLKLSDLYFDEGFIKVEGKGSKQ 185

Query: 198 RIVPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+ P   + I  Y+      ++  + +  LF   RG  L+  +    I++L    G+
Sbjct: 186 RLVPISPKAIQEIKLYFLDRNRINIKKDHEDYLFLSRRGTHLSRIMIFHLIKELADMAGI 245

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HT RHSFATHLL  G +LR+IQ +LGH  +STT+IYT+++       ++E    
Sbjct: 246 TKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESISTTEIYTHIDRNMLRSEIIE---- 301

Query: 317 THPSITQ--KDKK 327
            HP   +  ++KK
Sbjct: 302 HHPRNIKYRQEKK 314


>gi|157692293|ref|YP_001486755.1| site-specific tyrosine recombinase XerC [Bacillus pumilus SAFR-032]
 gi|172046054|sp|A8FD78|XERC_BACP2 RecName: Full=Tyrosine recombinase xerC
 gi|157681051|gb|ABV62195.1| tyrosine recombinase [Bacillus pumilus SAFR-032]
          Length = 305

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 89/308 (28%), Positives = 152/308 (49%), Gaps = 18/308 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +++ L+IE+  S LT+  Y     +F+ F+         I    ++SY + R ++++   
Sbjct: 11  FIEYLQIEKNYSALTISGYTEAIEEFVRFMNVQ-----GIDGFEEVSYQDTRIYLTEAYE 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  R++ + +S ++SF K+L + ++  E+  L +   K+   +P  L E++   L   
Sbjct: 66  KGLTRRTISKKVSALRSFYKFLLREQLVKENPFLLVSLPKQDKRIPSFLYEEELKELF-- 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                S  +  +  RN AIL LLY  G+R+SE  SL   ++     T+ + GKG K R V
Sbjct: 124 ---TVSDVSTPLGQRNQAILELLYATGMRVSELCSLKESDLDLSMDTVLVHGKGSKQRYV 180

Query: 201 PLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           P      +A++ Y +     L           +F   RG PL     +  + +L +    
Sbjct: 181 PFGSYAHEALITYLEDGRLKLKAKGKDRADAYVFLNQRGAPLTDRGVRFILTELMKKASG 240

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            L    H LRH+FATHLL+ G DLRS+Q +LGH  LS+TQ+YT+V+     D + + Y  
Sbjct: 241 TLHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVS----KDSLRKTYMS 296

Query: 317 THPSITQK 324
            HP   ++
Sbjct: 297 HHPRAFKR 304


>gi|289624627|ref|ZP_06457581.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289651147|ref|ZP_06482490.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298489345|ref|ZP_07007359.1| Tyrosine recombinase xerC [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298156136|gb|EFH97242.1| Tyrosine recombinase xerC [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 299

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 90/311 (28%), Positives = 149/311 (47%), Gaps = 17/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +    +  +L  ER +S  TL++Y  D  + L +      +K  + +   L    +R+
Sbjct: 1   MEQHLDAYCMHLRSERQVSPHTLEAYRRDLGKVLAYC-----QKAQLSSWNDLDIQHLRS 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F +++  Q    RSL R LS ++ F KYL +  I        +   K    LP+ L+  +
Sbjct: 56  FTARQHQQGQSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDR 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D  +     E  ++  R+ AIL LLY  GLR+SE   L    +      +++ GK
Sbjct: 116 TAQLLDGGV-----EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R++P+    R+A+  +  L    L       +F   +GK L P   Q  ++     
Sbjct: 171 GSKTRVLPVGSKARQALEIWLPLR--ALTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGER 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L  +   H LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +
Sbjct: 229 -ELGQNLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATV 283

Query: 314 YDQTHPSITQK 324
           YD  HP   +K
Sbjct: 284 YDSAHPRAKRK 294


>gi|331082291|ref|ZP_08331417.1| hypothetical protein HMPREF0992_00341 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400777|gb|EGG80378.1| hypothetical protein HMPREF0992_00341 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 294

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 147/305 (48%), Gaps = 16/305 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E Q ++++L   RG S+ T  SYE D ++   FL     ++  I    Q+S   + ++I 
Sbjct: 4   EIQEFIEHLHNTRGTSRNTEVSYERDLKKLEQFL-----KQEGILEWHQVSAVLLNSYIM 58

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               +     S+ RS++ I++F +YL +R+   E+    ++  K     P  L   +   
Sbjct: 59  YLERKNFAASSISRSVASIRAFFQYLCQRECWRENPAEGLKAPKIEKKAPGILTVDEVDL 118

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+         E      R+ A+L LLY  G+R+SE + LT +++      L    + ++
Sbjct: 119 LL-----SQPKENTAKGVRDRAMLELLYATGIRVSELIHLTLRDVNLKLGYLTC-SQSER 172

Query: 197 IRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R++P   + + A+  Y        L  N    LF    GK ++   F + ++      G
Sbjct: 173 ERVIPFGATAKTAVEAYMAWARAELLGENSSEWLFVNCSGKSMSRQGFWKILKGYAVSAG 232

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFA HL+ NG DL+S+Q ++GH  +STTQIY N+N     + + ++Y 
Sbjct: 233 IQQDITPHTLRHSFAAHLVQNGADLKSVQEMMGHSDISTTQIYMNMN----VNKIRDVYM 288

Query: 316 QTHPS 320
           + HP 
Sbjct: 289 KAHPR 293


>gi|320104524|ref|YP_004180115.1| integrase family protein [Isosphaera pallida ATCC 43644]
 gi|319751806|gb|ADV63566.1| integrase family protein [Isosphaera pallida ATCC 43644]
          Length = 442

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 95/306 (31%), Positives = 149/306 (48%), Gaps = 15/306 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ----TIRQLSYTEIRAFI 75
            ++ +LE  R +S+ TL++Y+ D   F  +LA       +        R      +R + 
Sbjct: 148 EFVTSLERNREVSEHTLRAYQEDLGLFSRYLAESQPGCASSDREPIDPRLADARRLRGYS 207

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           S    Q     ++ R L+ +++F ++L+K           MRN K +  LPR L   Q  
Sbjct: 208 SWLSRQGYAPGTIARRLASLRTFYRHLRKHGHLEGDPTAAMRNPKPARRLPRPLRLDQIE 267

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L++ V    S     +  R+ AIL LLYG GLR+ E ++L  +++  +++ +R++GKG 
Sbjct: 268 RLLEAVPTDQS-----LGVRDRAILELLYGGGLRVGELVALDLEDLDLERNVVRVRGKGR 322

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           + R+ P+     + +  +      D     +  LF    G+ L      R      R LG
Sbjct: 323 RERLTPIGKQAAEWVRRWLTHRRPD--HGGEHALFLNRYGRRLTARSVDRLFETHARGLG 380

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L    T H+LRHSFATHLL  G DLRS+Q +LGH RL+TTQIYT V  +     ++E Y 
Sbjct: 381 LDADATPHSLRHSFATHLLDRGADLRSVQELLGHRRLTTTQIYTQVTRER----LLETYR 436

Query: 316 QTHPSI 321
           + HP  
Sbjct: 437 KAHPRA 442


>gi|320326565|gb|EFW82616.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320331369|gb|EFW87310.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330881323|gb|EGH15472.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 299

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 90/311 (28%), Positives = 149/311 (47%), Gaps = 17/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +    +  +L  ER +S  TL++Y  D  + L +      +K  + +   L    +R+
Sbjct: 1   MEQHLDAYCMHLRSERQVSPHTLEAYRRDLSKVLAYC-----QKAQLSSWNDLDIQHLRS 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F +++  Q    RSL R LS ++ F KYL +  I        +   K    LP+ L+  +
Sbjct: 56  FTARQHQQGQSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDR 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D  +     E  ++  R+ AIL LLY  GLR+SE   L    +      +++ GK
Sbjct: 116 TAQLLDGGV-----EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R++P+    R+A+  +  L    L       +F   +GK L P   Q  ++     
Sbjct: 171 GSKTRVLPVGSKARQALEIWLPLR--ALTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGER 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L  +   H LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +
Sbjct: 229 -ELGQNLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATV 283

Query: 314 YDQTHPSITQK 324
           YD  HP   +K
Sbjct: 284 YDSAHPRAKRK 294


>gi|15600473|ref|NP_253967.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa
           PAO1]
 gi|254238023|ref|ZP_04931346.1| site-specific recombinase Sss [Pseudomonas aeruginosa C3719]
 gi|34222782|sp|Q51566|XERC_PSEAE RecName: Full=Tyrosine recombinase xerC
 gi|9951593|gb|AAG08665.1|AE004940_9 site-specific recombinase Sss [Pseudomonas aeruginosa PAO1]
 gi|126169954|gb|EAZ55465.1| site-specific recombinase Sss [Pseudomonas aeruginosa C3719]
          Length = 303

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 95/311 (30%), Positives = 152/311 (48%), Gaps = 17/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  +   +L++L  ER +S  TL  Y  D  + L        EK  +     L    +R 
Sbjct: 1   MRADLDAFLEHLRSERQVSAHTLDGYRRDLLKILA-----LAEKAGLSDWNALDTRSLRT 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+++   Q    RSL R LS  +   +YL +           +   K    LPR L+  +
Sbjct: 56  FVARLHQQGQSSRSLARLLSATRGLYQYLLREGRCRHDPANGLSAPKSPRKLPRTLDADR 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           AL L+D      + E  +I  R+ A+L L Y  GLR+SE + L  + +   +  +R++GK
Sbjct: 116 ALQLLDG-----AVEDDFIARRDQALLELFYSSGLRLSELVGLDLEWLDLKEGLVRVRGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K+R +P+  + R+A+  +  L            +F G  GK L P   Q  +RQ    
Sbjct: 171 GNKVRELPVGKAARQALEAWLPLRTQ--AAPEDGAVFIGRSGKRLTPRAIQLRVRQAGVR 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRHSFA+HLL + GDLR++Q +LGH  ++TTQIYT+++ ++    +  +
Sbjct: 229 -ELGQHLHPHMLRHSFASHLLESSGDLRAVQELLGHADIATTQIYTHLDFQH----LASV 283

Query: 314 YDQTHPSITQK 324
           YD+ HP   +K
Sbjct: 284 YDRAHPRAKRK 294


>gi|269978219|ref|ZP_06185169.1| tyrosine recombinase XerD [Mobiluncus mulieris 28-1]
 gi|269933728|gb|EEZ90312.1| tyrosine recombinase XerD [Mobiluncus mulieris 28-1]
          Length = 319

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 87/313 (27%), Positives = 146/313 (46%), Gaps = 22/313 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q++L  L +ERG S  T+ +Y+ D ++++ +L     +     T+ Q++  ++  F+   
Sbjct: 18  QDFLNYLSVERGASPHTIAAYQRDLQRYVAYLQILGRD-----TLAQVTEVDLEGFVRAL 72

Query: 79  RTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
                    +G  S++R L+  +S+ +YL        +   +++  K    LP  LN ++
Sbjct: 73  GDGFASFPPLGSTSVRRCLAAARSWHRYLFDSGSLGANVASSVKPAKLPRRLPETLNLEE 132

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ--STLRIQ 191
              L    L   S        R+ A+L  LY  G RISEA++L   +I  +   + +R+ 
Sbjct: 133 MEAL----LAAASSPGDSNSLRDRALLEFLYASGARISEAMNLVLDDIDFETEPALVRLF 188

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQ 249
           GKG K RI  L     +A+  Y       L    Q    +F    GKP++       I+ 
Sbjct: 189 GKGRKERISMLGRQACQALQAYLVRVRPTLAEKGQSIGRVFLNTYGKPMSRQTAWAIIQA 248

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +   +      HTLRH FATHLL  G D+R +Q +LGH  ++TT+IYT V+ +     
Sbjct: 249 AAKRAQIDRPVHPHTLRHCFATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQ----M 304

Query: 310 MMEIYDQTHPSIT 322
           ++E+Y   HP   
Sbjct: 305 LLEVYASAHPRAR 317


>gi|222055852|ref|YP_002538214.1| tyrosine recombinase XerD [Geobacter sp. FRC-32]
 gi|221565141|gb|ACM21113.1| tyrosine recombinase XerD [Geobacter sp. FRC-32]
          Length = 295

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 92/301 (30%), Positives = 152/301 (50%), Gaps = 15/301 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L++E+GL+K TL++Y  D   +L FLA           +  ++  ++   ++  + 
Sbjct: 8   FLNYLQVEKGLTKNTLEAYSRDLSVYLDFLAGQGR-----LDLDHITAMDVIEHLAGLKE 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  RS  R+LS +K F ++L        +  + +   +  N LP  L+ ++   L+D 
Sbjct: 63  RGLSPRSRARALSAVKMFHRFLMVENHCPNNPAVIIEAPRSLNRLPDVLSGREVELLLD- 121

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
               ++      D R+ A+L +LY  GLR+SE ++L  +++  D   L   GKG+K R+V
Sbjct: 122 ----SARSADLNDVRDLAMLEVLYATGLRVSELVALKLRDVNLDAGYLLTMGKGEKERLV 177

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           PL  + R A  EY        +       LF    G  +    F   I++     G+  S
Sbjct: 178 PLGETARLATAEYLRSARVKADRKGDCEILFISRLGDGMTRQAFWNIIKKRAAAAGIRKS 237

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + H+LRHSFATHLL NG DLRS+Q +LGH  LS+TQIYT+V  +     + +++   HP
Sbjct: 238 ISPHSLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRER----LKQLHQDIHP 293

Query: 320 S 320
            
Sbjct: 294 R 294


>gi|307264510|ref|ZP_07546095.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
 gi|306870207|gb|EFN01966.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
          Length = 336

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 86/315 (27%), Positives = 157/315 (49%), Gaps = 17/315 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L  + + +   L IE+  S+ TL +Y+         L+     +  I T ++++   +R 
Sbjct: 38  LYLQTKPYWDYLRIEKQASQHTLSNYQRQLLAVSDMLS-----QAGISTWQEVNSATVRW 92

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            I++   Q +G +S+   L  ++ +  YL +++  + +  + ++  K S  LP+ ++ +Q
Sbjct: 93  IIAQSNKQGLGAKSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQ 152

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+      TS   +  D R+ A++ L+Y  GLR+SE   L   ++      +R+ GK
Sbjct: 153 IGQLL------TSDSHEPSDLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGK 206

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K RIVP+     +A+  +  +            +F   RG  L+    Q  +++    
Sbjct: 207 GNKERIVPIGSKALEALNRWLAVRNQ--FKPQDNAVFLNKRGGRLSHRSIQLVMQKWGEK 264

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL      H LRHSFATH+L   GDLR++Q +LGH  L+TTQIYT+++ ++    + +I
Sbjct: 265 QGLESHLHPHKLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQH----LAKI 320

Query: 314 YDQTHPSITQKDKKN 328
           YD  HP   +K + +
Sbjct: 321 YDAAHPRAKRKKQDD 335


>gi|307262299|ref|ZP_07543948.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|306868062|gb|EFM99889.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
          Length = 336

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 86/315 (27%), Positives = 157/315 (49%), Gaps = 17/315 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L  + + +   L IE+  S+ TL +Y+         L+     +  I T ++++   +R 
Sbjct: 38  LYLQTKPYWDYLRIEKQASQHTLSNYQRQLLAVSDMLS-----QAGISTWQEVNSATVRW 92

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            I++   Q +G +S+   L  ++ +  YL +++  + +  + ++  K S  LP+ ++ +Q
Sbjct: 93  IIAQSNKQGLGAKSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQ 152

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+      TS   +  D R+ A++ L+Y  GLR+SE   L   ++      +R+ GK
Sbjct: 153 IGQLL------TSDSHEPSDLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGK 206

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K RIVP+     +A+  +  +            +F   RG  L+    Q  +++    
Sbjct: 207 GNKERIVPIGSKALEALNRWLAVRNQ--FKPQDNAVFLNKRGGRLSHRSIQLVMQKWGEK 264

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL      H LRHSFATH+L   GDLR++Q +LGH  L+TTQIYT+++ ++    + +I
Sbjct: 265 QGLESHLHPHKLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQH----LAKI 320

Query: 314 YDQTHPSITQKDKKN 328
           YD  HP   +K + +
Sbjct: 321 YDAAHPRAKRKKQDD 335


>gi|107104381|ref|ZP_01368299.1| hypothetical protein PaerPA_01005457 [Pseudomonas aeruginosa PACS2]
 gi|116053429|ref|YP_793754.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218894383|ref|YP_002443253.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa
           LESB58]
 gi|254243833|ref|ZP_04937155.1| site-specific recombinase Sss [Pseudomonas aeruginosa 2192]
 gi|296392138|ref|ZP_06881613.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa
           PAb1]
 gi|313106696|ref|ZP_07792914.1| site-specific recombinase [Pseudomonas aeruginosa 39016]
 gi|122256552|sp|Q02E82|XERC_PSEAB RecName: Full=Tyrosine recombinase xerC
 gi|254799351|sp|B7V5H1|XERC_PSEA8 RecName: Full=Tyrosine recombinase xerC
 gi|115588650|gb|ABJ14665.1| site-specific recombinase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126197211|gb|EAZ61274.1| site-specific recombinase Sss [Pseudomonas aeruginosa 2192]
 gi|218774612|emb|CAW30429.1| site-specific recombinase Sss [Pseudomonas aeruginosa LESB58]
 gi|310879416|gb|EFQ38010.1| site-specific recombinase [Pseudomonas aeruginosa 39016]
          Length = 303

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 95/311 (30%), Positives = 152/311 (48%), Gaps = 17/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  +   +L++L  ER +S  TL  Y  D  + L        EK  +     L    +R 
Sbjct: 1   MRADLDAFLEHLRSERQVSAHTLDGYRRDLLKILALA-----EKAGLSDWNALDTRSLRT 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+++   Q    RSL R LS  +   +YL +           +   K    LPR L+  +
Sbjct: 56  FVARLHQQGQSSRSLARLLSATRGLYQYLLREGRCRHDPANGLSAPKSPRKLPRTLDADR 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           AL L+D      + E  +I  R+ A+L L Y  GLR+SE + L  + +   +  +R++GK
Sbjct: 116 ALQLLDG-----AVEDDFIARRDQALLELFYSSGLRLSELVGLDLEWLDLKEGLVRVRGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K+R +P+  + R+A+  +  L            +F G  GK L P   Q  +RQ    
Sbjct: 171 GNKVRELPVGKAARQALEAWLPLR--AQAAPEDGAVFIGRGGKRLTPRAIQLRVRQAGVR 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRHSFA+HLL + GDLR++Q +LGH  ++TTQIYT+++ ++    +  +
Sbjct: 229 -ELGQHLHPHMLRHSFASHLLESSGDLRAVQELLGHADIATTQIYTHLDFQH----LASV 283

Query: 314 YDQTHPSITQK 324
           YD+ HP   +K
Sbjct: 284 YDRAHPRAKRK 294


>gi|302189430|ref|ZP_07266103.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           syringae 642]
          Length = 299

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 90/311 (28%), Positives = 149/311 (47%), Gaps = 17/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +    +  +L  ER +S  TL++Y  D  + L +      +K  + +   L    +R+
Sbjct: 1   MEQHLDAYCVHLRSERQVSPHTLEAYRRDLGKVLAYC-----QKAQLSSWSDLDIQHLRS 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F +++  Q    RSL R LS ++ F KYL +  I        +   K    LP+ L+  +
Sbjct: 56  FTARQHQQGQSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDR 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D  +     E  ++  R+ AIL LLY  GLR+SE   L    +      +++ GK
Sbjct: 116 TAQLLDGGV-----EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R++P+    R+A+  +  L    L       +F   +GK L P   Q  ++     
Sbjct: 171 GSKTRVLPVGSKARQALEVWLPLR--ALTNPRDDAVFVSQQGKRLGPRAIQVRLKAAGER 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L  +   H LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +
Sbjct: 229 -ELGQNLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATV 283

Query: 314 YDQTHPSITQK 324
           YD  HP   +K
Sbjct: 284 YDSAHPRAKRK 294


>gi|227549015|ref|ZP_03979064.1| site-specific tyrosine recombinase XerC [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078925|gb|EEI16888.1| site-specific tyrosine recombinase XerC [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 298

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 82/316 (25%), Positives = 154/316 (48%), Gaps = 18/316 (5%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +  + S +L +  +++ ++ E+  G S  T+++Y  D    L F            T  +
Sbjct: 1   MSTVRSSQLGEAIEDFAEHAELVLGRSPATVKAYRSDLATLLPF----------ATTFAE 50

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           L+   +RA+++   ++ +   +L R  S +++F  +   +          + + K +  L
Sbjct: 51  LTLPTLRAWLADAVSRGLARSTLARRTSAVRAFSTWACNQGYLQSDPAARLLSPKVNRHL 110

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P  +  + A  LV+  +    H  + +  R+ A+L LLY  G+R++E  +L   ++   +
Sbjct: 111 PTVVEAEAAGELVEAEINDDDHPAETL--RDRAMLELLYATGMRVAELSALDIGDVDLGR 168

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             +++ GKGDK RIVP   +   A+  +      +L  +    LF G RGK ++    +R
Sbjct: 169 GAVKVTGKGDKQRIVPFGGAASDAVQRWVSAGRGELAGDT-DALFVGSRGKRIDQRQVRR 227

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            + +     G     + H+LRHS ATH++  G DLR +Q +LGH  L TTQIYT+V+++ 
Sbjct: 228 IVERAAVRTG-AGEISPHSLRHSAATHMIEGGADLRVVQEMLGHSSLQTTQIYTHVSAQR 286

Query: 306 GGDWMMEIYDQTHPSI 321
               +  +YD+ HP  
Sbjct: 287 ----LKNVYDRAHPRA 298


>gi|145637619|ref|ZP_01793275.1| tyrosine recombinase [Haemophilus influenzae PittHH]
 gi|145269216|gb|EDK09163.1| tyrosine recombinase [Haemophilus influenzae PittHH]
          Length = 325

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 94/313 (30%), Positives = 154/313 (49%), Gaps = 17/313 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +L     +   L IER +S  TL +Y+      +  LA     +  I +  Q++ + +R 
Sbjct: 1   MLTALNRYWDYLRIERQMSPHTLTNYQHQLDATIKILA-----QQDIHSWTQVTPSVVRF 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            +++ + Q + ++SL   LS ++ FL +L ++     +    +   K+   LP+ ++ +Q
Sbjct: 56  ILAESKKQGLKEKSLALRLSALRRFLSFLVQQGELKVNPTTGISAPKQGKHLPKNMDGEQ 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+       +   + ID R+ AIL L+Y  GLR+SE   L   +I      +R+ GK
Sbjct: 116 VQQLL------ANDSKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R+VP       AI E+  +    L       LF    G  ++    Q+ +      
Sbjct: 170 GNKERVVPFGRYASHAIQEWLKVR--ALFNPKDEALFVSQLGNRISHRAIQKRLETWGIR 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL      H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    + E+
Sbjct: 228 QGLNSHLNPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEV 283

Query: 314 YDQTHPSITQKDK 326
           YDQ HP   +K+K
Sbjct: 284 YDQAHPRAKRKNK 296


>gi|237748814|ref|ZP_04579294.1| site specific integrase/recombinase [Oxalobacter formigenes OXCC13]
 gi|229380176|gb|EEO30267.1| site specific integrase/recombinase [Oxalobacter formigenes OXCC13]
          Length = 317

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 96/325 (29%), Positives = 163/325 (50%), Gaps = 28/325 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L  +R LS  T+ +Y  D  + +        E      +  LS ++IR F SK  
Sbjct: 4   RYLDTLTGQRQLSDQTVINYRRDLEELI--------ELANQTKLATLSSSDIRRFTSKLH 55

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +  RS+ R LS  + F ++L +  +T+ + + ++   KK+  LP+AL+   A+ +V 
Sbjct: 56  AKGLNPRSISRKLSAWRGFYRWLIEENLTSANPVEDIHAPKKNKPLPKALSVDDAVRVVA 115

Query: 140 NV-LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP-----------QNIMDDQST 187
           +        + +     N A+  LLY  GLR+SE  SL               I  ++  
Sbjct: 116 STSEKEAVEQDRATLLCNHAMFELLYSSGLRVSELTSLDIHAIKDTGYRSASWINLEEKE 175

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL----PLFRGIRGKPLNPGVF 243
           + + GKG+K RIVP+  +   AI  +       ++ ++Q      LF   RG+ ++P   
Sbjct: 176 VTVTGKGNKTRIVPIGDAAVHAIRNWLLTRETLIDPSLQQEHTNALFINSRGRRISPRTV 235

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           Q  ++     LGLP+S   H LRHSFA+H+L + GDLR++Q +LGH  +++TQIYT ++ 
Sbjct: 236 QLRLKSHANALGLPVSVHPHVLRHSFASHILQSSGDLRAVQEMLGHSSIASTQIYTALDF 295

Query: 304 KNGGDWMMEIYDQTHPSITQKDKKN 328
           +     + ++YD  HP    K++KN
Sbjct: 296 QR----LAQVYDAAHPRAKTKNEKN 316


>gi|160891605|ref|ZP_02072608.1| hypothetical protein BACUNI_04058 [Bacteroides uniformis ATCC 8492]
 gi|317478317|ref|ZP_07937481.1| tyrosine recombinase XerD [Bacteroides sp. 4_1_36]
 gi|156859012|gb|EDO52443.1| hypothetical protein BACUNI_04058 [Bacteroides uniformis ATCC 8492]
 gi|316905476|gb|EFV27266.1| tyrosine recombinase XerD [Bacteroides sp. 4_1_36]
          Length = 317

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 91/312 (29%), Positives = 153/312 (49%), Gaps = 17/312 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + Q L++E+ LS  T+ +Y+ D ++ L FL            I   +  +++ F S 
Sbjct: 17  IRKYHQYLKLEKALSPNTVDAYQTDLQKLLHFLEGEGI------AILDTTLDDLQHFASG 70

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I  RS  R LSGIKSF  +L             +   K    LP  L  ++   +
Sbjct: 71  LHDIGIHPRSQARILSGIKSFFHFLVMADYLEGDPSELLEGPKIGFKLPEVLTVEEIDRI 130

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +  + L T+        RN AIL  LY CGLR+SE  +L   ++  D+  ++++GKG K 
Sbjct: 131 ISAIDLGTNE-----GQRNRAILETLYSCGLRVSELCNLKISDLYFDEGFIKVEGKGSKQ 185

Query: 198 RIVPLLPSVRKAILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R+VP+     K I  ++      + +  + +  +F    GK ++  +    I++L +  G
Sbjct: 186 RLVPISSRAIKEIRNWFVDRNGGWKIKKDFEDYVFLARWGKNISRIMVFHLIKELAKKAG 245

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + + HT RHSFATHLL  G +LR+IQS+LGH  ++TT+IYT+++       ++E   
Sbjct: 246 ITKNISPHTFRHSFATHLLEGGANLRAIQSMLGHESIATTEIYTHIDRHRLRSEIIE--- 302

Query: 316 QTHPSITQKDKK 327
             HP   +  K+
Sbjct: 303 -HHPRNIKYRKE 313


>gi|163788788|ref|ZP_02183233.1| 3-dehydroquinate dehydratase [Flavobacteriales bacterium ALC-1]
 gi|159876025|gb|EDP70084.1| 3-dehydroquinate dehydratase [Flavobacteriales bacterium ALC-1]
          Length = 302

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 92/306 (30%), Positives = 160/306 (52%), Gaps = 10/306 (3%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +   ++   L+IERGLSK ++++Y  D ++ +++L    EE   I +        ++ FI
Sbjct: 5   QAITDYRHYLQIERGLSKNSIENYCYDIKKLIVYL----EENALIVSPITTDNAIVKQFI 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
               ++ +  RS  R +SG+++F  YL        + +  + + +    LP  L+     
Sbjct: 61  -YTISKSLNARSQARLISGLRNFFDYLIFENYRETNPLDLIESPRIGRKLPDTLSIDDID 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            LV+N+ L   +    +  RN AI+  LY CGLR+SE + L   ++  D+  +++ GKGD
Sbjct: 120 NLVNNIDLSYQYNGVNLGERNRAIIETLYSCGLRVSELIELKISDLFFDEGFIKVTGKGD 179

Query: 196 KIRIVPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K R VP+  + +  I  +  +    ++  N +  LF   +GK L   +    I++L    
Sbjct: 180 KQRFVPIGLTTQNYIAIWIGIRNHIEVQPNSKDNLFLNYKGKKLTRAMIFTIIKKLVEKS 239

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+  + + HT RHSFATHLL NG DLR+IQ +LGH  ++TT+IY +V+  +  D +    
Sbjct: 240 GITKNVSPHTFRHSFATHLLENGADLRAIQMMLGHESITTTEIYMHVDRSHLSDVL---- 295

Query: 315 DQTHPS 320
           ++ HP 
Sbjct: 296 NKFHPR 301


>gi|88861277|ref|ZP_01135909.1| site-specific recombinase [Pseudoalteromonas tunicata D2]
 gi|88816758|gb|EAR26581.1| site-specific recombinase [Pseudoalteromonas tunicata D2]
          Length = 305

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 81/317 (25%), Positives = 156/317 (49%), Gaps = 17/317 (5%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E ++   L   + +LQ L+ E+  S  TL  Y     +   FL    E      +  ++ 
Sbjct: 5   EPLAPSWLNPVEVFLQYLKYEKNYSIHTLLQYRLQLVEVANFLQNKAE------SWLKVQ 58

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
             ++RA+    + + +  R++   LS ++SF KYL+ RK    +    ++  K    LP+
Sbjct: 59  PEQLRAYSMSLKARALSARTINLKLSCVRSFYKYLQIRKTELNNPAEAIKGPKFQKPLPK 118

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L+  Q   L+        +       R+ A++ L+Y  GLR+SE ++    ++   +  
Sbjct: 119 NLDVDQMHQLL------AMNPEDSFGFRDKAMMELMYSSGLRVSELVNANLIDVNLREKE 172

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           +R+ GKG+K RI+P+     +A+ ++   C  +  L  ++ +F   +   ++    +  +
Sbjct: 173 IRVLGKGNKERILPIGGKAIEALQDWL-KCRAEFALPDEVAVFVSKKKCRISTRQVRARM 231

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +      G+      H LRHSFA+H+L + GDLR++Q +LGH  LS TQ+YT+++ ++  
Sbjct: 232 KLWGINQGISSQIHPHKLRHSFASHMLESSGDLRAVQELLGHSSLSATQVYTHLDFQH-- 289

Query: 308 DWMMEIYDQTHPSITQK 324
             + ++YD THP   ++
Sbjct: 290 --LAKVYDNTHPRAKKQ 304


>gi|312130418|ref|YP_003997758.1| tyrosine recombinase xerd [Leadbetterella byssophila DSM 17132]
 gi|311906964|gb|ADQ17405.1| tyrosine recombinase XerD [Leadbetterella byssophila DSM 17132]
          Length = 296

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 88/308 (28%), Positives = 145/308 (47%), Gaps = 18/308 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + +   L++ERGL+  +++SY  D      FL    + K+   T+ +     + AFI
Sbjct: 5   EAIRAFKNYLKLERGLAPNSVESYLRDLGALASFL----DGKVAPNTVEE---DHLYAFI 57

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                  +   +  R LSGIK+F ++L+  KI        +   K    LP  L  K+  
Sbjct: 58  ETISEMGLSSSTQARMLSGIKAFFEFLRLEKIRDTDPTALLVGPKLIRKLPEVLQVKEVE 117

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L++ + L T   T+     N A+L +LY  GLR+SE ++L       ++  L+++GKG 
Sbjct: 118 ALLEGIDLSTPEGTR-----NRAMLEVLYSSGLRVSEVVNLQISRCFFEEGYLQVRGKGS 172

Query: 196 KIRIVPLLPSVRKAILEY--YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R+VP+          Y        D+    +  LF   RG  L+  +    ++     
Sbjct: 173 KTRLVPIGKQAIHYTEIYKTLVRPSLDIKKGYEDHLFLNRRGAALSRVMVFYVVKNAAEA 232

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+  + + HTLRHSFATHL+  G DLR++Q +LGH  + TT+IYT+++       + E 
Sbjct: 233 AGIQKTISPHTLRHSFATHLVEGGADLRAVQEMLGHESILTTEIYTHLDRAFLQQTLRE- 291

Query: 314 YDQTHPSI 321
               HP  
Sbjct: 292 ---FHPRA 296


>gi|308050773|ref|YP_003914339.1| tyrosine recombinase XerD [Ferrimonas balearica DSM 9799]
 gi|307632963|gb|ADN77265.1| tyrosine recombinase XerD [Ferrimonas balearica DSM 9799]
          Length = 295

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 92/304 (30%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +  +L  +RGLS  TL +Y  D  +F  FL+           + +    +IR +++ 
Sbjct: 7   IERFCDDLWAQRGLSDNTLAAYRSDLCRFAEFLSERD------TPLARADSLDIRDYLAH 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R++      S  RSLS ++ F   L +R       +  +   K    LP +L+E +   L
Sbjct: 61  RKSIGAAKTSTARSLSALRRFFADLVRRGEREADPMALIAQPKMDRKLPDSLSEAEVEAL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D            I  R+ A+L LLY  GLR+SE   L  + +   Q  +R+ GKG K 
Sbjct: 121 LD-----APECDDPIQLRDKAMLELLYATGLRVSELTGLQMEQVSLRQGVVRVVGKGGKE 175

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+    +  +  Y        L +N    LF   RG  +    F   ++   +  G+
Sbjct: 176 RLVPMGEQAQHQLEVYLREARGMLLGVNRSDVLFPSKRGVQMTRQTFWHRVKFYAQQSGI 235

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + E++ +
Sbjct: 236 TKPLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQAR----LTELHRE 291

Query: 317 THPS 320
            HP 
Sbjct: 292 HHPR 295


>gi|149376980|ref|ZP_01894734.1| tyrosine recombinase XerC [Marinobacter algicola DG893]
 gi|149358757|gb|EDM47227.1| tyrosine recombinase XerC [Marinobacter algicola DG893]
          Length = 317

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 84/315 (26%), Positives = 162/315 (51%), Gaps = 16/315 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            S  L +    +L+ L  E+  S  T  SY  D ++F +++     E       R ++  
Sbjct: 10  PSATLAEPVAAFLRYLASEKRHSPRTCDSYRDDLKRFAVWV-----EHQPSPAWRSVTSH 64

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++R ++++   + +G RS+ R LS I+ F +YL +  +  ++  L++R  K    LPR  
Sbjct: 65  DLRRYVAQLSREGLGGRSIARHLSAIRRFYEYLLREHLAVDNPALDIRAPKSGKRLPRVA 124

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  Q   L+D      +     ++ R+ ++  L+Y  GLR+SE   L  Q++      +R
Sbjct: 125 DVDQLNHLLD------AAPDDPLEIRDLSMFELMYSSGLRLSELAGLDLQSVDVRGGEVR 178

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG K R++P+     +A+ ++ ++    +  + +  L+   RG  L+    Q  + +
Sbjct: 179 VLGKGRKERLLPVGRRALEALAQWLEVR-GAMAPDGENALYVSRRGDRLSTRSIQSRLSR 237

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G       H LRHSFA+H+L + GDLR++Q +LGH  ++TTQ+YT+++ ++    
Sbjct: 238 WGMSKGADQRLHPHLLRHSFASHMLESSGDLRAVQELLGHADIATTQVYTHLDFQH---- 293

Query: 310 MMEIYDQTHPSITQK 324
           + ++YDQ+HP   ++
Sbjct: 294 LAKVYDQSHPRARRR 308


>gi|307251104|ref|ZP_07533028.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
 gi|306856934|gb|EFM89066.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
          Length = 336

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 88/315 (27%), Positives = 158/315 (50%), Gaps = 17/315 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L  + + +   L IE+  S+ TL +Y+         L+     +  I T ++++   +R 
Sbjct: 38  LYLQTKPYWDYLRIEKQASQHTLSNYQRQLLAVSDMLS-----QAGISTWQEVNSATVRW 92

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            I++   Q +G +S+   L  ++ +  YL +++  + +  + ++  K S  LP+ ++ +Q
Sbjct: 93  IIAQSNKQGLGAKSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQ 152

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           A  L+      TS   +  D R+ A++ L+Y  GLR+SE   L   ++      +R+ GK
Sbjct: 153 AKQLL------TSDSHEPSDLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGK 206

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K RIVP+     +A+  +  +            +F   RG  L+    Q  +++    
Sbjct: 207 GNKERIVPIGSKALEALNRWLAVRNQ--FKPQDNAVFLNKRGGRLSHRSIQLVMQKWGEK 264

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL      H LRHSFATH+L   GDLR+IQ +LGH  L+TTQIYT+++ ++    + +I
Sbjct: 265 QGLESHLHPHKLRHSFATHMLEASGDLRAIQELLGHSNLATTQIYTHLDFQH----LAKI 320

Query: 314 YDQTHPSITQKDKKN 328
           YD  HP   +K + +
Sbjct: 321 YDAAHPRAKRKKQDD 335


>gi|168702641|ref|ZP_02734918.1| integrase/recombinase [Gemmata obscuriglobus UQM 2246]
          Length = 321

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 83/310 (26%), Positives = 149/310 (48%), Gaps = 16/310 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +LL +   +   ++ ERGL++ TL +Y  D  ++  ++     E++ +      +   + 
Sbjct: 5   QLLADIVAFRDYIQSERGLAENTLLAYGRDLARYAHWV-----EQVQLPDYTHPTLKHLA 59

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           A+++    +++   S+ R L  +K F ++L+  +  + + +  + +      +P+ L   
Sbjct: 60  AYVAFLHEEQLAAPSIARHLVALKMFYRFLQLEERASATTVNLLSSPNLWERVPQVLPPP 119

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
              TL+                R+ A+L +LY  G R SE ++L   ++  D    +  G
Sbjct: 120 AVETLI-----TAPQPGDRFHLRDRAMLEVLYATGCRASEVVNLKLNDVYLDSGFCKCVG 174

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQL 250
           KG K R+VPL      A+  Y      +       P  +F    G+PL        +++ 
Sbjct: 175 KGSKQRVVPLNRHAVTALRAYLGGGVDEGGRPAAGPEVVFTSKTGRPLTRIHLWALVKKY 234

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  GLP + + HTLRHSFATHLLS G DLR++Q +LGH  ++TTQIYT+V+     D +
Sbjct: 235 CKRAGLPKTVSPHTLRHSFATHLLSGGADLRTVQELLGHASIATTQIYTHVD----RDRL 290

Query: 311 MEIYDQTHPS 320
             ++ Q HP 
Sbjct: 291 KALHRQFHPR 300


>gi|329956554|ref|ZP_08297151.1| tyrosine recombinase XerD [Bacteroides clarus YIT 12056]
 gi|328524451|gb|EGF51521.1| tyrosine recombinase XerD [Bacteroides clarus YIT 12056]
          Length = 316

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 88/312 (28%), Positives = 148/312 (47%), Gaps = 16/312 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + Q + +E+ LS  T  +Y  D ++ L FL     E I    I  ++  +++ F + 
Sbjct: 17  IRKYQQYIRLEKALSSNTFDAYMTDLQKLLHFL---DGENI---DIPDVTPDDLQRFAAG 70

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I  RS  R LSGIKSF  +L             +   K    +P  L  ++   +
Sbjct: 71  LHDIGIHPRSQARILSGIKSFFHFLVIADYLEADPSELLEGPKIGFKIPEVLTIEEIDRI 130

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +      T    K    RN AIL  LY CGLR+SE  +L   ++  ++  ++++GKG K 
Sbjct: 131 I-----STVDMEKKEGQRNRAILETLYSCGLRVSELCNLKISDLYFEEGFIKVEGKGSKQ 185

Query: 198 RIVPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+ P   K I  ++       +    +  +F    G  ++  +    I++L    G+
Sbjct: 186 RLVPISPRAIKEIKYWFADRNLGKIKKGYEDYVFLARWGNRISRIMVFHMIKELAEKAGI 245

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++       ++E    
Sbjct: 246 TKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIE---- 301

Query: 317 THPSITQKDKKN 328
            HP   +  K++
Sbjct: 302 HHPRNIKYRKEH 313


>gi|49084748|gb|AAT51227.1| PA5280 [synthetic construct]
          Length = 304

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 94/311 (30%), Positives = 152/311 (48%), Gaps = 17/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  +   +L++L  ER +S  TL  Y  D  + L        EK  +     L    +R 
Sbjct: 1   MRADLDAFLEHLRSERQVSAHTLDGYRRDLLKILA-----LAEKAGLSDWNALDTRSLRT 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+++   Q    RSL R LS  +   +YL +           +   K    LPR L+  +
Sbjct: 56  FVARLHQQGQSSRSLARLLSATRGLYQYLLREGRCRHDPANGLSAPKSPRKLPRTLDADR 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           AL L+D      + E  +I  R+ A+L L Y  GLR+SE + L  + +   +  +R++GK
Sbjct: 116 ALQLLDG-----AVEDDFIARRDQALLELFYSSGLRLSELVGLDLEWLDLKEGLVRVRGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+++R +P+  + R+A+  +  L            +F G  GK L P   Q  +RQ    
Sbjct: 171 GNRVRELPVGKAARQALEAWLPLRTQ--AAPEDGAVFIGRSGKRLTPRAIQLRVRQAGVR 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRHSFA+HLL + GDLR++Q +LGH  ++TTQIYT+++ ++    +  +
Sbjct: 229 -ELGQRLHPHMLRHSFASHLLESSGDLRAVQELLGHADIATTQIYTHLDFQH----LASV 283

Query: 314 YDQTHPSITQK 324
           YD+ HP   +K
Sbjct: 284 YDRAHPRAKRK 294


>gi|86142675|ref|ZP_01061114.1| putative tyrosine recombinase [Leeuwenhoekiella blandensis MED217]
 gi|85830707|gb|EAQ49165.1| putative tyrosine recombinase [Leeuwenhoekiella blandensis MED217]
          Length = 298

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 94/303 (31%), Positives = 154/303 (50%), Gaps = 16/303 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++   L+IERGLS+ T+ +Y  D  + + ++  ++ E   I     ++  +++ FI    
Sbjct: 9   DYKLFLKIERGLSENTVVNYGLDISKLIKWIDEHSVEASPIS----ITKEQLQDFI-YTY 63

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +++   S  R +SG+K + +YL       ++    +   K    LP  L+E +   ++D
Sbjct: 64  AKELTASSQARLISGLKGYFEYLVFEDYRKDNPTDLIEAPKVGRKLPDTLSEDEVNRIID 123

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            V L     ++    RN AIL  LYGCGLR+SE L+L   ++  D+  + + GKGDK R 
Sbjct: 124 AVDL-----SRPQGERNRAILETLYGCGLRVSEVLNLKLSDLFFDEGYILVTGKGDKQRF 178

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           VP+ P  +K I  Y D          +    LF   RG  L   +    ++Q  +  G+ 
Sbjct: 179 VPIAPITQKYIEIYRDQIRIHEAPKPEFKNILFLNRRGAQLTRAMIFTLVKQHTQKAGIK 238

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + HT RHSFATHLL NG DLR+IQ +LGH  ++TT++Y +V+  +  D +    +  
Sbjct: 239 KKISPHTFRHSFATHLLQNGADLRAIQQMLGHESITTTEVYMHVDRSHLADVL----NTF 294

Query: 318 HPS 320
           HP 
Sbjct: 295 HPR 297


>gi|212636945|ref|YP_002313470.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella
           piezotolerans WP3]
 gi|212558429|gb|ACJ30883.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella
           piezotolerans WP3]
          Length = 300

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 143/306 (46%), Gaps = 16/306 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +    +L +L   +GLS  TL +Y  D R F         +++    + + S  ++R ++
Sbjct: 9   RAIDLFLDHLWSTKGLSDNTLSAYRTDLRHFDRH------QQLKGLKLVESSQFDVRDYL 62

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           + R  +     S  R +S ++ F  YL   K  +   +  + + K +  LP +L+E    
Sbjct: 63  ATRFDKGFAKTSSARMMSSLRRFFGYLVVNKQISTDPMALLESPKLARKLPDSLSEDDID 122

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+             I+ R+ A+L LLY  GLR+SE + LT + +   Q  +RI GKG 
Sbjct: 123 RLLSE-----PQADDPIECRDKAMLELLYATGLRVSELVGLTMEQLSLRQGLVRIVGKGG 177

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K R+VPL       +  Y      +L        LF   R + +    F   I+      
Sbjct: 178 KERLVPLGELAVGEVENYLKFARVELLKGKQSDVLFPSKRAQQMTRQTFWHRIKLYALRA 237

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            +    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V +      +  ++
Sbjct: 238 NISTELSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATAR----LASLH 293

Query: 315 DQTHPS 320
            + HP 
Sbjct: 294 SEHHPR 299


>gi|239917914|ref|YP_002957472.1| tyrosine recombinase XerD [Micrococcus luteus NCTC 2665]
 gi|239839121|gb|ACS30918.1| tyrosine recombinase XerD [Micrococcus luteus NCTC 2665]
          Length = 321

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 87/326 (26%), Positives = 136/326 (41%), Gaps = 30/326 (9%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
            L    +  L +L +ERGL++ TL +Y  D  ++  +L     E   ++    +    + 
Sbjct: 10  ALAAPFRRHLDHLAVERGLAENTLAAYRRDLARYRRWL-----EAAGVRAPGDVDPGHVA 64

Query: 73  AFISKRRT-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
            F+    T     + +  RS  R L+ ++   ++     +       ++   K    LPR
Sbjct: 65  GFVQALATGDDGGRPLAVRSAARVLAAVRGLHRFWALEGLAETDPARDVHPPKPGTRLPR 124

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ-------- 179
           AL  +Q   L+D V   T         R+ A+L  LYG G RISE + L           
Sbjct: 125 ALPVEQVSALLDAVPTDTPA-----GLRDRALLEFLYGTGARISEVVGLDVDDVVGLAQT 179

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP---FDLNLNIQLPLFRGIRGK 236
                Q  +R+ GKG K R+VP+      A+  +                  LF    G 
Sbjct: 180 GDDGGQPVVRLFGKGSKERVVPIGSYAAAALDAWLVRGRPTIMAGAARSTPALFVNACGG 239

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L+       +++     GL    + HTLRH FATHLL+ G D+R +Q +LGH  ++TTQ
Sbjct: 240 RLSRQSAWAVLKRAAERAGLEADVSPHTLRHCFATHLLAGGADVRVVQELLGHASVTTTQ 299

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSIT 322
           +YT V      D + E+Y   HP   
Sbjct: 300 VYTLVT----VDSLREVYSAAHPRAR 321


>gi|270264257|ref|ZP_06192524.1| site-specific tyrosine recombinase XerC [Serratia odorifera 4Rx13]
 gi|270041906|gb|EFA15003.1| site-specific tyrosine recombinase XerC [Serratia odorifera 4Rx13]
          Length = 303

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 79/315 (25%), Positives = 148/315 (46%), Gaps = 17/315 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
            V+  L +    +L+ L++ER LS LT  SY    +  +        +++ +     L  
Sbjct: 3   PVAASLQQPVDAFLRYLKVERQLSPLTQLSYSRQLQALMA-----LAQEMGVTEWPALDA 57

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++R   ++ +   +   SL   LS ++SFL +   +     +    +R  +    LP+ 
Sbjct: 58  AKVRMLAARSKRAGLQSSSLALRLSALRSFLDWQVSQGALIANPAKGIRTPRSGRHLPKN 117

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++  +   L++  L         +  R+ A+L ++YG GLR+SE + L  +++      +
Sbjct: 118 IDVDEINQLLNIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGLDCRHVDLAAGDI 171

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +P+  +    +  +      DL       +F   +GK ++    Q+   
Sbjct: 172 WVLGKGSKERKLPIGRTAVTWLEHWL--AMRDLFGPADDAMFLSNQGKRISTRNVQKRFA 229

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     G+      H LRHSFATH+L + GDLR++Q +LGH  L+TTQIYT+++ ++   
Sbjct: 230 EWGVKQGVNSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH--- 286

Query: 309 WMMEIYDQTHPSITQ 323
            +  +YD  HP   +
Sbjct: 287 -LANVYDAAHPRAKR 300


>gi|227875332|ref|ZP_03993474.1| tyrosine recombinase [Mobiluncus mulieris ATCC 35243]
 gi|227844237|gb|EEJ54404.1| tyrosine recombinase [Mobiluncus mulieris ATCC 35243]
          Length = 319

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 86/313 (27%), Positives = 146/313 (46%), Gaps = 22/313 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q++L  L +ERG S  T+ +Y+ D ++++ +L     +     T+ Q++  ++  F+   
Sbjct: 18  QDFLNYLSVERGASPHTIAAYQRDLQRYVAYLQILGRD-----TLAQVTEVDLEGFVRAL 72

Query: 79  RTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
                    +G  S++R L+  +S+ +YL        +   +++  K    LP  L+ ++
Sbjct: 73  GDGFASFPPLGSTSVRRCLAAARSWHRYLFDSGSLGANVASSVKPAKLPRRLPETLSLEE 132

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ--STLRIQ 191
              L    L   S        R+ A+L  LY  G RISEA++L   +I  +   + +R+ 
Sbjct: 133 MEAL----LAAASSPGDSNSLRDRALLEFLYASGARISEAMNLVLDDIDFETEPALVRLF 188

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQ 249
           GKG K RI  L     +A+  Y       L    Q    +F    GKP++       I+ 
Sbjct: 189 GKGRKERISMLGHQACQALQAYLVRVRPTLAEKGQSRGRVFLNTYGKPMSRQTAWAIIQA 248

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +   +      HTLRH FATHLL  G D+R +Q +LGH  ++TT+IYT V+ +     
Sbjct: 249 AAKRAQIDRPVHPHTLRHCFATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQ----M 304

Query: 310 MMEIYDQTHPSIT 322
           ++E+Y   HP   
Sbjct: 305 LLEVYASAHPRAR 317


>gi|255282461|ref|ZP_05347016.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469]
 gi|255267045|gb|EET60250.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469]
          Length = 304

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 83/312 (26%), Positives = 153/312 (49%), Gaps = 16/312 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++ ++ ++ + +   LE E+  S  T+ SY+ D ++   +L+    EK     ++ ++ T
Sbjct: 7   LAPQIQQDMRRFADYLEEEKNASNSTVMSYQRDLKKLFHYLSGKGVEK-----VQDVTAT 61

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            + ++I +   +     S+ R+++ I++F  +L K K  TE    N++        P  L
Sbjct: 62  SLNSYILQMEKEGFSTSSVSRTIASIRAFFHFLVKTKAVTEDPSDNLKAPHVEKKTPEIL 121

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
             ++ + L++   L ++        R+ A+L LLY  G+R+SE +S+   ++      + 
Sbjct: 122 TLEETVQLLNQPELDSAK-----GIRDKAMLELLYATGMRVSELISMKLTDVNMAMGYVL 176

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            +   DK R++P      KA+  Y +      L       LF    GK ++   F + I+
Sbjct: 177 CRDS-DKERVIPFGTEAEKALKRYLEESRSVLLKGKESEFLFVNCSGKSMSRQGFWKIIK 235

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                 G+    T HTLRHSF  HL+ NG DLR++Q ++GH  +STTQIY ++N +    
Sbjct: 236 FYSAQAGITKDITPHTLRHSFGAHLVQNGADLRAVQEMMGHSDISTTQIYMDMNVRR--- 292

Query: 309 WMMEIYDQTHPS 320
            + EIY + HP 
Sbjct: 293 -VREIYAKAHPR 303


>gi|331012748|gb|EGH92804.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 299

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 90/311 (28%), Positives = 149/311 (47%), Gaps = 17/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +    +  +L  ER +S  TL++Y  D  + L +      +K  + +   L    +R+
Sbjct: 1   MEQHLDAYCMHLRSERQVSPHTLEAYRRDLGKVLAYC-----QKAQLSSWNDLDIQHLRS 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F +++  Q    RSL R LS ++ F KYL +  I        +   K    LP+ L+  +
Sbjct: 56  FTARQHQQGQSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGDRRLPKTLDTDR 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D  +     E  ++  R+ AIL LLY  GLR+SE   L    +      +++ GK
Sbjct: 116 TAQLLDGGV-----EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R++P+    R+A+  +  L    L       +F   +GK L P   Q  ++     
Sbjct: 171 GSKTRVLPVGSKARQALEIWLPLR--ALTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGER 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L  +   H LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +
Sbjct: 229 -ELGQNLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATV 283

Query: 314 YDQTHPSITQK 324
           YD  HP   +K
Sbjct: 284 YDSAHPRAKRK 294


>gi|315633750|ref|ZP_07889040.1| tyrosine recombinase XerD [Aggregatibacter segnis ATCC 33393]
 gi|315477792|gb|EFU68534.1| tyrosine recombinase XerD [Aggregatibacter segnis ATCC 33393]
          Length = 297

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 95/302 (31%), Positives = 154/302 (50%), Gaps = 17/302 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L I +GLS  T+QSY  D      +L   +E K+++  +  +   +++ F+ +R  
Sbjct: 10  FLNELWIGKGLSPNTVQSYRLDLTALCDWL---SERKLSLLDLDSV---DLQTFLGERVE 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     S  R LS I+   +YL + K  T+     + + K  + LP+ L E+Q   L++ 
Sbjct: 64  QGYKATSTARLLSAIRKLFQYLYQEKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDLLNV 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L        I+ R+ A+L LLY  GLR++E +SL   +I  +Q  +R+ GKG+K RIV
Sbjct: 124 QSLEQP-----IELRDKAMLELLYATGLRVTELVSLHTDSISLNQGVVRVIGKGNKERIV 178

Query: 201 PLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+       + ++     P  LN      LF   RG  +    F   I+       +  +
Sbjct: 179 PMGEEATHWVKQFMLFARPILLNGQSSDVLFPSRRGTQMTRQTFWHRIKHYAVLAEIDSN 238

Query: 260 -TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++++ H
Sbjct: 239 MLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER----LKRLHERYH 294

Query: 319 PS 320
           P 
Sbjct: 295 PR 296


>gi|325576773|ref|ZP_08147388.1| site-specific tyrosine recombinase XerC [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160979|gb|EGC73097.1| site-specific tyrosine recombinase XerC [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 295

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 96/308 (31%), Positives = 149/308 (48%), Gaps = 17/308 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +   L IER LS  TL +Y+      L  LA     +  IQ  +Q++ + +R  +++
Sbjct: 5   LNQYWDYLRIERQLSPHTLTNYQHQLNAILAILA-----EKGIQHWQQVNPSVVRLILAE 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R   + ++SL   LS ++ F  YL  +     +    +   K+S  LP+ ++ +Q   L
Sbjct: 60  SRKHGLKEKSLALRLSALRQFFSYLVHQGQMKVNPATGISAPKQSKHLPKNIDAEQVQKL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           + N           ID R+ A++ L+Y  GLR+SE   L   +I      +R+ GKG+K 
Sbjct: 120 LSN------DSKDPIDLRDRAMMELMYSSGLRLSELQGLNLNSINTRVREVRVIGKGNKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RIVP       AI ++  + P  L       +F   +G  L     Q+ +       GL 
Sbjct: 174 RIVPFGRYASHAIQQWLKVRP--LFNPKDDAIFVSQQGNRLTHRSIQKRMENWGIRQGLN 231

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    + E+YDQ 
Sbjct: 232 SHLNPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEVYDQA 287

Query: 318 HPSITQKD 325
           HP   +K 
Sbjct: 288 HPRAKRKK 295


>gi|146305305|ref|YP_001185770.1| site-specific tyrosine recombinase XerC [Pseudomonas mendocina ymp]
 gi|145573506|gb|ABP83038.1| tyrosine recombinase XerC subunit [Pseudomonas mendocina ymp]
          Length = 315

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 91/311 (29%), Positives = 148/311 (47%), Gaps = 17/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
                  +L++L  ER +S  TL  Y  D  + L F      E   +     L    +R 
Sbjct: 18  FEAHLDAYLEHLRRERQVSVHTLDGYRRDLGKLLAFC-----EAEGLSDWAALDTRSLRR 72

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            I++   Q +  RSL R LS  +   +YL +  +        +   K+   LPR L+  +
Sbjct: 73  LIARLHAQGLASRSLARLLSATRGLYQYLLREGLCRHDPAAGLSPPKRERRLPRTLDADR 132

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           +  L+D      + E  +I  R+ A+L L Y  GLR+SE + L    +      +R++GK
Sbjct: 133 SAQLLDG-----AVEDDFIARRDQAMLELFYSSGLRLSELVGLDVDGLDLPAGLVRVRGK 187

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R +P+    R+A+ ++  L    L       +F   +G+ L P   Q  +RQ    
Sbjct: 188 GNKTRELPVGSMARQALEQWLPLR--KLAGPSDGAVFISQQGRRLGPRAVQLRVRQAGVR 245

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRHSFA+H+L +  DLR++Q +LGH  ++TTQIYT+++ ++    +  +
Sbjct: 246 -ELGQHLHPHMLRHSFASHMLESSQDLRAVQELLGHADIATTQIYTHLDFQH----LATV 300

Query: 314 YDQTHPSITQK 324
           YDQ HP   +K
Sbjct: 301 YDQAHPRAKRK 311


>gi|78357014|ref|YP_388463.1| tyrosine recombinase XerD subunit [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219419|gb|ABB38768.1| tyrosine recombinase XerD subunit [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 309

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 91/324 (28%), Positives = 153/324 (47%), Gaps = 16/324 (4%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M  N+     +        ++LQ+L I RGLS+ TL SY  D + FL FL          
Sbjct: 1   MLKNSQKNEAAAPPHPIVDSFLQHLLISRGLSENTLSSYGTDLQSFLDFLHHKKSR---- 56

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             +  ++   +  +I   R + +  +SL R L+ ++   +Y  ++ + +E+    + N K
Sbjct: 57  --LEDVTDQSLLLYIMHLRRRGLSSKSLARQLAALRGLFRYGTEQNLLSENPCRFLENPK 114

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
              SLP  L++++   +     L      + +  R+  +L LLY  GLR+SE ++L P +
Sbjct: 115 IPKSLPEYLSQQEIAEV-----LAQPDLKEKLGFRDRTMLELLYAAGLRVSELITLKPLD 169

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                  +R+ GKG K R VP+  +  + +  Y           ++  LF    GK L  
Sbjct: 170 FDPLTGLVRVFGKGAKERTVPVHATAARFLGAYLRD-WRPAFKPVENILFLNRSGKGLTR 228

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               + +R+     G+    + HT RHSFATHLL  G DLR++Q +LGH  ++ T+IYT+
Sbjct: 229 QAVWKIVRRHVADAGIHRQISPHTFRHSFATHLLEGGADLRTVQLLLGHADIAATEIYTH 288

Query: 301 VNSKNGGDWMMEIYDQTHPSITQK 324
           V ++     +  I+ Q HP    K
Sbjct: 289 VETER----LRRIHKQFHPRSKIK 308


>gi|317494831|ref|ZP_07953242.1| tyrosine recombinase XerC [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917156|gb|EFV38504.1| tyrosine recombinase XerC [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 303

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 76/310 (24%), Positives = 151/310 (48%), Gaps = 17/310 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L    + +L+ L +ER LS  T++SY       +  ++        ++  RQL   ++R 
Sbjct: 8   LALPVEAFLRFLRVERQLSPHTIESYHHQLMAIIEIVSAS-----GLRDWRQLDSNQVRM 62

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             ++ +   +   S+   LS ++SFL +   + + + +    +   K++  LP+ L+   
Sbjct: 63  ITARSKRMGLEAASIALRLSSLRSFLDWQVSQGVMSVNPAKGISAPKQARHLPKNLDVDD 122

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++         +  +  R+  +L ++YG GLR+SE + L  +++      + + GK
Sbjct: 123 VNRLLEI------DSSDPLAVRDRTMLEVMYGAGLRLSELVGLDCRHMNMASGEVWVLGK 176

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R +P+  +    + ++  L   ++   +   +F    GK ++    Q+   +    
Sbjct: 177 GSKERKLPIGRTAIHWLEQWLPLR--EIYDPVDDAVFVSKLGKRISVRSVQKRFAEWGVK 234

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+      H LRHSFATH+L + GDLR++Q +LGH  L+TTQIYT+++ ++    + ++
Sbjct: 235 QGVTSHINPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----LAKV 290

Query: 314 YDQTHPSITQ 323
           YD  HP   +
Sbjct: 291 YDAAHPRAKR 300


>gi|83313349|ref|YP_423613.1| site-specific tyrosine recombinase XerC [Magnetospirillum
           magneticum AMB-1]
 gi|82948190|dbj|BAE53054.1| Integrase [Magnetospirillum magneticum AMB-1]
          Length = 314

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 121/322 (37%), Positives = 179/322 (55%), Gaps = 9/322 (2%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M  + +      +L +  ++W Q L  ER  S  TL  Y  D   FL FL  +   +  +
Sbjct: 1   MPPSPIHFAAKADLARAVESWWQWLGSERRASSHTLDGYGRDLAAFLTFLTEHLAAEPDL 60

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             +  L   + RAF+++R    +G  SL R +S ++ F K+L +  +     +  +++ +
Sbjct: 61  AALASLGAGDFRAFLARRTQDGLGRSSLARLMSTLRGFFKFLDRHDLVHNPALKAVKSPR 120

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
              S+P+ L   +AL  + +      H+  W+ AR+ A+  LLYG GLR+ EALSLT ++
Sbjct: 121 PPKSVPKPLAPDEALEALSS--AGELHDEPWLAARDVALFTLLYGAGLRLGEALSLTRRD 178

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
            +    T+ I GKG+K R+VP+LP VR AI +Y    P+        P+F G RG PLNP
Sbjct: 179 -LPKGDTMVITGKGNKQRVVPVLPVVRDAIADYLKRLPYP--AEPTDPIFLGARGGPLNP 235

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           GV QR +R+LR+ +GLP + T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ YT 
Sbjct: 236 GVVQRQMRRLRQMMGLPETATPHALRHSFATHLLAGGGDLRTIQELLGHSSLSTTQRYTE 295

Query: 301 VNSKNGGDWMMEIYDQTHPSIT 322
           V++      +  +Y   HP   
Sbjct: 296 VDAAR----LTRVYRDAHPRAK 313


>gi|50123101|ref|YP_052268.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|49613627|emb|CAG77078.1| integrase/recombinase [Pectobacterium atrosepticum SCRI1043]
          Length = 311

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 85/325 (26%), Positives = 153/325 (47%), Gaps = 19/325 (5%)

Query: 1   MEGNNLP--EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI 58
           M     P     S  L  +   +L+ L++ER LS LTL SY       +  L+       
Sbjct: 1   MSRQPAPSEAASSSPLQTDVDAFLRYLKVERQLSPLTLTSYSRQLSAVITILSA-----A 55

Query: 59  TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
            I   R L  + +R+ +S+ +   +   SL   LS ++SFL ++  R + T +    +  
Sbjct: 56  GIADWRALDASSVRSVVSRSKRDGLHSGSLALRLSALRSFLDWMVSRGVLTANPAKGVST 115

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            +    LP+ ++  +   L++  L         +  R+  +L ++YG GLR++E + +  
Sbjct: 116 PRAGRPLPKNMDVDEVNRLLEIDL------DDPLAVRDRTMLEVMYGAGLRLAELVGMDY 169

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           Q+I      + + GKG K R +P+  +    +  +  L   +L       +F   +G+ +
Sbjct: 170 QHIDLASGEIWVMGKGSKERKLPIGKTAVTWLERWLALR--ELFGPQDDAVFISNQGRRI 227

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +    Q+   +     G+      H LRHSFATH+L + GDLR++Q +LGH  L+TTQIY
Sbjct: 228 SMRNVQKRFAEWGVKQGINSHVHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIY 287

Query: 299 TNVNSKNGGDWMMEIYDQTHPSITQ 323
           T+++ ++    +  +YD  HP   +
Sbjct: 288 THLDFQH----LASVYDAAHPRAKR 308


>gi|117924957|ref|YP_865574.1| tyrosine recombinase XerD subunit [Magnetococcus sp. MC-1]
 gi|117608713|gb|ABK44168.1| tyrosine recombinase XerD subunit [Magnetococcus sp. MC-1]
          Length = 296

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 82/303 (27%), Positives = 149/303 (49%), Gaps = 16/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L IE GL+  TL +Y  D      F A          T+ ++   ++  +I + 
Sbjct: 8   ERFLDELLIEHGLAANTLIAYRRDLDALRSFCASRN------LTLPEIQRQDVLEYIGEL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   ++ R LS ++   ++L  + I +E     +   K    LP  L+E +   L+
Sbjct: 62  AQKSLTPSTVARKLSAMRRLFRHLVDKGIRSEDPTGGVYRPKPQRKLPNTLSEAETEALL 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                +    +  +  R++A+L L+Y  GLR+SE ++LT   + ++   +R+ GKG+K R
Sbjct: 122 -----YAPDTSTELGMRDAAMLELMYATGLRVSELVTLTLDGLDEENGFVRVIGKGNKER 176

Query: 199 IVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           IVP+  +  + ++ Y        L       LF   RG  +    F   +++      + 
Sbjct: 177 IVPMGEAATEMVIRYRHSARQVLLKGGRCNDLFLSNRGAAMTRHNFWHIVKRYAYEANIM 236

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H +RH+FATHLL++G DLR++Q +LGH  +STT+IYT+V +      + +++DQ 
Sbjct: 237 KPLSPHGIRHAFATHLLNHGADLRAVQMMLGHADISTTEIYTHVANAR----LKKLHDQL 292

Query: 318 HPS 320
           HP 
Sbjct: 293 HPR 295


>gi|322515579|ref|ZP_08068560.1| tyrosine recombinase XerC [Actinobacillus ureae ATCC 25976]
 gi|322118382|gb|EFX90648.1| tyrosine recombinase XerC [Actinobacillus ureae ATCC 25976]
          Length = 331

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 83/316 (26%), Positives = 160/316 (50%), Gaps = 17/316 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
            L  + + +   L IE+  S  TL +Y+   RQ L     +++    I   ++++   +R
Sbjct: 33  ALYLQTKPYWDYLRIEKQASPHTLSNYQ---RQLLAVSEMFSQ--AGIGAWQEVNVAAVR 87

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
             +++   Q +  +S+   L  ++ +  YL +++  T +  L +++ K    LP+ ++ +
Sbjct: 88  WMLTQSHKQGLSAKSIGLRLVALRQWFNYLVQQEQMTVNPALGIKSPKVGKHLPKNIDAE 147

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q   L++      +  ++ ++ R+ A++ L+Y  GLR+SE   L   ++  +   +++ G
Sbjct: 148 QIGQLLN------TETSEPLELRDLAMMELMYSSGLRLSELQGLDLGDMDLNAREVKVLG 201

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG+K RI+P+     +A+  +               LF   RG  L+    Q  +++  +
Sbjct: 202 KGNKERILPIGTKALQALQAWLGGRHD--FNPQDNALFLNKRGGRLSHRSIQLAMQKWGK 259

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L   GDLR++Q +LGH  LSTTQIYT+++ ++    + +
Sbjct: 260 KQGLETHLHPHKLRHSFATHMLEASGDLRAVQELLGHSSLSTTQIYTSLDFQH----LAQ 315

Query: 313 IYDQTHPSITQKDKKN 328
           IYD  HP   +K ++ 
Sbjct: 316 IYDAAHPRARRKKEEE 331


>gi|325299547|ref|YP_004259464.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170]
 gi|324319100|gb|ADY36991.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170]
          Length = 316

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 91/306 (29%), Positives = 150/306 (49%), Gaps = 16/306 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            + Q L++ER LS  T+ +Y  D  + L +L     E I    I  ++  ++  F +   
Sbjct: 23  KYRQYLKLERSLSGNTIDAYLTDLDKLLAYLTL---EGIG---ITDVTLQDLENFSAGLH 76

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              I  RS  R LSGI+SF ++L       +     + + +    LP  L  ++   L+ 
Sbjct: 77  DIGIHPRSQARILSGIRSFFRFLTLDDYIRQDPSELLESPQIGKHLPDVLTVEEIDALI- 135

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                   ET     RN AIL  LY CGLR+SE  +L   ++  D+  ++++GKG K R+
Sbjct: 136 ----GAIDETTPEGQRNRAILETLYSCGLRVSELCNLKLSDLYLDEGFIKVEGKGSKQRL 191

Query: 200 VPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+ P     +  Y+    +  +    +  +F    GK ++  +    I++L   +GL  
Sbjct: 192 VPISPRAVNELKNYFTERGYAKIKPGYEDFVFISRFGKNISRIMVFHIIKELAERIGLKK 251

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + + HT RHSFATHLL  G +LR+IQ++LGH  + TT+IYT+++       ++E     H
Sbjct: 252 TISPHTFRHSFATHLLEGGANLRAIQAMLGHESIGTTEIYTHIDRSMLRQEIIE----HH 307

Query: 319 PSITQK 324
           P   +K
Sbjct: 308 PRNKKK 313


>gi|94986683|ref|YP_594616.1| site-specific recombinase [Lawsonia intracellularis PHE/MN1-00]
 gi|94730932|emb|CAJ54295.1| site-specific recombinase [Lawsonia intracellularis PHE/MN1-00]
          Length = 306

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 92/301 (30%), Positives = 140/301 (46%), Gaps = 16/301 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            WL  L  ERGLS  T+Q+Y+ D   F +F                +    I  FI   R
Sbjct: 12  KWLDKLISERGLSHNTIQAYKQDIDVFYLFFQDAG------CNFNSIDDEYIMLFIIWLR 65

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +    R+L R LS I++F  +  +  I   +  L +   K  + LP  L++ + L L+ 
Sbjct: 66  KRGDSSRTLARRLSSIRNFFHWCVEEDILLSNPALLIDGPKLPSLLPNILSQDEMLRLL- 124

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                T   T  +  R+  IL LLY  G+R+SE + +   +   D+  +++ GKG K R 
Sbjct: 125 ----TTPDITNKLGFRDKVILELLYASGIRVSELIGVHVLDFDQDKGIIKVFGKGGKERY 180

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +PL  S  K ++ Y       +   I+  LF    GK L      + I++      +  S
Sbjct: 181 IPLHSSAMKLLIHYVQ-KIRPMFTPIEKFLFLNRSGKGLTRQAIWKIIKRYALLASINKS 239

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HT RH+FATHLL  G DLRS+Q +LGH  +S T++YT+V      D +  I+   HP
Sbjct: 240 ISPHTFRHTFATHLLEGGADLRSVQLLLGHVDMSATELYTHV----QSDRLKYIHSMFHP 295

Query: 320 S 320
            
Sbjct: 296 R 296


>gi|23014819|ref|ZP_00054617.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1]
          Length = 314

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 120/314 (38%), Positives = 175/314 (55%), Gaps = 9/314 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
               +L +  ++W Q L  E+  S  TL  Y  D   FL FL  +   +  +  +  L  
Sbjct: 9   AAKADLARAVESWRQWLGSEKRASAHTLDGYGRDLAAFLTFLTEHLAAEPDLAALAALGP 68

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            + RAF+++R    +G  SL R +S ++ F K+L +  +     I  +++ +   S+P+ 
Sbjct: 69  GDFRAFLARRTQDGLGRSSLARLMSTLRGFFKFLDRHGLVHNPAIKAVKSPRPPKSIPKP 128

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L   +AL  + +      H+  W+ AR+ A+  LLYG GLR+ EALSL  ++ +    T+
Sbjct: 129 LAPDEALEALSS--AGELHDEPWLAARDVALFSLLYGAGLRLGEALSLLRRD-LPKGDTM 185

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            I GKG+K R+VP+LP VR AI +Y    PF        P+F G RG PLNPGV QR +R
Sbjct: 186 VITGKGNKQRVVPVLPVVRDAIADYLKRLPFP--SESTDPVFLGARGGPLNPGVVQRQMR 243

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +LR+ +GLP + T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ YT V++     
Sbjct: 244 RLRQVMGLPDTATPHALRHSFATHLLAGGGDLRTIQELLGHSSLSTTQRYTEVDAAR--- 300

Query: 309 WMMEIYDQTHPSIT 322
            +  +Y   HP   
Sbjct: 301 -LTRVYRDAHPRAK 313


>gi|189465186|ref|ZP_03013971.1| hypothetical protein BACINT_01531 [Bacteroides intestinalis DSM
           17393]
 gi|189437460|gb|EDV06445.1| hypothetical protein BACINT_01531 [Bacteroides intestinalis DSM
           17393]
          Length = 316

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 90/311 (28%), Positives = 147/311 (47%), Gaps = 16/311 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + Q L++E+ LS  TL +Y  D  + L FL     + +       ++  +++ F + 
Sbjct: 17  IRKYQQYLKLEKALSANTLDAYLTDLNKLLCFLKTENIDML------AVTLDDLQRFAAG 70

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I  RS  R LSGIKSF  +L       +     +   K    LP  L  ++  T+
Sbjct: 71  LHDIGIHPRSQARILSGIKSFFHFLVMADYREDDPSELLEGPKIGFKLPEVLTVEEIDTI 130

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +      T   +K    RN AIL  LY CGLR+SE  +L    +  D+  ++++GKG K 
Sbjct: 131 I-----STVDMSKKEGQRNRAILETLYSCGLRVSELCNLKLSELYFDEGFIKVEGKGSKQ 185

Query: 198 RIVPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+ P   K I  +        +    +  +F    G  ++  +    I++L    G+
Sbjct: 186 RLVPISPRAIKEIKYWLLDRNLGKIKKGFEDYVFLARWGNSISRIMVFHLIKELAEKAGI 245

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++       ++E    
Sbjct: 246 TKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIE---- 301

Query: 317 THPSITQKDKK 327
            HP   +  K 
Sbjct: 302 HHPRNIKYRKD 312


>gi|257874138|ref|ZP_05653791.1| site-specific recombinase [Enterococcus casseliflavus EC10]
 gi|257808302|gb|EEV37124.1| site-specific recombinase [Enterococcus casseliflavus EC10]
          Length = 299

 Score =  256 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 96/307 (31%), Positives = 147/307 (47%), Gaps = 17/307 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ + + L +ERG S+ T ++Y+ D   F  FL     E         + Y ++R ++S 
Sbjct: 7   QEEFFRYLIVERGYSEKTKKAYQEDMNDFFHFLKESGNE-----DPLAVEYRDVRVYLSY 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S+ R ++ ++SF ++L K +I  E+    +   KK+  LPR   EK+   L
Sbjct: 62  LTERGYSRNSISRKMASLRSFYQFLTKHEIVKENPFAYIHLKKKNAKLPRFFYEKEMDAL 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
             +V        + +  RN A+L +LYG GLR+SE  SLT   I  +   L I GKG+K 
Sbjct: 122 FQSV-----AGDEPLQQRNQALLEVLYGSGLRVSECSSLTLGAIDWESGVLLIHGKGNKD 176

Query: 198 RIVPLLPSVRKAILEYYDLCP---FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           R VP     + A+  Y         +        LF    G  +     +  + Q+ R  
Sbjct: 177 RYVPFGSYAQAAVKRYLSSGRKQLMEKQNKEHEVLFVNHLGDGITATGIEYVLNQIIRKS 236

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            L      H LRH+FATHLL+NG D+R++Q +LGH  LSTTQIY +V      D + + Y
Sbjct: 237 SLDSKIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVT----KDSLQKNY 292

Query: 315 DQTHPSI 321
            Q HP  
Sbjct: 293 RQFHPRA 299


>gi|261823389|ref|YP_003261495.1| site-specific tyrosine recombinase XerC [Pectobacterium wasabiae
           WPP163]
 gi|261607402|gb|ACX89888.1| tyrosine recombinase XerC [Pectobacterium wasabiae WPP163]
          Length = 311

 Score =  256 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 81/310 (26%), Positives = 150/310 (48%), Gaps = 17/310 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L  +   +L+ L+ ER LS LTL SY       +  L+        +   R+L  + +R+
Sbjct: 16  LQTDVDAFLRYLKAERQLSPLTLTSYSRQLSAVITILSA-----AGVVDWRKLDASGVRS 70

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            +S+ +   +   SL   LS ++SFL ++  R + T +    +   +    LP+ ++  +
Sbjct: 71  VVSRSKRDGLHSASLALRLSALRSFLDWMVSRGVLTANPAKGVSTPRAGRPLPKNMDVDE 130

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++  L         +  R+  +L ++YG GLR++E + +  Q+I      + + GK
Sbjct: 131 MNRLLEIDL------DDPLAVRDRTMLEVMYGAGLRLAELVGMDYQHIDLASGEVWVVGK 184

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R +P+  +    +  +  L   +L       +F   +G+ ++    Q+   +    
Sbjct: 185 GSKERKLPIGKTAVTWLERWLALR--ELFGPQDNAVFISNQGRRISMRNVQKRFAEWGVK 242

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+      H LRHSFATH+L + GDLR++Q +LGH  L+TTQIYT+++ ++    +  +
Sbjct: 243 QGVNSHVHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----LASV 298

Query: 314 YDQTHPSITQ 323
           YD  HP   +
Sbjct: 299 YDAAHPRAKR 308


>gi|91792109|ref|YP_561760.1| tyrosine recombinase XerD [Shewanella denitrificans OS217]
 gi|91714111|gb|ABE54037.1| Tyrosine recombinase XerD [Shewanella denitrificans OS217]
          Length = 303

 Score =  256 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 98/301 (32%), Positives = 139/301 (46%), Gaps = 16/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L   +GLS  TL SY  D R F  +LA           +   S   +R +++ R+ 
Sbjct: 17  FLDALWSSKGLSNNTLASYGTDLRHFQRYLAAQQ------LNLLDASQETVRQYLAWRQE 70

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     S  R +S ++ F  Y    K         + + K S  LP AL+E +   L+  
Sbjct: 71  QGFAKSSSARLMSSLRRFYAYWLSLKRIAIDPCAKLASPKLSRGLPAALSEAEVDALLSE 130

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                      I+ R+ A+L LLY  GLR++E +SLT   I   Q  +RI GKG K R+V
Sbjct: 131 -----PAADDPIEIRDKAMLELLYATGLRVTELVSLTMDQISLRQGLVRITGKGGKERLV 185

Query: 201 PLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           PL       +  Y  L   +L        LF   RG  +    F   I+       +   
Sbjct: 186 PLGELAVAEVDTYLSLARSELLKGKQSEVLFPSKRGTMMTRQTFWHRIKHYALRASIATE 245

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + +++ Q HP
Sbjct: 246 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKAR----LQDLHRQHHP 301

Query: 320 S 320
            
Sbjct: 302 R 302


>gi|147677583|ref|YP_001211798.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
 gi|189030080|sp|A5D2W6|XERC_PELTS RecName: Full=Tyrosine recombinase xerC
 gi|146273680|dbj|BAF59429.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
          Length = 306

 Score =  256 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 92/311 (29%), Positives = 153/311 (49%), Gaps = 14/311 (4%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
              N+L  L +E+  S  T +SY+ D    L + A    ++        + +   R +++
Sbjct: 4   HIDNFLVYLRVEKNASPRTTESYQKDLFHGLDYFASRLGKEDHAIVPSDIDHRIFRHYLA 63

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             + Q +   ++ R L+  +SF +YL + KI   + +L + + K    LPR L E +A  
Sbjct: 64  HMQKQGLARATMARRLAAWRSFYRYLYREKIIDGNPLLRVASPKLEKRLPRFLYEDEAKE 123

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           LV+          + +  R+ A+L  LY  GLRISE + L   ++      +R+ GK  +
Sbjct: 124 LVE-----APDTKQPLGMRDRALLETLYAGGLRISELVLLDLGDLDISSGYIRVTGKRAR 178

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLN-----IQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            R+VPL     +A+  Y       L  N     I   LF   RG+ L+    ++ + +  
Sbjct: 179 ERLVPLGSMAVEALQAYLAKARPRLMANSVAKKINNALFLNCRGERLSARGIRKILDKYV 238

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             + L    + HTLRHSFATHLL+ G DLRS+Q ++GH RLS+TQ+YT+V  +     + 
Sbjct: 239 EKVSLERKISPHTLRHSFATHLLNAGADLRSVQELMGHVRLSSTQVYTHVTGER----LK 294

Query: 312 EIYDQTHPSIT 322
           ++Y ++HP   
Sbjct: 295 KVYRKSHPRAK 305


>gi|297571450|ref|YP_003697224.1| tyrosine recombinase XerD [Arcanobacterium haemolyticum DSM 20595]
 gi|296931797|gb|ADH92605.1| tyrosine recombinase XerD [Arcanobacterium haemolyticum DSM 20595]
          Length = 310

 Score =  256 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 96/316 (30%), Positives = 151/316 (47%), Gaps = 21/316 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E  +  ++++ +L IER LS  TL +Y  D   +   L     E  ++ ++  +S  +  
Sbjct: 6   EFDRALRDYVAHLGIERSLSDNTLGAYRRDLTHYKEHL-----ELRSVASLAAISPEDAA 60

Query: 73  AFISKRRTQK----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           +F+   R       +   S+ R ++ ++ F ++L    ITT     ++   K    LP+A
Sbjct: 61  SFVEYLRDGSAGSVMATSSVARMVTAVRRFHEFLLAEGITTTDASADLHPPKIGMRLPKA 120

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           +   +   L    L   +     I  R+ A+L +LYG G RISE + LT  ++  + +T+
Sbjct: 121 ITIPEMEQL----LAVVARGDDAISTRDRALLEILYGTGARISEVVGLTVDDMSCENATI 176

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQR 245
           R+ GKG K RI+PL     +AI  Y +    +L      P    F   RGK L+      
Sbjct: 177 RLFGKGRKERILPLGTYAIEAIRAYLNHGRTELVARSAAPTSSFFLNKRGKTLSRQSAWG 236

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            I+ +    GL    + HT RHSFATHLL  G D+R +Q +LGH  ++TTQIYT V    
Sbjct: 237 VIQAVAEEAGLT-DISPHTFRHSFATHLLQGGADVRVVQEMLGHSSVTTTQIYTKVT--- 292

Query: 306 GGDWMMEIYDQTHPSI 321
             + + EIY   HP  
Sbjct: 293 -RETLKEIYATAHPRA 307


>gi|294340185|emb|CAZ88557.1| Tyrosine recombinase xerD [Thiomonas sp. 3As]
          Length = 317

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 89/312 (28%), Positives = 147/312 (47%), Gaps = 23/312 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +   L +E GLS  TL +Y  D      +LAF   + +   T+R     +++A+I+ 
Sbjct: 21  IDRFCDALWLEDGLSPNTLAAYRRDLTLMARWLAFSQRQPLIEATLR-----DVQAYIAA 75

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  Q     S  R L  ++ F ++  +  + T+   L +   ++    P+ L+E Q   L
Sbjct: 76  RFMQSKATSS-NRRLVVLRRFYRWALREHLRTDDPTLQLDTARQPPRRPKTLSEAQVEAL 134

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +             +  R+ A+L LLY  GLR+SE ++L    +  DQ  ++I GKG K 
Sbjct: 135 L-----AAPEVDTPLGLRDRAMLELLYASGLRVSELVALPVVRVSLDQGVVQIAGKGGKE 189

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKP-------LNPGVFQRYIRQ 249
           R+VP   + +  +  Y      +L      P LF   R          +   +F   I+ 
Sbjct: 190 RLVPFGSAAQDWLQNYLRTARHELLQGRDSPFLFVTARSGQSARETTGMTRQMFWMRIKA 249

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             R  G+ +  + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT++  +     
Sbjct: 250 YARKAGIDVPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHIARER---- 305

Query: 310 MMEIYDQTHPSI 321
           +  ++ + HP  
Sbjct: 306 LKTLHARHHPRA 317


>gi|251791941|ref|YP_003006661.1| site-specific tyrosine recombinase XerD [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533328|gb|ACS96574.1| tyrosine recombinase XerD [Aggregatibacter aphrophilus NJ8700]
          Length = 297

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 93/302 (30%), Positives = 150/302 (49%), Gaps = 17/302 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++    IE+GLS  T+QSY  D      +L  +    +T      L   +++ F+ +R  
Sbjct: 10  FINEYWIEKGLSPNTVQSYRLDLTALCDWLEVHKLSLLT------LDAVDLQTFLGERLQ 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     S  R LS ++   +YL K K  T+     + + K  + LP+ L E+Q   L++ 
Sbjct: 64  QGYKATSTARLLSAMRKLFQYLYKEKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDLLNV 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L        ++ R+ A+L LLY  GLR++E ++L   +I  +Q  +R+ GKG+K RIV
Sbjct: 124 QSLEQP-----VELRDKAMLELLYATGLRVTELVTLGTDSINLNQGVVRVIGKGNKERIV 178

Query: 201 PLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+       I +Y   + P  L+      LF   RG  +    F   I+       +   
Sbjct: 179 PMGEEATHWIKQYILFVRPILLDGQSSDVLFPSRRGTQMTRQTFWHRIKHYAVRAEIDSD 238

Query: 260 -TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++++ H
Sbjct: 239 MLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER----LKRLHERYH 294

Query: 319 PS 320
           P 
Sbjct: 295 PR 296


>gi|256424447|ref|YP_003125100.1| tyrosine recombinase XerD [Chitinophaga pinensis DSM 2588]
 gi|256039355|gb|ACU62899.1| tyrosine recombinase XerD [Chitinophaga pinensis DSM 2588]
          Length = 316

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 86/306 (28%), Positives = 147/306 (48%), Gaps = 15/306 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   L++ER LS  ++++Y  D  + + +L     +        Q+S +++++ +  
Sbjct: 24  LKGFRSYLQLERSLSANSIEAYLRDVEKLVQYLQSVNIQP----PPDQVSLSDLQSCVRW 79

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             T  +   S  R +SGIK+F +YL    +  +   + +   K    LP  L+ ++   +
Sbjct: 80  IATLGMTATSQARIISGIKAFYRYLALEDVVRQDPTILLEAPKTKRQLPDVLSFEEIEQI 139

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +  +   T         RN AIL  +Y CGLR+SE  +L    +  D   +R+ GKGDK 
Sbjct: 140 IGQIKAGTPE-----GQRNRAILETMYSCGLRVSEVTNLQISQLHFDAGFIRVVGKGDKE 194

Query: 198 RIVPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R+VP+     K I  Y D       +    +  LF   RG  L   +    I++L    G
Sbjct: 195 RLVPIGSDAVKYINIYKDEVRVHVPVKKGQEDILFLNRRGSALTRVMIFLVIKELTAAAG 254

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + HT RHSFATHL+  G DLR++Q +LGH  ++TT+IYT+++ +   D +     
Sbjct: 255 IDKQVSPHTFRHSFATHLVEGGADLRAVQEMLGHESITTTEIYTHLDREYLRDTLQ---- 310

Query: 316 QTHPSI 321
           + HP  
Sbjct: 311 RFHPRF 316


>gi|167041136|gb|ABZ05896.1| putative Phage integrase family protein [uncultured marine
           microorganism HF4000_001A02]
          Length = 298

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 86/306 (28%), Positives = 158/306 (51%), Gaps = 15/306 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q+++  L++ER L++ +L+SYE D +Q+  +L      ++ ++TIR ++   IR+F+ K
Sbjct: 5   LQDYMTMLKVERNLARNSLESYERDLQQYHQYLKT----ELKLKTIRNVTLGHIRSFVRK 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + +   S+KR++S I+++  +L       ++    +   K    LP  L  ++   +
Sbjct: 61  LSNRGLAANSIKRAVSSIRTYHNFLSAEGHMKDNPAQLLDTPKIPRKLPNVLTIQEIDKI 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +  +      E   +  R+ AI  ++Y CGLR++E       +I+ D   +R+QGKG K 
Sbjct: 121 LGII-----PENAPMAQRDLAIFEMMYSCGLRVTELCDFKTSDILWDSEMIRVQGKGSKQ 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R VP+ P  R+ +  Y +     L         +F    G+ L   +    +++      
Sbjct: 176 RFVPIGPIARENLKNYLNHERNTLADKNPNVAEVFLSRNGRKLTRMMIWVLLKKWTESAE 235

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + HTLRHSFATHLL  G DLRS+Q +LGH  ++TTQ+YT+++ ++    + E++ 
Sbjct: 236 VKKEVSPHTLRHSFATHLLEGGADLRSVQEMLGHTDITTTQVYTHLDKEH----LKEVHR 291

Query: 316 QTHPSI 321
             HP  
Sbjct: 292 TYHPRF 297


>gi|90413180|ref|ZP_01221176.1| tyrosine recombinase [Photobacterium profundum 3TCK]
 gi|90325871|gb|EAS42323.1| tyrosine recombinase [Photobacterium profundum 3TCK]
          Length = 298

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 94/306 (30%), Positives = 149/306 (48%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + +ERGLS+ TL SY  D  +   +        +T      LS  +++ +   
Sbjct: 8   IERFLDAMWMERGLSENTLMSYRNDLTKLRKWSEDKNYRLVT------LSSDDLQRYQQW 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    S  R +S I+   +YL + K+  +     M + +    LP+ L E+Q   L
Sbjct: 62  LFDADFKQTSRARMVSAIRRLFQYLYREKMRDDDPSSMMVSPRLPKRLPKDLTEEQVGAL 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D            I+ R+ A+L LLY  GLR++E +SLT +N+   Q  +R+ GKGDK 
Sbjct: 122 LD-----APDTNNPIELRDKAMLELLYATGLRVTELVSLTMENVSLRQGVVRVMGKGDKE 176

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  S    I E+ D   P  L       LF   R + +    F   I+      G+
Sbjct: 177 RLVPMGESAIDWIEEFIDSGRPQLLGEKSSDVLFPSKRARQMTRQTFWHRIKHYAVIAGI 236

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
              + + H +RH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 237 DTDTLSPHVMRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHA 292

Query: 316 QTHPSI 321
             HP +
Sbjct: 293 THHPRV 298


>gi|110597063|ref|ZP_01385352.1| Phage integrase:Phage integrase, N-terminal SAM-like [Chlorobium
           ferrooxidans DSM 13031]
 gi|110341254|gb|EAT59719.1| Phage integrase:Phage integrase, N-terminal SAM-like [Chlorobium
           ferrooxidans DSM 13031]
          Length = 336

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 98/330 (29%), Positives = 163/330 (49%), Gaps = 21/330 (6%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQTIRQLS 67
           I + E  K   ++L  L   + LS  TL++Y  D  Q+  FL  +   + +    + Q+ 
Sbjct: 11  IPAAEEYKPLGDFLSALRSRKNLSPNTLKAYRGDLIQYFSFLLHHFRLDDLNGFALEQVK 70

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
             ++R F+     + +  RS+ R L+ +KSF +Y ++    T S    +   +    +P 
Sbjct: 71  AVDVRLFMGALIERGVKPRSIARKLASVKSFYRYQQETGKITGSLFSFIATPRYPKRVPA 130

Query: 128 ALNEKQALTLVDNVLLH----------TSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
            L E+Q   L +  L            +  E +++  R+ +IL LLY CGLR+SE   LT
Sbjct: 131 FLTEQQTEKLFNEELSSGRAPFRQSEKSPIEEEFVSERDRSILELLYSCGLRVSELTGLT 190

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL------PLFR 231
              +  D   +++ GKG K RIVP+  +  +A+ +Y+++      ++++        +F 
Sbjct: 191 TDRLDLDGGYVKLTGKGRKQRIVPVGGAALQALKKYFEVRRNFFRISLKGRAESINYVFV 250

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
             +GK L P + QR  R+    +        H LRHSFATHLL++G DL S+  +LGH  
Sbjct: 251 TKKGKQLYPMLVQRLTRKYLVSVTEQKQKNPHILRHSFATHLLNSGADLTSVSEMLGHSN 310

Query: 292 LSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           LSTT+IYT+V      D + E+Y + HP  
Sbjct: 311 LSTTEIYTHVTF----DRLKEVYRKAHPRA 336


>gi|28867454|ref|NP_790073.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213970725|ref|ZP_03398850.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato T1]
 gi|81732947|sp|Q88B11|XERC_PSESM RecName: Full=Tyrosine recombinase xerC
 gi|28850688|gb|AAO53768.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213924559|gb|EEB58129.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato T1]
          Length = 299

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 89/311 (28%), Positives = 149/311 (47%), Gaps = 17/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +    +  +L  ER +S  TL++Y  D  + L +      +K  + +   L    +R+
Sbjct: 1   MEQHLDAYCMHLRSERQVSPHTLEAYRRDLSKVLAYC-----QKARLSSWNDLDIQHLRS 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F +++  Q    RSL R LS ++ F KYL +  +        +   K    LP+ L+  +
Sbjct: 56  FTARQHQQGQSSRSLARMLSAVRGFYKYLNREGLCQHDPANGLSPPKGERRLPKTLDTDR 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D  +     E  ++  R+ AI+ LLY  GLR+SE   L    +      +++ GK
Sbjct: 116 TAQLLDGGV-----EDDFLAHRDQAIMELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R++P+    R+A+  +  L    L       +F   +GK L P   Q  I+     
Sbjct: 171 GSKTRVLPVGSKARQALETWLPLR--ALTNPQDDAVFVSQQGKRLGPRAVQLRIKTAGER 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L  +   H LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +
Sbjct: 229 -ELGQNLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATV 283

Query: 314 YDQTHPSITQK 324
           YD  HP   +K
Sbjct: 284 YDSAHPRAKRK 294


>gi|292486680|ref|YP_003529550.1| tyrosine recombinase xerC [Erwinia amylovora CFBP1430]
 gi|292897917|ref|YP_003537286.1| tyrosine recombinase [Erwinia amylovora ATCC 49946]
 gi|291197765|emb|CBJ44860.1| tyrosine recombinase [Erwinia amylovora ATCC 49946]
 gi|291552097|emb|CBA19134.1| Tyrosine recombinase xerC [Erwinia amylovora CFBP1430]
          Length = 302

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 78/310 (25%), Positives = 148/310 (47%), Gaps = 17/310 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL   + +L+ L++ER LS LT  +Y       ++ L     +++ +    +L  + +R+
Sbjct: 7   LLTATEGFLRYLKVERQLSPLTQVNYRRQLSAIIVLL-----DELKVVEWARLDASLVRS 61

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             ++     +   SL   LS ++SFL +L  +     +    +   + +  LP+ ++  +
Sbjct: 62  LAARSTRSGLKPASLALRLSALRSFLDWLVSQGAIKANPAKGVATPRAARHLPKNIDVDE 121

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++  L         +  R+ A+L  +YG GLR+SE + +   ++      + + GK
Sbjct: 122 VNRLLEIDL------NDPLAVRDRAMLEAMYGAGLRLSELVGIDLGHLDLASGEVWVIGK 175

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R +P+  +    +  +      +L       LF   +GK ++    Q+   +    
Sbjct: 176 GSKERRLPMGRTAVHWVENWL--AMRELFEPQDNALFLSNQGKRISTRNVQKRFAEWGVK 233

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+      H LRHSFATH+L + GDLR++Q +LGH  L+TTQIYT+++ ++    +  +
Sbjct: 234 QGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----LASV 289

Query: 314 YDQTHPSITQ 323
           YD  HP   +
Sbjct: 290 YDAAHPRAKR 299


>gi|328955348|ref|YP_004372681.1| integrase family protein [Coriobacterium glomerans PW2]
 gi|328455672|gb|AEB06866.1| integrase family protein [Coriobacterium glomerans PW2]
          Length = 314

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 91/319 (28%), Positives = 153/319 (47%), Gaps = 20/319 (6%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
               ++ +   ++L  L +ERGLS+ T+  Y  D   ++ FL         I  +  +  
Sbjct: 10  PADTQIARAADSYLSYLSVERGLSENTIAGYRRDLSSYIAFLL-----DEGIDRLDGIDR 64

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++ AF+  +R       S++R+LS +K F ++  +  +T      ++R  ++ + LP  
Sbjct: 65  ADVEAFVCAKRDGGYSSASIERALSAVKGFHRFAIREGLTETHPTASLRLPRREDRLPAV 124

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++ +QA  L+D     T+       AR+ A L +LYGCGLR+SE + L  +++  D+  L
Sbjct: 125 ISIEQARALLDQPFAPTAA-----GARDRATLEVLYGCGLRVSELIGLDVRDLHLDEEFL 179

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-----IQLPLFRGIRGKPLNPGVF 243
              GKG K R+VP+  +   A+  Y      +L  +         +     G  L+    
Sbjct: 180 HALGKGSKERLVPITGTAAAAMEAYMSGPRSELAAHARRASPSPAVLLNKNGGRLSRQAV 239

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
                +  R  G+      HTLRHSFATH+L+ G DLR +Q ILGH  ++TTQ+YT+++ 
Sbjct: 240 HACCERWGRIAGID-GLHPHTLRHSFATHMLAGGADLRVLQEILGHASITTTQLYTHLD- 297

Query: 304 KNGGDWMMEIYDQTHPSIT 322
                 + EIY   HP   
Sbjct: 298 ---RAQITEIYLGAHPRAR 313


>gi|163857876|ref|YP_001632174.1| site-specific tyrosine recombinase XerD [Bordetella petrii DSM
           12804]
 gi|163261604|emb|CAP43906.1| integrase/recombinase [Bordetella petrii]
          Length = 310

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 87/320 (27%), Positives = 145/320 (45%), Gaps = 14/320 (4%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK--ITIQTI 63
           +P         +   ++  + +E GL+  TL +Y  D   F  +L    E     T   +
Sbjct: 1   MPSADPLASQADIDAFIDAVWLEDGLAANTLAAYRRDLSAFARWLETPAEHGGAATASLL 60

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           R     +I A+ + R        +  R L+ ++ F  +  +   T     L +   K+  
Sbjct: 61  RDAGTGDIEAWFAARHADSRA-TTANRRLAALRRFYAWALREHRTGHDPCLTLSAAKQPP 119

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            +P+ L+E Q   L+    L+T+        R+ A+L  LY  GLR+SE +++    +  
Sbjct: 120 RMPKTLSEAQVDALLRAPDLNTAR-----GLRDRAMLETLYATGLRVSELVNIKVLEVSL 174

Query: 184 DQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPG 241
           ++  +R+  GKG K R+VPL       I  Y      DL    +   LF   R +P+   
Sbjct: 175 NEGVVRVVMGKGGKDRLVPLGAEAAHWIDRYLKEARPDLAGARVSDALFLTARAQPMTRQ 234

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            F + I++     G+    + H LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 235 AFWQLIKKYAVVSGVRAPLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHV 294

Query: 302 NSKNGGDWMMEIYDQTHPSI 321
             +     +  ++   HP  
Sbjct: 295 ARER----LKALHAAHHPRA 310


>gi|50843000|ref|YP_056227.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           KPA171202]
 gi|50840602|gb|AAT83269.1| integrase/recombinase [Propionibacterium acnes KPA171202]
 gi|313763561|gb|EFS34925.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL013PA1]
 gi|313793954|gb|EFS41978.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL110PA1]
 gi|313801341|gb|EFS42592.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL110PA2]
 gi|313816741|gb|EFS54455.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL059PA1]
 gi|313829428|gb|EFS67142.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL063PA2]
 gi|313839938|gb|EFS77652.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL086PA1]
 gi|314914715|gb|EFS78546.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL005PA4]
 gi|314919323|gb|EFS83154.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL050PA1]
 gi|314920767|gb|EFS84598.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL050PA3]
 gi|314930647|gb|EFS94478.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL067PA1]
 gi|314954397|gb|EFS98803.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL027PA1]
 gi|314957518|gb|EFT01621.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL002PA1]
 gi|314963694|gb|EFT07794.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL082PA1]
 gi|314968478|gb|EFT12576.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL037PA1]
 gi|315079544|gb|EFT51537.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL053PA2]
 gi|315099188|gb|EFT71164.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL059PA2]
 gi|315100329|gb|EFT72305.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL046PA1]
 gi|315106859|gb|EFT78835.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL030PA1]
 gi|315108987|gb|EFT80963.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL030PA2]
 gi|327452023|gb|EGE98677.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL092PA1]
 gi|327454940|gb|EGF01595.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL087PA3]
 gi|327457774|gb|EGF04429.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL083PA2]
 gi|328755227|gb|EGF68843.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL087PA1]
 gi|328758294|gb|EGF71910.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL025PA2]
          Length = 315

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 83/312 (26%), Positives = 147/312 (47%), Gaps = 10/312 (3%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +   L    +++  +L   R  S  T++ Y  D    +     + ++     T+ ++  +
Sbjct: 14  LPMSLTVPVEDFCGHLSALRR-SPNTIRGYRADLIDLMGHAHSHGDD-----TLGRIGTS 67

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++RA+++  R       +++R  S  + F ++     + +      + + K    LP  L
Sbjct: 68  QVRAWLADTRVAGASAATMQRRWSAARVFFRWAANEGLISADPTTALNSAKVPKRLPATL 127

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              QA  ++D  +    H+     AR++AIL +LYG GLR+ E   L   ++   + T++
Sbjct: 128 GVDQARHILDEAVAQARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVK 187

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKGDK R VP+     +AI  +       +  +    LF G RG+ ++  V +R +  
Sbjct: 188 VTGKGDKERTVPMGAPALRAIDTWLPRREEWVGPHSGQALFLGARGRRIDQRVVRRVVHT 247

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             R          H LRH+ ATHLL  G DLR++Q ILGH  L+TTQIYT+V+++     
Sbjct: 248 DLRAEPDSPDLGPHGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTER---- 303

Query: 310 MMEIYDQTHPSI 321
           +   + Q HP  
Sbjct: 304 LRTAFRQAHPRA 315


>gi|227824418|ref|ZP_03989250.1| recombinase [Acidaminococcus sp. D21]
 gi|226904917|gb|EEH90835.1| recombinase [Acidaminococcus sp. D21]
          Length = 298

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 86/311 (27%), Positives = 148/311 (47%), Gaps = 20/311 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ++  E   ++  L +E GL++ T +SY  D R F +++          + I+++S  +I 
Sbjct: 6   KIEDEIALFMDYLTVEMGLARNTRESYGRDLRLFAVWVK---------KPIKEISRDDIL 56

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            ++S  + Q     S  R L+ +K+F +++             + +  +   LP+ L+  
Sbjct: 57  TYMSVLKAQNYAVTSSARKLAALKAFFRFMTAEGTIEVDPCEVVESETRGMVLPKVLSVD 116

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L +   L T         R+  +L ++Y  G+R+SE L+L   ++      +   G
Sbjct: 117 EVNRLFEAPDLDTPE-----GYRDRTMLEVMYATGMRVSELLALKVGSVNLASHYVIAYG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           KG K R++PL     + + EY       F         LF  IRG  +    F + I+  
Sbjct: 172 KGAKERLIPLGHYAIEYLKEYLSRVRPHFVKENRPCDDLFLTIRGTGMTRQRFWQLIKNY 231

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              + +  S T H LRHSFATH+L NG DLR++Q +LGH  +STTQIYT++ +      +
Sbjct: 232 GLKVHIAKSLTPHILRHSFATHMLDNGADLRTVQELLGHSDISTTQIYTHLTN----HRL 287

Query: 311 MEIYDQTHPSI 321
             IYD++HP  
Sbjct: 288 KAIYDKSHPRA 298


>gi|254246904|ref|ZP_04940225.1| Phage integrase [Burkholderia cenocepacia PC184]
 gi|124871680|gb|EAY63396.1| Phage integrase [Burkholderia cenocepacia PC184]
          Length = 355

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 87/321 (27%), Positives = 160/321 (49%), Gaps = 29/321 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                +L NL+  R LS+ TL++Y  +  +     A         + +  L+  ++R  +
Sbjct: 53  DPIAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAG--------RPLDALTAADMRGAV 104

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            +     +  RS+   LS  ++F ++  +R     + +  +R  K+  SLP+AL+   A+
Sbjct: 105 VRGHAAGLSARSISHRLSAWRAFYRWFAQRVEMPANPVAGVRAPKREKSLPKALSVDDAV 164

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-----------MDD 184
            L+D  L  T+   +     + AIL L Y  GLR++E + L  +                
Sbjct: 165 ALMDAPLAGTTESIR-----DHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLA 219

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           ++ + ++GKG+K R VP+      A+  +  +    +  +   PLF  +RG  ++PGV +
Sbjct: 220 EAEVTVRGKGNKERKVPVGSKAIDALNAWLAVRGEFVKHDPH-PLFVSVRGNRMSPGVVR 278

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  ++ TQIYT+++ +
Sbjct: 279 ERVKRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQ 338

Query: 305 NGGDWMMEIYDQTHPSITQKD 325
           +    + +IYD  HP   ++D
Sbjct: 339 H----LAKIYDSAHPRAKKRD 355


>gi|154494032|ref|ZP_02033352.1| hypothetical protein PARMER_03377 [Parabacteroides merdae ATCC
           43184]
 gi|154086292|gb|EDN85337.1| hypothetical protein PARMER_03377 [Parabacteroides merdae ATCC
           43184]
          Length = 301

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 87/309 (28%), Positives = 152/309 (49%), Gaps = 16/309 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   L +E+ LS  ++ +Y  D  +   F+    ++         ++Y +++ F+++
Sbjct: 8   IERYKTYLRLEKALSANSIDAYLTDLDKLTNFVESEGKK------YADVTYDDLQQFVAR 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I  RS  R +SGIKSF ++L      T      + + K    LP  L   +  ++
Sbjct: 62  LHDIGIHPRSQARIISGIKSFYRFLFLDDYITTDPTELLESPKIGLKLPEVLTVNEINSI 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D + L           RN A+L +LY CGLR+SE +SL   ++  D+  ++++GKG K 
Sbjct: 122 LDTIDLTLPE-----GQRNRAMLEVLYSCGLRVSELVSLRFTDVYFDEGFIKVEGKGSKQ 176

Query: 198 RIVPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +  K I  Y        +    +  LF   RG  L+  +    I+Q     G+
Sbjct: 177 RLVPISETAIKEIKNYLYDRNHVAVKKGFEDILFLSRRGTALSRIMVFHIIKQQTEMAGI 236

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HT RHSFATHLL  G +L +IQ +LGH +++TT+IYT+++ +     ++E    
Sbjct: 237 KKNVSPHTFRHSFATHLLEGGANLLAIQEMLGHEKITTTEIYTHIDRQFLRKEILE---- 292

Query: 317 THPSITQKD 325
            HP    +D
Sbjct: 293 HHPRSKPRD 301


>gi|332653317|ref|ZP_08419062.1| tyrosine recombinase XerD [Ruminococcaceae bacterium D16]
 gi|332518463|gb|EGJ48066.1| tyrosine recombinase XerD [Ruminococcaceae bacterium D16]
          Length = 295

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 86/314 (27%), Positives = 149/314 (47%), Gaps = 20/314 (6%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++  ELL   +   + L  E+  S  T+ SY  D  QF   +A    E      + +L+ 
Sbjct: 1   MLVSELLHLFE---EYLTTEKKASANTVSSYLRDMHQFETAMAEQDLE------LTELAV 51

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++  ++     +     ++ RS++ IKSF   +    I   +   ++   K    LP+ 
Sbjct: 52  QDVELYVDGLTRKGKSAATVTRSIASIKSFYNCMIALGIMDRNPAKDVVAAKVERKLPQI 111

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L  K+    ++         +     R+ A+L LLY  G+R+SE ++L   ++      L
Sbjct: 112 LTGKEVELFLEQ-----PDCSDLKGFRDRAMLELLYATGIRVSELIALDVDDLNLPAGVL 166

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
             + KG   RI+PL  +  +A+ +Y   + P  +    +  LF  + G+ ++   F + I
Sbjct: 167 HCESKGR-ERIIPLYHTAIRALSDYITQVRPQLVESPEETALFVNMSGERMSRQGFWKLI 225

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +  +   G+    T HTLRHSFA HLL NG DLRSIQ +LGH  +S+TQIY+ + S+   
Sbjct: 226 KHYQEKAGIQKDITPHTLRHSFAAHLLENGADLRSIQEMLGHADISSTQIYSRLVSQ--- 282

Query: 308 DWMMEIYDQTHPSI 321
             + ++Y + HP  
Sbjct: 283 -KLKDVYHKAHPRA 295


>gi|312170746|emb|CBX79008.1| Tyrosine recombinase xerC [Erwinia amylovora ATCC BAA-2158]
          Length = 302

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 78/310 (25%), Positives = 147/310 (47%), Gaps = 17/310 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL   + +L+ L++ER LS LT  +Y       ++ L     +++ +    +L    +R+
Sbjct: 7   LLTATEGFLRYLKVERQLSPLTQVNYRRQLSAIIVLL-----DELKVVEWARLDAALVRS 61

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             ++     +   SL   LS ++SFL +L  +     +    +   + +  LP+ ++  +
Sbjct: 62  LAARSTRSGLKPASLALRLSALRSFLDWLVSQGAIKANPAKGVATPRAARHLPKNIDVDE 121

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++  L         +  R+ A+L  +YG GLR+SE + +   ++      + + GK
Sbjct: 122 VNRLLEIDL------NDPLAVRDRAMLEAMYGAGLRLSELVGIDLGHLDLASGEVWVIGK 175

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R +P+  +    +  +      +L       LF   +GK ++    Q+   +    
Sbjct: 176 GSKERRLPMGRTAVHWVENWL--AMRELFEPQDNALFLSNQGKRISTRNVQKRFAEWGVK 233

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+      H LRHSFATH+L + GDLR++Q +LGH  L+TTQIYT+++ ++    +  +
Sbjct: 234 QGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----LASV 289

Query: 314 YDQTHPSITQ 323
           YD  HP   +
Sbjct: 290 YDAAHPRAKR 299


>gi|330878502|gb|EGH12651.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 290

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 90/301 (29%), Positives = 146/301 (48%), Gaps = 17/301 (5%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           +L  ER +S  TL++Y  D  + L F      +K  + +   L    +R+F +++  Q  
Sbjct: 2   HLRSERQVSPHTLEAYRRDLSKVLTFC-----QKAQLSSWNDLDIQHLRSFTARQHQQGQ 56

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
             RSL R LS ++ F KYL +  +        +   K    LP+ L+  +   L+D  + 
Sbjct: 57  SSRSLARMLSAVRGFYKYLNREGLCQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGV- 115

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
               E  ++  R+ AI+ LLY  GLR+SE   L    +      +++ GKG K R++P+ 
Sbjct: 116 ----EDDFLAHRDQAIMELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVG 171

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              R+A+  +  L    L       +F   +GK L P   Q  I+       L  +   H
Sbjct: 172 SKARQALETWLPLR--ALTNPQDDAVFVSQQGKRLGPRAVQLRIKTAGER-ELGQNLHPH 228

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +YD  HP   +
Sbjct: 229 MLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAHPRAKR 284

Query: 324 K 324
           K
Sbjct: 285 K 285


>gi|319944411|ref|ZP_08018685.1| tyrosine recombinase XerD [Lautropia mirabilis ATCC 51599]
 gi|319742372|gb|EFV94785.1| tyrosine recombinase XerD [Lautropia mirabilis ATCC 51599]
          Length = 342

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 94/306 (30%), Positives = 145/306 (47%), Gaps = 15/306 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            + Q++   L +E GLSK TLQ+Y  D  Q   +LA  T        + + S  ++ A++
Sbjct: 50  ADIQSFSDALWLEDGLSKNTLQAYRRDLVQLARWLAPSTRG----VALAEASEADLLAYL 105

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +          S  R L+ IK F ++L +     +   L +R +++    P  L+E Q  
Sbjct: 106 ADAHGHG-KPSSANRRLTVIKRFYRHLLREGRRQDDPTLRIRAMRQPARFPATLSEAQVE 164

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+             +  R+ A+L +LY  GLR+SE + L    +    S +RI GKG 
Sbjct: 165 ALL-----AAPDVETALGLRDRAMLEVLYATGLRVSELVGLKLSEVSMVDSLVRIVGKGS 219

Query: 196 KIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K R+VPL    R  ++ Y     P  L       +F   R   +   +F   IR+     
Sbjct: 220 KERLVPLGEEARAWLVRYLQEARPRLLGARQAEAVFVTQRATGMTRQMFWVLIRRHALRA 279

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V        +  ++
Sbjct: 280 GIEAQLSPHTLRHAFATHLLNHGADLRVVQVLLGHADISTTQIYTHV----ARARLKALH 335

Query: 315 DQTHPS 320
            Q HP 
Sbjct: 336 AQHHPR 341


>gi|253997885|ref|YP_003049948.1| tyrosine recombinase XerC [Methylovorus sp. SIP3-4]
 gi|253984564|gb|ACT49421.1| tyrosine recombinase XerC [Methylovorus sp. SIP3-4]
          Length = 292

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 156/305 (51%), Gaps = 19/305 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L +L  ER LS LT ++Y+ D R  L        E      ++ ++ T IR  ++   
Sbjct: 7   QYLDHLSHERRLSPLTRENYQRDLRVLL--------ELNGEVPLQNMTGTHIRRHVATLH 58

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +G RS+ R LS  + F ++L +R   + +    +R  K   SLP AL+  QA+ LV 
Sbjct: 59  GRNLGGRSIARMLSAWRGFFEFLIQRHGFSANPCQGIRAPKSPKSLPHALSPDQAVQLV- 117

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                +  +   +  R+ A+L L Y  GLR++E ++L    +   + T+ + GKG+K RI
Sbjct: 118 -----SIDDEDTLAQRDHAMLELFYSSGLRLAELVNLDLDALNLGEGTITVTGKGNKTRI 172

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VP+      A+  +  +    L +     LF    GK L+    Q  ++Q     G+ + 
Sbjct: 173 VPVGQHAMNALQAWLAIRSG-LPIQDTSALFLSRLGKRLSRRAVQYRLQQWAIRQGINIR 231

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRHSFA+H+L + GDLR++Q +LGH  +STTQ+YT+++  +    + ++YD  HP
Sbjct: 232 VHPHMLRHSFASHVLQSSGDLRAVQEMLGHANISTTQVYTHLDFHH----LAKVYDSAHP 287

Query: 320 SITQK 324
              +K
Sbjct: 288 RARKK 292


>gi|325983273|ref|YP_004295675.1| tyrosine recombinase XerD [Nitrosomonas sp. AL212]
 gi|325532792|gb|ADZ27513.1| tyrosine recombinase XerD [Nitrosomonas sp. AL212]
          Length = 303

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 150/304 (49%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +   L +E GLS+ TL SY  D + F  +L            + + + +++  F++ 
Sbjct: 11  LDEFSDALWLEDGLSRNTLDSYRNDLQLFSEWLKRRNPSN---SMLTEATNSDLLEFLAS 67

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R   K+   +  R LS +K F ++L ++        LN+   K    LP +L+EK+   L
Sbjct: 68  RVAAKMKASTTSRELSSLKRFYRFLLRQGKIAIDPSLNIETPKLQRHLPESLSEKEVELL 127

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +           + +  R+ A+L  LY  GLR+SE ++L    +  D   LR+ GKG K 
Sbjct: 128 L-----SAPDLAQPLGLRDRAMLEALYASGLRVSELINLKYSQVSMDMGVLRVMGKGRKE 182

Query: 198 RIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+ P+     + +  Y  +  P  LN  +   +F   RG  +    F   I++  + +G+
Sbjct: 183 RLAPVGEESLQWLNRYTKEARPLLLNGIVTDTIFVTTRGAAMTRQAFWYLIKRYAQLVGI 242

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT++  +     + +++ +
Sbjct: 243 AKQLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHIARER----LKQLHAK 298

Query: 317 THPS 320
            HP 
Sbjct: 299 HHPR 302


>gi|329895691|ref|ZP_08271114.1| site-specific tyrosine recombinase XerC [gamma proteobacterium
           IMCC3088]
 gi|328922209|gb|EGG29563.1| site-specific tyrosine recombinase XerC [gamma proteobacterium
           IMCC3088]
          Length = 306

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 156/308 (50%), Gaps = 15/308 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            ++      + LS  TL+ Y+ D   F+  L     E      I  L    +R++ +  R
Sbjct: 13  QFITYARDVKQLSAHTLKHYQRDIDSFVAQL-----EPSDADNIHSLKEYHVRSWANSLR 67

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +   S+ R LS ++S+ ++  KR   + +    +R  K++  LP+A++  Q    + 
Sbjct: 68  RKGLAPASIARHLSSVRSWFQFCAKRFGLSHNPAAGVRAPKQARKLPKAMDADQINQCL- 126

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                 +     +D R+ A+  LLY CGLR+SE  SLT   I   Q  + + GKG+K R 
Sbjct: 127 -----VAPSESDLDTRDLAMAELLYSCGLRLSELQSLTLAQIDIQQRLVTVTGKGNKTRQ 181

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +P+      A+ ++    P   +L    P+F   +GK L+P   Q  + +L ++  +P+ 
Sbjct: 182 IPIGGVALDALKKWMRQHPLAGDLQASTPVFTTRQGKALSPRSIQTRLDRLAKHNAIPVH 241

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H +RHSFA+HLL + GDLR++Q +LGH  +STTQIYT+++ ++    + + YD  HP
Sbjct: 242 VHPHMMRHSFASHLLESSGDLRAVQELLGHSNISTTQIYTHLDFQH----LAKTYDAAHP 297

Query: 320 SITQKDKK 327
              ++  K
Sbjct: 298 RAKRQKGK 305


>gi|39995600|ref|NP_951551.1| PfpI family intracellular peptidase [Geobacter sulfurreducens PCA]
 gi|39982363|gb|AAR33824.1| site-specific recombinase, phage integrase family [Geobacter
           sulfurreducens PCA]
 gi|298504620|gb|ADI83343.1| site-specific recombinase, XerC [Geobacter sulfurreducens KN400]
          Length = 294

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 98/306 (32%), Positives = 148/306 (48%), Gaps = 16/306 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E   +++ LE ER +S  T  +YE D  QF  F+     E         +S+  +R +++
Sbjct: 4   EVTTFIRYLENERAVSPHTRAAYESDLAQFRDFVR---GELGAGAGAAAISHLLVRRWLA 60

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           +   Q     S+ R L+ +++F  YL +      +    +   K+   +P  LN  +   
Sbjct: 61  QLH-QSHARSSIGRKLAAVRAFFTYLVRTGALPRNPAELVSTPKREKKVPFHLNIDEVTA 119

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           LV+     +  E   +  R+ AIL  LY CG+R+SE   L    I     T+R+ GKG K
Sbjct: 120 LVE-----SPREPGVLSLRDRAILETLYSCGVRVSELTGLNVGGIDLADGTVRVLGKGGK 174

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+VP+    R A+  Y           +++PLF   RG  L     +R + +    +  
Sbjct: 175 ERVVPIGSHARLALSSYLAARNH---PPLEVPLFTNARGGRLTARSVRRVVDKHILKVAA 231

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL  G DLR+IQ +LGH  LSTTQ YT+V    G D +ME+YD+
Sbjct: 232 MRKISPHTLRHTFATHLLEGGADLRAIQELLGHASLSTTQKYTHV----GIDRLMEVYDK 287

Query: 317 THPSIT 322
            HP   
Sbjct: 288 AHPKAR 293


>gi|319954373|ref|YP_004165640.1| tyrosine recombinase xerc [Cellulophaga algicola DSM 14237]
 gi|319423033|gb|ADV50142.1| Tyrosine recombinase xerC [Cellulophaga algicola DSM 14237]
          Length = 298

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 96/306 (31%), Positives = 160/306 (52%), Gaps = 16/306 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
              ++   L+IERGLS+ ++ SY  D ++ L+FL         + +  Q+    ++ FI 
Sbjct: 6   ALNDYQNYLKIERGLSENSISSYSLDIQKLLLFLETNKI----VTSPIQIDKHIVQQFI- 60

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              ++ +  RS  R +SG+KSF  YL       ++ +  + + K    LP  L+E +   
Sbjct: 61  YEISKDVNPRSQARIISGLKSFFNYLVFEDYRIDNPLELIESPKTGRKLPDTLSEDEIND 120

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+  + L T    +     N AIL  LYGCG+R+SE ++L   ++  ++  +++ GKGDK
Sbjct: 121 LIAAINLSTPEGER-----NRAILETLYGCGVRVSELINLKISDLFFEEDFIKVTGKGDK 175

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLN--LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            R VP+    +K I  Y +     LN     +  LF   RG+ L   +    I+QL   +
Sbjct: 176 QRFVPISDINKKYINLYKNEIRVHLNIQKGFEDILFLNRRGRQLTRAMIFTIIKQLAIKI 235

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            L  + + HT RHSFATHLL NG DLR+IQ +LGH  ++TT++Y +V+  +    + ++ 
Sbjct: 236 DLKKTISPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEVYMHVDRSH----LAQVL 291

Query: 315 DQTHPS 320
           ++ HP 
Sbjct: 292 NEFHPR 297


>gi|206890528|ref|YP_002247908.1| tyrosine recombinase XerD [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742466|gb|ACI21523.1| tyrosine recombinase XerD [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 294

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 98/311 (31%), Positives = 155/311 (49%), Gaps = 19/311 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E  +  + +L  L  E+ LS  T++SYE D + FL +L   TE+ I +   ++    +I 
Sbjct: 2   EQKEILKKFLNYLLTEKALSINTVKSYENDLKNFLKWL---TEQNILVLNCKK---DDIV 55

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            ++   + +     S+ R LS +K F +++    I        +++ K    LP+AL   
Sbjct: 56  QYLLNLKEKAYSSTSIARILSSLKQFFRFMIFDSIINHDPTEGLKSPKLWLRLPKALEID 115

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L+  +L            R+ A+L L+Y  GLR+SE + L   +I  +   +R++G
Sbjct: 116 EVKRLLSVMLESK------YYLRDIAMLELMYASGLRVSELVRLKLSDINFEAGFIRVKG 169

Query: 193 KGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KGDK R+VP+       I  Y   L P  L       +F   RG+P+    F + I+ + 
Sbjct: 170 KGDKERVVPIAQRSIDKIKNYLVKLRPVLLKKKASEYVFLNNRGQPMTRQRFWQNIKAIG 229

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R  G+  + T H +RHSFATHLL  G DLRS+Q +LGH  +STTQIYT V+     D + 
Sbjct: 230 RIAGV--NVTPHMIRHSFATHLLEGGADLRSLQKMLGHSDISTTQIYTKVS----MDRLR 283

Query: 312 EIYDQTHPSIT 322
           + Y + HP   
Sbjct: 284 KEYLKHHPRAK 294


>gi|169629452|ref|YP_001703101.1| site-specific tyrosine recombinase XerD [Mycobacterium abscessus
           ATCC 19977]
 gi|169241419|emb|CAM62447.1| Tyrosine recombinase XerD [Mycobacterium abscessus]
          Length = 315

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 89/319 (27%), Positives = 147/319 (46%), Gaps = 21/319 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L  E Q++L +L++ERG++  TL SY  D R++   LA        I  + ++  T++  
Sbjct: 8   LDGEIQSYLDHLDVERGVAANTLSSYRRDLRRYQQHLADRK-----IDRLAEVCETDVSD 62

Query: 74  FISKRRTQ-------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           F+   R         ++   S  R+L  ++   ++     +        ++    +  LP
Sbjct: 63  FVVTLRRGDPANGVPELSASSAARALIAVRGLHRFAAIEGLAPTDVARAVKPPTPNRRLP 122

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           ++L  +Q   L++      S     +D RN A+L LLY  G RISEA+ L   ++     
Sbjct: 123 KSLTVEQVEALLNAAGGGGSDG--PLDLRNRALLELLYSTGARISEAVGLDVDDVDVQAR 180

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVF 243
           ++ + GKG K R+VP+     +A+  Y      DL    +     LF   RG  L+    
Sbjct: 181 SVLLWGKGGKQRLVPVGRPAVEALQAYLVRGRPDLARRGRGGVPALFLNSRGGRLSRQSA 240

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            + +        +  + + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V  
Sbjct: 241 WQVLADAAERAKISAAVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVT- 299

Query: 304 KNGGDWMMEIYDQTHPSIT 322
                 + E++   HP   
Sbjct: 300 ---VSALREVWAGAHPRAR 315


>gi|254362734|ref|ZP_04978818.1| site-specific recombinase XerC [Mannheimia haemolytica PHL213]
 gi|261491877|ref|ZP_05988456.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261494653|ref|ZP_05991133.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|153094359|gb|EDN75214.1| site-specific recombinase XerC [Mannheimia haemolytica PHL213]
 gi|261309618|gb|EEY10841.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261312532|gb|EEY13656.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 303

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 86/318 (27%), Positives = 152/318 (47%), Gaps = 17/318 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            S  L ++ + +   L IE+ +S  TL +Y+          +     +  I+   ++  +
Sbjct: 3   TSNPLFQQTRPYWDFLRIEKQVSPHTLSNYQRQLMAVSELFS-----QAGIENWEEVESS 57

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R  +S+   Q +  +S+   L  ++ +  YL K    + +  L +++ K    LP+ +
Sbjct: 58  SVRWMLSQSHKQGLSAKSIGLRLVALRQWFVYLIKIGRMSANPTLGVKSPKVGKHLPKNI 117

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           + +Q   L+           +  D R+ A++ L+Y  GLR+SE   L   ++      +R
Sbjct: 118 DAEQVGQLL------AIESDEPSDIRDIAMMELMYSSGLRLSELQGLDLGDMDLSAREVR 171

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           +QGKG K RIVP+     KA+  + ++            +F   RG  L+    Q  +++
Sbjct: 172 VQGKGSKERIVPIGSQALKALNRWLEMR--LQFKPQDNAVFLNKRGGRLSHRSIQLAMKK 229

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                GL      H LRHSFATH+L   GDLR++Q +LGH  LSTTQIYT+++ ++    
Sbjct: 230 WGERQGLESHLHPHKLRHSFATHMLEASGDLRAVQELLGHSSLSTTQIYTHLDFQH---- 285

Query: 310 MMEIYDQTHPSITQKDKK 327
           + +IYD  HP   +K + 
Sbjct: 286 LAKIYDSAHPRARRKQED 303


>gi|289672837|ref|ZP_06493727.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           syringae FF5]
 gi|330900733|gb|EGH32152.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           japonica str. M301072PT]
 gi|330941149|gb|EGH44028.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           pisi str. 1704B]
 gi|330976605|gb|EGH76649.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 299

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 90/311 (28%), Positives = 149/311 (47%), Gaps = 17/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +    +  +L  ER +S  TL++Y  D  + L +      +K  + +   L    +R+
Sbjct: 1   MDQHLDAYCMHLRSERQVSPHTLEAYRRDLGKVLAYC-----QKAQLSSWSDLDIQHLRS 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F +++  Q    RSL R LS ++ F KYL +  I        +   K    LP+ L+  +
Sbjct: 56  FTARQHQQGQSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDR 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D  +     E  ++  R+ AIL LLY  GLR+SE   L    +      +++ GK
Sbjct: 116 TAQLLDGGV-----EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R++P+    R+A+  +  L    L       +F   +GK L P   Q  ++     
Sbjct: 171 GSKTRVLPVGSKARQALEVWLPLR--ALTHPQDDAVFVSQQGKRLGPRAIQVRLKAAGER 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L  +   H LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +
Sbjct: 229 -ELGQNLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATV 283

Query: 314 YDQTHPSITQK 324
           YD  HP   +K
Sbjct: 284 YDSAHPRAKRK 294


>gi|227889898|ref|ZP_04007703.1| site-specific recombinase XerD [Lactobacillus johnsonii ATCC 33200]
 gi|268319571|ref|YP_003293227.1| tyrosine recombinase XerC [Lactobacillus johnsonii FI9785]
 gi|227849342|gb|EEJ59428.1| site-specific recombinase XerD [Lactobacillus johnsonii ATCC 33200]
 gi|262397946|emb|CAX66960.1| tyrosine recombinase XerC [Lactobacillus johnsonii FI9785]
          Length = 307

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 96/319 (30%), Positives = 147/319 (46%), Gaps = 15/319 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S E  K  + +   L  ER  SK T+ SY  D  +   F      E        Q+   
Sbjct: 1   MSKENDKLIKQFQDYLNYERNYSKNTVNSYLNDLNEAKEFFK----ENGGFSGWDQVKSR 56

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++  F+    TQ     +  R +S ++SF ++L KR++     +  +        LP+  
Sbjct: 57  DVEIFLQNLATQNRSRTTQARKMSSLRSFYRFLVKREVLDNDPMQTISLRLGEKKLPQFF 116

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            EK+   + D++  H     + +  RN A+  L Y  G+R+SE  SL    I  D   + 
Sbjct: 117 YEKEMRQVFDSLAGH-----EKLVVRNRAMFELFYATGMRLSEMASLKLDQIDFDLKIIL 171

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYI 247
           + GKG+K R VP       A+ EY D    DL    +    +F   RG+ L     +  +
Sbjct: 172 VHGKGNKDRYVPFGKDAANALKEYCDESRLDLLGKNEDLGYVFLNNRGQKLTGRGIEYIM 231

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +Q+    G+      H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V  K+  
Sbjct: 232 QQVFIKAGVGGKVHPHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKH-- 289

Query: 308 DWMMEIYDQTHPSITQKDK 326
             +   Y +  P   +KD+
Sbjct: 290 --LQADYQKFFPRKDKKDE 306


>gi|270295321|ref|ZP_06201522.1| tyrosine recombinase XerD [Bacteroides sp. D20]
 gi|270274568|gb|EFA20429.1| tyrosine recombinase XerD [Bacteroides sp. D20]
          Length = 317

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 91/312 (29%), Positives = 152/312 (48%), Gaps = 17/312 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + Q L++E+ LS  T+ +Y+ D ++ L FL            I   +  +++ F S 
Sbjct: 17  IRKYHQYLKLEKALSPNTVDAYQTDLQKLLHFLEGEGI------AILDTTLDDLQHFASG 70

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I  RS  R LSGIKSF  +L             +   K    LP  L  ++   +
Sbjct: 71  LHDIGIHPRSQARILSGIKSFFHFLVIADYLEGDPSELLEGPKIGFKLPEVLTVEEIDRI 130

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +  + L T+        RN AIL  LY CGLR+SE  +L   ++  D+  ++++GKG K 
Sbjct: 131 ISAIDLGTNE-----GQRNRAILETLYSCGLRVSELCNLKISDLYFDEGFIKVEGKGSKQ 185

Query: 198 RIVPLLPSVRKAILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R+VP+     K I  ++      + +  + +  +F    GK ++  +    I++L    G
Sbjct: 186 RLVPISSRAIKEIRNWFVDRNGGWKIKKDFEDYVFLARWGKNISRIMVFHLIKELAEKAG 245

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + + HT RHSFATHLL  G +LR+IQS+LGH  ++TT+IYT+++       ++E   
Sbjct: 246 ITKNISPHTFRHSFATHLLEGGANLRAIQSMLGHESIATTEIYTHIDRHRLRSEIIE--- 302

Query: 316 QTHPSITQKDKK 327
             HP   +  K+
Sbjct: 303 -HHPRNIKYRKE 313


>gi|325268524|ref|ZP_08135154.1| integrase/recombinase XerD [Prevotella multiformis DSM 16608]
 gi|324989052|gb|EGC21005.1| integrase/recombinase XerD [Prevotella multiformis DSM 16608]
          Length = 310

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 87/310 (28%), Positives = 150/310 (48%), Gaps = 16/310 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            + + L++E+G S  T+ +Y  D  + L +LA           +  ++  ++  F +   
Sbjct: 13  RFRRYLKLEKGCSPNTVDAYLHDVDKLLRYLAGEQ------VPVTDVTLEQLEHFAASVS 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              IG RSL R LSG++ F ++L             + + K+ + LP  L+  +   L  
Sbjct: 67  DLGIGARSLARILSGVRQFYRFLVLDGYMEADPTELLESPKQPDHLPEVLSTAEVDLLEQ 126

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            V L     TKW   RN AI+ +L+ CGLR+SE   L   ++  ++  +R+ GKG K R+
Sbjct: 127 AVDL-----TKWEGHRNRAIIEVLFSCGLRVSELTHLKLSDLYREEQYVRVMGKGSKERL 181

Query: 200 VPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+ P     +  ++       +    +  +F   RG  L   +    I++     G+  
Sbjct: 182 VPISPRALDELDCWFADRNVMKIKPGEEDYVFLNRRGHHLTRTMILIMIKRYAAEAGIRK 241

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++      ++E     H
Sbjct: 242 TISPHTLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDTSTLRQEILE----HH 297

Query: 319 PSITQKDKKN 328
           P   +  + +
Sbjct: 298 PRNIKYSEDH 307


>gi|120553434|ref|YP_957785.1| tyrosine recombinase XerC [Marinobacter aquaeolei VT8]
 gi|120323283|gb|ABM17598.1| tyrosine recombinase XerC [Marinobacter aquaeolei VT8]
          Length = 324

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 83/309 (26%), Positives = 153/309 (49%), Gaps = 16/309 (5%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           S   L     ++++L+ E+  S  T + Y+ D ++ + +LA        +    +LS  +
Sbjct: 11  SASQLAALTGFIRHLQSEKRHSPRTCEHYQRDLQRLVAWLADN-----GLNDWSELSAHD 65

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +R ++++     +  RS+ R LS I+ F +YL +  +  ++  L++R  K    LPR  +
Sbjct: 66  VRRYVARLSRDGLSGRSIARHLSSIRRFYQYLLREGLAIDNPALDIRAPKSGRRLPRVAD 125

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             Q   L+D            ++ R+ A+  L+Y  GLR++E        +      +R+
Sbjct: 126 VDQIGQLLDAT------PEDPLEIRDLAMFELMYSSGLRLAELAGADLSALDLKGPEIRV 179

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG+K R++P+      A+ ++   C   L    +  LF   RG  L+    Q  + + 
Sbjct: 180 LGKGNKERVLPVGRKAVAALQQWLS-CRRALVTEGEKALFVSQRGTRLSRRSIQSRLSRW 238

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G       H LRHSFA+H+L + GDLR++Q +LGH  ++TTQ+YT+++ ++    +
Sbjct: 239 GILHGADQRLHPHLLRHSFASHMLESSGDLRAVQELLGHADIATTQVYTHLDFQH----L 294

Query: 311 MEIYDQTHP 319
             +YDQ+HP
Sbjct: 295 ARVYDQSHP 303


>gi|46201486|ref|ZP_00208119.1| COG4974: Site-specific recombinase XerD [Magnetospirillum
           magnetotacticum MS-1]
          Length = 305

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 85/318 (26%), Positives = 146/318 (45%), Gaps = 17/318 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S    +  +++L+ +++ERG S  TL +Y  D   F  FL    +  +  +        
Sbjct: 1   MSIPFDRHIESFLEMMQVERGASPNTLDAYGRDLADFAEFLDGRGQSPLNAEG------R 54

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            + A+I+++    +  R+  R LS +K F  +    ++  +    N+   +    LP+ L
Sbjct: 55  SVAAYIARQAEIGMAARTQARRLSCLKQFYGFAFAERLRPDDPTANIDAPRLGRPLPKYL 114

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            +++   L+D        +        +A++  LY  GLR+SE +SL    +  D + L 
Sbjct: 115 RKEEVTALLDAARALEGRD----GILMTALMETLYATGLRVSELVSLPLSAVARDPNVLV 170

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGI-RGKPLNPGVFQRYI 247
           ++GKG K R+VPL    R A++ +                LF    R   L    F + +
Sbjct: 171 VRGKGSKERMVPLSDPARAALIAWKAERETMVPKSRPSRWLFPSSGRLGHLTRSGFAKML 230

Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
            +     GL P   + H LRHSFA+HLL+ G DLRS+Q +LGH  ++TT+IYT++     
Sbjct: 231 ARAAVLAGLDPFKVSPHVLRHSFASHLLAGGADLRSVQEMLGHADIATTEIYTHL----I 286

Query: 307 GDWMMEIYDQTHPSITQK 324
            D    +    HP   +K
Sbjct: 287 DDEASRLVRAHHPLAAKK 304


>gi|229916183|ref|YP_002884829.1| tyrosine recombinase XerD [Exiguobacterium sp. AT1b]
 gi|229467612|gb|ACQ69384.1| tyrosine recombinase XerD [Exiguobacterium sp. AT1b]
          Length = 295

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 92/308 (29%), Positives = 156/308 (50%), Gaps = 14/308 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +    +++LQ + +E+ +S  T Q+Y  D  Q+   L      ++ ++   +++ + I  
Sbjct: 2   MRSHIESFLQYMTVEKRMSANTRQAYASDLTQYASTLT-----QLGVEEWNEVTRSHIVK 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            I +         SL+R++S I+ F  +LK   +TT    L + + K    LP   ++ +
Sbjct: 57  HIEELSQAGRASSSLRRAVSSIRMFHHHLKMTGVTTTDPSLYLESPKAEKQLPDTWSQTE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D+V       +  +  R+ A+L LLYG G+R+SE L L   ++  +   L+ +GK
Sbjct: 117 VERLLDSV-----PTSDPLSLRDRAMLELLYGTGMRVSELLGLDLDDLQFELGYLQCEGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G++ RI+P+    +  +  Y       L       LF   RG  L+   F + I++  + 
Sbjct: 172 GERARIIPVSSVAQSFVERYIQQARNGLGGRETEALFLNGRGGRLSRQGFWKMIKRRAKL 231

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    T H LRHSFATHLL NG DLR+IQ +LGH  L+TTQ+YT+VN       + ++
Sbjct: 232 AGIEKEITPHVLRHSFATHLLENGADLRAIQQMLGHADLATTQVYTHVNKSR----LHDV 287

Query: 314 YDQTHPSI 321
           Y + HP  
Sbjct: 288 YRKHHPRA 295


>gi|283852933|ref|ZP_06370193.1| tyrosine recombinase XerD [Desulfovibrio sp. FW1012B]
 gi|283571691|gb|EFC19691.1| tyrosine recombinase XerD [Desulfovibrio sp. FW1012B]
          Length = 309

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 86/309 (27%), Positives = 142/309 (45%), Gaps = 16/309 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L++L + +GL++ ++ +Y  D   FLIFL  +         +  ++   +  ++  
Sbjct: 16  VDRYLEHLIVAKGLAEHSIAAYSTDITSFLIFLNSH------AAALETVTDDTLFLYLMH 69

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            RT+ +  RSL R LS ++ F  +    K   ES    + N K    LP  L+ +    L
Sbjct: 70  LRTRGLQSRSLARHLSALRGFFAFAAAEKWLPESPAALIENPKLPRLLPDVLSREDVARL 129

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D            +  R+  +L LLY  GLR+SE + LT  +       LR+ GKG K 
Sbjct: 130 LD-----APDTATPLGYRDRTMLELLYAAGLRVSELVGLTLGDYDAQAGLLRVFGKGAKE 184

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+ P+    R+ +  Y        +   Q  +F    G+ L+     + I+      G+ 
Sbjct: 185 RLTPIHALAREFLSTYILTMRGAFHPREQF-IFLNRSGQGLSRQAVWKKIKAHALAAGVS 243

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H+LRHSFATHLL  G DLR++Q +LGH  +S T+IYT+V        ++ ++   
Sbjct: 244 TRISPHSLRHSFATHLLEGGADLRTVQMLLGHADISATEIYTHV----QAGRLLAVHRAH 299

Query: 318 HPSITQKDK 326
           HP      K
Sbjct: 300 HPRSRAPGK 308


>gi|82703659|ref|YP_413225.1| tyrosine recombinase XerC [Nitrosospira multiformis ATCC 25196]
 gi|82411724|gb|ABB75833.1| tyrosine recombinase XerC subunit [Nitrosospira multiformis ATCC
           25196]
          Length = 318

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 88/322 (27%), Positives = 149/322 (46%), Gaps = 22/322 (6%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
            +PE    EL      +L  L + R LS LT +SY  D    +               + 
Sbjct: 18  KMPEKGQAELASA---YLAYLSVTRRLSPLTCESYGRDLDVLMNLSRGI--------ALE 66

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            L    IR F+++        RSL R LS  +    YL +      +    +R  K   S
Sbjct: 67  HLQIHHIRRFLAQLHANGFSGRSLARMLSAWRGLYNYLARHHGYACNPCAGVRAPKSPRS 126

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LPR L+  +AL L++            +  R+ A+  L Y  GLR++E  +L P+++   
Sbjct: 127 LPRTLSPDEALKLLEF------DTPDLVALRDKAMFELCYSSGLRLAELANLKPEDLSLA 180

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           +  +R+ GKG+K R VP+     + + E+       L    +  LF    G+ ++     
Sbjct: 181 EGIVRVTGKGNKTRDVPVGSKAMQVVREWIKQRAT-LAKPGETGLFLSRHGRNISRRSID 239

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + ++      G+      H LRHSFA+H+L + G+LR++Q +LGH  +STTQ+YT+++ +
Sbjct: 240 QRLKIQAVKQGISGRIHPHVLRHSFASHVLQSSGNLRAVQEMLGHASISTTQVYTHLDFQ 299

Query: 305 NGGDWMMEIYDQTHPSITQKDK 326
           +    + ++YD THP   +K +
Sbjct: 300 H----LSKVYDATHPRARKKKE 317


>gi|328545835|ref|YP_004305944.1| Site-specific recombinase, phage integrase family protein
           [polymorphum gilvum SL003B-26A1]
 gi|326415575|gb|ADZ72638.1| Site-specific recombinase, phage integrase family protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 316

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 140/318 (44%), Positives = 188/318 (59%), Gaps = 9/318 (2%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           ++L    + EL      WL +L  ER LS  TL +YE D RQFL FL  +      +  +
Sbjct: 6   DSLLVTATPELNARIGAWLDHLGDERRLSDKTLVAYERDVRQFLRFLTDHLGGTPGMAEL 65

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           R L   + RAF+++RR      RSL R L+GI+SFL +L++R     +    +R  ++  
Sbjct: 66  RDLRPADFRAFLARRRRAGAQSRSLARGLAGIRSFLGFLERRGEVNAAAAGAIRPPRQPR 125

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ-NIM 182
           SLP+ ++   A  +V   L        WI+ARN+A+L LLYGCGLR++EALSLT +    
Sbjct: 126 SLPKPVSAADARAIVSGEL--AMEAEPWIEARNAAVLTLLYGCGLRLAEALSLTGRTAPR 183

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
               TL I+GKG K RIVP+LP V +A+  Y  LCP+        PLF G RG PLNP +
Sbjct: 184 RGTKTLTIRGKGGKERIVPVLPVVCEAVDAYLKLCPY--TPEPDGPLFLGARGGPLNPRL 241

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            Q  +++LR  L LP S T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQIYT V+
Sbjct: 242 VQLAMQKLRSALALPDSATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQIYTEVD 301

Query: 303 SKNGGDWMMEIYDQTHPS 320
           +      ++E YD+ HP 
Sbjct: 302 TAR----LLEAYDKAHPR 315


>gi|83589876|ref|YP_429885.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC
           39073]
 gi|83572790|gb|ABC19342.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC
           39073]
          Length = 313

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 83/317 (26%), Positives = 142/317 (44%), Gaps = 17/317 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + +L  L+ ER  S  T+ +Y  D  QF  F+A    ++        +    +R ++
Sbjct: 8   EALEGFLLYLKGERQASPCTVDAYRADIEQFAAFVAGRAGQEAGP---AAVDIWMVRRYL 64

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                      S+ R L+ +++F ++L +      S +  +   ++   LP  L+  +  
Sbjct: 65  GWLNQLGQQRSSMNRKLAALRAFYRFLLRAGQVQSSPVALLSGPRREKRLPGCLSHAEME 124

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+      +   T  +  R+ AIL  LY  G+R++E + +   ++       R+ GKG 
Sbjct: 125 KLL------SIPATTPLGLRDRAILETLYASGIRVAELVGMDQDDLDLVAGYARVLGKGR 178

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLR 251
           + R+VPL     KA+  Y      +L      P    LF    G  L     +  +    
Sbjct: 179 RERVVPLGRYAVKALENYLHRARPELAARRIPPEPRALFLNHLGGRLTTRGVRERLSHYV 238

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               L    + HT+RH+FATHLL  G DLR +Q +LGH RL+TTQIYT+++       + 
Sbjct: 239 EKAALRRGVSPHTIRHTFATHLLEGGADLRVVQELLGHIRLATTQIYTHISQSQ----LR 294

Query: 312 EIYDQTHPSITQKDKKN 328
           E+Y Q HP  ++ +  N
Sbjct: 295 EVYRQFHPRASRDNIDN 311


>gi|253566424|ref|ZP_04843877.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|251944596|gb|EES85071.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|301165207|emb|CBW24778.1| putative tyrosine recombinase [Bacteroides fragilis 638R]
          Length = 317

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 98/313 (31%), Positives = 157/313 (50%), Gaps = 18/313 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + Q L++E+ LSK TL++Y  D  + L FL+    E      I ++S T+++ F + 
Sbjct: 17  IKKYQQYLKLEKSLSKNTLEAYLTDLEKLLSFLSAEGVE------ILEVSLTDLQRFAAG 70

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I  RS  R +SGIKSF  +L             +   K    LP  L  ++   +
Sbjct: 71  LHDIGIHARSQARIISGIKSFFHFLIIADYIEADPSELLEGPKIGFKLPEVLTVEEIDRI 130

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +      T   +K    RN AIL  LY CGLR+SE   L   ++  D+  ++++GKG K 
Sbjct: 131 I-----STIDLSKNEGQRNRAILETLYSCGLRVSELTGLKLSDLYFDEGFIKVEGKGSKQ 185

Query: 198 RIVPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+ P   + I  Y+      ++  + +  LF   RG  L+  +    I++L    G+
Sbjct: 186 RLVPISPKAIQEIKLYFLDRNRINIKKDHEDYLFLSRRGTHLSRIMIFHLIKELADMAGI 245

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HT RHSFATHLL  G +LR+IQ +LGH  +STT+IYT+++       ++E    
Sbjct: 246 TQNISPHTFRHSFATHLLEGGANLRAIQCMLGHESISTTEIYTHIDRNMLRSEIIE---- 301

Query: 317 THPSITQ--KDKK 327
            HP   +  ++KK
Sbjct: 302 HHPRNIKYRQEKK 314


>gi|188575133|ref|YP_001912062.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188519585|gb|ACD57530.1| tyrosine recombinase XerC [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 305

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 89/316 (28%), Positives = 150/316 (47%), Gaps = 19/316 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK-----ITIQTIRQLSYT 69
           +     +L  L++ER +S  TL +Y  D    + +      E       T     QL   
Sbjct: 1   MSSVDEFLTYLQVERQVSAHTLDAYRRDLAALVAWTGERNAEDGAQQTATPVDSAQLDSA 60

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R F++    + +  +SL+R LS  +S+  +L K      S    +R  K    LP+ L
Sbjct: 61  HLRQFVAAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIAASPAAALRAPKAQRKLPQVL 120

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  +A+ LV+            +  R+ A+L L Y  GLR+SE  +L  +++  D   + 
Sbjct: 121 DADEAVRLVEVP------TDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVM 174

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG K R+VP+      A+ ++      D   +    +F G  G  ++    Q  I+Q
Sbjct: 175 VLGKGSKQRLVPVGSHAIAALRQWR----RDSGASADAHVFPGRTGGAISQRAVQIRIKQ 230

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           L    G+      H LRHSFA+H+L + GDLR +Q +LGH  ++TTQIYT+++ ++    
Sbjct: 231 LAVRQGMFKDVHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQH---- 286

Query: 310 MMEIYDQTHPSITQKD 325
           + ++YD  HP   +K 
Sbjct: 287 LAKVYDAAHPRARRKK 302


>gi|269103726|ref|ZP_06156423.1| tyrosine recombinase XerC [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268163624|gb|EEZ42120.1| tyrosine recombinase XerC [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 306

 Score =  255 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 88/315 (27%), Positives = 155/315 (49%), Gaps = 16/315 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++   L +  + + + L  ER LS  T Q+Y+         L      ++ + + +QL  
Sbjct: 5   VIPTSLSRPLERFYEYLRSERELSLHTQQNYKRQLSTIAEQLV-----EMQVTSWQQLDA 59

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R   SK     +   SL   LS ++SFL +L  +     +    +   KK+  LP+ 
Sbjct: 60  GWVRQIASKGMRSGLKASSLGMRLSALRSFLDFLVFQGDLKANPAKGVSAPKKARPLPKN 119

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+  +   L+      +      +  R+ A++ L+YG GLR+SE + L  ++I   +  L
Sbjct: 120 LDVDEMDQLL------SVEGDDPLSIRDRAMMELMYGAGLRLSELVGLNLKDIQLTKGDL 173

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R+ GKGDK RIVP     ++ +  +  +    L  + +  LF   RG  ++    Q+ + 
Sbjct: 174 RVIGKGDKERIVPFSGLAKEWVGNWLKVRAT-LAHSDEPALFVSKRGMRISNRNVQKRME 232

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +  +   +      H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++   
Sbjct: 233 EWGQKQAVSSHINPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH--- 289

Query: 309 WMMEIYDQTHPSITQ 323
            + ++YD+ HP   +
Sbjct: 290 -LAKVYDEAHPRAKR 303


>gi|293602487|ref|ZP_06684933.1| phage integrase family site-specific recombinase [Achromobacter
           piechaudii ATCC 43553]
 gi|292819249|gb|EFF78284.1| phage integrase family site-specific recombinase [Achromobacter
           piechaudii ATCC 43553]
          Length = 335

 Score =  255 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 99/329 (30%), Positives = 159/329 (48%), Gaps = 27/329 (8%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           +  L +  + WL++LE  R  S  TL  Y  +   FL  LA   +       + +++   
Sbjct: 18  TAALPEPMRAWLRHLETNRRYSPHTLDGYRREL-HFLHELADRAK-----LPLDKIANGH 71

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           IR FI++   Q  G RSL R+L+  + F ++         + +  +R  K    LP+AL+
Sbjct: 72  IRQFIARLHAQGRGPRSLARTLAAWRGFYQWWAPAVDLAGNPVAGVRAPKAPRGLPKALS 131

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-------- 182
            +Q   L+D      ++E   +  R+ A+  LLY  GLR+SE + L  +           
Sbjct: 132 VEQTQALLDRPAAKVANE--PVALRDQAMFELLYSSGLRLSELVGLDLRYTRTADYESAG 189

Query: 183 ---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRG 235
               D++ + + GKG K R VP+  +   A+ ++    P              LF G RG
Sbjct: 190 WLKLDEAEVEVLGKGGKRRSVPVGQAALAALSKWIAARPQLAPPSPAPQDAAALFLGARG 249

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           K ++P V Q  + Q  +  GLP     H LRHSFA+H+L +  DLR++Q +LGH  +STT
Sbjct: 250 KRISPRVVQLQLAQFAQAAGLPTHVHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTT 309

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           QIYT ++ ++    + + YDQ HP   +K
Sbjct: 310 QIYTRLDFQH----LAKAYDQAHPRAGRK 334


>gi|227833151|ref|YP_002834858.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975]
 gi|262182358|ref|ZP_06041779.1| site-specific tyrosine recombinase XerD [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454167|gb|ACP32920.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975]
          Length = 292

 Score =  255 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 90/303 (29%), Positives = 148/303 (48%), Gaps = 17/303 (5%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           +L +E+G SK T+ +Y  D  +++ +LA     +  I  +R+++   +  ++   R + +
Sbjct: 2   HLMVEKGASKNTVSNYRRDINRYVDWLA-----ESGITDLRRVTRAHVENYLVFLR-ESL 55

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
              S  R+L   +   K+     +  E     +   K++ +LP  L+ +    L++   +
Sbjct: 56  AQSSASRALIVARGLHKFALAEGMIEEDVAAEVSPPKRAQALPETLSVQDVEALLNA--I 113

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----QSTLRIQGKGDKIR 198
            T      ID R+ A+L +LYG G RISE +SL+  ++  +     +  L + GKGDK R
Sbjct: 114 PTDESATPIDIRDRALLEMLYGTGARISEVISLSVDDVTGEGPASVRDILVLSGKGDKQR 173

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VPL      A+  Y       L       LF   RGK L+       I+   +   L  
Sbjct: 174 LVPLGSHAVTAVENYLVRARPVLATGASHSLFLNTRGKALSRQSAWAAIKTAAQRAHLST 233

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HTLRHSFATHLL  G D+R++Q +LGH  ++TTQIYT+V      D + E++   H
Sbjct: 234 KISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVT----ADSLREVWRTAH 289

Query: 319 PSI 321
           P  
Sbjct: 290 PRA 292


>gi|315152400|gb|EFT96416.1| tyrosine recombinase XerC [Enterococcus faecalis TX0031]
          Length = 299

 Score =  255 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 98/325 (30%), Positives = 164/325 (50%), Gaps = 30/325 (9%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK-IT 59
           ME  N PE+           + + L +ERG S+ T ++Y+ D + F  FL     +  +T
Sbjct: 1   MEEKNWPEL-----------FARYLIVERGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLT 49

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           ++ +      ++RA++S+   Q+    S+ R ++ ++SF ++L K +   E+    +   
Sbjct: 50  VEHL------DVRAYLSELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMK 103

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           KK   LPR   EK+   L +     ++   + +D RN A+L +LYG G+R+SE  +LT  
Sbjct: 104 KKQLRLPRFFYEKEMDALFE-----SAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVD 158

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGK 236
            +    S L + GKG+K R VP     + A+ +Y +     L    Q     +F    G+
Sbjct: 159 AVDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGE 218

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            + P   +  + QL +   L +    H LRH+FATHLL+NG D+R++Q +LGH  LSTTQ
Sbjct: 219 QITPTGIEYVLNQLIKKSSLNVEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQ 278

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSI 321
           IY +V  ++    + + Y   HP  
Sbjct: 279 IYAHVTKES----LQKNYRTFHPRA 299


>gi|307718592|ref|YP_003874124.1| tyrosine recombinase XerC [Spirochaeta thermophila DSM 6192]
 gi|306532317|gb|ADN01851.1| tyrosine recombinase XerC [Spirochaeta thermophila DSM 6192]
          Length = 312

 Score =  255 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 95/328 (28%), Positives = 157/328 (47%), Gaps = 22/328 (6%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           MEG ++  +    L+     +L +L   RGLS+ T++SY  D  +   FL          
Sbjct: 3   MEGGSVSTLPQETLID---RFLAHLSHMRGLSEATVRSYRNDLVKVGAFLEKLG------ 53

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             +   +  +IR  +++    +    S+ R LS ++S+ ++L+K  + ++S +  + ++K
Sbjct: 54  TDLVSATREDIRHCVAEYTLARQAPSSINRMLSSLRSWYRFLRKEGVRSDSPMEGISSVK 113

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LP  L E +   L+D         + +   R+ A+L +LY  G R+ E +SLT   
Sbjct: 114 AGKRLPSFLFEDEVDRLLDI------EGSDFASLRDRALLEVLYSTGCRVQELVSLTTSG 167

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIRGKP 237
           +   +    ++GKG K R++ L    RKA+  Y  L    L       +  LF   +G P
Sbjct: 168 VQVSRGWCVVKGKGGKERLLFLGLGARKALAAYLPLRQALLERMGRREEGALFVNQKGSP 227

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L P      I +  R  GL    + H  RHSFATH+LS G DLR +Q +LGH  LSTTQ+
Sbjct: 228 LTPRGVAYIIERRAREKGLEKRISPHVFRHSFATHVLSRGADLRVVQEMLGHASLSTTQV 287

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           YT+++       +  +Y + HP   + D
Sbjct: 288 YTHLS----LPALKRMYRKAHPHAERSD 311


>gi|54307771|ref|YP_128791.1| site-specific tyrosine recombinase XerD [Photobacterium profundum
           SS9]
 gi|46912194|emb|CAG18989.1| putative integrase/recombinase XerD [Photobacterium profundum SS9]
          Length = 292

 Score =  255 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 92/306 (30%), Positives = 149/306 (48%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + +ERGLS+ TL SY  D  +   +    +   +T      LS  +++ +   
Sbjct: 2   IERFLDAMWMERGLSENTLMSYRNDLTKLRRWSDEKSYRLVT------LSSDDLQRYQQW 55

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    S  R +S I+   +YL + K+  +     M + +    LP+ L E+Q   L
Sbjct: 56  LFDADFKQTSRARMVSAIRRLYQYLYREKVRDDDPSSMMISPRLPKRLPKDLTEEQVGAL 115

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D            I+ R+ A+L LLY  GLR++E +SLT +N    Q  +R+ GKG K 
Sbjct: 116 LD-----APDTNNPIELRDKAMLELLYATGLRVTELVSLTMENTNLRQGVVRVLGKGGKE 170

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +    I E+ D   P  L       LF   R + +    F   I+      G+
Sbjct: 171 RLVPMGENAIDWIEEFIDSGRPLLLGEKSSDVLFPSKRARQMTRQTFWHRIKYYAVIAGI 230

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
              + + H +RH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ 
Sbjct: 231 DTDTLSPHVMRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHA 286

Query: 316 QTHPSI 321
             HP +
Sbjct: 287 THHPRV 292


>gi|261337541|ref|ZP_05965425.1| tyrosine recombinase XerD [Bifidobacterium gallicum DSM 20093]
 gi|270277948|gb|EFA23802.1| tyrosine recombinase XerD [Bifidobacterium gallicum DSM 20093]
          Length = 306

 Score =  255 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 146/309 (47%), Gaps = 15/309 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L ++++ERGLS+ TL +Y  D  Q+L FL     +   +    ++   ++  F+   
Sbjct: 8   RKFLTSMDVERGLSRATLDAYRTDLEQYLTFL-----DARGLNEPTRIRTEDVEQFVQHL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q +   S+ R L+ ++ F ++L + +         M   K    LP  L+      L+
Sbjct: 63  DAQGLQPASIARRLACVRMFHRFLLQERAVAVDVTATMHAPKTGEHLPDVLSVDDVFQLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D      +     +  R+ A+L +LY  G R+SEA+ L   +I +    +R+ GKG K R
Sbjct: 123 D-TAQQMASTGDVVATRDWALLEMLYATGARVSEAVGLNLDDIDETDRVMRLTGKGSKQR 181

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +VP   +  +A+ +Y D     L    +       ++   RGK L+       ++     
Sbjct: 182 LVPFGSTAAQALQQYLDASRPVLEAKAKGERELRAVWLNKRGKRLSRQSAWEVLQTAAGR 241

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      HTLRHSFATHL+  G D+RS+Q +LGH  + TTQIYT+V+     D ++E 
Sbjct: 242 AKLTRPIHPHTLRHSFATHLIQGGADVRSVQELLGHASVQTTQIYTHVSP----DSLIEA 297

Query: 314 YDQTHPSIT 322
           Y   HP   
Sbjct: 298 YAMAHPRAR 306


>gi|148273162|ref|YP_001222723.1| site-specific tyrosine recombinase XerD [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147831092|emb|CAN02037.1| integrase/recombinase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 328

 Score =  255 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 96/326 (29%), Positives = 155/326 (47%), Gaps = 18/326 (5%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           + +PE V   L +    WL+++E+ERGLS+ TLQ+Y  D  ++   LA          + 
Sbjct: 14  DAVPE-VPVALRRAVDRWLRHVEVERGLSRNTLQAYRRDLARYTAHLADEGVADPADASA 72

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
             ++    R  +       +   SL R LS ++SF ++L +  I         R  K  +
Sbjct: 73  AHIAAFAQR--VRDPEHGGLTASSLARMLSSVRSFHRFLVEEGIVEVDVSAEQRPPKLPS 130

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            LP+A++ +    ++D      +   + +  R+ A+L LLY  G R+SE  +LT  +++ 
Sbjct: 131 RLPKAVSIETMGRILD-----ATDGDEPLRVRDKALLELLYATGARVSEITALTVDDVLG 185

Query: 184 DQS----TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKP 237
                   +R+ GKG K RIVP+    R+A+  Y       L         LF G+RG  
Sbjct: 186 ADGAAAELVRVLGKGGKQRIVPVGSFARRAVDAYLVRVRPILAARGSATPALFLGLRGHA 245

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+       I+      G+    + HT RHSFATHL++ G D+R +Q +LGH  ++TTQI
Sbjct: 246 LSRQNAWLVIKAAAERAGVAEEISPHTFRHSFATHLIAGGADVRVVQELLGHSSVATTQI 305

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQ 323
           YT V      D + ++Y   HP   +
Sbjct: 306 YTRVT----VDTLRDVYTTAHPRARR 327


>gi|269467899|gb|EEZ79638.1| site-specific recombinase XerC [uncultured SUP05 cluster bacterium]
          Length = 292

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 87/310 (28%), Positives = 161/310 (51%), Gaps = 20/310 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + K+   ++  L++ERG +  T Q+Y  D ++ L F      +  +++    LS   +  
Sbjct: 1   MQKQINRFILYLKVERGYALNTQQAYARDLQKLLAFT-----QTQSVERWASLSSENLNL 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+   R Q I  R+++R LS I+ FL YL  + +   +    +++ K + SLP+ L+ ++
Sbjct: 56  FVMTMRHQNISGRTIRRHLSSIRGFLSYLVNQGLLEVNCAQGLQSPKVAKSLPKTLDYER 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
            + ++      T   + + + R++A++ +LY CGLR+SE + L  +++   Q  LR+ GK
Sbjct: 116 LVQML------TPKSSAFSELRDAAMVEVLYSCGLRVSELVGLDIEDVDASQGFLRVMGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K+R  PL  S +K+I  Y          +    LF   R + ++    Q  I+     
Sbjct: 170 GSKVRYTPLGESAQKSINRYLQ-----KTSHTNKALFVNNRQERISTRTVQNIIKNRALS 224

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +G+ ++   H LRH+ ATH L +  DLRS+Q  LGH  + +TQ+YT+++       + ++
Sbjct: 225 VGIKVNVHPHMLRHAAATHFLQSSHDLRSVQEFLGHKSIKSTQVYTHLDFLE----LSKV 280

Query: 314 YDQTHPSITQ 323
           YD+ HP   +
Sbjct: 281 YDKCHPRAKK 290


>gi|42519036|ref|NP_964966.1| integrase/recombinase CodV [Lactobacillus johnsonii NCC 533]
 gi|41583323|gb|AAS08932.1| probable integrase/recombinase CodV [Lactobacillus johnsonii NCC
           533]
          Length = 307

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 95/319 (29%), Positives = 146/319 (45%), Gaps = 15/319 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S E  K  + +   L  ER  SK T+ SY  D  +   F      E        Q+   
Sbjct: 1   MSKENDKLIKQFQDYLNYERNYSKNTVNSYLNDLNEAKEFFK----ENGGFSGWDQVKSR 56

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++  F+    TQ     +  R +S ++SF ++L KR++     +  +        LP+  
Sbjct: 57  DVEIFLQNLATQNRSRTTQARKMSSLRSFYRFLVKREVLDNDPMQTISLRLGEKKLPQFF 116

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            EK+   + D++  H     + +  RN A+  L Y  G+R+SE  SL    I  D   + 
Sbjct: 117 YEKEMRQVFDSLAGH-----EKLVVRNRAMFELFYATGMRLSEMASLKLDQIDFDLKIIL 171

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYI 247
           + GKG+K R VP       A+ EY D     L      +  +F   RG+ L     +  +
Sbjct: 172 VHGKGNKDRYVPFGKDAANALKEYCDEGRPALLGKNEDRGYVFLNNRGQKLTGRGIEYIM 231

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +Q+    G+      H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V  K+  
Sbjct: 232 QQVFIKAGVGGKVHPHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKH-- 289

Query: 308 DWMMEIYDQTHPSITQKDK 326
             +   Y +  P   +KD+
Sbjct: 290 --LQADYQKFFPRKDKKDE 306


>gi|296135962|ref|YP_003643204.1| tyrosine recombinase XerD [Thiomonas intermedia K12]
 gi|295796084|gb|ADG30874.1| tyrosine recombinase XerD [Thiomonas intermedia K12]
          Length = 317

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 88/312 (28%), Positives = 146/312 (46%), Gaps = 23/312 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +   L +E GLS  TL +Y  D      +LAF     +   T+R     +++A+I+ 
Sbjct: 21  IDRFCDALWLEDGLSPNTLAAYRRDLTLMARWLAFSRRPPLIEATLR-----DVQAYIAA 75

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  Q     S  R L  ++ F ++  +  + ++   L +   ++    P+ L+E Q   L
Sbjct: 76  RFVQSKATSS-NRRLVVLRRFYRWALREHLRSDDPTLQLDTARQPPRRPKTLSEAQVEAL 134

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +             +  R+ A+L LLY  GLR+SE ++L    +  DQ  ++I GKG K 
Sbjct: 135 L-----AAPEVDTPLGLRDRAMLELLYASGLRVSELVALPVVRVSLDQGVVQIAGKGGKE 189

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKP-------LNPGVFQRYIRQ 249
           R+VP   + +  +  Y      +L      P LF   R          +   +F   I+ 
Sbjct: 190 RLVPFGSAAQDWLQNYLRTARHELLQGRDSPFLFVTARSGQSARETTGMTRQMFWMRIKA 249

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             R  G+ +  + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT++  +     
Sbjct: 250 YARKAGIDVPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHIARER---- 305

Query: 310 MMEIYDQTHPSI 321
           +  ++ + HP  
Sbjct: 306 LKTLHARHHPRA 317


>gi|253576347|ref|ZP_04853677.1| tyrosine recombinase XerD [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251844240|gb|EES72258.1| tyrosine recombinase XerD [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 323

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 78/313 (24%), Positives = 143/313 (45%), Gaps = 16/313 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++  +++  L  +RGLS+ T +SY  D +Q++ +L         I   RQ++   I  
Sbjct: 1   MERDAASFISFLAGQRGLSEATRESYARDLKQYISYLQSKQ-----ISDYRQVTRAGILL 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           + +  +       +++R    +++F +YL + +   +   + +   K     P+ L  ++
Sbjct: 56  YFAYLKDLGKAPATIQRVSVTLRAFFRYLLQERRIEQDPFIMLEMPKVEKKPPQTLTVEE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++            +  R+ A+L LLY  G+R+SE +SL   ++  +   LR  G+
Sbjct: 116 TERLLE-----APKPDTPLGLRDKAMLELLYATGIRVSELISLNKDDVNLELHFLRCTGE 170

Query: 194 GDKIRIVPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
             K RI+P      + +  Y         L+      LF   RG  ++   F + +++  
Sbjct: 171 RGKERILPFGGVTAEWLDLYLREGRSHLILDERENPALFPNRRGGRISRQGFWKLMKKYG 230

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +  G+    T HTLRHSFA HLL  G D+RS+Q +LGH   ST Q+Y           + 
Sbjct: 231 QEAGITSDITPHTLRHSFAVHLLERGADVRSVQELLGHSDASTIQMYV----SRSRSNLK 286

Query: 312 EIYDQTHPSITQK 324
            +YD  HP   ++
Sbjct: 287 TVYDAFHPRTMRE 299


>gi|253690334|ref|YP_003019524.1| tyrosine recombinase XerC [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756912|gb|ACT14988.1| tyrosine recombinase XerC [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 311

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 84/318 (26%), Positives = 151/318 (47%), Gaps = 18/318 (5%)

Query: 7   PEIVSFELLK-ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           PE  S  LL+ +   +L+ L++ER LS LT  SY       +  L+        +   R+
Sbjct: 8   PEAPSSSLLQADVDAFLRYLKVERQLSPLTQTSYLRQLSAIITILSA-----AGVVDWRK 62

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           L    +R+ +S+ +   +   SL   LS ++SFL ++  R + T +    +   +    L
Sbjct: 63  LDAAGVRSVVSRSKRDGLHSGSLALRLSALRSFLDWMVSRGVLTANPAKGISTPRAGRPL 122

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P+ ++  +         L        +  R+  +L ++YG GLR++E + +  Q+I    
Sbjct: 123 PKNMDVDEMDR------LLDIDLDDPLAVRDRTMLEVMYGAGLRLAELVGMDCQHIDLAS 176

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             + + GKG K R +P+  +    +  +  L   +L       +F   +G+ ++    Q+
Sbjct: 177 GEVWVMGKGSKERKLPIGKTAVTWLERWLALR--ELFGPQDDAVFISNQGRRISMRNVQK 234

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
              +     G+      H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++
Sbjct: 235 RFAEWGIKQGVNSHVHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH 294

Query: 306 GGDWMMEIYDQTHPSITQ 323
               +  +YD  HP   +
Sbjct: 295 ----LASVYDAAHPRAKR 308


>gi|307700994|ref|ZP_07638019.1| site-specific tyrosine recombinase XerD [Mobiluncus mulieris
           FB024-16]
 gi|307613989|gb|EFN93233.1| site-specific tyrosine recombinase XerD [Mobiluncus mulieris
           FB024-16]
          Length = 319

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 87/313 (27%), Positives = 146/313 (46%), Gaps = 22/313 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q++L  L +ERG S  T+ +Y+ D ++++ +L     +     T+ Q++  ++  F+   
Sbjct: 18  QDFLNYLSVERGASPHTIAAYQRDLQRYVAYLQILGRD-----TLAQVTEIDLEGFVRAL 72

Query: 79  RTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
                    +G  S++R L+  +S+ +YL        +   +++  K    LP  LN ++
Sbjct: 73  GDGFASFPPLGSTSVRRCLAAARSWHRYLFDSGSLGANVASSVKPAKLPRRLPETLNLEE 132

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ--STLRIQ 191
              L    L   S        R+ A+L  LY  G RISEA++L   +I  +   + +R+ 
Sbjct: 133 MEAL----LAAASSPGDSNSLRDRALLEFLYASGARISEAMNLVLDDIDFETEPALVRLF 188

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQ 249
           GKG K RI  L     +A+  Y       L    Q    +F    GKP++       I+ 
Sbjct: 189 GKGRKERISMLGHQACQALQAYLVRVRPTLAEKGQSRGRVFLNTYGKPMSRQTAWAIIQA 248

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +   +      HTLRH FATHLL  G D+R +Q +LGH  ++TT+IYT V+ +     
Sbjct: 249 AAKRAQIDRPVHPHTLRHCFATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQ----M 304

Query: 310 MMEIYDQTHPSIT 322
           ++E+Y   HP   
Sbjct: 305 LLEVYASAHPRAR 317


>gi|194336037|ref|YP_002017831.1| tyrosine recombinase XerD [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308514|gb|ACF43214.1| tyrosine recombinase XerD [Pelodictyon phaeoclathratiforme BU-1]
          Length = 304

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 150/304 (49%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L  + IER  S  T +SY  D +++LIF+   +        +  ++   I  F+ +
Sbjct: 12  LESFLNYMLIERNFSANTRESYSNDLKRYLIFMQHRSRR------LEMITKEHIEEFMGE 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +   S+ R++S I+SF K+L   +    +   N+   KK+  LP  L   + + L
Sbjct: 66  LYDIGLEASSIARNISAIRSFHKFLVIERTLNTNPAENIHQPKKAQYLPSVLTVDETMRL 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +             +  R+ A+L LLY  G+R+SE +++  Q++  D   +RI GKG K 
Sbjct: 126 LAAPQSVNPPGKYVL--RDKAMLELLYATGVRVSELINIRQQSLYLDAGFVRIFGKGSKE 183

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  S    +  Y  +L    +  N    LF   RG  L+       +++     G+
Sbjct: 184 RLVPVGTSAIGWVTRYQAELRIALVQRNSDDYLFLNARGIKLSRMALFTMVQKYAVMAGI 243

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HT RH+FATHLL  G DLR++Q +LGH  + TTQIYT+++      ++ E++  
Sbjct: 244 EKNISPHTFRHTFATHLLEGGADLRAVQEMLGHRSIVTTQIYTHID----RLFIKEVHKT 299

Query: 317 THPS 320
            HP 
Sbjct: 300 FHPR 303


>gi|120602477|ref|YP_966877.1| tyrosine recombinase XerD [Desulfovibrio vulgaris DP4]
 gi|120562706|gb|ABM28450.1| tyrosine recombinase XerD subunit [Desulfovibrio vulgaris DP4]
 gi|311233936|gb|ADP86790.1| tyrosine recombinase XerD [Desulfovibrio vulgaris RCH1]
          Length = 321

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 83/310 (26%), Positives = 140/310 (45%), Gaps = 16/310 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L      WL++L +ERGL++ TL +Y  D  +  +FL            + ++    +  
Sbjct: 24  LAPVMDRWLEHLLVERGLAENTLAAYSADLIELQVFLEERG------CLLAEVDEQTLFM 77

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            +   R + +  R+L R L+ ++ F  +            L + N K + +LP  L   +
Sbjct: 78  HVVDLRRRGMAGRTLARHLATLRGFFAFAVGEGELEADPALFLENPKLARNLPDVLTRDE 137

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
             T++          +  +  R+  +L L+Y  GLR+SE  +L P +       +R+ GK
Sbjct: 138 MATIL-----ARPDLSDRLGFRDRTMLELMYAAGLRVSELCALRPLDFDAQAGVVRVFGK 192

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K RIVP+       +  Y           ++  +F    GK L+     + +++    
Sbjct: 193 GAKERIVPVHHVSCALVTAYLRD-WRPAFSPVEPAMFLNRSGKGLSRQAVWKVVKRHVAE 251

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    + HT RHSFATHLL  G DLRS+Q +LGH  +S T+IYT+V      D +  I
Sbjct: 252 AGIHKDISPHTFRHSFATHLLEGGADLRSVQLLLGHADISATEIYTHV----QADRLRRI 307

Query: 314 YDQTHPSITQ 323
           ++  HP   +
Sbjct: 308 HNAHHPRTRR 317


>gi|32474160|ref|NP_867154.1| integrase/recombinase [Rhodopirellula baltica SH 1]
 gi|32444697|emb|CAD74699.1| integrase/recombinase [Rhodopirellula baltica SH 1]
          Length = 325

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 86/306 (28%), Positives = 145/306 (47%), Gaps = 20/306 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
             +L  L+ E  L+  T+ +Y  D ++F+ ++               L+ TE+  F++  
Sbjct: 37  DEFLVYLKRECHLADNTVAAYGRDMKRFVTWMDGRRP--------ADLTITELSDFVASL 88

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   S+ R++  I++F KYL+   IT ++    +   K    +P  L+  +    +
Sbjct: 89  HGEGLAPASISRAIVAIRTFFKYLQLEGITVDNPAELLATQKAWQRMPGVLSPNEVEAFL 148

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                    ++     R+ A+L +LY  G R SE  +L  +++  D+ TLR  GKGDK R
Sbjct: 149 -----SAVKKSDSFWQRDRALLEVLYATGCRASEVCTLRVRDLTLDEKTLRCHGKGDKQR 203

Query: 199 IVPLLPSVRKAILEYYDLCPF---DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           +VP+     +AI  Y +       D N      LF    GK L+     R +++  +  G
Sbjct: 204 MVPIGGRAIRAIQLYLEESRHILADRNPGQIDELFLSRGGKALDRIQLWRLVKRYAKRAG 263

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + H+LRHSFATHLL+ G DLR +Q +LGH  + TTQIYT+V        +  ++ 
Sbjct: 264 ISDEISPHSLRHSFATHLLAGGADLRQVQEMLGHASIQTTQIYTHV----EHSRLQRVHR 319

Query: 316 QTHPSI 321
             HP  
Sbjct: 320 DFHPRA 325


>gi|293391879|ref|ZP_06636213.1| tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290952413|gb|EFE02532.1| tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 297

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 93/302 (30%), Positives = 145/302 (48%), Gaps = 17/302 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L I +GLS  T+ SY  D      +L           ++  L   +++ F+ +R  
Sbjct: 10  FLNELWIGKGLSPNTVASYRLDLTALCDWLEARH------LSLLSLDAVDLQTFLGERVE 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     S  R LS I+   +YL + K  T+     + + K  N LP+ L E+Q   L++ 
Sbjct: 64  QDYKATSTARLLSAIRKLFQYLYQEKYRTDDPSAVLSSPKLPNRLPKYLTEQQVTDLLNV 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L        I+ R+ A+L LLY  GLR++E +SL   +I  +Q  +R+ GKG K RIV
Sbjct: 124 QSLEQP-----IELRDKAMLELLYATGLRVTELVSLNTNSINLNQGVVRVIGKGKKERIV 178

Query: 201 PLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+       + ++     P  L       LF   RG  +    F   I+       +   
Sbjct: 179 PMGEEATHWVKQFMLFARPMLLGGQSSDVLFPSRRGTQMTRQTFWHRIKHYAVLAEIDSE 238

Query: 260 -TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  ++++ H
Sbjct: 239 MLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER----LKRLHERYH 294

Query: 319 PS 320
           P 
Sbjct: 295 PR 296


>gi|256965045|ref|ZP_05569216.1| phage integrase [Enterococcus faecalis HIP11704]
 gi|307273143|ref|ZP_07554389.1| tyrosine recombinase XerC [Enterococcus faecalis TX0855]
 gi|256955541|gb|EEU72173.1| phage integrase [Enterococcus faecalis HIP11704]
 gi|306510128|gb|EFM79152.1| tyrosine recombinase XerC [Enterococcus faecalis TX0855]
          Length = 299

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 98/325 (30%), Positives = 163/325 (50%), Gaps = 30/325 (9%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK-IT 59
           ME  N PE+           + + L +ERG S+ T ++Y+ D + F  FL     +  +T
Sbjct: 1   MEEKNWPEL-----------FARYLIVERGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLT 49

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           ++ +      ++RA++S+   Q+    S+ R ++ ++SF ++L K +   E+    +   
Sbjct: 50  VEHL------DVRAYLSELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMK 103

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           KK   LPR   EK+   L +     ++   + +D RN A+L +LYG G+R+SE  +LT  
Sbjct: 104 KKELRLPRFFYEKEMDALFE-----SAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVD 158

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGK 236
            +    S L + GKG+K R VP     + A+ +Y +     L    Q     +F    G+
Sbjct: 159 AVDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGE 218

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            + P   +  + QL +   L      H LRH+FATHLL+NG D+R++Q +LGH  LSTTQ
Sbjct: 219 QITPTGIEYVLNQLIKKSSLNAEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQ 278

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSI 321
           IY +V  ++    + + Y   HP  
Sbjct: 279 IYAHVTKES----LQKNYRTFHPRA 299


>gi|255534331|ref|YP_003094702.1| Integrase [Flavobacteriaceae bacterium 3519-10]
 gi|255340527|gb|ACU06640.1| Integrase [Flavobacteriaceae bacterium 3519-10]
          Length = 302

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 96/316 (30%), Positives = 160/316 (50%), Gaps = 18/316 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +   E +K+ +++L+    ER  S  TL +Y  D R+   +  F+ +    +    ++SY
Sbjct: 2   MTWTEKIKDFESFLKY---ERNFSDNTLDAYLRDIRKLSDYAEFHLDGTGPL----EISY 54

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             I+ ++ +   QK  +RS  R +S IK+F KYL + +   ++    + + K    LP  
Sbjct: 55  ENIQEYLFQLSKQKFSERSQARWISSIKAFFKYLAEDEAREDNPTTLLESPKLGLYLPDT 114

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+ +    ++  + + T      +  RN  ++ +LYGCGLR+SE + L   NI   +  L
Sbjct: 115 LSFEDVERIIKAINISTD-----LGRRNQCMIEVLYGCGLRVSELIDLKISNINFKELYL 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           ++ GKGDK R VPL     K I EY       + +N   +  LF   RG  ++  +    
Sbjct: 170 KVDGKGDKSRFVPLATYTAKLIKEYIQEIRSKYKINKKCEDVLFLNSRGSAMSRVIVFII 229

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           I++L    G+    + HT RHSFATHLL NG DLR IQ +LGH  ++TT+IYT++ ++  
Sbjct: 230 IKELTEKAGINKKISPHTFRHSFATHLLQNGADLRYIQEMLGHSSITTTEIYTHLKNEE- 288

Query: 307 GDWMMEIYDQTHPSIT 322
              + ++    HP   
Sbjct: 289 ---LRDVILNFHPRNK 301


>gi|84625422|ref|YP_452794.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|84369362|dbj|BAE70520.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 305

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 89/316 (28%), Positives = 150/316 (47%), Gaps = 19/316 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK-----ITIQTIRQLSYT 69
           +     +L  L++ER +S  TL +Y  D    + +      E       T     QL   
Sbjct: 1   MSSVDEFLTYLQVERQVSAHTLDAYRRDLAALVAWTGERNAEDGAQQTATPVDSAQLDSA 60

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R F++    + +  +SL+R LS  +S+  +L K      S    +R  K    LP+ L
Sbjct: 61  HLRQFVAAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIAASPAAALRAPKAQRKLPQVL 120

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  +A+ LV+            +  R+ A+L L Y  GLR+SE  +L  +++  D   + 
Sbjct: 121 DADEAVRLVEVP------TDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVM 174

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG K R+VP+      A+ ++      D   +    +F G  G  ++    Q  I+Q
Sbjct: 175 VLGKGSKQRLVPVGSHAIAALRQWR----RDSGASADAHVFPGRAGGAISQRAVQIRIKQ 230

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           L    G+      H LRHSFA+H+L + GDLR +Q +LGH  ++TTQIYT+++ ++    
Sbjct: 231 LAVRQGMFKDVHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQH---- 286

Query: 310 MMEIYDQTHPSITQKD 325
           + ++YD  HP   +K 
Sbjct: 287 LAKVYDAAHPRARRKK 302


>gi|71734696|ref|YP_277090.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|123761139|sp|Q48C04|XERC_PSE14 RecName: Full=Tyrosine recombinase xerC
 gi|71555249|gb|AAZ34460.1| tyrosine recombinase XerC [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 299

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 90/311 (28%), Positives = 148/311 (47%), Gaps = 17/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +    +  +L  ER +S  TL++Y  D  + L +      +K    +   L    +R+
Sbjct: 1   MEQHLDAYCMHLRSERQVSPHTLEAYRRDLSKVLAYC-----QKAQRSSWNDLDIQHLRS 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F +++  Q    RSL R LS ++ F KYL +  I        +   K    LP+ L+  +
Sbjct: 56  FTARQHQQGQSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDR 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D  +     E  ++  R+ AIL LLY  GLR+SE   L    +      +++ GK
Sbjct: 116 TAQLLDGGV-----EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R++P+    R+A+  +  L    L       +F   +GK L P   Q  ++     
Sbjct: 171 GSKTRVLPVGSKARQALEIWLPLR--ALTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGER 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L  +   H LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +
Sbjct: 229 -ELGQNLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATV 283

Query: 314 YDQTHPSITQK 324
           YD  HP   +K
Sbjct: 284 YDSAHPRAKRK 294


>gi|306818595|ref|ZP_07452318.1| tyrosine recombinase XerD [Mobiluncus mulieris ATCC 35239]
 gi|304648768|gb|EFM46070.1| tyrosine recombinase XerD [Mobiluncus mulieris ATCC 35239]
          Length = 319

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 87/313 (27%), Positives = 146/313 (46%), Gaps = 22/313 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q++L  L +ERG S  T+ +Y+ D ++++ +L     +     T+ Q++  ++  F+   
Sbjct: 18  QDFLNYLSVERGASPHTIAAYQRDLQRYVAYLQILGRD-----TLAQVTEIDLEGFVRAL 72

Query: 79  RTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
                    +G  S++R L+  +S+ +YL        +   +++  K    LP  LN ++
Sbjct: 73  GDGFASFPPLGSTSVRRCLAAARSWHRYLFDSGSLGANVASSVKPAKLPRRLPETLNLEE 132

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ--STLRIQ 191
              L    L   S        R+ A+L  LY  G RISEA++L   +I  +   + +R+ 
Sbjct: 133 MEAL----LAAASSPGDSNSLRDRALLEFLYASGARISEAMNLVLDDIDFETEPALVRLF 188

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQ 249
           GKG K RI  L     +A+  Y       L    Q    +F    GKP++       I+ 
Sbjct: 189 GKGRKERISMLGRQACQALQAYLVRVRPTLAEKGQSRGRVFLNTYGKPMSRQTAWAIIQA 248

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +   +      HTLRH FATHLL  G D+R +Q +LGH  ++TT+IYT V+ +     
Sbjct: 249 AAKRAQIDRPVHPHTLRHCFATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQ----M 304

Query: 310 MMEIYDQTHPSIT 322
           ++E+Y   HP   
Sbjct: 305 LLEVYASAHPRAR 317


>gi|299771869|ref|YP_003733895.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1]
 gi|298701957|gb|ADI92522.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1]
          Length = 306

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 90/320 (28%), Positives = 149/320 (46%), Gaps = 19/320 (5%)

Query: 2   EGNNLPEIVS-FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           +   +P  V   E L   Q +   L  +  +S  T  +Y  D  Q               
Sbjct: 4   KKPRIPSPVQIPEHLSFLQGFRDYLVAQ-TVSPHTRNAYLSDLIQCSELHQK-------- 54

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             + Q +  +I   + +        RS+ R LS ++ F K+L+++K+ +++ +    + K
Sbjct: 55  TALPQWTSDDIADVLIELTKAGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPK 114

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
              +LP+ L+E+    L+             +  R+ A+  +LY CGLR+SE L+L  + 
Sbjct: 115 IGRALPKDLSEEDVEALI-----QAPDINTALGLRDRAMFEVLYACGLRVSELLNLRLEL 169

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I   Q  LR+ GKG+K R+VPL     + +  Y       L  +    LF    G  ++ 
Sbjct: 170 INLKQGYLRVTGKGNKERLVPLGQFACEWVERYLHNARPQLYKSSTDYLFLTQHGGIMSR 229

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             F   I++      +    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+
Sbjct: 230 QNFWYAIKRYALQANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTH 289

Query: 301 VNSKNGGDWMMEIYDQTHPS 320
           V        M +++++ HP 
Sbjct: 290 VAQVR----MQQLHEKHHPR 305


>gi|88803246|ref|ZP_01118772.1| putative tyrosine recombinase [Polaribacter irgensii 23-P]
 gi|88780812|gb|EAR11991.1| putative tyrosine recombinase [Polaribacter irgensii 23-P]
          Length = 298

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 98/310 (31%), Positives = 148/310 (47%), Gaps = 16/310 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E     + +   L+IERGLSK T+ SY  D  +  +F   + + KITI  I  ++   I+
Sbjct: 2   EWKHAIKEYQMYLKIERGLSKNTVDSYTKDIEKLCLF---FCKNKITISPIN-INSDLIK 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            FI     Q I  RS  R +SG++SF  YL   +    +    +   K    LP  L++ 
Sbjct: 58  QFIYDIAKQ-INPRSQARIISGLRSFFDYLIFEEYRVLNPTDLLETPKIGKKLPDTLSQD 116

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L   + L      +     N  +L  +Y CGLR+SE ++L   ++  ++  +R+ G
Sbjct: 117 DIDALFSAIDLSHPQGER-----NRTLLETMYSCGLRVSELITLKVSDLFFEEGFIRVLG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           KG+K R VP+       I  Y        +     +  LF   RGK L   +    ++ L
Sbjct: 172 KGNKERYVPIHKDAESYISIYKRTIRTHIEPKKGFEDTLFLNRRGKGLTRQMIFIILKDL 231

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              + L    + HTLRHSFATHLL NG DLR IQ ILGH  ++TT+IY +V+      ++
Sbjct: 232 AFKIDLKKKISPHTLRHSFATHLLQNGADLRVIQQILGHESITTTEIYVHVD----KTYL 287

Query: 311 MEIYDQTHPS 320
            E+ +  HP 
Sbjct: 288 KEVVETFHPR 297


>gi|302346034|ref|YP_003814387.1| phage integrase, N-terminal SAM domain protein [Prevotella
           melaninogenica ATCC 25845]
 gi|302149123|gb|ADK95385.1| phage integrase, N-terminal SAM domain protein [Prevotella
           melaninogenica ATCC 25845]
          Length = 314

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 155/309 (50%), Gaps = 16/309 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            + + L++E+G S  TL +Y  D  +   +LA    E++ +  ++        AFIS   
Sbjct: 13  RYRRYLKLEKGYSVNTLDAYMRDVDKLFRYLAV---EQVDVLDVKLEDLEHFAAFISDL- 68

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              IG RSL R LSG++ F ++L             + + K+ + LP  L+  +   L  
Sbjct: 69  --GIGPRSLARILSGVRQFYRFLVIDGYLEVDPTELLESPKQPDHLPEVLSTAEVDLLEQ 126

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            + L     +KW   RN AI+ +L+ CGLR+SE  +L   N+  ++  +R+ GKG K R+
Sbjct: 127 AIDL-----SKWEGHRNRAIIEVLFSCGLRVSELTNLKLSNLYIEEQYIRVMGKGSKERL 181

Query: 200 VPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+ P     +  ++       +    +  +F   RG+ L   +    I++     G+  
Sbjct: 182 VPISPRALDELSYWFADRNVMKIKPGEEDYVFLNRRGQHLTRTMILIMIKRYAVEAGIKK 241

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++      ++E     H
Sbjct: 242 TISPHTLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDTSTLRQEILE----HH 297

Query: 319 PSITQKDKK 327
           P   Q +++
Sbjct: 298 PRNIQYNER 306


>gi|78484996|ref|YP_390921.1| tyrosine recombinase XerD [Thiomicrospira crunogena XCL-2]
 gi|78363282|gb|ABB41247.1| tyrosine recombinase XerD subunit [Thiomicrospira crunogena XCL-2]
          Length = 297

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 86/313 (27%), Positives = 147/313 (46%), Gaps = 19/313 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +   L  E  +++Q L +  GLS  TLQ+Y+ D ++        T+  +    + Q S  
Sbjct: 1   MPNPLTPEITDFIQYLRLNEGLSDNTLQAYQRDLKK--------TQLALGKTDLSQASRE 52

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++  ++ +    ++   S+ R LS +K F  +L       +     ++  +    +P  +
Sbjct: 53  QLEDYLFQLHVDQVNPSSIARCLSALKRFYLFLILHNRIQQDPAAQLKAPQLIKKIPSVI 112

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +E Q   L+     +    T  +  R+ AIL L+Y  GLR+SE ++L  + +      ++
Sbjct: 113 SEAQVEALL-----NAPDLTTPLGVRDKAILELMYASGLRVSELVNLPYEQLNLSAGLVQ 167

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYI 247
           + GKG+K RIVP+     +AI  Y       L         LF    G+ +        I
Sbjct: 168 VTGKGNKERIVPIGQMAIEAIEAYLKSARPALVGKQKWVSTLFVSRIGRTMTRQTLWHRI 227

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           + L     +    + H LRH+FATHL+++G DLR++Q +LGH  LSTTQIYT+V  +   
Sbjct: 228 KNLALQADIRSQLSPHGLRHAFATHLINHGADLRTVQLLLGHSDLSTTQIYTHVAKER-- 285

Query: 308 DWMMEIYDQTHPS 320
             +  I+ Q HP 
Sbjct: 286 --LQSIHHQHHPR 296


>gi|152979627|ref|YP_001345256.1| site-specific tyrosine recombinase XerC [Actinobacillus
           succinogenes 130Z]
 gi|171704362|sp|A6VQS4|XERC_ACTSZ RecName: Full=Tyrosine recombinase xerC
 gi|150841350|gb|ABR75321.1| tyrosine recombinase XerC [Actinobacillus succinogenes 130Z]
          Length = 295

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 93/311 (29%), Positives = 151/311 (48%), Gaps = 17/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +    Q +   L IER LS  TL +Y          L         I++ +Q++ + +R 
Sbjct: 1   MQNALQKYYDFLRIERRLSPYTLTNYRRQLSAVTELLTQN-----GIRSWQQVTPSVVRF 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            +++ R   + ++SL   LS ++ FL YL  ++    +    +   K+   LP+ ++++Q
Sbjct: 56  ILAESRKAGLHEKSLALRLSALRQFLAYLVVQEELKVNPATGISAPKQGKYLPKNIDQEQ 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+DN         + ID R+ A+L L+Y  GLR+SE   L   ++      +R+ GK
Sbjct: 116 IGKLLDN------RSNEPIDIRDRAMLELMYSSGLRLSELHGLDLNHVNLQSREVRVLGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K RI+P+      A+L++  +            LF   +G  L P   Q+ +      
Sbjct: 170 GSKERILPVGHQALDAVLDWLQVRLR--FNPKDNALFVSSQGGRLTPRAIQKRMEIWGVK 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL      H LRHSFATH+L    DLR++Q +LGH  L+TTQIYT+++ K+  D    +
Sbjct: 228 QGLSTHLNPHKLRHSFATHMLEASADLRAVQELLGHSNLATTQIYTHLDFKHLTD----V 283

Query: 314 YDQTHPSITQK 324
           YDQ HP   +K
Sbjct: 284 YDQAHPRAKRK 294


>gi|289428621|ref|ZP_06430304.1| phage integrase, N-terminal SAM domain protein [Propionibacterium
           acnes J165]
 gi|295131071|ref|YP_003581734.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes SK137]
 gi|289158019|gb|EFD06239.1| phage integrase, N-terminal SAM domain protein [Propionibacterium
           acnes J165]
 gi|291376498|gb|ADE00353.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes SK137]
          Length = 300

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 146/308 (47%), Gaps = 10/308 (3%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L    +++  +L   R  S  T++ Y  D    +     + ++     T+ ++  +++RA
Sbjct: 3   LTVPVEDFCGHLSALRR-SPNTIRGYRADLIDLMGHAHSHGDD-----TLGRIGTSQVRA 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++  R       +++R  S  + F ++     + +      + + K    LP  L   Q
Sbjct: 57  WLADTRVAGASAATMQRRWSAARVFFRWAANEGLISADPTTALNSAKVPKRLPATLGVDQ 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           A  ++D  +    H+     AR++AIL +LYG GLR+ E   L   ++   + T+++ GK
Sbjct: 117 ARHILDEAVAQARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVKVTGK 176

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GDK R VP+     +AI  +       +  +    LF G RG+ ++  V +R +    R 
Sbjct: 177 GDKERTVPMGAPALRAIDTWLPRREEWVGPHSGQALFLGARGRRIDQRVVRRVVHTHLRA 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                    H LRH+ ATHLL  G DLR++Q ILGH  L+TTQIYT+V+++     +   
Sbjct: 237 EPDSPDLGPHGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTER----LRTA 292

Query: 314 YDQTHPSI 321
           + Q HP  
Sbjct: 293 FRQAHPRA 300


>gi|269795295|ref|YP_003314750.1| tyrosine recombinase XerD [Sanguibacter keddieii DSM 10542]
 gi|269097480|gb|ACZ21916.1| tyrosine recombinase XerD [Sanguibacter keddieii DSM 10542]
          Length = 317

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 91/319 (28%), Positives = 146/319 (45%), Gaps = 25/319 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +  Q +L +L IERG S  T+ +Y  D  +++ +L            +  ++ T +  
Sbjct: 11  LRRAVQGYLDHLTIERGRSTNTVAAYRRDLDRYVAYLESLD------LALEDVTTTVVED 64

Query: 74  FISKRRTQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           +++  RT       +   S  RSL+ ++ +  +     +   +    +R   +   LP+A
Sbjct: 65  YVTVVRTGSDGRSALAAGSAARSLAAVRGWHTFCVAEGLAPANPTAGVRPPSQGKRLPKA 124

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-- 186
           ++      L    L            RN A+L LLY  G RISEA++L   ++       
Sbjct: 125 ISTYDVERL----LAAAGAGDTVASVRNRALLELLYSTGARISEAVTLDVDDLDLTPGLE 180

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQ 244
           ++R+ GKG K R+VP+     +AI  Y       L         +F   RG  L+     
Sbjct: 181 SVRLFGKGSKERVVPVGSFAVEAIQAYLVRARPVLMAAGRGTPAVFLNTRGARLSRQSAW 240

Query: 245 RYIRQLRRYLGLP--LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           + +R      GL      + HTLRHSFATHLLS G D+R +Q +LGH  ++TTQ+YT V 
Sbjct: 241 QVLRTSAETAGLDGAEHISPHTLRHSFATHLLSGGADVRVVQELLGHASVTTTQLYTMVT 300

Query: 303 SKNGGDWMMEIYDQTHPSI 321
           +    D + E+Y Q+HP  
Sbjct: 301 A----DSLREVYVQSHPRA 315


>gi|257422531|ref|ZP_05599521.1| recombinase [Enterococcus faecalis X98]
 gi|257164355|gb|EEU94315.1| recombinase [Enterococcus faecalis X98]
 gi|315155672|gb|EFT99688.1| tyrosine recombinase XerC [Enterococcus faecalis TX0043]
          Length = 299

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 98/325 (30%), Positives = 163/325 (50%), Gaps = 30/325 (9%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK-IT 59
           ME  N PE+           + + L +ERG S+ T ++Y+ D + F  FL     +  +T
Sbjct: 1   MEEKNWPEL-----------FARYLIVERGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLT 49

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           ++ +      ++RA++S+   Q+    S+ R ++ ++SF ++L K +   E+    +   
Sbjct: 50  VEHL------DVRAYLSELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMK 103

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           KK   LPR   EK+   L +     ++   + +D RN A+L +LYG G+R+SE  +LT  
Sbjct: 104 KKQLRLPRFFYEKEMDALFE-----SAQGEQPLDLRNKALLEVLYGTGIRVSECANLTVD 158

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGK 236
            +    S L + GKG+K R VP     + A+ +Y +     L    Q     +F    G+
Sbjct: 159 AVDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGE 218

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            + P   +  + QL +   L      H LRH+FATHLL+NG D+R++Q +LGH  LSTTQ
Sbjct: 219 QITPTGIEYVLNQLIKKSSLNAEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQ 278

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSI 321
           IY +V  ++    + + Y   HP  
Sbjct: 279 IYAHVTKES----LQKNYRTFHPRA 299


>gi|88705495|ref|ZP_01103205.1| site-specific recombinase [Congregibacter litoralis KT71]
 gi|88700008|gb|EAQ97117.1| site-specific recombinase [Congregibacter litoralis KT71]
          Length = 312

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 85/319 (26%), Positives = 155/319 (48%), Gaps = 15/319 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S  L +    +L+ L   R LS  T+ +Y+ D   F  F      +  ++Q   ++  +
Sbjct: 7   LSAGLDERISAFLEYLRSVRRLSPHTVAAYQRDLGSFRAFC-----DAQSLQDCDEVQES 61

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R ++++   + +   SL+R LS ++++ ++         +  L ++  +K   LP  L
Sbjct: 62  HVRQWLAQGHRRSLAPNSLQRQLSALRAYFEWESSDTGRRRNPALAVQAPRKRRKLPGTL 121

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              Q    +       +     +  R+ A+  L Y  GLR+ E  ++   +I   QS + 
Sbjct: 122 EADQVGVYLR------ADAEDPLQLRDLAMAELFYSSGLRLGELRAVNLYDIDRGQSLIS 175

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG K R VP+  +   AI  Y    P  ++ + Q  LF   RG+ ++    Q  ++ 
Sbjct: 176 VTGKGSKTRTVPVGSAAIAAIDAYLPHRPAAVSDDDQEALFLSSRGRRISERSIQSRVQL 235

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           L    GL      H LRHSFA+HLL + GDLR++Q +LGH  +STTQIYT+++ ++    
Sbjct: 236 LAERNGLGRDVHPHMLRHSFASHLLESSGDLRAVQELLGHSDISTTQIYTHLDFQH---- 291

Query: 310 MMEIYDQTHPSITQKDKKN 328
           + ++YD +HP   ++   +
Sbjct: 292 LAKVYDGSHPRARKQKDDD 310


>gi|288553072|ref|YP_003425007.1| integrase/recombinase [Bacillus pseudofirmus OF4]
 gi|288544232|gb|ADC48115.1| integrase/recombinase [Bacillus pseudofirmus OF4]
          Length = 321

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 89/309 (28%), Positives = 146/309 (47%), Gaps = 17/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
              Q +++ +++E+  S  T++SY  D   F  F+  +            ++Y  +R+++
Sbjct: 27  DSIQMFVRYMQVEKNYSLHTVKSYLSDIEDFCHFMKEH-----NCAAFSDVTYLFVRSYL 81

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +     S+ R +S ++S   +L + +  T +        K+++ LP  L E++  
Sbjct: 82  TFLYDKAYARNSVARKISSMRSLFHFLMREEELTRNVFAETHLPKQASKLPSFLYEEEMD 141

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L      +T      +D R+ AIL LLY  G+R+ E   L   +I     T  ++GKG+
Sbjct: 142 ELFKAFEGNTP-----LDKRDRAILELLYATGMRVGECSQLDVADIDLRIGTAFVKGKGN 196

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K R VP+      A+ EY +    +L     +    LF   RG PL     +R + +   
Sbjct: 197 KERYVPIGSFACDALHEYIEDARVNLLKKGNSETKRLFLNYRGGPLTDRSIRRMLAKRVE 256

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +      H LRHSFATHLL+NG DLR +Q +LGH  LSTTQ+YT+V      D + E
Sbjct: 257 EASMQKHIRPHDLRHSFATHLLNNGADLRVVQELLGHEHLSTTQVYTHVT----KDRLRE 312

Query: 313 IYDQTHPSI 321
           +Y   HP  
Sbjct: 313 VYKNHHPRA 321


>gi|58337257|ref|YP_193842.1| integrase-recombinase [Lactobacillus acidophilus NCFM]
 gi|227903842|ref|ZP_04021647.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796]
 gi|58254574|gb|AAV42811.1| integrase-recombinase [Lactobacillus acidophilus NCFM]
 gi|227868729|gb|EEJ76150.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796]
          Length = 301

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 99/316 (31%), Positives = 172/316 (54%), Gaps = 18/316 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + +  L  +  ++L+  +IERGLS  T+ +Y  D  ++L F+    +E +T         
Sbjct: 1   MTNSNLEDQIDDYLRYSQIERGLSVNTINAYRQDLEEYLTFVK---KENMTSWPTE---A 54

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           T++ AF++++        S+ R +S ++ F ++L ++ I   + +L +   KK + LP A
Sbjct: 55  TDVDAFLARQHDLNKATSSISRLISSLRKFYQWLARQNIQKLNPMLEIDLPKKEHKLPIA 114

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L + + + L+D       +  + +  R+ AIL  LY  G+R+SE ++L  Q++ +D   +
Sbjct: 115 LTQDEVVNLLDQ-----PNTKQKLGLRDKAILETLYATGMRVSELINLKLQDLHEDLGLV 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI---QLPLFRGIRGKPLNPGVFQR 245
           R+ GKG K R++P+       + +Y       L LN+      +F   RGK L      +
Sbjct: 170 RVLGKGAKERLIPISSVALDWLKKYEKQVRDPLILNVGKDDEHIFLNNRGKQLTRQAIWQ 229

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            I++  +  G+    T HTLRH+FATHLL NG DLR +Q ILGH  +STTQIYTN++ K+
Sbjct: 230 MIKKYCQLAGIAKDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKH 289

Query: 306 GGDWMMEIYDQTHPSI 321
               ++++Y +THP +
Sbjct: 290 ----ILQVYQKTHPRL 301


>gi|78356628|ref|YP_388077.1| site-specific recombinase XerD-like [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219033|gb|ABB38382.1| Site-specific recombinase XerD-like protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 332

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 108/325 (33%), Positives = 165/325 (50%), Gaps = 16/325 (4%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P+     L    + ++  L +E+G S  T++ Y CD  QF  FL       +++ T   +
Sbjct: 8   PDFNLPPLPDTAEMYMGYLALEKGYSSATVRGYACDLAQFEDFLQR---RDMSLDTPADI 64

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
               I  F++    Q +G  S+ R LS ++ F +YL ++          + N +++   P
Sbjct: 65  VPRTIHDFLADLHRQHVGKSSMGRKLSALRGFFRYLARKGFIRSVPTEGITNPRQAQRSP 124

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDA--------RNSAILYLLYGCGLRISEALSLTP 178
           RALN  QA  ++D      S     +          R+ A+  LLYG GLRISEAL+L  
Sbjct: 125 RALNVDQAYAVLDTRTQAASRAQVHVRQAHKREQLTRDLALAELLYGSGLRISEALALDL 184

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKP 237
            +       +++ GKG K RIVPL  + R+A+  + D+    D++   +  +F G RG  
Sbjct: 185 CHTDPSSGLIKVTGKGSKERIVPLSDTSRQALQLWLDVRETLDVSGGAEQAVFLGARGGR 244

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           LN     R I  L R  GLP + + H LRHSFATHLL  G D+RS+Q +LGH RL+TTQ 
Sbjct: 245 LNRRQALRIIEDLCRAAGLPQAVSPHALRHSFATHLLEAGADMRSVQELLGHERLTTTQR 304

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSIT 322
           YT++  +     ++E+YD+ HP   
Sbjct: 305 YTHLTLR----KIVEVYDRAHPGSK 325


>gi|326799953|ref|YP_004317772.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21]
 gi|326550717|gb|ADZ79102.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21]
          Length = 298

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 91/307 (29%), Positives = 154/307 (50%), Gaps = 16/307 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             +++ Q L +ER L+K ++++Y  D  + L   A Y+ +K        +   +IR F+ 
Sbjct: 6   AIKDFKQYLRLERSLAKNSIEAYLHDVEK-LRQHALYSHKK----DPNAILTQDIRDFLE 60

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              +  +   S  R LSGIK+F  YL        +    +   +    LP  L+  +   
Sbjct: 61  WIYSLGMSAHSQARVLSGIKTFYHYLTLEGAMEHNPAALIEAPRLGRKLPDTLSIVEIDA 120

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+  + L T         RN A+L +LY CGLR+SE ++L   N+  +   +R+ GKG+K
Sbjct: 121 LIGAIDLSTPE-----GLRNKAMLEVLYSCGLRVSELVNLKISNLFLEIEFIRVTGKGNK 175

Query: 197 IRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            R++P+  S  K +  Y      +      ++  +F   RG PL+  +    I++L   +
Sbjct: 176 ERLIPIGHSAIKHLQIYLQHTRKEGPQKPGMEDYVFLNRRGSPLSRVMVFLIIKELAIKV 235

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           GL  + + HT RHSFATHL+  G DLR++Q +LGH  +STT+IYT+++     D++  + 
Sbjct: 236 GLKKTISPHTFRHSFATHLIEGGADLRAVQDMLGHESISTTEIYTHLD----RDYLRSVM 291

Query: 315 DQTHPSI 321
            + HP  
Sbjct: 292 IEFHPRA 298


>gi|330870011|gb|EGH04720.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330892013|gb|EGH24674.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 290

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 90/301 (29%), Positives = 146/301 (48%), Gaps = 17/301 (5%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           +L  ER +S  TL++Y  D  + L +      +K  + +   L    +R+F +++  Q  
Sbjct: 2   HLRSERQVSPHTLEAYRRDLGKVLAYC-----QKAQLSSWNDLDIQHLRSFTARQHQQGQ 56

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
             RSL R LS ++ F KYL +  I        +   K    LP+ L+  +   L+D  + 
Sbjct: 57  SSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGV- 115

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
               E  ++  R+ AIL LLY  GLR+SE   L    +      +++ GKG K R++P+ 
Sbjct: 116 ----EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVG 171

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              R+A+  +  L    L       +F   +GK L P   Q  ++       L  +   H
Sbjct: 172 SKARQALEIWLPLR--ALTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGER-ELGQNLHPH 228

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +YD  HP   +
Sbjct: 229 MLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAHPRAKR 284

Query: 324 K 324
           K
Sbjct: 285 K 285


>gi|282879077|ref|ZP_06287837.1| putative tyrosine recombinase XerD [Prevotella buccalis ATCC 35310]
 gi|281298811|gb|EFA91220.1| putative tyrosine recombinase XerD [Prevotella buccalis ATCC 35310]
          Length = 321

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 87/307 (28%), Positives = 156/307 (50%), Gaps = 16/307 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++ + L++ER  S  TL +Y+ D    L F     +++I+   +R     +++ F  +
Sbjct: 12  VKSYTRYLKLERNYSPNTLIAYQNDLGWLLSFCE---QQEISPLDVR---LEDLQHFAGQ 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                IG  S  R LSG++SF ++L       +     + + +    LP  L+ ++    
Sbjct: 66  LHEHDIGPTSQARILSGVRSFYRFLVLDGYIEQDPTELLESPRLGEHLPEVLSTEEV--- 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
             +++ ++   +K    RN AI+ +L+ CGLR+SE ++L   N+  D+  +R+ GKG+K 
Sbjct: 123 --DMIENSIDLSKPEGQRNKAIIEVLFSCGLRVSELVNLQLSNLYLDEGFIRVTGKGNKE 180

Query: 198 RIVPLLPSVRKAI-LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+ P   K + L + D     +    Q  +F   RG  L   +    +++  +  G+
Sbjct: 181 RLVPISPKAIKELNLWFLDRNLMKIKPGEQDYVFLNRRGAHLTRTMILIMLKRQAQEAGI 240

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HTLRHSFAT LL  G DLR+IQ +LGH  + TT+IYT++++      + E    
Sbjct: 241 QKTISPHTLRHSFATELLKGGADLRAIQVMLGHESIGTTEIYTHIDT----TTLREEILL 296

Query: 317 THPSITQ 323
            HP   +
Sbjct: 297 HHPRNAK 303


>gi|260767555|ref|ZP_05876491.1| tyrosine recombinase XerC [Vibrio furnissii CIP 102972]
 gi|260617455|gb|EEX42638.1| tyrosine recombinase XerC [Vibrio furnissii CIP 102972]
 gi|315178748|gb|ADT85662.1| site-specific tyrosine recombinase [Vibrio furnissii NCTC 11218]
          Length = 309

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 79/314 (25%), Positives = 152/314 (48%), Gaps = 16/314 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +  + + + L  E+GLS  T ++Y+         L       + +   +Q+    +R 
Sbjct: 12  LGRPLERFYEYLRSEKGLSLHTQRNYKQQLTTMAQHL-----NHMGLNQWQQVDAGWVRQ 66

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             SK     +   SL   LS ++SF  +L  R     +    +   +K   LP+ L+  +
Sbjct: 67  LASKGMRDGMKASSLATRLSSLRSFFDFLILRGELNANPAKGVSAPRKKRPLPKNLDVDE 126

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++       +E   +  R+ A++ L+YG GLR++E +++  +++      +R+ GK
Sbjct: 127 MAQLLEV------NEDDPLSIRDRAMMELMYGAGLRLAELVAINVRDVSLSAGEIRVIGK 180

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R  P     ++ + ++  +    L  + +  LF    G  ++    Q+ + +    
Sbjct: 181 GNKERKAPFAGQAKEWVGKWLKVRSSLLKGD-EPALFISQLGARISHRNVQKRMAEWGHK 239

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    + H LRHSFATH+L +  +LR++Q +LGH  +STTQIYT+++ ++    + E+
Sbjct: 240 QSVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQH----LAEV 295

Query: 314 YDQTHPSITQKDKK 327
           YDQ HP   +K K+
Sbjct: 296 YDQAHPRAHKKAKE 309


>gi|170734437|ref|YP_001766384.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia
           MC0-3]
 gi|169817679|gb|ACA92262.1| tyrosine recombinase XerC [Burkholderia cenocepacia MC0-3]
          Length = 306

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 88/321 (27%), Positives = 160/321 (49%), Gaps = 29/321 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                +L NL+  R LS+ TL++Y  +  +     A         + +  L+  ++R  +
Sbjct: 4   DPIAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAG--------RPLEALTAADMRGAV 55

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            +     +  RS+   LS  ++F ++  +R     + +  +R  K+  SLP+AL+   A+
Sbjct: 56  VRGHAAGLSARSISHRLSAWRAFYRWFAQRVEMPANPVAGVRAPKREKSLPKALSVDDAV 115

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-----------MDD 184
            L+D  L  T+        R+ AIL L Y  GLR++E + L  +                
Sbjct: 116 ALMDAPLAGTTE-----GIRDHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLA 170

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           ++ + ++GKG+K R VP+      A+  +  +    +  +   PLF  +RG  ++PGV +
Sbjct: 171 EAEVTVRGKGNKERKVPVGSKAIDALNAWLAVRGEFVKHDPH-PLFVSVRGNRMSPGVVR 229

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  ++ TQIYT+++ +
Sbjct: 230 ERVKRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQ 289

Query: 305 NGGDWMMEIYDQTHPSITQKD 325
           +    + +IYD  HP   ++D
Sbjct: 290 H----LAKIYDSAHPRAKKRD 306


>gi|89890506|ref|ZP_01202016.1| tyrosine recombinase XerD [Flavobacteria bacterium BBFL7]
 gi|89517421|gb|EAS20078.1| tyrosine recombinase XerD [Flavobacteria bacterium BBFL7]
          Length = 298

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 91/306 (29%), Positives = 156/306 (50%), Gaps = 16/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L    +ER L+  TL++Y  D  +   +L       I+I +  +++   +R +I +
Sbjct: 7   IKDFLTYSRLERSLADNTLKAYSRDLHKLNNWL---LANDISI-SPTEINSNILRDYIYE 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + +  RS  R+LS +K F  YL       ++ +  + + K    LP  L+ ++   L
Sbjct: 63  L-AKNVSSRSQARALSSLKVFFNYLILEDYRKDNPLELIESPKIGRKLPDTLSTQEIDAL 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++++   T H  +     N AIL  LYGCGLR+SE  +L   ++   +  +++ GKGDK 
Sbjct: 122 INSIDRSTPHGER-----NRAILETLYGCGLRVSELTTLKISDLFFQEGFIKVTGKGDKQ 176

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R +P+     K I  Y +     L +  Q    +F   RG  L   +    I++L+   G
Sbjct: 177 RFIPIGDFTIKVINLYINEIRPHLPIKPQHTDTVFLNRRGAGLTRAMIFHIIKELKVKAG 236

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + HT RHSFATHLL NG DLRSIQ +LGH  ++TT+IY +V+  +    + ++ +
Sbjct: 237 ITKKISPHTFRHSFATHLLENGADLRSIQMMLGHESITTTEIYMHVDRAH----LTKVME 292

Query: 316 QTHPSI 321
           + HP  
Sbjct: 293 KHHPRA 298


>gi|311109403|ref|YP_003982256.1| tyrosine recombinase XerC [Achromobacter xylosoxidans A8]
 gi|310764092|gb|ADP19541.1| tyrosine recombinase XerC [Achromobacter xylosoxidans A8]
          Length = 331

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 96/326 (29%), Positives = 159/326 (48%), Gaps = 27/326 (8%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L      WL++LE  R  S  TL  Y  +   FL  LA + +       + ++    IR 
Sbjct: 17  LPDAMSAWLRHLETNRRYSPHTLDGYRREL-HFLRELADHAK-----LPLDKIGNGHIRQ 70

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+++   Q  G RSL R+L+  + F ++         + +  +R  K    LP+AL+ +Q
Sbjct: 71  FVARLHAQGRGPRSLARTLAAWRGFYQWWAPAIELAGNPVAGVRAPKAPRGLPKALSVEQ 130

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM----------- 182
              L+D      +  T+    R+ A+L LLY  GLR+SE + L  +              
Sbjct: 131 TQALLDRAPAQVA--TEPAALRDQAMLELLYSSGLRLSELVGLDLRYERSGNYESRGWLS 188

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP----FDLNLNIQLPLFRGIRGKPL 238
            +++ + + GKG K R VP+  +  +A+ ++  + P    F         LF G RG+ +
Sbjct: 189 LEEAEVIVLGKGGKRRSVPVGQAALEALRKWIAVRPQLTPFTAQPEDAAALFLGARGRRI 248

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +P V Q  + ++ +  G+P     H LRHSFA+H+L +  DLR++Q +LGH  +STTQIY
Sbjct: 249 SPRVVQLQLARIAQQAGVPTHVHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQIY 308

Query: 299 TNVNSKNGGDWMMEIYDQTHPSITQK 324
           T ++ ++    +   YDQ HP   +K
Sbjct: 309 TRLDFQH----LARAYDQAHPRAGRK 330


>gi|83643202|ref|YP_431637.1| site-specific tyrosine recombinase XerC [Hahella chejuensis KCTC
           2396]
 gi|83631245|gb|ABC27212.1| tyrosine recombinase XerC [Hahella chejuensis KCTC 2396]
          Length = 301

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 93/314 (29%), Positives = 161/314 (51%), Gaps = 15/314 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L  + + ++  L  ER  S  T+ SY  D R+ + +      +   + + + L   ++R 
Sbjct: 3   LSTQVEAFIAYLHSERRYSVHTVSSYNRDLRRVVAYC-----DANGVASWKDLHTPQLRQ 57

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            +S+   + +G RSL R LS ++ F +YL + ++  E+    +R  K +  LP  ++  Q
Sbjct: 58  ALSEFHRRGLGSRSLHRLLSTVRRFYEYLLRERLVYENPANGVRAPKMTKRLPATMDVDQ 117

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           A  L+D     +  E + ++ R+ AI  L Y  G+R+SE   L   ++   +   R+ GK
Sbjct: 118 AKQLLD-----SPVEEEELEIRDQAIAELFYTSGIRLSELAGLDLAHLDLSEGLARVLGK 172

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R+VP+    RKA+ ++       L +  +  +F  +RG  L+    Q  +RQ  + 
Sbjct: 173 GGKERLVPVGGQARKALRDWLQAR-ASLAVAGEPAVFVSLRGGRLSRRSIQERLRQWAQK 231

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G       H  RHS A+HLL + GDLR++Q +LGH  +STTQIYT++N ++    + E+
Sbjct: 232 KGFSGRLYPHLFRHSCASHLLESSGDLRAVQELLGHADISTTQIYTHLNFQH----LAEV 287

Query: 314 YDQTHPSITQKDKK 327
           YD+ HP   ++ K 
Sbjct: 288 YDKAHPRARKRKKD 301


>gi|88813548|ref|ZP_01128781.1| tyrosine recombinase [Nitrococcus mobilis Nb-231]
 gi|88789177|gb|EAR20311.1| tyrosine recombinase [Nitrococcus mobilis Nb-231]
          Length = 313

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 91/321 (28%), Positives = 144/321 (44%), Gaps = 21/321 (6%)

Query: 6   LPEIVSFELLKERQN-----WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           +PE      L   +      +L  L +ERGLS  TL +Y  D   +  +L  +       
Sbjct: 7   MPERAECNSLAADEERLIGGFLDTLWMERGLSAHTLSAYRSDLVAYARWLERHG------ 60

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             + +       A++++R    +  R+  R LS ++ F +   +     E     + + K
Sbjct: 61  TGLLRAGRDGPTAYLAERVRSGVRPRTTARLLSTLRCFYRLQLRDGRLAEDPTAQLDSPK 120

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LP  L+E++   L+             I  R+  +L + Y  GLR+SE +SL    
Sbjct: 121 LDRPLPATLSEQEVEELL-----AAPDCQNPIGLRDRTMLEVAYATGLRVSELVSLRLGQ 175

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLN 239
           +   Q   RI GK DK R+VPL    +  + +Y        L       LF   RG+ + 
Sbjct: 176 LNLRQGMARIIGKADKERLVPLGDEAQAWLEDYLQDARSVLLTHPSASVLFITRRGEAMT 235

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
              F   I+   +  G+    + HTLRHSFATHLL++G DLR +Q +LGH  L+TTQIYT
Sbjct: 236 RQAFWYRIKYYAQVAGISKPLSPHTLRHSFATHLLNHGADLRVVQLLLGHSDLTTTQIYT 295

Query: 300 NVNSKNGGDWMMEIYDQTHPS 320
           +V  +     + E++ + HP 
Sbjct: 296 HVARQR----LQELHARHHPR 312


>gi|332290936|ref|YP_004429545.1| tyrosine recombinase XerD [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169022|gb|AEE18277.1| tyrosine recombinase XerD [Krokinobacter diaphorus 4H-3-7-5]
          Length = 300

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 94/303 (31%), Positives = 149/303 (49%), Gaps = 16/303 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N+   L IERGLS+ T+ +Y  D ++    L         I     ++  +I+ FI    
Sbjct: 9   NYKSYLRIERGLSENTIDNYARDLKKLTRHLEQLDSAPDPIT----ITKDDIQDFI-YTI 63

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +++  RS  R +SG+K F  YL       ++ +  + + +    LP  L E++   L+ 
Sbjct: 64  AKEVQARSQARIISGLKGFFNYLIFEDYRKDNPLDLIESPRLGRKLPDTLAEEEIDALIT 123

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            + L      +     N A+L  LY CGLR++E +SL   ++  ++  + + GKGDK R 
Sbjct: 124 AIDLSNPQGER-----NRAMLETLYSCGLRVTELISLKLSDLYFEEGFINVIGKGDKQRF 178

Query: 200 VPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           VP+    +K I  Y +      D+       LF   RG+ L   +    I+ L    G+ 
Sbjct: 179 VPISEHTQKYINIYRNEIRTHTDVKPEYVDILFLNRRGRQLTRAMIFTIIKDLAVKAGIK 238

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            S + HT RHSFATHLL NG DLRSIQ +LGH  ++TT+IY +V+  +    +  + +Q 
Sbjct: 239 KSISPHTFRHSFATHLLQNGADLRSIQQMLGHESITTTEIYMHVDRSD----LARVMEQY 294

Query: 318 HPS 320
           HP 
Sbjct: 295 HPR 297


>gi|291286773|ref|YP_003503589.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290883933|gb|ADD67633.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 312

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 88/306 (28%), Positives = 155/306 (50%), Gaps = 16/306 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ ++ E+G S  T+++Y  D     ++L     E   I  I+   +  +R F++    
Sbjct: 19  FLKFMQQEKGASDHTIKNYSRDLADLCMYL-----EDSAIDDIQDADFFTLRGFVAMLFD 73

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   +++R ++ +KSF  +++K+  T ++    ++  KK     +  N    + L+D 
Sbjct: 74  KGLAKSTIERKIACLKSFFAFMQKKNHTDDNPARMLKFPKKEQKAFKVFNIDSIIALLD- 132

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                  + K    R++ I  L+YG G+R+SE + L   +I      + ++GKG K RIV
Sbjct: 133 ----APDKDKPAGMRDALIQELMYGTGVRVSELVGLNLSDIDFGGMRILVRGKGKKERIV 188

Query: 201 PLLPSVRKAILEYYDLCPFDLN--LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           P+     + I +Y D+     N  L     +F    G  L     +R + +  +  GLP+
Sbjct: 189 PIADMHIEMINDYLDVKMDICNGYLPDNEAIFINKFGSRLTDRSVRRIVEKYLKIAGLPM 248

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H+ RHS+ATHLL  G DLR+IQS+LGH  L+TTQ YT++N       ++ +YD TH
Sbjct: 249 DFSPHSFRHSYATHLLEGGADLRTIQSLLGHESLTTTQKYTHLN----LTELLRVYDATH 304

Query: 319 PSITQK 324
           P  + K
Sbjct: 305 PFASGK 310


>gi|29376202|ref|NP_815356.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|227518833|ref|ZP_03948882.1| site-specific recombinase XerD [Enterococcus faecalis TX0104]
 gi|227553450|ref|ZP_03983499.1| site-specific recombinase XerD [Enterococcus faecalis HH22]
 gi|229549931|ref|ZP_04438656.1| site-specific recombinase XerD [Enterococcus faecalis ATCC 29200]
 gi|255972714|ref|ZP_05423300.1| phage integrase [Enterococcus faecalis T1]
 gi|256619143|ref|ZP_05475989.1| integrase [Enterococcus faecalis ATCC 4200]
 gi|256762579|ref|ZP_05503159.1| phage integrase [Enterococcus faecalis T3]
 gi|256853205|ref|ZP_05558575.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|256961848|ref|ZP_05566019.1| phage integrase [Enterococcus faecalis Merz96]
 gi|257082471|ref|ZP_05576832.1| phage integrase [Enterococcus faecalis E1Sol]
 gi|257086664|ref|ZP_05581025.1| phage integrase [Enterococcus faecalis D6]
 gi|257416173|ref|ZP_05593167.1| integrase [Enterococcus faecalis AR01/DG]
 gi|257419375|ref|ZP_05596369.1| phage integrase [Enterococcus faecalis T11]
 gi|293382913|ref|ZP_06628831.1| tyrosine recombinase XerC [Enterococcus faecalis R712]
 gi|293389598|ref|ZP_06634055.1| tyrosine recombinase XerC [Enterococcus faecalis S613]
 gi|300860343|ref|ZP_07106430.1| tyrosine recombinase XerC [Enterococcus faecalis TUSoD Ef11]
 gi|307274878|ref|ZP_07556041.1| tyrosine recombinase XerC [Enterococcus faecalis TX2134]
 gi|307291916|ref|ZP_07571785.1| tyrosine recombinase XerC [Enterococcus faecalis TX0411]
 gi|312907617|ref|ZP_07766608.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 512]
 gi|312910234|ref|ZP_07769081.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 516]
 gi|29343665|gb|AAO81426.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
 gi|227073746|gb|EEI11709.1| site-specific recombinase XerD [Enterococcus faecalis TX0104]
 gi|227177426|gb|EEI58398.1| site-specific recombinase XerD [Enterococcus faecalis HH22]
 gi|229304944|gb|EEN70940.1| site-specific recombinase XerD [Enterococcus faecalis ATCC 29200]
 gi|255963732|gb|EET96208.1| phage integrase [Enterococcus faecalis T1]
 gi|256598670|gb|EEU17846.1| integrase [Enterococcus faecalis ATCC 4200]
 gi|256683830|gb|EEU23525.1| phage integrase [Enterococcus faecalis T3]
 gi|256711664|gb|EEU26702.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|256952344|gb|EEU68976.1| phage integrase [Enterococcus faecalis Merz96]
 gi|256990501|gb|EEU77803.1| phage integrase [Enterococcus faecalis E1Sol]
 gi|256994694|gb|EEU81996.1| phage integrase [Enterococcus faecalis D6]
 gi|257158001|gb|EEU87961.1| integrase [Enterococcus faecalis ARO1/DG]
 gi|257161203|gb|EEU91163.1| phage integrase [Enterococcus faecalis T11]
 gi|291079578|gb|EFE16942.1| tyrosine recombinase XerC [Enterococcus faecalis R712]
 gi|291081215|gb|EFE18178.1| tyrosine recombinase XerC [Enterococcus faecalis S613]
 gi|295113045|emb|CBL31682.1| tyrosine recombinase XerC subunit [Enterococcus sp. 7L76]
 gi|300849382|gb|EFK77132.1| tyrosine recombinase XerC [Enterococcus faecalis TUSoD Ef11]
 gi|306496914|gb|EFM66462.1| tyrosine recombinase XerC [Enterococcus faecalis TX0411]
 gi|306508326|gb|EFM77433.1| tyrosine recombinase XerC [Enterococcus faecalis TX2134]
 gi|310626645|gb|EFQ09928.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 512]
 gi|311289507|gb|EFQ68063.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 516]
 gi|315027186|gb|EFT39118.1| tyrosine recombinase XerC [Enterococcus faecalis TX2137]
 gi|315029303|gb|EFT41235.1| tyrosine recombinase XerC [Enterococcus faecalis TX4000]
 gi|315034051|gb|EFT45983.1| tyrosine recombinase XerC [Enterococcus faecalis TX0017]
 gi|315145127|gb|EFT89143.1| tyrosine recombinase XerC [Enterococcus faecalis TX2141]
 gi|315147344|gb|EFT91360.1| tyrosine recombinase XerC [Enterococcus faecalis TX4244]
 gi|315150456|gb|EFT94472.1| tyrosine recombinase XerC [Enterococcus faecalis TX0012]
 gi|315158157|gb|EFU02174.1| tyrosine recombinase XerC [Enterococcus faecalis TX0312]
 gi|315160539|gb|EFU04556.1| tyrosine recombinase XerC [Enterococcus faecalis TX0645]
 gi|315169812|gb|EFU13829.1| tyrosine recombinase XerC [Enterococcus faecalis TX1342]
 gi|315172224|gb|EFU16241.1| tyrosine recombinase XerC [Enterococcus faecalis TX1346]
 gi|315575784|gb|EFU87975.1| tyrosine recombinase XerC [Enterococcus faecalis TX0309B]
 gi|315580436|gb|EFU92627.1| tyrosine recombinase XerC [Enterococcus faecalis TX0309A]
 gi|323480809|gb|ADX80248.1| tyrosine recombinase XerC [Enterococcus faecalis 62]
 gi|327535213|gb|AEA94047.1| tyrosine recombinase XerC [Enterococcus faecalis OG1RF]
          Length = 299

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 98/325 (30%), Positives = 163/325 (50%), Gaps = 30/325 (9%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK-IT 59
           ME  N PE+           + + L +ERG S+ T ++Y+ D + F  FL     +  +T
Sbjct: 1   MEEKNWPEL-----------FARYLIVERGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLT 49

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           ++ +      ++RA++S+   Q+    S+ R ++ ++SF ++L K +   E+    +   
Sbjct: 50  VEHL------DVRAYLSELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMK 103

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           KK   LPR   EK+   L +     ++   + +D RN A+L +LYG G+R+SE  +LT  
Sbjct: 104 KKQLRLPRFFYEKEMDALFE-----SAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVD 158

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGK 236
            +    S L + GKG+K R VP     + A+ +Y +     L    Q     +F    G+
Sbjct: 159 AVDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGE 218

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            + P   +  + QL +   L      H LRH+FATHLL+NG D+R++Q +LGH  LSTTQ
Sbjct: 219 QITPTGIEYVLNQLIKKSSLNAEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQ 278

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSI 321
           IY +V  ++    + + Y   HP  
Sbjct: 279 IYAHVTKES----LQKNYRTFHPRA 299


>gi|16272618|ref|NP_438836.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae Rd
           KW20]
 gi|260581486|ref|ZP_05849296.1| tyrosine recombinase XerC [Haemophilus influenzae RdAW]
 gi|260582981|ref|ZP_05850764.1| tyrosine recombinase XerC [Haemophilus influenzae NT127]
 gi|1175024|sp|P44818|XERC_HAEIN RecName: Full=Tyrosine recombinase xerC
 gi|1573676|gb|AAC22336.1| integrase/recombinase (xerC) [Haemophilus influenzae Rd KW20]
 gi|260091846|gb|EEW75799.1| tyrosine recombinase XerC [Haemophilus influenzae RdAW]
 gi|260093965|gb|EEW77870.1| tyrosine recombinase XerC [Haemophilus influenzae NT127]
          Length = 295

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 92/312 (29%), Positives = 152/312 (48%), Gaps = 17/312 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +L     +   L IER +S  T+ +Y+      +  LA     +  I +  Q++ + +R 
Sbjct: 1   MLTALNRYWDYLRIERQMSPHTITNYQHQLDATIKILA-----QQDIHSWTQVTPSVVRF 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            +++ + Q + ++SL   LS ++ FL +L ++     +    +   K+   LP+ ++ +Q
Sbjct: 56  ILAESKKQGLKEKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQ 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+       +   + ID R+ AIL L+Y  GLR+SE   L   +I      +R+ GK
Sbjct: 116 VQQLL------ANDSKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R+VP       AI E+  +    L       LF    G  ++    Q+ +      
Sbjct: 170 GNKERVVPFGRYASHAIQEWLKVR--ALFNPKDEALFVSQLGNRISHRAIQKRLETWGIR 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL      H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    + E+
Sbjct: 228 QGLNSHLNPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEV 283

Query: 314 YDQTHPSITQKD 325
           YDQ HP   +K 
Sbjct: 284 YDQAHPRAKRKK 295


>gi|300858389|ref|YP_003783372.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41]
 gi|300685843|gb|ADK28765.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41]
 gi|302206103|gb|ADL10445.1| site-specific tyrosine recombinase XerD [Corynebacterium
           pseudotuberculosis C231]
 gi|302330656|gb|ADL20850.1| site-specific tyrosine recombinase XerD [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276340|gb|ADO26239.1| site-specific tyrosine recombinase XerD [Corynebacterium
           pseudotuberculosis I19]
          Length = 310

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 91/313 (29%), Positives = 149/313 (47%), Gaps = 21/313 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
             WL +L IERG+S  TL +Y  D +++L ++     E   I  +  L+  ++ +++   
Sbjct: 9   DRWLTHLAIERGVSANTLSNYRRDVQRYLDWI-----ESRGIDDLGILTSRDVESYVLDL 63

Query: 79  RT-------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           R        Q +   S  R+L   +   K+     + +      +        LP  L+ 
Sbjct: 64  RRGDPDTGKQPLAASSAGRALVVARGLHKFAMMEGLISVDVAGEVSPPSTGRHLPDTLSV 123

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTL 188
            +   L+    + T +     D R++A++ LLYG G RISE ++LT   +    + +  L
Sbjct: 124 TEVEELISA--IPTDNIATPEDLRDAALIELLYGTGARISEIMNLTVDEVTVLEETEGML 181

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKGDK RIVP+    +KA+  Y       L       LF   RG  L+     + ++
Sbjct: 182 RIVGKGDKHRIVPVGSMAQKALRRYLVRARPQLTKGKSHALFLNKRGGALSRQSAWQILK 241

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
              R  G+    + HTLRHS+A+HLL  G D+R +Q +LGH  ++TTQIYT++      D
Sbjct: 242 SSARRAGVQKDISPHTLRHSYASHLLEGGADVRVVQELLGHSSVTTTQIYTHIT----AD 297

Query: 309 WMMEIYDQTHPSI 321
            +  ++ Q+HP  
Sbjct: 298 NLRIVWSQSHPRA 310


>gi|281421506|ref|ZP_06252505.1| integrase/recombinase XerD [Prevotella copri DSM 18205]
 gi|281404578|gb|EFB35258.1| integrase/recombinase XerD [Prevotella copri DSM 18205]
          Length = 318

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 89/312 (28%), Positives = 152/312 (48%), Gaps = 16/312 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +N+++ L++ R  SK TL +Y  D    L +             + ++   ++  F + 
Sbjct: 6   IKNYMRYLKLGRNFSKNTLDAYYHDLNFLLEYADKNN------LVLTEMKLEDLENFSAS 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + +  RS  R LSGI+SF +YL       +     + + +    LP  L+ ++    
Sbjct: 60  LHDRGVSARSQARILSGIRSFYRYLVLDDYIKDDPTELLVSPQIGKHLPEYLSVEEV--- 116

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
             ++L       KW   RN AI+ +L+ CGLR+SE ++L   ++ +++  +R+ GKG+K 
Sbjct: 117 --DMLEAAIDLEKWEGQRNKAIIEILFSCGLRVSELVNLKKSDVFEEEKFIRVIGKGNKE 174

Query: 198 RIVPLLPSVRKAI-LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVP+     K I L Y D     +    +  +F   RG  L   +    I+      G+
Sbjct: 175 RIVPISGKALKEINLWYIDRNLMTIKPGEEDYVFLNRRGAHLTRNMILIMIKNAAYDAGI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HTLRHSFAT LL  G DLR IQ++LGH  + TT+IYT++ + +    ++E    
Sbjct: 235 KKTISPHTLRHSFATALLKGGADLRVIQALLGHEDIGTTEIYTHLETSDLRRAILE---- 290

Query: 317 THPSITQKDKKN 328
            HP   +  ++N
Sbjct: 291 HHPRNIKYSEEN 302


>gi|309751724|gb|ADO81708.1| Site-specific tyrosine recombinase XerC [Haemophilus influenzae
           R2866]
          Length = 295

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 92/312 (29%), Positives = 152/312 (48%), Gaps = 17/312 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +L     +   L IER +S  T+ +Y+      +  LA     +  I +  Q++ + +R 
Sbjct: 1   MLTALNRYWDYLRIERQMSPHTITNYQHQLDATIKILA-----QQDIHSWTQVTPSVVRF 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            +++ + Q + ++SL   LS ++ FL +L ++     +    +   K+   LP+ ++ +Q
Sbjct: 56  ILAESKKQGLKEKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQ 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+       +   + ID R+ AIL L+Y  GLR+SE   L   +I      +R+ GK
Sbjct: 116 VQQLL------ANDSKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R+VP       AI E+  +    L       LF    G  ++    Q+ +      
Sbjct: 170 GNKERVVPFGRYASHAIQEWLKVR--ALFNPKGEALFVSQLGNRISHRAIQKRLETWGIR 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL      H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    + E+
Sbjct: 228 QGLNSHLNPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEV 283

Query: 314 YDQTHPSITQKD 325
           YDQ HP   +K 
Sbjct: 284 YDQAHPRAKRKK 295


>gi|330984816|gb|EGH82919.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 290

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 91/301 (30%), Positives = 146/301 (48%), Gaps = 17/301 (5%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           +L  ER +S  TL++Y  D  + L +      +K  + +   L    +R+F +++  Q  
Sbjct: 2   HLRSERQVSPHTLEAYRRDLGKVLAYC-----QKAQLSSWNDLDIQHLRSFTARQHQQGQ 56

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
             RSL R LS ++ F KYL +  I        M   K    LP+ L+  +   L+D  + 
Sbjct: 57  SSRSLARMLSAVRGFYKYLNREGICQHDPANGMSPPKGERRLPKTLDTDRTAQLLDGGV- 115

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
               E  ++  R+ AIL LLY  GLR+SE   L    +      +++ GKG K R++P+ 
Sbjct: 116 ----EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVG 171

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              R+A+  +  L    L       +F   +GK L P   Q  ++       L  +   H
Sbjct: 172 SKARQALEIWLPLR--ALTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGER-ELGQNLHPH 228

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +YD  HP   +
Sbjct: 229 MLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAHPRAKR 284

Query: 324 K 324
           K
Sbjct: 285 K 285


>gi|255011423|ref|ZP_05283549.1| putative tyrosine recombinase [Bacteroides fragilis 3_1_12]
 gi|313149239|ref|ZP_07811432.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313138006|gb|EFR55366.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 319

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 94/314 (29%), Positives = 156/314 (49%), Gaps = 18/314 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + Q L++E+ LSK TL +Y  D  + L FL+           I ++S  +++ F + 
Sbjct: 17  IKKYQQYLKLEKSLSKNTLDAYLTDLDKLLNFLSDEG------VDILEISLKDLQRFAAG 70

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I  RS  R +SGIKSF  +L             +   K    LP  L  ++   +
Sbjct: 71  LHDIGIHARSQARIISGIKSFFHFLIMADYIEADPSELLEGPKIGFKLPEVLTVEEIDHI 130

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +      T   +K    RN AIL  LY CGLR+SE  +L   ++  ++  ++++GKG K 
Sbjct: 131 I-----STVDLSKNEGQRNRAILETLYSCGLRVSELTNLKLSDLYFNEGFIKVEGKGSKQ 185

Query: 198 RIVPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+ P   + I  Y+      ++  + +  LF   RG  L+  +    I++L    G+
Sbjct: 186 RLVPISPRAIQEIKYYFMDRNRINIKKDYEDYLFLSRRGTHLSRIMIFHLIKELADMAGI 245

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HT RHSFATHLL  G +LR+IQ +LGH  +STT+IYT+++       ++E    
Sbjct: 246 TKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESISTTEIYTHIDRNMLRSEIIE---- 301

Query: 317 THPSITQ--KDKKN 328
            HP   +  ++K++
Sbjct: 302 HHPRNIKYRQEKRH 315


>gi|258514510|ref|YP_003190732.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257778215|gb|ACV62109.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 301

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 155/305 (50%), Gaps = 11/305 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             N++  L++++  S  T++SY+ D    + F +    +K        +S+  +R ++++
Sbjct: 5   LDNFIIYLQLQKNASPKTVESYQKDLFDGIDFFSAALNKKDNELLPMDVSHNLMRRYLAQ 64

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            + + +   ++ R L+  +SF KYL +     ++++  +   K +  LP  L  +Q   L
Sbjct: 65  MQQKGLARSTVARRLASWRSFYKYLCREDYLQQNHLAGVATPKGNGKLPLFLETEQLKLL 124

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++         T  +  R++A+L +LY  GLR+SEA++L    +  D   L+  GKG K 
Sbjct: 125 LE-----APDSTTSLGQRDAALLEILYAAGLRVSEAVNLDLSALDFDSRMLKAYGKGSKE 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R++P       A+  Y       L+     +  +F    G  L+    ++ I +     G
Sbjct: 180 RMIPFGTYAAAALKLYIKDGRHKLSKISQSEQAVFLNNSGTRLSDRGIRKIIDKYIEKTG 239

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L  + + HTLRH+FATHLL NG DLRS+Q +LGH RLSTTQIYT+V+ +     +  ++ 
Sbjct: 240 LKSAISPHTLRHTFATHLLDNGADLRSVQELLGHVRLSTTQIYTHVSVE----KLKGVHK 295

Query: 316 QTHPS 320
           + HP 
Sbjct: 296 KYHPR 300


>gi|157829635|pdb|1A0P|A Chain A, Site-Specific Recombinase, Xerd
          Length = 290

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 88/295 (29%), Positives = 143/295 (48%), Gaps = 13/295 (4%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L  L +E+ L++ TL +Y  D    + +L           T+      +++A 
Sbjct: 3   LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG------LTLATAQSDDLQAL 56

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R        S  R LS ++   +YL + K   +    ++ + K    LP+ L+E Q 
Sbjct: 57  LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQV 116

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+   L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG
Sbjct: 117 ERLLQAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 171

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y     P+ LN      LF   R + +    F   I+     
Sbjct: 172 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 231

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++   
Sbjct: 232 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 286


>gi|237809853|ref|YP_002894293.1| tyrosine recombinase XerC [Tolumonas auensis DSM 9187]
 gi|237502114|gb|ACQ94707.1| tyrosine recombinase XerC [Tolumonas auensis DSM 9187]
          Length = 309

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 92/319 (28%), Positives = 157/319 (49%), Gaps = 16/319 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S  L      +L+ L +ER LS  TL +Y+   +  + +L         IQ   +L+  
Sbjct: 1   MSESLSSVLHTYLEYLRVERQLSAHTLSNYQRHLQALIEWLQEKQ-----IQDWGELNNP 55

Query: 70  EIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            +R +    R  K    R++   +S ++SF  +L  R I   +    +   K    LP+ 
Sbjct: 56  LVRQWAHTLRKHKDTSPRTISTKMSALRSFADWLVIRGILAANPARGVALPKLGRPLPKN 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+  Q      + LL+ + E+  +  R+ AI+ L Y  G+R+SE ++L   ++      +
Sbjct: 116 LDVDQV-----HQLLNITDESDPLVVRDRAIMELFYSTGMRLSELVALDLNDLDMTSRQV 170

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R+ GKG+K RI+P+     + + ++       L L  +  LF   R + +   + +  I 
Sbjct: 171 RVIGKGNKERILPVGRLALEWLEKWLRTRTAFL-LEGETALFLSSRKRRITARMVEIRIE 229

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           Q  +   L      H LRHSFATH+L + GDLR++Q +LGH  L+TTQIYT+++ ++   
Sbjct: 230 QWGQKQTLNSHVHPHKLRHSFATHMLESSGDLRAVQELLGHANLATTQIYTHLDFQH--- 286

Query: 309 WMMEIYDQTHPSITQKDKK 327
            +  +YDQTHP   +K  K
Sbjct: 287 -LAAVYDQTHPRSKRKKLK 304


>gi|330952167|gb|EGH52427.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae Cit
           7]
          Length = 299

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 89/311 (28%), Positives = 150/311 (48%), Gaps = 17/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +    +  +L  ER +S  TL++Y  D  + L +      +K  + +   L    +R+
Sbjct: 1   MEQHLDAYCMHLRSERQVSPHTLEAYRRDLGKVLAYC-----QKARLSSWSDLDIQHLRS 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F +++  Q    RSL R LS ++ F KYL +  I        +   K    LP+ L+  +
Sbjct: 56  FTARQHQQGQSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDR 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D  +     E  ++  R+ AIL LLY  GLR+SE   L    +      +++ GK
Sbjct: 116 TAQLLDGGV-----EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R++P+    R+A+  +  L    L       +F  ++G+ L P   Q  ++     
Sbjct: 171 GSKTRVLPVGSKARQALEVWLPLR--ALTHPQDDAVFVSLQGRRLGPRAIQVRLKAAGER 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L  +   H LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +
Sbjct: 229 -ELGQNLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATV 283

Query: 314 YDQTHPSITQK 324
           YD  HP   +K
Sbjct: 284 YDSAHPRAKRK 294


>gi|256587797|gb|ACU98929.1| integrase [Propionibacterium jensenii]
          Length = 305

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 88/313 (28%), Positives = 146/313 (46%), Gaps = 11/313 (3%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +   L    +++  +L  +   S  T+ +Y  D        A        +  + ++  +
Sbjct: 3   LPAALTVPLEDFCVHLRADLRRSPRTVTAYRTDLESLFDHAADN-----GVTRLAEIDVS 57

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R++++  R       +L+R  +  + F ++     +        ++  K    LPR L
Sbjct: 58  ALRSWLADGRGAAEAPATLQRHWASARVFFRWACAEGLIGVDPAARLKAAKVPRRLPRTL 117

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              QA  L+D+ +   S +     AR++AIL +LYG G+R+ E   L   ++   + TLR
Sbjct: 118 GVDQARRLLDDAVASASTDDSPQGARDAAILEVLYGSGIRVGELCGLDLSSLDRARDTLR 177

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR- 248
           + GKG K R VPL     +AI  +          +    LF G RG  ++P V +R +  
Sbjct: 178 VLGKGSKERTVPLGDPGWRAIDGWLSRRSEWQTASSGQALFLGARGARIDPRVVRRMVHQ 237

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            LR   G P     H LRH+ ATHLL  G DLR++Q ILGH  L+TTQIYT+V+++    
Sbjct: 238 HLRSEPGFP-DLGPHGLRHAMATHLLEGGADLRTVQEILGHESLATTQIYTHVSTER--- 293

Query: 309 WMMEIYDQTHPSI 321
            +   ++Q HP  
Sbjct: 294 -LRRAFNQAHPRA 305


>gi|254501286|ref|ZP_05113437.1| tyrosine recombinase XerD [Labrenzia alexandrii DFL-11]
 gi|222437357|gb|EEE44036.1| tyrosine recombinase XerD [Labrenzia alexandrii DFL-11]
          Length = 307

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 93/314 (29%), Positives = 143/314 (45%), Gaps = 19/314 (6%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           + +N+L+ L  ERG ++ TL  Y  D   F  FL            + + +   I  ++S
Sbjct: 6   DLENFLEMLAAERGAAENTLAGYRRDLEDFSDFLGR--------TKLAEANSDHISGYMS 57

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               +   + S  R LS +K F K+L       +     +   KK  SLP+ L+  +   
Sbjct: 58  DLTRRGFAETSQARRLSALKQFYKFLYSEGSRQDDPTRTLSAPKKRGSLPKVLSMDEVDR 117

Query: 137 LVDNVLLHTSHETKWIDARNSA-----ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           L++     T    K   A   A     ++ +LY  GLR+SE ++L     + D   + I+
Sbjct: 118 LIETARQQTKVSHKSAAAALRAQRMYTLIEVLYATGLRVSELVALPVTAALRDARLIEIK 177

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQL 250
           GKG K R+VPL  + + A+  Y  L   +        LF    G   L    F R ++ L
Sbjct: 178 GKGGKERLVPLSHAAQSAMKMYVGLRSAEGAYENSPWLFPSHGGSGHLTRQHFGRDLKDL 237

Query: 251 RRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
               GL     + H LRH+FA+HLL NG DLR +Q +LGH  +STTQIYT+V  +     
Sbjct: 238 AIAAGLDASKVSPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDER---- 293

Query: 310 MMEIYDQTHPSITQ 323
           + E+ +  HP   +
Sbjct: 294 LRELVETAHPLARK 307


>gi|307289187|ref|ZP_07569143.1| tyrosine recombinase XerC [Enterococcus faecalis TX0109]
 gi|306499896|gb|EFM69257.1| tyrosine recombinase XerC [Enterococcus faecalis TX0109]
 gi|315164096|gb|EFU08113.1| tyrosine recombinase XerC [Enterococcus faecalis TX1302]
          Length = 299

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 98/325 (30%), Positives = 163/325 (50%), Gaps = 30/325 (9%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK-IT 59
           ME  N PE+           + + L +ERG S+ T ++Y+ D + F  FL     +  +T
Sbjct: 1   MEEKNWPEL-----------FARYLIVERGYSEKTKKAYQEDIQHFFSFLKTSGSDNYLT 49

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           ++ +      ++RA++S+   Q+    S+ R ++ ++SF ++L K +   E+    +   
Sbjct: 50  VEHL------DVRAYLSELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMK 103

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           KK   LPR   EK+   L +     ++   + +D RN A+L +LYG G+R+SE  +LT  
Sbjct: 104 KKQLRLPRFFYEKEMDALFE-----SAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVD 158

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGK 236
            +    S L + GKG+K R VP     + A+ +Y +     L    Q     +F    G+
Sbjct: 159 AVDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGE 218

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            + P   +  + QL +   L      H LRH+FATHLL+NG D+R++Q +LGH  LSTTQ
Sbjct: 219 QITPTGIEYVLNQLIKKSSLNAEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQ 278

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSI 321
           IY +V  ++    + + Y   HP  
Sbjct: 279 IYAHVTKES----LQKNYRTFHPRA 299


>gi|308235900|ref|ZP_07666637.1| tyrosine recombinase XerD [Gardnerella vaginalis ATCC 14018]
 gi|311115004|ref|YP_003986225.1| integrase/recombinase [Gardnerella vaginalis ATCC 14019]
 gi|310946498|gb|ADP39202.1| integrase/recombinase [Gardnerella vaginalis ATCC 14019]
          Length = 335

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 90/343 (26%), Positives = 157/343 (45%), Gaps = 38/343 (11%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E        + Q +L ++ +ERGLS  T++SYE D  ++  +L     E   I  + +++
Sbjct: 3   ESQQSPFSPKIQQFLNHISVERGLSPKTVESYESDLTKYTNWLR----EARKINDVNEIT 58

Query: 68  YTEIRAFI-----SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
             +I  ++         +Q +G R++ R ++ I  + K++             ++  K++
Sbjct: 59  QLDIEEYVRAMSSQAMSSQNLGPRTIARRIASIHEWNKFMLSNAQIASDPSAEVKAPKQA 118

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             LP  L+  +   ++D         T  +  R+ A++  LY  G R+SEA+ L  ++I 
Sbjct: 119 EHLPDVLSISEVERVIDA--AGGFGSTDAVSLRDRALVEFLYATGARVSEAVGLKFEDID 176

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ---------------- 226
             +S +R+ GKG K R+VP+     +A+ +Y       L    Q                
Sbjct: 177 LTESVVRLSGKGQKQRLVPIGKCAVRALRDYLANARPILASRAQKSPATAKSRLKSPLNS 236

Query: 227 -------LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
                    +F   RGK L+       I +  +   +      HTLRHSFATHL+S G D
Sbjct: 237 SSKSANTHVIFLNKRGKSLSRQSAWEAISRAGKMAKIGKELHPHTLRHSFATHLISGGAD 296

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           +R++Q +LGH  ++TTQIYT+++     D +ME Y  +HP   
Sbjct: 297 VRTVQELLGHASVTTTQIYTHISP----DALMEAYVMSHPRAR 335


>gi|145631901|ref|ZP_01787657.1| tyrosine recombinase [Haemophilus influenzae R3021]
 gi|148826672|ref|YP_001291425.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           PittEE]
 gi|229847208|ref|ZP_04467312.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           7P49H1]
 gi|166918886|sp|A5UE41|XERC_HAEIE RecName: Full=Tyrosine recombinase xerC
 gi|144982462|gb|EDJ90028.1| tyrosine recombinase [Haemophilus influenzae R3021]
 gi|148716832|gb|ABQ99042.1| tyrosine recombinase [Haemophilus influenzae PittEE]
 gi|229809884|gb|EEP45606.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           7P49H1]
 gi|309973815|gb|ADO97016.1| Site-specific tyrosine recombinase XerC [Haemophilus influenzae
           R2846]
          Length = 295

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 92/312 (29%), Positives = 151/312 (48%), Gaps = 17/312 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +L     +   L IER +S  T+ +Y+      +  LA     +  I    Q++ + +R 
Sbjct: 1   MLTALNRYWDYLRIERQMSPHTITNYQHQLDATIKILA-----QQDIHAWTQVTPSVVRF 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            +++ + Q + ++SL   LS ++ FL +L ++     +    +   K+   LP+ ++ +Q
Sbjct: 56  ILAESKKQGLKEKSLALRLSALRRFLSFLVQQGELKVNPTTGISAPKQGKHLPKNMDGEQ 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+       +   + ID R+ AIL L+Y  GLR+SE   L   +I      +R+ GK
Sbjct: 116 VQQLL------ANDSKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R+VP       AI E+  +    L       LF    G  ++    Q+ +      
Sbjct: 170 GNKERVVPFGRYASHAIQEWLKVR--ALFNPKDEALFVSQLGNRISHRAIQKRLETWGIR 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL      H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    + E+
Sbjct: 228 QGLNSHLNPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEV 283

Query: 314 YDQTHPSITQKD 325
           YDQ HP   +K 
Sbjct: 284 YDQAHPRAKRKK 295


>gi|257482612|ref|ZP_05636653.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 290

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 90/301 (29%), Positives = 146/301 (48%), Gaps = 17/301 (5%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           +L  ER +S  TL++Y  D  + L +      +K  + +   L    +R+F +++  Q  
Sbjct: 2   HLRSERQVSPHTLEAYRRDLGKVLAYC-----QKAQLSSWNDLDIQHLRSFTARQHQQGQ 56

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
             RSL R LS ++ F KYL +  I        +   K    LP+ L+  +   L+D  + 
Sbjct: 57  SSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGDRRLPKTLDTDRTAQLLDGGV- 115

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
               E  ++  R+ AIL LLY  GLR+SE   L    +      +++ GKG K R++P+ 
Sbjct: 116 ----EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVG 171

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              R+A+  +  L    L       +F   +GK L P   Q  ++       L  +   H
Sbjct: 172 SKARQALEIWLPLR--ALTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGER-ELGQNLHPH 228

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +YD  HP   +
Sbjct: 229 MLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAHPRAKR 284

Query: 324 K 324
           K
Sbjct: 285 K 285


>gi|197287151|ref|YP_002153023.1| site-specific tyrosine recombinase XerC [Proteus mirabilis HI4320]
 gi|227357156|ref|ZP_03841525.1| tyrosine recombinase [Proteus mirabilis ATCC 29906]
 gi|34222763|sp|O31207|XERC_PROMI RecName: Full=Tyrosine recombinase xerC
 gi|2645802|gb|AAB87500.1| site-specific recombinase [Proteus mirabilis]
 gi|194684638|emb|CAR46553.1| tyrosine recombinase [Proteus mirabilis HI4320]
 gi|227162688|gb|EEI47655.1| tyrosine recombinase [Proteus mirabilis ATCC 29906]
          Length = 307

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 85/322 (26%), Positives = 149/322 (46%), Gaps = 22/322 (6%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           ++PE +S        ++L  +E+ER LS +T+++Y+         +       I I    
Sbjct: 6   DVPETLSL----AIDSFLSYIEVERRLSPVTVENYQRQLMTIAQMMVA-----IKINQWS 56

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            L    +R  ++K     +   SL    S ++SFL +   + +   +    +R  K    
Sbjct: 57  LLESQHVRMLLAKSHRSGLQPASLALRFSALRSFLDWQVSQGMLAVNPAKGVRTPKSGRH 116

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP+ ++  +   L++  L         +  R+  +L ++YG GLR+SE  +L   +I   
Sbjct: 117 LPKNMDVDEVSQLMNIDL------KDPLSVRDRTMLEVMYGAGLRLSELTNLNINDIDLQ 170

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVF 243
           +  +R+ GKG K R VPL     + +  +      +L       +F   +  K L+    
Sbjct: 171 EGEVRVLGKGSKERKVPLGRKAVEWLQHW--FAMRELYSPEDTAVFISTKSGKRLSVRSV 228

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           Q+         GL      H LRHSFATHLL + GDLR++Q +LGH  LSTTQ+YT+++ 
Sbjct: 229 QKRFELWGVKQGLSSHVNPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQVYTHLDF 288

Query: 304 KNGGDWMMEIYDQTHPSITQKD 325
           ++    + ++YD  HP   ++ 
Sbjct: 289 QH----LAKVYDAAHPRAKREK 306


>gi|41407506|ref|NP_960342.1| site-specific tyrosine recombinase XerD [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395859|gb|AAS03725.1| hypothetical protein MAP_1408 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 313

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 86/323 (26%), Positives = 148/323 (45%), Gaps = 19/323 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + +  L  + Q +L +L IERG++  TL SY  D R++   L+        I  + ++  
Sbjct: 1   MTTVALETQLQGYLDHLTIERGVAANTLSSYRRDLRRYTKHLSDR-----GISDLAKVGE 55

Query: 69  TEIRAFISKRRTQK-------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            ++  F+   R          +   S  R+L  ++   ++L    +        +R    
Sbjct: 56  DDVSEFLVALRRGDPDTGAAALSAVSAARALIAVRGLHRFLAAEGLAELDVARAVRPPTP 115

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              LP++L   Q L L++     +  +   +  RN A+L LLY  G RISEA+ L   ++
Sbjct: 116 GRRLPKSLTIDQVLALLEAAGGESPADG-PLTLRNRALLELLYSTGARISEAVGLDVDDV 174

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLN 239
                ++ ++GKG K R+VP+      A+  Y     ++L    +    +F  +RG  L+
Sbjct: 175 DTQARSVLLRGKGGKQRLVPIGRPAVAALDAYLVRGRWELARRGRGTPAIFLNVRGGRLS 234

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                + ++      G+    + H LRHSFATHLL  G D+R +Q +LGH  ++TTQIYT
Sbjct: 235 RQSAWQVLQDAAERAGITSGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 294

Query: 300 NVNSKNGGDWMMEIYDQTHPSIT 322
            V        + E++ + HP   
Sbjct: 295 MVT----VHALREVWAEAHPRAR 313


>gi|332829855|gb|EGK02497.1| tyrosine recombinase XerD [Dysgonomonas gadei ATCC BAA-286]
          Length = 299

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 88/307 (28%), Positives = 150/307 (48%), Gaps = 16/307 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   L +E+ LS  ++ +Y  D  +   FL     +        ++   +++ FI++
Sbjct: 8   IKKYRNYLLLEKSLSPNSIDAYMTDLDKLSGFLENEGLKA------EEMKLDDLQQFIAQ 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I  RS+ R +SGIKSF  +L             +   K    LP  L+  +   L
Sbjct: 62  LYDLGINARSVARIISGIKSFYNFLVLDGYMQADPTELLETPKIGLKLPTVLSLDEIEKL 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +  + L T         RN AIL +LY CGLRISE  +L   ++  D+  ++++GKG K 
Sbjct: 122 MSVIDLSTKE-----GQRNRAILEVLYSCGLRISELTNLKFSDLFFDEGFIKVEGKGSKQ 176

Query: 198 RIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +    I +Y Y     D+    +  LF   RG  ++  +   +I+Q     G+
Sbjct: 177 RLVPISHTAINEIEKYLYYRREMDIKKGSEDILFLSKRGTAISRIMVFHFIKQYADQAGI 236

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HT RHSFATHLL  G ++R+IQ +LGH +++TT+IYT+++ +     ++E    
Sbjct: 237 KKTISPHTFRHSFATHLLEGGANIRAIQLMLGHEKITTTEIYTHMDREYLRQEIIE---- 292

Query: 317 THPSITQ 323
            HP   +
Sbjct: 293 HHPRNKK 299


>gi|327537504|gb|EGF24226.1| site-specific DNA tyrosine recombinase, XerD [Rhodopirellula
           baltica WH47]
          Length = 317

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 86/306 (28%), Positives = 145/306 (47%), Gaps = 20/306 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
             +L  L+ E  L+  T+ +Y  D ++F+ ++               L+ TE+  F++  
Sbjct: 29  DEFLVYLKRECHLADNTVAAYGRDMKRFVTWMDGRRP--------ADLTITELSDFVASL 80

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   S+ R++  I++F KYL+   IT ++    +   K    +P  L+  +     
Sbjct: 81  HGEGLAPASISRAIVAIRTFFKYLQLEGITVDNPAELLATQKAWQRMPGVLSPNEVEAF- 139

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
               L    ++     R+ A+L +LY  G R SE  +L  +++  D+ TLR  GKGDK R
Sbjct: 140 ----LSAVKKSDSFWQRDRALLEVLYATGCRASEVCTLRVRDLTLDEKTLRCHGKGDKQR 195

Query: 199 IVPLLPSVRKAILEYYDLCPF---DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           +VP+     ++I  Y +       D N      LF    GK L+     R +++  +  G
Sbjct: 196 MVPIGGRAIRSIQLYLEESRHILADRNPGQIDELFLSRGGKALDRIQLWRLVKRYAKRAG 255

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + H+LRHSFATHLL+ G DLR +Q +LGH  + TTQIYT+V        +  ++ 
Sbjct: 256 ISDEISPHSLRHSFATHLLAGGADLRQVQEMLGHASIQTTQIYTHV----EHSRLQRVHR 311

Query: 316 QTHPSI 321
             HP  
Sbjct: 312 DFHPRA 317


>gi|229545742|ref|ZP_04434467.1| site-specific recombinase XerD [Enterococcus faecalis TX1322]
 gi|229309192|gb|EEN75179.1| site-specific recombinase XerD [Enterococcus faecalis TX1322]
          Length = 299

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 98/325 (30%), Positives = 164/325 (50%), Gaps = 30/325 (9%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK-IT 59
           ME  N PE+           + + L +ERG S+ T ++Y+ D + F +FL     +  +T
Sbjct: 1   MEEKNWPEL-----------FARYLIVERGYSEKTKKAYQEDIQHFFLFLKTSGNDNYLT 49

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           ++ +      ++RA++S+   Q+    S+ R ++ ++SF ++L K +   E+    +   
Sbjct: 50  VEHL------DVRAYLSELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMK 103

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           KK   LPR   EK+   L +     ++   + +D RN A+L +LYG G+R+SE  +LT  
Sbjct: 104 KKQLRLPRFFYEKEMDALFE-----SAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVD 158

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGK 236
            +    S L + GKG+K R VP     + A+ +Y +     L    Q     +F    G+
Sbjct: 159 AVDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGE 218

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            + P   +  + QL +   L      H LRH+FATHLL+NG D+R++Q +LGH  LSTTQ
Sbjct: 219 QITPTGIEYVLNQLIKKSSLNAEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQ 278

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSI 321
           IY +V  ++    + + Y   HP  
Sbjct: 279 IYAHVTKES----LQKNYRTFHPRA 299


>gi|260551079|ref|ZP_05825283.1| tyrosine recombinase XerD [Acinetobacter sp. RUH2624]
 gi|260405846|gb|EEW99334.1| tyrosine recombinase XerD [Acinetobacter sp. RUH2624]
          Length = 306

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 91/320 (28%), Positives = 149/320 (46%), Gaps = 19/320 (5%)

Query: 2   EGNNLPEIVS-FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           +   +P  V   E L   Q +   L  +  +S  T  +Y  D  Q        +  K + 
Sbjct: 4   KKPRIPSPVQIPEHLSFLQGFRDYLVAQ-TVSPHTRNAYLSDLIQCAELHKKNSLPKWSS 62

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             I  +        + +        RS+ R LS ++ F K+L+++K+ +++ +    + K
Sbjct: 63  DDISDV--------LIELTKIGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPK 114

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
              +LP+ L+E+    L+          T  +  R+ A+  +LY CGLR+SE ++L  + 
Sbjct: 115 IGRALPKDLSEEDVEALI-----QAPDITTALGLRDRAMFEVLYACGLRVSELINLRLEL 169

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I   Q  LRI GKG+K R+VPL       +  Y +     L       LF    G  ++ 
Sbjct: 170 INLKQGYLRITGKGNKERLVPLGQYACDWVERYLNDARPQLYKTSTDYLFLTQHGGIMSR 229

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             F   I++      +    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+
Sbjct: 230 QNFWYAIKRYALQANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTH 289

Query: 301 VNSKNGGDWMMEIYDQTHPS 320
           V        M +++++ HP 
Sbjct: 290 VAQVR----MQQLHEKHHPR 305


>gi|145629633|ref|ZP_01785430.1| tyrosine recombinase [Haemophilus influenzae 22.1-21]
 gi|144978144|gb|EDJ87917.1| tyrosine recombinase [Haemophilus influenzae 22.1-21]
          Length = 295

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 92/312 (29%), Positives = 152/312 (48%), Gaps = 17/312 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +L     +   L IER +S  T+ +Y+      +  LA     +  I +  Q++ + +R 
Sbjct: 1   MLTALNRYWDYLRIERQMSPHTITNYQHQLDATIKILA-----QQDIHSWTQVTPSVVRF 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            +++ + Q + ++SL   LS ++ FL +L ++     +    +   K+   LP+ ++ +Q
Sbjct: 56  ILAESKKQGLKEKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGKHLPKNMDGEQ 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+       +   + ID R+ AIL L+Y  GLR+SE   L   +I      +R+ GK
Sbjct: 116 VQRLL------ANDSKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R+VP       AI E+  +    L       LF    G  ++    Q+ +      
Sbjct: 170 GNKERVVPFGRYASHAIQEWLKVR--ALFNPKDEALFVSQLGNRISHRAIQKRLETWGIR 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL      H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    + E+
Sbjct: 228 QGLNNHLNPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEV 283

Query: 314 YDQTHPSITQKD 325
           YDQ HP   +K 
Sbjct: 284 YDQAHPRAKRKK 295


>gi|46446417|ref|YP_007782.1| XerD protein [Candidatus Protochlamydia amoebophila UWE25]
 gi|46400058|emb|CAF23507.1| probable XerD protein [Candidatus Protochlamydia amoebophila UWE25]
          Length = 291

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 88/307 (28%), Positives = 151/307 (49%), Gaps = 17/307 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++++ +++   L  E+GL++ TL++Y  D   F  FL     ++ ++    Q+    I  
Sbjct: 1   MIRDLEDFFIYLASEKGLAQNTLEAYRRDLFSFATFL-----KQRSVNNWSQIHLQAIID 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++ ++ Q     S+ R+L  IK   ++LK+  + T + +L M   K    +P  L+ ++
Sbjct: 56  YLALKQQQHYASASICRALIAIKVLFRFLKREGMITTNILLLMETPKLWQLIPDVLSLEE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++        +   W  AR+ AIL  LY CGLR+SE   L   ++ D    +R+ GK
Sbjct: 116 IDRIL-----AIPNIQTWRGARDKAILETLYACGLRVSELCQLKIYDVDDT--FVRVLGK 168

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K RIVP+      AI  Y        N   +  LF   + KPL   +  + ++   R 
Sbjct: 169 GGKERIVPIGQQAIAAIDGYLSFREGGENSRNEF-LFITKKSKPLTRALVWKLVKFYARQ 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +  S + HT RH+FATHLL +G DLR IQ +LGH  +++T  YT+V+       + + 
Sbjct: 228 ASIFKSISPHTFRHTFATHLLDHGADLRVIQDMLGHASINSTDRYTHVSQ----IRLQQA 283

Query: 314 YDQTHPS 320
           +   HP 
Sbjct: 284 FQAFHPR 290


>gi|257089964|ref|ZP_05584325.1| phage integrase [Enterococcus faecalis CH188]
 gi|312903388|ref|ZP_07762568.1| tyrosine recombinase XerC [Enterococcus faecalis TX0635]
 gi|256998776|gb|EEU85296.1| phage integrase [Enterococcus faecalis CH188]
 gi|310633264|gb|EFQ16547.1| tyrosine recombinase XerC [Enterococcus faecalis TX0635]
 gi|315577626|gb|EFU89817.1| tyrosine recombinase XerC [Enterococcus faecalis TX0630]
          Length = 299

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 97/325 (29%), Positives = 161/325 (49%), Gaps = 30/325 (9%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK-IT 59
           ME  N PE+           + + L +ERG S+ T ++Y+ D + F  FL     +  +T
Sbjct: 1   MEEKNWPEL-----------FARYLIVERGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLT 49

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           ++ +      ++RA++S+   Q+    S+ R ++ ++SF ++  K +   E+    +   
Sbjct: 50  VEHL------DVRAYLSELYDQEYSRNSISRKIASLRSFYQFSLKNEAIQENPFSYVHMK 103

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           KK   LPR   EK+   L +     ++     +D RN A+L +LYG G+R+SE  +LT  
Sbjct: 104 KKQLRLPRFFYEKEMDALFE-----SAQGEHPLDLRNQALLEVLYGTGIRVSECANLTVD 158

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGK 236
            +    S L + GKG+K R VP     + A+ +Y +     L    Q     +F    G+
Sbjct: 159 AVDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGE 218

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            + P   +  + QL +   L      H LRH+FATHLL+NG D+R++Q +LGH  LSTTQ
Sbjct: 219 QITPTGIEYVLNQLIKKSSLNAEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQ 278

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSI 321
           IY +V  ++    + + Y   HP  
Sbjct: 279 IYAHVTKES----LQKNYRTFHPRA 299


>gi|90581049|ref|ZP_01236849.1| tyrosine recombinase [Vibrio angustum S14]
 gi|90437745|gb|EAS62936.1| tyrosine recombinase [Vibrio angustum S14]
          Length = 301

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 84/317 (26%), Positives = 158/317 (49%), Gaps = 16/317 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++   L +  + + + L  ER LS  T Q+Y+    +    L      ++++   +Q+  
Sbjct: 1   MLPRTLEQPLERFYEYLRSERELSLHTQQNYKRQLTRVAEQLV-----ELSVDNWQQVDA 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R   SK     +   SL   LS ++SF  +L  + +   +    +   +K+  LP+ 
Sbjct: 56  GWVRQIASKGMRDGLKASSLAMRLSALRSFFDFLVHQNVLKANPAKGVAAPRKARPLPKN 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+  +   L+D       ++   +  R+ A++ L+YG GLR++E + +  ++I   +  L
Sbjct: 116 LDVDEMNQLLDV------NDDDPLAIRDRAMMELMYGAGLRLAELVGIDVRHISLSKGDL 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R+ GKGDK R+VP     R+ I ++  L   ++    +  LF    G  ++    Q+ + 
Sbjct: 170 RVIGKGDKERVVPFSGLAREWIAKWLKLRD-NIAQAEEPALFVSKLGTRISTRNVQKRMA 228

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +  +   +      H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++   
Sbjct: 229 EWGQKQAVSSHINPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH--- 285

Query: 309 WMMEIYDQTHPSITQKD 325
            + ++YD+ HP   +  
Sbjct: 286 -LAKVYDEAHPRAKRNK 301


>gi|90408775|ref|ZP_01216920.1| integrase/recombinase (XerC/CodV family) [Psychromonas sp. CNPT3]
 gi|90310119|gb|EAS38259.1| integrase/recombinase (XerC/CodV family) [Psychromonas sp. CNPT3]
          Length = 298

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 84/312 (26%), Positives = 168/312 (53%), Gaps = 16/312 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L K+   +L ++  +RGLS +T+++Y  +  +F+  L     E   I++ + L+   +R 
Sbjct: 3   LQKQIDRYLNHIASQRGLSPITIKNYSRNLAEFISLL-----EPQNIKSWQDLNSDHVRL 57

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            I +   + I  RS+   +S ++SFL++L + ++ T +    +   K +  LP+ ++  +
Sbjct: 58  IIKELHQKGIKSRSIATKISALRSFLEFLVQDEVLTFNPAKGVVTPKLNKPLPKNISVDE 117

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++       HE   +  R+  ++ L+Y  GLR+SE + +  +++   ++ + + GK
Sbjct: 118 VFQLLNI------HEDDPLSLRDQCMMELMYSSGLRLSELVGIDLKDLKLREAEVMVLGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R++P+     +++  +  + P +L  + +  LF   + K ++    Q  + +    
Sbjct: 172 GSKQRLLPITKKAVESLRAWLKVRP-ELCESGEQALFVSKQKKRISARNVQMRMEKWGLQ 230

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             LP     H LRHSFATH+L + G+LR++QS+LGH  LSTTQ+YT+++ ++    + E+
Sbjct: 231 QQLPSHLNPHKLRHSFATHMLESSGNLRAVQSLLGHANLSTTQVYTHLDFQH----LAEV 286

Query: 314 YDQTHPSITQKD 325
           YD+ HP   +K 
Sbjct: 287 YDKAHPRAKRKK 298


>gi|91789051|ref|YP_550003.1| tyrosine recombinase XerD subunit [Polaromonas sp. JS666]
 gi|91698276|gb|ABE45105.1| tyrosine recombinase XerD subunit [Polaromonas sp. JS666]
          Length = 300

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 154/304 (50%), Gaps = 14/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              ++  L +E GLSK TL +Y  D   F  +LA   ++   +    +   T++  + S 
Sbjct: 9   IDGFIDALWLEDGLSKNTLAAYRRDLSLFAAWLAAPAQQGRRLDDTVE---TDLNRYFST 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R L+  K + ++  + ++ T    L +++ K++  +P+ ++E Q   L
Sbjct: 66  RHA-TTKATSANRRLTVFKRYFRWALRERLITVDPTLKLQSAKQALRVPKVMSEAQVEAL 124

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +         E+  +  R+ A+L L+Y  GLR+SE + L   ++  ++  LR+ GKG K 
Sbjct: 125 L-----AAPSESTPLGQRDRAMLELMYASGLRVSELVGLKTFHVGLNEGVLRVMGKGSKE 179

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP     R+ ++ Y  +  P  L       LF   RG  ++  +F   +++  +  G+
Sbjct: 180 RLVPFGQVAREWVVLYLAEARPAILGGQQTDDLFVTNRGSGMSRVMFWMLVKKYAQLAGI 239

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR++Q +LGH  +STT IYT+V  +     +  ++ Q
Sbjct: 240 HSPLSPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVARER----LKALHAQ 295

Query: 317 THPS 320
            HP 
Sbjct: 296 HHPR 299


>gi|296840755|ref|ZP_06863381.2| tyrosine recombinase XerC [Neisseria polysaccharea ATCC 43768]
 gi|296840030|gb|EFH23968.1| tyrosine recombinase XerC [Neisseria polysaccharea ATCC 43768]
          Length = 334

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 85/313 (27%), Positives = 149/313 (47%), Gaps = 13/313 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
                  +L+N+  E G S+ T+ +Y  D  +    LA    E       + LS  +  A
Sbjct: 35  FAAHFDAYLENIVRE-GKSEHTVAAYRRDLEELFALLAQMPSEAEG-GVPQDLSRRDFTA 92

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            + +   + +  R+L R LS  + +  +L KR +       +++  K+   +P+AL+++ 
Sbjct: 93  ALRRLSQRGLNARTLARKLSSWRQYCAWLVKRGLLHTDPTADIKPPKQPERVPKALSQEW 152

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++D  +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GK
Sbjct: 153 LNRMLDLPV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNVDDVYLDEAWVHVTGK 208

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R VPL     +A+  Y  L     +      LF G  G  L+    Q+ +      
Sbjct: 209 GRKQRQVPLTGKSVEALKNYLPLRQTASDGK---ALFTGRNGTRLSQRQIQKRLESWAVQ 265

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G     + H +RHS+A+HLL +  D+R++Q +LGH  LSTTQIYT ++     D +  +
Sbjct: 266 NGDGRHISPHMMRHSYASHLLQSSRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARL 321

Query: 314 YDQTHPSITQKDK 326
           YD+ HP   ++D+
Sbjct: 322 YDEAHPRAKRQDE 334


>gi|126663469|ref|ZP_01734466.1| site-specific recombinase [Flavobacteria bacterium BAL38]
 gi|126624417|gb|EAZ95108.1| site-specific recombinase [Flavobacteria bacterium BAL38]
          Length = 299

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 99/305 (32%), Positives = 156/305 (51%), Gaps = 16/305 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   L +ERGLSK T+++Y  D  + ++FL  +    I +  I  +S   I+ FI  
Sbjct: 8   IKEYQNYLRLERGLSKNTIENYTFDIEKLVVFLNTH---DIQVSPI-HISEETIQQFI-Y 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
               K+  RS  R +SG+KSF  YL       ++ +  +   K    LP  L  ++   L
Sbjct: 63  EIASKVNARSQSRLISGLKSFFNYLVFEDYRKDTPLELIEVPKTGRKLPDTLATEEIDAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +  + L T    +     N A+L  LY CGLR+SE + L   ++  ++  ++I GKG+K 
Sbjct: 123 IAAIDLSTPEGER-----NRAMLETLYSCGLRVSELVGLKISDLFFEEGFIKITGKGNKQ 177

Query: 198 RIVPLLPSVRKAILEYYDL--CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R VP+  S  K I  Y +L    + +    +  LF   RGK L   +    I+ L   + 
Sbjct: 178 RFVPVGGSTIKYITSYMNLIRVHYTVQKGHEDTLFLNRRGKQLTRAMVFTIIKDLAVKIN 237

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L  + + HT RHSFATHLL NG DLRSIQ +LGH  ++TT++Y +++ K    ++ E+ +
Sbjct: 238 LNKTISPHTFRHSFATHLLENGADLRSIQLMLGHESITTTEVYMHLDRK----FLSEVLN 293

Query: 316 QTHPS 320
             HP 
Sbjct: 294 NYHPR 298


>gi|150009884|ref|YP_001304627.1| tyrosine type site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|256838407|ref|ZP_05543917.1| tyrosine recombinase XerD [Parabacteroides sp. D13]
 gi|262382840|ref|ZP_06075977.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_33B]
 gi|298374238|ref|ZP_06984196.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_19]
 gi|301312384|ref|ZP_07218300.1| tyrosine recombinase XerD [Bacteroides sp. 20_3]
 gi|149938308|gb|ABR45005.1| tyrosine type site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|256739326|gb|EEU52650.1| tyrosine recombinase XerD [Parabacteroides sp. D13]
 gi|262295718|gb|EEY83649.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_33B]
 gi|298268606|gb|EFI10261.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_19]
 gi|300829567|gb|EFK60221.1| tyrosine recombinase XerD [Bacteroides sp. 20_3]
          Length = 301

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 151/304 (49%), Gaps = 12/304 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +   L +E+ LS  ++ +Y  D  + L F           + ++++SY +++ FI++
Sbjct: 8   INRYNTYLRLEKSLSANSIDAYLTDLDKLLRFAEDEK------KDVKEISYDDLQQFIAQ 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R   I  RS  R +SGIKSF ++L      T      + + K    LP  L   +  ++
Sbjct: 62  LRDIGIHPRSQARIISGIKSFYRFLLLDNYITNDPTELLESPKIGLKLPEVLTVNEINSI 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D + L           RN A+L +LY CGLR+SE   L   +I   +  +R++GKG K 
Sbjct: 122 LDTIDLTLPE-----GQRNRAMLEVLYSCGLRVSELTGLRYSDIYPKEGFIRVEGKGSKQ 176

Query: 198 RIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+     + I  Y        +    +  LF   RG  L+  +    I+Q     G+
Sbjct: 177 RLVPISEVALREIKNYLYDRNSVVVKKGFEDILFLSRRGTALSRIMVFHIIKQQTEAAGI 236

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HT RHSFATHLL  G +LR+IQ +LGH +++TT+IYT+++ +     ++E + +
Sbjct: 237 HKNVSPHTFRHSFATHLLEGGANLRAIQEMLGHEKITTTEIYTHIDREFLRKEILEHHPR 296

Query: 317 THPS 320
           + P 
Sbjct: 297 SRPR 300


>gi|258405018|ref|YP_003197760.1| integrase family protein [Desulfohalobium retbaense DSM 5692]
 gi|257797245|gb|ACV68182.1| integrase family protein [Desulfohalobium retbaense DSM 5692]
          Length = 306

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 103/312 (33%), Positives = 160/312 (51%), Gaps = 12/312 (3%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +  + +L  L+ +RG S  T+++Y  D  QF   L       + +   +Q+    ++ 
Sbjct: 7   LPETVETFLAYLDGQRGASPATVRAYRRDLEQFEAVLRRRG---LDMDRPQQIDREAVQG 63

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F +    Q +   S+ R LS ++ F ++  +R+    +   ++ N K+    P+ L  +Q
Sbjct: 64  FAADLHRQGLRRSSVSRKLSAVRRFFRFCLQRQWVDTNPAHSVANPKQEVRHPKVLTVEQ 123

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           AL L+D  L            R+ A+  LLYG GLRISEAL L   +I   +  +R+ GK
Sbjct: 124 ALELMDTHL-----PNDPKGCRDLALAELLYGSGLRISEALQLDIDDIEPGRGVVRVVGK 178

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R+ PL    +  +  Y +     +    +  LF G+RGK L      R + +L + 
Sbjct: 179 GGKERLAPLTEPGQSRLRRYLEQRRAFVVDPQEPALFLGLRGKRLQRREANRILARLSQT 238

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GLP   + H LRHSFATHLL +G DLRS+Q +LGH RLSTTQ YT+++     D +M+ 
Sbjct: 239 AGLPEEISPHVLRHSFATHLLRSGADLRSVQELLGHSRLSTTQRYTHLS----LDGIMQT 294

Query: 314 YDQTHPSITQKD 325
           YDQ HP   + +
Sbjct: 295 YDQAHPKAKKNE 306


>gi|254448186|ref|ZP_05061649.1| tyrosine recombinase XerD [gamma proteobacterium HTCC5015]
 gi|198262312|gb|EDY86594.1| tyrosine recombinase XerD [gamma proteobacterium HTCC5015]
          Length = 311

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 88/307 (28%), Positives = 143/307 (46%), Gaps = 18/307 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L NL +  GLS  TL SY  D RQ   FL            + Q     ++ F++ 
Sbjct: 20  IRRFLDNLWMSHGLSDNTLGSYGSDLRQLSSFLGDKG------SHLLQADRGALQDFLAF 73

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R +++    S  R LS ++ F +Y        E     + + K    LP++++E+    L
Sbjct: 74  RLSKRGKASSAARLLSSLRRFYRYQVSEGRLQEDPTALLESPKLGVRLPKSISEEHIERL 133

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +             +  R+  +L +LY  GLR++E ++L  + I      +++ GKG K 
Sbjct: 134 L-----RAPDTHTDLGLRDRLMLEMLYASGLRVTELVTLRLEQIDAHHGIVKVMGKGRKE 188

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           R+VP+       + EY      DL          LF   RG  +        I++  +  
Sbjct: 189 RLVPIGDEALAWLGEYLQSARPDLLKGRDTTTPFLFVTRRGGGMTRQTAWNVIKKYAQQA 248

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            L    + HTLRH+FATHLL++G DLR++Q +LGH  LSTTQIYT+V ++     + + +
Sbjct: 249 HLGGDLSPHTLRHAFATHLLNHGADLRAVQMLLGHSDLSTTQIYTHVANER----LRQFH 304

Query: 315 DQTHPSI 321
           +Q HP  
Sbjct: 305 EQHHPRA 311


>gi|84498372|ref|ZP_00997169.1| tyrosine recombinase [Janibacter sp. HTCC2649]
 gi|84381872|gb|EAP97755.1| tyrosine recombinase [Janibacter sp. HTCC2649]
          Length = 325

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 88/326 (26%), Positives = 151/326 (46%), Gaps = 11/326 (3%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI- 60
            G+   + VS         + ++L +ER  S  T+++Y  D R FL  +      +    
Sbjct: 5   RGDETVQGVSASRPAVIDAFERHLRLERSRSPHTVRAYLADLRDFLAHVDGEGANEGGTP 64

Query: 61  ----QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
                 ++ +   ++RA++           S+ R  + +++F  +  ++        L +
Sbjct: 65  RAPQTALQDIRLADLRAWLGVLAAAGAARSSVARRSASLRTFFGWATRQGHVDVDPSLRL 124

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              K+  +LP  L +  A  L+D V    + +   +  RN A+L LLY  G+R+ E   L
Sbjct: 125 VAPKRHRTLPPVLAKDDAAGLLD-VAAVAADDNDPVHVRNRAVLELLYATGVRVGELTGL 183

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRG 235
              ++    + +R+ GKGDK R VP     R A+ ++ D+    L ++   P LF G RG
Sbjct: 184 DIDDVDFHSNVVRVIGKGDKERRVPFGGPARSALAKWLDVGRPRLVVDGSGPGLFLGQRG 243

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           + ++P   +  +  +  ++        H LRHS ATHLL  G DLR +Q +LGH  L+TT
Sbjct: 244 RRIDPRQVRTLVHDMLTHVPDAPDLGPHGLRHSAATHLLEGGADLRMVQELLGHASLATT 303

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHPSI 321
           QIYT+V+ +     +   Y Q HP  
Sbjct: 304 QIYTHVSIER----LAASYAQAHPRA 325


>gi|312951578|ref|ZP_07770474.1| tyrosine recombinase XerC [Enterococcus faecalis TX0102]
 gi|310630544|gb|EFQ13827.1| tyrosine recombinase XerC [Enterococcus faecalis TX0102]
          Length = 299

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 99/325 (30%), Positives = 164/325 (50%), Gaps = 30/325 (9%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK-IT 59
           ME  N PE+           + + L +ERG S+ T ++Y+ D + F  FL     +  +T
Sbjct: 1   MEEKNWPEL-----------FARYLIVERGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLT 49

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           ++ +      E+RA++S+   Q+    S+ R ++ ++SF ++L K +   E+    +   
Sbjct: 50  VEHL------EVRAYLSELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMK 103

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           KK   LPR   EK+   L +     ++   + +D RN A+L +LYG G+R+SE  +LT  
Sbjct: 104 KKQLRLPRFFYEKEMDALFE-----SAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVD 158

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGK 236
            +    S L + GKG+K R VP     + A+ +Y +     L    Q     +F    G+
Sbjct: 159 AVDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGE 218

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            + P   +  + QL +   L +    H LRH+FATHLL+NG D+R++Q +LGH  LSTTQ
Sbjct: 219 QITPTGIEYVLNQLIKKSSLNVEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQ 278

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSI 321
           IY +V  ++    + + Y   HP  
Sbjct: 279 IYAHVTKES----LQKNYRTFHPRA 299


>gi|330964222|gb|EGH64482.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 290

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 89/301 (29%), Positives = 146/301 (48%), Gaps = 17/301 (5%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           +L  ER +S  TL++Y  D  + L +      +K  + +   L    +R+F +++  Q  
Sbjct: 2   HLRSERQVSPHTLEAYRRDLSKVLAYC-----QKAQLSSWNDLDIQHLRSFTARQHQQGQ 56

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
             RSL R LS ++ F KYL +  +        +   K    LP+ L+  +   L+D  + 
Sbjct: 57  SSRSLARMLSAVRGFYKYLNREGLCQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGV- 115

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
               E  ++  R+ AI+ LLY  GLR+SE   L    +      +++ GKG K R++P+ 
Sbjct: 116 ----EDDFLAHRDQAIMELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVG 171

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              R+A+  +  L    L       +F   +GK L P   Q  I+       L  +   H
Sbjct: 172 SKARQALETWLPLR--ALTNPQDDAVFVSQQGKRLGPRAVQLRIKTAGER-ELGQNLHPH 228

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +YD  HP   +
Sbjct: 229 MLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAHPRAKR 284

Query: 324 K 324
           K
Sbjct: 285 K 285


>gi|319900751|ref|YP_004160479.1| tyrosine recombinase XerD subunit [Bacteroides helcogenes P 36-108]
 gi|319415782|gb|ADV42893.1| tyrosine recombinase XerD subunit [Bacteroides helcogenes P 36-108]
          Length = 317

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 90/312 (28%), Positives = 154/312 (49%), Gaps = 17/312 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + Q L +E+ LS  TL +Y+ D  + L FL    +EKI    I  ++  +++ F + 
Sbjct: 17  IRKYNQYLRLEKSLSPNTLDAYQTDLEKLLRFLE---DEKI---DILAVTLDDLQRFTAG 70

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I  RS  R LSGIKSF  +L             +   K    LP  L  ++   +
Sbjct: 71  LHDIGIHPRSQARILSGIKSFFHFLVLAGYLENDPSELLEGPKIGFKLPEVLTVEEIDRI 130

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +  + ++T+        RN AIL  LY CGLR+SE  +L   ++  ++  ++++GKG K 
Sbjct: 131 IAAIDMNTNE-----GQRNRAILETLYSCGLRVSELCNLKISDLYFNEGFIKVEGKGSKQ 185

Query: 198 RIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R+VP+       I  + D     + +  + +  +F    G  ++  +   +I++L    G
Sbjct: 186 RLVPISHRAITEITNWLDDRKERWKIKKDFEDYVFLARWGNGISRIMIFHFIKELAEKAG 245

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  S + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++       ++E   
Sbjct: 246 ITKSISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIE--- 302

Query: 316 QTHPSITQKDKK 327
             HP   +  ++
Sbjct: 303 -HHPRNIKYREE 313


>gi|315618491|gb|EFU99077.1| tyrosine recombinase XerC [Escherichia coli 3431]
          Length = 282

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 17/297 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +ER LS +TL +Y+      + F +     +  +Q+ +Q   T +R F  + R + +G  
Sbjct: 1   MERQLSPITLLNYQRQLEAIINFAS-----ENGLQSWQQCDVTMVRNFAVRSRRKGLGAA 55

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           SL   LS ++SF  +L  +     +    +   K    LP+ ++      L+D  +    
Sbjct: 56  SLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI---- 111

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                +  R+ A+L ++YG GLR+SE + L  +++  +   + + GKG K R +P+  + 
Sbjct: 112 --NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 169

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              I  + DL   DL  +    LF    GK ++    Q+   +     GL      H LR
Sbjct: 170 VAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 227

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
           HSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  +YD  HP   +
Sbjct: 228 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHPRAKR 280


>gi|193076109|gb|ABO10716.2| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC
           17978]
          Length = 306

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 92/320 (28%), Positives = 147/320 (45%), Gaps = 19/320 (5%)

Query: 2   EGNNLPEIVS-FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           +   +P  V   E L   Q +   L  +  +S  T  +Y  D  Q             T 
Sbjct: 4   KKPRIPSPVQIPEHLSFLQGFRDYLVAQ-TVSPHTRNAYLSDLIQCSELHKKNRLPDWTS 62

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             I  +        + +        RS+ R LS ++ F K+L+++K+ +++ +    + K
Sbjct: 63  DDISDV--------LIELTKVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPK 114

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
              +LP+ L+E+    L+          T  +  R+ A+  +LY CGLR+SE L+L  + 
Sbjct: 115 IGRALPKDLSEEDVEALI-----QAPDITTALGLRDRAMFEVLYACGLRVSELLNLRLEL 169

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I   Q  LRI GKG+K R+VPL       +  Y +     L  +    LF    G  ++ 
Sbjct: 170 INLKQGYLRITGKGNKERLVPLGQYACDWVERYLNEARPQLYKSSTDYLFLTQHGGIMSR 229

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             F   I+       +    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+
Sbjct: 230 QNFWYAIKHYALQANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTH 289

Query: 301 VNSKNGGDWMMEIYDQTHPS 320
           V        M +++++ HP 
Sbjct: 290 VAQVR----MQQLHEKHHPR 305


>gi|118464686|ref|YP_882254.1| site-specific tyrosine recombinase XerD [Mycobacterium avium 104]
 gi|254775522|ref|ZP_05217038.1| site-specific tyrosine recombinase XerD [Mycobacterium avium subsp.
           avium ATCC 25291]
 gi|118165973|gb|ABK66870.1| tyrosine recombinase XerD [Mycobacterium avium 104]
          Length = 313

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 86/323 (26%), Positives = 147/323 (45%), Gaps = 19/323 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + +  L  + Q +L +L IERG++  TL SY  D R++   L+        I  + ++  
Sbjct: 1   MTTVALETQLQGYLDHLTIERGVAANTLSSYRRDLRRYTKHLSDR-----GISDLAKVGE 55

Query: 69  TEIRAFISKRRTQK-------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            ++  F+   R          +   S  R+L  ++   ++L    +        +R    
Sbjct: 56  DDVSDFLVALRRGDPDTGAAALSAVSAARALIAVRGLHRFLAAEGLAELDVARAVRPPTP 115

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              LP++L   Q L L++     +  +   +  RN A+L LLY  G RISEA+ L   ++
Sbjct: 116 GRRLPKSLTIDQVLALLEAAGGESPADG-PLTLRNRALLELLYSTGARISEAVGLDVDDV 174

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLN 239
                ++ ++GKG K R+VP+      A+  Y      +L    +    +F  +RG  L+
Sbjct: 175 DTQARSVLLRGKGGKQRLVPIGRPAVAALDAYLVRGRSELARRGRGTPAIFLNVRGGRLS 234

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                + ++      G+    + H LRHSFATHLL  G D+R +Q +LGH  ++TTQIYT
Sbjct: 235 RQSAWQVLQDAAERAGITSGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 294

Query: 300 NVNSKNGGDWMMEIYDQTHPSIT 322
            V        + E++ + HP   
Sbjct: 295 MVT----VHALREVWAEAHPRAR 313


>gi|300870084|ref|YP_003784955.1| tyrosine recombinase XerD [Brachyspira pilosicoli 95/1000]
 gi|300687783|gb|ADK30454.1| tyrosine recombinase, XerD [Brachyspira pilosicoli 95/1000]
          Length = 288

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 90/303 (29%), Positives = 153/303 (50%), Gaps = 17/303 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +E+GLS+ TL+SY  D   +L FL          +TI + +  +I  F+S+R+ Q    R
Sbjct: 1   MEKGLSQNTLESYRRDIVIYLDFLGR------NKKTILKATRKDIEKFLSERKEQGSKSR 54

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++ R+   I +  K+L      +++   N+  ++    LP +L  ++   L+        
Sbjct: 55  TVARNKVSIVNLYKFLVMENYISKNPTDNLEVIRLKRVLPESLTTEEVDDLLSVH----- 109

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
           +E      R+ AI  L+Y  GLR+SE  SL  ++I  D+  L+I GKG + RIVP+    
Sbjct: 110 NEKTDKGLRDKAIFELMYSSGLRVSEICSLKIEDIFFDEKYLKICGKGKRERIVPINDKA 169

Query: 207 RKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              +  Y        +       LF   RG  ++     + +++  +  G+  +   HTL
Sbjct: 170 LDILKRYIQTSRVVMVKGKKTSELFLNFRGDKISRVGIWKIVKEAMKKSGIEKNVYPHTL 229

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           RHSFATHL+ +G DLRS+Q +LGH  ++TT+IYT+V+S +    + +     HP  T+  
Sbjct: 230 RHSFATHLIQHGADLRSVQRMLGHSDITTTEIYTHVDSTHLKKQIAK-----HPKYTKHT 284

Query: 326 KKN 328
           ++N
Sbjct: 285 RQN 287


>gi|269214488|ref|ZP_05986672.2| tyrosine recombinase XerC [Neisseria lactamica ATCC 23970]
 gi|269209617|gb|EEZ76072.1| tyrosine recombinase XerC [Neisseria lactamica ATCC 23970]
          Length = 334

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 86/313 (27%), Positives = 145/313 (46%), Gaps = 13/313 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
                  +L+N+  E G S+ T+ +Y  D  +    LA    E       + LS  +  A
Sbjct: 35  FAAHFDAYLENIVRE-GKSEHTVAAYRRDLEELFALLAQMPSEAEG-GVPQDLSRRDFTA 92

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            + +   + +  R+L R LS  + +  +L KR +        +   K+   +P+AL ++ 
Sbjct: 93  ALRRLSQRGLNARTLARKLSSWRQYCAWLVKRGLMCADPTAGISPPKQPQRIPKALPQEW 152

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++D  +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GK
Sbjct: 153 LNRMLDLPV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGK 208

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R VPL     +A+  Y  L     +      LF G  G  L+    Q+ + Q    
Sbjct: 209 GRKQRQVPLTGKSAEALKNYLPLRQTASDGK---ALFTGRNGTRLSQRQIQKRLAQWAAI 265

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G     + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +
Sbjct: 266 NGDGRHVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARL 321

Query: 314 YDQTHPSITQKDK 326
           YD+ HP   +++K
Sbjct: 322 YDEAHPRAKRQEK 334


>gi|257085103|ref|ZP_05579464.1| phage integrase [Enterococcus faecalis Fly1]
 gi|256993133|gb|EEU80435.1| phage integrase [Enterococcus faecalis Fly1]
 gi|315168954|gb|EFU12971.1| tyrosine recombinase XerC [Enterococcus faecalis TX1341]
          Length = 299

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 98/325 (30%), Positives = 163/325 (50%), Gaps = 30/325 (9%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK-IT 59
           ME  N PE+           + + L +ERG S+ T ++Y+ D + F  FL     +  +T
Sbjct: 1   MEEKNWPEL-----------FARYLIVERGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLT 49

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           ++ +      ++RA++S+   Q+    S+ R ++ ++SF ++L K +   E+    +   
Sbjct: 50  VEHL------DVRAYLSELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMK 103

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           KK   LPR   EK+   L +     ++   + +D RN A+L +LYG G+R+SE  +LT  
Sbjct: 104 KKQLRLPRFFYEKEMDALFE-----SAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVD 158

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGK 236
            +    S L + GKG+K R VP     + A+ +Y +     L    Q     +F    G+
Sbjct: 159 AVDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGRALLMTKYQKKHPYIFVNHHGE 218

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            + P   +  + QL +   L      H LRH+FATHLL+NG D+R++Q +LGH  LSTTQ
Sbjct: 219 QITPTGIEYVLNQLIKKSSLNAEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQ 278

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSI 321
           IY +V  ++    + + Y   HP  
Sbjct: 279 IYAHVTKES----LQKNYRTFHPRA 299


>gi|145633727|ref|ZP_01789452.1| tyrosine recombinase [Haemophilus influenzae 3655]
 gi|144985386|gb|EDJ92213.1| tyrosine recombinase [Haemophilus influenzae 3655]
          Length = 295

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 93/312 (29%), Positives = 151/312 (48%), Gaps = 17/312 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +L     +   L IER +S  TL +Y+      +  LA     +  I    Q++ + +R 
Sbjct: 1   MLTALNRYWDYLRIERQMSPHTLTNYQHQLDATIKILA-----QQDIYAWAQVTPSVVRF 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            +++ + Q + ++SL   LS ++ FL +L ++     +    +   K+   LP+ ++ +Q
Sbjct: 56  ILAESKKQGLKEKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGKHLPKNMDGEQ 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+       +   + ID R+ AIL L+Y  GLR+SE   L   +I      +R+ GK
Sbjct: 116 VQQLL------ANDSKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R+VP       AI E+  +    L       LF    G  ++    Q+ +      
Sbjct: 170 GNKERVVPFGRYASHAIQEWLKVR--ALFNPKDEALFVSQLGNRISHRAIQKRLETWGIR 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL      H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    + E+
Sbjct: 228 QGLNSHLNPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEV 283

Query: 314 YDQTHPSITQKD 325
           YDQ HP   +K 
Sbjct: 284 YDQAHPRAKRKK 295


>gi|256959059|ref|ZP_05563230.1| integrase [Enterococcus faecalis DS5]
 gi|257079090|ref|ZP_05573451.1| phage integrase [Enterococcus faecalis JH1]
 gi|294781639|ref|ZP_06746975.1| tyrosine recombinase XerC [Enterococcus faecalis PC1.1]
 gi|307270938|ref|ZP_07552221.1| tyrosine recombinase XerC [Enterococcus faecalis TX4248]
 gi|256949555|gb|EEU66187.1| integrase [Enterococcus faecalis DS5]
 gi|256987120|gb|EEU74422.1| phage integrase [Enterococcus faecalis JH1]
 gi|294451335|gb|EFG19801.1| tyrosine recombinase XerC [Enterococcus faecalis PC1.1]
 gi|306512436|gb|EFM81085.1| tyrosine recombinase XerC [Enterococcus faecalis TX4248]
 gi|315037059|gb|EFT48991.1| tyrosine recombinase XerC [Enterococcus faecalis TX0027]
          Length = 299

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 98/325 (30%), Positives = 163/325 (50%), Gaps = 30/325 (9%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK-IT 59
           ME  N PE+           + + L +ERG S+ T ++Y+ D + F  FL     +  +T
Sbjct: 1   MEEKNWPEL-----------FARYLIVERGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLT 49

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           ++ +      ++RA++S+   Q+    S+ R ++ ++SF ++L K +   E+    +   
Sbjct: 50  VEHL------DVRAYLSELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMK 103

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           KK   LPR   EK+   L +     ++   + +D RN A+L +LYG G+R+SE  +LT  
Sbjct: 104 KKQLRLPRFFYEKEMDALFE-----SAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVD 158

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGK 236
            +    S L + GKG+K R VP     + A+ +Y +     L    Q     +F    G+
Sbjct: 159 AVDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENSRALLMTKYQKKHPYVFVNHHGE 218

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            + P   +  + QL +   L      H LRH+FATHLL+NG D+R++Q +LGH  LSTTQ
Sbjct: 219 QITPTGIEYVLNQLIKKSSLNAEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQ 278

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSI 321
           IY +V  ++    + + Y   HP  
Sbjct: 279 IYAHVTKES----LQKNYRTFHPRA 299


>gi|114561848|ref|YP_749361.1| tyrosine recombinase XerD [Shewanella frigidimarina NCIMB 400]
 gi|114333141|gb|ABI70523.1| tyrosine recombinase XerD [Shewanella frigidimarina NCIMB 400]
          Length = 305

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 94/304 (30%), Positives = 151/304 (49%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L +L    GLS  TL SY  D +    ++          + + Q+    +R ++++
Sbjct: 16  INQFLDDLWSTNGLSDNTLVSYRTDLQNAERYILTKG------KDLLQVDQALLRDYLAE 69

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  ++    S  R LS ++ F  YL  ++  ++     +++ K    LP  L+E Q    
Sbjct: 70  RFDKQFAKSSTARLLSSLRRFYAYLLVKQKISQDPTALIKSPKLVRQLPDTLSEAQI--- 126

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
             + LL   +    I+ R+ A+L LLY  GLR++E +SLT + I   Q  +R+ GKG K 
Sbjct: 127 --DNLLSEPNIDDPIEHRDKAMLELLYATGLRVTELVSLTMEQISLRQGLVRVMGKGGKE 184

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL      A+ +Y      +L ++     LF   RG+ +    F   I+      G+
Sbjct: 185 RLVPLGELAITAVEQYIKFARAELLSMKQSDVLFPSRRGQMMTRQTFWHRIKLYAARAGI 244

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + +++ Q
Sbjct: 245 QCHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHV----AKVRLQQLHSQ 300

Query: 317 THPS 320
            HP 
Sbjct: 301 HHPR 304


>gi|302879884|ref|YP_003848448.1| tyrosine recombinase XerC [Gallionella capsiferriformans ES-2]
 gi|302582673|gb|ADL56684.1| tyrosine recombinase XerC [Gallionella capsiferriformans ES-2]
          Length = 317

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 104/310 (33%), Positives = 159/310 (51%), Gaps = 21/310 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q +L  L  ER  SKLT +SY  D             E  T   + +L  + IR +I++
Sbjct: 27  LQGYLAWLLGERRYSKLTAESYARDLAHLF--------ELSTGLALNELKVSHIRRYIAQ 78

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             +  +G RSL R LS  + F  YL +    T++  + +R  K + +LP+ L+  QA+ +
Sbjct: 79  LHSSGLGGRSLARLLSAWRGFYNYLLRDHGFTDNPCVGLRAPKSARALPQVLSPDQAVRM 138

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGD 195
           VD               R+ A+  L Y  GLR+ E + L  ++I  D     +R+ GKG 
Sbjct: 139 VDLP------TDAPDSIRDKAMFELFYSSGLRLMELIDLDAESIRSDITAGEVRVTGKGH 192

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RIVPL      A+ E+  + P   N+  +  LF G RG  ++P V Q  ++Q     G
Sbjct: 193 KTRIVPLGGCAISALHEWLAVRPTLANIG-ERALFVGARGARISPRVVQLRMKQWGIKQG 251

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  S   H LRHSFATH+L + GDLR++Q +LGH  +STTQ+YT+++ +    ++ +IYD
Sbjct: 252 ITSSVHPHMLRHSFATHVLQSSGDLRAVQEMLGHASISTTQVYTHLDFQ----YLSKIYD 307

Query: 316 QTHPSITQKD 325
             HP   +K 
Sbjct: 308 AAHPRAKRKP 317


>gi|304389555|ref|ZP_07371517.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|315656798|ref|ZP_07909685.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|304327108|gb|EFL94344.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|315492753|gb|EFU82357.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 318

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 90/331 (27%), Positives = 151/331 (45%), Gaps = 23/331 (6%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M     P+ +  ELL   Q +L  L +ERG S  T+ +Y  D R+++ FL         +
Sbjct: 1   MGSRPAPDFMCPELLNP-QPYLDYLAVERGASPHTVAAYTRDLRRYITFLIAN-----GV 54

Query: 61  QTIRQLSYTEIRAFISKRRTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
            ++ +++   + +F             +   S +R ++ ++S+ +Y  +  +   +    
Sbjct: 55  NSLDEVTLPVLESFARALEAGFGDYAAVAPSSARRVIASVRSWHRYAYETGVVRANPTKG 114

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +   K    LP  L  ++  TL++      S        R+ A+L  LY  G RISEA++
Sbjct: 115 IAPAKVGAHLPTVLTVEEVQTLLE----AASAPGDDNALRDRALLEFLYATGARISEAVN 170

Query: 176 LTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFR 231
           L   +I  D+    +R+ GKG K R+  L    + A+  Y       L      Q  +F 
Sbjct: 171 LAVDDINLDEEIPLVRLFGKGRKERLSMLGHLAKDALEAYLVRVRPRLAEKGRSQGRVFL 230

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
              G+PL+       I+   +   + +    HTLRH FATHLL  G D+R++Q +LGH  
Sbjct: 231 NTLGRPLSRQSAWAIIQAAAQRAQITVPVGPHTLRHCFATHLLQGGADVRAVQELLGHAS 290

Query: 292 LSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           ++TTQIYT V++    D + E+Y   HP   
Sbjct: 291 VTTTQIYTKVSN----DMLREVYASAHPRAR 317


>gi|314923769|gb|EFS87600.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL001PA1]
 gi|314966217|gb|EFT10316.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL082PA2]
 gi|315095107|gb|EFT67083.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL060PA1]
 gi|315104336|gb|EFT76312.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL050PA2]
 gi|327328115|gb|EGE69884.1| putative tyrosine recombinase XerC [Propionibacterium acnes
           HL103PA1]
          Length = 300

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/308 (26%), Positives = 146/308 (47%), Gaps = 10/308 (3%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L    +++  +L   R  S  T++ Y  D    +     + ++ +      ++  +++RA
Sbjct: 3   LTVPVEDFCDHLLALRR-SPNTIRGYRADLIDLMSHAYSHGDDILG-----RIGISQVRA 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++  R       +++R  S  + F ++     + +      + ++K    LP  L   Q
Sbjct: 57  WLADTRVAGASAATMQRRWSAARVFFRWAANEGLVSADPTATLNSVKVPKRLPATLGVDQ 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           A  ++D  +    H+     AR++AIL +LYG GLR+ E   L   ++   + T+++ GK
Sbjct: 117 ARHILDEAVAQARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRHTVKVTGK 176

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GDK R VP+     +AI  +       +  +    LF G RG+ ++  V +R +    R 
Sbjct: 177 GDKERTVPMGAPALRAIDTWLPRREEWVGPHSGQALFLGERGRRIDQRVVRRVVHTHLRA 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                    H LRH+ ATHLL  G DLR++Q +LGH  L+TTQIYT+V+++     +   
Sbjct: 237 EPDSPDLGPHGLRHAMATHLLEGGADLRTVQDMLGHKSLATTQIYTHVSTER----LRTA 292

Query: 314 YDQTHPSI 321
           + Q HP  
Sbjct: 293 FRQAHPRA 300


>gi|306822461|ref|ZP_07455839.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679]
 gi|309801460|ref|ZP_07695587.1| tyrosine recombinase XerD [Bifidobacterium dentium JCVIHMP022]
 gi|304554006|gb|EFM41915.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679]
 gi|308221975|gb|EFO78260.1| tyrosine recombinase XerD [Bifidobacterium dentium JCVIHMP022]
          Length = 318

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 85/322 (26%), Positives = 151/322 (46%), Gaps = 24/322 (7%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + +L ++++ERGLSK T+ +Y  D  +++ +L      +  I  +  ++   +  ++
Sbjct: 6   RLVRQFLAHIDVERGLSKATVCAYGSDLHKYVSWL-----HEQGIHDLDDVTTRHVEEYV 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +         RS  R L+ I +F ++     +  +     ++  K +++LP  L+  + +
Sbjct: 61  ASLDDSGESARSKARRLASIHAFHRFALSEHVVHDDVASQVKAPKGASTLPDVLSVDEVM 120

Query: 136 TLVDNVLLHTSHE----------TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
            L+D++ L   H+             +  R+ A+L  +Y  G R+SEA  +   +I  D 
Sbjct: 121 RLMDSIPLSRHHDGKQGHGDAAADDPVMLRDKALLEFMYATGSRVSEACGVDLDDIDLDD 180

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-----QLPLFRGIRGKPLNP 240
              R+ GKG K R+VP+     +A+  Y       L            +F   RGK L+ 
Sbjct: 181 KVARLMGKGSKQRLVPVGSFACEALRRYLRFGRPALQSKSKGAAEHRAVFLNKRGKRLSR 240

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                 IR       +      HTLRHSFATHL+  G D+R++Q +LGH  ++TTQIYT+
Sbjct: 241 QSVWEIIRTAGERAHITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTH 300

Query: 301 VNSKNGGDWMMEIYDQTHPSIT 322
           V+ +N    ++E Y   HP   
Sbjct: 301 VSPEN----LIEAYLTAHPRAR 318


>gi|301169393|emb|CBW28993.1| site-specific tyrosine recombinase [Haemophilus influenzae 10810]
          Length = 295

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 92/312 (29%), Positives = 152/312 (48%), Gaps = 17/312 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +L     +   L IER +S  T+ +Y+      +  LA     +  I +  Q++ + +R 
Sbjct: 1   MLTALNRYWDYLRIERQMSPHTITNYQHQLDATIKILA-----QQDIHSWTQVTPSVVRF 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            +++ + Q + ++SL   LS ++ FL +L ++     +    +   K+   LP+ ++ +Q
Sbjct: 56  ILAESKKQGLKEKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQ 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+       +   + ID R+ AIL L+Y  GLR+SE   L   +I      +R+ GK
Sbjct: 116 IQQLL------ANDSKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R+VP       AI E+  +    L       LF    G  ++    Q+ +      
Sbjct: 170 GNKERVVPFGRYASHAIQEWLKVR--ALFNPKDEALFVSQLGNRISHRAIQKRLETWGIR 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL      H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    + E+
Sbjct: 228 QGLNSHLNPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEV 283

Query: 314 YDQTHPSITQKD 325
           YDQ HP   +K 
Sbjct: 284 YDQAHPRAKRKK 295


>gi|260910520|ref|ZP_05917188.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635362|gb|EEX53384.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 304

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 85/308 (27%), Positives = 158/308 (51%), Gaps = 16/308 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +++ L++ER LS+ T+++Y  D R  L ++ ++  +      +  +   ++  F + 
Sbjct: 12  VKAYMRYLKLERNLSQNTIEAYRNDLRWLLAYVNYHGLK------VEAVKLEDLDNFSAS 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q+I  RS  R LSG++SF K+L             + +    N+LP  L+  +   L
Sbjct: 66  LHDQRITPRSQARILSGVRSFFKFLLLDGFIDADPTELLVSPHVRNALPDVLSTAEVDRL 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
             ++ L     +KW   RN AI+ +L+ CGLR+SE ++L   N+  ++  +R+ GKGDK 
Sbjct: 126 EASIDL-----SKWEGQRNRAIIEVLFSCGLRVSELVNLKLSNLYVEEKFVRVTGKGDKE 180

Query: 198 RIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  ++       +    +  +F   RG  L   +    I++     G+
Sbjct: 181 RLVPISSRALDELNAWFADRNAMRIKPGEEDYVFLNRRGAHLTRTMILIMIKRQAVAAGI 240

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HTLRHSFAT LL  G DL +IQ+++GH  ++TT+IYT++++ +    + E   +
Sbjct: 241 TKTISPHTLRHSFATALLEGGADLIAIQAMMGHEDIATTEIYTHIDTSS----LREEITK 296

Query: 317 THPSITQK 324
            HP   ++
Sbjct: 297 HHPRNKKR 304


>gi|217967906|ref|YP_002353412.1| integrase family protein [Dictyoglomus turgidum DSM 6724]
 gi|217337005|gb|ACK42798.1| integrase family protein [Dictyoglomus turgidum DSM 6724]
          Length = 300

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 83/319 (26%), Positives = 149/319 (46%), Gaps = 19/319 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++ +L +E +N++  L  ER  S  TL+SY  D   F  +           + +   +  
Sbjct: 1   MNLDLKREIENYINYLRFERNYSPNTLRSYLRDLLDFYKYCKE--------KDLDFTNKR 52

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            IR++I     +   + +  R +  ++SF +YL   +   E   + +   K    LP+ L
Sbjct: 53  NIRSYIQFIAQKGYKNSTFVRKVISLRSFFEYLLTFEKIKEDLTVFIPTPKIEKKLPQFL 112

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  +   L+     ++      I  R+ AI+  LY  G+R+SE + +  ++I  +   +R
Sbjct: 113 SIDEVRKLL-----NSPSLDNLIGIRDRAIIETLYATGIRVSELVGINEEDINWNYGEIR 167

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GK  K R+V +     K +  Y D     L    +   F   +G  ++    +  I++
Sbjct: 168 VFGKRAKERVVIVGEETLKILQLYKDYVRPKLLKKPEKAFFLNAKGGRISDRGVRMIIKK 227

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +        + HTLRH+FATHLL  G DLR +Q +LGH R+STTQIYT++ +    D 
Sbjct: 228 YTKEFN--KKISPHTLRHTFATHLLEGGADLRYVQELLGHVRISTTQIYTHLTT----DQ 281

Query: 310 MMEIYDQTHPSITQKDKKN 328
           +   Y  +HP   +K+++ 
Sbjct: 282 IRRTYTVSHPRAIKKEREE 300


>gi|313673072|ref|YP_004051183.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939828|gb|ADR19020.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672]
          Length = 300

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 89/313 (28%), Positives = 160/313 (51%), Gaps = 17/313 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L++   ++   L+IE+  S  T++SY  D  + + F+   +        I+++ +  +R 
Sbjct: 3   LIEAVDSFGNFLKIEKNASDHTIRSYMNDLVELINFVKDESI------DIKEIDFFALRG 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +I+    + +   S++R +S IKSF K+L ++    E++   ++  KK   L +  N   
Sbjct: 57  YITTLYDRSLSKSSIERKISTIKSFFKFLTQKGYLEENHARMLKFPKKEKKLFKVFNIDD 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
             TL++        +      R++ ++ L+YG G+R+SE + +   +I      +R++GK
Sbjct: 117 LFTLLE-----LPDKNTPQGIRDALLMELMYGTGVRVSELVGIKIDDIDFQGLRVRVRGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G K R++PL       I +Y                 LF    G  L+    +R + +  
Sbjct: 172 GKKERMIPLAEFHIDFIKKYLATRDDIPKSRTIKTDKLFINKNGTSLSDRSVRRIVEKYL 231

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +  GLPL  + H+ RHSFATH+L +G DLR+IQS+LGH  LSTTQ YT++N  +    ++
Sbjct: 232 KMAGLPLDFSPHSFRHSFATHMLESGADLRTIQSLLGHSSLSTTQKYTHLNLSD----IL 287

Query: 312 EIYDQTHPSITQK 324
           +IYD+ HP   ++
Sbjct: 288 KIYDEAHPFARKR 300


>gi|256832498|ref|YP_003161225.1| tyrosine recombinase XerD [Jonesia denitrificans DSM 20603]
 gi|256686029|gb|ACV08922.1| tyrosine recombinase XerD [Jonesia denitrificans DSM 20603]
          Length = 310

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 90/314 (28%), Positives = 147/314 (46%), Gaps = 25/314 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q +LQ+L +ERG+S  TL +Y  D  ++L +L+          ++  ++ + I  F+  
Sbjct: 10  VQGYLQHLLVERGVSPNTLAAYRRDLARYLDYLSHRE------LSLHSVTQSTIDDFLVA 63

Query: 78  RRTQKIGDRS----LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            R   +G       + R L+ ++   +Y +   +      +++R  K    LP  L+   
Sbjct: 64  LREGSLGQSLSQSSVSRHLASLRGLHRYAEAEGVVAGDPAVSVRPPKLPQRLPDVLSTHD 123

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL--RIQ 191
              L+      T      +  R+ A+L  LY  G RISE + L   +++ D   +  R+ 
Sbjct: 124 VERLL-----TTPPLDSAVGLRDRALLEFLYATGARISEVVGLDRDDVIADDGFVVARVL 178

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQ 249
           GKG K R+VP+      A+  Y      +L         LF   RG+ L+       +R 
Sbjct: 179 GKGHKERLVPVGSCAYDALNAYLVRARPELAGAGVGTPALFLNTRGRRLSRQSAFGVVRS 238

Query: 250 LRRYLGLP--LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
             R   +P   S + HTLRH FATH+LS G D+R +Q +LGH  ++TTQIYT+V+     
Sbjct: 239 AARLAAIPGAESVSPHTLRHCFATHMLSGGADIRVVQELLGHASVTTTQIYTHVS----A 294

Query: 308 DWMMEIYDQTHPSI 321
           D + E+Y  +HP  
Sbjct: 295 DALREVYASSHPRA 308


>gi|224537518|ref|ZP_03678057.1| hypothetical protein BACCELL_02397 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520831|gb|EEF89936.1| hypothetical protein BACCELL_02397 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 316

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 89/311 (28%), Positives = 149/311 (47%), Gaps = 16/311 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + Q L++E+ LS  TL +Y  D  + L FL     + ++      ++  +++ F + 
Sbjct: 17  IRKYQQYLKLEKALSANTLDAYLTDLDKLLRFLKAENIDMLS------VTLDDLQRFAAG 70

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I  RS  R +SGIKSF  +L       +     +   K    LP  L  ++  T+
Sbjct: 71  LHDIGIHPRSQARIMSGIKSFFHFLIMADYREDDPSELLEGPKIGFKLPEVLTVEEIDTI 130

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +      T   +K    RN AIL  LY CGLR+SE  +L    +  D+  ++++GKG K 
Sbjct: 131 I-----ATVDMSKKEGQRNRAILETLYSCGLRVSELCNLKLSELYFDEGFIKVEGKGSKQ 185

Query: 198 RIVPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+ P   K I  +        +    +  +F    G  ++  +    I++L    G+
Sbjct: 186 RLVPISPRAIKEIKYWLLDRNLGKIKKGFEDYVFLARWGNSISRIMVFHLIKELAEKAGI 245

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++       ++E    
Sbjct: 246 TKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIE---- 301

Query: 317 THPSITQKDKK 327
            HP   +  K+
Sbjct: 302 HHPRNIKYRKE 312


>gi|171742548|ref|ZP_02918355.1| hypothetical protein BIFDEN_01661 [Bifidobacterium dentium ATCC
           27678]
 gi|283456366|ref|YP_003360930.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium dentium
           Bd1]
 gi|171278162|gb|EDT45823.1| hypothetical protein BIFDEN_01661 [Bifidobacterium dentium ATCC
           27678]
 gi|283103000|gb|ADB10106.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium dentium
           Bd1]
          Length = 318

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 85/322 (26%), Positives = 151/322 (46%), Gaps = 24/322 (7%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + +L ++++ERGLSK T+ +Y  D  +++ +L      +  I  +  ++   +  ++
Sbjct: 6   RLVRQFLAHIDVERGLSKATVCAYGSDLHKYVSWL-----HEQGIHDLDDVTTRHVEEYV 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +         RS  R L+ I +F ++     +  +     ++  K +++LP  L+  + +
Sbjct: 61  ASLDDSGESARSKARRLASIHAFHRFALSEHVVHDDVAAQVKAPKGASTLPDVLSVDEVM 120

Query: 136 TLVDNVLLHTSHE----------TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
            L+D++ L   H+             +  R+ A+L  +Y  G R+SEA  +   +I  D 
Sbjct: 121 RLMDSIPLSRHHDGKQGHGDAAADDPVMLRDKALLEFMYATGSRVSEACGVDLDDIDLDD 180

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-----QLPLFRGIRGKPLNP 240
              R+ GKG K R+VP+     +A+  Y       L            +F   RGK L+ 
Sbjct: 181 KVARLMGKGSKQRLVPVGSFACEALRRYLRFGRPVLQSKSKGAAEHRAVFLNKRGKRLSR 240

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                 IR       +      HTLRHSFATHL+  G D+R++Q +LGH  ++TTQIYT+
Sbjct: 241 QSVWEIIRTAGERAHITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTH 300

Query: 301 VNSKNGGDWMMEIYDQTHPSIT 322
           V+ +N    ++E Y   HP   
Sbjct: 301 VSPEN----LIEAYLTAHPRAR 318


>gi|111017946|ref|YP_700918.1| site-specific tyrosine recombinase XerD [Rhodococcus jostii RHA1]
 gi|110817476|gb|ABG92760.1| tyrosine recombinase [Rhodococcus jostii RHA1]
          Length = 308

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 84/321 (26%), Positives = 147/321 (45%), Gaps = 27/321 (8%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++  ++L +L +ERG ++ TL SY  D  ++  FLA        +  I ++   ++  
Sbjct: 3   IARQVDSYLDHLAVERGAARNTLGSYRRDLERYTQFLADRE-----LTDIDRIREQDVSD 57

Query: 74  FISKRRTQKIGDRSLKRSL------------SGIKSFLKYLKKRKITTESNILNMRNLKK 121
           F+   R+         R L              ++ F ++     +T      ++R    
Sbjct: 58  FVIALRSGDP-----NRELPPLAASSAARALIAVRGFHRFAAAEGMTAVDVARDVRPPSP 112

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           +  LP++L   + L L++ V      +      R+ A+L LLY  G RISEA+ L   ++
Sbjct: 113 AKRLPKSLPVNEVLALLEAVGGSGPADGPR-AVRDRALLELLYSTGARISEAVGLDVDDV 171

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
             +  ++ ++GKG K R+VP+     +++  Y       L       LF  +RG  L+  
Sbjct: 172 DTETRSVLLRGKGGKQRVVPVGRPAVESLDAYLIRGRPALASRGTPALFLNVRGGRLSRQ 231

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              + ++      G+  + + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V
Sbjct: 232 SAWKVLQAAADAAGISSAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLV 291

Query: 302 NSKNGGDWMMEIYDQTHPSIT 322
                   + E++   HP   
Sbjct: 292 T----VGALREVWAGAHPRAR 308


>gi|332527817|ref|ZP_08403855.1| tyrosine recombinase XerC subunit [Rubrivivax benzoatilyticus JA2]
 gi|332112212|gb|EGJ12188.1| tyrosine recombinase XerC subunit [Rubrivivax benzoatilyticus JA2]
          Length = 313

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 92/322 (28%), Positives = 151/322 (46%), Gaps = 21/322 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +   L  + Q WL +L +ER L+  TL  Y     +     A    E      +R     
Sbjct: 1   MDATLPDDVQRWLDHLGVERRLAPRTLALYRDALGRLAASAAADGVE------LRAAQPH 54

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R ++++ RT  +  RS+   LS  +   ++  +  +   + +  ++  K    LP+AL
Sbjct: 55  HVRRWMAQLRTAGLAPRSIALVLSAWRGLYRWWGREGLVPANPVDGLKAPKTGKPLPKAL 114

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL- 188
              QA+ L ++           + AR+ AI+ LLYGCGLRI E L+L           + 
Sbjct: 115 PVDQAVALAEH---ENEDGDARLAARDHAIVELLYGCGLRIGELLALDLAPSAGAAGWID 171

Query: 189 ------RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
                  + GKG K R VP+     +A+  +  +    L    +  LF   RG+ L+ G 
Sbjct: 172 AEDASAHVLGKGRKRRSVPVGAKALEALAAWLAVR-GQLAAAGEPALFVSRRGERLSQGA 230

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +  ++Q+    GLP     H LRHS+A+HLL + GDLR++Q +LGH  +STTQ+YT ++
Sbjct: 231 LRARLKQIALQAGLPTHVHPHMLRHSYASHLLQSSGDLRAVQELLGHASISTTQVYTQLD 290

Query: 303 SKNGGDWMMEIYDQTHPSITQK 324
            ++    +   YD  HP   +K
Sbjct: 291 FQH----LARAYDAAHPRAKRK 308


>gi|326791364|ref|YP_004309185.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326542128|gb|ADZ83987.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 296

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 156/303 (51%), Gaps = 14/303 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L+  +  S  T+QSYE D R F      Y EE+  I+ I+ L+  +I+ ++   +
Sbjct: 7   SFLYYLKHIKRASDNTVQSYERDLRYF----ERYVEEQGKIE-IQSLTDQQIKVYLEHMK 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            ++    ++ R+L+ I++F +YL K ++  E+    +   K     PR L+++Q  +L++
Sbjct: 62  DEEKSTATISRTLASIRAFCQYLVKEQVLNENPARLIALPKIEKKAPRILSQEQISSLLE 121

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                  ++      R+ A+L LLY  G+R+SE +SL   +I   Q  +  +    K R 
Sbjct: 122 Q-----PNKKDTKGIRDRAMLELLYATGIRVSELISLKTTDINLQQGYIICRD-AQKERT 175

Query: 200 VPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +P+  S   A+  Y  ++    +       LF    G P+    F + ++       +  
Sbjct: 176 IPIGKSAISALNMYLGEVRHILIRSANDKTLFVNCNGYPMTRQGFWKILKTYANAAHIQG 235

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             T H LRHSFA HL+ NG +L+S+Q +LGH  +STTQ+Y ++N +   + +M++Y++TH
Sbjct: 236 EITPHMLRHSFAAHLVQNGANLKSVQQMLGHSDISTTQVYMHLNKE--TEELMDVYNKTH 293

Query: 319 PSI 321
           P  
Sbjct: 294 PRA 296


>gi|255532069|ref|YP_003092441.1| tyrosine recombinase XerD [Pedobacter heparinus DSM 2366]
 gi|255345053|gb|ACU04379.1| tyrosine recombinase XerD [Pedobacter heparinus DSM 2366]
          Length = 299

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 83/303 (27%), Positives = 151/303 (49%), Gaps = 15/303 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++   L++ER LS  ++++Y  D  +   +     +       +++++  +++ F+S   
Sbjct: 9   SFKNYLKLERSLSGNSIEAYLGDLNKLSQYFESVDQTPQ----VKEITGDDLKHFVSWIN 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +   +  R +SG+K+F  +L   +I T      + + ++   LP  L+ ++      
Sbjct: 65  ELGMLPSTQARVVSGLKAFFSFLMLEEIITTDPSALLESPRQVKHLPDTLSIQEI----- 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           N ++     +K    RN AIL  LYGCGLR+SE  +L   ++ ++   +RI GKG+K R+
Sbjct: 120 NGMIGAIDASKPEGMRNKAILETLYGCGLRVSELSNLKISDVFEENEFIRIFGKGNKERL 179

Query: 200 VPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           VP+  +  K I  Y         +    +  +F    G  L+       I+ L    G+ 
Sbjct: 180 VPIGQTALKYINIYLRESRVHVPIKKGHEDYIFLNRSGTRLSRISVFSIIKALALKSGIK 239

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            S + HT RHSFATHL+  G DLR++Q +LGH  ++TT+IYT+++     D++  I  + 
Sbjct: 240 KSISPHTFRHSFATHLIEGGADLRAVQEMLGHSSITTTEIYTHLD----RDYLRGIITEF 295

Query: 318 HPS 320
           HP 
Sbjct: 296 HPR 298


>gi|169797492|ref|YP_001715285.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE]
 gi|213155694|ref|YP_002317739.1| tyrosine recombinase XerD [Acinetobacter baumannii AB0057]
 gi|215484928|ref|YP_002327167.1| tyrosine recombinase XerD [Acinetobacter baumannii AB307-0294]
 gi|260556384|ref|ZP_05828603.1| tyrosine recombinase XerD [Acinetobacter baumannii ATCC 19606]
 gi|301346533|ref|ZP_07227274.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB056]
 gi|301512500|ref|ZP_07237737.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB058]
 gi|301594843|ref|ZP_07239851.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB059]
 gi|332851492|ref|ZP_08433489.1| tyrosine recombinase XerD [Acinetobacter baumannii 6013150]
 gi|332866808|ref|ZP_08437212.1| tyrosine recombinase XerD [Acinetobacter baumannii 6013113]
 gi|169150419|emb|CAM88316.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE]
 gi|213054854|gb|ACJ39756.1| tyrosine recombinase XerD [Acinetobacter baumannii AB0057]
 gi|213986144|gb|ACJ56443.1| tyrosine recombinase XerD [Acinetobacter baumannii AB307-0294]
 gi|260410439|gb|EEX03738.1| tyrosine recombinase XerD [Acinetobacter baumannii ATCC 19606]
 gi|332729945|gb|EGJ61276.1| tyrosine recombinase XerD [Acinetobacter baumannii 6013150]
 gi|332734416|gb|EGJ65536.1| tyrosine recombinase XerD [Acinetobacter baumannii 6013113]
          Length = 306

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 92/320 (28%), Positives = 148/320 (46%), Gaps = 19/320 (5%)

Query: 2   EGNNLPEIVS-FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           +   +P  V   E L   Q +   L  +  +S  T  +Y  D  Q             T 
Sbjct: 4   KKPRIPSPVQIPEHLSFLQGFRDYLVAQ-TVSPHTRNAYLSDLIQCSELHKKNRLPDWTS 62

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             I  +        + +        RS+ R LS ++ F K+L+++K+ +++ +    + K
Sbjct: 63  DDISDV--------LIELTKVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPK 114

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
              +LP+ L+E+    L+          T  +  R+ A+  +LY CGLR+SE L+L  + 
Sbjct: 115 IGRALPKDLSEEDVEALI-----QAPDITTALGLRDRAMFEVLYACGLRVSELLNLRLEL 169

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I   Q  LRI GKG+K R+VPL       +  Y +     L  +    LF    G  ++ 
Sbjct: 170 INLKQGYLRITGKGNKERLVPLGQYACDWVERYLNEARPQLYKSSTDYLFLTQHGGIMSR 229

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             F   I++      +    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+
Sbjct: 230 QNFWYAIKRYALQANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTH 289

Query: 301 VNSKNGGDWMMEIYDQTHPS 320
           V        M +++++ HP 
Sbjct: 290 VAQVR----MQQLHEKHHPR 305


>gi|153004979|ref|YP_001379304.1| tyrosine recombinase XerD [Anaeromyxobacter sp. Fw109-5]
 gi|152028552|gb|ABS26320.1| tyrosine recombinase XerD [Anaeromyxobacter sp. Fw109-5]
          Length = 298

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 153/309 (49%), Gaps = 15/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L      ++ ++ +E+GL++ +++ Y  D R+++  L     + + I    ++   EI+A
Sbjct: 4   LEPALDLFVAHVRVEKGLAENSVEGYLRDLRRYVEHL-----DALGIGAWERVGRIEIQA 58

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            + +   + +  RS  R+LS I+S  + L   K+T       +   +    LP  L+  +
Sbjct: 59  HLGELVRRGLSPRSQARALSAIRSLHRLLFAEKLTPVDAGDELDAPRPGRKLPELLSHDE 118

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+      +         R+ A+L LLY  GLR+SE +SL   ++  +   L  +GK
Sbjct: 119 IARLL-----ASPDPRSAAGLRDRAMLELLYATGLRVSELVSLGLNDVNLETRVLVARGK 173

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRR 252
           G+K RIVP+     +A+  Y  +    L    +   LF   RG  L    F + + +  R
Sbjct: 174 GNKERIVPVGAPAAEAVKAYLAVGRERLLRGRRSKDLFVSPRGGRLTRQGFAKLLGRHAR 233

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    + H LRHSFATHLL  G DLR++Q++LGH  +STTQIYT+V+  +    +  
Sbjct: 234 AAGIRRRISPHKLRHSFATHLLEGGADLRAVQAMLGHADVSTTQIYTHVDRSH----VRR 289

Query: 313 IYDQTHPSI 321
           +YD+ HP  
Sbjct: 290 LYDRFHPRA 298


>gi|114328726|ref|YP_745883.1| site-specific tyrosine recombinase XerC [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316900|gb|ABI62960.1| integrase/recombinase (XerC/CodV family) [Granulibacter
           bethesdensis CGDNIH1]
          Length = 300

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 116/306 (37%), Positives = 173/306 (56%), Gaps = 11/306 (3%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           + R++W+  L  E+  + LT ++Y  D   FL FLA +   +  +  + +L  ++ RA++
Sbjct: 5   QARRDWIDWLRDEKRAAPLTCRAYGDDVAAFLGFLATHQGAEPDMAMLGRLGLSDFRAWL 64

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +  G+ +  R L+ I+SF  +L++R     S +  +R  K    LPRAL++ QAL
Sbjct: 65  ASEAVKGAGNATRARHLASIRSFFHFLRQRHALENSALPLLRTPKAKPPLPRALDQTQAL 124

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
                  +  + E  +  AR++A+  LLYGCGLR+ EAL L   +   D  TLRI GKG 
Sbjct: 125 AA--ARDIGEASENPFTQARDTALFALLYGCGLRLGEALGLMVGDSQHD--TLRITGKGG 180

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           + R+VP++PSVR ++ ++    P         PLF G+RG  LNPGV QR +RQ R    
Sbjct: 181 RQRMVPVIPSVRTSLSDWLRFHPV---PEASAPLFVGVRGARLNPGVAQRTLRQFRTLYN 237

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           LP   T H LRHSFATHLL+ G DLR+IQ +LGH  LSTTQ YT V+       ++ ++ 
Sbjct: 238 LPEHATPHALRHSFATHLLAAGADLRAIQDLLGHASLSTTQRYTQVDQAQ----LLAVWQ 293

Query: 316 QTHPSI 321
           + HP  
Sbjct: 294 KAHPRA 299


>gi|301382613|ref|ZP_07231031.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           tomato Max13]
 gi|302063357|ref|ZP_07254898.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           tomato K40]
 gi|302133632|ref|ZP_07259622.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|331017919|gb|EGH97975.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 290

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 89/301 (29%), Positives = 146/301 (48%), Gaps = 17/301 (5%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           +L  ER +S  TL++Y  D  + L +      +K  + +   L    +R+F +++  Q  
Sbjct: 2   HLRSERQVSPHTLEAYRRDLSKVLAYC-----QKARLSSWNDLDIQHLRSFTARQHQQGQ 56

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
             RSL R LS ++ F KYL +  +        +   K    LP+ L+  +   L+D  + 
Sbjct: 57  SSRSLARMLSAVRGFYKYLNREGLCQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGV- 115

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
               E  ++  R+ AI+ LLY  GLR+SE   L    +      +++ GKG K R++P+ 
Sbjct: 116 ----EDDFLAHRDQAIMELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVG 171

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              R+A+  +  L    L       +F   +GK L P   Q  I+       L  +   H
Sbjct: 172 SKARQALETWLPLR--ALTNPQDDAVFVSQQGKRLGPRAVQLRIKTAGER-ELGQNLHPH 228

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +YD  HP   +
Sbjct: 229 MLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAHPRAKR 284

Query: 324 K 324
           K
Sbjct: 285 K 285


>gi|86158112|ref|YP_464897.1| tyrosine recombinase XerD subunit [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774623|gb|ABC81460.1| tyrosine recombinase XerD subunit [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 314

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 90/310 (29%), Positives = 155/310 (50%), Gaps = 15/310 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
            L      +L ++ +E+GL++ ++++Y  D R++L  L     +++ +    ++  +EI+
Sbjct: 19  ALEPALDLFLAHVRVEKGLAENSVEAYGRDLRRYLEHL-----DELGVDAWERVGRSEIQ 73

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           A +++   + +  RS  R+LS I+S  + L   ++T+      + + +    LP  L+  
Sbjct: 74  AHLAELVRRGLSPRSQARALSAIRSLHRLLAAERVTSADPSDEIESPRPGRRLPGLLSHD 133

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L+                R+ A+L LLY  GLR+SE +SL   ++  +   L  +G
Sbjct: 134 EVDRLL-----AAPDVRSAAGIRDRAMLELLYATGLRVSELVSLQLNDVNLETRVLVARG 188

Query: 193 KGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KGDK RIVP+      A+  Y        L+      LF   RG  +    F + + +  
Sbjct: 189 KGDKERIVPVGAPAADAVKAYLAVARERLLHGRRSKDLFVTPRGGRMTRQGFAKILDRCA 248

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R  G+    + H LRHSFATHLL  G DLR++Q +LGH  +STTQIYT+V+  +    + 
Sbjct: 249 RRAGIRRRISPHKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHVDRTH----VK 304

Query: 312 EIYDQTHPSI 321
            +YD+ HP  
Sbjct: 305 RLYDRFHPRA 314


>gi|325963702|ref|YP_004241608.1| tyrosine recombinase XerC subunit [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469789|gb|ADX73474.1| tyrosine recombinase XerC subunit [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 308

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 94/322 (29%), Positives = 146/322 (45%), Gaps = 15/322 (4%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ME   LP     EL      + + L  ER +S  TL+ Y  D R  L   +    ++   
Sbjct: 1   MENPELP----VELAGALDAFARYLAAERAVSPHTLRGYVGDVRGLLSHASIEGAKR--- 53

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             +  L     R ++  +        +L R  + ++ F  +    +       L ++  K
Sbjct: 54  --LEDLELGTFRRWLGAQSQAGAARTTLARRSASVRVFTAWALGEERIVADPALRLKAPK 111

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +  SLP  L+  Q   L+   L   + E   +  RN AI+ LLY  G+R+ E   L   +
Sbjct: 112 REASLPGVLHSGQLARLL-AGLAQAAEEGAPLALRNRAIVELLYATGVRVGELAGLDIDD 170

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLN 239
           +  D+ TLR+ GKG+K R VP       A+ ++       +  +     LF G+RG  ++
Sbjct: 171 LDPDRRTLRVIGKGNKERTVPYGVPAALAVDDWLRRGRPLVARSTSGQALFLGMRGGRVD 230

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               +  +  L + LG   ++  H LRHS ATHLL  G DLR++Q ILGH  L+TTQIYT
Sbjct: 231 QRQVRTMVNGLFKELGDTSASGPHALRHSAATHLLDGGADLRAVQEILGHSSLATTQIYT 290

Query: 300 NVNSKNGGDWMMEIYDQTHPSI 321
           +V+     D + + Y Q HP  
Sbjct: 291 HVS----VDRLRKSYQQAHPRA 308


>gi|255975766|ref|ZP_05426352.1| phage integrase [Enterococcus faecalis T2]
 gi|307277985|ref|ZP_07559069.1| tyrosine recombinase XerC [Enterococcus faecalis TX0860]
 gi|312899495|ref|ZP_07758825.1| tyrosine recombinase XerC [Enterococcus faecalis TX0470]
 gi|255968638|gb|EET99260.1| phage integrase [Enterococcus faecalis T2]
 gi|306505382|gb|EFM74568.1| tyrosine recombinase XerC [Enterococcus faecalis TX0860]
 gi|311293365|gb|EFQ71921.1| tyrosine recombinase XerC [Enterococcus faecalis TX0470]
          Length = 299

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 98/325 (30%), Positives = 162/325 (49%), Gaps = 30/325 (9%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK-IT 59
           ME  N PE+           + + L +ERG S+ T ++Y+ D + F  FL     +  +T
Sbjct: 1   MEEKNWPEL-----------FARYLIVERGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLT 49

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           ++ +      ++RA++S+   Q+    S+ R ++ ++SF ++L K +   E+    +   
Sbjct: 50  VEHL------DVRAYLSELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMK 103

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           KK   LPR   EK+   L +     ++     +D RN A+L +LYG G+R+SE  +LT  
Sbjct: 104 KKQLRLPRFFYEKEMDALFE-----SAQGEHPLDLRNQALLEVLYGTGIRVSECANLTVD 158

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGK 236
            +    S L + GKG+K R VP     + A+ +Y +     L    Q     +F    G+
Sbjct: 159 AVDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGE 218

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            + P   +  + QL +   L      H LRH+FATHLL+NG D+R++Q +LGH  LSTTQ
Sbjct: 219 QITPTGIEYVLNQLIKKSSLNAEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQ 278

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSI 321
           IY +V  ++    + + Y   HP  
Sbjct: 279 IYAHVTKES----LQKNYRTFHPRA 299


>gi|325290382|ref|YP_004266563.1| Tyrosine recombinase xerC [Syntrophobotulus glycolicus DSM 8271]
 gi|324965783|gb|ADY56562.1| Tyrosine recombinase xerC [Syntrophobotulus glycolicus DSM 8271]
          Length = 300

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 92/308 (29%), Positives = 152/308 (49%), Gaps = 13/308 (4%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+    +    +  R LS  T+ +Y+ D  QF  F A     +     +  +    +R +
Sbjct: 4   LEGIDRFASYQKA-RNLSLHTISAYQSDLVQFTEFAAAELGVEFAEVELDLVDKIIVRTY 62

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I +   + +  R++ R L+ I++F +YL +  I  +S +L +   K   +LPR L  +  
Sbjct: 63  IFQLADKGLSRRTVARKLAAIRAFFRYLSREGIVKQSPMLKINTPKLGQTLPRFLYPEHM 122

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L     L    ++  +  R+  I+ LLYG GLR+SE + +  +++  + + +RI+GKG
Sbjct: 123 EKL-----LAVLDDSSEMGQRDKLIIELLYGSGLRVSELVGINIEDLDLESAFVRIRGKG 177

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K RIVPL       +  Y D          Q  L R  +G  ++    +R + +L +  
Sbjct: 178 GKERIVPLTEPAVLELRRYLDRWGR---SQHQEALIRNYQGTRMSTRSVRRILDKLEKKA 234

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            L      H LRH+FATHLL  G DLRS+Q +LGH +LS+TQIYT++      + + E+Y
Sbjct: 235 NLNQHIYPHMLRHTFATHLLDGGADLRSVQELLGHKKLSSTQIYTHLT----REKLREVY 290

Query: 315 DQTHPSIT 322
            Q+HP   
Sbjct: 291 RQSHPRAK 298


>gi|262376987|ref|ZP_06070213.1| tyrosine recombinase XerD [Acinetobacter lwoffii SH145]
 gi|262308025|gb|EEY89162.1| tyrosine recombinase XerD [Acinetobacter lwoffii SH145]
          Length = 305

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 89/321 (27%), Positives = 154/321 (47%), Gaps = 20/321 (6%)

Query: 2   EGNNLPEIVS-FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           +   +P  V   +     Q +   L  +  +S  T  +Y  D  Q    L+         
Sbjct: 4   KKPRIPAPVQIPDAFSYLQGFRDYLIAQ-TVSPHTRNAYLSDLVQCAECLS--------- 53

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           + + + ++ +I   +     Q+   RS+ R LS ++SF K+L+++K+ +++ +   +  K
Sbjct: 54  KPLPEWNHDDISDVLIALTKQQKSPRSIARCLSALRSFYKFLREQKLRSDNPVAAHKTPK 113

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
              +LP+ L+E     L+     H       +  R+ A+  +LY CGLR++E ++L  + 
Sbjct: 114 LGRALPKDLSEADVEALI-----HAPDINTALGLRDRAMFEVLYACGLRVTELINLRLEL 168

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I   Q  LRI GKG+K R++P+     + + +Y +     L       LF    G  ++ 
Sbjct: 169 INLKQGYLRIVGKGNKERLIPMGQMACEWVEKYLNEARPQLYKTSTDYLFLTQHGGIMSR 228

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             F   I++     G+    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+
Sbjct: 229 QNFWYAIKRYALQAGIQSELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTH 288

Query: 301 VNSKNGGDWMMEIYDQTHPSI 321
           V        M +++   HP  
Sbjct: 289 VAQVR----MQQLHATHHPRA 305


>gi|209965542|ref|YP_002298457.1| tyrosine recombinase XerC, putative [Rhodospirillum centenum SW]
 gi|259710436|sp|B6IPE2|XERC_RHOCS RecName: Full=Tyrosine recombinase xerC
 gi|209959008|gb|ACI99644.1| tyrosine recombinase XerC, putative [Rhodospirillum centenum SW]
          Length = 341

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 114/313 (36%), Positives = 167/313 (53%), Gaps = 8/313 (2%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            +  +  + W + LE ERG S  TL+SY  D   FL F+A +      +  +  L     
Sbjct: 14  PDAAEALERWGRWLEHERGASTHTLRSYRADLAGFLAFVAEHRGRPPGLNDLGALDLGAF 73

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           RA+++ R     G  +  R +SG++SF ++  +  +     I  +   K    LPR    
Sbjct: 74  RAWLAARAADGAGAATRSRGVSGVRSFFRWADRSGLLHNPAIALLTAPKAQRPLPRP--L 131

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
                 +         E  WI  R+ A+  LLYGCGLRISEA+ L   ++    +++R+ 
Sbjct: 132 AADDAALLLEEAAAVPEAPWIGLRDRALFTLLYGCGLRISEAIGLNRSDLPAGAASVRVL 191

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG K R VP+LP+VR+A+  Y    P+        PLF G +G  L+P V +R +R LR
Sbjct: 192 GKGGKQRDVPVLPAVREAVAAYLAAVPW--GGGRAAPLFVGAKGDRLSPDVARRQMRHLR 249

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             LGLP STT H LRHSFATHLL  G DLR+IQ +LGH  LSTTQ YT+V++++    ++
Sbjct: 250 ALLGLPDSTTPHALRHSFATHLLGGGADLRAIQDLLGHASLSTTQRYTDVDAEH----LL 305

Query: 312 EIYDQTHPSITQK 324
            +Y+  HP   ++
Sbjct: 306 SVYETAHPRARRQ 318


>gi|288928808|ref|ZP_06422654.1| integrase/recombinase XerD [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288329792|gb|EFC68377.1| integrase/recombinase XerD [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 304

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 87/307 (28%), Positives = 156/307 (50%), Gaps = 16/307 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +++ L++ER LS  T+++Y  D R  L ++ F+  +      + +L    +  F + 
Sbjct: 12  VKAYMRYLKLERNLSPNTIEAYRNDLRWLLAYVNFHGLK------VEELKLEHLDNFSAS 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q+I  RS  R LSG++SF K+L             + +    N+LP  L+  +   L
Sbjct: 66  LHDQRIMPRSQARILSGVRSFFKFLLLDGFIDADPTELLVSPHVRNALPDVLSTAEVDRL 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
             ++ L     +KW   RN AI+ +L+ CGLR+SE ++L   N+  ++  +R+ GKGDK 
Sbjct: 126 EASIDL-----SKWEGQRNRAIVEVLFSCGLRVSELVNLKLSNLYVEEKFVRVTGKGDKE 180

Query: 198 RIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       +  ++       +    +  +F   RG  L   +    I++     G+
Sbjct: 181 RLVPISSRALDELNAWFADRNAMRIKPGEEDYVFLNRRGAHLTRTMILIMIKRQAVAAGI 240

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HTLRHSFAT LL  G DL +IQ+++GH  ++TT+IYT++++ +    + E   +
Sbjct: 241 TKTISPHTLRHSFATALLEGGADLIAIQAMMGHEDIATTEIYTHIDTSS----LREEITK 296

Query: 317 THPSITQ 323
            HP   +
Sbjct: 297 HHPRNKK 303


>gi|268592909|ref|ZP_06127130.1| tyrosine recombinase XerC [Providencia rettgeri DSM 1131]
 gi|291311699|gb|EFE52152.1| tyrosine recombinase XerC [Providencia rettgeri DSM 1131]
          Length = 309

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/313 (24%), Positives = 148/313 (47%), Gaps = 18/313 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L+ + + +L  L +ER LS +T+ +Y       +  LA      + I   +++  T +R 
Sbjct: 13  LMSQIEAFLYYLRVERRLSPVTITNYRRQLSVIVEMLAL-----LNIHEWQKVDATIVRN 67

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             +K R   +   S+   LS ++SF  ++ ++     +    +   K    LP+ ++  +
Sbjct: 68  IAAKSRKSGLQAASMALRLSSLRSFFDWMVQQGELPANPAKAIHAPKSKKRLPKNMDVDE 127

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++            +  R+  +L ++YG GLR+SE + L  +++  +   + + GK
Sbjct: 128 VSQLLNM------DSGDPLVVRDRTMLEVMYGAGLRLSELVGLDVRHLDLNTGEVWVMGK 181

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRR 252
           G K R VP+  +    +  + ++   +L       +F   +  K ++    Q+   Q   
Sbjct: 182 GSKERRVPMGKTAVSWLQRWLEMR--ELYDPEDDAVFISTQSGKRISNRNVQKRFEQWGI 239

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+      H LRHSFATH+L + G+LR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 240 KQGVNSHINPHKLRHSFATHILESSGNLRGVQELLGHANLSTTQIYTHLDFQH----LAN 295

Query: 313 IYDQTHPSITQKD 325
           +YD  HP   ++ 
Sbjct: 296 VYDVAHPRAKREK 308


>gi|308177312|ref|YP_003916718.1| tyrosine recombinase subunit XerC [Arthrobacter arilaitensis Re117]
 gi|307744775|emb|CBT75747.1| tyrosine recombinase subunit XerC [Arthrobacter arilaitensis Re117]
          Length = 334

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 96/328 (29%), Positives = 153/328 (46%), Gaps = 24/328 (7%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            S +  +   ++L+ L+ ERG S+ TL++Y+ D R    FL  +  +      ++Q+S  
Sbjct: 15  PSAKFSEPVADYLEYLQRERGRSENTLRAYDVDLRNLGQFLNEHAGDP----ALKQISVQ 70

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R +++     ++   +L R +S +K+F  +  K  +      L +   KK   LP  L
Sbjct: 71  MLRDWLAYLHESEVSRTTLARRISAVKNFFAWALKNHLVENDPALRLAAPKKERRLPHIL 130

Query: 130 NEKQALTLVDNVL---------------LHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
              Q   L+                        + + I  R+  I  LLY  GLRISE +
Sbjct: 131 QPSQIDRLLSEHAGLTEENEAARQKGDGTDQDPKARAIQCRDRVIAELLYASGLRISELV 190

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGI 233
           +L   +I  ++ TLR+ GKG+K R+VP      + I+E+             +  L  G+
Sbjct: 191 ALDISDIDFERRTLRVLGKGNKERMVPFGKPAERVIIEWIRSYRRVVAAEQAEDALLVGV 250

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           RG  LN    +  I    R LG   ++  H LRH+ ATHLL  G DLR++Q  LGH  L+
Sbjct: 251 RGSRLNVRQAREVIASALRSLGDTSASGPHALRHTVATHLLDGGADLRAVQEFLGHASLA 310

Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           TTQ+YT+V+     D + + Y Q HP  
Sbjct: 311 TTQLYTHVS----VDRLRQSYRQAHPRA 334


>gi|288803482|ref|ZP_06408914.1| integrase/recombinase XerD [Prevotella melaninogenica D18]
 gi|288334092|gb|EFC72535.1| integrase/recombinase XerD [Prevotella melaninogenica D18]
          Length = 314

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 91/308 (29%), Positives = 154/308 (50%), Gaps = 16/308 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            + + L++E+G S  TL +Y  D  +   +LA    E++ +  ++        AFIS   
Sbjct: 13  RYRRYLKLEKGYSANTLDAYMRDVDKLFRYLAV---EQVDVLDVKLEDLEYFAAFISDL- 68

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              IG RSL R LSG++ F ++L             + + K+ + LP  L+  +   L  
Sbjct: 69  --GIGPRSLARILSGVRQFYRFLVIDGYLEVDPTELLESPKQPDHLPEVLSTAEVDLLEQ 126

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            + L     +KW   RN AI+ +L+ CGLR+SE  +L   N+  ++  +R+ GKG K R+
Sbjct: 127 AIDL-----SKWEGHRNRAIIEVLFSCGLRVSELTNLKLSNLYIEEQYIRVMGKGSKERL 181

Query: 200 VPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+ P     +  ++       +    +  +F   RG+ L   +    I++     G+  
Sbjct: 182 VPISPRALDELNYWFADRNVMKIKPGEEDYVFLNRRGQHLTRTMILIMIKRYAVEAGIKK 241

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++      ++E     H
Sbjct: 242 TISPHTLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDTSTLRQEILE----HH 297

Query: 319 PSITQKDK 326
           P   Q ++
Sbjct: 298 PRNIQYNE 305


>gi|257876703|ref|ZP_05656356.1| site-specific recombinase [Enterococcus casseliflavus EC20]
 gi|257810869|gb|EEV39689.1| site-specific recombinase [Enterococcus casseliflavus EC20]
          Length = 299

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 96/307 (31%), Positives = 148/307 (48%), Gaps = 17/307 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ + + L +ERG S+ T ++Y+ D   F  FL     E         + Y ++R ++S 
Sbjct: 7   QEEFFRYLIVERGYSEKTKKAYQEDMNDFFHFLKESGNE-----DPLAVEYRDVRVYLSY 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              ++    S+ R ++ ++SF ++L K +I  E+    +   KK+  LPR   EK+   L
Sbjct: 62  LTERRYSRNSISRKMASLRSFYQFLTKHEIVKENPFAYIHLKKKNAKLPRFFYEKEMDAL 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
             +V        + +  RN A+L +LYG GLR+SE  SLT   I  +   L I GKG+K 
Sbjct: 122 FQSV-----AGDEPLQQRNQALLEVLYGSGLRVSECSSLTLGAIDWESGVLLIHGKGNKD 176

Query: 198 RIVPLLPSVRKAILEYYDLCP---FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           R VP     + A+  Y         +        LF    G  +     +  + Q+ R  
Sbjct: 177 RYVPFGSYAQAAVKRYLSSGRKQLMEKQNKEHEVLFVNHLGDGITATGIEYVLNQIIRKS 236

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            L      H LRH+FATHLL+NG D+R++Q +LGH  LSTTQIY +V      D + + Y
Sbjct: 237 SLDSKIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVT----KDSLQKNY 292

Query: 315 DQTHPSI 321
            Q HP  
Sbjct: 293 RQFHPRA 299


>gi|310822341|ref|YP_003954699.1| Tyrosine recombinase XerC [Stigmatella aurantiaca DW4/3-1]
 gi|309395413|gb|ADO72872.1| Tyrosine recombinase XerC [Stigmatella aurantiaca DW4/3-1]
          Length = 300

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 95/312 (30%), Positives = 145/312 (46%), Gaps = 19/312 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L    + +  +LE E+G S  T+++Y  D   F  +L    +      ++   ++  IR 
Sbjct: 4   LSPLLEKFRIHLEHEKGASPHTVRNYLIDLVDFEKYLVGTMK-----LSLLAGTHAAIRG 58

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++           S  R L+ IKSF KYL ++K+ + S    +++ K   SLP+ L   +
Sbjct: 59  YLGTLSVDH-APASRGRRLASIKSFYKYLVRQKLLSASPAKLVKSPKLPKSLPKVLPVDE 117

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              +++   L T      +  R+ AIL +LYG GLRISE   L   ++      +R+ GK
Sbjct: 118 VFAILEMPSLKT-----VLGLRDRAILEILYGGGLRISELCGLNLLDVDRSGRIVRVMGK 172

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           G K R+ P+     +A+  Y       L           +F   RG  L P    R++  
Sbjct: 173 GGKERLCPVNEPSIRALEAYLARRGELLATPHAGQDPEAMFLNYRGGRLTPRSIARHLDT 232

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                 L    + H LRHSFATHLL  G D+RSIQ +LGH  LSTTQ YT+V  +     
Sbjct: 233 YVVKCALTRKVSPHALRHSFATHLLGGGADVRSIQELLGHASLSTTQRYTHVTVEQ---- 288

Query: 310 MMEIYDQTHPSI 321
           + ++YD  HP  
Sbjct: 289 LQQVYDAAHPRA 300


>gi|297569003|ref|YP_003690347.1| tyrosine recombinase XerC [Desulfurivibrio alkaliphilus AHT2]
 gi|296924918|gb|ADH85728.1| tyrosine recombinase XerC [Desulfurivibrio alkaliphilus AHT2]
          Length = 330

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 91/342 (26%), Positives = 150/342 (43%), Gaps = 43/342 (12%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + S  L +    +L+ L++E+G S  T+ SY  D  +F             ++ + QL  
Sbjct: 1   MTSDRLAEHVDGFLRWLQVEKGYSPHTVSSYRRDLDEFAALDRGAGP----LERVDQLDA 56

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +RAF+     +     S+ R LS +++F +YL+K  +        +   K    LP  
Sbjct: 57  RRVRAFVYSLHGRNRS-SSVARKLSALRTFFRYLQKNGVIAHDPAAAVAAPKAEGYLPTV 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+  +  +L++              AR+ A+L LLY  G+R++E  +L  + +   +  +
Sbjct: 116 LSVDEVFSLLEM-----PGPADTYAARDRAMLELLYSTGMRVAELAALNLEQLDLAEGMV 170

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI----------------------- 225
           R++GKG+K R+VP+     +A+  Y       L                           
Sbjct: 171 RVRGKGNKERLVPIGTPACEAVQAYLPQREVLLRAAKREREEPQEEKPPAPAGGKRSRPA 230

Query: 226 ------QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
                 + PL    RG  L     +R ++      G+    + H LRHSFATHLL  G D
Sbjct: 231 RREAAQEQPLLLNARGGRLTTRSIERLVKLYAERAGIAARVSPHALRHSFATHLLEMGAD 290

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           LR++Q +LGH  LSTTQ YT++N     D +  +YD+ HP  
Sbjct: 291 LRTVQELLGHASLSTTQRYTHLN----LDHLTAVYDKAHPRA 328


>gi|83313028|ref|YP_423292.1| site-specific recombinase XerD [Magnetospirillum magneticum AMB-1]
 gi|82947869|dbj|BAE52733.1| Site-specific recombinase XerD [Magnetospirillum magneticum AMB-1]
          Length = 308

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 87/317 (27%), Positives = 146/317 (46%), Gaps = 17/317 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S    +  +++L+ +++ERG S  TL +Y  D   F  FL     +      +R     
Sbjct: 1   MSVPFDRHIESFLEMMQVERGASPNTLDAYGRDLADFAEFL-----DGRGFSPLRA-DAR 54

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            + A+I+++    +  R+  R LS +K F  ++   ++  +    N+   +    LP+ L
Sbjct: 55  AVAAYIARQAEIGMAARTQARRLSCLKQFYGFVFAERLRPDDPTANIDAPRLGRPLPKYL 114

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
             ++   L+D        +        +A+L  LY  GLR+SE +SL    +  D S L 
Sbjct: 115 RREEVTALLDAARALEGSD----GILMTALLETLYAAGLRVSELVSLPLSAVARDPSVLV 170

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRG-KPLNPGVFQRYI 247
           ++GKG K R+VPL    R A+L +       +        LF        L    F + +
Sbjct: 171 VRGKGSKERMVPLSDPARAALLAWKVERQTLVPKSKPSRWLFPSSGALGHLTRSGFAKML 230

Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
            ++    GL P   + H LRHSFA+HLL+ G DLRS+Q +LGH  ++TT+IYT++     
Sbjct: 231 GRVAVLAGLDPAKVSPHVLRHSFASHLLAGGADLRSVQEMLGHADIATTEIYTHLIDDEA 290

Query: 307 GDWMMEIYDQTHPSITQ 323
           G     +    HP   +
Sbjct: 291 G----RLVRAHHPLAAK 303


>gi|262280674|ref|ZP_06058457.1| tyrosine recombinase XerD [Acinetobacter calcoaceticus RUH2202]
 gi|262257574|gb|EEY76309.1| tyrosine recombinase XerD [Acinetobacter calcoaceticus RUH2202]
          Length = 306

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 91/320 (28%), Positives = 151/320 (47%), Gaps = 19/320 (5%)

Query: 2   EGNNLPEIVS-FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           +   +P  V   E L   Q +   L  +  +S  T  +Y  D  Q               
Sbjct: 4   KKPRIPSPVQIPEHLSFLQGFRDYLVAQ-TVSPHTRNAYLSDLIQCSELHKK-------- 54

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             + Q S  +I   + +        RS+ R LS ++ F K+L+++K+ +++ +    + K
Sbjct: 55  NALPQWSSDDIADVLIELTKAGKSPRSIARCLSTLRQFYKFLREQKLRSDNPVATHHSPK 114

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
              +LP+ L+E+   +L+             +  R+ A+  +LY CGLR+SE L+L  + 
Sbjct: 115 IGRALPKDLSEEDVESLI-----QAPDINTALGLRDRAMFEVLYACGLRVSELLNLRLEL 169

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I   Q  LR+ GKG+K R+VPL     + +  Y +     L  +    LF    G  ++ 
Sbjct: 170 INLKQGYLRVTGKGNKERLVPLGQFACEWVERYLNNARPQLYKSSTDYLFLTQHGGIMSR 229

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             F   I++      +    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+
Sbjct: 230 QNFWYAIKRYALQANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTH 289

Query: 301 VNSKNGGDWMMEIYDQTHPS 320
           V        M +++++ HP 
Sbjct: 290 VAQVR----MQQLHEKHHPR 305


>gi|300310183|ref|YP_003774275.1| site specific integrase/recombinase [Herbaspirillum seropedicae
           SmR1]
 gi|300072968|gb|ADJ62367.1| site specific integrase/recombinase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 307

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 90/320 (28%), Positives = 155/320 (48%), Gaps = 17/320 (5%)

Query: 3   GNNLPEIVSFELLKE-RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           G   P+I +  + +E    +  +L +E GLSK TL++Y  D  ++  +L  Y E     +
Sbjct: 2   GRTTPKIEAPAVSREAIDEFCDSLWLEDGLSKNTLEAYRRDMTRYAHWL--YQER---AK 56

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            + +    ++ A+ + R  Q     S  R L+ +K F +   ++        L +R+ ++
Sbjct: 57  ALYETQAEDLNAYFAARHDQT-KPSSSNRRLAVLKRFFQLALRQHHVAADPCLKLRSARQ 115

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
               P+ L+E Q   L+          +  +  R+ A++ L+Y  GLR+SE + L    +
Sbjct: 116 PQRFPKTLSEGQVEALL-----AAPDVSTPLGLRDRAMIELMYASGLRVSELVLLKSIEV 170

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNP 240
             ++  LR+ GKG K R+VP        ++ Y        L   +   LF   RG P+  
Sbjct: 171 GMNEGVLRVTGKGSKTRLVPFGEEAGSWLMRYLAEARAQILQGQVDDALFVTARGGPMTR 230

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            +F   I++     G+    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+
Sbjct: 231 QMFWTLIKKYALQAGVTARLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTH 290

Query: 301 VNSKNGGDWMMEIYDQTHPS 320
           V  +     + +++   HP 
Sbjct: 291 VARER----LKQLHAAHHPR 306


>gi|323343537|ref|ZP_08083764.1| integrase/recombinase XerD [Prevotella oralis ATCC 33269]
 gi|323095356|gb|EFZ37930.1| integrase/recombinase XerD [Prevotella oralis ATCC 33269]
          Length = 317

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 86/312 (27%), Positives = 151/312 (48%), Gaps = 16/312 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++++ L++ER  S  TL++Y+ D    + + A           + +L   ++  F  +
Sbjct: 14  VKSYVRYLKLERNYSPHTLEAYQHDLSWLIGYCAQQD------LNVFELKLADLERFAVQ 67

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +G  +  R LSG++SF ++L             + +      LP  L+  +   L
Sbjct: 68  IHEHGVGPATQARILSGVRSFYRFLVLDGYIAADPTELLESPHIGEHLPEVLSAAEVDML 127

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            D++ L     +KW   RN AI+ +L+ CGLR+SE ++L   ++  ++  +R+ GKGDK 
Sbjct: 128 EDSIDL-----SKWEGQRNKAIIEMLFSCGLRVSELVNLKLSDLYIEEEYVRVLGKGDKE 182

Query: 198 RIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+ P   K +  ++       +       +F   RG  L   +    I++     G+
Sbjct: 183 RLVPISPKAIKELKLWFIDRNLMQIKPGEIDFVFLNRRGSHLTRTMILIMIKRQAEAAGI 242

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HTLRHSFAT LL  G DLR+IQ +LGH  + TT+IYT+++       + E    
Sbjct: 243 RKTISPHTLRHSFATELLKGGADLRAIQEMLGHESIGTTEIYTHID----ISTLREEILN 298

Query: 317 THPSITQKDKKN 328
            HP     ++KN
Sbjct: 299 HHPRNIMYNEKN 310


>gi|183221728|ref|YP_001839724.1| tyrosine recombinase xerD [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189911803|ref|YP_001963358.1| site-specific recombinase XerD [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167776479|gb|ABZ94780.1| Site-specific recombinase XerD [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167780150|gb|ABZ98448.1| Tyrosine recombinase xerD [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 302

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 90/304 (29%), Positives = 148/304 (48%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q + + L +E+GLS  ++ SY  D  +F IFL       +      ++   +I  F+ +
Sbjct: 13  LQTFQEYLSVEKGLSDNSIYSYGYDLNKFAIFLEKEHINFL------EVKANDIMRFLEE 66

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R +KI  ++L R +  I+ F KYL+  K    +    +   + + ++P  L + +   L
Sbjct: 67  ERERKISAKTLAREVVAIRQFYKYLRDEKRLDSNPTEKIETPEVARTIPDYLTQAEIEEL 126

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
             N+      E    + R+  I  LLY  GLRISEA +L   +I  +  T+ ++GKG + 
Sbjct: 127 FRNI-----KEDNLYELRDKCIFELLYSSGLRISEACNLKMTDIDMENMTITVEGKGGRQ 181

Query: 198 RIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP      + +  Y      + L       +F   +G  +N     R +    +   +
Sbjct: 182 RLVPFGEKSLEILKRYLVESRTEILKKRTCDFVFVSKKGSYINRKSVWRLLNHYIKRTKI 241

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               T HTLRHSFATHLL N  DL+S+Q +LGH  +STTQIYT++ +K     + E++ +
Sbjct: 242 KKKVTPHTLRHSFATHLLENHADLKSVQELLGHIDISTTQIYTHMANKT----LKEVHKK 297

Query: 317 THPS 320
            HP 
Sbjct: 298 FHPR 301


>gi|282854671|ref|ZP_06264006.1| phage integrase, N-terminal SAM domain protein [Propionibacterium
           acnes J139]
 gi|282582253|gb|EFB87635.1| phage integrase, N-terminal SAM domain protein [Propionibacterium
           acnes J139]
 gi|314981983|gb|EFT26076.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL110PA3]
 gi|315090894|gb|EFT62870.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL110PA4]
          Length = 300

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 81/308 (26%), Positives = 145/308 (47%), Gaps = 10/308 (3%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L    +++  +L   R  S  T++ Y  D    +     + +  +      ++  +++RA
Sbjct: 3   LTVPVEDFCDHLLALRR-SPNTIRGYRADLIDLMSHAYSHGDNILG-----RIGISQVRA 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++  R       +++R  S  + F ++     + +      + ++K    LP  L   Q
Sbjct: 57  WLADTRVAGASAATMQRRWSAARVFFRWAANEGLVSADPTATLNSVKVPKRLPATLGVDQ 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           A  ++D  +    H+     AR++AIL +LYG GLR+ E   L   ++   + T+++ GK
Sbjct: 117 ARHILDEAVAQARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRHTVKVTGK 176

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GDK R VP+     +AI  +       +  +    LF G RG+ ++  V +R +    R 
Sbjct: 177 GDKERTVPMGAPALRAIDTWLPRREEWVGPHSGQALFLGERGRRIDQRVVRRVVHTHLRA 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                    H LRH+ ATHLL  G DLR++Q +LGH  L+TTQIYT+V+++     +   
Sbjct: 237 EPDSPDLGPHGLRHAMATHLLEGGADLRTVQDMLGHKSLATTQIYTHVSTER----LRTA 292

Query: 314 YDQTHPSI 321
           + Q HP  
Sbjct: 293 FRQAHPRA 300


>gi|107024018|ref|YP_622345.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia
           AU 1054]
 gi|116691105|ref|YP_836728.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia
           HI2424]
 gi|105894207|gb|ABF77372.1| Tyrosine recombinase XerC [Burkholderia cenocepacia AU 1054]
 gi|116649194|gb|ABK09835.1| tyrosine recombinase XerC [Burkholderia cenocepacia HI2424]
          Length = 306

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 87/321 (27%), Positives = 160/321 (49%), Gaps = 29/321 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                +L NL+  R LS+ TL++Y  +  +     A         + +  L+  ++R  +
Sbjct: 4   DPIAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAG--------RPLEALTAADMRGAV 55

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            +     +  RS+   LS  ++F ++  +R     + +  +R  K+  SLP+AL+   A+
Sbjct: 56  VRGHAAGLSARSISHRLSAWRAFYRWFAQRVEMPANPVAGVRAPKREKSLPKALSVDDAV 115

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-----------MDD 184
            L+D  L  T+   +     + AIL L Y  GLR++E + L  +                
Sbjct: 116 ALMDAPLAGTTESIR-----DHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLA 170

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           ++ + ++GKG+K R VP+      A+  +  +    +  +   PLF  +RG  ++PGV +
Sbjct: 171 EAEVTVRGKGNKERKVPVGSKAIDALNAWLAVRDEFVKHDPH-PLFVSVRGNRMSPGVVR 229

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  ++ TQIYT+++ +
Sbjct: 230 ERVKRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQ 289

Query: 305 NGGDWMMEIYDQTHPSITQKD 325
           +    + +IYD  HP   ++D
Sbjct: 290 H----LAKIYDSAHPRAKKRD 306


>gi|88855485|ref|ZP_01130149.1| tyrosine recombinase [marine actinobacterium PHSC20C1]
 gi|88815392|gb|EAR25250.1| tyrosine recombinase [marine actinobacterium PHSC20C1]
          Length = 311

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 94/315 (29%), Positives = 153/315 (48%), Gaps = 20/315 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
            L    + +L++L IERGLS+ TL +Y  D   +L FL+     +  +     ++  ++ 
Sbjct: 12  ALAVASERFLRHLAIERGLSQNTLAAYRRDLDSYLGFLS-----ERDLAEPSAITADDVA 66

Query: 73  AFISKRR---TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           AF    R    + +   S+ R LS ++    +     + ++     +   K++  LP+A+
Sbjct: 67  AFAHSLRVDPERPLAASSVARMLSTVRGLHTFFVDESLVSDDVAHKVAIPKQTMRLPKAI 126

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
             +Q      + +L +      +  RN+A+L LLY  G R+SE  +L   +++ D   +R
Sbjct: 127 TIEQM-----SSVLASFAGDDVVSLRNTALLELLYATGARVSEVTALNVDDMI-DGDVVR 180

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN--IQLPLFRGIRGKPLNPGVFQRYI 247
           + GKG+K RIVP+    + AI +Y       L+        LF G RG  L+       I
Sbjct: 181 LLGKGNKQRIVPVGSFAQAAIEKYLVRSRPVLSAKGTATPALFLGARGARLSRQNVWLII 240

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +     + L L  + HT RHSFATHLLS G D+R +Q +LGH  ++TTQIYT V      
Sbjct: 241 QSAAERVNLGLDISPHTFRHSFATHLLSGGADVRVVQELLGHSSVATTQIYTLVT----A 296

Query: 308 DWMMEIYDQTHPSIT 322
           D + ++Y   HP   
Sbjct: 297 DTLRDMYTTAHPRAR 311


>gi|256821403|ref|YP_003145366.1| tyrosine recombinase XerC [Kangiella koreensis DSM 16069]
 gi|256794942|gb|ACV25598.1| tyrosine recombinase XerC [Kangiella koreensis DSM 16069]
          Length = 299

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 87/313 (27%), Positives = 153/313 (48%), Gaps = 14/313 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + Q +L  L  E+  S+ T+ +Y     + L F              +Q++  +IR 
Sbjct: 1   MESDIQRYLNRLLHEKRYSEHTVNNYRRQLERLLAFC-----HDAGYSNWQQITTQDIRM 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            I+KR  Q     S    LS ++ FL++L   K  T +  + +R  KK+  LP+ ++   
Sbjct: 56  LIAKRHRQGASPSSSALQLSAMRRFLEFLLSEKKITVNPAVGVRGPKKAKRLPKNIDVDS 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
               +D +      E + I+ R+ A++ LLY  G+R++E  ++   ++     +LR+ GK
Sbjct: 116 LNHFLDQM-----PEDEPIEVRDKAMMELLYSSGIRLAELSAMDIDDLSFSDQSLRVLGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K+R VP   S +K +  +          + +  LF   +G  L     Q+ +    + 
Sbjct: 171 GNKVREVPFGNSSKKVLSLWLKERNNFAKNSDEKALFLSQQGNRLTNRAIQQRLAHWGKK 230

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           LGL      H LRHS ATH+L +  DLR++Q +LGH  +STTQIYT+++ ++    + + 
Sbjct: 231 LGLNDRLHPHKLRHSCATHVLESSSDLRAVQELLGHASISTTQIYTHLDFQH----LAKT 286

Query: 314 YDQTHPSITQKDK 326
           YD  HP   +K +
Sbjct: 287 YDAAHPRARKKKE 299


>gi|46580064|ref|YP_010872.1| phage integrase family site specific recombinase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46449480|gb|AAS96131.1| site-specific recombinase, phage integrase family [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 294

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 139/305 (45%), Gaps = 16/305 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
             WL++L +ERGL++ TL +Y  D  +  +FL            + ++    +   +   
Sbjct: 2   DRWLEHLLVERGLAENTLAAYSADLIELQVFLEERG------CLLAEVDEQTLFMHVVDL 55

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R + +  R+L R L+ ++ F  +            L + N K + +LP  L   +  T++
Sbjct: 56  RRRGMAGRTLARHLATLRGFFAFAVGEGELEADPALFLENPKLARNLPDVLTRDEMATIL 115

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                     +  +  R+  +L L+Y  GLR+SE  +L P +       +R+ GKG K R
Sbjct: 116 -----ARPDLSDRLGFRDRTMLELMYAAGLRVSELCALRPLDFDAQAGVVRVFGKGAKER 170

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVP+       +  Y           ++  +F    GK L+     + +++     G+  
Sbjct: 171 IVPVHHVSCALVTAYLRD-WRPAFSPVEPAMFLNRSGKGLSRQAVWKVVKRHVAEAGIHK 229

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HT RHSFATHLL  G DLRS+Q +LGH  +S T+IYT+V      D +  I++  H
Sbjct: 230 DISPHTFRHSFATHLLEGGADLRSVQLLLGHADISATEIYTHV----QADRLRRIHNAHH 285

Query: 319 PSITQ 323
           P   +
Sbjct: 286 PRTRR 290


>gi|50083543|ref|YP_045053.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1]
 gi|49529519|emb|CAG67231.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1]
          Length = 305

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 96/320 (30%), Positives = 153/320 (47%), Gaps = 20/320 (6%)

Query: 2   EGNNLPEIVS-FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           +   +P  V+  E     Q +   L  +  +S  T  +Y  D  Q           ++ +
Sbjct: 4   KKPRIPAPVTIPEQFSFLQGFRDYLVAQ-SVSPHTRNAYLSDLIQCA---------QLVV 53

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             + Q S   I   + +        RS+ RSLS ++ F K+L+++KI  ++ +   ++ K
Sbjct: 54  VPLPQWSSETISDVLIELTKTGKSPRSIARSLSALRQFFKFLREQKIRDDNPVALHKSPK 113

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
              +LP+ L+E+    L+     H       +  R+ A+L +LY CGLR+SE L+L  + 
Sbjct: 114 LGRTLPKDLSEQDVEALI-----HAPDTNTALGLRDRAMLEVLYACGLRVSELLNLRLEL 168

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I   Q  LRI GKG+K R+VPL       I  Y       L  +    LF    G  ++ 
Sbjct: 169 INLKQGYLRITGKGNKERLVPLGQMATDWIERYLVESRPQLYKSHTDYLFLTQHGGIMSR 228

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             F   I++      +    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+
Sbjct: 229 QNFWYAIKRYALQANILPEMSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTH 288

Query: 301 VNSKNGGDWMMEIYDQTHPS 320
           V        M +++++ HP 
Sbjct: 289 VAQ----IRMQQLHEKYHPR 304


>gi|317476478|ref|ZP_07935727.1| tyrosine recombinase XerD [Bacteroides eggerthii 1_2_48FAA]
 gi|316907504|gb|EFV29209.1| tyrosine recombinase XerD [Bacteroides eggerthii 1_2_48FAA]
          Length = 316

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 85/311 (27%), Positives = 145/311 (46%), Gaps = 16/311 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + Q L++E+ L+  T  +Y  D ++ L FL     E      +  ++  +++ F + 
Sbjct: 17  IRKYQQYLKLEKSLAPNTFDAYMTDLQKLLHFLEGENIE------VGNVTPDDLQRFAAG 70

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I  RS  R LSGIKSF  +L             +   K    +P  L  ++   +
Sbjct: 71  LHDIGIHPRSQARILSGIKSFFHFLTVADYLETDPSELLEGPKIGFKIPEVLTVEEIDRI 130

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +           K    RN AIL  LY CGLR+SE  +L   ++  ++  ++++GKG K 
Sbjct: 131 I-----SAVDMDKKEGQRNRAILETLYSCGLRVSELCNLKLSDLYFEEGFIKVEGKGSKQ 185

Query: 198 RIVPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+ P   K I  +        +    +  +F    G  ++  +    I++L    G+
Sbjct: 186 RLVPISPRAIKEIKYWLTDRNLGKIKKGYEDYVFLARWGNNISRIMVFHMIKELAEKTGI 245

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++       ++E    
Sbjct: 246 TKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIE---- 301

Query: 317 THPSITQKDKK 327
            HP   +  K+
Sbjct: 302 HHPRNIKYRKE 312


>gi|71906177|ref|YP_283764.1| tyrosine recombinase XerD subunit [Dechloromonas aromatica RCB]
 gi|71845798|gb|AAZ45294.1| tyrosine recombinase XerD subunit [Dechloromonas aromatica RCB]
          Length = 302

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 102/315 (32%), Positives = 151/315 (47%), Gaps = 17/315 (5%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           +I S   L E  N+   L +E GL+K TL SY  D  +  ++LA    E      +  L 
Sbjct: 2   KIASQADLSEIDNFCDALWLEDGLAKATLDSYRSDLSRLALWLANNASE-----PLLDLH 56

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
            T + AFI+    Q     S  R LS ++ F ++   R        L + N  + + LP+
Sbjct: 57  ETTLTAFIAHLAKQTRA-TSQARYLSTLRRFYRWQLGRGRIVADPTLKLANPSRPSRLPK 115

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            ++EKQ   L+D   L T      +  R+ A+L  +Y  GLR+SE ++L    +      
Sbjct: 116 VMSEKQVEALLDAPDLDTP-----LGLRDRAMLETIYATGLRVSELVNLRLHEVSLADGV 170

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRY 246
           LR  GKG K R+VPL     + I  Y +    D LN      LF   RG  +    F + 
Sbjct: 171 LRALGKGSKERLVPLGQLAIEWIKRYLNEARPDILNGQHSDDLFITARGGGMTRQAFWQL 230

Query: 247 IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           I++     G+ P   + H LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  + 
Sbjct: 231 IKRYALIAGIAPDKLSPHVLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER 290

Query: 306 GGDWMMEIYDQTHPS 320
               +  ++   HP 
Sbjct: 291 ----LKTLHAVHHPR 301


>gi|16124599|ref|NP_419163.1| site-specific tyrosine recombinase XerC [Caulobacter crescentus
           CB15]
 gi|221233288|ref|YP_002515724.1| site-specific tyrosine recombinase XerC [Caulobacter crescentus
           NA1000]
 gi|13421495|gb|AAK22331.1| integrase/recombinase XerC, putative [Caulobacter crescentus CB15]
 gi|220962460|gb|ACL93816.1| integrase/recombinase, XerC-CodV family [Caulobacter crescentus
           NA1000]
          Length = 304

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 119/307 (38%), Positives = 173/307 (56%), Gaps = 10/307 (3%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +    WL +L +ER  S  T+++Y  +   +L FL  +  E +++  + ++S  ++R ++
Sbjct: 5   QAYAAWLDHLTLERRASPRTVRAYGDNVLAYLNFLEAHRGEALSLSALAEISAADLRGYL 64

Query: 76  SKRR--TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           + RR     +  RSL ++LS I++F +YL +R     + +  +R  +    LPR ++E Q
Sbjct: 65  AWRRQGEHALAPRSLSQALSSIRAFHRYLDQRHGVANAAVDLVRGPRLKIGLPRPVSEDQ 124

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           A  L+       +    W  AR+ A+L LL+GCGLRISEALSL   +     +TLRI GK
Sbjct: 125 ARDLI-TQAAEDTERDPWETARDEAVLTLLWGCGLRISEALSLRMSDAPL-AATLRITGK 182

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K RIVP+L +VR AI  Y D  PF+L  +    LFR  RG PL+P   Q  ++ LR  
Sbjct: 183 GGKTRIVPVLDAVRDAIEAYLDELPFNLAPDE--ALFRAKRGGPLSPRHVQGLVQTLRGR 240

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           LGL    T H  RH+FATHLL  G DLR+IQ +LGH  LSTTQ YT V++      ++  
Sbjct: 241 LGLSDRVTPHAFRHAFATHLLGAGADLRAIQDLLGHASLSTTQRYTQVDAA----GLLAA 296

Query: 314 YDQTHPS 320
           Y   HP 
Sbjct: 297 YQAAHPK 303


>gi|261345243|ref|ZP_05972887.1| tyrosine recombinase XerC [Providencia rustigianii DSM 4541]
 gi|282566940|gb|EFB72475.1| tyrosine recombinase XerC [Providencia rustigianii DSM 4541]
          Length = 311

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 75/313 (23%), Positives = 148/313 (47%), Gaps = 18/313 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L+ + + +L+ L +ER LS +T+ +Y          L     +++ +   +QL     R 
Sbjct: 15  LMTQVEAFLRYLRVERRLSPVTITNYRRQLSAVCQIL-----DELKVSQWQQLDIAIGRN 69

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             +K R   +   S+   LS ++SF  ++ ++     + +  +   K    LP+ ++  +
Sbjct: 70  VAAKSRRTGLQAASMALRLSALRSFCDWMVEQGELPANPVKTIHAPKGKKRLPKNMDVDE 129

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++            +  R+  +L ++YG GLR+SE + L  +++  +   + + GK
Sbjct: 130 VSQLLNM------DSGDPLVVRDRTMLEVMYGAGLRLSELVGLDVKHLDLNSGEVWVMGK 183

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRR 252
           G K R +P+  +    +  + ++   +L       +F   +  K ++    Q+   Q   
Sbjct: 184 GSKERRIPMGKTAVNWLKRWLEMR--ELYDPEDGAVFISTQSGKRISNRNVQKRFEQWGI 241

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+      H LRHSFATH+L + G+LR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 242 KQGVNSHINPHKLRHSFATHILESSGNLRGVQELLGHANLSTTQIYTHLDFQH----LAS 297

Query: 313 IYDQTHPSITQKD 325
           +YD  HP   ++ 
Sbjct: 298 VYDVAHPRAKREK 310


>gi|309379484|emb|CBX21850.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 334

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 86/313 (27%), Positives = 145/313 (46%), Gaps = 13/313 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
                  +L+N+  E G S+ T+ +Y  D  +    LA    E       + LS  +  A
Sbjct: 35  FAAHFDAYLENIVRE-GKSEHTVAAYRRDLEELFALLAQMPSEAEG-GVPQDLSRRDFTA 92

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            + +   + +  R+L R LS  + +  +L KR +        +   K+   +P+AL ++ 
Sbjct: 93  ALRRLSQRGLNARTLARKLSSWRQYCAWLVKRGLMRTDPTAGISPPKQPQRIPKALPQEW 152

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++D  +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GK
Sbjct: 153 LNRMLDLPV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGK 208

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R VPL     +A+  Y  L     +      LF G  G  L+    Q+ + Q    
Sbjct: 209 GRKQRQVPLTGKSAEALKNYLPLRQTASDGK---ALFTGRNGTRLSQRQIQKRLAQWAAI 265

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G     + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +
Sbjct: 266 NGDGRHVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARL 321

Query: 314 YDQTHPSITQKDK 326
           YD+ HP   +++K
Sbjct: 322 YDEAHPRAKRQEK 334


>gi|239502060|ref|ZP_04661370.1| tyrosine recombinase XerD [Acinetobacter baumannii AB900]
          Length = 306

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 92/320 (28%), Positives = 148/320 (46%), Gaps = 19/320 (5%)

Query: 2   EGNNLPEIVS-FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           +   +P  V   E L   Q +   L  +  +S  T  +Y  D  Q             T 
Sbjct: 4   KKPRIPSPVQIPEHLSFLQGFRDYLVAQ-TVSPHTRNAYLSDLIQCSELHKKNRLPDWTS 62

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             I  +        + +        RS+ R LS ++ F K+L+++K+ +++ +    + K
Sbjct: 63  DDISDV--------LIELTKVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPK 114

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
              +LP+ L+E+    L+          T  +  R+ A+  +LY CGLR+SE L+L  + 
Sbjct: 115 IGRALPKDLSEEDVEALI-----QAPDITTALGLRDRAMFEILYACGLRVSELLNLRLEL 169

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I   Q  LRI GKG+K R+VPL       +  Y +     L  +    LF    G  ++ 
Sbjct: 170 INLKQGYLRITGKGNKERLVPLGQYACDWVERYLNEARPQLYKSSTDYLFLTQHGGIMSR 229

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             F   I++      +    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+
Sbjct: 230 QNFWYAIKRYALQANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTH 289

Query: 301 VNSKNGGDWMMEIYDQTHPS 320
           V        M +++++ HP 
Sbjct: 290 VAQVR----MQQLHEKHHPR 305


>gi|169830786|ref|YP_001716768.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637630|gb|ACA59136.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 317

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 86/326 (26%), Positives = 142/326 (43%), Gaps = 24/326 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +      +L  L+ ER  S  T+ +Y+ D    L + A    +         +     R 
Sbjct: 1   MYHLIDGFLAYLQAERQASPRTITAYQKDLFAGLDYFARRRGKADAELRAGDIDLKLFRG 60

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++      +   ++ R ++  +SF +YL +      S +  M   +    LP  L  ++
Sbjct: 61  YLAHLGQSGLARSTIARKVAAWRSFFRYLVRENAVPASPLAGMSAPRLKKRLPGVLYPEE 120

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
             TL++   L           R+ A+L +LY  GLR+SE + L   ++   Q+ +R+ GK
Sbjct: 121 VGTLLEAPDLS------PTGLRDRALLEMLYAGGLRVSELVGLDLADLELKQAYVRVLGK 174

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G++ R++PL     +A+  Y       L         LF   RG+ L     +       
Sbjct: 175 GNRERLLPLGGYAVEALKRYLAEGRPKLLGGKKTTAALFLNYRGERLTDRGVRLVFTNYL 234

Query: 252 R--YLGLP----------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           +    G+P               H LRH FATHLL  G DLR++Q +LGH RLSTTQIYT
Sbjct: 235 KGLASGVPGGTRFSGSADRQAGPHLLRHCFATHLLEAGADLRTVQELLGHARLSTTQIYT 294

Query: 300 NVNSKNGGDWMMEIYDQTHPSITQKD 325
            V++    D ++E+Y + HP    + 
Sbjct: 295 RVSA----DRLLEVYRRAHPRGRSRK 316


>gi|221194870|ref|ZP_03567927.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626]
 gi|221185774|gb|EEE18164.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626]
          Length = 313

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 88/314 (28%), Positives = 143/314 (45%), Gaps = 24/314 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              ++  L   R LS  T ++Y  D   ++ +      + +      Q ++  +RA++S 
Sbjct: 14  VDEFIAYLRTVRNLSDNTTRAYSVDLASYISWCKREELDPL------QATHRSLRAYLSY 67

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
               +   R+L R LS ++ F K+L K K       L + + + S  LP+ ++++    L
Sbjct: 68  LDQARYSARTLNRHLSALRGFYKWLNKEKYLEVDPSLILTSPRTSRRLPQTMSDEDVQKL 127

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           + +           +  R+ AIL  +Y  G RISE   L  +++   Q  +R+ GKG K 
Sbjct: 128 LLSC-----DTDTAVGLRDRAILECMYATGARISEISHLDREDVDMSQGVVRLFGKGSKE 182

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL---------NLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R VPL  + R  +  Y       L         N   +  LF  IRG  ++  V ++   
Sbjct: 183 RDVPLYKTARDWLEAYMYGARSQLIGKGRKSLRNPREEKALFVSIRGHRMSADVLRKMFE 242

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
              +  GL    T H +RH+FAT LLS G DLR +Q +LGH  LSTTQIYT+++ +    
Sbjct: 243 TYVKKAGLDPMLTPHAMRHTFATELLSGGADLRVVQELLGHQSLSTTQIYTHLSIER--- 299

Query: 309 WMMEIYDQTHPSIT 322
            + +   Q HP   
Sbjct: 300 -LKDAAKQAHPRSE 312


>gi|206901908|ref|YP_002251233.1| recombinase [Dictyoglomus thermophilum H-6-12]
 gi|206741011|gb|ACI20069.1| recombinase [Dictyoglomus thermophilum H-6-12]
          Length = 301

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 84/316 (26%), Positives = 148/316 (46%), Gaps = 19/316 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L +E +N++  L  ER  S  TL+SY  D   F  +           + +   +   +R
Sbjct: 4   DLKREIENYINYLRFERNYSPNTLRSYSRDLMDFYKYCKE--------KDLDFTNKRNVR 55

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           ++I     +   + +  R +  ++SF +YL   +   E   + +   K    LP+ L+  
Sbjct: 56  SYIQFIAQKNYKNSTFVRKVISLRSFFEYLLTFEKINEDLTVFIPTPKAEKKLPQFLSVD 115

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + + L+     ++      I  R+ AI+  LY  G+R+SE + +  ++I  +   +R+ G
Sbjct: 116 EVMKLL-----NSPSLDDLIGIRDRAIIETLYATGIRVSELVGMNEEDINWNYGEIRVFG 170

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K  K RIV +     K +  Y D     L    +   F   +G  ++    +  I++  +
Sbjct: 171 KRAKERIVIVGEETLKILQLYKDHVRPKLLKKPEKAFFLNAKGGRISDRAIRMIIKKYTK 230

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                   + HTLRH+FATHLL  G DLR +Q +LGH R+STTQIYT++ S+     + +
Sbjct: 231 --DFNKKVSPHTLRHTFATHLLEGGADLRYVQELLGHVRISTTQIYTHLTSEQ----IRK 284

Query: 313 IYDQTHPSITQKDKKN 328
            Y  +HP   +K+ K 
Sbjct: 285 TYTLSHPRAIKKETKE 300


>gi|197122574|ref|YP_002134525.1| tyrosine recombinase XerD [Anaeromyxobacter sp. K]
 gi|196172423|gb|ACG73396.1| tyrosine recombinase XerD [Anaeromyxobacter sp. K]
          Length = 298

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 89/310 (28%), Positives = 155/310 (50%), Gaps = 15/310 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
            L      +L ++ +E+GL++ ++++Y  D R++L  L     +++ +    ++   EI+
Sbjct: 3   ALEPALDLFLAHVRVEKGLAENSVEAYGRDLRRYLEHL-----DELGVDAWERVGRGEIQ 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           A +++   + +  RS  R+LS I+S  + L   ++T+      + + +    LP  L+  
Sbjct: 58  AHLAELVRRGLSPRSQARALSAIRSLHRLLAAERVTSADPSDEIESPRPGRRLPGLLSHD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L+                R+ A+L LLY  GLR+SE +SL   ++  +   L  +G
Sbjct: 118 EVDRLL-----AAPDVRSAAGIRDRAMLELLYATGLRVSELVSLQLNDVNLETRVLIARG 172

Query: 193 KGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG+K RIVP+     +A+  Y        L+      LF   RG  +    F + + +  
Sbjct: 173 KGNKERIVPVGAPAAEAVKAYLAVARERLLHGRRSKDLFVTPRGGRMTRQGFAKILDRCA 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R  G+    + H LRHSFATHLL  G DLR++Q +LGH  +STTQIYT+V+  +    + 
Sbjct: 233 RRAGIRRRISPHKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHVDRTH----VK 288

Query: 312 EIYDQTHPSI 321
            +YD+ HP  
Sbjct: 289 RLYDRFHPRA 298


>gi|189499552|ref|YP_001959022.1| integrase family protein [Chlorobium phaeobacteroides BS1]
 gi|189494993|gb|ACE03541.1| integrase family protein [Chlorobium phaeobacteroides BS1]
          Length = 330

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 94/317 (29%), Positives = 159/317 (50%), Gaps = 20/317 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +++ +  +R  S+ T ++Y  D  QF  FL+     +        ++  ++R F+    
Sbjct: 19  EFVEYMRAQRKYSEHTCKAYSKDITQFYEFLSLQHGGE-KAADPGLVTRIDMRLFLGFLL 77

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +  +S+ R L+ +KSF  YL +      S    +   + S ++P  LNE+Q  TL D
Sbjct: 78  KKGLQPKSIARKLASVKSFYNYLLETGRIKVSVPAQVVTPRFSKTVPGFLNEEQTETLFD 137

Query: 140 NVLLHTSH----------ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           ++L    H          E ++  +R+ AIL LLYGCGLRISE + L  + +  +Q  ++
Sbjct: 138 HILAAPQHLSGSSKNTRYEDEFTYSRDRAILELLYGCGLRISEVVHLEREQVNIEQGFMK 197

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           I GKG+K R++PL     +A+  Y+             ++    +F   +G  + P + Q
Sbjct: 198 INGKGNKQRVLPLGSYAVEALKNYFEVKRNFFRMKKGEVSAAAYVFVTKKGIGIYPVLVQ 257

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R  ++    +        H LRHSFATH+L+NG DL+S+  +LGH  L+TT+IYT+V   
Sbjct: 258 RLTKKYLSAVTELKYKNPHALRHSFATHMLNNGADLKSVSEMLGHANLTTTEIYTHVTF- 316

Query: 305 NGGDWMMEIYDQTHPSI 321
                + E+YD+ HP  
Sbjct: 317 ---GRVREVYDKAHPRA 330


>gi|169350427|ref|ZP_02867365.1| hypothetical protein CLOSPI_01195 [Clostridium spiroforme DSM 1552]
 gi|169292747|gb|EDS74880.1| hypothetical protein CLOSPI_01195 [Clostridium spiroforme DSM 1552]
          Length = 298

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 86/309 (27%), Positives = 149/309 (48%), Gaps = 16/309 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L K    +L  L+ ER  S  T+ SY  +   F ++L      +  I     + Y  +R 
Sbjct: 3   LDKLINEYLDCLKYERNYSNNTIASYRREIMHFKVYLV-----QEGISDYNDVDYLMLRG 57

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++K   + +   S+   LS ++SF  YL K +   ++    + + K     P  L +++
Sbjct: 58  YLTKLYDKNLAKSSINHRLSALRSFFDYLLKEEFIKDNPFKLIESQKVGQRNPDFLFQEE 117

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
            + L+D++          +  RN A+L L+Y  GLR SE  +L   +I  +Q  + + GK
Sbjct: 118 MIDLLDSI-----ETKDDLGIRNKAMLELMYASGLRCSEVANLQISDIDFNQMVVLVHGK 172

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G K R VP     R  +++Y D    +L +       +F    G PL     +  + ++ 
Sbjct: 173 GGKDRYVPFHEYARDWLVKYIDEARNNLMIKNAGHNFIFVNKLGNPLTNRGIENIVDRVT 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
                      HT+RHSFATHLL+ G D+R++Q +LGH  L+TTQ+YT+++  +    + 
Sbjct: 233 FKYDATKKIHPHTIRHSFATHLLNAGADIRTVQELLGHKNLATTQVYTHISKNH----LK 288

Query: 312 EIYDQTHPS 320
           ++Y +THP 
Sbjct: 289 KVYMKTHPR 297


>gi|298528177|ref|ZP_07015581.1| tyrosine recombinase XerD [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511829|gb|EFI35731.1| tyrosine recombinase XerD [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 310

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 82/310 (26%), Positives = 147/310 (47%), Gaps = 16/310 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             +++L++  + +GL+  T+ +Y  D   FL FL    ++ + I          +  ++ 
Sbjct: 10  HARSFLEHALVIKGLAHQTVAAYTEDLSTFLEFLQEKGKDVLDIND------QVLLVYLM 63

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             R + +  RSL R ++ ++ F  YL ++ +  ++    + N K    LPR L+  +  +
Sbjct: 64  FLRRKGLQSRSLARHMASLRGFYAYLHEQGLLKDNPAEMLENPKLPQLLPRVLSIPEVES 123

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           ++             + AR+  +L +LY  GLR+SE ++L   +       +R+ GKG +
Sbjct: 124 IL-----SQPSTGDKLGARDKTMLEMLYAAGLRVSELINLKVLDFDPQAGIIRVWGKGAR 178

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+VPL  S  + +  Y        +  +   +F    GK L+     + I++     G+
Sbjct: 179 ERLVPLHFSCMQWLDFYLQHWRSSFSPRVDK-VFINRSGKALSRQGVWKIIKKYTVMAGI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRHSFATHLL  G DLR++Q +LGH  ++ T+IYT+V      D +   +D 
Sbjct: 238 KKDVSPHTLRHSFATHLLEGGADLRTVQVLLGHSDITATEIYTHV----QSDRLKSAHDF 293

Query: 317 THPSITQKDK 326
            HP      K
Sbjct: 294 FHPRSKNTGK 303


>gi|261879004|ref|ZP_06005431.1| integrase/recombinase XerD [Prevotella bergensis DSM 17361]
 gi|270334388|gb|EFA45174.1| integrase/recombinase XerD [Prevotella bergensis DSM 17361]
          Length = 306

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 82/311 (26%), Positives = 152/311 (48%), Gaps = 16/311 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +++ L+++R  S  TL +Y+ D  + L FL      K+ +     +   +++ F +  
Sbjct: 11  KRYIRYLKLQRSYSPNTLDAYQRDLNKLLDFL-----RKVDVAPF-DVKLEDLQQFAASL 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               IG +S  R LSG+++F ++L             + +      LP  L   +   L 
Sbjct: 65  HEHGIGSKSQARILSGVRAFYRFLVLDGYLEVDPTELLESPHLPKHLPEYLTTDEVDMLQ 124

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D++ L T+        RN AI+ +L+ CGLR+SE  +L   ++  ++  +R+ GKG+K R
Sbjct: 125 DSIDLSTNE-----GHRNRAIIEVLFSCGLRVSELTNLKLSDLFLEEQFIRVMGKGNKER 179

Query: 199 IVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+     + +  ++D      +    +  +F   RG  L   +    I++     G+ 
Sbjct: 180 LVPISDRAIEELGYWFDDRRQMIIKPGEEDYVFLNRRGHHLTRTMILIMIKRQAEAAGIK 239

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + + HTLRHSFAT LL  G DLR IQ +LGH  + TT++YT++++ +    ++E     
Sbjct: 240 KTISPHTLRHSFATALLRGGADLRVIQDLLGHSNIGTTEMYTHLDNTSLRKDILE----H 295

Query: 318 HPSITQKDKKN 328
           HP   +   ++
Sbjct: 296 HPRNIKNKNQH 306


>gi|319937629|ref|ZP_08012033.1| tyrosine recombinase xerC [Coprobacillus sp. 29_1]
 gi|319807271|gb|EFW03883.1| tyrosine recombinase xerC [Coprobacillus sp. 29_1]
          Length = 301

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 83/313 (26%), Positives = 149/313 (47%), Gaps = 17/313 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +  K  Q +L  L+ ++  S LT+  Y+ +   F+++L      K  I   + + Y  +R
Sbjct: 3   QFDKYVQEYLDVLKYQKNYSSLTIDGYKREIEHFIVYL-----NKENICDFKDVRYPFLR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            ++++  ++ +  +++   +S ++   +YL+ +    ++  L + +LK+    P  L   
Sbjct: 58  GYLAQLHSENLSPKTINHKMSSLRGLYRYLQTQGYIDDNPFLLIDSLKQPLRNPDFLYID 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + + L+D++          +  RN A+L L+Y  GLR SE + LT   I  ++  L I G
Sbjct: 118 EMMDLLDSI-----DTQTLLGRRNKALLELMYASGLRCSEVVELTLSQIDFERQLLLIHG 172

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           KG+K R VP        +  Y +    +L          +F    G  +     +  + +
Sbjct: 173 KGNKDRYVPFHDYAADWLKTYIEEDRPELMAVKHLEHQFVFVNKNGAKMTNRGIEDIVNR 232

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           + +          HT RHSFATHLL  G D+R +Q +LGH  LSTTQIYT+V +++    
Sbjct: 233 VTQRYDATKKVHPHTFRHSFATHLLEQGVDIRVVQELLGHSNLSTTQIYTHVTNQH---- 288

Query: 310 MMEIYDQTHPSIT 322
           + E+YD  HP   
Sbjct: 289 LKEVYDHAHPRNK 301


>gi|227823255|ref|YP_002827227.1| site-specific tyrosine recombinase XerD [Sinorhizobium fredii
           NGR234]
 gi|227342256|gb|ACP26474.1| tyrosine recombinase XerD [Sinorhizobium fredii NGR234]
          Length = 313

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 92/317 (29%), Positives = 152/317 (47%), Gaps = 14/317 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
              + +L+ +  ERG +  TLQSYE D R  L FL            +   +  +++ ++
Sbjct: 7   AHLEAFLEMMSAERGAAINTLQSYERDLRDALAFLRSSGAR------LNSATADDLKRYL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           S    +     S  R LS ++ F K+L    +  +     +   KK+ +LP+ L+     
Sbjct: 61  SHLAGEGFKSSSQARRLSALRQFYKFLYAEGLRGDDPTGILDAPKKARALPKTLSIDDVT 120

Query: 136 TLVDNVLLHTSHETK--WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
            L+       +   +  +   R  A++ LLY  G+R+SE +SL    +  +   L I+GK
Sbjct: 121 RLIGQAEAEAAAGGEDAFARLRMHALIELLYATGMRVSELVSLPASVLAQNGRFLVIRGK 180

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRR 252
           G+K R+VPL  +  +A+  Y D             LF    +   L   VF R ++ L  
Sbjct: 181 GNKERLVPLSQAAIRAMRTYGDALRRRAAEAESPWLFPSSGKSGHLPRQVFARDLKSLAA 240

Query: 253 YLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             G+ ++  + H LRH+FA+HLL+NG DLR++Q +LGH  +STTQIYT+V  +     + 
Sbjct: 241 RAGIRVAVISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEER----LH 296

Query: 312 EIYDQTHPSITQKDKKN 328
           E+    HP   Q  K++
Sbjct: 297 ELVQNHHPLAKQAKKQD 313


>gi|330812552|ref|YP_004357014.1| Site-specific tyrosine recombinase XerC/Sss [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|34222931|sp|Q8VS06|XERC_PSEFL RecName: Full=Tyrosine recombinase xerC
 gi|1929097|emb|CAA72946.1| Sss/XerC protein [Pseudomonas fluorescens]
 gi|27652537|gb|AAO17715.1| site-specific recombinase [Pseudomonas fluorescens]
 gi|327380660|gb|AEA72010.1| Site-specific tyrosine recombinase XerC/Sss [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 299

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 86/310 (27%), Positives = 148/310 (47%), Gaps = 17/310 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++   + ++L  ER +S  TL +Y  D  + L +      +K  I +   L    +R+
Sbjct: 1   MERQLDAYCEHLRSERQVSPHTLSAYRRDLEKVLGWC-----QKQNIGSWAALDIQRLRS 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            I++   Q    RSL R LS ++    YL +  +        +   K    LP+ L+  +
Sbjct: 56  LIARLHQQGQSSRSLARLLSAVRGLYHYLNREGLCDHDPATGLAPPKGERRLPKTLDTDR 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           AL L++      + E  ++  R+ AIL L Y  GLR+SE   L    +      +++ GK
Sbjct: 116 ALQLLEG-----AVEDDFLARRDQAILELFYSSGLRLSELTGLNLDQLDLADGMVQVLGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R++P+    R+A+ ++  L    L       +F   +G+ L P   Q  ++     
Sbjct: 171 GSKTRLLPVGRKAREALEQWLPLR--ALTNPADDAVFVSQQGRRLGPRAIQLRVKAAGER 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L  +   H LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +
Sbjct: 229 -ELGQNLHPHMLRHSFASHLLESSQDLRAVQELLGHSDIKTTQIYTHLDFQH----LATV 283

Query: 314 YDQTHPSITQ 323
           YD  HP   +
Sbjct: 284 YDSAHPRAKR 293


>gi|311064002|ref|YP_003970727.1| integrase/recombinase [Bifidobacterium bifidum PRL2010]
 gi|310866321|gb|ADP35690.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum
           PRL2010]
          Length = 322

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 86/324 (26%), Positives = 151/324 (46%), Gaps = 25/324 (7%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +    ++ ++ +ERGL++ T+++YE D R++L +LA        I     +   +I  ++
Sbjct: 7   RLLDQFIAHISVERGLARATVRAYESDLRRYLSWLAHTR----GITDPDAIGKADIEEYV 62

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++  +     RS  R L+ I  F ++   +   ++     ++  K +  LP  L   +  
Sbjct: 63  AQLDSDGDSARSKARRLASIHEFHRFALAQHAVSDDVSATVKAPKSAQMLPDVLTIDEVS 122

Query: 136 TLVDN----VLLHTSHETKWIDA-------RNSAILYLLYGCGLRISEALSLTPQNIMDD 184
            L+D          +     I A       R+ A+L  +Y  G R+SEA+ +   +I  D
Sbjct: 123 RLLDAIPDPHGTDAARGRAGIGALPDAVLLRDRALLEFMYATGCRVSEAVGMNLDDIDID 182

Query: 185 QSTL-RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPL 238
            + + R+ GKG K R+VPL     +A+  Y       L    +       +F   RG+ L
Sbjct: 183 DAHVARLTGKGSKQRLVPLGEYACRALRRYLAEGRGTLEGRAKGTPERRAVFLNKRGRRL 242

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +       I+      G+      HTLRHSFATHL+  G D+R++Q +LGH  ++TTQIY
Sbjct: 243 SRQSVWEVIKLAGERAGIDRPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIY 302

Query: 299 TNVNSKNGGDWMMEIYDQTHPSIT 322
           T+V+ +     ++E Y  +HP   
Sbjct: 303 THVSPET----LIEAYLTSHPRAR 322


>gi|224282680|ref|ZP_03646002.1| Integrase [Bifidobacterium bifidum NCIMB 41171]
 gi|310287139|ref|YP_003938397.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum
           S17]
 gi|313139838|ref|ZP_07802031.1| tyrosine recombinase xerD [Bifidobacterium bifidum NCIMB 41171]
 gi|309251075|gb|ADO52823.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum
           S17]
 gi|313132348|gb|EFR49965.1| tyrosine recombinase xerD [Bifidobacterium bifidum NCIMB 41171]
          Length = 322

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 86/324 (26%), Positives = 151/324 (46%), Gaps = 25/324 (7%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +    ++ ++ +ERGL++ T+++YE D R++L +LA        I     +   +I  ++
Sbjct: 7   RLLDQFIAHISVERGLARATVRAYESDLRRYLSWLAHTR----GITDPDAIGKADIEEYV 62

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++  +     RS  R L+ I  F ++   +   ++     ++  K +  LP  L   +  
Sbjct: 63  AQLDSDGDSARSKARRLASIHEFHRFALAQHAVSDDVSATVKAPKSAQMLPDVLTIDEVS 122

Query: 136 TLVDN----VLLHTSHETKWIDA-------RNSAILYLLYGCGLRISEALSLTPQNIMDD 184
            L+D          +     I A       R+ A+L  +Y  G R+SEA+ +   +I  D
Sbjct: 123 RLLDAIPDPHGTDAARGRAGIGALPDAVLLRDRALLEFMYATGCRVSEAVGMNLDDIDID 182

Query: 185 QSTL-RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPL 238
            + + R+ GKG K R+VPL     +A+  Y       L    +       +F   RG+ L
Sbjct: 183 DAHVARLTGKGSKQRLVPLGEYACRALRRYLAEGRGTLEGRAKGTPDRRAVFLNKRGRRL 242

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +       I+      G+      HTLRHSFATHL+  G D+R++Q +LGH  ++TTQIY
Sbjct: 243 SRQSVWEVIKLAGERAGIDRPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIY 302

Query: 299 TNVNSKNGGDWMMEIYDQTHPSIT 322
           T+V+ +     ++E Y  +HP   
Sbjct: 303 THVSPET----LIEAYLTSHPRAR 322


>gi|325919208|ref|ZP_08181257.1| tyrosine recombinase XerD subunit [Xanthomonas gardneri ATCC 19865]
 gi|325550308|gb|EGD21113.1| tyrosine recombinase XerD subunit [Xanthomonas gardneri ATCC 19865]
          Length = 323

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 88/326 (26%), Positives = 148/326 (45%), Gaps = 24/326 (7%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
              LP + + +     + +L     E G+++ TL SY  D      +        +    
Sbjct: 13  AQQLPPLQAAD-ASAIERFLDRFWAENGVARQTLDSYRRDLEGLARWRDGAGGGLLG--- 68

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
              +    +  ++  R   +   RS  R LS +++F     +  + ++     +      
Sbjct: 69  ---VDRAAVFDYLRWRSEARYSPRSTARLLSTLRAFYGLCLREGLRSDDPTALIDPPHLP 125

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            SLP+AL E Q   L     L        +  R+ A+L L+Y  GLR+SE ++L    + 
Sbjct: 126 RSLPKALTESQIEAL-----LAAPDIDSPLGLRDRAMLELMYAAGLRVSELVNLPAVGVN 180

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-------NLNIQLPLFRGIRG 235
             Q  LR+ GKG K R+VPL    +  +  Y       L       +++ Q+PLF     
Sbjct: 181 LRQGVLRVTGKGSKDRLVPLGEESQHWLERYLHEARPLLASHKPVASVDGQVPLFVDAAR 240

Query: 236 KPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           +P +   F   +++     G+ P + + H LRHSFATHLL++G DLR++Q +LGH  LST
Sbjct: 241 QPPSRQQFWALVKRYAAVAGIDPDTVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLST 300

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPS 320
           TQIYT V  ++    + +++ + HP 
Sbjct: 301 TQIYTLVARQH----LQKLHAKHHPR 322


>gi|294648993|ref|ZP_06726441.1| site-specific tyrosine recombinase XerD [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292825128|gb|EFF83883.1| site-specific tyrosine recombinase XerD [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 333

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 94/320 (29%), Positives = 151/320 (47%), Gaps = 19/320 (5%)

Query: 2   EGNNLPEIVS-FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           +   +P  VS  E L   Q +   L  +  +S  T  +Y  D  Q               
Sbjct: 31  KKPRIPTAVSIPENLSFLQGFRDYLVAQ-TVSPHTRNAYLSDLIQCSELHRT-------- 81

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            ++ Q S  +I   + +        RS+ R LS ++ F K+L+++K+  ++ + +  + K
Sbjct: 82  ASLPQWSSEDIGDVLIELTKAGKSPRSIARCLSALRQFYKFLREQKLREDNPVASHHSPK 141

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
              +LP+ L+E+    L+     +    +  +  R+ A+  +LY CGLR+SE L+L  + 
Sbjct: 142 IGRALPKDLSEQDVEALI-----NAPDISTTLGLRDRAMFEVLYACGLRVSELLNLRLEL 196

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I   Q  +RI GKG+K R+VPL       I +Y       L  +    LF    G  ++ 
Sbjct: 197 INLKQGFVRITGKGNKERLVPLGQYACDWIEKYLAESRPQLYKSNTDYLFLTQHGGIMSR 256

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             F   I++      +    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+
Sbjct: 257 QNFWYAIKRYALQANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTH 316

Query: 301 VNSKNGGDWMMEIYDQTHPS 320
           V        M  ++ Q HP 
Sbjct: 317 VAQ----HRMQALHHQYHPR 332


>gi|325124215|gb|ADY83738.1| site-specific tyrosine recombinase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 306

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 90/320 (28%), Positives = 147/320 (45%), Gaps = 19/320 (5%)

Query: 2   EGNNLPEIVS-FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           +   +P  V   E L   Q +   L  +  +S  T  +Y  D  Q           +   
Sbjct: 4   KKPRIPSPVQIPEHLSFLQGFRDYLVAQ-TVSPHTRNAYLSDLIQCSELHKKSALPEWKS 62

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             I  +        + +        RS+ R LS ++ F K+L+++K+ +++ +    + K
Sbjct: 63  DDIADV--------LIELTKAGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPK 114

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
              +LP+ L+E+    L+             +  R+ A+  +LY CGLR+SE L+L  + 
Sbjct: 115 IGRALPKDLSEEDVEALI-----QAPDINTALGLRDRAMFEVLYACGLRVSELLNLRLEL 169

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I   Q  LRI GKG+K R+VPL     + +  Y       L  +    LF    G  ++ 
Sbjct: 170 INLKQGYLRITGKGNKERLVPLGQFACEWVERYLQDARPQLYKSSTDYLFLTQHGGIMSR 229

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             F   I++      +    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+
Sbjct: 230 QNFWYAIKRYALQANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTH 289

Query: 301 VNSKNGGDWMMEIYDQTHPS 320
           V        M +++++ HP 
Sbjct: 290 VAQVR----MQQLHEKHHPR 305


>gi|170730010|ref|YP_001775443.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa M12]
 gi|167964803|gb|ACA11813.1| site-specific recombinase [Xylella fastidiosa M12]
          Length = 277

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 85/295 (28%), Positives = 140/295 (47%), Gaps = 19/295 (6%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  TL +Y  D    + +        + +     L   +++AF+S    + +  +SL+R 
Sbjct: 2   SAHTLDAYRRDIGALIAWGGQQVVGDVVV-----LDRAQLQAFVSAEHRRGLSPKSLQRR 56

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           LS  + F  +L K      +    +R  K    LPR L+  +A++ V             
Sbjct: 57  LSACRGFYAWLVKSGHIAVNPAAGLRAPKALRKLPRILDADEAVSFVQIP------TDTP 110

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           +  R+ A+L L Y  GLR+SE   L    +  D   + + GKG + R+VP+      A+ 
Sbjct: 111 LGLRDRALLELFYSSGLRLSELCGLRWDGLDLDAGLVSVLGKGSRQRVVPVGSYALSALR 170

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           E+            Q P+F G  G P++    Q  I+QL +  G+      H LRHSFA+
Sbjct: 171 EW----CASSGGGAQQPVFPGRYGGPISARAVQVRIKQLAQRQGMAKHVHPHMLRHSFAS 226

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
           HLL + GDLR +Q +LGH  ++TTQIYT+++ +    ++ ++YD  HP   +K +
Sbjct: 227 HLLESSGDLRGVQELLGHADITTTQIYTHLDFQ----YLSKVYDAAHPRARRKAR 277


>gi|71274748|ref|ZP_00651036.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71901196|ref|ZP_00683299.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71164480|gb|EAO14194.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71729040|gb|EAO31168.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
          Length = 277

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 85/295 (28%), Positives = 141/295 (47%), Gaps = 19/295 (6%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  TL +Y  D    + +       ++ +     L   +++AF+S    + +  +SL+R 
Sbjct: 2   SAHTLDAYRRDIGALIAWGGQQVVGEVVV-----LDRAQLQAFVSAEHRRGLSPKSLQRR 56

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           LS  + F  +L K      +    +R  K    LPR L+  +A++ V             
Sbjct: 57  LSACRGFYAWLVKSGHIAVNPAAGLRAPKALRKLPRILDADEAVSFVQIP------TDTP 110

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           +  R+ A+L L Y  GLR+SE   L    +  D   + + GKG + R+VP+      A+ 
Sbjct: 111 LGLRDRALLELFYSSGLRLSELCGLRWDGLDLDAGLVSVLGKGSRQRVVPVGSYALSALR 170

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           E+            Q P+F G  G P++    Q  I+QL +  G+      H LRHSFA+
Sbjct: 171 EW----CASSGGGAQQPVFPGRYGGPISARAVQVRIKQLAQRQGMAKHVHPHMLRHSFAS 226

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
           HLL + GDLR +Q +LGH  ++TTQIYT+++ +    ++ ++YD  HP   +K +
Sbjct: 227 HLLESSGDLRGVQELLGHADITTTQIYTHLDFQ----YLSKVYDAAHPRARRKAR 277


>gi|291536378|emb|CBL09490.1| tyrosine recombinase XerD subunit [Roseburia intestinalis M50/1]
 gi|291538752|emb|CBL11863.1| tyrosine recombinase XerD subunit [Roseburia intestinalis XB6B4]
          Length = 294

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 86/308 (27%), Positives = 149/308 (48%), Gaps = 16/308 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  +  ++++ +  E+  SK T  SYE D R+   +L     E   +  +  ++ T + A
Sbjct: 1   MTHDIMDFIEYIHNEKQTSKNTEVSYERDLRKMNEYL-----EAQNVYGVSAVTETNLNA 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++     +     ++ RS++ +K+F  +L+K +         ++  K   ++PR L  ++
Sbjct: 56  YVMFLEREGRKPATVSRSIASMKAFFHFLEKERRIESDPAWRLKAPKIEKTMPRILTTEE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++    +T  E +     + A+L LLY  G+R+SE +SL   ++      + I   
Sbjct: 116 VTLLLEQPSGNTPKELR-----DKAMLELLYATGIRVSELISLKVSDLNLQMEYV-ICTD 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRR 252
             K RI+P     R+A+  Y       L      P LF    G  ++   F + I+   +
Sbjct: 170 IHKERIIPFGNVAREALTRYMQDGRDHLISQADCPWLFTNCTGGAMSRQGFWKLIKFYGK 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    T HTLRHSFA HL+SNG DL+S+Q +LGH  +STTQIY    S+ G   + E
Sbjct: 230 KAGIESEITPHTLRHSFAAHLISNGADLKSVQEMLGHSDISTTQIY----SQMGQGRIRE 285

Query: 313 IYDQTHPS 320
           +Y + HP 
Sbjct: 286 VYLKAHPR 293


>gi|298571314|gb|ADI87658.1| tyrosine recombinase XerC [uncultured Nitrospirae bacterium MY2-1F]
 gi|298571415|gb|ADI87756.1| tyrosine recombinase XerC [uncultured Nitrospirae bacterium
           MY3-11A]
          Length = 288

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 148/305 (48%), Gaps = 25/305 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +E+E+  S  TL++Y+ D  +F  F+          +    +   +IR F++ +  Q + 
Sbjct: 1   MEVEKNASPHTLRAYKKDLEEFAAFVK---------KDPASVDLYDIRGFVAAQSKQGLA 51

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S+ R LS +K+F  YL      T +    + + K    LP  L++    T+++     
Sbjct: 52  KSSVMRRLSTVKAFFNYLASIGAVTANPTRLVPSPKVPKHLPNFLSKDDTFTMME----- 106

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
            +    +  ARN AIL L Y  GLR+SE      ++I   Q+ ++++GKG K RIVP+  
Sbjct: 107 KAEGIGFTAARNKAILELFYSSGLRVSELAGADMESINLKQAMVKVRGKGKKERIVPIGS 166

Query: 205 SVRKAILEYYDLCPFDLNLNIQ-------LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
               A+  Y            +         LF    G+ L     +R + +  R  G+ 
Sbjct: 167 YALGALKTYLVERLLIKEDTTRPRISTDPAALFINSSGERLTDRHIRRIVVKFARLTGVE 226

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            +   HTLRH+FATHLL +G DLR IQ +LGH  LSTTQ YT+++ ++    +M++Y++ 
Sbjct: 227 GAVGPHTLRHTFATHLLQSGADLRVIQELLGHASLSTTQKYTHLDIQH----LMDVYEKC 282

Query: 318 HPSIT 322
           HP   
Sbjct: 283 HPLAE 287


>gi|296268973|ref|YP_003651605.1| integrase family protein [Thermobispora bispora DSM 43833]
 gi|296091760|gb|ADG87712.1| integrase family protein [Thermobispora bispora DSM 43833]
          Length = 292

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 145/305 (47%), Gaps = 19/305 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            + + L +ER LS  T+++Y  D       L     E+     I +L  T++RA++ ++ 
Sbjct: 4   AFERYLRLERDLSPHTVRAYLGDVASLFAHLRATGRER-----IAELDITDLRAWLGEQH 58

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +   +L R ++  ++F  +  +R          +   K    LP  L ++QA     
Sbjct: 59  RAGLSRTTLARRIACARTFTAFCHRRGWLAHDPGPLLGTTKAERRLPAVLTQEQAQA--- 115

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              L         + R+ AI+ LLY  G+R+SE  +L   ++  +++T+R+ GKG K R 
Sbjct: 116 --ALSPPVSGDPKELRDHAIMELLYATGIRVSELCALDLGDVDRERNTIRVMGKGRKERT 173

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP- 257
           VP      +A+  +          +   P LF G+RG  ++PG  +R +    R  G+P 
Sbjct: 174 VPFGQPAARALDAWCVRGRPQWVRDGTPPALFLGVRGGRIDPGTVRRVVH--ARLAGVPG 231

Query: 258 -LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H +RH+ ATHLL  G DLRS+Q ILGH  L+TTQ+YT+V+ +     +   Y Q
Sbjct: 232 APGMGPHGIRHTMATHLLEGGADLRSVQEILGHASLATTQLYTHVSIER----LRAAYRQ 287

Query: 317 THPSI 321
            HP  
Sbjct: 288 AHPRA 292


>gi|113461442|ref|YP_719511.1| site-specific tyrosine recombinase XerC [Haemophilus somnus 129PT]
 gi|112823485|gb|ABI25574.1| tyrosine recombinase XerC subunit [Haemophilus somnus 129PT]
          Length = 291

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 94/307 (30%), Positives = 161/307 (52%), Gaps = 17/307 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +   L IER LS  TL +Y+    + ++ L     ++  IQ+ +Q++ + +R  +++ 
Sbjct: 2   QKYYNYLRIERQLSPYTLINYQRQLEKIVVIL-----QQNDIQSWQQVTPSVVRFVLAQS 56

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R + + +RSL   LS ++ FL YL  +     ++ + +   K+S  LP+ ++ +Q   L+
Sbjct: 57  RKEGLHERSLALRLSALRQFLNYLVVQGELKVNSAVGISAPKQSKYLPKNMDMEQVQQLL 116

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                 T+   + ID R+ A++ L+Y  GLR+SE  SL   +I      +R+ GKG+K R
Sbjct: 117 ------TNESKEPIDLRDKAMMELMYSSGLRLSELQSLNLNSINIRSREVRVIGKGNKER 170

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           I+P      +AI ++  +    L       LF    G  ++    Q+ +       GL  
Sbjct: 171 ILPFGRYASQAIQQWLKVR--LLFNPKDEALFVSQLGNRISHRSIQKRMETWGIRQGLNG 228

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRHSFATH+L N  DLR++Q +LGH  LSTTQIYT+++ ++    + ++YD+ H
Sbjct: 229 HLNPHKLRHSFATHMLENSSDLRAVQELLGHSNLSTTQIYTHLDFQH----LAQVYDKAH 284

Query: 319 PSITQKD 325
           P   +K 
Sbjct: 285 PRAKRKK 291


>gi|238853068|ref|ZP_04643460.1| tyrosine recombinase XerC [Lactobacillus gasseri 202-4]
 gi|238834316|gb|EEQ26561.1| tyrosine recombinase XerC [Lactobacillus gasseri 202-4]
          Length = 307

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 92/319 (28%), Positives = 145/319 (45%), Gaps = 15/319 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S E  K  + +   L  ER  SK T+ SY  D  +   F      E     +  ++   
Sbjct: 1   MSKENDKLIEQFQDYLNYERNYSKNTVSSYLNDLDEAKQFFK----ENGGFGSWDKVKSR 56

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++  F+     Q     +  R +S ++SF ++L KR++     +  +        LP+  
Sbjct: 57  DVEIFLQSLAAQNRSRTTQARKMSSLRSFYRFLVKREVLENDPMQTISLRLGEKKLPQFF 116

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            EK+   + D+++ H       +  RN A+  L Y  G+R+SE  SL    I      + 
Sbjct: 117 YEKEMRQVFDSLVGH-----DKLVVRNRAMFELFYATGMRLSEMASLKLDQIDFGLKIIL 171

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYI 247
           + GKG+K R VP       A+ EY D     L    +    +F   RG+ L     +  +
Sbjct: 172 VHGKGNKDRYVPFGKDAFDALREYRDDVRPALLGQNEDLGYVFLNNRGQKLTGRGIEYIM 231

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +Q+    G+      H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V  K+  
Sbjct: 232 QQVFIKAGVGGKVHPHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKH-- 289

Query: 308 DWMMEIYDQTHPSITQKDK 326
             +   Y +  P   +KD+
Sbjct: 290 --LQADYQKFFPRKDKKDE 306


>gi|297584028|ref|YP_003699808.1| tyrosine recombinase XerC [Bacillus selenitireducens MLS10]
 gi|297142485|gb|ADH99242.1| tyrosine recombinase XerC [Bacillus selenitireducens MLS10]
          Length = 303

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 86/306 (28%), Positives = 148/306 (48%), Gaps = 17/306 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++++ L+IE+G S  T+  Y+ D   F   +          + +  +++ +IR +++  
Sbjct: 14  RDYMRYLQIEKGASPSTISQYQKDICAFFQNMDHT-------KPVEDVNHQDIRRYLALL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +      R++ R L+ ++S  ++L++      +  L +   K    LP  L E +   + 
Sbjct: 67  QKDGYARRTVARKLASLRSLWRFLEREGRIQLNPFLYVTTPKLDKKLPSFLYENEMQAIF 126

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D            + ARN AI+ LLY  G+R SE   L  ++I  D STL + GKG K R
Sbjct: 127 D-----AIDTDSLLGARNLAIIELLYASGIRASECTGLKLKDIDLDLSTLLVMGKGKKER 181

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
            +P+     +A+  Y D        + Q  PLF   RG  L     ++ + ++     L 
Sbjct: 182 FLPVGSFAVEALSLYLDKRTAKFGPHAQSDPLFINYRGGALTDRGLRKILAKVIEDASLT 241

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T H +RH+FATH+L+ G DLR++Q +LGH  L  TQIYT+V      D + ++Y  +
Sbjct: 242 SKLTPHVIRHTFATHMLNEGADLRTVQELLGHTDLKATQIYTHVT----RDRLRDVYRHS 297

Query: 318 HPSITQ 323
           HP   +
Sbjct: 298 HPRAKK 303


>gi|261405985|ref|YP_003242226.1| integrase family protein [Paenibacillus sp. Y412MC10]
 gi|261282448|gb|ACX64419.1| integrase family protein [Paenibacillus sp. Y412MC10]
          Length = 294

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 94/304 (30%), Positives = 150/304 (49%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              ++Q LE E+GLS+ T+ SY  D + FL F A        +   R+++ T +  ++ +
Sbjct: 5   LDEYVQYLEDEKGLSRSTIASYRADLQGFLAFAAERE-----VTHPREVNRTLLGLYVGR 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R Q     SL R  + ++SF +YL ++ +  +     + N K     P++L  +Q   L
Sbjct: 60  LRQQGKAASSLLRCTASLRSFFQYLVRQAVIVQDPTQLLDNPKPERKPPKSLTVEQVDKL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +               AR+ A+L LLY  G+++SE ++L+  +I  +   LR    G K 
Sbjct: 120 L-----SAPDSGTPQGARDKAMLELLYASGIKVSELVNLSIHDIHLEMRFLRCAVSGGKE 174

Query: 198 RIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RI+P+ P   +++  Y  D+    +    +  LF    G  L    F + I++  +  G+
Sbjct: 175 RILPITPIAAESVAFYVRDMRDKLMRDAGEDALFLNSLGTRLTRQGFWKIIKKYGKLAGI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               T HTLRHSFA HLL NG DLRS+Q +LGH  LSTT +Y     ++    M E+YD 
Sbjct: 235 DEDITPHTLRHSFAMHLLGNGADLRSVQEMLGHSALSTTGMY-----QSAKKSMKEVYDH 289

Query: 317 THPS 320
            HP 
Sbjct: 290 YHPR 293


>gi|29348252|ref|NP_811755.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253569382|ref|ZP_04846792.1| integrase [Bacteroides sp. 1_1_6]
 gi|298386055|ref|ZP_06995612.1| tyrosine recombinase XerD [Bacteroides sp. 1_1_14]
 gi|29340155|gb|AAO77949.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251841401|gb|EES69482.1| integrase [Bacteroides sp. 1_1_6]
 gi|298261283|gb|EFI04150.1| tyrosine recombinase XerD [Bacteroides sp. 1_1_14]
          Length = 319

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 90/314 (28%), Positives = 153/314 (48%), Gaps = 18/314 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + Q L++E+ LS  TL +Y  D  + + FL            + ++  ++++ F + 
Sbjct: 17  IRKYQQYLKLEKSLSPNTLDAYLTDLDKLMSFLTLEGI------DVLEVCLSDLQRFAAG 70

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I  RS  R LSGIKSF ++L             +   K    LP  L  ++   +
Sbjct: 71  LHDIGIHPRSQARILSGIKSFFRFLIMADYLEADPSELLEGPKIGLKLPEVLTVEEIDNI 130

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +      +   +K    RN AIL  LY CGLR+SE +SL   ++  D+  ++++GKG K 
Sbjct: 131 I-----SSVDRSKAEGQRNRAILETLYSCGLRVSELVSLKLSDLYFDEGFIKVEGKGSKQ 185

Query: 198 RIVPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLG 255
           R+VP+ P     I  Y+      ++  + +  +F   R    L+  +    I++L +  G
Sbjct: 186 RLVPISPRAINEIKLYFLDRNRIEVKKDYEDFVFVSQRRGKSLSRIMIFHMIKELAQNAG 245

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++       ++E   
Sbjct: 246 ITKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIE--- 302

Query: 316 QTHPS-ITQKDKKN 328
             HP  I  + +K 
Sbjct: 303 -HHPRNIKYRREKE 315


>gi|46143623|ref|ZP_00134812.2| COG4973: Site-specific recombinase XerC [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|190151161|ref|YP_001969686.1| tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|303250058|ref|ZP_07336260.1| site-specific tyrosine recombinase XerC [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303253232|ref|ZP_07339381.1| site-specific tyrosine recombinase XerC [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|254799324|sp|B3GZ58|XERC_ACTP7 RecName: Full=Tyrosine recombinase xerC
 gi|189916292|gb|ACE62544.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|302647914|gb|EFL78121.1| site-specific tyrosine recombinase XerC [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302651121|gb|EFL81275.1| site-specific tyrosine recombinase XerC [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 306

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 86/315 (27%), Positives = 157/315 (49%), Gaps = 17/315 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L  + + +   L IE+  S+ TL +Y+         L+     +  I T ++++   +R 
Sbjct: 8   LYLQTKPYWDYLRIEKQASQHTLSNYQRQLLAVSDMLS-----QAGISTWQEVNSATVRW 62

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            I++   Q +G +S+   L  ++ +  YL +++  + +  + ++  K S  LP+ ++ +Q
Sbjct: 63  IIAQSNKQGLGAKSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQ 122

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+      TS   +  D R+ A++ L+Y  GLR+SE   L   ++      +R+ GK
Sbjct: 123 IGQLL------TSDSHEPSDLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGK 176

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K RIVP+     +A+  +  +            +F   RG  L+    Q  +++    
Sbjct: 177 GNKERIVPIGSKALEALNRWLAVRNQ--FKPQDNAVFLNKRGGRLSHRSIQLVMQKWGEK 234

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL      H LRHSFATH+L   GDLR++Q +LGH  L+TTQIYT+++ ++    + +I
Sbjct: 235 QGLESHLHPHKLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQH----LAKI 290

Query: 314 YDQTHPSITQKDKKN 328
           YD  HP   +K + +
Sbjct: 291 YDAAHPRAKRKKQDD 305


>gi|293610050|ref|ZP_06692351.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827282|gb|EFF85646.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 306

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 91/320 (28%), Positives = 148/320 (46%), Gaps = 19/320 (5%)

Query: 2   EGNNLPEIVS-FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           +   +P  V   E L   Q +   L  +  +S  T  +Y  D  Q           + T 
Sbjct: 4   KKPRIPSPVQIPEHLSFLQGFRDYLVAQ-TVSPHTRNAYLSDLIQCSELHKKSLLPEWTS 62

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             I  +        + +        RS+ R LS ++ F K+L+++K+ +++ +    + K
Sbjct: 63  DNIADV--------LIELTKVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPK 114

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
              +LP+ L+E+    L+             +  R+ A+  +LY CGLR+SE L+L  + 
Sbjct: 115 IGRALPKDLSEEDVEALI-----QAPDINTALGLRDRAMFEVLYACGLRVSELLNLRLEL 169

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I   Q  LRI GKG+K R+VPL     + +  Y       L  +    LF    G  ++ 
Sbjct: 170 INLKQGYLRITGKGNKERLVPLGQFACEWVERYLQDARPQLYKSSTDYLFLTQHGGIMSR 229

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             F   I++      +    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+
Sbjct: 230 QNFWYAIKRYALQANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTH 289

Query: 301 VNSKNGGDWMMEIYDQTHPS 320
           V        M +++++ HP 
Sbjct: 290 VAQVR----MQQLHEKHHPR 305


>gi|163814162|ref|ZP_02205554.1| hypothetical protein COPEUT_00316 [Coprococcus eutactus ATCC 27759]
 gi|158450611|gb|EDP27606.1| hypothetical protein COPEUT_00316 [Coprococcus eutactus ATCC 27759]
          Length = 292

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 73/308 (23%), Positives = 144/308 (46%), Gaps = 16/308 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +    +++ L   +  S+ T+ SY  D  +F+ +          +  +  ++ T I +
Sbjct: 1   MEQYIDRYVEYLRNVKKSSENTIASYRRDLMKFVAYFCDKH-----LDRLEDITETYITS 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++       +   ++ R+++ IKSF  +L + +I  +    N++  K    +P  L   +
Sbjct: 56  YVLDMEKNGMSMATVSRNIASIKSFYAFLLRERIVDDDPAENIKPPKIVKKVPEILTISE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+      T  E +     + A+L LLY  G+R++E ++L   ++      +     
Sbjct: 116 VNKLLSQPTNKTPKEIR-----DKAMLELLYATGIRVTELVTLKLTDVNMKLGFIECHD- 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GD++R VP+    ++A+  Y      D++      LF   +G P++   F + I+     
Sbjct: 170 GDRVRTVPVAEVAQRALSRYITEVRDDMSGG-SDYLFFNCKGAPMSRQGFWKIIKYYAAK 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    T H +RHSFA+H+L+NG D++S+Q +LGH  ++TTQIY      N    + E 
Sbjct: 229 AGIDKDITPHMIRHSFASHMLNNGADIKSVQEMLGHVDIATTQIYL----TNKQSKLKEE 284

Query: 314 YDQTHPSI 321
           Y + +P  
Sbjct: 285 YAKAYPRA 292


>gi|223985629|ref|ZP_03635679.1| hypothetical protein HOLDEFILI_02985 [Holdemania filiformis DSM
           12042]
 gi|223962396|gb|EEF66858.1| hypothetical protein HOLDEFILI_02985 [Holdemania filiformis DSM
           12042]
          Length = 323

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 106/326 (32%), Positives = 151/326 (46%), Gaps = 19/326 (5%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E    +L+   + +++ +   R  S  T  SY  D  +F  +LA        I    Q+ 
Sbjct: 9   EAAKKQLMSVAEEFVEFIVARRSGSPATADSYGRDLERFAAYLAEKK-----ITDFSQVD 63

Query: 68  YTEIRAFISKRRTQKI-----GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
              +  +++  R+ KI      D S  R LS ++SF  YL + K    +    +R  K +
Sbjct: 64  KAVMFDYVTLLRSGKITRCKISDSSFSRMLSTLRSFYHYLIRYKGVKVNPTRGLRAPKLN 123

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            ++P  L   Q +TL D+  L+          RN AIL  +Y CGLR+SE  SLT   + 
Sbjct: 124 RTIPEFLTFDQMMTLFDSFDLNDPA-----ALRNRAILETMYACGLRVSEVCSLTLAELD 178

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
            ++  L + GKGDK RIVP    +R  +  Y               +F   RG P+ P  
Sbjct: 179 LNERILTVTGKGDKQRIVPFYKRLRTLLTRYLRDSRALYLKEEHGFVFVSQRGAPITPRA 238

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            Q  + Q  +  GL      H LRHSFATHLL NG DLR++Q +LGH  LSTTQIYT+V 
Sbjct: 239 VQLILAQAGQDAGLNQPLHPHILRHSFATHLLDNGVDLRTVQELLGHSSLSTTQIYTHVT 298

Query: 303 SKNGGDWMMEIYDQTHPSITQKDKKN 328
                D + +  D  HP      KK+
Sbjct: 299 ----VDRLKQSVDAAHPHSKSVLKKS 320


>gi|325570911|ref|ZP_08146560.1| site-specific tyrosine recombinase XerC [Enterococcus casseliflavus
           ATCC 12755]
 gi|325156315|gb|EGC68498.1| site-specific tyrosine recombinase XerC [Enterococcus casseliflavus
           ATCC 12755]
          Length = 312

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 96/307 (31%), Positives = 148/307 (48%), Gaps = 17/307 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ + + L +ERG S+ T ++Y+ D   F  FL     E         + Y ++R ++S 
Sbjct: 20  QEEFFRYLIVERGYSEKTKKAYQEDMGDFFHFLKESGNE-----DPLAVEYRDVRVYLSY 74

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              ++    S+ R ++ ++SF ++L K +I  E+    +   KK+  LPR   EK+   L
Sbjct: 75  LTEREYSRNSISRKMASLRSFYQFLTKHEIVKENPFAYIHLKKKNAKLPRFFYEKEMDAL 134

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
             +V        + +  RN A+L +LYG GLR+SE  SLT   I  +   L I GKG+K 
Sbjct: 135 FQSV-----AGDEPLQQRNQALLEVLYGSGLRVSECSSLTLGAIDWESGVLLIHGKGNKD 189

Query: 198 RIVPLLPSVRKAILEYYDLCP---FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           R VP     + A+  Y         +        LF    G  +     +  + Q+ R  
Sbjct: 190 RYVPFGSYAQAAVKRYLSSGRKQLMEKQNKEHEILFVNHLGDGITATGIEYVLNQIIRKS 249

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            L      H LRH+FATHLL+NG D+R++Q +LGH  LSTTQIY +V      D + + Y
Sbjct: 250 SLDSKIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVT----KDSLQKNY 305

Query: 315 DQTHPSI 321
            Q HP  
Sbjct: 306 RQFHPRA 312


>gi|302335678|ref|YP_003800885.1| integrase family protein [Olsenella uli DSM 7084]
 gi|301319518|gb|ADK68005.1| integrase family protein [Olsenella uli DSM 7084]
          Length = 308

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 86/316 (27%), Positives = 149/316 (47%), Gaps = 18/316 (5%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
              + +L    + +L +L + R LS+ T+++Y  D   +  +      + +       ++
Sbjct: 6   AAATPDLDALLRRFLSDLSVTRNLSENTIRAYGTDLAAYARWTRRQGVDPL------DVT 59

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
           ++++RA++ +    +   R+L R LS I++  ++L +   T +     + + K + +LP+
Sbjct: 60  HSQLRAYLGELVRARYSSRTLNRRLSAIRTLYRWLVREGYTNKDAAAAIASPKVARTLPK 119

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            + +          LL    E   I  R+ A++ LLY  G RISE   L   +I  ++  
Sbjct: 120 TMTDPDV-----CQLLGACDEDGVIGLRDRALIELLYASGARISEISRLDVGDIDRERRQ 174

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQ 244
           + + GKG K RIVPL       +  Y       L +  +     LF   RG+ ++    +
Sbjct: 175 VTLLGKGGKERIVPLYDMCIDELDAYLLTARPALVVRGEGASEALFVSTRGRRMSAAALR 234

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
               +  R  GL    T H +RH++AT LLS G DLRS+Q +LGH  LSTTQIYT+++  
Sbjct: 235 EAFERRVRLAGLDADITPHAMRHTYATELLSGGADLRSVQELLGHSSLSTTQIYTHLS-- 292

Query: 305 NGGDWMMEIYDQTHPS 320
              D +     Q HP 
Sbjct: 293 --VDRLKAAARQAHPR 306


>gi|219683210|ref|YP_002469593.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|219620860|gb|ACL29017.1| probable integrase [Bifidobacterium animalis subsp. lactis AD011]
          Length = 344

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 90/332 (27%), Positives = 150/332 (45%), Gaps = 25/332 (7%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           + + +   +  ++L ER  +++ L   RGLS+ T  +Y  D  Q L  L     +     
Sbjct: 26  QSHEMEGAMDAQVLMER--FIEYLRSNRGLSEHTCMAYRGDILQCLEAL-----DAFGRG 78

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
               ++  ++R ++  R    +G  SL R    ++SF  +  +  +   +    +R  K 
Sbjct: 79  NPDDVTLDDLRMWMG-RMAHTVGKTSLARKTIAVRSFFTWAYEHGMLAHNPAHALRTPKI 137

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHET-----------KWIDARNSAILYLLYGCGLRI 170
             +LP  LNE QA  L+D V      +                 R+ A+L LLY  G+R+
Sbjct: 138 DRNLPAVLNEDQAERLMDTVDAEAGEKNAGKSKDDALNAHAKALRDCAMLELLYATGMRV 197

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPL 229
            E + L   +      T+R+ GKG+K R++P     ++A+  +     P   N N    +
Sbjct: 198 GELVGLDMGSFDWSNRTVRVLGKGNKTRVIPFGAPAQQAVEHWLHGGRPVFANGNSGNAV 257

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F G+RG  ++  V ++ + +     G+P   + H LRHS ATH+L  G DLR +Q +LGH
Sbjct: 258 FIGVRGCRIDQRVVRQVVHEQAEQAGVP-DISPHALRHSAATHMLDGGADLREVQEMLGH 316

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
             L TTQ Y +V+ +   D     Y Q  P  
Sbjct: 317 SSLQTTQRYAHVSIEQLKDR----YRQAFPRA 344


>gi|300361600|ref|ZP_07057777.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03]
 gi|300354219|gb|EFJ70090.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03]
          Length = 307

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 94/319 (29%), Positives = 146/319 (45%), Gaps = 15/319 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S E  K  + +   L  ER  SK T+ SY  D  +   F      E        ++   
Sbjct: 1   MSKENDKLIKQFQDYLNYERNYSKNTVSSYLNDLDEAKQFFK----ENGGFSGWDKVKSR 56

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++  F+    TQ     +  R +S ++SF ++L KR++     +  +        LP+  
Sbjct: 57  DVEIFLQNLATQNRSRTTQARKMSSLRSFYRFLVKREVLENDPMQTISLRLGEKKLPQFF 116

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            EK+   + D+++ H       +  RN A+  L Y  G+R+SE  SL    I  D   + 
Sbjct: 117 YEKEMRQVFDSLVGH-----DRLVVRNRAMFELFYATGMRLSEMASLKLDQIDFDLKIIL 171

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYI 247
           + GKG+K R VP       A+ EY D     L    +    +F   RG+ L     +  +
Sbjct: 172 VHGKGNKDRYVPFGKDALDALKEYRDDVRPALLGQNEDLGYVFLNNRGQKLTGRGIEYIM 231

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +Q+    G+      H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V  K+  
Sbjct: 232 QQVFIKAGVGGKVHPHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKH-- 289

Query: 308 DWMMEIYDQTHPSITQKDK 326
             +   Y +  P   +KD+
Sbjct: 290 --LQADYQKFFPRKDKKDE 306


>gi|330752024|emb|CBL80536.1| tyrosine recombinase [uncultured Flavobacteria bacterium]
          Length = 323

 Score =  252 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 93/307 (30%), Positives = 156/307 (50%), Gaps = 16/307 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +   ++   L+IERGLS+ ++ +Y  D  + + ++       I I  I  +    ++ FI
Sbjct: 30  QAIIHYQNYLKIERGLSENSIANYTFDINKLVKWMVI---NDIKISPIN-IEKETLQEFI 85

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                +++  RS  R +SG+K F  YL   +  T + +  + + K    LP  L+ ++  
Sbjct: 86  -YTIAKELNPRSQSRIISGLKGFFNYLVFEEYRTTNPLDLIESPKIGRKLPDILSIEEID 144

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            ++      T   TK    RN  I+ +LYGCGLR+SE ++L   ++  D+  +++ GKG+
Sbjct: 145 AII-----STIDLTKPQGERNRGIIEVLYGCGLRVSELINLKISDLFFDEGFIKVTGKGN 199

Query: 196 KIRIVPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R VP+     K I  Y +       +  N Q  LF   RG  L   +    +++L   
Sbjct: 200 KQRFVPIGSLTIKFIDIYRNEIRVHQVIKPNAQDTLFLNRRGNGLTRAMIFHIVKELTEK 259

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    + HT RHSFATHLL NG DLR+IQ +LGH  ++TT+IYT+++  +    + +I
Sbjct: 260 AGIHKKISPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEIYTHIDKSH----LTQI 315

Query: 314 YDQTHPS 320
            +  HP 
Sbjct: 316 INNFHPR 322


>gi|145635531|ref|ZP_01791230.1| tyrosine recombinase [Haemophilus influenzae PittAA]
 gi|145267194|gb|EDK07199.1| tyrosine recombinase [Haemophilus influenzae PittAA]
          Length = 295

 Score =  252 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 93/312 (29%), Positives = 152/312 (48%), Gaps = 17/312 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +L     +   L IER +S  T+ +Y+      +  LA     +  I    Q++ + +R 
Sbjct: 1   MLTALNRYWDYLRIERQMSPHTITNYQHQLDAIIKILA-----QQDIHAWTQVTPSVVRF 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            +++ + Q + ++SL   LS ++ FL +L ++     +    +   K+   LP+ ++ +Q
Sbjct: 56  ILAESKKQGLKEKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQ 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+       +   + ID R+ AIL L+Y  GLR+SE   L   +I      +R+ GK
Sbjct: 116 VQQLL------ANDSKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R+VP       AI E+  +    L       LF    G  ++    Q+ +      
Sbjct: 170 GNKERVVPFGRYASHAIQEWLKVR--ALFNPKDEALFVSQLGNRISHRAIQKRLETWGIR 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL      H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    + E+
Sbjct: 228 QGLNSHLNPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEM 283

Query: 314 YDQTHPSITQKD 325
           YDQTHP   +K 
Sbjct: 284 YDQTHPRAKRKK 295


>gi|217977361|ref|YP_002361508.1| integrase family protein [Methylocella silvestris BL2]
 gi|217502737|gb|ACK50146.1| integrase family protein [Methylocella silvestris BL2]
          Length = 329

 Score =  252 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 133/315 (42%), Positives = 181/315 (57%), Gaps = 7/315 (2%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
                EL    + WL +L  ER +++LTL +Y  D RQFL F A +     ++  +  LS
Sbjct: 20  APADAELASCARAWLAHLGGERRVAELTLAAYSRDLRQFLSFAAIHFGAPPSLAMVSTLS 79

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
             ++RAF++ RR   +G RSL R L+G++SF  YL++  +   + +  +R  K    LP+
Sbjct: 80  PADLRAFMAARRAAGVGSRSLLRQLAGLRSFTHYLQRSGVQQSAALGAVRAPKAPRRLPK 139

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS-LTPQNIMDDQS 186
            L    A  +             WI AR++A+L LLYG GLRISEALS L     + ++ 
Sbjct: 140 PLTAAAACAVTSVESRAGEDRPTWILARDAAVLGLLYGAGLRISEALSILRADAPIGERD 199

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           TLRI GKG KIR  P++  VR+A+  Y  LCP+ L    +  LF G +G PL+P + Q  
Sbjct: 200 TLRITGKGGKIREAPVIAPVRQAVEAYLKLCPYHL--PPERHLFVGAKGGPLSPRIIQLA 257

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           + ++R  LGLP S T H LRHSFATHLLS GGDLRSIQ +LGH  LSTTQIYT V+S   
Sbjct: 258 VERMRGALGLPDSATPHALRHSFATHLLSRGGDLRSIQELLGHASLSTTQIYTAVDSAR- 316

Query: 307 GDWMMEIYDQTHPSI 321
              ++E Y   HP  
Sbjct: 317 ---LIEAYRSAHPRA 328


>gi|260464185|ref|ZP_05812378.1| tyrosine recombinase XerC [Mesorhizobium opportunistum WSM2075]
 gi|259029988|gb|EEW31271.1| tyrosine recombinase XerC [Mesorhizobium opportunistum WSM2075]
          Length = 312

 Score =  252 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 141/322 (43%), Positives = 190/322 (59%), Gaps = 11/322 (3%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+   +P     +L   R+ WL+ L  ER LS  T+++YE DTRQFL FL  +      I
Sbjct: 1   MQEFLIP--AKPDLQAAREGWLKMLARERRLSPETVEAYERDTRQFLHFLTGHCGGSPGI 58

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             I  L   ++R F++ RR    G R+L R L+GI+S L++L++R +   +    +R  +
Sbjct: 59  SDIANLRPADLRGFLAARRNAGAGARTLGRGLAGIRSLLRFLERRGLANAAGAAALRAPR 118

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +  SLP+ L    A  +V   +     E  WI ARN+A+L LLYG GLRISEAL L   +
Sbjct: 119 QPKSLPKPLTASDAKHVV--SVEGQLAEEPWIAARNAAVLTLLYGSGLRISEALGLAGAD 176

Query: 181 IMDDQST-LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           +  +  T LR+ GKG K R+VP+LP   +AI EY  LCP  L+      LFRG RG PLN
Sbjct: 177 LASEADTVLRVTGKGGKTRLVPVLPVALRAIAEYRRLCPHHLDPKGL--LFRGARGGPLN 234

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           P + QR + +LR  L LP + T H LRHSFATHLL  GGDLR+IQ +LGH  LSTTQIYT
Sbjct: 235 PAIIQRDMAKLRSALNLPDTATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQIYT 294

Query: 300 NVNSKNGGDWMMEIYDQTHPSI 321
            V++      ++EIY+  HP  
Sbjct: 295 GVDTTR----LLEIYESAHPRA 312


>gi|260905256|ref|ZP_05913578.1| tyrosine recombinase XerD [Brevibacterium linens BL2]
          Length = 315

 Score =  252 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 79/322 (24%), Positives = 140/322 (43%), Gaps = 20/322 (6%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LPE+ +  L +  + +L +L  ERGLS+ ++ +Y  D  ++  +L         +  + +
Sbjct: 9   LPELPAS-LARAFETYLNSLRFERGLSRNSIDAYARDLARYGTWL-----NGQGMSHLGE 62

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +  T + AF      + +  R+  R+L  ++ F  +     +        +   ++   L
Sbjct: 63  VERTHVEAFALHLLDENLAPRTRARALVAVRRFHGFALGEGLAATDPASEVSPPQEGLRL 122

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P+AL+      ++         + +             Y  G RISEA+ +   ++  + 
Sbjct: 123 PKALSLDDIEAMLATTGGEEPAQIRAAALLELL-----YATGARISEAVGVDLDDLDLET 177

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNP 240
           S +R+ GKG K RIVP       A+  +       +    +       LF   RG  L+ 
Sbjct: 178 SLVRLYGKGGKERIVPFGSHAATALGAWVSRTRPSMAAKARSSAPAGALFLNARGTRLSR 237

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               + ++      GL    + HT RHSFATHLL  G D+R +Q +LGH  ++TTQIYT 
Sbjct: 238 QTAWQIVKDAGELAGLEAEVSPHTFRHSFATHLLEGGADIRVVQELLGHASVTTTQIYTK 297

Query: 301 VNSKNGGDWMMEIYDQTHPSIT 322
           V+ +     + E+Y  +HP   
Sbjct: 298 VSEET----LREVYATSHPRAR 315


>gi|333029569|ref|ZP_08457630.1| Tyrosine recombinase xerC [Bacteroides coprosuis DSM 18011]
 gi|332740166|gb|EGJ70648.1| Tyrosine recombinase xerC [Bacteroides coprosuis DSM 18011]
          Length = 305

 Score =  252 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 91/311 (29%), Positives = 153/311 (49%), Gaps = 16/311 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +LL+   N+ Q L++E+ LS  TL +Y  D  +    + +  +EK+++ TI   + + ++
Sbjct: 10  QLLRVINNYRQYLKLEKSLSPNTLDAYLSDLDKL---VKYANDEKLSLFTI---TLSNLQ 63

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            FI+      I  RS  R +SGIKSF  +L   +   ++    + + K    +P  L   
Sbjct: 64  NFIANLHDIGIHPRSQARIISGIKSFYHFLLLEEYIEDNPADLLDSPKIGFKVPEVLTLA 123

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   +++ V + T+        RN AIL  LY CGLR+SE  +L    +  D   + + G
Sbjct: 124 EIDAIINVVDVSTAE-----GQRNRAILETLYSCGLRVSELTNLKISKLYFDDGYVIVDG 178

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG K R+VP+     + I  Y       +     +  LF   RG  L+  +    +++  
Sbjct: 179 KGSKQRLVPISNRAIQEIKYYLMDRGMSIIKKGSEDTLFLNRRGTGLSRVMIFNIVKKYS 238

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               +  + + HT RHSFATHLL  G +LR+IQS+LGH  ++TT+IYT+++       ++
Sbjct: 239 EEAEISKNVSPHTFRHSFATHLLEGGANLRAIQSMLGHESITTTEIYTHLDKSLIRQEIL 298

Query: 312 EIYDQTHPSIT 322
           E     HP   
Sbjct: 299 E----YHPRNK 305


>gi|330818124|ref|YP_004361829.1| Tyrosine recombinase XerD [Burkholderia gladioli BSR3]
 gi|327370517|gb|AEA61873.1| Tyrosine recombinase XerD [Burkholderia gladioli BSR3]
          Length = 392

 Score =  252 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 88/306 (28%), Positives = 138/306 (45%), Gaps = 17/306 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +    +   L +E GLSK TL +Y  D   F  +LA   E      ++  +S   + A+I
Sbjct: 102 QAIDLFCDALWLEHGLSKNTLDAYRRDLTLFAQWLAQTHE-----ASLDVVSEPILTAYI 156

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           + R   K    S  R LS  + +  +  +         L + + K++   P  L+E Q  
Sbjct: 157 AARSDGK--ATSSNRRLSVFRRYYGWALREHRAAADPTLRVLSAKQAPRFPSTLSEGQVE 214

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+             +  R+  +L L+Y  GLR+SE ++L    +  +   +R+ GKG 
Sbjct: 215 ALL-----GAPEVETALGLRDRTMLELMYASGLRVSELVTLKTVEVGLNDGVVRVMGKGS 269

Query: 196 KIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K R+VP        I  Y     P  L       LF   RG+ +    F   I++     
Sbjct: 270 KERLVPFGEVAHGWIERYLREARPALLGARASDALFVTARGEGMTRQQFWNIIKRHALRA 329

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            +    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++
Sbjct: 330 EIRAHLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARER----LRSLH 385

Query: 315 DQTHPS 320
            Q HP 
Sbjct: 386 AQHHPR 391


>gi|311068135|ref|YP_003973058.1| site-specific tyrosine recombinase XerC [Bacillus atrophaeus 1942]
 gi|310868652|gb|ADP32127.1| site-specific tyrosine recombinase XerC [Bacillus atrophaeus 1942]
          Length = 304

 Score =  252 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 87/308 (28%), Positives = 147/308 (47%), Gaps = 17/308 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +++ L+IE+  S+ T+ +Y     +F  FL         I    + +Y + R F+++   
Sbjct: 11  FVEYLQIEKNYSQYTIVNYVDSIEEFETFLRVQR-----INGFEEAAYHDTRIFLTEAYE 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  R++ + +S ++SF K+L + K+  E+    +   K+   +P+ L +K+   L   
Sbjct: 66  KGLSRRTISKKISALRSFYKFLMREKLVEENPFQLVHLPKQEKRIPKFLYQKELEELF-- 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                S  +     R+ A+L LLY  G+R+SE  SLT   +     T+ + GKG K R +
Sbjct: 124 ---AVSDTSLPTGQRDQALLELLYATGMRVSECSSLTVNGVDLFMDTVLVHGKGKKQRYI 180

Query: 201 PLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           P      +A+  Y +       +        LF   RG PL     +  +  L +     
Sbjct: 181 PFGSYAHEALELYVNSGRQRLLEKAKESHDVLFVNQRGGPLTVRGVRYILSGLVKKASGT 240

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           L    H LRH+FATHLL+ G DLRS+Q +LGH  LS+TQIYT+V+ +     +   Y   
Sbjct: 241 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKE----MLRNTYMSH 296

Query: 318 HPSITQKD 325
           HP   ++ 
Sbjct: 297 HPRAFKEK 304


>gi|54310573|ref|YP_131593.1| site-specific tyrosine recombinase XerC [Photobacterium profundum
           SS9]
 gi|46915016|emb|CAG21791.1| putative integrase/recombinase XerC [Photobacterium profundum SS9]
          Length = 313

 Score =  252 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 85/314 (27%), Positives = 153/314 (48%), Gaps = 16/314 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +   L K  Q + + +  ER LS  T Q+Y+         L  +      +     +   
Sbjct: 13  LPTALEKPLQFFYEYIRSERELSLHTQQNYKRQLSTIAEQLVSFE-----VTDWTMVDAG 67

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R   SK     +   S+   LS ++SF  +L ++ I   +    +   +K+  LP+ L
Sbjct: 68  WVRQIASKGMRDGLKASSISMRLSALRSFFDFLVQKDILKANPAKGVAAPRKARPLPKNL 127

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  +   L+      + +E   +  R+ A++ L+YG GLR++E +SL  ++I   +  +R
Sbjct: 128 DVDEMDQLL------SVNEDDPLSIRDRAMMELMYGAGLRLAELVSLNVRDISLSKGDIR 181

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKGDK RIVP     R+ +  +  +    L    ++ LF    G  ++    Q+ + +
Sbjct: 182 VIGKGDKERIVPFAGLAREWVANWLKVR-GALASGDEVGLFVSKLGTRISTRNVQKRMAE 240

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +   +      H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++    
Sbjct: 241 WGQKQAVSSHINPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH---- 296

Query: 310 MMEIYDQTHPSITQ 323
           + ++YD+ HP   +
Sbjct: 297 LAKVYDEAHPRAKR 310


>gi|163791334|ref|ZP_02185747.1| site-specific recombinase, phage integrase family protein
           [Carnobacterium sp. AT7]
 gi|159873413|gb|EDP67504.1| site-specific recombinase, phage integrase family protein
           [Carnobacterium sp. AT7]
          Length = 299

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 94/304 (30%), Positives = 149/304 (49%), Gaps = 17/304 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +LQ L  ER  S+LT ++YE D   F  FL    +          ++  ++R ++ +   
Sbjct: 10  FLQYLITERHYSELTKKAYEEDITHFESFLNQTGD-----TNFSNVTLQDVRIYLGELNE 64

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q +   S+ R +S +++F ++L K ++  ++    +   KK+  LP+   EK+   L + 
Sbjct: 65  QGLSRNSISRKISSMRAFYQFLLKNQLVEDNPFSYIHLKKKTLRLPKFFYEKEMDALFE- 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                    K +D RN AIL +LYG G+R+SE   +  ++I  D S L I GKG+K R V
Sbjct: 124 ----AVKGEKPLDFRNEAILEILYGTGIRVSECSGIQLKDIDFDLSVLLIHGKGNKERYV 179

Query: 201 PLLPSVRKAILEYYDLCPFDLNLN---IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           P       A+ +Y +     L          LF    G P+     +  + Q+ +   L 
Sbjct: 180 PFGHYAAVAMRDYMEKSRTPLMAKYKKSHDLLFVNHHGDPITSTGIEYVLNQVIKKSSLT 239

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRHSFATHLL+NG D+R++Q +LGH  LS+TQIY +V  +     + + Y Q 
Sbjct: 240 SDIHPHMLRHSFATHLLNNGADMRTVQELLGHASLSSTQIYAHVTKER----LQKNYRQF 295

Query: 318 HPSI 321
           HP  
Sbjct: 296 HPRA 299


>gi|167756958|ref|ZP_02429085.1| hypothetical protein CLORAM_02507 [Clostridium ramosum DSM 1402]
 gi|167703133|gb|EDS17712.1| hypothetical protein CLORAM_02507 [Clostridium ramosum DSM 1402]
          Length = 312

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 89/310 (28%), Positives = 159/310 (51%), Gaps = 14/310 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                + Q L +E+GLSK T+ SY  D   F  F+     E+  I  I  ++   I  ++
Sbjct: 15  DALSEYKQYLIVEKGLSKNTIYSYLRDLIAFSNFIG----EEYEINQIENINKEHIHLYL 70

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            +  ++     S+ R L  ++    +L K  I  E+ + +    K+   LP  L++++ +
Sbjct: 71  KEL-SKTNCTNSISRKLVSLRMLYIFLVKENIVKENLMSSFTLPKRDKKLPIVLSQEEMI 129

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            ++D +++        I +RN  ++ LLY  G+RISE L+LT +++      +++ GKG+
Sbjct: 130 EILDGIIV-----CDAISSRNRCMVELLYATGMRISELLNLTLKDLNIKMGFIKVIGKGN 184

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R++P+   V + + +Y +    + N+     LF    G+ L+   F   ++ +     
Sbjct: 185 KERMIPIGSYVGEILEQYINDYRAEFNIKNDSLLFFNKHGQRLSREEFYSILQTIVNSTS 244

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + HT RH+FATHLL NG DLRSIQ +LGH  +STT IYT+++++     +   Y 
Sbjct: 245 ITKKVSPHTFRHTFATHLLENGADLRSIQELLGHSDISTTTIYTHISNQ----KIRSEYQ 300

Query: 316 QTHPSITQKD 325
           Q HP I + +
Sbjct: 301 QFHPRIKKHN 310


>gi|116747518|ref|YP_844205.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
 gi|189030087|sp|A0LEB8|XERC_SYNFM RecName: Full=Tyrosine recombinase xerC
 gi|116696582|gb|ABK15770.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
          Length = 328

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 93/307 (30%), Positives = 146/307 (47%), Gaps = 10/307 (3%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            ++ +L  ERGLS  T+++Y  D  QF   +            + Q+    IR +++   
Sbjct: 24  RFIAHLRHERGLSAETVRAYAGDLDQFREHMNATAG--TADPRLSQVDADAIRGYLAALH 81

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +     S  R LS ++SF  +L  R++  E+    +   K    +P  L       L+D
Sbjct: 82  -KTRKKTSRARKLSTLRSFYHFLNDRELVRENPAALVAYPKLGTKIPSFLGVDDVFHLLD 140

Query: 140 NVLLHTSH-ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           ++    +     W   RN A+   +Y  G+R+SE   +   ++   +  +R+ GKG K R
Sbjct: 141 SLNAGAARAGASWRRCRNWALFECMYSTGVRVSELAGMDESDVDFHEGMVRVLGKGSKER 200

Query: 199 IVPLLPSVRKAILEYYDL--CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           IVP+      A+  Y  +    F     +   LFR  RG+ L      R +R   R  GL
Sbjct: 201 IVPVGGKALDAVKLYLRVLDSQFPEARRMGSALFRNARGRRLTTRSVHRLLRMELRRCGL 260

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL++G DLR+IQ +LGH  LSTTQ YT+V+     D +M++YD 
Sbjct: 261 WQHLSPHGLRHTFATHLLNSGADLRAIQEMLGHSNLSTTQRYTHVH----VDQLMKVYDA 316

Query: 317 THPSITQ 323
            HP   +
Sbjct: 317 AHPRSRR 323


>gi|114705350|ref|ZP_01438258.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506]
 gi|114540135|gb|EAU43255.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506]
          Length = 323

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 86/309 (27%), Positives = 149/309 (48%), Gaps = 18/309 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+ + +ERG +  TLQ+Y  D      FL  +         + +     IRA+++ 
Sbjct: 19  IEAFLEMMAVERGAADNTLQAYARDLDAARSFLKPHGG-------LMRADSDAIRAYLTS 71

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + + + +  R LS ++   ++L      T+     +   +K   LP+ ++E +   L
Sbjct: 72  LSAEGLSESTRSRRLSALRQLYRFLYTEGRRTDDPTSPIEGARKKRPLPKVMSEDEVDRL 131

Query: 138 VDNVLLHTSHETKWIDARNSAI-----LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +D     T+       +R  AI     + LLY  GLR+SE +SL    +++   T+ + G
Sbjct: 132 LDLAEAETNDAELSPSSRVRAIRLRVLVELLYATGLRVSELVSLPKSMLVNRARTITVLG 191

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLR 251
           KG+K R+VP+  + R+++  Y          N    LF        L+  VF R ++ L 
Sbjct: 192 KGNKERLVPIGAAARESLDAYGQALKAAGLNNEGPWLFPADSESGHLSRQVFARELKGLA 251

Query: 252 RYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              G+     + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V  +     +
Sbjct: 252 ARTGISAAKISPHVLRHAFASHLLQNGADLRAVQELLGHADISTTQIYTHVLEER----L 307

Query: 311 MEIYDQTHP 319
            ++  + HP
Sbjct: 308 HKLVTEHHP 316


>gi|120436224|ref|YP_861910.1| tyrosine recombinase [Gramella forsetii KT0803]
 gi|117578374|emb|CAL66843.1| tyrosine recombinase [Gramella forsetii KT0803]
          Length = 298

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 90/306 (29%), Positives = 152/306 (49%), Gaps = 16/306 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             +++   L++ERGLS+ ++ +Y  D  + + +L      +I I +  ++S   I+ FI 
Sbjct: 6   ALKDYQYYLKLERGLSENSIANYSLDVIKLINYLDV---NEIQI-SPDKISEKWIQEFI- 60

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              ++ +  RS  R +SG++SF  YL       ++ +  M + K    LP  ++  +   
Sbjct: 61  YSVSKDLNARSQSRLISGLRSFFSYLLFEDYRKDNPLDLMESPKIGRKLPDTISIAEVDK 120

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           ++          +K    RN AI+  LYGCGLR+SE   L   ++   +  +++ GKGDK
Sbjct: 121 II-----AAIDLSKNEGERNRAIIETLYGCGLRVSELTDLKISDLFFKEGFIKVTGKGDK 175

Query: 197 IRIVPLLPSVRKAILEY--YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            R VP+     K I  Y        D+       LF   RG  L   +    +++L    
Sbjct: 176 QRFVPISEYTVKFINLYKDQVRNHQDIKPEATDTLFLNRRGNKLTRAMIFTIVKKLTEVA 235

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+    + HT RHSFATHLL NG DLR+IQ +LGH  ++TT++Y +V+  +    + ++ 
Sbjct: 236 GISKKVSPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEVYVHVDRSH----LRQVM 291

Query: 315 DQTHPS 320
           +Q HP 
Sbjct: 292 EQFHPR 297


>gi|294664569|ref|ZP_06729911.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292605653|gb|EFF48962.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 323

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 90/326 (27%), Positives = 149/326 (45%), Gaps = 24/326 (7%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
             +LP +   +     + +L     E+G+++ TL+SY  D      +        + I  
Sbjct: 13  ARHLPPVQPAD-ASVIERFLDRFWAEQGVARQTLESYRRDLEGLARWRDGAGGGLLGI-- 69

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
                   +  ++  R       RS  R LS +++F     +  + ++     +   +  
Sbjct: 70  ----DRAALFDYLRWRTRANYSPRSTARLLSTLRAFYGLCLRDGVRSDDPTALIDPPQLP 125

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            SLP+AL E Q   L+                R+ A+L L+Y  GLR+SE ++L    + 
Sbjct: 126 RSLPKALTESQIEALL-----AAPDLDTPAGLRDRAMLELMYAAGLRVSELVNLPAVGVN 180

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-------QLPLFRGIRG 235
             Q  LR+ GKG K R+VPL    +  +  Y       L  N        Q+PLF  +  
Sbjct: 181 LRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARPLLAANKPVTAVDGQVPLFIDVSR 240

Query: 236 KPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           +PL+   F   +++     G+ P++ + H LRHSFATHLL++G DLR++Q +LGH  LST
Sbjct: 241 QPLSRQQFWALVKRYAAAAGIDPVTVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLST 300

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPS 320
           TQIYT V  ++    + +++   HP 
Sbjct: 301 TQIYTLVARQH----LQKLHASHHPR 322


>gi|256851129|ref|ZP_05556518.1| tyrosine recombinase XerC [Lactobacillus jensenii 27-2-CHN]
 gi|260660553|ref|ZP_05861468.1| tyrosine recombinase XerC [Lactobacillus jensenii 115-3-CHN]
 gi|282932232|ref|ZP_06337676.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1]
 gi|297205994|ref|ZP_06923389.1| tyrosine recombinase XerC [Lactobacillus jensenii JV-V16]
 gi|256616191|gb|EEU21379.1| tyrosine recombinase XerC [Lactobacillus jensenii 27-2-CHN]
 gi|260548275|gb|EEX24250.1| tyrosine recombinase XerC [Lactobacillus jensenii 115-3-CHN]
 gi|281303627|gb|EFA95785.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1]
 gi|297149120|gb|EFH29418.1| tyrosine recombinase XerC [Lactobacillus jensenii JV-V16]
          Length = 302

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 94/309 (30%), Positives = 146/309 (47%), Gaps = 14/309 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   L  ERG S LTL +Y  D +Q   F               Q+S  ++  FI+ 
Sbjct: 7   LEQFKDYLAYERGYSNLTLTAYINDLKQAEDFWKNNG----GFNGFEQVSSRDVEIFITS 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             +  +   S  R LS +KS  K+L +R +        +   +KS  LP    E +   +
Sbjct: 63  LASAGLSQASQARKLSSLKSLYKFLTRRNLVAVDPTQTVSIHRKSKKLPEFFYEPEIKKV 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D+  L  S +      RN A+  L Y  G+R+SE  +LT Q +  D   + + GKG+K 
Sbjct: 123 LDS--LSASDKFT---VRNKAMFELFYATGMRVSEVSNLTLQQVDFDVQMILVHGKGNKD 177

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R VP     + ++L Y +      N +     +F   RG  L     +  +R++ +  GL
Sbjct: 178 RYVPFGDYAKASLLRYLNEARSLFNPDENNHFVFLDNRGHQLTSRGIEYIMRKVFQKGGL 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             +   H LRH+FAT +L+NG DLRS+Q +LGH  LSTTQIYT+V  +     + + Y++
Sbjct: 238 SANVHPHELRHTFATQMLNNGADLRSVQELLGHESLSTTQIYTHVTMER----LQKDYEK 293

Query: 317 THPSITQKD 325
             P    KD
Sbjct: 294 FFPRNEGKD 302


>gi|226951750|ref|ZP_03822214.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244]
 gi|226837540|gb|EEH69923.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244]
          Length = 306

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 94/320 (29%), Positives = 151/320 (47%), Gaps = 19/320 (5%)

Query: 2   EGNNLPEIVS-FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           +   +P  VS  E L   Q +   L  +  +S  T  +Y  D  Q               
Sbjct: 4   KKPRIPTAVSIPENLSFLQGFRDYLVAQ-TVSPHTRNAYLSDLIQCSELHRT-------- 54

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            ++ Q S  +I   + +        RS+ R LS ++ F K+L+++K+  ++ + +  + K
Sbjct: 55  ASLPQWSSEDIGDVLIELTKAGKSPRSIARCLSALRQFYKFLREQKLREDNPVASHHSPK 114

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
              +LP+ L+E+    L+     +    +  +  R+ A+  +LY CGLR+SE L+L  + 
Sbjct: 115 IGRALPKDLSEQDVEALI-----NAPDISTTLGLRDRAMFEVLYACGLRVSELLNLRLEL 169

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I   Q  +RI GKG+K R+VPL       I +Y       L  +    LF    G  ++ 
Sbjct: 170 INLKQGFVRITGKGNKERLVPLGQYACDWIEKYLAESRPQLYKSNTDYLFLTQHGGIMSR 229

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             F   I++      +    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+
Sbjct: 230 QNFWYAIKRYALQANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTH 289

Query: 301 VNSKNGGDWMMEIYDQTHPS 320
           V        M  ++ Q HP 
Sbjct: 290 VAQ----HRMQALHHQYHPR 305


>gi|25028473|ref|NP_738527.1| site-specific tyrosine recombinase XerC [Corynebacterium efficiens
           YS-314]
 gi|34222795|sp|Q7ZAK0|XERC_COREF RecName: Full=Tyrosine recombinase xerC
 gi|23493758|dbj|BAC18727.1| putative phage integrase/recombinase XerC [Corynebacterium
           efficiens YS-314]
          Length = 310

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 86/309 (27%), Positives = 152/309 (49%), Gaps = 21/309 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ++L+  +++   L +  G S  T++ Y  D R              TI  + + +   +R
Sbjct: 23  QMLEAIEDFCDYLILVVGRSDATVRGYRSDLRHMAA----------TIPDLTEFTLPNLR 72

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           A++ +   +     +L R  + +KSF  +  K  + +      + + K + +LPR L E 
Sbjct: 73  AWLGRAVEEGKSRATLARRTASVKSFSTWAVKNGLISGDEAARLVSPKVTRNLPRVLGEV 132

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           QA   + +    T  E +     +SAIL LLY  G+R+SE   L   ++   +  +R+ G
Sbjct: 133 QAGEFMGSAAADTEDEFRR----DSAILELLYATGMRVSELCGLDLGDVDHHRRMVRVLG 188

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KGDK R++P   +   A+ ++ +    D    ++  +F G+RG  ++    +R + +  +
Sbjct: 189 KGDKERMIPFGKAAADALEQWLEAR--DRMAKVEDAMFVGVRGGRIDARQIRRIVDRTAQ 246

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G     + H+LRH+ ATHLL  G DLR +Q +LGH  L TTQIYT+V+S+     ++E
Sbjct: 247 VAG-ADHLSPHSLRHTAATHLLDGGADLRQVQEMLGHSSLQTTQIYTHVSSQR----LLE 301

Query: 313 IYDQTHPSI 321
            + Q HP  
Sbjct: 302 AFRQAHPRA 310


>gi|294674930|ref|YP_003575546.1| tyrosine recombinase XerD [Prevotella ruminicola 23]
 gi|294472077|gb|ADE81466.1| tyrosine recombinase XerD [Prevotella ruminicola 23]
          Length = 303

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 86/311 (27%), Positives = 158/311 (50%), Gaps = 16/311 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +++ L+++R +S  TL +Y+ D R+ L +L            I  ++  ++  F + 
Sbjct: 8   VKAYVRYLKLQRNMSGNTLDAYQRDLRKLLDYLEHEQ------LAISDVTLADLEHFSAS 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I  RS  R LSGI+SF K+++      +     + + +  + LP  L  ++   L
Sbjct: 62  LHDIGIHPRSQCRILSGIRSFFKFVQLDGYRDDDPTELLESPQIGDHLPEVLTTQEVDRL 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            +++ L     +KW   RN AI+ +L+ CGLR+SE ++L   ++  D+  +R+ GKG K 
Sbjct: 122 EESIDL-----SKWEGHRNRAIIEVLFSCGLRVSELVNLKLSDLYLDEEYVRVLGKGSKE 176

Query: 198 RIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+ P   + +  ++++     +    +  +F   RG  L   +    I+   +   +
Sbjct: 177 RLVPISPKAIQELRFWFNVRNLMKIKPGEEDYVFLNRRGAHLTRTMILIMIKAQAKEARI 236

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HTLRHSFAT LL  G DLR IQ++LGH  + TT+IYT++++      ++E    
Sbjct: 237 QKTISPHTLRHSFATALLEGGADLRFIQALLGHEDIGTTEIYTHIDTSTLRQEILE---- 292

Query: 317 THPSITQKDKK 327
            HP   + + K
Sbjct: 293 HHPRNKKTNLK 303


>gi|229824242|ref|ZP_04450311.1| hypothetical protein GCWU000282_01546 [Catonella morbi ATCC 51271]
 gi|229786596|gb|EEP22710.1| hypothetical protein GCWU000282_01546 [Catonella morbi ATCC 51271]
          Length = 331

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 91/314 (28%), Positives = 156/314 (49%), Gaps = 13/314 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +    +LQ + +ER  S+ TL +Y+ D   F  F+     E      ++Q++Y ++R 
Sbjct: 30  MQEAIARFLQYISVERRYSQKTLAAYQQDLAAFQSFI-----ETSGGGDLKQIAYQDVRL 84

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++    Q     S++R LS ++SF  Y   +     + +  ++   K  +LP+   E++
Sbjct: 85  YLAYLNEQAYAKTSIRRKLSSLRSFFTYCLSQGWIETNPMELVQYQVKKKTLPQFFYEQE 144

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L D++             R+  +L +LY  G+R+SE   L+ + +  +   +R+ GK
Sbjct: 145 LTQLFDSLYKREDD----AAWRDRMLLEVLYATGMRVSELSELSLERLNLEVQLIRVLGK 200

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K RIVPL  S  +AI +Y       ++ N    L    +G P++P   +  ++ L   
Sbjct: 201 GNKERIVPLGDSATQAIRDYLSHLRPKIDRNNSPYLLLTDKGAPMSPRQIRTRLKSLVEE 260

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             + L    H LRHSFATHLL+ G DLR++Q +LGH  LS+TQIYT+V      D +   
Sbjct: 261 QAMNLKIYPHKLRHSFATHLLNKGADLRTVQELLGHANLSSTQIYTHVT----KDQLRSQ 316

Query: 314 YDQTHPSITQKDKK 327
           Y + HP   Q  + 
Sbjct: 317 YLKAHPRAKQAKQD 330


>gi|124267211|ref|YP_001021215.1| tyrosine recombinase XerD subunit [Methylibium petroleiphilum PM1]
 gi|124259986|gb|ABM94980.1| tyrosine recombinase XerD subunit [Methylibium petroleiphilum PM1]
          Length = 309

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 86/318 (27%), Positives = 151/318 (47%), Gaps = 17/318 (5%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           + LP + +   +     +L+ L +E GLS  TL +Y  D   +  +L   + + +     
Sbjct: 7   DELPPLPADSAV-AIDAFLEALWVEDGLSDNTLAAYRRDLTLYARWLVHASGKPLDGS-- 63

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
                 ++RA+  +R        S  R L+  + + ++  +    +    L +   K+  
Sbjct: 64  ---GEADLRAYALERHA-GTRATSANRRLTVFRRYFRWALREHRLSADPTLKLLAAKQPL 119

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            +P+ L+E Q   L++            +  R+ A+L +LY  GLR+SE ++L   N+  
Sbjct: 120 RVPKTLSEAQVEALLE-----APDVDTPLGLRDRAMLEILYASGLRVSELVTLKSVNVGY 174

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGV 242
            ++ LR+ GKG K R+VP        ++ Y        L       LF   RG P+    
Sbjct: 175 SEAALRVTGKGSKERLVPFGEEAHGWLMRYLAEARAAILGGQASDALFVTARGGPMTRQA 234

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           F + I++     G+ +  + HTLRH+FATHLL++G DLR++Q +LGH  +STT IYT+V 
Sbjct: 235 FWQLIKRHAGAAGIQVPLSPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVA 294

Query: 303 SKNGGDWMMEIYDQTHPS 320
            +     + +++ Q HP 
Sbjct: 295 RER----LKQLHSQHHPR 308


>gi|329667430|gb|AEB93378.1| putative integrase/recombinase [Lactobacillus johnsonii DPC 6026]
          Length = 307

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 95/319 (29%), Positives = 146/319 (45%), Gaps = 15/319 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S E  K  + +   L  ER  SK T+ SY  D  +   F      E        Q+   
Sbjct: 1   MSKENDKLIKQFQDYLNYERNYSKNTVNSYLNDLIEAKDFFR----ENGGFSGWDQVKSR 56

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++  F+    TQ     +  R +S ++SF ++L KR++     +  +        LP+  
Sbjct: 57  DVEIFLQNLATQNRSRTTQARKMSSLRSFYRFLVKREVLENDPMQTISLRLGEKKLPQFF 116

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            EK+   + D++  H     + +  RN A+  L Y  G+R+SE  SL    I  D   + 
Sbjct: 117 YEKEMRQVFDSLAGH-----EKLVVRNRAMFELFYATGMRLSEMASLKLDQIDFDLKIIL 171

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYI 247
           + GKG+K R VP       A+ EY D     L    +    +F   RG+ L     +  +
Sbjct: 172 VHGKGNKDRYVPFGKDAASALKEYCDESRLALLGKNEDLGYVFLNNRGQKLTGRGIEYIM 231

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +Q+    G+      H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V  K+  
Sbjct: 232 QQVFIKAGVGGKVHPHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKH-- 289

Query: 308 DWMMEIYDQTHPSITQKDK 326
             +   Y +  P   +KD+
Sbjct: 290 --LQADYQKFFPRKDKKDE 306


>gi|303232676|ref|ZP_07319361.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae
           PB189-T1-4]
 gi|302481162|gb|EFL44237.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae
           PB189-T1-4]
          Length = 346

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 95/339 (28%), Positives = 154/339 (45%), Gaps = 40/339 (11%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L+K +Q ++ +L   R LS  TL++Y  D   ++ ++     + ++I      ++ ++R 
Sbjct: 21  LMKLKQEFMSHLSSTRNLSHNTLRAYSIDLDAYIAWVLARQYDALSI------THRQLRE 74

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++   ++    R++ R LS I+S+ K+   +  TT      + + K   +LPR LN   
Sbjct: 75  YLASLSSRGYATRTINRHLSAIRSWYKWFVWQGYTTSDAPAALASPKNPKTLPRVLNHHD 134

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
             TL      +   E+     R+   + +LY  G RISEA  LT  +I   ++ +R+ GK
Sbjct: 135 ITTLF-----NAFDESTPEGVRDRCFVEVLYATGCRISEAAQLTLGDIDMHEAQIRLFGK 189

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-------------------------NLNIQLP 228
           G K+RIVP+       + EY       L                                
Sbjct: 190 GSKMRIVPVYKECLDELSEYITKARPRLLAARTATSRRRAAGKSAAVPTRGTAATGASNR 249

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LF   RG P++    +           LP + + H++RH+FAT LLS G DLRS+Q +LG
Sbjct: 250 LFISTRGNPMSATALRYVFDSYIEKANLPATLSPHSMRHTFATDLLSGGADLRSVQELLG 309

Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
           H  LSTTQIYT+V+     D M     Q HP    + K+
Sbjct: 310 HSSLSTTQIYTHVS----IDAMKRAVKQAHPRAEAETKR 344


>gi|160915175|ref|ZP_02077388.1| hypothetical protein EUBDOL_01183 [Eubacterium dolichum DSM 3991]
 gi|158432974|gb|EDP11263.1| hypothetical protein EUBDOL_01183 [Eubacterium dolichum DSM 3991]
          Length = 302

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 82/316 (25%), Positives = 147/316 (46%), Gaps = 20/316 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +    + +LQ +      S+ T  +Y+ D ++F++++      +  I +   +    +  
Sbjct: 1   MEDLLERFLQYIMQVNSGSEHTKAAYQRDIQEFIMYI-----REQAIDSFEDVDRIVVMN 55

Query: 74  FISKRRTQK------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
           +I+  R +       + + ++ R LS ++SF  YL +      +  +  +  K +  +P 
Sbjct: 56  YIAFLRDKGGKGYSGMKNTTIARKLSSLRSFYHYLNEYIGIANNPFVYFKTPKIAKRIPE 115

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L   +    +++  L++         R+  +  L+Y CGLR+SEA+SL  +++    + 
Sbjct: 116 FLFYDEIEIFLESFDLNSMQ-----GLRDRTMFELMYACGLRVSEAVSLRTRDVDFADNI 170

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           L I GKGDK R+VP     ++ ++ Y          + +  LF   RGK L     Q  +
Sbjct: 171 LHIHGKGDKERLVPFYDLAKELLVSYIKDVRDVWATSDETALFVNQRGKKLTTRGVQYLM 230

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +      L +    H  RHSFATHLL NG DLR +Q +LGH  LSTTQIY +V+ +   
Sbjct: 231 NKAVEKCDLHVHVHPHMFRHSFATHLLDNGADLRYVQELLGHSSLSTTQIYVHVSKER-- 288

Query: 308 DWMMEIYDQTHPSITQ 323
             +   Y+  HP   +
Sbjct: 289 --LKAAYEHAHPRAKE 302


>gi|116328373|ref|YP_798093.1| site-specific recombinase XerD [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331099|ref|YP_800817.1| site-specific recombinase XerD [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116121117|gb|ABJ79160.1| Site-specific recombinase XerD [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116124788|gb|ABJ76059.1| Site-specific recombinase XerD [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 298

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 90/304 (29%), Positives = 145/304 (47%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            QN+ + L +E+GLS  ++ SY  D  +F  FL              ++   +I  F+++
Sbjct: 9   LQNFQEYLSVEKGLSDNSIYSYGYDLNKFKNFLEKEHI------DFLKVQANDIMRFLNE 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R +KI  +++ R +  I+ F K+LK  K    +    +   +   ++P  L + +   L
Sbjct: 63  ERDRKISSKTIAREVVAIRQFYKFLKDEKKLDTNPTEKIETPEVMRNIPDYLTQDEIEEL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                  +  E    + R+  I  LLY  GLRISEA +L   ++  +   L ++GKG + 
Sbjct: 123 F-----ASIREDNLYELRDKCIFELLYSSGLRISEACNLRLSDMDLEGMILTVEGKGGRQ 177

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP        +  Y     PF L       LF   +G  +N     R +    +   +
Sbjct: 178 RLVPFGEKSLDIMNRYLKQSRPFILKARNCEYLFVSKKGSYINRKSVWRLLNHYIKRTSI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               T HTLRHSFATHLL N  DL+S+Q +LGH  +STTQIYT++ +K     + E++ +
Sbjct: 238 SKKVTPHTLRHSFATHLLENHADLKSVQELLGHIDISTTQIYTHMANKT----LKEVHKK 293

Query: 317 THPS 320
            HP 
Sbjct: 294 FHPR 297


>gi|260593346|ref|ZP_05858804.1| integrase/recombinase XerD [Prevotella veroralis F0319]
 gi|260534622|gb|EEX17239.1| integrase/recombinase XerD [Prevotella veroralis F0319]
          Length = 314

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 93/310 (30%), Positives = 156/310 (50%), Gaps = 16/310 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            + + L++E+G S  TL +Y  D  + L +LA           + ++   ++  F +   
Sbjct: 13  RYRRYLKLEKGHSANTLDAYMRDLDKLLRYLAAENI------DVLKVKLEDLEFFAASIS 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              IG RSL R LSG++ F ++L             + + K+ N LP  L+  +   L  
Sbjct: 67  DLGIGPRSLARILSGVRQFYRFLVLDGYLEVDPTELLESPKQPNHLPEVLSTAEVDLLEQ 126

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            + L     +KW   RN AI+ +L+ CGLR+SE   LT  N+  ++  LR+ GKG K R+
Sbjct: 127 AIDL-----SKWEGHRNRAIIEVLFSCGLRVSELTHLTLSNLYIEEQYLRVLGKGSKERL 181

Query: 200 VPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+ P   + +  ++D     D+    +  +F   RG  L   +    I++     G+  
Sbjct: 182 VPISPRALEELSYWFDDRNKMDIKPGEEDYVFLNRRGHHLTRTMILIMIKRYAVEAGIKK 241

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++      ++E     H
Sbjct: 242 TISPHTLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDTTTLRQEILE----HH 297

Query: 319 PSITQKDKKN 328
           P   + D+++
Sbjct: 298 PRNIKYDEEH 307


>gi|302342643|ref|YP_003807172.1| tyrosine recombinase XerD [Desulfarculus baarsii DSM 2075]
 gi|301639256|gb|ADK84578.1| tyrosine recombinase XerD [Desulfarculus baarsii DSM 2075]
          Length = 311

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 89/302 (29%), Positives = 147/302 (48%), Gaps = 16/302 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L  ERGL++ TL +Y  D      FL         +Q   Q+    + A+++    
Sbjct: 23  YLDHLAGERGLARNTLAAYADDLADICGFL-----HDNGVQGWEQVDELHMVAYLAHAAK 77

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   S  R LS  +  + YL +R+  +   +  +R  KK+  LP  L++++ L L++ 
Sbjct: 78  EGLAANSRARRLSAARGLVGYLLRREKLSADPLATLRGPKKTAGLPHFLSQEEMLRLLE- 136

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
               T      +  R+ A+L  +YG GLR+SE + L    I      L ++GKG K R+V
Sbjct: 137 ----TPAADSDLGRRDRAMLEAMYGAGLRVSEVIDLGVGQIQFQIGCLLVRGKGAKERLV 192

Query: 201 PLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           PL     + + +Y      +L         +F   RG  L+     + + +     G+  
Sbjct: 193 PLHQVAIQRLEDYLRGPRQNLLRGQKASDTVFLNARGGKLSRMGVWKILAKHVAAAGIDH 252

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HTLRH+FATHLL  G DLRS+Q +LGH  + TTQIYT++  K     +++++ Q H
Sbjct: 253 HVSPHTLRHTFATHLLEGGADLRSVQLMLGHADIGTTQIYTHLGMKR----LVDVHRQCH 308

Query: 319 PS 320
           P 
Sbjct: 309 PR 310


>gi|242279423|ref|YP_002991552.1| tyrosine recombinase XerD [Desulfovibrio salexigens DSM 2638]
 gi|242122317|gb|ACS80013.1| tyrosine recombinase XerD [Desulfovibrio salexigens DSM 2638]
          Length = 304

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 144/305 (47%), Gaps = 16/305 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +    +L+ L IERGLS+ +L  Y  D   F  FL   + +      I   +   +  ++
Sbjct: 13  QWIDRYLEYLLIERGLSENSLSGYLSDLESFQSFLEDRSAK------IEDATSQTLLLYL 66

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +  R++ +   SL R LS ++ F  +   R    E     + N K    +P  L+ ++  
Sbjct: 67  TYLRSKALKSTSLARHLSSLRGFFAFCTSRGFIKEDPATLLENPKLPRKIPEFLSPEEIG 126

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            +     L     T+ +  R+  +L LLY  G+R+SE ++L  ++       L I GKG 
Sbjct: 127 RM-----LALPKLTEKLGFRDRTMLELLYAAGMRVSELINLNIEDFDPQTGVLIIFGKGS 181

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R+VP+    +  + +Y        N  ++  +F    GK L      + I++     G
Sbjct: 182 KERLVPIHYVAQNFLNQYIKDWRPAFNPKVKN-IFLNRSGKGLTRQGVWKLIKKFALEAG 240

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  S + HT RHSFATHLL  G DLR++Q +LGH  ++ T+IYT++        +++++ 
Sbjct: 241 IKRSISPHTFRHSFATHLLDGGADLRTVQLLLGHSDINATEIYTHI----QAGRLVQLHK 296

Query: 316 QTHPS 320
           + HP 
Sbjct: 297 RFHPR 301


>gi|295696106|ref|YP_003589344.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295411708|gb|ADG06200.1| integrase family protein [Bacillus tusciae DSM 2912]
          Length = 304

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 84/310 (27%), Positives = 144/310 (46%), Gaps = 19/310 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + +   LE ER LS  T+++Y  D  Q L ++     +   I     L+   IR F+
Sbjct: 10  RAVEAFRVYLESERRLSPRTVRAYMGDVGQLLEWM-----QDQGIGGWDLLTPVRIRDFL 64

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++   + +  RS+ R LS  ++  ++  +     ES +  +   K+   +P  ++ ++  
Sbjct: 65  AELWDRGLSRRSVARMLSAYRTLYRFFLREDEVRESPLEPVATPKQEKRIPNFMDLEEVF 124

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
                 LL +      +  R+ A+L  LY  G+R+ EA++L   ++        I GKG 
Sbjct: 125 -----HLLASPDPNTALGQRDRALLEWLYATGVRVGEAVALRVGDVDMAGRRALIHGKGG 179

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLN---LNIQLPLFRGIRGKPLNPGVFQRYI-RQLR 251
           K R V    S  +A+  Y ++    L         P+F   RG  L+    +R + R + 
Sbjct: 180 KERYVLFGRSAARALTRYLEVGWPALAGACPGPGDPVFLNYRGGALSDRSVRRIVDRHMA 239

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R  G     + H LRH+FATHLL  G DLR++Q +LGH  L +TQIYT+   +     ++
Sbjct: 240 RVAGYHK-ISPHVLRHTFATHLLDAGADLRAVQELLGHASLRSTQIYTHTTRER----LL 294

Query: 312 EIYDQTHPSI 321
           ++Y   HP  
Sbjct: 295 QVYLHAHPRA 304


>gi|68249255|ref|YP_248367.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           86-028NP]
 gi|319775473|ref|YP_004137961.1| site-specific tyrosine recombinase [Haemophilus influenzae F3047]
 gi|81336341|sp|Q4QMP0|XERC_HAEI8 RecName: Full=Tyrosine recombinase xerC
 gi|68057454|gb|AAX87707.1| site-specific recombinase XerC [Haemophilus influenzae 86-028NP]
 gi|317450064|emb|CBY86278.1| site-specific tyrosine recombinase [Haemophilus influenzae F3047]
          Length = 295

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 92/312 (29%), Positives = 152/312 (48%), Gaps = 17/312 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +L     +   L IER +S  T+ +Y+      +  LA     +  I +  Q++ + +R 
Sbjct: 1   MLTALNRYWDYLRIERQMSPHTITNYQHQLDATIKILA-----QQDIHSWTQVTPSVVRF 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            +++ + Q + ++SL   LS ++ FL +L ++     +    +   K+   LP+ ++ +Q
Sbjct: 56  ILAESKKQGLKEKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGWHLPKNMDGEQ 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+       +   + ID R+ AIL L+Y  GLR+SE   L   +I      +R+ GK
Sbjct: 116 IQQLL------ANDSKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R+VP       AI E+  +    L       LF    G  ++    Q+ +      
Sbjct: 170 GNKERVVPFGRYASHAIQEWLKVR--ALFNPKDEALFVSQLGNRISHRAIQKRLETWGIR 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL      H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    + E+
Sbjct: 228 QGLNSHLNPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEV 283

Query: 314 YDQTHPSITQKD 325
           YDQ HP   +K 
Sbjct: 284 YDQAHPRAKRKK 295


>gi|284006600|emb|CBA71861.1| phage integrase [Arsenophonus nasoniae]
          Length = 297

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 86/313 (27%), Positives = 156/313 (49%), Gaps = 18/313 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++  ++L+ L +ER LS +TL +Y+      +          + I    QL  + +R 
Sbjct: 1   MQQQIDDFLRYLRVERQLSPVTLINYQRQLAVLVDMAI-----DMDINDWAQLETSHVRM 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            ++K R Q +   SL   LS ++SFL +L  + + T +    +R  K    LP+ ++  +
Sbjct: 56  MVAKCRRQGLQAASLALRLSSLRSFLDWLVGQGLITANPAKTIRAPKNKRHLPKNIDVDE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++  L         +  R+  +L ++YG GLR+SE ++L  Q++      +R+ GK
Sbjct: 116 VNQLLNIDLA------DPLSVRDRTMLEVMYGAGLRLSELINLNCQHLDLQSGEVRVMGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRR 252
           G K R VPL     + ++ + ++       +    +F    RGK ++    Q+       
Sbjct: 170 GSKERKVPLGRIAVEWLIRWLEMRQQYAKQDE--AVFISIQRGKRISARNVQKRFALWGI 227

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+      H LRHSFATH+L + GDLR++Q +LGH  LSTTQ+YT+++ ++    + +
Sbjct: 228 RQGVRSHIHPHKLRHSFATHILESSGDLRAVQELLGHANLSTTQVYTHLDFQH----LAK 283

Query: 313 IYDQTHPSITQKD 325
           +YD  HP   ++ 
Sbjct: 284 VYDVAHPRAKREK 296


>gi|157374032|ref|YP_001472632.1| tyrosine recombinase XerD [Shewanella sediminis HAW-EB3]
 gi|157316406|gb|ABV35504.1| tyrosine recombinase XerD [Shewanella sediminis HAW-EB3]
          Length = 304

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 91/304 (29%), Positives = 143/304 (47%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L +L   RGLS  TL +Y  D   F   +    ++      + ++S   IR ++  
Sbjct: 15  IELFLDDLWSSRGLSDNTLSAYRTDLNHFDRHIQRSGQQ------LTEVSQEGIRGYLDI 68

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  Q     S  R +S ++ F  +L   K    +    +++ K +  LP +L+E     L
Sbjct: 69  RFEQGFARTSSARLVSSLRRFYGFLVICKKIEINPTAQIKSPKIARKLPGSLSEFDVDRL 128

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +             I+ R+ A+L LLY  GLR++E +SLT + +   Q  +R+ GKG K 
Sbjct: 129 LSE-----PDVEDSIECRDKAMLELLYATGLRVTELVSLTMEQLSLRQGLVRVIGKGGKE 183

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+       I  Y      +L        LF   RG  +    F   I+      G+
Sbjct: 184 RLVPMGELAVDNIEYYLQGARAELLKQKQSDVLFPSKRGVMMTRQTFWHRIKLYALRSGV 243

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + +++ +
Sbjct: 244 STELSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKAR----LSQLHSE 299

Query: 317 THPS 320
            HP 
Sbjct: 300 HHPR 303


>gi|183602476|ref|ZP_02963842.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|241191170|ref|YP_002968564.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241196576|ref|YP_002970131.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183218395|gb|EDT89040.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|240249562|gb|ACS46502.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|240251130|gb|ACS48069.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|289177279|gb|ADC84525.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium animalis
           subsp. lactis BB-12]
 gi|295794163|gb|ADG33698.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis V9]
          Length = 311

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 87/315 (27%), Positives = 142/315 (45%), Gaps = 23/315 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +++ L   RGLS+ T  +Y  D  Q L  L     +         ++  ++R ++  R
Sbjct: 8   ERFIEYLRSNRGLSEHTCMAYRGDILQCLEAL-----DAFGRGNPDDVTLDDLRMWMG-R 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +G  SL R    ++SF  +  +  +   +    +R  K   +LP  LNE QA  L+
Sbjct: 62  MAHTVGKTSLARKTIAVRSFFTWAYEHGMLAHNPAHALRTPKIDRNLPAVLNEDQAERLM 121

Query: 139 DNVLLHTSHET-----------KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           D V      +                 R+ A+L LLY  G+R+ E + L   +      T
Sbjct: 122 DTVDAEAGEKNAGKSKDDALNAHAKALRDCAMLELLYATGMRVGELVGLDMGSFDWSNRT 181

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           +R+ GKG+K R++P     ++A+  +     P   N N    +F G+RG  ++  V ++ 
Sbjct: 182 VRVLGKGNKTRVIPFGAPAQQAVEHWLHGGRPVFANGNSGNAVFIGVRGCRIDQRVVRQV 241

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           + +     G+P   + H LRHS ATH+L  G DLR +Q +LGH  L TTQ Y +V+ +  
Sbjct: 242 VHEQAEQAGVP-DISPHALRHSAATHMLDGGADLREVQEMLGHSSLQTTQRYAHVSIEQL 300

Query: 307 GDWMMEIYDQTHPSI 321
            D     Y Q  P  
Sbjct: 301 KDR----YRQAFPRA 311


>gi|239906838|ref|YP_002953579.1| tyrosine recombinase XerD [Desulfovibrio magneticus RS-1]
 gi|239796704|dbj|BAH75693.1| tyrosine recombinase XerD [Desulfovibrio magneticus RS-1]
          Length = 285

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 83/298 (27%), Positives = 134/298 (44%), Gaps = 16/298 (5%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RGLS+ ++ +Y  D   FLIFL  +         +   +   +  ++   R++ +  RSL
Sbjct: 3   RGLSEHSIAAYSTDIVGFLIFLNDHG------AALEATTDETVLLYLMHLRSRGLASRSL 56

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R LS ++ F  +       + S    + N K    LP  L+ ++   L+D         
Sbjct: 57  ARHLSALRGFFAFAADESWLSASPAALIENPKLPRLLPDVLSREEVTRLLD-----APDT 111

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
              +  R+  +L LLY  GLR+SE + LT  +       LR+ GKG K R+ P+     +
Sbjct: 112 ATPLGYRDRTMLELLYAAGLRVSELVGLTLADFDAQAGLLRVFGKGSKERVTPIHSLAME 171

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            +  Y            Q  +F    GK L      + I++      +    + H+LRHS
Sbjct: 172 FLSTYLSSIRGAFGPKDQH-VFLNRSGKGLTRQAVWKGIKRYALAAQVSTRISPHSLRHS 230

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
           FATHLL  G DLR++Q +LGH  +S T+IYT+V        ++ ++   HP    +DK
Sbjct: 231 FATHLLDGGADLRTVQMLLGHADISATEIYTHV----QAGRLLAVHRAHHPRSRDRDK 284


>gi|227536514|ref|ZP_03966563.1| integrase/recombinase XerD [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227243591|gb|EEI93606.1| integrase/recombinase XerD [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 297

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 90/304 (29%), Positives = 161/304 (52%), Gaps = 17/304 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++ + L++ERGL+  ++++Y  D  +  ++            T++QLS   I+ F+   
Sbjct: 8   KDFKRYLQLERGLTSNSIEAYLNDIAKLEVYCTDQQ------LTLKQLSVHNIQEFLVWI 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            T  I   S  R +SG+K+F  YL+   + T++ +  +++ + S  +P  LN ++   L+
Sbjct: 62  NTFDISPYSQSRLISGLKAFFGYLQLEGLITKNPVELIQSPRLSRKIPVVLNIEEIDQLI 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             + L T+        RN AIL +LYGCGLR+SE ++L   N+      ++++GKG+K R
Sbjct: 122 GALDLSTAD-----GMRNKAILEILYGCGLRVSELVNLRISNLFLHIDFIKVEGKGNKER 176

Query: 199 IVPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           ++P+     K +  Y +       +    +  +F   RG  L+  +    I+ L    GL
Sbjct: 177 LIPIGQHAIKYLNIYLNEIRVHQPVKAGFEDYVFLNKRGTSLSRVMIFLIIKDLAAKTGL 236

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HT RHSFA+HL+  G DLR++Q +LGH  ++TT+IYT+++     D++  I  Q
Sbjct: 237 QKEISPHTFRHSFASHLVEGGADLRAVQDMLGHESITTTEIYTHID----RDYLHAIITQ 292

Query: 317 THPS 320
            HP 
Sbjct: 293 FHPR 296


>gi|206558906|ref|YP_002229666.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia
           J2315]
 gi|198034943|emb|CAR50815.1| tyrosine recombinase XerC [Burkholderia cenocepacia J2315]
          Length = 306

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 87/321 (27%), Positives = 161/321 (50%), Gaps = 29/321 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                +L NL+  R LS+ TL++Y  +  +     A         + +  L+  ++R  +
Sbjct: 4   DPIAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAG--------RPLDALTAADMRGAV 55

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++     +  RS+   LS  ++F ++L +R     + +  +R  K+  +LP+AL+   A 
Sbjct: 56  ARAHAGGLSARSISHRLSAWRAFYRWLAQRIEMPANPVAAVRAPKRPKTLPKALSVDDAS 115

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP-----------QNIMDD 184
            L+D  L  T+        R+ AIL L Y  GLR++E + L               +   
Sbjct: 116 ALMDAPLAGTTE-----GIRDHAILELFYSSGLRLAELIGLDVTYTQADGYRSAGWLDLA 170

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           ++ + ++GKG+K R VP+      A+  +  +    +  +   PLF  +RG  ++PGV +
Sbjct: 171 EAEVTVRGKGNKERKVPVGRKAIDALNAWLAVRGEFVKHDPH-PLFVSVRGNRMSPGVVR 229

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  ++ TQ+YT+++ +
Sbjct: 230 ERVKRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYTSLDFQ 289

Query: 305 NGGDWMMEIYDQTHPSITQKD 325
           +    + +IYD  HP   ++D
Sbjct: 290 H----LAKIYDSAHPRAKKRD 306


>gi|15601958|ref|NP_245030.1| site-specific tyrosine recombinase XerD [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|31563286|sp|Q9CPF0|XERD_PASMU RecName: Full=Tyrosine recombinase xerD
 gi|12720303|gb|AAK02177.1| XerD [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 297

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 154/305 (50%), Gaps = 17/305 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + IE+ LS+ T+ SY  D    + +L       I +  I      +++ F+ +
Sbjct: 7   IELFLNEIWIEKQLSQNTIASYRLDLTALIQWLEKQQLTLINLDAI------DLQTFLGE 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  Q     S  R LS ++   +YL + K  T+     + + K  + LP+ L E+Q   L
Sbjct: 61  RLNQGYKATSTARLLSAMRKLFQYLYREKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +     ++      ++ R+ A++ LLY  GLR++E +SLT +NI  +Q  +R+ GKG+K 
Sbjct: 121 L-----NSPDVDIPLELRDKAMMELLYATGLRVTELVSLTIENININQGIVRVVGKGNKE 175

Query: 198 RIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVP+       I ++     PF L+      +F   R   +    F   I+       +
Sbjct: 176 RIVPIGEEATYWIRQFMLYGRPFLLHGQSSDVVFPSKRALQMTRQTFWHRIKHYALLSDI 235

Query: 257 PLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            ++  + H LRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V  +     +  +++
Sbjct: 236 DINSLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER----LKHLHE 291

Query: 316 QTHPS 320
           + HP 
Sbjct: 292 RYHPR 296


>gi|161526251|ref|YP_001581263.1| site-specific tyrosine recombinase XerC [Burkholderia multivorans
           ATCC 17616]
 gi|189349035|ref|YP_001944663.1| site-specific tyrosine recombinase XerC [Burkholderia multivorans
           ATCC 17616]
 gi|160343680|gb|ABX16766.1| tyrosine recombinase XerC [Burkholderia multivorans ATCC 17616]
 gi|189333057|dbj|BAG42127.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
          Length = 306

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 89/321 (27%), Positives = 158/321 (49%), Gaps = 29/321 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                +L NL+  R LS+ TL++Y  +  +     A         + +  L   +IR  +
Sbjct: 4   DPIAAYLSNLKYVRQLSEHTLRAYTHELDELKKLAAG--------RPLDTLVAADIRGAV 55

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++     +  RS+   LS  ++F ++L +R     + +  +R  K+  +LP+AL+   A 
Sbjct: 56  ARAHAGGLSARSISHRLSAWRAFYRWLAQRVEMPANPVAAVRAPKRPKTLPKALSVDDAS 115

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-----------MDD 184
            L+D  L  T+        R+ AIL L Y  GLR++E + L                   
Sbjct: 116 ALMDAPLADTTE-----GIRDHAILELFYSSGLRLAELIGLDVAYTQTGDYRSAGWLDLA 170

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           ++ + ++GKG+K R VP+      A+  +  +    +  +   PLF  +RG  ++PGV +
Sbjct: 171 EAEVTVRGKGNKERKVPVGRKAIDALNAWLAVRGEFVKHDPH-PLFLSVRGNRMSPGVVR 229

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +++     G+P     H LRHSFATH+L + GDLR++Q +LGH  +S TQ+YT+++ +
Sbjct: 230 ERVKRAALAAGIPAHVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYTSLDFQ 289

Query: 305 NGGDWMMEIYDQTHPSITQKD 325
           +    + +IYD  HP   ++D
Sbjct: 290 H----LAKIYDSAHPRAKKRD 306


>gi|134101746|ref|YP_001107407.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
 gi|291003082|ref|ZP_06561055.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
 gi|133914369|emb|CAM04482.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
          Length = 313

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 84/321 (26%), Positives = 141/321 (43%), Gaps = 21/321 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +  EL      +L +L +ERG ++ TL SY  D R++   L      +  ++ + ++  T
Sbjct: 7   LPPELSSVFSGYLNHLAVERGTARSTLDSYARDLRRYADHLL-----ESGVRALGEVRST 61

Query: 70  EIRAFISKRRTQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            + AF+++ R        +   S  R+L   +   ++     I        +        
Sbjct: 62  HLSAFLAELREGGPERPALAQSSAARALIAARGLHRFAHADGIVEVDVAREISPPSPPKR 121

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP+AL     L L+DN     +        R+ A+L LLY  G RISEA+ L   ++ + 
Sbjct: 122 LPKALPVSDVLRLLDN-----TGGEDVRGLRDRALLELLYSSGARISEAVGLDVDDVDEA 176

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGV 242
           + T+ + GKG + R+VP+      A+  Y       L         +F   RG  L+   
Sbjct: 177 ERTILLDGKGGRQRLVPVGRPALAALGAYMVRARPVLAGRGRGSSAVFLNSRGTRLSRQS 236

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               ++      G+    + H LRHSFATHLL  G D+R +Q +LGH  ++TTQ+YT + 
Sbjct: 237 AWNALKSAAERAGIGSGVSPHVLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLIT 296

Query: 303 SKNGGDWMMEIYDQTHPSITQ 323
                + + E++   HP    
Sbjct: 297 ----VNTLREVHATAHPRARH 313


>gi|169634632|ref|YP_001708368.1| site-specific tyrosine recombinase [Acinetobacter baumannii SDF]
 gi|169153424|emb|CAP02561.1| site-specific tyrosine recombinase [Acinetobacter baumannii]
          Length = 306

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 92/320 (28%), Positives = 147/320 (45%), Gaps = 19/320 (5%)

Query: 2   EGNNLPEIVS-FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           +   +P  V   E L   Q +   L  +  +S  T  +Y  D  Q             T 
Sbjct: 4   KKPRIPSPVQIPEHLSFLQGFRDYLVAQ-TVSPHTRNAYLSDLIQCSEIHKKNRLPDWTS 62

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             I  +        + +        RS+ R LS ++ F K L+++K+ +++ +    + K
Sbjct: 63  DDISDV--------LIELTKVGKSPRSIARCLSALRQFYKSLREQKLRSDNPVATHHSPK 114

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
              +LP+ L+E+    L+          T  +  R+ A+  +LY CGLR+SE L+L  + 
Sbjct: 115 IGRALPKDLSEEDVEALI-----QAPDITTALGLRDRAMFEVLYACGLRVSELLNLRLEL 169

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I   Q  LRI GKG+K R+VPL       +  Y +     L  +    LF    G  ++ 
Sbjct: 170 INLKQGYLRITGKGNKERLVPLGQYACDWVERYLNEARPQLYKSSTDYLFLTQHGGIMSR 229

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             F   I++      +    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+
Sbjct: 230 QNFWYAIKRYALQANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTH 289

Query: 301 VNSKNGGDWMMEIYDQTHPS 320
           V        M +++++ HP 
Sbjct: 290 VAQVR----MQQLHEKHHPR 305


>gi|184156584|ref|YP_001844923.1| site-specific recombinase XerD [Acinetobacter baumannii ACICU]
 gi|183208178|gb|ACC55576.1| Site-specific recombinase XerD [Acinetobacter baumannii ACICU]
 gi|322506471|gb|ADX01925.1| xerD [Acinetobacter baumannii 1656-2]
          Length = 306

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 92/320 (28%), Positives = 147/320 (45%), Gaps = 19/320 (5%)

Query: 2   EGNNLPEIVS-FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           +   +P  V   E L   Q +   L  +  +S  T  +Y  D  Q             T 
Sbjct: 4   KKPRIPSPVQIPEHLSFLQGFRDYLVAQ-TVSPHTRNAYLSDLIQCSELHKKNRLPDWTS 62

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             I  +        + +        RS+ R LS ++ F K+L+++K+ +++ +    + K
Sbjct: 63  DDISDV--------LIELTKVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPK 114

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
              +LP+ L E+    L+          T  +  R+ A+  +LY CGLR+SE L+L  + 
Sbjct: 115 IGRALPKDLCEEDVEALI-----QAPDITTALGLRDRAMFEVLYACGLRVSELLNLRLEL 169

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I   Q  LRI GKG+K R+VPL       +  Y +     L  +    LF    G  ++ 
Sbjct: 170 INLKQGYLRITGKGNKERLVPLGQYACDWVERYLNEARPQLYKSSTDYLFLTQHGGIMSR 229

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             F   I++      +    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+
Sbjct: 230 QNFWYAIKRYALQANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTH 289

Query: 301 VNSKNGGDWMMEIYDQTHPS 320
           V        M +++++ HP 
Sbjct: 290 VAQVR----MQQLHEKHHPR 305


>gi|313901171|ref|ZP_07834659.1| tyrosine recombinase XerC [Clostridium sp. HGF2]
 gi|312954129|gb|EFR35809.1| tyrosine recombinase XerC [Clostridium sp. HGF2]
          Length = 302

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 19/310 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +LQ ++     S  T  +Y+ D R+F+ FL     ++  I+ ++      +  +I+  R
Sbjct: 7   RFLQYMDSLNSGSVHTRAAYQRDIREFISFL-----QEEGIEELQDADRIIVMNYIASLR 61

Query: 80  TQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
            +     ++ + ++ R LS ++SF +YL +    T++  L  +  K++  +P  L   + 
Sbjct: 62  EKPGVSGEMKNSTIARKLSSLRSFYRYLNEYVGITQNPFLYFKTPKRAKRIPEFLFYDEM 121

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
            T + +  L T         R+ A+  L+Y CGLR+SEA SL   +I      L I GKG
Sbjct: 122 DTFLSSFDLDTPD-----GLRDRAMFELMYACGLRVSEAASLRLYDIDLHDRILTIHGKG 176

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +K RIVP      + +  Y               +F   RGK L     Q  ++      
Sbjct: 177 NKQRIVPFYALAGELLEHYLQEVRPQWMKEEHDIVFINQRGKGLTTRGIQYRMQLAADTC 236

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            L +    H  RHSFATHLL NG DLR +Q +LGH  LSTTQ+Y +V  +     + + Y
Sbjct: 237 SLSVHVHPHMFRHSFATHLLDNGADLRVVQELLGHASLSTTQVYVHVTQER----LKKAY 292

Query: 315 DQTHPSITQK 324
              HP   +K
Sbjct: 293 THAHPRAQEK 302


>gi|332665189|ref|YP_004447977.1| Tyrosine recombinase xerC [Haliscomenobacter hydrossis DSM 1100]
 gi|332334003|gb|AEE51104.1| Tyrosine recombinase xerC [Haliscomenobacter hydrossis DSM 1100]
          Length = 330

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 89/312 (28%), Positives = 146/312 (46%), Gaps = 16/312 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +   L +ER L+  T+++Y  D  +   +L    E  +    +R     ++  F
Sbjct: 31  LPWIRGFEAYLLLERSLAGNTIEAYTRDIGKLAEYLG-MQERNLGPADVR---AEDLTTF 86

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++      +   S  R LS +K+F KYL   +   +     +   +   S+P  L+    
Sbjct: 87  LAWLNELGLSAPSQARLLSALKTFYKYLLLEEGIKDDPTALLEGPRLQRSIPSVLSYDDI 146

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             ++  + L T+        RN AIL +LY CGLR+SE   L   N+  D   LRI GKG
Sbjct: 147 QAMLVTIDLSTAQ-----GQRNRAILEILYACGLRVSELCDLRLSNLFLDVEFLRIIGKG 201

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           +K RIVP+     K +  Y +     L       +  +F   RG  L+  +    +++  
Sbjct: 202 NKERIVPIGADAIKHLNFYLEGARKQLPQVKKGHENYVFLNRRGARLSRVMVFLIVKEAA 261

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+    + HT RHSFATHLL  G DL++IQ +LGH  + TT+IYT++++    D++ 
Sbjct: 262 TQAGIEQIVSPHTFRHSFATHLLEGGADLKAIQDMLGHESILTTEIYTHLDT----DYLR 317

Query: 312 EIYDQTHPSITQ 323
           E   + HP   +
Sbjct: 318 ETILRFHPRNRR 329


>gi|300775316|ref|ZP_07085178.1| tyrosine recombinase XerD [Chryseobacterium gleum ATCC 35910]
 gi|300506056|gb|EFK37192.1| tyrosine recombinase XerD [Chryseobacterium gleum ATCC 35910]
          Length = 304

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 90/307 (29%), Positives = 151/307 (49%), Gaps = 15/307 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           ++ +++   L  ER  S+ TL +Y  D ++    L  Y EE +       ++Y  ++ +I
Sbjct: 5   EKIKDFEIFLRFERNFSENTLDAYVRDIKK----LKDYAEEDLENVGPDSIAYENLQEYI 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                QK  +RS  R +S IK+F K+L + +   ++    +   K    LP  L+     
Sbjct: 61  FNLSKQKFSERSQARWISSIKAFFKFLLEDEYREDNPAALLEGPKLGLYLPDTLSLPDIN 120

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            ++  + ++T      +  RN  I+ +LYGCGLR+SE + L   NI   +  +++ GKG+
Sbjct: 121 KIIAAIEVNTD-----LGKRNQCIIEVLYGCGLRVSELIDLKISNINFKEQYIKVHGKGN 175

Query: 196 KIRIVPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R VPL       +  Y         +N   +  LF   RG  ++  +    I++L   
Sbjct: 176 KTRFVPLADYTADLLDSYIKEVRSKGKINKKYEDTLFLNSRGTSMSRVIVFLIIKELTDK 235

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    + HT RHSFATHLL NG DLR IQ +LGH  ++TT+IYT++ ++     + ++
Sbjct: 236 AGVNKKISPHTFRHSFATHLLQNGADLRYIQEMLGHSSITTTEIYTHLKTEE----LRDV 291

Query: 314 YDQTHPS 320
               HP 
Sbjct: 292 ILSYHPR 298


>gi|24215183|ref|NP_712664.1| integrase/recombinase XerD [Leptospira interrogans serovar Lai str.
           56601]
 gi|45657354|ref|YP_001440.1| putative integrase/recombinase protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|34222802|sp|Q7ZAM7|XERD_LEPIN RecName: Full=Tyrosine recombinase xerD
 gi|73920480|sp|Q72SA5|XERD_LEPIC RecName: Full=Tyrosine recombinase xerD
 gi|24196257|gb|AAN49682.1| integrase/recombinase XerD [Leptospira interrogans serovar Lai str.
           56601]
 gi|45600593|gb|AAS70077.1| putative integrase/recombinase protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 298

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 90/304 (29%), Positives = 146/304 (48%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            QN+ + L +E+GLS  ++ SY  D  +F  FL              ++   +I  F+++
Sbjct: 9   LQNFQEYLSVEKGLSDNSIYSYGYDLNKFKNFLEKEHI------DFLKVQADDIMRFLNE 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            + +KI  +++ R +  I+ F K+LK  K    +    +   +   S+P  L + +   L
Sbjct: 63  EKDRKISSKTIAREVVAIRQFYKFLKDEKKLDTNPTEKIETPEVMRSIPDYLTQDEIEEL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                  +  E    + R+  I  LLY  GLRISEA +L   ++  +  TL ++GKG + 
Sbjct: 123 F-----ASIKEDNLYELRDKCIFELLYSSGLRISEACNLRLNDMDLEGMTLTVEGKGGRQ 177

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP        +  Y     PF L       LF   +G  +N     R +    +   +
Sbjct: 178 RLVPFGEKSLDILNRYLKQSRPFILKSRNCEYLFVSKKGSYINRKSVWRLLNHYIKRTSI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               T HTLRHSFATHLL N  DL+S+Q +LGH  ++TTQIYT++ +K     + E++ +
Sbjct: 238 LKKVTPHTLRHSFATHLLENHADLKSVQELLGHIDIATTQIYTHMANKT----LREVHKK 293

Query: 317 THPS 320
            HP 
Sbjct: 294 FHPR 297


>gi|229845511|ref|ZP_04465639.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           6P18H1]
 gi|229811527|gb|EEP47228.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           6P18H1]
          Length = 295

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 93/312 (29%), Positives = 152/312 (48%), Gaps = 17/312 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +L     +   L IER +S  T+ +Y+      +  LA     +  I    Q++ + +R 
Sbjct: 1   MLTALNRYWDYLRIERQMSPHTITNYQHQLDAIIKILA-----QQDIHAWTQVTPSVVRF 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            +++ + Q + ++SL   LS ++ FL +L ++     +    +   K+   LP+ ++ +Q
Sbjct: 56  ILAESKKQGLKEKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQ 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+       +   + ID R+ AIL L+Y  GLR+SE   L   +I      +R+ GK
Sbjct: 116 VQQLL------ANDSKEPIDIRDRAILELMYSSGLRLSELHGLDLNSINTRVREVRVIGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R+VP       AI E+  +    L       LF    G  ++    Q+ +      
Sbjct: 170 GNKERVVPFGRYASHAIQEWLKVR--ALFNPKDEALFVSQLGNRISHRAIQKRLETWGIR 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL      H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    + E+
Sbjct: 228 QGLNSHLNPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEM 283

Query: 314 YDQTHPSITQKD 325
           YDQTHP   +K 
Sbjct: 284 YDQTHPRAKRKK 295


>gi|253997561|ref|YP_003049625.1| tyrosine recombinase XerC [Methylotenera mobilis JLW8]
 gi|253984240|gb|ACT49098.1| tyrosine recombinase XerC [Methylotenera mobilis JLW8]
          Length = 293

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 93/311 (29%), Positives = 158/311 (50%), Gaps = 19/311 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +     ++Q+L  ERGLS+LT  +Y  D            E       ++ +S+ +IR F
Sbjct: 1   MLHLDAYIQHLTFERGLSQLTCINYRRDISLL--------ESLAEAADLQTISHAQIRRF 52

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I K   +++  +S+ R+LS  + F  YL      T++ +  +R  K + +LP+AL+  QA
Sbjct: 53  IGKLHARELSSKSIARALSAWRGFYDYLIHHHGYTQNPVHGLRAPKAAKTLPQALSVDQA 112

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           +  VD     T      +D R+ AIL L Y  GLR++E ++L    +     T+ + GKG
Sbjct: 113 VNFVDIQGGGT------LDLRDHAILELFYSSGLRLAELVNLDIDRLDFTDGTVEVIGKG 166

Query: 195 DKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K RIVPL     +A+ ++             +  +F   +GK + P   Q  ++     
Sbjct: 167 NKTRIVPLGSHAAEAMQKWLQARALIPTAETNKQAVFITQQGKRITPRAVQYRVKAWAIK 226

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G   +   H LRHSFA+H+L +  DLR++Q +LGH  +STTQ+YT+++ ++    + ++
Sbjct: 227 QGADSNLHPHMLRHSFASHVLQSSQDLRAVQEMLGHANISTTQVYTHLDFQH----LAKV 282

Query: 314 YDQTHPSITQK 324
           YD  HP   +K
Sbjct: 283 YDNAHPRAKKK 293


>gi|304382767|ref|ZP_07365251.1| tyrosine recombinase XerD [Prevotella marshii DSM 16973]
 gi|304336086|gb|EFM02332.1| tyrosine recombinase XerD [Prevotella marshii DSM 16973]
          Length = 315

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 91/311 (29%), Positives = 158/311 (50%), Gaps = 16/311 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+ L+++R  S  TL++Y  D  + L++L           T  ++    ++ F ++
Sbjct: 12  VKAYLRYLKLQRNYSGNTLEAYRRDLNRLLVYLKQEG------LTPTEVKLEHLQHFSAQ 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                IG RS  R LSG++SF ++L+            + + +    LP  L+ ++   L
Sbjct: 66  LYDCGIGARSQARVLSGVRSFYRFLQLDGYMESDPSELLESPQIGTHLPEVLSTEEVDRL 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            +++ L     +K    RN AI+ +L+ CGLR++E +SL   N+  D+  +R+ GKG K 
Sbjct: 126 ENSLDL-----SKPEGQRNRAIIEVLFSCGLRVTELVSLRLSNLYLDEGFIRVLGKGRKE 180

Query: 198 RIVPLLPSVRKAI-LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R VP+ P   K + L +YD     +    +  +F   RG  L   +    I++     G+
Sbjct: 181 RFVPISPRAIKELKLWFYDRNELKIRAGEEDYVFLNRRGVHLTRTMILIMIKRQATEAGI 240

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HTLRHSFAT LL  G DLR+IQ +LGH  +STT+IYT++++      ++E    
Sbjct: 241 QKTISPHTLRHSFATALLEGGADLRAIQVMLGHESISTTEIYTHIDTTTLRREILE---- 296

Query: 317 THPSITQKDKK 327
            HP     +++
Sbjct: 297 HHPRNIHYEEE 307


>gi|218131523|ref|ZP_03460327.1| hypothetical protein BACEGG_03142 [Bacteroides eggerthii DSM 20697]
 gi|217986455|gb|EEC52792.1| hypothetical protein BACEGG_03142 [Bacteroides eggerthii DSM 20697]
          Length = 316

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 85/311 (27%), Positives = 145/311 (46%), Gaps = 16/311 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + Q L++E+ L+  T  +Y  D ++ L FL     E      +  ++  +++ F + 
Sbjct: 17  IRKYQQYLKLEKSLASNTFDAYMTDLQKLLHFLEGENIE------VGNVTPDDLQRFAAG 70

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I  RS  R LSGIKSF  +L             +   K    +P  L  ++   +
Sbjct: 71  LHDIGIHPRSQARILSGIKSFFHFLTVADYLETDPSELLEGPKIGFKIPEVLTVEEIDRI 130

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +           K    RN AIL  LY CGLR+SE  +L   ++  ++  ++++GKG K 
Sbjct: 131 I-----SAVDMDKKEGQRNRAILETLYSCGLRVSELCNLKLSDLYFEEGFIKVEGKGSKQ 185

Query: 198 RIVPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+ P   K I  +        +    +  +F    G  ++  +    I++L    G+
Sbjct: 186 RLVPISPRAIKEIKYWLTDRNLGKIKKGYEDYVFLARWGNNISRIMVFHMIKELAEKTGI 245

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++       ++E    
Sbjct: 246 TKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIE---- 301

Query: 317 THPSITQKDKK 327
            HP   +  K+
Sbjct: 302 HHPRNIKYRKE 312


>gi|116629573|ref|YP_814745.1| integrase [Lactobacillus gasseri ATCC 33323]
 gi|282852048|ref|ZP_06261406.1| tyrosine recombinase XerC [Lactobacillus gasseri 224-1]
 gi|116095155|gb|ABJ60307.1| tyrosine recombinase XerC subunit [Lactobacillus gasseri ATCC
           33323]
 gi|282556808|gb|EFB62412.1| tyrosine recombinase XerC [Lactobacillus gasseri 224-1]
          Length = 307

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 93/319 (29%), Positives = 144/319 (45%), Gaps = 15/319 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S E  K  + +   L  ER  SK T+ SY  D  +   F      E        ++   
Sbjct: 1   MSKENDKLIKQFQDYLNYERNYSKNTVSSYLNDLDEAKQFFK----ENGGFGGWDKVKSR 56

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++  F+     Q     +  R +S ++SF ++L KR++     +  +        LP+  
Sbjct: 57  DVEIFLQSLAAQNRSRTTQARKMSSLRSFYRFLVKREVLENDPMQTISLRLGEKKLPQFF 116

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            EK+   + D++  H       +  RN A+  L Y  G+R+SE  SL    I  D   + 
Sbjct: 117 YEKEMRQVFDSLAGH-----DKLVVRNRAMFELFYATGMRLSEMASLKLDQIDFDLKIIL 171

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYI 247
           + GKG+K R VP       A+ EY D     L    +    +F   RG+ L     +  +
Sbjct: 172 VHGKGNKDRYVPFGKDALDALREYRDDVRLALLGQNEDLGYVFLNNRGQKLTGRGIEYIM 231

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +Q+    G+      H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V  K+  
Sbjct: 232 QQVFIKAGVGGKVHPHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKH-- 289

Query: 308 DWMMEIYDQTHPSITQKDK 326
             +   Y +  P   +KD+
Sbjct: 290 --LQADYQKFFPRKDKKDE 306


>gi|153805793|ref|ZP_01958461.1| hypothetical protein BACCAC_00029 [Bacteroides caccae ATCC 43185]
 gi|149130470|gb|EDM21676.1| hypothetical protein BACCAC_00029 [Bacteroides caccae ATCC 43185]
          Length = 316

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 88/312 (28%), Positives = 151/312 (48%), Gaps = 17/312 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + Q L++E+ LS  TL++Y  D  + + FL            + ++  ++++ F + 
Sbjct: 17  IRKYQQYLKLEKSLSPNTLEAYLTDLDKLMSFLTLEGI------NVLEVCLSDLQRFTAG 70

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I  RS  R LSGIKSF ++L             +   K    LP  L  ++   +
Sbjct: 71  LHDIGIHPRSQARILSGIKSFFRFLLMADYLEADPSELLEGPKIGFKLPEVLTVEEIDRI 130

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +          +K    RN AIL  LY CGLR+SE ++L   ++  D+  ++++GKG K 
Sbjct: 131 I-----SAVDRSKAEGQRNRAILETLYSCGLRVSELVNLKLSDLYFDEGFIKVEGKGSKQ 185

Query: 198 RIVPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLG 255
           R+VP+ P     I  Y+      ++    +  +F   R    L+  +    I++L +  G
Sbjct: 186 RLVPISPRAINEIKLYFTDRNRIEVKKEYEDFVFVSQRRGKGLSRIMIFHMIKELAQTAG 245

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++       ++E   
Sbjct: 246 IIKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIE--- 302

Query: 316 QTHPSITQKDKK 327
             HP   +  K+
Sbjct: 303 -HHPRNIKYRKE 313


>gi|332874932|ref|ZP_08442783.1| tyrosine recombinase XerD [Acinetobacter baumannii 6014059]
 gi|323516350|gb|ADX90731.1| site-specific recombinase XerD [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332736875|gb|EGJ67851.1| tyrosine recombinase XerD [Acinetobacter baumannii 6014059]
          Length = 306

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 91/320 (28%), Positives = 146/320 (45%), Gaps = 19/320 (5%)

Query: 2   EGNNLPEIVS-FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           +   +P  V   E L   Q +   L  +  +S  T  +Y  D  Q             T 
Sbjct: 4   KKPRIPSPVQIPEHLSFLQGFRDYLVAQ-TVSPHTRNAYLSDLIQCSELHKKNRLPDWTS 62

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             I  +        + +        RS+ R LS ++ F K+L+++K+ +++ +    + K
Sbjct: 63  DDISDV--------LIELTKVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPK 114

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
              +LP+ L E+    L+          T  +  R+ A+  +LY CGLR+SE L+L  + 
Sbjct: 115 IGRALPKDLCEEDVEALI-----QAPDITTALGLRDRAMFEVLYACGLRVSELLNLRLEL 169

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I   Q  LRI GKG+K R+VPL       +  Y +        +    LF    G  ++ 
Sbjct: 170 INLKQGYLRITGKGNKERLVPLGQYACDWVERYLNEARPQFYKSSTDYLFLTQHGGIMSR 229

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             F   I++      +    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+
Sbjct: 230 QNFWYAIKRYALQANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTH 289

Query: 301 VNSKNGGDWMMEIYDQTHPS 320
           V        M +++++ HP 
Sbjct: 290 VAQVR----MQQLHEKHHPR 305


>gi|254448959|ref|ZP_05062414.1| tyrosine recombinase XerC [gamma proteobacterium HTCC5015]
 gi|198261496|gb|EDY85786.1| tyrosine recombinase XerC [gamma proteobacterium HTCC5015]
          Length = 301

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 86/312 (27%), Positives = 142/312 (45%), Gaps = 15/312 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +LQ+L  ER  S  TL +Y  D +    ++             +Q+   ++R F +  
Sbjct: 2   QRYLQHLMAERRYSSHTLDNYRRDLKALCDYIGPLPI------DWQQVIGQDVRDFAAAS 55

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +  RS+ R LS  + F ++L +      +    +   +    LP  L+  +   L+
Sbjct: 56  HRGGLASRSIARRLSAARGFFQFLIREGQLQANPAQGVPAPRGEKKLPEVLDADRLQHLL 115

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D        +    D R  AIL L Y  GLR++E  +L   ++   +  L + GKG K R
Sbjct: 116 DAP--SQRDDANSADVRERAILELFYSTGLRLAELAALDCADLRHQERDLEVVGKGSKAR 173

Query: 199 IVPLLPSVRKAILEYYDLCPFDLN---LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            V +    R+++ ++  +    L       +  LF   RG  L+    Q+ I    +  G
Sbjct: 174 HVMVGGKARESLDDWLAVRSQWLEGSGAKREDALFINQRGGRLSVRGIQQRIADYAQRRG 233

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L  +   H LRHSFATHLL + GDLR++Q +LGH  + TTQIYT+++ ++    +   YD
Sbjct: 234 LDRNLHPHMLRHSFATHLLESSGDLRAVQKLLGHANIGTTQIYTHLDFQH----LANTYD 289

Query: 316 QTHPSITQKDKK 327
           + HP   +K   
Sbjct: 290 KAHPRAKRKKDD 301


>gi|295133714|ref|YP_003584390.1| tyrosine recombinase [Zunongwangia profunda SM-A87]
 gi|294981729|gb|ADF52194.1| tyrosine recombinase [Zunongwangia profunda SM-A87]
          Length = 299

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 94/307 (30%), Positives = 151/307 (49%), Gaps = 16/307 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L  L++ERGLS  ++ SYE D  + + FL     + I+   +  +    ++ F+  
Sbjct: 7   LKDYLTYLKLERGLSVNSISSYELDLIKLINFLKV---KSISASPLT-IDQETLQLFL-Y 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +++  RS  R +SG+KSF  YL       ++    +   K    LP  ++ ++   L
Sbjct: 62  EIAKELNSRSRARIISGLKSFFNYLIFEDYRKDNPTDLIEAPKIGRKLPETISVEEIDEL 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +          TK    RN AI+  LYGCGLR+SE  +L   ++  ++  +++ GKGDK 
Sbjct: 122 I-----AAIDLTKTEGERNRAIIETLYGCGLRVSELTNLRISDLYFEEGFIKVTGKGDKQ 176

Query: 198 RIVPLLPSVRKAILEY--YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R VP+     K I  Y        ++       LF   RG  L   +    IRQL     
Sbjct: 177 RFVPISDYNIKYITIYKDQVRAHQEIKPEASDTLFLNRRGAQLTRAMIFTIIRQLAEKAN 236

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + HT RHSFATHLL NG DLR+IQ +LGH  ++TT+IY +++      ++ E+ +
Sbjct: 237 IRKKISPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEIYMHMD----RTYLREVLE 292

Query: 316 QTHPSIT 322
             HP  T
Sbjct: 293 TYHPKKT 299


>gi|108760213|ref|YP_631219.1| phage integrase family site specific recombinase [Myxococcus
           xanthus DK 1622]
 gi|34222772|sp|P59818|XERC_MYXXA RecName: Full=Tyrosine recombinase xerC
 gi|122981099|sp|Q1D804|XERC_MYXXD RecName: Full=Tyrosine recombinase xerC
 gi|27804888|gb|AAO22922.1| integrase/recombinase [Myxococcus xanthus]
 gi|108464093|gb|ABF89278.1| site-specific recombinase, phage integrase family [Myxococcus
           xanthus DK 1622]
          Length = 300

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 96/312 (30%), Positives = 144/312 (46%), Gaps = 19/312 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L    + +  +LE E+G S  T+++Y  D   F  +L    +      ++   ++  IR 
Sbjct: 4   LSPLLEKFRAHLEDEKGSSPHTVRNYLIDLVDFERYLVERMK-----LSLLSGTHAAIRG 58

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++    T      S  R L+ IKSF KYL ++K+   S    +++ K   +LP+ L  ++
Sbjct: 59  YLGTLSTDH-APASRARRLASIKSFYKYLVRQKLLPASPAKLVKSPKLPKTLPKVLPVEE 117

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++D            +  R+ AIL LLYG GLRISE   L   +I      +R+ GK
Sbjct: 118 VFAILDM-----PDVKTVLGLRDRAILELLYGGGLRISELCGLDLLDIDRSGRIVRVMGK 172

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           G K R+VP+     +A+  Y       L           +F   RG  L P    R++  
Sbjct: 173 GSKERLVPVNAQSIRALEAYLARRGELLATIRKDQAPEAMFLNFRGGRLTPRSIARHLDT 232

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                 L    + H +RHSFATHLL  G D+RSIQ +LGH  LSTTQ YT V      + 
Sbjct: 233 YVLKCALTRKVSPHAMRHSFATHLLGGGADIRSIQELLGHSSLSTTQRYTQVT----WEQ 288

Query: 310 MMEIYDQTHPSI 321
           + ++YD  HP  
Sbjct: 289 LQQVYDSAHPRA 300


>gi|90414248|ref|ZP_01222228.1| tyrosine recombinase [Photobacterium profundum 3TCK]
 gi|90324695|gb|EAS41236.1| tyrosine recombinase [Photobacterium profundum 3TCK]
          Length = 304

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 85/314 (27%), Positives = 152/314 (48%), Gaps = 16/314 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +   L K  Q + + +  ER LS  T Q+Y+         L  +      +     +   
Sbjct: 4   LPTALEKPLQLFYEYIRSERELSLHTQQNYKRQLSTIAEQLVSFE-----VTDWTMVDAG 58

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R   SK     +   S+   LS ++SF  +L ++ I   +    +   +K+  LP+ L
Sbjct: 59  WVRQIASKGMRDGLKASSISMRLSALRSFFDFLVQKDILKANPAKGVAAPRKARPLPKNL 118

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  +   L+      + +E   +  R+ A++ L+YG GLR++E +SL  ++I   +  +R
Sbjct: 119 DVDEMDQLL------SVNEDDPLSIRDRAMMELMYGAGLRLAELVSLNVRDISLSKGDIR 172

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKGDK RIVP     R+ +  +  +    L    +  LF    G  ++    Q+ + +
Sbjct: 173 VIGKGDKERIVPFAGLAREWVANWLKVR-GSLASGDESGLFVSKLGTRISTRNVQKRMAE 231

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +   +      H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++    
Sbjct: 232 WGQKQAVSSHINPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH---- 287

Query: 310 MMEIYDQTHPSITQ 323
           + ++YD+ HP   +
Sbjct: 288 LAKVYDEAHPRAKR 301


>gi|257869686|ref|ZP_05649339.1| site-specific recombinase [Enterococcus gallinarum EG2]
 gi|257803850|gb|EEV32672.1| site-specific recombinase [Enterococcus gallinarum EG2]
          Length = 299

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 92/307 (29%), Positives = 149/307 (48%), Gaps = 17/307 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           + ++ + L +ERG S  T  +Y+ D   F  FL     E         + + ++R ++S 
Sbjct: 7   QNDFFRYLIVERGYSDKTKSAYQEDMEDFFRFLKESGNE-----DFLAIDHRDVRVYLSF 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S+ R ++ ++SF  +L K ++  E+    +   KK+  LPR   EK+   L
Sbjct: 62  LNERNYSRNSISRKMASLRSFYHFLTKHEVIKENPFAYIHLKKKNAKLPRFFYEKEMEAL 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            ++V  H       +  RN A+L +LYG GLR+SE  +LT  ++  +   L I GKG+K 
Sbjct: 122 FESVKGHEP-----LQQRNRALLEILYGSGLRVSECSNLTLSDVDWENGVLLIHGKGNKD 176

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           R VP     ++A+ +Y       L   +      +F    G  +     +  + Q+ R  
Sbjct: 177 RYVPFGSYAQEALRDYVSAGRQQLMEKHHKRHEIVFVNHLGDGITATGIEYVLNQIIRKS 236

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            L      H LRH+FATHLL++G D+R++Q +LGH  LSTTQIY +V      D + + Y
Sbjct: 237 SLDSKIHPHMLRHTFATHLLNHGADMRTVQELLGHANLSTTQIYAHVT----KDSLQKNY 292

Query: 315 DQTHPSI 321
            Q HP  
Sbjct: 293 RQFHPRA 299


>gi|72161605|ref|YP_289262.1| site-specific tyrosine recombinase XerD [Thermobifida fusca YX]
 gi|71915337|gb|AAZ55239.1| tyrosine recombinase XerD [Thermobifida fusca YX]
          Length = 321

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 95/333 (28%), Positives = 145/333 (43%), Gaps = 31/333 (9%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +PE  S  L    + +L +L +ERGL+  TLQSY  D  ++L FL         I  +R 
Sbjct: 1   MPEQAS-RLHTAVRGYLDHLTVERGLAANTLQSYRRDLNRYLDFLTAR-----GITDLRD 54

Query: 66  LSYTEIRAFISKRRT-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           +   ++ +F+   R      + +G  S  R++  ++   ++  +  +T       +R   
Sbjct: 55  VRADDVASFLRTLREGDAHHRPLGANSAGRAVIAVRGLHRFALREGLTAHDPAHEVRPPA 114

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LP+A+   Q   L    L            R+ A++ LLYG G RISE + L   +
Sbjct: 115 LQRRLPKAITVAQVEAL----LAAADIGGGPRALRDRALIELLYGTGARISEVVGLDVDD 170

Query: 181 I---------MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPL 229
           +           + + +R +GKG K RIVP+    R A+  Y       L         L
Sbjct: 171 VTRLRPDPHADTEVAAVRFRGKGGKERIVPVGRYARTAVDAYLVRARPGLAAAGRGSSAL 230

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F   RG  L        +       GL    + HTLRHSFATHL+  G D+R +Q +LGH
Sbjct: 231 FLNARGGRLTRQGAWAVLHAAAERAGL-RDVSPHTLRHSFATHLIDGGADVRVVQELLGH 289

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
             ++TTQ+YT V      D + E+Y   HP   
Sbjct: 290 ASVTTTQVYTLVT----VDRLREVYAAAHPRAR 318


>gi|227488616|ref|ZP_03918932.1| site-specific tyrosine recombinase XerC [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227543219|ref|ZP_03973268.1| site-specific tyrosine recombinase XerC [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227091510|gb|EEI26822.1| site-specific tyrosine recombinase XerC [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227181028|gb|EEI62000.1| site-specific tyrosine recombinase XerC [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 295

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 88/314 (28%), Positives = 151/314 (48%), Gaps = 20/314 (6%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + + +  +  +++  +L    G S+ T++ Y  D      +L            +   + 
Sbjct: 1   MATPDFHELIEDYCDHLRFNEGKSEATIRGYRSDLLLACEYLNG----------VAGFTL 50

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           T +RA++ +  +      +L R  + ++SF  +  K+    E     +R   KS+ LP  
Sbjct: 51  TGLRAWLGEAVSAGKSRATLARRTAAVRSFSAWAHKQGYLEEDAARRLRVPYKSHHLPTV 110

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L   QA  ++ N   H+  E      R+SAIL LLY  G+R++E  SL   ++   ++T+
Sbjct: 111 LTSDQAGEMMGNAGSHSEPEF----LRDSAILELLYATGMRVAELCSLDVADVDGAKNTV 166

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           ++ GKG+K R+VP     R A+ ++           +    LF G+RG  ++P   +R +
Sbjct: 167 KVTGKGNKQRVVPFGAPARNALDQWISAGRGHFATADSGDALFLGVRGGRIDPRQVRRIV 226

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                  G+    T H+LRH+ ATHLL  G DLR++Q  LGH  L TTQIYT+V+ +   
Sbjct: 227 ETAAANTGVD-GITPHSLRHTAATHLLEGGADLRAVQEFLGHSSLQTTQIYTHVSGER-- 283

Query: 308 DWMMEIYDQTHPSI 321
             + +IY+  HP  
Sbjct: 284 --LKKIYNNAHPRA 295


>gi|78186473|ref|YP_374516.1| tyrosine recombinase XerD [Chlorobium luteolum DSM 273]
 gi|78166375|gb|ABB23473.1| Tyrosine recombinase XerD [Chlorobium luteolum DSM 273]
          Length = 306

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 84/312 (26%), Positives = 149/312 (47%), Gaps = 13/312 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +     +  + +L  L IER  +  T +SY  D  ++L+ +            +  ++  
Sbjct: 6   LDAAYSRVLEGFLDYLFIERNFAGNTRESYRNDLGRYLLAMQE------DDVPLEAITAE 59

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            I  F+       +   S+ R++S I+S  ++L        +    +   K++  LP  L
Sbjct: 60  RINHFVLALHQAGLEPSSIARNVSAIRSLHRFLFNEHRLASNPAETLHQPKQARYLPAVL 119

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
             ++   +++  +L +      +  R+ AIL LLY  G+R++E + +T QN+  D+  +R
Sbjct: 120 TLQETERVLEAPMLQSPPGRFLL--RDRAILELLYASGIRVTELVDMTQQNLYLDERFIR 177

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           I GKG K R+VP+  +    I  Y + L     N N    LF   RG+ L        ++
Sbjct: 178 IFGKGSKERLVPIGDAAAAWIRRYREELRMKLSNRNSLDHLFLNARGRKLTRMAVYNMVK 237

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +  R  G+  + + HT RH+FATHLL  G DLR++Q +LGH  +  TQIYT+++      
Sbjct: 238 EYARLAGIEKNISPHTFRHTFATHLLEGGADLRAVQEMLGHSSIVATQIYTHID----RT 293

Query: 309 WMMEIYDQTHPS 320
           ++ E++   HP 
Sbjct: 294 FVKEVHRTCHPR 305


>gi|220912958|ref|YP_002488267.1| integrase [Arthrobacter chlorophenolicus A6]
 gi|219859836|gb|ACL40178.1| integrase family protein [Arthrobacter chlorophenolicus A6]
          Length = 295

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 90/304 (29%), Positives = 141/304 (46%), Gaps = 11/304 (3%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +   L  ER LS  T ++Y  D    L F A           +  L    +R ++  +
Sbjct: 2   EGFAAYLSGERALSPHTRRAYLGDLESLLAFAASE-----GAAELEDLELGTLRRWLGAQ 56

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   +L R  + I++F  +  + +       L ++  K+  SLP  L   Q   L+
Sbjct: 57  SQSGAARATLARRSATIRAFTAWALREEYLEADPALRLKAPKREQSLPGVLQAPQLERLL 116

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L   + +   +  RN AI+ LLY  G+R+ E  +L   N+  D+ TLR+ GKG+K R
Sbjct: 117 KE-LEDGAADGDPMAVRNRAIVELLYATGIRVGELAALDVDNLDPDRRTLRVIGKGNKER 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
            VP       A+ ++       +  +   P LF G+RG  ++    +  +  L   +G  
Sbjct: 176 TVPYGVPAALAVDDWLRRGRPLMAKDTSGPALFLGLRGGRVDQRQVRSVVHGLFEAMGDT 235

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            ++  H LRHS ATHLL  G DLR++Q ILGH  L+TTQIYT+V+     D + + Y Q 
Sbjct: 236 SASGPHALRHSAATHLLDGGADLRAVQEILGHSSLATTQIYTHVS----VDRLRKSYQQA 291

Query: 318 HPSI 321
           HP  
Sbjct: 292 HPRA 295


>gi|296126655|ref|YP_003633907.1| tyrosine recombinase XerD [Brachyspira murdochii DSM 12563]
 gi|296018471|gb|ADG71708.1| tyrosine recombinase XerD [Brachyspira murdochii DSM 12563]
          Length = 310

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 153/309 (49%), Gaps = 17/309 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L    +E+GLS  TL+SY+ D   +L FL          +TI + +  +I  F+S+R+ 
Sbjct: 15  YLNYEAVEKGLSSNTLESYKRDIVIYLDFLTR------NKKTILKATRKDIEKFLSERKE 68

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q    R++ R+   I +  K+L      +++   N+  ++    LP +L   +   L+  
Sbjct: 69  QGSKSRTVARNKVSIVNLYKFLVMENYISKNPTDNLEVIRLKRVLPESLTTTEVDDLLSV 128

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                 +E      R+ AI  L+Y  GLR+SE  SL   +I  +   L+I+GKG+K RIV
Sbjct: 129 H-----NEKTDKGLRDKAIFELMYSSGLRVSEICSLRIDDIFFEGKYLKIRGKGNKERIV 183

Query: 201 PLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+       +  Y        +       LF   RG  ++     + +++  +   +  +
Sbjct: 184 PINDRALDILQRYIQTSRVIMVKGKKTSELFLNFRGDKISRVGIWKIVKETMKKSNITKN 243

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              HTLRHSFATHL+ +G DLR++Q +LGH  ++TT+IYT+V+S +    + +     HP
Sbjct: 244 VYPHTLRHSFATHLIQHGADLRAVQRMLGHSDITTTEIYTHVDSSHLKKQIAK-----HP 298

Query: 320 SITQKDKKN 328
             ++  ++N
Sbjct: 299 KHSKHARQN 307


>gi|30248355|ref|NP_840425.1| phage integrase domain/SAM domain-containing protein [Nitrosomonas
           europaea ATCC 19718]
 gi|30138241|emb|CAD84249.1| Phage integrase:Phage integrase N-terminal SAM-like domain
           [Nitrosomonas europaea ATCC 19718]
          Length = 321

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 95/313 (30%), Positives = 151/313 (48%), Gaps = 17/313 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE------EKITIQTIRQLSYTEIRA 73
            +L  L   R LS LT  SY  D    +  +A   +       ++T  ++ +L   +IR 
Sbjct: 18  EYLAYLASTRSLSLLTQHSYRRDLVALVCCIAAQHQSEHENGHEVTDASLTRLHSHDIRH 77

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           FI+      +  RSL R LS  + F +YL +    TE+   ++R  K    LP AL+  +
Sbjct: 78  FIAHLHHGGLSGRSLARMLSAWRGFYRYLMRHHHHTENPCQDIRVPKSPRKLPHALSPDE 137

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           A  L+             +  R+ A+  L Y  GLR++E   L P +I   +  +R+ GK
Sbjct: 138 AAQLL------AFDPADALATRDLAMFELFYSSGLRLAELTRLQPTDIDFSEGIVRVTGK 191

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K RIVP+     +A+  +  L    L    +  LF    G+ ++P      + Q  R 
Sbjct: 192 GSKTRIVPVGEPALRALQAWLPLRSAWLTSG-ETALFLSRHGQRIHPRTIAVRLHQRARL 250

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRHSFA+HLL + GDLR++Q +LGH  + +TQ+YT+++ ++    + +I
Sbjct: 251 QNLDDRVHPHALRHSFASHLLQSSGDLRAVQEMLGHSSIRSTQVYTHLDFQH----LAKI 306

Query: 314 YDQTHPSITQKDK 326
           YDQ HP   ++ K
Sbjct: 307 YDQAHPRAKKRPK 319


>gi|167630281|ref|YP_001680780.1| tyrosine recombinase xerc, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167593021|gb|ABZ84769.1| tyrosine recombinase xerc, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 340

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 91/317 (28%), Positives = 147/317 (46%), Gaps = 13/317 (4%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           +  + E       +L+ L  E   +  T  +Y  D  Q +  L         +  + ++S
Sbjct: 34  QAPTAEWDCWIDRYLRYLAAEGNHAIHTRSAYASDLAQLIELLEQTDS---GVPRLPEVS 90

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
              +R  I++     +   SL R L+  + F +YL +    T   +  +++ K    LP+
Sbjct: 91  ADRLRLCITRLYAVGMERSSLARKLAAWRGFFRYLVREGQLTSHPMKRLKSPKLGRPLPK 150

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L+E +   L+           + +  RN A++ L Y  GLR++E   L   ++      
Sbjct: 151 TLSESEVSCLLS---AAERRGDEPLALRNLAMVELFYASGLRVAELCGLDLGSVDAGLGY 207

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQ 244
           +R+ GKG K RIVP+     +AI  Y       L    +     LF   RG+ L+    Q
Sbjct: 208 VRVLGKGGKERIVPVGEQALEAISRYLKQGRPALARRQREVSPALFLNHRGRRLSVRGAQ 267

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             + ++     L    + HTLRH+FATHLL  G DLRS+Q +LGH +LSTTQIYT+V+++
Sbjct: 268 DILSRIADGAALERGISPHTLRHTFATHLLDGGADLRSVQEMLGHAKLSTTQIYTHVSAE 327

Query: 305 NGGDWMMEIYDQTHPSI 321
                + EIY +THP  
Sbjct: 328 R----LKEIYHKTHPRA 340


>gi|193222420|emb|CAL63069.2| Tyrosine recombinase xerC [Herminiimonas arsenicoxydans]
          Length = 318

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 91/318 (28%), Positives = 152/318 (47%), Gaps = 21/318 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L NL  +R LS LT+ SY  D  + L               +  +S+ +IR F ++
Sbjct: 10  LDGYLDNLISQRQLSPLTITSYRRDLLELLALATASDGN----AALSAISHFQIRKFAAQ 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + +  RS+ R LS  + F  +L ++     + +  ++  K++  LP+AL    A+ L
Sbjct: 66  LHAKGLNARSIARKLSAWRGFFTWLSEQNAVASNPVDGIKAPKRNKPLPKALAADDAVRL 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ-----------NIMDDQS 186
           V +     + +   +   N A+  LLY  GLR SE + L  +            I  D  
Sbjct: 126 VSSNSPGKNADAT-MQLCNRAMFELLYSSGLRASELVGLDLKYAQENRYTSAGWIDFDAH 184

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
              + GKG K+R  P+      A+  +  +    L L+   PLF   RG  ++  V Q  
Sbjct: 185 EAMVTGKGSKMRSAPIGQPAIDALKAWLAVRDTLLKLDPH-PLFLSERGTRISARVLQLR 243

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           ++   + +GLP+    H LRHSFA+H+L + GDLR++Q +LGH  +S TQIYT+++ +  
Sbjct: 244 LKAHAQAVGLPMDVHPHVLRHSFASHVLQSSGDLRAVQEMLGHASISATQIYTSLDFQR- 302

Query: 307 GDWMMEIYDQTHPSITQK 324
              + ++YD  HP   +K
Sbjct: 303 ---LAQVYDAAHPRAKKK 317


>gi|166713420|ref|ZP_02244627.1| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 323

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 89/326 (27%), Positives = 147/326 (45%), Gaps = 24/326 (7%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
              LP + + +     + +L     E+G+++ TL+SY  D      +        + I  
Sbjct: 13  AQQLPPLQAAD-AGVIERFLDRFWAEQGVARQTLESYRRDLEGLARWRDGAGGGLLGI-- 69

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
                   +  ++  R       RS  R LS +++F  +  +  + ++     +   +  
Sbjct: 70  ----DRAALFDYLRWRAQATYSPRSTARLLSTLRAFYGWCLRDGVRSDDPTALIDPPQLP 125

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            SLP+AL E Q   L+                R+ A+L L+Y  GLR+SE ++L    + 
Sbjct: 126 RSLPKALTESQIEALL-----AAPEVDTPAGLRDRAMLELMYAAGLRVSELVNLPAVGVN 180

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-------QLPLFRGIRG 235
             Q  LR+ GKG K R+VPL    +  +  Y       L  N        Q+PLF     
Sbjct: 181 LRQGVLRVTGKGSKDRLVPLGEESQHWLERYLRQARPLLAANKPVAAVDGQVPLFIDAAR 240

Query: 236 KPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           + L+   F   +++     G+ P + + H LRHSFATHLL++G DLR++Q +LGH  LST
Sbjct: 241 QALSRQHFWALVKRYAAVAGIDPATVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLST 300

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPS 320
           TQIYT V  ++    + +++   HP 
Sbjct: 301 TQIYTLVARQH----LQKLHASHHPR 322


>gi|330501235|ref|YP_004378104.1| site-specific tyrosine recombinase XerC [Pseudomonas mendocina
           NK-01]
 gi|328915521|gb|AEB56352.1| site-specific tyrosine recombinase XerC [Pseudomonas mendocina
           NK-01]
          Length = 298

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 89/311 (28%), Positives = 150/311 (48%), Gaps = 17/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +      +L++L  ER +S  TL  Y  D  + L F      E   +    +L    +R 
Sbjct: 1   MHDRLDAYLEHLRRERQVSVHTLDGYRRDLGKVLAFC-----EAEGLSDWAELDTRNLRR 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            +++   Q +  RSL R LS  +   +YL +  +        +   K+   LPR L+  +
Sbjct: 56  LVARLHQQGLSSRSLARLLSATRGLYQYLLREGLCRHDPATGLSPPKRERRLPRTLDADR 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           +  L+D      + E  +I  R+ A+L L Y  GLR+SE + L    +      +R++GK
Sbjct: 116 SAQLLDG-----AVEDDFIARRDQAMLELFYSSGLRLSELVGLDLDGLDLPAGLIRVRGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K+R +P+    R+A+ ++  L    L       +F   +G+ L P   Q  + Q    
Sbjct: 171 GNKVRELPVGSLARQALEQWLPLR--KLANPSDGAVFISQQGRRLGPRAVQLRVHQAGVR 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRHSFA+H+L +  DLR++Q +LGH  ++TTQIYT+++ ++    +  +
Sbjct: 229 -ELGQHLHPHMLRHSFASHMLESSQDLRAVQELLGHADIATTQIYTHLDFQH----LANV 283

Query: 314 YDQTHPSITQK 324
           YDQ HP   +K
Sbjct: 284 YDQAHPRAKRK 294


>gi|262091779|gb|ACY25367.1| site-specific recombinase XerD [uncultured actinobacterium]
          Length = 308

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 94/312 (30%), Positives = 150/312 (48%), Gaps = 26/312 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L +L+IERGL+  ++ +Y  D  +F IFL          +++ ++    I  F    R
Sbjct: 14  SFLNHLQIERGLAANSIAAYRRDLVKFSIFLGS--------KSLSEVDSNAINDFEISLR 65

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
             K+   S+ R  S ++SF K+  +++       L +   K +  LP+AL   Q ++++D
Sbjct: 66  EAKLSVASINRVDSTLRSFFKH-LQQEYGYADPTLEIAPQKSARRLPKALTISQIVSMID 124

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN------IMDDQSTLRIQGK 193
                   E + I AR+ A+L LLY  G R+SE + +   +           +TL+++GK
Sbjct: 125 V----AYREGQPITARDQAMLELLYSSGARVSELIGINLNDLSSIDTSDGKVTTLKLRGK 180

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQL 250
           G K RIVPL     KA+  Y      DL          LF   RG  ++     + +   
Sbjct: 181 GAKERIVPLGSFATKAVENYLVRVRPDLASKSSKVTSALFLNSRGSRISRQSAWQMVLDA 240

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+    + H  RHS+ATHLL+ G D+R +Q +LGH  ++TTQIYT +      D +
Sbjct: 241 ADAAGITEHVSPHVFRHSYATHLLNGGADIRVVQELLGHASVTTTQIYTLIT----IDKV 296

Query: 311 MEIYDQTHPSIT 322
            E Y  THP  T
Sbjct: 297 RESYALTHPRAT 308


>gi|121634218|ref|YP_974463.1| putative integrase/recombinase [Neisseria meningitidis FAM18]
 gi|166918892|sp|A1KS31|XERC_NEIMF RecName: Full=Tyrosine recombinase xerC
 gi|120865924|emb|CAM09661.1| putative integrase/recombinase [Neisseria meningitidis FAM18]
          Length = 305

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 85/313 (27%), Positives = 148/313 (47%), Gaps = 13/313 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
                  +L+N+  E G S+ T+ +Y  D  +    LA    E +     + LS  +  A
Sbjct: 6   FAAHFDAYLENIVRE-GKSEHTVAAYRRDLEELFALLAQMPSEDVG-GVPQDLSRRDFTA 63

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            + +   + +  R+L R LS  + +  +L +R +       +++  K+   +P+AL ++ 
Sbjct: 64  ALRRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEW 123

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++D  +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GK
Sbjct: 124 LNRMLDLPV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGK 179

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R VPL     +A+  Y  L     +      LF G  G  L+    Q+ + Q    
Sbjct: 180 GRKQRQVPLTGKSVEALKNYLPLRQTASDGK---ALFTGRNGTRLSQRQIQKRLAQWAAQ 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G     + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +
Sbjct: 237 NGDGRHVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARL 292

Query: 314 YDQTHPSITQKDK 326
           YD+ HP   ++D+
Sbjct: 293 YDEAHPRAKRRDE 305


>gi|189485661|ref|YP_001956602.1| tyrosine recombinase XerD [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287620|dbj|BAG14141.1| tyrosine recombinase XerD [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 294

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 158/305 (51%), Gaps = 17/305 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +   +++  + +E+GLS+ T+ +Y+ D  +F+ F            ++    + +I  F+
Sbjct: 6   EALNDFISYIIVEKGLSENTVLAYKADVLKFINFAKKKRI------SLENFEHNDITDFL 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            + +T+ +  RS+ R +  ++ F K+L    +   +  L +       +LP  L   +  
Sbjct: 60  WEMKTEGLKPRSIFRVIESLRQFYKFLNSEDLAKNNPTLYLATPNLPENLPDILTFDEVD 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L++++     ++   +  RN A+L LLY  GLR+SE ++L   +I  +   LRI GKG 
Sbjct: 120 LLLNSI-----NDDDEMHIRNKAMLELLYAAGLRVSELINLKFSDINLEDCFLRIIGKGS 174

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R+VP     +  I  Y       LN+N    +F    GK L+   F R ++ + + +G
Sbjct: 175 KERLVPFGNKAKFFISIYLKKRRPCLNVNDH--IFISRLGKKLSRIEFWRQLKNIAKNVG 232

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + T HTLRHSFA+HLL  G D+R +Q +LGH  ++TTQIYT+++     D +++ + 
Sbjct: 233 INKNITPHTLRHSFASHLLKGGADIRFVQEMLGHASITTTQIYTHLDE----DRIVQQHK 288

Query: 316 QTHPS 320
           + HP 
Sbjct: 289 KFHPR 293


>gi|170703226|ref|ZP_02894029.1| tyrosine recombinase XerC [Burkholderia ambifaria IOP40-10]
 gi|170131859|gb|EDT00384.1| tyrosine recombinase XerC [Burkholderia ambifaria IOP40-10]
          Length = 306

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 89/321 (27%), Positives = 161/321 (50%), Gaps = 29/321 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                +L NL+  R LS+ TL++Y  +  +     A         + +  L+  ++R  +
Sbjct: 4   DPIAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAG--------RPLDTLTAVDMRGAV 55

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++     +  RS+   LS  ++F ++L +R     + +  +R  K+  +LP+AL+   A 
Sbjct: 56  ARAHAGGLSARSIAHRLSAWRAFYRWLAQRIEMPANPVAAVRAPKRPKTLPKALSVDDAS 115

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP-----------QNIMDD 184
            L+D  L  T+        R+ AIL L Y  GLR++E + L               +  D
Sbjct: 116 ALMDAPLAGTTE-----GIRDHAILELFYSSGLRLAELIGLDVMYTQADGYRSAGWLDLD 170

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           ++ + ++GKG+K R VP+      A+  +  +    +  +   PLF  +RG  + PGV +
Sbjct: 171 EAEVTVRGKGNKERKVPVGRKAIDALNAWLAVRGEFVKHDPH-PLFVSVRGNRMAPGVVR 229

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  +S TQ+YT+++ +
Sbjct: 230 ERVKRAALTAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYTSLDFQ 289

Query: 305 NGGDWMMEIYDQTHPSITQKD 325
           +    + +IYD  HP   ++D
Sbjct: 290 H----LAKIYDSAHPRAKKRD 306


>gi|89895297|ref|YP_518784.1| hypothetical protein DSY2551 [Desulfitobacterium hafniense Y51]
 gi|89334745|dbj|BAE84340.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 298

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 99/300 (33%), Positives = 156/300 (52%), Gaps = 15/300 (5%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           +L+ +   S+ TL +Y  D  QF  F A    E+    T+ Q+    +R+F+ +   + +
Sbjct: 13  HLKTQ-NRSQHTLMAYHKDLIQFFEFAARELGEEPEKVTVDQVDIYIVRSFLGEMTERGL 71

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
             +S+ R LS +++F K+L +  I  ++ I  +   K    LP  L+ ++   L+     
Sbjct: 72  ERKSMARKLSALRAFFKFLCREGILQKNPIQRIATPKLGRKLPHFLSLEELDRLI----- 126

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
            T      + AR+  IL LLYG GLR+SE   L  ++I +  S LR++GKG+K RIVPL 
Sbjct: 127 RTPDCATLLGARDQVILELLYGSGLRVSELADLNCRDIDEGTSLLRVRGKGNKERIVPLT 186

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
               +A  +Y ++       + Q  L    +G  L+    +R +  L    GL      H
Sbjct: 187 HYALEAARQYLEMR-----EDKQEALLLNYQGTRLSVRSIRRILDGLALEAGLSQHLHPH 241

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            LRHSFATHLL  G DLRS+Q +LGH +LS+TQIYT++  +     + E+Y+Q HP   +
Sbjct: 242 MLRHSFATHLLDGGADLRSVQELLGHAKLSSTQIYTHLTKER----LREVYEQNHPRAKK 297


>gi|118473200|ref|YP_886852.1| site-specific tyrosine recombinase XerC [Mycobacterium smegmatis
           str. MC2 155]
 gi|166918888|sp|A0QVB4|XERC_MYCS2 RecName: Full=Tyrosine recombinase xerC
 gi|118174487|gb|ABK75383.1| tyrosine recombinase XerC [Mycobacterium smegmatis str. MC2 155]
          Length = 300

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 143/305 (46%), Gaps = 10/305 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +   L +ERG S  T ++Y  D      F+   T E+    ++ ++S   +R+++++
Sbjct: 5   LDQFDAYLGLERGHSDHTRRAYRGDLTALFDFVEQRTGER----SLARVSLPLLRSWLAE 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +        +L R  S +K+F  +  +R +        ++  K   +LP  L   QAL  
Sbjct: 61  QSASGAARTTLARRTSSVKTFCAWALRRGLIGVDPAARLQVPKARRTLPAVLRRDQALDA 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D V    + E   I  R+  I+ LLY  G+R+SE   L   +I   +  +R+ GKG+K 
Sbjct: 121 LDAV-NSGAQEGDPIALRDRLIVELLYATGIRVSELCGLDIDDIDTSRRVVRVLGKGNKQ 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R VP       A+  +       L++    P L  G RG+ L+P   +  + Q    +  
Sbjct: 180 RTVPFGEPAHAALTAWLTEGRPQLSIPESGPALLLGARGRRLDPRQARTVVHQTVSAVNG 239

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V  +     +  ++DQ
Sbjct: 240 APDIGPHGLRHSAATHLLEGGADLRIVQELLGHTSLATTQLYTHVTVER----LRAVHDQ 295

Query: 317 THPSI 321
            HP  
Sbjct: 296 AHPRA 300


>gi|299142044|ref|ZP_07035178.1| tyrosine recombinase XerD [Prevotella oris C735]
 gi|298576506|gb|EFI48378.1| tyrosine recombinase XerD [Prevotella oris C735]
          Length = 307

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 150/309 (48%), Gaps = 16/309 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L+ L++ER  S+ TL +Y  D    + +      E      +  L   +++ F + 
Sbjct: 12  LKSYLRYLKLERNYSQNTLDAYSHDITWLMDYCKREGLE------MTALQLEDLQHFAAT 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
               +IG RS  R LSGI+SF ++L             + +      LP  L+  +   L
Sbjct: 66  LHEFQIGPRSQSRILSGIRSFYRFLLLDGYIETDPTELLESPALGQHLPEVLSTAEVDML 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
             ++ L     +K    RN AI+ +L+ CGLR+SE ++L    +  D   +R+ GKG K 
Sbjct: 126 EQSIDL-----SKPEGQRNRAIIEVLFSCGLRVSELVNLKLSQLYLDDGFIRVLGKGSKE 180

Query: 198 RIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+ P   K +  ++      ++    +  +F   RG  L   +    I++     G+
Sbjct: 181 RLVPISPRAIKELQLWFTDRVHLNIKPGEEDFVFLNRRGHHLTRTMILIMIKRQAEEAGI 240

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++      + E    
Sbjct: 241 KKTISPHTLRHSFATALLQGGADLRAIQAMLGHESIGTTEIYTHIDT----TTLREEILN 296

Query: 317 THPSITQKD 325
            HP   +K+
Sbjct: 297 HHPRNMRKN 305


>gi|237721804|ref|ZP_04552285.1| integrase [Bacteroides sp. 2_2_4]
 gi|299144803|ref|ZP_07037871.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_23]
 gi|229448673|gb|EEO54464.1| integrase [Bacteroides sp. 2_2_4]
 gi|298515294|gb|EFI39175.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_23]
          Length = 319

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 88/312 (28%), Positives = 147/312 (47%), Gaps = 17/312 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + Q L++E+ LS  TL +Y  D  + + FL            +  +  ++++ F + 
Sbjct: 17  IRKYQQYLKLEKSLSLNTLDAYLTDLDKLMSFLTLEGI------NVLDVCLSDLQRFAAG 70

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I  RS  R LSGIKSF ++L             +   K    LP  L  ++   +
Sbjct: 71  LHDIGIHPRSQARILSGIKSFFRFLILENYLEADPSELLEGPKIGFKLPEVLTVEEIDRI 130

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +          +K    RN AIL  LY CGLR+SE ++L   ++  D+  ++++GKG K 
Sbjct: 131 I-----SAVDRSKAEGQRNRAILETLYSCGLRVSELITLKLSDLYFDEGFIKVEGKGSKQ 185

Query: 198 RIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLG 255
           R+VP+ P     I  Y       ++    +  +F   R    L+  +    I++L    G
Sbjct: 186 RLVPISPRAINEIKLYIPDRNQIEVKKGHEDFVFVSQRRGKGLSRIMIFHMIKELAEKAG 245

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++       ++E   
Sbjct: 246 ITKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIE--- 302

Query: 316 QTHPSITQKDKK 327
             HP   +  K+
Sbjct: 303 -HHPRNIKYRKE 313


>gi|219669732|ref|YP_002460167.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
 gi|219539992|gb|ACL21731.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
          Length = 298

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 100/300 (33%), Positives = 156/300 (52%), Gaps = 15/300 (5%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           +L+ +   S+ TL +Y  D  QF +F A    E+    T+ Q+    +R+F+ +   + +
Sbjct: 13  HLKTQ-NRSQHTLMAYHKDLIQFFVFAARELGEEPEKVTVDQVDIYIVRSFLGEMTDRGL 71

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
             +S+ R LS +++F K+L +  I  ++ I  +   K    LP  L+ ++   L+     
Sbjct: 72  ERKSMARKLSALRAFFKFLCREGILQKNPIQRIATPKLGRKLPHFLSLEELDRLI----- 126

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
            T      + AR+  IL LLYG GLR+SE   L  Q+I    S LR++GKG+K RIVPL 
Sbjct: 127 RTPDCATLLGARDQVILELLYGSGLRVSELADLNRQDIDAGSSLLRVRGKGNKERIVPLT 186

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
               +A  +Y ++       + Q  L    +G  L+    +R +  L    GL      H
Sbjct: 187 NYALEAARQYLEMR-----EDKQEALLLNYQGTRLSVRSIRRILDGLALEAGLSQHLHPH 241

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            LRHSFATHLL  G DLRS+Q +LGH +LS+TQIYT++  +     + E+Y+Q HP   +
Sbjct: 242 MLRHSFATHLLDGGADLRSVQELLGHAKLSSTQIYTHLTKER----LREVYEQNHPRAKK 297


>gi|315186395|gb|EFU20155.1| integrase family protein [Spirochaeta thermophila DSM 6578]
          Length = 312

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 93/328 (28%), Positives = 155/328 (47%), Gaps = 22/328 (6%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           MEG ++  +    L+     +L +L   RGLS+ T++SY  D  +   FL          
Sbjct: 3   MEGGSVSTLHQETLID---RFLAHLSHMRGLSEATVRSYRNDLVKVGAFLEKLG------ 53

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             +   +  +IR  +++    +    S+ R LS ++S+ ++L++  +  +S +  + ++K
Sbjct: 54  TDLVSATREDIRHCVAEYTLARQAPSSINRMLSSLRSWYRFLRREGVRIDSPMEGISSVK 113

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LP  L E +   L+D         + +   R+ A+L +LY  G R+ E +SLT   
Sbjct: 114 AGKRLPSFLFEDEVDRLLDI------EGSDFASLRDRALLEVLYSTGCRVQELVSLTISG 167

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIRGKP 237
           +   +    ++GKG K R++ L    RKA+  Y  L    L       +  LF   +G P
Sbjct: 168 VQVSRGWCVVKGKGGKERLLFLGLGARKALAAYLPLRQALLERMGRREEGALFVNQKGSP 227

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L        I +  R  GL    + H  RHSFATH+LS G DLR +Q +LGH  LSTTQ+
Sbjct: 228 LTTRGVAYIIERRAREKGLEKRISPHVFRHSFATHVLSRGADLRVVQEMLGHASLSTTQV 287

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           YT+++       +  +Y + HP   + D
Sbjct: 288 YTHLS----LPALKRMYRKAHPHAERSD 311


>gi|240170150|ref|ZP_04748809.1| site-specific tyrosine recombinase XerD [Mycobacterium kansasii
           ATCC 12478]
          Length = 313

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 88/323 (27%), Positives = 143/323 (44%), Gaps = 19/323 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + +  L  + Q +L +L IERG++  TL SY  D R++   L     E   I  +  +  
Sbjct: 1   MTTLTLDTQLQGYLDHLAIERGVAANTLSSYRRDLRRYTKHL-----EDRGITDLAAVGE 55

Query: 69  TEIRAFISKRRTQK-------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            ++  F+   R          +   S  R+L  ++   ++     +        +R    
Sbjct: 56  DDVSDFLVALRRGDPDSGATALAAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTP 115

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              LP++L   Q L L++        +   +  RN A+L LLY  G RISEA+ L   ++
Sbjct: 116 GRRLPKSLTVDQVLALLEGAGGDNPADG-PLTLRNRALLELLYSTGSRISEAVGLDVDDV 174

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLN 239
                ++ ++GKG K R+VP+      A+  Y      DL    +    +F   RG  L+
Sbjct: 175 DTHARSVLLRGKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLS 234

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                + ++      G+    + H LRHSFATHLL  G D+R +Q +LGH  ++TTQIYT
Sbjct: 235 RQSAWQVLQDAAECAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 294

Query: 300 NVNSKNGGDWMMEIYDQTHPSIT 322
            V        + E++   HP  T
Sbjct: 295 LVT----VHALREVWAGAHPRAT 313


>gi|332886009|gb|EGK06253.1| tyrosine recombinase XerD [Dysgonomonas mossii DSM 22836]
          Length = 299

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 149/307 (48%), Gaps = 16/307 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   L +E+ LS  ++ +Y  D  +   FL     +      +  ++   ++ F+++
Sbjct: 8   VRKYRNYLLLEKSLSPNSIDAYMTDLAKLSGFLQNENLK------VEDVTLDNLQQFVAQ 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I  RS+ R +SGIKSF  +L             + + K    LP  L   +   L
Sbjct: 62  LYDIGINARSVARIISGIKSFYDFLVLDGYMQNDPTELLDSPKIGLKLPTVLALDEIEKL 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +  + L T         RN AIL  LY CGLRISE  +L   ++  D+  +++QGKG K 
Sbjct: 122 MSVIDLSTKE-----GQRNRAILETLYSCGLRISELTTLKFSDLFFDEGFIKVQGKGSKQ 176

Query: 198 RIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +  K I +Y       ++    +  LF   RG  ++  +   +I++     G+
Sbjct: 177 RLVPISHTAIKEIEKYLIYRKEINVKKGSEDALFLSNRGTAISRIMVFHFIKEYAIQAGI 236

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HT RHSFATHLL  G ++R+IQ +LGH +++TT+IYT+++ +     ++E    
Sbjct: 237 KKTISPHTFRHSFATHLLEGGANIRAIQLMLGHEKITTTEIYTHMDREYLRQEIIE---- 292

Query: 317 THPSITQ 323
            HP   +
Sbjct: 293 HHPRNRR 299


>gi|224476375|ref|YP_002633981.1| putative site-specific recombinase XerC [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|254799358|sp|B9DPG4|XERC_STACT RecName: Full=Tyrosine recombinase xerC
 gi|222420982|emb|CAL27796.1| putative site-specific recombinase XerC [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 296

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 86/310 (27%), Positives = 157/310 (50%), Gaps = 16/310 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K ++++L  L++ER  SK TL+SY  D  QF  FL     +      ++   Y + R ++
Sbjct: 3   KIQESFLYMLKVERFFSKHTLKSYHDDLVQFNAFLEHEHLK------LKSFEYKDARNYL 56

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           S   ++ +   ++ R +S ++SF ++   +  T  +  + + + KK   LP    E++  
Sbjct: 57  SFLYSKGLKRTTVSRKISTLRSFYEFWMTQDDTVVNPFVQLVHPKKEQYLPHFFYEEEMS 116

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L +     T         R+  IL LLYG G+R+SE +++  +++  +   +++ GKG+
Sbjct: 117 ALFE-----TVEADGHKGLRDRVILELLYGTGIRVSELVNIKLEDLDLNSPGVKVLGKGN 171

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R +P     R++I  Y +L P   N+     L   I G+P+     +  +  + +   
Sbjct: 172 KERFIPFGNMCRESIERYLELFPPIQNVK-HDYLLVNINGRPITERGVRYVLNDIVKRTA 230

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                  H LRH+FATH+L+ G DLR++QS+LGH  LSTT  YT+V+++     + ++Y 
Sbjct: 231 GVTDIHPHKLRHTFATHMLNEGADLRTVQSLLGHVNLSTTGRYTHVSNQQ----LRKVYL 286

Query: 316 QTHPSITQKD 325
             HP   ++ 
Sbjct: 287 NAHPRAKKEK 296


>gi|255320980|ref|ZP_05362153.1| tyrosine recombinase XerD [Acinetobacter radioresistens SK82]
 gi|262379931|ref|ZP_06073086.1| tyrosine recombinase XerD [Acinetobacter radioresistens SH164]
 gi|255301944|gb|EET81188.1| tyrosine recombinase XerD [Acinetobacter radioresistens SK82]
 gi|262298125|gb|EEY86039.1| tyrosine recombinase XerD [Acinetobacter radioresistens SH164]
          Length = 306

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 94/316 (29%), Positives = 157/316 (49%), Gaps = 23/316 (7%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +PE +SF  L+  +++L    I + +S  T  +Y  D  Q   +           + I  
Sbjct: 14  IPEHLSF--LQGFRDFL----IAQTVSPHTRNAYLSDLIQCSEYCPSTPLPLWNSEDIAD 67

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +        + +   Q    RS+ R+LS ++SF K+++++++ +++ +   +  K   +L
Sbjct: 68  V--------LFELTKQGKSPRSIARTLSALRSFFKFMREQQLRSDNPVATHKTPKLGRAL 119

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P+ L+E          LLH       +  R+ A+L +LY CGLR++E L+L  + I   Q
Sbjct: 120 PKDLSELDVE-----HLLHAPDINTALGLRDRAMLEVLYACGLRVTELLNLRLELINLKQ 174

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             LRI GKG+K R+VPL     + + +Y +     L  +    LF    G  ++   F  
Sbjct: 175 GYLRITGKGNKERLVPLGQVAIEWVEKYLNEARPQLYKSATDYLFLTQHGGIMSRQNFWY 234

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            I++     G+    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V    
Sbjct: 235 AIKRYALQAGIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQ-- 292

Query: 306 GGDWMMEIYDQTHPSI 321
               M +++   HP  
Sbjct: 293 --IRMQQLHAAHHPRA 306


>gi|238028907|ref|YP_002913138.1| site-specific tyrosine recombinase XerC [Burkholderia glumae BGR1]
 gi|237878101|gb|ACR30434.1| Site-specific recombinase XerC [Burkholderia glumae BGR1]
          Length = 306

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 86/321 (26%), Positives = 158/321 (49%), Gaps = 29/321 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +    +L  L+  R LS  TL+ Y  +      F         + + +  L+  ++R+ +
Sbjct: 4   EPIAAYLSYLQHVRQLSAHTLRGYAHELAALTAF--------ASGRPLASLTAADMRSAV 55

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++     +  RS+   LS  ++F ++  +R     + +  +R  K++ +LP+AL+   A 
Sbjct: 56  ARAHAGGLSARSIAHRLSAWRAFYRWYAQRVEMPANPVATVRAPKRARALPKALSVDDAN 115

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP-----------QNIMDD 184
           TL+++    T         R+ AI+ L Y  GLR++E + L               +   
Sbjct: 116 TLMESAFPDTPE-----GLRDRAIVELFYSSGLRLAELVGLDVHYVNADGYRSAGWLDRG 170

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           ++ L + GKG K R VP+     +A+  +  +    +  +   PLF  +RG  + PGV +
Sbjct: 171 EAELSVLGKGGKERKVPVGRKALEALDAWLAVREGWVRGDPH-PLFLSVRGNRMAPGVVR 229

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +++  R  G+P +   H LRHSFATH+L + GDLR++Q +LGH  +S TQ+YT+++ +
Sbjct: 230 ERVKRAARVAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQ 289

Query: 305 NGGDWMMEIYDQTHPSITQKD 325
           +    +  IYD  HP   ++D
Sbjct: 290 H----LARIYDSAHPRAKKRD 306


>gi|237797828|ref|ZP_04586289.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331020678|gb|EGI00735.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 290

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 89/301 (29%), Positives = 146/301 (48%), Gaps = 17/301 (5%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           +L  ER +S  TL++Y  D  + L +      +K  + +  +L    +R+F +++  Q  
Sbjct: 2   HLRSERQVSPHTLEAYRRDLGKVLAYC-----QKAQLSSWNELDIQHLRSFTARQHQQGQ 56

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
             RSL R LS ++ F KYL +  I        +   K    LP+ L+  +   L+D  + 
Sbjct: 57  SSRSLARMLSAVRGFYKYLNREAICAHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGV- 115

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
               E  ++  R+ AIL L Y  GLR+SE   L    +      +++ GKG K R++P+ 
Sbjct: 116 ----EDDFLAHRDHAILELFYSSGLRLSELTGLNLDQLDLSDGLIQVLGKGSKTRVLPVG 171

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              R+A+  +  L    L       +F   +GK L P   Q  ++       L  +   H
Sbjct: 172 SKARRALETWLPLR--ALANPQDDAVFVTRQGKRLGPRAVQVRLKAAGER-ELGQNLHPH 228

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +YD  HP   +
Sbjct: 229 MLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDNAHPRAKR 284

Query: 324 K 324
           K
Sbjct: 285 K 285


>gi|91785030|ref|YP_560236.1| site-specific tyrosine recombinase XerD [Burkholderia xenovorans
           LB400]
 gi|91688984|gb|ABE32184.1| Putative phage integrase/recombinase family protein [Burkholderia
           xenovorans LB400]
          Length = 311

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 137/304 (45%), Gaps = 17/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +   L +E GLS+ TL +Y  D R F  +LA          ++   S  ++ A+ + 
Sbjct: 23  IDAFCDALWLEHGLSRNTLDAYRRDLRLFCEWLAQSRN-----ASLDTASEADLNAYSAA 77

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  QK    S  R LS  + +  +  +         + +R+ K+    P  L E Q   L
Sbjct: 78  R--QKDKSTSANRRLSVFRRYYGWAVREHRAKVDPTVRIRSAKQPPRFPSTLTEAQVEAL 135

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +             +  R+  +L L+Y  GLR++E ++L    +  ++  +R+ GKG K 
Sbjct: 136 L-----GAPDVDTPLGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKE 190

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R++P        I  Y     P  L       LF   R + +    F   I++     G+
Sbjct: 191 RLIPFGEEAHGWIERYLREARPALLGARATDALFVTGRAEGMTRQQFWNIIKRHAAAAGV 250

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++ Q
Sbjct: 251 NAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARER----LKSLHAQ 306

Query: 317 THPS 320
            HP 
Sbjct: 307 HHPR 310


>gi|326384761|ref|ZP_08206438.1| site-specific tyrosine recombinase XerD [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326196569|gb|EGD53766.1| site-specific tyrosine recombinase XerD [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 307

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 92/314 (29%), Positives = 145/314 (46%), Gaps = 20/314 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                +L +L +ERG +  T+ SY  D  ++  FLA        + T+ +++  ++RAF+
Sbjct: 7   DAIARYLDHLTVERGSATNTVASYRRDLLRYNTFLAGR-----GVTTMSEVTEDDVRAFL 61

Query: 76  SKRRTQ-------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
              R          + D S+ R+L   + F K+     +T      ++R  K    LP++
Sbjct: 62  VALRRGDPERGVPGLADSSVARTLVAARGFHKFCAAEGLTATDVAHSVRPPKPPRRLPKS 121

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L     L ++D               R+ A++ LLY CG RISE  SL   ++  +   +
Sbjct: 122 LPIDDVLAILD----AAGAVDGPRGLRDRALVELLYSCGARISEVTSLDLDDLDLEHRAV 177

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            ++GKG K RIVP+     +A+  Y       L       LF  IRG  L+     + + 
Sbjct: 178 VLRGKGGKERIVPVGGPAIEAVDAYLVRGRPALVKKSTPALFLNIRGGRLSRQSAWQVLV 237

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                 G+    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQ+YT V      +
Sbjct: 238 DAAERAGVDKEVSPHTLRHSFATHLLDGGADVRVVQELLGHSSVTTTQVYTLVT----VN 293

Query: 309 WMMEIYDQTHPSIT 322
            M E+Y  +HP   
Sbjct: 294 TMREVYATSHPRAR 307


>gi|332686606|ref|YP_004456380.1| site-specific tyrosine recombinase [Melissococcus plutonius ATCC
           35311]
 gi|332370615|dbj|BAK21571.1| site-specific tyrosine recombinase [Melissococcus plutonius ATCC
           35311]
          Length = 299

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 97/324 (29%), Positives = 154/324 (47%), Gaps = 28/324 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ME  N PE+           +L+ L +ERG S+ T  +Y+ D   +  FL     ++   
Sbjct: 1   MENTNWPEL-----------FLRYLIVERGYSQKTKLAYQEDLSHYFQFL-----KESGN 44

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
                + + ++R ++S          ++ R ++ ++SF ++L K +   E+    +   K
Sbjct: 45  TDYLTIDHLDVRVYLSFLYENNYSRSTISRKIASLRSFYQFLLKNERIQENPFSYVHMKK 104

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K   LP    EK+   L D+   +T      +D RN A+L +LYG G+R+ E ++LT + 
Sbjct: 105 KQQRLPLFFYEKEMALLFDSTTGNTP-----LDYRNRALLEVLYGTGIRVGECINLTMEA 159

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKP 237
           I  D S L + GKG+K R +P       A+ EY+      L    Q     +F    G  
Sbjct: 160 IDFDTSVLFVHGKGNKDRYIPFGSFANDALKEYFHKGRDILMNKYQKQHKYVFVNHYGDQ 219

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L     +  + QL R   L      H LRH+FATHLL+NG D+R++Q +LGH  LSTTQI
Sbjct: 220 LTSAGIEYILNQLIRKSSLNTEIHPHMLRHTFATHLLNNGADMRTVQELLGHENLSTTQI 279

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSI 321
           Y +V  ++    + + Y   HP  
Sbjct: 280 YAHVTKES----LQKNYRTFHPRA 299


>gi|86283512|gb|ABC92575.1| tyrosine site-specific integrase/recombinase protein [Rhizobium
           etli CFN 42]
          Length = 383

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 91/318 (28%), Positives = 145/318 (45%), Gaps = 18/318 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             +++L+ +  ERG +  TLQSYE D      FL   +        + + +  ++ A+++
Sbjct: 74  HVESFLEMMSAERGAAANTLQSYERDLDDVRSFLNGRSIR------LTEAASADLAAYLA 127

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               Q     S  R L+ ++ F K+L    + T+     +   KK   LP+ +  ++   
Sbjct: 128 SLARQGFKPSSQARRLAAMRQFYKFLYAEGLRTDDPTGVLDAPKKGRPLPKTMGVEEVGR 187

Query: 137 LVDNVLLHTSHETKWIDARNS--AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           L+                R    A+L LLY  G+R+SE +SL  + +  +   L I+GKG
Sbjct: 188 LLSQAQTEADDPAPGQLQRRRMLALLELLYATGMRVSELVSLPARVLDQEGRFLMIRGKG 247

Query: 195 DKIRIVPLLPSVRKAILEY----YDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQ 249
           +K R+VPL  S   A+  Y                   LF    +   L   VF R ++ 
Sbjct: 248 NKERLVPLSHSAIAALKSYGRLLAADAAAAKEPQESPWLFPAASKEGYLPRQVFARDLKN 307

Query: 250 LRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           L    GL  S  + H +RH+FA+HLL+NG DLR +Q +LGH  +STTQIYT+V  +    
Sbjct: 308 LAIRAGLTPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER--- 364

Query: 309 WMMEIYDQTHPSITQKDK 326
            + ++    HP   Q  K
Sbjct: 365 -LQQLVQMHHPLAKQAKK 381


>gi|56964041|ref|YP_175772.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16]
 gi|56910284|dbj|BAD64811.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16]
          Length = 300

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 90/306 (29%), Positives = 151/306 (49%), Gaps = 16/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +++ +++E+  SK T+  Y  D +QF  F++        I  I+ + + ++R FIS+
Sbjct: 9   IDQFVRYVQVEKNGSKWTIDHYRKDVQQFAAFMSA-----AGIAEIKDVKHQDVRLFISE 63

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +K   +S+ R LS ++SF K+L +    +E+  L+    K+   LP  L E++    
Sbjct: 64  LVDKKYARKSIARKLSALRSFGKFLMEEGHISENPFLHTHLPKQKTRLPTFLYEEEM--- 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            ++ LL      K ++ R+ AI+ LLY  G+R+SE   L          T+R+ GKG K 
Sbjct: 121 -EHWLLALPA-NKPLEKRDKAIIELLYATGMRVSECSMLALDQWDRVSETVRVFGKGRKE 178

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R VP+      A+  Y       L    +    LF   RG  L+    ++ + +      
Sbjct: 179 RYVPVGKMAVSAVESYIHEARPKLLRANDPTSHLFLNYRGGALSDRSIRKIVEKRLDEAA 238

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + H +RHSFATHLL+ G DLR++Q +LGH  L TTQ+YT+V+ +     +  +Y 
Sbjct: 239 MQKKISPHAIRHSFATHLLNAGADLRAVQELLGHQSLKTTQVYTHVSKER----LYAVYK 294

Query: 316 QTHPSI 321
             HP  
Sbjct: 295 GAHPRA 300


>gi|221201912|ref|ZP_03574949.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2M]
 gi|221207582|ref|ZP_03580590.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2]
 gi|221215807|ref|ZP_03588766.1| tyrosine recombinase XerC [Burkholderia multivorans CGD1]
 gi|221164343|gb|EED96830.1| tyrosine recombinase XerC [Burkholderia multivorans CGD1]
 gi|221172428|gb|EEE04867.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2]
 gi|221178332|gb|EEE10742.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2M]
          Length = 306

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 89/321 (27%), Positives = 158/321 (49%), Gaps = 29/321 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                +L NL+  R LS+ TL++Y  +  +     A         + +  L   +IR  +
Sbjct: 4   DPIAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAG--------RPLDTLVAADIRGAV 55

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++     +  RS+   LS  ++F ++L +R     + +  +R  K+  +LP+AL+   A 
Sbjct: 56  ARAHAGGLSARSISHRLSAWRAFYRWLAQRVEMPANPVAAVRAPKRPKTLPKALSVDDAS 115

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-----------MDD 184
            L+D  L  T+        R+ AIL L Y  GLR++E + L                   
Sbjct: 116 ALMDAPLADTTE-----GIRDHAILELFYSSGLRLAELIGLDVAYTQTGDYRSAGWLDLA 170

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           ++ + ++GKG+K R VP+      A+  +  +    +  +   PLF  +RG  ++PGV +
Sbjct: 171 EAEVTVRGKGNKERKVPVGRKAIDALNAWLAVRGEFVKHDPH-PLFLSVRGNRMSPGVVR 229

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +++     G+P     H LRHSFATH+L + GDLR++Q +LGH  +S TQ+YT+++ +
Sbjct: 230 ERVKRAALAAGIPAHVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYTSLDFQ 289

Query: 305 NGGDWMMEIYDQTHPSITQKD 325
           +    + +IYD  HP   ++D
Sbjct: 290 H----LAKIYDSAHPRAKKRD 306


>gi|171320566|ref|ZP_02909590.1| tyrosine recombinase XerC [Burkholderia ambifaria MEX-5]
 gi|171094193|gb|EDT39276.1| tyrosine recombinase XerC [Burkholderia ambifaria MEX-5]
          Length = 306

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 87/321 (27%), Positives = 160/321 (49%), Gaps = 29/321 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                +L NL+  R LS+ TL++Y  +  +     A         + +  L+  ++R  +
Sbjct: 4   DPIAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAG--------RPLDALTAVDMRGAV 55

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++     +  RS+   LS  ++F ++L +R     + +  +R  K+  +LP+AL+   A 
Sbjct: 56  ARAHAGGLSARSIAHRLSAWRAFYRWLAQRIEMPANPVAAVRAPKRPKTLPKALSVDDAS 115

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP-----------QNIMDD 184
            L+D  L  T+        R+ AIL L Y  GLR++E + L               +   
Sbjct: 116 ALMDAPLAGTTE-----GIRDHAILELFYSSGLRLAELVGLDVMYTQADGYRSAGWLDLA 170

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           ++ + ++GKG+K R VP+      A+  +  +    +  +   PLF  +RG  + PGV +
Sbjct: 171 EAEVTVRGKGNKERKVPVGRKAIDALNAWLAVRGEFVKHDPH-PLFVSVRGNRMAPGVVR 229

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  ++ TQ+YT+++ +
Sbjct: 230 DRVKRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYTSLDFQ 289

Query: 305 NGGDWMMEIYDQTHPSITQKD 325
           +    + +IYD  HP   ++D
Sbjct: 290 H----LAKIYDSAHPRAKKRD 306


>gi|119776379|ref|YP_929119.1| integrase/recombinase XerC [Shewanella amazonensis SB2B]
 gi|171704602|sp|A1SAP3|XERC_SHEAM RecName: Full=Tyrosine recombinase xerC
 gi|119768879|gb|ABM01450.1| integrase/recombinase XerC [Shewanella amazonensis SB2B]
          Length = 296

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 86/313 (27%), Positives = 154/313 (49%), Gaps = 20/313 (6%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            +     + + + L  ER LS +T+++Y  +  +    L          ++ +QLS  ++
Sbjct: 2   ADQASWLERFTRYLATERQLSPMTVRNYRFELERADTLLGQ--------RSWQQLSRQDL 53

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
              +++   Q +  RSL  + S +K F ++L K  +   +    +   K+S +LP+ L+ 
Sbjct: 54  SGLMARLHRQGLSPRSLSLTASALKQFGQFLLKEGLIDTNPAATLSAPKQSKTLPKNLDP 113

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
                L+D            +  R+ AI+ L Y CGLR++E  +L  +++  +   +R+ 
Sbjct: 114 DSVNHLLDIP------PEDGLALRDKAIMELFYSCGLRLAELAALDVKDLDRESREVRVI 167

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG K RI+P+      AI ++  +            LF   RG  L+    Q  + +  
Sbjct: 168 GKGSKERILPVGSVALAAIGDWLKVRNQ--MPCQDDALFVSSRGSRLSHRSIQARMEKWA 225

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +  GL +    H LRHSFATH+L + GDLR++Q +LGH  L+TTQIYT+++ ++    + 
Sbjct: 226 QIQGLSVGVHPHKLRHSFATHMLESSGDLRAVQELLGHANLATTQIYTSLDFQH----LA 281

Query: 312 EIYDQTHPSITQK 324
           ++YD  HP   +K
Sbjct: 282 KVYDGAHPRARKK 294


>gi|300313582|ref|YP_003777674.1| site-specific integrase/recombinase [Herbaspirillum seropedicae
           SmR1]
 gi|300076367|gb|ADJ65766.1| site-specific integrase/recombinase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 330

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 90/322 (27%), Positives = 153/322 (47%), Gaps = 20/322 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L  +R LS  T++ Y  D ++    LA   EE   I  +R+ +  +IR   ++  
Sbjct: 15  QYLSFLRTQRKLSDHTVEHYGRDLQELRSLLAPAGEEHADI-DLRKTTQVQIRKCAARLH 73

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +  RS+ R LS  + F  +L  +     + +  ++  KKS  LP+AL    A+ LV 
Sbjct: 74  ARGLNARSIARKLSAWRGFFGWLSMQMDLAANPVDGVKAPKKSKPLPKALAADDAIRLVS 133

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-----------MDDQSTL 188
                       + A N A+  LLY  GLR+SE + +   ++             +++ +
Sbjct: 134 QPDP-VRDPDSTLAACNRAMFELLYSSGLRVSELVGIDVADVREGGYESAGWVDLEEAEV 192

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN---IQLPLFRGIRGKPLNPGVFQR 245
            + GKG K R VP+  + R A+ ++  L       +       LF   RG  ++P V Q 
Sbjct: 193 TVTGKGGKKRKVPVGQAARAALADWLPLRARLRKADGGPDSHALFLNERGARISPRVAQL 252

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            ++   R L +      H LRHSFA+H+L + GDLR++Q +LGH  ++ TQ+YT ++ + 
Sbjct: 253 RLKAHGRALEMASDVHPHMLRHSFASHVLQSSGDLRAVQEMLGHASITATQVYTALDFQR 312

Query: 306 GGDWMMEIYDQTHPSITQKDKK 327
               + ++YDQ HP   +   K
Sbjct: 313 ----LAQVYDQAHPRARKNGGK 330


>gi|325141563|gb|EGC64029.1| tyrosine recombinase XerC [Neisseria meningitidis 961-5945]
 gi|325197634|gb|ADY93090.1| tyrosine recombinase XerC [Neisseria meningitidis G2136]
          Length = 305

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 85/313 (27%), Positives = 148/313 (47%), Gaps = 13/313 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
                  +L+N+  E G S+ T+ +Y  D  +    LA    E       + LS  +  A
Sbjct: 6   FAAHFDAYLENIVRE-GKSEHTVAAYRRDLEELFALLAQMPSEDAG-GVPQDLSRRDFTA 63

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            + +   + +  R+L R LS  + +  +L +R +       +++  K+   +P+AL+++ 
Sbjct: 64  ALRRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALSQEW 123

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++D  +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GK
Sbjct: 124 LNRMLDLPV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGK 179

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R VPL     +A+  Y  L     +      LF G  G  L+    Q+ + Q    
Sbjct: 180 GRKQRQVPLTGKSVEALKNYLPLRQTASDGK---ALFTGRNGTRLSQRQIQKRLAQWAAQ 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G     + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +
Sbjct: 237 NGDGRHVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARL 292

Query: 314 YDQTHPSITQKDK 326
           YD+ HP   ++D+
Sbjct: 293 YDEAHPRAKRQDE 305


>gi|260173069|ref|ZP_05759481.1| integrase [Bacteroides sp. D2]
 gi|315921346|ref|ZP_07917586.1| integrase [Bacteroides sp. D2]
 gi|313695221|gb|EFS32056.1| integrase [Bacteroides sp. D2]
          Length = 319

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 88/312 (28%), Positives = 148/312 (47%), Gaps = 17/312 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + Q L++E+ LS  TL +Y  D  + + FL            +  +  ++++ F + 
Sbjct: 17  IRKYQQYLKLEKSLSLNTLDAYLTDLDKLMSFLTLEGI------NVLDVCLSDLQRFAAG 70

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I  RS  R LSGIKSF ++L             +   K    LP  L  ++   +
Sbjct: 71  LHDIGIHPRSQARILSGIKSFFRFLILENYLEADPSELLEGPKIGFKLPEVLTVEEIDRI 130

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +          +K    RN AIL  LY CGLR+SE ++L   ++  D+  ++++GKG K 
Sbjct: 131 I-----SAVDRSKAEGQRNRAILETLYSCGLRVSELITLKLSDLYFDEGFIKVEGKGSKQ 185

Query: 198 RIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLG 255
           R+VP+ P     I  Y       ++    +  +F   R    L+  +    I++L +  G
Sbjct: 186 RLVPISPRAINEIKLYITDRNQIEVKKGHEDFVFVSQRRGKGLSRIMIFHMIKELAQKAG 245

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++       ++E   
Sbjct: 246 ITKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIE--- 302

Query: 316 QTHPSITQKDKK 327
             HP   +  K+
Sbjct: 303 -HHPRNIKYRKE 313


>gi|259046879|ref|ZP_05737280.1| integrase/recombinase XerD [Granulicatella adiacens ATCC 49175]
 gi|259036502|gb|EEW37757.1| integrase/recombinase XerD [Granulicatella adiacens ATCC 49175]
          Length = 294

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 93/308 (30%), Positives = 156/308 (50%), Gaps = 17/308 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +KE   +L ++ ++ GLS  T+ SY  D  +F  FL     E+  +  ++ + +T +  F
Sbjct: 1   MKEIHYFLDSIAVQ-GLSDNTVSSYRRDLEKFSQFL-----EEQKVIRLQNVDHTTMVLF 54

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + K +  +    S  R +S +K F ++L + +I  +     +   K    LP+AL+  + 
Sbjct: 55  LQKLKKDEYAVSSTSRMISCLKKFFQFLIQERIIDKDPTQQIHPPKPKKQLPKALSIDEV 114

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L++         T  +  R+ A+L LLY  G+R+SE +S+   ++  +   L+  GKG
Sbjct: 115 NRLLE-----VPDTTTVLGLRDKAMLELLYATGMRVSELISIELGDLHLELGFLQTIGKG 169

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRR 252
           +K RI+P+       I  Y +     L    +L   LF   RG P     F + ++++ +
Sbjct: 170 NKQRIIPIGQEATNWIQNYLEYARPALEDEKKLSNVLFLNHRGGPFTRQGFWKNLKKIVQ 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +    + HTLRHSFATH+L  G DLR +Q +LGH  +STTQIYT++ ++     M E
Sbjct: 230 TAMITKEVSPHTLRHSFATHILEAGADLRIVQELLGHSDISTTQIYTHITNER----MKE 285

Query: 313 IYDQTHPS 320
           IY Q HP 
Sbjct: 286 IYKQAHPR 293


>gi|293374710|ref|ZP_06621018.1| tyrosine recombinase XerC [Turicibacter sanguinis PC909]
 gi|325840598|ref|ZP_08167079.1| tyrosine recombinase XerC [Turicibacter sp. HGF1]
 gi|292646624|gb|EFF64626.1| tyrosine recombinase XerC [Turicibacter sanguinis PC909]
 gi|325490247|gb|EGC92580.1| tyrosine recombinase XerC [Turicibacter sp. HGF1]
          Length = 301

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 91/310 (29%), Positives = 157/310 (50%), Gaps = 18/310 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            ++  L+ E+  S+ TL +YE D +++  F       +       +  Y+++R++++   
Sbjct: 7   KYMDYLKYEKRYSEHTLLNYERDVKEWFSFCQREGINEF------EFDYSDVRSYLNDCY 60

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           T ++   ++ R LS ++S+ ++L K K   ++  L M+  KK+ +LP+ L E++   L D
Sbjct: 61  THQLSRSTMSRKLSSLRSYYQFLLKEKQVKQNPFLIMKGPKKAETLPQFLYEEELQALFD 120

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           ++      +T  +  RN A+L LLYG G+R+SE   +    +  +  T+ I GKG K R 
Sbjct: 121 SI-----DQTSILGCRNYALLELLYGTGIRVSECCQMKQSQLNVELGTVLIHGKGGKDRY 175

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNI---QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           VP+     +AI  Y       L          LF    G PL     +  + ++      
Sbjct: 176 VPIGEFAVEAIEAYLQRSRPQLLKKSNLETDVLFLNHLGTPLTERGVRDILSRMTNQTAK 235

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            +    H +RH+FATHLL+NG DLRS+Q +LGH  LS+TQIYT+V+ ++    + + Y  
Sbjct: 236 HIKVAPHMIRHTFATHLLNNGADLRSVQELLGHENLSSTQIYTHVSKEH----LRQAYAL 291

Query: 317 THPSITQKDK 326
            HP   +  K
Sbjct: 292 AHPRARKDRK 301


>gi|15603566|ref|NP_246640.1| site-specific tyrosine recombinase XerC [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|34223005|sp|Q9CKC2|XERC_PASMU RecName: Full=Tyrosine recombinase xerC
 gi|12722110|gb|AAK03785.1| XerC [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 295

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 94/312 (30%), Positives = 153/312 (49%), Gaps = 17/312 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++   +   L IER +S  TL +Y+    + +  LA     +  I + + ++ + +R 
Sbjct: 1   MQEQLDKYWNYLRIERQVSPHTLTNYQRQLYRIVDILA-----ENGITSWQAVTPSIVRF 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            +++     + +RSL   LS ++ F  YL +++    +    +   K++  LP+ ++ +Q
Sbjct: 56  ILAQSNKDGLKERSLALRLSVLRRFFTYLVQQQDINVNPATGVSAPKQNRHLPKNIDAEQ 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++N         + ID R+ AIL LLY  GLR+SE  SL   +I      +R+ GK
Sbjct: 116 VQQLLNN------DSKEPIDIRDRAILELLYSSGLRLSELQSLNLNSINTRVREVRVMGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K RIVP       AI ++  +    L       LF    G  L     Q+ +      
Sbjct: 170 GNKERIVPFGRYASHAIQQWLKVRI--LFNPKDEALFVSQLGNRLTHRAIQQRLEVWGIK 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL      H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    + E+
Sbjct: 228 QGLSSHLNPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEV 283

Query: 314 YDQTHPSITQKD 325
           YD  HP   +K 
Sbjct: 284 YDSAHPRAKRKK 295


>gi|119356400|ref|YP_911044.1| tyrosine recombinase XerC subunit [Chlorobium phaeobacteroides DSM
           266]
 gi|119353749|gb|ABL64620.1| tyrosine recombinase XerC subunit [Chlorobium phaeobacteroides DSM
           266]
          Length = 328

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 93/314 (29%), Positives = 163/314 (51%), Gaps = 12/314 (3%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQTIRQLSYTEIRAF 74
           +E + +L  L+  + +S+ T+ +Y  D  QF  F+  + E + +++    Q++   +R F
Sbjct: 19  REAERFLGYLKTSKNVSRHTITAYRNDLDQFFSFMQRHLELQHMSLFDPEQVTVASVRLF 78

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +     + +  +S+ R L+ +KSF +YL++  +   S +  +   +    +P  L E+Q 
Sbjct: 79  MGDLLQRGLQPKSIARKLASVKSFYRYLQETGVIKSSVLSLVSTPRYPRHVPGFLTEQQT 138

Query: 135 LTLVDNVLLHT-SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
             + +         +  +   R+ ++L +LYGCGLRISE + L P +I   Q  ++I GK
Sbjct: 139 EKIFEQEDSGLFGSDDTFEFHRDISVLEMLYGCGLRISELIDLCPDDINFLQGYVKITGK 198

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL------PLFRGIRGKPLNPGVFQRYI 247
           G K RIVPL     +A+ +Y+++      +N  +       +F   RGK L P + QR  
Sbjct: 199 GQKQRIVPLGTQAAEAVRKYFEVRRNFFRINKLMDEKELNHVFVTKRGKKLYPMLVQRIT 258

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++    +        H LRH+FATHLL+NG DL+S+  +LGH  L+TT+IYT+V      
Sbjct: 259 KKYLMSVTEQKEKNPHLLRHTFATHLLNNGADLKSVSEMLGHSSLATTEIYTHVTF---- 314

Query: 308 DWMMEIYDQTHPSI 321
             + E+Y + HP  
Sbjct: 315 GRLKEVYRKAHPKA 328


>gi|300024727|ref|YP_003757338.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526548|gb|ADJ25017.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888]
          Length = 327

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 130/312 (41%), Positives = 186/312 (59%), Gaps = 10/312 (3%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L +  ++WL +L  ERG S  T ++Y  D  QFL FL  +      +  + ++     R
Sbjct: 24  DLKRAVEDWLAHLINERGQSAATREAYARDVTQFLAFLKTHLGRAPCLGDLSRVDTKVFR 83

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           AF++ RR   +  RSL RSLS +++F ++L++        +L +   K  +S+P+ L   
Sbjct: 84  AFLAHRRKSDVVSRSLARSLSSLRTFFRWLEREGRLQNRAVLQVALPKIPHSVPKPLTVD 143

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQ 191
            A  LV           +WI+AR++A+L LLYG GLRISEALSLTP +  ++ +  + I 
Sbjct: 144 GAAELV---ATKNDDRAEWINARDTAVLLLLYGAGLRISEALSLTPNSAPLNGRDVMHIT 200

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG K R+VP LP + +AI +Y  LCPF L+ +   PLF G RG PL+P + Q  + ++R
Sbjct: 201 GKGGKDRLVPALPIISEAIAKYMRLCPFPLSGD--GPLFLGARGGPLSPRLIQLAMARMR 258

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R LGLP + T H LRHSFATHLLS G DLR IQ +LGH  LSTTQ+YT V+     D ++
Sbjct: 259 RELGLPETATPHALRHSFATHLLSAGADLRQIQELLGHASLSTTQVYTEVD----RDRLL 314

Query: 312 EIYDQTHPSITQ 323
            +YDQ HP   +
Sbjct: 315 SVYDQAHPRTAR 326


>gi|312797553|ref|YP_004030475.1| integrase/recombinase (XerC/CodV family) [Burkholderia rhizoxinica
           HKI 454]
 gi|312169328|emb|CBW76331.1| Integrase/recombinase (XerC/CodV family) [Burkholderia rhizoxinica
           HKI 454]
          Length = 312

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 92/321 (28%), Positives = 157/321 (48%), Gaps = 29/321 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                +L +L  ER LS  TL+ Y  +             +    + + QL+  ++R  +
Sbjct: 6   DPIARYLDSLAHERRLSAHTLRGYAHELDML--------RQLAGTRELTQLTPVDVRGAV 57

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           S+  +  +  RS+   LS  +SF ++L   +  T + +  +R  K++ +LP+AL+   A+
Sbjct: 58  SRAHSGGLSPRSIAHRLSVWRSFYRWLALHQPLTMNPVAGVRAPKRAKTLPKALSVDDAV 117

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT-----------PQNIMDD 184
           TL++   + T         R+ A+L L Y CGLR++E + L               I   
Sbjct: 118 TLMEASCIETPD-----ALRDRAMLELFYSCGLRLAELIGLDIAFVNTAQYRSVGWIDLG 172

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
            + + + GKG K R VP+      A+  +  +    L  +   PLF   RG  ++ GV +
Sbjct: 173 TADVTVLGKGGKRRTVPIGSKALDALHRWLAVRDQLLKHDPH-PLFLSARGMRMSAGVVR 231

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +R+     G+P     H LRHSFATHLL + GDLR++Q +LGH  ++ TQ+YT+++ +
Sbjct: 232 ERVRRAALAAGVPSHVHPHVLRHSFATHLLQSSGDLRAVQELLGHASVAATQVYTSLDFQ 291

Query: 305 NGGDWMMEIYDQTHPSITQKD 325
           +    +  IYDQ HP   ++D
Sbjct: 292 H----LARIYDQAHPRAKKRD 308


>gi|187477407|ref|YP_785431.1| site-specific tyrosine recombinase XerD [Bordetella avium 197N]
 gi|115421993|emb|CAJ48515.1| tyrosine recombinase [Bordetella avium 197N]
          Length = 314

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 81/320 (25%), Positives = 146/320 (45%), Gaps = 16/320 (5%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           + +P+ +  +   +   ++  L +E GL+  TL +Y  D   F  +L    +       +
Sbjct: 9   SAMPDPLLAQ--ADIDAFIDALWLEDGLAANTLAAYRRDLSAFARWLQQTGQAASG--QL 64

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
            + S  +I A+ +          +  R L+ ++ F  +  + K T     L +   ++  
Sbjct: 65  CEASGGDIEAWFAVLHQDSR-PATANRRLATLRRFYAWALREKRTGTDPCLKLAAARQPL 123

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            +P+ L+E Q   L+    L T         R+ A+L  LY  GLR+SE + L   ++  
Sbjct: 124 RVPKTLSEAQVEALLGAPDLGTPR-----GLRDRAMLETLYATGLRVSELVELQTLDVSL 178

Query: 184 DQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPG 241
               +R+ QGKG K R+VP+       +  Y +   P  +       LF   R + ++  
Sbjct: 179 SDGVVRVVQGKGGKDRLVPMGAEAAHWLQRYLNQARPVLVGARQSDALFVTGRAQAMSRQ 238

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            F + +++  +   +    + H LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V
Sbjct: 239 AFWQLVKKYAQRADVHAPLSPHVLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHV 298

Query: 302 NSKNGGDWMMEIYDQTHPSI 321
             +     +  ++   HP  
Sbjct: 299 ARER----LKALHAAHHPRA 314


>gi|240948880|ref|ZP_04753236.1| site-specific tyrosine recombinase XerC [Actinobacillus minor
           NM305]
 gi|240296695|gb|EER47306.1| site-specific tyrosine recombinase XerC [Actinobacillus minor
           NM305]
          Length = 300

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 87/316 (27%), Positives = 153/316 (48%), Gaps = 17/316 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +   L  + Q +   L  E+ +S  TL +Y+   +     L         I + +++  +
Sbjct: 1   MDNTLYTQIQPYWDYLRAEKQVSPHTLSNYQRQLQAVCAMLKQQQ-----ISSWQEVDAS 55

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            IR  +S+   Q +G +S+   L  ++ +  YL K +    +  L ++  K    LP+ +
Sbjct: 56  VIRWILSQSHKQGLGAKSIGVRLVALRQWFAYLVKNEQLQANPALGIKAPKVGRHLPKNV 115

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           + +Q   L++      +  TK ++ R+ A++ L+Y  GLR+SE   L    +      +R
Sbjct: 116 DAEQVAQLLN------TEATKPLEIRDLAMMELMYSSGLRLSELQGLDLDRMDLSTREVR 169

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG+K RIVP+     +AI  + ++            +F   RG  L+    Q  + +
Sbjct: 170 LLGKGNKERIVPIGSKALEAIHRWLEVRMR--FNPQDNAVFLNNRGGRLSHRSIQLIMEK 227

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             R  GL      H LRHSFATH+L   GDLR++Q +LGH  L+TTQIYT+++ ++    
Sbjct: 228 WGRKQGLETHLHPHKLRHSFATHMLEGSGDLRAVQELLGHSSLATTQIYTHLDFQH---- 283

Query: 310 MMEIYDQTHPSITQKD 325
           + ++YD  HP   +K 
Sbjct: 284 LAKVYDAAHPRARKKK 299


>gi|294625207|ref|ZP_06703848.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292600481|gb|EFF44577.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
          Length = 323

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 91/326 (27%), Positives = 148/326 (45%), Gaps = 24/326 (7%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
             +LP +   +     + +L     E+G+++ TL+SY  D      +        + I  
Sbjct: 13  ARHLPPVQPAD-ASVIERFLDRFWAEQGVARQTLESYRRDLEGLARWRDGAGGGLLGI-- 69

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
                   +  ++  R       RS  R LS +++F     +  + ++     +   +  
Sbjct: 70  ----DRAVLFDYLRWRTRANYSPRSTARLLSTLRAFYGLCLRDGVRSDDPTALIDPPQLP 125

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            SLP+AL E Q   L     L           R+ A+L L+Y  GLR+SE ++L    + 
Sbjct: 126 RSLPKALTESQIEAL-----LAAPDLDTLAGLRDRAMLELMYAAGLRVSELVNLPAVGVN 180

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-------QLPLFRGIRG 235
             Q  LR+ GKG K R+VPL    +  +  Y       L  N        Q+PLF  +  
Sbjct: 181 LRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARPLLAANKPVTAVDGQVPLFIDVSR 240

Query: 236 KPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           +PL+   F   +++     G+ P + + H LRHSFATHLL++G DLR++Q +LGH  LST
Sbjct: 241 QPLSRQQFWALVKRYAAAAGIDPATVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLST 300

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPS 320
           TQIYT V  ++    + +++   HP 
Sbjct: 301 TQIYTLVARQH----LQKLHASHHPR 322


>gi|332638608|ref|ZP_08417471.1| integrase/recombinase [Weissella cibaria KACC 11862]
          Length = 305

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 92/306 (30%), Positives = 146/306 (47%), Gaps = 13/306 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +ER  S+ T ++Y+ D  +F+ FL    + K     +  +   + R F+S    
Sbjct: 10  FLDYLRVERQYSEDTQKAYQSDITEFVAFLTDSGDGK--PVDLTTIDQYDARVFLSMLYE 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +    R++ R +S +++F ++L++  + T +    ++  K    LPR   EK+   L D 
Sbjct: 68  KGDVSRTIARKVSSLRAFYRFLERNAVVTTNPFAGVQLKKAGQHLPRYFYEKELNKLFDV 127

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           V+  TS               +LYG G R+SEA  LT   +      + I GKG+K RIV
Sbjct: 128 VMADTSLLGLRNRLLL----EILYGTGARVSEAAGLTLGMLDQAARVITITGKGNKTRIV 183

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNI---QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           P       A+  Y       L          LF   RG+ L     +  ++QL +  GL 
Sbjct: 184 PYGQYAADALASYLRDARPQLLAKSPVMHDKLFVNQRGQALTASGIEYILKQLAKKAGLT 243

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              +AH  RH++AT +L+NG DLR++Q +LGH  LSTTQIYT+V +    D + + Y   
Sbjct: 244 QMISAHMFRHTYATDMLNNGADLRTVQQLLGHSSLSTTQIYTHVTT----DALQKSYRDF 299

Query: 318 HPSITQ 323
            P  T+
Sbjct: 300 FPRATE 305


>gi|307942508|ref|ZP_07657856.1| tyrosine recombinase XerD [Roseibium sp. TrichSKD4]
 gi|307774147|gb|EFO33360.1| tyrosine recombinase XerD [Roseibium sp. TrichSKD4]
          Length = 307

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 89/313 (28%), Positives = 143/313 (45%), Gaps = 19/313 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L+ L  ERG ++ TLQSY  D   F  F A         Q    ++   I A++  
Sbjct: 7   IESFLEMLSAERGAAENTLQSYRRDLDDFAEFTA--------PQNPSAVNTDRISAYLRD 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +   + S  R LS +K + K+L    I T+     +   KK  +LP+ L+  +   L
Sbjct: 59  LSLRGFAETSQARRLSALKQYFKFLYADGIRTDDPTRTLSAPKKRQALPKVLSIDEVDKL 118

Query: 138 VDNVLLHTSHETKWIDARNSA-----ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +       + +      +  A     +L +LY  GLR+SE ++L       DQ  + + G
Sbjct: 119 IGEAQQAATKKQDSPAKQLRAQRLYTLLEVLYATGLRVSELVALPVTAAQRDQRLIEVTG 178

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLR 251
           KG K R+VPL P+ +KA+ +Y               LF    +        F R ++ L 
Sbjct: 179 KGGKERLVPLSPAAQKAMRDYIRQRAELGAYATSPWLFPSHGKSGHFTRQAFGRDLKDLA 238

Query: 252 RYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               +     + H LRH+FA+HLL NG DLR +Q +LGH  +STTQIYT+V  +     +
Sbjct: 239 VDTKIDTDKVSPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDER----L 294

Query: 311 MEIYDQTHPSITQ 323
            ++ +  HP   +
Sbjct: 295 TQLVESAHPLAKR 307


>gi|225388004|ref|ZP_03757728.1| hypothetical protein CLOSTASPAR_01737 [Clostridium asparagiforme
           DSM 15981]
 gi|225045926|gb|EEG56172.1| hypothetical protein CLOSTASPAR_01737 [Clostridium asparagiforme
           DSM 15981]
          Length = 283

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 136/294 (46%), Gaps = 12/294 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + + ++  LE E+  SK T+ SY+ D  Q   +L     E   I    +++ T + +
Sbjct: 1   MTADIKYFIGYLENEKKASKNTVISYQRDLVQLAAYL-----EAKGITEAEKVTKTSLNS 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +I     +     ++ R L+ IK+F  Y  +           ++  K     P  L   +
Sbjct: 56  YILYLEKEGKATTTISRELASIKAFFHYELREGRIRRDPAEFIKAPKVEKKAPVILTVNE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+         +    + R+ A+L LLY  G+R+SE +SL   ++      +  +  
Sbjct: 116 VNALLCQ-----PGDRTPKELRDKAMLELLYATGIRVSELISLKLTDVNMQVGYITCRD- 169

Query: 194 GDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
             K R+VP   + R+A+++Y  +     L       LF    G+ ++   F + I+Q   
Sbjct: 170 RSKERMVPFGKNARQALVQYMGEARTELLKGKNSDWLFTNCNGQAMSRQGFWKLIKQYGE 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
             G+    T HTLRHSFA HL+ +G D+ ++Q++LGH   +TTQIYTN  + +G
Sbjct: 230 KAGIKSDITPHTLRHSFAAHLIRSGADIHAVQAMLGHSDTATTQIYTNYTASSG 283


>gi|170718451|ref|YP_001783668.1| site-specific tyrosine recombinase XerC [Haemophilus somnus 2336]
 gi|189030077|sp|B0UWL5|XERC_HAES2 RecName: Full=Tyrosine recombinase xerC
 gi|168826580|gb|ACA31951.1| tyrosine recombinase XerC [Haemophilus somnus 2336]
          Length = 295

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 93/308 (30%), Positives = 160/308 (51%), Gaps = 17/308 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q +   L IER LS  TL +Y+    + ++ L     ++  I + +Q++ + +R  +++
Sbjct: 5   LQKYYNYLRIERQLSPYTLINYQRQLEKIVVIL-----QQNDIHSWQQVTPSVVRFVLAQ 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R + + +RSL   LS ++ FL YL  +     ++ + +   K+S  LP+ ++ +Q   L
Sbjct: 60  SRKEGLHERSLALRLSALRQFLNYLVVQGELKVNSAVGISAPKQSKYLPKNMDMEQVQQL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +      T+   + ID R+ A++ L+Y  GLR+SE  SL   +I      +R+ GKG+K 
Sbjct: 120 L------TNESKEPIDLRDKAMMELMYSSGLRLSELQSLNLNSINIRSREVRVIGKGNKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RI+P      +AI ++  +    L       LF    G  ++    Q+ +       GL 
Sbjct: 174 RILPFGRYASQAIQQWLKVR--LLFNPKDEALFVSQLGNRISHRSIQKRMETWGIRQGLN 231

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRHSFATH+L N  DLR++Q +LGH  LSTTQIYT+++ ++    + ++YD+ 
Sbjct: 232 GHLNPHKLRHSFATHMLENSSDLRAVQELLGHSNLSTTQIYTHLDFQH----LAQVYDKA 287

Query: 318 HPSITQKD 325
           HP   +K 
Sbjct: 288 HPRAKRKK 295


>gi|332976670|gb|EGK13510.1| integrase/recombinase XerD [Psychrobacter sp. 1501(2011)]
          Length = 312

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 84/296 (28%), Positives = 147/296 (49%), Gaps = 22/296 (7%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RGLS  T  +Y  D +           E    + +     T++   ++    Q    R+ 
Sbjct: 34  RGLSTRTRNAYVRDLKHC---------ETTNPKALTLWDDTDVMQCLTTLNKQGKTPRTQ 84

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R LS ++ F  ++   +   ++    ++  K   SLP+ L+E    +L     L     
Sbjct: 85  ARMLSSLRQFYLWMVGNERREDNPCERIKTPKIGRSLPKDLSENDVESL-----LSAPDT 139

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
           +  +  R+ A+L +LY CGLR+SE ++L+ + +  +   L+I GKG+K R+VPL     +
Sbjct: 140 STALGLRDKAMLEVLYACGLRVSELMNLSLEQVNLNAGWLQITGKGNKTRLVPLGEYASE 199

Query: 209 AILEYYDLCPFDLNLNIQL----PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           A+ +Y      +L  +++      +F   +G  +    F   I++  +  G+    + HT
Sbjct: 200 ALDDYLSHARGELVAHLKSGNCQAVFLTTQGGYMTRQNFWYMIKKYAKQAGIESDLSPHT 259

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           LRH+FATHLL++G DLRS+Q +LGH  LSTTQIYT+V +      + ++++  HP 
Sbjct: 260 LRHAFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHVATAR----LQQLHEAHHPR 311


>gi|332521441|ref|ZP_08397895.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
 gi|332042840|gb|EGI79039.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
          Length = 298

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 97/306 (31%), Positives = 154/306 (50%), Gaps = 16/306 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
              ++   L+IERGLS  ++ +Y  D ++ +  L    EE   + +   +    I+ FI 
Sbjct: 6   ALNDYKLYLKIERGLSNNSIDNYSFDVKKLIKHL----EENNIVSSPVNIQKQTIQEFI- 60

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              ++ I  RS  R +SG+K F  YL       ++ +  +   K    LP  L+E++   
Sbjct: 61  YAISKTINSRSQSRLISGLKGFFNYLVFEDYRFDNPLDTIDAPKIGRKLPDTLSEQEINN 120

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+  V L T    +     N  IL LLYGCGLR+SE   L   ++  D+  +++ GKGDK
Sbjct: 121 LISAVDLSTPQGER-----NRCILELLYGCGLRVSELTHLKISDLFFDEGYIKVTGKGDK 175

Query: 197 IRIVPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            R VP++P+ +K I  Y +       +    +  LF   RGK L   +    ++ L   +
Sbjct: 176 QRFVPIVPATQKFINIYRNEVRNHMVIPSEYKDTLFLNRRGKQLTRAMIFTIVKSLAIKI 235

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            L  + + HT RHSFATHLL NG DLR+IQ +LGH  ++TT+IY +V+  +    + ++ 
Sbjct: 236 NLGKTISPHTFRHSFATHLLENGADLRAIQLMLGHESITTTEIYMHVDKSH----LKDVM 291

Query: 315 DQTHPS 320
              HP 
Sbjct: 292 QSYHPR 297


>gi|239816431|ref|YP_002945341.1| tyrosine recombinase XerD [Variovorax paradoxus S110]
 gi|239803008|gb|ACS20075.1| tyrosine recombinase XerD [Variovorax paradoxus S110]
          Length = 303

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 85/312 (27%), Positives = 151/312 (48%), Gaps = 14/312 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            +     E  +++  L +E GLSK TL +Y  D   F  +L      + + + +     +
Sbjct: 4   AAATQTPEIDDFIDALWLEDGLSKNTLAAYRRDLALFAQWLGS----QRSGRALDTAQES 59

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +++A++  R + +    S  R L+  K + ++  + +       + +   ++     + L
Sbjct: 60  DLQAYMGARLSTRGKATSANRRLTVFKRYYRWALRERRIAADPSIRLAPARQMPRAIKTL 119

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +EKQ   L+             +  R+ A+L L+Y  GLR+SE ++L   ++  +   LR
Sbjct: 120 SEKQVDDLL-----AAPDVETPLGLRDRAMLELMYASGLRVSELVALKVIDMSLNDGVLR 174

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIR 248
           + GKG K R+VP     R+ I  Y D     +    Q P LF   RG  +   +F   ++
Sbjct: 175 VLGKGSKERLVPFGGEARRWIERYLDESRPTILDGQQTPDLFVTARGAGMTRVMFWIIVK 234

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     G+ +  + HTLRH+FATHLL+ G DLR++Q +LGH  +STT IYT+V  +    
Sbjct: 235 KQAAAAGIHVPLSPHTLRHAFATHLLNRGVDLRAVQLLLGHADISTTTIYTHVARER--- 291

Query: 309 WMMEIYDQTHPS 320
            + +++ Q HP 
Sbjct: 292 -LKQLHAQHHPR 302


>gi|257465111|ref|ZP_05629482.1| site-specific tyrosine recombinase XerC [Actinobacillus minor 202]
 gi|257450771|gb|EEV24814.1| site-specific tyrosine recombinase XerC [Actinobacillus minor 202]
          Length = 300

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 86/316 (27%), Positives = 153/316 (48%), Gaps = 17/316 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +   L  + Q +   L  E+ +S  TL +Y+   +     L  +      I + +++  +
Sbjct: 1   MDNTLYAQIQPYWDYLRAEKQVSPHTLSNYQRQLQAVCAMLKQHQ-----ISSWQEVDAS 55

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            IR  +S+   Q +G +S+   L  ++ +  YL K +    +  L ++  K    LP+ +
Sbjct: 56  VIRWILSQSHKQGLGAKSIGVRLVALRQWFAYLVKHEQLPANPALGIKAPKVGRHLPKNV 115

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           + +Q   L++      +  T  ++ R+ A++ L+Y  GLR+SE   L    +      +R
Sbjct: 116 DAEQVAQLLN------TEVTTPLEIRDLAMMELMYSSGLRLSELQGLDLDRMDLATREVR 169

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG+K RIVP+     +AI  + ++            +F   RG  L+    Q  + +
Sbjct: 170 LLGKGNKERIVPIGSKALEAIHRWLEVRM--SFNPQDNAVFLNNRGGRLSHRSIQLIMEK 227

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             R  GL      H LRHSFATH+L   GDLR++Q +LGH  L+TTQIYT+++ ++    
Sbjct: 228 WGRKQGLETHLHPHKLRHSFATHMLEGSGDLRAVQELLGHSSLATTQIYTHLDFQH---- 283

Query: 310 MMEIYDQTHPSITQKD 325
           + ++YD  HP   +K 
Sbjct: 284 LAKVYDAAHPRARKKK 299


>gi|300024678|ref|YP_003757289.1| tyrosine recombinase XerD [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526499|gb|ADJ24968.1| tyrosine recombinase XerD [Hyphomicrobium denitrificans ATCC 51888]
          Length = 309

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 82/310 (26%), Positives = 139/310 (44%), Gaps = 18/310 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L  ERG S  T+++Y  D   FL +L+  +   +++ T        I+ +I+   
Sbjct: 13  AFLDMLTAERGASPNTIEAYRGDLEGFLDYLSDGSVAPLSVGT------QNIQGYIAAMA 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  S  R LS IK + ++L    +        ++  KK  SLP+ L+  +   L+D
Sbjct: 67  NAGQAPTSRSRRLSAIKQYYRFLFAEGLIGADPTSGLQGPKKQRSLPKVLSIAEVDRLLD 126

Query: 140 NVLLHTSH---ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
                         +   R   +L LLY  G+R+SE + L    +  D+    I+GKG +
Sbjct: 127 ASQKRCEGVEGRAMFRALRFHCLLELLYATGMRVSELVGLPRTVLRGDKRVFSIKGKGGR 186

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRRYLG 255
            R+VPL    R A+  + ++       +    LF        +    F + ++ +    G
Sbjct: 187 ERLVPLNAEARAALDRFLEVSGR---FDNSPWLFPSKSASGHMTRQRFAQDLKDVAAEAG 243

Query: 256 LP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           +     + H LRH+FA+HLL  G DLR++Q +LGH  +STT+IYT+V  +     +  + 
Sbjct: 244 IGGDRISPHVLRHAFASHLLDRGADLRTVQQLLGHADISTTEIYTHVLQER----LKALV 299

Query: 315 DQTHPSITQK 324
           +  HP    K
Sbjct: 300 NTHHPLAKTK 309


>gi|300725867|ref|ZP_07059331.1| tyrosine recombinase XerD [Prevotella bryantii B14]
 gi|299776855|gb|EFI73401.1| tyrosine recombinase XerD [Prevotella bryantii B14]
          Length = 304

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 88/311 (28%), Positives = 148/311 (47%), Gaps = 16/311 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + + + L++E   S  TL++Y  D R  L F   + +  I  +        ++  F
Sbjct: 9   LNIVKQFDRYLKLECNYSANTLEAYRHDIRYLLEFFEEHQQNPIDAK------LEDLELF 62

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
            +    + IG RS  R LSG++SF ++L+      +     + +      LP  L  ++ 
Sbjct: 63  ATSIHEKGIGARSQARILSGVRSFYRFLQLEGYIKDDPTELLESPHLGEHLPTYLTTEEV 122

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L  ++ L     +KW   RN AI+ +L+ CGLR+SE ++L   N   D+  +R+ GKG
Sbjct: 123 DRLEASIDL-----SKWEGQRNKAIIEVLFSCGLRVSELVNLKISNCFMDEKFVRVLGKG 177

Query: 195 DKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            K R+VP+  +  + +  +        +    +  LF   RG  L   +    I++    
Sbjct: 178 SKERLVPISENAIREVNYWLMDRNLMVIKPGEEDYLFLNRRGSHLTRTMILIMIKRQAVA 237

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    + HTLRHSFAT LL  G DLR+IQ +LGH  + TT+IYT++ + +    ++E 
Sbjct: 238 AGITKIISPHTLRHSFATALLKGGADLRAIQVMLGHEDIGTTEIYTHMETSDLKREILE- 296

Query: 314 YDQTHPSITQK 324
               HP   + 
Sbjct: 297 ---HHPRNLKH 304


>gi|258544388|ref|ZP_05704622.1| tyrosine recombinase XerD [Cardiobacterium hominis ATCC 15826]
 gi|258520347|gb|EEV89206.1| tyrosine recombinase XerD [Cardiobacterium hominis ATCC 15826]
          Length = 289

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 154/305 (50%), Gaps = 19/305 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + + + +E GL++ ++ SY  D R           E++  + +   S  +++A +++
Sbjct: 3   IERFCEAMWLEAGLAEASVASYRRDLR---------LAERLCAKPLSDFSAADVQAVLAQ 53

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
               +    SL R    ++ F  ++ + ++  +   + +  ++    LPR+L+E +   L
Sbjct: 54  LLDLQRKASSLARMRVSLRRFFAWMVEERLRADDPTVLLEAVRHEKPLPRSLSEAEVERL 113

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +    L T         R++A+L LLY CGLR+SE + L    +   ++ LR++GKGDK+
Sbjct: 114 LAAPDLATPA-----GLRDAAMLELLYACGLRVSELVGLPLSAVFLQEAVLRVRGKGDKV 168

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+     + +  Y     P  L   +   LF   RG  +N   F + I      +G+
Sbjct: 169 RLVPMGEQAAEMVERYCREARPLLLEGRVSDVLFIAARGGAMNRRTFWKLIHDYAIAVGI 228

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HTLRH+FATHL+++G DLR +Q +LGH  LSTTQIYT+V        + +++  
Sbjct: 229 RTAVSPHTLRHAFATHLVNHGADLRVVQMLLGHSNLSTTQIYTHVAEAR----LAKVFAA 284

Query: 317 THPSI 321
            HP  
Sbjct: 285 HHPRA 289


>gi|332704140|ref|ZP_08424228.1| Tyrosine recombinase xerC [Desulfovibrio africanus str. Walvis Bay]
 gi|332554289|gb|EGJ51333.1| Tyrosine recombinase xerC [Desulfovibrio africanus str. Walvis Bay]
          Length = 322

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 150/307 (48%), Gaps = 16/307 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L++L + +GLS+ +L +Y  D    L FL            + +++   +  ++  
Sbjct: 18  IDRYLEHLLVSKGLSENSLTAYATDFESLLEFLTEK------ALPMERVTPQTLLLYLLH 71

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R + +G+RS+ R LS ++ F  +  +     E+    + N K   +LP  L+ ++   +
Sbjct: 72  LRRKGLGNRSMARHLSALRGFFAFALEEGWLVENPAELLENPKLPQTLPEVLSREEVERM 131

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++            +  R+ A+L LLY  GLR+SE + L P +       LR+ GKG K 
Sbjct: 132 LER-----PDTRTKLGFRDRAMLELLYAAGLRVSELVDLRPLDFDPQTGVLRVFGKGSKE 186

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VPL    ++ +L Y      +    ++  +F    GK L      + I++     G+ 
Sbjct: 187 RLVPLHDLAQRFVLAYL-ESWRNSFKPLEEHMFLNRSGKGLTRQAIWKLIKRYALEAGIF 245

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + HT+RHSFATHLL  G DLR++Q +LGH  +S T+IYT++ +      ++ ++ + 
Sbjct: 246 REISPHTMRHSFATHLLEGGADLRTVQILLGHADISATEIYTHLQTSR----LLAVHREH 301

Query: 318 HPSITQK 324
           HP   +K
Sbjct: 302 HPRSARK 308


>gi|319792815|ref|YP_004154455.1| tyrosine recombinase xerd [Variovorax paradoxus EPS]
 gi|315595278|gb|ADU36344.1| tyrosine recombinase XerD [Variovorax paradoxus EPS]
          Length = 303

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 151/305 (49%), Gaps = 14/305 (4%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E   ++  L +E GLSK TL +Y  D   F  +L     ++ +   +     ++++A++ 
Sbjct: 11  EIDEFIDALWLEDGLSKNTLAAYRRDLALFSQWLG----KQRSGIALDTAQESDVQAYMG 66

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            R + K    S  R L+  K + ++  + +  T    + +   ++     + L+EKQ   
Sbjct: 67  VRLSTKGKATSANRRLTVFKRYYRWALRERRITADPTIRLAPARQMPRAIKTLSEKQVDD 126

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+             +  R+ A+L ++Y  GLR+SE ++L   ++  +   LR+ GKG+K
Sbjct: 127 LL-----AAPDVETPLGLRDRAMLEVMYASGLRVSELVALKVIDMSLNDGVLRVLGKGNK 181

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R+VP     R+ I  Y +     +    Q P LF   RG  +   +F   +++     G
Sbjct: 182 ERLVPFGGEARRWIERYLEESRPVILDGQQTPDLFVTARGAGMTRVMFWIIVKKQAAAAG 241

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           + +  + HTLRH+FATHLL++G DLR++Q +LGH  +STT IYT+V  +     + +++ 
Sbjct: 242 IHVPLSPHTLRHAFATHLLNHGVDLRAVQLLLGHADISTTTIYTHVARER----LKQLHA 297

Query: 316 QTHPS 320
             HP 
Sbjct: 298 AHHPR 302


>gi|302035680|ref|YP_003796002.1| tyrosine recombinase xerC [Candidatus Nitrospira defluvii]
 gi|300603744|emb|CBK40076.1| Tyrosine recombinase xerC [Candidatus Nitrospira defluvii]
          Length = 317

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 93/312 (29%), Positives = 150/312 (48%), Gaps = 15/312 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +  + +L  L +++  S  T+++Y  D  QF  F A   ++         ++   IR 
Sbjct: 1   MDRAIRTFLDVLAVQQNASSQTIRAYTSDLAQFHAF-ALGVQQPGGTLVPESVTPALIRE 59

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F++ R        SL R L+ ++SF +YL +      +   ++R  K    L + L +  
Sbjct: 60  FLAARDRTGDKKTSLARKLACLRSFFRYLVRIGQLDVNPAEDVRAPKLPKHLSQVLTKDD 119

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           A  L++         T+ +  R+ AIL  LY  G R+SE + +   +I   +  +R++GK
Sbjct: 120 AGALMEF-----PGGTERVGLRDRAILETLYSTGARVSELVGMNCDDISRSEGLVRLRGK 174

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCP----FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           G K R++PL     +AI  Y+             +    +FR  RG  L      R + +
Sbjct: 175 GRKERVIPLGIIALEAIDAYHAQIQAVPGPSSGRSDAAAVFRNSRGGRLTTRTIARIVAK 234

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             R L    +   HTLRHSFATHLL  G DLR+IQ +LGH  LSTTQ YT++ +    D 
Sbjct: 235 YSRQLT-GGAVHPHTLRHSFATHLLDEGADLRAIQEMLGHASLSTTQKYTHLAT----DQ 289

Query: 310 MMEIYDQTHPSI 321
           ++ +YD+THP  
Sbjct: 290 LLALYDRTHPRA 301


>gi|296157219|ref|ZP_06840055.1| tyrosine recombinase XerD [Burkholderia sp. Ch1-1]
 gi|295892555|gb|EFG72337.1| tyrosine recombinase XerD [Burkholderia sp. Ch1-1]
          Length = 311

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 138/304 (45%), Gaps = 17/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +   L +E GLS+ TL +Y  D R F  +LA          ++   S  ++ A+ + 
Sbjct: 23  IDAFCDALWLEHGLSRNTLDAYRRDLRLFCEWLAQSRN-----ASLDTASEADLNAYSAA 77

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  QK    S  R LS  + +  +  +   T     + +R+ K+    P  L E Q   L
Sbjct: 78  R--QKDKSTSANRRLSVFRRYYSWAVREHRTKIDPTVRIRSAKQPPRFPSTLTEAQVEAL 135

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +             +  R+  +L L+Y  GLR++E ++L    +  ++  +R+ GKG K 
Sbjct: 136 L-----GAPDVDTPLGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKE 190

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R++P        I  Y     P  L       LF   R + +    F   I++     G+
Sbjct: 191 RLIPFGEEAHGWIERYLREARPVLLGARATDALFVTSRAEGMTRQQFWNIIKRHAAAAGV 250

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++ Q
Sbjct: 251 NAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARER----LKSLHAQ 306

Query: 317 THPS 320
            HP 
Sbjct: 307 HHPR 310


>gi|254804308|ref|YP_003082529.1| site-specific recombinase [Neisseria meningitidis alpha14]
 gi|254667850|emb|CBA03883.1| site-specific recombinase [Neisseria meningitidis alpha14]
          Length = 305

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 85/313 (27%), Positives = 148/313 (47%), Gaps = 13/313 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
                  +L+N+  E G S+ T+ +Y  D  +    LA    E       + LS  +  A
Sbjct: 6   FAAHFDAYLENIVRE-GKSEHTVAAYRRDLEELFALLAQMPSEDAG-GVPQDLSRRDFTA 63

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            + +   + +  R+L R LS  + +  +L +R +       +++  K+   +P+AL ++ 
Sbjct: 64  ALRRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEW 123

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++D  +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GK
Sbjct: 124 LNRMLDLPV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGK 179

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R VPL+    +A+  Y  L     +      LF G  G  L+    Q+ + Q    
Sbjct: 180 GRKQRQVPLVGKSVEALKNYLPLRQTASDGK---ALFTGRNGTRLSQRQIQKRLAQWAAQ 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G     + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +
Sbjct: 237 NGDGRHVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARL 292

Query: 314 YDQTHPSITQKDK 326
           YD+ HP   ++D+
Sbjct: 293 YDEAHPRAKRQDE 305


>gi|145639433|ref|ZP_01795038.1| tyrosine recombinase [Haemophilus influenzae PittII]
 gi|145271480|gb|EDK11392.1| tyrosine recombinase [Haemophilus influenzae PittII]
          Length = 295

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 91/312 (29%), Positives = 151/312 (48%), Gaps = 17/312 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +L     +   L IER +S  T+ +Y+      +  LA     +  I +  Q++ + +R 
Sbjct: 1   MLTALNRYWDYLRIERQMSPHTITNYQHQLDATIKILA-----QQDIHSWTQVTPSVMRF 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            +++ + Q + ++SL   LS ++ FL +L ++     +    +   K+   LP+ ++ +Q
Sbjct: 56  ILAESKKQGLKEKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQ 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+       +   + ID R+ AIL L+Y  GLR+SE   L   +I      +R+ GK
Sbjct: 116 VQQLL------ANDSKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R+VP       AI E+  +    L       LF    G  ++    Q+ +      
Sbjct: 170 GNKERVVPFGRYASHAIQEWLKVR--ALFNPKDEALFVSQLGNRISHRAIQKRLETWGIR 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    + E+
Sbjct: 228 QDLNSHLNPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEV 283

Query: 314 YDQTHPSITQKD 325
           YDQ HP   +K 
Sbjct: 284 YDQAHPRAKRKK 295


>gi|281424791|ref|ZP_06255704.1| tyrosine recombinase XerD [Prevotella oris F0302]
 gi|281401161|gb|EFB31992.1| tyrosine recombinase XerD [Prevotella oris F0302]
          Length = 307

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 87/309 (28%), Positives = 150/309 (48%), Gaps = 16/309 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L+ L++ER  S+ TL +Y  D    + +      E      +  L   +++ F + 
Sbjct: 12  LKSYLRYLKLERNYSQNTLDAYSHDITWLMDYCKREGLE------VTALQLEDLQHFAAT 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
               +IG RS  R LSGI+SF ++L             + +      LP  L+  +    
Sbjct: 66  LHEFQIGPRSQSRILSGIRSFYRFLLLDGYIETDPTELLESPALGQHLPEVLSTAEV--- 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
             ++L  +   +K    RN AI+ +L+ CGLR+SE ++L    +  D   +R+ GKG K 
Sbjct: 123 --DMLEQSIDLSKLEGQRNLAIIEVLFSCGLRVSELVNLKLSQLYLDDGFIRVLGKGSKE 180

Query: 198 RIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+ P   K +  ++      ++    +  +F   RG  L   +    I++     G+
Sbjct: 181 RLVPISPRAIKELQLWFTDRVHLNIKPGEEDFVFLNRRGHHLTRTMILIMIKRQAEEAGI 240

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++      + E    
Sbjct: 241 KKTISPHTLRHSFATALLQGGADLRAIQAMLGHESIGTTEIYTHIDT----TTLREEILN 296

Query: 317 THPSITQKD 325
            HP   +K+
Sbjct: 297 HHPRNMRKN 305


>gi|237654487|ref|YP_002890801.1| tyrosine recombinase XerC [Thauera sp. MZ1T]
 gi|237625734|gb|ACR02424.1| tyrosine recombinase XerC [Thauera sp. MZ1T]
          Length = 304

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 85/315 (26%), Positives = 144/315 (45%), Gaps = 20/315 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
               L +  Q WL  L  +R +S LTL +Y    +  L     +  E         L   
Sbjct: 9   APAALPERMQAWLAWLATQRRVSPLTLTAYRAGLQALLRLAEEHPPE--------SLQPA 60

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +IR F+++   +    RS+ R LS  + F ++L +      +  L +R  K  ++LPR L
Sbjct: 61  DIRRFVARLHGEGQQGRSIARHLSAWRGFYRWLVREHGVRINPALGIRPPKSPSTLPRVL 120

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTL 188
           + +QA  L+D            ++ R+ A+  L Y  GLR++E   L   +     +  +
Sbjct: 121 SPEQANALLD------PEPQNLLEIRDIAMFELFYSSGLRVAELAGLDIDSGLDLAEGLV 174

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GK  + R VP+      A+  + ++    L    +  LF    G  L+       + 
Sbjct: 175 TVTGKRQRQRTVPVGGKAIAALRPWLEIRAG-LAAAGERALFVTRDGHRLSTRGIASRLG 233

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
              + LGL +    H LRHSFA+HLL + GDLR++Q +LGH  + +TQIYT+++ ++   
Sbjct: 234 TRAQALGLGVHVHPHMLRHSFASHLLQSSGDLRAVQELLGHASIRSTQIYTHLDFQH--- 290

Query: 309 WMMEIYDQTHPSITQ 323
            +  +YD  HP   +
Sbjct: 291 -LAAVYDAAHPRARK 304


>gi|73662825|ref|YP_301606.1| integrase recombinase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|82582337|sp|Q49X37|XERC_STAS1 RecName: Full=Tyrosine recombinase xerC
 gi|72495340|dbj|BAE18661.1| putative integrase recombinase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 296

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 86/312 (27%), Positives = 151/312 (48%), Gaps = 16/312 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + K +Q +L  L++E+  S+ TL+SY  D  QF +FLA           +    Y + R 
Sbjct: 1   MEKIQQAYLYMLKVEKQFSEHTLKSYHDDLEQFNVFLAQEH------LDLNAFEYKDARN 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++S   ++ +   S+ R +S ++SF +Y   +     +  + + + KK + LP    E++
Sbjct: 55  YLSYLYSKNLKRTSVSRKISTLRSFYEYWMTQDEAVVNPFIQLVHPKKEHYLPHFFYEEE 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L D     T         R+  IL LLY  G+R+SE + +  Q+I      +++ GK
Sbjct: 115 MEALFD-----TVENDAKKGLRDRVILELLYSTGIRVSELVHIKEQDIDMTSPGVKVLGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R +P     ++++  Y       LN N    L   ++G P+     +  +  + + 
Sbjct: 170 GGKERFIPFGEFCKQSMERYLASFKPKLNSN-HDYLLVNMKGDPITERGVRYVLNDVVKR 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                    H LRH+FATH+L+ G DLR++QS+LGH  LSTT  YT+V ++     + ++
Sbjct: 229 TAGVTEIHPHKLRHTFATHMLNQGADLRTVQSLLGHVNLSTTGRYTHVTNEQ----LRKV 284

Query: 314 YDQTHPSITQKD 325
           Y   HP   +++
Sbjct: 285 YLNAHPRAKKEN 296


>gi|269123216|ref|YP_003305793.1| integrase family protein [Streptobacillus moniliformis DSM 12112]
 gi|268314542|gb|ACZ00916.1| integrase family protein [Streptobacillus moniliformis DSM 12112]
          Length = 299

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 90/312 (28%), Positives = 148/312 (47%), Gaps = 14/312 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + K  + +L   ++    S  T++SY+ D  QF+ +L         I+   ++     R+
Sbjct: 1   MDKLLEKFLYYQDVVLNKSFNTVKSYKKDLEQFIEYLK----NNEGIEDFNKVEIFTFRS 56

Query: 74  FISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           FI+    + ++  RS+ R LS I++F KYL +     E+  + +   K    LP  L ++
Sbjct: 57  FIAYLNVELQVNKRSINRKLSAIRTFFKYLLENDYIIENKAVYISTPKFEKPLPNFLTKE 116

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L   + L      K    R+ AI+ LLY  GLR  E L LT   I      +R+ G
Sbjct: 117 DIDKLRSVIKLE-----KITGLRDRAIIELLYSSGLRSMELLDLTEYTIDLKNMEVRVIG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG+K RI     + +K I EY +    +     +  +F    G  L+    +R I +   
Sbjct: 172 KGNKERISFFSNNAQKYISEYIERKKEEYKNYNKDAIFVNKDGNKLDSRSLRRLITKYSI 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    T H  RHSFAT LL+ G D+R +Q +LGH  ++TTQ YT+++     + + +
Sbjct: 232 KAGINKEVTPHIFRHSFATELLNQGVDIRFVQELLGHSSIATTQFYTHIS----KNTLKD 287

Query: 313 IYDQTHPSITQK 324
            Y ++HP  T+K
Sbjct: 288 AYMKSHPFATKK 299


>gi|189346148|ref|YP_001942677.1| integrase family protein [Chlorobium limicola DSM 245]
 gi|189340295|gb|ACD89698.1| integrase family protein [Chlorobium limicola DSM 245]
          Length = 337

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 98/332 (29%), Positives = 160/332 (48%), Gaps = 21/332 (6%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQTIRQ 65
           P         E + +L  L+ ++ +S  TL +Y  D  QF IF+A +     +      Q
Sbjct: 10  PTAPDGRRYPEIERFLDYLKSQKNVSSHTLTAYRNDLDQFSIFIASHLGIGDMRNFLPEQ 69

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           L+  ++R ++       +  +S+ R L+ +KSF +YL+   I   S +  +   K   ++
Sbjct: 70  LAVVDVRLYMGYLLKNGLQPKSIARKLATLKSFYRYLQHIGIIRTSVLAYVTTPKYPRTV 129

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARN----------SAILYLLYGCGLRISEALS 175
           P  L E+Q   L   VL  +S +     A++           A+L +LY CGLRISE   
Sbjct: 130 PGFLTEQQTEKLFGEVLSGSSADASRSGAQDIQEQFELERDRALLEVLYSCGLRISELTG 189

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC------PFDLNLNIQLPL 229
           L   N+  +   ++I GKG+K RIVPL     +A+ +Y+++           +      +
Sbjct: 190 LEMHNLSLENGYVKITGKGNKQRIVPLGSCAVEALKKYFEVRRNFFRIFLKGDAGALAHV 249

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F   +GK + P + QR  R+    +        H LRHSFATHLL++G DL+S+  +LGH
Sbjct: 250 FVTKKGKKIYPMLVQRITRKYLTPVTEQKERNPHILRHSFATHLLNSGADLKSVSEMLGH 309

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
             L+TT+IYT+V        + E+Y + HP  
Sbjct: 310 SSLTTTEIYTHVTFSR----LSEVYRKAHPKA 337


>gi|269120433|ref|YP_003308610.1| integrase family protein [Sebaldella termitidis ATCC 33386]
 gi|268614311|gb|ACZ08679.1| integrase family protein [Sebaldella termitidis ATCC 33386]
          Length = 307

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 91/323 (28%), Positives = 154/323 (47%), Gaps = 17/323 (5%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ME +   E+    L++  + +L   E+  G S  T++ Y  D  QF+ +++   E    I
Sbjct: 1   MEESKEKEL----LIEPLEKFLHFQEVILGKSYNTIRGYRKDITQFIDYISGNEE----I 52

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
               ++    +R+FI+     ++G RS+ R +S +++F  YLK++ I   + ++ +   K
Sbjct: 53  FDYNKVEVFTVRSFIAYSNNNEVGKRSINRKISALRTFFAYLKEQNIVEANKLIYVNMPK 112

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LP  L +        N L +    +K    R+  I+  LY  GLR SE +SL+   
Sbjct: 113 FEKELPTVLTKDDI-----NKLRNVIDISKVTGIRDRLIIEFLYSSGLRSSELVSLSELM 167

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I  ++  +R+ GKG+K R+     + RK   +Y      +        +F   RG+ +  
Sbjct: 168 INLEEREVRVLGKGNKERVTFFSENARKWYEKYISAKRNEYKNYTPNIVFVNSRGERITT 227

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              +R I       G+    T H  RHSFAT LL+N  D+R +Q +LGH  +STTQ+YT+
Sbjct: 228 RSLRRLIADYAEKAGINKEVTPHVFRHSFATTLLNNKVDIRYLQELLGHSSISTTQVYTH 287

Query: 301 VNSKNGGDWMMEIYDQTHPSITQ 323
           V+       + EIY + HP   +
Sbjct: 288 VS----KALLREIYIKAHPLADE 306


>gi|78484754|ref|YP_390679.1| Phage integrase [Thiomicrospira crunogena XCL-2]
 gi|78363040|gb|ABB41005.1| tyrosine recombinase XerC subunit [Thiomicrospira crunogena XCL-2]
          Length = 317

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 93/329 (28%), Positives = 160/329 (48%), Gaps = 30/329 (9%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIF-LAFYTEEKIT-------------- 59
           + + Q +++ L++E   S+ T+ +Y+ D    L+F L  Y E+ +               
Sbjct: 1   MSDYQRFIKQLKLE-NKSEHTISNYQRDLMGLLVFYLGDYLEQPLDEKALKSDQAWAFLD 59

Query: 60  -IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
                + +    ++AFI+ R  Q I  RS+ R LS I++F  +L ++     +    ++ 
Sbjct: 60  QFDDWQAIKLPVLQAFIAFRMQQGIAARSIARQLSAIRAFYAFLIEQGRANHNPAKGLKA 119

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            K+  +LP++L+      L++  L        W D R+ AI  +LY  GLR+SE + L  
Sbjct: 120 PKQPKALPKSLDVDLTRQLLEQPL------KTWQDVRDQAIFEILYSGGLRVSELVELDL 173

Query: 179 QNIMDD--QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
              +D      +R+ GKG K R  P+    +KA+  + ++   D     +  +F    GK
Sbjct: 174 SPGLDGLASGWVRVLGKGQKERDAPVGQPAQKALHRWLEIRS-DYAQPGEQAVFVNRFGK 232

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L     Q  + +     GLP   + H LRH+ ATH+L + GDLR++Q +LGH  LSTTQ
Sbjct: 233 RLGVRSIQTQLDKRTLQAGLPTKMSPHRLRHACATHVLESSGDLRAVQEMLGHANLSTTQ 292

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           IYT ++ ++    +  +YD+ HP   +K 
Sbjct: 293 IYTKLDLQH----LATVYDKAHPRAKKKP 317


>gi|262370170|ref|ZP_06063497.1| tyrosine recombinase XerD [Acinetobacter johnsonii SH046]
 gi|262315209|gb|EEY96249.1| tyrosine recombinase XerD [Acinetobacter johnsonii SH046]
          Length = 305

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 92/322 (28%), Positives = 149/322 (46%), Gaps = 23/322 (7%)

Query: 4   NNLPEIVSFELLKERQNWL----QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
           N  P + +   +  + ++L      L  +  +S  T  +Y  D  Q          E   
Sbjct: 3   NKKPRVPAPVQIPTQLSFLHGFKDYLIAQ-TVSPHTRNAYLSDLLQCSECSHVSMPE--- 58

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
                  S  ++   +     Q    RS+ R LS ++SF K+L+++K+ +++ +   +  
Sbjct: 59  ------WSSDDVADVLLTLTKQGKSPRSIARCLSALRSFFKFLREQKLRSDNPVALHKTP 112

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K   +LP+ L+E+    L+             +  R+ A+  +LY CGLR+SE L+L   
Sbjct: 113 KIGRALPKDLSEQDVDALI-----QAPDIETALGLRDRAMFEVLYACGLRVSELLNLRLD 167

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
            I   Q  LRI GKG+K R+VPL     + + +Y       L  +    LF    G  ++
Sbjct: 168 LINLKQGYLRITGKGNKERLVPLGQIAVEWVEKYLIESRPQLYKSATDYLFLTQHGGIMS 227

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
              F   I++     G+    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT
Sbjct: 228 RQNFWYAIKRYALQAGIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYT 287

Query: 300 NVNSKNGGDWMMEIYDQTHPSI 321
           +V        M +++   HP  
Sbjct: 288 HVAQVR----MQQLHASHHPRA 305


>gi|259906886|ref|YP_002647242.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224962508|emb|CAX53963.1| Tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|283476679|emb|CAY72508.1| Tyrosine recombinase xerC [Erwinia pyrifoliae DSM 12163]
 gi|310766134|gb|ADP11084.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 302

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 82/310 (26%), Positives = 149/310 (48%), Gaps = 17/310 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL   + +L+ L++ER LS LT   Y       ++ L     +++ +    +L    +RA
Sbjct: 7   LLAGVEGFLRFLKVERQLSPLTQIGYRRQLSAIIVLL-----DELKVVEWARLDAALVRA 61

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             ++     +   SL   LS ++SFL +L  +     +    +   + +  LP+ ++  +
Sbjct: 62  LAARSTRSGLKPASLALRLSALRSFLDWLVSQGAIKANPAKGVATPRAARHLPKNIDVDE 121

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D  L         +  R+ A+L ++YG GLR+SE + +   ++      + + GK
Sbjct: 122 VNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGIDLGHLDLASGEVWVVGK 175

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R +P+  +    I  + ++   +L       LF   +GK ++    Q+   +    
Sbjct: 176 GSKERRLPMGRTAVHWIENWLEMR--ELFEPQDNALFLSNKGKRISTRNVQKRFAEWGVK 233

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+      H LRHSFATHLL + GDLR++Q +LGH  L+TTQIYT+++ ++    +  +
Sbjct: 234 QGMSSHIHPHKLRHSFATHLLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----LASV 289

Query: 314 YDQTHPSITQ 323
           YD  HP   +
Sbjct: 290 YDAAHPRAKR 299


>gi|119943804|ref|YP_941484.1| tyrosine recombinase XerC [Psychromonas ingrahamii 37]
 gi|254799353|sp|A1SQX0|XERC_PSYIN RecName: Full=Tyrosine recombinase xerC
 gi|119862408|gb|ABM01885.1| tyrosine recombinase XerC subunit [Psychromonas ingrahamii 37]
          Length = 299

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 82/313 (26%), Positives = 152/313 (48%), Gaps = 16/313 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
            L      +L ++  +RGLS +T+ +Y+ +  +F+  L      +  +    +L    +R
Sbjct: 3   ALQPLIDTYLNHIASQRGLSPVTITNYQSNLAEFVALL-----NENKVGCWTELDGQLVR 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
             +     + +  RS+   LS ++SFL YL +  I + +    +   K    LP+ ++  
Sbjct: 58  LMVKTLHKKGLKARSIATKLSALRSFLDYLVQFDILSNNPAKGIAAPKLDKPLPKNVSVD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D        E   +  R+  ++ L+Y  GLR+SE + +  Q+I      + + G
Sbjct: 118 DMFQLLDI------DEKDPLSIRDQCMMELMYSSGLRLSELVGINLQDIKLSAKEIMVTG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R++P+       +  +  + P +  +  +  LF   + K ++    Q  + +   
Sbjct: 172 KGSKQRLLPITDRAVATVKIWLKIRP-EFCIKDEKALFVSKQKKRISARNVQARMEKWGL 230

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              LP     H LRHSFATH+L + G+LR++Q++LGH  L+TTQIYT+++ ++    + +
Sbjct: 231 KQALPGHINPHKLRHSFATHMLESSGNLRAVQTLLGHADLATTQIYTHLDFQH----LSK 286

Query: 313 IYDQTHPSITQKD 325
           IYDQ HP   +K 
Sbjct: 287 IYDQAHPRAKRKK 299


>gi|295108294|emb|CBL22247.1| tyrosine recombinase XerD subunit [Ruminococcus obeum A2-162]
          Length = 294

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 81/308 (26%), Positives = 155/308 (50%), Gaps = 16/308 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +  ++++  L   +  SK T  SYE D ++ + +L     ++  + +  +++ T+++ 
Sbjct: 1   MERVVEDFILYLHETKNTSKNTEVSYERDLKKLIRYL-----QEQDLTSFSEVTCTDLQG 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++K +++ +   ++ R+++ I++   YL K+ I  E     +   K    LP  L+ ++
Sbjct: 56  YLNKIKSENLAASTISRNIASIRALYHYLLKKGIVAEDPTEVLHTPKIEKKLPEILSVEE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+    + T         R++A++ LLY  G+R+SE + L+  +I      + +   
Sbjct: 116 VDRLLKQPDIRTPK-----GIRDNAMMELLYATGMRVSELIHLSTTDINLQMGYV-VCHD 169

Query: 194 GDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
            DK RI+P+    R AIL+Y      F      +  LF    GK ++   F + ++    
Sbjct: 170 SDKERIIPIGNVSRNAILQYMEHSRGFFTKDTNESALFTNCSGKSMSRQGFWKVLKGYAA 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    T HTLRHSFA H+L NG D++S+Q +LGH  +S+TQIY  +N       M +
Sbjct: 230 DAGIHRDITPHTLRHSFAAHMLQNGADVKSVQEMLGHADISSTQIYLGLN----VSKMRD 285

Query: 313 IYDQTHPS 320
           +Y + HP 
Sbjct: 286 VYMKAHPR 293


>gi|315604216|ref|ZP_07879282.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313922|gb|EFU61973.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 316

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 85/318 (26%), Positives = 148/318 (46%), Gaps = 22/318 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            ++W+  L +E+G S  T+ +Y  D  +++  +     E     T+  +S  ++   ++ 
Sbjct: 8   VRDWVDYLRVEKGASTHTVSNYLRDASRYVRDM-----ESRGRATLTDVSAHDVEEHLAG 62

Query: 78  RRTQKIG-----DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
             + ++        S+ R+ + I+   +Y     +        +R  ++ + LP+AL+  
Sbjct: 63  LASGQVSGRPAAPSSVARACAAIRGLHRYALAEGVLNVDVTAQLRAPRQGSHLPKALSVD 122

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRI 190
           +   L+D        +   I  R++A+L LLY  G R+SEA++L+  ++  D     +R+
Sbjct: 123 EVGRLLD----AAHADDTPIGLRDAALLELLYATGARVSEAVALSADDLDLDGQVPVVRL 178

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIR 248
            GKG K RIVP+     +A+  Y       L         LF   RG  L+       IR
Sbjct: 179 FGKGRKERIVPVGSFAIEALDAYRVRARPVLAARGSGSTALFLNSRGSALSRQSAWTAIR 238

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +  +   L    + HTLRHSFATHLL  G  +R +Q +LGH  ++TTQIYT V       
Sbjct: 239 RAAQAANLAHRVSPHTLRHSFATHLLEGGASVREVQELLGHASVATTQIYTRVT----AT 294

Query: 309 WMMEIYDQTHPSITQKDK 326
            + E++  +HP     D+
Sbjct: 295 VLREVFTVSHPRARGTDE 312


>gi|308389967|gb|ADO32287.1| putative integrase/recombinase [Neisseria meningitidis alpha710]
 gi|325131510|gb|EGC54217.1| tyrosine recombinase XerC [Neisseria meningitidis M6190]
 gi|325139236|gb|EGC61782.1| tyrosine recombinase XerC [Neisseria meningitidis ES14902]
          Length = 305

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 85/313 (27%), Positives = 147/313 (46%), Gaps = 13/313 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
                  +L+N+  E G S+ T+ +Y  D  +    LA    E       + LS  +  A
Sbjct: 6   FAAHFDAYLENIVRE-GKSEHTVAAYRRDLEELFALLAQMPSEDAG-GVPQDLSRRDFTA 63

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            + +   + +  R+L R LS  + +  +L +R +       +++  K+   +P+AL ++ 
Sbjct: 64  ALRRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEW 123

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++D  +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GK
Sbjct: 124 LNRMLDLPV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGK 179

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R VPL     +A+  Y  L     +      LF G  G  L+    Q+ + Q    
Sbjct: 180 GRKQRQVPLTGKSVEALKNYLPLRQTASDGK---ALFTGRNGTRLSQRQIQKRLAQWAAQ 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G     + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +
Sbjct: 237 NGDGRHVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARL 292

Query: 314 YDQTHPSITQKDK 326
           YD+ HP   ++D+
Sbjct: 293 YDEAHPRAKRQDE 305


>gi|258539622|ref|YP_003174121.1| tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705]
 gi|257151298|emb|CAR90270.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705]
          Length = 299

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 87/308 (28%), Positives = 149/308 (48%), Gaps = 12/308 (3%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++K    + + L +ER  S  T+ +Y  D ++F  FL              ++   +++ 
Sbjct: 1   MMKPLAAFQEYLTVERQYSPETVTAYLNDIQEFQAFLKANG----GFTDFSKVDDLDVQT 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++    Q +   S+ R +S ++SF +YL +  +   +    +   K+ + LP+   E +
Sbjct: 57  YLTDLNKQALARTSIARKISSLRSFYRYLVRIDVVKRNPFELVELKKQHHHLPQFFYEAE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L   V   T      +D RN A+L +LYG G+R+SE  +LT   +  +   L I GK
Sbjct: 117 IQELFKTVEGETP-----LDQRNRALLEVLYGTGIRVSECANLTLNQVDFNTGLLLIHGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           G+K R VP     ++A+  Y       L   +      +F    G+P+     +  + QL
Sbjct: 172 GNKDRYVPFGRYAQRALQTYLKDGRQTLMNKHDAQHRFVFVNQYGRPITARGIEYILDQL 231

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +   L  +   H LRHSFATH+L +G DLR++Q +LGH  LSTTQIYT+V   +  +  
Sbjct: 232 IKQTSLTANIHPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEY 291

Query: 311 MEIYDQTH 318
           M+ Y + +
Sbjct: 292 MKYYPKHN 299


>gi|237785754|ref|YP_002906459.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758666|gb|ACR17916.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 327

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 86/318 (27%), Positives = 149/318 (46%), Gaps = 21/318 (6%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
            VS +     +++L  L   +G S+ T+++Y  D    +            + T+ QL+ 
Sbjct: 26  AVSAQWDGIIEDYLDFLTFTKGRSENTVKAYRNDLHSLVD----------GLTTVDQLTL 75

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             IR + +          SL R  S +++F ++L+ R I        + + +   +LPR 
Sbjct: 76  HHIRRWQADALRAGHARSSLSRRASAVRNFGRWLEHRGIVQSDPASRLSSPRPDKTLPRV 135

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L   Q   ++ + L   + E   I  R+ A++  +YG G+R+SE   L   ++   + T+
Sbjct: 136 LAADQTAEIL-HNLEVGAEEEDPIALRDLAMVEFMYGTGVRVSELCRLNIGDLDFARQTV 194

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVF 243
            I GKG+K R+VP   S   A+  + D+    +  N         +F G RG  ++P   
Sbjct: 195 TILGKGNKQRVVPFGESAAHALKRWIDIGRPAIAANGHHKDADEAVFLGKRGGRIDPRQV 254

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +  + Q    +      + H LRHS AT +L  G DLR +Q +LGH  L+TTQIYT+V+S
Sbjct: 255 RTVVHQATSTVS-GGDVSPHALRHSAATDVLEGGADLRVVQEMLGHASLATTQIYTHVDS 313

Query: 304 KNGGDWMMEIYDQTHPSI 321
           +     +  +++Q HP  
Sbjct: 314 ER----LKAVFNQAHPRA 327


>gi|237732945|ref|ZP_04563426.1| site-specific tyrosine recombinase xerD [Mollicutes bacterium D7]
 gi|229384014|gb|EEO34105.1| site-specific tyrosine recombinase xerD [Coprobacillus sp. D7]
          Length = 302

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 89/310 (28%), Positives = 159/310 (51%), Gaps = 14/310 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                + Q L +E+GLSK T+ SY  D   F  F+     E+  I  I  ++   I  ++
Sbjct: 5   DALSEYKQYLIVEKGLSKNTIYSYLRDLIAFSNFIG----EEYEINQIENINKEHIHLYL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            +  ++     S+ R L  ++    +L K  I  E+ + +    K+   LP  L++++ +
Sbjct: 61  KEL-SKTNCTNSISRKLVSLRMLYIFLVKENIVKENLMSSFTLPKRDKKLPIILSQEEMI 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            ++D +++        I +RN  ++ LLY  G+RISE L+LT +++      +++ GKG+
Sbjct: 120 EILDGIIV-----CDAISSRNRCMVELLYATGMRISELLNLTLKDLNIKMGFIKVIGKGN 174

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R++P+   V + + +Y +    + N+     LF    G+ L+   F   ++ +     
Sbjct: 175 KERMIPIGSYVGEILEQYINDYRAEFNIKNDSLLFFNKHGQRLSREEFYSILQTIVNSTS 234

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + HT RH+FATHLL NG DLRSIQ +LGH  +STT IYT+++++     +   Y 
Sbjct: 235 ITKKVSPHTFRHTFATHLLENGADLRSIQELLGHSDISTTTIYTHISNQ----KIRSEYQ 290

Query: 316 QTHPSITQKD 325
           Q HP I + +
Sbjct: 291 QFHPRIKKHN 300


>gi|302387936|ref|YP_003823758.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302198564|gb|ADL06135.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 295

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 78/308 (25%), Positives = 136/308 (44%), Gaps = 15/308 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++ E  +++  L   +  SK T  SY+ D  Q   FL     E+  I+ + +++ T + +
Sbjct: 1   MVAEINDFIIYLREIKKTSKNTEVSYQRDLMQLASFL-----EQQGIREVDKVTKTSLTS 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +I     +     ++ R L+ +K+F  +  K     +     ++  K     P  L   +
Sbjct: 56  YILHLEKEGKATTTISRCLASMKAFFHFECKEGRIQKDPAELLKAPKVEKKAPTILTVDE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                 N LL         + R+ A+L LLY  G+R+SE + L   ++      +  + +
Sbjct: 116 V-----NSLLSQPGGETPKELRDRAMLELLYATGIRVSELIHLKKTDVNLSIGYITCRDE 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
               R+VP     + A+  Y +    + L       LF    GK ++   F + I+    
Sbjct: 171 HK-ERMVPFGKVAKLALSAYMERGRVYFLRDQESPWLFTNCNGKSMSRQGFWKIIKFYGD 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    T HTLRHSFA HLL NG D+ ++Q++LGH  ++TTQ+Y N      G+ +  
Sbjct: 230 KAGIKADITPHTLRHSFAAHLLRNGADIHAVQAMLGHSDMATTQMYMNYTQ---GEDLRR 286

Query: 313 IYDQTHPS 320
            Y   HP 
Sbjct: 287 SYTGAHPR 294


>gi|115353184|ref|YP_775023.1| site-specific tyrosine recombinase XerC [Burkholderia ambifaria
           AMMD]
 gi|115283172|gb|ABI88689.1| tyrosine recombinase XerC [Burkholderia ambifaria AMMD]
          Length = 306

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 87/321 (27%), Positives = 159/321 (49%), Gaps = 29/321 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                +L NL+  R LS+ TL++Y  +  +     A         + +  L+  ++R  +
Sbjct: 4   DPIAAYLSNLKHVRQLSEHTLRAYSHELDELKKLAAG--------RPLDTLTAVDMRGAV 55

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++     +  RS+   LS  ++F ++L +      + +  +R  K+  +LP+AL+   A 
Sbjct: 56  ARAHAGGLSARSISHRLSAWRAFYRWLAQHIEMPANPVAAVRAPKRPKTLPKALSVDDAS 115

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-----------MDD 184
            L+D  L  T+        R+ AIL L Y  GLR++E + L  +                
Sbjct: 116 ALMDAPLAGTTE-----GIRDHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLA 170

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           ++ + ++GKG+K R VP+      A+  +  +    +  +   PLF  +RG  + PGV +
Sbjct: 171 EAEVTVRGKGNKERKVPVGRKAIDALNAWLAVRGEFVKHDPH-PLFVSVRGNRMAPGVVR 229

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  +S TQ+YT+++ +
Sbjct: 230 ERVKRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQ 289

Query: 305 NGGDWMMEIYDQTHPSITQKD 325
           +    + +IYD  HP   ++D
Sbjct: 290 H----LAKIYDSAHPRAKKRD 306


>gi|319791651|ref|YP_004153291.1| integrase family protein [Variovorax paradoxus EPS]
 gi|315594114|gb|ADU35180.1| integrase family protein [Variovorax paradoxus EPS]
          Length = 317

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 87/328 (26%), Positives = 151/328 (46%), Gaps = 24/328 (7%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E  +  +      +L+++ +ER L+  T++ Y    +      A           + ++ 
Sbjct: 6   EPTASAVPDWIAKYLEHVRVERRLAARTVELYAFHLQALRENAAEAN------LPLDRVQ 59

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
              IR +++K  +     R +   LS  +SF ++L    +   + + ++   K    LP+
Sbjct: 60  TAHIRRWMAKLHSAGREPRGIALVLSCWRSFYRWLGHEGLIGFNPVQDVHAPKAGRPLPK 119

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT-------PQN 180
           AL    A+ L +   LH      WI+AR+ AI+ +LYGCGLR+SE   L           
Sbjct: 120 ALGVDDAVQLAE---LHDEDADPWIEARDRAIVEILYGCGLRVSELTGLDAQASNTALGW 176

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           +  D     + GKG K RIVP+     +A+ E+ D+            LF   +G  ++ 
Sbjct: 177 VDLDAKEANVLGKGSKRRIVPVGSKAAEALQEWLDVR----GDRSVPALFVSSKGARMSS 232

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               + +R+     GL      H LRHSFA+H+L +  DLR++Q +LGH  ++TTQIYT 
Sbjct: 233 QAVWKLLRERSLKAGLAAPVHPHMLRHSFASHVLQSSSDLRAVQELLGHANIATTQIYTR 292

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           ++ ++    + + YD  HP    +  K+
Sbjct: 293 LDFQH----LAKAYDAAHPRAKARTDKD 316


>gi|56417058|ref|YP_154132.1| integrase/recombinase ripx [Anaplasma marginale str. St. Maries]
 gi|222475424|ref|YP_002563841.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str.
           Florida]
 gi|56388290|gb|AAV86877.1| integrase/recombinase ripx [Anaplasma marginale str. St. Maries]
 gi|222419562|gb|ACM49585.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str.
           Florida]
          Length = 316

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 113/320 (35%), Positives = 170/320 (53%), Gaps = 14/320 (4%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLI-FLAFYTEEKITIQTIRQLS 67
           + S +LL    NWL  L  ER  S  T+ +YE D   F         E  +++Q +++L 
Sbjct: 5   MGSGDLLSAINNWLCWLREERRYSPNTVAAYERDIMDFYRSVCGEPCERSVSLQEVQELR 64

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
             E R++++ R  Q     S  R++S ++SF +YL  +     S + N+       SLP+
Sbjct: 65  SAEFRSWLADRFKQGKQSASNARAISVVRSFFRYLHHKCGMKSSVVFNISKPIVRRSLPK 124

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L E Q   +++        +  W   R+ A+  LLYGCGLRISEA+++        Q  
Sbjct: 125 VLEEPQMRKVMEE-----PEDLHWTHRRDLAVSALLYGCGLRISEAVNIKF--CDLRQDE 177

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQR 245
           LR+ GKG K R++P+LP VR  I EY   CP       +    +F G+RG  L+   F  
Sbjct: 178 LRVLGKGSKERVIPILPWVRCIIDEYVASCPHQRVHGASSTEYVFVGLRGGRLSRTYFAY 237

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            ++ LRR +GLP +TT HTLRHSFATHL   G D+R +Q +LGH  L+TTQ+YT+++   
Sbjct: 238 RMKGLRRRIGLPETTTPHTLRHSFATHLFLEGADIRVVQELLGHASLATTQVYTHLD--- 294

Query: 306 GGDWMMEIYDQTHPSITQKD 325
             + ++E Y   HP   +K+
Sbjct: 295 -YNSVIENYRGFHPQTIKKN 313


>gi|17547263|ref|NP_520665.1| site-specific tyrosine recombinase XerD [Ralstonia solanacearum
           GMI1000]
 gi|34222936|sp|Q8XWD0|XERD_RALSO RecName: Full=Tyrosine recombinase xerD
 gi|17429565|emb|CAD16251.1| probable integrase/recombinase protein [Ralstonia solanacearum
           GMI1000]
          Length = 308

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 78/307 (25%), Positives = 138/307 (44%), Gaps = 18/307 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  Q +   L +E GL++ TL +Y  D   +  +LA         + + Q    ++  + 
Sbjct: 17  EAIQRFCDALWLEDGLARNTLDAYRRDLTLYAQWLAGRG------KALDQTEDVDLSDYF 70

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           + R    +   +  R  +  K F ++  +  + +      +   K+   +P+ L+E Q  
Sbjct: 71  AARHEDSLA-STANRRRTVFKRFFQWALREHLVSADPTRLLSTAKQPPRVPKTLSEAQVE 129

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KG 194
            L+             +  R+ A++ L+Y  GLR+SE ++L    +  ++  +R+ G KG
Sbjct: 130 ALI-----AAPDVDAPLGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEGVVRVIGGKG 184

Query: 195 DKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            K R+VP        +  Y        L       LF   RG  +    F   I++  + 
Sbjct: 185 GKDRLVPFGAEAGDWLRRYLRDGRTALLGERTADALFVTARGDGMTRQAFWYLIKRYAQR 244

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  +
Sbjct: 245 ADIHAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARER----LRTL 300

Query: 314 YDQTHPS 320
           + Q HP 
Sbjct: 301 HAQHHPR 307


>gi|332531493|ref|ZP_08407395.1| tyrosine recombinase XerD subunit [Hylemonella gracilis ATCC 19624]
 gi|332039045|gb|EGI75469.1| tyrosine recombinase XerD subunit [Hylemonella gracilis ATCC 19624]
          Length = 322

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 87/319 (27%), Positives = 147/319 (46%), Gaps = 24/319 (7%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L     ++  L +E GLS+ TL +Y  D   +  +LA   E K + QT+      ++ A+
Sbjct: 14  LDAVDAFIDALWLEEGLSRNTLAAYRRDLALYARWLAEPREGKAS-QTLDASGEPDLNAY 72

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
            + R  Q     +  R L+  K + ++  + +       L + + K+   +P+ L+E Q 
Sbjct: 73  FAARHAQTRA-TTANRRLTVFKRYFRWAVRERRIQADPTLRLLSAKQPLRVPKTLSEAQV 131

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+             +  R+ A+L L+Y  GLR+SE + L   N+  ++  LR+ GKG
Sbjct: 132 EALL-----AAPDAATPLGLRDRAMLELMYASGLRVSELVGLKIFNVGLNEHVLRVTGKG 186

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDL---------NLNIQLPLFRGIRGKP----LNPG 241
            K R+VP        +  Y      +L                LF  +RG      +   
Sbjct: 187 SKERLVPFGEVAADWMRRYLHEARPELLGQVGASPRAAKQTDDLFVTLRGSRAGEAMTRV 246

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +F   +++     G+    + HTLRH+FATHLL++G DLR++Q +LGH  +STT IYT+V
Sbjct: 247 MFWSLVKKYAVIAGVTSPLSPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHV 306

Query: 302 NSKNGGDWMMEIYDQTHPS 320
             +     +  ++ Q HP 
Sbjct: 307 ARER----LKTLHAQHHPR 321


>gi|259507532|ref|ZP_05750432.1| tyrosine recombinase XerC [Corynebacterium efficiens YS-314]
 gi|259164917|gb|EEW49471.1| tyrosine recombinase XerC [Corynebacterium efficiens YS-314]
          Length = 296

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 86/309 (27%), Positives = 152/309 (49%), Gaps = 21/309 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ++L+  +++   L +  G S  T++ Y  D R              TI  + + +   +R
Sbjct: 9   QMLEAIEDFCDYLILVVGRSDATVRGYRSDLRHMAA----------TIPDLTEFTLPNLR 58

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           A++ +   +     +L R  + +KSF  +  K  + +      + + K + +LPR L E 
Sbjct: 59  AWLGRAVEEGKSRATLARRTASVKSFSTWAVKNGLISGDEAARLVSPKVTRNLPRVLGEV 118

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           QA   + +    T  E +     +SAIL LLY  G+R+SE   L   ++   +  +R+ G
Sbjct: 119 QAGEFMGSAAADTEDEFRR----DSAILELLYATGMRVSELCGLDLGDVDHHRRMVRVLG 174

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KGDK R++P   +   A+ ++ +    D    ++  +F G+RG  ++    +R + +  +
Sbjct: 175 KGDKERMIPFGKAAADALEQWLEAR--DRMAKVEDAMFVGVRGGRIDARQIRRIVDRTAQ 232

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G     + H+LRH+ ATHLL  G DLR +Q +LGH  L TTQIYT+V+S+     ++E
Sbjct: 233 VAG-ADHLSPHSLRHTAATHLLDGGADLRQVQEMLGHSSLQTTQIYTHVSSQR----LLE 287

Query: 313 IYDQTHPSI 321
            + Q HP  
Sbjct: 288 AFRQAHPRA 296


>gi|302872232|ref|YP_003840868.1| tyrosine recombinase XerD [Caldicellulosiruptor obsidiansis OB47]
 gi|302575091|gb|ADL42882.1| tyrosine recombinase XerD [Caldicellulosiruptor obsidiansis OB47]
          Length = 291

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 75/308 (24%), Positives = 140/308 (45%), Gaps = 18/308 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +   + +  +L+ +   S+ T+ SY  D ++++ FL     +      +   S   + A+
Sbjct: 1   MSIIEAFCDHLQKQNRFSQNTISSYLRDAKKYIEFLDNMKIK------LENTSQATLIAY 54

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I   +     + ++ R++  +K F  +LK +KI     I  +   K   + P+ L   + 
Sbjct: 55  IISMQKSGKSNSTIARAIVSLKVFYDFLKTQKIIDIGKIE-IEPPKLEKNPPQILTRDEV 113

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+         E      R+ A+L +LY  G+R+SE ++L   +I  +   +  + K 
Sbjct: 114 EKLL-----SCPKEEDIKGIRDKAMLEVLYATGIRVSELINLNLDDINLEHGYIICKNKK 168

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
              R++P+      A+ +Y     P+      +  LF    G+ +    F + ++   + 
Sbjct: 169 R-DRVIPIGSYAISAVEKYLRHSRPYLAKSKNEEALFLNFNGERMTRQGFWKIVKFYAQS 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    T H LRHSFA HL+ NG D+R++Q +LGH  +STTQ Y  V +      + E+
Sbjct: 228 AGIDKEITPHVLRHSFAIHLIENGADVRAVQQMLGHADISTTQRYLQVAN----VKLKEV 283

Query: 314 YDQTHPSI 321
           Y +THP  
Sbjct: 284 YQKTHPRA 291


>gi|467161|gb|AAA50925.1| u0247d [Mycobacterium leprae]
          Length = 316

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 85/326 (26%), Positives = 146/326 (44%), Gaps = 22/326 (6%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + +  L  + Q +L  L IER ++  TL SY  D  ++   L+        I+ + ++  
Sbjct: 1   MTTAALQTQLQGYLDYLIIERSIAANTLSSYRRDLIRYSKHLSDR-----GIEDLAKVGE 55

Query: 69  TEIRAFISKRRTQK-------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            ++  F+   R          +   S  R+L  ++   ++     +        +R    
Sbjct: 56  HDVSEFLVALRRGDPDSGVAALSAVSAARALIAVRGLHRFAVAEGLVDLDVARAVRPPTP 115

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              LP++L   + L L+++V   +  +   +  RN A+L LLY  G RISEA+ L   ++
Sbjct: 116 GRRLPKSLTVDEVLALLESVGGESGADG-PLVLRNRALLELLYSTGSRISEAVGLDVDDV 174

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-----IQLPLFRGIRGK 236
                T+ +QGKG K R+VP+     +A+  Y      DL            +F   RG 
Sbjct: 175 DTQARTVLLQGKGGKQRLVPVGRPAVQALDAYLVRGRSDLARRGPGMLATPAIFLNARGG 234

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L+     + ++    + G+    + H LRHSFATHLL  G D+R +Q ++GH  ++TTQ
Sbjct: 235 RLSRQSAWQVLQDAAEHAGITSGVSPHMLRHSFATHLLEGGADIRVVQELMGHASVTTTQ 294

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSIT 322
           IYT V  +     + E++   HP   
Sbjct: 295 IYTLVTVQ----ALREVWAGAHPRAK 316


>gi|329929830|ref|ZP_08283506.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
 gi|328935808|gb|EGG32269.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
          Length = 294

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 93/304 (30%), Positives = 149/304 (49%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              ++Q LE E+GLS+ T+ SY  D + FL F A        +   R+++ T +  ++ +
Sbjct: 5   LDEYVQYLEDEKGLSRSTIASYRADLQGFLAFAAERE-----VTHPREVNRTLLGLYVGR 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R Q     SL R  + ++SF +YL ++ +  +     + N K     P++L  +Q   L
Sbjct: 60  LRQQGKAASSLLRCTASLRSFFQYLVRQAVIVQDPTQLLDNPKPERKPPKSLTVEQVDKL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +               AR+ A+L LLY  G+++SE ++L+  +I  +   LR    G K 
Sbjct: 120 L-----SAPDSGTPQGARDKAMLELLYASGIKVSELVNLSVHDIQLEMRFLRCAVSGGKE 174

Query: 198 RIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RI+P+ P   +++  Y  D+    +    +  LF    G  L    F + I++  +   +
Sbjct: 175 RILPITPIAAESVALYVRDMRDKLMRDAGEDALFLNSLGTRLTRQGFWKIIKKYGKLADI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               T HTLRHSFA HLL NG DLRS+Q +LGH  LSTT +Y     ++    M E+YD 
Sbjct: 235 DEDITPHTLRHSFAMHLLGNGADLRSVQEMLGHSALSTTGMY-----QSAKKSMKEVYDH 289

Query: 317 THPS 320
            HP 
Sbjct: 290 YHPR 293


>gi|298208960|ref|YP_003717139.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559]
 gi|83848887|gb|EAP86756.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559]
          Length = 298

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 86/308 (27%), Positives = 155/308 (50%), Gaps = 16/308 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+  +++   L+IERGLS  +++SY  D  + + FL     +   ++    ++   +   
Sbjct: 4   LQTLKDYQHYLKIERGLSLNSIKSYSYDVEKLMKFLEKNDLKTSPLKIDANITKAFVYD- 62

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
                 + + +RS  R +SG+KSF  YL        + +  + + +    LP  L+ ++ 
Sbjct: 63  ----VAKHMNERSQARLISGLKSFFNYLVFEDYRETNPVDLIESPRIGRKLPDTLSLEEI 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+ ++ L      +     N A++  LY CGLR+SE ++L   ++  ++  +++ GKG
Sbjct: 119 DNLIAHIDLSKPEGER-----NRAMIDTLYSCGLRVSELITLNLSDLFFEEGFIKVTGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           +K R VP+    +K I  Y        D+    +  LF   RG+ L   +    ++ L  
Sbjct: 174 NKQRFVPIAEHTQKLISIYKTEIRNHQDIKKGHEDTLFLNRRGRGLTRAMIFTIVKNLSE 233

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL  + + HT RHSFATHLL NG DLR+IQ +LGH  ++TT+IY +++  +    + +
Sbjct: 234 KCGLQKTISPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEIYMHLDQTH----LRD 289

Query: 313 IYDQTHPS 320
           + +Q HP 
Sbjct: 290 VVNQFHPR 297


>gi|290477110|ref|YP_003470023.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004]
 gi|289176456|emb|CBJ83265.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004]
          Length = 304

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 81/311 (26%), Positives = 148/311 (47%), Gaps = 18/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL+  + +L  L +ER LS LT+ +Y                  + I   + L   ++R 
Sbjct: 8   LLEPVETFLHYLRVERRLSPLTITNYRRHLVVLASMSL-----DMGIHEWQALDPAKVRM 62

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F S+ R   +   SL   LS +++FL ++  +     +    +   +K   LP+ ++  +
Sbjct: 63  FASRSRRAGLQSASLALRLSSLRTFLDWMVIQGELDANPAKAVSAPRKKRHLPKNMDVDE 122

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++  L         +  R+  ++ ++YG GLR+SE + L  +++      + +QGK
Sbjct: 123 VNQLLNINL------NDPLSVRDRTMMEVMYGAGLRLSELVGLDCRHLELASGEVWVQGK 176

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRR 252
           G K R VP+     + +  + ++   +L       +F   +  K ++    Q+   Q   
Sbjct: 177 GSKERKVPVGRIALEWLQRWLEMR--ELFEPEDNAVFISTKSGKRISARNVQKRFEQWGV 234

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+      H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++ ++    + +
Sbjct: 235 RQGVNSHIHPHKLRHSFATHILESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LAK 290

Query: 313 IYDQTHPSITQ 323
           +YD  HP   +
Sbjct: 291 VYDVAHPRAKR 301


>gi|239631511|ref|ZP_04674542.1| tyrosine recombinase XerC subunit [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239525976|gb|EEQ64977.1| tyrosine recombinase XerC subunit [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 298

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 89/307 (28%), Positives = 148/307 (48%), Gaps = 12/307 (3%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +K    + + LE+ER  S  T+ +Y  D ++F  FL             R +   +++ +
Sbjct: 1   MKPIAAFQEYLEVERQYSPETVTAYLSDLQEFQAFLKANG----GFTDFRHVDDLDVQTY 56

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++    Q +   S+ R +S ++SF +YL +  +   +    +   K+ + LP+   E + 
Sbjct: 57  LTDLNKQDLARTSIARKISSLRSFYRYLTRIDVVKSNPFELVELKKQHHHLPQFFYEAEI 116

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L       T      +D RN A+L +LYG G+R+SE   LT   +  + + L I GKG
Sbjct: 117 QELF-----KTVAGKTPLDQRNRALLEVLYGTGIRVSECAKLTLNQVDFNTALLLIHGKG 171

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQLR 251
           +K R VP     ++A+  Y       L    Q     +F    G+P+     +  + QL 
Sbjct: 172 NKDRYVPFGQYAQQALRTYLKDGRQVLMAKSQAQHRYVFVNQYGRPITSRGIEYILDQLI 231

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +   L  +   H LRHSFATH+L +G DLR++Q +LGH  LSTTQIYT+V   +  +  M
Sbjct: 232 KQTTLTANIHPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYM 291

Query: 312 EIYDQTH 318
           + Y + +
Sbjct: 292 KYYPKHN 298


>gi|254251134|ref|ZP_04944452.1| Site-specific recombinase XerC [Burkholderia dolosa AUO158]
 gi|124893743|gb|EAY67623.1| Site-specific recombinase XerC [Burkholderia dolosa AUO158]
          Length = 306

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 87/321 (27%), Positives = 159/321 (49%), Gaps = 29/321 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                +L NL+  R LS+ TL++Y  +  +     A         + +  L+  ++R  +
Sbjct: 4   DPIAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAG--------RPLETLTAVDMRGAV 55

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++     +  RS+   LS  ++F ++L +      + +  +R  K+  +LP+AL+   A 
Sbjct: 56  ARAHAGGLSARSIAHRLSAWRAFYRWLAQHVEMPANPVAAVRAPKRPKTLPKALSVDDAS 115

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP-----------QNIMDD 184
            L+D  L  T+        R+ AIL L Y  GLR++E + L               +   
Sbjct: 116 ALMDAPLADTTE-----GIRDRAILELFYSSGLRLAELIGLDVAYAQADGYRSAGWLDLA 170

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           ++ + ++GKG+K R VP+      A+  +  +    +  +   PLF  +RG  + PGV +
Sbjct: 171 EAEVTVRGKGNKERKVPVGRKAIDALNAWLAVRGEFVRHDPH-PLFLSVRGNRMAPGVVR 229

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  ++ TQIYT+++ +
Sbjct: 230 ERVKRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQ 289

Query: 305 NGGDWMMEIYDQTHPSITQKD 325
           +    + +IYD  HP   ++D
Sbjct: 290 H----LAKIYDSAHPRAKKRD 306


>gi|468715|emb|CAA55226.1| sss [Pseudomonas aeruginosa]
          Length = 302

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 95/310 (30%), Positives = 150/310 (48%), Gaps = 17/310 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  +   +L++L  ER +S  TL  Y  D  + L        EK  +     L    +R 
Sbjct: 1   MRADLDAFLEHLRSERQVSAHTLDGYRRDLLKILALA-----EKAGLSDWNALDTRSLRT 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+++   Q    RSL R LS  +   +YL +           +R  K    LPR L+  +
Sbjct: 56  FVARLHQQGQSSRSLARLLSATRGLYQYLLREGRCRHDPANGLRAPKSPRKLPRTLDADR 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           AL L+D      + E  +I  R+ A+L L Y  GLR+SE + L  + +   +  +R++GK
Sbjct: 116 ALQLLDG-----AVEDDFIARRDQALLELFYSSGLRLSELVGLDLEWLDLKEGLVRVRGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K+R +P+  + R+A+  +  L            +F G  GK L P   Q  +RQ    
Sbjct: 171 GNKVRELPVGKAARQALEAWLPLRTQ--AAPEDGAVFIGRSGKRLTPRAIQLRVRQAGVR 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRHSFA+HLL + GDLR++Q +LGH  ++TTQIYT+++ ++    +  +
Sbjct: 229 -ELGQHLHPHMLRHSFASHLLESSGDLRAVQELLGHADIATTQIYTHLDFQH----LASV 283

Query: 314 YDQTHPSITQ 323
           YD   P   Q
Sbjct: 284 YDAPIPRAKQ 293


>gi|315633490|ref|ZP_07888780.1| tyrosine recombinase XerC [Aggregatibacter segnis ATCC 33393]
 gi|315477532|gb|EFU68274.1| tyrosine recombinase XerC [Aggregatibacter segnis ATCC 33393]
          Length = 296

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 93/313 (29%), Positives = 152/313 (48%), Gaps = 18/313 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  E Q +L  L IER +S  TL +Y+    + +  L     +   IQ  +Q++ + +R 
Sbjct: 1   MQNELQKYLTYLRIERQVSPHTLTNYQHQLVRVIAIL-----QDAGIQQWQQVTLSVVRY 55

Query: 74  FISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            +++   Q  + ++SL   LS ++ FL YL  +     +  + +   K+   LP+ ++  
Sbjct: 56  VLAQSSKQDGLKEKSLALRLSALRRFLSYLVYQGQLKVNPAVGVSAPKQPKHLPKNIDRD 115

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q   L+       +   + ID R+ A++ L Y  GLR+SE   L   +I      +R+ G
Sbjct: 116 QIQLLL------ANDSKEPIDIRDRAMIELFYSSGLRLSELQGLNLNSINLRVREVRVIG 169

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG+K RIVPL      AI ++  +    L       LF    G  ++    Q  + +   
Sbjct: 170 KGNKERIVPLGRYASHAIQQWLKVR--LLFNPKDDALFVSQLGNRMSTRTIQMRLERWGI 227

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    + +
Sbjct: 228 RQGLNSHLNPHKLRHSFATHMLEASSDLRAVQELLGHSHLSTTQIYTHLNFQH----LAD 283

Query: 313 IYDQTHPSITQKD 325
           +YD  HP   +K 
Sbjct: 284 VYDAAHPRAKRKK 296


>gi|313206906|ref|YP_004046083.1| tyrosine recombinase xerd [Riemerella anatipestifer DSM 15868]
 gi|312446222|gb|ADQ82577.1| tyrosine recombinase XerD [Riemerella anatipestifer DSM 15868]
 gi|325335657|gb|ADZ11931.1| XerD [Riemerella anatipestifer RA-GD]
          Length = 303

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 156/305 (51%), Gaps = 15/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q++   L+ E+ LS  T+ +Y  D ++   F     E K+   +   +SY +I+ ++ +
Sbjct: 7   IQDFANALKFEKNLSNNTIDAYTRDIKKLQYF----AENKLNDTSALDISYEQIQEYLYQ 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                  +RS  R +S IK+F K+L + ++  ++    +   K    LP  L+ ++  +L
Sbjct: 63  ISKNYTNERSQSRWISSIKAFFKFLHEDELRADNPARLLETPKLGLYLPDTLSFEEIESL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++        +T  +  RN  I+  LYGCGLR+SE + L   N+  ++  + + GKG K 
Sbjct: 123 IE-----AIDKTTSLGKRNHTIIETLYGCGLRVSELVELKISNLNFEEEFIIVDGKGGKT 177

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R+VPL     + I +Y      ++ +N +    LF   RG  L   +    I+ L     
Sbjct: 178 RLVPLAQYTAELIKDYLLEVRSEIKINPKHSDILFLNRRGSKLTRVMVFIIIKDLALQAN 237

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + + HT RHSFATHLL NG DLR IQ +LGH  ++TT+IYT++++++    + E   
Sbjct: 238 IKKNISPHTFRHSFATHLLKNGADLRYIQEMLGHSSITTTEIYTHLDNED----LRETIM 293

Query: 316 QTHPS 320
           + HP 
Sbjct: 294 KYHPR 298


>gi|325925497|ref|ZP_08186888.1| tyrosine recombinase XerD subunit [Xanthomonas perforans 91-118]
 gi|325544089|gb|EGD15481.1| tyrosine recombinase XerD subunit [Xanthomonas perforans 91-118]
          Length = 323

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 90/326 (27%), Positives = 147/326 (45%), Gaps = 24/326 (7%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
              LP + + +     + +L     E+G+++ TL+SY  D      +        + I  
Sbjct: 13  ARQLPPVQAAD-ASVIERFLDRFWAEQGVARQTLESYRRDLEGLARWRDGAHGGLLGI-- 69

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
                   +  ++  R       RS  R LS +++F     +  + ++     +   +  
Sbjct: 70  ----DRAALFDYLRWRTQANYSPRSTARLLSTLRAFYGLCLRDGVRSDDPTTLIDPPQLP 125

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            SLP+AL E Q   L+                R+ A+L L+Y  GLR+SE ++L    + 
Sbjct: 126 RSLPKALTESQIEALL-----AAPDVDTPAGLRDRAMLELMYAAGLRVSELVNLPAVGVN 180

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-------QLPLFRGIRG 235
             Q  LR+ GKG K R+VPL    +  +  Y       L  N        Q+PLF     
Sbjct: 181 LRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARPLLAANTPVAAVDGQVPLFIDAAR 240

Query: 236 KPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           +PL+   F   +++     G+ P + + H LRHSFATHLL++G DLR++Q +LGH  LST
Sbjct: 241 QPLSRQQFWALVKRYAAVAGIDPDTVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLST 300

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPS 320
           TQIYT V  ++    + +++   HP 
Sbjct: 301 TQIYTLVARQH----LQKLHASHHPR 322


>gi|240127425|ref|ZP_04740086.1| putative site-specific recombinase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268685800|ref|ZP_06152662.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-93-1035]
 gi|268626084|gb|EEZ58484.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-93-1035]
          Length = 305

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 85/309 (27%), Positives = 146/309 (47%), Gaps = 13/309 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L+N+  E G S+ T+ +Y  D  +    LA    E       + LS  +  A + +
Sbjct: 10  FDAYLENIVRE-GKSEHTVAAYRRDLEELFALLAQMPSEDAG-GVPQDLSRRDFTAALRR 67

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + +  R+L R LS  + +  +L KR +       +++  K+   +P+AL ++    +
Sbjct: 68  LSQRGLDGRTLARKLSAWRQYCAWLVKRGLMRADPTADIKPPKQPERVPKALPQEWLNRM 127

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D  +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GKG K 
Sbjct: 128 LDLPV----DGGDPLAVRDYALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQ 183

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R VPL     +A+  Y  L     +      LF G  G  L+    Q+ +       G  
Sbjct: 184 RQVPLTGKSVEALKNYLPLRQTASDGK---ALFTGRNGTRLSQRQIQKRLESWAAQYGDG 240

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +YD+ 
Sbjct: 241 RHVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEA 296

Query: 318 HPSITQKDK 326
           HP   ++D+
Sbjct: 297 HPRAKRQDE 305


>gi|77461722|ref|YP_351229.1| site-specific tyrosine recombinase XerC [Pseudomonas fluorescens
           Pf0-1]
 gi|123602828|sp|Q3K4R6|XERC_PSEPF RecName: Full=Tyrosine recombinase xerC
 gi|77385725|gb|ABA77238.1| tyrosine recombinase [Pseudomonas fluorescens Pf0-1]
          Length = 299

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 86/310 (27%), Positives = 148/310 (47%), Gaps = 17/310 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++   + ++L  ER +S  TL +Y  D  + L +       K  I + + L    +R+
Sbjct: 1   MERQLDAYCEHLRSERQVSPHTLSAYRRDLDKVLGWCI-----KQNIGSWQALDIQRLRS 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            I++   Q    RSL R LS ++    YL +  +        +   K    LP+ L+  +
Sbjct: 56  LIARLHAQGQSSRSLARLLSAVRGLYHYLNRECLCDHDPATGLAPPKGERRLPKTLDTDR 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           AL L++      + E  ++  R+ AIL L Y  GLR+SE   L    +      +++ GK
Sbjct: 116 ALQLLEG-----AVEDDFLARRDQAILELFYSSGLRLSELTGLNLDQLDLADGMVQVLGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R++P+    R+A+ ++  L    L       +F   +G+ L P   Q  ++     
Sbjct: 171 GSKTRLLPVGKKAREALEQWLPLR--ALTNPSDDAVFVSQQGRRLGPRAIQVRVKLAGER 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L  +   H LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +
Sbjct: 229 -ELGQNLHPHMLRHSFASHLLESSQDLRAVQELLGHSDIKTTQIYTHLDFQH----LAAV 283

Query: 314 YDQTHPSITQ 323
           YD  HP   +
Sbjct: 284 YDSAHPRAKR 293


>gi|325129523|gb|EGC52350.1| tyrosine recombinase XerC [Neisseria meningitidis OX99.30304]
 gi|325135646|gb|EGC58263.1| tyrosine recombinase XerC [Neisseria meningitidis M0579]
          Length = 305

 Score =  249 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 84/313 (26%), Positives = 146/313 (46%), Gaps = 13/313 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
                  +L+N+  E G S+ T+ +Y  D  +    LA    E       + LS  +  A
Sbjct: 6   FAAHFDAYLENIVRE-GKSEHTVAAYRRDLEELFALLAQMPSEDAG-GVPQDLSRRDFTA 63

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            + +   + +  R+L R LS  + +  +L +R +       +++  K+   +P+AL ++ 
Sbjct: 64  ALRRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEW 123

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++D  +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GK
Sbjct: 124 LNRMLDLPV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGK 179

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R V L     +A+  Y  L     +      LF G  G  L+    Q+ + Q    
Sbjct: 180 GRKQRQVSLTGKSVEALKNYLPLRQTASDGK---ALFTGRNGTRLSQRQIQKRLAQWAAQ 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G     + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +
Sbjct: 237 NGDGRHVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARL 292

Query: 314 YDQTHPSITQKDK 326
           YD+ HP   ++D+
Sbjct: 293 YDEAHPRAKRQDE 305


>gi|154483615|ref|ZP_02026063.1| hypothetical protein EUBVEN_01319 [Eubacterium ventriosum ATCC
           27560]
 gi|149735525|gb|EDM51411.1| hypothetical protein EUBVEN_01319 [Eubacterium ventriosum ATCC
           27560]
          Length = 295

 Score =  249 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 78/306 (25%), Positives = 144/306 (47%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + ++  L  ++  S  T  SY+ D  +F  +L        +I+ I+ ++  ++  +I  
Sbjct: 5   IEEFILQLHTKKDTSSNTEISYKRDLTKFFEYLNI-----GSIEEIKNITKHDLEGYIKH 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    ++ R+++ IK+F  YL   +I   +  + ++  K    +P  L   Q   L
Sbjct: 60  LSDIGRATTTISRNVASIKAFFAYLYDEEIMKSNPSVGLKAPKIIKKVPEILTVSQVDAL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++        +    + R+ A+L LLY  G+R++E ++L   ++   Q  +    +    
Sbjct: 120 LEQ-----PSKNSPKELRDKAMLELLYATGMRVTELITLKMDDVNLAQEYVVCHDRKK-E 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL--FRGIRGKPLNPGVFQRYIRQLRRYLG 255
           RIVP     +KA++ Y       L  + +  +  F   +G  ++   F + I+   +  G
Sbjct: 174 RIVPFGSDAKKALVRYITDGREYLLGDNEDSVIMFPNCQGGAMSRQGFWKLIKMYGKKAG 233

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFA+HL+ NG DL+S+Q +LGH  +STTQIY      +G   + E+Y 
Sbjct: 234 IETELTPHTLRHSFASHLVENGADLKSVQEMLGHSDISTTQIY----MTSGNKRVREVYA 289

Query: 316 QTHPSI 321
           + HP  
Sbjct: 290 KAHPKA 295


>gi|239833075|ref|ZP_04681404.1| tyrosine recombinase XerD [Ochrobactrum intermedium LMG 3301]
 gi|239825342|gb|EEQ96910.1| tyrosine recombinase XerD [Ochrobactrum intermedium LMG 3301]
          Length = 313

 Score =  249 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 90/316 (28%), Positives = 140/316 (44%), Gaps = 20/316 (6%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             +N+L+ +  ERG ++ TL+SY  D       +A           + +     +R+ I 
Sbjct: 8   AIENFLEMMSAERGAARNTLESYRRDLEAVAEAMAARG------VNLAEAGADHVRSAID 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               +     S  R LS ++ F ++L       +     +   KK   LP+ ++ +    
Sbjct: 62  AMAAEGFAATSQARRLSALRQFFRFLYSEGYRQDDPTGTVDAPKKQKPLPKIMSVENVTR 121

Query: 137 LVDNVLLHTSHETKWID--------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+D  +L         D         R  A+L  LY  GLR+SE + L       D   L
Sbjct: 122 LLDRAVLEADEPGGPADLTSDRLRALRLHALLETLYATGLRVSELVGLPVTVARTDHRFL 181

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYI 247
            ++GKG K R+VPL P  R+A+  +  L       +    LF        L   VF R +
Sbjct: 182 LVRGKGSKERMVPLSPKAREALQRFLALRDSLPGSDDNPWLFPAFSESGHLARQVFAREL 241

Query: 248 RQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           + L    GL  S  + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V  +  
Sbjct: 242 KGLAARAGLSASAVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER- 300

Query: 307 GDWMMEIYDQTHPSIT 322
              + ++  + HP   
Sbjct: 301 ---LHKLVSEHHPLAD 313


>gi|308233786|ref|ZP_07664523.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829]
 gi|328943765|ref|ZP_08241230.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829]
 gi|327491734|gb|EGF23508.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829]
          Length = 319

 Score =  249 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 94/321 (29%), Positives = 154/321 (47%), Gaps = 25/321 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + IERG S  TL SY+ D   +L FL  +      I     ++   + A+I+  
Sbjct: 9   EEYLNYVLIERGYSVHTLHSYDHDLTLYLSFLQSH-----DIDDPAYITREIVEAYIAHL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   +++R++S IK F K++   +I       N++  KKS  LP  L + Q + L+
Sbjct: 64  FHEGMSSSTVQRAVSSIKGFHKFMVVEQICENHPTTNLKLPKKSFHLPDVLTQDQIIHLL 123

Query: 139 DN----VLLHTSHETKWID---------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           D+     LL     T              R+ AIL +LYGCGLR+SE   L   +++   
Sbjct: 124 DDPFKPQLLPAPKLTARKALSLKPQACFYRDKAILEMLYGCGLRVSELCGLNQGDVLVSD 183

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVF 243
             +R+ GKG K R+VP L +  ++   Y       L  +      +F  +RG  ++    
Sbjct: 184 ELVRVFGKGSKERLVPCLGTALESYQNYCTKWRALLACSPKTTDAVFLSVRGTRISRQAV 243

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              + +   Y+G+      HTLRHS+ATH+L  G +LR +Q +LGH  +STTQ+YT+++ 
Sbjct: 244 FSLVERYGSYVGI-KGLHPHTLRHSYATHMLEGGMNLRIVQELLGHASISTTQLYTHIDL 302

Query: 304 KNGGDWMMEIYDQTHPSITQK 324
            +    +   Y   HP    K
Sbjct: 303 TH----IRSEYMAAHPRAQIK 319


>gi|78189085|ref|YP_379423.1| tyrosine recombinase XerD [Chlorobium chlorochromatii CaD3]
 gi|78171284|gb|ABB28380.1| Tyrosine recombinase XerD [Chlorobium chlorochromatii CaD3]
          Length = 304

 Score =  249 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 153/304 (50%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             ++L  L +ER  S  T  SY  D  ++L+F+            I +++   I  F+++
Sbjct: 12  LNSFLNYLIVERNFSANTRSSYHNDLHRYLLFVQEQ------ATPIAEITSKVIDRFLAE 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +   S+ R++S I+SF K+L   ++++ +    +   KK++ LP  LN  + L L
Sbjct: 66  LVALGLETTSMARNISTIRSFHKFLHNERLSSNNPAERLHLPKKAHYLPAVLNLSETLAL 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++   +     T  +  R+ A+L LLY  G+R +E +S+  +++  D   +RI GKG K 
Sbjct: 126 LEAPSIMQPAPTYAL--RDRAMLELLYATGVRATELISIQQEHLYSDAGFIRIFGKGSKE 183

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  S    +  Y   L    +  +    LF   RG  L+       ++      G+
Sbjct: 184 RLVPIGASATLWVQRYQKELRVQLVKAHSNDFLFLNSRGGKLSRMSLFEMVKTYSVVAGI 243

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S + HTLRH+FATHL+  G DLR++Q +LGH  + TTQIYT+++      ++ E++  
Sbjct: 244 TKSISPHTLRHTFATHLIEGGADLRAVQEMLGHSSIVTTQIYTHLD----RSFIKEVHKT 299

Query: 317 THPS 320
            HP 
Sbjct: 300 FHPR 303


>gi|172062036|ref|YP_001809688.1| site-specific tyrosine recombinase XerC [Burkholderia ambifaria
           MC40-6]
 gi|171994553|gb|ACB65472.1| tyrosine recombinase XerC [Burkholderia ambifaria MC40-6]
          Length = 306

 Score =  249 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 87/321 (27%), Positives = 159/321 (49%), Gaps = 29/321 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                +L NL+  R LS+ TL++Y  +  +     A         + +  L+  ++R  +
Sbjct: 4   DPIAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAG--------RPLDTLTAVDMRGAV 55

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++     +  RS+   LS  ++F ++L +      + +  +R  K+  +LP+AL+   A 
Sbjct: 56  ARAHAGGLSARSISHRLSAWRAFYRWLAQHIEMPANPVAAVRAPKRPKTLPKALSVDDAS 115

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-----------MDD 184
            L+D  L  T+        R+ AIL L Y  GLR++E + L  +                
Sbjct: 116 ALMDAPLAGTTE-----GIRDHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLA 170

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           ++ + ++GKG+K R VP+      A+  +  +    +  +   PLF  +RG  + PGV +
Sbjct: 171 EAEVTVRGKGNKERKVPVGRKAIDALNAWLAVRGEFVKHDPH-PLFVSVRGNRMAPGVVR 229

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  +S TQ+YT+++ +
Sbjct: 230 ERVKRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQ 289

Query: 305 NGGDWMMEIYDQTHPSITQKD 325
           +    + +IYD  HP   ++D
Sbjct: 290 H----LAKIYDSAHPRAKKRD 306


>gi|332877022|ref|ZP_08444775.1| tyrosine recombinase XerD [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332685130|gb|EGJ57974.1| tyrosine recombinase XerD [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 304

 Score =  249 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 92/306 (30%), Positives = 153/306 (50%), Gaps = 16/306 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++   L ++RGLS+ T  SY  D  + + +L  Y       +T   +    +R F+   
Sbjct: 8   EDFQHYLRLQRGLSENTAVSYGLDIEKLIQYLEKYNI----TETPNNIGEDTLRQFV-YE 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +  RS  R +S +K F KY+   K   +  +  + + K    LP  L+ ++   ++
Sbjct: 63  VGKGLNARSQARLISSLKGFFKYMMYEKNREDFPMEIIESPKIGMKLPDTLSLQEIDAML 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            ++ L T         RN AI+  LY CGLR+SE +SL   ++  ++  +R+ GKG K R
Sbjct: 123 ASIDLSTEE-----GHRNKAIIETLYACGLRVSELVSLRLSDLFFEEDFIRVMGKGSKQR 177

Query: 199 IVPLLPSVRKAILEYYDLCPFDLN--LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           ++P+    +K I  Y D     L      +  +F   RGK L   +    +RQ+   +GL
Sbjct: 178 LIPIEHYTQKQISHYIDNQRKSLKIAKGNEDYVFLNRRGKQLTRAMIFTIVRQVAENIGL 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HT RHSFATHLL NG +LR+IQ +LGH  ++TT+IY +V       ++ E+ ++
Sbjct: 238 KKKISPHTFRHSFATHLLENGANLRAIQMMLGHENITTTEIYVHV----EKSYLREVLEK 293

Query: 317 THPSIT 322
            HP   
Sbjct: 294 FHPRQK 299


>gi|94969888|ref|YP_591936.1| tyrosine recombinase XerD subunit [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551938|gb|ABF41862.1| tyrosine recombinase XerD subunit [Candidatus Koribacter versatilis
           Ellin345]
          Length = 313

 Score =  249 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 88/312 (28%), Positives = 160/312 (51%), Gaps = 14/312 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  +++L  L +E+GLS+L++ +Y  D +QF  FLA         +++      ++R F+
Sbjct: 9   RLLRDFLDYLRVEKGLSRLSVSAYSKDMQQFAEFLAKRK------RSLDAAKRQDVRDFL 62

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
               + ++  R++ R LS  + F KYL   +       LN+ + ++   LP++L+  + L
Sbjct: 63  DSLFSNQLDGRTVARKLSSSRQFYKYLLLDRRIEHDPTLNIESPRQWKVLPKSLSADEVL 122

Query: 136 TLVD-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             +     +  + E++ +  R+ A+L + Y   LR+SE + +  ++   D   + ++GKG
Sbjct: 123 QTLQGPPRVLDTKESQALALRDRAMLEVFYAGALRVSEMIGVRMEDAKLDLGYMMVRGKG 182

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRY 253
           DK RIVPL  S   A+  Y +     L      P LF G   + L+     + +    + 
Sbjct: 183 DKERIVPLGQSALVAVKSYLESGREVLCAGKTSPILFVGKGCRKLSRQRVWQMVSAASQA 242

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G     + H LRHS ATH++ NG DLR++Q+ILGH  +STTQIYT++      D + ++
Sbjct: 243 SG--RHASPHMLRHSCATHMVENGADLRTVQTILGHADISTTQIYTHL----ALDRLKQV 296

Query: 314 YDQTHPSITQKD 325
           +   HP   +++
Sbjct: 297 HRTFHPRSKRRN 308


>gi|229817402|ref|ZP_04447684.1| hypothetical protein BIFANG_02664 [Bifidobacterium angulatum DSM
           20098]
 gi|229785191|gb|EEP21305.1| hypothetical protein BIFANG_02664 [Bifidobacterium angulatum DSM
           20098]
          Length = 316

 Score =  249 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 88/327 (26%), Positives = 148/327 (45%), Gaps = 25/327 (7%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +      K  + +   L   RGLS  TL+SY  D    L +L     E   I+ + +++ 
Sbjct: 1   MADCTFEKHIREFETYLGANRGLSGNTLKSYRTDVLDCLTYL-----ESQGIEALDEITI 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++R ++ + R+      S+ R +  ++ F  +  +  I   +    ++  K +++LP  
Sbjct: 56  DDLRGWMGQ-RSPSHARSSMARGVVAVRCFFSWGYEHGIIRTNPASALKTPKIADTLPTV 114

Query: 129 LNEKQALTLVDNVLLHTSH-ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           L+E QA  L+D      +         R++AIL LLY  G+R++E + L   ++     T
Sbjct: 115 LSEDQAERLMDREDETAAQSPDDPKALRDAAILELLYATGIRVAELVGLDIADVDFSNRT 174

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYY-------------DLCPFDLNLNIQLPLFRGIR 234
           +++ GKG+K R+VP       A+  +                       +    LF G+R
Sbjct: 175 VKVTGKGNKQRVVPFGLPAAHAVEAWLKHGRPSVLESCSGMQRTDGDADDAMRALFLGMR 234

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G+ L+  + +R +    R  G+P     H LRHS ATHLL  G DLR +Q +LGH  L T
Sbjct: 235 GRRLDQRMARRVVHDAARRAGVP-DVGPHALRHSAATHLLDGGADLREVQEMLGHSSLKT 293

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           TQ YT+V+ +     +   Y Q  P  
Sbjct: 294 TQRYTHVSIEQ----LAARYRQAFPRA 316


>gi|308051404|ref|YP_003914970.1| tyrosine recombinase XerC [Ferrimonas balearica DSM 9799]
 gi|307633594|gb|ADN77896.1| tyrosine recombinase XerC [Ferrimonas balearica DSM 9799]
          Length = 296

 Score =  249 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 86/308 (27%), Positives = 148/308 (48%), Gaps = 15/308 (4%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             Q +   LE ER  S  T+++Y  +  + L  L     +   +   + L     +A ++
Sbjct: 4   ALQAFRGYLENERQYSAYTVRNYLKELERALPLL-----QAQGLTDWQGLRTQHCQALLA 58

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           K   Q +  RSL  +LS ++  +K+L +    T   ++ ++  K+   LP+ L+  Q   
Sbjct: 59  KLHRQGLSPRSLSLTLSALRQLIKFLLREGTLTHDPMVGVQAPKQGRPLPKNLDVDQVNR 118

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L++       ++   +  R+ A++ L Y  GLR++E ++L    +      +R+ GKG K
Sbjct: 119 LLEL------NDDDPLVIRDRAMMELFYSSGLRLAELVALDCPQLSLTDREVRVMGKGGK 172

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            RI+P+     + + +Y  L P  L       LF   RG  ++    Q  + +  +   L
Sbjct: 173 ERILPVGNKASEWLAKYLALRPALLKGKECAALFLSNRGSRISRRSVQARLTEWGQSQAL 232

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRHSFATHLL    DLR++Q +LGH  LSTTQIYT+++ ++    +  +YD 
Sbjct: 233 DSKVHPHKLRHSFATHLLEASKDLRAVQELLGHANLSTTQIYTHLDFQH----LASVYDT 288

Query: 317 THPSITQK 324
            HP   +K
Sbjct: 289 AHPRAKKK 296


>gi|225573518|ref|ZP_03782273.1| hypothetical protein RUMHYD_01711 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039115|gb|EEG49361.1| hypothetical protein RUMHYD_01711 [Blautia hydrogenotrophica DSM
           10507]
          Length = 294

 Score =  249 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 78/305 (25%), Positives = 145/305 (47%), Gaps = 16/305 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             + ++  L   +  S  T  SYE D  +   +L     E+  +    +++ T++  ++S
Sbjct: 4   AIREFITYLHNIKQTSNNTEISYERDLNKMAAYL-----ERQGVYNPLKVTETDLNGYLS 58

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             R  K    ++ RS++ I++F ++L +     +    N++  K     P  L  ++   
Sbjct: 59  YLRRNKFAASTISRSVASIRAFYQFLFRAHQIVQDPSENLKPPKVEKKTPEILTVEEVDL 118

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+    L T+        R+ A+L LLY  G+R+SE + L   ++  +   +    +G +
Sbjct: 119 LLRQPSLDTAK-----GLRDKAMLELLYATGMRVSELMHLKVSDVNLNLGYVDC-SEGAR 172

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R++P     ++A+++Y +          +   LF    GK ++   F + ++      G
Sbjct: 173 ERVIPFGNVCKRALVQYLEQGREAFQRKGETDILFPNCSGKMMSRQGFWKVLKGYASAAG 232

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFA H+L NG D++S+Q +LGH  +STTQ+Y N+N       M ++Y 
Sbjct: 233 ITTDITPHTLRHSFAAHMLQNGADIKSLQEMLGHSDISTTQMYLNLNMNR----MRDVYM 288

Query: 316 QTHPS 320
           Q HP 
Sbjct: 289 QAHPR 293


>gi|312972864|ref|ZP_07787037.1| tyrosine recombinase XerD [Escherichia coli 1827-70]
 gi|310332806|gb|EFQ00020.1| tyrosine recombinase XerD [Escherichia coli 1827-70]
          Length = 283

 Score =  249 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 87/294 (29%), Positives = 143/294 (48%), Gaps = 17/294 (5%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           + L++ TL +Y  D    + +L           T+      +++A +++R        S 
Sbjct: 4   KNLAENTLNAYRRDLSMMVEWLHHRG------LTLATAQSDDLQALLAERLEGGYKATSS 57

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R LS ++   +YL + K   +    ++ + K    LP+ L+E Q   L+   L+     
Sbjct: 58  ARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQP-- 115

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
              ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG+K R+VPL      
Sbjct: 116 ---LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 172

Query: 209 AILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLR 266
            +  Y     P+ LN      LF   R + +    F   I+      G+     + H LR
Sbjct: 173 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 232

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           H+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q HP 
Sbjct: 233 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQHHPR 282


>gi|255003412|ref|ZP_05278376.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str. Puerto
           Rico]
          Length = 312

 Score =  249 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 113/320 (35%), Positives = 170/320 (53%), Gaps = 14/320 (4%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLI-FLAFYTEEKITIQTIRQLS 67
           + S +LL    NWL  L  ER  S  T+ +YE D   F         E  +++Q +++L 
Sbjct: 1   MGSGDLLSAINNWLCWLREERRYSPNTVAAYERDIMDFYRSVCGEPCERSVSLQEVQELR 60

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
             E R++++ R  Q     S  R++S ++SF +YL  +     S + N+       SLP+
Sbjct: 61  SAEFRSWLADRFKQGKQSASNARAISVVRSFFRYLHHKCGMKSSVVFNISKPIVRRSLPK 120

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L E Q   +++        +  W   R+ A+  LLYGCGLRISEA+++        Q  
Sbjct: 121 VLEEPQMRKVMEE-----PEDLHWTHRRDLAVSALLYGCGLRISEAVNIKF--CDLRQDE 173

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQR 245
           LR+ GKG K R++P+LP VR  I EY   CP       +    +F G+RG  L+   F  
Sbjct: 174 LRVLGKGSKERVIPILPWVRCIIDEYVASCPHQRVHGASSTEYVFVGLRGGRLSRTYFAY 233

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            ++ LRR +GLP +TT HTLRHSFATHL   G D+R +Q +LGH  L+TTQ+YT+++   
Sbjct: 234 RMKGLRRRIGLPETTTPHTLRHSFATHLFLEGADIRVVQELLGHASLATTQVYTHLD--- 290

Query: 306 GGDWMMEIYDQTHPSITQKD 325
             + ++E Y   HP   +K+
Sbjct: 291 -YNSVIENYRGFHPQTIKKN 309


>gi|218767552|ref|YP_002342064.1| putative integrase/recombinase [Neisseria meningitidis Z2491]
 gi|34223069|sp|Q9JW14|XERC_NEIMA RecName: Full=Tyrosine recombinase xerC
 gi|121051560|emb|CAM07858.1| putative integrase/recombinase [Neisseria meningitidis Z2491]
 gi|319409816|emb|CBY90124.1| tyrosine recombinase XerC [Neisseria meningitidis WUE 2594]
          Length = 305

 Score =  249 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 86/313 (27%), Positives = 147/313 (46%), Gaps = 13/313 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
                  +L+N+  E G S+ T+ +Y  D  +    LA    E       + LS  +  A
Sbjct: 6   FAAHFDAYLENIVRE-GKSEHTVAAYRRDLEELFALLAQMPSEDAG-GVPQGLSQRDFTA 63

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            + +   + +  R+L R LS  + +  +L KR +       +++  K+   +P+AL ++ 
Sbjct: 64  ALRRLSQRGLNARTLARKLSSWRQYCAWLVKRGLLHTDPTADIKPPKQPERVPKALPQEW 123

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++D  +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GK
Sbjct: 124 LNRMLDLPV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGK 179

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R VPL     +A+  Y  L     +      LF G  G  L+    Q+ + Q    
Sbjct: 180 GRKQRQVPLTGKSVEALKNYLPLRQTASDGK---ALFTGRNGTRLSQRQIQKRLAQWAAQ 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G     + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +
Sbjct: 237 NGDGRHVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARL 292

Query: 314 YDQTHPSITQKDK 326
           YD+ HP   ++D+
Sbjct: 293 YDEAHPRAKRQDE 305


>gi|37528455|ref|NP_931800.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36787893|emb|CAE17010.1| integrase/recombinase [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 303

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 77/311 (24%), Positives = 148/311 (47%), Gaps = 17/311 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +LL+  + +L+ L +ER LS +T+  Y          +      ++ +   + L   ++R
Sbjct: 7   QLLEPIEAFLRYLRVERRLSPVTITHYRRHLATLAEMVL-----EMGVSQWQDLDPAKVR 61

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
             +++ R   +   +L   LS ++SFL +   +   + +    +        LP+ ++  
Sbjct: 62  MLVTRSRRAGLQSANLALRLSSLRSFLDWQVIQGEISVNPSKTVSTPGTKRHLPKNIDVD 121

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L++            +  R+  +L ++YG GLR+SE + L  Q++  +   + + G
Sbjct: 122 EVNQLLNINF------NDPLSVRDRTMLEVMYGAGLRLSELVGLDCQHLDLESGEVWVSG 175

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R VPL  +  + +  +      +L       +F   RG+ ++    Q+   Q   
Sbjct: 176 KGSKERKVPLGHTAVEWLNRWL--AMRELFEPEDNAVFVSKRGRRISTRNVQKRFAQWGI 233

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+      H LRHSFATH+L + GDLR++Q +LGH  LS+TQIYT+++ ++    + +
Sbjct: 234 RQGMSSHIHPHKLRHSFATHILESSGDLRAVQELLGHASLSSTQIYTHLDFQH----LTK 289

Query: 313 IYDQTHPSITQ 323
           +YD  HP   +
Sbjct: 290 VYDVAHPRAKR 300


>gi|121604082|ref|YP_981411.1| tyrosine recombinase XerD [Polaromonas naphthalenivorans CJ2]
 gi|120593051|gb|ABM36490.1| tyrosine recombinase XerD subunit [Polaromonas naphthalenivorans
           CJ2]
          Length = 300

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 147/304 (48%), Gaps = 14/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              ++  L +E GLS+ TL +Y  D   +  +L    ++    + +      +++A+ S 
Sbjct: 9   IDAFIDALWLEDGLSRNTLAAYRRDLSLYAGWLHAKEQQH---RKLDDTDEDDLKAYFSF 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S  R L+  K + ++  +  +      L +++ K++  +P+ ++E Q   L
Sbjct: 66  RHAAT-KATSANRCLTVFKRYFRWALRENLIAADPTLKLQSAKQALRVPKVMSEAQVDAL 124

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L    +   +  R+ A+L L+Y  GLR+SE + L   ++  ++  LR+ GKG   
Sbjct: 125 -----LAAPDDDTPLGLRDRAMLELMYASGLRVSELVGLKTFHVGLNEGALRVMGKGSAE 179

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP     R+ I+ Y     P  L       LF    G  ++  +F   +++     G+
Sbjct: 180 RLVPFGQVAREWIVRYIAESRPAILGGQQTDDLFVTGHGHGMSRVMFWMLVKKYALLAGI 239

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR++Q +LGH  +STT IYT+V  +     +  I+ +
Sbjct: 240 HSPLSPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVARER----LKSIHAE 295

Query: 317 THPS 320
            HP 
Sbjct: 296 HHPR 299


>gi|328954140|ref|YP_004371474.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109]
 gi|328454464|gb|AEB10293.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109]
          Length = 310

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 154/305 (50%), Gaps = 18/305 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++ ++L IER L+  T+++Y  D  QF+ F  +         ++ +L+Y ++RAF+++R 
Sbjct: 19  DFSRHLRIERSLAAHTVRNYLSDIGQFMEFWNYRRPGH----SLGELTYQDLRAFLAERH 74

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  S+ R L+ +++F K+L ++ + + +        K    LP+ L   +   L++
Sbjct: 75  RLNCK-TSIARKLAALRTFCKFLTRQGLLSHNIAALTPTPKLEARLPKFLTIDEVFHLLE 133

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                 +     +  R+ AIL L Y  GLR++E + L   N+   Q   +++GKG K R+
Sbjct: 134 Q-----TWGQTVLAVRDRAILELFYSGGLRVAELVGLNLDNLDLPQHLAKVRGKGGKERL 188

Query: 200 VPLLPSVRKAILEYYDLCPF----DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           V +     + +  Y  +       D  ++ +  +F   RG  L      R + +     G
Sbjct: 189 VIIGRQALQTLNSYLLVRRELITPDSPVSGREAVFLNYRGGRLTSRSVARLVEKWAIKAG 248

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L    + H LRH+FATHLL    DLR++Q +LGH +LSTTQ Y +VN     D++ME+YD
Sbjct: 249 LGQPLSPHGLRHTFATHLLEGKADLRAVQELLGHAQLSTTQKYLHVN----LDYLMEVYD 304

Query: 316 QTHPS 320
           + HP 
Sbjct: 305 KAHPR 309


>gi|332716418|ref|YP_004443884.1| tyrosine recombinase xerD [Agrobacterium sp. H13-3]
 gi|325063103|gb|ADY66793.1| tyrosine recombinase xerD [Agrobacterium sp. H13-3]
          Length = 331

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 89/323 (27%), Positives = 150/323 (46%), Gaps = 27/323 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L+ +  ERG +  TL SYE D      FL          Q++ + +  ++ A+++ 
Sbjct: 14  LESFLEMMSAERGAAANTLSSYERDLSDLREFLGGRG------QSLMEAATADLSAYLTH 67

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             TQ     S  R LS ++ F ++L    +  +     +   KK  +LP+ ++      L
Sbjct: 68  LSTQGFAATSQARRLSSMRQFYRFLYSEGLRGDDPTGTIDAPKKGLTLPKTMSVADVTKL 127

Query: 138 VDNVLLHTS--HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +       +     +    R   +L LLY  G+R+SE +SL  + +  +   L I+GKG+
Sbjct: 128 LGIAAEEAALTGPGQLARIRMHLLLELLYATGMRVSELVSLPVKVLRQEGRFLMIRGKGN 187

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-------------LFR-GIRGKPLNPG 241
           K R+V L  +  +A+ +Y       +    + P             LF    +   L   
Sbjct: 188 KDRMVLLSRAAIEAMEKYDAARKSLVPEKSRTPASPKKADSPESPWLFPSNSKEGHLPRQ 247

Query: 242 VFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           VF R ++ +    GL P + + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+
Sbjct: 248 VFARDLKDIAIRAGLNPSAVSPHVLRHAFASHLLQNGADLRAVQELLGHSDISTTQIYTH 307

Query: 301 VNSKNGGDWMMEIYDQTHPSITQ 323
           V  +     + E+    HP   Q
Sbjct: 308 VLEER----LQELVQTHHPLAKQ 326


>gi|288926604|ref|ZP_06420520.1| integrase/recombinase XerD [Prevotella buccae D17]
 gi|288336626|gb|EFC74996.1| integrase/recombinase XerD [Prevotella buccae D17]
          Length = 304

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 82/303 (27%), Positives = 153/303 (50%), Gaps = 16/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L++ER  S+ T+++Y  D    + FL       +  +       +++  F +  
Sbjct: 13  KAYLRYLKLERNYSENTVEAYRHDLGYLMAFLKERGLAAVDAE------LSDMEEFAATL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +  RS  R LSG++SF ++L+            + + +    LP  L+ ++   L 
Sbjct: 67  HEKNVSARSQSRILSGVRSFYRFLRLDGYMETDPTELLGSPQTGEHLPEYLSTEEVDLLE 126

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            ++ L     +KW   RN AI+ +L+ CGLR+SE ++L   ++  ++  +R+ GKG+K R
Sbjct: 127 GSIDL-----SKWEGQRNKAIIEVLFSCGLRVSELVNLKFSDLFPEEKFVRVIGKGNKER 181

Query: 199 IVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+  S  + +  +Y       +    +  +F   RG  L   +    I++     G+ 
Sbjct: 182 LVPISSSALRQLELWYMDRNLMTIKPGEEDYVFLNRRGHHLTRTMILIMIKRQAVAAGIK 241

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT++YT++ + +    ++E     
Sbjct: 242 KTISPHTLRHSFATALLKGGADLRAIQAMLGHESIGTTEVYTHLETSDLRREILE----H 297

Query: 318 HPS 320
           HP 
Sbjct: 298 HPR 300


>gi|317504379|ref|ZP_07962363.1| integrase/recombinase XerD [Prevotella salivae DSM 15606]
 gi|315664501|gb|EFV04184.1| integrase/recombinase XerD [Prevotella salivae DSM 15606]
          Length = 307

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 87/308 (28%), Positives = 147/308 (47%), Gaps = 16/308 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+ L++ER  S  TL +Y  D    + +      + + +Q        +++ F + 
Sbjct: 12  LKAYLRYLKLERNYSPNTLDAYSHDIAWLIDYCKREERDLLGLQ------LEDLQHFAAS 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                IG RS  R LSGI+SF ++L             + +      LP  L+ ++   L
Sbjct: 66  LHEFHIGPRSQSRILSGIRSFFRFLLLDGYIDNDPTELLESPVLGQHLPEVLSTEEVDRL 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            +++ L     +K    RN  I+ +L+ CGLR+SE + L    +  D   +R+ GKG K 
Sbjct: 126 EESIDL-----SKPEGQRNRTIIEVLFSCGLRVSELVHLKLSELYLDDGFIRVLGKGSKE 180

Query: 198 RIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+ P   K +  ++      D+    +  +F   RG  L   +    I++     G+
Sbjct: 181 RLVPISPRAIKELRLWFADRVHLDIKPGEEDFVFLNRRGHHLTRTMILIMIKRQAEEAGI 240

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT+IYT++++      + E    
Sbjct: 241 KKTISPHTLRHSFATALLQGGADLRAIQAMLGHEHIGTTEIYTHIDT----TTLREEILN 296

Query: 317 THPSITQK 324
            HP   +K
Sbjct: 297 HHPRNMKK 304


>gi|50954349|ref|YP_061637.1| site-specific tyrosine recombinase XerD [Leifsonia xyli subsp. xyli
           str. CTCB07]
 gi|50950831|gb|AAT88532.1| integrase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 301

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 95/312 (30%), Positives = 148/312 (47%), Gaps = 20/312 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            +   +L+++ IERGLS  T+ +Y  D   +  +LA        +     ++   + A++
Sbjct: 5   ADVDAYLRHVAIERGLSANTVAAYRRDLAVYAGWLAVEQ-----VTQTAAVTPATVSAYL 59

Query: 76  SKRRTQK---IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
               T+    +   SL R LS ++SF ++L +    T     ++R  K  + LP+A+   
Sbjct: 60  QHLATRGESPLTASSLARMLSTVRSFHRFLLEEGRVTVDAAHDIRPPKLPSRLPKAIGVD 119

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q   L     L  +      D R+ A+L L+Y  G R+SEA+ L     + D   +R+ G
Sbjct: 120 QVAAL-----LAATDGDDLADLRDKALLELMYATGARVSEAVGLNVD-DVIDTDVVRLTG 173

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQL 250
           KG K RIVPL    R A+  Y       L+   +    LF G+RG  L+       IR  
Sbjct: 174 KGAKQRIVPLGSYARAAVSAYLVRARPTLSTRGRATPALFLGMRGARLSRQNVWLIIRAA 233

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                L +  + H LRHSFATHLL+ G D+R +Q +LGH  ++TTQ+YT V      D +
Sbjct: 234 ADRADLTVEVSPHILRHSFATHLLAGGADVRVVQELLGHSSVATTQLYTLVT----ADTL 289

Query: 311 MEIYDQTHPSIT 322
            ++Y   HP   
Sbjct: 290 RDVYVSAHPRAR 301


>gi|325106888|ref|YP_004267956.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM
           5305]
 gi|324967156|gb|ADY57934.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM
           5305]
          Length = 315

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 143/299 (47%), Gaps = 15/299 (5%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
             L  E G+++ ++++Y  D  QFL +L            +R+L+  ++ A++     + 
Sbjct: 30  HYLRAECGMAENSVKAYIRDLEQFLDWLKKKHWH-----DVRELTLQQLTAYLKHLHDEG 84

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +   ++ R L  +K+F ++L    + T+S    + + K    LP+ L+ ++   L     
Sbjct: 85  LKASTVARKLVALKTFFRFLVLEGVITDSKAELLNSPKLWQYLPKVLSPEKVDAL----- 139

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
           L           R+ AIL +LY  G R SE   LT   +  D+   + +GKG+K RIV L
Sbjct: 140 LTAPSWEDEFPHRDRAILSVLYATGCRASEVTDLTLDQVRLDEGYCKCRGKGNKERIVSL 199

Query: 203 LPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            P    A+  Y     P     + Q  LF    G+PL+     R +++    +G     +
Sbjct: 200 NPVAIAALETYLQRERPALAARHEQTHLFLSRTGRPLDRLTIWRIVKRYAARIGCSAQVS 259

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
            HTLRHSFATH+L+ G ++R++Q +LGH  + TTQ+YT+V        +  I+   HP 
Sbjct: 260 PHTLRHSFATHMLAGGAEIRALQEMLGHANIRTTQVYTHV----EHSRLKSIHRDCHPR 314


>gi|237717200|ref|ZP_04547681.1| integrase [Bacteroides sp. D1]
 gi|262405968|ref|ZP_06082518.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_22]
 gi|294647940|ref|ZP_06725492.1| tyrosine recombinase XerD [Bacteroides ovatus SD CC 2a]
 gi|294806338|ref|ZP_06765185.1| tyrosine recombinase XerD [Bacteroides xylanisolvens SD CC 1b]
 gi|298479972|ref|ZP_06998171.1| tyrosine recombinase XerD [Bacteroides sp. D22]
 gi|229443183|gb|EEO48974.1| integrase [Bacteroides sp. D1]
 gi|262356843|gb|EEZ05933.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_22]
 gi|292636848|gb|EFF55314.1| tyrosine recombinase XerD [Bacteroides ovatus SD CC 2a]
 gi|294446594|gb|EFG15214.1| tyrosine recombinase XerD [Bacteroides xylanisolvens SD CC 1b]
 gi|295085584|emb|CBK67107.1| tyrosine recombinase XerD subunit [Bacteroides xylanisolvens XB1A]
 gi|298273781|gb|EFI15343.1| tyrosine recombinase XerD [Bacteroides sp. D22]
          Length = 319

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 88/312 (28%), Positives = 148/312 (47%), Gaps = 17/312 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + Q L++E+ LS  TL +Y  D  + + FL            +  +  ++++ F + 
Sbjct: 17  IRKYQQYLKLEKSLSLNTLDAYLTDLDKLMSFLTLEGI------YVLDVCLSDLQRFAAG 70

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I  RS  R LSGIKSF ++L             +   K    LP  L  ++   +
Sbjct: 71  LHDIGIHPRSQARILSGIKSFFRFLILENYLEADPSELLEGPKIGFKLPEVLTVEEIDRI 130

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +          +K    RN AIL  LY CGLR+SE ++L   ++  D+  ++++GKG K 
Sbjct: 131 I-----SAVDRSKAEGQRNRAILETLYSCGLRVSELITLKLSDLYFDEGFIKVEGKGSKQ 185

Query: 198 RIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLG 255
           R+VP+ P     I  Y       ++    +  +F   R    L+  +    I++L +  G
Sbjct: 186 RLVPISPRAINEIKLYITDRNQIEVKKGHEDFVFVSQRRGKGLSRIMIFHMIKELAQKAG 245

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++       ++E   
Sbjct: 246 ITKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIE--- 302

Query: 316 QTHPSITQKDKK 327
             HP   +  K+
Sbjct: 303 -HHPRNIKYRKE 313


>gi|311693141|gb|ADP96014.1| site-specific tyrosine recombinase XerC [marine bacterium HP15]
          Length = 310

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 151/314 (48%), Gaps = 16/314 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +  EL      ++++L  E+  S  T  SY  D  +   +L             ++++  
Sbjct: 1   MPNELTGPLAEFIRHLASEKRHSPRTCDSYHRDLLRLADWLGRS-----GFVAWQRVTNH 55

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++R +++    + +  RS+ R LS  + F ++L + K+ +++  L++R  K    LPR  
Sbjct: 56  DLRRYVATLSREGLSGRSIARHLSATRRFYQFLLREKLASDNPALDIRAPKSGRRLPRVA 115

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  Q   L+D            ++ R+  +  L+Y  GLR++E  SL    +      +R
Sbjct: 116 DVDQLNHLLDG------QPDDPLEVRDLCMFELMYSSGLRLAELASLDLDTVDVRSGEVR 169

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG K R++P+      AI  +        N + +  LF   RG+ L+    Q  + +
Sbjct: 170 VMGKGGKERLLPVGRKAIAAIQAWVPYRAALAN-DGEAALFVSQRGERLSHRSIQARLSR 228

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G       H LRHSFA+H+L + GDLR++Q +LGH  ++TTQ+YT+++ ++    
Sbjct: 229 WGISRGADQKLHPHLLRHSFASHMLESSGDLRAVQELLGHADIATTQVYTHLDFQH---- 284

Query: 310 MMEIYDQTHPSITQ 323
           +  +YDQ+HP   +
Sbjct: 285 LARVYDQSHPRARR 298


>gi|229552209|ref|ZP_04440934.1| site-specific recombinase XerD [Lactobacillus rhamnosus LMS2-1]
 gi|229314431|gb|EEN80404.1| site-specific recombinase XerD [Lactobacillus rhamnosus LMS2-1]
          Length = 298

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 87/307 (28%), Positives = 148/307 (48%), Gaps = 12/307 (3%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +K    + + L +ER  S  T+ +Y  D ++F  FL              ++   +++ +
Sbjct: 1   MKPLAAFQEYLTVERQYSPETVTAYLNDIQEFQAFLKANG----GFTDFSKVDDLDVQTY 56

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++    Q +   S+ R +S ++SF +YL +  +   +    +   K+ + LP+   E + 
Sbjct: 57  LTDLNKQALARTSIARKISSLRSFYRYLVRIDVVKRNPFELVELKKQHHHLPQFFYEAEI 116

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L   V   T      +D RN A+L +LYG G+R+SE  +LT   +  +   L I GKG
Sbjct: 117 QELFKTVEGETP-----LDQRNRALLEVLYGTGIRVSECANLTLNQVDFNTGLLLIHGKG 171

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           +K R VP     ++A+  Y       L   +      +F    G+P+     +  + QL 
Sbjct: 172 NKDRYVPFGRYAQRALQTYLKDGRQTLMNKHDAQHRFVFVNQYGRPITARGIEYILDQLI 231

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +   L  +   H LRHSFATH+L +G DLR++Q +LGH  LSTTQIYT+V   +  +  M
Sbjct: 232 KQTSLTANIHPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYM 291

Query: 312 EIYDQTH 318
           + Y + +
Sbjct: 292 KYYPKHN 298


>gi|183600284|ref|ZP_02961777.1| hypothetical protein PROSTU_03843 [Providencia stuartii ATCC 25827]
 gi|188020074|gb|EDU58114.1| hypothetical protein PROSTU_03843 [Providencia stuartii ATCC 25827]
          Length = 309

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 80/313 (25%), Positives = 152/313 (48%), Gaps = 18/313 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L+ + + +L+ L+IER LS +T+ +Y       +  L      ++ +   RQL  T+ R 
Sbjct: 13  LMIQVEAFLRYLQIERRLSPVTITNYRRQLTVVVEML-----NEMNVSEWRQLDATKARN 67

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             +K R + +   S+   LS ++SF  ++ ++   + + +  +   K    LP+ ++  +
Sbjct: 68  VAAKSRRKGLQAASMALRLSALRSFCDWMVQQDKLSANPVTAVHAPKAKKRLPKNMDVDE 127

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+             +  R+  +L ++YG GLR+SE + L  +++      +R+ GK
Sbjct: 128 VSKLLSM------ESGDPLVVRDRTMLEVMYGAGLRLSELVGLDVRHLDLAMGEVRVMGK 181

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRR 252
           G K R +PL  +    +  + ++   +L       +F   +  K ++    Q+   Q   
Sbjct: 182 GSKERKIPLGKTAVSWLKRWLEMR--ELYEPEDGAVFISTKSGKRISNRNVQKRFEQWGI 239

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+      H LRHSFATH+L + G+LR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 240 KQGVNSHINPHKLRHSFATHILESSGNLRGVQELLGHANLSTTQIYTHLDFQH----LAN 295

Query: 313 IYDQTHPSITQKD 325
           +YD  HP   ++ 
Sbjct: 296 VYDVAHPRAKREK 308


>gi|255689937|ref|ZP_05413612.1| tyrosine recombinase XerD [Bacteroides finegoldii DSM 17565]
 gi|260624543|gb|EEX47414.1| tyrosine recombinase XerD [Bacteroides finegoldii DSM 17565]
          Length = 319

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 90/312 (28%), Positives = 152/312 (48%), Gaps = 17/312 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + Q L++E+ LS  TL++Y  D  + L FL            I  +   +++ F + 
Sbjct: 17  IRKYQQYLKLEKSLSPNTLEAYLTDLDKLLSFLTLEGI------NILDVCLADLQRFAAG 70

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I  RS  R LSGIKSF ++L             + +      LP  L  ++   +
Sbjct: 71  LHDIGIHPRSQARILSGIKSFFRFLIMADYLEADPSELLESPNIGLKLPEVLTVEEIDRI 130

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +      T   +K    RN AIL  LY CGLR+SE ++L   ++  D+  ++++GKG+K 
Sbjct: 131 I-----ATVDRSKAEGQRNRAILETLYSCGLRVSELVNLKLSDLYFDEGFIKVEGKGNKQ 185

Query: 198 RIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLG 255
           R++P+ P     I  Y+      ++    +  +F    RGK L+  +    I++L +   
Sbjct: 186 RLIPISPRAINEIKLYFTDRNQIEVKSGHEDFVFISLRRGKRLSRIMIFHMIKELAQQAS 245

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++       ++E   
Sbjct: 246 ITKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNVLRSEIIE--- 302

Query: 316 QTHPSITQKDKK 327
             HP   +  K+
Sbjct: 303 -HHPRNIKYRKE 313


>gi|313771918|gb|EFS37884.1| tyrosine recombinase XerD [Propionibacterium acnes HL074PA1]
          Length = 306

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 91/312 (29%), Positives = 148/312 (47%), Gaps = 21/312 (6%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           + +++L++L +ERGLS  T+Q+Y  D  ++  +L         I ++ +++  ++  F  
Sbjct: 8   QAEDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLGSR-----GIGSLAEVTRVDVEEFRR 62

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                 +   S+ R +  +++  ++              M    +S  LP+AL+  Q  +
Sbjct: 63  HLDHIGLAPASVTRCVVAVRNLHRFAVGSGQLQADVTAGMSPGTRSRRLPKALSMDQVES 122

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----MDDQSTLRIQG 192
           L     L     +     R++A+L LLYG G R+SE  +L   +I     D    LR+ G
Sbjct: 123 L-----LAAPDTSTVEGLRDAALLELLYGTGARVSEVCALDVDDIRPVLDDPDLGLRLIG 177

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLN--LNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           KGDK RIVPL     KA+  +            N +  L    RG+ L+       IR+ 
Sbjct: 178 KGDKERIVPLGSYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRRA 237

Query: 251 RRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
               GL +   + H+LRHS+ATHLL  G D+R +Q +LGH  ++TTQIYT V      D 
Sbjct: 238 GEAAGLDVEHLSPHSLRHSYATHLLDGGADIRVVQELLGHSSVTTTQIYTLVT----ADH 293

Query: 310 MMEIYDQTHPSI 321
           + E+Y  +HP  
Sbjct: 294 LREVYRSSHPRA 305


>gi|269958529|ref|YP_003328316.1| site-specific tyrosine recombinase [Anaplasma centrale str. Israel]
 gi|269848358|gb|ACZ49002.1| site-specific tyrosine recombinase [Anaplasma centrale str. Israel]
          Length = 312

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 115/314 (36%), Positives = 175/314 (55%), Gaps = 14/314 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI-TIQTIRQLSYTEIR 72
           LL    +WL  L +ER  S  T+ +YE D   F  F+     E++  ++ I++L   E+R
Sbjct: 6   LLSAINDWLCWLRVERKCSPNTVAAYERDIMDFYKFICGEPCERVAGLKDIQELRSAELR 65

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           ++++ R  Q     S  R+++ ++SF +YL ++     S + N+       SLP+ L E 
Sbjct: 66  SWLADRFKQGKQSSSNARAVAVVRSFFRYLHRKCGMNGSVVSNISRPIVRKSLPKVLEES 125

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q   ++            W   R+ A+  LLYGCGLRISEA+++        Q  LR+ G
Sbjct: 126 QIRKVMGEREA-----PHWTHTRDLAVSALLYGCGLRISEAVNVKF--CDLGQDGLRVLG 178

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           KG K R++P+LP VR+AI EY   CP     + +    +F G+RG  L+   F   +R+L
Sbjct: 179 KGSKERVIPVLPWVRRAIDEYVANCPHLRVHSASGTEYIFVGLRGGRLSRTYFAHRMRKL 238

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           RR +GLP +TT HTLRHSFATHL   G D+R +Q +LGH  L+TTQIYT+++     + +
Sbjct: 239 RRRVGLPETTTPHTLRHSFATHLFLEGADIRVVQELLGHASLATTQIYTHLD----YNSV 294

Query: 311 MEIYDQTHPSITQK 324
           +E Y + HP  T+K
Sbjct: 295 IENYREFHPQTTKK 308


>gi|257453533|ref|ZP_05618823.1| tyrosine recombinase XerD [Enhydrobacter aerosaccus SK60]
 gi|257448991|gb|EEV23944.1| tyrosine recombinase XerD [Enhydrobacter aerosaccus SK60]
          Length = 314

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 89/324 (27%), Positives = 150/324 (46%), Gaps = 27/324 (8%)

Query: 7   PEIVSFELLKERQNWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           P  V    L +  +++Q    E   RGL+  T  +Y  D             E    + I
Sbjct: 9   PRQVKALHLHDEPSYIQQFRQELLTRGLATNTRNAYIRDLMLC---------ETTCSKAI 59

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
            +   +++ A ++    Q    RS  R+LS +K F  +        ++   +++  K   
Sbjct: 60  TRWDASDVLACLAALYKQGKTARSQARALSSLKQFFLWQINANQRDDNPCEHIKTPKLGR 119

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           +LP+ L+E     L+      +   +  +  R+ A+  +LY CGLR+SE + L+   +  
Sbjct: 120 ALPKDLSESDVDALL-----ASPDTSTPLGMRDQAMFEVLYACGLRVSELIHLSLSEVNL 174

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL------NLNIQLPLFRGIRGKP 237
           +   L++ GKGDK R+VPL       + +Y  L    L        +    +F   +G  
Sbjct: 175 NAGWLQVTGKGDKTRLVPLGEVAIDVLTDYLTLARPQLCIMKNGRESRCQAVFLTQQGGY 234

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    F   I++  +  G+    + HTLRH+FATHLL++G DLRS+Q +LGH  LSTTQI
Sbjct: 235 MTRQNFWYVIKRYAKQAGIESEISPHTLRHAFATHLLNHGADLRSVQMLLGHSDLSTTQI 294

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSI 321
           YT+V +      + +++ Q HP  
Sbjct: 295 YTHVATAR----LQQLHQQHHPRA 314


>gi|294791028|ref|ZP_06756186.1| tyrosine recombinase XerD [Scardovia inopinata F0304]
 gi|294458925|gb|EFG27278.1| tyrosine recombinase XerD [Scardovia inopinata F0304]
          Length = 318

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 87/326 (26%), Positives = 148/326 (45%), Gaps = 20/326 (6%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           + N LPE  S  L      +L  + +ERGL+  T+++YE D  +++ +L         + 
Sbjct: 8   DSNGLPEAYSTSLSL----FLGYISVERGLAAATVKAYESDLIKYVSWLTHKK-----VT 58

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
              Q+S   +  F++         +S+ R L+ I  + +YL  R          ++  K 
Sbjct: 59  DPGQISQQNVEDFVASLSLAGESQKSIARRLASIHEYHRYLSSRGQIQTDVSQTVKPPKA 118

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           +  LP  L   +   +++  +  T  +T  +  R+ A+L  LY  G R+SEA+ L   ++
Sbjct: 119 AAHLPDVLTIDEVSRMME--MTSTERDTDPVILRDRALLEFLYATGARVSEAVGLNMTDL 176

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGK 236
             D    R+ GKG K R+VPL      A+  Y       L    +       +F   RGK
Sbjct: 177 DLDSRCARLMGKGSKQRLVPLGSYACSALNRYLHGPRQYLQDKARSGPELRAVFLNKRGK 236

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L+       ++       +      HTLRHS ATHL+  G D+R++Q +LGH  ++TTQ
Sbjct: 237 RLSRQSVWEIVQAAANRAHISKEVHPHTLRHSCATHLIRGGADVRTVQELLGHASVTTTQ 296

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSIT 322
           +YT+++ +     ++E Y   HP   
Sbjct: 297 LYTHISPQT----LIETYITAHPRAR 318


>gi|322435169|ref|YP_004217381.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321162896|gb|ADW68601.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 310

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 90/310 (29%), Positives = 150/310 (48%), Gaps = 20/310 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L  ERG S+ T+++Y  + + F  +LA    E+     I  + +  IR ++S    
Sbjct: 11  FLAMLRNERGASEHTVRAYTREVKDFAAYLAGEMGER----GIGAVEHLHIRGYLSVLYA 66

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   S+ R+L+ ++S+ K+L K     ++  L +   K++  LPR  + ++   ++D+
Sbjct: 67  RGLEKSSMARALASVRSWFKWLAKEGKVEQNPALLVSTPKRAQHLPRVPSAEEVNRVMDS 126

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L ++    W + R+  I  LLYGCG+R SE   L   N+      + ++GKG K R+V
Sbjct: 127 --LESADGGTWPE-RDRVIFELLYGCGIRNSELCGLDMGNVQWANDAVLVRGKGKKERLV 183

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLF---------RGIRGKPLNPGVFQRYIRQLR 251
           PL      A+  Y       L    +  L          R      L      R ++ + 
Sbjct: 184 PLGDEAAAAVRAYMPQRAERLAAAGKGGLIGDGALLMNARMRGTCRLTTRSVGRIVKAIA 243

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +  GL      HTLRH+F TH+L +G DLR+IQ +LGH RLSTTQ YT +        + 
Sbjct: 244 QSRGLAADVHPHTLRHAFGTHMLEDGADLRAIQEMLGHERLSTTQRYTQLT----VGQVQ 299

Query: 312 EIYDQTHPSI 321
            +Y+++HP  
Sbjct: 300 RVYEESHPRA 309


>gi|299065844|emb|CBJ37023.1| site-specific tyrosine recombinase [Ralstonia solanacearum CMR15]
          Length = 311

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 78/310 (25%), Positives = 137/310 (44%), Gaps = 21/310 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  Q +   L +E GL++ TL +Y  D   +  +LA         + + Q    ++  + 
Sbjct: 17  EAIQRFCDALWLEDGLARNTLDAYRRDLTLYAQWLAGRG------KALDQTEDADLSDYF 70

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           + R    +   +  R  +  K F ++  +  +        +   K+   +P+ L+E Q  
Sbjct: 71  AARHEDSLA-STANRRRTVFKRFFQWALREHVVNADPTRLLPTAKQPPRVPQTLSEAQVE 129

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KG 194
            L+             +  R+ A++ L+Y  GLR+SE ++L    +  ++  +R+ G KG
Sbjct: 130 ALI-----AAPDVDAPLGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEGVVRVIGGKG 184

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPF----DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            K R+VP        +  Y           L       LF   RG  +    F   I++ 
Sbjct: 185 GKDRLVPFGAEAGDWLRRYLQDGHKGRTALLGQRTADALFVTARGDGMTRQAFWYLIKRY 244

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +   +    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +
Sbjct: 245 AQRADIHAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARER----L 300

Query: 311 MEIYDQTHPS 320
             ++ Q HP 
Sbjct: 301 RTLHAQHHPR 310


>gi|309775658|ref|ZP_07670657.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916564|gb|EFP62305.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53]
          Length = 304

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 89/312 (28%), Positives = 144/312 (46%), Gaps = 21/312 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +LQ ++     S  T  +Y+ D R+F+ FL     +   ++ ++      +  +I+  R
Sbjct: 7   RFLQYMDSLNSGSVHTRDAYQRDIREFISFL-----QAEGVEELQDADRILVMNYIASLR 61

Query: 80  TQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
            +      + + ++ R LS ++SF +YL +     ++  L  +  K+S  +P  L   + 
Sbjct: 62  EKSGVSGEMKNSTIARKLSSLRSFYRYLNEYVGIAQNPFLYFKTPKRSKRIPEFLFYDEM 121

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
            T + +  L T         R+ A+  L+Y CGLR+SEA SL  ++I   +  L I GKG
Sbjct: 122 DTFLSSFALDTPD-----GLRDRAMFELMYACGLRVSEAASLRLRDIDLQERILTITGKG 176

Query: 195 DKIRIVPLLPSVRKAILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           +K RIVP      + +  Y       +         +F   RGK L     Q  ++    
Sbjct: 177 NKQRIVPFYALAGELVERYLQQVRPLWMQPSQEHDIVFINQRGKGLTTRGIQYRMQVAAA 236

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L +    H  RHSFATHLL NG DLR +Q +LGH  LSTTQ+Y +V  +     + +
Sbjct: 237 GCKLQVHVHPHMFRHSFATHLLDNGADLRVVQELLGHSSLSTTQVYVHVTQER----LKK 292

Query: 313 IYDQTHPSITQK 324
            Y   HP   +K
Sbjct: 293 AYTHAHPRAQEK 304


>gi|229496921|ref|ZP_04390628.1| tyrosine recombinase XerD [Porphyromonas endodontalis ATCC 35406]
 gi|229316168|gb|EEN82094.1| tyrosine recombinase XerD [Porphyromonas endodontalis ATCC 35406]
          Length = 313

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 84/327 (25%), Positives = 157/327 (48%), Gaps = 19/327 (5%)

Query: 1   MEGNNLPEIVSF---ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK 57
           M     PE+ ++   E  +  + + ++L++E+ LS  ++ +Y  D  + + +        
Sbjct: 1   MSPLGAPELANWMNTENQRLAEAFKRHLQLEQALSPNSISAYLMDLGKLIAYAEDC---- 56

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
                + Q+ Y  +  F++      I  RS+ R ++G+KSF ++L   +   +     + 
Sbjct: 57  --ALPLDQVEYEHLETFVASLYDCGIAARSIARIIAGVKSFYRFLYVDQYIQKDPTELLE 114

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           + K    LP   + ++      + +L     +K    RN AI+ +LY CGLR+SE   L 
Sbjct: 115 SPKLELHLPTVFSVEEI-----DHILEAIDYSKNDALRNRAIIEVLYSCGLRVSELCHLK 169

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGK 236
             ++  +++ + + GKG K R+VP+ P    A+ +Y       +     +  +F    GK
Sbjct: 170 LGDVHPEEAFVHVYGKGCKERLVPISPVALDALAQYLASPHRPVPKAGQEDYIFLSRLGK 229

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            +        IR L    G+  + + HT RHSFATHLL  G +L++I+ +LGH  +STT+
Sbjct: 230 AIARNSVFDLIRALSEAAGITKTVSPHTFRHSFATHLLDGGANLQAIRLMLGHEDISTTE 289

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSITQ 323
           IYT+++S+     + E   + HP   +
Sbjct: 290 IYTHIDSQT----LREEILRHHPRNKE 312


>gi|225620975|ref|YP_002722233.1| site-specific recombinase XerD [Brachyspira hyodysenteriae WA1]
 gi|225215795|gb|ACN84529.1| site-specific recombinase XerD [Brachyspira hyodysenteriae WA1]
          Length = 297

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 86/309 (27%), Positives = 153/309 (49%), Gaps = 17/309 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L    +E+GLS  TL+SY+ D   +L FL+         ++I + +  +I  F+S+R+ 
Sbjct: 2   YLNYEAVEKGLSSNTLESYKRDIVIYLDFLSR------NKKSILKATRKDIEKFLSERKE 55

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q    R++ R+   I +  K+L      +++   N+  ++    LP +L + +   L+  
Sbjct: 56  QGSKSRTVARNKVSIVNLYKFLVMENYISKNPTDNLEVIRLKRVLPESLTDTEVDDLLAV 115

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                 +E      R+ AI  L+Y  GLR+SE  SL   +I  +   L+I GKG + RIV
Sbjct: 116 H-----NEKTDKGLRDKAIFELMYSSGLRVSEICSLKIDDIFFEGKYLKICGKGKRERIV 170

Query: 201 PLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+       +  Y        +       LF   RG  ++     + +++  +   +  +
Sbjct: 171 PINDRALDILQRYIQTSRVIMVKGKKTSELFLNFRGDKISRVGIWKIVKEAMKKSKIEKN 230

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              HTLRHSFATHL+ +G DLR++Q +LGH  ++TT+IYT+V+S +    + +     HP
Sbjct: 231 IYPHTLRHSFATHLIQHGADLRAVQRMLGHSDITTTEIYTHVDSAHLKKQIAK-----HP 285

Query: 320 SITQKDKKN 328
             ++  ++N
Sbjct: 286 KHSKHARQN 294


>gi|288800351|ref|ZP_06405809.1| integrase/recombinase XerD [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332564|gb|EFC71044.1| integrase/recombinase XerD [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 311

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 87/319 (27%), Positives = 162/319 (50%), Gaps = 12/319 (3%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E  +  + K  +++L+ L++ER  S  T+++Y+ D    + +           + + ++ 
Sbjct: 2   EKENQTIAKVIRSYLRYLKLERNYSINTIEAYKNDLEHLITYCQENN------RDVLKMQ 55

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
             +   F      +KIG  S  R LSG++SF +YL    I  ++    + +      LP 
Sbjct: 56  IADFEHFAFILHERKIGASSQARILSGVRSFYRYLVIDGILEDNPTELLESPILGEHLPE 115

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L+ ++   L +++ L     +KW   RN AI+ +L+ CGLR+SE ++L   NI   +  
Sbjct: 116 VLSTEEVDQLQNSIDL-----SKWEGHRNRAIIEILFSCGLRVSELINLKLSNIYIIERY 170

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           +R+ GKG K R++P+       +  ++      ++    Q  +F   RG  L   +    
Sbjct: 171 IRVIGKGSKERLIPISDKALYELELWFRDRNIMNIKPGEQDYVFLNRRGAHLTRTMILIM 230

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           I++     G+  + + HTLRHSFAT LL  G DL +IQ++LGH  +STT+IYT+++ ++ 
Sbjct: 231 IKKQAELAGIKKTISPHTLRHSFATELLRGGADLIAIQAMLGHESVSTTEIYTHIDRESL 290

Query: 307 GDWMMEIYDQTHPSITQKD 325
              ++E + +  P  T+++
Sbjct: 291 RKAIIEHHPRNKPKYTKEN 309


>gi|224025282|ref|ZP_03643648.1| hypothetical protein BACCOPRO_02021 [Bacteroides coprophilus DSM
           18228]
 gi|224018518|gb|EEF76516.1| hypothetical protein BACCOPRO_02021 [Bacteroides coprophilus DSM
           18228]
          Length = 314

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 81/313 (25%), Positives = 149/313 (47%), Gaps = 20/313 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            + Q L++E+  S  T+ +Y  D  + + +L    ++ +      +++  ++  F +   
Sbjct: 13  KYKQYLKLEKSFSSNTIDAYLTDLDKLMAYLTLEGKDCL------EVTLDDLETFSAGLH 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              I  RS  R LSG+++F ++L       +     + + +    LP  L  ++   L+ 
Sbjct: 67  DIGINARSQARILSGVRAFYRFLLLEDYIQQDPCELLESPQTGRHLPDVLTVEEIDRLI- 125

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                +   +     RN AIL  LY CGLR+SE  +L   ++  ++  ++++GKG K R+
Sbjct: 126 ----GSIDRSSREGQRNRAILETLYSCGLRVSELCNLKLSDLYLNEGFIKVEGKGSKQRL 181

Query: 200 VPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+ P     +  Y+      L     +  +F    GK ++  +    I++L    G+  
Sbjct: 182 VPISPKAISELNNYFPNRNAGLIKPGYEDFVFISRFGKNISRIMVFHIIKELAGMAGIKK 241

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + + HT RHSFATHLL  G +LR+IQ +LGH  + TT+IYT+++     + + +     H
Sbjct: 242 TISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHID----RNRLRQEIIGHH 297

Query: 319 PS----ITQKDKK 327
           P      T+K K 
Sbjct: 298 PRNLLEQTRKTKD 310


>gi|315607090|ref|ZP_07882094.1| integrase/recombinase XerD [Prevotella buccae ATCC 33574]
 gi|315251144|gb|EFU31129.1| integrase/recombinase XerD [Prevotella buccae ATCC 33574]
          Length = 313

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 82/303 (27%), Positives = 153/303 (50%), Gaps = 16/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L++ER  S+ T+++Y  D    + FL       +  +       +++  F +  
Sbjct: 22  KAYLRYLKLERNYSENTVEAYRHDLGYLMAFLKERGLAAVDAE------LSDMEEFAATL 75

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +  RS  R LSG++SF ++L+            + + +    LP  L+ ++   L 
Sbjct: 76  HEKNVSARSQSRILSGVRSFYRFLRLDGYMETDPTELLGSPQTGEHLPEYLSTEEVDLLE 135

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            ++ L     +KW   RN AI+ +L+ CGLR+SE ++L   ++  ++  +R+ GKG+K R
Sbjct: 136 GSIDL-----SKWEGQRNKAIIEVLFSCGLRVSELVNLKFSDLFPEEKFVRVIGKGNKER 190

Query: 199 IVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+  S  + +  +Y       +    +  +F   RG  L   +    I++     G+ 
Sbjct: 191 LVPISSSALRQLELWYMDRNLMTIKPGEEDYVFLNRRGHHLTRTMILIMIKRQAVAAGIK 250

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT++YT++ + +    ++E     
Sbjct: 251 KTISPHTLRHSFATALLKGGADLRAIQAMLGHESIGTTEVYTHLETSDLRREILE----H 306

Query: 318 HPS 320
           HP 
Sbjct: 307 HPR 309


>gi|227535113|ref|ZP_03965162.1| site-specific recombinase XerD [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227187254|gb|EEI67321.1| site-specific recombinase XerD [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 298

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 90/307 (29%), Positives = 148/307 (48%), Gaps = 12/307 (3%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +K    + + LE+ER  S  T+ +Y  D R+F  FL             R +   +++ +
Sbjct: 1   MKPIAAFQEYLEVERQYSPETVTAYLSDLREFQAFLKANG----GFTDFRHVDDLDVQTY 56

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++    Q +   S+ R +S ++SF +YL +  +   +    +   K+ + LP+   E + 
Sbjct: 57  LTDLNKQDLARTSIARKISSLRSFYRYLTRIDVVKRNPFELVELKKQHHHLPQFFYEAEI 116

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L       T      +D RN A+L +LYG G+R+SE   LT   +  + + L I GKG
Sbjct: 117 QELF-----KTVAGKTPLDQRNRALLEVLYGTGIRVSECAKLTLNQVDFNTALLLIHGKG 171

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQLR 251
           +K R VP     ++A+  Y       L    Q     +F    G+P+     +  + QL 
Sbjct: 172 NKDRYVPFGQYAQQALRTYLKDGRQVLMAKSQAQHRYVFVNQYGRPITSRGIEYILDQLI 231

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +   L  +   H LRHSFATH+L +G DLR++Q +LGH  LSTTQIYT+V   +  +  M
Sbjct: 232 KQTTLTANIHPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYM 291

Query: 312 EIYDQTH 318
           + Y + +
Sbjct: 292 KYYPKHN 298


>gi|315023982|gb|EFT36984.1| tyrosine recombinase XerD [Riemerella anatipestifer RA-YM]
          Length = 303

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 156/305 (51%), Gaps = 15/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q++   L+ E+ LS  T+ +Y  D ++   F     E K+   +   +SY +I+ ++ +
Sbjct: 7   IQDFANALKFEKNLSNNTIDAYTRDIKKLQYF----AENKLNDTSALDISYEQIQEYLYQ 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                  +RS  R +S IK+F K+L + ++  ++    +   K    LP  LN ++  +L
Sbjct: 63  ISKNYTNERSQSRWISSIKAFFKFLHEDELRADNPARLLETPKLGLYLPDTLNFEEIESL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++        +T  +  RN  I+  LYGCGLR+SE + L   N+  ++  + + GKG K 
Sbjct: 123 IE-----AIDKTTSLGKRNHTIIETLYGCGLRVSELVELKISNLNFEEEFIIVDGKGGKT 177

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R+VPL     + I +Y      ++ +N +    LF   RG  L   +    I+ L     
Sbjct: 178 RLVPLAQYTAELIKDYLLEVRSEIKINPKHSDILFLNRRGSKLTRVMVFIIIKDLALQAN 237

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + + HT RHSFATHLL NG DLR IQ +LGH  ++TT+IYT++++++    + E   
Sbjct: 238 IKKNISPHTFRHSFATHLLKNGADLRYIQEMLGHSSITTTEIYTHLDNED----LRETIM 293

Query: 316 QTHPS 320
           + HP 
Sbjct: 294 KYHPR 298


>gi|312795208|ref|YP_004028130.1| integrase/recombinase (XerD/RipX family) [Burkholderia rhizoxinica
           HKI 454]
 gi|312166983|emb|CBW73986.1| Integrase/recombinase (XerD/RipX family) [Burkholderia rhizoxinica
           HKI 454]
          Length = 308

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 84/306 (27%), Positives = 139/306 (45%), Gaps = 17/306 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +    +   L +E GLS+ TL +Y  D   +  +LA   E      T+     +++  ++
Sbjct: 18  QAIDAFCDALWLEHGLSRNTLDAYRRDLSLYCDWLAATHER-----TLDATRESDLNGYL 72

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           + R   K    S  R LS  + +  +  +         L +R+ ++    P +LNE Q  
Sbjct: 73  AVRSDGK--ASSANRRLSVFRRYFAWALREHRVAADPTLRIRSARQPPRFPSSLNEAQVE 130

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+             +  R+ A+L L+Y  GLR+SE ++L    +  ++  +R+ GKG 
Sbjct: 131 ALL-----GAPDLDTPLGLRDRAMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGA 185

Query: 196 KIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K R+VP     R  +  Y        L       LF   RG  +    F   I++     
Sbjct: 186 KERLVPFGDEARGWLERYLRDARAVLLGARGADALFVTARGGAMTRQQFWNIIKRYALRA 245

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            + +  + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++
Sbjct: 246 DIHVPLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARER----LKALH 301

Query: 315 DQTHPS 320
              HP 
Sbjct: 302 AIHHPR 307


>gi|254282053|ref|ZP_04957021.1| tyrosine recombinase XerC [gamma proteobacterium NOR51-B]
 gi|219678256|gb|EED34605.1| tyrosine recombinase XerC [gamma proteobacterium NOR51-B]
          Length = 304

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 85/317 (26%), Positives = 154/317 (48%), Gaps = 16/317 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++  L     ++L      R +S  T+ +Y  D   F  F            + R +  +
Sbjct: 1   MTLSLGASISDFLDYQRDVRRMSHHTVSNYRRDLNHFEEFCRAS-----NCTSPRDIKES 55

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R++  + + Q     +++R LS ++S+ K+L  R     +  + +R  ++   LP+ +
Sbjct: 56  VVRSWAGQMQRQGKAPATIQRGLSSVRSYFKHLAARHADISNPAIGIRAPRRPRKLPKTI 115

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              +   L       T      ++ R+ AI  LLY  GLR++E + +  +++   +  + 
Sbjct: 116 EADRIGALFQRPAEST------LEKRDQAIAELLYSSGLRLAELVDVNLEDLDRREGVIT 169

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIR 248
           + GKGDK R VP+  +  KA+  +    P     L+ + PLF   RG  L     Q  ++
Sbjct: 170 VTGKGDKTRTVPVGVAALKALEAWIACRPIGQEVLSAKAPLFVNQRGTRLGQRSVQDRLK 229

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L +   L  +   H LRHSFATHLL + GDLR++Q +LGH  +STTQIYT+++ ++   
Sbjct: 230 KLAKATHLGQNLHPHMLRHSFATHLLESSGDLRAVQELLGHANISTTQIYTHLDFQH--- 286

Query: 309 WMMEIYDQTHPSITQKD 325
            + ++YD  HP   ++ 
Sbjct: 287 -LSKVYDTAHPRARKRK 302


>gi|121606322|ref|YP_983651.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
 gi|120595291|gb|ABM38730.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
          Length = 345

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 84/314 (26%), Positives = 153/314 (48%), Gaps = 23/314 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  + +E+ L+  T++ Y  D  +                 +  + +T +R ++++  
Sbjct: 21  RYLAYVRVEKRLASRTVELYMADLEKLQANARKAG------VALTDVKHTHLRRWVAQMH 74

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           ++    R +   LSG + F  +L +  +   + + ++R+ K +  LP+AL+  +A+ L  
Sbjct: 75  SRGRSGRGIALILSGWRGFYTWLGREGLVPGNPVQDVRSPKIAKPLPKALSVDEAVQLA- 133

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-------RIQG 192
           +  L  +    +++AR+  I  LLYGCGLRISE + L  Q     +  +        + G
Sbjct: 134 SFELEATDGDPFLEARDQCITELLYGCGLRISELVGLDAQASGKARGWIDMQGGDAHVLG 193

Query: 193 KGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           KG+K R VP+  +  K++ ++         P    +     LF   RG  L P   +  +
Sbjct: 194 KGEKRRSVPVGGAALKSLHKWLAARSLWARPGADGVQGGEALFINQRGSRLTPQHIRVRL 253

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +Q  +  GL      H LRHSFA+H+L + GDLR++Q +LGH  ++TTQ YT ++ ++  
Sbjct: 254 KQRSQQAGLATPVHPHMLRHSFASHVLQSSGDLRAVQELLGHASITTTQAYTRLDFQH-- 311

Query: 308 DWMMEIYDQTHPSI 321
             + +IYD  HP  
Sbjct: 312 --LAKIYDAAHPRA 323


>gi|162329627|ref|YP_471302.2| site-specific tyrosine recombinase XerD [Rhizobium etli CFN 42]
          Length = 317

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 91/318 (28%), Positives = 145/318 (45%), Gaps = 18/318 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             +++L+ +  ERG +  TLQSYE D      FL   +        + + +  ++ A+++
Sbjct: 8   HVESFLEMMSAERGAAANTLQSYERDLDDVRSFLNGRSIR------LTEAASADLAAYLA 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               Q     S  R L+ ++ F K+L    + T+     +   KK   LP+ +  ++   
Sbjct: 62  SLARQGFKPSSQARRLAAMRQFYKFLYAEGLRTDDPTGVLDAPKKGRPLPKTMGVEEVGR 121

Query: 137 LVDNVLLHTSHETKWIDARNS--AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           L+                R    A+L LLY  G+R+SE +SL  + +  +   L I+GKG
Sbjct: 122 LLSQAQTEADDPAPGQLQRRRMLALLELLYATGMRVSELVSLPARVLDQEGRFLMIRGKG 181

Query: 195 DKIRIVPLLPSVRKAILEY----YDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQ 249
           +K R+VPL  S   A+  Y                   LF    +   L   VF R ++ 
Sbjct: 182 NKERLVPLSHSAIAALKSYGRLLAADAAAAKEPQESPWLFPAASKEGYLPRQVFARDLKN 241

Query: 250 LRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           L    GL  S  + H +RH+FA+HLL+NG DLR +Q +LGH  +STTQIYT+V  +    
Sbjct: 242 LAIRAGLTPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER--- 298

Query: 309 WMMEIYDQTHPSITQKDK 326
            + ++    HP   Q  K
Sbjct: 299 -LQQLVQMHHPLAKQAKK 315


>gi|325127525|gb|EGC50451.1| tyrosine recombinase XerC [Neisseria meningitidis N1568]
 gi|325133512|gb|EGC56175.1| tyrosine recombinase XerC [Neisseria meningitidis M13399]
 gi|325206779|gb|ADZ02232.1| tyrosine recombinase XerC [Neisseria meningitidis M04-240196]
          Length = 305

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 85/313 (27%), Positives = 147/313 (46%), Gaps = 13/313 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
                  +L+N+  E G S+ T+ +Y  D  +    LA    E       + LS  +  A
Sbjct: 6   FAAHFDAYLENIVRE-GKSEHTVAAYRRDLEELFALLAQMPSEAEG-GVPQDLSRRDFTA 63

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            + +   + +  R+L R LS  + +  +L +R +       +++  K+   +P+AL ++ 
Sbjct: 64  ALRRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPAADIKPPKQPERVPKALPQEW 123

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++D  +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GK
Sbjct: 124 LNRMLDLPV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGK 179

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R VPL     +A+  Y  L     +      LF G  G  L+    Q+ + Q    
Sbjct: 180 GRKQRQVPLTGKSVEALKNYLPLRQTASDGK---ALFTGRNGTRLSQRQIQKRLAQWAAQ 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G     + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +
Sbjct: 237 NGDGRHVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARL 292

Query: 314 YDQTHPSITQKDK 326
           YD+ HP   ++D+
Sbjct: 293 YDEAHPRAKRQDE 305


>gi|314936587|ref|ZP_07843934.1| tyrosine recombinase XerC [Staphylococcus hominis subsp. hominis
           C80]
 gi|313655206|gb|EFS18951.1| tyrosine recombinase XerC [Staphylococcus hominis subsp. hominis
           C80]
          Length = 297

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 79/313 (25%), Positives = 152/313 (48%), Gaps = 16/313 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + + ++ +L  L++ER  S  TL++Y  D  QF  FL         +  +R   Y + R 
Sbjct: 1   MEEIQKKFLNMLKVERNFSDHTLKAYHDDLAQFNQFLEQ------ELLNLRTFEYKDARN 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++S   +  +   ++ R +S +++F ++   +  +  +  + + + KK   LP+   E++
Sbjct: 55  YLSYLYSNNLKRTTVSRKISTLRTFYEFWMTQDTSVNNPFIQLVHPKKEQYLPQFFYEEE 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L      +T         R+  ++ LLY  G+R+SE +++   ++  +   +++ GK
Sbjct: 115 MEALF-----NTVSNDAKKGLRDRVVIELLYATGIRVSELVNIKVMDLDMNLPGVKVLGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R VP     R++I +Y       L       L   ++G P+     +  +  + + 
Sbjct: 170 GNKERFVPFGEFCRQSIEQYL-EKFKPLKSKSHPYLIVNMKGDPITERGIRYLLNDVVKR 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                    H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++     + ++
Sbjct: 229 TAGVTEIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ----LRKV 284

Query: 314 YDQTHPSITQKDK 326
           Y   HP   ++ K
Sbjct: 285 YLSAHPRAKKESK 297


>gi|326316149|ref|YP_004233821.1| tyrosine recombinase XerD [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323372985|gb|ADX45254.1| tyrosine recombinase XerD [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 303

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 79/312 (25%), Positives = 148/312 (47%), Gaps = 13/312 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S         ++  L +E GLS+ TL +Y  D   +  +L  +  +  T   +   +  
Sbjct: 3   LSPASQTAIDAFIDALWLEDGLSRNTLAAYRRDLALYAQWLGQHAPD--TAGALDATAEH 60

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            ++A+ S R  +     S  R L+ ++ + ++  + +       + ++  ++   +P+ L
Sbjct: 61  HLKAYFSARHAETRA-TSANRRLTVLRRYFQWALRERRIGADPTVRLQAARQPLRVPKTL 119

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  Q   L+          +  +  R+ A+L L+Y  GLR++E ++L   +    +  LR
Sbjct: 120 SAAQVEALL-----QAPDTSTPLGLRDRAMLELMYASGLRVTELVTLKTYHASLSEGVLR 174

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           + GKG K R+VP      + +  Y +    D L       LF   RG  +   +F   ++
Sbjct: 175 VMGKGSKERLVPFGEVAAQWMQRYLNEARADILAGQQTDDLFVTRRGAGMTRAMFWVVVK 234

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +  +  G+ +  + HTLRH+FATHLL++G DLR +Q +LGH  +STT IYT+V  +    
Sbjct: 235 KHAQAAGITVPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARER--- 291

Query: 309 WMMEIYDQTHPS 320
            +  ++ Q HP 
Sbjct: 292 -LKALHAQHHPR 302


>gi|257095701|ref|YP_003169342.1| tyrosine recombinase XerC [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257048225|gb|ACV37413.1| tyrosine recombinase XerC [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 304

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 92/308 (29%), Positives = 156/308 (50%), Gaps = 16/308 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L  +R LS  T+ +Y  D       +     E  +      +    IR F++   
Sbjct: 12  AYLDELAGQRRLSPHTVSNYRHDLETLCALIG----ELPSDSGFAAIETHHIRRFVAILH 67

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           T+ +G RSL R+LS  + F ++L +R +TT + + ++R  K    LP+AL+  +A  L+ 
Sbjct: 68  TRGLGGRSLGRTLSAWRGFYRWLVQRGMTTLNPVDSVRPPKSPKGLPKALSPDEANRLL- 126

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQGKGDKIR 198
                 +     ++ R+ AI  L Y  GLR++E  +L            +R+ GK +K+R
Sbjct: 127 -----AAQSENLLEIRDQAIFELFYSSGLRLAELAALDIGCLEDLLAGEVRVLGKRNKLR 181

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVP+    R+A+  +       L    +  LF G RG+ L   + Q  + +  R  GLP 
Sbjct: 182 IVPVGSQAREAVALWAGQRAC-LAAADETALFVGQRGRRLGVRMIQLRLLRRGRAQGLPA 240

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRHSFA+H+L + GDLR++Q +LGH  +++TQ+YT+++ ++    +  +YDQ H
Sbjct: 241 RVHPHMLRHSFASHVLQSSGDLRAVQEMLGHASIASTQVYTHLDFQH----LAAVYDQAH 296

Query: 319 PSITQKDK 326
           P   +K +
Sbjct: 297 PRAKRKPE 304


>gi|182680307|ref|YP_001834453.1| integrase family protein [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182636190|gb|ACB96964.1| integrase family protein [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 325

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 92/318 (28%), Positives = 148/318 (46%), Gaps = 18/318 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  +  ERG ++ TL++Y  D   +   LA         +++   +  +IR ++  
Sbjct: 10  IEAFLDMIGAERGAARNTLEAYGRDLTDYAQALADRG------RSLLDATSEDIRHYLGD 63

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             TQ +   S  R LS I+ F ++L      ++   L +   ++S  LP+ L   +   L
Sbjct: 64  LETQGLKPSSSARRLSAIRQFHRFLASESHRSDDPALILEGPRRSRGLPKTLTMAEVERL 123

Query: 138 VDNVLLHTSHETKWIDARNSA-----ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +           + +  R  A     +L LLY  GLR+SE +SL    +      + I+G
Sbjct: 124 LTVSKEGLEDPARPLGERVRAARTACLLELLYATGLRVSELVSLPDSAMRGADPLITIRG 183

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQL 250
           KG + R+VPL P  R+AI  Y DL     L L+    LF        L+   F R ++ +
Sbjct: 184 KGGRERLVPLPPVARRAITFYRDLLHQKHLGLSKGGWLFPADSETGYLSRQAFARDLKVV 243

Query: 251 RRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
               G+     + H LRH+FA+HLL NG DLR +Q +LGH  ++TTQIYT+V  +     
Sbjct: 244 AAAAGIDTARISPHVLRHAFASHLLQNGADLRIVQELLGHADIATTQIYTHVLDER---- 299

Query: 310 MMEIYDQTHPSITQKDKK 327
           M  +    HP   +K  +
Sbjct: 300 MKAMVRDLHPLAEEKPDQ 317


>gi|194335806|ref|YP_002017600.1| integrase family protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|254799350|sp|B4SDZ2|XERC_PELPB RecName: Full=Tyrosine recombinase xerC
 gi|194308283|gb|ACF42983.1| integrase family protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 336

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 93/319 (29%), Positives = 158/319 (49%), Gaps = 21/319 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQTIRQLSYTEIRAFISKR 78
           ++L+ L   + LS  T+ +Y  D  QF  FLA +     +++    Q++  E+R F++  
Sbjct: 22  DFLEKLSTLKNLSPNTVIAYRTDLFQFFSFLAQHLGLADLSLFDPEQVTTVEVRLFMAAL 81

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +  RS+ R L+ +KSF +YL++      S    +   +    +P  L E+Q     
Sbjct: 82  IERGVRQRSIARKLASVKSFYRYLQESGHIRNSLFSALATPQYPKRVPGFLTEQQTEKFF 141

Query: 139 DNVLLHTSH----------ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           + +L  ++           +  +I  R+ +IL LLY  GLRISE + L    +  ++  +
Sbjct: 142 NELLPQSAQGFRKPEKNELDESFICERDRSILELLYSSGLRISELIGLKVGELDLERGYV 201

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCP------FDLNLNIQLPLFRGIRGKPLNPGV 242
           ++ GKG K RIVP+      A+ +Y+++           +    L +F    GK L P +
Sbjct: 202 KLTGKGRKQRIVPVGQQAVDALKKYFEVRRNFFRMKRTGDAGELLHVFVTKSGKKLYPML 261

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            QR  R+    +        H LRH+FATHLL++G DL S+  +LGH  LSTT+IYT+V 
Sbjct: 262 VQRLTRKYLTSVTDQKKKNPHLLRHTFATHLLNSGADLNSVSDMLGHSNLSTTEIYTHVT 321

Query: 303 SKNGGDWMMEIYDQTHPSI 321
            +     + E+Y + HP+ 
Sbjct: 322 FER----LKEVYRKAHPNA 336


>gi|326382897|ref|ZP_08204587.1| site-specific tyrosine recombinase XerC [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326198487|gb|EGD55671.1| site-specific tyrosine recombinase XerC [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 297

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 83/303 (27%), Positives = 139/303 (45%), Gaps = 13/303 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +  +L  E+G SK T+++Y  D R  + F      E      +  L    +RA++++  
Sbjct: 7   AFADHLSFEKGHSKHTVRAYTGDIRGLVAFAGARGVE------VGDLDLPLLRAWLAEHA 60

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +     ++ R +S  K+F  +  +  +        ++  K    LP  L  +QA   VD
Sbjct: 61  RRGAARTTIARQVSSAKTFCAWAVREGVLQTDPAQRLQAPKSHRVLPAVLAPEQAAAAVD 120

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                ++ +   +  R+  IL LLY CG+R+ E   L   ++  D+  +R+ GKGDK R 
Sbjct: 121 GAAGDSAGDGDPVAFRDRVILELLYSCGIRVGELCGLDLGDVDADRRVIRVIGKGDKQRS 180

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP       A+ ++       L        L  G++G  L+  + +  + +     G   
Sbjct: 181 VPYGGPAAAALDDWLRRGRSALATAASGDALLLGVKGGRLDQRMARTVVHRATETAG--Q 238

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           S   H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V+ +     +  ++ Q H
Sbjct: 239 SVGPHALRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVSVER----LRAVHRQAH 294

Query: 319 PSI 321
           P  
Sbjct: 295 PRA 297


>gi|170693510|ref|ZP_02884669.1| tyrosine recombinase XerD [Burkholderia graminis C4D1M]
 gi|170141665|gb|EDT09834.1| tyrosine recombinase XerD [Burkholderia graminis C4D1M]
          Length = 322

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 137/304 (45%), Gaps = 17/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +   L +E GLS+ TL +Y  D R F  +LA      + I      S  ++ A+ + 
Sbjct: 34  IDAFCDALWLEHGLSRNTLDAYRRDLRLFSEWLAQTRGASLDIA-----SEADLNAYSAA 88

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           RR  K    S  R LS  + +  +  +         L +R+ K+    P  L+E Q   L
Sbjct: 89  RRKDK--STSANRRLSVFRRYYGWAVREHRAKVDPTLRIRSAKQPPRFPSTLSEAQVEAL 146

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +             +  R+  +L L+Y  GLR++E ++L    +  ++  +R+ GKG K 
Sbjct: 147 L-----GAPDIDTPLGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKE 201

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R++P        I  Y     P  L       LF   R + +    F   I++     G+
Sbjct: 202 RLIPFGEEAHGWIERYLRDARPALLGARAADALFVTNRAEGMTRQQFWNIIKRHAAAAGV 261

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++  
Sbjct: 262 HAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARER----LKSLHAV 317

Query: 317 THPS 320
            HP 
Sbjct: 318 HHPR 321


>gi|295677507|ref|YP_003606031.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1002]
 gi|295437350|gb|ADG16520.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1002]
          Length = 316

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 139/304 (45%), Gaps = 17/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +   L +E GLS+ TL +Y  D R F  +LA          ++   S  ++ A+ + 
Sbjct: 28  IDAFCDALWLEHGLSRNTLDAYRRDLRLFCEWLAHTRN-----ASLDTASEADLSAYSAA 82

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  QK    S  R LS  + +  +  +         L +R+ K+    P  L+E Q   L
Sbjct: 83  R--QKDKATSANRRLSVFRRYYAWAVREHRAAADPTLRLRSAKQPPRFPSTLSEAQVEAL 140

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +             +  R+  +L L+Y  GLR++E ++L    +  ++  +R+ GKG K 
Sbjct: 141 L-----GAPDIDTPLGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVTGKGSKE 195

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP        I  Y     P  L       LF   R + +    F   I++  +  G+
Sbjct: 196 RLVPFGEEAHAWIERYLREARPALLGPRAADALFVTARAEGMTRQQFWNIIKRHAQAAGV 255

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++ Q
Sbjct: 256 HAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARER----LKSLHAQ 311

Query: 317 THPS 320
            HP 
Sbjct: 312 HHPR 315


>gi|294340803|emb|CAZ89198.1| putative XerD or XerC integrase [Thiomonas sp. 3As]
          Length = 340

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 94/338 (27%), Positives = 157/338 (46%), Gaps = 35/338 (10%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           S  L +   ++L + + ER L++ TL +Y  D    L        E +    I  L    
Sbjct: 15  SPTLRQLAADYLAHAQTERRLAEGTLVNYRRDLDDLLQ-----RAEALGAAPIESL---H 66

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           IR + ++     +  R++   LS  +SF +++ +      + + ++R  K +  LP+AL+
Sbjct: 67  IRRWAAQLHAGGMSPRAIAARLSAWRSFFRWMGRLGFVAANPVQDVRAPKAAKPLPKALS 126

Query: 131 EKQALTLVD------------NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
             QA+ L              +   H +       AR  AI  LLY CGLR+SE   L  
Sbjct: 127 VDQAVALAAYTPQESTPASHPHRRPHQAEPFATRGARVHAIAELLYSCGLRVSELTGLDV 186

Query: 179 QNIMDDQSTL-------RIQGKGDKIRIVPLLPSVRKAILEYYDLCP----FDLNLNIQL 227
           +     +  +        + GKG+K R VP+      A+ ++ +  P     D + + Q+
Sbjct: 187 RASKTARGWIDWDAAEATVTGKGNKRRSVPIGRPALLALRQWLEQRPALLRCDADADAQV 246

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
            LF G RG  L P      +R+  R  GL      H LRHSFA+H+L + GDLR++Q +L
Sbjct: 247 ALFLGARGARLTPQRVWLELREHARAAGLDARVHPHMLRHSFASHVLQSSGDLRAVQELL 306

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           GH  ++TTQ+YT ++ ++    + ++YD  HP   +K 
Sbjct: 307 GHSSIATTQVYTRLDFQH----LAKVYDAAHPRARKKP 340


>gi|317121809|ref|YP_004101812.1| integrase family protein [Thermaerobacter marianensis DSM 12885]
 gi|315591789|gb|ADU51085.1| integrase family protein [Thermaerobacter marianensis DSM 12885]
          Length = 336

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 92/333 (27%), Positives = 152/333 (45%), Gaps = 20/333 (6%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           EG   PE          + +L +L +ERGL+  TL++Y  D   +L FL    E  +   
Sbjct: 10  EGPGRPEAGGPPAADVVEAYLDHLRLERGLAVRTLEAYAADLAGWLDFLGL--EPPVDAA 67

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           T+ +++  ++R ++++   + +   ++ R L+ ++   ++  +      S    +   + 
Sbjct: 68  TLGRVTGRDLRRWLAQLDQRGLQRSTVARKLAAVRGLFRFAVREGWIPASPAARLGTPRV 127

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              LPR    ++A  L++     T         RN A+L LLYGCGLR+ E   L   ++
Sbjct: 128 RRRLPRVYTPEEARALLEAAGAGTGPAA----LRNRALLELLYGCGLRVGELSGLDLDDV 183

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL---------NIQLPLFRG 232
             +   LR+ GKG K RI+PL   V  A+  Y +     L             +  +F  
Sbjct: 184 DWEGGWLRVYGKGGKERILPLAGPVAAALRAYVEDGRPHLAAARGSRPCPPGDRQAVFLN 243

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
             G  L+P   Q  +R+    +   L    H LRH+FATHLL  G  LR++Q +LGH  L
Sbjct: 244 RWGGRLSPRSIQAIVRKAGAVVA-RLEAHPHLLRHTFATHLLDGGAGLRAVQELLGHASL 302

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           + TQIYT+V+       +  +Y Q HP   +  
Sbjct: 303 AATQIYTHVSRAR----LWAVYRQAHPRARRSP 331


>gi|262091726|gb|ACY25315.1| tyrosine recombinase XerD [uncultured actinobacterium]
          Length = 311

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 80/310 (25%), Positives = 152/310 (49%), Gaps = 22/310 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  + IE+G S  T+++Y  D  ++  FL   + + +++Q+        I  FI+  
Sbjct: 8   ERFLTWMTIEQGRSPRTIEAYRRDLHRYEAFLVLKSCDVLSVQSP------VIEQFIASL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R +    +S+ R  + ++   +YL + ++  ++    +  +K  + +P+AL+E +   ++
Sbjct: 62  RAEGKAAKSVARMYAAVRMMHRYLIEERLRPDNPTSGVDGVKVPSGIPKALSEDEVARIL 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                 +         R+ A+L  LY  G RISEA  L+  ++  +   +R+ GKG K R
Sbjct: 122 -----ASVTGVDSFALRDRALLEFLYATGARISEACGLSLSDLDMESQLVRLFGKGSKER 176

Query: 199 IVPLLPSVRKAILEYYDLCPF-------DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           IVP     + A+ E+                 +    +F G RG  L+     R +++  
Sbjct: 177 IVPFGSHAKAALEEWLGAGGRTMLVSEQWAKRDHADAVFLGSRGTRLSRQAAWRIVQKFA 236

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +   +    + H LRHS ATH+L +G DLR +Q +LGH  +STTQ+YT V+++     + 
Sbjct: 237 QIAEVGDEVSPHVLRHSCATHMLIHGADLRIVQELLGHASVSTTQVYTRVDNE----VLF 292

Query: 312 EIYDQTHPSI 321
           ++Y ++HP  
Sbjct: 293 DMYKESHPRA 302


>gi|281357729|ref|ZP_06244215.1| tyrosine recombinase XerD [Victivallis vadensis ATCC BAA-548]
 gi|281315676|gb|EFA99703.1| tyrosine recombinase XerD [Victivallis vadensis ATCC BAA-548]
          Length = 299

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 88/307 (28%), Positives = 137/307 (44%), Gaps = 14/307 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           ++   ++  L  ERGLS  T  +Y  D  +F  +L      +   +   Q+    I  ++
Sbjct: 4   RDLNLFIDYLVTERGLSSNTTAAYRSDLEEFRDWLT-----ERGFKEWSQVDREAILDYL 58

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
              R       +L R L  +K   ++L +  I  +     M + K    LP  L+E +  
Sbjct: 59  DAERDLGRETATLARRLVAVKMLSRFLTEEGILKKDVTAVMDSPKLWRILPDFLSEAEVD 118

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
             +           +  + RN AIL +LY  GLR+SE   L    +  D   LR+ GKG 
Sbjct: 119 AFLKAFPASV---KEPFEMRNRAILEVLYSSGLRVSELARLPLTAVDFDNELLRVVGKGS 175

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLN--IQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K RIVP+     + +  Y       L         +F    G+PLN       ++     
Sbjct: 176 KTRIVPIGKVALRTLRRYLADVRPLLAEKNPRSPYVFLSKSGRPLNREWIWNVVKVAAAR 235

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+  +   HTLRHSFA+HLL++G DLR IQ +LGH  +STT+IYT+++S      +  I
Sbjct: 236 AGIHKNIHPHTLRHSFASHLLAHGADLRVIQEMLGHADISTTEIYTHIDSNR----LAAI 291

Query: 314 YDQTHPS 320
           + + HP 
Sbjct: 292 HHKFHPR 298


>gi|330818646|ref|YP_004362351.1| Site-specific recombinase XerC [Burkholderia gladioli BSR3]
 gi|327371039|gb|AEA62395.1| Site-specific recombinase XerC [Burkholderia gladioli BSR3]
          Length = 306

 Score =  248 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 86/321 (26%), Positives = 155/321 (48%), Gaps = 29/321 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                +L  L+  R LS+ TL+ Y  +    L             + +  L   ++R  +
Sbjct: 4   DPIAAYLSYLQHVRQLSEHTLRGYAHELDALLAL--------ADGRPLASLGAADMRGAV 55

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++     +  RS+   LS  ++F ++   R     + +  +R  K++ +LP+AL+   A 
Sbjct: 56  ARAHAGGLSARSIAHRLSAWRAFYRWYALRVEMPANPVATVRAPKRAKTLPKALSVDDAN 115

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP-----------QNIMDD 184
           TL++     +         R+ AIL L Y  GLR++E + L               +  +
Sbjct: 116 TLME-----SPFPDTPEGLRDHAILELFYSSGLRLAELVGLDVHYTQADGYRSASWLDRE 170

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           Q+ + + GKG K R VP+     +A+  +  +    +  +   PLF  +RGK ++PGV +
Sbjct: 171 QAEVSVLGKGGKERKVPVGRKALEALDAWLAVRAGWVRTDPH-PLFLSVRGKRMSPGVVR 229

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  +S TQ+YT+++ +
Sbjct: 230 ERVKRAALVAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQ 289

Query: 305 NGGDWMMEIYDQTHPSITQKD 325
           +    +  IYD  HP   ++D
Sbjct: 290 H----LARIYDSAHPRAKKRD 306


>gi|317405888|gb|EFV86170.1| integrase/recombinase [Achromobacter xylosoxidans C54]
          Length = 327

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 79/325 (24%), Positives = 143/325 (44%), Gaps = 30/325 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF------------------YTEEK 57
            +   ++  + +E GLS  TL +Y  D   F  +L                    +    
Sbjct: 12  ADIDAFIDAVWLEDGLSANTLAAYRRDLTGFARWLEDPEAYAREMADRYGDAASAHALPA 71

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
              + + +    +I A+ + R  +     +  R L+ ++ F  +  +         L + 
Sbjct: 72  GPAKALAEAGKADIEAWFAFRHEETRA-TTANRRLAALRRFYAWALREHRAAHDPCLTLV 130

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             K+   LP+ L+E+Q   L+           +    R+ A+L +LY  GLR+SE + + 
Sbjct: 131 AAKQPPRLPKTLSEQQVDALL-----RAPDLNEPRGLRDRAMLEMLYATGLRVSELVGVR 185

Query: 178 PQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIRG 235
             ++  ++  +R+  GKG K R+VPL       I +Y      +L    +   LF   R 
Sbjct: 186 ALDVSLNEGVVRVVLGKGGKDRLVPLGAEAAHWIDQYMKTARPELAAGRVSDALFITGRA 245

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           + ++   F + +++     G+    + H LRH+FATHLL++G DLR +Q +LGH  +STT
Sbjct: 246 EAMSRQAFWQLVKKYAVLAGVHAPLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTT 305

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHPS 320
           QIYT+V  +     +  ++   HP 
Sbjct: 306 QIYTHVARER----LKALHAAHHPR 326


>gi|183221814|ref|YP_001839810.1| tyrosine recombinase XerC [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189911886|ref|YP_001963441.1| tyrosine site-specific recombinase XerC [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167776562|gb|ABZ94863.1| Tyrosine site-specific recombinase XerC [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167780236|gb|ABZ98534.1| Tyrosine recombinase XerC [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 311

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 85/319 (26%), Positives = 158/319 (49%), Gaps = 18/319 (5%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +PE     +    +++   L+IE+  S+ TL +Y  D + F  F     +E+I I +   
Sbjct: 10  IPEHFPQVMADLFRSYRTYLKIEKNYSEHTLFAYLRDLKFFFEFC---LKEEIDILS--- 63

Query: 66  LSYTEIRAFISKRRTQKIGD-RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           +   ++RA+ +  ++ K  D R+  R LS +++F K+L + +    + IL +   K    
Sbjct: 64  VDVLDVRAYFADLKSSKKQDKRTQSRKLSSLRTFYKFLFREEKIGANPILQVSFPKTKKR 123

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP+     +   ++D        + + +  R+ AI+ +LY  GLR+ E ++    ++ ++
Sbjct: 124 LPKNFTPIETEDILDY---EDPEKKEVLGKRDKAIVEVLYSTGLRVFELVNAKLSDLNEE 180

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
            ++L++ GK  K R V + P  + A+ EY D             +F   RG  L     +
Sbjct: 181 LTSLKVMGKRRKERFVFIGPEAKVALQEYLDER----GNGGPEEIFLNQRGGKLTTRGIR 236

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             + + R  +G+  + T H  RH+FAT LL+ G D+R++Q +LGH  LS+TQ+Y +V+  
Sbjct: 237 YILSERRSVMGMEKAITPHKFRHTFATDLLNAGADIRAVQELLGHSSLSSTQVYLSVS-- 294

Query: 305 NGGDWMMEIYDQTHPSITQ 323
              D + E+Y   HP   +
Sbjct: 295 --RDRLKEVYRNAHPHAKK 311


>gi|15827711|ref|NP_301974.1| site-specific tyrosine recombinase XerD [Mycobacterium leprae TN]
 gi|221230188|ref|YP_002503604.1| site-specific tyrosine recombinase XerD [Mycobacterium leprae
           Br4923]
 gi|34222781|sp|Q49890|XERD_MYCLE RecName: Full=Tyrosine recombinase xerD
 gi|2065218|emb|CAB08282.1| XerD [Mycobacterium leprae]
 gi|13093262|emb|CAC31746.1| integrase/recombinase [Mycobacterium leprae]
 gi|219933295|emb|CAR71460.1| integrase/recombinase [Mycobacterium leprae Br4923]
          Length = 316

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 86/326 (26%), Positives = 145/326 (44%), Gaps = 22/326 (6%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + +  L  + Q +L  L IER ++  TL SY  D  ++   L+        I+ + ++  
Sbjct: 1   MTTAALQTQLQGYLDYLIIERSIAANTLSSYRRDLIRYSKHLS-----DRGIEDLAKVGE 55

Query: 69  TEIRAFISKRRTQK-------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            ++  F+   R          +   S  R+L  ++   ++     +        +R    
Sbjct: 56  HDVSEFLVALRRGDPDSGVAALSAVSAARALIAVRGLHRFAVAEGLVDLDVARAVRPPTP 115

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              LP++L   + L L+++V    S     +  RN A+L LLY  G RISEA+ L   ++
Sbjct: 116 GRRLPKSLTVDEVLALLESVGGE-SRADGPLVLRNRALLELLYSTGSRISEAVGLDVDDV 174

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-----IQLPLFRGIRGK 236
                T+ +QGKG K R+VP+     +A+  Y      DL            +F   RG 
Sbjct: 175 DTQARTVLLQGKGGKQRLVPVGRPAVQALDAYLVRGRSDLARRGPGMLATPAIFLNARGG 234

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L+     + ++    + G+    + H LRHSFATHLL  G D+R +Q ++GH  ++TTQ
Sbjct: 235 RLSRQSAWQVLQDAAEHAGITSGVSPHMLRHSFATHLLEGGADIRVVQELMGHASVTTTQ 294

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSIT 322
           IYT V  +     + E++   HP   
Sbjct: 295 IYTLVTVQ----ALREVWAGAHPRAK 316


>gi|209965952|ref|YP_002298867.1| tyrosine recombinase XerD [Rhodospirillum centenum SW]
 gi|209959418|gb|ACJ00055.1| tyrosine recombinase XerD [Rhodospirillum centenum SW]
          Length = 330

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 91/317 (28%), Positives = 142/317 (44%), Gaps = 22/317 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L  ERG +  T  +Y  D R    FLA     +     + + S  ++RA++  
Sbjct: 23  VDAFLDMLVAERGAAANTRDAYARDLRDVAAFLAA----RRGGTALDRASTDDLRAYLEH 78

Query: 78  RRTQK----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
                       R++ R LS ++ + ++L    +  E     +   K   SLP+ L E  
Sbjct: 79  LHRDTGKTPSAGRTVARRLSALRQYYRFLVSEGLRAEDPAAVLDGPKPGRSLPKILTEAD 138

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++      +        R +A+L LLY  GLR+SE + L    +  D   L ++GK
Sbjct: 139 VALLLE----GAARRGGPEGRRLTALLELLYATGLRVSELVGLPLAALTRDGRALVVRGK 194

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGKP-LNPGVFQRYIR 248
           G K R+VPL    ++A+       P+ +        Q  LF        L    F + ++
Sbjct: 195 GGKERMVPLSQPAKEALAACLPDRPYFMVPGREARQQGLLFPSRSAAGVLTRQRFGQLMK 254

Query: 249 QLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +L   +GL P   + H LRH FATHLL +G DLRS+Q +LGH  + TTQIYT+V     G
Sbjct: 255 ELALEVGLDPGKVSPHVLRHCFATHLLDHGADLRSVQKMLGHADIGTTQIYTHV----AG 310

Query: 308 DWMMEIYDQTHPSITQK 324
           D +    +  HP   ++
Sbjct: 311 DRLRRTVETHHPLAKRR 327


>gi|134102479|ref|YP_001108140.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
 gi|133915102|emb|CAM05215.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
          Length = 325

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 85/306 (27%), Positives = 141/306 (46%), Gaps = 9/306 (2%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                + ++L+ ERGLS  T+++Y  D    L       EE+   + +  L  T +R ++
Sbjct: 27  AAVDGFERHLKAERGLSAHTVRAYIGDVVSLLDHFCAGDEER---KGLNGLGLTVLREWL 83

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           + +        +L R  +  ++F  +  + ++        +        LP  L  +QA 
Sbjct: 84  AAQHADGASRSTLARRAASARTFTAWAHRAELLPHDPGPRLAAPAPKRKLPTVLRAEQAK 143

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           + +         +   I  R+ A++ LLY  G+R+SE   L   ++  ++  +R+ GKGD
Sbjct: 144 SAMSASQAGA-EQGDPIALRDHAVVELLYATGVRVSELCGLDLDDVDHERRVVRVIGKGD 202

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K R VP       A+  +      +L  +   P LF G RG  L+P   +R +      +
Sbjct: 203 KERAVPFGVPAEDAVSRWISAGRPELATDASGPALFLGARGGRLDPRAVRRVVHDAVGAV 262

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
                   H LRHS ATHLL  G DLRS+Q +LGH  L+TTQ+YT+V  +     +  I+
Sbjct: 263 SGATDVGPHGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTHVTVER----LKAIH 318

Query: 315 DQTHPS 320
           D+THP 
Sbjct: 319 DRTHPR 324


>gi|254247398|ref|ZP_04940719.1| Phage integrase [Burkholderia cenocepacia PC184]
 gi|124872174|gb|EAY63890.1| Phage integrase [Burkholderia cenocepacia PC184]
          Length = 316

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 89/322 (27%), Positives = 143/322 (44%), Gaps = 20/322 (6%)

Query: 3   GNNLPEIVSFELLKERQN---WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
            +N  +  S  LL  R +   +   L +ERGL++ TL +Y  D   F  +LA   +    
Sbjct: 10  ADNDTDAASPALLASRASIDVFCDALWLERGLARNTLDAYRRDLALFSQWLAATHD---- 65

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
              +       +  +I+ R   K    S  R LS  + +  +  +    +    L + + 
Sbjct: 66  -APLDSADEAMVTGYIAARSDGK--ATSSNRRLSVFRRYYGWAVREHRASADPTLRITSA 122

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K+    P  L+E Q   L+             +  R+  +L L+Y  GLR+SE ++L   
Sbjct: 123 KQGARFPSTLSEAQVEALL-----GAPDIGTPLGLRDRTMLELMYASGLRVSELVTLKTV 177

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPL 238
            +  ++  +R+ GKG K R+VP        I  Y     P  L       LF   RG  +
Sbjct: 178 EVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGM 237

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
               F   I++  +   +    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIY
Sbjct: 238 TRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIY 297

Query: 299 TNVNSKNGGDWMMEIYDQTHPS 320
           T+V  +     +  ++ Q HP 
Sbjct: 298 THVARER----LRTLHAQHHPR 315


>gi|38234089|ref|NP_939856.1| site-specific tyrosine recombinase XerC [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200351|emb|CAE50037.1| Putative integrase/recombinase [Corynebacterium diphtheriae]
          Length = 302

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 84/319 (26%), Positives = 149/319 (46%), Gaps = 24/319 (7%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +  +L +   ++ + L++  G S  T++SY+ D   F+   A          T+ Q +  
Sbjct: 1   MPAQLTELVDDFCEYLDLGLGRSPATVRSYKSDLFGFVNRFA----------TLDQFTLD 50

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R ++++         ++ R  + IK+F  +L +           +   K   +LP  +
Sbjct: 51  NVREWLAQAVADGKSRATIARRTASIKAFSGWLLRNGYNDIDVAARLVAPKVQRTLPMVV 110

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +E+    +V+     T         R+ AI  LLY  G+R+SE   L   ++   + T R
Sbjct: 111 SERTMTNIVEKPASTTEDTF----VRDRAICELLYASGIRVSELCGLNTGDVDLKRQTAR 166

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-----LPLFRGIRGKPLNPGVFQ 244
           + GKG+K R+VP       A+  + +    ++ ++         LF G+RGK ++P   +
Sbjct: 167 VTGKGNKQRVVPFGDQATAALSHWLNGVRSEMLISAGCTSGVDALFVGVRGKRIDPRQVR 226

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R +    +  G+      H LRH+ ATHLL NG DLR +Q +LGH  L+TTQIYT+V+++
Sbjct: 227 RIVETSGQEHGIG-GLAPHALRHTAATHLLDNGADLRVVQEMLGHSSLNTTQIYTHVSTQ 285

Query: 305 NGGDWMMEIYDQTHPSITQ 323
                + E Y   HP   +
Sbjct: 286 R----LKEAYKNAHPRAQK 300


>gi|116619488|ref|YP_821644.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222650|gb|ABJ81359.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 303

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 93/316 (29%), Positives = 152/316 (48%), Gaps = 13/316 (4%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +P     EL ++   +L++L    G S+ ++++YE D RQFL FL+           I  
Sbjct: 1   MPSSEPSELERQIVLYLEDLARA-GNSEHSIRAYESDLRQFLAFLSPPDLAPPAPAAI-- 57

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
                +R +++      +   +L+R L+ ++   ++L +  +   +    +R  K    L
Sbjct: 58  -DLLILREWLAGLYRDDLSAVTLRRKLAAVRGLFRFLLREGVVPLNVACLVRTPKAPKKL 116

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P  +   Q  +L+D   +      +   AR+ AI  LLYGCG+R+SE   L  ++I   +
Sbjct: 117 PEVMTADQVNSLIDG--VGGVELERPHPARDRAIFELLYGCGIRVSELAGLNLEDIDRTE 174

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             LR++GKG K R VPL     +++  Y    P       Q  +F   R   L       
Sbjct: 175 GWLRVRGKGKKERQVPLPGQAAQSLERYLAERPV---AREQPAVFVNHRRARLTTRGISG 231

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            ++    YL        H+ RH++ATHLL++G DLR+IQ +LGH RLSTTQ YT V+  +
Sbjct: 232 IVKLYATYLSNDPGIHPHSFRHAYATHLLADGADLRAIQELLGHARLSTTQKYTQVSLTD 291

Query: 306 GGDWMMEIYDQTHPSI 321
               +M +YD+ HP  
Sbjct: 292 ----LMAVYDKAHPKA 303


>gi|114331554|ref|YP_747776.1| tyrosine recombinase XerC [Nitrosomonas eutropha C91]
 gi|114308568|gb|ABI59811.1| tyrosine recombinase XerC subunit [Nitrosomonas eutropha C91]
          Length = 321

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 104/330 (31%), Positives = 163/330 (49%), Gaps = 17/330 (5%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE---KI 58
           +  +LP + S  LL E   +L  L   R LS  T   Y  D    +       E    KI
Sbjct: 6   DKQDLPALPS--LLGE---YLTYLSSTRSLSVQTQHHYRRDLIALVRCTIAQHENGNNKI 60

Query: 59  TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
           +  ++ +L   +IR FI++  +  +  RSL R LS  + F +YL +      +  L++R 
Sbjct: 61  SDISLTRLHSHDIRHFIARLHSSGLSGRSLARMLSAWRGFYRYLIRHHHHNGNPCLDVRV 120

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            K  + LP AL+  +A  L    L         +  R+ AI  L Y  GLR++E   L P
Sbjct: 121 PKSPHKLPHALSPDEAAQL----LTFNPSSNDMLATRDLAIFELFYSSGLRLTELTQLQP 176

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
            +I     T+R+ GKG+K RIVP+     +A+  +  L    L +  +  LF   RG+ +
Sbjct: 177 TDIDFTGGTVRVTGKGNKTRIVPVGELALRALQAWLPLRSAWL-IPGETALFLSQRGRRI 235

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +P      + Q  +   L      HTLRHSFA+HLL + GDLR++Q +LGH  + +TQ+Y
Sbjct: 236 HPRTIAYRLHQRAQLQNLDSRVHPHTLRHSFASHLLQSSGDLRAVQEMLGHSSIRSTQVY 295

Query: 299 TNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           T+++ ++    + +IYDQ HP   +K K +
Sbjct: 296 THLDFQH----LAKIYDQAHPRARKKPKTD 321


>gi|197106796|ref|YP_002132173.1| integrase/recombinase XerC [Phenylobacterium zucineum HLK1]
 gi|196480216|gb|ACG79744.1| integrase/recombinase XerC [Phenylobacterium zucineum HLK1]
          Length = 308

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 125/315 (39%), Positives = 173/315 (54%), Gaps = 10/315 (3%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
                    R  WL  LE ER  S  TL++Y     ++L FL  +  E ++ + +  ++ 
Sbjct: 2   AAPLTAFDARAAWLGRLEHERRASPRTLEAYGFVVARYLAFLERHRGEALSAKDLGSVTA 61

Query: 69  TEIRAFISKRRTQK--IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
            E+RA+++  R+ +  +  RSL ++LS I++F ++L +R     + +  +R  +     P
Sbjct: 62  GEVRAWLAHLRSGETPLSPRSLSQALSAIRTFHRFLDRRLEIPNAAVGLVRGPRVKPGAP 121

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R ++E QA+ L+            W  AR+ A+L LLYGCGLRISEALSL   +    + 
Sbjct: 122 RPVSEDQAIGLIAEPAFD-PDREGWEAARDQAVLTLLYGCGLRISEALSLRRSDAPLPEQ 180

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            LRI GKG K RIVP+LP+VR+A+  Y    PF L  +   PLFR  RG PL+P   Q  
Sbjct: 181 -LRITGKGAKTRIVPVLPAVREAVDAYLTQVPFGLAPDE--PLFRAKRGGPLSPRHVQAT 237

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           ++QLR  LGLP S T H LRHSFATHLL  G DLRSIQ +LGH  LSTTQ YT V++   
Sbjct: 238 VQQLRGRLGLPASATPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQRYTEVDAAAL 297

Query: 307 GDWMMEIYDQTHPSI 321
                      HP  
Sbjct: 298 LSAYS----AAHPRA 308


>gi|264680261|ref|YP_003280171.1| phage integrase [Comamonas testosteroni CNB-2]
 gi|262210777|gb|ACY34875.1| phage integrase [Comamonas testosteroni CNB-2]
          Length = 348

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 93/342 (27%), Positives = 163/342 (47%), Gaps = 32/342 (9%)

Query: 1   MEGNNLP--EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI 58
           M+    P  E    +L +   ++L+++ +++ L++ T   Y  D  +   F     +E +
Sbjct: 1   MQEREQPSFEEQYAQLPEVVHSYLEHVRVQKRLAERTHTLYALDLIKLQSFAQAAAQELL 60

Query: 59  TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
           T+Q       + IR F ++        R +   LSG +SF ++  +R++   + +  +R 
Sbjct: 61  TLQ------PSHIRRFAAQMHGAGRSARGIALILSGWRSFFRWAAQRELVPFNPVEGVRG 114

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            K +  LP+AL    A+ L      H      W++AR+ A+  LLY CGLR++E + L  
Sbjct: 115 PKAAKPLPKALAVDDAVQLAS---FHNPEADPWMEARDVAMTELLYSCGLRVAELVGLDL 171

Query: 179 Q-----------NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC------PFDL 221
           +            I  +     +QGKG K RIVP+     +A+  +  L          L
Sbjct: 172 RPDQQSRHEGRGWIDLEAGDAHVQGKGSKRRIVPVGRMAIEALQRWLALRSSALVGTAQL 231

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
               +  LF G RG+ L+       ++Q  +  GL      H LRHSFA+H+L + GDLR
Sbjct: 232 KAQDEAALFVGRRGERLSAQSVWSRLKQRGQQAGLATGVHPHVLRHSFASHMLQSSGDLR 291

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
           ++Q +LGH  ++TTQIYT ++ ++    + + Y++ HP   +
Sbjct: 292 AVQELLGHSSIATTQIYTRLDFQH----LAQAYEKAHPRAQR 329


>gi|228475035|ref|ZP_04059763.1| tyrosine recombinase XerC [Staphylococcus hominis SK119]
 gi|228271020|gb|EEK12408.1| tyrosine recombinase XerC [Staphylococcus hominis SK119]
          Length = 297

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 79/313 (25%), Positives = 151/313 (48%), Gaps = 16/313 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + + ++ +L  L++ER  S  TL++Y  D  QF  FL         +  +R   Y + R 
Sbjct: 1   MEEIQKKFLNMLKVERNFSDHTLKAYHDDLAQFNQFLEQ------ELLNLRTFEYKDARN 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++S   +  +   ++ R +S +++F ++   +  +  +  + + + KK   LP+   E++
Sbjct: 55  YLSYLYSNNLKRTTVSRKISTLRTFYEFWMTQDTSVNNPFIQLVHPKKEQYLPQFFYEEE 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L      +T         R+  ++ LLY  G+R+SE +++   ++  +   +++ GK
Sbjct: 115 MEALF-----NTVSNDAKKGLRDRVVIELLYATGIRVSELVNIKVMDLDMNLPGVKVLGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R VP     R++I +Y       L       L   ++G P+     +  +  +   
Sbjct: 170 GNKERFVPFGEFCRQSIEQYL-EKFKPLKSKSHPYLIVNMKGDPITERGVRYLLNDVVER 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                    H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++     + ++
Sbjct: 229 TAGVTEIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ----LRKV 284

Query: 314 YDQTHPSITQKDK 326
           Y   HP   ++ K
Sbjct: 285 YLSAHPRAKKESK 297


>gi|81428597|ref|YP_395597.1| site-specific DNA-tyrosine recombinase, XerC [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78610239|emb|CAI55288.1| Site-specific DNA-tyrosine recombinase, XerC [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 303

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 147/305 (48%), Gaps = 16/305 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +LQ L ++R  S  T ++Y+ D + F+ FLA        + + +Q+   E++ ++++   
Sbjct: 11  FLQYLIVDRHYSPETQKAYQADIKAFVDFLAANG----GLTSFKQVGTLEVQTYLNEMDQ 66

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +K    ++ R +S ++SF +YL + +         ++  K+ + LPR   EK+   L   
Sbjct: 67  KKYSGETIARRISSLRSFYRYLIRNEFLQTDPFETVQLKKQRHKLPRFFYEKEMDALF-- 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                    + +  RN AIL LLY  G+R+SE   LT   I      + + GKG+K R V
Sbjct: 125 ---AAIVGQEPLTQRNRAILELLYATGMRVSECAQLTIGQIDFGLRVILVHGKGNKDRYV 181

Query: 201 PLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           P      KA+ +Y +     L          +F    G P+     +  + Q+ +   L 
Sbjct: 182 PFGNHATKALQDYLNDGRVQLMAKRQQEHDVVFVNHLGNPITSRGIEYALDQVDKKTCLT 241

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H +RH+FATHLL +G DLR++Q +LGH  LSTTQIYT+V + +    + + Y Q 
Sbjct: 242 SGIHPHMIRHTFATHLLDHGADLRTVQELLGHSSLSTTQIYTHVTTAH----LQKDYRQF 297

Query: 318 HPSIT 322
            P   
Sbjct: 298 FPRAK 302


>gi|282856243|ref|ZP_06265526.1| tyrosine recombinase XerC [Pyramidobacter piscolens W5455]
 gi|282586002|gb|EFB91287.1| tyrosine recombinase XerC [Pyramidobacter piscolens W5455]
          Length = 290

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 86/309 (27%), Positives = 145/309 (46%), Gaps = 22/309 (7%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           +  ++L+ L   +  S+ T+ +Y  D  QF  F+       +      +++   IRAF+ 
Sbjct: 4   QLDSFLEYLRNNKASSENTVTNYAVDLAQFADFVENQETGPL------EITTPLIRAFLR 57

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                   + S+ R LS +K+F  YL ++ +       ++R+ +    LPRAL+      
Sbjct: 58  SLAGFGYANSSIARKLSAVKAFELYLLEKGLIAADPAASIRSPRLPERLPRALSRDGIER 117

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+                RN  IL ++YGCG+R++E +SL   ++  D+  L+++GKGDK
Sbjct: 118 LIQEAWKIKP------CLRNGTILEVMYGCGVRVAELVSLRWDDVDVDERWLKVRGKGDK 171

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+VP     ++A+  +   C  +        LF G  G  +      R + Q  R  GL
Sbjct: 172 ERLVPFGRYAKEALTRWKAECLPEPG-----FLFPGKGGAAITVRTVHRLVVQAARNAGL 226

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + T H++RHSFATH+L  G  L  +Q +LGH  L TTQ Y  V   +    + + Y  
Sbjct: 227 E-NVTPHSVRHSFATHMLEGGASLNVLQELLGHESLLTTQRYLKVTPGH----LRDSYMA 281

Query: 317 THPSITQKD 325
            HP   +++
Sbjct: 282 AHPRSGEEE 290


>gi|85060322|ref|YP_456024.1| site-specific tyrosine recombinase XerC [Sodalis glossinidius str.
           'morsitans']
 gi|84780842|dbj|BAE75619.1| phage integrase [Sodalis glossinidius str. 'morsitans']
          Length = 303

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 79/312 (25%), Positives = 147/312 (47%), Gaps = 17/312 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L  +   +L  L +E  LS  T +SY+        +      +++ +   RQL  +++RA
Sbjct: 8   LQLQVDAFLHYLRVELQLSAKTRESYQRQL-----YTVIVLIDEMGLTEWRQLEVSQVRA 62

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             ++ + Q +   SL   LS ++SFL +L        +    +   +    LP+ ++  +
Sbjct: 63  LAARSKRQGLQSASLALRLSALRSFLDWLVSTDALGANPARGVSAPRHGRHLPKNMDVDE 122

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D            +  R+ A+L ++YG GLR++E + L   ++      +R+ GK
Sbjct: 123 VDHLLDI------DTRDPLALRDRAMLEVMYGAGLRLAELVGLNCADVDLGGGEVRVVGK 176

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R +P+  +    +  +  L   D        +F    G+ ++    Q+   +    
Sbjct: 177 GNKERKLPIGATAVTWLTRWLTLR--DRYAPKDDAVFIANSGRRISARNVQKRFAEWGVK 234

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+      H LRHSFATH+L + G+LR++Q +LGH  LSTTQIYT+++ ++    +  +
Sbjct: 235 QGVNSHIHPHKLRHSFATHMLESSGNLRAVQELLGHANLSTTQIYTHLDFQH----LASV 290

Query: 314 YDQTHPSITQKD 325
           YD  HP   ++ 
Sbjct: 291 YDAAHPRAKREK 302


>gi|314938036|ref|ZP_07845346.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a04]
 gi|314941978|ref|ZP_07848839.1| tyrosine recombinase XerC [Enterococcus faecium TX0133C]
 gi|314948769|ref|ZP_07852141.1| tyrosine recombinase XerC [Enterococcus faecium TX0082]
 gi|314951787|ref|ZP_07854826.1| tyrosine recombinase XerC [Enterococcus faecium TX0133A]
 gi|314991806|ref|ZP_07857264.1| tyrosine recombinase XerC [Enterococcus faecium TX0133B]
 gi|314995847|ref|ZP_07860934.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a01]
 gi|313589951|gb|EFR68796.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a01]
 gi|313593617|gb|EFR72462.1| tyrosine recombinase XerC [Enterococcus faecium TX0133B]
 gi|313596066|gb|EFR74911.1| tyrosine recombinase XerC [Enterococcus faecium TX0133A]
 gi|313599230|gb|EFR78075.1| tyrosine recombinase XerC [Enterococcus faecium TX0133C]
 gi|313642611|gb|EFS07191.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a04]
 gi|313644835|gb|EFS09415.1| tyrosine recombinase XerC [Enterococcus faecium TX0082]
          Length = 314

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 100/308 (32%), Positives = 154/308 (50%), Gaps = 19/308 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L+ L +ERG S+ T ++YE D   F  FL     E+     + +  Y  +R ++S  
Sbjct: 21  QKFLRYLIVERGYSEKTKEAYEEDILHFKHFL-----EESGDADLLKAEYFTVRVYLSAL 75

Query: 79  RTQK--IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              +      S+ R ++ ++SF +YL K ++  E+    +   KK+  LPR   E +   
Sbjct: 76  ADHRPSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQA 135

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L D+V          +D RN A+L +LYG G+R+SE  SL+  +I  D   + I GKG+K
Sbjct: 136 LFDSV-----AGDSPLDLRNRALLEVLYGSGIRLSECSSLSVSDIDFDSEVMLIHGKGNK 190

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            R  PL    + A+ EY+      L          +F    GKP+ P   +  + Q+ + 
Sbjct: 191 ERYAPLGSFAQDALQEYFREGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQMIKK 250

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRH+FATHLL+NG DLR++Q +LGH  LSTTQIY +V  ++    + + 
Sbjct: 251 SSLDSDIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKES----LQKN 306

Query: 314 YDQTHPSI 321
           Y   HP  
Sbjct: 307 YRSFHPRA 314


>gi|317486704|ref|ZP_07945521.1| phage integrase [Bilophila wadsworthia 3_1_6]
 gi|316922087|gb|EFV43356.1| phage integrase [Bilophila wadsworthia 3_1_6]
          Length = 339

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 102/327 (31%), Positives = 162/327 (49%), Gaps = 24/327 (7%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           ++ + +L  +  ++G S  T+ +Y  D  QF  +L     E+ ++    +L     + + 
Sbjct: 13  QDVEQFLTWMTDQKGFSPATISAYRTDLLQFEEWL---HREQHSLARPGELEKYHFQDYS 69

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +     S+ R LS ++S  +YL K K   ++    +RN K+    P ALN  Q  
Sbjct: 70  AHLFHEGQARSSIGRKLSALRSLFRYLMKMKKIDKNPAKLVRNPKRELRHPTALNVDQMF 129

Query: 136 TLVDNVLLHT----------------SHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           TL+D   + +                +        R+ A+  LLYG GLRISEAL L   
Sbjct: 130 TLLDEASVESGGAAGLDGSRQAEQTVTDREHAGHTRDLALAELLYGSGLRISEALDLDVD 189

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           ++      +R+ GKG K RI PL  +  +A+  +  +    +    +  LF G RGK LN
Sbjct: 190 DVDPASGFIRVIGKGSKERIAPLSDTSVRALFLWLRVR-ALIAPPAEKALFVGNRGKRLN 248

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                R + ++R+  GLP   + HTLRH+FATH+L NG D+RS+Q +LGH  LSTTQ YT
Sbjct: 249 RRQAARILDEIRKSAGLPQHLSPHTLRHTFATHMLENGADMRSVQELLGHASLSTTQRYT 308

Query: 300 NVNSKNGGDWMMEIYDQTHPSITQKDK 326
           ++      D +M +YD+ HP  + + K
Sbjct: 309 HIT----LDHLMRVYDKAHPRSSVRGK 331


>gi|59800504|ref|YP_207216.1| putative site-specific recombinase [Neisseria gonorrhoeae FA 1090]
 gi|194097632|ref|YP_002000668.1| putative site-specific recombinase [Neisseria gonorrhoeae
           NCCP11945]
 gi|239998167|ref|ZP_04718091.1| putative site-specific recombinase [Neisseria gonorrhoeae 35/02]
 gi|240013349|ref|ZP_04720262.1| putative site-specific recombinase [Neisseria gonorrhoeae DGI18]
 gi|240015794|ref|ZP_04722334.1| putative site-specific recombinase [Neisseria gonorrhoeae FA6140]
 gi|240079931|ref|ZP_04724474.1| putative site-specific recombinase [Neisseria gonorrhoeae FA19]
 gi|240112137|ref|ZP_04726627.1| putative site-specific recombinase [Neisseria gonorrhoeae MS11]
 gi|240114883|ref|ZP_04728945.1| putative site-specific recombinase [Neisseria gonorrhoeae PID18]
 gi|240117087|ref|ZP_04731149.1| putative site-specific recombinase [Neisseria gonorrhoeae PID1]
 gi|240120422|ref|ZP_04733384.1| putative site-specific recombinase [Neisseria gonorrhoeae PID24-1]
 gi|240122724|ref|ZP_04735680.1| putative site-specific recombinase [Neisseria gonorrhoeae PID332]
 gi|240124914|ref|ZP_04737800.1| putative site-specific recombinase [Neisseria gonorrhoeae
           SK-92-679]
 gi|254492944|ref|ZP_05106115.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 1291]
 gi|260441302|ref|ZP_05795118.1| putative site-specific recombinase [Neisseria gonorrhoeae DGI2]
 gi|268594018|ref|ZP_06128185.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 35/02]
 gi|268596071|ref|ZP_06130238.1| tyrosine recombinase xerC [Neisseria gonorrhoeae FA19]
 gi|268598196|ref|ZP_06132363.1| tyrosine recombinase xerC [Neisseria gonorrhoeae MS11]
 gi|268600541|ref|ZP_06134708.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID18]
 gi|268602774|ref|ZP_06136941.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID1]
 gi|268681323|ref|ZP_06148185.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID332]
 gi|268683494|ref|ZP_06150356.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-92-679]
 gi|291044658|ref|ZP_06570367.1| tyrosine recombinase xerC [Neisseria gonorrhoeae DGI2]
 gi|293397766|ref|ZP_06641972.1| tyrosine recombinase XerC [Neisseria gonorrhoeae F62]
 gi|75356483|sp|Q5FAI3|XERC_NEIG1 RecName: Full=Tyrosine recombinase xerC
 gi|254799349|sp|B4RNW5|XERC_NEIG2 RecName: Full=Tyrosine recombinase xerC
 gi|59717399|gb|AAW88804.1| putative site-specific recombinase [Neisseria gonorrhoeae FA 1090]
 gi|193932922|gb|ACF28746.1| putative site-specific recombinase [Neisseria gonorrhoeae
           NCCP11945]
 gi|226511984|gb|EEH61329.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 1291]
 gi|268547407|gb|EEZ42825.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 35/02]
 gi|268549859|gb|EEZ44878.1| tyrosine recombinase xerC [Neisseria gonorrhoeae FA19]
 gi|268582327|gb|EEZ47003.1| tyrosine recombinase xerC [Neisseria gonorrhoeae MS11]
 gi|268584672|gb|EEZ49348.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID18]
 gi|268586905|gb|EEZ51581.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID1]
 gi|268621607|gb|EEZ54007.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID332]
 gi|268623778|gb|EEZ56178.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-92-679]
 gi|291011552|gb|EFE03548.1| tyrosine recombinase xerC [Neisseria gonorrhoeae DGI2]
 gi|291611712|gb|EFF40781.1| tyrosine recombinase XerC [Neisseria gonorrhoeae F62]
 gi|317163457|gb|ADV06998.1| putative site-specific recombinase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 305

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 85/309 (27%), Positives = 146/309 (47%), Gaps = 13/309 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L+N+  E G S+ T+ +Y  D  +    LA    E       + LS  +  A + +
Sbjct: 10  FDAYLENIVRE-GKSEHTVAAYRRDLEELFALLAQMPSEDAG-GVPQDLSRRDFTAALRR 67

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + +  R+L R LS  + +  +L KR +       +++  K+   +P+AL ++    +
Sbjct: 68  LSQRGLDGRTLARKLSAWRQYCAWLVKRGLMRADPTADIKPPKQPERVPKALPQEWLNRM 127

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D  +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GKG K 
Sbjct: 128 LDLPV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQ 183

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R VPL     +A+  Y  L     +      LF G  G  L+    Q+ +       G  
Sbjct: 184 RQVPLTGKSVEALKNYLPLRQTASDGK---ALFTGRNGTRLSQRQIQKRLESWAAQYGDG 240

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +YD+ 
Sbjct: 241 RHVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEA 296

Query: 318 HPSITQKDK 326
           HP   ++D+
Sbjct: 297 HPRAKRQDE 305


>gi|227551195|ref|ZP_03981244.1| site-specific recombinase XerD [Enterococcus faecium TX1330]
 gi|227179663|gb|EEI60635.1| site-specific recombinase XerD [Enterococcus faecium TX1330]
          Length = 314

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 99/308 (32%), Positives = 154/308 (50%), Gaps = 19/308 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L+ L +ERG S+ T ++YE D   F  FL     E+     + +  Y  +R ++S  
Sbjct: 21  QKFLRYLIVERGYSEKTKEAYEEDILHFKHFL-----EESGDADLLKAEYFTVRVYLSAL 75

Query: 79  RTQK--IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              +      S+ R ++ ++SF +YL K ++  E+    +   KK+  LPR   E +   
Sbjct: 76  ADHRPSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQA 135

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L D+V   +      +D RN A+L +LYG G+R+SE  +L   +I  D   + I GKG+K
Sbjct: 136 LFDSVAGDSP-----LDLRNRALLEVLYGSGIRLSECSNLLVSDIDFDSEVMLIHGKGNK 190

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            R  PL    + A+ EY+      L          +F    GKP+ P   +  + Q+ + 
Sbjct: 191 ERYAPLGSFAQDALQEYFTEGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQIIKK 250

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRH+FATHLL+NG DLR++Q +LGH  LSTTQIY +V  ++    + + 
Sbjct: 251 SSLDSDIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKES----LQKN 306

Query: 314 YDQTHPSI 321
           Y   HP  
Sbjct: 307 YRSFHPRA 314


>gi|307565005|ref|ZP_07627522.1| putative tyrosine recombinase XerD [Prevotella amnii CRIS 21A-A]
 gi|307346318|gb|EFN91638.1| putative tyrosine recombinase XerD [Prevotella amnii CRIS 21A-A]
          Length = 310

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 91/310 (29%), Positives = 155/310 (50%), Gaps = 16/310 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            + + L++E+G S+ T+ +Y  D  +   FL     EKI +  +R     ++  F +   
Sbjct: 14  KFRRYLKLEKGYSEHTIDAYMRDIEKLSSFLEA---EKIDVLDVR---LEDLERFTACMS 67

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              IG RSL R LSGI+ F ++L             + + K+   LP  L+  +   +++
Sbjct: 68  ELGIGARSLSRVLSGIRHFYRFLILDGYLEIDPTELLESPKQPKHLPEVLSTAEVDIILN 127

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           ++ L     TKW   RN AI+ +L+ CGLR+SE  SL   N+   +  +RI GKG K R+
Sbjct: 128 SIDL-----TKWEGQRNKAIIEVLFSCGLRVSELTSLKISNLYFQEQYVRIMGKGSKERL 182

Query: 200 VPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+ P   + +  +  D     +       +F   RG  L   +    +++     G+  
Sbjct: 183 VPISPRAIEELNYWFLDRSQMKIKEGEDDYVFLNRRGSHLTRTMILIMLKRYAYAAGIKK 242

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + + HTLRHSFAT LL  G DLRSIQ++LGH  + TT++YT++++ +    + +     H
Sbjct: 243 TISPHTLRHSFATALLEGGADLRSIQAMLGHESIVTTELYTHLDTTS----LRQEILNHH 298

Query: 319 PSITQKDKKN 328
           P   +  +++
Sbjct: 299 PRNIRYREEH 308


>gi|319892267|ref|YP_004149142.1| Site-specific tyrosine recombinase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161963|gb|ADV05506.1| Site-specific tyrosine recombinase [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 303

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 86/312 (27%), Positives = 152/312 (48%), Gaps = 16/312 (5%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           FEL + ++ +L  L+ ER  S  TL++Y  D  QF  FLA   +E++++   + +     
Sbjct: 6   FELKQIQEQFLDMLKRERFFSDHTLKAYHDDLVQFNRFLA---QEQLSLTAFKYIDA--- 59

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           R ++       +   ++ R +S ++SF  +   +     +  + + + KK   LP     
Sbjct: 60  RNYLQTLYDLGLQRTTVSRKISTLRSFYAFWMTQDHEIVNPFVQLVHPKKERYLPTFFYT 119

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           ++   L   V+     +      R+  IL L Y  G+R+SE +SL  +++  +   +++ 
Sbjct: 120 EEMEALFQTVM-----QDAHKGLRDRVILELFYATGIRVSELVSLKTEDVDLEMCWIKVL 174

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG K RIVP     R++I +Y        N+     L   ++G+P+     +  +  + 
Sbjct: 175 GKGGKERIVPFGEFCRQSIEQYLAEFAPIQNVQ-HPYLITNLKGQPITERGVRYVLNDIV 233

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +      S   H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V ++     + 
Sbjct: 234 KRTAGVTSIHPHKLRHTFATHLLNEGADLRTVQSLLGHVNLSTTGRYTHVTNQQ----LR 289

Query: 312 EIYDQTHPSITQ 323
            +Y Q HP   +
Sbjct: 290 NVYLQAHPRAKK 301


>gi|170760942|ref|YP_001787191.1| tyrosine recombinase XerD [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407931|gb|ACA56342.1| tyrosine recombinase XerD [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 291

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 162/304 (53%), Gaps = 17/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +N++++L+ ++ LSK TL++Y  D  +F  F+    E+ +++ T+       I AF+  
Sbjct: 5   IENYIKDLQ-KKNLSKNTLEAYRRDVEKFSEFVRNREEKMLSVDTVT------IMAFVQY 57

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            + +     S+ R++  I++F KYL K+ + +E   L     K   ++P+ L+ ++   L
Sbjct: 58  LQREGRATSSIVRNIVSIRNFYKYLIKKNMISEDPTLGYEIPKIERTIPKILSVEEVDKL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++      S ++     R+ A+L L+Y  G++I+E L+L   +I    + ++ +G   + 
Sbjct: 118 LN------SPDSSKKGLRDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRE 171

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RI+P+     K +  Y ++ P  +N+     LF  ++G  +    F + I+   +   + 
Sbjct: 172 RIIPIGSYAIKCLKNYLEVRP-AINVYNLDYLFLNLKGTQMTRQGFWKIIKFYAKEASID 230

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
               ++TLRHSFA HLL NG D++S+Q +LGH  L+ TQIY++++ K+    + E+Y   
Sbjct: 231 KEIDSYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKS---KIAEVYKNA 287

Query: 318 HPSI 321
           HP  
Sbjct: 288 HPRA 291


>gi|260771883|ref|ZP_05880801.1| site-specific recombinase XerD [Vibrio metschnikovii CIP 69.14]
 gi|260613175|gb|EEX38376.1| site-specific recombinase XerD [Vibrio metschnikovii CIP 69.14]
          Length = 302

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 91/306 (29%), Positives = 152/306 (49%), Gaps = 17/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + +ERGL++ TL SY  D  + L+++  +         +  +S   +  + S 
Sbjct: 12  VEQFLDAMWMERGLAENTLMSYRNDLTKLLLWMEQHDYR------LDFISLAGLLEYQSW 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q     S  R LS ++   +YL + K+ ++     + + K    LP+ L+E+Q   L
Sbjct: 66  LTDQDYKQTSRARMLSALRRLFQYLHREKVRSDDPSALLVSPKLPQRLPKDLSEEQVEAL 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L+       ++ R+ A+L LLY  GLR++E +SLT +NI   Q  +R+ GKG K 
Sbjct: 126 -----LNAPDPNDPLELRDKAMLELLYATGLRVTELISLTMENISLRQGVVRVVGKGGKE 180

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+  +  + I  +        L  N    +F   R + +    F   I+      G+
Sbjct: 181 RLVPMGENAIEWIETFIAQGRLHLLGDNTSDVVFPSKRAQQMTRQTFWHRIKYYAVIAGI 240

Query: 257 PL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            +   + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++     + +I+ 
Sbjct: 241 DVEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIHS 296

Query: 316 QTHPSI 321
           + HP  
Sbjct: 297 EHHPRA 302


>gi|258508408|ref|YP_003171159.1| tyrosine recombinase XerD [Lactobacillus rhamnosus GG]
 gi|257148335|emb|CAR87308.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus GG]
          Length = 299

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 86/308 (27%), Positives = 147/308 (47%), Gaps = 12/308 (3%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++K    + + L +ER  S  T+ +Y  D ++F  FL              ++   +++ 
Sbjct: 1   MMKPLAAFQEYLTVERQYSPETVTAYLNDIQEFQAFLKANG----GFTDFSKVDDLDVQT 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++    Q +   S+ R +S ++SF +YL +  +   +    +   K+ + LP+   E +
Sbjct: 57  YLTDLNKQALARTSIARKISSLRSFYRYLVRIDVVKRNPFELVELKKQHHHLPQFFYEAE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L       T      +D RN A+L +LYG G+R+SE  +LT   +  +   L I GK
Sbjct: 117 IQELF-----KTVEGKTPLDQRNRALLEVLYGTGIRVSECANLTLNQVDFNTGLLLIHGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI---QLPLFRGIRGKPLNPGVFQRYIRQL 250
           G+K R VP     ++A+  Y       L          +F    G+P+     +  + QL
Sbjct: 172 GNKDRYVPFGRYAQRALQTYLKDGRQTLMNKRDVQHRFVFVNQYGRPITARGIEYILDQL 231

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +   L  +   H LRHSFATH+L +G DLR++Q +LGH  LSTTQIYT+V   +  +  
Sbjct: 232 IKQTSLIANIHPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEY 291

Query: 311 MEIYDQTH 318
           M+ Y + +
Sbjct: 292 MKYYPKHN 299


>gi|161485706|ref|NP_643858.2| site-specific tyrosine recombinase XerD [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 323

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 90/326 (27%), Positives = 146/326 (44%), Gaps = 24/326 (7%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
             +LP +   +     + +L     E+G+++ TL+SY  D      +        + I  
Sbjct: 13  ARHLPPVQPAD-ASVIERFLDRFWAEQGVARQTLESYRRDLEGLARWRDGAGGGLLGI-- 69

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
                   +  ++  R       RS  R LS +++F     +    ++     +      
Sbjct: 70  ----DRAALFDYLRWRTRANYSPRSTARLLSTLRAFYGLCLRDGARSDDPTALIDPPHLP 125

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            SLP+AL E Q   L+                R+ A+L L+Y  GLR+SE ++L    + 
Sbjct: 126 RSLPKALTESQIEALL-----AAPDLDTPAGLRDRAMLELMYAAGLRVSELVNLPAVGVN 180

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-------QLPLFRGIRG 235
             Q  LR+ GKG K R+VPL    +  +  Y       L  N        Q+PLF  +  
Sbjct: 181 LRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARPLLAANKPVAAVDGQVPLFIDVSR 240

Query: 236 KPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           +PL+   F   +++     G+ P + + H LRHSFATHLL++G DLR++Q +LGH  LST
Sbjct: 241 QPLSRQQFWALVKRYAAVAGIDPATVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLST 300

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPS 320
           TQIYT V  ++    + +++   HP 
Sbjct: 301 TQIYTLVARQH----LQKLHASHHPR 322


>gi|48428759|gb|AAT42408.1| site-specific recombinase XerC [Collimonas fungivorans Ter331]
          Length = 324

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 81/317 (25%), Positives = 147/317 (46%), Gaps = 23/317 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L  +R LS  T+ +Y  D ++         +          +++  IR F ++  +
Sbjct: 13  YLDSLAGQRQLSAHTISNYGRDLKELASLTQALGDN----WQFAAITHFHIRKFAAQLHS 68

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   S+ R LS  + F ++L ++     + +  ++  K++  LP+A+    A+ LV +
Sbjct: 69  RGLNPSSIARKLSAWRGFFEWLAEQTTLASNPVEGVKAPKRTKPLPKAMAADDAIHLVAS 128

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP-----------QNIMDDQSTLR 189
                   +  +   N A+  LLY  GLR+SE   L               I  D + + 
Sbjct: 129 GNPLADAGSS-MALCNQAMFELLYSSGLRVSELAGLDLHYSRQPDHESAGWIDLDAAEVT 187

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRY 246
           + GKG K R VP+     +AI  +       L  +       LF   RG  ++P V Q  
Sbjct: 188 VTGKGGKKRSVPVGKPAIQAIAAWLPQRAALLKSDQGEHAAALFLTERGTRVSPRVVQLR 247

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           ++   + LG+  +   H LRHSFA+H+L   GDLR++Q +LGH  ++ TQ+YT+++ +  
Sbjct: 248 LKHHAQSLGIASNVHPHVLRHSFASHMLQGSGDLRAVQELLGHASIAATQVYTSLDFQR- 306

Query: 307 GDWMMEIYDQTHPSITQ 323
              + ++YD  HP   +
Sbjct: 307 ---LAQVYDAAHPRAKK 320


>gi|312127184|ref|YP_003992058.1| tyrosine recombinase xerd [Caldicellulosiruptor hydrothermalis 108]
 gi|311777203|gb|ADQ06689.1| tyrosine recombinase XerD [Caldicellulosiruptor hydrothermalis 108]
          Length = 291

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 79/308 (25%), Positives = 143/308 (46%), Gaps = 18/308 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +   + +  +L+ +   S+ T+ SY  D ++++ FL     + I I+ +   S   + A+
Sbjct: 1   MSIIEAFGNHLQRQNRFSQNTISSYLRDAKKYIEFL-----DNIKIK-LENTSQATLIAY 54

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I   +     + ++ R++  +K F  +LK + I     I  +   K   S P+ L   + 
Sbjct: 55  IISMQKSGKSNSTIARAIVSLKVFYDFLKIQNIVDIGKIE-IEPPKLEKSPPQILTRDEV 113

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+         E      R+ A+L LLY  G+R+SE ++L   +I  +   +  + K 
Sbjct: 114 EKLL-----SCPKEDDIKGIRDKAMLELLYATGIRVSELINLNLDDINLEHGYIICKNKK 168

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
              R++P+      A+ +Y     P+      +  LF    G+ +    F + ++   + 
Sbjct: 169 R-DRVIPIGSYAISAVEKYLRHSRPYLAKNKDEEALFLNFNGERMTRQGFWKIVKFYAQS 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    T H LRHSFATHL+ NG D+R++Q +LGH  +STTQ Y  V +      + E+
Sbjct: 228 AGIDKEITPHVLRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVAN----VKLKEV 283

Query: 314 YDQTHPSI 321
           Y +THP  
Sbjct: 284 YQKTHPRA 291


>gi|332528836|ref|ZP_08404810.1| phage integrase [Hylemonella gracilis ATCC 19624]
 gi|332041695|gb|EGI78047.1| phage integrase [Hylemonella gracilis ATCC 19624]
          Length = 369

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 86/327 (26%), Positives = 151/327 (46%), Gaps = 34/327 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L ++ +E+ L++ T++ Y  D  +   F            ++ Q+    +R +I++  
Sbjct: 40  QYLAHVRVEKRLAQRTVELYTLDLDKLGEFARQAG------VSLLQVHSAHVRRWIAQMH 93

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV- 138
                 R +   LSG + F  +L ++   T + + ++R  K +  LP+AL+   A+ L  
Sbjct: 94  AGGRSGRGIALILSGWRGFYAWLGRQGYITSNPVQDVRAPKAAKPLPKALSVDDAVRLAS 153

Query: 139 --------DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP-----------Q 179
                   D        +  W  AR++A+  LLY  GLR+SE   L              
Sbjct: 154 YRGGESGADTPQGDALDDDPWFSARDAAMTELLYSSGLRVSELTGLDVAPSEAARKAGRG 213

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRG 235
            +      + +QGKG K R VP+  + RKA+L++ ++    ++     + Q  LF G  G
Sbjct: 214 WLDLQAGEVEVQGKGGKRRAVPVGTAARKALLQWLEVRGQGVSAAALQDGQTALFIGRNG 273

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             L P    + +++     GL      H LRHSFA+H+L + GDLR++Q +LGH  + TT
Sbjct: 274 TRLTPQSIWQRLKRRSLLAGLATPVHPHMLRHSFASHVLQSSGDLRAVQELLGHANIGTT 333

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           Q+YT ++ ++    +   YD  HP   
Sbjct: 334 QVYTRLDFQH----LARAYDDAHPRAK 356


>gi|150026059|ref|YP_001296885.1| tyrosine recombinase XerD [Flavobacterium psychrophilum JIP02/86]
 gi|149772600|emb|CAL44083.1| Tyrosine recombinase XerD [Flavobacterium psychrophilum JIP02/86]
          Length = 299

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 96/307 (31%), Positives = 157/307 (51%), Gaps = 16/307 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             ++   L+IERGLSK ++ +Y  D  +   +L   ++  I +  +  ++   I+ FI  
Sbjct: 7   INSFKSYLKIERGLSKNSVANYVLDIEKLNHYL---SDNNIHVSPVN-INEQTIQQFI-Y 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             ++ +  RS  R++SG+KSF  YL       ++ +  +   +    LP  LN +    L
Sbjct: 62  EISKSVNPRSQARTISGLKSFFSYLIFEDYRPDNPLALIETPRLGRKLPDTLNIEDIDKL 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +  + L T+   +     N A+L  LY CGLR+SE +SL   ++   +  ++I GKG+K 
Sbjct: 122 IAAINLTTNEGER-----NRAMLETLYACGLRVSELVSLKISDLFFAEGFIKITGKGNKQ 176

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R VP+    +K I  Y +     L++    +  LF   RG+ L   +    I+ L   +G
Sbjct: 177 RFVPISEYTQKYIEIYKNTDRNLLSIQKGHEDTLFLNRRGRQLTRAMIFTIIKNLAVEIG 236

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L    + HT RHSFATHLL NG DLRSIQ +LGH  ++TT+IY +V+ K+    + ++  
Sbjct: 237 LNKVISPHTFRHSFATHLLENGADLRSIQLMLGHESITTTEIYMHVDRKH----LSQVMQ 292

Query: 316 QTHPSIT 322
             HP   
Sbjct: 293 TFHPRSK 299


>gi|89902211|ref|YP_524682.1| phage integrase [Rhodoferax ferrireducens T118]
 gi|89346948|gb|ABD71151.1| phage integrase [Rhodoferax ferrireducens T118]
          Length = 337

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 89/324 (27%), Positives = 149/324 (45%), Gaps = 30/324 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+++ +E+ L++ T++ Y  D ++     A    E      + Q+  + IR ++++
Sbjct: 22  VERYLEHVRVEKRLAQRTVELYALDLQKLSQQAAQAGVE------LLQVQNSHIRRWVAQ 75

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                   R +   LSG + F  +L +  + + + + ++R  K    LP+AL+  QA+ L
Sbjct: 76  MNAGGRSGRGIALILSGWRGFYVWLGREGLISSNPVQDVRAPKAGKPLPKALSVDQAVQL 135

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP-------QNIMDDQSTLRI 190
                  +     W++AR++A++ LLYG GLR+ E   L           I        +
Sbjct: 136 AS---FASGSNDPWLEARDAAMVELLYGAGLRVGELTGLDTVASSSARGWIDLQGGEAHV 192

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDL----------NLNIQLPLFRGIRGKPLNP 240
            GKG K R VP+      AI  +  L    L            N Q  LF G  G  L+ 
Sbjct: 193 LGKGGKRRSVPVGAKAVLAITHWLALRDQALAQAKPGLQGPGGNAQAALFMGRNGTRLSA 252

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               + +RQ     GL      H LRHSFA+HLL +  DLR++Q +LGH  ++TTQ YT 
Sbjct: 253 QSIWQRLRQRSLQAGLTTPVHPHMLRHSFASHLLQSSSDLRAVQELLGHASITTTQAYTR 312

Query: 301 VNSKNGGDWMMEIYDQTHPSITQK 324
           ++ ++    + + YD  HP    K
Sbjct: 313 LDFQH----LAKAYDAAHPRAKIK 332


>gi|116494889|ref|YP_806623.1| integrase [Lactobacillus casei ATCC 334]
 gi|191638400|ref|YP_001987566.1| Tyrosine recombinase xerC [Lactobacillus casei BL23]
 gi|301066449|ref|YP_003788472.1| integrase [Lactobacillus casei str. Zhang]
 gi|122263693|sp|Q039E1|XERC_LACC3 RecName: Full=Tyrosine recombinase xerC
 gi|254799345|sp|B3WEA7|XERC_LACCB RecName: Full=Tyrosine recombinase xerC
 gi|116105039|gb|ABJ70181.1| tyrosine recombinase XerC subunit [Lactobacillus casei ATCC 334]
 gi|190712702|emb|CAQ66708.1| Tyrosine recombinase xerC [Lactobacillus casei BL23]
 gi|300438856|gb|ADK18622.1| Integrase [Lactobacillus casei str. Zhang]
 gi|327382429|gb|AEA53905.1| Site-specific recombinase [Lactobacillus casei LC2W]
 gi|327385628|gb|AEA57102.1| Site-specific recombinase [Lactobacillus casei BD-II]
          Length = 298

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 89/307 (28%), Positives = 148/307 (48%), Gaps = 12/307 (3%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +K    + + LE+ER  S  T+ +Y  D ++F  FL             R +   +++ +
Sbjct: 1   MKPIAAFQEYLEVERQYSPETVTAYLSDLQEFQAFLKANG----GFTDFRHVDDLDVQTY 56

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++    Q +   S+ R +S ++SF +YL +  +   +    +   K+ + LP+   E + 
Sbjct: 57  LTDLNKQDLARTSIARKISSLRSFYRYLTRIDVVKRNPFELVELKKQHHHLPQFFYEAEI 116

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L       T      +D RN A+L +LYG G+R+SE   LT   +  + + L I GKG
Sbjct: 117 QELF-----KTVAGKTPLDQRNRALLEVLYGTGIRVSECAKLTLNQVDFNTALLLIHGKG 171

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQLR 251
           +K R VP     ++A+  Y       L    Q     +F    G+P+     +  + QL 
Sbjct: 172 NKDRYVPFGQYAQQALRTYLKDGRQVLMAKSQAQHRYVFVNQYGRPITSRGIEYILDQLI 231

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +   L  +   H LRHSFATH+L +G DLR++Q +LGH  LSTTQIYT+V   +  +  M
Sbjct: 232 KQTTLTANIHPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYM 291

Query: 312 EIYDQTH 318
           + Y + +
Sbjct: 292 KYYPKHN 298


>gi|282853638|ref|ZP_06262975.1| tyrosine recombinase XerD [Propionibacterium acnes J139]
 gi|282583091|gb|EFB88471.1| tyrosine recombinase XerD [Propionibacterium acnes J139]
 gi|314967052|gb|EFT11151.1| tyrosine recombinase XerD [Propionibacterium acnes HL082PA2]
 gi|314983153|gb|EFT27245.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA3]
 gi|315092375|gb|EFT64351.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA4]
 gi|315103783|gb|EFT75759.1| tyrosine recombinase XerD [Propionibacterium acnes HL050PA2]
 gi|327327186|gb|EGE68962.1| tyrosine recombinase XerD [Propionibacterium acnes HL103PA1]
          Length = 306

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 91/312 (29%), Positives = 147/312 (47%), Gaps = 21/312 (6%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           + +++L++L +ERGLS  T+Q+Y  D  ++  +L         I ++ +++  ++  F  
Sbjct: 8   QVEDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLGSR-----GIGSLAEVTRVDVEEFRR 62

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                 +   S+ R +  +++  ++              M    +S  LP+AL   Q  +
Sbjct: 63  HLDHIGLAPASVTRCVVAVRNLHRFAVGSGQVQADVTAGMSPGTRSRRLPKALTMDQVES 122

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----MDDQSTLRIQG 192
           L     L     +     R++A+L LLYG G R+SE  +L   +I     D    LR+ G
Sbjct: 123 L-----LAAPDTSTVEGLRDAALLELLYGTGARVSEVCALDVDDIRRVLDDPDLGLRLIG 177

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLN--LNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           KGDK RIVPL     KA+  +            N +  L    RG+ L+       IR+ 
Sbjct: 178 KGDKERIVPLGSYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRRA 237

Query: 251 RRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
               GL +   + H+LRHS+ATHLL  G D+R +Q +LGH  ++TTQIYT V      D 
Sbjct: 238 GEAAGLDVEHLSPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVT----ADH 293

Query: 310 MMEIYDQTHPSI 321
           + E+Y  +HP  
Sbjct: 294 LREVYRSSHPRA 305


>gi|325917722|ref|ZP_08179910.1| tyrosine recombinase XerD subunit [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536051|gb|EGD07859.1| tyrosine recombinase XerD subunit [Xanthomonas vesicatoria ATCC
           35937]
          Length = 337

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 90/327 (27%), Positives = 151/327 (46%), Gaps = 24/327 (7%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
               LP + + +     + +L  L  E+G+++ TL SY  D      +        + I 
Sbjct: 26  RTQQLPPVQAAD-AAAIERFLDRLWAEQGVARQTLDSYRRDLEGLARWRDGAGGGLLGI- 83

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
                  + +  ++  R   +   RS  R LS +++F     +  + ++     +   + 
Sbjct: 84  -----DRSVLFDYLRWRTEARYSPRSNARLLSTLRAFYGLCLRDGVRSDDPTALLDPPRL 138

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
             SLP+AL E Q   L     L        +  R+ A+L L+Y  GLR+SE ++L    +
Sbjct: 139 PRSLPKALTETQIDAL-----LAAPDIQTPLGLRDRAMLELMYAAGLRVSELVNLPAVGV 193

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-------LNIQLPLFRGIR 234
              Q  LR+ GKG K R+VPL    +  +  Y       L        ++ Q+PLF    
Sbjct: 194 NLRQGVLRVTGKGSKERLVPLGEESQHWLERYLHEARPLLADHKAVAAVDGQVPLFIDAA 253

Query: 235 GKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            +P +   F   +++     G+ P + + H LRHSFATHLL++G DLR++Q +LGH  LS
Sbjct: 254 RQPPSRQHFWALVKRYAAVAGIDPATVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLS 313

Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           TTQIYT V  ++    + +++ + HP 
Sbjct: 314 TTQIYTLVARQH----LQKLHAKHHPR 336


>gi|266621718|ref|ZP_06114653.1| integrase/recombinase XerD [Clostridium hathewayi DSM 13479]
 gi|288866619|gb|EFC98917.1| integrase/recombinase XerD [Clostridium hathewayi DSM 13479]
          Length = 295

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 73/308 (23%), Positives = 138/308 (44%), Gaps = 15/308 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++ E   +++ L   +  SK T  SY  D  Q   +L     E+  I  + +++ T + +
Sbjct: 1   MVTEINEFVKYLREVKKTSKNTEVSYHRDLLQMASYL-----EEQGITDVEKVTKTSLNS 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++     +     ++ R+L+ +K+F  Y              ++  K     P  L  ++
Sbjct: 56  YVLHLEKEGRATTTISRTLASMKAFFHYEYGEGRIRRDPAELIKAPKIEKKAPTILTVEE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
             +L++             + R+ A+L LLY  G+R+SE + L  +++      +  + +
Sbjct: 116 VNSLLEQ-----PTGDSPKELRDKAMLELLYATGIRVSELIHLKVEDMNLAVGFITCRDE 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
               R++P     R+A++ Y +      L       LF    G+P++   F + I+    
Sbjct: 171 HK-ERMIPFGKVARQAMVNYMESGRASLLKGQESEWLFTNCSGRPMSRQGFWKIIKYYGE 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    T HTLRHSFA HLL NG D+ ++Q+++GH  ++TTQ+Y N      G+ +  
Sbjct: 230 KAGIQADITPHTLRHSFAAHLLGNGADIHAVQAMMGHSDMATTQMYMNYT---RGEAVRS 286

Query: 313 IYDQTHPS 320
            Y   HP 
Sbjct: 287 AYAGAHPR 294


>gi|182415361|ref|YP_001820427.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177842575|gb|ACB76827.1| integrase family protein [Opitutus terrae PB90-1]
          Length = 324

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 96/319 (30%), Positives = 153/319 (47%), Gaps = 15/319 (4%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
            LP  V  E  +  +N+L +   ER  S  T+++Y      F  +L      +     ++
Sbjct: 19  ALPAEVQAEWWQPFENYLAH---ERRYSAYTVRNYRQAFEDFYRWLVLAGVWERGFDALQ 75

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
                E+R F+ +   ++ G R+L   +SG++SF K+  +R     +  L +   K    
Sbjct: 76  ---MRELRDFVIE-AQRRFGRRTLHNHVSGLRSFFKFWLRRGKVQRNPFLGVPLPKLEKR 131

Query: 125 LPRALNEKQALTLVD--NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           LP+ L E+Q + L+     LL +     +   R+  +L LLYG GLR+SE   L    I 
Sbjct: 132 LPKFLTEEQMVRLLAGPQQLLASESIDAFTAHRDRLVLELLYGAGLRVSELTGLNYGAID 191

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
            +    RI GKG K R+ P+       + ++ D   F        P+    RG  ++P  
Sbjct: 192 LEAGVARIVGKGRKERLCPIGRVAVAVLRKFRDE--FAPATAPDAPVIVTQRGTRMSPRE 249

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            Q  +++      LP+  T H LRHS+ATHLL+ G DLR +Q +LGH +L+TTQ+YT+V+
Sbjct: 250 VQLMLKRYLALAELPMDLTPHKLRHSYATHLLNAGADLRLVQELLGHAQLATTQVYTHVS 309

Query: 303 SKNGGDWMMEIYDQTHPSI 321
                  + EIY + HP  
Sbjct: 310 VAR----LKEIYAKAHPRA 324


>gi|315092744|gb|EFT64720.1| tyrosine recombinase XerD [Propionibacterium acnes HL060PA1]
          Length = 306

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 90/312 (28%), Positives = 146/312 (46%), Gaps = 21/312 (6%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           + +++L++L +ERGLS  T+Q+Y  D  ++  +L         I ++ +++  ++  F  
Sbjct: 8   QVEDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLGSR-----GIGSLAEVTRVDVEEFRR 62

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                 +   S+ R +  +++  ++              M    +S  LP+AL   Q  +
Sbjct: 63  HLDHIGLAPASVTRCVVAVRNLHRFAVGSGQVQADVTAGMSPGTRSRRLPKALTMDQVES 122

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----MDDQSTLRIQG 192
           L+          +     R+ A+L LLYG G R+SE  +L   +I     D    LR+ G
Sbjct: 123 LL-----AAPDTSTVEGLRDVALLELLYGTGARVSEVCALDVDDIRRVLDDPDLGLRLIG 177

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLN--LNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           KGDK RIVPL     KA+  +            N +  L    RG+ L+       IR+ 
Sbjct: 178 KGDKERIVPLGSYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRRA 237

Query: 251 RRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
               GL +   + H+LRHS+ATHLL  G D+R +Q +LGH  ++TTQIYT V      D 
Sbjct: 238 GEAAGLDVEHLSPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVT----ADH 293

Query: 310 MMEIYDQTHPSI 321
           + E+Y  +HP  
Sbjct: 294 LREVYRSSHPRA 305


>gi|317132368|ref|YP_004091682.1| integrase family protein [Ethanoligenens harbinense YUAN-3]
 gi|315470347|gb|ADU26951.1| integrase family protein [Ethanoligenens harbinense YUAN-3]
          Length = 294

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 85/308 (27%), Positives = 140/308 (45%), Gaps = 20/308 (6%)

Query: 19  QNWLQ----NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
            N+L      L  ++ +S  TLQSY+ D +QF+ +L     E         ++  E+  +
Sbjct: 2   DNYLDGYSAYLRDQKSVSASTLQSYQRDLKQFVQYLQQRGNE-----DPADVTAAELEMY 56

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +   R +   + ++ R  + ++ F +YL    I +E+  L +   +    LP  L   + 
Sbjct: 57  LDVLRGKGRSEATISRFTASVRGFFQYLLLEGIISENPALLLHVERGKRCLPDILTSGEV 116

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L             +   R+ A+L LLY  G+R+SE ++L   +I     TL  +G  
Sbjct: 117 DLLF-----AQPVCNDFKGYRDKAMLELLYATGIRVSELIALDVGDINLGLCTLFCRGPE 171

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
              R +P+     ++I  Y D     L  L+ +  LF    G+ L+   F + ++     
Sbjct: 172 KN-RSIPIYNEAVQSISLYLDNARSTLRMLHGEKALFVNAGGRRLSRQGFWKIVKSYAGQ 230

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    T HTLRHSFA HLL NG DL+SIQ +LGH  +S+TQIY  +           +
Sbjct: 231 AGIQKRITPHTLRHSFAAHLLENGADLKSIQEMLGHSDISSTQIYEQIVQNRCRL----V 286

Query: 314 YDQTHPSI 321
           Y++ HP  
Sbjct: 287 YNKCHPKA 294


>gi|254472325|ref|ZP_05085725.1| tyrosine recombinase XerD [Pseudovibrio sp. JE062]
 gi|211958608|gb|EEA93808.1| tyrosine recombinase XerD [Pseudovibrio sp. JE062]
          Length = 295

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 141/305 (46%), Gaps = 17/305 (5%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
            L +ER  +  TL+SY  D   F  FL            +  +  T++RA++S    +  
Sbjct: 1   MLSVERVSAFNTLESYRTDLEDFDSFLTTQG------VDLLAVQVTDVRAYLSDLTDRGF 54

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD---- 139
              S  R LS ++ F ++     I  +     + + +K+ +LP  L+E++   L+     
Sbjct: 55  AASSQARRLSALRQFYQFCYAEDIRDDDPTRTVASPRKAATLPSVLSEEEVDRLIGKAEE 114

Query: 140 -NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              + H S   +   AR   +L +LY  GLR+SE +SL     + D   + ++GKG K R
Sbjct: 115 LANITHDSDAKQIRAARIYTLLEVLYATGLRVSELVSLPVSAAIRDSRLITVKGKGGKER 174

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRRYLGLP 257
            VPL P  + A++EY  L          + LF             F R ++ L     + 
Sbjct: 175 AVPLSPRAQSAMVEYVRLRAAVGAYADSVWLFPSHGESGHFTRQAFGRDLKALALEADID 234

Query: 258 L-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FA+HLL NG DLR +Q +LGH  +STTQIYT+V  +     + ++ + 
Sbjct: 235 RNKVSPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLEER----LQKLVED 290

Query: 317 THPSI 321
            HP  
Sbjct: 291 HHPLA 295


>gi|311745586|ref|ZP_07719371.1| tyrosine recombinase XerD [Algoriphagus sp. PR1]
 gi|126578148|gb|EAZ82368.1| tyrosine recombinase XerD [Algoriphagus sp. PR1]
          Length = 301

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 154/306 (50%), Gaps = 15/306 (4%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             + +   L++ER LS+ ++++Y  D  +    LA Y+ +    +    L    +R F++
Sbjct: 8   HIKQFRHYLKLERSLSENSIEAYTRDVEK----LAAYSSKNFPDKNPLNLELEHLRKFVN 63

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           +    +I D +  R +SGIK+F ++L      TE     +   K    LP  L+ ++ + 
Sbjct: 64  ELAQLEISDYTQARIISGIKAFYRFLMYEDKITEDPAQLLEAPKLGRKLPDTLSYQEIVQ 123

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L++ + L           RN A+L +LY  GLR+SE + L    I +D   LR+ GKG+K
Sbjct: 124 LLEAIPLGEPE-----GHRNRAMLEMLYSSGLRVSELIELKKGQIFEDIGFLRVIGKGNK 178

Query: 197 IRIVPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            R+VP+     K +  Y D       +    +  +F   RGK L+  +    I++     
Sbjct: 179 ERLVPIGKDALKYLNIYKDEVRVHQSIAKGHEEFVFLNRRGKKLSRVMIFLIIKKTAELA 238

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+  + + HT RHSFATHL+  G DLR++Q +LGH  ++TT+IYT+++     D++ ++ 
Sbjct: 239 GIEKNISPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLD----RDYLRQVL 294

Query: 315 DQTHPS 320
              HP 
Sbjct: 295 TDFHPR 300


>gi|149276499|ref|ZP_01882643.1| site-specific recombinase [Pedobacter sp. BAL39]
 gi|149233019|gb|EDM38394.1| site-specific recombinase [Pedobacter sp. BAL39]
          Length = 292

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 80/303 (26%), Positives = 155/303 (51%), Gaps = 15/303 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++   L++ER LS  ++ +Y  D ++   +     +       I++++ ++++ FIS   
Sbjct: 2   SFRNYLKLERALSVNSISAYISDVKKLFEYFDSTGKSY----DIQEVNTSDLKLFISWVN 57

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +   +  R +SGIKS+  +L   ++ +     ++   + +  LP  LN ++   ++ 
Sbjct: 58  ELGMLPVTQARVISGIKSYFSFLSLEQLISSDPASSLETPRLNKKLPDTLNIEEINAMI- 116

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                    +K    R+ A+L +LYGCGLR+SE + +   NI  +   +++ GKGDK RI
Sbjct: 117 ----QAIDHSKAEGLRSRAMLEVLYGCGLRVSELIQMKISNIFINSEFIKVVGKGDKERI 172

Query: 200 VPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +P+  +  K I+ Y +    +  +    +  +F   RG  L   +    I+ L +  G+ 
Sbjct: 173 IPIGSAALKYIMMYINEVRIEVPIKKGQEDFVFLNRRGTALTRMLIFNMIKGLAKDAGIQ 232

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + + HT RHSFATHL+  G DLR++Q +LGH  ++TT+IYT+++     +++ E+    
Sbjct: 233 KNISPHTFRHSFATHLIEGGADLRAVQEMLGHSSITTTEIYTHLD----RNYLKEVVTTF 288

Query: 318 HPS 320
           H  
Sbjct: 289 HNR 291


>gi|70726663|ref|YP_253577.1| hypothetical protein SH1662 [Staphylococcus haemolyticus JCSC1435]
 gi|82582336|sp|Q4L5V4|XERC_STAHJ RecName: Full=Tyrosine recombinase xerC
 gi|68447387|dbj|BAE04971.1| xerC [Staphylococcus haemolyticus JCSC1435]
          Length = 297

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 87/313 (27%), Positives = 154/313 (49%), Gaps = 17/313 (5%)

Query: 15  LKERQ-NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++E Q  +L  L++ER  S  TL+SY  D  QF  FL         +  +R   Y + R 
Sbjct: 1   MEEIQVTFLNMLKVERNFSAHTLKSYHDDLVQFNHFLEQ------ELINLRTFEYKDARN 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++S   +Q +   ++ R +S +++F ++   +  T  +  + + + KK N LP+   E++
Sbjct: 55  YLSYLYSQNLKRTTVSRKISTLRTFYEFWMTQDETIINPFVQLVHPKKENYLPQFFYEEE 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L +     T  +      R+  IL LLY  G+R+SE +++  ++I      +++ GK
Sbjct: 115 MEALFE-----TVAKDTKKGLRDRVILELLYATGIRVSELVNIQLKDIDMSLPGVKVLGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R VP     R++I +Y       +       L   + G P+     +  +  + + 
Sbjct: 170 GNKERFVPFGEFCRQSIEQYL-REFKPIQHTKHSFLLVNMNGAPITERGVRYVLNDVVKR 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                    H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++     + ++
Sbjct: 229 TAGVTEIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQ----LRKV 284

Query: 314 YDQTHPSITQKDK 326
           Y   HP   ++ K
Sbjct: 285 YLNAHPRAKKESK 297


>gi|325285115|ref|YP_004260905.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489]
 gi|324320569|gb|ADY28034.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489]
          Length = 298

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 100/303 (33%), Positives = 158/303 (52%), Gaps = 16/303 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++   L+IERGL + ++ +Y  D  + + FL    ++ IT   I  +S    + FI    
Sbjct: 9   DYQHFLKIERGLMENSITNYVLDVEKLITFL---NKKNITESPIS-ISKETTQQFI-YEI 63

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           +  I  RS  R +SG+KSF  YL       ++ +  +   K    LP  L+ ++   L+D
Sbjct: 64  SASINPRSQARIISGLKSFFNYLIFEDYRADNPMDLIEAPKIGRKLPDTLSVEEINDLID 123

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            + L      +     N A+L  LYGCGLR+SE  +L   ++   +  +R+ GKGDK R 
Sbjct: 124 AIDLSKPEGER-----NRAMLETLYGCGLRVSELTNLRLSDLFFKEDFIRVTGKGDKQRF 178

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           VP+    +K I  Y D     LN+    +  LF   RG+ L   +    I+QL   +GL 
Sbjct: 179 VPISNINKKYINIYKDEIRNHLNIKKGFEDILFLNRRGRQLTRAMIFTIIKQLAETIGLK 238

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + + HTLRHSFATHLL NG DLR+IQ +LGH  ++TT++Y +++ K+    + ++ +  
Sbjct: 239 KTISPHTLRHSFATHLLENGADLRAIQQMLGHESITTTEVYVHIDRKH----LSQVIENY 294

Query: 318 HPS 320
           HP 
Sbjct: 295 HPR 297


>gi|317153262|ref|YP_004121310.1| tyrosine recombinase XerD [Desulfovibrio aespoeensis Aspo-2]
 gi|316943513|gb|ADU62564.1| tyrosine recombinase XerD [Desulfovibrio aespoeensis Aspo-2]
          Length = 307

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 137/305 (44%), Gaps = 16/305 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L+++ IE+GLS+ +L  Y  D    L FL   +        +  L+   +  +++ 
Sbjct: 18  VDGYLEHVLIEKGLSENSLSGYSADLASLLAFLEEKSFR------LEDLTERTLFLYLTY 71

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R + +  RSL R LS ++ F  +   ++   E     + N K    LP  L  ++   +
Sbjct: 72  LRARGLQSRSLARHLSSLRGFFAFALDQRWYKEDPGHLLENPKLPKKLPEFLTREEMSRV 131

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +             +  R+ A+L LLY  GLR+SE + +   +       LR+ GKG K 
Sbjct: 132 L-----ALPETATKLGMRDQAMLELLYAAGLRVSELIEMKVLDYDAQTGLLRVFGKGAKE 186

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VP+    +  +  Y  L            +F    GK L      + I+      G+ 
Sbjct: 187 RLVPIHYVAQDVLSRYL-LNTRPAFRPAVDFMFLNRSGKGLTRQGVWKLIKTYADKAGIK 245

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            S + HT RHSFATHLL  G DLR++Q +LGH  +S T+IYT++        +  I+ Q 
Sbjct: 246 RSISPHTFRHSFATHLLEGGADLRTVQMLLGHSDISATEIYTHI----QAGRLRSIHQQY 301

Query: 318 HPSIT 322
           HP  +
Sbjct: 302 HPRSS 306


>gi|304388409|ref|ZP_07370516.1| tyrosine recombinase XerC [Neisseria meningitidis ATCC 13091]
 gi|304337590|gb|EFM03752.1| tyrosine recombinase XerC [Neisseria meningitidis ATCC 13091]
          Length = 305

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 86/313 (27%), Positives = 147/313 (46%), Gaps = 13/313 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
                  +L+N+  E G S  T+ +Y  D  +    LA    E       + LS  +  A
Sbjct: 6   FAAHFDAYLENIVRE-GKSGHTVAAYRRDLEELFALLAQMPSEDAG-GVPQGLSQRDFTA 63

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            + +   + +  R+L R LS  + +  +L KR +       +++  K+   +P+AL ++ 
Sbjct: 64  ALRRLSQRGLNARTLARKLSSWRQYCAWLVKRGLLHTDPTADIKPPKQPERVPKALPQEW 123

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++D  +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GK
Sbjct: 124 LNRMLDLPV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGK 179

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R VPL+    +A+  Y  L     +      LF G  G  L+    Q+ + Q    
Sbjct: 180 GRKQRQVPLVGKSVEALKNYLPLRQTASDGK---ALFTGRNGTRLSQRQIQKRLAQWAAQ 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G     + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +
Sbjct: 237 NGDGRHVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARL 292

Query: 314 YDQTHPSITQKDK 326
           YD+ HP   ++D+
Sbjct: 293 YDEAHPRAKRQDE 305


>gi|78049232|ref|YP_365407.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037662|emb|CAJ25407.1| integrase-recombinase XerD [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 323

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 92/326 (28%), Positives = 147/326 (45%), Gaps = 24/326 (7%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
              LP + + +     + +L     E+G+++ TL+SY  D      +        + I  
Sbjct: 13  ARQLPPVQAAD-ASVIERFLDRFWAEQGVARQTLESYRRDLEGLARWRDGAHGGLLGI-- 69

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
                   +  ++  R       RS  R LS +++F     +  + ++     +   +  
Sbjct: 70  ----DRAALFDYLRWRTQANYSPRSTARLLSTLRAFYGLCLRDGVRSDDPTTLIDPPQLP 125

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            SLP+AL E Q   L     L           RN A+L L+Y  GLR+SE ++L    + 
Sbjct: 126 RSLPKALTESQIEAL-----LAAPDVDTPAGLRNRAMLELMYAAGLRVSELVNLPAVGVN 180

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-------QLPLFRGIRG 235
             Q  LR+ GKG K R+VPL    +  +  Y       L  N        Q+PLF     
Sbjct: 181 LRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARPLLAANKPVAAVDGQVPLFIDAAR 240

Query: 236 KPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           +PL+   F   +++     G+ P + + H LRHSFATHLL++G DLR++Q +LGH  LST
Sbjct: 241 RPLSRQQFWALVKRYAAVAGIDPDTVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLST 300

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPS 320
           TQIYT V  ++    + +++   HP 
Sbjct: 301 TQIYTLVARQH----LQKLHASHHPR 322


>gi|254670992|emb|CBA07733.1| site-specific recombinase [Neisseria meningitidis alpha153]
          Length = 305

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 86/313 (27%), Positives = 147/313 (46%), Gaps = 13/313 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
                  +L+N+  E G S+ T+ +Y  D  +    LA    E       + LS  +  A
Sbjct: 6   FAAHFDAYLENIVRE-GKSEHTVAAYRRDLEELFALLAQMPSEAEG-GVPQGLSQRDFTA 63

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            + +   + +  R+L R LS  + +  +L KR +       +++  K+   +P+AL ++ 
Sbjct: 64  ALRRLSQRGLNARTLARKLSSWRQYCAWLVKRGLMRADPTADIKPPKQPERVPKALPQEW 123

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++D  +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GK
Sbjct: 124 LNRMLDLPV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGK 179

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R VPL     +A+  Y  L     +      LF G  G  L+    Q+ + Q    
Sbjct: 180 GRKQRQVPLTGKSVEALKNYLPLRQTASDGK---ALFTGRNGTRLSQRQIQKRLAQWAAQ 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G     + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +
Sbjct: 237 NGDGRHVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARL 292

Query: 314 YDQTHPSITQKDK 326
           YD+ HP   ++D+
Sbjct: 293 YDEAHPRAKRQDE 305


>gi|254417725|ref|ZP_05031449.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
 gi|196183902|gb|EDX78878.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
          Length = 309

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 129/304 (42%), Positives = 175/304 (57%), Gaps = 10/304 (3%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            WL++L  ER LS  TL++Y    R ++ FL  +  E ++++ +  ++  E+RA +++RR
Sbjct: 14  AWLEHLAHERRLSPRTLEAYGHIGRLYVAFLERHRGEALSLKGLGTVTAAEVRAHMAERR 73

Query: 80  --TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +  RSL +SLS I+ F  +L +R  T    +  +R  +   SLPR + E QA  L
Sbjct: 74  SGDHPLAARSLSQSLSAIRGFHAFLDRRLDTPAPQLALVRGPRIKPSLPRPVTEDQARGL 133

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +            W  AR+ A+L LLYGCGLRISE LSLT  +    + TLR+ GKG K 
Sbjct: 134 LAEP-NADPDAEPWEAARDRAVLTLLYGCGLRISEGLSLTRADAPLGE-TLRVLGKGSKT 191

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RIVP+LP+VR A+  Y  L PF L       LFR  RG PL+P   Q  +++LR  LGLP
Sbjct: 192 RIVPVLPAVRAAVDAYLALQPFPL--QPSDALFRARRGGPLSPRHVQASVQRLRGRLGLP 249

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
             TT H LRHSFATHLL  G DLRSIQ +LGH  LSTTQ YT V+++     ++  Y   
Sbjct: 250 ERTTPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQKYTGVDAER----LLNAYAAA 305

Query: 318 HPSI 321
           HP  
Sbjct: 306 HPRA 309


>gi|189485678|ref|YP_001956619.1| tyrosine recombinase XerC [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287637|dbj|BAG14158.1| tyrosine recombinase XerC [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 314

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 99/309 (32%), Positives = 155/309 (50%), Gaps = 21/309 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           ++  ++ + L  ER  S  TL++Y+ D   F +FL                   +IR F+
Sbjct: 25  EKIDSFEKYLNAERNFSAHTLRAYKRDISDFALFLQKKR------LNFSHAGKRDIREFL 78

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQA 134
            +   +K+   +L R L+ + SF K+L   KI  E+ I +M  +LKK   +P  L E + 
Sbjct: 79  EELGNKKLSRATLARKLAVLHSFYKFLIINKIIKENFIESMPASLKKDKKVPSFLTENEM 138

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L++   L           R+ A++ L Y CGLRI E +SL  +NI    + + + GK 
Sbjct: 139 QMLLNLPDLK---------PRDRAMIELFYSCGLRIEELVSLDLKNIDFISNVVTVTGKR 189

Query: 195 DKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K RIVP+      AI +Y +      L  +I+ P+F   R K L     +R + +    
Sbjct: 190 NKERIVPVGDICLHAIKDYINKRRNLGLPYDIRSPVFLSDRAKRLGQRTARRILHRYFVK 249

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G     + HTLRH+FATH+L  G DLRS+Q +LGH  LS+TQIYT+V  ++    + ++
Sbjct: 250 AGFTKKVSPHTLRHTFATHILDRGCDLRSVQEMLGHKNLSSTQIYTHVTIES----LKKV 305

Query: 314 YDQTHPSIT 322
           Y +THP   
Sbjct: 306 YKETHPRAK 314


>gi|289550957|ref|YP_003471861.1| Site-specific tyrosine recombinase [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658459|ref|ZP_07911331.1| tyrosine recombinase XerC [Staphylococcus lugdunensis M23590]
 gi|289180489|gb|ADC87734.1| Site-specific tyrosine recombinase [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496788|gb|EFU85111.1| tyrosine recombinase XerC [Staphylococcus lugdunensis M23590]
          Length = 297

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 148/307 (48%), Gaps = 16/307 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +L  L++ER  S  T++SY  D  QF  FLA        + T+    Y + R ++S 
Sbjct: 5   QKAFLYMLKVERNFSDHTIKSYHDDLMQFNEFLAQ------EMLTLSTFEYKDARNYLSY 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + +   ++ R +S ++SF +Y   +  T  +  + + + KK   LP+   E +   L
Sbjct: 59  LYNKNLKRTTVSRKISTLRSFYEYWMTQDETVINPFVQLVHPKKEQYLPQFFYEAEMDAL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            + VL            R+  IL LLY  G+R+SE + +   +I      +++ GKG K 
Sbjct: 119 FETVLHDAKK-----GLRDRVILELLYSTGMRVSELVHIKKMDIDLTLPGVKVLGKGSKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R +P     +++I +Y  L    +  N    L   + G+P+     +  +  + +     
Sbjct: 174 RFLPFGEFCKQSIEQYL-LEFGPVKQNDHPFLLVNMNGQPITERGVRYVLNDIVKRTAGV 232

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+     D + ++Y   
Sbjct: 233 TDIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVS----KDQLRKVYLNA 288

Query: 318 HPSITQK 324
           HP   ++
Sbjct: 289 HPRAKKE 295


>gi|90420213|ref|ZP_01228121.1| tyrosine recombinase XerD [Aurantimonas manganoxydans SI85-9A1]
 gi|90335547|gb|EAS49297.1| tyrosine recombinase XerD [Aurantimonas manganoxydans SI85-9A1]
          Length = 328

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 81/315 (25%), Positives = 147/315 (46%), Gaps = 17/315 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            + + +L+ + +ERG +  T+ +Y  D      F+A      +T       +  +IRA++
Sbjct: 21  ADIETFLEMMAVERGAADNTVAAYRRDLEDAAGFMAGQGGSLMTA------TTEDIRAYV 74

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            +   +   + S  R LS ++ + ++L       +     +   ++   LP+ ++E +  
Sbjct: 75  GRLAARGFAETSRSRRLSALRQYYRFLYVEGRRGDDPTGPIEGARRKRPLPKVMSEDEVD 134

Query: 136 TLVDNVLLHTSHETKWIDA-----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            L+D          +         R  A++ LLY  G+R+SE +SL    +   Q  + +
Sbjct: 135 RLLDRAAAEAVDPERSPAGLVRAARMHALVELLYATGMRVSELVSLPRAVLRGRQRMIVV 194

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQ 249
           +GKGDK R+VP+  + R A++ + +             LF  +     L    F R ++ 
Sbjct: 195 RGKGDKERMVPIGEAARDALIRFAEAMKLAGVSEEGRWLFPAVSETGHLTRQAFARDLKA 254

Query: 250 LRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           L    G+P    + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V  +    
Sbjct: 255 LAAREGIPAERISPHVLRHAFASHLLQNGADLRAVQELLGHADISTTQIYTHVLEER--- 311

Query: 309 WMMEIYDQTHPSITQ 323
            ++ +    HP   +
Sbjct: 312 -LIRLVTDHHPLSDE 325


>gi|53717850|ref|YP_106836.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           K96243]
 gi|76808989|ref|YP_331806.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           1710b]
 gi|126451479|ref|YP_001064490.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           1106a]
 gi|134283593|ref|ZP_01770292.1| tyrosine recombinase XerC [Burkholderia pseudomallei 305]
 gi|167736614|ref|ZP_02409388.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           14]
 gi|167813712|ref|ZP_02445392.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           91]
 gi|167822227|ref|ZP_02453698.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           9]
 gi|167843822|ref|ZP_02469330.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           B7210]
 gi|167909037|ref|ZP_02496128.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           112]
 gi|226199796|ref|ZP_03795347.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pakistan 9]
 gi|242316661|ref|ZP_04815677.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1106b]
 gi|254182208|ref|ZP_04888805.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1655]
 gi|254188137|ref|ZP_04894649.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pasteur 52237]
 gi|254196193|ref|ZP_04902617.1| tyrosine recombinase XerC [Burkholderia pseudomallei S13]
 gi|254261174|ref|ZP_04952228.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1710a]
 gi|254295751|ref|ZP_04963208.1| tyrosine recombinase XerC [Burkholderia pseudomallei 406e]
 gi|52208264|emb|CAH34195.1| integrase/recombinase [Burkholderia pseudomallei K96243]
 gi|76578442|gb|ABA47917.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1710b]
 gi|126225121|gb|ABN88661.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1106a]
 gi|134245002|gb|EBA45097.1| tyrosine recombinase XerC [Burkholderia pseudomallei 305]
 gi|157806287|gb|EDO83457.1| tyrosine recombinase XerC [Burkholderia pseudomallei 406e]
 gi|157935817|gb|EDO91487.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pasteur 52237]
 gi|169652936|gb|EDS85629.1| tyrosine recombinase XerC [Burkholderia pseudomallei S13]
 gi|184212746|gb|EDU09789.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1655]
 gi|225928147|gb|EEH24183.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pakistan 9]
 gi|242139900|gb|EES26302.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1106b]
 gi|254219863|gb|EET09247.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1710a]
          Length = 310

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 83/328 (25%), Positives = 164/328 (50%), Gaps = 29/328 (8%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + +  +     ++L NL   R LS  TL++Y  +  +         ++    + +  L+ 
Sbjct: 1   MTAKPIADPIVDYLSNLRHVRKLSDHTLRAYAHELDEL--------KKLANGRPLDSLTA 52

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++R+ +++     +  RS+   LS  ++F ++  +      + +  +R  K++ +LP+A
Sbjct: 53  VDMRSAVARAHAGGLSARSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKA 112

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI------- 181
           L+      L+D     T+   +     + AIL L Y  GLR++E + L  + +       
Sbjct: 113 LSVDDTAALMDAPTAGTAESLR-----DHAILELFYSSGLRLAELIGLDIEYVKDGAYRS 167

Query: 182 ----MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                  ++ + ++GKGDK R VP+      A+  +  +    +  + + PLF  +RG  
Sbjct: 168 AGWLDLAEAEVTVRGKGDKERKVPVGRKALDALHAWLAVRGEFVKHDPR-PLFLSVRGNR 226

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           ++PGV +  +++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  +S TQ+
Sbjct: 227 MSPGVVRERVKRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQV 286

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           YT+++ ++    + +IYD  HP   ++D
Sbjct: 287 YTSLDFQH----LAKIYDSAHPRAKKRD 310


>gi|255325242|ref|ZP_05366348.1| tyrosine recombinase XerC [Corynebacterium tuberculostearicum
           SK141]
 gi|255297807|gb|EET77118.1| tyrosine recombinase XerC [Corynebacterium tuberculostearicum
           SK141]
          Length = 305

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 80/309 (25%), Positives = 142/309 (45%), Gaps = 19/309 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ++ +  +++       +G ++ T++ Y  D R              ++ T  +     +R
Sbjct: 16  QMAEAIEDFADFQLHVKGRAEATVRGYRSDLRDLAR----------SVPTFAEFDLNSLR 65

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            ++++   +     +L R  +  K F  +  +           +   K    LP  L  +
Sbjct: 66  QWLAEAVAEGKSRSTLARRTAAAKGFSTWAVREGHLKRDVAARLVTPKVGRHLPTVLAPE 125

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           QA  L+ N +       +    R+SAIL LLY  G+R++E + L   +I   + TL + G
Sbjct: 126 QAGELMGNAVSA----DEVHFLRDSAILELLYASGMRVAELVRLDLGDIDFQRGTLHVTG 181

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG+K R+VP   +   A+ ++ D    ++       +F G RG  ++    +R + +  +
Sbjct: 182 KGNKQRVVPFGHAAEDALKQWIDKGRGEIAAAGTEAVFVGSRGGRIDQRQVRRIVEKAAK 241

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G     T H +RHS ATHLL  G DLR +Q +LGH  L+TTQIYT+V+++     +  
Sbjct: 242 VTG-TQGLTPHGVRHSAATHLLEGGADLRVVQELLGHSSLNTTQIYTHVSAQR----LQR 296

Query: 313 IYDQTHPSI 321
           +YDQ HP  
Sbjct: 297 VYDQAHPRA 305


>gi|257791164|ref|YP_003181770.1| integrase family protein [Eggerthella lenta DSM 2243]
 gi|317488103|ref|ZP_07946680.1| phage integrase [Eggerthella sp. 1_3_56FAA]
 gi|325832921|ref|ZP_08165594.1| phage integrase, N-terminal SAM domain protein [Eggerthella sp.
           HGA1]
 gi|257475061|gb|ACV55381.1| integrase family protein [Eggerthella lenta DSM 2243]
 gi|316912811|gb|EFV34343.1| phage integrase [Eggerthella sp. 1_3_56FAA]
 gi|325485786|gb|EGC88250.1| phage integrase, N-terminal SAM domain protein [Eggerthella sp.
           HGA1]
          Length = 323

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 87/315 (27%), Positives = 142/315 (45%), Gaps = 15/315 (4%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
              +++    +   + +ER  S  TL++Y  D   F  +             I   ++ +
Sbjct: 18  DPRIVELIDAFCHAMRVERNASVHTLRAYRIDLMDFARWACRERI------DILAATHRQ 71

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +R ++ +    +    ++ R LS ++SF ++L    I  E     ++  K+  SLP  + 
Sbjct: 72  LRRYLGELDRAQYSRTTVNRRLSALRSFFRWLNVTGIADEDPASILQGPKQPKSLPHVIR 131

Query: 131 EKQALTLV----DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
               + L+             E   +DARN A+L  LY CG R+SEA  L   N+     
Sbjct: 132 ASDMVKLLTVYGKRDAAGREREQSSVDARNLALLEFLYACGARVSEASGLLAANVDFGSG 191

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            +++ GKG K RIVPL      ++  Y     P  L        F   RG  +     ++
Sbjct: 192 QVKVFGKGSKERIVPLHDMAVSSMRAYATWARPLILRDRTCDYFFVSTRGNRMGTDAIRK 251

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             +   R  GL  S + H +RH+FAT LL  G DLRS+Q +LGH  LSTTQIYT+++   
Sbjct: 252 MFKDALRQAGLDESLSPHDMRHTFATDLLDGGADLRSVQEMLGHASLSTTQIYTHLSP-- 309

Query: 306 GGDWMMEIYDQTHPS 320
               + +++ +THP 
Sbjct: 310 --GRLKQVHARTHPR 322


>gi|78067906|ref|YP_370675.1| site-specific tyrosine recombinase XerC [Burkholderia sp. 383]
 gi|77968651|gb|ABB10031.1| Tyrosine recombinase XerC [Burkholderia sp. 383]
          Length = 306

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 86/321 (26%), Positives = 164/321 (51%), Gaps = 29/321 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                +L NL+  R LS+ TL+ Y  +  +         ++    + +  L+  ++R  +
Sbjct: 4   DPIAAYLSNLKHVRQLSEHTLRGYTHELDEL--------KKLANGRPLEALTAADMRGAV 55

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++  +  +  RS+   LS  ++F ++L +R     + +  +R  K++ +LP+AL+   A 
Sbjct: 56  ARAHSGGLSARSISHRLSAWRAFYRWLAQRIEMPANPVAAVRAPKRAKTLPKALSVDDAS 115

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP-----------QNIMDD 184
            L++  L +T+        R+ AIL L Y  GLR++E + L               +   
Sbjct: 116 ALMNAPLANTTE-----GIRDHAILELFYSSGLRLAELIGLDVMYTQADGYRSAGWLDLA 170

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           ++ + ++GKG+K R VP+      A+  +  +    +  +   PLF  +RG  ++PGV +
Sbjct: 171 EAEVTVRGKGNKERKVPVGRKAIDALNAWLAVRGEFVKHDPH-PLFVSVRGNRMSPGVVR 229

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  +S TQ+YT+++ +
Sbjct: 230 ERVKRAALTAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYTSLDFQ 289

Query: 305 NGGDWMMEIYDQTHPSITQKD 325
           +    + +IYD  HP   ++D
Sbjct: 290 H----LAKIYDSAHPRAKKRD 306


>gi|261393207|emb|CAX50826.1| tyrosine recombinase XerC [Neisseria meningitidis 8013]
          Length = 305

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 85/313 (27%), Positives = 148/313 (47%), Gaps = 13/313 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
                  +L+N+  E G S+ T+ +Y  D  +    LA    E       + LS  +  A
Sbjct: 6   FAAHFDAYLENIVRE-GKSEHTVAAYRRDLEELFALLAQMPSEAEG-GVPQGLSQRDFTA 63

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            + +   + +  R+L R LS  + +  +L +R +       +++  K+   +P+AL ++ 
Sbjct: 64  ALRRLSQRGLNARTLARKLSSWRQYCVWLVERGLMRADPTADIKPPKQPERVPKALPQEW 123

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++D  +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GK
Sbjct: 124 LNRMLDLPV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGK 179

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R VPL+    +A+  Y  L     +      LF G  G  L+    Q+ + Q    
Sbjct: 180 GRKQRQVPLVGKSVEALKNYLPLRQTASDGK---ALFTGRNGTRLSQRQIQKRLAQWAAQ 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G     + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +
Sbjct: 237 NGDGRHVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARL 292

Query: 314 YDQTHPSITQKDK 326
           YD+ HP   ++D+
Sbjct: 293 YDEAHPRAKRQDE 305


>gi|296394365|ref|YP_003659249.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296181512|gb|ADG98418.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 304

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 89/311 (28%), Positives = 146/311 (46%), Gaps = 12/311 (3%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT--IRQLSYTEI 71
           + +    + ++L  ERG S  T+++Y  D R +        ++  T     +  ++  ++
Sbjct: 1   MAEALAQYERHLRFERGRSPNTVRAYLGDLRAYFGPAVDGNDQDDTAAHEVLGAVTIADL 60

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           R ++S+   +     +L R  SG+K+F ++  +  +        +   K   +LP  L +
Sbjct: 61  RGWLSEMTAEGASRATLARRASGMKTFFEWAMRNGLAEHDPTARLSTPKLRRTLPHVLRQ 120

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            QA   +             +  R+  IL LLYG G+R+ E   L   +I  D+    + 
Sbjct: 121 DQAEQALGP---APHQREGPLALRDQLILELLYGTGMRVGELCGLDLDDIDQDRRLATVL 177

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR-Q 249
           GKGDK R VP       A+  +     P  +       L  G RGK L+P   +R ++ +
Sbjct: 178 GKGDKQRAVPFGAKAADALAAWLRDGRPALVGPRSGAALLLGARGKRLDPRTARRVVQER 237

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           +    GLP S   H LRHS ATHLL  G DLR +Q ILGH  L+TTQIYT+V+ +     
Sbjct: 238 VAEEAGLP-SLGPHGLRHSAATHLLEGGADLRVVQEILGHSSLATTQIYTHVSVER---- 292

Query: 310 MMEIYDQTHPS 320
           + ++++Q HP 
Sbjct: 293 LRKVHEQAHPR 303


>gi|91216360|ref|ZP_01253327.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755]
 gi|91185498|gb|EAS71874.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755]
          Length = 298

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 92/308 (29%), Positives = 157/308 (50%), Gaps = 16/308 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  Q++   L+IERGL+  T+Q+Y  D  +   +++ Y        T   +    +++FI
Sbjct: 5   EAIQDFTYYLKIERGLADNTVQNYRLDILKLANYISEYN----ATLTPELVDEETLQSFI 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
               ++ I +RS  R +SG+KSF  YL        + +  + + +    LP  L+  +  
Sbjct: 61  -YSISKVINERSQARLISGLKSFFDYLIFEDYRKTNPLELIESPRLGRRLPDTLSTDEID 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            LV+ + L     +     RN AI+  LYGCGLR+SE + L   ++  ++  +++ GKG+
Sbjct: 120 QLVEAIDL-----SHLQGHRNKAIIETLYGCGLRVSELVELKISDLFFEKGFIKVIGKGN 174

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R+VP+    +K I  Y +     LN   +    LF   RG  L   +    ++QL + 
Sbjct: 175 KERLVPINTYTQKFISIYKEEFRIHLNQQSEFKDILFLNRRGAQLTRAMIFTIVKQLAKK 234

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           + L  + + HT RHSFATHLL NG +LR IQ +LGH  ++TT+IY +++  +    +  +
Sbjct: 235 INLQKNISPHTFRHSFATHLLENGANLRVIQQMLGHESITTTEIYMHLDKTH----LKSV 290

Query: 314 YDQTHPSI 321
            +  HP  
Sbjct: 291 LENYHPRA 298


>gi|257898819|ref|ZP_05678472.1| phage integrase [Enterococcus faecium Com15]
 gi|257836731|gb|EEV61805.1| phage integrase [Enterococcus faecium Com15]
          Length = 301

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 99/308 (32%), Positives = 153/308 (49%), Gaps = 19/308 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L+ L +ERG S+ T ++YE D   F  FL     E+     + +  Y  +R ++S  
Sbjct: 8   QKFLRYLIVERGYSEKTKEAYEEDILHFKHFL-----EESGDADLLKAEYFTVRVYLSAL 62

Query: 79  RTQK--IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              +      S+ R ++ ++SF +YL K ++  E+    +   KK+  LPR   E +   
Sbjct: 63  ADHRPSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYEDEMQA 122

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L D+V          +D RN A+L +LYG G+R+SE  +L   +I  D   + I GKG+K
Sbjct: 123 LFDSV-----AGDSPLDLRNRALLEVLYGSGIRLSECSNLLVSDIDFDSEVMLIHGKGNK 177

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            R  PL    + A+ EY+      L          +F    GKP+ P   +  + Q+ + 
Sbjct: 178 ERYAPLGSFAQDALQEYFTEGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQMIKK 237

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRH+FATHLL+NG DLR++Q +LGH  LSTTQIY +V  ++    + + 
Sbjct: 238 SSLDSDIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKES----LQKN 293

Query: 314 YDQTHPSI 321
           Y   HP  
Sbjct: 294 YRSFHPRA 301


>gi|50842870|ref|YP_056097.1| site-specific tyrosine recombinase XerD [Propionibacterium acnes
           KPA171202]
 gi|289425573|ref|ZP_06427350.1| tyrosine recombinase XerD [Propionibacterium acnes SK187]
 gi|289428211|ref|ZP_06429907.1| tyrosine recombinase XerD [Propionibacterium acnes J165]
 gi|295130925|ref|YP_003581588.1| tyrosine recombinase XerD [Propionibacterium acnes SK137]
 gi|50840472|gb|AAT83139.1| site-specific recombinase [Propionibacterium acnes KPA171202]
 gi|289154551|gb|EFD03239.1| tyrosine recombinase XerD [Propionibacterium acnes SK187]
 gi|289158592|gb|EFD06799.1| tyrosine recombinase XerD [Propionibacterium acnes J165]
 gi|291376433|gb|ADE00288.1| tyrosine recombinase XerD [Propionibacterium acnes SK137]
 gi|313764051|gb|EFS35415.1| tyrosine recombinase XerD [Propionibacterium acnes HL013PA1]
 gi|313792446|gb|EFS40539.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA1]
 gi|313801509|gb|EFS42758.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA2]
 gi|313807151|gb|EFS45646.1| tyrosine recombinase XerD [Propionibacterium acnes HL087PA2]
 gi|313809643|gb|EFS47379.1| tyrosine recombinase XerD [Propionibacterium acnes HL083PA1]
 gi|313813282|gb|EFS50996.1| tyrosine recombinase XerD [Propionibacterium acnes HL025PA1]
 gi|313816401|gb|EFS54115.1| tyrosine recombinase XerD [Propionibacterium acnes HL059PA1]
 gi|313819347|gb|EFS57061.1| tyrosine recombinase XerD [Propionibacterium acnes HL046PA2]
 gi|313819996|gb|EFS57710.1| tyrosine recombinase XerD [Propionibacterium acnes HL036PA1]
 gi|313823212|gb|EFS60926.1| tyrosine recombinase XerD [Propionibacterium acnes HL036PA2]
 gi|313825000|gb|EFS62714.1| tyrosine recombinase XerD [Propionibacterium acnes HL063PA1]
 gi|313827302|gb|EFS65016.1| tyrosine recombinase XerD [Propionibacterium acnes HL063PA2]
 gi|313829963|gb|EFS67677.1| tyrosine recombinase XerD [Propionibacterium acnes HL007PA1]
 gi|313833033|gb|EFS70747.1| tyrosine recombinase XerD [Propionibacterium acnes HL056PA1]
 gi|313838270|gb|EFS75984.1| tyrosine recombinase XerD [Propionibacterium acnes HL086PA1]
 gi|314914912|gb|EFS78743.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA4]
 gi|314917863|gb|EFS81694.1| tyrosine recombinase XerD [Propionibacterium acnes HL050PA1]
 gi|314919752|gb|EFS83583.1| tyrosine recombinase XerD [Propionibacterium acnes HL050PA3]
 gi|314924835|gb|EFS88666.1| tyrosine recombinase XerD [Propionibacterium acnes HL036PA3]
 gi|314930006|gb|EFS93837.1| tyrosine recombinase XerD [Propionibacterium acnes HL067PA1]
 gi|314956418|gb|EFT00730.1| tyrosine recombinase XerD [Propionibacterium acnes HL027PA1]
 gi|314957287|gb|EFT01390.1| tyrosine recombinase XerD [Propionibacterium acnes HL002PA1]
 gi|314960608|gb|EFT04710.1| tyrosine recombinase XerD [Propionibacterium acnes HL002PA2]
 gi|314963140|gb|EFT07240.1| tyrosine recombinase XerD [Propionibacterium acnes HL082PA1]
 gi|314967736|gb|EFT11835.1| tyrosine recombinase XerD [Propionibacterium acnes HL037PA1]
 gi|314972871|gb|EFT16968.1| tyrosine recombinase XerD [Propionibacterium acnes HL053PA1]
 gi|314975706|gb|EFT19801.1| tyrosine recombinase XerD [Propionibacterium acnes HL045PA1]
 gi|314978092|gb|EFT22186.1| tyrosine recombinase XerD [Propionibacterium acnes HL072PA2]
 gi|314984110|gb|EFT28202.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA1]
 gi|314986253|gb|EFT30345.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA2]
 gi|314989533|gb|EFT33624.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA3]
 gi|315078203|gb|EFT50246.1| tyrosine recombinase XerD [Propionibacterium acnes HL053PA2]
 gi|315080906|gb|EFT52882.1| tyrosine recombinase XerD [Propionibacterium acnes HL078PA1]
 gi|315086002|gb|EFT57978.1| tyrosine recombinase XerD [Propionibacterium acnes HL002PA3]
 gi|315088279|gb|EFT60255.1| tyrosine recombinase XerD [Propionibacterium acnes HL072PA1]
 gi|315095700|gb|EFT67676.1| tyrosine recombinase XerD [Propionibacterium acnes HL038PA1]
 gi|315098208|gb|EFT70184.1| tyrosine recombinase XerD [Propionibacterium acnes HL059PA2]
 gi|315101638|gb|EFT73614.1| tyrosine recombinase XerD [Propionibacterium acnes HL046PA1]
 gi|315105953|gb|EFT77929.1| tyrosine recombinase XerD [Propionibacterium acnes HL030PA1]
 gi|315109457|gb|EFT81433.1| tyrosine recombinase XerD [Propionibacterium acnes HL030PA2]
 gi|327327897|gb|EGE69671.1| tyrosine recombinase XerD [Propionibacterium acnes HL096PA3]
 gi|327330004|gb|EGE71758.1| tyrosine recombinase XerD [Propionibacterium acnes HL097PA1]
 gi|327330036|gb|EGE71789.1| tyrosine recombinase XerD [Propionibacterium acnes HL096PA2]
 gi|327442733|gb|EGE89387.1| tyrosine recombinase XerD [Propionibacterium acnes HL043PA1]
 gi|327443869|gb|EGE90523.1| tyrosine recombinase XerD [Propionibacterium acnes HL043PA2]
 gi|327443937|gb|EGE90591.1| tyrosine recombinase XerD [Propionibacterium acnes HL013PA2]
 gi|327452342|gb|EGE98996.1| tyrosine recombinase XerD [Propionibacterium acnes HL087PA3]
 gi|327452783|gb|EGE99437.1| tyrosine recombinase XerD [Propionibacterium acnes HL083PA2]
 gi|327453535|gb|EGF00190.1| tyrosine recombinase XerD [Propionibacterium acnes HL092PA1]
 gi|328752650|gb|EGF66266.1| tyrosine recombinase XerD [Propionibacterium acnes HL025PA2]
 gi|328753798|gb|EGF67414.1| tyrosine recombinase XerD [Propionibacterium acnes HL087PA1]
 gi|328755026|gb|EGF68642.1| tyrosine recombinase XerD [Propionibacterium acnes HL020PA1]
 gi|328761444|gb|EGF74970.1| tyrosine recombinase XerD [Propionibacterium acnes HL099PA1]
          Length = 306

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 91/312 (29%), Positives = 148/312 (47%), Gaps = 21/312 (6%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           + +++L++L +ERGLS  T+Q+Y  D  ++  +L         I ++ +++  ++  F  
Sbjct: 8   QAEDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLGSR-----GIGSLAEVTRVDVEEFRR 62

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                 +   S+ R +  +++  ++              M    +S  LP+AL+  Q  +
Sbjct: 63  HLDHIGLAPASVTRCVVAVRNLHRFAVGSGQLQADVTAGMSPGTRSRRLPKALSMDQVES 122

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----MDDQSTLRIQG 192
           L     L     +     R++A+L LLYG G R+SE  +L   +I     D    LR+ G
Sbjct: 123 L-----LAAPDTSTVEGLRDAALLELLYGTGARVSEVCALDVDDIRPVLDDPDLGLRLIG 177

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLN--LNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           KGDK RIVPL     KA+  +            N +  L    RG+ L+       IR+ 
Sbjct: 178 KGDKERIVPLGSYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRRA 237

Query: 251 RRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
               GL +   + H+LRHS+ATHLL  G D+R +Q +LGH  ++TTQIYT V      D 
Sbjct: 238 GEAAGLDVEHLSPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVT----ADH 293

Query: 310 MMEIYDQTHPSI 321
           + E+Y  +HP  
Sbjct: 294 LREVYRSSHPRA 305


>gi|167561111|ref|ZP_02354027.1| site-specific tyrosine recombinase XerC [Burkholderia oklahomensis
           EO147]
          Length = 306

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 84/321 (26%), Positives = 156/321 (48%), Gaps = 29/321 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
               ++L NL   R LS  TL++Y  +  +         ++    + +  L+  ++R  +
Sbjct: 4   DPIADYLSNLRHVRKLSDHTLRAYAHELDEL--------KKLANGRPLESLTAVDVRGAV 55

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++     +  RS+   LS  ++F ++  +      + +  +R  K++  LP+AL+   A 
Sbjct: 56  ARAHAGGLSARSISHRLSAWRAFYRWFAQHVEMNANPVATIRAPKRAKMLPKALSVDDAA 115

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP-----------QNIMDD 184
            L+D               R+ AIL L Y  GLR++E + L               +   
Sbjct: 116 ALMD-----APASGTAESLRDHAILELFYSSGLRLAELIGLDVAYVKIGEYRSEGWLDLA 170

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           ++ + ++GKGDK R VP+      A+  +  +    +  +   PLF  +RG  ++PGV +
Sbjct: 171 EAEVTVRGKGDKERKVPVGRKAIDALNAWLAVRGEFVRHDPH-PLFLSVRGNRMSPGVVR 229

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  +S TQ+YT+++ +
Sbjct: 230 GRVKRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQ 289

Query: 305 NGGDWMMEIYDQTHPSITQKD 325
           +    + +IYD  HP   ++D
Sbjct: 290 H----LAKIYDSAHPRAKKRD 306


>gi|261867252|ref|YP_003255174.1| site-specific tyrosine recombinase XerC [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|293391244|ref|ZP_06635578.1| tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|261412584|gb|ACX81955.1| tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|290951778|gb|EFE01897.1| tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 296

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 89/313 (28%), Positives = 148/313 (47%), Gaps = 18/313 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +    Q++   L +ER +S  TL +Y+    +    L     +   I   +Q++ + +R 
Sbjct: 1   MQNALQHYFTYLRVERQVSPHTLSNYQRQLARVTAIL-----QGAGITQWQQVTASVVRY 55

Query: 74  FISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            +++   Q  + ++SL   LS ++ FL YL ++     +    +   K++  LP+ ++  
Sbjct: 56  VVAQSSKQDGLKEKSLALRLSALRRFLTYLVQQGELKVNPATGISAPKQAKHLPKNIDTD 115

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q   L+       +   + ID R+ AI+ LLY  GLR+SE   L   +I      +R+ G
Sbjct: 116 QVQLLL------ANDSKEPIDIRDRAIIELLYSSGLRLSELQGLNLNSIHLRSREVRVIG 169

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG+K R+VP       AI ++  +    L       LF    G  ++    Q  +     
Sbjct: 170 KGNKERVVPFGRYASHAIQQWLKVR--LLFNPKDNALFVSQLGNRMSHRAIQMRLETWGI 227

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    +  
Sbjct: 228 RQGLNSHLNPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAA 283

Query: 313 IYDQTHPSITQKD 325
           +YD  HP   +K 
Sbjct: 284 VYDAAHPRAKRKK 296


>gi|237749023|ref|ZP_04579503.1| tyrosine recombinase XerD [Oxalobacter formigenes OXCC13]
 gi|229380385|gb|EEO30476.1| tyrosine recombinase XerD [Oxalobacter formigenes OXCC13]
          Length = 312

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 143/304 (47%), Gaps = 15/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +   + +E GLSK TL +Y  D   F  +L     +      + ++    +  +   
Sbjct: 17  VDEFCDTVWLEDGLSKNTLDAYRRDLLLFARWLEKNCPD----IDLLKVDQNHLNDYFWA 72

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  +     S  R L+ +K F +   +    +E+  L ++  K++   P+ L+E Q   L
Sbjct: 73  RHAES-KATSANRRLTVLKRFYRLQLRLGRISENPCLKLKAAKQAARFPKTLSETQVEAL 131

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L    + K +  R+ A++ L+Y  GLR+SE + L    +  ++  LRI GKG+K 
Sbjct: 132 -----LGAPDQEKSLGLRDRAMIELMYASGLRVSELVDLKLVEVGMNEGVLRIIGKGEKT 186

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP     R  +  Y        L   +   LF   RG  +   +F   I++     G+
Sbjct: 187 RLVPFGEEARVWLERYMQDARSLILAGKMSDYLFVTARGTAMTRQMFWTLIKKYALKSGI 246

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     + +++  
Sbjct: 247 HEPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVAQQR----LKQLHAM 302

Query: 317 THPS 320
            HP 
Sbjct: 303 HHPR 306


>gi|296129776|ref|YP_003637026.1| tyrosine recombinase XerD [Cellulomonas flavigena DSM 20109]
 gi|296021591|gb|ADG74827.1| tyrosine recombinase XerD [Cellulomonas flavigena DSM 20109]
          Length = 310

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 88/323 (27%), Positives = 144/323 (44%), Gaps = 23/323 (7%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++  L    + +L +L +ERGL+  TL +Y  D  +++  L              +++  
Sbjct: 1   MADRLTAALEGYLAHLAVERGLAAHTLAAYRRDLTRYVAHLHARGR-----TEPAEITER 55

Query: 70  EIRAFISKRRTQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           +   ++   RT       +   S  RS+  ++ + ++L    +        +R   +   
Sbjct: 56  DAEDYVLVLRTGSDGRAVLSPASAARSVVALRGWHRFLALDGLAPTDAAAELRPPAQPRR 115

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD- 183
           LP+A+       L+D   L        +  R+ A+L L+Y  G RISEA+ L   ++   
Sbjct: 116 LPKAIGVDDVARLLDAAGL----GDGPVPLRDRALLELVYSTGARISEAVGLDVDDLDLT 171

Query: 184 -DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNP 240
            D+  +R+ GKG K R+VP+     +A+  Y       L         +F   RG  L+ 
Sbjct: 172 PDRGAVRLLGKGGKERVVPVGSYAAQAVDAYLVRGRPALAAAGRGTPAIFLNTRGARLSR 231

Query: 241 GVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                 +R      GL     + HTLRHSFATHLL+ G D+R +Q +LGH  ++TTQIYT
Sbjct: 232 QSAWAVLRTAAERAGLAADHLSPHTLRHSFATHLLAGGADVRVVQELLGHASVATTQIYT 291

Query: 300 NVNSKNGGDWMMEIYDQTHPSIT 322
            V      D M E+Y  +HP   
Sbjct: 292 LVTP----DTMREVYAASHPRAR 310


>gi|329947868|ref|ZP_08294800.1| phage integrase, SAM-like domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328523492|gb|EGF50590.1| phage integrase, SAM-like domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 306

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 85/302 (28%), Positives = 142/302 (47%), Gaps = 6/302 (1%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            + + L ++R LS+ T ++Y  D    L FL     +      +  L   ++R +++   
Sbjct: 11  AYHRYLSLQRDLSQHTARAYLVDICDLLSFLGVGEGDAPIGAALATLDLADLRDWLAALA 70

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  +L R  + +++F  +  +  I T      +R  +  N LP  L  +QA  L+ 
Sbjct: 71  ASGHSRATLARRSASVRTFSAWAFEEGILTSDVAARLRAPRVDNRLPGVLTAQQAAQLLQ 130

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                 + +   +  R+ AI   LY  G+R+SE + L   ++   Q TLR+ GKG K R 
Sbjct: 131 -TAADLAADGDILAVRDLAIAETLYATGVRVSELVGLDVTDLDHSQRTLRVLGKGRKERT 189

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VP      +A+  +          +    LF G RG+ ++P   +  + +L    G+P  
Sbjct: 190 VPYGLPAARALEGWLSRREEICAPDAGTALFLGARGRRIDPRAARDIVHRLCAAAGVP-D 248

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRHS ATH+LS G DLRS+Q +LGH  L+TTQ YT+V+++     +  +Y+Q  P
Sbjct: 249 LGPHGLRHSAATHVLSGGADLRSVQELLGHSSLATTQRYTHVSAER----LRSVYEQAFP 304

Query: 320 SI 321
             
Sbjct: 305 RA 306


>gi|312880071|ref|ZP_07739871.1| integrase family protein [Aminomonas paucivorans DSM 12260]
 gi|310783362|gb|EFQ23760.1| integrase family protein [Aminomonas paucivorans DSM 12260]
          Length = 308

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 100/309 (32%), Positives = 160/309 (51%), Gaps = 19/309 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L    +++L  L +ERG S+ TL++Y  D   F  F A   +     +        E+  
Sbjct: 18  LCLPFESFLTYLALERGASEHTLRAYRSDLTHFEDFCARRGKPPCPPEE------NELTL 71

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+ + + Q +   S++R  + ++SFL++L+++     S    +    +   LP+ L E +
Sbjct: 72  FLRELQRQGLAASSVQRRAACLRSFLRFLQEQGEPAASR-EPLSLPDRPAPLPQILTEGE 130

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++     T   +  +D R+ A+  L+YGCGLR SEA SL  +++     TLR+QGK
Sbjct: 131 VGRLLE-----TCDGSASLDLRDRALFELIYGCGLRASEACSLRLRDVDFTGGTLRVQGK 185

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K RIVPLL  VRKA+  Y      +   + +  L      +PL      R +R+    
Sbjct: 186 GNKTRIVPLLGEVRKAVERYLAAGRGEAPGDPE-ALLLSRNRRPLRREDLWRIVRRRGVQ 244

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+P      H LRHSFATHLL +G DLR++QS+LGH  L TT+ YT+ + +     + +
Sbjct: 245 AGIPSSRLHPHILRHSFATHLLRHGMDLRTLQSLLGHASLGTTEKYTHFDQE-----LRD 299

Query: 313 IYDQTHPSI 321
           +YD+ HP  
Sbjct: 300 VYDRAHPRA 308


>gi|163754938|ref|ZP_02162059.1| site-specific recombinase [Kordia algicida OT-1]
 gi|161325005|gb|EDP96333.1| site-specific recombinase [Kordia algicida OT-1]
          Length = 298

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 148/305 (48%), Gaps = 16/305 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++   L IERGLS+ T+ +Y  D  + + F+         +     +    ++ FI  
Sbjct: 7   LRDFQHFLRIERGLSENTIVNYSHDIEKLIRFVENNAINHSPLS----IDEATVQQFI-Y 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + +  RS  R +SG+KSF  YL       ++    +   K    LP  L  K    L
Sbjct: 62  EIAKVLNARSQTRIISGLKSFFNYLVFEDYRKDNPTELIEAPKIGRKLPDTLALKDIEKL 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +          +K    RN AI+  LYGCGLR+SE ++L   ++  D+  +R+ GKGDK 
Sbjct: 122 I-----AAIDLSKNEGHRNKAIIETLYGCGLRVSELVNLKISDLFFDEGFIRVTGKGDKQ 176

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R VP+    +K I  Y       +    +    +F   RGK L   +    +++L    G
Sbjct: 177 RFVPISSITKKYINLYIQGQRQHVPYIPEFGDTVFLNRRGKQLTRVMIFTIVKRLTEKSG 236

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L  + + HT RHSFATHLL NG DLR+IQ +LGH  ++TT+IY +V+  +    + ++ +
Sbjct: 237 LKKNISPHTFRHSFATHLLENGADLRAIQLMLGHESITTTEIYMHVDRSH----LAKVME 292

Query: 316 QTHPS 320
           + HP 
Sbjct: 293 KYHPR 297


>gi|38233776|ref|NP_939543.1| site-specific tyrosine recombinase XerD [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200037|emb|CAE49713.1| integrase/recombinase [Corynebacterium diphtheriae]
          Length = 311

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 84/314 (26%), Positives = 146/314 (46%), Gaps = 23/314 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + WL +L +E+G+S  TL +Y  D  ++  +L         I  I  +S  +I  ++ + 
Sbjct: 9   RQWLTHLAVEKGVSDNTLSNYRRDLERYTRWLQVQ-----GITDIENISAQDIERYVQEL 63

Query: 79  RTQKIGDRSLK--------RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           R +   D   K        R+L   +   ++     +       ++        LP  L+
Sbjct: 64  R-KGDSDTGKKPLAASSAARALIVARGLHRFALLENLVENDVSADVSPPAMGRHLPDTLS 122

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQST 187
            ++   L++ + +         + R+ A+L  LY  G RISEA+ L   +   I++++  
Sbjct: 123 VEEVNRLIEAIPI--DDAASPENLRDCALLEFLYATGARISEAVGLVVDDVAAIVENEGI 180

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           +RI GKG+K RIVP+      A+  Y       ++      LF   RG  L+     + +
Sbjct: 181 VRITGKGNKQRIVPVGDQCLSALERYVVRSRPAMSKGKSHALFLNKRGGQLSRQSAWQIL 240

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +   +  G+    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT+V      
Sbjct: 241 KNSAQRAGIEKDISPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTHVT----A 296

Query: 308 DWMMEIYDQTHPSI 321
           D +  ++ ++HP  
Sbjct: 297 DNLRFVWSRSHPRA 310


>gi|307546449|ref|YP_003898928.1| site-specific tyrosine recombinase XerD [Halomonas elongata DSM
           2581]
 gi|307218473|emb|CBV43743.1| site-specific tyrosine recombinase XerD [Halomonas elongata DSM
           2581]
          Length = 300

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 91/304 (29%), Positives = 140/304 (46%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +ERG S  TL +Y  D   +   LA          T+       +  ++ +
Sbjct: 11  IDAFLDGLWLERGASDNTLAAYRHDLNTWQARLAGLG------ATLLAPPPRALPDWLDE 64

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           RR      RS  R LS ++ F  +           +  ++  + + SLP  L E +   L
Sbjct: 65  RREAGYKLRSNARLLSSLRRFYHWALGEGRIEYDPLAEIKLPRVTPSLPNTLEEGEVERL 124

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++            +  R+ A+L +LYG GLR++E + LT   +   Q  +R++GKGDK 
Sbjct: 125 LE-----APDVDTELGLRDRAMLEVLYGAGLRVTELVGLTTDALNLRQGVVRVRGKGDKE 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       +  Y       L  ++  P LF G     L    F   I+   R  G+
Sbjct: 180 RLVPLGEEAVDWLSLYLRSARGALMRDVTRPALFPGRGDACLTRQAFWYRIKAHARSAGI 239

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S + HTLRH+FATHLL++G +LR +Q +LGH  LSTTQIYT+V        +  ++ +
Sbjct: 240 DRSLSPHTLRHAFATHLLNHGANLRVVQLLLGHSDLSTTQIYTHVAQVR----LEALHAE 295

Query: 317 THPS 320
            HP 
Sbjct: 296 HHPR 299


>gi|294056182|ref|YP_003549840.1| integrase family protein [Coraliomargarita akajimensis DSM 45221]
 gi|293615515|gb|ADE55670.1| integrase family protein [Coraliomargarita akajimensis DSM 45221]
          Length = 307

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 94/307 (30%), Positives = 152/307 (49%), Gaps = 12/307 (3%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           +   +  +L +ER LS+ T+++Y      F+  +      +     IR +   ++R+F+ 
Sbjct: 11  QLDAFCAHLALERRLSEYTVRNYRHAVEVFVESVQERGNWQGDFAAIRSV---DVRSFLV 67

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            +  +K+  R+L   +SG+++F  YL+K+     +    +   K    LP+ L E Q   
Sbjct: 68  DQ-GRKVSRRTLHNQVSGLRAFYLYLRKQGQVESNPFAGVSLPKLDKPLPKFLTESQMRR 126

Query: 137 LVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           L+D    L      +++   R+S IL LLYG GLR+SE  +L    I   +   R+ GKG
Sbjct: 127 LLDAPVELWKAGKLSEFDAFRDSLILELLYGGGLRVSELCALNHGAIDLQRGVARVIGKG 186

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K R+ PL P   + +  + D       L+  +   R  R   + P + Q+ ++      
Sbjct: 187 QKERLCPLGPVAIQCLKTFVDRFKLSAELDQAVACQRNGR--RMEPRMVQKQLKLHLAQA 244

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            LP   T H LRHS+ATHLL NG DLR++Q +LGH  LSTTQ+YT+V+       + E +
Sbjct: 245 ELPSDMTPHKLRHSYATHLLDNGADLRAVQELLGHANLSTTQVYTHVSIAR----LKEAH 300

Query: 315 DQTHPSI 321
            Q HP  
Sbjct: 301 KQAHPRA 307


>gi|312793099|ref|YP_004026022.1| tyrosine recombinase xerd [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180239|gb|ADQ40409.1| tyrosine recombinase XerD [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 291

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 79/308 (25%), Positives = 142/308 (46%), Gaps = 18/308 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +   + +  +L+ +   S+ T+ SY  D ++++ FL     + I I+ +   S   + A+
Sbjct: 1   MSIIEAFGNHLQRQNRFSQNTISSYLRDAKKYIEFL-----DNIKIK-LENTSQATLIAY 54

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I   +     + ++ R++  +K F  +LK + I     I  +   K   S P+ L   + 
Sbjct: 55  IISMQKSGKSNSTIARAIVSLKVFYDFLKTQNIVDIGKIE-IEPPKLEKSPPQILTRDEV 113

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+         E      R+ A+L LLY  G+R+SE ++L   +I  +   +  + K 
Sbjct: 114 EKLL-----SCPKEDDIKGIRDKAMLELLYATGIRVSELINLNLDDINLEHGYIICKNKK 168

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
              R++P+      A+  Y     P+      +  LF    G+ +    F + ++   + 
Sbjct: 169 R-DRVIPIGSYAISAVERYLRHSRPYLAKNKDEEALFLNFNGERMTRQGFWKIVKFYAQS 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    T H LRHSFATHL+ NG D+R++Q +LGH  +STTQ Y  V +      + E+
Sbjct: 228 AGIDKEITPHVLRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVAN----VKLKEV 283

Query: 314 YDQTHPSI 321
           Y +THP  
Sbjct: 284 YQKTHPRA 291


>gi|226949108|ref|YP_002804199.1| tyrosine recombinase XerD [Clostridium botulinum A2 str. Kyoto]
 gi|226843555|gb|ACO86221.1| tyrosine recombinase XerD [Clostridium botulinum A2 str. Kyoto]
          Length = 291

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 162/304 (53%), Gaps = 17/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +N++++L+ ++ LSK TL++Y  D  +F  F+    E+ +++ T+       I AF+  
Sbjct: 5   IENYIKDLQ-KKNLSKNTLEAYRRDVEKFSEFVRNREEKILSVDTVT------IMAFVQY 57

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            + +     S+ R++  I++F KYL K+ + +E   L     K   ++P+ L+ ++   L
Sbjct: 58  LQREGRATSSIVRNIVSIRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILSVEEVDKL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++      S ++     R+ A+L L+Y  G++I+E L+L   +I    + ++ +G   + 
Sbjct: 118 LN------SPDSSKKGLRDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRE 171

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RI+P+     K +  Y ++ P  +N+     LF  ++G  +    F + I+   +   + 
Sbjct: 172 RIIPIGSYAIKCLKNYLEVRP-AINVYNLDYLFLNLKGTQMTRQGFWKIIKFYAKEASID 230

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
               ++TLRHSFA HLL NG D++S+Q +LGH  L+ TQIY++++ K+    + E+Y   
Sbjct: 231 KEIDSYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKS---KIAEVYKNA 287

Query: 318 HPSI 321
           HP  
Sbjct: 288 HPRA 291


>gi|256824962|ref|YP_003148922.1| site-specific recombinase XerD [Kytococcus sedentarius DSM 20547]
 gi|256688355|gb|ACV06157.1| site-specific recombinase XerD [Kytococcus sedentarius DSM 20547]
          Length = 336

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 87/345 (25%), Positives = 153/345 (44%), Gaps = 41/345 (11%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + +  LL+E + +  +L +ERG S  T+++Y  D       L     E       RQ++ 
Sbjct: 1   MSATGLLREVEGFADHLLLERGRSPHTVRAYTADLTALAEHL-----EAAGATEWRQVTL 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           +++R+F ++R    +   +L R  +  ++F  ++   +         + + +    LP  
Sbjct: 56  SDLRSFAARRAAAGLARSTLARGTASQRTFFGWMVATERLVVDPSARLVSPRVEKRLPAV 115

Query: 129 LNEKQALTLVD-------------------------------NVLLHTSHETKWIDARNS 157
           L  +QA  LV+                                        +   D R+ 
Sbjct: 116 LRAEQAAQLVEGGGTRPEPRATGGAGDPGGDTQTDTDTDTDAAPGTEADPVSLATDLRDR 175

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL- 216
           A+L LLY  G+R+ E +SL    +     T+R+ GKG K R+VP      +A+ E+    
Sbjct: 176 AVLELLYATGIRVGELVSLDTGAVSLQDHTVRVWGKGSKERVVPFGVPALRALEEWVHQG 235

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
            P  L       LF G+RG  ++P   +R + +  + +        H LRHS ATH++  
Sbjct: 236 RPELLGARSGEALFLGVRGGRIDPREVRRVVHRAAQRVEGAADIGPHGLRHSAATHMVDA 295

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           G D+RS+Q +LGH  L+TTQ+YT+V+ +     + E +D++HP  
Sbjct: 296 GADIRSVQELLGHASLATTQVYTHVSVER----LREAFDRSHPRA 336


>gi|170719429|ref|YP_001747117.1| site-specific tyrosine recombinase XerC [Pseudomonas putida W619]
 gi|254799352|sp|B1J1V8|XERC_PSEPW RecName: Full=Tyrosine recombinase xerC
 gi|169757432|gb|ACA70748.1| tyrosine recombinase XerC [Pseudomonas putida W619]
          Length = 299

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 84/312 (26%), Positives = 150/312 (48%), Gaps = 17/312 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++ + +  +L  ER +S+ TL +Y  D  + + +          I     L   ++R 
Sbjct: 1   MERQLEAYCAHLRNERQVSEHTLLAYRRDLEKVIEYCNTQ-----GIAGWGALQIQQLRQ 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            I+++  Q    RSL R LS ++   +YL +  +        +   K    LP+ L+  +
Sbjct: 56  LIARQHHQGQSSRSLARLLSAVRGLYRYLNREGLCQHDPASGLSAPKGERRLPKVLDTDR 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           AL L+D  +     +  +I  R+ AIL L Y  GLR+SE  +L  +++      +++ GK
Sbjct: 116 ALQLLDGGV-----DDDFIARRDQAILELFYSSGLRLSELTNLDLEHLDLAAGLVQVLGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R++P+    R+A+ ++  L    +       +F   +G  L P   Q  ++     
Sbjct: 171 GGKARVLPVGRKAREAMQQWLRLRG--IGGPRDGAVFISRQGNRLGPRAIQMRVKAAGER 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRHSFA+H+L +  DLR++Q +LGH  +STTQIYT+++ ++    +  +
Sbjct: 229 -ELGQHLHPHMLRHSFASHVLESSQDLRAVQEMLGHADISTTQIYTHLDFQH----LAAV 283

Query: 314 YDQTHPSITQKD 325
           YD  HP   +  
Sbjct: 284 YDSAHPRAKRSK 295


>gi|89898494|ref|YP_515604.1| site-specific tyrosine recombinase XerC [Chlamydophila felis
           Fe/C-56]
 gi|123763207|sp|Q253S9|XERC_CHLFF RecName: Full=Tyrosine recombinase xerC
 gi|89331866|dbj|BAE81459.1| integrase/recombinase [Chlamydophila felis Fe/C-56]
          Length = 312

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 91/319 (28%), Positives = 147/319 (46%), Gaps = 22/319 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT-------------EEKITI 60
           ++     +L  L+  +  S  TL++Y  D   F +FL  +              E + T 
Sbjct: 1   MVSAFYAFLDYLKNIKAASPHTLRNYCIDLNSFKVFLEKHGKLSPSMPICLFSKERQETN 60

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
                 +   +R +I +   +    R++KR LS IKSF  Y  K +I  E     +   +
Sbjct: 61  LPFSLFTKDAVRLYILELMQENKAKRTIKRRLSAIKSFSHYCLKHRILLEDPTETIHGPR 120

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LP  +  +Q   L+      T   +K+   R+  +L L Y  GLRISE +SL   +
Sbjct: 121 LPKELPSPITYEQVEILM-----ATPDLSKYTGLRDRCLLELFYSSGLRISEIVSLNHWD 175

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I  + + +RI+GKG K RI+P+     + + +Y +             +F    G  L  
Sbjct: 176 IDFNSNLIRIRGKGKKERIIPITTLAAQWLKQYLNHPERAGVAKDSQAIFLNCFGTRLTT 235

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               R  ++  R  GL  + T HT+RH+ ATH L NG DL++IQ++LGH  L TT IYT+
Sbjct: 236 RSIDRKFQKYLRLSGLSGNITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTH 295

Query: 301 VNSKNGGDWMMEIYDQTHP 319
           V+ K       + ++++HP
Sbjct: 296 VSMKLK----KQTHNESHP 310


>gi|34222917|sp|Q8PGR5|XERD_XANAC RecName: Full=Tyrosine recombinase xerD
 gi|21109924|gb|AAM38394.1| integrase-recombinase XerD [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 305

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 89/311 (28%), Positives = 141/311 (45%), Gaps = 23/311 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L     E+G+++ TL+SY  D      +        + I          +  ++  
Sbjct: 9   IERFLDRFWAEQGVARQTLESYRRDLEGLARWRDGAGGGLLGI------DRAALFDYLRW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R       RS  R LS +++F     +    ++     +       SLP+AL E Q   L
Sbjct: 63  RTRANYSPRSTARLLSTLRAFYGLCLRDGARSDDPTALIDPPHLPRSLPKALTESQIEAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L           R+ A+L L+Y  GLR+SE ++L    +   Q  LR+ GKG K 
Sbjct: 123 -----LAAPDLDTPAGLRDRAMLELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKD 177

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNI-------QLPLFRGIRGKPLNPGVFQRYIRQL 250
           R+VPL    +  +  Y       L  N        Q+PLF  +  +PL+   F   +++ 
Sbjct: 178 RLVPLGEESQHWLERYLREARPLLAANKPVAAVDGQVPLFIDVSRQPLSRQQFWALVKRY 237

Query: 251 RRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
               G+ P + + H LRHSFATHLL++G DLR++Q +LGH  LSTTQIYT V  ++    
Sbjct: 238 AAVAGIDPATVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQH---- 293

Query: 310 MMEIYDQTHPS 320
           + +++   HP 
Sbjct: 294 LQKLHASHHPR 304


>gi|188581692|ref|YP_001925137.1| tyrosine recombinase XerD [Methylobacterium populi BJ001]
 gi|179345190|gb|ACB80602.1| tyrosine recombinase XerD [Methylobacterium populi BJ001]
          Length = 332

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 90/314 (28%), Positives = 139/314 (44%), Gaps = 22/314 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L  L  ERG +  TL +Y  D   +L +LA             +    ++RA+I+  
Sbjct: 17  QLFLDMLAAERGAAANTLAAYRRDLDDYLGYLAQQGI------DPEEAQADQVRAYIASL 70

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   S  R LS I+ F ++L             +   +++  LP+ L+  +   L+
Sbjct: 71  EPRGLKASSAARRLSCIRGFHRFLYAEGYCETDPTAPVAAPRRAKGLPKILSVAEVDRLL 130

Query: 139 ----DNVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
               D V       T+    AR   +L LLY  GLR+SE ++L        +  L ++GK
Sbjct: 131 ATARDRVEAAGDDRTEARSAARMLCLLELLYATGLRVSELVALPRSAASARERYLVVKGK 190

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRR 252
           G + R+VPL    R+A+  +      D        LF        L    F R ++    
Sbjct: 191 GGRERLVPLTELAREAMRAHVAHLTADGAW-----LFPADSESGHLTRQAFARDLKVAAA 245

Query: 253 YLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             GL     + H LRH+FA+HLL NG DLR +Q +LGH  +STTQIYT+V  +     + 
Sbjct: 246 AAGLRTDRVSPHVLRHAFASHLLQNGADLRIVQELLGHADVSTTQIYTHVLDERLKGMVR 305

Query: 312 EIYDQTHPSITQKD 325
           ++    HP   Q D
Sbjct: 306 DL----HPLNDQSD 315


>gi|332675806|gb|AEE72622.1| tyrosine recombinase XerD [Propionibacterium acnes 266]
          Length = 306

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 92/312 (29%), Positives = 149/312 (47%), Gaps = 21/312 (6%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           + +++L++L +ERGLS  T+Q+Y  D  ++  +L         I ++ +++  ++  F  
Sbjct: 8   QAEDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLGSR-----GIGSLAEVTRVDVEEFRR 62

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                 +   S+ R +  +++  ++              M    +S  LP+AL+  Q  +
Sbjct: 63  HLDHIGLAPASVTRCVVAVRNLHRFAVGSGQLQADVTAGMSPGTRSRRLPKALSMDQVES 122

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----MDDQSTLRIQG 192
           L     L     +     R++A+L LLYG G R+SEA +L   +I     D    LR+ G
Sbjct: 123 L-----LAAPDTSTVEGLRDAALLELLYGTGARVSEACALDVDDIRPVLDDPDLGLRLIG 177

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLN--LNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           KGDK RIVPL     KA+  +            N +  L    RG+ L+       IR+ 
Sbjct: 178 KGDKERIVPLGSYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRRA 237

Query: 251 RRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
               GL +   + H+LRHS+ATHLL  G D+R +Q +LGH  ++TTQIYT V      D 
Sbjct: 238 GEAAGLDVEHLSPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVT----ADH 293

Query: 310 MMEIYDQTHPSI 321
           + E+Y  +HP  
Sbjct: 294 LREVYRSSHPRA 305


>gi|224541324|ref|ZP_03681863.1| hypothetical protein CATMIT_00484 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525761|gb|EEF94866.1| hypothetical protein CATMIT_00484 [Catenibacterium mitsuokai DSM
           15897]
          Length = 310

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 96/318 (30%), Positives = 164/318 (51%), Gaps = 19/318 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           + E++ +L  L+ ++  S LTLQSYE +   FL+F+   +       +++++ Y  I+ +
Sbjct: 1   MDEKKAFLHYLKYQKNYSVLTLQSYERELTDFLLFIGKESI------SLQEVDYYVIQNY 54

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +     + +   ++   LS ++SF KYL ++     +    + +LK  +  P  L   + 
Sbjct: 55  LIYLNEKHLSHTTINHYLSSLRSFFKYLCQQNSVVSNPFSQVHSLKTGSRNPDFLYVDEM 114

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           +  +D++  HTS     +  RN A+L L+Y  GLR+SE +SL    I  ++  +R+ GKG
Sbjct: 115 MGYLDSIDTHTS-----LGVRNKALLELMYASGLRVSEVVSLRLSQIDFNRQMIRVLGKG 169

Query: 195 DKIRIVPLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            K R VP     +K +L+Y +   +   +        +F   RGK L     +  I +  
Sbjct: 170 SKEREVPFHDYAKKWLLQYINDDRISIMNEYHEAHDYVFVNRRGKKLTNRGVENIIDRTM 229

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
                      HT+RHSFATHLL  G D+R +Q +LGH  LSTTQIYT+V+ ++    + 
Sbjct: 230 YLYDPLRKIHPHTIRHSFATHLLDAGMDIRVVQELLGHSSLSTTQIYTHVSQEH----LR 285

Query: 312 EIYDQTHPSIT-QKDKKN 328
           E+Y++T P    +K +KN
Sbjct: 286 EVYNRTCPRQEFKKIEKN 303


>gi|218131354|ref|ZP_03460158.1| hypothetical protein BACEGG_02969 [Bacteroides eggerthii DSM 20697]
 gi|217986286|gb|EEC52623.1| hypothetical protein BACEGG_02969 [Bacteroides eggerthii DSM 20697]
          Length = 294

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 80/303 (26%), Positives = 144/303 (47%), Gaps = 13/303 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L  L  ER  SK T++ Y+ D  +   F     EE +   T   +    IR +I+  
Sbjct: 5   DSFLDYLLYERNYSKGTVRYYQADILELQKF----GEELLGDLTPSDVDAGLIREWITSL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     ++ R LS ++S+ KYL ++ +     +  +   KK   LP  L E     L+
Sbjct: 61  MDRGCAPNTVNRKLSSVRSYYKYLLRKGMVAADPLQKITGPKKKKPLPVFLREGDVNRLL 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D           +   R+  I+ + Y  G+R+SE + L  ++I    S +++ GK +K R
Sbjct: 121 D----DVDFGEGFEGCRDRLIIEMFYATGMRLSELIGLDDKDIDFSASLIKVTGKRNKQR 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++P    +R ++ EY ++    L +      F    G+ LN  +    +++    +    
Sbjct: 177 LLPFDEELRCSMQEYVNVRNQALPVR-SDAFFIRKTGERLNRSIVAYIVKRNLSKVVTVK 235

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FAT +L+NG DL SI+ +LGH  L+TT++YT+   +     + ++Y+Q H
Sbjct: 236 KRSPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEE----LKKVYNQAH 291

Query: 319 PSI 321
           P  
Sbjct: 292 PRA 294


>gi|187925186|ref|YP_001896828.1| site-specific tyrosine recombinase XerD [Burkholderia phytofirmans
           PsJN]
 gi|187716380|gb|ACD17604.1| tyrosine recombinase XerD [Burkholderia phytofirmans PsJN]
          Length = 311

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 139/304 (45%), Gaps = 17/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +   L +E GLS+ TL +Y  D R F  +LA          ++   S  ++ A+ + 
Sbjct: 23  IDAFCDALWLEHGLSRNTLDAYRRDLRLFCEWLAQSRN-----ASLDTASEADLNAYSAA 77

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           RR  K    S  R LS  + +  +  +   T     + +R+ K+    P  L+E Q   L
Sbjct: 78  RRKDK--STSANRRLSVFRRYYGWAVREHRTKVDPTVRIRSAKQPPRFPSTLSEAQVEAL 135

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +             +  R+  +L L+Y  GLR++E ++L    +  ++  +R+ GKG K 
Sbjct: 136 L-----GAPDINTALGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKE 190

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R++P        I  Y     P  L       LF   R + +    F   I++     G+
Sbjct: 191 RLIPFGEEAHSWIERYLREARPALLGARATDALFVTNRAEGMTRQQFWNIIKRHAVVAGV 250

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++ Q
Sbjct: 251 HAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARER----LKSLHAQ 306

Query: 317 THPS 320
            HP 
Sbjct: 307 HHPR 310


>gi|212715594|ref|ZP_03323722.1| hypothetical protein BIFCAT_00493 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660961|gb|EEB21536.1| hypothetical protein BIFCAT_00493 [Bifidobacterium catenulatum DSM
           16992]
          Length = 308

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 86/315 (27%), Positives = 160/315 (50%), Gaps = 20/315 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + +   L+  RGLS+ T ++Y  D  + L+ L     E++  + + +++  ++R ++
Sbjct: 5   ESVEAFDTYLKANRGLSENTRKAYRGDVEECLLAL-----ERLGCRNLNEVTIEDLRMWM 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++  ++K    S+ R    ++ F  +  +  +TT      +   K  ++LP  L+E QA 
Sbjct: 60  AE-SSKKHAKSSMARKTVAVRGFFAWTHEHGVTTTDPACVLMTPKIPDTLPDVLSESQAE 118

Query: 136 TLVDNVLLHTS--------HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L++ V   +          + + I+ R++A+L LLY  G+R++E + L   +++    T
Sbjct: 119 QLMERVDEDSETSQPKERTMKQQAIELRDAAMLELLYATGMRVAELVGLDVPDVVFSNRT 178

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           +++ GKG+K R++P     +KAI  + D   P  +       LF G +GK ++  + +R 
Sbjct: 179 VKVTGKGNKQRVMPFGAPAQKAIRRWLDDGRPLLVGEQSAAALFLGRQGKRIDQRMVRRV 238

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +    R  G+P   + H LRHS ATH+L  G DLR +Q +LGH  L TTQ YT+V+ +  
Sbjct: 239 VHACARDAGVP-DISPHALRHSAATHMLDGGADLREVQELLGHSSLKTTQRYTHVSIEQ- 296

Query: 307 GDWMMEIYDQTHPSI 321
              +   Y Q  P  
Sbjct: 297 ---LKARYGQAFPRA 308


>gi|219848360|ref|YP_002462793.1| integrase family protein [Chloroflexus aggregans DSM 9485]
 gi|219542619|gb|ACL24357.1| integrase family protein [Chloroflexus aggregans DSM 9485]
          Length = 299

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 85/289 (29%), Positives = 140/289 (48%), Gaps = 12/289 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L  ER +S  T  +Y  D  Q   FL     ++  I+    ++   + AF+   +
Sbjct: 7   QFLAYLADERKMSANTTAAYRTDLEQLCSFL-----QERGIEQWNDVNTEAMLAFVITLK 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +K  + ++ R L+ IKSF  +L++R +        +   +     P+A+++ Q   L++
Sbjct: 62  EKKYANSTVARRLAAIKSFFSFLRERNVVHHDPTEQLDAPRVDRFPPKAISQHQVDELLE 121

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             L    + +     R+ A+L +LY  G+R+SE ++L   +I     T+R  G+  + RI
Sbjct: 122 LPL---QNNSGPEGLRDKAMLEVLYATGMRVSELVALNIDDISFTSKTVRCLGRQGRERI 178

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +PL  +   A+ EY D+    L  +       LF   RGK L    F   +++     GL
Sbjct: 179 LPLSEAALTALEEYLDIARPKLANHAHGNDEALFLNHRGKRLTRQGFWLILKEYADRAGL 238

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
               T H LRHSFA H L NG DLR +Q  LGH  ++TTQIYT++  + 
Sbjct: 239 H-DLTPHMLRHSFAAHQLRNGVDLRELQERLGHASIATTQIYTHLTEEE 286


>gi|325201493|gb|ADY96947.1| tyrosine recombinase XerC [Neisseria meningitidis M01-240149]
 gi|325207473|gb|ADZ02925.1| tyrosine recombinase XerC [Neisseria meningitidis NZ-05/33]
          Length = 305

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 86/313 (27%), Positives = 147/313 (46%), Gaps = 13/313 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
                  +L+N+  E G S  T+ +Y  D  +    LA    E       + LS  +  A
Sbjct: 6   FAAHFDAYLENIVRE-GKSGHTVAAYRRDLEELFALLAQMPSEDAG-GVPQGLSQRDFTA 63

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            + +   + +  R+L R LS  + +  +L KR +       +++  K+   +P+AL ++ 
Sbjct: 64  ALRRLSQRGLNARTLARKLSSWRQYCAWLVKRGLLHTDPTADIKPPKQPERVPKALPQEW 123

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++D  +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GK
Sbjct: 124 LNRMLDLPV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGK 179

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R VPL+    +A+  Y  L     +      LF G  G  L+    Q+ + Q    
Sbjct: 180 GRKQRQVPLVGKSVEALKNYLSLRQTASDGK---ALFTGRNGTRLSQRQIQKRLAQWAAQ 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G     + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +
Sbjct: 237 NGDGRHVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARL 292

Query: 314 YDQTHPSITQKDK 326
           YD+ HP   ++D+
Sbjct: 293 YDEAHPRAKRQDE 305


>gi|161869347|ref|YP_001598514.1| integrase/recombinase [Neisseria meningitidis 053442]
 gi|189030079|sp|A9M1G2|XERC_NEIM0 RecName: Full=Tyrosine recombinase xerC
 gi|161594900|gb|ABX72560.1| integrase/recombinase [Neisseria meningitidis 053442]
          Length = 305

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 85/313 (27%), Positives = 147/313 (46%), Gaps = 13/313 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
                  +L+N+  E G S+ T+ +Y  D  +    LA    E       + LS  +  A
Sbjct: 6   FAAHFDAYLENIVRE-GKSEHTVAAYRRDLEELFALLAQMPSEAEG-GVPQGLSRRDFTA 63

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            + +   + +  R+L R LS  + +  +L +R +       +++  K+   +P+AL ++ 
Sbjct: 64  ALRRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEW 123

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++D  +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GK
Sbjct: 124 LNRMLDLPV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGK 179

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R VPL     +A+  Y  L     +      LF G  G  L+    Q+ + Q    
Sbjct: 180 GRKQRQVPLTGKSVEALKNYLPLRQTASDGK---ALFTGRNGTRLSQRQIQKRLAQWAAQ 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G     + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +
Sbjct: 237 NGDGRHVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARL 292

Query: 314 YDQTHPSITQKDK 326
           YD+ HP   ++D+
Sbjct: 293 YDEAHPRAKRQDE 305


>gi|325143762|gb|EGC66079.1| tyrosine recombinase XerC [Neisseria meningitidis M01-240013]
          Length = 305

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 85/313 (27%), Positives = 147/313 (46%), Gaps = 13/313 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
                  +L+N+  E G S+ T+ +Y  D  +    LA    E       + LS  +  A
Sbjct: 6   FAAHFDAYLENIVRE-GKSEHTVAAYRRDLEELFALLAQMPSEAEG-GVPQGLSQRDFTA 63

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            + +   + +  R+L R LS  + +  +L +R +       +++  K+   +P+AL ++ 
Sbjct: 64  ALRRLSQRGLNARTLARKLSSWRQYCVWLVERGLMRADPTADIKPPKQPERVPKALPQEW 123

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++D  +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GK
Sbjct: 124 LNRMLDLPV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGK 179

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R VPL     +A+  Y  L     +      LF G  G  L+    Q+ + Q    
Sbjct: 180 GRKQRQVPLTGKSVEALKNYLPLRQTASDGK---ALFTGRNGTRLSQRQIQKRLAQWAAQ 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G     + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +
Sbjct: 237 NGDGRHVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARL 292

Query: 314 YDQTHPSITQKDK 326
           YD+ HP   ++D+
Sbjct: 293 YDEAHPRAKRQDE 305


>gi|297626642|ref|YP_003688405.1| integrase/recombinase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296922407|emb|CBL56979.1| Integrase/recombinase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 308

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 85/301 (28%), Positives = 141/301 (46%), Gaps = 10/301 (3%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   L ++R  S  T ++Y  D R+  +FL     +   +     +  T++R +++ ++ 
Sbjct: 18  FADYLRLQRRRSANTERAYLTDLRELALFL-----QGRGVHDPDHVRLTDLRRWLASQQA 72

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            +    ++ R     + F  + ++           +R+ K    LP+ L + +   L+D 
Sbjct: 73  SE-APATVARRAGTARVFFGWARETGRLGTDPAAGLRSPKLGRRLPQTLTQTEVRELMDA 131

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                +        R+ AIL  LYG GLR+SE   L   ++ + +  +R+ GKGDK RIV
Sbjct: 132 AAAAAAEAGGVRGLRDVAILETLYGSGLRVSELCGLDVGDLDEARGLVRVIGKGDKERIV 191

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           PL     +AI  +  +    +       LF G RG  +N  V +R + +  R +      
Sbjct: 192 PLGLPGLRAIDAWRAVRDQWVAPASANALFLGTRGGRINQRVVRRVVHESMRAVPEAPDI 251

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
             H LRH+ ATHLL  G DLRS+Q +LGH  LSTTQIYT+V+ +     +   Y+Q  P 
Sbjct: 252 GPHGLRHAMATHLLEGGADLRSVQEMLGHASLSTTQIYTHVSDER----VRAAYEQAFPR 307

Query: 321 I 321
            
Sbjct: 308 A 308


>gi|199599532|ref|ZP_03212920.1| Integrase [Lactobacillus rhamnosus HN001]
 gi|199589573|gb|EDY97691.1| Integrase [Lactobacillus rhamnosus HN001]
 gi|259649723|dbj|BAI41885.1| integrase [Lactobacillus rhamnosus GG]
          Length = 298

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 146/307 (47%), Gaps = 12/307 (3%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +K    + + L +ER  S  T+ +Y  D ++F  FL              ++   +++ +
Sbjct: 1   MKPLAAFQEYLTVERQYSPETVTAYLNDIQEFQAFLKANG----GFTDFSKVDDLDVQTY 56

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++    Q +   S+ R +S ++SF +YL +  +   +    +   K+ + LP+   E + 
Sbjct: 57  LTDLNKQALARTSIARKISSLRSFYRYLVRIDVVKRNPFELVELKKQHHHLPQFFYEAEI 116

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L       T      +D RN A+L +LYG G+R+SE  +LT   +  +   L I GKG
Sbjct: 117 QELF-----KTVEGKTPLDQRNRALLEVLYGTGIRVSECANLTLNQVDFNTGLLLIHGKG 171

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNI---QLPLFRGIRGKPLNPGVFQRYIRQLR 251
           +K R VP     ++A+  Y       L          +F    G+P+     +  + QL 
Sbjct: 172 NKDRYVPFGRYAQRALQTYLKDGRQTLMNKRDVQHRFVFVNQYGRPITARGIEYILDQLI 231

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +   L  +   H LRHSFATH+L +G DLR++Q +LGH  LSTTQIYT+V   +  +  M
Sbjct: 232 KQTSLIANIHPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYM 291

Query: 312 EIYDQTH 318
           + Y + +
Sbjct: 292 KYYPKHN 298


>gi|162148139|ref|YP_001602600.1| site-specific tyrosine recombinase XerC [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786716|emb|CAP56299.1| Tyrosine recombinase xerC [Gluconacetobacter diazotrophicus PAl 5]
          Length = 324

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 114/324 (35%), Positives = 169/324 (52%), Gaps = 27/324 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           R  +L  +  ER  S LT+ +Y  D  +FL F+  +    + +  + +LS  ++RA+++ 
Sbjct: 7   RDAFLDWMRDERRASPLTIAAYRGDLDRFLDFIGAHVGGTVDLAVLDRLSLADLRAWLAF 66

Query: 78  RRTQK--IGDRSLKRS-------------LSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
              Q   +  R   RS             +S ++SF +YL +R   T      +   +  
Sbjct: 67  EHAQGHALAQRDRGRSSTPDRAARTRARRVSAMRSFYRYLARRHGVTNPAPGLLAAPRTK 126

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           + LPR L+E QAL + D   +     T    AR++A+  LLYGCGLRISEAL L  +++ 
Sbjct: 127 SPLPRPLSEAQALDVPDG--VGDLAVTPLGQARDAALFLLLYGCGLRISEALGLDVRDLD 184

Query: 183 DD---QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
                  TL ++GKG + R+VP+LP+V + + ++    P  L      PLF G+RG  L 
Sbjct: 185 HALSAGGTLLVRGKGGRERLVPILPAVARVLTDWRARHPAPL---PDAPLFPGVRGGRLQ 241

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           P V QR +R  R   GLP   T H LRHSFATHL+  G DLR+IQ +LGH  LSTTQ YT
Sbjct: 242 PAVAQRAMRAWRDMAGLPDHATPHALRHSFATHLMEGGADLRTIQELLGHASLSTTQRYT 301

Query: 300 NVNSKNGGDWMMEIYDQTHPSITQ 323
             +       +ME++ + HP   +
Sbjct: 302 LADEAR----LMEVWTRAHPRAAR 321


>gi|88813056|ref|ZP_01128298.1| Tyrosine recombinase XerC [Nitrococcus mobilis Nb-231]
 gi|88789689|gb|EAR20814.1| Tyrosine recombinase XerC [Nitrococcus mobilis Nb-231]
          Length = 301

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 96/310 (30%), Positives = 160/310 (51%), Gaps = 15/310 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +  +L  ER L++LT Q Y  D      +        + +    Q++ T IR FI+ 
Sbjct: 5   LERFDAHLRTERRLARLTRQHYRRDLETLAGYCGA-----LGLSGWEQVNATHIRRFIAW 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R    +  RSL+R LS I++  +YL +  +T  +    +R  K    LP AL+  +   L
Sbjct: 60  RHRSGLAGRSLQRMLSSIRTLYRYLIREGVTRSNPGTGVRAPKTRQRLPEALDVDETAHL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D         +  +  R+ A+  LLY CGLR++E   L+   +   ++ LR+ GKG K+
Sbjct: 120 LDE-----PPASDPLRVRDVAMFELLYSCGLRLAELAGLSTDAVTGREAELRVTGKGCKM 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VP+    R A+L +  L P  L  + +  LF    G+ L+    Q  + +L +  GL 
Sbjct: 175 RVVPIGRQARCALLRWLTLRPG-LARSDEPALFVARHGRRLSHRSIQVRLERLAQRRGLH 233

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRHSFA+HLL + GDLR++Q +LGH  + TTQ+YT+++ ++    + ++YD  
Sbjct: 234 RRVHPHMLRHSFASHLLESSGDLRAVQELLGHAHIGTTQVYTHLDFQH----LTKVYDAA 289

Query: 318 HPSITQKDKK 327
           HP   +K ++
Sbjct: 290 HPRARRKPRE 299


>gi|167585124|ref|ZP_02377512.1| site-specific tyrosine recombinase XerC [Burkholderia ubonensis Bu]
          Length = 306

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 89/321 (27%), Positives = 161/321 (50%), Gaps = 29/321 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                +L NL+  R LS  TL++Y  +  +     A         + +  LS  ++R  +
Sbjct: 4   DPIAAYLSNLKHVRQLSDHTLRAYTHELGELKKLAAG--------RPLEALSAVDMRGAV 55

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++     +  RS+   LS  ++F ++L +R     + +  +R  K++ +LP+AL+   A 
Sbjct: 56  ARAHAAGLSARSISHRLSAWRAFYRWLAQRIEMPANPVAAVRAPKRAKTLPKALSVDDAT 115

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-----------MDD 184
            L+D  L  T+        R+ AIL LLY  GLR++E + L  +                
Sbjct: 116 ALMDAPLPGTTE-----GLRDHAILELLYSSGLRLAELIGLDVRYAQADGYRSAGWLDLA 170

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           ++ + ++GKG+K R VP+      A+  +  +    +  +   PLF  +RG  ++PGV +
Sbjct: 171 EAEVTVRGKGNKERKVPVGRKAIDALNAWLAVRGEFVKHDPH-PLFLSVRGNRMSPGVVR 229

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +++     G+P     H LRHSFATH+L + GDLR++Q +LGH  ++ TQ+YT+++ +
Sbjct: 230 ERVKRAALAAGIPAHVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYTSLDFQ 289

Query: 305 NGGDWMMEIYDQTHPSITQKD 325
           +    + +IYD  HP   ++D
Sbjct: 290 H----LAKIYDSAHPRAKKRD 306


>gi|270290225|ref|ZP_06196450.1| tyrosine recombinase XerC [Pediococcus acidilactici 7_4]
 gi|304384961|ref|ZP_07367307.1| tyrosine recombinase XerC [Pediococcus acidilactici DSM 20284]
 gi|270281006|gb|EFA26839.1| tyrosine recombinase XerC [Pediococcus acidilactici 7_4]
 gi|304329155|gb|EFL96375.1| tyrosine recombinase XerC [Pediococcus acidilactici DSM 20284]
          Length = 301

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 88/312 (28%), Positives = 151/312 (48%), Gaps = 15/312 (4%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +   + + + L +ER  S  T+ +Y  D ++F  FL     +      +  +   +   F
Sbjct: 1   MDWIEQFKRYLTVERQYSDKTVTAYLEDLQEFQKFLQTTGNKP----ELLAVDRFDANVF 56

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +S    Q +   S+ R +S +++F ++L K  +  ++    ++  K ++ LPR   EK+ 
Sbjct: 57  MSYLFDQNLKRTSISRKVSSLRAFYRFLIKNDVIAKNPFEFVQLKKHADHLPRFFYEKEM 116

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L D V      +   +  RN+A+L +LYG G+R+SE  +L   +I     T+ + GKG
Sbjct: 117 NQLFDTVY----QDQGPLHLRNAALLEVLYGTGMRVSECTNLRWTDIDFSMQTILVLGKG 172

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           +K R VP     + A+ +Y+      L          +F    G+P+     +  + Q+ 
Sbjct: 173 NKERYVPFGRYAKHALEDYHQNEWTSLLEKYHQTHQYVFVNHYGQPITVAGVEYVLNQII 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +   L      H LRHSFAT +L+NG DLR++Q +LGH  LSTTQIYT+V  +     + 
Sbjct: 233 KNSSLNGKIHPHMLRHSFATAMLNNGADLRTVQELLGHASLSTTQIYTHVTKE----KLQ 288

Query: 312 EIYDQTHPSITQ 323
           E Y +  P  T+
Sbjct: 289 ESYRKFFPRSTK 300


>gi|218961949|ref|YP_001741724.1| site-specific recombinase, phage integrase family [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730606|emb|CAO81518.1| site-specific recombinase, phage integrase family [Candidatus
           Cloacamonas acidaminovorans]
          Length = 298

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 96/310 (30%), Positives = 148/310 (47%), Gaps = 12/310 (3%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + K   ++   L +E G S  T+ +Y+ D  QF  F+  Y E       I+ ++   IR 
Sbjct: 1   MEKYIADFCNYLALE-GKSPRTITAYKLDLEQFHSFIQRYFEN--GEVDIKGITVLNIRD 57

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F      +   +RSL R  + + SF +Y K+      + +  ++  K    LP+   E++
Sbjct: 58  FFRFLNEKPDCNRSLARKSAALNSFFRYCKRSGFIQNNPMEKIKRPKYEVPLPKCFTEEE 117

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
             TL+                RN AIL  LY  GLRISE   +  Q+I   +  +R+ GK
Sbjct: 118 VRTLL-----SIPDTDSPFGIRNKAILETLYSSGLRISELAGIRLQDIDLKRGLVRVTGK 172

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K RIVPL     +AI  Y  + P  +  N    LF    GK  +       +++    
Sbjct: 173 GNKQRIVPLGSYAIEAINNYLKVRPQFMRENSPDLLFLTKSGKAFDTKQLDIILKRYFEL 232

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +      + H+LRHSFATHLLS G DLR+IQ +LGH  LSTT+ YT+++ ++    + E 
Sbjct: 233 VAKAKGYSPHSLRHSFATHLLSRGADLRAIQELLGHSLLSTTETYTHISLED----IKEA 288

Query: 314 YDQTHPSITQ 323
           Y + HP   +
Sbjct: 289 YKKGHPRSKE 298


>gi|193212222|ref|YP_001998175.1| integrase family protein [Chlorobaculum parvum NCIB 8327]
 gi|254799328|sp|B3QM22|XERC_CHLP8 RecName: Full=Tyrosine recombinase xerC
 gi|193085699|gb|ACF10975.1| integrase family protein [Chlorobaculum parvum NCIB 8327]
          Length = 336

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 91/332 (27%), Positives = 158/332 (47%), Gaps = 21/332 (6%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQTIRQ 65
           PE       +  + +L +L+  R +S  T+ +Y CD  Q+  FL      +++      +
Sbjct: 9   PEDHEVARCRWLEPFLSHLQAARNVSPKTVTAYRCDLLQYFSFLKEQAGLDRLEAVEPER 68

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +   ++R F+     + I  RS+ R L+ +KSF ++L +    + S +  +   +    +
Sbjct: 69  VEVADVRLFMGHLLDKGIQPRSIARKLASVKSFYRFLLETGRISSSPLSLVVTPRLDKKV 128

Query: 126 PRALNEKQALTLVDNVLLHTSHE-----------TKWIDARNSAILYLLYGCGLRISEAL 174
           PR ++E++A  L         +             ++   R+ A+L +LYGCGLR+SE +
Sbjct: 129 PRFVSEEEARQLFRRFESQEDNAALQGDGKKAEVRQFETFRDRAVLEVLYGCGLRLSELI 188

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPL 229
           +L   ++      L++ GKG K RIVPL     +A+ +Y+                   +
Sbjct: 189 ALERADVDLVHGFLKVTGKGRKQRIVPLGEPAVEALRKYFEVRRNFFRIPLERTGESSRV 248

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F   RG+ L P + QR  ++    +        H LRHSFATH+L+ G DL+S+  +LGH
Sbjct: 249 FVTSRGRQLYPMLVQRMTKRYLTPVSESEKKNPHILRHSFATHMLNGGADLKSVSEMLGH 308

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
             L+TT++YT+V        + EIYD+ HP  
Sbjct: 309 SSLTTTELYTHVTFSR----LKEIYDKAHPGA 336


>gi|167835019|ref|ZP_02461902.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis
           MSMB43]
          Length = 306

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 85/321 (26%), Positives = 160/321 (49%), Gaps = 29/321 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
               ++L NL   R LS  TL++Y  +  +         ++    + +  L+  ++R  +
Sbjct: 4   DPIADYLSNLRHVRKLSDHTLRAYAHELDEL--------KKLANGRPLESLTAVDMRGAV 55

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++     +  RS+   LS  ++F ++  +      + +  +R  K + +LP+AL+   A 
Sbjct: 56  ARAHAGGLSARSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKHAKTLPKALSVDDAA 115

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-----------MDD 184
            L+D     T+      + R+ AIL L Y  GLR++E + L  +                
Sbjct: 116 ALMDAPTAGTAE-----NLRDHAILELFYSSGLRLAELIGLDIEYAKDGDYRSEGWLDLA 170

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           ++ + ++GKGDK R VP+      A+  +  +    +  + + PLF  +RG  ++PGV +
Sbjct: 171 EAEVTVRGKGDKERKVPVGRKAIDALNAWLAVRGEFVKRDPR-PLFLSVRGNRMSPGVVR 229

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  +S TQ+YT+++ +
Sbjct: 230 ERVKRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQ 289

Query: 305 NGGDWMMEIYDQTHPSITQKD 325
           +    + +IYD  HP   ++D
Sbjct: 290 H----LAKIYDSAHPRAKKRD 306


>gi|299533133|ref|ZP_07046518.1| phage integrase [Comamonas testosteroni S44]
 gi|298718910|gb|EFI59882.1| phage integrase [Comamonas testosteroni S44]
          Length = 348

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 92/342 (26%), Positives = 161/342 (47%), Gaps = 32/342 (9%)

Query: 1   MEGNNLP--EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI 58
           M+    P  E    +L +   ++L+++ +++ L++ T   Y  D  +   F     +E +
Sbjct: 1   MQEREQPSFEEQYAQLPEVVHSYLEHVRVQKRLAERTHTLYALDLIKLQSFAQAAAQELL 60

Query: 59  TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
           T+Q       + IR F ++        R +   LSG +SF ++  +R++   + +  +R 
Sbjct: 61  TLQ------PSHIRRFAAQMHGAGRSARGIALILSGWRSFFRWAAQRELVPFNPVEGVRG 114

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            K +  LP+AL    A+ L             W++AR+ A+  LLY CGLR++E + L  
Sbjct: 115 PKAAKPLPKALAVDDAVQLAS---FQNPEADPWMEARDVAMTELLYSCGLRVAELVGLDL 171

Query: 179 Q-----------NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF------DL 221
           +            I  +     +QGKG K RIVP+      A+  +  L          L
Sbjct: 172 RPDQQSRHEGRGWIDLEAGDAHVQGKGSKRRIVPVGRMAILALQRWLALRSCALVGAAQL 231

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
               +  LF G RG+ L+       ++Q  +  GL      H LRHSFA+H+L + GDLR
Sbjct: 232 KAQDEAALFVGRRGERLSAQSVWSRLKQRGQQAGLATGVHPHVLRHSFASHMLQSSGDLR 291

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
           ++Q +LGH  ++TTQIYT ++ ++    + + Y++ HP   +
Sbjct: 292 AVQELLGHSSIATTQIYTRLDFQH----LAQAYEKAHPRAQR 329


>gi|209521010|ref|ZP_03269744.1| tyrosine recombinase XerD [Burkholderia sp. H160]
 gi|209498544|gb|EDZ98665.1| tyrosine recombinase XerD [Burkholderia sp. H160]
          Length = 318

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 139/304 (45%), Gaps = 17/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +   L +E GLS+ TL +Y  D R F  +LA          ++   S  ++ A+ + 
Sbjct: 30  IDAFCDALWLEHGLSRNTLDAYRRDLRLFCEWLAHTRN-----ASLDTASEADLTAYSAA 84

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R+  K    S  R LS  + +  +  +         L +R+ K+    P  L+E Q   L
Sbjct: 85  RQQDK--ATSANRRLSVFRRYYAWAVREHRAAADPTLRIRSAKQPPRFPSTLSEAQVEAL 142

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L        +  R+  +L L+Y  GLR++E ++L    +  ++  +R+ GKG K 
Sbjct: 143 -----LGAPDIDTPLGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVTGKGSKE 197

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R++P        I  Y     P  L       LF   R + +    F   I++  +  G+
Sbjct: 198 RLIPFGEEAHAWIERYLREARPALLGPRAADALFVTARAEGMTRQQFWNIIKRHAQVAGV 257

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++ Q
Sbjct: 258 HAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARER----LKSLHAQ 313

Query: 317 THPS 320
            HP 
Sbjct: 314 HHPR 317


>gi|329905896|ref|ZP_08274277.1| site-specific tyrosine recombinase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547427|gb|EGF32250.1| site-specific tyrosine recombinase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 304

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 81/312 (25%), Positives = 148/312 (47%), Gaps = 16/312 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++ +  +    +   L +E GL+K +L++Y  D   F ++LA  ++       +  ++  
Sbjct: 7   LNADSRQHIDTFCDTLWLEDGLAKNSLEAYRRDLTAFALWLAQASQ-----TGLLAVTGA 61

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +I A+ + R        +  R L+ +K F +   + K  ++   L + + K+    P+ L
Sbjct: 62  DINAYFAARHDAS-KATTANRRLAVLKRFYQLALRNKQISDDPCLKLHSAKQPPRFPKTL 120

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +E     L+          +  +  R+  +L L+Y  GLR++E + L    +  +   +R
Sbjct: 121 SEANVEALL-----AAPDVSTPLGLRDRTMLELMYASGLRVTELVLLKSIELSLNDGVVR 175

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           + GKG+K R+VP     R  I  Y        L+  +   LF   RG P+   +F   ++
Sbjct: 176 VTGKGNKTRLVPFGEEARSWIERYLLEARAQILDGQMDDALFVTARGGPMTRQMFWVVVK 235

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +      +    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +    
Sbjct: 236 KCAVRADIHAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER--- 292

Query: 309 WMMEIYDQTHPS 320
            +  ++   HP 
Sbjct: 293 -LKVLHAAHHPR 303


>gi|257896182|ref|ZP_05675835.1| phage integrase [Enterococcus faecium Com12]
 gi|293377182|ref|ZP_06623390.1| tyrosine recombinase XerC [Enterococcus faecium PC4.1]
 gi|257832747|gb|EEV59168.1| phage integrase [Enterococcus faecium Com12]
 gi|292644202|gb|EFF62304.1| tyrosine recombinase XerC [Enterococcus faecium PC4.1]
          Length = 301

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 99/308 (32%), Positives = 153/308 (49%), Gaps = 19/308 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L+ L +ERG S+ T ++YE D   F  FL     E+     + +  Y  +R ++S  
Sbjct: 8   QKFLRYLIVERGYSEKTKEAYEEDILHFKHFL-----EESGDADLLKAEYFTVRVYLSAL 62

Query: 79  RTQK--IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              +      S+ R ++ ++SF +YL K ++  E+    +   KK+  LPR   E +   
Sbjct: 63  ADHRPSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQA 122

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L D+V          +D RN A+L +LYG G+R+SE  +L   +I  D   + I GKG+K
Sbjct: 123 LFDSV-----AGDSPLDLRNRALLEVLYGSGIRLSECSNLLVSDIDFDSEVMLIHGKGNK 177

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            R  PL    + A+ EY+      L          +F    GKP+ P   +  + Q+ + 
Sbjct: 178 ERYAPLGSFAQDALQEYFTEGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQIIKK 237

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRH+FATHLL+NG DLR++Q +LGH  LSTTQIY +V  ++    + + 
Sbjct: 238 SSLDSDIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKES----LQKN 293

Query: 314 YDQTHPSI 321
           Y   HP  
Sbjct: 294 YRSFHPRA 301


>gi|78189718|ref|YP_380056.1| phage/XerD family site-specific recombinase [Chlorobium
           chlorochromatii CaD3]
 gi|78171917|gb|ABB29013.1| site-specific recombinase, phage/XerD family [Chlorobium
           chlorochromatii CaD3]
          Length = 338

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 94/341 (27%), Positives = 168/341 (49%), Gaps = 25/341 (7%)

Query: 1   MEGNNLPEIVSFELLKE----RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE 56
           M  + L + +   LL+E     Q +L+++   RGLS  T+ +Y  D  QF  FLA + E 
Sbjct: 3   MSNSALHQPL-PRLLQESALPIQAFLEHVAQRRGLSPNTVVAYRGDLIQFFTFLAQHLEL 61

Query: 57  -KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
             +       ++  ++R F+     Q +  RS+ R L  +K F +YL++  I T     +
Sbjct: 62  LDLRAFQPESVTPMDVRLFMGFLLEQGVKQRSIARKLVAVKVFYRYLQEHGIITTCLFSS 121

Query: 116 MRNLKKSNSLPRALNEKQALTLVD-----------NVLLHTSHETKWIDARNSAILYLLY 164
           + + K    +P  L E+Q   L +           +     S    +  AR+ +IL LLY
Sbjct: 122 LGSPKFPQRVPNFLTEEQTSKLFELLETVPNGAVSDSQPANSALHAFTAARDCSILELLY 181

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP----FD 220
             GLR+SE ++L    +  ++  +++ GKG++ RIVP+  +  +A+ +Y+++       +
Sbjct: 182 SSGLRVSELVNLRMDELDVERGYVKVHGKGNRERIVPVGAAAIEALKKYFEVRRNFFRMN 241

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
             +     +F   +G  + P + QR   +    +        H LRH+FATHLL++G DL
Sbjct: 242 KEVEPFTSVFVTQKGAKIYPMLVQRVTARHLSLVTEQKKKNPHLLRHTFATHLLNSGADL 301

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            S+  +LGH  L+TT++YT+V  +     + E+Y + HP+ 
Sbjct: 302 ESVSEMLGHSNLATTELYTHVTFER----LKEVYRKAHPNA 338


>gi|260559074|ref|ZP_05831260.1| phage integrase [Enterococcus faecium C68]
 gi|260074831|gb|EEW63147.1| phage integrase [Enterococcus faecium C68]
          Length = 301

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 100/308 (32%), Positives = 153/308 (49%), Gaps = 19/308 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L+ L +ERG S+ T ++YE D   F  FL     E+     + +  Y  +R ++S  
Sbjct: 8   QKFLRYLIVERGYSEKTKEAYEEDILHFKHFL-----EESGDADLLKAEYFTVRVYLSAL 62

Query: 79  --RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                     S+ R ++ ++SF +YL K ++  E+    +   KK+  LPR   E +   
Sbjct: 63  ADHRSSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQA 122

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L D+V          +D RN A+L +LYG G+R+SE  SL+  +I  D   + I GKG+K
Sbjct: 123 LFDSV-----AGDSPLDLRNRALLEVLYGSGIRLSECSSLSVSDIDFDSEVMLIHGKGNK 177

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            R  PL    + A+ EY+      L          +F    GKP+ P   +  + Q+ + 
Sbjct: 178 ERYAPLGSFAQDALQEYFREGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQMIKK 237

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRH+FATHLL+NG DLR++Q +LGH  LSTTQIY +V  ++    + + 
Sbjct: 238 SSLDSDIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKES----LQKN 293

Query: 314 YDQTHPSI 321
           Y   HP  
Sbjct: 294 YRSFHPRA 301


>gi|118586872|ref|ZP_01544306.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163]
 gi|118432704|gb|EAV39436.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163]
          Length = 302

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 151/304 (49%), Gaps = 16/304 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++ + L  ERGL + +++SY+ D  +F    A+  +E I +  + + +   I  +++  +
Sbjct: 14  DYTRYLRTERGLLENSIKSYKQDLSEF---GAYIQKENILLVKVDRFT---ILDWLNYLQ 67

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                + S+   +S ++ F  YL   +      +L +   KK++ LP+ L   +   ++ 
Sbjct: 68  NSGKSNNSIVHMVSSLRKFFAYLSDDQQIQIDPMLKVTTPKKNSHLPQVLTATEIEAVL- 126

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                    +  +  RN A+L  +Y  G R+SE  +L   ++ D+   +   GKG K RI
Sbjct: 127 ----AVPDISTTLGLRNRALLETMYATGFRVSEICNLKLADLHDELGLITTIGKGQKQRI 182

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+       I +Y+      L  + + P LF    G  ++     + ++++    G+  
Sbjct: 183 VPIGEMSLLYISKYFKESRPILLKDKESPYLFLNDHGHRISRQGIFKLVKEIAIKAGIDK 242

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HTLRHSFAT+LL NG DLR +Q +LGH  +STTQIYT+V+ K+    + E Y++ H
Sbjct: 243 DISPHTLRHSFATNLLENGADLRIVQELLGHSDISTTQIYTHVSQKH----IREQYNRFH 298

Query: 319 PSIT 322
           P   
Sbjct: 299 PRAK 302


>gi|317401433|gb|EFV82066.1| integrase/recombinase [Achromobacter xylosoxidans C54]
          Length = 324

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 97/320 (30%), Positives = 155/320 (48%), Gaps = 27/320 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            WL++LE  R  S  TL  Y  +   FL  LA   +       + +L    IR F+++  
Sbjct: 16  AWLRHLESNRRYSPHTLDGYRRELG-FLHALAERAK-----LPLERLGNGHIRQFVARLH 69

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q  G RSL R+L+  + F ++         + +  +R  K   SLP+AL+ +Q   L+D
Sbjct: 70  AQGRGPRSLARTLAAWRGFYQWWAPAIGLAGNPVAGVRAPKAPRSLPKALSVEQTQALLD 129

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-----------MDDQSTL 188
                 +  T+    R+ A+  LLY  GLR+SE + L  +               D++ +
Sbjct: 130 RAPAKVA--TEPAALRDQAMFELLYSSGLRLSELVGLDLRYARSADYESRGWLNLDEAEV 187

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCP----FDLNLNIQLPLFRGIRGKPLNPGVFQ 244
            + GKG K R VP+  +   A+  + +  P       + +    LF G RG+ ++P V Q
Sbjct: 188 IVLGKGGKRRSVPVGQAAVAALQRWIEARPQLAPPAASPSDAAALFLGARGRRISPRVVQ 247

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +  + +  GLP     H LRHSFA+H+L +  DLR++Q +LGH  +STTQIYT ++ +
Sbjct: 248 LQLAHVAQAAGLPTHVHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQIYTRLDFQ 307

Query: 305 NGGDWMMEIYDQTHPSITQK 324
           +    +   YDQ HP   +K
Sbjct: 308 H----LARAYDQAHPRAGRK 323


>gi|193214435|ref|YP_001995634.1| integrase family protein [Chloroherpeton thalassium ATCC 35110]
 gi|193087912|gb|ACF13187.1| integrase family protein [Chloroherpeton thalassium ATCC 35110]
          Length = 336

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 99/325 (30%), Positives = 156/325 (48%), Gaps = 27/325 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ-TIRQLSYTEIRAFISKR 78
            +L+ L  ER +S  T+ +Y  D  QFL FL    E   +   ++  +  + IR F+ + 
Sbjct: 16  AFLKYLANERNMSAYTVTAYRKDLSQFLEFLKKEFELPSSQDISLADVETSTIRLFLGEL 75

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  +S+ R L+ +KSF K+L        S   N+   K   +LP  LNE Q  TL 
Sbjct: 76  LDAGYQSKSIGRKLASVKSFFKFLVYINHLPASPAANVTTPKAKKTLPTFLNETQTQTLF 135

Query: 139 DNVLLHTSH-----------------ETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           D +L H +                  E  +   R+ AIL + Y CGLR++E + L    +
Sbjct: 136 DEILDHFNEAFYHDNRAKKHEKVNTLEWDFRYNRDRAILEMFYSCGLRLAELIGLNIMEL 195

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGK 236
                 +++ GKG K RI+PL  S +K +  Y             N+  +  +F   +GK
Sbjct: 196 DFQNGFVKVLGKGRKQRIIPLGESAQKTLKNYLEIKKKFFEMKRSNVLEREAVFVTEKGK 255

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            + P + QR +++    +      + H LRH+FATHLL+NG DLRS+  +LGH  LSTT+
Sbjct: 256 RVYPVLVQRLVKKYLSPVTEQKKKSPHVLRHTFATHLLNNGADLRSVSEMLGHSNLSTTE 315

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSI 321
           IYT+++ +     + ++Y Q HP  
Sbjct: 316 IYTHISFER----LKQVYQQAHPKA 336


>gi|94969887|ref|YP_591935.1| tyrosine recombinase XerC subunit [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551937|gb|ABF41861.1| tyrosine recombinase XerC subunit [Candidatus Koribacter versatilis
           Ellin345]
          Length = 300

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 87/306 (28%), Positives = 146/306 (47%), Gaps = 20/306 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L++L+ E+  S  T+++Y  D  +F  FL               + +  IR F+S   
Sbjct: 12  QFLRSLK-EKNSSVHTIKAYTTDLEEFSAFL--------GPAKWDDIDHVRIRGFLSHLY 62

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +   S+ R+L+ ++S  K+L +     ++    +   K    LPR    ++  T++D
Sbjct: 63  DKGLSKPSVARALAALRSLYKWLAREGFVEQNPAALVATPKLPKKLPRVPTMEELNTVMD 122

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             +   +   +     ++ I  LLYGCG+R SE   +   +I      + I+GKG K R 
Sbjct: 123 AEMPEAASFPER----DALIFELLYGCGIRNSELTGINLDDIRWSNEAILIRGKGKKERF 178

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRG-KPLNPGVFQRYIRQLRRYLGL 256
           VP   +   A   Y       L    +    L   +R  + L      R ++++    GL
Sbjct: 179 VPFGDAAAVAAKVYLKKRQDILAERHKSTNALLINLRDVQRLTSRSVGRIVKKIAVARGL 238

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           P     HTLRH+F THLL  G DLR+IQ +LGH RL+TTQ YT +++++    ++E+YD+
Sbjct: 239 PADVHPHTLRHAFGTHLLEEGADLRAIQELLGHERLATTQRYTQLSTRH----VLEVYDK 294

Query: 317 THPSIT 322
           THP   
Sbjct: 295 THPRAK 300


>gi|90407171|ref|ZP_01215359.1| tyrosine recombinase [Psychromonas sp. CNPT3]
 gi|90311747|gb|EAS39844.1| tyrosine recombinase [Psychromonas sp. CNPT3]
          Length = 298

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 92/308 (29%), Positives = 149/308 (48%), Gaps = 19/308 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L +L +ERGLS+ TL SY  D      FL          + + + SY ++  + S 
Sbjct: 6   IDQFLDSLWLERGLSQNTLASYRFDLCLVQNFLEANN------KVLAEASYQDLCDYFSF 59

Query: 78  RRTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           R    I   + S  R +S ++ + ++L + K+  +     +++ K    LP++L+E +  
Sbjct: 60  RLYSDIAYKNSSTARLMSALRRYYQFLCREKLRDDDPSAKLQSPKTLKPLPKSLSESEV- 118

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
               + LL     +  +  R+ A+L LLY  GLR+SE + L  Q +   Q  +R+ GKG+
Sbjct: 119 ----DGLLSAPDLSDSVQFRDKAMLELLYATGLRVSELVGLQMQELNLQQGVVRVTGKGE 174

Query: 196 KIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K R+VPL       +  Y + + P  L       LF   RG  +    F   I+      
Sbjct: 175 KTRLVPLGEEANYWVDRYIEEVRPELLKGRSCDILFPSRRGSQMVRQTFWHRIKYYALRC 234

Query: 255 GLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            +  +  + H LRH+FATHLL+ G DLR +Q +LGH  LS+TQIYT++      D + E+
Sbjct: 235 NIDKTLISPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSSTQIYTHIAQ----DRLKEL 290

Query: 314 YDQTHPSI 321
           +   HP  
Sbjct: 291 HKMHHPRA 298


>gi|69246761|ref|ZP_00604109.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus
           faecium DO]
 gi|257878024|ref|ZP_05657677.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257881190|ref|ZP_05660843.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257884853|ref|ZP_05664506.1| phage integrase [Enterococcus faecium 1,231,501]
 gi|257889777|ref|ZP_05669430.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|257892286|ref|ZP_05671939.1| phage integrase [Enterococcus faecium 1,231,408]
 gi|261207608|ref|ZP_05922293.1| phage integrase [Enterococcus faecium TC 6]
 gi|289565120|ref|ZP_06445573.1| tyrosine recombinase XerC [Enterococcus faecium D344SRF]
 gi|293556768|ref|ZP_06675331.1| tyrosine recombinase XerC [Enterococcus faecium E1039]
 gi|293563426|ref|ZP_06677875.1| tyrosine recombinase XerC [Enterococcus faecium E1162]
 gi|293568161|ref|ZP_06679497.1| tyrosine recombinase XerC [Enterococcus faecium E1071]
 gi|294614817|ref|ZP_06694712.1| tyrosine recombinase XerC [Enterococcus faecium E1636]
 gi|294617496|ref|ZP_06697127.1| tyrosine recombinase XerC [Enterococcus faecium E1679]
 gi|294622307|ref|ZP_06701350.1| tyrosine recombinase XerC [Enterococcus faecium U0317]
 gi|68195115|gb|EAN09575.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus
           faecium DO]
 gi|257812252|gb|EEV41010.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257816848|gb|EEV44176.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257820691|gb|EEV47839.1| phage integrase [Enterococcus faecium 1,231,501]
 gi|257826137|gb|EEV52763.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|257828665|gb|EEV55272.1| phage integrase [Enterococcus faecium 1,231,408]
 gi|260077991|gb|EEW65697.1| phage integrase [Enterococcus faecium TC 6]
 gi|289163127|gb|EFD10974.1| tyrosine recombinase XerC [Enterococcus faecium D344SRF]
 gi|291589151|gb|EFF20963.1| tyrosine recombinase XerC [Enterococcus faecium E1071]
 gi|291592279|gb|EFF23893.1| tyrosine recombinase XerC [Enterococcus faecium E1636]
 gi|291596236|gb|EFF27498.1| tyrosine recombinase XerC [Enterococcus faecium E1679]
 gi|291598199|gb|EFF29297.1| tyrosine recombinase XerC [Enterococcus faecium U0317]
 gi|291601100|gb|EFF31389.1| tyrosine recombinase XerC [Enterococcus faecium E1039]
 gi|291604687|gb|EFF34172.1| tyrosine recombinase XerC [Enterococcus faecium E1162]
          Length = 301

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 100/308 (32%), Positives = 154/308 (50%), Gaps = 19/308 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L+ L +ERG S+ T ++YE D   F  FL     E+     + +  Y  +R ++S  
Sbjct: 8   QKFLRYLIVERGYSEKTKEAYEEDILHFKHFL-----EESGDADLLKAEYFTVRVYLSAL 62

Query: 79  RTQK--IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              +      S+ R ++ ++SF +YL K ++  E+    +   KK+  LPR   E +   
Sbjct: 63  ADHRPSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQA 122

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L D+V          +D RN A+L +LYG G+R+SE  SL+  +I  D   + I GKG+K
Sbjct: 123 LFDSV-----AGDSPLDLRNRALLEVLYGSGIRLSECSSLSVSDIDFDSEVMLIHGKGNK 177

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            R  PL    + A+ EY+      L          +F    GKP+ P   +  + Q+ + 
Sbjct: 178 ERYAPLGSFAQDALQEYFREGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQMIKK 237

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRH+FATHLL+NG DLR++Q +LGH  LSTTQIY +V  ++    + + 
Sbjct: 238 SSLDSDIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKES----LQKN 293

Query: 314 YDQTHPSI 321
           Y   HP  
Sbjct: 294 YRSFHPRA 301


>gi|311739716|ref|ZP_07713551.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311305532|gb|EFQ81600.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 305

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 82/309 (26%), Positives = 143/309 (46%), Gaps = 19/309 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ++ +  +++       RG ++ T++ Y  D R              ++ T  +     +R
Sbjct: 16  QMAEAIEDFADFQLHVRGRAEATVRGYRADLRDLAR----------SVPTFAEFDLNSLR 65

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            ++++  T+     +L R  +  K F  +  +           +   K    LP  L  +
Sbjct: 66  QWLAEAVTEGKSRSTLARRTAAAKGFSTWAVREGHLKRDVAARLVTPKVGRHLPTVLAPE 125

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           QA  L+ N +       +    R+SAIL LLY  G+R++E + L   +I   + TL + G
Sbjct: 126 QAGELMGNAVSA----DEVHFLRDSAILELLYASGMRVAELVRLDLGDIDFQRGTLHVTG 181

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG+K R+VP   +   A+ ++ D    ++       +F G RG  ++    +R + +  +
Sbjct: 182 KGNKQRVVPFGHAAEDALKQWIDKGRGEIASAETEAVFVGSRGGRIDQRQVRRIVEKAAK 241

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G     T H +RHS ATHLL  G DLR +Q +LGH  L+TTQIYT+V+++     +  
Sbjct: 242 VTG-AQGLTPHGVRHSAATHLLEGGADLRVVQELLGHSSLNTTQIYTHVSAQR----LQR 296

Query: 313 IYDQTHPSI 321
           +YDQ HP  
Sbjct: 297 VYDQAHPRA 305


>gi|121997992|ref|YP_001002779.1| tyrosine recombinase XerC [Halorhodospira halophila SL1]
 gi|121589397|gb|ABM61977.1| tyrosine recombinase XerC subunit [Halorhodospira halophila SL1]
          Length = 304

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 84/309 (27%), Positives = 156/309 (50%), Gaps = 16/309 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + ++L  ER L++ T + Y  D   F  F          + +   +++  +RA+++ 
Sbjct: 6   LERFDRHLASERRLAEPTRRRYRQDLDAFAAFCTDR-----GLASWAAVTHDVVRAWVAH 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +R + +  R+L R L+ ++SF ++L +           +R  +    LP  L+  +   L
Sbjct: 61  QRRRGLAGRTLGRQLAALRSFYRFLIREGAVAADPAAEVRPPQTRRRLPGTLDPDEVAGL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
           +D      +     + AR++A+  L+Y  GLR+SE + L   ++      +R+ +GKG K
Sbjct: 121 LDG-----ADPGDPLQARDAALYELIYSSGLRLSEVIGLNMMDLDRRDGLVRVLRGKGAK 175

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+VP+     +A+  +    P   +   +  +F G  G  L     QR +++L    G+
Sbjct: 176 DRVVPVGRQALRALDAWLRHRPAWASAE-ETAIFVGRHGGRLGARTVQRRLQRLAHLRGV 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRHSFATH+L + GDLR+IQ +LGH  +STTQ+YT+++ ++    + ++YDQ
Sbjct: 235 QRRVHPHMLRHSFATHMLESSGDLRAIQELLGHADISTTQVYTHLDFQH----LAQVYDQ 290

Query: 317 THPSITQKD 325
            HP   ++ 
Sbjct: 291 AHPRARRRK 299


>gi|34497827|ref|NP_902042.1| integrase/recombinase XerC [Chromobacterium violaceum ATCC 12472]
 gi|81655548|sp|Q7NVH1|XERC_CHRVO RecName: Full=Tyrosine recombinase xerC
 gi|34103683|gb|AAQ60044.1| integrase/recombinase XerC [Chromobacterium violaceum ATCC 12472]
          Length = 299

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 88/315 (27%), Positives = 153/315 (48%), Gaps = 21/315 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +  + ++++L +  G S  TL +Y  D       +          ++ R  +  E+R 
Sbjct: 1   MDEAIRRFIEHLAVA-GRSPHTLAAYRADIELLENMMQ--------AKSARDATAAELRK 51

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            ++K   Q +  RSL R LS  + F  +L++     ++    +   K+   LP+AL    
Sbjct: 52  ALAKLHAQGLSSRSLARRLSSWRQFYHWLQRNGEREDNPAAGLYAPKRDKLLPKALPVDG 111

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D +   +      +DAR+ AI  L+Y CGLR+SE ++L   ++    S LRI+GK
Sbjct: 112 TAALLDRIEGESE-----LDARDRAIFELVYSCGLRLSETVALNLDDVDFSDSLLRIRGK 166

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R+VP+       +  +       ++   +  LF G  G  L     ++ +R     
Sbjct: 167 GGKERLVPIGAEAMLRLRTWLGERSAGMD---EPALFLGRHGHRLGGRQVEKRLRDWAIK 223

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G       H LRHSFA+H+L + GDLR++Q +LGH  LS+TQIYT ++ ++    + ++
Sbjct: 224 TGAGQHVHPHMLRHSFASHMLQSSGDLRAVQELLGHANLSSTQIYTALDFQH----LAKV 279

Query: 314 YDQTHPSITQKDKKN 328
           YD  HP   ++ K +
Sbjct: 280 YDGAHPRARKRGKPD 294


>gi|282880564|ref|ZP_06289271.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1]
 gi|281305667|gb|EFA97720.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1]
          Length = 316

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 79/312 (25%), Positives = 150/312 (48%), Gaps = 16/312 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + + L++ER  S  TL +Y+ D R  L +              + +   ++  F  +
Sbjct: 12  VKAYTRYLKLERNYSPHTLDAYQHDLRWLLDYCENAGMHP------KDMQLKDLELFAGQ 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                IG  S  R LSG++SF ++L       +     + + +    LP  L+ ++    
Sbjct: 66  LHEHHIGPTSQARILSGVRSFYRFLVLDGRIEQDPTELLESPRLGEHLPEVLSTEEV--- 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
             +++ ++   +K    RN AI+ +L+ CGLR+SE ++L   N+  ++  +R+ GKG K 
Sbjct: 123 --DMIENSIDLSKPEGQRNKAIIEVLFSCGLRVSELVNLKLSNLYLEEGFVRVMGKGSKE 180

Query: 198 RIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+     + +  ++       +    +  +F   RGK L   +    +++     G+
Sbjct: 181 RLVPISSKAIRELQYWFVDRNLMKIQQGEEDYVFLNRRGKHLTRTMILIMLKRQAVAAGI 240

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HTLRHSFAT LL  G DLR+IQ++LGH  + TT++Y ++++      + E   Q
Sbjct: 241 TKTISPHTLRHSFATELLKGGADLRAIQAMLGHESIGTTELYMHIDT----TTLREEILQ 296

Query: 317 THPSITQKDKKN 328
            HP   ++   +
Sbjct: 297 HHPRNMKEKDDD 308


>gi|260461664|ref|ZP_05809911.1| tyrosine recombinase XerD [Mesorhizobium opportunistum WSM2075]
 gi|259032734|gb|EEW33998.1| tyrosine recombinase XerD [Mesorhizobium opportunistum WSM2075]
          Length = 305

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 86/312 (27%), Positives = 135/312 (43%), Gaps = 20/312 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+ +  ERG ++ TL SY  D       +                   +IRA++  
Sbjct: 7   IEAFLEMMSAERGAAENTLSSYRRDLEDASNEIDGGLAGAA---------AADIRAYLDD 57

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S  R LS I+ F K+L    +  +     + + KK   LP+ ++E     L
Sbjct: 58  IAARGFAPTSQARKLSAIRQFFKFLYAEGLRGDDPTGTLDSPKKGRPLPKTMSEADTGRL 117

Query: 138 VDNVLLHTS-----HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +D            H  +    R  A++ +LY  GLR+SE + L       D     ++G
Sbjct: 118 IDRAATEAGDAGLGHADRLAALRLHALVEVLYATGLRVSELVGLPVTVAQRDDRFFMVRG 177

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLR 251
           KGDK R+VPL    R A+  +               LF        L+  VF R ++ L 
Sbjct: 178 KGDKERMVPLSAKARAAMRTWLAARAGVPAFAESPFLFPAASDSGYLSRQVFARDLKGLA 237

Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              G+     + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V  +     +
Sbjct: 238 ARAGIASAKVSPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHVLEER----L 293

Query: 311 MEIYDQTHPSIT 322
           + + +  HP   
Sbjct: 294 VRLVNDHHPLAD 305


>gi|53724457|ref|YP_104732.1| site-specific tyrosine recombinase XerC [Burkholderia mallei ATCC
           23344]
 gi|67639320|ref|ZP_00438190.1| tyrosine recombinase XerC [Burkholderia mallei GB8 horse 4]
 gi|121598868|ref|YP_994214.1| site-specific tyrosine recombinase XerC [Burkholderia mallei SAVP1]
 gi|124383751|ref|YP_001028133.1| site-specific tyrosine recombinase XerC [Burkholderia mallei NCTC
           10229]
 gi|126441319|ref|YP_001057248.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           668]
 gi|126449297|ref|YP_001082944.1| site-specific tyrosine recombinase XerC [Burkholderia mallei NCTC
           10247]
 gi|167003305|ref|ZP_02269093.1| tyrosine recombinase XerC [Burkholderia mallei PRL-20]
 gi|167892320|ref|ZP_02479722.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           7894]
 gi|167900817|ref|ZP_02488022.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           NCTC 13177]
 gi|217424901|ref|ZP_03456397.1| tyrosine recombinase XerC [Burkholderia pseudomallei 576]
 gi|237810385|ref|YP_002894836.1| tyrosine recombinase XerC [Burkholderia pseudomallei MSHR346]
 gi|254175248|ref|ZP_04881909.1| tyrosine recombinase XerC [Burkholderia mallei ATCC 10399]
 gi|254201831|ref|ZP_04908195.1| tyrosine recombinase XerC [Burkholderia mallei FMH]
 gi|254207161|ref|ZP_04913512.1| tyrosine recombinase XerC [Burkholderia mallei JHU]
 gi|254359667|ref|ZP_04975938.1| tyrosine recombinase XerC [Burkholderia mallei 2002721280]
 gi|52427880|gb|AAU48473.1| integrase/recombinase XerC [Burkholderia mallei ATCC 23344]
 gi|121227678|gb|ABM50196.1| tyrosine recombinase XerC [Burkholderia mallei SAVP1]
 gi|124291771|gb|ABN01040.1| integrase/recombinase XerC [Burkholderia mallei NCTC 10229]
 gi|126220812|gb|ABN84318.1| tyrosine recombinase XerC [Burkholderia pseudomallei 668]
 gi|126242167|gb|ABO05260.1| tyrosine recombinase XerC [Burkholderia mallei NCTC 10247]
 gi|147747725|gb|EDK54801.1| tyrosine recombinase XerC [Burkholderia mallei FMH]
 gi|147752703|gb|EDK59769.1| tyrosine recombinase XerC [Burkholderia mallei JHU]
 gi|148028881|gb|EDK86813.1| tyrosine recombinase XerC [Burkholderia mallei 2002721280]
 gi|160696293|gb|EDP86263.1| tyrosine recombinase XerC [Burkholderia mallei ATCC 10399]
 gi|217391921|gb|EEC31947.1| tyrosine recombinase XerC [Burkholderia pseudomallei 576]
 gi|237506023|gb|ACQ98341.1| tyrosine recombinase XerC [Burkholderia pseudomallei MSHR346]
 gi|238519856|gb|EEP83322.1| tyrosine recombinase XerC [Burkholderia mallei GB8 horse 4]
 gi|243061115|gb|EES43301.1| tyrosine recombinase XerC [Burkholderia mallei PRL-20]
          Length = 310

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 83/328 (25%), Positives = 163/328 (49%), Gaps = 29/328 (8%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + +  +     ++L NL   R LS  TL++Y  +  +         +     + +  L+ 
Sbjct: 1   MTAKPIADPIVDYLSNLRHVRKLSDHTLRAYAHELDEL--------KRLANGRPLDSLTA 52

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++R+ +++     +  RS+   LS  ++F ++  +      + +  +R  K++ +LP+A
Sbjct: 53  VDMRSAVARAHAGGLSARSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKA 112

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI------- 181
           L+      L+D     T+   +     + AIL L Y  GLR++E + L  + +       
Sbjct: 113 LSVDDTAALMDAPTAGTAESLR-----DHAILELFYSSGLRLAELIGLDIEYVKDGAYRS 167

Query: 182 ----MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                  ++ + ++GKGDK R VP+      A+  +  +    +  + + PLF  +RG  
Sbjct: 168 AGWLDLAEAEVTVRGKGDKERKVPVGRKALDALHAWLAVRGEFVKHDPR-PLFLSVRGNR 226

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           ++PGV +  +++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  +S TQ+
Sbjct: 227 MSPGVVRERVKRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQV 286

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           YT+++ ++    + +IYD  HP   ++D
Sbjct: 287 YTSLDFQH----LAKIYDSAHPRAKKRD 310


>gi|300858733|ref|YP_003783716.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41]
 gi|300686187|gb|ADK29109.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41]
 gi|302206440|gb|ADL10782.1| Tyrosine recombinase XerC [Corynebacterium pseudotuberculosis C231]
 gi|302330996|gb|ADL21190.1| Tyrosine recombinase XerC [Corynebacterium pseudotuberculosis 1002]
 gi|308276682|gb|ADO26581.1| Tyrosine recombinase XerC [Corynebacterium pseudotuberculosis I19]
          Length = 293

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 83/311 (26%), Positives = 152/311 (48%), Gaps = 20/311 (6%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            ++     +++++LE+  G S  TL+ Y  D   F           +    ++  +   +
Sbjct: 2   AQMSALIDDFIEHLELVSGRSPATLKGYRSDLNTFA----------MRKPELKDFTLDNL 51

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           R ++ +   +     +L R ++  +S   +L K+          +   K    LP+ L  
Sbjct: 52  RDWLGEAVAEGKTRATLARRVAAARSMSSWLLKQGYIETDMAARLVAPKVGRHLPKVLAA 111

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            QA ++V+    H + +T+   AR+ A+L LLY  G+R+SE   +  ++I   + TL++ 
Sbjct: 112 GQAESVVE----HPASKTEAEFARDRAVLELLYATGIRVSELCGINLEDIDWRRKTLKVL 167

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           GKGDK R+VP   +   A+  + +     +     +  LF G+RG  L+P   +R +   
Sbjct: 168 GKGDKQRVVPFGQAACDALTHWIETGRPAMCKDQSEAALFLGVRGGRLDPRQVRRLVDAA 227

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  G+      H++RH+ ATH+L  G DLR +Q +LGH  L+TTQIYT+V+S+     +
Sbjct: 228 GKEAGIS-GLGPHSVRHTAATHMLDGGADLRIVQELLGHSSLNTTQIYTHVSSQR----L 282

Query: 311 MEIYDQTHPSI 321
            E + ++HP  
Sbjct: 283 KEAFKRSHPRA 293


>gi|296114058|ref|YP_003627996.1| tyrosine recombinase XerD [Moraxella catarrhalis RH4]
 gi|295921752|gb|ADG62103.1| tyrosine recombinase XerD [Moraxella catarrhalis RH4]
 gi|326559455|gb|EGE09878.1| tyrosine recombinase XerD [Moraxella catarrhalis 7169]
 gi|326561283|gb|EGE11642.1| tyrosine recombinase XerD [Moraxella catarrhalis 46P47B1]
 gi|326565171|gb|EGE15362.1| tyrosine recombinase XerD [Moraxella catarrhalis 103P14B1]
 gi|326567828|gb|EGE17932.1| tyrosine recombinase XerD [Moraxella catarrhalis 12P80B1]
 gi|326568170|gb|EGE18252.1| tyrosine recombinase XerD [Moraxella catarrhalis BC8]
 gi|326572813|gb|EGE22798.1| tyrosine recombinase XerD [Moraxella catarrhalis CO72]
 gi|326573743|gb|EGE23701.1| tyrosine recombinase XerD [Moraxella catarrhalis O35E]
 gi|326574632|gb|EGE24568.1| tyrosine recombinase XerD [Moraxella catarrhalis 101P30B1]
          Length = 307

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 86/324 (26%), Positives = 158/324 (48%), Gaps = 22/324 (6%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLE---IERGLSKLTLQSYECDTRQFLIFLAFYTEEK 57
           M  + +P   S  +  +   +L       + RGLS  T  +Y  D R  +         +
Sbjct: 1   MAKSTIPRADSAVIYDDDPEYLSEFRAAMLARGLSIATRNAYSQDVRLCI---------R 51

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           ++   +     +++R  +   +  K  +RS+ R+L+ +  F  +  +     ++   +++
Sbjct: 52  LSDTPVNLWQPSDVRNHLMCLKDAKKSERSIARALASLCQFFLWQIESGYREDNPCESIK 111

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             K   +LP+ L+E++  +L+D         +     R+ A+L +LY CGLR+SE  SL+
Sbjct: 112 TPKLGKTLPKTLSEQEVSSLLD-----APDISSVRGLRDKAMLEVLYACGLRVSELTSLS 166

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGK 236
            +++      L + GKG+K+R++PL      A+ EY  +    L        +F   +G 
Sbjct: 167 LEHLNLTAGWLSVTGKGNKMRLIPLGEYALSALNEYLAVRGSLLIGKKDCQAVFLTEQGG 226

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            +    F   I++     G+  + + HTLRH+FATHL+++G DLRS+Q +LGH  LSTTQ
Sbjct: 227 YMTRHNFWHLIKKYALMAGINTAISPHTLRHAFATHLVNHGADLRSVQLLLGHSDLSTTQ 286

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPS 320
           IYT+V +      +  ++ + HP 
Sbjct: 287 IYTHVATTR----LQNLHAKHHPR 306


>gi|288959341|ref|YP_003449682.1| integrase/recombinase [Azospirillum sp. B510]
 gi|288911649|dbj|BAI73138.1| integrase/recombinase [Azospirillum sp. B510]
          Length = 321

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 110/315 (34%), Positives = 168/315 (53%), Gaps = 10/315 (3%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSY 68
              ++     +W + LE E+ +S+ TL +Y  D  +FL FL  F+     ++  +  L  
Sbjct: 15  ARPDVQDALAHWRRWLESEKVVSRHTLSAYTADVAEFLRFLTEFHGGSPPSLNDLGDLKA 74

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            + RA++S+     +   S  R L+ +++  +++ +        +  +   K     PR 
Sbjct: 75  ADFRAWMSRLAMDGLVGASRARKLAAVRNLFRWMDRGGRLHNPAVATLATPKVKRPAPRP 134

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L   +              E  WI  R+ A+  LLYGCGLRISEAL L  ++      TL
Sbjct: 135 LT--EIDADRLLEEAEREREEPWIGKRDRALFTLLYGCGLRISEALGLAARDAPLGD-TL 191

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R+ GKG K R++P+LP+V +A+  Y D CPF L  +   PLF G RG  LN  + Q  ++
Sbjct: 192 RVTGKGRKDRMIPILPAVTEAVRAYLDSCPFTLAPD--GPLFVGTRGGRLNASIAQHQMQ 249

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +LR  +G+P + T H LRHSFATHLL++GGDLR+IQ +LGH  LSTTQ YT+V ++    
Sbjct: 250 KLRALMGMPDNATPHALRHSFATHLLADGGDLRAIQDLLGHASLSTTQRYTDVENEQ--- 306

Query: 309 WMMEIYDQTHPSITQ 323
            +M +Y   HP   +
Sbjct: 307 -LMNVYRNAHPRARK 320


>gi|189459721|ref|ZP_03008506.1| hypothetical protein BACCOP_00349 [Bacteroides coprocola DSM 17136]
 gi|189433568|gb|EDV02553.1| hypothetical protein BACCOP_00349 [Bacteroides coprocola DSM 17136]
          Length = 312

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 86/306 (28%), Positives = 144/306 (47%), Gaps = 16/306 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            + Q L++E+ LS+ T+Q+Y  D  +   +L              Q++  ++  F +   
Sbjct: 13  KYKQYLKLEKSLSENTVQAYLTDLDKLFAYLTLENI------DYTQVTLQDLETFSAGLH 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              I  RS  R LSGI+SF  +L       +     + + +    LP  L+ ++   L+ 
Sbjct: 67  DIGIHPRSQARILSGIRSFYHFLVLDDYIQQDPTELLESPQIGKHLPDVLSVEEIDALI- 125

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                +   +     RN AIL  LY CGLR+SE  +L   ++  D+  ++++GKG K R+
Sbjct: 126 ----GSIDRSTREGQRNCAILETLYSCGLRVSELCNLKISDLYFDEGFIKVEGKGSKQRL 181

Query: 200 VPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+ P     I  Y+      L     +  +F    GK ++  +    I++L   +GL  
Sbjct: 182 VPISPRAINEIRNYFIERNQGLIKPEYEDFVFISRFGKNISRIMVFHIIKELASLIGLKK 241

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HT RHSFATHLL  G +LR+IQ +LGH  + TT+IYT+++       ++      H
Sbjct: 242 KISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHIDKNRLRQEII----GHH 297

Query: 319 PSITQK 324
           P   + 
Sbjct: 298 PRNIKH 303


>gi|313837516|gb|EFS75230.1| tyrosine recombinase XerD [Propionibacterium acnes HL037PA2]
 gi|314927276|gb|EFS91107.1| tyrosine recombinase XerD [Propionibacterium acnes HL044PA1]
 gi|314972722|gb|EFT16819.1| tyrosine recombinase XerD [Propionibacterium acnes HL037PA3]
 gi|328907874|gb|EGG27637.1| site-specific tyrosine recombinase XerD [Propionibacterium sp. P08]
          Length = 306

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 88/312 (28%), Positives = 149/312 (47%), Gaps = 21/312 (6%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           + +++L++L +ERGLS  T+Q+Y  D  ++  +L     +   I+++ +++  ++  F  
Sbjct: 8   QAEDYLRHLVVERGLSDNTVQAYRRDLLRYQKYL-----DSRGIRSLAEVTRVDVEEFRR 62

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                 +   S+ R +  +++   +  +           +    +S  LP+AL  +Q   
Sbjct: 63  YLDQLGLAPASVTRCVVAVRNLHHFAVESGQAKTDVTAGISPGTRSRRLPKALTMEQVEA 122

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----MDDQSTLRIQG 192
           L+          +     R++A+L LLYG G R+SE  +L   +I     D    LR+ G
Sbjct: 123 LL-----AAPDTSTVEGLRDTALLELLYGTGARVSEVCALDVDDIRPVLDDPDLGLRLIG 177

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLN--LNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           KGDK RIVPL     +A+  +            N +  L    RG+ L+       IR+ 
Sbjct: 178 KGDKERIVPLGSYAAQAVDAWLVRGRPAWAQLGNGEHALLLNTRGRRLSRQSAWTVIRRA 237

Query: 251 RRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
               GL +   + H+LRHS+ATHLL  G D+R +Q +LGH  ++TTQIYT V      D 
Sbjct: 238 GEAAGLDVEHLSPHSLRHSYATHLLDGGADIRVVQELLGHSSVTTTQIYTLVT----ADH 293

Query: 310 MMEIYDQTHPSI 321
           + E+Y  +HP  
Sbjct: 294 LREVYRSSHPRA 305


>gi|313669090|ref|YP_004049374.1| integrase/recombinase [Neisseria lactamica ST-640]
 gi|313006552|emb|CBN88016.1| putative integrase/recombinase [Neisseria lactamica 020-06]
          Length = 302

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 85/313 (27%), Positives = 146/313 (46%), Gaps = 16/313 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
                  +L+N+  E G S+ T+ +Y  D  + L  +    E  +     + LS  +  A
Sbjct: 6   FAAHFDAYLENIVRE-GKSEHTVAAYRRDLEELLAQMPSEAEGGV----PQDLSRRDFTA 60

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            + +   + +  R+L R LS  + +  +L KR +        +   K+   +P+AL ++ 
Sbjct: 61  ALRRLSQRGLNARTLARKLSSWRQYCAWLVKRGLMRADPTAGISPPKQPQRIPKALPQEW 120

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++D  +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GK
Sbjct: 121 LNRMLDLPV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGK 176

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R VPL     +A+  Y  L     +      LF G  G  L+    Q+ + Q    
Sbjct: 177 GRKQRQVPLTGKSAEALKNYLPLRQTASDGK---ALFTGRNGTRLSQRQIQKRLAQWAAI 233

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G     + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +
Sbjct: 234 NGDGRHVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARL 289

Query: 314 YDQTHPSITQKDK 326
           YD+ HP   +++K
Sbjct: 290 YDEAHPRAKRQEK 302


>gi|167568329|ref|ZP_02361203.1| site-specific tyrosine recombinase XerC [Burkholderia oklahomensis
           C6786]
          Length = 306

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 84/317 (26%), Positives = 156/317 (49%), Gaps = 29/317 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L NL   R LS  TL++Y  +  +         ++    + +  L+  ++R  +++  
Sbjct: 8   DYLSNLRHVRKLSDHTLRAYAHELDEL--------KKLANGRPLESLTAVDVRGAVARAH 59

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +  RS+   LS  ++F ++  +      + +  +R  K++  LP+AL+   A  L+D
Sbjct: 60  AGGLSARSISHRLSAWRAFYRWFAQHVEMNANPVATIRAPKRAKMLPKALSVDDAAALMD 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP-----------QNIMDDQSTL 188
                          R+ AIL L Y  GLR++E + L               +   ++ +
Sbjct: 120 -----APASGTAESLRDHAILELFYSSGLRLAELIGLDVAYVKIGEYRSEGWLDLAEAEV 174

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            ++GKGDK R VP+      A+  +  +    +  +   PLF  +RG  ++PGV +  ++
Sbjct: 175 TVRGKGDKERKVPVGRKAIDALNAWLAVRGEFVRHDPH-PLFLSVRGNRMSPGVVRGRVK 233

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     G+P +   H LRHSFATH+L + GDLR++Q +LGH  +S TQ+YT+++ ++   
Sbjct: 234 RAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQH--- 290

Query: 309 WMMEIYDQTHPSITQKD 325
            + +IYD  HP   ++D
Sbjct: 291 -LAKIYDSAHPRAKKRD 306


>gi|91201862|emb|CAJ74922.1| similar to site-specific recombinase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 295

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 146/309 (47%), Gaps = 15/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +   +++  L +E G +  T+  Y+ D + F+ FL         I     +    I +
Sbjct: 1   MDELIDSFINYLLVECGSAMNTIHGYQSDLQLFIKFLLGK-----NIHDFSTIRPNIITS 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           FI   + +     S+ R++  I+ F K+L       ++ ++++ + K    LP  +   +
Sbjct: 56  FIISEKHRGQSVNSINRAIVSIRMFYKFLILEGKLQKNPLVSLDSPKLWKKLPYVVPIHK 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+       +     +  RN AIL LLY  G R+SE  +++   I  +   ++ +GK
Sbjct: 116 IEDLL-----SAADVKTKLGIRNKAILELLYATGARVSEVATISLNGINLEYGYIKCKGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K RIVPL      AI EY   + P   +      LF    G+PL        ++    
Sbjct: 171 GSKERIVPLGKKASIAIQEYLTTVRPQIKDSQNSHYLFLSRTGRPLRRENIWLIVKNCAL 230

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+  + + H LRHSFATHLL NG DLR++Q +LGH  +STTQIYT+VN ++    +  
Sbjct: 231 KAGITEAISPHKLRHSFATHLLENGADLRAVQEMLGHVSISTTQIYTHVNKQH----LKA 286

Query: 313 IYDQTHPSI 321
           I+ + HP  
Sbjct: 287 IHQKFHPRA 295


>gi|325271628|ref|ZP_08138130.1| site-specific tyrosine recombinase XerC [Pseudomonas sp. TJI-51]
 gi|324103232|gb|EGC00577.1| site-specific tyrosine recombinase XerC [Pseudomonas sp. TJI-51]
          Length = 299

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 82/312 (26%), Positives = 153/312 (49%), Gaps = 17/312 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++ + +  +L  ER +S+ TL  Y  D  + + +      ++  I   + L   ++R 
Sbjct: 1   MERQLEAYCAHLRSERQVSEHTLLGYRRDLDKVIAYC-----KEQGIADWQALQIQQLRQ 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            +++        RSL R LS ++   +YL +  +        +   K    LP+ L+  +
Sbjct: 56  LVARLHHHGQASRSLARLLSAVRGLYRYLNREGLCQHDPAAGLSAPKGERKLPKVLDTDR 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           AL L+D  +     +  +I  R+ A+L L Y  GLR+SE  +L   ++      +++ GK
Sbjct: 116 ALQLLDGGV-----DDDFIARRDQAMLELFYSSGLRLSELSNLDLDHLDLAAGLVQVLGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R++P+    R+A+ E+Y L    +       +F   +G  ++P   Q+ ++ +   
Sbjct: 171 GGKARVLPVGRKAREALKEWYRLRG--IGNPRDRAVFITRQGNRISPRTVQQRVKAVGER 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRHSFA+H+L +  DLR++Q +LGH  +STTQIYT+++ ++    +  +
Sbjct: 229 -ELGQHLHPHMLRHSFASHVLESSQDLRAVQEMLGHADISTTQIYTHLDFQH----LAAV 283

Query: 314 YDQTHPSITQKD 325
           YD  HP   +  
Sbjct: 284 YDSAHPRAKRSK 295


>gi|167579401|ref|ZP_02372275.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis
           TXDOH]
          Length = 306

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 85/321 (26%), Positives = 159/321 (49%), Gaps = 29/321 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
               ++L NL   R LS  TL++Y  +  +          +    + +  L+  ++R  +
Sbjct: 4   DPIADYLSNLRHVRKLSDHTLRAYAHELGEL--------RKLANGRPLESLTAVDMRGAV 55

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++     +  RS+   LS  ++F ++  +      + +  +R  K++ +LP+AL+   A 
Sbjct: 56  ARAHAGGLSARSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDAA 115

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-----------MDD 184
            L+D     T+        R+ AIL L Y  GLR++E + L  +                
Sbjct: 116 ALMDAPTAGTAE-----HLRDHAILELFYSSGLRLAELIGLDVEYTKDGDYRSEGWLDLA 170

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           ++ + ++GKGDK R VP+      A+  +  +    +  + + PLF  +RG  ++PGV +
Sbjct: 171 EAEVTVRGKGDKERKVPVGRKAIDALNAWLAVRGEFVKRDAR-PLFLSVRGNRMSPGVVR 229

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  +S TQ+YT+++ +
Sbjct: 230 ERVKRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQ 289

Query: 305 NGGDWMMEIYDQTHPSITQKD 325
           +    + +IYD  HP   ++D
Sbjct: 290 H----LAKIYDSAHPRAKKRD 306


>gi|161611265|ref|YP_294803.2| site-specific tyrosine recombinase XerD [Ralstonia eutropha JMP134]
          Length = 305

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 88/315 (27%), Positives = 146/315 (46%), Gaps = 18/315 (5%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
             ++ EL      +   L +E GLS+ T+ +Y  D      +L      + +   +  + 
Sbjct: 6   AAIAPEL-DLVSRFCDALWLEDGLSRNTMDAYRRDLSMLARWL-----HQSSNGGLLGIG 59

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
            TE+ A+   R  +     S  R L+  + F ++  + ++      + +R  K+   +P+
Sbjct: 60  DTELNAYFLARHPETRASSS-NRRLAVFRRFYQWALREQMIEADPCILLRPAKQPPRVPK 118

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L+E Q   L++         T  +  R+  +L L+Y  GLR+SE   +    I  ++  
Sbjct: 119 TLSEAQVEALLE-----APDTTTPLGLRDRTMLELMYASGLRVSELTQMKTVEIGLNEGV 173

Query: 188 LRIQG-KGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            R+ G KGDK R+VP        +  Y     P  L       LF   RG+ +    F  
Sbjct: 174 ARVVGGKGDKERLVPFGMQASDWLRRYLGSARPALLAGRACDALFVTQRGEGMTRQAFWH 233

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            I++  R  G+    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  + 
Sbjct: 234 LIKRHARDAGITAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER 293

Query: 306 GGDWMMEIYDQTHPS 320
               + E++ Q HP 
Sbjct: 294 ----LRELHQQHHPR 304


>gi|72117696|gb|AAZ59959.1| tyrosine recombinase XerD subunit [Ralstonia eutropha JMP134]
          Length = 327

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 88/315 (27%), Positives = 146/315 (46%), Gaps = 18/315 (5%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
             ++ EL      +   L +E GLS+ T+ +Y  D      +L      + +   +  + 
Sbjct: 28  AAIAPEL-DLVSRFCDALWLEDGLSRNTMDAYRRDLSMLARWL-----HQSSNGGLLGIG 81

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
            TE+ A+   R  +     S  R L+  + F ++  + ++      + +R  K+   +P+
Sbjct: 82  DTELNAYFLARHPETRASSS-NRRLAVFRRFYQWALREQMIEADPCILLRPAKQPPRVPK 140

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L+E Q   L++         T  +  R+  +L L+Y  GLR+SE   +    I  ++  
Sbjct: 141 TLSEAQVEALLE-----APDTTTPLGLRDRTMLELMYASGLRVSELTQMKTVEIGLNEGV 195

Query: 188 LRIQG-KGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            R+ G KGDK R+VP        +  Y     P  L       LF   RG+ +    F  
Sbjct: 196 ARVVGGKGDKERLVPFGMQASDWLRRYLGSARPALLAGRACDALFVTQRGEGMTRQAFWH 255

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            I++  R  G+    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  + 
Sbjct: 256 LIKRHARDAGITAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER 315

Query: 306 GGDWMMEIYDQTHPS 320
               + E++ Q HP 
Sbjct: 316 ----LRELHQQHHPR 326


>gi|83749114|ref|ZP_00946119.1| Integrase/recombinase (XerD/RipX family) [Ralstonia solanacearum
           UW551]
 gi|207721732|ref|YP_002252171.1| integrase/recombinase protein [Ralstonia solanacearum MolK2]
 gi|207742496|ref|YP_002258888.1| integrase/recombinase protein [Ralstonia solanacearum IPO1609]
 gi|83724235|gb|EAP71408.1| Integrase/recombinase (XerD/RipX family) [Ralstonia solanacearum
           UW551]
 gi|206586895|emb|CAQ17480.1| integrase/recombinase protein [Ralstonia solanacearum MolK2]
 gi|206593887|emb|CAQ60814.1| integrase/recombinase protein [Ralstonia solanacearum IPO1609]
          Length = 308

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 80/307 (26%), Positives = 137/307 (44%), Gaps = 18/307 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  Q +   L +E GL++ TL +Y  D   +  +LA         + I Q    ++  + 
Sbjct: 17  EAIQRFCDALWLEDGLARNTLDAYRRDLTLYAQWLAGRG------KAIDQTEDDDLADYF 70

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           + R  +     +  R  +  K F ++  +  +        +   K+   +P+ L+E Q  
Sbjct: 71  AARHEESRA-STANRRRTVFKRFFQWALREHVVGADPSRLLSTAKQPPRIPKTLSEAQVE 129

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKG 194
            L+             +  R+ A++ L+Y  GLR+SE ++L    +  ++  +R I GKG
Sbjct: 130 ALI-----AAPDVDTPLGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEGVVRVIGGKG 184

Query: 195 DKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            K R+VP        +  Y        L       LF   RG+ +    F   I++    
Sbjct: 185 GKDRLVPFGAEAGDWLRRYLRDGRTALLGKRTADALFVTARGEGMTRQAFWHLIKRYALR 244

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  +
Sbjct: 245 ADIHAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARER----LRTL 300

Query: 314 YDQTHPS 320
           + Q HP 
Sbjct: 301 HAQHHPR 307


>gi|314923700|gb|EFS87531.1| tyrosine recombinase XerD [Propionibacterium acnes HL001PA1]
          Length = 306

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 90/312 (28%), Positives = 146/312 (46%), Gaps = 21/312 (6%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             +++L++L +ERGLS  T+Q+Y  D  ++  +L         I ++ +++  ++  F  
Sbjct: 8   HVEDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLGSR-----GIGSLAEVTRVDVEEFRR 62

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                 +   S+ R +  +++  ++              M    +S  LP+AL   Q  +
Sbjct: 63  HLDHIGLAPASVTRCVVAVRNLHRFAVGSGQVQADVTAGMSPGTRSRRLPKALTMDQVES 122

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----MDDQSTLRIQG 192
           L+          +     R++A+L LLYG G R+SE  +L   +I     D    LR+ G
Sbjct: 123 LL-----AAPDTSTVEGLRDAALLELLYGTGARVSEVCALDVDDIRRVLDDPDLGLRLIG 177

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           KGDK RIVPL     KA+  +            N +  L    RG+ L+       IR+ 
Sbjct: 178 KGDKERIVPLGSYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRRA 237

Query: 251 RRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
               GL +   + H+LRHS+ATHLL  G D+R +Q +LGH  ++TTQIYT V      D 
Sbjct: 238 GEAAGLDVEHLSPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVT----ADH 293

Query: 310 MMEIYDQTHPSI 321
           + E+Y  +HP  
Sbjct: 294 LREVYRSSHPRA 305


>gi|291279466|ref|YP_003496301.1| site-specific DNA tyrosine recombinase XerD [Deferribacter
           desulfuricans SSM1]
 gi|290754168|dbj|BAI80545.1| site-specific DNA tyrosine recombinase XerD [Deferribacter
           desulfuricans SSM1]
          Length = 293

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 147/305 (48%), Gaps = 18/305 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N+   L +E  LS+ T+++Y  D + FL F+     +K  I+     S   + ++I    
Sbjct: 6   NFKHYLLVEEYLSENTIKAYLSDVKAFLDFVKI---KKYDIK-----SEDTVISYIKNLI 57

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +     S+ R +S I  +  YL K K+  ++ +L +   KK   LP  LNE + L ++D
Sbjct: 58  KKSYSIESILRKISSISVYYDYLIKEKVIDKNPVLLIDKPKKWFKLPDFLNEDEILKILD 117

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            V   T H       R+  I+ +LY  G+RISE +++   N    +  +RI+GKG K R 
Sbjct: 118 TVDKSTPH-----GFRDYIIINMLYTSGMRISELVNIEVSNCDFRRGIIRIKGKGGKERF 172

Query: 200 VPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+   + + + +Y ++   + +       LF    G  L+     + +R+     G+  
Sbjct: 173 VPIHKKLIEELNKYLEIRHNYFVKGRDNGYLFLNKFGNKLSREYCWKIVRKYAEMAGIKK 232

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H  RH+FATHLL NG DLR IQ +LGH  + TT+IYT ++     D +       H
Sbjct: 233 KVSPHVFRHTFATHLLKNGADLRVIQMLLGHSSILTTEIYTQLDD----DSLRNSLSIHH 288

Query: 319 PSITQ 323
           P   +
Sbjct: 289 PRFKR 293


>gi|134297261|ref|YP_001120996.1| site-specific tyrosine recombinase XerC [Burkholderia vietnamiensis
           G4]
 gi|134140418|gb|ABO56161.1| tyrosine recombinase XerC [Burkholderia vietnamiensis G4]
          Length = 306

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 90/323 (27%), Positives = 160/323 (49%), Gaps = 29/323 (8%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L      +L NL+  R LS+ TL+ Y  +  +     A         + +  L+ T++R 
Sbjct: 2   LDDPIAAYLSNLKHVRQLSEHTLRGYTHELDELKKLAAG--------RPLETLTATDVRG 53

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            +++     +  RS+   LS  ++F ++L  R     + +  +R  K+  +LP+AL+   
Sbjct: 54  AVARAHAGGLSARSISHRLSAWRAFYRWLALRIEMPANPVAAVRAPKRPKTLPKALSVDD 113

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP-----------QNIM 182
           A  L+D  L  T+        R+ AIL L Y  GLR++E + L               + 
Sbjct: 114 ASALMDAPLPDTTE-----GIRDHAILELFYSSGLRLAELVGLDAMYTQADGYRSAGWLD 168

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
             ++ + ++GKG+K R VP+      A+  +  +    +  +   PLF  +RG  + PGV
Sbjct: 169 LAEAEVTVRGKGNKERKVPVGRKAIAALNAWLAVRGEFVKHDPH-PLFLSVRGNRMAPGV 227

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +  +++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  ++ TQIYT+++
Sbjct: 228 VRERVKRAALSAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLD 287

Query: 303 SKNGGDWMMEIYDQTHPSITQKD 325
            ++    + +IYD  HP   ++D
Sbjct: 288 FQH----LAKIYDSAHPRAKKRD 306


>gi|42520593|ref|NP_966508.1| phage integrase family site specific recombinase [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|42410332|gb|AAS14442.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 309

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 112/314 (35%), Positives = 172/314 (54%), Gaps = 7/314 (2%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L    + W + L   R  S  TL+SY  D +  + FL  +   ++ + T+ +LS  E+R
Sbjct: 2   DLGSIIEKWYEWLRRNRSYSPNTLESYMRDLKDLISFLNTHIGGEVNVGTLEKLSVPELR 61

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           ++++ R  + +  RS  R+LS I++F KY+K         + ++    +  +LP+AL+  
Sbjct: 62  SWLTSRYARGVNARSNTRALSVIRNFFKYIKNNHNIDNEAVFSLSRPIQRRTLPKALSIP 121

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
              TL+  + L    E+ W+  R  AI+ LLY  GLRISEAL+L   +I ++  +L + G
Sbjct: 122 DIKTLLKEMKLSDLGES-WVVKREIAIIVLLYSTGLRISEALNLRVSDINNE--SLIVTG 178

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KGDK R V +LP V+K I EY   CP+    N    LF G+RGK L        ++++RR
Sbjct: 179 KGDKQRQVFILPVVKKCIQEYVKACPYLGTNNETQYLFLGVRGKKLGRTYVANRLQKIRR 238

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            L LP   + H  RHSFATHLL    D+RSIQ +LGH  L TTQIYT++N ++  +    
Sbjct: 239 MLNLPEILSPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQIYTHLNYQDVFN---- 294

Query: 313 IYDQTHPSITQKDK 326
           +Y      + +K K
Sbjct: 295 MYKNFQQGLEKKSK 308


>gi|225351382|ref|ZP_03742405.1| hypothetical protein BIFPSEUDO_02976 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157726|gb|EEG71009.1| hypothetical protein BIFPSEUDO_02976 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 308

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 86/315 (27%), Positives = 160/315 (50%), Gaps = 20/315 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  + +   L+  RGLS+ T ++Y  D  + L+ L     E++  + + +++  ++R ++
Sbjct: 5   KSVEAFDTYLKANRGLSENTRKAYRGDVEECLLAL-----ERLRCRDLNEVTIEDLRMWM 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++  ++     S+ R    ++ F  +  +  +TT      +   K  ++LP  L+E QA 
Sbjct: 60  AE-SSKNHAKSSMARKTVAVRGFFAWTHEHGVTTTDPACALMTPKIPDTLPDVLSESQAE 118

Query: 136 TLVDNVLL--------HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L++ V            + + + I+ R++A+L LLY  G+R++E + L   +++    T
Sbjct: 119 QLMERVDEDGETSQPKERTMKQQAIELRDAAMLELLYATGMRVAELVGLDVPDVVFSNRT 178

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           +++ GKG+K R++P     +KAI  + D   P  +       LF G +GK ++  + +R 
Sbjct: 179 VKVTGKGNKQRVMPFGAPAQKAIRRWLDDGRPLLVGEQSAAALFLGRQGKRIDQRMVRRV 238

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           + +  R  G+P   + H LRHS ATH+L  G DLR +Q +LGH  L TTQ YT+V+ +  
Sbjct: 239 VHECARDAGVP-DISPHALRHSAATHMLDGGADLREVQELLGHSSLKTTQRYTHVSIEQ- 296

Query: 307 GDWMMEIYDQTHPSI 321
              +   Y Q  P  
Sbjct: 297 ---LKARYGQAFPRA 308


>gi|187779532|ref|ZP_02996005.1| hypothetical protein CLOSPO_03128 [Clostridium sporogenes ATCC
           15579]
 gi|187773157|gb|EDU36959.1| hypothetical protein CLOSPO_03128 [Clostridium sporogenes ATCC
           15579]
          Length = 291

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 161/304 (52%), Gaps = 17/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + ++++L+ ++ LSK TL++Y  D  +F  F+    E+ +++ T+       I AF+  
Sbjct: 5   IEIYIKDLQ-KKNLSKNTLEAYRRDVEKFSEFVKGREEKILSVDTVT------IMAFVQY 57

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            + +     S+ R++  I++F KYL K+ + +E   L     K   ++P+ L+ ++   L
Sbjct: 58  LQREGRATSSIVRNIVSIRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILSVEEVDKL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++      S ++     R+ A+L L+Y  G++I+E L+L   +I    + ++ +G   + 
Sbjct: 118 LN------SPDSSKKGLRDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRE 171

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RI+P+     K +  Y ++ P  +N+     LF  ++G  +    F + I+   +   + 
Sbjct: 172 RIIPIGSYAVKCLKNYLEVRP-AINVYNLDYLFLNLKGTQMTRQGFWKIIKFYAKEASID 230

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
               ++TLRHSFA HLL NG D++S+Q +LGH  L+ TQIY++++ K+    + E+Y   
Sbjct: 231 KEIDSYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKS---KIAEVYKNA 287

Query: 318 HPSI 321
           HP  
Sbjct: 288 HPRA 291


>gi|153939513|ref|YP_001391125.1| tyrosine recombinase XerD [Clostridium botulinum F str. Langeland]
 gi|170757059|ref|YP_001781413.1| tyrosine recombinase XerD [Clostridium botulinum B1 str. Okra]
 gi|152935409|gb|ABS40907.1| tyrosine recombinase XerD [Clostridium botulinum F str. Langeland]
 gi|169122271|gb|ACA46107.1| tyrosine recombinase XerD [Clostridium botulinum B1 str. Okra]
 gi|295319169|gb|ADF99546.1| tyrosine recombinase XerD [Clostridium botulinum F str. 230613]
          Length = 291

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 161/304 (52%), Gaps = 17/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +N++++L+ ++ LSK TL++Y  D  +F  F+    E+ +++ T+       I AF+  
Sbjct: 5   IENYIKDLQ-KKNLSKNTLEAYRRDVEKFSEFVRNREEKILSVDTVT------IMAFVQY 57

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            + +     S+ R++  I++F KYL K+ + +E   L     K   ++P+ L+ ++   L
Sbjct: 58  LQREGRATSSIVRNIVSIRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILSVEEVDKL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++      S  +     R+ A+L L+Y  G++I+E L+L   +I    + ++ +G   + 
Sbjct: 118 LN------SPNSSKKGLRDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRE 171

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RI+P+     K +  Y ++ P  +N+     LF  ++G  +    F + I+   +   + 
Sbjct: 172 RIIPIGSYAIKCLKNYLEVRP-AINVYNLDYLFLNLKGTQMTRQGFWKIIKFYAKEASID 230

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
               ++TLRHSFA HLL NG D++S+Q +LGH  L+ TQIY++++ K+    + E+Y   
Sbjct: 231 KEIDSYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKS---KIAEVYKNA 287

Query: 318 HPSI 321
           HP  
Sbjct: 288 HPRA 291


>gi|121608682|ref|YP_996489.1| tyrosine recombinase XerD [Verminephrobacter eiseniae EF01-2]
 gi|121553322|gb|ABM57471.1| tyrosine recombinase XerD [Verminephrobacter eiseniae EF01-2]
          Length = 303

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 79/308 (25%), Positives = 142/308 (46%), Gaps = 15/308 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                +L  L +E GL++ TL +Y  D  ++  +L            +   +   ++A+ 
Sbjct: 5   DAIDAFLDALWLEDGLARNTLAAYRSDLTRYAQWLHAQQP----AVALDDTAEHHLQAYF 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           + R  Q     S  R L+ ++ +  +  + +  +      +   +    +P+ + E Q  
Sbjct: 61  AARHAQTRA-TSANRRLTVLRRYFHWALRERRISADPTARLAAARVPLRVPKTMTETQVE 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L     L        +  R+ A+L L+Y  GLR++E + L   ++  D++ LR+ GKG 
Sbjct: 120 AL-----LQAPDPGTPLGLRDRAMLELMYASGLRVTELVGLKTFHLALDENLLRVTGKGG 174

Query: 196 KIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K R++P      + +  Y        L       LF   RG  +   +F   ++Q  R  
Sbjct: 175 KERLLPFGVEAGQWLERYLQQARGVILGGQRTDDLFVTRRGCGMTRVMFWIIVKQWARVA 234

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+ +  + HTLRH+FATHLL++G DLR +Q +LGH  +STT IYT+V  +     + +++
Sbjct: 235 GITVPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARQR----LKQLH 290

Query: 315 DQTHPSIT 322
           D+ HP   
Sbjct: 291 DEHHPRSR 298


>gi|146297327|ref|YP_001181098.1| tyrosine recombinase XerD [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145410903|gb|ABP67907.1| tyrosine recombinase XerD subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 291

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 79/308 (25%), Positives = 141/308 (45%), Gaps = 18/308 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +K  + + ++L  ++  S+ T+ SY  D ++++ FL     +      I   S   I  +
Sbjct: 1   MKIVEAFYEHLCQKQRFSQNTVMSYLRDIKKYIEFLNNTGIK------IEDTSQATIITY 54

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I   +     + ++ R++  +K F ++LK   I     I  +   K   + P+ L + + 
Sbjct: 55  IINMQKSGRSNSTIARAIVSLKVFYEFLKDHNIVDIGKIE-IDPPKLERTPPQILTKDEV 113

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+         E      R+ A+L LLY  G+R+SE +SL   +I  +   +  + K 
Sbjct: 114 EKLL-----SCPREDDIKGIRDKAMLELLYATGIRVSELISLNLSDINLEHGYIICRNKK 168

Query: 195 DKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
              RI+P+     +A+ +Y +   P+      +  LF    G  +    F + ++     
Sbjct: 169 R-DRIIPIGSYAIEAVEKYLNYSRPYLARKKEEEALFLNFNGARMTRQGFWKIVKFYTNV 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    T H LRHSFATHL+ NG D+R++Q +LGH  +STTQ Y  V +      + E+
Sbjct: 228 AGINKEITPHILRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVAN----IKLKEV 283

Query: 314 YDQTHPSI 321
           Y + HP  
Sbjct: 284 YQKAHPRA 291


>gi|284037325|ref|YP_003387255.1| tyrosine recombinase XerD [Spirosoma linguale DSM 74]
 gi|283816618|gb|ADB38456.1| tyrosine recombinase XerD [Spirosoma linguale DSM 74]
          Length = 305

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 150/307 (48%), Gaps = 15/307 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +   L++ER L++ ++++Y  D  +   ++          +T  Q++  E+  F+  
Sbjct: 6   INAFKNYLKLERSLAENSVEAYLHDAEKLYEYILLTDP----ARTPMQVTEKELMNFLKY 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +   S  R LSGIKSF KYL    +        + + K    LP  L+  +   +
Sbjct: 62  LGELGLSAHSQARMLSGIKSFFKYLLLEGLIERDPTQLLESPKLGRKLPDTLSFPEIEDM 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +  + L T   T+     + A+L +LY  GLR+SE L+L   N    +  +R+ GKGDK+
Sbjct: 122 LAAIDLSTPGGTR-----DRAMLEVLYSSGLRVSELLNLRLTNCFFTEGFVRVLGKGDKV 176

Query: 198 RIVPLLPSVRKAILEY--YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R+VP+          Y  +     D+    +  +F  +RGK L+       I++L   +G
Sbjct: 177 RLVPIGEDAMHYTRIYVEHVRQKLDVQKGDEDTIFLNLRGKQLSRISVFTTIKKLASEVG 236

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + + HT RHSFATHL+  G DLR++Q +LGH  ++TT+IYT+++     D++ +   
Sbjct: 237 IKKTISPHTFRHSFATHLIEGGADLRAVQQMLGHESITTTEIYTHLD----RDYLQQTLK 292

Query: 316 QTHPSIT 322
           + HP   
Sbjct: 293 EYHPRAK 299


>gi|331701475|ref|YP_004398434.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929]
 gi|329128818|gb|AEB73371.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929]
          Length = 314

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 94/321 (29%), Positives = 152/321 (47%), Gaps = 13/321 (4%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           S E  K  Q +L+ L+ +R  S  T+Q+Y+    +F  FLA    E+   + + Q+   +
Sbjct: 4   SDEDQKNIQWFLKYLQSDRHYSTDTIQAYQQAIAEFTRFLAEIPSER---KPLTQVDSFD 60

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           + AF+S    +K    S+ + +S +KSF  +L K  +   +    +        LPR L 
Sbjct: 61  VEAFLSDLYERKYARNSIAQKVSALKSFYAFLVKNTVIANNPFEYVHLKSNHRRLPRFLY 120

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           + +   L      + +H+   +  R++A+L  LY  G+R+SE   +   +I  D  T+ +
Sbjct: 121 QNEMRALFQGARQNPNHQ---LGLRDTAVLETLYATGIRVSECAGIQLNDIDLDNRTILV 177

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYI 247
            GKG+K R VP     ++AI  Y       +          LF    G+PL     +  +
Sbjct: 178 TGKGNKQRYVPFGEYAQEAIETYLSDARSPIMAKYHQDHPFLFVNHYGRPLTSRGIEYLM 237

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            Q+ +   L      H LRH+FAT +L+NG D+RS+Q +LGH  LSTTQIYT+V   +  
Sbjct: 238 DQIVKQSSLTTKIHPHMLRHTFATEMLNNGADMRSVQELLGHSSLSTTQIYTHVTKSH-- 295

Query: 308 DWMMEIYDQTHPSITQKDKKN 328
             +M  Y +  P      K N
Sbjct: 296 --LMNDYKKYFPRNNDSLKSN 314


>gi|18479027|gb|AAL73390.1|AF416734_1 site-specific recombinase [Pseudomonas fluorescens]
          Length = 298

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 86/310 (27%), Positives = 147/310 (47%), Gaps = 18/310 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++   + ++L  ER +S  TL +Y  D  + + +      +K  I +   L    +R+
Sbjct: 1   MERQLDAYCEHLRSERQVSPHTLSAYRRDLEKVVGWC-----QKQNIGSWAALDIQRLRS 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            I++   Q    RSL R LS ++    YL +  +        +   K    LP+ LN  +
Sbjct: 56  LIARLHQQGQSSRSLARLLSAVRGLYHYLNREGLCDHDPATGLAPPKGERRLPKTLNTDR 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           AL L++      + E  ++  R+ AIL L Y  GLR+SE   L    +      +++ GK
Sbjct: 116 ALQLLEG-----AVEDDFLAQRDQAILELFYSSGLRLSELTGLNLDQLDLADGMVQVLGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R++P+    R+A+ ++  L    L       +F   +GK L P   Q  ++     
Sbjct: 171 GSKTRLLPVGRKAREALEQWLALR--ALTNPADDAVFVSQQGKRLGPRAIQLRVKAAGER 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L  +   H L HSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +
Sbjct: 229 -ELGQNLHPHML-HSFASHLLESSQDLRAVQELLGHSDIKTTQIYTHLDFQH----LATV 282

Query: 314 YDQTHPSITQ 323
           YD  HP   +
Sbjct: 283 YDSAHPRAKR 292


>gi|119026081|ref|YP_909926.1| site-specific tyrosine recombinase XerC [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765665|dbj|BAF39844.1| probable integrase [Bifidobacterium adolescentis ATCC 15703]
          Length = 329

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 81/315 (25%), Positives = 150/315 (47%), Gaps = 20/315 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                +   L+  RGLS  T ++Y  D  + L+ L      K     + +++  ++R ++
Sbjct: 26  DALDGFDAYLKANRGLSANTRRAYRSDVEECLVAL-----RKQGCVDLNEVTIEDLRLWM 80

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++  ++     S+ R    ++ F  +     + + +   +++  K  ++LP  LNE QA 
Sbjct: 81  AE-SSKNHARSSMARKTVAVRGFFAWAYDHDMASANPAASLQTPKIPDTLPAVLNETQAQ 139

Query: 136 TLVDNVLL--------HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L+D V            + + + I  R++A+L LLY  G+R++E + L   ++     T
Sbjct: 140 QLMDRVDEDGMEARSQEPNMKKQAIALRDAAMLELLYATGMRVAELVGLDVADVTFGNRT 199

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRY 246
           +++ GKGDK R++P      KA+ ++ +     L  +      F G +G  ++  + ++ 
Sbjct: 200 VKVTGKGDKQRVMPFGAPADKALRDWLEHGRPVLCGDMSDDAFFLGSQGGRIDQRMVRKV 259

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +    R  G+P   + H LRHS ATH+L  G DLR +Q +LGH  L TTQ YT+V+ +  
Sbjct: 260 VHDRAREAGVP-DISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQ- 317

Query: 307 GDWMMEIYDQTHPSI 321
              +   Y Q  P  
Sbjct: 318 ---LKARYGQAFPRA 329


>gi|296110353|ref|YP_003620734.1| site-specific recombinase, phage integrase family [Leuconostoc
           kimchii IMSNU 11154]
 gi|295831884|gb|ADG39765.1| site-specific recombinase, phage integrase family [Leuconostoc
           kimchii IMSNU 11154]
          Length = 304

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 91/314 (28%), Positives = 153/314 (48%), Gaps = 15/314 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +E+Q +   L  ER  S LTL++Y  D  +F+ FLA    +       R +   ++R 
Sbjct: 2   VTREQQLYRIYLVSERQYSPLTLKAYLSDIDEFINFLA----QNGGFTNFRAVQPLDVRV 57

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++    + +   S+ R +S ++ F +++   +   ++   N+   K  N LP    E +
Sbjct: 58  YLNDLYERHLARTSISRKISSLRMFYQFMVANQFVIDNPFENIALRKHQNHLPEFFYETE 117

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
             TL D       ++   +  RN+A+L  LY  G R++E  +LT   +   Q  + I GK
Sbjct: 118 MATLFDT----AYNQEDKLWQRNAALLEFLYATGARVTEIATLTIAQLDFSQRLVLIHGK 173

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQL 250
           G+K R VP      +A+++Y      DL      P   +F   RG+P+        + QL
Sbjct: 174 GNKDRYVPFGHFAAQALMQYLSETRADLTAKQPAPHQVVFVNHRGEPITAAGITYILNQL 233

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +   L      H LRH+FATHLL+NG D+R++Q +LGH  LSTTQ+YT+V  ++    +
Sbjct: 234 MQRSALTGKIHPHMLRHTFATHLLNNGADMRTVQELLGHVNLSTTQMYTHVTRES----L 289

Query: 311 MEIYDQTHPSITQK 324
            + Y    P   +K
Sbjct: 290 QKNYQAFFPRAKKK 303


>gi|330685662|gb|EGG97303.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU121]
          Length = 297

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 79/309 (25%), Positives = 152/309 (49%), Gaps = 16/309 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +L  L++ER  S  TL+SY  D  QF  FL   +        +    Y + R ++S 
Sbjct: 5   QKAFLYMLKVERNFSDHTLKSYRDDIVQFNDFLYQES------LDLNDFEYKDARNYLSF 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             ++ +   ++ R +S +++F +Y   +  +  +  + + + KK   LP+   E++   L
Sbjct: 59  LYSKNLKRTTVSRKISTLRTFYEYWMTQDESVVNPFVQLVHPKKEQYLPQFFYEEEMEAL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                  T         R+  IL LLY  G+R+SE + +  Q++      +++ GKG+K 
Sbjct: 119 F-----KTVETDSKKGMRDKVILELLYATGIRVSELVHIKTQDLDMKLPGVKVLGKGNKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R +P     +++I  Y        +++    L   ++G+P+     +  +  + +     
Sbjct: 174 RFIPFGEFCKQSIERYLKEFKPLKHVD-HDYLIVNMQGQPITERGVRYVLNDVVKRTSGV 232

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            +   H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++     + ++Y   
Sbjct: 233 TNIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ----LRKVYLNA 288

Query: 318 HPSITQKDK 326
           HP   ++++
Sbjct: 289 HPRAKKENE 297


>gi|269926944|ref|YP_003323567.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269790604|gb|ACZ42745.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 310

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 81/306 (26%), Positives = 146/306 (47%), Gaps = 14/306 (4%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           F+ L   + ++ +LE ER  S  T  +Y+ D  QF  +L         I +   ++ ++I
Sbjct: 2   FDGLSSVEEFISHLESERHFSNNTTAAYKNDILQFHDWLQGKDH----INSWAAVTSSDI 57

Query: 72  RAFISKRR---TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           + ++   +    +     +  R ++ IKSF ++L  + +  ++   ++ + +     P+A
Sbjct: 58  QDYLLYLKGNQDRAYAPSTQARKMAAIKSFFQFLVAKSVVDQNPASDLISPRVQKYWPKA 117

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++ ++   L    L   S        R+ A+L +LY  GLR+SE +SL   +I  D+S L
Sbjct: 118 ISVQEVNML----LAAASDSETPEGIRDRAMLEVLYRTGLRVSELVSLNVDDINLDESHL 173

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           +  G+G   R VPL       +  Y +   P  +    +  LF   RG+ L    F   +
Sbjct: 174 KCIGRGK-TRKVPLSQPAVDVLKLYLERSRPLLVRGQDEQALFVNHRGQRLTRQGFWLIL 232

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +      G+    T HTLRHSFA H++  G DLR +Q  LGH  ++TTQ+Y  + S +  
Sbjct: 233 KAYASEAGI-KGITPHTLRHSFAAHMIDGGIDLRQVQEWLGHASITTTQVYRQIKSNSHS 291

Query: 308 DWMMEI 313
           + +++I
Sbjct: 292 EKIIDI 297


>gi|255524155|ref|ZP_05391115.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296186613|ref|ZP_06855015.1| putative tyrosine recombinase XerD [Clostridium carboxidivorans P7]
 gi|255512140|gb|EET88420.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296048650|gb|EFG88082.1| putative tyrosine recombinase XerD [Clostridium carboxidivorans P7]
          Length = 292

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 161/308 (52%), Gaps = 16/308 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + K    +++NLE ++ +SK T+ +Y  D  +F  F+    E  + I+ +       I A
Sbjct: 1   MDKVFLKYIENLE-KKNVSKNTMDAYVRDISKFYNFIKERNENVVEIEVVS------IMA 53

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++ + + +     S+ R++  +++F KYL  +    E+ ++N    K  +++P+ L  ++
Sbjct: 54  YVQQLQKEGRATSSIIRNIVSLRNFYKYLTIKGFINENPMINYEIPKVKHNIPKILTVEE 113

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
             TL+      T         R+ A+L +LY  G++++E L++T  +I    + ++ +G 
Sbjct: 114 VDTLL-----STPDLGTNKGIRDKAMLEVLYATGMKVTEILNITIYDINLKLAYIKCKGS 168

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            ++ RI+P+     + + EY  +    +N+     LF  +RG  +    F + ++   + 
Sbjct: 169 KNQERIIPIGSIAIQCLQEYLKIRS-QINIYNLDLLFINLRGIQMTRQGFWKIVKYYAKA 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+     A TLRHSFA HLL NG D++S+Q +LGH  LS TQIY++++ KN    + E+
Sbjct: 228 AGVDKHINAFTLRHSFAVHLLQNGADIKSVQELLGHKDLSATQIYSSISRKN---KIAEV 284

Query: 314 YDQTHPSI 321
           Y ++HP  
Sbjct: 285 YKKSHPRA 292


>gi|239908039|ref|YP_002954780.1| tyrosine recombinase XerC [Desulfovibrio magneticus RS-1]
 gi|239797905|dbj|BAH76894.1| tyrosine recombinase XerC [Desulfovibrio magneticus RS-1]
          Length = 308

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 103/310 (33%), Positives = 153/310 (49%), Gaps = 7/310 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
             +L  L   +G S  T+ +YE D  QF  FL       + +     ++   +R F+++ 
Sbjct: 2   DEFLTALAAVKGYSPATVAAYEDDLAQFEAFLR---GRGLGLDAPEAITRDHVRGFLAEL 58

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             ++    S+ R LS ++ F KY  ++K         ++N K     PRALN  +A+ LV
Sbjct: 59  HRRRAAKSSMGRKLSTLRGFFKYQLQKKRLAADPTAGLKNPKAERRGPRALNADEAVALV 118

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                  + +      R+ A+  LLYG GLRISEAL L   ++   Q   R+ GKG K R
Sbjct: 119 TPPPAAPAADGSAAACRDLALAELLYGSGLRISEALGLDLDDLDLSQGIARVMGKGSKER 178

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           + PL  + R+ + EY           ++L LF G RG  L+     R +  L +  GL  
Sbjct: 179 LAPLSDASRERLREYLRRRGELGPGPMELALFLGNRGGRLDRRQAARIVDALAKGAGLAR 238

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRHSFATHLL +G DLRS+Q +LGH RL+TT  YTN++       ++ IYD+ H
Sbjct: 239 HAHPHMLRHSFATHLLESGADLRSVQELLGHARLTTTTRYTNLDLAR----IVGIYDKAH 294

Query: 319 PSITQKDKKN 328
           P    K + +
Sbjct: 295 PRSDHKGEGD 304


>gi|329890948|ref|ZP_08269291.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568]
 gi|328846249|gb|EGF95813.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568]
          Length = 304

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 127/307 (41%), Positives = 172/307 (56%), Gaps = 10/307 (3%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                WL++L  ER LS  TL++Y    R +L FL  +     +   +  ++  E RA +
Sbjct: 5   DALAAWLEHLAHERRLSPRTLEAYGHIGRLYLAFLERHRGGPQSAADLGSVTAAEARAHL 64

Query: 76  SKRR--TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++RR   + +  RSL ++L+ I+ F  +L +R       +  +R  K   SLPR ++E Q
Sbjct: 65  AERRSGDRPLNARSLSQTLAAIRGFHAFLDRRLGVATPQLALVRGPKVKPSLPRPVSEDQ 124

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           A  L+            W  AR+ A+L LLYGCGLRISEALSL   +    +S LRI GK
Sbjct: 125 AKGLLHEPEAD-PDMEPWEAARDRAVLTLLYGCGLRISEALSLKRSDAPLPES-LRITGK 182

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GDK R+VP+LP VR+A   Y  L PF ++ +    LFR  RG PL+    Q  +++LR  
Sbjct: 183 GDKTRMVPVLPEVREATQAYLALQPFVIDADQ--ALFRARRGGPLSARHVQATVQRLRGR 240

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           LGLP S T H LRHSFATHLL  G DLRSIQ +LGH  LSTTQ YT V++      ++  
Sbjct: 241 LGLPASATPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQKYTQVDAAR----LLAA 296

Query: 314 YDQTHPS 320
           Y Q HP 
Sbjct: 297 YAQAHPR 303


>gi|212710173|ref|ZP_03318301.1| hypothetical protein PROVALCAL_01227 [Providencia alcalifaciens DSM
           30120]
 gi|212687172|gb|EEB46700.1| hypothetical protein PROVALCAL_01227 [Providencia alcalifaciens DSM
           30120]
          Length = 309

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 76/313 (24%), Positives = 149/313 (47%), Gaps = 18/313 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L+ + + +L+ L +ER LS +T+ +Y          L      ++ +   ++L  T  R+
Sbjct: 13  LMIQVEAFLRYLRVERRLSPVTITNYRRQLSVVCQILG-----ELKVNQWQKLDITLGRS 67

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             +K R   +   S+   LS ++SF  ++ ++     + +  +   K    LP+ ++  +
Sbjct: 68  IAAKSRRTGLQAASMALRLSALRSFCDWMVQQGELPANPVKTLHAPKAKKRLPKNMDVDE 127

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++            +  R+  +L ++YG GLR+SE + L  +++  D   + + GK
Sbjct: 128 ISQLLNM------DSGDPLVVRDRTMLEVMYGAGLRLSELVGLDVKHLDLDLGEVWVMGK 181

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRR 252
           G K R +PL  +    +  + ++   +L   +   +F   +  K ++    Q+   Q   
Sbjct: 182 GSKERKIPLGKTAVSWLKRWLEMR--ELYEPVDGAVFISTQSGKRISNRNVQKRFEQWGI 239

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +      H LRHSFATH+L + G+LR +Q +LGH  LSTTQIYT+++ ++    +  
Sbjct: 240 KQEVNSHINPHKLRHSFATHILESSGNLRGVQELLGHANLSTTQIYTHLDFQH----LAN 295

Query: 313 IYDQTHPSITQKD 325
           +YD  HP   ++ 
Sbjct: 296 VYDVAHPRAKREK 308


>gi|260556505|ref|ZP_05828723.1| tyrosine recombinase XerC [Acinetobacter baumannii ATCC 19606]
 gi|260409764|gb|EEX03064.1| tyrosine recombinase XerC [Acinetobacter baumannii ATCC 19606]
          Length = 308

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 170/306 (55%), Gaps = 14/306 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+  +I+   S+ T+ +YE D + FL F       ++    +R +  +++R ++++R  
Sbjct: 15  WLKERKIQNQ-SEHTITAYERDVKSFLEFC------ELKKVDLRNVEASDLREYLAQRVE 67

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           Q ++   S++R L+ I+ F+K+ ++ K    +   + +  ++   LP  ++ +    ++D
Sbjct: 68  QDQLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILD 127

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             +     + + +  R+ A+L LLY  GLR++E   LT ++I  ++  +RI GKG+K RI
Sbjct: 128 QPMPEKPIDQQ-LWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRI 186

Query: 200 VPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP     ++++L +  +   +  + +   P+F   RG  L P   ++ ++   +  G+ +
Sbjct: 187 VPFGKKAKESLLNWLKIYNIWKGHFDQNAPVFISQRGGALTPRQIEKRVKLQAQRAGVNV 246

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRH FA+H+LS+ GDLRS+Q +LGH  LSTTQIYT+++     D + ++YDQ H
Sbjct: 247 DLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHLAQVYDQAH 302

Query: 319 PSITQK 324
           P  T+ 
Sbjct: 303 PRATKH 308


>gi|296136669|ref|YP_003643911.1| integrase family protein [Thiomonas intermedia K12]
 gi|295796791|gb|ADG31581.1| integrase family protein [Thiomonas intermedia K12]
          Length = 336

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 89/338 (26%), Positives = 154/338 (45%), Gaps = 35/338 (10%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           S  L +   ++L + + ER L++ TL +Y  D    L                 Q+    
Sbjct: 11  SPTLRQLAADYLAHAQTERRLAEGTLVNYRRDLDDLLQRAETLGA--------AQIESVH 62

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           IR + ++     +  R++   LS  +SF +++ +      + + ++R  K +  LP+AL+
Sbjct: 63  IRRWAAQLHAGGMSPRAIAARLSAWRSFFRWMGRLGFVAANPVQDVRAPKAAKPLPKALS 122

Query: 131 EKQALTLVDNVLLHTSHETKWIDARN------------SAILYLLYGCGLRISEALSLTP 178
             QA+ L       ++   +     +             AI  LLY CGLR+SE   L  
Sbjct: 123 VDQAVALAAYSPQKSTPAARPHRRPHQAEPFATRSARVHAIAELLYSCGLRVSELTGLDV 182

Query: 179 QNIMDDQSTL-------RIQGKGDKIRIVPLLPSVRKAILEYYDLCP----FDLNLNIQL 227
           +     +  +        + GKG+K R VP+      A+ ++ +  P     D + + Q+
Sbjct: 183 RASKTARGWIDWDAAEATVTGKGNKRRSVPIGRPALLALRQWLEQRPALLRPDADADAQV 242

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
            LF G RG  L P      +R+  R  GL      H LRHSFA+H+L + GDLR++Q +L
Sbjct: 243 ALFLGARGARLTPQRVWLELREHARAAGLDARVHPHMLRHSFASHVLQSSGDLRAVQELL 302

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           GH  ++TTQ+YT ++ ++    + ++YD  HP   +K 
Sbjct: 303 GHSSIATTQVYTRLDFQH----LAKVYDAAHPRARKKP 336


>gi|83720176|ref|YP_440728.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis
           E264]
 gi|167617501|ref|ZP_02386132.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis
           Bt4]
 gi|257140623|ref|ZP_05588885.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis
           E264]
 gi|83654001|gb|ABC38064.1| tyrosine recombinase XerC [Burkholderia thailandensis E264]
          Length = 306

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 84/321 (26%), Positives = 159/321 (49%), Gaps = 29/321 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
               ++L NL   R LS  TL++Y  +  +          +    + +  L+  ++R  +
Sbjct: 4   DPIADYLSNLRHVRKLSDHTLRAYAHELGEL--------RKLANGRPLESLTAVDMRGAV 55

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++     +  RS+   LS  ++F ++  +      + +  +R  K++ +LP+AL+   A 
Sbjct: 56  ARAHAGGLSARSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDAA 115

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-----------MDD 184
            L+D     T+        R+ AIL L Y  GLR++E + L  +                
Sbjct: 116 ALMDAPTAGTAE-----HLRDHAILELFYSSGLRLAELIGLDVEYTKDGDYRSEGWLDLA 170

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           ++ + ++GKG+K R VP+      A+  +  +    +  + + PLF  +RG  ++PGV +
Sbjct: 171 EAEVTVRGKGEKERKVPVGRKAIDALNAWLAVRGEFVKRDAR-PLFLSVRGNRMSPGVVR 229

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  +S TQ+YT+++ +
Sbjct: 230 ERVKRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQ 289

Query: 305 NGGDWMMEIYDQTHPSITQKD 325
           +    + +IYD  HP   ++D
Sbjct: 290 H----LAKIYDSAHPRAKKRD 306


>gi|282859943|ref|ZP_06269031.1| tyrosine recombinase XerD [Prevotella bivia JCVIHMP010]
 gi|282587346|gb|EFB92563.1| tyrosine recombinase XerD [Prevotella bivia JCVIHMP010]
          Length = 310

 Score =  246 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 85/312 (27%), Positives = 153/312 (49%), Gaps = 16/312 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + + L++E+G S+ T+ +Y  D  +   +L      K     +  +   ++  F + 
Sbjct: 12  VRKFRRYLKLEKGHSENTVDAYMHDIEKLSSYL------KAEKVDVLDVKLDDLEHFAAS 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                IG RSL R LSG++ F ++L             + + K+   LP  L+  +   +
Sbjct: 66  ISEIGIGARSLARILSGVRHFYRFLVLDGYLEADPTELLESPKQPQHLPEVLSTAEVDII 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           + ++ L     +KW   RN AI+ +L+ CGLR+SE  +L   N+  D   +R+ GKG K 
Sbjct: 126 LQSIDL-----SKWEGQRNKAIIEMLFSCGLRVSELTNLKLSNLYLDDLYIRVMGKGSKE 180

Query: 198 RIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+ P   + +  +  D     +    +  +F   RG  L   +    +++  +  G+
Sbjct: 181 RLVPISPRAVEELNYWFLDRNQMVIKEGEEDYVFLNRRGAHLTRTMILIMLKRYAKGAGI 240

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HTLRHSFAT LL  G DLRSIQ++LGH  + TT+IYT++++      + +    
Sbjct: 241 KKTISPHTLRHSFATALLEGGADLRSIQAMLGHESVVTTEIYTHIDT----TTLRQEILN 296

Query: 317 THPSITQKDKKN 328
            HP   +  +++
Sbjct: 297 HHPRNIRYREEH 308


>gi|167764388|ref|ZP_02436513.1| hypothetical protein BACSTE_02776 [Bacteroides stercoris ATCC
           43183]
 gi|167697793|gb|EDS14372.1| hypothetical protein BACSTE_02776 [Bacteroides stercoris ATCC
           43183]
          Length = 294

 Score =  246 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 76/303 (25%), Positives = 143/303 (47%), Gaps = 13/303 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L  L  ER  S+ T++ Y  D  +   F     E+ +       +    IR +I   
Sbjct: 5   DSFLDYLLYERNYSEGTVRYYRTDILELQKF----GEKLLGDLAPSDVGVDLIREWIVSL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     ++ R LS ++++ KYL K+ +     +  +   KK   LP  L E +   L+
Sbjct: 61  MDKGYAPNTVNRKLSSVRTYYKYLLKKGLVAADPLRRVTGPKKKKPLPVFLREGEVDRLL 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D          ++   R+  I+ + Y  G+R+SE + L  +++    S +++ GK +K R
Sbjct: 121 D----DVDFGERFEGYRDRLIIEMFYTTGMRLSELIGLDDKDVDFSASLIKVTGKRNKQR 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++P    + +++ EY ++    L +      F    G+ L  G+    +R+    +    
Sbjct: 177 LIPFDKELGRSMQEYVNVRNQALPVR-SDAFFVRKNGERLGRGIVAYIVRRNLSKVVTVK 235

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FAT +L+NG DL SI+ +LGH  L+TT++YT+   +     + ++Y+Q H
Sbjct: 236 KRSPHVLRHTFATAMLNNGADLSSIKELLGHESLATTEVYTHTTFEE----LKKVYNQAH 291

Query: 319 PSI 321
           P  
Sbjct: 292 PRA 294


>gi|291004130|ref|ZP_06562103.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
          Length = 301

 Score =  246 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 85/306 (27%), Positives = 141/306 (46%), Gaps = 9/306 (2%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                + ++L+ ERGLS  T+++Y  D    L       EE+   + +  L  T +R ++
Sbjct: 3   AAVDGFERHLKAERGLSAHTVRAYIGDVVSLLDHFCAGDEER---KGLNGLGLTVLREWL 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           + +        +L R  +  ++F  +  + ++        +        LP  L  +QA 
Sbjct: 60  AAQHADGASRSTLARRAASARTFTAWAHRAELLPHDPGPRLAAPAPKRKLPTVLRAEQAK 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           + +         +   I  R+ A++ LLY  G+R+SE   L   ++  ++  +R+ GKGD
Sbjct: 120 SAMSASQAGA-EQGDPIALRDHAVVELLYATGVRVSELCGLDLDDVDHERRVVRVIGKGD 178

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K R VP       A+  +      +L  +   P LF G RG  L+P   +R +      +
Sbjct: 179 KERAVPFGVPAEDAVSRWISAGRPELATDASGPALFLGARGGRLDPRAVRRVVHDAVGAV 238

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
                   H LRHS ATHLL  G DLRS+Q +LGH  L+TTQ+YT+V  +     +  I+
Sbjct: 239 SGATDVGPHGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTHVTVER----LKAIH 294

Query: 315 DQTHPS 320
           D+THP 
Sbjct: 295 DRTHPR 300


>gi|256819226|ref|YP_003140505.1| tyrosine recombinase XerD [Capnocytophaga ochracea DSM 7271]
 gi|315224660|ref|ZP_07866483.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287]
 gi|256580809|gb|ACU91944.1| tyrosine recombinase XerD [Capnocytophaga ochracea DSM 7271]
 gi|314945288|gb|EFS97314.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287]
          Length = 303

 Score =  246 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 93/303 (30%), Positives = 155/303 (51%), Gaps = 16/303 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++   L ++RGLS+ T+ SY  D  + + +L  Y       +    +    +R F+    
Sbjct: 8   DYQNYLRLQRGLSQNTVVSYGLDIEKLIGYLEKYNI----TEPPDTIQVDTLRQFV-YEV 62

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           ++++  RS  R +S +KSF K++   K   +  +  + + K    LP  L+ K+   ++ 
Sbjct: 63  SKELNARSQARLISALKSFFKFMISEKGREDFPMSLIDSPKIGVKLPDTLSLKEIDAMLA 122

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           ++ L T         RN AI+  LYGCGLR+SE +SL   ++  ++  +R+ GKG K R+
Sbjct: 123 SIDLSTDE-----GHRNKAIIETLYGCGLRVSELVSLRLSDLFFEEDFIRVMGKGSKQRL 177

Query: 200 VPLLPSVRKAILEYYDLCPFDLN--LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           VP+    +K I  Y +     L      +  +F   RGK L   +    +RQ+   +GL 
Sbjct: 178 VPIESYTQKQINNYINNQRKQLKIAKGHEDYVFLNRRGKQLTRAMIFTIVRQVAENIGLQ 237

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + + HT RHSFATHLL NG +LR+IQ +LGH  ++TT+IY +V       ++ E   + 
Sbjct: 238 KTISPHTFRHSFATHLLENGANLRAIQMMLGHENITTTEIYVHV----EKSYLREALVKY 293

Query: 318 HPS 320
           HP 
Sbjct: 294 HPR 296


>gi|293570278|ref|ZP_06681347.1| tyrosine recombinase XerC [Enterococcus faecium E980]
 gi|291609685|gb|EFF38946.1| tyrosine recombinase XerC [Enterococcus faecium E980]
          Length = 301

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 99/308 (32%), Positives = 153/308 (49%), Gaps = 19/308 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L+ L +ERG S+ T ++YE D   F  FL     E+     + +  Y  +R ++S  
Sbjct: 8   QKFLRYLIVERGYSEKTKEAYEEDILHFKHFL-----EESGDADLLKAEYFTVRVYLSAL 62

Query: 79  RTQK--IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              +      S+ R ++ ++SF +YL K ++  E+    +   KK+  LPR   E +   
Sbjct: 63  ADHRPSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQA 122

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L D+V          +D RN A+L +LYG G+R+SE  +L   +I  D   + I GKG+K
Sbjct: 123 LFDSV-----AGDSPLDLRNRALLEVLYGSGIRLSECSNLLVSDIDFDSEVMLIHGKGNK 177

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            R  PL    + A+ EY+      L          +F    GKP+ P   +  + Q+ + 
Sbjct: 178 ERYAPLGSFAQDALQEYFTEGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQMIKK 237

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRH+FATHLL+NG DLR++Q +LGH  LSTTQIY +V  ++    + + 
Sbjct: 238 SSLDSDIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKES----LQKN 293

Query: 314 YDQTHPSI 321
           Y   HP  
Sbjct: 294 YRSFHPRA 301


>gi|329942671|ref|ZP_08291450.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila
           psittaci Cal10]
 gi|332287266|ref|YP_004422167.1| site-specific tyrosine recombinase [Chlamydophila psittaci 6BC]
 gi|313847852|emb|CBY16846.1| putative integrase/recombinase [Chlamydophila psittaci RD1]
 gi|325506606|gb|ADZ18244.1| site-specific tyrosine recombinase [Chlamydophila psittaci 6BC]
 gi|328814931|gb|EGF84920.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila
           psittaci Cal10]
 gi|328914512|gb|AEB55345.1| site-specific recombinase, phage integrase family [Chlamydophila
           psittaci 6BC]
          Length = 312

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 93/319 (29%), Positives = 147/319 (46%), Gaps = 22/319 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-------------EKITI 60
           ++     +L  L+  +  S  TL++Y  D   F  FL  + E              +   
Sbjct: 1   MVSAFYAFLDYLKNIKTASPHTLRNYCIDLNDFKNFLEKHGELTPSPPICLVTKERQEAE 60

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
                L+   +R +I K   +    R++KR LS IKSF +Y  K +I  E     ++  +
Sbjct: 61  LPFSLLTKDAVRLYILKLMQENKAKRTIKRRLSAIKSFSQYCVKHRILPEDPTETIQGPR 120

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LP  +  +Q   L+      T   +K+   R+  +L L Y  GLRISE +++   +
Sbjct: 121 LPKELPSPITYEQVEILM-----ATPDLSKYTGFRDRCLLELFYSSGLRISEIVAINHWD 175

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I      +RI+GKG K R+VP+ P   + + +Y               +F    GK L  
Sbjct: 176 IDFTSHLIRIRGKGKKERLVPMTPHAAQWLQQYLTHPARTGIEKDSQAIFLNRFGKRLTT 235

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               R  ++  R  GL  + T HT+RH+ ATH L NG DL++IQ++LGH  L TT IYT+
Sbjct: 236 RSIDRKFQKYLRQSGLSGNITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTH 295

Query: 301 VNSKNGGDWMMEIYDQTHP 319
           V+ K       + +D++HP
Sbjct: 296 VSMKLK----KQTHDESHP 310


>gi|159037538|ref|YP_001536791.1| site-specific tyrosine recombinase XerD [Salinispora arenicola
           CNS-205]
 gi|157916373|gb|ABV97800.1| tyrosine recombinase XerD [Salinispora arenicola CNS-205]
          Length = 345

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 87/322 (27%), Positives = 146/322 (45%), Gaps = 21/322 (6%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
             L    + +L +L +ERGL+  TL SY  D  ++L  LA      + +  +  +   ++
Sbjct: 31  PALQHAVRGYLDHLAVERGLAANTLASYRRDLGRYLDTLA-----SVGVTELASVDPGQV 85

Query: 72  RAFISKRRTQKIGDRSLKRSLSG-----IKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
              +++ R    G   L  S +      ++   ++  +  +       ++R       LP
Sbjct: 86  EVHLARLRAGDDGHPPLAASSAARAASAVRGLHRFALREGLAGVDPSRDLRPAAPPRRLP 145

Query: 127 RALNEKQALTLVDNV-LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           RAL     L L++    +  + +   +  R+ A+L  LYG G RISEA+ +   ++  D 
Sbjct: 146 RALPVDDVLKLLEAAGSVAATGDGAPLALRDRALLEFLYGTGARISEAVGVAVDDLDTDT 205

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVF 243
             + ++GKG + R+VP+      A+  Y       L         +F   RG PL+    
Sbjct: 206 GAVLLRGKGGRNRLVPIGGYAVAALRGYLVRARPGLAAAGRGTPAVFLNARGGPLSRQGA 265

Query: 244 QRYIRQLRRYLGLP----LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
              +R   R  GLP     + + HTLRHS+ATHLL  G D+R +Q +LGH  ++TTQ+YT
Sbjct: 266 WAILRGAARRAGLPGVGAEAVSPHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQVYT 325

Query: 300 NVNSKNGGDWMMEIYDQTHPSI 321
            V  +     + E+Y   HP  
Sbjct: 326 MVTVQR----LREVYATAHPRA 343


>gi|150003451|ref|YP_001298195.1| integrase [Bacteroides vulgatus ATCC 8482]
 gi|254881251|ref|ZP_05253961.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|294777667|ref|ZP_06743118.1| tyrosine recombinase XerD [Bacteroides vulgatus PC510]
 gi|319640253|ref|ZP_07994978.1| integrase [Bacteroides sp. 3_1_40A]
 gi|149931875|gb|ABR38573.1| integrase [Bacteroides vulgatus ATCC 8482]
 gi|254834044|gb|EET14353.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|294448735|gb|EFG17284.1| tyrosine recombinase XerD [Bacteroides vulgatus PC510]
 gi|317388028|gb|EFV68882.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 313

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 91/311 (29%), Positives = 148/311 (47%), Gaps = 17/311 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            + Q L++E+ LS  T+ +Y  D  + L +L     E I I  +R      +  F +   
Sbjct: 13  KYKQYLKLEKSLSDNTVDAYLTDLDKLLAYLTL---ENINILDVR---LENLEDFSAGLH 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              I  RS  R LSGI+SF ++L             + + +    LP  +  ++   L+ 
Sbjct: 67  DIGIHPRSQARILSGIRSFYRFLIMEDYLKADPTELLESPQTGFKLPEVMTVEEIDLLI- 125

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                +   +     RN AIL  LY CGLR+SE  +L    +  ++  ++++GKG K R+
Sbjct: 126 ----GSIDRSTKEGQRNRAILETLYSCGLRVSELCNLKLSELYFEEGFIKVEGKGSKQRL 181

Query: 200 VPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+ P   K I  Y+       +    +  +F    GK ++  +    I++L   +GL  
Sbjct: 182 VPISPRAIKEIRLYFTDRNLMKIKPGFEDFVFISNFGKNISRIMVFHIIKELAARIGLKK 241

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HT RHSFATHLL  G +LR+IQ +LGH  + TT+IYT+++       ++E     H
Sbjct: 242 KISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHIDRNMLRSEIIE----HH 297

Query: 319 PS-ITQKDKKN 328
           P  I  ++K N
Sbjct: 298 PRNIKFREKDN 308


>gi|225677009|ref|ZP_03788023.1| site-specific recombinase, phage integrase [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
 gi|225590948|gb|EEH12161.1| site-specific recombinase, phage integrase [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
          Length = 310

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 111/314 (35%), Positives = 173/314 (55%), Gaps = 7/314 (2%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L    + W + L   R  S  TL+SY  D +  + FL  +   ++ + T+ +LS  E+R
Sbjct: 2   DLGSIIEKWYEWLRCNRSYSPNTLESYMRDLKDLISFLNTHIGGEVNVGTLEKLSVPELR 61

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           ++++ R  + +  RS  R+LS I++F KY+K         + ++    +  +LP+AL+  
Sbjct: 62  SWLTSRYARGVNARSNARALSVIRNFFKYIKNNYNIDNEAVFSLSRPIQRRTLPKALSIP 121

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
              TL+  + L    E+ W+  R  AI+ LLY  GLRISEAL+L   +I ++  +L + G
Sbjct: 122 NIKTLLKEMKLSDLGES-WVVKREIAIIVLLYSTGLRISEALNLRVSDINNE--SLIVTG 178

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KGDK R V +LP V+K I EY   CP+    +    LF G+RGK L        ++++RR
Sbjct: 179 KGDKQRQVFILPVVKKCIQEYVKTCPYLGINDEAQYLFLGVRGKKLGRTYVANRLQKIRR 238

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            L LP   + H  RHSFATHLL    D+RSIQ +LGH  L TTQ+YT++N ++  +    
Sbjct: 239 ILNLPEILSPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQVYTHLNYQDVFN---- 294

Query: 313 IYDQTHPSITQKDK 326
           +Y     S+ +K K
Sbjct: 295 MYKNFQQSLEKKPK 308


>gi|332526676|ref|ZP_08402778.1| tyrosine recombinase XerD subunit [Rubrivivax benzoatilyticus JA2]
 gi|332111079|gb|EGJ11111.1| tyrosine recombinase XerD subunit [Rubrivivax benzoatilyticus JA2]
          Length = 310

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 147/304 (48%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              ++  L IE GL+ LTL +Y  D   +  +LA    ++     +      ++ A+I++
Sbjct: 21  IDRFVDALWIEDGLAPLTLAAYRRDLTLYAGWLARRHAKR-----LDDSREADLLAYIAE 75

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R T      +  R L+  K + ++  +  +      L +++ ++   +P++L+E+Q   L
Sbjct: 76  RHTATRA-TTANRRLTVFKRYFRWALREHLVAADPTLRLQSARQPLRVPKSLSERQVEAL 134

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +             +  R+ A+L L+YG GLR+SE + L   ++   +  LR+ GKG K 
Sbjct: 135 L-----AAPETDTALGLRDRAMLELMYGSGLRVSELVGLKSVHLGLAEGVLRVVGKGSKE 189

Query: 198 RIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVP        +  Y        L       LF   RG  +    F   +++  R  G+
Sbjct: 190 RIVPFGEEAHGWLQRYLGEARAAILGGQASDALFVTARGGAMTRQAFWLLVKKYARAAGI 249

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            +  + HTLRH+FATHLL++G DLR++Q +LGH  + TT IYT+V  +     + +++ +
Sbjct: 250 LVPLSPHTLRHAFATHLLNHGADLRAVQMLLGHADIGTTTIYTHVARER----LRQLHAR 305

Query: 317 THPS 320
            HP 
Sbjct: 306 HHPR 309


>gi|302338071|ref|YP_003803277.1| integrase family protein [Spirochaeta smaragdinae DSM 11293]
 gi|301635256|gb|ADK80683.1| integrase family protein [Spirochaeta smaragdinae DSM 11293]
          Length = 313

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 94/331 (28%), Positives = 159/331 (48%), Gaps = 26/331 (7%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +PE    E+      +L+ L   R LS  T+ +Y  D  +F  F+    +E   +    +
Sbjct: 1   MPETEKSEIRSLVDTYLRYLVAVRTLSPRTVDAYGVDLDRFCRFVE---DEGCGL----E 53

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           LS + +R F+++ +   +   S  R+LS I+ F +Y  K+     +   ++R   +   L
Sbjct: 54  LSPSLVRRFVAELKDA-LSPASCARALSSIRGFYRYAVKQGAAVSNPFASVRGKGRERRL 112

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P  L+E +A  L+      +  E  +I  R+  ++ LLY  G R+SEA+ +   +I   +
Sbjct: 113 PEVLSEVEASELL------SFSENGFIGVRDKLLMELLYSTGARVSEAVGIDMLDIDTKK 166

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGV 242
            T+++ GKGD+ RI  L P    A+  Y       +  + +     LF    G+ L    
Sbjct: 167 RTVKLLGKGDRQRIAYLGPQAMSALAAYLPYRRERVASDKKDAVQALFLNAHGERLTRRG 226

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               +R+ +  L        H  RHSFATHLL  G D+R++Q +LGH  LSTT IYT+V+
Sbjct: 227 AGFILRKHQERLASGKRLHPHLFRHSFATHLLDRGADIRTVQELLGHADLSTTGIYTHVS 286

Query: 303 SKNGGDWMMEIYDQTHP-----SITQKDKKN 328
            K     + ++Y   HP     S+ +K++K+
Sbjct: 287 LKR----LQDVYRNAHPHGSTGSVGKKEQKS 313


>gi|120403198|ref|YP_953027.1| site-specific tyrosine recombinase XerC [Mycobacterium vanbaalenii
           PYR-1]
 gi|119956016|gb|ABM13021.1| tyrosine recombinase XerC subunit [Mycobacterium vanbaalenii PYR-1]
          Length = 319

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 143/305 (46%), Gaps = 10/305 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + + L +ERG S+ T ++Y  D R    FLA    E+     +R L+   +R++++ 
Sbjct: 24  LEEFDEYLALERGRSEHTRRAYLGDVRALFDFLA----ERRPGTGLRGLTLPVLRSWLAA 79

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           + T      +L R  S +K+F  +  +R + TE     ++  K   +LP  L + QA   
Sbjct: 80  QATAGAARSTLARRTSAVKTFTAWAVRRGLMTEDPAARLQVPKARRTLPSVLRQDQAREA 139

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D        +   +  R+  I+ +LY  G+R+SE   L   ++   +  LR+ GKG+K 
Sbjct: 140 MDAAKSGA-QQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTARRLLRVLGKGNKQ 198

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R VP       A+  +  D  P  +       L  G RG  L+P   +  + Q    +  
Sbjct: 199 RTVPYGDPAHAALTAWLSDGRPALVTAGSGAALLLGARGGRLDPRQARTVVHQTMAAVSG 258

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V        +  ++DQ
Sbjct: 259 APDIGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVTVAR----LRAVHDQ 314

Query: 317 THPSI 321
            HP  
Sbjct: 315 AHPRA 319


>gi|209542780|ref|YP_002275009.1| site-specific tyrosine recombinase XerC [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530457|gb|ACI50394.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 324

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 113/324 (34%), Positives = 168/324 (51%), Gaps = 27/324 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           R  +L  +  ER  S LT+ +Y  D  +FL F+  +    + +  + +LS  ++RA+++ 
Sbjct: 7   RDAFLDWMRDERRASPLTIAAYRGDLDRFLDFIGAHVGGTVDLAVLDRLSLADLRAWLAF 66

Query: 78  RRTQK--IGDRSLKRS-------------LSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
              Q   +  R   RS             +S ++SF +YL +R   T      +   +  
Sbjct: 67  EHAQGHALAQRDRGRSSTPDRAARTRARRVSAMRSFYRYLARRHGVTNPAPGLLAAPRTK 126

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           + LPR L+E QAL + D   +     T    AR++A+  LLYGCGLRISEAL L  +++ 
Sbjct: 127 SPLPRPLSEAQALDVPDG--VGDLAVTPLGQARDAALFLLLYGCGLRISEALGLDVRDLD 184

Query: 183 DD---QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
                  TL ++GKG + R+VP+LP+V + + ++    P  L      PLF G+RG  L 
Sbjct: 185 HALSAGGTLLVRGKGGRERLVPILPAVARVLTDWRARHPAPL---PDAPLFPGVRGGRLQ 241

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           P V QR +R  R   GLP   T H LRHSFATHL+  G DLR+IQ +LGH  LSTTQ YT
Sbjct: 242 PAVAQRAMRAWRDMAGLPDHATPHALRHSFATHLMEGGADLRTIQELLGHASLSTTQRYT 301

Query: 300 NVNSKNGGDWMMEIYDQTHPSITQ 323
             +       + E++ + HP   +
Sbjct: 302 LADEAR----LTEVWTRAHPRAAR 321


>gi|317476381|ref|ZP_07935630.1| tyrosine recombinase XerC [Bacteroides eggerthii 1_2_48FAA]
 gi|316907407|gb|EFV29112.1| tyrosine recombinase XerC [Bacteroides eggerthii 1_2_48FAA]
          Length = 294

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 80/303 (26%), Positives = 144/303 (47%), Gaps = 13/303 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L  L  ER  SK T++ Y+ D  +   F     EE +   T   +    IR +I+  
Sbjct: 5   DSFLDYLLYERNYSKGTVRYYQADILELQKF----GEELLGDLTPSDVDAGLIREWITSL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     ++ R LS ++S+ KYL ++ +     +  +   KK   LP  L E     L+
Sbjct: 61  MDRGCAPNTVNRKLSSVRSYYKYLLRKGMVAADPLQKITGPKKKKPLPVFLREGDVNRLL 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D           +   R+  I+ + Y  G+R+SE + L  ++I    S +++ GK +K R
Sbjct: 121 D----DVDFGEGFEGCRDRLIIEMFYVTGMRLSELIGLDDKDIDFSASLIKVTGKRNKQR 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++P    +R ++ EY ++    L +      F    G+ LN  +    +++    +    
Sbjct: 177 LLPFDEELRCSMQEYVNVRNQALPVR-SDAFFIRKTGERLNRSIVAYIVKRNLSKVVTVK 235

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FAT +L+NG DL SI+ +LGH  L+TT++YT+   +     + ++Y+Q H
Sbjct: 236 KRSPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEE----LKKVYNQAH 291

Query: 319 PSI 321
           P  
Sbjct: 292 PRA 294


>gi|194288692|ref|YP_002004599.1| site-specific tyrosine recombinase xerd [Cupriavidus taiwanensis
           LMG 19424]
 gi|193222527|emb|CAQ68530.1| site-specific tyrosine recombinase [Cupriavidus taiwanensis LMG
           19424]
          Length = 312

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 87/303 (28%), Positives = 137/303 (45%), Gaps = 17/303 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +   L +E GLS+ T+ +Y  D      +L      +     +       + A+ S R 
Sbjct: 24  RFCDALWLEDGLSRNTIDAYRRDLTLLARWLQHEQRGE-----LLDADDGALSAYFSARH 78

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           TQ     S  R L+  + F ++  +  +      L +R  K+    P+ L+E Q   L++
Sbjct: 79  TQTRA-SSANRRLAVFRRFYQWALREHLVQVDPCLLLRPAKQPPRHPKTLSEAQVEALLE 137

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIR 198
                       +  R+  +L L+Y  GLR+SE   +    I  ++   R+ G KGDK R
Sbjct: 138 -----APDTETPLGLRDRTMLELMYASGLRVSELTQMKTVEIGLNEGVARVVGGKGDKER 192

Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP        +  Y     P  L       LF   RG+ +    F   I++  R  G+ 
Sbjct: 193 LVPFGQQAGDWLRRYLASARPVLLAGRACDALFVTQRGEGMTRQAFWHLIKRHARDAGVH 252

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     + E++ Q 
Sbjct: 253 APLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER----LRELHQQH 308

Query: 318 HPS 320
           HP 
Sbjct: 309 HPR 311


>gi|258654185|ref|YP_003203341.1| tyrosine recombinase XerD [Nakamurella multipartita DSM 44233]
 gi|258557410|gb|ACV80352.1| tyrosine recombinase XerD [Nakamurella multipartita DSM 44233]
          Length = 353

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 97/357 (27%), Positives = 148/357 (41%), Gaps = 47/357 (13%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           E    P   S EL+   + +L +L +ERG+++ T+ SY  D  ++L FLA          
Sbjct: 8   EAVASPVEPSPELVAALRGYLDHLVVERGVARNTVLSYRRDLNRYLQFLAAAGR-----T 62

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK-----SFLKYLKKRKITTESNILNM 116
            +  ++  ++  F+   RT   G   L  S +         + ++L            ++
Sbjct: 63  RVADVTAADVSDFLVCLRTGADGRPPLAASSAARAVVAARGWHRFLLNEGTAEADPSRDV 122

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
                +  LP+AL  +    L+D     ++        R+ A+L LLY  G RISE + L
Sbjct: 123 HPPTPARRLPKALPVEAIGRLLDA--AGSADPDGPRGLRDRALLELLYATGARISEVVGL 180

Query: 177 TPQNIMDDQS------------------------TLRIQGKGDKIRIVPLLPSVRKAILE 212
              +I                              +R+ GKG K R+VP+     +A+  
Sbjct: 181 DVDDIDLGPGRLAGRSSTDPTDPTDPQVAPPITSVVRLHGKGAKERLVPVGSFALRALEA 240

Query: 213 YYDLCPFDLNLNIQLP------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-STTAHTL 265
           Y       L    +        LF  IRG  L+     + +    R  GLP    + HTL
Sbjct: 241 YLVRGRPVLAAAGRGAGPARGALFLNIRGGRLSRQSAWQVLADAARRAGLPASGVSPHTL 300

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           RHSFATHLL  G D+RS+Q +LGH  ++TTQIYT V      D + E+Y   HP   
Sbjct: 301 RHSFATHLLEGGADVRSVQELLGHASVTTTQIYTLVT----VDALREVYVTAHPRAR 353


>gi|319778943|ref|YP_004129856.1| Tyrosine recombinase XerC [Taylorella equigenitalis MCE9]
 gi|317108967|gb|ADU91713.1| Tyrosine recombinase XerC [Taylorella equigenitalis MCE9]
          Length = 315

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 93/328 (28%), Positives = 162/328 (49%), Gaps = 29/328 (8%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + K  + WLQ+L  E+  S  T+ +Y+ D +  +             + + +L+  ++R 
Sbjct: 1   MSKYVEQWLQSLVTEKNSSPHTVAAYKRDLQHLIDIF--------PEKDLSKLNNMDVRQ 52

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            I+   ++    RSL R LS  ++F K+   +     +  L ++  K +  LP+AL   +
Sbjct: 53  AIATLHSRDFNPRSLTRILSSWRNFYKWYSLKYELDINPTLGIKAPKVARPLPKALTADE 112

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-----------M 182
           A  L+D  L   + +   + AR+ A+  LLY  GLR+SE ++L  +              
Sbjct: 113 AKLLLDVGL--QTDDNSAVHARDQAMFELLYSSGLRLSELVNLDIEYHKSQDHVSKGWLD 170

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL----PLFRGIRGKPL 238
            +   L + GKG+K RIVPL     +AIL + +                 LF G +GK +
Sbjct: 171 INNHELTVIGKGNKPRIVPLGEKAEEAILHWLNRRIELEGPKTSASDKCALFLGAQGKRI 230

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +  V Q  +++L     +P +   H LRHSFA+H+L +  DLR++Q +LGH ++STTQ+Y
Sbjct: 231 STRVVQLQLKKLALKTNIPSNIHPHVLRHSFASHILQSSQDLRAVQDLLGHSKISTTQLY 290

Query: 299 TNVNSKNGGDWMMEIYDQTHPSITQKDK 326
           T ++ ++    + E YD+ HP   +K +
Sbjct: 291 TRLDFQH----LSEAYDKAHPRAKKKPR 314


>gi|262373947|ref|ZP_06067224.1| tyrosine recombinase XerD [Acinetobacter junii SH205]
 gi|262310958|gb|EEY92045.1| tyrosine recombinase XerD [Acinetobacter junii SH205]
          Length = 306

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 91/320 (28%), Positives = 149/320 (46%), Gaps = 19/320 (5%)

Query: 2   EGNNLPEIVS-FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           +   +P  V   E L     +   L  +  +S  T  +Y  D  Q               
Sbjct: 4   KKPRIPAAVKIPEHLSFLHGFRDYLVAQ-TVSPHTRNAYLSDLIQCSDLHDTVV------ 56

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             + + S  +I   +          RS+ R LS ++ F K+L+++K+  ++ +   ++ K
Sbjct: 57  --LTEWSSDDIADVLIVLTKHGKSPRSIARCLSALRQFFKFLREQKLRDDNPVATHQSPK 114

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
              +LP+ L+E     L+     +    +  +  R+ A+L +LY CGLR++E L+L  + 
Sbjct: 115 IGRALPKDLSEHDVEALI-----NAPDISTALGLRDRAMLEVLYACGLRVTELLNLRLEL 169

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I   Q  LRI GKG+K R+VPL     + + +Y       L  +    LF    G  ++ 
Sbjct: 170 INLKQGFLRITGKGNKERLVPLGQYACEWVEKYLSESRPQLYKSNTDYLFLTQHGGIMSR 229

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             F   I++      +    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+
Sbjct: 230 QNFWYAIKRYALQANISAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTH 289

Query: 301 VNSKNGGDWMMEIYDQTHPS 320
           V        M E++ + HP 
Sbjct: 290 VAQ----HRMQELHSKHHPR 305


>gi|222112165|ref|YP_002554429.1| tyrosine recombinase xerc [Acidovorax ebreus TPSY]
 gi|221731609|gb|ACM34429.1| tyrosine recombinase XerC [Acidovorax ebreus TPSY]
          Length = 323

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 89/332 (26%), Positives = 152/332 (45%), Gaps = 28/332 (8%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
            V+  L  E   +L+++ +E+ L+  TL  Y  D ++     A           + +L+ 
Sbjct: 5   PVALHLPPEALQYLEHVRVEKRLAARTLTLYTLDLQRLAAMAAGVD------LPLLRLTS 58

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             IR F+++        R +   LSG + F  +  ++ +   + + ++R  K    LP+A
Sbjct: 59  AHIRRFVAQMHAGGRSGRGIALILSGWRGFYTWAARQGLVPHNPVQDVRAPKAPKPLPKA 118

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP---------- 178
           L   +A+ L ++          W++AR++AI+ LLYGCGLR+ E + L            
Sbjct: 119 LPVDEAVRLAEHQETGA---DPWLEARDAAIVELLYGCGLRVGELVGLDVAPSPAAHQQG 175

Query: 179 -QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGI 233
              +        + GKG K R VP+  +   A+  +               ++  LF G 
Sbjct: 176 RGWVDLQAGEAHVFGKGSKRRSVPVGRAAAAALQAWLAQRALPFGAAGAARLEPALFIGR 235

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           RG  L        +RQ  +  GL      H LRHSFA+HLL + GDLR++Q +LGH  ++
Sbjct: 236 RGARLTAQSVWLRLRQRSQVAGLTTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANIT 295

Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           TTQ+YT ++ ++    +  +YD  HP   +K 
Sbjct: 296 TTQVYTRLDFQH----LARVYDAAHPRARRKP 323


>gi|121593407|ref|YP_985303.1| tyrosine recombinase XerD [Acidovorax sp. JS42]
 gi|222110117|ref|YP_002552381.1| tyrosine recombinase xerd [Acidovorax ebreus TPSY]
 gi|120605487|gb|ABM41227.1| tyrosine recombinase XerD [Acidovorax sp. JS42]
 gi|221729561|gb|ACM32381.1| tyrosine recombinase XerD [Acidovorax ebreus TPSY]
          Length = 303

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 77/305 (25%), Positives = 141/305 (46%), Gaps = 15/305 (4%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
               ++  L +E GLS+ TL +Y  D   +  +LA           +   +   ++ + +
Sbjct: 12  AIDPFIDALWLEDGLSRNTLAAYRRDLTLYAQWLAQQNP----PLALDATAEHHLQGYFA 67

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            R  Q     S  R L+ ++ +  +  + +       + ++  ++   +P+ L + Q   
Sbjct: 68  ARHAQTRA-TSANRRLTVLRRYFHWALRERRIAADPTVRLQAARQPLRVPKTLTQAQVEA 126

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+     H   +   +  R+  +L L+Y  GLR+SE ++L   ++   +  LR+ GKG K
Sbjct: 127 LL-----HAPDDATPLGLRDRTMLELMYASGLRVSELVTLKTFHLGLAEGVLRVMGKGGK 181

Query: 197 IRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R+VP      + +  Y        L       LF   RG  ++  +F   +++  +  G
Sbjct: 182 ERLVPFGEEAHRWLQRYLAEGRGAILGGQQTDDLFVTQRGAAMSRVMFWVIVKKCAQAAG 241

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + HTLRH+FATHLL++G DLR +Q +LGH  +STT IYT+V  +     +  ++ 
Sbjct: 242 ITAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARER----LKALHA 297

Query: 316 QTHPS 320
           Q HP 
Sbjct: 298 QHHPR 302


>gi|307730818|ref|YP_003908042.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1003]
 gi|307585353|gb|ADN58751.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1003]
          Length = 314

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 137/304 (45%), Gaps = 17/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +   L +E GLS+ TL +Y  D R F  +LA          ++   S  ++ A+ + 
Sbjct: 26  LDAFCDALWLEHGLSRNTLDAYRRDLRLFSEWLAQSRN-----ASLDTASEADLNAYSAV 80

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  QK    S  R LS  + +  +  +         L +R+ K+    P  L+E Q   L
Sbjct: 81  R--QKDKSTSANRRLSVFRRYYGWAVREHRAQVDPTLRIRSAKQPPRFPSTLSEAQVEAL 138

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +             +  R+  +L L+Y  GLR++E ++L    +  ++  +R+ GKG K 
Sbjct: 139 L-----GAPDIDTPLGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKE 193

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R++P        I  Y     P  L       LF   R + +    F   I++     G+
Sbjct: 194 RLIPFGEEAHGWIERYLRDARPALLGARAADALFVTNRAEGMTRQQFWNIIKRHAAAAGV 253

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++  
Sbjct: 254 HAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARER----LKSLHAM 309

Query: 317 THPS 320
            HP 
Sbjct: 310 HHPR 313


>gi|300780929|ref|ZP_07090783.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030]
 gi|300532636|gb|EFK53697.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030]
          Length = 294

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 78/310 (25%), Positives = 137/310 (44%), Gaps = 17/310 (5%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            +L +   ++  +  + +G S+ T++ Y  D R                 T    +   +
Sbjct: 2   AQLEEAIDDFADHALLVKGRSEATVKGYRSDLRTLAEV----------APTFDDFTLIAL 51

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           R +++    Q +   ++ R  +  +SF  +  +R          +   + +  LP  +  
Sbjct: 52  RGWLADAMRQGLARSTMARRTAAARSFSTWAYERGYLDSDVAARLVTPQINRHLPDVVTS 111

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            +A  LV+  +           AR+ A+L L+Y  G+R++E   L   ++   Q   R+ 
Sbjct: 112 SRAGELVEAEI--NPDSDGPEAARDRAMLELMYATGMRVAELTGLDVDDVDTKQGLARVT 169

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG+K R+VP       AI E+       ++      LF G RG  ++    +R + +  
Sbjct: 170 GKGNKQRVVPFGERATAAIEEWKTRRTELVSDKSGHALFLGSRGGRIDQRQVRRVVERAA 229

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +  G     + H LRHS ATH+L  G DLR +Q +LGH  L TTQIYT+V+++     + 
Sbjct: 230 QRTG-DTDLSPHALRHSAATHMLEGGADLRVVQELLGHSSLQTTQIYTHVSAQR----LK 284

Query: 312 EIYDQTHPSI 321
            +YDQ HP  
Sbjct: 285 NVYDQAHPRA 294


>gi|168180442|ref|ZP_02615106.1| tyrosine recombinase XerD [Clostridium botulinum NCTC 2916]
 gi|168184537|ref|ZP_02619201.1| tyrosine recombinase XerD [Clostridium botulinum Bf]
 gi|237795269|ref|YP_002862821.1| tyrosine recombinase XerD [Clostridium botulinum Ba4 str. 657]
 gi|182668654|gb|EDT80632.1| tyrosine recombinase XerD [Clostridium botulinum NCTC 2916]
 gi|182672365|gb|EDT84326.1| tyrosine recombinase XerD [Clostridium botulinum Bf]
 gi|229260695|gb|ACQ51728.1| tyrosine recombinase XerD [Clostridium botulinum Ba4 str. 657]
          Length = 291

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 162/304 (53%), Gaps = 17/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +N++++L+ ++ LSK TL++Y  D  +F  F+    E+ +++ T+       I AF+  
Sbjct: 5   IENYIKDLQ-KKNLSKNTLEAYRRDVEKFSEFVRNREEKILSVDTVT------IMAFVQY 57

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            + +     S+ R++  I++F KYL K+ + +E   L     K   ++P+ L+ ++   L
Sbjct: 58  LQREGRATSSIVRNIVSIRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILSVEEVDKL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++      S ++     R+ A+L L+Y  G++I+E L+L   +I    + ++ +G   + 
Sbjct: 118 LN------SPDSSKKGLRDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRE 171

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RI+P+     K +  Y ++ P  +N+     LF  ++G  +    F + I+   +   + 
Sbjct: 172 RIIPIGSYAIKCLKNYLEVRP-AINVYNLDYLFLNLKGTQMTRQGFWKIIKFYAKEAFID 230

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
               ++TLRHSFA HLL NG D++S+Q +LGH  L+ TQIY++++ K+    + E+Y   
Sbjct: 231 KEIDSYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKS---KIAEVYKNA 287

Query: 318 HPSI 321
           HP  
Sbjct: 288 HPRA 291


>gi|255036556|ref|YP_003087177.1| tyrosine recombinase XerD [Dyadobacter fermentans DSM 18053]
 gi|254949312|gb|ACT94012.1| tyrosine recombinase XerD [Dyadobacter fermentans DSM 18053]
          Length = 298

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 145/305 (47%), Gaps = 15/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++   L +ER LS  ++++Y  D  +   +L     +        ++    + AF+  
Sbjct: 6   IKHFKNYLRLERSLSGNSVEAYVRDVEKLEEYLELSKAD----LAPARVQEEHLSAFLKY 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +   S  R LSGIK+F KYL      TE     + + +    LP  L+ ++  T+
Sbjct: 62  IAELGLAAHSQARMLSGIKAFFKYLLLENEITEDPTELLESPRLPRKLPDVLSYEEIETM 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +  +   T   T+     N AI+ +LY  GLR+SE   L   N   D   LRI GKGDK+
Sbjct: 122 LSAIDHSTPEGTR-----NRAIMEVLYSSGLRVSELTDLQLTNCHFDIGFLRILGKGDKM 176

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLN--IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R+VP+     K    Y D    D+      +  +F   RG  L+  +    I+      G
Sbjct: 177 RLVPIGREAIKYTQIYLDHIRNDIAPQKGSEDIVFLNRRGGQLSRVMIFLMIKDTAEKAG 236

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + + HT RHSFATHL+  G  LR++Q +LGH  ++TT+IYT+++     D++ +I  
Sbjct: 237 IHKNVSPHTFRHSFATHLIEGGASLRAVQEMLGHESITTTEIYTHLD----RDYLRQIIT 292

Query: 316 QTHPS 320
           + HP 
Sbjct: 293 EFHPR 297


>gi|326566125|gb|EGE16282.1| tyrosine recombinase XerD [Moraxella catarrhalis BC1]
          Length = 307

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 86/324 (26%), Positives = 158/324 (48%), Gaps = 22/324 (6%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLE---IERGLSKLTLQSYECDTRQFLIFLAFYTEEK 57
           M  + +P   S  +  +   +L       + RGLS  T  +Y  D R  +         +
Sbjct: 1   MAKSTIPRADSAVIYDDDPEYLSEFRAAMLARGLSIATRNAYSQDVRLCI---------R 51

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           ++   +     +++R  +   +  K  +RS+ R+L+ +  F  +  +     ++   +++
Sbjct: 52  LSDMPVNLWQPSDVRNHLMCLKDAKKSERSIARALASLCQFFLWQIESGYREDNPCESIK 111

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             K   +LP+ L+E++  +L+D         +     R+ A+L +LY CGLR+SE  SL+
Sbjct: 112 TPKLGKTLPKTLSEQEVSSLLD-----APDISSVRGLRDKAMLEVLYACGLRVSELTSLS 166

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGK 236
            +++      L + GKG+K+R++PL      A+ EY  +    L        +F   +G 
Sbjct: 167 LEHLNLTAGWLSVTGKGNKMRLIPLGEYALSALNEYLAVRGSLLIGKKDCQAVFLTEQGG 226

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            +    F   I++     G+  + + HTLRH+FATHL+++G DLRS+Q +LGH  LSTTQ
Sbjct: 227 YMTRHNFWHLIKKYALMAGINTAISPHTLRHAFATHLVNHGADLRSVQLLLGHSDLSTTQ 286

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPS 320
           IYT+V +      +  ++ + HP 
Sbjct: 287 IYTHVATTR----LQNLHAKHHPR 306


>gi|257887688|ref|ZP_05667341.1| phage integrase [Enterococcus faecium 1,141,733]
 gi|257823742|gb|EEV50674.1| phage integrase [Enterococcus faecium 1,141,733]
          Length = 301

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 99/308 (32%), Positives = 153/308 (49%), Gaps = 19/308 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L+ L +ERG S+ T ++YE D   F  FL     E+     + +  Y  +R ++S  
Sbjct: 8   QKFLRYLIVERGYSEKTKEAYEEDILHFKHFL-----EESGDADLLKAEYFTVRVYLSAL 62

Query: 79  RTQK--IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              +      S+ R ++ ++SF +YL K ++  E+    +   KK+  LPR   E +   
Sbjct: 63  ADHRPSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQA 122

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L D+V          +D RN A+L +LYG G+R+SE  +L   +I  D   + I GKG+K
Sbjct: 123 LFDSV-----AGDSTLDLRNRALLEVLYGSGIRLSECSNLLVSDIDFDSEVMLIHGKGNK 177

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            R  PL    + A+ EY+      L          +F    GKP+ P   +  + Q+ + 
Sbjct: 178 ERYAPLGSFAQDALQEYFTEGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQIIKK 237

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRH+FATHLL+NG DLR++Q +LGH  LSTTQIY +V  ++    + + 
Sbjct: 238 SSLDSDIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKES----LQKN 293

Query: 314 YDQTHPSI 321
           Y   HP  
Sbjct: 294 YRSFHPRA 301


>gi|222529770|ref|YP_002573652.1| tyrosine recombinase XerD [Caldicellulosiruptor bescii DSM 6725]
 gi|312622005|ref|YP_004023618.1| tyrosine recombinase xerd [Caldicellulosiruptor kronotskyensis
           2002]
 gi|222456617|gb|ACM60879.1| tyrosine recombinase XerD [Caldicellulosiruptor bescii DSM 6725]
 gi|312202472|gb|ADQ45799.1| tyrosine recombinase XerD [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 291

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 79/308 (25%), Positives = 143/308 (46%), Gaps = 18/308 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +   + +   L+ +   S+ T+ SY  D ++++ FL     + I I+ +   S T + A+
Sbjct: 1   MSIIEAFGNYLQRQNRFSQNTISSYLRDAKKYIEFL-----DDIKIK-LENTSQTTLIAY 54

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I   +     + ++ R++  +K F ++LK + I     I  +   K   S P+ L   + 
Sbjct: 55  IISMQKGGKSNSTIARAIVSLKVFYEFLKIQDIVDIGKIE-IEPPKLEKSPPQILTRDEV 113

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+         E      R+ A+L LLY  G+R+SE ++L   +I  +   +  + K 
Sbjct: 114 ERLL-----SCPKEDDIKGIRDKAMLELLYATGIRVSELINLNLDDINLEHGYIICKNKK 168

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
              R++P+      A+ +Y     P+      +  LF    G+ +    F + ++   + 
Sbjct: 169 R-DRVIPIGSYAISAVEKYLRHSRPYLAKSKDEEALFLNFSGERMTRQGFWKIVKFYAQN 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    T H LRHSFATHL+ NG D+R++Q +LGH  +STTQ Y  V +      + E+
Sbjct: 228 AKIDKEITPHVLRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVAN----VKLKEV 283

Query: 314 YDQTHPSI 321
           Y +THP  
Sbjct: 284 YQKTHPRA 291


>gi|114776721|ref|ZP_01451764.1| tyrosine recombinase [Mariprofundus ferrooxydans PV-1]
 gi|114552807|gb|EAU55238.1| tyrosine recombinase [Mariprofundus ferrooxydans PV-1]
          Length = 298

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 92/317 (29%), Positives = 149/317 (47%), Gaps = 20/317 (6%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + + +       +LQ L   R  S  T+ +Y  D   F                ++Q++ 
Sbjct: 1   MAAADFRTAVSAYLQELAEVRLASPHTIAAYRRDLGAFGEHCGNIG--------LQQITR 52

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            +++ ++     + +   +L R LS +   L    +  I   +    +R  KKS  LPR 
Sbjct: 53  LQVQDWLVVGHAKGLAAATLARRLSALTGLLDSAVQAGICPANVAAGVRPPKKSARLPRT 112

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L  +Q   L+              D R+ A+L ++YG GLR+SEA+ L   +I      L
Sbjct: 113 LPPEQTAALMQPTHASA-------DRRDLALLAVMYGAGLRVSEAVGLDLHDIDLHSCEL 165

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R+ GKG K RIVPL  +    + ++ D     L +  +  +F    G+ L     QR ++
Sbjct: 166 RVLGKGSKQRIVPLPTTAADLLGQWLDERLLGL-VRDERAVFLNRFGQRLTARSVQRMLK 224

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                 G  +S T H LRHSFATHLL+ G DLR+IQ +LGH  L+TT+ YT+++      
Sbjct: 225 TRALESGADISVTPHRLRHSFATHLLAGGVDLRAIQELLGHASLATTERYTHLD----IA 280

Query: 309 WMMEIYDQTHPSITQKD 325
            + E+YD++HP   ++D
Sbjct: 281 KLTEVYDRSHPRAGRRD 297


>gi|104784270|ref|YP_610768.1| site-specific tyrosine recombinase XerC [Pseudomonas entomophila
           L48]
 gi|123380751|sp|Q1I301|XERC_PSEE4 RecName: Full=Tyrosine recombinase xerC
 gi|95113257|emb|CAK17985.1| site-specific tyrosine recombinase, integrase family [Pseudomonas
           entomophila L48]
          Length = 299

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 83/312 (26%), Positives = 147/312 (47%), Gaps = 17/312 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++ + +  +L  ER +S  TL +Y  D  + + F          I     L   ++R 
Sbjct: 1   MERQLEAYCAHLRNERQVSGHTLLAYRRDLEKVIEFC-----NNQGIAGWDALQVQQLRQ 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            ++++       RSL R LS ++   +YL +  +        +   K    LP+ L+  +
Sbjct: 56  LVARQHHHGQSSRSLARLLSAVRGLYRYLNREGLCQHDPANGLAPPKGERRLPKTLDTDR 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           AL L+D  +     +  +I  R+ AIL L Y  GLR+SE   L  +++      +++ GK
Sbjct: 116 ALQLLDGGV-----DDDFIARRDQAILELFYSSGLRLSELAGLDLEHLDLTGGLVQVLGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R++P+     +A+ E++ L    +       +F   +G  L+    Q  ++     
Sbjct: 171 GGKSRVLPVGRKACEALQEWFRLRG--IAAPRDGAVFITRQGNRLSTRAIQMRVKTFGER 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRHSFA+HLL +  DLR++Q +LGH  +STTQIYT+++ ++    +  +
Sbjct: 229 -ELGQHLHPHMLRHSFASHLLESSQDLRAVQEMLGHADISTTQIYTHLDFQH----LAAV 283

Query: 314 YDQTHPSITQKD 325
           YD  HP   +  
Sbjct: 284 YDSAHPRAKRSK 295


>gi|317508416|ref|ZP_07966086.1| phage integrase [Segniliparus rugosus ATCC BAA-974]
 gi|316253263|gb|EFV12663.1| phage integrase [Segniliparus rugosus ATCC BAA-974]
          Length = 308

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 89/316 (28%), Positives = 145/316 (45%), Gaps = 15/316 (4%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           PE    E+  + +   ++L  ERG S  T+++Y  D R +  F     E       +  +
Sbjct: 5   PEPSISEVFAQYE---RHLRFERGRSPNTVRAYLGDLRAY--FGPARDETAPARDVLGAV 59

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           +  ++R ++S+   +     +L R  SG+K+F ++  +  +      + +   K   +LP
Sbjct: 60  TIADLRGWLSEMTAEGASRATLARRASGMKTFFEWAVRGGLAAHDPTVRLTTPKLRKALP 119

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             L + QA   + +     +     +  R+  +L LLYG G+R+ E   L   ++   + 
Sbjct: 120 HVLRKDQAEQALTS---APAPSDGALLLRDQLVLELLYGTGMRVGELCGLDVDDVDQGRR 176

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQR 245
              + GKGDK R+VP       AI  +       L        L  G RG  L+    +R
Sbjct: 177 LATVLGKGDKQRVVPFGAKASDAISAWLRDGRPKLAGPRSGAALLLGARGGRLDQRTARR 236

Query: 246 YIR-QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            +  ++ R  GLP     H LRHS ATHLL  G DLR +Q ILGH  L+TTQIYT+V+ +
Sbjct: 237 VVHERVAREPGLP-DLGPHGLRHSAATHLLEGGADLRVVQEILGHSSLATTQIYTHVSVE 295

Query: 305 NGGDWMMEIYDQTHPS 320
                +  ++ Q HP 
Sbjct: 296 R----IRAVHSQAHPR 307


>gi|269792633|ref|YP_003317537.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100268|gb|ACZ19255.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 297

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 92/304 (30%), Positives = 155/304 (50%), Gaps = 25/304 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L+ L +ER  S  T Q+Y  D  +++ F A    + +  +         +  F++  
Sbjct: 15  ESFLEYLSLERAFSPNTCQAYRRDLSKYVSFCAERGRDPVPPE------VDTVSLFLASL 68

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R+Q     S++R+ + IKSF ++L       E          K + +P  L E + L L+
Sbjct: 69  RSQGAAKSSVQRAAACIKSFSRFL---GEVGEDPGKVPMLPDKPSPMPAILTEGEVLRLL 125

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +             D R+ A++ LLYGCGLR SE  SLT +++     T+R++GKGDK+R
Sbjct: 126 EATAGDAPG-----DLRDRAMIELLYGCGLRASELCSLTMKDLDLSSGTVRVRGKGDKVR 180

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++PL+   R A+  Y  +         Q P+F+G RG P    +  + I++  R   +  
Sbjct: 181 VLPLVGETRSALERYLKVR-----GTHQGPIFQGDRGGPFRREMLWKMIQRRGRQACIAA 235

Query: 259 -STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRHS ATHLL  G DLR++Q +LGH  + TT++YT+ + +     + ++YD++
Sbjct: 236 SRLHPHILRHSCATHLLRRGMDLRTLQCLLGHSSVRTTEVYTHFDLE-----LRDVYDRS 290

Query: 318 HPSI 321
           HP  
Sbjct: 291 HPRA 294


>gi|218530686|ref|YP_002421502.1| tyrosine recombinase XerD [Methylobacterium chloromethanicum CM4]
 gi|218522989|gb|ACK83574.1| tyrosine recombinase XerD [Methylobacterium chloromethanicum CM4]
          Length = 328

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 85/315 (26%), Positives = 137/315 (43%), Gaps = 22/315 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L  L  ERG +  TL +Y  D   +L +LA             +    ++RA+I+  
Sbjct: 17  QLFLDMLAAERGAAANTLAAYRRDLDDYLGYLAQ------GGIDPEEAQAEQVRAYIASL 70

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   S  R LS I+ F ++L     +       +   +++  LP+ L+  +   L+
Sbjct: 71  EPRGLKASSAARRLSCIRGFHRFLYAEGYSETDPTAPVAAPRRAKGLPKVLSVAEVDRLL 130

Query: 139 -----DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                               AR   +L LLY  GLR+SE ++L        +  L ++GK
Sbjct: 131 ATARERVEAAGDDRAEARAAARMLCLLELLYATGLRVSELVALPRSAAATRERYLVVKGK 190

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRR 252
           G + R+VPL    R+A+  +      +        LF        L    F R ++    
Sbjct: 191 GGRERLVPLTDLAREAMRTHVAHLTAEGAW-----LFPAESESGHLTRQAFARDLKTAAA 245

Query: 253 YLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             GL     + H LRH+FA+HLL NG DLR +Q +LGH  +STTQIYT+V  +     + 
Sbjct: 246 AAGLRTDRVSPHVLRHAFASHLLQNGADLRIVQELLGHADISTTQIYTHVLDERLKGMVR 305

Query: 312 EIYDQTHPSITQKDK 326
           ++    HP   + D+
Sbjct: 306 DL----HPLNDRGDQ 316


>gi|28211202|ref|NP_782146.1| integrase/recombinase [Clostridium tetani E88]
 gi|28203642|gb|AAO36083.1| integrase/recombinase [Clostridium tetani E88]
          Length = 303

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 82/295 (27%), Positives = 165/295 (55%), Gaps = 15/295 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +++GLSK TL +Y  D  +FL FL    E+   I  + +++   I A++   +  +  + 
Sbjct: 24  MDKGLSKNTLDAYIRDVNRFLDFLKEREED---ILDVEEVT---IMAYVQSLQKSRKANS 77

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S+ R++  I++F K+L K+    E  ++N    K   ++P+ L  ++      ++LL+  
Sbjct: 78  SIVRNVVSIRNFYKFLYKKGYIDEDPVINYELPKVKRNIPKVLTVEEV-----DILLNAP 132

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
           + ++    R+ A+L ++Y  G++++E L++T  ++    S ++ +G  +K RI+P+    
Sbjct: 133 NISEEKGIRDKAMLEVMYATGVKVTELLNMTVFDVNLKLSYIKCRGSKNKERIIPIGAYA 192

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              + +Y  + P ++N+     LF  ++G  +    F + +++  +  G+  S  ++TLR
Sbjct: 193 VNCLDDYLSVRP-NINIYNLDYLFLNLKGTQMTRQGFWKIVKKYAKISGIKKSINSYTLR 251

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           HSFA HLL NG D++S+Q +LGH  L+ TQIY+ +++K+    + E+Y +THP  
Sbjct: 252 HSFAVHLLQNGADMKSVQELLGHSDLAATQIYSTISNKS---KIAEVYKKTHPRA 303


>gi|154488853|ref|ZP_02029702.1| hypothetical protein BIFADO_02161 [Bifidobacterium adolescentis
           L2-32]
 gi|154082990|gb|EDN82035.1| hypothetical protein BIFADO_02161 [Bifidobacterium adolescentis
           L2-32]
          Length = 308

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 82/315 (26%), Positives = 149/315 (47%), Gaps = 20/315 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                +   L+  RGLS  T ++Y  D  + L+ L      K     + +++  ++R ++
Sbjct: 5   DALDGFDAYLKANRGLSANTRRAYRSDVEECLVAL-----RKQGCVDLNEVTIEDLRLWM 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +K  ++     S+ R    ++ F  +     + + +   +++  K  ++LP  LNE QA 
Sbjct: 60  AK-SSKNHARSSMARKTVAVRGFFAWAYDHDMASANPAASLQTPKIPDTLPAVLNETQAQ 118

Query: 136 TLVDNVLL--------HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L+D V            + + + I  R++A+L LLY  G+R++E + L   ++     T
Sbjct: 119 QLMDRVDEDGMEARSQEPNMKKQAIALRDAAMLELLYATGMRVAELVGLDVADVTFGNRT 178

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRY 246
           +++ GKGDK R++P      KA+ ++ +     L  +      F G +G  +   + ++ 
Sbjct: 179 VKVTGKGDKQRVMPFGAPADKALRDWLEHGRPVLCGDMSDDAFFLGSQGGRIGQRMVRKV 238

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +    R  G+P   + H LRHS ATH+L  G DLR +Q +LGH  L TTQ YT+V+ +  
Sbjct: 239 VHDRARKAGVP-DISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQ- 296

Query: 307 GDWMMEIYDQTHPSI 321
              +   Y Q  P  
Sbjct: 297 ---LKARYGQAFPRA 308


>gi|148379825|ref|YP_001254366.1| tyrosine recombinase XerD [Clostridium botulinum A str. ATCC 3502]
 gi|153931147|ref|YP_001384123.1| tyrosine recombinase XerD [Clostridium botulinum A str. ATCC 19397]
 gi|153934877|ref|YP_001387663.1| tyrosine recombinase XerD [Clostridium botulinum A str. Hall]
 gi|148289309|emb|CAL83405.1| tyrosine recombinase [Clostridium botulinum A str. ATCC 3502]
 gi|152927191|gb|ABS32691.1| tyrosine recombinase XerD [Clostridium botulinum A str. ATCC 19397]
 gi|152930791|gb|ABS36290.1| tyrosine recombinase XerD [Clostridium botulinum A str. Hall]
          Length = 291

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 160/304 (52%), Gaps = 17/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +N++++L+ ++ LSK TL++Y  D  +F  F+    E  +++ T+       I AF+  
Sbjct: 5   IENYIKDLQ-KKNLSKNTLEAYRRDVEKFSEFVRNREERILSVDTVT------IMAFVQY 57

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            + +     S+ R++  +++F KYL K+ + +E   L     K   ++P+ L+ ++   L
Sbjct: 58  LQREGRATSSIVRNIVSVRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILSVEEVDKL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++      S  +     R+ A+L L+Y  G++I+E L+L   +I    + ++ +G   + 
Sbjct: 118 LN------SPNSSKKGLRDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRE 171

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RI+P+     K +  Y ++ P  +N+     LF  ++G  +    F + I+   +   + 
Sbjct: 172 RIIPIGSYAIKCLKNYLEVRP-AINVYNLDYLFLNLKGTQMTRQGFWKIIKFYAKEASID 230

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
               ++TLRHSFA HLL NG D++S+Q +LGH  L+ TQIY++++ K+    + E+Y   
Sbjct: 231 KEIDSYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKS---KIAEVYKNA 287

Query: 318 HPSI 321
           HP  
Sbjct: 288 HPRA 291


>gi|228470587|ref|ZP_04055444.1| tyrosine recombinase XerD [Porphyromonas uenonis 60-3]
 gi|228307714|gb|EEK16690.1| tyrosine recombinase XerD [Porphyromonas uenonis 60-3]
          Length = 309

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 88/312 (28%), Positives = 146/312 (46%), Gaps = 16/312 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q +   L +E+ LS  ++ SY  D  +   ++           ++R+++   +  F + 
Sbjct: 10  IQRYKTYLRLEQHLSDNSIDSYLYDVDKLYTYIGDMG------LSLREVTLQHLNNFAAH 63

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I  RSL R LSG+KSF ++L   +         ++       LP  L   +  +L
Sbjct: 64  LLDLGISMRSLARVLSGVKSFFRFLSLEEEIERDPTDMLQTPPIPKKLPEVLTLAEIDSL 123

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +         E +   +R++AI+ +LY CGLR+SE   LT  ++  D+  L + GKG K 
Sbjct: 124 L-----GAIDEERPEASRDTAIIEVLYSCGLRVSELCGLTYSDVFLDEGYLHVWGKGRKE 178

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+ P     +  Y +  C ++        +F   RG+P++       IR L    G+
Sbjct: 179 RLVPMSPKAVSDVQRYLNDPCRYNAKPEYDQYIFISRRGQPISRITVFCLIRTLAELAGI 238

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRHSFATHLL  G DL +IQ ++GH  ++TT+IYT+V+       +     +
Sbjct: 239 HKEISPHTLRHSFATHLLEGGADLHAIQLMMGHESIATTEIYTHVD----RTALRADILR 294

Query: 317 THPSITQKDKKN 328
            HP   Q    +
Sbjct: 295 YHPRNQQHPTSH 306


>gi|210633132|ref|ZP_03297699.1| hypothetical protein COLSTE_01612 [Collinsella stercoris DSM 13279]
 gi|210159286|gb|EEA90257.1| hypothetical protein COLSTE_01612 [Collinsella stercoris DSM 13279]
          Length = 305

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 87/316 (27%), Positives = 145/316 (45%), Gaps = 20/316 (6%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           S  LL    +++ +L    G S  T+++Y      +  + A    + +        S  +
Sbjct: 5   SARLLGLIDDYIAHLSRFEGASSETVRAYTQHLEAYARWAARAGRDGLAP------STRD 58

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +RA++S+ R      R++   LS I+SF ++L    +     +  + + K    LP  L 
Sbjct: 59  VRAYLSELRAAGYAARTVAAHLSSIRSFFRWLSDEGLAGADPVTAIASPKLDRPLPHVLA 118

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             Q   L+D   L ++   +     ++A+L L    G RISE  +L   ++   ++++R+
Sbjct: 119 PDQLARLMDAPDLASAGGKR-----DAAMLELFIATGARISELAALDLADVDVSRASVRL 173

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-----NLNIQLPLFRGIRGKPLNPGVFQR 245
            GKG K R+VPL          Y +    +L       + +   F   RG+P++    + 
Sbjct: 174 FGKGSKERLVPLYDRACSVCARYLEEGRGELLGRGAASSREASFFISDRGRPMSASSLRH 233

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
               L+R  G+P   T H +RH+FAT LL  G DLRS+Q +LGH  LSTTQIYT++    
Sbjct: 234 RFDALKRRAGIPADITPHAMRHTFATELLIGGADLRSVQELLGHASLSTTQIYTHLTP-- 291

Query: 306 GGDWMMEIYDQTHPSI 321
             D +     Q HP  
Sbjct: 292 --DRLKSAVHQAHPRA 305


>gi|313199950|ref|YP_004038608.1| tyrosine recombinase xerc [Methylovorus sp. MP688]
 gi|312439266|gb|ADQ83372.1| tyrosine recombinase XerC [Methylovorus sp. MP688]
          Length = 298

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 90/298 (30%), Positives = 153/298 (51%), Gaps = 19/298 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L +L  ER LS LT ++Y+ D +  L        E      ++ ++ T IR  ++   
Sbjct: 7   QYLDHLSHERRLSPLTRENYQRDLKVLL--------ELNGEVPLQNMTGTHIRRHVATLH 58

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +G RS+ R LS  + F ++L +R   + +    +R  K   SLP AL+  QA+ LV 
Sbjct: 59  GRNLGGRSIARMLSAWRGFFEFLIQRHGFSANPCQGIRAPKSPKSLPHALSPDQAVQLV- 117

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                +  +   +  R+ A+L L Y  GLR++E ++L    +   + T+ + GKG+K RI
Sbjct: 118 -----SIDDEDTLAQRDHAMLELFYSSGLRLAELVNLNLDALNLGEGTITVTGKGNKTRI 172

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VP+      A+  +  +    L +     LF    GK L+    Q  ++Q     G+ + 
Sbjct: 173 VPVGQHAMNALQAWLAIRSG-LPIQDTSALFLSRLGKRLSRRAVQYRLQQWAIRQGINIR 231

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              H LRHSFA+H+L + GDLR++Q +LGH  +STTQ+YT+++  +    + ++YD T
Sbjct: 232 VHPHMLRHSFASHVLQSSGDLRAVQEMLGHANISTTQVYTHLDFHH----LAKVYDST 285


>gi|298253366|ref|ZP_06977158.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
 gi|297532761|gb|EFH71647.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
          Length = 322

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 85/320 (26%), Positives = 156/320 (48%), Gaps = 19/320 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +  + +    +++  +   +GL + T ++Y  D  Q L +   +         I +L+  
Sbjct: 14  LPSKYMSLIDDYIDYVRANKGLGERTQKAYASDILQCLAWCNRH-----GFNNISELTTD 68

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++R++++   ++     SL R +  ++ F  + +  +  + +    +   K  N LP  L
Sbjct: 69  DLRSWMAD-ESRSHARSSLARKVVAVRGFFAWCQHVEYISGNPAEILMTPKIKNMLPSVL 127

Query: 130 NEKQALTLVDNVLLHT------SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           +E QA +L++NV              K +  RN+AIL LLY  G+R+ E  SL  Q+I  
Sbjct: 128 DEYQAESLMNNVDSKANVSTSCPKNQKAVGLRNAAILELLYATGIRVGELTSLNIQDINF 187

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL--CPFDLNLNIQLPLFRGIRGKPLNPG 241
              T+++ GKG+K R+VP      KA+  +         L  +++  +F G RGK ++  
Sbjct: 188 SSHTIKVTGKGNKQRVVPFGVPAYKALSAWISKDGREILLRNSVEEAVFLGTRGKRIDQR 247

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + ++ +    +   +P   + H LRHS ATH+L+ G DLR +Q +LGH  L+TTQ YT+V
Sbjct: 248 LVRQIVHDEAKSAHVP-DISPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTHV 306

Query: 302 NSKNGGDWMMEIYDQTHPSI 321
           + ++    +   Y Q  P  
Sbjct: 307 SIES----LKRKYSQAFPRA 322


>gi|153810458|ref|ZP_01963126.1| hypothetical protein RUMOBE_00839 [Ruminococcus obeum ATCC 29174]
 gi|149833637|gb|EDM88718.1| hypothetical protein RUMOBE_00839 [Ruminococcus obeum ATCC 29174]
          Length = 296

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 77/308 (25%), Positives = 149/308 (48%), Gaps = 16/308 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + K  +N++  +   +  S+ T  SYE D ++   +L         I    +++ T+++ 
Sbjct: 3   MEKVIENFIAYMREAKKASQNTEISYERDLKKLARYL-----RNQKIMDFSEVTKTDLQG 57

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++ + + + +   ++ R+++ I++   Y+ +     E     ++  K    +P  L+ ++
Sbjct: 58  YLKELQKENLALSTISRNIASIRALYHYMIRTGKMQEDPSETLKPPKLEKKMPEILSVEE 117

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+    L+T         R++A++ L+Y  G+R+SE + L   +I      + I   
Sbjct: 118 VDRLLKQPNLNTPK-----GIRDNAMMELMYATGMRVSELIHLQITDINLQMGYV-ICHD 171

Query: 194 GDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
            +K RI+P+    R AIL+Y      F +    +  LF    GK ++   F + ++    
Sbjct: 172 SEKERIIPIGNVSRNAILQYMEHSRGFFVKNKKESSLFTNCSGKSMSRQGFWKVLKGYAV 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    T HTLRHSFA H+L NG D++S+Q +LGH  +S+TQIY  +N       M +
Sbjct: 232 DAGIHRDITPHTLRHSFAVHMLQNGADVKSVQEMLGHSDISSTQIYLGMNVAR----MRD 287

Query: 313 IYDQTHPS 320
           +Y + HP 
Sbjct: 288 VYMKAHPR 295


>gi|33594003|ref|NP_881647.1| site-specific tyrosine recombinase XerC [Bordetella pertussis
           Tohama I]
 gi|33564077|emb|CAE43345.1| putative integrase/recombinase [Bordetella pertussis Tohama I]
 gi|332383420|gb|AEE68267.1| site-specific tyrosine recombinase XerC [Bordetella pertussis CS]
          Length = 326

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 95/335 (28%), Positives = 156/335 (46%), Gaps = 27/335 (8%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
              +  L +   +WL++L+  R  S  TL  Y  D RQ     A           + +++
Sbjct: 4   APAASPLPQPMADWLRHLQAHRRYSAHTLDGYTRDLRQLAQQAAAAG------LPLERVA 57

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
              IR F+++   Q +G RSL R+L+  + F ++         +    +R  K    LP+
Sbjct: 58  NGHIRHFVARLHAQGLGPRSLARALAAWRGFYQWWAPAAGLPGNPATGVRAPKAPRGLPK 117

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI------ 181
           AL+ +Q   L+D+     +  T+    R+ A+  LLY  GLR++E +SL  +        
Sbjct: 118 ALSVEQTQVLLDHAPARLA--TEPAALRDHAMFELLYSSGLRLAELVSLDLRYERTPEYE 175

Query: 182 -----MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL----FRG 232
                  D + + + GKG K R VP+  S   A+ ++    P               F G
Sbjct: 176 SRSWLNRDDAEVIVVGKGGKRRSVPVGQSALAALDKWLQARPQLAAAGAGAQDAAALFVG 235

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
            RG+ + P V Q  + +L +  GLP     H LRHSFA+H+L +  DLR++Q +LGH  +
Sbjct: 236 ARGRRIAPRVVQLQLARLAQAAGLPAHVHPHVLRHSFASHVLQSAQDLRAVQEMLGHANI 295

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
           STTQ+YT ++ ++    +   YDQ HP   +K  +
Sbjct: 296 STTQVYTRLDFQH----LARAYDQAHPRAGRKTSR 326


>gi|298346742|ref|YP_003719429.1| integrase/recombinase XerD family protein [Mobiluncus curtisii ATCC
           43063]
 gi|298236803|gb|ADI67935.1| integrase/recombinase XerD family protein [Mobiluncus curtisii ATCC
           43063]
          Length = 309

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 87/325 (26%), Positives = 149/325 (45%), Gaps = 28/325 (8%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           PE+++       Q +L  L +ERG S  T+ +Y  D R+++ FL         + ++ ++
Sbjct: 3   PELLNP------QPYLDYLVVERGASPHTVAAYTRDLRRYITFLIAN-----GVNSLDEV 51

Query: 67  SYTEIRAFISKRRTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           +   + +F             +   S +R+++ ++S+ +Y  +      +    +   K 
Sbjct: 52  TLPLLESFARALEAGFGDYAAVAPSSARRAIASVRSWHRYAYETGAVRANPTKGIAPAKV 111

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              LP  L  ++  TL++      S        R+ A+L  LY  G RISEA++L   +I
Sbjct: 112 GAHLPTVLTVEEVQTLLE----AASAPGDDNALRDRALLEFLYATGARISEAVNLAVDDI 167

Query: 182 MDDQST--LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKP 237
             D+    +R+ GKG K R+  L    + A+  Y       L      Q  +F    G+P
Sbjct: 168 NLDEEIPLVRLFGKGRKERLSMLGHLAKDALEAYLVRVRPRLAEKGRSQGRVFLNTLGRP 227

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+       I+   +   + +    HTLRH FATHLL  G D+R++Q +LGH  ++TTQI
Sbjct: 228 LSRQSAWAIIQAAAQRAQITVPVGPHTLRHCFATHLLQGGADVRAVQELLGHASVTTTQI 287

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSIT 322
           YT V++    D + E+Y   HP   
Sbjct: 288 YTKVSN----DMLREVYASAHPRAR 308


>gi|221068555|ref|ZP_03544660.1| tyrosine recombinase XerD [Comamonas testosteroni KF-1]
 gi|220713578|gb|EED68946.1| tyrosine recombinase XerD [Comamonas testosteroni KF-1]
          Length = 318

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 78/306 (25%), Positives = 137/306 (44%), Gaps = 15/306 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                ++  L +E GLS  TL +Y  D      +LA     K+    +      +++ + 
Sbjct: 26  DALDEFIDALLLEDGLSHNTLSAYRRDLTAAARWLAQLQPPKVLDAALE----ADLQGYF 81

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +  R +     S  R L+ ++ +  +  + K       + M   K+    P+ L ++Q  
Sbjct: 82  TA-RVEGTKATSSNRRLTVLRRYFHWALREKRIAADPTVRMLAAKQPPRTPKTLTQEQVE 140

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+D            +  R+ A+L L+Y  GLR+SE + +    +      LR+ GKG 
Sbjct: 141 ALLD-----APDVETALGLRDRAMLELMYASGLRVSELVGVRMHELDLRSGVLRVTGKGR 195

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K R+VP     +  +  Y        L       +F   RG  ++  +F   +++  +  
Sbjct: 196 KERLVPFGQEAQHWLERYLQQARAAILGGQQTEEVFVTQRGAGMSRVMFWVIVKKCAQIA 255

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+    + HTLRH+FATHLL++G DLR +Q +LGH  +STT IYT+V  +     +  ++
Sbjct: 256 GINSPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHVARER----LKALH 311

Query: 315 DQTHPS 320
            + HP 
Sbjct: 312 AEHHPR 317


>gi|194333360|ref|YP_002015220.1| integrase family protein [Prosthecochloris aestuarii DSM 271]
 gi|194311178|gb|ACF45573.1| integrase family protein [Prosthecochloris aestuarii DSM 271]
          Length = 335

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 95/320 (29%), Positives = 156/320 (48%), Gaps = 20/320 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFIS 76
            + +L  + +ER  S+ T ++Y  D  QF  F+ + +T           +S  ++R F+ 
Sbjct: 20  LKGFLDYVTLERHFSRHTREAYRTDICQFYTFIRYQHTLADKDPIDPASISVLDVRLFMG 79

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           +   + +  +S+ R L+ +KSF  YL +      S    +   + S  +P  L+E++   
Sbjct: 80  ELLEKGLQPKSIARKLAAVKSFYNYLLETGAVKVSVPSQVITPRFSKPVPGFLSERETEK 139

Query: 137 LVDNVLLHTSH----------ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           L D +L   +           +  +  AR+ A+L +LYGCGLRISE + L  +N+    S
Sbjct: 140 LFDELLSLPAPGEALGAVRAGDGGFTYARDRALLEVLYGCGLRISEVIGLQYENVNLQDS 199

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPG 241
            LR+ GKG K RIVPL    R A+  Y+          +        +F   +G+ + P 
Sbjct: 200 LLRVSGKGGKQRIVPLGGPARTALRNYFEVRRNFFRMKNEESPDASYVFVTKKGRRIYPV 259

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + QR  R+    +        H LRHSFATH+L++G DL+S+  +LGH  L+TT+IYT+V
Sbjct: 260 LVQRVTRKYLSAVTEIKYKNPHVLRHSFATHMLNSGADLKSVSEMLGHTNLTTTEIYTHV 319

Query: 302 NSKNGGDWMMEIYDQTHPSI 321
                   + E+Y + HP  
Sbjct: 320 TF----GRIKEVYLKAHPKA 335


>gi|300690586|ref|YP_003751581.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07]
 gi|299077646|emb|CBJ50282.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07]
          Length = 308

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 84/318 (26%), Positives = 142/318 (44%), Gaps = 20/318 (6%)

Query: 7   PEIVSFELLKE--RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           PE+++   L     Q +   L +E GL++ TL +Y  D   +  +LA         + I 
Sbjct: 6   PEVLAPARLSAETIQRFCDALWLEDGLARNTLDAYRRDLTLYAQWLAERG------KAID 59

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           Q    ++  + + R  +     S  R  +  K F ++  +  + +      +   K+   
Sbjct: 60  QTEDGDLADYFAARHAESRA-SSANRRRTVFKRFFQWALREHVISADPSRLLSTAKQPPR 118

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           +P+ L+E Q   L+             +  R+ A++ L+Y  GLR+SE ++L    +  +
Sbjct: 119 IPKTLSEAQVEALI-----AAPDIDTPLGLRDRAMIELMYASGLRVSEIVALKTVEVGLN 173

Query: 185 QSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGV 242
           +  +R+  GKG K R+VP        +  Y        L       LF   RG  +    
Sbjct: 174 EGVVRVVSGKGGKDRLVPFGAEAGDWLRRYLRDGRTALLGERTADALFVTARGDGMTRQA 233

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           F   I++      L    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V 
Sbjct: 234 FWHLIKRYALRADLHAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVA 293

Query: 303 SKNGGDWMMEIYDQTHPS 320
            +     +  ++ Q HP 
Sbjct: 294 RER----LRTLHAQHHPR 307


>gi|290894169|ref|ZP_06557140.1| integrase/recombinase XerC [Listeria monocytogenes FSL J2-071]
 gi|290556299|gb|EFD89842.1| integrase/recombinase XerC [Listeria monocytogenes FSL J2-071]
 gi|313609074|gb|EFR84788.1| tyrosine recombinase XerC [Listeria monocytogenes FSL F2-208]
          Length = 300

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 145/308 (47%), Gaps = 15/308 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q +L  L  ER  S  T  +YE D   F  FL      +  I+T +Q+++ ++R ++
Sbjct: 6   KLEQQFLDYLHSERNYSVNTSTAYENDLLDFRRFL-----NEQAIETYQQVTFLDVRIYL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++ + +     ++ R +S ++SF  +L +  + TE+    + + K    LP+    ++  
Sbjct: 61  TELKQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEME 120

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L   V      + + +  R+  +L +LYG G+R+SE   +   ++      + I+GKG+
Sbjct: 121 ALFQVVY----EDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGN 176

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R VP       AI +Y       +         L     G PL     +  + ++   
Sbjct: 177 KERYVPFGVYAEDAITDYLPKRTELMTRYKKSHDALLVNHYGDPLTTRGIRYCLTKIISK 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRH+FAT LL+NG D+R++Q +LGH  LS+TQIYT+V  ++    +   
Sbjct: 237 ASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----LKST 292

Query: 314 YDQTHPSI 321
           Y + HP  
Sbjct: 293 YMKHHPRA 300


>gi|171742561|ref|ZP_02918368.1| hypothetical protein BIFDEN_01674 [Bifidobacterium dentium ATCC
           27678]
 gi|283456353|ref|YP_003360917.1| Integrase/recombinase [Bifidobacterium dentium Bd1]
 gi|306822472|ref|ZP_07455850.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679]
 gi|309801397|ref|ZP_07695524.1| site-specific tyrosine recombinase XerC [Bifidobacterium dentium
           JCVIHMP022]
 gi|171278175|gb|EDT45836.1| hypothetical protein BIFDEN_01674 [Bifidobacterium dentium ATCC
           27678]
 gi|283102987|gb|ADB10093.1| Integrase/recombinase [Bifidobacterium dentium Bd1]
 gi|304554017|gb|EFM41926.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679]
 gi|308221912|gb|EFO78197.1| site-specific tyrosine recombinase XerC [Bifidobacterium dentium
           JCVIHMP022]
          Length = 306

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 82/311 (26%), Positives = 151/311 (48%), Gaps = 18/311 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +   L+  RGLS  T ++Y  D  + +  L       +  + + +++  ++R ++S+
Sbjct: 7   IDAFDAYLKANRGLSDNTRKAYRGDLEECMTQLEI-----LGCEDLNEVTIEDLRMWMSQ 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             +++    S+ R    ++ F  +  +R +T  +    +   K  ++LP  L+E QA  L
Sbjct: 62  -SSKRHARSSMARKTVAVRGFFAWTHERGVTNANPAAMLMTPKIPDTLPAVLSESQAEKL 120

Query: 138 VDNVLLHTSH------ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           +D V              + +  RN+A+L +LY  G+R++E + L   ++  D  T+++ 
Sbjct: 121 MDCVDEQMPKSRTKSVRKQAVGLRNAAMLEVLYATGIRVAELVGLDVHDVAFDNRTMKVT 180

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           GKG+K R+VP      ++I  + +   P  +       LF G +G  ++  V ++ + + 
Sbjct: 181 GKGNKQRVVPFGVPAEQSIRRWLEDGRPRLVRARSADALFLGAQGNRIDQRVVRQVVHEC 240

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  G+P   + H LRHS ATHLL  G DLR +Q +LGH  L TTQ YT+V+ +     +
Sbjct: 241 AQRAGVP-DISPHALRHSAATHLLDGGADLRQVQELLGHSSLKTTQRYTHVSIEQ----L 295

Query: 311 MEIYDQTHPSI 321
              Y Q  P  
Sbjct: 296 KARYGQAFPRA 306


>gi|198284552|ref|YP_002220873.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218667700|ref|YP_002427220.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198249073|gb|ACH84666.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218519913|gb|ACK80499.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 302

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 95/316 (30%), Positives = 154/316 (48%), Gaps = 19/316 (6%)

Query: 9   IVSFELLKERQN---WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           + S  L  ERQ    +L  L +E+ L + TL +Y  D  Q    LA +    +T+ T   
Sbjct: 1   MPSAGLSAERQRIDTFLDALWLEKNLGENTLTAYRQDLLQVAAALAEW---DLTLTTADD 57

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
            +   I   + +R       RS+ R LS ++ F  Y ++    +     N+++ +    L
Sbjct: 58  GALARI---LGQRLQSGAALRSVVRLLSSVRRFYGYAEREGWVSRDPSRNLQSPRIGRVL 114

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P  L+E +   L     L     T  +  R++A+L L+Y CGLR+SE ++L  + +    
Sbjct: 115 PHVLSETEIEAL-----LAAPDCTHPLGLRDAAMLELMYACGLRVSELVNLETRQVDLSA 169

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
             + + GKG K R+VP+       + +Y  +  P  L   I   LF   RG  +    F 
Sbjct: 170 DMVVVFGKGRKERLVPMGEVAAGRVTQYLQMGRPQILGQRISAALFVTGRGAAMTRQRFW 229

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + I +  R  G+  + + H+LRH+FATHLL++G DLRS+Q +LGH  LSTT+IYT+V   
Sbjct: 230 QNIERYARSAGITQTVSPHSLRHAFATHLLNHGADLRSVQLMLGHAALSTTEIYTHVAQA 289

Query: 305 NGGDWMMEIYDQTHPS 320
                +  ++ + HP 
Sbjct: 290 R----LKALHAKHHPR 301


>gi|302038654|ref|YP_003798976.1| tyrosine recombinase XerD [Candidatus Nitrospira defluvii]
 gi|300606718|emb|CBK43051.1| Tyrosine recombinase XerD [Candidatus Nitrospira defluvii]
          Length = 299

 Score =  245 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 88/308 (28%), Positives = 151/308 (49%), Gaps = 15/308 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +  ++ I RGLS+ TL +Y+ D   F  +L         +  +R++S   +  F+  
Sbjct: 5   IERYWDHVRIARGLSRNTLLAYQRDVASFQHYLRDQQ-----VSDVREMSPPLLAGFLDH 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +   S  R+L+ ++S  ++LK+  +   +  +++R+  ++  LP+ L+ ++    
Sbjct: 60  LHQSGLASPSRARALAAVRSLFRFLKQEGMIAANPTVSLRSASRARRLPKTLSPEEV--- 116

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               LL         D R+ A++ +LY  G+R+SE +SL       D   + I GKG+K 
Sbjct: 117 --TRLLELPPRPLPEDHRDRAMVEVLYAAGVRVSELISLRVDQCNLDVGYIGITGKGEKQ 174

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+     +A+  Y     P  L       +F   RG PL    F + +R      G+
Sbjct: 175 RVVPIGRPAIEAVQAYLLAARPALLKQRSSRFVFVSRRGTPLTRQAFWKLLRARAHRAGI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRHSFATHLL  G DLRS+Q++LGH  ++TTQIYT+V+S      + +I+  
Sbjct: 235 ARIPSPHMLRHSFATHLLQRGADLRSVQAMLGHADIATTQIYTHVDSSQ----LKKIHTA 290

Query: 317 THPSITQK 324
             P    +
Sbjct: 291 CFPRNRSR 298


>gi|299530798|ref|ZP_07044213.1| tyrosine recombinase XerD [Comamonas testosteroni S44]
 gi|298721314|gb|EFI62256.1| tyrosine recombinase XerD [Comamonas testosteroni S44]
          Length = 318

 Score =  245 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 77/305 (25%), Positives = 138/305 (45%), Gaps = 15/305 (4%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
               ++  L +E GLS+ TL +Y  D      +LA         + +      +++ + +
Sbjct: 27  ALDQFIDALLLEDGLSRNTLSAYRRDLTATARWLARLQP----PKALDAALEGDLQGYFT 82

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             R +     S  R L+ ++ +  +  + K       + M   K+   +P+ L ++Q   
Sbjct: 83  A-RVEGTKATSSNRRLTVLRRYFHWALREKRIAADPTVRMLAAKQPPRMPKTLTQEQVEA 141

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+D            +  R+ A+L L+Y  GLR+SE + +    +      LR+ GKG K
Sbjct: 142 LLD-----APDVDSPLGLRDRAMLELMYASGLRVSELVGVRMHELDLRSGVLRVTGKGRK 196

Query: 197 IRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R+VP     +  +  Y        L       +F   RG  ++  +F   +++  +  G
Sbjct: 197 ERLVPFGQEAQHWLERYLQQARAAILGGQQTEEVFVTQRGAGMSRVMFWVIVKKCAQIAG 256

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + HTLRH+FATHLL++G DLR +Q +LGH  +STT IYT+V  +     +  ++ 
Sbjct: 257 INSPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHVARER----LKALHA 312

Query: 316 QTHPS 320
           + HP 
Sbjct: 313 EHHPR 317


>gi|260583822|ref|ZP_05851570.1| integrase/recombinase XerC [Granulicatella elegans ATCC 700633]
 gi|260158448|gb|EEW93516.1| integrase/recombinase XerC [Granulicatella elegans ATCC 700633]
          Length = 294

 Score =  245 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 85/295 (28%), Positives = 145/295 (49%), Gaps = 17/295 (5%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
            T+++Y+ D  QFL+FL     ++I +  + +++  ++R ++ K   Q+    S+ R LS
Sbjct: 2   KTVEAYQRDIEQFLMFL-----KEIPLTKLSEVTAVDVRIYLGKLHQQQYNRSSISRFLS 56

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            ++SF +YL +     E+   ++   K    LP    E +    +      +    + +D
Sbjct: 57  SLRSFYQYLLEHDFVEENPFASISYKKGQKRLPEFFYEDEMEKFI-----ASIDGNQPLD 111

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            RN A++ +LY  G+R+SE   LT Q +      + + GKG K R VP+     +A+  Y
Sbjct: 112 QRNRALIEVLYATGMRVSELTELTLQQLDLKNGVILVIGKGSKERYVPIGDFATEALQLY 171

Query: 214 YDLCPFDLN---LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            +     L          +F    G P+     +  + QL +  GL L    H LRH+FA
Sbjct: 172 LEESRSSLMSQYKKEHASVFVNHLGDPITTTGVRYILNQLLQESGLQLKIHPHMLRHTFA 231

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           THLL+NG D++++Q +LGH  LS+TQIYT+V      D + + Y    P   Q++
Sbjct: 232 THLLNNGADMKTVQELLGHVSLSSTQIYTHVT----KDALQQNYQLYFPRAKQEE 282


>gi|255692650|ref|ZP_05416325.1| tyrosine recombinase XerC [Bacteroides finegoldii DSM 17565]
 gi|260621626|gb|EEX44497.1| tyrosine recombinase XerC [Bacteroides finegoldii DSM 17565]
          Length = 293

 Score =  245 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 76/304 (25%), Positives = 141/304 (46%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L  L  ER  S  T+ +Y  D RQ   F     +E+       ++    IR +I  
Sbjct: 3   IESFLDYLRYERNYSDKTVLAYGEDIRQLQEF----AQEEYGEFDPLEVEAELIREWIVS 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S+ R LS +++F K+L K+   T   +  +   K   +LP  L E +   L
Sbjct: 59  LMDKGYTSTSVNRKLSTLRTFYKFLLKKGEVTVDPLRKIVGPKNKKTLPVFLKENEMNKL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D     T     +   R+  I+ + Y  G+R+SE + L  +++    S L++ GK +K 
Sbjct: 119 LD----ETDFGEGFKGCRDRLIIEMFYATGMRLSELIDLDDKDVDFSGSCLKVTGKRNKQ 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R++P    +R  +L Y D+    +    +   F    G+ L   +    +++    +   
Sbjct: 175 RLIPFGDELRDWMLGYIDVRNEMIPERSE-AFFVRENGERLYKNLVYNLVKRNLSKVATL 233

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FAT +L+N  +L +++ +LGH  ++TT+IYT+   +     + ++Y Q 
Sbjct: 234 KKKSPHVLRHTFATTMLNNNAELGAVKELLGHESITTTEIYTHATFEE----LKKVYKQA 289

Query: 318 HPSI 321
           HP  
Sbjct: 290 HPRA 293


>gi|225375588|ref|ZP_03752809.1| hypothetical protein ROSEINA2194_01213 [Roseburia inulinivorans DSM
           16841]
 gi|225212567|gb|EEG94921.1| hypothetical protein ROSEINA2194_01213 [Roseburia inulinivorans DSM
           16841]
          Length = 286

 Score =  245 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 138/291 (47%), Gaps = 12/291 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++  N++Q L  E+  S+ T  SYE D ++ +++L  +      +  I  ++   + +
Sbjct: 3   MKQDIHNFIQYLHQEKQTSENTEVSYERDLKKMILYLTAH-----GVDRIDAVTPEVLNS 57

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++ +     +   ++ RS++ +K+F  Y +  + T+      ++  K     P  L  +Q
Sbjct: 58  YVIELEQSGLKPATVSRSVASMKAFFHYEELEQRTSADPAFELKAPKVEKKAPTILTTEQ 117

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+         +      R+ A+L LLY  G+R+SE +SL   ++  D   +     
Sbjct: 118 TNRLL-----AQPKDNSAKGLRDKAMLELLYATGIRVSELISLKLTDVNFDTGYITCVDS 172

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
               R++P+ P  + A++ Y       L      + LF    G  ++   F + I+   +
Sbjct: 173 HKG-RMIPMTPVAKDALVRYIRDGRPQLVKDENSIWLFTNCSGDAMSRQGFWKLIKSYGK 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             G+    T H LRHSFA HL+ +G DL+S+Q ILGH  +STTQ+Y ++N 
Sbjct: 232 RAGIESEITPHMLRHSFAAHLVCSGADLKSVQEILGHSDISTTQMYAHMNQ 282


>gi|269836497|ref|YP_003318725.1| integrase family protein [Sphaerobacter thermophilus DSM 20745]
 gi|269785760|gb|ACZ37903.1| integrase family protein [Sphaerobacter thermophilus DSM 20745]
          Length = 306

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 85/295 (28%), Positives = 137/295 (46%), Gaps = 10/295 (3%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +  + +L  L  +RG S  T+ +Y  D  QF  FL     E+  +Q+  +L+ T +  
Sbjct: 1   MEERIERFLAALGRDRGFSPNTVSAYRNDLSQFCHFLC----EQHVLQSWAELTGTILTN 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++   R +   + ++ R ++ +KSF  YL +           + + K    +PRA+  +Q
Sbjct: 57  YVLYLRERGYANATVARKVAAVKSFCHYLVECGELRHDPAAELPSPKVDKFIPRAITPEQ 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L    L   + E      R+ A+L  LY  G+R+SE  +L   ++  +   +R   K
Sbjct: 117 VEAL----LAQPARERTPEALRDKAMLETLYASGMRVSELTALNVDDLDLEAGRVRCGNK 172

Query: 194 GDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
            ++ R VPL  S   A+ EY  L  PF      +  LF   RG  L    F   ++    
Sbjct: 173 PERQRWVPLSSSAIAALDEYLQLGRPFLRQSPAEQALFLNHRGSRLTRQGFWLILKSYAE 232

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
              L    T HTLRH+FA H L+ G  LR +Q +LGH  +STTQ+Y  V ++ G 
Sbjct: 233 AAELG-DITPHTLRHTFAAHALTRGRALREVQQVLGHVSISTTQVYQQVAAQVGR 286


>gi|254561653|ref|YP_003068748.1| tyrosine recombinase xerD [Methylobacterium extorquens DM4]
 gi|254268931|emb|CAX24892.1| Tyrosine recombinase xerD [Methylobacterium extorquens DM4]
          Length = 328

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 86/320 (26%), Positives = 140/320 (43%), Gaps = 32/320 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L  L  ERG +  TL +Y  D   +L +LA             +    ++RA+I+  
Sbjct: 17  QLFLDMLAAERGAAANTLAAYRRDLDDYLGYLAQ------GGIDPEEAQADQVRAYIASL 70

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   S  R LS I+ F ++L     +       +   +++  LP+ L+  +   L+
Sbjct: 71  EPRGLKASSAARRLSCIRGFHRFLYAEGYSETDPTAPVAAPRRAKGLPKVLSVAEVDRLL 130

Query: 139 DNVLLHTSHETKWIDARNSA----------ILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
                 T+ E       + A          +L LLY  GLR+SE ++L        +  L
Sbjct: 131 -----ATARERVEAAGDDRAEARSAARMLCLLELLYATGLRVSELVALPRSAAATRERYL 185

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYI 247
            ++GKG + R+VPL    R+A+  +      +        LF        L    F R +
Sbjct: 186 VVKGKGGRERLVPLTDLAREAMRTHVAYLTAEGAW-----LFPAESESGHLTRQAFARDL 240

Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +      GL     + H LRH+FA+HLL NG DLR +Q +LGH  +STTQIYT+V  +  
Sbjct: 241 KTAAAAAGLRTDRVSPHVLRHAFASHLLQNGADLRIVQELLGHADISTTQIYTHVLDERL 300

Query: 307 GDWMMEIYDQTHPSITQKDK 326
              + ++    HP   + D+
Sbjct: 301 KGMVRDL----HPLNDRGDQ 316


>gi|153008242|ref|YP_001369457.1| site-specific tyrosine recombinase XerD [Ochrobactrum anthropi ATCC
           49188]
 gi|151560130|gb|ABS13628.1| tyrosine recombinase XerD [Ochrobactrum anthropi ATCC 49188]
          Length = 307

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 91/312 (29%), Positives = 143/312 (45%), Gaps = 16/312 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             +N+L+ +  ERG ++ TL+SY  D       L+           + +     IR+ I 
Sbjct: 6   AIENFLEMMSAERGAAENTLESYRRDLEAVAEALSARG------VNLAEAGADHIRSAID 59

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              T+     S  R LS ++ F ++L       +     +   KK   LP+ ++ +    
Sbjct: 60  AMATEGFAATSQARRLSALRQFFRFLYSEGYRQDDPTGTVDAPKKQKPLPKIMSVENVTK 119

Query: 137 LVDNVLLHTSHE----TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           L+D   L TS E     ++   R  A++  LY  G+R+SE + L       D   L + G
Sbjct: 120 LLDRAALETSEEAEPAERFKALRLHALIETLYATGMRVSELVGLPVGVARIDHRFLLVCG 179

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLR 251
           KG K R+VPL P  R+A+  +  L       +    LF        L   VF R ++ L 
Sbjct: 180 KGSKERMVPLSPKAREALQRFLALRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLA 239

Query: 252 RYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              GL  +  + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V  +     +
Sbjct: 240 ARAGLSAAAVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER----L 295

Query: 311 MEIYDQTHPSIT 322
            ++  + HP   
Sbjct: 296 HKLVSEHHPLAD 307


>gi|307295097|ref|ZP_07574939.1| integrase family protein [Sphingobium chlorophenolicum L-1]
 gi|306879571|gb|EFN10789.1| integrase family protein [Sphingobium chlorophenolicum L-1]
          Length = 298

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 117/303 (38%), Positives = 175/303 (57%), Gaps = 13/303 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + W ++L ++R  S  T+++Y     + + FL  +  E +T   +  +   ++RAF++ R
Sbjct: 9   EQWRRHLALDRRRSVHTVRAYVATAERLVAFLEEHRGEAVTAAMLAGIEQADLRAFLTVR 68

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R   IG+ S  R LS ++ FL+++       ++ +  ++  +    LPR ++  +A+ L 
Sbjct: 69  RMDGIGNVSAARELSAVRGFLRFVGGE----DARVPMLKGPRVKRGLPRPVSPDEAVAL- 123

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
               +  +   +WI AR+ A+L LLYG GLRI EA+ LT   ++    TLR+ GK  K R
Sbjct: 124 -AGDIAETAREEWIGARDWAVLLLLYGAGLRIGEAMGLT-GAVLPLGETLRVTGKRGKTR 181

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVPLLP VR AI  Y  LCPF        PLFRG RG PL+P + +R ++  R  LGL  
Sbjct: 182 IVPLLPQVRSAIDAYVALCPF--GAERDAPLFRGARGGPLSPALIRRAVQGARGRLGLSD 239

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
            TT H LRHSFATHLL  G DLRS+Q +LGH  LS+TQIYT+V++ +    +++IY   H
Sbjct: 240 RTTPHALRHSFATHLLGRGADLRSLQELLGHASLSSTQIYTHVDAAH----LLDIYRNAH 295

Query: 319 PSI 321
           P  
Sbjct: 296 PRA 298


>gi|157377259|ref|YP_001475859.1| tyrosine recombinase XerC [Shewanella sediminis HAW-EB3]
 gi|157319633|gb|ABV38731.1| tyrosine recombinase XerC [Shewanella sediminis HAW-EB3]
          Length = 301

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 83/309 (26%), Positives = 147/309 (47%), Gaps = 19/309 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  Q +   L  ER LSK T+++Y  +  +    L   T       +   ++  +++  +
Sbjct: 4   EWFQKFESYLSAERQLSKHTVRNYLYELERVSKRLDETT-------SWLDVTREQLQGAL 56

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           S+   Q +  RS+  +LS IK F  +L        +  +++   K++  LP+ ++     
Sbjct: 57  SQIHRQGLSPRSISLTLSAIKQFCDFLLAEGAIQANPAMSLSAPKQNKPLPKNMDLDSVT 116

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L++            +  R+ AI+ L Y  GLR++E  +L  ++I   +  +++ GKG 
Sbjct: 117 HLLEI------DGDDPLSVRDKAIMELFYSSGLRLAELAALDVKDIDFGERQVKVMGKGS 170

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RIVP+      AI  +       +  +    LF   +GK L     Q  + +  +   
Sbjct: 171 KERIVPIGNMAMNAIECWLTCRKGIVCED--GALFVTGKGKRLAHRSIQARLAKWGQEQA 228

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L +    H LRHSFATH+L +  DLR++Q +LGH  LSTTQIYT+++ ++    + ++YD
Sbjct: 229 LNMRVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQIYTSLDFQH----LAKVYD 284

Query: 316 QTHPSITQK 324
             HP    K
Sbjct: 285 GAHPRAKAK 293


>gi|186474845|ref|YP_001856315.1| site-specific tyrosine recombinase XerC [Burkholderia phymatum
           STM815]
 gi|184191304|gb|ACC69269.1| tyrosine recombinase XerC [Burkholderia phymatum STM815]
          Length = 307

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 87/316 (27%), Positives = 157/316 (49%), Gaps = 29/316 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +LE ER LS  TL++Y  +  +               + +  L+ T+IR  +++   
Sbjct: 10  YLSSLEHERRLSAHTLRAYTHELGELKTLANG--------RPLESLTATDIRGAVARAHA 61

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  RS+   LS  ++F ++L  R     + +  +R  K++ +LP+AL+      L++ 
Sbjct: 62  GGLSARSIGHRLSAWRAFYRWLAGRVDLPANPVATVRAPKRAKTLPKALSVDDTHKLME- 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-----------DDQSTLR 189
               T         R+ A+L L Y  GLR+SE + L  Q               D + + 
Sbjct: 121 ----TPATATAEGLRDHAMLELFYSSGLRLSELVGLDAQYADADGYRSQGWLKLDDAEVE 176

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG++ R+VP+     +A+  +  +    +  +   PLF  +RG  ++P V +  +++
Sbjct: 177 VLGKGNRRRVVPVGSKALEALRAWLAVRGELVKHDPH-PLFVSVRGNRMSPNVVRDRVKR 235

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+P +   H LRHSFATH+L + GDLR++Q +LGH  ++ TQ+YT ++ ++    
Sbjct: 236 AALTAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASIAATQVYTGLDFQH---- 291

Query: 310 MMEIYDQTHPSITQKD 325
           +  IYDQ HP   ++D
Sbjct: 292 LARIYDQAHPRAKKRD 307


>gi|300087795|ref|YP_003758317.1| integrase family protein [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527528|gb|ADJ25996.1| integrase family protein [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 328

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 94/324 (29%), Positives = 150/324 (46%), Gaps = 24/324 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDT----RQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
             ++L +L  E  LS  T+++Y+ D     ++      F   E+  +     +    IR 
Sbjct: 14  FDDYLIHLGTELNLSPRTIRNYKNDIIGNQQKGEPHGFFQYLEQHRLSFPSDVDKYVIRG 73

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI---------LNMRNLKKSNS 124
           +I+    Q +   S+ R LS I+S  +YL + +I TES +         L+  ++K    
Sbjct: 74  YIAWLLEQGVVKSSVVRKLSAIRSLFRYLLREEIITESPLPVTRKHGGRLSAFSIKLDKR 133

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   +   L++         +K +  R+ AI+ ++Y  GLRISE   +    +   
Sbjct: 134 LPSFLTVDEMERLLE-----APETSKPVGLRDKAIMEMIYAAGLRISELSDIKVSQVDYY 188

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGV 242
              LR+ GKG K R+V +      A+ +Y +     L         LF   RG  L+   
Sbjct: 189 SRELRVTGKGQKERLVIIGQPAADAVKKYLEKARPKLAKAERATDSLFLNYRGGSLSVRS 248

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            Q+ I +  R  G+      H LRHSFATHLL  G DLR +Q +LGH  LSTTQIYT+V+
Sbjct: 249 MQKLILRYARIAGIRQEVHPHLLRHSFATHLLDGGADLRVVQELLGHSSLSTTQIYTHVS 308

Query: 303 SKNGGDWMMEIYDQTHPSITQKDK 326
                    ++Y  +HP   ++++
Sbjct: 309 RNQA----RKVYLSSHPLAKEQER 328


>gi|294102502|ref|YP_003554360.1| integrase family protein [Aminobacterium colombiense DSM 12261]
 gi|293617482|gb|ADE57636.1| integrase family protein [Aminobacterium colombiense DSM 12261]
          Length = 297

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 91/320 (28%), Positives = 158/320 (49%), Gaps = 25/320 (7%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           + E +SF L      +L+ +   + +S  T+++Y  D  QF+ +L    E+ +T+  + +
Sbjct: 3   MVEKLSFAL----DYYLEQMRFAKSMSMYTIENYAVDLNQFVNYL---LEQNVTL--LSE 53

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +    IR ++    +      S+ R LS IK++  +L  +K+  +    N++  +    L
Sbjct: 54  VDTRIIREYLRVLASFGYARSSVARKLSAIKNWFAFLVDKKLVGKDPAKNVKGPRLPGRL 113

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           PRAL+ +Q   L++     ++   +     + A+L LLYGCGLRI E + L  ++I   +
Sbjct: 114 PRALSVEQVSRLIEVGCAKSADPLR-----DKAVLELLYGCGLRIGELVVLRWEDIDFAE 168

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             +R++GKG+K R++P+     KA+  + D C   +       LF G  G  L      R
Sbjct: 169 RWVRVRGKGNKERMIPVGKMAIKALYNWRDSCQMGI------FLFTGEEGSHLTVRTVGR 222

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            + +  +  GL    T H LRHSFATH+L  G  +R +Q +LGH  L TTQ Y  V +++
Sbjct: 223 IVDRAAKRAGLS-GVTPHMLRHSFATHMLEGGASIRVVQELLGHESLITTQRYLTVTAEH 281

Query: 306 GGDWMMEIYDQTHPSITQKD 325
               + + Y +  P     D
Sbjct: 282 ----LKQSYIEAFPRTRGDD 297


>gi|312876773|ref|ZP_07736752.1| tyrosine recombinase XerD [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796504|gb|EFR12854.1| tyrosine recombinase XerD [Caldicellulosiruptor lactoaceticus 6A]
          Length = 291

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 79/308 (25%), Positives = 142/308 (46%), Gaps = 18/308 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +   + +  +L+ +   S+ T+ SY  D ++++ FL     + I I+ +   S   + A+
Sbjct: 1   MSIIEAFGNHLQRQNRFSQNTISSYLRDAKKYIEFL-----DNIKIK-LENTSQATLIAY 54

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I   +     + ++ R++  +K F  +LK + I     I  +   K   S P+ L   + 
Sbjct: 55  IISMQKSGKSNSTIVRAIVSLKVFYDFLKTQNIVDIGKIE-IEPPKLEKSPPQILTRDEV 113

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+         E      R+ A+L LLY  G+R+SE ++L   +I  +   +  + K 
Sbjct: 114 EKLL-----SCPKEDDIKGIRDKAMLELLYATGIRVSELINLNLDDINLEHGYIICKNKK 168

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
              R++P+      A+  Y     P+      +  LF    G+ +    F + ++   + 
Sbjct: 169 R-DRVIPIGSYAISAVERYLRHSRPYLAKNKDEEALFLNFNGERMTRQGFWKIVKFYAQS 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    T H LRHSFATHL+ NG D+R++Q +LGH  +STTQ Y  V +      + E+
Sbjct: 228 AGIDKEITPHVLRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVAN----VKLKEV 283

Query: 314 YDQTHPSI 321
           Y +THP  
Sbjct: 284 YQKTHPRA 291


>gi|84622421|ref|YP_449793.1| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|161899015|ref|YP_199478.2| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84366361|dbj|BAE67519.1| integrase-recombinase XerD [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 323

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 88/326 (26%), Positives = 146/326 (44%), Gaps = 24/326 (7%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
              LP + + +     + +L     E+G+++ TL+SY  D      +             
Sbjct: 13  AQQLPPLQAAD-AGVIERFLDRFWAEQGVARQTLESYRRDLEGLARW------RAGAGGG 65

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +  +    +  ++  R       RS  R LS +++F  +  +  + ++     +   +  
Sbjct: 66  LLGIDRVALFDYLRWRAQANYSPRSTARLLSTLRAFYGWCLRDGVRSDDPTALIDPPQLP 125

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            SLP+AL E Q   L+                R+ A+L L+Y  GLR+SE ++L    + 
Sbjct: 126 RSLPKALTESQIEALL-----AAPEVDTPAGLRDRAMLELMYAAGLRVSELVNLPAVGVN 180

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-------QLPLFRGIRG 235
             Q  LR+ GKG K R+VPL    +  +  Y       L  N        Q+PLF     
Sbjct: 181 LRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARPLLAANKPVAAVDGQVPLFIDAAR 240

Query: 236 KPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           + L+   F   +++     G+ P   + H LRHSFATHLL++G DLR++Q +LGH  LST
Sbjct: 241 QALSRQHFWALVKRYAAVAGIDPAMVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLST 300

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPS 320
           TQIYT V  ++    + +++   HP 
Sbjct: 301 TQIYTLVARQH----LQKLHASHHPR 322


>gi|160934248|ref|ZP_02081635.1| hypothetical protein CLOLEP_03119 [Clostridium leptum DSM 753]
 gi|156866921|gb|EDO60293.1| hypothetical protein CLOLEP_03119 [Clostridium leptum DSM 753]
          Length = 309

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 84/326 (25%), Positives = 142/326 (43%), Gaps = 21/326 (6%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M  N+  E +    L   Q++L+N   ++ +S  TLQSY  D   F I+LA        I
Sbjct: 1   MIQNSKEEKLMSAFLTGFQDYLKN---QKCVSSNTLQSYVRDIEHFSIYLAAE-----NI 52

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
                ++  +++ +I           ++ R+++ I+ F +YL    I +E+    ++  K
Sbjct: 53  DNPASVTADDLQHYIESLEKLGRSASTVTRNIASIRCFYQYLILINIASENPAKEIKREK 112

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                P  L  ++   L+D       +       R+ A++ LLY  G+R+SE + L  Q+
Sbjct: 113 TEKKPPSILTGEEIRLLLDQ-----PNVMDPKGCRDKAMIELLYATGIRVSELIDLNLQD 167

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF---DLNLNIQLPLFRGIRGKP 237
           I      L  +      RI+P+      ++ +Y         D        LF  + G  
Sbjct: 168 INLKTGMLHCRRPKS-DRIIPIYAEAVASLSDYISRVRRIIIDPVGKDGQALFVNLNGHR 226

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L    F + I+       +    T HTLRHSFA HLL NG DL+ IQ +LGH  +++TQ+
Sbjct: 227 LTRQGFWKIIKGYAAQARITKDITPHTLRHSFALHLLQNGADLKDIQEMLGHADIASTQV 286

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQ 323
           Y N+ +         +Y+  HP   +
Sbjct: 287 YANLLNNRF----QNVYNHCHPMAKK 308


>gi|56461653|ref|YP_156934.1| site-specific recombinase XerC [Idiomarina loihiensis L2TR]
 gi|56180663|gb|AAV83385.1| Site-specific recombinase XerC [Idiomarina loihiensis L2TR]
          Length = 300

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 93/312 (29%), Positives = 156/312 (50%), Gaps = 15/312 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L   +Q W+Q L+ ERGL++LTL++Y+      LI       E   I   + L    I 
Sbjct: 2   KLHDWQQKWMQQLQGERGLAELTLKNYQR-----LIAADLTALELQKITEPKALRVPVIE 56

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
             +   R   +G+RS+   LS  ++F +++ +     ++  +++   K    LP+ L+  
Sbjct: 57  RLLVGWRRNGLGERSIALKLSAWRTFCQFMVESNAMDDNPAMSVSAPKIPKRLPKNLDVD 116

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
                     L        +  R++A++ LLY  G+R++E +SL   +I      LR+ G
Sbjct: 117 SISH------LLDLPTDDDLAIRDAAMMELLYASGIRLAELVSLDLDHIDHRMMQLRVTG 170

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K RIVP      KA+ ++  +    LN   +L LF   R + ++P   Q+ +    +
Sbjct: 171 KGSKTRIVPFGRCAEKALKKWLSVRQAWLNQKPELALFVSKRLQRISPRTVQQRLNYWGK 230

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+      H LRHSFA+H+L + GDLR++Q +LGH  LSTTQ+YT+++ K     +  
Sbjct: 231 QQGVVGDLHPHKLRHSFASHMLESSGDLRAVQEMLGHANLSTTQVYTHLDFKR----LAS 286

Query: 313 IYDQTHPSITQK 324
           +YD  HP   +K
Sbjct: 287 VYDSAHPRARKK 298


>gi|331697596|ref|YP_004333835.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190]
 gi|326952285|gb|AEA25982.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190]
          Length = 307

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 77/319 (24%), Positives = 140/319 (43%), Gaps = 18/319 (5%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
            + +  + +    ++ +L +ERG S  TL++Y  D R+++  L      +  +  +  + 
Sbjct: 2   AVATDRVERAVDAFMAHLAVERGSSPNTLRAYGNDLRRYVAHL-----RERGVDDLAAVQ 56

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSG--IKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
             ++  F++  R+      +   + +   ++   ++  +  +  +     +     +  L
Sbjct: 57  EADVSGFVAALRSGPAPLAASSAARALAAVRGLHRFAARDGLVDDDVSRAVTPPATARRL 116

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           PR L   +   L+   +            R+ A+L LLY  G RISEA+ +   ++  + 
Sbjct: 117 PRTLTVDEVEQLLAGCI-----GDGPTGLRDRALLELLYSTGARISEAVGIDVDDLDAES 171

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVF 243
            T+ + GKG K R+VP+      A+  +       L    +    L    RG  L+    
Sbjct: 172 RTVLLHGKGGKQRVVPVGRPALAAVDAWLVRGRPALASRGRGSPALLLNARGARLSRQSA 231

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              +R      G+    + HTLRH FATHLLS G D+R +Q +LGH  ++TTQIYT+V  
Sbjct: 232 WHVLRGAAEVAGVRAEVSPHTLRHCFATHLLSGGADVRVVQELLGHASVATTQIYTHVT- 290

Query: 304 KNGGDWMMEIYDQTHPSIT 322
               D + E+Y   HP   
Sbjct: 291 ---VDTLREVYATAHPRAR 306


>gi|29840081|ref|NP_829187.1| site-specific tyrosine recombinase XerC [Chlamydophila caviae GPIC]
 gi|75539745|sp|Q823T9|XERC_CHLCV RecName: Full=Tyrosine recombinase xerC
 gi|29834429|gb|AAP05065.1| site-specific recombinase, phage integrase family [Chlamydophila
           caviae GPIC]
          Length = 312

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 92/319 (28%), Positives = 146/319 (45%), Gaps = 22/319 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-------------EKITI 60
           ++     +L  L+  +  S  TL++Y  D   F  FL    E              K T 
Sbjct: 1   MISAFYAFLDYLKNIKTASPHTLRNYCIDLNSFKSFLEKQGELSPSSPICLLTKERKETE 60

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
                 +   +R ++ +   +    R++KR LS IKSF +Y  K +I  E     +   +
Sbjct: 61  LPFSLFTKDSVRLYVLELMQENKAKRTIKRRLSAIKSFSQYCIKNRIIFEDPTETIHGPR 120

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LP  +  +Q   L+      T   +K+   R+  +L L Y  GLRISE +++   +
Sbjct: 121 LPKELPSPITYEQVEILM-----ATPDLSKYTGFRDRCLLELFYSSGLRISEIVAINHWD 175

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I  + + +RI+GKG K R+VP+ P   + + +Y                F    GK L  
Sbjct: 176 IDFNSNLIRIRGKGKKERLVPMTPHAAQWLQQYLHHPERAHVEQDPQAFFLNRFGKRLTT 235

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               R  ++  R  GL  S T HT+RH+ ATH L NG DL++IQ++LGH  L TT IYT+
Sbjct: 236 RSIDRKFQKYLRQSGLSGSITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTH 295

Query: 301 VNSKNGGDWMMEIYDQTHP 319
           V+ K       + ++++HP
Sbjct: 296 VSMKLK----KQTHEESHP 310


>gi|291548057|emb|CBL21165.1| tyrosine recombinase XerD subunit [Ruminococcus sp. SR1/5]
          Length = 294

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 141/305 (46%), Gaps = 16/305 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E + ++  L   +  S  T  SY+ D ++  ++ A        I  IR +   E+  ++S
Sbjct: 4   EIREFITYLHNRKRTSHNTEVSYQRDLKKMAVYFADR-----GIYDIRDVGELELEGYLS 58

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                +    ++ R+++ I++  +YL +         L ++  K    +P  L   +   
Sbjct: 59  YMERGQFASSTISRNVASIRALFQYLYQENRIERDPSLELKPPKVEKRMPEILTVDEVDR 118

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+    L+T         R+SA+L LLY  G+R+SE L L  +++      + +    DK
Sbjct: 119 LLKQPDLNTPK-----GIRDSAMLELLYATGMRVSELLRLNLEDLNLRLGYV-VCHDEDK 172

Query: 197 IRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R++P+    + A+ +Y        +  N    LF    GK ++   F + ++      G
Sbjct: 173 ERVIPIGNVCKTAMEKYLKEARGKFVKENETESLFTNCSGKSMSRQGFWKVLKGYAEEAG 232

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T HTLRHSFA H+L NG D++S+Q +LGH  +STTQ+Y N     G   M ++Y 
Sbjct: 233 IQHDITPHTLRHSFAAHMLQNGADVKSVQEMLGHSDISTTQVYLNF----GVAKMRDVYM 288

Query: 316 QTHPS 320
           + HP 
Sbjct: 289 KAHPR 293


>gi|188578603|ref|YP_001915532.1| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|58425056|gb|AAW74093.1| integrase-recombinase XerD [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188523055|gb|ACD61000.1| tyrosine recombinase XerD [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 336

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 90/326 (27%), Positives = 148/326 (45%), Gaps = 24/326 (7%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
              LP + + +     + +L     E+G+++ TL+SY  D      + A      + I  
Sbjct: 26  AQQLPPLQAAD-AGVIERFLDRFWAEQGVARQTLESYRRDLEGLARWRAGAGGGLLGIDR 84

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +       +  ++  R       RS  R LS +++F  +  +  + ++     +   +  
Sbjct: 85  VA------LFDYLRWRAQANYSPRSTARLLSTLRAFYGWCLRDGVRSDDPTALIDPPQLP 138

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            SLP+AL E Q   L+                R+ A+L L+Y  GLR+SE ++L    + 
Sbjct: 139 RSLPKALTESQIEALL-----AAPEVDTPAGLRDRAMLELMYAAGLRVSELVNLPAVGVN 193

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-------QLPLFRGIRG 235
             Q  LR+ GKG K R+VPL    +  +  Y       L  N        Q+PLF     
Sbjct: 194 LRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARPLLAANKPVAAVDGQVPLFIDAAR 253

Query: 236 KPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           + L+   F   +++     G+ P   + H LRHSFATHLL++G DLR++Q +LGH  LST
Sbjct: 254 QALSRQHFWALVKRYAAVAGIDPAMVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLST 313

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPS 320
           TQIYT V  ++    + +++   HP 
Sbjct: 314 TQIYTLVARQH----LQKLHASHHPR 335


>gi|295426272|ref|ZP_06818932.1| tyrosine recombinase XerC [Lactobacillus amylolyticus DSM 11664]
 gi|295064011|gb|EFG54959.1| tyrosine recombinase XerC [Lactobacillus amylolyticus DSM 11664]
          Length = 307

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 83/309 (26%), Positives = 142/309 (45%), Gaps = 15/309 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  L+ ER  SK T+ SY+ D  +   F      E        ++   +I  ++     
Sbjct: 10  FISYLKNERQYSKNTILSYQTDLLEAKSFWR----ENGGFVDWDKIQTRDIEVYLQSMAE 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +K+   S  R +S ++SF ++L KRK+        +    +   LP+     +   ++  
Sbjct: 66  RKLSRNSQMRKMSSLRSFYRFLAKRKLIKVDPTQTIVLRTEERKLPQFFYAPEMKQVI-- 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
               +      +  RN A+  L Y  G+R+SE  SL    +  D   + + GKG+K R V
Sbjct: 124 ---SSLQGNTALTERNLALFELFYTTGMRVSEVSSLKINQVDFDLQMILVHGKGNKDRYV 180

Query: 201 PLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
                 + A+  Y +     L  +   Q  +F   +G+PL     +  +++     G+  
Sbjct: 181 AFDDKTKSALQNYLENARPKLLGSKADQDFIFLNNQGQPLTDRGIEYIMQRTFNKAGISG 240

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRH+FAT +L+NG DLR++Q +LGH  LSTTQIYT+V   +    + + Y +  
Sbjct: 241 KVHPHELRHTFATAMLNNGADLRTVQELLGHENLSTTQIYTHVTMAH----LQDEYQKFF 296

Query: 319 PSITQKDKK 327
           P  ++KDKK
Sbjct: 297 PRNSRKDKK 305


>gi|104774158|ref|YP_619138.1| site-specific recombinase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116514251|ref|YP_813157.1| integrase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|122275017|sp|Q04A03|XERC_LACDB RecName: Full=Tyrosine recombinase xerC
 gi|123378433|sp|Q1G9V2|XERC_LACDA RecName: Full=Tyrosine recombinase xerC
 gi|103423239|emb|CAI98072.1| Site-specific recombinase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116093566|gb|ABJ58719.1| tyrosine recombinase XerC subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 295

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L+ ER  S  T+ +Y+ D      F     +E        Q+S  ++  ++   
Sbjct: 5   EQFLSYLKNERSYSPKTVLAYQKDLAAAKKFW----QENGGFPGWDQISRRDLEIYLLA- 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             QK+   +L R LS +KSF ++L +R +      + ++  +    LP    + +   ++
Sbjct: 60  TGQKLASSTLSRKLSSLKSFYRFLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQVI 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                 + ++ K +  RN AI+ L Y  G+R+SE   L  + +  +   + + GKG+K R
Sbjct: 120 -----RSLNDGKPLTVRNRAIVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDR 174

Query: 199 IVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            V      +K + EY       L  N      +F    G+P++     + ++Q+ +  GL
Sbjct: 175 YVFFDQESKKYLEEYLQAARPSLLKNEPDTGAVFLNKLGRPISSRGIAKAVQQIFQKAGL 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V+ ++        Y Q
Sbjct: 235 TAGAHPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQHLTVE----YRQ 290

Query: 317 THPS 320
             P 
Sbjct: 291 HFPR 294


>gi|255291939|dbj|BAH90427.1| tyrosine recombinase [uncultured bacterium]
          Length = 320

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 86/336 (25%), Positives = 157/336 (46%), Gaps = 28/336 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M            L+   + +L+++ +E+ L+  T+  Y  D  +   F     ++ +  
Sbjct: 1   MSAGAALRPADAALI---ERYLEHVRVEKRLAARTVTLYGLDLDKLGQFA---VQDDVG- 53

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             +  +  T +R ++++        R +   LSG + F  +L ++ +   + + ++R  +
Sbjct: 54  --LTAVQGTHVRRWVARMHAGGRSGRGIALILSGWRGFYAWLGRQGLIAANPVQDVRAPR 111

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP-- 178
           +   LP+AL   +A+ L ++V      +  W+DAR++A++ LLYG GLR+ E   L    
Sbjct: 112 QPRPLPKALGVDEAVQLAEHV---AESDDPWLDARDAAMVELLYGSGLRVGELAGLDLTA 168

Query: 179 ---------QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLP 228
                      I    + +++QGKG K R+VPL      A+  +  L             
Sbjct: 169 SDAALQAGRGWIDLAGAEVQVQGKGAKRRVVPLGRQAVAALRHWLALRGQVAAVDAAAQA 228

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LF G RG  L      + +++     GL      H LRHSFA+HLL + GDLR++Q +LG
Sbjct: 229 LFIGRRGTRLTAQAIWQRLKRRSLQAGLATPVHPHMLRHSFASHLLQSSGDLRAVQELLG 288

Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           H  + TTQ+YT ++ ++    + + YD  HP   ++
Sbjct: 289 HANIGTTQVYTRLDFQH----LAQAYDAAHPRARKR 320


>gi|167917076|ref|ZP_02504167.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           BCC215]
          Length = 310

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 83/328 (25%), Positives = 162/328 (49%), Gaps = 29/328 (8%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + +  +     ++L NL   R LS  TL++Y  +  +         +     + +  L+ 
Sbjct: 1   MTAKPIADPIVDYLSNLRHVRKLSDHTLRAYAHELDEL--------KRLANGRPLDSLTA 52

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++R+ +++     +  RS+   LS  ++F ++  +      + +  +R  K++ +LP+A
Sbjct: 53  IDMRSAVARAHAGGLSARSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKA 112

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI------- 181
           L+      L+D     T+   +     + AIL L Y  GLR++E + L  + +       
Sbjct: 113 LSVDDTAALMDAPTAGTAESLR-----DHAILELFYSSGLRLAELIGLDIEYVKDGAYRS 167

Query: 182 ----MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                  ++ + + GKGDK R VP+      A+  +  +    +  + + PLF  +RG  
Sbjct: 168 AGWLDLAEAEVTVHGKGDKERKVPVGRKALDALHAWLAVRGELVKHDPR-PLFLSVRGNR 226

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           ++PGV +  +++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  +S TQ+
Sbjct: 227 MSPGVVRERVKRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQV 286

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           YT+++ ++    + +IYD  HP   ++D
Sbjct: 287 YTSLDFQH----LAKIYDSAHPRAKKRD 310


>gi|313623983|gb|EFR94082.1| tyrosine recombinase XerC [Listeria innocua FSL J1-023]
          Length = 300

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 143/305 (46%), Gaps = 15/305 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L  ER  S+ T  +YE D   F  FL      +  I   +Q+++ ++R ++++ 
Sbjct: 9   KRFLDYLHSERNYSEHTSTAYENDLSDFRRFL-----NEQAITEYQQVTFLDVRIYLTEL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + +     ++ R +S ++SF  +L +  + TE+    + + K    LP+    ++   L 
Sbjct: 64  KQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEMEALF 123

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             V      + + +  R+  IL +LYG G+R+SE   +   ++      + I+GKG+K R
Sbjct: 124 QVVY----EDNETLTLRDRVILEVLYGTGIRVSECAGIMLSDLDTSYQAILIRGKGNKER 179

Query: 199 IVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            VP       AI +Y       +         L     G PL     +  + ++     L
Sbjct: 180 YVPFGAYAEDAITDYLSGRTELMTRFKKTHDSLLINHYGDPLTTRGIRYCLTKIISKASL 239

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRH+FAT LL+NG D+R++Q +LGH  LS+TQIYT+V  ++    +   Y +
Sbjct: 240 TRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----LKSTYMK 295

Query: 317 THPSI 321
            HP  
Sbjct: 296 HHPRA 300


>gi|289523581|ref|ZP_06440435.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503273|gb|EFD24437.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 297

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 86/311 (27%), Positives = 151/311 (48%), Gaps = 21/311 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S  +      +L+ L+   G +  T+ +Y  D  QF+ ++         ++ + ++   
Sbjct: 1   MSENISSSVDAFLEYLKYVSGRTDNTVINYAVDLSQFVDYVISQ-----GVEEVEKIEQA 55

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            IRAF+ +         S+ R LS ++S+  +L +    T      +R  K+   LPRAL
Sbjct: 56  HIRAFLRELAAYGYSKSSVLRKLSSLRSWTNFLLQSGKLTSDPTKGVRGPKEPKRLPRAL 115

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
             +    +++N            + R+ AIL LLYGCGLR++E ++L  +++  ++  LR
Sbjct: 116 AYEDVKMMLENG------PNGEFEIRDRAILELLYGCGLRVAELVALDWEDVDIEERWLR 169

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           ++GKG+K R+VP+    +KA+ E+           +  PLF G   + +      R + +
Sbjct: 170 VKGKGEKERLVPMGRHAQKALREWQVFL-----GKLSGPLFPGDGCERIAVRTVHRVVSR 224

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             + +GL    + H LRHSFATH+L  G  LR +Q +LGH  L TTQ Y  ++ +     
Sbjct: 225 AAKRVGLA-GVSPHMLRHSFATHMLEGGASLRVLQELLGHQSLVTTQRYLKISYEQ---- 279

Query: 310 MMEIYDQTHPS 320
           + + Y   HP 
Sbjct: 280 LKKSYINAHPR 290


>gi|257094620|ref|YP_003168261.1| tyrosine recombinase XerD [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257047144|gb|ACV36332.1| tyrosine recombinase XerD [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 304

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 89/313 (28%), Positives = 141/313 (45%), Gaps = 17/313 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
                L E   +   L +E GL+K +L SY  D  Q   +LA        + ++  +   
Sbjct: 6   ADPADLAEIDAFCDTLWLEDGLAKASLSSYRSDLGQLAGWLAEQR-----LGSLCGIDEA 60

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +  F++    Q +   S  R LS ++ F ++       +    L +    K + LP+ L
Sbjct: 61  TLLRFVATL-AQTLRASSQARYLSTLRRFYRHQVAHGRRSSDPTLRIAMPVKPSRLPKVL 119

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +E Q   L+             +  R+ A+L  LY  GLR+SE + L    +  D   +R
Sbjct: 120 SELQVERLL-----GAPPSETPLGQRDRAMLETLYATGLRVSELVGLKLHEVSLDMGVVR 174

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           + GKG K R+VPL    R  +  +  D     L       +F   RG  +    F + I+
Sbjct: 175 VFGKGAKERLVPLGEEARDWLRRHLADGRLALLAGRQSDDVFVTARGAAMTRQAFWQLIK 234

Query: 249 QLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +     G+ P   + H LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +   
Sbjct: 235 RYALQAGMDPARLSPHVLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER-- 292

Query: 308 DWMMEIYDQTHPS 320
             +  ++ Q HP 
Sbjct: 293 --LKILHAQHHPR 303


>gi|296114852|ref|ZP_06833500.1| site-specific tyrosine recombinase XerC [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295978558|gb|EFG85288.1| site-specific tyrosine recombinase XerC [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 324

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 109/322 (33%), Positives = 158/322 (49%), Gaps = 30/322 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  +  ER  S  T ++Y  D  +FL FL  +   ++ +  +  LS  ++RA+++    
Sbjct: 10  FLDWMADERRASPRTTEAYRGDLHRFLDFLGGHLGGEVDVAALDALSLADLRAWLAFEHD 69

Query: 81  QKIGDRSLKR-------------SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
           Q +  R   R              +S ++SF +YL +           +   +   +LPR
Sbjct: 70  QALRPRPGHRVTTRDRAARTRARRVSALRSFFRYLARHHGVDNPAPALLAAPRVKKTLPR 129

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD---- 183
            L+ + AL +     +     T     R+ A+  LLYGCGLRISEALSL   ++      
Sbjct: 130 PLSHEDALEVPQG--VGEIAHTPMARMRDGALFLLLYGCGLRISEALSLDVADLDRAMAL 187

Query: 184 ----DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
               D+  LRI GKG K R+VPLLP V +A+ E+    P  +      PLF G+RG  L 
Sbjct: 188 GGGADEGVLRIMGKGGKERMVPLLPVVGRALREWRRHHPAPVAG---APLFPGVRGGRLQ 244

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
             V QR +R  R   GLP   T H LRHSFATHL+  G DLR IQ +LGH  LSTTQ YT
Sbjct: 245 AAVAQRAMRTWRHMAGLPDHATPHALRHSFATHLMEGGADLRVIQELLGHASLSTTQRYT 304

Query: 300 NVNSKNGGDWMMEIYDQTHPSI 321
             +       +++++ + HP  
Sbjct: 305 LADESR----LLDVWTRAHPRA 322


>gi|254251586|ref|ZP_04944904.1| Site-specific recombinase XerD [Burkholderia dolosa AUO158]
 gi|124894195|gb|EAY68075.1| Site-specific recombinase XerD [Burkholderia dolosa AUO158]
          Length = 316

 Score =  244 bits (624), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 89/323 (27%), Positives = 143/323 (44%), Gaps = 20/323 (6%)

Query: 2   EGNNLPEIVSFELLKERQN---WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI 58
           E +      S  LL  R +   +   L +E GL++ TL +Y  D   F  +LA   +   
Sbjct: 9   EADGAEGAASPALLASRASIDVFCDALWLEHGLARNTLDAYRRDLMLFSQWLAATHD--- 65

Query: 59  TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
               +       +  +I+ R   K    S  R LS  + +  +  +    +    L + +
Sbjct: 66  --APLDAADEAMVTGYIAARSDGK--ATSSNRRLSVFRRYYGWAVREHRASADPTLRITS 121

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            K++   P  L+E Q   L+             +  R+  +L L+Y  GLR+SE ++L  
Sbjct: 122 AKQAARFPSTLSEAQVEALL-----GAPDIDTPLGLRDRTMLELMYASGLRVSELVTLKT 176

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKP 237
             +  ++  +R+ GKG K R+VP        I  Y     P  L       LF   RG  
Sbjct: 177 VEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERYLRDARPALLGARAADALFVTARGDG 236

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    F   I++  R+  +    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQI
Sbjct: 237 MTRQQFWNIIKRHARHADVRAHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQI 296

Query: 298 YTNVNSKNGGDWMMEIYDQTHPS 320
           YT+V  +     +  ++ Q HP 
Sbjct: 297 YTHVARER----LKTLHAQHHPR 315


>gi|226946779|ref|YP_002801852.1| site-specific tyrosine recombinase XerC [Azotobacter vinelandii DJ]
 gi|259710429|sp|C1DJ58|XERC_AZOVD RecName: Full=Tyrosine recombinase xerC
 gi|226721706|gb|ACO80877.1| tyrosine recombinase XerC [Azotobacter vinelandii DJ]
          Length = 299

 Score =  244 bits (624), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 91/314 (28%), Positives = 144/314 (45%), Gaps = 17/314 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  +   +L +L  ER +S+ TL  Y  D  +          E+  +     L    +R 
Sbjct: 1   MQADLDAFLDHLRNERQVSQHTLDGYRRDLAKVHAHC-----EREGLDAWSALDAGRLRR 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            I++   Q    RSL R LS ++ F +YL +           +   K    LPR L+  +
Sbjct: 56  LIARLHLQGHSSRSLARLLSALRGFYRYLLREGRCRHDPAAGLSPPKGERRLPRTLDADR 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D      + E  +I  R+ A+L L Y  GLR+SE + L    +      +R+ GK
Sbjct: 116 TQQLLDG-----AVEDDFIARRDQAMLELFYSSGLRLSELVGLDLDRLDLAAGLVRVHGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R +P+    R+A+  +  L            LF G  G+ L P   Q  +RQ    
Sbjct: 171 GNKARDLPIGSKAREALRAWLSLR--AQARPADGALFVGRTGRRLTPRAVQLRVRQAGVR 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRHSFA+HLL +  DLR++Q +LGH  ++TTQIYT+++ ++    +  +
Sbjct: 229 -ELGQHLHPHMLRHSFASHLLESSQDLRAVQELLGHADIATTQIYTHLDFQH----LAAV 283

Query: 314 YDQTHPSITQKDKK 327
           YDQ HP   ++   
Sbjct: 284 YDQAHPRARRRKDD 297


>gi|260223080|emb|CBA33286.1| Tyrosine recombinase xerD [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 297

 Score =  244 bits (624), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 84/308 (27%), Positives = 146/308 (47%), Gaps = 23/308 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              ++  L +E GLSK TLQ+Y  D   F   LA         + +      +++ + + 
Sbjct: 7   VDAFIDALWLEEGLSKNTLQAYRRDLTLFAGHLA--------PKPLYGAQEHDLQGYFAA 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  +     +  R L+ +K F ++  +     +   L ++  K++  +P+ L E Q   L
Sbjct: 59  RHAET-KATTANRRLTVLKRFFRWALREGHIAQDPTLKLQAAKQALRVPKTLTEAQVEAL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +     +     + +  R+ A+L LLY  GLR+SE ++L    +  ++  LR+ GKG K 
Sbjct: 118 L-----NAPDTNEALGIRDKAMLELLYASGLRVSELVTLRMVQLGLNEGVLRVTGKGSKE 172

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKP----LNPGVFQRYIRQLRR 252
           R+VP        +  Y        L       +F  +RG      ++  +F   +++   
Sbjct: 173 RLVPFGEVAGLWLSRYLAGPRAELLAAKQSADVFVTVRGSKSGTAMSRIMFWGLVKRYAL 232

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+ +  + HTLRH+FATHLL++G DLRS+Q +LGH  +STT IYT++      D +  
Sbjct: 233 QAGIRVPLSPHTLRHAFATHLLNHGADLRSVQMLLGHADISTTTIYTHI----ARDRLAS 288

Query: 313 IYDQTHPS 320
           ++ Q HP 
Sbjct: 289 LHAQHHPR 296


>gi|308455404|ref|XP_003090242.1| hypothetical protein CRE_23788 [Caenorhabditis remanei]
 gi|308265127|gb|EFP09080.1| hypothetical protein CRE_23788 [Caenorhabditis remanei]
          Length = 319

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 86/322 (26%), Positives = 146/322 (45%), Gaps = 19/322 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L      +L  +E E G S  T+++Y  D      +L     +      + +L    +R 
Sbjct: 3   LGTAIDGFLSAVEFEYGYSPQTVRAYRRDLLSLSEYLEASAPDSGPESDVSELGLETLRD 62

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++  R+ Q +   +L R+++ +KSF K+L++ ++   +    +R  K  ++LPR L++ Q
Sbjct: 63  WLWSRQEQGLAQSTLARNVATLKSFGKWLEQHRLVAGNPASRLRTPKAPSALPRVLSDDQ 122

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++D      +     I  R+ A+L LLY   LR+SE   L    +   Q T+R+ GK
Sbjct: 123 ISRILDRAE-SLARGGDPIAVRDRALLELLYATALRVSEVCGLDLSGLDRIQRTVRVVGK 181

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL--------------NLNIQLPLFRGIRGKPLN 239
           G K R+VP       A+ EY      +L                +    +F    G  + 
Sbjct: 182 GAKERVVPFGAPAALALEEYLSSARSELMNVATDAASSAGLVRESATTAVFLSASGSRIQ 241

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                R + +             HTLRH+ ATHLL+ G DLR +Q +LGH  L++TQ+YT
Sbjct: 242 AHQIYRLVARSLEQEPGSGPRGPHTLRHTAATHLLNGGADLRVVQEMLGHSSLASTQVYT 301

Query: 300 NVNSKNGGDWMMEIYDQTHPSI 321
           +V+++     + + Y Q HP  
Sbjct: 302 HVSTER----LAQSYRQAHPRA 319


>gi|198277388|ref|ZP_03209919.1| hypothetical protein BACPLE_03600 [Bacteroides plebeius DSM 17135]
 gi|198269886|gb|EDY94156.1| hypothetical protein BACPLE_03600 [Bacteroides plebeius DSM 17135]
          Length = 303

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 85/302 (28%), Positives = 144/302 (47%), Gaps = 16/302 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            + Q L++E+ LS  T+++Y  D  +   FL   +          +++   +  F +  R
Sbjct: 12  KYRQYLKLEKSLSANTVEAYLTDLDKLFAFLELESIH------FTEVTLENLETFSAGLR 65

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              I  RS  R LSGI+SF ++L       +     + + +    LP  L  ++   L+ 
Sbjct: 66  DIGIHPRSQARILSGIRSFFRFLLLEDYIQQDPSELLESPQIGKHLPDVLTVEEIDRLI- 124

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                +   +     RN AIL  LY CGLR+SE  +L   ++   +  ++++GKG K R+
Sbjct: 125 ----GSIDRSTREGQRNRAILETLYSCGLRVSELCNLKLSDLYLKEKFIKVEGKGSKQRL 180

Query: 200 VPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+ P     +  Y+      L     +  +F    GK ++  +    I++L   +GL  
Sbjct: 181 VPISPRAIHELELYFPDRNEGLIKPGYEDFVFISRFGKNISRIMVFHIIKELAEQIGLKK 240

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + + HT RHSFATHLL  G +LR+IQ +LGH  + TT+IYT+++       ++E     H
Sbjct: 241 TISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHLDRSRLRQEILE----HH 296

Query: 319 PS 320
           P 
Sbjct: 297 PR 298


>gi|85711580|ref|ZP_01042638.1| Site-specific recombinase XerC [Idiomarina baltica OS145]
 gi|85694732|gb|EAQ32672.1| Site-specific recombinase XerC [Idiomarina baltica OS145]
          Length = 302

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 93/314 (29%), Positives = 161/314 (51%), Gaps = 15/314 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L + +  WLQ LE ERGL++LT+++Y+      L  +     ++  ++   QL+ +   
Sbjct: 2   KLHEIQHRWLQQLEGERGLAQLTIKNYQR-----LTGIDIEQLDRQGVEHAHQLTRSIFE 56

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
             +   R   +G+RS+   LS  ++F++Y+   +   +  +  ++  K    LP+ L+  
Sbjct: 57  RLLVGWRRDGLGERSIALKLSAWRTFVQYMLDYQHLNDDPLSGLKAPKIPKRLPKNLDVD 116

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
                     L        +  R+SA++ LLY  GLR++E +SL   +I      LR+ G
Sbjct: 117 SISH------LLELPLDDELAIRDSAMMELLYSSGLRLAELVSLDMDSIDLRYGQLRVVG 170

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K RIVP+     KAI  +  +    L +  ++ LF   R + ++    Q+ +    +
Sbjct: 171 KGSKTRIVPVGKIAIKAIQRWLKVRANWLAMRPEVALFISQRNQRISQRTVQQRLNFWGK 230

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+  +   H LRHSFA+H+L + GDLR++Q +LGH  LSTTQ+YT+++ K     + E
Sbjct: 231 QQGVVGNLHPHKLRHSFASHMLESSGDLRAVQELLGHANLSTTQVYTHLDFKR----LAE 286

Query: 313 IYDQTHPSITQKDK 326
           +YD  HP  T+  K
Sbjct: 287 VYDSAHPRATKGKK 300


>gi|160896902|ref|YP_001562484.1| integrase family protein [Delftia acidovorans SPH-1]
 gi|160362486|gb|ABX34099.1| integrase family protein [Delftia acidovorans SPH-1]
          Length = 365

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 94/350 (26%), Positives = 161/350 (46%), Gaps = 40/350 (11%)

Query: 2   EGNNLPE--IVSFELLKE--------RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA 51
           + + LPE  I + +L  E           +L+++ +++ L+  T   Y  D  +      
Sbjct: 6   DRDGLPEGDIPAEDLAAENLALLPAAVHAYLEHVRVQKRLADRTCALYALDMARLCTMAR 65

Query: 52  FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111
              +E      +  L    IR F+++  ++    R +   LSG +SF ++  ++ +   +
Sbjct: 66  DAGQE------LLALQPAHIRRFVAQMHSRGRSPRGIALILSGWRSFFRWAAQQSLVPFN 119

Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
            +  +R  K    LP+AL    A+ L        +    WI+AR++AI  LLY CGLR+ 
Sbjct: 120 PVEGVRGPKAPKPLPKALGVDDAVQL---AAFSNAEADPWIEARDAAITELLYSCGLRVG 176

Query: 172 EALSLTPQNIMD----DQSTL-------RIQGKGDKIRIVPLLPSVRKAILEYYDLC--- 217
           E + L      D     +  +        +QGKG K R VP+  +  +A+  +  L    
Sbjct: 177 ELVGLDVAPGQDTQRQGRGWIDLQAADAHVQGKGGKRRTVPVGAAALQALQRWLALRETG 236

Query: 218 ---PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                 L  + +  LF G RG+ L        +RQ  +  GL      H LRHSFA+H+L
Sbjct: 237 LAGAAALAAHHESALFIGRRGERLGAQSVWTRLRQRGQQAGLSAGVHPHVLRHSFASHML 296

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
            + GDLR++Q +LGH  +STTQIYT ++ ++    + + Y+  HP   ++
Sbjct: 297 QSSGDLRAVQELLGHASISTTQIYTRLDFQH----LAQAYENAHPRARRQ 342


>gi|15891311|ref|NP_356983.1| site-specific tyrosine recombinase XerD [Agrobacterium tumefaciens
           str. C58]
 gi|34222927|sp|Q8U9U6|XERD_AGRT5 RecName: Full=Tyrosine recombinase xerD
 gi|15159692|gb|AAK89768.1| site-specific recombinase [Agrobacterium tumefaciens str. C58]
          Length = 331

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 87/323 (26%), Positives = 145/323 (44%), Gaps = 27/323 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L+ +  ERG +  TL SYE D      FL          Q++ +    ++ A+++ 
Sbjct: 14  LESFLEMMSAERGAAANTLSSYEHDLADLREFLGRRG------QSLTEAQTPDLSAYLTH 67

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q     S  R LS ++ F ++L    +  +     +   +K  +LP+ ++      L
Sbjct: 68  LAAQGFAATSQARRLSSMRQFYRFLYSEGLRGDDPTGIIDAPRKGLALPKTMSVADVNRL 127

Query: 138 V--DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +        T    +    R   +L LLY  G+R+SE +SL  + +  +   L I+GKG+
Sbjct: 128 LGLAAQEAATEGPGQLARIRMHLLLELLYATGMRVSELVSLPVKVLRQEGRFLMIRGKGN 187

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-------------PLFR-GIRGKPLNPG 241
           K R+V L  +  +A+ +Y            +               LF    +   L   
Sbjct: 188 KDRMVLLSRAAIEAMEKYEAGRKALSQEKSKAAASQKKTDTAESPWLFPSNSKEGHLPRQ 247

Query: 242 VFQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           VF R ++ +    GL  S  + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+
Sbjct: 248 VFARDLKDIAIRAGLTASAVSPHVLRHAFASHLLQNGADLRAVQELLGHSDISTTQIYTH 307

Query: 301 VNSKNGGDWMMEIYDQTHPSITQ 323
           V  +     + E+    HP   Q
Sbjct: 308 VLEER----LQELVQTHHPLAKQ 326


>gi|323527182|ref|YP_004229335.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1001]
 gi|323384184|gb|ADX56275.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1001]
          Length = 314

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 137/304 (45%), Gaps = 17/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +   L +E GLS+ TL +Y  D R F  +LA          ++   S  ++ A+ + 
Sbjct: 26  IDAFCDALWLEHGLSRNTLDAYRRDLRLFSEWLAQTRS-----ASLDTASEADLNAYSAA 80

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  QK    S  R LS  + +  +  +         L +R+ K+    P  L+E Q   L
Sbjct: 81  R--QKDKSTSANRRLSVFRRYYGWAVREHRAKVDPTLRIRSAKQPPRFPSTLSEAQVEAL 138

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +             +  R+  +L L+Y  GLR++E ++L    +  ++  +R+ GKG K 
Sbjct: 139 L-----GAPDIETPLGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKE 193

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R++P        I  Y     P  L       LF   R + +    F   I++     G+
Sbjct: 194 RLIPFGEEAHGWIERYLRDARPALLGARAADALFVTNRAEGMTRQQFWNIIKRHAAAAGV 253

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++  
Sbjct: 254 HAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARER----LKSLHAM 309

Query: 317 THPS 320
            HP 
Sbjct: 310 HHPR 313


>gi|294674799|ref|YP_003575415.1| tyrosine recombinase XerC [Prevotella ruminicola 23]
 gi|294473941|gb|ADE83330.1| tyrosine recombinase XerC [Prevotella ruminicola 23]
          Length = 292

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 148/304 (48%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L  ER  S LT+Q+YE   R F  ++ F  +E     +I  +    IR ++  
Sbjct: 2   INQFLDYLRYERNTSPLTVQTYEESLRDFESYVTFRDKE----LSISSVDTDLIRDWMES 57

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     ++ + LS ++SF ++  KR++        +   KKS  LP+ L E +   L
Sbjct: 58  LMDKGNSASTINKKLSALRSFYRFALKRQLVKTDPAHAVIGPKKSKPLPQFLREGEMDRL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D +      ++ + + R   IL L Y  GLR +E +SL  +++  D + L++ GK +K 
Sbjct: 118 IDGI----EWDSSFNNVRARTILLLFYEAGLRRAELVSLNDKDVDFDAAQLKVTGKRNKQ 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RIVP    + +A+ +Y      +        LF   +G+ ++     + +++    +   
Sbjct: 174 RIVPFGAELAEALKQYQTARN-EQFGETGGALFLSDKGQRISDSQVYQIVKKYLSMVTSL 232

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FAT +L+NG  L +I+S+LGH  +STT+IYT+   +     +  IY + 
Sbjct: 233 KKRSPHVLRHTFATAMLNNGAGLETIKSLLGHASVSTTEIYTHTTFEQ----LKRIYKEA 288

Query: 318 HPSI 321
           HP  
Sbjct: 289 HPRA 292


>gi|116491033|ref|YP_810577.1| tyrosine recombinase XerD subunit [Oenococcus oeni PSU-1]
 gi|290890513|ref|ZP_06553588.1| hypothetical protein AWRIB429_0978 [Oenococcus oeni AWRIB429]
 gi|116091758|gb|ABJ56912.1| tyrosine recombinase XerD subunit [Oenococcus oeni PSU-1]
 gi|290479909|gb|EFD88558.1| hypothetical protein AWRIB429_0978 [Oenococcus oeni AWRIB429]
          Length = 302

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 151/304 (49%), Gaps = 16/304 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++ + L  E+GL + +++SY+ D  +F    A+  +E I +  + + +   I  +++  +
Sbjct: 14  DYTRYLRTEQGLLENSIKSYKQDLSEF---GAYIQKENILLVKVDRFT---ILDWLNYLQ 67

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                + S+   +S ++ F  YL   +      +L +   KK++ LP+ L   +   ++ 
Sbjct: 68  NSGKSNNSIVHMVSSLRKFFAYLSDDQQIQIDPMLKVTTPKKNSHLPQVLTATEIEAVL- 126

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                    +  +  RN A+L  +Y  G R+SE  +L   ++ D+   +   GKG K RI
Sbjct: 127 ----AVPDISTTLGLRNRALLETMYATGFRVSEICNLKLADLHDELGLITTIGKGQKQRI 182

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+       I +Y+      L  + + P LF    G  ++     + ++++    G+  
Sbjct: 183 VPIGEMSLLYISKYFKESRPILLKDKESPYLFLNDHGHRISRQGIFKLVKEIAIKAGIDK 242

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HTLRHSFAT+LL NG DLR +Q +LGH  +STTQIYT+V+ K+    + E Y++ H
Sbjct: 243 DISPHTLRHSFATNLLENGADLRIVQELLGHSDISTTQIYTHVSQKH----IREQYNRFH 298

Query: 319 PSIT 322
           P   
Sbjct: 299 PRAK 302


>gi|163851935|ref|YP_001639978.1| tyrosine recombinase XerD [Methylobacterium extorquens PA1]
 gi|163663540|gb|ABY30907.1| tyrosine recombinase XerD [Methylobacterium extorquens PA1]
          Length = 328

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 85/315 (26%), Positives = 137/315 (43%), Gaps = 22/315 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L  L  ERG +  TL +Y  D   +L +LA             +    ++RA+I+  
Sbjct: 17  QLFLDMLAAERGAAANTLAAYRRDLDDYLGYLAQ------GGIDPEEAQAEQVRAYIASL 70

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   S  R LS I+ F ++L             +   +++  LP+ L+  +   L+
Sbjct: 71  EPRGLKASSAARRLSCIRGFHRFLYAEGYAETDPTAPVAAPRRAKGLPKVLSVAEVDRLL 130

Query: 139 -----DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                               AR   +L LLY  GLR+SE ++L        +  L ++GK
Sbjct: 131 ATARERVEAAGDDRAEARAAARMLCLLELLYATGLRVSELVALPRSAAATRERYLVVKGK 190

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRR 252
           G + R+VPL    R+A+  +      + +      LF        L    F R ++    
Sbjct: 191 GGRERLVPLTDLAREAMRTHVAHLTAEGSW-----LFPAESESGHLTRQAFARDLKTAAA 245

Query: 253 YLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             GL     + H LRH+FA+HLL NG DLR +Q +LGH  +STTQIYT+V  +     + 
Sbjct: 246 AAGLRTDRVSPHVLRHAFASHLLQNGADLRIVQELLGHADISTTQIYTHVLDERLKGMVR 305

Query: 312 EIYDQTHPSITQKDK 326
           ++    HP   + D+
Sbjct: 306 DL----HPLNDRGDQ 316


>gi|313619210|gb|EFR90975.1| tyrosine recombinase XerC [Listeria innocua FSL S4-378]
          Length = 300

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 143/305 (46%), Gaps = 15/305 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L  ER  S+ T  +YE D   F  FL      +  I   +Q+++ ++R ++++ 
Sbjct: 9   KRFLDYLHSERNYSEHTSTAYENDLSDFRRFL-----NEQAIIEYQQVTFLDVRIYLTEL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + +     ++ R +S ++SF  +L +  + TE+    + + K    LP+    ++   L 
Sbjct: 64  KQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEMEALF 123

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             V      + + +  R+  IL +LYG G+R+SE   +   ++      + I+GKG+K R
Sbjct: 124 QVVY----EDNETLTLRDRVILEVLYGTGIRVSECAGIMLSDLDTSYQAILIRGKGNKER 179

Query: 199 IVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            VP       AI +Y       +         L     G PL     +  + ++     L
Sbjct: 180 YVPFGAYAEDAITDYLSGRIELMTRFKKTHDALLINHYGDPLTTRGIRYCLTKIISKASL 239

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRH+FAT LL+NG D+R++Q +LGH  LS+TQIYT+V  ++    +   Y +
Sbjct: 240 TRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----LKSTYMK 295

Query: 317 THPSI 321
            HP  
Sbjct: 296 HHPRA 300


>gi|298293261|ref|YP_003695200.1| integrase family protein [Starkeya novella DSM 506]
 gi|296929772|gb|ADH90581.1| integrase family protein [Starkeya novella DSM 506]
          Length = 328

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 114/315 (36%), Positives = 167/315 (53%), Gaps = 8/315 (2%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            + ++    + WL  L  ER LS  T ++Y  D   FL  LA     +  I  +  LS  
Sbjct: 20  AAPDVAVALKGWLARLGHERRLSPKTREAYARDMSIFLGLLARQIGRQPEIADLANLSPR 79

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           E+RA I+ RR + I  R+  R L+  +SF +++++  +     +  +R  + + +LPR L
Sbjct: 80  EVRAVIAARRAEGIEARTQMRFLAAARSFGRHMEREGLGKVGALTAVRAPRIARTLPRPL 139

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--DQST 187
           +   A  + D           W+  R++A++ LLYG GLRISEAL L  +++ +      
Sbjct: 140 SPADARAMADPATRAGEEREPWVLMRDAAVIALLYGSGLRISEALGLMRRDMPEPGRGDQ 199

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           + + GKG K R+VP+L  V + +  Y   CP++L  +    LFRG +G PL+P + Q  +
Sbjct: 200 IVVHGKGGKTRMVPVLRQVAEMVDAYVCACPYELEPSSS--LFRGAKGGPLSPRIVQLAV 257

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            ++R  LGLP S T H LRHSFATHLL  GGDLRSIQ +LGH  LSTTQIY  V+S    
Sbjct: 258 ERMRGGLGLPDSATPHALRHSFATHLLGRGGDLRSIQELLGHASLSTTQIYAAVDSAALM 317

Query: 308 DWMMEIYDQTHPSIT 322
                     HP   
Sbjct: 318 AAWR----AAHPRAR 328


>gi|295396859|ref|ZP_06806987.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563]
 gi|294974885|gb|EFG50584.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563]
          Length = 311

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 92/312 (29%), Positives = 151/312 (48%), Gaps = 20/312 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   L  E+  S  T+++Y  D   F  F+     +   I  + Q++Y +IR ++   + 
Sbjct: 10  FSDYLTHEKQYSPETIKAYMADLDNFQAFM-----KDAGIAQLDQVAYRDIRIYLGNLQR 64

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  +S+ R LS ++S    L  R++ +E+    ++  K    LP    E +  +L D+
Sbjct: 65  GGLSRKSISRHLSSLRSAYNLLLDRELVSENPFNYVKTAKTGLKLPDFFYESEIQSLFDS 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           V       +  I  RN A+L  LYG G R+SE   L    +      + ++GKG+K R V
Sbjct: 125 V-----QGSDPIALRNRALLEFLYGTGARVSEVRDLAINQVDLTADMVLLRGKGNKDRYV 179

Query: 201 PLLPSVRKAILEYYDLCPFDL------NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           P+      A+++Y +     L        N  + LF   +G+ L        + Q+ +  
Sbjct: 180 PIGSFCHDALVDYLENGRSQLMAKGHYEDNEHVFLFVNYKGEQLTSQGIAYILDQIVKNS 239

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
              LS   H LRHSFATHLL+NG D+R++Q +LGH  LSTTQIYT+++ +     + + Y
Sbjct: 240 ATTLSIHPHKLRHSFATHLLNNGADIRTVQELLGHASLSTTQIYTHLSKE----KLRDNY 295

Query: 315 DQTHPSITQKDK 326
            Q HP   QK +
Sbjct: 296 LQFHPHAKQKKE 307


>gi|13473085|ref|NP_104652.1| site-specific tyrosine recombinase XerD [Mesorhizobium loti
           MAFF303099]
 gi|34222995|sp|Q98FX8|XERD_RHILO RecName: Full=Tyrosine recombinase xerD
 gi|14023833|dbj|BAB50438.1| site-specific recombinase [Mesorhizobium loti MAFF303099]
          Length = 305

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 85/312 (27%), Positives = 136/312 (43%), Gaps = 20/312 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+ +  ERG ++ TL SY  D       +                     RA++  
Sbjct: 7   IEAFLEMMSAERGAAENTLSSYRRDLEDASSGIDGGLAGAAAADI---------RAYLDD 57

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S  R LS I+ F K+L    + T+     + + KK+  LP+ ++E +   L
Sbjct: 58  IAERGFAPTSQARKLSAIRQFFKFLYAEGLRTDDPTGTLDSPKKARPLPKTMSEAETGRL 117

Query: 138 VDNVLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +D   +           +    R  A++ +LY  GLR+SE + L       D     ++G
Sbjct: 118 IDRAAVEAGDAGLGYSDRLAALRLHALVEVLYATGLRVSELVGLPVTVAQRDDRFFMVRG 177

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLR 251
           KGDK R+VPL    R A+  +               LF        L+  VF R ++ L 
Sbjct: 178 KGDKERMVPLSAKARVAMRAWLAARAGVPAFADSPFLFPAASDSGYLSRQVFARDLKGLA 237

Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              G+     + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V  +     +
Sbjct: 238 ARAGIASAKISPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHVLEER----L 293

Query: 311 MEIYDQTHPSIT 322
           + + +  HP   
Sbjct: 294 VRLVNDHHPLAD 305


>gi|224824183|ref|ZP_03697291.1| tyrosine recombinase XerC [Lutiella nitroferrum 2002]
 gi|224603602|gb|EEG09777.1| tyrosine recombinase XerC [Lutiella nitroferrum 2002]
          Length = 323

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 85/293 (29%), Positives = 140/293 (47%), Gaps = 19/293 (6%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G S  T  +Y  D +                Q    L+  +IR  +++   +    RSL 
Sbjct: 38  GKSPHTRSAYRRDLQALAAL--------QGAQDPATLTAQQIRLAVARLHAKGHIGRSLA 89

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R LS  + F  +L +++    +    +R  K   +LP+AL       L+D  +       
Sbjct: 90  RMLSAWRGFFDWLIEQEKLPANPCHGIRPPKSPKTLPKALPVDATSALLDAPI----DPE 145

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
             +  R+ A+  LLY CGLR+SE   L   ++   +  L   GKG+K RI+P+    R+A
Sbjct: 146 DDLALRDQAMFELLYSCGLRLSELTGLDLADLDLGEGLLTAHGKGNKTRILPIGRQARQA 205

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +  +  + P   +   +  +F G  G+ L+    ++ + Q  +  G       H LRHSF
Sbjct: 206 LERWLAIRP---SQPGEGAVFTGKSGRRLSGRQVEKRLEQWAQRHGSDRHVHPHMLRHSF 262

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           A+HLL + GDLR++Q +LGH  LSTTQIYT+++ ++    + ++YD THP   
Sbjct: 263 ASHLLQSSGDLRAVQELLGHANLSTTQIYTSLDFQH----LAKVYDATHPRAK 311


>gi|313674963|ref|YP_004052959.1| tyrosine recombinase xerd [Marivirga tractuosa DSM 4126]
 gi|312941661|gb|ADR20851.1| tyrosine recombinase XerD [Marivirga tractuosa DSM 4126]
          Length = 299

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 137/304 (45%), Gaps = 15/304 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +   L++ER L++ T+ +Y  D  +   FL              Q+S T++  F+    
Sbjct: 9   EYKNYLQLERSLAENTVAAYVHDVIKLKQFLDISNRN----VDPLQVSSTDLHNFLEYVN 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +   +  R +SGIK F KYL    I  ++    +   K    LP  L+  +   ++ 
Sbjct: 65  ELGMTVHTQARVVSGIKGFYKYLVFEDIIEDNPAELLEAPKLGRKLPDVLSFDEIEQII- 123

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                +   +     R+  +L +LY  GLR++E  SL   N   D   LRI GKG K R+
Sbjct: 124 ----SSIDRSTANGQRDLTMLEVLYSSGLRVTELTSLKISNTYFDLGFLRIIGKGSKERL 179

Query: 200 VPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           VP+  S  K +  Y              +  +F    G  ++       I++     G+ 
Sbjct: 180 VPMGKSAAKQLKIYLTEVRVHQKPKPEARDIVFLNRFGGAISRISVFTMIKKQCVMAGIR 239

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + + HT RHSFATHL+  G DLR++Q +LGH  ++TT+IYT+++     D++ +   + 
Sbjct: 240 KNVSPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLD----RDYLSQTLKEF 295

Query: 318 HPSI 321
           HP  
Sbjct: 296 HPRA 299


>gi|21230129|ref|NP_636046.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769880|ref|YP_244642.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188993095|ref|YP_001905105.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv.
           campestris str. B100]
 gi|34222916|sp|Q8PCQ9|XERD_XANCP RecName: Full=Tyrosine recombinase xerD
 gi|21111659|gb|AAM39970.1| integrase/recombinase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66575212|gb|AAY50622.1| integrase/recombinase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167734855|emb|CAP53066.1| tyrosine recombinase [Xanthomonas campestris pv. campestris]
          Length = 323

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 92/327 (28%), Positives = 153/327 (46%), Gaps = 24/327 (7%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
               LP + + +  +  Q +L  L  E+G+++ TL SY  D      +            
Sbjct: 12  RAQQLPPLRAED-DQAIQRFLDRLWAEQGVARQTLDSYRRDLEGLARWRDGAGG------ 64

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            ++    + +  ++  R   +   RS  R LS ++ F     +  + ++     +   + 
Sbjct: 65  GLQGADRSALFDYLRWRTEARYAPRSNARLLSTLRGFYALCLRDGVRSDDPTALLDPPRL 124

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
             SLP+AL E Q   L     L        +  R+ A+L L+Y  GLR+SE ++L    I
Sbjct: 125 PRSLPKALTESQIDAL-----LAAPEIGTPLGLRDRAMLELMYAAGLRVSELVTLPAVAI 179

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-------LNIQLPLFRGIR 234
              Q  LR+ GKG K R+VPL    +  +  Y +     L+       ++ Q+PLF    
Sbjct: 180 NLRQGVLRVTGKGSKERLVPLGEESQHWLERYLETARPTLSERKAVPAVDGQVPLFIDAA 239

Query: 235 GKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            +PL+   F   +++     G+ P + + H LRHSFATHLL++G DLR++Q +LGH  LS
Sbjct: 240 RRPLSRQQFWGLVKRYAAVAGIDPDTVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLS 299

Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           TTQIYT V  ++    +  ++ + HP 
Sbjct: 300 TTQIYTLVARQH----LQTLHARHHPR 322


>gi|325125940|gb|ADY85270.1| Tyrosine recombinase xerC [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 295

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L+ ER  S  T+ +Y+ D      F     +E        Q+S  ++  ++   
Sbjct: 5   EQFLSYLKNERSYSPKTVLAYQKDLAATKKFW----QENGGFPGWDQISRRDLEIYLLA- 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             QK+   +L R LS +KSF ++L +R +      + ++  +    LP    + +   ++
Sbjct: 60  TGQKLASSTLSRKLSSLKSFYRFLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQVI 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                 + ++ K +  RN AI+ L Y  G+R+SE   L  + +  +   + + GKG+K R
Sbjct: 120 -----RSLNDGKPLTVRNRAIVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDR 174

Query: 199 IVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            V      +K + EY       L  N      +F    G+P++     + ++Q+ +  GL
Sbjct: 175 YVFFDQESKKYLEEYLQAARPSLLKNEPDTGAVFLNKLGRPISSRGIAKAVQQIFQKAGL 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V+ ++        Y Q
Sbjct: 235 TAGAHPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQHLTVE----YRQ 290

Query: 317 THPS 320
             P 
Sbjct: 291 HFPR 294


>gi|170747361|ref|YP_001753621.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
 gi|170653883|gb|ACB22938.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
          Length = 326

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 124/321 (38%), Positives = 177/321 (55%), Gaps = 8/321 (2%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           +G+ L       L      W++ L  ER +S  T+++Y  D RQFL  LA       TI 
Sbjct: 11  QGDRLLFPGDARLRDAVLAWIEALARERRMSSNTVEAYGRDLRQFLHHLASRQG-TPTIP 69

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            +  L   +IR F++ RR  ++  RSL R L+G++SF ++L++    T S +  +R+ K 
Sbjct: 70  MLIGLKVRDIRGFMAARRADEVSGRSLMRMLAGLRSFARFLEREGFGTVSALGGVRSPKV 129

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN- 180
              LPR L    A+ L D  +        W+ AR++A+L LLYG GLRISEAL L+ ++ 
Sbjct: 130 PRRLPRPLPVSAAVALTDTAIRAGEEREPWVLARDAAVLALLYGAGLRISEALGLSRRDA 189

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
            +     + + GKG K R+VP+LP V +A+ +Y   CP  L     L    G RG PL+P
Sbjct: 190 PLPGVDQVTVLGKGGKQRMVPILPVVAQAVADYVAACPLPLPPEGPLF--LGARGGPLSP 247

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            + Q  + + R  LGLP S T H LRHSFATHLL+  G+LR+IQ +LGH  LSTTQ+YT 
Sbjct: 248 RIIQYTVARARGALGLPESATPHALRHSFATHLLARQGELRAIQELLGHASLSTTQLYTQ 307

Query: 301 VNSKNGGDWMMEIYDQTHPSI 321
           V++      +M  Y   HP  
Sbjct: 308 VDAAR----LMSAYAAAHPRA 324


>gi|326572192|gb|EGE22188.1| tyrosine recombinase XerD [Moraxella catarrhalis BC7]
          Length = 307

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 86/324 (26%), Positives = 157/324 (48%), Gaps = 22/324 (6%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLE---IERGLSKLTLQSYECDTRQFLIFLAFYTEEK 57
           M  + +P   S  +  +   +L       + RGLS  T  +Y  D R  +         +
Sbjct: 1   MAKSTIPRADSAVIYDDDPEYLSEFRAAMLARGLSIATRNAYSQDVRLCI---------R 51

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           ++   +     +++R  +   +  K  +RS+ R L+ +  F  +  +     ++   +++
Sbjct: 52  LSDMPVNLWQPSDVRNHLMCLKDAKKSERSIARVLASLCQFFLWQIESGYREDNPCESIK 111

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             K   +LP+ L+E++  +L+D         +     R+ A+L +LY CGLR+SE  SL+
Sbjct: 112 TPKLGKTLPKTLSEQEVSSLLD-----APDISSVRGLRDKAMLEVLYACGLRVSELTSLS 166

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGK 236
            +++      L + GKG+K+R++PL      A+ EY  +    L        +F   +G 
Sbjct: 167 LEHLNLTAGWLSVTGKGNKMRLIPLGEYALSALNEYLAVRGSLLIGKKDCQAVFLTEQGG 226

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            +    F   I++     G+  + + HTLRH+FATHL+++G DLRS+Q +LGH  LSTTQ
Sbjct: 227 YMTRHNFWHLIKKYALMAGINTAISPHTLRHAFATHLVNHGADLRSVQLLLGHSDLSTTQ 286

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPS 320
           IYT+V +      +  ++ + HP 
Sbjct: 287 IYTHVATTR----LQNLHAKHHPR 306


>gi|228473046|ref|ZP_04057803.1| tyrosine recombinase XerD [Capnocytophaga gingivalis ATCC 33624]
 gi|228275628|gb|EEK14405.1| tyrosine recombinase XerD [Capnocytophaga gingivalis ATCC 33624]
          Length = 301

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 95/307 (30%), Positives = 161/307 (52%), Gaps = 16/307 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  +++   L+IERG+S  ++QSY  D  +   ++  +  E+        +S   +R F+
Sbjct: 8   KLLKDFEHYLKIERGMSPNSVQSYLFDLEKLSDYINLHQIEER----PENISAETLREFV 63

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
             ++++++  RS  R +S +KSF KYL       +  +  +   K    LP  L+ ++  
Sbjct: 64  -YQQSKELQARSQSRLISSLKSFFKYLLLENYREDFPMEYIDTPKYGMKLPDTLSVEEID 122

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+  + L TS        RN AI+  LYGCGLR+SE ++L   ++  ++  +R+ GKGD
Sbjct: 123 ALIAGIDLSTSE-----GHRNRAIIETLYGCGLRVSELVNLHLSDLFFEEGFIRVLGKGD 177

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLN--LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R+VP+    +K I  Y      ++         +F   RGK L   +    I+Q    
Sbjct: 178 KQRLVPISEYTQKQINNYIQHQRKEVPQVKEFTDIVFLNRRGKQLTRAMIFTIIKQTAAA 237

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +GL  + + HT RHSFATHLL NG +LR+IQ +LGH  ++TT+IYT+++      ++ ++
Sbjct: 238 IGLTKTISPHTFRHSFATHLLENGANLRAIQLMLGHESITTTEIYTHID----HSYLSQV 293

Query: 314 YDQTHPS 320
            +  HP 
Sbjct: 294 VNTYHPR 300


>gi|315445045|ref|YP_004077924.1| tyrosine recombinase XerC subunit [Mycobacterium sp. Spyr1]
 gi|315263348|gb|ADU00090.1| tyrosine recombinase XerC subunit [Mycobacterium sp. Spyr1]
          Length = 300

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 141/305 (46%), Gaps = 10/305 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + + LE+ERG S+ T ++Y  D R    FL    +E+     +  L+   +R++++ 
Sbjct: 5   LEEFDRYLELERGRSEHTRRAYLGDLRSLFAFL----DERSPGTGLGGLTLPMLRSWLAA 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    +L R  S +K+F  +  +R +  +     ++  K   +LP  L + QA   
Sbjct: 61  HAAADTARSTLARRTSSVKTFTAWAVRRGLIGDDPASRLQVPKARRTLPSVLRQDQARDA 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++        +   +  R+  ++ +LY  G+R+SE   L   ++   +  LR+ GKG+K 
Sbjct: 121 LEAAESGA-QQGDPLAVRDRLVVEMLYATGIRVSELCGLDVDDVDTSRRLLRVLGKGNKQ 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R VP       A+  +       L      P L  G RGK L+P   +  + Q    +G 
Sbjct: 180 RTVPYGEPAHAALTAWLHEGRPALATADSGPALLLGARGKRLDPRQARTVVHQTVSAVGG 239

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V        +  ++DQ
Sbjct: 240 APDIGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVTVAR----LRAVHDQ 295

Query: 317 THPSI 321
            HP  
Sbjct: 296 AHPRA 300


>gi|145224715|ref|YP_001135393.1| site-specific tyrosine recombinase XerC [Mycobacterium gilvum
           PYR-GCK]
 gi|189030078|sp|A4TEB1|XERC_MYCGI RecName: Full=Tyrosine recombinase xerC
 gi|145217201|gb|ABP46605.1| tyrosine recombinase XerC subunit [Mycobacterium gilvum PYR-GCK]
          Length = 300

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 141/305 (46%), Gaps = 10/305 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + + LE+ERG S+ T ++Y  D R    FL    +E+     +  L+   +R++++ 
Sbjct: 5   LEEFDRYLELERGRSEHTRRAYLGDLRSLFAFL----DERSPGTGLGGLTLPMLRSWLAA 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    +L R  S +K+F  +  +R +  +     ++  K   +LP  L + QA   
Sbjct: 61  HAAAGTARSTLARRTSSVKTFTAWAVRRGLIGDDPASRLQVPKARRTLPSVLRQDQARDA 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++        +   +  R+  ++ +LY  G+R+SE   L   ++   +  LR+ GKG+K 
Sbjct: 121 LEAAESGA-QQGDPLAVRDRLVVEMLYATGIRVSELCGLDVDDVDTSRRLLRVLGKGNKQ 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R VP       A+  +       L      P L  G RGK L+P   +  + Q    +G 
Sbjct: 180 RTVPYGEPAHAALTAWLHEGRPALATADSGPALLLGARGKRLDPRQARTVVHQTVSAVGG 239

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V        +  ++DQ
Sbjct: 240 APDIGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVTVAR----LRAVHDQ 295

Query: 317 THPSI 321
            HP  
Sbjct: 296 AHPRA 300


>gi|227833388|ref|YP_002835095.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975]
 gi|227454404|gb|ACP33157.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975]
          Length = 303

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 77/309 (24%), Positives = 140/309 (45%), Gaps = 20/309 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L +  +++ +   I RG S+ T++ Y  D R               +      +   +R
Sbjct: 15  QLEEAIEDFAEYQRIVRGRSEATVRGYCSDLRLLA----------PEVPEFAAFTLNSLR 64

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            +++    +     +L R  + +++F  +  +           +   K    LP  ++  
Sbjct: 65  EWLAHAVAEGKSRSTLARRTAAVRAFSTWAAREGYLESDVAQRLATPKVGKHLPTVMSPT 124

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
            A  L+ N         +    R+SA+L  LY  G+R++E + L   +I   + T R+ G
Sbjct: 125 AAGELMGN----AVSTDEVHFLRDSAMLEFLYATGVRVAELVGLDVGDIDLSRRTARVTG 180

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG+K R+VP   +   A+  +      +L    +  +F G RG  ++    +R + +  +
Sbjct: 181 KGNKQRVVPFGDAAHDALCAWLKTGRPELAGETE-AVFVGTRGGRIDARQVRRVVERAAQ 239

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G P   T H LRHS ATHLL  G DLR +Q +LGH  L TTQ+YT+V+++     + +
Sbjct: 240 VTGAP-GLTPHGLRHSAATHLLEGGADLRIVQELLGHSSLQTTQVYTHVSAQR----LKD 294

Query: 313 IYDQTHPSI 321
           +Y ++HP  
Sbjct: 295 VYARSHPRA 303


>gi|184201180|ref|YP_001855387.1| tyrosine recombinase XerD [Kocuria rhizophila DC2201]
 gi|183581410|dbj|BAG29881.1| tyrosine recombinase XerD [Kocuria rhizophila DC2201]
          Length = 304

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 86/314 (27%), Positives = 139/314 (44%), Gaps = 23/314 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L +L +ERGL+  T+ +Y  D  ++L  L         ++  R ++   +RAF+ + R
Sbjct: 3   RYLDHLVVERGLAANTVSAYRRDLARYLQHLTATAAH---VRVPRDITADHVRAFVRRIR 59

Query: 80  TQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
                   +  RS  R L+ ++    +              +        LP+A+   + 
Sbjct: 60  EGDAAHPALSARSSARVLAAVRGAHAFWVTESSVDTDVASRVSPPMPPQRLPKAIGVTEV 119

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRI 190
             L+                R  A L LLY  G RISEA++L   +      +D + +R+
Sbjct: 120 ENLL-----AAPDPDTPAGLRARAFLELLYATGARISEAVALDVDDLAGLHDEDLALIRV 174

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIR 248
            GKG K R+VP+      A+  Y      +L  + +    +F   RG  ++       ++
Sbjct: 175 TGKGAKQRLVPVGSFAVAALDRYLIRARPELARHGRGSPAVFLNARGTRISRQTAWNMVK 234

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
              R +      T HTLRHSFATHLL  G DLR +Q +LGH  L+TTQIYT V+ ++   
Sbjct: 235 DAARTIHQEERITPHTLRHSFATHLLEGGADLRVVQELLGHASLATTQIYTRVSVES--- 291

Query: 309 WMMEIYDQTHPSIT 322
            + E+Y  +HP   
Sbjct: 292 -LREVYATSHPRAR 304


>gi|148651956|ref|YP_001279049.1| tyrosine recombinase XerD [Psychrobacter sp. PRwf-1]
 gi|148571040|gb|ABQ93099.1| tyrosine recombinase XerD [Psychrobacter sp. PRwf-1]
          Length = 312

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 84/318 (26%), Positives = 153/318 (48%), Gaps = 22/318 (6%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P+ ++ +         +   + RGLS  T  +Y  D +           E    + +   
Sbjct: 12  PKALAVDDEPAYITEFRQAMLARGLSTRTRNAYVRDLKLC---------ETTHSKALTLW 62

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           S  ++   ++    Q    R+  R LS ++ F  ++   +   ++    ++  K   SLP
Sbjct: 63  SDMDVMQCLTALDRQGKTPRTQARMLSSLRQFYLWMVGNERREDNPCERIKTPKIGRSLP 122

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L+E    +L+          +  +  R+ A+L +LY CGLR+SE ++L+ + +  +  
Sbjct: 123 KDLSENDVESLL-----SAPDTSTALGLRDKAMLEVLYACGLRVSELMNLSLEQVNLNAG 177

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL----PLFRGIRGKPLNPGV 242
            L+I GKG+K R+VPL      A+ +Y      +L  +++      +F   +G  +    
Sbjct: 178 WLQITGKGNKTRLVPLGEYASDALDDYLTHARGELVAHLKSGNCQAVFLTTQGGYMTRQN 237

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           F   I++  +  G+    + HTLRH+FATHLL++G DLRS+Q +LGH  LSTTQIYT+V 
Sbjct: 238 FWYMIKKYAKQAGIQSDLSPHTLRHAFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHVA 297

Query: 303 SKNGGDWMMEIYDQTHPS 320
           +      + ++++  HP 
Sbjct: 298 TAR----LQQLHEAHHPR 311


>gi|107023497|ref|YP_621824.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia
           AU 1054]
 gi|116690579|ref|YP_836202.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia
           HI2424]
 gi|170733919|ref|YP_001765866.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia
           MC0-3]
 gi|105893686|gb|ABF76851.1| Tyrosine recombinase XerD [Burkholderia cenocepacia AU 1054]
 gi|116648668|gb|ABK09309.1| tyrosine recombinase XerD [Burkholderia cenocepacia HI2424]
 gi|169817161|gb|ACA91744.1| tyrosine recombinase XerD [Burkholderia cenocepacia MC0-3]
          Length = 318

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 87/316 (27%), Positives = 139/316 (43%), Gaps = 20/316 (6%)

Query: 9   IVSFELLKERQN---WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
             S  LL  R +   +   L +E GL++ TL +Y  D   F  +LA   +       +  
Sbjct: 18  AASPALLASRASIDVFCDALWLEHGLARNTLDAYRRDLALFSQWLAATHD-----APLDS 72

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
                +  +I+ R   K    S  R LS  + +  +  +    +    L + + K+    
Sbjct: 73  ADEAMVTGYIAARSDGK--ATSSNRRLSVFRRYYGWAVREHRASADPTLRITSAKQGARF 130

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P  L+E Q   L+             +  R+  +L L+Y  GLR+SE ++L    +  ++
Sbjct: 131 PSTLSEAQVEALL-----GAPDIGTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNE 185

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
             +R+ GKG K R+VP        I  Y     P  L       LF   RG  +    F 
Sbjct: 186 GVVRVMGKGSKERLVPFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFW 245

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             I++  +   +    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +
Sbjct: 246 NIIKRHAQQADVRAHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARE 305

Query: 305 NGGDWMMEIYDQTHPS 320
                +  ++ Q HP 
Sbjct: 306 R----LRTLHAQHHPR 317


>gi|171463113|ref|YP_001797226.1| tyrosine recombinase XerD [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171192651|gb|ACB43612.1| tyrosine recombinase XerD [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 307

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 81/315 (25%), Positives = 146/315 (46%), Gaps = 19/315 (6%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
            ++    +  + +     +E GL++ +L +Y  D      +L      K +   +  ++ 
Sbjct: 7   AIAPASQEAIERFCDACWLEDGLAQNSLAAYRRDLLLLAQWLY-----KDSGGDLYGVTE 61

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++ A+I+ RR  K    +  R L+  K F ++  +  +      + +R  K++   P+ 
Sbjct: 62  KDLTAYIAYRRADK--ATTANRRLTVFKRFYRHALRMNLVKSDPCMGLRAAKQALRFPKT 119

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+E Q   L+     +       +  R+  +L L+Y  GLR+SE +SL    +  ++  +
Sbjct: 120 LSEDQVTALL-----NAPDIETSLGLRDRTMLELMYASGLRVSEIVSLKTAALGLNEGVV 174

Query: 189 RI-QGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQR 245
           R+  GKG K R+VP      + +  Y  +     L       +F G      L    F  
Sbjct: 175 RVVNGKGGKERLVPFGGEAGQWLRRYLAEARTPLLEGKTSDAVFVGRHTGTGLTRQAFWA 234

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            I++      + ++ + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  + 
Sbjct: 235 LIKRYATVANISVALSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER 294

Query: 306 GGDWMMEIYDQTHPS 320
               +  I+ Q HP 
Sbjct: 295 ----LKSIHQQHHPR 305


>gi|289663723|ref|ZP_06485304.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289668605|ref|ZP_06489680.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 323

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 89/326 (27%), Positives = 147/326 (45%), Gaps = 24/326 (7%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
              LP + + +     + +L     E+G+++ TL+SY  D      +             
Sbjct: 13  AQQLPPLQAAD-AGVIERFLDRFWAEQGVARQTLESYRRDLEGLARW------RAGAGGG 65

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +  +    +  ++  R       RS  R LS +++F     +  + ++     +   +  
Sbjct: 66  LLGIDRAALFDYLRLRAKANYSPRSTARLLSTLRAFYGLCLRDGMRSDDPTALIDPPQLP 125

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            SLP+AL E Q   L+                R+ A+L L+Y  GLR+SE ++L    + 
Sbjct: 126 RSLPKALTESQIEALL-----AAPEVDTPAGLRDRAMLELMYAAGLRVSELVNLPAVGVN 180

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-------QLPLFRGIRG 235
             Q  LR+ GKG K R+VPL    +  +  Y       L  N        Q+PLF     
Sbjct: 181 LRQGVLRVTGKGSKDRLVPLGEESQHWLERYLRGARPLLAANKPVAAVDGQVPLFIDAAR 240

Query: 236 KPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           +PL+   F   +++     G+ P + + H LRHSFATHLL++G DLR++Q +LGH  LST
Sbjct: 241 QPLSRQQFWALVKRYAAVAGIDPATVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLST 300

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPS 320
           TQIYT V  ++    + +++   HP 
Sbjct: 301 TQIYTLVARQH----LQKLHASHHPR 322


>gi|206561110|ref|YP_002231875.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia
           J2315]
 gi|198037152|emb|CAR53073.1| putative integrase/recombinase [Burkholderia cenocepacia J2315]
          Length = 316

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 88/323 (27%), Positives = 142/323 (43%), Gaps = 20/323 (6%)

Query: 2   EGNNLPEIVSFELLKERQN---WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI 58
           E ++     S  LL  R +   +   L +E GL++ TL +Y  D   F  +LA       
Sbjct: 9   EADDDAVAASPALLASRASIDVFCDALWLEHGLARNTLDAYRRDLVLFSQWLAATH---- 64

Query: 59  TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
               +       +  +I+ R   K    S  R LS  + +  +  +    +    L + +
Sbjct: 65  -AAPLDGADEAMVTGYIAARSDGK--ATSSNRRLSVFRRYYGWAVREHRASADPTLRITS 121

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            K++   P  L+E Q   L+             +  R+  +L L+Y  GLR+SE ++L  
Sbjct: 122 AKQAARFPSTLSEAQVEALL-----GAPDIGTPLGLRDRTMLELMYASGLRVSELVTLKT 176

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKP 237
             +  ++  +R+ GKG K R+VP        I  Y     P  L       LF   RG  
Sbjct: 177 VEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERYLRDARPALLGARAADALFVTARGDG 236

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    F   I++  +   +    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQI
Sbjct: 237 MTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQI 296

Query: 298 YTNVNSKNGGDWMMEIYDQTHPS 320
           YT+V  +     +  ++ Q HP 
Sbjct: 297 YTHVARER----LKTLHAQHHPR 315


>gi|56459934|ref|YP_155215.1| site-specific recombinase [Idiomarina loihiensis L2TR]
 gi|56178944|gb|AAV81666.1| Site-specific recombinase [Idiomarina loihiensis L2TR]
          Length = 300

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 84/311 (27%), Positives = 143/311 (45%), Gaps = 15/311 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +  E       + ++L +  G S  T  +Y  D R++  +L          +++      
Sbjct: 4   LRPEDEDRIDAFTEHLWLHHGSSNNTQAAYRSDLRRYCEYLLSLK------KSLMDTDEV 57

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            ++ ++  RR Q +  RS  R LS  K F ++  K++         ++  K   S+P +L
Sbjct: 58  VLQDYLLWRRMQGLSPRSTSRFLSSTKKFFQFAVKQQWVAVDPTARLKRPKLPQSIPHSL 117

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +E+  ++L++            I  R+  +L +LY  GLR++E + L    +   Q  +R
Sbjct: 118 SEEDVISLLEQ-----PDTETPIGLRDRTMLEVLYATGLRVTELIRLQYDQLSRQQGLVR 172

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG+K R+VPL     + +  Y       +       +F   RG  L    F   ++ 
Sbjct: 173 VIGKGNKERLVPLGEDALEWLDNYLKHGRPAITDKSSPWIFVTQRGSLLTRQAFWYRLKH 232

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT V  +     
Sbjct: 233 YAEEAGIYAHLSPHTLRHAFATHLLNHGADLRVLQLLLGHSDLSTTQIYTQVARER---- 288

Query: 310 MMEIYDQTHPS 320
           +  ++ Q HP 
Sbjct: 289 LQALHAQHHPR 299


>gi|239826606|ref|YP_002949230.1| site-specific tyrosine recombinase XerC [Geobacillus sp. WCH70]
 gi|239806899|gb|ACS23964.1| tyrosine recombinase XerC [Geobacillus sp. WCH70]
          Length = 300

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 97/304 (31%), Positives = 158/304 (51%), Gaps = 17/304 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +++ L++E+  S+ T+  Y+ D  QF  F+      +  I  + +++Y ++R +++K   
Sbjct: 11  FIEYLQVEKNYSQYTIVCYQRDVEQFFEFM-----NEQGIHHLHEVTYNDVRLYLTKLYE 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           QK   RS+ R +S ++SF K+L + K   E+        KK   +P  L E++   L   
Sbjct: 66  QKQSSRSISRKISSLRSFYKFLLREKKVKENPFALAALPKKEQKIPNFLYEQELEKLFYV 125

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             ++T+     I  RN AIL LLY  G+R+SE   +   +I    ST+ I GKG+K R V
Sbjct: 126 NDVNTA-----IGQRNQAILELLYATGVRVSECCHIQLSDIDFSVSTILIHGKGNKQRYV 180

Query: 201 PLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           P     ++A+  Y      +L     +    LF   RG PL P   +  + ++ +   L 
Sbjct: 181 PFGRFAKEALERYIHHGRRELLQKAKSAHAYLFVNARGNPLTPRGVRYILDEIVKKAALT 240

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + + H LRH+FATHLL+ G D+R++Q +LGH  LS+TQ+YT+V      D +  IY  T
Sbjct: 241 QNISPHVLRHTFATHLLNEGADMRTVQELLGHAHLSSTQVYTHVT----KDRLRHIYLHT 296

Query: 318 HPSI 321
           HP  
Sbjct: 297 HPRA 300


>gi|119899508|ref|YP_934721.1| integrase/recombinase [Azoarcus sp. BH72]
 gi|119671921|emb|CAL95835.1| integrase/recombinase [Azoarcus sp. BH72]
          Length = 305

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 87/315 (27%), Positives = 149/315 (47%), Gaps = 18/315 (5%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           + +S E   E   +   L +E GL+  T+  Y  D  QF  +LA    + I      +  
Sbjct: 6   QQLSAETRAELDLFCDALWLEFGLAANTIAGYRSDLAQFGAWLASRGTQLI------EAD 59

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
            +++ A++++  +++    S +R +S  + F + L  ++   +   + +         PR
Sbjct: 60  ESQLTAYLAEF-SRRAKPASQRRLMSAWRRFYRGLLGQRRIAQDPTVQLDAPVTGERFPR 118

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L+E Q  +L+                R+ ++L LLY  GLR+SE + L    I   +  
Sbjct: 119 TLSEAQVESLL-----AAPDVDTIHGLRDRSMLELLYASGLRVSELVELKLFAISTGEGV 173

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           +R+ GKG K R+VP      + +  Y     P  L       +F   RG  +   +F R 
Sbjct: 174 IRVFGKGSKERLVPTGDIALEWLGRYLREARPALLRGRTCDEVFVSQRGAGMTRQMFWRI 233

Query: 247 IRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           I+Q     G+P    + HTLRH+FATHL+++G DLR +Q +LGH  +STTQIYT+V  + 
Sbjct: 234 IKQYAPKAGIPAQRISPHTLRHAFATHLINHGADLRVVQLLLGHADISTTQIYTHVARER 293

Query: 306 GGDWMMEIYDQTHPS 320
               + +++ + HP 
Sbjct: 294 ----LKQLHARHHPR 304


>gi|217964580|ref|YP_002350258.1| tyrosine recombinase XerC [Listeria monocytogenes HCC23]
 gi|254799346|sp|B8DG54|XERC_LISMH RecName: Full=Tyrosine recombinase xerC
 gi|217333850|gb|ACK39644.1| tyrosine recombinase XerC [Listeria monocytogenes HCC23]
 gi|307570856|emb|CAR84035.1| tyrosine integrase/recombinase [Listeria monocytogenes L99]
          Length = 300

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 81/308 (26%), Positives = 144/308 (46%), Gaps = 15/308 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q +L  L  ER  S  T  +YE D   F  FL      +  I+T +Q+++ ++R ++
Sbjct: 6   KLEQQFLDYLHSERNYSVNTSTAYENDLLDFRRFL-----NEQAIETYQQVTFLDVRIYL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++ + +     ++ R +S ++SF  +L +  +  E+    + + K    LP+    ++  
Sbjct: 61  TELKQKSFSRTTVARKISSLRSFYTFLLRENVIAENPFTYVSHAKNQLRLPKFFYSEEME 120

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L   V      + + +  R+  +L +LYG G+R+SE   +   ++      + I+GKG+
Sbjct: 121 ALFQVVY----EDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGN 176

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R VP       AI +Y       +         L     G PL     +  + ++   
Sbjct: 177 KERYVPFGVYAEDAITDYLPKRTELMTRYKKSHDALLVNHYGDPLTTRGIRYCLTKIISK 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRH+FAT LL+NG D+R++Q +LGH  L++TQIYT+V  ++    +   
Sbjct: 237 ASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLASTQIYTHVTKEH----LKST 292

Query: 314 YDQTHPSI 321
           Y + HP  
Sbjct: 293 YMKHHPRA 300


>gi|113866617|ref|YP_725106.1| site-specific tyrosine recombinase XerD [Ralstonia eutropha H16]
 gi|113525393|emb|CAJ91738.1| Site-specific recombinase XerD [Ralstonia eutropha H16]
          Length = 312

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 137/303 (45%), Gaps = 17/303 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +   L +E GLS+ T+ +Y  D      +L      ++       LS     A+ + R 
Sbjct: 24  RFCDALWLEDGLSRNTIDAYRRDLTLLARWLQHEHRGELPGADDGALS-----AYFNARH 78

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           TQ     S  R L+  + F ++  +  +      L +R  K+    P+ L E Q   L++
Sbjct: 79  TQSRA-SSANRRLAVFRRFYQWALREHLVEADPCLLLRPAKQPPRYPKTLTESQVDALLE 137

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIR 198
                       +  R+  +L L+Y  GLR+SE   +    I  ++   R+ G KGDK R
Sbjct: 138 -----APDTDTPLGLRDRTMLELMYASGLRVSELTQMKTIEIGLNEGVARVVGGKGDKER 192

Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP        +  Y     P  L       LF   RG+ +    F   I++  R  G+ 
Sbjct: 193 LVPFGQQAGDWLRRYLASARPALLAGRACDALFVTQRGEGMTRQAFWHLIKRHARDAGVH 252

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     + E++ Q 
Sbjct: 253 APLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER----LRELHQQH 308

Query: 318 HPS 320
           HP 
Sbjct: 309 HPR 311


>gi|145588480|ref|YP_001155077.1| tyrosine recombinase XerD [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145046886|gb|ABP33513.1| tyrosine recombinase XerD subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 305

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 82/308 (26%), Positives = 144/308 (46%), Gaps = 19/308 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + +     +E GL+K +L +Y  D      +L   +        +  ++  ++ A+I
Sbjct: 13  EAIERFCDACWLEDGLAKNSLSAYRRDLLLLAQWLYQQSG-----VDLYAVTEKDLTAYI 67

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           + RR  K    +  R L+  K F ++  +  +      + +R  K++   P+ L+E Q  
Sbjct: 68  AHRRADK--ATTANRRLTVFKRFYRHALRINLVKSDPCIGLRAAKQALRFPKTLSEDQVT 125

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKG 194
            L+     +       +  R+  +L L+Y  GLR+SE +SL    +  ++  +R+  GKG
Sbjct: 126 ALL-----NAPDIETPLGLRDRTMLELMYASGLRVSEIVSLKTVALGLNEGVVRVVNGKG 180

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRR 252
            K R+VP      + +  Y  +     L       +F G      L    F   I++   
Sbjct: 181 GKERLVPFGGEAGQWLRRYLAEARTPLLEGKTTDAVFVGRHTGTGLTRQAFWALIKRYAT 240

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +P++ + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  
Sbjct: 241 VANIPVALSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER----LKS 296

Query: 313 IYDQTHPS 320
           I+ Q HP 
Sbjct: 297 IHQQHHPR 304


>gi|264677254|ref|YP_003277160.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2]
 gi|262207766|gb|ACY31864.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2]
          Length = 318

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 77/305 (25%), Positives = 138/305 (45%), Gaps = 15/305 (4%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
               ++  L +E GLS+ TL +Y  D      +LA         + +      +++ + +
Sbjct: 27  ALDQFIDALLLEDGLSRNTLSAYRRDLTATARWLARLQP----PKALDAALEGDLQGYFT 82

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             R +     S  R L+ ++ +  +  + K       + M   K+   +P+ L ++Q   
Sbjct: 83  A-RVEGTKATSSNRRLTVLRRYFHWALREKRIAADPTVRMLAAKQPPRMPKTLTQEQVEA 141

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+D            +  R+ A+L L+Y  GLR+SE + +    +      LR+ GKG K
Sbjct: 142 LLD-----APDVDSPLGLRDRAMLELMYASGLRVSELVGVCMHELDLRSGVLRVTGKGRK 196

Query: 197 IRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R+VP     +  +  Y        L       +F   RG  ++  +F   +++  +  G
Sbjct: 197 ERLVPFGQEAQHWLERYLQQARAVILGGQQTEEVFVTQRGAGMSRVMFWVIVKKCAQIAG 256

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + HTLRH+FATHLL++G DLR +Q +LGH  +STT IYT+V  +     +  ++ 
Sbjct: 257 VNSPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHVARER----LKALHA 312

Query: 316 QTHPS 320
           + HP 
Sbjct: 313 EHHPR 317


>gi|189425748|ref|YP_001952925.1| tyrosine recombinase XerD [Geobacter lovleyi SZ]
 gi|189422007|gb|ACD96405.1| tyrosine recombinase XerD [Geobacter lovleyi SZ]
          Length = 295

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 92/301 (30%), Positives = 152/301 (50%), Gaps = 15/301 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +E+GLS  T  +Y  D  ++L +L     E++   T   +  ++I  F+ K R 
Sbjct: 8   FLAWLTVEKGLSANTRSAYAADLGRYLDYL-----ERLQRDTPDSIQPSDIAEFLGKERE 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  RS  R LS I+   ++L   +    +    +   +    LP  L+  +   L   
Sbjct: 63  RGLAPRSRARLLSAIRMLHRFLLIERYAVTNPSAIIEAPRPLKKLPTFLSMAEVDRL--- 119

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L  +H ++  D R+ A+L LLY  GLR+SE ++L  + +  +   L   GKG+K R++
Sbjct: 120 --LGATHGSRSEDIRDRAMLELLYATGLRVSELVNLKQREVNLEIGYLMTIGKGNKERLI 177

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+  +    + +Y +      +     P LF    G+ +    F   I++     G+  S
Sbjct: 178 PIGAAACHRVADYLEQVRSKQDPEGLQPQLFLSRLGEAMTRQAFWNIIKKRALLAGVRTS 237

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRHSFATHLL+NG DLRS+Q +LGH  LSTTQIYT+V  +     + +++ + HP
Sbjct: 238 ISPHTLRHSFATHLLANGADLRSVQIMLGHADLSTTQIYTHVTRER----LKQLHRELHP 293

Query: 320 S 320
            
Sbjct: 294 R 294


>gi|28493419|ref|NP_787580.1| integrase/recombinase [Tropheryma whipplei str. Twist]
 gi|28476460|gb|AAO44549.1| integrase/recombinase [Tropheryma whipplei str. Twist]
          Length = 316

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 101/304 (33%), Positives = 162/304 (53%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + ++  LE  RG S  T ++Y  D   F  ++  +   +  ++++R +S  ++R+++  
Sbjct: 26  IREFIIYLENVRGYSSHTCRAYYRDLMCFGEYIITHDSRE-NVKSLRDVSIQDLRSWLYS 84

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +  +    RS++R++S +KSF ++   RKIT ++    +R  K ++ LP  L+EK+   +
Sbjct: 85  QSHK--SARSIRRAVSSLKSFFRWAYDRKITAQNTAAALRAPKSTSQLPSVLSEKRIAQI 142

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           + N     SH    I  RN+AI  LLY   +R+SE +SL   +I  D  T+R+ GK  K 
Sbjct: 143 LGNF----SHTVPVIQLRNTAIFELLYASAIRVSELVSLDLDSIDHDLCTVRVDGKNGKQ 198

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+V        A+  Y ++    L+      LF G RG+ +NP V  R + +L       
Sbjct: 199 RVVLFGKPASHALDLYLNMRHTLLSDRSSKALFLGSRGRRINPRVVYRLVSELLEM--PK 256

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRHS ATH+L NG DLRS+Q ILGH  LSTTQIYT+V+ +     ++  Y+Q 
Sbjct: 257 GPRGPHVLRHSAATHMLDNGADLRSLQEILGHSSLSTTQIYTHVSLER----LISSYNQA 312

Query: 318 HPSI 321
           HP  
Sbjct: 313 HPRA 316


>gi|16803317|ref|NP_464802.1| hypothetical protein lmo1277 [Listeria monocytogenes EGD-e]
 gi|224499052|ref|ZP_03667401.1| hypothetical protein LmonF1_04845 [Listeria monocytogenes Finland
           1988]
 gi|224501778|ref|ZP_03670085.1| hypothetical protein LmonFR_04567 [Listeria monocytogenes FSL
           R2-561]
 gi|254829966|ref|ZP_05234621.1| hypothetical protein Lmon1_01355 [Listeria monocytogenes 10403S]
 gi|255016911|ref|ZP_05289037.1| hypothetical protein LmonF_02001 [Listeria monocytogenes FSL
           F2-515]
 gi|284801662|ref|YP_003413527.1| hypothetical protein LM5578_1415 [Listeria monocytogenes 08-5578]
 gi|284994804|ref|YP_003416572.1| hypothetical protein LM5923_1368 [Listeria monocytogenes 08-5923]
 gi|34222941|sp|Q8Y7K0|XERC_LISMO RecName: Full=Tyrosine recombinase xerC
 gi|16410693|emb|CAC99355.1| codV [Listeria monocytogenes EGD-e]
 gi|284057224|gb|ADB68165.1| hypothetical protein LM5578_1415 [Listeria monocytogenes 08-5578]
 gi|284060271|gb|ADB71210.1| hypothetical protein LM5923_1368 [Listeria monocytogenes 08-5923]
          Length = 300

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 81/308 (26%), Positives = 143/308 (46%), Gaps = 15/308 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q +   L  ER  S  T  +YE D   F  FL      +  I T +Q+++ ++R ++
Sbjct: 6   KLEQQFFDYLHSERNYSVNTSTAYENDLLDFRRFL-----NEQAITTYQQVTFLDVRIYL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++ + +     ++ R +S ++SF  +L +  +  E+    + + K    LP+    ++  
Sbjct: 61  TELKQKSFSRTTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEME 120

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L   V      + + +  R+  +L +LYG G+R+SE   +   ++      + I+GKG+
Sbjct: 121 ALFQVVY----EDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGN 176

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R VP       AI +Y       ++        L     G PL     +  + ++   
Sbjct: 177 KERYVPFGAYAEDAITDYLPERVNLMSRYKKSHDALLVNHYGDPLTTRGIRYCLTKIISK 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRH+FAT LL+NG D+R++Q +LGH  LS+TQIYT+V  ++    +   
Sbjct: 237 ASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----LKST 292

Query: 314 YDQTHPSI 321
           Y + HP  
Sbjct: 293 YMKHHPRA 300


>gi|169632680|ref|YP_001706416.1| site-specific tyrosine recombinase [Acinetobacter baumannii SDF]
 gi|169151472|emb|CAP00223.1| site-specific tyrosine recombinase [Acinetobacter baumannii]
          Length = 308

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 90/306 (29%), Positives = 167/306 (54%), Gaps = 14/306 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+  +I+   S+ T+ +YE D R FL F       ++    +R +  +++R ++++R  
Sbjct: 15  WLKERKIQNQ-SEHTITAYERDVRSFLEFC------ELKKVDLRNVEASDLREYLAQRVE 67

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           Q ++   S++R L+ I+ F+K+ ++ K    +   + +  ++   LP  ++ +    ++D
Sbjct: 68  QDQLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILD 127

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             +     + + +  R+ A+L LLY  GLR++E   LT ++I  ++  +RI GKG+K RI
Sbjct: 128 QPMPEKPVDQQ-LWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRI 186

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP     ++++L +  +         Q   +F   RG  L P   ++ ++   +  G+ +
Sbjct: 187 VPFGKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNV 246

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRH FA+H+LS+ GDLRS+Q +LGH  LSTTQIYT+++     D + ++YDQ H
Sbjct: 247 DLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHLAQVYDQAH 302

Query: 319 PSITQK 324
           P  T+ 
Sbjct: 303 PRATKH 308


>gi|21674453|ref|NP_662518.1| phage/XerD family site-specific recombinase [Chlorobium tepidum
           TLS]
 gi|34222894|sp|Q8KBZ5|XERC_CHLTE RecName: Full=Tyrosine recombinase xerC
 gi|21647640|gb|AAM72860.1| site-specific recombinase, phage/XerD family [Chlorobium tepidum
           TLS]
          Length = 336

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 87/319 (27%), Positives = 148/319 (46%), Gaps = 21/319 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY-TEEKITIQTIRQLSYTEIRAFISKR 78
            +L +LE  R +S  T+ +Y  D  QF  FL      ++++      +   ++R F+   
Sbjct: 22  EFLVHLESTRNVSAKTVTAYTTDLIQFFEFLTDESGHQEMSAVDPELVEVADVRRFMGDL 81

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               I  RS+ R L+ +KSF ++L        S +  +   +    +P  L+E++A  L 
Sbjct: 82  LDSGIKPRSIARKLASVKSFYRFLLDTGKIERSPLSLVLTPRLERKIPDFLSEEEASRLF 141

Query: 139 DNVLL-----------HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           D ++L             +   ++  AR+ A+L LLYGCGLR+SE   L   ++      
Sbjct: 142 DQLVLSDQESVGPEQGQKAAVQRFELARDRAVLELLYGCGLRLSEVTGLENADVDLVHGF 201

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           L++ GKG K RIVP      +A+  Y+                   +F   +G+ + P +
Sbjct: 202 LKVTGKGRKQRIVPFGEPAAEALRNYFEVRRNFFRILKEGAGETSKVFVTAKGRQIYPML 261

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            QR  ++    +        H LRH+FATH+L+ G DL+S+  +LGH  L+TT++YT+V 
Sbjct: 262 VQRMTKRYLSPVTESARKNPHMLRHTFATHMLNGGADLKSVSEMLGHSNLTTTELYTHVT 321

Query: 303 SKNGGDWMMEIYDQTHPSI 321
                  + + Y + HP  
Sbjct: 322 FNR----LRDAYTKAHPRA 336


>gi|212695398|ref|ZP_03303526.1| hypothetical protein BACDOR_04947 [Bacteroides dorei DSM 17855]
 gi|212662033|gb|EEB22607.1| hypothetical protein BACDOR_04947 [Bacteroides dorei DSM 17855]
          Length = 308

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 89/309 (28%), Positives = 145/309 (46%), Gaps = 16/309 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            + Q L++E+ LS  T+ +Y  D  + L +L     E I I  +R      +  F +   
Sbjct: 13  KYKQYLKLEKSLSDNTVDAYLTDLDKLLAYLTL---ENINILDVR---LENLEDFSAGLH 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              I  RS  R LSGI+SF ++L             + + +    LP  +  ++   L+ 
Sbjct: 67  DIGIHPRSQARILSGIRSFYRFLIMEDYLESDPTELLESPQTGFKLPEVMTVEEIDLLI- 125

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                +         RN AIL  LY CGLR+SE  +L    +  ++  ++++GKG K R+
Sbjct: 126 ----GSIDRGTKEGQRNRAILETLYSCGLRVSELCNLKLSELYFEEGFIKVEGKGSKQRL 181

Query: 200 VPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+ P   K I  Y+       +    +  +F    GK ++  +    I++L   +GL  
Sbjct: 182 VPISPRAIKEIRLYFTDRNLMKIKPGFEDFVFISNFGKNISRIMVFHIIKELAERIGLKK 241

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HT RHSFATHLL  G +LR+IQ +LGH  + TT+IYT+++       ++E     H
Sbjct: 242 KISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHIDRNMLRSEIIE----HH 297

Query: 319 PSITQKDKK 327
           P   +  +K
Sbjct: 298 PRNIKFREK 306


>gi|254258575|ref|ZP_04949629.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1710a]
 gi|254217264|gb|EET06648.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1710a]
          Length = 333

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 83/301 (27%), Positives = 137/301 (45%), Gaps = 17/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   + +E GLS+ TL +Y  D + F  +LA        + ++   S   +  +I+ R  
Sbjct: 48  FCDAMWLEHGLSRNTLDAYRRDLQLFAQWLAARH-----VASVDHASEPTLTEYIAARSD 102

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            K    S  R LS  + +  +  +         L + + K++   P  L+E Q   L+  
Sbjct: 103 GK--ATSSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALL-- 158

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                      +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+V
Sbjct: 159 ---AAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLV 215

Query: 201 PLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P        I  Y     P  L       LF   RG  +    F   I++  +   + + 
Sbjct: 216 PFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVH 275

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++   HP
Sbjct: 276 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LKTLHAAHHP 331

Query: 320 S 320
            
Sbjct: 332 R 332


>gi|134296744|ref|YP_001120479.1| site-specific tyrosine recombinase XerD [Burkholderia vietnamiensis
           G4]
 gi|134139901|gb|ABO55644.1| tyrosine recombinase XerD [Burkholderia vietnamiensis G4]
          Length = 320

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 88/318 (27%), Positives = 138/318 (43%), Gaps = 20/318 (6%)

Query: 7   PEIVSFELLKERQN---WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           P   S   L  R +   +   L +E GLS+ TL +Y  D   F  +LA           +
Sbjct: 18  PLAASPAQLASRASIDLFCDALWLEHGLSRNTLDAYRRDLMLFSQWLAATHH-----AAL 72

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
                  +  +I+ R   K    S  R LS  + +  +  +    +    L + + K+  
Sbjct: 73  DSADEAMVTGYIAARSDGK--ATSSNRRLSVFRRYYGWAVREHRASADPTLRIASAKQGA 130

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
             P  L+E Q   L+             +  R+  +L L+Y  GLR+SE ++L    +  
Sbjct: 131 RFPSTLSEAQVEALL-----GAPDIGTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGL 185

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           ++  +R+ GKG K R+VP        I  Y     P  L       LF   RG  +    
Sbjct: 186 NEGVVRVMGKGSKERLVPFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQ 245

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           F   I++  +   +    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V 
Sbjct: 246 FWNIIKRHAQRADVRAHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVA 305

Query: 303 SKNGGDWMMEIYDQTHPS 320
            +     +  ++ Q HP 
Sbjct: 306 RER----LRTLHAQHHPR 319


>gi|209521419|ref|ZP_03270129.1| tyrosine recombinase XerC [Burkholderia sp. H160]
 gi|209498137|gb|EDZ98282.1| tyrosine recombinase XerC [Burkholderia sp. H160]
          Length = 307

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 84/321 (26%), Positives = 156/321 (48%), Gaps = 29/321 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                +L +LE ER LS  TL+ Y  +  +         ++    + +  L+  +IR  +
Sbjct: 5   DPIAAYLSHLEHERRLSAHTLRGYTHELEEL--------KQLAKGRPLESLTAVDIRGAV 56

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++     +  RS+   LS  ++F ++L  R     + +  +R  K++ +LP+AL+   A 
Sbjct: 57  ARAHAGGLTARSIGHRLSAWRAFYRWLAGRVELPANPVAAVRAPKQAKTLPKALSVDDAA 116

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-----------DD 184
            L+DN    +         R+ A+L L Y  GLR++E + L  +               D
Sbjct: 117 RLMDNPAADSPE-----GLRDHAMLELFYSSGLRLAELVGLDVRFADIDGHRSAGWLKLD 171

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
            + + + GKG++ R+VP+      A+  +  +    +  +   PLF   RG  L+P V +
Sbjct: 172 AAEVEVLGKGNRRRVVPVGSKAVAALNAWLGVRDQMVRHDPH-PLFLSTRGNRLSPNVVR 230

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  ++ TQ+YT ++ +
Sbjct: 231 ERVKRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTGLDFQ 290

Query: 305 NGGDWMMEIYDQTHPSITQKD 325
           +    +  +YD  HP   +++
Sbjct: 291 H----LAHVYDSAHPRAKKRN 307


>gi|240170588|ref|ZP_04749247.1| site-specific tyrosine recombinase XerC [Mycobacterium kansasii
           ATCC 12478]
          Length = 302

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 135/305 (44%), Gaps = 12/305 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   L ++ G S  T ++Y  D R    FLA           +  LS   +RA+++ 
Sbjct: 9   LEEFDDYLALQCGRSAHTRRAYLGDLRLLFAFLADRG------SALETLSLPLLRAWLAS 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +   +L R  S +K+F  +  +R + T      ++  K   +LP  L + QAL  
Sbjct: 63  ASGAGVARTTLARRTSAVKAFTAWAVRRGLLTGDPAARLQVPKAHRTLPAVLRQDQALAA 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +         +   +  R+  I+ LLY  G+R+SE   L   ++      +R+ GKG+K 
Sbjct: 123 MTAAKSGA-EQGDPLALRDRLIVELLYATGIRVSELCGLDIDDVDTGHRVVRVLGKGNKQ 181

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R VP      +A+  +       L      P L  G RG+ L+    +  + Q    +  
Sbjct: 182 RTVPYGRPAAEALQAWLADGRPALVTAESGPALLLGARGRRLDARQARTVVHQTVAAVNG 241

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V      + +  ++DQ
Sbjct: 242 APDIGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHV----AVNRLRAVHDQ 297

Query: 317 THPSI 321
            HP  
Sbjct: 298 AHPRA 302


>gi|190572731|ref|YP_001970576.1| site-specific tyrosine recombinase XerD [Stenotrophomonas
           maltophilia K279a]
 gi|190010653|emb|CAQ44262.1| putative integrase/recombinase [Stenotrophomonas maltophilia K279a]
          Length = 325

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 93/326 (28%), Positives = 146/326 (44%), Gaps = 25/326 (7%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
             LPE+ + + ++  Q +L  +  E GL++ TL SY  D      ++         I+  
Sbjct: 15  QQLPELRADDSMR-IQRFLDAIWAENGLARATLDSYRRDLEGLARWMDGRDGGLAGIERP 73

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
                  +  +++ R       RS  R LS +++F     +R    E     +   K   
Sbjct: 74  G------LFDYLAWRTRHGWSPRSNARLLSALRAFFADGVRRGERGEDPSALLDPPKLPR 127

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            LP+AL E+Q   L+             +  R+ A+L L+Y  GLR+SE + L    +  
Sbjct: 128 LLPKALAERQIDALL-----AVPDIDSPLGLRDRAMLELMYAAGLRVSELVLLPATAVNL 182

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN--------LNIQLPLFRGIRG 235
            Q  LR+ GKG K R+VPL    +  +  Y       L          + Q PLF     
Sbjct: 183 RQGVLRVTGKGSKERLVPLGEESQHWLERYLQASRPLLVGKGKVQALADGQTPLFVEPTL 242

Query: 236 KPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
             L    F   +++  +  G+ P   + H LRHSFATHLL+ G DLR++Q +LGH  LST
Sbjct: 243 HALTRQAFWHLVKRHAQVAGIDPARISPHGLRHSFATHLLNRGADLRALQMLLGHSSLST 302

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPS 320
           TQIYT V  ++    + +++ + HP 
Sbjct: 303 TQIYTLVAREH----LQKLHARHHPR 324


>gi|171464293|ref|YP_001798406.1| integrase family protein [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171193831|gb|ACB44792.1| integrase family protein [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 333

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 94/335 (28%), Positives = 161/335 (48%), Gaps = 33/335 (9%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           + EL    Q +L  L + R LS  TL++Y  D      F    T E      + ++S   
Sbjct: 5   ATELHPLMQEYLHELHVLRQLSPHTLKAYGMDLSDLQNFALEDTVE------LLKVSNGH 58

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE------------SNILNMRN 118
           +R +  +  ++    RS+ R+LS  + +  +L ++    +            + + +++ 
Sbjct: 59  VRRWAGRLHSKGKSPRSIARTLSAWRGWYDWLSEKDARRDVHAGKVTSALVANPVDDVKA 118

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            K+  SLP+AL+ +QAL LV+  +     +      R++AI+ LLY  GLR+SE L +  
Sbjct: 119 PKRPKSLPKALSVEQALALVNQAVKEAEEKKDLESIRDAAIIGLLYSSGLRLSELLGIDV 178

Query: 179 QNI-----------MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
                           D + + + GKG K R VP+     K++  + +L          +
Sbjct: 179 IQSKDRQHESAGWLDWDAAEVTVLGKGGKRRSVPVGVPAMKSLAAWRELRDDGSYAEESI 238

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
            LF    GK L+P   Q  +R L    GLP     H +RHSFA+H+L +  DLR++Q +L
Sbjct: 239 ALFLSATGKRLSPRTVQARLRTLAMRAGLPTHVHPHMMRHSFASHVLQSSQDLRAVQEML 298

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           GH  +++TQIYT+++S++    + + YD+THP   
Sbjct: 299 GHASIASTQIYTSLDSQH----LAQAYDKTHPRAK 329


>gi|167644210|ref|YP_001681873.1| site-specific tyrosine recombinase XerC [Caulobacter sp. K31]
 gi|167346640|gb|ABZ69375.1| integrase family protein [Caulobacter sp. K31]
          Length = 306

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 126/314 (40%), Positives = 175/314 (55%), Gaps = 10/314 (3%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S         WL++L  ER  S  T+++Y  +   +L FL  +  E  ++  +  ++  
Sbjct: 1   MSATARAALSAWLEHLTHERRASPRTVRAYGDNVLAYLNFLERHRGEPQSVSDLGGITAA 60

Query: 70  EIRAFISKRRT--QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
           E+RA+++ RR     +  RSL +SLS I++F +YL  R  T  + I  +R  +     PR
Sbjct: 61  ELRAYLAFRREGENGLSPRSLSQSLSSIRAFHRYLDHRLDTPNAAIGLVRGPRIKVGAPR 120

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            ++E QA  L+  + L +  E  W  AR+ A+L LL+GCGLRISE LSL  ++    +S 
Sbjct: 121 PVSEDQAHGLIAEISLDSDRE-DWEVARDEAVLTLLWGCGLRISEGLSLLRRDAPLAES- 178

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           LRI GKG K RIVP+L  VR+ I  Y    PF L  +   PLFR  RG PL+P   Q  +
Sbjct: 179 LRITGKGGKTRIVPVLDIVRERIDAYLAALPFALEPD--DPLFRAKRGGPLSPRHVQATM 236

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           + LR  LGL    T H LRHSFATHLL  G DLRSIQ +LGH  LSTTQ YT V++    
Sbjct: 237 QHLRSRLGLSDRATPHALRHSFATHLLGAGADLRSIQDLLGHASLSTTQRYTQVDAA--- 293

Query: 308 DWMMEIYDQTHPSI 321
             ++  Y + HP  
Sbjct: 294 -GLLAAYGKAHPRA 306


>gi|47097538|ref|ZP_00235075.1| integrase/recombinase XerC [Listeria monocytogenes str. 1/2a F6854]
 gi|254828640|ref|ZP_05233327.1| integrase/recombinase XerC [Listeria monocytogenes FSL N3-165]
 gi|254898558|ref|ZP_05258482.1| hypothetical protein LmonJ_02045 [Listeria monocytogenes J0161]
 gi|254911951|ref|ZP_05261963.1| integrase/recombinase XerC [Listeria monocytogenes J2818]
 gi|254936278|ref|ZP_05267975.1| integrase/recombinase XerC [Listeria monocytogenes F6900]
 gi|47014086|gb|EAL05082.1| integrase/recombinase XerC [Listeria monocytogenes str. 1/2a F6854]
 gi|258601039|gb|EEW14364.1| integrase/recombinase XerC [Listeria monocytogenes FSL N3-165]
 gi|258608867|gb|EEW21475.1| integrase/recombinase XerC [Listeria monocytogenes F6900]
 gi|293589913|gb|EFF98247.1| integrase/recombinase XerC [Listeria monocytogenes J2818]
          Length = 300

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 142/305 (46%), Gaps = 15/305 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +   L  ER  S  T  +YE D   F  FL      +  I T +Q+++ ++R ++++ 
Sbjct: 9   QQFFDYLHSERNYSVNTSTAYENDLLDFRRFL-----NEQAITTYQQVTFLDVRIYLTEL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + +     ++ R +S ++SF  +L +  +  E+    + + K    LP+    ++   L 
Sbjct: 64  KQKSFSRTTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEMEALF 123

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             V      + + +  R+  +L +LYG G+R+SE   +   ++      + I+GKG+K R
Sbjct: 124 QVVY----EDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKER 179

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            VP       AI +Y       ++        L     G PL     +  + ++     L
Sbjct: 180 YVPFGAYAEDAITDYLPERVNLMSRYKKSHDALLVNHYGDPLTTRGIRYCLTKIISKASL 239

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRH+FAT LL+NG D+R++Q +LGH  LS+TQIYT+V  ++    +   Y +
Sbjct: 240 TRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----LKSTYMK 295

Query: 317 THPSI 321
            HP  
Sbjct: 296 HHPRA 300


>gi|313204480|ref|YP_004043137.1| tyrosine recombinase xerd subunit [Paludibacter propionicigenes
           WB4]
 gi|312443796|gb|ADQ80152.1| tyrosine recombinase XerD subunit [Paludibacter propionicigenes
           WB4]
          Length = 302

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 91/314 (28%), Positives = 155/314 (49%), Gaps = 16/314 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +L     +   L++E+ LS  T+ +YE D ++  ++L+    +        + +   +R 
Sbjct: 1   MLPIPDEYHLYLKLEKALSANTIDAYERDLQKLTVYLSEAHVKP------EEATTEILRD 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           FI +  +  I  RS  R LS IKSF  +L  + +        + + K    LP  L+  +
Sbjct: 55  FIIEISSLGIHPRSQARILSSIKSFYHFLIYKDVIDNDPTELLESPKTGLRLPEVLSLNE 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              +V  + L     +K    RN AI+ +LYG GLR+SE + L    +  D+  + ++GK
Sbjct: 115 IDDIVSAIDL-----SKPEGQRNKAIIEVLYGSGLRVSELIGLQLSKMYMDEGYMLVEGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K R+VP+ P   K I  +       D+    +  LF   RG  L   +  + +++L  
Sbjct: 170 GSKQRLVPMSPQAMKQIELWKTDRNLLDIKKGNEDCLFLNRRGSKLTRDMIFKIVKELAL 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+  + + HT RHSFATHLL NG +LR+IQ +LGH  ++TT+IYT+++      ++ +
Sbjct: 230 LAGIRKNVSPHTFRHSFATHLLENGANLRAIQQLLGHESITTTEIYTHID----VHFLRQ 285

Query: 313 IYDQTHPSITQKDK 326
              + HP     +K
Sbjct: 286 TVLECHPFYRDSNK 299


>gi|188586009|ref|YP_001917554.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|254799348|sp|B2A335|XERC_NATTJ RecName: Full=Tyrosine recombinase xerC
 gi|179350696|gb|ACB84966.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 299

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 87/313 (27%), Positives = 148/313 (47%), Gaps = 19/313 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  E  ++L+ L+ E+ LS  T+ +Y  D  Q   F      E+  +    ++++  IR 
Sbjct: 1   MRNELLDFLEFLKGEKNLSHYTVDNYYKDLTQAENFFN----EQFELYQWDEVTHKHIRH 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F++  + +     +  R LS I+S  K+L + +    +    +   KK   LP  L+ ++
Sbjct: 57  FLAYLKDKNYEKSTTARKLSAIRSLFKFLTREEKIRSNTSALLATPKKERKLPEFLSIEE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++      +        R+ AIL + Y  G+R+ E   L  QN+      L++ GK
Sbjct: 117 VEMLIN------APGDDPFGLRDKAILEVFYCSGIRLGELWGLDLQNLDLQTGYLKVTGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-----NLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           G+  R+ PL      AI +Y      +L     ++     LF    G  ++    +R ++
Sbjct: 171 GNIERLAPLGSFALAAIEDYLYNARPELLKKNKSVENCDALFLNKFGTRISQRSIRRRVK 230

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +  +        + H+LRHSFATHLL  G DLR++Q +LGH  +STTQIYT+VN      
Sbjct: 231 KYVQQTASEHRVSPHSLRHSFATHLLEGGADLRAVQELLGHVNISTTQIYTHVNQAR--- 287

Query: 309 WMMEIYDQTHPSI 321
            M E+Y++ HP  
Sbjct: 288 -MTEVYNKYHPRA 299


>gi|163759949|ref|ZP_02167033.1| tyrosine recombinase [Hoeflea phototrophica DFL-43]
 gi|162282907|gb|EDQ33194.1| tyrosine recombinase [Hoeflea phototrophica DFL-43]
          Length = 313

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 86/319 (26%), Positives = 145/319 (45%), Gaps = 18/319 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
              + +L+ +  ERG +  TL++Y  D       +           T+ + +   IR  I
Sbjct: 7   AHVEAFLEMMSAERGAALNTLEAYRRDLDDASSVVKALG------STLDRANADTIRTVI 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           S    +     S  R LS ++ F K+L    +  +     + + +K  SLP+ L+     
Sbjct: 61  SDLAARGFSPASQARRLSALRQFYKFLHAEGLRDDDPTGVVESPRKRRSLPKILSVDDVS 120

Query: 136 TLV---DNVLLHTSHETKWIDARN-SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            L+   +  +     E++        A+L LLY  G+R+SE + L  + + +D   L I+
Sbjct: 121 RLLAQAEADISKARDESETTQRIRFRALLELLYATGMRVSELVGLPYRVLAEDGRFLIIR 180

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR-GIRGKPLNPGVFQRYIRQL 250
           GKG K R+VP+    R A+  +               LF        L+  VF R ++ +
Sbjct: 181 GKGAKERMVPMSRPARLALEAWM--AEIGEVAEETGFLFPANSSDGHLSRQVFARELKDV 238

Query: 251 RRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
               GLP    + H LRH+FA+HLL+ G DLR++Q +LGH  +STTQIYT+V  +     
Sbjct: 239 AARAGLPSAKVSPHVLRHAFASHLLAGGADLRAVQKLLGHTDISTTQIYTHVLDER---- 294

Query: 310 MMEIYDQTHPSITQKDKKN 328
           + ++  + HP   Q   ++
Sbjct: 295 LKQLVSEHHPLAKQPKNRD 313


>gi|187930760|ref|YP_001901247.1| site-specific tyrosine recombinase XerC [Ralstonia pickettii 12J]
 gi|254799354|sp|B2U7W2|XERC_RALPJ RecName: Full=Tyrosine recombinase xerC
 gi|187727650|gb|ACD28815.1| tyrosine recombinase XerC [Ralstonia pickettii 12J]
          Length = 328

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 92/324 (28%), Positives = 155/324 (47%), Gaps = 29/324 (8%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           +   +L  L+ ER LS  TLQSY  +       L     +      + QL    IR  ++
Sbjct: 18  QIAAYLDALKFERQLSPHTLQSYTREL----AVLQRLGAQHAANIDLTQLQSHHIRRMMA 73

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNILNMRNLKKSNSLPRALNEKQAL 135
           +     +  RS+ R+LS  + + K++  R    T + +  +R  K    LP+AL+ +QA+
Sbjct: 74  QLHGDGLSGRSIARALSAWRGWFKWMALRDAAVTANPVDGVRAPKSPKRLPKALSVEQAV 133

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-----------MDD 184
            L++ +             R+ A+  L Y CGLR+SE +SL  +++             +
Sbjct: 134 ALMEQL-----PGDDAETIRDRAVNELFYSCGLRLSELVSLDMRHVKAGAYESASWLDLE 188

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF----DLNLNIQLPLFRGIRGKPLNP 240
              +++ GKG K R VP+     +A+  +  +       D        LF   RGK L  
Sbjct: 189 AREVQVLGKGSKRRTVPVGTKATEALAAWLAVRAQLAKSDAAPEDAHALFLSPRGKRLAQ 248

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              Q  +++     G+P     H LRHSFATH+L + GDLR++Q +LGH  +++TQ+YT+
Sbjct: 249 RQIQLRMKRNAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTS 308

Query: 301 VNSKNGGDWMMEIYDQTHPSITQK 324
           ++ ++    + +IYDQ HP   +K
Sbjct: 309 LDFQH----LAKIYDQAHPRAKKK 328


>gi|16800384|ref|NP_470652.1| hypothetical protein lin1316 [Listeria innocua Clip11262]
 gi|34222949|sp|Q92C75|XERC_LISIN RecName: Full=Tyrosine recombinase xerC
 gi|16413789|emb|CAC96547.1| codV [Listeria innocua Clip11262]
          Length = 300

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 143/305 (46%), Gaps = 15/305 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L  ER  S+ T  +YE D   F  FL      +  I   +Q+++ ++R ++++ 
Sbjct: 9   KRFLDYLHSERNYSEHTSTAYENDLSDFRRFL-----NEQAIIEYQQVTFLDVRIYLTEL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + +     ++ R +S ++SF  +L +  + TE+    + + K    LP+    ++   L 
Sbjct: 64  KQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEMEALF 123

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             V      + + +  R+  IL +LYG G+R+SE   +   ++      + I+GKG+K R
Sbjct: 124 QVVY----EDNETLTLRDRVILEVLYGTGIRVSECAGIMLSDLDTSYQAILIRGKGNKER 179

Query: 199 IVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            VP       AI +Y       +         L     G PL     +  + ++     L
Sbjct: 180 YVPFGAYAEDAITDYLSGRIELMTRFKKTHDSLLINHYGDPLTTRGIRYCLTKIISKASL 239

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRH+FAT LL+NG D+R++Q +LGH  LS+TQIYT+V  ++    +   Y +
Sbjct: 240 TRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----LKSTYMK 295

Query: 317 THPSI 321
            HP  
Sbjct: 296 HHPRA 300


>gi|194364318|ref|YP_002026928.1| site-specific tyrosine recombinase XerD [Stenotrophomonas
           maltophilia R551-3]
 gi|194347122|gb|ACF50245.1| tyrosine recombinase XerD [Stenotrophomonas maltophilia R551-3]
          Length = 325

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 94/326 (28%), Positives = 145/326 (44%), Gaps = 25/326 (7%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
             LPE+ + + L+  Q +L  +  E GL++ TL SY  D      +          I+  
Sbjct: 15  QQLPELRADDSLR-IQRFLDAIWAENGLARATLDSYRRDLEGLARWTDGREGGLAGIERP 73

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
                  +  +++ R       RS  R LS +++F     +R   +E     +   K   
Sbjct: 74  G------LFDYLAWRTRHGWSPRSNARLLSALRAFFADGVRRGDRSEDPSALLDPPKLPR 127

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            LP+AL E Q   L+             +  R+ A+L L+Y  GLR+SE + L    +  
Sbjct: 128 LLPKALAESQIDALL-----AAPDIDSPLGLRDRAMLELMYAAGLRVSELVLLPATAVNL 182

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN--------LNIQLPLFRGIRG 235
            Q  LR+ GKG K R+VPL    +  +  Y       L          + Q PLF     
Sbjct: 183 RQGVLRVTGKGSKERLVPLGEESQHWLERYLQQSRPQLVGKGKVQALADGQTPLFIEPTL 242

Query: 236 KPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
             L    F   +++  +  G+ P   + H LRHSFATHLL+ G DLR++Q +LGH  LST
Sbjct: 243 HALTRQAFWHLVKRHAQVAGIDPARISPHALRHSFATHLLNRGADLRALQMLLGHSSLST 302

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPS 320
           TQIYT V  ++    + +++ + HP 
Sbjct: 303 TQIYTLVAREH----LQKLHARHHPR 324


>gi|313633457|gb|EFS00282.1| tyrosine recombinase XerC [Listeria seeligeri FSL N1-067]
          Length = 300

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 84/308 (27%), Positives = 146/308 (47%), Gaps = 15/308 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q +L  L  ER  S+ T  +YE D   F  FL      +  I    Q+++ ++R ++
Sbjct: 6   KWEQLFLDYLHSERNYSENTSTAYENDLIDFRRFL-----NEQAITEYSQVTFLDVRIYL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++ + +     ++ R +S ++SF  +L +  + TE+    + + K    LP+    ++  
Sbjct: 61  TELKQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEME 120

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L   V      + + +  R+  +L +LYG G+R+SE   +   +I     ++ I+GKG+
Sbjct: 121 ALFQVVY----EDNETLTLRDRVLLEVLYGTGIRVSECAGILLTDIDKTYQSILIRGKGN 176

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R VP       AI +Y D     +         L     G+PL     +  + ++   
Sbjct: 177 KERYVPFGAYAEDAITDYLDSRIELMKHFNKTHDSLLINHYGEPLTTRGIRYCLTKIISK 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRH+FAT LL+NG D+R++Q +LGH  LS+TQIYT+V  ++    +   
Sbjct: 237 ASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----LKST 292

Query: 314 YDQTHPSI 321
           Y + HP  
Sbjct: 293 YMKHHPRA 300


>gi|108798958|ref|YP_639155.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. MCS]
 gi|119868073|ref|YP_938025.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. KMS]
 gi|123070325|sp|Q1BAI5|XERC_MYCSS RecName: Full=Tyrosine recombinase xerC
 gi|166918890|sp|A1UEH7|XERC_MYCSK RecName: Full=Tyrosine recombinase xerC
 gi|108769377|gb|ABG08099.1| tyrosine recombinase XerC subunit [Mycobacterium sp. MCS]
 gi|119694162|gb|ABL91235.1| tyrosine recombinase XerC subunit [Mycobacterium sp. KMS]
          Length = 300

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 137/305 (44%), Gaps = 10/305 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              + Q L +ERG S  T ++Y  D R    F      E+     +  L+   +RA++S 
Sbjct: 5   LDAFDQYLALERGRSDHTRRAYLGDLRSLFAFCN----ERTPGADLGSLTLPVLRAWLSA 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +        +L R  S +K+F  +  +R +        ++  K   +LP  L + QA   
Sbjct: 61  QAAAGTARTTLARRTSAVKTFTAWAVRRGLMASDPATRLQMPKARRTLPAVLRQDQARDA 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D      + +   +  R+  I+ +LY  G+R+SE   L   ++   +  LR+ GKGDK 
Sbjct: 121 LDA-ANSGAQQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTSRRLLRVLGKGDKQ 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R VP      +A+  +       L      P L  G RG+ L+P   +  + +    +  
Sbjct: 180 RTVPFGEPAEQALRAWLTSGRPALATAESGPALLLGARGRRLDPRQARTVVHETVGAVAG 239

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V        +  ++DQ
Sbjct: 240 APDIGPHGLRHSAATHLLEGGADLRIVQELLGHSTLATTQLYTHVTVAR----LRAVHDQ 295

Query: 317 THPSI 321
            HP  
Sbjct: 296 AHPRA 300


>gi|313501207|gb|ADR62573.1| XerC [Pseudomonas putida BIRD-1]
          Length = 299

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 83/312 (26%), Positives = 150/312 (48%), Gaps = 17/312 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++ + +  +L  ER +S+ T Q Y  D  + + +      E+  I   + L   ++R 
Sbjct: 1   MKRQLEAYCAHLRNERQVSEHTSQGYRRDLEKVIAYC-----EEHGIADWQALQIQQLRQ 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            I++        RSL R LS ++   +YL +  +        +   K    LP+ L+  +
Sbjct: 56  LIARLHHHGQSPRSLARLLSAVRGLYRYLNREGLCQHDPATGLSAPKGERRLPKVLDTDR 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           AL L+D  +     +  +I  R+ AIL L Y  GLR+SE  +L   ++      +++ GK
Sbjct: 116 ALQLLDGGV-----DDDFIARRDQAILELFYSSGLRLSELTNLDLDHLDLAAGLVQVLGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R++P+    R+A+  +Y L    +       +F   +G  ++P   +  ++     
Sbjct: 171 GGKARVLPVGRKAREALQAWYRLRG--IGNPRDRAVFITRQGNRISPRAVRLRVKVAGER 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRHSFA+H+L +  DLR++Q +LGH  +STTQIYT+++ ++    +  +
Sbjct: 229 -ELGQHLHPHMLRHSFASHVLESSQDLRAVQEMLGHADISTTQIYTHLDFQH----LAAV 283

Query: 314 YDQTHPSITQKD 325
           YD  HP   +  
Sbjct: 284 YDSAHPRAKRSK 295


>gi|169795024|ref|YP_001712817.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE]
 gi|301345401|ref|ZP_07226142.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB056]
 gi|301511585|ref|ZP_07236822.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB058]
 gi|332854278|ref|ZP_08435278.1| putative tyrosine recombinase XerC [Acinetobacter baumannii
           6013150]
 gi|332865654|ref|ZP_08436480.1| putative tyrosine recombinase XerC [Acinetobacter baumannii
           6013113]
 gi|169147951|emb|CAM85814.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE]
 gi|332728094|gb|EGJ59483.1| putative tyrosine recombinase XerC [Acinetobacter baumannii
           6013150]
 gi|332735175|gb|EGJ66255.1| putative tyrosine recombinase XerC [Acinetobacter baumannii
           6013113]
          Length = 308

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 90/306 (29%), Positives = 167/306 (54%), Gaps = 14/306 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+  +I+   S+ T+ +YE D R FL F       ++    +R +  +++R ++++R  
Sbjct: 15  WLKERKIQNQ-SEHTITAYERDVRSFLEFC------ELKKVDLRNVEASDLREYLAQRVE 67

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           Q ++   S++R L+ I+ F+K+ ++ K    +   + +  ++   LP  ++ +    ++D
Sbjct: 68  QDQLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILD 127

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             +     + + +  R+ A+L LLY  GLR++E   LT ++I  ++  +RI GKG+K RI
Sbjct: 128 QPMPEKPIDQQ-LWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRI 186

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP     ++++L +  +         Q   +F   RG  L P   ++ ++   +  G+ +
Sbjct: 187 VPFGKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNV 246

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRH FA+H+LS+ GDLRS+Q +LGH  LSTTQIYT+++     D + ++YDQ H
Sbjct: 247 DLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHLAQVYDQAH 302

Query: 319 PSITQK 324
           P  T+ 
Sbjct: 303 PRATKH 308


>gi|262184376|ref|ZP_06043797.1| site-specific tyrosine recombinase XerC [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 292

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 77/309 (24%), Positives = 140/309 (45%), Gaps = 20/309 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L +  +++ +   I RG S+ T++ Y  D R               +      +   +R
Sbjct: 4   QLEEAIEDFAEYQRIVRGRSEATVRGYCSDLRLLA----------PEVPEFAAFTLNSLR 53

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            +++    +     +L R  + +++F  +  +           +   K    LP  ++  
Sbjct: 54  EWLAHAVAEGKSRSTLARRTAAVRAFSTWAAREGYLESDVAQRLATPKVGKHLPTVMSPT 113

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
            A  L+ N         +    R+SA+L  LY  G+R++E + L   +I   + T R+ G
Sbjct: 114 AAGELMGN----AVSTDEVHFLRDSAMLEFLYATGVRVAELVGLDVGDIDLSRRTARVTG 169

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG+K R+VP   +   A+  +      +L    +  +F G RG  ++    +R + +  +
Sbjct: 170 KGNKQRVVPFGDAAHDALCAWLKTGRPELAGETE-AVFVGTRGGRIDARQVRRVVERAAQ 228

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G P   T H LRHS ATHLL  G DLR +Q +LGH  L TTQ+YT+V+++     + +
Sbjct: 229 VTGAP-GLTPHGLRHSAATHLLEGGADLRIVQELLGHSSLQTTQVYTHVSAQR----LKD 283

Query: 313 IYDQTHPSI 321
           +Y ++HP  
Sbjct: 284 VYARSHPRA 292


>gi|313884807|ref|ZP_07818559.1| putative tyrosine recombinase XerC [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619498|gb|EFR30935.1| putative tyrosine recombinase XerC [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 304

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 98/316 (31%), Positives = 160/316 (50%), Gaps = 14/316 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  E   ++  ++ E+  S LT Q+Y+ D ++F  FLA    ++     ++ +SY +IR 
Sbjct: 1   MQAEISRFITYIQDEKRYSPLTAQAYQRDLKEFAHFLASSGNDQ-----VQSISYYDIRL 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           FI+    +++   S+ R LS ++SF K+++      ++ +  +    K   LP    E +
Sbjct: 56  FIAFLNEKRLSRTSIARKLSTLRSFFKFMQVETKLDQNPMDLVNYQVKKQRLPDFFYEDE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L    L   +     +  RN AIL +LY  GLR+SE   L    +      LR+ GK
Sbjct: 116 MQAL----LKAAAESEHPLALRNQAILEVLYASGLRVSECRLLELGQVDFLAQVLRVHGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRR 252
           G+K RIVP+  S  + + +Y       L++  Q   +F   +GK L      + + ++  
Sbjct: 172 GNKERIVPMSDSASQTMQDYIKYLRPKLDVTGQAKQVFLSNKGKTLTTRQVSQILNEIVA 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L LS   H LRH+FATHLL+NG DLRS+Q +LGH  LS+TQIYT++      D + E
Sbjct: 232 EGALNLSIHPHKLRHTFATHLLNNGADLRSVQEMLGHADLSSTQIYTHIT----KDKLRE 287

Query: 313 IYDQTHPSITQKDKKN 328
            Y   HP   ++ K++
Sbjct: 288 NYMHLHPRAHRQTKED 303


>gi|329114535|ref|ZP_08243294.1| Tyrosine recombinase XerC [Acetobacter pomorum DM001]
 gi|326696015|gb|EGE47697.1| Tyrosine recombinase XerC [Acetobacter pomorum DM001]
          Length = 315

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 109/321 (33%), Positives = 170/321 (52%), Gaps = 26/321 (8%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  Q +L+ + +E+  S LT+++Y+ D  +FL F+  + +    +  +  +S  + RA++
Sbjct: 5   EAVQKFLEWMAVEKQASPLTIEAYQGDLARFLGFMTTHLDGLPDMVGLGLISLRDFRAWL 64

Query: 76  SKRRTQKIGD-----------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           +  + +               R+  R +S ++SF KYL +R+      I  +   +    
Sbjct: 65  AYEQAEASKPTARKTSSDQATRTRARRVSAVRSFFKYLARRQGVENPAIQLLSTPRTKKP 124

Query: 125 LPRALNEKQALTLVD--NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           LPR L + QAL   +  + L HT  E +     ++A+  LLYGCGLRISEAL+L   ++ 
Sbjct: 125 LPRPLAKDQALAAPEDISDLAHTPMEQQR----DAALFLLLYGCGLRISEALNLNIADLD 180

Query: 183 --DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                + LRI GKG K R+VP+LP V++A+  +              PLF GIRGK L P
Sbjct: 181 VMRSSNVLRILGKGGKERLVPVLPVVQQALEAW---RGRHPAPTPDAPLFVGIRGKRLQP 237

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            + Q+ +R+ R   GLP   T H LRHSFATHL+  G DLR IQ +LGH  LSTTQ YT 
Sbjct: 238 AIAQKAMREWRHLSGLPDYVTPHALRHSFATHLMEGGADLRVIQELLGHASLSTTQRYTL 297

Query: 301 VNSKNGGDWMMEIYDQTHPSI 321
            +       +++++ + HP  
Sbjct: 298 ADEAR----LLDVWTRAHPRA 314


>gi|237711564|ref|ZP_04542045.1| integrase [Bacteroides sp. 9_1_42FAA]
 gi|237725982|ref|ZP_04556463.1| integrase [Bacteroides sp. D4]
 gi|265752992|ref|ZP_06088561.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_33FAA]
 gi|229435790|gb|EEO45867.1| integrase [Bacteroides dorei 5_1_36/D4]
 gi|229454259|gb|EEO59980.1| integrase [Bacteroides sp. 9_1_42FAA]
 gi|263236178|gb|EEZ21673.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_33FAA]
          Length = 308

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 89/309 (28%), Positives = 145/309 (46%), Gaps = 16/309 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            + Q L++E+ LS  T+ +Y  D  + L +L     E I I  +R      +  F +   
Sbjct: 13  KYRQYLKLEKSLSDNTVDAYLTDLDKLLAYLTL---ENINILDVR---LENLEDFSAGLH 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              I  RS  R LSGI+SF ++L             + + +    LP  +  ++   L+ 
Sbjct: 67  DIGIHPRSQARILSGIRSFYRFLIMEDYLESDPTELLESPQTGFKLPEVMTVEEIDLLI- 125

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                +         RN AIL  LY CGLR+SE  +L    +  ++  ++++GKG K R+
Sbjct: 126 ----GSIDRGTKEGQRNRAILETLYSCGLRVSELCNLKLSELYFEEGFIKVEGKGSKQRL 181

Query: 200 VPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+ P   K I  Y+       +    +  +F    GK ++  +    I++L   +GL  
Sbjct: 182 VPISPRAIKEIRLYFTDRNLMKIKPGFEDFVFISNFGKNISRIMVFHIIKELAERIGLKK 241

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HT RHSFATHLL  G +LR+IQ +LGH  + TT+IYT+++       ++E     H
Sbjct: 242 KISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHIDRNMLRSEIIE----HH 297

Query: 319 PSITQKDKK 327
           P   +  +K
Sbjct: 298 PRNIKFREK 306


>gi|28572470|ref|NP_789250.1| DNA recombinase [Tropheryma whipplei TW08/27]
 gi|28410602|emb|CAD66988.1| putative DNA recombinase [Tropheryma whipplei TW08/27]
          Length = 306

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 101/304 (33%), Positives = 162/304 (53%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + ++  LE  RG S  T ++Y  D   F  ++  +   +  ++++R +S  ++R+++  
Sbjct: 16  IREFIIYLENVRGYSSHTCRAYYRDLMCFGEYIITHDSRE-NVKSLRDVSIQDLRSWLYS 74

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +  +    RS++R++S +KSF ++   RKIT ++    +R  K ++ LP  L+EK+   +
Sbjct: 75  QSHK--SARSIRRAVSSLKSFFRWAYDRKITAQNTAAALRAPKSTSQLPSVLSEKRIAQI 132

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           + N     SH    I  RN+AI  LLY   +R+SE +SL   +I  D  T+R+ GK  K 
Sbjct: 133 LGNF----SHTVPVIQLRNTAIFELLYASAIRVSELVSLDLDSIDHDLCTVRVDGKNGKQ 188

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+V        A+  Y ++    L+      LF G RG+ +NP V  R + +L       
Sbjct: 189 RVVLFGKPASHALDLYLNMRHTLLSDRSSKALFLGSRGRRINPRVVYRLVSELLEM--PK 246

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRHS ATH+L NG DLRS+Q ILGH  LSTTQIYT+V+ +     ++  Y+Q 
Sbjct: 247 GPRGPHVLRHSAATHMLDNGADLRSLQEILGHSSLSTTQIYTHVSLER----LISSYNQA 302

Query: 318 HPSI 321
           HP  
Sbjct: 303 HPRA 306


>gi|126434558|ref|YP_001070249.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. JLS]
 gi|166918889|sp|A3PXY1|XERC_MYCSJ RecName: Full=Tyrosine recombinase xerC
 gi|126234358|gb|ABN97758.1| tyrosine recombinase XerC subunit [Mycobacterium sp. JLS]
          Length = 300

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 139/305 (45%), Gaps = 10/305 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              + Q L +ERG S  T ++Y  D R    F+    +E+     +  L+   +RA++S 
Sbjct: 5   LDAFDQYLALERGRSDHTRRAYLGDLRSLFAFV----DERTPGADLGSLTLPVLRAWLSA 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +        +L R  S +K+F  +  +R +        ++  K   +LP  L + QA   
Sbjct: 61  QAAAGTARTTLARRTSAVKTFTAWAVRRGLMASDPATRLQMPKARRTLPAVLRQDQARDA 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D      + +   +  R+  I+ +LY  G+R+SE   L   ++   +  LR+ GKGDK 
Sbjct: 121 LDA-ANSGAQQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTSRRLLRVLGKGDKQ 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R VP      +A+  +       L      P L  G RG+ L+P   +  + +    +  
Sbjct: 180 RTVPFGEPAEQALRAWLTSGRPALATAESGPALLLGARGRRLDPRQARTVVHETVGAVAG 239

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V        +  ++DQ
Sbjct: 240 APDIGPHGLRHSAATHLLEGGADLRIVQELLGHSTLATTQLYTHVTVAR----LRAVHDQ 295

Query: 317 THPSI 321
            HP  
Sbjct: 296 AHPRA 300


>gi|46907504|ref|YP_013893.1| integrase/recombinase XerC [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|226223880|ref|YP_002757987.1| integrase/recombinase [Listeria monocytogenes Clip81459]
 gi|254852669|ref|ZP_05242017.1| integrase/recombinase XerC [Listeria monocytogenes FSL R2-503]
 gi|254932406|ref|ZP_05265765.1| integrase/recombinase XerC [Listeria monocytogenes HPB2262]
 gi|255520259|ref|ZP_05387496.1| integrase/recombinase [Listeria monocytogenes FSL J1-175]
 gi|300765313|ref|ZP_07075297.1| integrase/recombinase XerC [Listeria monocytogenes FSL N1-017]
 gi|71153411|sp|Q720E4|XERC_LISMF RecName: Full=Tyrosine recombinase xerC
 gi|259710432|sp|C1L2I5|XERC_LISMC RecName: Full=Tyrosine recombinase xerC
 gi|46880772|gb|AAT04070.1| integrase/recombinase XerC [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|225876342|emb|CAS05051.1| Putative integrase/recombinase [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
 gi|258605987|gb|EEW18595.1| integrase/recombinase XerC [Listeria monocytogenes FSL R2-503]
 gi|293583963|gb|EFF95995.1| integrase/recombinase XerC [Listeria monocytogenes HPB2262]
 gi|300513996|gb|EFK41059.1| integrase/recombinase XerC [Listeria monocytogenes FSL N1-017]
 gi|328468566|gb|EGF39566.1| tyrosine recombinase xerC [Listeria monocytogenes 1816]
 gi|328475121|gb|EGF45905.1| tyrosine recombinase xerC [Listeria monocytogenes 220]
 gi|332311722|gb|EGJ24817.1| Tyrosine recombinase xerC [Listeria monocytogenes str. Scott A]
          Length = 300

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 81/308 (26%), Positives = 143/308 (46%), Gaps = 15/308 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q +   L  ER  S  T  +YE D   F  FL      +  I T +Q+++ ++R ++
Sbjct: 6   KLEQQFFDYLHSERNYSVNTSTAYENDLLDFRRFL-----NEQAITTYQQVTFLDVRIYL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++ + +     ++ R +S ++SF  +L +  +  E+    + + K    LP+    ++  
Sbjct: 61  TELKQKSFSRTTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEME 120

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L   V      + + +  R+  +L +LYG G+R+SE   +   ++      + I+GKG+
Sbjct: 121 ALFQVVY----EDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGN 176

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R VP       AI +Y       ++        L     G PL     +  + ++   
Sbjct: 177 KERYVPFGVYAEDAITDYLPERANLMSRYKKSHDALLVNHYGDPLTTRGIRYCLSKIISK 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRH+FAT LL+NG D+R++Q +LGH  LS+TQIYT+V  ++    +   
Sbjct: 237 ASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----LKST 292

Query: 314 YDQTHPSI 321
           Y + HP  
Sbjct: 293 YMKHHPRA 300


>gi|255011626|ref|ZP_05283752.1| putative site-specific recombinase [Bacteroides fragilis 3_1_12]
 gi|313149461|ref|ZP_07811654.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313138228|gb|EFR55588.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 293

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 77/303 (25%), Positives = 144/303 (47%), Gaps = 13/303 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L  L  ER  S+ T+ +Y  D  Q   F+    +E+I      ++    IR +I   
Sbjct: 4   DSFLDYLRYERNYSEKTVLAYGEDISQLQEFV----QEEIGEFNPLEVKPELIREWIVSL 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S+ R LS ++SF KYL ++   +   +  +   K    LP  L E +   L+
Sbjct: 60  MDRGYTSTSVNRKLSSLRSFYKYLLRQGEVSVDPLRKITGPKNKKPLPSFLKESEMNKLL 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D     T     +   R+  I+ + Y  G+R+SE + L  +++    S L++ GK +K R
Sbjct: 120 D----DTDFGEGFKGCRDRLIIEVFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQR 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++P    +++A+ EY D+    +++      F    G+ L   +    +++    +    
Sbjct: 176 LIPFGDELKEAMFEYVDVRNKVISVK-SDAFFVRENGERLYKNLVYNLVKRNLSKVVTLK 234

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FAT +L+N  +L +++ +LGH  L+TT+IYT+   +     + ++Y Q H
Sbjct: 235 KRSPHVLRHTFATTMLNNDAELGAVKELLGHSSLATTEIYTHTTFEE----LKKVYKQAH 290

Query: 319 PSI 321
           P  
Sbjct: 291 PRA 293


>gi|148550339|ref|YP_001270441.1| site-specific tyrosine recombinase XerC [Pseudomonas putida F1]
 gi|166918895|sp|A5WAU7|XERC_PSEP1 RecName: Full=Tyrosine recombinase xerC
 gi|148514397|gb|ABQ81257.1| tyrosine recombinase XerC subunit [Pseudomonas putida F1]
          Length = 299

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 82/312 (26%), Positives = 149/312 (47%), Gaps = 17/312 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++ + +  +L  ER +S+ TL  Y  D  + + +   +      I   + L   ++R 
Sbjct: 1   MKRQLEAYCAHLRNERQVSEHTLLGYRRDLEKVIAYCKEH-----GIAEWQALQIQQLRQ 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            I++        RSL R LS ++   +YL +  +        +   K    LP+ L+  +
Sbjct: 56  LIARLHHHGQSPRSLARLLSAVRGLYRYLNREGLCQHDPATGLSAPKGERRLPKVLDTDR 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           AL L+D  +     +  +I  R+ AIL L Y  GLR+SE  +L   ++      +++ GK
Sbjct: 116 ALQLLDGGV-----DDDFIARRDQAILELFYSSGLRLSELTNLDLDHLDLAAGLVQVLGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R++P+    R+A+  +Y L    +       +F   +G  ++P   +  ++     
Sbjct: 171 GGKARVLPVGRKAREALQAWYRLRG--IGNPRDRAVFITRQGNRISPQAVRLRVKAAGER 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRHSFA+H+L +  DLR++Q +LGH  +STTQIYT+++ ++    +  +
Sbjct: 229 -ELGQHLHPHMLRHSFASHVLESSQDLRAVQEMLGHADISTTQIYTHLDFQH----LAAV 283

Query: 314 YDQTHPSITQKD 325
           YD  HP   +  
Sbjct: 284 YDSAHPRAKRSK 295


>gi|223044229|ref|ZP_03614266.1| tyrosine recombinase XerC [Staphylococcus capitis SK14]
 gi|222442379|gb|EEE48487.1| tyrosine recombinase XerC [Staphylococcus capitis SK14]
          Length = 296

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 80/306 (26%), Positives = 147/306 (48%), Gaps = 16/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +L  L++ER  S+ TL+SY  D  QF  FL            +    Y + R ++S 
Sbjct: 5   QKTFLYMLKVERNFSEYTLKSYHDDLIQFNDFLVSEH------LDLATFEYKDARNYLSF 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             +  +   ++ R +S +++F +Y   +  +  +  + + + KK   LP+   E++   L
Sbjct: 59  LYSHNLKRTTVSRKISTLRTFYEYWMTQDESIVNPFVQLVHPKKEQYLPQFFYEEEMEAL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                  T  +      R+  I+ LLY  G+R+SE +++  ++I  +   +++ GKG+K 
Sbjct: 119 F-----QTVKQDSKKGIRDRVIIELLYATGIRVSELVNIKIKDIDMNLPGVKVLGKGNKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R +P     +++I  Y D        N    L   + G P+     +  +  + +     
Sbjct: 174 RFIPFGEFCKQSIERYLDE-FQPRKTNDHEYLIVNMNGAPITERGVRYVLNDVVKRTAGV 232

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++     + ++Y   
Sbjct: 233 TDIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQ----LRKVYLNA 288

Query: 318 HPSITQ 323
           HP   +
Sbjct: 289 HPRAKK 294


>gi|329962250|ref|ZP_08300256.1| putative tyrosine recombinase XerC [Bacteroides fluxus YIT 12057]
 gi|328530358|gb|EGF57235.1| putative tyrosine recombinase XerC [Bacteroides fluxus YIT 12057]
          Length = 294

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 76/303 (25%), Positives = 143/303 (47%), Gaps = 13/303 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L  L  ER  S+ T++ Y  D  +   F     +E +   T   +    +R +I+  
Sbjct: 5   DSFLDYLLYERNYSEGTVKYYRSDILELQDF----GKEMLGDLTPSDIDAELVREWIASL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     ++ R LS I+++ K+L +R       +  +   KK   LP  L E +   L+
Sbjct: 61  MDRGCASSTINRKLSSIRAYYKFLLRRGEVAVDPLRKITGPKKKKPLPVFLREGEMDKLL 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D     T     +   RN  I+ + Y  G+R+SE + L  +++    S +++ GK +K R
Sbjct: 121 D----DTDFGEGFEGCRNHLIIEMFYATGMRLSELIGLDDKDVDYSASLIKVTGKRNKQR 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++P    ++ ++ EY ++    + +      F    GK L   +    +++    +    
Sbjct: 177 LIPFDEELKFSMQEYVNVRNETIPVR-SDAFFVRENGKRLYRSIVAYLVKRNLSKVVTVK 235

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FAT +L+NG DL SI+ +LGH  L+TT++YT+   +     + ++Y+Q H
Sbjct: 236 KRSPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEE----LKKVYNQAH 291

Query: 319 PSI 321
           P  
Sbjct: 292 PRA 294


>gi|329956681|ref|ZP_08297254.1| putative tyrosine recombinase XerC [Bacteroides clarus YIT 12056]
 gi|328524053|gb|EGF51129.1| putative tyrosine recombinase XerC [Bacteroides clarus YIT 12056]
          Length = 294

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 75/303 (24%), Positives = 142/303 (46%), Gaps = 13/303 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L  L  ER  SK T++ Y  D  +   F     EE +   T   +    +R +I+  
Sbjct: 5   DSFLDYLLYERNYSKYTVEFYRTDILELQKF----GEELLGNLTPSDVDVELVREWIASL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S+ R LS I+++ KYL ++ +     +  +   +K   LP  L E +   L+
Sbjct: 61  MDRGYAFNSINRKLSSIRTYYKYLLRKGVVESDPLQKITRPRKKKPLPVFLRESEMNRLL 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D++         +   R+  I+ + Y  G+R+SE + L  +++    S +++ GK +K R
Sbjct: 121 DDIDF----GEGFEGCRDRMIVEMFYATGMRLSELVGLDDKDVDFLASLIKVVGKRNKQR 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++P    +R ++ EY +       +      F    G  +   +    +++    +    
Sbjct: 177 LIPFDEELRCSMQEYVNERNKSFPVR-SDAFFIRKNGGRITRSIVAYIVKRNLSKVVTVK 235

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FAT +L+NG DL SI+ +LGH  L+TT++YT+   +     + ++Y+Q H
Sbjct: 236 KRSPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHATFEE----LKKVYNQAH 291

Query: 319 PSI 321
           P  
Sbjct: 292 PRA 294


>gi|307823075|ref|ZP_07653305.1| tyrosine recombinase XerC [Methylobacter tundripaludum SV96]
 gi|307735850|gb|EFO06697.1| tyrosine recombinase XerC [Methylobacter tundripaludum SV96]
          Length = 302

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 91/307 (29%), Positives = 158/307 (51%), Gaps = 17/307 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++ + L +E   S+ T+++Y+ D +    +          I     L +T+IRA I+ R 
Sbjct: 11  DFFKQLTVEVRASEHTVKNYQRDLKHLSRYCTDKP-----ITRWADLKHTDIRAHIASRH 65

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +  +SL+R LS I+SF  YL K+  T  +   +++  K++  LP+ L+  Q   L++
Sbjct: 66  RKGLSSKSLQRELSAIRSFYNYLLKKGQTDVNPAQHIQAPKQARKLPKTLDVDQLSGLLE 125

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR 198
                 +  +  ++ R+ A+  L Y  GLR+SE  +L   ++    STL ++ GKG K R
Sbjct: 126 ------AGASSLLEIRDLAMFELFYSSGLRLSELSALDLTDLDLPDSTLTVRIGKGGKSR 179

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++P+      AI  +       +   I+  LF   RG  L     +  + +  +  G+  
Sbjct: 180 VLPVGSKAVTAIENWLQQRAVKIPA-IEPALFVSTRGTRLGQRNIELRLERWCKAKGIAE 238

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRHSFA+HLL +  DLR++Q +LGH  +STTQIYT+++ ++    + EIYD+ H
Sbjct: 239 HIHPHMLRHSFASHLLESSHDLRAVQELLGHSNISTTQIYTHLDFQH----LAEIYDKAH 294

Query: 319 PSITQKD 325
           P   +K 
Sbjct: 295 PRAKKKP 301


>gi|319781237|ref|YP_004140713.1| tyrosine recombinase XerD [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317167125|gb|ADV10663.1| tyrosine recombinase XerD [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 305

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 84/312 (26%), Positives = 132/312 (42%), Gaps = 20/312 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+ +  ERG ++ TL SY  D       +                     RA++  
Sbjct: 7   IEAFLEMMSAERGAAENTLSSYRRDLEDASGAIDGGLAGAAAADI---------RAYLDD 57

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S  R LS I+ F K+L    +  +     + + KK   LP+ ++E     L
Sbjct: 58  IAARGFAATSQARKLSAIRQFFKFLYAEGLRGDDPTGTLDSPKKGRPLPKTMSEADTGRL 117

Query: 138 VDNVLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +D   +                R  A++ +LY  GLR+SE + L       D     ++G
Sbjct: 118 IDRAAIEAGDVSSGDGDSLASLRLHALVEVLYATGLRVSELVGLPVTVAQRDDRFFMVRG 177

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLR 251
           KGDK R+VPL    R A+  +               LF        L+  VF R ++ L 
Sbjct: 178 KGDKERMVPLSAKARAAMKTWLAARAKVPAFADSPFLFPAASDSGYLSRQVFARDLKGLA 237

Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              G+     + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V  +     +
Sbjct: 238 ARAGIASAKISPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHVLEER----L 293

Query: 311 MEIYDQTHPSIT 322
           + + +  HP   
Sbjct: 294 VRLVNDHHPLAD 305


>gi|167036277|ref|YP_001671508.1| site-specific tyrosine recombinase XerC [Pseudomonas putida GB-1]
 gi|189030081|sp|B0KQ43|XERC_PSEPG RecName: Full=Tyrosine recombinase xerC
 gi|166862765|gb|ABZ01173.1| tyrosine recombinase XerC [Pseudomonas putida GB-1]
          Length = 299

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 82/312 (26%), Positives = 149/312 (47%), Gaps = 17/312 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++ + +  +L  ER +S+ TL  Y  D  + + +   +      I   + L   ++R 
Sbjct: 1   MERQLEAYCAHLRNERQVSEHTLLGYRRDLDKVIAYCKEH-----GIADWQALQIQQLRQ 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            I++        RSL R LS ++   +YL +  +        +   K    LP+ L+  +
Sbjct: 56  LIARLHHHGQSSRSLARLLSAVRGLYRYLNREGLCQHDPATGLSAPKGERRLPKVLDTDR 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           AL L+D  +     +  +I  R+ AIL L Y  GLR+SE  +L   ++      +++ GK
Sbjct: 116 ALQLLDGGV-----DDDFIARRDQAILELFYSSGLRLSELTNLDLDHLDLAAGLVQVLGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R++P+    R+A+  +Y L    +       +F   +G  ++P   +  ++     
Sbjct: 171 GGKARVLPVGRKAREALQAWYRLRG--IGNPRDRAVFITRQGNRISPQAVRLRVKAAGER 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRHSFA+H+L +  DLR++Q +LGH  +STTQIYT+++ ++    +  +
Sbjct: 229 -ELGQHLHPHMLRHSFASHVLESSQDLRAVQELLGHADISTTQIYTHLDFQH----LAAV 283

Query: 314 YDQTHPSITQKD 325
           YD  HP   +  
Sbjct: 284 YDSAHPRAKRSK 295


>gi|213158313|ref|YP_002320364.1| tyrosine recombinase XerC [Acinetobacter baumannii AB0057]
 gi|215482572|ref|YP_002324764.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294]
 gi|301594795|ref|ZP_07239803.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB059]
 gi|213057473|gb|ACJ42375.1| tyrosine recombinase XerC [Acinetobacter baumannii AB0057]
 gi|213986400|gb|ACJ56699.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294]
          Length = 304

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 90/306 (29%), Positives = 167/306 (54%), Gaps = 14/306 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+  +I+   S+ T+ +YE D R FL F       ++    +R +  +++R ++++R  
Sbjct: 11  WLKERKIQNQ-SEHTITAYERDVRSFLEFC------ELKKVDLRNVEASDLREYLAQRVE 63

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           Q ++   S++R L+ I+ F+K+ ++ K    +   + +  ++   LP  ++ +    ++D
Sbjct: 64  QDQLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILD 123

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             +     + + +  R+ A+L LLY  GLR++E   LT ++I  ++  +RI GKG+K RI
Sbjct: 124 QPMPEKPIDQQ-LWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRI 182

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP     ++++L +  +         Q   +F   RG  L P   ++ ++   +  G+ +
Sbjct: 183 VPFGKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNV 242

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRH FA+H+LS+ GDLRS+Q +LGH  LSTTQIYT+++     D + ++YDQ H
Sbjct: 243 DLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHLAQVYDQAH 298

Query: 319 PSITQK 324
           P  T+ 
Sbjct: 299 PRATKH 304


>gi|254824662|ref|ZP_05229663.1| integrase/recombinase XerC [Listeria monocytogenes FSL J1-194]
 gi|293593901|gb|EFG01662.1| integrase/recombinase XerC [Listeria monocytogenes FSL J1-194]
          Length = 300

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 81/308 (26%), Positives = 143/308 (46%), Gaps = 15/308 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q +   L  ER  S  T  +YE D   F  FL      +  I T +Q+++ ++R ++
Sbjct: 6   KLEQQFFDYLHSERNYSVNTSTAYENDLLDFRRFL-----NEQAITTYQQVTFLDVRIYL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++ + +     ++ R +S ++SF  +L +  +  E+    + + K    LP+    ++  
Sbjct: 61  TELKQKSFSRTTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEME 120

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L   V      + + +  R+  +L +LYG G+R+SE   +   ++      + I+GKG+
Sbjct: 121 ALFQVVY----EDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGN 176

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLN--LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R VP       AI +Y       ++        L     G PL     +  + ++   
Sbjct: 177 KERYVPFGVYAEDAITDYLPERANLMSHYKKSHDALLVNHYGDPLTTRGIRYCLSKIISK 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRH+FAT LL+NG D+R++Q +LGH  LS+TQIYT+V  ++    +   
Sbjct: 237 ASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----LKST 292

Query: 314 YDQTHPSI 321
           Y + HP  
Sbjct: 293 YMKHHPRA 300


>gi|325982877|ref|YP_004295279.1| tyrosine recombinase XerC [Nitrosomonas sp. AL212]
 gi|325532396|gb|ADZ27117.1| tyrosine recombinase XerC [Nitrosomonas sp. AL212]
          Length = 297

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 92/306 (30%), Positives = 154/306 (50%), Gaps = 19/306 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            ++ +L  ER LS LT +SY  D R  L        E +    + Q+    IR  I++  
Sbjct: 11  AYIDHLAYERRLSPLTCKSYARDIRVLL--------EHLGTDDLAQVQSPNIRQAIAQLH 62

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +G RSL R LS    F  +L ++     +    +R  K    LP AL+  +A  L+ 
Sbjct: 63  GKGLGGRSLARMLSAWCGFYNFLIRKHGFQHNPCYAVRVPKSPQKLPHALSPDEATRLLQ 122

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             + +       + AR+SA+  L Y  GLR++E   L P+++   + T+R+ GKG K RI
Sbjct: 123 FPVENI------LLARDSAMFELFYSSGLRLAELTHLRPEDVHFAEGTIRVLGKGGKARI 176

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VP+      +I  +  L    +  N+   LF   RG  ++       ++   R  GL  +
Sbjct: 177 VPVGEYALHSITTWLALRLQIIKPNV-TALFLSRRGDAISMRAIAYRLKSRARQQGLHQN 235

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRHSFA+H+L + GDLR++Q +LGH  +++TQ+YT+++ ++    + +IYD  HP
Sbjct: 236 VHPHVLRHSFASHVLQSSGDLRAVQEMLGHAHITSTQVYTHLDFQH----LAKIYDAAHP 291

Query: 320 SITQKD 325
              +++
Sbjct: 292 RAKKRN 297


>gi|124383411|ref|YP_001028462.1| site-specific tyrosine recombinase XerD [Burkholderia mallei NCTC
           10229]
 gi|254177062|ref|ZP_04883719.1| tyrosine recombinase XerD [Burkholderia mallei ATCC 10399]
 gi|254187507|ref|ZP_04894019.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pasteur 52237]
 gi|124291431|gb|ABN00700.1| tyrosine recombinase XerD [Burkholderia mallei NCTC 10229]
 gi|157935187|gb|EDO90857.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pasteur 52237]
 gi|160698103|gb|EDP88073.1| tyrosine recombinase XerD [Burkholderia mallei ATCC 10399]
          Length = 329

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 83/301 (27%), Positives = 136/301 (45%), Gaps = 17/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   + +E GLS+ TL +Y  D + F  +LA          ++   S   +  +I+ R  
Sbjct: 44  FCDAMWLEHGLSRNTLDAYRRDLQLFAQWLAARH-----AASVDHASEPTLTEYIAARSD 98

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            K    S  R LS  + +  +  +         L + + K++   P  L+E Q   L+  
Sbjct: 99  GK--ATSSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALL-- 154

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                      +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+V
Sbjct: 155 ---AAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLV 211

Query: 201 PLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P        I  Y     P  L       LF   RG  +    F   I++  +   + + 
Sbjct: 212 PFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVH 271

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++   HP
Sbjct: 272 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LKTLHAAHHP 327

Query: 320 S 320
            
Sbjct: 328 R 328


>gi|315282101|ref|ZP_07870587.1| tyrosine recombinase XerC [Listeria marthii FSL S4-120]
 gi|313614253|gb|EFR87911.1| tyrosine recombinase XerC [Listeria marthii FSL S4-120]
          Length = 300

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 82/308 (26%), Positives = 143/308 (46%), Gaps = 15/308 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q +L  L  ER  S  T  +YE D   F  FL      +  I   +Q+++ ++R ++
Sbjct: 6   KLEQQFLDYLHSERNYSVNTSTAYENDLLDFRRFL-----NEQAIMAYQQVTFLDVRIYL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++ + +     ++ R +S ++SF  +L +  + TE+    + + K    LP+    ++  
Sbjct: 61  TELKQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEME 120

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L   V      + + +  R+  +L +LYG G+R+SE   +   ++      + I+GKG+
Sbjct: 121 ALFQVVY----EDNETLTLRDRVLLEVLYGTGIRVSECAGILMPDLDTSYQAILIRGKGN 176

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R VP       AI +Y       +         L     G PL     +  + ++   
Sbjct: 177 KERYVPFGVYAEDAITDYLPSRTELMTRYKKSHDALLVNHYGDPLTTRGIRYCLTKIISK 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRH+FAT LL+NG D+R++Q +LGH  LS+TQIYT+V  ++    +   
Sbjct: 237 ASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----LKST 292

Query: 314 YDQTHPSI 321
           Y + HP  
Sbjct: 293 YMKHHPRA 300


>gi|254522819|ref|ZP_05134874.1| tyrosine recombinase XerD [Stenotrophomonas sp. SKA14]
 gi|219720410|gb|EED38935.1| tyrosine recombinase XerD [Stenotrophomonas sp. SKA14]
          Length = 325

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 92/326 (28%), Positives = 147/326 (45%), Gaps = 25/326 (7%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
             LPE+ + +  +  Q +L  +  E GL++ TL SY  D      ++         I+  
Sbjct: 15  QQLPELRADDGAR-IQRFLDAIWAENGLARATLDSYRRDLEGLARWMDGRDGGLAGIERP 73

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
                  +  +++ R       RS  R LS ++++     +R   +E     +   K   
Sbjct: 74  G------LFDYLAWRTRHGWSPRSNARLLSALRAYFADGVRRGERSEDPSALLDPPKLPR 127

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            LP+AL E Q   L     L      + +  R+ A+L L+Y  GLR+SE + L   ++  
Sbjct: 128 LLPKALAESQIDAL-----LAAPDVERPLGLRDRAMLELMYAAGLRVSELVLLPATSVNL 182

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN--------LNIQLPLFRGIRG 235
            Q  +R+ GKG K R+VPL    +  +  Y       L          + Q PLF     
Sbjct: 183 RQGVIRVTGKGSKERLVPLGEESQHWLERYLQQSRPQLVGKGRVQALADGQTPLFVEPTL 242

Query: 236 KPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
             L    F   +++  +  G+ P   + H LRHSFATHLL+ G DLR++Q +LGH  LST
Sbjct: 243 HALTRQAFWHLVKRHAQVAGIDPARISPHGLRHSFATHLLNRGADLRALQMLLGHSSLST 302

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPS 320
           TQIYT V  ++    + +++ + HP 
Sbjct: 303 TQIYTLVAREH----LQKLHARHHPR 324


>gi|254181547|ref|ZP_04888144.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1655]
 gi|254298194|ref|ZP_04965646.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e]
 gi|157808367|gb|EDO85537.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e]
 gi|184212085|gb|EDU09128.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1655]
          Length = 329

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 83/301 (27%), Positives = 136/301 (45%), Gaps = 17/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   + +E GLS+ TL +Y  D + F  +LA          ++   S   +  +I+ R  
Sbjct: 44  FCDAMWLEHGLSRNTLDAYRRDLQLFAQWLAARY-----AASVDHASEPTLTEYIAARSD 98

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            K    S  R LS  + +  +  +         L + + K++   P  L+E Q   L+  
Sbjct: 99  GK--ATSSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALL-- 154

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                      +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+V
Sbjct: 155 ---AAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLV 211

Query: 201 PLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P        I  Y     P  L       LF   RG  +    F   I++  +   + + 
Sbjct: 212 PFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVH 271

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++   HP
Sbjct: 272 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LKTLHAAHHP 327

Query: 320 S 320
            
Sbjct: 328 R 328


>gi|26991906|ref|NP_747331.1| site-specific tyrosine recombinase XerC [Pseudomonas putida KT2440]
 gi|34222832|sp|Q88CF1|XERC_PSEPK RecName: Full=Tyrosine recombinase xerC
 gi|24987029|gb|AAN70795.1|AE016723_7 integrase/recombinase XerC [Pseudomonas putida KT2440]
          Length = 299

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 83/312 (26%), Positives = 150/312 (48%), Gaps = 17/312 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++ + +  +L  ER +S+ T Q Y  D  + + +      E+  I   + L   ++R 
Sbjct: 1   MKRQLEAYCAHLRNERQVSEHTSQGYRRDLEKVIAYC-----EEHGIADWQALQIQQLRQ 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            I++        RSL R LS ++   +YL +  +        +   K    LP+ L+  +
Sbjct: 56  LIARLHHHGQSPRSLARLLSAVRGLYRYLNREGLCQHDPANGLSAPKGERRLPKVLDTDR 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           AL L+D  +     +  +I  R+ AIL L Y  GLR+SE  +L   ++      +++ GK
Sbjct: 116 ALQLLDGGV-----DDDFIARRDQAILELFYSSGLRLSELTNLDLDHLDLAAGLVQVLGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R++P+    R+A+  +Y L    +       +F   +G  ++P   +  ++     
Sbjct: 171 GGKARVLPVGRKAREALQAWYRLRG--IGNPRDRAVFITRQGNRISPRAVRLRVKVAGER 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRHSFA+H+L +  DLR++Q +LGH  +STTQIYT+++ ++    +  +
Sbjct: 229 -ELGQHLHPHMLRHSFASHVLESSQDLRAVQEMLGHADISTTQIYTHLDFQH----LAAV 283

Query: 314 YDQTHPSITQKD 325
           YD  HP   +  
Sbjct: 284 YDSAHPRAKRSK 295


>gi|293400524|ref|ZP_06644669.1| integrase/recombinase XerC [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305550|gb|EFE46794.1| integrase/recombinase XerC [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 305

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 90/312 (28%), Positives = 150/312 (48%), Gaps = 20/312 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L+     S  T  +Y+ D  +FL FL     +   I ++  +    +  ++S  R
Sbjct: 7   RFLDYLDTVNSGSAHTKDAYQRDITEFLDFL-----KSENIMSLDDVDRIIVMNYVSHLR 61

Query: 80  TQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
            +      + + ++ R LS ++S+ +YL +      +  L  +  K++  +P  L   + 
Sbjct: 62  ERDGRQGTMKNATVARKLSSLRSYYRYLNEYVGVQNNPFLYFKAPKQTRRIPEFLFYDEI 121

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
              + +  LH     + +D R+ A+  L+Y  GLR+SEA++L   +I    + L I GKG
Sbjct: 122 ALFLASFDLH-----EAVDVRDRALFELMYASGLRVSEAVNLRLSDIDFHDNILHIIGKG 176

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           DK R+VP     ++ +++Y   + P  +N      +F   +GKPL     Q  +    + 
Sbjct: 177 DKQRLVPFYDLAKERLVDYIEHVRPKWVNTLQHEYVFVNQKGKPLTSRGVQYRMELAAKK 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L L    H  RHSFATHLL NG DLR +Q +LGH  LSTTQIY +V      D +   
Sbjct: 237 CHLHLHIHPHMFRHSFATHLLDNGADLRVVQELLGHASLSTTQIYVHVTQ----DRLKSA 292

Query: 314 YDQTHPSITQKD 325
           Y+  HP   +++
Sbjct: 293 YEHAHPRAGKEN 304


>gi|167753897|ref|ZP_02426024.1| hypothetical protein ALIPUT_02182 [Alistipes putredinis DSM 17216]
 gi|167658522|gb|EDS02652.1| hypothetical protein ALIPUT_02182 [Alistipes putredinis DSM 17216]
          Length = 298

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 85/294 (28%), Positives = 142/294 (48%), Gaps = 12/294 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++   +++E+ LS+ T++SY  D RQF  F+  + +        R++    I  +++  
Sbjct: 13  RSYRVYIKLEKRLSENTVESYMRDLRQFAHFILRFYD-----VPPRKVEAPMIERYLALL 67

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S  R+LSGI+SF  YL    +   +    +   K    LP  L  ++   +V
Sbjct: 68  YDQGREKTSQARALSGIRSFYNYLMLTDVIDSTPTQFIDTPKFGRHLPDILTVEEIDRIV 127

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                     +     R+SA+L +LY CGLR+SE  SL   ++   +  +R+ GKGDK R
Sbjct: 128 -----AAVDTSTVKGRRDSAMLEVLYSCGLRVSELTSLRLGDLFFGEGYIRVTGKGDKQR 182

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VP+  + R+ I  Y D        +    +F   RG  L   +    +R+     G+  
Sbjct: 183 LVPVSGAAREKIQRYLDDR--ATKTSASDVVFLNNRGTQLTRVMVFTILREAVHRAGIDK 240

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             + HT RHSFATHLL  G  +R +Q +LGH  + TT+IYT++   +  D + +
Sbjct: 241 HISPHTFRHSFATHLLEGGASIRQVQEMLGHESILTTEIYTHLEGDHLRDTVEK 294


>gi|116328183|ref|YP_797903.1| tyrosine site-specific recombinase XerC [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116330907|ref|YP_800625.1| tyrosine site-specific recombinase XerC [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116120927|gb|ABJ78970.1| Tyrosine site-specific recombinase XerC [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116124596|gb|ABJ75867.1| Tyrosine site-specific recombinase XerC [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 311

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 79/319 (24%), Positives = 148/319 (46%), Gaps = 16/319 (5%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
            P+  S  L +  + ++  L+IE+  S+ T+ +Y  D + F  F             I Q
Sbjct: 8   FPKFPSSFLNETAEKFINYLKIEKNYSQNTINAYSIDLKFFFEFCEKEQ------LDILQ 61

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           +   +IR++ S   + Q +  RS  R LS +++F K L +      +    +   K    
Sbjct: 62  VEPVDIRSYFSYLAKEQDLDRRSQSRKLSSLRTFYKVLLRDDQIESNPATRISFPKVRKE 121

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           +P+     +   +++         ++ ++ R+ A++ +LY  GLR+ E ++    ++  D
Sbjct: 122 VPKNFRINETEEILE---FEAERTSEILEIRDKAMIEVLYSSGLRVFELVNAKLGSLSKD 178

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
            + L++ GKG K R V        ++  Y +     ++      +F   +GK L     +
Sbjct: 179 LTVLKVLGKGQKERFVYFGKEAVDSLRRYLEYRN--VSFPDVKEIFLNQKGKKLTTRGVR 236

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             + + R+ +G     T H  RH+FAT LL  G D+R++Q +LGH  LSTTQIY +V+ +
Sbjct: 237 YILNERRKKMGWEKKITPHKFRHTFATDLLDAGADIRAVQELLGHSSLSTTQIYLSVSKE 296

Query: 305 NGGDWMMEIYDQTHPSITQ 323
                + E+Y + HP   +
Sbjct: 297 ----KIKEVYRKAHPHARK 311


>gi|126438545|ref|YP_001057962.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           668]
 gi|126451016|ref|YP_001079697.1| site-specific tyrosine recombinase XerD [Burkholderia mallei NCTC
           10247]
 gi|134279602|ref|ZP_01766314.1| tyrosine recombinase XerD [Burkholderia pseudomallei 305]
 gi|166998458|ref|ZP_02264318.1| tyrosine recombinase XerD [Burkholderia mallei PRL-20]
 gi|167814554|ref|ZP_02446234.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           91]
 gi|167844587|ref|ZP_02470095.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           B7210]
 gi|167901578|ref|ZP_02488783.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           NCTC 13177]
 gi|217419758|ref|ZP_03451264.1| tyrosine recombinase XerD [Burkholderia pseudomallei 576]
 gi|254196593|ref|ZP_04903017.1| tyrosine recombinase XerD [Burkholderia pseudomallei S13]
 gi|254360098|ref|ZP_04976368.1| tyrosine recombinase XerD [Burkholderia mallei 2002721280]
 gi|52208916|emb|CAH34855.1| putative integrase/recombinase [Burkholderia pseudomallei K96243]
 gi|126218038|gb|ABN81544.1| tyrosine recombinase XerD [Burkholderia pseudomallei 668]
 gi|126243886|gb|ABO06979.1| tyrosine recombinase XerD [Burkholderia mallei NCTC 10247]
 gi|134248802|gb|EBA48884.1| tyrosine recombinase XerD [Burkholderia pseudomallei 305]
 gi|148029338|gb|EDK87243.1| tyrosine recombinase XerD [Burkholderia mallei 2002721280]
 gi|169653336|gb|EDS86029.1| tyrosine recombinase XerD [Burkholderia pseudomallei S13]
 gi|217397062|gb|EEC37078.1| tyrosine recombinase XerD [Burkholderia pseudomallei 576]
 gi|243065512|gb|EES47698.1| tyrosine recombinase XerD [Burkholderia mallei PRL-20]
          Length = 333

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 83/301 (27%), Positives = 136/301 (45%), Gaps = 17/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   + +E GLS+ TL +Y  D + F  +LA          ++   S   +  +I+ R  
Sbjct: 48  FCDAMWLEHGLSRNTLDAYRRDLQLFAQWLAARH-----AASVDHASEPTLTEYIAARSD 102

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            K    S  R LS  + +  +  +         L + + K++   P  L+E Q   L+  
Sbjct: 103 GK--ATSSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALL-- 158

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                      +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+V
Sbjct: 159 ---AAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLV 215

Query: 201 PLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P        I  Y     P  L       LF   RG  +    F   I++  +   + + 
Sbjct: 216 PFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVH 275

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++   HP
Sbjct: 276 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LKTLHAAHHP 331

Query: 320 S 320
            
Sbjct: 332 R 332


>gi|184159192|ref|YP_001847531.1| site-specific recombinase XerC [Acinetobacter baumannii ACICU]
 gi|332876021|ref|ZP_08443807.1| putative tyrosine recombinase XerC [Acinetobacter baumannii
           6014059]
 gi|183210786|gb|ACC58184.1| Site-specific recombinase XerC [Acinetobacter baumannii ACICU]
 gi|332735887|gb|EGJ66928.1| putative tyrosine recombinase XerC [Acinetobacter baumannii
           6014059]
          Length = 308

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 167/306 (54%), Gaps = 14/306 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+  +I+   S+ T+ +YE D + FL F       ++    +R +  +++R ++++R  
Sbjct: 15  WLKERKIQNQ-SEHTITAYERDVKSFLEFC------ELKKVDLRNVEASDLREYLAQRVE 67

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           Q ++   S++R L+ I+ F+K+ ++ K    +   + +  ++   LP  ++ +    ++D
Sbjct: 68  QDQLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILD 127

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             +     + + +  R+ A+L LLY  GLR++E   LT ++I  ++  +RI GKG+K RI
Sbjct: 128 QPMPEKPVDQQ-LWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRI 186

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP     ++++L +  +         Q   +F   RG  L P   ++ ++   +  G+ +
Sbjct: 187 VPFGKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNV 246

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRH FA+H+LS+ GDLRS+Q +LGH  LSTTQIYT+++     D + ++YDQ H
Sbjct: 247 DLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHLAQVYDQAH 302

Query: 319 PSITQK 324
           P  T+ 
Sbjct: 303 PRATKH 308


>gi|167893119|ref|ZP_02480521.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           7894]
 gi|167917844|ref|ZP_02504935.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           BCC215]
 gi|237811111|ref|YP_002895562.1| tyrosine recombinase XerD [Burkholderia pseudomallei MSHR346]
 gi|254296371|ref|ZP_04963828.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e]
 gi|157805883|gb|EDO83053.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e]
 gi|237504621|gb|ACQ96939.1| tyrosine recombinase XerD [Burkholderia pseudomallei MSHR346]
          Length = 333

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 83/301 (27%), Positives = 136/301 (45%), Gaps = 17/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   + +E GLS+ TL +Y  D + F  +LA          ++   S   +  +I+ R  
Sbjct: 48  FCDAMWLEHGLSRNTLDAYRRDLQLFAQWLAARY-----AASVDHASEPTLTEYIAARSD 102

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            K    S  R LS  + +  +  +         L + + K++   P  L+E Q   L+  
Sbjct: 103 GK--ATSSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALL-- 158

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                      +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+V
Sbjct: 159 ---AAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLV 215

Query: 201 PLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P        I  Y     P  L       LF   RG  +    F   I++  +   + + 
Sbjct: 216 PFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVH 275

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++   HP
Sbjct: 276 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LKTLHAAHHP 331

Query: 320 S 320
            
Sbjct: 332 R 332


>gi|297242743|ref|ZP_06926681.1| site-specific recombinase XerD [Gardnerella vaginalis AMD]
 gi|296888954|gb|EFH27688.1| site-specific recombinase XerD [Gardnerella vaginalis AMD]
          Length = 322

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 86/320 (26%), Positives = 156/320 (48%), Gaps = 19/320 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +  + +    +++  +   +GL + T ++Y  D  Q L +   +         I +L+  
Sbjct: 14  LPSKYMSLIDDYIDYVRANKGLGERTQKAYASDILQCLAWCNRH-----GFNNISELTTD 68

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++R++++   ++     SL R +  ++ F  + +  +  + +    +   K  N LP  L
Sbjct: 69  DLRSWMAD-ESRSHARSSLARKVVAVRGFFAWCQHVEYISSNPAEILMTPKIKNMLPSVL 127

Query: 130 NEKQALTLVDNVLLHT------SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           +E QA +L++NV          +   K +  RN+AIL LLY  G+R+ E  SL  Q+I  
Sbjct: 128 DEYQAESLMNNVDSKANVSSSCTKNQKAVGLRNAAILELLYATGIRVGELTSLNIQDINF 187

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL--CPFDLNLNIQLPLFRGIRGKPLNPG 241
              T+++ GKG+K R+VP      KA+  +         L  +++   F G RGK ++  
Sbjct: 188 SSHTIKVTGKGNKQRVVPFGVPAYKALSAWISKDGREILLRNSVEEAAFLGTRGKRIDQR 247

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + +R +    +   +P   + H LRHS ATH+L+ G DLR +Q +LGH  L+TTQ YT+V
Sbjct: 248 LVRRIVHDEAKSAHVP-DISPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTHV 306

Query: 302 NSKNGGDWMMEIYDQTHPSI 321
           + ++    +   Y Q  P  
Sbjct: 307 SIES----LKRKYSQAFPRA 322


>gi|239500991|ref|ZP_04660301.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB900]
          Length = 304

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 90/306 (29%), Positives = 167/306 (54%), Gaps = 14/306 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+  +I+   S+ T+ +YE D R FL F       ++    +R +  +++R ++++R  
Sbjct: 11  WLKERKIQNQ-SEHTITAYERDVRSFLEFC------ELKKVDLRNVEASDLREYLAQRVE 63

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           Q ++   S++R L+ I+ F+K+ ++ K    +   + +  ++   LP  ++ +    ++D
Sbjct: 64  QDQLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILD 123

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             +     + + +  R+ A+L LLY  GLR++E   LT ++I  ++  +RI GKG+K RI
Sbjct: 124 QPMPEKPVDQQ-LWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRI 182

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP     ++++L +  +         Q   +F   RG  L P   ++ ++   +  G+ +
Sbjct: 183 VPFGKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGSALTPRQIEKRVKLQAQRAGVNV 242

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRH FA+H+LS+ GDLRS+Q +LGH  LSTTQIYT+++     D + ++YDQ H
Sbjct: 243 DLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHLAQVYDQAH 298

Query: 319 PSITQK 324
           P  T+ 
Sbjct: 299 PRATKH 304


>gi|160883082|ref|ZP_02064085.1| hypothetical protein BACOVA_01050 [Bacteroides ovatus ATCC 8483]
 gi|156111554|gb|EDO13299.1| hypothetical protein BACOVA_01050 [Bacteroides ovatus ATCC 8483]
          Length = 293

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 75/304 (24%), Positives = 145/304 (47%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L  L+ ER  S+ T+ +Y  D +Q   F     +E+       ++    IR +I  
Sbjct: 3   IESFLDYLQYERNYSEKTVLAYGEDIKQLQEF----AQEEYGKFNPLEVEAELIREWIVS 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S+ R LS +++F KYL ++  TT   +  ++  K    LP  L E +   L
Sbjct: 59  LMDKGYTSTSVNRKLSSLRTFYKYLLRQGETTIDPLRKIKGPKNKKPLPVFLKENEMNRL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D     T     +   R+  I+ + Y  G+R+SE + L  +++    S L++ GK +K 
Sbjct: 119 LD----ETDFGEGFKGCRDRLIIEVFYATGMRLSELIGLDNKDVDFSASLLKVTGKRNKQ 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R++P    +++ +LEY ++    +    +   F    G+ L   +    +++    +   
Sbjct: 175 RLIPFGDELQELMLEYINVRNETIPERSE-AFFIRENGERLYKNLVYNLVKRNLSKVATL 233

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FAT +L+N  +L  ++ +LGH  ++TT+IYT+   +     + ++Y Q 
Sbjct: 234 KKKSPHVLRHTFATTMLNNEAELGVVKELLGHESITTTEIYTHATFEE----LKKVYKQA 289

Query: 318 HPSI 321
           HP  
Sbjct: 290 HPRA 293


>gi|312135537|ref|YP_004002875.1| tyrosine recombinase xerd [Caldicellulosiruptor owensensis OL]
 gi|311775588|gb|ADQ05075.1| tyrosine recombinase XerD [Caldicellulosiruptor owensensis OL]
          Length = 291

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 75/308 (24%), Positives = 140/308 (45%), Gaps = 18/308 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +   + +  +L+ +   S+ T+ SY  D ++++ FL     +      +   S   + A+
Sbjct: 1   MSIVEAFCDHLQRQNRFSQNTISSYLRDAKKYIEFLDNMKIK------LENTSQATLIAY 54

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I   +     + ++ R++  +K F  +LK +KI     I  +   K   + P+ L   + 
Sbjct: 55  IISMQKSGKSNSTIARAIVSLKVFYDFLKTQKIIDIGKIE-IEPPKLEKNPPQILTRDEV 113

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+         E      R+ A+L LLY  G+++SE ++L   +I  +   +  + K 
Sbjct: 114 EKLL-----SCPKEDDIKGIRDKAMLELLYATGIKVSELINLNLDDINLEHGYIICKNKK 168

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
              R++P+      A+ +Y     P+      +  LF    G+ +    F + ++   + 
Sbjct: 169 R-DRVIPIGSYAISAVEKYLRYSRPYLAKSKDEEALFLNFNGERMTRQGFWKIVKFYAQS 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    T H LRHSFATHL+ NG D+R++Q +LGH  +STTQ Y  V +      + E+
Sbjct: 228 AEIDKEITPHVLRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVAN----VKLKEV 283

Query: 314 YDQTHPSI 321
           Y +THP  
Sbjct: 284 YQKTHPRA 291


>gi|149913845|ref|ZP_01902377.1| tyrosine recombinase XerD [Roseobacter sp. AzwK-3b]
 gi|149812129|gb|EDM71960.1| tyrosine recombinase XerD [Roseobacter sp. AzwK-3b]
          Length = 323

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 94/317 (29%), Positives = 154/317 (48%), Gaps = 20/317 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+    E G ++ TLQ+Y  D   F  +LA          TI Q   + + A++    
Sbjct: 10  AFLEAQAAELGAAQNTLQAYARDLSDFDAWLASQG------DTIEQADQSRVEAYLVHCD 63

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q +   +  R LS IK   ++  + ++  ++  + ++   +S  LP+ L+EK+   L+ 
Sbjct: 64  AQGLARATRARRLSAIKQLYRFAFEERLRDDNPAITIKGPGRSRKLPKTLSEKEVDLLLG 123

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
               H    T  +  RN+ ++ LLY  G+R+SE ++L       +   L I+GKG K R+
Sbjct: 124 AARTHGRSATDRV--RNTCLMELLYATGMRVSELVALPVAAARGNPQMLLIRGKGGKERM 181

Query: 200 VPLLPSVRKAILEYYDLCPFDL------NLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRR 252
           VPL P  R  ++E+  L                  LF    +   L    F   I++L  
Sbjct: 182 VPLSPDARDVMVEWLKLRDAADAAARKAGKPGSPFLFPSSGKIGHLTRHRFYMLIKELAV 241

Query: 253 YLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             G+ P   T HTLRH+FATHLL+NG DLR+IQ++LGH  ++TT+IYT+V  +     + 
Sbjct: 242 AGGVSPDKVTPHTLRHAFATHLLANGADLRAIQTLLGHADVATTEIYTHVLEER----LR 297

Query: 312 EIYDQTHPSITQKDKKN 328
           E+  + HP      +K+
Sbjct: 298 ELVQEHHPLAVASRRKS 314


>gi|295675162|ref|YP_003603686.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1002]
 gi|295435005|gb|ADG14175.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1002]
          Length = 307

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 81/321 (25%), Positives = 153/321 (47%), Gaps = 29/321 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                +L +LE ER LS+ TL+ Y  +  +  +            + +  L+  +IR  +
Sbjct: 5   DPIAAYLSHLEHERRLSEHTLRGYTHELAELKLLAKG--------RPLESLTAVDIRGAV 56

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++     +  RS+   LS  ++F ++L        + +  +R  K++ +LP+AL+     
Sbjct: 57  ARAHAGGLTARSIGHRLSAWRAFYRWLAGHVELPANPVAAVRAPKQAKTLPKALSVDDTA 116

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-----------DD 184
            L+D+    +         R+ A+L L Y  GLR++E + L  +               D
Sbjct: 117 RLMDSPPADSPE-----GLRDHAMLELFYSSGLRLAELVGLDVRFADVDGYRSAGWLKLD 171

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
              + + GKG++ R+VP+      A+  +  +    +  +   PLF   RG  L+P V +
Sbjct: 172 SGEVEVLGKGNRRRVVPVGSKAVAALNAWLAVRERMVRHDPH-PLFLSARGNRLSPNVVR 230

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  ++ TQ+YT ++ +
Sbjct: 231 ERVKRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTGLDFQ 290

Query: 305 NGGDWMMEIYDQTHPSITQKD 325
           +    +  +YD  HP   +++
Sbjct: 291 H----LAHVYDSAHPRAKKRN 307


>gi|262369523|ref|ZP_06062851.1| site-specific tyrosine recombinase [Acinetobacter johnsonii SH046]
 gi|262315591|gb|EEY96630.1| site-specific tyrosine recombinase [Acinetobacter johnsonii SH046]
          Length = 308

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 102/319 (31%), Positives = 174/319 (54%), Gaps = 14/319 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++FE ++    WL+  EI+   S  TLQ+YE D   FL+F      E      +  +  T
Sbjct: 1   MTFEPMQLLAMWLKQREIQNQ-SAHTLQAYERDVSDFLLFCEQKKLE------LGDVEAT 53

Query: 70  EIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           ++R FI+++   Q++   SL+R LS I+ F+K+ ++ +    +   + +  +K   LP  
Sbjct: 54  DLREFIAQKVEYQQLSSSSLQRMLSSIRQFMKWAEQGQHLAFNPADDFQLKRKPRPLPGL 113

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++ +    ++D  L     E + +  R+ A+L LLY  GLR++E   L  ++I  ++  L
Sbjct: 114 VDIETINQILDQALPEKEVEQQ-MWYRDKALLELLYSSGLRLAEVQGLRIKDIDFNRQLL 172

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           RI GKG+K R+VP     + A++++  + P ++ +      +F   +G PL     +  +
Sbjct: 173 RITGKGNKTRVVPFGSKAKDAVMKWLSIYPLWNGDFVPDAQVFITQKGNPLGMRQIENRV 232

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +   +  G+ +    H LRH FA+H+LSN GDLR++Q +LGH  LSTTQIYT+V+     
Sbjct: 233 KFQAQRAGVNIDLHPHLLRHCFASHMLSNSGDLRAVQEMLGHSNLSTTQIYTHVDF---- 288

Query: 308 DWMMEIYDQTHPSITQKDK 326
           D + ++YDQTHP   QK K
Sbjct: 289 DRLAQVYDQTHPRAQQKVK 307


>gi|332297603|ref|YP_004439525.1| Tyrosine recombinase xerC [Treponema brennaborense DSM 12168]
 gi|332180706|gb|AEE16394.1| Tyrosine recombinase xerC [Treponema brennaborense DSM 12168]
          Length = 308

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 76/311 (24%), Positives = 137/311 (44%), Gaps = 15/311 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
               L +  + +L      R L+  T+  Y  D  +    L   +        +  ++ T
Sbjct: 4   APATLQEACEEFLLYESSVRNLALNTIAGYRNDLARLCRLLGGAS------LPLTSVTVT 57

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++R  I +   +K    S+ R ++ ++S   Y ++ +    +    +  +K+   LPR +
Sbjct: 58  DLRFCIGELSRKKSAASSVNRFIAAVRSLFAYCRRFEYIKSNPATELHTVKQPRHLPRFM 117

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            E +   L          +T     R++AI  +LY  G R+SE  SL   +   D  +  
Sbjct: 118 TESEVDALCS----QPERKTLLWQTRDTAIFEMLYSSGCRVSELASLRLSDFSADFRSAV 173

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIR 248
           + GKG K R V       KA+  Y       +  N  +  +F  ++G PL     +  + 
Sbjct: 174 VTGKGGKDRRVFFSEQAGKALAGYLRERAARIPKNRTVSAVFINMQGTPLTTRGIRYIVS 233

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     G     + H  RH+FAT +LS+G D+R +Q +LGH  +STTQ YT++ ++    
Sbjct: 234 RYSGLEGTDKPVSPHAFRHTFATSMLSHGADVRVVQELLGHSSISTTQRYTHITTEQ--- 290

Query: 309 WMMEIYDQTHP 319
            ++EIY++ HP
Sbjct: 291 -LIEIYNRAHP 300


>gi|171320434|ref|ZP_02909468.1| tyrosine recombinase XerD [Burkholderia ambifaria MEX-5]
 gi|171094319|gb|EDT39392.1| tyrosine recombinase XerD [Burkholderia ambifaria MEX-5]
          Length = 320

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 89/316 (28%), Positives = 140/316 (44%), Gaps = 20/316 (6%)

Query: 9   IVSFELLKERQN---WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
             S  LL  R +   +   L +E GL++ TL +Y  D   F  +LA   +       +  
Sbjct: 20  AASPALLASRASIDVFCDALWLEHGLARNTLDAYRRDLVLFSQWLAATHD-----VPLDS 74

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
                +  +I+ R   K    S  R LS  + +  +  +    +    L + + K++   
Sbjct: 75  ADEAMLIGYIAARSDGK--ATSSNRRLSVFRRYYGWAVREHHASADPTLRITSAKQAARF 132

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P  L+E Q   L     L        +  R+  +L L+Y  GLR+SE ++L    +  ++
Sbjct: 133 PSTLSEAQVEAL-----LGAPDIGTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNE 187

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
             +R+ GKG K R+VP        I  Y     P  L       LF   RG  +    F 
Sbjct: 188 GVVRVMGKGSKERLVPFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFW 247

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             I++  R   +    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +
Sbjct: 248 NIIKRHARQADVRAHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARE 307

Query: 305 NGGDWMMEIYDQTHPS 320
                +  ++ Q HP 
Sbjct: 308 R----LRTLHAQHHPR 319


>gi|91776681|ref|YP_546437.1| tyrosine recombinase XerD [Methylobacillus flagellatus KT]
 gi|91710668|gb|ABE50596.1| Tyrosine recombinase XerD [Methylobacillus flagellatus KT]
          Length = 277

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 84/290 (28%), Positives = 139/290 (47%), Gaps = 16/290 (5%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           +K TL SY  D   F  +L            + +    +I+ FI+ R  Q    RS+ R 
Sbjct: 2   AKNTLTSYRQDLAAFAAWLQQTRRR-----AMLEAGPEDIQGFIAFRFPQS-QPRSISRL 55

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           ++ ++ F ++  +    +    +++ + K   SLP++L+E +   L+     +       
Sbjct: 56  VASLRRFYRFALRESYISADPSIHIESPKLPRSLPKSLSEDEVERLI-----NAPDTNTN 110

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           +  R+ A+L  LY  GLR+SE + +    +      +RI GKG K R+VPL     + + 
Sbjct: 111 LGLRDRAMLETLYATGLRVSELVGMHVTELSLTDGVVRITGKGSKTRLVPLGEQAVEWLA 170

Query: 212 EYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            Y     P  L   +   LF   RG+ +    F   I++     G+  S + H LRH+FA
Sbjct: 171 RYLQEGRPSILQQRLSDHLFVTQRGEGMTRQAFWYLIKRYAAIAGIQASLSPHVLRHAFA 230

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           THLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++ Q HP 
Sbjct: 231 THLLNHGADLRVVQMLLGHADISTTQIYTHVARER----LKRLHQQHHPR 276


>gi|239636270|ref|ZP_04677272.1| tyrosine recombinase XerC [Staphylococcus warneri L37603]
 gi|239597625|gb|EEQ80120.1| tyrosine recombinase XerC [Staphylococcus warneri L37603]
          Length = 297

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 79/309 (25%), Positives = 152/309 (49%), Gaps = 16/309 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +L  L++ER  S  TL+SY  D  QF  FL   +        +    Y + R ++S 
Sbjct: 5   QKAFLYMLKVERHFSDHTLKSYHDDIVQFNDFLYQES------LDLNDFEYKDARNYLSF 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             ++ +   ++ R +S +++F +Y   +  +  +  + + + KK   LP+   E++   L
Sbjct: 59  LYSKNLKRTTVSRKISTLRTFYEYWMTQDESVVNPFVQLVHPKKEQYLPQFFYEEEMEAL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                  T         R+  IL LLY  G+R+SE + +  Q++      +++ GKG+K 
Sbjct: 119 F-----KTVDTDSKKGMRDKVILELLYATGIRVSELVHIKTQDLDMKLPGVKVLGKGNKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R +P     +++I  Y        +++    L   ++G+P+     +  +  + +     
Sbjct: 174 RFIPFGEFCKQSIERYLKEFKPLKHVD-HDYLIVNMQGQPITERGVRYVLNDVVKRTSGV 232

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            +   H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++     + ++Y   
Sbjct: 233 TNIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ----LRKVYLNA 288

Query: 318 HPSITQKDK 326
           HP   ++++
Sbjct: 289 HPRAKKENE 297


>gi|300812249|ref|ZP_07092687.1| tyrosine recombinase XerC [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496763|gb|EFK31847.1| tyrosine recombinase XerC [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|325686014|gb|EGD28073.1| site-specific tyrosine recombinase XerC [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 295

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L+ ER  S  T+ +Y+ D      F     +E        Q+S  ++  ++   
Sbjct: 5   EQFLSYLKNERSYSPKTVLAYQKDLAAAKKFW----QENGGFPGWDQISRRDLEIYLLA- 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             QK+   +L R LS +KSF + L +R +      + ++  +    LP    + +   ++
Sbjct: 60  TGQKLASSTLSRKLSSLKSFYRLLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQVI 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                 + ++ K +  RN AI+ L Y  G+R+SE   L  + +  +   + + GKG+K R
Sbjct: 120 -----RSLNDGKPLTVRNRAIVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDR 174

Query: 199 IVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            V      +K + EY       L  N      +F    G+P++     + ++Q+ +  GL
Sbjct: 175 YVFFDQESKKYLEEYLQAARPSLLKNEPDTGAVFLNKLGRPISSRGIAKAVQQIFQKAGL 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V+ ++    +   Y Q
Sbjct: 235 TAGAHPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQH----LTAEYRQ 290

Query: 317 THPS 320
             P 
Sbjct: 291 HFPR 294


>gi|120609495|ref|YP_969173.1| phage integrase family protein [Acidovorax citrulli AAC00-1]
 gi|120587959|gb|ABM31399.1| phage integrase family protein [Acidovorax citrulli AAC00-1]
          Length = 326

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 86/323 (26%), Positives = 149/323 (46%), Gaps = 26/323 (8%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E   +L+++ +E+ L++ T+  Y  D  +                 + QL    IR F++
Sbjct: 14  EVLRYLEHVRVEKRLAERTVTLYTLDLAKLAASARDAG------VPLLQLQTAHIRRFVA 67

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           +        R +   LSG + F  +  ++ +   + +  +R  +    LP+AL    A+ 
Sbjct: 68  QMHAGGRSGRGIALILSGWRGFFAWAARQGLVPHNPVQGVRAPRAPKPLPKALGVDDAVR 127

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT-----------PQNIMDDQ 185
           L +     +S    W++AR++A++ LLYGCGLR+ E   L               I  + 
Sbjct: 128 LAE--FEGSSGSDPWLEARDAAMVELLYGCGLRVGELAGLDAVPGPDTQRQGRGWIDLEA 185

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIRGKPLNPGV 242
           +   + GKG K R VP+  +   A+  + ++           +   LF G RG  L    
Sbjct: 186 AEAHVFGKGSKRRSVPVGSAALAALRAWLEVRLQPFGAASGRVDAALFLGRRGARLTGQS 245

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               +RQ  +  GL      H LRHSFA+HLL + GDLR++Q +LGH  ++TTQ+YT ++
Sbjct: 246 IWSRLRQRSQLAGLSTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTRLD 305

Query: 303 SKNGGDWMMEIYDQTHPSITQKD 325
            ++    + ++YD  HP   +K 
Sbjct: 306 FQH----LAKVYDAAHPRARRKP 324


>gi|121595977|ref|YP_987873.1| tyrosine recombinase XerC [Acidovorax sp. JS42]
 gi|120608057|gb|ABM43797.1| tyrosine recombinase XerC [Acidovorax sp. JS42]
          Length = 323

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 89/332 (26%), Positives = 152/332 (45%), Gaps = 28/332 (8%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
            V+  L  E   +L+++ +E+ L+  TL  Y  D ++     A           + +L+ 
Sbjct: 5   PVALHLPPEALQYLEHVRVEKRLAARTLTLYTLDLQRLAAMAAGVD------LPLLRLTS 58

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             IR F+++        R +   LSG + F  +  ++ +   + + ++R  K    LP+A
Sbjct: 59  AHIRRFVAQMHAGGRSGRGIALILSGWRGFYTWAARQGLVPHNPVQDVRAPKAPKPLPKA 118

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP---------- 178
           L   +A+ L ++          W++ R++AI+ LLYGCGLR+ E + L            
Sbjct: 119 LPVDEAVRLAEHQETGA---DPWLETRDAAIVELLYGCGLRVGELVGLDVAPSPAAHQQG 175

Query: 179 -QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGI 233
              +        + GKG K R VP+  +   A+  +       L       ++  LF G 
Sbjct: 176 RGWVDLQAGEAHVFGKGSKRRSVPVGRAAAAALQAWLAQRALPLGAAGAARLEPALFIGR 235

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           RG  L        +RQ  +  GL      H LRHSFA+HLL + GDLR++Q +LGH  ++
Sbjct: 236 RGARLTAQSVWSRLRQRSQVAGLTTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANIT 295

Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           TTQ+YT ++ ++    +  +YD  HP   +K 
Sbjct: 296 TTQVYTRLDFQH----LARVYDAAHPRARRKP 323


>gi|313638152|gb|EFS03409.1| tyrosine recombinase XerC [Listeria seeligeri FSL S4-171]
          Length = 300

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 84/308 (27%), Positives = 145/308 (47%), Gaps = 15/308 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q +L  L  ER  S+ T  +YE D   F  FL      +  I    Q+++ ++R ++
Sbjct: 6   KWEQLFLDYLHSERNYSENTSTAYENDLIDFRRFL-----NEQAITEYSQVTFLDVRIYL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++ + +     ++ R +S ++SF  +L +  + TE+    + + K    LP+    ++  
Sbjct: 61  TELKQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEME 120

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L   V      + + +  R+  +L +LYG G+R+SE   +   +I      + I+GKG+
Sbjct: 121 ALFQVVY----EDNETLTLRDRVLLEVLYGTGIRVSECAGILLTDIDKTYQAILIRGKGN 176

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R VP       AI +Y D     +         L     G+PL     +  + ++   
Sbjct: 177 KERYVPFGAYAEDAITDYLDSRIELMKHFNKTHDSLLINHYGEPLTTRGIRYCLTKIISK 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRH+FAT LL+NG D+R++Q +LGH  LS+TQIYT+V  ++    +   
Sbjct: 237 ASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----LKST 292

Query: 314 YDQTHPSI 321
           Y + HP  
Sbjct: 293 YMKHHPRA 300


>gi|270294768|ref|ZP_06200969.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274015|gb|EFA19876.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 294

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 75/303 (24%), Positives = 145/303 (47%), Gaps = 13/303 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L  L  ER  SK T++ Y  D  +   F     EE +   T   +    +R +I+  
Sbjct: 5   DSFLDYLLHERNYSKGTVEYYRADILELQRF----GEEMLGDLTPSDVDAELVREWIASL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   ++ R LS ++++ K+L +R       +  +   KK   LP  L E +   L+
Sbjct: 61  MDKGLASNTINRKLSSVRTYYKFLLRRGKVAVDPLRKVTGPKKKKPLPVFLREGEMNRLL 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D++         +   R+  I+ + Y  G+R+SE + L  +++    S +++ GK +K R
Sbjct: 121 DDMDF----GEGFEGCRDHMIIEMFYATGMRLSELIGLDDKDVDFSASLVKVTGKRNKQR 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++P    + +++ EY ++    + +      F    GK L   +    +++    +    
Sbjct: 177 LIPFDEELGRSMREYVNVRNEAVPVR-SDAFFVRKNGKRLYRSIVACLVKRNLSKVVTVK 235

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FAT +L+NG DL SI+ +LGH  L+TT++YT+   +     + ++Y+Q H
Sbjct: 236 KRSPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEE----LKKVYNQAH 291

Query: 319 PSI 321
           P  
Sbjct: 292 PRA 294


>gi|289434561|ref|YP_003464433.1| integrase/recombinase XerC [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170805|emb|CBH27347.1| integrase/recombinase XerC [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 300

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 84/308 (27%), Positives = 144/308 (46%), Gaps = 15/308 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q +L  L  ER  S+ T  +YE D   F  FL      +  I    Q+++ ++R ++
Sbjct: 6   KWEQLFLDYLHSERNYSENTSTAYENDLIDFRRFL-----NEQAITEYNQVTFLDVRIYL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++ + +     ++ R +S ++SF  +L +  + TE+    + + K    LP+    ++  
Sbjct: 61  TELKQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEME 120

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L   V      + + +  R+  +L +LYG G+R+SE   +   +I      + I+GKG+
Sbjct: 121 ALFQVVY----EDNETLTLRDRVLLEVLYGTGIRVSECAGILLTDIDKTYQAILIRGKGN 176

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R VP       AI +Y D     +         L     G PL     +  + ++   
Sbjct: 177 KERYVPFGAYAEDAITDYLDSRIELMKHFNKTHDSLLINHYGDPLTTRGIRYCLTKIISK 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRH+FAT LL+NG D+R++Q +LGH  LS+TQIYT+V  ++    +   
Sbjct: 237 ASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----LKST 292

Query: 314 YDQTHPSI 321
           Y + HP  
Sbjct: 293 YMKHHPRA 300


>gi|323339878|ref|ZP_08080147.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644]
 gi|323092751|gb|EFZ35354.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644]
          Length = 302

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 78/309 (25%), Positives = 142/309 (45%), Gaps = 16/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + + Q L++ER  S+ T+ SY  D  +F  FL    +E   +++ + ++  ++ A++
Sbjct: 7   EWLEQFKQYLKVERQYSEATITSYFEDLNEFCRFL----DESGGLKSFKDINNIDVHAYM 62

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           S    +++   ++ R +S +++F ++L +     +     +   +    LP    E++  
Sbjct: 63  SWLYDRELKTTTVSRKISSLRAFYRFLVRNDKADQDPFAYVSLRRHPRRLPHFFYEREMN 122

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L              +  R++A+L  LY  G+R+SE + L  Q+I     ++ + GKG 
Sbjct: 123 ALF-----QAVCGDDPLTVRDNALLENLYSTGMRVSECVGLKMQDIDFPMRSILVHGKGK 177

Query: 196 KIRIVPLLPS---VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K R V          KA  E       +        +F    G  L P      + ++  
Sbjct: 178 KDRYVQFGSYLDNALKAYFEKMRTPVMEKYQKKHDFVFVNHYGDQLTPAGVSYILDKIVE 237

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L  +   H LRH+FATH+L+NG DLRS+Q +LGH  +STTQIYT+V  ++    +  
Sbjct: 238 KSSLTTTIHPHELRHTFATHMLANGADLRSVQELLGHSSISTTQIYTHVTPEH----LKR 293

Query: 313 IYDQTHPSI 321
            Y +  P  
Sbjct: 294 DYRKFFPRA 302


>gi|62184944|ref|YP_219729.1| site-specific tyrosine recombinase XerC [Chlamydophila abortus
           S26/3]
 gi|81312884|sp|Q5L6G3|XERC_CHLAB RecName: Full=Tyrosine recombinase xerC
 gi|62148011|emb|CAH63762.1| putative integrase/recombinase [Chlamydophila abortus S26/3]
          Length = 312

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 91/319 (28%), Positives = 146/319 (45%), Gaps = 22/319 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-------------EKITI 60
           ++     +L  L+  +  S  TL++Y  D   F  FL  + E              +   
Sbjct: 1   MVSAFYAFLDYLKNIKTASPHTLRNYCIDLNSFKTFLEKHGELTPSPPICLLTKERQEAE 60

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
                L+   +R +I K   +    R++KR LS IKSF +Y  K++I  +     ++  +
Sbjct: 61  LPFSLLTKDTVRLYILKLMQENKAKRTIKRRLSAIKSFSQYCVKQRILPDDPTETIQGPR 120

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LP  +  +Q   L+      T   +K+   R+  +L L Y  GLRISE +++   +
Sbjct: 121 LPKELPSPITYEQVEILM-----ATPDLSKYTGLRDRCLLELFYSSGLRISEIVAINHWD 175

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I      +RI+GKG K R+VP+ P   + +  Y               +F    GK L  
Sbjct: 176 IDFTSHLIRIRGKGKKERLVPITPHAAQWLQHYLTHPARTSIEKDAQAIFLNRFGKRLTT 235

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               R  ++  R  GL    T HT+RH+ ATH L NG DL++IQ++LGH  L TT IYT+
Sbjct: 236 RSIDRKFQKYLRQSGLSGHITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTH 295

Query: 301 VNSKNGGDWMMEIYDQTHP 319
           V+ K       + ++++HP
Sbjct: 296 VSMKLK----KQTHNESHP 310


>gi|126455125|ref|YP_001065195.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           1106a]
 gi|167737435|ref|ZP_02410209.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           14]
 gi|167823028|ref|ZP_02454499.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           9]
 gi|167909818|ref|ZP_02496909.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           112]
 gi|226192850|ref|ZP_03788463.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pakistan 9]
 gi|242316366|ref|ZP_04815382.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1106b]
 gi|126228767|gb|ABN92307.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1106a]
 gi|225935100|gb|EEH31074.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pakistan 9]
 gi|242139605|gb|EES26007.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1106b]
          Length = 333

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 84/301 (27%), Positives = 136/301 (45%), Gaps = 17/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   + +E GLS+ TL +Y  D + F  +LA          ++   S   +  +I+ R  
Sbjct: 48  FCDAMWLEHGLSRNTLDAYRRDLQLFAQWLAARH-----AASVDHASEPTLTEYIAARSD 102

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            K    S  R LS  + +  +  +         L + + K++   P  L+E Q   L   
Sbjct: 103 GK--ATSSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEAL--- 157

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L        +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+V
Sbjct: 158 --LAAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLV 215

Query: 201 PLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P        I  Y     P  L       LF   RG  +    F   I++  +   + + 
Sbjct: 216 PFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVH 275

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++   HP
Sbjct: 276 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LKTLHAAHHP 331

Query: 320 S 320
            
Sbjct: 332 R 332


>gi|315302916|ref|ZP_07873649.1| tyrosine recombinase XerC [Listeria ivanovii FSL F6-596]
 gi|313628712|gb|EFR97112.1| tyrosine recombinase XerC [Listeria ivanovii FSL F6-596]
          Length = 300

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 84/308 (27%), Positives = 145/308 (47%), Gaps = 15/308 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q +L  L  ER  S+ T  +YE D   F  FL      +  I   +Q+++ ++R ++
Sbjct: 6   KWEQMFLDYLHSERNYSENTSTAYENDLLDFRRFL-----NEQAITQYKQVTFLDVRIYL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++ + +     ++ R +S ++SF  +L +  + TE+    + + K    LP+    ++  
Sbjct: 61  TELKQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEME 120

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L   V      + + +  R+  +L +LYG G+R+SE   +   +I      + I+GKG+
Sbjct: 121 ALFQVVY----EDNETLTIRDRVLLEVLYGTGIRVSECAGILLTDIDQTYQAILIRGKGN 176

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R VP       AI +Y D     +         L     G PL     +  + ++   
Sbjct: 177 KERYVPFGVYAEDAITDYLDCRLALMKRFNKTHDSLLINHYGDPLTTRGIRYCLTKIISK 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRH+FAT LL+NG D+R++Q +LGH  LS+TQIYT+V  ++    +   
Sbjct: 237 ASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----LKST 292

Query: 314 YDQTHPSI 321
           Y + HP  
Sbjct: 293 YMKHHPRA 300


>gi|322509106|gb|ADX04560.1| xerC [Acinetobacter baumannii 1656-2]
 gi|323519136|gb|ADX93517.1| site-specific recombinase XerC [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 295

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 167/306 (54%), Gaps = 14/306 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+  +I+   S+ T+ +YE D + FL F       ++    +R +  +++R ++++R  
Sbjct: 2   WLKERKIQNQ-SEHTITAYERDVKSFLEFC------ELKKVDLRNVEASDLREYLAQRVE 54

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           Q ++   S++R L+ I+ F+K+ ++ K    +   + +  ++   LP  ++ +    ++D
Sbjct: 55  QDQLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILD 114

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             +     + + +  R+ A+L LLY  GLR++E   LT ++I  ++  +RI GKG+K RI
Sbjct: 115 QPMPEKPVDQQ-LWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRI 173

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP     ++++L +  +         Q   +F   RG  L P   ++ ++   +  G+ +
Sbjct: 174 VPFGKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNV 233

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRH FA+H+LS+ GDLRS+Q +LGH  LSTTQIYT+++     D + ++YDQ H
Sbjct: 234 DLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHLAQVYDQAH 289

Query: 319 PSITQK 324
           P  T+ 
Sbjct: 290 PRATKH 295


>gi|225164361|ref|ZP_03726626.1| integrase family protein [Opitutaceae bacterium TAV2]
 gi|224801041|gb|EEG19372.1| integrase family protein [Opitutaceae bacterium TAV2]
          Length = 329

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 89/328 (27%), Positives = 151/328 (46%), Gaps = 15/328 (4%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL-----AFYTEE 56
           E    P +    + +    +L  L  ER  S  T+++Y      F  +L          E
Sbjct: 9   ENAQQPAVPPAIVAEWLTPFLDYLARERRYSVYTVRNYRQAFEDFYRWLVSSGLRDAANE 68

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
                   +L+  ++R F+ +   ++   R+L   +SG++SF KY  +    + + ++ +
Sbjct: 69  SAASLAPDKLTPRDLRDFVIE-GQRRFDRRTLHNHVSGLRSFYKYWLRHGRVSRNPLVGL 127

Query: 117 RNLKKSNSLPRALNEKQALTLV---DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
              K    LP+ L E+Q   L+     +L + +  T +   R+   + LLYG GLR+SE 
Sbjct: 128 ALPKLEKRLPKFLTEQQMKLLLSGPQRLLDNVADITPFTAWRDRLAMELLYGGGLRVSEL 187

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
            +L    I       R+ GKG K R+ PL       ++++ +    D   +   P+    
Sbjct: 188 TALDYGQIDFTSGVARVLGKGRKERLCPLGKVALAVLVKWKNEYARD--TSPAAPVLVTP 245

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
             + +     Q  +++     GLP   + H LRHS+ATHLL+ G DLR +Q +LGH  L+
Sbjct: 246 EHERMPVRQVQLMLKRYLALAGLPTDLSPHKLRHSYATHLLNAGADLRLVQELLGHASLN 305

Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           TTQIYT+V+       + +IYD+ HP  
Sbjct: 306 TTQIYTHVSIAR----LRDIYDKAHPRA 329


>gi|146280903|ref|YP_001171056.1| site-specific tyrosine recombinase XerC [Pseudomonas stutzeri
           A1501]
 gi|166918896|sp|A4VGW3|XERC_PSEU5 RecName: Full=Tyrosine recombinase xerC
 gi|145569108|gb|ABP78214.1| integrase/recombinase XerC [Pseudomonas stutzeri A1501]
 gi|327479172|gb|AEA82482.1| site-specific tyrosine recombinase XerC [Pseudomonas stutzeri DSM
           4166]
          Length = 299

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 93/311 (29%), Positives = 149/311 (47%), Gaps = 17/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  E   + + L   R LS  +L +Y  D  + L +      E+  I   R L    +R 
Sbjct: 1   MQNELDAYFEYLRSARQLSGHSLDAYRRDLDKVLTYC-----ERERIAGWRDLQGRHLRH 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            I+++  Q    RSL R LS ++   +YL +  +        +   K    LPR L+  +
Sbjct: 56  LIAEQHRQGQSSRSLARLLSSVRGLYRYLNQEGLCEHDPATGLSAPKGERRLPRLLDTDR 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           A+ L+D  +     E  +I  R+ A+L L Y  GLR+SE + L    +      +R+ GK
Sbjct: 116 AMQLLDGGV-----EDDFIARRDQAMLELFYSSGLRLSELVGLNLDQLDLAAGLVRVLGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K+R +P+    R+A+  +  L    L       +F G +G+ L     Q  +RQ    
Sbjct: 171 GNKVRELPVGSKAREALQAWLPLRT--LAGPADGAVFIGQQGRRLGARAVQLRVRQAGVR 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRHSFA+HLL +  DLRS+Q +LGH  + TTQIYT+++ ++    + ++
Sbjct: 229 -ELGQHLHPHMLRHSFASHLLESSQDLRSVQELLGHADIGTTQIYTHLDFQH----LAKV 283

Query: 314 YDQTHPSITQK 324
           YD  HP   +K
Sbjct: 284 YDHAHPRAKRK 294


>gi|300933911|ref|ZP_07149167.1| integrase/recombinase [Corynebacterium resistens DSM 45100]
          Length = 325

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 81/322 (25%), Positives = 143/322 (44%), Gaps = 19/322 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
               L +  + + ++L+   G S+ T+ +Y  D +  L            + ++ + +  
Sbjct: 4   TPPSLSRALEEYEEHLQFVVGRSENTITAYRKDLKAALE----------GLDSVDEFTLE 53

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
             R  +           S+ R +S +K F  +L  +     + +  +R  K   SLPR L
Sbjct: 54  HARDVLGWALDAGHSRSSMARMVSSLKGFGSFLAHKGWVEANPVAALRAPKLDRSLPRVL 113

Query: 130 NEKQALTLVDNVLLHTS-HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
             +QA  ++D    H   +    +  R+ A+  LL+  G+R++E       ++    + +
Sbjct: 114 RTEQATAVLDRARDHARINNEDPLATRDWAMAELLFATGMRVAELTGTDIDDVDFTHNVV 173

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIRGKPLNPGVFQR 245
           R+ GKG+K R+VP  P+ R A+  +       LN         LF G RG  +N    + 
Sbjct: 174 RVVGKGNKQRVVPFGPTARTAVEAWISRRKEVLNPANGQGVAALFLGARGGRINQRQVRS 233

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            I +L    G P   + H  RHS AT +L  G DLR +Q +LGH  + TTQIYT+V ++ 
Sbjct: 234 VINELTDAAGAPR-MSPHGFRHSAATAILEGGADLRVVQEMLGHASMQTTQIYTHVGTER 292

Query: 306 GGDWMMEIYDQTHPSITQKDKK 327
               +  +++Q HP      ++
Sbjct: 293 ----LKAVFNQAHPRAESPAQQ 310


>gi|82750853|ref|YP_416594.1| integrase/recombinase [Staphylococcus aureus RF122]
 gi|123754641|sp|Q2YXL6|XERC_STAAB RecName: Full=Tyrosine recombinase xerC
 gi|82656384|emb|CAI80803.1| integrase/recombinase [Staphylococcus aureus RF122]
          Length = 298

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 84/309 (27%), Positives = 150/309 (48%), Gaps = 16/309 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +L  L++ER  S+ TL+SY+ D  QF  FL     +      +    Y + R ++S 
Sbjct: 5   QEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLQ------LNTFEYRDARNYLSY 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             +  +   S+ R +S +++F +Y         +  + + + KK   LP+   E++   L
Sbjct: 59  LYSNHLKRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEAL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                  T  E      R+  IL LLY  G+R+SE +++  Q+I    + + + GKG K 
Sbjct: 119 F-----KTVEEDTSKSLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVFGKGSKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R VP     R++I  Y +      + N    L   ++G+ +     +  +  + +     
Sbjct: 174 RFVPFGAYCRQSIENYLEHFKPIQSCNHDF-LIVNMKGEAITERGVRYVLNDIVKRTAGV 232

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++     + ++Y   
Sbjct: 233 SEIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ----LRKVYLNA 288

Query: 318 HPSITQKDK 326
           HP   ++++
Sbjct: 289 HPRAKKENE 297


>gi|238028460|ref|YP_002912691.1| site-specific tyrosine recombinase XerD [Burkholderia glumae BGR1]
 gi|237877654|gb|ACR29987.1| Tyrosine recombinase XerD [Burkholderia glumae BGR1]
          Length = 341

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 132/304 (43%), Gaps = 17/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   L +E GLS+ TL +Y  D   F  +LA          +I  +    +  +I+ 
Sbjct: 53  IELFCDALWLEHGLSQNTLDAYRRDLTLFAQWLATVHG-----ASIDAVDEAMLTGYIAA 107

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R   K    S  R LS  + +  +  +         L + + K+    P  L+E Q   L
Sbjct: 108 RSDGK--ATSSNRRLSVFRRYYGWALREHRAALDPTLRLLSAKQPARFPATLSEAQVEAL 165

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +             +  R+  +L L+Y  GLR+SE + L    +  +   +R+ GKG K 
Sbjct: 166 L-----AAPEVGTALGLRDRTMLELMYASGLRVSELVMLKTVEVGLNDGVVRVMGKGSKE 220

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP        I  Y     P  L       LF   RG+ +    F   I++      +
Sbjct: 221 RLVPFGEVAHGWIERYLREARPALLGARTSDALFVTARGEGMTRQQFWNIIKRHAMRAEI 280

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++  
Sbjct: 281 RAHLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARER----LRTLHAA 336

Query: 317 THPS 320
            HP 
Sbjct: 337 HHPR 340


>gi|193078105|gb|ABO13046.2| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC
           17978]
          Length = 308

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 88/306 (28%), Positives = 167/306 (54%), Gaps = 14/306 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+  +I+   S+ T+ +Y+ D + FL F       ++    +R +  +++R ++++R  
Sbjct: 15  WLKERKIQNQ-SEHTITAYKRDVKSFLEFC------ELKKVDLRNVEASDLREYLAQRVE 67

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           Q ++   S++R L+ I+ F+K+ ++ K    +   + +  ++   LP  ++ +    ++D
Sbjct: 68  QDQLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIEMVNQILD 127

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             +     + + +  R+ A+L LLY  GLR++E   LT ++I  ++  +RI GKG+K RI
Sbjct: 128 QPMPEKPVDQQ-LWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRI 186

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP     ++++L +  +         Q   +F   RG  L P   ++ ++   +  G+ +
Sbjct: 187 VPFGKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNV 246

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRH FA+H+LS+ GDLRS+Q +LGH  LSTTQIYT+++     D + ++YDQ H
Sbjct: 247 DLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHLAQVYDQAH 302

Query: 319 PSITQK 324
           P  T+ 
Sbjct: 303 PRATKH 308


>gi|258542904|ref|YP_003188337.1| site-specific tyrosine recombinase XerC [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256633982|dbj|BAH99957.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637042|dbj|BAI03011.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640094|dbj|BAI06056.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643151|dbj|BAI09106.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646206|dbj|BAI12154.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649258|dbj|BAI15199.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652245|dbj|BAI18179.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655302|dbj|BAI21229.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-12]
          Length = 315

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 108/321 (33%), Positives = 170/321 (52%), Gaps = 26/321 (8%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  Q +L+ + +E+  S LT+++Y+ D  +FL F+  + +    +  +  +S  + RA++
Sbjct: 5   EAVQKFLEWMAVEKQASPLTIEAYQGDLARFLGFMTTHLDGLPDMIGLGLISLRDFRAWL 64

Query: 76  SKRRTQKIGD-----------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           +  + +               R+  R +S ++SF KYL +R+      I  +   +    
Sbjct: 65  AYEQAEASKPTARKTSSDQATRTRARRVSAVRSFFKYLARRQGVENPAIQLLSTPRTKKP 124

Query: 125 LPRALNEKQALTLVD--NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           LPR L + QAL   +  + L HT  E +     ++A+  LLYGCGLRISEAL+L   ++ 
Sbjct: 125 LPRPLAKDQALAAPEDISDLAHTPMEQQR----DAALFLLLYGCGLRISEALNLNIADLD 180

Query: 183 --DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                + LRI GKG K R+VP+LP V++A+  +              PLF G+RGK L P
Sbjct: 181 VMRSSNVLRILGKGGKERLVPVLPVVQQALEAW---RTRHPAPTPDAPLFVGVRGKRLQP 237

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            + Q+ +R+ R   GLP   T H LRHSFATHL+  G DLR IQ +LGH  LSTTQ YT 
Sbjct: 238 AIAQKAMREWRHLSGLPDYVTPHALRHSFATHLMEGGADLRVIQELLGHASLSTTQRYTL 297

Query: 301 VNSKNGGDWMMEIYDQTHPSI 321
            +       +++++ + HP  
Sbjct: 298 ADEAR----LLDVWTRAHPRA 314


>gi|225163580|ref|ZP_03725889.1| tyrosine recombinase XerD [Opitutaceae bacterium TAV2]
 gi|224801815|gb|EEG20102.1| tyrosine recombinase XerD [Opitutaceae bacterium TAV2]
          Length = 342

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 91/324 (28%), Positives = 145/324 (44%), Gaps = 11/324 (3%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
           G N+   +   L     ++   LE+ERG S  T+++YE D  Q   FL    + +  +  
Sbjct: 28  GVNMTAELPPGLADPITDFCAVLELERGRSDHTVEAYESDLTQCATFL----QRQKKLAD 83

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
            R ++   +  ++           SL R LS ++ F ++L + +   +     ++  K  
Sbjct: 84  WRAVTGAAVTDWLYSLDGDDYSVASLARKLSALRMFARHLVREQTRPDDFTELLQGPKLV 143

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             +P  LN ++   L+                R+ AIL L Y  GLR+SE   L  Q + 
Sbjct: 144 RRVPGTLNAEEVARLLAAPGGGG-GGGGPHALRDRAILELFYSSGLRVSELSGLLLQQVD 202

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNP 240
            +   LR+ GKG K R+VP+    R+A+  Y       F         LF   RG  ++ 
Sbjct: 203 LENGMLRVFGKGAKERVVPVGSKAREALATYLTAARHHFVKEKKTGSQLFLSERGTAISR 262

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            +    +++  +  G+      H LRHSFATHLLS G DLR+IQ +LGH  + TTQIYT 
Sbjct: 263 KMLWVLVKKYTKLAGITKPVKPHLLRHSFATHLLSGGADLRAIQEMLGHATIGTTQIYTA 322

Query: 301 VNSKNGGDWMMEIYDQTHPSITQK 324
           V  +   D     + + HP   ++
Sbjct: 323 VEERRLLDQ----HARFHPRNQEE 342


>gi|238561655|ref|ZP_00441610.2| tyrosine recombinase XerD [Burkholderia mallei GB8 horse 4]
 gi|254208847|ref|ZP_04915195.1| tyrosine recombinase XerD [Burkholderia mallei JHU]
 gi|147750723|gb|EDK57792.1| tyrosine recombinase XerD [Burkholderia mallei JHU]
 gi|238524066|gb|EEP87501.1| tyrosine recombinase XerD [Burkholderia mallei GB8 horse 4]
          Length = 329

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 84/301 (27%), Positives = 136/301 (45%), Gaps = 17/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   + +E GLS+ TL +Y  D + F  +LA          ++   S   +  +I+ R  
Sbjct: 44  FCDAMWLEHGLSRNTLDAYRRDLQLFAQWLAARH-----AASVDHASEPTLTEYIAARSD 98

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            K    S  R LS  + +  +  +         L + + K++   P  L+E Q   L   
Sbjct: 99  GK--ATSSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEAL--- 153

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L        +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+V
Sbjct: 154 --LAAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLV 211

Query: 201 PLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P        I  Y     P  L       LF   RG  +    F   I++  +   + + 
Sbjct: 212 PFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVH 271

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++   HP
Sbjct: 272 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LKTLHAAHHP 327

Query: 320 S 320
            
Sbjct: 328 R 328


>gi|254203866|ref|ZP_04910226.1| tyrosine recombinase XerD [Burkholderia mallei FMH]
 gi|147745378|gb|EDK52458.1| tyrosine recombinase XerD [Burkholderia mallei FMH]
          Length = 333

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 84/301 (27%), Positives = 136/301 (45%), Gaps = 17/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   + +E GLS+ TL +Y  D + F  +LA          ++   S   +  +I+ R  
Sbjct: 48  FCDAMWLEHGLSRNTLDAYRRDLQLFAQWLAARH-----AASVDHASEPTLTEYIAARSD 102

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            K    S  R LS  + +  +  +         L + + K++   P  L+E Q   L   
Sbjct: 103 GK--ATSSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEAL--- 157

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L        +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+V
Sbjct: 158 --LAAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLV 215

Query: 201 PLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P        I  Y     P  L       LF   RG  +    F   I++  +   + + 
Sbjct: 216 PFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVH 275

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++   HP
Sbjct: 276 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LKTLHAAHHP 331

Query: 320 S 320
            
Sbjct: 332 R 332


>gi|294012827|ref|YP_003546287.1| integrase/recombinase XerC [Sphingobium japonicum UT26S]
 gi|292676157|dbj|BAI97675.1| integrase/recombinase XerC [Sphingobium japonicum UT26S]
          Length = 298

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 117/303 (38%), Positives = 176/303 (58%), Gaps = 13/303 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + W ++L ++R  S  T+++Y     + L FL  +  E  T   +  +   ++RAF++ R
Sbjct: 9   EQWRRHLALDRRRSVHTVRAYVATAERLLAFLEEHRGEAATAAMLAGIEQADLRAFLTVR 68

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R   IG+ S  R LS ++ FL+++       ++ +  ++  +    LPR ++  +A+ L 
Sbjct: 69  RMDGIGNVSAARELSAVRGFLRFVGGE----DARVPMLKGPRVKRGLPRPVSPDEAVAL- 123

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
               +  +   +WI AR+ A+L LLYG GLRI EA++LT   ++    TLR+ GK  K R
Sbjct: 124 -AGDIAETAREEWIGARDWAVLLLLYGAGLRIGEAMALT-GAVLPLGETLRVTGKRGKTR 181

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVPLLP VRKA+  Y  LCPF    +   PLFRG RG PL+P + +R ++  R  LGL  
Sbjct: 182 IVPLLPQVRKAMEAYVALCPFGQEKDA--PLFRGARGGPLSPALIRRAVQGARGRLGLSD 239

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
            TT H LRHSFATHLL  G DLRS+Q +LGH  LS+TQIYT V++ +    ++++Y   H
Sbjct: 240 RTTPHALRHSFATHLLGRGADLRSLQELLGHASLSSTQIYTQVDAAH----LLDVYRNAH 295

Query: 319 PSI 321
           P  
Sbjct: 296 PRA 298


>gi|221211426|ref|ZP_03584405.1| tyrosine recombinase XerD [Burkholderia multivorans CGD1]
 gi|221168787|gb|EEE01255.1| tyrosine recombinase XerD [Burkholderia multivorans CGD1]
          Length = 316

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 86/320 (26%), Positives = 139/320 (43%), Gaps = 17/320 (5%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           +G   P             +   L +E GL++ TL +Y  D   F  +LA   +      
Sbjct: 12  DGTAAPSPALLASRASIDLFCDALWLEHGLARNTLDAYRRDLTLFSQWLAATHD-----A 66

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            +     T +  +I+ R   K    S  R LS  + +  +  +    +    L + + K+
Sbjct: 67  ALDAADETMLTGYIAARSDGK--ATSSNRRLSVFRRYYGWAVREHRASADPTLRIASAKQ 124

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           +   P  L+E Q   L+             +  R+  +L L+Y  GLR+SE ++L    +
Sbjct: 125 AARFPSTLSEAQVEALL-----GAPDIATPLGLRDRTMLELMYASGLRVSELVTLKTVEV 179

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNP 240
             ++  +R+ GKG K R+VP        I  Y     P  L       LF   RG  +  
Sbjct: 180 GLNEGVVRVMGKGSKERLVPFGEVAHGWIERYLREARPALLGARAADALFVTARGDGMTR 239

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             F   I++  +   +    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+
Sbjct: 240 QQFWNIIKRHAQQADVRAHLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTH 299

Query: 301 VNSKNGGDWMMEIYDQTHPS 320
           V  +     +  ++ Q HP 
Sbjct: 300 VARER----LRTLHAQHHPR 315


>gi|76579073|gb|ABA48548.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1710b]
          Length = 508

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 83/301 (27%), Positives = 137/301 (45%), Gaps = 17/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   + +E GLS+ TL +Y  D + F  +LA        + ++   S   +  +I+ R  
Sbjct: 223 FCDAMWLEHGLSRNTLDAYRRDLQLFAQWLAARH-----VASVDHASEPTLTEYIAARSD 277

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            K    S  R LS  + +  +  +         L + + K++   P  L+E Q   L+  
Sbjct: 278 GK--ATSSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALL-- 333

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                      +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+V
Sbjct: 334 ---AAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLV 390

Query: 201 PLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P        I  Y     P  L       LF   RG  +    F   I++  +   + + 
Sbjct: 391 PFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVH 450

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++   HP
Sbjct: 451 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LKTLHAAHHP 506

Query: 320 S 320
            
Sbjct: 507 R 507


>gi|15895336|ref|NP_348685.1| XerD family integrase/recombinase [Clostridium acetobutylicum ATCC
           824]
 gi|34222991|sp|Q97HE5|XERD_CLOAB RecName: Full=Tyrosine recombinase xerD
 gi|15025053|gb|AAK80025.1|AE007709_9 Integrase/recombinase XerD family [Clostridium acetobutylicum ATCC
           824]
 gi|325509481|gb|ADZ21117.1| Integrase/recombinase XerD family [Clostridium acetobutylicum EA
           2018]
          Length = 292

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 80/304 (26%), Positives = 150/304 (49%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   +  ++ LS  T+ +Y  D ++F  FL    E+      +R++    I +++  
Sbjct: 5   IEQYFAEIR-KKNLSLNTIDAYRRDIKKFHEFLDEKGEK------LREVDVITIMSYVQY 57

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            +     + S+ R++  I++F KYL+ + I  ++ +      K   + P  L  ++   L
Sbjct: 58  LQKNGRANSSIVRNIVSIRNFFKYLEIKGIMDDNPVTQYEMPKIRRNFPDILTIEEVEKL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +                R+ A+L ++Y  G++++E L+LT  +I    S ++ +G  +K 
Sbjct: 118 LMG-----PDGNTDKGIRDKAMLEIMYATGMKVTELLNLTIYDINLKLSYIKCRGIKNKE 172

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RI+P+     K +  Y  +    LN+     LF  ++G  +    F + I+Q  +  G+ 
Sbjct: 173 RIIPMGSYAVKCLEIYLKVRT-KLNVQNIDYLFFNLQGDKMTRQGFWKIIKQYAQESGIK 231

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
               A+TLRHSFA HLL NG D+++IQ +LGH  ++TTQIY+ +  K     + E+Y +T
Sbjct: 232 KKINAYTLRHSFAVHLLQNGADIKTIQELLGHSDMATTQIYSGMYRKT---RIAEVYKKT 288

Query: 318 HPSI 321
           HP  
Sbjct: 289 HPRA 292


>gi|34222780|sp|Q48733|XERC_LACLE RecName: Full=Tyrosine recombinase xerC
 gi|1359910|emb|CAA59018.1| xerC recombinase [Lactobacillus leichmannii]
          Length = 295

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 145/304 (47%), Gaps = 16/304 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L+ ER  S  T+ +Y+ D      F     +E        Q+S  ++  ++   
Sbjct: 5   EQFLSYLKNERSYSPKTVLAYQKDLAAAKKFW----QENGGFPGWDQISRRDLEIYLLA- 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             QK+   +L R LS +KSF + L +R +      + ++  +    LP    + +   ++
Sbjct: 60  TGQKLASSTLSRKLSSLKSFYRLLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQVI 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                 + ++ K +  RN AI+ L Y  G+R+SE   L  + +  +   + + GKG+K R
Sbjct: 120 -----RSLNDGKPLTVRNRAIVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDR 174

Query: 199 IVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            V      +K + EY  +    L  N      +F    G+P++     + ++Q+ +  GL
Sbjct: 175 YVFFDQESKKYLEEYLQVARPSLLKNEPDTEAVFLNKLGRPISSRGIAKAVQQIFQKAGL 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V+ ++    +   Y Q
Sbjct: 235 TAGAHPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQH----LTAEYRQ 290

Query: 317 THPS 320
             P 
Sbjct: 291 HFPR 294


>gi|84496359|ref|ZP_00995213.1| tyrosine recombinase [Janibacter sp. HTCC2649]
 gi|84383127|gb|EAP99008.1| tyrosine recombinase [Janibacter sp. HTCC2649]
          Length = 299

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 89/311 (28%), Positives = 146/311 (46%), Gaps = 20/311 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++WL +L++ERGLS  TL++Y  D  ++  +L+      + I    +++   +  F+++ 
Sbjct: 2   RSWLTHLDVERGLSANTLKAYRRDLGRWTAYLSV-----VGIDDPAKVTERHVSEFLARL 56

Query: 79  RTQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           R        +   S  R+L  ++   K+L             +      + LP+A++  +
Sbjct: 57  REGDEDHPALAANSAARTLVSVRGLHKFLALEGEVDADPAAAVSPPPPPSRLPKAISVSE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++      +        R+ A+L LLYG G RISEA+ L   ++  D   +R++GK
Sbjct: 117 VERLLN----AAAVGDTPASLRDKALLELLYGTGARISEAVGLDIDDVDMDAGIVRLEGK 172

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G K R+VPL    R A+  Y       F         +F   RG  L+       +R   
Sbjct: 173 GGKQRLVPLGSYARTALTAYLVRGRGTFSTKGKGTPAIFLNQRGSRLSRQSAWSILRAAA 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               L    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQ+YT V  +     + 
Sbjct: 233 ARADLSGHLSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTVQQ----LR 288

Query: 312 EIYDQTHPSIT 322
           E+Y Q+HP   
Sbjct: 289 EVYAQSHPRAR 299


>gi|323464636|gb|ADX76789.1| tyrosine recombinase XerC [Staphylococcus pseudintermedius ED99]
          Length = 296

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 83/310 (26%), Positives = 150/310 (48%), Gaps = 16/310 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + + ++ +L  L+ ER  S  TL++Y  D  QF  FLA   +E++++   + +     R 
Sbjct: 1   MKQIQEQFLDMLKRERFFSDHTLKAYHDDLVQFNRFLA---QEQLSLTAFKYIDA---RN 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++       +   ++ R +S ++SF  +   +     +  + + + KK   LP     ++
Sbjct: 55  YLQTLYDLGLQRTTVSRKISTLRSFYAFWMTQDDEIVNPFVQLVHPKKERYLPTFFYTEE 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L   V+     +      R+  IL L Y  G+R+SE +SL  +++  +   +++ GK
Sbjct: 115 MEALFQTVM-----QDAHKGLRDRVILELFYATGIRVSELVSLKTEDVDLEMCWIKVLGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K RIVP     R++I +Y        N+     L   ++G+P+     +  +  + + 
Sbjct: 170 GGKERIVPFGEFCRQSIEQYLAEFAPIQNVQ-HPYLITNLKGQPITERGVRYVLNDIVKR 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                S   H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V ++     +  +
Sbjct: 229 TAGVTSIHPHKLRHTFATHLLNEGADLRTVQSLLGHVNLSTTGRYTHVTNQQ----LRNV 284

Query: 314 YDQTHPSITQ 323
           Y Q HP   +
Sbjct: 285 YLQAHPRAKK 294


>gi|134093692|ref|YP_001098767.1| site-specific tyrosine recombinase [Herminiimonas arsenicoxydans]
 gi|133737595|emb|CAL60638.1| tyrosine recombinase XerD [Herminiimonas arsenicoxydans]
          Length = 309

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 145/306 (47%), Gaps = 16/306 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            +   +   L +E GL+K +L++Y  D R F ++L          +T+      ++ A+ 
Sbjct: 18  AQIDEFCDTLWLEDGLAKNSLEAYRRDLRLFAVWLQAERG-----KTLLAAHADDVNAYF 72

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
             R        S  R L+ +K F +   ++   ++   L MR+ K+   +P+ L+E Q  
Sbjct: 73  FARHEVTKATSS-NRRLAVLKRFYQLALRQNRISDDPCLKMRSAKQPLRIPKTLSEAQVE 131

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+          T  +  R+  +L L+Y  GLR++E + L    +  ++  LRI GKG 
Sbjct: 132 ALL-----AAPDVTTPLGLRDRTMLELMYASGLRVTELVLLKSIEVGMNEGVLRITGKGG 186

Query: 196 KIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K R+VP     R  I  Y     P  L+  I   LF   RG  +   +F   I++     
Sbjct: 187 KTRLVPFGEEARVWIERYLKEARPLILDGQIDDALFVTARGAAMTRQMFWTLIKKHAAAA 246

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            +    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++
Sbjct: 247 EINAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARER----LKHLH 302

Query: 315 DQTHPS 320
              HP 
Sbjct: 303 QIHHPR 308


>gi|221633040|ref|YP_002522265.1| tyrosine recombinase xerD [Thermomicrobium roseum DSM 5159]
 gi|221155467|gb|ACM04594.1| tyrosine recombinase xerD [Thermomicrobium roseum DSM 5159]
          Length = 331

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 82/297 (27%), Positives = 139/297 (46%), Gaps = 10/297 (3%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + +  + +  + +L  +  ERGLS  T+ +Y  D  QF  ++A    E+  ++   +L  
Sbjct: 13  VEAGPMQQAIEEFLTGVVRERGLSPNTIAAYRNDLEQFANYVA----ERFGLRDWSELVS 68

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             + AF+   R ++  + +  R L+ IKSF  YL +  +   +    +   +     PRA
Sbjct: 69  EHLEAFLGYLRDRQYAETTAARKLAAIKSFCHYLVRAGLIGANPADGLPVPRVGRFAPRA 128

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           +  K+   L+       S +      R+ A+L  L   GLR+SE  +L  +++  D+  L
Sbjct: 129 IGPKEVEQLI----AAASSDRTPEGLRDRAMLITLATTGLRVSELTALDVRDVDLDRGEL 184

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
            ++    + R+VPL     +A+ +Y +   P    L  +  LF   RG  L    F   +
Sbjct: 185 IVRRPNGRERVVPLAREAIEALRDYLERGRPGFTTLKGEQALFLNHRGSRLTRQGFWLIL 244

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +      GLP   T HTLRHSFA   L +G DLR +Q +LGH   +TTQ+Y  +  +
Sbjct: 245 KNYAAAAGLP-EVTPHTLRHSFAVRALVDGWDLRDLQRVLGHVSPATTQVYRQLLER 300


>gi|149177761|ref|ZP_01856361.1| integrase/recombinase [Planctomyces maris DSM 8797]
 gi|148843411|gb|EDL57774.1| integrase/recombinase [Planctomyces maris DSM 8797]
          Length = 316

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 79/306 (25%), Positives = 140/306 (45%), Gaps = 16/306 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             + +L  LE E G++  T+ +Y  D  QFL +             + ++    +  ++ 
Sbjct: 24  HLEPFLHYLEAECGMAVNTVSAYRSDIVQFLDWYRMQKP-----VPLSEVDLAFLSGYLQ 78

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               +K+   ++ R L  +K F +YL    +  ES    + + K    LP+ L+ ++   
Sbjct: 79  HLNRRKLAATTVSRHLVTLKLFFRYLVLEGVLAESVADLLNSPKLWKYLPKVLSPEKV-- 136

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
              N LL           R+ AIL ++Y  G R++E ++L   ++   +   R  GKG+K
Sbjct: 137 ---NQLLAAPCRQDRYPLRDRAILAMMYATGCRVTEIVTLPLNSVKLTEGYARCVGKGNK 193

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLN--IQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            R+V L P    A+  Y       L      +  LF    GK L+  +    +++    +
Sbjct: 194 ERMVSLNPVAVAAVEAYLRHERPVLTRRNTTEQALFLNRGGKQLSRVMVWNIVKKNAARV 253

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G     + HTLRHSFATH+++ G ++R++Q +LGH  + TTQIYT+V+       +  ++
Sbjct: 254 GCSKEVSPHTLRHSFATHMMAGGAEIRALQELLGHANIRTTQIYTHVD----HSRLKAVH 309

Query: 315 DQTHPS 320
              HP 
Sbjct: 310 QMYHPR 315


>gi|283798528|ref|ZP_06347681.1| integrase/recombinase XerD [Clostridium sp. M62/1]
 gi|291073790|gb|EFE11154.1| integrase/recombinase XerD [Clostridium sp. M62/1]
 gi|295090134|emb|CBK76241.1| tyrosine recombinase XerD subunit [Clostridium cf. saccharolyticum
           K10]
          Length = 287

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 72/287 (25%), Positives = 129/287 (44%), Gaps = 12/287 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  E + ++  L   + +S+ T+ SY  D  QF  ++A        +    +++ T + +
Sbjct: 1   MFDEVEKFVGYLRDVKKMSQNTILSYRRDLLQFASYMADR-----GVAEAGKVTKTSLDS 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +I     +     ++ R L+ IK+F  Y         +    +R  K     P  L+ ++
Sbjct: 56  YILFLEREGKAAATISRMLASIKAFFHYESTEGYIKRNPAEMIRAPKIEKKAPSILSVEE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++     T  E +     + A+L LLY  G+R+SE ++L   +I      +     
Sbjct: 116 VTRLLNQPGGRTPKEIR-----DKAMLELLYATGIRVSELMNLNLHHINMTIGFITCSDS 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G   R +P     +KA+ +Y      +L        LF    G  ++   F + I+    
Sbjct: 171 GR-ERTIPFGRVAKKALDDYLKNSRPELTKKKESDWLFVNCSGGQMSRQGFWKIIKYYGE 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
             G+    T HTLRHSFA HL+S+G D++++Q ILGH  ++TTQ+Y 
Sbjct: 230 KAGIQTDITPHTLRHSFAAHLISSGADMKAVQQILGHSDMATTQMYA 276


>gi|312879576|ref|ZP_07739376.1| integrase family protein [Aminomonas paucivorans DSM 12260]
 gi|310782867|gb|EFQ23265.1| integrase family protein [Aminomonas paucivorans DSM 12260]
          Length = 294

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 96/313 (30%), Positives = 142/313 (45%), Gaps = 22/313 (7%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++  L      +L  L      S+ T  +Y  D  QF+ FL         ++    ++  
Sbjct: 1   MADSLSSLVDGFLDQLRYRLNRSENTTVNYAVDLAQFVEFLQLE-----GVEGPEGINRD 55

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R F+           S  R LS ++ F  YL +  +  +     +R  K   +LPRAL
Sbjct: 56  RVRGFLRSLMGYGFAPTSAARKLSSVRGFTAYLTREGLVEQDPAAGVRGPKLPANLPRAL 115

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
                + L++               R+  +L LLYG GLR+SEA  L  +++  ++  LR
Sbjct: 116 AYPDVVRLLEEG------PGGRHAQRDRLMLELLYGSGLRVSEAAGLDWEDLEPEERWLR 169

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIR 248
           + GKG K R VP    V++ + ++         +  Q P+F G RG P + P    R + 
Sbjct: 170 VLGKGQKGRAVPFGRGVKELLQDWRPD-----PVTRQGPVFPGERGAPRITPRTIHRLVT 224

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           Q  R +GL    T HTLRHSFATHLL  G  LR +Q +LGH  L TTQ Y ++ S    D
Sbjct: 225 QSARRVGLA-GVTPHTLRHSFATHLLEGGASLRVVQELLGHESLLTTQRYLDITS----D 279

Query: 309 WMMEIYDQTHPSI 321
            M   Y+Q HP  
Sbjct: 280 QMKRSYEQAHPRA 292


>gi|300114666|ref|YP_003761241.1| tyrosine recombinase XerD [Nitrosococcus watsonii C-113]
 gi|299540603|gb|ADJ28920.1| tyrosine recombinase XerD [Nitrosococcus watsonii C-113]
          Length = 305

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 92/306 (30%), Positives = 147/306 (48%), Gaps = 16/306 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + +L  L +E GL++ TL +Y  D   F  +L       I  Q        ++ A++
Sbjct: 14  EHLERFLDTLWLEEGLAENTLAAYRRDLEGFSRWLDSQGRALIRAQ------REDVLAYL 67

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           + R       RS+ RS+S ++ F +YL + KI        +   +    LP +L+E +  
Sbjct: 68  AHRLEGGGKSRSVARSVSSLRRFYRYLMREKIRDSDPSDRVELPRLGRLLPESLSEGEVE 127

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+             +  R+  +L  LY  GLR+SE ++LT   +   Q  +R+ GKG+
Sbjct: 128 ALL-----AAPKTNDSLGLRDRTMLETLYATGLRVSELVNLTLSQLNSRQGVVRLSGKGN 182

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K R+VPL       +  Y       L    +   LF   RG  ++   F   I++  R  
Sbjct: 183 KERLVPLGEVALSWLDRYCHEARPGLVRGQLNEILFLTRRGGAMSRQAFWYLIKRYARQS 242

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+  + + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + +++
Sbjct: 243 GIQKTLSPHTLRHAFATHLLNHGADLRVVQILLGHADLSTTQIYTHV----ARARLQQLH 298

Query: 315 DQTHPS 320
            Q HP 
Sbjct: 299 QQHHPR 304


>gi|314933431|ref|ZP_07840796.1| tyrosine recombinase XerC [Staphylococcus caprae C87]
 gi|313653581|gb|EFS17338.1| tyrosine recombinase XerC [Staphylococcus caprae C87]
          Length = 296

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 78/306 (25%), Positives = 148/306 (48%), Gaps = 16/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +L  L++ER  S+ TL+SY  D  QF  FL            +    Y + R +++ 
Sbjct: 5   QKTFLYMLKVERNFSEYTLKSYHDDLIQFNDFLVSEH------LDLATFEYKDARNYLAF 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             +  +   ++ R +S +++F +Y   +     +  + + + KK   LP+   E++   L
Sbjct: 59  LYSHNLKRTTVSRKISTLRTFYEYWMTQDELIVNPFVQLVHPKKEQYLPQFFYEEEMEAL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                  T  +      R+  I+ LLY  G+R+SE +++  ++I  +   +++ GKG+K 
Sbjct: 119 F-----QTVEQDNKKGMRDRVIIELLYATGIRVSELINIKIKDIDMNLPGVKVLGKGNKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R +P     +++I  Y D      + + +  L   + G P+     +  +  + +     
Sbjct: 174 RFIPFGEFCKQSIERYLDEFQPRKSSDHE-YLIVNMSGAPITERGVRYVLNDVVKRTAGV 232

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++     + ++Y   
Sbjct: 233 TDIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQ----LRKVYLNA 288

Query: 318 HPSITQ 323
           HP   +
Sbjct: 289 HPRAKK 294


>gi|300787863|ref|YP_003768154.1| integrase/recombinase XerD [Amycolatopsis mediterranei U32]
 gi|299797377|gb|ADJ47752.1| integrase/recombinase XerD [Amycolatopsis mediterranei U32]
          Length = 310

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 89/309 (28%), Positives = 143/309 (46%), Gaps = 21/309 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L +L +ERG ++ TL SY  D R++   L     + + +  I  ++   + AF +  R
Sbjct: 14  AYLDHLVVERGTARNTLDSYARDLRRYAAHL-----DGLGVAKIADVTSAHVTAFGAALR 68

Query: 80  TQKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
                 R     S  R+L  ++   K+     +T  +    +R    +  LP+AL     
Sbjct: 69  EGDDEHRPLAASSAARALVAVRGLHKFAHAEGLTEHNPAREVRPPTPAKRLPKALPVDDV 128

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           L L++     T         R+ A+L LLY  G RISEA+ L   ++   + T+ + GKG
Sbjct: 129 LRLLE-----TPPPDGERALRDRALLELLYSTGARISEAVGLDVDDVDGAERTVLLDGKG 183

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRR 252
            K R+VP+      A+  Y       L ++ +    LF   RG  L+     + ++    
Sbjct: 184 GKQRLVPIGRPALAALHAYTVRARPALAVHGRGTAALFLNARGSRLSRQSAWQVLKDTAG 243

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQ+YT V      + + E
Sbjct: 244 RAGITAVVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVT----VNTLRE 299

Query: 313 IYDQTHPSI 321
           +Y   HP  
Sbjct: 300 VYATAHPRA 308


>gi|315500433|ref|YP_004089236.1| integrase family protein [Asticcacaulis excentricus CB 48]
 gi|315418445|gb|ADU15085.1| integrase family protein [Asticcacaulis excentricus CB 48]
          Length = 304

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 80/309 (25%), Positives = 145/309 (46%), Gaps = 18/309 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            + + L +ER  S  T ++Y  D       L       I    +  L+  +I  F +   
Sbjct: 8   AFFEMLSVERNASPRTREAYGHDL------LDLRNHAGIDADGLLTLNEGDIAGFFAALD 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +   +L+R  + ++ F ++  +  ++       +   KK   LP+ L+ ++   L+ 
Sbjct: 62  ARGLASSTLQRKRAAVRQFYRFCVREGLSDNDPSRKIAAAKKGRPLPKILSRQEVDALIA 121

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                 +H+   +      ++ + Y  G+R+SE ++L    +  D + L ++GKG   R+
Sbjct: 122 AADAKDAHQATRL----QCLIEIAYASGMRVSEIVALRLDAVQKDPAYLIVKGKGGTERL 177

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGK-PLNPGVFQRYIRQLRRYLGL 256
           VPL PS R AI +Y D+ P  LN   +    LF     +  L      + + +     G+
Sbjct: 178 VPLNPSARAAIKDYLDIRPLFLNAKDKANPYLFCSRGAEGHLTRRRVGQLLDEAALEAGI 237

Query: 257 -PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            P   + H LRH+FATHLL  G DLR +Q++LGH  +STTQ+YT+V ++     + E+ +
Sbjct: 238 DPARVSPHVLRHAFATHLLEGGADLRVVQTLLGHADISTTQVYTHVATER----LKEVVE 293

Query: 316 QTHPSITQK 324
             HP   ++
Sbjct: 294 THHPLSKRR 302


>gi|237717383|ref|ZP_04547864.1| integrase [Bacteroides sp. D1]
 gi|229443366|gb|EEO49157.1| integrase [Bacteroides sp. D1]
          Length = 292

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 75/304 (24%), Positives = 146/304 (48%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L  L+ ER  S+ T+ +Y  D +Q   F     +E+       ++    IR +I  
Sbjct: 2   IESFLDYLQYERNYSEKTVLAYGEDIKQLQEF----AQEEYGKFNPLEVEAELIREWIVS 57

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S+ R LS +++F KYL ++  TT   +  ++  K    LP  L E +   L
Sbjct: 58  LMDKGYTSTSVNRKLSSLRTFYKYLLRQGETTIDPLRKIKGPKNKKPLPVFLKENEMNRL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D     T     +   R+  I+ + Y  G+R+SE + L  +++    S L++ GK +K 
Sbjct: 118 LD----ETDFGEGFKGCRDRLIIEMFYATGMRLSELIGLDNKDVDFSASLLKVTGKRNKQ 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R++P    +++ +LEY ++    +    +   F    G+ L   +    +++    +   
Sbjct: 174 RLIPFGDELQELMLEYINVRNETIPERSE-AFFIRENGERLYKNLVYNLVKRNLSKVATL 232

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FAT +L+N  +L +++ +LGH  ++TT+IYT+   +     + ++Y Q 
Sbjct: 233 KKKSPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIYTHATFEE----LKKVYKQA 288

Query: 318 HPSI 321
           HP  
Sbjct: 289 HPRA 292


>gi|187922354|ref|YP_001893996.1| site-specific tyrosine recombinase XerC [Burkholderia phytofirmans
           PsJN]
 gi|187713548|gb|ACD14772.1| tyrosine recombinase XerC [Burkholderia phytofirmans PsJN]
          Length = 307

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 86/321 (26%), Positives = 157/321 (48%), Gaps = 29/321 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                +L NLE ER LS  TL+ Y  +  +         ++    + +  L+  +IR  +
Sbjct: 5   DPIAAYLSNLEHERRLSAHTLRGYAHELEEL--------KQLAKGRPLESLTPVDIRGAV 56

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           S+     +  RS+   LS  ++F ++L  R     + +  +R  K++  LP+AL+   A 
Sbjct: 57  SRAHAGGLTARSISHRLSAWRAFYRWLAGRVDLAANPVATVRAPKQAKPLPKALSVDDAT 116

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-----------DD 184
            L+++    +         R+ A+L L Y  GLR++E + L  +               D
Sbjct: 117 RLMESPPAASPE-----GLRDHAMLELFYSSGLRLAELVGLDARFADADGYRSAGWLKLD 171

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
            + + + GKG++ R+VP+     +A+  +  +    +  +   PLF   RG  L+P V +
Sbjct: 172 SAEVEVLGKGNRRRVVPVGSKALEALGAWLAVRDQMVKHDPH-PLFLSARGNRLSPNVVR 230

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  ++ TQ+YT ++ +
Sbjct: 231 ERVKRAALVAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTALDFQ 290

Query: 305 NGGDWMMEIYDQTHPSITQKD 325
           +    +  +YDQ HP   ++D
Sbjct: 291 H----LAHVYDQAHPRAKKRD 307


>gi|320096216|ref|ZP_08027802.1| integrase/recombinase XerD [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319976842|gb|EFW08599.1| integrase/recombinase XerD [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 299

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 146/304 (48%), Gaps = 10/304 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              W  +L   RG S  T+++Y  D   FL F      +         L+    RA+++ 
Sbjct: 6   LDQWGAHLRHSRGASAHTVRAYTADLAAFLAFTGT---DPADPGAASALTLRAARAWLAD 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     ++ R ++ +++F  +  +  +        + + +    LPR +++ +A  L
Sbjct: 63  SVARGAARSTVSRHVAALRNFSAWAHREGLAPTDAAAALASARADQRLPRVVDQDEAAAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++      S +   +  R+ AIL L+Y  G+R+SEA SLT  +I     T+R+ GKGDK 
Sbjct: 123 LECARSRASAD-DPVSVRDWAILELIYATGIRVSEACSLTTSSIDPAALTVRVLGKGDKE 181

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R VP     R A+ ++       L +     LF G +G P++P V +  I ++    G+ 
Sbjct: 182 RTVPFGVPARDALDQWTVRARPSLAVGT-DALFVGAKGGPIDPRVVRAMIHRMCARAGV- 239

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRHS ATHLL  G DLR++Q ILGH  L+TTQ YT+V+       + ++Y + 
Sbjct: 240 RDIAPHGLRHSAATHLLQGGADLRAVQEILGHSSLATTQRYTHVD----AGRLSDVYRRA 295

Query: 318 HPSI 321
           HP  
Sbjct: 296 HPRA 299


>gi|186475291|ref|YP_001856761.1| site-specific tyrosine recombinase XerD [Burkholderia phymatum
           STM815]
 gi|184191750|gb|ACC69715.1| tyrosine recombinase XerD [Burkholderia phymatum STM815]
          Length = 315

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 137/304 (45%), Gaps = 17/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +   L +E GL++ TL +Y  D R F  +LA   +      ++   S  ++ A+ + 
Sbjct: 27  IDAFCDALWLEHGLARNTLDAYRRDLRLFSEWLAERRD-----ASLDAASEADLTAYSAA 81

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R   K    S  R LS  + +  +  +    +    L +R+ K+    P  L E Q   L
Sbjct: 82  RSADK--STSANRRLSVFRRYYAWAVREHRASADPTLRIRSAKQPPRFPSTLTEAQVEAL 139

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +          T  +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K 
Sbjct: 140 L-----GAPDVTTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKE 194

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R++P        I  Y     P  L       LF   R + +    F   I++      +
Sbjct: 195 RLIPFGEEAHAWIERYLRESRPALLGQRSADALFVTARAEGMTRQQFWNIIKRHALTAHV 254

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++  
Sbjct: 255 HAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARER----LKSLHAA 310

Query: 317 THPS 320
            HP 
Sbjct: 311 HHPR 314


>gi|315497300|ref|YP_004086104.1| integrase family protein [Asticcacaulis excentricus CB 48]
 gi|315415312|gb|ADU11953.1| integrase family protein [Asticcacaulis excentricus CB 48]
          Length = 304

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 125/307 (40%), Positives = 175/307 (57%), Gaps = 10/307 (3%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
             R  WLQ L+ ++ +S  TL++Y      ++  L       I +  +  L+  +IR ++
Sbjct: 5   DARLQWLQYLKAQKRVSPRTLEAYGHAFSLYIGHLRKALGADIDLNDLSHLTSADIRGWM 64

Query: 76  SKRR--TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +  R   + +  RSL + LS IKSF  YL        + ++  +  +   SLPR LNE Q
Sbjct: 65  AYLRGKDEPLSARSLAQHLSAIKSFHSYLDLHMGYANAQVVLTQGPRLKTSLPRPLNEDQ 124

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           A  L+  + L    +++W  AR+ A+L LLYGCGLRISEALSLT ++    + TLRI GK
Sbjct: 125 AQGLLTEIELD-GDKSEWEAARDRAVLLLLYGCGLRISEALSLTAKDTPLAE-TLRIVGK 182

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R+VP+L +VR+A+  Y  L PF L    +  LFR  RG PL+P   Q  ++ LR  
Sbjct: 183 GNKTRLVPVLEAVREAVDTYRRLQPFTL--TEEDALFRAPRGGPLSPRHVQLSVQHLRSR 240

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           LGL    T H LRHSFATHLL +G DLRSIQ +LGH  LSTTQ YT V+++     ++  
Sbjct: 241 LGLSDRATPHALRHSFATHLLGSGADLRSIQELLGHASLSTTQKYTQVDAER----LLSA 296

Query: 314 YDQTHPS 320
           Y   HP 
Sbjct: 297 YAAAHPK 303


>gi|52424578|ref|YP_087715.1| site-specific tyrosine recombinase XerC [Mannheimia
           succiniciproducens MBEL55E]
 gi|81387473|sp|Q65V80|XERC_MANSM RecName: Full=Tyrosine recombinase xerC
 gi|52306630|gb|AAU37130.1| XerC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 295

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 151/308 (49%), Gaps = 17/308 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q +   L  ER +S  TL +Y+      +  L     ++  IQ  RQ+S + +R  +++
Sbjct: 5   LQKYWNYLRNERQVSSYTLTNYQRQMDAVMKIL-----QENDIQNWRQVSPSVVRFILAQ 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            +   + ++SL   LS ++ FL +L  +     +  + +   K+   LP+ +N +Q   L
Sbjct: 60  SKKSGLHEKSLALRLSALRQFLAFLVLQGELKVNPAIGISAPKQGKHLPKNINAEQLNKL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +DN      +  + ID R+ A+L L+Y  GLR+SE   L   ++      +R+ GKG+K 
Sbjct: 120 LDN------NSKEPIDLRDKAMLELMYSSGLRLSELQGLNLTSLNFRSREIRVLGKGNKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RI+P       ++ E+  +    L       LF    G  ++    Q+ +       GL 
Sbjct: 174 RILPFGRHASHSVQEWLKVR--LLFNPKDDALFVSSLGNRMSNRSIQKRMEIWGVRQGLN 231

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRHSFAT +L    DLR++Q +LGH  LSTTQIYT++N ++    + E+YDQ 
Sbjct: 232 SHLNPHKLRHSFATQMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEVYDQA 287

Query: 318 HPSITQKD 325
           HP   ++ 
Sbjct: 288 HPRAKRRK 295


>gi|225013068|ref|ZP_03703483.1| integrase family protein [Flavobacteria bacterium MS024-2A]
 gi|225002796|gb|EEG40777.1| integrase family protein [Flavobacteria bacterium MS024-2A]
          Length = 289

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 87/301 (28%), Positives = 149/301 (49%), Gaps = 16/301 (5%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
            L IERGLS+ ++Q+Y  D      FL     E    ++    S   ++ FI     + +
Sbjct: 2   YLTIERGLSENSIQNYILDVHALQYFLINEKIE----ESPTDCSLDSVQKFI-YETAKIL 56

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
              +  R LSG++SF  YL      T +    +   K    LP  L+ ++   +++ + L
Sbjct: 57  SPHTQARRLSGLRSFFDYLIFESYRTSNPTDLIEAPKLGRKLPDVLSTEEIELMINQINL 116

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
                      RN AIL +LYG G+R+SE  +L+  N+  ++  +R+ GKG+K R+VP+ 
Sbjct: 117 SHPQ-----GQRNRAILEILYGSGIRVSELTNLSLSNLFFEEDMIRVHGKGNKQRLVPMG 171

Query: 204 PSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
              ++ + EY         +++  +  +F   RG  L   +    I+ L     +     
Sbjct: 172 GISKEFLEEYITETRKNQKISVKDKDIVFLNRRGNGLTRQMIFTLIKDLAIKANVKKQVG 231

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            HT RHSFATHLL NG DLR+IQ ++GH  ++TT+IYT++++++    +  + ++ HP  
Sbjct: 232 PHTFRHSFATHLLENGADLRTIQILMGHESITTTEIYTHLDTQH----LRSVIERFHPRT 287

Query: 322 T 322
            
Sbjct: 288 K 288


>gi|312871428|ref|ZP_07731523.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           3008A-a]
 gi|311093081|gb|EFQ51430.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           3008A-a]
          Length = 307

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 84/318 (26%), Positives = 148/318 (46%), Gaps = 19/318 (5%)

Query: 15  LKERQNWLQ----NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           +K+  ++L+     L+ ER  S  T ++Y  D  +   F      E        +LS  +
Sbjct: 1   MKQADDFLKLYYNYLKNERNYSINTCKAYMDDLSEARTFFV----ENGGFIDWIKLSSRD 56

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           I  FI     +K    +  R +S ++SF ++L KR I   + +  +        LP  L 
Sbjct: 57  IEIFIQYLAQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGDHKKLPEFLY 116

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             + + ++ ++       T  +  RN A+L L Y  G+R+SE  +L  + I  + + + +
Sbjct: 117 NDEMVKVLKSI-----STTTPLGLRNMALLELFYATGMRVSEIANLKLEQIDFELNLILV 171

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIR 248
            GKG+K R V      + A+  Y       L L+      +F    G  +     +  I+
Sbjct: 172 HGKGNKDRYVAFGEEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNRITSRGLEYIIK 231

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            +    G+  S   H LRH+FAT +L+NG DLR++Q +LGH  +STTQIYT+V  ++   
Sbjct: 232 NIFLNAGISASVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQH--- 288

Query: 309 WMMEIYDQTHPSITQKDK 326
            + +IY +  P   ++++
Sbjct: 289 -LCDIYHKYFPRDNKENE 305


>gi|307728182|ref|YP_003905406.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1003]
 gi|307582717|gb|ADN56115.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1003]
          Length = 307

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 88/317 (27%), Positives = 157/317 (49%), Gaps = 29/317 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L NLE ER LS  TL+ Y  +  +  +            + ++ L+  +IR  +++  
Sbjct: 9   AYLSNLEHERRLSAHTLRGYTHELDELRLLAKG--------RPLQSLTAVDIRGAVARAH 60

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +  RS+   LS  ++F ++L  R     + +  +R  K+  +LP+AL+   A  L++
Sbjct: 61  AGGLTARSISHRLSAWRAFYRWLAGRIDLPANPVATVRAPKQPKTLPKALSVDDANRLME 120

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-----------DDQSTL 188
                T         R+ A+L L Y  GLR++E + L  +               D + +
Sbjct: 121 -----TPPAASAEGLRDHAMLELFYSSGLRLAELVGLDVRFADADGYRSAGWLKLDSAEV 175

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG++ RIVP+     +A+  +  +    + L+   PLF   RG  L+P V +  ++
Sbjct: 176 EVLGKGNRRRIVPVGSKALEALNAWLAVRDQMVRLDPH-PLFLSARGNRLSPNVVRERVK 234

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     G+P +   H LRHSFATH+L + GDLR++Q +LGH  ++ TQ+YT ++ ++   
Sbjct: 235 RAALVAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTGLDFQH--- 291

Query: 309 WMMEIYDQTHPSITQKD 325
            +  +YDQ HP   ++D
Sbjct: 292 -LARVYDQAHPRAKKRD 307


>gi|326693050|ref|ZP_08230055.1| tyrosine recombinase XerC [Leuconostoc argentinum KCTC 3773]
          Length = 302

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 86/310 (27%), Positives = 151/310 (48%), Gaps = 14/310 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           KE Q +   L+ ER  S LT+++Y  D   F  FLA    E     T R +   ++R ++
Sbjct: 4   KEAQLYQDYLQAERQYSDLTVKAYLTDIEAFTTFLA----ENGGFTTYRAVQTLDVRVYL 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++   +++   ++ R +S ++ F +++   +  +++   N+   K  + LP    E +  
Sbjct: 60  NELYERQLARTTIARKISSLRMFFQFMLANQFVSDNPFENVALRKHQSHLPEFFYESELT 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           TL +        E + +  RN+A+L  LY  G R++E  +LT   +   Q  + I GKG+
Sbjct: 120 TLFEV----AYAEDEPLWQRNAALLEFLYATGARVAEIANLTITQLDFAQRLVLIHGKGN 175

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R VP      +A+ +Y       L         +F   RG+P+        + +L + 
Sbjct: 176 KDRYVPFGHFAAQAMTQYLHELRPQLVAKQAPHDRVFVNHRGEPITAAGITYILNELMKK 235

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L  +   H LRH+FATHLL++G D+R++Q +LGH  LSTTQ+YT+V  ++    + + 
Sbjct: 236 SALTGTIHPHMLRHTFATHLLNHGADMRTVQELLGHVNLSTTQMYTHVTRES----LQKN 291

Query: 314 YDQTHPSITQ 323
           Y    P   +
Sbjct: 292 YQSFFPRAKK 301


>gi|258423907|ref|ZP_05686792.1| tyrosine recombinase XerC [Staphylococcus aureus A9635]
 gi|257845936|gb|EEV69965.1| tyrosine recombinase XerC [Staphylococcus aureus A9635]
          Length = 298

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 84/309 (27%), Positives = 150/309 (48%), Gaps = 16/309 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +L  L++ER  S+ TL+SY+ D  QF  FL     +      +    Y + R ++S 
Sbjct: 5   QEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLQ------LNTFEYKDARNYLSY 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             +  +   S+ R +S +++F +Y         +  + + + KK   LP+   E++   L
Sbjct: 59  LYSNHLKRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEAL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                  T  E      R+  IL LLY  G+R+SE +++  Q+I    + + + GKG K 
Sbjct: 119 F-----KTVEEDTSKSLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R VP     R++I  Y +      + N    L   ++G+ +     +  +  + +     
Sbjct: 174 RFVPFGAYCRQSIENYLEHFKPIQSCNHDF-LIVNMKGEAITERGVRYVLNDIVKRTAGV 232

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++     + ++Y   
Sbjct: 233 SEIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ----LRKVYLNA 288

Query: 318 HPSITQKDK 326
           HP   ++++
Sbjct: 289 HPRAKKENE 297


>gi|303232711|ref|ZP_07319396.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae
           PB189-T1-4]
 gi|302481197|gb|EFL44272.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae
           PB189-T1-4]
          Length = 324

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 94/321 (29%), Positives = 147/321 (45%), Gaps = 25/321 (7%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +    +L+ +  ER  S  TL++Y  D   +  FL         I T   ++   +  ++
Sbjct: 5   EAIDEYLRYIRFERNFSANTLEAYARDLNAYCEFLTDKH-----IDTPVHITRRVVEEYL 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           S   T      S++R +S IKSF +++   +I T     ++   KK   LP+ L+  +  
Sbjct: 60  SYVATLDKAPSSVQRCVSAIKSFHRFMVIEQICTAHPTADIALPKKPALLPQVLSHTEVE 119

Query: 136 TLVDNVLLHTSHETKWID-------------ARNSAILYLLYGCGLRISEALSLTPQNIM 182
            L+D   L                        R+ AIL LLYGCGLR+SE  +LT  N+ 
Sbjct: 120 RLLDEPFLQELQPAAHTTKQGTTTMTKAACFWRDKAILELLYGCGLRVSELCNLTCDNVS 179

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNP 240
                LR+ GKG K R+VPL+ S   A   Y D    +L         +F  +RG  ++ 
Sbjct: 180 RTDEVLRVIGKGSKERVVPLIGSALAAYTRYVDTWRAELYNPRRSNHAVFLSVRGSAISR 239

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                 + +  R +G+      HTLRH++ATHLL  G DLR +Q +LGH  ++TTQ+YT+
Sbjct: 240 QAVFALVEKYGRMVGI-RGLHPHTLRHTYATHLLEGGMDLRIVQELLGHASIATTQLYTH 298

Query: 301 VNSKNGGDWMMEIYDQTHPSI 321
           ++  +    +   Y   HP  
Sbjct: 299 IDISH----IRSEYLLAHPRA 315


>gi|299536758|ref|ZP_07050066.1| tyrosine recombinase xerC [Lysinibacillus fusiformis ZC1]
 gi|298727770|gb|EFI68337.1| tyrosine recombinase xerC [Lysinibacillus fusiformis ZC1]
          Length = 299

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 91/307 (29%), Positives = 151/307 (49%), Gaps = 15/307 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
              + ++  +++E+  S  T++ YE D   FL FL     +   I  +  + Y   R ++
Sbjct: 7   DALEQFMLYIQVEKNFSVHTVREYESDLLDFLTFL-----QTEGIDDLASVEYIHARLYV 61

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +K   +K    S+ R +S I+SF ++L ++    +    ++ + KK + LP    E++  
Sbjct: 62  TKLYDEKRARASISRKISSIRSFFRFLNRQYGLDDGAFRSLYHPKKESRLPNFFYEEELK 121

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L D      +        RN AIL LLY  G+R+SE  S+  +++    S +R+ GKG 
Sbjct: 122 QLFD-----ANTGDDLKSLRNIAILELLYATGIRVSELTSIQVEDVDFHYSIIRVMGKGR 176

Query: 196 KIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K RI+P       A+ +Y     P  +     L LF  +RG  L P   +  + ++    
Sbjct: 177 KERIIPFGQFASLAMQDYIEQARPRLMKKTNHLQLFVNMRGGELTPRGVRHILNEMIDKA 236

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            L      H LRH+FATHLL+NG DLR++Q +LGH  LS+TQ+YT+V  ++    + + Y
Sbjct: 237 SLHTKIYPHMLRHTFATHLLNNGADLRTVQELLGHSHLSSTQVYTHVTKEH----LRQTY 292

Query: 315 DQTHPSI 321
              HP  
Sbjct: 293 MNAHPRA 299


>gi|77165718|ref|YP_344243.1| tyrosine recombinase XerD [Nitrosococcus oceani ATCC 19707]
 gi|254433312|ref|ZP_05046820.1| tyrosine recombinase XerD [Nitrosococcus oceani AFC27]
 gi|76884032|gb|ABA58713.1| Tyrosine recombinase XerD [Nitrosococcus oceani ATCC 19707]
 gi|207089645|gb|EDZ66916.1| tyrosine recombinase XerD [Nitrosococcus oceani AFC27]
          Length = 305

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 147/305 (48%), Gaps = 16/305 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             + +L  L +E GL++ TL +Y  D  +F  +L       I  Q        ++ A+++
Sbjct: 15  HLERFLNALWLEEGLAENTLAAYRRDLERFSRWLHSQGRTLIGAQ------REDLLAYLA 68

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            R       RS+ RS+S ++ F +YL   KI        + + +    LP +L+E++   
Sbjct: 69  HRLEGGDKSRSVARSVSSLRRFYRYLMGEKIRDNDPSDRVESPRLGRLLPESLSEEEVEA 128

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L     L        +  R+  +L  LY  GLR+SE ++LT   +   Q  + + GKG+K
Sbjct: 129 L-----LAAPKTEDSLGLRDRTMLETLYATGLRVSELVNLTLPQLNPRQGVVYLSGKGNK 183

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R+VPL       +  Y       L    +   LF   RG  ++   F   I++  R  G
Sbjct: 184 ERLVPLGEVALSWLDRYCREARLGLVRSQVNEILFLTRRGGAMSRQAFWYLIKRYARQSG 243

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + +++ 
Sbjct: 244 IQKALSPHTLRHAFATHLLNHGADLRVVQILLGHADLSTTQIYTHV----ARARLQQLHQ 299

Query: 316 QTHPS 320
           Q HP 
Sbjct: 300 QHHPR 304


>gi|330826574|ref|YP_004389877.1| Tyrosine recombinase xerC [Alicycliphilus denitrificans K601]
 gi|329311946|gb|AEB86361.1| Tyrosine recombinase xerC [Alicycliphilus denitrificans K601]
          Length = 299

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 81/310 (26%), Positives = 142/310 (45%), Gaps = 15/310 (4%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            E      ++L  L +E GLS+ TL +Y  D   +  +LA           +   +   +
Sbjct: 3   PESQNAIDSFLDALWLEDGLSRNTLAAYRRDLSLYAGWLAAQQP----PLALDATAEHHL 58

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
             + + R  Q     S  R L+ ++ +  +  + +   +   + +   ++   +P+ L +
Sbjct: 59  SGYFAARHAQTRA-TSANRRLTVLRRYFHWALRERRIAQDPTVRLLAARQPLRVPKTLTQ 117

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            Q   L+     H       +  R+  +L L+Y  GLR+SE ++L    +   +  LRI 
Sbjct: 118 AQVEALL-----HAPDTATALGLRDRTMLELMYASGLRVSELVTLKTFQLGLAEGVLRIT 172

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           GKG K R+VP     R+ +  Y        L       LF   RG  ++  +F   +++ 
Sbjct: 173 GKGGKERLVPFGEEARRWLERYLAEGRGAILAGRQTDDLFVTQRGSAMSRVMFWVIVKKC 232

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  G+    + HTLRH+FATHLL++G DLR +Q +LGH  +STT IYT+V  +     +
Sbjct: 233 AQLAGITAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARER----L 288

Query: 311 MEIYDQTHPS 320
            +++ Q HP 
Sbjct: 289 KQLHAQHHPR 298


>gi|171057831|ref|YP_001790180.1| tyrosine recombinase XerD [Leptothrix cholodnii SP-6]
 gi|170775276|gb|ACB33415.1| tyrosine recombinase XerD [Leptothrix cholodnii SP-6]
          Length = 286

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 87/300 (29%), Positives = 140/300 (46%), Gaps = 16/300 (5%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           +  L +E GLSK TL +Y  D +     L            + Q S   +   I+ R  Q
Sbjct: 1   MDALWLEDGLSKNTLAAYRRDLQGLAAALPAQQS-----AGLLQASEAHLLGVITARHAQ 55

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                +  R L+  K F ++  +  + +    L +   ++   LP  L+E Q   L+   
Sbjct: 56  TRA-STANRRLTVFKRFYRWALREALCSADPTLRLSAARQPKRLPGTLSEAQVEALLAAP 114

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
            L T      +  R+ A+  L+YG GLR+SE +S+    +      L++ GKG K R+VP
Sbjct: 115 ALDTP-----LGLRDRAMFELMYGAGLRVSELVSIRTLQLALVDQVLKVLGKGAKERLVP 169

Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
                R  I  Y     P  L       LF  +R   +   +    +++  R  G+ +  
Sbjct: 170 FGGEARHWIERYLTEARPALLAGRKCDALFVTVRCAGMTRQMAWNLVKKYARQAGITVPL 229

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + HTLRH+FATHLL++G DLR++Q +LGH  +STTQIYT+V  +     + +++ + HP 
Sbjct: 230 SPHTLRHAFATHLLNHGADLRAVQLLLGHADISTTQIYTHVARER----LKQLHARHHPR 285


>gi|78067360|ref|YP_370129.1| site-specific tyrosine recombinase XerD [Burkholderia sp. 383]
 gi|77968105|gb|ABB09485.1| Tyrosine recombinase XerD [Burkholderia sp. 383]
          Length = 316

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 83/301 (27%), Positives = 136/301 (45%), Gaps = 17/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   L +E GL++ TL +Y  D   F  +LA   +       +  +    +  +I+ R  
Sbjct: 31  FCDALWLEHGLARNTLDAYRRDLVLFSQWLAETHD-----APLDSVDEAMVTGYIAARSD 85

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            K    S  R LS  + +  +  +    +    L + + K++   P  L+E Q   L+  
Sbjct: 86  GK--ATSSNRRLSVFRRYYGWAVREHRVSADPTLRITSAKQAARFPSTLSEAQVEALL-- 141

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                      +  R+  +L L+Y  GLR+SE + L    +  ++  +R+ GKG K R+V
Sbjct: 142 ---GAPDIGTPLGLRDRTMLELMYASGLRVSELVMLKTVEVGLNEGVVRVMGKGSKERLV 198

Query: 201 PLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P        I  Y     P  L       LF   RG  +    F   I++  ++  +   
Sbjct: 199 PFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQHAEVRAH 258

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++ Q HP
Sbjct: 259 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LKTLHAQHHP 314

Query: 320 S 320
            
Sbjct: 315 R 315


>gi|160888416|ref|ZP_02069419.1| hypothetical protein BACUNI_00833 [Bacteroides uniformis ATCC 8492]
 gi|156862093|gb|EDO55524.1| hypothetical protein BACUNI_00833 [Bacteroides uniformis ATCC 8492]
          Length = 294

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 76/303 (25%), Positives = 146/303 (48%), Gaps = 13/303 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L  L  ER  SK T++ Y  D  +   F     EE +   T   +    +R +I+  
Sbjct: 5   DSFLDYLLHERNYSKGTVEYYRADILELQRF----GEEMLGDLTPLDVDAELVREWIASL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   ++ R LS ++++ K+L +R       +  +   KK   LP  L E +   L+
Sbjct: 61  MDKGLASNTINRKLSSVRTYYKFLLRRGKVAVDPLRKVTGPKKKKPLPVFLREGEMNRLL 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D++         +   R+  I+ + Y  G+R+SE + L  +++    S +++ GK +K R
Sbjct: 121 DDMDF----GEGFEGCRDHMIIEMFYATGMRLSELIGLDDKDVDFSASLVKVTGKRNKQR 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++P    + +++ EY ++    + +      F    GK L  G+    +++    +    
Sbjct: 177 LIPFDEELGRSMREYVNVRNEAVPVR-SDAFFVRKNGKRLYRGIVACLVKRNLSKVVTVK 235

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FAT +L+NG DL SI+ +LGH  L+TT++YT+   +     + ++Y+Q H
Sbjct: 236 KRSPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEE----LKKVYNQAH 291

Query: 319 PSI 321
           P  
Sbjct: 292 PRA 294


>gi|94986556|ref|YP_594489.1| site-specific recombinase XerC [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94730805|emb|CAJ54167.1| Site-specific recombinase XerC [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 313

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 111/311 (35%), Positives = 167/311 (53%), Gaps = 12/311 (3%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L    + +L  L + +G S  T  +Y  D  QF ++L       +T++    ++   I+
Sbjct: 2   QLPAVTETFLSWLNLHKGFSLATQDAYRRDISQFEVYLRTIG---LTLEHPEHINKKHIQ 58

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F +    +K+   S+ R L+ ++S  +YL K     ++  + + N K+    P  LN  
Sbjct: 59  QFSASLYYKKLTRTSIARKLAALRSLFRYLLKTHHIKDNPAVGVHNPKQHVKYPEILNVD 118

Query: 133 QALTLVD--NVLLHTSHE--TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           Q   L+   N +L TSH      I  RN+A+L LLYG GLRISEAL L   +I  +   +
Sbjct: 119 QVFLLLKGANNILKTSHTGLELAIAHRNNALLELLYGSGLRISEALCLNVSDIRTEDGFV 178

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R+ GKG+K R+ PL  +   A+ E+  +      L  Q  LF G+RGK L+     R + 
Sbjct: 179 RVIGKGNKERLAPLSDTSIVALEEWLAIRHMVATLGEQ-ALFVGVRGKRLHRRQTIRILE 237

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L    GLPL+T  HTLRHSFATHLL  G +LR++Q +LGH RLSTTQ YT++      D
Sbjct: 238 ELCLQAGLPLTTAPHTLRHSFATHLLEGGANLRAVQELLGHARLSTTQRYTHIT----LD 293

Query: 309 WMMEIYDQTHP 319
            +++ YD+ HP
Sbjct: 294 KLIQAYDKAHP 304


>gi|300703191|ref|YP_003744793.1| site-specific tyrosine recombinase [Ralstonia solanacearum
           CFBP2957]
 gi|299070854|emb|CBJ42155.1| site-specific tyrosine recombinase [Ralstonia solanacearum
           CFBP2957]
          Length = 308

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 79/307 (25%), Positives = 135/307 (43%), Gaps = 18/307 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  Q +   L +E GL++ TL +Y  D   +  +LA         + I Q    ++  + 
Sbjct: 17  EAIQRFCDALWLEDGLARNTLDAYRRDLTLYAQWLAGRG------KAIDQTEDDDLADYF 70

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           + R        +  R  +  K F ++  +  +        +   K+   +P+ L+E Q  
Sbjct: 71  AARHEASRA-STANRRRTVFKRFFQWALREHVVGADPSRLLSTAKQPPRIPKTLSEAQVE 129

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KG 194
            L+             +  R+ A++ L+Y  GLR+SE ++L    +  ++  +R+ G KG
Sbjct: 130 ALI-----AAPDVDTPLGLRDRAMIELMYASGLRVSEIVALKSVEVGLNEGVVRVIGGKG 184

Query: 195 DKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            K R+VP        +  Y        L       LF   RG  +    F   I++    
Sbjct: 185 GKDRLVPFGAEAGDWLRRYLRDGRTALLGKRTADALFVTARGDGMTRQAFWHLIKRYALR 244

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  +
Sbjct: 245 ADIHAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARER----LRTL 300

Query: 314 YDQTHPS 320
           + Q HP 
Sbjct: 301 HAQHHPR 307


>gi|323524461|ref|YP_004226614.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1001]
 gi|323381463|gb|ADX53554.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1001]
          Length = 307

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 87/317 (27%), Positives = 159/317 (50%), Gaps = 29/317 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L NLE ER LS  TL+ Y  +  +  +            + ++ L+  +IR  +++  
Sbjct: 9   AYLSNLEHERRLSAHTLRGYAHELDELRLLTKG--------RPLQSLTAVDIRGAVARAH 60

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +  RS+   LS  ++F ++L  R     + +  +R  K++ +LP+AL+   A  L++
Sbjct: 61  AGGLTARSISHRLSAWRAFYRWLAGRVDLPANPVATVRAPKQAKALPKALSVDDANRLME 120

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-----------DDQSTL 188
           +    ++        R+ A+L L Y  GLR+SE + L  +               D + +
Sbjct: 121 SPPAASAE-----GLRDHAMLELFYSSGLRLSELVGLDVRFADVDGHRSAGWLKLDSAEV 175

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG++ RIVP+     +A+  +  +    +  +   PLF   RG  L+P V +  ++
Sbjct: 176 EVLGKGNQRRIVPVGSKALEALNAWLAVRDEMVKHDPH-PLFLSARGNRLSPNVVRERVK 234

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     G+P +   H LRHSFATH+L + GDLR++Q +LGH  ++ TQ+YT ++ ++   
Sbjct: 235 RAALVAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTGLDFQH--- 291

Query: 309 WMMEIYDQTHPSITQKD 325
            +  +YDQ HP   ++D
Sbjct: 292 -LAHVYDQAHPRAKKRD 307


>gi|120610000|ref|YP_969678.1| tyrosine recombinase XerD [Acidovorax citrulli AAC00-1]
 gi|120588464|gb|ABM31904.1| tyrosine recombinase XerD [Acidovorax citrulli AAC00-1]
          Length = 309

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 80/315 (25%), Positives = 148/315 (46%), Gaps = 13/315 (4%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P  +S         ++  L +E GLS+ TL +Y  D   +  +L  +  +   +      
Sbjct: 6   PMTLSPGSQAAIDAFVDTLWLEDGLSRNTLAAYRRDLALYAQWLGEHVPDTAGMLDATM- 64

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
               ++A+ + R  Q     S  R L+ ++ + ++  + +       + ++  ++   +P
Sbjct: 65  -EHHLQAYFAARHAQTRA-TSANRRLTVLRRYFQWALRERRIAIDPTVRLQAARQPLRVP 122

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L+  Q   L+      +   +  +  R+ A+L L+Y  GLR++E ++L   +    + 
Sbjct: 123 KTLSAAQVEALL-----QSPDTSTALGLRDRAMLELMYASGLRVTELVTLKTYHAGLAEG 177

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQR 245
            LR+ GKG K R+VP      + +  Y D    D L       LF   RG  +   +F  
Sbjct: 178 VLRVMGKGSKERLVPFGEVAAQWLQRYLDHARADILAGQRTDDLFVTRRGAGMTRAMFWV 237

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +++  +  G+ +  + HTLRH+FATHLL++G DLR +Q +LGH  +STT IYT+V  + 
Sbjct: 238 VVKKHAQSAGIHVPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARER 297

Query: 306 GGDWMMEIYDQTHPS 320
               +  ++ Q HP 
Sbjct: 298 ----LKALHAQHHPR 308


>gi|262406148|ref|ZP_06082698.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_22]
 gi|294644043|ref|ZP_06721820.1| tyrosine recombinase XerC [Bacteroides ovatus SD CC 2a]
 gi|294810195|ref|ZP_06768862.1| tyrosine recombinase XerC [Bacteroides xylanisolvens SD CC 1b]
 gi|298483048|ref|ZP_07001229.1| tyrosine recombinase XerC [Bacteroides sp. D22]
 gi|262357023|gb|EEZ06113.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_22]
 gi|292640567|gb|EFF58808.1| tyrosine recombinase XerC [Bacteroides ovatus SD CC 2a]
 gi|294442607|gb|EFG11407.1| tyrosine recombinase XerC [Bacteroides xylanisolvens SD CC 1b]
 gi|298270792|gb|EFI12372.1| tyrosine recombinase XerC [Bacteroides sp. D22]
          Length = 293

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 75/304 (24%), Positives = 146/304 (48%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L  L+ ER  S+ T+ +Y  D +Q   F     +E+       ++    IR +I  
Sbjct: 3   IESFLDYLQYERNYSEKTVLAYGEDIKQLQEF----AQEEYGKFNPLEVEAELIREWIVS 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S+ R LS +++F KYL ++  TT   +  ++  K    LP  L E +   L
Sbjct: 59  LMDKGYTSTSVNRKLSSLRTFYKYLLRQGETTIDPLRKIKGPKNKKPLPVFLKENEMNRL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D     T     +   R+  I+ + Y  G+R+SE + L  +++    S L++ GK +K 
Sbjct: 119 LD----ETDFGEGFKGCRDRLIIEMFYATGMRLSELIGLDNKDVDFSASLLKVTGKRNKQ 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R++P    +++ +LEY ++    +    +   F    G+ L   +    +++    +   
Sbjct: 175 RLIPFGDELQELMLEYINVRNETIPERSE-AFFIRENGERLYKNLVYNLVKRNLSKVATL 233

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FAT +L+N  +L +++ +LGH  ++TT+IYT+   +     + ++Y Q 
Sbjct: 234 KKKSPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIYTHATFEE----LKKVYKQA 289

Query: 318 HPSI 321
           HP  
Sbjct: 290 HPRA 293


>gi|313123911|ref|YP_004034170.1| tyrosine recombinase xerc [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280474|gb|ADQ61193.1| Tyrosine recombinase xerC [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 295

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L+ ER  S  T+ +Y+ D      F     +E        Q+S  ++  ++   
Sbjct: 5   EQFLSYLKNERSYSPKTVLAYQKDLAAAKKFW----QENGGFPGWDQISRRDLEIYLLA- 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             QK+   +L R LS +KSF + L +R +      + ++  +    LP    + +   ++
Sbjct: 60  TGQKLASSTLSRKLSSLKSFYRLLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQVI 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                 + ++ K +  RN AI+ L Y  G+R+SE   L  + +  +   + + GKG+K R
Sbjct: 120 -----RSLNDGKPLTVRNRAIVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDR 174

Query: 199 IVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            V      +K + EY       L  N      +F    G+P++     + ++Q+ +  GL
Sbjct: 175 YVFFDQESKKYLEEYLQAARPSLLKNEPDTEAVFLNKLGRPISSRGIAKAVQQIFQKAGL 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT+V+ ++    +   Y Q
Sbjct: 235 TAGAHPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQH----LTAEYRQ 290

Query: 317 THPS 320
             P 
Sbjct: 291 HFPR 294


>gi|291287439|ref|YP_003504255.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290884599|gb|ADD68299.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 295

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 147/305 (48%), Gaps = 19/305 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N+   ++ E GL++ ++++Y  D   ++ F         T++ + +    E+ A+++  R
Sbjct: 9   NFTNWMQYEMGLAENSVKAYHQDIENYIAF---------TLKPLVECGAQELVAYMTHLR 59

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  +++R +SGI  F  +L   KI + + +  +    K   LP  LN  +   L+ 
Sbjct: 60  KSGASIETVQRRISGISRFYDFLIMEKIISSNPVGFVSKPSKWEKLPVFLNFDEVEKLI- 118

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
               ++   +  +  R+  I   +Y  G+RISE + L   ++   +  +++ GKG K R 
Sbjct: 119 ----NSPDMSSGLGYRDRIIFETMYSTGMRISELVGLKVLDMDMHREIMKVTGKGSKQRF 174

Query: 200 VPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+  S+ + +  Y D+    L     +  LF    GK L+       I++     G+  
Sbjct: 175 VPMYGSLAEKMKTYLDIRHDSLVKERDEGWLFLSRNGKKLDREYVWMIIKKYCERAGIKK 234

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + + HTLRHSFATHLL+NG DLR+IQ +LGH  LSTT+ YT V      + ++      H
Sbjct: 235 NVSPHTLRHSFATHLLTNGADLRTIQVLLGHVDLSTTERYTQVTDNKARNTLL----NCH 290

Query: 319 PSITQ 323
           P   +
Sbjct: 291 PRFRK 295


>gi|319761793|ref|YP_004125730.1| tyrosine recombinase xerd [Alicycliphilus denitrificans BC]
 gi|317116354|gb|ADU98842.1| tyrosine recombinase XerD [Alicycliphilus denitrificans BC]
          Length = 299

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 81/310 (26%), Positives = 142/310 (45%), Gaps = 15/310 (4%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            E      ++L  L +E GLS+ TL +Y  D   +  +LA           +   +   +
Sbjct: 3   PESQNAIDSFLDALWLEDGLSRNTLAAYRRDLSLYAGWLAAQQP----PLALDATAEHHL 58

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
             + + R  Q     S  R L+ ++ +  +  + +   +   + +   ++   +P+ L +
Sbjct: 59  SGYFAARHAQTRA-TSANRRLTVLRRYFHWALRERRIAQDPTVRLLAARQPLRVPKTLTQ 117

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            Q   L+     H       +  R+  +L L+Y  GLR+SE ++L    +   +  LRI 
Sbjct: 118 AQVEALL-----HAPDTATALGLRDRTMLELMYASGLRVSELVTLKTFQLGLTEGVLRIT 172

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           GKG K R+VP     R+ +  Y        L       LF   RG  ++  +F   +++ 
Sbjct: 173 GKGGKERLVPFGEEARRWLERYLAEGRGAILAGRQTDDLFVTQRGSAMSRVMFWVIVKKC 232

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  G+    + HTLRH+FATHLL++G DLR +Q +LGH  +STT IYT+V  +     +
Sbjct: 233 AQLAGITAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARER----L 288

Query: 311 MEIYDQTHPS 320
            +++ Q HP 
Sbjct: 289 KQLHAQHHPR 298


>gi|58039205|ref|YP_191169.1| site-specific tyrosine recombinase XerC [Gluconobacter oxydans
           621H]
 gi|58001619|gb|AAW60513.1| Site-specific recombinase, integrase/recombinase RipX, XerC
           [Gluconobacter oxydans 621H]
          Length = 321

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 113/322 (35%), Positives = 168/322 (52%), Gaps = 21/322 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   ++W + L  ER  S  T+++Y  D    L F   +   ++T+  + +LS  ++RA+
Sbjct: 8   LDALRDWTEWLTHERRASPRTVEAYRHDVLLALTFFQQHLGAEVTLADLGKLSLADLRAW 67

Query: 75  ISKRRTQKIGD-----------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           ++    +               RS  R +S ++SF +YL  R   +      +   +   
Sbjct: 68  LAHETARSEQPTRRPTSADSRARSRARHVSALRSFFRYLGLRHDLSNPAPSLLATPRTKK 127

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IM 182
            LPR L E  A    +   +    ET     R+ A+  LLYG GLRI EALSL  ++   
Sbjct: 128 RLPRPLGEDAARAAAEG--ISDDAETSLAALRDRALFTLLYGTGLRIGEALSLDIRDLTN 185

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
             Q+ LR+ GKG K R+VPLLP+V +A+  +    P   +     PLF G+RG  LNPGV
Sbjct: 186 AGQNMLRVVGKGGKERLVPLLPAVMEALESWKAAHP---SPTPDAPLFCGVRGGRLNPGV 242

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            QR +R  R+  GLP S T H LRHSFATHL+  G DLR+IQ ++GH  LSTTQ YT  +
Sbjct: 243 AQRAMRTWRKGEGLPDSATPHALRHSFATHLMEGGADLRTIQELMGHASLSTTQAYTLAD 302

Query: 303 SKNGGDWMMEIYDQTHPSITQK 324
            K+    +++++ + HP   Q+
Sbjct: 303 EKH----LLDVWRKAHPRAGQE 320


>gi|317477767|ref|ZP_07936960.1| tyrosine recombinase XerC [Bacteroides sp. 4_1_36]
 gi|316906112|gb|EFV27873.1| tyrosine recombinase XerC [Bacteroides sp. 4_1_36]
          Length = 294

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 76/303 (25%), Positives = 146/303 (48%), Gaps = 13/303 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L  L  ER  SK T++ Y  D  +   F     EE +   T   +    +R +I+  
Sbjct: 5   DSFLDYLLHERNYSKGTVEYYRADILELQRF----GEEMLGDLTPLDVDAELVREWIASL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   ++ R LS ++++ K+L +R       +  +   KK   LP  L E +   L+
Sbjct: 61  MGKGLASNTINRKLSSVRTYYKFLLRRGKVAVDPLRKVTGPKKKKPLPVFLREGEMNRLL 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D++         +   R+  I+ + Y  G+R+SE + L  +++    S +++ GK +K R
Sbjct: 121 DDMDF----GEGFEGCRDHMIIEMFYATGMRLSELIGLDDKDVDFSASLVKVTGKRNKQR 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++P    + +++ EY ++    + +      F    GK L  G+    +++    +    
Sbjct: 177 LIPFDEELGRSMREYVNVRNEAVPVR-SDAFFVRKNGKRLYRGIVACLVKRNLSKVVTVK 235

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FAT +L+NG DL SI+ +LGH  L+TT++YT+   +     + ++Y+Q H
Sbjct: 236 KRSPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEE----LKKVYNQAH 291

Query: 319 PSI 321
           P  
Sbjct: 292 PRA 294


>gi|255004532|ref|ZP_05279333.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str.
           Virginia]
          Length = 311

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 113/320 (35%), Positives = 170/320 (53%), Gaps = 15/320 (4%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLI-FLAFYTEEKITIQTIRQLS 67
           + S +LL    NWL  L  ER  S  T+ +YE D   F         E  +++Q +++L 
Sbjct: 1   MGSGDLLSAINNWLCWLREERRYSPNTVAAYERDIMDFYRSVCGEPCERSVSLQEVQELR 60

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
             E R++++ R  Q     S  R++S ++SF +YL  +     S + N +      SLP+
Sbjct: 61  SAEFRSWLADRFKQGKQSASNARAISVVRSFFRYLHHKCGMKSSVVFNTK-PIVRRSLPK 119

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L E Q   +++        +  W   R+ A+  LLYGCGLRISEA+++        Q  
Sbjct: 120 VLEEPQMRKVMEE-----PEDLHWTHRRDLAVSALLYGCGLRISEAVNIKF--CDLRQDE 172

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQR 245
           LR+ GKG K R++P+LP VR  I EY   CP       +    +F G+RG  L+   F  
Sbjct: 173 LRVLGKGSKERVIPILPWVRCIIDEYVASCPHQRVHGASSTEYVFVGLRGGRLSRTYFAY 232

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            ++ LRR +GLP +TT HTLRHSFATHL   G D+R +Q +LGH  L+TTQ+YT+++   
Sbjct: 233 RMKGLRRRIGLPETTTPHTLRHSFATHLFLEGADIRVVQELLGHASLATTQVYTHLD--- 289

Query: 306 GGDWMMEIYDQTHPSITQKD 325
             + ++E Y   HP   +K+
Sbjct: 290 -YNSVIENYRGFHPQTIKKN 308


>gi|114570821|ref|YP_757501.1| phage integrase family protein [Maricaulis maris MCS10]
 gi|114341283|gb|ABI66563.1| phage integrase family protein [Maricaulis maris MCS10]
          Length = 321

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 88/319 (27%), Positives = 140/319 (43%), Gaps = 25/319 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  +  ERG S  TL +Y  D       L+    E  T   +  +        ++ 
Sbjct: 16  IELFLDMMAAERGASPNTLDAYRRDLVDVAARLSSRNLEAATTPDLEHV--------LAS 67

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +   +  R LS IK F ++L    +  ++    +R  K+   LP+ L E     L
Sbjct: 68  MAADGLAASTAARRLSAIKRFYRFLLSDGVREDNPATPLRAPKQGRPLPKILTEDDVDRL 127

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            D      S  +     R  A++ LLY  GLR++E +SL     +  +  ++I GKG + 
Sbjct: 128 FD----AASGLSGPAGLRTRALMELLYAGGLRVTELVSLPLGAFVRAERCIQITGKGGRE 183

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQL------PLFRGI--RGKPLNPGVFQRYIRQ 249
           R+VPL  +  +A+  Y  +    L ++          LF     +   L    F + + +
Sbjct: 184 RLVPLTEAALEAVAAYKVVREAHLPVDRTKSGKAARYLFPSRTAKTGHLTRERFAQILSE 243

Query: 250 LRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           L    GL P   + H LRH+FATHLL+ G DLRS+Q +LGH  +STTQIYT+V  +    
Sbjct: 244 LTLAAGLDPAKVSPHVLRHAFATHLLARGADLRSVQILLGHADVSTTQIYTHVLDER--- 300

Query: 309 WMMEIYDQTHPSITQKDKK 327
            +  +    HP   + D  
Sbjct: 301 -LKSLVQSAHPLARRTDDD 318


>gi|329724319|gb|EGG60831.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU144]
          Length = 296

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 80/311 (25%), Positives = 153/311 (49%), Gaps = 18/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + K ++ +L  L++ER  S+ TL+SY  D  QF  FL     +      +    Y + R 
Sbjct: 1   MDKIQETFLYMLKVERNFSEYTLKSYHDDLVQFNNFLEREHLQ------LETFEYKDARN 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++   + ++   ++ R +S +++F ++   +  +  +  + + + KK   LP+   E++
Sbjct: 55  YLAFLYSNQLKRTTVSRKISTLRTFYEFWMTQDNSIINPFVQLVHPKKEKYLPQFFYEEE 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L       T         R+  I+ LLY  G+R+SE +++  ++I  +   +++ GK
Sbjct: 115 MEALF-----QTVEHDNKKGIRDKVIIELLYATGIRVSELINIKLKDIDMNLPGVKVLGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R +P     R++I  Y +       L     L   ++G P+     +  +  + + 
Sbjct: 170 GNKERFIPFGEFCRQSIERYLEE-FQPKQLANHDYLIVNMKGDPITERGVRYVLNDVVKR 228

Query: 254 -LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+      H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++     + +
Sbjct: 229 TAGVN-DIHPHKLRHTFATHLLNQGADLRTVQSLLGHANLSTTGRYTHVSNQQ----LRK 283

Query: 313 IYDQTHPSITQ 323
           +Y   HP   +
Sbjct: 284 VYLNAHPRAKK 294


>gi|325954400|ref|YP_004238060.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922]
 gi|323437018|gb|ADX67482.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922]
          Length = 294

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 153/305 (50%), Gaps = 21/305 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +   L++E+ ++  T++SY  D ++   F     +E          +Y  +  F+    
Sbjct: 9   EYQTYLKLEKHMANNTIESYMRDIKKLQQFSPLLPQEH---------TYDSLVEFVHAMA 59

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +    RS  R LSG+KS+  YL+  +I  ++    + + K    LP  L EK+   LVD
Sbjct: 60  KE-YSQRSQARILSGLKSYFNYLQYEEIRQDNPTELLESPKIGTKLPDVLTEKEIDRLVD 118

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            + L      +     N AI+ +LYGCGLR++E ++L   ++  ++  +R+ GKG+K R+
Sbjct: 119 VIDLSKPEGER-----NRAIIEMLYGCGLRVTELVNLRISDLFFEEGYIRVLGKGNKERL 173

Query: 200 VPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           VP+ P   K I  Y +       +    +  LF   RG+ +   +    I++L    G+ 
Sbjct: 174 VPISPYTIKYIDLYRNEIRKHQPIQPGYEDILFLNRRGRNITRVMIFTIIKELSIIAGIQ 233

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + + HT RHSFATHLL NG DLR+IQ +LGH  + TT++YT+++ ++    + E     
Sbjct: 234 KNISPHTFRHSFATHLLKNGADLRAIQQMLGHENIVTTEVYTHIDQEH----LREAILNH 289

Query: 318 HPSIT 322
           HP   
Sbjct: 290 HPRNK 294


>gi|300783889|ref|YP_003764180.1| integrase/recombinase XerC [Amycolatopsis mediterranei U32]
 gi|299793403|gb|ADJ43778.1| integrase/recombinase XerC [Amycolatopsis mediterranei U32]
          Length = 326

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 87/322 (27%), Positives = 148/322 (45%), Gaps = 20/322 (6%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
            LPE V   +      + ++L +ERGLS  T+++Y  D    L F+     E      + 
Sbjct: 20  ALPEPVRAVVTA----YERHLGLERGLSAHTVRAYVGDAVSLLGFVVDGGSE------VA 69

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           +L    +RA+++ +++      +L R  +  ++F  +  +  +        +   +   +
Sbjct: 70  ELDLARLRAWLAAQQSGGASRTTLARRAASARTFTAWAHRTGVLATDPGGRLAAPRAHRT 129

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   QA  ++       +     +  R+ AI+ LLY  G+R+SE   L        
Sbjct: 130 LPGVLRAGQAGEVMQASAAGAAQR-DPVALRDRAIVELLYATGIRVSELCGLDVGEADFS 188

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-----NLNIQLPLFRGIRGKPLN 239
           +  + + GKG K R+VP      +A+ ++ D     +       + +  LF G+RGK ++
Sbjct: 189 RRVVTVLGKGGKERVVPFGVPAAEALADWIDEGRPKIITESGGESAEAALFLGVRGKRVD 248

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           P   +R +      +   L    H LRHS ATHLL  G DLRS+Q +LGH  L+TTQ+YT
Sbjct: 249 PRAVRRVVHDAVTAVPGALDMGPHGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYT 308

Query: 300 NVNSKNGGDWMMEIYDQTHPSI 321
           +V      D +  I+D+ HP  
Sbjct: 309 HVT----VDRLKAIHDRAHPRA 326


>gi|167835679|ref|ZP_02462562.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis
           MSMB43]
          Length = 320

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 84/301 (27%), Positives = 137/301 (45%), Gaps = 17/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   + +E GLS+ TL +Y  D + F  +LA          ++ +     +  +I+ R  
Sbjct: 35  FCDAMWLEHGLSRNTLDAYRRDLQLFAQWLAARH-----AASLDRAERPMLEGYIAARSD 89

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            K    S  R LS  + +  +  +   T     L + + K++   P  L+E Q   L   
Sbjct: 90  GK--ATSSNRRLSVFRRYYGWAVREHRTAVDPTLRIASAKQAPRFPSTLSEAQVEAL--- 144

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L        +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+V
Sbjct: 145 --LAAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLV 202

Query: 201 PLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P        I  Y     P  L       LF   RG  +    F   I++  +   + + 
Sbjct: 203 PFGEVAHGWIERYLRGARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVH 262

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++   HP
Sbjct: 263 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LKMLHAANHP 318

Query: 320 S 320
            
Sbjct: 319 R 319


>gi|326771762|ref|ZP_08231047.1| site-specific recombinase, phage integrase family [Actinomyces
           viscosus C505]
 gi|326637895|gb|EGE38796.1| site-specific recombinase, phage integrase family [Actinomyces
           viscosus C505]
          Length = 307

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 141/305 (46%), Gaps = 7/305 (2%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRAFIS 76
             ++   L ++R LS  T+++Y  D    L FL     +   +   +  L   ++R +++
Sbjct: 9   LDSYRSYLALQRDLSGHTVRAYLVDINDLLSFLGVGEGDAEPVDAALATLDLADLRDWLA 68

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                     +L R  + +++F  +  +  + T      +R  +  N LP  L  +QA  
Sbjct: 69  AMAASGHSRATLARRSASVRTFSSWAFETGLLTSDVAARLRAPRVDNRLPGVLTTQQASQ 128

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+       S     +  R+ AI+  LY  G+R+SE + L   ++   Q TLR+ GKG K
Sbjct: 129 LLKTASDLASDG-HVLAVRDLAIIETLYATGVRVSELVGLDVADLDHSQRTLRVLGKGRK 187

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R VP      KA+  +         ++    LF G RG+ ++P   +  + +L     +
Sbjct: 188 ERTVPYGLPAAKALETWLHRRGEICAVDAGGALFLGARGRRIDPRAVRDVVHRLCAAAQV 247

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           P     H LRHS ATH+L  G DLRS+Q  LGH  L+TTQ YT+V+++     +  +Y+Q
Sbjct: 248 P-DLGPHGLRHSTATHVLGGGADLRSVQEFLGHSSLATTQRYTHVSAER----LRSVYEQ 302

Query: 317 THPSI 321
             P  
Sbjct: 303 AFPRA 307


>gi|57651821|ref|YP_186127.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus COL]
 gi|87162376|ref|YP_493842.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194960|ref|YP_499760.1| site-specific recombinase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|151221374|ref|YP_001332196.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|161509418|ref|YP_001575077.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142042|ref|ZP_03566535.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253731871|ref|ZP_04866036.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733510|ref|ZP_04867675.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|258452551|ref|ZP_05700557.1| tyrosine recombinase xerC [Staphylococcus aureus A5948]
 gi|262048146|ref|ZP_06021033.1| hypothetical protein SAD30_1922 [Staphylococcus aureus D30]
 gi|262051314|ref|ZP_06023537.1| hypothetical protein SA930_2036 [Staphylococcus aureus 930918-3]
 gi|282920496|ref|ZP_06328217.1| tyrosine recombinase XerC [Staphylococcus aureus A9765]
 gi|284024245|ref|ZP_06378643.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 132]
 gi|294848247|ref|ZP_06788994.1| tyrosine recombinase XerC [Staphylococcus aureus A9754]
 gi|304381184|ref|ZP_07363837.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|81694641|sp|Q5HGI0|XERC_STAAC RecName: Full=Tyrosine recombinase xerC
 gi|123003475|sp|Q2FZ30|XERC_STAA8 RecName: Full=Tyrosine recombinase xerC
 gi|123486192|sp|Q2FHI6|XERC_STAA3 RecName: Full=Tyrosine recombinase xerC
 gi|172048862|sp|A6QGF2|XERC_STAAE RecName: Full=Tyrosine recombinase xerC
 gi|189030085|sp|A8Z3T2|XERC_STAAT RecName: Full=Tyrosine recombinase xerC
 gi|57286007|gb|AAW38101.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus COL]
 gi|87128350|gb|ABD22864.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202518|gb|ABD30328.1| site-specific recombinase, putative [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150374174|dbj|BAF67434.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|160368227|gb|ABX29198.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253724281|gb|EES93010.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728564|gb|EES97293.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257859769|gb|EEV82611.1| tyrosine recombinase xerC [Staphylococcus aureus A5948]
 gi|259160689|gb|EEW45710.1| hypothetical protein SA930_2036 [Staphylococcus aureus 930918-3]
 gi|259163712|gb|EEW48267.1| hypothetical protein SAD30_1922 [Staphylococcus aureus D30]
 gi|269940743|emb|CBI49125.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282594158|gb|EFB99145.1| tyrosine recombinase XerC [Staphylococcus aureus A9765]
 gi|294825047|gb|EFG41469.1| tyrosine recombinase XerC [Staphylococcus aureus A9754]
 gi|302751075|gb|ADL65252.1| site-specific recombinase XerC [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340167|gb|EFM06108.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|315198492|gb|EFU28821.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140931|gb|EFW32778.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144353|gb|EFW36119.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329313922|gb|AEB88335.1| Tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329727838|gb|EGG64289.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           21189]
          Length = 298

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 85/309 (27%), Positives = 150/309 (48%), Gaps = 16/309 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +  +L  L++ER  S+ TL+SY+ D  QF  FL     E      +    Y + R ++S 
Sbjct: 5   QDAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLE------LNTFEYRDARNYLSY 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             +  +   S+ R +S +++F +Y         +  + + + KK   LP+   E++   L
Sbjct: 59  LYSNHLKRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEAL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                  T  E    + R+  IL LLY  G+R+SE +++  Q+I    + + + GKG K 
Sbjct: 119 F-----KTVEEDTSKNLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R VP     R++I  Y +      + N    L   ++G+ +     +  +  + +     
Sbjct: 174 RFVPFGAYCRQSIENYLEHFKPIQSCNHDF-LIVNMKGEAITERGVRYVLNDIVKRTAGV 232

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++     + ++Y   
Sbjct: 233 SEIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ----LRKVYLNA 288

Query: 318 HPSITQKDK 326
           HP   ++++
Sbjct: 289 HPRAKKENE 297


>gi|312112853|ref|YP_004010449.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311217982|gb|ADP69350.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 344

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 122/314 (38%), Positives = 171/314 (54%), Gaps = 8/314 (2%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            + ++      WL  L      +  TL++YE D+RQFL  LA      +T+  +  L+  
Sbjct: 37  TAPDVRDAVAGWLAYLRDAHRYADNTLEAYERDSRQFLAHLAGKDARPVTLARLNALTPH 96

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           + R+F++ RR      RSL R+LS ++S  + L++       +IL +   K    LP+ +
Sbjct: 97  DFRSFLADRRDDGAQSRSLSRTLSALRSLFRTLERTGALQNRSILAVALPKLPPRLPKPV 156

Query: 130 NEKQALTLVDNVLLHTS-HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QST 187
            E +A  +VD   L        W  ARN A+L LLYG GLRISEAL L  ++     +  
Sbjct: 157 TEAKAKEVVDEAALDGELSAHPWTGARNQAVLLLLYGSGLRISEALGLNRKDAPLGPRDV 216

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           LRI+GKG + R+ P+LP  + AI +Y + CP  L    Q PLF G++G  LNP + Q  +
Sbjct: 217 LRIRGKGGRERLAPVLPVAQTAIADYIEQCPHKLE--PQGPLFVGVKGGRLNPRIVQLLL 274

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +LR  L LP + T H LRHSFATHLLS G DLR IQ +LGH  LSTTQ YT V+     
Sbjct: 275 ARLRTNLALPATATPHALRHSFATHLLSRGADLRVIQELLGHASLSTTQGYTAVD----R 330

Query: 308 DWMMEIYDQTHPSI 321
           D + + Y + HP  
Sbjct: 331 DRLFQAYSKAHPRA 344


>gi|119961787|ref|YP_948168.1| tyrosine recombinase XerC [Arthrobacter aurescens TC1]
 gi|119948646|gb|ABM07557.1| putative tyrosine recombinase XerC [Arthrobacter aurescens TC1]
          Length = 311

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 93/315 (29%), Positives = 156/315 (49%), Gaps = 11/315 (3%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           +++   L K    + + LE E   S  T+++Y  D    L F       +  +Q +RQL 
Sbjct: 7   QLLPGPLQKAVDGFRRYLEGECARSAHTVRAYLSDVESLLGFAV-----QEGVQELRQLE 61

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
              +R ++  +    +   +L R  +  +SF  +  + ++      + ++  K+  SLP 
Sbjct: 62  LGSLRRWLGAQSEAGMARATLARRAATARSFTGWALREELIETDPAVRLQAPKRDKSLPG 121

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L ++Q   +VD+ L   + +   +  RN A++ LLY  G+R+ E   L   ++  D+ T
Sbjct: 122 VLQQQQVSRMVDD-LNTAAADGGPMALRNRAMVELLYATGVRVGELAGLDIDDLDPDRRT 180

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRY 246
           +R+ GKG+K R VP       A+ ++       +      P LF G+RG  ++P   +  
Sbjct: 181 VRVLGKGNKERTVPFGVPAAVAVDDWLRRGRPAVVGATSGPALFLGVRGNRVDPRQIRAV 240

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           + +L + LG   +T  H LRHS ATHLL  G DLR++Q ILGH  L+TTQIYT+V+    
Sbjct: 241 VSELLQALGDTSATGPHALRHSAATHLLDGGADLRAVQEILGHSSLATTQIYTHVS---- 296

Query: 307 GDWMMEIYDQTHPSI 321
            D + + Y Q HP  
Sbjct: 297 VDRLRKSYQQAHPRA 311


>gi|127511259|ref|YP_001092456.1| tyrosine recombinase XerC [Shewanella loihica PV-4]
 gi|126636554|gb|ABO22197.1| tyrosine recombinase XerC [Shewanella loihica PV-4]
          Length = 297

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 85/309 (27%), Positives = 149/309 (48%), Gaps = 19/309 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
              Q ++  L  ER LS  T+++Y  +  +    L              ++S  +++A +
Sbjct: 4   DWVQEFVSYLVSERQLSPHTVRNYRFELERVGELLPENFI-------WAEVSDEQLQAVL 56

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +K   + +G RS+  +LS +K F  YL +     +   LN+   K+   LP+ ++     
Sbjct: 57  NKLHRKGLGPRSIALTLSALKQFCHYLLQEGYIKKDPCLNLSAPKQQKPLPKNMDLDSVT 116

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+      +      +  R+ AI+ L Y  GLR++E  +L  ++I   +  +++ GKG 
Sbjct: 117 HLL------SIEGDDALALRDKAIMELFYSSGLRLAELAALDTRDIASGEHQVKVMGKGS 170

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RIVP+      AI ++  +    L       LF   +GK L     Q  + +  +  G
Sbjct: 171 KERIVPIGRMALSAIDDWLKVR--SLLPCEDDALFVTAKGKRLAHRSIQARLNKWGQLQG 228

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L      H LRHSFATH+L +  DLR++Q +LGH  LSTTQ+YT+++ ++    + ++YD
Sbjct: 229 LNARVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQVYTSLDFQH----LAKVYD 284

Query: 316 QTHPSITQK 324
             HP   ++
Sbjct: 285 GAHPRAKKR 293


>gi|21282864|ref|NP_645952.1| hypothetical protein MW1135 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486091|ref|YP_043312.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|297208102|ref|ZP_06924533.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300912183|ref|ZP_07129626.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|34222912|sp|Q8NWZ8|XERC_STAAW RecName: Full=Tyrosine recombinase xerC
 gi|81649416|sp|Q6G9W1|XERC_STAAS RecName: Full=Tyrosine recombinase xerC
 gi|21204303|dbj|BAB95000.1| xerC [Staphylococcus aureus subsp. aureus MW2]
 gi|49244534|emb|CAG42963.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296887345|gb|EFH26247.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300886429|gb|EFK81631.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           TCH70]
          Length = 298

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 84/309 (27%), Positives = 151/309 (48%), Gaps = 16/309 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +L  L++ER  S+ TL+SY+ D  QF  FL     +      ++   Y + R ++S 
Sbjct: 5   QEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLQ------LKTFEYRDARNYLSY 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             +  +   S+ R +S +++F +Y         +  + + + KK   LP+   E++   L
Sbjct: 59  LYSNHLKRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEAL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                  T  E      R+  IL LLY  G+R+SE +++  Q+I    + + + GKG K 
Sbjct: 119 F-----KTVEEDTSKSLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R VP     R++I  Y +      + N    L   ++G+ +     +  +  + +     
Sbjct: 174 RFVPFGAYCRQSIENYLEHFKPIQSCNHDF-LIVNMKGEAITERGVRYVLNDIVKRTAGV 232

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++     + ++Y   
Sbjct: 233 SEIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ----LRKVYLNA 288

Query: 318 HPSITQKDK 326
           HP   ++++
Sbjct: 289 HPRAKKENE 297


>gi|295085443|emb|CBK66966.1| tyrosine recombinase XerC subunit [Bacteroides xylanisolvens XB1A]
          Length = 293

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 75/304 (24%), Positives = 145/304 (47%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L  L+ ER  S+ T+ +Y  D +Q   F     +E+       ++    IR +I  
Sbjct: 3   IESFLDYLQYERNYSEKTVLAYGEDIKQLQEF----AQEEYGKFNPLEVEAELIREWIVS 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S+ R LS +++F KYL ++  TT   +  ++  K    LP  L E +   L
Sbjct: 59  LMDKGYTSTSVNRKLSSLRTFYKYLLRQGETTIDPLRKIKGPKNKKPLPVFLKENEMNRL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D     T     +   R+  I+ + Y  G+R+SE + L  +++    S L++ GK +K 
Sbjct: 119 LD----ETDFGEGFKGCRDRLIIEMFYATGMRLSELIGLDNKDVDFSASLLKVTGKRNKQ 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R++P    +++ +LEY  +    +    +   F    G+ L   +    +++    +   
Sbjct: 175 RLIPFGDELQELMLEYISVRNETIPERSE-AFFIRENGERLYKNLVYNLVKRNLSKVATL 233

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FAT +L+N  +L +++ +LGH  ++TT+IYT+   +     + ++Y Q 
Sbjct: 234 KKKSPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIYTHATFEE----LKKVYKQA 289

Query: 318 HPSI 321
           HP  
Sbjct: 290 HPRA 293


>gi|251793385|ref|YP_003008113.1| site-specific tyrosine recombinase XerC [Aggregatibacter
           aphrophilus NJ8700]
 gi|247534780|gb|ACS98026.1| tyrosine recombinase XerC [Aggregatibacter aphrophilus NJ8700]
          Length = 295

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 92/312 (29%), Positives = 150/312 (48%), Gaps = 17/312 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +    Q +   L+IER +S  TL +Y+    + +  L     +   IQ  +Q++ + +R 
Sbjct: 1   MQNALQKYWTYLKIERQVSPHTLSNYQRQLVRIVEIL-----QHAGIQQWQQVTPSVVRF 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            I++     + ++SL   LS ++ FL YL +      +    +   K++  LP+ ++ +Q
Sbjct: 56  VIAQSHKDGLHEKSLALRLSALRRFLSYLVQLGELKVNPATGISAPKQAKHLPKNIDTEQ 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+       +   + ID R+ AI+ LLY  GLR+SE   L   +I      +R+ GK
Sbjct: 116 VQQLL------ANDSKEPIDIRDRAIIELLYSSGLRLSELQGLNLNSINIRVREVRVIGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R+VPL      AI ++  +    L       LF    G  ++    Q  +      
Sbjct: 170 GNKERVVPLGRYASHAIQQWLKVR--LLFNPKDEALFVSQLGNRMSHRAIQMRLETWGIR 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    + E+
Sbjct: 228 QRLNSHLNPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEV 283

Query: 314 YDQTHPSITQKD 325
           YD  HP   +K 
Sbjct: 284 YDSAHPRAKRKK 295


>gi|227513451|ref|ZP_03943500.1| site-specific recombinase XerD [Lactobacillus buchneri ATCC 11577]
 gi|227524593|ref|ZP_03954642.1| site-specific recombinase XerD [Lactobacillus hilgardii ATCC 8290]
 gi|227083324|gb|EEI18636.1| site-specific recombinase XerD [Lactobacillus buchneri ATCC 11577]
 gi|227088268|gb|EEI23580.1| site-specific recombinase XerD [Lactobacillus hilgardii ATCC 8290]
          Length = 331

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 87/312 (27%), Positives = 150/312 (48%), Gaps = 16/312 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L  ER  S+ T+Q+Y+ D  +FL FL   +++  ++  I      ++ ++++    
Sbjct: 31  FLKYLRSERHYSEDTVQAYQNDLTEFLKFLNETSKDHTSLIKIDSF---DVESYLTGLYD 87

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +K    S+ + +S ++SF  +L K ++   +    +    ++  LPR     +   L   
Sbjct: 88  KKYARNSIAQKVSALRSFYGFLIKNEVIKNNPFEYVHLKNQNRRLPRFFYPTEMQALFS- 146

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                    + +  RNSAIL + Y  G+R+SE +++  ++I  +   + + GKG K R V
Sbjct: 147 ---AAKKGERKLAFRNSAILEVFYSTGIRVSEGVTIQLKDIDLENQLILVTGKGRKQRYV 203

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           P     ++A+  Y       L          LF    GKPL     +  +  + +   L 
Sbjct: 204 PFGEPAKRAVESYLKESREPLMTKYHQKHDYLFVNHFGKPLTSRGIEYILNGIIKQSSLT 263

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            +   H LRH+FAT +L+NG D+RS+Q +LGH  LSTTQIYT+V   +    +M  Y + 
Sbjct: 264 TNIHPHMLRHTFATEMLNNGADMRSVQELLGHSSLSTTQIYTHVTKSH----LMNDYQKY 319

Query: 318 HPSITQ--KDKK 327
            P   Q  K KK
Sbjct: 320 FPRNNQSLKPKK 331


>gi|325912006|ref|ZP_08174408.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 143-D]
 gi|325476191|gb|EGC79355.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 143-D]
          Length = 307

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 84/318 (26%), Positives = 147/318 (46%), Gaps = 19/318 (5%)

Query: 15  LKERQNWLQ----NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           +K+  ++L+     L+ ER  S  T ++Y  D  +   F      E        +LS  +
Sbjct: 1   MKQADDFLKLYYNYLKNERNYSINTCKAYMDDLSEARTFFV----ENGGFIDWLKLSSRD 56

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           I  FI     +K    +  R +S ++SF ++L KR I   + +  +        LP  L 
Sbjct: 57  IEIFIQYLAQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGDHKKLPEFLY 116

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             + + ++ ++       T  +  RN A+L L Y  G+R+SE  +L    I  + + + +
Sbjct: 117 SDEMVKVLKSI-----STTTPLGLRNMALLELFYATGMRVSEISNLKLDQIDFELNLILV 171

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIR 248
            GKG+K R V      + A+  Y       L L+      +F    G  +     +  I+
Sbjct: 172 HGKGNKDRYVAFGEEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNRITSRGLEYIIK 231

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            +    G+  S   H LRH+FAT +L+NG DLR++Q +LGH  +STTQIYT+V  ++   
Sbjct: 232 NIFLNAGISASVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQH--- 288

Query: 309 WMMEIYDQTHPSITQKDK 326
            + +IY +  P   ++++
Sbjct: 289 -LCDIYHKYFPRDNKENE 305


>gi|309809264|ref|ZP_07703133.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN
           2503V10-D]
 gi|308170377|gb|EFO72401.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN
           2503V10-D]
          Length = 307

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 83/318 (26%), Positives = 148/318 (46%), Gaps = 19/318 (5%)

Query: 15  LKERQNWLQ----NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           +K+  ++L+     L+ ER  S  T ++Y  D  +   F      E        +LS  +
Sbjct: 1   MKQADDFLKLYYNYLKNERNYSINTCKAYMDDLSEARTFFV----ENGGFIDWIKLSSRD 56

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           I  FI     +K    +  R +S ++SF ++L KR I   + +  +    +   LP  L 
Sbjct: 57  IEIFIQYLAQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGEHKKLPEFLY 116

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             + + ++ ++       T  +  RN A+L L Y  G+R+SE  +L  + I  + + + +
Sbjct: 117 NDEMVKVLKSI-----STTTPLGLRNMALLELFYATGMRVSEIANLKLEQIDFELNLILV 171

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            GKG+K R V      + A+  Y         L+      +F    G  +     +  I+
Sbjct: 172 HGKGNKDRYVAFGEEAKTALNNYLVEARKKILLHKTDYGYVFLNSNGNRITSRGLEYIIK 231

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            +    G+  S   H LRH+FAT +L+NG DLR++Q +LGH  +STTQIYT+V  ++   
Sbjct: 232 NIFLNAGVSASVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQH--- 288

Query: 309 WMMEIYDQTHPSITQKDK 326
            + +IY +  P   ++++
Sbjct: 289 -LCDIYHKYFPRDNKENE 305


>gi|49483415|ref|YP_040639.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425306|ref|ZP_05601731.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427967|ref|ZP_05604365.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430600|ref|ZP_05606982.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433360|ref|ZP_05609718.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436202|ref|ZP_05612249.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M876]
 gi|282903807|ref|ZP_06311695.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           C160]
 gi|282905570|ref|ZP_06313425.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908545|ref|ZP_06316375.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910824|ref|ZP_06318627.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914029|ref|ZP_06321816.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M899]
 gi|282918951|ref|ZP_06326686.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           C427]
 gi|282924074|ref|ZP_06331750.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           C101]
 gi|283957995|ref|ZP_06375446.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293501061|ref|ZP_06666912.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510023|ref|ZP_06668731.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M809]
 gi|293526609|ref|ZP_06671294.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M1015]
 gi|295427739|ref|ZP_06820371.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297591303|ref|ZP_06949941.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus MN8]
 gi|81651263|sp|Q6GHI3|XERC_STAAR RecName: Full=Tyrosine recombinase xerC
 gi|49241544|emb|CAG40230.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257271763|gb|EEV03901.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274808|gb|EEV06295.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278728|gb|EEV09347.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281453|gb|EEV11590.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284484|gb|EEV14604.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M876]
 gi|282314046|gb|EFB44438.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           C101]
 gi|282316761|gb|EFB47135.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           C427]
 gi|282322097|gb|EFB52421.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M899]
 gi|282325429|gb|EFB55738.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327607|gb|EFB57890.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282330862|gb|EFB60376.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595425|gb|EFC00389.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           C160]
 gi|283790144|gb|EFC28961.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920681|gb|EFD97744.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291096066|gb|EFE26327.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466967|gb|EFF09485.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M809]
 gi|295128097|gb|EFG57731.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297576189|gb|EFH94905.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus MN8]
 gi|312438369|gb|ADQ77440.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|315194139|gb|EFU24532.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|323441030|gb|EGA98737.1| integrase/recombinase [Staphylococcus aureus O11]
 gi|323443899|gb|EGB01510.1| integrase/recombinase [Staphylococcus aureus O46]
          Length = 298

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 84/309 (27%), Positives = 150/309 (48%), Gaps = 16/309 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +L  L++ER  S+ TL+SY+ D  QF  FL     +      +    Y + R ++S 
Sbjct: 5   QEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLQ------LNTFEYRDARNYLSY 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             +  +   S+ R +S +++F +Y         +  + + + KK   LP+   E++   L
Sbjct: 59  LYSNHLKRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEAL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                  T  E      R+  IL LLY  G+R+SE +++  Q+I    + + + GKG K 
Sbjct: 119 F-----KTVEEDTSKSLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R VP     R++I  Y +      + N    L   ++G+ +     +  +  + +     
Sbjct: 174 RFVPFGAYCRQSIENYLEHFKPIQSCNHDF-LIVNMKGEAITERGVRYVLNDIVKRTAGV 232

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++     + ++Y   
Sbjct: 233 SEIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ----LRKVYLNA 288

Query: 318 HPSITQKDK 326
           HP   ++++
Sbjct: 289 HPRAKKENE 297


>gi|309804146|ref|ZP_07698224.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV
           11V1-d]
 gi|315653524|ref|ZP_07906445.1| tyrosine recombinase XerC [Lactobacillus iners ATCC 55195]
 gi|308163729|gb|EFO65998.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV
           11V1-d]
 gi|315489215|gb|EFU78856.1| tyrosine recombinase XerC [Lactobacillus iners ATCC 55195]
          Length = 307

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 84/318 (26%), Positives = 149/318 (46%), Gaps = 19/318 (5%)

Query: 15  LKERQNWLQ----NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           +K+  ++L+     L+ ER  S  T ++Y  D  +   F      E        +LS  +
Sbjct: 1   MKQADDFLKLYYNYLKNERNYSINTCKAYMDDLSEARTFFV----ENGGFIDWIKLSSRD 56

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           I  FI     +K    +  R +S ++SF ++L KR I   + +  +    +   LP  L 
Sbjct: 57  IEIFIQYLAQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGEHKKLPEFLY 116

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             + + ++ ++       T  +  RN A+L L Y  G+R+SE  +L  + I  + + + +
Sbjct: 117 NDEMVKVLKSI-----STTTPLGLRNMALLELFYATGMRVSEIANLKLEQIDFELNLILV 171

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIR 248
            GKG+K R V      + A+  Y       L L+      +F    G  +     +  I+
Sbjct: 172 HGKGNKDRYVAFGEEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNRITSRGLEYIIK 231

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            +    G+  S   H LRH+FAT +L+NG DLR++Q +LGH  +STTQIYT+V  ++   
Sbjct: 232 NIFLNAGVSASVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQH--- 288

Query: 309 WMMEIYDQTHPSITQKDK 326
            + +IY +  P   ++++
Sbjct: 289 -LCDIYHKYFPRDNKENE 305


>gi|83942296|ref|ZP_00954757.1| tyrosine recombinase XerD [Sulfitobacter sp. EE-36]
 gi|83846389|gb|EAP84265.1| tyrosine recombinase XerD [Sulfitobacter sp. EE-36]
          Length = 324

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 91/321 (28%), Positives = 147/321 (45%), Gaps = 20/321 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +  ELL     +L+    E G +  T  +Y  D + F  FLA  T + +T      +   
Sbjct: 1   MQTELLHWISTFLEAQAAELGAATNTQLAYGRDLKDFDSFLARRTLDFVT------VGRK 54

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +I A++     Q +   +  R LS IK   ++  +    +++  + +    +   LP+ L
Sbjct: 55  DIEAYLVWCDAQGLAKSTRARRLSAIKQLYRFAFEEGWRSDNPAIQIAGPGQDKRLPKVL 114

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +E +   L+D       + +  +  RN+ ++ LLY  G+R+SE +SL       D   L 
Sbjct: 115 SEDEVDQLLDAARHSGRNTSDQL--RNTCLMELLYATGMRVSELVSLRVSAARGDPRLLL 172

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPF------DLNLNIQLPLFRGI-RGKPLNPGV 242
           I GKG K R+VPL    R+A+  +                   + LF        L    
Sbjct: 173 IMGKGGKERLVPLSDPSREALAAWLVQRDRTDEAAQAKGKPASIYLFPSRGSAGYLTRHR 232

Query: 243 FQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           F   I++     G+ P   T HTLRH+FATHLL+NG DLR+IQ++LGH  ++TT+IYT+V
Sbjct: 233 FYLLIKEFALTAGVDPSKVTPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEIYTHV 292

Query: 302 NSKNGGDWMMEIYDQTHPSIT 322
                   + E+  + HP   
Sbjct: 293 LEAR----LSELVLENHPLAK 309


>gi|293607049|ref|ZP_06689392.1| integrase/recombinase [Achromobacter piechaudii ATCC 43553]
 gi|292814539|gb|EFF73677.1| integrase/recombinase [Achromobacter piechaudii ATCC 43553]
          Length = 332

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 81/325 (24%), Positives = 143/325 (44%), Gaps = 30/325 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF---------------YTEEKITI 60
            +   ++  + +E GLS  TL +Y  D   F  +L                   E  + +
Sbjct: 17  ADIDAFIDAVWLEDGLSANTLAAYRRDLTGFARWLEDPQAYAREMADRHGDAAGEHALPV 76

Query: 61  ---QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
              + +      +I A+ + R  +     +  R L+ ++ F  +  +   +     L + 
Sbjct: 77  GPAKPLCDAQKADIEAWFAFRHEETRA-TTANRRLAALRRFFAWALREHRSQRDPCLTLV 135

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             K+   LP+ L+E+Q   L+          T+    R+ A+L  LY  GLR+SE + + 
Sbjct: 136 AAKQPPRLPKTLSEQQVDALL-----RAPDATQPRGLRDRAMLETLYATGLRVSELVGVR 190

Query: 178 PQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRG 235
             ++  ++  +R+  GKG K R+VPL       I  Y      +L    Q   LF   R 
Sbjct: 191 ALDVSLNEGVVRVVLGKGGKDRLVPLGAEAAHWIDLYSKTARPELAAGRQSDALFITGRA 250

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           + ++   F + +++      +    + H LRH+FATHLL++G DLR +Q +LGH  +STT
Sbjct: 251 EAMSRQAFWQLVKKYALLADIHAPLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTT 310

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHPS 320
           QIYT+V  +     +  ++   HP 
Sbjct: 311 QIYTHVARER----LKALHAAHHPR 331


>gi|71905836|ref|YP_283423.1| tyrosine recombinase XerC subunit [Dechloromonas aromatica RCB]
 gi|71845457|gb|AAZ44953.1| tyrosine recombinase XerC subunit [Dechloromonas aromatica RCB]
          Length = 295

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 89/312 (28%), Positives = 158/312 (50%), Gaps = 19/312 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +     WL  L  +R LS  T+ +Y  D ++ L               +  L    +R F
Sbjct: 1   MLAVDTWLAELSDQRRLSAHTVSNYRRDLQKLLAAAGDI--------PLASLQVHHLRRF 52

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++   Q +  RSL R+LS  + F  +L +R +   +    +R  K    LP+AL+  + 
Sbjct: 53  VAQLHGQGLAGRSLARALSAWRGFFHWLGERGMVKANPCDGIRPPKSPRMLPKALSVDET 112

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQG 192
             L    L+    +     AR+ A+  L Y  GLR++E ++L  + + D   +S +R+ G
Sbjct: 113 SRL----LMPVDDDDPVQAARDLAMFELFYSSGLRLAELVALDCEALDDIAHESEVRVLG 168

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K +K+R+VP+    R+A+  +  +   +L    +  LF G RG  ++P + +  + +   
Sbjct: 169 KRNKLRLVPVGSKAREALAAWAAVRN-ELAKPEEKALFVGQRGGRISPRMVEARLARRAV 227

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            LGLP     H LRHSFA+H+L + GDLR++Q +LGH  +++TQ+YT+++ ++    + +
Sbjct: 228 LLGLPTHVHPHMLRHSFASHVLQSSGDLRAVQEMLGHASIASTQVYTHLDFQH----LAK 283

Query: 313 IYDQTHPSITQK 324
           +YD  HP    K
Sbjct: 284 VYDAAHPRAKSK 295


>gi|15924242|ref|NP_371776.1| site-specific recombinase XerC-like protein [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15926835|ref|NP_374368.1| hypothetical protein SA1095 [Staphylococcus aureus subsp. aureus
           N315]
 gi|156979573|ref|YP_001441832.1| site-specific recombinase XerC homologue [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|253315609|ref|ZP_04838822.1| hypothetical protein SauraC_05582 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255006039|ref|ZP_05144640.2| hypothetical protein SauraM_06200 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257795692|ref|ZP_05644671.1| tyrosine recombinase XerC [Staphylococcus aureus A9781]
 gi|258415916|ref|ZP_05682186.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|258421678|ref|ZP_05684602.1| tyrosine recombinase XerC [Staphylococcus aureus A9719]
 gi|258434834|ref|ZP_05688908.1| xerC protein [Staphylococcus aureus A9299]
 gi|258444590|ref|ZP_05692919.1| xerC protein [Staphylococcus aureus A8115]
 gi|258447577|ref|ZP_05695721.1| tyrosine recombinase xerC [Staphylococcus aureus A6300]
 gi|258449419|ref|ZP_05697522.1| tyrosine recombinase xerC [Staphylococcus aureus A6224]
 gi|258454798|ref|ZP_05702762.1| tyrosine recombinase XerC [Staphylococcus aureus A5937]
 gi|269202868|ref|YP_003282137.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282892740|ref|ZP_06300975.1| tyrosine recombinase XerC [Staphylococcus aureus A8117]
 gi|282927594|ref|ZP_06335210.1| tyrosine recombinase XerC [Staphylococcus aureus A10102]
 gi|295406188|ref|ZP_06815995.1| tyrosine recombinase XerC [Staphylococcus aureus A8819]
 gi|296274810|ref|ZP_06857317.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus MR1]
 gi|297244416|ref|ZP_06928299.1| tyrosine recombinase XerC [Staphylococcus aureus A8796]
 gi|54039882|sp|P67631|XERC_STAAN RecName: Full=Tyrosine recombinase xerC
 gi|54042779|sp|P67630|XERC_STAAM RecName: Full=Tyrosine recombinase xerC
 gi|166918904|sp|A7X1M7|XERC_STAA1 RecName: Full=Tyrosine recombinase xerC
 gi|13701052|dbj|BAB42347.1| xerC [Staphylococcus aureus subsp. aureus N315]
 gi|14247022|dbj|BAB57414.1| site-specific recombinase XerC homologue [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|156721708|dbj|BAF78125.1| site-specific recombinase XerC homologue [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|257789664|gb|EEV28004.1| tyrosine recombinase XerC [Staphylococcus aureus A9781]
 gi|257839252|gb|EEV63726.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|257842364|gb|EEV66789.1| tyrosine recombinase XerC [Staphylococcus aureus A9719]
 gi|257849195|gb|EEV73177.1| xerC protein [Staphylococcus aureus A9299]
 gi|257850083|gb|EEV74036.1| xerC protein [Staphylococcus aureus A8115]
 gi|257853768|gb|EEV76727.1| tyrosine recombinase xerC [Staphylococcus aureus A6300]
 gi|257857407|gb|EEV80305.1| tyrosine recombinase xerC [Staphylococcus aureus A6224]
 gi|257863181|gb|EEV85945.1| tyrosine recombinase XerC [Staphylococcus aureus A5937]
 gi|262075158|gb|ACY11131.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282590597|gb|EFB95674.1| tyrosine recombinase XerC [Staphylococcus aureus A10102]
 gi|282764737|gb|EFC04862.1| tyrosine recombinase XerC [Staphylococcus aureus A8117]
 gi|285816934|gb|ADC37421.1| Site-specific tyrosine recombinase [Staphylococcus aureus 04-02981]
 gi|294968776|gb|EFG44798.1| tyrosine recombinase XerC [Staphylococcus aureus A8819]
 gi|297178446|gb|EFH37692.1| tyrosine recombinase XerC [Staphylococcus aureus A8796]
 gi|312829646|emb|CBX34488.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315131045|gb|EFT87029.1| hypothetical protein CGSSa03_05869 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329727078|gb|EGG63534.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           21172]
          Length = 298

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 84/309 (27%), Positives = 152/309 (49%), Gaps = 16/309 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +L  L++ER  S+ TL+SY+ D  QF  FL     +      ++   Y + R ++S 
Sbjct: 5   QEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLQ------LKTFEYRDARNYLSY 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             +  +   S+ R +S +++F +Y         +  + + + KK   LP+   E++   L
Sbjct: 59  LYSNHLKRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEAL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                  T  E    + R+  IL LLY  G+R+SE +++  Q+I    + + + GKG K 
Sbjct: 119 F-----KTVEEDTSKNLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R VP     R++I  Y +      + N    L   ++G+ +     +  +  + +     
Sbjct: 174 RFVPFGAYCRQSIENYLEHFKPIQSCNHDF-LILNMKGEAITERGVRYVLNDIVKRTAGV 232

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++     + ++Y   
Sbjct: 233 SEIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ----LRKVYLNA 288

Query: 318 HPSITQKDK 326
           HP   ++++
Sbjct: 289 HPRAKKENE 297


>gi|163792809|ref|ZP_02186786.1| integrase/recombinase XerD [alpha proteobacterium BAL199]
 gi|159182514|gb|EDP67023.1| integrase/recombinase XerD [alpha proteobacterium BAL199]
          Length = 314

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 135/308 (43%), Gaps = 16/308 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             + +L+ +  ERG ++ TL +Y  D     ++L           ++       +RA++S
Sbjct: 13  AIETFLEMMAAERGAARNTLDAYGRDLMHAELWLNERGG------SLETADVDGLRAYLS 66

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                 +  R+  R LS  + F ++L       +     +   ++   LP+ L+E     
Sbjct: 67  AAEAGGVMPRTAARRLSAQRQFFRFLYAEGRRADDPTATLDAPRRGRPLPKILSEADVDA 126

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+D               R   +L +LY  GLR+SE + L    +  D   L ++GKG K
Sbjct: 127 LLD----AACDRPGPEGLRLICLLEVLYATGLRVSELVGLPFAAVARDPHVLIVRGKGGK 182

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLG 255
            R+VPL  +   AI  Y  +    L       LF        L    F + + +     G
Sbjct: 183 ERMVPLTAAAMDAIAAYKAVRGVFLTTKASPHLFPSRSAQGHLTRRRFGQLLDETAILAG 242

Query: 256 L-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           + P   + H LRH+FATHLL +G DLRS+Q +LGH  +STTQIYT+V ++     +  + 
Sbjct: 243 IDPAKVSPHVLRHAFATHLLDHGADLRSVQQMLGHADISTTQIYTHVLAER----LRALV 298

Query: 315 DQTHPSIT 322
           +  HP   
Sbjct: 299 ETHHPLAR 306


>gi|293372135|ref|ZP_06618526.1| tyrosine recombinase XerC [Bacteroides ovatus SD CMC 3f]
 gi|292632927|gb|EFF51514.1| tyrosine recombinase XerC [Bacteroides ovatus SD CMC 3f]
          Length = 293

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 74/304 (24%), Positives = 146/304 (48%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L  L+ ER  S+ T+ +Y  D +Q   F     +E+       ++    IR +I  
Sbjct: 3   IESFLDYLQYERNYSEKTVLAYGEDIKQLQEF----AQEEYGKFDPLEVEAELIREWIVS 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S+ R LS +++F KYL ++  TT   +  ++  K    LP  L E +   L
Sbjct: 59  LMDKGYTSTSVNRKLSSLRTFYKYLIRQGETTIDPLRKIKGPKNKKPLPVFLKENEMNRL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D     T     +   R+  ++ + Y  G+R+SE + L  +++    S L++ GK +K 
Sbjct: 119 LD----DTDFGQGFKGCRDRLVIEVFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQ 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R++P    +++ +LEY ++    +    +   F    G+ L   +    +++    +   
Sbjct: 175 RLIPFGDELQELMLEYINVRNETIPERSE-AFFIRENGERLYKNLVYNLVKRNLSKVVTL 233

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FAT +L+N  +L +++ +LGH  ++TT+IYT+   +     + ++Y Q 
Sbjct: 234 KKKSPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIYTHATFEE----LKKVYKQA 289

Query: 318 HPSI 321
           HP  
Sbjct: 290 HPRA 293


>gi|213963184|ref|ZP_03391442.1| tyrosine recombinase XerD [Capnocytophaga sputigena Capno]
 gi|213954268|gb|EEB65592.1| tyrosine recombinase XerD [Capnocytophaga sputigena Capno]
          Length = 303

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 152/305 (49%), Gaps = 16/305 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +   L ++RGLS+ T  SY  D  + + +L  Y       +T   +    +R F+    
Sbjct: 8   AFQHYLRLQRGLSQNTAVSYGLDIEKLICYLEKYNI----TETPNNIEEDTLRQFV-YEV 62

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +  RS  R +S +KSF K++   K   +  +  + + K    LP  L+ ++   ++ 
Sbjct: 63  AKDLNARSQARLISALKSFFKFMMYEKGREDFPMSLIESPKIGVKLPDTLSLQEIDAMLA 122

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           ++ L T         RN A++ +LY CGLR+SE +SL   ++  D+  +R+ GKG K R+
Sbjct: 123 SIDLSTDE-----GHRNKAMIEMLYACGLRVSELISLRLSDLFFDEDFIRVMGKGSKQRL 177

Query: 200 VPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           VP+    +K + +Y         +    +  +F   RGK L   +    +RQ+   +GL 
Sbjct: 178 VPIEAYTQKQVKQYIDNQRRQLKIAKGHEDFVFLNRRGKQLTRAMIFTIVRQVAENIGLQ 237

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + + HT RHSFATHLL NG +LR+IQ +LGH  ++TT+IY +V       ++ E   + 
Sbjct: 238 KTISPHTFRHSFATHLLENGANLRAIQMMLGHENITTTEIYVHV----EKSYLREALIKY 293

Query: 318 HPSIT 322
           HP   
Sbjct: 294 HPRQK 298


>gi|170698617|ref|ZP_02889685.1| tyrosine recombinase XerD [Burkholderia ambifaria IOP40-10]
 gi|170136470|gb|EDT04730.1| tyrosine recombinase XerD [Burkholderia ambifaria IOP40-10]
          Length = 320

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 86/316 (27%), Positives = 139/316 (43%), Gaps = 20/316 (6%)

Query: 9   IVSFELLKERQN---WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
             S  LL  R +   +   L +E GL++ TL +Y  D   F  +LA   +       +  
Sbjct: 20  AASPALLASRASIDVFCDALWLEHGLARNTLDAYRRDLVLFSQWLAATHD-----APLDS 74

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
                +  +I+ R   K    S  R LS  + +  +  +    +    L + + K++   
Sbjct: 75  ADEAMLIGYIAARSDGK--ATSSNRRLSVFRRYYGWAVREHRASADPTLRITSAKQAARF 132

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P  L+E Q   L+             +  R+  +L L+Y  GLR+SE ++L    +  ++
Sbjct: 133 PSTLSEAQVEALL-----GAPDIGTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNE 187

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
             +R+ GKG K R+VP        I  Y     P  L       LF   RG  +    F 
Sbjct: 188 GVVRVMGKGSKERLVPFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFW 247

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             I++  +   +    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +
Sbjct: 248 NIIKRHAQQAAVRAHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARE 307

Query: 305 NGGDWMMEIYDQTHPS 320
                +  ++   HP 
Sbjct: 308 R----LKTLHATHHPR 319


>gi|283470467|emb|CAQ49678.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 298

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 84/309 (27%), Positives = 150/309 (48%), Gaps = 16/309 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +L  L++ER  S+ TL+SY+ D  QF  FL     +      +    Y + R ++S 
Sbjct: 5   QEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLQ------LNTFEYRDARNYLSY 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             +  +   S+ R +S +++F +Y         +  + + + KK   LP+   E++   L
Sbjct: 59  LYSNHLKRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEAL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                  T  E      R+  IL LLY  G+R+SE +++  Q+I    + + + GKG K 
Sbjct: 119 F-----KTVEEDASKSLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R VP     R++I  Y +      + N    L   ++G+ +     +  +  + +     
Sbjct: 174 RFVPFGAYCRQSIENYLEHFKPIQSCNHDF-LIVNMKGEAITERGVRYVLNNIVKRTAGV 232

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++     + ++Y   
Sbjct: 233 SEIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ----LRKVYLNA 288

Query: 318 HPSITQKDK 326
           HP   ++++
Sbjct: 289 HPRAKKENE 297


>gi|260426671|ref|ZP_05780650.1| tyrosine recombinase XerD [Citreicella sp. SE45]
 gi|260421163|gb|EEX14414.1| tyrosine recombinase XerD [Citreicella sp. SE45]
          Length = 308

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 81/310 (26%), Positives = 138/310 (44%), Gaps = 20/310 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+    ERG +  T  +Y  D   F  +L            +      ++  ++     
Sbjct: 10  FLEAQAAERGAADNTTAAYARDLADFTRWLTARG------AGLDTAQRADVEDYLVTCEA 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   +  R LS IK   ++  +  + +++  + +    K   LP+ L+ ++   L++ 
Sbjct: 64  EGLAISTRARRLSSIKQLYRFAFEEGLRSDNPAVQISGPGKPKRLPKTLSIEEVDRLIEA 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                  E   +  RN+ ++ LLY  G+R++E ++L       D   L I+GKG K R+V
Sbjct: 124 AASQGRTEDDRL--RNACLMQLLYATGMRVTELVTLPVSAARGDPRMLLIRGKGGKERMV 181

Query: 201 PLLPSVRKAILEYYDLCP------FDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRY 253
           PL P  R A+  +                   + LF    +   L    F   I+++   
Sbjct: 182 PLSPPARVALATWLSRRDEQEAVAHAAGKPASVHLFPSRGKAGHLTRHAFYLLIKEIAVS 241

Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+ P   T HTLRH+FATHLL NG DLR+IQ+ LGH  ++TT+IYT+V  +     + E
Sbjct: 242 AGVSPGKVTPHTLRHAFATHLLQNGADLRAIQTFLGHADVATTEIYTHVLEER----LKE 297

Query: 313 IYDQTHPSIT 322
           +    HP   
Sbjct: 298 LVLDHHPLAR 307


>gi|329851121|ref|ZP_08265878.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19]
 gi|328839967|gb|EGF89539.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19]
          Length = 315

 Score =  242 bits (617), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 86/314 (27%), Positives = 143/314 (45%), Gaps = 18/314 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
               + +LQ + +ER  ++ TL +Y  D    +         K+T Q +  LS  ++  +
Sbjct: 16  FDPVRQFLQMMAVERNAARPTLDAYGRDLDDLMATC------KVTPQGLLGLSDGDLAGY 69

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
                 + +   SL+R  S ++ F ++     +T       +   KK   LP+ L+  + 
Sbjct: 70  FQDLSERGLASSSLQRKRSAVRQFYRFCVAENLTGHDPSRKIAAAKKGLKLPKILSRDEV 129

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+        ++   ++     ++ + Y  G+RISE + L    +  D + L I+GKG
Sbjct: 130 DALIAAADAIAPNQAVRLE----CLIEMAYASGMRISELVGLKLDAVARDPACLIIKGKG 185

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGI-RGKPLNPGVFQRYIRQLR 251
              R+VPL PS R AI EY D+    L    +    LF    +   L      + + Q  
Sbjct: 186 GVERLVPLNPSARAAIKEYLDIRYTFLPAGDKANPYLFSSRGKEGHLTRRRVGQLLDQAA 245

Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              G+ P   + H LRH+FATHLL  G DLR +Q++LGH  +STTQIYT+V  +     +
Sbjct: 246 INAGIDPARVSPHVLRHAFATHLLEGGADLRVVQTLLGHADISTTQIYTHVAGER----L 301

Query: 311 MEIYDQTHPSITQK 324
            E+ +  HP    +
Sbjct: 302 REVVETHHPLAKGR 315


>gi|288956928|ref|YP_003447269.1| integrase/recombinase [Azospirillum sp. B510]
 gi|288909236|dbj|BAI70725.1| integrase/recombinase [Azospirillum sp. B510]
          Length = 355

 Score =  242 bits (617), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 85/324 (26%), Positives = 140/324 (43%), Gaps = 31/324 (9%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
               +L  L  ERG +  T  +YE D      +LA           +      ++RA+++
Sbjct: 40  HLDAFLDMLTAERGAAVNTRLAYERDLADLGRWLAQRG------VALEGAGTEDLRAYLA 93

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            +       R++ R LS ++ F ++L      ++     + + K+   LP+ L+E +   
Sbjct: 94  VQGKDG-APRTVARRLSAMRQFYRFLLSEGRRSDDPASPLDSPKQGRPLPKILSEAEVGA 152

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           ++                R  A+L +LY  GLR+SE + L    IM D   L ++GKG K
Sbjct: 153 MLST----AEARGGPEGLRLVALLEVLYATGLRVSELVGLPMTAIMRDGRGLLVRGKGGK 208

Query: 197 IRIVPLLPSVRKAILEYYDLCPF-------------DLNLNIQLPLFRGI--RGKPLNPG 241
            R+VPL      A+  Y  +                         LF         L   
Sbjct: 209 ERMVPLSDPALAALAAYIPVRAHFIPPGTGAGGGGAGGEGGHSPFLFPSRISAEGYLTRQ 268

Query: 242 VFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            F + ++QL    G+ P   + H LRH+FATHLL +G DLRS+Q +LGH  ++TTQIYT+
Sbjct: 269 RFAQLLKQLAIDAGIDPEKVSPHVLRHAFATHLLDHGADLRSVQKMLGHADIATTQIYTH 328

Query: 301 VNSKNGGDWMMEIYDQTHPSITQK 324
           V ++     + ++    HP   ++
Sbjct: 329 VVTER----LRKVMHDHHPLARRR 348


>gi|154509161|ref|ZP_02044803.1| hypothetical protein ACTODO_01682 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798795|gb|EDN81215.1| hypothetical protein ACTODO_01682 [Actinomyces odontolyticus ATCC
           17982]
          Length = 303

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 145/305 (47%), Gaps = 10/305 (3%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-LSYTEIRAFISK 77
           + W + L + R +S  T+ +Y  D    + FL+   +   T + +R+ L+   +R+++++
Sbjct: 7   ERWEEYLRLGRRMSPHTVSAYLGDLHSLMEFLSL--DADATPEQLREALTQRAVRSWLAR 64

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    ++ R  + I++F  +  +  I        + + +    LP  L+E  A  L
Sbjct: 65  TLADGGARSTIARHTAAIRNFTSWAMREGILVSDPAALLSSPRADQLLPSPLDESDARVL 124

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++      +        RN AIL L Y CGLR+SE  +L   ++  D  T+R+ GKG+K 
Sbjct: 125 LNTARDEAAAGG-ASQIRNWAILELTYACGLRVSEVCALDISSLNRDALTVRVVGKGNKE 183

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP  P    A+  +       L        LF G +G  ++P + +  + +     G+
Sbjct: 184 RVVPYGPPAADALDHWLVRGRPQLAGERSGNALFLGDKGGRIDPRIVRSMVHKTAARAGV 243

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRHS ATHLL  G DLR++Q +LGH  LSTTQ YT+V++      +  IY +
Sbjct: 244 H-DIAPHGLRHSTATHLLQGGADLRAVQEMLGHSSLSTTQRYTHVDTAR----LSAIYQR 298

Query: 317 THPSI 321
            HP  
Sbjct: 299 AHPRA 303


>gi|288929393|ref|ZP_06423238.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288329495|gb|EFC68081.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 293

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 79/303 (26%), Positives = 135/303 (44%), Gaps = 13/303 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L+ E   S+LT+ SY  D R F  F       K T  +   +    IR ++   
Sbjct: 4   EQFLNYLQYELNRSELTIASYGDDLRAFEAFFK----NKDTQLSWEAVDADLIRNWMESM 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     +++R LS ++SF ++   R    ++    +   K+S  LP+ L E +   L+
Sbjct: 60  MDKGCSATTIQRRLSALRSFYRFGLTRGYVEKNPARGVVGPKRSRPLPQFLREGEMDRLL 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D           + D     I+   Y  G+R++E + L   +I      +++ GKG K R
Sbjct: 120 D----EVPVGESYRDLLAYTIVLTFYSTGMRLAELVGLNDDSIDFGARVIKVLGKGSKQR 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++P    +  A+  Y      ++        F   RG+ +  G  Q  +R     +    
Sbjct: 176 LIPFADELEAALKAYIARRDAEV-ARCDKAFFVDQRGERVKRGAVQNSVRASLAKVTSMK 234

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRHSFAT +L+N   L S++ +LGH  LSTT+IYT+   +     + +IYD+ H
Sbjct: 235 KRSPHVLRHSFATAMLNNDAGLESVKKLLGHESLSTTEIYTHTTFEQ----LRKIYDKAH 290

Query: 319 PSI 321
           P  
Sbjct: 291 PRA 293


>gi|148267742|ref|YP_001246685.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus JH9]
 gi|150393800|ref|YP_001316475.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus JH1]
 gi|189030083|sp|A6U170|XERC_STAA2 RecName: Full=Tyrosine recombinase xerC
 gi|189030084|sp|A5ISD6|XERC_STAA9 RecName: Full=Tyrosine recombinase xerC
 gi|147740811|gb|ABQ49109.1| tyrosine recombinase XerC subunit [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946252|gb|ABR52188.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus JH1]
          Length = 298

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 84/309 (27%), Positives = 152/309 (49%), Gaps = 16/309 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +L  L++ER  S+ TL+SY+ D  QF  FL     +      ++   Y + R ++S 
Sbjct: 5   QEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLQ------LKTFEYRDARNYLSY 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             +  +   S+ R +S +++F +Y         +  + + + KK   LP+   E++   L
Sbjct: 59  LYSNHLKRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEAL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                  T  E    + R+  IL LLY  G+R+SE +++  Q+I    + + + GKG K 
Sbjct: 119 F-----KTVEEDTSKNLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R VP     R++I  Y +      + N    L   ++G+ +     +  +  + +     
Sbjct: 174 RFVPFGAYCRQSIENYLEHFKPIQSCNHDF-LILNMKGEAITERGVRYVLNDIVKRTAGV 232

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++     + ++Y   
Sbjct: 233 SEIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ----LRKVYLNA 288

Query: 318 HPSITQKDK 326
           HP   ++++
Sbjct: 289 HPRAKKENE 297


>gi|84502972|ref|ZP_01001074.1| tyrosine recombinase XerD [Oceanicola batsensis HTCC2597]
 gi|84388717|gb|EAQ01588.1| tyrosine recombinase XerD [Oceanicola batsensis HTCC2597]
          Length = 315

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 89/318 (27%), Positives = 148/318 (46%), Gaps = 19/318 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +      +   ++L+    E G S+ TL +Y  D + F  +L            I   + 
Sbjct: 1   MTGSAAHRWISSFLEAQAAEAGASRNTLLAYGRDLKDFAGWLERQHH------AIDSATR 54

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++ A+++    Q +   +  R LS I+   ++  +    +++  + +R   +S  LPR 
Sbjct: 55  ADVEAYLTDCDAQGLSQATRARRLSAIRQLFRFAFEEGWRSDNPAIEIRGPGRSRKLPRT 114

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L   +   L+D       +E+  +  RN+ ++ LLY  G+R++E +SL       D   L
Sbjct: 115 LTTDEVGALLDAARTKGRNESDRL--RNTCLMELLYATGMRVTELVSLPLAAARGDPRML 172

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD-----LNLNIQLPLFRGIRGK-PLNPGV 242
            I+GKG K R+VPL P  R+A+  +                    LF     +  L    
Sbjct: 173 LIRGKGGKERMVPLSPPAREALAAWLAAREARDEALPRGARPSRALFPSRSAEGHLTRHR 232

Query: 243 FQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           F   I+++    G+ P   T HTLRH+FATHLL NG DLR+IQ++LGH  L+TT+IYT+V
Sbjct: 233 FYILIKEIALAAGVSPAKVTPHTLRHAFATHLLENGADLRAIQTLLGHADLATTEIYTHV 292

Query: 302 NSKNGGDWMMEIYDQTHP 319
                   + E+ +  HP
Sbjct: 293 ----LEHRLRELVETHHP 306


>gi|240139059|ref|YP_002963534.1| Tyrosine recombinase xerD [Methylobacterium extorquens AM1]
 gi|240009031|gb|ACS40257.1| Tyrosine recombinase xerD [Methylobacterium extorquens AM1]
          Length = 328

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 84/315 (26%), Positives = 137/315 (43%), Gaps = 22/315 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L  L  ERG +  TL +Y  D   +L +LA             +    ++RA+I+  
Sbjct: 17  QLFLDMLAAERGAAANTLAAYRRDLDDYLGYLAE------GGIDPEEAQAEQVRAYIASL 70

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   S  R LS I+ F ++L     +       +   +++  LP+ L+  +   L+
Sbjct: 71  EPRGLKASSAARRLSCIRGFHRFLYAEGYSETDPTAPVAAPRRAKGLPKVLSVAEVDRLL 130

Query: 139 -----DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                               AR   +L LLY  GLR+SE ++L        +  L ++GK
Sbjct: 131 ATARERVEAAGDDRAEARAAARMLCLLELLYATGLRVSELVALPRSAAATRERYLVVKGK 190

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRR 252
           G + R+VPL    R+A+  +      + +      LF        L    F R ++    
Sbjct: 191 GGRERLVPLTDLAREAMRTHVAHLTAEGSW-----LFPAESESGHLTRQAFARDLKTAAA 245

Query: 253 YLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              L     + H LRH+FA+HLL NG DLR +Q +LGH  +STTQIYT+V  +     + 
Sbjct: 246 AADLRTDRVSPHVLRHAFASHLLQNGADLRIVQELLGHADISTTQIYTHVLDERLKGMVR 305

Query: 312 EIYDQTHPSITQKDK 326
           ++    HP   + D+
Sbjct: 306 DL----HPLNDRGDQ 316


>gi|327188713|gb|EGE55912.1| tyrosine site-specific integrase/recombinase protein [Rhizobium
           etli CNPAF512]
          Length = 317

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 94/318 (29%), Positives = 148/318 (46%), Gaps = 18/318 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             +++L+ +  ERG +  TLQSYE D      FL   +        + + +  ++ A+++
Sbjct: 8   HVESFLEMMSAERGAAANTLQSYERDLDDIRSFLNGRSIR------LTEAASADLSAYLA 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              +Q     S  R L+ ++ F K+L    I T+     +   KK   LP+ +  ++   
Sbjct: 62  SLASQGFKPSSQARRLAAMRQFYKFLYAEGIRTDDPTGVLDAPKKGRPLPKTMGVEEVGR 121

Query: 137 LVDNVLLHTSHETK--WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           L+                  R  A+L LLY  G+R+SE +SL    +  +   L I+GKG
Sbjct: 122 LLSQAQTEADDPAPGQLQRLRMLALLELLYATGMRVSELVSLPAGVLDQEGRFLMIRGKG 181

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFD----LNLNIQLPLFRG-IRGKPLNPGVFQRYIRQ 249
           +K R+VPL  S  KA+  Y  L   +            LF    +   L   VF R ++ 
Sbjct: 182 NKERLVPLSQSAIKALKSYGRLLAAENAAAKEPQESPFLFSAASKEGYLPRQVFARDLKN 241

Query: 250 LRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           L    GL  S  + H +RH+FA+HLL+NG DLR +Q +LGH  +STTQIYT+V  +    
Sbjct: 242 LAIRAGLTPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER--- 298

Query: 309 WMMEIYDQTHPSITQKDK 326
            + ++    HP   Q  K
Sbjct: 299 -LQQLVQTHHPLAKQAKK 315


>gi|297571163|ref|YP_003696937.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595]
 gi|296931510|gb|ADH92318.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595]
          Length = 313

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 98/321 (30%), Positives = 165/321 (51%), Gaps = 14/321 (4%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           E ++ P     +  +  + + + LE+ RGLS  T ++Y  + R  L F+  ++++  T  
Sbjct: 6   ETDHFP----TQFEQILERYQRELELRRGLSAHTCRAYLHEARSLLEFVCKHSDDPAT-- 59

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           ++ ++   ++R +++  +       S+ R  + I++F ++L K   T       +++ K 
Sbjct: 60  SLPEIDIRDMRLWLADNQQAGHSRASIARHSASIRTFTRWLFKNAYTAADPGTQLKSPKV 119

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           SN LP  L  +QA  L+      T+     +  R++AI+ LLY   +R+SE       ++
Sbjct: 120 SNELPHVLTVEQARELLRVAKERTADGN-ALAIRDAAIVELLYATAIRVSELTGTDVSDV 178

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNP 240
               + LR+ GKGDK RIVP     R A++ + D+    L  N  +  LF G RGK ++P
Sbjct: 179 SPSSN-LRVIGKGDKERIVPFGRPARNALMAWLDVRGTLLEKNPTEQALFVGARGKRIDP 237

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              +  + QL +  GLP   T H LRHS ATHLL  G DLR++Q ILGH  + TTQ YT+
Sbjct: 238 RTVRTLLTQLTKAAGLP-DITPHDLRHSAATHLLDGGSDLRTVQEILGHSSIGTTQRYTH 296

Query: 301 VNSKNGGDWMMEIYDQTHPSI 321
           V+++     +   + Q HP  
Sbjct: 297 VSAER----LRAAFGQAHPRA 313


>gi|170693977|ref|ZP_02885133.1| tyrosine recombinase XerC [Burkholderia graminis C4D1M]
 gi|170141049|gb|EDT09221.1| tyrosine recombinase XerC [Burkholderia graminis C4D1M]
          Length = 307

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 87/317 (27%), Positives = 155/317 (48%), Gaps = 29/317 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L NLE ER LS  TL+ Y  +  Q  +            + +  L+  ++R  +S+  
Sbjct: 9   AYLSNLEHERRLSAHTLRGYTHELEQLRLLAKG--------RPLESLTAVDVRGAVSRAH 60

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +  RS+   LS  ++F ++L  R     + +  +R  K+  +LP+AL+   A  L++
Sbjct: 61  AGGLTARSISHRLSAWRAFYRWLAGRIDLPANPVATVRAPKQPKALPKALSVDDANRLME 120

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-----------DDQSTL 188
           +    ++        R+ A+L L Y  GLR+SE + L  +               D + +
Sbjct: 121 SPPAASAE-----GLRDHAMLELFYSSGLRLSELVGLDARFADADGYRSAGWLKLDSAEV 175

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG + RIVP+      A+  +  +    +  +   PLF   RG  L+P V +  ++
Sbjct: 176 EVLGKGKRRRIVPVGSKALTALNAWLAVRDQMVKHDPH-PLFLSARGNRLSPNVVRERVK 234

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     G+P +   H LRHSFATH+L + GDLR++Q +LGH  ++ TQ+YT ++ ++   
Sbjct: 235 RAALLAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTGLDFQH--- 291

Query: 309 WMMEIYDQTHPSITQKD 325
            +  +YDQ HP   +++
Sbjct: 292 -LARVYDQAHPRAKKRE 307


>gi|73667280|ref|YP_303296.1| Phage integrase, N-terminal SAM- like [Ehrlichia canis str. Jake]
 gi|72394421|gb|AAZ68698.1| Phage integrase, N-terminal SAM- like protein [Ehrlichia canis str.
           Jake]
          Length = 310

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 115/318 (36%), Positives = 173/318 (54%), Gaps = 12/318 (3%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +   +L      W+  LE ER  S  T+ +Y  D  +FL FL  Y    +T++ +  +  
Sbjct: 1   MKDEKLCIIVNEWVSWLEKERRYSVNTVDAYVRDVNKFLGFLYTYVLRPVTLEDVVNIKV 60

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++R + + R    +   +  RSLS +K+F +YL +       +I  +   K  ++LP+ 
Sbjct: 61  ADLRKWFTFRYQANVEAITNARSLSALKNFFRYLSRTYDVDNQSIFCLSRPKLKSALPKT 120

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L +     +V+   LH      W+  R+ AI+ LLYGCGLRISEA+ L  Q++      +
Sbjct: 121 LGQFHIENIVNYYSLH----DNWVFKRDFAIIMLLYGCGLRISEAVGLKFQDV--RTGEI 174

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRY 246
            I GKG+K RI+P+LP VR ++ EY   CP+   LN      +F G+ GK L    F   
Sbjct: 175 LITGKGNKERILPILPVVRNSLDEYIKFCPYHTKLNSVGNEYIFVGVNGKKLGRTYFANR 234

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           I+++   +GLP +TT H  RHSFATHLL +G D+RSIQ +LGH  LSTTQIYT+++ K+ 
Sbjct: 235 IQKICEKIGLPDTTTPHVFRHSFATHLLLSGADIRSIQELLGHANLSTTQIYTHLDHKSI 294

Query: 307 GDWMMEIYDQTHPSITQK 324
            D     Y   HP + +K
Sbjct: 295 IDH----YKNFHPQVIKK 308


>gi|114561634|ref|YP_749147.1| tyrosine recombinase XerC [Shewanella frigidimarina NCIMB 400]
 gi|114332927|gb|ABI70309.1| tyrosine recombinase XerC [Shewanella frigidimarina NCIMB 400]
          Length = 299

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 87/307 (28%), Positives = 152/307 (49%), Gaps = 17/307 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + Q+L  ER LS  T+++Y  + R+    LA  T+       + ++S  ++++ ++    
Sbjct: 10  FSQHLSSERQLSAYTVRNYLFELRRVEDMLAESTQ-------LIEVSRDQLQSVMATLHR 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  RSL   LS +K F  +L +    T S    +   K++  LP+ ++      L+  
Sbjct: 63  KGLSPRSLSLCLSALKQFFDFLLREGAVTVSPAQTLSAPKQNKPLPKNMDVDAVSHLL-- 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
               +      +  R+ AI+ L Y  GLR++E  SL   +I  DQS +++ GKG K R+V
Sbjct: 121 ----SIEGDDPLSLRDKAIMELFYSSGLRLAELASLDCVDIKFDQSEVKVMGKGSKQRVV 176

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+      AI  + +       +     LF   +GK L+    Q  + +  +   + +  
Sbjct: 177 PIGQVALTAIKTWLNCRNQLSCVEAGDALFVSSQGKRLSHRSIQARMAKWGQEQAMAVKV 236

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
             H LRHSFATH+L +  DLR++Q +LGH  LSTTQIYT+++ ++    + ++YD  HP 
Sbjct: 237 HPHKLRHSFATHMLESSQDLRAVQELLGHANLSTTQIYTSLDFQH----LAKVYDNAHPR 292

Query: 321 ITQKDKK 327
             +   K
Sbjct: 293 AKKDRGK 299


>gi|116333446|ref|YP_794973.1| integrase [Lactobacillus brevis ATCC 367]
 gi|116098793|gb|ABJ63942.1| tyrosine recombinase XerC subunit [Lactobacillus brevis ATCC 367]
          Length = 311

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 89/314 (28%), Positives = 145/314 (46%), Gaps = 14/314 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +    ++  L  ER  S  T+++Y  D  +F+ FLA    EK        +   ++  
Sbjct: 1   MDRAITAFMTYLSGERQYSAETVKAYHEDLSEFVQFLADNGGEK----PWTAIDQLDVEV 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++S    +     ++ R LS ++S   +L       +     ++  +  N LPR   E++
Sbjct: 57  YLSDLYDRHYARTTIARKLSTLRSLYSFLMSNGQAQDDPFAYVQLKRHQNHLPRFFYERE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L        ++  + +  R++A+L +LYG G+R+SE ++L    I  D   + I GK
Sbjct: 117 MTAL---FTAAAANPNEQLATRDTALLEVLYGTGIRVSECVNLALSEIDFDGRIMLIHGK 173

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQL 250
           G+K R VP       A+  Y+D     L    Q     +F   RG+ L        + Q+
Sbjct: 174 GNKERYVPFGHYASDALQTYFDTARTPLMAQYQQDHPYVFINHRGQQLTSAGVTYLLNQI 233

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +   L      H LRH+FATHLL+ G DLRS+Q +LGH  LSTTQIYT+V  ++    +
Sbjct: 234 IKRSTLTTDIHPHMLRHTFATHLLNRGADLRSVQELLGHSSLSTTQIYTHVTREH----L 289

Query: 311 MEIYDQTHPSITQK 324
              Y Q  P  T +
Sbjct: 290 QRDYRQFFPRATSE 303


>gi|116492727|ref|YP_804462.1| tyrosine recombinase XerC subunit [Pediococcus pentosaceus ATCC
           25745]
 gi|122265809|sp|Q03FK2|XERC_PEDPA RecName: Full=Tyrosine recombinase xerC
 gi|116102877|gb|ABJ68020.1| tyrosine recombinase XerC subunit [Pediococcus pentosaceus ATCC
           25745]
          Length = 301

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 143/305 (46%), Gaps = 15/305 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + Q L +ER  S+ T+ +Y  D   F  FL    ++      +  +   ++  ++S    
Sbjct: 7   FKQYLTVERQYSEKTVTAYLEDIDAFQKFLTDTGDK----TDLLLVDRFDVNVYMSYLFD 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   S+ R +S ++SF ++L K  +  ++    ++  K+S+ LP    EK+   L + 
Sbjct: 63  RHLARTSISRKVSALRSFYRFLVKNDLVDKNPFELVQLKKQSDKLPHFFYEKEMNMLFEA 122

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           V      +      RN AIL +LYG G+R+SE  +L   +I     T+ + GKG+K R V
Sbjct: 123 VYQAEGAQK----LRNIAILEVLYGTGMRVSECAALQWSDIDFSMQTILVLGKGNKERYV 178

Query: 201 PLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           P     ++A+  Y                  +F     KP+     +  + Q+     L 
Sbjct: 179 PFGRYAKEALQNYRKNEWEPFLSKYKQTHNFVFINHYAKPITTTGIEYILNQVITASSLN 238

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRHSFAT LL+NG DLR++Q +LGH  LSTTQIYT+V  +     + E Y + 
Sbjct: 239 GKIHPHMLRHSFATALLNNGADLRTVQELLGHSSLSTTQIYTHVTKE----KLQESYRKY 294

Query: 318 HPSIT 322
            P  T
Sbjct: 295 FPRST 299


>gi|298386165|ref|ZP_06995722.1| tyrosine recombinase XerC [Bacteroides sp. 1_1_14]
 gi|298261393|gb|EFI04260.1| tyrosine recombinase XerC [Bacteroides sp. 1_1_14]
          Length = 293

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 74/304 (24%), Positives = 141/304 (46%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L  L  ER  S+ T+ +Y  D +Q   F     +E+       ++    IR +I  
Sbjct: 3   IKSFLDYLRYERNYSEKTVLAYGEDIKQLQEF----AQEEYGKFDPLEVEGELIREWIVS 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S+ R LS ++SF KYL ++   T   +  +   K    LP  L E +   L
Sbjct: 59  LMDRGYTSTSVNRKLSSLRSFYKYLLRQGEVTVDPLRKITGPKNKKPLPVFLKENEMDKL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D     T     +   R+  I+ + Y  G+R+SE + L  +++    S L++ GK +K 
Sbjct: 119 LD----DTDFGEGFKGCRDRLIIEMFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQ 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R++P    +++ +LEY ++    +    +   F    G  L   +    +++    +   
Sbjct: 175 RLIPFGDELKELMLEYINVRNEAIPERSK-AFFIKEDGGRLYKNLVYNLVKRNLSKVATL 233

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FAT +L+N  +L +++ +LGH  ++TT+IY +   +     + ++Y Q 
Sbjct: 234 KKRSPHVLRHTFATTMLNNDAELGAVKELLGHESIATTEIYAHATFEE----LKKVYKQA 289

Query: 318 HPSI 321
           HP  
Sbjct: 290 HPRA 293


>gi|298370045|ref|ZP_06981361.1| tyrosine recombinase XerC [Neisseria sp. oral taxon 014 str. F0314]
 gi|298281505|gb|EFI22994.1| tyrosine recombinase XerC [Neisseria sp. oral taxon 014 str. F0314]
          Length = 300

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 87/314 (27%), Positives = 148/314 (47%), Gaps = 18/314 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +  +   ++L  L  E G S  T+++Y  D  Q    L     E         +   +  
Sbjct: 5   DFYRYFDDYLTALRQE-GKSAHTVEAYRRDLSQLERLLMLRPSENG-----ADVRRGDFL 58

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           A + K   + + +RS+ R LS  + +  +L +R +       N++  K    LP+A+ ++
Sbjct: 59  AALKKLSQRNLSERSMARKLSVWRQYCGWLVQRGLMAADPTANLKAPKPPQRLPKAVQQE 118

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
                  N LL+       +  R+ A+  LLYG GLR+SE   L   +++ D+  + + G
Sbjct: 119 PL-----NHLLNQGCGEDALALRDRAVFELLYGSGLRLSEVCGLNLHDVLPDEGWVGVTG 173

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R VPL+     A+L+Y       +    +  LF    G+ L     Q+ ++Q   
Sbjct: 174 KGGKQRRVPLVRKSIDALLDYLPHR---VAAEGEAALFTNKNGRRLGQRQIQKRLQQWAA 230

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G     + H LRHS+A+HLL    D+R++Q +LGH  LSTTQIYT ++ ++    +  
Sbjct: 231 EQGSAQHLSPHMLRHSYASHLLQASRDIRAVQELLGHSNLSTTQIYTKLDLEH----LAA 286

Query: 313 IYDQTHPSITQKDK 326
           +YD+ HP   +K +
Sbjct: 287 VYDEAHPRAKRKKE 300


>gi|161523917|ref|YP_001578929.1| site-specific tyrosine recombinase XerD [Burkholderia multivorans
           ATCC 17616]
 gi|189351322|ref|YP_001946950.1| site-specific tyrosine recombinase XerD [Burkholderia multivorans
           ATCC 17616]
 gi|160341346|gb|ABX14432.1| tyrosine recombinase XerD [Burkholderia multivorans ATCC 17616]
 gi|189335344|dbj|BAG44414.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
          Length = 316

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 86/320 (26%), Positives = 140/320 (43%), Gaps = 17/320 (5%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           +G   P             +   L +E GL++ TL +Y  D   F  +LA   +      
Sbjct: 12  DGTAAPSPALLASRASIDLFCDALWLEHGLARNTLDAYRRDLTLFSQWLAATHD-----A 66

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            +     T +  +I+ R   K    S  R LS  + +  +  +    +    L + + K+
Sbjct: 67  ALDAADETMLTGYIAARSDGK--ATSSNRRLSVFRRYYGWAVREHRASADPTLRIASAKQ 124

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           +   P  L+E Q   L+             +  R+  +L L+Y  GLR+SE ++L    +
Sbjct: 125 AARFPSTLSEAQVEALL-----GAPDIATPLGLRDRTMLELMYASGLRVSELVTLKTVEV 179

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNP 240
             ++  +R+ GKG K R+VP        I  Y     P  L       LF   RG  +  
Sbjct: 180 GLNEGVVRVMGKGSKERLVPFGEVAHGWIERYLREARPALLGARAADALFVTARGDGMTR 239

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             F   I++  ++  +    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+
Sbjct: 240 QQFWNIIKRHAQHADVRAHLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTH 299

Query: 301 VNSKNGGDWMMEIYDQTHPS 320
           V  +     +  ++ Q HP 
Sbjct: 300 VARER----LRTLHAQHHPR 315


>gi|19553231|ref|NP_601233.1| site-specific tyrosine recombinase XerC [Corynebacterium glutamicum
           ATCC 13032]
 gi|62390867|ref|YP_226269.1| site-specific tyrosine recombinase XerC [Corynebacterium glutamicum
           ATCC 13032]
 gi|41326206|emb|CAF20368.1| SITE-SPECIFIC RECOMBINASE [Corynebacterium glutamicum ATCC 13032]
          Length = 315

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 88/312 (28%), Positives = 152/312 (48%), Gaps = 21/312 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
              +L     ++ ++L++  G S  T++ Y  D                TI+ I   S  
Sbjct: 25  APSKLHTLIDDFCEHLDLVVGRSAATIRGYRSDLYAMAD----------TIEDIDNFSLP 74

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R ++     +     +L R  + +K+F  + +K           + + K +  LP+ L
Sbjct: 75  TLRQWLGIAVDEGKSRATLARRTASVKAFSSWAQKNGHLKADEAARLISPKITRDLPKIL 134

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            E+QA   V+N     +   +    R+SAIL LLY  G+R++E   +   +I  D+  +R
Sbjct: 135 GEQQAGDFVEN----AASTNEEEFLRDSAILELLYATGMRVAELCGIDLSDIDYDRKMVR 190

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG+K R+VP   S  KA+  + D+   D        LF G+RG+ +N    +R + +
Sbjct: 191 VLGKGNKERVVPFGESAHKALRNWLDVR--DEMTEDPKALFVGVRGQRINARQVRRIVDR 248

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +  G+    + H+LRH+ ATHLL  G DLR +Q +LGH  + TTQIYT+V++K     
Sbjct: 249 AAKVTGVD-HLSPHSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNKR---- 303

Query: 310 MMEIYDQTHPSI 321
           ++E +++ HP  
Sbjct: 304 LLEAFNKAHPRA 315


>gi|15838026|ref|NP_298714.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa 9a5c]
 gi|34223080|sp|Q9PDF4|XERD_XYLFA RecName: Full=Tyrosine recombinase xerD
 gi|9106440|gb|AAF84234.1|AE003973_2 integrase/recombinase [Xylella fastidiosa 9a5c]
          Length = 324

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 93/311 (29%), Positives = 146/311 (46%), Gaps = 24/311 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L I+ GLS+ TL SY  D      +             +  L+   +  +++ R 
Sbjct: 29  HFLDALWIKHGLSQHTLNSYRRDLEGLARWNNGRAG------PLATLTPPALLDYLTWRT 82

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q     S  R LS +++F  Y  +     ++    + +    + LP+AL E Q   L+ 
Sbjct: 83  QQHYSPLSNARLLSVLRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQIEALLA 142

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              + T         RN A+L L+Y  GLR+SE ++L    +   Q  LRI GKG K R+
Sbjct: 143 APSIETPE-----GLRNRAMLELMYAAGLRVSELVTLPVAMLNRRQGVLRIIGKGGKERL 197

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNI--------QLPLFRGIRGKPLNPGVFQRYIRQLR 251
           VPL    +  +  Y +     L  +          +PLF     K L+   F R+I+   
Sbjct: 198 VPLGEESQHWLQRYLEQARPSLAADKPIPADSDGDVPLFINTTLKRLSRQQFWRWIKHYA 257

Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              G+ P   + H LRHSFATHLL++G DLR++Q +LGH  +STTQIYT +  ++    +
Sbjct: 258 ALAGIAPNKVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTFIARQH----L 313

Query: 311 MEIYDQTHPSI 321
            +++ Q HP  
Sbjct: 314 QQLHAQHHPRA 324


>gi|300173202|ref|YP_003772368.1| tyrosine recombinase XerC [Leuconostoc gasicomitatum LMG 18811]
 gi|299887581|emb|CBL91549.1| tyrosine recombinase XerC [Leuconostoc gasicomitatum LMG 18811]
          Length = 303

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 89/311 (28%), Positives = 150/311 (48%), Gaps = 14/311 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +E+Q +   +E ER  S LTL++Y  D  +F+IFL     +       + +   ++R ++
Sbjct: 4   REQQLYQVYIESERQYSPLTLKAYLSDIDEFVIFLT----KNGGFINFKTVQILDVRVYL 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +K+   ++ R +S ++ F +++   +  T++   N+   K  N LP    E +  
Sbjct: 60  NDLYERKLARTTISRKISSLRMFYQFMIANQFVTDNPFDNVALRKHENHLPEFFYETEMT 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           TL D       +    +  RN+AIL  LY  G R++E  +L    +   Q  + I GKG+
Sbjct: 120 TLFDV----AYNPEDLLWQRNAAILEFLYATGARVAEIANLMTTQLDFSQRLVLIHGKGN 175

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLN--IQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R VP      +A+ +Y       L         +F   RG+P+        + +L + 
Sbjct: 176 KDRYVPFGHFAAQALSQYLKETRPKLIAKQVPHDFVFVNHRGEPITTAGITYILNELMKR 235

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRH+FATHLL+NG D+R++Q +LGH  LSTTQ+YT+V  +N    + + 
Sbjct: 236 STLTGKIHPHMLRHTFATHLLNNGADMRTVQELLGHVNLSTTQMYTHVTREN----LQKN 291

Query: 314 YDQTHPSITQK 324
           Y    P   +K
Sbjct: 292 YQNFFPRAKKK 302


>gi|313159128|gb|EFR58503.1| tyrosine recombinase XerD [Alistipes sp. HGB5]
          Length = 298

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 82/294 (27%), Positives = 139/294 (47%), Gaps = 12/294 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +   +++E+ LS+ T++SY  D RQF  F+    +        R++  T I  +++  
Sbjct: 13  RRYRTYIKLEKRLSQNTVESYMRDLRQFAHFILRQYD-----VAPRKVEGTMIERYMAWL 67

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S  R L GI+SF  +L        S    +   K    LP  L   +  +++
Sbjct: 68  YDRGREKTSQARCLCGIRSFFNFLLVNDQIETSPAEFVDTPKFGRPLPDILTTDEIDSII 127

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                 T         R+SA+L +LY CGLR+SE  SL   ++   +  +R+ GKG+K R
Sbjct: 128 -----ATVDMRSTKGLRDSAMLEVLYSCGLRVSELTSLRLSDLFFGEGYIRVIGKGNKQR 182

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VP+  + R  I  Y +        + +  +F   RG  L   +    +++     G+  
Sbjct: 183 LVPISNTARDKIQRYLEER--RSARSGEETVFLNNRGGQLTRVMVFTILKRAVERAGIDK 240

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             + HT RHSFATHLL  G  +R +Q +LGH  + TT+IYT+++S +    + E
Sbjct: 241 HISPHTFRHSFATHLLEGGASIRQVQEMLGHESILTTEIYTHLDSDHLRRTLEE 294


>gi|302332858|gb|ADL23051.1| site-specific recombinase XerC [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 298

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 83/309 (26%), Positives = 149/309 (48%), Gaps = 16/309 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +L  L++ER  S+ TL+SY+ D  QF  FL     +      +    Y + R ++S 
Sbjct: 5   QEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLQ------LNTFEYRDARNYLSY 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             +  +   S+ R +S +++F +Y         +  + + + KK   LP+   E++   L
Sbjct: 59  LYSNHLKRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEAL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                  T  E      R+  IL LLY  G+R+SE +++  Q+I    + + + GKG K 
Sbjct: 119 F-----KTVEEDTSKSLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R VP     R++I  Y +     +       L   ++G+ +     +  +  + +     
Sbjct: 174 RFVPFGAYCRQSIENYLEH-FKPIQSCKHDFLIVNMKGEAITERGVRYVLNDIVKRTAGV 232

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++     + ++Y   
Sbjct: 233 SEIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ----LRKVYLNA 288

Query: 318 HPSITQKDK 326
           HP   ++++
Sbjct: 289 HPRAKKENE 297


>gi|300692939|ref|YP_003753934.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07]
 gi|299079999|emb|CBJ52674.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07]
          Length = 329

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 91/324 (28%), Positives = 154/324 (47%), Gaps = 29/324 (8%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           +   +L  L+ ER LS+ TL SY  +       L     +      + QL    IR  ++
Sbjct: 19  QIAAYLDTLKFERQLSQHTLASYAREL----AVLQQLGAQFAAGIDLMQLQPHHIRRMMA 74

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNILNMRNLKKSNSLPRALNEKQAL 135
           +     +  RS+ R+LS  + + ++L  R    T + +  +R  K    LP+AL+ +QA+
Sbjct: 75  QLHGGGLSGRSIARALSAWRGWYRWLALRDAAVTANPVDGVRAPKSPKKLPKALSVEQAV 134

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-----------MDD 184
            L++ +        +     + A+  L Y CGLR+SE + L  +++             D
Sbjct: 135 ALMEQLPGDDPETVR-----DRAVNELFYSCGLRLSELVGLDLRHVRAGDYESASWLDLD 189

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNP 240
              + + GKG K R VP+     +A++ +      L   D        LF   RGK L  
Sbjct: 190 TREVMVLGKGSKRRTVPVGRKAAEALVAWLAARPQLARPDAAPEDAHALFLSARGKRLAQ 249

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              Q  +++     G+P     H LRHSFATH+L + GDLR++Q +LGH  +++TQ+YT+
Sbjct: 250 RQIQMRMKRNAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTS 309

Query: 301 VNSKNGGDWMMEIYDQTHPSITQK 324
           ++ ++    + +IYDQ HP   +K
Sbjct: 310 LDFQH----LAKIYDQAHPRAKKK 329


>gi|282916512|ref|ZP_06324270.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           D139]
 gi|283770316|ref|ZP_06343208.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus H19]
 gi|282318999|gb|EFB49351.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           D139]
 gi|283460463|gb|EFC07553.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus H19]
          Length = 298

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 84/309 (27%), Positives = 150/309 (48%), Gaps = 16/309 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +L  L++ER  S+ TL+SY+ D  QF  FL     +      +    Y + R ++S 
Sbjct: 5   QEAFLNTLKVERNFSEHTLKSYKDDLIQFNQFLEQEHLQ------LNTFEYRDARNYLSY 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             +  +   S+ R +S +++F +Y         +  + + + KK   LP+   E++   L
Sbjct: 59  LYSNHLKRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEAL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                  T  E      R+  IL LLY  G+R+SE +++  Q+I    + + + GKG K 
Sbjct: 119 F-----KTVEEDTSKSLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R VP     R++I  Y +      + N    L   ++G+ +     +  +  + +     
Sbjct: 174 RFVPFGAYCRQSIENYLEHFKPIQSCNHDF-LIVNMKGEAITERGVRYVLNDIVKRTAGV 232

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++     + ++Y   
Sbjct: 233 SEIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ----LRKVYLNA 288

Query: 318 HPSITQKDK 326
           HP   ++++
Sbjct: 289 HPRAKKENE 297


>gi|258405471|ref|YP_003198213.1| tyrosine recombinase XerD [Desulfohalobium retbaense DSM 5692]
 gi|257797698|gb|ACV68635.1| tyrosine recombinase XerD [Desulfohalobium retbaense DSM 5692]
          Length = 306

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 80/310 (25%), Positives = 143/310 (46%), Gaps = 16/310 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
             +  ++++L + +GL+  ++ +Y  D   F+ FL    E      ++          F+
Sbjct: 13  AWKDAYVEHLLVIKGLADPSVAAYVQDIEMFIQFLEQKGE------SVATCDANAFLYFL 66

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
              +++ + +R++ R LS ++ F ++L+      +    ++   K +  LP  L+ ++  
Sbjct: 67  LHLKSRGLTNRTIARHLSSLRGFFQFLQTSNRRVDDPTAHVDGPKLTRQLPEFLDVQEM- 125

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
                 LL        +  R+  IL LLY  GLR+SE + L   +I      +R+ GKG 
Sbjct: 126 ----QGLLAQPDTGTKLGFRDRTILELLYAAGLRVSEVIRLQALDIDSQTGVVRVWGKGA 181

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R+VPL P+    +  Y            ++ LF    G+ L+     + +++     G
Sbjct: 182 KERLVPLHPAALDYVRTYVQAWRPQFAPQHKV-LFLNRSGRCLSRQAVWKNVKRYAVAAG 240

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  S + HT+RHSFATHLL  G DLR++Q +LGH  +S T+IYT+V        +   + 
Sbjct: 241 IRRSISPHTIRHSFATHLLEGGADLRTVQLLLGHADISATEIYTHV----QAGRLRAAHQ 296

Query: 316 QTHPSITQKD 325
             HP    K 
Sbjct: 297 DHHPRTRIKP 306


>gi|152981084|ref|YP_001352164.1| integrase/recombinase [Janthinobacterium sp. Marseille]
 gi|151281161|gb|ABR89571.1| integrase/recombinase [Janthinobacterium sp. Marseille]
          Length = 301

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 140/305 (45%), Gaps = 16/305 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E   +   L +E GL+K +L++Y  D R F  +L          +++      ++  +  
Sbjct: 11  EIDEFCDTLWLEDGLAKNSLEAYRRDLRLFATWLQQERG-----KSLLAAHTEDLNGYFF 65

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            +        S  R L+ +K F +   ++    +   L +R+ K+   +P+ L+E Q   
Sbjct: 66  AKHATTKATSS-NRRLAVLKRFYQLALRQNKIKDDPCLRLRSAKQPPRMPKTLSEAQVEA 124

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L     L        +  R+  +L L+Y  GLR++E + L    +  ++  LR+ GKG K
Sbjct: 125 L-----LAAPDVNTPLGLRDRTMLELMYASGLRVTELVLLKSVEVGMNEGVLRVTGKGGK 179

Query: 197 IRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R++P     R  I  Y        LN  +   LF   RG  +   +F   I++      
Sbjct: 180 TRLIPFGEEARAWIERYLKEARGAILNGQMDDALFVTARGGAMTRQMFWTLIKKHAAAAD 239

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++ 
Sbjct: 240 INAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LKRLHQ 295

Query: 316 QTHPS 320
             HP 
Sbjct: 296 MHHPR 300


>gi|259500641|ref|ZP_05743543.1| integrase/recombinase XerC [Lactobacillus iners DSM 13335]
 gi|302191330|ref|ZP_07267584.1| integrase/recombinase CodV [Lactobacillus iners AB-1]
 gi|259168025|gb|EEW52520.1| integrase/recombinase XerC [Lactobacillus iners DSM 13335]
          Length = 307

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 84/318 (26%), Positives = 148/318 (46%), Gaps = 19/318 (5%)

Query: 15  LKERQNWLQ----NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           +K+  ++L+     L+ ER  S  T ++Y  D  +   F      E        +LS  +
Sbjct: 1   MKQADDFLKLYYNYLKNERNYSINTCKAYMDDLSEARTFFV----ENGGFIDWLKLSSRD 56

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           I  FI     +K    +  R +S ++SF ++L KR I   + +  +    +   LP  L 
Sbjct: 57  IEIFIQYLAQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGEHKKLPEFLY 116

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             + + ++ ++       T  +  RN A+L L Y  G+R+SE  +L    I  + + + +
Sbjct: 117 SDEMVKVLKSI-----STTTPLGLRNMALLELFYATGMRVSEISNLKLDQIDFELNLILV 171

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIR 248
            GKG+K R V      + A+  Y       L L+      +F    G  +     +  I+
Sbjct: 172 HGKGNKDRYVAFGEEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNRITSRGLEYIIK 231

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            +    G+  S   H LRH+FAT +L+NG DLR++Q +LGH  +STTQIYT+V  ++   
Sbjct: 232 NIFLNAGVSASVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQH--- 288

Query: 309 WMMEIYDQTHPSITQKDK 326
            + +IY +  P   ++++
Sbjct: 289 -LCDIYHKYFPRDNKENE 305


>gi|297621664|ref|YP_003709801.1| Site-specific tyrosine recombinase XerC [Waddlia chondrophila WSU
           86-1044]
 gi|297376965|gb|ADI38795.1| Site-specific tyrosine recombinase XerC [Waddlia chondrophila WSU
           86-1044]
          Length = 301

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 76/302 (25%), Positives = 142/302 (47%), Gaps = 10/302 (3%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            ++  L + +  S+ T+++Y  D   F   L    +       + ++   +IR F++   
Sbjct: 10  RFIHQLRVVKNASEHTIRNYAIDLNIFKQHLEQEWQSDEDF-ALNRIERRQIRGFLAMMN 68

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           ++    R++ R LS +++F K+    ++ T + I  + + K   ++P  L+  Q      
Sbjct: 69  SKGASKRTILRRLSSLRTFFKWAFANQLITSNPIEEIESPKLEKTIPTPLSYTQVE---- 124

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             L         + +R+  ++ L Y  GLR+SE + L   ++      ++++GKG K R+
Sbjct: 125 -HLFSLPEIETLLGSRDRCMMELFYSSGLRVSELVGLNKNDVDITTRLMKVRGKGKKERV 183

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +P+  +    I +Y        +      +F    G  L+     R  ++     GL  +
Sbjct: 184 IPVTHNAVYWIQKYLRHPERKFSCEENHAIFLNKLGTRLSVRSVDRNFKRYLIKSGLGGN 243

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T HT+RH+ ATH L NG DL++IQ++LGH  LS+T IYT+V++        +IY Q HP
Sbjct: 244 VTPHTIRHTIATHWLENGMDLKTIQTLLGHESLSSTTIYTHVDATLK----RKIYKQAHP 299

Query: 320 SI 321
             
Sbjct: 300 RA 301


>gi|323489572|ref|ZP_08094799.1| tyrosine recombinase xerC [Planococcus donghaensis MPA1U2]
 gi|323396703|gb|EGA89522.1| tyrosine recombinase xerC [Planococcus donghaensis MPA1U2]
          Length = 297

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 85/310 (27%), Positives = 155/310 (50%), Gaps = 15/310 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E  K  ++++  +++E+  S+ T+  YE D   F +FL         +  IR++ Y   R
Sbjct: 2   EKEKMLESFMSYIQLEKNYSEHTVHHYEHDLADFFLFLNAE-----GVPDIREVEYIHAR 56

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            +++K    K+   ++ R +S I+SF +Y  +     E+   ++ + KK   LP+   E+
Sbjct: 57  NYVTKLYDAKLSRTTVSRKISAIRSFFRYANREYGLDEAAFRSLYHPKKEERLPQFFYEE 116

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L  +VL         +  RN+A+L LLY  G+R+SE +S+   ++      +++ G
Sbjct: 117 ELAQLFKSVL-----GDDKLSIRNTALLELLYATGMRVSECVSIRLTDLDQTMQIVKVMG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG K R +P     + A+  Y  D  P  +       LF   RG+ +     +  + +  
Sbjct: 172 KGRKERYIPYGQFAQDALEHYLEDARPKLMKKQDHDYLFVNSRGEAVTDRGIRHILSECM 231

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +   +  S   H +RH+FATHL++NG D+R++Q +LGH  LS+TQ+YT+V  ++    + 
Sbjct: 232 KKASVNSSIYPHMIRHTFATHLINNGADIRTVQELLGHSHLSSTQVYTHVTKEH----LR 287

Query: 312 EIYDQTHPSI 321
             Y  +HP  
Sbjct: 288 NTYLNSHPRA 297


>gi|83595882|gb|ABC25244.1| tyrosine recombinase xerC [uncultured marine bacterium Ant4D3]
          Length = 312

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 84/315 (26%), Positives = 146/315 (46%), Gaps = 16/315 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            +  L    Q +L  L   +  S  T+ +Y  D ++ +  L     E             
Sbjct: 4   PNAPLNHVVQQYLDYLAYNKRYSPHTINAYARDMQRLIETL-----EDQGHGMWADAQAD 58

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            IR  +   R   +  +S++R LS  +SF  YL ++ +   + +  +R  K    LP +L
Sbjct: 59  TIRDAMVTARKTHLAPKSIQRILSSWRSFFTYLLQQNLVKLNPVDGIRAPKSPRKLPNSL 118

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  Q   +++  +         +  R+ A+L L Y CGLR++E  SL   +I    ++L 
Sbjct: 119 DPDQISQVLNATITS----DDPMAMRDKAMLELTYSCGLRLAELASLNVFDIDLTDASLI 174

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG+K R +P+      A+  +       L  +    LF   RG+ +     Q  +  
Sbjct: 175 VTGKGNKTRQLPIGRQAITALKSWLQQR-GQLKCHDANALFINHRGQRMGVRGIQMRMAN 233

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           +    G       H LRHSFA+HLL + GDLR++Q +LGH  +STTQ+YT+++ ++    
Sbjct: 234 MAATHG--QHIHPHMLRHSFASHLLQSSGDLRAVQELLGHSNISTTQVYTHLDYQH---- 287

Query: 310 MMEIYDQTHPSITQK 324
           + ++YD+ HP   +K
Sbjct: 288 LAKVYDKAHPRAQEK 302


>gi|300726218|ref|ZP_07059671.1| tyrosine recombinase XerC [Prevotella bryantii B14]
 gi|299776415|gb|EFI72972.1| tyrosine recombinase XerC [Prevotella bryantii B14]
          Length = 293

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 78/304 (25%), Positives = 138/304 (45%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L  L+ E   S+ T+QSY  D R F  +     +      +   +    +R +I  
Sbjct: 3   IEDFLDYLQFELNRSERTVQSYGDDLRAFQSYFEGLDDH----LSWESVDSDVVRGWIEL 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S+ R LS +++F ++   RK      +  ++  K+   LP+ L E +   L
Sbjct: 59  MMDKGNSATSINRRLSALRTFYRFALSRKRVESDPVHMIKGPKRGKPLPQFLKENEMNAL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D       H   + D R+  I+   Y  G+R+SE + L   ++   +  L++ GK +K 
Sbjct: 119 LDT----AMHGESFYDVRDRTIIMTFYETGIRLSELIGLDDNDVDFQKGELKVTGKRNKQ 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RI+P    +  A+  Y  L    +  N  L LF   +G  LN    +  +++    +   
Sbjct: 175 RIIPFGNELASALTIYMKLRDEFIG-NTSLALFVSNKGCRLNGNQVRYLVQKNLSRVSTL 233

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FAT +L++   L S++ +LGH  LSTT+IYT+   +     +  IY   
Sbjct: 234 KKRSPHVLRHTFATAMLNHEAGLESLKKLLGHASLSTTEIYTHTTFEQ----LKRIYSNA 289

Query: 318 HPSI 321
           HP  
Sbjct: 290 HPRA 293


>gi|312872353|ref|ZP_07732423.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           2062A-h1]
 gi|312873924|ref|ZP_07733960.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           2052A-d]
 gi|329921329|ref|ZP_08277767.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN 1401G]
 gi|311090473|gb|EFQ48881.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           2052A-d]
 gi|311092176|gb|EFQ50550.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           2062A-h1]
 gi|328934621|gb|EGG31125.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN 1401G]
          Length = 307

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 83/318 (26%), Positives = 148/318 (46%), Gaps = 19/318 (5%)

Query: 15  LKERQNWLQ----NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           +K+  ++L+     L+ ER  S  T ++Y  D  +   F      E        +LS  +
Sbjct: 1   MKQADDFLKLYYNYLKNERNYSINTCKAYMDDLSEARTFFV----ENGGFIDWLKLSSRD 56

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           I  FI     +K    +  R +S ++SF ++L KR I   + +  +       +LP  L 
Sbjct: 57  IEIFIQYLAQKKYKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGDHKNLPEFLY 116

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             + + ++ ++       T  +  RN A+L L Y  G+R+SE  +L    +  + + + +
Sbjct: 117 SDEMVKVLKSI-----STTTPLGLRNMALLELFYATGMRVSEIANLKLDQVDFELNLILV 171

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIR 248
            GKG+K R V      + A+  Y       L L+      +F    G  +     +  I+
Sbjct: 172 HGKGNKDRYVAFGEEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNMITSRGLEYIIK 231

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            +    G+  S   H LRH+FAT +L+NG DLR++Q +LGH  +STTQIYT+V  ++   
Sbjct: 232 NIFLNAGISASVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQH--- 288

Query: 309 WMMEIYDQTHPSITQKDK 326
            + +IY +  P   ++++
Sbjct: 289 -LCDIYHKYFPRDNKENE 305


>gi|27467846|ref|NP_764483.1| xerC protein [Staphylococcus epidermidis ATCC 12228]
 gi|57866718|ref|YP_188400.1| tyrosine recombinase XerC [Staphylococcus epidermidis RP62A]
 gi|282876316|ref|ZP_06285183.1| tyrosine recombinase XerC [Staphylococcus epidermidis SK135]
 gi|34222792|sp|Q7ZAJ4|XERC_STAES RecName: Full=Tyrosine recombinase xerC
 gi|81674902|sp|Q5HPU0|XERC_STAEQ RecName: Full=Tyrosine recombinase xerC
 gi|27315391|gb|AAO04525.1|AE016747_22 xerC protein [Staphylococcus epidermidis ATCC 12228]
 gi|57637376|gb|AAW54164.1| tyrosine recombinase XerC [Staphylococcus epidermidis RP62A]
 gi|281295341|gb|EFA87868.1| tyrosine recombinase XerC [Staphylococcus epidermidis SK135]
 gi|329736214|gb|EGG72486.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU028]
 gi|329736604|gb|EGG72870.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU045]
          Length = 296

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 80/311 (25%), Positives = 153/311 (49%), Gaps = 18/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + K ++ +L  L++ER  S+ TL+SY  D  QF  FL     +      +    Y + R 
Sbjct: 1   MDKIQETFLYMLKVERNFSEYTLKSYHDDLVQFNNFLEREHLQ------LETFEYKDARN 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++   + ++   ++ R +S +++F ++   +  +  +  + + + KK   LP+   E++
Sbjct: 55  YLAFLYSNQLKRTTVSRKISTLRTFYEFWMTQDNSIINPFVQLVHPKKEKYLPQFFYEEE 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L       T         R+  I+ LLY  G+R+SE +++  ++I  +   +++ GK
Sbjct: 115 MEALF-----QTVEHDNKKGIRDKVIIELLYATGIRVSELINIKLKDIDMNLPGVKVLGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R +P     R++I  Y +       L     L   ++G P+     +  +  + + 
Sbjct: 170 GNKERFIPFGEFCRQSIERYLEE-FQPKQLANHDYLIVNMKGDPITERGVRYVLNDVVKR 228

Query: 254 -LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+      H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++     + +
Sbjct: 229 TAGVN-DIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQ----LRK 283

Query: 313 IYDQTHPSITQ 323
           +Y   HP   +
Sbjct: 284 VYLNAHPRAKK 294


>gi|224537800|ref|ZP_03678339.1| hypothetical protein BACCELL_02683 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520620|gb|EEF89725.1| hypothetical protein BACCELL_02683 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 294

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 73/302 (24%), Positives = 144/302 (47%), Gaps = 13/302 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L+ ER  S+ T++SY  D  QF  F      E+I    +  +    +R +I    
Sbjct: 6   SFLDYLQYERNYSEETIKSYREDLCQFEKFAR----EEIGDSALSGVKAELVREWIVSLM 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +     S+ R LS ++SF K+L ++     + +  +   K    LP  L E +   L+D
Sbjct: 62  DKGYTSTSINRKLSSLRSFYKFLLRKGEVCVNPLQKITGPKNKKPLPTFLRESEMDKLLD 121

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                      +   R+  I+ + Y  G+R+SE + L  +N+      +++ GK +K R+
Sbjct: 122 ----EVDFGEGFKGCRDHMIIEMFYATGMRLSELIGLDDKNVDFSSLLIKVTGKRNKQRL 177

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +P    ++ A++EY ++    +        F    G+ L+  + +  +++    +     
Sbjct: 178 IPFGEELKNAMIEYVNVRNEIVQART-DAFFVRESGERLSRSIVENLVKRNLSKVVTLKK 236

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + H LRH+FAT +L++  +L +I+ +LGH  L+TT++YT+   +     + ++Y+Q HP
Sbjct: 237 RSPHVLRHTFATTMLNHDAELGAIKELLGHESLATTEVYTHTTFEE----LKKVYNQAHP 292

Query: 320 SI 321
             
Sbjct: 293 RA 294


>gi|118467405|ref|YP_888043.1| site-specific tyrosine recombinase XerD [Mycobacterium smegmatis
           str. MC2 155]
 gi|118168692|gb|ABK69588.1| tyrosine recombinase XerD [Mycobacterium smegmatis str. MC2 155]
          Length = 318

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 86/317 (27%), Positives = 149/317 (47%), Gaps = 19/317 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L ++ Q +L +L IERG++  TL SY  D R++   L      +  I  + +++ +++  
Sbjct: 11  LDEQVQGYLDHLTIERGVAANTLSSYRRDLRRYAEHL-----RQRGIDDLARVAESDVSD 65

Query: 74  FISKRRTQK-------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           F+   R          +   S  R++  ++   ++     +T       ++    S  LP
Sbjct: 66  FLVALRRGDPDAGVTALSAVSAARAVVAVRGLHRFAAAEGLTENDVARAVKPPTPSRRLP 125

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           ++L   + L L++     +  ++  +  RN A+L LLY  G RISEA+ L   ++     
Sbjct: 126 KSLTLDEVLALLEAAGGDSEADS-PLTLRNRALLELLYSTGARISEAVGLDVDDVDTQAR 184

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQ 244
           ++ + GKG K R+VP+      A+  Y      DL    +    +F   RG  L+     
Sbjct: 185 SVLLHGKGGKQRLVPIGRPAVSALDAYLVRGRPDLARRGRGTPAIFLNARGGRLSRQSAW 244

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + ++      G+  + + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V   
Sbjct: 245 QVLQDSAERAGIASAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVT-- 302

Query: 305 NGGDWMMEIYDQTHPSI 321
                + E++   HP  
Sbjct: 303 --VHTLREVWAGAHPRA 317


>gi|261364802|ref|ZP_05977685.1| tyrosine recombinase XerC [Neisseria mucosa ATCC 25996]
 gi|288566830|gb|EFC88390.1| tyrosine recombinase XerC [Neisseria mucosa ATCC 25996]
          Length = 299

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 84/317 (26%), Positives = 154/317 (48%), Gaps = 18/317 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +++ +       +L+ L  ++G S  TL +Y  D  + +  L   + E     T + L+ 
Sbjct: 1   MLARDFGLSLDGYLKMLG-QQGKSAHTLSAYGRDLTELVRLLTEGSSE-----TAQDLTR 54

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            +  A + +   Q + +R+L R LS  + +  +L +  +      +N++  +    LP+A
Sbjct: 55  RDFVAALKRLSQQGLSERTLARKLSAWRQYCGWLVQSSMMDNDPTVNLKAPRLPERLPKA 114

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L +++   ++DN           +  R+ A+  L+YG GLR+SE   L   +++ D+  +
Sbjct: 115 LPQEELNHMLDNTPA-----DDGLAVRDHALFELMYGSGLRLSEIHGLDLGDVLLDEGWV 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R VPL     +A+  Y       +  + +  LF G  G  L     Q+ ++
Sbjct: 170 SVTGKGRKERQVPLSGKSVEALRAYLSER---VAADGETALFTGKNGTRLGQRQIQKRLQ 226

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                 G     + H +RHS+A+HLL +  D+R++Q +LGH  LSTTQIYT ++     D
Sbjct: 227 AWAVQQGSGQHISPHMMRHSYASHLLQSSRDIRAVQELLGHSNLSTTQIYTKLDF----D 282

Query: 309 WMMEIYDQTHPSITQKD 325
            + ++YD+ HP   +K 
Sbjct: 283 HLAKVYDEGHPRAKRKK 299


>gi|167569023|ref|ZP_02361897.1| site-specific tyrosine recombinase XerD [Burkholderia oklahomensis
           C6786]
          Length = 325

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 83/301 (27%), Positives = 135/301 (44%), Gaps = 17/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   + +E GLS+ TL +Y  D + F  +LA    E      +   +   +  +I+ R  
Sbjct: 40  FCDAMWLEHGLSRNTLDAYRRDLQLFAQWLAAQHAEN-----VDHANEAMLTGYIAARSD 94

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            K    S  R LS  + +  +  +         L + + K++   P  L+E Q   L+  
Sbjct: 95  GK--ATSSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALL-- 150

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                      +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+V
Sbjct: 151 ---AAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKSVEVGLNEGVVRVTGKGSKERLV 207

Query: 201 PLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P        I  Y     P  L       LF   RG  +    F   I++  +   +   
Sbjct: 208 PFGEVAHGWIERYLRDGRPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAH 267

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++   HP
Sbjct: 268 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LKTLHAAHHP 323

Query: 320 S 320
            
Sbjct: 324 R 324


>gi|116872710|ref|YP_849491.1| integrase/recombinase XerC [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123463735|sp|A0AI80|XERC_LISW6 RecName: Full=Tyrosine recombinase xerC
 gi|116741588|emb|CAK20712.1| integrase/recombinase XerC [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 300

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 81/308 (26%), Positives = 143/308 (46%), Gaps = 15/308 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q +L  L  ER  S  T  +YE D   F  FL      +  I   +Q+++ ++R ++
Sbjct: 6   KLEQQFLNYLHSERNYSVNTSTAYENDILDFRRFL-----NEQAISEYQQVTFLDVRIYL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++ + +     ++ R +S ++SF  +L +  + +E+    + + K    LP+    ++  
Sbjct: 61  TELKQKSFSRTTVARKISSLRSFYTFLLRENVISENPFTYVSHAKNQLRLPKFFYSEEME 120

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L   V      + + +  R+  +L +LYG G+R+SE   +   ++      + I+GKG+
Sbjct: 121 ALFQVVY----EDNETLTLRDRVLLEVLYGTGIRVSECAGILLSDLDTSYQAILIRGKGN 176

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R VP       AI +Y       +         L     G PL     +  + ++   
Sbjct: 177 KERYVPFGAYAEDAITDYLSSRTELMIRFKKEHDSLLINHYGDPLTTRGIRYCLTKIISK 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRH+FAT LL+NG D+R++Q +LGH  LS+TQIYT+V  ++    +   
Sbjct: 237 ASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----LKST 292

Query: 314 YDQTHPSI 321
           Y + HP  
Sbjct: 293 YMKHHPRA 300


>gi|114798167|ref|YP_761981.1| putative tyrosine recombinase XerC [Hyphomonas neptunium ATCC
           15444]
 gi|114738341|gb|ABI76466.1| putative tyrosine recombinase XerC [Hyphomonas neptunium ATCC
           15444]
          Length = 299

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 119/302 (39%), Positives = 184/302 (60%), Gaps = 8/302 (2%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L  ER ++  T+++Y  D   FL FL  +   + +   +  +   +IRA++++RR
Sbjct: 6   AFLDYLTRERRMATKTVEAYGSDLSFFLAFLRVHMGAEPSPALLADVRARDIRAYLAERR 65

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + + D ++ R LS IK+  ++L +      + +  ++  ++   LPR ++   A  L+ 
Sbjct: 66  REGLSDATVARILSSIKALYRWLDRAHGVGNAEVGYLQGPRRPQRLPRPVSIDAAKDLIS 125

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
               +   +  WI AR++A+L LLYG GLRISEALSLT  + +     LRI+GKG K+RI
Sbjct: 126 EAE-NEPDQEPWIGARDAAVLSLLYGGGLRISEALSLTGAD-VPAPERLRIKGKGGKVRI 183

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPL+P+VR AI  Y D+CP+ L  +   PLFRG +G  LNP + Q  ++++R YLGLP +
Sbjct: 184 VPLIPAVRDAIHVYADICPWALTRDK--PLFRGAKGGALNPRLIQGLMQRMRAYLGLPDT 241

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T H LRH+FATHLL+NG DLR+IQ++LGH  LSTTQ+YT ++S      + E++   HP
Sbjct: 242 ATPHALRHAFATHLLANGADLRAIQTLLGHASLSTTQVYTGIDSSR----LREVHAAAHP 297

Query: 320 SI 321
             
Sbjct: 298 RA 299


>gi|319900908|ref|YP_004160636.1| tyrosine recombinase XerC subunit [Bacteroides helcogenes P 36-108]
 gi|319415939|gb|ADV43050.1| tyrosine recombinase XerC subunit [Bacteroides helcogenes P 36-108]
          Length = 294

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 72/303 (23%), Positives = 145/303 (47%), Gaps = 13/303 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L  L  ER  S+ T++ Y  D  +   F     EE +   T   +    +R +I+  
Sbjct: 5   DSFLDYLLYERNYSEGTVKYYRADILELQKF----GEEMLGDLTPSDVDAELVREWITFL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     ++ R LS I+++ ++L +R +     +  +   KK   LP  L + +   L+
Sbjct: 61  MDKGCASNTVNRKLSSIRTYYRFLLQRGMVAMDPLQKIVGPKKKKPLPTFLRQGEMDRLL 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D++         +   R+  I+ + Y  G+R+SE + L  +++    S +++ GK +K R
Sbjct: 121 DDIDF----GEGFKGCRDRMIIEMFYATGMRLSELIGLNDKDVDFSASLIKVTGKRNKQR 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++P    +  ++ +Y ++    + +      F    G+ L   + +  +++    +    
Sbjct: 177 LIPFDKELELSMRKYVNVRNEAIPIRT-DAFFVRKNGRRLYRSIVEYLVKRNLSKVVTVK 235

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FAT +L+NG DL SI+ +LGH  L+TT+IYT+   +     + ++Y+Q H
Sbjct: 236 KRSPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEIYTHTTFEE----LKKVYNQAH 291

Query: 319 PSI 321
           P  
Sbjct: 292 PRA 294


>gi|313139852|ref|ZP_07802045.1| site-specific tyrosine recombinase XerC [Bifidobacterium bifidum
           NCIMB 41171]
 gi|313132362|gb|EFR49979.1| site-specific tyrosine recombinase XerC [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 351

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 91/340 (26%), Positives = 150/340 (44%), Gaps = 46/340 (13%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           +   +L  L   RGLS  T+++Y  D R+ L  LA        I  +RQ++  ++R +++
Sbjct: 23  DLSAFLAYLRANRGLSGNTVKAYGTDVRECLHALASR-----GIADLRQVTTDDLRGWMA 77

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              T+     S+ R +  ++SF  +  +           +   K  ++LP  L E QA  
Sbjct: 78  F-ETRDHARSSMARKVVSVRSFFAWAHEHGRIEADPAAVLMTPKLPDTLPSVLTEAQAER 136

Query: 137 LVDNVLLHTS-----------------------------HETKWIDARNSAILYLLYGCG 167
           L+D V    S                                + +  R++A+L LLY  G
Sbjct: 137 LMDRVDDDASLHAASSQRYETRHDEMPRLDSAHRGEGMSQRDEVVALRDAAMLELLYATG 196

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY------YDLCPFDL 221
           +R++E + L   ++     T+R+ GKG K R+VP      KA+  +        L     
Sbjct: 197 IRVAELVGLDIGDVDWSHRTIRVTGKGSKQRVVPFGDPAEKALAGWKEHGRPLILRRAGA 256

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
                  LF G+RG+ ++  + +  + +  R  G+P   + H+LRHS ATH+L  G DLR
Sbjct: 257 GTLDTAALFLGMRGRRIDQRIVRDVVHRAARESGVP-DISPHSLRHSAATHMLDGGADLR 315

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            +Q +LGH  L TTQ YT+V+ +     + E Y Q  P  
Sbjct: 316 EVQEMLGHSSLRTTQRYTHVSIEQ----LKERYRQAFPRA 351


>gi|329733650|gb|EGG69978.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           21193]
          Length = 298

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 86/309 (27%), Positives = 151/309 (48%), Gaps = 16/309 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +  +L  L++ER  S+ TL+SY+ D  QF  FL     E      +    Y + R ++S 
Sbjct: 5   QDAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLE------LNTFEYRDARNYLSY 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             +  +   S+ R +S +++F +Y         +  + + + KK   LP+   E++    
Sbjct: 59  LYSNHLKRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEME-- 116

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
              VL  T  E    + R+  IL LLY  G+R+SE +++  Q+I    + + + GKG K 
Sbjct: 117 ---VLFKTVEEDTSKNLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R VP     R++I  Y +      + N    L   ++G+ +     +  +  + +     
Sbjct: 174 RFVPFGAYCRQSIENYLEHFKPIQSCNHDF-LIVNMKGEAITERGVRYVLNDIVKRTAGV 232

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++     + ++Y   
Sbjct: 233 SEIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ----LRKVYLNA 288

Query: 318 HPSITQKDK 326
           HP   ++++
Sbjct: 289 HPRAKKENE 297


>gi|257063755|ref|YP_003143427.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
 gi|256791408|gb|ACV22078.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
          Length = 313

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 81/308 (26%), Positives = 138/308 (44%), Gaps = 15/308 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
            LK   ++   +   +  S  T+++Y  D   F  +      + +      +++Y ++R 
Sbjct: 19  YLKHVDDYCLEMAQVKNASAHTVRNYRIDLLDFGRWAVRCHVDPM------RITYRQVRR 72

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++ +    +   +++ R LS IK   +++    +     +  ++  K +  LPR +    
Sbjct: 73  YLGELTQAQYSRKTINRRLSAIKGLFRWMNLTGVIDSDPVSVIQGPKSAKGLPRMIPASD 132

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++              D RN AIL  LY CG RISEA  L   ++  D   +++ GK
Sbjct: 133 MGRILTVY----KDSDDPADMRNQAILEFLYACGARISEASGLMLADVDFDAKQVKVFGK 188

Query: 194 GDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K RI+PL     K +  Y +   P  L        F   RG  + P   ++  +    
Sbjct: 189 GSKERIIPLHDMAVKTMKSYAWRARPVLLKGKPNEFFFVSTRGNRMGPDAMRKMFKNTLI 248

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+  S T H +RH+FAT L+  G DL+S+Q +LGH  LSTTQIYT+++     D + +
Sbjct: 249 MAGVDTSYTPHDMRHTFATDLVEGGADLKSVQEMLGHESLSTTQIYTHLS----VDHLKQ 304

Query: 313 IYDQTHPS 320
              Q HP 
Sbjct: 305 AVHQAHPR 312


>gi|312875471|ref|ZP_07735474.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           2053A-b]
 gi|325912823|ref|ZP_08175201.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 60-B]
 gi|311088982|gb|EFQ47423.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           2053A-b]
 gi|325477816|gb|EGC80950.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 60-B]
          Length = 307

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 83/318 (26%), Positives = 147/318 (46%), Gaps = 19/318 (5%)

Query: 15  LKERQNWLQ----NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           +K+  ++L+     L+ ER  S  T ++Y  D  +   F      E        +LS  +
Sbjct: 1   MKQADDFLKLYYNYLKNERNYSINTCKAYMDDLSEARTFFV----ENGGFIDWIKLSSRD 56

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           I  FI     +K    +  R +S ++SF ++L KR I   + +  +        LP  L 
Sbjct: 57  IEIFIQYLAQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGDHKKLPEFLY 116

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             + + ++ ++       T  +  RN A+L L Y  G+R+SE  +L  + I  + + + +
Sbjct: 117 NDEMVKVLKSI-----STTTPLGLRNMALLELFYATGMRVSEIANLKLEQIDFELNLILV 171

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            GKG+K R V      + A+  Y         L+      +F    G  +     +  I+
Sbjct: 172 HGKGNKDRYVAFGEEAKTALNNYLVEARKKILLHKTDYGYVFLNSNGNRITSRGLEYIIK 231

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            +    G+  S   H LRH+FAT +L+NG DLR++Q +LGH  +STTQIYT+V  ++   
Sbjct: 232 NIFLNAGVSASVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQH--- 288

Query: 309 WMMEIYDQTHPSITQKDK 326
            + +IY +  P   ++++
Sbjct: 289 -LCDIYHKYFPRDNKENE 305


>gi|283782972|ref|YP_003373726.1| site-specific tyrosine recombinase XerC [Gardnerella vaginalis
           409-05]
 gi|283441162|gb|ADB13628.1| site-specific tyrosine recombinase XerC [Gardnerella vaginalis
           409-05]
          Length = 322

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 85/320 (26%), Positives = 156/320 (48%), Gaps = 19/320 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +  + +    +++  +   +GL + T ++Y  D  Q L +   +         I +L+  
Sbjct: 14  LPSKYMSLIDDYIDYVRANKGLGERTQKAYASDILQCLAWCNRH-----GFNNISELTTD 68

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++R++++   ++     SL R +  ++ F  + +  +  + +    +   K  N LP  L
Sbjct: 69  DLRSWMAD-ESRSHARSSLARKVVAVRGFFAWCQHVEYISGNPAEILMTSKIKNMLPSVL 127

Query: 130 NEKQALTLVDNVLLHT------SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           +E QA +L++NV              K +  RN+AIL LLY  G+R+ E  SL  Q+I  
Sbjct: 128 DEYQAESLMNNVDSKANVSTSCPKNQKAVGLRNAAILELLYATGIRVGELTSLNIQDINF 187

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL--CPFDLNLNIQLPLFRGIRGKPLNPG 241
              T+++ GKG+K R+VP      KA+  +         L  +++  +F G RGK ++  
Sbjct: 188 SSHTIKVTGKGNKQRVVPFGVPAYKALSAWISKDGREILLRNSVEEAVFLGTRGKRIDQR 247

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + ++ +    +   +P   + H LRHS ATH+L+ G DLR +Q +LGH  L+TTQ YT+V
Sbjct: 248 LVRQIVHDEAKSAHVP-DISPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTHV 306

Query: 302 NSKNGGDWMMEIYDQTHPSI 321
           + ++    +   Y Q  P  
Sbjct: 307 SIES----LKRKYSQAFPRA 322


>gi|242373543|ref|ZP_04819117.1| tyrosine recombinase XerC [Staphylococcus epidermidis M23864:W1]
 gi|242348906|gb|EES40508.1| tyrosine recombinase XerC [Staphylococcus epidermidis M23864:W1]
          Length = 286

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 79/300 (26%), Positives = 149/300 (49%), Gaps = 16/300 (5%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
            L++ER  S+ TL+SY  D  QF  FL     E      +    Y + R ++S   +  +
Sbjct: 1   MLKVERNFSEYTLKSYHDDLVQFNEFLNSEHLE------LTTFEYKDARNYLSYLYSNNL 54

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
              ++ R +S +++F +Y   +  +  +  + + + KK   LP+   E++   L      
Sbjct: 55  KRTTVSRKISTLRTFYEYWMTQDESVVNPFVQLVHPKKEQYLPQFFYEEEMEALF----- 109

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
            T  + +    R+  I+ LLY  G+R+SE +++  ++I  +   +++ GKG+K R +P  
Sbjct: 110 RTVEQDRTKGMRDRVIIELLYATGIRVSELVNIKIKDIDMNLPGVKVLGKGNKERFIPFG 169

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              +++I  Y D       ++ +  L   ++G+P+     +  +  + +          H
Sbjct: 170 EFCKQSIERYLDEFQPRKAVDHE-YLIVNMKGEPITERGVRYVLNDVVKRTAGVTDIHPH 228

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++     + ++Y   HP   +
Sbjct: 229 KLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQ----LRKVYLNAHPRAKK 284


>gi|144897317|emb|CAM74181.1| Tyrosine recombinase xerD [Magnetospirillum gryphiswaldense MSR-1]
          Length = 306

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 83/309 (26%), Positives = 141/309 (45%), Gaps = 17/309 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           + ++ +L+ + +ER  +  TL +Y  D      +L       ++ +        ++  ++
Sbjct: 5   RHKEAFLEMMAVERAAAINTLDAYRRDLDDLDNYLTKRGGAPLSAR------PADLAGYM 58

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                  +  R+  R LS ++ F  ++       +     +   +   SLP+ L+EKQ  
Sbjct: 59  RALADAGMATRTQARRLSCLRQFYGFVFAEGWRADDPTSRLDAPRLGRSLPKYLSEKQVG 118

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+D                 +A+L LLY  GLR+SE + L    +  D + L ++GKGD
Sbjct: 119 DLLD----AARALESPQGEMMTALLELLYATGLRVSELVGLPYSAVARDPALLVVRGKGD 174

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRY 253
           K R+VPL    R A+  +  L    L        LF G  +   L    F R + ++   
Sbjct: 175 KERMVPLSDPARAALRVWLPLRQDLLGKKKTSRWLFPGSGKTGHLTRAGFARALLRVGMK 234

Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+ P   + H LRH+FATHLL++G DLR +Q +LGH  ++TT+IYT+V  +        
Sbjct: 235 AGIDPRRLSPHVLRHAFATHLLAHGADLRVVQELLGHADIATTEIYTHVLEEPKV----R 290

Query: 313 IYDQTHPSI 321
           + +Q HP  
Sbjct: 291 LVNQHHPLA 299


>gi|294791010|ref|ZP_06756168.1| putative tyrosine recombinase XerC [Scardovia inopinata F0304]
 gi|294458907|gb|EFG27260.1| putative tyrosine recombinase XerC [Scardovia inopinata F0304]
          Length = 322

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 90/332 (27%), Positives = 152/332 (45%), Gaps = 37/332 (11%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E LK  +++L      +GLS+ T  +Y  D  Q L FL+        + +I +++   +R
Sbjct: 5   EKLKAYEDFL---AENQGLSQHTRTAYRGDVDQCLHFLSLR-----GVDSIEKVNTDLLR 56

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            +++   ++++   SL R +  ++ F  Y     ++      ++   +   +LP  L +K
Sbjct: 57  MWMAY-ESRRLAKSSLARKIVAVRGFFAYTYVHGLSHSDPAADLGTPRLPQTLPSVLTKK 115

Query: 133 QALTLVD------NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           QA  L+D                  ID RN AI+ LLY  G+R++E + L   +I     
Sbjct: 116 QASALMDKAEEVYQTDRKEQSGRTAIDLRNDAIVELLYATGIRVAELVGLNTGDIDFSSR 175

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-----------------NLNIQLPL 229
           T+++ GKG+K R+VP       A+ E+ +     L                 +      +
Sbjct: 176 TVKVTGKGNKQRVVPFGAPASHALQEWLNRGRPSLVRKNSADGSSAGSKKNEDRQDSEAV 235

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F G RG  +N    ++ + +L    G+P   + H+LRHS ATHLL  G DLR +Q +LGH
Sbjct: 236 FVGSRGGRINQRQVRQVVHRLAAEAGVP-DISPHSLRHSAATHLLDGGADLREVQEMLGH 294

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
             L+TTQ YT+V+ +     +   Y Q  P  
Sbjct: 295 SSLATTQRYTHVSMEQ----LTRKYQQAFPRA 322


>gi|29348151|ref|NP_811654.1| integrase, site-specific recombinase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253569574|ref|ZP_04846984.1| integrase [Bacteroides sp. 1_1_6]
 gi|29340054|gb|AAO77848.1| integrase, site-specific recombinase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251841593|gb|EES69674.1| integrase [Bacteroides sp. 1_1_6]
          Length = 293

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 75/304 (24%), Positives = 143/304 (47%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L  L  ER  S+ T+ +Y  D +Q   F     +E+       ++    IR +I  
Sbjct: 3   IKSFLDYLRYERNYSEKTVLAYGEDIKQLQEF----AQEEYGKFDPLEVEGELIREWIVS 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S+ R LS ++SF KYL ++   T   +  +   K    LP  L E +   L
Sbjct: 59  LMDRGYTSTSVNRKLSSLRSFYKYLLRQGEVTVDPLRKITGPKNKKPLPAFLKESEMDKL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D     T     +   R+  I+ + Y  G+R+SE + L  +++    S L++ GK +K 
Sbjct: 119 LD----DTDFGEGFKGCRDRLIIGVFYATGIRLSELIGLDDKDVDFSASLLKVTGKRNKQ 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R++P    +++ +LEY ++    +    +   F    G+ L   +    +++    +   
Sbjct: 175 RLIPFGDELKELMLEYINVRNETIPERSE-AFFVKEDGERLYKNLVYNLVKRNLSKVATL 233

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FAT +L+N  +L +++ +LGH  ++TT+IYT+   +     + ++Y Q 
Sbjct: 234 KKRSPHVLRHTFATTMLNNDAELGAVKELLGHESVATTEIYTHATFEE----LKKVYKQA 289

Query: 318 HPSI 321
           HP  
Sbjct: 290 HPRA 293


>gi|227510442|ref|ZP_03940491.1| site-specific recombinase XerD [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227190094|gb|EEI70161.1| site-specific recombinase XerD [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 331

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 87/312 (27%), Positives = 151/312 (48%), Gaps = 16/312 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L  ER  S+ T+Q+Y+ D  +FL FL   +++  ++  I  L   ++ ++++    
Sbjct: 31  FLKYLRSERHYSEDTVQAYQNDLTEFLKFLNETSKDHTSLIKIDSL---DVESYLTGLYD 87

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +K    S+ + +S ++SF  +L K ++   +    +    ++  LPR     +   L   
Sbjct: 88  KKYARNSIAQKVSALRSFYSFLIKNEVIKNNPFEYVHLKNQNRRLPRFFYPTEMQALFS- 146

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                    + +  RNSAIL + Y  G+R+SE +++  ++I  +   + + GKG K R +
Sbjct: 147 ---AAKKGERKLAFRNSAILEVFYSTGIRVSEGVTIQLKDIDLENQLILVTGKGRKQRYL 203

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           P     ++A+  Y       L          LF    GKPL     +  +  + +   L 
Sbjct: 204 PFGKPAKQAVENYLKESREPLMTKYHQKHDYLFINHFGKPLTSRGIEYILDGIIKQSSLT 263

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            +   H LRH+FAT +L+NG D+RS+Q +LGH  LSTTQIYT+V   +    +M  Y + 
Sbjct: 264 TNIHPHMLRHTFATEMLNNGADMRSVQELLGHSSLSTTQIYTHVTKSH----LMNDYQKY 319

Query: 318 HPSITQ--KDKK 327
            P   Q  K KK
Sbjct: 320 FPRNNQSLKPKK 331


>gi|261856623|ref|YP_003263906.1| tyrosine recombinase XerD [Halothiobacillus neapolitanus c2]
 gi|261837092|gb|ACX96859.1| tyrosine recombinase XerD [Halothiobacillus neapolitanus c2]
          Length = 311

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 92/306 (30%), Positives = 148/306 (48%), Gaps = 16/306 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +    ++  L +E GLSK T  +Y  D R     LA    ++  ++ + ++S  ++   +
Sbjct: 20  RLIDEFINALWLEEGLSKNTQSAYRSDLR-----LAALDWQRAGLR-LNEVSAEDLPRLL 73

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            +R +     RS+ R  S +K F  +L+++ + T+     +   +   +LP AL+E +  
Sbjct: 74  GERMSSGQSARSIARLRSSLKRFFGWLRQQNLRTDDPTTALAAPRLPRALPYALSENEVE 133

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+          ++ I  R+ A+L LLY  GLR++E + L    I   Q  LRI GKG+
Sbjct: 134 RLL-----AAPDVSEPIGLRDRAMLELLYASGLRVTELIGLQFGQINLVQGVLRITGKGN 188

Query: 196 KIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K R+VP+       +  Y        L       +F   RG  +    F   I+      
Sbjct: 189 KDRLVPIGDEAIVWLSRYLREARSGLLGRRESANVFVTERGDGMTRQAFWYRIKHHALAA 248

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           GL    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V +      +  ++
Sbjct: 249 GLARLPSPHTLRHAFATHLLNHGADLRVLQMLLGHADLSTTQIYTHVATTR----LKALH 304

Query: 315 DQTHPS 320
            Q HP 
Sbjct: 305 AQHHPR 310


>gi|241764927|ref|ZP_04762927.1| integrase family protein [Acidovorax delafieldii 2AN]
 gi|241365489|gb|EER60254.1| integrase family protein [Acidovorax delafieldii 2AN]
          Length = 327

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 88/321 (27%), Positives = 150/321 (46%), Gaps = 28/321 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L++  +E+ L+  TL  Y  D  +   F A           + QL    IR F+++  
Sbjct: 17  RYLEHARVEKRLAARTLTLYALDLDKLARFAAAVQ------VPLLQLGSAHIRRFVAQMH 70

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           +     R +   LSG + F  +  ++ + + + + ++R  +    LP+AL    A+ L +
Sbjct: 71  SGGRSGRGIALILSGWRGFFAWAGRQGLISHNPVQDVRAPRAPKPLPKALGVDDAVRLAE 130

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT-----------PQNIMDDQSTL 188
                      W++AR++A++ LLYGCGLR+ E + L               +  +    
Sbjct: 131 YDHSGA---DPWLEARDAAMVELLYGCGLRVGELVGLDAAPHADSRRQGRGWVDLEAGEA 187

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPF----DLNLNIQLPLFRGIRGKPLNPGVFQ 244
            + GKG K R VP+  +   A+  +  L       D +  +   LF G RG  L      
Sbjct: 188 HVFGKGSKRRSVPVGAAAMAALRAWLALRAAPFGGDASPRLDAALFVGRRGVRLTAQSIW 247

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +RQ  +  GL      H LRHSFA+HLL + GDLR++Q +LGH  ++TTQ+YT ++ +
Sbjct: 248 LRLRQRSQQAGLTTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTRLDFQ 307

Query: 305 NGGDWMMEIYDQTHPSITQKD 325
           +    + ++YD  HP   +K 
Sbjct: 308 H----LAKVYDAAHPRARRKP 324


>gi|237718760|ref|ZP_04549241.1| integrase [Bacteroides sp. 2_2_4]
 gi|260175400|ref|ZP_05761812.1| integrase, site-specific recombinase [Bacteroides sp. D2]
 gi|299144639|ref|ZP_07037707.1| tyrosine recombinase XerC [Bacteroides sp. 3_1_23]
 gi|315923630|ref|ZP_07919870.1| integrase [Bacteroides sp. D2]
 gi|229451892|gb|EEO57683.1| integrase [Bacteroides sp. 2_2_4]
 gi|298515130|gb|EFI39011.1| tyrosine recombinase XerC [Bacteroides sp. 3_1_23]
 gi|313697505|gb|EFS34340.1| integrase [Bacteroides sp. D2]
          Length = 293

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 75/304 (24%), Positives = 146/304 (48%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L  L+ ER  S+ T+ +Y  D +Q   F     +E+       ++    IR +I  
Sbjct: 3   IESFLDYLQYERNYSEKTVLAYGEDIKQLQEF----AQEEYGKFNPLEVEAELIREWIVS 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S+ R LS +++F KYL ++  TT   +  ++  K    LP  L E +   L
Sbjct: 59  LMDKGYTSTSVNRKLSSLRTFYKYLIRQGKTTIDPLRKIKGPKNKKPLPVFLKENEMNRL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D     T     +   R+  ++ + Y  G+R+SE + L  +++    S L++ GK +K 
Sbjct: 119 LD----DTDFGEGFKGCRDRLVIEVFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQ 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R++P    +R+ +LEY ++    +    +   F    G+ L   +    +++    +   
Sbjct: 175 RLIPFGDELRELMLEYINVRNETIPERSE-AFFIRENGERLYKNLVYNLVKRNLSKVATL 233

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FAT +L+N  +L +++ +LGH  ++TT+IYT+   +     + ++Y Q 
Sbjct: 234 KKRSPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIYTHATFEE----LKKVYKQA 289

Query: 318 HPSI 321
           HP  
Sbjct: 290 HPRA 293


>gi|298694544|gb|ADI97766.1| Site-specific tyrosine recombinase [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 298

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 83/309 (26%), Positives = 150/309 (48%), Gaps = 16/309 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +L  L++ER  S+ TL+SY+ D  QF  FL     +      +    Y + R ++S 
Sbjct: 5   QEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLQ------LNTFEYRDARNYLSY 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             +  +   S+ R +S +++F +Y         +  + + + KK   LP+   E++   L
Sbjct: 59  LYSNHLKRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEAL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                  T  E      R+  +L LLY  G+R+SE +++  Q+I    + + + GKG K 
Sbjct: 119 F-----KTVEEDTSKSLRDRVVLELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R VP     R++I  Y +      + N    L   ++G+ +     +  +  + +     
Sbjct: 174 RFVPFGAYCRQSIENYLEHFKPIQSCNHDF-LIVNMKGEAITERGVRYVLNDIVKRTAGV 232

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++     + ++Y   
Sbjct: 233 SEIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ----LRKVYLNA 288

Query: 318 HPSITQKDK 326
           HP   ++++
Sbjct: 289 HPRAKKENE 297


>gi|296161400|ref|ZP_06844207.1| tyrosine recombinase XerC [Burkholderia sp. Ch1-1]
 gi|295888386|gb|EFG68197.1| tyrosine recombinase XerC [Burkholderia sp. Ch1-1]
          Length = 307

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 86/321 (26%), Positives = 157/321 (48%), Gaps = 29/321 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                +L NLE ER LS  TL+ Y  +  +  +            + +  L+  +IR  +
Sbjct: 5   DPIAAYLSNLEHERRLSAHTLRGYTHELEELKLLAKG--------RPLESLTAVDIRGAV 56

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           S+     +  RS+   LS  ++F ++L  R     + +  +R  K++ +LP+AL+   A 
Sbjct: 57  SRAHAGGLTARSISHRLSAWRAFYRWLAGRVDLPANPVATVRAPKQAKTLPKALSVDDAT 116

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-----------DD 184
            L+++    +         R+ A+L L Y  GLR++E + L  +               D
Sbjct: 117 RLMESPPAASPE-----GLRDHAMLELFYSSGLRLAELVGLDARFADADGYRSAGWLKLD 171

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
            + + + GKG++ R+VP+     +A+  +  +    +  +   PLF   RG  L+P V +
Sbjct: 172 SAEVEVLGKGNRRRVVPVGSKALEALGAWLAVRDQMVKHDPH-PLFLSARGNRLSPNVVR 230

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  ++ TQ+YT ++ +
Sbjct: 231 ERVKRAALVAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTALDFQ 290

Query: 305 NGGDWMMEIYDQTHPSITQKD 325
           +    +  +YDQ HP   ++D
Sbjct: 291 H----LAHVYDQAHPRAKKRD 307


>gi|197104212|ref|YP_002129589.1| probable integrase/recombinase DNA recombination protein
           [Phenylobacterium zucineum HLK1]
 gi|196477632|gb|ACG77160.1| probable integrase/recombinase DNA recombination protein
           [Phenylobacterium zucineum HLK1]
          Length = 305

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 83/309 (26%), Positives = 142/309 (45%), Gaps = 17/309 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ + +ER  ++ TL +Y  D      FLA         + +   +  ++ A+ +  
Sbjct: 10  EAFLEMMAVERAAARNTLSAYGRDLADAAGFLAGLG------RDLSDATAEDVEAYFADL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   +  R  + ++ F +++       +     +   KK  SLP+ L+ ++   L+
Sbjct: 64  GARGLSAATAARRRAAVRQFYRFVLGEGWRGDDPSRRVEAPKKGRSLPKVLSREEMDRLI 123

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                  + +      R + ++ L Y  GLRISE   LT   +  D + L ++GKG K R
Sbjct: 124 ---AAAGARDGASHALRLACMVELAYASGLRISELTGLTLAALARDPAYLIVKGKGGKER 180

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGI-RGKPLNPGVFQRYIRQLRRYLG 255
           + PL    R A+  Y ++ P  L         LF    +G  L P  F + + +     G
Sbjct: 181 LAPLNEPARAAVKAYLEVRPAFLPKGDTANPWLFPSRGKGGRLTPRRFAQLLDEAAADAG 240

Query: 256 L-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           + P   + H LRH+FATHLL  G DLR +Q +LGH  ++TTQIYT+V S    D + E+ 
Sbjct: 241 IDPGRVSPHVLRHAFATHLLEGGADLRVVQKLLGHADIATTQIYTHVAS----DRLSEVV 296

Query: 315 DQTHPSITQ 323
              HP   +
Sbjct: 297 RSKHPLAKK 305


>gi|124268427|ref|YP_001022431.1| tyrosine recombinase XerC subunit [Methylibium petroleiphilum PM1]
 gi|124261202|gb|ABM96196.1| tyrosine recombinase XerC subunit [Methylibium petroleiphilum PM1]
          Length = 335

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 82/310 (26%), Positives = 147/310 (47%), Gaps = 21/310 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           LQ+L +ER LS  TL +YE   R+                 +R +    +R ++++    
Sbjct: 39  LQHLRVERRLSAKTLLNYEEAFRRLGEAAQR------DGVALRAVQPHHVRHWMARLHAG 92

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +  RS+  +LS  +   ++L        + +  +R  + +  LP+AL+   A+ L D+ 
Sbjct: 93  GLAPRSIAIALSAWRGLYRWLGHEGRVALNPVEGLRAPRAAKPLPKALSVDHAVALADH- 151

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP-------QNIMDDQSTLRIQGKG 194
                     ++AR+  ++ LLYGCGLR++E + L           I    +   + GKG
Sbjct: 152 --RQVDGDARLEARDRCLVELLYGCGLRVAELVDLDVTPGGGALGWIDRADAEAHVLGKG 209

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K R VP+  +   A+ ++         ++ +  LF    G+ L     +  +++     
Sbjct: 210 SKRRSVPVGRAALAALDDWLAQRGSVAQVD-EPALFVSRHGRRLTASQVRTRLKERAIQA 268

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           GLP     H LRHS+A+HLL + GDLR++Q +LGH  ++TTQ+YT ++ ++    + + Y
Sbjct: 269 GLPTHVHPHMLRHSYASHLLQSSGDLRAVQELLGHANITTTQVYTKLDFQH----LAKAY 324

Query: 315 DQTHPSITQK 324
           D  HP   +K
Sbjct: 325 DAAHPRARKK 334


>gi|296284090|ref|ZP_06862088.1| phage integrase [Citromicrobium bathyomarinum JL354]
          Length = 299

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 111/308 (36%), Positives = 171/308 (55%), Gaps = 14/308 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            W  +L  ER LS  T+++Y     + L             Q + +L    +RA +++RR
Sbjct: 4   RWESHLATERRLSPHTVRAYIRAAERLLE-----ETPATDWQGVARLGAPALRAQLARRR 58

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              + +RS  R LS +++FL + +      ++    +R  +   +LPR +   +AL L  
Sbjct: 59  ADGLSNRSAARELSALRAFLAFARAEAGFDDAQAPRLRGPRIKRTLPRPVTPDEALHL-- 116

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              +      +W   R+ A+L LLYG G+R+ EALSLT ++    + T+R+ GKG K R+
Sbjct: 117 AERIGEERREEWTGLRDRAVLLLLYGAGMRLGEALSLTGEHAQIGE-TIRVTGKGGKTRV 175

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
            P+LP++R AI  Y   CP DL  +   PLFRG RG PL+PG+ Q+ + Q+R  +GLP +
Sbjct: 176 APILPAIRSAIAAYVAACPHDLAPDK--PLFRGQRGGPLSPGLVQKAMAQVRGEIGLPAN 233

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T H LRHSFATHLL  G DLRS+Q +LGH  L +TQIYT V++ +    +++ Y   HP
Sbjct: 234 ATPHALRHSFATHLLGAGADLRSLQELLGHASLGSTQIYTEVDAAS----LLDTYRNAHP 289

Query: 320 SITQKDKK 327
              +  ++
Sbjct: 290 REKKAPER 297


>gi|84686929|ref|ZP_01014813.1| tyrosine recombinase XerD [Maritimibacter alkaliphilus HTCC2654]
 gi|84665126|gb|EAQ11606.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2654]
          Length = 315

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 86/312 (27%), Positives = 141/312 (45%), Gaps = 20/312 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+    E   S+ TL +Y  D + F  +L    E               + A++    
Sbjct: 12  AFLEAQAAELDASQNTLLAYGRDLKDFSGYLDRMGE------DFGGADRATVEAYLIDCE 65

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q +   +  R LS IK   ++  +    T++  L +    K+  LP+ L+E     L++
Sbjct: 66  AQGLAVSTRARRLSAIKQIYRFAFEEGWRTDNPTLRITGPGKARRLPKTLSEDDVERLLN 125

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
               H   +   +  RN+ ++ +LY  G+R+SE ++L       D   L + GKG K R+
Sbjct: 126 AARQHGRTDADRL--RNACMMEVLYATGMRVSELVTLPVSAARGDPRMLLVMGKGGKERM 183

Query: 200 VPLLPSVRKAILEYYDLCP------FDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRR 252
           VPL P  R A+  + D+                  LF    +   L    F   I+ +  
Sbjct: 184 VPLSPPARAALAAWLDVRDAAEDAARSKGAKPSRFLFPSTGKDGHLTRHRFHGLIKDIAV 243

Query: 253 YLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             G+ P + T H LRH+FATHLL++G DLR+IQ++LGH  +STT+IYT+V  +     + 
Sbjct: 244 AAGVSPETVTPHRLRHAFATHLLAHGADLRAIQTLLGHADVSTTEIYTHVLDER----LK 299

Query: 312 EIYDQTHPSITQ 323
           E+    HP   +
Sbjct: 300 ELVLSHHPLAKK 311


>gi|83955532|ref|ZP_00964163.1| tyrosine recombinase XerD [Sulfitobacter sp. NAS-14.1]
 gi|83840176|gb|EAP79351.1| tyrosine recombinase XerD [Sulfitobacter sp. NAS-14.1]
          Length = 324

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 91/321 (28%), Positives = 145/321 (45%), Gaps = 20/321 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +  ELL     +L+    E G +  T  +Y  D + F  FLA    + +T      +   
Sbjct: 1   MQTELLHWISTFLEAQAAELGAATNTQLAYGRDLKDFDSFLARRALDFVT------VGRK 54

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +I A++     Q +   +  R LS IK   ++  +    T++  + +    +   LP+ L
Sbjct: 55  DIEAYLVWCDAQGLAKSTRARRLSAIKQLYRFAFEEGWRTDNPAIQIAGPGQDKRLPKVL 114

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +E +   L+D       + +  +  RN+ ++ LLY  G+R+SE +SL       D   L 
Sbjct: 115 SEDEVDQLLDAARHSGRNTSDQL--RNTCLMELLYATGMRVSELVSLRVNAARGDPRLLL 172

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCP------FDLNLNIQLPLFRGI-RGKPLNPGV 242
           I GKG K R+VPL    R+A+  +                   + LF        L    
Sbjct: 173 IMGKGGKERLVPLSDPSREALAAWLVQRDNTDEAAQAKGKPASIYLFPSRGSAGYLTRHR 232

Query: 243 FQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           F   I++     G+ P   T HTLRH+FATHLL+NG DLR+IQ++LGH  ++TT+IYT+V
Sbjct: 233 FYLLIKEFALTAGVDPSKVTPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEIYTHV 292

Query: 302 NSKNGGDWMMEIYDQTHPSIT 322
                   + E+    HP   
Sbjct: 293 LEAR----LSELVLDNHPLAK 309


>gi|332283336|ref|YP_004415247.1| site-specific tyrosine recombinase XerD [Pusillimonas sp. T7-7]
 gi|330427289|gb|AEC18623.1| site-specific tyrosine recombinase XerD [Pusillimonas sp. T7-7]
          Length = 282

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 79/297 (26%), Positives = 139/297 (46%), Gaps = 17/297 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +E GL++ TL +Y  D   F ++L          +T+ Q    +I+ + + +        
Sbjct: 1   MEDGLAQNTLSAYRRDLSAFALWLHAKPG-----KTLEQADAADIQDWFAAKHAST-KAT 54

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           +  R L+ +K +  +  ++ +  +   L +R  K++   P+ ++E Q   L+        
Sbjct: 55  TANRRLAALKRYYLWAMRQGLVAKDPCLTLRAAKQAARFPKTMSEDQVDALL-----QAP 109

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205
            +   +  R+ A+L  LY  GLR+SE ++L   ++   +  +R+ QGKG K R+VPL   
Sbjct: 110 DDNSPLGLRDRAMLETLYATGLRVSELINLELLDVSLTEGVVRVTQGKGGKDRLVPLGDE 169

Query: 206 VRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
               I  Y     P  L       LF   R   +    F   +++      +    + H 
Sbjct: 170 ALHWIDLYAKQSRPGLLGQRRCNALFVTARAAAMTRQSFWLIVKKYAALADIHTPLSPHV 229

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++ + HP  
Sbjct: 230 LRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARER----LKTMHAKHHPRA 282


>gi|28378506|ref|NP_785398.1| integrase/recombinase [Lactobacillus plantarum WCFS1]
 gi|254556720|ref|YP_003063137.1| integrase/recombinase [Lactobacillus plantarum JDM1]
 gi|300767452|ref|ZP_07077364.1| tyrosine recombinase XerC [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308180663|ref|YP_003924791.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28271342|emb|CAD64247.1| integrase/recombinase [Lactobacillus plantarum WCFS1]
 gi|254045647|gb|ACT62440.1| integrase/recombinase [Lactobacillus plantarum JDM1]
 gi|300495271|gb|EFK30427.1| tyrosine recombinase XerC [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308046154|gb|ADN98697.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 314

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 87/311 (27%), Positives = 150/311 (48%), Gaps = 15/311 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ + +ER  S+ T  +Y  D + F  FL          +   ++   ++  ++S    
Sbjct: 9   FLKYIRVERQYSEETAAAYREDIQAFNDFLTANG----GAKAYTEVDRLDVNVYLSHLYD 64

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   S+ R +S ++SF  +L K  +   +  + ++  K +  LPR   +K+   L   
Sbjct: 65  RHLTRNSIARKVSSLRSFYNFLVKNDLAKLNPFVYVQLKKHAARLPRFFYQKELDVLFQT 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           V      +   + ARN+A+L +LYG G+R+SE + L   ++  D   + I+GKGDK R V
Sbjct: 125 VYA----DDSVMGARNAALLEVLYGTGIRLSECVDLQLADVDYDLKMMLIRGKGDKERYV 180

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNI---QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           P       A+  Y  +C   +          +F    G P+  G  +  + Q+ +   L 
Sbjct: 181 PFGRYAATALQHYETVCRQPVMAKYGQTHQTVFINRHGGPITGGGIEYVLNQIVKKSSLT 240

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRH+FAT +L+NG DLR++Q +LGH  LSTTQIY +V  ++    + + Y Q 
Sbjct: 241 ADIHPHMLRHTFATQMLNNGADLRTVQELLGHTSLSTTQIYAHVTKEH----LQQDYRQF 296

Query: 318 HPSITQKDKKN 328
            P  T++  K 
Sbjct: 297 FPRATRESTKE 307


>gi|93004888|ref|YP_579325.1| tyrosine recombinase XerD [Psychrobacter cryohalolentis K5]
 gi|92392566|gb|ABE73841.1| Tyrosine recombinase XerD [Psychrobacter cryohalolentis K5]
          Length = 312

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 82/318 (25%), Positives = 146/318 (45%), Gaps = 22/318 (6%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P+ ++ +         +   + RGL+  T  +Y  D R           E      + + 
Sbjct: 12  PKALAVDDEPAYITEFRQAMLARGLATRTRNAYVRDLRSC---------ELTNHTALTRW 62

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
              ++   +S         R+  R LS ++ F  ++    +  ++    +++ K    LP
Sbjct: 63  QPEDVLHCLSILTQDGKTPRTQARMLSSLRQFYLWMIASNLREDNPCERIKSPKLGRPLP 122

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L E        + LL     +  +  R+ A+L +LY CGLR+SE ++L+ + +  +  
Sbjct: 123 KDLAEADV-----DNLLAAPDSSTALGLRDKAMLEVLYACGLRVSELVNLSLEQVNLNSG 177

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNPGV 242
            L+I GKG+K R+VPL      A+ +Y      DL           +F   +G  +    
Sbjct: 178 WLQITGKGNKTRLVPLGEYAADALEDYLTHGRGDLIAHLKAGNCQAVFLTAQGGYMTRQN 237

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           F   +++  +   +    + HTLRH+FATHLL++G DLRS+Q +LGH  LSTTQIYT+V 
Sbjct: 238 FWYLLKKYAKVASIDKDLSPHTLRHAFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHVA 297

Query: 303 SKNGGDWMMEIYDQTHPS 320
           +      + +++ + HP 
Sbjct: 298 TAR----LQKLHAEHHPR 311


>gi|225630477|ref|YP_002727268.1| site-specific recombinase, phage integrase family [Wolbachia sp.
           wRi]
 gi|225592458|gb|ACN95477.1| site-specific recombinase, phage integrase family [Wolbachia sp.
           wRi]
          Length = 306

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 113/314 (35%), Positives = 173/314 (55%), Gaps = 10/314 (3%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L    + W + L   R  S  TL+SY  D +  + FL  +   ++ + T++ LS  E+R
Sbjct: 2   DLGSIIEKWYEWLRCNRSYSPNTLESYMRDLKDLISFLNTHIGGEVNVGTLKNLSIPELR 61

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           ++++ R  + +  RS  R+LS I++F KY+K         + ++    +  +LP+AL+  
Sbjct: 62  SWLTSRYARGVNARSNTRALSVIRNFFKYIKNNHNIDNEAVFSLSRPIQRRTLPKALSIP 121

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
              TL+  + L    E  W+  R  AI+ LLYG GLRISEAL+L   +I ++  +L + G
Sbjct: 122 NIKTLLKEMKLSDLGE-PWVVKREIAIIVLLYGTGLRISEALNLRVSDINNE--SLIVTG 178

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KGDK R V +LP V+K I EY   CP+   L+    LF G+RGK L        ++++RR
Sbjct: 179 KGDKQRQVFILPVVKKCIQEYIKACPY---LDEAQHLFVGVRGKKLGRTYVANRLQKIRR 235

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            L LP   + H  RHSFATHLL    D+RSIQ +LGH  L TTQIYT++N ++  +    
Sbjct: 236 MLNLPEILSPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQIYTHLNYQDVFN---- 291

Query: 313 IYDQTHPSITQKDK 326
           +Y      + +K K
Sbjct: 292 MYKNFQQGLEKKSK 305


>gi|296269467|ref|YP_003652099.1| tyrosine recombinase XerD [Thermobispora bispora DSM 43833]
 gi|296092254|gb|ADG88206.1| tyrosine recombinase XerD [Thermobispora bispora DSM 43833]
          Length = 313

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 91/316 (28%), Positives = 148/316 (46%), Gaps = 27/316 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L +L +ERGLS  T+ SY  D R++L  L         ++T+ ++   ++ AF++  R
Sbjct: 11  SYLNHLAVERGLSANTVASYRRDLRRYLDHLKAR-----GLRTLAEVREDDVAAFLTALR 65

Query: 80  TQKIGDRSL-----KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
                  +L      R+ S ++   ++  +  +T       +R  ++   LP+A++ ++ 
Sbjct: 66  EGDADHPALVASSAARAFSAVRGLHRFALREGLTRHDPAHAIRPPRQLRRLPKAISVEEV 125

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN------IMDDQSTL 188
             L+         +   +  RN A+L LLYG G RISEA+ L   +          +  +
Sbjct: 126 ERLI----AACGPDGSPLTLRNRALLELLYGTGARISEAVGLAVDDVTTGAPTDPARDQV 181

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRY 246
           R++GKG + RIVPL    R+A+  Y       L    +    LF   RG  L        
Sbjct: 182 RLRGKGGRTRIVPLGRYARQALDAYLVRARPQLAAQGRGTSALFLNARGGRLTRQGAWEV 241

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           ++      GL    + H LRHSFATHLL  G D+R +Q +LGH  ++TTQ+YT V     
Sbjct: 242 LQAAAERAGLS-GVSPHMLRHSFATHLLDGGADVRVVQELLGHASVATTQVYTLVT---- 296

Query: 307 GDWMMEIYDQTHPSIT 322
            D + E+Y   HP   
Sbjct: 297 VDRLREVYAAAHPRAR 312


>gi|170017324|ref|YP_001728243.1| site-specific recombinase XerD [Leuconostoc citreum KM20]
 gi|169804181|gb|ACA82799.1| Site-specific recombinase XerD [Leuconostoc citreum KM20]
          Length = 304

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 147/309 (47%), Gaps = 14/309 (4%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E + +   L+ ER  S LTL++Y  D  +F+ FL    E     QT + +   ++R +++
Sbjct: 8   EEKLYRDYLQSERQYSALTLKAYLSDIDEFVAFL----ERNGGFQTFKTVQTLDVRVYLN 63

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               + +   S+ R +S ++ F ++L      T++   N+   K  N LP    E +   
Sbjct: 64  DLYERHLARTSIARKISSLRMFYQFLIANHFATDNPFENVALRKHQNHLPEFFYETEMQV 123

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L +        +   +  RN+A+L  LY  G R++E  +LT   I   Q  + I GKG+K
Sbjct: 124 LFEI----AYDQKDPLWQRNAALLECLYATGARVAEIATLTLSQIDFQQRLILIHGKGNK 179

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLN--IQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            R VP     +KA+ +Y      +L  N      +F   RG+P+        +  L    
Sbjct: 180 DRYVPFGHYAQKAMQQYIAQLRPELVANCPENTVVFVNHRGQPITAAGITYILNTLMNRS 239

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            L      H LRH+FATHLL+NG D+R++Q +LGH  LSTTQ+YT+V  ++    + + Y
Sbjct: 240 TLTGKIHPHMLRHTFATHLLNNGADMRTVQELLGHVNLSTTQMYTHVTRES----LQKNY 295

Query: 315 DQTHPSITQ 323
               P   +
Sbjct: 296 QSFFPRAKK 304


>gi|169827113|ref|YP_001697271.1| tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41]
 gi|168991601|gb|ACA39141.1| Tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41]
          Length = 299

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 91/307 (29%), Positives = 153/307 (49%), Gaps = 15/307 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
              + ++  +++E+  S  T++ YE D   FL FL     ++  I  +  + Y   R ++
Sbjct: 7   DALEQFMLYIQVEKNFSVHTVREYESDLLDFLAFL-----QREGINDLASVEYIHARLYV 61

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +K   +K    S+ R +S I+SF ++L ++    +    ++ + KK + LP    E++ +
Sbjct: 62  TKLYDEKRARASISRKISSIRSFFRFLNRQYGFDDGAFRSLYHPKKESRLPNFFYEEELM 121

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L D      +        RN AIL LLY  G+R+SE  S+  +++    S +R+ GKG 
Sbjct: 122 QLFD-----ANTGDDLKSLRNMAILELLYATGIRVSELTSIQVKDVDFHYSIIRVMGKGR 176

Query: 196 KIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K RI+P       A+L+Y     P  +       LF  +RG  L P   +  + ++    
Sbjct: 177 KERIIPFGQFASLAMLDYIEQARPRLMKKTNHQQLFVNMRGGELTPRGVRHVLNEMIDKA 236

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            L      H LRH+FATHLL+NG DLR++Q +LGH  LS+TQ+YT+V  ++    + + Y
Sbjct: 237 SLHTKIYPHMLRHTFATHLLNNGADLRTVQELLGHSHLSSTQVYTHVTKEH----LRQTY 292

Query: 315 DQTHPSI 321
              HP  
Sbjct: 293 MNAHPRA 299


>gi|189502574|ref|YP_001958291.1| hypothetical protein Aasi_1239 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189498015|gb|ACE06562.1| hypothetical protein Aasi_1239 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 299

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 84/306 (27%), Positives = 146/306 (47%), Gaps = 15/306 (4%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             Q +  +L++ER L++ ++ +Y  D R+   F+      ++ +  +  L  T +R F+ 
Sbjct: 6   AIQQFEIHLQLERSLAENSILAYGSDLRKLCQFIEL---RQLGLSPLT-LQTTHLRDFLM 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                 IG  S  R LS I+ F ++L             +        LP  L+  +   
Sbjct: 62  YLYELGIGATSQARILSAIRGFYQFLLLEGYLETDPTKLVERPVLGRKLPHTLSVHEIE- 120

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
               +L  T   +  +  RN A+L  LY  GLR+SE +SL   +I  ++  L++ GKG+K
Sbjct: 121 ----ILFGTIDHSTAMGMRNRAMLETLYSSGLRVSELISLRMSDIYFEEMFLQVLGKGNK 176

Query: 197 IRIVPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            R+VP+     K +  Y +     F +       +F   RG  ++  +    I++L    
Sbjct: 177 QRLVPIGKIALKYLRIYIEEVRIHFPIKKEAANCVFLNKRGSKMSRVMVFLIIKELASKA 236

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           GL    + HT RHSFATHL+  G DLR++Q++LGH  ++TT+IYT+++      ++ +  
Sbjct: 237 GLQQEISPHTFRHSFATHLVEGGADLRAVQAMLGHESITTTEIYTHLD----RSYLQQTI 292

Query: 315 DQTHPS 320
            + HP 
Sbjct: 293 HEFHPR 298


>gi|71064633|ref|YP_263360.1| phage integrase [Psychrobacter arcticus 273-4]
 gi|71037618|gb|AAZ17926.1| probable phage integrase [Psychrobacter arcticus 273-4]
          Length = 312

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 82/318 (25%), Positives = 147/318 (46%), Gaps = 22/318 (6%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P+ ++ +         +   + RGL+  T  +Y  D R           E      + + 
Sbjct: 12  PKALAVDDEPAYMTEFRQAMLARGLATRTRNAYVRDLRSC---------ELTNHAALTRW 62

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
              ++   +S         R+  R LS ++ F  ++    +  ++    +++ K    LP
Sbjct: 63  QPEDVLCCLSILTQDGKTPRTQARMLSSLRQFYLWMIASNLREDNPCERIKSPKLGRPLP 122

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L E        + LL     +  +  R+ A+L +LY CGLR+SE ++L+ + +  +  
Sbjct: 123 KDLAEADV-----DNLLAAPDSSTALGLRDKAMLEVLYACGLRVSELVNLSLEQVNLNSG 177

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNPGV 242
            L+I GKG+K R+VPL      A+ +Y      DL           +F   +G  +    
Sbjct: 178 WLQITGKGNKTRLVPLGEYASDALEDYLTHGRGDLIAHLKAGNCQAVFLTAQGGYMTRQN 237

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           F   +++  +   +  + + HTLRH+FATHLL++G DLRS+Q +LGH  LSTTQIYT+V 
Sbjct: 238 FWYLLKKYAKVASIDKALSPHTLRHAFATHLLNHGADLRSVQLLLGHSNLSTTQIYTHVA 297

Query: 303 SKNGGDWMMEIYDQTHPS 320
           +      + +++ + HP 
Sbjct: 298 TAR----LQKLHAEHHPR 311


>gi|126654062|ref|ZP_01725888.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905]
 gi|126589442|gb|EAZ83589.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905]
          Length = 299

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 91/307 (29%), Positives = 152/307 (49%), Gaps = 15/307 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
              + ++  +++E+  S  T++ YE D   FL FL     +   I  +  + Y   R ++
Sbjct: 7   DALEQFMLYIQVEKNFSVHTVREYESDLLDFLAFL-----QGEGIHDLASVEYIHARLYV 61

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +K   +K    S+ R +S I+SF ++L ++    +    ++ + KK + LP    E++ +
Sbjct: 62  TKLYDEKRARASISRKISSIRSFFRFLNRQYGFDDGAFRSLYHPKKESRLPNFFYEEELM 121

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L D      +        RN AIL LLY  G+R+SE  S+  +++    S +R+ GKG 
Sbjct: 122 QLFD-----ANTGDDLKSLRNMAILELLYATGIRVSELTSIQVKDVDFHYSIIRVMGKGR 176

Query: 196 KIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K RI+P       A+L+Y     P  +       LF  +RG  L P   +  + ++    
Sbjct: 177 KERIIPFGQFASLAMLDYIEQARPRLMKKTNHQQLFVNMRGGELTPRGVRHVLNEMIDKA 236

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            L      H LRH+FATHLL+NG DLR++Q +LGH  LS+TQ+YT+V  ++    + + Y
Sbjct: 237 SLHTKIYPHMLRHTFATHLLNNGADLRTVQELLGHSHLSSTQVYTHVTKEH----LRQTY 292

Query: 315 DQTHPSI 321
              HP  
Sbjct: 293 MNAHPRA 299


>gi|298373800|ref|ZP_06983789.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274852|gb|EFI16404.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058]
          Length = 307

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 87/308 (28%), Positives = 146/308 (47%), Gaps = 13/308 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            N+   L +E+ +S+ T+ +Y  D      +L     + I I   RQ + T ++  I + 
Sbjct: 10  DNYRVFLTMEKSMSENTVVAYIRDLHTLSEYL-----DGIGI-DYRQATLTNLKNLIVEL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               I  RS  R +SGIKSF ++    ++        +   +    LP  L+ ++   ++
Sbjct: 64  TDLGISGRSRARMISGIKSFYRFCIIDRLLEADPTEQLEQPQLPLYLPDVLSVEEIDRII 123

Query: 139 DNVLLHTSHETKW--IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
             + L    +     I  RN AI+ +LYG G+R+SE +     +I  D+  ++I GKG+K
Sbjct: 124 VTIDLSEVDKYTKLNIGHRNLAIVEVLYGSGVRVSELVYAKISDINFDEKFIKILGKGNK 183

Query: 197 IRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R+VPL     +AI  +             +  +F   RG  +   +    I+ +    G
Sbjct: 184 ERLVPLSDPAIRAINNWFLARRVLTPKPKHEDYIFLNRRGARMTRQMVFLAIKNMVEKAG 243

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + + HT RHSFATHLL NG +LR+IQ +LGH  ++TT+IYT+V    G   + +   
Sbjct: 244 ITKTVSPHTFRHSFATHLLENGANLRAIQQLLGHASITTTEIYTHV----GISHLRQEIM 299

Query: 316 QTHPSITQ 323
             HP   +
Sbjct: 300 NFHPRNKK 307


>gi|34222908|sp|Q8NNZ9|XERC_CORGL RecName: Full=Tyrosine recombinase xerC
 gi|21324798|dbj|BAB99421.1| Integrase [Corynebacterium glutamicum ATCC 13032]
          Length = 308

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 88/312 (28%), Positives = 152/312 (48%), Gaps = 21/312 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
              +L     ++ ++L++  G S  T++ Y  D                TI+ I   S  
Sbjct: 18  APSKLHTLIDDFCEHLDLVVGRSAATIRGYRSDLYAMAD----------TIEDIDNFSLP 67

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R ++     +     +L R  + +K+F  + +K           + + K +  LP+ L
Sbjct: 68  TLRQWLGIAVDEGKSRATLARRTASVKAFSSWAQKNGHLKADEAARLISPKITRDLPKIL 127

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            E+QA   V+N     +   +    R+SAIL LLY  G+R++E   +   +I  D+  +R
Sbjct: 128 GEQQAGDFVEN----AASTNEEEFLRDSAILELLYATGMRVAELCGIDLSDIDYDRKMVR 183

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG+K R+VP   S  KA+  + D+   D        LF G+RG+ +N    +R + +
Sbjct: 184 VLGKGNKERVVPFGESAHKALRNWLDVR--DEMTEDPKALFVGVRGQRINARQVRRIVDR 241

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +  G+    + H+LRH+ ATHLL  G DLR +Q +LGH  + TTQIYT+V++K     
Sbjct: 242 AAKVTGVD-HLSPHSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNKR---- 296

Query: 310 MMEIYDQTHPSI 321
           ++E +++ HP  
Sbjct: 297 LLEAFNKAHPRA 308


>gi|73539788|ref|YP_294308.1| site-specific tyrosine recombinase XerC [Ralstonia eutropha JMP134]
 gi|72117201|gb|AAZ59464.1| tyrosine recombinase XerC subunit [Ralstonia eutropha JMP134]
          Length = 339

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 88/322 (27%), Positives = 148/322 (45%), Gaps = 29/322 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q +L  LE  R L+  T+ SY  D        A +         +  L    IRAF ++
Sbjct: 15  VQRYLAWLEGSRKLAGHTISSYRRDLTVLQAHAAKHAPG----IALLALQTRHIRAFAAR 70

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNILNMRNLKKSNSLPRALNEKQALT 136
              + +   S+ R+LS  + F  +  +  +    + +  +R  +  + LP+AL+ + A+ 
Sbjct: 71  MHGEGLAGTSIARTLSAWRGFYLWAAQHGLGVQANPVDGVRAPRSGHRLPKALSVEHAVA 130

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ----------- 185
           LV +        T     R+ A+  L Y  GLR++E + L  +    D            
Sbjct: 131 LVSH-----PAGTDAAALRDQAVWELFYSSGLRLAELVQLDVRYERLDGYESAGWLDLSG 185

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN----IQLPLFRGIRGKPLNPG 241
           + L + GKG + R VP+     +A+  +  +    L           LF G RG  L+  
Sbjct: 186 AELTVTGKGSRRRTVPVGSKAMEALRAWLGVREQLLRPGAAPEDASALFLGARGHRLSMR 245

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           V Q  ++Q     G+P     H LRHSFATH+L + GDLR++Q +LGH  ++TTQIYT++
Sbjct: 246 VVQMRLKQQAIRAGVPADVHPHMLRHSFATHMLQSSGDLRAVQELLGHASIATTQIYTSL 305

Query: 302 NSKNGGDWMMEIYDQTHPSITQ 323
           + ++    + ++YD+ HP   +
Sbjct: 306 DFQH----LAKVYDKAHPRAGR 323


>gi|319401458|gb|EFV89668.1| tyrosine recombinase XerC [Staphylococcus epidermidis FRI909]
          Length = 296

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 80/311 (25%), Positives = 152/311 (48%), Gaps = 18/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + K ++ +L  L++ER  S  TL+SY  D  QF  FL     +      +    Y + R 
Sbjct: 1   MDKIQETFLYMLKVERNFSAYTLKSYHDDLVQFNNFLEREHLQ------LETFEYKDARN 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++   + ++   ++ R +S +++F ++   +  +  +  + + + KK   LP+   E++
Sbjct: 55  YLAFLYSNQLKRTTVSRKISTLRTFYEFWMTQDNSIINPFVQLVHPKKEKYLPQFFYEEE 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L       T         R+  I+ LLY  G+R+SE +++  ++I  +   +++ GK
Sbjct: 115 MEALF-----QTVEHDNKKGIRDKVIIELLYATGIRVSELINIKLKDIDMNLPGVKVLGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R +P     R++I  Y +       L     L   ++G P+     +  +  + + 
Sbjct: 170 GNKERFIPFGEFCRQSIERYLEE-FQPKQLANHDYLIVNMKGDPITERGVRYVLNDVVKR 228

Query: 254 -LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+      H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++     + +
Sbjct: 229 TAGVN-DIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQ----LRK 283

Query: 313 IYDQTHPSITQ 323
           +Y   HP   +
Sbjct: 284 VYLNAHPRAKK 294


>gi|319778432|ref|YP_004129345.1| Tyrosine recombinase XerD [Taylorella equigenitalis MCE9]
 gi|317108456|gb|ADU91202.1| Tyrosine recombinase XerD [Taylorella equigenitalis MCE9]
          Length = 297

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 148/314 (47%), Gaps = 19/314 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S E  +    ++ +L +E GLSK TL SY  D      FL           +I ++   
Sbjct: 1   MSEENKEWIDRFIDSLWLEEGLSKNTLNSYRLDLNSLNNFLKDSI-------SILKIDSD 53

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++  +  +  +      ++ R L+ ++ F  +  K+ +  +   L +   K    LP+++
Sbjct: 54  QLNLWFMEISSSS-KATTINRKLATVRKFYAWCIKQNLILKDPCLGISTRKTPQRLPKSI 112

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +E Q   L+     +          R+ A+L +LY  G+R+SE +++    I  D   +R
Sbjct: 113 SESQVEELL-----NAPDLKTASGLRDKAMLEILYATGMRVSELIAIKTNEISLDAGVVR 167

Query: 190 I-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYI 247
           +  GKG K R+VP+       + +Y       L  + +   +F    G  +    F + I
Sbjct: 168 VTMGKGSKDRLVPMGEESEFYLKKYLSEGRPLLEKDKKNSFVFLNRFGDCMTRQAFWQII 227

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++  +Y  + +  + H LRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +   
Sbjct: 228 KKYAKYTSIKIPLSPHVLRHAFATHLLNHGADLRVVQMLLGHVDISTTQIYTHVARER-- 285

Query: 308 DWMMEIYDQTHPSI 321
             +  ++ + HP  
Sbjct: 286 --LKSLHKKHHPRA 297


>gi|325123125|gb|ADY82648.1| site-specific tyrosine recombinase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 295

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 166/305 (54%), Gaps = 14/305 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+  +I+   S+ T+ +YE D + FL F             +R +  +++R ++++R  
Sbjct: 2   WLKERKIQNQ-SEHTITAYERDVKSFLEFCEHKQ------LDLRNIEASDLREYLAQRVE 54

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           Q ++   S++R L+ I+ F+K+ ++ K    +   + +  ++   LP  ++ +    ++D
Sbjct: 55  QDQLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILD 114

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             +     + + +  R+ A+L LLY  GLR++E   LT +++  ++  +RI GKG+K RI
Sbjct: 115 QPMPEKPVDQQ-LWLRDKAMLELLYSSGLRLAELQGLTVKDVDFNRQLVRITGKGNKTRI 173

Query: 200 VPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP     ++++L +      +  + +    +F  +RG  L P   ++ ++   +  G+ +
Sbjct: 174 VPFGKKAKESLLNWLKVYKIWKGHFDQNDSVFISLRGGALTPRQIEKRVKLQAQRAGVNV 233

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRH FA+H+LS+ GDLRS+Q +LGH  LSTTQIYT+++     D + ++YDQ H
Sbjct: 234 DLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHLAQVYDQAH 289

Query: 319 PSITQ 323
           P   +
Sbjct: 290 PRAHK 294


>gi|315604538|ref|ZP_07879601.1| tyrosine recombinase XerC [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313550|gb|EFU61604.1| tyrosine recombinase XerC [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 303

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 141/304 (46%), Gaps = 8/304 (2%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
             W + L   RG+S  T+++Y  D R  L F A    E    +    L+   IR++++  
Sbjct: 7   DRWGEYLRHGRGMSDHTIEAYLGDLRSLLSF-AGLAWEASAAELAEALTQRRIRSWLADT 65

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     ++ R  + ++ F  +  +  I        + + +    LP  L+E +A  L+
Sbjct: 66  LARGGARSTIARHTASVRHFTAWATREGILAHDPAALLTSPRADQRLPAPLDESEARLLL 125

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            N     +        RN AIL L+Y CGLR+SEA  L   ++  +  T+R+ GKG+K R
Sbjct: 126 -NHARDEARGGGPSQLRNWAILELIYACGLRVSEACGLDISSLNREALTVRVTGKGNKER 184

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP  P    A+  +       L        LF G RG  ++P + +  +       G+ 
Sbjct: 185 VVPYGPPAADALDHWLLRGRALLAREGSGDALFLGDRGGRIDPRIVRSMVHAAAARAGVH 244

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRHS ATHLL  G DLR++Q +LGH  L+TTQ YT+V++      +  IY + 
Sbjct: 245 -DVAPHGLRHSTATHLLQGGADLRAVQEMLGHASLATTQRYTHVDTAR----LSAIYQRA 299

Query: 318 HPSI 321
           HP  
Sbjct: 300 HPRA 303


>gi|291299701|ref|YP_003510979.1| integrase family protein [Stackebrandtia nassauensis DSM 44728]
 gi|290568921|gb|ADD41886.1| integrase family protein [Stackebrandtia nassauensis DSM 44728]
          Length = 317

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 91/315 (28%), Positives = 147/315 (46%), Gaps = 15/315 (4%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E +     +    ++ +L  E G S  T++ Y  D    L+ LA           +  + 
Sbjct: 17  EALPASFKEVLGQFVHHLTHECGRSAHTVRGYRADVTSLLVHLAAT-----GTTRLAGVD 71

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
              +R++++ RR Q I   SL R +S +++F  +  ++          +      ++ P 
Sbjct: 72  IAGLRSWLANRRAQGIARASLARKVSAVRAFTAWAHRQGHLDADAGARLSGPSVPHNPPE 131

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L   QA TL       T+ +      R+ A++ LLY  G+R+SE   L   ++   ++ 
Sbjct: 132 ILRTDQAETL----AAATASDGSATGLRDRAVVELLYATGIRVSELCGLDVASVDRSRNV 187

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRY 246
           LR+ GKG K R VP      +A+ +Y      +L  +     L  G+RG  L+P   +R 
Sbjct: 188 LRVFGKGAKERTVPFGIPAARAVDDYLQRARPELAADHSGDALLLGVRGGRLHPSTVRRV 247

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +R      G+P S T H LRHS ATHLL  G DLRS+Q +LGH  + +TQIYT+V+++  
Sbjct: 248 LRDWLSRTGMP-SLTPHGLRHSAATHLLDGGADLRSVQELLGHASIDSTQIYTHVSAER- 305

Query: 307 GDWMMEIYDQTHPSI 321
              +   Y Q HP  
Sbjct: 306 ---LRGAYRQAHPRA 317


>gi|162210085|ref|YP_332479.2| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           1710b]
          Length = 305

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 84/301 (27%), Positives = 137/301 (45%), Gaps = 17/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   + +E GLS+ TL +Y  D + F  +LA        + ++   S   +  +I+ R  
Sbjct: 20  FCDAMWLEHGLSRNTLDAYRRDLQLFAQWLAARH-----VASVDHASEPTLTEYIAARSD 74

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            K    S  R LS  + +  +  +         L + + K++   P  L+E Q   L   
Sbjct: 75  GK--ATSSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEAL--- 129

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L        +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+V
Sbjct: 130 --LAAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLV 187

Query: 201 PLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P        I  Y     P  L       LF   RG  +    F   I++  +   + + 
Sbjct: 188 PFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVH 247

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++   HP
Sbjct: 248 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LKTLHAAHHP 303

Query: 320 S 320
            
Sbjct: 304 R 304


>gi|332289908|ref|YP_004420760.1| site-specific tyrosine recombinase XerC [Gallibacterium anatis
           UMN179]
 gi|330432804|gb|AEC17863.1| site-specific tyrosine recombinase XerC [Gallibacterium anatis
           UMN179]
          Length = 296

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 89/312 (28%), Positives = 145/312 (46%), Gaps = 17/312 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L    + +   L IER LS  TLQSY+      +  L         I   RQ+  + IR 
Sbjct: 2   LQDWLKKYWDYLRIERQLSAKTLQSYQQQIVACVELLT-----NEGITDWRQVDGSVIRF 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            +++ +   + + SL   LS ++ F ++L + +    +    +   K    LP++++ + 
Sbjct: 57  ILTQGKKSGLHEHSLALRLSSLRGFFQFLLRNQQIKVNPTDGISAPKAGKRLPKSIDAES 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D            +  R+ AI+ L+Y  GLR+SE   L  ++I      L++ GK
Sbjct: 117 ISQLLDI------KSKDPLSLRDKAIMELMYSSGLRLSELRGLNLEDINFKARELKVLGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K RI+P       A+ ++ ++            LF    G  L     Q+ + Q    
Sbjct: 171 GNKERILPFGRYAAGALHQWLEVR--LQFNPQDNALFISHLGHRLTSSAIQQRLEQWGIK 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL      H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    + ++
Sbjct: 229 QGLNAHLNPHKLRHSFATHMLEASSDLRAVQELLGHENLSTTQIYTHLNFQH----LAQV 284

Query: 314 YDQTHPSITQKD 325
           YD  HP   +K 
Sbjct: 285 YDSAHPRAKRKK 296


>gi|260912682|ref|ZP_05919168.1| tyrosine recombinase XerC [Pasteurella dagmatis ATCC 43325]
 gi|260633060|gb|EEX51225.1| tyrosine recombinase XerC [Pasteurella dagmatis ATCC 43325]
          Length = 296

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 92/309 (29%), Positives = 151/309 (48%), Gaps = 18/309 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   L IER +S  TL +Y+    + +  L      +  + + ++++ + +R  +++
Sbjct: 5   LEKYWNYLRIERQVSPHTLSNYQRQLNRIVQIL-----NENGMTSWQEVTPSVVRFILAE 59

Query: 78  R-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             +T K+ ++SL   LS ++ FL YL ++     +    +   K+   LP+ ++ +Q   
Sbjct: 60  SSKTDKLHEKSLALRLSALRRFLTYLVQQDELKVNAATGISAPKQGRHLPKNIDAEQVQK 119

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+ N         + ID R+ AIL LLY  GLR+SE   L   +I      +R+ GKG+K
Sbjct: 120 LLSN------DSKEPIDIRDRAILELLYSSGLRLSELQGLNLNSINTRVREVRVIGKGNK 173

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            RIVP       AI ++  +    L       LF    G  L     Q+ +       GL
Sbjct: 174 ERIVPFGRYASHAIQQWLKVR--LLFNPKDDALFVSQLGNRLTHRTIQKRLEVWGIKQGL 231

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    + ++YD 
Sbjct: 232 NSHLNPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LADVYDS 287

Query: 317 THPSITQKD 325
            HP   +K 
Sbjct: 288 AHPRAKRKK 296


>gi|158426110|ref|YP_001527402.1| tyrosine recombinase [Azorhizobium caulinodans ORS 571]
 gi|158332999|dbj|BAF90484.1| tyrosine recombinase [Azorhizobium caulinodans ORS 571]
          Length = 306

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 83/300 (27%), Positives = 138/300 (46%), Gaps = 14/300 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L    +ERG S+ TL +Y  D   F  FL+           I   +  +IRA++++   
Sbjct: 10  FLDMQAVERGASRHTLDAYGRDLADFEDFLSVRDH------GIDAATTDDIRAYLAELTD 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   ++ R LS I+   ++L       +     +   K+   LP+ LN  Q   L+D 
Sbjct: 64  RGLKATTVARRLSAIRQLYRFLYAEGRRGDDPAAVLEGPKRGRPLPKVLNVDQVTRLIDT 123

Query: 141 VLLHTSHETKWIDARNS----AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
                  +    +         ++ LLY  GLRISE +SL P      +  + + GKG K
Sbjct: 124 AHDRAGEDVSSPERLRRLRVVCLVELLYATGLRISELVSL-PAAAARARDVIMVTGKGSK 182

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRRYLG 255
            R+VPL    + A+  Y      +  L +   LF        L      R ++ L    G
Sbjct: 183 ERMVPLSGPAKAAMTAYLAAR-AESGLAVSKWLFPTAAESGHLTRQHAARELKDLAVAAG 241

Query: 256 LPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           +P    + H LRH+FA+HLL++G DLR +Q++LGH  +STTQIYT++  +     + +++
Sbjct: 242 VPPQALSPHVLRHAFASHLLAHGADLRIVQTLLGHADVSTTQIYTHILDERLKSMVRDLH 301


>gi|46446092|ref|YP_007457.1| site-specific tyrosine recombinase XerC [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399733|emb|CAF23182.1| putative XerC Protein [Candidatus Protochlamydia amoebophila UWE25]
          Length = 329

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 89/331 (26%), Positives = 146/331 (44%), Gaps = 38/331 (11%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIF-----LAFYTEEKI---------------- 58
            +L++L++ +  S+ T+++Y  D   F  +      A    E I                
Sbjct: 8   QFLEHLKVVKNASEHTIRNYAIDLNLFKNYQEKQIFAESKLEHISPKICARESYQQRQSC 67

Query: 59  --TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
              I  +  +    IR F++     +   R++ R LS ++SF +YL+ + +   +    +
Sbjct: 68  HDGILKLEDIDRKTIRGFLAWLSANQQNKRTIARRLSSLRSFFRYLQTQNLIQINPTEEL 127

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
            + K +  LP +L+ +Q   L +         T ++  R+  I+ L Y  GLR+SE +SL
Sbjct: 128 ESPKLNKKLPVSLSYEQVSLLFEQ-----PDTTSYLGFRDRTIMELFYSSGLRVSELVSL 182

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP------LF 230
             Q+      T++++GKG K R++P+  +  K I  Y        NL           +F
Sbjct: 183 DRQDFDYSNLTIKLKGKGKKQRLIPITKNAAKWIQSYLLHIERYQNLETHSAESDSNAIF 242

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
               G  L      R         GL    T HT+RH+ ATH L NG DL++IQ +LGH 
Sbjct: 243 LNKWGTRLTTRSVDRKFDLYLTKSGLAGKVTPHTIRHTIATHWLENGMDLKTIQLLLGHR 302

Query: 291 RLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            LSTT IYT V++K       ++Y   HP  
Sbjct: 303 SLSTTTIYTQVSTKLK----QKVYADAHPRA 329


>gi|294142606|ref|YP_003558584.1| integrase/recombinase XerC [Shewanella violacea DSS12]
 gi|293329075|dbj|BAJ03806.1| integrase/recombinase XerC [Shewanella violacea DSS12]
          Length = 308

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 83/311 (26%), Positives = 146/311 (46%), Gaps = 15/311 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +  +L  ER LS  T+++Y  +  +    L       I+     ++S+ +I+  + +
Sbjct: 6   FKQFESHLSSERQLSAHTVRNYLYELHRVTDKLDASASFPIS---WSEISHEQIQHVLGQ 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q +  RSL  +LS +K F  +L    +   +   N+   K++  LP+ ++      L
Sbjct: 63  LHRQGLSPRSLSLTLSAVKQFCDFLLGEGVINANPAKNLSAPKQNKPLPKNMDLDSVTHL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++            +  R+ AI+ L Y  GLR++E  +L   +I      +++ GKG K 
Sbjct: 123 LEI------DADDPLSVRDKAIMELFYSSGLRLAELAALDVLDIRFADRQVKVLGKGSKE 176

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RIVP+      AI  +      +        LF   +G  L     Q  + +  +   L 
Sbjct: 177 RIVPVGRCAIDAIQAWLTFR--EAIPCQDEALFVTAKGNRLAHRSIQARLAKWGQEQALN 234

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           +    H LRHSFATH+L +  DLR++Q +LGH  LSTTQIYT+++ ++    + ++YD  
Sbjct: 235 MRVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQIYTSLDFQH----LAKVYDGA 290

Query: 318 HPSITQKDKKN 328
           HP  ++  K N
Sbjct: 291 HPRASRSKKLN 301


>gi|220917358|ref|YP_002492662.1| tyrosine recombinase XerD [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955212|gb|ACL65596.1| tyrosine recombinase XerD [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 298

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 90/310 (29%), Positives = 154/310 (49%), Gaps = 15/310 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
            L      +L ++ +E+GL++ ++++Y  D R++L  L     +++ +    ++   EI+
Sbjct: 3   ALEPALDLFLAHVRVEKGLAENSVEAYGRDLRRYLEHL-----DELGVDAWERVGRGEIQ 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           A +++   + +  RS  R+LS I+S  + L   ++T       + + +    LP  L+  
Sbjct: 58  AHLAELVRRGLSPRSQARALSAIRSLHRLLAAERVTPADPSDEIESPRPGRRLPGLLSHD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L     L           R+ A+L LLY  GLR+SE +SL   ++  +   L  +G
Sbjct: 118 EVDRL-----LAAPDVRSAAGIRDRAMLELLYATGLRVSELVSLQLNDVNLETRVLVARG 172

Query: 193 KGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG+K RIVP+      A+  Y  +     L+      LF   RG  +    F + + +  
Sbjct: 173 KGNKERIVPVGAPAAAAVKAYLAVARERLLHGRRSKDLFVTPRGGRMTRQGFAKILDRCA 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R  G+    + H LRHSFATHLL  G DLR++Q +LGH  +STTQIYT+V+  +    + 
Sbjct: 233 RRAGIRRRISPHKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHVDRTH----VK 288

Query: 312 EIYDQTHPSI 321
            +YD+ HP  
Sbjct: 289 RLYDRFHPRA 298


>gi|172061520|ref|YP_001809172.1| site-specific tyrosine recombinase XerD [Burkholderia ambifaria
           MC40-6]
 gi|171994037|gb|ACB64956.1| tyrosine recombinase XerD [Burkholderia ambifaria MC40-6]
          Length = 322

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 82/301 (27%), Positives = 133/301 (44%), Gaps = 17/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   L +E GL++ TL +Y  D   F  +LA   +       +       +  +I+ R  
Sbjct: 37  FCDALWLEHGLARNTLDAYRRDLVLFSQWLAAMHD-----APLDSADEAMLIGYIAARSD 91

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            K    S  R LS  + +  +  +         L + + K++   P  L+E Q   L+  
Sbjct: 92  GK--ATSSNRRLSVFRRYYGWAVREHRANADPTLRITSAKQAARFPSTLSEAQVEALL-- 147

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                      +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+V
Sbjct: 148 ---GAPDVGTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLV 204

Query: 201 PLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P        I  Y     P  L       LF   RG  +    F   I++  +   +   
Sbjct: 205 PFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAH 264

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++   HP
Sbjct: 265 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LKTLHATHHP 320

Query: 320 S 320
            
Sbjct: 321 R 321


>gi|94495392|ref|ZP_01301972.1| phage integrase [Sphingomonas sp. SKA58]
 gi|94424780|gb|EAT09801.1| phage integrase [Sphingomonas sp. SKA58]
          Length = 312

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 115/304 (37%), Positives = 168/304 (55%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              W  +L ++R  S  T+++Y+    + + FL  +  E +T   +  L   ++RAF++ 
Sbjct: 22  IDRWRAHLALDRRRSVHTVRAYQATAERLVAFLEQHRGEAVTQAMLASLEQADLRAFLTS 81

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           RR   IG+ S  R LS ++ FL+++             ++  +    LPR ++  +A+ L
Sbjct: 82  RRMDGIGNLSAARELSAVRGFLRFVGGEDARPP----RLKGPRVKRGLPRPVSPDEAMAL 137

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                +  +    WI AR+ A+L LLYG GLRI EA+ LT         TLR+ GK  K 
Sbjct: 138 --AADIAETAREGWIGARDWAVLLLLYGAGLRIGEAMGLTGAVWPLGD-TLRVTGKRGKT 194

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VPLLP +R AI  Y   CP+ L  +   PLFRG RG PL+P + +R ++  R  LGL 
Sbjct: 195 RLVPLLPQLRAAIESYVAACPYPLERDA--PLFRGARGGPLSPALIRRAVQGARGRLGLS 252

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
             TT H LRHSFATHLL  G DLRS+Q +LGH  LS+TQIYT V++ +    +++IY   
Sbjct: 253 ERTTPHALRHSFATHLLGRGADLRSLQELLGHASLSSTQIYTQVDAAH----LLDIYRNA 308

Query: 318 HPSI 321
           HP  
Sbjct: 309 HPRA 312


>gi|308448796|ref|XP_003087755.1| hypothetical protein CRE_30625 [Caenorhabditis remanei]
 gi|308253057|gb|EFO97009.1| hypothetical protein CRE_30625 [Caenorhabditis remanei]
          Length = 543

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 93/323 (28%), Positives = 167/323 (51%), Gaps = 14/323 (4%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E++ +  ++    W+++ +I+   S  TL +Y  D   F+ F      E      ++Q+ 
Sbjct: 233 ELMQYGAMQLLSMWIKDRKIQNQ-SVHTLDAYFRDVSNFIDFCYDKQIE------LKQVE 285

Query: 68  YTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
             ++R +++ R  + ++   SL+R L+ I+ F+K+ K+      +   + +  +++  LP
Sbjct: 286 AADLREYVAYRVEKDQLSTSSLQRHLTSIRQFMKWAKQGGYLEINAADDFQIKRQARPLP 345

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             ++ +    ++D        E K +  R+ AIL LLY  GLR++E  SL  ++I   + 
Sbjct: 346 GMIDIETVNQIMDQPEPEKPIE-KQLWLRDKAILELLYSSGLRLAEVQSLAIRDIDFTRH 404

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            LRI GKG+K RIVP     R +++E+      +    + +  +F   RG  ++P   + 
Sbjct: 405 LLRITGKGNKTRIVPFGSKARDSLIEWLKIYRIWQGEFSPESLVFITQRGTSISPRQIEN 464

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            ++      G+ +    H LRH FA+H+LSN GDLR++Q +LGH  L+TTQIYT+V+   
Sbjct: 465 RVKYQALRAGVNVDLHPHLLRHCFASHMLSNSGDLRAVQEMLGHSNLTTTQIYTHVDF-- 522

Query: 306 GGDWMMEIYDQTHPSITQKDKKN 328
             D + ++YDQ HP       KN
Sbjct: 523 --DHLAQVYDQAHPRAAASKIKN 543


>gi|91791760|ref|YP_561411.1| tyrosine recombinase XerC [Shewanella denitrificans OS217]
 gi|91713762|gb|ABE53688.1| Tyrosine recombinase XerC [Shewanella denitrificans OS217]
          Length = 321

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 87/325 (26%), Positives = 149/325 (45%), Gaps = 26/325 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL---------------AFYTEEKITIQT 62
              + + L  ER LS  T+++Y  + R+   +L                       T + 
Sbjct: 7   FARFERYLTSERQLSPYTVRNYLFELRRAEPYLFTTLSLPEYAAQTSQTNAITSPQTDEQ 66

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
              LS+  ++A ++K   Q +  RSL   LS +K F +YL      T +    +   K++
Sbjct: 67  WLALSHEALQALLAKLHRQGLSPRSLSLCLSALKQFFEYLLAEDCITHNPAKGLSAPKQA 126

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             LP+ ++      L+             +  R+ AI+ L Y  GLR+ E  SL   +I 
Sbjct: 127 KPLPKNIDVDAISHLL------AIDGDDPLVIRDRAIMELFYSSGLRLGELASLNYGDIH 180

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
                +++ GKG K R VP+     +A+  ++      +  + +  LF   +GK L+   
Sbjct: 181 LGLQEVKVLGKGGKERRVPVGKLAMEALALWHTQRLLLVQAD-EPALFVSNQGKRLSHRS 239

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            Q  + +  +   L +    H LRHSFATH+L + GDLR++Q +LGH  LSTTQIYT+++
Sbjct: 240 IQARMAKWGQNQALSVPVHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTSLD 299

Query: 303 SKNGGDWMMEIYDQTHPSITQKDKK 327
            ++    + ++YD  HP   +  +K
Sbjct: 300 FQH----LAKVYDGAHPRAKKGREK 320


>gi|293609893|ref|ZP_06692195.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828345|gb|EFF86708.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 304

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 166/305 (54%), Gaps = 14/305 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+  +I+   S+ T+ +YE D + FL F             +R +  +++R ++++R  
Sbjct: 11  WLKERKIQNQ-SEHTINAYERDVKSFLEFCEHKQ------LDLRNIEASDLREYLAQRVE 63

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           Q ++   S++R L+ I+ F+K+ ++ K    +   + +  ++   LP  ++ +    ++D
Sbjct: 64  QDQLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILD 123

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             +     + + +  R+ A+L LLY  GLR++E   LT +++  ++  +RI GKG+K RI
Sbjct: 124 QPMPEKPVDQQ-LWLRDKAMLELLYSSGLRLAELQGLTVKDVDFNRQLVRITGKGNKTRI 182

Query: 200 VPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP     ++++L +      +  + +    +F  +RG  L P   ++ ++   +  G+ +
Sbjct: 183 VPFGKKAKESLLNWLKVYKIWKGHFDQNDSVFISLRGGALTPRQIEKRVKLQAQRAGVNV 242

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRH FA+H+LS+ GDLRS+Q +LGH  LSTTQIYT+++     D + ++YDQ H
Sbjct: 243 DLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHLAQVYDQAH 298

Query: 319 PSITQ 323
           P   +
Sbjct: 299 PRAHK 303


>gi|170725258|ref|YP_001759284.1| tyrosine recombinase XerD [Shewanella woodyi ATCC 51908]
 gi|169810605|gb|ACA85189.1| tyrosine recombinase XerD [Shewanella woodyi ATCC 51908]
          Length = 308

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 142/304 (46%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L +L   RGLS  TL +Y  D   F  +L            +   +   IR ++  
Sbjct: 19  IELFLDDLWSSRGLSSNTLSAYRTDLCHFEHYLIKSGI------ALCDATQGTIRDYLDV 72

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  +     S  R +S ++ F  +L  +          +++ + +  LP +L+E    +L
Sbjct: 73  RFEKGFARTSSARLISSLRRFYGFLVIQNRIEVDPTAQIKSPQLARKLPDSLSEADVDSL 132

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +        +    I+ R+ A+L LLY  GLR++E +SLT + I   Q  +R+ GKG K 
Sbjct: 133 LSE-----PNLDDPIECRDKAMLELLYATGLRVTELVSLTMEQISLRQGVVRVVGKGGKE 187

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VPL       +  Y      +L    +   LF   RG  +    F   I+      G+
Sbjct: 188 RLVPLGEMAISEVESYLVAARGELLKQKMSDVLFPSKRGSMMTRQTFWHRIKHYALRAGI 247

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        + +++ +
Sbjct: 248 STDLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKAR----LSQLHSE 303

Query: 317 THPS 320
            HP 
Sbjct: 304 HHPR 307


>gi|269213747|ref|ZP_05982773.2| tyrosine recombinase XerC [Neisseria cinerea ATCC 14685]
 gi|269145670|gb|EEZ72088.1| tyrosine recombinase XerC [Neisseria cinerea ATCC 14685]
          Length = 329

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 84/314 (26%), Positives = 150/314 (47%), Gaps = 17/314 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL      +L+N+  E G S+ T+ +Y  D     +       E++        +  +  
Sbjct: 33  ELAAYLDAYLENIVRE-GKSEHTVAAYRRD-----LQELLALLEEMPSANPPNCTRGDFV 86

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
             + +   + +G+R+L R LS  + +  +L KR +       +++  K+   +P+AL ++
Sbjct: 87  QALRRLSGRGLGERTLARKLSSWRQYCVWLVKRGLMHADPTADIKPPKQPERIPKALPQE 146

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
                ++ +L     +   +  R+ A+  L+YG GLR+SE   L   ++  D+  +R+ G
Sbjct: 147 ----CLNQMLDLPVDDGDALALRDHALFELMYGSGLRLSEIHGLDTGDVWLDEGWVRVTG 202

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R VPL     +A+  Y  L     +      LF G  G  L+    Q+ +     
Sbjct: 203 KGRKQRQVPLTGKSVEALKNYLPLRQTASDGK---ALFTGRNGTRLSQRQIQKRLESWAA 259

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G     + H +RHS+A+HLL +  D+R++Q +LGH  LSTTQIYT ++     D +  
Sbjct: 260 QNGDGRHISPHMMRHSYASHLLQSSRDIRAVQELLGHSSLSTTQIYTKLDF----DHIAR 315

Query: 313 IYDQTHPSITQKDK 326
           +YD+ HP   +++K
Sbjct: 316 LYDEAHPRAKRQEK 329


>gi|302381671|ref|YP_003817494.1| integrase [Brevundimonas subvibrioides ATCC 15264]
 gi|302192299|gb|ADK99870.1| integrase family protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 314

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 127/319 (39%), Positives = 177/319 (55%), Gaps = 12/319 (3%)

Query: 7   PEIVSFELLKE--RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           P++   +L        WL++L  ER LS  TL++Y    RQ+L FL  +  E   +  + 
Sbjct: 4   PQLGGPDLTAAGALAAWLEHLAHERRLSPRTLEAYGHIGRQYLAFLERHRGEAQRLPDLG 63

Query: 65  QLSYTEIRAFISKRR--TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
            ++  E+RA +++RR     +  RSL ++LS I++F  +L +R  T    +  +R  +  
Sbjct: 64  TVTAAELRAHLAERRSGDHPLNARSLSQTLSAIRTFHVFLDRRCDTPAPQLALVRGPRVK 123

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            +LPR ++  QA  L+    L       W   R++A+L LLYGCGLRISEALSLT  +  
Sbjct: 124 ATLPRPVSADQARGLLAEPGLD-PDVEPWEALRDTAVLSLLYGCGLRISEALSLTRADAP 182

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
             + TLRI GKG K R+VP+LP VR A+       PF L+      LFR  RG  L+   
Sbjct: 183 LPE-TLRITGKGGKTRLVPVLPVVRSAVDAALAAQPFPLS--PPDALFRARRGGALSARH 239

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            Q  +++LR  LGLP S T H LRHSFATHLL  G DLRSIQ +LGH  LSTTQ YT V+
Sbjct: 240 VQATVQRLRGRLGLPASATPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQKYTAVD 299

Query: 303 SKNGGDWMMEIYDQTHPSI 321
           + +    ++  Y   HP  
Sbjct: 300 AAH----LLGAYAAAHPRA 314


>gi|146277571|ref|YP_001167730.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145555812|gb|ABP70425.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 311

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 83/323 (25%), Positives = 144/323 (44%), Gaps = 20/323 (6%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +    + +    +L+    E   ++ T  +Y  D + F  +LA  +EE  T         
Sbjct: 1   MAPAGMERWISAFLEAQAAELDAARNTRLAYGRDLKDFAGWLARRSEEFATA------DR 54

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             + A++     Q +   +  R LS I+   ++  +     ++  + +R   ++  LP+ 
Sbjct: 55  AAVEAYLVFCDAQGLSPATRARRLSSIRQLYRFAHEEGWRADNPAIRLRGPGRARRLPKT 114

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L  ++   L+D               RN  +L LLY  G+R+SE + L       +   +
Sbjct: 115 LEIEEVDRLLDA--ARDKGRRAADQVRNRCLLELLYATGMRVSEMVGLPVAAARGNPQMI 172

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-------LNPG 241
            ++GKG K R+VPL P  R+A+ ++  +         +          P       L   
Sbjct: 173 LVRGKGGKERMVPLSPPAREALADWLRVRDEAEAAGQKAGRVPSRFLFPGSGAAGHLTRE 232

Query: 242 VFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            F   I+Q+    G+ P   T HTLRH+FATHLL+ G DLR IQ++LGH  LSTT+IYT+
Sbjct: 233 YFYVLIKQIAVLAGVDPSKVTPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTH 292

Query: 301 VNSKNGGDWMMEIYDQTHPSITQ 323
           V  ++    + ++  + HP   +
Sbjct: 293 VLDEH----LKDLVLRHHPLARE 311


>gi|171915713|ref|ZP_02931183.1| hypothetical protein VspiD_31120 [Verrucomicrobium spinosum DSM
           4136]
          Length = 297

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 92/309 (29%), Positives = 143/309 (46%), Gaps = 15/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +      +L +L  ERGLS      Y+   R+ L   A +   +     I  ++   I  
Sbjct: 1   MTAHIDAFLLHLATERGLSVN----YQLLVRRVLETFASWLHREHDSDDIADVTTQHISG 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+  R+   +   SL+  L  +K F ++L  R          +   +   SLP  LNE +
Sbjct: 57  FLGHRKGDGLIPSSLRVELVALKIFFRWLAARGRRLGDPAEPVLPPRVEQSLPDTLNEPE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+++V          +D R+ AIL + Y  GLRISE      +N+  ++  +R+ GK
Sbjct: 117 VRRLLESVTGQEP-----LDLRDRAILEIFYASGLRISEVTGARVENLSLEEGWVRVTGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G+K R+VP+  + R AI  Y D     L     +  +F    G  L      + +++   
Sbjct: 172 GNKTRLVPVGGAARDAISRYLDSARPQLVKPKTKSFIFLNRNGGQLTTARVWQIVKERAA 231

Query: 253 YLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             G+       H LRHSFATHLL NG DLR IQ +LGH  ++TTQIYT+V+ K     + 
Sbjct: 232 AAGMDADRIYPHLLRHSFATHLLGNGADLRVIQEMLGHADIATTQIYTHVDQKR----LK 287

Query: 312 EIYDQTHPS 320
           + + + HP 
Sbjct: 288 DTHRKFHPR 296


>gi|308234475|ref|ZP_07665212.1| integrase family protein [Atopobium vaginae DSM 15829]
 gi|328944068|ref|ZP_08241533.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829]
 gi|327492037|gb|EGF23811.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829]
          Length = 337

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 91/322 (28%), Positives = 158/322 (49%), Gaps = 23/322 (7%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           +  S  + +  ++++Q+L   + LS  T ++YE D + ++ +L   +        +  +S
Sbjct: 31  DSYSAYVQQLMESFIQHLMTTQNLSPNTTRAYETDLKAYVRWLIKNSY------DLLDIS 84

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
           + ++R+++++    +   R++ R LS I+++ K+L ++ +T + +   + + K   +LP 
Sbjct: 85  HKQLRSYLAQLYAARYASRTINRHLSAIRAWYKWLVRKGLTKKDSAAALASPKIPKTLPH 144

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L+E     L+      T  E      R+ A+L LLY  G RISEA  L   +I  D   
Sbjct: 145 VLSESSIEKLL-----ATCQEDTVCGLRDRALLELLYATGCRISEAAHLCVSDISFDSKQ 199

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--------NLNIQLPLFRGIRGKPLN 239
           +R+ GKG K RIVP+ P   + +  Y       L               +F   RGK ++
Sbjct: 200 VRLFGKGSKERIVPIYPECARILHMYLTTARPVLLSKQKNQAQAQTNQHVFISTRGKAMS 259

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               +       R   L    T HT+RHSFAT LLS+G DLRS+Q +LGH  L+TTQIYT
Sbjct: 260 DQALRYVFEHYMRLSHLQEIATPHTMRHSFATELLSHGADLRSVQELLGHASLATTQIYT 319

Query: 300 NVNSKNGGDWMMEIYDQTHPSI 321
           +V+     + + +   + +P  
Sbjct: 320 HVS----VNALKDAARRANPRA 337


>gi|149927220|ref|ZP_01915477.1| Tyrosine recombinase XerD [Limnobacter sp. MED105]
 gi|149824159|gb|EDM83380.1| Tyrosine recombinase XerD [Limnobacter sp. MED105]
          Length = 299

 Score =  240 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 88/308 (28%), Positives = 149/308 (48%), Gaps = 17/308 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +   L +E GL+K TLQ+Y  D +Q   +L  +  E      + Q S   IR  +  
Sbjct: 8   IDEFCTTLWLEEGLAKATLQAYRGDLQQLGNWLDEHFAEN-----LLQASNEHIRNHVHD 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +   SL R LS  K F  +L   +   ++    +++ K+   +P+ L+EKQ L L
Sbjct: 63  LLE--LKPSSLNRKLSSYKRFYLWLNTTRQREDNPCSQLQSAKRGLRIPKTLSEKQVLDL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +          +     R+ A+L  +Y  GLR+SE +++  + +  +   +++ GKG K 
Sbjct: 121 L-----SAPDLSNAAGQRDKAMLEFMYASGLRVSELVNMPLRAVDLNVGAVKVLGKGKKE 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP+    R AI  Y      +L        LF    G P+    F +  ++L    G+
Sbjct: 176 RLVPMGEPARLAIQLYLQQARGELLKGKTSDFLFVTHFGTPMTRQGFWKNTKRLALIAGI 235

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + H LRH+FATHL+++G DLR +Q +LGH  + TTQIYT+V  ++    +  + +Q
Sbjct: 236 NTTVSPHVLRHAFATHLINHGADLRVVQLLLGHADIGTTQIYTHVAKEH----LHTLLNQ 291

Query: 317 THPSITQK 324
           +HP    +
Sbjct: 292 SHPRSKSR 299


>gi|258648906|ref|ZP_05736375.1| tyrosine recombinase XerD [Prevotella tannerae ATCC 51259]
 gi|260850938|gb|EEX70807.1| tyrosine recombinase XerD [Prevotella tannerae ATCC 51259]
          Length = 296

 Score =  240 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 147/304 (48%), Gaps = 13/304 (4%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ++    +   + +E+GLS  T ++Y  D  + + FL            I  +   ++  F
Sbjct: 1   MELTDKYKTYILLEQGLSDNTREAYMHDVEKLIDFLQQEGI------DILNVKLDDLHRF 54

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
                   I  RS+ R LSG++SF  +L             + + K    LP  L+ ++ 
Sbjct: 55  TEALTDVGIMARSINRILSGVRSFYHFLLLEGYLEADPTQLLESPKVGAHLPTVLSIEEV 114

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+         ++    AR+ AI+ +LY CGLR+SE   L   ++  D+  +RI GKG
Sbjct: 115 DALL-----AVIDQSTKEGARDHAIIEILYSCGLRVSELCFLMLSDLYLDEGFIRIIGKG 169

Query: 195 DKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRR 252
           +K RIVP+ P   K +  +  +    ++    +  +F   +RGK L+       ++    
Sbjct: 170 NKQRIVPISPRAVKELKNWLLIRHEINIKKGEEDYVFVSALRGKHLSRITVFHNLKVYAA 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+  + + HTLRH+FATHLL  G +LR+IQ +LGH  LSTTQ+YTN++ +     +++
Sbjct: 230 EAGITKNISPHTLRHTFATHLLEGGANLRAIQMMLGHTDLSTTQVYTNIDRRFIRQQILD 289

Query: 313 IYDQ 316
            + +
Sbjct: 290 HFPR 293


>gi|213964731|ref|ZP_03392931.1| tyrosine recombinase XerC [Corynebacterium amycolatum SK46]
 gi|213952924|gb|EEB64306.1| tyrosine recombinase XerC [Corynebacterium amycolatum SK46]
          Length = 304

 Score =  240 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 90/313 (28%), Positives = 143/313 (45%), Gaps = 26/313 (8%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S  +     ++L  L   R LS  T+++Y  D    L            +  I +LS  
Sbjct: 17  LSANIEAILMDFLDELTYSRRLSGATVRAYRADLMPLLA----------GLDHISELSTP 66

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            IRA +  +  +     SL R  + I+ F  +L  R+I      L +   KK   LP  L
Sbjct: 67  VIRAHLGAKHAEGAARSSLARLTTSIRQFCSWLVARQILDADPSLRLSTPKKHQHLPEVL 126

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           + ++    ++      S E   + AR+ AI+ LLY  G+R+ E       ++   +  + 
Sbjct: 127 SPEKVEEAIE----KVSSEDSAVAARDLAIVELLYATGMRVEELCKADVSDVNFSRHIIS 182

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           + GKGDK RIVP       A+  +  +   F  +   +  LF G+RG  LNP   +R I 
Sbjct: 183 VVGKGDKQRIVPFGAPAEAALKGWLQVRGNFPASAQAEHALFLGVRGGRLNPRQARRVIH 242

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +           + H LRHS AT ++  G DLR +Q +LGH  L+TTQIYT+V++    D
Sbjct: 243 KWA-------DVSPHALRHSAATAMVEGGADLRVVQEMLGHSSLATTQIYTHVSA----D 291

Query: 309 WMMEIYDQTHPSI 321
            + E++ + HP  
Sbjct: 292 RLREVHKRAHPRA 304


>gi|116491053|ref|YP_810597.1| tyrosine recombinase XerC subunit [Oenococcus oeni PSU-1]
 gi|118586889|ref|ZP_01544323.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163]
 gi|290890534|ref|ZP_06553609.1| hypothetical protein AWRIB429_0999 [Oenococcus oeni AWRIB429]
 gi|116091778|gb|ABJ56932.1| tyrosine recombinase XerC subunit [Oenococcus oeni PSU-1]
 gi|118432721|gb|EAV39453.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163]
 gi|290479930|gb|EFD88579.1| hypothetical protein AWRIB429_0999 [Oenococcus oeni AWRIB429]
          Length = 307

 Score =  240 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 82/301 (27%), Positives = 146/301 (48%), Gaps = 10/301 (3%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + + L+ ER  S LTL++Y  D  +F+ F +    +    +    +   ++R +++  
Sbjct: 9   KKYEEYLQAERQYSTLTLKAYREDIGEFVNFFS----QNGGFKDFSAIDRFDVRIYLNNL 64

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +K+   S+ R +S ++SF  +L +  +  ++   N+     +  LP  L   + +   
Sbjct: 65  YERKLAKTSIARKISSLRSFYHFLIENSLAKKNPFANIEFRSSNKKLPEFLYPAEVI--- 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L   +        RNSA++ LLY  G+RI E  +LT   I  +   + I GKG K R
Sbjct: 122 -EYLRAAADPQNDQYLRNSALIELLYATGMRIFEITNLTFSQIDFNSQIVDITGKGKKQR 180

Query: 199 IVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           I+P       ++ +Y                 +F   RG+ L     +  ++Q+ +   L
Sbjct: 181 IIPFGKPALASLKQYLPWREKTMQKFSEKHSYIFINTRGRQLTETGAEYILKQVSKRSKL 240

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             +   H LRHSFATHLL+NG D+R++Q +LGH  LSTTQIYT++ ++N  +   + +D+
Sbjct: 241 TANIHPHMLRHSFATHLLNNGADIRTVQELLGHASLSTTQIYTHITTENLQENYKKFFDR 300

Query: 317 T 317
            
Sbjct: 301 A 301


>gi|86140290|ref|ZP_01058849.1| putative site-specific recombinase [Leeuwenhoekiella blandensis
           MED217]
 gi|85832232|gb|EAQ50681.1| putative site-specific recombinase [Leeuwenhoekiella blandensis
           MED217]
          Length = 298

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 150/307 (48%), Gaps = 12/307 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              ++  LE+ER  SK T+ +Y+ D   F +FL     E   ++  +++SY  +RA+I  
Sbjct: 3   FSAFINYLELERKYSKHTVLAYQKDLEAFFLFLN----EHYAVEDPKEVSYVYVRAWIVH 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +  RS+ R +S +K+F K+L+K      S +   ++LK    +    +E +  T+
Sbjct: 59  LTDVGVSHRSINRKISSLKAFFKFLQKTGDIEVSPLAKHKSLKIKKEIQVPFSETEVNTV 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +            + + R+ AI+ L Y  G+R SE ++L   +I  DQ  +++ GK +K 
Sbjct: 119 IKM----LQSGEDFSELRDLAIVTLFYATGMRRSELINLKVADIDFDQHNIKVLGKRNKE 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RI+PL+P +   + +Y  +            L    +G  L      R I +        
Sbjct: 175 RIIPLIPWLEDGLKKYLSVRENYGVDKNSGFLLLTDKGDKLYETFVCRIINRYFSRASQK 234

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
             T+ H LRH+FATHLL+NG DL +++ +LGH  L++TQ+YT+ +       +  +Y   
Sbjct: 235 TKTSPHMLRHTFATHLLNNGADLNAVKELLGHASLASTQVYTHTSIAE----LGRVYKNA 290

Query: 318 HPSITQK 324
           HP   +K
Sbjct: 291 HPRNLKK 297


>gi|83859702|ref|ZP_00953222.1| integrase/recombinase XerD [Oceanicaulis alexandrii HTCC2633]
 gi|83852061|gb|EAP89915.1| integrase/recombinase XerD [Oceanicaulis alexandrii HTCC2633]
          Length = 311

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 90/311 (28%), Positives = 136/311 (43%), Gaps = 24/311 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  +  ERG ++ TL +Y  D       L  +         +      ++  F+S   +
Sbjct: 9   FLDMMAAERGAARNTLDAYRRDLEDAAQRLGAHG------TGLESAQTADVERFLSDLAS 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +   +  R LS +K + ++L K  +  +     +   KK   LP+ L+E Q  TL D 
Sbjct: 63  DGLSPATAARRLSALKRYYRFLLKEGLRADDPAKTLSGPKKPRPLPKVLSEGQVETLFD- 121

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                         R  A+L LLY  GLR+SE ++L        +  L + GKG K R+V
Sbjct: 122 ---AADRIEGADGFRLRALLELLYAGGLRVSELVTLPLAAFARSERCLVVTGKGGKERLV 178

Query: 201 PLLPSVRKAILEYYDLCPFDLNLN-------IQLPLFRGI--RGKPLNPGVFQRYIRQLR 251
           PL  S  +A+  Y  +    L              LF     R   L    F + ++ L 
Sbjct: 179 PLTDSAIRAVEAYKAVRADHLPSRAAVTHAVASRYLFPSRTARDGHLTRERFAQLLKALS 238

Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              GL P   + H +RH+FATHLL+NG DLRS+QS+LGH  +STT+IYT+V        +
Sbjct: 239 LAAGLDPQQVSPHVMRHAFATHLLANGADLRSVQSLLGHADVSTTEIYTHVLEAR----L 294

Query: 311 MEIYDQTHPSI 321
             +    HP  
Sbjct: 295 KALVHDAHPLA 305


>gi|218885463|ref|YP_002434784.1| tyrosine recombinase XerD [Desulfovibrio vulgaris str. 'Miyazaki
           F']
 gi|218756417|gb|ACL07316.1| tyrosine recombinase XerD [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 290

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 83/302 (27%), Positives = 135/302 (44%), Gaps = 16/302 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L IERGL++ TL +Y  D   F  FLA           +   +   +  +I   R 
Sbjct: 4   YLEYLLIERGLAENTLAAYAADLADFAGFLAQ------GGIDLEAATEQTLFLYIVDLRR 57

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  R+L R LS ++    +   +       +  + N K   +LP  L   +   ++  
Sbjct: 58  RGLTSRTLSRHLSALRGLFAHGVAQGQLAADPLRYLENPKLPRTLPDVLTRDEMAAVL-- 115

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                   +  +  R+  +L LLY  GLR+SE   L P +       +R+ GKG K RIV
Sbjct: 116 ---ARPDLSDRLGFRDRTMLELLYASGLRVSELCGLRPLDFDPMTGLVRVFGKGSKERIV 172

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+  +  K +  Y           ++  LF    GK L      + +++     G+    
Sbjct: 173 PVHDTAAKLLSAYIRD-WRPAFRPVEDALFLNRSGKGLTRQAVWKVVKRHVAEAGIRKDI 231

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + HT RHSFATHLL  G DLR++Q +LGH  ++ T+IYT+V      D + +++   HP 
Sbjct: 232 SPHTFRHSFATHLLDGGADLRTVQMLLGHADIAATEIYTHV----QADRLRQVHRAHHPR 287

Query: 321 IT 322
             
Sbjct: 288 SR 289


>gi|309805721|ref|ZP_07699761.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV
           09V1-c]
 gi|308164974|gb|EFO67217.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV
           09V1-c]
          Length = 300

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 82/308 (26%), Positives = 143/308 (46%), Gaps = 15/308 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   L+ ER  S  T ++Y  D  +   F      E        +LS  +I  FI     
Sbjct: 4   YYNYLKNERNYSINTCKAYMDDLSEARTFFV----ENGGFIDWIKLSSRDIEIFIQYLAQ 59

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +K    +  R +S ++SF ++L KR I   + +  +    +   LP  L   + + ++ +
Sbjct: 60  KKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGEHKKLPEFLYNDEMVKVLKS 119

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +       T  +  RN A+L L Y  G+R+SE  +L  + I  + + + + GKG+K R V
Sbjct: 120 I-----STTTPLGLRNMALLELFYATGMRVSEIANLKLEQIDFELNLILVHGKGNKDRYV 174

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
                 + A+  Y       L L+      +F    G  +     +  I+ +    G+  
Sbjct: 175 AFGEEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNRITSRGLEYIIKNIFLNAGVSA 234

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           S   H LRH+FAT +L+NG DLR++Q +LGH  +STTQIYT+V  ++    + +IY +  
Sbjct: 235 SVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQH----LCDIYHKYF 290

Query: 319 PSITQKDK 326
           P   ++++
Sbjct: 291 PRDNKENE 298


>gi|269302896|gb|ACZ32996.1| putative tyrosine recombinase XerC [Chlamydophila pneumoniae
           LPCoLN]
          Length = 312

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 86/321 (26%), Positives = 144/321 (44%), Gaps = 22/321 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT-------------EEKITI 60
           ++    ++L  L++ +  S  TL++Y  D     IFL                 + K++ 
Sbjct: 1   MIASIYSFLDYLKMVKSASPHTLRNYCLDLNGLKIFLEERGNLAPSSPLQLATEKRKVSE 60

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
                 +   +R +I+K        R++KR LS IKSF  Y   +KI  E+    +   +
Sbjct: 61  LPFSLFTKEHVRMYIAKLIENGKAKRTIKRCLSSIKSFAHYCVVQKILLENPAETIHGPR 120

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LP  +   Q   L+      T   +K+   R+  ++ L Y  GLRISE +++  Q+
Sbjct: 121 LPKELPSPMTYAQVEVLM-----ATPDISKYHGLRDRCLMELFYSSGLRISEIVAVNKQD 175

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                  +RI+GKG K RI+P+  +  + I  Y +             +F    G+ ++ 
Sbjct: 176 FDLSTHLIRIRGKGKKERIIPVTSNAIQWIQTYLNHPDRKRLEKDPQAIFLNRFGRRIST 235

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               R  ++  R  GL    T HT+RH+ ATH L +G DL++IQ++LGH  L TT +YT 
Sbjct: 236 RSIDRSFQEYLRRSGLSGHITPHTIRHTIATHWLESGMDLKTIQALLGHSSLETTTVYTQ 295

Query: 301 VNSKNGGDWMMEIYDQTHPSI 321
           V+ K       + + + HP  
Sbjct: 296 VSVKLK----KQTHQEAHPHA 312


>gi|77359067|ref|YP_338642.1| site-specific recombinase [Pseudoalteromonas haloplanktis TAC125]
 gi|76873978|emb|CAI85199.1| site-specific recombinase [Pseudoalteromonas haloplanktis TAC125]
          Length = 315

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 81/330 (24%), Positives = 160/330 (48%), Gaps = 23/330 (6%)

Query: 1   MEGNNLPEI--VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI 58
           M  N  P I  +S         +   L+ ER  S  T+  Y        ++ +   ++  
Sbjct: 1   MSDNPAPNISDLSDNWRTPITLFSDYLKFERQYSAHTVNQYVSQLGFAALYFSKLCDDWF 60

Query: 59  TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT----ESNIL 114
           ++Q         IR +    R++++  R++   LS I+S  K+LK + I       +  +
Sbjct: 61  SVQG------EHIRRYSMALRSKQLSGRTISLKLSCIRSLYKFLKAKNIAKQAHYHNPAV 114

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            ++  K +  LP+ L+  Q   L++        + + +  R+ A++ L+Y  GLRISE +
Sbjct: 115 GIKGPKFAKPLPKNLDVDQMARLLEIP------DDEPLAIRDKAMMELMYSSGLRISELV 168

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
               Q+I      + ++GKG+K R++P+      A+ ++  + P   N + ++ +F   +
Sbjct: 169 GANLQDISAANGEILVRGKGNKERLIPVGSKALNALKKWLIIRPQFANPD-EVAVFLSSK 227

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              ++    +  +++     G+      H LRHSFA+H+L + GDLR++Q +LGH  LS 
Sbjct: 228 KNRISVRQVRLRMQEWGIKQGISSQVHPHKLRHSFASHILESSGDLRAVQELLGHSSLSA 287

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           TQ+YT+++ ++    + ++YD THP   ++
Sbjct: 288 TQVYTHLDFQH----LAKVYDNTHPRAKKR 313


>gi|169630285|ref|YP_001703934.1| site-specific tyrosine recombinase XerC [Mycobacterium abscessus
           ATCC 19977]
 gi|169242252|emb|CAM63280.1| Tyrosine recombinase XerC [Mycobacterium abscessus]
          Length = 304

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 85/313 (27%), Positives = 141/313 (45%), Gaps = 10/313 (3%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++ +L      + ++L +ERG S  T ++Y  D       L+    E     T+  LS  
Sbjct: 1   MTPQLAAILDEFAEHLALERGRSVHTQRAYRGDLTLLFDHLSASNPE----ATLADLSLP 56

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R+++  +  Q     ++ R  S +K F  +  +R +      + ++  K   +LP  L
Sbjct: 57  VLRSWLGAQARQGAARSTVARRTSAVKIFTAWATRRGLLPTDPAIRLQQPKSRRTLPAVL 116

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            + QA   +       + +   +  R+  I+ +LY  G+R+SE   L   +I   +  LR
Sbjct: 117 RQDQAAAAM-EAAHSGAEQDDPMALRDRLIVEMLYATGIRVSELCGLDIDDIDRPRKVLR 175

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIR 248
           + GKGDK R VP       A+  + D     L +      L  G RG+ ++P   +  + 
Sbjct: 176 VLGKGDKERTVPFGDPAADALSAWLDRGRPHLAVPASGAALLLGARGRRVDPRQVRTVVH 235

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           Q    +        H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V       
Sbjct: 236 QTMSAVPGAPDIGPHGLRHSAATHLLEGGADLRVVQELLGHSTLATTQLYTHVTVAR--- 292

Query: 309 WMMEIYDQTHPSI 321
            +  ++DQ HP  
Sbjct: 293 -LRAVHDQAHPRA 304


>gi|163848038|ref|YP_001636082.1| integrase family protein [Chloroflexus aurantiacus J-10-fl]
 gi|222525926|ref|YP_002570397.1| integrase family protein [Chloroflexus sp. Y-400-fl]
 gi|163669327|gb|ABY35693.1| integrase family protein [Chloroflexus aurantiacus J-10-fl]
 gi|222449805|gb|ACM54071.1| integrase family protein [Chloroflexus sp. Y-400-fl]
          Length = 286

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 82/290 (28%), Positives = 138/290 (47%), Gaps = 13/290 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  +  ER +S  T  +Y  D  Q   FL      +  I+    +    + AF+   +
Sbjct: 7   QFLAYIADERKMSANTTIAYRTDLDQLCAFL-----HERGIEHWSDVDSETMMAFVINLK 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            ++  + ++ R L+ IKSF  +LK+R +        +   +     PRA+++ Q   L++
Sbjct: 62  EKRYANSTMARRLAAIKSFFSFLKERNVIHHDPTDQLDAPRVDRFPPRAISQHQVDELLE 121

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             L + + E      R+ A+L +LY  G+R+SE ++L   ++  D  T+R +G+  + R 
Sbjct: 122 VPLQNGTPE----GIRDKAMLEVLYATGMRVSELVALNVDDVAFDHRTVRCRGRQGRERT 177

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +PL      A+ EY D+    L          LF   RGK L    F   ++     +G+
Sbjct: 178 IPLSDPALTALEEYLDIARPQLARQAPDDPEALFLNHRGKRLTRQGFWLILKTYAEQVGM 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
               T H LRHSFA H L NG DLR +Q  LGH  ++TTQ+Y ++  ++ 
Sbjct: 238 H-DLTPHMLRHSFAAHQLRNGVDLRELQERLGHASIATTQMYAHLAEESS 286


>gi|167561800|ref|ZP_02354716.1| site-specific tyrosine recombinase XerD [Burkholderia oklahomensis
           EO147]
          Length = 325

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 82/301 (27%), Positives = 135/301 (44%), Gaps = 17/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   + +E GLS+ TL +Y  D + F  +LA    E      +   +   +  +I+ R  
Sbjct: 40  FCDAMWLEHGLSRNTLDAYRRDLQLFAQWLAAQHAEN-----VDHANEAMLTGYIAARSD 94

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            K    S  R LS  + +  +  +         L + + K++   P  L+E Q   L+  
Sbjct: 95  GK--ATSSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALL-- 150

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                      +  R+  +L L+Y  GLR+SE +++    +  ++  +R+ GKG K R+V
Sbjct: 151 ---AAPDVDTPLGLRDRTMLELMYASGLRVSELVTVKSVEVGLNEGVVRVTGKGSKERLV 207

Query: 201 PLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P        I  Y     P  L       LF   RG  +    F   I++  +   +   
Sbjct: 208 PFGEVAHGWIERYLRDGRPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAH 267

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++   HP
Sbjct: 268 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LKTLHAAHHP 323

Query: 320 S 320
            
Sbjct: 324 R 324


>gi|146329514|ref|YP_001210015.1| tyrosine recombinase XerD [Dichelobacter nodosus VCS1703A]
 gi|146232984|gb|ABQ13962.1| tyrosine recombinase XerD [Dichelobacter nodosus VCS1703A]
          Length = 297

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 94/314 (29%), Positives = 151/314 (48%), Gaps = 19/314 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +  +L ++ + ++  L  + GLS  TL +Y  D +Q    LA    +  TI+ + Q+   
Sbjct: 1   MDTKLTQDIELFIDYLWTQVGLSDATLSAYRGDLQQVQKILADVPLKSATIEQMMQV--- 57

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
                +++   +     S+ R  S +  F  Y  ++K  TE+ +  +   K    LP+ +
Sbjct: 58  -----LAQFHDRGYSHTSMARMRSSLNRFFSYQIEQKERTENPMHFLGRTKIRRHLPQTM 112

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +E     L     L        +  R+ A+L LLY CGLR+SE + LT   I  D   ++
Sbjct: 113 SESDVEAL-----LSAPDVQTILGLRDRAMLELLYACGLRVSELVGLTLHQIALDVGYVQ 167

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           I GKGDK R+VP      + +  Y     P  L   +   +F   RG  L+   F   ++
Sbjct: 168 ILGKGDKERLVPFGEIAHEWLQRYIQEARPQLLGQKMSDYVFVSQRGAALSRQAFWYRLK 227

Query: 249 QLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                +GL     + HTLRH+FA+HLL++G DLRSIQ +LGH  LSTTQIYT++  +   
Sbjct: 228 VYVCAVGLDSNKISPHTLRHAFASHLLAHGADLRSIQMLLGHSDLSTTQIYTHIADQR-- 285

Query: 308 DWMMEIYDQTHPSI 321
             +  ++ + HP  
Sbjct: 286 --LKSLFMKHHPRA 297


>gi|323143371|ref|ZP_08078059.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei
           YIT 12066]
 gi|322416889|gb|EFY07535.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei
           YIT 12066]
          Length = 297

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 92/304 (30%), Positives = 148/304 (48%), Gaps = 18/304 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++   L +ERGL   ++ +Y  D  QF  +L     E        + S  +I  F++  +
Sbjct: 10  DFTDYLLLERGLLPKSITAYLSDLHQFFCYLDSVGVEP------AKFSSKDIEGFLASAK 63

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +  RS  R L  +++F  +LK      +  +  + N K   SLP+ ++E      ++
Sbjct: 64  DR-LSARSTARFLCSMRAFSAFLKLENYRDDDPLSLIDNPKLPQSLPKIMSEATVDEFIN 122

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            +   T      +  R+ A+   +Y CGLR+SE ++LT  ++      L I+GKGDK R+
Sbjct: 123 AITTDTD-----VGLRDRAMFETVYSCGLRVSELVNLTFDSLNLVDGYLIIRGKGDKERL 177

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFR-GIRGKPLNPGVFQRYIRQLRRYLGLP 257
           VPL  +    I  Y        +   Q P +F  G    PL+   F   ++     +GL 
Sbjct: 178 VPLGDNAVWWIKRYLAEGRISKDPKNQCPYVFLSGKGVGPLSREGFWYRVKYYASKIGLS 237

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + + HT RH+FATHLL++  DLRS+Q +LGH  L+TTQIYT+V +      M EIY + 
Sbjct: 238 KAPSPHTFRHAFATHLLNHDADLRSVQLLLGHSSLTTTQIYTHVATAR----MHEIYKKA 293

Query: 318 HPSI 321
           H   
Sbjct: 294 HRRA 297


>gi|320532036|ref|ZP_08032926.1| site-specific tyrosine recombinase XerC [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320135749|gb|EFW27807.1| site-specific tyrosine recombinase XerC [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 307

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 83/303 (27%), Positives = 144/303 (47%), Gaps = 7/303 (2%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRAFISKR 78
           ++   L ++R LS  T+++Y  D    L FL    ++   +   +  L   ++R +++  
Sbjct: 11  SYRSYLALQRDLSGHTVRAYLVDVSDLLSFLGVGEKDTEPVDPALATLDLADLRDWLAAM 70

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   +L R  + +++F  +  +  +        +R  +  N LP  L  +QA  L+
Sbjct: 71  AASGHSRATLARRSASVRTFSSWAFEAGLLASDVAARLRAPRVDNRLPGVLTTQQASQLL 130

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                  S   + +  R+ AI+  LY  G+R+SE + L   ++   Q TLR+ GKG K R
Sbjct: 131 KTAADLASDR-QVLAVRDLAIIETLYATGVRVSELIGLDVADLDHSQRTLRVLGKGRKER 189

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            VP      +A+ E+         ++    LF G RG+ ++P   +  + +L     +P 
Sbjct: 190 TVPYGLPAARALEEWLRRRGEICAVDAGGALFLGARGRRIDPRAVRDVVHRLCSAAQVP- 248

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRHS ATH+L  G DLRS+Q +LGH  L+TTQ YT+V+++     +  +Y+Q  
Sbjct: 249 DLGPHGLRHSTATHVLGGGADLRSVQELLGHSSLATTQRYTHVSAER----LRSVYEQAF 304

Query: 319 PSI 321
           P  
Sbjct: 305 PRA 307


>gi|294669162|ref|ZP_06734243.1| tyrosine recombinase XerC [Neisseria elongata subsp. glycolytica
           ATCC 29315]
 gi|291308906|gb|EFE50149.1| tyrosine recombinase XerC [Neisseria elongata subsp. glycolytica
           ATCC 29315]
          Length = 303

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 98/325 (30%), Positives = 154/325 (47%), Gaps = 25/325 (7%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M GN +      EL      +L  L+ + G S+ TL +Y  D  Q    L  + +     
Sbjct: 1   MTGNPM---TPDELPHHLDPYLAELQRQ-GKSEHTLTAYRRDLTQLFNLLPAHGQ----- 51

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
                +   +  A + K   Q   +RSL R LS  + +  +L ++K+      + ++  K
Sbjct: 52  ----SVGRNDFVAVLKKLSQQNQSERSLARKLSAWRQYCAFLMRQKLLDADPTVRLKAPK 107

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LP+A++ +    L+D    H   E   +D R+ AI  LLYG GLR++E   L   +
Sbjct: 108 APERLPKAVDAEPLNRLLD----HAPAENG-LDVRDLAIFELLYGSGLRVAEVHGLNTDD 162

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I+ D+  + ++GKG K R VPL      A+  Y       +  + +  LF G  GK L  
Sbjct: 163 ILLDEGWVEVRGKGGKHRQVPLGSRSVSALRAYLPQR---IAQSGETALFTGHTGKRLGI 219

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              Q  +R      G P   + H +RHS+A+HLL + GD+R+IQ +LGH  LS TQIYT 
Sbjct: 220 RQIQNRLRDWAVKNGSPQHLSPHMMRHSYASHLLQSSGDIRAIQELLGHSNLSATQIYTK 279

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKD 325
           ++     D + ++YD+ HP   +K 
Sbjct: 280 LDF----DRLAQVYDRAHPRAKRKK 300


>gi|221199203|ref|ZP_03572247.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2M]
 gi|221206600|ref|ZP_03579612.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2]
 gi|221173255|gb|EEE05690.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2]
 gi|221180488|gb|EEE12891.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2M]
          Length = 316

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 85/301 (28%), Positives = 137/301 (45%), Gaps = 17/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   L +E GL++ TL +Y  D   F  +LA   +       +     T +  +I+ RR 
Sbjct: 31  FCDALWLEHGLARNTLDAYRRDLTLFSQWLAATHD-----AALDAADETMLTGYIAARRD 85

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            K    S  R LS  + +  +  +    +    L + + K++   P  L+E Q   L+  
Sbjct: 86  GK--ATSSNRRLSVFRRYYGWAVREHRASADPTLRIASAKQAARFPSTLSEAQVEALL-- 141

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                      +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+V
Sbjct: 142 ---GAPDIATPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLV 198

Query: 201 PLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P        I  Y     P  L       LF   RG  +    F   I++  +   +   
Sbjct: 199 PFGEVAHGWIERYLREARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAH 258

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++ Q HP
Sbjct: 259 LSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER----LRTLHAQHHP 314

Query: 320 S 320
            
Sbjct: 315 R 315


>gi|313901986|ref|ZP_07835402.1| integrase family protein [Thermaerobacter subterraneus DSM 13965]
 gi|313467775|gb|EFR63273.1| integrase family protein [Thermaerobacter subterraneus DSM 13965]
          Length = 380

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 86/317 (27%), Positives = 140/317 (44%), Gaps = 20/317 (6%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           S       + +L +L +ERGLS  T+++Y  D   +L FL    E  +    +  +S  +
Sbjct: 19  SLPAADVVEAYLDHLRLERGLSPRTVEAYAGDLAGWLQFLGL--EPPVGAAALAGVSGRD 76

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +R +++    + +   S+ R L+ ++   +Y  +      S    +   +    LPR   
Sbjct: 77  LRRWLAHLEERGLARASVARKLAAVRGLFRYAVREGWLAASPAARLATPRLRRRLPRVYT 136

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
                     +L   +        R+ AIL LLYGCGLR++E   L   ++  +   LR+
Sbjct: 137 P----EEAQALLEAAASGHGPAALRDRAILELLYGCGLRVAELSGLDLDDVDLEGGWLRV 192

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYD---------LCPFDLNLNIQLPLFRGIRGKPLNPG 241
            GKG K RI+PL   V  A+  Y +                      +F    G  L+P 
Sbjct: 193 YGKGGKERILPLAGPVAAALRAYLEEGRPGFLEGRRHRPCRPADAQAVFLNRWGGRLSPR 252

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             Q  +R++   +   L    H LRH+FATHLL  G  LR++Q +LGH  L+ TQ+YT+V
Sbjct: 253 GIQAIVRRVGAVVA-RLQAHPHLLRHTFATHLLDGGAGLRAVQELLGHASLAATQVYTHV 311

Query: 302 NSKNGGDWMMEIYDQTH 318
           +       +  +Y Q H
Sbjct: 312 SRAR----LWAVYQQAH 324


>gi|167644692|ref|YP_001682355.1| integrase family protein [Caulobacter sp. K31]
 gi|167347122|gb|ABZ69857.1| integrase family protein [Caulobacter sp. K31]
          Length = 308

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 85/323 (26%), Positives = 140/323 (43%), Gaps = 24/323 (7%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S         +L+ + +ER  ++ TL +YE D     +FLA           +   S  
Sbjct: 1   MSASASGWIDAFLEMMAVERAAARNTLTAYEKDLADARLFLASRG-------DLDGASAE 53

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            I A+ +    + +   +  R  S ++ F +++       +     +   K    LP+ L
Sbjct: 54  AIEAYFADLGARGLSPATAARRRSALRQFYRFVLGEGWRDDDPSRRVEAPKAGRPLPKVL 113

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +    L L+       + +      R + ++ LLY  GLRISE L+L    +  D + L 
Sbjct: 114 SRDAVLRLI----AAAAAKDGAQGLRLACMIELLYASGLRISELLNLPLAALARDPAFLM 169

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-------NLNIQLPLFRGI-RGKPLNPG 241
           ++GKG K R+ PL  + R A+  Y +  P  L        +     LF    +   L   
Sbjct: 170 VKGKGGKERLAPLNDAARTAVKAYLEARPQFLPKGAPNGGVKDSPWLFPSRAKSGRLTAR 229

Query: 242 VFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              + +       G+   + + H LRH+FATHLL  G DLR IQ++LGH  ++TTQIYT+
Sbjct: 230 RVSQLLEDAAIAAGIDRQTVSPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTH 289

Query: 301 VNSKNGGDWMMEIYDQTHPSITQ 323
           V     GD + E+    HP   +
Sbjct: 290 V----AGDHLAEVVKSKHPLGRK 308


>gi|53715486|ref|YP_101478.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60683459|ref|YP_213603.1| putative site-specific recombinase [Bacteroides fragilis NCTC 9343]
 gi|265767527|ref|ZP_06095193.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_16]
 gi|52218351|dbj|BAD50944.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60494893|emb|CAH09700.1| putative site-specific recombinase [Bacteroides fragilis NCTC 9343]
 gi|263252832|gb|EEZ24344.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_16]
 gi|301164943|emb|CBW24504.1| putative site-specific recombinase [Bacteroides fragilis 638R]
          Length = 293

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 76/303 (25%), Positives = 140/303 (46%), Gaps = 13/303 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L  L  ER  S+ T+ +Y  D  Q   F     E+        ++    +R +I   
Sbjct: 4   DSFLDYLRYERNYSEKTVLAYGEDISQLREFAQERMEKF----DPAEVKPELVREWIVSL 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S+ R LS ++SF KYL ++   +   +  +   K    LP  L E +   L+
Sbjct: 60  MDQGYTSTSVNRKLSSLRSFYKYLLRQGEVSVDPLRKITGPKNKKPLPSFLKESEMNKLL 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D     T     +   R+  I+ + Y  G+R+SE + L  +++    S L++ GK +K R
Sbjct: 120 D----DTDFGEGFKGCRDRLIIEMFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQR 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++P    +++ +LEY D+    ++       F    G+ L   +    +++    +    
Sbjct: 176 LIPFGDELKETMLEYVDIRNEMISGR-SDAFFVRENGERLYKNLVYNLVKRNLSKVVTLK 234

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FAT +L+N  +L +++ +LGH  L+TT+IYT+   +     + ++Y Q H
Sbjct: 235 KRSPHVLRHTFATTMLNNDAELGAVKELLGHSSLATTEIYTHTTFEE----LKKVYKQAH 290

Query: 319 PSI 321
           P  
Sbjct: 291 PRA 293


>gi|312891380|ref|ZP_07750897.1| tyrosine recombinase XerD [Mucilaginibacter paludis DSM 18603]
 gi|311296074|gb|EFQ73226.1| tyrosine recombinase XerD [Mucilaginibacter paludis DSM 18603]
          Length = 299

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 85/307 (27%), Positives = 149/307 (48%), Gaps = 15/307 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K ++ +   L +E+ LS  ++ +Y  D  + + F     + K+       +   ++R FI
Sbjct: 5   KAKKGFSSYLRLEKSLSANSVGAYLGDLDKLIQF----ADSKLIKLYPDTIGMNDLREFI 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                  +   S  R +SGIK+F KYL      +      +   K    LP  L+     
Sbjct: 61  MWVNELGMIPSSQARIISGIKAFYKYLLMDNQLSYDPSELLEAPKLMRKLPDTLSIVDID 120

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+D + L     +K    RN  ++ +LYGCGLR++E ++L   N+  D   +++ GKG+
Sbjct: 121 KLIDAIDL-----SKPEGMRNKTMIEVLYGCGLRVTELVNLRISNLYLDIEFIKVLGKGN 175

Query: 196 KIRIVPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R+VP+     K +  +         + +  +  +F   RG  L+       I++L   
Sbjct: 176 KERLVPIGAQAIKFLKIWLQEVRVHTPVKMGEEDIVFLNRRGNRLSRVYVFMMIKELAEK 235

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +GL  S + HT RHSFATHL+  G DLR++Q +LGH  ++TT+IYT+++     +++  +
Sbjct: 236 IGLKKSISPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLD----REYLKGV 291

Query: 314 YDQTHPS 320
             + HP 
Sbjct: 292 IIEHHPR 298


>gi|45657471|ref|YP_001557.1| putative integrase/recombinase protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|45600710|gb|AAS70194.1| putative integrase/recombinase protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 332

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 80/318 (25%), Positives = 153/318 (48%), Gaps = 14/318 (4%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
            PE  S  L +  + ++  L+IE+  S+ T+ +Y  D + F  F     +E++ I  I  
Sbjct: 29  FPEFSSESLNETAKKFINYLKIEKNYSQNTINAYSIDLKFFFEFCE---KEQLDIFQIEP 85

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +      A+++K+    I  RS  R LS +++F K L +  +   +    +   K    +
Sbjct: 86  VDIRSYFAYLAKKHE--IDRRSQSRKLSSLRTFYKVLLREDLVKSNPATQLSFPKVRKEV 143

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P+     +   +++     + + ++  + R+ A++ +LY  GLR+ E ++    ++  D 
Sbjct: 144 PKNFRINETEEILE---FESENASEVSEIRDRAMIEVLYSSGLRVFELVNAKLNSLSKDL 200

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
           + L++ GKG K R V        ++ +Y +          +  +F   RGK L     + 
Sbjct: 201 TVLKVLGKGRKERFVYFGKEAVSSLQKYLEYRNVSFPDAEE--IFLNQRGKKLTTRGVRY 258

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            + + R+ +G   + T H  RH+FAT LL  G ++R++Q +LGH  LSTTQIY +V+ + 
Sbjct: 259 ILNERRKKMGWEKTITPHKFRHTFATDLLDAGAEIRAVQELLGHSSLSTTQIYLSVSKE- 317

Query: 306 GGDWMMEIYDQTHPSITQ 323
               + E+Y + HP   +
Sbjct: 318 ---KIKEVYRKAHPHARK 332


>gi|145295931|ref|YP_001138752.1| site-specific tyrosine recombinase XerC [Corynebacterium glutamicum
           R]
 gi|140845851|dbj|BAF54850.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 315

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 88/312 (28%), Positives = 153/312 (49%), Gaps = 21/312 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
              +L     ++ ++L++  G S  T++ Y  D                TI+ I   S  
Sbjct: 25  APSKLHTLIDDFCEHLDLVVGRSAATIRGYRSDLYAMAD----------TIEDIDNFSLP 74

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R ++     +     +L R  + +K+F  + +K           + + K +  LP+ L
Sbjct: 75  TLRQWLGIAVDEGKSRATLARRTASVKAFSSWAQKNGHLKADEAARLISPKITRDLPKIL 134

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            E+QA   V+N     +   +    R+SAIL LLY  G+R++E   +   +I  D+  +R
Sbjct: 135 GEQQAGDFVEN----AASTNEEEFLRDSAILELLYATGMRVAELCGIDLPDIDYDRKMVR 190

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG+K R+VP   S  KA+  + D+   D        LF G+RG+ +N    +R + +
Sbjct: 191 VLGKGNKERVVPFGESAHKALRNWLDVR--DEMAEDPKALFVGVRGQRINARQVRRIVDR 248

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           + +  G+    + H+LRH+ ATHLL  G DLR +Q +LGH  + TTQIYT+V++K     
Sbjct: 249 VAKVTGVD-HLSPHSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNKR---- 303

Query: 310 MMEIYDQTHPSI 321
           ++E +++ HP  
Sbjct: 304 LLEAFNKAHPRA 315


>gi|89901430|ref|YP_523901.1| tyrosine recombinase XerD [Rhodoferax ferrireducens T118]
 gi|89346167|gb|ABD70370.1| tyrosine recombinase XerD subunit [Rhodoferax ferrireducens T118]
          Length = 306

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 146/308 (47%), Gaps = 21/308 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              ++  L +E GLSK TL +Y  D   +  +L    + K    T+      ++  + + 
Sbjct: 14  IDAFIDALWLEEGLSKNTLAAYRRDLTLYGAWLQ--PQHKALPATLEH----DLNGYFAA 67

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           + +      +  R L+  K + ++  +  + +    L ++  K++  +P+ L+E Q   L
Sbjct: 68  QHSAT-KASTANRRLTVFKRYFRWALREHLISADPTLKLQAAKQALRVPKTLSEFQVEAL 126

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +         E   +  R+  +L L+Y  GLR+SE ++L   N+    + LR+ GKG+K 
Sbjct: 127 L-----AAPDEQTPLGVRDRTMLELMYASGLRVSELVTLKVFNVSLSDNVLRVFGKGNKE 181

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRG----KPLNPGVFQRYIRQLRR 252
           R+VP        I  Y      +L    Q   LF   RG      ++  +F   +++   
Sbjct: 182 RLVPFGEVASLWIKRYLAQARPELLAGKQTEDLFVTHRGATPGTAMSRVMFWMIVKKYAL 241

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    + HTLRH+FATHLL++G DLR++Q +LGH  +STT IYT+V  +     +  
Sbjct: 242 SAGITAPLSPHTLRHAFATHLLNHGVDLRAVQMLLGHVDISTTTIYTHVARER----LKV 297

Query: 313 IYDQTHPS 320
           ++ Q HP 
Sbjct: 298 LHAQHHPR 305


>gi|85702955|ref|ZP_01034059.1| tyrosine recombinase XerD [Roseovarius sp. 217]
 gi|85671883|gb|EAQ26740.1| tyrosine recombinase XerD [Roseovarius sp. 217]
          Length = 323

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 86/315 (27%), Positives = 148/315 (46%), Gaps = 20/315 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+    E G +K TL +Y  D R F  ++ +         ++  L   +I +++ +   
Sbjct: 11  FLEAQAAELGAAKNTLMAYARDLRDFTDWVKYQN------LSLDNLMQPDIESYLVQCDA 64

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q +   +  R LS I+   ++  + ++  ++  + ++   K+  LP+ L E +   L++ 
Sbjct: 65  QGLAPATRARRLSAIRQLYRFAFEERLRADNPAIRIKGPGKAQRLPKTLTEDEVGRLLEV 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
              H    T+    RN+ ++ LLY  G+R+SE +SL       D   L ++GKG K R+V
Sbjct: 125 APQHGRTATERC--RNACLMALLYATGMRVSELVSLPLAAARGDPQMLLVRGKGGKERMV 182

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-------LNPGVFQRYIRQLRRY 253
           PL P  R A++++  L   +        L               L    F   I++    
Sbjct: 183 PLSPPARTALVDWLALRDAEETARRSKGLAPSPFLFASGGTAGYLTRHRFYNLIKEFAVK 242

Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             + P   T HTLRH+FATHLL+NG DLR IQ++LGH  ++TT+IYT+V        +  
Sbjct: 243 AHVDPEKVTPHTLRHAFATHLLANGADLRVIQTLLGHADIATTEIYTHVLEAR----LQA 298

Query: 313 IYDQTHPSITQKDKK 327
           +  + HP      +K
Sbjct: 299 LVQEHHPLAQAARRK 313


>gi|262037917|ref|ZP_06011342.1| tyrosine recombinase XerC [Leptotrichia goodfellowii F0264]
 gi|261748060|gb|EEY35474.1| tyrosine recombinase XerC [Leptotrichia goodfellowii F0264]
          Length = 315

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 91/315 (28%), Positives = 150/315 (47%), Gaps = 22/315 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L   E+  G S  T++SY+ D  QF+ +L  Y E    I     +     R+FI+ 
Sbjct: 14  VDKFLYYEEVITGKSYNTIKSYKKDIMQFIDYLNEYEE----IDEFENVETITFRSFIAY 69

Query: 78  RRTQK---------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +           +  RS+ R +S +++F KYL+++KI   + +  +   K    LP  
Sbjct: 70  LNSTSKENNDERKVVSKRSINRKISALRTFFKYLQEKKIVKTNKVNYITMPKFEKELPNV 129

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L  +    L D V     + +K    R+  I+ LLY  G+R SE + L    I  ++  L
Sbjct: 130 LGREDINKLRDAV-----NTSKITGIRDRLIIELLYSSGIRASELIDLNEYMINIEEREL 184

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R+ GKG+K RI     + +K + +Y +      +   +  +F   +G+ L     +R I 
Sbjct: 185 RVIGKGNKERITFFSENSKKWLEKYIEEKKEKYSNYTKDVVFANSKGEKLTTRSLRRLIA 244

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
              +  GL    T H  RH+FAT LL+NG D+R +Q +LGH  +STTQ+YT+V+      
Sbjct: 245 DYAKKAGLQKEVTPHVFRHTFATELLNNGVDIRYLQELLGHSSISTTQVYTHVS----KA 300

Query: 309 WMMEIYDQTHPSITQ 323
            + ++Y  THP   +
Sbjct: 301 LLKDVYMNTHPLARE 315


>gi|256827139|ref|YP_003151098.1| site-specific recombinase XerD [Cryptobacterium curtum DSM 15641]
 gi|256583282|gb|ACU94416.1| site-specific recombinase XerD [Cryptobacterium curtum DSM 15641]
          Length = 315

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 91/327 (27%), Positives = 146/327 (44%), Gaps = 18/327 (5%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M   +  E  S ELL  R  +L+ L      S  T+++Y  D   +L F        +  
Sbjct: 1   MTTKHQTESHSAELLVAR--YLEELTSTGRASAHTIRNYGNDLADWLRFAERSNINALEP 58

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
                 S+ +IR ++      +    ++ R LS ++ F ++ +   +   +    + +LK
Sbjct: 59  ------SHRDIRLYLVDLDAARYAKATINRRLSSLRGFFRWGQIAGLFEHNPAEAVSSLK 112

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETK----WIDARNSAILYLLYGCGLRISEALSL 176
           +   LP  +     + ++                 I  R+ A+L  LY CG RISEA +L
Sbjct: 113 EGKHLPHRIPPSDMVRILRVNGPRDEQGKTRLQTPIQMRDQAVLEFLYACGARISEAAAL 172

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIR 234
           T   +  D+ T R+ GKG K R+V L     +++  Y      DL      P   F   R
Sbjct: 173 TVDAVDLDRGTARLFGKGSKERVVYLHALAIESMGAYLHFARNDLLRGRTDPGYFFLSTR 232

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G P+N    ++  +      G+  + T H +RH+FA+ LL  G DLRS+Q +LGH  LST
Sbjct: 233 GLPMNTDAIRKMFKTTLIQAGVRAAYTPHDMRHTFASDLLEGGADLRSVQELLGHSSLST 292

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           TQIYT+V+       M +++ Q HP  
Sbjct: 293 TQIYTHVSIAQ----MRKVHKQAHPRA 315


>gi|167585653|ref|ZP_02378041.1| site-specific tyrosine recombinase XerD [Burkholderia ubonensis Bu]
          Length = 315

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 84/301 (27%), Positives = 136/301 (45%), Gaps = 17/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   L +E GL++ TL +Y  D   F  +LA   +      ++       +  +I+ R  
Sbjct: 30  FCDALWLEHGLARNTLDAYRRDLALFAQWLAATHD-----ASLDVADEMMVTGYIAARSD 84

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            K    S  R LS  + +  +  +    +    L + + K++   P  L+E Q   L+  
Sbjct: 85  GK--ATSSNRRLSVFRRYYGWAVREHRASADPTLRITSAKQAARFPSTLSEAQVEALL-- 140

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                      +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+V
Sbjct: 141 ---GAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLV 197

Query: 201 PLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P        I  Y     P  L       LF   RG  +    F   I++  R   +   
Sbjct: 198 PFGEVAHGWIERYLRHARPALLGARAADALFVTARGDGMTRQQFWNIIKRHARQADVRAH 257

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++ Q HP
Sbjct: 258 LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARER----LRTLHAQHHP 313

Query: 320 S 320
            
Sbjct: 314 R 314


>gi|78187478|ref|YP_375521.1| phage/XerD family site-specific recombinase [Chlorobium luteolum
           DSM 273]
 gi|78167380|gb|ABB24478.1| site-specific recombinase, phage/XerD family [Chlorobium luteolum
           DSM 273]
          Length = 341

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 98/322 (30%), Positives = 162/322 (50%), Gaps = 22/322 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + +L +   ++ LS  T+ +Y  D RQF  FLA ++        +  ++ + +R F+
Sbjct: 26  RLIEEFLLSGRGQKNLSGTTIVAYRTDLRQFFGFLARHSGS--GEFDLSLVTPSLVRMFM 83

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                + +  RS+ R L+ +KSF ++L + +  TES +  +   + S  +P  L E +A 
Sbjct: 84  GDLLRRGLQQRSIARKLASLKSFFRFLHESRHLTESALSAVSMPRYSRPIPSFLTEPEAS 143

Query: 136 TLVDNVLLHTSHETKWIDAR----------NSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
            L ++V+    H   +   R          ++AIL +LYGCGLRISE   L   ++    
Sbjct: 144 MLFEDVVPMAPHREGFAHGRELQRNFTLLRDAAILEMLYGCGLRISELTGLRQSDLEMVG 203

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLC------PFDLNLNIQLPLFRGIRGKPLN 239
             +++ GKG K RIVPL      A+ +Y+++         D  L     +F   +GK + 
Sbjct: 204 GFVKLTGKGRKQRIVPLGAPAVSALKKYFEVRLNFFRISVDGALGESDFVFLTNKGKQIY 263

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           P + QR  R+    +        HTLRH+FATHLL+ G DL+S+  +LGH  LSTT+IYT
Sbjct: 264 PMLVQRMTRRYLAAVTEQKKKNPHTLRHTFATHLLNGGADLQSVSEMLGHSNLSTTEIYT 323

Query: 300 NVNSKNGGDWMMEIYDQTHPSI 321
           +V  +     + E+Y + HP  
Sbjct: 324 HVTFER----LREVYRKAHPKA 341


>gi|313887306|ref|ZP_07820997.1| phage integrase, N-terminal SAM domain protein [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332299242|ref|YP_004441163.1| Tyrosine recombinase xerC [Porphyromonas asaccharolytica DSM 20707]
 gi|312923225|gb|EFR34043.1| phage integrase, N-terminal SAM domain protein [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332176305|gb|AEE11995.1| Tyrosine recombinase xerC [Porphyromonas asaccharolytica DSM 20707]
          Length = 314

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 86/310 (27%), Positives = 143/310 (46%), Gaps = 16/310 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +   L +E+ LS  ++ SY  D  +   ++           ++R++    +  F +   
Sbjct: 12  RYKTYLRLEQHLSDNSIDSYLYDVDKLYTYIEDMG------LSLREVELQHLNNFAAHLL 65

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              I  RSL R LSG+KSF ++L   +         ++       LP  L   +  +L+ 
Sbjct: 66  DLGISMRSLARVLSGVKSFFRFLTLEEEIERDPTDMLQTPPIHKKLPEVLTLAEIDSLL- 124

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                   E +   +R++AI+ +LY CGLR+SE   LT  ++  D+  L + GKG K R+
Sbjct: 125 ----GAIDEDRIEASRDTAIIEVLYSCGLRVSELCGLTYSDVFLDEGYLHVWGKGRKERL 180

Query: 200 VPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+ P     +  Y +    ++        LF   RG+P++       IR L    G+  
Sbjct: 181 VPMSPKAVADVQRYLNDPYRYNAKPEYDQYLFISRRGQPISRITVFCLIRTLAEQAGIQK 240

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HTLRHSFATHLL  G DL +IQ ++GH  ++TT++YT+V+       +     + H
Sbjct: 241 EISPHTLRHSFATHLLEGGADLHAIQLMMGHESIATTEVYTHVD----RSALRADILRYH 296

Query: 319 PSITQKDKKN 328
           P   Q    +
Sbjct: 297 PRNQQHPTSH 306


>gi|260433976|ref|ZP_05787947.1| tyrosine recombinase XerD [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417804|gb|EEX11063.1| tyrosine recombinase XerD [Silicibacter lacuscaerulensis ITI-1157]
          Length = 316

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 90/332 (27%), Positives = 145/332 (43%), Gaps = 27/332 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M G   PE+           +L+    E G +  TL +Y  D + F  +L+ +       
Sbjct: 1   MPGPETPEL-------WISAFLEAQAAELGAATNTLLAYGRDLKDFAGWLSRHG------ 47

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
               Q     I A++     Q +   +  R LS IK   ++  +      +  + ++   
Sbjct: 48  AGFAQADQARIEAYLIDCDAQGLSRATRARRLSAIKQLYRFAFEEGWRDTNPAIQIKGPG 107

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +   LP+ L+  +   L+       +  T+    RN+ ++ LLY  G+R++E +SL    
Sbjct: 108 RQKRLPKTLDVAEVDRLLQA--ARQTGRTQADRLRNTCLMELLYATGMRVTELVSLPVSA 165

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF------DLNLNIQLPLFRGI- 233
              D   L + GKG K R+VPL P  R A+  +                     LF    
Sbjct: 166 ARGDPRMLLVLGKGGKERMVPLSPPARDALAAWLGARDAVEEASVAKGGQRSRFLFPSRG 225

Query: 234 RGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +   L    F   +++L    G+ P   T HTLRH+FATHLL+NG DLRSIQ++LGH  +
Sbjct: 226 KSGHLTRHRFFLLVKELAVCGGVSPEKVTPHTLRHAFATHLLANGADLRSIQTLLGHADV 285

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           +TT+IYT+V  +     + E+  Q HP    +
Sbjct: 286 ATTEIYTHVLDER----LSELVLQHHPLARDE 313


>gi|116254087|ref|YP_769925.1| site-specific tyrosine recombinase XerD [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115258735|emb|CAK09841.1| putative tyrosine recombinase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 317

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 92/318 (28%), Positives = 147/318 (46%), Gaps = 18/318 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             +++L+ +  ERG +  TLQSYE D      FL   +        + + + T++ A++S
Sbjct: 8   HVESFLEMMSAERGAAANTLQSYERDLDDVRSFLTERSIR------LTEAASTDLAAYLS 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               +     S  R L+ ++ F K+L    +  +     +   KK   LP+ +  ++   
Sbjct: 62  SLARKGFKPSSQARRLAAMRQFYKFLYAEGLRADDPTGILDAPKKGRPLPKTMGVEEVGR 121

Query: 137 LVDNVLLHTSHETK--WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           L+                  R  A+L LLY  G+R+SE +SL  + +  +   L I+GKG
Sbjct: 122 LLSRAEAEAEDPAPGQLQRLRMLALLELLYATGMRVSELVSLPARVLDQEGRFLMIRGKG 181

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFD----LNLNIQLPLFRG-IRGKPLNPGVFQRYIRQ 249
           +K R+VPL  S   A+  Y  L   +            LF    +   L   VF R ++ 
Sbjct: 182 NKERLVPLSQSAISALKSYGRLLAVENAAVKEPQESPWLFPSASKEGYLPRQVFARDLKN 241

Query: 250 LRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           L    GL  S  + H +RH+FA+HLL+NG DLR +Q +LGH  +STTQIYT+V  +    
Sbjct: 242 LAIRAGLTPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER--- 298

Query: 309 WMMEIYDQTHPSITQKDK 326
            + ++    HP   Q  K
Sbjct: 299 -LQQLVQTHHPLAKQAKK 315


>gi|311064016|ref|YP_003970741.1| integrase/recombinase [Bifidobacterium bifidum PRL2010]
 gi|310866335|gb|ADP35704.1| Integrase/recombinase [Bifidobacterium bifidum PRL2010]
          Length = 334

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 91/337 (27%), Positives = 149/337 (44%), Gaps = 46/337 (13%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L   RGLS  T+++Y  D R+ L  LA        I  +RQ++  ++R +++   
Sbjct: 9   AFLAYLRANRGLSDNTVKAYGTDVRECLHALASR-----GIADLRQVTTDDLRGWMAF-E 62

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           T+     S+ R +  ++SF  +  +           +   K  ++LP  L E QA  L+D
Sbjct: 63  TRDHARSSMARKVVSVRSFFAWAHEHGRIEADPAAVLMTPKLPDTLPSVLTEAQAERLMD 122

Query: 140 NVLLHTS-----------------------------HETKWIDARNSAILYLLYGCGLRI 170
            V    S                                + +  R++A+L LLY  G+R+
Sbjct: 123 RVDDDASLHAASSQRYETRHDEMPRLDSAHRGEGMSQRDEVVALRDAAMLELLYATGIRV 182

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY------YDLCPFDLNLN 224
           +E + L   ++     T+R+ GKG K R+VP      KA+  +        L        
Sbjct: 183 AELVGLDIGDVDWSHRTIRVTGKGSKQRVVPFGDPAEKALAGWKEHGRPLILRRAGAGTL 242

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
               LF G+RG+ ++  + +  + +  R  G+P   + H+LRHS ATH+L  G DLR +Q
Sbjct: 243 DTAALFLGMRGRRIDQRIVRDVVHRAARESGVP-DISPHSLRHSAATHMLDGGADLREVQ 301

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            +LGH  L TTQ YT+V+ +     + E Y Q  P  
Sbjct: 302 EMLGHSSLRTTQRYTHVSIEQ----LKERYRQAFPRA 334


>gi|253681771|ref|ZP_04862568.1| tyrosine recombinase XerD [Clostridium botulinum D str. 1873]
 gi|253561483|gb|EES90935.1| tyrosine recombinase XerD [Clostridium botulinum D str. 1873]
          Length = 292

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 81/302 (26%), Positives = 157/302 (51%), Gaps = 16/302 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +++++ +++ LSK T+++Y+ D  +F  FL    E       I +     I A++   +
Sbjct: 7   KYIEDM-LKKELSKNTIEAYKRDLLKFAKFLNKRHE------NILESDMVSIMAYVQILK 59

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            ++  D S+ RSL  I++F K+L K     ++ ++N    K   +LP  L   +    + 
Sbjct: 60  KERKADSSIIRSLVAIRNFYKFLIKTGENVDNPLINYEVPKNKRTLPEILTVDEVDKFL- 118

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                    +++   R+ A+L L+Y  G+++SE L +T  ++    S ++ +G  DK RI
Sbjct: 119 ----SAPDCSEYKGIRDKAMLELMYATGMKVSELLKITIFDVNLKLSYIKCKGAKDKERI 174

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +P+       + EY  +    +N +    LF  +RG  +    F + +++  +   +   
Sbjct: 175 IPIGSYAVNCLNEYLKVRD-KMNADNSELLFCNLRGGKMTRQGFWKIVKKYAKDANINKK 233

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
             ++TLRHSFA HLL NG D++S+Q +LGH  ++TTQIY++++ KN    ++++Y + HP
Sbjct: 234 IDSYTLRHSFAVHLLQNGADMKSVQELLGHNTIATTQIYSSISKKN---KIVDVYKKAHP 290

Query: 320 SI 321
             
Sbjct: 291 RA 292


>gi|170724856|ref|YP_001758882.1| tyrosine recombinase XerC [Shewanella woodyi ATCC 51908]
 gi|169810203|gb|ACA84787.1| tyrosine recombinase XerC [Shewanella woodyi ATCC 51908]
          Length = 299

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 84/310 (27%), Positives = 150/310 (48%), Gaps = 19/310 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q++   L  ER LSK T+++Y  +  +    L   T       +   +S  +I++ +S+
Sbjct: 6   FQHFESYLSAERQLSKHTVRNYLFELNRVDQLLDDST-------SWLSVSREQIQSAMSQ 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + +  RSL  +LS +K F ++L +  +   +  +N+   K++  LP+ ++      L
Sbjct: 59  LHRRGLSPRSLSLTLSAVKQFCEFLLREGVIQTNPAINLSAPKQNKPLPKNMDPDSVSHL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++            +  R+ AI+ L Y  GLR++E  +L   +I   +  +++ GKG K 
Sbjct: 119 LEI------DGDDPLSLRDKAIMELFYSSGLRLAELAALNISDIQFSERLVKVLGKGGKE 172

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RI+P+      AI ++       L       LF   +G  L     Q  + +  +   L 
Sbjct: 173 RILPIGKMAISAIDKWL--ACRRLIPCEHDALFITNKGTRLAHRSIQARLSKWGQEQALN 230

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           +    H LRHSFATH+L +  DLR++Q +LGH  LSTTQIYT+++ ++    + ++YD  
Sbjct: 231 MRVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQIYTSLDFQH----LAKVYDGA 286

Query: 318 HPSITQKDKK 327
           HP   +  K 
Sbjct: 287 HPRAAKAKKD 296


>gi|294828085|ref|NP_712528.2| integrase/recombinase XerD [Leptospira interrogans serovar Lai str.
           56601]
 gi|302393797|sp|Q7ZAM8|XERC_LEPIN RecName: Full=Tyrosine recombinase xerC
 gi|302393800|sp|Q72RY9|XERC_LEPIC RecName: Full=Tyrosine recombinase xerC
 gi|293385933|gb|AAN49546.2| integrase/recombinase XerD [Leptospira interrogans serovar Lai str.
           56601]
          Length = 311

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 80/318 (25%), Positives = 153/318 (48%), Gaps = 14/318 (4%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
            PE  S  L +  + ++  L+IE+  S+ T+ +Y  D + F  F     +E++ I  I  
Sbjct: 8   FPEFSSESLNETAKKFINYLKIEKNYSQNTINAYSIDLKFFFEFCE---KEQLDIFQIEP 64

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +      A+++K+    I  RS  R LS +++F K L +  +   +    +   K    +
Sbjct: 65  VDIRSYFAYLAKKHE--IDRRSQSRKLSSLRTFYKVLLREDLVKSNPATQLSFPKVRKEV 122

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P+     +   +++     + + ++  + R+ A++ +LY  GLR+ E ++    ++  D 
Sbjct: 123 PKNFRINETEEILE---FESENASEVSEIRDRAMIEVLYSSGLRVFELVNAKLNSLSKDL 179

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
           + L++ GKG K R V        ++ +Y +          +  +F   RGK L     + 
Sbjct: 180 TVLKVLGKGRKERFVYFGKEAVSSLQKYLEYRNVSFPDAEE--IFLNQRGKKLTTRGVRY 237

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            + + R+ +G   + T H  RH+FAT LL  G ++R++Q +LGH  LSTTQIY +V+ + 
Sbjct: 238 ILNERRKKMGWEKTITPHKFRHTFATDLLDAGAEIRAVQELLGHSSLSTTQIYLSVSKE- 296

Query: 306 GGDWMMEIYDQTHPSITQ 323
               + E+Y + HP   +
Sbjct: 297 ---KIKEVYRKAHPHARK 311


>gi|262278120|ref|ZP_06055905.1| site-specific recombinase XerC [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258471|gb|EEY77204.1| site-specific recombinase XerC [Acinetobacter calcoaceticus
           RUH2202]
          Length = 310

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 167/307 (54%), Gaps = 14/307 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+  +I+   S+ T+ +YE D + FL F             +R +  +++R ++++R  
Sbjct: 15  WLKERKIQNQ-SEHTITAYERDVKSFLEFCDLKQI------DLRNVEASDLREYLAQRVE 67

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           Q ++   S++R L+ I+ F+K+ ++ K    +   + +  ++   LP  ++ +    ++D
Sbjct: 68  QDQLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILD 127

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             +     + + +  R+ A+L LLY  GLR++E   LT ++I  ++  +RI GKG+K RI
Sbjct: 128 QPMPEKPVDQQ-LWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRI 186

Query: 200 VPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP     ++++L +  +   +  + +    +F   RG  L P   ++ ++   +  G+ +
Sbjct: 187 VPFGKKAKESLLNWLKIYKIWKGHFDQNAFVFISQRGGVLTPRQIEKRVKLQAQRAGVNV 246

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRH FA+H+LS+ GDLRS+Q +LGH  LSTTQIYT+++     D + ++YD+ H
Sbjct: 247 DLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHLAQVYDRAH 302

Query: 319 PSITQKD 325
           P   + +
Sbjct: 303 PRAQKNE 309


>gi|118594103|ref|ZP_01551450.1| Tyrosine recombinase XerC [Methylophilales bacterium HTCC2181]
 gi|118439881|gb|EAV46508.1| Tyrosine recombinase XerC [Methylophilales bacterium HTCC2181]
          Length = 300

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 89/310 (28%), Positives = 156/310 (50%), Gaps = 19/310 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   ++ E+ LS LT++SY  D R          + ++  + ++     +IR  IS 
Sbjct: 7   IEKYTDYIKFEKRLSALTIKSYLRDIRLL--------DSELQGKDLQSYQVDDIRRGISV 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + I  +SL R LS  + F  +L  R   + + ++ ++  K    LP+ L+   A+ L
Sbjct: 59  FHAKGINGKSLSRMLSSWRGFFDFLNHRYEFSLNPVMGIKAPKAKKLLPQTLSIDHAIKL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           V         +  ++  R+ AI+ L Y  GLR+SE  ++   +I  D+ T  I GKG+K 
Sbjct: 119 VSIT------DKSFLGLRDRAIMELFYSSGLRLSELAAMKLADINMDEQTASILGKGNKS 172

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVP+     +A+ ++  +     + N +   LF   +G  L     Q  ++      G+
Sbjct: 173 RIVPIGSHALQALNDWIVMRKKISDFNPRTTHLFLSEKGNALGVRSIQYRLKFWAIKQGI 232

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           P +   H LRHSFA+HLL +  DLR++Q +LGH  +STTQIYT+++ ++    + +IYD 
Sbjct: 233 PENIHPHLLRHSFASHLLQSSQDLRAVQELLGHANISTTQIYTHLDYQH----LSKIYDD 288

Query: 317 THPSITQKDK 326
            HP   + ++
Sbjct: 289 AHPRAKKNNR 298


>gi|15617948|ref|NP_224232.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae
           CWL029]
 gi|15835561|ref|NP_300085.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae
           J138]
 gi|16753021|ref|NP_445294.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae
           AR39]
 gi|33241363|ref|NP_876304.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae
           TW-183]
 gi|34223089|sp|Q9Z9F7|XERC_CHLPN RecName: Full=Tyrosine recombinase xerC
 gi|4376276|gb|AAD18177.1| Integrase/recombinase [Chlamydophila pneumoniae CWL029]
 gi|8163493|gb|AAF73701.1| integrase/recombinase, phage integrase family [Chlamydophila
           pneumoniae AR39]
 gi|8978399|dbj|BAA98236.1| integrase/recombinase [Chlamydophila pneumoniae J138]
 gi|33235871|gb|AAP97961.1| site-specific integrase/recombinase [Chlamydophila pneumoniae
           TW-183]
          Length = 312

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 86/321 (26%), Positives = 144/321 (44%), Gaps = 22/321 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT-------------EEKITI 60
           ++    ++L  L++ +  S  TL++Y  D     IFL                 + K++ 
Sbjct: 1   MIASIYSFLDYLKMVKSASPHTLRNYCLDLNGLKIFLEERGNLAPSSPLQLATEKRKVSE 60

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
                 +   +R +I+K        R++KR LS IKSF  Y   +KI  E+    +   +
Sbjct: 61  LPFSLFTKEHVRMYIAKLIENGKAKRTIKRCLSSIKSFAHYCVIQKILLENPAETIHGPR 120

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LP  +   Q   L+      T   +K+   R+  ++ L Y  GLRISE +++  Q+
Sbjct: 121 LPKELPSPMTYAQVEVLM-----ATPDISKYHGLRDRCLMELFYSSGLRISEIVAVNKQD 175

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                  +RI+GKG K RI+P+  +  + I  Y +             +F    G+ ++ 
Sbjct: 176 FDLSTHLIRIRGKGKKERIIPVTSNAIQWIQIYLNHPDRKRLEKDPQAIFLNRFGRRIST 235

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               R  ++  R  GL    T HT+RH+ ATH L +G DL++IQ++LGH  L TT +YT 
Sbjct: 236 RSIDRSFQEYLRRSGLSGHITPHTIRHTIATHWLESGMDLKTIQALLGHSSLETTTVYTQ 295

Query: 301 VNSKNGGDWMMEIYDQTHPSI 321
           V+ K       + + + HP  
Sbjct: 296 VSVKLK----KQTHQEAHPHA 312


>gi|299769077|ref|YP_003731103.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1]
 gi|298699165|gb|ADI89730.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1]
          Length = 310

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 167/307 (54%), Gaps = 14/307 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+  +I+   S+ T+ +YE D + FL F             +R +  +++R ++++R  
Sbjct: 15  WLKERKIQNQ-SEHTITAYERDVKSFLEFCELKQI------DLRNIEASDLREYLAQRVE 67

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           Q ++   S++R L+ I+ F+K+ ++ K    +   + +  ++   LP  ++ +    ++D
Sbjct: 68  QDQLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILD 127

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             +     + + +  R+ A+L LLY  GLR++E   LT ++I  ++  +RI GKG+K RI
Sbjct: 128 QSMPEKPIDQQ-LWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRI 186

Query: 200 VPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP     ++++L +  +   +  + +    +F   RG  L P   ++ ++   +  G+ +
Sbjct: 187 VPFGKKAKESLLNWLKIYKIWKGHFDQNAFVFISQRGGALTPRQIEKRVKLQAQRAGVNV 246

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRH FA+H+LS+ GDLRS+Q +LGH  LSTTQIYT+++     D + ++YD+ H
Sbjct: 247 DLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHLAQVYDRAH 302

Query: 319 PSITQKD 325
           P   + +
Sbjct: 303 PRAQKNE 309


>gi|121611464|ref|YP_999271.1| phage integrase family protein [Verminephrobacter eiseniae EF01-2]
 gi|121556104|gb|ABM60253.1| phage integrase family protein [Verminephrobacter eiseniae EF01-2]
          Length = 378

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 91/324 (28%), Positives = 149/324 (45%), Gaps = 27/324 (8%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           + Q +L++L +E+ L+  +L  Y  D  +   F A  +        + QL+   IR F++
Sbjct: 22  QVQRYLEHLRVEKRLAARSLTLYRLDLEKLARFAAGLS------LPLLQLTDAHIRRFVA 75

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           +  +     R +   LSG + F  +  ++ +   + +L +R  K    LP+AL   QA+ 
Sbjct: 76  QMHSAGRSGRGIALILSGWRGFFIWAGRQGLIGRNPVLGIRAPKSPKPLPKALGVDQAMR 135

Query: 137 LVDNVLLHT--SHETKWIDARNSAILYLLYGCGLRISEALSLT-----------PQNIMD 183
           L D        +    W+  R++A+  LLYG GLR  E   L               +  
Sbjct: 136 LADFDGAAGAATEADIWLQIRDAAMAELLYGSGLRAGELAGLDAVPNADTERQGRGWVDL 195

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC----PFDLNLNIQLPLFRGIRGKPLN 239
               + + GKG K R VP+  +   A+  +  L            +   LF G RG  L 
Sbjct: 196 QAGEVHVLGKGSKRRSVPMGRAASAALRAWLALRAKPFGAAGAARLDAALFVGRRGARLT 255

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                R +RQ  +  GLP     H LRHSFA+HLL + GDLR++Q +LGH  +++TQ+YT
Sbjct: 256 TLSIWRRLRQRSQRAGLPSPVHPHMLRHSFASHLLQSSGDLRAVQELLGHASITSTQVYT 315

Query: 300 NVNSKNGGDWMMEIYDQTHPSITQ 323
            ++ ++    +  +YD THP   +
Sbjct: 316 RLDFQH----LARVYDATHPRAHK 335


>gi|312892234|ref|ZP_07751731.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311295364|gb|EFQ72536.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 322

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 78/315 (24%), Positives = 152/315 (48%), Gaps = 18/315 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-----------KITIQTIRQL 66
            + ++Q L  E+  S  T+ +Y+ D  QF  + A   +            K+ +  I  +
Sbjct: 15  LERFIQYLRYEKRFSSHTITAYQTDLYQFFTYTANSADHNLSPAEAELKVKLALSHIADI 74

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           +Y +IR +I +        +S+ R +S +++F K+  +  I T +    ++  K    LP
Sbjct: 75  TYQDIREWIVQLMNDDQAAKSINRKISCLRTFFKFALREGIITANPASKIQAPKIPKRLP 134

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             + E + ++L+ +       +  +   R+  ++ LL+G G+R++E + L   +I   + 
Sbjct: 135 VVVEEDKIVSLLSS---SQIFDDSFTGLRDKLVIELLFGTGIRLAELVGLKETDIDIYEG 191

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           T+++ GK +K R++P+   ++  ++ Y ++   +   N  L L    +G      +    
Sbjct: 192 TIKVLGKRNKERVIPIHSELKLLLVHYINIKKSENFNNNSLTLIVTSKGANAYSKMVYLI 251

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +++    +      + H LRHSFAT LL++G DL +I+ +LGH  LS TQIYT+    N 
Sbjct: 252 VQKYLSLISTQDKKSPHVLRHSFATSLLNHGADLNAIKELLGHANLSATQIYTH----NS 307

Query: 307 GDWMMEIYDQTHPSI 321
            + +  IY Q HP  
Sbjct: 308 VERLKSIYKQAHPKA 322


>gi|269215605|ref|ZP_06159459.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122]
 gi|269131092|gb|EEZ62167.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122]
          Length = 307

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 86/312 (27%), Positives = 143/312 (45%), Gaps = 15/312 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +    L    ++       RG S  T++ Y  D   F  + A +    +       ++Y 
Sbjct: 9   IDEAYLDALDSYCVERASVRGDSVHTVRGYRNDLLDFGRWAARHGIVPL------DVTYR 62

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +IR+++ ++       R++ R LS ++ F ++L      +   +  +   K S  LPR +
Sbjct: 63  QIRSYLGEQNQAGYARRTINRRLSSLRGFFRWLNVTGRVSGDPVGVVSGPKLSKGLPRFI 122

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
                  +++     +  E    D RN AIL  LY  G RISEA  L   ++      +R
Sbjct: 123 PASDMARILNVHHSSSEPE----DMRNQAILEFLYASGARISEASGLLASDVDFSSRQVR 178

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIR 248
           + GKG K RIVPL      ++  Y +     L  +   P  F   RG+ ++    ++  +
Sbjct: 179 VMGKGSKERIVPLHDLAVSSMRAYAEHARPQLQGSGSCPRFFVSSRGRAMSTDALRKMFK 238

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     G+  + T H +RH+FAT LL  G DLRS+Q +LGH  LSTTQIYT+V+S+    
Sbjct: 239 RTLASAGVDGTYTPHDMRHTFATDLLDGGADLRSVQEMLGHASLSTTQIYTHVSSER--- 295

Query: 309 WMMEIYDQTHPS 320
            +  ++   HP 
Sbjct: 296 -LRSVHHAAHPR 306


>gi|158320625|ref|YP_001513132.1| tyrosine recombinase XerD [Alkaliphilus oremlandii OhILAs]
 gi|158140824|gb|ABW19136.1| tyrosine recombinase XerD [Alkaliphilus oremlandii OhILAs]
          Length = 294

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 87/309 (28%), Positives = 150/309 (48%), Gaps = 16/309 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +   ++   L+ E+ LSK TL+ Y+ D  Q+LI++     + + +      + T +  
Sbjct: 1   MEQLISSFTVYLDQEKKLSKNTLECYKRDIVQYLIYIDHVVNQDLFLT-----NKTTVIT 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++   +       ++ R+L+ I+ F K+L   K       +N+   K     P  L  ++
Sbjct: 56  YLLHLQKSGKSTATISRNLASIRCFYKFLLLNKRMDYDPTINLEAPKIERKTPMTLTLEE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+   L     E     AR+ A+L LLY  G+R++E +SL  +++  +   +R    
Sbjct: 116 VDLLLSQPL-----EITDKGARDKAMLELLYATGIRVTELISLNLEDVNLNLGFIRCHN- 169

Query: 194 GDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K R +P      +++ +Y  +     L    +  LF    GKPL+   F + I+    
Sbjct: 170 GSKERFIPTGSIALESLTKYIENHRASFLKDPSERSLFLNYYGKPLSRQGFWKIIKAYTE 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +  S T +TLRHSFATHL+ NG DL+S+Q +LGH  +STTQIY  V      + + E
Sbjct: 230 QSNIEKSITPNTLRHSFATHLIQNGADLKSVQEMLGHADISTTQIYAYV----MKNRIKE 285

Query: 313 IYDQTHPSI 321
           +Y++THP  
Sbjct: 286 VYNKTHPRA 294


>gi|260549307|ref|ZP_05823527.1| site-specific tyrosine recombinase [Acinetobacter sp. RUH2624]
 gi|260407713|gb|EEX01186.1| site-specific tyrosine recombinase [Acinetobacter sp. RUH2624]
          Length = 308

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 86/306 (28%), Positives = 165/306 (53%), Gaps = 14/306 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+  +I+   S+ T+ +YE D + FL F             ++ +  +++R ++++R  
Sbjct: 15  WLKERKIQNQ-SEHTITAYERDVKSFLEFCDSKKI------NLKNVEASDLREYLAQRVE 67

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           Q ++   S++R L+ I+ F+K+ ++ K    +   + +  ++   LP  ++ +    ++D
Sbjct: 68  QDQLSASSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILD 127

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             +     + + +  R+ A+L LLY  GLR++E   LT ++I  ++  +RI GKG+K RI
Sbjct: 128 QPMPEKPIDQQ-LWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRHLVRITGKGNKTRI 186

Query: 200 VPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP     ++++L +      +  + +    +F    G  L P   ++ ++   +  G+ +
Sbjct: 187 VPFGKKAKESLLNWLKVYKIWKGHFDQNAFVFISQHGGVLTPRQIEKRVKLQAQRAGVNV 246

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRH FA+H+LS+ GDLRS+Q +LGH  LSTTQIYT+++     D + ++YDQ H
Sbjct: 247 DLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHLAQVYDQAH 302

Query: 319 PSITQK 324
           P  T+ 
Sbjct: 303 PRATKH 308


>gi|53725157|ref|YP_102186.1| site-specific tyrosine recombinase XerD [Burkholderia mallei ATCC
           23344]
 gi|121601112|ref|YP_992015.1| site-specific tyrosine recombinase XerD [Burkholderia mallei SAVP1]
 gi|161723208|ref|YP_107488.2| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           K96243]
 gi|52428580|gb|AAU49173.1| tyrosine recombinase XerD [Burkholderia mallei ATCC 23344]
 gi|121229922|gb|ABM52440.1| tyrosine recombinase XerD [Burkholderia mallei SAVP1]
          Length = 305

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 83/301 (27%), Positives = 136/301 (45%), Gaps = 17/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   + +E GLS+ TL +Y  D + F  +LA          ++   S   +  +I+ R  
Sbjct: 20  FCDAMWLEHGLSRNTLDAYRRDLQLFAQWLAARH-----AASVDHASEPTLTEYIAARSD 74

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            K    S  R LS  + +  +  +         L + + K++   P  L+E Q   L+  
Sbjct: 75  GK--ATSSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALL-- 130

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                      +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+V
Sbjct: 131 ---AAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLV 187

Query: 201 PLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P        I  Y     P  L       LF   RG  +    F   I++  +   + + 
Sbjct: 188 PFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVH 247

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++   HP
Sbjct: 248 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LKTLHAAHHP 303

Query: 320 S 320
            
Sbjct: 304 R 304


>gi|325956667|ref|YP_004292079.1| integrase-recombinase [Lactobacillus acidophilus 30SC]
 gi|325333232|gb|ADZ07140.1| integrase-recombinase [Lactobacillus acidophilus 30SC]
 gi|327183490|gb|AEA31937.1| integrase-recombinase [Lactobacillus amylovorus GRL 1118]
          Length = 302

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 83/310 (26%), Positives = 146/310 (47%), Gaps = 14/310 (4%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           + E   ++  L+ ER  SK T+ SY  D  +   F     +E       ++++  +I+ +
Sbjct: 5   MDELDQFISYLQFERYYSKKTISSYATDLHEAKKFW----QENGGFAGWKKVTERDIQIY 60

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I     +K+   S  R +S + SF ++L +R+I        +   +    LP+   + + 
Sbjct: 61  IQHLGDRKLARSSQARQMSSLHSFYRFLTRRRIVKIDPTQTVVIRRGEKKLPQFFYQPEI 120

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             + D++        K +  RN A+  L Y  G+R+SE   LT   I  D  T+ + GKG
Sbjct: 121 KQVFDSL-----QGDKPLTVRNLALFELFYATGMRVSEVSGLTLPQIDLDLKTILVHGKG 175

Query: 195 DKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R V      + ++L Y +   P  L    +  +F   +GK ++    Q  +++    
Sbjct: 176 NKDRYVAFDDRTKNSLLNYLNNARPRLLKDKDEQHVFLSNQGKAISDRGIQYVMQKTFNQ 235

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+      H LRH+FAT +L+NG D+RS+Q +LGH  LS TQIYT+V + +    +   
Sbjct: 236 AGISGKVHPHELRHTFATAMLNNGADMRSVQELLGHSSLSATQIYTHVTTAH----LKSD 291

Query: 314 YDQTHPSITQ 323
           Y++  P   +
Sbjct: 292 YEKYFPRNKE 301


>gi|255029340|ref|ZP_05301291.1| hypothetical protein LmonL_09813 [Listeria monocytogenes LO28]
          Length = 450

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 79/299 (26%), Positives = 140/299 (46%), Gaps = 11/299 (3%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q +   L  ER  S  T  +YE D   F  FL      +  I T +Q+++ ++R ++
Sbjct: 6   KLEQQFFDYLHSERNYSVNTSTAYENDLLDFRRFL-----NEQAITTYQQVTFLDVRIYL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++ + +     ++ R +S ++SF  +L +  +  E+    + + K    LP+    ++  
Sbjct: 61  TELKQKSFSRTTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEME 120

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L   V      + + +  R+  +L +LYG G+R+SE   +   ++      + I+GKG+
Sbjct: 121 ALFQVVY----EDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGN 176

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R VP       AI +Y       ++        L     G PL     +  + ++   
Sbjct: 177 KERYVPFGAYAEDAITDYLPERVNLMSRYKKSHDALLVNHYGDPLTTRGIRYCLTKIISK 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             L      H LRH+FAT LL+NG D+R++Q +LGH  LS+TQIYT+V  +    ++ E
Sbjct: 237 ASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKRAFKVYLYE 295


>gi|212550679|ref|YP_002308996.1| site-specific recombinase XerD [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548917|dbj|BAG83585.1| site-specific recombinase XerD [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 299

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 145/304 (47%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++   L +E+ LS  ++ +Y  D  + L +L          + +  +  ++++   + 
Sbjct: 7   IKSYRMYLLLEKALSHNSVNAYMSDLEKLLKYLDSIG------KDLLNVELSDLQKMFTT 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I  RS  R +SGIKSF  +L+     T +    + + K    LP  L   +  ++
Sbjct: 61  LCEMGIHPRSQARIISGIKSFYYFLELEDQITNNPTEYLESPKVGRKLPEFLTVNEINSI 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +      T   +K    RN AI+  LY CGLRISE + L+  +   D+  L+I GKG+K 
Sbjct: 121 I-----ATIDLSKPNGQRNRAIIETLYSCGLRISELVKLSFSDFFPDEGFLKINGKGNKQ 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVP+  S  K I  Y        +    +  +F   RG  L+  +    ++      G+
Sbjct: 176 RIVPISNSAIKEIQLYLIDRQRSSIEKEFENIIFLNRRGTRLSRVMVFYLVKGCTVQAGI 235

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + HT RHSFATHLL  G +LR+IQ++LGH  ++TT+IYT++        ++E    
Sbjct: 236 KKNVSPHTFRHSFATHLLEGGANLRAIQAMLGHENITTTEIYTHLEIHFLRSEIIE---- 291

Query: 317 THPS 320
            HP 
Sbjct: 292 HHPR 295


>gi|118462850|ref|YP_882918.1| site-specific tyrosine recombinase XerC [Mycobacterium avium 104]
 gi|118164137|gb|ABK65034.1| tyrosine recombinase XerC [Mycobacterium avium 104]
          Length = 301

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 137/305 (44%), Gaps = 12/305 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + + L ++ G S  T ++Y  D R  L F             +  LS   +R+++S 
Sbjct: 8   LEEFDEYLALQCGRSAHTRRAYLGDLRSLLAFAGERG------TGLDGLSLPLLRSWLSA 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +   +L R  S +K+F  +  +R + T      ++  K   +LP  L + QAL  
Sbjct: 62  AAAGGVARTTLARRTSAVKAFTAWAVRRGLLTADPAARLQVPKTHRTLPAVLRQDQALGA 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +     + + +   I  R+  I+ +LY  G+R+SE   L   ++   +  +R+ GKG+K 
Sbjct: 122 M-AAAKNGAAQGDPIALRDRLIVEMLYATGIRVSELCGLDIDDVDTGRRLVRVLGKGNKQ 180

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R VP      +A+  +       L      P L  G RG+ L+    +  + Q    +  
Sbjct: 181 RSVPFGAPAGEALHAWLADGRPALANAESGPALLLGARGRRLDVRQARTVVHQTIAAVSG 240

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V        +  ++DQ
Sbjct: 241 APDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHV----AVSRLRAVHDQ 296

Query: 317 THPSI 321
            HP  
Sbjct: 297 AHPRA 301


>gi|41409056|ref|NP_961892.1| site-specific tyrosine recombinase XerC [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41397415|gb|AAS05275.1| XerC [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 301

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 136/305 (44%), Gaps = 12/305 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + + L ++ G S  T ++Y  D R  L F             +  LS   +R+++S 
Sbjct: 8   LEEFDEYLALQCGRSAHTRRAYLGDLRSLLAFAGERG------TGLDGLSLPLLRSWLSA 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +   +L R  S +K+F  +  +R + T      ++  K   +LP  L + QAL  
Sbjct: 62  AAAGGVARTTLARRTSAVKAFTAWAVRRGLLTADPAARLQVPKTHRTLPAVLRQDQALGA 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +       + +   I  R+  I+ +LY  G+R+SE   L   ++   +  +R+ GKG+K 
Sbjct: 122 M-AAAKTGAAQGDPIALRDRLIVEMLYATGIRVSELCGLDIDDVDTGRRLVRVLGKGNKQ 180

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R VP      +A+  +       L      P L  G RG+ L+    +  + Q    +  
Sbjct: 181 RSVPFGAPAGEALHAWLADGRPALANAESGPALLLGARGRRLDVRQARTVVHQTIAAVSG 240

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V        +  ++DQ
Sbjct: 241 APDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHV----AVSRLRAVHDQ 296

Query: 317 THPSI 321
            HP  
Sbjct: 297 AHPRA 301


>gi|331269460|ref|YP_004395952.1| tyrosine recombinase XerD [Clostridium botulinum BKT015925]
 gi|329126010|gb|AEB75955.1| tyrosine recombinase XerD [Clostridium botulinum BKT015925]
          Length = 292

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 81/302 (26%), Positives = 155/302 (51%), Gaps = 16/302 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +++++ +++ LSK T+++Y+ D  +F  FL    E       I       I A++   +
Sbjct: 7   KYIEDM-LKKELSKNTIEAYKRDLIKFGEFLNKRHE------DILDSDMVSIMAYVQTLK 59

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            ++  D S+ RSL  I++F K+L K     ++ ++N    K   +LP  L   +    + 
Sbjct: 60  KERKADSSIIRSLVAIRNFYKFLIKTGQNIDNPLINYEVPKNKRTLPETLTVDEVDKFL- 118

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                     ++   R+ A+L L+Y  G+++SE L +T  ++    S ++ +G  DK RI
Sbjct: 119 ----SAPDCNEYKGIRDKAMLELMYATGMKVSELLRITIFDVNLKLSYIKCKGAKDKERI 174

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +P+       + EY  +    +N +    LF  +RG  +    F + +++  +   +   
Sbjct: 175 IPIGSYAVNCLNEYLKVRDR-MNADNLELLFCNLRGGKMTRQGFWKIVKKYAKDANINKK 233

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
             ++TLRHSFA HLL NG D++S+Q +LGH  ++TTQIY++++ KN    ++++Y + HP
Sbjct: 234 IDSYTLRHSFAVHLLQNGADMKSVQELLGHNTIATTQIYSSISKKN---KIVDVYKKAHP 290

Query: 320 SI 321
             
Sbjct: 291 RA 292


>gi|269219629|ref|ZP_06163483.1| integrase/recombinase XerC [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269210871|gb|EEZ77211.1| integrase/recombinase XerC [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 303

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 98/305 (32%), Positives = 154/305 (50%), Gaps = 9/305 (2%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIF-LAFYTEEKITIQTIRQLSYTEIRAFIS 76
              + + L + RGLS+ T+ +Y  + R  L F       +      +R L   ++RA+++
Sbjct: 7   LDAYERELRLRRGLSENTVAAYVREARSLLEFIWEIAGGDVEEPMDLRGLELADVRAWLA 66

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           + + +     +L R  + I++F ++L ++  T       ++  +  N+LPR LN++QA  
Sbjct: 67  RSQAKGRSRSTLARHSASIRTFCRWLHRKGHTDVDAAARLKAPRADNALPRVLNQEQARR 126

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L +      +     +  R+ A + LLY  G+RI E  SL   + +   STLR+ GKGDK
Sbjct: 127 LAE-HAGRLAASGDPLALRDHAAVELLYASGIRIGELCSLDV-DSLGADSTLRVIGKGDK 184

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            RIVP     R+A+  Y       L +     LF G RG  L+P   ++ I +L    G+
Sbjct: 185 ERIVPFGVPARRALTAYLPARAQLL-VRPNRALFLGARGGRLDPRTLRKTIHRLAASAGV 243

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           P   + H LRHS ATHLL  G DLR++Q ILGH  L TTQ YT+V+S+     +   + Q
Sbjct: 244 P-DISPHDLRHSAATHLLDGGSDLRTVQEILGHASLGTTQRYTHVSSER----LRAAFTQ 298

Query: 317 THPSI 321
            HP  
Sbjct: 299 AHPRA 303


>gi|167718388|ref|ZP_02401624.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           DM98]
          Length = 299

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 83/301 (27%), Positives = 136/301 (45%), Gaps = 17/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   + +E GLS+ TL +Y  D + F  +LA          ++   S   +  +I+ R  
Sbjct: 14  FCDAMWLEHGLSRNTLDAYRRDLQLFAQWLAARH-----AASVDHASEPTLTEYIAARSD 68

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            K    S  R LS  + +  +  +         L + + K++   P  L+E Q   L+  
Sbjct: 69  GK--ATSSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALL-- 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                      +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+V
Sbjct: 125 ---AAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLV 181

Query: 201 PLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P        I  Y     P  L       LF   RG  +    F   I++  +   + + 
Sbjct: 182 PFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVH 241

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++   HP
Sbjct: 242 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LKTLHAAHHP 297

Query: 320 S 320
            
Sbjct: 298 R 298


>gi|316985480|gb|EFV64427.1| tyrosine recombinase XerC [Neisseria meningitidis H44/76]
          Length = 329

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 83/313 (26%), Positives = 148/313 (47%), Gaps = 17/313 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L      +L+N+  E G S+ T+ +Y  D     +       E++        +  +   
Sbjct: 34  LAAYLDAYLENIVRE-GKSEHTVAAYRRD-----LQELLALLEEMPSANPSNCTRGDFVQ 87

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            + +   + +G+R+L R LS  + +  +L KR +       +++  K+   +P+AL ++ 
Sbjct: 88  ALRRLSGRGLGERTLARKLSSWRQYCVWLVKRGLMHADPTADIKPPKQPERVPKALPQEW 147

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++D  +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GK
Sbjct: 148 LNRMLDLPV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVIGK 203

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R VPL+    +A+  Y  L     +      LF G  G  L+    Q+ + Q    
Sbjct: 204 GRKQRQVPLVGKSVEALKNYLPLRQTASDGK---ALFTGRNGTRLSQRQIQKRLAQWAAQ 260

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G     + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +
Sbjct: 261 NGDGRHVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARL 316

Query: 314 YDQTHPSITQKDK 326
           YD+ HP   ++D+
Sbjct: 317 YDEAHPRAKRQDE 329


>gi|294651114|ref|ZP_06728450.1| site-specific tyrosine recombinase [Acinetobacter haemolyticus ATCC
           19194]
 gi|292823008|gb|EFF81875.1| site-specific tyrosine recombinase [Acinetobacter haemolyticus ATCC
           19194]
          Length = 308

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 91/326 (27%), Positives = 166/326 (50%), Gaps = 22/326 (6%)

Query: 1   MEGN-NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
           ME +   PE +    LKER        I +  S  T+ +Y+ D   F  F  +   +   
Sbjct: 1   MEKDLEAPEKLLSMWLKER--------IIQNQSAHTISAYQRDLSDFFRFCEYKQLQ--- 49

Query: 60  IQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
              ++ +  +++R +++ R  Q ++   SL+R+L+ I+ F+K+  + +    +   +++ 
Sbjct: 50  ---LQDVEASDLREYLASRVEQDQLSSSSLQRNLTSIRQFMKWAAQGQYLQHNPSADLKL 106

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            ++   LP  ++ +    ++D        + + +  R+ A+L LLY  GLR++E   LT 
Sbjct: 107 KRQPRPLPGMIDIETVNQILDQAAPEKPIDQQ-LWLRDKAMLELLYSSGLRLAELQGLTI 165

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKP 237
           ++I  ++  LRI GKG+K RIVP     +++++E+      +  +      +F   RG  
Sbjct: 166 KDIDFNRQLLRITGKGNKTRIVPFGTKAKQSLIEWLKIYRIWQGSFMADSAVFISQRGGA 225

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L P   +  ++   +  G+ +    H LRH FA+H+LS   DLRS+Q +LGH  LSTTQI
Sbjct: 226 LMPRQIENRVKLQAQRAGVNVDLHPHLLRHCFASHMLSASRDLRSVQEMLGHSNLSTTQI 285

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQ 323
           YT+V+     D + ++YDQ HP   +
Sbjct: 286 YTHVDF----DQLAKVYDQAHPRAQK 307


>gi|153805941|ref|ZP_01958609.1| hypothetical protein BACCAC_00181 [Bacteroides caccae ATCC 43185]
 gi|149130618|gb|EDM21824.1| hypothetical protein BACCAC_00181 [Bacteroides caccae ATCC 43185]
          Length = 293

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 75/304 (24%), Positives = 143/304 (47%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L  L  ER  S+ T+ +Y  D +Q   F     +E+       ++    IR +I  
Sbjct: 3   IKSFLDYLRYERNYSEKTVLAYSEDIKQLQEF----AQEEYGRFNPLEVEAELIREWIVS 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S+ R LS ++SF KYL ++   T+  +  +   K    LP  L E +   L
Sbjct: 59  LMDRGYTSTSVNRKLSSLRSFYKYLLRQGEVTKDPLCKITGPKNKKPLPVFLKESEMNKL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D     T     +   R+  I+ + Y  G+R+SE + L  +++    S L++ GK +K 
Sbjct: 119 LD----ETDFGEGFKGYRDRLIIEVFYATGIRLSELIGLDDKDVDFSASLLKVTGKRNKQ 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R++P    +R+ +L Y ++    +    +   F    G+ L   +    +++    +   
Sbjct: 175 RLIPFGDELRELMLGYINIRNEMIPERSE-AFFVRENGERLYKNLVYNLVKRNLSKVVTL 233

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FAT +L+N  +L +++ +LGH  ++TT+IYT+   +     + ++Y Q 
Sbjct: 234 KKRSPHVLRHTFATTMLNNDAELGAVKELLGHESIATTEIYTHATFEE----LKKVYKQA 289

Query: 318 HPSI 321
           HP  
Sbjct: 290 HPRA 293


>gi|310287153|ref|YP_003938411.1| Integrase/recombinase XerC [Bifidobacterium bifidum S17]
 gi|309251089|gb|ADO52837.1| Integrase/recombinase XerC [Bifidobacterium bifidum S17]
          Length = 334

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 91/340 (26%), Positives = 150/340 (44%), Gaps = 46/340 (13%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           +   +L  L   RGLS  T+++Y  D R+ L  LA        I  +RQ++  ++R +++
Sbjct: 6   DLSAFLAYLRANRGLSDNTVKAYGTDVRECLHALASR-----GIADLRQVTTDDLRGWMA 60

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              T+     S+ R +  ++SF  +  +           +   K  ++LP  L E QA  
Sbjct: 61  F-ETRDHARSSMARKVVSVRSFFAWAHEHGRIEADPAAVLMTPKLPDTLPSVLTEAQAER 119

Query: 137 LVDNVLLHTS-----------------------------HETKWIDARNSAILYLLYGCG 167
           L+D V    S                                + +  R++A+L LLY  G
Sbjct: 120 LMDRVDDDASLHAASSQRYETRHDEMPRLDSAHRGEGMSQRDEVVALRDAAMLELLYATG 179

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY------YDLCPFDL 221
           +R++E + L   ++     T+R+ GKG K R+VP      KA+  +        L     
Sbjct: 180 IRVAELVGLDIGDVDWSHRTIRVTGKGSKQRVVPFGDPAEKALAGWKEHGRPLILRRAGA 239

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
                  LF G+RG+ ++  + +  + +  R  G+P   + H+LRHS ATH+L  G DLR
Sbjct: 240 GTLDTAALFLGMRGRRIDQRIVRDVVHRAARESGVP-DISPHSLRHSAATHMLDGGADLR 298

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            +Q +LGH  L TTQ YT+V+ +     + E Y Q  P  
Sbjct: 299 EVQEMLGHSSLRTTQRYTHVSIEQ----LKERYRQAFPRA 334


>gi|167618124|ref|ZP_02386755.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis
           Bt4]
          Length = 312

 Score =  239 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 82/301 (27%), Positives = 135/301 (44%), Gaps = 17/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   + +E GLS+ TL +Y  D + F  +LA          ++ +     +  +I+ R  
Sbjct: 27  FCDAMWLEHGLSRNTLDAYRRDLQLFAQWLAARH-----AVSLDRTERPMLEGYIAARSD 81

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            K    S  R LS  + +  +  +         L + + K++   P  L+E Q   L+  
Sbjct: 82  GK--ATSSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALL-- 137

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                      +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+V
Sbjct: 138 ---AAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLV 194

Query: 201 PLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P        I  Y     P  L       LF   RG  +    F   I++  +   +   
Sbjct: 195 PFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAH 254

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++   HP
Sbjct: 255 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LKALHATHHP 310

Query: 320 S 320
            
Sbjct: 311 R 311


>gi|99081269|ref|YP_613423.1| phage integrase [Ruegeria sp. TM1040]
 gi|99037549|gb|ABF64161.1| phage integrase [Ruegeria sp. TM1040]
          Length = 317

 Score =  239 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 93/326 (28%), Positives = 150/326 (46%), Gaps = 20/326 (6%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +   + L+    +L     E G ++ TL +Y  D R    ++          Q+  Q+  
Sbjct: 2   LAPADDLQWISTFLDAQAAELGAARNTLLAYGRDLRNVTTWMRTKG------QSFAQMQQ 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            +I A++     + +   +  R LS IK   ++  +     ++  L ++   +  SLP+ 
Sbjct: 56  ADIEAYLISCDAEGLSRATRARRLSAIKQIYRFAFEEGWRQDNPALQIKGPGRDKSLPKT 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+E +   L+          T+    RN+ ++ LLY  G+R+SE +SL       D + L
Sbjct: 116 LDEAEVDRLLAA--AREVGRTEADRLRNTCLMELLYATGMRVSELVSLPVSATRGDPNML 173

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN------IQLPLFRGI-RGKPLNPG 241
            I GKG K R+VPL P  R A+  +  L     +            LF    +   L   
Sbjct: 174 LILGKGGKERMVPLSPPARAALGAWIVLRDSLEDKREGQGHKASRFLFPSRSKEGHLTRH 233

Query: 242 VFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            F   I++L    G+ P   T HTLRH+FATHLL NG DLR+IQ++LGH  ++TT+IYT+
Sbjct: 234 RFYLLIKELAVAGGVSPEKVTPHTLRHAFATHLLQNGADLRAIQALLGHADIATTEIYTH 293

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKDK 326
           V        + E+  Q HP   + D+
Sbjct: 294 VLDAR----LAELVHQHHPLAAKDDE 315


>gi|294085404|ref|YP_003552164.1| phage integrase family protein [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664979|gb|ADE40080.1| phage integrase family protein [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 299

 Score =  239 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 109/309 (35%), Positives = 170/309 (55%), Gaps = 14/309 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
             R  WL  L  E+   + T+ +YE D   +  +LA   ++  +       + T  R +I
Sbjct: 5   AHRAAWLAWLAEEKRYGRNTIDAYETDLDDYTSYLATQPDKLTSSP-----NRTVFRGWI 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    + +   ++ R +S ++SFL++  ++ +    ++  +R  +   ++P++L+   A 
Sbjct: 60  ASMSGRDLARTTIARRVSALRSFLRFASRQNLLDVPDLSWLRAPRPPRTVPKSLSVDDAQ 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+  +         WI AR+ A+L LLYG GLRISEALSL  Q+       L I GKG+
Sbjct: 120 ALLAAIFAR--RGDDWIKARDFAVLMLLYGAGLRISEALSLRRQDAPLGD-WLSIMGKGN 176

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K+R VP+L +  +A+ EY DLCP  L L+   PLF   RG  L     QR +  LR  L 
Sbjct: 177 KMRDVPVLRAAAQAVDEYIDLCP--LALDSDKPLFVSSRGGALGARAVQRLVESLRVELD 234

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           LP   T H LRH+FATHLL NGGDLR+IQ +LGH  L+TTQ+YT+V+  +    +++++ 
Sbjct: 235 LPAHVTPHALRHAFATHLLGNGGDLRAIQQLLGHVSLATTQLYTHVDEAH----LVKVHQ 290

Query: 316 QTHPSITQK 324
           +THP    +
Sbjct: 291 ETHPRAKLR 299


>gi|209551174|ref|YP_002283091.1| site-specific tyrosine recombinase XerD [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209536930|gb|ACI56865.1| tyrosine recombinase XerD [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 317

 Score =  239 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 92/318 (28%), Positives = 149/318 (46%), Gaps = 18/318 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             +++L+ +  ERG +  TLQSYE D      FL   +        + + +  ++ A+++
Sbjct: 8   HVESFLEMMSAERGAAVNTLQSYERDLDDVHAFLTGRSVR------LTEAASADLAAYLA 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               +     S  R L+ ++ F K+L    + T+     +   KK   LP+ +  ++   
Sbjct: 62  SLARKGFKASSQARRLAAMRQFYKFLYAEGLRTDDPTGILDAPKKGRPLPKTMGVEEVGK 121

Query: 137 LVDNVLLHTSH--ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           L+             +    R  A+L LLY  G+R+SE +SL  + +  +   L I+GKG
Sbjct: 122 LLSQAEAEAGDAAPGQLQRLRMLALLELLYATGMRVSELVSLPARVLDQEGRFLMIRGKG 181

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFD----LNLNIQLPLFRG-IRGKPLNPGVFQRYIRQ 249
           +K R+VPL  S   A+  Y  L   +     N      LF    +   L   VF R ++ 
Sbjct: 182 NKERLVPLSQSAISALKSYGRLLAAENAAAKNPQESPWLFPAASKEGYLPRQVFARDLKN 241

Query: 250 LRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           L    GL  S  + H +RH+FA+HLL+NG DLR +Q +LGH  +STTQIYT+V  +    
Sbjct: 242 LAIRAGLTPSMISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER--- 298

Query: 309 WMMEIYDQTHPSITQKDK 326
            + ++    HP   Q  K
Sbjct: 299 -LQQLVQTHHPLAKQAKK 315


>gi|311108190|ref|YP_003981043.1| tyrosine recombinase XerD [Achromobacter xylosoxidans A8]
 gi|310762879|gb|ADP18328.1| tyrosine recombinase XerD [Achromobacter xylosoxidans A8]
          Length = 327

 Score =  239 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 79/331 (23%), Positives = 141/331 (42%), Gaps = 30/331 (9%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF----------------- 52
              E   +   ++  + +E GLS  TL +Y  D   F  +L                   
Sbjct: 6   PPLESQADIDAFIDAVWLEDGLSANTLAAYRRDLTGFARWLEDPEAYAREMADRHGDAAQ 65

Query: 53  -YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111
            +       + +R     +I A+ + R  +     +  R L+ ++ F  +  +       
Sbjct: 66  AHALPAGPAKPLRDAGKADIEAWFAFRHEETRA-TTANRRLAALRRFYAWALREHRAERD 124

Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
             L +   K+   +P+ L+E+Q   L+           +    R+ A+L  LY  GLR+S
Sbjct: 125 PCLTLIAAKQPPRMPKTLSEQQVDALL-----RAPDLGQARGLRDRAMLETLYATGLRVS 179

Query: 172 EALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPL 229
           E + +   ++  ++  +R+  GKG K R+VPL       I  Y      +L    +   L
Sbjct: 180 ELVGVRALDVSLNEGVVRVVLGKGGKDRLVPLGAEAAHWIDLYLKSGRPELAAGRVSDAL 239

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F   R + ++   F + +++      +    + H LRH+FATHLL++G DLR +Q +LGH
Sbjct: 240 FITGRAEAMSRQAFWQLVKKYALLADVRAPLSPHVLRHAFATHLLNHGADLRVVQMLLGH 299

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
             +STTQIYT+V  +     +  ++   HP 
Sbjct: 300 ADISTTQIYTHVARER----LKALHAAHHPR 326


>gi|86139973|ref|ZP_01058538.1| tyrosine recombinase XerD [Roseobacter sp. MED193]
 gi|85823391|gb|EAQ43601.1| tyrosine recombinase XerD [Roseobacter sp. MED193]
          Length = 328

 Score =  239 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 88/333 (26%), Positives = 150/333 (45%), Gaps = 25/333 (7%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
               + L+    +L     E G ++ TL +Y  D +    +LA +           + + 
Sbjct: 2   AAPGDDLQWISTFLDAQAAELGAARNTLLAYGRDLKDAASWLAHHDNR------FSEAAR 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            +I A++     + +   +  R LS ++    +  +    +++  + ++   ++ +LP+ 
Sbjct: 56  EDIEAYLISCNAEGLSRATRARRLSALRQLYHFAFEEGWRSDNPAIQIKGPGRAKTLPKT 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L   +   L+D      +        RN+ ++ LLY  G+R+SE +SL       D + L
Sbjct: 116 LEVIEVDRLLDA--ARQTGRKPADRLRNTCLMELLYATGMRVSELMSLPVAAARGDPNML 173

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCP------FDLNLNIQLPLFRGI-RGKPLNPG 241
            +QGKG K R+VPL P  R+A+  +                     LF    +   L   
Sbjct: 174 LVQGKGGKERMVPLSPPAREALRAWLMQRDEADEDSQAKGNPGSKFLFPSRGKEGHLTRH 233

Query: 242 VFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            F   I+ L    G+ P   T HTLRH+FATHLL+NG DLR+IQ++LGH  ++TT+IYT+
Sbjct: 234 WFYLLIKDLAVTGGVDPKKVTPHTLRHAFATHLLANGADLRAIQALLGHADIATTEIYTH 293

Query: 301 VNSKNGGDWMMEIYDQTHPS-----ITQKDKKN 328
           V        + E+  Q HP        Q+ K+N
Sbjct: 294 VLDAR----LSELVLQHHPLSREGEARQRLKEN 322


>gi|309780244|ref|ZP_07674995.1| tyrosine recombinase XerC [Ralstonia sp. 5_7_47FAA]
 gi|308920947|gb|EFP66593.1| tyrosine recombinase XerC [Ralstonia sp. 5_7_47FAA]
          Length = 328

 Score =  239 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 93/341 (27%), Positives = 160/341 (46%), Gaps = 35/341 (10%)

Query: 6   LPEIVSFEL------LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
           +P+  S +         +   +L  L+ ER LS  TL+SY  +       L     +   
Sbjct: 1   MPQSASADASGAQAPHPQIAAYLDALKFERQLSPHTLESYTREL----AVLQRLGAQHAA 56

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNILNMRN 118
              + QL    IR  +++     +  RS+ R+LS  + + K++  R    T + +  +R 
Sbjct: 57  NVDLTQLQSHHIRRMMAQLHGDGLSGRSIARALSAWRGWFKWMALRDAAVTANPVDGVRA 116

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            K    LP+AL+ +QA+ L++ +             R+ A+  L Y CGLR+SE +SL  
Sbjct: 117 PKSPKRLPKALSVEQAVALMEQL-----PGDDPETVRDRAVNELFYSCGLRLSELVSLDM 171

Query: 179 QNI-----------MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC----PFDLNL 223
           +++             +   +++ GKG K R VP+     +A+  +  +       D   
Sbjct: 172 RHVKAGAYESASWLDLEAREVQVLGKGSKRRTVPVGTKAAEALAAWLAVRAQLARPDAAP 231

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                LF   RGK L     Q  +++     G+P     H LRHSFATH+L + GDLR++
Sbjct: 232 EDAHALFLSPRGKRLAQRQIQLRMKRNAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAV 291

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           Q +LGH  +++TQ+YT+++ ++    + +IYDQ HP   +K
Sbjct: 292 QELLGHASIASTQVYTSLDFQH----LAKIYDQAHPRAKKK 328


>gi|59713090|ref|YP_205866.1| site-specific tyrosine recombinase XerC [Vibrio fischeri ES114]
 gi|197336470|ref|YP_002157268.1| tyrosine recombinase XerC [Vibrio fischeri MJ11]
 gi|59481191|gb|AAW86978.1| site-specific tyrosine recombinase [Vibrio fischeri ES114]
 gi|197317960|gb|ACH67407.1| tyrosine recombinase XerC [Vibrio fischeri MJ11]
          Length = 303

 Score =  239 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 86/319 (26%), Positives = 160/319 (50%), Gaps = 16/319 (5%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           + +++  +  K    + + L  E+GLS  T ++Y+         L      ++ +++ + 
Sbjct: 1   MSDVLPVQFSKHLDAFYEFLRNEKGLSIYTQRNYKRQLTTIAEQLV-----ELGVESWQD 55

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +    +R   SK   + +   SL   LS ++SF  +L  R + T +    +   +KS  L
Sbjct: 56  VDAGWVRQVTSKGMREGLKASSLSTRLSSLRSFFDFLVLRNVLTANPAKGVSAPRKSRPL 115

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P+ ++  +   L++       +E   +  R+ AI+ L+YG GLR++E +S+  ++I   Q
Sbjct: 116 PKNIDVDEMGQLLEV------NEDDPLSIRDRAIMELMYGAGLRLAELVSIDVRDIQLRQ 169

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             LR+ GKGDK R VP     ++ +  +  +    L    +  LF    G  ++    Q+
Sbjct: 170 GELRVIGKGDKERKVPFSGQAKEWLGHWLRVRN-QLAKPEEKGLFVSKLGVRISHRNVQK 228

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            + +     G+    + H LRHSFATH+L + G+LR++Q +LGH  +STTQIYT+++ ++
Sbjct: 229 RMAEWGLKQGVNSHISPHKLRHSFATHMLESSGNLRAVQELLGHENISTTQIYTHLDFQH 288

Query: 306 GGDWMMEIYDQTHPSITQK 324
               + + YDQ HP   +K
Sbjct: 289 ----LAQAYDQAHPRAKKK 303


>gi|313676501|ref|YP_004054497.1| integrase family protein [Marivirga tractuosa DSM 4126]
 gi|312943199|gb|ADR22389.1| integrase family protein [Marivirga tractuosa DSM 4126]
          Length = 293

 Score =  239 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 152/304 (50%), Gaps = 12/304 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           R  + + L+ E+  S  TL SY+ D  QF  +L    E++     + +  +  IR+++  
Sbjct: 2   RDTFFKYLQFEKRYSSHTLVSYQNDLDQFSKYL----EDQFQTCDLLKAEHRHIRSWVVN 57

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +  RS+ R +  ++SF K+   R+   ++    ++ LK +  LP+ + EK+    
Sbjct: 58  LMQDGVKPRSINRKIIALRSFYKFAISREAIHQNPTQKIKALKSAKELPQFVQEKEM--- 114

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            DN+L H      +   R++ I+ LLYG G+R++E + L   +      T+RI GKG+K 
Sbjct: 115 -DNLLSHIVFPEDFEGNRDALIMELLYGTGMRLAELIGLKEDDFNRQAGTIRILGKGNKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VP    + + + +Y        + N Q PL     G    P +  R  ++    +   
Sbjct: 174 RVVPFHLEIGRRLDKYIFHKKELFSHNGQSPLIVSNNGSKAYPMLINRITKKYLDQVTTI 233

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FATHLL+ G DL +++ +LGH  L+ TQ+YT+    N  D + +++DQ 
Sbjct: 234 SKRSPHVLRHTFATHLLNKGADLNAVKDMLGHSSLAATQVYTH----NSLDKLKKVFDQA 289

Query: 318 HPSI 321
           HP  
Sbjct: 290 HPKA 293


>gi|257055038|ref|YP_003132870.1| tyrosine recombinase XerC subunit [Saccharomonospora viridis DSM
           43017]
 gi|256584910|gb|ACU96043.1| tyrosine recombinase XerC subunit [Saccharomonospora viridis DSM
           43017]
          Length = 329

 Score =  239 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 85/330 (25%), Positives = 150/330 (45%), Gaps = 19/330 (5%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           L   +  +  +   ++  +L  ER LS+ T ++Y  D    L FL    E+     +  +
Sbjct: 4   LRAALPPQAAEIVADYEDHLRDERMLSQHTTRAYVGDVVSLLAFLHGVNEDGADGPSAHE 63

Query: 66  -------------LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
                        L    +RA+++++        ++ R ++  ++F  +  +R +     
Sbjct: 64  EHPDGEHSDGVNGLHVGVLRAWLARQHEAGCSRATVARRVASARTFTAWAYRRGLLPSDP 123

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
            + + + +    LP  L   +A  L+      T+     +  R+ A++ LLY  G+RISE
Sbjct: 124 GIRLASPRPHRRLPGVLRMDEATELMRVSEAGTA-TGHPVALRDHALIELLYATGVRISE 182

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFR 231
              L   ++  D+  +R+ GKG K R+VP      +A+  +      ++   +    LF 
Sbjct: 183 LCGLDIDDVDFDRRVVRVLGKGRKQRMVPFGLPSERALRLWLRQGRPEVATADSGAALFL 242

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           G RGK ++P   +R +      +        H LRHS ATH+L  G DLRS+Q +LGH  
Sbjct: 243 GARGKRVDPRTVRRVVHDAVAAVPGAADIGPHGLRHSAATHMLDGGADLRSVQELLGHAT 302

Query: 292 LSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           L+TTQ+YT+V  +     +  I+DQTHP  
Sbjct: 303 LATTQLYTHVTVER----LKAIHDQTHPRA 328


>gi|149200277|ref|ZP_01877298.1| integrase/recombinase [Lentisphaera araneosa HTCC2155]
 gi|149136641|gb|EDM25073.1| integrase/recombinase [Lentisphaera araneosa HTCC2155]
          Length = 318

 Score =  239 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 93/309 (30%), Positives = 157/309 (50%), Gaps = 11/309 (3%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            + + L+ E+  S  T ++Y  D  +F+         +      +Q+     + +I   +
Sbjct: 12  AFFKYLKTEKNFSLHTQKAYFFDIVEFITQTWGDEAIEAQSLAWKQIDKNAAKGYIFSLQ 71

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
             KI   +L R  S ++S   + ++ ++ + +   +++  KK  SLP  L+ +   TL+ 
Sbjct: 72  ESKISKNTLLRKCSSLRSLYNFFQREELQSTNPFQDIKAAKKDKSLPLILSREDISTLLS 131

Query: 140 ----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
                          ++ +R++AIL ++Y  GLRI EAL +    I  ++STL+I GKG 
Sbjct: 132 SPAPYWAQKKGKNNDFMASRDAAILEIIYSGGLRIQEALDINFDQINLEESTLKIFGKGK 191

Query: 196 KIRIVPLLPSVRKAILEYY-DLCPFDLNL-NIQLPLFRGIRG-KPLNPGVFQRYIRQLRR 252
           K R   L    ++A+ +Y+      +LN  +   P+F  ++  K L+    QR ++   +
Sbjct: 192 KQRTAYLGNPAKQALEQYFACRKNAELNWTSANDPVFINLKDLKRLSARSIQRNLKAYLQ 251

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              LP   T H LRHSFATHLL  G DLRS+Q +LGH  LSTTQIYT++++    D +++
Sbjct: 252 SCQLPPDITPHKLRHSFATHLLDAGADLRSVQELLGHENLSTTQIYTHIST----DRLLQ 307

Query: 313 IYDQTHPSI 321
            YDQ HP  
Sbjct: 308 AYDQAHPHA 316


>gi|149202773|ref|ZP_01879745.1| tyrosine recombinase XerD [Roseovarius sp. TM1035]
 gi|149144055|gb|EDM32089.1| tyrosine recombinase XerD [Roseovarius sp. TM1035]
          Length = 323

 Score =  239 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 87/323 (26%), Positives = 152/323 (47%), Gaps = 20/323 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E  +    +L+    E G +K TL +Y  D + F  ++            ++ L+  +I 
Sbjct: 3   EAARWIDLFLEAQAAELGAAKNTLLAYARDLKDFSEWVENQG------LALQTLTQPDID 56

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            ++     Q +   +  R LS I+   ++    ++  ++  + ++   K+  LP+ L+E+
Sbjct: 57  RYLVFCDAQGLARATRARRLSAIRQLYRFAFDERLRADNPAIRIKGPGKAQRLPKTLSEE 116

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L+D    H    T    +RN+ ++ LLY  G+R+SE +SL       D   + ++G
Sbjct: 117 EVSRLLDMAPAHG--RTASERSRNACLVALLYATGMRVSELVSLPLGAARGDPRMILVRG 174

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN------IQLPLF-RGIRGKPLNPGVFQR 245
           KG K R+VPL P  R A+ ++  +   + +            LF  G     L    F  
Sbjct: 175 KGGKERMVPLSPPARAALSDWLAIRDAEESARRAKGVQSSPYLFASGGASGHLTRHRFYN 234

Query: 246 YIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            I+++     + P   T HTLRH+FATHLL+NG DLR IQ++LGH  ++TT+IYT+V   
Sbjct: 235 LIKEISVKAHVDPDKVTPHTLRHAFATHLLANGADLRVIQTLLGHADVATTEIYTHVLEA 294

Query: 305 NGGDWMMEIYDQTHPSITQKDKK 327
                +  +  + HP      +K
Sbjct: 295 R----LQALVQEHHPLAQAARRK 313


>gi|327483029|gb|AEA77436.1| Tyrosine recombinase XerC [Vibrio cholerae LMA3894-4]
          Length = 267

 Score =  239 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 70/272 (25%), Positives = 141/272 (51%), Gaps = 11/272 (4%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           ++ +    QL    +R  + + + Q +   S+   LS ++SFL +L  R     +    +
Sbjct: 7   QVGLTHWTQLDSAWVRQLVMQGKRQGMKASSIATRLSSLRSFLDFLILRGELEANPAKGV 66

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              +K  +LP+ L+  +   L++        +   +  R+ AI+ L+YG GLR++E +S+
Sbjct: 67  SAPRKQRTLPKNLDVDEMAQLLEVT------DDDPLSIRDRAIMELMYGAGLRLAELVSI 120

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
             +++   +  +R+ GKG+K R V      ++ + ++  L    L  + +  LF    G 
Sbjct: 121 DVKDVNLSEGEIRVIGKGNKERKVWFAGQAQEWVGKWLKLRS-QLADSAETALFVSKLGT 179

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            ++    Q+ + +  +   +    + H LRHSFATH+L +  +LR++Q +LGH  ++TTQ
Sbjct: 180 RISHRSVQKRMAEWGQKQAVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQ 239

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           IYT+++ ++    + ++YDQ HP   +K+K +
Sbjct: 240 IYTHLDFQH----LAQVYDQAHPRARKKNKDD 267


>gi|226952079|ref|ZP_03822543.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244]
 gi|226837171|gb|EEH69554.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244]
          Length = 310

 Score =  239 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 90/326 (27%), Positives = 164/326 (50%), Gaps = 22/326 (6%)

Query: 1   MEGN-NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
           ME +   PE +    LKER        + +  S  T+ +Y+ D   F  F  +   +   
Sbjct: 1   MENDLETPEKLLSMWLKER--------VIQNQSAHTISAYQRDLTDFFKFCEYKQLQ--- 49

Query: 60  IQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
              +  +  +++R +++ R  Q ++   SL+R L+ I+ F+K+  + +    +   + + 
Sbjct: 50  ---LEDVEASDLREYLASRVEQDQLSSSSLQRHLTSIRQFMKWAAQGRYLQHNPSADFKL 106

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            ++   LP  ++ +    ++D        + + +  R+ A+L LLY  GLR++E   LT 
Sbjct: 107 KRQPRPLPGMIDIETVNQILDQTAPEKLIDQQ-LWLRDKAMLELLYSSGLRLAELQGLTI 165

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKP 237
           ++I  ++  LRI GKG+K RIVP     +++++E+      +         +F   +G+ 
Sbjct: 166 KDIDFNRQLLRITGKGNKTRIVPFGLKAKQSLIEWLKIYRIWQGGFTADSAVFISQQGRA 225

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L P   +  ++   +  G+ +    H LRH FA+H+LS  GDLRS+Q +LGH  LSTTQI
Sbjct: 226 LMPRQIENRVKLQAQRAGVNVDLHPHLLRHCFASHMLSASGDLRSVQEMLGHSNLSTTQI 285

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQ 323
           YT+V+     D + ++YDQ HP   +
Sbjct: 286 YTHVDF----DQLAKVYDQAHPRAQK 307


>gi|319788011|ref|YP_004147486.1| tyrosine recombinase XerD [Pseudoxanthomonas suwonensis 11-1]
 gi|317466523|gb|ADV28255.1| tyrosine recombinase XerD [Pseudoxanthomonas suwonensis 11-1]
          Length = 326

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 84/314 (26%), Positives = 142/314 (45%), Gaps = 24/314 (7%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +    +L     ERGL++ +L +Y  D      +        +            +  ++
Sbjct: 27  RAIARFLDATWAERGLARASLDAYRRDLELLARWRDGTGGGLVGA------DREALFGYL 80

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           + R     G RS  R  + +++F  +L    +  +     +   +    LP+A++E Q  
Sbjct: 81  AWRAGHGYGPRSNARLRACLRAFYAHLVLAGVRQDDPAALIDPPRMPRPLPKAMSESQVE 140

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+          +     R+ A+L L+Y  GLR+SE ++L    +   Q  +R++GKG 
Sbjct: 141 ALL-----GVPDVSIPEGLRDRAMLELMYAAGLRVSELVNLPANAVNLRQGVVRVRGKGS 195

Query: 196 KIRIVPLLPSVRKAILEYYDL--------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           K R+VPL    +  +  Y            P   + + ++PLF G          F R I
Sbjct: 196 KERLVPLGEESQDWLERYLRESRPALTGGRPVPADASGEVPLFIGASRSAPTRQDFWRAI 255

Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           ++     G+ P + T H LRHSFATHLL++G DLR++Q +LGH  LSTTQIYT V  ++ 
Sbjct: 256 KRHAAAAGIDPRTVTPHGLRHSFATHLLNHGADLRALQLLLGHASLSTTQIYTLVAREH- 314

Query: 307 GDWMMEIYDQTHPS 320
              +  ++ + HP 
Sbjct: 315 ---LQRLHARHHPR 325


>gi|299822639|ref|ZP_07054525.1| tyrosine recombinase XerC [Listeria grayi DSM 20601]
 gi|299816168|gb|EFI83406.1| tyrosine recombinase XerC [Listeria grayi DSM 20601]
          Length = 304

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 87/307 (28%), Positives = 146/307 (47%), Gaps = 16/307 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q++L  LE ER  S  T+ +Y+ D   F  FL         I+++  + Y E+R ++++
Sbjct: 11  VQSFLTYLEKERNYSAYTVAAYKQDIHDFQTFLKEEI-----IESLTDVRYLEVRVYLTR 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R ++    ++ R LS ++SF  +L + +   E+    + + K    LP+    ++   L
Sbjct: 66  LREKEYSRSTVSRKLSSLRSFYTFLLRDQQIAENPFSYVSHSKNHLRLPKFFYSEEMEAL 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
              V      + K +  RN A+L +LYG G+R+SE   +   +I     ++ I+GKG+K 
Sbjct: 126 FTVVY----QDDKLLTLRNRALLEILYGTGIRVSECADIRLADIDATYQSILIRGKGNKE 181

Query: 198 RIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           R VP       A+  Y         +        LF    G PL P   +  + +     
Sbjct: 182 RYVPFGAYAEDAVQLYLEASRKALMEKYHKEHDYLFVNHYGDPLTPRGIRYCLSKTIESA 241

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            +      H LRH+FAT LL+NG D+R++Q +LGH  LS+TQIYT+V  ++    +   Y
Sbjct: 242 AMTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----LKATY 297

Query: 315 DQTHPSI 321
            + HP  
Sbjct: 298 MKFHPRA 304


>gi|226525271|gb|ACO70871.1| integrase family protein [uncultured Verrucomicrobia bacterium]
          Length = 294

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 149/305 (48%), Gaps = 19/305 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L +LE ER +S  TL +Y+    +F         + +     + L+    R ++   
Sbjct: 7   EGFLHHLENERNVSPRTLTNYQHALSEF--------RKAMPDANWKTLTADHFRRYLFAM 58

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +++   + +   + +++F KYL +R     + +  ++  K    LP  L  KQ + L+
Sbjct: 59  AKREMSKPTQRLHFAALRTFYKYLVERHGLETNPLKQVQLPKLDRKLPVVLTAKQVVELL 118

Query: 139 DNVLLHTSHETK--WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           +  L     +    W+  R++AI+ L Y  GLR++E + L   ++     ++R+ GKG K
Sbjct: 119 EAPLKVDKQKQAPVWMPFRDAAIMELFYSSGLRLAELVGLNVADLDVYTESVRVIGKGRK 178

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+VP+      A+ +Y       +      PLF       L P      I++   +  +
Sbjct: 179 ERVVPVGQPALLAVQKYRQEAKVHVG-----PLFISKLRTRLTPMRVWLVIQRYLPHTSI 233

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           P++ T H LRHSFATHLL +G DLR++QS+LGH  LSTTQIYT+V ++     +   YD 
Sbjct: 234 PVNVTPHKLRHSFATHLLDHGADLRAVQSLLGHASLSTTQIYTHVTTER----LKRAYDD 289

Query: 317 THPSI 321
            HP  
Sbjct: 290 AHPRA 294


>gi|115352658|ref|YP_774497.1| site-specific tyrosine recombinase XerD [Burkholderia ambifaria
           AMMD]
 gi|115282646|gb|ABI88163.1| tyrosine recombinase XerD [Burkholderia ambifaria AMMD]
          Length = 322

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 82/301 (27%), Positives = 134/301 (44%), Gaps = 17/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   L +E GL++ TL +Y  D   F  +LA   +       +       +  +I+ R  
Sbjct: 37  FCDALWLEHGLARNTLDAYRRDLVLFSQWLAATHD-----VPLDSADEAMLIGYIAARSD 91

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            K    S  R LS  + +  +  +    +    L + + K++   P  L+E Q   L+  
Sbjct: 92  GK--ATSSNRRLSVFRRYYGWAVREHHASADPTLRITSAKQAARFPSTLSEAQVEALL-- 147

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                      +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+V
Sbjct: 148 ---GAPDIGTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLV 204

Query: 201 PLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P        I  Y     P  L       LF   RG  +    F   I++  +   +   
Sbjct: 205 PFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAH 264

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++   HP
Sbjct: 265 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LKTLHATHHP 320

Query: 320 S 320
            
Sbjct: 321 R 321


>gi|87309301|ref|ZP_01091437.1| integrase/recombinase [Blastopirellula marina DSM 3645]
 gi|87287940|gb|EAQ79838.1| integrase/recombinase [Blastopirellula marina DSM 3645]
          Length = 291

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 140/305 (45%), Gaps = 20/305 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +   L+ E  L+  T+ +Y  D  +F  +L          + IR L   E+  +++   
Sbjct: 4   AFTDYLQSECHLAANTVAAYRRDLVRFERWL--------GAREIRTLRVGELSDYVAWLY 55

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +++   S+ R++  +K F +YL+   I  ++ +  + + K    +P  +   +   L+ 
Sbjct: 56  KEELAPASIARAVVSLKIFFRYLQLEGILQDNLVELLGSQKIWRRIPSVIAPHKIDDLL- 114

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                          R+ A+L +LY  G R SE   L   ++  D+  ++ +GKG K RI
Sbjct: 115 ----TAPWSEDPYWRRDRALLEVLYATGCRASEVSGLRMDDVHLDEGYVKCEGKGSKQRI 170

Query: 200 VPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            PL     + +  Y D     L   NL     LF    GK L+       +++     G+
Sbjct: 171 APLAQKSARVVKTYLDEERPRLSKKNLRDAAFLFLSRSGKRLSRIAIWELVKKYAARAGI 230

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H+LRHSFATHLL+ G DLR +Q ++GH  ++TTQIYT+V+       + +++ Q
Sbjct: 231 DPDVSPHSLRHSFATHLLAGGADLRHVQEMMGHASIATTQIYTHVDQSR----LKKVHAQ 286

Query: 317 THPSI 321
            HP  
Sbjct: 287 YHPRA 291


>gi|188994249|ref|YP_001928501.1| putative integrase/recombinase XerD [Porphyromonas gingivalis ATCC
           33277]
 gi|188593929|dbj|BAG32904.1| putative integrase/recombinase XerD [Porphyromonas gingivalis ATCC
           33277]
          Length = 308

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 89/303 (29%), Positives = 148/303 (48%), Gaps = 16/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +   L +E  L+  ++ +Y  D  +   +L   T E I+    R++SY  ++ F+++ 
Sbjct: 8   KRYKSYLSLELHLTPNSVDAYLKDLSKLDSYL---TAENIS---FREVSYENLQHFVAEL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               I  RS+ R +SG+KSF ++L   +         +   +    LP  L  ++   L+
Sbjct: 62  YDLGISARSIARIISGVKSFFRFLVLEEYIEADPTELLEGPRIGVHLPTVLTIEEVDRLI 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                           RN AIL +LY CGLR+SE  SL   N+  ++S LRI GKG K R
Sbjct: 122 -----GAIDPAAQGAQRNRAILEILYSCGLRVSELTSLKFSNLFLNESFLRIDGKGRKQR 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+  +    +  Y          L  +  +F   RGK ++  +    I++L    G+ 
Sbjct: 177 LVPMSETAITELKRYLSDPERPTPVLGQEEYVFLSNRGKAISRIMVFVMIKKLAEEAGIT 236

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            S + HT RHSFATHLL  G +L++IQ +LGH  ++TT+IYT+++ +     +    +  
Sbjct: 237 KSISPHTFRHSFATHLLEGGANLQAIQLMLGHENIATTEIYTHIDRETLRHEI----ETY 292

Query: 318 HPS 320
           HP 
Sbjct: 293 HPR 295


>gi|160900549|ref|YP_001566131.1| tyrosine recombinase XerD [Delftia acidovorans SPH-1]
 gi|160366133|gb|ABX37746.1| tyrosine recombinase XerD [Delftia acidovorans SPH-1]
          Length = 327

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 79/307 (25%), Positives = 134/307 (43%), Gaps = 15/307 (4%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L     ++  L +E GLS+ TL +Y  D   +  +LA     +     +      E++ +
Sbjct: 34  LDALDLFMDALLLEDGLSRNTLAAYRRDLTAWGRWLA----HQQPPLALDAAGELELQGY 89

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
            + R  Q     S  R L+ ++ +  +  + +         M   ++   +P  L + Q 
Sbjct: 90  FAVRVEQTKASSS-NRRLTVLRRYYHWALREQRIAADPTARMLAARQPPRVPHTLTQAQV 148

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+             +  R+ A+L L+Y  GLR+SE + L    I      LR+ GKG
Sbjct: 149 EALL-----RAPDVDTPLGLRDRAMLELMYASGLRVSELVDLPLHGIDLRSGVLRVTGKG 203

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            K R+VP        +  Y        L       +F   RG  ++  +F   +++  + 
Sbjct: 204 QKERLVPFGQEAHWWLERYLATARGAILGGQRSDAVFVTQRGAAMSRVMFWVIVKRCAQV 263

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    + HTLRH+FATHLL++G DLR +Q +LGH  +STT IYT+V  +     +  +
Sbjct: 264 AGVTAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHVARER----LKAL 319

Query: 314 YDQTHPS 320
           +   HP 
Sbjct: 320 HALHHPR 326


>gi|94309464|ref|YP_582674.1| site-specific tyrosine recombinase XerD [Cupriavidus metallidurans
           CH34]
 gi|93353316|gb|ABF07405.1| tyrosine-based site-specific recombinase [Cupriavidus metallidurans
           CH34]
          Length = 302

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 82/308 (26%), Positives = 140/308 (45%), Gaps = 17/308 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L     +   L +E GL++ T+ +Y  D      +L      +     +  +  T +  +
Sbjct: 9   LSLVDRFCDALWLEDGLARNTIDAYRRDLAMLARWL-----HESGTTALLGVDDTALSGY 63

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
            + R  +     S  R L+  + F ++  +  +      L +R  K+    P+ L+E Q 
Sbjct: 64  FAARHLETRA-SSANRRLTVFRRFYQWALREHMIEADPCLLLRPAKQPPRFPKTLSEAQV 122

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-K 193
           + L++            +  R+  +L L+Y  GLR+SE  ++    +  ++   R+ G K
Sbjct: 123 VALLE-----APDIETPLGLRDRTMLELMYASGLRVSELTNMKTIEVGLNEGVARVVGGK 177

Query: 194 GDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G+K R+VP        +  Y  D  P  L       LF   RG+ +    F   I++  R
Sbjct: 178 GNKERLVPFGAQAGDWLHRYLSDARPTLLAGRACDELFVTQRGEGMTRQTFWHLIKKHAR 237

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     + E
Sbjct: 238 DAGIHAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER----LRE 293

Query: 313 IYDQTHPS 320
           ++   HP 
Sbjct: 294 LHLHHHPR 301


>gi|154491730|ref|ZP_02031356.1| hypothetical protein PARMER_01346 [Parabacteroides merdae ATCC
           43184]
 gi|154087971|gb|EDN87016.1| hypothetical protein PARMER_01346 [Parabacteroides merdae ATCC
           43184]
          Length = 302

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 83/309 (26%), Positives = 150/309 (48%), Gaps = 17/309 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             ++L  L  ER  S+ T+ +Y  D +QF  F+    E+K  I    ++    +R +I  
Sbjct: 5   IDSFLDYLRYERNYSEYTINAYFKDLQQFEDFVK---EKKEGIFVPEEVDTDIVRNWIIS 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
               KI   S+ R LS +KSF K+L K+   + + +  +   K    LP  + EK    L
Sbjct: 62  LLDNKISPVSVNRKLSSLKSFFKFLMKQGFVSVNPLRFVTGPKTKKPLPTFVKEKDMEEL 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D        +  +   R+  +L +LY  G+R SE + L   +I  D   +R+ GK +K 
Sbjct: 122 LD----GDGFDEDFEGVRDRLVLEMLYDTGVRRSELVGLQDTDIDYDAMLIRVTGKRNKQ 177

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R++P    ++  +L Y ++   +++       F    G+ L+ G+    ++  +R   +P
Sbjct: 178 RLIPFAERLKNLMLAYTEVRNREVDAGC-GWFFVRKNGEQLSTGILYTIVK--KRLSDIP 234

Query: 258 --LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRHSFAT +L+NG +L +++ +LGH  L++T IYT+   +     + ++Y 
Sbjct: 235 TLAKCSPHVLRHSFATSMLNNGAELNAVKELLGHSSLASTSIYTHTTFEE----LKKVY- 289

Query: 316 QTHPSITQK 324
             HP   ++
Sbjct: 290 HAHPRAQKE 298


>gi|253566649|ref|ZP_04844102.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|251944821|gb|EES85296.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
          Length = 293

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 76/303 (25%), Positives = 139/303 (45%), Gaps = 13/303 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L  L  ER  S+ T+ +Y  D  Q   F     E+        ++    +R +I   
Sbjct: 4   DSFLDYLRYERNYSEKTVLAYGEDISQLREFAQERMEKF----DPAEVKPELVREWIVSL 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     S+ R LS ++SF KYL ++   +   +  +   K    LP  L E +   L+
Sbjct: 60  MDQGYTSTSVNRKLSSLRSFYKYLLRQGEVSVDPLRKITGPKNKKPLPSFLKESEMNKLL 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D     T         R+  I+ + Y  G+R+SE + L  +++    S L++ GK +K R
Sbjct: 120 D----DTDFGEGLKGCRDRLIIEMFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQR 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++P    +++ +LEY D+    ++       F    G+ L   +    +++    +    
Sbjct: 176 LIPFGDELKETMLEYVDIRNEMISGR-SDAFFVRENGERLYKNLVYNLVKRNLSKVVTLK 234

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FAT +L+N  +L +++ +LGH  L+TT+IYT+   +     + ++Y Q H
Sbjct: 235 KRSPHVLRHTFATTMLNNDAELGAVKELLGHSSLATTEIYTHTTFEE----LKKVYKQAH 290

Query: 319 PSI 321
           P  
Sbjct: 291 PRA 293


>gi|167580058|ref|ZP_02372932.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis
           TXDOH]
          Length = 323

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 82/301 (27%), Positives = 135/301 (44%), Gaps = 17/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   + +E GLS+ TL +Y  D + F  +LA          ++ +     +  +I+ R  
Sbjct: 38  FCDAMWLEHGLSRNTLDAYRRDLQLFAQWLAARH-----AVSLDRTEKPMLEGYIAARSD 92

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            K    S  R LS  + +  +  +         L + + K++   P  L+E Q   L+  
Sbjct: 93  GK--ATSSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALL-- 148

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                      +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+V
Sbjct: 149 ---AAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLV 205

Query: 201 PLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P        I  Y     P  L       LF   RG  +    F   I++  +   +   
Sbjct: 206 PFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAH 265

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++   HP
Sbjct: 266 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LKALHATHHP 321

Query: 320 S 320
            
Sbjct: 322 R 322


>gi|291457690|ref|ZP_06597080.1| tyrosine recombinase [Bifidobacterium breve DSM 20213]
 gi|291380743|gb|EFE88261.1| tyrosine recombinase [Bifidobacterium breve DSM 20213]
          Length = 339

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 90/345 (26%), Positives = 152/345 (44%), Gaps = 51/345 (14%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           +  +++  L   RGLS  TL++Y CD    L        E   + ++ +++  ++R++++
Sbjct: 6   DVDSFISYLRANRGLSANTLKAYRCDIEACLHLF-----ELRGVVSLNEITLNDLRSWMA 60

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              +      S+ R    ++ F  +  +  +   +    +      N+LP  L E QA  
Sbjct: 61  T-ESHNHARSSMARKTVAVRGFFAWGYEHGVVGVNPAATLMTPSIPNTLPTVLTESQAEQ 119

Query: 137 LVDNVLLHTSHETKWID---------------------------ARNSAILYLLYGCGLR 169
           L+D      + + K  D                            R+ AIL LLY  G+R
Sbjct: 120 LLDCAEHSEALQRKNRDISNDSSADGPHSARGRSADRAREIAERQRDVAILELLYATGIR 179

Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL------ 223
           ++E +SL  +++     T+R+ GKG+K R+VP      +A+ ++ D     L        
Sbjct: 180 VAELVSLDIRDVDFSNRTVRVTGKGNKQRVVPFGLPAEQALQDWIDYGRPALARLAIEKA 239

Query: 224 -------NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
                  + +  LF G+RGK LN  V +  + +  R  G+P   + H LRHS ATH+L  
Sbjct: 240 VPPNGISSDEGALFLGMRGKRLNQRVAREIVHKAAREAGVP-DISPHALRHSAATHMLDG 298

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           G DLR +Q +LGH  L TTQ YT+V+ +     +   Y Q  P  
Sbjct: 299 GADLREVQEMLGHSSLKTTQRYTHVSIEQ----LKNRYGQAFPRA 339


>gi|134096115|ref|YP_001101190.1| tyrosine recombinase xerC [Herminiimonas arsenicoxydans]
          Length = 296

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 145/304 (47%), Gaps = 21/304 (6%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S LT+ SY  D  + L               +  +S+ +IR F ++   + +  RS+ R 
Sbjct: 2   SPLTITSYRRDLLELLALATASDGN----AALSAISHFQIRKFAAQLHAKGLNARSIARK 57

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           LS  + F  +L ++     + +  ++  K++  LP+AL    A+ LV +     + +   
Sbjct: 58  LSAWRGFFTWLSEQNAVASNPVDGIKAPKRNKPLPKALAADDAVRLVSSNSPGKNADAT- 116

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQ-----------NIMDDQSTLRIQGKGDKIRIV 200
           +   N A+  LLY  GLR SE + L  +            I  D     + GKG K+R  
Sbjct: 117 MQLCNRAMFELLYSSGLRASELVGLDLKYAQENRYTSAGWIDFDAHEAMVTGKGSKMRSA 176

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+      A+  +  +    L L+   PLF   RG  ++  V Q  ++   + +GLP+  
Sbjct: 177 PIGQPAIDALKAWLAVRDTLLKLDPH-PLFLSERGTRISARVLQLRLKAHAQAVGLPMDV 235

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
             H LRHSFA+H+L + GDLR++Q +LGH  +S TQIYT+++ +     + ++YD  HP 
Sbjct: 236 HPHVLRHSFASHVLQSSGDLRAVQEMLGHASISATQIYTSLDFQR----LAQVYDAAHPR 291

Query: 321 ITQK 324
             +K
Sbjct: 292 AKKK 295


>gi|68535950|ref|YP_250655.1| integrase/recombinase [Corynebacterium jeikeium K411]
 gi|68263549|emb|CAI37037.1| integrase/recombinase [Corynebacterium jeikeium K411]
          Length = 299

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 87/302 (28%), Positives = 148/302 (49%), Gaps = 16/302 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            ++++L+ ER +S  TL +Y+ D  ++L++L          + +++++ T+I   +   R
Sbjct: 12  AYIRHLKTERDVSVHTLSNYQRDLDRYLVWLGS--------KALQEVTATDIEDHLVYLR 63

Query: 80  TQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +   S  R L+ I+    +            +++    +  S+P+AL+  Q   L+
Sbjct: 64  KDLNLAASSAARGLAAIRGLHSFAHADGRLPFDVAVDVPTPSQGGSIPKALSLAQVEALL 123

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +   +        I+ R+ A+L +LY  G RI+E L L   ++  +Q  L ++GKG K R
Sbjct: 124 NA--VPAGDGASQINIRDRALLEMLYSTGARITELLDLDVDDLDREQRVLLVRGKGGKER 181

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVPL     +A+  Y       LN      LF   RG  L      + + Q     GL  
Sbjct: 182 IVPLGRPALQAVERYLVRARPSLNKKGSPALFLNNRGARLGRQSGFKIVSQAAEAAGLE- 240

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H+LRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V+ ++    + EI+  +H
Sbjct: 241 HVSPHSLRHSFATHLLEGGADIRVVQELLGHASVATTQIYTKVSPEH----LREIWASSH 296

Query: 319 PS 320
           P 
Sbjct: 297 PR 298


>gi|326335596|ref|ZP_08201783.1| integrase/recombinase XerD [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325692362|gb|EGD34314.1| integrase/recombinase XerD [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 297

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 93/307 (30%), Positives = 157/307 (51%), Gaps = 16/307 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  +++   L+IERG+S+ ++ SY  D  +   F+A +  E+  +     +S   +R FI
Sbjct: 4   KLLKDFEHYLKIERGMSENSVHSYLFDMEKLREFVAIHQIEETPV----NISAETLRMFI 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                +++  RS  R +S +KSF K+L       +  +  +   K    LP  L+ ++  
Sbjct: 60  -YEVGKELHARSQSRLISALKSFFKFLLLENYREDFPMETIDTPKFGMKLPDTLSLEEID 118

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            ++  + L T         RN AI+  LYGCGLR+SE ++L   ++   +  +R+ GKG+
Sbjct: 119 AIIAGIDLSTEE-----GHRNRAIIETLYGCGLRVSELVNLHLSDLFFSEGFIRVLGKGN 173

Query: 196 KIRIVPLLPSVRKAILEY--YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R+VP+    +K I  Y  +      +       +F   RGK L   +    I+Q    
Sbjct: 174 KQRLVPISEYTQKEINNYILHQRKNIPIVKEFSDIVFLNRRGKQLTRAMIFTIIKQAASA 233

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +GL  + + HT RHSFATHLL NG +LR+IQ +LGH  + TT+IYT+++      ++ ++
Sbjct: 234 IGLTKTISPHTFRHSFATHLLENGANLRAIQLMLGHESIITTEIYTHID----HSYLSQV 289

Query: 314 YDQTHPS 320
            +  HP 
Sbjct: 290 INTYHPR 296


>gi|94309002|ref|YP_582212.1| site-specific tyrosine recombinase XerC [Cupriavidus metallidurans
           CH34]
 gi|93352854|gb|ABF06943.1| tyrosine-based site-specific tyrosine recombinase XerC [Cupriavidus
           metallidurans CH34]
          Length = 369

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 88/323 (27%), Positives = 145/323 (44%), Gaps = 29/323 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L   R L+  TL SY  D       L            +  L    IR+F ++  
Sbjct: 33  RYLDWLATSRKLAAHTLTSYGHDL----SVLQSQAIRLAPGVALLALETRHIRSFAARLH 88

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNILNMRNLKKSNSLPRALNEKQALTLV 138
              +  R++ R+LS  + F  +  +       + +  +R  K+   LP+AL+ + A+ LV
Sbjct: 89  GNGLSARTIARTLSAWRGFYLWAARHGHGVQSNPVDGVRAPKRGRPLPKALSVEHAVALV 148

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-----------MDDQST 187
            +       +      R+ A+  L Y  GLR+SE + L  +               D + 
Sbjct: 149 AHR-----QDDTNESLRDQAVFELFYSSGLRLSELIQLDVRYTEDGDYRSSGWLDLDGAE 203

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN----IQLPLFRGIRGKPLNPGVF 243
           + + GKG + R VP+     +A+  +  +    L           LF G RG+ L     
Sbjct: 204 VTVLGKGSRRRTVPVGSKAIQALKAWIHVREMMLRPGALPEDAHALFLGTRGRRLPISTV 263

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           Q+ I++     G+P     H LRHSFATH+L + GDLR++Q +LGH  +STTQIYT+++ 
Sbjct: 264 QQRIKRQALAAGVPSDVHPHMLRHSFATHMLQSSGDLRAVQEMLGHASISTTQIYTSLDF 323

Query: 304 KNGGDWMMEIYDQTHPSITQKDK 326
           ++    + ++YDQ HP   +  K
Sbjct: 324 QH----LAKVYDQAHPRAGRASK 342


>gi|212550782|ref|YP_002309099.1| site-specific recombinase XerC [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549020|dbj|BAG83688.1| site-specific recombinase XerC [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 299

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 87/302 (28%), Positives = 152/302 (50%), Gaps = 16/302 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L  ER  S  TL++Y  D  QF  F+  +  E   ++TI   + + IR +I     
Sbjct: 13  FLCHLRYERNYSVRTLKTYCDDLVQFERFV--FCSEGFDMRTI---TSSVIREWIVFLMD 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +    RS+ R LS ++SF +YL +      + +  +  ++    LP  + +++  TL   
Sbjct: 68  RNYSPRSVNRKLSTLRSFFRYLYRNGQIESNPVKGIVGVRTGRPLPYFVRDREMNTL--- 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            LL  S    + D R+  IL + Y  G+R SE + L  ++I  +   +R+ GKG+K R++
Sbjct: 125 -LLDLSKGEGFEDERDRTILEVFYSTGIRCSELVGLNDEDIDFESCLIRVTGKGNKQRLI 183

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR-QLRRYLGLPLS 259
           P      + IL YY     +   ++    F    G+ LN  +  R ++ +L     LP  
Sbjct: 184 PF-SKTLEEILSYYKTIRDETIWDVSKAFFVREDGRSLNYNIVYRIVKKRLSDIPNLPKR 242

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + H LRH+FAT +L+NG +L +++ +LGH  L++T+IYT++  +     + + Y Q HP
Sbjct: 243 -SPHVLRHTFATSMLNNGANLNAVKELLGHSSLASTEIYTHLTFEE----LKKTYKQAHP 297

Query: 320 SI 321
             
Sbjct: 298 RA 299


>gi|221065123|ref|ZP_03541228.1| integrase family protein [Comamonas testosteroni KF-1]
 gi|220710146|gb|EED65514.1| integrase family protein [Comamonas testosteroni KF-1]
          Length = 348

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 89/329 (27%), Positives = 156/329 (47%), Gaps = 30/329 (9%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            +L +   ++L+++ +++ L+  T   Y  D  +         +E +T+Q         I
Sbjct: 14  AQLPEVVHSYLEHVRVQKRLADRTHTLYALDLIKLQSLAQAADQELLTLQ------PAHI 67

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           R F ++  +     R +   LSG +SF ++  +R++   + +  +R  K +  LP+AL  
Sbjct: 68  RRFAAQMHSAGRSARGIALILSGWRSFFRWAAQRELVPFNPVEGVRGPKAAKPLPKALAV 127

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ-----------N 180
             A+ L    +        WI+AR+ A+  LLY CGLR++E + L  +            
Sbjct: 128 DDAVQLASFQI---PDADPWIEARDVAMTELLYSCGLRVAELVGLDLRPDQQSLQQGRGW 184

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL------NLNIQLPLFRGIR 234
           I  +     +QGKG K RIVP+     +A+  +  L    L          +  LF G R
Sbjct: 185 IDLEAGDAHVQGKGSKRRIVPVGRMAIEALQRWLALRSSALTGAAQFKAQDETALFIGRR 244

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G+ L        ++Q  +  GL      H LRHSFA+H+L + GDLR++Q +LGH  ++T
Sbjct: 245 GERLGGHSVWSRLKQRGQRAGLASGVHPHVLRHSFASHMLQSSGDLRAVQELLGHASIAT 304

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
           TQIYT ++ ++    + + Y++ HP   +
Sbjct: 305 TQIYTRLDFQH----LAQAYEKAHPRAQR 329


>gi|315655029|ref|ZP_07907933.1| integrase/recombinase XerD [Mobiluncus curtisii ATCC 51333]
 gi|315490685|gb|EFU80306.1| integrase/recombinase XerD [Mobiluncus curtisii ATCC 51333]
          Length = 323

 Score =  238 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 102/331 (30%), Positives = 159/331 (48%), Gaps = 18/331 (5%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY-TEEKIT 59
           M  NN   + + E+  +   WL    + RGLS  T+++Y  D R+ + FL    + +  T
Sbjct: 1   MSENNPAAVFAEEITADFGQWL---SVNRGLSPQTVRAYLTDLRELMTFLVDSDSGDGPT 57

Query: 60  IQTIRQ--LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
            Q +R    +   IRA++       +   +L R ++  ++F  + + R I       N+R
Sbjct: 58  AQQLRVDLANPARIRAWLGAMSRAGMSRATLARRVASFRTFSSWAQVRDIVPGDAGQNLR 117

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETK----WIDARNSAILYLLYGCGLRISEA 173
            ++  N+LP  L+   A  L++   +    E       +  R+ A L LLY  G+R+SE 
Sbjct: 118 AMRPDNALPTVLSATDAAHLLETARVAAYPEASTAPNPVKLRDWAALELLYATGIRVSEL 177

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL---F 230
             L   NI   Q T+R+ GKGDK R+VP       A+ EY +     L    +  L   F
Sbjct: 178 TGLELGNINKSQRTIRVTGKGDKQRVVPYGIPAGLALEEYLEKGRPALVNPEKPALNRVF 237

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
            G +G  L+  + +  + +L    G+P     H LRH+ ATHLL  G DLRS+Q ILGH 
Sbjct: 238 LGAKGGMLDTRIVRGMLHRLTAQAGVP-DLGPHGLRHTAATHLLDGGADLRSVQEILGHA 296

Query: 291 RLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            L+TTQ YT+++     D +  +Y Q HP  
Sbjct: 297 SLATTQRYTHLS----MDKLRAVYLQAHPRA 323


>gi|304384441|ref|ZP_07366845.1| tyrosine recombinase XerC [Prevotella marshii DSM 16973]
 gi|304334461|gb|EFM00750.1| tyrosine recombinase XerC [Prevotella marshii DSM 16973]
          Length = 301

 Score =  238 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 74/304 (24%), Positives = 135/304 (44%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L+ E+  S  T+QSY+ D ++F  ++     +     +   +    IR ++  
Sbjct: 9   VDQFLSYLQYEKRYSPRTVQSYDEDLKEFEAYIKVQGND----LSWHSVDADVIRGWMES 64

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     ++ R LS ++SF ++   R + +      +   KK   LP+ + E +   L
Sbjct: 65  MMDKGNVATTINRRLSALRSFYRFSLSRNLVSHDPAHAVVGPKKEKPLPQFVKETEMDEL 124

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            D           + D R   IL   Y  G+R+SE   L   +I    S LR+ GK +K 
Sbjct: 125 FDKNR----WGDTFKDVRARTILLTFYSSGIRVSELTGLHVSDIDFASSELRVTGKRNKQ 180

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R++P    + + ++ Y  +       +    LF   +G+P+     Q  +++    +   
Sbjct: 181 RVIPFGEELAEQLVRYLAIREVTAGYDT-DALFITEKGRPMTMSQVQYEVKKYLGRVCTL 239

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FAT +L++G  L S++ +LGH  LSTT+IYT+   +     +  +Y   
Sbjct: 240 KKRSPHVLRHTFATAMLNHGAGLESVKKLLGHESLSTTEIYTHTTFEQ----LKNVYTNA 295

Query: 318 HPSI 321
           HP  
Sbjct: 296 HPRA 299


>gi|68536254|ref|YP_250959.1| integrase/recombinase [Corynebacterium jeikeium K411]
 gi|260578954|ref|ZP_05846857.1| tyrosine recombinase XerC [Corynebacterium jeikeium ATCC 43734]
 gi|68263853|emb|CAI37341.1| integrase/recombinase [Corynebacterium jeikeium K411]
 gi|258602928|gb|EEW16202.1| tyrosine recombinase XerC [Corynebacterium jeikeium ATCC 43734]
          Length = 301

 Score =  238 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 81/308 (26%), Positives = 138/308 (44%), Gaps = 18/308 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L     ++ Q+L    G S+ T+++Y  +    L            ++ I +      R 
Sbjct: 12  LWSALDDYEQHLRHVVGRSENTIRAYRQNLDSALE----------GLERIEEFDLDRARD 61

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            +           SL R  S ++ F  +L  R     + +  ++  K   +LPR L   Q
Sbjct: 62  VLGWAVDNGASRASLSRLASSMRGFGAFLAHRGFVQANPVAALKAPKPQRTLPRVLRSDQ 121

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           A  ++ N L            R+ A++ LLY  G+R+SE       ++      LR+ GK
Sbjct: 122 ASDML-NGLQPEGDAATPSAIRDWAMVELLYATGIRVSELTGCDVNDVDFSNRLLRVTGK 180

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R+VP   +V  A+ ++ ++   +        LF G+RGK ++P   +  + +    
Sbjct: 181 GNKTRVVPFGGTVVAALEKWLEVR--EDMAKETPALFVGVRGKRIDPRQVRTVVNR-VTQ 237

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G     + H LRHS AT +L  G DLR +Q +LGH  +STTQIYT+V ++     +  +
Sbjct: 238 AGPGPRLSPHGLRHSAATAILEGGADLRVVQELLGHANMSTTQIYTHVGTER----LKAV 293

Query: 314 YDQTHPSI 321
           ++Q HP  
Sbjct: 294 FNQAHPRA 301


>gi|34541361|ref|NP_905840.1| integrase/recombinase XerD [Porphyromonas gingivalis W83]
 gi|34397678|gb|AAQ66739.1| integrase/recombinase XerD [Porphyromonas gingivalis W83]
          Length = 308

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 89/303 (29%), Positives = 149/303 (49%), Gaps = 16/303 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +   L +E  L+  ++ +Y  D  +   +L   T E I+    R++SY  ++ F+++ 
Sbjct: 8   KRYKSYLSLELHLTPNSVDAYLKDLSKLDSYL---TAENIS---FREVSYENLQHFVAEL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               I  RS+ R +SG+KSF ++L   +         +   +    LP  L  ++   L+
Sbjct: 62  YDLGISARSIARIISGVKSFFRFLVLEEYIEADPTELLEGPRIGVHLPTVLTIEEVDRLI 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                 +         RN AIL +LY CGLR+SE  SL   N+  ++S LRI GKG K R
Sbjct: 122 -----GSIDPAAQGAQRNRAILEILYSCGLRVSELTSLKFSNLFLNESFLRIDGKGRKQR 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+  +    +  Y          L  +  +F   RGK ++  +    I++L    G+ 
Sbjct: 177 LVPMSETAITELKRYLSDPERPTPVLGQEEYVFLSNRGKAISRIMVFVMIKKLAEEAGIT 236

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            S + HT RHSFATHLL  G +L++IQ +LGH  ++TT+IYT+++ +     +    +  
Sbjct: 237 KSISPHTFRHSFATHLLEGGANLQAIQLMLGHENIATTEIYTHIDRETLRHEI----ETY 292

Query: 318 HPS 320
           HP 
Sbjct: 293 HPR 295


>gi|224282694|ref|ZP_03646016.1| site-specific tyrosine recombinase XerC [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 334

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 91/340 (26%), Positives = 150/340 (44%), Gaps = 46/340 (13%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           +   +L  L   RGLS  T+++Y  D R+ L  LA        I  +RQ++  ++R +++
Sbjct: 6   DLSAFLAYLRANRGLSGNTVKAYGTDVRECLHALASR-----GIADLRQVTTDDLRGWMA 60

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              T+     S+ R +  ++SF  +  +           +   K  ++LP  L E QA  
Sbjct: 61  F-ETRDHARSSMARKVVSVRSFFAWAHEHGRIEADPAAVLMTPKLPDTLPSVLTEAQAER 119

Query: 137 LVDNVLLHTS-----------------------------HETKWIDARNSAILYLLYGCG 167
           L+D V    S                                + +  R++A+L LLY  G
Sbjct: 120 LMDRVDDDASLHAASSQRYETRHDEMPRLDSAHRGEGMSQRDEVVALRDAAMLELLYATG 179

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY------YDLCPFDL 221
           +R++E + L   ++     T+R+ GKG K R+VP      KA+  +        L     
Sbjct: 180 IRVAELVGLDIGDVDWSHRTIRVTGKGSKQRVVPFGDPAEKALAGWKEHGRPLILRRAGA 239

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
                  LF G+RG+ ++  + +  + +  R  G+P   + H+LRHS ATH+L  G DLR
Sbjct: 240 GTLDTAALFLGMRGRRIDQRIVRDVVHRAARESGVP-DISPHSLRHSAATHMLDGGADLR 298

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            +Q +LGH  L TTQ YT+V+ +     + E Y Q  P  
Sbjct: 299 EVQEMLGHSSLRTTQRYTHVSIEQ----LKERYRQAFPRA 334


>gi|145590194|ref|YP_001156791.1| phage integrase family protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145048600|gb|ABP35227.1| tyrosine recombinase XerC subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 333

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 90/335 (26%), Positives = 159/335 (47%), Gaps = 33/335 (9%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           + +L    Q +L  L + R LS  TL++Y  D      F    + E      + ++S   
Sbjct: 5   ATDLHPLMQEYLHELHVLRQLSPHTLKAYGMDLSDLQNFALEDSVE------LLKVSNGH 58

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE------------SNILNMRN 118
           +R +  +  ++    RS+ R+LS  + +  +L ++    +            + + +++ 
Sbjct: 59  VRRWAGRLHSKGKSSRSIARALSAWRGWYDWLTEKDARRDARAGKVTNNLIANPVDDVKA 118

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            K+  SLP+AL+ +QAL LV+  +     +      R++AI+ LLY  GLR+SE L +  
Sbjct: 119 PKRLKSLPKALSVEQALALVNQAVKEAEEKKDLESIRDAAIIDLLYSSGLRLSELLGIDV 178

Query: 179 QNI-----------MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
                           D + + + GKG K R VP+     K++  + +L          +
Sbjct: 179 MQSKDRQHESAGWLDWDAAEVTVLGKGGKRRSVPVGVPAMKSLAVWRELRDAGSYSEESI 238

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
            LF    GK L+P   Q  +R L    GLP     H +RHSFA+H+L +  DLR++Q +L
Sbjct: 239 ALFLSATGKRLSPRTVQARLRTLAMRAGLPTHVHPHMMRHSFASHVLQSSQDLRAVQEML 298

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           GH  +++TQIYT+++ ++    + + YD+ HP   
Sbjct: 299 GHASIASTQIYTSLDFQH----LAQAYDKAHPRAK 329


>gi|83748651|ref|ZP_00945669.1| Integrase/recombinase (XerC/CodV family) [Ralstonia solanacearum
           UW551]
 gi|207741931|ref|YP_002258323.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum
           IPO1609]
 gi|83724695|gb|EAP71855.1| Integrase/recombinase (XerC/CodV family) [Ralstonia solanacearum
           UW551]
 gi|206593317|emb|CAQ60244.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum
           IPO1609]
          Length = 329

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 91/324 (28%), Positives = 155/324 (47%), Gaps = 29/324 (8%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           +   +L  L+ ER LS  TL++Y  +       L        T   + +L    IR+ I+
Sbjct: 19  QIAAYLDVLKFERQLSPHTLENYTREL----AVLQRLGARFATGIDLTRLLPHHIRSMIA 74

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNILNMRNLKKSNSLPRALNEKQAL 135
                 +  RS+ R+LS  + + K+L  R+   T + +  +R  K    LP+AL+ +QA+
Sbjct: 75  HLHGNGLSGRSIARALSVWRGWYKWLALREAAVTANPVDGVRAPKSPKRLPKALSVEQAV 134

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-----------MDD 184
            L++ +        +     + A+  L Y CGLR+SE + L  +++             +
Sbjct: 135 ALMEQLPGDDPETIR-----DRAVNELFYSCGLRLSELVGLDLRHVKAGDYASAGWLDLE 189

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF----DLNLNIQLPLFRGIRGKPLNP 240
              + + GKG+K R VP+     +A+  +    P     D        LF   RGK L  
Sbjct: 190 AREVMVLGKGNKYRTVPVGSKAAEALAAWLAARPQLARPDAAPEDAHALFLSARGKRLTQ 249

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              Q  +++     G+P     H LRHSFATH+L + GDLR++Q +LGH  +++TQ+YT+
Sbjct: 250 RQIQIRMKRNAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTS 309

Query: 301 VNSKNGGDWMMEIYDQTHPSITQK 324
           ++ ++    + +IYDQ HP   +K
Sbjct: 310 LDFQH----LAKIYDQAHPRAKKK 329


>gi|91786958|ref|YP_547910.1| phage integrase [Polaromonas sp. JS666]
 gi|91696183|gb|ABE43012.1| phage integrase [Polaromonas sp. JS666]
          Length = 358

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 80/324 (24%), Positives = 148/324 (45%), Gaps = 25/324 (7%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            E     + +L+++ +E+ L+  T++ Y  D  +                 + ++  T +
Sbjct: 20  PESHPLVERYLEHVRVEKRLASRTVELYALDLHKLEANARQAG------VALTEVHSTHM 73

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           R ++++        R +   LSG + F  +L +  +   + + ++R+ K +  LP+AL+ 
Sbjct: 74  RRWVAQMHGAGRSGRGIALILSGWRGFYAWLGREGLVPANPVQDVRSPKVAKPLPKALSV 133

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL--- 188
            +A+ L          +   ++AR+  I  LLYGCGLRI E + L  +     +  +   
Sbjct: 134 DEAVQLASYQ--SDDEDDPHLEARDQCITELLYGCGLRIGELVGLDVRASAQARGWVDMD 191

Query: 189 ----RIQGKGDKIRIVPLLPSVRKAILEY------YDLCPFDLNLNIQLPLFRGIRGKPL 238
                + GKG K R VP+     +A+  +      +              LF   RG  L
Sbjct: 192 AAEAHVLGKGSKRRSVPVGRQALQALHAWLALRGDWAGEGAAAEGAAGQALFISQRGARL 251

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            P   +  +++     GL      H LRHSFA+H+L + GDLR++Q +LGH  ++TTQ+Y
Sbjct: 252 TPQHIRLRLKRRSLKAGLATPVHPHMLRHSFASHVLQSSGDLRAVQELLGHANITTTQVY 311

Query: 299 TNVNSKNGGDWMMEIYDQTHPSIT 322
           T ++ ++    + ++YD  HP  T
Sbjct: 312 TRLDFQH----LAKVYDAAHPRAT 331


>gi|71274794|ref|ZP_00651082.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71897599|ref|ZP_00679844.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71902531|ref|ZP_00684453.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71164526|gb|EAO14240.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71727745|gb|EAO30016.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71732502|gb|EAO34555.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
          Length = 324

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 93/308 (30%), Positives = 144/308 (46%), Gaps = 24/308 (7%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L  L I+ GLS+ TL SY  D      +             +  L+   +  +++ R  Q
Sbjct: 31  LDALWIKHGLSRHTLNSYRRDLEGLARWNNGRAG------PLATLTPPALLDYLTWRTQQ 84

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                S  R LS +++F  Y  +     ++    + +    + LP+AL E Q   L+   
Sbjct: 85  HYSPLSNARLLSVLRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQIEALLAAP 144

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
            + T         RN A+L L+Y  GLR+SE ++L    +   Q  LRI GKG K R+VP
Sbjct: 145 SIETPE-----GLRNRAMLELMYAAGLRVSELVTLPVAMLNRRQGVLRITGKGGKERLVP 199

Query: 202 LLPSVRKAILEYYDLCPFDLNLNI--------QLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           L    +  +  Y +     L  +          +PLF     K L+   F R+I+     
Sbjct: 200 LGEESQHWLQRYLEQARPSLAADKPIPADSDGDVPLFINTNLKRLSRQQFWRWIKHYAAL 259

Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+ P   + H LRHSFATHLL++G DLR++Q +LGH  +STTQIYT +  ++    + +
Sbjct: 260 AGIAPNKVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTLIARQH----LQQ 315

Query: 313 IYDQTHPS 320
           ++ Q HP 
Sbjct: 316 LHAQHHPR 323


>gi|311113476|ref|YP_003984698.1| tyrosine recombinase XerC [Rothia dentocariosa ATCC 17931]
 gi|310944970|gb|ADP41264.1| tyrosine recombinase XerC [Rothia dentocariosa ATCC 17931]
          Length = 356

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 91/319 (28%), Positives = 153/319 (47%), Gaps = 13/319 (4%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P +     L   +++ + L  E+  S+ T++SY  D   F  F+         I  +  +
Sbjct: 47  PALSGEVFLPIVEHFERYLRYEKYRSEETIRSYISDLCGFFGFIGRR-----GISRVEDV 101

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           +   IR ++     ++    ++ R  S +++F  +  + ++ TE+    M   K+   LP
Sbjct: 102 NLQLIREWLGSMHLKQNAKTTVARRGSTLRTFFSWAHEEELITENPTRGMSTPKRDRHLP 161

Query: 127 RALNEKQALTLVDNVLLHT-SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
             L+++Q  +++D V L    +       R  A+L +LY  G+RISE   L   ++    
Sbjct: 162 AVLSQEQMSSVLDTVALRCRENPQDIRMLRLWAVLEVLYSSGMRISELTGLNLSSVDRAN 221

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLC---PFDLNLNIQLPLFRGIRGKPLNPGV 242
            T+R+ GKG+K R+VPL     K + ++  +               LF G RGK  NP  
Sbjct: 222 KTVRVIGKGNKERVVPLGTPAMKVLSQWVKIGRPYWIAKGSRDVTALFIGPRGKRANPRQ 281

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +  I ++ R L     + AH LRHS ATHL+  G D+R++Q +LGH  LSTTQIYT+V+
Sbjct: 282 IREDISRILRTLENTEVSGAHVLRHSAATHLVDGGADIRTVQELLGHASLSTTQIYTHVS 341

Query: 303 SKNGGDWMMEIYDQTHPSI 321
            K     + + Y + HP  
Sbjct: 342 MKR----LADTYIRAHPRA 356


>gi|239813909|ref|YP_002942819.1| integrase family protein [Variovorax paradoxus S110]
 gi|239800486|gb|ACS17553.1| integrase family protein [Variovorax paradoxus S110]
          Length = 356

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 79/324 (24%), Positives = 150/324 (46%), Gaps = 28/324 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L+++ +ER L+  T++ Y    +      A           + ++    IR ++++
Sbjct: 13  VDKYLEHVRVERRLAARTVELYAIHLQALAANAAEAG------LPLDRVQTAHIRRWMAQ 66

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                   R +   LS  +SF ++L    +   + + ++   K +  LP+AL    A+ L
Sbjct: 67  LHGAGREPRGIALVLSCWRSFYRWLGNEGLVGFNPVKDVHAPKAARPLPKALAVDDAVRL 126

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-------RI 190
            +   L+      W +AR+ AI+ +LYGCGLR+SE   L  +     +  +        +
Sbjct: 127 AE---LYDPEADPWTEARDGAIVEVLYGCGLRVSELTGLDARASNTARGWVDLDALEANV 183

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--------PLFRGIRGKPLNPGV 242
            GKG K RIVP+     +A+ +++ +      L+            LF   +G  ++   
Sbjct: 184 LGKGSKRRIVPIGSKAAEALRDWFAVRGECAALSTAALRDPAGAAALFISAKGVRMSSQA 243

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             + +R+     GL      H LRHSFA+H+L +  DLR++Q +LGH  ++TTQ+YT ++
Sbjct: 244 VWKLLRERSLKAGLAAPVHPHMLRHSFASHVLQSSSDLRAVQELLGHANIATTQVYTRLD 303

Query: 303 SKNGGDWMMEIYDQTHPSITQKDK 326
            ++    + ++YD  HP    + +
Sbjct: 304 FQH----LAKVYDAAHPRAQARPE 323


>gi|255068446|ref|ZP_05320301.1| tyrosine recombinase XerC [Neisseria sicca ATCC 29256]
 gi|255047288|gb|EET42752.1| tyrosine recombinase XerC [Neisseria sicca ATCC 29256]
          Length = 303

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 82/318 (25%), Positives = 155/318 (48%), Gaps = 18/318 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +++ +       +L+ L  ++G S  TL +Y  D  + +  L      K + +T + L  
Sbjct: 1   MLARDFGLSLDGYLKMLG-QQGKSAHTLSAYGRDLTELVRLLT-----KGSSETAQDLKR 54

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            +  A + +   Q + +R+L R LS  + +  +L +  +       N++  +    LP+A
Sbjct: 55  RDFVAALKRLSQQGLSERTLARKLSAWRQYCGWLVQSGMMDNDPTFNLKASRLPERLPKA 114

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L +++   ++D     ++     +  R+ A+  L+YG GLR+SE   L   +++ D+  +
Sbjct: 115 LPQEELNHMLD-----SAPADDSLAVRDHALFELMYGSGLRLSEIHGLDLGDVLLDEGWV 169

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +PL     +A+  Y       +  + +  LF G  G  L     Q+ ++
Sbjct: 170 SVTGKGRKERQIPLSGKSVEALRAYLSER---VAADGETALFTGKNGTRLGQRQIQKRLQ 226

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                 G     + H +RHS+A+HLL +  D+R++Q +LGH  LSTTQIYT ++     D
Sbjct: 227 AWAVQQGSGQHISPHMMRHSYASHLLQSSRDIRAVQELLGHSNLSTTQIYTKLDF----D 282

Query: 309 WMMEIYDQTHPSITQKDK 326
            + ++YD+ HP   +K +
Sbjct: 283 HLAKVYDEGHPRAKRKSE 300


>gi|319441371|ref|ZP_07990527.1| integrase/recombinase [Corynebacterium variabile DSM 44702]
          Length = 313

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 84/325 (25%), Positives = 142/325 (43%), Gaps = 31/325 (9%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
               +L+ L++ +G S  T+++Y  D R               ++T+   +    R  + 
Sbjct: 4   AIDGYLEYLDLVKGRSANTVRAYGADLRAAFE----------GVRTLDGFTLDHCRDVLD 53

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                     +L R  S ++ F  +L    +   +    ++  K S +LPR L E Q   
Sbjct: 54  WAVENGDAKATLARIASSLRGFGSWLVHTGVLQVNPAAGLQTPKTSRTLPRVLREDQVGG 113

Query: 137 LVDNVLLHTSHET-------KWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQ 185
           +++    H   E           D R+  +L +LY  G+R+SE      ++         
Sbjct: 114 VLEQARAHAHREPSEGDPGPTPKDIRDWVMLEVLYATGIRVSELAGADVEDLGGNGDPGS 173

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-----IQLPLFRGIRGKPLNP 240
            +LR+ GKGDK R+VP  P+V  A+ E+  +    L  +      Q  LF G RG  ++ 
Sbjct: 174 RSLRVVGKGDKTRVVPFGPTVEAALHEWLAVRAGMLPASGVTRAAQPALFLGARGGRIDV 233

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              +  + +     G+P     H LRHS AT +L  G DLR +Q +LGH  ++TTQIYT+
Sbjct: 234 RQVRTVVHRATGGAGVP-EIAPHGLRHSAATAVLDGGADLRVVQQLLGHTSMNTTQIYTH 292

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKD 325
           V ++     +  +Y + HP    +D
Sbjct: 293 VGTER----LRVVYKRAHPRSGSQD 313


>gi|51473985|ref|YP_067742.1| site-specific tyrosine recombinase XerC [Rickettsia typhi str.
           Wilmington]
 gi|81389926|sp|Q68VT2|XERC_RICTY RecName: Full=Tyrosine recombinase xerC
 gi|51460297|gb|AAU04260.1| DNA integrase/recombinase XerC [Rickettsia typhi str. Wilmington]
          Length = 305

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 117/311 (37%), Positives = 184/311 (59%), Gaps = 9/311 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++   + +  + W + L ++R  S  T+ +Y  D + FL F+ +Y  E +TI  I+ +  
Sbjct: 1   MLDISIQELIKQWQKYLILQRNYSNNTVIAYNNDLKHFLEFMNYYNSELVTINHIKTVDI 60

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             IR++++KR+ +     S+ R LS +K+F K+L+K  +     I ++++ KK+  LP+A
Sbjct: 61  RLIRSWLAKRKYENFTASSIARGLSTVKNFYKFLEKTILLNSHIIFSIKSPKKAKLLPKA 120

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+    L  +++  +      KW++ RN A+L L+Y  GLRISEALS+T  + + +   +
Sbjct: 121 LSVDDVLISLEH--IEGYGNVKWVELRNKALLVLIYAAGLRISEALSITKLH-LQNLEFI 177

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           +I GKG K RI+P LP  R  I +Y  + P+ L+ N   P+FRG  GK L P VF R + 
Sbjct: 178 KIIGKGSKERIIPWLPFARNLITKYLGILPYKLDENE--PIFRGKHGKKLQPSVFNRELI 235

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L+R  GLP   TAH+ RHSFA+HLL  G DLRSIQ +LGH  LSTTQ YT  + K+   
Sbjct: 236 KLKRVYGLPEYLTAHSFRHSFASHLLEYGADLRSIQELLGHKSLSTTQKYTQTSIKH--- 292

Query: 309 WMMEIYDQTHP 319
            +  +Y+  +P
Sbjct: 293 -LEAVYNTAYP 302


>gi|320527482|ref|ZP_08028663.1| putative site-specific tyrosine recombinase XerC [Solobacterium
           moorei F0204]
 gi|320132195|gb|EFW24744.1| putative site-specific tyrosine recombinase XerC [Solobacterium
           moorei F0204]
          Length = 307

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 91/316 (28%), Positives = 146/316 (46%), Gaps = 21/316 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
             K    +L+ +   R  SK T  +Y  D  +FL +L  +      I +   ++ T++  
Sbjct: 3   FEKSLDRFLRQIARVRTGSKDTENAYRRDVERFLEYLREHR-----IDSFEHVTKTDVSD 57

Query: 74  FISKRRT-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           +I++ R      + + + S  R+LS +KSF +YL + +    + +   +       LP  
Sbjct: 58  YITQLRDGEIGGKPLSNSSYARNLSSLKSFYRYLNRFEGIKANPVRIFKGGSIRRKLPEF 117

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L   Q  T+++   LH       +  RN  I+ ++Y CGLR+SE   L   +I   +  L
Sbjct: 118 LTFDQMETMLNQFDLHDP-----VQIRNRCIIEVMYACGLRVSECAGLKISSINLVEGFL 172

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            + GK  K R+VP  P  ++ I  Y +     F         LF    G+P++    Q  
Sbjct: 173 TVLGKESKERMVPFYPRCKQLIQYYMNNARGTFMEKTQEHDILFVNQNGRPISARSIQLI 232

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
             +      LP+    H +RHSFATH+L NG DLR +Q +LGH  L TTQIYT+V     
Sbjct: 233 CEKAGEDANLPIHIHPHMIRHSFATHMLDNGADLRIVQELLGHENLGTTQIYTHVTQ--- 289

Query: 307 GDWMMEIYDQTHPSIT 322
            D + ++ D+ HP   
Sbjct: 290 -DRLRKVVDEAHPHSK 304


>gi|260578657|ref|ZP_05846565.1| integrase/recombinase XerD [Corynebacterium jeikeium ATCC 43734]
 gi|258603154|gb|EEW16423.1| integrase/recombinase XerD [Corynebacterium jeikeium ATCC 43734]
          Length = 299

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 87/302 (28%), Positives = 147/302 (48%), Gaps = 16/302 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            ++++L+ ER +S  TL +Y+ D  ++L++L          + +++++ T+I   +   R
Sbjct: 12  AYIRHLKTERDVSVHTLSNYQRDLDRYLVWLGS--------KALQEVTATDIEDHLVYLR 63

Query: 80  TQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +   S  R L+ I+    +             ++    +  S+P+AL+  Q   L+
Sbjct: 64  KDLNLAASSAARGLAAIRGLHSFAHTDGRLAFDVAADVPTPSQGGSIPKALSLAQVEALL 123

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +   +        I+ R+ A+L +LY  G RI+E L L   ++  +Q  L ++GKG K R
Sbjct: 124 NA--VPAGDGASQINIRDRALLEMLYSTGARITELLDLDVDDLDREQRVLLVRGKGGKER 181

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVPL     +A+  Y       LN      LF   RG  L      + + Q     GL  
Sbjct: 182 IVPLGRPALQAVERYLVRARPSLNKKGSPALFLNNRGARLGRQSGFKIVSQAAEAAGLE- 240

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H+LRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V+ ++    + EI+  +H
Sbjct: 241 HVSPHSLRHSFATHLLEGGADIRVVQELLGHASVATTQIYTKVSPEH----LREIWASSH 296

Query: 319 PS 320
           P 
Sbjct: 297 PR 298


>gi|50085725|ref|YP_047235.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1]
 gi|49531701|emb|CAG69413.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1]
          Length = 305

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 158/305 (51%), Gaps = 14/305 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+   I+   S+ TL +Y+ D   F  F      E      + Q+  +++R +++ R  
Sbjct: 11  WLKERMIQNQ-SEHTLNAYQRDLTDFFDFCEKRKLE------LMQVEASDLREYLAYRVE 63

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           Q  +   S++R LS I+ F+K+ ++ +    + + + +  +KS  LP  ++ +    ++D
Sbjct: 64  QSNLSSSSIQRHLSSIRQFMKWAQQSQFLNMNPVEDFKLKRKSRPLPGMIDIETVHQILD 123

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                    T+ +  R+ AIL LLY  GLR++E   L   ++  ++  LR+ GKG+K R+
Sbjct: 124 QTAPEDELGTQ-LWLRDKAILELLYSSGLRLAELQGLKLIDLDFNRQLLRVTGKGNKTRV 182

Query: 200 VPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +P     +++++++ +    +      Q PLF    G  L P   +  ++      G+ +
Sbjct: 183 IPFGKKAKQSLIDWLNVYRLWKGQFTQQDPLFVSQNGGALTPRQIENRVKHQALRAGVNV 242

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRH FA+H+LS  GDLRS+Q +LGH  LSTTQIYT+++     D + ++YD+ H
Sbjct: 243 DLHPHLLRHCFASHMLSASGDLRSVQEMLGHSNLSTTQIYTHIDF----DHLAQVYDRAH 298

Query: 319 PSITQ 323
           P   +
Sbjct: 299 PRAQK 303


>gi|241766196|ref|ZP_04764098.1| tyrosine recombinase XerD [Acidovorax delafieldii 2AN]
 gi|241363726|gb|EER59095.1| tyrosine recombinase XerD [Acidovorax delafieldii 2AN]
          Length = 299

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 77/307 (25%), Positives = 146/307 (47%), Gaps = 15/307 (4%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L     ++  L +E GL++ TL +Y  D   +  +LA    ++     +   +   ++A+
Sbjct: 6   LAAIDTFVDALWLEDGLARNTLAAYRRDLTLYATWLA----QQQPALALDSTAEHHLQAY 61

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
            ++R  Q     S  R L+ ++ +  +  + +  +    + ++  ++   +P+ L++ Q 
Sbjct: 62  FAERHAQTRA-TSANRRLTVLRRYFHWALRERRISADPTVRLQAARQPLRVPKTLSQAQV 120

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+     +       +  R+  +L L+Y  GLR++E ++L    +   +  LR+ GKG
Sbjct: 121 EALL-----NAPDVGSALGLRDRTMLELMYASGLRVTELVTLKTYQLGLAEGVLRVMGKG 175

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            K R+VP     R  I  Y        L       LF   RG  +   +F   +++    
Sbjct: 176 SKERLVPFGEEARNWIERYLHEARGAILGGQQTDDLFVTHRGAGMTRVMFWVIVKKWAAV 235

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+ +  + HTLRH+FATHLL++G DLR +Q +LGH  +STT IYT+V  +     +  +
Sbjct: 236 AGITVPLSPHTLRHAFATHLLNHGADLRVVQLLLGHVDISTTTIYTHVARER----LKAL 291

Query: 314 YDQTHPS 320
           +++ HP 
Sbjct: 292 HERHHPR 298


>gi|190893664|ref|YP_001980206.1| tyrosine site-specific integrase/recombinase [Rhizobium etli CIAT
           652]
 gi|190698943|gb|ACE93028.1| tyrosine site-specific integrase/recombinase protein [Rhizobium
           etli CIAT 652]
          Length = 383

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 94/318 (29%), Positives = 148/318 (46%), Gaps = 18/318 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             +++L+ +  ERG +  TLQSYE D      FL   +        + + +  ++ A+++
Sbjct: 74  HVESFLEMMSAERGAAANTLQSYERDLDDIRSFLNGRSIR------LTEAASADLSAYLA 127

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               Q     S  R L+ ++ F K+L    I T+     +   KK   LP+ +  ++   
Sbjct: 128 SLARQGFKPSSQARRLAAMRQFYKFLYAEGIRTDDPTGVLDAPKKGRPLPKTMGVEEVSR 187

Query: 137 LVDNVLLHTSHETK--WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           L+                  R  A+L LLY  G+R+SE +SL  + +  +   L I+GKG
Sbjct: 188 LLSQAQAEADDPAPGQLQRLRMLALLELLYATGMRVSELVSLPARVLDQEGRFLMIRGKG 247

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFD----LNLNIQLPLFRG-IRGKPLNPGVFQRYIRQ 249
           +K R+VPL  S  KA+  Y  L   +            LF    +   L   VF R ++ 
Sbjct: 248 NKERLVPLSQSAIKALKSYGRLLAAENAAAKEPQESPFLFSAASKEGYLPRQVFARDLKN 307

Query: 250 LRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           L    GL  S  + H +RH+FA+HLL+NG DLR +Q +LGH  +STTQIYT+V  +    
Sbjct: 308 LAIRAGLTPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER--- 364

Query: 309 WMMEIYDQTHPSITQKDK 326
            + ++    HP   Q  K
Sbjct: 365 -LQQLVQTHHPLAKQAKK 381


>gi|187250446|ref|YP_001874928.1| integrase family protein [Elusimicrobium minutum Pei191]
 gi|186970606|gb|ACC97591.1| Integrase family protein [Elusimicrobium minutum Pei191]
          Length = 291

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 83/302 (27%), Positives = 133/302 (44%), Gaps = 17/302 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++   L  ER LSK T+ +Y  D   F  F              + +    I  +I   +
Sbjct: 5   DFKNYLSFERQLSKNTIYAYTNDVGDFFAFCEENN------TAPQNVRPDFIDEYIYHLK 58

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +  +S+ R    +KSF KYL       E     + + K +  +P  L +++   L+ 
Sbjct: 59  QKGLSPKSVFRKTQAVKSFYKYLIINGDIKEDPCRFLLSPKLTQKIPETLTKEEISRLL- 117

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                +     + + R   IL L Y CGLR+SE +SL  +++      +   GKG K R 
Sbjct: 118 -----SFPPKTFAEIRTLTILELFYACGLRVSELVSLRIESVNLKDKWVLAYGKGAKQRF 172

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +P+     K +  Y       L        +F    GK ++     + +  L R  G+  
Sbjct: 173 IPIHDRAVKVLEIYLSEREKYLKGKESASEIFINKNGKKISRMSVWKDVNDLGRLAGIER 232

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           S   H  RH+FATHLL  G DLRS+Q +LGH  L TTQIYT+++ ++    + E + + H
Sbjct: 233 SLHPHLFRHTFATHLLIGGADLRSLQEMLGHADLQTTQIYTHLDVQS----LKEKHKKFH 288

Query: 319 PS 320
           P 
Sbjct: 289 PR 290


>gi|83720485|ref|YP_441282.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis
           E264]
 gi|257140051|ref|ZP_05588313.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis
           E264]
 gi|83654310|gb|ABC38373.1| tyrosine recombinase XerD [Burkholderia thailandensis E264]
          Length = 333

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 82/301 (27%), Positives = 135/301 (44%), Gaps = 17/301 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   + +E GLS+ TL +Y  D + F  +LA          ++ +     +  +I+ R  
Sbjct: 48  FCDAMWLEHGLSRNTLDAYRRDLQLFAQWLAARH-----AVSLDRTERPMLEGYIAARSD 102

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            K    S  R LS  + +  +  +         L + + K++   P  L+E Q   L+  
Sbjct: 103 GK--ATSSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALL-- 158

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                      +  R+  +L L+Y  GLR+SE ++L    +  ++  +R+ GKG K R+V
Sbjct: 159 ---AAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLV 215

Query: 201 PLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P        I  Y     P  L       LF   RG  +    F   I++  +   +   
Sbjct: 216 PFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAH 275

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  ++   HP
Sbjct: 276 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LKALHATHHP 331

Query: 320 S 320
            
Sbjct: 332 R 332


>gi|189465402|ref|ZP_03014187.1| hypothetical protein BACINT_01751 [Bacteroides intestinalis DSM
           17393]
 gi|189437676|gb|EDV06661.1| hypothetical protein BACINT_01751 [Bacteroides intestinalis DSM
           17393]
          Length = 294

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 74/303 (24%), Positives = 145/303 (47%), Gaps = 13/303 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L  L+ ER  S+ T++SY  D RQF  F      E+I      ++    +R +I   
Sbjct: 5   DSFLDYLQYERNYSEETIKSYREDLRQFEEFAR----EEIGDSAPSEVKAELVREWIVSL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S+ R LS ++SF K+L ++     + +  +   K    LP  L E     L+
Sbjct: 61  MDRGYTSTSINRKLSSLRSFYKFLLRKGEVAVNPLQKITGPKNKKPLPAFLRESDMDRLL 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D           +   R+  I+ + Y  G+R+SE + L  +++    S +++ GK +K R
Sbjct: 121 D----EVDFGEGFKGCRDHMIIEMFYATGVRLSELIGLDNKDVDFSSSLIKVTGKRNKQR 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++P    ++ A++EY D+    + +      F    G+ L+  + +  +++    +    
Sbjct: 177 LIPFGEELKIAMMEYVDVRNEAVPIRTN-AFFVRENGERLSRSIVENLVKRNLSKVVTLK 235

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FAT +L++  +L +I+ +LGH  L+TT++YT+   +     + ++Y+  H
Sbjct: 236 KRSPHVLRHTFATTMLNHDAELGAIKELLGHESLATTEVYTHTTFEE----LKKVYNLAH 291

Query: 319 PSI 321
           P  
Sbjct: 292 PRA 294


>gi|238793576|ref|ZP_04637200.1| Tyrosine recombinase [Yersinia intermedia ATCC 29909]
 gi|238727166|gb|EEQ18696.1| Tyrosine recombinase [Yersinia intermedia ATCC 29909]
          Length = 276

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 140/289 (48%), Gaps = 17/289 (5%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T+ SY    +  +        E++ +   + L   ++R+ +S+ +   +   SL   LS 
Sbjct: 2   TITSYRRQLQALMEM-----GEQMGLMHWQTLDAAQVRSLVSRSKRAGLHSSSLALRLSA 56

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           ++SFL +L  + +   +    +   +    LP+ ++  +   L+D  L         +  
Sbjct: 57  LRSFLDWLVSQGVLQANPAKGVSTPRSGRHLPKNIDVDEVDKLLDIDL------NDPLAV 110

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A+L ++YG GLR+SE + +  +++      + + GKG K R VP+  +    +  + 
Sbjct: 111 RDRAMLEVMYGAGLRLSELVGMNCKHVDLASGEVWVMGKGSKERKVPIGRTAVTWLAHWL 170

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           +L   +L   +   +F    GK ++    Q+   +     G+      H LRHSFATH+L
Sbjct: 171 ELR--ELFEPVDDAIFLANTGKRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHML 228

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            + GDLR++Q +LGH  L+TTQIYT+++ ++    +  +YD  HP   +
Sbjct: 229 ESSGDLRAVQELLGHANLTTTQIYTHLDFQH----LATVYDAAHPRAKR 273


>gi|295396350|ref|ZP_06806516.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030]
 gi|294970790|gb|EFG46699.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030]
          Length = 329

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 80/318 (25%), Positives = 144/318 (45%), Gaps = 13/318 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S E L     +   L + +  S+ T+++Y  D    + FLA   +       +  +   
Sbjct: 19  LSAEYLDALDRFHNELTVHKNASEHTVRNYIADATNLMEFLAR--DGNGDPIHLADIEIG 76

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R ++     Q     +L R ++GI+SF  +  +  IT  +    +   KK+  LP  L
Sbjct: 77  NLRQWLLHLSAQGASPGTLARRIAGIRSFFTFTTRAGITATNPASRLSTPKKATRLPTVL 136

Query: 130 NEKQALTLVDNVLLHTSHETKWIDAR------NSAILYLLYGCGLRISEALSLTPQNIMD 183
            +     ++       + + K    +      + A++ LLY  G+R+SE ++L   ++  
Sbjct: 137 QQSHTEDVLTQPFEPPAEDAKLTKTQRAARTRDIALVELLYATGMRVSELVNLDTTDVDW 196

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
               + + GKG+K R +P     ++A+ E+ ++    L    Q  LF G+RG  +N    
Sbjct: 197 TAGLITVLGKGNKQRRIPFGGPSQRALTEWLEVRNH-LASEGQEALFVGVRGGRINQRQV 255

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +  + +           + H LRHS ATH++ NG D+R +Q  LGH  LS+TQIYT+V+ 
Sbjct: 256 RDVVHKATAKRAKSPEISPHGLRHSAATHMVENGADIRQVQEFLGHATLSSTQIYTHVS- 314

Query: 304 KNGGDWMMEIYDQTHPSI 321
                 + + Y Q HP  
Sbjct: 315 ---LGKLKDSYTQAHPRA 329


>gi|53804979|ref|YP_113355.1| integrase/recombinase XerC [Methylococcus capsulatus str. Bath]
 gi|53758740|gb|AAU93031.1| integrase/recombinase XerC [Methylococcus capsulatus str. Bath]
          Length = 304

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 88/316 (27%), Positives = 153/316 (48%), Gaps = 20/316 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++ + L++  ++L  L   R  S+ T  +Y  D   F  +      + + +     +   
Sbjct: 1   MAPDSLEQLDDYLDRLA--RRASRHTHAAYRRDLCAFHAYC-----DSVNLAGWADVDAA 53

Query: 70  EIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            IRA++  R  +  +  RSL+R L+ I+ F   L K+++   +    +R  +    LPR 
Sbjct: 54  RIRAYVGTRHHRGELSARSLQRLLAAIRGFFDDLLKKRLLDVNPARAVRPPRSGRRLPRL 113

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+      L+D      +     ++ R+ A+  L Y  GLR+SE + L   ++     ++
Sbjct: 114 LDVDAVAGLLD------APADDRLETRDRAMWELFYSSGLRLSELVGLDVVDVDFGAGSV 167

Query: 189 RIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
            ++ GKG K R VP+     +AI  + +     L    Q  LF   +G+ + P   +  +
Sbjct: 168 FVRKGKGGKARYVPVGAKALEAIGAWLEARRV-LTGAGQPALFLSRQGRRIAPRTVEMRL 226

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            + R  LGL      H LRHSFA+H+L   GDLR++Q +LGH  L+TTQIYT+V+ +   
Sbjct: 227 ERWRAKLGLSERVHPHMLRHSFASHMLEASGDLRAVQELLGHATLATTQIYTHVDFQR-- 284

Query: 308 DWMMEIYDQTHPSITQ 323
             +  +YDQ+HP   +
Sbjct: 285 --LAAVYDQSHPRARR 298


>gi|207727540|ref|YP_002255934.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum MolK2]
 gi|206590777|emb|CAQ56389.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum MolK2]
          Length = 329

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 91/324 (28%), Positives = 155/324 (47%), Gaps = 29/324 (8%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           +   +L  L+ ER LS  TL++Y  +       L        T   + +L    IR+ I+
Sbjct: 19  QIAAYLDVLKFERQLSPHTLENYTREL----AVLQRLGARFATGIDLTRLLPHHIRSMIA 74

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNILNMRNLKKSNSLPRALNEKQAL 135
                 +  RS+ R+LS  + + K+L  R+   T + +  +R  K    LP+AL+ +QA+
Sbjct: 75  HLHGNGLSGRSIARALSVWRGWYKWLALREAAVTANPVDGVRAPKSPKRLPKALSVEQAV 134

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-----------MDD 184
            L++ +        +     + A+  L Y CGLR+SE + L  +++             +
Sbjct: 135 ALMEQLPGDDPETIR-----DRAVNELFYSCGLRLSELVGLDLRHVKAGDYASASWLDLE 189

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF----DLNLNIQLPLFRGIRGKPLNP 240
              + + GKG+K R VP+     +A+  +    P     D        LF   RGK L  
Sbjct: 190 AREVMVLGKGNKYRTVPVGSKAAEALAAWLAARPQLARPDAAPEDAHALFLSARGKRLTQ 249

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              Q  +++     G+P     H LRHSFATH+L + GDLR++Q +LGH  +++TQ+YT+
Sbjct: 250 RQIQIRMKRNAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTS 309

Query: 301 VNSKNGGDWMMEIYDQTHPSITQK 324
           ++ ++    + +IYDQ HP   +K
Sbjct: 310 LDFQH----LAKIYDQAHPRAKKK 329


>gi|328948447|ref|YP_004365784.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489]
 gi|328448771|gb|AEB14487.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489]
          Length = 307

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 84/326 (25%), Positives = 145/326 (44%), Gaps = 25/326 (7%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +PE     L +  + +L  L   RGLS+ TL SY  D   F  F           ++   
Sbjct: 1   MPET----LFECSEEFLIYLGSVRGLSENTLLSYRQDLAHFCEFFG-------NDKSAEG 49

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           L+  ++R F+     +K    S+ R +S ++    YLKK    +++    ++ L++  +L
Sbjct: 50  LTLEDLRLFVGYLSRRKYSVASINRIISAVRGLFAYLKKFGYISKNVSYELKCLRQPKTL 109

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           PR +++ +    +DNV      +     +R+ AI  ++Y  G R+SE  SL  Q+   D 
Sbjct: 110 PRFMSQVE----IDNVCRQPEKKELLWASRDKAIFEMMYSSGCRVSELASLKFQDFTSDF 165

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN------LNIQLPLFRGIRGKPLN 239
            +  + GKG K R V      R +++ Y                     +F   +G  L+
Sbjct: 166 RSAIVTGKGKKDRRVYFEQDARNSLMLYLKERKARFPQAEKGCAGEVSRIFLSQKGTALS 225

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                  + +     G     + H  RH+FAT +L++G D+R +Q +LGH  +STTQ YT
Sbjct: 226 AHGIWYIVSRYTGIEGTGSHVSPHAFRHTFATGMLNSGADIRIVQELLGHSNISTTQRYT 285

Query: 300 NVNSKNGGDWMMEIYDQTHPSITQKD 325
           +V  +     + ++Y Q  P   +KD
Sbjct: 286 HVTLER----LKKVYSQAFPHSGKKD 307


>gi|285019429|ref|YP_003377140.1| tyrosine recombinase [Xanthomonas albilineans GPE PC73]
 gi|283474647|emb|CBA17146.1| probable tyrosine recombinase protein [Xanthomonas albilineans]
          Length = 324

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 91/313 (29%), Positives = 142/313 (45%), Gaps = 23/313 (7%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
              Q +L     E+GL++ +L SY  D   F  +     +  +            +  ++
Sbjct: 26  AAIQQFLDAAWTEQGLARQSLDSYRRDLEGFARWRDGVGDGLVGA------DRQALFNYL 79

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           + R       RS  R LS +++F     +R    +     +   +   SLP+AL E Q  
Sbjct: 80  AWRTELGYTQRSNARWLSSLRAFFALRLRRGQRGDDPTALLEPPRLPRSLPKALAESQID 139

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+          T  +  R+ A+L L+Y  GLR+SE + L    +   Q  LR+ GKG 
Sbjct: 140 ALL-----AAPDTTAPLGLRDRAMLELMYAAGLRVSELVQLPANAVNLRQGVLRVTGKGS 194

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDL-------NLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           K R+VPL    +  +  Y D     L         +  +PLF     +PL+   F   I+
Sbjct: 195 KERLVPLGEESQHWLQCYLDTARSVLVAGQAVPARDGAVPLFIDAARRPLSRQQFWVLIK 254

Query: 249 QLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +     G+ P+  + H LRHSFATHLL+ G DLR++Q +LGH  LSTTQIYT V  ++  
Sbjct: 255 RYATLAGIDPMRISPHGLRHSFATHLLNRGADLRALQMLLGHSSLSTTQIYTLVAREH-- 312

Query: 308 DWMMEIYDQTHPS 320
             +  ++ + HP 
Sbjct: 313 --LQTLHRKHHPR 323


>gi|184200720|ref|YP_001854927.1| tyrosine recombinase XerC [Kocuria rhizophila DC2201]
 gi|183580950|dbj|BAG29421.1| tyrosine recombinase XerC [Kocuria rhizophila DC2201]
          Length = 378

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 139/307 (45%), Gaps = 14/307 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +  +L +ER  S+ T++SY  D      ++  +  +   +     L    +R ++++R 
Sbjct: 81  EFRAHLSLERSRSENTVRSYTSDVADLSRWMLEHGIDGADL-----LDRDALRGWLAQRH 135

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +   S+ R ++ + +F ++    +         +R  + +  LP  +       ++D
Sbjct: 136 QRGLARSSVSRGIAAVHTFFRWAVDTQGLRHDPAAGLRGPRPARHLPDVVGATALAEMLD 195

Query: 140 NVL-----LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
            +       H       + AR+ A+L LLY  G RISE + L   ++   Q  L I GKG
Sbjct: 196 ALGDVALGPHEEESDAALAARDWALLELLYATGARISELVGLDRAHVDRAQHVLTITGKG 255

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           DK R VP       A+  +    P          +F G RG  ++P V +R +      +
Sbjct: 256 DKQRRVPYGERAGDALAVWEHRRPALATERAGDAVFVGARGGRIDPRVARRVVADALNDV 315

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
               +   H+LRHS ATHLL  G DLR++Q +LGH  ++TTQIYT+V+ +     +   Y
Sbjct: 316 PDTSARGPHSLRHSAATHLLDGGADLRTVQELLGHATVATTQIYTHVSVER----IKRAY 371

Query: 315 DQTHPSI 321
            Q HP  
Sbjct: 372 SQAHPRA 378


>gi|326333662|ref|ZP_08199899.1| putative tyrosine recombinase XerC [Nocardioidaceae bacterium
           Broad-1]
 gi|325948568|gb|EGD40671.1| putative tyrosine recombinase XerC [Nocardioidaceae bacterium
           Broad-1]
          Length = 320

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 140/305 (45%), Gaps = 15/305 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++ ++L  ERGLS  T+++Y  D R  L                  +    +R++++K++
Sbjct: 28  DYERHLSAERGLSDHTVRAYLGDVRSLLDHAGRMGR-----TDPEGIDLRTLRSWLAKQQ 82

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           T      +L R  +  + F  +L +           + + K   +LP  L   +  +L+ 
Sbjct: 83  TTGHSRTTLARRATAARVFCGWLVRTGRAQVDAGAALGSPKAHRTLPPVLRPDEVESLIA 142

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             +      T  +  R+ A+L +LY  G R+ E + L   ++  ++  +R+ GKG K R+
Sbjct: 143 AAIAAAEDGT-AVGMRDIAVLEMLYATGSRVGELVGLDLDDVDYERRVVRVLGKGRKERM 201

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP- 257
           VP      +A+  +       L      P LF G RG  L+    +  +   RR   +P 
Sbjct: 202 VPFGGPAARALDRWIVRGRPQLVTESSGPALFLGARGGRLDQRAVRTLVH--RRLADVPG 259

Query: 258 -LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRHS ATHLL  G DLRS+Q +LGH  L+TTQIYT+V+S    D + + Y Q
Sbjct: 260 APDLGPHGLRHSTATHLLEGGADLRSVQELLGHASLATTQIYTHVSS----DRLRKAYRQ 315

Query: 317 THPSI 321
            HP  
Sbjct: 316 AHPRA 320


>gi|262373155|ref|ZP_06066434.1| tyrosine recombinase XerC [Acinetobacter junii SH205]
 gi|262313180|gb|EEY94265.1| tyrosine recombinase XerC [Acinetobacter junii SH205]
          Length = 311

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 159/305 (52%), Gaps = 14/305 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+   I +  S+ T+++Y+ D   F  F    +        +  +  +++R +++ R  
Sbjct: 18  WLKE-RIIQNQSEHTIEAYQRDLTDFFNFCDSKS------LALYDIEASDLREYLANRVE 70

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           + ++   SL+R L+ I+ F+K+ ++ +   ++   + +  ++   LP  ++ +    ++D
Sbjct: 71  KDQLSSSSLQRHLTSIRQFMKWAEQGQYLQQNPSEDFKLKRQPRPLPGMVDIETVHQILD 130

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                   E + +  R+ AIL LLY  GLR++E   L  ++I  ++  LRI GKG+K RI
Sbjct: 131 QAPPDKPIEQQ-LWLRDKAILELLYSSGLRLAELQGLMIKDIDFNRQLLRITGKGNKTRI 189

Query: 200 VPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP     + +++E+      +    N+   +F   RG  L P   +  ++   +  G+ +
Sbjct: 190 VPFGQKAKDSLIEWLKIYRIWQGEFNLDSAVFISQRGNRLTPRQIENRVKLQAQRAGVNV 249

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRH FA+H+LS  GDLRS+Q +LGH  LSTTQIYT+V+     D +  +YDQTH
Sbjct: 250 DLHPHLLRHCFASHMLSASGDLRSVQEMLGHSNLSTTQIYTHVDF----DQLARVYDQTH 305

Query: 319 PSITQ 323
           P   +
Sbjct: 306 PRAQK 310


>gi|317504008|ref|ZP_07962015.1| tyrosine recombinase XerD [Prevotella salivae DSM 15606]
 gi|315664868|gb|EFV04528.1| tyrosine recombinase XerD [Prevotella salivae DSM 15606]
          Length = 293

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 74/304 (24%), Positives = 136/304 (44%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L+ ER  S LT+++Y  D R F  F            + + +    IR ++  
Sbjct: 3   INEFLNYLKFERNRSDLTIKNYGEDLRAFEEFYGNLDSR----LSWKSVDSDVIRDWMES 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S+ R LS ++SF ++   RK+  ++ +  +   KK   LP+ L E +   L
Sbjct: 59  MMDKGNNATSINRRLSALRSFYRFALTRKLVDKNPVHGVTGPKKGRPLPQFLKENEMDRL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D      S    + D R+  ++   Y  G+R+SE + L    +      L++ GK +K 
Sbjct: 119 LD----AESWTESFEDVRDRTVIMTFYETGIRLSELIGLDDSMVDFSNRQLKVTGKRNKQ 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R++P    +   + +Y      ++N   +  LF   +G+ +     +  +++    +   
Sbjct: 175 RVIPFGEELLVTLRDYMKCRDKEVNRQSE-ALFVSTKGQRMTSSQVREGVKRNLSKVCTL 233

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T H LRH+FAT +L+N   + S++ +LGH  LSTT+IYT+   +     +   Y   
Sbjct: 234 KKRTPHVLRHTFATAMLNNKAGIESVKKLLGHESLSTTEIYTHTTFEQ----LKREYYSA 289

Query: 318 HPSI 321
           HP  
Sbjct: 290 HPRA 293


>gi|241206577|ref|YP_002977673.1| site-specific tyrosine recombinase XerD [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240860467|gb|ACS58134.1| tyrosine recombinase XerD [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 317

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 92/318 (28%), Positives = 148/318 (46%), Gaps = 18/318 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             +++L+ +  ERG +  TLQSYE D      FL   +        + + +  ++ A++S
Sbjct: 8   HVESFLEMMSAERGAAANTLQSYERDLDDVRSFLTERSIR------LTEAASADLAAYLS 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               +     S  R L+ ++ F K+L    + T+     +   KK   LP+ +  ++   
Sbjct: 62  SLAREGFKPSSQARRLAAMRQFYKFLYAEGLRTDDPTGILDAPKKGRPLPKTMGVEEVGR 121

Query: 137 LVDNVLLHTSH--ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           L+             +    R  A+L LLY  G+R+SE +SL  + +  +   L I+GKG
Sbjct: 122 LLSQAEAEAEDTAPGQLQRLRMLALLELLYATGMRVSELVSLPARVLDQEGRFLMIRGKG 181

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFD----LNLNIQLPLFRG-IRGKPLNPGVFQRYIRQ 249
           +K R+VPL  S   A+  Y  L   +            LF    +   L   VF R ++ 
Sbjct: 182 NKERLVPLSHSAISALKSYGRLLAAENAAVKERQESPWLFPSASKEGYLPRQVFARDLKN 241

Query: 250 LRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           L    GL  S  + H +RH+FA+HLL+NG DLR +Q +LGH  +STTQIYT+V  +    
Sbjct: 242 LAIRAGLTPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER--- 298

Query: 309 WMMEIYDQTHPSITQKDK 326
            + ++    HP   Q  K
Sbjct: 299 -LQQLVQTHHPLAKQAKK 315


>gi|171056822|ref|YP_001789171.1| integrase family protein [Leptothrix cholodnii SP-6]
 gi|170774267|gb|ACB32406.1| integrase family protein [Leptothrix cholodnii SP-6]
          Length = 312

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 89/313 (28%), Positives = 148/313 (47%), Gaps = 21/313 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +LQ+L+++R L+  TL  Y     +     A           + Q+    +R + +   
Sbjct: 14  AFLQHLQVQRRLAPRTLTMYGAALLRLEHAAAEQQ------LALTQVRPPHVRRWAAMLH 67

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q +G RS+   L+  +   ++L +    + + +  +R  K    LP+AL   +A+ L D
Sbjct: 68  GQGLGPRSIAIHLAAWRGLYRWLGREGQVSANPVDGLRPPKAGRPLPKALAVDEAVVLAD 127

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-------RIQG 192
           +   H       +D R+ A+  LLYGCGLR +E + L      D    +       ++ G
Sbjct: 128 H---HDPATDPLLDLRDHAMTELLYGCGLRAAELIGLDCIAGPDAAGWIDLEGGDAQVLG 184

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG   RIVP+ P    A+  +  +    +    +L LF   RG  L     +R + Q  +
Sbjct: 185 KGSNRRIVPVGPPAVAAVQAWLAVRH-QMARAGELALFVSRRGTRLTDSQLRRRLAQRAQ 243

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHS+A+HLL + GDLR++Q +LGH ++STTQ+YT ++ ++    +  
Sbjct: 244 SAGLTSHVHPHMLRHSYASHLLQSSGDLRAVQELLGHAQISTTQVYTRLDYQH----LAR 299

Query: 313 IYDQTHPSITQKD 325
           IYD  HP   +K 
Sbjct: 300 IYDAAHPRARRKP 312


>gi|323137229|ref|ZP_08072308.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322397587|gb|EFY00110.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 316

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 85/325 (26%), Positives = 140/325 (43%), Gaps = 18/325 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S    ++   +L  L  ERG ++ T  +Y  D   ++ FL               ++  
Sbjct: 1   MSGRAERQLDAFLDMLAAERGAAQNTQDAYRRDLADYIDFLRGQG------TNPDDVTSD 54

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +RA+++    + +   ++ R +S I+ F K+L   +   +     +   ++  S P  +
Sbjct: 55  GVRAYLASLEPRGMSAATVARRISAIRQFHKFLYVDRHRGDDPAAALEGPRRVRSAPGVM 114

Query: 130 NEKQALTLVDNVLLHTSHETKWI-----DARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           +  +   L+         E + +      AR  A+L  LY  GLR+SE +SL        
Sbjct: 115 SVAEVDRLLSVAREGLDDEKRPLRERLRAARLYALLETLYATGLRVSELVSLPKSAARAR 174

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGK-PLNPGV 242
              + I+GKG + R+ PL    + A+ +Y  L         + P LF        L    
Sbjct: 175 DPFITIRGKGGRERLAPLTDRAKSALADYRKLLDATAPGLAEGPFLFPADSDSGHLTRQA 234

Query: 243 FQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           F R ++ L    GL       H LRH+FA+HLL NG DLR +Q +LGH  +STTQIYT+V
Sbjct: 235 FARDLKMLGVVAGLSAAQVHPHALRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHV 294

Query: 302 NSKNGGDWMMEIYDQTHPSITQKDK 326
             +     M  +    HP     D+
Sbjct: 295 LDER----MRAMVRDLHPLSDSGDE 315


>gi|239628231|ref|ZP_04671262.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518377|gb|EEQ58243.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 294

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 78/308 (25%), Positives = 139/308 (45%), Gaps = 16/308 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  E ++++  L   R  SK T  SY+ D  Q   FLA        I  + +++ T + +
Sbjct: 1   MTSEIKSFVSYLRDVRQTSKNTEISYQRDLNQLAAFLAEK-----GITEVEKVTRTSLNS 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +I     +     ++ R L+ IK+F  YL +  +        ++  K     P  L+  +
Sbjct: 56  YILYLEKEGKATTTISRELASIKAFFSYLFREGMIRRDPSELLKAPKIEKKAPVILSVNE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
             +L+D         +   + R+ A++ LLY  G+R+SE + L   ++      +  +  
Sbjct: 116 VNSLLDQ-----PGTSSPKEIRDKAMMELLYATGIRVSELIGLELSDLNMQIGYITCRD- 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRR 252
           G K R+VP   +  +A+  Y +    +L    + P LF    GK ++   F + I+    
Sbjct: 170 GLKERMVPFGKTASQAMSIYLERGRRELLKGKESPWLFTNCSGKAMSRQGFWKIIKYYGE 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    T HTLRHSFA HL+  G D+ ++Q++LGH   +T Q+Y   +    G+ + E
Sbjct: 230 KAGIQADITPHTLRHSFAAHLIRGGADVHAVQAMLGHSDSTTAQMYAAYS----GNTVRE 285

Query: 313 IYDQTHPS 320
            Y    P 
Sbjct: 286 NYRAALPR 293


>gi|304389803|ref|ZP_07371762.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315657108|ref|ZP_07909992.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|304326979|gb|EFL94218.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315492211|gb|EFU81818.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 323

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 101/331 (30%), Positives = 156/331 (47%), Gaps = 18/331 (5%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY-TEEKIT 59
           M  NN   + + E+  +   WL    + RGLS  T+++Y  D R+ + FL    + +   
Sbjct: 1   MSENNPAAVFAREITADFGQWL---SVNRGLSPQTVRAYLTDLRELMTFLVDSDSGDGPA 57

Query: 60  IQTIRQ--LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
            Q +R    +   IRA++       +   +L R ++  ++F  + + R I       N+R
Sbjct: 58  AQQLRADLANPARIRAWLGAMSRAGMSRATLARRVASFRTFASWAQVRGIVPGDAGQNLR 117

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETK----WIDARNSAILYLLYGCGLRISEA 173
             +  N+LP  L+   A  L++        E       +  R+ A L LLY  G+R+SE 
Sbjct: 118 ASRPDNALPTVLSATDAAHLLETARAAAYPEASTAPNPVKLRDWAALELLYATGIRVSEL 177

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL---F 230
             L   NI   Q T+R+ GKGDK R+VP       A+ EY +     L    +  L   F
Sbjct: 178 TGLELGNINKSQRTVRVTGKGDKQRVVPYGIPAGLALEEYLEKGRPALVNPEKPALNRVF 237

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
            G +G  L+  + +  + +L    G+P     H LRH+ ATHLL  G DLRS+Q ILGH 
Sbjct: 238 LGAKGGMLDTRIVRGMLHRLTAQAGVP-DLGPHGLRHTAATHLLDGGADLRSVQEILGHA 296

Query: 291 RLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            L+TTQ YT+++     D +  +Y Q HP  
Sbjct: 297 SLATTQRYTHLS----MDKLRAVYLQAHPRA 323


>gi|170729959|ref|YP_001775392.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa M12]
 gi|167964752|gb|ACA11762.1| integrase/recombinase [Xylella fastidiosa M12]
          Length = 324

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 93/308 (30%), Positives = 144/308 (46%), Gaps = 24/308 (7%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L  L I+ GLS+ TL SY  D      +             +  L+   +  +++ R  Q
Sbjct: 31  LDALWIKHGLSRHTLNSYRRDLEGLARWNNGRAG------PLATLTPPALLDYLTWRTQQ 84

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                S  R LS +++F  Y  +     ++    + +    + LP+AL E Q   L+   
Sbjct: 85  HYSPLSNARLLSVLRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQIEALLAAP 144

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
            + T         RN A+L L+Y  GLR+SE ++L    +   Q  LRI GKG K R+VP
Sbjct: 145 SIETPE-----GLRNRAMLELMYAAGLRVSELITLPVAMLNRRQGVLRITGKGGKERLVP 199

Query: 202 LLPSVRKAILEYYDLCPFDLNLNI--------QLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           L    +  +  Y +     L  +          +PLF     K L+   F R+I+     
Sbjct: 200 LGEESQHWLQRYLEQARPSLAADKPIPADSDGDVPLFINTNLKRLSRQQFWRWIKHYAAL 259

Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+ P   + H LRHSFATHLL++G DLR++Q +LGH  +STTQIYT +  ++    + +
Sbjct: 260 AGIAPNKVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTLIARQH----LQQ 315

Query: 313 IYDQTHPS 320
           ++ Q HP 
Sbjct: 316 LHAQHHPR 323


>gi|260219998|emb|CBA27096.1| Tyrosine recombinase xerC 1 [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 321

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 83/326 (25%), Positives = 153/326 (46%), Gaps = 31/326 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+ + +E+ L+  T++ Y  D  +                T+R +    IR ++++
Sbjct: 9   VEKYLEFVRVEKRLAARTVELYSLDLGRLSEQATRAG------VTMRDVRNHHIRRWVAQ 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             +     R +   LSG + F  +L +  + + + + ++R+ K    LP+AL    A+  
Sbjct: 63  MHSAGRSGRGIALILSGWRGFYAWLGREGLVSSNPVQDVRSPKAPKPLPKALAVDDAVQF 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-------RI 190
            D      S++  W++AR++AI+ LLYG GLR+ E + L      D +  +        +
Sbjct: 123 ADFE----SYDNAWLEARDAAIVELLYGSGLRVGELVGLDVVAGKDAKGWIDMQAAEAHV 178

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLC----------PFDLNLNIQLPLFRGIRGKPLNP 240
            GKG K R VP+  +  +A+  + +L                 +    LF G  G  L  
Sbjct: 179 LGKGSKRRSVPVGATAMQALQRWLELRGPSGTATAAPVDAAAAHAASALFTGRNGTRLTA 238

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               + +++  +  GL +    H LRHSFA+H+L + GDLR +Q +LGH  ++TTQ+YT 
Sbjct: 239 QSVWQRLKRRSQLAGLNVPVHPHMLRHSFASHVLQSSGDLRGVQELLGHANITTTQVYTR 298

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKDK 326
           ++ ++    + + YD  HP    K +
Sbjct: 299 LDFQH----LAKAYDAAHPRAKLKRE 320


>gi|303237489|ref|ZP_07324054.1| putative tyrosine recombinase XerC [Prevotella disiens FB035-09AN]
 gi|302482309|gb|EFL45339.1| putative tyrosine recombinase XerC [Prevotella disiens FB035-09AN]
          Length = 292

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 73/304 (24%), Positives = 135/304 (44%), Gaps = 14/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L+ L  ER  S+ T+  Y  D   F  F     +E     +   +    +R ++  
Sbjct: 3   IEDFLKYLTFERNYSQRTIGEYSEDLHGFEQFYKKLDDE----LSWENIDTDVVRDWVEY 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S+ R LS ++SF +Y  KR          ++  K+   LP+ L E +  TL
Sbjct: 59  MMDKGNTATSVNRRLSALRSFYRYALKRGFVENDPTYKLQGPKRKKPLPQFLKEAEMDTL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               L+       + D     I+   Y  G+R+SE + L  ++I      +++ GK +K 
Sbjct: 119 ----LVPEMWGNTYKDVLARTIILTFYSTGIRVSELVGLNNKDINIVTHEIKVTGKRNKQ 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RI+P    + + I  Y  L   ++    Q  LF   +G+ +     +  ++     +   
Sbjct: 175 RIIPFGKELEEQIDTYQKLRNDEI--GEQEALFVTAKGERITTAQVRTMVKANLAKVSTL 232

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FAT +L+N   L S++ +LGH  + TT++YT+V  +     + + Y++ 
Sbjct: 233 KKKSPHVLRHTFATAMLNNKAGLESVKKLLGHESIVTTEVYTHVTFEQ----LKKAYNEA 288

Query: 318 HPSI 321
           HP  
Sbjct: 289 HPRA 292


>gi|218961859|ref|YP_001741634.1| Tyrosine recombinase xerD [Candidatus Cloacamonas acidaminovorans]
 gi|167730516|emb|CAO81428.1| Tyrosine recombinase xerD [Candidatus Cloacamonas acidaminovorans]
          Length = 313

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 88/318 (27%), Positives = 159/318 (50%), Gaps = 19/318 (5%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
            + E +S  L     +++ +L++ERG++K +++SY  D   FL+F           + I 
Sbjct: 14  GIEEELSPALKSYLSSFVYHLKVERGMAKNSIESYRRDIGDFLLFC---------PKEIG 64

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
                +I  ++   +   + + S+ R    +  F  +LK   I T+ ++  +  +K    
Sbjct: 65  NYETDDITKYLLSLQEIGLLNTSVARKRVALGQFFGFLKDNDIETKVDMDLVPRIKLGVQ 124

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L  ++   L++++ + T      ++ RN  ++ LLY  G+RISE LS++  ++   
Sbjct: 125 LPDVLTVEEMFQLLNSLPVKTP-----LEIRNKLMMELLYATGMRISELLSISLHDLNLT 179

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           +  + + GKG K R VP + ++ +   +Y     P  L L     LF   RG+ ++   F
Sbjct: 180 ERVILVHGKGSKQRYVPYVDTLDELFAKYLKQSRPILLKLKQSELLFLNNRGERMSRMGF 239

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            + +R+      +    T HT RHSFATHLL  G +LR +Q++LGH  + TTQIYT+++ 
Sbjct: 240 WKILRKAVLEANIKKEVTPHTFRHSFATHLLEGGVNLRIVQALLGHSSIDTTQIYTHIDM 299

Query: 304 KNGGDWMMEIYDQTHPSI 321
           K     ++E Y + HP  
Sbjct: 300 KR----LVETYKEYHPRA 313


>gi|218682269|ref|ZP_03529870.1| site-specific tyrosine recombinase XerC [Rhizobium etli CIAT 894]
          Length = 248

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 121/256 (47%), Positives = 170/256 (66%), Gaps = 8/256 (3%)

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +   + RAF++ RR Q  G RSL R+L+G++S L++L+K+ +   +    +R+ K+  SL
Sbjct: 1   MRPADFRAFLAARRKQGSGARSLGRNLAGLRSLLRHLEKKGLVNAAGAGAIRSPKQPKSL 60

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P+ L++ QA+T+V N      H+  WI AR++A++ LLYGCGLRISEAL L P ++    
Sbjct: 61  PKPLSDTQAITVVSNE--AQLHDEPWIAARDAAVMTLLYGCGLRISEALDLVPADLQKGA 118

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
           +TLRI GKG+K R+VPLL  V  A+ +Y  LCP DL      PLFRG RG  L P + QR
Sbjct: 119 TTLRITGKGNKTRLVPLLSVVFDAVEKYRTLCPHDLEAAE--PLFRGARGGKLQPAIIQR 176

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +++LR   GLP + T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTTQ+YT V++  
Sbjct: 177 AMQKLRSAFGLPETATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASR 236

Query: 306 GGDWMMEIYDQTHPSI 321
               ++E+YD+ HP  
Sbjct: 237 ----LLEVYDRAHPRA 248


>gi|260909719|ref|ZP_05916413.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260636144|gb|EEX54140.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 293

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 77/303 (25%), Positives = 135/303 (44%), Gaps = 13/303 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L+ E   S+LT+ SY  D R F  F       K T  +   +    IR ++   
Sbjct: 4   EQFLNYLQYELNRSELTIASYGDDLRAFEAFFK----NKDTQLSWEAIDADIIRDWMESM 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     +++R LS ++SF ++   R   T++    +   K+S  LP+ L E +   L+
Sbjct: 60  MDKGCSATTIQRRLSALRSFYRFGLTRGYVTKNPARGIVGPKRSRPLPQFLREAEIDRLL 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D           + +     I+   Y  G+R++E + L   +I  +   +++ GKG K R
Sbjct: 120 D----DVPAGDSYRELLAYTIVLTFYSTGMRLAELVGLDDDSIDFETRVIKVLGKGSKQR 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++P    + + +  Y      ++        F    G+ +  G  Q  +R     +    
Sbjct: 176 LIPFADELEEGLKTYITRRDAEV-TRKSKAFFVDRHGERVKRGAVQNSVRASLAKVTSMK 234

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRHSFAT +L+N   L S++ +LGH  LSTT+IYT+   +     +  IYD+ H
Sbjct: 235 KRSPHVLRHSFATAMLNNEAGLESVKKLLGHESLSTTEIYTHTTFEQ----LRRIYDKAH 290

Query: 319 PSI 321
           P  
Sbjct: 291 PRA 293


>gi|327313166|ref|YP_004328603.1| tyrosine recombinase XerC [Prevotella denticola F0289]
 gi|326944725|gb|AEA20610.1| tyrosine recombinase XerC [Prevotella denticola F0289]
          Length = 292

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 68/301 (22%), Positives = 134/301 (44%), Gaps = 13/301 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +ER  S +T+ SY  D   F  F      +     T   +    +R ++     
Sbjct: 5   FLDYLRLERNYSPMTVISYRKDLEAFERFCQELGPQ----ITWESVDTDVVRDWMEDMMD 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     S+ R +S ++SF ++  +  + ++  +  ++  ++   LP+ L E +   L+D 
Sbjct: 61  KGNAASSVNRRISALRSFYRFALRCGLVSKDPVHGLQGPRRQKPLPQFLKESEMEQLLDP 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                     + D     ++   Y  G+R+SE   L  +++ D    L++ GK +K RI+
Sbjct: 121 ----AMWTDGYGDVLARTLIVTFYETGIRLSELTGLDDRDVDDVTCELKVTGKRNKQRII 176

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P    + + +  Y  +       +    LFR  +G+ +     +  +++    +      
Sbjct: 177 PFGKELEETLAAYRCVRDARTG-DSSPALFRTEKGERMTNAQVRALVKKNLSRVSTLKKR 235

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           T H LRH+FAT +L++   L S++ +LGH  LSTT+IYT+   +     + ++Y   HP 
Sbjct: 236 TPHVLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQ----LKKVYKNAHPR 291

Query: 321 I 321
            
Sbjct: 292 A 292


>gi|332886450|gb|EGK06694.1| hypothetical protein HMPREF9456_00568 [Dysgonomonas mossii DSM
           22836]
          Length = 295

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 80/308 (25%), Positives = 150/308 (48%), Gaps = 13/308 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++   + +++ L  E+  S  T  SY  D  QF+ FLA    E  +   I+ +    IR 
Sbjct: 1   MMLLIEKYIRYLRYEKNYSLHTEISYSEDLSQFVEFLA----EHFSDTDIKHVDRDIIRM 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +I     ++I  RS+ R LS +KSF +YL++    T +    +   K    +P   N   
Sbjct: 57  WIVSMMEREISARSVNRKLSAVKSFYRYLQRIGEVTVNPASKVNGPKVGRPIPAFANSAD 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++D      ++   +   R+  I+ L Y  G+R +E + L   ++     T+++ GK
Sbjct: 117 MAKVLD----EENYGDSFESLRDHIIIELFYVTGIRRAELIGLKDVDVDFSSETIQVTGK 172

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            +K R++P    +++++ +Y  +   ++  N    LF    G+PL P +  R +    + 
Sbjct: 173 RNKQRLIPFSNGMKQSLEQYIAVRNKEVG-NQSGYLFVKNNGEPLYPMLVHRIVTSSLQQ 231

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +      + H LRHSFAT +L+NG D+ +++ +LGH  L+ T+IYT+ + +     +  I
Sbjct: 232 IETLSKVSPHVLRHSFATGMLNNGADINAVKELLGHASLAATEIYTHTSFEE----LKRI 287

Query: 314 YDQTHPSI 321
           Y++ HP  
Sbjct: 288 YNKAHPRA 295


>gi|150390286|ref|YP_001320335.1| tyrosine recombinase XerD [Alkaliphilus metalliredigens QYMF]
 gi|149950148|gb|ABR48676.1| tyrosine recombinase XerD [Alkaliphilus metalliredigens QYMF]
          Length = 294

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 142/305 (46%), Gaps = 16/305 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             N++  L+ E+ LS  TL+SY+ D +QF  +LA        I  I + + T I  ++  
Sbjct: 5   INNFIIYLKNEKHLSTNTLESYKRDVKQFTSYLAGS-----DIHDIEETTKTTIITYLFY 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            + +     ++ RSL+ ++SF  YL   K        N+ + K     P           
Sbjct: 60  LQKEGRAASTISRSLASLRSFYHYLLLHKKVDIDPTFNLESPKMVKKPPNI-----LTLE 114

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
              +LL     T     R+ A+L LLY  G+R++E +SL  +++  +   +R      K 
Sbjct: 115 EVELLLQQPLNTTPKGIRDKAMLELLYATGIRVTELISLNLEDVNVNLGYIRCCN-NTKE 173

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R++P+      A+ +Y           N +  LF    G  L    F + I+   +   +
Sbjct: 174 RVIPIGTLSLIALQKYINYYRDAFTKDNEEKSLFLNYHGGRLTRQGFWKIIKVYTKQAAI 233

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             S T HTLRHSFATHL+ NG DL+S+Q +LGH  +STTQ+Y  +        + ++Y++
Sbjct: 234 EKSITPHTLRHSFATHLIENGADLKSVQEMLGHSDISTTQVYAQLT----KHKIKDVYNK 289

Query: 317 THPSI 321
           THP  
Sbjct: 290 THPRA 294


>gi|300741394|ref|ZP_07071415.1| putative tyrosine recombinase XerC [Rothia dentocariosa M567]
 gi|300380579|gb|EFJ77141.1| putative tyrosine recombinase XerC [Rothia dentocariosa M567]
          Length = 339

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 94/325 (28%), Positives = 157/325 (48%), Gaps = 14/325 (4%)

Query: 2   EGNNLPEIVSFE-LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
              +L  ++S E  L   +++ + L  E+  S+ T++SY  D   F  F+         I
Sbjct: 24  STPDLAPVLSGEVFLPIVEHFERYLRYEKYRSEETIRSYISDLYGFFGFIGRR-----GI 78

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             +  ++   IR ++     ++    ++ R  S +++F  +  + ++ TE+    M   K
Sbjct: 79  SRVEDINLQLIREWLGSMHLKQNAKTTVARRGSTLRTFFSWAHEEELITENPTRGMSTPK 138

Query: 121 KSNSLPRALNEKQALTLVDNVLLHT-SHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           +   LP  L+++Q  +++D V L    +       R  A+L +LY  G+RISE   L   
Sbjct: 139 RDRHLPAVLSQEQMSSVLDTVALRCRENPQDIRMLRLWAVLEVLYSSGMRISELTGLNLS 198

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC---PFDLNLNIQLPLFRGIRGK 236
           +I     T+R+ GKG+K R+VPL     K + ++  +               LF G RGK
Sbjct: 199 SIDRANKTVRVIGKGNKERVVPLGTPAMKVLSQWVKIGRPYWIAKGSRDVTALFIGPRGK 258

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
             NP   +  I ++ R L     + AH LRHS ATHL+  G D+R++Q +LGH  LSTTQ
Sbjct: 259 RANPRQIREDISRILRTLEDTEVSGAHVLRHSAATHLVDGGADIRTVQELLGHASLSTTQ 318

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSI 321
           IYT+V+ K     + + Y + HP  
Sbjct: 319 IYTHVSMKR----LADTYTRAHPRA 339


>gi|222087381|ref|YP_002545918.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium
           radiobacter K84]
 gi|221724829|gb|ACM27985.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium
           radiobacter K84]
          Length = 319

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 92/321 (28%), Positives = 148/321 (46%), Gaps = 19/321 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             + +L+ +  ERG +  TLQSYE D      FL+  +        + +    ++ A++S
Sbjct: 9   HMEAFLEMMSAERGAAVNTLQSYERDLDDLHSFLSERSVR------LTEAGSNDLGAYLS 62

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               Q     S  R LS ++ F K+L    + T+     +   KK  +LP+ +  ++   
Sbjct: 63  GLSRQGFKPSSQARRLSAMRQFYKFLYAEGLRTDDPTGILDAPKKGRALPKTMGVEEVTR 122

Query: 137 LVDNVLLHTSHETK--WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           L+       + E+       R   +L LLY  G+R+SE ++L  + +  +   L I+GKG
Sbjct: 123 LLTQAEKEAAEESPDQLQRLRMLVLLELLYATGMRVSELVTLPAKVLDQEGRFLMIRGKG 182

Query: 195 DKIRIVPLLPSVRKAILEY-----YDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIR 248
           +K R+VPL  S   A+  Y                    LF    +   L   VF R ++
Sbjct: 183 NKERLVPLSQSAIAALKTYGKLQTQVAANTKQPAPESAWLFPAASKQGYLPRQVFARDLK 242

Query: 249 QLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            L    GL  S  + H +RH+FA+HLL+NG DLR +Q +LGH  +STTQIYT+V  +   
Sbjct: 243 DLAIRAGLTPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER-- 300

Query: 308 DWMMEIYDQTHPSITQKDKKN 328
             + ++    HP   Q  K+ 
Sbjct: 301 --LHQLVQMHHPLAKQGKKQE 319


>gi|330997394|ref|ZP_08321245.1| putative tyrosine recombinase XerC [Paraprevotella xylaniphila YIT
           11841]
 gi|329570768|gb|EGG52484.1| putative tyrosine recombinase XerC [Paraprevotella xylaniphila YIT
           11841]
          Length = 293

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 78/303 (25%), Positives = 138/303 (45%), Gaps = 13/303 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L +ER  S  T++ Y  D   F  +         +  +   +    +R ++   
Sbjct: 4   EAFLEYLTLERNYSLRTVEEYRDDLNAFESYYKKVD----STLSWETMDGDVVRDWMVSM 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   ++ R LS +++F +YL +R       + N++  KK   LP  L E +   L+
Sbjct: 60  MEAGRTATTVNRRLSALRTFYRYLLRRDWIKVDPVRNIQGPKKKKPLPVFLKESEMNRLL 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D           ++  R+  I+   Y  G+R+SE  SL  Q++      +R+ GK +K R
Sbjct: 120 DGDFF----GNDFLGKRDKLIVNTFYVTGIRLSELTSLNNQDVDMWGGVIRVTGKRNKQR 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVP    + +A+L  Y      L L     +F   +G+ L     +  +R     +    
Sbjct: 176 IVPFGDEL-EALLTAYLDEKSSLGLEDGGAMFVDEKGERLTNVKVRNLVRHYLGMVTTQK 234

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FAT +L++  DL S++ +LGH  +STT+IYT+   +     + E+Y+Q H
Sbjct: 235 KRSPHVLRHTFATSMLNHHADLESLKELLGHESISTTEIYTHTTFEE----LKEMYNQAH 290

Query: 319 PSI 321
           P  
Sbjct: 291 PRA 293


>gi|241664950|ref|YP_002983310.1| site-specific tyrosine recombinase XerC [Ralstonia pickettii 12D]
 gi|240866977|gb|ACS64638.1| tyrosine recombinase XerC [Ralstonia pickettii 12D]
          Length = 328

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 91/324 (28%), Positives = 154/324 (47%), Gaps = 29/324 (8%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           +   +L  L  ER LS  TL+SY  +       L     +      + QL    IR  ++
Sbjct: 18  QIAAYLDALRFERQLSPHTLESYTREL----AVLQRLGAQHAANIDLTQLQSHHIRRMMA 73

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNILNMRNLKKSNSLPRALNEKQAL 135
           +     +  RS+ R+LS  + + K++  R    T + +  +R  K    LP+AL+ +QA+
Sbjct: 74  QLHGDGLSGRSIARALSAWRGWFKWMALRDAAVTANPVDGVRAPKSPKRLPKALSVEQAV 133

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-----------MDD 184
            L++ +             R+ A+  L Y CGLR+SE +SL  +++             +
Sbjct: 134 ALMEQL-----PGDDPETVRDRAVNELFYSCGLRLSELVSLDMRHVKAGAYESASWLDLE 188

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC----PFDLNLNIQLPLFRGIRGKPLNP 240
              +++ GKG K R VP+     +A+  +  +       D        LF   RGK L  
Sbjct: 189 AREVQVLGKGSKRRTVPVGTKAAQALAAWLAVRAQLAKPDAAPEDAHALFLSPRGKRLAQ 248

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              Q  +++     G+P     H LRHSFATH+L + GDLR++Q +LGH  +++TQ+YT+
Sbjct: 249 RQIQLRMKRNAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTS 308

Query: 301 VNSKNGGDWMMEIYDQTHPSITQK 324
           ++ ++    + +IYDQ HP   +K
Sbjct: 309 LDFQH----LAKIYDQAHPRAKKK 328


>gi|218264364|ref|ZP_03478221.1| hypothetical protein PRABACTJOHN_03917 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222062|gb|EEC94712.1| hypothetical protein PRABACTJOHN_03917 [Parabacteroides johnsonii
           DSM 18315]
          Length = 302

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 82/309 (26%), Positives = 149/309 (48%), Gaps = 17/309 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             ++L  L  ER  S+ T+ +Y  D +QF  F+    E+K  I    ++    +R +I  
Sbjct: 5   IDSFLDCLRYERNYSEYTIGAYSKDLQQFEDFVK---EKKEGIFVPEEVDADIVRNWIIS 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
               KI   S+ R LS +KSF K+L K+   + + +  +   K    LP  + EK    L
Sbjct: 62  LLDNKISPVSVNRKLSSLKSFFKFLMKQGFVSVNPLRFVTGPKTKKPLPTFVKEKDMEEL 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D        +  +   R+  IL +LY  G+R SE + L   +I  D   +++ GK +K 
Sbjct: 122 LD----GDGFDEDFEGVRDRLILEMLYDTGVRRSELVGLQDIDIDYDAMLIKVTGKRNKQ 177

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R++P    ++  +L Y ++   ++        F    G+ L+ G+    ++  ++   +P
Sbjct: 178 RLIPFAERLKNLMLAYTEVRNREVGAG-SGWFFVRKNGEQLSTGILYTIVK--KKLSDIP 234

Query: 258 --LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRHSFAT +L+NG +L +++ +LGH  L++T IYT+   +     + ++Y 
Sbjct: 235 TLAKCSPHVLRHSFATSMLNNGAELNAVKELLGHSSLASTSIYTHTTFEE----LKKVY- 289

Query: 316 QTHPSITQK 324
             HP   ++
Sbjct: 290 HAHPRAQKE 298


>gi|283781943|ref|YP_003372698.1| integrase family protein [Pirellula staleyi DSM 6068]
 gi|283440396|gb|ADB18838.1| integrase family protein [Pirellula staleyi DSM 6068]
          Length = 314

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 86/310 (27%), Positives = 147/310 (47%), Gaps = 21/310 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  +++++ L  E  L+K ++ +Y+ D  +F  +L            I +L+  ++  ++
Sbjct: 22  RWARSFIEYLRTECHLAKNSVAAYQRDMTRFCRWLGDRF--------IPKLTVRDLTDYL 73

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +  R + +  +S+ R +  +K FL+YL+   I  ++    +   K + ++P  L+   A 
Sbjct: 74  AFMREENLDPKSIARHVVTLKLFLRYLQLEGIIKDNPAELLGTTKTAATIPDVLSPTVAA 133

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+D            +  R+ A+L LLY  G R SE   +  +++  +      +GKG 
Sbjct: 134 RLLD-----APQPYDPLFRRDRALLELLYATGCRASEVSVMEVRDLRIEDRFCLARGKGS 188

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL----PLFRGIRGKPLNPGVFQRYIRQLR 251
           K R+VPL      A+  Y +     L    +      L    RG+ L        ++Q  
Sbjct: 189 KERLVPLGDPALAAVEAYLEHERPKLAAKSKQGVPPWLLLSSRGQRLTRQKIWELVKQYA 248

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G P S + HTLRHSFATHLLS G DLR +Q +LGH  + TTQIYT+V+       + 
Sbjct: 249 LRCGAPASMSPHTLRHSFATHLLSGGADLRQVQELLGHASIGTTQIYTHVDQSR----LK 304

Query: 312 EIYDQTHPSI 321
           +I+ Q HP  
Sbjct: 305 KIHSQFHPRA 314


>gi|256820383|ref|YP_003141662.1| integrase family protein [Capnocytophaga ochracea DSM 7271]
 gi|256581966|gb|ACU93101.1| integrase family protein [Capnocytophaga ochracea DSM 7271]
          Length = 307

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 88/306 (28%), Positives = 143/306 (46%), Gaps = 9/306 (2%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              ++  L IE   S  T+++Y+ D R F  F+    EEK     + Q    +I+ +I  
Sbjct: 3   INAFIIYLSIEMKYSDHTVEAYKHDLRSFEKFIKNLYEEKGEDCCLEQADQEDIKKWIIH 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALT 136
              + I  RS+ R LS +K++  +LKK K    S     +  LK         +E +   
Sbjct: 63  LSDETISFRSINRKLSALKTYYNFLKKTKQIEISPFEKGIFLLKTEKKHKLPFSEAEIEK 122

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           ++       S +  + + RN A++  LY  G+R SE   L   ++  +Q  +++ GKGDK
Sbjct: 123 VLSFF----SSKDSFDEVRNRAVIETLYATGIRRSELSGLKVSDVDFEQKQIKVLGKGDK 178

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R +P++P +   + EY  L     N   Q  LF    GK +   +  R I      +  
Sbjct: 179 ERYIPIIPELENTLKEYLVLREEVKNEKSQDYLFLVKNGKKIYSTLVYRIINSYFSVVTT 238

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRHSFA+HLL NG DL +++ +LGH  L++TQ+YTN +       + + Y +
Sbjct: 239 KKDVSPHVLRHSFASHLLDNGADLYTVKELLGHSSLASTQVYTNTS----LAELKKQYKK 294

Query: 317 THPSIT 322
            HP   
Sbjct: 295 AHPRAK 300


>gi|259415887|ref|ZP_05739807.1| phage integrase [Silicibacter sp. TrichCH4B]
 gi|259347326|gb|EEW59103.1| phage integrase [Silicibacter sp. TrichCH4B]
          Length = 317

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 93/319 (29%), Positives = 150/319 (47%), Gaps = 20/319 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+    +L     E G +  TL +Y  D R    ++A          +  Q+  ++I A+
Sbjct: 8   LQWISTFLDAQAAELGAAHNTLLAYGRDLRNVTAWMAHKG------TSFAQMRQSDIEAY 61

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +     + +   +  R LS IK   ++  +     ++  L ++   +  SLP+ L+E + 
Sbjct: 62  LISCDAEGLSRATRARRLSAIKQIYRFAFEEGWRQDNPALQIKGPGREKSLPKTLDENEV 121

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+      T   T+    RN+ ++ LLY  G+R+SE +SL       D + L I GKG
Sbjct: 122 DRLLGA--ARTVGRTEADRLRNTCLMELLYATGMRVSELVSLPVSAARGDPNMLLILGKG 179

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLN------IQLPLFRGI-RGKPLNPGVFQRYI 247
            K R+VPL P  R A+  + ++     +            LF    +   L    F   I
Sbjct: 180 GKERMVPLSPPARMALSTWIEVRDAVEDKREGQGHKASRFLFPSRSKEGHLTRHRFYLLI 239

Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           ++L    G+ P   T HTLRH+FATHLL NG DLR+IQ++LGH  ++TT+IYT+V     
Sbjct: 240 KELAVAGGVSPEKVTPHTLRHAFATHLLQNGADLRAIQALLGHADIATTEIYTHVLDAR- 298

Query: 307 GDWMMEIYDQTHPSITQKD 325
              + E+  + HP  T+ D
Sbjct: 299 ---LAELVHRHHPLATKDD 314


>gi|269795657|ref|YP_003315112.1| tyrosine recombinase XerC subunit [Sanguibacter keddieii DSM 10542]
 gi|269097842|gb|ACZ22278.1| tyrosine recombinase XerC subunit [Sanguibacter keddieii DSM 10542]
          Length = 310

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 76/315 (24%), Positives = 141/315 (44%), Gaps = 12/315 (3%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           +  S + ++  + +  +L  +RGLS+ T+++Y  D      F       ++    +  + 
Sbjct: 7   DAPSLDDVRVLEEFSAHLTSQRGLSEHTVRAYASDLAGLSSFA-----HQVGAGPLAAVG 61

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
              +R ++++   + +   ++ R  + +++F  +  +         + + +   S +LP 
Sbjct: 62  LDTLRGWLAQMAGRDLARSTVARRGAAVRAFYGWAVRSGRVGSDPSVRLGSPTVSKTLPT 121

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L    A  L++               R  A + LLY  G+R+ E +SL  Q++  D  +
Sbjct: 122 VLAVDSATALMETARTAAVDG-DPAALRAWACVELLYATGVRVGELVSLDLQDVDLDTRS 180

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRY 246
           +R+ GKGDK R+VP       A+  + +     L        +F G RG+       +  
Sbjct: 181 VRVVGKGDKERVVPFGVPAATALRSWIEDGRPGLERGSGATAVFLGQRGQRWGQRQVRET 240

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           + +L     +      H LRHS ATHLL+ G DLR++Q +LGH  LSTTQ YT+V+++  
Sbjct: 241 VHRLSAAASVD-DVAPHDLRHSAATHLLNGGSDLRTVQEVLGHSTLSTTQRYTHVSAER- 298

Query: 307 GDWMMEIYDQTHPSI 321
              +   Y   HP  
Sbjct: 299 ---LRSSYQLAHPRA 310


>gi|281602227|gb|ADA75211.1| Tyrosine recombinase xerD [Shigella flexneri 2002017]
          Length = 273

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 84/286 (29%), Positives = 137/286 (47%), Gaps = 17/286 (5%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97
           +Y  D    + +L           T+      +++A +++R        S  R LS ++ 
Sbjct: 3   AYRRDLSMMVEWLHHRG------LTLATAQSDDLQALLAERLEGGYKATSSARLLSAVRR 56

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
             +YL + K   +    ++ + K    LP+ L+E Q   L+   L+        ++ R+ 
Sbjct: 57  LFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQP-----LELRDK 111

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DL 216
           A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG+K R+VPL       +  Y    
Sbjct: 112 AMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHG 171

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLS 275
            P+ LN      LF   R + +    F   I+      G+     + H LRH+FATHLL+
Sbjct: 172 RPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLN 231

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           +G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q HP  
Sbjct: 232 HGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQHHPRA 273


>gi|299137337|ref|ZP_07030519.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
 gi|298600742|gb|EFI56898.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
          Length = 317

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 95/320 (29%), Positives = 162/320 (50%), Gaps = 23/320 (7%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P I +  LL+E   ++ +L +ERGL  L+ ++Y+ D   F  FL        T+ T RQ 
Sbjct: 6   PTINAASLLRE---YMTHLRVERGLRPLSCEAYQRDLEMFAEFLEGAN---ATLLTARQ- 58

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
               +  F+   R   I  RS+ R LS ++ F ++L   K       +N+ +      LP
Sbjct: 59  --ESVSGFMQHLREHGIESRSVARKLSCLRGFYRWLLMDKRIPHDPTVNIESPSSWKVLP 116

Query: 127 RALNEKQALTLVDNVLLHT-SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           ++L E +   +++   +   S        R+ AIL LLY  GLR+ E +SL  +++  + 
Sbjct: 117 KSLAETEVNEMLERTGVAARSDAADGASLRDHAILELLYAGGLRVGEIVSLRQEDLRLES 176

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGV 242
           ++++++GKGDK RIVP+  S  +A+  Y      +L      +Q  LF  +RG PL    
Sbjct: 177 ASVQVRGKGDKERIVPIGRSAIEALEAYVQRGRPELMRSKSGVQRTLFLSVRGNPLTTQK 236

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             + +R       +    + H LRHS ATH++ +G DLR++Q++LGH  ++TTQ+YT++ 
Sbjct: 237 VWQMVRS------VNSHASPHKLRHSCATHMVEHGADLRTVQTLLGHADIATTQVYTHL- 289

Query: 303 SKNGGDWMMEIYDQTHPSIT 322
                D + +++   HP   
Sbjct: 290 ---AIDRLKQVHRLHHPRAK 306


>gi|153953866|ref|YP_001394631.1| hypothetical protein CKL_1241 [Clostridium kluyveri DSM 555]
 gi|146346747|gb|EDK33283.1| XerD [Clostridium kluyveri DSM 555]
          Length = 292

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 82/293 (27%), Positives = 148/293 (50%), Gaps = 15/293 (5%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           + +SK TL +Y  D  +F  F+            ++++    I A++   + +     S+
Sbjct: 15  KHMSKNTLDAYIRDINRFYNFIKKREG------NLKEVEVVSIMAYVQYLQKEGKAISSI 68

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R++  +++F KYL  + +  E+ +L     K  +++P+ L   +   L+D     +   
Sbjct: 69  VRNIVSLRNFYKYLMVKGVINENPLLYYEIPKVKHNIPKVLTVDEVDKLLD-----SPDS 123

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
           T +   R+ A+L ++Y  G+++ E L+LT  +I    S +R +   +K R+VP+     +
Sbjct: 124 TTYKGIRDKAMLEIMYAAGMKVMELLTLTIYDIDLKFSYIRCKSLKNKERLVPIGSVAVQ 183

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            +  Y D+ P  LN+     LF  +RG  ++   F + ++   +   +     A TLRHS
Sbjct: 184 YLKNYLDIRP-QLNIYNLDTLFLNLRGAAMSRQGFWKIVKYYAKESKIDKDINAFTLRHS 242

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           FA HLL NG D++S+Q +LGH  LS TQIY+ V  KN    + E+Y ++HP  
Sbjct: 243 FAVHLLQNGADIKSVQELLGHKDLSATQIYSAVLKKN---KIAEVYKKSHPRA 292


>gi|77463394|ref|YP_352898.1| integrase/recombinase XerD [Rhodobacter sphaeroides 2.4.1]
 gi|77387812|gb|ABA78997.1| Probable integrase/recombinase XerD [Rhodobacter sphaeroides 2.4.1]
          Length = 311

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 82/323 (25%), Positives = 146/323 (45%), Gaps = 20/323 (6%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + +  + +    +L+    E   ++ T  +Y  D + +  +L   +E+ +T       + 
Sbjct: 1   MEAAGMERWISAFLEAQAAELDAARNTRLAYGRDLKDYATWLGRRSEDFLTA------TR 54

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             + A+++    Q +   +  R LS I+   ++  +     ++  + +    +S  LP+ 
Sbjct: 55  DTVEAYLTFCEAQGLSSATRARRLSSIRQLYRFGHEEGWRADNPAIRISGPGRSKRLPKT 114

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L  ++   L++            I  RN  +L LLY  G+R+SE + L       +   +
Sbjct: 115 LEIEEVDRLLEAARDKGRRAEDQI--RNRCLLELLYATGMRVSEMVGLPVAAARGNPRMI 172

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCP------FDLNLNIQLPLFRGIRGK-PLNPG 241
            ++GKG K R+VPL P  R+A+ ++                     LF G      L   
Sbjct: 173 LVRGKGGKERMVPLSPPAREALADWLRARDAAEAQGQKAGRPASRFLFPGSGAAGHLTRE 232

Query: 242 VFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            F   ++Q+    G+ P   T HTLRH+FATHLL+ G DLR IQ++LGH  LSTT+IYT+
Sbjct: 233 YFYVLVKQIAVLAGVDPAKVTPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTH 292

Query: 301 VNSKNGGDWMMEIYDQTHPSITQ 323
           V   +    + E+  + HP   +
Sbjct: 293 VLDAH----LKELVLKHHPLARE 311


>gi|308235890|ref|ZP_07666627.1| site-specific tyrosine recombinase XerC [Gardnerella vaginalis ATCC
           14018]
 gi|311115014|ref|YP_003986235.1| tyrosine recombinase XerC [Gardnerella vaginalis ATCC 14019]
 gi|310946508|gb|ADP39212.1| tyrosine recombinase XerC [Gardnerella vaginalis ATCC 14019]
          Length = 357

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 86/352 (24%), Positives = 144/352 (40%), Gaps = 50/352 (14%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + S E       ++  L   +GL   TL++Y  D  Q L +          +  +  +S 
Sbjct: 17  VSSTEASDLSDRYIDYLRSNKGLGSRTLRAYRVDVLQCLEWCGVN-----DLSDLNSVST 71

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           + +R ++     +     SL R +  ++ F  +     + + +    +   K  N LP  
Sbjct: 72  SVLRQWMYWL-NKNHARSSLARKVVAVRGFFAWTTHVGLISANPAQILNTPKIVNELPTV 130

Query: 129 LNEKQALTLVDNVLLHTSH------------------------------------ETKWI 152
           L+E QA  L+D     +                                      +   I
Sbjct: 131 LDEAQAEKLLDCAEDRSEDYAVDKSPATEHQENTPLKSQIKMRIKSKIKSQTKTKQEYVI 190

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
             RN+AIL LLY  G+R+ E   L  Q++  +  T+++ GKG+K R+VP      KA  +
Sbjct: 191 ALRNAAILELLYATGMRVGELTGLNVQDMDFENHTVKVTGKGNKQRVVPFGVPAAKACKK 250

Query: 213 YYDLCPFDLNLNI---QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           + D     L          LF G+R K ++  + +  + +      +P     H LRHS 
Sbjct: 251 WLDCGRSALQEKSAASSQALFLGVRAKRIDQRIVRSIVHEAAAAANVP-DVAPHALRHSA 309

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           ATH+L+ G DLR +Q +LGH  L+TTQ YT+V+ +     + + Y Q  P  
Sbjct: 310 ATHMLNGGADLREVQELLGHSSLNTTQRYTHVSIQ----ALKQRYSQAFPRA 357


>gi|315223453|ref|ZP_07865310.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287]
 gi|314946626|gb|EFS98617.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287]
          Length = 307

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 88/306 (28%), Positives = 143/306 (46%), Gaps = 9/306 (2%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              ++  L IE   S  T+++Y+ D R F  F+    EEK     + Q    +I+ +I  
Sbjct: 3   INAFIIYLSIEMKYSDHTVEAYKHDLRSFEKFIKSLYEEKGEDCCLEQADQEDIKKWIIH 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALT 136
              + I  RS+ R LS +K++  +LKK K    S     +  LK         +E +   
Sbjct: 63  LSDETISFRSINRKLSALKTYYNFLKKTKQIEISPFEKGIFLLKTEKKHKLPFSEAEIEK 122

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           ++       S +  + + RN A++  LY  G+R SE   L   ++  +Q  +++ GKGDK
Sbjct: 123 VLSFF----SSKDSFDEVRNRAVIETLYATGIRRSELSGLKVSDVDFEQKQIKVLGKGDK 178

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R +P++P +   + EY  L     N   Q  LF    GK +   +  R I      +  
Sbjct: 179 ERYIPIIPELENTLKEYLVLREEVKNEKSQDYLFLVKNGKKIYSTLVYRIINSYFSVVTT 238

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRHSFA+HLL NG DL +++ +LGH  L++TQ+YTN +       + + Y +
Sbjct: 239 KKDVSPHVLRHSFASHLLDNGADLYTVKELLGHSSLASTQVYTNTS----LAELKKQYKK 294

Query: 317 THPSIT 322
            HP   
Sbjct: 295 AHPRAK 300


>gi|209693751|ref|YP_002261679.1| site-specific tyrosine recombinase XerC [Aliivibrio salmonicida
           LFI1238]
 gi|208007702|emb|CAQ77813.1| tyrosine recombinase XerC [Aliivibrio salmonicida LFI1238]
          Length = 303

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 84/319 (26%), Positives = 155/319 (48%), Gaps = 16/319 (5%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           + E +  +  K    + + L  E+GLS  T ++Y+         L      ++ + + + 
Sbjct: 1   MSESLPPQYEKHLTAFYEFLRNEKGLSIYTQRNYKRQLTTIAEQLI-----ELGVDSWQD 55

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +    +R   SK     +   SL   LS ++SF  +L  R +   +    +   +KS  L
Sbjct: 56  VDAGWVRQITSKGMRSGLKASSLSTRLSSLRSFFDFLVLRNVLQANPAKGVSAPRKSRPL 115

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P+ ++  +   L++       +E   +  R+ A++ L+YG GLR++E + +  ++I   Q
Sbjct: 116 PKNIDVDEMGQLLEV------NEDDPLSIRDRAMMELMYGAGLRLAELVGIDVRDIQLRQ 169

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             LR+ GKGDK R VP     ++ +  +  +     N   +  LF    G  ++    Q+
Sbjct: 170 GELRVIGKGDKERKVPFSGKAKEWLGHWLQVRNQLANPEEKG-LFVSKLGVRISHRNVQK 228

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            + +     G+    + H LRHSFATH+L + G+LR++Q +LGH  +STTQIYT+++ ++
Sbjct: 229 RMAEWGMKQGVNSHISPHKLRHSFATHMLESSGNLRAVQELLGHENISTTQIYTHLDFQH 288

Query: 306 GGDWMMEIYDQTHPSITQK 324
               + + YDQ HP   +K
Sbjct: 289 ----LAQAYDQAHPRAKKK 303


>gi|219854481|ref|YP_002471603.1| hypothetical protein CKR_1138 [Clostridium kluyveri NBRC 12016]
 gi|219568205|dbj|BAH06189.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 295

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 82/293 (27%), Positives = 148/293 (50%), Gaps = 15/293 (5%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           + +SK TL +Y  D  +F  F+            ++++    I A++   + +     S+
Sbjct: 18  KHMSKNTLDAYIRDINRFYNFIKKREG------NLKEVEVVSIMAYVQYLQKEGKAISSI 71

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R++  +++F KYL  + +  E+ +L     K  +++P+ L   +   L+D     +   
Sbjct: 72  VRNIVSLRNFYKYLMVKGVINENPLLYYEIPKVKHNIPKVLTVDEVDKLLD-----SPDS 126

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
           T +   R+ A+L ++Y  G+++ E L+LT  +I    S +R +   +K R+VP+     +
Sbjct: 127 TTYKGIRDKAMLEIMYAAGMKVMELLTLTIYDIDLKFSYIRCKSLKNKERLVPIGSVAVQ 186

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            +  Y D+ P  LN+     LF  +RG  ++   F + ++   +   +     A TLRHS
Sbjct: 187 YLKNYLDIRP-QLNIYNLDTLFLNLRGAAMSRQGFWKIVKYYAKESKIDKDINAFTLRHS 245

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           FA HLL NG D++S+Q +LGH  LS TQIY+ V  KN    + E+Y ++HP  
Sbjct: 246 FAVHLLQNGADIKSVQELLGHKDLSATQIYSAVLKKN---KIAEVYKKSHPRA 295


>gi|34499125|ref|NP_903340.1| integrase/recombinase [Chromobacterium violaceum ATCC 12472]
 gi|34104976|gb|AAQ61332.1| integrase/recombinase [Chromobacterium violaceum ATCC 12472]
          Length = 295

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 79/307 (25%), Positives = 141/307 (45%), Gaps = 20/307 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR-AF 74
                +L  L +E GLS+ TL +Y  D  +    LA          ++   +  ++  A 
Sbjct: 6   DSIDAFLDQLWLEDGLSQNTLAAYRRDLSKLAARLAERG------VSLETATLADLEQAL 59

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++   ++K    +  R  S ++ + ++L +  +  +     + + K+   LP++++E   
Sbjct: 60  LAGVASEK--PATRARLTSALRRYYQHLSRNGVRQDDPSARLASPKQGLRLPKSMSEMDV 117

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D            +  R+ A+L +LY  GLR+SE + +T   +      ++  GKG
Sbjct: 118 EALLD-----APDVETPLGLRDRAMLEVLYASGLRVSELVGMTLNQLNLLDGVVKTMGKG 172

Query: 195 DKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            K R+VPL    +  +L Y     P  L       +F   R   +   +    I Q    
Sbjct: 173 SKERLVPLGEIAQDWLLRYLKEARPLLLAGQPCDAVFVTQRKAGMTRQMAWHLITQYAGR 232

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL    + H LRH+FATHL+++G DLR +Q +LGH  +STTQIYT+V  +     + ++
Sbjct: 233 QGLAK-VSPHVLRHAFATHLVNHGADLRVVQLLLGHADISTTQIYTHVARER----LKQL 287

Query: 314 YDQTHPS 320
           + + HP 
Sbjct: 288 HARHHPR 294


>gi|86131808|ref|ZP_01050405.1| phage integrase family protein [Dokdonia donghaensis MED134]
 gi|85817630|gb|EAQ38804.1| phage integrase family protein [Dokdonia donghaensis MED134]
          Length = 296

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 88/306 (28%), Positives = 152/306 (49%), Gaps = 12/306 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+ L +E+  SK T+ +YE D   F +FL     E+  ++    ++Y +IRA+I  
Sbjct: 3   LKPFLEYLNLEKNYSKHTVLAYEKDVTSFFVFLENNYGERDPVK----VAYAQIRAWIIS 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +  +S+ R +S +KS+ K+L K      S ++  ++LK S  +    +EK+   +
Sbjct: 59  LVDAGLSSQSVNRKVSSLKSYYKFLLKTGDILVSPLVKHKSLKVSKRVQIPFSEKEVAIV 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++           +   R+  I+ LLYG G+R +E + LT  ++   Q  L+++GK DK 
Sbjct: 119 LE----ELRESQDFTSLRDLLIVELLYGTGMRRAELIDLTMGSVDFSQKILKVKGKRDKE 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R +PLLP V   +  Y              PL   ++G  +   +  R I +        
Sbjct: 175 RFIPLLPGVITTLERYVVERAQVAQSGNSEPLLVTLKGLKVYSTLVYRIINRYFSEASDK 234

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
             T+ H LRHSFATHLL+ G DL  ++ +LGH  L++TQ+YT+    N    + ++Y + 
Sbjct: 235 FKTSPHILRHSFATHLLNQGADLNVVKELLGHASLASTQVYTH----NSIKALKDVYSKA 290

Query: 318 HPSITQ 323
           HP   +
Sbjct: 291 HPRTKK 296


>gi|237746874|ref|ZP_04577354.1| tyrosine recombinase XerD [Oxalobacter formigenes HOxBLS]
 gi|229378225|gb|EEO28316.1| tyrosine recombinase XerD [Oxalobacter formigenes HOxBLS]
          Length = 303

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 143/305 (46%), Gaps = 15/305 (4%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
               + + + +E GLS+ TL +Y  D + F  +L    E+      + +++   + ++  
Sbjct: 2   AIDEFCETVWLEDGLSQNTLDAYRRDMQLFAQWL----EKNGPGTRLLEVTPDILNSYFL 57

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            R ++     S  R L+ +K F +   +      +    M   K+    P  L+E Q  +
Sbjct: 58  ARHSES-KATSANRRLTVLKRFYRLQFRLGRLAVNPCQKMHAAKQPARFPGTLSETQVES 116

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+             +  R+  ++ L+Y  GLR+SE ++L    +  ++  LRI GKG K
Sbjct: 117 LL-----IAPRVENPLGLRDRTMIELMYASGLRVSELVTLKLVEVGMNEGVLRILGKGSK 171

Query: 197 IRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R+VP     R  I  Y     PF L   +   LF   RG  +   +F   IR+     G
Sbjct: 172 TRLVPFGEEARIWIERYMRESRPFILAGKVSDYLFVTARGTSMTRQMFWTLIRKYALQSG 231

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     + +++ 
Sbjct: 232 IHEPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVAQQR----LKQLHA 287

Query: 316 QTHPS 320
             HP 
Sbjct: 288 IHHPR 292


>gi|325204823|gb|ADZ00277.1| tyrosine recombinase XerC [Neisseria meningitidis M01-240355]
          Length = 301

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 83/313 (26%), Positives = 150/313 (47%), Gaps = 17/313 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L      +L+N+  E G S+ T+ +Y  D     +       E++        +  +   
Sbjct: 6   LAAYLDAYLENIVRE-GKSEHTVAAYRRD-----LQELLALLEEMPSANPSNCTRGDFVQ 59

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            + +   + +G+R+L R LS  + +  +L KR +       +++  K+   +P+AL ++ 
Sbjct: 60  ALRRLSGRGLGERTLARKLSSWRQYCVWLVKRGLMHADPTADIKPPKQPERIPKALPQE- 118

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
               ++ +L     ++  +  R+ A+  L+YG GLR+SE   L   ++  D+  +R+ GK
Sbjct: 119 ---CLNQMLDLPVDDSDALALRDHALFELMYGSGLRLSEIHGLDTGDVWLDEGWVRVTGK 175

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R VPL     +A+  Y  L     +      LF G  G  L+    Q+ +      
Sbjct: 176 GRKQRQVPLTGKSVEALKNYLPLRQTASDGK---ALFTGRNGTRLSQRQIQKRLESWAAQ 232

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G     + H +RHS+A+HLL +  D+R++Q +LGH  LSTTQIYT ++     D +  +
Sbjct: 233 NGDGRHISPHMMRHSYASHLLQSSRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARL 288

Query: 314 YDQTHPSITQKDK 326
           YD+ HP   +++K
Sbjct: 289 YDEAHPRAKRQEK 301


>gi|299068373|emb|CBJ39597.1| site-specific tyrosine recombinase [Ralstonia solanacearum CMR15]
          Length = 329

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 90/324 (27%), Positives = 152/324 (46%), Gaps = 29/324 (8%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           +   +L  L+ ER LS+ TL SY  +       L              QL    IR  ++
Sbjct: 19  QIAAYLDALKFERKLSEHTLASYAREL----AVLQQLGARFAAGIDPMQLQPHHIRRMMA 74

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNILNMRNLKKSNSLPRALNEKQAL 135
           +     +  RS+ R+LS  + + K+L  R    T + +  +   K    LP+AL+ +QA+
Sbjct: 75  QLHGGGLSGRSIARALSAWRGWYKWLALRDAAVTANPVDGIHAPKSPKRLPKALSVEQAV 134

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-----------MDD 184
            L++++             R+ A+  L Y CGLR+SE + L  ++              +
Sbjct: 135 ALMEHL-----PGDDPEAVRDRAVNELFYSCGLRLSELVGLDLRHAKAGDYASASWLDLE 189

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC----PFDLNLNIQLPLFRGIRGKPLNP 240
              + + GKG+K R +P+     +A+  +  +     P D        LF   RGK L  
Sbjct: 190 AREVTVLGKGNKRRTLPVGSKAAEALAAWLAVRAQLAPPDAAPEDAHALFLSARGKRLTQ 249

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              Q  +++     G+P     H LRHSFATH+L + GDLR++Q +LGH  +++TQ+YT+
Sbjct: 250 RQIQTRMKRNAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTS 309

Query: 301 VNSKNGGDWMMEIYDQTHPSITQK 324
           ++ ++    + +IYDQ HP   +K
Sbjct: 310 LDFQH----LAKIYDQAHPRAKKK 329


>gi|196230590|ref|ZP_03129452.1| integrase family protein [Chthoniobacter flavus Ellin428]
 gi|196225520|gb|EDY20028.1| integrase family protein [Chthoniobacter flavus Ellin428]
          Length = 315

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 87/321 (27%), Positives = 149/321 (46%), Gaps = 24/321 (7%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT--------------EEKITIQT 62
             ++++  L  ERGLS+    S       F  +L                  EE +    
Sbjct: 4   AIEDFILYLATERGLSENYQLSTRLSLEGFARWLEKRNAGKEAESKDPLGEEEETLPEVA 63

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
             ++++ +I  +++ ++   +   S+K  +  +K F ++L  RK         +   +  
Sbjct: 64  PGEVTHQQITDYLAHKKRLGLSAASIKLIVVALKIFFRWLHARKRIERDVAEVLPLPRTE 123

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             LP  +NE Q   L++ + +           R+ A+L LLY  GLR+SE ++   +N+ 
Sbjct: 124 RYLPETMNELQVDRLLEGISIDAPR-----GLRDRALLELLYASGLRVSELVNARLENLD 178

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPG 241
            D   +R+ GKG+K+R+VP+      AI  Y +    ++        +F   RG  L   
Sbjct: 179 LDARIIRVTGKGNKMRLVPVGQKACDAIRAYLEKERPEMVGKKTGSEVFLSSRGTKLTTV 238

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              + ++   +  GL ++   H LRHSFATHLLSNG DLR IQ +LGH  +STTQIYT+V
Sbjct: 239 RIWQIVKACAKNAGLDINVYPHLLRHSFATHLLSNGADLRIIQEMLGHADISTTQIYTHV 298

Query: 302 NSKNGGDWMMEIYDQTHPSIT 322
           + +     +  ++ + HP   
Sbjct: 299 DQQR----LKAVHHRFHPRAK 315


>gi|15835241|ref|NP_297000.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum Nigg]
 gi|270285413|ref|ZP_06194807.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum Nigg]
 gi|270289427|ref|ZP_06195729.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum Weiss]
 gi|301336810|ref|ZP_07225012.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum
           MopnTet14]
 gi|34223083|sp|Q9PK47|XERC_CHLMU RecName: Full=Tyrosine recombinase xerC
 gi|8163270|gb|AAF73578.1| integrase/recombinase, phage integrase family [Chlamydia muridarum
           Nigg]
          Length = 315

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 94/319 (29%), Positives = 138/319 (43%), Gaps = 22/319 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI------------- 60
           ++     +L  L+  +  S  TL++Y  D      FL    E   T              
Sbjct: 1   MIASFYAFLDYLKNMKAASPHTLRNYSIDLSSLKCFLEKKGELTPTPPLSLQEDSRSSSQ 60

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            +    +   IR ++ ++       R+++R LS IKSF K+  K +   E+    +R  +
Sbjct: 61  LSFSLFTKENIRLYLLEQIQTTHSKRTVRRRLSAIKSFAKFCVKNQWIPENPAEMIRGPR 120

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LP  L  +Q L L+           K    R+  +L L Y  GLRISE  +L   +
Sbjct: 121 LPKELPSPLTYEQVLALM-----SAPDLDKVTGFRDRCLLELFYSSGLRISEITALNRSD 175

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I    + LRI GKG K RIVP+     + +  Y D              F    GK L+ 
Sbjct: 176 IDFQSNLLRICGKGKKERIVPMTKVAVQWLQAYLDHPDRAAVEQDHQACFLNRFGKRLST 235

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               R  +Q     GL  + T HT+RH+ ATH L  G DL++IQ +LGH  L TT IYT+
Sbjct: 236 RSIDRKFQQYLLKTGLSGTITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTH 295

Query: 301 VNSKNGGDWMMEIYDQTHP 319
           V+ K       +I+D+ HP
Sbjct: 296 VSMKLK----KQIHDEAHP 310


>gi|218680623|ref|ZP_03528520.1| site-specific tyrosine recombinase XerD [Rhizobium etli CIAT 894]
          Length = 311

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 89/314 (28%), Positives = 146/314 (46%), Gaps = 18/314 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             +++L+ +  ERG +  TLQSYE D      FL            + + +  ++ A+++
Sbjct: 8   HVESFLEMMSAERGAAANTLQSYERDLDDVSAFLKERGIR------LTEAASADLAAYLA 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               +     S  R L+ ++ F K+L    + T+     +   KK   LP+ +  ++   
Sbjct: 62  SLARKGFKPSSQARRLAAMRQFYKFLYAEGLRTDDPTGILDAPKKGRPLPKTMGVEEVGK 121

Query: 137 LVDNVLLHTSH--ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           L+             +    R  A+L LLY  G+R+SE +SL  + +  +   L I+GKG
Sbjct: 122 LLSQAETEAQDAAPGQLQRLRMLALLELLYATGMRVSELVSLPARVLDQEGRFLMIRGKG 181

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFD----LNLNIQLPLFRG-IRGKPLNPGVFQRYIRQ 249
           +K R+VPL  S   A+  Y  L   +     +      LF    +   L   VF R ++ 
Sbjct: 182 NKERLVPLSQSAISALKSYGRLLAAENAAVKDPQESPWLFPAASKEGYLPRQVFARDLKN 241

Query: 250 LRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           L    GL  S  + H +RH+FA+HLL+NG DLR +Q +LGH  +STTQIYT+V  +    
Sbjct: 242 LAIRAGLTPSMISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER--- 298

Query: 309 WMMEIYDQTHPSIT 322
            + ++    HP   
Sbjct: 299 -LQQLVQTHHPLAK 311


>gi|124006330|ref|ZP_01691164.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134]
 gi|123987987|gb|EAY27658.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134]
          Length = 299

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 147/305 (48%), Gaps = 15/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   L++ER LS+ +L++Y  D ++F  +L       +      ++    I+ F+S 
Sbjct: 7   IKEFGTYLKLERSLSENSLEAYLHDIQKFSDYLEMAGLSIL----PAEVKADHIKKFLSY 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I   S  R LSGIK+F KYL   +       +N+   +    +P  L+ ++   L
Sbjct: 63  LAKLGIAASSQARILSGIKAFYKYLMLEETIERDPSVNVHTPRIDRKIPDVLSLQEIEDL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +  + L T        ARN A++ +LY  GLR++E + L   N+  D   LRI GK +K 
Sbjct: 123 LAVIDLSTPE-----GARNRAMIEVLYSSGLRVTELIELKISNLYLDIGFLRIIGKANKE 177

Query: 198 RIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R VP+     + ++ Y         +  N +  +F   RG  ++  +    I+++     
Sbjct: 178 RFVPIGREAARYLISYIENIRSNVPVKPNNEDFVFLNRRGTKISRVMVFMIIKEVALLAD 237

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + + HT RHSFATHL+  G +++++Q +LGH  ++TT+IY  ++     D + +   
Sbjct: 238 IKKNISPHTFRHSFATHLILGGANIKAVQEMLGHENITTTEIYKRLDQ----DILRQTLL 293

Query: 316 QTHPS 320
           + HP 
Sbjct: 294 EFHPR 298


>gi|196232913|ref|ZP_03131763.1| integrase family protein [Chthoniobacter flavus Ellin428]
 gi|196223112|gb|EDY17632.1| integrase family protein [Chthoniobacter flavus Ellin428]
          Length = 298

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 147/305 (48%), Gaps = 19/305 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++   LE+ER  S  TL +Y     +F         +   +   ++L+    R ++ + 
Sbjct: 11  DDFFTFLEVERNASPRTLINYRHALAEF--------RQVPNLPAWKELTADHFRRYLFEC 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + I   +++   + +++F K+L +R    E+ +  ++  K    LP  L  KQ   L+
Sbjct: 63  SKRGIARPTIRLHFAALRTFYKFLTERHGLKENPLKEVQLPKLEKKLPLVLTTKQIDELL 122

Query: 139 DNVLL--HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
              L    ++    W+ AR++AIL L Y  GLR++E ++L   N+     ++R+ GKG K
Sbjct: 123 SAPLRIEKSAKAPVWMPARDAAILELFYSSGLRLAELVALDVANVDIYSESVRVLGKGRK 182

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+VP+      AI +Y              PLF     + L        IR+   +  +
Sbjct: 183 ERVVPVGAPALTAIQKYRQEANVHAG-----PLFLSKVRRRLTAANVWLVIRRYLPHTSI 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           PL  + H LRHSFATHLL  G DLRS+QS+LGH  LSTTQIYT+V  +     +   YD+
Sbjct: 238 PLKVSPHKLRHSFATHLLDAGADLRSVQSLLGHASLSTTQIYTHVTIER----LKTAYDE 293

Query: 317 THPSI 321
            HP  
Sbjct: 294 AHPRA 298


>gi|212633304|ref|YP_002309829.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella
           piezotolerans WP3]
 gi|212554788|gb|ACJ27242.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella
           piezotolerans WP3]
          Length = 304

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 84/309 (27%), Positives = 153/309 (49%), Gaps = 19/309 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++ + L  ER +S  T+++Y  + ++     A             +L +  ++A I+K  
Sbjct: 15  DFERYLTTERQVSAYTVRNYLFELKRVEAVFAAN-------DDWLELKHESLQAIIAKLH 67

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +  RSL  +LS IK F  +L + +  + +  LN+   K++  LP+ ++      L++
Sbjct: 68  RKGLSPRSLSLTLSSIKQFFDFLLREQQISVNPALNLSAPKQAKPLPKNMDVDSVTHLLE 127

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                       +  R+ AI+ L Y  GLR++E  +L   +I   Q+ +++ GKG K RI
Sbjct: 128 I------DANDPLSYRDKAIMELFYSSGLRLAELAALNVTDIKFSQAQVKVMGKGSKERI 181

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VP+      AI ++ D+            LF   +G+ L     Q  + +  +   L + 
Sbjct: 182 VPIGKLALTAISQWLDIKRDI--PCEDDALFVTAKGRRLAHRSIQARLAKWGQEQALSVK 239

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRHSFATH+L +  DLR++Q +LGH  LSTTQ+YT+++ ++    + ++YD  HP
Sbjct: 240 VHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQVYTSLDFQH----LAKVYDSAHP 295

Query: 320 SITQKDKKN 328
              ++  K+
Sbjct: 296 RAKKRGNKS 304


>gi|229820995|ref|YP_002882521.1| integrase family protein [Beutenbergia cavernae DSM 12333]
 gi|229566908|gb|ACQ80759.1| integrase family protein [Beutenbergia cavernae DSM 12333]
          Length = 380

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 88/312 (28%), Positives = 144/312 (46%), Gaps = 14/312 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +  +LE +RGLS  T+++Y  D    L  L    +E      + +L    +R ++++
Sbjct: 75  VERYALHLEAQRGLSAHTVRAYTSDVADLLAELPPTGDEPNGA-DLTRLDLVALRRWLAR 133

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +    +   +L R  +  ++F  +  +  +  E     +R+ +    +P  L E  A T+
Sbjct: 134 QARAGLARSTLARRSASARTFTAWAHRAGLLAEDVGARLRSPRADVVVPVVLTEADAATV 193

Query: 138 VD--------NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +D                E   +  R+SA+L LLYG  LR+SE   L   ++   +  +R
Sbjct: 194 LDGVRADDGGVGADDDEGERSALALRDSAMLELLYGAALRVSELAGLDTGDVDLRERLVR 253

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG K R+VP      +AI  +  + P          LF G RG  ++P V +  + +
Sbjct: 254 VLGKGAKERVVPFGLPAARAIEAWISVRPELAGPRSGRALFLGARGGRIDPRVVRDVVHR 313

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+      H LRHS ATHLL+ G DLRS+Q ILGH  L+TTQ YT+V  +     
Sbjct: 314 ATARAGV-RDLAPHGLRHSAATHLLAGGSDLRSVQEILGHASLATTQRYTHVTPER---- 368

Query: 310 MMEIYDQTHPSI 321
           +   + Q HP  
Sbjct: 369 LRAAFRQAHPRA 380


>gi|119896887|ref|YP_932100.1| site-specific recombinase [Azoarcus sp. BH72]
 gi|119669300|emb|CAL93213.1| site-specific recombinase [Azoarcus sp. BH72]
          Length = 303

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 85/317 (26%), Positives = 147/317 (46%), Gaps = 20/317 (6%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E     L  E + +L  L  +R  + LTL++Y  D  +         E     + +  L 
Sbjct: 6   EAPLAPLTDECEAYLAYLGDQRRAAPLTLENYRRDLHRL--------ERLGDGRALMTLG 57

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
             +IR F+++   + +  RS+ R LS  +   ++L +R++   + +  +R  K    LPR
Sbjct: 58  AADIRRFVARLHGEGLSGRSIARVLSCWRGLYRWLLRRRLIPANPVDGIRAPKSPRLLPR 117

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQS 186
           AL+  QA  L+D            ++ R+ A+  L Y  GLR+SE   L         + 
Sbjct: 118 ALSPDQAQALLD------PPAEAALEVRDLAMFELFYSSGLRLSELAGLDVGGGLDPAEG 171

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            + + GK  K R VP+      A+  +  +            LF    G+ ++P   +  
Sbjct: 172 MVTVLGKRGKTRSVPVGAHAWAALKAWDTVRAAIAPAAEPA-LFVTRSGRRMSPSAIRDR 230

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           + +  R +GL +    H LRHSFA+HLL + GDLR++Q +LGH  + +TQ+YT+++ ++ 
Sbjct: 231 LARRARSVGLGVHVHPHMLRHSFASHLLQSSGDLRAVQELLGHSSIRSTQVYTHLDFQH- 289

Query: 307 GDWMMEIYDQTHPSITQ 323
              +  IYD  HP   +
Sbjct: 290 ---LARIYDAAHPRARK 303


>gi|295690851|ref|YP_003594544.1| integrase family protein [Caulobacter segnis ATCC 21756]
 gi|295432754|gb|ADG11926.1| integrase family protein [Caulobacter segnis ATCC 21756]
          Length = 313

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 79/312 (25%), Positives = 131/312 (41%), Gaps = 15/312 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L+ + +ER  ++ TL +Y  D      FL        + + +       + A+   
Sbjct: 9   VDAFLEMMAVERAAARNTLTAYGKDLEDARGFLGR------SKRDLDDADAEAVEAYFQD 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + +   +  R  S ++ F +++      T+     +   K    LP+ L   +   L
Sbjct: 63  LGARGLSPATAARRRSAVRQFYRFVLGEGWRTDDPSRRVAAPKAGRPLPKVLERAEIERL 122

Query: 138 VDNVLL-HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           +      +T         R + I+ L+Y  GLRISE L+L    +  D + L ++GKG K
Sbjct: 123 LAAATAPNTEMGDSAQGLRLACIIELIYASGLRISELLALPLTALARDPAYLIVKGKGGK 182

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRRY 253
            R+ PL  + R A+  Y       L         LF    G   L      + +      
Sbjct: 183 ERLAPLNDAARAAVNAYLAGRRTFLPKGAKESPWLFPSRGGSGRLTARRVGQLLDDAAIA 242

Query: 254 LGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FATHLL  G DLR IQ++LGH  ++TTQIYT+V  ++    +  
Sbjct: 243 AGIDRDKVSPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVAGEH----LAH 298

Query: 313 IYDQTHPSITQK 324
           +    HP   +K
Sbjct: 299 VVQTKHPLGRKK 310


>gi|33152918|ref|NP_874271.1| site-specific tyrosine recombinase XerC [Haemophilus ducreyi
           35000HP]
 gi|71153410|sp|Q7VKG8|XERC_HAEDU RecName: Full=Tyrosine recombinase xerC
 gi|33149143|gb|AAP96660.1| integrase/recombinase XerC [Haemophilus ducreyi 35000HP]
          Length = 304

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 85/315 (26%), Positives = 152/315 (48%), Gaps = 17/315 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L  + Q +   L IE+ +S  TL +Y+         L         I   + +  + +R
Sbjct: 7   KLYLQAQAYWDFLRIEKQVSPHTLTNYQRQLLAISEMLIAAQ-----IDDWQAVDASVVR 61

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
             +++   Q +G +S+   L  ++ +  YL +R     +  + ++  K +  LP+ ++ +
Sbjct: 62  WILTQSHKQGLGAKSIGLRLVVLRQWFAYLVQRHYVKVNPAVGIKAPKVARHLPKNIDAE 121

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L+D  +       +  D R+ A++ L+Y  GLR++E   L   ++    + +R+ G
Sbjct: 122 RMGQLLDVEV------DEPADIRDLAMMELMYSSGLRLAELQRLDLGDMDLIDAEVRLLG 175

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG+K RIVP+      A+  +  + P          LF   RG  L+    Q  +++   
Sbjct: 176 KGNKERIVPIGSRALTALQAWLTVRP--SFNPQDNALFLNKRGGRLSHRSIQLAMQKWGE 233

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATHLL    DLR++Q +LGH  LSTTQIYT+++ ++    + +
Sbjct: 234 RQGLATRLHPHKLRHSFATHLLEASTDLRAVQELLGHSSLSTTQIYTHLDFQH----LAK 289

Query: 313 IYDQTHPSITQKDKK 327
           IYD +HP   +K + 
Sbjct: 290 IYDASHPRARRKRED 304


>gi|315125203|ref|YP_004067206.1| site-specific recombinase [Pseudoalteromonas sp. SM9913]
 gi|315013716|gb|ADT67054.1| site-specific recombinase [Pseudoalteromonas sp. SM9913]
          Length = 314

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 78/308 (25%), Positives = 148/308 (48%), Gaps = 21/308 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   L+ ER  S  T+  Y         F A Y  +         +    IR +    R 
Sbjct: 22  FSDYLKFERQYSAHTVNQYVSQL----GFAALYFNKL--CDNWFAVQSEHIRRYSMALRA 75

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITT----ESNILNMRNLKKSNSLPRALNEKQALT 136
           +++  R++   LS I+S  K+LK + IT      +    ++  K +  LP+ L+  Q   
Sbjct: 76  KQLSGRTISLKLSCIRSLYKFLKAKNITEQPHYHNPAQGIKGPKFAKPLPKNLDVDQMAR 135

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L++        +   +  R+ A++ L+Y  GLRISE +    Q+I      + ++GKG K
Sbjct: 136 LLEIP------DDDPLAIRDKAMMELMYSSGLRISELVGANMQDINARNGEILVRGKGAK 189

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R++P+     +A+ ++  + P  +  + +  +F   +   ++    +  +++     G+
Sbjct: 190 ERLIPVGSKALEALKKWLAVRPLFMGAD-EHAVFLSSKKNRISVRQVRLRMQEWGIKQGI 248

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRHSFA+H+L + GDLR++Q +LGH  LS TQ+YT+++ ++    + ++YD 
Sbjct: 249 SSQVHPHKLRHSFASHILESSGDLRAVQELLGHSSLSATQVYTHLDFQH----LAKVYDN 304

Query: 317 THPSITQK 324
           THP   ++
Sbjct: 305 THPRAKKR 312


>gi|229815416|ref|ZP_04445748.1| hypothetical protein COLINT_02464 [Collinsella intestinalis DSM
           13280]
 gi|229808949|gb|EEP44719.1| hypothetical protein COLINT_02464 [Collinsella intestinalis DSM
           13280]
          Length = 308

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 83/320 (25%), Positives = 141/320 (44%), Gaps = 21/320 (6%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P  +  ELL +  +++  +    GLS  T+++Y      +  +   +  + +        
Sbjct: 3   PSSLQSELLAQIDDFIVFISCVEGLSPETVRAYGQHLEAYADWCESHAVDGLDP------ 56

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           S  ++R+++++ R       ++   LS ++SF ++L+       +  L     K+   LP
Sbjct: 57  SSRDLRSYLAEFRRDGRASTTVAAHLSALRSFFRWLEYSGHRAGAVPLATVAPKQRRELP 116

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             L  ++   L D   L        +  R++A+L L    G RISE   L   ++   + 
Sbjct: 117 HVLTAEELAALFDAPDLSCP-----VGLRDAAMLELFIATGARISELSRLELGDVCVAER 171

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNP 240
            + + GKG K RIVPL     +    Y +      L    L  +    +F   RG+ +N 
Sbjct: 172 QVCLLGKGSKERIVPLYARAIEVYERYLENGRPNLLRAPALGGDACRAVFVSDRGRAMNS 231

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              +     L+R  G+    T H +RH+FAT LL  G DLRS+Q +LGH  LSTTQIYT+
Sbjct: 232 DALRYRFDVLKRKAGISSDITPHAMRHTFATELLGGGADLRSVQELLGHASLSTTQIYTH 291

Query: 301 VNSKNGGDWMMEIYDQTHPS 320
           +      D +     + HP 
Sbjct: 292 LTP----DRLKSAVARAHPR 307


>gi|282878705|ref|ZP_06287473.1| phage integrase domain protein [Prevotella buccalis ATCC 35310]
 gi|281299096|gb|EFA91497.1| phage integrase domain protein [Prevotella buccalis ATCC 35310]
          Length = 292

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 74/304 (24%), Positives = 136/304 (44%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L  E+  S LT +SY  D R F  +     ++     T   +    IR ++  
Sbjct: 2   IEEFLNYLRFEKNRSTLTAKSYGDDLRAFERYFQGLGDQ----ITWESVDSDIIRGWMED 57

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S+ R LS ++S  +Y   R +   +  L +   K    LP+ L E +   L
Sbjct: 58  MMDRGNSATSICRRLSALRSLYRYSLSRGLVQVNPTLRIERPKMGKPLPQFLKESEMDEL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D     ++ +T + DA    I+   Y  G+R++E + L   ++       ++ GK +K 
Sbjct: 118 LD----ASTWDTSYQDALARTIIITFYETGMRLAELIGLDDVSVDFVNRQFKVLGKRNKQ 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VP    + + + EY +     + +      F    G  +N    +  +++    +   
Sbjct: 174 RLVPFGDELYQVLQEYLNQRNEQI-VRKSKAFFLSRNGVRMNHNQVRYLVKKNLSLVSTL 232

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T H LRH+FAT +L+NG  L ++Q +LGH  L TT+IYT+   +     + ++Y++ 
Sbjct: 233 KKRTPHVLRHTFATTMLNNGAGLENVQKLLGHESLETTEIYTHTTFEQ----LKKVYEKA 288

Query: 318 HPSI 321
           HP  
Sbjct: 289 HPRA 292


>gi|33599180|ref|NP_886740.1| site-specific tyrosine recombinase XerC [Bordetella bronchiseptica
           RB50]
 gi|33575226|emb|CAE30689.1| putative integrase/recombinase [Bordetella bronchiseptica RB50]
          Length = 326

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 92/335 (27%), Positives = 153/335 (45%), Gaps = 27/335 (8%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
              +  L +   +WL++L+  R  S  TL  Y  D                    + +++
Sbjct: 4   APAASPLPQPMADWLRHLQAHRRYSAHTLDGYTRD------LRQLAQLAAAAGLPLERVA 57

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
              IR F+++   Q +G RSL R+L+  + F ++         +    +R  K    LP+
Sbjct: 58  NGHIRHFVARLHAQGLGPRSLARALAAWRGFYQWWAPAAGLPGNPATGVRAPKAPRGLPK 117

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP--------- 178
           AL+ +Q   L+D+     +  T+    R+ A+  LLY  GLR++E +SL           
Sbjct: 118 ALSVEQTQVLLDHAPARLA--TEPAALRDHAMFELLYSSGLRLAELVSLDLHYERTPEYE 175

Query: 179 --QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL----FRG 232
               +  D + + + GKG K R VP+  S   A+ ++    P               F G
Sbjct: 176 SRSWLNRDDAEVIVVGKGGKRRSVPVGQSALAALDKWLQARPQLAAAGAGAQDAAALFVG 235

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
            RG+ + P V Q  + +L +  GLP     H LRHSFA+H+L +  DLR++Q +LGH  +
Sbjct: 236 TRGRRIAPRVVQLQLARLAQAAGLPAHVHPHVLRHSFASHVLQSAQDLRAVQEMLGHANI 295

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
           STTQ+YT ++ ++    +   YDQ HP   +K  +
Sbjct: 296 STTQVYTRLDFQH----LARAYDQAHPRAGRKTSR 326


>gi|315084829|gb|EFT56805.1| phage integrase, SAM-like domain protein [Propionibacterium acnes
           HL027PA2]
          Length = 331

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 90/337 (26%), Positives = 148/337 (43%), Gaps = 46/337 (13%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           + +++L++L +ERGLS  T+Q+Y  D  ++  +L         I ++ +++  ++  F  
Sbjct: 8   QAEDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLGSR-----GIGSLAEVTRVDVEEFRR 62

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                 +   S+ R +  +++  ++              M    +S  LP+AL+  Q  +
Sbjct: 63  HLDHIGLAPASVTRCVVAVRNLHRFAVGSGQLQADVTAGMSPGTRSRRLPKALSMDQVES 122

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----MDDQSTLRIQG 192
           L+          +     R++A+L LLYG G R+SE  +L   +I     D    LR+ G
Sbjct: 123 LL-----AAPDTSTVEGLRDAALLELLYGTGARVSEVCALDVDDIRPVLDDPDLGLRLIG 177

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNL---------------------------NI 225
           KGDK RIVPL     KA+  +                                     N 
Sbjct: 178 KGDKERIVPLGSYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAEIGNG 237

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQ 284
           +  L    RG+ L+       IR+     GL +   + H+LRHS+ATHLL  G D+R +Q
Sbjct: 238 EHALLLNTRGRRLSRQSAWAVIRRAGEAAGLDVEHLSPHSLRHSYATHLLDGGADVRVVQ 297

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            +LGH  ++TTQIYT V      D + E+Y  +HP  
Sbjct: 298 ELLGHSSVTTTQIYTLVT----ADHLREVYRSSHPRA 330


>gi|325002510|ref|ZP_08123622.1| site-specific tyrosine recombinase XerD [Pseudonocardia sp. P1]
          Length = 307

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 88/314 (28%), Positives = 141/314 (44%), Gaps = 22/314 (7%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  +++L +L +ERG ++ TL+SY  D  +++  LA        I  + ++  T++  F+
Sbjct: 6   RVVEDYLGHLAVERGRAQNTLRSYRLDLDRYVAHLA-----DAGIDDLGRVRETDVAGFV 60

Query: 76  SKRRT--QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +  RT  + +   S  R+L+ ++   ++              +      + LP AL   Q
Sbjct: 61  TALRTGERPLAASSAARALAAVRGLHRFAVLEGTVPADVAAGVAPPSLPSRLPTALTVDQ 120

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+   +            R+ A+L LLY  G RISE +     ++     T+ + GK
Sbjct: 121 VDQLLAGCVADGP-----TGLRDRALLELLYSTGGRISEIVGADLDDLDPGARTILLHGK 175

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GDK RIVP+      A+  Y      DL         L    RG  ++       +R   
Sbjct: 176 GDKQRIVPVGRPALAAVDAYRVRARPDLAGRGTGSPALLLNARGGRMSRQSAWHALRAAA 235

Query: 252 RYLGLPLST----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
              GL  +     + HTLRH FATHLLS G D+R +Q +LGH  ++TTQIYT+V      
Sbjct: 236 EASGLGPAVVAAVSPHTLRHCFATHLLSGGADVRVVQELLGHASVATTQIYTHVT----V 291

Query: 308 DWMMEIYDQTHPSI 321
           D + E+Y   HP  
Sbjct: 292 DTLREVYATAHPRA 305


>gi|91974776|ref|YP_567435.1| tyrosine recombinase XerD [Rhodopseudomonas palustris BisB5]
 gi|91681232|gb|ABE37534.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris
           BisB5]
          Length = 351

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 84/318 (26%), Positives = 134/318 (42%), Gaps = 24/318 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  +  E+G S  T+ +Y  D      +L        + ++I       +R +++  
Sbjct: 43  ELFLDMIAAEQGASANTIDAYRRDLADLSHYLTR------SRKSIASADTEALRGYLADL 96

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S+ R LS ++   ++L   +I  +     +   K+   LP+ L+      L+
Sbjct: 97  DARGFKSSSVARRLSALRHLFRFLLSERIRVDDPAAILSGPKRGRGLPKVLSIADVDRLL 156

Query: 139 DNVLLHTSHETKWID---ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
                             AR   +L +LY  GLR+SE +SL       D   + ++GKGD
Sbjct: 157 GYARQQAEAADGAGGVRAARLYCLLEVLYATGLRVSELVSLPSSAARGDARMIVVRGKGD 216

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDL---------NLNIQLPLFRGIRGK-PLNPGVFQR 245
           K R+VPL  S ++A+  Y                        LF        L    F R
Sbjct: 217 KERLVPLNHSAKQAMTRYLATAAAAEKAAATATKAGSKGSKWLFPSFGESGHLTRQHFAR 276

Query: 246 YIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            ++ L    GL P   + H LRH+FA+HLL NG DLR +Q++LGH  +STTQIYT+V   
Sbjct: 277 DLKDLAGRAGLSPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHV--- 333

Query: 305 NGGDWMMEIYDQTHPSIT 322
              D +  +    HP   
Sbjct: 334 -VEDRLKSLVRDLHPLAE 350


>gi|332184625|gb|AEE26879.1| site-specific recombinase [Francisella cf. novicida 3523]
          Length = 292

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 88/310 (28%), Positives = 154/310 (49%), Gaps = 21/310 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+   N+L+NL   +  S+ T+ +Y+ D  Q          + +  + I  L+Y++I  +
Sbjct: 4   LEHINNFLENLLYLKNYSQETINNYQKDLLQL--------NQALNDKNITSLTYSDILIW 55

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I K   Q    ++L+R LS ++SF  +L   +I T++    ++  K S  LP+ +N  + 
Sbjct: 56  IKKLHAQGNSPKTLQRKLSSVRSFFNFLINSEIVTQNPASGIKAPKSSKRLPKVVNTDEL 115

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D       + +  I+AR+ A   LLY CG+R+SE  S+  ++I   Q ++R+ GKG
Sbjct: 116 AYLLDV------NPSNDIEARDIACFDLLYSCGIRLSELSSIELKDISISQKSIRVTGKG 169

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +K RI    P     +  +  +   D        LF    GK L     Q+ +    +  
Sbjct: 170 NKQRITYFGPKTLSNLDRWLKIR--DTLKPNCNYLFISRDGKHLTNRSIQKRLEIFSQKY 227

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
                   H LRHSFA+H+L +  DL +++ +LGH  +S+TQIYT++N +     +  ++
Sbjct: 228 A-SRHIHPHMLRHSFASHMLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQ----LANVF 282

Query: 315 DQTHPSITQK 324
           D+ HP   +K
Sbjct: 283 DKAHPRAKKK 292


>gi|332882132|ref|ZP_08449766.1| putative tyrosine recombinase XerC [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332679883|gb|EGJ52846.1| putative tyrosine recombinase XerC [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 293

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 75/303 (24%), Positives = 136/303 (44%), Gaps = 13/303 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L +ER  S  T++ Y  D   F  +         +  +   +    +R ++   
Sbjct: 4   EAFLEYLTLERNYSLRTVEEYRDDLNAFESYYKKVD----STLSWETIDGDVVRDWMVSM 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   ++ R LS +++F +YL KR       + N++  KK   LP  L E +   L+
Sbjct: 60  MEAGRTATTVNRRLSALRTFYRYLLKRDWIKVDPVRNIQGPKKKKPLPVFLKESEMDRLL 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D         + ++  R+  I+   Y  G+R+SE   L  Q++      +++ GK +K R
Sbjct: 120 DGEFF----GSDFLGKRDKLIVNTFYVTGVRLSELTGLNNQDVDLWGGVIKVTGKRNKQR 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVP    +   +  Y D     L +     +F   +G+ L     +  +R     +    
Sbjct: 176 IVPFGRELEALLRTYLDEKS-SLGMEDGGAMFVDEKGERLTNVKVRNLVRHYLGMVTTQK 234

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FAT +L++  DL S++ +LGH  +STT+IYT+   +     + E+Y+Q H
Sbjct: 235 KRSPHVLRHTFATSMLNHHADLESLKELLGHESISTTEIYTHTTFEE----LKEMYNQAH 290

Query: 319 PSI 321
           P  
Sbjct: 291 PRA 293


>gi|253578510|ref|ZP_04855782.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850828|gb|EES78786.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 294

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 145/305 (47%), Gaps = 16/305 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E + ++  L   +  S  T  SY+ D ++   FL     ++  I+  + +   E+  +IS
Sbjct: 4   EIREFITYLHNTKKTSANTEISYQRDLKKMAEFL-----KERGIRNYKDVKELELEGYIS 58

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               +K    S+ RS++ +++F +YL K  +  E    N++  K     P  L  ++   
Sbjct: 59  YMEREKFASSSISRSVASMRAFFQYLWKEGVIAEDPADNLKPPKVEKRAPEILTIEEVDK 118

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+    L T         R+SA+L LLY  G+R+SE L L   ++      + +  +  K
Sbjct: 119 LLQQPKLDTPK-----GIRDSAMLELLYATGMRVSEMLHLQIFDVNLQFGYV-VCNENGK 172

Query: 197 IRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            RI+P+    +KA+  Y        +    +  LF    GK ++   F + ++      G
Sbjct: 173 ERIIPIGIPCKKAMERYLQTARTVFVKDEKETALFTNCSGKAMSRQGFWKVLKGYADDAG 232

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +      HTLRHSFA H+L NG D+RS+Q +LGH  +STTQ+Y  +N     + M ++Y 
Sbjct: 233 IKRDIAPHTLRHSFAVHMLQNGADIRSVQEMLGHSDISTTQVYLGMN----MNKMRDVYM 288

Query: 316 QTHPS 320
           +THP 
Sbjct: 289 KTHPR 293


>gi|111224556|ref|YP_715350.1| site-specific tyrosine recombinase [Frankia alni ACN14a]
 gi|111152088|emb|CAJ63815.1| site-specific tyrosine recombinase (partial match) [Frankia alni
           ACN14a]
          Length = 349

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 91/326 (27%), Positives = 144/326 (44%), Gaps = 35/326 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L +LE ERGL++ ++ +Y  D R++L  L+        + ++  +   E+  F +  R
Sbjct: 14  RYLHHLEGERGLAQNSVLAYRRDLRRYLNHLSAQ-----GLCSLDAVGEAEVAGFAAALR 68

Query: 80  TQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
                   +   S+ R L  ++S  ++  +    +E     +R       LP+AL+  Q 
Sbjct: 69  LGDETHPPLAAASVARMLVAVRSLHRFAAEEGDVSEDVSRPVRPPTPPRKLPKALSVDQV 128

Query: 135 LTLV-------------------DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
             ++                   D               R +A+L LLYG G RISEA+ 
Sbjct: 129 TAVLAAAAGTPRAGVAGVAGRAEDLAAAPVEPAEAVRRLRATALLELLYGTGARISEAVG 188

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIR 234
           L   ++  + + +R+ GKG + RIVPL      A+ +Y  L    L        +F   R
Sbjct: 189 LDVDDLDLESAAVRLHGKGGRDRIVPLGRCAVAALGDYLRLGRPSLAGPRSGAAVFLSRR 248

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G  L+       +R      G+    + H LRHSFATHLL  G D+R +Q +LGH  +ST
Sbjct: 249 GNRLSRQSAWTVLRTAADQAGVD-GVSPHVLRHSFATHLLDGGADVRVVQELLGHASVST 307

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPS 320
           TQIYT V      D + E+Y  +HP 
Sbjct: 308 TQIYTLVT----VDRLREVYATSHPR 329


>gi|257068193|ref|YP_003154448.1| site-specific recombinase XerD [Brachybacterium faecium DSM 4810]
 gi|256559011|gb|ACU84858.1| site-specific recombinase XerD [Brachybacterium faecium DSM 4810]
          Length = 332

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 95/329 (28%), Positives = 149/329 (45%), Gaps = 34/329 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +  +L +ERG S+ T+++Y  +    L  L   T E+IT+    +L  T +R+++S 
Sbjct: 13  LDAFADHLHLERGRSEHTVRAYRREAAGLLAHL--RTVERITLP---ELDVTALRSWLSA 67

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        +L RS + +++F  +L             +R  ++   LP  L   QA  L
Sbjct: 68  RAETGASASTLARSAASVRTFTTWLASTGRIPHDVGGRLRAPRRGRHLPTVLTGDQAGEL 127

Query: 138 VD-------------------NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           +D                             + +  R++A+L LLY  GLR+SE ++L  
Sbjct: 128 LDGLDGSARDDSAAPPREIAAAPRAEQDPRDRAVLLRDAAVLELLYSSGLRVSELVALDR 187

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL------NLNIQLPLFRG 232
             I     T+R++GKGD+ RIVP+     +A+  +       L             LF G
Sbjct: 188 SRIDRQHGTVRVRGKGDRERIVPVGLPALEALQRWESEGRPVLLAAATPGTPPGDALFLG 247

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +RG  L     +  + +     G+    T HTLRHS ATHL+  G DLRS+Q  LGH  L
Sbjct: 248 VRGGRLGDRAVRTLVDRHVAEAGISRHVTPHTLRHSAATHLVEGGADLRSVQDFLGHSSL 307

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           +TTQIYT+V+++     +    DQ HP  
Sbjct: 308 ATTQIYTHVSAER----LRRTVDQAHPRA 332


>gi|260655111|ref|ZP_05860599.1| integrase/recombinase XerD [Jonquetella anthropi E3_33 E1]
 gi|260630222|gb|EEX48416.1| integrase/recombinase XerD [Jonquetella anthropi E3_33 E1]
          Length = 319

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 84/317 (26%), Positives = 142/317 (44%), Gaps = 20/317 (6%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + +F+L      ++  + + +  S  T  +Y  D  QF  F     E       +  L+ 
Sbjct: 21  VAAFDLETWIGRYIDWISLAQNCSPATALNYRSDLEQFAAFAGQKGE-----ADLSALTP 75

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R FI       +   S+ R LS ++ F  YL  +        L +R  K  + LP+A
Sbjct: 76  ERVRLFIRGLSGWGLSATSVSRKLSALRGFCGYLTDQSAIPSDPTLPIRGPKWPDHLPQA 135

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L +     L+      ++  T    ARN  +L L Y  GLR++E +SL   ++ + +  +
Sbjct: 136 LTQDAVNRLI------SAAGTIEPAARNRCLLELAYSAGLRVAELVSLKWSDLDETERWI 189

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R+VP       A+ E+   CP     + +  +F G  GK L      R + 
Sbjct: 190 TVMGKGSKERMVPYGQWAASALAEWKAQCP----PSEKGWVFPGKGGKSLTERTVHRLVE 245

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
              +  G P   + HTLRH FATH+L  G  ++++Q +LGH  L TTQ Y  ++ +    
Sbjct: 246 AASQLAGTP-GASPHTLRHCFATHMLEGGASVKAVQELLGHESLLTTQRYLRISPER--- 301

Query: 309 WMMEIYDQTHPSITQKD 325
            +   YD  +  ++++D
Sbjct: 302 -LRRSYDDVNDDLSERD 317


>gi|126640334|ref|YP_001083318.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC
           17978]
          Length = 250

 Score =  236 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 80/256 (31%), Positives = 130/256 (50%), Gaps = 9/256 (3%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
             +  +I   + +        RS+ R LS ++ F K+L+++K+ +++ +    + K   +
Sbjct: 3   DWTSDDISDVLIELTKVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRA 62

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP+ L+E+    L+          T  +  R+ A+  +LY CGLR+SE L+L  + I   
Sbjct: 63  LPKDLSEEDVEALI-----QAPDITTALGLRDRAMFEVLYACGLRVSELLNLRLELINLK 117

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           Q  LRI GKG+K R+VPL       +  Y +     L  +    LF    G  ++   F 
Sbjct: 118 QGYLRITGKGNKERLVPLGQYACDWVERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFW 177

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             I+       +    + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V   
Sbjct: 178 YAIKHYALQANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQV 237

Query: 305 NGGDWMMEIYDQTHPS 320
                M +++++ HP 
Sbjct: 238 R----MQQLHEKHHPR 249


>gi|16127236|ref|NP_421800.1| integrase/recombinase XerD [Caulobacter crescentus CB15]
 gi|221236037|ref|YP_002518474.1| integrase/recombinase [Caulobacter crescentus NA1000]
 gi|34223000|sp|Q9A437|XERD_CAUCR RecName: Full=Tyrosine recombinase xerD
 gi|13424644|gb|AAK24968.1| integrase/recombinase XerD [Caulobacter crescentus CB15]
 gi|220965210|gb|ACL96566.1| integrase/recombinase (XerD/RipX family) [Caulobacter crescentus
           NA1000]
          Length = 305

 Score =  236 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 82/310 (26%), Positives = 132/310 (42%), Gaps = 18/310 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
             +L+ + +ER  ++ TL +Y  D      FL+           +       I A+    
Sbjct: 9   DAFLEMMAVERAAARNTLTAYGKDLEDARGFLSRSGH------DLHDADAETIEAYFQDL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   +  R  S ++ F +++      T+     +   K    LP+ L   +   L 
Sbjct: 63  GARGLSPATAARRRSAVRQFYRFVLGEGWRTDDPSRRVAAPKAGRPLPKVLERDEIERL- 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L   S +      R + ++ L+Y  GLRISE L+L    +  D + L ++GKG K R
Sbjct: 122 ---LAAASAKDSAQGLRLACMIELIYASGLRISELLALPLLALARDPAYLIVKGKGGKER 178

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGK-PLNPGVFQRYIRQLRRYLG 255
           + PL  + R A+  Y    P  L    +    LF        L P    + +       G
Sbjct: 179 LAPLNDAARAAVKAYLVERPAFLPKGQKDSPWLFPSRGATGRLTPRRVGQLLEDAAIAAG 238

Query: 256 LPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           +     + H LRH+FATHLL  G DLR IQ++LGH  ++TTQIYT+V  ++    +  I 
Sbjct: 239 IDRQKVSPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVAGEH----LAHIV 294

Query: 315 DQTHPSITQK 324
              HP   +K
Sbjct: 295 QTKHPLGRKK 304


>gi|332534422|ref|ZP_08410262.1| tyrosine recombinase XerC [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036156|gb|EGI72631.1| tyrosine recombinase XerC [Pseudoalteromonas haloplanktis ANT/505]
          Length = 314

 Score =  236 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 74/308 (24%), Positives = 152/308 (49%), Gaps = 21/308 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   L+ E+  S  T+  Y        ++ +   ++   +Q         IR +    R+
Sbjct: 22  FSDYLKFEKQYSAHTVNQYVSQLGFAALYFSKLCDDWFGVQG------EHIRRYSMALRS 75

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITT----ESNILNMRNLKKSNSLPRALNEKQALT 136
           +++  R++   LS I+S  K+LK + I       +  + ++  K +  LP+ L+  Q   
Sbjct: 76  KQLSGRTISLKLSCIRSLYKFLKAKNIAEQSHYHNPAIGIKGPKFAKPLPKNLDVDQMAR 135

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L++        + + +  R+ A++ L+Y  GLRISE +    Q+I      + ++GKG+K
Sbjct: 136 LLEIP------DDEPLAIRDKAMMELMYSSGLRISELVGANMQDISAANGEILVRGKGNK 189

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R++P+      A+ ++  + P     + ++ +F   +   ++    +  +++     G+
Sbjct: 190 ERLIPVGTKALDALKKWLTIRPQFAKPD-EIAVFLSSQKNRISIRQVRLRMQEWGIKQGI 248

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRHSFA+H+L + GDLR++Q +LGH  LS TQ+YT+++ ++    + ++YD 
Sbjct: 249 SSQVHPHKLRHSFASHILESSGDLRAVQELLGHSSLSATQVYTHLDFQH----LAKVYDN 304

Query: 317 THPSITQK 324
           THP   ++
Sbjct: 305 THPRAKKR 312


>gi|126666597|ref|ZP_01737575.1| Tyrosine recombinase XerC [Marinobacter sp. ELB17]
 gi|126628985|gb|EAZ99604.1| Tyrosine recombinase XerC [Marinobacter sp. ELB17]
          Length = 324

 Score =  236 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 87/318 (27%), Positives = 154/318 (48%), Gaps = 18/318 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-------KITIQTIRQL 66
           L +    ++++L  E+ LS LT + Y+ D  +   +L    +E       + +  + R L
Sbjct: 13  LFQGVDGFIRHLASEKRLSPLTCEHYQRDLLRLQRWLQEGYQEYSLNHSQEHSEISWRSL 72

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           +  +IR +++      +  RS+ R LS I+ F  YL +  +   S    +R  K    LP
Sbjct: 73  NSHDIRRYVAHLSRASLNGRSIARHLSAIRRFYHYLLREGLVDNSPAEAIRAPKSGRRLP 132

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
              +  Q   L+D      +     ++ R+  I  LLY  GLR++E  +L    +    +
Sbjct: 133 VVADVDQLTHLLD------AQADDPLELRDVCIFELLYSAGLRLAEVAALDLGTVELAAA 186

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            +++ GKG+K R++P+      A+  +  + P  L    Q  LF   RG  L+    Q  
Sbjct: 187 QVKVTGKGNKQRVLPVGRPALAALQAWLAVRPG-LAGAGQQALFVSRRGDRLSHRSIQAR 245

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           + +     G       H LRHSFA+HLL + GDLR++Q +LGH  ++TTQ+YT+++ ++ 
Sbjct: 246 LARWGLVKGADQKLHPHMLRHSFASHLLESSGDLRAVQELLGHADIATTQVYTHLDFQH- 304

Query: 307 GDWMMEIYDQTHPSITQK 324
              +  +YDQ+HP   ++
Sbjct: 305 ---LASVYDQSHPRAKRR 319


>gi|254466241|ref|ZP_05079652.1| phage integrase [Rhodobacterales bacterium Y4I]
 gi|206687149|gb|EDZ47631.1| phage integrase [Rhodobacterales bacterium Y4I]
          Length = 313

 Score =  236 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 87/326 (26%), Positives = 147/326 (45%), Gaps = 22/326 (6%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +P   +    +    +L     E G S+ TL +Y  D +    +L   +           
Sbjct: 1   MPAPAAN--FQWISTFLDAQAAETGASQNTLLAYGRDLKDLTAWLEHRS------LDFST 52

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
            S  +I A++     Q +   +  R LS +K   ++  +     ++  + +R   +   L
Sbjct: 53  ASQDDIEAYLISCDAQGLARSTRARRLSAVKQIYRFAFEEGWRQDNPAIQIRGPGREKRL 112

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P+ L   +   L++      +  ++    RN+ ++ LLY  G+R++E +SL       D 
Sbjct: 113 PKTLEVIEVDRLLEA--ARQTGRSEADRLRNTCLMELLYATGMRVTELVSLPVSAARGDP 170

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN------IQLPLFRGI-RGKPL 238
             L I GKG K R+VPL P  R+A+ ++  +     +            LF    +   L
Sbjct: 171 RMLLILGKGGKERMVPLSPPAREALAQWLLVRDAAEDERELKGNPASRFLFPSRGKSGHL 230

Query: 239 NPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
               F   I++L    GL P   T HTLRH+FATHLL+NG DLR+IQ++LGH  ++TT+I
Sbjct: 231 TRHRFYLLIKELAVTGGLSPDKVTPHTLRHAFATHLLANGADLRAIQALLGHADIATTEI 290

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQ 323
           YT+V        + E+  + HP   +
Sbjct: 291 YTHVLDAR----LQELVLEHHPLAKR 312


>gi|190570559|ref|YP_001974917.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|190356831|emb|CAQ54200.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
          Length = 306

 Score =  236 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 109/314 (34%), Positives = 172/314 (54%), Gaps = 10/314 (3%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L    + W   L+  R  S  TL+SY  D +  + FL  +  E++ + ++ +LS  E+R
Sbjct: 2   DLGSIIEKWYDWLKYNRSYSPNTLESYMRDLKDLISFLNTHIGEEVNVGSLEKLSIPELR 61

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           ++ + R  + +  RS  R+LS I++F KY+K         + ++    +  +LP+AL+  
Sbjct: 62  SWFTSRYARGVNARSNTRALSVIRNFFKYIKNNYEINNEAVFSLSRPIQRRTLPKALSIS 121

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
              TL+  + L       W+  R  AI+ LLYG GLRI+EAL+L   +I ++  +L + G
Sbjct: 122 NIETLLKEMKL-PDLGEPWVVKREIAIVVLLYGTGLRITEALNLKVSDISNE--SLIVTG 178

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KGDK R V +LP V+K I +Y   CP     +    LF G+RGK L        ++++RR
Sbjct: 179 KGDKQRQVFILPVVKKCIQKYIKACPH---FDEAGHLFVGVRGKKLGRTYVANRLQKIRR 235

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           +L LP   + H  RHSFATHLL    D+RSIQ +LGH  L TTQ+YT++N ++  +    
Sbjct: 236 FLNLPEILSPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQVYTHLNYQDVFN---- 291

Query: 313 IYDQTHPSITQKDK 326
           +Y     S+ +K K
Sbjct: 292 MYKNFQKSLNKKSK 305


>gi|300705544|ref|YP_003747147.1| site-specific tyrosine recombinase [Ralstonia solanacearum
           CFBP2957]
 gi|299073208|emb|CBJ44566.1| site-specific tyrosine recombinase [Ralstonia solanacearum
           CFBP2957]
          Length = 329

 Score =  236 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 91/324 (28%), Positives = 155/324 (47%), Gaps = 29/324 (8%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           +   +L  L+ ER LS  TL++Y  +       L            + +L    IR+ I+
Sbjct: 19  QIAAYLDVLKFERQLSPHTLENYTREL----AVLQRLGARFAAGVDLTRLLPHHIRSMIA 74

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNILNMRNLKKSNSLPRALNEKQAL 135
                 +  RS+ R+LS  + + K+L  R+   T + +  +R  K    LP+AL+ +QA+
Sbjct: 75  HLHGNGLSGRSIARALSVWRGWYKWLALREAAVTANPVDGVRAPKSPKRLPKALSVEQAV 134

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-----------MDD 184
            L++ +             R+ A+  L Y CGLR+SE + L  +++             +
Sbjct: 135 ALMEQL-----PGDDPETVRDRAVNELFYSCGLRLSELVGLDLRHVKAGDYASAGWLDLE 189

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF----DLNLNIQLPLFRGIRGKPLNP 240
              + + GKG+K R VP+     +A+  +  + P     D        LF   RGK L  
Sbjct: 190 AREVMVLGKGNKYRTVPVGSKAAEALAAWLAVRPQLARPDAAPEDAHALFLSARGKRLTQ 249

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              Q  +++     G+P     H LRHSFATH+L + GDLR++Q +LGH  +++TQ+YT+
Sbjct: 250 RQIQIRMKRNAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTS 309

Query: 301 VNSKNGGDWMMEIYDQTHPSITQK 324
           ++ ++    + +IYDQ HP   +K
Sbjct: 310 LDFQH----LAKIYDQAHPRAKKK 329


>gi|15677703|ref|NP_274864.1| integrase/recombinase XerC [Neisseria meningitidis MC58]
 gi|34223071|sp|Q9JXV6|XERC_NEIMB RecName: Full=Tyrosine recombinase xerC
 gi|7227126|gb|AAF42202.1| integrase/recombinase XerC [Neisseria meningitidis MC58]
 gi|325139527|gb|EGC62067.1| tyrosine recombinase XerC [Neisseria meningitidis CU385]
 gi|325200925|gb|ADY96380.1| tyrosine recombinase XerC [Neisseria meningitidis H44/76]
          Length = 301

 Score =  236 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 83/313 (26%), Positives = 148/313 (47%), Gaps = 17/313 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L      +L+N+  E G S+ T+ +Y  D     +       E++        +  +   
Sbjct: 6   LAAYLDAYLENIVRE-GKSEHTVAAYRRD-----LQELLALLEEMPSANPSNCTRGDFVQ 59

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            + +   + +G+R+L R LS  + +  +L KR +       +++  K+   +P+AL ++ 
Sbjct: 60  ALRRLSGRGLGERTLARKLSSWRQYCVWLVKRGLMHADPTADIKPPKQPERVPKALPQEW 119

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++D  +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GK
Sbjct: 120 LNRMLDLPV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVIGK 175

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R VPL+    +A+  Y  L     +      LF G  G  L+    Q+ + Q    
Sbjct: 176 GRKQRQVPLVGKSVEALKNYLPLRQTASDGK---ALFTGRNGTRLSQRQIQKRLAQWAAQ 232

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G     + H +RHS+A HLL    D+R++Q +LGH  LSTTQIYT ++     D +  +
Sbjct: 233 NGDGRHVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARL 288

Query: 314 YDQTHPSITQKDK 326
           YD+ HP   ++D+
Sbjct: 289 YDEAHPRAKRQDE 301


>gi|163741192|ref|ZP_02148584.1| tyrosine recombinase XerD [Phaeobacter gallaeciensis 2.10]
 gi|161385545|gb|EDQ09922.1| tyrosine recombinase XerD [Phaeobacter gallaeciensis 2.10]
          Length = 337

 Score =  236 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 83/325 (25%), Positives = 141/325 (43%), Gaps = 20/325 (6%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P     + L+    +L     + G ++ TL +Y  D +    +L                
Sbjct: 8   PANAPQDDLQWIATFLDAQAADLGAARNTLLAYGRDLKDVASWLGHKN------LDFGSA 61

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           S  +I A++     + +   +  R LS IK   ++       +++  + ++   +  +LP
Sbjct: 62  SRDDIEAYLIACDAEGLARATRARRLSAIKQIYRFAFDEGWRSDNPAIQIKGPGRQKALP 121

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L   +   L+D       + +  +  RN+ ++ LLY  G+R+SE + L       D  
Sbjct: 122 KTLEVIEVDRLLDAARQSGRNLSDRL--RNTCMMELLYATGMRVSELVGLPVAAARGDPR 179

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD------LNLNIQLPLFRGI-RGKPLN 239
            L + GKG K R+VPL P  R A+  +                     LF    +   L 
Sbjct: 180 MLLVLGKGGKERMVPLSPPARDALAAWLTTRDAAEEAAVAKGAAPSRFLFPSRGKSGHLT 239

Query: 240 PGVFQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              F   I++     GLP    + HTLRH+FATHLL+NG DLR+IQ++LGH  ++TT+IY
Sbjct: 240 RHRFYLLIKEFAVAGGLPPEAVSPHTLRHAFATHLLTNGADLRAIQALLGHADIATTEIY 299

Query: 299 TNVNSKNGGDWMMEIYDQTHPSITQ 323
           T+V        + E+  + HP   +
Sbjct: 300 THVLDAR----LSELVLEHHPLARK 320


>gi|294787035|ref|ZP_06752289.1| site-specific recombinase, phage integrase family [Parascardovia
           denticolens F0305]
 gi|315226683|ref|ZP_07868471.1| tyrosine recombinase XerC [Parascardovia denticolens DSM 10105]
 gi|294485868|gb|EFG33502.1| site-specific recombinase, phage integrase family [Parascardovia
           denticolens F0305]
 gi|315120815|gb|EFT83947.1| tyrosine recombinase XerC [Parascardovia denticolens DSM 10105]
          Length = 334

 Score =  236 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 91/344 (26%), Positives = 156/344 (45%), Gaps = 46/344 (13%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +  +   ++   L+  +GLS  +L++YE D  Q L FL  +         I+ ++   +R
Sbjct: 2   DFAELLHDYCLFLKDSKGLSPQSLKAYESDVDQCLHFLCLHGR-----TDIQSINTDYLR 56

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            ++S   ++K+   SL R +  ++ F  YL   K+   +    +   K   +LP  L +K
Sbjct: 57  MWMSY-ESRKVAKSSLARKIVAVRGFFAYLYTHKLIPSNPARPLGTPKLPKTLPAVLTQK 115

Query: 133 QALTLVDNVLL------------------------HTSHETKWIDARNSAILYLLYGCGL 168
           QA+ L+D                              + +   +D R+ AI+ +LY  G+
Sbjct: 116 QAVRLMDQAEEVCERDRDGQADRAETGKAKAELSKAEAEKKTLLDMRDDAIMEVLYATGI 175

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL------- 221
           R++E +SL   +I     T+++ GKG+K R+VP      +A+  +       L       
Sbjct: 176 RVAELVSLDVDDIDFTTRTVKVTGKGNKQRVVPFGKPAAEALDRWIRQGRDGLLDQAAPS 235

Query: 222 ----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
               +   +  +F G RGK +N    +  + +L R  G+P   + H LRHS ATHLL  G
Sbjct: 236 AAQGSAADRSAVFVGSRGKRINQRQVREVVHRLAREAGVP-DISPHALRHSAATHLLDGG 294

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            DLR +Q +LGH  L TTQ YT+V+ +     + + Y +  P  
Sbjct: 295 ADLREVQEMLGHSSLQTTQRYTHVSMEQ----LTKKYKRAFPRA 334


>gi|213964199|ref|ZP_03392435.1| tyrosine recombinase XerC [Capnocytophaga sputigena Capno]
 gi|213953166|gb|EEB64512.1| tyrosine recombinase XerC [Capnocytophaga sputigena Capno]
          Length = 308

 Score =  236 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 88/312 (28%), Positives = 153/312 (49%), Gaps = 9/312 (2%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              ++  L IE   S  T+++Y+ D R F  F+    E+K     + +    +I+ +I +
Sbjct: 3   INAFIIYLSIEMKYSIHTVEAYKHDLRAFEKFIKSEYEDKEEECPLERADQEDIKKWIIQ 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALT 136
              Q++  RS+ R LS +K++  +LKK K    S     +  LK         +E +   
Sbjct: 63  LSQQEMSFRSINRKLSALKTYYTFLKKTKQIEVSPFEKGIFLLKTEKRQKLPFSEAEIEK 122

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           ++       S ++ + + R+ A++ +LY  G+R SE  +L   ++   Q  L++ GKGDK
Sbjct: 123 VLSYF----SSKSSFDEVRDRAVIEMLYATGIRRSELANLRLSDVDLAQKQLKVSGKGDK 178

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R +P++P + + + EY  L     N   Q  LF    GK L   +  R I      +  
Sbjct: 179 ERYIPIIPELEETLKEYLKLREEVANEKSQNYLFLVKNGKKLYSTLVYRIINSYFSAVTP 238

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRHSFA+HLL NG DL +++ +LGH  L++TQ+YTN +       + + Y +
Sbjct: 239 KKDVSPHVLRHSFASHLLDNGADLNTVKELLGHSSLASTQVYTNTS----LAELKKQYKK 294

Query: 317 THPSITQKDKKN 328
            HP   +K++ +
Sbjct: 295 AHPRADRKEEDD 306


>gi|119469654|ref|ZP_01612523.1| site-specific recombinase [Alteromonadales bacterium TW-7]
 gi|119446901|gb|EAW28172.1| site-specific recombinase [Alteromonadales bacterium TW-7]
          Length = 314

 Score =  236 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 74/308 (24%), Positives = 147/308 (47%), Gaps = 21/308 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   L+ E+  S  T+  Y        ++     ++   +Q         IR +    R 
Sbjct: 22  FSDYLKFEKQYSAHTVNQYVSQLGFAALYFNKLCDDWFGVQ------AEHIRRYSMALRA 75

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITT----ESNILNMRNLKKSNSLPRALNEKQALT 136
           +++  R++   LS I+S  K+LK + I       +    ++  K +  LP+ L+  Q   
Sbjct: 76  KQLSGRTISLKLSCIRSLYKFLKAKNIAQQSHYHNPATGIKGPKFAKPLPKNLDVDQMAR 135

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L++        +   +  R+ A++ L+Y  GLRISE +    Q+I      + ++GKG+K
Sbjct: 136 LLEIP------DDDPLAIRDKAMMELMYSSGLRISELVGANMQDINAKSGEILVRGKGNK 189

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R++P+     +A+ ++  + P     +    +F   +   ++    +  +++     G+
Sbjct: 190 ERLIPVGTKALEALKKWLTVRPQFAKPDEPG-VFLSSQKNRISIRQVRLRMQEWGIKQGI 248

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRHSFA+H+L + GDLR++Q +LGH  LS TQ+YT+++ ++    + ++YD 
Sbjct: 249 SSQVHPHKLRHSFASHILESSGDLRAVQELLGHSSLSATQVYTHLDFQH----LAKVYDN 304

Query: 317 THPSITQK 324
           THP   ++
Sbjct: 305 THPRAKKQ 312


>gi|325853546|ref|ZP_08171378.1| phage integrase, N-terminal SAM domain protein [Prevotella
           denticola CRIS 18C-A]
 gi|325484350|gb|EGC87278.1| phage integrase, N-terminal SAM domain protein [Prevotella
           denticola CRIS 18C-A]
          Length = 294

 Score =  236 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 68/301 (22%), Positives = 134/301 (44%), Gaps = 13/301 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +ER  S +T+ SY  D   F  F      +     T   +    +R ++     
Sbjct: 7   FLDYLRLERNYSPMTVISYRKDLEAFERFCQELDPQ----ITWESVDTDVVRDWMEDMMD 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     S+ R +S ++SF ++  +  + ++  +  ++  ++   LP+ L E +   L+D 
Sbjct: 63  KGNAASSVNRRISALRSFYRFALRCGLVSKDPVHGLQGPRRQKPLPQFLKESEMEQLLDP 122

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                     + D     ++   Y  G+R+SE   L  +++ D    L++ GK +K RI+
Sbjct: 123 ----AMWTDGYEDVLARTLIVTFYETGIRLSELTGLDDRDVDDVTCELKVTGKRNKQRII 178

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P    + + +  Y  +       +    LFR  +G+ +     +  +++    +      
Sbjct: 179 PFGKELEETLAAYRCVRDARTG-DSSPTLFRTEKGERITNAQVRALVKKNLSKVSTLKKR 237

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           T H LRH+FAT +L++   L S++ +LGH  LSTT+IYT+   +     + ++Y   HP 
Sbjct: 238 TPHVLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQ----LKKVYKNAHPR 293

Query: 321 I 321
            
Sbjct: 294 A 294


>gi|126176181|ref|YP_001052330.1| tyrosine recombinase XerC [Shewanella baltica OS155]
 gi|125999386|gb|ABN63461.1| tyrosine recombinase XerC [Shewanella baltica OS155]
          Length = 306

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 81/312 (25%), Positives = 147/312 (47%), Gaps = 19/312 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  Q + + L  ER LS  T+++Y  +  +    L            +  +S    +  +
Sbjct: 14  QWLQTFERYLSTERQLSAHTVRNYLYELNRGSDLL-------PDGVNLLNVSREHWQQVL 66

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +K   + +  RSL   LS +K + ++L +  +   +    +   K++  LP+ ++     
Sbjct: 67  AKLHRKGLSPRSLSLCLSAVKQWGEFLLREGVIELNPAKGLSAPKQAKPLPKNIDVDAIS 126

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+D         T  +  R+ A++ L Y  GLR++E  +L   ++  D   +R+ GKG+
Sbjct: 127 HLLDI------EGTDPLSLRDKAMMELFYSSGLRLAELAALNLSSVQYDLKEVRVLGKGN 180

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RIVP+      A+L + +        +    LF   +GK L+    Q  + +  +   
Sbjct: 181 KERIVPVGRLAIAALLNWLNCRKQIPCEDN--ALFVTEKGKRLSHRSIQARMAKWGQEQA 238

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L +    H LRHSFATH+L    DLR++Q +LGH  L+TTQIYT+++ ++    + ++YD
Sbjct: 239 LSVRVHPHKLRHSFATHMLEASADLRAVQELLGHANLATTQIYTSLDFQH----LAKVYD 294

Query: 316 QTHPSITQKDKK 327
             HP   +   K
Sbjct: 295 NAHPRAKKTQDK 306


>gi|254445051|ref|ZP_05058527.1| site-specific recombinase, phage integrase family protein
           [Verrucomicrobiae bacterium DG1235]
 gi|198259359|gb|EDY83667.1| site-specific recombinase, phage integrase family protein
           [Verrucomicrobiae bacterium DG1235]
          Length = 307

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 96/306 (31%), Positives = 154/306 (50%), Gaps = 12/306 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + ++++L  ER LS  T+++YE     F  FL     +      + ++S  E R F+ +
Sbjct: 12  VEPFVRHLSGERRLSAYTVRNYEAALETFFQFLDT---DSKWGGNLGKVSLREARDFVIE 68

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           ++ +++  R+L   +SG+++F KY  ++     + ++ +   K    LP  + +KQ   L
Sbjct: 69  QQ-RRVSRRTLHNYVSGLRTFFKYWIRQGKLEANPLVGLVLPKLPKKLPAFMTQKQVKLL 127

Query: 138 VDNVLLHTSHE--TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +D  +L   +E  T +   R+  +L LLYG G R+SE   LT   +  D+   RI GKG 
Sbjct: 128 LDGPMLLLENESITAFQAWRDRLVLELLYGAGFRVSELCGLTYGQVSFDEGVARIVGKGG 187

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RI PL       + ++     F +      P+    R     P   Q  +++      
Sbjct: 188 KSRICPLGRVAMAVLDKW--RREFAVGTAFADPVVLSNRRVKWTPRGVQLLLKKYLALAD 245

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           LP+  T H +RHS+ATHLL NG DLR +Q +LGH +LSTTQIYT+VN       + E +D
Sbjct: 246 LPMDLTPHKIRHSYATHLLDNGADLRLVQELLGHAKLSTTQIYTHVN----IGRLKEAFD 301

Query: 316 QTHPSI 321
           Q HP  
Sbjct: 302 QAHPRA 307


>gi|227503375|ref|ZP_03933424.1| site-specific tyrosine recombinase XerC [Corynebacterium accolens
           ATCC 49725]
 gi|227075878|gb|EEI13841.1| site-specific tyrosine recombinase XerC [Corynebacterium accolens
           ATCC 49725]
          Length = 305

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 81/309 (26%), Positives = 142/309 (45%), Gaps = 19/309 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ++ +  +++       +G ++ T++ Y  D +               I T    +   +R
Sbjct: 16  QMDEAIEDFADFQLCVKGRAEATVRGYRADLKNLAQ----------DIDTFADFNLNNLR 65

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            ++     +     +L R  + +K+F  + ++    T      +   K    LP  +  +
Sbjct: 66  QWLGNAVAEGKARATLARRTASVKAFSTWAEREGYLTRDVAARLVTPKVGQHLPTVMAPQ 125

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           QA  LV N         +    R+SAIL LLY  G+R++E + L  +++   +ST R+ G
Sbjct: 126 QAGELVGN----AVSVDEAHFQRDSAILELLYASGMRVAELVRLDIEDVDFKRSTARVTG 181

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG+K R+VP   +   A+ ++ D    ++       +F G RG  ++    +R + +   
Sbjct: 182 KGNKQRVVPFGAAATDALQQWIDGGRKEMARGETQAIFVGSRGARIDQRQVRRIVDKAAT 241

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G     T H +RH  ATHLL  G DLR +Q +LGH  LSTTQIYT+V++K     + +
Sbjct: 242 VTG-TSGLTPHGVRHLAATHLLEGGADLRVVQELLGHSSLSTTQIYTHVSAKR----LKQ 296

Query: 313 IYDQTHPSI 321
           +Y Q HP  
Sbjct: 297 VYSQAHPRA 305


>gi|167752437|ref|ZP_02424564.1| hypothetical protein ALIPUT_00681 [Alistipes putredinis DSM 17216]
 gi|167660678|gb|EDS04808.1| hypothetical protein ALIPUT_00681 [Alistipes putredinis DSM 17216]
          Length = 309

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 100/312 (32%), Positives = 163/312 (52%), Gaps = 11/312 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q +LQ L   R  S LT+Q+Y  D   FL +L     +       R+++  ++R +I  
Sbjct: 2   LQEFLQYLATVRRFSPLTVQNYRRDVTNFLEWLDVPEADF----DPRRITVEDVREWIVH 57

Query: 78  R-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           R  T+ +G  S+ R LS ++SF +YL +     +  +  +  LK S  +P  +   +   
Sbjct: 58  RTETKHLGAASMNRELSSLRSFFRYLHRTGRIDKEVMYRIHALKTSRRIPAFVPSTRMEG 117

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           ++D  L   S   ++   RNS I+ L Y CGLR++E + +   +   D + L+++GKGDK
Sbjct: 118 ILDE-LDRESESPEFKFVRNSLIVLLFYSCGLRLAELVGIDRDDFSGDYTALKVRGKGDK 176

Query: 197 IRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            RIVP+LP VR+ IL Y D      + ++ +  LF   +GK ++     R ++   R  G
Sbjct: 177 ERIVPILPPVREKILHYLDEIDRQGICISKEKALFLNQQGKRISRSTVYRTVQSQLRQGG 236

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + H LRH+FAT LL+NG D+R+IQ +LGH  L  TQ+YT+    N    + +IY 
Sbjct: 237 VQGKKSPHVLRHTFATELLNNGADMRAIQELLGHASLQATQVYTH----NSIAKLQKIYS 292

Query: 316 QTHPSITQKDKK 327
           + HP      ++
Sbjct: 293 KAHPREKNGAEQ 304


>gi|119717469|ref|YP_924434.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119538130|gb|ABL82747.1| tyrosine recombinase XerC subunit [Nocardioides sp. JS614]
          Length = 312

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 82/322 (25%), Positives = 147/322 (45%), Gaps = 11/322 (3%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M        +   + +   ++ ++L  ER LS+ T+++Y  D    L   +   + +   
Sbjct: 1   MSEEEQSARLPEAMARALGDYERHLAAERDLSEHTVRAYIGDVAGLLEHASRLGQTEPG- 59

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
                L    +R++++K++T      +L R  +  + F  +L +   T      ++   K
Sbjct: 60  ----DLDLRTLRSWLAKQQTMGRSRTTLARRATAARVFTAWLARTGRTPLDAGASLGAPK 115

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
              +LP  L   +A  LV   + H    +  +  R+ A+L LLY  G+R+ E + L   +
Sbjct: 116 AHRTLPPVLRTDEAADLVRAAVEHADDGS-PVGLRDVAMLELLYATGIRVGELVGLDIDD 174

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLN 239
           +  +++ +R+ GKG K R VP      +A+  +       L +      LF G RG+ ++
Sbjct: 175 LDRERNVVRVLGKGRKERTVPFGRPAARAVDFWLKHGRPLLAVEGSGAALFLGARGRRID 234

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               +  + +    +        H LRH+ ATHLL  G DLRS+Q +LGH  L+TTQIYT
Sbjct: 235 QRAVRTVVHRRIAEVPGAPDIGPHGLRHTAATHLLEGGADLRSVQELLGHASLATTQIYT 294

Query: 300 NVNSKNGGDWMMEIYDQTHPSI 321
           +V+++     +   Y Q HP  
Sbjct: 295 HVSTER----LRRAYQQAHPRA 312


>gi|254463512|ref|ZP_05076928.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2083]
 gi|206680101|gb|EDZ44588.1| tyrosine recombinase XerD [Rhodobacteraceae bacterium HTCC2083]
          Length = 314

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 91/324 (28%), Positives = 147/324 (45%), Gaps = 20/324 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++ +  +    +L     E G +  T  +Y  D + F  +L+          +    +  
Sbjct: 3   LAVDYSRWISTFLDAQAAELGAATNTQLAYARDLKDFAEYLSGRK------LSFENAARD 56

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            + A++     Q +   +  R LS IK   ++  +    +++  + +    K   LP+ L
Sbjct: 57  HVEAYLIFCDAQGLAKSTRARRLSAIKQLYRFGFEEGWRSDNPAIQIAGPGKDKRLPKTL 116

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           N  +   L+    +     T  +  RN+ ++ LLY  G+R+SE +SL       + S L 
Sbjct: 117 NMGEVDGLLAAARVVGRSPTDRL--RNTCLMELLYATGMRVSELVSLPISAARGNPSMLL 174

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYY------DLCPFDLNLNIQLPLFRGI-RGKPLNPGV 242
           I+GKGDK R+VPL P  R A+ E+                 +   LF    +   L    
Sbjct: 175 IRGKGDKERMVPLSPPARDALTEWLETLDDLQEAGRLKGKAVSRFLFPSRGKEGHLTRHR 234

Query: 243 FQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           F   I++L  + G+P    T HTLRH+FATHLL NG DLRSIQ++LGH  ++TT+IYT+V
Sbjct: 235 FYILIKELSVHAGVPPAKVTPHTLRHAFATHLLENGADLRSIQTLLGHADVATTEIYTHV 294

Query: 302 NSKNGGDWMMEIYDQTHPSITQKD 325
                   + E+  Q HP     D
Sbjct: 295 LEAR----LQELVLQHHPLANDDD 314


>gi|163839844|ref|YP_001624249.1| XerC/XerD family integrase [Renibacterium salmoninarum ATCC 33209]
 gi|162953320|gb|ABY22835.1| integrase, XerC/XerD family [Renibacterium salmoninarum ATCC 33209]
          Length = 308

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 86/322 (26%), Positives = 150/322 (46%), Gaps = 15/322 (4%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M  + LP     E  +    + Q+L  ER  S+ T+++Y  D    +     Y      +
Sbjct: 1   MNESELP----VEFNRILSAFNQHLRAERARSEHTIRAYSADVESLM-----YYAIAAGV 51

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           ++I ++    IR ++ ++ +  +   +L R  +  ++ + +  + ++ +    L ++  K
Sbjct: 52  RSIDEIDLATIREWLGEQSSDGLARSTLARRAASTRTLMSWALREELISVDPTLRLKAPK 111

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +  +LP  L + Q   ++   L   + E      R+ AI+ LLY  GLR+ E   L   +
Sbjct: 112 RQKTLPGVLQQNQMARML-ADLASAAEEGSAAALRDLAIVELLYAAGLRVGELAGLDLDD 170

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLN 239
           +  ++ T+ + GKG+K R VP      +A+  +     P          LF G RG  ++
Sbjct: 171 LDFERRTVVVLGKGNKERSVPFGQPAARALQAWLQTGRPAFYREGSGAALFLGTRGGRID 230

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               +  +      LG   +T+ H LRH+ ATHLL  G DLR++Q ILGH  L+TTQIYT
Sbjct: 231 QRQIRSVVGSRFVALGDTSATSPHALRHTAATHLLDGGADLRAVQEILGHSSLATTQIYT 290

Query: 300 NVNSKNGGDWMMEIYDQTHPSI 321
           +V+     D +   Y Q HP  
Sbjct: 291 HVS----VDRLRSSYQQAHPRA 308


>gi|229918620|ref|YP_002887266.1| integrase family protein [Exiguobacterium sp. AT1b]
 gi|229470049|gb|ACQ71821.1| integrase family protein [Exiguobacterium sp. AT1b]
          Length = 293

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 87/307 (28%), Positives = 155/307 (50%), Gaps = 17/307 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
            L++RQ++L+  +IER LS  T +SYE    Q+  +     ++    QT         R 
Sbjct: 3   FLEDRQSFLRYCQIERRLSPHTKRSYEQTLDQYAAYCQSTHQDPYDAQTA--------RR 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++     +++   ++ + +S  K F K++ + +   E    ++ + KK  SLP      +
Sbjct: 55  YLYVLYEKQLAASTVSQKVSCFKQFGKFMAREQG-GEPLFHDLTSPKKKQSLPTFAVPTE 113

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++     +  +  ++ AR+ AI+ +LYG G+R++E   +   +  +  S + + GK
Sbjct: 114 VEQLLE---AASRQDDPFLQARDVAIIEVLYGTGIRVAELCGMNLSSFDEVLSFVHVMGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R VP+     +A+  Y +L    + L  +  LF   +G  +     +  +++LR+ 
Sbjct: 171 GKKERYVPIGQYAVQALQRYIELRKG-VGLPTETALFLSQKGNRMTTDQIRYVMKRLRKD 229

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    T H+LRHSFAT LL  G DLR++Q +LGH  LSTT  YT+V+++     +  I
Sbjct: 230 SGVHKPLTPHSLRHSFATDLLERGADLRAVQELLGHESLSTTGRYTHVSTER----LRSI 285

Query: 314 YDQTHPS 320
           Y  THP 
Sbjct: 286 YQATHPR 292


>gi|92115230|ref|YP_575158.1| phage integrase [Chromohalobacter salexigens DSM 3043]
 gi|123083908|sp|Q1QSU9|XERC_CHRSD RecName: Full=Tyrosine recombinase xerC
 gi|91798320|gb|ABE60459.1| phage integrase [Chromohalobacter salexigens DSM 3043]
          Length = 298

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 95/311 (30%), Positives = 151/311 (48%), Gaps = 19/311 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +    + +L +L      S  TL +Y  D      FL     E   I     L   ++R 
Sbjct: 1   MHAAVERFLHSLSG--HASPATLDAYRRDLTALARFL-----EASGIDDWAALDVAQVRR 53

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+   RT+ +  RSL R  + +  F  +L +  I   + +   +  ++   LPR ++  Q
Sbjct: 54  FMGAERTRGLAPRSLARRRAALSRFADHLVRSGILDHNPVALTQTPRQPRHLPRPVDVDQ 113

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
               +D     T H+   +  R+ A+L L Y CGLR++E  +L   +   D   LR+ GK
Sbjct: 114 LARFLD-----TPHDGTPLAVRDQAMLELFYSCGLRLAELTALDVTD--LDARRLRVVGK 166

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R +P+    + A+ ++Y L    L  + +  LF G RG  L     Q+ + QL R 
Sbjct: 167 GNKPRQMPIGRRAQAALADWYRLR-GQLAGHDEPALFVGQRGARLGHRAVQKRLAQLARE 225

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL      H LRHSFA+HLL +  DLR++Q +LGH  LSTTQ+YT ++ ++    + + 
Sbjct: 226 RGLAEHLHPHRLRHSFASHLLESSQDLRAVQELLGHANLSTTQVYTRLDWQH----LADA 281

Query: 314 YDQTHPSITQK 324
           YDQ HP   ++
Sbjct: 282 YDQAHPRARRR 292


>gi|242242534|ref|ZP_04796979.1| tyrosine recombinase XerC [Staphylococcus epidermidis W23144]
 gi|242233961|gb|EES36273.1| tyrosine recombinase XerC [Staphylococcus epidermidis W23144]
          Length = 286

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 78/301 (25%), Positives = 147/301 (48%), Gaps = 18/301 (5%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
            L++ER  S+ TL+SY  D  QF  FL     +      +    Y + R +++   + ++
Sbjct: 1   MLKVERNFSEYTLKSYHDDLVQFNNFLEREHLQ------LETFEYKDARNYLAFLYSNQL 54

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
              ++ R +S +++F ++   +  +  +  + + + KK   LP+   E++   L      
Sbjct: 55  KRTTVSRKISTLRTFYEFWMTQNNSIINPFVQLVHPKKEKYLPQFFYEEEMEALF----- 109

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
            T         R+  I+ LLY  G+R+SE +++  ++I  +   +++ GKG+K R +P  
Sbjct: 110 QTVEHDNKKGIRDKVIIELLYATGIRVSELINIKLKDIDMNLPGVKVLGKGNKERFIPFG 169

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTA 262
              R++I  Y +       L     L   ++G P+     +  +  + +   G+      
Sbjct: 170 EFCRQSIERYLEE-FQPKQLANHDYLIVNMKGDPITERGVRYVLNDVVKRTAGVN-DIHP 227

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++     + ++Y   HP   
Sbjct: 228 HKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQ----LRKVYLNAHPRAK 283

Query: 323 Q 323
           +
Sbjct: 284 K 284


>gi|221134095|ref|ZP_03560400.1| tyrosine recombinase [Glaciecola sp. HTCC2999]
          Length = 304

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 82/310 (26%), Positives = 148/310 (47%), Gaps = 21/310 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q + + L++ER  S  T  +Y               ++ +T++    L+  +++  +
Sbjct: 14  KWVQAFAEQLKVERQYSIHTQSAYINHI--------LVCKDLLTLKKWSSLTVEQVKRMV 65

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
              +   +  RS+   LS ++ F  +L ++   T++    +   K    LP+ L+ +Q  
Sbjct: 66  GLSKKAGLSARSIALRLSALRQFCHFLVEQHQLTQNPAEAVNAPKMGKPLPKHLHVEQLE 125

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L++             +AR+ A+  L+YGCGLR+SE   L   +++DD   L + GKG 
Sbjct: 126 GLLNFT------PESVHEARDKAMFELVYGCGLRLSEVTGLNLLDVLDDH-ILNVNGKGG 178

Query: 196 KIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R +P+     +A+ ++              +  LF   RG  L      + + QL   
Sbjct: 179 KQRRLPIGEHAWRAVQDWLLWRVQFITSAAPDEPALFLSQRGGRLGNRQVAKRLTQLATK 238

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    + H LRHSFATH+L + GDLR++Q +LGH  L+TTQ+YT+++ ++    +  +
Sbjct: 239 QGIDTHISPHKLRHSFATHVLESSGDLRAVQELLGHANLATTQVYTHLDFQH----LAGV 294

Query: 314 YDQTHPSITQ 323
           YD  HP   +
Sbjct: 295 YDNAHPRAKK 304


>gi|241667911|ref|ZP_04755489.1| phage integrase family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876451|ref|ZP_05249161.1| phage integrase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842472|gb|EET20886.1| phage integrase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 293

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 84/310 (27%), Positives = 148/310 (47%), Gaps = 21/310 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ++   N+L NL   +  S+ T+ +Y  D  Q            I  + I +L   +I  +
Sbjct: 4   IEHIDNFLDNLLYLKNYSQETINNYRRDLLQL--------NSSIVDKDITKLENNDILMW 55

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + K   Q    ++L+R LS ++SF  +L   ++   +    ++  K S  LP+A+N  + 
Sbjct: 56  VKKLHAQGNSSKTLQRKLSSLRSFFNFLINSELIKNNPTTGIKAPKSSKKLPKAVNTDEL 115

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D         +  I+ R+ A   LLY CG+R+SE  S+  ++I  +Q ++R+ GKG
Sbjct: 116 AYLLDI------KPSNNIETRDIACFDLLYSCGIRLSELSSIELKDININQKSIRVIGKG 169

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +K R+V         +  + ++   D        LF    G+ L     Q+ I    +  
Sbjct: 170 NKERVVYFGSKTLINLNRWLNIR--DTYSPKCNYLFISQNGEHLTNRSIQKRIEIFAKKY 227

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
                   H LRHSFATH+L +  DL +++ +LGH  +S+TQIYT++N +     +  ++
Sbjct: 228 A-TKHIHPHMLRHSFATHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQ----LASVF 282

Query: 315 DQTHPSITQK 324
           D+ HP   +K
Sbjct: 283 DKAHPRAKKK 292


>gi|126462249|ref|YP_001043363.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
 gi|126103913|gb|ABN76591.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 311

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 81/323 (25%), Positives = 144/323 (44%), Gaps = 20/323 (6%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + +  + +    +L+    E   ++ T  +Y  D + +  +L   +E+ +T       + 
Sbjct: 1   MEAAGMERWISAFLEAQAAELDAARNTRLAYGRDLKDYATWLGRRSEDFLTA------TR 54

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             + A+++    Q +   +  R LS I+   ++  +     ++  + +    +S  LP+ 
Sbjct: 55  DTVEAYLTFCEAQGLSSATRARRLSSIRQLYRFAHEEGWRADNPAIRISGPGRSKRLPKT 114

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L  ++   L++            I  RN  +L LLY  G+R+SE + L           +
Sbjct: 115 LEIEEVDWLLEAARDKGRRAEDQI--RNRCLLELLYATGMRVSEMVGLPVAAARGSPRMI 172

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCP------FDLNLNIQLPLFRGIRGK-PLNPG 241
            ++GKG K R+VPL P   +A+ ++                     LF G      L   
Sbjct: 173 LVRGKGGKERMVPLSPPACEALADWLRARDAAEAQGQKAGRPASRFLFPGSGAAGHLTRE 232

Query: 242 VFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            F   ++Q+    G+ P   T HTLRH+FATHLL+ G DLR IQ++LGH  LSTT+IYT+
Sbjct: 233 YFYVLVKQIAVLAGVDPAKVTPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTH 292

Query: 301 VNSKNGGDWMMEIYDQTHPSITQ 323
           V   +    + E+  + HP   +
Sbjct: 293 VLDAH----LKELVLKHHPLARE 311


>gi|253991592|ref|YP_003042948.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211638470|emb|CAR67092.1| tyrosine recombinase xerc [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253783042|emb|CAQ86207.1| tyrosine recombinase xerc [Photorhabdus asymbiotica]
          Length = 303

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 77/310 (24%), Positives = 149/310 (48%), Gaps = 17/310 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL+  + +L+ L +ER LS +T+ +Y          +       I ++    L   ++R 
Sbjct: 8   LLEPIEAFLRYLRVERRLSPVTIINYRRHLSALAEMVLA-----IDVRQWEDLDPAKVRM 62

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            + + R   +   +L   LS ++SFL +   + +   +    +        LP+ ++  +
Sbjct: 63  LVIRSRRAGLQSANLSLRLSSLRSFLDWQVTQGVMAVNPGKAVSTPGTKRHLPKNIDVDE 122

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++          + +  R+  +L ++YG GLR+SE + L  +++  +   + + GK
Sbjct: 123 VNQLLNINF------NEPLSVRDRTMLEVMYGAGLRLSELVGLDCRHLDLESGEVWVSGK 176

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R VPL  +  + +  + ++   +L       +F   RG+ ++    Q+   Q    
Sbjct: 177 GSKERKVPLGQTAVEWLNRWLEMR--ELFKPGDNAVFISNRGRRISTRNVQQRFAQWGIR 234

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+      H LRHSFATH+L + GDLR++Q +LGH  LSTTQ+YT+++ ++    + ++
Sbjct: 235 QGINSHIHPHKLRHSFATHILESSGDLRAVQELLGHASLSTTQVYTHLDFQH----LTKV 290

Query: 314 YDQTHPSITQ 323
           YD  HP   +
Sbjct: 291 YDVAHPRAKR 300


>gi|251810683|ref|ZP_04825156.1| tyrosine recombinase XerC [Staphylococcus epidermidis BCM-HMP0060]
 gi|293366784|ref|ZP_06613460.1| tyrosine recombinase XerC [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|251805843|gb|EES58500.1| tyrosine recombinase XerC [Staphylococcus epidermidis BCM-HMP0060]
 gi|291319085|gb|EFE59455.1| tyrosine recombinase XerC [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 286

 Score =  235 bits (599), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 78/301 (25%), Positives = 147/301 (48%), Gaps = 18/301 (5%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
            L++ER  S+ TL+SY  D  QF  FL     +      +    Y + R +++   + ++
Sbjct: 1   MLKVERNFSEYTLKSYHDDLVQFNNFLEREHLQ------LETFEYKDARNYLAFLYSNQL 54

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
              ++ R +S +++F ++   +  +  +  + + + KK   LP+   E++   L      
Sbjct: 55  KRTTVSRKISTLRTFYEFWMTQDNSIINPFVQLVHPKKEKYLPQFFYEEEMEALF----- 109

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
            T         R+  I+ LLY  G+R+SE +++  ++I  +   +++ GKG+K R +P  
Sbjct: 110 QTVEHDNKKGIRDKVIIELLYATGIRVSELINIKLKDIDMNLPGVKVLGKGNKERFIPFG 169

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTA 262
              R++I  Y +       L     L   ++G P+     +  +  + +   G+      
Sbjct: 170 EFCRQSIERYLEE-FQPKQLANHDYLIVNMKGDPITERGVRYVLNDVVKRTAGVN-DIHP 227

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++     + ++Y   HP   
Sbjct: 228 HKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQ----LRKVYLNAHPRAK 283

Query: 323 Q 323
           +
Sbjct: 284 K 284


>gi|221639249|ref|YP_002525511.1| Phage integrase family protein [Rhodobacter sphaeroides KD131]
 gi|221160030|gb|ACM01010.1| Phage integrase family protein [Rhodobacter sphaeroides KD131]
          Length = 311

 Score =  235 bits (599), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 81/323 (25%), Positives = 144/323 (44%), Gaps = 20/323 (6%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + +  + +    +L+    E   ++ T   Y  D + +  +L   +E+ +T       + 
Sbjct: 1   MEAAGMERWISAFLEAQAAELDAARNTRLGYGRDLKDYAAWLGRRSEDFLTA------TR 54

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             + A+++    Q +   +  R LS I+   ++  +     ++  + +    +S  LP+ 
Sbjct: 55  DTVEAYLTFCEAQGLSSATRARRLSSIRQLYRFAHEEGWRADNPAIRISGPGRSKRLPKT 114

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L  ++   L++               RN  +L LLY  G+R+SE + L       +   +
Sbjct: 115 LEIEEVDRLLEA--ARDKGRRAQDQIRNRCLLELLYATGMRVSEMVGLPVAAARGNPRMI 172

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCP------FDLNLNIQLPLFRGIRGK-PLNPG 241
            ++GKG K R+VPL P  R+A+ ++                     LF G      L   
Sbjct: 173 LVRGKGGKERMVPLSPPAREALADWLRARDAAEAQGQKAGRPASRFLFPGSGAAGHLTRE 232

Query: 242 VFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            F   ++Q+    G+ P   T HTLRH+FATHLL+ G DLR IQ++LGH  LSTT+IYT+
Sbjct: 233 YFYVLVKQIAVLAGVDPAKVTPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTH 292

Query: 301 VNSKNGGDWMMEIYDQTHPSITQ 323
           V   +    + E+  + HP   +
Sbjct: 293 VLDAH----LKELVLKHHPLARE 311


>gi|260575109|ref|ZP_05843110.1| integrase family protein [Rhodobacter sp. SW2]
 gi|259022731|gb|EEW26026.1| integrase family protein [Rhodobacter sp. SW2]
          Length = 313

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 86/324 (26%), Positives = 143/324 (44%), Gaps = 20/324 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +  E  +    +L     ER  ++ T   Y  D   F  +LA    +  T       S  
Sbjct: 1   MDAEAARWISGFLAAAAAERDAARNTQLGYGRDLADFADWLARQGGDFATA------SRA 54

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            + A++     Q +   +  R LS I+   ++  +     ++  L ++   ++  LP+ L
Sbjct: 55  TVEAYLVFCGAQGLAAATRARRLSSIRQLYRFAVEEGWRADNPALRLKGPAQAQHLPQVL 114

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  +   L+          T    ARN+A+L LLY  G+R+SE + L    +  D   + 
Sbjct: 115 SLAEVERLLQA--ARDKGRTGAEQARNAALLELLYATGMRVSELVGLPVAAVRGDPRMIL 172

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPF------DLNLNIQLPLFRGIRGK-PLNPGV 242
           ++GKG K R+VPL P  R A+ ++                     LF        L   V
Sbjct: 173 VRGKGGKERMVPLSPPARAALADWLAQRDTAEAVAVKAGKPASKHLFPNRSAAGHLGREV 232

Query: 243 FQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           F   I+ +    G+ P   T HTLRH+FATHLL+ G DLR IQ++LGH  ++TT+IYT+V
Sbjct: 233 FYALIKDIAVRAGVDPSKVTPHTLRHAFATHLLAGGADLRVIQTLLGHADIATTEIYTHV 292

Query: 302 NSKNGGDWMMEIYDQTHPSITQKD 325
             ++    + ++    HP    ++
Sbjct: 293 LDEH----LKDLVLTHHPLAKPRN 312


>gi|224824765|ref|ZP_03697872.1| tyrosine recombinase XerD [Lutiella nitroferrum 2002]
 gi|224603258|gb|EEG09434.1| tyrosine recombinase XerD [Lutiella nitroferrum 2002]
          Length = 296

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 81/306 (26%), Positives = 135/306 (44%), Gaps = 17/306 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           ++   +L  L +  GLS+ TL +Y  D  +    L       +    +  L    +    
Sbjct: 6   EQIDLFLDQLWLSDGLSRNTLSAYRRDLLKLGARLDEEGGVHLVEAGVADLQRALL---- 61

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                ++    +  R +S ++ F +YL       +     +   K    LP++L+EK  +
Sbjct: 62  --LGVEQEKATTRARLVSAMRRFYQYLHASGQRPDDPSAALERPKHGQPLPKSLSEKHVV 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L++            +  R+ A+L +LY  GLR+SE + LT Q +      +   GKG 
Sbjct: 120 ALLE-----APDVATPLGLRDRAMLEVLYATGLRVSELVGLTLQQVDLTSGVVMTLGKGG 174

Query: 196 KIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K R+VP+    +  +  Y     P  L       +F       +   +    I    R  
Sbjct: 175 KERLVPMGEVAQDWLGRYLATGRPALLTGVPCEQVFVTRLKAGMTRQMAWHLISGYARRQ 234

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           GLP   + HTLRH+FATHL+++G DLR +Q +LGH  +STTQIYT+V  +     +  ++
Sbjct: 235 GLP-PVSPHTLRHAFATHLVNHGADLRVVQLLLGHSDISTTQIYTHVARER----LRRLH 289

Query: 315 DQTHPS 320
           +Q HP 
Sbjct: 290 EQHHPR 295


>gi|262383756|ref|ZP_06076892.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|298375888|ref|ZP_06985844.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_19]
 gi|262294654|gb|EEY82586.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|298266925|gb|EFI08582.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_19]
          Length = 302

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 72/307 (23%), Positives = 148/307 (48%), Gaps = 13/307 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             ++L  L  ER  S  T+ +Y  D  QF  ++  + E    +    ++    +R++I  
Sbjct: 3   IDDFLNYLRYERNYSNYTIGAYSKDLDQFQRYVREHRE---GVFDPGEIDSDFVRSWIVS 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +K+   S+ R LS +KSF K+L KR I + + +  +   K    LP  + + +   L
Sbjct: 60  LMDEKLSPVSVNRKLSSLKSFFKFLMKRGIVSANPLRLVSGPKTKKPLPYFIKDSELEAL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D        +  +   RN  ++ +LY  G+R SE + +   ++  +   +++ GK +K 
Sbjct: 120 LD----GDGFDEDFEGVRNRLVIEMLYDTGMRRSELIGIRNVDVDYEAMQVKVTGKRNKQ 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R++P    ++  +L Y ++   ++    +   F    G  L+ G+    +++    + + 
Sbjct: 176 RLIPFAEGLKNLMLAYTEVRDREVEAAGE-WFFVRKNGNQLSTGIVYNIVKKQLSEIPML 234

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRHSFAT +L+NG +L +++ +LGH  L++T +YT+   +     + ++Y   
Sbjct: 235 AKRSPHVLRHSFATSMLNNGAELNAVKDLLGHSSLASTSVYTHTTFEE----LKKVY-HA 289

Query: 318 HPSITQK 324
           HP   ++
Sbjct: 290 HPRAKKE 296


>gi|260592787|ref|ZP_05858245.1| tyrosine recombinase XerD [Prevotella veroralis F0319]
 gi|260535318|gb|EEX17935.1| tyrosine recombinase XerD [Prevotella veroralis F0319]
          Length = 292

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 70/301 (23%), Positives = 138/301 (45%), Gaps = 13/301 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L++ER  S  T++ Y  D ++F  F     ++     +   +    +R ++     
Sbjct: 5   FLDYLKLERNYSPATVKHYRDDLKEFERFFQGLDQQ----LSWESVDSDIVRRWMEYMMD 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     S+ R LS ++SF +Y  +R +  +  +  ++  ++   LP+ L E +   L+D 
Sbjct: 61  KGNAASSVNRRLSALRSFYRYALRRNLVVKDPVHGIQGPRRKRPLPQFLKESEMDQLLDE 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +        + D     I+   Y  G+RISE + L  +++      +++ GK DK RI+
Sbjct: 121 RM----WTDSYKDVLARTIIVTFYETGVRISELIGLNDKDVDYINCEIKVTGKRDKQRII 176

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P    + K +  Y      +      +  FR  +GK +     ++ ++     +      
Sbjct: 177 PFGDELLKTLTAYQQQRDVETESE-SVAFFRTEKGKRVTDEQVRQMVKINLSKVSTLKKR 235

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H LRH+FAT +L++   L S++ +LGH  LSTT+IYT+   +     + ++Y+  HP 
Sbjct: 236 SPHVLRHTFATAMLNHDAGLESVKELLGHESLSTTEIYTHTTFEQ----LKKVYNNAHPR 291

Query: 321 I 321
            
Sbjct: 292 A 292


>gi|83951798|ref|ZP_00960530.1| tyrosine recombinase XerD [Roseovarius nubinhibens ISM]
 gi|83836804|gb|EAP76101.1| tyrosine recombinase XerD [Roseovarius nubinhibens ISM]
          Length = 314

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 86/314 (27%), Positives = 146/314 (46%), Gaps = 20/314 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L     E G +K TL +Y  D   F  ++   +       ++  L  +++ A++     
Sbjct: 10  FLDAQAAEMGAAKNTLMAYARDLSDFSQWVENKS------LSLATLQQSDVEAYLVHCDA 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q +   +  R LS +K   ++    ++  ++  L ++   +S  LP+ L+E +   L+  
Sbjct: 64  QGLAQSTRARRLSAVKQLYRFAFDERLRGDNPALRIKGPGRSGRLPKTLSEAEVDGLLQA 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
              H       +  RN+ ++ LLY  GLR++E +SL       +   L ++GKG K R+V
Sbjct: 124 ARSHGRGPADRL--RNTCLMELLYATGLRVTELVSLPVAATRGNPELLMVRGKGGKERMV 181

Query: 201 PLLPSVRKAILEYYDLCP------FDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRY 253
           PL P  + A+ ++               L     LF    +   L    F   I+ L   
Sbjct: 182 PLSPPAQVALRDWLAHRDAMEETARQKGLPASPFLFPSRSKDGHLTRHRFYLLIKDLAVA 241

Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+ P   T HTLRH+FATHLL+NG DLR+IQ++LGH  ++TT+IYT+V  +     +  
Sbjct: 242 AGVSPSKVTPHTLRHAFATHLLANGADLRAIQTLLGHADVATTEIYTHVLEER----LKS 297

Query: 313 IYDQTHPSITQKDK 326
           +    HP     D+
Sbjct: 298 LVMTHHPLADAADR 311


>gi|288803800|ref|ZP_06409227.1| tyrosine recombinase XerD [Prevotella melaninogenica D18]
 gi|288333707|gb|EFC72155.1| tyrosine recombinase XerD [Prevotella melaninogenica D18]
          Length = 294

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 69/304 (22%), Positives = 141/304 (46%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  ++ ER  S +T+ +Y  D  +F  F      +     +   +    +R ++  
Sbjct: 4   VEKFLDYIKFERNYSPMTVINYRKDLTEFERFYKELEPQ----LSWESIDSDIVRNWMEY 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S+ R LS ++SF ++  +RK+  +  +  ++  KK   LP+ L E +   L
Sbjct: 60  MMDRGNSASSVNRRLSALRSFYQFALRRKLIEKDPVHGLQGPKKQKPLPQFLKESEMERL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D+ +        + D     I+   Y  G+R+SE + L  ++I +    +++ GK +K 
Sbjct: 120 LDSKM----WTDSYKDVLERTIIITFYVTGIRLSELIGLDDKDIDNVTCEVKVTGKRNKQ 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RIVP    +     +Y ++    +  +  +  F+  +GK +     +  +++    +   
Sbjct: 176 RIVPFGKELADVFAQYQEVRNTTVKGD-SIAFFQTEKGKRMTTAQVRTLVKKNLSKVSTL 234

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FAT +L++   L S++ +LGH  LSTT+IYT+   +     + ++Y   
Sbjct: 235 KKRSPHVLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQ----LKKVYKNA 290

Query: 318 HPSI 321
           HP  
Sbjct: 291 HPRA 294


>gi|152967083|ref|YP_001362867.1| phage integrase family protein [Kineococcus radiotolerans SRS30216]
 gi|151361600|gb|ABS04603.1| phage integrase family protein [Kineococcus radiotolerans SRS30216]
          Length = 344

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 86/299 (28%), Positives = 143/299 (47%), Gaps = 16/299 (5%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
             L     ++L +L++ERGLS  TL +Y  D  +++ FLA        +    Q+    +
Sbjct: 21  AALRAAVGDYLAHLQVERGLSPNTLGAYRRDLARYVRFLAAR-----GVHDPAQVDEAVV 75

Query: 72  RAFISKRRTQKIGDRSLKRSLSG-----IKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
             F+   RT   G   L  S +      ++ + ++L     + +   + +R       LP
Sbjct: 76  SGFVVALRTGADGAAVLTASSAARTASAVRGWHRFLHAEGRSDQDPAVLVRPPTPPRRLP 135

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----M 182
            AL  ++   L++        E   +  R++A+L +LYGCG RISEA+ L   ++    +
Sbjct: 136 TALTVEEVRRLLEVAGPGGEGERSPVALRDAALLEVLYGCGARISEAVGLDVDDVTPEVL 195

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNP 240
            +   +R++GKG + R+VPL P  R A+  Y       L    +    LF   RG  L+ 
Sbjct: 196 GEGGLVRLRGKGSRERLVPLGPCARSALERYLARSRPQLAAQGRGTAALFLNTRGDRLSR 255

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                 ++   +  G+  + + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQ+Y 
Sbjct: 256 QSAWAVLQSAAQRAGIARAVSPHTLRHSFATHLLREGADVRVVQELLGHASVATTQVYA 314


>gi|326803545|ref|YP_004321363.1| phage integrase, N-terminal SAM domain protein [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651486|gb|AEA01669.1| phage integrase, N-terminal SAM domain protein [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 309

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 90/307 (29%), Positives = 154/307 (50%), Gaps = 11/307 (3%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + ++ E+  S  TL++Y  D   F+ FL     +++ I    QLSY +IR ++S  + + 
Sbjct: 12  EYIKDEKHYSDQTLKAYLSDFDDFISFLR----DELLISDFEQLSYRDIRLYLSHLQRKG 67

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +  +SL R LS +++       + +  ++    ++  K    LP    E +   L +   
Sbjct: 68  LSRKSLARHLSSLRTAFNRFLDQGLVKDNPFTYVQAAKTGLRLPDFFYEAELDPLFE--- 124

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
              +   + +D RN A+L  LY  G R+SE  +LT   +    S   + GKG K R VP 
Sbjct: 125 --AAKGPRALDKRNIALLEFLYATGARVSECTNLTITQVDLKNSIALLHGKGSKDRYVPF 182

Query: 203 LPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
               +KA+ EY D   P  L  +    +F   RG+ L P      +  L +     L   
Sbjct: 183 GSYCKKALEEYLDSGRPVLLKGHDHEYIFVNSRGEALTPSGVTYILNDLVKKSASNLDIH 242

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT-HPS 320
            H LRHSFATHLL++G D+R++Q +LGH  LS+TQIYT+++ ++  +  ++ + +  H  
Sbjct: 243 PHKLRHSFATHLLNHGADIRTVQELLGHSSLSSTQIYTHMSKESLRNNYLKYFPRAKHSD 302

Query: 321 ITQKDKK 327
           + ++DK+
Sbjct: 303 VHKEDKE 309


>gi|86741839|ref|YP_482239.1| tyrosine recombinase XerD [Frankia sp. CcI3]
 gi|86568701|gb|ABD12510.1| Tyrosine recombinase XerD [Frankia sp. CcI3]
          Length = 443

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 90/330 (27%), Positives = 146/330 (44%), Gaps = 36/330 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L +LE ERGL++ ++ +Y  D R++   L+        + ++  +   E+  F + 
Sbjct: 93  IERYLHHLEGERGLARNSVLAYRRDLRRYCDHLSAC-----GLPSLDAVGEAEVAGFAAV 147

Query: 78  RRTQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            RT       +   S+ R L  ++S  ++        E     +R       LP+AL+  
Sbjct: 148 LRTGDDTHPPLAAASVARMLVAVRSLHRFAADEGDVPEDVSRPVRPPTPPRRLPKALSID 207

Query: 133 QALTLVDNVLLHT----------------SHETKWIDARNS----AILYLLYGCGLRISE 172
           Q + ++                           +  +A       A+L LLYG G RISE
Sbjct: 208 QVVAVLAAAAGAPPPGSPPPSGRPQPSGRPQPVEPAEAVRRLRATALLELLYGTGARISE 267

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFR 231
           A+ L   ++  + +++R+ GKG + RIVPL      A+ +Y  +    L      P +F 
Sbjct: 268 AVGLDVDDLDLEAASVRLHGKGGRDRIVPLGRYAIAAVADYLRVGRPTLVAPRSGPAVFL 327

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
             RG  L+       +R      G+    + H LRHSFATHLL  G D+R +Q +LGH  
Sbjct: 328 SRRGNRLSRQSAWSVLRTAALAAGVE-GVSPHVLRHSFATHLLDGGADVRVVQELLGHAS 386

Query: 292 LSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           +STTQIYT V      D + E+Y  +HP  
Sbjct: 387 VSTTQIYTLVT----VDRLREVYAASHPRA 412


>gi|110680280|ref|YP_683287.1| tyrosine recombinase XerD [Roseobacter denitrificans OCh 114]
 gi|109456396|gb|ABG32601.1| tyrosine recombinase XerD [Roseobacter denitrificans OCh 114]
          Length = 323

 Score =  235 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 92/310 (29%), Positives = 142/310 (45%), Gaps = 20/310 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+    E G ++ TL +Y  D + F  +L   T            +  ++ A++    
Sbjct: 10  AFLEAQAAELGAARNTLLAYGRDLKDFEGYLHHRT------LDFATATQGDVEAYLIACD 63

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q +   +  R LS +K   ++  +    +++  L +    +   LP+ L+E +   L++
Sbjct: 64  AQGLSKATRARRLSAVKQLYRFAFEEGWRSDNPALQITGPGRDRKLPKTLSEAEVDRLLE 123

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                TS       ARN+ ++ LLY  G+R+SE +SL       D   L I+GKG K R+
Sbjct: 124 A--ARTSGRNAADRARNTCLMELLYATGMRVSELVSLPVSAARGDPRMLLIRGKGGKERM 181

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLN------IQLPLFRGIRGK-PLNPGVFQRYIRQLRR 252
           VPL P  R A  E+  L                  LF        L    F   I++L  
Sbjct: 182 VPLSPPARDATSEWLQLRDEKEAQKKTEGHPPSRFLFASRGVSGHLTRHRFYLLIKELAV 241

Query: 253 YLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             G+ P   T HTLRH+FATHLL+NG DLRSIQ++LGH  ++TT+IYT+V        + 
Sbjct: 242 NAGVSPSKVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLEAR----LS 297

Query: 312 EIYDQTHPSI 321
           E+    HP  
Sbjct: 298 ELVLTHHPLA 307


>gi|325269556|ref|ZP_08136172.1| site-specific tyrosine recombinase XerC [Prevotella multiformis DSM
           16608]
 gi|324988175|gb|EGC20142.1| site-specific tyrosine recombinase XerC [Prevotella multiformis DSM
           16608]
          Length = 297

 Score =  235 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 71/301 (23%), Positives = 136/301 (45%), Gaps = 13/301 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +ER  S +T+ SY  D  +F  F     E+     +   +    +R ++     
Sbjct: 10  FLDYLRLERNYSPMTVTSYRKDLEEFERFFQDLEEQ----LSWETVDSDVVRNWMEDMMD 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     S+ R LS ++SF ++  +R +     +  ++  K+   LP+ L E +   L++ 
Sbjct: 66  RGNAASSVNRRLSSLRSFYRFALRRSLVRRDPVHGLQGPKRQKPLPQFLKESEMERLLEP 125

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +        + D     ++   Y  G+R+SE   L  +++      L++ GK DK RI+
Sbjct: 126 GM----WTDSYKDVLARTLIMTFYETGVRVSELTGLDDKDVDGLTCELKVTGKRDKQRII 181

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P    + + +  Y  +    +  +    LFR  +G  +  G  +  +++    +      
Sbjct: 182 PFGRELAETLAAYRQVRGAAVKGD-SAALFRTEKGVRMTDGQVRALVKKHLSRVSTLKKR 240

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           T H LRH+FAT +L++   L S++ +LGH  LSTT+IYT+   +     + ++Y   HP 
Sbjct: 241 TPHVLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQ----LKKVYKNAHPR 296

Query: 321 I 321
            
Sbjct: 297 A 297


>gi|304394166|ref|ZP_07376089.1| tyrosine recombinase XerD [Ahrensia sp. R2A130]
 gi|303293606|gb|EFL87983.1| tyrosine recombinase XerD [Ahrensia sp. R2A130]
          Length = 308

 Score =  235 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 80/310 (25%), Positives = 135/310 (43%), Gaps = 17/310 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L+ +  ERG +  TL  Y  D   +            T  T+       +R ++++
Sbjct: 7   IESFLEMMSAERGAAANTLSGYGRDLADYSAHCRN------TRTTVMDAGAEHVRGWMAR 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    +  R LS ++   ++L    +  +     +   K    LP+ ++E     L
Sbjct: 61  LADSGCAASTQARKLSAVRQLYRFLFSDGLREDDPTATVDRPKTGRPLPKVISEIDVDRL 120

Query: 138 V----DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           +    D      +   +   AR  A+L LLY  GLR+SE ++L    I      + + GK
Sbjct: 121 LGAAQDAARKGETSAARLRAARTLALLELLYASGLRVSELVALRSATITPQTRFVNVTGK 180

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRR 252
           G K R+VP+  +  +A+  Y      D        LF        +    F R ++ L  
Sbjct: 181 GAKERLVPISAAALEAVEAYRQAA-RDHKQAPSAWLFPSRSAAGHITRQHFARDLKALAT 239

Query: 253 YLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             GLP    + H LRH+FA+HLL NG DLR++Q +LGH  ++TTQIYT+V  +     + 
Sbjct: 240 SAGLPASKLSPHVLRHAFASHLLQNGADLRAVQQLLGHADIATTQIYTHVLEER----LR 295

Query: 312 EIYDQTHPSI 321
           ++ +  HP  
Sbjct: 296 DLVETAHPLA 305


>gi|28198560|ref|NP_778874.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa
           Temecula1]
 gi|182681239|ref|YP_001829399.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa M23]
 gi|73920482|sp|Q87DN0|XERD_XYLFT RecName: Full=Tyrosine recombinase xerD
 gi|28056644|gb|AAO28523.1| integrase/recombinase [Xylella fastidiosa Temecula1]
 gi|182631349|gb|ACB92125.1| tyrosine recombinase XerD [Xylella fastidiosa M23]
 gi|307579687|gb|ADN63656.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 324

 Score =  235 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 92/308 (29%), Positives = 144/308 (46%), Gaps = 24/308 (7%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L  L I+ GLS+ TL SY  D      +             +  L+   +  +++ R  Q
Sbjct: 31  LDALWIKHGLSRHTLNSYRRDLEGLARWNNGRAG------PLATLTPPALLDYLTWRTQQ 84

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                S  R  S +++F  Y  +     ++    + +    + LP+AL E Q   L+   
Sbjct: 85  HYSPLSNARLRSVLRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQIEALLAAP 144

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
            + T         RN A+L L+Y  GLR+SE ++L    +   Q  LRI GKG K R+VP
Sbjct: 145 SIETPE-----GLRNRAMLELMYAAGLRVSELVTLPVAMLNQRQGVLRITGKGGKERLVP 199

Query: 202 LLPSVRKAILEYYDLCPFDLNLNI--------QLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           L    +  +  Y +     L  +          +PLF     K L+   F R+I+     
Sbjct: 200 LGEESQHWLQRYLEQARPSLAADKPIPADSDGDVPLFINTNLKRLSRQQFWRWIKHYAAL 259

Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           +G+ P   + H LRHSFATHLL++G DLR++Q +LGH  +STTQIYT +  ++    + +
Sbjct: 260 VGIAPNKVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTLIARQH----LQQ 315

Query: 313 IYDQTHPS 320
           ++ Q HP 
Sbjct: 316 LHAQHHPR 323


>gi|319639109|ref|ZP_07993866.1| tyrosine recombinase xerC [Neisseria mucosa C102]
 gi|317399687|gb|EFV80351.1| tyrosine recombinase xerC [Neisseria mucosa C102]
          Length = 298

 Score =  235 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 82/309 (26%), Positives = 148/309 (47%), Gaps = 20/309 (6%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             + +L+ L  ++G S+ T+ +Y  D  + +  L    E  +        +  +  A + 
Sbjct: 10  HLERYLKTLS-QQGKSQHTVSAYRRDLSELMRLLPDNLENGLP-------TRRDFVAALK 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           K   + + + SL R LS  + +  +L + ++       NM+  +    LP+AL ++    
Sbjct: 62  KLSQKGLSESSLARKLSAWRQYCSWLVQIEVMESDPTFNMKAPRLPERLPKALPQEPLNH 121

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           ++D+     +     +D R+ A+  L+YG GLR+SE   L   +I+ D+  + + GKG K
Sbjct: 122 ILDH-----APVDDELDVRDKAMFELMYGSGLRLSEIQGLNLNSIVLDEGWVSVNGKGGK 176

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R VPL+     A+ +Y  +    +    +  LF    G  L     Q+ ++     +G 
Sbjct: 177 QRQVPLVAKSIAALRDYLAVR---IAKEGEQALFTNKNGGRLGQRQIQKRLQAWAVRVGS 233

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H +RHS+ATHLL   GD+R++Q +LGH  LS TQ+YT ++     D +  +YD+
Sbjct: 234 ASHISPHMMRHSYATHLLQASGDIRAVQELLGHSNLSATQVYTKLDF----DHLARVYDE 289

Query: 317 THPSITQKD 325
            HP   +K 
Sbjct: 290 AHPRAKRKK 298


>gi|309789594|ref|ZP_07684175.1| phage integrase family protein [Oscillochloris trichoides DG6]
 gi|308228330|gb|EFO81977.1| phage integrase family protein [Oscillochloris trichoides DG6]
          Length = 294

 Score =  235 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 83/289 (28%), Positives = 147/289 (50%), Gaps = 11/289 (3%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++ + +L ++  ++  S+ T  +Y  D  Q  +FLA        +   + +++ +I A
Sbjct: 1   MHEQIEQFLVSMATDQMRSEHTCSAYRTDLEQLRLFLAARE-----VADWQAVTHDDILA 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+   R +     ++ R  + +KSF  +L +++I  +    ++ + K +   P+A+ +  
Sbjct: 56  FMISLRERGYAMSTMARRTAAMKSFFGFLLEQQIIKKDPTSHIDSPKVNRDRPKAITQFD 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++  L  +  E+     R+ A+L LL   G+R+SE ++L   +I     T+R + K
Sbjct: 116 MDELLELPLRSSGPES----LRDKAMLELLAATGMRVSELVTLELADISLSAGTVRCRSK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRR 252
             + R++P+  +   A+ EY D+    L  + + P LF   RGK L    F   ++    
Sbjct: 172 SGRERVLPIGLTATTALEEYLDIARNQLVRSGETPILFLNHRGKQLTRQGFWLILKGYAD 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            +GL    T HTLRHSFA HL+  G DLR +Q  LGH  LSTTQIYT +
Sbjct: 232 QIGLH-DLTPHTLRHSFAAHLVYEGADLREVQERLGHASLSTTQIYTQM 279


>gi|332558273|ref|ZP_08412595.1| integrase/recombinase XerD [Rhodobacter sphaeroides WS8N]
 gi|332275985|gb|EGJ21300.1| integrase/recombinase XerD [Rhodobacter sphaeroides WS8N]
          Length = 311

 Score =  235 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 81/323 (25%), Positives = 145/323 (44%), Gaps = 20/323 (6%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + +  + +    +L+    E   ++ T  +Y  D + +  +L   +E+ +T       + 
Sbjct: 1   MEAAGMERWISAFLEAQAAELDAARNTRLAYGRDLKDYATWLVRRSEDFLTA------TR 54

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             + A+++    Q +   +  R LS I+   ++  +     ++  + +    +S  LP+ 
Sbjct: 55  DTVEAYLTFCEAQGLSSATRARRLSSIRQLYRFAHEEGWRADNPAIRISGPGRSKRLPKT 114

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L  ++   L++               RN  +L LLY  G+R+SE + L       +   +
Sbjct: 115 LEIEEVDRLLEA--ARDKGRRAQDQIRNRCLLELLYATGMRVSEMVGLPVAAARGNPRMI 172

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCP------FDLNLNIQLPLFRGIRGK-PLNPG 241
            ++GKG K R+VPL P  R+A+ ++                     LF G      L   
Sbjct: 173 LVRGKGGKERMVPLSPPAREALADWLRARDAAEAQGQKAGRPASRFLFPGSGAAGHLTRE 232

Query: 242 VFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            F   ++Q+    G+ P   T HTLRH+FATHLL+ G DLR IQ++LGH  LSTT+IYT+
Sbjct: 233 YFYVLVKQIAVLAGVDPAKVTPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTH 292

Query: 301 VNSKNGGDWMMEIYDQTHPSITQ 323
           V   +    + E+  + HP   +
Sbjct: 293 VLDAH----LKELVLKHHPLARE 311


>gi|255014711|ref|ZP_05286837.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 302

 Score =  235 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 72/307 (23%), Positives = 148/307 (48%), Gaps = 13/307 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             ++L  L  ER  S  T+ +Y  D  QF  ++  + E    +    ++    +R++I  
Sbjct: 3   IDDFLNYLRYERNYSNYTIGAYSKDLDQFQRYVREHRE---GVFNPGEIDSDFVRSWIVS 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +K+   S+ R LS +KSF K+L KR I + + +  +   K    LP  + + +   L
Sbjct: 60  LMDEKLSPVSVNRKLSSLKSFFKFLMKRGIVSANPLRLVSGPKTKKPLPYFIKDSELEAL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D        +  +   RN  ++ +LY  G+R SE + +   ++  +   +++ GK +K 
Sbjct: 120 LD----GDGFDEDFEGVRNRLVIEMLYDTGMRRSELIGIRNVDVDYEAMQVKVTGKRNKQ 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R++P    ++  +L Y ++   ++    +   F    G  L+ G+    +++    + + 
Sbjct: 176 RLIPFAEGLKNLMLAYTEVRDREVEAAGE-WFFVRKNGNQLSTGIVYNIVKKQLSEIPML 234

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRHSFAT +L+NG +L +++ +LGH  L++T +YT+   +     + ++Y   
Sbjct: 235 AKRSPHVLRHSFATSMLNNGAELNTVKDLLGHSSLASTSVYTHTTFEE----LKKVY-HA 289

Query: 318 HPSITQK 324
           HP   ++
Sbjct: 290 HPRAKKE 296


>gi|291561258|emb|CBL40057.1| tyrosine recombinase XerD subunit [butyrate-producing bacterium
           SS3/4]
          Length = 284

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 134/297 (45%), Gaps = 15/297 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +E E+  SK T  SY+ D  +   +L     E+  I    +++ T + ++I     +   
Sbjct: 1   MEEEKHASKNTTLSYQRDLLKMADYL-----EENGITDCGKVTKTALNSYILFLEKEGKA 55

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             ++ R+L+  +SF  +L K          +M   K    +P  L   +   L++     
Sbjct: 56  ASTVSRALASTRSFFGWLFKEGRIRRDPADSMHAPKIEKKVPVILTVDEVTKLLEQPSGA 115

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
              E +     + A+L LLY  G+R++E ++L   ++      +  + +    R++P   
Sbjct: 116 NPKEIR-----DKAMLELLYATGIRVTELVNLKLSDVNMSIGFITCRDEHK-ERMIPFGH 169

Query: 205 SVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           + + A+ +Y +      L       LF    G+ ++   F + I+      G+    T H
Sbjct: 170 AAKDALAKYLESASETFLKGTRSELLFTNYSGRAMSRQGFWKIIKYYGERAGIEEDITPH 229

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           TLRHSFA HLLSNG D+R++Q+++GH  L++TQ+YT          + E Y   HP 
Sbjct: 230 TLRHSFAAHLLSNGADMRAVQTMMGHSDLASTQMYTAYA---MDSAVREAYQGAHPR 283


>gi|95929339|ref|ZP_01312082.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
 gi|95134455|gb|EAT16111.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
          Length = 297

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 93/311 (29%), Positives = 154/311 (49%), Gaps = 14/311 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +      + + L +ER L+  T  +Y  D + F  F+     E++    +  +    +R 
Sbjct: 1   MTTWLDEFSRYLSVERNLASHTQTAYLRDVQAFCDFICGEHREQLK-TLLPAVEKHTLRR 59

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++++         ++ R ++ I+SF  +L+++     +  L +R  +    LP  L+   
Sbjct: 60  WMAQLLKNNKKV-TVARKVASIRSFYSFLQRQGHVEHNPALQVRLPRVERYLPTTLDVDY 118

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D        ++     R+ A   LLY  GLR+ E ++L   ++  DQ+ +R+ GK
Sbjct: 119 MYHLLD-----APGDSTLQSLRDRAAFELLYSSGLRVGELVALNVADLDFDQALVRVLGK 173

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K RIVP+     +A++ Y +            PL    +G  L+    QR +++    
Sbjct: 174 GGKQRIVPVGSKALQALMAYLERRGV---TERDEPLLVNRQGTRLSARTVQRNLKKKLLQ 230

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           LGLP + T H+LRHSFATHLL  G DLR+IQ +LGH  LSTTQ YT V++    D MM+ 
Sbjct: 231 LGLPTTATPHSLRHSFATHLLDEGADLRAIQEMLGHQSLSTTQKYTQVST----DRMMKE 286

Query: 314 YDQTHPSITQK 324
           YD+ HP   +K
Sbjct: 287 YDRAHPRSRKK 297


>gi|33594905|ref|NP_882548.1| site-specific tyrosine recombinase XerC [Bordetella parapertussis
           12822]
 gi|33564981|emb|CAE39928.1| putative integrase/recombinase [Bordetella parapertussis]
          Length = 326

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 91/335 (27%), Positives = 153/335 (45%), Gaps = 27/335 (8%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
              +  L +   +WL++L+  R  S  TL  Y  D                    + +++
Sbjct: 4   APAASPLPQPMADWLRHLQAHRRYSAHTLDGYTRD------LRQLAQLAAAAGLPLERVA 57

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
              IR F+++   Q +G RSL R+L+  + F ++         +    +R  K    LP+
Sbjct: 58  NGHIRHFVARLHAQGLGPRSLARALAAWRGFYQWWAPAAGLPGNPATGVRAPKAPRGLPK 117

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI------ 181
           AL+ +Q   L+D+     +  T+    R+ A+  LLY  GLR++E +SL  +        
Sbjct: 118 ALSVEQTQVLLDHAPARLA--TEPAALRDHAMFELLYSSGLRLAELVSLDLRYERTPEYE 175

Query: 182 -----MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL----FRG 232
                  D + + + GKG K R VP+  S   A+ ++    P               F G
Sbjct: 176 SRSWLNRDDAEVIVVGKGGKRRSVPVGQSALAALDKWLQARPQLAAAGAGAQDAAALFVG 235

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
            RG+ + P V Q  + +L +  GLP     H LRH+FA+H+L +  DLR++Q +LGH  +
Sbjct: 236 TRGRRIAPRVVQLQLARLAQAAGLPAHVHPHVLRHNFASHVLQSAQDLRAVQEMLGHANI 295

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
           STTQ+YT ++ ++    +   YDQ HP   +K  +
Sbjct: 296 STTQVYTRLDFQH----LARAYDQAHPRADRKTSR 326


>gi|192288937|ref|YP_001989542.1| tyrosine recombinase XerD [Rhodopseudomonas palustris TIE-1]
 gi|192282686|gb|ACE99066.1| tyrosine recombinase XerD [Rhodopseudomonas palustris TIE-1]
          Length = 339

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 139/305 (45%), Gaps = 15/305 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  +  E+G S  TL +Y  D      FL+          +I       +R++++  
Sbjct: 35  ELFLDMIAAEQGASANTLDAYRRDLADLSHFLSRRR------LSIGSADTAALRSYLADL 88

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S+ R LS ++   ++L   +I  +     +   K+  SLP+ L+      L+
Sbjct: 89  DNRGFATSSVARRLSALRHLFRFLLSERIRADDPAAILAGPKRGRSLPKVLSIADVDRLL 148

Query: 139 ---DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
                 +       +   AR + +L +LY  GLR+SE +SL       D   + ++GKGD
Sbjct: 149 ACARQEIDAAEGGARLRAARLNCLLEVLYATGLRVSELVSLPLSAARRDARMIVVRGKGD 208

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGK-PLNPGVFQRYIRQL 250
           K R+VPL    ++A+  Y +            P    LF        L    F R ++ L
Sbjct: 209 KERLVPLNAGAKQAMARYLEEVAVATKETKGAPASKWLFPSFGESGYLTRQHFARDLKDL 268

Query: 251 RRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
               GL P   + H LRH+FA+HLL NG DLR +Q++LGH  +STTQIYT+V  +     
Sbjct: 269 AARAGLSPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEERLKSL 328

Query: 310 MMEIY 314
           + +++
Sbjct: 329 VRDLH 333


>gi|68171192|ref|ZP_00544598.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88658398|ref|YP_507161.1| phage integrase family site specific recombinase [Ehrlichia
           chaffeensis str. Arkansas]
 gi|67999386|gb|EAM86029.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88599855|gb|ABD45324.1| site-specific recombinase, phage integrase family [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 311

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 113/319 (35%), Positives = 171/319 (53%), Gaps = 11/319 (3%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +   +L      W+  ++ ER  +  T+ SY  D  +F+ FL       +T++ I  +  
Sbjct: 1   MKDQKLCIVVNEWVSWIKKERRYATNTVDSYLRDVNKFIEFLYMCVLRPVTLEDIIGVKV 60

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++R + + R    I   +  RSLS +K+F +YL +        +  +   K  ++LPR 
Sbjct: 61  ADLRKWFAFRYQANIEAVTNARSLSALKNFFRYLSRTYNIDGQAVFCLSRPKLKSTLPRT 120

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L +     ++D   L    +T WI  R+ A++ LLYGCGLRISEA++L  QNI   +  L
Sbjct: 121 LTQSHIQKIIDYYALL---DTDWIVKRDFALIVLLYGCGLRISEAVNLKFQNI--RREEL 175

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            I GK  K RI+P+LP VR+++ EY   C    +LN      +F G+RGK L    F   
Sbjct: 176 LIIGKRSKERILPILPIVRQSLDEYVRCCPYHMELNSVKNEYVFVGVRGKKLKRTYFANR 235

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           I+++ + +GLP   T H  RHSFATHL   G D+RSIQ +LGH  LSTTQIYT+++ K+ 
Sbjct: 236 IQKICKEIGLPDVITPHAFRHSFATHLFLGGADIRSIQELLGHANLSTTQIYTHLDHKSV 295

Query: 307 GDWMMEIYDQTHPSITQKD 325
            D     Y   HP + +K+
Sbjct: 296 IDH----YKNFHPQVIKKN 310


>gi|227893507|ref|ZP_04011312.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047]
 gi|227864677|gb|EEJ72098.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047]
          Length = 302

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 81/309 (26%), Positives = 145/309 (46%), Gaps = 14/309 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            E ++++  L+ ER  S  T+ SY  D  +   F     +E        +++  +++ ++
Sbjct: 6   DELEHFISYLQNERHYSSKTVLSYRTDLLEAKKFW----QENGGFNGWIKVNERDVQVYL 61

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                +K+   S +R +S + SF ++L +R+I        +   +    LP    + +  
Sbjct: 62  QHLADRKLARSSQQRQMSSLHSFYRFLTRRRIIKIDPTQAITLRRGEKKLPEFFYQPEIK 121

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            + D++        K +  RN A+  L Y  G+R+SE   LT + I     T+ + GKG+
Sbjct: 122 QVFDSL-----QGNKPLTVRNLALFELFYATGMRVSEVSGLTLKQIDLSLQTILVHGKGN 176

Query: 196 KIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K R V      +K+++ Y  +  P  L    +  +F    GKP++    Q  +++     
Sbjct: 177 KDRYVAFDDRTKKSLVNYLENARPKLLKDETEQHVFLSNLGKPISDRGIQYVMQKTFNQA 236

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+      H LRH+FAT +L+NG DLRS+Q +LGH  LS TQIYT+V   +    +   Y
Sbjct: 237 GISGKVHPHELRHTFATAMLNNGADLRSVQELLGHSDLSATQIYTHVTMAH----LKSDY 292

Query: 315 DQTHPSITQ 323
           ++  P   +
Sbjct: 293 EKYFPRNKE 301


>gi|258541884|ref|YP_003187317.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-01]
 gi|256632962|dbj|BAH98937.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-01]
 gi|256636019|dbj|BAI01988.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-03]
 gi|256639074|dbj|BAI05036.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-07]
 gi|256642128|dbj|BAI08083.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-22]
 gi|256645183|dbj|BAI11131.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-26]
 gi|256648238|dbj|BAI14179.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-32]
 gi|256651291|dbj|BAI17225.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654282|dbj|BAI20209.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-12]
          Length = 306

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 93/306 (30%), Positives = 151/306 (49%), Gaps = 20/306 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L  ER  +  TL +YE D       LA         QT++  +   ++ +++    
Sbjct: 9   FLEMLAAERAAAPNTLAAYEADLTSCAESLAREG------QTLQTATTEGLQNWMAALVG 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                R++ R LS I+ F  +L +  +  ++   ++ + K    LPR L+E + L L++ 
Sbjct: 63  SGQARRTVARRLSCIRQFYLFLLREGMRADNPAAHLDSPKPHTPLPRFLSESEVLALLNA 122

Query: 141 VL--LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                  S   K       A L LLY  GLRISE L+L  + I  DQ  + ++GKG + R
Sbjct: 123 CAEPAGASLAKKRRGILAKAALELLYASGLRISELLALPRKAIAGDQRMIMVRGKGGRER 182

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRG-KPLNPGVFQRYIRQLRRYLGL 256
           +VPL  S R+A          +++ +++ P LF G    KP+    F R +  +     +
Sbjct: 183 LVPLSDSAREA-----AQALLEVDAHLESPFLFPGRDPAKPMTRQAFDRILHTVAIRAEI 237

Query: 257 -PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            P   + H LRHSFATHLL++G DLR++Q +LGH  ++TTQIYT+V ++     + +   
Sbjct: 238 DPARLSPHVLRHSFATHLLAHGADLRALQMLLGHADIATTQIYTHVQTER----LQKAVQ 293

Query: 316 QTHPSI 321
             HP  
Sbjct: 294 AHHPLA 299


>gi|189219127|ref|YP_001939768.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4]
 gi|189185985|gb|ACD83170.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4]
          Length = 315

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 89/315 (28%), Positives = 151/315 (47%), Gaps = 16/315 (5%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P+       K  +  L  L IER  +  T   Y     +FL ++  +        +I  +
Sbjct: 3   PQPSEQSWQKTIEKALAFLAIERSHAINTQLLYRQILEKFLDWVLSHK------LSIGSV 56

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
             + I  F+ + R + + D S+K ++  ++   +YLK++     + + +       + LP
Sbjct: 57  RSSHIELFLDEERKRGLSDSSIKITIIALRHLFEYLKEQNKIKTNPLDHKELPSIQSRLP 116

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L  K+   L+             +  R+ AIL LLY  GLR+SE +SL  ++   +  
Sbjct: 117 QFLTTKEIEKLL-----QAPFPDTPLGWRDKAILELLYSSGLRVSELISLKLESYYPEHF 171

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            +++ GKG+K R VP+    ++A+ +Y        L    +  +F   RG+PL     ++
Sbjct: 172 QIKVLGKGNKERAVPIGKCAKEALDKYIAEGRTKLLAKKTRGEVFLNQRGQPLTRSRIRQ 231

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            I    R  G+      H LRH+FA+HL+ NG DLR IQ +LGH  ++TTQIYT+VN K+
Sbjct: 232 LIIHYARLGGIDKKVYPHLLRHTFASHLVENGADLRVIQELLGHANIATTQIYTHVNLKH 291

Query: 306 GGDWMMEIYDQTHPS 320
               + EI+ + HP 
Sbjct: 292 ----LKEIHRRCHPR 302


>gi|329114345|ref|ZP_08243107.1| Tyrosine recombinase XerD [Acetobacter pomorum DM001]
 gi|326696421|gb|EGE48100.1| Tyrosine recombinase XerD [Acetobacter pomorum DM001]
          Length = 306

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 146/305 (47%), Gaps = 18/305 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L  ER  +  TL +YE D       LA         QT++  +   ++ +++    
Sbjct: 9   FLEMLAAERAAAPNTLAAYEADLTSCAESLAREG------QTLQTATTEGLQNWMAALVG 62

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                R++ R LS I+ F  +L +  +  ++   ++ + K    LPR L+E + L L++ 
Sbjct: 63  SGQARRTVARRLSCIRQFYLFLLREGMRADNPAAHLDSPKPRTPLPRFLSESEVLALLNA 122

Query: 141 VLL--HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                  S   K       A L LLY  GLRISE L+L  + I  DQ  + ++GKG + R
Sbjct: 123 CAEPDGASLPKKRRGILAKAALELLYASGLRISELLALPRKAIAGDQRMIMVRGKGGRER 182

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGL- 256
           +VPL  S R+A     ++            LF G    KP+    F R +  +     + 
Sbjct: 183 LVPLSDSAREAAQALLEVDAHL----ESAFLFPGRDPAKPMTRQAFDRILHTVAIRAEID 238

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           P   + H LRHSFATHLL++G DLR++Q +LGH  ++TTQIYT+V ++     + +    
Sbjct: 239 PARLSPHVLRHSFATHLLAHGADLRALQMLLGHADIATTQIYTHVQTER----LQKAVQA 294

Query: 317 THPSI 321
            HP  
Sbjct: 295 HHPLA 299


>gi|146299694|ref|YP_001194285.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146154112|gb|ABQ04966.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 297

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 145/304 (47%), Gaps = 12/304 (3%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +   L+ E+  S  T+ +Y  D      F   + +E+    +I +++Y++IR++I   
Sbjct: 6   QAFQDYLQFEKKYSPHTVNAYLNDL----GFFEEFNKERFEQDSIERVNYSQIRSWIVFL 61

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q + + S+ R ++ +K+F K+L K K    S +L  + LK    +    +EK+   L+
Sbjct: 62  VDQGVSNVSVNRKMASLKAFYKFLLKIKQIEVSPMLKHKALKTPKIVQIPFSEKEVSDLM 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                       + + R+  I+ L Y  G+R +E + L  +N+      +++ GK  K R
Sbjct: 122 ----FGVESPIGFEEVRDKLIVDLFYTTGMRRAELIGLMLKNVDLSSGVVKVLGKRSKER 177

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVPLLP V   I  Y         +      F   +G  L+     R I      +   +
Sbjct: 178 IVPLLPIVADQINLYIKEREQLDQIVDSEYFFISKKGLKLSESFVYRLINCYFSRVSEKV 237

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FATHLL+NG DL S++ +LGH  L++TQ+YT+    N    + ++Y + H
Sbjct: 238 KKSPHVLRHTFATHLLNNGADLNSVKELLGHSSLASTQVYTH----NSLAELKKVYSEAH 293

Query: 319 PSIT 322
           P   
Sbjct: 294 PRNK 297


>gi|302345052|ref|YP_003813405.1| putative tyrosine recombinase XerC [Prevotella melaninogenica ATCC
           25845]
 gi|302149339|gb|ADK95601.1| putative tyrosine recombinase XerC [Prevotella melaninogenica ATCC
           25845]
          Length = 294

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 68/304 (22%), Positives = 142/304 (46%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  ++ ER  S +T+ +Y  D  +F  F      +     +   +    +R ++  
Sbjct: 4   VEKFLDYIKFERNYSPMTVINYRKDLTEFERFYKELEPQ----LSWESIDSDIVRNWMEY 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S+ R LS ++SF ++  +RK+  +  +  ++  K+  +LP+ L E +   L
Sbjct: 60  MMDRGNSASSVNRRLSALRSFYRFALRRKLIEKDPVHGLQGPKRQKTLPQFLKESEMERL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D+ +        + D     I+   Y  G+R+SE + L  ++I +    +++ GK +K 
Sbjct: 120 LDSKM----WTDSYKDVLERTIIITFYVTGIRLSELIGLDDKDIDNVTCEIKVTGKRNKQ 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RIVP    +     +Y ++    +  + +   F+  +GK +     +  +++    +   
Sbjct: 176 RIVPFGKELADVFAQYQEVRNATVKGDSK-AFFQTEKGKRMTTAQVRTLVKKNLSKVSTL 234

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FAT +L++   L S++ +LGH  LSTT+IYT+   +     + ++Y   
Sbjct: 235 KKRSPHVLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQ----LKKVYKNA 290

Query: 318 HPSI 321
           HP  
Sbjct: 291 HPRA 294


>gi|327441062|dbj|BAK17427.1| site-specific recombinase XerD [Solibacillus silvestris StLB046]
          Length = 299

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 86/313 (27%), Positives = 150/313 (47%), Gaps = 15/313 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +   L  +   +++ +++E+  S  T++ Y  D  +F  FL         IQ I ++ Y 
Sbjct: 1   MDENLQSQLDQFIRYVQLEKNFSLHTVREYTSDLEEFFAFL-----HAEGIQKIAEVEYI 55

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
             R +++K   ++    S+ R +S I+SF ++L + +   ++   ++ + KK   LP   
Sbjct: 56  HARLYVTKLYDEQKARTSISRKISSIRSFFRFLNREQNIDDAPFRSLYHPKKEERLPSFF 115

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
                       L   +     I  RN A+L LLY  G+R+SE +SL   +I    + +R
Sbjct: 116 Y-----EEELKELFEKNEGDDPIQIRNMALLELLYATGMRVSECVSLELTDIDFHYNIVR 170

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           + GKG K RI+P       A++ Y   + P  +       +F  +RG  L     +  + 
Sbjct: 171 VMGKGRKERIIPFGQYAHDALIRYIKQVRPTLMKKENHQKVFVNMRGGELTTRGVRYILS 230

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           ++     +      H LRH+FATHLL+NG D+R++Q +LGH  LS+TQIYT+V  +    
Sbjct: 231 EMIDNASMHTKIYPHMLRHTFATHLLNNGADMRTVQELLGHANLSSTQIYTHVTKE---- 286

Query: 309 WMMEIYDQTHPSI 321
            + + Y  +HP  
Sbjct: 287 ALRKTYMNSHPRA 299


>gi|304321470|ref|YP_003855113.1| putative integrase/recombinase DNA recombination protein
           [Parvularcula bermudensis HTCC2503]
 gi|303300372|gb|ADM09971.1| putative integrase/recombinase DNA recombination protein
           [Parvularcula bermudensis HTCC2503]
          Length = 323

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 79/301 (26%), Positives = 135/301 (44%), Gaps = 15/301 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  + +ERG S  TL++Y  D  +  +FL           ++ + +  ++ A+I     
Sbjct: 15  FLDMMAVERGASPRTLRNYGRDLERVSVFLFQRG------TSLLRATAADLSAYIDHLHG 68

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     +    LS ++ F  +     +  ++    +   K    LP+ L+  +A +L+D 
Sbjct: 69  QGRSAATAALCLSALRQFYLFAYTEGMREDNPAELVDRPKARRPLPKILSIDEAASLLDL 128

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                +   K    R  A+L +LY  GLR+SE  SL    +   +  + + GKG K R+V
Sbjct: 129 ARDEAAC-MKPGPLRLHALLEVLYATGLRVSELCSLPRGAVRAGEPWMTVLGKGQKERLV 187

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLGL-PL 258
           PL      A+  Y  +            LF    +   +      + +++L    G+ P 
Sbjct: 188 PLTDGAVMAVSHY--VAVQTDAERASAFLFPSRGKTGHITTARVAQLLKELSARAGIDPT 245

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FA+HLL  G DLR +Q +LGH  +STTQIYT++    G   + +  +  H
Sbjct: 246 RVSPHVLRHAFASHLLEGGADLRIVQQLLGHADISTTQIYTHI----GSGSLAKTLEHRH 301

Query: 319 P 319
           P
Sbjct: 302 P 302


>gi|218885871|ref|YP_002435192.1| integrase family protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756825|gb|ACL07724.1| integrase family protein [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 371

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 99/336 (29%), Positives = 152/336 (45%), Gaps = 40/336 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK-------------------ITIQ 61
           +L +L +E+G +  T+ +Y  D  QF  FL    +                     +++ 
Sbjct: 2   FLVHLGMEKGYADATVTAYGTDMDQFAAFLEDEGDGPAIPGRPSLLNLNPAPSPAPLSLD 61

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           T   ++   ++ F+++   Q+I   S+ R LS +++F ++L + +  T      + N K+
Sbjct: 62  TPEHITKRHVQRFLAELHRQRIAKSSVARKLSALRAFFRFLLRLRRVTADPTAGVHNPKQ 121

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL-----------------LY 164
               P ALN  QA  L+D      +  T    A                         LY
Sbjct: 122 DQRHPHALNVDQAFALLDERRQRKALATAHATAHAGHGTDFGPTDAALLARDLALAELLY 181

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
           G GLR+SEAL L   +       +R+ GKG + R+ PL  + R A+  +  +        
Sbjct: 182 GSGLRVSEALELNVLDADPASGVVRVMGKGGRERMSPLSDTARDALSAWLAVRHQVDEGR 241

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
            +  LF G RG  LN     R I  L    GLP + + H LRHSFATHLL  G DLRS+Q
Sbjct: 242 GEPALFLGARGGRLNRRQAARIIETLCLRAGLPQAISPHGLRHSFATHLLEAGADLRSVQ 301

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
            +LGH RLSTTQ YT++        ++++YD+ HP 
Sbjct: 302 ELLGHARLSTTQRYTHLT----LSRLVDVYDRAHPR 333


>gi|330836616|ref|YP_004411257.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374]
 gi|329748519|gb|AEC01875.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374]
          Length = 309

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 88/321 (27%), Positives = 153/321 (47%), Gaps = 18/321 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + S  + +  + + ++L +ER LS  T+  Y    R+++ FL              +   
Sbjct: 1   MPSSAISQLLEEYREHLLLERRLSPATVNVYVPVVREYVSFLETRGIGA------EEAQA 54

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             I  +   +    +G R+L R++S ++SF ++L    I  ++    + + K   +LPR 
Sbjct: 55  DTISGYFIHKGQAGLGTRTLARNMSALRSFHRFLLLNDIRNDNPFELLDSPKLPRTLPRT 114

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++      ++  + L    +      R+ AI  ++Y CGLR+SE  SL  ++   +   L
Sbjct: 115 MDYDSVDDILHEMEL----DDAIYARRDRAIFEVIYSCGLRVSELASLRIEDYSPESRLL 170

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           RI GK +K RIVP+     + I EY       F         LF    G+ L+  +  + 
Sbjct: 171 RITGKRNKQRIVPVGDVAAELIDEYIISVRPAFIPKGRSSRFLFLNRYGQSLSRVMIWKL 230

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
            ++    +G+      HTLRHS+ATHLL  G DLRS+Q +LGH  + TTQIYT+V++ + 
Sbjct: 231 FKKYCMRIGVEAKV--HTLRHSYATHLLKAGADLRSVQELLGHSDIRTTQIYTHVDTTD- 287

Query: 307 GDWMMEIYDQTHPSITQKDKK 327
              + E + + HP   Q + +
Sbjct: 288 ---LQEQFRRFHPDAGQSENE 305


>gi|167627355|ref|YP_001677855.1| phage integrase family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597356|gb|ABZ87354.1| phage integrase family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 293

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 84/310 (27%), Positives = 147/310 (47%), Gaps = 21/310 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ++   N+L NL   +  S+ T+ +Y  D  Q            I  + I +L   +I  +
Sbjct: 4   IEHIDNFLDNLLYLKNYSQETINNYRRDLLQL--------NSSIVDKDITKLENNDILMW 55

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + K   Q    ++L+R LS ++SF  +L   ++   +    ++  K S  LP+A+N  + 
Sbjct: 56  VKKLHAQGNSSKTLQRKLSSLRSFFNFLINSELIKNNPTTGIKAPKSSKKLPKAVNTDEL 115

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D         +  I+ R+ A   LLY CG+R+SE  S+  ++I  +Q ++R+ GKG
Sbjct: 116 AYLLDI------KPSNNIETRDIACFDLLYSCGIRLSELSSIELKDININQKSIRVIGKG 169

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +K R+V         +  + +    D        LF    G+ L     Q+ I    +  
Sbjct: 170 NKERVVYFGSKTLINLNRWLNTR--DTYSPKCNFLFISQNGEHLTNRSIQKRIEIFAQKY 227

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
                   H LRHSFATH+L +  DL +++ +LGH  +S+TQIYT++N +     +  ++
Sbjct: 228 A-TKHIHPHMLRHSFATHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQ----LASVF 282

Query: 315 DQTHPSITQK 324
           D+ HP   +K
Sbjct: 283 DKAHPRAKKK 292


>gi|150008883|ref|YP_001303626.1| tyrosine type site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|301311928|ref|ZP_07217850.1| integrase/recombinase XerC [Bacteroides sp. 20_3]
 gi|149937307|gb|ABR44004.1| tyrosine type site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|300830030|gb|EFK60678.1| integrase/recombinase XerC [Bacteroides sp. 20_3]
          Length = 302

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 72/307 (23%), Positives = 148/307 (48%), Gaps = 13/307 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             ++L  L  ER  S  T+ +Y  D  QF  ++  + E    +    ++    +R++I  
Sbjct: 3   IDDFLNYLRYERNYSNYTIGAYSKDLDQFQRYVREHRE---GVFNPGEIDSDFVRSWIVS 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +K+   S+ R LS +KSF K+L KR I + + +  +   K    LP  + + +   L
Sbjct: 60  LMDEKLSPVSVNRKLSSLKSFFKFLMKRGIVSANPLRLVSGPKTKKPLPYFIKDSELEAL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D        +  +   RN  ++ +LY  G+R SE + +   ++  +   +++ GK +K 
Sbjct: 120 LD----GDGFDEDFEGVRNRLVIEMLYDTGMRRSELIGIRNVDVDYEAMQVKVTGKRNKQ 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R++P    ++  +L Y ++   ++    +   F    G  L+ G+    +++    + + 
Sbjct: 176 RLIPFAEGLKNLMLAYTEVRDREVEAAGE-WFFVRKNGNQLSTGIVYNIVKKQLSEIPML 234

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRHSFAT +L+NG +L +++ +LGH  L++T +YT+   +     + ++Y   
Sbjct: 235 AKRSPHVLRHSFATSMLNNGAELNAVKDLLGHSSLASTSVYTHTTFEE----LKKVY-HA 289

Query: 318 HPSITQK 324
           HP   ++
Sbjct: 290 HPRAKKE 296


>gi|258622840|ref|ZP_05717857.1| tyrosine recombinase XerC [Vibrio mimicus VM573]
 gi|258584901|gb|EEW09633.1| tyrosine recombinase XerC [Vibrio mimicus VM573]
          Length = 266

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 70/271 (25%), Positives = 137/271 (50%), Gaps = 11/271 (4%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           ++ + +  QL    +R  +   + Q +   S+   LS ++SFL +L  R     +    +
Sbjct: 7   QMGLTSWPQLDAAWVRQLVVLGKRQGMKASSISTRLSSLRSFLDFLILRGELQANPAKGV 66

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              +K   LP+ L+  +   L++        +   +  R+ AI+ L+YG GLR++E +S+
Sbjct: 67  SAPRKQRPLPKNLDVDEMAQLLEVT------DDDPLSIRDRAIMELMYGSGLRLAELVSI 120

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
             +++      +R+ GKG+K R V      ++ +  +  L     N + +  LF    G 
Sbjct: 121 DVKDVNLRDGEIRVIGKGNKERKVWFAGQAQEWVGNWLKLRSQLANSD-ETALFVSKLGT 179

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            ++    Q+ + +  +   +    + H LRHSFATH+L +  +LR++Q +LGH  ++TTQ
Sbjct: 180 RISHRSVQKRMAEWGQKQAVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQ 239

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
           IYT+++ ++    + ++YDQ HP   +K+K 
Sbjct: 240 IYTHLDFQH----LAQVYDQAHPRARKKNKD 266


>gi|254230112|ref|ZP_04923508.1| tyrosine recombinase XerC [Vibrio sp. Ex25]
 gi|151937357|gb|EDN56219.1| tyrosine recombinase XerC [Vibrio sp. Ex25]
          Length = 266

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 72/269 (26%), Positives = 136/269 (50%), Gaps = 11/269 (4%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           ++ ++   Q+    +R    K   + +   SL   LS ++SF  +L  R   + +    +
Sbjct: 7   EMGLKDWSQVDAGWVRQLAGKGMREGMKASSLATRLSSLRSFFDFLILRGEMSANPAKGV 66

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              +K   LP+ L+  +   L++       +E   +  R+ A++ L+YG GLR++E +S+
Sbjct: 67  SAPRKKRPLPKNLDVDEVSQLLEV------NEDDPLAVRDRAMMELMYGAGLRLAELVSV 120

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
             +++      LR+ GKGDK R VP      + + ++  +   DL    +  LF    G 
Sbjct: 121 DVRDVQLRSGELRVIGKGDKERKVPFSGMATEWVAKWLKVR-GDLAAPGEPALFVSKLGT 179

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            ++    Q+ + +  +   +    + H LRHSFATH+L +  +LR++Q +LGH  +STTQ
Sbjct: 180 RISHRSVQKRMAEWGQKQSVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQ 239

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           IYT+++ ++    + + YDQ HP   +K+
Sbjct: 240 IYTHLDFQH----LAQAYDQAHPRARKKN 264


>gi|153002474|ref|YP_001368155.1| tyrosine recombinase XerC [Shewanella baltica OS185]
 gi|151367092|gb|ABS10092.1| tyrosine recombinase XerC [Shewanella baltica OS185]
          Length = 306

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 81/312 (25%), Positives = 146/312 (46%), Gaps = 19/312 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  Q + + L  ER LS  T+++Y  +  +    L            +  +S    +  +
Sbjct: 14  QWLQTFERYLSTERQLSAHTVRNYLYELNRGSDLL-------PDGVHLLNVSREHWQQVL 66

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           SK   + +  RSL   LS +K + ++L +  +   +    +   K++  LP+ ++     
Sbjct: 67  SKLHRKGLSPRSLSLCLSAVKQWGEFLLREGVIELNPAKGLSAPKQAKPLPKNIDVDAIS 126

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+D         T  +  R+ A++ L Y  GLR++E  +L   ++  D   +R+ GKG+
Sbjct: 127 HLLDI------EGTDPLSLRDKAMMELFYSSGLRLAELAALNLSSVQYDLKEVRVLGKGN 180

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RIVP+      A+  + +        +    LF   +GK L+    Q  + +  +   
Sbjct: 181 KERIVPVGRLAIAALQNWLNCRKQIPCEDN--ALFVTEKGKRLSHRSIQARMAKWGQEQA 238

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L +    H LRHSFATH+L    DLR++Q +LGH  L+TTQIYT+++ ++    + ++YD
Sbjct: 239 LSVRVHPHKLRHSFATHMLEASADLRAVQELLGHANLATTQIYTSLDFQH----LAKVYD 294

Query: 316 QTHPSITQKDKK 327
             HP   +   K
Sbjct: 295 NAHPRAKKTQDK 306


>gi|312963818|ref|ZP_07778289.1| Tyrosine recombinase [Pseudomonas fluorescens WH6]
 gi|311281853|gb|EFQ60463.1| Tyrosine recombinase [Pseudomonas fluorescens WH6]
          Length = 299

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 87/310 (28%), Positives = 148/310 (47%), Gaps = 17/310 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++   +  +L  ER +S  TL++Y  D  + L +      EK  + + + L    +R+
Sbjct: 1   MERQLDAYCAHLRNERQVSPHTLEAYRRDLNKVLAYC-----EKQQVSSWKSLDIQALRS 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            I++   Q    RSL R LS ++    YL +  +        +   K    LP+ L+  +
Sbjct: 56  LIARLHQQGQSSRSLSRLLSAVRGLYHYLNREGLCDHDPANGLSPPKGERRLPKTLDTDR 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           AL L+D      + E  ++  R+ AIL L Y  GLR+SE   L    +      +++ GK
Sbjct: 116 ALQLLDG-----AVEDDFLAHRDQAILELFYSSGLRLSELTGLNLDQLDLADGLVQVLGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R++P+    R+A+  +  L    L       +F   +G+ L P   Q  ++     
Sbjct: 171 GSKTRVLPVGRKAREALQLWLPLR--ALANPQDDAVFISQQGRRLGPRAIQVRVKAAGER 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L  +   H LRHSFA+HLL +  DLR++Q +LGH  + TTQIYT+++ ++    +  +
Sbjct: 229 -ELGQNLHPHMLRHSFASHLLESSQDLRAVQELLGHSDIKTTQIYTHLDFQH----LATV 283

Query: 314 YDQTHPSITQ 323
           YD  HP   +
Sbjct: 284 YDSAHPRAKR 293


>gi|254511455|ref|ZP_05123522.1| tyrosine recombinase XerD [Rhodobacteraceae bacterium KLH11]
 gi|221535166|gb|EEE38154.1| tyrosine recombinase XerD [Rhodobacteraceae bacterium KLH11]
          Length = 318

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 83/310 (26%), Positives = 140/310 (45%), Gaps = 20/310 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+    E G +  TL +Y  D + F  +L              +    +I  ++     
Sbjct: 14  FLEAQAAELGAANNTLLAYGRDLKDFADWLMRRK------SGFAEADRDQIEGYLIDCDA 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q +   +  R LS IK   ++  +      +  + ++   ++  LP+ L+  +   L++ 
Sbjct: 68  QGLSRATRARRLSAIKQLYRFAFEEGWREANPAIQIKGPGRAKRLPKTLDVPEVDRLLEA 127

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                +  +     RN+ ++ LLY  G+R++E +SL   +   D   L + GKG K R+V
Sbjct: 128 --ARRTGRSAADRIRNTCLMELLYATGMRVTELVSLPVSSARGDPRMLLVLGKGGKERMV 185

Query: 201 PLLPSVRKAILEYYDLCPFD------LNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRY 253
           PL P  R A+ E+                     LF    +   L    F   +++L   
Sbjct: 186 PLSPPARDALAEWLKQRDDAEERTVAKGGQASRFLFPSRGKSGYLTRHRFFLLVKELAVE 245

Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+ P   T HTLRH+FATHLL+NG DLRSIQ++LGH  ++TT+IYT+V  +     + E
Sbjct: 246 GGVSPAKVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLDER----LAE 301

Query: 313 IYDQTHPSIT 322
           +  + HP   
Sbjct: 302 LVLEHHPLAK 311


>gi|319937347|ref|ZP_08011754.1| site-specific tyrosine recombinase xerD [Coprobacillus sp. 29_1]
 gi|319807713|gb|EFW04306.1| site-specific tyrosine recombinase xerD [Coprobacillus sp. 29_1]
          Length = 301

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 153/309 (49%), Gaps = 15/309 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
              + + Q + +E+G S+ T+++YE D   F+ F+     +K  +  +  +    +  ++
Sbjct: 5   DALKEYKQYMIVEKGYSRYTVENYERDILHFINFI----HKKYEVDNVNNVIKDHMYHYL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                  +   S+ R ++ +K F  +L K  I  ++ + +    KK+  LP  L   +  
Sbjct: 61  KDLHNH-LKASSVDRHMTSLKQFYIFLVKENIIKDNIMSSFEMSKKAKYLPEVLTVGEVN 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+D++ +        + ARN  ++ +LY  GLR+SE   LT QN+   +  ++  GK +
Sbjct: 120 QLLDSIAVGDP-----VSARNRCMVEVLYASGLRVSEMCFLTLQNVNIHKGFVKCIGKRN 174

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K RIVP+  +    + EY +     L   +    LF   RG+P+    F   +  + +  
Sbjct: 175 KERIVPMNENCCLLLKEYIEEYRPQLCEEVSSQYLFINKRGQPIQRDDFYHILENIVKKS 234

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           GL    T HTLRH+FATHLL N  DLRSIQ +LGH  +STT IYT+V++       +E Y
Sbjct: 235 GLKKHVTPHTLRHTFATHLLENDADLRSIQEMLGHSDISTTTIYTHVSNNKA----IEEY 290

Query: 315 DQTHPSITQ 323
            + HP   +
Sbjct: 291 RKLHPRSKK 299


>gi|304412533|ref|ZP_07394139.1| tyrosine recombinase XerC [Shewanella baltica OS183]
 gi|307307192|ref|ZP_07586930.1| tyrosine recombinase XerC [Shewanella baltica BA175]
 gi|304349175|gb|EFM13587.1| tyrosine recombinase XerC [Shewanella baltica OS183]
 gi|306910431|gb|EFN40862.1| tyrosine recombinase XerC [Shewanella baltica BA175]
          Length = 306

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 81/312 (25%), Positives = 147/312 (47%), Gaps = 19/312 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  Q + + L  ER LS  T+++Y  +  +    L            +  +S    +  +
Sbjct: 14  QWLQTFERYLSTERQLSAHTVRNYLYELNRGSDLLPEGV-------HLLNVSREHWQQVL 66

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +K   + +  RSL   LS +K + ++L +  +   +    +   K++  LP+ ++     
Sbjct: 67  AKLHRKGLSPRSLSLCLSAVKQWGEFLLREGVIELNPAKGLSAPKQAKPLPKNIDVDAIS 126

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+D         T  +  R+ A++ L Y  GLR++E  +L   ++  D   +R+ GKG+
Sbjct: 127 HLLDI------EGTDPLSLRDKAMMELFYSSGLRLAELAALNLSSVQYDLKEVRVLGKGN 180

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RIVP+      A+L + +        +    LF   +GK L+    Q  + +  +   
Sbjct: 181 KERIVPVGRLAIAALLNWLNCRKQIPCEDN--ALFVTEKGKRLSHRSIQARMAKWGQEQA 238

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L +    H LRHSFATH+L    DLR++Q +LGH  L+TTQIYT+++ ++    + ++YD
Sbjct: 239 LSVRVHPHKLRHSFATHMLEASADLRAVQELLGHANLATTQIYTSLDFQH----LAKVYD 294

Query: 316 QTHPSITQKDKK 327
             HP   +   K
Sbjct: 295 NAHPRAKKTQDK 306


>gi|217975041|ref|YP_002359792.1| tyrosine recombinase XerC [Shewanella baltica OS223]
 gi|217500176|gb|ACK48369.1| tyrosine recombinase XerC [Shewanella baltica OS223]
          Length = 306

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 82/312 (26%), Positives = 147/312 (47%), Gaps = 19/312 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  Q + + L  ER LS  T+++Y  +  +    L            +  +S    +  +
Sbjct: 14  QWLQTFERYLSTERQLSAHTVRNYLYELNRGSDLLPEGV-------HLLNVSREHWQQVL 66

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           SK   + +  RSL   LS +K + ++L +  +   +    +   K++  LP+ ++     
Sbjct: 67  SKLHRKGLSPRSLSLCLSAVKQWGEFLLREGVIELNPAKGLSAPKQAKPLPKNIDVDAIS 126

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+D         T  +  R+ A++ L Y  GLR++E  +L   ++  D   +R+ GKG+
Sbjct: 127 HLLDI------EGTDPLSLRDKAMMELFYSSGLRLAELAALNLSSVQYDLKEVRVLGKGN 180

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RIVP+      A+L + +        +    LF   +GK L+    Q  + +  +   
Sbjct: 181 KERIVPVGRLAIAALLNWLNCRKQIPCEDN--ALFVTEKGKRLSHRSIQARMAKWGQEQA 238

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L +    H LRHSFATH+L    DLR++Q +LGH  L+TTQIYT+++ ++    + ++YD
Sbjct: 239 LSVRVHPHKLRHSFATHMLEASADLRAVQELLGHANLATTQIYTSLDFQH----LAKVYD 294

Query: 316 QTHPSITQKDKK 327
             HP   +   K
Sbjct: 295 NAHPRAKKTQDK 306


>gi|17544771|ref|NP_518173.1| site-specific tyrosine recombinase XerC [Ralstonia solanacearum
           GMI1000]
 gi|34222938|sp|Q8Y3C8|XERC1_RALSO RecName: Full=Tyrosine recombinase xerC 1
 gi|17427060|emb|CAD13580.1| probable tyrosine recombinase xerc 1 protein [Ralstonia
           solanacearum GMI1000]
          Length = 329

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 89/321 (27%), Positives = 151/321 (47%), Gaps = 29/321 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L+ ER LS+ TL SY  +       L            + +L    IR  +++  
Sbjct: 22  AYLDALKFERKLSQHTLASYAREL----AVLQQLGARFAAGIDLMRLQPHHIRRMMAQLH 77

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNILNMRNLKKSNSLPRALNEKQALTLV 138
              +  RS+ R+LS  + + ++L  R    T + +  +R  K    LP+AL+ +QA+ L+
Sbjct: 78  GGGLSGRSIARALSAWRGWYQWLALRDAAVTANPVDGIRAPKSPKRLPKALSVEQAVALM 137

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-----------MDDQST 187
           + +             R+ A+  L Y CGLR+SE + L  ++              +   
Sbjct: 138 EQL-----PGDDPEAVRDRAVNELFYSCGLRLSELVGLDLRHAQAGDYASASWLDLEARE 192

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLC----PFDLNLNIQLPLFRGIRGKPLNPGVF 243
           + + GKG+K R VP+     +A+  +  +       D        LF   RGK L     
Sbjct: 193 VTVLGKGNKRRTVPVGSKAAEALAAWLAVRPQLAQPDAAPEDAHALFLSARGKRLAQRQI 252

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           Q  +++     G+P     H LRHSFATH+L + GDLR++Q +LGH  +++TQ+YT+++ 
Sbjct: 253 QTRMKRNAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDF 312

Query: 304 KNGGDWMMEIYDQTHPSITQK 324
           ++    + +IYDQ HP   +K
Sbjct: 313 QH----LAKIYDQAHPRAKKK 329


>gi|323341690|ref|ZP_08081923.1| tyrosine recombinase XerC [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464115|gb|EFY09308.1| tyrosine recombinase XerC [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 296

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 91/299 (30%), Positives = 151/299 (50%), Gaps = 19/299 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++++++ I    S+ T  +YE D RQFL F        I  Q + ++       +++   
Sbjct: 9   DFMRHIAITNTSSEHTNVAYERDIRQFLDF--------IEGQAVHEVDRLMAYDYLNMLY 60

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +   S+ R +S ++SF K+L+     T++    ++  ++   LP  L   +  TL+ 
Sbjct: 61  DSNLSSSSVARKISTLRSFYKFLQINYGLTDNPFQQIKIKRQGRHLPHFLMYDEIETLL- 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                 S +   +  RN  ++ L+Y CGLR+SE + L   ++   + +LR+ GKG+K R 
Sbjct: 120 -----LSCDESVLGVRNQVMIELMYACGLRVSEVVDLQIHDLDLTERSLRVIGKGNKERQ 174

Query: 200 VPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +    S+   +  Y +L  P   N++    +F   RGKPL P   Q  +    +  GL +
Sbjct: 175 LFFYESLVPKLWSYLNLYRPQFPNVSDTEAVFLNQRGKPLTPRGIQHILEHQGKTAGLRM 234

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
               H LRHSFATHLL NG  LR +Q++LGH  LSTTQIYT+V+ +     + E+YD  
Sbjct: 235 KLHPHMLRHSFATHLLDNGASLRVVQTLLGHESLSTTQIYTHVSMQ----KIKEVYDDA 289


>gi|283768283|ref|ZP_06341195.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa
           W1219]
 gi|283104675|gb|EFC06047.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa
           W1219]
          Length = 297

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 100/312 (32%), Positives = 155/312 (49%), Gaps = 17/312 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +  K  +++L  + + R  S  T ++Y  D   F+ +L     EK  I T +++    + 
Sbjct: 2   DYKKSLKSFLDYIRLARTGSLHTEKAYRRDVENFIAYL-----EKKKIHTWKRVDKNFLL 56

Query: 73  AFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
            + +  R +  + + S  R LS ++SF +YL   +    + + + +N+K S  LP  L  
Sbjct: 57  EYFTTLRQKNHLSNSSYDRHLSSLRSFFRYLNVVEGIGHNPMSSFKNVKTSRPLPEYLTV 116

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            Q   L+D+  L           RN  I+ LLY CGLRISE  ++  Q+I      +R+ 
Sbjct: 117 DQVQDLLDSFDLE-----DKKGLRNRCIVELLYACGLRISECANIKIQDIHFRDYYVRVM 171

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GK  K RIVP    +   + +Y     +     +  P F+G +GK ++    Q  + +  
Sbjct: 172 GKESKERIVPFYKELGDLLTKYL--KKYGSFSQLSDPFFKGSKGKAISVRSIQLLLEKKG 229

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R L LP     H LRHSFATHLL NG DLR +QS+LGH  LSTTQIYT+V+     D + 
Sbjct: 230 RELKLPFQLHPHVLRHSFATHLLDNGADLRIVQSLLGHENLSTTQIYTHVSQ----DTLR 285

Query: 312 EIYDQTHPSITQ 323
            +  +THP   +
Sbjct: 286 RVIAETHPLSHK 297


>gi|187250579|ref|YP_001875061.1| integrase family protein [Elusimicrobium minutum Pei191]
 gi|186970739|gb|ACC97724.1| Integrase family protein [Elusimicrobium minutum Pei191]
          Length = 295

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 89/295 (30%), Positives = 148/295 (50%), Gaps = 17/295 (5%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +  S+ TL++Y  D +    ++A +      +      ++T++R ++           ++
Sbjct: 18  KNFSRHTLRAYTADLKDVENYMAEH-----NLTAAEFFTHTKLRGYLGVTSEGDYKKNTV 72

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R +S ++SF KYL K ++   +    +   K+   LP+ L +++   L+D     T+  
Sbjct: 73  LRKISVMRSFAKYLLKHEVIKNNPFKLLPLPKREKLLPKFLTQEETDRLID-----TAAN 127

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
              + AR+ A+  L+Y  GLR SE   L+ ++I  +   +R+ GKG K R+VP+     +
Sbjct: 128 QGKLPARDKALFELIYSSGLRRSEVTGLSIKDIDLNLGVVRVMGKGSKERLVPITDLAIE 187

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           A+ EY          N   PLF    G  L        ++ +     L    TAH+LRHS
Sbjct: 188 ALKEYLSTRGV---YNSGDPLFLNRLGGRLTGDGLAYLVKNITIKANLARKVTAHSLRHS 244

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
           FATH+L+NG DLRS+Q +LGH  LS TQ+YT+V+     D + +IY QTHP   +
Sbjct: 245 FATHMLNNGCDLRSLQEMLGHKSLSATQVYTHVS----LDRLKKIYGQTHPRSKE 295


>gi|148284235|ref|YP_001248325.1| site-specific tyrosine recombinase XerD [Orientia tsutsugamushi
           str. Boryong]
 gi|146739674|emb|CAM79467.1| site-specific recombinase [Orientia tsutsugamushi str. Boryong]
          Length = 309

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 87/321 (27%), Positives = 156/321 (48%), Gaps = 24/321 (7%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +   + +L+ +  E+ +S  +L +Y+ D + F  FL     + I +Q+   ++  +I +F
Sbjct: 1   MDFLEQFLETVLAEKNVSANSLLAYKRDLQDFSDFL-----KSIQLQSSLAVTTKDIDSF 55

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I    ++ +  RS+ R +S ++ +  +L    +     + N+   + S  LP+ L+ K+ 
Sbjct: 56  IQHLLSKNLSFRSIARKISTLRQYYLFLLTENVVQPDLVTNIEVPRYSTKLPKILSIKEI 115

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--- 191
             L+D     T+ E      R  A++ LLY  GLR+SE +S+   ++  D +T +I+   
Sbjct: 116 KMLIDYCFKDTTAE----GIRTLAMICLLYSTGLRVSELVSVKITDLKFDHNTGKIKNHF 171

Query: 192 ---GKGDKIRIVPLLPSVRKAILEYYDLCPFD---LNLNIQLPLFRGI-RGKPLNPGVFQ 244
              GKG+K R+V +       I  Y     F     N    + LF    +   +    F 
Sbjct: 172 VILGKGNKERLVIMNDLTGDVISRYLPYRDFFSPFKNAKNSVYLFPSKAKQGYMTRQNFA 231

Query: 245 RYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             ++      GL P + + H LRHSFA+HLL  G DL+ IQ +LGH  +S+TQIYT+V  
Sbjct: 232 ILLKNAAINAGLSPDNVSPHILRHSFASHLLEGGADLKVIQELLGHVDISSTQIYTHVQP 291

Query: 304 KNGGDWMMEIYDQTHPSITQK 324
           +     +  + ++ HP+  +K
Sbjct: 292 ER----LKHVIEKYHPASLKK 308


>gi|308125862|ref|ZP_07663544.1| tyrosine recombinase XerC [Vibrio parahaemolyticus K5030]
 gi|308111049|gb|EFO48589.1| tyrosine recombinase XerC [Vibrio parahaemolyticus K5030]
          Length = 266

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 72/269 (26%), Positives = 136/269 (50%), Gaps = 11/269 (4%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           ++ ++   Q+    +R    K   + +   SL   LS ++SF  +L  R   + +    +
Sbjct: 7   EMGLKDWSQVDAGWVRQLAGKGMREGMKASSLATRLSSLRSFFDFLILRGEMSANPAKGV 66

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              +K   LP+ L+  +   L++       +E   +  R+ A++ L+YG GLR++E +S+
Sbjct: 67  SAPRKKRPLPKNLDVDEVNQLLEV------NEDDPLAIRDRAMMELMYGAGLRLAELVSV 120

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
             +++      LR+ GKGDK R VP      + + ++  +   DL    +  LF    G 
Sbjct: 121 DVRDVQLRSGELRVIGKGDKERKVPFSGMATEWVGKWLRVR-GDLAAPGEPALFVSKLGT 179

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            ++    Q+ + +  +   +    + H LRHSFATH+L +  +LR++Q +LGH  +STTQ
Sbjct: 180 RISHRSVQKRMAEWGQKQSVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQ 239

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           IYT+++ ++    + + YDQ HP   +K+
Sbjct: 240 IYTHLDFQH----LAQAYDQAHPRARKKN 264


>gi|316931928|ref|YP_004106910.1| tyrosine recombinase XerD [Rhodopseudomonas palustris DX-1]
 gi|315599642|gb|ADU42177.1| tyrosine recombinase XerD [Rhodopseudomonas palustris DX-1]
          Length = 327

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 137/304 (45%), Gaps = 14/304 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  +  E+G S  TL +Y  D      FL+          +I       +R +++  
Sbjct: 24  ELFLDMIAAEQGASANTLDAYRRDLADLSHFLSRRR------LSIGAADTAALRGYLADL 77

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S+ R LS ++   ++L   +I  +     +   K+  SLP+ L+      L+
Sbjct: 78  DKRGFATSSVARRLSALRHLFRFLLSERIRADDPAAILAGPKRGRSLPKVLSIADVDRLL 137

Query: 139 DNVLLHTSHET---KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
                         +   AR + +L +LY  GLR+SE ++L       D   + ++GKGD
Sbjct: 138 ACARQEADAAEGAARLRAARLNCLLEVLYATGLRVSELMALPLSAARRDARIIVVRGKGD 197

Query: 196 KIRIVPLLPSVRKAILEYYDLCP---FDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLR 251
           K R+VPL    ++A+  Y +       D        LF        L    F R ++ L 
Sbjct: 198 KERLVPLNAGAKQAMARYLEEVAAVAKDPKGASSKWLFPSFGDSGHLTRQHFARDLKDLA 257

Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              GL P   + H LRH+FA+HLL NG DLR +Q++LGH  +STTQIYT+V  +     +
Sbjct: 258 ARAGLSPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEERLKSLV 317

Query: 311 MEIY 314
            +++
Sbjct: 318 RDLH 321


>gi|296446249|ref|ZP_06888196.1| integrase family protein [Methylosinus trichosporium OB3b]
 gi|296256286|gb|EFH03366.1| integrase family protein [Methylosinus trichosporium OB3b]
          Length = 339

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 128/321 (39%), Positives = 183/321 (57%), Gaps = 8/321 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
             + E+ +  Q+WL  L  E+  S+ TL +Y  D R FL FLA +         +  L+ 
Sbjct: 26  PAAPEIARAAQDWLDYLSGEKRCSRHTLAAYARDARFFLAFLAEHKGAPANAALLGALAP 85

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++RAF+++RR Q + +RSL R L+ ++S +++L+KR +        +R  K+ ++LP+A
Sbjct: 86  ADLRAFMARRRAQGVENRSLLRGLAAVRSLMRFLEKRDLAKTDVFAAIRAPKRPHALPKA 145

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ-NIMDDQST 187
           L    A  LVD           WI AR++A L LLYG GLRISEALS+      +     
Sbjct: 146 LGVADARELVDPATRAGEAREPWIIARDAAALALLYGAGLRISEALSIDRDAAPIGKIDR 205

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           + I GKG K R+ P++  VR+AI +Y  LCP +L+     PLF G RG  L+P + Q  +
Sbjct: 206 VTIHGKGGKTRVAPIIEPVRRAIEDYIRLCPHELSGG---PLFIGARGGRLSPRILQLAM 262

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            ++R  LGLP S T H LRHSFATHLL  GGDLRSIQ +LGH  LSTTQIY  V+ +   
Sbjct: 263 ERMRGALGLPDSATPHALRHSFATHLLGRGGDLRSIQELLGHASLSTTQIYAAVDKQR-- 320

Query: 308 DWMMEIYDQTHPSITQKDKKN 328
             ++E Y   HP   + + + 
Sbjct: 321 --LLEAYRSAHPRAGRGESRE 339


>gi|170740412|ref|YP_001769067.1| tyrosine recombinase XerD [Methylobacterium sp. 4-46]
 gi|168194686|gb|ACA16633.1| tyrosine recombinase XerD [Methylobacterium sp. 4-46]
          Length = 309

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 84/312 (26%), Positives = 135/312 (43%), Gaps = 21/312 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L  L  ERG S  TL +Y  D   +L  LA    +  +      ++   +RA+++  
Sbjct: 13  QPYLDMLAAERGASANTLAAYRRDLDDYLAHLAAEGLDPAS------VAPAGVRAYVADL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   S  R LS I+ F ++L             +   K+  +LP+ L+  +  TL+
Sbjct: 67  AARGLKPSSAARRLSCIRGFHRFLYAEGHAPSDPTAPVSGPKRGRALPKVLSVAEVDTLL 126

Query: 139 ----DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
               + V    +        R   +L LLY  GLR+SE +SL     +  +  L ++GKG
Sbjct: 127 AVAKEAVARAPNPGEAARAQRLLCLLELLYATGLRVSELVSLPRAAALTKERFLVVRGKG 186

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRRY 253
            + R+VPL       I                  LF        L    F R ++ +   
Sbjct: 187 GRERLVPLTD-----IARAAMAAHLAHLAVPGPWLFPADSESGHLTRQAFARDLKAVAGA 241

Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FA+HLL NG DLR +Q +LGH  +STTQIYT++  +     +  
Sbjct: 242 AGIRADRISPHVLRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHILDER----LKS 297

Query: 313 IYDQTHPSITQK 324
           +    HP   ++
Sbjct: 298 MVRDLHPLADER 309


>gi|293400627|ref|ZP_06644772.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305653|gb|EFE46897.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 303

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 85/313 (27%), Positives = 153/313 (48%), Gaps = 16/313 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ++    +++L  +++    S  T+ SY  D +++L FL  +         I  ++Y +++
Sbjct: 2   QITDAFEDYLHYIQVVENKSLATVASYRNDLKEYLAFLDAH-----GFTAIEDVTYMDLQ 56

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F+ +++ +K    S+   ++ ++ F +YL           L++ + K +  LP   N  
Sbjct: 57  DFLKEQKVKK-KTSSVNHMITSLRMFHRYLTMTYPKIPDATLHICSSKTAKKLPTYFNVA 115

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+D+       +   +D  + A+L +LYGCGLR+SE   L       +Q  L++ G
Sbjct: 116 DIERLLDSF------QDSDMDIFHKALLEVLYGCGLRVSELTHLRLNMTHLEQGFLKVLG 169

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG+K R+VP+      A+ +Y +             +F   RG+ ++       I+    
Sbjct: 170 KGEKERMVPMHQRSVHALQQYLEFVRPQWVKQRSPFVFLNSRGQNISRQYVHNLIKSKLT 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            LGL    +AH+ RHSFATHLL  G DLR +Q +LGH  ++TTQIYT++ +K     + +
Sbjct: 230 ALGLDERLSAHSFRHSFATHLLDGGADLRVVQELLGHADIATTQIYTHIQNKR----LQD 285

Query: 313 IYDQTHPSITQKD 325
            Y   HP   ++D
Sbjct: 286 AYASFHPRSKEED 298


>gi|255020750|ref|ZP_05292809.1| Site-specific recombinase XerD [Acidithiobacillus caldus ATCC
           51756]
 gi|254969812|gb|EET27315.1| Site-specific recombinase XerD [Acidithiobacillus caldus ATCC
           51756]
          Length = 308

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 81/306 (26%), Positives = 147/306 (48%), Gaps = 16/306 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           ++   +L +L +E  L+  +L++Y  D R    +LA           +R     ++  F+
Sbjct: 17  EDLARFLDHLWLEGNLAANSLEAYSRDLRLLATYLAASQRR------LRDADAADLSLFL 70

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++R       RS+ R LS ++ F  + ++     +    ++++L     LP   +E +  
Sbjct: 71  AQRLQGGAALRSVARQLSSLRRFYAFAQREGWRGDDPSASLQHLHIGRHLPAVPSEGEVD 130

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L     L        +  R++A+L  LY  GLR+SE + L    +  +   +   GKG 
Sbjct: 131 AL-----LAAPDRRTVLGLRDAAMLETLYATGLRVSELVGLLCSQLDLEAGVVLTLGKGS 185

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K R++P+     + +  Y       L  + Q P LF  +RG+ ++   F + I+      
Sbjct: 186 KERLIPVGEVALETLHRYLREARGALLGHKQSPALFLTVRGEAMSRQRFWQTIKAHATKA 245

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+  + + H+LRH+FATHLL +G DLRS+Q +LGH +L+TT+IYT++        +  ++
Sbjct: 246 GIRSAFSPHSLRHAFATHLLDHGADLRSVQLMLGHAQLNTTEIYTHIAQAR----LQNLH 301

Query: 315 DQTHPS 320
            Q HP 
Sbjct: 302 RQHHPR 307


>gi|162147966|ref|YP_001602427.1| tyrosine recombinase xerD [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542583|ref|YP_002274812.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786543|emb|CAP56125.1| putative tyrosine recombinase xerD [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530260|gb|ACI50197.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 304

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 84/311 (27%), Positives = 139/311 (44%), Gaps = 16/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + + +L+ L  ERG +  TL++Y  D   F              +++       +R 
Sbjct: 1   MSAQAEAFLEMLAAERGAAANTLKAYGRDLDDFAAHARQAG------RSLHDADSALLRD 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++       +  R+  R LS +K F  +L +  +  ++    +   +   +LPR L E +
Sbjct: 55  YMGSLARAGLSPRTQARRLSCLKQFHLFLAREGVRQDNPAELLDTPRLPATLPRFLTEDE 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+   +               A L +LY  GLRISE L+L  + +  D   L ++GK
Sbjct: 115 VDALLAACVPPPDGGAARRWLVARAALEMLYASGLRISELLALPRRGLGRDAQMLMVRGK 174

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRR 252
           G + R+VPL  + R A     +             LF G    +PL    F R +  +  
Sbjct: 175 GGRERLVPLSAAARAA----AEALIAHDGPRRSPYLFPGRAPDRPLTRQGFDRILHDVAL 230

Query: 253 YLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             GL P   + H LRHSFATH+L+ G DLR++Q +LGH  ++TTQIYT+V ++     + 
Sbjct: 231 RAGLDPARLSPHVLRHSFATHMLARGADLRALQVLLGHADIATTQIYTHVLAER----LR 286

Query: 312 EIYDQTHPSIT 322
           +  +  HP   
Sbjct: 287 QAVEAYHPLAR 297


>gi|225076001|ref|ZP_03719200.1| hypothetical protein NEIFLAOT_01028 [Neisseria flavescens
           NRL30031/H210]
 gi|224952716|gb|EEG33925.1| hypothetical protein NEIFLAOT_01028 [Neisseria flavescens
           NRL30031/H210]
          Length = 316

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 82/309 (26%), Positives = 149/309 (48%), Gaps = 20/309 (6%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             + +L+ L +++G S+ T+ +Y  D  + +  L    E  +        +  +  A + 
Sbjct: 28  HLERYLKTL-LQQGKSEHTVSAYWRDLSELMRLLPDNLENGLP-------TRRDFVAVLK 79

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           K   + + + SL R LS  + +  +L + ++       NM+  +    LP+AL ++    
Sbjct: 80  KLSQKGLSESSLARKLSVWRQYCSWLVQIEVMESDPTFNMKAPRLPERLPKALPQEPLNH 139

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           ++D+     +     +D R+ A+  L+YG GLR+SE   L    I+ D+  + ++GKG K
Sbjct: 140 ILDH-----APVDDELDVRDKAMFELMYGSGLRLSEIQGLNLDGIVLDEGWVSVKGKGGK 194

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R VPL+     A+ +Y  +    +    +  LF    G  L     Q+ ++     +G 
Sbjct: 195 QRQVPLVAKSIAALRDYLAVR---IAKEGEQALFTNKNGGRLGQRQIQKRLQAWAVRVGS 251

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H +RHS+ATHLL   GD+R++Q +LGH  LS TQ+YT ++     D +  +YD+
Sbjct: 252 ASHISPHMMRHSYATHLLQASGDIRAVQELLGHSNLSATQVYTKLDF----DHLARVYDE 307

Query: 317 THPSITQKD 325
            HP   +K 
Sbjct: 308 AHPRAKRKK 316


>gi|315646363|ref|ZP_07899481.1| integrase family protein [Paenibacillus vortex V453]
 gi|315278006|gb|EFU41326.1| integrase family protein [Paenibacillus vortex V453]
          Length = 294

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 141/304 (46%), Gaps = 16/304 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              ++  LE  + LS+ T++SY  D   F+ + A        +   + ++ T +  ++ +
Sbjct: 5   LDEYVTYLEEVKRLSRSTIESYRADLNGFIEYAADRE-----VTHPQDVNRTVLGLYLGR 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R Q     S  R  + ++SF +YL ++ +  +     +   K     P+A+  +Q   L
Sbjct: 60  LRQQGKAASSQLRCTASLRSFFQYLVRQSVIGQDPTQLLDRPKPERKPPQAVTIEQVDKL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +               AR+ A+L LLY  G+++SE +SL+  ++  +   LR    G K 
Sbjct: 120 L-----SAPDSDTPQGARDRAMLELLYASGIKVSELVSLSIHDLNMEMRFLRCAVPGGKE 174

Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RI+P+     +++  Y   +    +    +  LF    G  L    F + I++  +   +
Sbjct: 175 RILPISQIAAQSVAYYMRDMRSQLIRDAEEEALFLNSLGTRLTRQGFWKIIKKYGKLAEI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               T HTLRHSFA HLL NG DLRS+Q +LGH  LSTT +Y     ++    M E+YD 
Sbjct: 235 DEEITPHTLRHSFAIHLLQNGADLRSVQEMLGHSALSTTGMY-----QSTKKSMKEVYDH 289

Query: 317 THPS 320
            HP 
Sbjct: 290 YHPR 293


>gi|255320348|ref|ZP_05361532.1| site-specific recombinase XerC [Acinetobacter radioresistens SK82]
 gi|262379369|ref|ZP_06072525.1| tyrosine recombinase XerC [Acinetobacter radioresistens SH164]
 gi|255302543|gb|EET81776.1| site-specific recombinase XerC [Acinetobacter radioresistens SK82]
 gi|262298826|gb|EEY86739.1| tyrosine recombinase XerC [Acinetobacter radioresistens SH164]
          Length = 306

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 92/316 (29%), Positives = 163/316 (51%), Gaps = 14/316 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +  E L     WL+  EI+   S  TL +Y  D + FL F A      +    +  +  +
Sbjct: 1   MQPEALHLLSMWLKEREIQNQ-SAHTLSAYARDVKDFLDFCA------VKKLPLNSIEAS 53

Query: 70  EIRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           ++R +++ K   +++   SL+R LS I+ F+K+ ++ +    +   + +  ++   LP  
Sbjct: 54  DLREYLALKVEREQLSSSSLQRHLSAIRQFMKWAEQGQYLGFNPADDFQLKRQPRPLPGM 113

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++ +    ++D        + + +  R+ A+L LLY  GLR++E  SL  ++I  ++  L
Sbjct: 114 IDIETVQQILDQPAPEK-LQDQHLWLRDKAMLELLYSSGLRLTELQSLCMKDIDFNRRLL 172

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           RI GKG+K RIVP      +++L++ +    +    N    +F   +G  L P   +  +
Sbjct: 173 RITGKGNKTRIVPFGTQAYESLLKWLEVYRLWQGQFNADSAVFISQKGGQLGPRQIENRV 232

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +      G+ +    H LRH FA+H+LSN GDLR++Q +LGH  LSTTQIYT+++     
Sbjct: 233 KLQALRAGVNIDLHPHLLRHCFASHMLSNSGDLRAVQEMLGHSNLSTTQIYTHIDF---- 288

Query: 308 DWMMEIYDQTHPSITQ 323
           D + +IYDQ HP   +
Sbjct: 289 DHLAKIYDQAHPRAVK 304


>gi|157827676|ref|YP_001496740.1| site-specific tyrosine recombinase XerC [Rickettsia bellii OSU
           85-389]
 gi|166918898|sp|A8GXV3|XERC_RICB8 RecName: Full=Tyrosine recombinase xerC
 gi|157802980|gb|ABV79703.1| site-specific tyrosine recombinase XerC [Rickettsia bellii OSU
           85-389]
          Length = 305

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 116/311 (37%), Positives = 184/311 (59%), Gaps = 9/311 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++  ++ +    W + L +++  S  TL SY  D + FL F+ +Y  + +T+  I+    
Sbjct: 1   MLDTQIQELIIKWQKYLSLQKNYSNHTLISYNNDLKHFLEFMNYYNSDIVTMDYIKAADI 60

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R++++KR+       S+ R LS IK+F K+L+K        + ++++ KKS  LP+A
Sbjct: 61  RLMRSWLAKRKCDNFVTSSIARGLSAIKNFYKFLEKTAELHNHVVFSIKSPKKSKLLPKA 120

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+E++    +D+  +     ++WI+ RN A+L L+Y  GLRISEALS+T  + + +   +
Sbjct: 121 LSEEEVNISLDH--IEEYGNSQWIEIRNKALLVLIYASGLRISEALSITKLH-LQNLEFI 177

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           +I GKG K R++P L   R  I EY +  P++L  +   P+FRG +GK L P VF R + 
Sbjct: 178 KIMGKGSKERVIPWLAIARNLITEYLEKLPYELKDDE--PIFRGKQGKKLQPPVFNRELI 235

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L+R+ GLP   +AH+ RHSFA+HLL NG DLRSIQ +LGH  LSTTQ YT  + K+   
Sbjct: 236 KLKRFYGLPEHLSAHSFRHSFASHLLENGADLRSIQELLGHKSLSTTQSYTKTSIKH--- 292

Query: 309 WMMEIYDQTHP 319
            +   Y   HP
Sbjct: 293 -LETAYVTAHP 302


>gi|39933583|ref|NP_945859.1| tyrosine recombinase XerD [Rhodopseudomonas palustris CGA009]
 gi|39647429|emb|CAE25950.1| site-specific integrase/recombinase XerD [Rhodopseudomonas
           palustris CGA009]
          Length = 338

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 139/304 (45%), Gaps = 14/304 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  +  E+G S  TL +Y  D      FL+          +I       +R++++  
Sbjct: 35  ELFLDMIAAEQGASANTLDAYRRDLADLSHFLSRRR------LSIGSADTAALRSYLADL 88

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S+ R LS ++   ++L   +I  +     +   K+  SLP+ L+      L+
Sbjct: 89  DNRGFATSSVARRLSALRHLFRFLLSERIRADDPAAILAGPKRGRSLPKVLSIADVDQLL 148

Query: 139 ---DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
                 +       +   AR + +L +LY  GLR+SE +SL       D   + ++GKGD
Sbjct: 149 ACARQEIDAAEGGARLRAARLNCLLEVLYATGLRVSELVSLPLSAARRDARMIVVRGKGD 208

Query: 196 KIRIVPLLPSVRKAILEYYDL---CPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLR 251
           K R+VPL    ++A+  Y +         +      LF        L    F R ++ L 
Sbjct: 209 KERLVPLNAGAKQAMARYLEEMAAAKAPKDGPAPKWLFPSFGESGYLTRQHFARDLKDLA 268

Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              GL P   + H LRH+FA+HLL NG DLR +Q++LGH  +STTQIYT+V  +     +
Sbjct: 269 ARAGLAPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEERLKSLV 328

Query: 311 MEIY 314
            +++
Sbjct: 329 RDLH 332


>gi|298346458|ref|YP_003719145.1| putative integrase/recombinase XerD [Mobiluncus curtisii ATCC
           43063]
 gi|298236519|gb|ADI67651.1| possible integrase/recombinase XerD [Mobiluncus curtisii ATCC
           43063]
          Length = 323

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 100/331 (30%), Positives = 155/331 (46%), Gaps = 18/331 (5%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY-TEEKIT 59
           M  NN   + + E+  +   WL    + RGLS  T+++Y  D R+ + FL    + +   
Sbjct: 1   MSENNPAAVFAREITADFGQWL---SVNRGLSPQTVRAYLTDLRELMTFLVDSDSGDGPA 57

Query: 60  IQTIRQ--LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
            Q +R    +   IRA++       +   +L R ++  ++F  + + R I       N+R
Sbjct: 58  AQQLRADLANPARIRAWLGAMSRAGMSRATLARRVASFRTFASWAQVRGIVPGDAGQNLR 117

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETK----WIDARNSAILYLLYGCGLRISEA 173
             +  N+LP  L+   A  L++        E       +  R+ A L LLY  G+R+SE 
Sbjct: 118 ASRPDNALPTVLSATDAAHLLETARAAAYPEASTAPNPVKLRDWAALELLYATGIRVSEL 177

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL---F 230
             L   NI   Q T+R+ GKGDK R+VP       A+ EY +     L    +  L   F
Sbjct: 178 TGLELGNINKSQRTVRVTGKGDKQRVVPYGIPAGLALEEYLEKGRPALVNPEKPALNRVF 237

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
            G +G  L+  + +  + +L     +P     H LRH+ ATHLL  G DLRS+Q ILGH 
Sbjct: 238 LGAKGGMLDTRIVRGMLHRLTAQAEVP-DLGPHGLRHTAATHLLDGGADLRSVQEILGHA 296

Query: 291 RLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            L+TTQ YT+++     D +  +Y Q HP  
Sbjct: 297 SLATTQRYTHLS----MDKLRAVYLQAHPRA 323


>gi|227879131|ref|ZP_03997015.1| integrase-recombinase [Lactobacillus crispatus JV-V01]
 gi|227861288|gb|EEJ68923.1| integrase-recombinase [Lactobacillus crispatus JV-V01]
          Length = 302

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 80/308 (25%), Positives = 141/308 (45%), Gaps = 14/308 (4%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E   +L  L+ ER  S  T+ +Y+ D  +   F      E        ++   +I+ ++ 
Sbjct: 7   ELDQFLSYLQNERHYSAKTVLAYQTDLHEAERFW----HENGGFPGWTKVRERDIQVYLQ 62

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               +K+   S  R +S + SF ++L +RK+        +   +    LP+   + +   
Sbjct: 63  HLAERKLARSSQLRKMSSLHSFYRFLTRRKLVAIDPTKGITLRRGEKKLPQFFYQPELKQ 122

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           + D++        K +  RN A+  L Y  G+R+SE  +LT   +  D  T+ + GKG+K
Sbjct: 123 VFDSL-----KGNKPLTMRNLAMFELFYATGMRVSEVSNLTLNQLDLDLQTILVHGKGNK 177

Query: 197 IRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R V      +K+++ Y  +  P  L  + +  +F   +G  +     +  +++     G
Sbjct: 178 DRYVAFDDKTKKSLIAYLENARPLLLKNDDEQHVFLNNQGTGITSRGIETVMQKTFNQAG 237

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +      H LRHSFAT +L+NG DLRS+Q +LGH  LS TQIYT+V   +    +   Y 
Sbjct: 238 ISGKVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAH----LKSDYQ 293

Query: 316 QTHPSITQ 323
           +  P   +
Sbjct: 294 KYFPRNKE 301


>gi|157364345|ref|YP_001471112.1| phage integrase family protein [Thermotoga lettingae TMO]
 gi|259710440|sp|A8F7B4|XERC_THELT RecName: Full=Tyrosine recombinase xerC
 gi|157314949|gb|ABV34048.1| phage integrase family protein [Thermotoga lettingae TMO]
          Length = 286

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 91/306 (29%), Positives = 147/306 (48%), Gaps = 24/306 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +  QN+   L   R LS  T+ +Y  D +QFL FL     E      ++ +S   I  
Sbjct: 1   MERILQNFSDYLMHVRRLSDHTVVAYVGDVKQFLCFLIENDIE------LKDVSRLHIEE 54

Query: 74  FISKRRTQK--IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           +I K   QK  +   SL R +S ++SF  YL+   I  E+ +  +RN K    +P  L  
Sbjct: 55  YIKKLSKQKTKLNSTSLARKISSLRSFFNYLQLTSIKDENPVEGIRNPKIRRRIPDFLLP 114

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI- 190
            +   L++  +          + R+  +L LLY CGLR+SE  +L  +++    + ++I 
Sbjct: 115 SEIQKLLEFSM---------KNQRDYLMLSLLYFCGLRVSELCNLRVEDLSFSPAFVKIT 165

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG K RIVPL   + + +  Y   C      + +  LF       ++P    R +R+ 
Sbjct: 166 MGKGKKDRIVPLTSKLAEKLENYITSC----GKSPEDYLFGSQ--IKIHPSTVFRIVRKY 219

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+      HTLRH+FATHLL  G ++R +Q +LGH  LSTT +Y +V  +   D +
Sbjct: 220 TMMCGIKKRIHPHTLRHTFATHLLQKGVNIRVVQDLLGHSNLSTTSVYLHVVDQEKFDAI 279

Query: 311 MEIYDQ 316
            ++  +
Sbjct: 280 NKLLQE 285


>gi|238756290|ref|ZP_04617605.1| Tyrosine recombinase [Yersinia ruckeri ATCC 29473]
 gi|238705496|gb|EEP97898.1| Tyrosine recombinase [Yersinia ruckeri ATCC 29473]
          Length = 276

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 72/289 (24%), Positives = 136/289 (47%), Gaps = 17/289 (5%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T+ SY    +  +         ++ +     L   ++R+ +S+ +   +   SL   LS 
Sbjct: 2   TITSYSRQLQALMELAG-----QMELSHWENLDAAQVRSLVSRSKRAGLQSASLALRLSA 56

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           ++SFL +L  + +   +    +   +    LP+ ++  +   L+D  L         +  
Sbjct: 57  LRSFLDWLVSQGVLHANPAKGVSTPRTGRHLPKNIDVDEVSRLLDIDL------NDPLAV 110

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A+L ++YG GLR++E + +  +++      + + GKG K R VP+  +    +  + 
Sbjct: 111 RDRAMLEVMYGAGLRLAELVGMDGKHVDLASGEIWVMGKGSKERKVPMGATAVTWLQHWL 170

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
            L   DL       +F    GK ++    Q+   +     G+      H LRHSFATH+L
Sbjct: 171 ALR--DLFAPSDDAIFLANTGKRISARNVQKRFAEWGIKQGVSSHIHPHKLRHSFATHML 228

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            + GDLR++Q +LGH  L+TTQIYT+++ ++    +  +YD  HP   +
Sbjct: 229 ESSGDLRAVQELLGHANLTTTQIYTHLDFQH----LATVYDAAHPRAKR 273


>gi|302528010|ref|ZP_07280352.1| tyrosine recombinase XerD [Streptomyces sp. AA4]
 gi|302436905|gb|EFL08721.1| tyrosine recombinase XerD [Streptomyces sp. AA4]
          Length = 310

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 91/316 (28%), Positives = 146/316 (46%), Gaps = 21/316 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E+      +L +L +ERG ++ TL SY  D R++   L     E   +  + +++   + 
Sbjct: 7   EVRGAIATYLDHLVVERGTARNTLDSYSRDLRRYAAHL-----EAAGVVRLAEVTPAHVT 61

Query: 73  AFISKRRT-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
           +F +  R      Q +   S  R+L  ++   K+     +T      ++R    +  LP+
Sbjct: 62  SFGAALREGDEEHQPLAASSAARALVAVRGLHKFAHADGLTEHDPARDVRPPAAAKRLPK 121

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           AL     L L+D     T         R+ A+L LLY  G RISEA+ L   ++ D + T
Sbjct: 122 ALPVADVLKLLD-----TPPRDGERALRDRALLELLYSTGARISEAVGLDVDDVDDTERT 176

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQR 245
           + + GKG K R+VP+     +A+  Y       L  N      +F   RG  L+     +
Sbjct: 177 VLLDGKGGKQRLVPIGRPALEALDAYLVRARPALAANGRGTSAIFLNARGSRLSRQSAWQ 236

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            ++      G+  + + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQ+YT V    
Sbjct: 237 VLKDTAERAGITAAVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVT--- 293

Query: 306 GGDWMMEIYDQTHPSI 321
               + E+Y   HP  
Sbjct: 294 -VTTLREVYATAHPRA 308


>gi|256841123|ref|ZP_05546630.1| tyrosine recombinase XerC [Parabacteroides sp. D13]
 gi|256736966|gb|EEU50293.1| tyrosine recombinase XerC [Parabacteroides sp. D13]
          Length = 302

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 72/307 (23%), Positives = 147/307 (47%), Gaps = 13/307 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             ++L  L  ER  S  T+ +Y  D  QF  ++  + E    +    ++    +R++I  
Sbjct: 3   IDDFLNYLRYERNYSNYTIGAYSKDLDQFQRYVREHRE---GVFDPGEIDSDFVRSWIVC 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +K    S+ R LS +KSF K+L KR I + + +  +   K    LP  + + +   L
Sbjct: 60  LMDEKFSPVSVNRKLSSLKSFFKFLMKRGIVSANPLRLVSGPKTKKPLPCFIKDSELEAL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D        +  +   RN  ++ +LY  G+R SE + +   ++  +   +++ GK +K 
Sbjct: 120 LD----GDGFDEDFEGVRNRLVIEMLYDTGMRRSELIGIRNVDVDYEAMQVKVTGKRNKQ 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R++P    ++  +L Y ++   ++    +   F    G  L+ G+    +++    + + 
Sbjct: 176 RLIPFAEGLKNLMLAYTEVRDREVEAAGE-WFFVRKNGNQLSTGIVYNIVKKQLSEIPML 234

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRHSFAT +L+NG +L +++ +LGH  L++T +YT+   +     + ++Y   
Sbjct: 235 AKRSPHVLRHSFATSMLNNGAELNAVKDLLGHSSLASTSVYTHTTFEE----LKKVY-HA 289

Query: 318 HPSITQK 324
           HP   ++
Sbjct: 290 HPRAKKE 296


>gi|269792953|ref|YP_003317857.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100588|gb|ACZ19575.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 292

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 141/305 (46%), Gaps = 24/305 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             ++L+ L+   G S+ T+ +Y  D  QF  +L     E+  +  ++ ++   +R F+  
Sbjct: 2   IDSFLEYLKSL-GRSEHTVINYGVDLGQFAEYL-----EQAEVHRVQDITRDHVRGFLRS 55

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    S  R +S I+ F+ YL+   +        ++  + S  LPRA++      L
Sbjct: 56  LVGYGFAKASALRKMSSIRGFMGYLRDIGVIERDPSEGVKGPRSSPGLPRAISYPDVCRL 115

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++         +     R+  ++ LLYG GLR+SE   L   ++  ++  +R+ GKG K 
Sbjct: 116 LEEG------PSGREAFRDRLVMELLYGSGLRVSELCDLDWDDVDVEERWIRVMGKGSKG 169

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGL 256
           R+VP    V+  +  + ++      +    PLF G RG + L      R +    R +GL
Sbjct: 170 RMVPFGSIVQDMLRRWGEM------VGRAGPLFPGKRGAERLTQRTVHRIVSGCARRVGL 223

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRHSFATHLL  G  LR +Q ++GH  L TTQ Y +V ++     M   Y  
Sbjct: 224 -FGVSPHTLRHSFATHLLEGGASLRVVQELMGHESLVTTQRYLDVTAER----MRFSYQV 278

Query: 317 THPSI 321
            HP  
Sbjct: 279 HHPRA 283


>gi|121998438|ref|YP_001003225.1| tyrosine recombinase XerD [Halorhodospira halophila SL1]
 gi|121589843|gb|ABM62423.1| tyrosine recombinase XerD [Halorhodospira halophila SL1]
          Length = 254

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 76/252 (30%), Positives = 125/252 (49%), Gaps = 10/252 (3%)

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++ A++++R       R+  R LS ++ F + L      ++     +   +    LP AL
Sbjct: 11  DVFAYLAERVAAGARPRTTARLLSSLRRFYRRLVSTGERSDDPTAEVEAPRLGQPLPGAL 70

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            E+Q   L     L        +  R+  +L +LY  GLR+SE ++L    +   Q  +R
Sbjct: 71  TERQVEAL-----LAAPDTGDPLGLRDRCLLEVLYATGLRVSELVALRVDGVSLRQGVVR 125

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           + GKGD+ R+VPL       +  Y + + P  L+      LF   RG+ L    F   ++
Sbjct: 126 VIGKGDRERLVPLGEEAVDWVRRYLEEVRPLLLDGRAAEALFVTRRGEGLTRQAFWYRVK 185

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     G+  + + HTLRHSFATHL+++G DLR +Q +LGH  LSTTQIYT+V  +    
Sbjct: 186 RYAAAAGIDPAISPHTLRHSFATHLINHGADLRVVQMLLGHADLSTTQIYTHVARQR--- 242

Query: 309 WMMEIYDQTHPS 320
            + +++   HP 
Sbjct: 243 -LQQLHAAHHPR 253


>gi|120600505|ref|YP_965079.1| tyrosine recombinase XerC [Shewanella sp. W3-18-1]
 gi|146294663|ref|YP_001185087.1| tyrosine recombinase XerC [Shewanella putrefaciens CN-32]
 gi|166918902|sp|A4YBF5|XERC_SHEPC RecName: Full=Tyrosine recombinase xerC
 gi|166918903|sp|A1RPD0|XERC_SHESW RecName: Full=Tyrosine recombinase xerC
 gi|120560598|gb|ABM26525.1| tyrosine recombinase XerC [Shewanella sp. W3-18-1]
 gi|145566353|gb|ABP77288.1| tyrosine recombinase XerC [Shewanella putrefaciens CN-32]
 gi|319427899|gb|ADV55973.1| tyrosine recombinase XerC [Shewanella putrefaciens 200]
          Length = 302

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 81/310 (26%), Positives = 147/310 (47%), Gaps = 19/310 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q++ + L  ER LS  T+ +Y  +  +    L           T+  +     +  ++K
Sbjct: 12  LQDYERYLHSERQLSAHTVHNYLYELNRVSTLL-------PKDVTLLNVGREHWQQVLAK 64

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + +  RSL   LS IK + ++L +  +   +    +   K++  LP+ ++      L
Sbjct: 65  LHRKGLSPRSLSLCLSAIKQWGEFLLREGMIAVNPAKGLSAPKQAKPLPKNMDVDSLTHL 124

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++         T  +  R+ A++ L Y  GLR++E  +L   ++  D   +R+ GKG+K 
Sbjct: 125 LEI------EGTDPLTLRDKAMMELFYSSGLRLAELAALNLSSVQYDLREVRVLGKGNKE 178

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RIVP+     KA+  +          +    LF   +G+ L+    Q  + +  +   L 
Sbjct: 179 RIVPVGSYAIKALEAWLVCRQQIPCEDC--ALFVTGKGRRLSHRSIQSRMAKWGQEQALS 236

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           +    H LRHSFATH+L +  DLR++Q +LGH  LSTTQIYT+++ ++    + ++YD  
Sbjct: 237 VRVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQIYTSLDFQH----LAKVYDSA 292

Query: 318 HPSITQKDKK 327
           HP   ++  K
Sbjct: 293 HPRAKKQQDK 302


>gi|261379271|ref|ZP_05983844.1| tyrosine recombinase XerC [Neisseria subflava NJ9703]
 gi|284797703|gb|EFC53050.1| tyrosine recombinase XerC [Neisseria subflava NJ9703]
          Length = 298

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 82/309 (26%), Positives = 148/309 (47%), Gaps = 20/309 (6%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             + +L+ L  ++G S+ T+ +Y  D  + +  L    E  +        +  +  A + 
Sbjct: 10  HLERYLKTLS-QQGKSQHTVSAYRRDLSELMRLLPDNLENGLP-------TRRDFVAVLK 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           K   + + + SL R LS  + +  +L + ++       NM+  +    LP+AL ++    
Sbjct: 62  KLSQKGLSESSLARKLSAWRQYCSWLVQIEVMESDPTFNMKAPRLPERLPKALLQEPLNH 121

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           ++D+     +     +D R+ A+  L+YG GLR+SE   L   +I+ D+  + + GKG K
Sbjct: 122 ILDH-----APVDDELDVRDKAMFELMYGSGLRLSEIQGLNLNSIVLDEGWVSVNGKGGK 176

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R VPL+     A+ +Y  +    +    +  LF    G  L     Q+ ++     +G 
Sbjct: 177 QRQVPLVGKSIAALRDYLAVR---IAKEGEQALFTNKNGGRLGQRQIQKRLQAWAVRVGS 233

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H +RHS+ATHLL   GD+R++Q +LGH  LS TQ+YT ++     D +  +YD+
Sbjct: 234 ASHISPHMMRHSYATHLLQASGDIRAVQELLGHSNLSATQVYTKLDF----DHLARVYDE 289

Query: 317 THPSITQKD 325
            HP   +K 
Sbjct: 290 AHPRAKRKK 298


>gi|293380240|ref|ZP_06626321.1| putative tyrosine recombinase XerC [Lactobacillus crispatus 214-1]
 gi|290923207|gb|EFE00129.1| putative tyrosine recombinase XerC [Lactobacillus crispatus 214-1]
          Length = 302

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 80/308 (25%), Positives = 141/308 (45%), Gaps = 14/308 (4%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E   +L  L+ ER  S  T+ +Y+ D  +   F      E        ++   +I+ ++ 
Sbjct: 7   ELDQFLSYLQNERHYSAKTVLAYQTDLHEAERFW----HENGGFPGWTKVRERDIQVYLQ 62

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               +K+   S  R +S + SF ++L +RK+        +   +    LP+   + +   
Sbjct: 63  HLAERKLARSSQLRKMSSLHSFYRFLTRRKLVAIDPTQGITLRRGEKKLPQFFYQPELKQ 122

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           + D++        K +  RN A+  L Y  G+R+SE  +LT   +  D  T+ + GKG+K
Sbjct: 123 VFDSL-----KGNKPLTMRNLAMFELFYATGMRVSEVSNLTLNQLDLDLQTILVHGKGNK 177

Query: 197 IRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R V      +K+++ Y  +  P  L  + +  +F   +G  +     +  +++     G
Sbjct: 178 DRYVAFDDKTKKSLIAYLENARPLLLKNDDEQHVFLNNQGTGITSRGIETVMQKTFNQAG 237

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +      H LRHSFAT +L+NG DLRS+Q +LGH  LS TQIYT+V   +    +   Y 
Sbjct: 238 ISGKVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAH----LKSDYQ 293

Query: 316 QTHPSITQ 323
           +  P   +
Sbjct: 294 KYFPRNKE 301


>gi|149917823|ref|ZP_01906318.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
 gi|149821343|gb|EDM80745.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
          Length = 346

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 95/328 (28%), Positives = 165/328 (50%), Gaps = 32/328 (9%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +   ++L +L+ ER LS  T ++Y  D   F+  +    +    ++ +R     E+RA
Sbjct: 1   MREALASFLVHLDKERRLSPNTCRAYARDIEGFIDNVEARRDRPAKLRDLR---LREVRA 57

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++++   ++    ++ R LS +++F +Y ++     E+ +  MR  K    LP AL  + 
Sbjct: 58  YLAELHGKR-AASTVGRKLSALRTFAEYCRREGWIAENEVALMRRPKLGRKLPVALPVED 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD------QST 187
              ++D            +  R+ A+L +LYG GLR+SEA++L   ++  +      + T
Sbjct: 117 LTEMIDG-----EQRPGAVGLRDRALLEVLYGAGLRVSEAVALNLADLRWEGSGDAARLT 171

Query: 188 LRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDL------------NLNIQLPLFRGIR 234
           LR+ QGKG+K R+VPL     +A+  + D     L             ++    +F G R
Sbjct: 172 LRVLQGKGNKDRVVPLGRKGAEAMRAWLDTREGLLAPTPREGMRSPARIDAGKAVFLGAR 231

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G  L+  V +  + +  +  G       H LRHSFATHLL +G DLRSIQS+LGH  LST
Sbjct: 232 GGRLSTRVAREVVYRRCQASGARAVVGPHGLRHSFATHLLQSGCDLRSIQSMLGHASLST 291

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           TQ YT+++  +    +  +Y++ HP  +
Sbjct: 292 TQRYTHLDMGH----LFSLYERAHPRAS 315


>gi|91781471|ref|YP_556677.1| site-specific tyrosine recombinase XerC [Burkholderia xenovorans
           LB400]
 gi|91685425|gb|ABE28625.1| Putative integrase/recombinase [Burkholderia xenovorans LB400]
          Length = 307

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 87/321 (27%), Positives = 156/321 (48%), Gaps = 29/321 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                +L NLE ER LS  TL+ Y  +  +  +            + +  LS  +IR  +
Sbjct: 5   DPIAAYLSNLEHERRLSAHTLRGYTHELEELKLLAKG--------RPLESLSAVDIRGAV 56

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           S+     +  RS+   LS  ++F ++L  R     + +  +R  K+  +LP+AL+   A 
Sbjct: 57  SRAHAGGLTARSISHRLSAWRAFYRWLAGRVDLPANPVATVRAPKQPKTLPKALSVDDAT 116

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-----------DD 184
            L+++    +         R+ A+L L Y  GLR++E + L  +               D
Sbjct: 117 RLMESPPAASPE-----GLRDHAMLELFYSSGLRLAELVGLDARFADADGYRSAGWIKLD 171

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
            + + + GKG++ R+VP+     +A+  +  +    +  +   PLF   RG  L+P V +
Sbjct: 172 SAEVEVLGKGNRRRVVPVGSKALEALAAWLAVRDQMVKHDPH-PLFLSARGNRLSPNVVR 230

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +++     G+P +   H LRHSFATH+L + GDLR++Q +LGH  ++ TQ+YT ++ +
Sbjct: 231 ERVKRAALVAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTALDFQ 290

Query: 305 NGGDWMMEIYDQTHPSITQKD 325
           +    +  +YDQ HP   ++D
Sbjct: 291 H----LAHVYDQAHPRAKKRD 307


>gi|116618278|ref|YP_818649.1| tyrosine recombinase XerC subunit [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097125|gb|ABJ62276.1| tyrosine recombinase XerC subunit [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 300

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 85/309 (27%), Positives = 145/309 (46%), Gaps = 13/309 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +E Q +   LE ER  S  TL++Y  D  +F      Y  E        ++   ++R ++
Sbjct: 4   REEQLYHDYLESERQYSPQTLKAYLTDIAEF----KNYLHESGGFTKFGEVQTLDVRVYL 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +K+   ++ R +S ++ F ++L   +   ++   ++   K  N LP    E +  
Sbjct: 60  NDLYEKKLARTTISRKISSLRMFYQFLITNQFAIDNPFDSISLKKHQNQLPDFFYEDELH 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L D       +   ++  RN+A+L  LY  G+R++E   LT   +   Q  + I GKG+
Sbjct: 120 ELFDV----AYNHEDYLWERNAALLEFLYATGIRVAEIAGLTLSQLDFSQRLVLIHGKGN 175

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K R VP        + EY       L +N +   +F   RG+P+ P      + QL +  
Sbjct: 176 KDRYVPFGHFAENIMKEYITDLRASLTVNQEHEYVFVNHRGEPITPAGITYILNQLMQRS 235

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            L      H LRH+FATHL++ G D+R++Q +LGH  LSTTQ+YT+V  ++    + + Y
Sbjct: 236 ALTGKIHPHMLRHTFATHLINRGADMRTVQELLGHVNLSTTQMYTHVTRES----LQKNY 291

Query: 315 DQTHPSITQ 323
               P   +
Sbjct: 292 QNFFPRANK 300


>gi|149278899|ref|ZP_01885034.1| integrase [Pedobacter sp. BAL39]
 gi|149230518|gb|EDM35902.1| integrase [Pedobacter sp. BAL39]
          Length = 294

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 83/302 (27%), Positives = 148/302 (49%), Gaps = 12/302 (3%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L+ E+  S  T+QSYE D  QF  +L+   E       +      ++R ++    
Sbjct: 5   EFLTYLKHEKRYSPHTIQSYETDLLQFEAYLSDVYE-----LALPDAGRAQVRDYMVWLM 59

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            ++I +RS+ R LS ++SF K+L        S +  +R  K  N LP  + + +   L+D
Sbjct: 60  ERQIAERSVARKLSALRSFYKHLVAGGAIASSPMALVRAPKVPNRLPVFVEDHKLDQLLD 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           +  +       +   R+  ++ +L+G G+R+SE +++  Q++    S++++ GK +K RI
Sbjct: 120 STEI---FNDSFSSVRDKLVIEMLFGTGMRVSELVNVKLQDVDFYASSVKVLGKRNKERI 176

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +P+  ++   +  Y D        N    LF   +G  +  G   + +     Y+     
Sbjct: 177 IPIGKTLTSLLKVYIDTKTLQDFNNKTEYLFVTNKGAAVTRGFIYKIVTSYLTYVSTQDK 236

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + H LRHS+AT LL+ G DL +I+ +LGH  L+ TQ+YT+    N  + +  IY Q HP
Sbjct: 237 KSPHVLRHSYATSLLNRGADLNAIKELLGHASLAATQVYTH----NSIERLKSIYKQAHP 292

Query: 320 SI 321
             
Sbjct: 293 KA 294


>gi|255530752|ref|YP_003091124.1| integrase family protein [Pedobacter heparinus DSM 2366]
 gi|255343736|gb|ACU03062.1| integrase family protein [Pedobacter heparinus DSM 2366]
          Length = 294

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 91/304 (29%), Positives = 154/304 (50%), Gaps = 12/304 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L  L+ E+  S  T+QSY+ D  QF  F+    E       + ++ Y  IR FI  
Sbjct: 3   VEHFLTYLQHEKRYSSHTIQSYQTDLLQFTDFMQQTFE-----LPLTEVKYVHIRNFIVA 57

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
               +I + S+ R LS ++SF KYL +  + + + +  ++  K    LP  ++E +   L
Sbjct: 58  LMEDEISENSVGRKLSALRSFYKYLLRENVLSSNPMALVKAPKVPKRLPVFVDEGKLDLL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D+       +  +   R+  ++  L+G G+R++E LSL   +I   +ST+R+ GK  K 
Sbjct: 118 LDSEEF---FDGSFPSLRDKTVIETLFGTGIRLAELLSLKETDINFYESTIRVMGKRSKE 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RIVP+  ++R+    Y +L       N    LF   +G    P +  R +++   Y+   
Sbjct: 175 RIVPIGKTLREQFRVYMELKTLQNFDNKTTMLFVTDKGAAAYPKLIYRTVQRYLTYVSTQ 234

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRHS+AT LL+ G DL +I+ +LGH  L+ TQ+YT+    N  + +  IY Q 
Sbjct: 235 DKKSPHVLRHSYATSLLNRGADLNAIKELLGHASLAATQVYTH----NSVERLKTIYKQA 290

Query: 318 HPSI 321
           HP  
Sbjct: 291 HPKA 294


>gi|227431599|ref|ZP_03913636.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352657|gb|EEJ42846.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 300

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 87/309 (28%), Positives = 145/309 (46%), Gaps = 13/309 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +E Q +   LE ER  S  TL++Y  D  +F      Y  E        ++   ++R ++
Sbjct: 4   REEQLYHDYLESERQYSPQTLKAYLTDIAEF----KNYLHESGGFTKFGEVQTLDVRVYL 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +K+   ++ R +S ++ F ++L   +   ++   ++   K  N LP    E +  
Sbjct: 60  NDLYEKKLARTTISRKISSLRMFYQFLIINQFAIDNPFDSISLKKHQNQLPDFFYEDELH 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L D    H  H    +  RN+A+L  LY  G+R++E   LT   +   Q  + I GKG+
Sbjct: 120 ELFDVTYNHEDH----LWERNAALLEFLYATGIRVAEIAGLTLSQLDFSQRLVLIHGKGN 175

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K R VP        + EY       L +N +   +F   RG+P+ P      + QL +  
Sbjct: 176 KDRYVPFGHFAENIMKEYITDLRASLTVNQEHEYVFVNHRGEPITPAGITYILNQLMQRS 235

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            L      H LRH+FATHL++ G D+R++Q +LGH  LSTTQ+YT+V  ++    + + Y
Sbjct: 236 ALTGKIHPHMLRHTFATHLINRGADMRTVQELLGHVNLSTTQMYTHVTRES----LQKNY 291

Query: 315 DQTHPSITQ 323
               P   +
Sbjct: 292 QNFFPRANK 300


>gi|119475308|ref|ZP_01615661.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143]
 gi|119451511|gb|EAW32744.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143]
          Length = 312

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 81/312 (25%), Positives = 144/312 (46%), Gaps = 18/312 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
              ++L   E+ R LS  TL +Y  D  +F  +          I        +++R +I+
Sbjct: 16  AIDSFLTYQEVARQLSPHTLSNYRRDLEKFADYCRHRA-----IVDHHHAHNSDVRQWIA 70

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                 +   SL RSLS ++SF KY  K+     +  + ++  +    LP+ L+      
Sbjct: 71  LLHRNGLSGTSLSRSLSSLRSFYKYSNKQGG-DHNPAIGIKAPRGEKRLPKTLDIDSMQQ 129

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
            +      +     W+  R+ AIL L Y  GLR+SE + +  ++       + + GKG K
Sbjct: 130 FL------SIDGDDWLTVRDRAILELFYSSGLRLSELVDMDTEDFDLQNGLIIVTGKGRK 183

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R +P+      A+  ++ +      +N     F   +G  L     Q+ +++     GL
Sbjct: 184 TRTLPVGSHAIAALKNWFSVRSDAHPINN--AAFVSAKGTRLGQRGIQQRLKKYSLQQGL 241

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRHSFA+H+L + GDLR++Q +LGH  ++TTQ+YT+++ ++    + ++YD 
Sbjct: 242 GQKIHPHMLRHSFASHMLESSGDLRAVQELLGHANITTTQVYTHLDFQH----LAKVYDT 297

Query: 317 THPSITQKDKKN 328
            HP   +K  K 
Sbjct: 298 AHPRAVRKKPKE 309


>gi|90961925|ref|YP_535841.1| XerC/CodV family integrase/recombinase [Lactobacillus salivarius
           UCC118]
 gi|90821119|gb|ABD99758.1| Integrase/recombinase, XerC/CodV family [Lactobacillus salivarius
           UCC118]
 gi|300214646|gb|ADJ79062.1| Integrase/recombinase, XerC/CodV family [Lactobacillus salivarius
           CECT 5713]
          Length = 298

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 89/310 (28%), Positives = 155/310 (50%), Gaps = 17/310 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + + + L IE+  S  TL++Y  D + F+ F+    +E    ++ +++   ++ A+
Sbjct: 3   LTWIEEFKKYLLIEKQYSDETLKAYSEDLQHFVDFI----DETGGAKSFKEIGSNDVHAY 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +S    +     S+ R +S +++F  +L K ++T E+    ++  +   SLPR   EK+ 
Sbjct: 59  MSYLYDR-YEMTSISRMISSLRAFYNFLIKNELTDENPFAYVQLKRHPRSLPRFFYEKEM 117

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L +      +     +  R+ A+L  LYG G+R+SE   L  +N+      + + GKG
Sbjct: 118 TALFE-----ATEGDTQMLIRDRALLESLYGTGMRVSECTGLKMENVDLTNKKMLLHGKG 172

Query: 195 DKIRIVPLLPSVRKAILEYYDLCP---FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           DK R+VP     ++A+  Y++       +        +F    G PL P      ++Q+ 
Sbjct: 173 DKDRLVPFGSYCQEALQRYFEQTRTPLMEKYHRDHDLVFVNHYGNPLTPAGVAYILKQIV 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +   L  S   H LRH+FATHL+SNG DLR++Q +LGH  LSTTQIYT+V  ++    + 
Sbjct: 233 KRSSLHTSIHPHELRHTFATHLMSNGADLRAVQELLGHSSLSTTQIYTHVTPEH----LQ 288

Query: 312 EIYDQTHPSI 321
             Y +  P  
Sbjct: 289 RDYRKFFPRA 298


>gi|301299347|ref|ZP_07205632.1| tyrosine recombinase XerC [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300853087|gb|EFK80686.1| tyrosine recombinase XerC [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 298

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 89/310 (28%), Positives = 154/310 (49%), Gaps = 17/310 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + + + L IE+  S  TL++Y  D + F+ F+    +E    ++ +++   ++ A+
Sbjct: 3   LTWIEEFKKYLLIEKQYSDETLKAYSEDLQHFVDFI----DETGGAKSFKEIGSNDVHAY 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +S    +     S+ R +S +++F  +L K ++T E+    ++  +   SLPR   EK+ 
Sbjct: 59  MSYLYDR-YEMTSISRMISSLRAFYNFLIKNELTDENPFAYVQLKRHPRSLPRFFYEKEM 117

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L +      +     +  R+ A+L  LYG G+R+SE   L   N+      + + GKG
Sbjct: 118 TALFE-----ATEGDTQMLIRDRALLESLYGTGMRVSECTGLKMGNVDLTNKKMLLHGKG 172

Query: 195 DKIRIVPLLPSVRKAILEYYDLCP---FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           DK R+VP     ++A+  Y++       +        +F    G PL P      ++Q+ 
Sbjct: 173 DKDRLVPFGSYCQEALQRYFEQTRTPLMEKYHRDHDLVFVNHYGNPLTPAGVAYILKQIV 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +   L  S   H LRH+FATHL+SNG DLR++Q +LGH  LSTTQIYT+V  ++    + 
Sbjct: 233 KRSSLHTSIHPHELRHTFATHLMSNGADLRAVQELLGHSSLSTTQIYTHVTPEH----LQ 288

Query: 312 EIYDQTHPSI 321
             Y +  P  
Sbjct: 289 RDYRKFFPRA 298


>gi|293192780|ref|ZP_06609675.1| tyrosine recombinase XerD [Actinomyces odontolyticus F0309]
 gi|292820027|gb|EFF79025.1| tyrosine recombinase XerD [Actinomyces odontolyticus F0309]
          Length = 315

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 83/318 (26%), Positives = 140/318 (44%), Gaps = 22/318 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L    ++W+  L +E+G S  T+ +Y  D  ++   +    +       +  +S  +I  
Sbjct: 4   LEALVRDWVDYLRVEKGASAHTVSNYRRDVARYAFDMKSRGK-----VNVEDISPRDIED 58

Query: 74  FISKRRTQKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           +  +  + ++        S+ R+ + I+   KY              +   ++   LP+A
Sbjct: 59  YTMRLASGQVTGTPAAASSVARASAAIRGLHKYALTEGAVGTDAAAQLHAPRQGRHLPKA 118

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST- 187
           L+  +   L+D        +   I  R++A+L LLY  G R+SEA+SL+  ++  D    
Sbjct: 119 LSVDEVGRLLD----AAHADDSPIGLRDAALLELLYATGARVSEAVSLSADDLDLDGDVP 174

Query: 188 -LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQ 244
            +R+ GKG K R+VP+      A+  Y       L    +     F   RG  L+     
Sbjct: 175 VVRLFGKGRKERVVPVGSFAVDALYAYRVRARPALAARGRGSTAFFLNSRGGALSRQSAW 234

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             IR+      L    + HTLRHSFATHLL  G  +R +Q +LGH  ++TTQIYT V   
Sbjct: 235 TAIRRAAEAAQLGERVSPHTLRHSFATHLLEGGASVREVQELLGHASVATTQIYTQVT-- 292

Query: 305 NGGDWMMEIYDQTHPSIT 322
                + E++  +HP   
Sbjct: 293 --ATVLREVFTLSHPRAR 308


>gi|254293147|ref|YP_003059170.1| integrase family protein [Hirschia baltica ATCC 49814]
 gi|254041678|gb|ACT58473.1| integrase family protein [Hirschia baltica ATCC 49814]
          Length = 308

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 85/313 (27%), Positives = 143/313 (45%), Gaps = 24/313 (7%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
            +    +L+ +   RG S+ TL +Y  D      FLA           +   +   + A+
Sbjct: 7   FRRVDAFLEMMSASRGASQNTLDAYRRDLSDASEFLADKGG-------LVGANSENLSAY 59

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +    ++ +   +  R LS +KSF K+  +     +     +   +   ++P  L++++ 
Sbjct: 60  MRDLDSRGMAKSTAARRLSSLKSFFKFELEEGEREDDPTSRLDGPQIIRNIPDVLSKEEV 119

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-LRIQGK 193
           + L+     + +   +  D R+  IL LLY  GLR SEA  L   ++   + T L I+GK
Sbjct: 120 VALI-----NAADGDEPSDIRDRCILELLYSAGLRASEACELPMSSLPRGKDTALIIRGK 174

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-----IQLPLFRGI-RGKPLNPGVFQRYI 247
           GDK R+ PL    R A+ +++ +    L  N         +F    +          + +
Sbjct: 175 GDKDRLTPLGKPARDALEQWFSVREKFLPKNETRKIADKYVFPSRGKTGHFTRRRLAQIL 234

Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
             L     + P   T H LRH+FATHLLS G DLR++Q +LGH  +STTQIYT+V     
Sbjct: 235 ENLATKAAISPKRVTPHALRHAFATHLLSGGADLRAVQMLLGHADISTTQIYTHV----M 290

Query: 307 GDWMMEIYDQTHP 319
            D + ++ +  HP
Sbjct: 291 TDELQKLLEAAHP 303


>gi|34223075|sp|Q9KJF6|XERC_STAAU RecName: Full=Tyrosine recombinase xerC
 gi|9622622|gb|AAF89877.1| putative site-specific recombinase XerC [Staphylococcus aureus]
          Length = 298

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 82/309 (26%), Positives = 150/309 (48%), Gaps = 16/309 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +L  L++ER  S+ TL+SY+ D  QF  FL     +      +    Y + R ++S 
Sbjct: 5   QEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLQ------LNTFEYRDARNYLSY 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +   S+ R +S +++  +Y         +  +++ + KK   LP+   E++   L
Sbjct: 59  LYLNHLKRTSVSRKISTLRTLYEYWMTLDENIINPFVHLVHPKKEKYLPQFSLEEEMEAL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                  T  +    + R+  IL LLY  G+R+SE +++  Q+I    + + + GKG K 
Sbjct: 119 F-----TTVEKDTSKNLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R VP     R++I  Y +      + N    L   ++G+ +     +  +  + +     
Sbjct: 174 RFVPFGAYCRQSIENYLEHFKPIQSCNHDF-LILNMKGEAITERGVRYVLNDIVKRTAGV 232

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRH+FATHLL+ G DLR++QS+LGH  LSTT  YT+V+++     + ++Y   
Sbjct: 233 SEIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ----LRKVYLNA 288

Query: 318 HPSITQKDK 326
           HP   ++++
Sbjct: 289 HPRAKKENE 297


>gi|262376584|ref|ZP_06069812.1| tyrosine recombinase XerC [Acinetobacter lwoffii SH145]
 gi|262308294|gb|EEY89429.1| tyrosine recombinase XerC [Acinetobacter lwoffii SH145]
          Length = 305

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 94/307 (30%), Positives = 163/307 (53%), Gaps = 14/307 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+  EI+   SK TLQ+Y  D   FL F             +  +  T++R F++++  
Sbjct: 10  WLKEREIQNQ-SKHTLQAYARDVSDFLEFCQREQ------LNLNDVEATDLRQFLAEKVE 62

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           Q ++   SL+R LS I+ F+K+ ++ +    +   + +  ++S  LP  ++ +    ++D
Sbjct: 63  QHQLSPSSLQRMLSSIRQFMKWAEQAQHLAFNPADDFQLKRQSRPLPGMVDIETVNQIID 122

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                   + + +  R+ AIL LLY  GLR++E  +L  ++I  ++  LRI GKG+K RI
Sbjct: 123 QPAPENEIQQQ-MWLRDKAILELLYSSGLRLAELQNLRIKDIDFNRQLLRITGKGNKTRI 181

Query: 200 VPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP     + +++ +  + P ++ +   +  +F   +G PL     +  ++   +  G+ +
Sbjct: 182 VPFGSKAKASVMAWLQVYPLWNGDFVPEANVFITQKGNPLGARQIENRVKFQAQRAGVNV 241

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRH FA+H+LSN  DLR++Q +LGH  LSTTQIYT+V+     D + +IYDQ H
Sbjct: 242 DLHPHLLRHCFASHMLSNSRDLRAVQEMLGHSNLSTTQIYTHVDF----DHLAQIYDQAH 297

Query: 319 PSITQKD 325
           P    K 
Sbjct: 298 PRAQHKK 304


>gi|154245579|ref|YP_001416537.1| integrase family protein [Xanthobacter autotrophicus Py2]
 gi|154159664|gb|ABS66880.1| integrase family protein [Xanthobacter autotrophicus Py2]
          Length = 354

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 84/350 (24%), Positives = 145/350 (41%), Gaps = 48/350 (13%)

Query: 4   NNLPEIVSFELLKERQN---------WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT 54
           N  PE  + E    R++         +L    IERG    TL +Y  D      FLA   
Sbjct: 9   NGPPEEGAPEKASSRKDLAASGPLALFLDMQAIERGGGPNTLDAYRRDLTDLAEFLA--- 65

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
                  ++ +   + IRA+++    +     ++ R LS ++ F ++L       +    
Sbjct: 66  -----PVSLAEADTSAIRAYLADLSARGFAATTVARRLSALRQFYRFLFAEGHRADDPAA 120

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN------------------ 156
            +   K+   LP+ L+  +   L+D      +   + ++A                    
Sbjct: 121 VLEGPKRGRPLPKVLSVAEVTRLIDTAHARAAQAEESLNAGQGGEGQGEETPGAGAAKAG 180

Query: 157 ----------SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                     + ++ LLY  GLR+SE ++L           + + GKG K R+VPL    
Sbjct: 181 RAELLRLRRVACMVELLYASGLRVSELVALPAAAARAQGEAILVTGKGRKERLVPLSGPA 240

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFR-GIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHT 264
           + A+  +         L     LF  G     +      R +++L    GL P   + H 
Sbjct: 241 KVAMQAFLAAR-RAAGLEASRWLFPSGSESGHVTRQQAARDLKELALAAGLDPAKLSPHV 299

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           LRH+FA+HLL++G DLR +Q++LGH  +STTQIYT+V  +     + +++
Sbjct: 300 LRHAFASHLLAHGADLRVVQTLLGHADVSTTQIYTHVLDERLKSMVRDLH 349


>gi|154508823|ref|ZP_02044465.1| hypothetical protein ACTODO_01333 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798457|gb|EDN80877.1| hypothetical protein ACTODO_01333 [Actinomyces odontolyticus ATCC
           17982]
          Length = 315

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 84/318 (26%), Positives = 141/318 (44%), Gaps = 22/318 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L    ++W+  L +E+G S  T+ +Y  D  ++   +    +       +  +S  +I  
Sbjct: 4   LEALVRDWVDYLRVEKGASAHTVSNYRRDVARYAFDMKSRGK-----VNVEDISPRDIED 58

Query: 74  FISKRRTQKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           +  +  + ++        S+ R+ + I+   KY              +   ++   LP+A
Sbjct: 59  YTMRLASGRVTGTPAAASSVARASAAIRGLHKYALTEGAVGTDAAAQLHAPRQGRHLPKA 118

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST- 187
           L+  +   L+D        +   I  R++A+L LLY  G R+SEA+SL+  ++  D    
Sbjct: 119 LSVDEVGRLLD----AAHADDSPIGLRDAALLELLYATGARVSEAVSLSADDLDLDGDVP 174

Query: 188 -LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQ 244
            +R+ GKG K RIVP+      A+  Y       L    +     F   RG  L+     
Sbjct: 175 VVRLFGKGRKERIVPVGSFAVDALYAYRVRARPALAARGRGSTAFFLNSRGGALSRQSAW 234

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             IR+      L    + HTLRHSFATHLL  G  +R +Q +LGH  ++TTQIYT V + 
Sbjct: 235 TAIRRAAEAAQLGERVSPHTLRHSFATHLLEGGASVREVQELLGHASVATTQIYTQVTAA 294

Query: 305 NGGDWMMEIYDQTHPSIT 322
                + E++  +HP   
Sbjct: 295 ----VLREVFTLSHPRAR 308


>gi|239618321|ref|YP_002941643.1| integrase family protein [Kosmotoga olearia TBF 19.5.1]
 gi|239507152|gb|ACR80639.1| integrase family protein [Kosmotoga olearia TBF 19.5.1]
          Length = 305

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 84/306 (27%), Positives = 144/306 (47%), Gaps = 19/306 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +     + + + LE  R LSK T++SY  D + F  +L  Y+         RQ+   +I 
Sbjct: 2   DFEDAVERFAEYLEFVRNLSKNTVESYTRDLKHFGQYLEEYS------LDYRQVKRRDIE 55

Query: 73  AFISKRR-----TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
            F+ +         ++   S+ R LS +K+F  +L       +     ++  K    +P 
Sbjct: 56  KFMKELSQGNFSDSRLSPSSVARHLSTLKTFYMFLYVSGTVNKIPTDLVKAPKTRRRIPE 115

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS- 186
            ++ ++   +++            +  RN AI+ L+Y CGLR+SE  SLT ++I  +   
Sbjct: 116 YISYEEVQKILEAF------PETHLGKRNRAIVALMYYCGLRVSEVCSLTLRDISLESDP 169

Query: 187 TLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            +R++ GKGDK RIVPL P   + I +Y        + N  + LF GIRG+P+      +
Sbjct: 170 LVRVKSGKGDKDRIVPLTPDAVRIISDYLKHRDRFPDANRHIKLFVGIRGEPITRKSVNK 229

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            ++   + +        H  RHS ATHLL  G  ++ +Q ILGH  +STT IY ++  + 
Sbjct: 230 MLQNHVKKIFPDKHLHPHIFRHSCATHLLQRGASIKIVQEILGHANISTTSIYLHITDRE 289

Query: 306 GGDWMM 311
             + + 
Sbjct: 290 KREAVR 295


>gi|126736338|ref|ZP_01752080.1| tyrosine recombinase XerD [Roseobacter sp. CCS2]
 gi|126714159|gb|EBA11028.1| tyrosine recombinase XerD [Roseobacter sp. CCS2]
          Length = 313

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 83/317 (26%), Positives = 141/317 (44%), Gaps = 23/317 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +  Q +L+    E   +  T  +Y  D + F  +L                S   + +
Sbjct: 8   MARWVQVFLEAQAAELDATTNTQLAYARDLQDFAGWLGPKG------LHFSDASRDHVES 61

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++     + +   +  R LS IK   ++  +     ++  + ++   +   LP+ L+ ++
Sbjct: 62  YLIDCEAEGLAKSTRARRLSAIKQLYRFAFEEGWRDDNPAIQIKGPGREQRLPKTLSIEE 121

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D      +  T     RN+ ++ LLY  G+R++E +SL       D   L ++GK
Sbjct: 122 VDRLLD-----AARNTPKEALRNACLMELLYATGMRVTELVSLPVSAARGDPRMLLVRGK 176

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL------PLFRGI-RGKPLNPGVFQRY 246
           GDK R+VPL P  R A+  Y        +   +        LF    +   L    F   
Sbjct: 177 GDKERLVPLSPPARAALATYLTARDKAEDAGRKDGKPASKFLFPSRGKSGHLTRHRFFGL 236

Query: 247 IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           I++     G+ P   T HTLRH+FATHLL+ G DLRSIQ++LGH  ++TT+IYT+V  + 
Sbjct: 237 IKEFAVAGGVSPAKVTPHTLRHAFATHLLAGGADLRSIQTMLGHADVATTEIYTHVLDER 296

Query: 306 GGDWMMEIYDQTHPSIT 322
               + E+    HP   
Sbjct: 297 ----LKELVLDHHPLAK 309


>gi|163735189|ref|ZP_02142625.1| tyrosine recombinase XerD [Roseobacter litoralis Och 149]
 gi|161391647|gb|EDQ15980.1| tyrosine recombinase XerD [Roseobacter litoralis Och 149]
          Length = 323

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 88/315 (27%), Positives = 142/315 (45%), Gaps = 20/315 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+    E G ++ TL +Y  D + F  FL                +  ++ A++    
Sbjct: 10  AFLEAQAAELGAARNTLLAYGRDLKDFDSFLTHRN------LDFHAAAQADVEAYLIACD 63

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +   +  R LS +K   ++  +    +++  L +    +   LP+ L+E +   L++
Sbjct: 64  AEGLSKATRARRLSAVKQLYRFAFEEGWRSDNPALQITGPGRDRKLPKTLSEAEVDRLLE 123

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                +S       ARN+ ++ LLY  G+R++E +SL       D   L I+GKG K R+
Sbjct: 124 A--ARSSGRNTADRARNTCLMELLYATGMRVTELVSLPVSAARGDPRMLLIRGKGGKERM 181

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-------PLNPGVFQRYIRQLRR 252
           VPL P  R A  E+  L      L                     L    F   I++L  
Sbjct: 182 VPLSPPARDATSEWLRLRDEKEALKKADGHPPSRFLYASRGVSGHLTRNRFYLLIKELAV 241

Query: 253 YLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             G+ P   T HTLRH+FATHLL+NG DLRSIQ++LGH  ++TT+IYT+V        + 
Sbjct: 242 DAGVSPSKVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLEAR----LS 297

Query: 312 EIYDQTHPSITQKDK 326
           E+    HP   +  +
Sbjct: 298 ELVLTHHPLAQEDPR 312


>gi|305664395|ref|YP_003860682.1| putative site-specific recombinase [Maribacter sp. HTCC2170]
 gi|88708412|gb|EAR00648.1| putative site-specific recombinase [Maribacter sp. HTCC2170]
          Length = 297

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 82/306 (26%), Positives = 155/306 (50%), Gaps = 12/306 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q++   L +E+  SK T+ +YE D + F+ F     ++++ +++I  + Y  IR +I  
Sbjct: 3   VQSFTSYLLLEKNYSKHTVNAYEKDIQSFIDFC----DKELKLESINNVEYNIIRNWIVT 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I +RS+ R ++ +K++ K+L++      + +   + LK S  +    +E++   +
Sbjct: 59  LVNTGISNRSVNRKIASLKAYYKFLQRVGSININPLAKHKALKTSKKIEVPFSEEEMQRI 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               LL    E  +  +R+  I+ LLY  G+R SE ++L   ++  +Q ++++ GK +K 
Sbjct: 119 ----LLQLPFEDDFEGSRDKLIIELLYTTGIRRSELINLRTNSVDLNQRSMKVLGKRNKE 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RIVPLL         Y+       N+     +F  I G  +   +  R I+     +   
Sbjct: 175 RIVPLLLPTIDLFEAYFRYRKELENITHDEYIFLTISGNKIYETLVYRIIKGYFSKVSSK 234

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           +  + H LRH+FATHLL+ G DL S++ +LGH  L++TQ+YT+    N    + +++   
Sbjct: 235 VKRSPHILRHTFATHLLNKGADLNSVKELLGHSSLASTQVYTH----NSIAELKKVHSSA 290

Query: 318 HPSITQ 323
           HP   +
Sbjct: 291 HPRGKK 296


>gi|238760177|ref|ZP_04621324.1| Tyrosine recombinase [Yersinia aldovae ATCC 35236]
 gi|238701613|gb|EEP94183.1| Tyrosine recombinase [Yersinia aldovae ATCC 35236]
          Length = 263

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 69/269 (25%), Positives = 134/269 (49%), Gaps = 12/269 (4%)

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
            E++ +   + L   ++R+ +S+ +   +   SL   LS ++SFL ++  + +   +   
Sbjct: 4   GEQMGLAHWQTLDAAQVRSLVSRSKRAGLHASSLALRLSALRSFLDWMVSQGVLQANPAR 63

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            +   +    LP+ ++  +   L+D  L         +  R+ A+L ++YG GLR+SE +
Sbjct: 64  GVSTPRSGRHLPKNIDVDEVDKLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELV 117

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
            +  +++      + + GKG K R +P+  +  K +  + +L   +L       +F    
Sbjct: 118 GMNCKHVDLASGEVWVMGKGSKERKLPIGRTAVKWLAHWLELR--ELFEPQDDAIFLANT 175

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           GK ++    Q+   +     G+      H LRHSFATH+L + GDLR++Q +LGH  L+T
Sbjct: 176 GKRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTT 235

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
           TQIYT+++ ++    +  +YD  HP   +
Sbjct: 236 TQIYTHLDFQH----LATVYDAAHPRAKR 260


>gi|332521253|ref|ZP_08397709.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
 gi|332042981|gb|EGI79179.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
          Length = 296

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 92/306 (30%), Positives = 155/306 (50%), Gaps = 12/306 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + ++  LE+ER  S+LT+++Y  D   F  +L    E      TI+  +Y++IR++I +
Sbjct: 3   LKAFVDYLELERNYSQLTIKAYSKDIEAFQKYLKKNHE----TTTIKTANYSQIRSWIVQ 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
               KI +R++ R +S + ++ K+L K +    + +   + LK S  +    ++ +    
Sbjct: 59  LVESKISNRTINRKISALNTYYKFLLKIEQLKTNPLAKHKALKTSKKIQVPFSQTEVAMA 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D       HE  +   RN  I+ L Y  G+R  E ++L  ++I     TL++ GK +K 
Sbjct: 119 ID----DLQHENNFKGLRNKLIIELFYSTGIRRIELVNLKIKDINQANKTLKVLGKRNKE 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R VPLL SV K I +Y +      N+  Q  LF   RG  +   +  R I +        
Sbjct: 175 RYVPLLDSVNKTINQYIEKRQELKNIKDQEYLFLTKRGVKIYETLVYRIINEYFSLASNK 234

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           +  + H LRHSFATHLL+ G DL +++ +LGH  L+ TQ+YT+    N    + E+Y + 
Sbjct: 235 VKKSPHILRHSFATHLLNQGADLNAVKELLGHSSLAATQVYTH----NSIAQLKEVYLKA 290

Query: 318 HPSITQ 323
           HP   +
Sbjct: 291 HPRSKK 296


>gi|306836381|ref|ZP_07469359.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726]
 gi|304567741|gb|EFM43328.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726]
          Length = 305

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 81/309 (26%), Positives = 143/309 (46%), Gaps = 19/309 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ++ +  +++       +G ++ T++ Y  D +               I T    +   +R
Sbjct: 16  QMDEAIEDFADFQLHVKGRAEATVRGYRADLKNLAQ----------EIDTFADFNLNNLR 65

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            ++     +     +L R  + +K+F  + ++ +  T      +   K    LP  +  +
Sbjct: 66  QWLGNAVAEGKARATLARRTASVKAFSTWAERERYLTRDVAARLVTPKVGQHLPTVMAPQ 125

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           QA  LV N         +    R+SAIL LLY  G+R++E + L  +++   +ST R+ G
Sbjct: 126 QAGELVGN----AVSVDEAHFQRDSAILELLYATGMRVAELVRLDLEDVDFKRSTARVTG 181

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG+K R+VP   +   A+ ++ D    ++       +F G RG  ++    +R + +   
Sbjct: 182 KGNKQRVVPFGAAATDALQQWIDGGRKEMARGETQAIFVGSRGARIDQRQVRRIVDKAAT 241

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G     T H +RH  ATHLL  G DLR +Q +LGH  LSTTQIYT+V++K     + +
Sbjct: 242 VTG-TSGLTPHGVRHLAATHLLEGGADLRVVQELLGHSSLSTTQIYTHVSAKR----LKQ 296

Query: 313 IYDQTHPSI 321
           +Y Q HP  
Sbjct: 297 VYSQAHPRA 305


>gi|163736279|ref|ZP_02143698.1| phage integrase [Phaeobacter gallaeciensis BS107]
 gi|161390149|gb|EDQ14499.1| phage integrase [Phaeobacter gallaeciensis BS107]
          Length = 337

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 80/317 (25%), Positives = 140/317 (44%), Gaps = 20/317 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+    +L     + G ++ TL +Y  D +    +L          +     +  +I ++
Sbjct: 16  LQWIATFLDAQAADLGAARNTLLAYGRDLKDVASWLGHKN------RAFGSATRDDIESY 69

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +     + +   +  R LS IK   ++       +++  + ++   +  +LP+ L   + 
Sbjct: 70  LIACDAEGLARATRARRLSAIKQIYRFAFDEGWRSDNPAIQIKGPGRQKALPKTLEVIEV 129

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D       + +  +  RN+ ++ LLY  G+R+SE + L       D   L + GKG
Sbjct: 130 DRLLDAARQSGRNLSDRL--RNTCMMELLYATGMRVSELVGLPVAAARGDPRMLLVLGKG 187

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFD------LNLNIQLPLFRGI-RGKPLNPGVFQRYI 247
            K R+VPL P  R A+  +                     LF    +   L    F   I
Sbjct: 188 GKERMVPLSPPARDALAAWLTTRDAAEEAAVAKGAAPSRFLFPSRGKSGHLTRHRFYLLI 247

Query: 248 RQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           ++     GLP    + HTLRH+FATHLL+NG DLR+IQ++LGH  ++TT+IYT+V     
Sbjct: 248 KEFAVAGGLPPEAVSPHTLRHAFATHLLTNGADLRAIQALLGHADIATTEIYTHVLDAR- 306

Query: 307 GDWMMEIYDQTHPSITQ 323
              + E+  + HP   +
Sbjct: 307 ---LSELVLEHHPLARK 320


>gi|91204992|ref|YP_537347.1| site-specific tyrosine recombinase XerC [Rickettsia bellii
           RML369-C]
 gi|122990944|sp|Q1RK56|XERC_RICBR RecName: Full=Tyrosine recombinase xerC
 gi|91068536|gb|ABE04258.1| Tyrosine recombinase XerC [Rickettsia bellii RML369-C]
          Length = 305

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 116/311 (37%), Positives = 184/311 (59%), Gaps = 9/311 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++  ++ +    W + L +++  S  TL SY  D + FL F+ +Y  + +T+  I+    
Sbjct: 1   MLDTQIQELIIKWQKYLSLQKNYSNHTLISYNNDLKHFLEFMNYYNSDIVTMDYIKAADI 60

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R++++KR+       S+ R LS IK+F K+L+K        + ++++ KKS  LP+A
Sbjct: 61  RLMRSWLAKRKCDNFVTSSIARGLSAIKNFYKFLEKTAELHNHVVFSIKSPKKSKLLPKA 120

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+E++    +D+  +     ++WI+ RN A+L L+Y  GLRISEALS+T  + + +   +
Sbjct: 121 LSEEEVNISLDH--IEEYGNSQWIEIRNKALLVLIYASGLRISEALSITKLH-LQNLEFI 177

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           +I GKG K R++P L   R  I EY +  P++L  +   P+FRG +GK L P VF R + 
Sbjct: 178 KIMGKGSKERVIPWLAIARNLITEYLEKLPYELKDDE--PIFRGKQGKKLQPPVFNRELI 235

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L+R+ GLP   +AH+ RHSFA+HLL NG DLRSIQ +LGH  LSTTQ YT  + K+   
Sbjct: 236 KLKRFYGLPEYLSAHSFRHSFASHLLENGADLRSIQELLGHKSLSTTQSYTKTSIKH--- 292

Query: 309 WMMEIYDQTHP 319
            +   Y   HP
Sbjct: 293 -LETAYVTAHP 302


>gi|223938788|ref|ZP_03630676.1| integrase family protein [bacterium Ellin514]
 gi|223892486|gb|EEF58959.1| integrase family protein [bacterium Ellin514]
          Length = 306

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 82/315 (26%), Positives = 151/315 (47%), Gaps = 26/315 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++LQ L  ERG S+ T ++Y     +FL +          +   +++    + AF+  
Sbjct: 5   VEDFLQYLRHERGQSEHTQKTYAALLGKFLNWAQIQK-----LTDWKEVELKHLTAFLMF 59

Query: 78  RRTQ-----------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
            R +           K+   S+   ++ +++F K+ +  KI   +   ++   ++   LP
Sbjct: 60  ERERLVEVKEGQSPRKLSSESVYLEIAALRAFYKFAENEKILPLNIAESLSLPRRWKRLP 119

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           +AL++ +   L+   +  T          + A+L L Y  GLR++E  ++  + +  +  
Sbjct: 120 KALSDLEITQLLTLEIPETPRT-----LGDQAVLELAYASGLRLAELRNIRMEQLHLEVG 174

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQR 245
            + + GKG+K R+VP+     +A+  Y +     L        +F  +RG P       +
Sbjct: 175 FINVIGKGNKERVVPVGSKAVQALQRYLESGRPKLVTPRSPANVFLTMRGTPFAAVTLWK 234

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            I+   +  G+  + T H LRHSFATHLL +G DLR IQ +LGH  +STT+IYT+V+   
Sbjct: 235 RIKDRVKRSGVARNVTPHMLRHSFATHLLEHGADLRVIQELLGHANISTTEIYTHVS--- 291

Query: 306 GGDWMMEIYDQTHPS 320
            G  + E++ + HP 
Sbjct: 292 -GSRLREVHRKFHPR 305


>gi|157803898|ref|YP_001492447.1| site-specific tyrosine recombinase XerD [Rickettsia canadensis str.
           McKiel]
 gi|157785161|gb|ABV73662.1| tyrosine recombinase [Rickettsia canadensis str. McKiel]
          Length = 308

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 91/316 (28%), Positives = 152/316 (48%), Gaps = 26/316 (8%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ++    +L+ L  ER LSK ++ SY+ D   F  +LA     ++ I      +   IR +
Sbjct: 1   MEFISQFLEMLLAERALSKNSIFSYKRDLFDFQNYLAKQKLSELNI------TTENIRNW 54

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I       +  RS+ R +S IKS+ ++L     T  + +LN+   K  + LP  L+  Q 
Sbjct: 55  IEYLADNDLQARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPKYQSKLPEILSIDQI 114

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ------STL 188
            +L++      + E   ++    A+++LLY  GLR+SE +SL   +I+ ++         
Sbjct: 115 KSLLEYCSQDATPEGIRLN----AMIHLLYASGLRVSELVSLKLADILTNKMSGEVKKVF 170

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIRGK-PLNPGVFQ 244
            + GKG+K R++ +      +I++Y  +    LN       + LF        +    F 
Sbjct: 171 SVLGKGNKERVIIINEQAVISIVKYLAIRDVFLNKAKPKNLIYLFPSSAIAGYMTRQNFA 230

Query: 245 RYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             ++    Y GL P   + H LRHSFA+HLL  G DLR IQ +LGH  +STTQIYT++ +
Sbjct: 231 MLLKSAALYAGLNPKHISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQT 290

Query: 304 KNGGDWMMEIYDQTHP 319
            +    ++      HP
Sbjct: 291 NHLQKALL-----HHP 301


>gi|183981830|ref|YP_001850121.1| integrase/recombinase XerC [Mycobacterium marinum M]
 gi|183175156|gb|ACC40266.1| integrase/recombinase XerC [Mycobacterium marinum M]
          Length = 302

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 134/305 (43%), Gaps = 12/305 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + + L ++ G S  T ++Y  D R  L +LA           +R LS   +R++++ 
Sbjct: 9   LEEFDEYLALQCGRSAHTRRAYLGDLRSLLDYLAGRG------ADLRALSLPVLRSWLAT 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    +L R  S +K+F  +  +R +        ++  K   +LP  L + QAL  
Sbjct: 63  AAGAGAARTTLARRTSAVKAFTAWAVRRGLLATDPAARLQVPKAHRTLPAVLRQDQALAA 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +         +   +  R+  I+ LLY  G+R+SE   L   ++      +R+ GKG+K 
Sbjct: 123 MTAAKSGA-QQGDPLALRDRLIVELLYATGIRVSELCGLDIDDVDTGHRLVRVLGKGNKQ 181

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R  P      +A+  +       L      P L  G RG+ L+    +  + Q    +  
Sbjct: 182 RTAPFGQPAAEALQAWLADGRPALATAESGPALLLGARGRRLDVRQARTVVHQTVAAVDG 241

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V        +  ++DQ
Sbjct: 242 APDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHV----AVSRLRAVHDQ 297

Query: 317 THPSI 321
            HP  
Sbjct: 298 AHPRA 302


>gi|58337280|ref|YP_193865.1| integrase-recombinase [Lactobacillus acidophilus NCFM]
 gi|227903866|ref|ZP_04021671.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796]
 gi|58254597|gb|AAV42834.1| integrase-recombinase [Lactobacillus acidophilus NCFM]
 gi|227868257|gb|EEJ75678.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796]
          Length = 302

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 85/309 (27%), Positives = 143/309 (46%), Gaps = 14/309 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            E   ++  L+ ER  S  T+ SY+ D  +   FL     E       + ++  +I+ ++
Sbjct: 6   DELTLFISYLQNERHYSSKTIASYKTDLLEVEKFLK----ENGGYNGWKNITERDIQLYL 61

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                +K+   S  R +S + SF ++L +RKI        +   +    LP    E +  
Sbjct: 62  QHLSDRKLARSSQLRQMSSLHSFYRFLTRRKIVQVDPTQQITLRRGEKKLPEFFYEPEIK 121

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            + D++        K +  RN A+  L Y  G+R+SE  SLT   I     T+ + GKG 
Sbjct: 122 QVFDSL-----SGDKPLTVRNLALFQLFYATGMRVSEVSSLTLNQIDLTMQTILVHGKGK 176

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K R V      ++++ +Y ++    L  N   P +F    GKP++    Q  +++     
Sbjct: 177 KDRYVAFDDKTKRSLTKYLEIARPKLLKNEDEPHVFLSNLGKPISNRGIQYVMQKTFNQA 236

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+      H LRH+FAT +++NG DLRS+Q +LGH  LS TQIYT+V   +    +   Y
Sbjct: 237 GISGKVHPHELRHTFATAMINNGADLRSVQELLGHSSLSATQIYTHVTMAH----LKSDY 292

Query: 315 DQTHPSITQ 323
           ++  P   +
Sbjct: 293 EKYFPRNKE 301


>gi|218288287|ref|ZP_03492586.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218241646|gb|EED08819.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 307

 Score =  232 bits (591), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 84/308 (27%), Positives = 143/308 (46%), Gaps = 19/308 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
              + +L +  +    S  T++SY  D   F  +L     +   +  +  LS  ++R   
Sbjct: 7   DAVKAFLDDAAL--RFSPRTVRSYGQDLEAFRQWL-----DDRGVYDLDALSTRDVRMHA 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           S    +     S+ R LS +++FL++  +R    +    N+R  K+   LPR L+E++  
Sbjct: 60  SDLLAKGAAKSSVARRLSCLRTFLRFCAERGWVRQVMAENVRLPKRDRRLPRYLHEEEVA 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+D+V         ++  R+ A+L  LY  G+R+SE ++L   ++       R+ GKG 
Sbjct: 120 ALIDHV-----GGDDFVALRDRALLEFLYATGVRVSECVNLDVGDLDLSTGFARVLGKGG 174

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           + R V +      A+  Y  L      +     +F   RG  L     +R + +  + + 
Sbjct: 175 RERYVIVGRRAVDALRRYLPLRDR---MARCSAVFINRRGGRLTDRSVRRVLERRIQEVP 231

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
              S   H LRHSFATH+L+ G DLRS+Q +LGH  LS+TQIYT+ + +     +   Y 
Sbjct: 232 GLRSIHVHGLRHSFATHMLNGGADLRSVQELLGHASLSSTQIYTHTSREQ----LARAYY 287

Query: 316 QTHPSITQ 323
             HP   +
Sbjct: 288 AAHPRARR 295


>gi|269961534|ref|ZP_06175897.1| tyrosine recombinase XerC [Vibrio harveyi 1DA3]
 gi|269833763|gb|EEZ87859.1| tyrosine recombinase XerC [Vibrio harveyi 1DA3]
          Length = 269

 Score =  232 bits (591), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 71/275 (25%), Positives = 137/275 (49%), Gaps = 11/275 (4%)

Query: 53  YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
           +   ++ ++   Q+    +R    K   + +   SL   LS ++SF  +L  R   + + 
Sbjct: 3   HHLAEMGLKDWSQVDAGWVRQLAGKGMREGMKASSLATRLSSLRSFFDFLILRGEMSANP 62

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
              +   +K   LP+ L+  +   L++       +E   +  R+ A++ L+YG GLR++E
Sbjct: 63  AKGVSAPRKKRPLPKNLDVDEVNQLLEV------NEDDPLAVRDRAMMELMYGAGLRLAE 116

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
            +S+  +++      LR+ GKGDK R VP      + + ++  +   DL    +  LF  
Sbjct: 117 LVSVDVRDVQLRSGELRVIGKGDKERKVPFSGMATEWVGKWLRVR-GDLAAPGEPALFVS 175

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
             G  ++    Q+ + +  +   +    + H LRHSFATH+L +  +LR++Q +LGH  +
Sbjct: 176 KLGTRISHRSVQKRMAEWGQKQSVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENI 235

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
           STTQIYT+++ ++    + + YDQ HP   +++  
Sbjct: 236 STTQIYTHLDFQH----LAQAYDQAHPRARKRNDD 266


>gi|160877191|ref|YP_001556507.1| tyrosine recombinase XerC [Shewanella baltica OS195]
 gi|160862713|gb|ABX51247.1| tyrosine recombinase XerC [Shewanella baltica OS195]
 gi|315269395|gb|ADT96248.1| tyrosine recombinase XerC [Shewanella baltica OS678]
          Length = 306

 Score =  232 bits (591), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 81/312 (25%), Positives = 147/312 (47%), Gaps = 19/312 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  Q + + L  ER LS  T+++Y  +  +    L            +  +S    +  +
Sbjct: 14  QWLQTFERYLSTERQLSAHTVRNYLYELNRGSDLL-------PDGVHLLNVSREHWQQVL 66

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +K   + +  RSL   LS +K + ++L +  +   +    +   K++  LP+ ++     
Sbjct: 67  AKLHRKGLSPRSLSLCLSAVKQWGEFLLRESVIELNPAKGLSAPKQAKPLPKNIDVDAIS 126

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+D         T  +  R+ A++ L Y  GLR++E  +L   ++  D   +R+ GKG+
Sbjct: 127 HLLDI------EGTDPLSLRDKAMMELFYSSGLRLAELAALNLSSVQYDLKEVRVLGKGN 180

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RIVP+      A+L + +        +    LF   +GK L+    Q  + +  +   
Sbjct: 181 KERIVPVGRLAIAALLNWLNCRKQIPCEDN--ALFVTEKGKRLSHRSIQARMAKWGQEQA 238

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L +    H LRHSFATH+L    DLR++Q +LGH  L+TTQIYT+++ ++    + ++YD
Sbjct: 239 LSVRVHPHKLRHSFATHMLEASADLRAVQELLGHANLATTQIYTSLDFQH----LAKVYD 294

Query: 316 QTHPSITQKDKK 327
             HP   +   K
Sbjct: 295 NAHPRAKKTQDK 306


>gi|313158817|gb|EFR58200.1| phage integrase, N-terminal SAM domain protein [Alistipes sp. HGB5]
          Length = 300

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 157/305 (51%), Gaps = 13/305 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +++ L  ER  S LT+++Y+ D  QFL +L        +    R ++  +IR +I  R 
Sbjct: 4   EFIRYLSAERRYSPLTVRNYKHDVEQFLAWLDC----DESRFDPRSVTTEQIREWIIFRT 59

Query: 80  TQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            +  +   S+ R ++ +++F ++L +     +     +  LK S  LP  + E +  T+V
Sbjct: 60  EEGKLSAGSMNREVASLRAFFRWLHRTGAVEKDIFRMISTLKTSRRLPAFVPESRMTTIV 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                       +   RNS I+ + Y CGLR++E + +   +   D ++LR++GKGDK R
Sbjct: 120 SEC---GPDSEDFQTERNSLIILMFYACGLRLAELVGIDRSDFSADYTSLRVRGKGDKQR 176

Query: 199 IVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+L  +R+ IL Y  L     + ++ +  LF   +GK ++  V  R +++     G+ 
Sbjct: 177 MVPILEFLREKILHYLGLIERQNICISSEKALFLTHKGKRISRSVVYRTVQEELTRAGVQ 236

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FATHLL+ G D+R IQ +LGH  L  TQ+YT+    N    + EIY + 
Sbjct: 237 GKKSPHVLRHTFATHLLNGGADMREIQELLGHASLQATQVYTH----NSIARLREIYAKA 292

Query: 318 HPSIT 322
           HP   
Sbjct: 293 HPREK 297


>gi|114771054|ref|ZP_01448494.1| tyrosine recombinase XerD [alpha proteobacterium HTCC2255]
 gi|114548336|gb|EAU51222.1| tyrosine recombinase XerD [alpha proteobacterium HTCC2255]
          Length = 308

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 89/311 (28%), Positives = 147/311 (47%), Gaps = 16/311 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K   N+L+ +  ER  SK TL +Y+ D   F  FL+           + + +  +I  +I
Sbjct: 6   KLIDNFLETIHAERNASKNTLLAYKRDLEAFTRFLSKKRI------DLYKANRKDIENYI 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                  + + +  R LS IK   +Y     +  ++    ++  K    LP  L+E +  
Sbjct: 60  ISLDNHGMSESTRARHLSTIKQIYRYGYDESLIKDNPSNEIKGPKSKRKLPNYLSENEIN 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+D         +     RN+ ++++LY  G+R+SE +SL   ++  +   L I+GKG 
Sbjct: 120 KLLDTS--TQIGRSPRDKKRNTCLMHVLYATGMRVSELVSLPVISVRGNPEMLLIKGKGG 177

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL------PLFRGI-RGKPLNPGVFQRYIR 248
           K R+VPL    + AI  Y         +N +        LF    +   +    F  +I+
Sbjct: 178 KERLVPLSTPAKMAIAAYLVDWNSQQEINKKKGLQESKFLFPSHSKLGHITRVRFYVFIK 237

Query: 249 QLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +L    G+ P   + HTLRH+FA+HLL+NG DLR IQ +LGH  ++TT+IYT+V  +N  
Sbjct: 238 ELCIKAGISPNKVSPHTLRHAFASHLLANGADLRVIQMLLGHADVATTEIYTHVLDENIK 297

Query: 308 DWMMEIYDQTH 318
             + E +   H
Sbjct: 298 SLVFEHHPLAH 308


>gi|332828179|gb|EGK00891.1| hypothetical protein HMPREF9455_02680 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 294

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 147/304 (48%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              + + L  E+  S  T  SY  D  QF+ FL  +  E      ++ +    IR +I  
Sbjct: 4   IDKYSRYLRYEKNFSLHTEISYSTDLHQFVGFLQEHFPE----IDVKNVDSDIIRMWIVS 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
               KI  RS+ R LS +KSF KYL +    + + +  +   K    +P  +N      +
Sbjct: 60  LMEAKIAARSVNRKLSTLKSFYKYLLRIGEVSVNPVKKITGPKTPKPIPSFVNNGDMEKV 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++     ++ +  +   RN  ++ L Y  G+R +E + L   ++     T+++ GK +K 
Sbjct: 120 LE----ESNFDNTFESLRNHIMIELFYVTGIRRAELIGLKDVDVDFSAETIQVTGKRNKQ 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R++P    ++  + EY +    ++  N+   LF    G+ L P +  R + +  + +   
Sbjct: 176 RLIPFSDGMKAMLEEYLNARNEEIG-NLSGYLFVKNDGQQLYPMLVHRIVTENLKQIPTL 234

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
             T+ H LRHSFAT +L+NG D+ +++ +LGH  L+ T+IYT+ + +     + +IY++ 
Sbjct: 235 SKTSPHVLRHSFATGMLNNGADINAVKELLGHSSLAATEIYTHTSFEE----LKKIYNKA 290

Query: 318 HPSI 321
           HP  
Sbjct: 291 HPRA 294


>gi|295396788|ref|ZP_06806923.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030]
 gi|294970372|gb|EFG46312.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030]
          Length = 312

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 83/317 (26%), Positives = 143/317 (45%), Gaps = 15/317 (4%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP+  + +L++    +L  L++ERG S+ T+ +Y  D  +++ +LA        +  +  
Sbjct: 11  LPDAPA-DLIRPVSEYLTYLQLERGSSRNTVDAYARDLAKYVTYLA-----DTGVNDLGS 64

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           ++   +  FI     Q     S  R    ++    +       T S   +++    +  L
Sbjct: 65  VTSEHVAGFIEHIAHQNFAVTSRARITVAVRRLHHFTAGETGGT-SPADDVQPPTDTMRL 123

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P+AL+  Q   ++                R  A++  LY  G RISEA+ +   ++  D 
Sbjct: 124 PKALSVDQVSRII--HAAGDPQSADPAQLRAVALIEFLYATGARISEAVGVDRDDVDVDA 181

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
              R+ GKG+K R+VPL     +A+  +          +    +F   RG  L+      
Sbjct: 182 GIARVYGKGNKERLVPLGSHAIEALGAWLTRGRPAWAAS-SPAVFLNARGGRLSRQSAWA 240

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +++      +P   TAH+LRHS ATHL+  G D+R +Q +LGH  ++TTQIYT V S+ 
Sbjct: 241 IVKKAAEIADVPR-VTAHSLRHSCATHLVEGGADIRIVQELLGHSSVTTTQIYTQVTSQ- 298

Query: 306 GGDWMMEIYDQTHPSIT 322
               + E+Y  THP   
Sbjct: 299 ---ALKEVYASTHPRAR 312


>gi|227890941|ref|ZP_04008746.1| site-specific recombinase XerD [Lactobacillus salivarius ATCC
           11741]
 gi|227867350|gb|EEJ74771.1| site-specific recombinase XerD [Lactobacillus salivarius ATCC
           11741]
          Length = 298

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 88/310 (28%), Positives = 155/310 (50%), Gaps = 17/310 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + + + L IE+  S  TL++Y  D + F+ F+    +E    ++ +++   ++ A+
Sbjct: 3   LTWIEEFKKYLLIEKQYSDETLKAYSEDLQHFVDFI----DETGGAKSFKEIGSNDVHAY 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +S    +     S+ R +S +++F  +L K ++T E+    ++  +   SLPR   EK+ 
Sbjct: 59  MSYLYDR-YEMTSISRMISSLRAFYNFLIKNELTDENPFAYVQLKRHPRSLPRFFYEKEM 117

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L +      +     +  R+ A+L  LYG G+R+SE   L  +++      + + GKG
Sbjct: 118 TALFE-----ATEGDTQMLIRDRALLESLYGTGMRVSECTGLKMESVDLTNKKMLLHGKG 172

Query: 195 DKIRIVPLLPSVRKAILEYYDLCP---FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           DK R+VP     ++A+  Y++       +        +F    G PL P      ++Q+ 
Sbjct: 173 DKDRLVPFGSYCQEALQRYFEQTRTPLMEKYHRDHDLVFVNHYGNPLTPAGVAYILKQIV 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +   L  S   H LRH+FATHL+SNG DLR++Q +LGH  LSTTQIYT+V  ++    + 
Sbjct: 233 KRSSLHTSIHPHELRHTFATHLMSNGADLRAVQELLGHSSLSTTQIYTHVTPEH----LQ 288

Query: 312 EIYDQTHPSI 321
             Y +  P  
Sbjct: 289 RDYRKFFPRA 298


>gi|260885407|ref|ZP_05896922.1| integrase/recombinase XerC [Prevotella tannerae ATCC 51259]
 gi|260852293|gb|EEX72162.1| integrase/recombinase XerC [Prevotella tannerae ATCC 51259]
          Length = 299

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 87/303 (28%), Positives = 145/303 (47%), Gaps = 13/303 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L  L  ++G S LT+  Y      F  F   Y  ++ T+ T + +    +R +I  R
Sbjct: 10  QRFLSYLASDKGYSPLTIMKYRDVLEGFEAF---YISQEATL-TWQTIDADLVRRWIVWR 65

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               I  R+++R LS ++SF +YL    +  +  +  ++N K +  LP  + + +   L 
Sbjct: 66  MDDGIVGRTVRRDLSALRSFYRYLLVLGLIEKDPMCFVKNPKSAQPLPAFVRQSEMDRLF 125

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D     T     +   R+  IL   Y  G+R +E L++   +I   +  +R+ GK +K R
Sbjct: 126 D----KTHFPETFEGQRDYLILLTFYSTGVRRAELLAMQWVDIDLSRCEVRVTGKRNKQR 181

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           I+P    + +A   YY     DL  ++  PLF    G+PL P    R +      +    
Sbjct: 182 IIPFGAELAEAFQAYYAARM-DLVKHMSGPLFIQSNGRPLQPTQVGRIVHDYLSLVTNIK 240

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRHSFAT +L+NG DL +++ +LGH  L+TT IYT+V  +     +++ Y   H
Sbjct: 241 KRSPHVLRHSFATAMLNNGADLMAVKELLGHSNLNTTAIYTHVTPEE----LLKEYKHAH 296

Query: 319 PSI 321
           P  
Sbjct: 297 PRA 299


>gi|240851370|ref|YP_002972773.1| integrase /recombinase xerD [Bartonella grahamii as4aup]
 gi|240268493|gb|ACS52081.1| integrase /recombinase xerD [Bartonella grahamii as4aup]
          Length = 312

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 80/316 (25%), Positives = 147/316 (46%), Gaps = 16/316 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             ++L+ +  ERG S  TL +Y+ D +     L+ ++    + Q        ++ A +S 
Sbjct: 7   IDHFLEMMSAERGASPHTLAAYQHDLQWAQDELSSHSVSLFSAQ------KEDLIALLSL 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             T      S  R LS ++ F ++L    +  +    ++   ++   LP+ ++E   + L
Sbjct: 61  MHTFGFAASSQARRLSTLRQFYQFLYAEGLRADDPSHDIDAPRQGRPLPKIMSEDAVIKL 120

Query: 138 VDNVLLHTSHETKWIDARNSAIL-----YLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +D   L  +           A+       +LY  GLRISE +SL  Q +     ++ ++G
Sbjct: 121 LDLAQLEVNQADYGSKDYLRALRLQLLSEMLYATGLRISELVSLPVQAVRGKAYSILVRG 180

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R+V L     + +L++ +L     ++              +   V  R ++ L R
Sbjct: 181 KGKKERMVLLSKKAYQVLLQWLNLRDQGKDVASPYLFPANSETGYIARQVVARELKNLAR 240

Query: 253 YLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             G+   S + H LRH+FA+HLL NG DLR++Q +LGH  ++TTQIYT+V  +     + 
Sbjct: 241 RAGIESDSFSPHVLRHAFASHLLQNGADLRAVQHLLGHSDIATTQIYTHVLEE----GLY 296

Query: 312 EIYDQTHPSITQKDKK 327
            + ++ HP   ++  +
Sbjct: 297 RLVNEHHPLADEQKAR 312


>gi|229820647|ref|YP_002882173.1| tyrosine recombinase XerD [Beutenbergia cavernae DSM 12333]
 gi|229566560|gb|ACQ80411.1| tyrosine recombinase XerD [Beutenbergia cavernae DSM 12333]
          Length = 311

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 91/316 (28%), Positives = 152/316 (48%), Gaps = 22/316 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           ++ +++L +L +ERGLS  TL +Y  D  ++  +L      +     +  +   ++ A++
Sbjct: 8   RDLEDYLAHLGVERGLSPHTLAAYRRDLSRYAAYLGALGRAR-----LSDVRPADVDAYV 62

Query: 76  SKRRTQKIG-----DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
              RT   G       S  R++  ++ + ++     I      +++R    +  LP+A+ 
Sbjct: 63  EALRTGSDGGSALSASSASRAVVAVRGWHRFAMLEGIAPSDPAVDVRPPSTTKRLPKAIA 122

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ--STL 188
            +    L    L+  S        R+ A+L LLYG G RI+EA SL   +I  D    ++
Sbjct: 123 VEDVERL----LVAASAGDGPGPLRDRALLELLYGTGARITEATSLAVDDIDLDDDAGSV 178

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN--LNIQLPLFRGIRGKPLNPGVFQRY 246
           R+ GKG + R+VPL    R A+  Y       L         LF G+RG+PL+       
Sbjct: 179 RLFGKGRRERVVPLGRFARDAVDAYLVRARPVLAQAGTGTPALFLGMRGRPLSRQSAWAI 238

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           ++   R   L    + HTLRHS+ATHLL+ G D+R +Q +LGH  ++TTQ+YT V ++  
Sbjct: 239 LQSAARRADLEEHVSPHTLRHSYATHLLAGGADVRVVQELLGHASVTTTQLYTLVTAQT- 297

Query: 307 GDWMMEIYDQTHPSIT 322
              + E+Y   HP   
Sbjct: 298 ---LREVYAAAHPRAR 310


>gi|227495065|ref|ZP_03925381.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436]
 gi|226831517|gb|EEH63900.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436]
          Length = 302

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 89/313 (28%), Positives = 149/313 (47%), Gaps = 15/313 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            +  LLK+   WL++    RG S  T ++YE D +  L +   +  +  T       +  
Sbjct: 4   TNLALLKDFTTWLEHF---RGFSTHTQRAYENDVKAALEYC--FGNDPFTPIDF---NSQ 55

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R+F+S R  +     S+ R  + ++ F  +  K+        L ++  K  N LP+ L
Sbjct: 56  ALRSFLSNRIRKGHARASVARYAASLRLFSSWALKQGHLNSDPSLKLKTAKVDNHLPQVL 115

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           + +Q   L  N L+ T+        R+ A   LLY CG+R++E + L   ++     TLR
Sbjct: 116 SLEQINQLF-NHLVETAQTGNVNAIRDWATSELLYSCGIRVAELVGLNLTSVDGSNRTLR 174

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           + GKG+K R+VP      +++  +       L N      LF G RG  ++  + +  + 
Sbjct: 175 VIGKGNKERLVPFGTPALESLRAWVTQGRPQLVNERSGQALFLGSRGGRIDQRIVRECLE 234

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     G+P+  + H LRH  ATH+L  G DLR++Q +LGH  L+TTQ YT+V++    +
Sbjct: 235 KACVQAGVPV-LSPHGLRHCAATHMLEGGADLRTVQDMLGHASLATTQRYTHVDAVRLSN 293

Query: 309 WMMEIYDQTHPSI 321
            M     Q HP  
Sbjct: 294 IMR----QAHPRA 302


>gi|134301812|ref|YP_001121780.1| phage integrase family protein [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049589|gb|ABO46660.1| phage integrase family protein [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 292

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 86/310 (27%), Positives = 153/310 (49%), Gaps = 21/310 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+   N+L NL   +  S+ T+ +Y+ D  Q          + ++ + I  L++++I  +
Sbjct: 4   LEHINNFLDNLLYLKNYSQETINNYQRDLLQL--------NQALSDKNIISLTHSDILIW 55

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I K   Q    ++L+R LS ++SF  +L   +I +++    ++  K S  LP+ +N  + 
Sbjct: 56  IKKLHAQGNSPKTLQRKLSSVRSFFNFLINSEIISQNPANGIKAPKDSKRLPKVVNTDEL 115

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D       + +  I+AR+ A   LLY CG+R+SE  S+  ++I   Q  +R+ GKG
Sbjct: 116 AYLLDI------NPSNDIEARDIACFDLLYSCGIRLSELSSVELKDISISQKNIRVTGKG 169

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +K RIV         +  +  +   D        LF    GK L     Q+ +    +  
Sbjct: 170 NKQRIVYFGTKTLSNLNRWLKIR--DSLKPSSDYLFISRDGKHLTNRSIQKRLEIFAQKY 227

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
                   H LRHSFA+H+L +  DL +++ +LGH  +S+TQIYT++N +     +  ++
Sbjct: 228 A-SRHIHPHMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQ----LASVF 282

Query: 315 DQTHPSITQK 324
           D+ HP   +K
Sbjct: 283 DKAHPRAKKK 292


>gi|218283546|ref|ZP_03489536.1| hypothetical protein EUBIFOR_02126 [Eubacterium biforme DSM 3989]
 gi|218215814|gb|EEC89352.1| hypothetical protein EUBIFOR_02126 [Eubacterium biforme DSM 3989]
          Length = 291

 Score =  232 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 86/309 (27%), Positives = 150/309 (48%), Gaps = 18/309 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +  + +L+ +  +   S+ T++SY+ D  QF  +L        +I +           
Sbjct: 1   MDELIERFLKYIYRKNTQSEKTIESYKNDLNQFKEYLTSQ-----SIDSFESCDRLTFMN 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F++      +   S+ R +S  +SF  YL +     E+ ++ ++  KKS  +P  L  ++
Sbjct: 56  FLATL--DHLKASSIARKMSVYRSFYTYLAEYMGIIENPLIGIQTPKKSKQIPDFLFVEE 113

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
               +++       E      R+  +  ++Y CGLR+SE ++L  + I  +   + I+GK
Sbjct: 114 IQEFLNSYNDEKDDE-----YRDRILFTIMYACGLRVSECVNLEWKQIDLNNRIVHIRGK 168

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GDK RIVP      K +LEY         ++    +F  ++GK L+    Q  + +    
Sbjct: 169 GDKDRIVPFYQGFEKELLEYKSKFWTKYAIDDH--VFVNLKGKSLSSRGVQYLMDKHATK 226

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +G+ +    H LRHSFATHLL NG D+R +Q +LGH  LSTTQIYT+V +      +++ 
Sbjct: 227 IGMHMKLHPHMLRHSFATHLLDNGADIRVVQELLGHSSLSTTQIYTHVTTAQ----LVKA 282

Query: 314 YDQTHPSIT 322
           Y + HP   
Sbjct: 283 YKKAHPFEK 291


>gi|226306026|ref|YP_002765986.1| tyrosine recombinase XerC [Rhodococcus erythropolis PR4]
 gi|226185143|dbj|BAH33247.1| tyrosine recombinase XerC [Rhodococcus erythropolis PR4]
          Length = 310

 Score =  232 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 79/315 (25%), Positives = 145/315 (46%), Gaps = 10/315 (3%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           +++   L      + ++L + RG S+ T+++Y  D R  L   +  +E       + +L 
Sbjct: 5   DVLPASLSVHLDAYAEHLRLSRGRSEHTIRAYVGDARALLTHFSAGSEN----ADLDRLD 60

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
            + +R++++ +        ++ R  S  + F  +L +    +      +       +LP 
Sbjct: 61  LSVMRSWLAAQNAVGTARTTVARRASSARGFTAWLAQTGRISVDPGTRLAAPPARRTLPT 120

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L + QAL  +D        + + +  R+  I+ LLY  G+R+ E   L  +++  D+  
Sbjct: 121 VLRQSQALDAMDAAESGA-QQQEPLALRDRLIVELLYSTGIRVGELCGLDVESVDADRRL 179

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRY 246
           LR+ GKG+K R VP       A+  + +     L+ +     L  G+RG  L+    +  
Sbjct: 180 LRVLGKGNKERSVPYGLPAESALNGWLEHGRPALSSDRSGRALLLGVRGGRLDQRQARSV 239

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           + +    +        H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V+ +  
Sbjct: 240 VHETMAAIPGAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHASLATTQLYTHVSVER- 298

Query: 307 GDWMMEIYDQTHPSI 321
              +  ++DQ HP  
Sbjct: 299 ---LRSVHDQAHPRA 310


>gi|329889983|ref|ZP_08268326.1| tyrosine recombinase xerD [Brevundimonas diminuta ATCC 11568]
 gi|328845284|gb|EGF94848.1| tyrosine recombinase xerD [Brevundimonas diminuta ATCC 11568]
          Length = 300

 Score =  232 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 79/313 (25%), Positives = 133/313 (42%), Gaps = 19/313 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + + +L+ + +ER  S  TL +Y  D      +L          Q         + A
Sbjct: 1   MTPQIEAFLEMMAVERDASPHTLAAYGRDLADAQTWLNDVGGLMGAPQ-------EALEA 53

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           + +    + +   +  R  + ++ F ++        +     +   K+  SLP+ L+  +
Sbjct: 54  WFADLSRRGLSAATAARRRASVRQFYRFALGEGWRADDPSRRLDAPKQGRSLPKTLSRDE 113

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L    L            R   ++ + Y  GLR+SE L+L  + +  D + L ++GK
Sbjct: 114 IEAL----LTAAGAADSTAGLRLIVLVEMAYASGLRVSELLALKVEAVRRDPAYLIVRGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLN--IQLPLFRGI-RGKPLNPGVFQRYIRQL 250
           G K R+ PL    R+AI  + +        N      LF    +   L P  F + + Q 
Sbjct: 170 GGKERLAPLNMPAREAIKAWLNARDAARKPNTPDSAWLFPSHGKSGHLTPRRFAQLLDQA 229

Query: 251 RRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
               G+ P   + H LRH+FATHLL  G DLR +Q++LGH  +STTQIYT+V      D 
Sbjct: 230 AVMAGIDPARVSPHVLRHAFATHLLEGGADLRVVQTLLGHADISTTQIYTHV----AVDR 285

Query: 310 MMEIYDQTHPSIT 322
           + ++    HP   
Sbjct: 286 LSQVVHANHPLAK 298


>gi|261880904|ref|ZP_06007331.1| tyrosine recombinase XerD [Prevotella bergensis DSM 17361]
 gi|270332412|gb|EFA43198.1| tyrosine recombinase XerD [Prevotella bergensis DSM 17361]
          Length = 292

 Score =  231 bits (590), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 71/304 (23%), Positives = 134/304 (44%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L+ E   S LT++SY  D + F +F      +     +   +    IR ++  
Sbjct: 2   IEKFLNYLQFELCRSPLTVESYRRDLQAFEVFFRNLNGQ----LSWESVDSDVIRDWMEG 57

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S+ R LS ++S  ++    ++        +   KK   LP+ L E +   L
Sbjct: 58  MMDRGNNAASVNRRLSALRSLYRFALSHQLVARDPARCIDGPKKQKPLPQFLKENEMDRL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D++       + + D R   I+   Y  G+R+SE + L  ++       L++ GKG+K 
Sbjct: 118 LDDM----EWGSGYKDVRAKTIITTFYETGIRLSELVGLDDESADFHNHQLKVTGKGNKQ 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RI+P    + K +  + +    ++       LF    G  +     ++ ++     +   
Sbjct: 174 RIIPFGDELEKTLRWFVETRNREVE-RTGNALFVTEEGVRMTSQQVRQEVKARLAQVCTL 232

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T H LRH+FAT +L++G  L S++ +LGH  +STT+IYT+   +     + + Y   
Sbjct: 233 KKLTPHVLRHTFATTMLNHGAGLESVKRLLGHESVSTTEIYTHTTFEQ----LKQAYKDA 288

Query: 318 HPSI 321
           HP  
Sbjct: 289 HPRA 292


>gi|148652162|ref|YP_001279255.1| phage integrase family protein [Psychrobacter sp. PRwf-1]
 gi|148571246|gb|ABQ93305.1| tyrosine recombinase XerC subunit [Psychrobacter sp. PRwf-1]
          Length = 341

 Score =  231 bits (590), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 86/319 (26%), Positives = 146/319 (45%), Gaps = 17/319 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
            LL   + WL  L + R +S  T+ +Y     Q   FLA             +    ++ 
Sbjct: 32  ALLPPVEQWLSELSV-RQMSAHTIDAYYAGLYQLACFLAQAQ------LNWTRCDKRQLA 84

Query: 73  AFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
            +I+KR  T  +   S+++ LS I+ F  +L ++     +     +  +    LP   + 
Sbjct: 85  KYIAKRLDTDALAISSVQQELSAIRHFYSWLIEQGQARINPTTGYQLKRAPRPLPSIADG 144

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD----QST 187
                L++  +  T  + + +  R+ A+  LLY  GLR+ E + L   ++  D    +  
Sbjct: 145 DLIAQLLEQPMPDTPEQAR-LWIRDKAMFELLYSSGLRVGELVGLNVADLRIDAKGERGE 203

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           +R+ GKG+K R+VP+     KAI  Y            +        G  L     Q+ +
Sbjct: 204 VRVTGKGNKTRLVPVGRQALKAINRYLPHRNLWEERGDRALFISEKHGTRLTTRAVQQRL 263

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +      G+  +   H LRH FA+H+LS  GDLR++Q +LGH  +STTQIYT+V+     
Sbjct: 264 KVAAARAGIAQNMYPHLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTHVDF---- 319

Query: 308 DWMMEIYDQTHPSITQKDK 326
           D + ++YD+ HP  +Q+ K
Sbjct: 320 DRLTQVYDKAHPRASQEKK 338


>gi|256825348|ref|YP_003149308.1| site-specific tyrosine recombinase XerD [Kytococcus sedentarius DSM
           20547]
 gi|256688741|gb|ACV06543.1| tyrosine recombinase XerD subunit [Kytococcus sedentarius DSM
           20547]
          Length = 316

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 81/319 (25%), Positives = 138/319 (43%), Gaps = 14/319 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +   L    + WL +L +ERGLS  T  +Y  D   ++  L     +     +   +   
Sbjct: 1   MDSPLWPAVEEWLAHLGVERGLSANTTSAYRRDLVAWVAHL-----DAAGRTSWPSVQAA 55

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++R  ++          ++ R +  ++ F  +             ++        LP+AL
Sbjct: 56  DVRQHLADLTASGRARSTVTRMVVAVRRFHAFALAEGWVEVDVAADVAPPAAVQPLPKAL 115

Query: 130 NEKQALTLVDNV---LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           +  +   L+++              +  R+ A+L LLYG G R+SE  SL   ++  D  
Sbjct: 116 SLDEVARLIESTGPVEGGADAVELAVARRDRAVLELLYGTGARVSEVTSLDVDDVDLDGL 175

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQ 244
            +R+ GKG K R VPL  +   A+ ++       L         L    RG+ L      
Sbjct: 176 VVRLVGKGSKERHVPLGGAAAAAVGDWLATGRPVLAARGSGGAALLLNQRGRRLGRQSAW 235

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +    R  GL    + HTLRHS+ATHL++ G D+R +Q +LGH  ++TTQIYT V   
Sbjct: 236 ALVTAAGRRAGLGEHLSPHTLRHSYATHLMAGGADVRVVQELLGHASVTTTQIYTRVTP- 294

Query: 305 NGGDWMMEIYDQTHPSITQ 323
              D + E++ ++HP   +
Sbjct: 295 ---DHLREVFQESHPRAQE 310


>gi|323466640|gb|ADX70327.1| Integrase/recombinase XerC [Lactobacillus helveticus H10]
          Length = 302

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 84/312 (26%), Positives = 145/312 (46%), Gaps = 14/312 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E   E  +++  L+ ER  S+LT+ SY+ D  +   F     +E       + +   +I+
Sbjct: 3   EKQDELTHFISYLQNERHYSELTISSYQTDLLEAKKFW----QENGGFDGWKNVQERDIQ 58

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            ++     +K+   S  R +S + SF ++L +RK         +   +    LP      
Sbjct: 59  IYLQNLADRKLVRSSQARQMSSLHSFFRFLTRRKFIKIDPTQGITLRRGEKKLPEFFYGN 118

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   + D++        K +  RN A+  L Y  G+R+SE  +LT + I  +  T+ + G
Sbjct: 119 ELKQVFDSL-----KGNKPLTMRNLALFELFYATGMRVSEVSNLTLRQIDLNLQTILVHG 173

Query: 193 KGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG+K R V      +K+++ Y  D  P  L    +  +F    G PL+    +  +++  
Sbjct: 174 KGNKDRYVAFDDHTKKSLVRYLEDARPNLLKDETEQHVFLSNLGNPLSKRGIEYVMQKTF 233

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+      H LRH+FAT +L+NG DLRS+Q +LGH  LS TQIYT+V   +    + 
Sbjct: 234 NQAGISGKVHPHELRHTFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAH----LK 289

Query: 312 EIYDQTHPSITQ 323
             Y++  P   +
Sbjct: 290 SDYEKYFPRNKE 301


>gi|217969617|ref|YP_002354851.1| tyrosine recombinase XerD [Thauera sp. MZ1T]
 gi|217506944|gb|ACK53955.1| tyrosine recombinase XerD [Thauera sp. MZ1T]
          Length = 309

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 139/314 (44%), Gaps = 18/314 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +      E   +   L +E GL++ TL  Y  D  +F  +L    +           +Y 
Sbjct: 12  LQPAHRAELDRFADALWLEHGLARNTLAGYRSDLARFAAWLETRAQRLPAAAGADLAAYL 71

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
                     ++     S +R ++  + + + L   +   E   L +   + +   P+ L
Sbjct: 72  -------AEFSRAAKPASQRRLIAAWRRYYRLLLANREIAEDPTLAIDTPRAAERFPKTL 124

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +E Q   L+    L T         R+  +L +LY  GLR+SE + L    +  ++  +R
Sbjct: 125 SEPQVEALLAAPALDTPQ-----GLRDRCMLEVLYAAGLRVSELVGLKIFAVGVNEGVVR 179

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           + GKG K R+VPL       +  Y  +  P  L       +F    G  ++  +F R I+
Sbjct: 180 VMGKGSKERLVPLGEIAADWLQRYLAEARPVLLAGRSCDEIFVTRLGAAMSRQMFWRLIK 239

Query: 249 QLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                 G+ P   + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +   
Sbjct: 240 HYALAAGIAPERISPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER-- 297

Query: 308 DWMMEIYDQTHPSI 321
             + +++ + HP  
Sbjct: 298 --LKQLHARHHPRA 309


>gi|238763615|ref|ZP_04624575.1| Tyrosine recombinase [Yersinia kristensenii ATCC 33638]
 gi|238698093|gb|EEP90850.1| Tyrosine recombinase [Yersinia kristensenii ATCC 33638]
          Length = 263

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 71/269 (26%), Positives = 134/269 (49%), Gaps = 12/269 (4%)

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
            E++ +   + L   ++R+ +S+ +   +   SL   LS ++SFL +L  + +   +   
Sbjct: 4   GEQMGLAHWQTLDAAQVRSLVSRSKRAGLHSSSLALRLSALRSFLNWLVSQGVMQVNPAK 63

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            +   +    LP+ ++  +   L+D  L         +  R+ A+L ++YG GLR+SE +
Sbjct: 64  GVSTPRSGRHLPKNIDVDEVDKLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELV 117

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
            +  +++      + + GKG K R VP+  +  K +  + +L   +L       +F    
Sbjct: 118 GMNCKHVDLASGEVWVMGKGSKERKVPIGKTAVKWLEHWLELR--ELFEPQDDAIFLANT 175

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           GK ++    Q+   +     G+      H LRHSFATH+L + GDLR++Q +LGH  L+T
Sbjct: 176 GKRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTT 235

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
           TQIYT+++ ++    +  +YD  HP   +
Sbjct: 236 TQIYTHLDFQH----LATVYDAAHPRAKR 260


>gi|118498082|ref|YP_899132.1| site-specific recombinase [Francisella tularensis subsp. novicida
           U112]
 gi|194323307|ref|ZP_03057091.1| phage integrase family protein [Francisella tularensis subsp.
           novicida FTE]
 gi|254373434|ref|ZP_04988922.1| integrase/recombinase XerC [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|254374894|ref|ZP_04990375.1| hypothetical protein FTDG_01073 [Francisella novicida GA99-3548]
 gi|118423988|gb|ABK90378.1| site-specific recombinase [Francisella novicida U112]
 gi|151571160|gb|EDN36814.1| integrase/recombinase XerC [Francisella novicida GA99-3549]
 gi|151572613|gb|EDN38267.1| hypothetical protein FTDG_01073 [Francisella novicida GA99-3548]
 gi|194322671|gb|EDX20151.1| phage integrase family protein [Francisella tularensis subsp.
           novicida FTE]
          Length = 292

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 86/310 (27%), Positives = 153/310 (49%), Gaps = 21/310 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+   N+L NL   +  S+ T+ +Y+ D  Q          + ++ + I  L++++I  +
Sbjct: 4   LEHINNFLDNLLYLKNYSQETINNYQRDLLQL--------NQALSDKNIISLTHSDILIW 55

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I K   Q    ++L+R LS ++SF  +L   +I +++    ++  K S  LP+ +N  + 
Sbjct: 56  IKKLHAQGNSPKTLQRKLSSVRSFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDEL 115

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D       + +  I+AR+ A   LLY CG+R+SE  S+  ++I   Q  +R+ GKG
Sbjct: 116 AYLLDV------NPSNDIEARDIACFDLLYSCGIRLSELSSVELKDISISQKNIRVTGKG 169

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +K RIV         +  +  +   D        LF    GK L     Q+ +    +  
Sbjct: 170 NKQRIVYFGTKTLSNLNRWLKIR--DSLKPSSDYLFISRDGKHLTNRSIQKRLEIFAQKY 227

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
                   H LRHSFA+H+L +  DL +++ +LGH  +S+TQIYT++N +     +  ++
Sbjct: 228 A-SRHIHPHMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQ----LASVF 282

Query: 315 DQTHPSITQK 324
           D+ HP   +K
Sbjct: 283 DKAHPRAKKK 292


>gi|313897322|ref|ZP_07830865.1| phage integrase, N-terminal SAM domain protein [Clostridium sp.
           HGF2]
 gi|312957692|gb|EFR39317.1| phage integrase, N-terminal SAM domain protein [Clostridium sp.
           HGF2]
          Length = 307

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 94/320 (29%), Positives = 145/320 (45%), Gaps = 22/320 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +  Q++L  ++     S  T+ SY  D +++L +L    + ++       +   +I++
Sbjct: 3   LQEALQDYLHYIQAVDQKSLATIHSYTQDLQEYLSWLQMQGKTEM-----EDILPRDIQS 57

Query: 74  FISKRRTQK-------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           F+S                 S+   LS I  F +++     +     +++R  KK   LP
Sbjct: 58  FLSDMEQGDIQEDGLCYKRSSVNHMLSSIHMFHRFISMNHPSILDPSIHLRGGKKEQKLP 117

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
              N      L+D+                 AIL LLYGCGLR+SE   L    +  +Q 
Sbjct: 118 LYFNPHDIELLLDSF------GQDAQGLYQKAILELLYGCGLRVSEVCELRINQVHLEQG 171

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            LR+ GKGDK R+VP+     + +  Y               +F   RG  L        
Sbjct: 172 YLRVIGKGDKERMVPMHERCMRVLRTYLTQIRPTWEKRKSTRVFLNSRGNVLTRQYVHTL 231

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           I+Q  + LGL    +AH+ RHSFATHLL  G DLR +Q +LGH  ++TTQIYT+V ++  
Sbjct: 232 IKQRLQALGLDERLSAHSFRHSFATHLLDGGADLRVVQELLGHSDIATTQIYTHVQNRR- 290

Query: 307 GDWMMEIYDQTHPSITQKDK 326
              + E  DQ HP   +K+K
Sbjct: 291 ---LKEAIDQYHPRSVKKEK 307


>gi|256847174|ref|ZP_05552620.1| tyrosine recombinase XerC [Lactobacillus coleohominis 101-4-CHN]
 gi|256715838|gb|EEU30813.1| tyrosine recombinase XerC [Lactobacillus coleohominis 101-4-CHN]
          Length = 312

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 92/310 (29%), Positives = 144/310 (46%), Gaps = 15/310 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   L  ER L+  T+Q YE D R F  FL      K       ++   +I+A+++    
Sbjct: 13  FAIYLTGERQLAATTVQGYENDLRMFRKFLTA----KKHWLGWLKIKRQDIQAYLTHLND 68

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            +    ++ R L+ +++F  +L    +   +    +R    S SLPR   E +   L   
Sbjct: 69  LRRQWTTINRELASLRTFYNFLLTNGLVVANPFDEVRMKHHSRSLPRYFYEPEMNALFK- 127

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                  + + +D RN AI+ LLY  G+R+SE  SL+ + I  D   + + GKGDK R V
Sbjct: 128 ---AADGDGRPLDFRNRAIIELLYATGMRVSECASLSLEQINWDVQMILVHGKGDKERYV 184

Query: 201 PLLPSVRKAILEYYDLCP---FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           P     + A+  Y   C     D        +F    GKP+     +  + Q+ +   L 
Sbjct: 185 PFGHYAKVALERYLHECREPLMDKYHEEHRRVFINHYGKPITSEGIEYVLNQVVKKSSLN 244

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           +    H LRHSFAT +L+NG D+RS+Q +LGH  LSTTQIYT+V  +N    + + Y + 
Sbjct: 245 IHIHPHMLRHSFATAMLNNGADIRSVQELLGHSSLSTTQIYTHVTREN----LQKTYMKL 300

Query: 318 HPSITQKDKK 327
            P      + 
Sbjct: 301 FPRAKMTKED 310


>gi|56708541|ref|YP_170437.1| integrase/recombinase XerC [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89255722|ref|YP_513083.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica LVS]
 gi|110671012|ref|YP_667569.1| integrase/recombinase XerC [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115314216|ref|YP_762939.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156501676|ref|YP_001427741.1| phage integrase family protein [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|224457717|ref|ZP_03666190.1| phage integrase family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254367099|ref|ZP_04983133.1| integrase/recombinase xerC [Francisella tularensis subsp.
           holarctica 257]
 gi|254371168|ref|ZP_04987170.1| site-specific recombinase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875393|ref|ZP_05248103.1| integrase/recombinase xerC [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|290953429|ref|ZP_06558050.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313310|ref|ZP_06803933.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica URFT1]
 gi|56605033|emb|CAG46136.1| Integrase/recombinase XerC [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89143553|emb|CAJ78731.1| Integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica LVS]
 gi|110321345|emb|CAL09519.1| Integrase/recombinase XerC [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115129115|gb|ABI82302.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134252923|gb|EBA52017.1| integrase/recombinase xerC [Francisella tularensis subsp.
           holarctica 257]
 gi|151569408|gb|EDN35062.1| site-specific recombinase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|156252279|gb|ABU60785.1| phage integrase family protein [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|254841392|gb|EET19828.1| integrase/recombinase xerC [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159761|gb|ADA79152.1| integrase/recombinase XerC [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 292

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 86/310 (27%), Positives = 153/310 (49%), Gaps = 21/310 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+   N+L NL   +  S+ T+ +Y+ D  Q          + ++ + I  L++++I  +
Sbjct: 4   LEHINNFLDNLLYLKNYSQETINNYQRDLLQL--------NQALSDKNIISLTHSDILIW 55

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I K   Q    ++L+R LS ++SF  +L   +I +++    ++  K S  LP+ +N  + 
Sbjct: 56  IKKLHAQGNSPKTLQRKLSSVRSFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDEL 115

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D       + +  I+AR+ A   LLY CG+R+SE  S+  ++I   Q  +R+ GKG
Sbjct: 116 AYLLDI------NPSNDIEARDIACFDLLYSCGIRLSELSSVELKDISISQKNIRVTGKG 169

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +K RIV         +  +  +   D        LF    GK L     Q+ +    +  
Sbjct: 170 NKQRIVYFGTKTLSNLNRWLKIR--DSLKPSSDYLFISRDGKHLTNRSIQKRLEIFAQKY 227

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
                   H LRHSFA+H+L +  DL +++ +LGH  +S+TQIYT++N +     +  ++
Sbjct: 228 A-SRHIHPHMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQ----LASVF 282

Query: 315 DQTHPSITQK 324
           D+ HP   +K
Sbjct: 283 DKAHPRAKKK 292


>gi|15604648|ref|NP_221166.1| site-specific tyrosine recombinase XerC [Rickettsia prowazekii str.
           Madrid E]
 gi|34223090|sp|Q9ZCE0|XERC_RICPR RecName: Full=Tyrosine recombinase xerC
 gi|3861343|emb|CAA15242.1| PROBABLE INTEGRASE/RECOMBINASE RIPX (xerC) [Rickettsia prowazekii]
 gi|292572467|gb|ADE30382.1| Tyrosine recombinase XerC [Rickettsia prowazekii Rp22]
          Length = 305

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 112/311 (36%), Positives = 184/311 (59%), Gaps = 9/311 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++   + +  + W + L +++  S  T+ +Y  D + FL F+ +Y  E +T+  I+    
Sbjct: 1   MLDISIQELIKQWQKYLILQKNYSNNTVIAYNNDLKHFLEFMNYYNSELVTLNHIKTADI 60

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             IR++++KR+ +     S+ R LS +K+F K+L+K  +     I ++++ KK+  LP+ 
Sbjct: 61  RLIRSWLAKRKCENFTASSIARGLSTVKNFYKFLEKTLLLNNHIIFSIKSPKKAKLLPKG 120

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+    L  +++  +      KW++ RN A++ L+Y  GLRISEALS+T  + + +   +
Sbjct: 121 LSVDDVLISLEH--IEEYGNVKWVELRNKALIVLIYAAGLRISEALSITKLH-LQNLEFI 177

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           +I GKG K RI+P LP  +  I +Y ++ P+ L+ N   P+FRG +GK L P VF R + 
Sbjct: 178 KIIGKGSKERIIPWLPLTKNLITKYLEILPYKLDENE--PIFRGRQGKKLQPSVFNRELI 235

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L+R  GLP   TAH+ RHSFA+HLL  G DLRSIQ +LGH  LSTTQ YT  + K+   
Sbjct: 236 KLKRIYGLPEYLTAHSFRHSFASHLLEYGADLRSIQELLGHKSLSTTQKYTQTSIKH--- 292

Query: 309 WMMEIYDQTHP 319
            +  +Y+  +P
Sbjct: 293 -LEAVYNTAYP 302


>gi|330719126|ref|ZP_08313726.1| site-specific recombinase, phage integrase family protein
           [Leuconostoc fallax KCTC 3537]
          Length = 308

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 84/315 (26%), Positives = 147/315 (46%), Gaps = 15/315 (4%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E Q +   LE ER  S  T+++Y  D  +F+ FL     +     +  ++   +IR +++
Sbjct: 5   ELQLYRDYLEFERLYSAQTIKAYMIDIHEFVDFLK----QNGGFTSYAKVQTLDIRVYLN 60

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               + +   ++ R +S ++ F ++L    +  ++   N+   K  N LP    E++   
Sbjct: 61  DLYERSLARTTIARKISSLRMFYQFLVANHVLEDNPFENVALRKHQNHLPEFFYEEEMKV 120

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L D       ++   +  RN+A+L LLY  G R++E ++L    +   +  + ++GKGDK
Sbjct: 121 LFDT----AYNQHTKLWQRNAALLELLYATGARVAEIVNLRLPQLDFSKKLVLLRGKGDK 176

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            R VP        +  Y      +L          +F   RG PL        + QL + 
Sbjct: 177 ERYVPFGKFADHILQRYTQELRQELLTQYQQDHDFVFVNNRGAPLTTAGVSYILSQLMKQ 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L      H LRH+FATHLL++G D+R++Q +LGH  LSTTQ+YT+V  ++    + + 
Sbjct: 237 SSLNGKIHPHMLRHTFATHLLNHGADMRTVQELLGHVNLSTTQVYTHVTRES----LQKN 292

Query: 314 YDQTHPSITQKDKKN 328
           Y    P     D ++
Sbjct: 293 YQNFFPRAKLNDTQS 307


>gi|189182982|ref|YP_001936767.1| site-specific tyrosine recombinase XerD [Orientia tsutsugamushi
           str. Ikeda]
 gi|189179753|dbj|BAG39533.1| integrase/recombinase XerD [Orientia tsutsugamushi str. Ikeda]
          Length = 309

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 87/321 (27%), Positives = 155/321 (48%), Gaps = 24/321 (7%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +   + +L+ +  E+ +S  +L +Y+ D + F  FL     + I +Q+   ++  +I +F
Sbjct: 1   MDFLEQFLETVLAEKNVSANSLLAYKRDLQDFNDFL-----KSIQLQSSLAVTNNDIDSF 55

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I     + +  RS+ R +S ++ +  +L          + N+   + S  LP+ L+ K+ 
Sbjct: 56  IQHLLGKNLSFRSIARKISTLRQYYLFLLTENAVQADLVTNIEVPRYSTKLPKILSIKEI 115

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--- 191
             L+D     T+ E      R  A++ LLY  GLR+SE +S+   ++  D +T +I+   
Sbjct: 116 KVLIDYCFKDTTAE----GIRTLAMICLLYSTGLRVSELVSVKITDLKFDHNTGKIKNHF 171

Query: 192 ---GKGDKIRIVPLLPSVRKAILEYYDLCPFD---LNLNIQLPLFRGI-RGKPLNPGVFQ 244
              GKG+K R+V +       I +Y     F     N    + LF    +   +    F 
Sbjct: 172 VILGKGNKERLVIMNDLTGDVISKYLPYRDFFSPFKNAKNSVYLFPSKAKQGYMTRQNFA 231

Query: 245 RYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             ++      GL P + + H LRHSFA+HLL  G DL+ IQ +LGH  +S+TQIYT+V  
Sbjct: 232 ILLKHAAINAGLSPDNVSPHILRHSFASHLLEGGADLKVIQELLGHVDISSTQIYTHVQP 291

Query: 304 KNGGDWMMEIYDQTHPSITQK 324
           +     +  + ++ HP+  +K
Sbjct: 292 ER----LKHVIEKYHPASLKK 308


>gi|289523043|ref|ZP_06439897.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503586|gb|EFD24750.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 299

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 98/313 (31%), Positives = 156/313 (49%), Gaps = 18/313 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           V  E  K  +++   L +ERG S+ T+++Y  D  +++ F +    + I  +        
Sbjct: 4   VPEESHKLVRDFAGYLRLERGYSENTIEAYMTDIAKWIKFCSNQNLDPIPPRH------E 57

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +  F+    ++     SL+R  + I+S+ +YL           L      K   LPR L
Sbjct: 58  YMSRFLKAMASEGKSKASLQRYAAAIRSWNRYLTIEGWVDGEQWLP-SLPSKEQKLPRIL 116

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +E +   L+ +       +   +  R+ A+  L YGCGLR SE  SL  ++I     TLR
Sbjct: 117 SEGEIERLISSC-----RDGSVLGGRDEALFELAYGCGLRASEVCSLALEDIDWRAGTLR 171

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKGDK R+VPLL SV++ +  Y D     LN   +  LF    G+ L+     R IR+
Sbjct: 172 VIGKGDKERVVPLLGSVKEKLRHYVDAIRPLLNRREERWLFLTRTGRKLHREDLWRIIRR 231

Query: 250 LRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
             +  G+P +    H LRHS ATH+L  G DLR++Q +LGH  +STT+ YT+++ +    
Sbjct: 232 RGKAAGIPSVRLHPHVLRHSLATHMLRRGLDLRTLQELLGHASISTTERYTHLDLE---- 287

Query: 309 WMMEIYDQTHPSI 321
            + +IYD+ HP  
Sbjct: 288 -LRDIYDKCHPRA 299


>gi|67459687|ref|YP_247311.1| site-specific tyrosine recombinase XerC [Rickettsia felis
           URRWXCal2]
 gi|75535922|sp|Q4UJZ3|XERC_RICFE RecName: Full=Tyrosine recombinase xerC
 gi|67005220|gb|AAY62146.1| Tyrosine recombinase XerC [Rickettsia felis URRWXCal2]
          Length = 305

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 116/311 (37%), Positives = 182/311 (58%), Gaps = 9/311 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++   + +    W + L+++R  S  T+ SY  D + FL F+ +Y  E +TI  I+    
Sbjct: 1   MLDTSIQELIDKWQKYLDLQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADI 60

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             IR++++KR        S+ R LS +K+F ++L+K        I ++++ KK+  LP+A
Sbjct: 61  RLIRSWLAKRNCDNFTTSSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKA 120

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+E   +  +++  +      KW++ RN A+L L+Y  GLRISEALS+T  + + +   +
Sbjct: 121 LSEDDVVISLEH--IEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLH-LQNLEFI 177

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKG K RI+P LP  +  I +Y ++ P+ L  N   P+FRG +GK L P VF R + 
Sbjct: 178 RIIGKGSKERIIPWLPIAKNLITQYLEILPYKLGDNE--PIFRGKQGKKLQPPVFNRELI 235

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L+ + GLP   TAH+ RHSFA+HLL +G DLRSIQ +LGH  LSTTQ YT  + K+   
Sbjct: 236 KLKHFYGLPQHLTAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTSIKH--- 292

Query: 309 WMMEIYDQTHP 319
            +  +Y   +P
Sbjct: 293 -LEAVYTTAYP 302


>gi|172057895|ref|YP_001814355.1| integrase family protein [Exiguobacterium sibiricum 255-15]
 gi|171990416|gb|ACB61338.1| integrase family protein [Exiguobacterium sibiricum 255-15]
          Length = 292

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 85/312 (27%), Positives = 144/312 (46%), Gaps = 22/312 (7%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           V  E    R+++L+ + IER LS  T +SY+   RQ+  F   +    I + T       
Sbjct: 3   VDLEFDVLRKSFLRYVHIERQLSPNTGRSYDQTLRQYAAFCLDHQLGSIELATA------ 56

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
             R ++     QK    ++ + +S +K F ++   R     +    ++  K+  +LP  L
Sbjct: 57  --RRYLFALYDQKASKSTIAQKVSCLKQFGRF-VTRDTNDVNPFEGLKAPKRVQTLPTFL 113

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              +    ++         +  +  RN A++ LLY  G+R+SE   L  +++  D   + 
Sbjct: 114 VPSEYERFLEVF-----RTSDALGVRNVALIELLYATGMRVSELAGLNVKDLDSDLEYVH 168

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG K RI P+    RKA+ +Y          + +  +F    G+ L     ++ +++
Sbjct: 169 VYGKGRKERITPIGSFARKALTDYLAERQP--TEDEEQAVFLSRSGRRLTTDGIRKILKK 226

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
              +  L    T H LRHSFAT LL  G DLR++Q +LGH  LSTT  YT+V ++     
Sbjct: 227 ADPF--LSKHVTPHALRHSFATDLLERGADLRAVQELLGHASLSTTGQYTHVTTER---- 280

Query: 310 MMEIYDQTHPSI 321
           +  +Y Q HP  
Sbjct: 281 LRHVYQQAHPRA 292


>gi|149199225|ref|ZP_01876263.1| tyrosine recombinase [Lentisphaera araneosa HTCC2155]
 gi|149137650|gb|EDM26065.1| tyrosine recombinase [Lentisphaera araneosa HTCC2155]
          Length = 292

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 84/303 (27%), Positives = 139/303 (45%), Gaps = 15/303 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +   L +ERGLS+ T+ +Y  D   F  +      ++        ++  ++  +    +
Sbjct: 4   QFKLYLSLERGLSQNTIDAYINDLNDFTAYQEQKLNKEYP-----SINKDDLLNYCEDCK 58

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +++ D ++ R L  +K F ++L + KI  +    ++ + + S  LP  L+  +   L+ 
Sbjct: 59  NRELNDSTISRRLVTLKIFFRFLYQEKIVPKDVGEHLESARLSRLLPDYLSLPEIERLL- 117

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
               H   E   +  RN  I+ LLY CGLRISE   L   +   +   LR++GKG K R 
Sbjct: 118 ----HIYDEAIPLQFRNKFIIELLYSCGLRISELCGLRTDSFNYESGFLRVKGKGSKERS 173

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP    V     +Y       L      P L     G+PL      +++++      +  
Sbjct: 174 VPFGTQVASMSRQYIKNIRPQLCKKNNPPELIVSNNGRPLTRSRVWQFLKEAAIKAEINK 233

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           +   H LRHSFA+HLLSN  DLR IQ +LGH  ++TT+IYT+V        +  I+ +  
Sbjct: 234 NLHPHVLRHSFASHLLSNNADLRIIQELLGHADIATTEIYTHV----EKTRLQNIHQKFF 289

Query: 319 PSI 321
           P  
Sbjct: 290 PRA 292


>gi|260101613|ref|ZP_05751850.1| integrase/recombinase XerC [Lactobacillus helveticus DSM 20075]
 gi|260084576|gb|EEW68696.1| integrase/recombinase XerC [Lactobacillus helveticus DSM 20075]
          Length = 302

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 84/312 (26%), Positives = 145/312 (46%), Gaps = 14/312 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E   E  +++  L+ ER  S+LT+ SY+ D  +   F     +E       + +   +I+
Sbjct: 3   EKQDELTHFISYLQNERHYSELTISSYQTDLLEAKKFW----QENGGFDGWKNVQERDIQ 58

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            ++     +K+   S  R +S + SF ++L +RK         +   +    LP      
Sbjct: 59  IYLQNLADRKLVRSSQARQMSSLHSFFRFLTRRKFIKIDPTQGITLRRGEKKLPEFFFGN 118

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   + D++        K +  RN A+  L Y  G+R+SE  +LT + I  +  T+ + G
Sbjct: 119 ELKQVFDSL-----KGNKPLTMRNLALFELFYATGMRVSEVSNLTLRQIDLNLQTILVHG 173

Query: 193 KGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG+K R V      +K+++ Y  D  P  L    +  +F    G PL+    +  +++  
Sbjct: 174 KGNKDRYVAFDDHTKKSLVRYLEDARPNLLKDETEQHVFLSNLGNPLSKRGIEYVMQKTF 233

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+      H LRH+FAT +L+NG DLRS+Q +LGH  LS TQIYT+V   +    + 
Sbjct: 234 NQAGISGKVHPHELRHTFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAH----LK 289

Query: 312 EIYDQTHPSITQ 323
             Y++  P   +
Sbjct: 290 SDYEKYFPRNKE 301


>gi|300854312|ref|YP_003779296.1| putative integrase/recombinase XerD [Clostridium ljungdahlii DSM
           13528]
 gi|300434427|gb|ADK14194.1| predicted integrase/recombinase XerD [Clostridium ljungdahlii DSM
           13528]
          Length = 292

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 147/293 (50%), Gaps = 15/293 (5%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           + +SK T+ +Y  D  +F  F+    E       +  +    I A++   + +     S+
Sbjct: 15  KHMSKNTMDAYVRDITRFYNFIKDREE------NLENVEVVSIMAYVQYLQKEGRAISSI 68

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R++  +++F KYL  + +  E+ +L  +  K  + +P+ L  ++   L++       + 
Sbjct: 69  VRNIVSLRNFYKYLMLKGVLNENPVLYYQIPKVEHKVPKILTIEEVDKLLE-----APNL 123

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
                 R+ A+L ++Y  G+++ E LSLT  +I    S +R +   ++ RIVP+     K
Sbjct: 124 DTNKGIRDKAMLEVMYAAGMKVMELLSLTIYDIDLKLSYVRCRSLKEEERIVPIGSVAVK 183

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            +  Y ++    LN+     LF  +RG  ++   F + ++   +   +  +  A TLRHS
Sbjct: 184 YLKNYLNIRH-KLNIYNLDVLFLNLRGVQMSRQGFWKIVKYYAKEANIDKNINAFTLRHS 242

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           FA HLL NG D++S+Q +LGH  LS TQIY++V  +N    + ++Y ++HP  
Sbjct: 243 FAVHLLQNGADIKSVQELLGHKELSATQIYSSVIKRN---KIAQVYKKSHPRA 292


>gi|238798591|ref|ZP_04642067.1| Tyrosine recombinase [Yersinia mollaretii ATCC 43969]
 gi|238717547|gb|EEQ09387.1| Tyrosine recombinase [Yersinia mollaretii ATCC 43969]
          Length = 263

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 70/269 (26%), Positives = 132/269 (49%), Gaps = 12/269 (4%)

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
            E++ +   + L   ++R+ +S+ +   +   SL   LS ++SFL +L  + +   +   
Sbjct: 4   GEQMGLAHWQTLDAAQVRSLVSRSKRAGLHASSLALRLSALRSFLNWLVSQGVLQANPAK 63

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            +   +    LP+ ++  +   L+D  L         +  R+ A+L ++YG GLR+SE +
Sbjct: 64  GVSTPRSGRHLPKNIDVDEVDKLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELV 117

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
            +  +++      + + GKG K R VP+  +    +  +  L   +L       +F    
Sbjct: 118 GMNCKHVDLVGGEVWVMGKGSKERKVPIGRTAVTWLNHWLALR--ELFEPQDDAIFLANT 175

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           GK ++    Q+   +     G+      H LRHSFATH+L + GDLR++Q +LGH  L+T
Sbjct: 176 GKRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTT 235

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
           TQIYT+++ ++    +  +YD  HP   +
Sbjct: 236 TQIYTHLDFQH----LATVYDAAHPRAKR 260


>gi|326315550|ref|YP_004233222.1| integrase family protein [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323372386|gb|ADX44655.1| integrase family protein [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 326

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 86/320 (26%), Positives = 148/320 (46%), Gaps = 26/320 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+++ +E+ L++ T+  Y  D  +                 + QL    IR F+++  
Sbjct: 17  RYLEHVRVEKRLAQRTVTLYTLDLAKLAASARDAG------VPLLQLQTAHIRRFVAQMH 70

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
               G R +   LSG + F  +  ++ +   + +  +R  +    LP+AL    A+ L +
Sbjct: 71  AGGRGGRGIALILSGWRGFFTWAARQGLVPHNPVQGVRAPRAPKPLPKALGVDDAVRLAE 130

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT-----------PQNIMDDQSTL 188
                +S    W++AR++A++ LLYGCGLR+ E   L               I    +  
Sbjct: 131 --FEGSSGSDPWLEARDAAMVELLYGCGLRVGELAGLDAVPGPDTQRQGRGWIDLQAAEA 188

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIRGKPLNPGVFQR 245
            + GKG K R VP+  +   A+  + ++               LF G RG  L       
Sbjct: 189 HVFGKGSKRRSVPVGSAALAALRAWLEVRLQPFGAASGRADAALFLGRRGARLTGQSIWS 248

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +RQ  +  GL      H LRHSFA+HLL + GDLR++Q +LGH  ++TTQ+YT ++ ++
Sbjct: 249 RLRQRSQLAGLSTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTRLDFQH 308

Query: 306 GGDWMMEIYDQTHPSITQKD 325
               + ++YD +HP   +K 
Sbjct: 309 ----LAKVYDASHPRARRKP 324


>gi|213616311|ref|ZP_03372137.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 267

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 80/263 (30%), Positives = 131/263 (49%), Gaps = 11/263 (4%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           +T+      +++  +++R        S  R LS ++ F ++L + K   +     + + K
Sbjct: 14  KTLATAQADDLQTLLAERVEGGYKATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPK 73

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LP+ L+E Q   L+   L+        ++ R+ A+L +LY  GLR+SE + LT  +
Sbjct: 74  LPQRLPKDLSEAQVERLLQAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSD 128

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLN 239
           I   Q  +R+ GKG+K R+VPL       +  Y     P+ LN      LF   R + + 
Sbjct: 129 ISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMT 188

Query: 240 PGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              F   I+      G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIY
Sbjct: 189 RQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIY 248

Query: 299 TNVNSKNGGDWMMEIYDQTHPSI 321
           T+V ++     + +++ Q HP  
Sbjct: 249 THVATER----LRQLHQQHHPRA 267


>gi|294669707|ref|ZP_06734774.1| hypothetical protein NEIELOOT_01608 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308620|gb|EFE49863.1| hypothetical protein NEIELOOT_01608 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 290

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 138/303 (45%), Gaps = 20/303 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
             +L +L ++  LS  TL +Y  D  +  + LA   E+ ++             A +   
Sbjct: 6   DRFLDHLWLQERLSANTLAAYRRDLNKIAVRLAGQGEDWLSADGSG-------LAAVVYH 58

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +K   RS  R+LS  K F  +L + +  +      +   K+   LP  ++E Q     
Sbjct: 59  PDEK--TRSQARALSACKRFYGWLLETEQLSNDPTEYLTAPKQERILPAIVSESQIE--- 113

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             +LL           R+ A+L L+Y  GLR+SEA+ LT   I   +  +   GKG K R
Sbjct: 114 --MLLAAPDTDSPHGLRDKALLELMYASGLRVSEAVKLTLGEIDLQRGLVVTVGKGGKQR 171

Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+       I  Y     P  L       LF G +   ++  +    + +     G+ 
Sbjct: 172 LVPMGEEASYWIERYLAQARPVLLKNARCDELFVGQKRNGISRQLAWMIVDKYAEAAGI- 230

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H+LRH+FATHL+++G DLR +QS+LGH  +STTQIYT+V ++     +  I  + 
Sbjct: 231 RHLSPHSLRHAFATHLVNHGADLRVVQSLLGHADISTTQIYTHVANER----LKNIVSEH 286

Query: 318 HPS 320
           HP 
Sbjct: 287 HPR 289


>gi|15893191|ref|NP_360905.1| site-specific tyrosine recombinase XerC [Rickettsia conorii str.
           Malish 7]
 gi|34222950|sp|Q92G55|XERC_RICCN RecName: Full=Tyrosine recombinase xerC
 gi|15620404|gb|AAL03806.1| integrase/recombinase [Rickettsia conorii str. Malish 7]
          Length = 305

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 115/311 (36%), Positives = 180/311 (57%), Gaps = 9/311 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++   +      W + L ++R  S  T+ SY  D + FL F+ +Y  E +TI  I+    
Sbjct: 1   MLDTSIQALINKWQKYLALQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADI 60

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             IR++++KR        S+ R LS +K+F ++L+K        I ++++ KK+  LP+A
Sbjct: 61  RLIRSWLAKRNCDNFTASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKA 120

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+E   +  +++  +      KW++ RN A+L L+Y  GLRISEALS+T  + + +   +
Sbjct: 121 LSEDDVVISLEH--IEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLH-LQNLEFI 177

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKG K RI+P LP  +  I +Y ++ P+ L  N   P+FRG +GK L P VF R + 
Sbjct: 178 RIIGKGSKERIIPWLPIAKNLITQYLEILPYKLGDNE--PIFRGKQGKKLQPPVFNRELI 235

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L+ + GLP   TAH+ RHSFA+HLL +G DLRS+Q +LGH  LSTTQ YT  + K+   
Sbjct: 236 KLKHFYGLPQHLTAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTKTSIKH--- 292

Query: 309 WMMEIYDQTHP 319
            +  +Y   +P
Sbjct: 293 -LEAVYTTAYP 302


>gi|281425134|ref|ZP_06256047.1| integrase/recombinase XerD [Prevotella oris F0302]
 gi|281400726|gb|EFB31557.1| integrase/recombinase XerD [Prevotella oris F0302]
          Length = 293

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 76/305 (24%), Positives = 140/305 (45%), Gaps = 15/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L  ER  S+LT+++Y  D R F  F            +   +    +R ++ +
Sbjct: 3   IDKFLDYLRFERNRSELTVKNYGDDLRSFEKFFRDLE----NPVSWESVDSDVVRNWMER 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S+ R LS ++SF ++   RK+  +  +  +   KK   LP+ L EK+   L
Sbjct: 59  MMDEGNNAASINRRLSALRSFYRFALSRKLVDKDPVHGITGPKKGKPLPQFLKEKEMDRL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++           + D R+ AI+   Y  G+R+SE   L  + +   +  L++ GK +K 
Sbjct: 119 LE----RKCWTRSFEDVRDRAIIMTFYETGIRLSELTGLDDKMVDFAEYQLKVTGKRNKQ 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ-RYIRQLRRYLGL 256
           RI+P    +   + +Y +    +++  +   LF    G+ ++  + + R  R L +   L
Sbjct: 175 RIIPFGEELCTTLRDYMECRDREVD-RLSEALFVTDEGQRMSASLVRERVKRSLSKVCTL 233

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FAT +L++   + S++ +LGH  LSTT+IYT+   +     +   Y  
Sbjct: 234 NKR-SPHVLRHTFATAMLNHKAGIESVKKLLGHESLSTTEIYTHTTFEQ----LKREYSI 288

Query: 317 THPSI 321
            HP  
Sbjct: 289 AHPRA 293


>gi|187931223|ref|YP_001891207.1| site-specific recombinase [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712132|gb|ACD30429.1| site-specific recombinase [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 292

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 86/310 (27%), Positives = 153/310 (49%), Gaps = 21/310 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+   N+L NL   +  S+ T+ +Y+ D  Q          + ++ + I  L++++I  +
Sbjct: 4   LEHINNFLDNLLYLKNYSQETINNYQRDLLQL--------NQALSDKNIISLTHSDILIW 55

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I K   Q    ++L+R LS ++SF  +L   +I +++    ++  K S  LP+ +N  + 
Sbjct: 56  IKKLHAQGNSPKTLQRKLSSVRSFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDEL 115

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D       + +  I+AR+ A   LLY CG+R+SE  S+  ++I   Q  +R+ GKG
Sbjct: 116 AYLLDI------NPSNDIEARDIACFDLLYSCGIRLSELSSVELKDISISQKNIRVTGKG 169

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +K RIV         +  +  +   D        LF    GK L     Q+ +    +  
Sbjct: 170 NKQRIVYFGTKTLSNLSRWLKIR--DSLKPSSDYLFISRDGKHLTNRSIQKRLEIFAQKY 227

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
                   H LRHSFA+H+L +  DL +++ +LGH  +S+TQIYT++N +     +  ++
Sbjct: 228 A-SRHIHPHMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQ----LASVF 282

Query: 315 DQTHPSITQK 324
           D+ HP   +K
Sbjct: 283 DKAHPRAKKK 292


>gi|157964965|ref|YP_001499789.1| site-specific tyrosine recombinase XerC [Rickettsia massiliae MTU5]
 gi|166918900|sp|A8F2V6|XERC_RICM5 RecName: Full=Tyrosine recombinase xerC
 gi|157844741|gb|ABV85242.1| Tyrosine recombinase XerC [Rickettsia massiliae MTU5]
          Length = 305

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 116/311 (37%), Positives = 180/311 (57%), Gaps = 9/311 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++   +      W + L ++R  S  T+ SY  D + FL F+ +Y  E +TI  I+    
Sbjct: 1   MLDTSIQALINKWQKYLVLQRNYSNHTVISYNNDLKHFLEFMNYYNSEFVTINHIKTADI 60

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             IR++++KR        S+ R LS +K+F ++L+K        I ++++ KK+  LP+A
Sbjct: 61  RLIRSWLAKRHCDNFTTSSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKA 120

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+E   +  +++  +      KW++ RN A+L L+Y  GLRISEALS+T  + + +   +
Sbjct: 121 LSEDDVVISLEH--IEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLH-LQNLEFI 177

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKG K RI+P LP  +  I +Y ++ P+ L  N   P+FRG +GK L P VF R + 
Sbjct: 178 RIIGKGSKERIIPWLPIAKNLITQYLEILPYKLGDNE--PIFRGKQGKKLQPPVFNRELI 235

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L+ + GLP   TAH+ RHSFA+HLL +G DLRSIQ +LGH  LSTTQ YT  + K+   
Sbjct: 236 KLKHFYGLPQHLTAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTSIKH--- 292

Query: 309 WMMEIYDQTHP 319
            +  +Y   +P
Sbjct: 293 -LEAVYTTAYP 302


>gi|241760809|ref|ZP_04758900.1| integrase/recombinase [Neisseria flavescens SK114]
 gi|241318706|gb|EER55258.1| integrase/recombinase [Neisseria flavescens SK114]
          Length = 298

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 82/309 (26%), Positives = 149/309 (48%), Gaps = 20/309 (6%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             + +L+ L +++G S+ T+ +Y  D  + +  L    E  +        +  +  A + 
Sbjct: 10  HLELYLKTL-LQQGKSEHTVSAYRRDLSELMRLLPDNLENGLP-------TRRDFVAVLK 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           K   + + + SL R LS  + +  +L + ++       NM+  +    LP+AL ++    
Sbjct: 62  KLSQKGLSESSLVRKLSVWRQYCSWLVQIEVMESDPTFNMKAPRLPERLPKALPQEPLNH 121

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           ++D+     +     +D R+ A+  L+YG GLR+SE   L    I+ D+  + ++GKG K
Sbjct: 122 ILDH-----APVDDELDVRDKAMFELMYGSGLRLSEIQGLNLDGIVLDEGWVSVKGKGGK 176

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R VPL+     A+ +Y  +    +    +  LF    G  L     Q+ ++     +G 
Sbjct: 177 QRQVPLVAKSIAALRDYLAVR---IAKEGEQALFTNKNGGRLGQRQIQKRLQAWAVRVGS 233

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H +RHS+ATHLL   GD+R++Q +LGH  LS TQ+YT ++     D +  +YD+
Sbjct: 234 ASHISPHMMRHSYATHLLQASGDIRAVQELLGHSNLSATQVYTKLDF----DHLARVYDE 289

Query: 317 THPSITQKD 325
            HP   +K 
Sbjct: 290 AHPRAKRKK 298


>gi|229587180|ref|YP_002845681.1| site-specific tyrosine recombinase XerC [Rickettsia africae ESF-5]
 gi|259710437|sp|C3PLU8|XERC_RICAE RecName: Full=Tyrosine recombinase xerC
 gi|228022230|gb|ACP53938.1| Tyrosine recombinase XerC [Rickettsia africae ESF-5]
          Length = 305

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 116/311 (37%), Positives = 180/311 (57%), Gaps = 9/311 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++   +      W + L ++R  S  T+ SY  D + FL F+ +Y  E +TI  I+    
Sbjct: 1   MLDTSIQALINKWQKYLVLQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADI 60

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             IR++++KR        S+ R LS +K+F ++L+K        I ++++ KK+  LP+A
Sbjct: 61  RLIRSWLAKRNCDNFTASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKA 120

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+E   +  +++  +      KWI+ RN A+L L+Y  GLRISEALS+T  + + +   +
Sbjct: 121 LSEDDVVISLEH--IEEYGNVKWIELRNKALLVLIYASGLRISEALSITKLH-LQNLEFI 177

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKG K RI+P LP  +  I +Y ++ P+ L  N   P+FRG +GK L P VF R + 
Sbjct: 178 RIIGKGSKERIIPWLPIAKNLITQYLEILPYKLGDNE--PIFRGKQGKKLQPPVFNRELI 235

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L+ + GLP   TAH+ RHSFA+HLL +G DLRS+Q +LGH  LSTTQ YT  + K+   
Sbjct: 236 KLKHFYGLPQHLTAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQSYTKTSIKH--- 292

Query: 309 WMMEIYDQTHP 319
            +  +Y   +P
Sbjct: 293 -LEAVYTTAYP 302


>gi|325104990|ref|YP_004274644.1| integrase family protein [Pedobacter saltans DSM 12145]
 gi|324973838|gb|ADY52822.1| integrase family protein [Pedobacter saltans DSM 12145]
          Length = 293

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 76/304 (25%), Positives = 143/304 (47%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   +  E+  S  T+ SY+ D  Q+  FL+           I   ++ ++R ++  
Sbjct: 3   LERFFNYISFEKKYSAHTVLSYQTDINQYQDFLSVIE------ADILSATHRDVRNWVVS 56

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
               +   R++ R +S +K+   +L + ++   + +  +   K + +LP  L  ++   L
Sbjct: 57  LMDDQKSSRTVNRKISALKTLYSFLLREELIEVNPMQKVLAPKIAKTLPVFLETEKLNAL 116

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D        E  +   R+  IL  L+G G+R+SE L L  +++     T+++ GKG+K 
Sbjct: 117 LDY---EGIFEEGFEGKRDKLILEFLFGTGVRLSELLGLREKDVDFGNKTVKVLGKGNKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RI+P+  S+  +I +Y       +  N    L    +G    P    R +++    +   
Sbjct: 174 RIIPMSESLICSIRDYLLKKKSGVIYNNSDALIVTNKGLQAYPEFIYRTVKRYLSIISSK 233

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FAT LL+ G D+ +I+ +LGH  L+ TQ+YT+    N  + +  IY Q 
Sbjct: 234 EKKSPHVLRHTFATALLNAGADINAIKELLGHASLAATQVYTH----NSIERIKTIYKQA 289

Query: 318 HPSI 321
           HP  
Sbjct: 290 HPKA 293


>gi|322435168|ref|YP_004217380.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321162895|gb|ADW68600.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 311

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 87/306 (28%), Positives = 146/306 (47%), Gaps = 19/306 (6%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
            L +ERGL   + ++Y  D  QF  FL       +        +  ++  F+ + R   +
Sbjct: 15  YLRVERGLRPNSCEAYGRDLLQFAEFLEKRDGLLVGA------TQQDVGEFLGQLRGHAV 68

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
             RS+ R LSG+K F K+L   K       LN+ +      LP+++ E + + +++   +
Sbjct: 69  ESRSVARKLSGLKGFYKWLLMDKRVRHDPTLNVASPSVWKILPKSMAESEVVGMLERTGV 128

Query: 144 HT-SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
              + +   I  R+ AIL LLY  GLR+ E  +L  +++  +    +++GKGDK RIVPL
Sbjct: 129 AARAADADGIALRDHAILELLYAGGLRVGEICALRVEDVRLEDQRAQVRGKGDKERIVPL 188

Query: 203 LPSVRKAILEYYDLCPFDLNLNI----QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
                 A+  Y D     L        +  +F  +RG+ L        +R          
Sbjct: 189 GRQACDALAIYLDRGRPGLARGAGAGMRREMFLSVRGRALTRQWVWEMVRGCSE----NG 244

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRHS ATH++ +G DLRS+Q+ LGH  ++TTQ+YT+V   +    + E++   H
Sbjct: 245 DASPHKLRHSCATHMVEHGADLRSVQTFLGHADIATTQVYTHVALGH----LKEVHRLHH 300

Query: 319 PSITQK 324
           P   ++
Sbjct: 301 PRAKRR 306


>gi|109900374|ref|YP_663629.1| phage integrase [Pseudoalteromonas atlantica T6c]
 gi|109702655|gb|ABG42575.1| tyrosine recombinase XerC subunit [Pseudoalteromonas atlantica T6c]
          Length = 298

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 81/306 (26%), Positives = 150/306 (49%), Gaps = 20/306 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +   L+ ER L+  ++++Y+               + +TI    +L+   +R  +++ R
Sbjct: 13  KYFDYLKYERNLAAKSIENYQRQLASIC--------QALTITAWPELTVDHVRQVLNQAR 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q +  RS+   LS ++ +  YL + ++ + +    ++  K+ + LP+ LN  +      
Sbjct: 65  RQGLSPRSIALRLSALRGYCAYLVELEVLSSNPAKAVQAPKQGSPLPKQLNVDEM----- 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              L    +   +  R+ A+L L Y CGLR++E   L  +++ DD   LR+ GKG K RI
Sbjct: 120 -HQLLDFDDDSLLGVRDKAMLELTYSCGLRLAELADLNLKSLQDD-GQLRVIGKGSKERI 177

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +P+  +  K + E+  +    L    +  LF     + ++     + ++   +   L   
Sbjct: 178 LPVGKTALKCLGEWLKVRGV-LADGDEPALFLSKHRRRISHRQIAKRMQLWAKQQHLDQD 236

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRHSFATH+L + GDLR +Q +LGH  LSTTQ+YT++N ++    +  +YD  HP
Sbjct: 237 INPHKLRHSFATHILESSGDLRGVQELLGHANLSTTQVYTHLNFQH----LASVYDTAHP 292

Query: 320 SITQKD 325
              ++ 
Sbjct: 293 RAKRRK 298


>gi|254476039|ref|ZP_05089425.1| tyrosine recombinase XerD [Ruegeria sp. R11]
 gi|214030282|gb|EEB71117.1| tyrosine recombinase XerD [Ruegeria sp. R11]
          Length = 332

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 85/316 (26%), Positives = 140/316 (44%), Gaps = 20/316 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+    +L     + G +  TL +Y  D +    +LA     +I  +T    S  +I ++
Sbjct: 8   LQWISTFLDAQAADLGAAHNTLLAYGRDLKDVAAWLAA---RQIGFET---ASRDQIESY 61

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +     + +   +  R LS IK   ++        ++  + ++   +  SLP+ L   + 
Sbjct: 62  LIACDAEGLSRATRARRLSAIKQIYRFAFDEGWRDDNPAIQIKGPGRQKSLPKTLEVIEV 121

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D      S        RN+ ++ LLY  G+R+SE + L       D   L + GKG
Sbjct: 122 DKLLDA--ARQSGRNLPDRIRNTCLMELLYATGMRVSELVGLPVTAARGDPRMLLVLGKG 179

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFD------LNLNIQLPLFRGI-RGKPLNPGVFQRYI 247
            K R+VPL P  R A+  +                     LF    +   L    F   I
Sbjct: 180 GKERMVPLSPPARDALAAWLAHRDKAEEAAVAKGAPPSRYLFPSRGKSGHLTRHRFYLLI 239

Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           ++     G+ P + + HTLRH+FATHLL+NG DLR+IQ++LGH  ++TT+IYT+V     
Sbjct: 240 KEFAVTAGISPEAVSPHTLRHAFATHLLANGADLRAIQALLGHADIATTEIYTHVLDAR- 298

Query: 307 GDWMMEIYDQTHPSIT 322
              + E+  + HP   
Sbjct: 299 ---LSELVLEHHPLAR 311


>gi|229491429|ref|ZP_04385253.1| site-specific tyrosine recombinase XerC [Rhodococcus erythropolis
           SK121]
 gi|229321714|gb|EEN87511.1| site-specific tyrosine recombinase XerC [Rhodococcus erythropolis
           SK121]
          Length = 308

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 82/320 (25%), Positives = 146/320 (45%), Gaps = 14/320 (4%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
            + LP  +S  L      + ++L + RG S+ T+++Y  D R  L   +  +E       
Sbjct: 2   TDALPASLSVHL----DAYAEHLRLSRGRSEHTIRAYVGDARALLTHFSAGSEN----AD 53

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           + +L  + +R++++ +        ++ R  S  + F  +L +    +      +      
Sbjct: 54  LDRLDLSVMRSWLAAQNAVGTARTTVARRASSARGFTAWLAQTGRISVDPGTRLAAPPAR 113

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            +LP  L + QAL  +D        + + +  R+  I+ LLY  G+R+ E   L  +++ 
Sbjct: 114 RTLPTVLRQSQALDAMDAAESGA-QQQEPLALRDRLIVELLYSTGIRVGELCGLDVESVD 172

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPG 241
            D+  LR+ GKG+K R VP       A+  + +     L +      L  G+RG  L+  
Sbjct: 173 ADRRLLRVLGKGNKERSVPYGLPAESALNGWLEHGRPALCSDRSGRALLLGVRGGRLDQR 232

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             +  + +    +        H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V
Sbjct: 233 QARSVVHETMAAIPGAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHASLATTQLYTHV 292

Query: 302 NSKNGGDWMMEIYDQTHPSI 321
           + +     +  ++DQ HP  
Sbjct: 293 SVER----LRSVHDQAHPRA 308


>gi|157827055|ref|YP_001496119.1| site-specific tyrosine recombinase XerD [Rickettsia bellii OSU
           85-389]
 gi|157802359|gb|ABV79082.1| site-specific tyrosine recombinase XerD [Rickettsia bellii OSU
           85-389]
          Length = 305

 Score =  231 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 90/319 (28%), Positives = 151/319 (47%), Gaps = 26/319 (8%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ++    +L+ L  ER LSK ++ SY+ D   F  +LA     ++ I      +   IR +
Sbjct: 1   MEFISQFLEMLLAERALSKNSILSYKRDLLDFHNYLAKQKLSELNI------TTDNIRNW 54

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +       +  RS+ R +S IKS+ ++L     T  + +LN+   K  N LP  L+    
Sbjct: 55  VEYLAENGLQARSINRKISTIKSYYEFLISENHTNLNPLLNIDLPKYQNKLPEILSIDDI 114

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ------STL 188
            +L++      S E   ++    A+++LLY  GLR+SE +SL   +I+ ++         
Sbjct: 115 KSLLEYCSQDISPEGARLN----AMIHLLYASGLRVSELVSLKLSDILSNKVSREVKKIF 170

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIRG-KPLNPGVFQ 244
            + GKG+K RI+ +      ++++Y  +    +N       + LF        +    F 
Sbjct: 171 SVLGKGNKERIIVINEPAINSLVKYLVVRDNFVNKTKPKNLIYLFPSSAAAGYMTRQNFA 230

Query: 245 RYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             ++    Y GL P   + H LRHSFA+HLL  G DLR IQ +LGH  +STTQIYT++ +
Sbjct: 231 ILLKSAALYAGLNPEHISPHVLRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQT 290

Query: 304 KNGGDWMMEIYDQTHPSIT 322
            +    ++      HP   
Sbjct: 291 NHLKKALL-----HHPLSK 304


>gi|238789383|ref|ZP_04633169.1| Tyrosine recombinase [Yersinia frederiksenii ATCC 33641]
 gi|238722526|gb|EEQ14180.1| Tyrosine recombinase [Yersinia frederiksenii ATCC 33641]
          Length = 263

 Score =  231 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 70/269 (26%), Positives = 132/269 (49%), Gaps = 12/269 (4%)

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
            E++ +   + L   ++R+ +S+ +   +   SL   LS ++SFL +L  + +   +   
Sbjct: 4   GEQMGLAHWQTLDAAQVRSLVSRSKRAGLHSSSLALRLSALRSFLDWLVSQGVLQANPAK 63

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            +   +    LP+ ++  +   L+D  L         +  R+ A+L ++YG GLR+SE +
Sbjct: 64  GISTPRSGRHLPKNIDVDEVDKLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELV 117

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
            +  +++      + + GKG K R VP+  +    +  +  L   +L       +F    
Sbjct: 118 GMNCKHVDLASGEVWVMGKGSKERKVPIGKTAVTWLEHWLALR--ELFEPQDDAIFLANT 175

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           GK ++    Q+   +     G+      H LRHSFATH+L + GDLR++Q +LGH  L+T
Sbjct: 176 GKRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTT 235

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
           TQIYT+++ ++    +  +YD  HP   +
Sbjct: 236 TQIYTHLDFQH----LATVYDAAHPRAKR 260


>gi|332304595|ref|YP_004432446.1| tyrosine recombinase XerC [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332171924|gb|AEE21178.1| tyrosine recombinase XerC [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 298

 Score =  231 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 82/316 (25%), Positives = 150/316 (47%), Gaps = 20/316 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
               L      +   L+ ER L+  ++++Y+   RQF         + ++I +   LS  
Sbjct: 3   AQPSLQPLLDKYFDYLKYERNLAAKSIENYQ---RQFASIC-----QTLSISSWSALSVE 54

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R  ++  R Q +  RS+   LS ++ +  YL + ++ + +    ++  K+   LP+ L
Sbjct: 55  HVRQVLNHARRQGLSPRSIALRLSALRGYCAYLVELEVLSSNPAKAVQAPKQGKPLPKQL 114

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           N  +         L    +   +  R+ A+L L Y CGLR++E   L   ++ DD   LR
Sbjct: 115 NVDEM------HQLLDFDDDSLLAIRDKAMLELTYSCGLRLAELADLNLNSLQDD-GQLR 167

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG K R++P+       + ++  +   +L    +  LF     + ++     + ++ 
Sbjct: 168 VMGKGSKERLLPVGKKALTCVGQWLKVR-GELADGNEPALFLSKHRRRISHRQIAKRMQL 226

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +   L      H LRHSFATH+L + GDLR +Q +LGH  LSTTQ+YT++N ++    
Sbjct: 227 WAKQQHLDQDINPHKLRHSFATHILESSGDLRGVQELLGHANLSTTQVYTHLNFQH---- 282

Query: 310 MMEIYDQTHPSITQKD 325
           +  +YD  HP   ++ 
Sbjct: 283 LASVYDTAHPRAKRRK 298


>gi|239947482|ref|ZP_04699235.1| tyrosine recombinase XerD [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921758|gb|EER21782.1| tyrosine recombinase XerD [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 306

 Score =  231 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 92/317 (29%), Positives = 152/317 (47%), Gaps = 27/317 (8%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ++    +L+ L  ER LSK ++ SY+ D   F  +LA     ++ I      +   +R +
Sbjct: 1   MEFISQFLEMLLAERALSKNSILSYKRDLFDFQNYLAKQKLSELNI------TTENVRDW 54

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I    T  +  RS+ R +S IKS+ ++L        + +LN+   K  N LP  L+  Q 
Sbjct: 55  IEYLATNDLQARSINRKISTIKSYYEFLISENHIAFNPVLNVDLPKYQNKLPEILSIDQI 114

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-------QST 187
            +L++    H S +      R +A+++LLY  GLR+SE +SL   +I+ +       +  
Sbjct: 115 KSLLE----HCSQDNSPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNKTSKGEVRKI 170

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIR-GKPLNPGVF 243
             + GKG+K R++ +      +I +Y  +    +N       + LF        +    F
Sbjct: 171 FSVLGKGNKERVIVINEQAVISIAKYLAIRDVFVNKAKPKNLIYLFPSSALAGYMTRQNF 230

Query: 244 QRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              ++    Y GL P   + H LRHSFA+HLL  G DLR IQ +LGH  +STTQIYT++ 
Sbjct: 231 AILLKSAALYAGLNPEHISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQ 290

Query: 303 SKNGGDWMMEIYDQTHP 319
           + +    ++      HP
Sbjct: 291 TNHLKKALL-----HHP 302


>gi|332882567|ref|ZP_08450179.1| putative tyrosine recombinase XerC [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332679367|gb|EGJ52352.1| putative tyrosine recombinase XerC [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 332

 Score =  231 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 145/305 (47%), Gaps = 9/305 (2%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              ++  L IE   S  T+++Y+ D R F  F+    E++     + +    +I+ +I  
Sbjct: 25  INAFIIYLSIEMKYSIHTVEAYKHDLRAFERFIKSECEKEEEDCPLERADQEDIKKWIIS 84

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALT 136
              Q +  RS+ R LS +K++  +LKK K    S     +  LK         +E +   
Sbjct: 85  LSNQSMSFRSINRKLSALKTYYTFLKKTKQIETSPFERGIFLLKTEKKNKLPFSEAEIEK 144

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           ++       S ++ + + R+ AI+  LY  G+R SE   L  Q++  +Q  ++I GKGDK
Sbjct: 145 VLSYF----SSKSSFDEVRDRAIIETLYATGMRRSELTGLKLQDLDLEQKQIKISGKGDK 200

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R +P++P +   + EY  L     N   +  LF    GK + P +  R I      +  
Sbjct: 201 ERYIPVIPELEATLKEYLRLREEIANKKSEDFLFLVKNGKKIYPTLVYRIINSYFSAVTS 260

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRHSFA+HLL NG DL +++ +LGH  L++TQ+YTN +       +   Y +
Sbjct: 261 KKDVSPHILRHSFASHLLDNGADLNTVKELLGHSSLASTQVYTNTS----LVELKRQYKK 316

Query: 317 THPSI 321
            HP  
Sbjct: 317 AHPRA 321


>gi|317125403|ref|YP_004099515.1| tyrosine recombinase XerC subunit [Intrasporangium calvum DSM
           43043]
 gi|315589491|gb|ADU48788.1| tyrosine recombinase XerC subunit [Intrasporangium calvum DSM
           43043]
          Length = 319

 Score =  231 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 84/315 (26%), Positives = 149/315 (47%), Gaps = 10/315 (3%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P      L      + ++L  ERG S+ T ++Y  D      F+  +      +  + +L
Sbjct: 15  PAPEPAGLEAVLSEFTRHLRSERGRSEHTTRAYVSDINHLFSFVVAH-----GLSDLGEL 69

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
              ++R+++  +        ++ R  +  ++FLK+  +         L +   ++S +LP
Sbjct: 70  RLADLRSWLGAQADGGAARSTIARRAAAARTFLKWASRSGRIETDPSLRLVAPRRSRTLP 129

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             L +++A  ++D   +    +   I  R+ A+L LLY  G+R+ E +SL   ++   + 
Sbjct: 130 DVLKQREASAMLDVAAVRA-DDADPIHVRDRAVLELLYASGIRVGELVSLDLDDLDLRER 188

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           T+R+ GKG K R+VP       A+ E+       +       LF G RG  ++P   +  
Sbjct: 189 TVRVMGKGAKERVVPFGVPAASALQEWLAARRLLVGPRSGPALFLGRRGARVDPRQVRSL 248

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           + ++  +L        H LRHS ATHLL  G DLR +Q +LGH  L+TTQIYT+V+ +  
Sbjct: 249 VHEVLSHLPDAPDLGPHGLRHSAATHLLEGGADLRMVQEVLGHASLATTQIYTHVSVER- 307

Query: 307 GDWMMEIYDQTHPSI 321
              + + Y+Q HP  
Sbjct: 308 ---LRKSYEQAHPRA 319


>gi|332678799|gb|AEE87928.1| Tyrosine recombinase xerC [Francisella cf. novicida Fx1]
          Length = 292

 Score =  231 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 86/310 (27%), Positives = 153/310 (49%), Gaps = 21/310 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+   N+L NL   +  S+ T+ +Y+ D  Q          + ++ + I  L++++I  +
Sbjct: 4   LEHINNFLDNLIYLKNYSQETINNYQRDLLQL--------NKVLSDKNIISLTHSDILIW 55

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I K   Q    ++L+R LS ++SF  +L   +I +++    ++  K S  LP+ +N  + 
Sbjct: 56  IKKLHAQGNSPKTLQRKLSSVRSFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDEL 115

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D       + +  I+AR+ A   LLY CG+R+SE  S+  ++I   Q  +R+ GKG
Sbjct: 116 AYLLDV------NPSNDIEARDIACFDLLYSCGIRLSELSSVELKDISISQKNIRVTGKG 169

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +K RIV         +  +  +   D        LF    GK L     Q+ +    +  
Sbjct: 170 NKQRIVYFGTKTLSNLNRWLKIR--DSLKPSSDYLFISRDGKHLTNRSIQKRLEIFAQKY 227

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
                   H LRHSFA+H+L +  DL +++ +LGH  +S+TQIYT++N +     +  ++
Sbjct: 228 A-SRHIHPHMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQ----LASVF 282

Query: 315 DQTHPSITQK 324
           D+ HP   +K
Sbjct: 283 DKAHPRAKKK 292


>gi|255326004|ref|ZP_05367092.1| tyrosine recombinase XerC [Rothia mucilaginosa ATCC 25296]
 gi|255296895|gb|EET76224.1| tyrosine recombinase XerC [Rothia mucilaginosa ATCC 25296]
          Length = 358

 Score =  231 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 92/328 (28%), Positives = 154/328 (46%), Gaps = 17/328 (5%)

Query: 2   EGNNLPEI---VSFELLKE-RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK 57
           E + LPE    VS E+ +     + + L  E+  S+ T++SY  D   F  ++A      
Sbjct: 40  ESSALPESALGVSGEVFRPVLDRFERFLRYEKHRSEETIRSYISDLEGFFGYMARR---- 95

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
             ++ +  +  + IR ++     ++    ++ R  S +++F  + ++ ++   +    MR
Sbjct: 96  -GVRHLDSIDASPIREWLGSLHLRQAARSTVARRGSTLRTFFTWAQEEELVHANPTRGMR 154

Query: 118 NLKKSNSLPRALNEKQALTLVDN-VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             K+ N LP  L+ +Q   L+                 R  A++ +LY  G+RISE   L
Sbjct: 155 TPKRENHLPPVLSREQMNQLLTTLQERRAQDPRDARLLRLEAVVEVLYASGMRISELTGL 214

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC---PFDLNLNIQLPLFRGI 233
             Q++     T+R+ GKG+K R+VPL     KA+  +                  LF G 
Sbjct: 215 DLQSVDRANKTVRVLGKGNKERVVPLGTPALKALNRWVSYGRPQWIPEGAQGVTALFIGP 274

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           RG   N    +  + +L R +    ++ AH LRHS ATHL+  G D+RS+Q +LGH  L+
Sbjct: 275 RGGRANARQIREDLTRLLRTVENTQASGAHVLRHSAATHLVDGGADIRSVQELLGHSSLA 334

Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           TTQIYT+V+ K     + E Y + HP  
Sbjct: 335 TTQIYTHVSMKR----LAETYARAHPRA 358


>gi|238784731|ref|ZP_04628734.1| Tyrosine recombinase [Yersinia bercovieri ATCC 43970]
 gi|238714327|gb|EEQ06336.1| Tyrosine recombinase [Yersinia bercovieri ATCC 43970]
          Length = 267

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 71/269 (26%), Positives = 133/269 (49%), Gaps = 12/269 (4%)

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
            E++ +   + L   ++R+ +S+ +   +   SL   LS ++SFL +L  + +   +   
Sbjct: 8   GEQMGLAHWQTLDAAQVRSLVSRSKRAGLHASSLALRLSALRSFLNWLVSQGVMQANPAK 67

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            +   +    LP+ ++  +   L+D  L         +  R+ A+L ++YG GLR+SE +
Sbjct: 68  GVSTPRSGRHLPKNIDVDEVDKLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELV 121

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
            +  +++      + + GKG K R VP+  +    +  Y+ L   +L       +F    
Sbjct: 122 GMNCKHVDLASGEVWVMGKGSKERKVPIGKTAVTWL--YHWLALRELFEPQDDAIFLANT 179

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           GK ++    Q+   +     G+      H LRHSFATH+L + GDLR++Q +LGH  L+T
Sbjct: 180 GKRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTT 239

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
           TQIYT+++ ++    +  +YD  HP   +
Sbjct: 240 TQIYTHLDFQH----LATVYDAAHPRAKR 264


>gi|34581137|ref|ZP_00142617.1| integrase/recombinase [Rickettsia sibirica 246]
 gi|28262522|gb|EAA26026.1| integrase/recombinase [Rickettsia sibirica 246]
          Length = 305

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 115/311 (36%), Positives = 180/311 (57%), Gaps = 9/311 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++   +      W + L ++R  S  T+ SY  D + FL F+ +Y  E +TI  I+    
Sbjct: 1   MLDTSIQALINKWQKYLVLQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADI 60

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             IR++++KR        S+ R LS +K+F ++L+K        I ++++ KK+  LP+A
Sbjct: 61  RLIRSWLAKRNCDNFTASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKA 120

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+E   +  +++  +      KW++ RN A+L L+Y  GLRISEALS+T  + + +   +
Sbjct: 121 LSEDDVVISLEH--IEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLH-LQNLEFI 177

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKG K RI+P LP  +  I +Y ++ P+ L  N   P+FRG +GK L P VF R + 
Sbjct: 178 RIIGKGSKERIIPWLPIAKNLITQYLEILPYKLGDNE--PIFRGKQGKKLQPPVFNRELI 235

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L+ + GLP   TAH+ RHSFA+HLL +G DLRS+Q +LGH  LSTTQ YT  + K+   
Sbjct: 236 KLKHFYGLPQHLTAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTKTSIKH--- 292

Query: 309 WMMEIYDQTHP 319
            +  +Y   +P
Sbjct: 293 -LEAVYTNAYP 302


>gi|333029648|ref|ZP_08457709.1| Tyrosine recombinase xerC [Bacteroides coprosuis DSM 18011]
 gi|332740245|gb|EGJ70727.1| Tyrosine recombinase xerC [Bacteroides coprosuis DSM 18011]
          Length = 309

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 78/309 (25%), Positives = 145/309 (46%), Gaps = 13/309 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E +     ++  L  ER  S  T+++Y  D  QF   + F +EE     ++++L+   +R
Sbjct: 14  EAMIYLDRFIDYLNYERNYSSKTVKAYRNDIEQFFQDMCFNSEE----CSLKELNVYNVR 69

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +++     Q     S+KR LS ++ F +YL K        +  +   K   +LP  +  K
Sbjct: 70  SWMVSLMDQGYSTASVKRKLSSLRVFSRYLLKIGEIKSDKLKLVEGPKSGKNLPEFIQAK 129

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L++        E  +   R+  ++ + Y  G+R++E + L   ++      +++ G
Sbjct: 130 DMDKLLEGEFF----EKNFEGFRDKLMIDMFYSTGIRLAELVGLNDSDVDLVSRQIKVLG 185

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG+K R++P   S+  +I EY       +  N     F    G  +   +  + ++    
Sbjct: 186 KGNKERVIPFGSSLADSICEYLKERNTSIE-NRSGAFFIRSNGLRVYRNLVYKSVQSSLS 244

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            +   +  + H LRHSFAT++L+NG DL+ I+ ILGH  LS T++YT+   K     + +
Sbjct: 245 TISTLVKCSPHVLRHSFATNMLNNGADLQVIKEILGHTSLSATEVYTHTTFKE----LKK 300

Query: 313 IYDQTHPSI 321
           +Y+Q HP  
Sbjct: 301 VYNQAHPRA 309


>gi|261400435|ref|ZP_05986560.1| tyrosine recombinase XerD [Neisseria lactamica ATCC 23970]
 gi|313668771|ref|YP_004049055.1| integrase/recombinase [Neisseria lactamica ST-640]
 gi|269209883|gb|EEZ76338.1| tyrosine recombinase XerD [Neisseria lactamica ATCC 23970]
 gi|313006233|emb|CBN87695.1| putative integrase/recombinase [Neisseria lactamica 020-06]
          Length = 291

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 82/300 (27%), Positives = 142/300 (47%), Gaps = 20/300 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L ++R LS+ TL SY  D  +    L+         +T+     T++ A +     Q
Sbjct: 10  LETLWLDRRLSRNTLDSYRRDLEKIARRLSLCG------KTLADAEETDLAAAVYADGEQ 63

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
           +    S  R+LS  K    +++   +  ++    ++  K   ++P  + E+Q   L+D  
Sbjct: 64  R---SSQARALSACKRLYAWMEWEGMRADNPTRLLKPPKTDRNIPPLITEQQVSRLLDAP 120

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
              T H       R+ A+L L+Y  GLR+SEA+ L   N+  D+  +   GKGDK R+VP
Sbjct: 121 DTETPH-----GLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVP 175

Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +       +  YY    P  L       LF   +   ++  +    +++     G+    
Sbjct: 176 MGQESAYWVGRYYTEARPVLLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIG-HI 234

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H+LRH+FATHL+ +G DLR +Q +LGH  L+TTQIYT++ +      + ++  + H  
Sbjct: 235 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHIANVR----LQKVVKEHHSR 290


>gi|254368999|ref|ZP_04985012.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121920|gb|EDO66090.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 292

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 85/310 (27%), Positives = 153/310 (49%), Gaps = 21/310 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+   N+L NL   +  S+ T+ +Y+ D  Q          + ++ + I  L++++I  +
Sbjct: 4   LEHINNFLDNLLYLKNYSQETINNYQRDLLQL--------NQALSDKNIISLTHSDILIW 55

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I +   Q    ++L+R LS ++SF  +L   +I +++    ++  K S  LP+ +N  + 
Sbjct: 56  IKRLHAQGNSPKTLQRKLSSVRSFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDEL 115

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D       + +  I+AR+ A   LLY CG+R+SE  S+  ++I   Q  +R+ GKG
Sbjct: 116 AYLLDI------NPSNDIEARDIACFDLLYSCGIRLSELSSVELKDISISQKNIRVTGKG 169

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +K RIV         +  +  +   D        LF    GK L     Q+ +    +  
Sbjct: 170 NKQRIVYFGTKTLSNLNRWLKIR--DSLKPSSDYLFISRDGKHLTNRSIQKRLEIFAQKY 227

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
                   H LRHSFA+H+L +  DL +++ +LGH  +S+TQIYT++N +     +  ++
Sbjct: 228 A-SRHIHPHMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQ----LASVF 282

Query: 315 DQTHPSITQK 324
           D+ HP   +K
Sbjct: 283 DKAHPRAKKK 292


>gi|323483868|ref|ZP_08089245.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14163]
 gi|323692871|ref|ZP_08107096.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14673]
 gi|323402822|gb|EGA95143.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14163]
 gi|323503046|gb|EGB18883.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14673]
          Length = 282

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 130/287 (45%), Gaps = 12/287 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++ E   +++ L+  + +S+ T+ SY  D  Q   ++      +  I    +++ T + +
Sbjct: 1   MVTEIDIFIKYLQEVKKMSRNTVLSYHRDLLQMASYMG-----ERGITEAGKVTKTSLTS 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +I     +     ++ R L+ +K+F  Y         +    +   K     P  L+ ++
Sbjct: 56  YILFMEKEGKATTTISRMLASMKAFFHYEFSEGKIRRNPAELVHAPKIEKKAPVILSVEE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
             +L+      +S E +     + A+L LLY  G+R+SE  SL   +I  +   +  +  
Sbjct: 116 VTSLLKQPSGRSSKEIR-----DKAMLELLYATGIRVSELTSLKLTDINMNIGFITCRD- 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G K R +P     + A+ +Y +    +L        LF    G  ++   F + I+    
Sbjct: 170 GGKDRTIPFSRVAKGAMEDYIENARSELTRKKESDWLFVNCNGGQMSRQGFWKIIKFYGD 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
             G+    T HTLRHSFA HL+  G D++++Q ILGH  ++TTQ+Y 
Sbjct: 230 KAGIESDITPHTLRHSFAAHLIGGGADMKAVQVILGHSDVATTQMYA 276


>gi|291515062|emb|CBK64272.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 300

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 96/305 (31%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR- 78
           ++++ LE ER  S LT+++Y  D  QFL +L             ++++  +IR +I  R 
Sbjct: 4   DFVRYLEAERRYSPLTVRNYRHDVEQFLAWLGVDDARF----EPQRITTDDIREWILYRT 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            T ++   S+ R +S +++  ++L +        +  + +L+ S  LP  + E +   +V
Sbjct: 60  ETGRVSAASMNREISSLRALFRWLLRTGAVGRDVVHPIPSLRTSQRLPAFVPESRMNGIV 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                 +     ++  RNS I+ LLY CGLR++E + +   +   D S+LRI+GKGDK R
Sbjct: 120 SECECDSED---FVRERNSLIILLLYTCGLRLAELVGIDRDDFSADFSSLRIRGKGDKER 176

Query: 199 IVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           IVP+L  VR+ IL Y  L     + ++ +  LF   +GK ++     R +++     G+ 
Sbjct: 177 IVPMLEFVREKILHYIGLIERQNICISSEKALFLTHKGKRISRTAVYRTVQEELDRAGVQ 236

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FATHLL++G D+R IQ +LGH  L  TQ+YT+    N    + EIY + 
Sbjct: 237 GKKSPHVLRHTFATHLLNSGADMREIQELLGHASLQATQVYTH----NSIARLREIYAKA 292

Query: 318 HPSIT 322
           HP   
Sbjct: 293 HPREK 297


>gi|145594467|ref|YP_001158764.1| site-specific tyrosine recombinase XerD [Salinispora tropica
           CNB-440]
 gi|145303804|gb|ABP54386.1| tyrosine recombinase XerD [Salinispora tropica CNB-440]
          Length = 325

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 94/333 (28%), Positives = 155/333 (46%), Gaps = 22/333 (6%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M     P+  +  L +  + +L +L +ERGL+  TL SY  D   +L  LA      I +
Sbjct: 1   MTAEAEPD-PAPALRRAVRGYLDHLAVERGLAANTLASYRRDLAHYLDTLA-----SIGV 54

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSL-----KRSLSGIKSFLKYLKKRKITTESNILN 115
             +  ++  ++ A +++ R    G R L      R++S ++   ++  +  +T      +
Sbjct: 55  TDLASVAPGQVEAHLARLRVGNEGRRPLAASSAARAVSAVRGLHRFALREGLTGADPSRD 114

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNV-LLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           +R       LPRAL     + L++ V  +  +     +  R+ A+L  LYG G RISEA+
Sbjct: 115 VRPPAPPRRLPRALPVDDVIRLLEAVGPVSAAGGQAPLGLRDRALLEFLYGTGARISEAV 174

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRG 232
                ++  D   + ++GKG + R+VP+      A+  Y       L         +F  
Sbjct: 175 GAAVDDLDLDAGAVLLRGKGGRNRLVPIGGYAVAALHAYLVRARPGLAAAGGGTPRVFLN 234

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGL----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
            RG PL+       +R   R  GL    P + + HTLRHS+ATHLL  G D+R +Q +LG
Sbjct: 235 SRGGPLSRQGAWTILRNAARRAGLSDVGPQAVSPHTLRHSYATHLLDGGADVRVVQELLG 294

Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           H  ++TTQ+YT V  +     + E+Y   HP  
Sbjct: 295 HASVTTTQVYTLVTVER----LREVYATAHPRA 323


>gi|159044160|ref|YP_001532954.1| tyrosine recombinase [Dinoroseobacter shibae DFL 12]
 gi|157911920|gb|ABV93353.1| tyrosine recombinase [Dinoroseobacter shibae DFL 12]
          Length = 308

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 79/317 (24%), Positives = 132/317 (41%), Gaps = 20/317 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L     +L     E   ++ T  +Y  D   F   +              Q+   +I  +
Sbjct: 3   LHWIDAFLDAQAAELNAAENTRLAYARDLMDFQGHIRRRG------LDFDQVQRADIETY 56

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +       +   +  R LS I+   ++  +    T++  L ++   ++  LP+ L+E   
Sbjct: 57  LIACSDAGLSQATRARRLSAIRQLYRFAYEEGWRTDNPSLQIKGPGRAKRLPKTLSEADV 116

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+       +  +     RN+ +L LLY  GLR++E   L    +  D   + ++GKG
Sbjct: 117 DRLLAA--ARNTGRSPSDRQRNACMLELLYATGLRVTELCGLPVAAVRGDPHLILVRGKG 174

Query: 195 DKIRIVPLLPSVRKAILEYYDLCP------FDLNLNIQLPLFRGI-RGKPLNPGVFQRYI 247
            K R+VPL    R  +  +  +                  LF    +   L    F   I
Sbjct: 175 GKERMVPLSTPARTELQAWLKVRDAAEQTAISKGAAPSKYLFPSRGKLGHLTRHRFYALI 234

Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           + +    G+ P   T HTLRH+FATHLL+ G DL SIQ++LGH  ++TT+IYT+V     
Sbjct: 235 KDIAVAAGVDPSGVTPHTLRHAFATHLLARGADLMSIQALLGHADVATTEIYTHVLDAR- 293

Query: 307 GDWMMEIYDQTHPSITQ 323
              + E+    HP  T+
Sbjct: 294 ---LRELVLTHHPLATK 307


>gi|320535374|ref|ZP_08035488.1| putative tyrosine recombinase XerC [Treponema phagedenis F0421]
 gi|320147776|gb|EFW39278.1| putative tyrosine recombinase XerC [Treponema phagedenis F0421]
          Length = 307

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 82/313 (26%), Positives = 138/313 (44%), Gaps = 25/313 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  +   +  SK T+ SY  D   F  +L     +        +L  ++IR F++ 
Sbjct: 7   FEKYLDYIAGIKHFSKQTVISYRNDLLLFDSWLTDSELK------FTELGVSDIRIFVAD 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R +K    S+ R L+ ++   +Y  +  +   +  L ++NLK    LPR L  +QA   
Sbjct: 61  LREKKFAPASINRMLATVRGLYRYAVRLNLCQTNPALAVKNLKLPKKLPRFLFPEQAKEF 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            +  +    ++    +AR++A+  +LY  G R+SE   L  +NI    ++  + GKG K 
Sbjct: 121 YNLPV----NKGLLWEARDAALFSVLYSTGCRVSEIAGLDMKNIDSKLNSAIVLGKGSKE 176

Query: 198 RIVPLLPSVRKAILEYYDLC-----------PFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           R V      ++ +  Y                 D     +  LF   RG PL+    Q  
Sbjct: 177 RKVFFADFAKEYLQIYLAERNELLKKHAGEIQRDKTGRKRDALFINQRGMPLSVQGIQYI 236

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           I +           + H  RHSFA+ L+S G D+R +Q +LGH  +STTQ YT+V  +  
Sbjct: 237 IDRYAAVSPDLKKISPHVFRHSFASTLISRGADIRVVQEMLGHENISTTQKYTHVTPE-- 294

Query: 307 GDWMMEIYDQTHP 319
              +  +Y + HP
Sbjct: 295 --LLQMLYHRAHP 305


>gi|296171500|ref|ZP_06852764.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295894062|gb|EFG73823.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 298

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 83/309 (26%), Positives = 136/309 (44%), Gaps = 12/309 (3%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +    + + + L ++ G S  T ++Y  D R  L FLA           +  LS   +R+
Sbjct: 1   MEAILEEFDEYLALQCGRSAHTRRAYLGDLRSLLTFLADRG------AGLDGLSLPLLRS 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++S          +L R  S +K+F  +  +R +        ++  K   +LP  L + Q
Sbjct: 55  WLSAGAAAGAARTTLARRTSAVKAFTAWAARRGLLAADPGARLQVPKAHRTLPAVLRQDQ 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           AL  +       + +   +  R+  I+ +LY  G+R+SE   L   ++      +R+ GK
Sbjct: 115 ALDAM-AAAKSGAQQGDPMALRDRLIVEMLYATGIRVSELCGLDVDDVDTGHRLVRVLGK 173

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRR 252
           G+K R VP       A+  + D     L      P L  G RG+ L+    +  + Q   
Sbjct: 174 GNKQRTVPFGMPAADALRAWLDDGRPALVTAESGPALLLGARGRRLDVRQARTVVHQTVS 233

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            +        H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V        +  
Sbjct: 234 AVDGAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHV----AVSRLRA 289

Query: 313 IYDQTHPSI 321
           +++Q HP  
Sbjct: 290 VHEQAHPRA 298


>gi|238650850|ref|YP_002916705.1| site-specific tyrosine recombinase XerC [Rickettsia peacockii str.
           Rustic]
 gi|259710438|sp|C4K256|XERC_RICPU RecName: Full=Tyrosine recombinase xerC
 gi|238624948|gb|ACR47654.1| site-specific tyrosine recombinase XerC [Rickettsia peacockii str.
           Rustic]
          Length = 305

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 115/311 (36%), Positives = 180/311 (57%), Gaps = 9/311 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++   +      W + L ++R  S  T+ SY  D + FL F+ +Y  E +TI  I+    
Sbjct: 1   MLDTSIQALINKWQKYLVLQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADI 60

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             IR++++KR        S+ R LS +K+F ++L+K        I ++++ KK+  LP+A
Sbjct: 61  RLIRSWLAKRNCDNFTASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKA 120

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+E   +  +++  +      KW++ RN A+L L+Y  GLRISEALS+T  + + +   +
Sbjct: 121 LSEDDVVISLEH--IEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLH-LQNLEFI 177

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKG K RI+P LP  +  I +Y ++ P+ L  N   P+FRG +GK L P VF R + 
Sbjct: 178 RIIGKGSKERIIPWLPIAKNLITQYLEILPYKLGDNE--PIFRGKQGKELQPSVFNRELI 235

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L+ + GLP   TAH+ RHSFA+HLL +G DLRS+Q +LGH  LSTTQ YT  + K+   
Sbjct: 236 KLKHFYGLPQHLTAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTKTSIKH--- 292

Query: 309 WMMEIYDQTHP 319
            +  +Y   +P
Sbjct: 293 -LEAVYTTAYP 302


>gi|284035039|ref|YP_003384969.1| integrase family protein [Spirosoma linguale DSM 74]
 gi|283814332|gb|ADB36170.1| integrase family protein [Spirosoma linguale DSM 74]
          Length = 298

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 88/306 (28%), Positives = 153/306 (50%), Gaps = 13/306 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q++L ++  E+ LS  TL +Y  D  QF  FL      +  I    +  +  +R++I   
Sbjct: 5   QDFLAHIRYEKRLSHHTLTAYANDLEQFCTFLLA----ECNIDQPERADFRHVRSWIVSL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +   S+ R ++ +++F  +L +RK+     +  ++ LK S  LP+ + EK    L+
Sbjct: 61  VESGMDKSSVNRKIATLRNFFGFLLRRKVIDFDPMSKIQALKASKRLPQYVEEKPMEMLL 120

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D++         +   R+  +L LLYG G+R+SE   L   ++   + T+ + GK +K R
Sbjct: 121 DDIEF----PDTFEGLRDKLVLELLYGTGIRLSELTGLKTTDVNLYEKTIVVLGKRNKHR 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           IVPL   + + I +Y  L   + +       L    +G    P + QR +++    +   
Sbjct: 177 IVPLNQPLFELIQQYNLLKEKEFSGQADTAHLIVSDKGVAAYPVLIQRIVKRHLTLVTTL 236

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + + H LRH+FATHLL+ G DL +I+ +LGH  L+ TQIYT+ +     D + + YDQ 
Sbjct: 237 GTKSPHVLRHTFATHLLNRGADLNAIKDLLGHSSLAATQIYTHTS----LDQLKKTYDQA 292

Query: 318 HPSITQ 323
           HP   +
Sbjct: 293 HPKAKK 298


>gi|238750683|ref|ZP_04612182.1| Tyrosine recombinase [Yersinia rohdei ATCC 43380]
 gi|238711073|gb|EEQ03292.1| Tyrosine recombinase [Yersinia rohdei ATCC 43380]
          Length = 263

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 70/268 (26%), Positives = 131/268 (48%), Gaps = 12/268 (4%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           E + +   + L   ++R+ +S+ +   +   SL   LS ++SFL +L  + +   +    
Sbjct: 5   EPMGLVHWQTLDAAQVRSLVSRSKRAGLHSSSLALRLSALRSFLDWLVSQGVLNANPAKG 64

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +   +    LP+ ++  +   L+D  L         +  R+ A+L ++YG GLR+SE + 
Sbjct: 65  VSTPRSGRHLPKNIDVDEVDKLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVG 118

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           +  +++      + + GKG K R VP+  +    +  +  L   +L       +F    G
Sbjct: 119 MNCKHVDLASGEVWVMGKGSKERKVPIGKTAVTWLEHWLALR--ELFEPQDDAIFLANTG 176

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           K ++    Q+   +     G+      H LRHSFATH+L + GDLR++Q +LGH  L+TT
Sbjct: 177 KRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTT 236

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
           QIYT+++ ++    +  +YD  HP   +
Sbjct: 237 QIYTHLDFQH----LATVYDAAHPRAKR 260


>gi|86747659|ref|YP_484155.1| tyrosine recombinase XerD [Rhodopseudomonas palustris HaA2]
 gi|86570687|gb|ABD05244.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris HaA2]
          Length = 347

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 85/318 (26%), Positives = 134/318 (42%), Gaps = 24/318 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  +  E+G S  TL +Y  D      +L          ++I       +R +++  
Sbjct: 39  ELFLDMIAAEQGASANTLDAYRRDLADLSHYLGRRR------KSIASADTEALRGYLADL 92

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            T+     S+ R LS ++   ++L   +I  +     +   K+   LP+ L+      L+
Sbjct: 93  DTRGFASTSVARRLSALRHLFRFLLSERIRVDDPAAILSGPKRGRGLPKVLSIADVDRLL 152

Query: 139 ---DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
                             AR   +L +LY  GLR+SE ++L       D   + ++GKGD
Sbjct: 153 GCARQEADAAEGAAGLRAARLYCLLEVLYATGLRVSELVALPRTAARGDARMIVVRGKGD 212

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLN---------IQLPLFRGIRGK-PLNPGVFQR 245
           K R+VPL  S + A+  Y                        LF        L    F R
Sbjct: 213 KERLVPLNGSSKAAMTRYLATAAAAEKAAAGGKKTAAPASKWLFPSFGESGHLTRQHFAR 272

Query: 246 YIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            +++L    GLP    + H LRH+FA+HLL NG DLR +Q++LGH  +STTQIYT+V   
Sbjct: 273 DLKELAARAGLPPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHV--- 329

Query: 305 NGGDWMMEIYDQTHPSIT 322
              D +  +    HP   
Sbjct: 330 -VEDRLKSLVRDLHPLAE 346


>gi|157804202|ref|YP_001492751.1| site-specific tyrosine recombinase XerC [Rickettsia canadensis str.
           McKiel]
 gi|166918899|sp|A8F033|XERC_RICCK RecName: Full=Tyrosine recombinase xerC
 gi|157785465|gb|ABV73966.1| tyrosine recombinase [Rickettsia canadensis str. McKiel]
          Length = 305

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 117/311 (37%), Positives = 183/311 (58%), Gaps = 9/311 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++   + +    W Q L +++  S  T+ SY  D + FL F+ +Y  + +TI  I+    
Sbjct: 1   MLDTSIQELINKWQQYLILQKNYSHHTVVSYNNDLKHFLEFMHYYNSDLVTINHIKTADI 60

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             IR++++KR        S+ R LS +K+F K+L+K        I ++++ KK+  LP++
Sbjct: 61  RLIRSWLAKRNCNNFTTSSISRGLSAVKNFYKFLEKTTQLNSHIIFSIKSPKKTKLLPKS 120

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+E   +  + +  +      KW++ RN A+L L+Y  GLRISEALS+T  + + +   +
Sbjct: 121 LSEDDVVISLKH--IEEYGNVKWVELRNKALLVLIYATGLRISEALSITKLH-LQNLEFI 177

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKG K RI+P LP V+  I +Y ++ P+ L  N   P+FRG +GK L P VF R + 
Sbjct: 178 RIIGKGSKERIIPWLPIVKNLITQYLEILPYKLGENE--PIFRGKQGKKLQPTVFNRELI 235

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L+R+ GLP   TAH+ RHSFA+HLL +G DLRSIQ +LGH  LSTTQ YT  + K+   
Sbjct: 236 KLKRFYGLPEHLTAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTSIKH--- 292

Query: 309 WMMEIYDQTHP 319
            ++ +Y   +P
Sbjct: 293 -LVSVYTSAYP 302


>gi|302525185|ref|ZP_07277527.1| tyrosine recombinase XerC [Streptomyces sp. AA4]
 gi|302434080|gb|EFL05896.1| tyrosine recombinase XerC [Streptomyces sp. AA4]
          Length = 307

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 90/302 (29%), Positives = 146/302 (48%), Gaps = 7/302 (2%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + ++L +ERGLS  T+++Y  D    L F      E    +    L  T++RA+++ +R+
Sbjct: 12  YERHLSLERGLSPHTVRAYVGDVVSLLAFQTV-GAEDRPARRFEDLDVTQLRAWLAGQRS 70

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
              G  +L R  +  ++F  +  +  +        +   +   +LP  L  +QA  L+D 
Sbjct: 71  DGAGRTTLARRAAAARTFTAWAHRTGLLKSDPGGRLAAPRTHRTLPGVLRAEQADALMDA 130

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                + E   +  R+ A++ LLY  G+R+SE   L   ++   +  L + GKGDK R V
Sbjct: 131 SAKGAA-ERDPVALRDRALVELLYATGIRVSELCGLDVASVDFSRRVLSVVGKGDKERTV 189

Query: 201 PLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P      +A+  + +     L        LF G+RGK L+P   +R + +    +     
Sbjct: 190 PFGVPAAEALTAWLEDGRPALAGETPPKALFLGVRGKRLDPRAARRVVHEAVAAVPGAAD 249

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRHS ATHLL  G DLRS+Q +LGH  L+TTQ+YT+V      D +  I+D+ HP
Sbjct: 250 MGPHGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTHVT----VDRLKAIHDRAHP 305

Query: 320 SI 321
             
Sbjct: 306 RA 307


>gi|158313011|ref|YP_001505519.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158108416|gb|ABW10613.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 344

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 77/308 (25%), Positives = 134/308 (43%), Gaps = 12/308 (3%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             + ++++L  ER  S  T+++Y  D     +              +  L    +R +++
Sbjct: 46  AVEAFVRHLVAERDRSPETVRAYRAD-----LAGLRAHAAAAGRTDLLDLDLAVLRGWLA 100

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             R+      ++ R  S  + F  +  +R    +     +   +    +P+ L   QA  
Sbjct: 101 GMRSAGAAPATIARRASLARVFSAFAARRGFLPDDVGARLATTRAPRRIPQVLTAAQADR 160

Query: 137 LVDNV---LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           L++               ++ R+  +L +LYG  +R+SE   L   ++  ++  LR+ GK
Sbjct: 161 LLETRPRGDRAQDPRDVALNLRDDLVLEILYGSAVRVSELCRLDIGDVDHERRLLRVHGK 220

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G + R VP       A+  +       L   ++  L  G RG  L+P   +R ++     
Sbjct: 221 GGRQRSVPFSVPAAGALDVWLTRGRPYLATRVEAALLLGARGGRLDPRSVRRLVQARGAA 280

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+P   T H LRH  ATH++  G DLRS+Q +LGH  LSTTQIYT+V  +     +   
Sbjct: 281 AGVPTGLTPHGLRHGAATHMVEGGADLRSVQELLGHASLSTTQIYTHVTPER----LRAA 336

Query: 314 YDQTHPSI 321
           +DQ HP  
Sbjct: 337 FDQAHPRA 344


>gi|297559947|ref|YP_003678921.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844395|gb|ADH66415.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 328

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 85/321 (26%), Positives = 144/321 (44%), Gaps = 27/321 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L +L  ER L+  TL +Y  D R++  +LA +      + +  ++   ++  F+   R
Sbjct: 18  AFLDHLSAERALADNTLAAYRRDLRRYRAYLAGH-----GVLSPERVGPAQVGDFLRALR 72

Query: 80  TQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
                   +G  S  R+L+ ++   ++  +   T       +        LP+A+     
Sbjct: 73  EGDADHPPLGAASAGRALAAVRGLHRFAAREGWTDADPAAEVSPPAPPMRLPKAVPLASV 132

Query: 135 LTLVDNV----LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI------MDD 184
             L+D         +      +  R+ A+L +LYG G R+SEA+ L   ++       D 
Sbjct: 133 ERLLDAAGPVGAPASGDRAGLLALRDRALLEVLYGTGARVSEAVGLDVDDVADAVEGDDA 192

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGV 242
              +R +GKG + R+VPL    R+A+  Y       L  + +    LF   RG  L    
Sbjct: 193 VGLVRFRGKGGRERVVPLGSHARRALSGYLVRARPGLAASGRGGPALFLNARGGRLTRQG 252

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               +  +    G+    + HTLRHSFATHLL  G D+R +Q +LGH  ++TTQIYT V 
Sbjct: 253 GWGILAAVAERAGVE-GVSPHTLRHSFATHLLDGGADIRVVQELLGHSSVTTTQIYTLVT 311

Query: 303 SKNGGDWMMEIYDQTHPSITQ 323
            ++    + E+Y  +HP   +
Sbjct: 312 VEH----LREVYASSHPRARR 328


>gi|225874533|ref|YP_002755992.1| putative tyrosine recombinase XerC [Acidobacterium capsulatum ATCC
           51196]
 gi|225793160|gb|ACO33250.1| putative tyrosine recombinase XerC [Acidobacterium capsulatum ATCC
           51196]
          Length = 310

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 95/310 (30%), Positives = 146/310 (47%), Gaps = 16/310 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L  ERG S  TL++Y  + R F  +      + + ++    + +T IRA++ +
Sbjct: 12  VEAYLAALRNERGSSPHTLRAYTRELRDFAAYAERLLGKDVGVKA---MEHTHIRAYLGE 68

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + +   S  R+L+ I+S+ K+L +     +S    +   K    LPR    +    L
Sbjct: 69  LYERGLSKASAARALAAIRSWCKWLARHGELEQSPAALVATPKLPKHLPRVPTIEDMNRL 128

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           VD     +S E     AR+  IL LLYGCG+R +E + +  ++I      + ++GKG K 
Sbjct: 129 VD----ASSEEVAAWPARDRLILELLYGCGIRNAELVGINLEDIQWTNEAILVRGKGRKE 184

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIR---GKPLNPGVFQRYIRQLRR 252
           R VP+  +  +A+  Y       L         L    R      L      R ++Q+  
Sbjct: 185 RYVPIGDAAAQALRAYLPERNQKLATAGKDSAALLLNARLRGQGRLTTRSVGRIVKQMAL 244

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GLP     HTLRH+F THLL  G DLR+IQ +LGH RLSTTQ YT +        +  
Sbjct: 245 AQGLPADVHPHTLRHAFGTHLLEEGADLRAIQELLGHERLSTTQRYTQLT----VGQVEA 300

Query: 313 IYDQTHPSIT 322
           +YD+THP   
Sbjct: 301 VYDRTHPRAK 310


>gi|57239387|ref|YP_180523.1| integrase/recombinase [Ehrlichia ruminantium str. Welgevonden]
 gi|57161466|emb|CAH58391.1| putative integrase/recombinase XerD or XerC [Ehrlichia ruminantium
           str. Welgevonden]
          Length = 312

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 108/318 (33%), Positives = 172/318 (54%), Gaps = 10/318 (3%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + + EL     +W   +E E+  S  T+ SY  D  + + FL   T   +T+  +  +  
Sbjct: 1   MSNKELYDIVNDWKIWMEQEKRYSLNTVVSYVRDLDKLIKFLHKSTGCSVTLNDLVHVKI 60

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++R + + R    +   +  RSLS +++F +YL +        +  +       +LP+ 
Sbjct: 61  GDLRKWFASRYQCGVEAVTNARSLSALRNFFRYLSRMYYIDSQAVFYLSRPHLKKTLPKV 120

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L       +++           W+D RN AI+ LLYG G RISE ++L  Q++ +D+  L
Sbjct: 121 LAGSHIEIILNYY---KQLPQNWVDMRNFAIMMLLYGSGFRISEVVNLKFQDVREDR--L 175

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYI 247
            I GKG+K R+VP+L  V K++ +Y + CP+ L        +F G+RGK L+   F   +
Sbjct: 176 FITGKGNKERVVPILSMVYKSLCQYIECCPYYLGARPSNQYIFVGVRGKKLSRTHFANIM 235

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++LR  +GLP  TTAHT RHSFATHL   G D+RS+Q +LGH  LSTTQIYT+++ K+  
Sbjct: 236 QKLRAEMGLPDITTAHTFRHSFATHLFIGGADIRSVQELLGHTSLSTTQIYTHLDHKS-- 293

Query: 308 DWMMEIYDQTHPSITQKD 325
             ++E Y   HP I +K+
Sbjct: 294 --IIEHYKAFHPQIVKKN 309


>gi|157829099|ref|YP_001495341.1| site-specific tyrosine recombinase XerC [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165933823|ref|YP_001650612.1| site-specific tyrosine recombinase XerC [Rickettsia rickettsii str.
           Iowa]
 gi|166918901|sp|A8GTV8|XERC_RICRS RecName: Full=Tyrosine recombinase xerC
 gi|189030082|sp|B0BVE6|XERC_RICRO RecName: Full=Tyrosine recombinase xerC
 gi|157801580|gb|ABV76833.1| site-specific tyrosine recombinase XerC [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165908910|gb|ABY73206.1| integrase/recombinase (XerC/CodV family) [Rickettsia rickettsii
           str. Iowa]
          Length = 305

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 115/311 (36%), Positives = 181/311 (58%), Gaps = 9/311 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++   +      W + L ++R  S  T+ SY  D + FL F+ +Y  E +TI  I+    
Sbjct: 1   MLDTSIQALINKWQKYLVLQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADI 60

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             IR++++KR        S+ R LS +K+F ++L+K        I ++++ KK+  LP+A
Sbjct: 61  RLIRSWLAKRNCDNFAASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKA 120

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+E   +  +++  +      KW++ RN A+L L+Y  GLRISEALS+T  + + +   +
Sbjct: 121 LSEDDVVISLEH--IEEYGNIKWVELRNKALLVLIYASGLRISEALSITKLH-LQNLEFI 177

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKG K RI+P LP  +  I +Y ++ P+ L  N   P+FRG +GK L P VF R + 
Sbjct: 178 RIIGKGSKERIIPWLPIAKNLITQYLEILPYKLGDNE--PIFRGKQGKKLQPPVFNRELI 235

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L+ + GLP   TAH+ RHSFA+HLL +G DLRS+Q++LGH  LSTTQ YT  + K+   
Sbjct: 236 KLKHFYGLPQHLTAHSFRHSFASHLLEHGADLRSLQALLGHKSLSTTQNYTKTSIKH--- 292

Query: 309 WMMEIYDQTHP 319
            +  +Y   +P
Sbjct: 293 -LEAVYTTAYP 302


>gi|304407019|ref|ZP_07388673.1| integrase family protein [Paenibacillus curdlanolyticus YK9]
 gi|304344006|gb|EFM09846.1| integrase family protein [Paenibacillus curdlanolyticus YK9]
          Length = 316

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 84/321 (26%), Positives = 151/321 (47%), Gaps = 17/321 (5%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           ++L E ++ ++  E Q++L++   +R LS+ TL SYE D R F+ F A        I   
Sbjct: 11  HSLSEGIAGQMETELQSFLRDWPADRSLSESTLMSYERDLRHFIRFAA-----DAGISAP 65

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
            Q+    +  +    R +   + SL R    +++F +YL  ++  T     +M   K  +
Sbjct: 66  EQVQKHHMARYWLTLRQEGRKNASLSRYRVSLRAFFRYLMDKQRVTADPTADMDAPKPDS 125

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
             PR L   Q   L+      +    +    R+SAIL  +Y  G+R+SE ++L  +++  
Sbjct: 126 PPPRILTAVQVELLL-----ASPDPAEPSGLRDSAILETMYATGIRVSELIALDLEHVHV 180

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPG 241
               +R      K RIVP+  +   ++  Y       L  + + +  +F   RG+ +   
Sbjct: 181 SLGFIRCSA-NAKERIVPIGRAASASLEAYLQSGRERLLRDNSEEQAVFINRRGERMTRQ 239

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              + +++      +    T H+LRHSFA HLL NG D+R++Q ++GH  L+ TQ Y ++
Sbjct: 240 GLWKIVKKHAALASIEGDLTPHSLRHSFAAHLLENGADVRAVQEMMGHAGLAATQKYVHL 299

Query: 302 NSKNGGDWMMEIYDQTHPSIT 322
                   M E+Y+++HP   
Sbjct: 300 TKSR----MKEVYERSHPRAR 316


>gi|296532542|ref|ZP_06895255.1| integrase/recombinase XerD [Roseomonas cervicalis ATCC 49957]
 gi|296267143|gb|EFH13055.1| integrase/recombinase XerD [Roseomonas cervicalis ATCC 49957]
          Length = 294

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 83/311 (26%), Positives = 138/311 (44%), Gaps = 22/311 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +  + +L+ L  ERG ++ TL +Y  D      F            T+       +R 
Sbjct: 1   MDRHSEAFLEMLAAERGAARNTLAAYRADLEDVAGFARRQGG------TLAGADTELLRR 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++      +  R+  R LS ++ F ++L    +  +     + + ++ + +P+AL  ++
Sbjct: 55  YLAGLTDAGLSPRTAARRLSALRQFYRFLAAEGVRADDPTEILDSPRQPSRVPKALRREE 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D      +          +A+L LLY  GLR SE +SL  + +  D   + ++GK
Sbjct: 115 VEALLD----AATRLPGKRGPLATALLELLYCSGLRASELVSLPARALAQDSPLVLVRGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRR 252
           G+K R+VP+    R A L   D             LF        L        ++Q   
Sbjct: 171 GNKERLVPISERARLAALSLQDP------KKPSKWLFPSRGAAGHLTRQSLLLLVKQAAL 224

Query: 253 YLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             GL P   + H LRHSFATHLL  G DLR++Q +LGH  ++TTQIYT V  +     + 
Sbjct: 225 AAGLDPAKLSPHVLRHSFATHLLEGGADLRALQMLLGHADIATTQIYTRVLEER----LR 280

Query: 312 EIYDQTHPSIT 322
           +I +  HP   
Sbjct: 281 QIVETHHPLAE 291


>gi|258511365|ref|YP_003184799.1| integrase family protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478091|gb|ACV58410.1| integrase family protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 307

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 84/303 (27%), Positives = 141/303 (46%), Gaps = 19/303 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +  +    S  T++SY  D   F  +L     +   +  +  LS  ++R   S    
Sbjct: 12  FLDDAAL--RFSPRTVRSYGQDLEAFRQWL-----DDRGVYDLDALSTRDVRMHASDLLA 64

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     S+ R LS +++FL++  +R    +    N+R  K+   LPR L+E++   L+D+
Sbjct: 65  KGAAKSSVARRLSCLRTFLRFCAERGWVRQVMAKNVRLPKRDRRLPRYLHEEEVAALIDH 124

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           V         ++  R+ A+L  LY  G+R+SE + L   ++       R+ GKG + R V
Sbjct: 125 V-----GGDDFVALRDRALLEFLYATGVRVSECVHLDIGDLDLSAGFARVLGKGGRERYV 179

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
            +      A+  Y  L      +     +F   RG  L     +R + +  + +    S 
Sbjct: 180 MVGRRAVDALRRYLPLRDR---MARCSAVFINRRGGRLTDRSVRRVLERRIQEVPGLRSI 236

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
             H LRHSFATH+L+ G DLRS+Q +LGH  LS+TQIYT+ + +     +   Y   HP 
Sbjct: 237 HVHGLRHSFATHMLNGGADLRSVQELLGHASLSSTQIYTHTSREQ----LARAYYAAHPR 292

Query: 321 ITQ 323
             +
Sbjct: 293 ARR 295


>gi|163748706|ref|ZP_02155959.1| integrase/recombinase XerC [Shewanella benthica KT99]
 gi|161331816|gb|EDQ02620.1| integrase/recombinase XerC [Shewanella benthica KT99]
          Length = 308

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 84/312 (26%), Positives = 150/312 (48%), Gaps = 17/312 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRAFIS 76
            + +      ER LS  T+++Y  +  +    ++   EE   +     ++S+ +I+  + 
Sbjct: 6   FKRFESYCRSERQLSAHTVRNYLYELHR----VSAKLEENACLSFLWSEVSHEQIQHVLG 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           +   Q +  RSL  +LS +K F  +L    +   +   ++   K++  LP+ ++      
Sbjct: 62  QLHRQGLSPRSLSLTLSAVKQFCDFLLGEGVINANPAKSLSAPKQNKPLPKNMDLDSVTH 121

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L++            +  R+ AI+ L Y  GLR++E  +L    I   +  +++ GKG K
Sbjct: 122 LLEI------DADDLLSVRDKAIMELFYSSGLRLAELAALDVLAIRFAERQVKVLGKGSK 175

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            RIVP+     +AI  +  L    L  +    LF   +GK L     Q  + +  +   L
Sbjct: 176 ERIVPVGRCAIQAIQAWLALRESILCQDE--ALFVTAKGKRLAHRSIQARLAKWGQEQAL 233

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            +    H LRHSFATH+L +  DLR++Q +LGH  LSTTQIYT+++ ++    + ++YD 
Sbjct: 234 NMRVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQIYTSLDFQH----LAKVYDG 289

Query: 317 THPSITQKDKKN 328
            HP  ++  K N
Sbjct: 290 AHPRASRAKKLN 301


>gi|58579355|ref|YP_197567.1| integrase/recombinase [Ehrlichia ruminantium str. Welgevonden]
 gi|58417981|emb|CAI27185.1| Integrase/recombinase [Ehrlichia ruminantium str. Welgevonden]
          Length = 318

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 108/318 (33%), Positives = 172/318 (54%), Gaps = 10/318 (3%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + + EL     +W   +E E+  S  T+ SY  D  + + FL   T   +T+  +  +  
Sbjct: 7   MSNKELYDIVNDWKIWMEQEKRYSLNTVVSYVRDLDKLIKFLHKSTGCSVTLNDLVHVKI 66

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++R + + R    +   +  RSLS +++F +YL +        +  +       +LP+ 
Sbjct: 67  GDLRKWFASRYQCGVEAVTNARSLSALRNFFRYLSRMYYIDSQAVFYLSRPHLKKTLPKV 126

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L       +++           W+D RN AI+ LLYG G RISE ++L  Q++ +D+  L
Sbjct: 127 LAGSHIEIILNYY---KQLPQNWVDMRNFAIMMLLYGSGFRISEVVNLKFQDVREDR--L 181

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYI 247
            I GKG+K R+VP+L  V K++ +Y + CP+ L        +F G+RGK L+   F   +
Sbjct: 182 FITGKGNKERVVPILSMVYKSLCQYIECCPYYLGARPSNQYIFVGVRGKKLSRTHFANIM 241

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++LR  +GLP  TTAHT RHSFATHL   G D+RS+Q +LGH  LSTTQIYT+++ K+  
Sbjct: 242 QKLRAEMGLPDITTAHTFRHSFATHLFIGGADIRSVQELLGHTSLSTTQIYTHLDHKS-- 299

Query: 308 DWMMEIYDQTHPSITQKD 325
             ++E Y   HP I +K+
Sbjct: 300 --IIEHYKAFHPQIVKKN 315


>gi|332666489|ref|YP_004449277.1| Tyrosine recombinase xerC [Haliscomenobacter hydrossis DSM 1100]
 gi|332335303|gb|AEE52404.1| Tyrosine recombinase xerC [Haliscomenobacter hydrossis DSM 1100]
          Length = 297

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 89/303 (29%), Positives = 152/303 (50%), Gaps = 12/303 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+ L+ E+  S  T+++Y+ D  QF  +L    E    I     + +  IR++   
Sbjct: 3   IEKFLRYLQYEKRFSVHTIEAYQSDLVQFSTYLQSQYE----IAEPTTIQHIHIRSWAVS 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              QK    +++R LS +KS+ +YL++ KI + S +L +   K    LP  + EK    L
Sbjct: 59  LMEQKNAATTIRRKLSTLKSYFRYLQREKIISRSPMLQVSLPKLGKRLPVVVPEKSLDKL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D V       T +   R+  ++ LLY  G+R +E LSL   ++     T+++ GKG+K 
Sbjct: 119 LDPVET----PTDYTGLRDQVVIELLYLTGMRRAELLSLKVSDLNLHTHTIKVLGKGNKE 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R++P+  +    +  Y +        ++Q  LF   RG+P  P +  R +      +   
Sbjct: 175 RLIPMGHATVGLLKLYLETRRETFPDSMQTALFLTDRGEPAYPKLIYRIVNGYLSTVTTQ 234

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRHSFATHL  +G +L +I+ +LGH  L+ TQIYT+    +  + + +IY Q 
Sbjct: 235 EKRSPHVLRHSFATHLSDHGANLNAIKELLGHSSLAATQIYTH----HSIERLKKIYQQA 290

Query: 318 HPS 320
           HP 
Sbjct: 291 HPK 293


>gi|304315042|ref|YP_003850189.1| site-specific recombinase/integrase [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588501|gb|ADL58876.1| predicted site-specific recombinase/integrase [Methanothermobacter
           marburgensis str. Marburg]
          Length = 311

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 105/319 (32%), Positives = 158/319 (49%), Gaps = 26/319 (8%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           E   L E  +F  L   +++L  LEI R  S  T+++Y    + F  FL     E+  + 
Sbjct: 13  EKQGLLERYNFPEL--IEDYLVELEI-RNYSPNTIKTYRSIVKNFYEFL----MEEDDLY 65

Query: 62  TIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             R++     + +I    R + +    +      IK F ++ +         +  ++  K
Sbjct: 66  DDRRV-LRSFKRYIQYLKRDKNVTQNYIYLVTVVIKKFFEFSEI------DCLQEVKAPK 118

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHE--TKWIDARNSAILYLLYGCGLRISEALSLTP 178
           ++ SLP++LNE + + L++ V L        ++I  R+  IL LLY  GLR+SE +SL  
Sbjct: 119 RTKSLPKSLNEDEVMRLINAVELSDDGSPIKRFIKTRDRLILSLLYSSGLRVSELVSLKV 178

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
            +I     T+RI+GKGDK RIV    S R  ++EY      +        LF    G PL
Sbjct: 179 NDIDMGDRTIRIRGKGDKDRIVLFDESTRDLLVEYLSRRIHE-----SEYLFLNRFGDPL 233

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            P   Q  I+   R  G+    T H LRHSFATHLL NG D+R+IQ +LGH  LSTTQIY
Sbjct: 234 TPRYVQMMIKNYARKAGINKKVTPHILRHSFATHLLKNGVDIRAIQQLLGHSNLSTTQIY 293

Query: 299 TNVNSKNGGDWMMEIYDQT 317
           T+V+ +     +  +YD+ 
Sbjct: 294 TSVDMQT----LKNVYDRA 308


>gi|320107746|ref|YP_004183336.1| integrase family protein [Terriglobus saanensis SP1PR4]
 gi|319926267|gb|ADV83342.1| integrase family protein [Terriglobus saanensis SP1PR4]
          Length = 319

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 92/314 (29%), Positives = 145/314 (46%), Gaps = 17/314 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L  L  ERG+S  TL++Y  +   F  FLA     +     ++Q+ +  IR++++  
Sbjct: 9   DSFLAMLRDERGVSAHTLRAYTRELNDFTAFLADLLGNEA---EVKQVEHLHIRSYLAVL 65

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   S  R+L+ ++S+ K+L K     ++  L +   K    LPR  + ++   ++
Sbjct: 66  YDRGLSRASAARALAAVRSWFKWLAKEGKVQQNPALLVSTPKLPKHLPRVPSAEEVNRVL 125

Query: 139 DNVL-LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           D++       E+     R+  I  LLYGCG+R SE + +    I      + + GKG K 
Sbjct: 126 DSIEQTGKKDESASWPERDRVIWELLYGCGIRNSELVGIDLSAIDWKNDAILVLGKGRKE 185

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL------NLNIQLPLFRG---IRGKPLNPGVFQRYIR 248
           R VPL  +   A+  Y       L            PL           L      R ++
Sbjct: 186 RYVPLGDAANSAMRAYMPQREAKLQAAGKGKWMHSGPLLINLVARGDCRLTTRSVGRIVK 245

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            +    GLP     HTLRH+F THLL  G DLR+IQ +LGH RLSTTQ YT +       
Sbjct: 246 AIAVNRGLPADVHPHTLRHAFGTHLLEEGADLRAIQEMLGHERLSTTQRYTQLT----VT 301

Query: 309 WMMEIYDQTHPSIT 322
            +  +Y+QTHP  +
Sbjct: 302 QVQTVYEQTHPLAS 315


>gi|262198804|ref|YP_003270013.1| tyrosine recombinase XerD [Haliangium ochraceum DSM 14365]
 gi|262082151|gb|ACY18120.1| tyrosine recombinase XerD [Haliangium ochraceum DSM 14365]
          Length = 299

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 87/314 (27%), Positives = 149/314 (47%), Gaps = 17/314 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
               ++ +    + Q+L++ER LS  T++ Y  D  +   FLA     +     +  +  
Sbjct: 2   AAELDIDRACDLYFQHLKVERNLSVHTIEGYSRDLARLRRFLA-----ERACIAVASVRP 56

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++  ++     + +G RS  R+ + I+ + ++L   +        ++   +    LP  
Sbjct: 57  ADLADYLLALADE-LGARSRARASAAIRGWFRFLVSERYLERDPAEHLATPRALRPLPVV 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           + E+    L     L     T     R+ A++  LY  GLR+SE + L   ++  D   L
Sbjct: 116 IGEQAVTEL-----LAAPPTTTPRGLRDGAMIETLYATGLRVSELVGLLMADVHLDPGYL 170

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYI 247
           R+ GKG K R+VPL       I  Y          N + P LF    GKP+    F + +
Sbjct: 171 RVLGKGRKQRLVPLGEMACARIEAYVSGARGSFLKNPKQPALFLTGHGKPMTRQGFWKLL 230

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++  R +G+    + H LRHSFATHLL +G DLR++Q++LGH  +STTQIYT+V+     
Sbjct: 231 KRYARGVGIA-EISPHKLRHSFATHLLEHGADLRAVQAMLGHADISTTQIYTHVSRAR-- 287

Query: 308 DWMMEIYDQTHPSI 321
             ++ +Y++ HP  
Sbjct: 288 --LVALYEKHHPRA 299


>gi|326403661|ref|YP_004283743.1| tyrosine recombinase XerD [Acidiphilium multivorum AIU301]
 gi|325050523|dbj|BAJ80861.1| tyrosine recombinase XerD [Acidiphilium multivorum AIU301]
          Length = 320

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 88/317 (27%), Positives = 151/317 (47%), Gaps = 20/317 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
            L +  + +L+++  ERG ++ T+ +Y+ D   F  F A             +     + 
Sbjct: 18  ALERHIEAFLESMVAERGAARNTILAYQADLADFAAFCASRGHGP------AEADAASVA 71

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            ++    T  +  R+  R LS ++ F ++L +     +       + K + +LP+ ++E 
Sbjct: 72  DYLGGLATAGLSARTQARRLSSLRQFQRFLLRDGQRADDPTALTSSPKLARTLPKTISEA 131

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L    L   +           A L +LY  G+RISE L L    +  D S L I+G
Sbjct: 132 EVDAL----LTAAAAMPGQAGRVAEAGLEILYATGMRISELLVLPANALSTDASALLIKG 187

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLR 251
           KG + RIVPL  + R A     ++            LF G R   P+    F R ++++ 
Sbjct: 188 KGGRERIVPLSAAARDAAARLREMN----RKRPSRHLFPGRRMGFPMTRQAFARQLKRVA 243

Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              G+ P   + H+LRH+FATHLL+ G DLRS+Q++LGH  +STTQIYT+V ++     +
Sbjct: 244 VMAGIHPARVSPHSLRHAFATHLLARGADLRSLQTLLGHADISTTQIYTHVLAER----L 299

Query: 311 MEIYDQTHPSITQKDKK 327
            ++ ++ HP  T   ++
Sbjct: 300 QKLVEEHHPLATPPGRR 316


>gi|117625125|ref|YP_854113.1| site-specific tyrosine recombinase XerD [Escherichia coli APEC O1]
 gi|115514249|gb|ABJ02324.1| site-specific tyrosine recombinase XerD [Escherichia coli APEC O1]
          Length = 264

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 81/262 (30%), Positives = 131/262 (50%), Gaps = 11/262 (4%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           T+      +++A +++R        S  R LS ++   +YL + K   +    ++ + K 
Sbjct: 12  TLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKL 71

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              LP+ L+E Q   L+   L+        ++ R+ A+L +LY  GLR+SE + LT  +I
Sbjct: 72  PQRLPKDLSEAQVERLLQAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDI 126

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNP 240
              Q  +R+ GKG+K R+VPL       +  Y     P+ LN      LF   R + +  
Sbjct: 127 SLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTR 186

Query: 241 GVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
             F   I+      G+     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT
Sbjct: 187 QTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYT 246

Query: 300 NVNSKNGGDWMMEIYDQTHPSI 321
           +V ++     + +++ Q HP  
Sbjct: 247 HVATER----LRQLHQQHHPRA 264


>gi|260907246|ref|ZP_05915568.1| phage integrase family protein [Brevibacterium linens BL2]
          Length = 319

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 81/311 (26%), Positives = 140/311 (45%), Gaps = 15/311 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY----TEEKITIQTIRQLSYTEIRAFIS 76
           +  +L   R +S  T ++Y  D   F    A       + +     +  +   ++R+++ 
Sbjct: 14  YADHLRS-RDVSAHTSRAYVADVSDFFDHTAHAPGAGDKSRAAELQVSDIDLNDLRSWLI 72

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                     ++ R ++ +KSF  Y   +   + +    +R  KK + LP  L  +QA  
Sbjct: 73  TLDDAGAAKSTVARKIAAVKSFFAYCVNQHGLSNNPAARLRTPKKDSRLPTVLKPQQAAD 132

Query: 137 LV--DNVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           LV     +   +  +  I+A    R++AIL +LY   +R+SE   L   ++   +S + +
Sbjct: 133 LVSRQRTVHTEADNSDPIEATKWVRDAAILEMLYATAVRVSELTGLNRGDVDHQRSMITV 192

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG+K R VP     + A+ ++  L     + +    LF G+RG  +     +  + + 
Sbjct: 193 LGKGNKERRVPYGKPAQTALQKWLSLRDTFASESSGDALFLGVRGGRIGARQVRELVHRY 252

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                       H LRHS ATH+L  G DLR IQ +LGH  +S+TQIYT+V+ +     +
Sbjct: 253 GAADPSAPDIGPHGLRHSAATHMLDGGADLRQIQELLGHSTMSSTQIYTHVSMQR----L 308

Query: 311 MEIYDQTHPSI 321
            E Y Q HP  
Sbjct: 309 QETYRQAHPRA 319


>gi|306819226|ref|ZP_07452937.1| possible integrase/recombinase XerD [Mobiluncus mulieris ATCC
           35239]
 gi|307700216|ref|ZP_07637257.1| site-specific tyrosine recombinase XerC [Mobiluncus mulieris
           FB024-16]
 gi|304648008|gb|EFM45322.1| possible integrase/recombinase XerD [Mobiluncus mulieris ATCC
           35239]
 gi|307614598|gb|EFN93826.1| site-specific tyrosine recombinase XerC [Mobiluncus mulieris
           FB024-16]
          Length = 361

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 87/351 (24%), Positives = 150/351 (42%), Gaps = 54/351 (15%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFL------------------AFYTEEKITIQ 61
            + + L   RG S  +L++Y  D R+ L FL                     +       
Sbjct: 16  EFAEYLRANRGFSPHSLRAYLGDLRELLEFLCPPVALVPAAGLAAPPRSGESSGRGFAAP 75

Query: 62  TIRQL--SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
            + +       IRA++     +     +L R ++  ++F  +  K    +  + L + + 
Sbjct: 76  ELSRALSDPARIRAWLGDMSRRGASRATLARRVASFRTFSAWALKHGFMSCDSGLRLHSP 135

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHT--------------------------SHETKWID 153
           K  NSLP  L+E Q   L++   L                             +    + 
Sbjct: 136 KPDNSLPTVLSEAQVARLLNTARLQAYSLGVHQKASKSQAEIPDSIPGDSAVPNRVNPVG 195

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            R+ A+L LLY  G+R+SE   L  ++I   ++T+R+ GKG K R+ P       A+ EY
Sbjct: 196 LRDWALLELLYATGVRVSELTGLRLRDISRSEATIRVCGKGGKERVAPYGIPAGIALDEY 255

Query: 214 YDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            +     L   + +    +F G++G  L+  + +  + ++    G+P     H LRH+ A
Sbjct: 256 LEQGRPVLVSPDRDAGEWVFLGVKGGRLDTRLVRGMLHRMTAVAGVP-DLGPHGLRHTAA 314

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           THLL+ G DLR +Q ILGH  L TTQ YT++++ +    + ++Y Q HP  
Sbjct: 315 THLLNGGADLRCVQEILGHASLGTTQRYTHLSTAH----LRQVYLQAHPHA 361


>gi|307565729|ref|ZP_07628198.1| phage integrase, N-terminal SAM domain protein [Prevotella amnii
           CRIS 21A-A]
 gi|307345555|gb|EFN90923.1| phage integrase, N-terminal SAM domain protein [Prevotella amnii
           CRIS 21A-A]
          Length = 292

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 77/306 (25%), Positives = 143/306 (46%), Gaps = 15/306 (4%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ++  + +L  L +E+G S  T++SY  D   F +F     E+     T++ +    IR +
Sbjct: 1   MRMVEQFLSYLSLEKGYSLKTIESYREDLNGFELFYKSCDEQ----LTLKSIDSDVIRNW 56

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +      K    S+ R LS ++S  +YL K +   +  +  +R  KK   LP  + E + 
Sbjct: 57  VEYMMDNKAAVSSVNRRLSALRSLYRYLLKHRFVEKDPVHGVRGPKKQKPLPVFVKESEM 116

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
               D +L        + D    AI+ +LY  G+R+SE   L   ++     T+++ GK 
Sbjct: 117 ----DCLLRKEMWGGVYNDVLARAIIMMLYETGMRLSEITGLDMSSVDFYTCTVKVTGKR 172

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +K RI+P+   + + +  Y       +++  +   F   +G  +N    +  +++    +
Sbjct: 173 NKQRIIPIGQELEEELKSYLKKR---VSVEGEKAFFVTEKGIRVNANQVRYLVKKNLSKV 229

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
                 T H LRHSFAT +L++   L S++ +LGH  L+TT++YT+   +     + +IY
Sbjct: 230 STLKKRTPHVLRHSFATAMLNHKAGLESVRKLLGHESLATTEVYTHTTFEQ----LKQIY 285

Query: 315 DQTHPS 320
              HP 
Sbjct: 286 KSAHPR 291


>gi|58617409|ref|YP_196608.1| integrase/recombinase [Ehrlichia ruminantium str. Gardel]
 gi|58417021|emb|CAI28134.1| Integrase/recombinase [Ehrlichia ruminantium str. Gardel]
          Length = 318

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 108/318 (33%), Positives = 172/318 (54%), Gaps = 10/318 (3%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + + EL     +W   +E E+  S  T+ SY  D  + + FL   T   +T+  +  +  
Sbjct: 7   MSNKELYDIVNDWKIWMEQEKRYSLNTVVSYVRDLDKLIEFLHKSTGCSVTLNDLVHVKI 66

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++R + + R    +   +  RSLS +++F +YL +        +  +       +LP+ 
Sbjct: 67  GDLRKWFASRYQCGVEAVTNARSLSALRNFFRYLSRMYYIDSQAVFYLSRPHLKKTLPKV 126

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L       +++           W+D RN AI+ LLYG G RISE ++L  Q++ +D+  L
Sbjct: 127 LAGSHIEIILNYY---KQLPQNWVDMRNFAIMMLLYGSGFRISEVVNLKFQDVREDR--L 181

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYI 247
            I GKG+K R+VP+L  V K++ +Y + CP+ L        +F G+RGK L+   F   +
Sbjct: 182 FITGKGNKERVVPILSVVYKSLCQYIECCPYYLGARPNNQYIFVGVRGKKLSRTHFANIM 241

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++LR  +GLP  TTAHT RHSFATHL   G D+RS+Q +LGH  LSTTQIYT+++ K+  
Sbjct: 242 QKLRAEMGLPDITTAHTFRHSFATHLFIGGADIRSVQELLGHTSLSTTQIYTHLDHKS-- 299

Query: 308 DWMMEIYDQTHPSITQKD 325
             ++E Y   HP I +K+
Sbjct: 300 --IIEHYKAFHPQIVKKN 315


>gi|315121780|ref|YP_004062269.1| site-specific tyrosine recombinase XerD [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495182|gb|ADR51781.1| site-specific tyrosine recombinase XerD [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 318

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 82/310 (26%), Positives = 150/310 (48%), Gaps = 14/310 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ +  ER  S  TL SY+ D  +  +FL              + S   + A+++    
Sbjct: 18  FLEMMSSERAASVNTLTSYKSDLEEVQLFLDDDDLLL------SKASSDNLIAYLNHLSQ 71

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +K+   S +R +S I+ F  +L    +  ++    ++  KK+++LP+ L++     L+  
Sbjct: 72  RKLKASSQRRKISAIRQFYNFLCCEGLRKDNPSETLQFPKKNHTLPKTLHKNAIADLLKQ 131

Query: 141 VLLHTSHETK--WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             + +   +   W   R   ++ LLY  G+R+SE ++L+   +  ++  + I+GKG++ R
Sbjct: 132 AKIESEDPSPGQWKRIRMFLLIELLYSTGMRVSELVTLSSHTLNLEERIMIIKGKGNRER 191

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGL- 256
            V   PS   A+  Y  +C           LF    +   L+  VF R +++L     + 
Sbjct: 192 FVIFSPSSLCALQMYKKMCSTMEMTKNSPWLFPSSTKTGHLSRQVFARDLKELASRASIQ 251

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + + H +RH+FA+HLL  G DLR+IQ +LGH  +STTQIYT++      D + ++   
Sbjct: 252 TKNISPHIIRHAFASHLLEGGADLRTIQILLGHIDISTTQIYTHL----LPDKLQKLVQD 307

Query: 317 THPSITQKDK 326
            HP   +  K
Sbjct: 308 YHPLAKKLKK 317


>gi|160915107|ref|ZP_02077320.1| hypothetical protein EUBDOL_01115 [Eubacterium dolichum DSM 3991]
 gi|158432906|gb|EDP11195.1| hypothetical protein EUBDOL_01115 [Eubacterium dolichum DSM 3991]
          Length = 311

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 90/326 (27%), Positives = 151/326 (46%), Gaps = 27/326 (8%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L    Q++L  ++     ++ T+ SY  D RQ++ ++         I+ +  + Y+ ++
Sbjct: 2   KLTDVCQDYLHYIQAIDRKAEATIASYTNDLRQYVQYMQTCK-----IEEVENIDYSHVQ 56

Query: 73  AFISKRRT-----------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            F+   R            +K    S+   ++ +  F +YL        + + N+R  K 
Sbjct: 57  DFLEYLRQDHYDEKGQCIHKKKSSASINHMITSLHVFHRYLSMTYPKLLNPVQNIRTKKA 116

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              LP   N +    L+D+            +  + AI+ LLYGCGLR+SE  SL  Q +
Sbjct: 117 VQHLPVYFNMQDIERLLDSF------RDSDAEIMDKAIVELLYGCGLRVSECCSLMLQQV 170

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
             +Q  LR+ GKG+K R+VP+    +KA+  Y               +F   +G+ +   
Sbjct: 171 YLEQGFLRVIGKGNKERMVPMHARCKKALENYLTKVRKQRYARSNF-VFINAKGQEITRQ 229

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                I++    LGL    +AH+ RHSFA+HLL  G DLR +Q +LGH  +STTQIYT+V
Sbjct: 230 YIHVMIKKRLLALGLDERLSAHSFRHSFASHLLDGGADLRVVQELLGHSDISTTQIYTHV 289

Query: 302 NSKNGGDWMMEIYDQTHPSITQKDKK 327
            +K     +  +Y   HP   +  + 
Sbjct: 290 QNKR----LQSVYTSFHPRAKKHKED 311


>gi|330444332|ref|YP_004377318.1| site-specific recombinase, phage integrase family [Chlamydophila
           pecorum E58]
 gi|328807442|gb|AEB41615.1| site-specific recombinase, phage integrase family [Chlamydophila
           pecorum E58]
          Length = 312

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 88/319 (27%), Positives = 151/319 (47%), Gaps = 23/319 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-------------EKITI 60
           ++    ++L +L+  + +S  TL++Y  D  +F  F+  + +             ++ + 
Sbjct: 1   MISAFYSFLDSLKA-KSVSLHTLRNYSIDFSKFKEFIETHKQLPTTPKITLHMKFQETSD 59

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             +  L+   IR +IS    Q    R++KR LS +KSF +Y  K ++  E    N++  K
Sbjct: 60  LPLSLLTKDLIRLYISYLIEQGKSKRTIKRRLSTLKSFSRYCLKMQLLFEDPTENIQGPK 119

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LP  ++ +Q   L+          +K+   R+  +L L Y  GLR+SE  ++  Q+
Sbjct: 120 LPKELPSPISYEQVEILMTM-----PDVSKYTGLRDRCLLELFYSSGLRLSEITAINRQD 174

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I  + + +RI GKG K R++P+ P   + +  Y                F    G  ++P
Sbjct: 175 IDFEAALIRIFGKGKKERVLPVTPCAIRWLHHYLYHSERMSIQKDTQAFFLNRFGTRISP 234

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               R  +   +  GL  + T HT+RH+ ATH L NG DL++IQ++LGH  L TT IYT 
Sbjct: 235 RSIDRKFQHYLQLSGLTGNITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTQ 294

Query: 301 VNSKNGGDWMMEIYDQTHP 319
           V+ K         ++ +HP
Sbjct: 295 VSIKLK----KHTHETSHP 309


>gi|88607829|ref|YP_504822.1| tyrosine recombinase XerC [Anaplasma phagocytophilum HZ]
 gi|88598892|gb|ABD44362.1| tyrosine recombinase XerC [Anaplasma phagocytophilum HZ]
          Length = 319

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 118/316 (37%), Positives = 170/316 (53%), Gaps = 17/316 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK--ITIQTIRQLSYTEI 71
           L      W++ LE E+  SK T+ +Y  D R FL  +    +EK  + I  +  L  TE 
Sbjct: 14  LYDVVDAWVKCLEEEKRYSKHTVAAYLRDIRDFLQVVYGLRQEKSVVLITEMENLPMTEF 73

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           R +I+ R  Q     S  R++S I++F +YL++        + ++ N      LP+ L +
Sbjct: 74  RRWITIRCNQGKQSVSNLRAISAIRNFFRYLQRNHGIKNDVVFHIVNPIVRKGLPKVLEK 133

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
              L +V   +        W   R++AI+ LLYGCGLRISEA+ L   +   +   +R+ 
Sbjct: 134 SHVLKMVSENI-------HWTSRRDAAIVALLYGCGLRISEAVGLRFGD--LEADAVRVL 184

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           GKG K RI+P+LP V+K +  Y + CPF      N    +F G+RGK L+   F   ++ 
Sbjct: 185 GKGKKERIIPILPWVQKLLDGYVESCPFHGTGCGNKASYVFLGVRGKVLDRTYFAHRMQA 244

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           LRR +GLP STT H LRHSFATHL   G D+R IQ +LGH  LSTTQIYT+++ K+  D 
Sbjct: 245 LRRNMGLPESTTPHALRHSFATHLFLEGADIRVIQELLGHENLSTTQIYTHLDHKSIIDN 304

Query: 310 MMEIYDQTHPSITQKD 325
               Y   HP   +K+
Sbjct: 305 ----YMGFHPQTVKKN 316


>gi|113968738|ref|YP_732531.1| tyrosine recombinase XerC [Shewanella sp. MR-4]
 gi|117918850|ref|YP_868042.1| tyrosine recombinase XerC [Shewanella sp. ANA-3]
 gi|123130813|sp|Q0HN93|XERC_SHESM RecName: Full=Tyrosine recombinase xerC
 gi|171460757|sp|A0KS67|XERC_SHESA RecName: Full=Tyrosine recombinase xerC
 gi|113883422|gb|ABI37474.1| tyrosine recombinase XerC [Shewanella sp. MR-4]
 gi|117611182|gb|ABK46636.1| tyrosine recombinase XerC [Shewanella sp. ANA-3]
          Length = 299

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 81/310 (26%), Positives = 146/310 (47%), Gaps = 19/310 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q +   ++ ER LS  T+++Y  + ++    L            +  +     +  ++K
Sbjct: 9   LQQFETYMQSERQLSAHTVRNYMYELQRGSELLPEGV-------DLLNVGREHWQQVLAK 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + +  RSL   LS IK + ++L +  +   +    +   K++  LP+ ++      L
Sbjct: 62  LHRKGLSPRSLSLWLSAIKQWGEFLLRSGVIELNPAKGLSAPKQAKPLPKNIDVDSISHL 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +             +  R+ AI+ L Y  GLR++E  +L   ++  DQ  +R+ GKG+K 
Sbjct: 122 L------AIEGNDPLTLRDKAIMELFYSSGLRLAELAALDLSSVQYDQHEVRVLGKGNKE 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RIVP+     +AI  +          +    LF   +GK L+    Q  + +  +   L 
Sbjct: 176 RIVPVGRYAIEAISAWLKCRKQISCEDN--ALFVTEKGKRLSHRSIQARMSKWGQEQALS 233

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           +    H LRHSFATH+L +  DLR++Q +LGH  LSTTQIYT+++ ++    + ++YD  
Sbjct: 234 MRVHPHKLRHSFATHMLESSADLRAVQELLGHENLSTTQIYTSLDFQH----LAKVYDNA 289

Query: 318 HPSITQKDKK 327
           HP   ++  K
Sbjct: 290 HPRAKKQQDK 299


>gi|149372373|ref|ZP_01891561.1| integrase [unidentified eubacterium SCB49]
 gi|149354763|gb|EDM43326.1| integrase [unidentified eubacterium SCB49]
          Length = 295

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 93/304 (30%), Positives = 158/304 (51%), Gaps = 13/304 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +++  L +ER  SK T+ +YE D   F  FL     E    +    ++Y+ IR++I    
Sbjct: 5   SFIDYLLLERNYSKHTIVAYERDLETFFKFLKTTFSE----EDPVNVNYSMIRSWIVCLV 60

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q I +RS+ R +S +K++ K+L K K  T + +   ++LK S  +     E +    +D
Sbjct: 61  EQGISNRSINRKVSSLKTYYKFLLKTKQITATPLAKHKSLKVSKKIQVPFYETE----ID 116

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            V+    H T +  AR+  I+ L YG G+R +E +SL  +++   +  +++ GK +K R+
Sbjct: 117 EVITLLDHPTDFKTARDKLIVALFYGTGMRRAELISLKLKDVDLAEGVVKVLGKRNKERL 176

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +PLLPSV K++  Y       + ++    L    +G  +   +  R I          + 
Sbjct: 177 IPLLPSVLKSVDLYLKFRKEIVVVD-SDYLLLTNKGLKIYETLVYRLINGYFSTTSQKVK 235

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + H LRHSFATHLL+ G DL S++ +LGH  L++TQ+YT+    N    + E+Y +THP
Sbjct: 236 KSPHILRHSFATHLLNEGADLNSVKELLGHASLASTQVYTH----NSIATLKEVYRKTHP 291

Query: 320 SITQ 323
              +
Sbjct: 292 RSKK 295


>gi|239917444|ref|YP_002957002.1| tyrosine recombinase XerC subunit [Micrococcus luteus NCTC 2665]
 gi|281414065|ref|ZP_06245807.1| tyrosine recombinase XerC subunit [Micrococcus luteus NCTC 2665]
 gi|239838651|gb|ACS30448.1| tyrosine recombinase XerC subunit [Micrococcus luteus NCTC 2665]
          Length = 346

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 88/340 (25%), Positives = 152/340 (44%), Gaps = 27/340 (7%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL-------------- 50
           ++P   S       + + ++L  ER  S  T+++Y  D R  +  +              
Sbjct: 11  SVPRAPSPRDTAWLEAFEEHLRHERNRSPQTVRAYLADLRALIDHVVGTAGTSGTPAADD 70

Query: 51  -AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
            A           + +L   ++R +++      +   +L R ++ +++F  +L++  + +
Sbjct: 71  DAPVRHAPSAPDVLAELDIEDLRGWLAAMSGAGLARATLARRVAAVRTFTAWLRREGLRS 130

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLV-------DNVLLHTSHETKWIDARNSAILYL 162
           +   L +R+ +   +LP  L E+QA  L+       D            +  R++A+L L
Sbjct: 131 DDPALRLRSPRPEGTLPHVLQEQQARRLLAAAQELVDAAAAGDDPVAHALALRDAALLEL 190

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           LY  G R++E  +L   ++   +  +R+ GKGD+ R VP      +A+  +  L    L 
Sbjct: 191 LYATGARVAELSALDVDDLEAGRGVVRLTGKGDRQRTVPYGDPAGRALQAWQRLGRPRLA 250

Query: 223 LNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
                P LF G RG  L     +  + +    LG   +   H LRH+ ATHLL  G DLR
Sbjct: 251 RPDSGPALFLGARGGRLGVRQARTVVDRALEGLGDTAARGPHALRHTAATHLLDGGADLR 310

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           S+Q +LGH  L TTQ+YT+V+     D + E Y Q HP  
Sbjct: 311 SVQELLGHASLRTTQVYTHVS----IDRLREGYRQAHPRA 346


>gi|227875947|ref|ZP_03994070.1| possible integrase/recombinase XerD [Mobiluncus mulieris ATCC
           35243]
 gi|227843479|gb|EEJ53665.1| possible integrase/recombinase XerD [Mobiluncus mulieris ATCC
           35243]
          Length = 361

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 87/351 (24%), Positives = 150/351 (42%), Gaps = 54/351 (15%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFL------------------AFYTEEKITIQ 61
            + + L   RG S  +L++Y  D R+ L FL                     +       
Sbjct: 16  EFAEYLRANRGFSPHSLRAYLGDLRELLEFLCPPVALVPAAGLAAPPRSGESSGRGFAAP 75

Query: 62  TIRQL--SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
            + +       IRA++     +     +L R ++  ++F  +  K    +  + L + + 
Sbjct: 76  ELSRALSDPARIRAWLGDMSRRGASRATLARRVASFRTFSAWALKHGFMSCDSGLRLHSP 135

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHT--------------------------SHETKWID 153
           K  NSLP  L+E Q   L++   L                             +    + 
Sbjct: 136 KPDNSLPTVLSEAQVARLLNTARLQAYSLGVHQKASKSQAEIPDSIPGDSAVPNRVNPVG 195

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            R+ A+L LLY  G+R+SE   L  ++I   ++T+R+ GKG K R+ P       A+ EY
Sbjct: 196 LRDWALLELLYATGVRVSELTGLRLRDISRSEATIRVCGKGGKERVAPYGIPAGIALDEY 255

Query: 214 YDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            +     L   + +    +F G++G  L+  + +  + ++    G+P     H LRH+ A
Sbjct: 256 LEQGRPVLVSPDRDAGEWVFLGVKGGRLDTRLVRGMLHRMTAVAGVP-DLGPHGLRHTAA 314

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           THLL+ G DLR +Q ILGH  L TTQ YT++++ +    + ++Y Q HP  
Sbjct: 315 THLLNGGADLRCVQEILGHASLGTTQRYTHLSTTH----LRQVYLQAHPHA 361


>gi|296117640|ref|ZP_06836224.1| tyrosine recombinase XerC [Corynebacterium ammoniagenes DSM 20306]
 gi|295969371|gb|EFG82612.1| tyrosine recombinase XerC [Corynebacterium ammoniagenes DSM 20306]
          Length = 281

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 78/308 (25%), Positives = 138/308 (44%), Gaps = 27/308 (8%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +++   ++ ++     G S+ T++ Y  D                T +     +   +R+
Sbjct: 1   MVEAIYDFAEHQRYVLGRSEATIKGYTSDLLDLAQ----------TTEDFASFNLAHLRS 50

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++          +L R  +  K+F  +  K+          +   K    LP+ LNE++
Sbjct: 51  WLASAVAAGKARSTLARRTAAAKAFSTWAVKQGYLRTDEAAKLSTPKVPKQLPKVLNEQE 110

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           A T + N         +    R++A+L LLY  G+R+SE   +   +I   + T+R+ GK
Sbjct: 111 AATAMGN----AHSVDELHSLRDAAMLELLYATGMRVSELTGIDLSDIDSSRQTIRVLGK 166

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R+VP   + +KA+     L            LF G RG  ++    +R +    + 
Sbjct: 167 GNKQRVVPYGQAAQKALD--LWLARRAEMAKDPSALFVGTRGGRIDQRQVRRVVEAAGQ- 223

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                  + H LRHS ATH+L  G DLR +Q +LGH  L TTQ+YT+V S+     + ++
Sbjct: 224 ------VSPHALRHSAATHMLEGGADLRVVQELLGHSSLQTTQVYTHVTSER----LKKV 273

Query: 314 YDQTHPSI 321
           ++Q HP  
Sbjct: 274 FNQAHPRA 281


>gi|309781409|ref|ZP_07676145.1| tyrosine recombinase XerD [Ralstonia sp. 5_7_47FAA]
 gi|308919822|gb|EFP65483.1| tyrosine recombinase XerD [Ralstonia sp. 5_7_47FAA]
          Length = 311

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 83/321 (25%), Positives = 143/321 (44%), Gaps = 22/321 (6%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           E  +LP     +     Q +   L +E GL++ TL +Y  D   +  +LA         +
Sbjct: 10  EAPSLP----PQSADAIQRFCDALWLEDGLARNTLDAYRRDLTLYAHWLAERN------K 59

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           +I +    ++  + + R  +     S  R  +  K F ++  +  + +      +   K+
Sbjct: 60  SIAETEDDDLADYFAARHAESRA-SSANRRRTVFKRFFQWALREHVVSTDPSRLLPTAKQ 118

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL-TPQN 180
               P+ L+E Q   L+D            +  R+ A++ L+Y  GLR+SE ++L T + 
Sbjct: 119 PPRFPKTLSETQVEALID-----APDVDTPLGLRDRAMIELMYASGLRVSEIVALKTVEV 173

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLN 239
            +++     + GKG K R+VP        +  Y        L       LF   RG+ + 
Sbjct: 174 GLNEGVVRVVGGKGGKDRLVPFGAEAGDWLRRYLRDGRTALLGERTADALFVTARGEGMT 233

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
              F   I++      +    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT
Sbjct: 234 RQAFWYLIKRYALLADIHAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYT 293

Query: 300 NVNSKNGGDWMMEIYDQTHPS 320
           +V  +     +  ++ Q HP 
Sbjct: 294 HVARER----LRTLHAQHHPR 310


>gi|87200080|ref|YP_497337.1| phage integrase [Novosphingobium aromaticivorans DSM 12444]
 gi|87135761|gb|ABD26503.1| phage integrase [Novosphingobium aromaticivorans DSM 12444]
          Length = 297

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 108/304 (35%), Positives = 171/304 (56%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + W  +L + R  S  T+++Y     +FL  L      +    ++ ++    +RA ++ 
Sbjct: 7   LEAWNAHLALGRRRSPHTVRAYAATAARFLRGL----PGEQDWSSLARIDAATLRAHLAD 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           RR   +G+ S  R LS +K+F+ + +++    +++   +R  +    LPR +   +A+ L
Sbjct: 63  RRADGLGNVSAARELSALKTFIAFAREQAGHEDASRPRLRGPRVKRGLPRPITPDEAVNL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            + V    +    WI AR+ A+L LLYG G+RI+EAL+L    +   ++ + I GKG + 
Sbjct: 123 AETVADDAA--VPWIAARDRAVLLLLYGAGMRIAEALALPASALPLGEA-VTITGKGGRQ 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VPLLP VR  + +Y   CP+ L  +   PLFRG +G PL  G+ QR + + R  LGLP
Sbjct: 180 RVVPLLPIVRAGVDDYVRQCPWPLEKDK--PLFRGAKGGPLAQGMVQRAVARARIALGLP 237

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + T H LRHSFATHLL  G DLRS+Q +LGH  LS+TQIYT V++      ++++Y   
Sbjct: 238 ATATPHALRHSFATHLLGAGADLRSLQELLGHASLSSTQIYTRVDAAT----LLDVYRNA 293

Query: 318 HPSI 321
           HP  
Sbjct: 294 HPRA 297


>gi|288801073|ref|ZP_06406529.1| integrase/recombinase XerC [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332007|gb|EFC70489.1| integrase/recombinase XerC [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 297

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 75/308 (24%), Positives = 145/308 (47%), Gaps = 13/308 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L+ E+  S LT++SY  D + F  +         ++ +   ++  ++R++I  
Sbjct: 3   IDEFLNYLKYEKRRSLLTVESYSEDLKAFQSYFTNLD----SLLSWETITANDVRSWIES 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     ++ R LS ++SF ++ + R    +    N+   KK   LP+ L E +   L
Sbjct: 59  MMDKGNTATTINRRLSALRSFYRFARLRLAYEKDPAKNVIGPKKQKLLPQFLKEVEMERL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D+VL        +   R+  I+ L Y  G+R+SE  +L   +I   Q  +++ GK +K 
Sbjct: 119 LDDVL----QGDDFESVRDRIIILLFYETGVRLSELTALNCCDIDLMQRQIKVTGKRNKQ 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RIVP    +   +  Y  +     N+ +   LF   +G  +     +R +      +   
Sbjct: 175 RIVPFGEKLSLELRAYILIRGERENI-VDDALFVSNKGSRMPSTTIRRRVEHYLSQVSTL 233

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FAT +L+N  D+ S++ +LGH  L  T++YT+   ++    + ++Y + 
Sbjct: 234 KKRSPHVLRHTFATVMLNNDADIESVRHLLGHESLKATEVYTHTTFEH----LKKVYSKA 289

Query: 318 HPSITQKD 325
           HP  ++K 
Sbjct: 290 HPRSSRKK 297


>gi|283769465|ref|ZP_06342361.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa
           W1219]
 gi|283103733|gb|EFC05119.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa
           W1219]
          Length = 297

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 95/312 (30%), Positives = 154/312 (49%), Gaps = 16/312 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L +  Q +  +LEI +G S  T++SYE D +Q+L +L         I   ++++   ++
Sbjct: 2   KLDQAFQQFHLHLEINQGKSPRTVRSYENDLKQYLAYLKEKH-----ILDSQKVTLQVVQ 56

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F+S++ T K    S+    + I++F + ++      E+ +  ++  K    LP  L+ +
Sbjct: 57  DFLSQQSTIK-SSNSVVHMATSIRNFHEDIEFSTG-EENPVSLIQVRKNETYLPSFLSVE 114

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L+++       +       N  IL L+Y CGLRISE  SLT   +  +   LRI G
Sbjct: 115 EVKQLLNSFTRDDPKQE-----LNRTILELIYACGLRISELCSLTVAQVQLETGILRILG 169

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG+K RIVP+   V K +  Y +L     N +     F    G  +     Q  ++Q   
Sbjct: 170 KGNKERIVPIPNQVVKDLDYYLNLIRPIWNQHKTNTFFINHLGNRITARSIQLLLKQKAM 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G     T H+LRH++ATHLL  G DLR IQ +LGH  + TT+IYT+V ++     + E
Sbjct: 230 ECGFQKDITPHSLRHTYATHLLQAGADLRIIQELLGHSNIKTTEIYTHVQNRQ----LFE 285

Query: 313 IYDQTHPSITQK 324
            Y   HP   +K
Sbjct: 286 AYQNFHPLSKKK 297


>gi|239946786|ref|ZP_04698539.1| tyrosine recombinase XerC [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921062|gb|EER21086.1| tyrosine recombinase XerC [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 305

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 116/311 (37%), Positives = 181/311 (58%), Gaps = 9/311 (2%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++   + +    W + L ++R  S  T+ SY  D + FL F+ +Y  E +TI  I+    
Sbjct: 1   MLDISIQELINKWQKYLVLQRNCSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADI 60

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             IR++++KR        S+ R LS +K+F ++L+K        I ++++ KK+  LP+A
Sbjct: 61  RLIRSWLAKRNCNNFTTSSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKA 120

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+E   +  +++  +      KW++ RN A+L L+Y  GLRISEALS+T  + + +   +
Sbjct: 121 LSEDDVVISLEH--IEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLH-LQNLEFI 177

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKG K RI+P LP  +  I +Y ++ P+ L  N   P+FRG +GK L P VF R + 
Sbjct: 178 RIIGKGSKERIIPWLPITKNLITKYLEILPYKLGDNE--PIFRGKQGKKLQPPVFNRELI 235

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L+ + GLP   TAH+ RHSFA+HLL +G DLRSIQ +LGH  LSTTQ YT  + K+   
Sbjct: 236 KLKHFYGLPQHLTAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTSIKH--- 292

Query: 309 WMMEIYDQTHP 319
            +  +Y   +P
Sbjct: 293 -LEAVYTTAYP 302


>gi|163755827|ref|ZP_02162945.1| integrase, site-specific recombinase [Kordia algicida OT-1]
 gi|161324348|gb|EDP95679.1| integrase, site-specific recombinase [Kordia algicida OT-1]
          Length = 295

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 147/303 (48%), Gaps = 13/303 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + + L++E+  S+ T+ +YE D R F  F     E+     +I  + Y +IR +I     
Sbjct: 6   FTEYLKLEKNYSEHTVTAYEKDLRSFAEFCKKEYED----DSIINVHYVQIRNWIVSLVE 61

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + + + ++ R +S +K++ KYL K K    S +   + LK +  +    ++K+     D 
Sbjct: 62  KGLQNATINRKISSLKTYYKYLLKTKQIEASPLAKHKALKTAKKVQVPFSQKEM----DI 117

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           VL     +  +   RN  I+ + Y  G+R SE ++L   +I     T+RI GK +K RIV
Sbjct: 118 VLNAVEFKNDFEGVRNKTIIEMFYATGMRRSELINLKQSDIDYTAKTIRILGKRNKERIV 177

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           PLL  +   + EY        N   +  LF   +G  +   +  R I          +  
Sbjct: 178 PLLQKLEAQLKEYILHRKQIDNQKKEE-LFLTAKGNKIYSNLVYRLINDYFSIASTKVKK 236

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H LRH+FATHLL+ G DL +++ +LGH  L++TQ+YT+    N    +  +Y + HP 
Sbjct: 237 SPHMLRHTFATHLLNQGADLNAVKELLGHASLASTQVYTH----NSLAELKNVYAKAHPR 292

Query: 321 ITQ 323
             +
Sbjct: 293 NKK 295


>gi|229593315|ref|YP_002875434.1| site-specific tyrosine recombinase XerC [Pseudomonas fluorescens
           SBW25]
 gi|259710435|sp|C3K438|XERC_PSEFS RecName: Full=Tyrosine recombinase xerC
 gi|229365181|emb|CAY53449.1| tyrosine recombinase [Pseudomonas fluorescens SBW25]
          Length = 299

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 86/310 (27%), Positives = 146/310 (47%), Gaps = 17/310 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++   +  +L  ER +S  TL++Y  D  + L +      EK  I + + L    +R+
Sbjct: 1   MERQLDAYCAHLRNERQVSPHTLEAYRRDLNKVLAYC-----EKQQISSWKALDIQSLRS 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            I++        RSL R LS ++    YL +  +        +   K    LP+ L+  +
Sbjct: 56  LIARLHQAGQSSRSLSRLLSAVRGLYHYLNREGLCDHDPANGLSPPKGERRLPKTLDTDR 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           AL L+D      + E  ++  R+ AIL L Y  GLR+SE   L    +      +++ GK
Sbjct: 116 ALQLLDG-----AVEDDFLAHRDQAILELFYSSGLRLSELTGLNLDQLDLADGLVQVLGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R++P+    R+A+     L    L       +F   +G+ L P   Q  ++     
Sbjct: 171 GSKTRVLPVGRKAREALQL--WLPLRLLTNPADDAVFVSQQGRRLGPRAIQVRVKAAGER 228

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L  +   H LRHSFA+H+L +  DLR++Q +LGH  + TTQIYT+++ ++    +  +
Sbjct: 229 -ELGQNLHPHMLRHSFASHMLESSQDLRAVQELLGHSDIKTTQIYTHLDFQH----LATV 283

Query: 314 YDQTHPSITQ 323
           YD  HP   +
Sbjct: 284 YDSAHPRAKR 293


>gi|262195487|ref|YP_003266696.1| integrase family protein [Haliangium ochraceum DSM 14365]
 gi|262078834|gb|ACY14803.1| integrase family protein [Haliangium ochraceum DSM 14365]
          Length = 395

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 102/358 (28%), Positives = 151/358 (42%), Gaps = 61/358 (17%)

Query: 17  ERQNWL----QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           + Q WL      L  ERG S  T  +Y  D      F   Y E         Q++  +IR
Sbjct: 12  DWQRWLARFDDYLRTERGGSAHTRAAYGRDL---AEFGRVYEERSGAPPVPAQVAVLDIR 68

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           A ++    +     ++ R LS ++SF  +L +R     +    +R+ K+  +LPRAL+  
Sbjct: 69  AHLAGLYERNDAA-TMARKLSALRSFFAFLVQRGALDNNPARGVRSPKRRKALPRALDVD 127

Query: 133 QALTLVDNVLL----------------------------------------HTSHETKWI 152
            A  L++                                                  + +
Sbjct: 128 DAFRLIEAPTRAPASGADAAAASPARNVGRSGGRSANRAGATGTASAGKNKRAKTSREPL 187

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRIQ-GKGDKIRIVPLLPSVRK 208
             R+ AI  +LYG GLR+ E  +L   +I       + +R++ GKG K RIVPL      
Sbjct: 188 KLRDRAIAEVLYGSGLRVGECCALDLDDIDRARLSSALVRVRRGKGGKERIVPLGRQAVA 247

Query: 209 AILEYYDLCPFDLN----LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           A+  Y ++ P   +          LF   RG  L     QR I +  + +G     T H 
Sbjct: 248 ALDAYLNVRPLLRDPKTGARDPAALFLSYRGTRLTTRSVQRMIGRNAQEVG-AYEATPHA 306

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           LRHSFATHLL +G DLR+IQ +LGH  L++TQIYT V+     D +M +YD +HP   
Sbjct: 307 LRHSFATHLLDSGVDLRAIQELLGHASLASTQIYTKVS----LDHLMNVYDASHPRAR 360


>gi|320107747|ref|YP_004183337.1| integrase family protein [Terriglobus saanensis SP1PR4]
 gi|319926268|gb|ADV83343.1| integrase family protein [Terriglobus saanensis SP1PR4]
          Length = 311

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 93/321 (28%), Positives = 155/321 (48%), Gaps = 18/321 (5%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +P       L+  + ++  L +ERGL  LTL+SY+ D   F   L           ++ Q
Sbjct: 1   MPSPAPATNLQLVREYILYLRVERGLRPLTLESYQGDLYAFSEHLDSLH------TSLLQ 54

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
            +   I +F++  R      RS+ R LS ++ F ++L   K       LN+ +      L
Sbjct: 55  ATQENIASFMAHLREHDQESRSIARKLSCLRGFYRWLLLDKRIHHDPTLNIESPASWKVL 114

Query: 126 PRALNEKQALTLVDNVLLHT-SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           P++L E +   ++D   +   S +   +  R+ A++ LLY  GLR +E   L  +++  D
Sbjct: 115 PKSLAESEVREMLDRTGVAAHSQQAGALSLRDHALMNLLYAGGLRAAEICDLRVEDLHLD 174

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVF 243
           Q   +++GKGDK RIVPL  +  +A+  Y       L    +Q  LF  +RGKPL     
Sbjct: 175 QQRAQVRGKGDKERIVPLADTAVQALEVYLQRGRPQLVAKGLQRALFLSVRGKPLTNQTV 234

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              ++   +        + H LRHS ATH++ +G DLRS+Q++LGH  + TTQ+YT++  
Sbjct: 235 WSIVKSTNQLA------SPHKLRHSCATHMVEHGADLRSVQTLLGHADIVTTQVYTHL-- 286

Query: 304 KNGGDWMMEIYDQTHPSITQK 324
                 + E++   HP    +
Sbjct: 287 --ALGRLKEVHRLHHPRGRSR 305


>gi|302338068|ref|YP_003803274.1| tyrosine recombinase XerD [Spirochaeta smaragdinae DSM 11293]
 gi|301635253|gb|ADK80680.1| tyrosine recombinase XerD [Spirochaeta smaragdinae DSM 11293]
          Length = 311

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 143/305 (46%), Gaps = 19/305 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++  +L     L+ L+ +SY     + L +L    +   +          ++  +++ 
Sbjct: 7   LRDYDAHLGAVLSLAPLSRESYVSAISRLLGWLEEEGKNPFSASD------ADLVDYLTL 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  +     ++ + +S ++SF  +L   +   ++    +   K   SLP  L+ ++    
Sbjct: 61  RFEEGSDKHTIAKLVSIMRSFFDFLVSEEYRQDNPARMVDAPKLGRSLPSVLSIEEVEAF 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++ + L T         R+ A+  L+Y  GLR+SEA+ L+  ++      +R+ GKG K 
Sbjct: 121 LNAIPLETPE-----GLRDRALFELIYSAGLRVSEAVGLSAGSLYLRDGIIRVTGKGSKQ 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R++PL    RK I  Y       L    +    LF   RG PL+     +  +Q     G
Sbjct: 176 RVIPLGDEARKWIGRYLTDARPLLAKSFHPTDALFLSRRGTPLSRKNVWKRFKQFSLLAG 235

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +      HTLRHSFATHLL+ G DLRS+Q +LGH  +STTQIYT+++       +   ++
Sbjct: 236 VDGKV--HTLRHSFATHLLAGGADLRSVQELLGHSDISTTQIYTHIDD----PTLRNTHE 289

Query: 316 QTHPS 320
           Q HP 
Sbjct: 290 QFHPR 294


>gi|283458210|ref|YP_003362828.1| integrase [Rothia mucilaginosa DY-18]
 gi|283134243|dbj|BAI65008.1| integrase [Rothia mucilaginosa DY-18]
          Length = 422

 Score =  229 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 90/326 (27%), Positives = 153/326 (46%), Gaps = 17/326 (5%)

Query: 4   NNLPEI---VSFELLKE-RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
           + LPE    VS E+ +     + + L  E+  S+ T++SY  D   F  ++A        
Sbjct: 106 SALPESALGVSGEVFRPVLDRFERFLRYEKHRSEETIRSYISDLEGFFGYMARR-----G 160

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           ++ +  +  + IR ++     ++    ++ R  S +++F  + ++ ++   +    MR  
Sbjct: 161 VRHLDSIDASLIREWLGSLHLRQAARSTVVRRGSTLRTFFTWAQEEELVHANPTRGMRTP 220

Query: 120 KKSNSLPRALNEKQALTLVDN-VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           K+ + LP  L+ +Q   L+                 R  A++ +LY  G+RISE   L  
Sbjct: 221 KRESHLPPVLSREQMNQLLTTLQERRAQDPRDARLLRLEAVVEVLYASGMRISELTGLDL 280

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC---PFDLNLNIQLPLFRGIRG 235
           Q++     T+R+ GKG+K R+VPL     KA+  +                  LF G RG
Sbjct: 281 QSVDRANKTVRVLGKGNKERVVPLGTPALKALNRWVSYGRPQWIPEGSQGVTALFIGPRG 340

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
              N    +  + +L R +    ++ AH LRHS ATHL+  G D+RS+Q +LGH  L+TT
Sbjct: 341 GRANARQIREDLTRLLRTVENTQASGAHVLRHSAATHLVDGGADIRSVQELLGHSSLATT 400

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHPSI 321
           QIYT+V+ K     + E Y + HP  
Sbjct: 401 QIYTHVSMKR----LAETYARAHPRA 422


>gi|254488719|ref|ZP_05101924.1| tyrosine recombinase XerD [Roseobacter sp. GAI101]
 gi|214045588|gb|EEB86226.1| tyrosine recombinase XerD [Roseobacter sp. GAI101]
          Length = 324

 Score =  229 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 86/316 (27%), Positives = 140/316 (44%), Gaps = 20/316 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+    E G S  T  +Y  D + F  FLA             + +  ++  ++     
Sbjct: 12  FLEAQAAELGASTNTQLAYGRDLKDFDSFLAGRH------LDFARATRDDVERYLVWCDA 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q +   +  R LS IK   ++  +    +++  + +    +   LP+ L+E +   L++ 
Sbjct: 66  QGLAKSTRARRLSAIKQIYRFAFEESWRSDNPAIQISGPGQDKRLPKILSEHEVDRLLEA 125

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                S        RN+ ++ LLY  G+R+SE +SL       D   L I GKG+K R+V
Sbjct: 126 --ARGSGRNLHEKLRNTCLMELLYATGMRVSELVSLPVSATRGDPRLLLIMGKGNKERLV 183

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-------LNPGVFQRYIRQLRRY 253
           PL P  R A+ ++                       P       L    F   I++    
Sbjct: 184 PLSPPARVALTDWLIARDQIDAAAQAKKQPASRFLFPSRGVAGYLTRHRFYLMIKEFAVA 243

Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+ P   T HTLRH+FATHLL+NG DLR+IQ++LGH  ++TT+IYT+V        + E
Sbjct: 244 GGVDPSKVTPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEIYTHVLEAR----LSE 299

Query: 313 IYDQTHPSITQKDKKN 328
           +  + HP      +K+
Sbjct: 300 LVLENHPLAKAAARKS 315


>gi|148260468|ref|YP_001234595.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|146402149|gb|ABQ30676.1| phage integrase family protein [Acidiphilium cryptum JF-5]
          Length = 304

 Score =  229 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 88/317 (27%), Positives = 152/317 (47%), Gaps = 20/317 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
            L +  + +L+++  ERG ++ T+ +Y+ D   F  F A             +     + 
Sbjct: 2   ALERHIEAFLESMVAERGAARNTILAYQADLADFAAFCASRGHGP------AEADAASVA 55

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            ++    T  +  R+  R LS ++ F ++L +     +       + K + +LP+ ++E 
Sbjct: 56  DYLGGLATAGLSARTQARRLSSLRQFQRFLLRDGQRADDPTALTSSPKLARTLPKTISEA 115

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L    L   +           A L +LY  G+RISE L L    +  D S L I+G
Sbjct: 116 EVDAL----LTAAAAMPGQAGRVAEAGLEILYATGMRISELLVLPANALSTDASALLIKG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLR 251
           KG + RIVPL  + R A     ++            LF G R   P+    F R ++++ 
Sbjct: 172 KGGRERIVPLSAAARDAAARLREMN----RKRPSRHLFPGRRMGFPMTRQAFARQLKRVA 227

Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              G+ P   + H+LRH+FATHLL+ G DLRS+Q++LGH  +STTQIYT+V ++     +
Sbjct: 228 VMAGIHPARLSPHSLRHAFATHLLARGADLRSLQTLLGHADISTTQIYTHVLAER----L 283

Query: 311 MEIYDQTHPSITQKDKK 327
            ++ ++ HP  T+  ++
Sbjct: 284 QKLVEEHHPLATRPGRR 300


>gi|255262389|ref|ZP_05341731.1| tyrosine recombinase XerD [Thalassiobium sp. R2A62]
 gi|255104724|gb|EET47398.1| tyrosine recombinase XerD [Thalassiobium sp. R2A62]
          Length = 310

 Score =  229 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 82/321 (25%), Positives = 145/321 (45%), Gaps = 20/321 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S ++     ++L+    E   ++ T  +Y  D      +L                +  
Sbjct: 1   MSHDMALWISSFLEAQAAELDAARNTQLAYARDLTDVADWLKSKG------LHFSSATQG 54

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +I  ++     Q +   +  R LS +K   ++  +     ++  + ++   K   LP+ L
Sbjct: 55  DIENYLIFCDAQGLAKSTRARRLSAVKQLYRFAFEESWRADNPAIQIKGPGKDKRLPKTL 114

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           + ++   L++            +  RN+ ++ LLY  G+R++E +SL       D   L 
Sbjct: 115 SVEEVDRLLEASRTSAKSVDDRL--RNTCLMELLYATGMRVTELVSLPVSATRGDPRMLL 172

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL------PLFRGI-RGKPLNPGV 242
           I+GKGDK R+VPL P  R A+ ++        +  ++        LF    +   L    
Sbjct: 173 IRGKGDKERMVPLSPPARTALADWIKRWDALQDAAVKAGKPRARHLFPSRGKDGHLTRHR 232

Query: 243 FQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           F   I++     G+ P   T HTLRH+FATHLL+NG DLRSIQ++LGH  ++TT+IYT+V
Sbjct: 233 FYLMIKEFAVAGGVVPSKVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHV 292

Query: 302 NSKNGGDWMMEIYDQTHPSIT 322
             +     + E+  + HP   
Sbjct: 293 LDER----LRELVLEHHPLAK 309


>gi|255764498|ref|YP_003065000.2| site-specific tyrosine recombinase XerD [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254547849|gb|ACT57060.2| site-specific tyrosine recombinase XerD [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 300

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 85/307 (27%), Positives = 149/307 (48%), Gaps = 14/307 (4%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
            +  ER  S  TL +Y+ D ++   FL           ++   S   + ++++    +K+
Sbjct: 1   MMSSERASSINTLSAYKRDLKEMQNFLNNKEI------SLSAASTNHLISYLNHLSQRKL 54

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
              S +R +S I+ F  +L    +  ++    +   KK++ LP+ L++     L++   +
Sbjct: 55  VTSSQRRKISVIRQFYNFLCYEGLRKDNPSDTLELPKKNHILPKTLHKDTIANLLEQAKI 114

Query: 144 HT--SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
                   +W   R   ++ LLY  G+R+SE ++L+   +   + T+ IQGKG+K R+V 
Sbjct: 115 EAENPAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQGKGNKERLVI 174

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGL-PLS 259
           L PS   A+  Y   C         L LF    +   L+  VF R ++ L    G+   +
Sbjct: 175 LSPSALHALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKN 234

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + H +RH+FA+HLL  G DLR+IQ +LGH  +STTQIYT++      D + ++    HP
Sbjct: 235 ISPHIIRHAFASHLLEGGADLRTIQILLGHTDISTTQIYTHL----LPDKLQKLVQDYHP 290

Query: 320 SITQKDK 326
              ++ K
Sbjct: 291 LAKKEKK 297


>gi|225874532|ref|YP_002755991.1| putative tyrosine recombinase XerD [Acidobacterium capsulatum ATCC
           51196]
 gi|225794156|gb|ACO34246.1| putative tyrosine recombinase XerD [Acidobacterium capsulatum ATCC
           51196]
          Length = 302

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 94/310 (30%), Positives = 146/310 (47%), Gaps = 22/310 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++   L +E+GL  L+ Q+Y+ D   F  +L            +       +  F+  
Sbjct: 10  LRDYQSYLRVEKGLRPLSCQAYQSDLLLFAEYLESMN------TALLDARSEHVAGFLEH 63

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             T  +  RS+ R LS ++ F K+L   K       +NM +      LP++L ++    +
Sbjct: 64  LNTHGVVSRSVARKLSCLRGFYKWLILDKRIHRDPTINMDSPSAWKILPKSLAQEDMTAM 123

Query: 138 VDNVLLHTSH-ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           +D   L   H E   I  RN AIL LLY  GLR+SE   L   ++  D   + ++GKGDK
Sbjct: 124 LDRARLLAEHPEADGIALRNYAILELLYAGGLRVSELTGLRVADLSLDAGRVLVRGKGDK 183

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNI---QLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            R+VPL      A+ +Y D    +L       Q  LF   RGKPL      + +RQ    
Sbjct: 184 ERLVPLGQPAVAALRQYLDRGRAELARKARGAQGALFLSARGKPLTREYVWKLVRQY--- 240

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                  + H LRHS ATH++ +G DLR++Q+ LGH  ++TTQ+YT+V   +    +  +
Sbjct: 241 -----GASPHMLRHSAATHMVEHGADLRTVQTFLGHADIATTQVYTHVALGH----LKAV 291

Query: 314 YDQTHPSITQ 323
             Q HP   +
Sbjct: 292 VRQHHPRGKR 301


>gi|91205817|ref|YP_538172.1| site-specific tyrosine recombinase XerD [Rickettsia bellii
           RML369-C]
 gi|123084556|sp|Q1RHT1|XERD_RICBR RecName: Full=Tyrosine recombinase xerD
 gi|91069361|gb|ABE05083.1| Tyrosine recombinase XerD [Rickettsia bellii RML369-C]
          Length = 305

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 90/319 (28%), Positives = 151/319 (47%), Gaps = 26/319 (8%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ++    +L+ L  ER LSK ++ SY+ D   F  +LA     ++ I      +   IR +
Sbjct: 1   MEFISQFLEMLLAERALSKNSILSYKRDLLDFHNYLAKQKLSELNI------TTDNIRNW 54

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +       +  RS+ R +S IKS+ ++L     T  + +LN+   K  N LP  L+    
Sbjct: 55  VEYLAENSLQARSINRKISTIKSYYEFLISENHTNLNPLLNIDLPKYQNKLPEILSIDDI 114

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ------STL 188
            +L++      S E   ++    A+++LLY  GLR+SE +SL   +I+ ++         
Sbjct: 115 KSLLEYCSQDISPEGARLN----AMIHLLYASGLRVSELVSLKLSDILSNKVSREVKKIF 170

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIRG-KPLNPGVFQ 244
            + GKG+K RI+ +      ++++Y  +    +N       + LF        +    F 
Sbjct: 171 SVLGKGNKERIIVINEPAINSLVKYLVVRDNFVNKTKPKNLIYLFPSSAAAGYMTRQNFA 230

Query: 245 RYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             ++    Y GL P   + H LRHSFA+HLL  G DLR IQ +LGH  +STTQIYT++ +
Sbjct: 231 ILLKSAALYAGLNPEHISPHVLRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQT 290

Query: 304 KNGGDWMMEIYDQTHPSIT 322
            +    ++      HP   
Sbjct: 291 NHLKKALL-----HHPLSK 304


>gi|254494929|ref|ZP_01052592.2| phage integrase family protein [Polaribacter sp. MED152]
 gi|213690511|gb|EAQ42020.2| phage integrase family protein [Polaribacter sp. MED152]
          Length = 315

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 162/308 (52%), Gaps = 15/308 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L  E+  SK T+ +Y+ D   F  F+    ++    + + +++Y++IR++I  
Sbjct: 23  IKAFLDYLSHEKNYSKHTVIAYQKDLNSFKSFIRINFDQ----EDLLEVNYSQIRSWIVS 78

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              ++I +R++ R +S +KSF K+L+K +    + +   + LK +  +    ++K+  T+
Sbjct: 79  LVEEEISNRTINRKISSLKSFYKFLQKTEQIKSNPLQKHKALKVAKKVQVPFSQKEVATV 138

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +++       E  ++  RN  ++ + Y  G+R +E +++  ++I    + L++ GK +K 
Sbjct: 139 LESN-----TENSFVSIRNKLMVEIFYSTGIRRAELINIQLKDINSGSNVLKVLGKRNKE 193

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VP+L SV K +  Y          N    LF   +G  +   +  R I      +   
Sbjct: 194 RLVPILNSVLKTLNLYLGHRKNI--SNNSEYLFITEKGNKIYETLVYRVINSYFSKVSSK 251

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           +  + H LRHSFATHLL+ G DL S++ +LGH  L++TQ+YT+    N  D + ++Y+Q 
Sbjct: 252 VKKSPHMLRHSFATHLLNEGADLNSVKELLGHSSLASTQVYTH----NSLDAIKQVYNQA 307

Query: 318 HPSITQKD 325
           HP   + +
Sbjct: 308 HPKSKKNE 315


>gi|289207303|ref|YP_003459369.1| tyrosine recombinase XerC [Thioalkalivibrio sp. K90mix]
 gi|288942934|gb|ADC70633.1| tyrosine recombinase XerC [Thioalkalivibrio sp. K90mix]
          Length = 316

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 90/322 (27%), Positives = 146/322 (45%), Gaps = 20/322 (6%)

Query: 4   NNLPEIVS--FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           N  PE  +       +   +L +L   RG S  T+++Y+ D              ++   
Sbjct: 6   NPPPEAAAETTAHDADIAAFLAHLRDVRGHSPHTIKAYQRDLAHL---------RRLHSG 56

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
              QL   ++R    +   Q    RS++R LS  + F  +  + +    +    +R  + 
Sbjct: 57  PWDQLKAADMRRIAGQLARQGHHPRSIQRFLSAARGFFAHQVEHRRMPANPAAGLRGPRA 116

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
             +LPR L+  Q        L         + AR+ A+L LLY  GLR+SE   L   ++
Sbjct: 117 GRALPRDLDVDQT----QQALTPAEDLDPILAARDQAMLELLYSSGLRLSELTGLDLTDL 172

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
             D   +R+ GKG + R VP+    R A+  +   C  D        +F   RG+ +   
Sbjct: 173 DLDAGLVRVLGKGRRERSVPVGRMARDALRNWL-KCRGDWAAPDAHAVFVSRRGQRIGNR 231

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             QR + +  R  GL +    H LRH+FA+HLL + GDLR+IQ +LGH  L TTQIYT++
Sbjct: 232 AVQRRVAEAGRRAGLDVRLHPHRLRHAFASHLLESSGDLRAIQELLGHANLETTQIYTHL 291

Query: 302 NSKNGGDWMMEIYDQTHPSITQ 323
           + ++    + ++YD  HP   +
Sbjct: 292 DYQH----LAQVYDAAHPRARR 309


>gi|118617636|ref|YP_905968.1| site-specific tyrosine recombinase XerC [Mycobacterium ulcerans
           Agy99]
 gi|118569746|gb|ABL04497.1| integrase/recombinase XerC [Mycobacterium ulcerans Agy99]
          Length = 302

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 136/305 (44%), Gaps = 12/305 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + + L ++ G S  T ++Y  D R  L +LA           +R LS   +R++++ 
Sbjct: 9   LEEFDEYLALQCGRSAHTRRAYLGDLRSLLDYLAGRG------ADLRALSLPVLRSWLAT 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    +L R  S +K+F  +  +R +        ++  K   +LP  L + QAL  
Sbjct: 63  AAGAGAARTTLARRTSAVKAFTAWAVRRGLLATDPAARLQVPKAHRTLPAVLRQDQALAA 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +      ++ +   +  R+  I+ LLY  G+R+SE   L   ++      +R+ GKG+K 
Sbjct: 123 MTAAK-SSAQQGDPLALRDRLIVELLYATGIRVSELRGLDIDDVDTGHRLVRVLGKGNKQ 181

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R  P      +A+  +       L      P L  G RG+ L+    +  + Q    +  
Sbjct: 182 RTAPFGQPAAEALQAWLADGRPALATAESGPALLLGARGRRLDVRQARTVVHQTIAAVDG 241

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V        +  ++DQ
Sbjct: 242 APDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHV----AVSRLRAVHDQ 297

Query: 317 THPSI 321
            HP  
Sbjct: 298 AHPRA 302


>gi|92116109|ref|YP_575838.1| tyrosine recombinase XerD [Nitrobacter hamburgensis X14]
 gi|91799003|gb|ABE61378.1| tyrosine recombinase XerD subunit [Nitrobacter hamburgensis X14]
          Length = 319

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 87/314 (27%), Positives = 139/314 (44%), Gaps = 22/314 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L  E+G    TL +Y  D      FL    +  +T  T        +R ++     
Sbjct: 15  FLDMLAAEQGAGDNTLDAYRRDLEDLSAFLTRVGQTFVTAGT------QTLRDYLGDLDV 68

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     S+ R LS ++   ++L   +I ++     +   K+  SLP+ L+      L+  
Sbjct: 69  RGFKSSSVARRLSAMRHLFRFLLSERIRSDDPAAILSGPKRGRSLPKVLSIADVDRLLAC 128

Query: 141 VLLH-----TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
                     S   +   AR   +L +LY  GLR+SE +SL       D   + ++GKG+
Sbjct: 129 AKAAMETPDASPARRLRAARLYCLLEVLYATGLRVSELVSLPLSAARRDARMIVVRGKGN 188

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGK-PLNPGVFQRYIRQ 249
           K R+VPL  + R+A+ +Y          +  +      LF        L    F R +++
Sbjct: 189 KERLVPLNEASRQAMADYLAAMADRRGADKAVAVQPKWLFPSFGESGHLTRQHFARELKE 248

Query: 250 LRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           L    GL P   + H LRH+FA+HLL NG DLR +Q++LGH  +STTQIYT+V  +    
Sbjct: 249 LAAAAGLAPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER--- 305

Query: 309 WMMEIYDQTHPSIT 322
            +  +    HP   
Sbjct: 306 -LKSLVRDLHPLAE 318


>gi|90422054|ref|YP_530424.1| tyrosine recombinase XerD [Rhodopseudomonas palustris BisB18]
 gi|90104068|gb|ABD86105.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris
           BisB18]
          Length = 320

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 86/320 (26%), Positives = 141/320 (44%), Gaps = 22/320 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + +L  +  E+G  K TL +Y  D      FL           +        +R ++
Sbjct: 10  RLIELFLDMIAAEQGAGKNTLDAYRGDLTDLSDFLGHAR------SSFVAADTEVLRGYL 63

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++   +     S+ R LS  +   ++L   +I  +     +   K+   LP+ L+     
Sbjct: 64  AELDERGYKSTSVARKLSAFRHLFRFLLTERIRADDPAAILSGPKRGRGLPKVLSIADVD 123

Query: 136 TLVDN--VLLHTSH---ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            L+ +   L+   H   + +   AR   +L +LY  GLR+SE +SL       D   + +
Sbjct: 124 RLLQHAKDLIAAPHANTQQRLRAARLYCLLEVLYATGLRVSELVSLPLSAARRDARMIVV 183

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGK-PLNPGVFQ 244
           +GKG+K R+VPL  S ++A+  Y             N +    LF        L    F 
Sbjct: 184 RGKGNKERLVPLNESSKQAMAGYLAALDELRQEKAKNASASKWLFPSFGESGHLTRQHFA 243

Query: 245 RYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           R ++ L    GL P   + H LRH+FA+HLL NG DLR +Q++LGH  +STTQIYT+V  
Sbjct: 244 RELKDLAGAAGLSPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVE 303

Query: 304 KNGGDWMMEIYDQTHPSITQ 323
           +     +  +    HP   +
Sbjct: 304 ER----LKSLVRDLHPLADK 319


>gi|319953891|ref|YP_004165158.1| tyrosine recombinase xerc [Cellulophaga algicola DSM 14237]
 gi|319422551|gb|ADV49660.1| Tyrosine recombinase xerC [Cellulophaga algicola DSM 14237]
          Length = 308

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 81/303 (26%), Positives = 154/303 (50%), Gaps = 12/303 (3%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            ++  L +E+  S  T+++YE D  +F++F    +E    +  I ++SY  IR +I    
Sbjct: 17  AFIAYLSLEKKYSLNTIKAYENDLNEFILFCKDTSE----VVNIDEVSYVMIRNWIVALV 72

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
             KI +R++ R ++ +K++ K+L K +  + + +   + LK +  +    +E +   +  
Sbjct: 73  AAKIVNRTINRKIASLKAYYKFLLKTETISVTPLAKHKALKTAKKIEIPFSEAEMNEI-- 130

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             L+       +   R+  I+ LLY  G+R  E ++L   N+   Q T+++ GK +K RI
Sbjct: 131 --LVAIPFSEDFEGIRDKLIIELLYATGIRRIELVNLKVVNVDLRQKTIKVLGKRNKERI 188

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPL+ S+     EY D     +++  +  +F    G  +   +  R I      +   + 
Sbjct: 189 VPLVASLVLLFQEYLDARSSVVSVGAKEFVFLLKSGGKIYETLVYRVINHYFGLVSSKVK 248

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + H LRH+FATHLL+ G DL S++ +LGH  L++TQ+YT+    N    + +++ ++HP
Sbjct: 249 KSPHILRHTFATHLLNKGADLNSVKELLGHASLASTQVYTH----NSIAELKKVHLKSHP 304

Query: 320 SIT 322
              
Sbjct: 305 RNK 307


>gi|88802458|ref|ZP_01117985.1| putative site-specific recombinase [Polaribacter irgensii 23-P]
 gi|88781316|gb|EAR12494.1| putative site-specific recombinase [Polaribacter irgensii 23-P]
          Length = 301

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 87/308 (28%), Positives = 155/308 (50%), Gaps = 14/308 (4%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           +  ++L+ L +E+G SK T+ +Y  D   F  F A + ++    ++I  ++Y ++R +I 
Sbjct: 7   DITSFLEYLLLEKGYSKHTIIAYRKDLIDFSSFCALHFDQ----ESITVVAYAQVRRWIV 62

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                 I + ++ R +S +KSF K+L+K      + +   ++LK +  +      K+   
Sbjct: 63  SLVAADISNSTINRKVSSLKSFYKFLQKSSQIENNPLSKHKSLKVAKRVQVPFTAKEINA 122

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           +++N+    +    +   RN  ++ LLY  G+R +E +S+   ++     T+++ GK +K
Sbjct: 123 VLENM----AGGQNFEACRNRLLVELLYSTGMRRAELISIQEVDVNCADQTIKVVGKRNK 178

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R VP+L SV + I EY  L       +         +G  L   +  R I      +  
Sbjct: 179 ERYVPILSSVLQTIKEYQGLKATIDGGSGFF--LITSKGNKLYETLVYRIINSYFSKISS 236

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            +  + H LRHSFATHLL+ G DL S++ +LGH  L++TQ+YT+    N  D +  IY Q
Sbjct: 237 KVKKSPHILRHSFATHLLNEGADLNSVKELLGHSSLASTQVYTH----NSLDAIKNIYKQ 292

Query: 317 THPSITQK 324
            HP   +K
Sbjct: 293 AHPRSNKK 300


>gi|299141119|ref|ZP_07034256.1| tyrosine recombinase XerD [Prevotella oris C735]
 gi|298577079|gb|EFI48948.1| tyrosine recombinase XerD [Prevotella oris C735]
          Length = 293

 Score =  229 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 71/304 (23%), Positives = 137/304 (45%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L  E   S+LT+++Y  D R F  F            +   +    +R ++ +
Sbjct: 3   IDKFLDYLRFECNRSELTVKNYGDDLRSFEKFFRDLK----NPVSWESVDLDVVRNWMER 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S+ R LS ++SF ++   RK+  +  +  +   KK   LP+ L EK+   L
Sbjct: 59  MMDEGNNAASINRRLSALRSFYRFALSRKLVDKDPVHGITGPKKGKPLPQFLKEKEMDRL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++           + D R+ AI+   Y  G+R+SE   L  + +   +  L++ GK +K 
Sbjct: 119 LE----REYWTRSFEDVRDRAIIMTFYETGIRLSELTGLDDKMVDFAEYQLKVTGKRNKQ 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RI+P    +   + +Y +    ++   +   LF    G+ ++  + +  +++    +   
Sbjct: 175 RIIPFGEELCTTLRDYMESRDREVG-RLSEALFVTDEGQRMSASLVRERVKRSLSKVCTL 233

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FAT +L++   + S++ +LGH  LSTT+IYT+   +     +   Y   
Sbjct: 234 KKRSPHVLRHTFATAMLNHKAGIESVKKLLGHESLSTTEIYTHTTFEQ----LKREYSIA 289

Query: 318 HPSI 321
           HP  
Sbjct: 290 HPRA 293


>gi|114049118|ref|YP_739668.1| tyrosine recombinase XerC [Shewanella sp. MR-7]
 gi|123131002|sp|Q0HQJ4|XERC_SHESR RecName: Full=Tyrosine recombinase xerC
 gi|113890560|gb|ABI44611.1| tyrosine recombinase XerC [Shewanella sp. MR-7]
          Length = 299

 Score =  229 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 81/310 (26%), Positives = 146/310 (47%), Gaps = 19/310 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q +   ++ ER LS  T+++Y  + ++    L            +  +     +  ++K
Sbjct: 9   LQQFETYMQSERQLSAHTVRNYMYELQRGSELLPEGV-------DLLNVGREHWQQVLAK 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + +  RSL   LS IK + ++L +  +   +    +   K++  LP+ ++      L
Sbjct: 62  LHRKGLSPRSLSLWLSAIKQWGEFLLRSGVIELNPAKGLSAPKQAKPLPKNIDVDSISHL 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +             +  R+ AI+ L Y  GLR++E  +L   ++  DQ  +R+ GKG+K 
Sbjct: 122 L------AIEGNDPLTLRDKAIMELFYSSGLRLAELAALDLSSVQYDQHEVRVLGKGNKE 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RIVP+     +AI  +          +    LF   +GK L+    Q  + +  +   L 
Sbjct: 176 RIVPVGRYAIEAISAWLKCRKQISCEDN--ALFVTEKGKRLSHRSIQARMSKWGQEQALS 233

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           +    H LRHSFATH+L +  DLR++Q +LGH  LSTTQIYT+++ ++    + ++YD  
Sbjct: 234 MRVHPHKLRHSFATHMLESSADLRAVQELLGHENLSTTQIYTSLDFQH----LAKVYDNA 289

Query: 318 HPSITQKDKK 327
           HP   ++  K
Sbjct: 290 HPRAKKQQDK 299


>gi|293189843|ref|ZP_06608557.1| tyrosine recombinase XerC [Actinomyces odontolyticus F0309]
 gi|292821258|gb|EFF80203.1| tyrosine recombinase XerC [Actinomyces odontolyticus F0309]
          Length = 285

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 82/292 (28%), Positives = 138/292 (47%), Gaps = 10/292 (3%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-LSYTEIRAFISKRRTQKIGDRSLKR 90
           S  T+ +Y  D    + FL+   +   T + +R+ L+   +R+++++         ++ R
Sbjct: 2   SPHTVSAYLGDLHSLMEFLSL--DADATPEQLREALTQRAVRSWLARTLADGGARSTIAR 59

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
             + I++F  +  +  I        + + +    LP  L+E  A  L++      +    
Sbjct: 60  HTAAIRNFTSWAMREGILVSDPAALLSSPRADQLLPSPLDESDARVLLNTARDEAAAGG- 118

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
               RN AIL L Y CGLR+SE  +L   ++  +  T+R+ GKG+K R+VP  P    A+
Sbjct: 119 ASQIRNWAILELTYACGLRVSEVCALDIPSLNREALTVRVVGKGNKERVVPYGPPAADAL 178

Query: 211 LEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
             +       L        LF G +G  ++P + +  + +     G+      H LRHS 
Sbjct: 179 DHWLVRGRPQLAGERSGNALFLGDKGGRIDPRIVRSMVHKTAARAGVH-DIAPHGLRHST 237

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           ATHLL  G DLR++Q +LGH  LSTTQ YT+V++      +  IY + HP  
Sbjct: 238 ATHLLQGGADLRAVQEMLGHSSLSTTQRYTHVDTAR----LSAIYQRAHPRA 285


>gi|208779508|ref|ZP_03246853.1| phage integrase family protein [Francisella novicida FTG]
 gi|208744469|gb|EDZ90768.1| phage integrase family protein [Francisella novicida FTG]
          Length = 292

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 86/310 (27%), Positives = 152/310 (49%), Gaps = 21/310 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+   N+L NL   +  S+ T+ +Y+ D  Q          + ++ + I  L++++I  +
Sbjct: 4   LEHINNFLDNLLYLKNYSQETINNYQRDLLQL--------NQALSDKNIISLTHSDILIW 55

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I K   Q    ++L+R LS ++SF  +L   +I +++    ++  K S  LP+ +N  + 
Sbjct: 56  IKKLHAQGNSPKTLQRKLSSVRSFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDEL 115

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D       + +  I+AR+ A   LLY CG+R+SE  S+  + I   Q  +R+ GKG
Sbjct: 116 AYLLDV------NPSNDIEARDIACFDLLYSCGIRLSELSSVELKYISISQKNIRVTGKG 169

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +K RIV         +  +  +   D        LF    GK L     Q+ +    +  
Sbjct: 170 NKQRIVYFGTKTLSNLNRWLKIR--DSLKPSSDYLFISRDGKHLTNRSIQKRLEIFAQKY 227

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
                   H LRHSFA+H+L +  DL +++ +LGH  +S+TQIYT++N +     +  ++
Sbjct: 228 A-SRHIHPHMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQ----LASVF 282

Query: 315 DQTHPSITQK 324
           D+ HP   +K
Sbjct: 283 DKAHPRAKKK 292


>gi|323344611|ref|ZP_08084835.1| tyrosine recombinase XerC [Prevotella oralis ATCC 33269]
 gi|323093881|gb|EFZ36458.1| tyrosine recombinase XerC [Prevotella oralis ATCC 33269]
          Length = 293

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 66/304 (21%), Positives = 134/304 (44%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L  ER  S  T+++Y+ D + F  +     +E     +   +    IR ++  
Sbjct: 3   IEEFLDYLRYERNRSAQTVKNYDEDLKAFESYFKKINKE----LSWESVDSDVIRGWMES 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S+ R LS ++S  ++   +          +   K++  LP+ L E++    
Sbjct: 59  MMDKGNIATSINRRLSALRSLYRFALSKGYVDSDPAYGVVGPKRAKPLPQFLKEREM--- 115

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            D +L  T  +  + + R   IL + Y  G+R+SE + L   ++       ++ GK +K 
Sbjct: 116 -DELLGLTVWKDGFKNVRAYTILIMFYETGMRLSELVGLNDSSVDFVNRQFKVSGKRNKQ 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R++P    +  ++  Y +L    +       LF    GK +N    +  +++    +   
Sbjct: 175 RLIPFGDELDTSLRMYLELRNESVG-RKSDALFVTSEGKRMNQDQVRYEVKKNLSKVCTL 233

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T H LRH+FAT +L++  ++ S++ +LGH  + TT++YT+   +     +  +Y   
Sbjct: 234 KKKTPHVLRHTFATAMLNHDANIESVRKLLGHASVGTTEVYTHTTFEQ----LKRVYKNA 289

Query: 318 HPSI 321
           HP  
Sbjct: 290 HPRA 293


>gi|297748477|gb|ADI51023.1| hypothetical protein CTDEC_0347 [Chlamydia trachomatis D-EC]
 gi|297749357|gb|ADI52035.1| hypothetical protein CTDLC_0347 [Chlamydia trachomatis D-LC]
          Length = 317

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 92/319 (28%), Positives = 141/319 (44%), Gaps = 22/319 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI------------- 60
           ++     +L  L+  +  S  TL++Y  D      FL   ++   T              
Sbjct: 3   MITSFYAFLDYLKNMKASSLHTLRNYCMDLSSLKCFLEKKSDLSPTPPLSLHDNTYDYPP 62

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            +    +   IR ++ ++       R+++R LS IKSF ++  K ++  E+    +R  +
Sbjct: 63  LSFSLFTKDNIRLYLLEQIQTHHSKRTVRRRLSAIKSFARFCVKNQLIPENPAEMIRGPR 122

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LP  L  +Q L L+           K    R+  +L L Y  GLRISE  +L   +
Sbjct: 123 LPQELPSPLTYEQVLALM-----AAPELDKVTGFRDRCLLELFYSSGLRISEITALNRAD 177

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I      L I+GKG K RIVP+     + + +Y +              F    GK L+ 
Sbjct: 178 IDFQSHLLHIRGKGKKERIVPMTKVAVQWLQDYLNHPDRASVEQDHQACFLNRFGKRLST 237

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               R  +Q     GL  S T HT+RH+ ATH L  G DL++IQ +LGH  L TT IYT+
Sbjct: 238 RSIDRKFQQYLLKTGLSGSITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTH 297

Query: 301 VNSKNGGDWMMEIYDQTHP 319
           V+ K       +I+D+THP
Sbjct: 298 VSMKLK----KQIHDETHP 312


>gi|269977906|ref|ZP_06184860.1| tyrosine recombinase XerC [Mobiluncus mulieris 28-1]
 gi|269933872|gb|EEZ90452.1| tyrosine recombinase XerC [Mobiluncus mulieris 28-1]
          Length = 361

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 88/351 (25%), Positives = 150/351 (42%), Gaps = 54/351 (15%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFL------------------AFYTEEKITIQ 61
            + + L   RG S  +L++Y  D R+ L FL                     +       
Sbjct: 16  EFAEYLRANRGFSPHSLRAYLGDLRELLEFLCPPVALVPAAGLAAPPRSGESSGRGFAAP 75

Query: 62  TIRQL--SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
            + +       IRA++     +     +L R ++  ++F  +  K    +  + L + + 
Sbjct: 76  ELSRALSDPARIRAWLGDMSRRGASRATLARRVASFRTFSAWALKHGFMSCDSGLRLHSP 135

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHT--------------------------SHETKWID 153
           K  NSLP  LNE Q   L++   L                             +    + 
Sbjct: 136 KPDNSLPTVLNEAQVARLLNTARLQAYSLGVHQKASKSQTEIPDSIPGDSAVPYRANPVG 195

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            R+ A+L LLY  G+R+SE   L  ++I   ++T+R+ GKG K R+ P       A+ EY
Sbjct: 196 LRDWALLELLYATGVRVSELTGLRLRDISRSEATIRVCGKGGKERVAPYGIPAGIALDEY 255

Query: 214 YDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            +     L   + +    +F G++G  L+  + +  + ++    G+P     H LRH+ A
Sbjct: 256 LEQGRPVLVSPDRDAGEWVFLGVKGGRLDTRLVRGMLHRMTAVAGVP-DLGPHGLRHTAA 314

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           THLL+ G DLR +Q ILGH  L TTQ YT++++ +    + ++Y Q HP  
Sbjct: 315 THLLNGGADLRCVQEILGHASLGTTQRYTHLSTTH----LRQVYLQAHPHA 361


>gi|89068929|ref|ZP_01156311.1| tyrosine recombinase XerD [Oceanicola granulosus HTCC2516]
 gi|89045510|gb|EAR51574.1| tyrosine recombinase XerD [Oceanicola granulosus HTCC2516]
          Length = 315

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 82/325 (25%), Positives = 137/325 (42%), Gaps = 23/325 (7%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
                ++   Q +L+    E   +  T  +Y  D + F  +L                + 
Sbjct: 3   PADQPMVHWIQAFLEAQAAELDAATNTQLAYARDLKDFAAWLERR------PAHFADAAQ 56

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           + + A++       +   +  R LS IK   ++  +     ++  + +    +   LP+ 
Sbjct: 57  SHVEAYLIDCEAIGLARATRARRLSAIKQLYRFAFEEGWRADNPAIRIAGPGREKRLPKT 116

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+ ++   L     L  +  T     RN+ ++ LLY  G+R+SE +SL       D   L
Sbjct: 117 LSVEEVDRL-----LAAARTTPRDAVRNTCLVELLYATGMRVSELVSLPVAATRGDPRML 171

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYY------DLCPFDLNLNIQLPLFRGI-RGKPLNPG 241
            ++GKG K R+VPL    R A+ E+       +             LF    +   L   
Sbjct: 172 LVRGKGGKERMVPLSQGARAAVAEWLVARDAAEAAAQARGKAASRFLFPSHGKDGHLTRH 231

Query: 242 VFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            F   I+++    G+ P   T HTLRH+FATHLL  G DLRSIQ++LGH  + TT+IYT+
Sbjct: 232 RFFTLIKEIAVLGGVSPEKVTPHTLRHAFATHLLEGGADLRSIQTLLGHADVGTTEIYTH 291

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKD 325
           V        +  +    HP +  +D
Sbjct: 292 VLDAR----LRALVLDHHPLVQPRD 312


>gi|34580584|ref|ZP_00142064.1| integrase/recombinase [Rickettsia sibirica 246]
 gi|229586627|ref|YP_002845128.1| site-specific tyrosine recombinase XerD [Rickettsia africae ESF-5]
 gi|28261969|gb|EAA25473.1| integrase/recombinase [Rickettsia sibirica 246]
 gi|228021677|gb|ACP53385.1| Tyrosine recombinase XerD [Rickettsia africae ESF-5]
          Length = 306

 Score =  228 bits (581), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 93/312 (29%), Positives = 152/312 (48%), Gaps = 27/312 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+ L  ER LSK ++ SY+ D   F  +LA +   ++ I      +   IR +I    
Sbjct: 6   QFLEMLLAERALSKNSILSYKRDLFDFQNYLAKHKLSELNI------TTENIRDWIEYLA 59

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           +  +  RS+ R +S IKS+ ++L     T  + +LN+   K  N LP  L+  Q  +L++
Sbjct: 60  SNDLQARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIAQIKSLLE 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-------QSTLRIQG 192
               H S +      R +A+++LLY  GLR+SE +SL   +I+ +       +    + G
Sbjct: 120 ----HCSQDNSPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNKTSKGEVRKIFSVLG 175

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIR-GKPLNPGVFQRYIR 248
           KG+K R++ +      +I +Y  +    +N       + LF        +    F   ++
Sbjct: 176 KGNKERVIVINEQAVISIAKYLAIRGVFVNKAKPRNLIYLFPSSALAGYMTRQNFAILLK 235

Query: 249 QLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
               Y GL P   + H LRHSFA+HLL  G DLR IQ +LGH  +STTQIYT++ + +  
Sbjct: 236 SAALYAGLNPEYISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQTNHLK 295

Query: 308 DWMMEIYDQTHP 319
             ++      HP
Sbjct: 296 KALL-----HHP 302


>gi|75674591|ref|YP_317012.1| tyrosine recombinase XerD [Nitrobacter winogradskyi Nb-255]
 gi|74419461|gb|ABA03660.1| tyrosine recombinase XerD subunit [Nitrobacter winogradskyi Nb-255]
          Length = 319

 Score =  228 bits (581), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 89/314 (28%), Positives = 141/314 (44%), Gaps = 22/314 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L  E+G  + TL +Y  D      FLA      +  +T        +R +++    
Sbjct: 15  FLDMLAAEQGAGENTLDAYRRDLEDLSAFLARARRNFVIAET------QTLRDYLNDLDL 68

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV-- 138
           +     S+ R LS ++   ++L   ++ ++     +   K+  SLP+ L+      L+  
Sbjct: 69  RGFKSSSVARRLSAMRHLFRFLLSERVRSDDPAAILSGPKRGRSLPKVLSIADVDRLLGR 128

Query: 139 ---DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
              D   L      +   AR   +L +LY  GLR+SE +SL       D   + ++GKGD
Sbjct: 129 AKADAESLDAPPARRLRAARLYCLLEVLYATGLRVSELVSLPLSAARRDARMIVVRGKGD 188

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNI-----QLPLFRGIRGK-PLNPGVFQRYIRQ 249
           K R+VPL  + R+A+ +Y                 Q  LF        L    F R +++
Sbjct: 189 KERLVPLNNASRQAMADYLQTMADQRGAGKAASPRQSWLFPSFGESGHLTRQHFARELKE 248

Query: 250 LRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           L    GL P   + H LRH+FA+HLL NG DLR +Q++LGH  +STTQIYT+V  +    
Sbjct: 249 LAAAAGLAPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER--- 305

Query: 309 WMMEIYDQTHPSIT 322
            +  +    HP   
Sbjct: 306 -LKSLVRDLHPLAE 318


>gi|325954362|ref|YP_004238022.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922]
 gi|323436980|gb|ADX67444.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922]
          Length = 301

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 84/312 (26%), Positives = 151/312 (48%), Gaps = 12/312 (3%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ++  Q +L  L+ E+  S  T+++Y  D   FL F       + +  +I +     IR+F
Sbjct: 1   METIQRFLDYLQYEKRYSLHTIKNYRRDLDDFLSFYQI----EESSDSIEKAEKNHIRSF 56

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I     + I +RS+ R LS +++F  YL K    T S +L +++LK    +     EK+ 
Sbjct: 57  IISLSDKNISERSINRKLSSLRTFYIYLIKTGQLTTSPMLQIKSLKTKKEVIIPYTEKEM 116

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L +   L       +   R+  ++ L Y  G+R  E + LT   +  +Q  +++ GK 
Sbjct: 117 QRLFE---LENIFPDDFDGIRDRLMMNLFYQTGIRRGELIQLTLPQLRIEQKEIKVLGKR 173

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +K R++P+  ++      Y  +   ++  +  L LF    G+ L        +     ++
Sbjct: 174 NKERVLPIGENLVSEFTRYLKVRK-EVVGSENLTLFIKNNGQALYEKFVYERVNYYLSFI 232

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
                 + H LRH+FAT LL NG DL +++ ILGH  LS+TQIYT+ + +N    + +++
Sbjct: 233 TEKHKKSPHVLRHTFATQLLENGADLNALKEILGHSSLSSTQIYTHSSIQN----LKKVF 288

Query: 315 DQTHPSITQKDK 326
           +  HP   +KD+
Sbjct: 289 NNAHPRGRKKDE 300


>gi|256420742|ref|YP_003121395.1| integrase family protein [Chitinophaga pinensis DSM 2588]
 gi|256035650|gb|ACU59194.1| integrase family protein [Chitinophaga pinensis DSM 2588]
          Length = 314

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 87/320 (27%), Positives = 154/320 (48%), Gaps = 17/320 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S  L      +L  +++E+  S  T  +Y+ D  QF IFL     +     +++ +S+ 
Sbjct: 1   MSEVLHPVANQFLAYIQLEKRYSAHTFTAYQQDLTQFFIFLRSQYGD----VSLQGISHL 56

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R +++    + I  +S+ R +S +KSF KY  +  +   S +  +   K    LP  +
Sbjct: 57  HVRTWLAWLMEEGIVAKSVNRKISTLKSFFKYAMRHGVVVTSPMTKVTAPKTGKRLPGFI 116

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARN------SAILYLLYGCGLRISEALSLTPQNIMD 183
           +EK    + DN  +    E + I A +        I  LLY  G+R+SE + L  +++  
Sbjct: 117 DEKGMEAVEDNRSMRRGQEGRPIFADDLEGKTHRLIFELLYHTGIRLSELIGLQERHVDI 176

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGV 242
              TL++ GKG+K RI+P+  ++R  I  Y  +    L +  +  L    R  K L P  
Sbjct: 177 SNLTLKVLGKGNKERIIPISKNLRDEIKGYRVMRDKALEMPDKEVLLVNPRSGKKLYPRY 236

Query: 243 FQRYIRQLRRYLGLPL--STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               ++       +      + H LRH+FATHL +NG DL +++ +LGH  L++TQ+YT+
Sbjct: 237 VYNVVKGYLTDHEITTISRRSPHILRHTFATHLTNNGADLNAVKELLGHASLASTQVYTH 296

Query: 301 VNSKNGGDWMMEIYDQTHPS 320
               N  + + + Y + HP 
Sbjct: 297 ----NSIEKLKDAYRKAHPK 312


>gi|297181069|gb|ADI17268.1| site-specific recombinase xerd [uncultured alpha proteobacterium
           HF0070_17D04]
          Length = 361

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 78/304 (25%), Positives = 137/304 (45%), Gaps = 15/304 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +LQ +  +RGL+  ++ +YE D    L  L+         +        ++R  +++  
Sbjct: 67  EFLQAMAADRGLAANSIAAYERDLASCLESLSQAG------RHFDSCDADDLRCLLAEWT 120

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +  RS+ R LS ++  + +L + ++  +     + N K+  +LP++L+E++   L+ 
Sbjct: 121 LSGLAARSVARRLSALRQMMAWLVEERVRPDDPCRWIDNPKQPAALPKSLSEEEITALIT 180

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                            +A+L LLY  GLR+SE +SL       +   + + GKG K R+
Sbjct: 181 AARALAPAAEALRM---TAMLELLYATGLRVSELVSLPVDQFRRELEAVIVTGKGGKERL 237

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PL 258
           V +    R A   +               LF   R   ++   F   ++++    G+ P 
Sbjct: 238 VAMGTPARDATAAWMAARDATEAFVTSPYLFP-FRESHVSRQQFAAALKRVGAAAGIDPR 296

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H +RHSFATH+L+ G DLR +Q +LGH  +STTQIYT    K   D +  +    H
Sbjct: 297 RVSPHVVRHSFATHMLNRGADLRGLQMLLGHADISTTQIYT----KTRPDRLAGLVAAAH 352

Query: 319 PSIT 322
           P   
Sbjct: 353 PLAK 356


>gi|15892414|ref|NP_360128.1| site-specific tyrosine recombinase XerD [Rickettsia conorii str.
           Malish 7]
 gi|34222952|sp|Q92IC9|XERD_RICCN RecName: Full=Tyrosine recombinase xerD
 gi|15619566|gb|AAL03029.1| integrase/recombinase [Rickettsia conorii str. Malish 7]
          Length = 306

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 93/312 (29%), Positives = 152/312 (48%), Gaps = 27/312 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+ L  ER LSK ++ SY+ D   F  +LA +   ++ I      +   IR +I    
Sbjct: 6   QFLEMLLAERALSKNSILSYKRDLFDFQNYLAKHKLSELNI------TTENIRDWIEYLA 59

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           +  +  RS+ R +S IKS+ ++L     T  + +LN+   K  N LP  L+  Q  +L++
Sbjct: 60  SNDLQARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIAQIKSLLE 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-------QSTLRIQG 192
               H S +      R +A+++LLY  GLR+SE +SL   +I+ +       +    + G
Sbjct: 120 ----HCSQDNSPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNKTSKGEVRKIFSVLG 175

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIR-GKPLNPGVFQRYIR 248
           KG+K R++ +      +I +Y  +    +N       + LF        +    F   ++
Sbjct: 176 KGNKERVIVINEQAVISIAKYLTIRGVFVNKAKPRNLIYLFPSSALAGYMTRQNFAILLK 235

Query: 249 QLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
               Y GL P   + H LRHSFA+HLL  G DLR IQ +LGH  +STTQIYT++ + +  
Sbjct: 236 SAALYAGLNPEYISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQTNHLK 295

Query: 308 DWMMEIYDQTHP 319
             ++      HP
Sbjct: 296 KALLR-----HP 302


>gi|304322147|ref|YP_003855790.1| integrase/recombinase XerC [Parvularcula bermudensis HTCC2503]
 gi|303301049|gb|ADM10648.1| integrase/recombinase XerC, putative [Parvularcula bermudensis
           HTCC2503]
          Length = 315

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 101/306 (33%), Positives = 160/306 (52%), Gaps = 8/306 (2%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L++LE +   S  T+++Y     +F  F   +   ++ +  I +    + RAF++ RR
Sbjct: 18  AFLRHLETQTRASPYTIRNYRQTIDRFSDFARRHRGGEVDLVDIARWRTADFRAFLADRR 77

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + I   +L+  LS +K   +++ +R  +  + +  +R  K    LPR + +        
Sbjct: 78  AEGIAPPTLRLDLSALKQLFRFIDRRTGSETTPLYALRTPKAPRRLPRPIGQ----APAL 133

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            +     H   W   R+ A+  LLYG GLR+SEAL+L  +++     +LR+ GKG K+R 
Sbjct: 134 ALAEAAEHTQDWTVHRDRALFALLYGAGLRLSEALALDRRDLPPRGVSLRVLGKGAKMRD 193

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPLL  VR  I  Y D     +  N    LF G +G+ L+PGV QR +R+ R  LGL   
Sbjct: 194 VPLLDVVRTRIDTYLDHRDKAIPGNTAPALFLGAKGRRLSPGVAQRALRRERATLGLSDD 253

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T H LRH+FATHLL+ G DLR++Q++LGH  L TTQ YT ++       ++ ++   HP
Sbjct: 254 ATPHALRHAFATHLLAAGTDLRTLQTLLGHSSLKTTQGYTEID----AGRLLAVHAAAHP 309

Query: 320 SITQKD 325
                D
Sbjct: 310 RGRSSD 315


>gi|262202039|ref|YP_003273247.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262085386|gb|ACY21354.1| integrase family protein [Gordonia bronchialis DSM 43247]
          Length = 304

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 136/305 (44%), Gaps = 13/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +  +L +E G S  T+++Y  D R  + F                +  T +RA++++
Sbjct: 12  LDEFADHLRLEMGRSPHTVRAYVGDVRGLIAFAGARG------VATADIDLTLLRAWLAE 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     ++ R +S +K+F  +  +  + ++     +R  K   +LP  L   Q   +
Sbjct: 66  HTRRGAARTTIARQVSSVKTFCAWAVREGLMSDDPSHRLRAPKAHRTLPAVLAPAQVPDV 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +         +   I  R++ I+ +LY  G+R+ E   L   ++  D+  LR+ GKGDK 
Sbjct: 126 IAAAAAERP-QGDPIALRDTVIVEVLYAGGIRVGELCGLDVDDVDRDRRVLRVIGKGDKE 184

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R VP       A+  +       L        L  G RG  L+  + +  + +     G 
Sbjct: 185 RTVPYGAPAAVALDAWLRHGRPALATERSGAALLLGARGGRLDQRMARTVVTRAVEQAGG 244

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           P     H LRHS ATHLL  G DLR +Q +LGH  L+TTQIYT+V+ +     +  +++Q
Sbjct: 245 PA-MGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQIYTHVSVER----LRAVHNQ 299

Query: 317 THPSI 321
            HP  
Sbjct: 300 AHPRA 304


>gi|257458423|ref|ZP_05623565.1| tyrosine recombinase XerC [Treponema vincentii ATCC 35580]
 gi|257444227|gb|EEV19328.1| tyrosine recombinase XerC [Treponema vincentii ATCC 35580]
          Length = 304

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 73/316 (23%), Positives = 135/316 (42%), Gaps = 24/316 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +  +++L      R  S+ T+++Y  D + F  +LA             ++S  ++R 
Sbjct: 1   MEQVFEDYLAYSAGVRHFSEKTIEAYRNDLKLFSAWLAE------NELPFTEVSKVQVRI 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F++    +     S+ R LS ++   +Y  ++ + T +    +RNLK+ + LPR L   +
Sbjct: 55  FVADLGNRHFAPASVNRILSCVRGLYRYALQKGLCTTNPAALIRNLKQPDKLPRFLFPDE 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           A    +              AR++A+   LY  G R +E   L   ++  +     ++GK
Sbjct: 115 AERFCEFPKEAGI----LWYARDAALFSSLYSTGCRAAELQGLKITDLKGECRWAIVRGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLN----------IQLPLFRGIRGKPLNPGVF 243
           G K R V      ++A+  Y       +              +  LF   RG  L     
Sbjct: 171 GSKERKVFFADFAQEAVQRYLTERAELIAYLKEQDGLKTPVAEEALFLNCRGGALTTQGI 230

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +  I +    L      T H  RHSFA+  ++ G D+R +Q +LGH  ++TTQ YT++ +
Sbjct: 231 RYIIDRYTALLPNYKKLTPHAFRHSFASMFITRGADIRVVQELLGHSNIATTQRYTHITA 290

Query: 304 KNGGDWMMEIYDQTHP 319
                 + ++Y + HP
Sbjct: 291 AQ----LQDLYHKAHP 302


>gi|255311152|ref|ZP_05353722.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           6276]
 gi|255317453|ref|ZP_05358699.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           6276s]
          Length = 315

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 92/319 (28%), Positives = 142/319 (44%), Gaps = 22/319 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI------------- 60
           ++     +L  L+  +  S  TL++Y  D      FL   ++   T              
Sbjct: 1   MITSFYAFLDYLKNMKASSLHTLRNYCMDLSSLKCFLEKKSDLSPTPPLSLHDNTYDYPP 60

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            +    +   IR ++ ++       R+++R LS IKSF ++  K ++  E+ +  +R  +
Sbjct: 61  LSFSLFTKDNIRLYLLEQIQTHHSKRTVRRRLSAIKSFARFCVKNQLIPENPVEMIRGPR 120

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LP  L  +Q L L+           K    R+  +L L Y  GLRISE  +L   +
Sbjct: 121 LPQELPSPLTYEQVLALM-----AAPELDKVTGFRDRCLLELFYSSGLRISEITALNRAD 175

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I      L I+GKG K RIVP+     + + +Y +              F    GK L+ 
Sbjct: 176 IDFQSHLLHIRGKGKKERIVPMTKVAVQWLQDYLNHPDRASVEQDHQACFLNRFGKRLST 235

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               R  +Q     GL  S T HT+RH+ ATH L  G DL++IQ +LGH  L TT IYT+
Sbjct: 236 RSIDRKFQQYLLKTGLSGSITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTH 295

Query: 301 VNSKNGGDWMMEIYDQTHP 319
           V+ K       +I+D+THP
Sbjct: 296 VSMKLK----KQIHDETHP 310


>gi|56696516|ref|YP_166873.1| tyrosine recombinase XerD [Ruegeria pomeroyi DSS-3]
 gi|56678253|gb|AAV94919.1| tyrosine recombinase XerD [Ruegeria pomeroyi DSS-3]
          Length = 319

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 88/325 (27%), Positives = 143/325 (44%), Gaps = 21/325 (6%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +P   +    +    +L     E G +  TL +Y  D + F  +L           T+  
Sbjct: 1   MPAAPTHPH-QWISTFLDAQAAELGAANNTLLAYGRDLKDFTDWLERRG------ATLNG 53

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
                + A++     Q +   +  R LS IK   ++        ++  + ++   +  SL
Sbjct: 54  AERDTVEAYLVDCDAQGLARATRARRLSAIKQLYRFAFDEGWRADNPAIQIKGPGRLKSL 113

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P+ L   +   L++      +  T     RN+ ++ LLY  G+R+SE +SL       D 
Sbjct: 114 PKTLEVIEVDRLLEA--ARQTGRTSADRLRNTCLMELLYATGMRVSELVSLPATAARGDP 171

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF------DLNLNIQLPLFRGI-RGKPL 238
             L ++GKG K R+VPL P  R A+  +  +            +     LF    +   L
Sbjct: 172 RMLLVRGKGGKERMVPLSPPARAALAAWLTVRDAAEEDGARRGIARSPHLFPSRGKSGHL 231

Query: 239 NPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
               F   I++L    G+ P + T HTLRH+FATHLL+NG DLR+IQ++LGH  +STT+I
Sbjct: 232 TRHRFYLLIKELAVAGGVSPDTVTPHTLRHAFATHLLANGADLRTIQTLLGHADVSTTEI 291

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSIT 322
           YT+V        + E+    HP   
Sbjct: 292 YTHVLDAR----LTELVLDHHPLAR 312


>gi|120436726|ref|YP_862412.1| tyrosine recombinase XerC [Gramella forsetii KT0803]
 gi|117578876|emb|CAL67345.1| tyrosine recombinase XerC [Gramella forsetii KT0803]
          Length = 296

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 77/306 (25%), Positives = 154/306 (50%), Gaps = 13/306 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L++E+  +  T+ +Y+ D   F  F+    E+     TI ++SY++IR++I +
Sbjct: 3   FSAFLDYLQLEKKYAFHTITAYKADLNAFQDFIQNTFEQ----DTILEVSYSQIRSWIVE 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I +R++ R +S +K++ ++L K K    S +   + LK    +    +E++ +++
Sbjct: 59  LSESGISNRTINRKISSLKAYYRFLLKTKQIEFSPLAKHKALKTPKKIQIPFSEEEIVSV 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++N+      ++ +   R   I+ L Y  G+R  E +++   ++  ++  L++ GK  K 
Sbjct: 119 LENI-----DDSTYEGIRGRLIVELFYSTGIRRIELINIQLSDLDLERGVLKVLGKRSKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R +PL+ SV    ++Y +    +   +    LF   +G  +      R I      +   
Sbjct: 174 RYIPLISSVIDTAVKYLERRREEGVNHDSEFLFLTSKGDKIYESFVYRVINNYFSEVSGK 233

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           L  + H LRHSFATHLL+ G +L +++ +LGH  L+ TQ+YT+    N    + +I+   
Sbjct: 234 LKKSPHILRHSFATHLLNQGANLNAVKELLGHSSLAATQVYTH----NSIAELSKIHQNA 289

Query: 318 HPSITQ 323
           HP  ++
Sbjct: 290 HPRNSK 295


>gi|15605070|ref|NP_219854.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           D/UW-3/CX]
 gi|76789073|ref|YP_328159.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           A/HAR-13]
 gi|166154559|ref|YP_001654677.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           434/Bu]
 gi|166155434|ref|YP_001653689.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|237802772|ref|YP_002887966.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237804694|ref|YP_002888848.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255348711|ref|ZP_05380718.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis 70]
 gi|255503251|ref|ZP_05381641.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis 70s]
 gi|255506929|ref|ZP_05382568.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           D(s)2923]
 gi|301335822|ref|ZP_07224066.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           L2tet1]
 gi|34222768|sp|O84351|XERC_CHLTR RecName: Full=Tyrosine recombinase xerC
 gi|123606950|sp|Q3KM11|XERC_CHLTA RecName: Full=Tyrosine recombinase xerC
 gi|254799329|sp|B0B7R6|XERC_CHLT2 RecName: Full=Tyrosine recombinase xerC
 gi|254799330|sp|B0BBY1|XERC_CHLTB RecName: Full=Tyrosine recombinase xerC
 gi|3328768|gb|AAC67942.1| Integrase/recombinase [Chlamydia trachomatis D/UW-3/CX]
 gi|76167603|gb|AAX50611.1| DNA integration/recombination/inversion protein [Chlamydia
           trachomatis A/HAR-13]
 gi|165930547|emb|CAP04042.1| DNA recombination protein [Chlamydia trachomatis 434/Bu]
 gi|165931422|emb|CAP06996.1| DNA recombination protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|231272994|emb|CAX09906.1| DNA recombination protein [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274006|emb|CAX10799.1| DNA recombination protein [Chlamydia trachomatis B/Jali20/OT]
 gi|289525388|emb|CBJ14865.1| DNA recombination protein [Chlamydia trachomatis Sweden2]
 gi|296434940|gb|ADH17118.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           E/150]
 gi|296435866|gb|ADH18040.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           G/9768]
 gi|296436792|gb|ADH18962.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           G/11222]
 gi|296437726|gb|ADH19887.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           G/11074]
 gi|296438660|gb|ADH20813.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           E/11023]
 gi|297140225|gb|ADH96983.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           G/9301]
          Length = 315

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 92/319 (28%), Positives = 141/319 (44%), Gaps = 22/319 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI------------- 60
           ++     +L  L+  +  S  TL++Y  D      FL   ++   T              
Sbjct: 1   MITSFYAFLDYLKNMKASSLHTLRNYCMDLSSLKCFLEKKSDLSPTPPLSLHDNTYDYPP 60

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            +    +   IR ++ ++       R+++R LS IKSF ++  K ++  E+    +R  +
Sbjct: 61  LSFSLFTKDNIRLYLLEQIQTHHSKRTVRRRLSAIKSFARFCVKNQLIPENPAEMIRGPR 120

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LP  L  +Q L L+           K    R+  +L L Y  GLRISE  +L   +
Sbjct: 121 LPQELPSPLTYEQVLALM-----AAPELDKVTGFRDRCLLELFYSSGLRISEITALNRAD 175

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I      L I+GKG K RIVP+     + + +Y +              F    GK L+ 
Sbjct: 176 IDFQSHLLHIRGKGKKERIVPMTKVAVQWLQDYLNHPDRASVEQDHQACFLNRFGKRLST 235

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               R  +Q     GL  S T HT+RH+ ATH L  G DL++IQ +LGH  L TT IYT+
Sbjct: 236 RSIDRKFQQYLLKTGLSGSITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTH 295

Query: 301 VNSKNGGDWMMEIYDQTHP 319
           V+ K       +I+D+THP
Sbjct: 296 VSMKLK----KQIHDETHP 310


>gi|170747111|ref|YP_001753371.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
 gi|170653633|gb|ACB22688.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
          Length = 291

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 87/306 (28%), Positives = 137/306 (44%), Gaps = 21/306 (6%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
            L  ERG    TL +Y  D   +L +LA       +   +  +    +RAF+    T+ +
Sbjct: 1   MLAAERGAGLNTLSAYRRDLDDYLGYLAR------SGTALGDVDAGTLRAFLIDLETRGL 54

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
              S  R LS ++ F K+L           + +   ++  +LP+ L+  +   L+     
Sbjct: 55  KASSAARRLSCVRGFHKFLYAEGGAESDPSVAVSGPRRGRALPKVLSIAEVDRLLATAQA 114

Query: 144 HTSHETKWIDARNS----AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
               +     AR +     +L LLY  GLR+SE ++L        +  L ++GKG + R+
Sbjct: 115 AAGADQPPGPARRARRMVCLLELLYATGLRVSELVALPRTAGASRERYLIVRGKGGRERL 174

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRRYLGL-P 257
           VPL  + R A+  +    P D        LF        L    F R ++ L    GL P
Sbjct: 175 VPLTEAARAAMAAHLPAVPED-----SPWLFPADSDSGYLTRQAFARDLKVLAAAAGLHP 229

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FA+HLL NG DLR +Q +LGH  +STTQIYT+V  +     +  +    
Sbjct: 230 DRVSPHVLRHAFASHLLQNGADLRIVQELLGHADISTTQIYTHVLDER----LKAMVRDL 285

Query: 318 HPSITQ 323
           HP + +
Sbjct: 286 HPLMDR 291


>gi|254796542|ref|YP_003081378.1| tyrosine recombinase XerD [Neorickettsia risticii str. Illinois]
 gi|254589779|gb|ACT69141.1| tyrosine recombinase XerD [Neorickettsia risticii str. Illinois]
          Length = 301

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 80/315 (25%), Positives = 155/315 (49%), Gaps = 28/315 (8%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  + +L+ + +ER  +  T+ SY  D R    FL            ++  S  ++  +I
Sbjct: 7   KYVEQFLEKILVERNATLNTISSYRTDLRLLGAFLKKKG--------LKDASKEDLYGYI 58

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +  R Q++ + +++R  +  + F  +L   KI++ +    +   KK+  LPR L +++ L
Sbjct: 59  ADLRAQQLSNATIRRKTATFRQFFSFLYSEKISSGNPAQTLELPKKTLVLPRYLTKEEVL 118

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQG 192
           +L+  +        +       AIL +LY  G+R+SE +++   +I   ++ Q  + I G
Sbjct: 119 SLLTFLETGQPATLRL-----YAILEILYSSGMRVSELINMKISDIRPLLNGQQHIIIVG 173

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG--IRGKPLNPGVFQRYIRQL 250
           KG K RI+P      + +  Y          +    LF G   + +P++     + +++L
Sbjct: 174 KGRKERILPFSKKAIQVLKLYLTSYQ-----SNSPWLFPGAGRKDRPMSRQRLGQLLKEL 228

Query: 251 RRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                + P   + H +RHSFATHLL NG D++ +Q +LGH +++TTQIYT+++     + 
Sbjct: 229 ALKCSIDPKRISPHVIRHSFATHLLDNGMDIKVVQDLLGHAQITTTQIYTHISQ----NK 284

Query: 310 MMEIYDQTHPSITQK 324
           + +  +  HP  ++K
Sbjct: 285 LHKEIEAKHPLSSKK 299


>gi|115522171|ref|YP_779082.1| tyrosine recombinase XerD [Rhodopseudomonas palustris BisA53]
 gi|115516118|gb|ABJ04102.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris
           BisA53]
          Length = 326

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 81/327 (24%), Positives = 138/327 (42%), Gaps = 29/327 (8%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + +L  L  E+G  K TL +Y  D      FL           ++       +RA++
Sbjct: 10  RLIELFLDMLAAEQGAGKNTLDAYRSDLADLAAFLGHAK------TSLSGADTHALRAYL 63

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                +     S+ R LS ++   ++L   ++  +     +   K+   LP+ ++     
Sbjct: 64  IDLDARGYKSASVARKLSALRHLFRFLLTERVRADDPAAILSGPKRGRGLPKVMSIADVD 123

Query: 136 TLVDNVLLHTSHETKWIDARN----SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            L+++         +  +         +L +LY  GLR+SE +SL       D   + ++
Sbjct: 124 RLLEHAKRLAEAPGRAGEQVRAARLYCLLEVLYATGLRVSELVSLPVSAARRDARMIVVR 183

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-------------QLPLFRGIRGK-P 237
           GKG+K R+VPL  S ++A+  Y +                       Q  LF        
Sbjct: 184 GKGNKERLVPLNESSKRAMAAYLEAIAAQDRERDKEKGKAKPGKAAAQKWLFPSSGESGH 243

Query: 238 LNPGVFQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           L    F R +++L    GL     + H LRH+FA+HLL NG DLR +Q++LGH  +STTQ
Sbjct: 244 LTRQHFARELKELAAAAGLSARLISPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQ 303

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSITQ 323
           IYT+V  +     +  +    HP   +
Sbjct: 304 IYTHVVEER----LKSLVRDLHPLAEK 326


>gi|311745481|ref|ZP_07719266.1| tyrosine recombinase XerD [Algoriphagus sp. PR1]
 gi|126578034|gb|EAZ82254.1| tyrosine recombinase XerD [Algoriphagus sp. PR1]
          Length = 294

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 152/305 (49%), Gaps = 13/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             +++  LE E+  S  T+ +Y  D  QFL F++    E    + I  + ++EIRA++  
Sbjct: 2   IDSFINYLEFEKKSSSHTVLAYRKDLEQFLEFVSVSFGE----EDILFVGHSEIRAWVID 57

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
               ++   ++ R ++ ++S+ K+L + ++ ++     +++LK    LP  L E      
Sbjct: 58  LVENQLSTTTVNRKIATLRSYYKFLLRSRVISKDPTYKLKSLKNPKKLPEFLQE----LT 113

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           + +VL  + +E  +   R+  +L  LY  G+R+SE   L   +I   +  +++ GK  K 
Sbjct: 114 ISSVLEESVYEENFEGQRDKMVLEFLYLTGVRLSELTGLKWGDINLSEKVVKVLGKRKKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF-RGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RI+PL   + + I+ Y  +     +   Q   F     GKP  P +  R +R+       
Sbjct: 174 RIIPLTNGLARNIISYQKVFEERFSKVSQSDYFIVSNNGKPSYPMMIYRVVRKYLDIFAQ 233

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHLL+ G DL +++ +LGH  L+ TQ+YT+    N  + +  +++Q
Sbjct: 234 TSKRSPHVLRHTFATHLLNKGADLNAVKDLLGHSNLAATQVYTH----NSLEKLKAVFEQ 289

Query: 317 THPSI 321
            HP  
Sbjct: 290 AHPKA 294


>gi|294102004|ref|YP_003553862.1| integrase family protein [Aminobacterium colombiense DSM 12261]
 gi|293616984|gb|ADE57138.1| integrase family protein [Aminobacterium colombiense DSM 12261]
          Length = 294

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 95/314 (30%), Positives = 152/314 (48%), Gaps = 21/314 (6%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +V FE  +   ++L  L +ERG S+ T+ +Y  D + +L F     +           + 
Sbjct: 1   MVKFEYDQLLDDFLDYLFLERGCSENTILAYNRDIKAWLDFCDKNDQPAYPP------NQ 54

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           T +  +      +     S +R+++ ++S+L+YL   K+  E   L    LK  +SLP  
Sbjct: 55  TYLERYQRSLHEEGKKRSSQQRAIASLRSWLRYLDSEKLVEEEVTLPTLPLK-GDSLPHI 113

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           LNE +   + +           ++  R+ AIL   YGCGLR SE  ++  ++I     TL
Sbjct: 114 LNEGEVERIFEAC-----SGNSFLALRDRAILETAYGCGLRASELCTICLRDIDFSGRTL 168

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKG K RI+P L  V + +  Y +    D ++     LF    G PL      R ++
Sbjct: 169 RIFGKGGKERIIPFLGEVSRRVGFYMEKARPDAHVQE---LFISKTGNPLRREDIWRIVK 225

Query: 249 QLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +     G+       H LRHSFATHLL  G DLR++Q +LGH  ++TT+ Y + + +   
Sbjct: 226 KRGAAAGISSSRLFPHILRHSFATHLLRRGMDLRTLQELLGHATIATTEKYVHFDLE--- 282

Query: 308 DWMMEIYDQTHPSI 321
             + +IYD+THP  
Sbjct: 283 --LRDIYDKTHPRA 294


>gi|222151085|ref|YP_002560239.1| tyrosine recombinase XerC protein [Macrococcus caseolyticus
           JCSC5402]
 gi|222120208|dbj|BAH17543.1| tyrosine recombinase XerC protein [Macrococcus caseolyticus
           JCSC5402]
          Length = 290

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 136/305 (44%), Gaps = 19/305 (6%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           + Q +L  L+ ER  S  T+ +Y+ D  QF+ FL             R   Y + R ++ 
Sbjct: 5   DLQRFLTYLKNERNFSDHTVTAYKNDVLQFIAFLEQEQ------LDFRTFEYRDARNYLV 58

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            +  + +   ++ R +S ++SF  +L        +  + + + K+   LP    EK+   
Sbjct: 59  SQYNKGLERTTVSRRISALRSFYGFLYDGD--ESNPFVQLVHPKQKKYLPEFFYEKEMTL 116

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L +++       +K    R+  IL +LY  G+R+SE + L          T+++ GKG K
Sbjct: 117 LFNSI-----DMSKPFAVRDKFILEMLYATGMRVSEFIELKSDAFDLGLMTVKVMGKGRK 171

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            RI+P      +++L+Y D             L    RG PL        +  L +    
Sbjct: 172 ERIIPYGAYAHRSLLDYMDFRN--SMTITHDYLLINQRGGPLTARGLTYILDMLIKRSSA 229

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRH+FATHLL+NG DLR++Q +LGH  LSTT  YT++   +    +   Y  
Sbjct: 230 DGHIHPHKLRHTFATHLLNNGADLRTVQELLGHVNLSTTSKYTHITKAH----LRNSYLS 285

Query: 317 THPSI 321
            HP  
Sbjct: 286 AHPRA 290


>gi|294085482|ref|YP_003552242.1| tyrosine recombinase XerD [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292665057|gb|ADE40158.1| tyrosine recombinase XerD [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 311

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 83/324 (25%), Positives = 149/324 (45%), Gaps = 18/324 (5%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+   L   ++ E     + +LQ L  +R  +  TL +Y  D       +          
Sbjct: 1   MDKTAL---INPEDNIHIEGFLQALSADRASAANTLAAYRRDLNDVATIMQGID------ 51

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           +T+   +  ++R  I     +++  RS+ R LS ++ F+ +L +  I  ++ +  + +  
Sbjct: 52  KTLHNATVDDLRQAIHAWHLRRLSARSVARRLSALRQFMGWLVEDNIRIDNPMRWIDSPS 111

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                P++L E + + L+       + E +    R  AIL + Y  GLR+SE + L    
Sbjct: 112 VPAPAPKSLTEAEVIALLK---AANALEPEAAAVRARAILEIFYATGLRVSEVVKLQVAQ 168

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
              +  +L + GKG + R+VPL  + + A+  + ++        +   LF  +   P+  
Sbjct: 169 FRRNPESLLVTGKGGRERVVPLGDAAKTAVQYWIEIRDRHAAALMSDYLFP-MGDGPMTR 227

Query: 241 GVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
             F   ++ L    G+ P   + H LRHSFATH+L+ G DLRS+Q++LGH  ++TTQIYT
Sbjct: 228 HQFASLLKSLALAAGINPDRVSPHVLRHSFATHMLNRGADLRSLQTLLGHADITTTQIYT 287

Query: 300 NVNSKNGGDWMMEIYDQTHPSITQ 323
                   D +  +    HP  T+
Sbjct: 288 ----ATRPDRLAGLVASAHPLATK 307


>gi|145220218|ref|YP_001130927.1| phage integrase family protein [Prosthecochloris vibrioformis DSM
           265]
 gi|145206382|gb|ABP37425.1| phage integrase family protein [Chlorobium phaeovibrioides DSM 265]
          Length = 325

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 93/317 (29%), Positives = 158/317 (49%), Gaps = 24/317 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L        LS+ T+ +Y  D RQF   L+           ++ L+  +IR F+++
Sbjct: 20  LEEFLFARRGRGNLSEHTVLAYRTDIRQFFSILS-------PPDDLQLLTAADIRFFMAE 72

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + +  RS+ R L+ ++SF  YL++R +   S +  +   +   S+P  L+  +   L
Sbjct: 73  LIRRGLQPRSIARKLASVRSFFHYLQERGLLGHSVLQTLSMPRYQRSVPAFLSVSETREL 132

Query: 138 VDNVLLHTSHE-------TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            + V+    +          ++  R++A L LLYGCGLRISE  +L   ++      +++
Sbjct: 133 FETVVPAARYRKGEAGLLDSFVLHRDAAALELLYGCGLRISELTALQDNDLELAGGFVKL 192

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL------FRGIRGKPLNPGVFQ 244
            GKG K RIVPL  +   A+ +Y+++      +     L      F   +GK + P + Q
Sbjct: 193 TGKGRKQRIVPLGLAAVSALKKYFEVRRNFFRMKRGTELVGNGYVFLTNKGKKIYPMLVQ 252

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R  R+    +        H LRHSFATHLL++G DL+S+  +LGH  LSTT+IYT+V+ +
Sbjct: 253 RMTRKYLLPVTEQKKKNPHILRHSFATHLLNSGADLQSVSEMLGHSNLSTTEIYTHVSFE 312

Query: 305 NGGDWMMEIYDQTHPSI 321
                + E+Y + HP  
Sbjct: 313 R----LKEVYRKAHPKA 325


>gi|157828362|ref|YP_001494604.1| site-specific tyrosine recombinase XerD [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165933070|ref|YP_001649859.1| site-specific tyrosine recombinase XerD [Rickettsia rickettsii str.
           Iowa]
 gi|157800843|gb|ABV76096.1| tyrosine recombinase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908157|gb|ABY72453.1| integrase/recombinase (XerD/RipX family) [Rickettsia rickettsii
           str. Iowa]
          Length = 306

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 93/317 (29%), Positives = 154/317 (48%), Gaps = 27/317 (8%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ++    +L+ L  ER LSK ++ SY+ D   F  +LA +   ++ I      +   IR +
Sbjct: 1   MEFIAQFLEMLLAERALSKNSILSYKRDLFDFQNYLAKHKLSELNI------TTENIRDW 54

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I    +  +  RS+ R +S IKS+ ++L     T  + +LN+   K  N LP  L+  Q 
Sbjct: 55  IEYLASNDLQARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIAQI 114

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-------QST 187
            +L++    H S +      R +A+++LLY  GLR+SE +SL   +I+ +       +  
Sbjct: 115 KSLLE----HCSQDNSPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNKTSKGEVRKI 170

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIR-GKPLNPGVF 243
             + GKG+K R++ +      +I +Y  +    +N       + LF        +    F
Sbjct: 171 FSVLGKGNKERVIVINEQAVISIAKYLAIRDVFVNKAKPRNLIYLFPSSALAGYMTRQNF 230

Query: 244 QRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              ++    Y GL P   + H LRHSFA+HLL  G DLR IQ +LGH  +STTQIYT++ 
Sbjct: 231 AILLKSAALYAGLNPEYISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQ 290

Query: 303 SKNGGDWMMEIYDQTHP 319
           + +    ++      HP
Sbjct: 291 TNHLKKALL-----HHP 302


>gi|162448003|ref|YP_001621135.1| integrase/recombinase, XerD-like protein [Acholeplasma laidlawii
           PG-8A]
 gi|161986110|gb|ABX81759.1| integrase/recombinase, XerD-like protein [Acholeplasma laidlawii
           PG-8A]
          Length = 306

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 93/316 (29%), Positives = 152/316 (48%), Gaps = 16/316 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +    ++   L IE+  S+ T  SY  D + F  FL    +E +    +        R +
Sbjct: 1   MDIISDYKDYLIIEKNFSEHTAISYINDVKGFEDFL---IKEGLAKDLLGARRPRLARNY 57

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           IS    Q    +++ R LS +K+F  YL  +++  E+   +++  K + +LP  ++E+  
Sbjct: 58  ISYLDNQDFKKKTIARKLSSLKNFYNYLIFKELIEENIFSDIKAPKVAKTLPHIIDEEAI 117

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L D++       +K +  RN  IL LLY CG+R SE ++L  ++I      + I GKG
Sbjct: 118 NYLFDSI-----DTSKPLGYRNLVILDLLYSCGVRASELINLEIKDIYLSSGQILIHGKG 172

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            K R + L   + + I  Y       L    +   Q  LF   +G PL     +  + Q+
Sbjct: 173 KKDRYIILHEKLIEEIRHYLSFVRVTLLSKGDDTNQQKLFINYKGGPLTVRGLRVILNQM 232

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  G   +   H LRH+FAT +L++G DLR +Q +LGH  L +TQIYT+V+ +     +
Sbjct: 233 IKDSGETYAIHPHMLRHAFATTMLNHGADLRVVQELLGHEHLKSTQIYTHVSKEQ----L 288

Query: 311 MEIYDQTHPSITQKDK 326
            E Y QTHP     +K
Sbjct: 289 KEKYMQTHPRNQHNEK 304


>gi|157964440|ref|YP_001499264.1| site-specific tyrosine recombinase XerD [Rickettsia massiliae MTU5]
 gi|157844216|gb|ABV84717.1| Tyrosine recombinase XerD [Rickettsia massiliae MTU5]
          Length = 306

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 93/317 (29%), Positives = 152/317 (47%), Gaps = 27/317 (8%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ++    +L+ L  ER LSK ++ SY+ D   F  +LA     ++ I      +   IR +
Sbjct: 1   MEFISQFLEMLLAERALSKNSILSYKRDLFDFHNYLATQKLSELNI------TTENIRDW 54

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I    +  +  RS+ R +S IKS+ K+L     T  + +LN+   K  N LP  L+  Q 
Sbjct: 55  IEYLASNDLQARSINRKISTIKSYYKFLISENHTAFNPVLNVDLPKYQNKLPEILSIDQI 114

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-------QST 187
            +L++    H S +      R +A+++LLY  G R+SE +SL   +I+ +       +  
Sbjct: 115 KSLLE----HCSQDNSPEGIRLNAMIHLLYASGFRVSELVSLKLADILTNKTSKGEVRKI 170

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIR-GKPLNPGVF 243
             + GKG+K R++ +      +I +Y  +    +N       + LF        +    F
Sbjct: 171 FSVLGKGNKERVIVINEQAVISIAKYLAIRDVFVNKAKPRNLIYLFPSSALAGYMTRQNF 230

Query: 244 QRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              ++    Y GL P   + H LRHSFA+HLL  G DLR IQ +LGH  +STTQIYT++ 
Sbjct: 231 AILLKSAALYAGLNPEHISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQ 290

Query: 303 SKNGGDWMMEIYDQTHP 319
           + +    ++      HP
Sbjct: 291 TNHLKKALL-----HHP 302


>gi|23465946|ref|NP_696549.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum
           NCC2705]
 gi|312132551|ref|YP_003999890.1| integrase/recombinase-like protein [Bifidobacterium longum subsp.
           longum BBMN68]
 gi|23326657|gb|AAN25185.1| probable integrase/recombinase protein similar to RV2894C
           [Bifidobacterium longum NCC2705]
 gi|311773487|gb|ADQ02975.1| Integrase/recombinase-like protein [Bifidobacterium longum subsp.
           longum BBMN68]
          Length = 357

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 83/368 (22%), Positives = 148/368 (40%), Gaps = 66/368 (17%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + S +   +  +++  L+  RGLS  TL++Y  D    L        E   +  + +++ 
Sbjct: 1   MSSTQFDGDIDSFVSYLKSNRGLSANTLKAYRADLTACLHLF-----ELRGVTDLNEITL 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++R++++   ++     S+ R    ++ F  +  +  +T       +      ++LP  
Sbjct: 56  DDLRSWMA-VESRDHARSSMARKTVAVRGFFAWAYEHGVTNTDPAATLMTPSIPSTLPAV 114

Query: 129 LNEKQALTLVDN---------------------------------------VLLHTSHET 149
           L E QA  L+D                                                 
Sbjct: 115 LTESQAEQLLDVAEQAVATNQYKGDGGAAAASGSGSGKAVGKTADKSADTVNRNEAPARA 174

Query: 150 KWID--------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
              D         RN+AIL LLY  G+R++E +S+   ++     T+++ GKG+K R+VP
Sbjct: 175 DKRDSARVVAESQRNAAILELLYATGIRVAELVSMDIVDVDFSNRTIKVTGKGNKQRVVP 234

Query: 202 LLPSVRKAILEYYDLCPFDL--------NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
                ++A+  + +     L               LF G RG  ++  + +  + +  R 
Sbjct: 235 FGLPAQRALETWLEQGRPVLARTATDAAKSRATNALFLGARGGRIDQRIARDIVHRAARE 294

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+P   + H LRHS ATH+L  G DLR +Q +LGH  L TTQ YT+V+ +     +   
Sbjct: 295 AGVP-DISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQ----LKNR 349

Query: 314 YDQTHPSI 321
           Y Q  P  
Sbjct: 350 YGQAFPRA 357


>gi|124514259|gb|EAY55773.1| putative phage integrase family protein [Leptospirillum rubarum]
          Length = 314

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 87/310 (28%), Positives = 141/310 (45%), Gaps = 19/310 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              + ++L +  G S  T Q+Y  D   F  FL  +        ++   S  ++  + + 
Sbjct: 9   LDAFEEDLRVASGRSPHTTQAYLLDLFAFARFLGEHG------LSLLDFSPEDVTHYFAH 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R    +  RS  R LS I+S+ ++LK+R +        +   +   +LP  L+E++ L L
Sbjct: 63  RED--LAMRSRSRVLSAIRSWSRFLKRRGLPAIDP-DTLPVPRLPRNLPGVLDEEEILRL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++               R+ AIL   Y  GLR+SE   LT   +  ++  +R+ GKG K 
Sbjct: 120 LE-----APDPKTDEGIRDRAILATFYASGLRVSELAELTLDRLNLNEEQIRVTGKGQKE 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+  L       +  Y +      N   +  LF   R            I+   R  G+ 
Sbjct: 175 RVAFLDGLSCARLKLYLERVRPSTNTAEKT-LFLTRRQTGFTRQGLWLLIKGYARQCGID 233

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            S + HTLRHSFATHLLS+G D+RSIQ +LGH  + TT+IYT+V+ +   + +     + 
Sbjct: 234 RSVSPHTLRHSFATHLLSHGMDIRSIQILLGHSDIQTTEIYTHVDIRMLAEDLA----KY 289

Query: 318 HPSITQKDKK 327
           HP   + +K 
Sbjct: 290 HPRGKRPEKD 299


>gi|88607956|ref|YP_506332.1| phage integrase family site specific recombinase [Neorickettsia
           sennetsu str. Miyayama]
 gi|88600125|gb|ABD45593.1| site-specific recombinase, phage integrase family [Neorickettsia
           sennetsu str. Miyayama]
          Length = 307

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 113/308 (36%), Positives = 165/308 (53%), Gaps = 11/308 (3%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +   +      W + L   +  S  TL +Y  D   FL FL+ +  E +   ++  +   
Sbjct: 5   IDPSVFTILDEWTRWLGGVKCFSSNTLVAYSRDLMAFLDFLSTFRGEPVRFTSLDCIDSK 64

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++RA+++ RR   I  R+  R+LS +KSF KYL K K     ++L +    K N+LPR+L
Sbjct: 65  DLRAWLASRRKNSISFRTNARALSSVKSFFKYLAKHKGIINEDVLGVVLRFKPNTLPRSL 124

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
             K+ + L++     +  +T WI  RN A+ YLLYG GLRISEALSLT  +     S ++
Sbjct: 125 TFKEIIELIEKF---SFLKTSWIVKRNIALCYLLYGSGLRISEALSLTVAD--LTNSEIK 179

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           I GKG + R++ LLP VR A+ +Y   CPF  +      LF    G  L      R    
Sbjct: 180 IIGKGGRERMIRLLPIVRVALSDYIASCPFQPDAGGF--LFLDRNGNKLCRTAVARAFLS 237

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           +RR   LP   T H LRHSFATHLL  G  +R IQ +LGH  L++T++YT +N+++    
Sbjct: 238 IRRGFNLPDHITPHALRHSFATHLLQEGVGVRKIQELLGHASLASTEVYTKLNAES---- 293

Query: 310 MMEIYDQT 317
           +ME Y Q 
Sbjct: 294 LMEKYKQF 301


>gi|217978007|ref|YP_002362154.1| integrase family protein [Methylocella silvestris BL2]
 gi|217503383|gb|ACK50792.1| integrase family protein [Methylocella silvestris BL2]
          Length = 314

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 132/308 (42%), Gaps = 18/308 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  +  ERG +K TL++Y  D   +   L    +  I      + +  +I A+I+   
Sbjct: 13  AFLDMVAAERGGAKNTLEAYARDLADYAGRLKAAKKSPI------EATGDDIGAYIASLE 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +   S  R LS I+   ++L      ++     +   ++   LP+ L+  +   L+ 
Sbjct: 67  KRGLKPASSARKLSAIRQLHRFLVAESYRSDDPAAIIEGPRRGRGLPKTLSIAEVDRLLA 126

Query: 140 NVLLHTSHETKWIDARNSAI-----LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
                     +    +  A+     + LLY  GLR+SE +SL           + I+GKG
Sbjct: 127 VSKEGLDAAARSPGEQLRALRTACLIELLYATGLRVSELVSLPKSIARGKDPLIPIRGKG 186

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGK-PLNPGVFQRYIRQLRR 252
            + R+ P+    R+AI  Y  L           P LF        L    F R ++    
Sbjct: 187 GRDRLAPISTKAREAIAAYRALLDRLAPGAASGPWLFPADSESGHLTRQAFARDLKTAAA 246

Query: 253 YLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             GL     + H LRH+FA+HLL NG DLR +Q +LGH  +STTQIYT+V  +     M 
Sbjct: 247 AAGLSAARVSPHVLRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHVLDER----MK 302

Query: 312 EIYDQTHP 319
            +    HP
Sbjct: 303 AMVRDLHP 310


>gi|261337550|ref|ZP_05965434.1| tyrosine recombinase [Bifidobacterium gallicum DSM 20093]
 gi|270277960|gb|EFA23814.1| tyrosine recombinase [Bifidobacterium gallicum DSM 20093]
          Length = 329

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 83/326 (25%), Positives = 146/326 (44%), Gaps = 33/326 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + + L    GLS+ T+++Y  D  +    L       + I    Q++   +R ++++
Sbjct: 15  VEEYARYLRANMGLSENTVRAYAKDAVRCCTAL-----HAMGISGFEQVTTDALRDWMAQ 69

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q     SL R    ++ F  ++ +   T       +   K ++ LP  LNE+QA TL
Sbjct: 70  -EAQITSRTSLARRTVAVRRFFGWMAEHGKTATDPAAALHIPKAAHYLPDVLNEQQAQTL 128

Query: 138 VDNVLLHT---------------------SHETKWIDARNSAILYLLYGCGLRISEALSL 176
           ++ V                         + +   +  R+ A++ LLY  G+R++E   L
Sbjct: 129 MEQVDDEAGARGAVAQPQADGEQHDGKAQTPQQHALAQRDCAMVELLYATGIRVAELTGL 188

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRG 235
              ++  D  T+R+ GKG+K R+VP     ++A+  +          ++    LF G RG
Sbjct: 189 NMADVHADNRTIRVTGKGNKQRVVPYGIPAQRALDAWMEHGRAVLAAVSSGDALFLGSRG 248

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             ++  + +  + +  +  G+P   + H LRHS ATHLL  G DLR +Q +LGH  L TT
Sbjct: 249 GRIDQRIVREVVHREAQRAGVP-DISPHALRHSAATHLLDGGADLREVQEMLGHSSLRTT 307

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHPSI 321
           Q YT+V+ +     +   Y Q  P  
Sbjct: 308 QRYTHVSIEQ----LKARYAQAFPRA 329


>gi|325267781|ref|ZP_08134431.1| site-specific tyrosine recombinase XerC [Kingella denitrificans
           ATCC 33394]
 gi|324980662|gb|EGC16324.1| site-specific tyrosine recombinase XerC [Kingella denitrificans
           ATCC 33394]
          Length = 357

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 86/325 (26%), Positives = 144/325 (44%), Gaps = 21/325 (6%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M     P  +S        ++L+  + +   S  TL +Y+ D  Q    L    E     
Sbjct: 47  MPIQKQPASMSSPFFAHLPDYLRE-QTQLNRSAHTLAAYQRDLWQLQTLLPEACENP--- 102

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
                 +  +  A +     + +   +L R L+  + + K++++++    S    ++  +
Sbjct: 103 ------TAQDFSAALKTLSQRGLNASTLARKLTVWRQYAKFVQQKEAADASPAERLKAPR 156

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           ++  LPRA+  +    L+D            +  R+ A+  L YG GLR+SE  +L   +
Sbjct: 157 QAQRLPRAIERETLQYLLD----QAPEAGDALAVRDHAVAELFYGSGLRLSELCALNLHD 212

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I  D+  + + GKG K R VPL      A+  +          + +  LF G  GK L  
Sbjct: 213 IWLDEGWVSVHGKGGKQRHVPLTQHSIAALRAWLARRT---TADSESALFTGRYGKRLTT 269

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               + ++      G   + T H LRHSFA HLL    DLR++Q +LGH  LS+TQIYT 
Sbjct: 270 RQIAKRLQHWAAERGSLQTITPHMLRHSFAGHLLQASHDLRAVQDLLGHSSLSSTQIYTK 329

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKD 325
           ++     D + ++YDQTHP   +K 
Sbjct: 330 LD----ADHLAQVYDQTHPRARRKP 350


>gi|319406365|emb|CBI80006.1| integrase/recombinase XerD [Bartonella sp. AR 15-3]
          Length = 312

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 80/314 (25%), Positives = 145/314 (46%), Gaps = 20/314 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS--YTEIRAFI 75
              +L+ +  ERG S  TL +Y+ D +        + + K++ ++I   S    ++   +
Sbjct: 7   IDRFLEMMSAERGASVRTLLAYQHDLQ--------WAQNKLSSRSISFFSAQREDLINLL 58

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           S  +       S  R LS ++ F ++L    +  +    ++ + ++   LP+ ++E    
Sbjct: 59  SLMQIAGCAATSQARRLSTLRQFFQFLYAEGLREDDPSNDIDSPRQGRPLPKIISEDAVT 118

Query: 136 TLVDNVLLHTSHETKWIDARNSAI-----LYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            L+D   L T            A+     L +LY  GLRISE +SL  Q +   ++ + +
Sbjct: 119 KLLDFAQLETDQAEYGSQNYYRALRLWVFLEMLYATGLRISELVSLPVQAVRRKEAFILV 178

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +GKG K R+V +    R+ + ++  L     +               +      R ++ L
Sbjct: 179 RGKGGKERVVLVSEKARQVLSQWLILRDQGKDATSFYLFPARSSTGYIARQFVARGLKDL 238

Query: 251 RRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            +  G+   + + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V        
Sbjct: 239 AKRAGIQSENFSPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQIYTHVLEAR---- 294

Query: 310 MMEIYDQTHPSITQ 323
           +  + ++ HP I Q
Sbjct: 295 LHRLVNEHHPLIDQ 308


>gi|296454352|ref|YP_003661495.1| phage integrase family protein [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183783|gb|ADH00665.1| phage integrase family protein [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 353

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 84/364 (23%), Positives = 149/364 (40%), Gaps = 62/364 (17%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + S +   +  +++  L+  RGLS  TL++Y  D    L        E   +  + +++ 
Sbjct: 1   MSSTQFDGDIDSFVSYLKSNRGLSANTLKAYRADLTACLHLF-----ELRGVTDLNEITL 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++R++++   ++     S+ R    ++ F  +  +  +TT      +      ++LP  
Sbjct: 56  DDLRSWMA-VESRDHARSSMARKTVAVRGFFAWAYEHGVTTTDPAATLMTPSIPSTLPAV 114

Query: 129 LNEKQALTLVD-------------------------------------------NVLLHT 145
           L E QA  L+D                                                 
Sbjct: 115 LTESQAEQLLDVAEHAVATNQYKDDGGAAAASGSGSGKAADKSADIVNRSEAPARADKRD 174

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           +        RN+AIL LLY  G+R++E +S+   +I     T+++ GKG+K R+VP    
Sbjct: 175 NARATAESQRNAAILELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLP 234

Query: 206 VRKAILEYYDLCPFDL--------NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
            ++A+  + +     L               LF G RG  ++  + +  + +  R  G+P
Sbjct: 235 AQRALETWLEQGRPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVP 294

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRHS ATH+L  G DLR +Q +LGH  L TTQ YT+V+ +     +   Y Q 
Sbjct: 295 -DISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQ----LKNRYGQA 349

Query: 318 HPSI 321
            P  
Sbjct: 350 FPRA 353


>gi|239621228|ref|ZP_04664259.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum
           subsp. infantis CCUG 52486]
 gi|239515689|gb|EEQ55556.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum
           subsp. infantis CCUG 52486]
          Length = 357

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 83/368 (22%), Positives = 148/368 (40%), Gaps = 66/368 (17%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + S +   +  +++  L+  RGLS  TL++Y  D    L        E   +  + +++ 
Sbjct: 1   MSSTQFDGDIDSFVSYLKSNRGLSANTLKAYRADLTACLHLF-----ELRGVTDLNEITL 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++R++++   ++     S+ R    ++ F  +  +  +T       +      ++LP  
Sbjct: 56  DDLRSWMA-VESRDHARSSMARKTVAVRGFFAWAYEHGVTNTDPAATLMTPSIPSTLPAV 114

Query: 129 LNEKQALTLVDN---------------------------------------VLLHTSHET 149
           L E QA  L+D                                                 
Sbjct: 115 LTESQAEQLLDVAEQAVATNQYKGDGGAAAASGSGSGKAVGKTADKSADTVNRNEAPARA 174

Query: 150 KWID--------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
              D         RN+AIL LLY  G+R++E +S+   ++     T+++ GKG+K R+VP
Sbjct: 175 DKRDSARVVAESQRNAAILELLYATGIRVAELVSMDIVDVDFSNRTIKVTGKGNKQRVVP 234

Query: 202 LLPSVRKAILEYYDLCPFDL--------NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
                ++A+  + +     L               LF G RG  ++  + +  + +  R 
Sbjct: 235 FGLPAQRALETWLEQGRPVLARTATDAAKSRAANALFLGARGGRIDQRIARDIVHRAARE 294

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+P   + H LRHS ATH+L  G DLR +Q +LGH  L TTQ YT+V+ +     +   
Sbjct: 295 AGVP-DISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQ----LKNR 349

Query: 314 YDQTHPSI 321
           Y Q  P  
Sbjct: 350 YGQAFPRA 357


>gi|281422267|ref|ZP_06253266.1| integrase/recombinase XerD [Prevotella copri DSM 18205]
 gi|281403772|gb|EFB34452.1| integrase/recombinase XerD [Prevotella copri DSM 18205]
          Length = 294

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 78/308 (25%), Positives = 142/308 (46%), Gaps = 15/308 (4%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +     +L+ L  E   S+ T+++Y  D + F  +    +E      T   +    IR +
Sbjct: 1   MLSIDKFLEYLRSELNRSQRTVENYREDLKLFEQYARNLSESF----TWESVDSDMIRNW 56

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +           S+ R LS +K F ++   R         +++  K+S  LP+ L E + 
Sbjct: 57  MEHMIDAGNKATSVNRRLSALKMFYRFALVRHYVESDPAHSLKGPKESKPLPQFLKENEM 116

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D  +        + + R   I+ L Y  G+R+SE + L   ++   +  ++I GKG
Sbjct: 117 DELLDRKM----WGDDYDNVRARTIIILFYETGMRLSELIGLDVDDVNFIKKEIKITGKG 172

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR-QLRRY 253
           +K RIVP    ++ A+ EY  L    + +     L    +G  ++P   +  ++  L R 
Sbjct: 173 NKQRIVPFGDELKNALSEYLTLRAQRVMVK-SGALLLADKGGRMSPVQVREIVKENLARV 231

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L    + H LRH+FAT +L++G  + S++ +LGH +LSTT+IYT+   +     +  +
Sbjct: 232 CSLKKK-SPHVLRHTFATAMLNHGAGIESLKRLLGHAKLSTTEIYTHTTFEQ----LKRV 286

Query: 314 YDQTHPSI 321
           Y + HP  
Sbjct: 287 YIEAHPRA 294


>gi|332977413|gb|EGK14190.1| site-specific tyrosine recombinase XerC [Psychrobacter sp.
           1501(2011)]
          Length = 341

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 87/331 (26%), Positives = 150/331 (45%), Gaps = 22/331 (6%)

Query: 4   NNLPEIVSFEL---LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           N  P  +S EL   L   + WL  L + R +S  T+++Y     Q   FL      +   
Sbjct: 23  NKQPLELSSELQALLLPVEQWLAELSV-RQMSSHTIEAYYAGLFQLASFL------EAGK 75

Query: 61  QTIRQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
            +  +    ++  +I++R     +   S+++ LS I+ F  +L  +     +     +  
Sbjct: 76  LSWTRCDKRQLAKYIAQRLDVDALAISSVQQELSAIRHFYSWLIDQGQARINPTTGYQLK 135

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           +    LP   +      L++  +  T  + + +  R+ A+  LLY  GLR+ E + L   
Sbjct: 136 RAPRPLPSIADGDLLTQLLEQPMPDTPEQAR-LWIRDKAMFELLYSSGLRVGELVGLNVS 194

Query: 180 NIMDD----QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR- 234
           ++  D    +  +R+ GKG+K R+VP+     KAI  Y     +         LF   + 
Sbjct: 195 DLRIDARGERGEVRVTGKGNKTRLVPVGRQALKAINTYLPHR-YLWEEQGDTALFISEKL 253

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G  L     Q+ ++      G+  +   H LRH FA+H+LS  GDLR++Q +LGH  +ST
Sbjct: 254 GTRLTTRAVQQRLKVAANRAGIAQNMYPHLLRHCFASHMLSGSGDLRAVQEMLGHSDIST 313

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           TQIYT+V+       + ++YD+ HP  T   
Sbjct: 314 TQIYTHVDFA----KLTQVYDKAHPRATHNK 340


>gi|241663999|ref|YP_002982359.1| site-specific tyrosine recombinase XerD [Ralstonia pickettii 12D]
 gi|240866026|gb|ACS63687.1| tyrosine recombinase XerD [Ralstonia pickettii 12D]
          Length = 298

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 79/307 (25%), Positives = 138/307 (44%), Gaps = 18/307 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
              Q +   L +E GL++ TL +Y  D   +  +LA         ++I +    ++  + 
Sbjct: 7   DAIQRFCDALWLEDGLARNTLDAYRRDLTLYAHWLAARG------KSIAETEDGDLADYF 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           + R  +     S  R  +  K F ++  +  + +      +   K+    P+ L+E Q  
Sbjct: 61  AARHAESRA-SSANRRRTVFKRFFQWALREHVVSTDPSRLLPTAKQPPRFPKTLSETQVE 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL-TPQNIMDDQSTLRIQGKG 194
            L+     +       +  R+ A++ L+Y  GLR+SE ++L T +  +++     + GKG
Sbjct: 120 ALI-----NAPDVDTPLGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEGVVRVVGGKG 174

Query: 195 DKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            K R+VP        +  Y        L       LF   RG+ +    F   I++    
Sbjct: 175 GKDRLVPFGAEAGDWLRRYLRDGRTALLGERTADALFVTARGEGMTRQAFWYLIKRYALL 234

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQIYT+V  +     +  +
Sbjct: 235 ADIHAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARER----LRTL 290

Query: 314 YDQTHPS 320
           + Q HP 
Sbjct: 291 HAQHHPR 297


>gi|118444203|ref|YP_878098.1| tyrosine recombinase XerD [Clostridium novyi NT]
 gi|118134659|gb|ABK61703.1| tyrosine recombinase XerD [Clostridium novyi NT]
          Length = 292

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 80/308 (25%), Positives = 158/308 (51%), Gaps = 16/308 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +  + +++++  ++ LSK T+++Y  D  +F  FL    E       I       I A
Sbjct: 1   MEEYLKQYIEDMR-KKELSKNTIEAYNRDIIKFCKFLKEREE------DILDADMVSIMA 53

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++   + +K  D S+ RS+  I++F KYL +     ++ ++N    K   ++P  L   +
Sbjct: 54  YVQTLKKEKKADSSIIRSIVSIRNFYKYLIRMGKDVDNPLINYEVPKNKRTIPEILTVDE 113

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
               +     +    +++   R+ A+L L+Y  G+++SE L +T  +I      ++ +G 
Sbjct: 114 VEKFL-----NAPDCSEYKGIRDKAMLELMYATGMKVSELLRVTIFDINLKLCYVKCKGV 168

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            DK RI+P+       + EY ++       N +  LF  +RG  +    F + +++  + 
Sbjct: 169 KDKERIIPIGSYAVNCLNEYLNVRDKMSAANSET-LFCNLRGGKMTRQGFWKIVKKYAKD 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+     ++TLRHSFA HLL NG D++S+Q +LGH  ++TTQIY++++ +N    ++++
Sbjct: 228 AGINKKIDSYTLRHSFAVHLLQNGADIKSVQELLGHNTIATTQIYSSISKQN---KIVDV 284

Query: 314 YDQTHPSI 321
           Y + HP  
Sbjct: 285 YKKAHPRA 292


>gi|49476286|ref|YP_034327.1| integrase /recombinase xerD [Bartonella henselae str. Houston-1]
 gi|49239094|emb|CAF28397.1| Integrase /recombinase xerD [Bartonella henselae str. Houston-1]
          Length = 312

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 81/317 (25%), Positives = 144/317 (45%), Gaps = 18/317 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             ++L+ +  ERG  + TL +Y+ D +     L  ++    + Q        ++   +S 
Sbjct: 7   IDHFLEMMSAERGACEHTLAAYQRDLQWAQDELFSHSVSLFSAQ------REDLIGLLSL 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             T      S  R LS ++ F ++L    +  +    N+   ++   LP+ ++E     L
Sbjct: 61  MHTLGFAASSQARRLSTLRQFYQFLYAEGLRADDPSHNIDAPRQGRPLPKVVSENVVTKL 120

Query: 138 VDNVLLHTSHETKWIDARNSAI-----LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +D   L  + E         A+     + +LY  GLRISE +SL  Q +     ++ ++G
Sbjct: 121 LDLAQLEVNQEDYGSKGHFRALRLQLLIEMLYATGLRISELVSLPVQAVRGKDYSILVRG 180

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLR 251
           KG K R+V L     + + ++  L          L LF        +   V  R ++ L 
Sbjct: 181 KGKKERMVLLSKKACQVLSQWLSLRD-QGKYAESLYLFPARSETGYIARQVVARDLKSLA 239

Query: 252 RYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           R  G+     + H LRH+FA+HLL NG DLR++Q +LGH  ++TTQIYT+V  +     +
Sbjct: 240 RRAGIKSGGFSPHVLRHAFASHLLQNGADLRAVQHLLGHSDIATTQIYTHVLEE----GL 295

Query: 311 MEIYDQTHPSITQKDKK 327
             + ++ HP   ++  +
Sbjct: 296 YRLVNEHHPLADEQKAR 312


>gi|187929889|ref|YP_001900376.1| site-specific tyrosine recombinase XerD [Ralstonia pickettii 12J]
 gi|187726779|gb|ACD27944.1| tyrosine recombinase XerD [Ralstonia pickettii 12J]
          Length = 314

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 82/324 (25%), Positives = 142/324 (43%), Gaps = 25/324 (7%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           E  +LP     +     Q +   L +E GL++ TL +Y  D   +  +LA         +
Sbjct: 10  EAPSLP----PQSADAIQRFCDALWLEDGLARNTLDAYRRDLTLYAHWLAERN------K 59

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           +I +    ++  + + R  +     S  R  +  K F ++  +  +        +   K+
Sbjct: 60  SIAETEDGDLADYFAARHAESRA-SSANRRRTVFKRFFQWALREHVVNTDPSRLLPTAKQ 118

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL-TPQN 180
               P+ L+E Q   L+     +       +  R+ A++ L+Y  GLR+SE ++L T + 
Sbjct: 119 PPRFPKTLSETQVEALI-----NAPDVDTPLGLRDRAMIELMYASGLRVSEIVALKTVEV 173

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP----FDLNLNIQLPLFRGIRGK 236
            +++     + GKG K R+VP        +  Y           L       LF   RG+
Sbjct: 174 GLNEGVVRVVGGKGGKDRLVPFGAEAGDWLRRYLQDRQTGRTALLGERTADALFVTARGE 233

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            +    F   I++      +    + HTLRH+FATHLL++G DLR +Q +LGH  +STTQ
Sbjct: 234 GMTRQAFWYLIKRYALLADIHAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQ 293

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPS 320
           IYT+V  +     +  ++ Q HP 
Sbjct: 294 IYTHVARER----LRTLHAQHHPR 313


>gi|284032633|ref|YP_003382564.1| integrase family protein [Kribbella flavida DSM 17836]
 gi|283811926|gb|ADB33765.1| integrase family protein [Kribbella flavida DSM 17836]
          Length = 312

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 77/312 (24%), Positives = 144/312 (46%), Gaps = 11/312 (3%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           V  +      ++ ++L  ERGLS+ ++++Y  D    +  +     + ++   IR L   
Sbjct: 12  VPEDFAALLADYERHLTAERGLSEHSVRAYMGDVADLIDHVTRLGHDDLSALDIRGL--- 68

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
             R++++K+++      ++ R  +  + F  + ++           + + K   +LP  L
Sbjct: 69  --RSWLAKQQSLGKARSTMARRATAARVFTAWAQRTGRIATDPGALLASPKAHKTLPGVL 126

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            +     ++D   +     +  +  R+  I+ LLY  G+R+ E  +L    +   +  +R
Sbjct: 127 GQADTRAVLDAAAVAADDGS-PVGLRDLTIMELLYATGIRVGELCALDVDEVDRSRRVVR 185

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG K R VP      +A+  +  + P  +       LF G RG  ++    +R +  
Sbjct: 186 VFGKGRKERSVPYGVPAAEALETWLAVRPRLVRDGSGPALFLGARGGRIDQRTVRRVVH- 244

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            R         + H LRH+ ATHLL  G DLRS+Q +LGH  L+TTQ+YT+V+S+     
Sbjct: 245 ARIGAVEAPDLSPHGLRHTAATHLLEGGADLRSVQELLGHASLATTQVYTHVSSER---- 300

Query: 310 MMEIYDQTHPSI 321
           +   Y+Q HP  
Sbjct: 301 LRSAYEQAHPRA 312


>gi|145593868|ref|YP_001158165.1| phage integrase family protein [Salinispora tropica CNB-440]
 gi|145303205|gb|ABP53787.1| phage integrase family protein [Salinispora tropica CNB-440]
          Length = 325

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 82/329 (24%), Positives = 141/329 (42%), Gaps = 20/329 (6%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
              L   +   L +   ++  +L   +  S  T+++Y  D    L         +   +T
Sbjct: 7   TRALHAALPAPLCEAADDFANHLAQVQNRSTHTVRAYVADVISLLDHAV-----RAGART 61

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
              L+  +IR++++++RT      +L R  +  ++F  +  +           + + +  
Sbjct: 62  PADLTLAQIRSWLARQRTTGAARSTLARRSAAARTFSAWAHRDGRLPVDVAAGLASPRAH 121

Query: 123 NSLPRALNEKQALTLVDNVLLHT---------SHETKWIDARNSAILYLLYGCGLRISEA 173
             LP  L   QA  L++                     +  R+  +L LLY  G+R+SEA
Sbjct: 122 RELPAVLPVDQAAALLETAHAAPRGQPTDDVPPGAADPVRLRDQLLLELLYATGVRVSEA 181

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRG 232
             L   ++   +  LR+ GKG + R VP     ++ +  +     P  +       L  G
Sbjct: 182 CGLNVADVDPGRRVLRVFGKGGRERSVPYGVPAQRTLDAWLRHGRPRLVGAQSANALLLG 241

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
            RG  LNP   +  + +     GLP  T+ H LRH+ ATHLL  G DLR++Q +LGH  L
Sbjct: 242 ARGGRLNPTTARGIVGRYTTAAGLPR-TSPHGLRHTAATHLLEGGADLRTVQELLGHSSL 300

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           ++TQIYT+V+ +     +   Y Q HP  
Sbjct: 301 ASTQIYTHVSVER----LRSAYRQAHPRA 325


>gi|222149986|ref|YP_002550943.1| site-specific tyrosine recombinase XerD [Agrobacterium vitis S4]
 gi|221736968|gb|ACM37931.1| tyrosine recombinase XerD [Agrobacterium vitis S4]
          Length = 332

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 90/331 (27%), Positives = 141/331 (42%), Gaps = 33/331 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+ +  ERG +  TL SYE D      FLA          ++   +  ++ A+++ 
Sbjct: 9   IEAFLEMMSAERGAAGNTLSSYERDLEDLHGFLATRK------VSVMAATSDDLSAYLAD 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S  R LS ++ F K+L    +  +     +   KK   LP+ L+      L
Sbjct: 63  LGHRGFEASSQARRLSALRQFYKFLYAEGLRGDDPTSILDTPKKGRPLPKTLSIADVDKL 122

Query: 138 VDNVLLHTSHE--TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +       + +   +    R  A+L LLY  G+R+SE +SL    +  +   L I+GKG+
Sbjct: 123 LSLAQAEAALDGPDRLQRLRRLALLELLYATGMRVSELVSLPANVLAQEGRFLVIRGKGN 182

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-------------------PLFRG-IRG 235
           K R+VPL  S   A+  Y      +                           LF    R 
Sbjct: 183 KERLVPLSRSAIAAMQVYAQAKEIEQAEKPPSKKTASKQTESKLGKSSGIGFLFPAASRE 242

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
             L   VF R ++ L    GL     + H LRH+FA+HLL NG DLR +Q +LGH  +ST
Sbjct: 243 GYLPRQVFARELKDLAIRAGLSGDAVSPHVLRHAFASHLLENGADLRVVQELLGHSDIST 302

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           TQIYT+V  +     +  + +  HP    + 
Sbjct: 303 TQIYTHVLEER----LQILVETHHPLAKHRK 329


>gi|188590854|ref|YP_001795454.1| site-specific tyrosine recombinase xerc [Cupriavidus taiwanensis
           LMG 19424]
 gi|170937748|emb|CAP62732.1| site-specific tyrosine recombinase [Cupriavidus taiwanensis LMG
           19424]
          Length = 349

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 83/318 (26%), Positives = 142/318 (44%), Gaps = 29/318 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L   R L++ TL  Y  + R      A +         +  L    IR F ++  
Sbjct: 21  RYLDWLRGSRKLAEHTLSGYARELRVLQAHAAQHAPG----VALLALQTHHIRNFAARLH 76

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNILNMRNLKKSNSLPRALNEKQALTLV 138
              +   S+ R+LS  + F  +  +     + + +  +R  +  ++LP+AL+ + A+ LV
Sbjct: 77  AAGLVGTSIGRALSAWRGFYLWAARHGHGVSVNPVDGVRAPRSGHALPKALSVEHAVALV 136

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-----------MDDQST 187
            +        T     R+ A+  L Y  GLR+SE + L  +                 + 
Sbjct: 137 AH-----PAGTDAEALRDQAVYELFYSSGLRLSELVQLDLRYAEADGYRSSGWLDLAGAE 191

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN----IQLPLFRGIRGKPLNPGVF 243
           + + GKG + R VP+      A+  +  +    L           LF G RG+ L+    
Sbjct: 192 VTVTGKGSRRRTVPVGGRAIAALQAWLAVRDGLLRPGAAPEDAHALFLGPRGRRLSMRTV 251

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           Q  ++Q     G+P     H LRHSFATH+L + GDLR++Q +LGH  +STTQ+YT ++ 
Sbjct: 252 QLRLKQQALRAGVPADVHPHMLRHSFATHMLQSSGDLRAVQEMLGHASISTTQVYTALDF 311

Query: 304 KNGGDWMMEIYDQTHPSI 321
           ++    + ++YD+ HP  
Sbjct: 312 QH----LAKVYDKAHPRA 325


>gi|327404137|ref|YP_004344975.1| Tyrosine recombinase xerC [Fluviicola taffensis DSM 16823]
 gi|327319645|gb|AEA44137.1| Tyrosine recombinase xerC [Fluviicola taffensis DSM 16823]
          Length = 293

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 84/310 (27%), Positives = 150/310 (48%), Gaps = 17/310 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +  + +++  LE+E+  SK T+ +YE D  QF+ F              R+++Y  +RA+
Sbjct: 1   MSYKDSFIHYLEVEKRYSKHTILAYEEDLNQFVSFSELKES-----VEWREVNYQLVRAW 55

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +         +R++ R +S ++SF K+L       E+ +L +R  K    LP+ + + + 
Sbjct: 56  VVGLLESGQSNRTVSRKISCLRSFFKWLINEGKIGENPMLRIRGPKVEKRLPQFVKQTE- 114

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
              +D   +     + +   R+  +  L Y  G+R+SE + L   N      ++++ GK 
Sbjct: 115 ---IDGARIEGLFSSNFEGVRDRLMFELFYQTGIRLSELIELK--NKDVSSVSIKVLGKR 169

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +K RI+P+   + + IL Y  + P     + Q+ LF    G+ L+P    R I      +
Sbjct: 170 NKERIIPIGQELHEIILAYQSIKPG--GPDSQILLFVKKDGRKLSPKFVYRKINTYLGSV 227

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
                 + H LRH+FATH+L+NG  L +++ +LGH  LS TQ+YT+    N    +  IY
Sbjct: 228 TNVQKKSPHILRHTFATHMLNNGAGLETLKELLGHANLSATQVYTH----NSFAQINSIY 283

Query: 315 DQTHPSITQK 324
              HP   +K
Sbjct: 284 SHAHPRGRKK 293


>gi|213622284|ref|ZP_03375067.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 234

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 73/244 (29%), Positives = 119/244 (48%), Gaps = 12/244 (4%)

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +G  SL   LS ++SF  +L  +     +    +   K    LP+ ++      L+D
Sbjct: 1   RKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLD 60

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             L         +  R+ A+L ++YG GLR+SE + L  +++  D   + + GKG K R 
Sbjct: 61  IDL------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERR 114

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +P+  +    I  + DL    L  + +  LF    GK ++    Q+   +     GL   
Sbjct: 115 LPIGRNAVTWIEHWLDLRG--LFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSH 172

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++    +  +YD  HP
Sbjct: 173 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 228

Query: 320 SITQ 323
              +
Sbjct: 229 RAKR 232


>gi|313901872|ref|ZP_07835292.1| tyrosine recombinase XerD subunit [Thermaerobacter subterraneus DSM
           13965]
 gi|313467865|gb|EFR63359.1| tyrosine recombinase XerD subunit [Thermaerobacter subterraneus DSM
           13965]
          Length = 321

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 92/303 (30%), Positives = 143/303 (47%), Gaps = 16/303 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L+ L +ERGL+  TL +Y  D   F  F A    E         ++   I A++ +  
Sbjct: 19  DYLEILRVERGLAAHTLAAYRRDLADFAAFAAARQVEPAG------VTRPLILAYLHQLE 72

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  +  R L+ ++ F +YL             M   +    LPR L   +   +++
Sbjct: 73  RAGRSRATAARRLAALRGFFRYLASEGKVEHDPAEGMATPRGGRPLPRVLAVDEVERVLE 132

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                          R+ A+L LLY  GLR+SE + L   +++ D   LR +GKG K R+
Sbjct: 133 -----LPQPASPAGLRDRAVLELLYATGLRVSELVGLDLDDLLLDHGLLRCRGKGGKERV 187

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+     +A  +Y       L     Q  LF   RG  L+       +R+  R  G+P 
Sbjct: 188 VPVAAPAVEATRQYLARGRPALARRPGQRALFLNQRGGRLSRQWVWHLLRRAARRAGVPR 247

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + + HTLRHSFATHLL+ G DLR++Q +LGH  +STTQIYT++   +    ++E Y + H
Sbjct: 248 AVSPHTLRHSFATHLLAGGADLRAVQELLGHADISTTQIYTHLTRHH----LLEAYLRAH 303

Query: 319 PSI 321
           P +
Sbjct: 304 PRM 306


>gi|310815561|ref|YP_003963525.1| phage integrase family protein [Ketogulonicigenium vulgare Y25]
 gi|308754296|gb|ADO42225.1| phage integrase family protein [Ketogulonicigenium vulgare Y25]
          Length = 313

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 86/323 (26%), Positives = 150/323 (46%), Gaps = 25/323 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +    +L+    E G ++ TL +Y  D + F  +LA    + +T      L   +I  
Sbjct: 1   MERWISTFLEAQAAELGAARNTLLAYGRDLQDFAAWLARRKLDFLT------LDQADIED 54

Query: 74  FISKRRTQKIGDRSLKRS------LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
           +++    Q +   +  R       LS ++   ++       T++  + ++   K+ +LP 
Sbjct: 55  YLTFCADQGLSPSTRARRPTRARRLSAVRQLFRFAFDEGWRTDNPSIRLKGATKARTLPE 114

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            LNE +   L+D     ++   +    RN+ +L LLY  G+R+SE ++L       D   
Sbjct: 115 TLNEDEVDRLLDAARAASAARPREA-LRNTCLLELLYATGMRVSELVTLPVAAARGDPRM 173

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL------NIQLPLFRGIRGK-PLNP 240
           L ++GKG K R+VPL P  R A++E+      +              LF        L  
Sbjct: 174 LLVRGKGGKERLVPLSPPARTAMVEWLAQRDTEQEALRKAGGQPSRFLFPSHGADGHLTR 233

Query: 241 GVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
             F   ++ L    G+ P   + H LRH+FATHLL+NG DLR+IQ++LGH  ++TT+IYT
Sbjct: 234 QHFLVILKDLAVLAGISPARVSPHKLRHAFATHLLANGADLRAIQTMLGHADIATTEIYT 293

Query: 300 NVNSKNGGDWMMEIYDQTHPSIT 322
           +V  ++    + ++    HP   
Sbjct: 294 HVLDQH----LKDLVLTHHPLAK 312


>gi|282858397|ref|ZP_06267577.1| phage integrase, N-terminal SAM domain protein [Prevotella bivia
           JCVIHMP010]
 gi|282588845|gb|EFB93970.1| phage integrase, N-terminal SAM domain protein [Prevotella bivia
           JCVIHMP010]
          Length = 290

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 70/304 (23%), Positives = 135/304 (44%), Gaps = 15/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+G S  T+ +Y  D + F  F   + E      +   +    +R ++  
Sbjct: 2   VDRFLDYLRLEKGYSLKTIDNYRDDLKGFERFYKNFDE----TLSWESIDSDIVRNWVEF 57

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
               K    S+ R LS ++S  +Y  K     +  +  ++  KK  SLP+ + E +   L
Sbjct: 58  MMDNKAAAASVNRRLSALRSLYRYSLKHGFVEKDPVYGIQGPKKPKSLPQFVKESELDQL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           + + +        + D     ++ +LY  G+R+ E + L   ++    S++++ GK +K 
Sbjct: 118 LQDEMWA----DTYQDLLARTLIVVLYETGMRLGEIVGLNLNSVDFHTSSVKVTGKRNKQ 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R++P    +  ++  Y         +  +   F   +G+ +N    +  +++    +   
Sbjct: 174 RVIPFGEELESSLKAYLGKR---KAIAGEEAFFTTEKGERVNDYQVRDLVKKNLSKVSTL 230

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T H LRHSFAT +L++   L S++ +LGH  LSTT+IYT+   +     +  IY   
Sbjct: 231 KKRTPHVLRHSFATAMLNHNAGLESVRKLLGHESLSTTEIYTHTTFEQ----LKRIYKNA 286

Query: 318 HPSI 321
           HP  
Sbjct: 287 HPRA 290


>gi|322691408|ref|YP_004220978.1| tyrosine recombinase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320456264|dbj|BAJ66886.1| tyrosine recombinase [Bifidobacterium longum subsp. longum JCM
           1217]
          Length = 357

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 148/368 (40%), Gaps = 66/368 (17%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + S +   +  +++  L+  RGLS  TL++Y  D    L        E   +  + +++ 
Sbjct: 1   MSSTQFDGDIDSFVSYLKSNRGLSANTLKAYRADLTACLHLF-----ELRGVTDLNEITL 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++R++++   ++     S+ R    ++ F  +  +  +T       +      ++LP  
Sbjct: 56  DDLRSWMA-VESRDHARSSMARKTVAVRGFFAWAYEHGVTNTDPAATLMTPSIPSTLPAV 114

Query: 129 LNEKQALTLVDN---------------------------------------VLLHTSHET 149
           L E QA  L+D                                                 
Sbjct: 115 LTESQAEQLLDVAEQAVATNQYKGDGGAAAASGSGSGKAVGKTADKSADTVNRNEAPARA 174

Query: 150 KWID--------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
              D         RN+AIL LLY  G+R++E +S+   +I     T+++ GKG+K R+VP
Sbjct: 175 DKRDSARVVAESQRNAAILELLYATGIRVAELVSMNIADIDFSTRTIKVTGKGNKQRVVP 234

Query: 202 LLPSVRKAILEYYDLCPFDL--------NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
                ++A+  + +     L               LF G RG  ++  + +  + +  R 
Sbjct: 235 FGLPAQRALETWLEQGRPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAARE 294

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+P   + H LRHS ATH+L  G DLR +Q +LGH  L TTQ YT+V+ +     +   
Sbjct: 295 AGVP-DISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQ----LKNR 349

Query: 314 YDQTHPSI 321
           Y Q  P  
Sbjct: 350 YGQAFPRA 357


>gi|163869346|ref|YP_001610602.1| integrase/recombinase XerD [Bartonella tribocorum CIP 105476]
 gi|161019049|emb|CAK02607.1| integrase/recombinase XerD [Bartonella tribocorum CIP 105476]
          Length = 312

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 79/316 (25%), Positives = 144/316 (45%), Gaps = 16/316 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+ +  ERG S  TL +Y+ D +     L+ ++    + Q        ++   +S 
Sbjct: 7   IERFLEMMSAERGASAHTLAAYQHDLQWAQDELSSHSVSLFSAQ------KEDLIGLLSL 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             T      S  R LS ++ F ++L    +  +    ++   ++   LP+ ++E   +  
Sbjct: 61  MHTFGFAATSQARRLSTLRQFYQFLYAEGLRADDPSHDIDAPRQGRPLPKIISEDVVIKF 120

Query: 138 VDNVLLHTSHETKWIDARNSAIL-----YLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +D   L  +           A+       +LY  GLRISE +SL  Q +   + +L ++G
Sbjct: 121 LDLAQLEVNQADYGSKDYLRALRLQLLSEMLYATGLRISELVSLPVQAVRGKEYSLLVRG 180

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R+V L     + +L++ DL     +               +   V  R ++ L +
Sbjct: 181 KGKKERMVLLSKKAYQVLLQWLDLRDQGKDAKSLYLFPAHSETGYIARQVVARELKNLAK 240

Query: 253 YLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             G+   + + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V  +     + 
Sbjct: 241 RAGITSESFSPHVLRHAFASHLLQNGADLRAVQHLLGHSDISTTQIYTHVLEE----GLY 296

Query: 312 EIYDQTHPSITQKDKK 327
            + ++ HP    +  +
Sbjct: 297 RLVNEHHPLADTQKAR 312


>gi|126726516|ref|ZP_01742357.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2150]
 gi|126704379|gb|EBA03471.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2150]
          Length = 312

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 81/318 (25%), Positives = 143/318 (44%), Gaps = 20/318 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ++      +L+    E   S+ TL +Y  D + F  ++A            +  S  +I 
Sbjct: 7   DMRLWISTFLEAQSAELDASENTLLAYARDLKDFQDWIARQK------LDFQTTSREDIE 60

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            ++     Q +   +  R LS +K   ++  +     ++  L ++   +   LP+ L+E 
Sbjct: 61  KYLINCDAQGLAKSTRARRLSAVKQLFRFAYEDGRRDDNPALQIKGPGRDKRLPKTLSED 120

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L+ +    +        ARN+ ++ LLY  G+R++E +SL       D   + + G
Sbjct: 121 EVDRLLAS--ASSLGRKDSDRARNTCMMQLLYATGMRVTELVSLPVSAARGDPRMILVMG 178

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCP------FDLNLNIQLPLFRGI-RGKPLNPGVFQR 245
           KG K R+VPL P  R+A   + ++                  LF    +   +    F  
Sbjct: 179 KGGKERLVPLSPPAREATATWLNIRDATQKLAEKKGAAPSRFLFPSSGKLGHITRHRFYL 238

Query: 246 YIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            I+++    G+ P   T HT+RH+FATHLL+ G DLRSIQ++LGH  +STT+IYT+V  +
Sbjct: 239 LIKEISVQAGVDPSKVTPHTMRHAFATHLLARGADLRSIQTLLGHADISTTEIYTHVLDE 298

Query: 305 NGGDWMMEIYDQTHPSIT 322
                + ++    HP   
Sbjct: 299 R----LKQLVLDHHPLAD 312


>gi|85713796|ref|ZP_01044786.1| tyrosine recombinase XerD [Nitrobacter sp. Nb-311A]
 gi|85699700|gb|EAQ37567.1| tyrosine recombinase XerD [Nitrobacter sp. Nb-311A]
          Length = 340

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 84/314 (26%), Positives = 135/314 (42%), Gaps = 22/314 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L  E+G  + TL +Y  D      FLA         ++        +R +++    
Sbjct: 36  FLDMLAAEQGAGENTLDAYRRDLEDLSAFLARAR------RSFVIADTQTLRDYLNDLDL 89

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     S+ R LS ++   ++L   ++ ++     +   K+  SLP+ L+      L+  
Sbjct: 90  RGFKSSSVARRLSAMRHLFRFLLSERVRSDDPAAILSGPKRGRSLPKILSIADVDRLLAR 149

Query: 141 VLLHTSHET-----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
                         +   AR   +L +LY  GLR+SE +SL       D   + ++GKG 
Sbjct: 150 AKADAESPDISPARRLRAARLYCLLEVLYATGLRVSELVSLPLSAARRDARMIVVRGKGG 209

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-----LPLFRGI-RGKPLNPGVFQRYIRQ 249
           K R+VPL  + R+A+  Y                    LF        L    F R +++
Sbjct: 210 KERLVPLNDASRQAMANYLVAIDDQRGAGKTAATRPKWLFPSFGDSGHLTRQHFARELKE 269

Query: 250 LRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           L    GL P   + H LRH+FA+HLL NG DLR +Q++LGH  +STTQIYT+V  +    
Sbjct: 270 LAAAAGLAPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER--- 326

Query: 309 WMMEIYDQTHPSIT 322
            +  +    HP   
Sbjct: 327 -LKSLVRDLHPLAE 339


>gi|260063566|ref|YP_003196646.1| putative site-specific recombinase [Robiginitalea biformata
           HTCC2501]
 gi|88783010|gb|EAR14184.1| putative site-specific recombinase [Robiginitalea biformata
           HTCC2501]
          Length = 297

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 145/307 (47%), Gaps = 12/307 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + + L +E+  +  T+++Y  D   F    + Y  E+     +    Y  IR++I  
Sbjct: 3   LEAFAKYLTLEKKYAAHTVKAYLADLDAF----SEYCREEQGEFALADQPYPVIRSWIIH 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                + +RS+ R ++ +KS+ KY  ++     S +   + LK    +    +E +   L
Sbjct: 59  LMESGLNNRSVNRKVASLKSYYKYQLRQGRIDASPLAAHKPLKIPRRVEIPFSESEMEGL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +        +E      R+  ++ LLY  G+R +E + L   ++  +Q TLR+ GK DK 
Sbjct: 119 LGEWEPSEGYE----AHRDKLVVELLYTTGMRRAELIGLKLGDVDLEQGTLRVTGKRDKE 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RI+PLLP + + I  Y +L         +  LF   RG  L   +  R I +    +   
Sbjct: 175 RILPLLPGIVREIRAYLELRGAHFKSGSEPHLFLTSRGNKLYENLVYRIINRYLSMVSAK 234

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FATHLL+ G D+ S++ +LGH  L++TQ+YT+    N    +  I+  +
Sbjct: 235 SKRSPHILRHTFATHLLNQGADMNSVKELLGHSSLASTQVYTH----NSIAELKRIHGTS 290

Query: 318 HPSITQK 324
           HP    K
Sbjct: 291 HPRNKTK 297


>gi|114778675|ref|ZP_01453487.1| tyrosine recombinase XerD [Mariprofundus ferrooxydans PV-1]
 gi|114551037|gb|EAU53599.1| tyrosine recombinase XerD [Mariprofundus ferrooxydans PV-1]
          Length = 299

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 82/298 (27%), Positives = 143/298 (47%), Gaps = 18/298 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           LQ L + RG S  T  SY  D      +   +        ++ Q     I  +++K    
Sbjct: 16  LQRLAMLRGWSPQTTSSYRSDLLHADSYFVDHH------TSLMQADGKAILDYLAKLGRD 69

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +   +++R  S + ++  +L+ + +  +    ++  L+KS  LP+ ++E     L+   
Sbjct: 70  GMKPTTIQRRRSALSTWFTWLQDQNLREDHPARHLPKLRKSRPLPKMMSEHDVERLL--- 126

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
                     +  R+  +L LLY  G+R+SE +SLT   +  D   LR+ GKGDK R++P
Sbjct: 127 --AAPETEDPVGLRDRCMLELLYATGVRVSELVSLTRGQVEMDAGLLRVIGKGDKERLIP 184

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
                 + + ++  L P          LF G  G  +    F   I++     G+    +
Sbjct: 185 FGEEAGQWLQQWLLLRP---AKPASPYLFAGRGGHAMTRQNFWLRIKRYATMAGIMPLPS 241

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            HTLRH+FATHLL++G DLR++Q +LGH  ++TT+IYT+V+       M ++ + +HP
Sbjct: 242 PHTLRHAFATHLLNHGADLRAVQMLLGHAHVTTTEIYTHVSRAR----MHDLVNHSHP 295


>gi|319442272|ref|ZP_07991428.1| integrase/recombinase [Corynebacterium variabile DSM 44702]
          Length = 312

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 93/317 (29%), Positives = 146/317 (46%), Gaps = 28/317 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           R++W ++L  ERGLS  TL++Y  D  ++L +L     E +T+ T    +  +I  FI+ 
Sbjct: 9   RRDWFRHLRTERGLSSNTLENYGRDADRYLTWLE---GEGLTVAT---ATVADIERFITD 62

Query: 78  RRT-------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
            R        + +   S  RSLS ++S   +  + +         +   ++   LP+AL 
Sbjct: 63  LRKGHEVTGGRPLAQTSAARSLSTVRSLHAFAARDRGIP-DAADAVPVTQQRADLPKALT 121

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             Q   L++ V +    + + +D R+ A++ LLY  G RISE L L   +I   Q T+ +
Sbjct: 122 IDQVTALIEAVPVG--EDARPLDLRDRALVELLYSTGARISEVLDLNVDDIDRTQDTVLL 179

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-------LPLFRGIRGKPLNPGVF 243
           +GKGD  R+VP+      A+  Y       L              LF    G+ +     
Sbjct: 180 RGKGDHERVVPVGTPALAAVDAYLVRARPTLAARGSGRAGSDGAALFLTASGRRMRRQSG 239

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              +       GL    + H LRHSFATHLL+ G D+R +Q +LGH  + TTQIY  V  
Sbjct: 240 FNVVAAAGEKAGLGK-VSPHALRHSFATHLLAGGADIRVVQELLGHSHVVTTQIYAKVTP 298

Query: 304 KNGGDWMMEIYDQTHPS 320
               D + E +  +HP 
Sbjct: 299 ----DLLRESWALSHPR 311


>gi|269218465|ref|ZP_06162319.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269211576|gb|EEZ77916.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 255

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 80/261 (30%), Positives = 126/261 (48%), Gaps = 12/261 (4%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           I  +   ++ +F      + +   S+ RS++ ++SF  +  +   T  +   ++R  K  
Sbjct: 3   ISDVRPEDVASFAECL--EGMARASVARSMAAVRSFHAFAFEEGRTGANPAADVRPPKIP 60

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           + LP+A++          ++            R+ A+L +LYG G RISEA+ L+  ++ 
Sbjct: 61  SRLPKAMDIDDVAA----LIAAGGAGEGPAPLRDRALLEVLYGTGARISEAVGLSVDDVD 116

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNP 240
              ++ R+ GKG K R+VPL     +AI  Y       L  +      LF   RG+PL+ 
Sbjct: 117 LAGASARLFGKGRKERVVPLGGYAVEAIDAYLVRARPSLASSGPGTPSLFLNTRGRPLSR 176

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                 I+       L +  + HTLRHSFATHLL  G D+R +Q +LGH  LSTTQIYT 
Sbjct: 177 QSAWAIIQNAAERAKLSVHVSPHTLRHSFATHLLQGGADIRVVQELLGHSSLSTTQIYTM 236

Query: 301 VNSKNGGDWMMEIYDQTHPSI 321
           V+     D + E+Y   HP  
Sbjct: 237 VS----RDTVREVYALAHPRA 253


>gi|157826278|ref|YP_001493998.1| site-specific tyrosine recombinase XerC [Rickettsia akari str.
           Hartford]
 gi|166918897|sp|A8GQ15|XERC_RICAH RecName: Full=Tyrosine recombinase xerC
 gi|157800236|gb|ABV75490.1| site-specific tyrosine recombinase XerC [Rickettsia akari str.
           Hartford]
          Length = 305

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 115/302 (38%), Positives = 175/302 (57%), Gaps = 9/302 (2%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              W + L ++R  S  T+ SY  D + FL F+ +Y  E +TI  I+      IR++++K
Sbjct: 10  IDKWQKYLVLQRNYSNYTVISYNNDLKNFLEFMNYYNSELVTINHIKNADIRLIRSWLAK 69

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R        S+ R LS +K+F ++L+K        I ++++ KK+  LP+AL+E   +  
Sbjct: 70  RNYDNFTTSSIARGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSEDDVVVS 129

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +++  +      KW++ RN ++L L+Y  GLRISEALS+T  + + +   +RI GKG K 
Sbjct: 130 LEH--IEEYGNVKWVELRNKSLLVLIYASGLRISEALSITKLH-LQNLEFIRIIGKGSKE 186

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RI+P LP  +  I +Y ++ P+ L  N   P+FRG RGK L P VF R + +L+ + GLP
Sbjct: 187 RIIPWLPIAKNLITQYLEILPYKLGDNE--PIFRGKRGKKLQPQVFNRELIKLKHFYGLP 244

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              TAH+ RHSFA+HLL  G +LRSIQ +LGH  LSTTQ YT  + K     +  +Y   
Sbjct: 245 QHLTAHSFRHSFASHLLERGAELRSIQELLGHKSLSTTQNYTKTSIKR----LEAVYTTA 300

Query: 318 HP 319
           +P
Sbjct: 301 YP 302


>gi|332187766|ref|ZP_08389500.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas
           sp. S17]
 gi|332012116|gb|EGI54187.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas
           sp. S17]
          Length = 292

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 107/301 (35%), Positives = 167/301 (55%), Gaps = 16/301 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++ ++L ++   S  T+++Y     +   FL  +   ++    + +++ T++RA+++ RR
Sbjct: 7   DYYRHLTVDLRRSDHTVRAYVATAERLTGFLTRHWGSEVDAGALSRITATDLRAYLAFRR 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +   S  R LS +++FL++              ++  ++  S+PR       + L +
Sbjct: 67  GEGLTAASTARELSAVRTFLQFAGIE-------PPALKGPRRKRSMPRPQAPADIIALAE 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           +V    +    WI AR+ A+L LLYG GLRI EAL+L    +   + TLR+ GK DK RI
Sbjct: 120 DVAEDAAEP--WIAARDWAVLLLLYGAGLRIGEALALPAAILPLGE-TLRVLGKRDKTRI 176

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPLLP VR+AI  Y         +  + PLFRG +G PL+P + +R +R  R  LGL   
Sbjct: 177 VPLLPQVREAIERY--AAQMPFAVEGREPLFRGAKGGPLSPAIIRRSVRGARERLGLGAR 234

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           TT H LRHSFATHLL  G DLR +Q +LGH  LS+TQIYT V++      +++IY   HP
Sbjct: 235 TTPHALRHSFATHLLGRGADLRQLQELLGHASLSSTQIYTAVDAAR----LLDIYRTAHP 290

Query: 320 S 320
            
Sbjct: 291 R 291


>gi|227504796|ref|ZP_03934845.1| site-specific tyrosine recombinase XerC [Corynebacterium striatum
           ATCC 6940]
 gi|227198646|gb|EEI78694.1| site-specific tyrosine recombinase XerC [Corynebacterium striatum
           ATCC 6940]
          Length = 299

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 79/314 (25%), Positives = 142/314 (45%), Gaps = 20/314 (6%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E  + +L +  +++ ++  + RG S  T++ Y  D R              ++       
Sbjct: 6   EEPTGQLAEAIEDFAEHQLLVRGRSAATVKGYRSDLRDLAR----------SVPDFASFD 55

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
              +RA++ +   Q     +L R  +  ++F  +  +           + + K    LP+
Sbjct: 56  LNALRAWLGEAVAQGKSRATLARRTAAARAFSTWAVREGHLQADVAARLVSPKVGKHLPK 115

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L   +A  LV N     +   +    R+SA+L LLY  G+R++E + L   ++   + T
Sbjct: 116 VLAATEAGELVGN----AASHDEVHFLRDSAMLELLYATGMRVAELVGLDVGDLDLHRRT 171

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
             + GKG+K R+VP   +   A+  + +     L  +    +F G RG  ++    +R +
Sbjct: 172 ALVTGKGNKQRVVPFGDAASDALATWIEKGRLQLAGDT-DAVFVGTRGGRIDQRQVRRVV 230

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +  +  G     T H LRH+ ATHLL  G DLR +Q +LGH  L TTQ+YT+V++K   
Sbjct: 231 EKAAQITGAT-GLTPHGLRHTAATHLLEGGADLRVVQELLGHSSLQTTQVYTHVSAKR-- 287

Query: 308 DWMMEIYDQTHPSI 321
             + + Y + HP  
Sbjct: 288 --LKDAYSRAHPRA 299


>gi|23335386|ref|ZP_00120622.1| COG0582: Integrase [Bifidobacterium longum DJO10A]
 gi|189439114|ref|YP_001954195.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum
           DJO10A]
 gi|317482492|ref|ZP_07941508.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689440|ref|YP_004209174.1| tyrosine recombinase [Bifidobacterium longum subsp. infantis 157F]
 gi|254799326|sp|B3DQV1|XERC_BIFLD RecName: Full=Tyrosine recombinase xerC
 gi|189427549|gb|ACD97697.1| Integrase [Bifidobacterium longum DJO10A]
 gi|316916044|gb|EFV37450.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320460776|dbj|BAJ71396.1| tyrosine recombinase [Bifidobacterium longum subsp. infantis 157F]
          Length = 355

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 84/366 (22%), Positives = 149/366 (40%), Gaps = 64/366 (17%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + S +   +  +++  L+  RGLS  TL++Y  D    L        E   +  + +++ 
Sbjct: 1   MSSTQFDGDIDSFVSYLKSNRGLSANTLKAYRADLTACLHLF-----ELRGVTDLNEITL 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++R++++   ++     S+ R    ++ F  +  +  +TT      +      ++LP  
Sbjct: 56  DDLRSWMA-VESRDHARSSMARKTVAVRGFFAWAYEHGLTTTDPAATLMTPSIPSTLPAV 114

Query: 129 LNEKQALTLVD---------------------------------------------NVLL 143
           L E QA  L+D                                                 
Sbjct: 115 LTESQAEQLLDVAEHAVATNQYKDDGGAAAAPGSGKAAGKTADKSADTVNRSEAPARADK 174

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
             +        RN+AIL LLY  G+R++E +S+   +I     T+++ GKG+K R+VP  
Sbjct: 175 RDNARVTAESQRNAAILELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFG 234

Query: 204 PSVRKAILEYYDLCPFDL--------NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
              ++A+  + +     L               LF G RG  ++  + +  + +  R  G
Sbjct: 235 LPAQRALETWLEQGRPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAG 294

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +P   + H LRHS ATH+L  G DLR +Q +LGH  L TTQ YT+V+ +     +   Y 
Sbjct: 295 VP-DISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQ----LKNRYG 349

Query: 316 QTHPSI 321
           Q  P  
Sbjct: 350 QAFPRA 355


>gi|332291018|ref|YP_004429627.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169104|gb|AEE18359.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 295

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 148/304 (48%), Gaps = 13/304 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L +E+  SK T+ +YE D  +FL F+    +E      +  + Y +IR++I    
Sbjct: 5   SFLDYLSLEKNYSKHTVIAYEKDVLEFLAFVKITFDE----SNLVDIHYAQIRSWIVSLV 60

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              + +R++ R +S +K++ K+L K      S +    +LK    L    +E +   + D
Sbjct: 61  DNDVSNRTVNRKISSLKAYYKFLLKIGEVEASPLAKHTSLKTPKRLQIPFSEVEVGAVFD 120

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                      +   R+  I+ LLY  G+R +E + LT  +I   Q T++I GK +K RI
Sbjct: 121 ----RLKEADDFATLRDLLIVELLYATGMRRAELVDLTVGSIDVVQKTIKIIGKRNKERI 176

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VP+L SV      Y  +    +  + +  L    +G  +   +  R I +        L 
Sbjct: 177 VPMLSSVVVTYDRYIAVRS-SVASSGEDALLVTNKGAKIYSTLVYRIINRYFSETSDKLK 235

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           T+ H LRHSFATHLL+ G DL  ++ +LGH  L++TQ+YT+    N    + ++Y + HP
Sbjct: 236 TSPHILRHSFATHLLNQGADLNIVKELLGHASLASTQVYTH----NSVQALKDVYSKAHP 291

Query: 320 SITQ 323
              +
Sbjct: 292 RNKK 295


>gi|24375788|ref|NP_719831.1| integrase/recombinase XerC [Shewanella oneidensis MR-1]
 gi|34222793|sp|Q7ZAJ5|XERC_SHEON RecName: Full=Tyrosine recombinase xerC
 gi|24350736|gb|AAN57275.1|AE015863_4 integrase/recombinase XerC [Shewanella oneidensis MR-1]
          Length = 299

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 82/310 (26%), Positives = 148/310 (47%), Gaps = 19/310 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q +   ++ ER LS  T+++Y  + ++    L     E I    +  +     +  ++K
Sbjct: 9   LQQFEAYMQSERQLSAHTVRNYLYELQRGRELL----PEGI---DLLNVGREHWQQVLAK 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + +  RSL   LS +K + ++L +      +    +   K++  LP+ ++      L
Sbjct: 62  LHRKGLSPRSLSLWLSAVKQWGEFLLRAGAIELNPAKGLSAPKQAKPLPKNIDVDSLTHL 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++            +  R+ AI+ L Y  GLR++E  +L   ++  DQ  +R+ GKG+K 
Sbjct: 122 LEI------DGNDPLTLRDKAIMELFYSSGLRLAELAALDLSSVQYDQREVRVLGKGNKE 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RIVP+      AI  + +        +    LF   +GK L+    Q  + +  +   L 
Sbjct: 176 RIVPVGRYAIDAISAWLECRRQIPCEDN--ALFVTEKGKRLSHRSIQARMSKWGQEQALS 233

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           +    H LRHSFATH+L +  DLR++Q +LGH  LSTTQIYT+++ ++    + ++YD  
Sbjct: 234 MRVHPHKLRHSFATHMLESSADLRAVQELLGHENLSTTQIYTSLDFQH----LAKVYDNA 289

Query: 318 HPSITQKDKK 327
           HP   ++  K
Sbjct: 290 HPRAKKQQDK 299


>gi|238022334|ref|ZP_04602760.1| hypothetical protein GCWU000324_02241 [Kingella oralis ATCC 51147]
 gi|237866948|gb|EEP67990.1| hypothetical protein GCWU000324_02241 [Kingella oralis ATCC 51147]
          Length = 300

 Score =  226 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 81/302 (26%), Positives = 143/302 (47%), Gaps = 20/302 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L +L ++  LS+ TL +Y  D  +    LA          +++     ++ A I   + Q
Sbjct: 17  LDHLWLQERLSQNTLDAYRRDLTKIATRLANEH------SSLKTTDAVQLAAAIYVAQEQ 70

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
               RS  R+LS  K    +L++    +++   ++R  K++ +LP  + E+    L+   
Sbjct: 71  ---PRSQARALSACKRLYAWLEETGQRSDNPCRDLRTAKQARTLPPIITEQHITDLL--- 124

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
             +          R+ A+L L+Y  GLR+SEA+ L    I      +   GKGDK RIVP
Sbjct: 125 --NAPDTETPHGLRDKALLELIYATGLRVSEAVGLQLNEINLQSGMVNTIGKGDKQRIVP 182

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +       +  Y       L  N +   +F   +   ++  +    + +     G+P   
Sbjct: 183 MGEEAVYWLEHYLQHARPALLKNARCEAVFVSQKKTGISRQLAWMAVSRYAEQAGMP-HI 241

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H LRH+FATHL+++G DLR +Q++LGH  ++TTQIYT+V ++     + ++ D+ HP 
Sbjct: 242 SPHDLRHAFATHLVNHGADLRVVQTLLGHADIATTQIYTHVANER----LKQVVDKFHPR 297

Query: 321 IT 322
             
Sbjct: 298 AK 299


>gi|304413311|ref|ZP_07394784.1| site-specific tyrosine recombinase [Candidatus Regiella insecticola
           LSR1]
 gi|304284154|gb|EFL92547.1| site-specific tyrosine recombinase [Candidatus Regiella insecticola
           LSR1]
          Length = 252

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 80/254 (31%), Positives = 125/254 (49%), Gaps = 11/254 (4%)

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +++ F ++R        S  R LS IK F +YL + K+        + + K    LP+ L
Sbjct: 8   DLQRFFAERIDSHYKATSSARLLSAIKRFFQYLYREKLRINDPTALLSSPKLPQRLPKDL 67

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +EKQ   L     L+  +    +  R+  +L +LY  GLR+SE + L   +I   Q  LR
Sbjct: 68  SEKQVEAL-----LNAPNVDIPLQLRDKTMLEVLYATGLRVSELVGLIISDISLRQGVLR 122

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           + GKG+K R+VPL       I +Y     P+ +N       F   R + +    F   I+
Sbjct: 123 VIGKGNKERLVPLGEEALYWIEQYIEHGRPWLVNGQALDAFFPSNRCQKMTRQTFWYRIK 182

Query: 249 QLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                  +     + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++   
Sbjct: 183 HYAILANIDSERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSNLSTTQIYTHVATER-- 240

Query: 308 DWMMEIYDQTHPSI 321
             + +++ + HP  
Sbjct: 241 --LKQLHQRHHPRA 252


>gi|254418058|ref|ZP_05031782.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
 gi|196184235|gb|EDX79211.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
          Length = 306

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 78/319 (24%), Positives = 133/319 (41%), Gaps = 25/319 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  + + +L+ + +ER  S  TL +Y          LA           + Q     +  
Sbjct: 1   MTPQIEAFLEMMAVERDASPHTLSAYGR-------DLADAEAALAEAGGLMQADQEALEV 53

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           + +    + +   +  R  S  + F ++       T+     +   K+   LP+ L+  +
Sbjct: 54  WFADLSRRGLSAATAARRRSSARQFYRFALAEGWRTDDPSRRLDAPKQGRPLPKLLSRDE 113

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+       +     +     A++ + Y  GLR+SE L L    +  D + L ++GK
Sbjct: 114 IDRLLAAAAARDAAGGLRL----VALVEMAYASGLRVSELLGLKVDAVRRDPAYLIVRGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI--------QLPLFRGI-RGKPLNPGVFQ 244
           G K R+ PL  + R+AI  +       L               LF    R   L P  F 
Sbjct: 170 GGKERLAPLNTAAREAIKAWLTARDARLKGKDGRKPEAPDSPWLFPSSGRTGHLTPRRFA 229

Query: 245 RYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           + + +     G+ P   + H LRH+FATHLL  G DLR +Q++LGH  ++TTQIYT+V +
Sbjct: 230 QLLDEAAPVAGIDPARVSPHVLRHAFATHLLEGGADLRVVQTLLGHADIATTQIYTHVAT 289

Query: 304 KNGGDWMMEIYDQTHPSIT 322
               D + ++  Q HP   
Sbjct: 290 ----DRLAQVVQQNHPLAR 304


>gi|84516057|ref|ZP_01003417.1| tyrosine recombinase XerD [Loktanella vestfoldensis SKA53]
 gi|84509753|gb|EAQ06210.1| tyrosine recombinase XerD [Loktanella vestfoldensis SKA53]
          Length = 306

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 86/318 (27%), Positives = 138/318 (43%), Gaps = 23/318 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +  Q +LQ    E   +  T  +Y  D + F  +LA             Q++  +I +
Sbjct: 1   MARWVQTFLQAQAAELDAATNTQLAYARDLQGFAEWLASRG------LHFMQVTQDQIES 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++       +   +  R LS IK   ++        ++  L ++   ++  LP+ L+  +
Sbjct: 55  YLIDCAADGLAKSTRARRLSAIKQLFRFAYDEGWRADNPALQIKGPGRAQRLPKTLDLAE 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D      +  +     RN  ++ LLY  G+R+SE +SL       D   L ++GK
Sbjct: 115 VDRLLD-----AARASPRDGLRNGCLMELLYATGMRVSELVSLPVSAARGDPRMLLVRGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPF------DLNLNIQLPLFRGI-RGKPLNPGVFQRY 246
           G K R+VPL P  R A+  +                     LF    +   L    F   
Sbjct: 170 GGKERLVPLSPPARAAMAAWLAARDAAQEVAQKAGKPASKFLFPSHGKAGHLTRHAFFGL 229

Query: 247 IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           I+      GL P   T H LRH+FATHLL+ G DLRSIQ++LGH  ++TT+IYT+V  + 
Sbjct: 230 IKGFAVTAGLSPERVTPHVLRHAFATHLLAGGADLRSIQTMLGHADIATTEIYTHVLDQR 289

Query: 306 GGDWMMEIYDQTHPSITQ 323
             D ++    Q HP    
Sbjct: 290 LTDLVL----QHHPLAKP 303


>gi|157825624|ref|YP_001493344.1| site-specific tyrosine recombinase XerD [Rickettsia akari str.
           Hartford]
 gi|157799582|gb|ABV74836.1| site-specific tyrosine recombinase XerD [Rickettsia akari str.
           Hartford]
          Length = 306

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 90/320 (28%), Positives = 151/320 (47%), Gaps = 27/320 (8%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ++    +L+ L  ER LSK ++ SY+ D   F  +LA      + I      +   +R +
Sbjct: 1   MEFISQFLEMLLAERALSKNSILSYKRDLCDFQNYLAKQRLSALNI------TTANVRDW 54

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I       +  RS+ R +S +K++ ++L     TT + +LN+   K  N LP  L+  Q 
Sbjct: 55  IEYLANNDLQARSINRKISTVKNYYEFLISENHTTFNPVLNVDLPKYQNKLPEILSIDQI 114

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-------QST 187
            +L++      S +      R +A+++LLY  GLR+SE +SL   +I+ +       +  
Sbjct: 115 KSLLEYC----SQDNSPEGIRLNAMIHLLYASGLRVSELVSLKLSDILTNKTSKGEVRKI 170

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIR-GKPLNPGVF 243
             + GKG+K R++ +      +I +Y  +    +N       + LF        +    F
Sbjct: 171 FSVLGKGNKERVIVINEQAVISIAKYLAIRDIFVNKAKPKNLIYLFPSSALTGYMTRQNF 230

Query: 244 QRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              ++    Y  L P   + H LRHSFA+HLL  G DLR IQ +LGH  +STTQIYT++ 
Sbjct: 231 AILLKSAALYANLNPEHVSPHILRHSFASHLLEGGADLRVIQDLLGHSDISTTQIYTHLQ 290

Query: 303 SKNGGDWMMEIYDQTHPSIT 322
           + +    ++      HP  T
Sbjct: 291 THHLKKALL-----HHPLNT 305


>gi|49474798|ref|YP_032840.1| integrase /recombinase xerD [Bartonella quintana str. Toulouse]
 gi|49240302|emb|CAF26784.1| Integrase /recombinase xerD [Bartonella quintana str. Toulouse]
          Length = 315

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 78/319 (24%), Positives = 148/319 (46%), Gaps = 22/319 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY--TEIRAFI 75
             ++L+ +  ERG S  TL +Y+ D +        + ++++++ ++   S    ++   +
Sbjct: 7   IDHFLEMMSAERGASTHTLAAYQHDLQ--------WAQDELSLHSVSLFSAQKEDLIGLL 58

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           S          S  R LS ++ F ++L    +  +    ++   ++   LP+ ++E    
Sbjct: 59  SLMHILGFAASSQARRLSTLRQFYRFLYAEGMRVDDPSHDLDAPRQGRPLPKVISEDGVT 118

Query: 136 TLVDNVLLHTSHETKWIDARNSAI-----LYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            L+D   L  +           A+     + +LY  GLRISE +SL  Q +   + ++ +
Sbjct: 119 KLLDLAQLEVNQADYGSKDHFRALRLQVLIEMLYATGLRISELVSLPVQAVRGKEYSILV 178

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQ 249
           +GKG K RIV L     + + ++  L     +    L LF        +   V  R ++ 
Sbjct: 179 RGKGKKERIVLLSKKACQVLSQWLSLRDQRKDA-ASLYLFPARSETGYIARQVVARELKG 237

Query: 250 LRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           L +  G+     + H LRH+FA+HLL NG DLR++Q +LGH  ++TTQIYT+V       
Sbjct: 238 LAKRAGIKSSGFSPHVLRHAFASHLLQNGADLRAVQHLLGHSDIATTQIYTHV----LEA 293

Query: 309 WMMEIYDQTHPSITQKDKK 327
            +  + ++ HP   ++  +
Sbjct: 294 GLYRLVNEHHPLADEQRAQ 312


>gi|3860920|emb|CAA14820.1| INTEGRASE/RECOMBINASE XERD (xerD) [Rickettsia prowazekii]
          Length = 335

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 94/319 (29%), Positives = 156/319 (48%), Gaps = 27/319 (8%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           + ++    +L+ L  ER LSK ++ SY+ D   F  +LA     ++ I      +   IR
Sbjct: 23  KFMEFIAQFLEMLLAERALSKNSILSYKRDLLDFQHYLAAQKISELNI------TTGNIR 76

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            +I    +  +  RS+ R +S IKS+  +L     T  + +LN+   K  N LP  L+  
Sbjct: 77  KWIEYLASNNLHARSINRKISTIKSYYAFLISENHTKFNPVLNIDLPKYQNKLPIILSID 136

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ---STLR 189
           Q   +++      S +      R +A++ LLY  GLR+SE +SL   +I+ +     T+R
Sbjct: 137 QIKLILEYC----SKDNTPEGIRLNAMINLLYASGLRVSELVSLKLADILTNNTSKGTVR 192

Query: 190 ----IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRG-KPLNPG 241
               + GKG+K R++ +      +I++Y ++  F +N         LF        +   
Sbjct: 193 KIFSVLGKGNKERVIVINDQAVLSIIKYLEIRDFFINKAKSKNLIYLFPSSAVAGYMTRQ 252

Query: 242 VFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            F   ++ +  Y GL P   + H LRHSFA+HLL  G DLR IQ +LGH  +STTQIYT+
Sbjct: 253 NFAILLKSVALYTGLNPEHVSPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 312

Query: 301 VNSKNGGDWMMEIYDQTHP 319
           +++ +    ++      HP
Sbjct: 313 LHTNHLKKALL-----HHP 326


>gi|238651031|ref|YP_002916888.1| site-specific tyrosine recombinase XerD [Rickettsia peacockii str.
           Rustic]
 gi|238625129|gb|ACR47835.1| site-specific tyrosine recombinase XerD [Rickettsia peacockii str.
           Rustic]
          Length = 306

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 92/312 (29%), Positives = 151/312 (48%), Gaps = 27/312 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+ L  ER LSK ++ SY+ D   F  +LA +   ++ I      +   IR +I    
Sbjct: 6   QFLEMLLAERALSKNSILSYKRDLFDFQNYLAKHKLSELNI------TTENIRDWIEYLA 59

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           +  +  RS+ R +S IKS+ ++L     T  + +LN+   K  N LP  L+  Q  +L++
Sbjct: 60  SDDLQARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIAQIKSLLE 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-------QSTLRIQG 192
               H S +      R +A+++LLY  GLR+SE +SL   +I+ +       +    + G
Sbjct: 120 ----HCSQDNSPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNKTSTGEVRKIFSVLG 175

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIR-GKPLNPGVFQRYIR 248
           KG+K R++ +      +I +Y  +    +N       + LF        +    F   ++
Sbjct: 176 KGNKERVIVINEQAVISIAKYLAIRGVFVNKAKPRNLIYLFPSSALAGYMTRQNFAILLK 235

Query: 249 QLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
               Y GL     + H LRHSFA+HLL  G DLR IQ +LGH  +STTQIYT++ + +  
Sbjct: 236 SAALYAGLNHEYISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQTNHLK 295

Query: 308 DWMMEIYDQTHP 319
             ++      HP
Sbjct: 296 KALL-----HHP 302


>gi|271964493|ref|YP_003338689.1| tyrosine recombinase XerD [Streptosporangium roseum DSM 43021]
 gi|270507668|gb|ACZ85946.1| tyrosine recombinase XerD [Streptosporangium roseum DSM 43021]
          Length = 308

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 89/313 (28%), Positives = 147/313 (46%), Gaps = 23/313 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L +L +ERGL+  TL SY  D  +++  L           T  +++  ++ AF++  R
Sbjct: 10  SYLAHLALERGLAANTLASYRRDLLRYVEHLKSRGR-----VTFGEIAEGDVTAFLAALR 64

Query: 80  T-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
                 Q +   S  R++S ++   ++  +  ++       +R  ++   LP+A++    
Sbjct: 65  AGDEEHQALVASSAARAVSAVRGLHRFALREGVSDHDPAHGVRPPRQLRRLPKAISVNDV 124

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQG 192
             L+      +  E   +  RN A+L LLYG G RISEA+ L   ++    D   +R++G
Sbjct: 125 ERLI----AASGPEGAPLTMRNRALLELLYGTGARISEAVGLAVDDVDLGSDTQQVRLRG 180

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQL 250
           KG + R+VPL    R+A+  Y       +  + +    LF   RG  L        ++  
Sbjct: 181 KGGRTRLVPLGRFAREALGAYLARARPGIAAHGRGTSGLFLNARGGRLTRQGAWEVLQAA 240

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               GL    + H LRHSFATHLL  G D+R +Q +LGH  ++TTQ+YT V      D +
Sbjct: 241 AERGGLA-GISPHILRHSFATHLLDGGVDVRVVQELLGHASVTTTQVYTLVT----VDKL 295

Query: 311 MEIYDQTHPSITQ 323
            E Y   HP    
Sbjct: 296 REAYAAAHPRARH 308


>gi|225021106|ref|ZP_03710298.1| hypothetical protein CORMATOL_01118 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946106|gb|EEG27315.1| hypothetical protein CORMATOL_01118 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 331

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 81/316 (25%), Positives = 144/316 (45%), Gaps = 22/316 (6%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + S +L +   ++ ++L +  G S  T+  Y  D   F               T    + 
Sbjct: 35  VASTQLQEAIADFAEHLHLVVGRSPATVAGYRSDLIDFCQH----------AHTFEDFTL 84

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +RA++           ++ R  +  +SF  + +++     +    +   K   SLP  
Sbjct: 85  VNLRAWLGAAVDAGKSRATIARRAAAARSFSSWCERQGYLDTNVAARLAVPKSGRSLPTV 144

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           +    A TL+    + +   T+    R++A+L LLY  G+R+SE   +   ++   ++T+
Sbjct: 145 VTPTAAETLM----VSSQATTEPEYLRDTAMLELLYATGIRVSELCGIDLADVNYSRNTV 200

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQR 245
           ++ GKG+K R+VP       A+  + D     L          LF G RG  ++P + + 
Sbjct: 201 KVTGKGNKQRVVPFGNPAASALKAWRDHGRPHLLNPKKPAHNALFLGARGGRIDPRMVRT 260

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            + +  + LG+      H+LRHS ATH+L  G DLR +Q +LGH  L TTQIYT+V++  
Sbjct: 261 VVARAGKQLGVD-GLGPHSLRHSAATHMLDGGADLRVVQELLGHSSLQTTQIYTHVSTTR 319

Query: 306 GGDWMMEIYDQTHPSI 321
               + + Y+Q HP  
Sbjct: 320 ----LKQAYNQAHPRA 331


>gi|163747117|ref|ZP_02154473.1| tyrosine recombinase XerD [Oceanibulbus indolifex HEL-45]
 gi|161379678|gb|EDQ04091.1| tyrosine recombinase XerD [Oceanibulbus indolifex HEL-45]
          Length = 327

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 86/302 (28%), Positives = 136/302 (45%), Gaps = 20/302 (6%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
            T  +Y  D + F  FLA    + +T       S  E+  ++     Q +   +  R LS
Sbjct: 28  NTQLAYGRDLKDFDAFLARQNHDFLTA------SRGEVEDYLVYCDAQGLAKSTRARRLS 81

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            IK   ++  +  +  ++  + +    +   LP+ L+E++   L+D      S       
Sbjct: 82  AIKQLYRFAFEEGLREDNPAVQIAGPGQDRRLPKILSEEEVDRLLDA--ARNSGRALADQ 139

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            RN+ ++ LLY  G+R+SE +SL       D   L I GKG + R+VPL    R A+  +
Sbjct: 140 LRNTCLMELLYATGMRVSELVSLPVSAARGDPRLLLISGKGGRERLVPLSEPARDALAAW 199

Query: 214 YDLCP------FDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRRYLGLPL-STTAHTL 265
             +                  LF        L    F   I++     G+P    T HTL
Sbjct: 200 LVVRDKADEAAQAKGKPPARHLFPSRGVMGHLTRHRFYLLIKEFAVTGGVPPEKVTPHTL 259

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           RH+FATHLL+NG DLR+IQ++LGH  ++TT+IYT+V  +   D ++E     HP      
Sbjct: 260 RHAFATHLLANGADLRAIQTMLGHADVATTEIYTHVLEERLSDLVLE----RHPLAKDGT 315

Query: 326 KK 327
           +K
Sbjct: 316 RK 317


>gi|319407841|emb|CBI81494.1| integrase/recombinase XerD [Bartonella sp. 1-1C]
          Length = 312

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 82/315 (26%), Positives = 149/315 (47%), Gaps = 22/315 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS--YTEIRAFI 75
             ++L+ +  ERG S  TL +Y+ D +        + + K++  +I   S    ++   +
Sbjct: 7   IDHFLEMMSAERGASVCTLLAYQHDLQ--------WAQNKLSSHSISFFSAQREDLINLL 58

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           S  +       S  R LS ++ F ++L    +  +    ++ + ++   LP+ ++E    
Sbjct: 59  SLMQKAGCAATSQARRLSTLRQFFQFLYAEGLREDDPSSDIDSPRQGRPLPKIISEDAVT 118

Query: 136 TLVDNVLLHTSHETKWIDARNSAI-----LYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            L+D   L T            A+     L +LY  GLRISE +SL  Q +   +  + +
Sbjct: 119 KLLDFAQLETEQAESGTQNYYRALRFQVLLEMLYATGLRISELVSLPVQAVRGKEQFILV 178

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQ 249
           +GKG+K R+V L    R+ +L++  +     +    + LF        +      R ++ 
Sbjct: 179 RGKGEKERVVLLSEKARQILLQWLSVRDQRKDA-TSIYLFPARSSTGYIARQFVARGLKD 237

Query: 250 LRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           L +  G+   + + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V       
Sbjct: 238 LAKRAGIQSENFSPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQIYTHVLEAR--- 294

Query: 309 WMMEIYDQTHPSITQ 323
            +  + ++ HP + Q
Sbjct: 295 -LHRLVNEYHPLVDQ 308


>gi|15678913|ref|NP_276030.1| integrase-recombinase protein [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|73920472|sp|O26979|XERCL_METTH RecName: Full=Probable tyrosine recombinase xerC-like
 gi|2621988|gb|AAB85391.1| integrase-recombinase protein [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 311

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 101/320 (31%), Positives = 160/320 (50%), Gaps = 32/320 (10%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           +E  N PE++        +++L  LEI R  S  T+++Y+   + F  FL    +     
Sbjct: 18  LERYNFPELI--------EDYLIELEI-RNYSPNTIKTYKSIVKNFYEFLMNEDDLYDDR 68

Query: 61  QTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           + +R       + +I    R +K+    +      +K F ++           +  ++  
Sbjct: 69  RVLRSF-----KRYIQYLKRDKKVTQNYIYLVTVVVKKFFEFSGI------DCLEEVKAP 117

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHE--TKWIDARNSAILYLLYGCGLRISEALSLT 177
           K++ SLP++LNE +  +L++ V +        ++I  R+  IL LLY  GLR+SE +SL 
Sbjct: 118 KRTKSLPKSLNEDEVKSLINAVEVADDGSVIRRFIKTRDRLILSLLYSSGLRVSELVSLR 177

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
             +I  D+ T+RI+GKGDK RIV    + R  +++Y      +        LF    G P
Sbjct: 178 INDIDPDERTIRIRGKGDKDRIVLFDENTRDLLMDYLKRRIHE-----SEYLFLNRFGDP 232

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L P   Q  I+   R  G+    T H LRHSFATHLL NG D+R+IQ +LGH  LSTTQI
Sbjct: 233 LTPRYVQMMIKNYARKAGIKKKVTPHILRHSFATHLLKNGVDIRAIQQLLGHSNLSTTQI 292

Query: 298 YTNVNSKNGGDWMMEIYDQT 317
           YT+V+ +     +  +YD+ 
Sbjct: 293 YTSVDMQT----LKNVYDRA 308


>gi|187736389|ref|YP_001878501.1| integrase family protein [Akkermansia muciniphila ATCC BAA-835]
 gi|187426441|gb|ACD05720.1| integrase family protein [Akkermansia muciniphila ATCC BAA-835]
          Length = 295

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 87/308 (28%), Positives = 157/308 (50%), Gaps = 15/308 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +    + +++ L  E+GLS     +Y+   RQ L   A + E   T   + Q     + A
Sbjct: 1   MQTHLERFIRFLAAEKGLS----TAYQLSVRQTLEEFARFLEMDNT--GLAQTGIDTLSA 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+   + + +   S++  +  ++ F ++L    I  +   + +   ++  SLP  L++K 
Sbjct: 55  FLRHLQDRGMARSSMRVEMVHLRIFFRWLAGTGILEKDPSVFLEMPRQGLSLPHVLDQKT 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++++ +        +  R+ A+L ++Y CG+R+SE ++   ++   D++ +R+ GK
Sbjct: 115 VSNLLESIDIQ----DIPLGCRDRALLEMIYACGMRVSEIINCKLESFDKDEAFVRVLGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G+K R+VP+  S   A+  Y +     L     +  +F  +RG+PL     ++ +R+  R
Sbjct: 171 GNKTRLVPVGRSALDALQMYLEKGRPKLVRTGTKSHIFLTVRGRPLTRERIRQILRERAR 230

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRHSFATHLL NG DLR IQ +LGH  +STTQIYT++  +     +  
Sbjct: 231 AAGLEQHVFPHILRHSFATHLLENGADLRIIQEMLGHADISTTQIYTHLEQQR----LNS 286

Query: 313 IYDQTHPS 320
           I+ + HP 
Sbjct: 287 IHHRFHPR 294


>gi|332670384|ref|YP_004453392.1| integrase family protein [Cellulomonas fimi ATCC 484]
 gi|332339422|gb|AEE46005.1| integrase family protein [Cellulomonas fimi ATCC 484]
          Length = 322

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 87/322 (27%), Positives = 151/322 (46%), Gaps = 27/322 (8%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L      ++++L  +RGLS+ TL +Y+ D  +++ +L     E I  +   +++  ++  
Sbjct: 15  LRDALARYVEHLA-DRGLSENTLLAYQRDLDRYVAYL-----ESIGRRAPDEIAGQDVEG 68

Query: 74  FISKRRT-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           F+   RT     + + + S  R ++ ++ + ++L +  IT +     +R   +   LPRA
Sbjct: 69  FVDAVRTGSDGRRPLSESSAARLVAAVRGWHRFLARDGITVDDAARAVRPPAQPRRLPRA 128

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST- 187
           ++ +    L+D            + AR+ A+L LLY  G RISE + L   ++   +   
Sbjct: 129 ISVEDVERLLD----AAGRGEGPVPARDRALLELLYSTGARISEVVGLDLADLDRSERRP 184

Query: 188 -LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNPGV 242
            +R+   G K R+ PL      A+ EY       L    + + +L +F   RG  L+   
Sbjct: 185 AVRLAVGGAKQRVSPLGRRALSALTEYLTQARPALASGADRSDRLAVFLNTRGTRLSRQS 244

Query: 243 FQRYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               +R       LP +   + HTLRHSFATH+L+ G D+R +Q +LGH  +STTQIY  
Sbjct: 245 AWAVLRSAAHRASLPDADVISPHTLRHSFATHMLARGADVRVVQELLGHASVSTTQIYA- 303

Query: 301 VNSKNGGDWMMEIYDQTHPSIT 322
                  + + E Y   HP   
Sbjct: 304 ---TARDEALREAYTAAHPHAR 322


>gi|328955478|ref|YP_004372811.1| integrase family protein [Coriobacterium glomerans PW2]
 gi|328455802|gb|AEB06996.1| integrase family protein [Coriobacterium glomerans PW2]
          Length = 304

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 86/310 (27%), Positives = 146/310 (47%), Gaps = 22/310 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + ++  L    G S  T ++YE   R +L +      + + ++         +R++++ 
Sbjct: 7   IEGFIDFLLQVDGCSPETARAYEGHLRAYLSWQRRAHLDGLVLE------VPVVRSYLAD 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
               +   R++   LS I+S  ++L    IT    +  M+  +    LPR L ++Q   L
Sbjct: 61  LYDARRSPRTIAAHLSAIRSLSRWLLLEGITKTDAVATMQTPRIPTGLPRTLTQQQMEQL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +               +R++AIL LLY  G RISE  +L   ++  +Q  +R+ GKG K 
Sbjct: 121 L-----ALPDTASPTGSRDAAILELLYASGARISEIAALDIASLDAEQRCVRLLGKGSKE 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL-------NLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           RIVPL     + ++ Y D     L       + + +  LF   RG+ ++    +   R  
Sbjct: 176 RIVPLYRRALRRLVSYLDEGRPLLIRSRTLASDSDRTALFLSRRGRRMSADSLRCRFRAY 235

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            R  GLP   T H +RH+FAT LL+ G D+RS+Q +LGH  L+TTQ+YT++  +   D +
Sbjct: 236 ARIAGLPADITPHAMRHTFATDLLAGGADMRSVQELLGHASLATTQLYTHLTPERMKDAL 295

Query: 311 MEIYDQTHPS 320
                + HP 
Sbjct: 296 R----RAHPR 301


>gi|225025733|ref|ZP_03714925.1| hypothetical protein EIKCOROL_02637 [Eikenella corrodens ATCC
           23834]
 gi|224941514|gb|EEG22723.1| hypothetical protein EIKCOROL_02637 [Eikenella corrodens ATCC
           23834]
          Length = 301

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 78/314 (24%), Positives = 139/314 (44%), Gaps = 20/314 (6%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E +     +  +  L  L + R L+  TL  Y  D  +    L             +Q  
Sbjct: 6   EPLPAAWQEPIEQTLDELFLTRRLAANTLAGYRRDLEKVARRLHAQG------LDWQQAD 59

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
              +   +     +     S  R+LS +K    +L+ +   +++   ++R  ++  +LP 
Sbjct: 60  ADALANAVYAPDEK---PASQVRALSAVKQLYGFLQLQNRRSDNPAQHLRPPRQGRALPP 116

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            + E Q   L+                R+ A+L  LY  GLR+SEA  +  Q++   +  
Sbjct: 117 LIGEAQIDALL-----AAPDTETIFGLRDKAVLETLYATGLRVSEAAQMQLQDLDLQRGV 171

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRY 246
           + + GKG+K RIVPL       +  Y      +L        +F G +   ++  +  + 
Sbjct: 172 VTVIGKGNKQRIVPLGAEAVYWLERYLKTARGELLKHTPCDFVFVGQKRSGISRQLVWQM 231

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +++     G+    + H LRH+FATHL+++G DLRS+Q +LGH  L+TTQIYT+V ++  
Sbjct: 232 VKRYAAEAGIS-ELSPHGLRHAFATHLVNHGADLRSVQMMLGHASLNTTQIYTHVANER- 289

Query: 307 GDWMMEIYDQTHPS 320
              + ++  Q HP 
Sbjct: 290 ---LKQLVAQHHPR 300


>gi|58040221|ref|YP_192185.1| integrase/recombinase XerD [Gluconobacter oxydans 621H]
 gi|58002635|gb|AAW61529.1| Integrase/recombinase XerD [Gluconobacter oxydans 621H]
          Length = 311

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 93/310 (30%), Positives = 150/310 (48%), Gaps = 20/310 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + +L+ L  ERG +  T Q+Y  D   F    A          ++ +    E+R+++
Sbjct: 12  RHVEAFLEMLAAERGAALKTRQAYASDLADFATHCA--------PLSLSEARGEEVRSYL 63

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++     +  R+  R LS ++ F ++L    +  +      +  + ++SLPR L+E +  
Sbjct: 64  AELSRAGLAARTAARRLSCLRQFYRFLMLESVREDDPTERQQAPRITSSLPRPLDEDEIR 123

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L++       HE +  D  + A L LLY  GLRISE L+L    +      L ++GKG 
Sbjct: 124 LLLETGTRG--HENERRDIVSRAALELLYTTGLRISELLALPATCVHVRGPMLLVRGKGG 181

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRRYL 254
           + R+VPL  S R A  +   L  FD +L     LF G   +  L    F + +       
Sbjct: 182 RERLVPLSQSARDAADQ---LVHFDRDLG-SPWLFPGRDPQKHLTRQGFDKILLACALKA 237

Query: 255 GL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GL P   + H LRHSFA+HLL++G DLR++Q +LGH  ++TTQIYT V S+     + + 
Sbjct: 238 GLDPDRVSPHVLRHSFASHLLAHGADLRALQMLLGHADIATTQIYTQVMSER----LRQA 293

Query: 314 YDQTHPSITQ 323
               HP   +
Sbjct: 294 VAAHHPLARK 303


>gi|161729088|ref|NP_220744.2| site-specific tyrosine recombinase XerD [Rickettsia prowazekii str.
           Madrid E]
 gi|34223091|sp|Q9ZDG8|XERD_RICPR RecName: Full=Tyrosine recombinase xerD
 gi|292571969|gb|ADE29884.1| Tyrosine recombinase XerD [Rickettsia prowazekii Rp22]
          Length = 311

 Score =  225 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 94/317 (29%), Positives = 155/317 (48%), Gaps = 27/317 (8%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ++    +L+ L  ER LSK ++ SY+ D   F  +LA     ++ I      +   IR +
Sbjct: 1   MEFIAQFLEMLLAERALSKNSILSYKRDLLDFQHYLAAQKISELNI------TTGNIRKW 54

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I    +  +  RS+ R +S IKS+  +L     T  + +LN+   K  N LP  L+  Q 
Sbjct: 55  IEYLASNNLHARSINRKISTIKSYYAFLISENHTKFNPVLNIDLPKYQNKLPIILSIDQI 114

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ---STLR-- 189
             +++      S +      R +A++ LLY  GLR+SE +SL   +I+ +     T+R  
Sbjct: 115 KLILEYC----SKDNTPEGIRLNAMINLLYASGLRVSELVSLKLADILTNNTSKGTVRKI 170

Query: 190 --IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRG-KPLNPGVF 243
             + GKG+K R++ +      +I++Y ++  F +N         LF        +    F
Sbjct: 171 FSVLGKGNKERVIVINDQAVLSIIKYLEIRDFFINKAKSKNLIYLFPSSAVAGYMTRQNF 230

Query: 244 QRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              ++ +  Y GL P   + H LRHSFA+HLL  G DLR IQ +LGH  +STTQIYT+++
Sbjct: 231 AILLKSVALYTGLNPEHVSPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLH 290

Query: 303 SKNGGDWMMEIYDQTHP 319
           + +    ++      HP
Sbjct: 291 TNHLKKALL-----HHP 302


>gi|254451180|ref|ZP_05064617.1| tyrosine recombinase XerD [Octadecabacter antarcticus 238]
 gi|198265586|gb|EDY89856.1| tyrosine recombinase XerD [Octadecabacter antarcticus 238]
          Length = 313

 Score =  225 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 80/319 (25%), Positives = 138/319 (43%), Gaps = 25/319 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q +L+    E   +  T  +Y  D   F  +LA              ++   +  ++  
Sbjct: 12  IQAFLEAQAAELDAATNTQLAYARDLMDFSDWLAD--------THFAAVAQDHVEKYLIW 63

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q +   +  R LS IK   ++  +     ++  + +    +   LP+ L+  +   L
Sbjct: 64  CDAQGLAKATRARRLSAIKQLFRFAFEEGWRVDNPAIQISGPGRDKRLPKTLSHSEVDAL 123

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +     + + + K    R + ++ LLY  G+R++E +SL       D   L ++GKGDK 
Sbjct: 124 L-----NAARDAKKDPLRTTCLMELLYATGMRVTELVSLPVSAARGDPRMLLVRGKGDKE 178

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQL------PLFRGI-RGKPLNPGVFQRYIRQL 250
           R+VPL P  R A   +        +   +        LF    +   L    F   I+ L
Sbjct: 179 RMVPLSPPARAATAVWLKTRDKAEDATFKDGTPRSKFLFPSRGKLGHLTRQSFFNLIKDL 238

Query: 251 RRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
               G+     T HTLRH+FATHLL  G DLRSIQ++LGH  ++TT+IYT+V  +     
Sbjct: 239 ATAGGVTRSKVTPHTLRHAFATHLLEGGADLRSIQTLLGHVDVATTEIYTHVLDER---- 294

Query: 310 MMEIYDQTHPSITQKDKKN 328
           + ++  + HP    + + +
Sbjct: 295 LKQLVLEHHPLAQNRVQDD 313


>gi|85708393|ref|ZP_01039459.1| integrase [Erythrobacter sp. NAP1]
 gi|85689927|gb|EAQ29930.1| integrase [Erythrobacter sp. NAP1]
          Length = 295

 Score =  225 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 82/313 (26%), Positives = 144/313 (46%), Gaps = 25/313 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +    + +L  L  ERG +  TL +Y  D              +  +  + + S    RA
Sbjct: 1   MSAATRAFLDMLAAERGAAANTLAAYRRDL----------DGAEEALGDLDKAS----RA 46

Query: 74  FISKRRTQ--KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
            ++K   Q   +   ++ R  S ++ F  +        +     +   +    LP+ L+ 
Sbjct: 47  AVAKLSAQWASLAPSTVARKASALRQFFGFAVDEGWREDDPSGALPKPRTRRPLPKILSH 106

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           +   TL+    L   +  +    R  A+L +LYG GLR +E +SL   ++  D   + ++
Sbjct: 107 EAVETLLQRAELEA-NSGQPTALRQLALLEMLYGSGLRATELVSLPLVSVPRDAPLITVK 165

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG + R+VP+    ++A+ E+  + P D        LF    GK L+     + +++L 
Sbjct: 166 GKGGQARMVPVSERAKEALAEWVKVRPSD---PPTGHLFPSRGGKHLSRVRLFQILKELA 222

Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               L P   + H LRH+FATHLL  G DLR +Q++LGH  ++TTQIYT+V++      +
Sbjct: 223 VRADLDPAGISPHVLRHAFATHLLEGGADLRVLQTLLGHADIATTQIYTHVDAAR----L 278

Query: 311 MEIYDQTHPSITQ 323
           +E+ +  HP    
Sbjct: 279 VELVNSRHPLARP 291


>gi|319949186|ref|ZP_08023275.1| site-specific tyrosine recombinase XerD [Dietzia cinnamea P4]
 gi|319437172|gb|EFV92203.1| site-specific tyrosine recombinase XerD [Dietzia cinnamea P4]
          Length = 316

 Score =  225 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 77/316 (24%), Positives = 141/316 (44%), Gaps = 21/316 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L +L +E+G S  TL +Y  D  ++   LA      + +  +  ++   +  F ++
Sbjct: 11  IREYLDHLAVEKGASAHTLAAYRRDLDRYRRHLAA-----VGVDDLTAVTEAHVEDFRAR 65

Query: 78  RRTQK-------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
             T         +   S+ R+L+ ++   ++  +  +T       +   +    LP+AL 
Sbjct: 66  LATGDPDEGRPPLAPSSVARTLAAVRGLHRFATRDGVTDTDVAAAVAPPRPPRRLPKALP 125

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----MDDQS 186
             + + +++     T  +T     R+ A+L LLY  G R +E + L   ++      D  
Sbjct: 126 LDRMIAVIEA-AGDTGVDTDPARLRDRAMLELLYATGARAAELIGLDVDDLDGLDHPDGG 184

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           T+ ++GKG K R+VP+     +A+  Y       L       LF   RG  ++       
Sbjct: 185 TVILRGKGGKERLVPVGRPACEAVGAYLTRARPALAKRGGPALFLNTRGGRISRQTLWNV 244

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +       G+    + H+ RHSFATHLL  G D+R +Q +LGH  ++TTQ+YT V     
Sbjct: 245 VSAAAARAGVTQEVSPHSFRHSFATHLLDGGADIRVVQELLGHASVTTTQVYTLVT---- 300

Query: 307 GDWMMEIYDQTHPSIT 322
            D + E++ + HP   
Sbjct: 301 VDTLREVWAECHPRAR 316


>gi|67458963|ref|YP_246587.1| site-specific tyrosine recombinase XerD [Rickettsia felis
           URRWXCal2]
 gi|75536599|sp|Q4UM01|XERD_RICFE RecName: Full=Tyrosine recombinase xerD
 gi|67004496|gb|AAY61422.1| Tyrosine recombinase XerD [Rickettsia felis URRWXCal2]
          Length = 306

 Score =  225 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 90/317 (28%), Positives = 151/317 (47%), Gaps = 27/317 (8%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ++    +L+ L  ER LSK ++ SY+ D   F  +LA     ++ I      +   +R +
Sbjct: 1   MEFISQFLEMLLAERALSKNSILSYKRDLFDFQNYLAKQRLSELNI------TTENVRDW 54

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I    +  +  RS+ R +S IKS+ ++L     T  + +LN+   K  N LP  L+  Q 
Sbjct: 55  IEYLASNDLQARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIDQI 114

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-------QST 187
            +L++      S +      R +A+++LLY  GLR+SE +SL   +I+ +       +  
Sbjct: 115 KSLLEYC----SQDNSPEGIRLNAMIHLLYASGLRVSELVSLKLTDILTNKTSKGEVRKI 170

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIR-GKPLNPGVF 243
             + GKG+K R++ +      +I +Y  +    +N       + LF        +    F
Sbjct: 171 FSVLGKGNKERVIVINEQAVISIAKYLAIRDVFVNKAKPKNLIYLFPSSALAGYMTRQNF 230

Query: 244 QRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              ++    Y  L P   + H LRHSFA+HLL  G DLR IQ +LGH  +STTQIYT++ 
Sbjct: 231 AILLKSAALYANLNPEHISPHILRHSFASHLLEGGADLRVIQGLLGHADISTTQIYTHLQ 290

Query: 303 SKNGGDWMMEIYDQTHP 319
           + +    ++      HP
Sbjct: 291 TNHLKKALL-----HHP 302


>gi|326570632|gb|EGE20668.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis BC7]
 gi|326574796|gb|EGE24730.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis O35E]
          Length = 330

 Score =  225 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 87/309 (28%), Positives = 141/309 (45%), Gaps = 8/309 (2%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +W   L ++   SK T+ +Y+    QF  FL             R+   T  R F ++  
Sbjct: 29  SWCDELRLQ-NYSKHTITTYQTALIQFFNFLESDNYLGGDPLACRRQDLT--RFFSTRLE 85

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +KI   S K SLS I+ F ++L K+ +   +     +       LP   +E     L+D
Sbjct: 86  EEKIKPISAKLSLSAIRIFYQFLIKQGVIAVNPTTGYKIKSAPRKLPTVADELLIKQLLD 145

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                 + +  ++  R+ A+  L+Y  GLR+SE   L   ++  D   +R+ GKG+K R 
Sbjct: 146 QKTPEDTAKA-YLWIRDKAMFELMYSSGLRLSELAGLNMGDVNFDTGIVRVLGKGNKTRQ 204

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VP+      A+ +Y          N +        G  L+    Q  ++      G+ L+
Sbjct: 205 VPVGKKAMIALQDYLPHRNLWQKKNCKALFISERHGTRLSTRAIQLRLKVCATMAGIELN 264

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRH FA+H+LS+ GDLR+IQ +LGH  +STTQIYT+V+       + ++YD  HP
Sbjct: 265 MYPHLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHVDF----GALTKVYDHAHP 320

Query: 320 SITQKDKKN 328
              +    +
Sbjct: 321 RAYRTKNNH 329


>gi|121601884|ref|YP_988378.1| tyrosine recombinase XerD [Bartonella bacilliformis KC583]
 gi|120614061|gb|ABM44662.1| tyrosine recombinase XerD [Bartonella bacilliformis KC583]
          Length = 312

 Score =  225 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 81/318 (25%), Positives = 145/318 (45%), Gaps = 20/318 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY--TEIRAFI 75
              +L+ +  ERG S  TL +Y+ D +        + ++K++  ++   S    ++ + +
Sbjct: 7   IDRFLEMMSAERGASAHTLAAYQHDLQ--------WAQDKLSSCSVSLFSARKEDLISLL 58

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           S          S  R LS ++ F ++L   K+  +    ++   ++ + LP+ ++E    
Sbjct: 59  SLMHKAGFAATSQARRLSTLRQFYQFLYAEKLREDDPSGDIDAPRQGHPLPKIMSEDVVT 118

Query: 136 TLVDNVLLHTSHETKWIDARNSAI-----LYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            L+D   L T+           A+     + +LY  GLRISE +SL  Q +   +  + +
Sbjct: 119 KLLDFAQLETNQAEYGSKNYFRALRLQVLIEMLYATGLRISELVSLPVQTVRGKEQYILV 178

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +GKG K R+V L    R+ + E+  L     +               +      R ++ L
Sbjct: 179 RGKGGKERMVLLSAKARQVLSEWLVLRDQGKDATSPYLFPAHSSTGYIARQFIARGLKDL 238

Query: 251 RRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            +  G+     + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V        
Sbjct: 239 AKRAGIRGDCFSPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQIYTHV----LETG 294

Query: 310 MMEIYDQTHPSITQKDKK 327
           +  + ++ HP   Q   K
Sbjct: 295 LYHLVNEHHPLADQDKAK 312


>gi|220921142|ref|YP_002496443.1| tyrosine recombinase XerD [Methylobacterium nodulans ORS 2060]
 gi|219945748|gb|ACL56140.1| tyrosine recombinase XerD [Methylobacterium nodulans ORS 2060]
          Length = 308

 Score =  225 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 83/302 (27%), Positives = 133/302 (44%), Gaps = 17/302 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L  L  ERG S  TL +Y  D   +L  LA              +    IRA+++  
Sbjct: 13  QPYLDMLAAERGASANTLAAYRRDLDDYLAHLAAEG------LDPAAVEAPMIRAYMADL 66

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   S  R LS I+ F ++L             +   K+  +LP+ L+  +   L+
Sbjct: 67  DARGLKASSAARRLSCIRGFHRFLYAEGYAPTDPTAPVSGPKRGRALPKVLSVAEVDRLL 126

Query: 139 ----DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
               + V    +        R   +L LLY  GLR+SE ++L     +  +  L ++GKG
Sbjct: 127 SVAKEAVAQAPNLSEAARAQRLLCLLELLYATGLRVSELVALPRAAALTRERYLVVRGKG 186

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRRY 253
            + R+VPL  + R A+  +  +            LF        L    F R ++     
Sbjct: 187 GRERLVPLTEAARAAMAAHLTML-----AAPGPWLFPADSESGHLTRQAFARDLKLAAAA 241

Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     + H LRH+FA+HLL NG DLR +Q +LGH  +STTQIYT+V  +     + +
Sbjct: 242 AGIRADRVSPHVLRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHVLDERLKSMVRD 301

Query: 313 IY 314
           ++
Sbjct: 302 LH 303


>gi|71064781|ref|YP_263508.1| tyrosine recombinase XerC subunit [Psychrobacter arcticus 273-4]
 gi|71037766|gb|AAZ18074.1| tyrosine recombinase XerC subunit [Psychrobacter arcticus 273-4]
          Length = 345

 Score =  225 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 89/318 (27%), Positives = 147/318 (46%), Gaps = 15/318 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ELL     WL  L + R  S  TL +Y     Q  +FL           T  +    ++ 
Sbjct: 37  ELLAPVHRWLNVLSV-RNHSPHTLTAYFAGLNQLALFLRGKC------LTWTRCDKRQLA 89

Query: 73  AFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
             IS+R  + K+   S+++ LS I+ F  +L +  +   +     +  +    LP   + 
Sbjct: 90  QHISQRLDEDKLALASVQQELSAIRHFYGWLIEEDLARINPTTGYQLKRSPRPLPSIADV 149

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
                L+D  +  T  + + +  R+ A+  LLY  GLR+ E ++L   ++      +R+ 
Sbjct: 150 DLLTQLLDQEIPDTPEQAR-LWLRDKAMFELLYSSGLRVGELVALDIADVDLADLRVRVT 208

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQL 250
           GKG+K R+VPL      AI  Y       +   +   LF   + G  L+    Q+ ++  
Sbjct: 209 GKGNKTRLVPLGIKAADAIRRYLPHRNLWVE-QMDTALFISEKLGTRLSTRAVQQRLKVA 267

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+  +   H LRH FA+H+LS  GDLR++Q +LGH  +STTQIYT+V+       +
Sbjct: 268 ATRAGIAQNMYPHLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTHVDFA----KL 323

Query: 311 MEIYDQTHPSITQKDKKN 328
            ++YD+ HP  T   K +
Sbjct: 324 TQVYDRAHPRATHASKDS 341


>gi|89098652|ref|ZP_01171534.1| tyrosine recombinase [Bacillus sp. NRRL B-14911]
 gi|89086614|gb|EAR65733.1| tyrosine recombinase [Bacillus sp. NRRL B-14911]
          Length = 260

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 82/267 (30%), Positives = 138/267 (51%), Gaps = 11/267 (4%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           +  IQ++  + Y ++R ++++   QK+  +S  R +S ++SF K+L + K+  ++    +
Sbjct: 3   EQAIQSVNDVEYFDVRLYLTRLYEQKLSRKSAARKISSLRSFYKFLAREKLANDNPFSAV 62

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              K    LP    E++      N L  +      +  RN A+L LLY  G+R+SE   +
Sbjct: 63  SLPKLEKRLPEFFYEEEL-----NCLFESCETDSPLGKRNKALLELLYATGMRVSECSQI 117

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIR 234
           + ++I    ST+ + GKG K R +P     + A+  Y      +L         LF   R
Sbjct: 118 SLKDIDMALSTVLVHGKGQKDRYIPFGSFAQDALELYITEGRKELLTGRESHDRLFVNFR 177

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G PL P   +  + ++ +   L  +   H LRHSFATHLLSNG D+R++Q +LGH  LS+
Sbjct: 178 GGPLTPRGIREILNKMIQKSSLEGTIHPHMLRHSFATHLLSNGADMRTVQELLGHAFLSS 237

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           TQ+YT+V ++    ++ + Y  THP  
Sbjct: 238 TQVYTHVTNE----YLRKTYLNTHPRA 260


>gi|296273032|ref|YP_003655663.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
 gi|296097206|gb|ADG93156.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
          Length = 312

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 91/312 (29%), Positives = 145/312 (46%), Gaps = 18/312 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  +++  + + E+ L+  TL +Y  D +QF  F        I   +I  +    ++ +I
Sbjct: 5   KLLKDFFFHCQFEKNLNPKTLNAYTIDIKQFKAF------NNIETLSINDVDKDVLKEYI 58

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQA 134
               +  +  +S+KR L+ +KSF  YL+  +I   S    MR ++K+  SLP+ ++ +  
Sbjct: 59  RHLYSIDLKPKSIKRKLATLKSFFNYLEFEEIILVSPFRKMRISIKEQKSLPKTIDIRNI 118

Query: 135 LTL------VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
             L      + +    T   +     R+ AIL LL+  GLR+SE  ++   NI      +
Sbjct: 119 RKLFKYVYKIKSNNKETESFSYKTIVRDIAILELLFATGLRVSEVSNMKYSNIDLSSGNI 178

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKG+K R + +     K IL+ Y     D     +   F    G  L+       I+
Sbjct: 179 RILGKGNKERTIQICDQEVKLILKEYFSLFKDEIYKNKC-FFINRLGNKLSEQSISNMIK 237

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           + ++   +    T H  RHSFAT LL  G D+R IQ +LGH  +STTQIYT +N K    
Sbjct: 238 KYQKNANVGQHLTPHMFRHSFATMLLEEGVDIRYIQGMLGHSSISTTQIYTQINMKQQ-- 295

Query: 309 WMMEIYDQTHPS 320
              +I    HP 
Sbjct: 296 --KKILSTKHPR 305


>gi|110639767|ref|YP_679977.1| integrase [Cytophaga hutchinsonii ATCC 33406]
 gi|110282448|gb|ABG60634.1| integrase [Cytophaga hutchinsonii ATCC 33406]
          Length = 293

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 89/301 (29%), Positives = 146/301 (48%), Gaps = 12/301 (3%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L  E+  SK T  SY+ D      +L    E    + T    +Y  +R++I    
Sbjct: 4   EFLTYLSFEKRYSKHTTVSYKNDLSNLSDYLLITYE----LSTPEHANYPMLRSWIVTLV 59

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q++  +S+ R ++ ++S+  +L+K++  T+   L +R LK   SLP  + E+    L+D
Sbjct: 60  DQELEPKSINRKIACLRSYYHFLQKKEFITKDPTLKIRALKVKKSLPVFVAEENITDLLD 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                 S E      R+  +L LLYG G+R+SE + L   ++   Q T+++ GKG+K RI
Sbjct: 120 KFEFADSFE----GLRDKLVLELLYGTGIRLSELIGLKNADVNMFQKTIKVLGKGNKERI 175

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +P+  +       Y      +   N          G+ + P    R +R     +     
Sbjct: 176 IPIHDTFITLAKAYTIKKKSESFSNNTEFFVVTNNGEQVYPMFIYRLVRMYLDQVTTVDK 235

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + H LRH+FATHLL+ G DL +I+ +LGH  L+ TQ+YT+    N  D +  I+DQ HP
Sbjct: 236 RSPHVLRHTFATHLLNKGADLNAIKDLLGHTSLAATQVYTH----NSIDKLKAIFDQAHP 291

Query: 320 S 320
            
Sbjct: 292 K 292


>gi|325285449|ref|YP_004261239.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489]
 gi|324320903|gb|ADY28368.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489]
          Length = 296

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 76/306 (24%), Positives = 147/306 (48%), Gaps = 12/306 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + ++  L +E+  S  T+ +Y+ D  +F  F     +    + +I  + Y  +R +I  
Sbjct: 3   LEAFVSYLSLEKKYSTHTVTAYKKDISEFTEFCGVNYQ----LTSIDDVPYAFVRNWIVV 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             +++I +RS+ R ++ +K++ K+L+K      + +   + LK S  +    + ++    
Sbjct: 59  LVSKEISNRSINRKIASLKAYYKFLQKIGRVVVNPLAKHKALKISKKIEIPFSFEEVEAA 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++ V      E      R+  I+ LLY  G+R  E ++L  +N+     T+++ GK +K 
Sbjct: 119 LNEVDFEAGFE----GERDRLIIGLLYATGVRRIELVNLKLKNVDVKAKTIKVLGKRNKE 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VPL P V   +  Y +       +N +   F    G  +   +  R I +    +   
Sbjct: 175 RVVPLAPFVCPWVYSYLENREALPVINDEAYFFLLKSGDKVYESLVYRIINRYFSKVSSK 234

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FATHLL+ G DL S++ +LGH  L++TQ+YT+    N    + +++   
Sbjct: 235 QKNSPHILRHTFATHLLNEGADLNSVKELLGHSSLASTQVYTH----NSIAELKKVHLAA 290

Query: 318 HPSITQ 323
           HP   +
Sbjct: 291 HPRNKK 296


>gi|299137336|ref|ZP_07030518.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
 gi|298600741|gb|EFI56897.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
          Length = 320

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 28/335 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+  N  E+         +++L  +  ERG S+ TL++Y  + R F  FL     E    
Sbjct: 1   MKRRNFHELA--------ESFLAMMRDERGASEHTLRAYSREVRGFADFLGELLGEDA-- 50

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             IR + +T IRA+++    + +   S  R+L+ ++S+ K+L K      +    +   K
Sbjct: 51  -DIRSVEHTHIRAYLAVLYDKGLTKASAARALAAVRSWFKWLAKSGFVEANPASLVSTPK 109

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSL 176
               LPR    ++   +++++   T  E     A    R+  I  LLYGCG+R SE + L
Sbjct: 110 LPKHLPRVPGMEELNRVLNSMSAGTKGEDGEEAATWPERDRVIFELLYGCGIRNSELVGL 169

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL------- 229
             ++I      +R+ GKG K R+VPL      AI  Y       L    +  L       
Sbjct: 170 NLESIHWHDDAIRVFGKGKKERLVPLGDEAAAAIRAYLPQRQARLEAAGKAKLVHDGALL 229

Query: 230 --FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
              R      L      R ++++    GL      HTLRH+F TH+L  G DLR+IQ +L
Sbjct: 230 MNLRMRGACRLTTRSVGRIVKRIALSRGLAADVHPHTLRHAFGTHMLEEGADLRAIQEML 289

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           GH RLSTTQ YT +        +  +Y++THP   
Sbjct: 290 GHERLSTTQRYTQLT----VGQVQRVYEETHPRAR 320


>gi|269213994|ref|ZP_05983350.2| tyrosine recombinase XerD [Neisseria cinerea ATCC 14685]
 gi|269144753|gb|EEZ71171.1| tyrosine recombinase XerD [Neisseria cinerea ATCC 14685]
          Length = 308

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 143/296 (48%), Gaps = 16/296 (5%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L ++R LS+ TL+SY  D  +    L+         QT+R    +++ A +     +
Sbjct: 27  LETLWLDRRLSRNTLESYRRDLEKIARRLSLCG------QTLRDADESDLAAAVYVAGEE 80

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
           +    S  R+LS  K    ++++  + T++    ++  K   ++P  + E+Q   L+   
Sbjct: 81  R---SSQARALSACKRLYIWMEREGMRTDNPTRLLKPPKIDKNIPTLITEQQISRLL--- 134

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
                        R+ A+L L+Y  GLR+SEA+ L+  N+  D+  +   GKG+K RIVP
Sbjct: 135 --SAPDTDTPHGLRDKALLELMYATGLRVSEAVRLSFGNLDLDRGCITTLGKGNKQRIVP 192

Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +       +  YY    P  L       LF   +   ++  +    +++     G+    
Sbjct: 193 MGRESVYWVERYYKEARPLLLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIE-HI 251

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           + H+LRH+FATHL+ +G DLR +Q +LGH  L+TTQIYT+V +      + E + +
Sbjct: 252 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVRLHSVVKEHHSR 307


>gi|88608752|ref|YP_506043.1| tyrosine recombinase XerD [Neorickettsia sennetsu str. Miyayama]
 gi|88600921|gb|ABD46389.1| tyrosine recombinase XerD [Neorickettsia sennetsu str. Miyayama]
          Length = 305

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 78/315 (24%), Positives = 154/315 (48%), Gaps = 28/315 (8%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  + +L+ + +ER  +  T+ SY  D R    FL            ++  S   +  +I
Sbjct: 7   KYVEQFLEKILVERNATLNTISSYRTDLRLLSTFLKKRG--------LKDASKENLYEYI 58

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +  R Q++ + +++R ++  + F  +L   KI++ +   ++   KK+  LPR L +++  
Sbjct: 59  ANLRAQQLSNATIRRKIATFRQFFSFLYSEKISSTNPAQSLELPKKTLVLPRYLTKEEVF 118

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQG 192
           +L+  +        +       AIL +LY  G+R+SE +++   +I   ++ Q  + I G
Sbjct: 119 SLLTFLEAGQPATLRL-----YAILEILYSSGMRVSELINMKVSDIRPLLNGQQHIIIVG 173

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG--IRGKPLNPGVFQRYIRQL 250
           KG K RI+P      + +  Y          +    LF G   + +P++     + +++L
Sbjct: 174 KGRKERILPFSKKAIQVLKLYLTSYQ-----SNSPWLFPGAGRKDRPMSRQRLGQLLKEL 228

Query: 251 RRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                + P   + H +RHSFATHLL NG D++ +Q +LGH +++TTQIYT+++       
Sbjct: 229 ALKCKIDPKRISPHVIRHSFATHLLDNGMDIKVVQDLLGHAQITTTQIYTHISQ----HK 284

Query: 310 MMEIYDQTHPSITQK 324
           + +  +  HP  +++
Sbjct: 285 LHKEIEAKHPLSSKE 299


>gi|114327281|ref|YP_744438.1| integrase/recombinase xerD [Granulibacter bethesdensis CGDNIH1]
 gi|114315455|gb|ABI61515.1| integrase/recombinase xerD [Granulibacter bethesdensis CGDNIH1]
          Length = 290

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 81/308 (26%), Positives = 143/308 (46%), Gaps = 27/308 (8%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +  +++L+ L  ERG ++ TL +Y  D R +  + A +  + +            +R 
Sbjct: 1   MERHIESFLEMLAAERGAARNTLLAYGTDLRDWSGYAARHRVDPL------HADEAALRG 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++ +     G R+  R LS ++ F ++L ++   ++     +   K   SLP+ L+E +
Sbjct: 55  YLAAQSGAGNGPRTQSRRLSALRQFYRFLLEQGTRSDDPTALLDAPKLPRSLPKYLDEAE 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+       +             L +LY  GLR+SE L+L  +    D   + ++GK
Sbjct: 115 VDALLQAAPAEPAAHAA---------LEILYSTGLRVSEVLALPARAFRGDAPMMTVRGK 165

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRR 252
           G + R+VP+  +          +            LF G    KP+    F   ++++  
Sbjct: 166 GGRERMVPVSAAAI------SAVAAMRSGAEQSRWLFPGRDPAKPMTRQGFALMLKRVAL 219

Query: 253 YLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             GL P   + H LRH FA+HLL+ G DLRS+Q +LGH  ++TTQIYT+V S+     + 
Sbjct: 220 QAGLDPARVSPHVLRHCFASHLLARGADLRSLQMLLGHVDIATTQIYTHVLSER----LR 275

Query: 312 EIYDQTHP 319
            + D  HP
Sbjct: 276 ALLDTCHP 283


>gi|294787717|ref|ZP_06752961.1| tyrosine recombinase XerD [Simonsiella muelleri ATCC 29453]
 gi|294484010|gb|EFG31693.1| tyrosine recombinase XerD [Simonsiella muelleri ATCC 29453]
          Length = 290

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 86/309 (27%), Positives = 146/309 (47%), Gaps = 20/309 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +++     L++L ++  L+  TL++Y  D  +    L     +  T   +   S      
Sbjct: 1   MIELIDKLLEHLWLQERLAHNTLEAYRRDLSKLAQRLDTQHADFWTADAVALASAI---- 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++S  +      RS  RSLS  K    +L +     +    +++  K  ++LP+ + E+Q
Sbjct: 57  YVSDEQ-----PRSQARSLSACKRLYAWLVETGQREDDPTRDLKATKLPHTLPKIITEQQ 111

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++     T H       R+ A+L L+Y  GLR++EA+ L    I  +   +   GK
Sbjct: 112 IENLLNMPDCDTPH-----GLRDKALLELMYATGLRVTEAVKLRMNEINLNHGLVNTIGK 166

Query: 194 GDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           GDK RIVPL       I +Y     P  L       LF   +   +   +    ++Q   
Sbjct: 167 GDKQRIVPLGEEAVHWIGQYVQFSRPQLLKGRRCDELFVSQKKSGMTRQLAWLIVKQYAD 226

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            +G+  S + H+LRH+FATHL+++G DLR++Q +LGH  ++TTQIYT+V ++     +  
Sbjct: 227 LVGI-KSLSPHSLRHAFATHLVNHGADLRTVQMLLGHADIATTQIYTHVANER----LKS 281

Query: 313 IYDQTHPSI 321
           I  Q HP  
Sbjct: 282 IVQQHHPRA 290


>gi|115380783|ref|ZP_01467658.1| integrase [Stigmatella aurantiaca DW4/3-1]
 gi|115362213|gb|EAU61573.1| integrase [Stigmatella aurantiaca DW4/3-1]
          Length = 253

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 73/247 (29%), Positives = 115/247 (46%), Gaps = 10/247 (4%)

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           +   + +  RS  R L+ ++ F ++L   K   +    ++   + +  LP  L  ++   
Sbjct: 2   QLGARGLSKRSQARHLAAVRGFHRFLIAEKHAEKDPTEDLDTPRSARKLPSFLTLEEVEQ 61

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+         E      R+ A+L LLY  GLR+SE  SL   ++      L  +GKG K
Sbjct: 62  LL-----AAPDERHPTGMRDKAMLELLYATGLRVSELCSLGINDVQLGAGYLVAKGKGSK 116

Query: 197 IRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R+VP+     + +  Y        L       LF   RG       F + +++     G
Sbjct: 117 ERVVPVGSVAVEKVQAYLGGPRQHLLGKRQSRSLFITPRGGAFTRQGFWKLLKRYALKAG 176

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + H LRHSFATHL+  G DLR++Q++LGH  L+TTQIYT+VNS      +  +YD
Sbjct: 177 IRKPISPHKLRHSFATHLVERGADLRAVQAMLGHADLATTQIYTHVNSAR----LRAVYD 232

Query: 316 QTHPSIT 322
           + HP   
Sbjct: 233 EHHPRSE 239


>gi|329118159|ref|ZP_08246871.1| site-specific tyrosine recombinase XerC [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327465819|gb|EGF12092.1| site-specific tyrosine recombinase XerC [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 308

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 87/318 (27%), Positives = 141/318 (44%), Gaps = 22/318 (6%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
            +   E       +L+ L  E G S  TL +   D  Q    L  + E          LS
Sbjct: 13  AMTPAEFTARSAEYLETLRSE-GRSPHTLAACRRDLAQLAKLLPEHAE---------PLS 62

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
             +  A + K       +RS+ R LS  + +  YL +  +   +    ++  K    LP+
Sbjct: 63  RHDFAAALKKLSQSGASERSMARKLSVWRRYADYLVRHGLLDANPAGRLKAPKLPQLLPK 122

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           A++ +    L D      +     +DAR+ A+  LLYG GLR++EA +L   +++ ++  
Sbjct: 123 AVDAEPLNALFDR-----AACDDALDARDLALFELLYGSGLRVAEAQALDVADVLIEEGW 177

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           + ++GKG K R VPL       +  Y            +  LF    G+ L     Q  +
Sbjct: 178 VGVRGKGGKHRQVPLTGQCATVLAAYLPQR---AAAAGETALFTNRLGRRLGIRQMQNRL 234

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           R      G P   + H LRHS+A+HLL +G  +R+IQ +LGH  L+ TQIYT ++     
Sbjct: 235 RLWAVKNGSPQHISPHMLRHSYASHLLQSGAGIRAIQELLGHSDLAATQIYTKLDFAR-- 292

Query: 308 DWMMEIYDQTHPSITQKD 325
             + E+YD+ HP   ++ 
Sbjct: 293 --LAEVYDRAHPRAKRQK 308


>gi|326562807|gb|EGE13102.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 46P47B1]
 gi|326563212|gb|EGE13480.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 12P80B1]
 gi|326563472|gb|EGE13735.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 103P14B1]
 gi|326573782|gb|EGE23739.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 101P30B1]
          Length = 330

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 87/309 (28%), Positives = 141/309 (45%), Gaps = 8/309 (2%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +W   L ++   SK T+ +Y+    QF  FL             R+   T  R F ++  
Sbjct: 29  SWCDELRLQ-NYSKHTITTYQTALIQFFNFLESDNYLGGDPLACRRQDLT--RFFSTRLE 85

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +KI   S K SLS I+ F ++L K+ +   +     +       LP   +E     L+D
Sbjct: 86  EEKIKPISAKLSLSAIRIFYQFLIKQGVIAVNPTTGYKIKSAPRKLPTVADELLIKQLLD 145

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                 + +  ++  R+ A+  L+Y  GLR+SE   L   ++  D   +R+ GKG+K R 
Sbjct: 146 QKTPEDTAKA-YLWIRDKAMFELMYSSGLRLSELAGLNMGDVNFDIGIVRVLGKGNKTRQ 204

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VP+      A+ +Y          N +        G  L+    Q  ++      G+ L+
Sbjct: 205 VPVGKKAMIALQDYLPHRNLWQKKNCKALFISERHGTRLSTRAIQLRLKVCATMAGIELN 264

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRH FA+H+LS+ GDLR+IQ +LGH  +STTQIYT+V+       + ++YD  HP
Sbjct: 265 MYPHLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHVDF----GALTKVYDHAHP 320

Query: 320 SITQKDKKN 328
              +    +
Sbjct: 321 RAYRTKNNH 329


>gi|305681404|ref|ZP_07404211.1| site-specific tyrosine recombinase XerC [Corynebacterium
           matruchotii ATCC 14266]
 gi|305659609|gb|EFM49109.1| site-specific tyrosine recombinase XerC [Corynebacterium
           matruchotii ATCC 14266]
          Length = 331

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 81/316 (25%), Positives = 143/316 (45%), Gaps = 22/316 (6%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + S +L +   ++ ++L +  G S  T+  Y  D   F               T    + 
Sbjct: 35  VASTQLQEAIADFAEHLHLVVGRSPATVAGYRSDLIDFCRH----------AHTFEDFTL 84

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +RA++           ++ R  +  +SF  + +++     +    +   K   SLP  
Sbjct: 85  VNLRAWLGAAVDAGKSRATIARRAAAARSFSSWCERQGYLDTNVAARLAVPKSGRSLPTV 144

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           +    A TL+    + +   T+    R++A+L LLY  G+R+SE   +   ++   ++T+
Sbjct: 145 VTPTAAETLM----VSSQATTEPEYLRDTAMLELLYATGIRVSELCGIDLADVNYSRNTV 200

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQR 245
           ++ GKG+K R+VP       A+  + D     L          LF G RG  ++P + + 
Sbjct: 201 KVTGKGNKQRVVPFGDPAASALKAWRDHGRPHLLNPKKPAHNALFLGARGGRIDPRMVRT 260

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            + +    LG+      H+LRHS ATH+L  G DLR +Q +LGH  L TTQIYT+V++  
Sbjct: 261 VVARAGEQLGVD-GLGPHSLRHSAATHMLDGGADLRVVQELLGHSSLQTTQIYTHVSTTR 319

Query: 306 GGDWMMEIYDQTHPSI 321
               + + Y+Q HP  
Sbjct: 320 ----LKQAYNQAHPRA 331


>gi|326571339|gb|EGE21356.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis BC8]
          Length = 331

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 140/304 (46%), Gaps = 8/304 (2%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +W   L ++   SK T+ +Y+    QF  FL             R+   T  R F ++  
Sbjct: 29  SWCDELRLQ-NYSKHTITTYQTALIQFFNFLESDNYLGGDPLACRRQDLT--RFFSTRLE 85

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +KI   S K SLS I+ F ++L K+ +   +     +       LP   +E     L+D
Sbjct: 86  EEKIKPISAKLSLSAIRIFYQFLIKQGVIAVNPTTGYKIKSAPRKLPTVADELLIKQLLD 145

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                 + +  ++  R+ A+  L+Y  GLR+SE   L   ++  D   +R+ GKG+K R 
Sbjct: 146 QKTPEDTAKA-YLWIRDKAMFELMYSSGLRLSELAGLNMGDVNFDTGIVRVLGKGNKTRQ 204

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VP+      A+ +Y          N +        G  L+    Q  ++      G+ L+
Sbjct: 205 VPVGKKAMIALQDYLPHRNLWQKKNCKALFISERHGTRLSTRAIQLRLKVCATMAGIELN 264

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRH FA+H+LS+ GDLR+IQ +LGH  +STTQIYT+V+       + ++YD  HP
Sbjct: 265 MYPHLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHVDF----GALTKVYDHAHP 320

Query: 320 SITQ 323
              +
Sbjct: 321 RAYR 324


>gi|288574964|ref|ZP_06393321.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570705|gb|EFC92262.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 297

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 75/303 (24%), Positives = 144/303 (47%), Gaps = 16/303 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L +E G S+ T ++Y  D  Q+  F +    + +   +           ++   R
Sbjct: 10  QFLSYLSLELGESQNTCKAYRVDISQWNDFCSRSGRDPVASDS------DLYGKYVHYMR 63

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           +  +   +++R  + +++++ +L      ++   +      +   LP+ L E +   L+ 
Sbjct: 64  SIDLAPATIQRKCAAVRTWINFLVVEGYVSDDVPMP-PLPDRPKRLPQLLTEGEVSRLLG 122

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                      ++D R+ AIL  LYGCGLR SE  SL  +++  +++++ I GKG+K R+
Sbjct: 123 ACD---GDPMGYLDFRDRAILETLYGCGLRASELCSLKLRDLQFERASMIIFGKGNKERM 179

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL- 258
           VPL+ S R+ I  + D     +       +F    G+P+      + IR+     G+   
Sbjct: 180 VPLVGSARRWIERFIDEARPSVAKEGVDQVFLSRNGRPMRRESLWKMIRKRGSRAGISQS 239

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H +RH+ A+HLL  G DLR++Q  LGH  + TT+ Y + + +     + ++YD++H
Sbjct: 240 RLHPHVIRHTVASHLLRRGMDLRTLQEFLGHESIGTTEKYLHFDQE-----LRDVYDRSH 294

Query: 319 PSI 321
           P  
Sbjct: 295 PRA 297


>gi|93005052|ref|YP_579489.1| phage integrase [Psychrobacter cryohalolentis K5]
 gi|92392730|gb|ABE74005.1| tyrosine recombinase XerC subunit [Psychrobacter cryohalolentis K5]
          Length = 349

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 88/317 (27%), Positives = 144/317 (45%), Gaps = 13/317 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ELL     WL  L + R  S  TL +Y     Q  +FL           T  +    ++ 
Sbjct: 41  ELLAPVHRWLNVLSV-RNHSPHTLTAYFAGLNQLALFLRGKR------LTWTRCDKRQLA 93

Query: 73  AFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
             IS+R  + K+   S+++ LS I+ F  +L +  +   +     +  +    LP   + 
Sbjct: 94  QHISQRLDEDKLSLASVQQELSAIRHFYGWLIEEDLARINPTTGYQLKRSPRPLPSIADV 153

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
                L+D  +  T  + + +  R+ A+  LLY  GLR+ E ++L   ++      +R+ 
Sbjct: 154 DLLTQLLDQEIPDTPEQAR-LWLRDKAMFELLYSSGLRVGELVALDIVDVDLADLRVRVT 212

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG+K R+VPL      AI  Y       +    Q        G  L+    Q+ ++   
Sbjct: 213 GKGNKTRLVPLGIKAADAIRRYLPHRNLWVEQMDQALFISEKLGTRLSTRAVQQRLKVAA 272

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+  +   H LRH FA+H+LS  GDLR++Q +LGH  +STTQIYT+V+       + 
Sbjct: 273 TRAGIAQNMYPHLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTHVDFA----KLT 328

Query: 312 EIYDQTHPSITQKDKKN 328
           ++YD+ HP  T   K +
Sbjct: 329 QVYDRAHPRATHVSKDS 345


>gi|148285154|ref|YP_001249244.1| site-specific tyrosine recombinase XerC [Orientia tsutsugamushi
           str. Boryong]
 gi|146740593|emb|CAM81243.1| tyrosine recombinase XerC [Orientia tsutsugamushi str. Boryong]
          Length = 312

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 124/319 (38%), Positives = 190/319 (59%), Gaps = 11/319 (3%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQTIRQLSY 68
           ++ +L K    WL +L+  +  S  T  SY  D +QFL F+  Y    ++    +  +  
Sbjct: 3   LNSQLEKIITEWLNHLKNYKNYSINTCNSYNNDLQQFLNFIVDYCNLSELKTSHLCSVDI 62

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R+++S+R   +    S  R+LS +++F KYL K+       I  +R+ K +  LP+A
Sbjct: 63  RLMRSWLSQRYNLQYNSSSNSRALSSVRNFYKYLFKQHNLVNKIISAVRSPKLAKRLPKA 122

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+ +  +       ++     KWI AR+ A+L+LLYG GLRISEALS+T   +     +L
Sbjct: 123 LDIEDTVA--CTTEINNIANDKWIGARDKALLFLLYGQGLRISEALSVTK--VSLKSESL 178

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            I+GKG+KIR++P L   ++ + +Y +L P+ L  N   PLF G RGK L P VF R++ 
Sbjct: 179 IIKGKGNKIRLIPWLDITKQLVSDYVNLVPYSLTENS--PLFVGKRGKKLQPAVFGRHLI 236

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +LRR L LP S T HT RH FA+HLL+NG DLRSIQ +LGH  LS+TQIYT +NS    D
Sbjct: 237 KLRRQLNLPESLTPHTFRHCFASHLLNNGADLRSIQELLGHQSLSSTQIYTKINS----D 292

Query: 309 WMMEIYDQTHPSITQKDKK 327
           ++  +Y+++HP + +++ K
Sbjct: 293 FLTSVYNKSHPLVREQNNK 311


>gi|315606523|ref|ZP_07881538.1| tyrosine recombinase XerC [Prevotella buccae ATCC 33574]
 gi|315251929|gb|EFU31903.1| tyrosine recombinase XerC [Prevotella buccae ATCC 33574]
          Length = 293

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 75/304 (24%), Positives = 134/304 (44%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L+ E   S+ T++SY  D R F  F            +   +    IR ++  
Sbjct: 3   IEKFLNYLKFELNRSERTVKSYGEDLRAFEEFFKNLDGHP----SWESVDSDIIRDWMES 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S+ R LS ++SF ++   R++  +    ++   KK   LP+ L E +   L
Sbjct: 59  MMDKGNNATSINRRLSALRSFYRFALARELVVKDPAHDVVGPKKKKPLPQFLKENEINAL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D+ +     E  + D R   I+   Y  G+R+SE   L   ++      L++ GK +K 
Sbjct: 119 LDSDM----WEDTYDDMRARTIVMTFYETGMRLSELTGLRDADVDFVNHELKVTGKRNKQ 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RI+P    + + + +Y  L       N     F   +G  +     +  +++    +   
Sbjct: 175 RIIPFGAELAQTLADYKSLRDATERGNCGK-FFLTDKGLAMQNAQVREIVKKHLSRVCTL 233

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T H LRH+FAT +L++   L S++ +LGH RLSTT+IYT+   +     +  +Y   
Sbjct: 234 KKRTPHVLRHTFATAMLNHEAGLESLKRLLGHARLSTTEIYTHTTFEQ----LKRVYTNA 289

Query: 318 HPSI 321
           HP  
Sbjct: 290 HPRA 293


>gi|126729514|ref|ZP_01745327.1| tyrosine recombinase XerD [Sagittula stellata E-37]
 gi|126709633|gb|EBA08686.1| tyrosine recombinase XerD [Sagittula stellata E-37]
          Length = 311

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 83/298 (27%), Positives = 139/298 (46%), Gaps = 21/298 (7%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
            TL +Y+ D      +L  +  +  T Q        ++ +++    T  +   +  R LS
Sbjct: 25  NTLAAYQRDLTHVADWLTDHALDFATAQ------KKDVESYLIDCDTLGLSRATRARRLS 78

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            IK   ++  +  +  ++  + +    +   LP+ L+ +Q   L+D    H   E     
Sbjct: 79  AIKQIYRFAFEEGLREDNPAVQIAGPGREKRLPKTLSVEQVDRLLDAAANHGRTEADR-- 136

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
           ARN+ ++ +LY  G+R++E +SL       D   L I+GKG K R+VPL P  R+A+  +
Sbjct: 137 ARNACLMQVLYATGMRVTELVSLPVSAARGDPRMLLIRGKGGKERMVPLSPPAREALTAW 196

Query: 214 YDLCPFDLNLN-------IQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLGLPL-STTAHT 264
                   +             LF    +   L    F   I++     G+P    T HT
Sbjct: 197 LSARDAAASEAQAATGAVPSPFLFPSHGKAGHLTRHAFYMLIKEFALEAGVPPSEVTPHT 256

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           LRH+FATHLL+NG DLR+IQ++LGH  ++TT+IYT+V  +   D +++     HP   
Sbjct: 257 LRHAFATHLLANGADLRAIQTLLGHADVATTEIYTHVLEERLRDLVLD----HHPLAK 310


>gi|15842437|ref|NP_337474.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           CDC1551]
 gi|13882740|gb|AAK47288.1| tyrosine recombinase XerC [Mycobacterium tuberculosis CDC1551]
          Length = 315

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 79/305 (25%), Positives = 133/305 (43%), Gaps = 12/305 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              + + L ++ G S  T ++Y  D R    FLA          ++  L+ + +R++++ 
Sbjct: 22  LDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRG------SSLDALTLSVLRSWLAA 75

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    +L R  S +K+F  +  +R +        ++  K   +LP  L + QAL  
Sbjct: 76  TAGAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRA 135

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +       + +   +  R+  I+ LLY  G+R+SE   L   +I      +R+ GKG+K 
Sbjct: 136 M-AAAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQ 194

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R VP       A+  +       L        L  G RG+ L+    +  + Q    +  
Sbjct: 195 RTVPFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDG 254

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V        +  ++++
Sbjct: 255 APDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVAR----LRAVHER 310

Query: 317 THPSI 321
            HP  
Sbjct: 311 AHPRA 315


>gi|319404882|emb|CBI78483.1| integrase/recombinase XerD [Bartonella rochalimae ATCC BAA-1498]
          Length = 307

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 79/313 (25%), Positives = 144/313 (46%), Gaps = 20/313 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS--YTEIRAFI 75
              +L+ +  ERG S  TL +Y+ D +        + + K++  +I   S    ++   +
Sbjct: 7   IDRFLEMMSAERGASVCTLLAYQHDLQ--------WAQNKLSSHSISFFSAQREDLINLL 58

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           S  +       S  R LS ++ F ++L    +  +    ++ + ++   LP+ ++E    
Sbjct: 59  SLMQKAGCAATSQARRLSTLRQFFQFLYAEGLREDDPSSDIDSPRQGRPLPKIISEDAMA 118

Query: 136 TLVDNVLLHTSHETKWIDARNSAI-----LYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            L+D   L T            A+     L +LY  GLRISE +SL  Q +   +  + +
Sbjct: 119 KLLDFAQLETEQAESGTQNYYRALRFQVLLEMLYATGLRISELVSLPVQAVRGKEQFILV 178

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +GKG+K R+V L    R+ +L++  +     +               +      R ++ L
Sbjct: 179 RGKGEKERVVLLSEKARQILLQWLSVRDQRKDATSIYLFPARSSTGYIARQFVARGLKDL 238

Query: 251 RRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            +  G+   + + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V        
Sbjct: 239 AKRAGIQSENFSPHVLRHAFASHLLQNGADLRAVQHLLGHRDISTTQIYTHVLEAR---- 294

Query: 310 MMEIYDQTHPSIT 322
           +  + ++ HP + 
Sbjct: 295 LHRLVNEHHPLVD 307


>gi|296113698|ref|YP_003627636.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis RH4]
 gi|295921392|gb|ADG61743.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis RH4]
 gi|326562438|gb|EGE12757.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 7169]
 gi|326569146|gb|EGE19208.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis BC1]
          Length = 330

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 87/309 (28%), Positives = 140/309 (45%), Gaps = 8/309 (2%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +W   L ++   SK T+ +Y+    QF  FL             R+   T  R F ++  
Sbjct: 29  SWCDELRLQ-NYSKHTITTYQTALIQFFNFLESDNYLGGDPLACRRQDLT--RFFSTRLE 85

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +KI   S K SLS I+ F ++L K+ +   +     +       LP   +E     L+D
Sbjct: 86  EEKIKPISAKLSLSAIRIFYQFLIKQGVIAVNPTTGYKIKSAPRKLPTVADELLIKQLLD 145

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                 + +   +  R+ A+  L+Y  GLR+SE   L   ++  D   +R+ GKG+K R 
Sbjct: 146 QKTPEDTAKA-CLWIRDKAMFELMYSSGLRLSELAGLNMGDVNFDIGIVRVLGKGNKTRQ 204

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VP+      A+ +Y          N +        G  L+    Q  ++      G+ L+
Sbjct: 205 VPVGKKAMIALQDYLPHRNLWQKKNCKALFISERHGTRLSTRAIQLRLKVCATMAGIELN 264

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRH FA+H+LS+ GDLR+IQ +LGH  +STTQIYT+V+       + ++YD  HP
Sbjct: 265 MYPHLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHVDF----GTLTKVYDHAHP 320

Query: 320 SITQKDKKN 328
              +    +
Sbjct: 321 RAYRTKNNH 329


>gi|254718076|ref|ZP_05179887.1| site-specific tyrosine recombinase XerD [Brucella sp. 83/13]
 gi|306837278|ref|ZP_07470164.1| tyrosine recombinase XerD [Brucella sp. NF 2653]
 gi|306407650|gb|EFM63843.1| tyrosine recombinase XerD [Brucella sp. NF 2653]
          Length = 307

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 90/312 (28%), Positives = 139/312 (44%), Gaps = 16/312 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             +N+L+ +  ERG ++ TL+SY  D       LA           + +     IR  + 
Sbjct: 6   AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKG------VNLAEAETGHIRMTLD 59

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               Q     S  R LS ++ F ++L       +     +   KK   LP+ ++ +    
Sbjct: 60  TMAAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGK 119

Query: 137 LVDNVLLHTSHETKW----IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           L+D   L  +   +        R  A+L  LY  GLR+SE + L       D   L ++G
Sbjct: 120 LLDRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRG 179

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLR 251
           KG K R+VPL    R+A+ ++  L       +    LF        L   VF R ++ L 
Sbjct: 180 KGSKDRMVPLSRKAREALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLA 239

Query: 252 RYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              GL  S  + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V  +     +
Sbjct: 240 ARAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER----L 295

Query: 311 MEIYDQTHPSIT 322
            ++  + HP   
Sbjct: 296 HKLVSEHHPLAD 307


>gi|265983027|ref|ZP_06095762.1| tyrosine recombinase xerD [Brucella sp. 83/13]
 gi|264661619|gb|EEZ31880.1| tyrosine recombinase xerD [Brucella sp. 83/13]
          Length = 309

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 90/312 (28%), Positives = 139/312 (44%), Gaps = 16/312 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             +N+L+ +  ERG ++ TL+SY  D       LA           + +     IR  + 
Sbjct: 8   AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKG------VNLAEAETGHIRMTLD 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               Q     S  R LS ++ F ++L       +     +   KK   LP+ ++ +    
Sbjct: 62  TMAAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGK 121

Query: 137 LVDNVLLHTSHETKW----IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           L+D   L  +   +        R  A+L  LY  GLR+SE + L       D   L ++G
Sbjct: 122 LLDRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRG 181

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLR 251
           KG K R+VPL    R+A+ ++  L       +    LF        L   VF R ++ L 
Sbjct: 182 KGSKDRMVPLSRKAREALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLA 241

Query: 252 RYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              GL  S  + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V  +     +
Sbjct: 242 ARAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER----L 297

Query: 311 MEIYDQTHPSIT 322
            ++  + HP   
Sbjct: 298 HKLVSEHHPLAD 309


>gi|206602847|gb|EDZ39328.1| Putative phage integrase family protein [Leptospirillum sp. Group
           II '5-way CG']
          Length = 314

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 84/310 (27%), Positives = 139/310 (44%), Gaps = 19/310 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              + ++L +  G S  T Q+Y  D      FL  +        ++   S  ++  + ++
Sbjct: 9   LDAFEEDLRVASGRSPHTTQAYLLDLFALARFLGEHG------LSLLDFSPEDVTRYFTR 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R    +  RS  R LS I+S+ ++LK+R + +      +   +   +LP  L+E++ L L
Sbjct: 63  RED--LAMRSRSRVLSAIRSWSRFLKRRGLPSIDP-DTLPVPRLPRNLPGVLDEEEILRL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++               R+ AIL   Y  GLR+SE   LT   +   +  +R+ GKG K 
Sbjct: 120 LE-----APDPKTDEGIRDRAILATFYASGLRVSELAELTLDRLNLKEEQIRVTGKGQKE 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+  L       +  Y               LF   R            I+   +  G+ 
Sbjct: 175 RVAFLDGVSCARLRLYL-ERVRPSTSTSDKTLFLTRRQTGFTRQGLWLLIKGYAKQCGID 233

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + + HTLRHSFATHLLS+G D+RSIQ +LGH  + TT+IYT+V+ +   + +     + 
Sbjct: 234 RNVSPHTLRHSFATHLLSHGMDIRSIQILLGHSDIQTTEIYTHVDIRMLAEDLA----RY 289

Query: 318 HPSITQKDKK 327
           HP   Q D++
Sbjct: 290 HPRGKQPDRE 299


>gi|254713562|ref|ZP_05175373.1| site-specific tyrosine recombinase XerD [Brucella ceti M644/93/1]
 gi|254716083|ref|ZP_05177894.1| site-specific tyrosine recombinase XerD [Brucella ceti M13/05/1]
          Length = 307

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 90/312 (28%), Positives = 138/312 (44%), Gaps = 16/312 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             +N+L+ +  ERG ++ TL+SY  D       LA           + +     IR  + 
Sbjct: 6   AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKG------VNLAEAETGHIRMTLD 59

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               Q     S  R LS ++ F ++L       +     +   KK   LP+ ++ +    
Sbjct: 60  TMAAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGFLDAPKKQKPLPKIMSVENVGK 119

Query: 137 LVDNVLLHTSHETKW----IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           L+D   L  +   +        R  A+L  LY  GLR+SE + L       D   L ++G
Sbjct: 120 LLDRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRG 179

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLR 251
           KG K R+VPL    R A+ ++  L       +    LF        L   VF R ++ L 
Sbjct: 180 KGSKDRMVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLA 239

Query: 252 RYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              GL  S  + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V  +     +
Sbjct: 240 ARAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER----L 295

Query: 311 MEIYDQTHPSIT 322
            ++  + HP   
Sbjct: 296 HKLVSEHHPLAD 307


>gi|326572966|gb|EGE22945.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis CO72]
          Length = 331

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 140/304 (46%), Gaps = 8/304 (2%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +W   L ++   SK T+ +Y+    QF  FL             R+   T  R F ++  
Sbjct: 29  SWCDELRLQ-NYSKHTITTYQTALIQFFNFLESDNYLGGDPLACRRQDLT--RFFSTRLE 85

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +KI   S K SLS I+ F ++L K+ +   +     +       LP   +E     L+D
Sbjct: 86  EEKIKPISAKLSLSAIRIFYQFLIKQGVIAVNPTTGYKIKSAPRKLPTVADELLIKQLLD 145

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                 + +  ++  R+ A+  L+Y  GLR+SE   L   ++  D   +R+ GKG+K R 
Sbjct: 146 QKTPEDTAKA-YLWIRDKAMFELMYSSGLRLSELAGLNMGDVNFDIGIVRVLGKGNKTRQ 204

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VP+      A+ +Y          N +        G  L+    Q  ++      G+ L+
Sbjct: 205 VPVGKKAMIALQDYLPHRNLWQKKNCKALFISERHGTRLSTRAIQLRLKVCATMAGIELN 264

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRH FA+H+LS+ GDLR+IQ +LGH  +STTQIYT+V+       + ++YD  HP
Sbjct: 265 MYPHLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHVDF----GALTKVYDHAHP 320

Query: 320 SITQ 323
              +
Sbjct: 321 RAYR 324


>gi|168186262|ref|ZP_02620897.1| tyrosine recombinase XerD [Clostridium botulinum C str. Eklund]
 gi|169295813|gb|EDS77946.1| tyrosine recombinase XerD [Clostridium botulinum C str. Eklund]
          Length = 292

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 79/308 (25%), Positives = 159/308 (51%), Gaps = 16/308 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +  + +++++  ++ LSK T+++Y  D  +F  FL    E  +    +       I A
Sbjct: 1   MEEYLRQYIEDMR-KKELSKNTIEAYNRDIIKFGKFLKERDENILNADMVS------IMA 53

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++   + +K  D S+ RS+  I++F KYL +     ++ ++N    K   ++P  L   +
Sbjct: 54  YVQTLKKEKKADSSIIRSIVSIRNFYKYLIRIGKDVDNPLINYEVPKNKRNIPEVLTIDE 113

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
               +     +     ++   R+ A+L L+Y  G+++SE L +T  +I      ++ +G 
Sbjct: 114 VEKFL-----NAPECNEYKGIRDKAMLELMYATGMKVSELLRVTIFDINLKLCYVKCRGA 168

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            DK RI+P+       + EY ++       N ++ LF  +RG  +    F + +++  + 
Sbjct: 169 KDKERIIPIGSYAVNCLNEYLNVRDKMSAANSEI-LFCNLRGGKMTRQGFWKIVKKYAKE 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+     ++TLRHSFA HLL NG D++S+Q +LGH  ++TTQIY++++ +N    ++++
Sbjct: 228 AGINKKIDSYTLRHSFAVHLLQNGADIKSVQELLGHNTIATTQIYSSISKQN---KIVDV 284

Query: 314 YDQTHPSI 321
           Y + HP  
Sbjct: 285 YKKAHPRA 292


>gi|306843458|ref|ZP_07476059.1| tyrosine recombinase XerD [Brucella sp. BO1]
 gi|306276149|gb|EFM57849.1| tyrosine recombinase XerD [Brucella sp. BO1]
          Length = 307

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 90/312 (28%), Positives = 138/312 (44%), Gaps = 16/312 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             +N+L+ +  ERG ++ TL+SY  D       LA           + +     IR  + 
Sbjct: 6   AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKG------VNLAEAETGHIRMTLD 59

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               Q     S  R LS ++ F ++L       +     +   KK   LP+ ++ +    
Sbjct: 60  TMAAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGK 119

Query: 137 LVDNVLLHTSHETKW----IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           L+D   L      +        R  A+L  LY  GLR+SE + L       D   L ++G
Sbjct: 120 LLDRAALEADEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRG 179

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLR 251
           KG K R+VPL    R+A+ ++  L       +    LF        L   VF R ++ L 
Sbjct: 180 KGSKDRMVPLSRKAREALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLA 239

Query: 252 RYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              GL  S  + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V  +     +
Sbjct: 240 ARAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER----L 295

Query: 311 MEIYDQTHPSIT 322
            ++  + HP   
Sbjct: 296 HKLVSEHHPLAD 307


>gi|261217851|ref|ZP_05932132.1| tyrosine recombinase xerD [Brucella ceti M13/05/1]
 gi|261321299|ref|ZP_05960496.1| tyrosine recombinase xerD [Brucella ceti M644/93/1]
 gi|260922940|gb|EEX89508.1| tyrosine recombinase xerD [Brucella ceti M13/05/1]
 gi|261293989|gb|EEX97485.1| tyrosine recombinase xerD [Brucella ceti M644/93/1]
          Length = 309

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 90/312 (28%), Positives = 138/312 (44%), Gaps = 16/312 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             +N+L+ +  ERG ++ TL+SY  D       LA           + +     IR  + 
Sbjct: 8   AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKG------VNLAEAETGHIRMTLD 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               Q     S  R LS ++ F ++L       +     +   KK   LP+ ++ +    
Sbjct: 62  TMAAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGFLDAPKKQKPLPKIMSVENVGK 121

Query: 137 LVDNVLLHTSHETKW----IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           L+D   L  +   +        R  A+L  LY  GLR+SE + L       D   L ++G
Sbjct: 122 LLDRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRG 181

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLR 251
           KG K R+VPL    R A+ ++  L       +    LF        L   VF R ++ L 
Sbjct: 182 KGSKDRMVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLA 241

Query: 252 RYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              GL  S  + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V  +     +
Sbjct: 242 ARAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER----L 297

Query: 311 MEIYDQTHPSIT 322
            ++  + HP   
Sbjct: 298 HKLVSEHHPLAD 309


>gi|329847560|ref|ZP_08262588.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19]
 gi|328842623|gb|EGF92192.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19]
          Length = 303

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 117/309 (37%), Positives = 167/309 (54%), Gaps = 11/309 (3%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L   R  W   L+ +R  S  TL +Y    R +  +L  +  E  ++  + +++  ++R 
Sbjct: 3   LDDARTAWFGWLKGQRRCSAHTLAAYGHAFRGYTDYLRQHWGE-ASLDDVARVTSADLRG 61

Query: 74  FISKRR--TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           +++  R     +  RSL + LS +KSF  YL          +  MR  +   +LPR LNE
Sbjct: 62  WMAYLRGKENPLSARSLAQHLSAVKSFHSYLDLHLDRGNVQVGLMRGPRLKATLPRPLNE 121

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            QA+ L+    +       W ++R+ A+  LLYG GLRISEALSLT  +     S LRI 
Sbjct: 122 DQAIGLLAETRMDA-DRDDWENSRDEAVYMLLYGLGLRISEALSLTVADTPLGDS-LRIT 179

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG+K+R++P+L +VR+AI  Y    PF L    +  LFR  RG  L+P   Q  ++ LR
Sbjct: 180 GKGNKMRVLPVLEAVREAIERYKSQQPFILAATDR--LFRAKRGGELSPRHVQATMQHLR 237

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             LGL    T H LRHSFATH+L +G DLRSIQ +LGH  LSTTQ YT V+++     ++
Sbjct: 238 SRLGLSDRATPHALRHSFATHMLGSGADLRSIQELLGHASLSTTQKYTQVDAER----LL 293

Query: 312 EIYDQTHPS 320
             Y   HP 
Sbjct: 294 SAYAAAHPK 302


>gi|325971096|ref|YP_004247287.1| tyrosine recombinase xerC [Spirochaeta sp. Buddy]
 gi|324026334|gb|ADY13093.1| Tyrosine recombinase xerC [Spirochaeta sp. Buddy]
          Length = 300

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 93/313 (29%), Positives = 156/313 (49%), Gaps = 26/313 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS- 76
            +++   L ++R LS+ T   Y  +   FL   + Y            ++ + I A+I  
Sbjct: 11  IEDYTDYLAMQRRLSEATQSVYAHELALFLAAGSDY----------ETITASLIEAYIVI 60

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           + +T+ + +RS+ + LS ++SF  +L+  KI  ++ +L ++  ++  SLP+  +  Q   
Sbjct: 61  QVQTRHLSERSVAKLLSALRSFFSFLQMSKIREDNPVLLIQRGRQKQSLPQVASVAQVDA 120

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L++++       +  +  R+  +  L+Y CGLRISEA +L   +    ++++R+ GK  K
Sbjct: 121 LLESI-----DTSDLLGFRDRTLFELIYSCGLRISEACTLQVSDY--QKTSIRVVGKRHK 173

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           IRI+P+    R  +  Y       L         LF G RG  L      +         
Sbjct: 174 IRIIPVGEIARMWVDAYLKDIRPKLIGMRLSTKALFVGRRGHQLTRQAMYKRFIAYCDVA 233

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           GL      HTLRHSFATHLL  G DLRS+Q +LGH  + TTQIYT+V++K     + + Y
Sbjct: 234 GLDAKV--HTLRHSFATHLLEGGADLRSVQELLGHSDIKTTQIYTHVDTKQ----LQKAY 287

Query: 315 DQTHPSITQKDKK 327
           +Q H  I  K+ +
Sbjct: 288 EQFHAGIHDKEDQ 300


>gi|161610765|ref|YP_067311.2| site-specific tyrosine recombinase XerD [Rickettsia typhi str.
           Wilmington]
          Length = 306

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 92/317 (29%), Positives = 156/317 (49%), Gaps = 27/317 (8%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ++  + +L+ L  ER LSK ++ SY+ D    L F  + T++KI+   I   +   IR +
Sbjct: 1   MEFIEQFLEMLLAERALSKNSILSYKRDL---LDFHNYLTKQKISELNI---TTRNIRKW 54

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I    +  +  RS+ R +S IKS+  +L     T  + +LN+   K  N LP  L+  Q 
Sbjct: 55  IEYLASNNLHARSINRKISTIKSYYTFLISENHTAFNPVLNVDLPKYQNKLPVILSIDQI 114

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-------QST 187
             +++      S +      R +A+++LLY  GLR+SE +SL   +I+ +       +  
Sbjct: 115 KLILEYC----SKDHTPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNNTSKGIVRKI 170

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGK-PLNPGVF 243
             + GKG+K R++ +      +I +Y  +    +N         LF        +    F
Sbjct: 171 FSVLGKGNKERVIVINDQAVLSITKYLKIRDIFVNKAKSKNLIYLFPSSAVAGYMTRQNF 230

Query: 244 QRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              ++ +   +GL P + + H LRHSFA+HLL  G DLR IQ +LGH  +STTQIYT+++
Sbjct: 231 AILLKSVALDIGLNPKNVSPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLH 290

Query: 303 SKNGGDWMMEIYDQTHP 319
           + +    ++      HP
Sbjct: 291 TNHLKQALL-----HHP 302


>gi|213691813|ref|YP_002322399.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|254799327|sp|B7GQE1|XERC_BIFLI RecName: Full=Tyrosine recombinase xerC
 gi|213523274|gb|ACJ52021.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320457907|dbj|BAJ68528.1| tyrosine recombinase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 355

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 83/366 (22%), Positives = 148/366 (40%), Gaps = 64/366 (17%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + S +   +  +++  L+  RGLS  TL++Y  D    L        E   +  + +++ 
Sbjct: 1   MSSTQFDGDIDSFVSYLKSNRGLSANTLKAYRADLTACLHLF-----ELRGVTDLNEITL 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++R++++   ++     S+ R    ++ F  +  +  +T       +      ++LP  
Sbjct: 56  DDLRSWMA-VESRDHARSSMARKTVAVRGFFAWAYEHGLTATDPAATLMTPSIPSTLPAV 114

Query: 129 LNEKQALTLVD---------------------------------------------NVLL 143
           L E QA  L+D                                                 
Sbjct: 115 LTESQAEQLLDVAEHAVATNQYKDDGGAAAASGSGKAAGKTADKSADTVNRSEAPARADK 174

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
             +        RN+AIL LLY  G+R++E +S+   +I     T+++ GKG+K R+VP  
Sbjct: 175 RDNARVTAESQRNAAILELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFG 234

Query: 204 PSVRKAILEYYDLCPFDL--------NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
              ++A+  + +     L               LF G RG  ++  + +  + +  R  G
Sbjct: 235 LPAQRALETWLEQGRPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAG 294

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +P   + H LRHS ATH+L  G DLR +Q +LGH  L TTQ YT+V+ +     +   Y 
Sbjct: 295 VP-DISPHALRHSAATHILDGGADLREVQEMLGHSSLKTTQRYTHVSIEQ----LKNRYG 349

Query: 316 QTHPSI 321
           Q  P  
Sbjct: 350 QAFPRA 355


>gi|89898086|ref|YP_515196.1| site-specific tyrosine recombinase XerD [Chlamydophila felis
           Fe/C-56]
 gi|89331458|dbj|BAE81051.1| integrase/recombinase [Chlamydophila felis Fe/C-56]
          Length = 298

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 96/305 (31%), Positives = 151/305 (49%), Gaps = 21/305 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   L ++RGLS+ ++ +Y  D   FL   A        I +I ++S   +  F+ +
Sbjct: 11  LEQFTLFLSVDRGLSRNSISAYSQDITLFLKISA--------ITSIEEISQDSVYLFVQQ 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              ++  + +L R L  +K F ++LK+ ++     +  + + K    LP  L  K+   L
Sbjct: 63  LHKRQESESTLARRLIALKVFFRFLKETELLDHPPL--IEHPKIWKRLPSVLTPKEVDAL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +   +  TS  +  I AR+SAIL+ LY  G+R+SE   L   ++ DD   LR+ GKG K 
Sbjct: 121 L--AIPKTSETSPMISARDSAILHTLYSTGIRVSELCGLCIGDVSDD--FLRVTGKGSKT 176

Query: 198 RIVPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R+VPL     K I  Y       F      +  LF  +RG  L      R I    + + 
Sbjct: 177 RLVPLGERACKTIDAYLCPFRETFQKQRPEEHHLFLSVRGHKLERSCVWRRIHHYAKQIT 236

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H+LRH+FATHLL N  DLR IQ +LGH R+++T+IYT+V S    D ++E + 
Sbjct: 237 -HKQVSPHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEIYTHVAS----DTLIENFL 291

Query: 316 QTHPS 320
             HP 
Sbjct: 292 SHHPR 296


>gi|148559822|ref|YP_001259843.1| site-specific tyrosine recombinase XerD [Brucella ovis ATCC 25840]
 gi|163844051|ref|YP_001628455.1| site-specific tyrosine recombinase XerD [Brucella suis ATCC 23445]
 gi|254700665|ref|ZP_05162493.1| site-specific tyrosine recombinase XerD [Brucella suis bv. 5 str.
           513]
 gi|254707447|ref|ZP_05169275.1| site-specific tyrosine recombinase XerD [Brucella pinnipedialis
           M163/99/10]
 gi|254709011|ref|ZP_05170822.1| site-specific tyrosine recombinase XerD [Brucella pinnipedialis
           B2/94]
 gi|256030536|ref|ZP_05444150.1| site-specific tyrosine recombinase XerD [Brucella pinnipedialis
           M292/94/1]
 gi|256059999|ref|ZP_05450181.1| site-specific tyrosine recombinase XerD [Brucella neotomae 5K33]
 gi|256158528|ref|ZP_05456422.1| site-specific tyrosine recombinase XerD [Brucella ceti M490/95/1]
 gi|256253942|ref|ZP_05459478.1| site-specific tyrosine recombinase XerD [Brucella ceti B1/94]
 gi|256370430|ref|YP_003107941.1| tyrosine recombinase [Brucella microti CCM 4915]
 gi|260169442|ref|ZP_05756253.1| site-specific tyrosine recombinase XerD [Brucella sp. F5/99]
 gi|148371079|gb|ABQ61058.1| tyrosine recombinase XerD [Brucella ovis ATCC 25840]
 gi|163674774|gb|ABY38885.1| tyrosine recombinase XerD [Brucella suis ATCC 23445]
 gi|256000593|gb|ACU48992.1| tyrosine recombinase [Brucella microti CCM 4915]
          Length = 307

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 90/312 (28%), Positives = 138/312 (44%), Gaps = 16/312 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             +N+L+ +  ERG ++ TL+SY  D       LA           + +     IR  + 
Sbjct: 6   AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKG------VNLAEAETGHIRMTLD 59

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               Q     S  R LS ++ F ++L       +     +   KK   LP+ ++ +    
Sbjct: 60  TMAAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGK 119

Query: 137 LVDNVLLHTSHETKW----IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           L+D   L  +   +        R  A+L  LY  GLR+SE + L       D   L ++G
Sbjct: 120 LLDRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRG 179

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLR 251
           KG K R+VPL    R A+ ++  L       +    LF        L   VF R ++ L 
Sbjct: 180 KGSKDRMVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLA 239

Query: 252 RYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              GL  S  + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V  +     +
Sbjct: 240 ARAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER----L 295

Query: 311 MEIYDQTHPSIT 322
            ++  + HP   
Sbjct: 296 HKLVSEHHPLAD 307


>gi|326391735|ref|ZP_08213258.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus JW 200]
 gi|325992235|gb|EGD50704.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus JW 200]
          Length = 290

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 79/302 (26%), Positives = 137/302 (45%), Gaps = 19/302 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L   + LSK TL+SY  D  QFL +L         ++       + I  ++   +
Sbjct: 8   EFLDFLTKNKKLSKNTLESYNRDINQFLNYLEEIGINCYNVK------KSTILNYLYYLK 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +     ++ R+LS +K+F  YL  +K   E     +   K     P  L  +Q      
Sbjct: 62  KKGKSQATVSRNLSSLKAFYHYLFMKKKIEEDPTYMINTPKVEKKPPTTLTVEQV----- 116

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           ++LL           R+ A++ LLY  GL++SE +SL  +++      + I+   +K R+
Sbjct: 117 DMLLSLDFGDDEKGLRDKALIELLYATGLKVSEVISLKLEDVNLSYGYVVIRS--NKERV 174

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +P+     +A+  Y +        N +  LF  +RG+ L      + IR+    +     
Sbjct: 175 IPIGSHAIEALKNYIEKG--RKAKNGENTLFLNLRGQKLTRQGCWKIIREYTDKINPGFP 232

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T +TLR SFA H+L NG D+R++Q +LG+     T + TN+ S      + E+Y++ HP
Sbjct: 233 VTPNTLRQSFAQHMLQNGADIRAVQEMLGYQ----TDLNTNLLSLISKSKIKEVYNKFHP 288

Query: 320 SI 321
             
Sbjct: 289 RA 290


>gi|103485754|ref|YP_615315.1| phage integrase [Sphingopyxis alaskensis RB2256]
 gi|98975831|gb|ABF51982.1| phage integrase [Sphingopyxis alaskensis RB2256]
          Length = 297

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 116/304 (38%), Positives = 181/304 (59%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            ++W  +L  E+  S+ T ++Y     +F  FL+ +    +    +  L+  ++RA+++ 
Sbjct: 6   IRDWDAHLAHEKRRSEHTRRAYIATAERFCAFLSLHRGGAVDAAMLTALTPNDLRAYLAD 65

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           RR + +G+ S  R LS +++FL+++      + +++  MR  +    LPR ++  +A+ L
Sbjct: 66  RRAEGLGNASAARELSALRAFLRFVGG----SNASVPQMRGPRVKKGLPRPVSPAEAMQL 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
             NV  +      W+ AR+ A+L LLYG GLRI EAL+LT   +     TLR+ GK +K 
Sbjct: 122 AQNVEDNA--REGWVGARDFALLLLLYGAGLRIGEALALTGAAMPLGD-TLRVTGKRNKT 178

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RIVP+LP+V KA+  Y   CP+ +    + PLF G+RG PL+PGV +  +R  RR LGL 
Sbjct: 179 RIVPILPAVAKAVARYVAACPWPIAR--ETPLFLGVRGGPLHPGVVRVSVRSARRALGLS 236

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
             TT H LRHSFATHLL+ G DLRS+Q +LGH  L++TQIYT V++ +    +++IY   
Sbjct: 237 DRTTPHALRHSFATHLLAGGADLRSLQELLGHASLASTQIYTAVDAAH----LLDIYRSA 292

Query: 318 HPSI 321
           HP  
Sbjct: 293 HPRA 296


>gi|23502879|ref|NP_699006.1| site-specific tyrosine recombinase XerD [Brucella suis 1330]
 gi|161619947|ref|YP_001593834.1| site-specific tyrosine recombinase XerD [Brucella canis ATCC 23365]
 gi|254705035|ref|ZP_05166863.1| site-specific tyrosine recombinase XerD [Brucella suis bv. 3 str.
           686]
 gi|23348908|gb|AAN30921.1| integrase/recombinase XerD [Brucella suis 1330]
 gi|161336758|gb|ABX63063.1| tyrosine recombinase XerD [Brucella canis ATCC 23365]
          Length = 307

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 90/312 (28%), Positives = 138/312 (44%), Gaps = 16/312 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             +N+L+ +  ERG ++ TL+SY  D       LA           + +     IR  + 
Sbjct: 6   AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKG------VNLAEAETGHIRMTLD 59

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               Q     S  R LS ++ F ++L       +     +   KK   LP+ ++ +    
Sbjct: 60  TMAAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGR 119

Query: 137 LVDNVLLHTSHETKW----IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           L+D   L  +   +        R  A+L  LY  GLR+SE + L       D   L ++G
Sbjct: 120 LLDRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRG 179

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLR 251
           KG K R+VPL    R A+ ++  L       +    LF        L   VF R ++ L 
Sbjct: 180 KGSKDRMVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLA 239

Query: 252 RYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              GL  S  + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V  +     +
Sbjct: 240 ARAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER----L 295

Query: 311 MEIYDQTHPSIT 322
            ++  + HP   
Sbjct: 296 HKLVSEHHPLAD 307


>gi|225626413|ref|ZP_03784452.1| tyrosine recombinase XerD [Brucella ceti str. Cudo]
 gi|261221082|ref|ZP_05935363.1| tyrosine recombinase xerD [Brucella ceti B1/94]
 gi|261314935|ref|ZP_05954132.1| tyrosine recombinase xerD [Brucella pinnipedialis M163/99/10]
 gi|261316509|ref|ZP_05955706.1| tyrosine recombinase xerD [Brucella pinnipedialis B2/94]
 gi|261323973|ref|ZP_05963170.1| tyrosine recombinase xerD [Brucella neotomae 5K33]
 gi|261751173|ref|ZP_05994882.1| tyrosine recombinase xerD [Brucella suis bv. 5 str. 513]
 gi|261758967|ref|ZP_06002676.1| tyrosine recombinase xerD [Brucella sp. F5/99]
 gi|265987583|ref|ZP_06100140.1| tyrosine recombinase xerD [Brucella pinnipedialis M292/94/1]
 gi|265997042|ref|ZP_06109599.1| tyrosine recombinase xerD [Brucella ceti M490/95/1]
 gi|294851262|ref|ZP_06791935.1| tyrosine recombinase XerD [Brucella sp. NVSL 07-0026]
 gi|225618070|gb|EEH15113.1| tyrosine recombinase XerD [Brucella ceti str. Cudo]
 gi|260919666|gb|EEX86319.1| tyrosine recombinase xerD [Brucella ceti B1/94]
 gi|261295732|gb|EEX99228.1| tyrosine recombinase xerD [Brucella pinnipedialis B2/94]
 gi|261299953|gb|EEY03450.1| tyrosine recombinase xerD [Brucella neotomae 5K33]
 gi|261303961|gb|EEY07458.1| tyrosine recombinase xerD [Brucella pinnipedialis M163/99/10]
 gi|261738951|gb|EEY26947.1| tyrosine recombinase xerD [Brucella sp. F5/99]
 gi|261740926|gb|EEY28852.1| tyrosine recombinase xerD [Brucella suis bv. 5 str. 513]
 gi|262551510|gb|EEZ07500.1| tyrosine recombinase xerD [Brucella ceti M490/95/1]
 gi|264659780|gb|EEZ30041.1| tyrosine recombinase xerD [Brucella pinnipedialis M292/94/1]
 gi|294819851|gb|EFG36850.1| tyrosine recombinase XerD [Brucella sp. NVSL 07-0026]
          Length = 309

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 90/312 (28%), Positives = 138/312 (44%), Gaps = 16/312 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             +N+L+ +  ERG ++ TL+SY  D       LA           + +     IR  + 
Sbjct: 8   AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKG------VNLAEAETGHIRMTLD 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               Q     S  R LS ++ F ++L       +     +   KK   LP+ ++ +    
Sbjct: 62  TMAAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGK 121

Query: 137 LVDNVLLHTSHETKW----IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           L+D   L  +   +        R  A+L  LY  GLR+SE + L       D   L ++G
Sbjct: 122 LLDRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRG 181

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLR 251
           KG K R+VPL    R A+ ++  L       +    LF        L   VF R ++ L 
Sbjct: 182 KGSKDRMVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLA 241

Query: 252 RYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              GL  S  + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V  +     +
Sbjct: 242 ARAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER----L 297

Query: 311 MEIYDQTHPSIT 322
            ++  + HP   
Sbjct: 298 HKLVSEHHPLAD 309


>gi|295111500|emb|CBL28250.1| Site-specific recombinase XerD [Synergistetes bacterium SGP1]
          Length = 308

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 91/302 (30%), Positives = 132/302 (43%), Gaps = 25/302 (8%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R  S+ TL +Y  D RQF  +L     E      +R +    +RA++           ++
Sbjct: 16  RSQSEHTLVNYASDLRQFAEYL-----EGCGASEVRSVEAPILRAYLRALFGWGYAKATV 70

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R LS ++SF  +LK+R +       N+R       +PRAL+E+    L        +  
Sbjct: 71  ARKLSSLRSFFAFLKERGVLERDPARNLRGPGAPRRIPRALSEEVVERLF------AAAG 124

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
                 R++AIL +LYGCGLR+SE   L  +++  D+  L I GKG K R VP     ++
Sbjct: 125 ESEEALRDTAILEVLYGCGLRVSELTGLRWEDVDLDERWLIILGKGSKERRVPFGRCAQR 184

Query: 209 AILE---------YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           A+           +  +         +         KP+      R +  L    GL   
Sbjct: 185 ALTALRGEQALGPFVFVGHEGAGSPGREGRRGRTGQKPVTVRTVHRVVTALAARAGLE-G 243

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T H LRHS ATHLL +G  L+ +Q  LGH  L+TTQIY  V+      WM E Y   HP
Sbjct: 244 VTPHVLRHSCATHLLEHGASLKFVQEFLGHESLATTQIYLTVS----ASWMKESYAAAHP 299

Query: 320 SI 321
             
Sbjct: 300 RA 301


>gi|282890174|ref|ZP_06298704.1| hypothetical protein pah_c014o025 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499831|gb|EFB42120.1| hypothetical protein pah_c014o025 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 329

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 86/337 (25%), Positives = 146/337 (43%), Gaps = 38/337 (11%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF-----YTEEKITIQ------- 61
            ++    +L+ L I +  S+ T+++Y  D      +L         +EK+  +       
Sbjct: 2   FIEAAYRFLEYLRIIKNASEHTVRNYAIDLNALKEYLEHDLLPEEEDEKLPPKIRYNEPF 61

Query: 62  -----------TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE 110
                       +  ++   IR F++     ++  R++ R LS +++F KY   +K  + 
Sbjct: 62  SERLKTYDAALVLDTITRKTIRGFLAHLSDNQVHKRTVVRRLSSLRTFFKYTLAQKWISA 121

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
           +    + + +    +P +L+  Q  TL D           ++  R+  I+ L Y  GLR+
Sbjct: 122 NPTEELESPRVEKKVPNSLSYDQVQTLFDQ-----PDTKTFLGFRDRVIMELFYSSGLRV 176

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-- 228
           SE ++L  Q        ++++GKG K RIVP+  +    I  Y       + ++      
Sbjct: 177 SELVALDRQEFDPKNLLIKLKGKGKKERIVPITKNAADWINAYLTHPERCVEIDGHFAQQ 236

Query: 229 ----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
               +F    G  L      R   +     GL    T HT+RH+ ATH L NG DL++IQ
Sbjct: 237 DSNAIFLNRLGTRLTTRSVDRKFDKYLTASGLIGKVTPHTIRHTIATHWLENGMDLKTIQ 296

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            ILGH  L+TT IYT V+         ++YDQTHP  
Sbjct: 297 MILGHISLATTTIYTQVS----KGLKKKVYDQTHPRA 329


>gi|260567497|ref|ZP_05837967.1| tyrosine recombinase xerD [Brucella suis bv. 4 str. 40]
 gi|261755736|ref|ZP_05999445.1| tyrosine recombinase xerD [Brucella suis bv. 3 str. 686]
 gi|34222805|sp|Q7ZAN6|XERD_BRUSU RecName: Full=Tyrosine recombinase xerD
 gi|260157015|gb|EEW92095.1| tyrosine recombinase xerD [Brucella suis bv. 4 str. 40]
 gi|261745489|gb|EEY33415.1| tyrosine recombinase xerD [Brucella suis bv. 3 str. 686]
          Length = 309

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 90/312 (28%), Positives = 138/312 (44%), Gaps = 16/312 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             +N+L+ +  ERG ++ TL+SY  D       LA           + +     IR  + 
Sbjct: 8   AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKG------VNLAEAETGHIRMTLD 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               Q     S  R LS ++ F ++L       +     +   KK   LP+ ++ +    
Sbjct: 62  TMAAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGR 121

Query: 137 LVDNVLLHTSHETKW----IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           L+D   L  +   +        R  A+L  LY  GLR+SE + L       D   L ++G
Sbjct: 122 LLDRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRG 181

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLR 251
           KG K R+VPL    R A+ ++  L       +    LF        L   VF R ++ L 
Sbjct: 182 KGSKDRMVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLA 241

Query: 252 RYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              GL  S  + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V  +     +
Sbjct: 242 ARAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER----L 297

Query: 311 MEIYDQTHPSIT 322
            ++  + HP   
Sbjct: 298 HKLVSEHHPLAD 309


>gi|298292762|ref|YP_003694701.1| integrase family protein [Starkeya novella DSM 506]
 gi|296929273|gb|ADH90082.1| integrase family protein [Starkeya novella DSM 506]
          Length = 334

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 76/328 (23%), Positives = 132/328 (40%), Gaps = 36/328 (10%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E + +L  +  ERG    TL +Y  D   +  FL       +      +     IRA+++
Sbjct: 5   EARLFLDMMAAERGAGANTLAAYGRDLDDYEAFLVDEGVGPL------EAGTEHIRAWLA 58

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               + +   S+ R LS ++ F ++L       +     +   ++   LP+ L   +  T
Sbjct: 59  ALSARGLAGASVARKLSAVRQFHRFLYVETYRGDDPAAVLEGPRRGRPLPKVLTLDEVTT 118

Query: 137 LVD---NVLLHTSHETKWIDARNSA------------------ILYLLYGCGLRISEALS 175
           L++                   + A                   + LLY  GLR+SE  +
Sbjct: 119 LIETAHARAAAPCAAPAAGALPDRAGDAAVRAGEAARRARVACFVELLYATGLRVSELAA 178

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-------DLCPFDLNLNIQLP 228
           L           + ++GKG+K R+VPL  + + A+  Y         +            
Sbjct: 179 LPASAANAKGDAIIVRGKGNKERLVPLGEAAKGAMRAYRVALGQAATVKGAKARPEDGRW 238

Query: 229 LFRGIRGK-PLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           LF        +        ++ L    GL P   + H LRH+FA+HLL++G DLR +Q++
Sbjct: 239 LFPSAAASGHITRQQVALDLKDLALAAGLDPSKLSPHVLRHAFASHLLAHGADLRIVQTL 298

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           LGH  +STTQIYT+V  +     + +++
Sbjct: 299 LGHSDISTTQIYTHVLDERLKSLVRDLH 326


>gi|15610031|ref|NP_217410.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           H37Rv]
 gi|31794070|ref|NP_856563.1| site-specific tyrosine recombinase XerC [Mycobacterium bovis
           AF2122/97]
 gi|121638775|ref|YP_978999.1| site-specific tyrosine recombinase XerC [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148662738|ref|YP_001284261.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           H37Ra]
 gi|148824083|ref|YP_001288837.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           F11]
 gi|215404868|ref|ZP_03417049.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           02_1987]
 gi|215431842|ref|ZP_03429761.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           EAS054]
 gi|219558917|ref|ZP_03537993.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           T17]
 gi|224991267|ref|YP_002645956.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253798018|ref|YP_003031019.1| integrase xerC [Mycobacterium tuberculosis KZN 1435]
 gi|254232988|ref|ZP_04926315.1| integrase/recombinase xerC [Mycobacterium tuberculosis C]
 gi|254365534|ref|ZP_04981579.1| integrase/recombinase xerC [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254551966|ref|ZP_05142413.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260187913|ref|ZP_05765387.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           CPHL_A]
 gi|260202029|ref|ZP_05769520.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           T46]
 gi|260206212|ref|ZP_05773703.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           K85]
 gi|289444449|ref|ZP_06434193.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T46]
 gi|289448559|ref|ZP_06438303.1| integrase xerC [Mycobacterium tuberculosis CPHL_A]
 gi|289553317|ref|ZP_06442527.1| integrase xerC [Mycobacterium tuberculosis KZN 605]
 gi|289571083|ref|ZP_06451310.1| integrase xerC [Mycobacterium tuberculosis T17]
 gi|289575599|ref|ZP_06455826.1| integrase xerC [Mycobacterium tuberculosis K85]
 gi|289746693|ref|ZP_06506071.1| tyrosine recombinase XerC [Mycobacterium tuberculosis 02_1987]
 gi|289755006|ref|ZP_06514384.1| tyrosine recombinase XerC [Mycobacterium tuberculosis EAS054]
 gi|294994010|ref|ZP_06799701.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           210]
 gi|297635512|ref|ZP_06953292.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           KZN 4207]
 gi|297732511|ref|ZP_06961629.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           KZN R506]
 gi|306777182|ref|ZP_07415519.1| integrase xerC [Mycobacterium tuberculosis SUMu001]
 gi|306781089|ref|ZP_07419426.1| integrase xerC [Mycobacterium tuberculosis SUMu002]
 gi|306785729|ref|ZP_07424051.1| integrase xerC [Mycobacterium tuberculosis SUMu003]
 gi|306789768|ref|ZP_07428090.1| integrase xerC [Mycobacterium tuberculosis SUMu004]
 gi|306794582|ref|ZP_07432884.1| integrase xerC [Mycobacterium tuberculosis SUMu005]
 gi|306798823|ref|ZP_07437125.1| integrase xerC [Mycobacterium tuberculosis SUMu006]
 gi|306804671|ref|ZP_07441339.1| integrase xerC [Mycobacterium tuberculosis SUMu008]
 gi|306808863|ref|ZP_07445531.1| integrase xerC [Mycobacterium tuberculosis SUMu007]
 gi|306968962|ref|ZP_07481623.1| integrase xerC [Mycobacterium tuberculosis SUMu009]
 gi|306973299|ref|ZP_07485960.1| integrase xerC [Mycobacterium tuberculosis SUMu010]
 gi|307081007|ref|ZP_07490177.1| integrase xerC [Mycobacterium tuberculosis SUMu011]
 gi|307085605|ref|ZP_07494718.1| integrase xerC [Mycobacterium tuberculosis SUMu012]
 gi|313659843|ref|ZP_07816723.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           KZN V2475]
 gi|54039881|sp|P67629|XERC_MYCBO RecName: Full=Tyrosine recombinase xerC
 gi|54042778|sp|P67628|XERC_MYCTU RecName: Full=Tyrosine recombinase xerC
 gi|166918887|sp|A1KMN8|XERC_MYCBP RecName: Full=Tyrosine recombinase xerC
 gi|166918891|sp|A5U6P9|XERC_MYCTA RecName: Full=Tyrosine recombinase xerC
 gi|254799347|sp|C1AG09|XERC_MYCBT RecName: Full=Tyrosine recombinase xerC
 gi|3250705|emb|CAA98378.1| PROBABLE INTEGRASE/RECOMBINASE XERC [Mycobacterium tuberculosis
           H37Rv]
 gi|31619665|emb|CAD96605.1| PROBABLE INTEGRASE/RECOMBINASE XERC [Mycobacterium bovis AF2122/97]
 gi|121494423|emb|CAL72904.1| Probable integrase/recombinase xerC [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124602047|gb|EAY61057.1| integrase/recombinase xerC [Mycobacterium tuberculosis C]
 gi|134151047|gb|EBA43092.1| integrase/recombinase xerC [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506890|gb|ABQ74699.1| tyrosine recombinase [Mycobacterium tuberculosis H37Ra]
 gi|148722610|gb|ABR07235.1| integrase/recombinase xerC [Mycobacterium tuberculosis F11]
 gi|224774382|dbj|BAH27188.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253319521|gb|ACT24124.1| integrase xerC [Mycobacterium tuberculosis KZN 1435]
 gi|289417368|gb|EFD14608.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T46]
 gi|289421517|gb|EFD18718.1| integrase xerC [Mycobacterium tuberculosis CPHL_A]
 gi|289437949|gb|EFD20442.1| integrase xerC [Mycobacterium tuberculosis KZN 605]
 gi|289540030|gb|EFD44608.1| integrase xerC [Mycobacterium tuberculosis K85]
 gi|289544837|gb|EFD48485.1| integrase xerC [Mycobacterium tuberculosis T17]
 gi|289687221|gb|EFD54709.1| tyrosine recombinase XerC [Mycobacterium tuberculosis 02_1987]
 gi|289695593|gb|EFD63022.1| tyrosine recombinase XerC [Mycobacterium tuberculosis EAS054]
 gi|308214464|gb|EFO73863.1| integrase xerC [Mycobacterium tuberculosis SUMu001]
 gi|308326075|gb|EFP14926.1| integrase xerC [Mycobacterium tuberculosis SUMu002]
 gi|308329639|gb|EFP18490.1| integrase xerC [Mycobacterium tuberculosis SUMu003]
 gi|308333778|gb|EFP22629.1| integrase xerC [Mycobacterium tuberculosis SUMu004]
 gi|308337172|gb|EFP26023.1| integrase xerC [Mycobacterium tuberculosis SUMu005]
 gi|308340939|gb|EFP29790.1| integrase xerC [Mycobacterium tuberculosis SUMu006]
 gi|308344815|gb|EFP33666.1| integrase xerC [Mycobacterium tuberculosis SUMu007]
 gi|308348763|gb|EFP37614.1| integrase xerC [Mycobacterium tuberculosis SUMu008]
 gi|308353464|gb|EFP42315.1| integrase xerC [Mycobacterium tuberculosis SUMu009]
 gi|308357329|gb|EFP46180.1| integrase xerC [Mycobacterium tuberculosis SUMu010]
 gi|308361213|gb|EFP50064.1| integrase xerC [Mycobacterium tuberculosis SUMu011]
 gi|308364867|gb|EFP53718.1| integrase xerC [Mycobacterium tuberculosis SUMu012]
 gi|323718504|gb|EGB27675.1| integrase xerC [Mycobacterium tuberculosis CDC1551A]
 gi|326904508|gb|EGE51441.1| integrase xerC [Mycobacterium tuberculosis W-148]
 gi|328457792|gb|AEB03215.1| integrase xerC [Mycobacterium tuberculosis KZN 4207]
          Length = 298

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 79/309 (25%), Positives = 134/309 (43%), Gaps = 12/309 (3%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +      + + L ++ G S  T ++Y  D R    FLA          ++  L+ + +R+
Sbjct: 1   MQAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRG------SSLDALTLSVLRS 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++          +L R  S +K+F  +  +R +        ++  K   +LP  L + Q
Sbjct: 55  WLAATAGAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQ 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           AL  +       + +   +  R+  I+ LLY  G+R+SE   L   +I      +R+ GK
Sbjct: 115 ALRAM-AAAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGK 173

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G+K R VP       A+  +       L        L  G RG+ L+    +  + Q   
Sbjct: 174 GNKQRTVPFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVA 233

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            +        H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V        +  
Sbjct: 234 AVDGAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVAR----LRA 289

Query: 313 IYDQTHPSI 321
           ++++ HP  
Sbjct: 290 VHERAHPRA 298


>gi|227547623|ref|ZP_03977672.1| tyrosine recombinase XerC [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|227211878|gb|EEI79774.1| tyrosine recombinase XerC [Bifidobacterium longum subsp. infantis
           ATCC 55813]
          Length = 355

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 84/366 (22%), Positives = 149/366 (40%), Gaps = 64/366 (17%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + S +   +  +++  L+  RGLS  TL++Y  D    L        E   +  + +++ 
Sbjct: 1   MSSTQFDGDIDSFVSYLKSNRGLSVNTLKAYRADLTACLHLF-----ELRGVTDLNEITL 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++R++++   ++     S+ R    ++ F  +  +  +TT      +      ++LP  
Sbjct: 56  DDLRSWMA-VESRDHARSSMARKTVAVRGFFAWAYEHGLTTTDPAATLMTPSIPSTLPAV 114

Query: 129 LNEKQALTLVD---------------------------------------------NVLL 143
           L E QA  L+D                                                 
Sbjct: 115 LTESQAEQLLDVAEHAVATNQYKDDGGAAAASGSGKAAGKTADKSADTVNRSEAPARADK 174

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
             +        RN+AIL LLY  G+R++E +S+   +I     T+++ GKG+K R+VP  
Sbjct: 175 RDNARVTAESQRNAAILELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFG 234

Query: 204 PSVRKAILEYYDLCPFDL--------NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
              ++A+  + +     L               LF G RG  ++  + +  + +  R  G
Sbjct: 235 LPAQRALETWLEQGRPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAG 294

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +P   + H LRHS ATH+L  G DLR +Q +LGH  L TTQ YT+V+ +     +   Y 
Sbjct: 295 VP-DISPHALRHSAATHILDGGADLREVQEMLGHSSLKTTQRYTHVSIEQ----LKNRYG 349

Query: 316 QTHPSI 321
           Q  P  
Sbjct: 350 QAFPRA 355


>gi|27375301|ref|NP_766830.1| site-specific integrase/recombinase [Bradyrhizobium japonicum USDA
           110]
 gi|34222843|sp|Q89XW5|XERD_BRAJA RecName: Full=Tyrosine recombinase xerD
 gi|27348437|dbj|BAC45455.1| xerD [Bradyrhizobium japonicum USDA 110]
          Length = 318

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 83/315 (26%), Positives = 136/315 (43%), Gaps = 22/315 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L  E+G    TL +Y  D   F  FL           +        +R +++   T
Sbjct: 14  FLDMLAAEQGAGPNTLDAYRRDLTDFSEFLGRVGH------SFADAETQTLRDYLADLDT 67

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     S+ R LS ++   ++L   +I  +     +   K+   LP+ L+      ++  
Sbjct: 68  RGFKSTSVARRLSAMRHLYRFLLNERIRGDDPAAILSGPKRGRGLPKVLSIADVDRMLRR 127

Query: 141 VLLHTSHETKWIDARNSAI-----LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
               +  E      R  A+     L +LY  GLR+SE ++L       D   + ++GKG+
Sbjct: 128 ARELSEAEDASPSKRLRALRLYCLLEVLYATGLRVSELVALPRTAAKRDARMIVVRGKGN 187

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLN-----IQLPLFRGIRGK-PLNPGVFQRYIRQ 249
           K R+VPL  + R+A+ +Y        +           LF        L    F R +++
Sbjct: 188 KERLVPLNEASRQAMADYLAATEAAKSDKKTGVAASKWLFPSFGESGHLTRQHFARDLKE 247

Query: 250 LRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           L    GL     + H LRH+FA+HLL NG DLR +Q++LGH  +STTQIYT+V  +    
Sbjct: 248 LAVASGLQARLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER--- 304

Query: 309 WMMEIYDQTHPSITQ 323
            +  +    HP   +
Sbjct: 305 -LKSLVRDLHPLAEK 318


>gi|254440057|ref|ZP_05053551.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198255503|gb|EDY79817.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 315

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 81/330 (24%), Positives = 138/330 (41%), Gaps = 31/330 (9%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M   N P           Q +L+    E   +  T  +Y  D   F         E++  
Sbjct: 1   MSAANRPNA------HWIQAFLEAQAAELDAATNTQLAYARDLIDF--------SERLKG 46

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
                ++   +  ++       +   +  R LS IK   ++  +     ++  + +    
Sbjct: 47  IHFAAVTQDHVEKYLIWCDAHGLAKSTRARRLSAIKQLFRFAFEEGWRVDNPAIQVSGPG 106

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +   LP+ L+  +   L+     + + + K    R + ++ LLY  G+R++E +SL    
Sbjct: 107 RDKRLPKTLSHDEVDALL-----NAARDAKKEPLRTTCLMELLYATGMRVTELVSLPVSA 161

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL------PLFRGI- 233
              D   L ++GKGDK R+VPL P  R A   +        +   +        LF    
Sbjct: 162 ARGDPRMLLVRGKGDKERMVPLSPPARAATAIWLKTRDRTEDEAFKDGTPRSKFLFPSRG 221

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +   L    F   I+ L    G+P    T HT+RH+FATHLL  G DLRSIQ++LGH  +
Sbjct: 222 KLGHLTRQSFFNLIKDLALAGGVPPFKATPHTMRHAFATHLLEGGADLRSIQTLLGHADV 281

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           +TT+IYT+V  +     + ++  + HP   
Sbjct: 282 ATTEIYTHVLDER----LKKLVLEYHPLAK 307


>gi|256379909|ref|YP_003103569.1| integrase family protein [Actinosynnema mirum DSM 43827]
 gi|255924212|gb|ACU39723.1| integrase family protein [Actinosynnema mirum DSM 43827]
          Length = 325

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 81/312 (25%), Positives = 149/312 (47%), Gaps = 9/312 (2%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +  ++      + ++L +ERGLS  T+++Y  D    L+ LA  T    T++++  L   
Sbjct: 21  LPSDVATALDAYERHLSLERGLSPHTVRAYLGDAVALLVHLAAGTPGDATVESVDLLG-- 78

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R++++ +  +     ++ R  +  ++   +  +  +  E     +   +   +LP  +
Sbjct: 79  -LRSWLAAQHAEGASRTTMARRAASARALTAWAARTGLLAEDPGPRLNAPRPHRTLPVVV 137

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              QA   +       + +   +  R+ A++ LLY  G+R++E   L   ++   Q  +R
Sbjct: 138 RPDQAGAAL-EAAAAGADQHDPVALRDRAVVELLYASGVRVAELCGLDLDDVDYSQRVIR 196

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           + GKG + R VP      +A+ ++ DL    L        LF G RG  L+P   +R + 
Sbjct: 197 VLGKGSRERTVPFGVPAERAVRQWADLGRSALVTERSHRALFLGARGGRLDPRTARRVVH 256

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            +   +        H LRHS ATHLL  G DLR++Q +LGH  L+TTQ+YT+V  +    
Sbjct: 257 DVMGAVPGSADVGPHGLRHSAATHLLEGGADLRTVQELLGHATLATTQLYTHVTVER--- 313

Query: 309 WMMEIYDQTHPS 320
            +  I+D+THP 
Sbjct: 314 -LKAIHDRTHPR 324


>gi|289644810|ref|ZP_06476863.1| integrase family protein [Frankia symbiont of Datisca glomerata]
 gi|289505366|gb|EFD26412.1| integrase family protein [Frankia symbiont of Datisca glomerata]
          Length = 404

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 78/315 (24%), Positives = 135/315 (42%), Gaps = 22/315 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L++L  ER  S  T+++Y  D      +      +++ +     +    +R +++  R
Sbjct: 99  AYLRHLATERDRSPETVRAYRADLAHLRGYA-----QEVGLDGPTGVDLGVLRGWLAGMR 153

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +     +L R  S  + F  +  ++          +   ++  SLP  L   QA  L+ 
Sbjct: 154 ARGAAATTLARRASVARGFSAFAARQGWLAADVAERLAGPRRPASLPTVLTAAQAWELLA 213

Query: 140 NVLLHTSHETKWIDA------------RNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
                         A            R+ A+L LLY    R+SE   L   ++ D++  
Sbjct: 214 ARPRPLPDGGDPPAAGQSAAGQSAVVVRDDAVLELLYATATRVSELCGLDIDDVDDERRL 273

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRY 246
           +R++GKG + R VP     ++A+  +       L        LF G+RG+ L+P   +R 
Sbjct: 274 VRVRGKGGRERAVPFGVPAQRALRNWLAAGRPTLAVAGSGRALFLGVRGRRLDPRTVRRI 333

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +             + H +RHS ATHLL+ G DLRS+Q  LGH   +TTQIYT+V  +  
Sbjct: 334 LAARTATADGIGPISPHGIRHSAATHLLAGGADLRSVQEFLGHASPATTQIYTHVTPQR- 392

Query: 307 GDWMMEIYDQTHPSI 321
              +   ++Q+HP  
Sbjct: 393 ---LRAAFEQSHPRA 404


>gi|227495411|ref|ZP_03925727.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436]
 gi|226830958|gb|EEH63341.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436]
          Length = 317

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 85/313 (27%), Positives = 144/313 (46%), Gaps = 26/313 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L +E+G S  T+  Y  D  +FL+      E  I    + Q+    I A +++   
Sbjct: 17  FLDYLTVEKGASAHTVAGYRRDLERFLV------ERGIADTPLAQVDTVAIDAHLTQLSL 70

Query: 81  Q-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                  +   S+ R+ + I++  +Y     I +      ++  K    LP+A++ ++  
Sbjct: 71  GFAGKPGLSAASIARARASIRALFRYAVSEDILSADPAAEVQQKKLGKHLPKAISLEEIA 130

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--GK 193
            +++            +  R+ A++ LLYG G RI+E ++L+P ++        ++  GK
Sbjct: 131 AMLEV----AGQRPGPVGLRDVALIELLYGTGARITEVMNLSPDDLYLAGEFPHVKLFGK 186

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVFQRYIR 248
           G K R+VPL     +A+ +Y  L    L    +      PLF   RG  L+       I 
Sbjct: 187 GRKERLVPLGSFAVQALEDYLLLGRPLLLGKAKTRVAGHPLFLNKRGLSLSRQSAWEIIS 246

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           Q     G     + H+LRHSFATHLL  G  +R +Q +LGH  ++TTQIYT V+     +
Sbjct: 247 QTAVAAGCVSEVSPHSLRHSFATHLLEGGASIRDVQELLGHASVTTTQIYTKVS----MN 302

Query: 309 WMMEIYDQTHPSI 321
            + E++  THP  
Sbjct: 303 TLREVHALTHPRA 315


>gi|330993350|ref|ZP_08317285.1| Tyrosine recombinase xerD [Gluconacetobacter sp. SXCC-1]
 gi|329759380|gb|EGG75889.1| Tyrosine recombinase xerD [Gluconacetobacter sp. SXCC-1]
          Length = 307

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 85/306 (27%), Positives = 133/306 (43%), Gaps = 18/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L+    ERG +  TL +Y  D       L           T R     ++RA+++ 
Sbjct: 6   IDAFLEMQAAERGAALNTLAAYARDLADMTAVL------HAGGVTARTAGEADLRAYLAG 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q +  R+  R LS +K +  +L +  +  ++    +   +    LPR L+E +   L
Sbjct: 60  LAGQGLAARTQARRLSCLKQYFLFLAREGMRPDNPAALLEAPRLDTPLPRFLSEGEVEAL 119

Query: 138 VDNVLLHTSHETKWID--ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +                     A L +LY  GLRISE L+L  + +      + ++GKG 
Sbjct: 120 LAACAPEPDATPARQRRLQVARAALEMLYASGLRISELLALPRRALDAAPGMMLVRGKGG 179

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYL 254
           + R+VP+    R+A                   LF G    +P+    F R +  +    
Sbjct: 180 RERMVPMSARAREA----ARALMEADAARRSPFLFPGRGVARPMTRQGFDRILHDVALRA 235

Query: 255 GL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GL P   + H LRHSFATHLL++G DLR++Q +LGH  ++TTQIYT+V      D + E 
Sbjct: 236 GLDPARLSPHVLRHSFATHLLAHGADLRALQVLLGHADIATTQIYTHV----MLDRLREA 291

Query: 314 YDQTHP 319
               HP
Sbjct: 292 VADHHP 297


>gi|288926256|ref|ZP_06420181.1| tyrosine recombinase XerD [Prevotella buccae D17]
 gi|288336947|gb|EFC75308.1| tyrosine recombinase XerD [Prevotella buccae D17]
          Length = 293

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 75/304 (24%), Positives = 133/304 (43%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L+ E   S+ T++SY  D R F  F            +   +    IR ++  
Sbjct: 3   IEKFLNYLKFELNRSERTVKSYGEDLRAFEEFFKNLDGHP----SWESVDSDIIRDWMES 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S+ R LS ++SF ++   R++  +    ++   KK   LP+ L E +   L
Sbjct: 59  MMDKGNNATSINRRLSALRSFYRFALARELVVKDPAHDVVGPKKKKPLPQFLKENEINAL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D+ +     E  + D R   I+   Y  G+R+SE   L   ++      L++ GK +K 
Sbjct: 119 LDSDM----WEDTYDDMRARTIVMTFYETGMRLSELTGLRDADVDFVNHELKVTGKRNKQ 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RI+P    +   + +Y  L       N     F   +G  +     +  +++    +   
Sbjct: 175 RIIPFGAELAHTLADYKSLRDATERGNCGK-FFLTDKGLAMQNAQVREIVKKHLSRVCTL 233

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T H LRH+FAT +L++   L S++ +LGH RLSTT+IYT+   +     +  +Y   
Sbjct: 234 KKRTPHVLRHTFATAMLNHEAGLESLKRLLGHARLSTTEIYTHTTFEQ----LKRVYTNA 289

Query: 318 HPSI 321
           HP  
Sbjct: 290 HPRA 293


>gi|56552810|ref|YP_163649.1| site-specific tyrosine recombinase XerC [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56544384|gb|AAV90538.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 307

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 115/304 (37%), Positives = 175/304 (57%), Gaps = 15/304 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            W Q L+     S  ++++Y     +F+ FL  +  + I   T+++    EIRAF++ RR
Sbjct: 19  QWEQYLQFSLRRSPHSIRAYMATVHRFISFLGNHRGDLIDKNTLQKTDIAEIRAFLAYRR 78

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              + + S+ R +SGI++FL++           I  ++  +    +PR L+ + A+ L  
Sbjct: 79  QSGLANSSVAREISGIRAFLRF------IGLDPIPAIKGARVKKGIPRPLSPEDAVALAK 132

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                 S +  WI+AR+ A+L LLYG GLRISEAL+LT + +   Q+TLR+ GK  KIRI
Sbjct: 133 EASEEASEQ--WIEARDLALLLLLYGSGLRISEALNLTCEILPL-QTTLRVVGKRSKIRI 189

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPLL  V++A+  Y  LCP+  +     P FRG +G  L+  V +R +R+ R +LGL   
Sbjct: 190 VPLLEKVKRAMETYVRLCPYAFSG--SQPFFRGAKGGVLSADVLRRTVRKARYHLGLDNK 247

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T H LRHSFA+HLL  G DLRS+Q +LGH  LS+TQIYT V++      ++++Y   HP
Sbjct: 248 ATPHALRHSFASHLLGRGADLRSLQELLGHASLSSTQIYTAVDAAR----LLDVYRAAHP 303

Query: 320 SITQ 323
              +
Sbjct: 304 RADK 307


>gi|260753463|ref|YP_003226356.1| site-specific tyrosine recombinase XerC [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552826|gb|ACV75772.1| integrase family protein [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 307

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 114/304 (37%), Positives = 175/304 (57%), Gaps = 15/304 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            W Q L+     S  ++++Y     +F+ FL  +  + I   T+++    EIRAF++ RR
Sbjct: 19  QWEQYLQFSLRRSPHSIRAYMATVHRFISFLGNHRGDLIDKNTLQKTDIAEIRAFLAYRR 78

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              + + S+ R +SGI++FL++           I  ++  +    +PR L+ + A+ L  
Sbjct: 79  QSGLANSSVAREISGIRAFLRF------IGLDPIPAIKGARVKKGIPRPLSPEDAVALAK 132

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                 S +  WI+AR+ A+L LLYG GLRISEAL+LT + +   Q+TLR+ GK  KIRI
Sbjct: 133 EASEEASEQ--WIEARDLALLLLLYGSGLRISEALNLTCEILPL-QTTLRVVGKRSKIRI 189

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPLL  V++A+  Y  LCP+  +     P FRG +G  L+  V +R +R+ R +LG+   
Sbjct: 190 VPLLEKVKRAMETYVRLCPYAFSG--SQPFFRGAKGGVLSADVLRRTVRKARYHLGVDNK 247

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T H LRHSFA+HLL  G DLRS+Q +LGH  LS+TQIYT V++      ++++Y   HP
Sbjct: 248 ATPHALRHSFASHLLGRGADLRSLQELLGHASLSSTQIYTAVDAAR----LLDVYRAAHP 303

Query: 320 SITQ 323
              +
Sbjct: 304 RADK 307


>gi|296447748|ref|ZP_06889663.1| tyrosine recombinase XerD [Methylosinus trichosporium OB3b]
 gi|296254725|gb|EFH01837.1| tyrosine recombinase XerD [Methylosinus trichosporium OB3b]
          Length = 314

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 81/303 (26%), Positives = 137/303 (45%), Gaps = 14/303 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L  ERG ++ TL +Y  D   ++  L     E +       ++   +RA+++  +
Sbjct: 12  AFLDMLAAERGAARNTLDAYRRDLEDYVAHLERTGAEPLG------VTTDGLRAYLATLQ 65

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           ++ +   +  R LS ++ F K+L   +   +     +   ++ +S P  L   +   L++
Sbjct: 66  SRGMTAATSARRLSALRQFHKFLYVDRYRADDPSTPLEGPRRQHSAPDILAMDEVERLLE 125

Query: 140 NVLLHTSHETKWID-----ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
                   E++        AR  A+L  LY  GLR+SE +SL         S   ++GKG
Sbjct: 126 TAREGLEDESRAAGERLRAARLYALLETLYATGLRVSELVSLPASAARSRDSFFTVRGKG 185

Query: 195 DKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRR 252
            K R+ P+ P  + A+  +  L       L     LF        L    F R ++    
Sbjct: 186 SKERLAPMTPRAKAALTVFRALLAKHAPGLADSHFLFPSDAAEGHLTRQAFARDLKTAAA 245

Query: 253 YLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             GL     + H LRH+FA+HLL NG DLR +Q +LGH  +STTQIYT+V  +     + 
Sbjct: 246 AAGLSARDISPHALRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHVLDERIRAMVR 305

Query: 312 EIY 314
           +++
Sbjct: 306 DLH 308


>gi|149184521|ref|ZP_01862839.1| phage integrase [Erythrobacter sp. SD-21]
 gi|148831841|gb|EDL50274.1| phage integrase [Erythrobacter sp. SD-21]
          Length = 299

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 110/304 (36%), Positives = 169/304 (55%), Gaps = 14/304 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            W  +L      S  T+++Y     + L  L  +  ++     I +LS  ++R  ++ RR
Sbjct: 9   AWHDHLAHGLRRSPHTVRAYHKAAERLLSRLHLHEFDQ-----IAELSAGKLRTHLASRR 63

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           +  + + S  R LS +KSF+ + + +    +++   MR  +    LPR +    A+ L +
Sbjct: 64  SDGLSNASAARELSALKSFIGFARAQAGHEQTDAPRMRGPRLKKGLPRPVTPDDAIGLAE 123

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            +         W+ AR+ A+L LLYG G+RISEALSL   ++   + TL + GKG+K R+
Sbjct: 124 TIEELAVDG--WVGARDRAVLLLLYGAGMRISEALSLKGGDLPLGE-TLTVTGKGNKQRV 180

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPLLP VR ++  Y   CP+ L    + PLFRG++G  L+ GV Q+   + RR LGLP +
Sbjct: 181 VPLLPLVRDSVATYVKQCPWPL--GPKDPLFRGVKGGVLSQGVVQKATARARRALGLPDT 238

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T H LRHSFATHLL  G DLRS+Q +LGH  L +TQIYT V++ +    +++ Y   HP
Sbjct: 239 ATPHALRHSFATHLLGAGADLRSLQELLGHASLGSTQIYTKVDAAS----LLDTYRNAHP 294

Query: 320 SITQ 323
              +
Sbjct: 295 RERE 298


>gi|289643920|ref|ZP_06476023.1| tyrosine recombinase XerD [Frankia symbiont of Datisca glomerata]
 gi|289506249|gb|EFD27245.1| tyrosine recombinase XerD [Frankia symbiont of Datisca glomerata]
          Length = 323

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 91/316 (28%), Positives = 146/316 (46%), Gaps = 22/316 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L +L  ERGL++ ++ +Y  D R++L  L+        ++++  +  +E+  F + 
Sbjct: 9   VERFLDHLAGERGLARNSVLAYRRDLRRYLEHLSLR-----GVRSLADVDESEVAEFAAT 63

Query: 78  RRTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            R        +   S+ R L  ++S  ++  +    T      +R       LPRAL   
Sbjct: 64  LREGAGEHPPLAASSVARMLVSVRSLHRFAAREGEVTSDVSRPVRPPTPPRRLPRALTVD 123

Query: 133 QALTLVDNVLLHTSHETKWIDA------RNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           Q + ++       +       A      R  A+L LLYG G RISEA+ L   ++  D +
Sbjct: 124 QVVAVLRAASTSAAGGPGGDPAEGSRQLRAVALLELLYGTGARISEAVGLDVDDLDLDAA 183

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQR 245
           ++R+ GKG + R+VPL     +A+  Y       L      P +F   RG  L+      
Sbjct: 184 SVRLLGKGGRARVVPLGRYAGEALAAYLVRARPVLASRRASPAVFLSRRGTRLSRQSAWT 243

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +R      G+    + H LRHSFATHLL  G D+R +Q +LGH  +STTQIYT V    
Sbjct: 244 VLRTAAVAAGVE-GVSPHVLRHSFATHLLDGGADVRVVQELLGHASVSTTQIYTLVT--- 299

Query: 306 GGDWMMEIYDQTHPSI 321
             D + E+Y  +HP  
Sbjct: 300 -VDRLREVYATSHPRA 314


>gi|86751622|ref|YP_488118.1| Phage integrase [Rhodopseudomonas palustris HaA2]
 gi|86574650|gb|ABD09207.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris HaA2]
          Length = 310

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 78/302 (25%), Positives = 139/302 (46%), Gaps = 4/302 (1%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L K   ++L +  +ER LS  TLQ+Y  D   F  ++     +         +    +RA
Sbjct: 3   LSKPIVSFLDHCSVERQLSDHTLQAYGYDLADFAAWVGTRRRKDKAFSAGAPIETDHLRA 62

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEK 132
           ++     +K+   +++R L+ ++SF +YL+ R  T  +     R  L K   LPR L+  
Sbjct: 63  YLEHMTERKLSAATVRRRLACLRSFFRYLEDRG-TMPNPFDGWRLKLPKRKRLPRTLSRD 121

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAI-LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           +   L+ +     +      ++ +    + L+   G+RI E   +   ++  D + +RI 
Sbjct: 122 ETTQLLKSARAPGAARHAAPESPSLCTEIRLMIATGIRIGELCKIASTDVSSDGAAIRIH 181

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG + R+V +  +  +A L    +      L    PLF    G  L P  F+  +R   
Sbjct: 182 GKGSRDRMVYVTDNGLRAELRKLAVL-RQRTLGGDGPLFLNRNGDKLRPHSFRAKLRNFA 240

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+    T H LRH+ AT L+ +G D+R +Q +LGH  ++TT+IYT+V+ +     + 
Sbjct: 241 GQAGVRRRVTPHMLRHTAATLLIESGVDIRIVQRLLGHSSIATTEIYTHVSDEALRSTLA 300

Query: 312 EI 313
             
Sbjct: 301 RA 302


>gi|169830712|ref|YP_001716694.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637556|gb|ACA59062.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 300

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 92/302 (30%), Positives = 149/302 (49%), Gaps = 14/302 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +  + +L+ L  E+  S  TL +Y  D R    FL     E+I  + +  L+   +R 
Sbjct: 4   LQEVIREFLRYLRAEKDASPETLAAYRSDLRPLEDFL---FRERIAPE-LANLTTPVLRR 59

Query: 74  FISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +    + + K+   SL+R +   +SF +YL +++      +  +R  K+ + +P  L E+
Sbjct: 60  YFIWLQEERKLKAASLRRKIHCFRSFFRYLAEQEYIPGDPMRKIRPPKEPDRVPIYLKEE 119

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L    L    H       R+  IL+LL  CGLR SE L L   ++     TLR++G
Sbjct: 120 ELKWL----LTAPGHLGGPYHLRDKLILHLLAYCGLRRSELLRLDWDDVDLGAGTLRVRG 175

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG + R++PL+P +++ + EY        N      LF G  G  +N     R  ++  R
Sbjct: 176 KGKRERLIPLIPELQQILWEYLQTRLPLENR----ALFLGREGGRMNKDALTRLFKRYVR 231

Query: 253 YLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             GL P   T H LRHSFAT LL  G D+ +IQ ++GH  L++T+IY + +SK   + + 
Sbjct: 232 MAGLDPAVITPHKLRHSFATLLLEKGTDVFTIQELMGHADLASTRIYAHCSSKRLREAVE 291

Query: 312 EI 313
            I
Sbjct: 292 RI 293


>gi|28493064|ref|NP_787225.1| integrase/recombinase [Tropheryma whipplei str. Twist]
 gi|28476104|gb|AAO44194.1| integrase/recombinase [Tropheryma whipplei str. Twist]
          Length = 349

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 87/349 (24%), Positives = 151/349 (43%), Gaps = 49/349 (14%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
            +  ++  +   +    ++E GLS  TLQ+Y      +L +L     ++     + +++ 
Sbjct: 13  AIPPDIKPDFDWFFPFAKLELGLSDATLQTYRNSLGIYLSWLGEQGTQR-----LSEVNS 67

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             I  F+  R+       +L  +++ +++F ++L      T +    ++  K   +LP  
Sbjct: 68  NAIERFLEYRQRHTRK-STLANTVAALRTFHRHLVLEGRQTLNPTEKLQQPKVPKTLPHP 126

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQST 187
           L+  + + L+     + + E   I  R+ A++ +LYG G RISEA+SL      + DQ+ 
Sbjct: 127 LSLDEIINLLKAADTNQARE---ISLRDRALIEVLYGTGARISEAVSLNVNAFAESDQNL 183

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-------------------- 227
           LR+ GKG+K R+V      R A+  Y       L     +                    
Sbjct: 184 LRLTGKGNKQRMVLFGSYARNAVDNYLQHSRPKLLARSHVYRNITDASTLKYRPTSSTIG 243

Query: 228 ---------------PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                           LF   RGK L        IR+L     +    + H+LRHSFATH
Sbjct: 244 DAEDGVLTATAAGVPWLFLSNRGKRLTRQQAGNIIRKLGEAAEIGRYISPHSLRHSFATH 303

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           +L  G D+R++Q +LGH  ++TT +YT V      D + E+Y  +HP  
Sbjct: 304 MLQAGADIRTVQELLGHSSINTTSVYTKVT----IDSLREVYATSHPRA 348


>gi|56416387|ref|YP_153461.1| integrase/recombinase [Anaplasma marginale str. St. Maries]
 gi|56387619|gb|AAV86206.1| integrase/recombinase [Anaplasma marginale str. St. Maries]
          Length = 312

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 83/320 (25%), Positives = 135/320 (42%), Gaps = 25/320 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L++L   R +S  T  SY  D      FL       +        S  ++RA++  
Sbjct: 7   LDAFLESLLSGRCVSPNTSSSYRSDLEDLAEFLGRRNLRMV------DASAADLRAYVRS 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             ++     ++ R +S I+    +L   +I       N+ + K    LP+ L   +   L
Sbjct: 61  LNSRGYSPATVARRISAIRGLYGFLYGDRIIDGDPAANLDSCKLGRPLPKVLTVDEVDKL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-------IMDDQSTLRI 190
           +       S E +       AI+ +LY  G+RISE ++L   +          D   L I
Sbjct: 121 LCAAGSDLSVEGRRTA----AIVNILYSSGVRISELINLGFYDIESMLKEQRSDVGHLVI 176

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKP-LNPGVFQRYI 247
           +GK  + R++ L      +I+ Y  +    +    +    LF G +    ++     + +
Sbjct: 177 KGKAGRERLILLNEVAIASIVAYLAVRDHFIVGQKSESRWLFPGAKFDQCISRQRVGQLL 236

Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           + L    G+ P   + H LRHSFATHLL+NG ++  IQ +LGH  LSTTQIYT V +   
Sbjct: 237 KALAIVAGVDPKRISPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYVAN--- 293

Query: 307 GDWMMEIYDQTHPSITQKDK 326
            D + E     HP      K
Sbjct: 294 -DRLKEALQTFHPFAKSPPK 312


>gi|222474757|ref|YP_002563172.1| Tyrosine recombinase (xerD) [Anaplasma marginale str. Florida]
 gi|255003855|ref|ZP_05278656.1| Tyrosine recombinase (xerD) [Anaplasma marginale str. Virginia]
 gi|222418893|gb|ACM48916.1| Tyrosine recombinase (xerD) [Anaplasma marginale str. Florida]
          Length = 312

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 83/322 (25%), Positives = 136/322 (42%), Gaps = 25/322 (7%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +    +L++L   R +S  T  SY  D      FL       +        S  ++RA++
Sbjct: 5   RHLDAFLESLLSGRCVSPNTSSSYRSDLENLAEFLGRRNLRMV------DASAADLRAYV 58

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
               ++     ++ R +S I+    +L   +I       N+ + K    LP+ L   +  
Sbjct: 59  RSLNSRGYSPATVARRISAIRGLYGFLYGDRIIDGDPAANLDSCKLGRPLPKVLTVDEVD 118

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-------IMDDQSTL 188
            L+       S E +       AI+ +LY  G+RISE ++L   +          D   L
Sbjct: 119 KLLCAAGSDLSVEGRRTA----AIVNILYSSGVRISELINLGFYDIESMLKEQRSDVGHL 174

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKP-LNPGVFQR 245
            I+GK  + R++ L      +I+ Y  +    +    +    LF G +    ++     +
Sbjct: 175 VIKGKAGRERLILLNEVAIASIVAYLAVRDHFIVGQKSESRWLFPGAKFDQCISRQRVGQ 234

Query: 246 YIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            ++ L    G+ P   + H LRHSFATHLL+NG ++  IQ +LGH  LSTTQIYT V + 
Sbjct: 235 LLKALAIVAGVDPKRISPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYVAN- 293

Query: 305 NGGDWMMEIYDQTHPSITQKDK 326
              D + E     HP      K
Sbjct: 294 ---DRLKEALQTFHPFAKSPPK 312


>gi|238063996|ref|ZP_04608705.1| tyrosine recombinase xerD [Micromonospora sp. ATCC 39149]
 gi|237885807|gb|EEP74635.1| tyrosine recombinase xerD [Micromonospora sp. ATCC 39149]
          Length = 336

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 87/328 (26%), Positives = 147/328 (44%), Gaps = 24/328 (7%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            +  L +  + +L +L +ERGLS  TL SY  D  ++L  L         I  +  ++  
Sbjct: 17  PAPALRRAVRGYLDHLTVERGLSANTLASYRRDLERYLATLT-----DAGIGDLASVAAG 71

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIK-----SFLKYLKKRKITTESNILNMRNLKKSNS 124
            + A +++ R    G   L  S +           ++  +  +       ++R       
Sbjct: 72  VVEAHLARLRAGDDGHPPLAVSSAARAASAVRGLHRFALREGLAGADPSRDVRPPAPPRR 131

Query: 125 LPRALNEKQALTLVD-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           LPRAL   Q + L++    +  + +   +  R+ A+L  LYG G RISEA+     ++  
Sbjct: 132 LPRALAVDQVVRLLETAGPVTAAGDGAPLALRDRALLEFLYGTGARISEAVGAAIDDLDG 191

Query: 184 ---DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPL 238
               ++T+ ++GKG + R+VP+     +A+  +       L         +F  +RG  L
Sbjct: 192 LDTGEATVLLRGKGGRSRLVPVGGYAAEALRAWLVRGRPALVAAGRGTPAVFVNVRGGTL 251

Query: 239 NPGVFQRYIRQLRRYLGLPLS----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
                   +R+     GLP+      + HTLRHSFATHLL  G D+R +Q +LGH  ++T
Sbjct: 252 TRQGAWTILRRAAERAGLPVDGANAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTT 311

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           TQ+YT V  +     + E+Y   HP   
Sbjct: 312 TQVYTLVTVER----LREVYATAHPRAR 335


>gi|319899487|ref|YP_004159584.1| integrase/recombinase XerD [Bartonella clarridgeiae 73]
 gi|319403455|emb|CBI77026.1| integrase/recombinase XerD [Bartonella clarridgeiae 73]
          Length = 312

 Score =  222 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 77/312 (24%), Positives = 139/312 (44%), Gaps = 16/312 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L+ +  ERG S  TL +Y+ D +          +      +       ++   +S 
Sbjct: 7   IDRFLEMMSAERGASVRTLFAYQHDLQW------AQNKLSSYSLSFFSAQREDLINLLSL 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            +T      S  R LS ++ F ++L    +  +    ++ + ++   LP+ ++E     L
Sbjct: 61  MQTAGCAATSQARRLSTLRQFFQFLYAEGLRGDDPSSDIDSPRQGRPLPKIISEDAVTKL 120

Query: 138 VDNVLLHTSHETKWIDARNSAI-----LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +D   L T            A+     L +LY  GLRISE +SL  Q +   +  + ++G
Sbjct: 121 LDFAQLETDQAEYGSQEYFRALRFQVLLEMLYATGLRISELVSLPVQAVRRKEQFILVRG 180

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG+K R+V L    R+ + ++  L     +               +      R ++ L +
Sbjct: 181 KGEKERVVLLSEKARQILSKWLVLRDQGKDAKSFYLFPARSSTGYIARQFVARGLKDLAK 240

Query: 253 YLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             G+   + + H LRH+FA+HLL NG DLR++Q +LGH  +STTQ+YT+V        + 
Sbjct: 241 RAGIQSENFSPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQVYTHVLEAR----LH 296

Query: 312 EIYDQTHPSITQ 323
            + ++ HP + Q
Sbjct: 297 RLVNEHHPLVDQ 308


>gi|113866150|ref|YP_724639.1| site-specific tyrosine recombinase XerC [Ralstonia eutropha H16]
 gi|113524926|emb|CAJ91271.1| Site-specific recombinase XerC/Integrase [Ralstonia eutropha H16]
          Length = 359

 Score =  222 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 86/313 (27%), Positives = 144/313 (46%), Gaps = 29/313 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L   R L++ TL SY  D R      A Y         +  L    IR F ++  
Sbjct: 31  RYLDWLRGSRKLAEHTLTSYSRDLRVLQGHAARYAPG----VALLALQTHHIRNFAARLH 86

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNILNMRNLKKSNSLPRALNEKQALTLV 138
              +   S+ R+LS  + F ++  +     T + +  +R  +  ++LP+AL+ + A+ LV
Sbjct: 87  GAGLVGTSIARTLSAWRGFFQWAARHGHGVTVNPVDGVRAPRSGHALPKALSVEHAVALV 146

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-----------ST 187
            +        T     R+ A+  L Y  GLR+SE + L  +    D            + 
Sbjct: 147 AH-----PAGTDAQALRDQAVHELFYSSGLRLSELVQLDLRYADADGYRSSGWLDLAGAE 201

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN----IQLPLFRGIRGKPLNPGVF 243
           + + GKG + R VP+     +A+  +  +    L           LF G RG+ L+    
Sbjct: 202 VTVTGKGSRQRSVPVGSKAIEALRAWLAVRDTLLRPGALPEDAHALFLGPRGRRLSMRTV 261

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           Q  ++Q     G+P     H LRHSFATH+L + GDLR++Q +LGH  +STTQ+YT ++ 
Sbjct: 262 QLRLKQQALRAGVPADVHPHMLRHSFATHVLQSSGDLRAVQEMLGHASISTTQVYTALDF 321

Query: 304 KNGGDWMMEIYDQ 316
           ++    + ++YD+
Sbjct: 322 QH----LAKVYDK 330


>gi|148272560|ref|YP_001222121.1| integrase/recombinase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830490|emb|CAN01425.1| integrase/recombinase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 298

 Score =  222 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 78/308 (25%), Positives = 136/308 (44%), Gaps = 11/308 (3%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           + +   +  +++ ERG +  T+++Y  D R               + T   L    +R +
Sbjct: 1   MDDIAAFGTSMDRERGSAAHTVRAYSADLRDLAAHAGRQ-----GVTTSAALDLEVLRDW 55

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + +    ++   +L R  + ++ F  +L +         + ++  +  + LPR L  +Q 
Sbjct: 56  LWRGSQARLAPATLARRSAAVRGFGAWLLRTGRVEADPAVRLKAPRAGSHLPRVLAREQM 115

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
            + +   L   + E      R+ A++ LLY   LR+SE   L   ++   + T+R+ GKG
Sbjct: 116 -SALLARLAARAAEDDPAALRDLAVIELLYASALRVSELTGLELGDVDASRLTVRVVGKG 174

Query: 195 DKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           D+ R+VP      +A+  Y     P  ++      LF G RG  L        +  L   
Sbjct: 175 DRERVVPFGVPAAEALDAYVARGRPGLVSPRTGTALFLGARGGRLGSRAVYGLVASLLAD 234

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +        H LRH+ ATHLL  G DLR++Q +LGH  L TTQIYT+V+ +     +   
Sbjct: 235 IPGSGPQGPHALRHTAATHLLDGGADLRTVQEMLGHASLGTTQIYTHVSIER----LQRS 290

Query: 314 YDQTHPSI 321
           Y+  HP  
Sbjct: 291 YEGAHPRA 298


>gi|167037531|ref|YP_001665109.1| tyrosine recombinase XerD [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320115946|ref|YP_004186105.1| tyrosine recombinase XerD [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166856365|gb|ABY94773.1| tyrosine recombinase XerD [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319929037|gb|ADV79722.1| tyrosine recombinase XerD [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 290

 Score =  222 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 79/302 (26%), Positives = 139/302 (46%), Gaps = 19/302 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L   + LSK TL+SY  D +QFL +L         ++       + I  ++   +
Sbjct: 8   EFLDFLTKNKKLSKNTLESYNRDIKQFLNYLEEIGINYYNVK------KSTILNYLYYLK 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +     ++ R++S +K+F  YL  +K   E     +   K     P AL  +Q      
Sbjct: 62  KKGKSQATVSRNVSSLKAFYHYLFMKKKIEEDPTYMINTPKVEKKPPTALTVEQV----- 116

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           ++LL           R+ A++ LLY  GL++SE +SL  +++      + I+   +K R+
Sbjct: 117 DMLLSIDFGNDEKGLRDKALIELLYATGLKVSEVISLKLEDVNLSYGYVVIRS--NKERV 174

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +P+     +A+  Y +        N +  LF  +RG+ L      + IR+    +     
Sbjct: 175 IPIGSHAIEALKNYIEKG--RKAKNGENTLFLNLRGEKLTRQGCWKIIREYTDKINPGFP 232

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T +TLR SFA H+L NG D+R++Q +LG+     T + TN+ S      + E+Y++ HP
Sbjct: 233 VTPNTLRQSFAQHMLQNGADIRAVQEMLGYQ----TDLNTNLLSLISKSKIKEVYNKFHP 288

Query: 320 SI 321
             
Sbjct: 289 RA 290


>gi|148258743|ref|YP_001243328.1| tyrosine recombinase XerD subunit [Bradyrhizobium sp. BTAi1]
 gi|146410916|gb|ABQ39422.1| tyrosine recombinase XerD subunit [Bradyrhizobium sp. BTAi1]
          Length = 308

 Score =  222 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 136/314 (43%), Gaps = 22/314 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  +  E+G  + TL +Y  D      FLA          +        +R +++   T
Sbjct: 4   FLDMMAAEQGAGQNTLDAYRRDLSDLSEFLAGK------ANSFTTADTQALRDYLADLDT 57

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     S+ R LS ++   ++L    I ++     +   K+   LP+ L+      ++  
Sbjct: 58  RGFKSSSVARRLSAMRHLFRFLLSEHIRSDDPAAILSGPKRGRPLPKVLSIGDVDRMLTR 117

Query: 141 VL-----LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
                     S   +    R   +L +LY  GLR+SE ++L       D   + ++GKG+
Sbjct: 118 AKELTETADASPAQRLRALRLYCLLEVLYATGLRVSELVALPRTAARHDARMIVVRGKGN 177

Query: 196 KIRIVPLLPSVRKAILEYYDLCP-----FDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQ 249
           K R+VPL  + R+A+ +Y             +      LF        L    F R +++
Sbjct: 178 KERLVPLNQASRQAMADYLAALDALKPEKKASATFGKWLFPSFGESGHLTRQHFARDLKE 237

Query: 250 LRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           L    GLP    + H LRH+FA+HLL NG DLR +Q++LGH  +STTQIYT+V  +    
Sbjct: 238 LAVASGLPARLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER--- 294

Query: 309 WMMEIYDQTHPSIT 322
            +  +    HP   
Sbjct: 295 -LKSLVRDLHPLAE 307


>gi|325266806|ref|ZP_08133478.1| tyrosine recombinase XerD [Kingella denitrificans ATCC 33394]
 gi|324981738|gb|EGC17378.1| tyrosine recombinase XerD [Kingella denitrificans ATCC 33394]
          Length = 289

 Score =  222 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 78/307 (25%), Positives = 144/307 (46%), Gaps = 20/307 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           + +   +L++L ++  L+  TL++Y  D  +    LA            +     ++   
Sbjct: 1   MPDIDRFLEHLWLQERLAHNTLEAYRHDLHKVAERLAAAQ------TDWQHADNRQLADA 54

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +     Q     +  R+LS +K + +YL   +   ++   +++  K   SLP+ ++E Q 
Sbjct: 55  VYAADEQ---PSTQSRTLSAVKKWYQYLNDTQHRHDNPSRDLKAAKIPRSLPQPVSEAQI 111

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L     L           R+ A+L L+Y  GLR+SEA+ L+   +   +  +   GKG
Sbjct: 112 DAL-----LAAPDTDTLHGLRDKALLELMYATGLRVSEAVKLSLNELDLTRGMVNTIGKG 166

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K RIVPL       +  Y      +L        +F   +   ++  +  + + +  + 
Sbjct: 167 NKQRIVPLGEVAADWLERYLHTARPELLKGQACAYVFVSQKKVGISRQLAWQVVAKYAQQ 226

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +GLP   + H LRH+FATHL+++G DLR +Q +LGH  L+TT+IYT+V +      + ++
Sbjct: 227 VGLPA-LSPHGLRHAFATHLVNHGADLRVVQLLLGHESLTTTEIYTHVANAR----LKQV 281

Query: 314 YDQTHPS 320
            +Q HP 
Sbjct: 282 VEQYHPR 288


>gi|225853465|ref|YP_002733698.1| site-specific tyrosine recombinase XerD [Brucella melitensis ATCC
           23457]
 gi|256045632|ref|ZP_05448510.1| site-specific tyrosine recombinase XerD [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256112356|ref|ZP_05453277.1| site-specific tyrosine recombinase XerD [Brucella melitensis bv. 3
           str. Ether]
 gi|225641830|gb|ACO01744.1| tyrosine recombinase XerD [Brucella melitensis ATCC 23457]
 gi|326410027|gb|ADZ67092.1| site-specific tyrosine recombinase XerD [Brucella melitensis M28]
 gi|326539743|gb|ADZ87958.1| tyrosine recombinase XerD [Brucella melitensis M5-90]
          Length = 307

 Score =  222 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 90/312 (28%), Positives = 138/312 (44%), Gaps = 16/312 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             +N+L+ +  ERG ++ TL+SY  D       LA           + +     IR  + 
Sbjct: 6   AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKG------VNLAEAETGHIRMTLD 59

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               Q     S  R LS ++ F ++L       +     +   KK   LP+ ++ +    
Sbjct: 60  TMAAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGK 119

Query: 137 LVDNVLLHTSHETKW----IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           L+D   L  +   +        R  A+L  LY  GLR+SE + L       D   L ++G
Sbjct: 120 LLDRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRG 179

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLR 251
           KG K R+VPL    R A+ ++  L       +    LF        L   VF R ++ L 
Sbjct: 180 KGSKDRMVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLA 239

Query: 252 RYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              GL  S  + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V  +     +
Sbjct: 240 ARAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER----L 295

Query: 311 MEIYDQTHPSIT 322
            ++  + HP   
Sbjct: 296 HKLVSEHHPLAD 307


>gi|17986324|ref|NP_538958.1| site-specific tyrosine recombinase XerD [Brucella melitensis bv. 1
           str. 16M]
 gi|260562936|ref|ZP_05833422.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. 16M]
 gi|265992055|ref|ZP_06104612.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. Rev.1]
 gi|265993791|ref|ZP_06106348.1| tyrosine recombinase xerD [Brucella melitensis bv. 3 str. Ether]
 gi|265999264|ref|ZP_06111622.1| tyrosine recombinase xerD [Brucella melitensis bv. 2 str. 63/9]
 gi|34222943|sp|Q8YJP2|XERD_BRUME RecName: Full=Tyrosine recombinase xerD
 gi|17981909|gb|AAL51222.1| integrase/recombinase xerd [Brucella melitensis bv. 1 str. 16M]
 gi|260152952|gb|EEW88044.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. 16M]
 gi|262764772|gb|EEZ10693.1| tyrosine recombinase xerD [Brucella melitensis bv. 3 str. Ether]
 gi|263003121|gb|EEZ15414.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. Rev.1]
 gi|263092931|gb|EEZ17106.1| tyrosine recombinase xerD [Brucella melitensis bv. 2 str. 63/9]
          Length = 309

 Score =  222 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 90/312 (28%), Positives = 138/312 (44%), Gaps = 16/312 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             +N+L+ +  ERG ++ TL+SY  D       LA           + +     IR  + 
Sbjct: 8   AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKG------VNLAEAETGHIRMTLD 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               Q     S  R LS ++ F ++L       +     +   KK   LP+ ++ +    
Sbjct: 62  TMAAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGK 121

Query: 137 LVDNVLLHTSHETKW----IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           L+D   L  +   +        R  A+L  LY  GLR+SE + L       D   L ++G
Sbjct: 122 LLDRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRG 181

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLR 251
           KG K R+VPL    R A+ ++  L       +    LF        L   VF R ++ L 
Sbjct: 182 KGSKDRMVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLA 241

Query: 252 RYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              GL  S  + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V  +     +
Sbjct: 242 ARAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER----L 297

Query: 311 MEIYDQTHPSIT 322
            ++  + HP   
Sbjct: 298 HKLVSEHHPLAD 309


>gi|284045117|ref|YP_003395457.1| integrase [Conexibacter woesei DSM 14684]
 gi|283949338|gb|ADB52082.1| integrase family protein [Conexibacter woesei DSM 14684]
          Length = 313

 Score =  222 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 92/328 (28%), Positives = 143/328 (43%), Gaps = 22/328 (6%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEK 57
           M+   + E  S  +    +  L  LE +   RG ++ T  +Y  D  QF+ +   +    
Sbjct: 1   MKNKAMSEQPSAPISDAWRRALALLESDLRRRGAAEKTRHAYAVDGGQFVRWADAHR--- 57

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
                   ++   +R + +          ++ R L+ ++S  + L +     ++    + 
Sbjct: 58  ---LAPADVNPRALRRYAAGLTEAGQAPTTVGRKLASLRSLFRTLVEHGELQQNPADLLS 114

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             +K+  LP  L   +   L+D +   T+     +  R+ A+  L Y  GLR  E + L 
Sbjct: 115 APRKAQRLPYVLKPVEVAALLDRIPADTA-----LALRDRALFELAYASGLRAEELVMLD 169

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGK 236
             +I  D   +R++GKG K RIVP      KAI  Y D     L        LF    G+
Sbjct: 170 VGSIEFDGERVRVEGKGAKTRIVPAGEPALKAIARYLDRARPALATAESDGALFLSKSGR 229

Query: 237 PLNPGVFQRYIRQLRRYL-GLPL--STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            L+    +R +R   R   G+      + H LRHSFATHLL NG DLRSIQ +LGH  +S
Sbjct: 230 RLSTSDVRRRLRVWARQAAGVSTAGGVSPHALRHSFATHLLENGADLRSIQELLGHASIS 289

Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           TTQ+YT V S      +   Y  +HP  
Sbjct: 290 TTQVYTRVESAR----LRSAYANSHPRA 313


>gi|296283728|ref|ZP_06861726.1| integrase [Citromicrobium bathyomarinum JL354]
          Length = 304

 Score =  222 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 86/309 (27%), Positives = 140/309 (45%), Gaps = 24/309 (7%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  +++L  L ++RG +  TL +Y  D    +  +     E  T   + +L         
Sbjct: 4   RAIEDFLAALAVDRGAAANTLAAYRRDLEGAVGIVG--PLEDATRTDLARLGAAW----- 56

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                  +   ++ R  S ++ F  +L+   + +++    + +  K  SLP+ L+  Q  
Sbjct: 57  -----ADLAPATVARKASALRQFFGFLEDEGLRSDNPSAALPSPTKRRSLPKILDHAQVE 111

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L          E      R  A++ LLYG GLR SE ++L    +  D   L I GKG 
Sbjct: 112 ALFAQAEREA-EEGDPAALRLLAMIELLYGSGLRASELVTLPLSAVPRDAPFLTITGKGG 170

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R+VPL    R  +  +  + P          LF   RGK L      + ++ L    G
Sbjct: 171 KERLVPLGTRARAVLSRWLAVRP-----EGSPWLFPS-RGKHLTRIRLYQLLKALAERSG 224

Query: 256 L-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           + P   + H LRH+FATHLL  G DLR++Q++LGH  ++TTQIYT+V S      ++ + 
Sbjct: 225 IDPAKISPHVLRHAFATHLLEGGADLRALQTLLGHADIATTQIYTHVESAR----LVALV 280

Query: 315 DQTHPSITQ 323
           ++ HP   Q
Sbjct: 281 NERHPLADQ 289


>gi|125973246|ref|YP_001037156.1| site-specific tyrosine recombinase XerC [Clostridium thermocellum
           ATCC 27405]
 gi|256003724|ref|ZP_05428712.1| integrase family protein [Clostridium thermocellum DSM 2360]
 gi|281417446|ref|ZP_06248466.1| integrase family protein [Clostridium thermocellum JW20]
 gi|125713471|gb|ABN51963.1| phage integrase [Clostridium thermocellum ATCC 27405]
 gi|255992285|gb|EEU02379.1| integrase family protein [Clostridium thermocellum DSM 2360]
 gi|281408848|gb|EFB39106.1| integrase family protein [Clostridium thermocellum JW20]
 gi|316940523|gb|ADU74557.1| integrase family protein [Clostridium thermocellum DSM 1313]
          Length = 330

 Score =  222 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 86/316 (27%), Positives = 157/316 (49%), Gaps = 27/316 (8%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-------------EKIT 59
           E     +++L  +E  RG SK T+  Y  D R F  F+  +               + + 
Sbjct: 8   EAPAIIKDFLSYMETIRGKSKNTIHEYYYDLRLFFRFMKIHFGLEDSKKDFDSIDIKDMD 67

Query: 60  IQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMR 117
           I  I++++ ++I +F+S   R +     S  R ++ I+SF  YL  + K+  ++    + 
Sbjct: 68  IDVIKKITLSDIYSFMSFLSRERDNTASSRARKVASIRSFFNYLTNKAKLLEQNPAAELE 127

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           + K    LPR LN +++  L+ ++              + AI+ L   CGLR+SE +++ 
Sbjct: 128 SPKIMKRLPRYLNIEESKRLLGSIDGEHKER-------DFAIITLFLNCGLRLSELVNIN 180

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
             NI +D   L + GKG+K R + L  + +KA+  Y  + P D  +  +  LF   R + 
Sbjct: 181 LSNIKND--VLTVVGKGNKERTIYLNAACKKALDAYLKVRPVD-GVKDKNALFLSSRKQR 237

Query: 238 LNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTT 295
           ++    Q  +++  +  GL P   + H LRH+ AT +  +G  D+R++Q ILGH  ++TT
Sbjct: 238 ISNKTVQHIVKKYIKAAGLDPERYSTHKLRHTAATLMYKHGNVDIRALQEILGHESIATT 297

Query: 296 QIYTNVNSKNGGDWMM 311
           +IYT+V+S+   + + 
Sbjct: 298 EIYTHVDSQQLKNAVE 313


>gi|269958271|ref|YP_003328058.1| tyrosine recombinase [Anaplasma centrale str. Israel]
 gi|269848100|gb|ACZ48744.1| tyrosine recombinase [Anaplasma centrale str. Israel]
          Length = 312

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 82/317 (25%), Positives = 134/317 (42%), Gaps = 25/317 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L   R +S  T  SY  D      FL       +        S  ++RA++    +
Sbjct: 10  FLEYLVSGRCVSPNTSSSYRSDLEDLAEFLGRRNLRMV------DASAADLRAYVRSLNS 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     ++ R ++ I+    +L   +I       N+ + K    LP+ L   +   L+  
Sbjct: 64  RGYSPATISRRVAAIRGLYGFLYGDRIIDGDPAANLDSCKLGRPLPKVLTVDEVDKLLRA 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-------IMDDQSTLRIQGK 193
                S E +       AI+ +LY  G+RISE ++L   +          D   L I+GK
Sbjct: 124 AGSDLSVEGRRTA----AIVNILYSSGVRISELINLGFYDIESMLKEQRSDVGHLVIKGK 179

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKP-LNPGVFQRYIRQL 250
             + R++ L      +I+ Y  +    +    +    LF G +    ++     + ++ L
Sbjct: 180 AGRERLILLNEVAIASIVAYLAVRDHFIVGQKSESRWLFPGAKFDQCISRQRVGQLLKAL 239

Query: 251 RRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
               G+ P   + H LRHSFATHLL+NG ++  IQ +LGH  LSTTQIYT V +    D 
Sbjct: 240 AIVAGVDPKRISPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYVAN----DR 295

Query: 310 MMEIYDQTHPSITQKDK 326
           + E     HP      K
Sbjct: 296 LKEALQTFHPFAKSPPK 312


>gi|330836614|ref|YP_004411255.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374]
 gi|329748517|gb|AEC01873.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374]
          Length = 310

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 88/321 (27%), Positives = 149/321 (46%), Gaps = 29/321 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   +   +GLS  T ++Y  D   F  FL  ++       ++  +S ++IR+F+  
Sbjct: 6   FEEYCDYIRNVKGLSAHTEKAYRHDLFVFGEFLEKFSI------SVHDVSPSDIRSFLVW 59

Query: 78  R--RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
              R +     +++R  S I  F  Y+ +R    ++ +  +     S  LP  L + +  
Sbjct: 60  LPERRKDFSPGTVQRLKSTINGFYTYVVRRGKIEKNPVALISLRSASRRLPTVLEKSETE 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L++           +   R+  IL LLY  G R SE L++   ++   Q  + I GKG 
Sbjct: 120 RLLNLP------WNDFSSLRDVLILNLLYSTGCRRSELLAIDVDDLETGQERILIHGKGG 173

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDL-----------NLNIQLPLFRGIRGKPLNPGVFQ 244
           + R V L P V K + +Y       L           + N  L      +GK L+ G+  
Sbjct: 174 RERYVFLTPRVTKLLGKYLSERKELLSRLEPAEKEGADWNALLLSNGRRKGKRLSTGIIT 233

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
               + +R L +  + T H LRH+FATHLL N   +R++Q +LGH  LSTTQIYT+V+++
Sbjct: 234 SIFGKYKRELEIHKAFTPHVLRHTFATHLLDNDAGIRTVQELLGHVNLSTTQIYTHVSAE 293

Query: 305 NGGDWMMEIYDQTHPSITQKD 325
                + ++YD  HP   +K+
Sbjct: 294 R----LRKVYDACHPHGRKKE 310


>gi|332982026|ref|YP_004463467.1| integrase family protein [Mahella australiensis 50-1 BON]
 gi|332699704|gb|AEE96645.1| integrase family protein [Mahella australiensis 50-1 BON]
          Length = 287

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 71/282 (25%), Positives = 140/282 (49%), Gaps = 13/282 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              + + L  ER ++  T++ Y  D RQ+L F    T+ +  +Q +  LS   I  ++  
Sbjct: 7   IDGYKRYLVEERKMTSNTVECYLTDVRQYLGF----TDGQAALQNM--LSSDAIAEYMDY 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            + +     ++ R +S IKSF K++ ++  +     ++++  K    +P  L+  +   L
Sbjct: 61  LKQKGCISTTMSRKISSIKSFCKFMVQKGYSDIDPSVDLQTPKMDKRVPAILSPDKVKLL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +        +  +    R+ A+L +LY  G ++SE L LT  +I  + + ++ +  GDK 
Sbjct: 121 L-----AQPNLQEPKGIRDKAMLEILYATGFKVSELLELTMDDINTEMNYVKCRS-GDKE 174

Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R++P+     + +  Y        LN   +  +F    G+P++   F + ++   +  G+
Sbjct: 175 RLLPINRVACQYLQNYIIQARDKLLNGKEESVVFVNCHGQPMSRQGFWKIVKYYAKKAGI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
               T +TLRHSFA ++LS+G D++++Q +LGH  +STT  Y
Sbjct: 235 NQPITPYTLRHSFAINMLSSGMDIKTVQQLLGHTDISTTYTY 276


>gi|229497057|ref|ZP_04390761.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229315982|gb|EEN81911.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 398

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 83/309 (26%), Positives = 147/309 (47%), Gaps = 15/309 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L  ER  S+ T+ +YE D +Q++ ++     E+             IR F+S 
Sbjct: 6   IERFLGYLRYERNQSEHTVAAYELDLQQYVRYVEEVLGEEF---VPSDGDRDLIRGFLSS 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q     S+ R LS +KS+ +YL K  +  +S    +R  +  + LP  L+E++   L
Sbjct: 63  LIEQGRKRSSVHRKLSSLKSYYRYLVKIGLLEQSPARLVRGPRGESPLPAVLSEQEISNL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +    +    +  ++  RN  IL + Y  G+R SE + L    +      LR+ GKG K 
Sbjct: 123 LYAQEV---DKDDFVALRNQLILEMFYETGMRRSELVGLLEGGVDLSSRVLRVFGKGRKE 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-GL 256
           RI+P    +   I EY  L      + +    F  +  +PL+  V  + + +  + + GL
Sbjct: 180 RIIPFGDRLAARISEYLALKHQ--KVGLSQIFFVSLGNQPLSGEVVYQIVHERLQSIPGL 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRH+FAT +L+NG  L +++ +LGH  ++TT +YT+ +       + ++Y+ 
Sbjct: 238 ARR-GPHVLRHTFATAMLNNGAQLMAVKELLGHKSVATTVLYTHTS----LAELQQMYN- 291

Query: 317 THPSITQKD 325
            HP  ++K 
Sbjct: 292 AHPRASKKK 300


>gi|28572274|ref|NP_789054.1| DNA recombinase [Tropheryma whipplei TW08/27]
 gi|28410405|emb|CAD66791.1| putative DNA recombinase [Tropheryma whipplei TW08/27]
          Length = 349

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 86/349 (24%), Positives = 150/349 (42%), Gaps = 49/349 (14%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
            +  ++  +   +    ++E GLS  TLQ+Y      +L +L     ++     + +++ 
Sbjct: 13  AIPPDIKPDFDWFFPFAKLELGLSDATLQTYRNSLGIYLSWLGEQGTQR-----LSEVNS 67

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             I  F+  R+       +L  +++ +++F ++L        +    ++  K   +LP  
Sbjct: 68  NAIERFLEYRQRHTRK-STLANTVAALRTFHRHLVLEGRQALNPTEKLQQPKVPKALPHP 126

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQST 187
           L+  + + L+     + + E   I  R+ A++ +LYG G RISEA+SL      + DQ+ 
Sbjct: 127 LSLDEIINLLKAADANQARE---ISLRDRALIEVLYGTGARISEAVSLNVNAFAESDQNL 183

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-------------------- 227
           LR+ GKG+K R+V      R A+  Y       L     +                    
Sbjct: 184 LRLTGKGNKQRMVLFGSYARNAVDNYLQHSRPKLLARSHVYRNITDASTLKYRPTSSTIG 243

Query: 228 ---------------PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                           LF   RGK L        IR+L     +    + H+LRHSFATH
Sbjct: 244 DAEDGVLTATAAGVPWLFLSNRGKRLTRQQAGNIIRKLGEAAEIGRYISPHSLRHSFATH 303

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           +L  G D+R++Q +LGH  ++TT +YT V      D + E+Y  +HP  
Sbjct: 304 MLQAGADIRTVQELLGHSSINTTSVYTKVT----IDSLREVYTTSHPRA 348


>gi|209883237|ref|YP_002287094.1| tyrosine recombinase XerD [Oligotropha carboxidovorans OM5]
 gi|209871433|gb|ACI91229.1| tyrosine recombinase XerD [Oligotropha carboxidovorans OM5]
          Length = 316

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 82/317 (25%), Positives = 133/317 (41%), Gaps = 21/317 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L  E+G    TL +Y  D      FLA             +     +R +++ 
Sbjct: 10  IELFLDMLAAEQGAGDNTLNAYRSDLEDLSAFLAHAK------TDFARADTQALRDYLAD 63

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S+ R LS  +   ++L   +  ++     +   K+   LP+ L+      L
Sbjct: 64  LDRRGFKSSSVARRLSSTRHLFRFLLNERKRSDDPAAILAGPKRGRPLPKVLSIADVDRL 123

Query: 138 VDNVLLHTSHETKWI----DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           +         E   +      R   +L +LY  GLR+SE ++L       D   + ++GK
Sbjct: 124 LGKAREFADQEQAPLQKLRAMRLWCLLEVLYATGLRVSELVALPLSAAKRDARMIVVRGK 183

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-----LPLFRGIRGK-PLNPGVFQRYI 247
           GDK R+VPL  S R+A+  Y            +       LF        L    F R +
Sbjct: 184 GDKERLVPLNQSSREAMTAYLAATEAAKTDKTKSEPRSKWLFPSSGESGHLTRQHFARDL 243

Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           ++L     + P   + H LRH+FA+HLL NG DLR +Q++LGH  +STTQIYT+V  +  
Sbjct: 244 KELAMAAAISPRLISPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER- 302

Query: 307 GDWMMEIYDQTHPSITQ 323
              +  +    HP   +
Sbjct: 303 ---LKSLVRDLHPLAEK 316


>gi|332969737|gb|EGK08751.1| tyrosine recombinase XerD [Kingella kingae ATCC 23330]
          Length = 294

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 77/304 (25%), Positives = 139/304 (45%), Gaps = 20/304 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            ++ L +L ++  L+  TLQ+Y  D  +    L     + +   +++  S      +++ 
Sbjct: 9   IESLLDHLWLQERLADNTLQAYRRDLNKLATRLQQENTDFLHASSLQLASAI----YLAD 64

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                   R+  R LS  K    +L ++    ++   +++  K   +LP+ + E Q   L
Sbjct: 65  E-----SPRTQSRCLSAAKRLYAWLIEQGKRADNPCRDLKTAKLPRTLPQLITEAQIDAL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +        +       R+ A+L L+Y  GLR+SEA+ L    +   Q  + I GKGDK 
Sbjct: 120 L-----AAPNVDTPHGLRDKALLELMYATGLRVSEAIGLRLHELKLLQGMVSIIGKGDKQ 174

Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVPL       +  Y        L       +F   +   +   +    + +  + +G+
Sbjct: 175 RIVPLGEEAIFWLERYLHEARDTLLKGANCDVVFVSQKCNGITRQLAWMAVNKYAQQVGI 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            +  + H LRH+FATHL+++G DLR +Q +LGH  L+TT+IYT+V +      + ++ D 
Sbjct: 235 -VGLSPHGLRHAFATHLVNHGADLRVVQLLLGHANLTTTEIYTHVANVR----LKQVVDT 289

Query: 317 THPS 320
            HP 
Sbjct: 290 HHPR 293


>gi|329119991|ref|ZP_08248663.1| tyrosine recombinase XerD [Neisseria bacilliformis ATCC BAA-1200]
 gi|327463904|gb|EGF10218.1| tyrosine recombinase XerD [Neisseria bacilliformis ATCC BAA-1200]
          Length = 290

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 131/304 (43%), Gaps = 20/304 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +  + +L ++  LS  TL +Y  D  +    L+   +  +  Q+   L+    RA    
Sbjct: 5   IERLIDHLWLQDRLSANTLAAYRRDLEKTAARLSEQGKGWLDAQS-GDLAAAVYRA---- 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
               +   RS  R+LS  K    +L     T      ++R+ K+  +LP  + E Q   L
Sbjct: 60  ----EASPRSQARALSACKRLYGWLLDTGQTAADPTEHLRSPKQEKTLPPVIGEAQIDAL 115

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +                R+ A+L L+Y  GLR+SEA+ L           +   GKG K 
Sbjct: 116 L-----AAPDADTPHGLRDKALLELMYATGLRVSEAVRLRQDEAKLQAGFVSTIGKGGKQ 170

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           RIVP+       +  Y       L  N +   +F   +   ++  +    + +     G+
Sbjct: 171 RIVPMGEEAVYWLERYLAQARPQLLKNARCDEIFVSQKRVGISRQLAWMIVEKHAAAAGI 230

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FATHL+++G DLR +Q +LGH  +STT+IYT V ++     +  I  +
Sbjct: 231 -RHLSPHGLRHAFATHLVNHGADLRVVQELLGHASISTTEIYTRVAAER----LKSIVIE 285

Query: 317 THPS 320
            HP 
Sbjct: 286 HHPR 289


>gi|114797932|ref|YP_758814.1| tyrosine recombinase XerD [Hyphomonas neptunium ATCC 15444]
 gi|114738106|gb|ABI76231.1| tyrosine recombinase XerD [Hyphomonas neptunium ATCC 15444]
          Length = 309

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 78/317 (24%), Positives = 138/317 (43%), Gaps = 36/317 (11%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+ +  ERG S  TL +Y  D      F             +   S +++ A+++   
Sbjct: 9   AFLEMMSAERGASPNTLDAYGRDLLDASEFCHLR---------LVTASSSDLSAWLADLA 59

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +   +  R LS ++ F ++L +     +     +        +P  L+ ++   L++
Sbjct: 60  ARGMAPSTQARKLSAVRRFFRFLFQEGDRKDDPTARLDGPSPEREVPDVLSREEVGRLIE 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST------LRIQGK 193
                        D R   ++ LLYG GLR +E ++L   N+   ++       + I+GK
Sbjct: 120 AC---------GNDKRLKCLVELLYGAGLRATELVTLRVGNLPRRKAGQWMSADIIIRGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI------QLPLFRGI-RGKPLNPGVFQRY 246
           G K R+ PL  +   A+ E+ ++    L  N       +  +F    +   L      + 
Sbjct: 171 GGKDRLCPLGRAALIALSEWLEVREASLPDNPLMRSKQEGFVFPSRGKEGHLTRRRLGQM 230

Query: 247 IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +  L    GL       H LRH++ATHLL  G DLR +Q++LGH  ++TTQIYT+V +  
Sbjct: 231 LEDLAGEAGLRSERVYPHALRHAYATHLLQGGADLRVVQTLLGHADIATTQIYTHVLT-- 288

Query: 306 GGDWMMEIYDQTHPSIT 322
             D + E+ +  HP  T
Sbjct: 289 --DELAELLETAHPMAT 303


>gi|85708628|ref|ZP_01039694.1| tyrosine recombinase [Erythrobacter sp. NAP1]
 gi|85690162|gb|EAQ30165.1| tyrosine recombinase [Erythrobacter sp. NAP1]
          Length = 265

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 101/265 (38%), Positives = 157/265 (59%), Gaps = 9/265 (3%)

Query: 59  TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
           T   +  +   ++R+ ++ RR Q + + S  R LS +K+ + Y +      + +   +  
Sbjct: 9   TWHDVAAVEAHDLRSHLASRRAQGLSNSSAARELSALKALIAYARSEAGDPDPSAPRLCG 68

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            +    LPR +   +A+ + D  L+  +    WI AR+ A+L L+YG GLRI+EALSL  
Sbjct: 69  PRLKKGLPRPVTPDEAVNIAD--LIDGTASEDWIGARDRAVLLLMYGSGLRIAEALSLEG 126

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           ++ +  + TL++ GKG K R+VP+LP  R+A+ EY + CP+ L  +   PLFRG +G PL
Sbjct: 127 RDAVLGE-TLQVTGKGGKQRLVPILPITREAVAEYANACPWPLPTHE--PLFRGAKGGPL 183

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           + G+ Q+ + + RR LGLP + T H LRHSFATHLL  G DLRS+Q +LGH  L +TQIY
Sbjct: 184 SAGMVQKAMARARRALGLPDTATPHALRHSFATHLLGAGADLRSLQELLGHASLGSTQIY 243

Query: 299 TNVNSKNGGDWMMEIYDQTHPSITQ 323
           T V++ +    ++E Y   HP   +
Sbjct: 244 TKVDAAS----LLETYRGAHPRAKK 264


>gi|54026110|ref|YP_120352.1| site-specific tyrosine recombinase XerC [Nocardia farcinica IFM
           10152]
 gi|54017618|dbj|BAD58988.1| putative recombinase [Nocardia farcinica IFM 10152]
          Length = 307

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 85/322 (26%), Positives = 147/322 (45%), Gaps = 16/322 (4%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           MEG  LPE    +L      + ++L + +  S  T+++Y  D R  L  L   + +    
Sbjct: 1   MEG--LPE----DLTALLAEYGRHLRLGQNRSAHTVRAYVGDARALLTHLYTRSPD---- 50

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             I +L    +R++++          +L R  S +++F  +L           L +   K
Sbjct: 51  AAIGELDLPLLRSWLADLAAAGAARTTLARRASAVRTFTAWLTGTGRLPADPGLRLAAPK 110

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
              +LP  L  +QA+  +D        E   +  R+  I+ +LY  G+R+SE   L   +
Sbjct: 111 AHRTLPAVLARQQAVAAMDAAESGARQE-DPMALRDRLIVEMLYATGIRVSELCGLDIDD 169

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLN 239
           +  ++  +R+ GKG+K R VP       A+ ++     P    +     L  G RG+ L+
Sbjct: 170 VDRERRLVRVLGKGNKERSVPFGGPADLAVEQWLRRGRPAFATVESGRALLIGRRGRRLD 229

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               +  + ++   +        H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT
Sbjct: 230 QRQARTVVHEVVSAIPGAPDLGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYT 289

Query: 300 NVNSKNGGDWMMEIYDQTHPSI 321
           +V+ +     + +++DQ HP  
Sbjct: 290 HVSIER----LKKVHDQAHPRA 307


>gi|299132835|ref|ZP_07026030.1| tyrosine recombinase XerD [Afipia sp. 1NLS2]
 gi|298592972|gb|EFI53172.1| tyrosine recombinase XerD [Afipia sp. 1NLS2]
          Length = 319

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 85/317 (26%), Positives = 134/317 (42%), Gaps = 24/317 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L  E+G    TL +Y  D      FLA         Q         +R +++    
Sbjct: 13  FLDMLAAEQGAGDNTLNAYRSDLEDLAAFLARAK------QDFAHADTQVLRDYLADLDQ 66

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV-- 138
           +     S+ R LS ++   ++L   +  T+     +   K+  +LP+ L+      L+  
Sbjct: 67  RGFKSSSVARRLSSMRHLFRFLLNERKRTDDPAAILSGPKRGRALPKVLSIADVDRLLGK 126

Query: 139 --DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
             +          K    R   +L +LY  GLR+SE ++L       D   + ++GKGDK
Sbjct: 127 AREFADRDQPPLQKVRAMRLWCLLEVLYATGLRVSELVALPLSAARRDARMIVVRGKGDK 186

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--------PLFRGIRGK-PLNPGVFQRYI 247
            R+VPL  S R A+  Y            +          LF        L    F R +
Sbjct: 187 ERLVPLNQSSRDAMAAYLAAAGTAKEEKGEKAKSEPASKWLFPSSGESGHLTRQHFARDL 246

Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           ++L    G+ P   + H LRH+FA+HLL NG DLR +Q++LGH  +STTQIYT+V  +  
Sbjct: 247 KELAVAAGISPRLISPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER- 305

Query: 307 GDWMMEIYDQTHPSITQ 323
              +  +    HP   +
Sbjct: 306 ---LKSLVRDLHPLAEK 319


>gi|297170713|gb|ADI21736.1| site-specific recombinase XerD [uncultured actinobacterium
           HF0130_15N16]
          Length = 317

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 86/313 (27%), Positives = 135/313 (43%), Gaps = 23/313 (7%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E + ++ +LE  R L + T  SY  D   F  +L    EE      I  +    I ++++
Sbjct: 13  EVEQFMHSLES-RNLQESTRYSYGRDLESFRSWLDGRGEE------IMMVEEGTINSYVA 65

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             R        + R+   I+SF KYL             +  LK     P+A++ ++   
Sbjct: 66  HLRKSGRAPSGVARATVSIRSFYKYLTLEGHIKVDPGAAIAVLKVPQGFPKAIDIEKVER 125

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+     +T         R+ AIL  LYG GLR+SE  +L   ++  + S LR+ GKG K
Sbjct: 126 LL-----NTPVGEGPYVLRDRAILETLYGAGLRVSELTALVVDDVDLEDSFLRVFGKGRK 180

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL-------NLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
            R+VPL    + A+  +      ++           Q  +F    G PL+       +R+
Sbjct: 181 ERVVPLGGHAKDALAAWMSGAGREVLLERRKRTDQAQRNVFLNKFGNPLSRKGTWAIVRR 240

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                GL    T H LRHS ATH+L  G  +R +Q +LGH  + +TQ+YT          
Sbjct: 241 HGLRAGLGDDLTPHVLRHSCATHMLEAGASIRHVQELLGHSSIRSTQVYT----GRREAE 296

Query: 310 MMEIYDQTHPSIT 322
           +  IY + HP  +
Sbjct: 297 LKAIYLEKHPRAS 309


>gi|29840494|ref|NP_829600.1| site-specific tyrosine recombinase XerD [Chlamydophila caviae GPIC]
 gi|29834843|gb|AAP05478.1| integrase/recombinase XerD [Chlamydophila caviae GPIC]
          Length = 298

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 95/305 (31%), Positives = 147/305 (48%), Gaps = 21/305 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + ++  L ++RGL + ++ +Y  D   FL   A        I +  ++S   +  F+ +
Sbjct: 11  LEQFILFLSVDRGLCRNSISAYCQDITLFLKINA--------ITSTEEISQDSVYLFVQQ 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +K  + +L R L  +K F ++LK+ K+     +  + + K    LP  L  K+   L
Sbjct: 63  LHKRKEAESTLARRLIALKVFFRFLKEAKLLDHPPL--IEHPKIWKRLPSVLTPKEVDAL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +       S  +  I AR++AIL  LY  G+R+SE   L   ++ DD   LR+ GKG K 
Sbjct: 121 LSA--AQQSKTSPIISARDTAILLTLYSTGIRVSELCDLCISDVSDD--FLRVTGKGSKT 176

Query: 198 RIVPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R+VPL     KAI  Y       F      +  LF  +RG  L      R I    + + 
Sbjct: 177 RLVPLGKVACKAIDAYLCPFRETFQKLHPEEHHLFLSVRGHRLERSCVWRRIHYYAKQVT 236

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H+LRH+FATHLL N  DLR IQ +LGH R+++T+IYT+V      D +ME + 
Sbjct: 237 -HKRVSPHSLRHAFATHLLDNKADLRIIQEMLGHARIASTEIYTHV----AADTLMENFL 291

Query: 316 QTHPS 320
             HP 
Sbjct: 292 SYHPR 296


>gi|312143561|ref|YP_003995007.1| integrase family protein [Halanaerobium sp. 'sapolanicus']
 gi|311904212|gb|ADQ14653.1| integrase family protein [Halanaerobium sp. 'sapolanicus']
          Length = 311

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 82/313 (26%), Positives = 145/313 (46%), Gaps = 11/313 (3%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           I   + L+    + + L++E+G SKLT++ YE D +Q   +L    +     +    +  
Sbjct: 3   ISQLKFLEAVNKFKKYLDVEKGYSKLTIKEYENDLQQLYRYLKEELDFPEEFKP-EDVDR 61

Query: 69  TEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-P 126
            +I  F++           +  R L  I+SF KYL +  +  ++    + + K    L P
Sbjct: 62  LDIAEFLADAVIVNDNKAITRNRKLFAIRSFYKYLLRYGVIEKNPAEAIDSSKTDTKLEP 121

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             L  K+A   +         +      R+ AI  L    GLRISE ++L   N+  +  
Sbjct: 122 IYLKLKEAQKFI----AAIDDKDNINRLRDIAITKLFLYAGLRISELVNLDFDNVDFEDG 177

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           +++  GKG K R VPL   V +A+  Y          + + +  +F    G+ ++P   Q
Sbjct: 178 SIKFYGKGSKERYVPLHNDVTEALKRYLKERNTIKIKDQDARQAIFLSRHGRRISPRTIQ 237

Query: 245 RYIRQLRRYLGLPL--STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            ++++  +  GL      T H LRH+FA+ L     D++ +Q +LGH  +STTQIYT+V+
Sbjct: 238 LFVKKYAKKAGLSRADKITPHKLRHTFASMLYRQTKDIKVLQDLLGHANISTTQIYTHVD 297

Query: 303 SKNGGDWMMEIYD 315
           ++     + E+ D
Sbjct: 298 TEEKKSAIDEMPD 310


>gi|170781199|ref|YP_001709531.1| tyrosine recombinase XerC [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169155767|emb|CAQ00888.1| tyrosine recombinase XerC [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 315

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 79/315 (25%), Positives = 136/315 (43%), Gaps = 11/315 (3%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
              +  L  +   +  +++ ERG +  T+++Y  D R      A        + T   L 
Sbjct: 11  APAATPLEADISEFATSMDRERGSAAHTVRAYSADLRDLAAHAARQ-----GVTTSAGLD 65

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
              +R ++ +    ++   +L R  + ++ F  +L +         + ++  +  + LPR
Sbjct: 66  LDVLRDWLWRGSQARLAPATLARRSAAVRGFGAWLLRTGRVDADPAVRLKAPRAGSHLPR 125

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L  +Q  + +   L   + +      R+ A + LLY   LR+SE   L   ++   + T
Sbjct: 126 VLAREQM-SALLADLAAQAADDDPAALRDLAAIELLYASALRVSELTGLDLGDVDASRLT 184

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           +R+ GKGD+ R+VP      +A+  Y     P  +       LF G RG  L        
Sbjct: 185 VRVVGKGDRERVVPFGVPAAEALDAYVTRGRPALVTPRTGTALFLGARGGRLGSRAVYGL 244

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +  L   +        H LRH+ ATHLL  G DLR++Q +LGH  L TTQIYT+V+ +  
Sbjct: 245 VASLLADIPGSGPQGPHALRHTAATHLLDGGADLRTVQEMLGHASLGTTQIYTHVSIER- 303

Query: 307 GDWMMEIYDQTHPSI 321
              +   Y+  HP  
Sbjct: 304 ---LRRSYEGAHPRA 315


>gi|302383500|ref|YP_003819323.1| integrase [Brevundimonas subvibrioides ATCC 15264]
 gi|302194128|gb|ADL01700.1| integrase family protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 300

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 85/310 (27%), Positives = 138/310 (44%), Gaps = 20/310 (6%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           + + +L+ + +ER  S  TL +Y  D            E  I    +       I A+ +
Sbjct: 5   QIEAYLEMMAVERDASPHTLSAYARDLAD--------AEASIDGGGLIAADEAAIEAWFA 56

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               + +   +  R  S I+ F ++       T+     +   K+   LPR LN ++ + 
Sbjct: 57  GLAPRGLSAATAARRRSAIRQFYRFAMGEGWRTDDPSRRLDAPKQGRPLPRTLNREEVVG 116

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L    L  ++        R  A++ L Y  GLR+SE L L  + +  D + L ++GKG K
Sbjct: 117 L----LTASAARDGAAGLRMIALVELAYASGLRVSELLGLRVEAVRRDPAYLIVRGKGGK 172

Query: 197 IRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFR-GIRGKPLNPGVFQRYIRQLRRY 253
            R+ PL  S R+A+  +                 LF  G     L P  F + + Q    
Sbjct: 173 ERLAPLNASAREAVKAWLIARDARRPEKAPDSPWLFPSGAASGHLTPRRFAQMLDQAAVD 232

Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+ P   + H LRH+FATHLL  G DLR +Q++LGH  ++TTQIYT+V +    D + +
Sbjct: 233 AGIDPARVSPHVLRHAFATHLLEGGADLRVVQTLLGHADIATTQIYTHVAT----DRLTQ 288

Query: 313 IYDQTHPSIT 322
           + ++ HP   
Sbjct: 289 VVNRHHPLAK 298


>gi|254796806|ref|YP_003081643.1| site-specific recombinase, phage integrase family [Neorickettsia
           risticii str. Illinois]
 gi|254590046|gb|ACT69408.1| site-specific recombinase, phage integrase family [Neorickettsia
           risticii str. Illinois]
          Length = 307

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 113/317 (35%), Positives = 166/317 (52%), Gaps = 16/317 (5%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ME    P + +         W + L   +  S  TL +Y  DT  FL FL+ +  E +  
Sbjct: 1   MECRIDPSVYAI-----LDEWTRWLGSVKCFSSNTLVAYSRDTIAFLDFLSTFRGESVNC 55

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            ++  +   ++RA+++ RR   I  R+  R+LS +KSF +YL K       ++L +    
Sbjct: 56  ASLEGIDDKDLRAWLASRRKNSISFRTNARALSSVKSFFRYLAKHNGIINEDVLGVVLRF 115

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K N+LPR+L  K+ + L++     +  +T WI  RN A+ YLLYG GLRISEALSLT  +
Sbjct: 116 KPNTLPRSLTFKEIIELIEKF---SFLKTGWIVKRNIALCYLLYGSGLRISEALSLTVAD 172

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                + ++I GKG + R++ LLP VR A+ +Y   CPF L+      LF    G  L  
Sbjct: 173 --LANTEIKIMGKGSRERMIRLLPIVRVALADYIASCPFQLDGGGF--LFLDRNGNKLCR 228

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                    +RR   L    T H LRHSFATHLL  G  +R IQ +LGH  L++T +YT 
Sbjct: 229 TAVAGAFLSIRRRFNLSNHITPHALRHSFATHLLQEGVGVRKIQELLGHASLASTAVYTK 288

Query: 301 VNSKNGGDWMMEIYDQT 317
           +N+++    +ME Y Q 
Sbjct: 289 LNAES----LMEKYRQF 301


>gi|241758661|ref|ZP_04756775.1| tyrosine recombinase XerD [Neisseria flavescens SK114]
 gi|241321172|gb|EER57368.1| tyrosine recombinase XerD [Neisseria flavescens SK114]
          Length = 293

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 83/300 (27%), Positives = 142/300 (47%), Gaps = 20/300 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L++L ++  LS  TLQSY  D  +    LA   ++ ++                     +
Sbjct: 12  LESLWLQDRLSHNTLQSYRRDLVKVAARLAECGQDWLSADEFALSDSV---------YAE 62

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                S  R+LS  K    +L++     ++    ++  K    LP  + E Q   L+   
Sbjct: 63  GEKSTSQARALSACKRMYGWLEETGQRADNPTRFLKAPKSERKLPTLITEAQIDALLAAP 122

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
            + TSH       R+ A+L ++Y  GLR++EA+ LT  +I   + ++R  GKGDK+R+VP
Sbjct: 123 DVETSH-----GLRDKALLEVMYATGLRVTEAVKLTLSDIDLHRGSIRTIGKGDKLRLVP 177

Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           L       +  Y +   P  L   I   +F   +   ++  +    +++     G+  S 
Sbjct: 178 LGQEAAYWVERYCNESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKEYAEAAGIA-SL 236

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H LRH+FATHL+++G DLRS+Q +LGH  ++TTQIYT+V +      +  + D+ H  
Sbjct: 237 SPHGLRHAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHVAN----IRLKNMVDEHHSR 292


>gi|20807762|ref|NP_622933.1| integrase [Thermoanaerobacter tengcongensis MB4]
 gi|34222924|sp|Q8RAB1|XERDL_THETN RecName: Full=Tyrosine recombinase xerD-like protein
 gi|20516317|gb|AAM24537.1| Integrase [Thermoanaerobacter tengcongensis MB4]
          Length = 290

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 78/307 (25%), Positives = 135/307 (43%), Gaps = 29/307 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+ L+  + LSK TL+SY  D  QFL ++  +     + +       + I  ++   +
Sbjct: 8   EFLEFLKKNKRLSKNTLESYSRDVEQFLTYMNEHGINFCSAK------KSTIVNYLYFLK 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q     ++ R+LS IK+F  YL  +K   E     +   K     P  L  +Q      
Sbjct: 62  QQGKSQATISRALSSIKAFYHYLFAKKKIEEDPSYGINAPKVEKKEPVTLTVEQV----- 116

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           ++LL           R+ A++ L+Y  GL++SE +SL  +++      + ++    K R+
Sbjct: 117 DMLLSFDFGKDEKGLRDKALIELMYASGLKVSEVISLKIEDVNLASGYIVVRS--GKERV 174

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +P+      A+ EY +          +  LF  +RGK L      + I++    +   L 
Sbjct: 175 IPIGSYAVAALQEYIEKG--RKPRKGEKALFLNLRGKRLTRQGCWKIIKEYADKISPGLP 232

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY-----TNVNSKNGGDWMMEIY 314
            T + LR SFA H+L NG DL+++Q +LG         Y      N+ S      M E+Y
Sbjct: 233 LTPNILRKSFAQHMLQNGADLKTVQEMLG---------YEVNFGNNLLSLVSRSKMKEVY 283

Query: 315 DQTHPSI 321
           ++ HP  
Sbjct: 284 NKFHPRA 290


>gi|126737600|ref|ZP_01753330.1| tyrosine recombinase XerD [Roseobacter sp. SK209-2-6]
 gi|126720993|gb|EBA17697.1| tyrosine recombinase XerD [Roseobacter sp. SK209-2-6]
          Length = 328

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 135/304 (44%), Gaps = 20/304 (6%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           + TL +Y  D +    +L        T Q        +I A++     + +   +  R L
Sbjct: 26  RNTLLAYGRDLKDAASWLFHRESGFATAQ------RADIEAYLIACDAEGLSRATRARRL 79

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           S +K   ++  +    +++  + +    +   LP+ L   +   L+D      +  +   
Sbjct: 80  SALKQIYRFAFEEGWRSDNPAIQISGPGRDKKLPKTLEVIEVDRLLDA--ARQTGRSPED 137

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
             RN  ++ LLY  G+R+SE +SL   +   D   L + GKG K R+VPL P  R A+  
Sbjct: 138 RLRNCCLMELLYATGMRVSELVSLPVSSARGDPQMLLVLGKGGKERLVPLSPPARDALAA 197

Query: 213 YYDLCPFDLNLNIQL------PLFRGI-RGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHT 264
           +  +       N          LF    +   L    F   I+ L    G+ P   T HT
Sbjct: 198 WLSVRDKADEANRSKGHASSRFLFPSRGKAGHLTRHFFYLLIKDLAVTGGVDPEKVTPHT 257

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LRH+FATHLL+NG DLR+IQ++LGH  ++TT+IYT+V        + E+    HP    +
Sbjct: 258 LRHAFATHLLANGADLRAIQTLLGHADIATTEIYTHVLEAR----LQELVMDHHPLSKTR 313

Query: 325 DKKN 328
            K +
Sbjct: 314 RKTD 317


>gi|225077168|ref|ZP_03720367.1| hypothetical protein NEIFLAOT_02223 [Neisseria flavescens
           NRL30031/H210]
 gi|224951516|gb|EEG32725.1| hypothetical protein NEIFLAOT_02223 [Neisseria flavescens
           NRL30031/H210]
          Length = 292

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 82/300 (27%), Positives = 141/300 (47%), Gaps = 20/300 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L++L ++  LS  TLQSY  D  +    LA   ++ ++                     +
Sbjct: 11  LESLWLQDRLSHNTLQSYRRDLVKVAARLAEGGQDWLSADEFALSDAV---------YAE 61

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                S  R+LS  K    +L++     ++    ++  K    LP  + E Q   L+   
Sbjct: 62  GEKSTSQARALSACKRMYVWLEETGQRADNPTRFLKAPKSERKLPTLITEAQIDALLAAP 121

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
            + T H       R+ A+L ++Y  GLR++EA+ LT  +I   + ++R  GKGDK+R+VP
Sbjct: 122 DVETPH-----GLRDKALLEVMYATGLRVTEAVKLTLSDIDLHRGSIRTIGKGDKLRLVP 176

Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           L       +  Y +   P  L   I   +F   +   ++  +    +++     G+  S 
Sbjct: 177 LGQEAAYWVERYCNESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKEYAEAAGIA-SL 235

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H LRH+FATHL+++G DLRS+Q +LGH  ++TTQIYT+V +      +  + D+ H  
Sbjct: 236 SPHGLRHAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHVAN----IRLKNMVDEHHSR 291


>gi|68171293|ref|ZP_00544693.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88658163|ref|YP_506998.1| tyrosine recombinase XerD [Ehrlichia chaffeensis str. Arkansas]
 gi|67999274|gb|EAM85923.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88599620|gb|ABD45089.1| tyrosine recombinase XerD [Ehrlichia chaffeensis str. Arkansas]
          Length = 309

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 87/310 (28%), Positives = 147/310 (47%), Gaps = 25/310 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ +  E+ +S  T QSY  D      F+            +   S  E++ +I     
Sbjct: 10  FLEAIVAEKHVSHNTYQSYRTDLLGLCKFI------DRNDLLLTDASIHELQDYIRFLYE 63

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     ++ R +S IK+   +L +  I      + + + K S SLP+ L+ ++   L+D 
Sbjct: 64  KGYKANTVSRKISAIKNLYGFLYRDNIIENDPTVYLDSPKLSRSLPKTLSYEEVNILLDV 123

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT-------PQNIMDDQSTLRIQGK 193
             L  S + + I+    AI+ +LY  G+RISE + L          +   +   ++IQGK
Sbjct: 124 AALDVSPDGRRIN----AIVNILYSSGIRISELVYLKFREVREALDDGDTEICHMKIQGK 179

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRG-KPLNPGVFQRYIRQL 250
             K RI+ L  S   +I +Y ++  + +     +   LF G +   P+      + ++ L
Sbjct: 180 AKKERIILLNSSAVTSIQKYMEVYEYFIPNGYKMSQWLFPGTKFDNPVTRQRVGQLLKNL 239

Query: 251 RRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
               G+ +   + H LRHSFATHLL+NG D+  IQ +LGH  L+TTQIYT+V S+     
Sbjct: 240 AMNAGINVTHVSPHKLRHSFATHLLNNGSDIVFIQKMLGHANLATTQIYTHVASER---- 295

Query: 310 MMEIYDQTHP 319
           +  I  + HP
Sbjct: 296 LKSILLKFHP 305


>gi|241762668|ref|ZP_04760738.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241372739|gb|EER62461.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 307

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 115/304 (37%), Positives = 174/304 (57%), Gaps = 15/304 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            W Q L+     S   +++Y     +F+ FL  +  + I   T+++    EIRAF++ RR
Sbjct: 19  QWEQYLQFSLRRSPHGIRAYMATVHRFISFLGNHRGDLIDKNTLQKTDIAEIRAFLAYRR 78

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              + + S+ R +SGI++FL++           I  ++  +    +PR L+ + A+ L  
Sbjct: 79  QSGLANSSVAREISGIRAFLRF------IGLDPIPAIKGARVKKGIPRPLSPEDAVALAK 132

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                 S +  WI+AR+ A+L LLYG GLRISEAL+LT + +   Q+TLR+ GK  KIRI
Sbjct: 133 EASEEASEQ--WIEARDLALLLLLYGSGLRISEALNLTCEILPL-QTTLRVVGKRSKIRI 189

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPLL  V++A+  Y  LCP+  +     P FRG +G  L+  V +R +R+ R +LGL   
Sbjct: 190 VPLLEKVKRAMETYVRLCPYAFSG--SQPFFRGAKGGVLSADVLRRTVRKARYHLGLDNK 247

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T H LRHSFA+HLL  G DLRS+Q +LGH  LS+TQIYT V++      ++++Y   HP
Sbjct: 248 ATPHALRHSFASHLLGRGADLRSLQELLGHASLSSTQIYTAVDAAR----LLDVYRAAHP 303

Query: 320 SITQ 323
              +
Sbjct: 304 RADK 307


>gi|15827839|ref|NP_302102.1| site-specific tyrosine recombinase XerC [Mycobacterium leprae TN]
 gi|221230316|ref|YP_002503732.1| site-specific tyrosine recombinase XerC [Mycobacterium leprae
           Br4923]
 gi|18202762|sp|Q9CBU0|XERC_MYCLE RecName: Full=Tyrosine recombinase xerC
 gi|13093391|emb|CAC30551.1| integrase/recombinase [Mycobacterium leprae]
 gi|219933423|emb|CAR71695.1| integrase/recombinase [Mycobacterium leprae Br4923]
          Length = 297

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 81/308 (26%), Positives = 135/308 (43%), Gaps = 12/308 (3%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +     + ++L +  G S+ T ++Y  D R  L  L            + QLS   +R++
Sbjct: 1   MAILDEFDEHLALRCGRSEHTRRAYLGDLRSLLTHLEGRGSR------LDQLSLPVLRSW 54

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++          +L R +S +K+F  + K R          ++  +   +LP  L + QA
Sbjct: 55  LATAAGAGAARTTLARRISAVKAFTAWAKWRGQLAADPAARLQVPRAYRTLPAVLRQDQA 114

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           L ++       + +   +  R+  I+ +LY  G+R+SE   L   ++      +R+ GKG
Sbjct: 115 LQIM-AAAKSGAEQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTRHRLVRVLGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R  P       A+  + D     L      P L  G RG+ L+    +  + Q    
Sbjct: 174 NKQRTAPFGVPAADALRGWLDDGRPALVTVESGPALLLGSRGRRLDVRQARTVVHQTVAV 233

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +        H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V        +  +
Sbjct: 234 VAGAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHV----AVSRLRVV 289

Query: 314 YDQTHPSI 321
           +DQ HP  
Sbjct: 290 HDQAHPRA 297


>gi|190571372|ref|YP_001975730.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|213018771|ref|ZP_03334579.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|190357644|emb|CAQ55088.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|212995722|gb|EEB56362.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 328

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 89/314 (28%), Positives = 147/314 (46%), Gaps = 25/314 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  L  E+  ++ TL+SY  D  Q   FL           T+   S   I+ +++  RT
Sbjct: 18  YIDALVSEKSSTQNTLESYRSDLHQLEKFLLE------GGTTLVGASKANIKDYVNFLRT 71

Query: 81  QK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNIL----NMRNLKKSNSLPRALNEKQAL 135
           QK     S+ R +S IK+F K L    I   +        +RN K S  LP+ L+ ++  
Sbjct: 72  QKKYKTSSISRKISAIKNFYKCLFNDGIIDFNPAPANDNELRNPKVSRPLPKYLSVQEIF 131

Query: 136 TLVDNVLLHTSHETKWIDARNS-AILYLLYGCGLRISEALSLTPQ------NIMDDQSTL 188
            L++ V    S   K I ++   AIL +LY  G+R+SE +++         N    +  +
Sbjct: 132 LLMETVKKSASGSNKEISSKRLCAILDILYSSGMRVSELINMKLCEVLHLVNGNGKEGYI 191

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGK-PLNPGVFQRY 246
            I+GK  + R +       +++  Y  +    L N      LF G +   P+      + 
Sbjct: 192 IIKGKSSRERQILFNEQALQSLKNYLSIRDNLLPNNKKSDWLFPGDKPNKPITRQRVGQL 251

Query: 247 IRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           I++L R   +     + H +RHS ATHLL++G ++  IQ ILGH  LSTTQIYT++ ++ 
Sbjct: 252 IKELARKCDIDENKISPHVIRHSLATHLLNSGANIVLIQKILGHTNLSTTQIYTHIANEK 311

Query: 306 GGDWMMEIYDQTHP 319
             D + +    +HP
Sbjct: 312 LKDKLAD----SHP 321


>gi|325127862|gb|EGC50768.1| tyrosine recombinase XerD [Neisseria meningitidis N1568]
          Length = 291

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 78/300 (26%), Positives = 132/300 (44%), Gaps = 20/300 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L ++R LS+ TL  Y  D  +    L+               +   +          
Sbjct: 10  LETLWLDRRLSQNTLNGYRRDLEKIARRLSQSGRTLKDADEADLAAAVYV---------D 60

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                S  R+LS  K    ++++  I T++    ++  K   ++P  + E+Q   L+   
Sbjct: 61  GEQRSSQARALSACKRLYIWMEREGIRTDNPTCLLKPPKIDKNIPTLITEQQISRLL--- 117

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
                        R+ A+L L+Y  GLR+SEA+ L   N+  D+  +   GKGDK R+VP
Sbjct: 118 --AAPDTDTPHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVP 175

Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +       +  YY    P  L       LF   +   ++  +    +++     G+    
Sbjct: 176 MGQESAYWVGRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIG-HI 234

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H+LRH+FATHL+ +G DLR +Q +LGH  L+TTQIYT+V +     W+  +  + H  
Sbjct: 235 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVAN----VWLQGVVKEHHSR 290


>gi|304316783|ref|YP_003851928.1| integrase [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778285|gb|ADL68844.1| integrase family protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 288

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 80/308 (25%), Positives = 140/308 (45%), Gaps = 20/308 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++   Q ++  L+ ++ LS  T+ SY+ D  QFL +L     EKI I    ++    I  
Sbjct: 1   MVSVVQAFIDYLKNDKKLSDNTVDSYKRDIIQFLEYL-----EKINIGCF-EVKKATIIN 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++  + +     ++ R LS IKSF +YL   ++  E     +   K    +P  L+  Q
Sbjct: 55  YMNLLKHKNRSQATISRHLSSIKSFYQYLFMNRLIDEEPAYTLDAPKIERKVPVTLSIDQ 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+         E      R+ AI+ +LY  GL++SE +SL   ++  +   +    K
Sbjct: 115 VDKLLSY-----EFEKSEKGLRDKAIIEVLYATGLKVSELISLRIDDVNLNYGYIYC--K 167

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
             K R +P+  S   A+  Y  +     N+     LF  +RG+ L      + I++    
Sbjct: 168 SAKERFIPIGESAVDALQNYMSVR---KNIKNNDHLFLNMRGEALTRQGCWKIIKEYTDI 224

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +      T   LR SFA HLL NG D+RS+Q +LG+  +++ +    + S      + E+
Sbjct: 225 VNPGFDITPSILRRSFAKHLLENGADIRSVQEMLGYKSVNSNE----LISLISKSKIKEV 280

Query: 314 YDQTHPSI 321
           Y ++HP  
Sbjct: 281 YKKSHPRA 288


>gi|42526718|ref|NP_971816.1| phage integrase family site specific recombinase [Treponema
           denticola ATCC 35405]
 gi|81412439|sp|Q73NE4|XERC_TREDE RecName: Full=Tyrosine recombinase xerC
 gi|41817033|gb|AAS11727.1| site-specific recombinase, phage integrase family [Treponema
           denticola ATCC 35405]
          Length = 305

 Score =  220 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 83/315 (26%), Positives = 140/315 (44%), Gaps = 25/315 (7%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  +++L      R  +K T+ SY+ D   F  +L            I +L  ++IR FI
Sbjct: 3   EVFESYLTYSAGVRQFTKATIDSYKNDLIIFEEWLKELD------LNIFELKASDIRIFI 56

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++   +KI   S+ R +S ++ F KY  +  +T  + I ++RNLK +  LP  +  KQA 
Sbjct: 57  AELADKKIAPASINRMMSTLRGFYKYALRFNLTKMNPISSVRNLKLAQKLPVFMFPKQAQ 116

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
                     S+     + R++A+   LY  G R+SE   L  +++    S   + GKG 
Sbjct: 117 EFCRL----PSNAGILWETRDAALFASLYSTGCRVSELAGLDIKDLDKTLSYAIVFGKGK 172

Query: 196 KIRIVPLLPSVRKAILEYYDLC-----------PFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           K R V      ++ + EY                 D    I+  LF   + +PL     +
Sbjct: 173 KERKVFFAEFAKEYLREYLKERSDLVEKFKGQVQKDGKGKIRDTLFINQKAQPLTSRGIR 232

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             I +           + H  RHSFA+ L++ G D+R +Q +LGH  +STTQ YT++ ++
Sbjct: 233 YIIDRYVELSPELKHLSPHAFRHSFASTLITRGADIRVVQELLGHESVSTTQRYTHITAE 292

Query: 305 NGGDWMMEIYDQTHP 319
                +  +Y   HP
Sbjct: 293 Q----LQNLYKTAHP 303


>gi|269123142|ref|YP_003305719.1| integrase family protein [Streptobacillus moniliformis DSM 12112]
 gi|268314468|gb|ACZ00842.1| integrase family protein [Streptobacillus moniliformis DSM 12112]
          Length = 287

 Score =  220 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 145/304 (47%), Gaps = 27/304 (8%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           + E  ++L  L+ E+G +  T++SY  D   F   +          + +  ++  +I  +
Sbjct: 1   MVEVNSFLDYLKFEKGNADKTIESYRNDLYTFFKKVN---------KKVVDITSDDIYQY 51

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I K + +K    ++ R +S IKSF K+    KI        + NLKK   LP AL+ ++ 
Sbjct: 52  IEKLK-EKYTYNTVIRKISSIKSFFKFCYIEKIIKNDPANKIHNLKKEKRLPNALSVEEI 110

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGK 193
            +++ +         + ++ RN  I+  L   G RISE ++L  ++I   D    ++ GK
Sbjct: 111 NSIIQSF------NHEPVNRRNQLIVKFLVATGARISEVINLEIKDIENSDFEFAKLYGK 164

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRR 252
           G K R VP+   + K I EY       +  + +  L F GIR        F + + +  +
Sbjct: 165 GSKYRFVPIYLELEKEIKEYIREIRPKIKGSEKSYLLFPGIR-----RENFWKILNKHAQ 219

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            +G+      H  RHS AT ++ NG D+R +Q +LGH  ++TT++YT+V        + E
Sbjct: 220 NVGIEKKIHPHLFRHSTATMMIENGADIRIVQELLGHASITTTEVYTHV----EKSKLRE 275

Query: 313 IYDQ 316
           IY +
Sbjct: 276 IYKK 279


>gi|300775996|ref|ZP_07085855.1| tyrosine recombinase XerC [Chryseobacterium gleum ATCC 35910]
 gi|300505129|gb|EFK36268.1| tyrosine recombinase XerC [Chryseobacterium gleum ATCC 35910]
          Length = 306

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 83/311 (26%), Positives = 144/311 (46%), Gaps = 20/311 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+ LE E+  S  T+ SY+ D   F  F         +   + +     IR FI +
Sbjct: 13  LEKFLEYLEFEKRYSPHTVTSYKKDLEDFSHFFLRTE----SSDNLAKADKKIIRNFIVE 68

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQAL 135
                I  RS+ R LS ++SF  +L K      S    + +LK      +P  +++++  
Sbjct: 69  LSEHNISKRSINRKLSSLRSFYLFLLKIGEIKVSPTEGISSLKFYAEKQIP--MSKEEMA 126

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L D V           D     I+ +LY  G+R +E   L  +N+      L+I GKG+
Sbjct: 127 DLNDRVFEQV------HDVLEKCIMEVLYQTGMRKAELCGLIFENVDLYGKELKIIGKGN 180

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R+VP+   + + +  Y ++         +   F   +GK LN       + +    + 
Sbjct: 181 KERVVPISSELAELLTSYLEIRNPQ--TEYKSYFFVNKKGKKLNEKFVYVVVNKYLSLIT 238

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRHSFATH+L NG ++  ++ ILGH  L++TQ+YTN N +     + ++++
Sbjct: 239 TKEKKSPHILRHSFATHVLDNGAEISKVKKILGHSSLASTQVYTNANIEQ----LKKVFN 294

Query: 316 QTHPSITQKDK 326
           Q HP  ++K++
Sbjct: 295 QAHPRASKKEE 305


>gi|319409436|emb|CBI83085.1| integrase/recombinase XerD [Bartonella schoenbuchensis R1]
          Length = 312

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 79/314 (25%), Positives = 137/314 (43%), Gaps = 16/314 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L+ +  ERG    TL +Y+ D +     L   +    + Q        ++   +S 
Sbjct: 7   IDRFLEMMSAERGACAHTLSAYQNDLQWAHDQLCSRSVSLFSAQ------REDLINLLSL 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             T      S  R LS ++ F ++L    + T+    ++   ++   LP+ +NE     L
Sbjct: 61  MHTAGFAATSQARRLSTLRQFYQFLYAEGLRTDDPSHDIDTPRQRRLLPKTMNEDTVTKL 120

Query: 138 VDNVLLHTSHETKWIDARNSAI-----LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +D   L              A+     + +LY  GLRISE +SL  Q +   +  + ++G
Sbjct: 121 LDRAQLEVDQTDYGSKNHMRALRLQVLIEMLYATGLRISELVSLPVQAVRGKEQFIVVRG 180

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG+K R+V L     + I ++  L     +               +      R +++L  
Sbjct: 181 KGEKERMVLLSDKACQVISQWLVLRDQGKDAASFYLFPARSSTGYVARQFVARGLKELAE 240

Query: 253 YLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             G+   + + H LRH+FA+HLL NG DLR +Q +LGH  +STTQIYT+V  +     + 
Sbjct: 241 RAGVKSSNFSPHVLRHAFASHLLQNGADLRVVQHLLGHCDISTTQIYTHVLEER----LY 296

Query: 312 EIYDQTHPSITQKD 325
            + ++ HP   Q+ 
Sbjct: 297 CLVNEHHPLADQQK 310


>gi|126651787|ref|ZP_01723989.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905]
 gi|126591465|gb|EAZ85572.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905]
          Length = 355

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 85/326 (26%), Positives = 145/326 (44%), Gaps = 31/326 (9%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE---- 56
           M+ +  P+I+        +++L  L   +G S+ T + YE D   F  F     E+    
Sbjct: 36  MQKSKQPKIM--------KDFLVYLTTIKGKSQRTRKEYEYDLTLFFRFHTAVQEDLDIE 87

Query: 57  --------KITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLK-KRK 106
                    ITI+ IR ++  ++  F+     Q      S  R ++ +KSF KYLK KR+
Sbjct: 88  NLAVIDIATITIEEIRDITLEDLYYFMEYCEVQRGNSAASRARKVATLKSFFKYLKGKRR 147

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
           +  E+    +   K     P  +N ++A   +D +  + +        RN  ++      
Sbjct: 148 LIEENPAEELETPKIGRKRPIYMNFQEATQFIDGIPANQA------SPRNYCMMMFFLNL 201

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G+R++E   L   +I      L + GKG+K R V L  S  +A+ +Y +        N  
Sbjct: 202 GIRVTELCQLNITSI--QGRHLTVVGKGNKERTVYLNDSCMQALADYENSGKTPYKGNGD 259

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQS 285
            PLF   +G         + ++++ +  GL     T H LRH+ AT +   G D+RS+Q 
Sbjct: 260 EPLFVSQKGTRFTRQTVAKIVKRINQQSGLQKERLTPHKLRHTSATMMYKAGADIRSLQH 319

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMM 311
           ILGH  ++TTQIYT++  +     + 
Sbjct: 320 ILGHSSVATTQIYTHIEDEQLQQVLE 345


>gi|302343317|ref|YP_003807846.1| integrase family protein [Desulfarculus baarsii DSM 2075]
 gi|301639930|gb|ADK85252.1| integrase family protein [Desulfarculus baarsii DSM 2075]
          Length = 325

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 85/325 (26%), Positives = 146/325 (44%), Gaps = 16/325 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
               +    Q + + L    G+   T Q+Y  D RQ   F+A     K   +   Q+   
Sbjct: 6   AKASMDDPWQAFDRYLAEGAGVMPRTRQAYARDARQLAEFIAV----KRGGKPWGQVDAD 61

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++RA++++R        ++ R L+  +++ ++L++  +   +     +  K    LP  L
Sbjct: 62  DVRAWLAERLRTS-ARATVGRKLAAARAWFEFLRRAGLVESNPARLAQPPKLEKKLPARL 120

Query: 130 NEKQALTLVD-----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           +  +A  LVD             +      R++A+L LLY  GLR+ E ++L   ++  D
Sbjct: 121 SVDEAFHLVDGPNRPRPGRRDDAKATARRLRDAAVLELLYSSGLRVGELVALDRPDLRLD 180

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
               R++ GKG K R+VP+     +A+  Y    P  L             G  L+    
Sbjct: 181 LGVARVRQGKGGKERVVPVGAKAAQALERYLAARPALLAGEAAALF-LNNAGGRLSVRGV 239

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           Q+ +   +  L +      H LRH+ ATHLL  G DLRS+Q +LGH  LSTTQ Y ++  
Sbjct: 240 QKIVAANQDGLAIGRRIGPHALRHAMATHLLEGGADLRSVQEMLGHASLSTTQKYLHLT- 298

Query: 304 KNGGDWMMEIYDQTHPSITQKDKKN 328
               D ++++YDQ HP      +++
Sbjct: 299 ---MDHLLKVYDQAHPRARSAQEED 320


>gi|167854818|ref|ZP_02477596.1| site-specific tyrosine recombinase XerC [Haemophilus parasuis
           29755]
 gi|167854116|gb|EDS25352.1| site-specific tyrosine recombinase XerC [Haemophilus parasuis
           29755]
          Length = 261

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 75/270 (27%), Positives = 134/270 (49%), Gaps = 12/270 (4%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           ++  I   ++L  + +R  +S+   Q +  +S+   L  ++ FL +L K+     +  L 
Sbjct: 3   QQAEITCWQELDASTVRWILSQSHKQGLSAKSIGLRLVALRQFLAFLVKQGELKVNPTLG 62

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +++ K +  LP+ ++ +Q   L++          + +D R+ A++ L+Y  GLR+SE   
Sbjct: 63  IKSPKANKHLPKNIDAEQIGQLLNI------DSNEPLDLRDVAMMELMYSSGLRLSELQG 116

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           L   ++      +R+ GKG+K RIVP+      AI ++  +            +F   RG
Sbjct: 117 LDLGDMDLPNREVRLLGKGNKERIVPIGSKALDAIEQWLAVRGQ--FHPKDNAVFLNQRG 174

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             L+    Q  +++  +   L      H LRHSFATH+L    DLR++Q +LGH  LSTT
Sbjct: 175 GRLSHRSIQLAMKKWGQKQALDTHLHPHKLRHSFATHMLEASQDLRAVQELLGHSSLSTT 234

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           QIYT+++ +    ++  IYD  HP   +  
Sbjct: 235 QIYTHLDFQ----YLARIYDLAHPRAKRNK 260


>gi|329946754|ref|ZP_08294166.1| site-specific recombinase, phage integrase family [Actinomyces sp.
           oral taxon 170 str. F0386]
 gi|328526565|gb|EGF53578.1| site-specific recombinase, phage integrase family [Actinomyces sp.
           oral taxon 170 str. F0386]
          Length = 264

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 79/270 (29%), Positives = 131/270 (48%), Gaps = 22/270 (8%)

Query: 66  LSYTEIRAFISKRRT-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           +S  ++  F+   RT     + +   S  R+++ ++ + K+L     T++     +R  +
Sbjct: 1   MSRNDVTGFLEALRTGADGARPLASSSASRTVTAVRGWHKFLLAEGTTSQDPSATVRPPQ 60

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LP+AL+ ++   L++      S +   +  R+ A+L +LY  G RISEA+ L   +
Sbjct: 61  PGRRLPKALSIEEVRRLLE----AASIDDSPVSLRDRALLEVLYATGARISEAVGLVVDD 116

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPL 238
           +  D   LR+ GKG K R+VP+     +A+  Y       L    +    +F    G+PL
Sbjct: 117 LDADSRLLRLFGKGRKERVVPMGTYAWEALDAYLVRGRPALAEKGRGVPQVFLNTLGRPL 176

Query: 239 NPGVFQRYIRQLRRYLGLP-------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           +       ++Q     GL           + HTLRHSFATHLL+ G D+R +Q +LGH  
Sbjct: 177 SRQSAWAVLQQAAERAGLTGAGASTERHISPHTLRHSFATHLLAGGADVRVVQEMLGHAS 236

Query: 292 LSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           ++TTQIYT V      D + E+Y  +HP  
Sbjct: 237 VTTTQIYTKVT----VDHLREVYATSHPRA 262


>gi|254478707|ref|ZP_05092078.1| tyrosine recombinase XerD [Carboxydibrachium pacificum DSM 12653]
 gi|214035394|gb|EEB76097.1| tyrosine recombinase XerD [Carboxydibrachium pacificum DSM 12653]
          Length = 290

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 79/307 (25%), Positives = 136/307 (44%), Gaps = 29/307 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+ L+  + LSK TL+SY  D  QFL ++  +     + +       + I  ++   +
Sbjct: 8   EFLEFLKKNKRLSKNTLESYSRDVEQFLTYMNEHGINFCSAK------KSTIVNYLYFLK 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q     ++ R+LS IK+F  YL  +K   E     +   K     P  L  +Q      
Sbjct: 62  QQGKSQATISRALSSIKAFYHYLFAKKKIEEDPSYGINAPKVEKKEPVTLTVEQV----- 116

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           ++LL           R+ A++ L+Y  GL++SE +SL  +++      + ++    K R+
Sbjct: 117 DMLLSFDFGKDEKGLRDKALIELMYASGLKVSEVISLKIEDVNLASGYIVVRS--GKERV 174

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +P+      A+ EY +          +  LF  +RGK L      + I++    +   LS
Sbjct: 175 IPIGSYAVAALQEYIEKG--RKPRKGEKALFLNLRGKRLTRQGCWKIIKEYADKISPGLS 232

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY-----TNVNSKNGGDWMMEIY 314
            T + LR SFA H+L NG DL+++Q +LG         Y      N+ S      M E+Y
Sbjct: 233 LTPNILRKSFAQHMLQNGADLKTVQEMLG---------YEANFGNNLLSLVSRSKMKEVY 283

Query: 315 DQTHPSI 321
           ++ HP  
Sbjct: 284 NKFHPRA 290


>gi|296115017|ref|ZP_06833660.1| integrase/recombinase XerD [Gluconacetobacter hansenii ATCC 23769]
 gi|295978435|gb|EFG85170.1| integrase/recombinase XerD [Gluconacetobacter hansenii ATCC 23769]
          Length = 304

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 87/306 (28%), Positives = 137/306 (44%), Gaps = 18/306 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L+ L  ERG +  TL++Y  D       LA      +   ++ Q S  ++ A++S 
Sbjct: 6   VDAFLEMLAAERGAALNTLKAYRRDLDDLGTALA------VEGASLPQASARQLGAYLSG 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +  R+  R LS ++ +  +L +     ++    +   +   +LPR L+E     L
Sbjct: 60  LAQAGLSARTQARRLSCLRQYYLFLVREGRRPDNPASMLEAPRLGATLPRFLSEGDVDAL 119

Query: 138 VDNVLLHTSHETKWIDAR--NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +   +         +         L +LY  GLRISE LSL    +      L ++GKG 
Sbjct: 120 LAACVARADAGAHEVRRMLVARTALEILYASGLRISELLSLPRAALERTTGMLLVRGKGG 179

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYL 254
           + R+VPL    R A  E   +          + LF G      +    F R +  +    
Sbjct: 180 RERMVPLSSRARDAADELMRMDRPLR----SMFLFPGRNPLRAMTRQGFDRILHDVALKA 235

Query: 255 GL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GL P   + H LRHSFATHLLS+G DLR++Q +LGH  ++TTQIYT+V ++     + E 
Sbjct: 236 GLDPQRLSPHVLRHSFATHLLSHGADLRALQVLLGHADITTTQIYTHVLTER----LQEA 291

Query: 314 YDQTHP 319
               HP
Sbjct: 292 LRHHHP 297


>gi|325136023|gb|EGC58633.1| tyrosine recombinase XerD [Neisseria meningitidis M0579]
 gi|325202450|gb|ADY97904.1| tyrosine recombinase XerD [Neisseria meningitidis M01-240149]
 gi|325207798|gb|ADZ03250.1| tyrosine recombinase XerD [Neisseria meningitidis NZ-05/33]
          Length = 291

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 79/300 (26%), Positives = 133/300 (44%), Gaps = 20/300 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L ++R LS+ TL  Y  D  +    L+               +   +          
Sbjct: 10  LETLWLDRRLSQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYV---------D 60

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                S  R+LS  K    ++++  I T++    ++  K   ++P  + E+Q   L+   
Sbjct: 61  GEQRSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLL--- 117

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
              T         R+ A+L L+Y  GLR+SEA+ L   N+  D+  +   GKGDK R+VP
Sbjct: 118 --ATPDTDTPHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVP 175

Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +       +  YY    P  L       LF   +   ++  +    +++     G+    
Sbjct: 176 MGQESAYWVERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYASQAGIG-HI 234

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H+LRH+FATHL+ +G DLR +Q +LGH  L+TTQIYT+V +     W+  +  + H  
Sbjct: 235 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVAN----VWLQGVVKEHHSR 290


>gi|242280626|ref|YP_002992755.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
 gi|242123520|gb|ACS81216.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
          Length = 307

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 91/314 (28%), Positives = 154/314 (49%), Gaps = 18/314 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L +    +L +  IER LS+LT+++Y+ D  QF  F+   T+   +I  I +    +  
Sbjct: 2   KLEESIHTFLNHCIIERNLSELTMKAYQKDLLQFKHFIPDSTD---SIHDINKFILRDYI 58

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNE 131
            FIS +       RS+KR ++ +KSF  ++++  I   S    +   + +S  LP+ +++
Sbjct: 59  KFISNQ----YKPRSIKRKIATLKSFFNFMERDDIIETSPFRKIHLKIDRSKILPKTISK 114

Query: 132 KQALTLV-----DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
                L+     +      S        R+ AI+  L+  G+R+SE   +T  ++     
Sbjct: 115 SSINNLLKYTYTERAKYQLSGRGYREATRDIAIIETLFMTGIRVSELCQITTSSMDLINE 174

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            ++I GKG K R++P+  +    IL  Y+    D +L    P F     +P++    +R 
Sbjct: 175 QIKITGKGKKERVIPICANNALLILREYETLYRD-HLLPDSPFFLNRDKRPISDQSVRRI 233

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           IR+     G+P   T H  RH+ AT LL NG D+R+IQ++LGH  LS T+IYT+V+  + 
Sbjct: 234 IRKYCSMCGIPEHVTPHMFRHTIATMLLENGVDIRNIQTLLGHSSLSVTEIYTHVSLSSQ 293

Query: 307 GDWMMEIYDQTHPS 320
                EI    HP 
Sbjct: 294 ----REILSMKHPR 303


>gi|2251178|emb|CAB10656.1| XerC protein [Mycobacterium leprae]
          Length = 302

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 134/305 (43%), Gaps = 12/305 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              + ++L +  G S+ T ++Y  D R  L  L            + QLS   +R++++ 
Sbjct: 9   LDEFDEHLALRCGRSEHTRRAYLGDLRSLLTHLEGRGSR------LDQLSLPVLRSWLAT 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    +L R +S +K+F  + K R          ++  +   +LP  L + QAL +
Sbjct: 63  AAGAGAARTTLARRISAVKAFTAWAKWRGQLAADPAARLQVPRAYRTLPAVLRQDQALQI 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +       + +   +  R+  I+ +LY  G+R+SE   L   ++      +R+ GKG+K 
Sbjct: 123 M-AAAKSGAEQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTRHRLVRVLGKGNKQ 181

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R  P       A+  + D     L      P L  G RG+ L+    +  + Q    +  
Sbjct: 182 RTAPFGVPAADALRGWLDDGRPALVTVESGPALLLGSRGRRLDVRQARTVVHQTVAVVAG 241

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V        +  ++DQ
Sbjct: 242 APDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHV----AVSRLRVVHDQ 297

Query: 317 THPSI 321
            HP  
Sbjct: 298 AHPRA 302


>gi|225175744|ref|ZP_03729737.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
 gi|225168668|gb|EEG77469.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
          Length = 300

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 81/312 (25%), Positives = 145/312 (46%), Gaps = 16/312 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +  E    +Q +   LEIERGLS  T++ Y  D   F   +      +  I  + QL   
Sbjct: 1   MKEESFPYQQEFTDYLEIERGLSDGTVEGYRRDLNIFTQLMVREFFPQGMI--LDQLETK 58

Query: 70  EIRAFISKRRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            +R F+   + ++  D  +  R L+ ++S+  +L+ +     + +  ++N+K +  LP  
Sbjct: 59  HVRRFLVYLKKERSNDAGTRNRKLASLRSYFSFLEIQGYVESNPVQQLKNVKTAKLLPVF 118

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L + ++  L++   +H          R+ A++ +L   G R+ E +SL   ++  +   +
Sbjct: 119 LTKDESDRLINAARMHNKPP-----YRDYAMMRVLLQTGCRLDEMVSLNLDSLNLEDRYM 173

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKG+K R++PL      A+ EY      +     +  +F   RG+ ++    Q    
Sbjct: 174 RIIGKGNKERMIPLTDKTCAALAEYLAGRLPE--DKNEQAVFLNQRGRRISHRGVQLIFN 231

Query: 249 QLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           Q  +  GL     T H LRH+  T LL+ G DL +I+ I GH  +S+T+IY +V  +   
Sbjct: 232 QTCKEAGLNKERLTVHKLRHTCFTMLLNAGVDLPTIKDIAGHENISSTEIYVHVTQREIR 291

Query: 308 DWMMEIYDQTHP 319
             M +     HP
Sbjct: 292 SAMAK-----HP 298


>gi|189501600|ref|YP_001957317.1| integrase family protein [Candidatus Amoebophilus asiaticus 5a2]
 gi|189497041|gb|ACE05588.1| integrase family protein [Candidatus Amoebophilus asiaticus 5a2]
          Length = 292

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 143/304 (47%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +N++  L  E+ LS  T+ +Y+ D  Q   +L         I  +   +   +R++I +
Sbjct: 2   LENFINFLTYEKRLSSHTICAYQTDLNQLFSYLQT----NFQIAELSHATSKLLRSWIME 57

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q + +RS+ R ++ +K+F  +L K++         +  LK    LP  L E++ L L
Sbjct: 58  LAKQGLNNRSINRKIASLKAFYGFLYKKEYIPSDITTQLTGLKVKKGLPIFLREQELLHL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D           +   R   IL LLY  G+R+ E ++L  ++I     T+R+ GK +K 
Sbjct: 118 LDEH----PFTDDFEGWRARLILELLYSTGIRLQELINLQDRDINFYDRTIRVLGKRNKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RI+PL   +   I  Y       +  N     F     KP  P +  + ++         
Sbjct: 174 RILPLPKHILPIIEGYLQQRNTII-ANAPAHFFVTTNNKPCYPMLIYKLVKSYLASYTQA 232

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FATHLL+ G DL++I+ +LGH  L+ TQ+YT+    N  + + EI+ Q 
Sbjct: 233 DRHSPHILRHTFATHLLNRGADLQAIKELLGHTSLAATQVYTH----NSMEKLKEIFLQA 288

Query: 318 HPSI 321
           HP  
Sbjct: 289 HPRA 292


>gi|317132367|ref|YP_004091681.1| integrase family protein [Ethanoligenens harbinense YUAN-3]
 gi|315470346|gb|ADU26950.1| integrase family protein [Ethanoligenens harbinense YUAN-3]
          Length = 334

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 86/334 (25%), Positives = 154/334 (46%), Gaps = 32/334 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-------------EKITIQT 62
           K  +++L  +E  +G S  T++ YE D R F  F+                  + + I  
Sbjct: 10  KAVRDFLVYMETIKGKSPGTVREYENDLRTFFRFIKQMRGSVPRDTPFDEIAIDDVDIPF 69

Query: 63  IRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLK 120
           +  ++  +I  +++     +K    S  R +S ++SF KYL +R  I  E+   ++   K
Sbjct: 70  LASITLADIYEYLNYITNERKNRAASRARKVSSLRSFYKYLCERAGILQENPTRDLEAPK 129

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +  SLP+ L  ++++ ++               AR+  I+ L   CG+R+SE + L   +
Sbjct: 130 QKKSLPKYLTLEESMEVLR-------DIDGKFAARDYCIMTLFLNCGMRLSELVGLNLSD 182

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I    ST+ + GKG+K R + L  +  +A+  Y  +   D ++  +  LF   R + ++P
Sbjct: 183 I--RNSTMTVTGKGNKQRTIYLNEACLQALERYLAVRAKD-SVKDRDALFLSNRLQRISP 239

Query: 241 GVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
              Q  + +     GL     + H LRH+ AT L  +G  D+R +Q ILGH  LSTT+IY
Sbjct: 240 KTVQAIVYKYLERAGLSGRGLSVHKLRHTAATLLYQHGHVDVRVLQEILGHENLSTTEIY 299

Query: 299 TNVNSKNGGDW-----MMEIYDQTHPSITQKDKK 327
           T+++ +   D      +     Q  P   +K + 
Sbjct: 300 THLSDRQLQDAVNRSPLAHFSGQKAPRDKEKPED 333


>gi|307546851|ref|YP_003899330.1| integrase/recombinase XerC [Halomonas elongata DSM 2581]
 gi|307218875|emb|CBV44145.1| K03733 integrase/recombinase XerC [Halomonas elongata DSM 2581]
          Length = 308

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 90/301 (29%), Positives = 141/301 (46%), Gaps = 15/301 (4%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P   S  L +E   +L+ L   R  S  T+ +Y  D    L FL  +      I     L
Sbjct: 4   PLDTSTPLGREADAFLEALS--RTASPATVDAYRRDLAALLDFLDRH-----DIGDPAAL 56

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
               +R F+   R++ +  RSL R  + +  F ++L        + +  +R  +    LP
Sbjct: 57  DAALLRRFLGGERSRGLAPRSLARRRAALSRFAEHLMACGYLDHNPVSLVRTPRVPRDLP 116

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R ++       +D     T H+   +  R+ A+L L Y  GLR++E  +L   +I     
Sbjct: 117 RPVDVDALARFLD-----TPHDGSPLACRDQAMLELFYSSGLRLAELAALDLDDIH--AR 169

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            +R+ GKG K R VP+     +A+ ++  L    L  + +  LF G RG  L     Q+ 
Sbjct: 170 RVRVLGKGGKPRQVPVGRRADQALTDWLSLR-GALAADGEPALFVGARGNRLGHRAIQQR 228

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +RQL    GL      H LRHSFA+HLL +  DLR++Q +LGH  LSTTQ+YT ++ ++ 
Sbjct: 229 MRQLALTRGLAEHLHPHRLRHSFASHLLESSQDLRAVQELLGHANLSTTQVYTRLDWQHL 288

Query: 307 G 307
            
Sbjct: 289 A 289


>gi|295133019|ref|YP_003583695.1| tyrosine recombinase XerC [Zunongwangia profunda SM-A87]
 gi|294981034|gb|ADF51499.1| tyrosine recombinase XerC [Zunongwangia profunda SM-A87]
          Length = 297

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 147/305 (48%), Gaps = 14/305 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +   L +E+  S  TL++YE D   F  FL      +     ++ + Y +IR +I    
Sbjct: 5   KFKDYLLLEKNYSLHTLKAYEADLLSFHEFLLA----EFECSDLKNVDYAQIRNWIVSLS 60

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              + +RS+ R +S +KS+  +L+K    + S +   R LK +  L    ++ +  T+++
Sbjct: 61  ESGVSNRSINRKISSLKSYYYFLQKVGELSISPLQKHRPLKMAKKLQVPFSKVEVATVIN 120

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           ++         +   R+ AI+ L Y  GLR  E ++L   ++   +  +++ GK +K R 
Sbjct: 121 DI-----DTDSFEGIRDKAIIELFYSAGLRRIELINLGINDLDLARLNIKVLGKRNKERY 175

Query: 200 VPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +PLL SV K I  Y +     + +      LF   +G  ++  +  R I      +   +
Sbjct: 176 LPLLKSVAKTIELYIEQRSHIVPDTAKTSRLFISSKGDKMSESLVYRIINTYFSKVSAKV 235

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRHSFATHLL+ G +L +++ +LGH  L+ TQIYT+    N    +  I+ + H
Sbjct: 236 KKSPHILRHSFATHLLNEGANLNAVKELLGHSSLAATQIYTH----NSIAELKNIHSKAH 291

Query: 319 PSITQ 323
           P   +
Sbjct: 292 PRNNK 296


>gi|261417486|ref|YP_003251169.1| integrase family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373942|gb|ACX76687.1| integrase family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327853|gb|ADL27054.1| site-specific recombinase, phage integrase family [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 297

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 146/304 (48%), Gaps = 20/304 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L +L +ER LS +T+QSY+ D R F+ +L            ++ L   ++  F++ 
Sbjct: 8   LDAFLSHLGVERNLSPVTIQSYQEDLRHFIAWLDENGI------DLKDLQPEKLDEFLTL 61

Query: 78  RRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              Q+     S+ R  S ++ FLKY++ +     S    +   K  + LP+ L  ++  +
Sbjct: 62  TAGQEEYSPTSVARHFSSLRGFLKYMQIQGEYDYSTESMLATPKLGHYLPQYLTREEIDS 121

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           + +      S        R++A++ L+Y  GLRISEAL +    I  +   L   GKG+K
Sbjct: 122 VFE------SAANGKNPLRDTALIELMYSGGLRISEALGIKLSQIDLENEWLMPIGKGNK 175

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+VPL    ++ +  + +     L       +     GKP++     + ++    +  L
Sbjct: 176 QRLVPLGSKAKENLRAWIEEG-RPLTHPTTDNIILNAHGKPMSRMGAWKIVQLHTMH--L 232

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HT RHSFATH L  G DLR +Q +LGH  +STTQIYT+V+     D++ + +  
Sbjct: 233 SKQVSPHTFRHSFATHCLEAGMDLRVLQELLGHADISTTQIYTHVD----KDFIKQEHRS 288

Query: 317 THPS 320
            HP 
Sbjct: 289 FHPR 292


>gi|219871693|ref|YP_002476068.1| putative site-specific tyrosine recombinase XerC [Haemophilus
           parasuis SH0165]
 gi|219691897|gb|ACL33120.1| possible site-specific tyrosine recombinase XerC [Haemophilus
           parasuis SH0165]
          Length = 261

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 74/270 (27%), Positives = 134/270 (49%), Gaps = 12/270 (4%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           ++  +   ++L  + +R  +S+   Q +  +S+   L  ++ FL +L K+     +  L 
Sbjct: 3   QQAEVTRWQELDASTVRWILSQSHKQGLSAKSIGLRLVALRQFLAFLVKQGELKVNPTLG 62

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +++ K +  LP+ ++ +Q   L++          + +D R+ A++ L+Y  GLR+SE   
Sbjct: 63  IKSPKANKHLPKNIDAEQIGQLLNI------DSNEPLDLRDVAMMELMYSSGLRLSELQG 116

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           L   ++      +R+ GKG+K RIVP+      AI ++  +            +F   RG
Sbjct: 117 LDLGDMDLPNREVRLLGKGNKERIVPIGSKALDAIEQWLAVRGQ--FHPKDNAVFLNQRG 174

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             L+    Q  +++  +   L      H LRHSFATH+L    DLR++Q +LGH  LSTT
Sbjct: 175 GRLSHRSIQLAMKKWGQKQALDTHLHPHKLRHSFATHMLEASQDLRAVQELLGHSSLSTT 234

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           QIYT+++ +    ++  IYD  HP   +  
Sbjct: 235 QIYTHLDFQ----YLARIYDLAHPRAKRNK 260


>gi|254696281|ref|ZP_05158109.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 2
           str. 86/8/59]
          Length = 307

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 90/312 (28%), Positives = 138/312 (44%), Gaps = 16/312 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             +N+L+ +  ERG ++ TL+SY  D       LA           + +     IR  + 
Sbjct: 6   AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKG------VNLAEAETGHIRMTLD 59

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               Q     S  R LS ++ F ++L       +     +   KK   LP+ ++ +    
Sbjct: 60  TMAAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGK 119

Query: 137 LVDNVLLHTSHETKW----IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           L+D   L  +   +        R  A+L  LY  GLR+SE + L       D   L ++G
Sbjct: 120 LLDRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRG 179

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLR 251
           KG K R+VPL    R A+ ++  L       +    LF        L   VF R ++ L 
Sbjct: 180 KGSKDRMVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPTFSESGHLARQVFARELKGLA 239

Query: 252 RYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              GL  S+   H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V  +     +
Sbjct: 240 ARAGLAASSASPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER----L 295

Query: 311 MEIYDQTHPSIT 322
            ++  + HP   
Sbjct: 296 HKLVSEHHPLAD 307


>gi|260760651|ref|ZP_05872994.1| integrase/recombinase xerD [Brucella abortus bv. 2 str. 86/8/59]
 gi|260671083|gb|EEX57904.1| integrase/recombinase xerD [Brucella abortus bv. 2 str. 86/8/59]
          Length = 309

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 90/312 (28%), Positives = 138/312 (44%), Gaps = 16/312 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             +N+L+ +  ERG ++ TL+SY  D       LA           + +     IR  + 
Sbjct: 8   AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKG------VNLAEAETGHIRMTLD 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               Q     S  R LS ++ F ++L       +     +   KK   LP+ ++ +    
Sbjct: 62  TMAAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGK 121

Query: 137 LVDNVLLHTSHETKW----IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           L+D   L  +   +        R  A+L  LY  GLR+SE + L       D   L ++G
Sbjct: 122 LLDRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRG 181

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLR 251
           KG K R+VPL    R A+ ++  L       +    LF        L   VF R ++ L 
Sbjct: 182 KGSKDRMVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPTFSESGHLARQVFARELKGLA 241

Query: 252 RYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              GL  S+   H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V  +     +
Sbjct: 242 ARAGLAASSASPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER----L 297

Query: 311 MEIYDQTHPSIT 322
            ++  + HP   
Sbjct: 298 HKLVSEHHPLAD 309


>gi|300871744|ref|YP_003786617.1| tyrosine recombinase XerD [Brachyspira pilosicoli 95/1000]
 gi|300689445|gb|ADK32116.1| tyrosine recombinase, XerD [Brachyspira pilosicoli 95/1000]
          Length = 307

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 89/324 (27%), Positives = 157/324 (48%), Gaps = 19/324 (5%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ME N L  I + EL    + +   L+     +  T+ SY  D ++++ FL          
Sbjct: 1   ME-NQLKRIEANELENLLEEFADYLQTL-NYAAHTINSYTKDLKEYIKFLEDNNI----- 53

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
                 ++  IR + +  + +K+ + +  R LS IK F KYL +   + ++ I+NM++ K
Sbjct: 54  -DFNDATHYTIRDYFASLKNKKLKNATTSRHLSSIKKFYKYLIRNGYSDKTRIINMKSPK 112

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +   + + L+      +++        E  +   R+  +   +Y  GLR SE +S+    
Sbjct: 113 REEHIAKFLSLNDIDKILEI-----DDENDFTIIRDKMMAIFMYAIGLRASELISIKLNM 167

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPL 238
           +    +TLRI GKG K+R +PL+P +      Y            +    LF    GKP+
Sbjct: 168 MHKGSTTLRILGKGSKVREIPLIPIIYDNWDLYMQKRAIIQREYGSNNNYLFVNRFGKPI 227

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +    +  +++L R   + +  + HTLRH+FATHLL+N  ++R +Q +LGH  +STTQ Y
Sbjct: 228 SDRSVRNSMKRLMRMANISVDFSPHTLRHTFATHLLNNDAEIRGVQELLGHESISTTQRY 287

Query: 299 TNVNSKNGGDWMMEIYDQTHPSIT 322
           T+V +    D + E+Y++ HP   
Sbjct: 288 THVTN----DRLFEVYNRAHPHSK 307


>gi|308388941|gb|ADO31261.1| putative integrase/recombinase [Neisseria meningitidis alpha710]
          Length = 291

 Score =  219 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 79/300 (26%), Positives = 133/300 (44%), Gaps = 20/300 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L ++R LS+ TL  Y  D  +    L+               +   +          
Sbjct: 10  LETLWLDRRLSQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYV---------D 60

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                S  R+LS  K    ++++  I T++    ++  K   ++P  + E+Q   L+   
Sbjct: 61  GEQRSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLL--- 117

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
              T         R+ A+L L+Y  GLR+SEA+ L   N+  D+  +   GKGDK R+VP
Sbjct: 118 --ATPDTDTPHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVP 175

Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +       +  YY    P  L       LF   +   ++  +    +++     G+    
Sbjct: 176 MGQESAYWVGRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIG-HI 234

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H+LRH+FATHL+ +G DLR +Q +LGH  L+TTQIYT+V +     W+  +  + H  
Sbjct: 235 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVAN----VWLQGVVKEHHSR 290


>gi|215412737|ref|ZP_03421449.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           94_M4241A]
 gi|298526363|ref|ZP_07013772.1| integrase/recombinase xerC [Mycobacterium tuberculosis 94_M4241A]
 gi|298496157|gb|EFI31451.1| integrase/recombinase xerC [Mycobacterium tuberculosis 94_M4241A]
          Length = 298

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 79/309 (25%), Positives = 134/309 (43%), Gaps = 12/309 (3%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +      + + L ++ G S  T ++Y  D R    FLA          ++  L+ + +R+
Sbjct: 1   MQAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRG------SSLDALTLSVLRS 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++          +L R  S +K+F  +  +R +        ++  K   +LP  L + Q
Sbjct: 55  WLAATAGAGAARTTLARRTSAVKAFTAWAVRRVLLAGDPAARLQVPKVRRTLPAELRQDQ 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           AL  +       + +   +  R+  I+ LLY  G+R+SE   L   +I      +R+ GK
Sbjct: 115 ALRAM-AAAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGK 173

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G+K R VP       A+  +       L        L  G RG+ L+    +  + Q   
Sbjct: 174 GNKQRTVPFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVA 233

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            +        H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V        +  
Sbjct: 234 AVDGAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVAR----LRA 289

Query: 313 IYDQTHPSI 321
           ++++ HP  
Sbjct: 290 VHERAHPRA 298


>gi|323143041|ref|ZP_08077746.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei
           YIT 12066]
 gi|322417182|gb|EFY07811.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei
           YIT 12066]
          Length = 307

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 82/320 (25%), Positives = 149/320 (46%), Gaps = 19/320 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL ++  +++  L  E+     T+ SY+   R+ L+ L +   +   +++  ++   E+R
Sbjct: 3   ELERDADSFIAYLSNEKRSGPNTVASYDRVLRKALVSLKYNFPQ---LKSWSEIGEKEMR 59

Query: 73  AFISKRR----TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             + +       +++   S+   +  + SF K+L K+K  + +    +   K    LP+ 
Sbjct: 60  FLLKEFNFSFDAERLSSVSVAHDIYALSSFFKFLIKKKKLSSNPCSLIHAPKVRKPLPKV 119

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+  +   L       T   +   + R+ AI  LL+  GLR+ E ++L   ++ +    +
Sbjct: 120 LSSNEIDQLF------TVDPSSPKEIRDRAIAELLFSSGLRVGELVALNLGDLDETAQEV 173

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R+ GKG K R VP+       I  Y  +   D        LF    G+ +     Q+ + 
Sbjct: 174 RVFGKGGKERSVPVGSQALNWIRIYLKVR--DAFNPEDTALFLNRFGRRMTTRAVQQNLD 231

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L    GL +  + H LRHSFAT LL NG DLR +Q +LGH  L+ TQ+YT++N      
Sbjct: 232 KLASKSGLSIKISPHKLRHSFATELLGNGADLRMVQEMLGHSSLAATQVYTHINFA---- 287

Query: 309 WMMEIYDQTHPSITQKDKKN 328
            + EI+ + HP      +++
Sbjct: 288 KLQEIFSKAHPRAKLHKEES 307


>gi|309389348|gb|ADO77228.1| integrase family protein [Halanaerobium praevalens DSM 2228]
          Length = 312

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 85/308 (27%), Positives = 145/308 (47%), Gaps = 11/308 (3%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
            L+    + + L++E+G S+LT++ Y  D  Q   +L    + K   +   ++   +I  
Sbjct: 9   FLQALNKFKKYLKVEKGYSQLTIKEYNSDLNQLHKYLKEELDFKADFKP-AEVDRLDISE 67

Query: 74  FISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-PRALNE 131
           F++           +  R L  I+SF KYL    I  ++    + + K    L P  L  
Sbjct: 68  FLADAVIINDNKAVTRNRKLFAIRSFYKYLLHYGIVNQNPAEAIESSKTEIRLEPIYLKL 127

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           K+A   ++ +    S        R+ AI+ L    GLRISE ++L   N+  +  +++  
Sbjct: 128 KEAKQFINAI----SENGGINRLRDLAIVKLFLYAGLRISELVNLDFDNLDFEDCSIKFY 183

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           GKG+K R VPL   V  AI +Y            + +  +F    GK ++P   Q ++++
Sbjct: 184 GKGNKERYVPLHHDVILAIKKYLPERNSIKIKENDARQAIFISRHGKRISPRTIQLFVKK 243

Query: 250 LRRYLGLPL--STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
             +  GL      T H LRH+FA+ L     D++ +Q +LGH  LSTTQIYT+V+++   
Sbjct: 244 YAKKSGLGRADKITPHKLRHTFASTLYRQTKDIKVVQDLLGHANLSTTQIYTHVDTEEKK 303

Query: 308 DWMMEIYD 315
             + E+ D
Sbjct: 304 SAIDEMPD 311


>gi|323705319|ref|ZP_08116894.1| integrase family protein [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535221|gb|EGB24997.1| integrase family protein [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 288

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 139/304 (45%), Gaps = 20/304 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q ++  L+ E+ LS  T++SY+ D  QF+ +L     E   +  I       I ++++ 
Sbjct: 5   VQAFIDFLKNEKKLSDNTVESYKRDITQFIGYLKENNIEYYDVNKIT------IISYLNF 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            + + +   ++ R LS IKSF +YL   K   +     +   K    +P  L+ +Q   L
Sbjct: 59  LKHKNMSQSTISRHLSSIKSFYQYLFMNKFIDKEPAYTLDAPKIEKKVPLTLSVEQVDKL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           + +       E      R+ AIL +LY  GL++SE +SL  +++  +   +    K  K 
Sbjct: 119 LSH-----EFENSEKGLRDKAILEVLYATGLKVSELISLHIKDVNLNYGYIYC--KSSKE 171

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R +P+  S   A+  Y  +      ++    LF  +RG+PL      + I++    +   
Sbjct: 172 RFIPIGDSALNALQNYISVRR---KIDQDEFLFLNLRGEPLTRQGCWKIIKEYTNIVNPG 228

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T   LR SFA H+L NG D+RS+Q ILG+   +      ++ S      + E+Y ++
Sbjct: 229 FDITPSILRKSFAKHMLENGADIRSVQEILGYKSFNQ----GDLISLISKSKIKEVYKRS 284

Query: 318 HPSI 321
           HP  
Sbjct: 285 HPRA 288


>gi|297182869|gb|ADI19020.1| site-specific recombinase xerd [uncultured alpha proteobacterium
           HF0070_05I22]
          Length = 314

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 79/309 (25%), Positives = 145/309 (46%), Gaps = 18/309 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L   R +S  TL +Y  D       L        +  T+   +  ++R  IS    
Sbjct: 19  FLDALVAMRAVSANTLAAYRRDLADTSQLL------HASKTTLTDCNADDLRQVISLWHQ 72

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  RS+ R LS ++ F+ +    +I T++    + N      LP++L+E + + L+  
Sbjct: 73  RGLSARSVARRLSALRQFMGWAVDDQIRTDNPCRWIDNPSLPALLPKSLSEDEVMKLL-- 130

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                + +   +  R  A+L +LY  GLR+SE + L          ++ + GKG + R+V
Sbjct: 131 -AAANAMQPPALSCRAVAMLEILYATGLRVSELVHLQVSQFRRQPDSILVAGKGGRERLV 189

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP----LNPGVFQRYIRQLRRYLGL 256
           PL  + ++A  ++ +L        +   +F G+        +    F + ++ +     +
Sbjct: 190 PLGLAAKRAAADWLELRDATFGYLLSDYMFPGVSSTAAGGAMTRHEFAQLLKTIAVAAQI 249

Query: 257 -PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            P   T H +RHSFATH+L+ G DLRS+Q++LGH  ++TTQIYT     +  D +  +  
Sbjct: 250 DPRRVTPHKIRHSFATHMLNRGADLRSLQNMLGHADIATTQIYT----SSRPDRLAGLVA 305

Query: 316 QTHPSITQK 324
             HP  +++
Sbjct: 306 DAHPLASKR 314


>gi|311113293|ref|YP_003984515.1| tyrosine recombinase XerD [Rothia dentocariosa ATCC 17931]
 gi|310944787|gb|ADP41081.1| tyrosine recombinase XerD [Rothia dentocariosa ATCC 17931]
          Length = 391

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 89/384 (23%), Positives = 150/384 (39%), Gaps = 82/384 (21%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDT-----------------------RQFLIFL 50
           L ++ + +L +L +E+G S+ T+ SY  D                        R F+  L
Sbjct: 16  LERDIEQYLIHLRVEKGSSENTIASYARDLRRYVEFMASRGIIDAHRIRTADVRAFMREL 75

Query: 51  AFYT-----------------EEKITIQTIRQLSYTE-IRAFISKRRTQK---------- 82
           A  +                  EK +    R     + + +      T            
Sbjct: 76  AQPSLPRAGENRDSGHPSKSQGEKPSESDTRAEELEDTLESLAVSLYTSDQTKAPSTSTR 135

Query: 83  -------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                  +G  S+ R+++ ++    +    +I        ++  K    LP+A++ +Q  
Sbjct: 136 DVTLPLPLGPNSIARTMAAVRGAHSFWHASRILETDPAAAVKPPKNVKRLPKAVSVEQMQ 195

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ---------- 185
            L+    L T         RN AIL  LY  G R+SE L+    +I   +          
Sbjct: 196 KLLAIPSLKTP-----TGLRNRAILEFLYATGARVSEMLATDLDDIHLGEKPRDENGESI 250

Query: 186 ---STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNP 240
                +R+ GKG K R+VPL    ++A+ +Y       F  +      LF   RG  L  
Sbjct: 251 AVPGYVRLFGKGGKERLVPLGSYAQRALEDYIVRARPKFASHGKGTAALFLNGRGSRLGR 310

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                 +++     GL    + H++RHSFATHL+  G D+R +Q +LGH  ++TTQ+YT 
Sbjct: 311 QGAWLILKETAEEAGLSSDFSPHSIRHSFATHLVQGGADIRVVQELLGHASIATTQVYTK 370

Query: 301 VNSKNGGDWMMEIYDQTHPSITQK 324
           V  +     M+E+Y   HP   ++
Sbjct: 371 VTPE----GMLEVYRMAHPRAHER 390


>gi|169828358|ref|YP_001698516.1| site-specific tyrosine recombinase XerC [Lysinibacillus sphaericus
           C3-41]
 gi|168992846|gb|ACA40386.1| Tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41]
          Length = 320

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 85/326 (26%), Positives = 148/326 (45%), Gaps = 31/326 (9%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE---- 56
           M+   LP+I+        +++L  L   +G S+ T + YE D   F  F     E+    
Sbjct: 1   MQKTKLPKIM--------KDFLVYLTTIKGKSQRTRKEYEYDLSLFFRFHTAVQEDLNIE 52

Query: 57  --------KITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLK-KRK 106
                    I+I+ IR+++  ++  F+     Q      S  R ++ +KSF KYLK KR+
Sbjct: 53  NLAAIDIATISIEEIREITLEDLYYFMEYCEVQRGNSAASRARKVATLKSFFKYLKGKRR 112

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
           +  E+    + + K     P  +N ++A   +D + ++ +        RN  ++      
Sbjct: 113 LIEENPAEELESPKIGRKRPIYMNFREATQFIDGIPVNQA------SPRNYCMMMFFLNL 166

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G+R++E   L   +I      L + GKG+K R V L  S  +A+ +Y +        N  
Sbjct: 167 GIRVTELCQLNITSI--QGRHLTVVGKGNKERTVYLNDSCMQALADYENSGKTPYKGNGD 224

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQS 285
            PLF   +G         + ++++ +  GL     T H LRH+ AT +   G D+RS+Q 
Sbjct: 225 EPLFVSQKGTRFTRQTVAKIVKRINQQSGLQKERLTPHKLRHTSATMMYKAGADIRSLQH 284

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMM 311
           ILGH  ++TTQIYT++  +     + 
Sbjct: 285 ILGHSSVATTQIYTHIEDEQLQQVLE 310


>gi|225175747|ref|ZP_03729740.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
 gi|225168671|gb|EEG77472.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
          Length = 300

 Score =  219 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 79/312 (25%), Positives = 142/312 (45%), Gaps = 16/312 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++ E     Q ++  LEIERGLS  T+  Y  D   F   +      +  +  + QL   
Sbjct: 1   MTSESFPYEQEFVDYLEIERGLSDRTVDGYRMDIGVFARLMVREFFPQGMV--LNQLETK 58

Query: 70  EIRAFISKRRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            +R F+   + ++  +  +  R L+ ++S+ K+L+      ++ +  +RN+K +  LP  
Sbjct: 59  HVRRFLVYLKKERDNNAGTRNRKLASLRSYFKFLEIHGYVEKNPVQQLRNVKTAKLLPVF 118

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L   ++  L+     + + +      R+ A++ +L   G R+ E +SL   N+  ++  +
Sbjct: 119 LTIDESDRLI-----NAAKKQAKPPYRDHAMMRVLLQTGCRVEELVSLNIGNLNLEEKYM 173

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           RI GKG+K R++PL      A+ EY +          +  +F    G  +     Q    
Sbjct: 174 RIIGKGNKERMIPLTDKTCAALAEYLEARVP--KDEKEKAVFLNHLGMRITYPGVQLVFN 231

Query: 249 QLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +L    GL     T H LRH+  T L++ G DL +I+ I GH  +S+T+IY +V  +   
Sbjct: 232 RLCEEAGLNRGRLTVHKLRHTCFTMLMNAGVDLPTIKDIAGHESISSTEIYVHVTQRGVR 291

Query: 308 DWMMEIYDQTHP 319
             M       HP
Sbjct: 292 KAMAR-----HP 298


>gi|162456070|ref|YP_001618437.1| integrase/recombinase [Sorangium cellulosum 'So ce 56']
 gi|161166652|emb|CAN97957.1| integrase/recombinase [Sorangium cellulosum 'So ce 56']
          Length = 358

 Score =  219 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 88/351 (25%), Positives = 141/351 (40%), Gaps = 50/351 (14%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-------- 65
           L +    +L  L  ER  S+ T+ +Y  D  Q   F           +  R         
Sbjct: 15  LEQAIARFLTYLAAERRASRHTVAAYRRDLEQLARFAREKAAANADHRPARARGKAPATG 74

Query: 66  -------------------------LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLK 100
                                    L    +R+++     +     S+ R +   ++ L+
Sbjct: 75  KTPATGKAPATGEAPSPDEATAVDGLDVLLLRSWLGSL-ARTHAPASIARKVGAARALLR 133

Query: 101 YLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
           YL++R    ++    +   K    LP  L+   A  +++     T+        R+ A+L
Sbjct: 134 YLERRGEVDKNAAAQLALPKVRRPLPTFLDVDAAAEVMEIPGAETAE-----GLRDRAML 188

Query: 161 YLLYGCGLRISEALSLTPQNIMD---DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
             LYG GLR+SE   L   ++     D++ +R+ GKGDK RIVPL      AI  Y +  
Sbjct: 189 ETLYGAGLRVSELCGLDLTHVDRRPADRAAVRVVGKGDKERIVPLGSHALAAIERYLERR 248

Query: 218 PFDLN----LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
               +          LF   RG  +     Q  +++             H LRH+ ATHL
Sbjct: 249 DELADPTTGARDPRALFLSRRGARIGVRRVQALVQRYGALGAGRADLHPHALRHTCATHL 308

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           L  G DLR+IQ +LGH  L+TTQ YT+V+     D ++++YD  HP   ++
Sbjct: 309 LDGGADLRAIQKLLGHASLATTQRYTHVS----IDHLLKVYDAAHPMARKR 355


>gi|163787862|ref|ZP_02182309.1| integrase [Flavobacteriales bacterium ALC-1]
 gi|159877750|gb|EDP71807.1| integrase [Flavobacteriales bacterium ALC-1]
          Length = 296

 Score =  219 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 80/303 (26%), Positives = 147/303 (48%), Gaps = 12/303 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   L +E+  SK T  +Y  D   F  FL  + + ++    + ++ Y+EIR +I K
Sbjct: 3   LKTFSDYLLLEKKYSKHTALAYIRDIEMFQDFLEEHHDSEV----LSKVGYSEIREWIVK 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I +R++ R +S + ++ K+L K +    + +   + LK    +    +E++   +
Sbjct: 59  LVNSGISNRTVNRKISSLNTYFKFLIKTQTIKINPLKQHKALKVGKKVQLPFSEEELKAV 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++N +        +  ARN  I+ L Y  G+R  E + +T  +I      L++ GK +K 
Sbjct: 119 LENSI----EVHDFESARNHLIIELFYATGIRRIELVEITINDIDFGNKQLKVLGKRNKE 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R +PL+ S+  +I  Y         +N +  LF   +G  +   +  R I +        
Sbjct: 175 RYIPLIDSLIISIKNYLKYRSQLETINDKEVLFLTKKGLKIYEMLVYRIINKYFSEASTK 234

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRHSFATHLL+ G DL +++ +LGH  L+ TQ+YT+    N    + ++Y ++
Sbjct: 235 AKCSPHVLRHSFATHLLNQGADLNAVKELLGHTSLAATQVYTH----NSIAELKKVYAKS 290

Query: 318 HPS 320
           HP 
Sbjct: 291 HPR 293


>gi|261392878|emb|CAX50459.1| tyrosine recombinase XerD [Neisseria meningitidis 8013]
 gi|325144209|gb|EGC66516.1| tyrosine recombinase XerD [Neisseria meningitidis M01-240013]
 gi|325203840|gb|ADY99293.1| tyrosine recombinase XerD [Neisseria meningitidis M01-240355]
 gi|325206404|gb|ADZ01857.1| tyrosine recombinase XerD [Neisseria meningitidis M04-240196]
          Length = 291

 Score =  219 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 80/300 (26%), Positives = 133/300 (44%), Gaps = 20/300 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L ++R LS+ TL  Y  D  +    L+               +   +          
Sbjct: 10  LETLWLDRRLSQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYV---------D 60

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                S  R+LS  K    ++++  I T++    ++  K   ++P  + E+Q   L    
Sbjct: 61  GEQRSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRL---- 116

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
            L T         R+ A+L L+Y  GLR+SEA+ L   N+  D+  +   GKGDK R+VP
Sbjct: 117 -LATPDTDTPHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVP 175

Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +       +  YY    P  L       LF   +   ++  +    +++     G+    
Sbjct: 176 MGQESAYWVERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYASQAGIG-HI 234

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H+LRH+FATHL+ +G DLR +Q +LGH  L+TTQIYT+V +     W+  +  + H  
Sbjct: 235 SPHSLRHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVAN----VWLQGVVKEHHSR 290


>gi|150003403|ref|YP_001298147.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
           8482]
 gi|254881306|ref|ZP_05254016.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|294777807|ref|ZP_06743251.1| putative tyrosine recombinase XerC [Bacteroides vulgatus PC510]
 gi|319640308|ref|ZP_07995033.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|149931827|gb|ABR38525.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
           8482]
 gi|254834099|gb|EET14408.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|294448261|gb|EFG16817.1| putative tyrosine recombinase XerC [Bacteroides vulgatus PC510]
 gi|317388083|gb|EFV68937.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
          Length = 293

 Score =  219 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 72/304 (23%), Positives = 139/304 (45%), Gaps = 15/304 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L  L  E+  S+ T+ SY  D  +F  +     E+         +    +R ++   
Sbjct: 4   DSFLDYLRFEKNYSEKTIVSYGIDLTKFEEYFKGKDEK----VDFTTVDADLVRGWVMNL 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S+ R LS ++SF ++L K+ +  E  +L +   K    LP  L E++   L+
Sbjct: 60  MENGYTSASVNRKLSSLRSFYRFLLKKGVIEEDPMLKIIGPKNKKPLPVFLKEREMDRLL 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D        +  +   R+  +L + Y  G+R+SE + L   ++      +++ GK +K R
Sbjct: 120 D----DVPFKEDFTGCRDRMVLEMFYATGMRLSELIGLNDVDVDFSAFLIKVTGKRNKQR 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR-QLRRYLGLP 257
           ++P    +R+A+  Y  +    L    +   F    GK + PG     ++  L + + L 
Sbjct: 176 LIPFGEELRRAMSVYLKIRNEVLPGKAE-AFFVLKNGKRMYPGKVYLLVKRNLSKVVSLK 234

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FAT +L+N  +L +++ +LGH  L+T    T + +    + + ++Y+Q 
Sbjct: 235 KR-SPHVLRHTFATAMLNNEAELGAVKELLGHSSLTT----TEIYTHTTFEELKKVYEQA 289

Query: 318 HPSI 321
           HP  
Sbjct: 290 HPRA 293


>gi|237816384|ref|ZP_04595377.1| tyrosine recombinase XerD [Brucella abortus str. 2308 A]
 gi|260546138|ref|ZP_05821878.1| tyrosine recombinase xerD [Brucella abortus NCTC 8038]
 gi|260755704|ref|ZP_05868052.1| integrase/recombinase xerD [Brucella abortus bv. 6 str. 870]
 gi|260758929|ref|ZP_05871277.1| integrase/recombinase xerD [Brucella abortus bv. 4 str. 292]
 gi|260884731|ref|ZP_05896345.1| tyrosine recombinase xerD [Brucella abortus bv. 9 str. C68]
 gi|297247261|ref|ZP_06930979.1| tyrosine recombinase XerD [Brucella abortus bv. 5 str. B3196]
 gi|88952695|sp|Q2YR40|XERD_BRUA2 RecName: Full=Tyrosine recombinase xerD
 gi|90140493|sp|P0C122|XERD_BRUAB RecName: Full=Tyrosine recombinase xerD
 gi|237788451|gb|EEP62666.1| tyrosine recombinase XerD [Brucella abortus str. 2308 A]
 gi|260096245|gb|EEW80121.1| tyrosine recombinase xerD [Brucella abortus NCTC 8038]
 gi|260669247|gb|EEX56187.1| integrase/recombinase xerD [Brucella abortus bv. 4 str. 292]
 gi|260675812|gb|EEX62633.1| integrase/recombinase xerD [Brucella abortus bv. 6 str. 870]
 gi|260874259|gb|EEX81328.1| tyrosine recombinase xerD [Brucella abortus bv. 9 str. C68]
 gi|297174430|gb|EFH33777.1| tyrosine recombinase XerD [Brucella abortus bv. 5 str. B3196]
          Length = 309

 Score =  219 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 90/312 (28%), Positives = 138/312 (44%), Gaps = 16/312 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             +N+L+ +  ERG ++ TL+SY  D       LA           + +     IR  + 
Sbjct: 8   AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKG------VNLAEAETGHIRMTLD 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               Q     S  R LS ++ F ++L       +     +   KK   LP+ ++ +    
Sbjct: 62  TMAAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGK 121

Query: 137 LVDNVLLHTSHETKW----IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           L+D   L  +   +        R  A+L  LY  GLR+SE + L       D   L ++G
Sbjct: 122 LLDRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRG 181

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLR 251
           KG K R+VPL    R A+ ++  L       +    LF        L   VF R ++ L 
Sbjct: 182 KGSKDRMVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLA 241

Query: 252 RYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              GL  S+   H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V  +     +
Sbjct: 242 ARAGLAASSASPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER----L 297

Query: 311 MEIYDQTHPSIT 322
            ++  + HP   
Sbjct: 298 HKLVSEHHPLAD 309


>gi|62290876|ref|YP_222669.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 1
           str. 9-941]
 gi|82700788|ref|YP_415362.1| site-specific tyrosine recombinase XerD [Brucella melitensis biovar
           Abortus 2308]
 gi|189025091|ref|YP_001935859.1| site-specific tyrosine recombinase XerD [Brucella abortus S19]
 gi|254690165|ref|ZP_05153419.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 6
           str. 870]
 gi|254694656|ref|ZP_05156484.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 3
           str. Tulya]
 gi|254731198|ref|ZP_05189776.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 4
           str. 292]
 gi|256258419|ref|ZP_05463955.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 9
           str. C68]
 gi|261214980|ref|ZP_05929261.1| integrase/recombinase xerD [Brucella abortus bv. 3 str. Tulya]
 gi|62197008|gb|AAX75308.1| XerD, integrase/recombinase [Brucella abortus bv. 1 str. 9-941]
 gi|82616889|emb|CAJ11988.1| Phage integrase:Phage integrase, N-terminal SAM-like [Brucella
           melitensis biovar Abortus 2308]
 gi|189020663|gb|ACD73385.1| Phage integrase [Brucella abortus S19]
 gi|260916587|gb|EEX83448.1| integrase/recombinase xerD [Brucella abortus bv. 3 str. Tulya]
          Length = 307

 Score =  219 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 90/312 (28%), Positives = 138/312 (44%), Gaps = 16/312 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             +N+L+ +  ERG ++ TL+SY  D       LA           + +     IR  + 
Sbjct: 6   AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKG------VNLAEAETGHIRMTLD 59

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               Q     S  R LS ++ F ++L       +     +   KK   LP+ ++ +    
Sbjct: 60  TMAAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGK 119

Query: 137 LVDNVLLHTSHETKW----IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           L+D   L  +   +        R  A+L  LY  GLR+SE + L       D   L ++G
Sbjct: 120 LLDRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRG 179

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLR 251
           KG K R+VPL    R A+ ++  L       +    LF        L   VF R ++ L 
Sbjct: 180 KGSKDRMVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLA 239

Query: 252 RYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              GL  S+   H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V  +     +
Sbjct: 240 ARAGLAASSASPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER----L 295

Query: 311 MEIYDQTHPSIT 322
            ++  + HP   
Sbjct: 296 HKLVSEHHPLAD 307


>gi|223986264|ref|ZP_03636278.1| hypothetical protein HOLDEFILI_03588 [Holdemania filiformis DSM
           12042]
 gi|223961759|gb|EEF66257.1| hypothetical protein HOLDEFILI_03588 [Holdemania filiformis DSM
           12042]
          Length = 304

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 84/303 (27%), Positives = 139/303 (45%), Gaps = 17/303 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +  + +L  + I+   S+ T+  Y  D  ++  FLA        I  I Q+    +  
Sbjct: 3   LEEAFRQYLIYISIQFPKSEKTIAGYRNDLSRYFQFLAQKE-----IDRIDQIDSAMLEE 57

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++     +     S+  +++ I+ F ++L  R          +  L+++ SLP      +
Sbjct: 58  YVRVL-ARDHAAASVNHAITAIRGFHQFLAFR-FDELDPAEYLEQLQRTQSLPVYCTRDE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++     H+  + +W      AI  LLYGCGLR+SE  +LT   +  +   LRI GK
Sbjct: 116 IEKIM-AQFGHSPKDIRW-----HAIAELLYGCGLRVSECAALTMNQVDLELGMLRIWGK 169

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R+VP+     K + EY D             LF    GK       +  I+ +   
Sbjct: 170 GNKERLVPMPKQTIKIVREYVDTVRPLYQKKPTSWLFITRLGKKTTTASIESMIKSVCIQ 229

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    T H LRH++ATH+L  G DLRS+Q +LGH  ++TTQIYT+++       +   
Sbjct: 230 AGIQKPITPHKLRHTYATHMLEGGADLRSVQELLGHSDITTTQIYTHID----RSRLRTA 285

Query: 314 YDQ 316
           YD+
Sbjct: 286 YDE 288


>gi|300934030|ref|ZP_07149286.1| integrase/recombinase [Corynebacterium resistens DSM 45100]
          Length = 276

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 142/291 (48%), Gaps = 20/291 (6%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG- 94
           + +Y+ D  ++  +L          + I  ++  +I   +   +  + G + + RS +  
Sbjct: 1   MSNYQRDIDRYQEWLGE--------REIADVTSNDIEQHLVWLQNDEPGHKGIARSSAAR 52

Query: 95  ----IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
               I+S   + ++ K+   +  + +   K+ +S+P+AL  +Q  +L+D      +    
Sbjct: 53  ALASIRSLHDFGEREKLLPSNVAVTVPVPKRGSSIPKALTVEQVSSLLDATPNDAAA--S 110

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
            +D R+ A+L +LY  G RISE L+L   ++   +  + ++GKG K R+VPL     +A+
Sbjct: 111 LVDIRDRAVLEMLYSTGARISELLALDVDDVDQGERMVLVRGKGAKERLVPLGSPASEAL 170

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            +Y       +N      LF  +RG  +      + + Q     GLP     H LRHSFA
Sbjct: 171 EQYVVRARPAMNKKGSPALFLNMRGGRMGRQSGFKTVMQAAERAGLP-PVNPHALRHSFA 229

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           THLL  G D+R +Q +LGH  ++TTQIYT V      D + E++  +HP +
Sbjct: 230 THLLQGGADVRVVQELLGHSSVATTQIYTKVT----ADHLREMWATSHPRV 276


>gi|188995443|ref|YP_001929695.1| putative site-specific recombinase [Porphyromonas gingivalis ATCC
           33277]
 gi|188595123|dbj|BAG34098.1| putative site-specific recombinase [Porphyromonas gingivalis ATCC
           33277]
          Length = 401

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 144/308 (46%), Gaps = 14/308 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L  E   S+ T+  Y  D  ++  F + +T E   +    +      RA++  
Sbjct: 8   IERFLYYLRYEVHASERTVCDYAQDLNRYAAFFSEHTGE---VFEPSERDKDVARAWLFS 64

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    S++R LS +KSF KY+ K  +  +S +  +R  KK   LP  +   +   +
Sbjct: 65  LMEAGQKSSSVQRRLSALKSFYKYMVKIGLIGQSPVRMLRGPKKERPLPVFVPNDEMEKV 124

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++  +     E  +   R+  IL  LY  GLR SE  +L    + D    +RI GK +K 
Sbjct: 125 LNKPI----REDDFEAVRDRLILETLYEVGLRRSEIATLKDNAVEDKAGCIRIIGKRNKE 180

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RIVP    ++  I  Y ++   +  +      F  + G+PL   V  + +R     +   
Sbjct: 181 RIVPFGKRLQDMIDNYRNIR--EEKVGKSDFFFVSLDGRPLTGEVVYKIVRTALANVPHL 238

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRHSFAT +L++G DL S++ +LGH  LSTT  YT+++ +     + ++Y+  
Sbjct: 239 TKRSPHVLRHSFATEMLNHGADLMSVKELLGHDSLSTTVQYTHISFEQ----LRQMYN-A 293

Query: 318 HPSITQKD 325
           HP   +++
Sbjct: 294 HPRAKKEE 301


>gi|15676649|ref|NP_273793.1| integrase/recombinase XerD [Neisseria meningitidis MC58]
 gi|34223072|sp|Q9K068|XERD_NEIMB RecName: Full=Tyrosine recombinase xerD
 gi|7225980|gb|AAF41164.1| integrase/recombinase XerD [Neisseria meningitidis MC58]
 gi|325133733|gb|EGC56389.1| tyrosine recombinase XerD [Neisseria meningitidis M13399]
 gi|325140092|gb|EGC62621.1| tyrosine recombinase XerD [Neisseria meningitidis CU385]
          Length = 291

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 79/300 (26%), Positives = 132/300 (44%), Gaps = 20/300 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L ++R LS+ TL  Y  D  +    L+               +   +          
Sbjct: 10  LETLWLDRRLSQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYV---------D 60

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                S  R+LS  K    ++++  I T++    ++  K   ++P  + E+Q   L    
Sbjct: 61  GEQRSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRL---- 116

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
            L           R+ A+L L+Y  GLR+SEA+ L   N+  D+  +   GKGDK R+VP
Sbjct: 117 -LAAPDTDTPHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVP 175

Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +       +  YY    P  L       LF   +   ++  +    +++     G+    
Sbjct: 176 MGQESAYWVERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYASQAGIG-HI 234

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H+LRH+FATHL+ +G DLR +Q +LGH  L+TTQIYT+V +     W+  +  + H  
Sbjct: 235 SPHSLRHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVAN----VWLQGVVKEHHSR 290


>gi|148379752|ref|YP_001254293.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 3502]
 gi|153934110|ref|YP_001384049.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A
           str. ATCC 19397]
 gi|153936224|ref|YP_001387591.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A
           str. Hall]
 gi|168180365|ref|ZP_02615029.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum NCTC 2916]
 gi|226949034|ref|YP_002804125.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
 gi|148289236|emb|CAL83332.1| tyrosine recombinase [Clostridium botulinum A str. ATCC 3502]
 gi|152930154|gb|ABS35654.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932138|gb|ABS37637.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. Hall]
 gi|182668709|gb|EDT80687.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum NCTC 2916]
 gi|226843631|gb|ACO86297.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
          Length = 326

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 83/327 (25%), Positives = 150/327 (45%), Gaps = 27/327 (8%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE------- 55
             N+ ++      +   ++L  L   +G S+ T++SY+ D   F  FL  Y         
Sbjct: 2   KYNIQQLYDANFPQRLNDFLNYLRTIKGKSENTIESYKLDLIMFFRFLKLYKGMVPGETE 61

Query: 56  ------EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL-KRSLSGIKSFLKYLKKR-KI 107
                 + I+ + I+ +S T++ AF+S     +        R ++ +KSF ++L+ + KI
Sbjct: 62  FNDIEIKDISDEDIKNISLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKI 121

Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
             E+  L + + K S   P  L   ++  L+ ++              +  I+ +   CG
Sbjct: 122 IKENPALELESPKISKRNPVYLTLDESKRLLSSIDGKFKER-------DLCIVTMFLNCG 174

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQ 226
           LR+SE   +   NI +D   L + GKG+K R V L  +  K + +Y ++       +  +
Sbjct: 175 LRLSELCGINISNIKND--ILTVVGKGNKERTVYLNKACIKTLNDYLNVRKEMGEKIVDK 232

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLRSIQ 284
             LF       +N    +  +++  +  GL     + H LRH+ AT +  +G  D+RS+Q
Sbjct: 233 DALFLSKNYTRINKRSVEMLVKKYVKKAGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQ 292

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMM 311
            ILGH  +STTQIYT+V+S    + + 
Sbjct: 293 MILGHENISTTQIYTHVDSDRLREAVK 319


>gi|298368470|ref|ZP_06979788.1| tyrosine recombinase XerD [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282473|gb|EFI23960.1| tyrosine recombinase XerD [Neisseria sp. oral taxon 014 str. F0314]
          Length = 292

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 79/300 (26%), Positives = 135/300 (45%), Gaps = 20/300 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L++L +   LS+ TLQSY  D  +    L    ++          +      ++ + +  
Sbjct: 11  LEHLWLNHRLSQNTLQSYRRDLEKVAARLRQGGKDWFGAAAEDLAAAI----YVPEEK-- 64

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                S  R+LS  K    +L++ +   ++    + +  K   LP  + E Q   L    
Sbjct: 65  ---ASSQARALSACKRLYAWLEETEKRADNPTRFLTSPHKEQPLPGLITEAQIEKL---- 117

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
            L           R+  +L ++Y  GLR++EA+ L   ++  ++  +   GKGDK R VP
Sbjct: 118 -LAAPDVDTPHGLRDKTLLEVMYATGLRVTEAVKLKMSDLDLNKGWINTIGKGDKQRYVP 176

Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           L       I  Y     P  L   I   LF   +   ++  +    +++     G+  S 
Sbjct: 177 LGEEAVYWIERYCAESRPLLLKNKICDELFVSQKKSGISRQLAWMIVKEYADAAGI-RSL 235

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H LRH+FATHL+++G DLR +Q +LGH  +STTQIYT+V ++     + E+  + HP 
Sbjct: 236 SPHGLRHAFATHLVNHGADLRVVQMLLGHADISTTQIYTHVANQR----LKELVGKHHPR 291


>gi|258653281|ref|YP_003202437.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258556506|gb|ACV79448.1| integrase family protein [Nakamurella multipartita DSM 44233]
          Length = 336

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 84/330 (25%), Positives = 148/330 (44%), Gaps = 24/330 (7%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +   L+++ + +   L  ER  S  T+ +Y  D    L  L   T ++     +  L+  
Sbjct: 13  LPAPLVRDLERYRTFLSAERNRSPATVTAYLADLVSLLDHLGRMTGDR--PAELTDLTLP 70

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R++++++RT      +L R  +  +SF  +  +     +     +   +   +LP  L
Sbjct: 71  VLRSWLARQRTTGAARATLARRAAAARSFCAWAHRTGRLPQDVGARLAAPRADKTLPAVL 130

Query: 130 NEKQALTLVDNVLLHTSHETK-----------------WIDARNSAILYLLYGCGLRISE 172
              QA  ++D   +    ++                   +  R+ AIL LLY  G+R+SE
Sbjct: 131 RADQAHQMLDAPAVSAPDQSPDTGTGTGTGTGTSAVEQAMARRDQAILELLYASGIRVSE 190

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFR 231
              L    I   +  +R+ GKG+K R VP      +A+ ++ D     L  +     +F 
Sbjct: 191 LTGLNLDAIDRHRRVIRVLGKGNKQRTVPFGLPADRALGDWLDRGRPVLADDESGAAVFL 250

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           G RG+ ++P   +  + +    +        H LRH+ ATHLL  G DLR++Q +LGH  
Sbjct: 251 GRRGRRIDPRAVRTLVHRRTAAVDGAPEIAPHGLRHTAATHLLEGGADLRTVQELLGHAS 310

Query: 292 LSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           L+TTQIYT+V+++     +  IY Q HP  
Sbjct: 311 LATTQIYTHVSTER----LAAIYRQAHPRA 336


>gi|90422292|ref|YP_530662.1| phage integrase [Rhodopseudomonas palustris BisB18]
 gi|90104306|gb|ABD86343.1| phage integrase [Rhodopseudomonas palustris BisB18]
          Length = 304

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 75/303 (24%), Positives = 138/303 (45%), Gaps = 10/303 (3%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL +   ++L    +ER LS  TLQ+Y  D   F  +L    E          ++   +R
Sbjct: 2   ELRRLTASFLDTCAVERQLSANTLQAYGYDLADFCAWLKGQGEAP-------AVTTEHLR 54

Query: 73  AFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
            ++      +K+   +++R ++ +++F ++L  R    +        L +   LPRAL+ 
Sbjct: 55  DYLESMMVARKLSPSTVRRRIACLRAFFRFLDDRGEMPDPFTGWRLKLPRRKRLPRALSR 114

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAI-LYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           ++A  L+ +     +       +    + + L+   G+R+ E   +   ++  D ++LRI
Sbjct: 115 EEANQLLTSARAPGAARQSLPASTPLCVEIRLMISTGIRVGELCKIATGDVSSDGASLRI 174

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG + R+V +     +  L         L+     PLF    G+ L P  F+  +R  
Sbjct: 175 HGKGSRDRVVYVSNPALRNELRKLTTLRQRLSAG-DGPLFVNRNGENLRPYSFRTKLRNF 233

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               GL    T H LRH+ AT L+ +G D+R +Q +LGH  ++TT+IYT+V+ +     +
Sbjct: 234 AGQAGLRRRVTPHMLRHTAATLLIESGVDIRIVQRLLGHSSIATTEIYTHVSDEALRKSL 293

Query: 311 MEI 313
              
Sbjct: 294 ERA 296


>gi|296139371|ref|YP_003646614.1| integrase family protein [Tsukamurella paurometabola DSM 20162]
 gi|296027505|gb|ADG78275.1| integrase family protein [Tsukamurella paurometabola DSM 20162]
          Length = 298

 Score =  218 bits (555), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 82/303 (27%), Positives = 135/303 (44%), Gaps = 12/303 (3%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            + + L +ERG S+ T+++Y  D      F A           + +L    +RA++ +R 
Sbjct: 7   EYERYLRLERGRSEHTVRAYLADLTALFEFAAERG------VAVDRLDLATLRAWLGERA 60

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  +L R  S  +++  +  +R          ++  +   +LP  L+   A   + 
Sbjct: 61  ASGAARTTLARQASSARNYTAWAARRGHLDGDPGARLKAPRPRRTLPGVLSADDAAAALT 120

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           N     + E   I  R+ AI  LLY  G+R+SE   L   ++  D+  +R+ GKG+K R 
Sbjct: 121 NAASGAA-EGDPIAVRDQAITELLYATGIRVSELCGLDVGSVDRDRRVVRVIGKGNKERT 179

Query: 200 VPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP      + +  + D     L        LF G RG  L+P   +  + Q+   +    
Sbjct: 180 VPYGAPAAEVLGRWVDEARPQLVAEKSGAALFLGARGGRLDPRQARTVVHQVTGSVPGGR 239

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRH+ ATHLL  G DLR +Q +LGH  L+TTQ+YT+V+       +   ++Q H
Sbjct: 240 EVAPHGLRHTAATHLLDGGADLRVVQELLGHSSLATTQLYTHVSVAR----LRAAHEQAH 295

Query: 319 PSI 321
           P  
Sbjct: 296 PRA 298


>gi|54288326|gb|AAV31614.1| predicted site-specific recombinase [uncultured alpha
           proteobacterium EBAC2C11]
          Length = 315

 Score =  218 bits (555), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 82/311 (26%), Positives = 146/311 (46%), Gaps = 14/311 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +LQ +   +  S  TL +Y  D     I L          +T+      ++R  I  
Sbjct: 18  IDGFLQAISAMKAASVNTLSAYRRDLLDCQIGLETR------AKTLTNCDMDDLRGVIFW 71

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + +  RS+ R LS ++ F+ +  +  +  ++    + N     S P++L+E + + L
Sbjct: 72  WHQRDLKPRSVARRLSALRQFMGWAVEDGVRQDNPTTWLDNPSLPMSAPKSLSEVEIIQL 131

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +       + E +    R  A+L +LY  GLR+SE +SL       +  T+ ++GKG + 
Sbjct: 132 LKM---AKTLEPESASLRALAMLEILYATGLRVSELVSLLVVQFRRNPQTILVKGKGGRE 188

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VPL  + R A + + +    +        +F    G P++     R +++L     + 
Sbjct: 189 RLVPLGETARLAAVRWIECRDSNPAFVQSDYMFPVRGGGPMSRHQLARLLKKLAVAADIE 248

Query: 258 L-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +   + H LRHSFATH+L+ G DLRS+QS+LGH  +STTQIYT     +  + +  +   
Sbjct: 249 VGRVSPHKLRHSFATHMLNRGADLRSLQSLLGHADISTTQIYT----SSRPERLAGLVTS 304

Query: 317 THPSITQKDKK 327
            HP  +Q+  +
Sbjct: 305 AHPLASQRQDR 315


>gi|170754911|ref|YP_001781341.1| site-specific tyrosine recombinase XerC [Clostridium botulinum B1
           str. Okra]
 gi|169120123|gb|ACA43959.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum B1 str. Okra]
          Length = 326

 Score =  218 bits (555), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 83/327 (25%), Positives = 149/327 (45%), Gaps = 27/327 (8%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE------- 55
             N+ ++      +   ++L  L   +G S+ T++SY+ D   F  FL  Y         
Sbjct: 2   KYNIQQLYDANFPQRLNDFLNYLRTIKGKSENTIESYKLDLIMFFRFLKLYKGMVPGEAE 61

Query: 56  ------EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL-KRSLSGIKSFLKYLKKR-KI 107
                 + I+ + I+ +S T++ AF+S     +        R ++ +KSF ++L+ + KI
Sbjct: 62  FNDIEIKDISDEDIKNISLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKI 121

Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
             E+  L + + K S   P  L   ++  L+ ++              +  I+ +   CG
Sbjct: 122 IKENPALELESPKISKRNPVYLTLDESKRLLSSIDGKFKER-------DLCIVTMFLNCG 174

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQ 226
           LR+SE   +   NI +D   L + GKG+K R V L  +  K + +Y  +       +  +
Sbjct: 175 LRLSELCGINISNIKND--ILTVVGKGNKERTVYLNKACIKTLNDYLSVRKEMGEKIVDK 232

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLRSIQ 284
             LF       +N    +  +++  +  GL     + H LRH+ AT +  +G  D+RS+Q
Sbjct: 233 DALFLSKNYTRINKRSVEMLVKKYVKKAGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQ 292

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMM 311
            ILGH  +STTQIYT+V+S    + + 
Sbjct: 293 MILGHENISTTQIYTHVDSDRLREAVK 319


>gi|153940640|ref|YP_001391047.1| site-specific tyrosine recombinase XerC [Clostridium botulinum F
           str. Langeland]
 gi|152936536|gb|ABS42034.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum F str. Langeland]
 gi|322806030|emb|CBZ03597.1| putative integrase/recombinase [Clostridium botulinum H04402 065]
          Length = 326

 Score =  218 bits (555), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 83/327 (25%), Positives = 149/327 (45%), Gaps = 27/327 (8%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE------- 55
             N+ ++      +   ++L  L   +G S+ T++SY+ D   F  FL  Y         
Sbjct: 2   KYNIQQLYDANFPQRLNDFLNYLRTIKGKSENTIESYKLDLIMFFRFLKLYKGMVPGETE 61

Query: 56  ------EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL-KRSLSGIKSFLKYLKKR-KI 107
                 + I+ + I+ +S T++ AF+S     +        R ++ +KSF ++L+ + KI
Sbjct: 62  FNDIEIKDISDEDIKNISLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKI 121

Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
             E+  L + + K S   P  L   ++  L+ ++              +  I+ +   CG
Sbjct: 122 IKENPALELESPKISKRNPVYLTLDESKRLLSSIDGKFKER-------DLCIVTMFLNCG 174

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQ 226
           LR+SE   +   NI +D   L + GKG+K R V L  +  K + +Y  +       +  +
Sbjct: 175 LRLSELCGINISNIKND--ILTVVGKGNKERTVYLNKACIKTLNDYLSVRKEMGEKIVDK 232

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLRSIQ 284
             LF       +N    +  +++  +  GL     + H LRH+ AT +  +G  D+RS+Q
Sbjct: 233 DALFLSKNYTRINKRSVEMLVKKYVKKAGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQ 292

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMM 311
            ILGH  +STTQIYT+V+S    + + 
Sbjct: 293 MILGHENISTTQIYTHVDSDRLREAVK 319


>gi|313204183|ref|YP_004042840.1| integrase family protein [Paludibacter propionicigenes WB4]
 gi|312443499|gb|ADQ79855.1| integrase family protein [Paludibacter propionicigenes WB4]
          Length = 293

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 83/303 (27%), Positives = 143/303 (47%), Gaps = 13/303 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +LQ L+ E+  S  T+ SY  D  QF  FL    +E         ++  +I+ +I    
Sbjct: 4   EFLQYLQYEKNYSSHTVLSYNTDLIQFCNFLNVTPDEF----DPNSVNSQQIQQWILSLM 59

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           +  +  R+L R +S +KSF  +L  R+++  +  L +   K    +P    E +    +D
Sbjct: 60  SVDLSARTLSRKISTLKSFWHFLLSRRLSKHNPTLKIILPKTKKPIPAFFKENEMTAALD 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           N +        +   RN  IL   Y  G+R+SE L++  ++I     T+R+ GK +K RI
Sbjct: 120 NSM----KPDSFEYTRNRLILETFYLTGIRLSELLNIQDKDIDHSAGTIRVIGKRNKERI 175

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +P+  S+   I  Y  L    +++  +  LF    GK + P +    + +    +     
Sbjct: 176 IPIDKSLINDIERYITLRNESIDI-FEPNLFVRNNGKKMYPKMLYNIVHENMSEVSSLHK 234

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + H LRH+FAT LL+ G D+ +++ +LGH  LS TQ+YT+ + +     +  IY   HP
Sbjct: 235 RSPHVLRHTFATSLLNGGADINAVKELLGHSSLSATQVYTHTSFEE----LYNIYKHAHP 290

Query: 320 SIT 322
              
Sbjct: 291 RAK 293


>gi|160880725|ref|YP_001559693.1| integrase family protein [Clostridium phytofermentans ISDg]
 gi|160429391|gb|ABX42954.1| integrase family protein [Clostridium phytofermentans ISDg]
          Length = 291

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 73/308 (23%), Positives = 143/308 (46%), Gaps = 17/308 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + KE +++L   +  +  +  TL +Y  D +++ +FL     ++ ++   ++++ T I +
Sbjct: 1   MEKEIEDFLIYQKNIKNATDNTLSAYRIDLKRWYLFL-----QENSVSESKKITETMINS 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+ ++  +     ++ R+L  I+SFL YL K           ++  K   + PR L ++Q
Sbjct: 56  FLLQQEKEGKSKATVNRNLVSIRSFLFYLMKHGKLIGDPTERIKPPKVEIAPPRYLTKEQ 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
            L+L+                R+ A+L L+Y  G+++SE   L  ++I      + ++  
Sbjct: 116 VLSLL-----SAPDSNTKRGLRDKAMLELMYATGMKVSEIGGLKKEDINLKFGCVTVREL 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
               R+VP   + R ++  Y      D        LF G +G+P+      + ++   + 
Sbjct: 171 KKN-RVVPFGQAARASLEAYL--ASEDDVRKESPYLFLGRQGEPMTRQGVWKIMKYYGKQ 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +GL    T   +R+SFA H++ NG DL S++ ++GH  ++ TQ YT    K         
Sbjct: 228 IGLEEDLTPQAIRNSFAIHMIENGADLNSMKELMGHANITATQHYT----KQRIGETFGT 283

Query: 314 YDQTHPSI 321
           Y +THP  
Sbjct: 284 YHKTHPRA 291


>gi|237795202|ref|YP_002862754.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
 gi|229261716|gb|ACQ52749.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
          Length = 326

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 83/327 (25%), Positives = 149/327 (45%), Gaps = 27/327 (8%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE------- 55
             N+ ++      +   ++L  L   +G S+ T++SY+ D   F  FL  Y         
Sbjct: 2   KYNIQQLYDANFPQRLNDFLNYLRTIKGKSENTIESYKLDLIMFFRFLKLYKGMVPGETE 61

Query: 56  ------EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL-KRSLSGIKSFLKYLKKR-KI 107
                 + I+ + I+ +S T++ AF+S     +        R ++ +KSF ++L+ + KI
Sbjct: 62  FNDIEIKDISDEDIKNISLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKI 121

Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
             E+  L + + K S   P  L   ++  L+ ++              +  I+ +   CG
Sbjct: 122 IKENPALELESPKISKRNPVYLTLDESKRLLSSIDGKFKER-------DLCIVTMFLNCG 174

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQ 226
           LR+SE   +   NI +D   L + GKG+K R V L  +  K + +Y  +       +  +
Sbjct: 175 LRLSELCGINISNIKND--ILTVVGKGNKERTVYLNKACIKTLNDYLSVRKEIGEKIVDK 232

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLRSIQ 284
             LF       +N    +  +++  +  GL     + H LRH+ AT +  +G  D+RS+Q
Sbjct: 233 DALFLSKNYTRINKRSVEMLVKKYVKKAGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQ 292

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMM 311
            ILGH  +STTQIYT+V+S    + + 
Sbjct: 293 MILGHENISTTQIYTHVDSDRLREAVK 319


>gi|322806106|emb|CBZ03673.1| tyrosine recombinase XerD [Clostridium botulinum H04402 065]
          Length = 263

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 73/278 (26%), Positives = 141/278 (50%), Gaps = 16/278 (5%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
            +F  F+    E  +++ T+       I AF+   + +     S+ R++  +++F KYL 
Sbjct: 2   EKFSEFVRNRGERILSVDTVT------IMAFVQYLQREGRATSSIVRNIVSVRNFYKYLI 55

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           K+ + +E   L     K   ++P+ L+ ++   L++      S  +     R+ A+L L+
Sbjct: 56  KKNMVSEDPTLGYEIPKIERTIPKILSVEEVDKLLN------SPNSSKKGLRDKAMLELM 109

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
           Y  G++I+E L+L   +I    + ++ +G   + RI+P+     K +  Y ++ P  +N+
Sbjct: 110 YATGVKITELLNLNIYDINLKFNYIKCRGSKKRERIIPIGSYAIKCLKNYLEVRP-AINV 168

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                LF  ++G  +    F + I+   +   +     ++TLRHSFA HLL NG D++S+
Sbjct: 169 YNLDYLFLNLKGTQMTRQGFWKIIKFYAKEASIDKEIDSYTLRHSFAVHLLQNGADIKSV 228

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           Q +LGH  L+ TQIY++++ K+    + E+Y   HP  
Sbjct: 229 QELLGHKDLAATQIYSSISKKS---KIAEVYKNAHPRA 263


>gi|325473780|gb|EGC76968.1| tyrosine recombinase xerC [Treponema denticola F0402]
          Length = 305

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 80/315 (25%), Positives = 138/315 (43%), Gaps = 25/315 (7%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  +++L      R  +K T+ SY+ D   F  +L            + +L  ++IR FI
Sbjct: 3   EVFESYLTYSAGVRQFTKATIDSYKNDLIIFEEWLKELD------LNVFELKASDIRIFI 56

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++   +KI   S+ R +S ++ F KY  +  +T  + I ++RNLK +  LP  +  KQA 
Sbjct: 57  AELADKKIAPASINRMMSTLRGFYKYALRFNLTKINPISSVRNLKLAQKLPVFMFPKQAQ 116

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
                     S+     + R++A+   LY  G R+SE   L  +++    S   + GKG 
Sbjct: 117 EFCRL----PSNAGILWETRDAALFASLYSTGCRVSELAGLDIKDLDKTLSYAIVFGKGK 172

Query: 196 KIRIVPLLPSVRKAILEYYDLC-----------PFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           K R V      ++ +  Y                 D    I+  LF   + + L     +
Sbjct: 173 KERKVFFAEFAKEYLKIYLQERTDLVEKFKGQVQKDGKGKIRDALFINQKAQALTSRGIR 232

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             I +           + H  RHSFA+ L++ G D+R +Q +LGH  +STTQ YT++ ++
Sbjct: 233 YIINRYVELSPELKHLSPHAFRHSFASTLITRGADIRVVQELLGHESVSTTQRYTHITAE 292

Query: 305 NGGDWMMEIYDQTHP 319
                +  +Y   HP
Sbjct: 293 Q----LQNLYKTAHP 303


>gi|255037676|ref|YP_003088297.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254950432|gb|ACT95132.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 290

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 82/301 (27%), Positives = 146/301 (48%), Gaps = 15/301 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L+ E+  S  T++SY+ D  QF  +L F  E               +R+++     
Sbjct: 5   FLEFLQFEKRASAHTIKSYQTDLEQFQKYLLFQYE----CNEPETAKAPMLRSWVVSMME 60

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   S+ R ++ +++F  YL+K+K         +  LK    LP  + EK    L + 
Sbjct: 61  EGLNPSSINRKIAALRTFYGYLRKKKHIDSDPTKILSALKTRKKLPAFVEEKSMELLFEE 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +        +   R+  I+ LLYG G+R+SE + L  +++     T+R+ GK  K RIV
Sbjct: 121 GVFS----EDFSGLRDRVIMELLYGSGIRLSELVELELKDLNLPARTIRVFGKRAKERIV 176

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+  S+ + + +Y +    + + ++   L      K + P   QR ++Q    +      
Sbjct: 177 PVSTSLAQLLHKYTEQRAPEEDTDV---LLLTDSNKAIYPVFVQRKVKQYLSAVTTLSQK 233

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H LRH++ATHLL+ G DL +I+ +LGH  L+ TQIYT+    N  + + + + Q HP 
Sbjct: 234 SPHVLRHTYATHLLNRGADLNAIKELLGHANLAATQIYTH----NSIEKLKKTHQQAHPK 289

Query: 321 I 321
            
Sbjct: 290 A 290


>gi|170761083|ref|YP_001787113.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A3
           str. Loch Maree]
 gi|169408072|gb|ACA56483.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 326

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 83/327 (25%), Positives = 148/327 (45%), Gaps = 27/327 (8%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE------- 55
             N+ ++      +   ++L  L   +G S+ T++SY+ D   F  FL  Y         
Sbjct: 2   KYNIQQLYDANFPQRLNDFLNYLRTIKGKSENTIESYKLDLIMFFRFLKLYKGMVPGETE 61

Query: 56  ------EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL-KRSLSGIKSFLKYLKKR-KI 107
                 + I+ + I+ +S T++ AF+S     +        R ++ +KSF ++L+ + KI
Sbjct: 62  FNDIEIKDISDEDIKNISLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKI 121

Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
             E+  L + + K S   P  L   ++  L+ ++              +  I+ +   CG
Sbjct: 122 IKENPALELESPKISKRNPVYLTLDESKRLLSSIDGKFKER-------DLCIVTMFLNCG 174

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQ 226
           LR+SE   +   NI +D   L + GKG+K R V L  +  K + +Y          +  +
Sbjct: 175 LRLSELCGINISNIKND--ILTVVGKGNKERTVYLNKACIKTLNDYLSARKEMGEKIVDK 232

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLRSIQ 284
             LF       +N    +  +++  +  GL     + H LRH+ AT +  +G  D+RS+Q
Sbjct: 233 DALFLSKNYTRINKRSVEMLVKKYVKKAGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQ 292

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMM 311
            ILGH  +STTQIYT+V+S    + + 
Sbjct: 293 MILGHENISTTQIYTHVDSDRLREAVK 319


>gi|146337735|ref|YP_001202783.1| site-specific tyrosine recombinase [Bradyrhizobium sp. ORS278]
 gi|146190541|emb|CAL74543.1| site-specific tyrosine recombinase [Bradyrhizobium sp. ORS278]
          Length = 308

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 80/314 (25%), Positives = 138/314 (43%), Gaps = 22/314 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  +  E+G  + TL +Y  D      FL                    +R +++    
Sbjct: 4   FLDMMAAEQGAGQNTLDAYRRDLIDLSEFLTRKG------NGFAAADTQALRDYLANLDL 57

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD- 139
           +     S+ R LS ++   ++L   +I ++     +   K+  +LP+ L+      ++  
Sbjct: 58  RGFKSSSVARRLSAMRHLFRFLLSERIRSDDPAAILSGPKRGRALPKVLSIGDVDRMLTK 117

Query: 140 ----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
               + +   S   +    R   +L +LY  GLR+SE ++L      +D   + ++GKG+
Sbjct: 118 AKELSEVADASLSQRLRALRLYCLLEVLYATGLRVSELVALPRTAARNDARMIVVRGKGN 177

Query: 196 KIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQ 249
           K R+VPL  + R+A+ +Y             +      LF        L    F R +++
Sbjct: 178 KERLVPLNQASRQAMADYLAMLDRQKPHAKASATFGKWLFPSFGESGHLTRQHFARDLKE 237

Query: 250 LRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           L    GLP    + H LRH+FA+HLL NG DLR +Q++LGH  +STTQIYT+V  +    
Sbjct: 238 LAAASGLPARLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER--- 294

Query: 309 WMMEIYDQTHPSIT 322
            +  +    HP   
Sbjct: 295 -LKSLVRDLHPLAE 307


>gi|326387918|ref|ZP_08209524.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207964|gb|EGD58775.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 298

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 117/316 (37%), Positives = 171/316 (54%), Gaps = 20/316 (6%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LPEI+S         W  +L   R  S  T+++Y    R+ +  L    +  +    +  
Sbjct: 3   LPEILSA--------WHDHLAHGRRRSPHTVRAYVATARRLITRLE--QDGALHWARLGA 52

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           L  T +R +++ RR   IG+ S  R LS +K+F+ + + +          +R  +    L
Sbjct: 53  LDATALRHYLADRREHGIGNVSAARELSALKAFIAFARTQADMPPG-APRLRGPRVKKGL 111

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           PR +    A+ L + V    +    WI AR++A+L LLYG GLRI EAL+L P  I+   
Sbjct: 112 PRPITPDDAVNLAETVAEDATEP--WIAARDTAVLLLLYGSGLRIGEALAL-PAGILPAG 168

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            ++ I GKG + R+V LLP VR A+  Y  L P+ L  +   PLFRG +G PL+ G+ +R
Sbjct: 169 ESMVITGKGGRQRLVALLPVVRAALERYAALVPWPLGKD--DPLFRGAKGGPLSAGMIRR 226

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            + + R  LGLP S T H LRHSFATHLL  G DLRS+Q +LGH  LS+TQIYT V++  
Sbjct: 227 AMARARVALGLPPSATPHALRHSFATHLLGAGADLRSLQELLGHASLSSTQIYTKVDAAR 286

Query: 306 GGDWMMEIYDQTHPSI 321
               ++++Y   HP  
Sbjct: 287 ----LLDVYRSAHPRA 298


>gi|284799628|ref|ZP_05984435.2| tyrosine recombinase XerD [Neisseria subflava NJ9703]
 gi|284797559|gb|EFC52906.1| tyrosine recombinase XerD [Neisseria subflava NJ9703]
          Length = 292

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 81/300 (27%), Positives = 141/300 (47%), Gaps = 20/300 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L++L ++  LS  TLQSY  D  +    L    ++ ++                     +
Sbjct: 11  LESLWLQDRLSYNTLQSYRRDLVKVAARLTEGGQDWLSADEFALSDAV---------YAE 61

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
              + S  R+LS  K    +L++     ++    ++  K    LP  + E Q   L+   
Sbjct: 62  GEKNTSQARALSACKRMYGWLEETGQRADNPTRFLKAPKSERKLPTLITEAQIDALLAEP 121

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
            + T H       R+ A+L ++Y  GLR++EA+ LT  +I   + ++R  GKGDK+R+VP
Sbjct: 122 DVETLH-----GLRDKALLEVMYATGLRVTEAVKLTLSDIDLHRGSIRTIGKGDKLRLVP 176

Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           L       +  Y +   P  L   I   +F   +   ++  +    +++     G+  S 
Sbjct: 177 LGQEAAYWVERYCNESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKEYAEAAGIA-SL 235

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H LRH+FATHL+++G DLRS+Q +LGH  ++TTQIYT+V +      +  + D+ H  
Sbjct: 236 SPHGLRHAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHVAN----IRLKNMVDEHHSR 291


>gi|254804633|ref|YP_003082854.1| putative site-specific recombinase/integrase [Neisseria
           meningitidis alpha14]
 gi|254668175|emb|CBA04865.1| putative site-specific recombinase/integrase [Neisseria
           meningitidis alpha14]
          Length = 291

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 78/300 (26%), Positives = 133/300 (44%), Gaps = 20/300 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L ++R LS+ TL  Y  D  +    L+               +   +          
Sbjct: 10  LETLWLDRRLSQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYV---------D 60

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                S  R+LS  K    ++++  I T++    ++  K   ++P  + E+Q   L+   
Sbjct: 61  GEQRSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLL--- 117

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
              T         R+ A+L L+Y  GLR+SEA+ L   ++  D+  +   GKGDK R+VP
Sbjct: 118 --ATPDTDTPHGLRDKALLELMYATGLRVSEAVGLNFGSVDLDRGCITALGKGDKQRMVP 175

Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +       +  YY    P  L       LF   +   ++  +    +++     G+    
Sbjct: 176 MGQESAYWVGRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIG-HI 234

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H+LRH+FATHL+ +G DLR +Q +LGH  L+TTQIYT+V +     W+  +  + H  
Sbjct: 235 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVAN----VWLQGVVKEHHSR 290


>gi|225619262|ref|YP_002720488.1| tyrosine recombinase XerD [Brachyspira hyodysenteriae WA1]
 gi|225214081|gb|ACN82815.1| tyrosine recombinase XerD [Brachyspira hyodysenteriae WA1]
          Length = 309

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 155/308 (50%), Gaps = 21/308 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL+E  ++LQ L      +  T+ SY  D +++  FL            + + ++  +R 
Sbjct: 17  LLEEFSDYLQTL----NFAAHTINSYNKDLKEYFQFLHNKNI------PLDEANHYTVRD 66

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++  + + + + ++ R LS IK F KYL +   + ++ I++M++ K+   + + L+   
Sbjct: 67  YLTFLKEKSLTNSTMSRHLSSIKKFYKYLIRNGYSDKNRIVDMKSPKREEHIAKFLSIDD 126

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                 + +L       +   R+  +   +Y  GLR+SE  SL    I     TLRI GK
Sbjct: 127 I-----DNILAIDDGGDFTLIRDKMMALFMYAIGLRVSELASLKLSMIKKGSETLRICGK 181

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLR 251
           G K+R +P+LP + +    Y +          +    +F    GKP++    +  +++L 
Sbjct: 182 GSKVRDIPILPIIYENWDVYMEKRRIIQREYSENNDYIFINRFGKPISDRSIRTSMKRLI 241

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R   + +  + HTLRH+FATHLL+N  ++R +Q +LGH  ++TTQ YT+V +      + 
Sbjct: 242 RNANISIDFSPHTLRHTFATHLLNNDAEIRGVQELLGHETIATTQRYTHVTNSR----LF 297

Query: 312 EIYDQTHP 319
           E+Y++ HP
Sbjct: 298 EVYNKFHP 305


>gi|323359719|ref|YP_004226115.1| integrase [Microbacterium testaceum StLB037]
 gi|323276090|dbj|BAJ76235.1| integrase [Microbacterium testaceum StLB037]
          Length = 301

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 131/307 (42%), Gaps = 17/307 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L +L   R LS  T+++Y  D                    + +L    +R +  + 
Sbjct: 8   EAFLTHLATVRRLSPATVRAYRSDLADLA--------RSTGDAPLDELDIEALRQWQWEA 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            +      +  R  S  ++FL + ++  +        +   K+  +LP          ++
Sbjct: 60  TSAGRAKATAARRTSAARAFLSWAREEGLIEVDPSPRLVAPKRGRTLPVVATTSALDEVL 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                H     + +  R+ AIL +LYG G R+SE   L   ++  +  TLR++GKGD+ R
Sbjct: 120 AGAAAHA-ESGEPVALRDHAILEVLYGSGARVSELCGLDLDDVDRESRTLRVRGKGDRER 178

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL----PLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +VP      +A+  Y       L+          +F G RG  L P      + ++   +
Sbjct: 179 VVPYGVPAARALEAYVVRGRPVLSARGDGVAGPAVFLGARGARLGPRAVHALVSRVVAPV 238

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
               +   H LRHS ATHLL  G DLRS+Q ILGH  L TTQIYT+V+ +     + E Y
Sbjct: 239 VGAETLGPHALRHSAATHLLDGGADLRSVQEILGHASLGTTQIYTHVSGER----LREAY 294

Query: 315 DQTHPSI 321
              HP  
Sbjct: 295 RLAHPRA 301


>gi|326335714|ref|ZP_08201900.1| site-specific tyrosine recombinase XerC [Capnocytophaga sp. oral
           taxon 338 str. F0234]
 gi|325692143|gb|EGD34096.1| site-specific tyrosine recombinase XerC [Capnocytophaga sp. oral
           taxon 338 str. F0234]
          Length = 296

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 87/308 (28%), Positives = 149/308 (48%), Gaps = 14/308 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +   L +E+  S  T+ +Y  D  +F  FL    EE  T++ + +++Y  IR++I  
Sbjct: 2   IDAFENYLRLEKKYSPHTVTAYLTDVEEFAAFLK---EEDPTVE-LSKVNYPLIRSWIIH 57

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
               KI +RS+ R ++ +K++  +L +      +       LK    L    +EK+    
Sbjct: 58  LVESKITNRSINRKIASLKAYYAFLVRSLAIKSTPFQQHIPLKTQKKLSIPFSEKE---- 113

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +++VL   + E  +   RN  I+ L Y  G+R SE + L   +I   Q T+++ GK +K 
Sbjct: 114 IEDVLSIPTEEDSYTSLRNRMIIELFYATGIRRSELIELKINDIDLSQKTIKVLGKRNKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RI+PL+ +V +++ +Y  +         +  LF    GK + P +    I      +   
Sbjct: 174 RIIPLIHTVVESLEKYLLIRKD--VETSEEFLFLTNNGKKMYPKLVYNIINSYFSSVTTK 231

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRHSFATHLL NG DL +++ +LGH  L+ TQ+YT+ +       +   Y   
Sbjct: 232 QKKSPHVLRHSFATHLLDNGADLNAVKELLGHAGLAATQVYTHSSIAE----LKNQYKNA 287

Query: 318 HPSITQKD 325
           HP  T K+
Sbjct: 288 HPRETNKE 295


>gi|325299603|ref|YP_004259520.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170]
 gi|324319156|gb|ADY37047.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170]
          Length = 292

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 75/303 (24%), Positives = 134/303 (44%), Gaps = 14/303 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L+ L+ E+  S+ T+ SY  D   F  +     E          +    IR ++   
Sbjct: 4   ESFLKYLQFEKNYSEKTVVSYGIDLSGFEAYFKAVDE----TLDFATVDADVIRGWVVSL 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S+ R LS ++SF +YL + K+ +   +  +   KK   LP  + E     L+
Sbjct: 60  MDEGYAASSVNRKLSSLRSFYRYLLREKVVSVDPVRKVTGPKKKKPLPVFVKEADMDRLL 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D         T +   RN AI+ + Y  G+R+SE + L   N+     T+++ GK +K R
Sbjct: 120 D-----AECGTDFESVRNKAIVAVFYETGIRLSELIGLKDANVDFSAGTIKVTGKRNKQR 174

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++P    +   +  Y        +   +   F    GK + PG+    +RQ    +    
Sbjct: 175 VIPFGEELENILQVYLSARNEYCHTECE-AFFVRKEGKAMYPGMVYLLVRQNLSRVVALK 233

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRHSFAT +L+N   L +++ +LGH  L+T    T + +    + + ++Y Q H
Sbjct: 234 KRSPHVLRHSFATAMLNNQAGLEAVKELLGHESLTT----TEIYTHTTFEELKKVYQQAH 289

Query: 319 PSI 321
           P  
Sbjct: 290 PRA 292


>gi|18978240|ref|NP_579597.1| integrase-recombinase protein [Pyrococcus furiosus DSM 3638]
 gi|73920477|sp|Q8TZV9|XERC_PYRFU RecName: Full=Probable tyrosine recombinase xerC-like
 gi|18894057|gb|AAL81992.1| integrase-recombinase protein [Pyrococcus furiosus DSM 3638]
          Length = 286

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 89/302 (29%), Positives = 143/302 (47%), Gaps = 38/302 (12%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + +   LE+E G SK T++ Y     +FL       EE  +       +  +   F+
Sbjct: 9   EVLEEFATYLELE-GKSKNTIRMYTYFLSKFL-------EEGYSP------TARDALRFL 54

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +K R +    RS+   +  +K++ K+     +  E     +RN K   +LP++L E++  
Sbjct: 55  AKLRAKGYSIRSINLVVQALKAYFKF---EGLNEE--AERLRNPKIPKTLPKSLTEEEVK 109

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KG 194
            L++ +             R+  I+ LLYG GLR+SE  +L  ++I  ++  L ++G KG
Sbjct: 110 KLIEVIPKDK--------IRDRLIVLLLYGTGLRVSELCNLKIEDINFEKGFLTVRGGKG 161

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK---PLNPGVFQRYIRQLR 251
            K R +P+   +   I  Y      D        LF   R K    L+P    R +++  
Sbjct: 162 GKDRTIPIPQPLLTEIKNYLRRRTDD-----SPYLFVESRRKNKEKLSPKTVWRILKEYG 216

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R  G+    T H LRHSFATH+L  G D+R IQ +LGH  LSTTQIYT V +K+  + + 
Sbjct: 217 RKAGI--KVTPHQLRHSFATHMLERGIDIRIIQELLGHASLSTTQIYTRVTAKHLKEAVE 274

Query: 312 EI 313
             
Sbjct: 275 RA 276


>gi|325280617|ref|YP_004253159.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712]
 gi|324312426|gb|ADY32979.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712]
          Length = 307

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 82/319 (25%), Positives = 148/319 (46%), Gaps = 27/319 (8%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E  ++L  L+  +  S LT+ +Y+ D  QF  F          I+   +++   +R F  
Sbjct: 2   EIDSFLSYLKNIKRYSALTITAYKEDLNQFREFCEKVEL----IRQDEEITSKMVRRFEM 57

Query: 77  KRRTQKIG--------------DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
              +  +                RS++R LS ++++ +YL +    TE     +   K  
Sbjct: 58  GLMSGGLKIGGVDGEEKLRPMTARSVRRKLSSLRTYFRYLVREGKLTEDPTEIVVAPKMG 117

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             LP  + + Q   ++D      + +  + + R+  +L   Y  G+R SE ++L  +++ 
Sbjct: 118 KRLPVFVPDYQMDEVLDKH----ASDKDFANIRDRMVLMTAYYTGMRRSELVALKLEDVD 173

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
            + + +R+ GKGDK RIVP+LP +   +  Y +     +    Q  +F   +GKP+    
Sbjct: 174 LEGAVIRVNGKGDKQRIVPMLPELAGDLRIYLNKREELVGEKHQF-VFVTDKGKPVYDKF 232

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             R   +    +      + H LRHSFAT LL+NG  + +I+ +LGH  L+ TQIYT+  
Sbjct: 233 IYRLAVKYLGEVTSLKKRSPHVLRHSFATALLNNGACIEAIRELLGHAGLAATQIYTH-- 290

Query: 303 SKNGGDWMMEIYDQTHPSI 321
             N  + + ++Y+Q HP  
Sbjct: 291 --NSFESLKKVYNQAHPRA 307


>gi|261416671|ref|YP_003250354.1| integrase family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373127|gb|ACX75872.1| integrase family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327068|gb|ADL26269.1| site-specific recombinase, phage integrase family [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 298

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 90/310 (29%), Positives = 149/310 (48%), Gaps = 16/310 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +  QN+L  L+ +R  S+ T+ +Y     ++L  +            +   S   ++A
Sbjct: 3   LDEYIQNFLIYLQTQRRYSERTVITYRKSLEKYLATINEN-------APLEAFSEMNVKA 55

Query: 74  FISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           F+   +  QK+   S+   L+ +KSF KYL + KI  ++    +   K+   L   L +K
Sbjct: 56  FVWDLKIKQKLAPTSICEHLAALKSFGKYLVRSKILQKNPAEAVPMPKRPKRLVSFLGQK 115

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L +               R   +L L+YG GLRISE  SL    +   +  +R+ G
Sbjct: 116 D---LAEEKFPELPENPTLPQVRARLLLELIYGSGLRISECQSLCWNQLQIKERLVRVIG 172

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG+K RIVP+  ++   + ++  +     +   I   +F    GKP +    +  I  L 
Sbjct: 173 KGNKERIVPITDTLISWLEKFRAVEIEAGHTPTITSYVFLSENGKPYDIRTLRNDIHNLL 232

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R +G     + H LRHSFATHLL NG ++ S++ +LGH  +STTQIYT+VN++     + 
Sbjct: 233 RDIGWEGKASPHVLRHSFATHLLENGAEIMSVKEMLGHSNISTTQIYTHVNAER----LK 288

Query: 312 EIYDQTHPSI 321
           + + +THP  
Sbjct: 289 QAFKKTHPRA 298


>gi|312139234|ref|YP_004006570.1| tyrosine recombinase xerc [Rhodococcus equi 103S]
 gi|311888573|emb|CBH47885.1| tyrosine recombinase XerC [Rhodococcus equi 103S]
          Length = 313

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 87/322 (27%), Positives = 143/322 (44%), Gaps = 10/322 (3%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+  +    +   L     ++ + L +ERG S+ T+++Y  D    L FL     + +  
Sbjct: 1   MDSRSPDSQLPPPLRMHLDDYDEYLRLERGRSEHTVRAYRADVAGLLGFLCRDRPDAV-- 58

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             +  L    +RA+++ +        +L R  S  K F  + ++         + +   K
Sbjct: 59  --LADLDLRVLRAWLAAQAAAGTARTTLARRTSSAKGFTAWAERTGRMPVDPGIRLVAPK 116

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
              +LP  L ++QA   +       + E   +  R+  I+ LLY  G+R+ E   L   +
Sbjct: 117 AHRTLPPVLRQEQAAEAMVAAESGAAQE-DPVAVRDRLIVELLYSTGIRVGELCGLDLGD 175

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLN 239
           I  D+  LR+ GKGDK R+VP       AI  +      +L N      L  G RG  L+
Sbjct: 176 IDHDRRVLRVLGKGDKERVVPFGRPAEDAIGAWLRSGRPELVNERSGDALLLGRRGGRLD 235

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               +  +  + + +        H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT
Sbjct: 236 QRQARAVVHDVVQAVPGAPDLAPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYT 295

Query: 300 NVNSKNGGDWMMEIYDQTHPSI 321
           +V+       +  ++DQ HP  
Sbjct: 296 HVSVAR----LRAVHDQAHPRA 313


>gi|312115313|ref|YP_004012909.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311220442|gb|ADP71810.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 334

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 88/327 (26%), Positives = 134/327 (40%), Gaps = 26/327 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  +  ERG S  T+ +Y  D R+   FLA   E      T    +  ++ AF S 
Sbjct: 17  IDAYLAMMRAERGASANTVAAYAADLREMSRFLAERGE------TFAACARADLEAFFSD 70

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R    +   S  R LS +K F+ +L   K+  +     +  +K    LP  L   +   L
Sbjct: 71  RAEAGLLANSAARKLSCLKRFMLFLVAEKMRDDDPARLIDGVKARRVLPMTLTIAEVDLL 130

Query: 138 VDNVLLHTSHETKWIDARNSAILYLL-----YGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +D      +       +   A+         Y  GLR+SE + L     + D+  L ++G
Sbjct: 131 LDAAHQAAAFGDPQTSSGRRALRLACLLELLYATGLRVSELVGLPRAAFLGDRKMLTVKG 190

Query: 193 KGDKIRIVPLLPSVRKAILEYYD---------LCPFDLNLNIQLPLFRGIRGK-PLNPGV 242
           KG + RI+PL    R  +  + D                 +    LF        L    
Sbjct: 191 KGGRERIIPLNAKARTVLDCWLDALEAAARADGKAGGAGASASKWLFPSWGEDGHLTRQK 250

Query: 243 FQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           F + ++ L   LG+     + H LRH+FATHLL  G DLR +Q++LGH  +STTQIYT+V
Sbjct: 251 FAQDLKALGARLGIDAERLSPHVLRHAFATHLLDRGVDLRVLQTLLGHADISTTQIYTHV 310

Query: 302 NSKNGGDWMMEIYDQTHPSITQKDKKN 328
                 D + +     HP      +K 
Sbjct: 311 ----MEDRLRQTVFDFHPLSEGAAEKE 333


>gi|147918869|ref|YP_687405.1| integrase [uncultured methanogenic archaeon RC-I]
 gi|110622801|emb|CAJ38079.1| integrase [uncultured methanogenic archaeon RC-I]
          Length = 278

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 91/294 (30%), Positives = 144/294 (48%), Gaps = 36/294 (12%)

Query: 28  ERGLS--KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           E+ LS    T++ Y     +F  +     E  +  + +R L+Y      +SK        
Sbjct: 16  EKRLSSSPGTIRQYGMILNRFYKYTGKQPEMVVRPEIVRYLNYLMFEKHLSK-------- 67

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            ++   LS +KSF  ++      + +    + N+K     P  L   +   L+D      
Sbjct: 68  TTVANVLSVLKSFYSFMLDNGYVSSNPTRGINNIKLDKKAPVYLTVSEMNDLLD------ 121

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
                 ID R+  I+ LLY  G+R+SE +++  ++I  D+ T+++ GKG K RIV +  +
Sbjct: 122 ----TAIDTRDRIIVRLLYATGVRVSELVNIRKKDIDFDRCTIKVFGKGAKERIVLVPET 177

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           V K + +Y        +L+    LF       L P   QR I+QL R   +  + T H L
Sbjct: 178 VVKEMYDY------AASLSNDDRLFN------LTPRTVQRDIKQLARRAKINKNVTPHKL 225

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           RHSFATH+L NGG++ +IQ +LGH  L+TTQIYT+ N     D + E+Y +THP
Sbjct: 226 RHSFATHMLQNGGNVVAIQKLLGHSSLNTTQIYTHYN----VDELKEMYGRTHP 275


>gi|254669734|emb|CBA03915.1| site-specific recombinase [Neisseria meningitidis alpha153]
          Length = 291

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 133/300 (44%), Gaps = 20/300 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L ++R LS+ TL  Y  D  +    L+               +   +          
Sbjct: 10  LETLWLDRRLSQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYV---------D 60

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                S  R+LS  K    ++++  I T++    ++  K   ++P  + E+Q   L+   
Sbjct: 61  GEQRSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLL--- 117

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
              T         R+ A+L L+Y  GLR+SEA+ L   ++  D+  +   GKGDK R++P
Sbjct: 118 --ATPDTDTPHGLRDKALLELMYATGLRVSEAVGLNFGSVDLDRGCITALGKGDKQRMIP 175

Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +       +  YY    P  L       LF   +   ++  +    +++     G+    
Sbjct: 176 MGQESAYWVERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYASQAGIG-HI 234

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H+LRH+FATHL+ +G DLR +Q +LGH  L+TTQIYT+V +     W+  +  + H  
Sbjct: 235 SPHSLRHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVAN----VWLQGVVKEHHSR 290


>gi|205373364|ref|ZP_03226168.1| tyrosine recombinase xerC [Bacillus coahuilensis m4-4]
          Length = 250

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 82/257 (31%), Positives = 123/257 (47%), Gaps = 9/257 (3%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            + Y + R +++    +K    ++ R +S +KSF K+L K     E+    + + K+   
Sbjct: 3   DIEYLDARLYLTDLYDKKYARSTVSRKVSSLKSFYKFLTKEDKLDENPFSLVFHPKQEKR 62

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP    E++   L D             D RN A+L LLY  G+R+SE  +L+ ++I   
Sbjct: 63  LPNFFYEEEIERLFDAC-----KGDTHKDIRNLALLELLYATGIRVSECSNLSLKDIDFS 117

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
             T+ + GKG K R VP      +AI  Y D     L       LF  ++G PL     +
Sbjct: 118 FHTVLVTGKGRKERYVPFGTYASEAIKRYLDHTRHVLVKGEHQQLFVNLKGGPLTDRGIR 177

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +  +     L      H LRH+FATHLLSNG DLRS+Q +LGH  LS+TQ YT+V  +
Sbjct: 178 HILNDVISRASLTHKIHPHMLRHTFATHLLSNGADLRSVQELLGHSHLSSTQTYTHVTKE 237

Query: 305 NGGDWMMEIYDQTHPSI 321
           +    + + Y   HP  
Sbjct: 238 H----LRKTYLSHHPRA 250


>gi|238020532|ref|ZP_04600958.1| hypothetical protein GCWU000324_00418 [Kingella oralis ATCC 51147]
 gi|237867512|gb|EEP68518.1| hypothetical protein GCWU000324_00418 [Kingella oralis ATCC 51147]
          Length = 294

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 88/315 (27%), Positives = 140/315 (44%), Gaps = 22/315 (6%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
              L +   +L     +R  S  TL +YE + R+    L              Q +  + 
Sbjct: 2   HPFLAQLAPYLTEQR-QRNRSPHTLIAYERELRELANLLPAT----------AQPARRDF 50

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           +A   +   + +   SL R+LS  + +  YL ++     + + +++ LKK   LPRA+  
Sbjct: 51  QAAFRQLSQRGLHPASLARALSAWRQYCDYLVRQGSLKTNPVQDIKALKKPQRLPRAIER 110

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
                L+D      +     +  R+ AI  LLYG GLR++E   L   ++  D   L + 
Sbjct: 111 DTLNALLD----QPAESDDTLALRDQAIAELLYGSGLRLAELAGLNLADVYLDAGWLNVH 166

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG K R VPL  S    + ++    P   +   +  LF    G  L      + +    
Sbjct: 167 GKGSKQRQVPLTQSSVALLQQWLAQRPAQPH---ETALFTTQHGTRLGSRQIAKRLDNWA 223

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +  G P   + H LRHSFA HLL    D+R++Q +LGH  LS+TQIYT ++     D + 
Sbjct: 224 QQHGSPQHISPHMLRHSFAGHLLQASRDIRAVQDLLGHASLSSTQIYTKLDF----DHLA 279

Query: 312 EIYDQTHPSITQKDK 326
            +YD+THP   +  K
Sbjct: 280 AVYDETHPRARRGKK 294


>gi|257453686|ref|ZP_05618973.1| tyrosine recombinase XerC [Enhydrobacter aerosaccus SK60]
 gi|257448920|gb|EEV23876.1| tyrosine recombinase XerC [Enhydrobacter aerosaccus SK60]
          Length = 345

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 87/316 (27%), Positives = 149/316 (47%), Gaps = 13/316 (4%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +++ +       WL  L  +R  S  T++SY    + FL +      E      +  ++ 
Sbjct: 42  VLNTDDQALVNRWLAELSNKR-YSAATIKSYRQALQPFLAYCYEQHTE------LCHITR 94

Query: 69  TEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
            ++  F+ +R    KI   S +  L+ ++   K+L  +++ T +    +R  +    LP 
Sbjct: 95  QQLSDFLIRRLDVDKISKSSSQYELTVLRQLYKWLIVQQLMTLNPTTTIRLKRAPRPLPT 154

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L+      L+D      SHE + +  R+ A+L LLYG GLR+ E + L   +I   Q  
Sbjct: 155 LLDIDVLSQLLDQAAPEDSHEAR-LWIRDKAMLELLYGSGLRVGELVGLNMSDIDKSQRL 213

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           LR+ GKG K RIVP+     +A++ Y       +             G  ++    Q  I
Sbjct: 214 LRVLGKGGKTRIVPIGEKAWQALINYLPHRSLWVEEQDPAVFVSERYGTRISTRTVQLRI 273

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +   +  G+      H LRH FA+H+LS+ GDLR +Q +LGH  +STTQIYT+++  +  
Sbjct: 274 KLQAKRAGVAQDLYPHLLRHCFASHILSDSGDLRGVQELLGHSDISTTQIYTHLDFGH-- 331

Query: 308 DWMMEIYDQTHPSITQ 323
             + ++YD+ HP   +
Sbjct: 332 --LSQVYDKAHPRSRR 345


>gi|294789666|ref|ZP_06754899.1| tyrosine recombinase XerC [Simonsiella muelleri ATCC 29453]
 gi|294482378|gb|EFG30072.1| tyrosine recombinase XerC [Simonsiella muelleri ATCC 29453]
          Length = 302

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 80/312 (25%), Positives = 140/312 (44%), Gaps = 21/312 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
            L     +L  L  ++G S  TL +Y  D  +    L             +Q +  ++  
Sbjct: 12  FLVRLDAYLTQL-TQQGKSPHTLDAYRRDLIELANMLPEN----------QQPTRNDVVR 60

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            + +   +    RSL R L+  + + +YL      + + I +++  K    LP+A++ +Q
Sbjct: 61  VLKQLSQRGQHPRSLARKLTSWRQYAEYLVHLGELSSNPIAHIKAPKPPERLPKAIDREQ 120

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++D  +         +  R+ A++ L YG GLR++E  +L   +++ D   + + GK
Sbjct: 121 INQMIDQDI---PQSDDVLAIRDHAMIELFYGSGLRLAELHALNVDDVLLDAGWVMVSGK 177

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G + R VPL      AI  Y         ++ +L LF    G  L      + +    + 
Sbjct: 178 GKRQRQVPLTRPSIAAIDAYLSTRY---AVDGELALFTSRHGTRLCTRQIAKRLEIWSQN 234

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                  + H LRHS+A+HLL    D+R++Q +LGH  LSTTQIY  ++     D + ++
Sbjct: 235 NQANQHISPHMLRHSYASHLLQASRDVRAVQELLGHQNLSTTQIYAKLDF----DHLAQV 290

Query: 314 YDQTHPSITQKD 325
           YD THP   +K 
Sbjct: 291 YDDTHPRAKRKK 302


>gi|304387940|ref|ZP_07370113.1| tyrosine recombinase XerD [Neisseria meningitidis ATCC 13091]
 gi|304338037|gb|EFM04174.1| tyrosine recombinase XerD [Neisseria meningitidis ATCC 13091]
          Length = 291

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 132/300 (44%), Gaps = 20/300 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L ++R LS+ TL  Y  D  +    L+               +   +          
Sbjct: 10  LETLWLDRRLSQNTLNGYRRDLEKIARRLSQSGRTLKDADEADLAAAVYV---------D 60

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                S  R+LS  K    ++++  I T++    ++  K   ++P  + E+Q   L+   
Sbjct: 61  GEQRSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLL--- 117

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
              T         R+ A+L L+Y  GLR+SEA+ L   ++   +  +   GKGDK R+VP
Sbjct: 118 --ATPDTDTPHGLRDKALLELMYATGLRVSEAVGLNFGSVDLGRGCITALGKGDKQRMVP 175

Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +       +  YY    P  L       LF   +   ++  +    +++     G+    
Sbjct: 176 MGQESAYWVERYYTEARPLLLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIG-HI 234

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H+LRH+FATHL+ +G DLR +Q +LGH  L+TTQIYT+V +     W+  +  + H  
Sbjct: 235 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVAN----VWLQGVVKEHHSR 290


>gi|88607245|ref|YP_504674.1| tyrosine recombinase XerD [Anaplasma phagocytophilum HZ]
 gi|88598308|gb|ABD43778.1| tyrosine recombinase XerD [Anaplasma phagocytophilum HZ]
          Length = 311

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 87/319 (27%), Positives = 150/319 (47%), Gaps = 25/319 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L+ L   +G+S+ T+ SY+CD      FL     +      I   SY ++  +I  
Sbjct: 7   IRSFLEFLVSSKGVSENTVCSYKCDLEDLSQFLRRNGLK------IVDASYGDLCEYIRN 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     ++ R +S IK    +L K +I      L++ + +   +LPR ++E     L
Sbjct: 61  LNGRAYSAATVARRVSAIKGLCSFLYKDRIVHSDLSLSLESCRLGRTLPRVISESDIGML 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL-------TPQNIMDDQSTLRI 190
           +D      S E K +     AI+ +LY  G+RISE + L            + D   + I
Sbjct: 121 LDIAKADLSAEGKRL----YAIVNILYSSGVRISELIHLGFFEIDAMLHEHVGDIGYIII 176

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN--IQLPLFRGIRGKP-LNPGVFQRYI 247
           +GKG++ R+V L      +I  Y ++    +         LF G +    ++     + +
Sbjct: 177 KGKGNRERLVLLNEVAMDSIRAYLEVRKCFIAGENTESRWLFPGAKYDQCISRQRVGQLL 236

Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           ++L    G+ P   + H  RHSFATHLL+NG ++  IQ +LGH  LSTTQ+YT+V S+  
Sbjct: 237 KELAISAGIDPEKVSPHKFRHSFATHLLNNGSNIVFIQKMLGHVNLSTTQVYTHVASEQ- 295

Query: 307 GDWMMEIYDQTHPSITQKD 325
              + ++  + HP    K+
Sbjct: 296 ---LRDVLSRFHPMSKSKN 311


>gi|298373089|ref|ZP_06983079.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275993|gb|EFI17544.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058]
          Length = 294

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 145/305 (47%), Gaps = 14/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+ L+ E+  S  T+ SY  D  QF  + +           I +    +IR +I++
Sbjct: 2   LEEYLRYLQYEKNYSSRTVSSYRKDINQFTAYYSRIN----NSTDISKAEIDDIRLWIAE 57

Query: 78  RRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             +  KI  RS+ R LS +KSF K+L ++ I   S + ++   K   SLP    EK    
Sbjct: 58  LISVNKITSRSVCRKLSSMKSFYKFLLQKNIIDSSPV-DVVAPKIIKSLPVFFTEKDINL 116

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L  + +L    +  +  ARN+ ++ + Y  G+R  E + L   +I  ++ T+++ GK  K
Sbjct: 117 LGTDEIL---PDDSFETARNALMIEIFYQTGIRRMELIELKISDIDFERKTIKVLGKRRK 173

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R VP   ++   I  Y  +    +  +    LF    G+ L        + +    +  
Sbjct: 174 ERFVPFGEALENQIKHYLSIRQKRITTDN-DYLFVTKHGRQLYDKAVYNIVTRELGSITT 232

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + HTLRH+FAT +L NG DL SI+ +LGH  L+ TQ+YT+ + K     + ++Y  
Sbjct: 233 KTKHSPHTLRHTFATTMLDNGADLNSIKELLGHSSLAATQVYTHTSFKE----LQKLYQN 288

Query: 317 THPSI 321
           THP  
Sbjct: 289 THPRA 293


>gi|302871811|ref|YP_003840447.1| integrase family protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302574670|gb|ADL42461.1| integrase family protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 328

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 85/326 (26%), Positives = 156/326 (47%), Gaps = 36/326 (11%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-----------------IQT 62
           ++L  +   +  S  T++ Y  D R FL +L       +                  I+ 
Sbjct: 12  DFLNYMLTIKNKSPNTIKEYYYDLRTFLRYLKAKDLNVLNQIEKIEDLENIDVSSFEIEK 71

Query: 63  IRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLK 120
           ++ ++ + +  + S   T+      S  R ++ I+SF KYL  + K+  ++   ++ + K
Sbjct: 72  LKTITLSNLYEYFSFLATRFNNSPYSRARKVASIRSFFKYLYSKAKLIPDNPAKDLESPK 131

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                PR L  +++  L+  +              + AI+ L   CGLR+SE +++   +
Sbjct: 132 LGKRNPRYLTLEESKKLLSAIDGENKER-------DFAIITLFLNCGLRLSELVNINLSD 184

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I DD   LRI GKG+K RI+ L  + ++AI  Y  + P +  +  +  LF   R K ++ 
Sbjct: 185 IKDD--MLRIVGKGNKERIIYLNKACKEAIENYLKVRPTE-GVKDKDALFLSERKKRISR 241

Query: 241 GVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
              Q  + +  +  G+     +AH LRH+ AT +  +G  D+RS+Q+ILGH  +STT+IY
Sbjct: 242 RTVQYIVEKYVKMAGINQKKISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIY 301

Query: 299 TNVNSKNGGDWMMEIYDQTHPSITQK 324
           T+VN     D + + +++ +P   +K
Sbjct: 302 THVND----DDIKKAFEK-NPLSGEK 322


>gi|237711657|ref|ZP_04542138.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|237725901|ref|ZP_04556382.1| tyrosine type site-specific recombinase [Bacteroides sp. D4]
 gi|265753077|ref|ZP_06088646.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
 gi|229435709|gb|EEO45786.1| tyrosine type site-specific recombinase [Bacteroides dorei
           5_1_36/D4]
 gi|229454352|gb|EEO60073.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|263236263|gb|EEZ21758.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
          Length = 293

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 74/304 (24%), Positives = 139/304 (45%), Gaps = 15/304 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L  L  ER  S+ T+ SY  D  +F  ++    E          +    +R ++   
Sbjct: 4   DSFLDYLRFERNYSEKTIVSYGIDLIKFEEYIRGKDEN----VDFTTVDADLVRGWVMNL 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S+ R LS ++SF ++L K+ +  E  +L +   K    LP  L E++   L+
Sbjct: 60  IEDGYTSASVNRKLSSLRSFYRFLLKKGVIGEDPMLKIIGPKNKKPLPVFLKEREMDRLL 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D        +  +   R+  +L + Y  G+R+SE + L   ++    S +++ GK +K R
Sbjct: 120 D----DVPFKEDFTGCRDRMVLEMFYATGMRLSELIGLNDVDVDFSASLIKVTGKRNKQR 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR-QLRRYLGLP 257
           ++P    +R+A+  Y  +    L        F    GK + PG     ++  L + + L 
Sbjct: 176 LIPFGEELRRAMFVYLKIRNEVLPGKA-GAFFVLKNGKRMYPGKVYLLVKRNLSKVVSLK 234

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FAT +L+N  +L +++ +LGH  L+T    T + +    + + ++Y+Q 
Sbjct: 235 KR-SPHVLRHTFATAMLNNEAELGAVKELLGHSSLTT----TEIYTHTTFEELKKVYEQA 289

Query: 318 HPSI 321
           HP  
Sbjct: 290 HPRA 293


>gi|309810355|ref|ZP_07704190.1| tyrosine recombinase XerD [Dermacoccus sp. Ellin185]
 gi|308435668|gb|EFP59465.1| tyrosine recombinase XerD [Dermacoccus sp. Ellin185]
          Length = 311

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 91/323 (28%), Positives = 140/323 (43%), Gaps = 22/323 (6%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           PE  S EL +    WL +L +ERGLS  TL +Y  D  ++L +LA        + ++  +
Sbjct: 4   PE-PSLELTQVMTQWLHHLRVERGLSPHTLAAYRRDVTRYLGYLAAS-----GVTSLDGV 57

Query: 67  SYTEIRAFISKRRTQKIGD-----RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
             + + AF+   R    G       S  R+L  ++    ++            ++   + 
Sbjct: 58  EESRVEAFLRSLREGGQGHPPLAASSAARALVAVRRLHAFVSLET-DAPDAATDVAPPRL 116

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              LP+A+       L    L            R+ A+L +LYG G R+SE + L   ++
Sbjct: 117 PRKLPKAIPLADVERL----LAAAGDGEDAGSLRDRALLEVLYGVGARVSEVVGLDVDDV 172

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP--FDLNLNIQLPLFRGIRGKPLN 239
                +LR+ GKG K RIVPL      A+  Y                 +F   RG  L+
Sbjct: 173 DLMSRSLRLFGKGSKERIVPLGRYAADALGSYLTRERPALAAKGKAGAAVFLNQRGGRLS 232

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                  +R+     GL    + HTLRHS+ATHLL  G D+R +Q +LGH  ++TTQIYT
Sbjct: 233 RQSVFGLVRRAAEVAGLDGEISPHTLRHSYATHLLEGGADVRVVQELLGHASVTTTQIYT 292

Query: 300 NVNSKNGGDWMMEIYDQTHPSIT 322
            V+ +     + E +   HP   
Sbjct: 293 MVSVQQ----LRETFAAAHPRAR 311


>gi|227539590|ref|ZP_03969639.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227240503|gb|EEI90518.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 293

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 78/304 (25%), Positives = 144/304 (47%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +Q +L  L  E+  S  T+++Y  +   F  FL      +       +  +  IR ++S 
Sbjct: 3   QQRFLNFLRFEKRYSNHTIEAYTHELNVFFTFLQDQGVPE------EEADHRVIRLYLSH 56

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S+ RS+S ++++ K+L++  +T ++ +  ++ LK    LP  + + + + L
Sbjct: 57  LMEEGRQATSVNRSISALRTYYKFLQRESLTDQNPLTLIKALKTPKKLPSVMEKDKMVGL 116

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D +         + D R+  +L LL+G G+R++E L +   +I      + I GK +K 
Sbjct: 117 LDQMEGAV---DSFTDERDYLVLELLFGTGIRLTELLQIKITDIDFYNKNILILGKRNKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VP+  ++ + +  Y          N    L     GK   P +  R + +    +   
Sbjct: 174 RLVPVNHTLLEKLKIYIQQLDNQKIDNKTAFLIVTKEGKQAYPKMIYRIVHRYLSLISTQ 233

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FAT LL NG DL +I+ +LGH  L+ TQ+YT+    N  + +  +Y Q 
Sbjct: 234 RKKSPHVLRHTFATALLDNGADLNAIKELLGHAGLAATQVYTH----NSVERLKSVYKQA 289

Query: 318 HPSI 321
           HP  
Sbjct: 290 HPKA 293


>gi|187779614|ref|ZP_02996087.1| hypothetical protein CLOSPO_03210 [Clostridium sporogenes ATCC
           15579]
 gi|187773239|gb|EDU37041.1| hypothetical protein CLOSPO_03210 [Clostridium sporogenes ATCC
           15579]
          Length = 326

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 85/327 (25%), Positives = 151/327 (46%), Gaps = 27/327 (8%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE------- 55
             N+ ++    L +   ++L  L   +G S+ T++SY+ D   F  FL  Y         
Sbjct: 2   KYNIQQLYDPNLPQRLNDFLNYLRTIKGKSENTIESYKLDLIMFFRFLKLYKGMVPGETE 61

Query: 56  ------EKITIQTIRQLSYTEIRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KI 107
                   I+ + I+ +S T++ AF+S     +  G  +  R ++ ++SF K+L+ + KI
Sbjct: 62  FNDIEISNISDEDIKNISLTDLFAFVSFAENYRNNGSYAKARKVATLRSFFKFLQGKVKI 121

Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
             E+  L + + K S   P  L   ++  L+ ++              +  I+ +   CG
Sbjct: 122 IKENPALELESPKISKRNPVYLTLDESKRLLSSIDGKFKER-------DLCIVTMFLNCG 174

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQ 226
           LR+SE   +   NI +D   L + GKG+K R V L  +  K + +Y  +       +  +
Sbjct: 175 LRLSELCGINISNIKND--VLTVIGKGNKERTVYLNKACIKTLNDYLSVRKEMGEKIVDK 232

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLRSIQ 284
             LF       +N    +  +++  +  GL     + H LRH+ AT +  +G  D+RS+Q
Sbjct: 233 DALFLSKNYTRINKRSVEMLVKKYVKKSGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQ 292

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMM 311
            ILGH  +STTQIYT+V+S    + + 
Sbjct: 293 MILGHENISTTQIYTHVDSDRLREAVK 319


>gi|34540214|ref|NP_904693.1| phage integrase family site specific recombinase [Porphyromonas
           gingivalis W83]
 gi|34396526|gb|AAQ65592.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Porphyromonas gingivalis W83]
          Length = 400

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 143/307 (46%), Gaps = 14/307 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L  E   S+ T+  Y  D  ++  F + +T E   +    +      RA++  
Sbjct: 8   IERFLYYLRYEVHASERTVCDYAQDLNRYAAFFSEHTGE---VFEPSERDKDVARAWLFS 64

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    S++R LS +KSF KY+ K  +  +S +  +R  KK   LP  +   +   +
Sbjct: 65  LMEAGQKSSSVQRRLSALKSFYKYMVKIGLIGQSPVRMLRGPKKERPLPVFVPNNEMEKV 124

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++  +     E  +   R+  IL  LY  GLR SE  +L    + D    +RI GK +K 
Sbjct: 125 LNKPI----REDDFEAVRDRLILETLYEVGLRRSEIATLKDSAVEDKAGCIRIIGKRNKE 180

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RIVP    ++  I  Y ++   +  +      F  + G+PL   V  + +R     +   
Sbjct: 181 RIVPFGKRLQDMIDNYRNIR--EEKVGKSDFFFVSLDGRPLTGEVVYKIVRTALANVPHL 238

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRHSFAT +L++G DL S++ +LGH  LSTT  YT+++ +     + ++Y+  
Sbjct: 239 TKRSPHVLRHSFATEMLNHGADLISVKELLGHDSLSTTVQYTHISFEQ----LRQMYN-A 293

Query: 318 HPSITQK 324
           HP   ++
Sbjct: 294 HPRAKKE 300


>gi|149184272|ref|ZP_01862590.1| integrase [Erythrobacter sp. SD-21]
 gi|148831592|gb|EDL50025.1| integrase [Erythrobacter sp. SD-21]
          Length = 292

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 85/310 (27%), Positives = 141/310 (45%), Gaps = 27/310 (8%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           + +  ++L  L  ERG ++ TL +Y  D  Q          EK+   T  Q         
Sbjct: 1   MSDIDDFLAMLAAERGAARNTLLAYGRDLNQ----AEELLGEKLAGATPAQ--------- 47

Query: 75  ISKRRT--QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           ++K       +   +L R +S ++ F  +L       +     +        LP+ L+  
Sbjct: 48  LAKLGQGWSSLAPATLARKISALRQFFGFLVDEGEREDDPTYALPRPATRRPLPKILSHA 107

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q   L        + + +    R  A+L LLYG GLR SE +SL    +  D+  L + G
Sbjct: 108 QVEALFGRAEDEAASD-RPQAVRLLAMLELLYGSGLRASELVSLPLSAVPRDEPFLTVTG 166

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG + R+VP+    ++A+  +  L P   N      LF   R   L      + +++L  
Sbjct: 167 KGGQARLVPVSTRAKQALSRWLALRPTGSN-----YLFPS-RSGHLTRIRLYQMLKELAV 220

Query: 253 YLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              LP    + H LRH+FATHLL  G DLR++Q++LGH  ++TTQIYT+V++      ++
Sbjct: 221 RADLPPEKLSPHVLRHAFATHLLEGGADLRALQTLLGHADIATTQIYTHVDAAR----LV 276

Query: 312 EIYDQTHPSI 321
           ++ ++ HP  
Sbjct: 277 KLVNERHPLA 286


>gi|312130041|ref|YP_003997381.1| integrase family protein [Leadbetterella byssophila DSM 17132]
 gi|311906587|gb|ADQ17028.1| integrase family protein [Leadbetterella byssophila DSM 17132]
          Length = 282

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 88/301 (29%), Positives = 153/301 (50%), Gaps = 23/301 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L+ ER LS  T++SY+ D  Q   FL              Q+S  ++RA++     
Sbjct: 5   FLSHLQHERRLSPHTIKSYKLDLEQLHTFLNGI--------DPSQISTEDLRAWVVSLSE 56

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             + +RS+ R L+  ++F  +L+++KI +++    +++LK    LP  L E+    L + 
Sbjct: 57  DGLENRSINRKLASARAFFTFLQRKKIISQNPADLIKSLKTPKPLPVFLEERNTQDLFE- 115

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                     +   R+  +L LLYG G+R+SE +S+  ++   +   +++ GK  K RI+
Sbjct: 116 ---QLEFTEDFEGLRDKLLLELLYGTGIRLSELISIQVKD--LENDRVKVLGKRSKYRII 170

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           PL  +++  I  Y      +L+      L    +G+ L P   QR ++   + +     T
Sbjct: 171 PLHRTLQDLIKRYL-----ELHPKNDTHLLLTDKGEALYPVFVQRKVKHYLQQISTLTKT 225

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H LRH+FATHLL+ G DL +I+ +LGH  LS TQIYT+    N    + E++ + HP 
Sbjct: 226 SPHVLRHTFATHLLNRGADLNAIKELLGHANLSATQIYTH----NSIQKLKEVFQKAHPK 281

Query: 321 I 321
            
Sbjct: 282 A 282


>gi|59800775|ref|YP_207487.1| hypothetical protein NGO0329 [Neisseria gonorrhoeae FA 1090]
 gi|194098059|ref|YP_002001107.1| XerD [Neisseria gonorrhoeae NCCP11945]
 gi|239998519|ref|ZP_04718443.1| XerD [Neisseria gonorrhoeae 35/02]
 gi|240013644|ref|ZP_04720557.1| XerD [Neisseria gonorrhoeae DGI18]
 gi|240016083|ref|ZP_04722623.1| XerD [Neisseria gonorrhoeae FA6140]
 gi|240117462|ref|ZP_04731524.1| XerD [Neisseria gonorrhoeae PID1]
 gi|240120714|ref|ZP_04733676.1| XerD [Neisseria gonorrhoeae PID24-1]
 gi|240123018|ref|ZP_04735974.1| XerD [Neisseria gonorrhoeae PID332]
 gi|240125270|ref|ZP_04738156.1| XerD [Neisseria gonorrhoeae SK-92-679]
 gi|240127724|ref|ZP_04740385.1| XerD [Neisseria gonorrhoeae SK-93-1035]
 gi|268594379|ref|ZP_06128546.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 35/02]
 gi|268603162|ref|ZP_06137329.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID1]
 gi|268681643|ref|ZP_06148505.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID332]
 gi|268683870|ref|ZP_06150732.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-92-679]
 gi|268686113|ref|ZP_06152975.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-93-1035]
 gi|293399522|ref|ZP_06643675.1| tyrosine recombinase XerD [Neisseria gonorrhoeae F62]
 gi|59717670|gb|AAW89075.1| putative integrase/recombinase [Neisseria gonorrhoeae FA 1090]
 gi|193933349|gb|ACF29173.1| XerD [Neisseria gonorrhoeae NCCP11945]
 gi|268547768|gb|EEZ43186.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 35/02]
 gi|268587293|gb|EEZ51969.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID1]
 gi|268621927|gb|EEZ54327.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID332]
 gi|268624154|gb|EEZ56554.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-92-679]
 gi|268626397|gb|EEZ58797.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-93-1035]
 gi|291610091|gb|EFF39213.1| tyrosine recombinase XerD [Neisseria gonorrhoeae F62]
 gi|317163795|gb|ADV07336.1| hypothetical protein NGTW08_0364 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 291

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 131/296 (44%), Gaps = 16/296 (5%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L ++R LS+ TL SY  D  +    L+               +   +          
Sbjct: 10  LETLWLDRRLSRNTLDSYRRDLEKIARRLSLCGRTLKDADEADLAAAVYV---------D 60

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                S  R+LS  K    ++++  +  ++    ++  K   ++P  + E+Q   L+   
Sbjct: 61  GEQRSSQARALSACKRLYVWMEREGMRADNPTRLLKPPKIDRNIPTLITEQQISRLL--- 117

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
                        R+ A+L L+Y  GLR+SEA+ L   N+  D+  +   GKGDK R+VP
Sbjct: 118 --AAPDTDTPHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITTLGKGDKQRMVP 175

Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +       +  YY    P  L       LF   +   ++  +    +++     G+    
Sbjct: 176 MGQESAYWVERYYTEARPLLLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIG-HI 234

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           + H+LRH+FATHL+ +G DLR +Q +LGH  L+TTQIYT+V +      + E + +
Sbjct: 235 SPHSLRHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANVRLHSVVKEHHSR 290


>gi|228471614|ref|ZP_04056388.1| tyrosine recombinase XerC [Capnocytophaga gingivalis ATCC 33624]
 gi|228277033|gb|EEK15719.1| tyrosine recombinase XerC [Capnocytophaga gingivalis ATCC 33624]
          Length = 296

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 84/308 (27%), Positives = 149/308 (48%), Gaps = 14/308 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   L +E+  S  T+ +Y  D ++F  +L       +    + Q++Y+ IR++I  
Sbjct: 2   IEAFENYLSLEKKYSSHTVTAYLADVQEFAAYLTEVEPTML----LPQVNYSLIRSWIIH 57

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + I +RS+ R L+ +K++  +L +      S  +    LK    +    + ++    
Sbjct: 58  LVERGITNRSINRKLASLKAYYAFLVRTLAIKASPFVPHIPLKAPKKISIPFSSRE---- 113

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D+VL     E  +   RN  I+ L Y  G+R +E + L   +I   Q T+++ GK +K 
Sbjct: 114 IDSVLSQPIVEDSYTQMRNKTIIELFYATGMRRAELIDLKISDIDFSQKTVKVLGKRNKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RI+PL+ +V + + +Y  L         ++ LF   +GK + P +    I          
Sbjct: 174 RIIPLIHTVVETLEKYLTLRKG--VETNEVFLFLTDKGKKMYPKLVYNIINSYFSTATTK 231

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           L  + H LRHSFATHLL NG DL +++ +LGH  L+ TQ+YT+ +       +   Y   
Sbjct: 232 LKKSPHVLRHSFATHLLDNGADLNAVKELLGHAGLAATQVYTHSSIAE----LKNQYKNA 287

Query: 318 HPSITQKD 325
           HP +T K+
Sbjct: 288 HPRMTNKE 295


>gi|313906097|ref|ZP_07839448.1| integrase family protein [Eubacterium cellulosolvens 6]
 gi|313469086|gb|EFR64437.1| integrase family protein [Eubacterium cellulosolvens 6]
          Length = 281

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 65/286 (22%), Positives = 129/286 (45%), Gaps = 12/286 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++   Q ++  L   +  S  T  SY+ D +    +L     E+  + +    + T + +
Sbjct: 2   MMNAIQEYITYLHDVKKTSYNTEISYKRDLKNAAAYL-----EEQRVSSFESATETNLYS 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++     +K    ++ RS++ ++SF +YL +     +    +++  +    +P  L   +
Sbjct: 57  YMLYLEREKKSAATVSRSIASLRSFYQYLLREHKIDKDPSEHLKAPRVEKKVPEILTIDE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           A  L+           K    R+ A+L LLY  G+R+SE + +  +++  D   +  + +
Sbjct: 117 ADRLL-----AQPDRKKNKGLRDRAMLQLLYCTGIRVSELVHMKMEDVNLDLGYITCR-E 170

Query: 194 GDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
             + RI+P+    R  + EY +      L       LF    G  ++   F + ++   +
Sbjct: 171 NSRERIIPMTQGTRIILDEYLESARDSLLKGKESEYLFCNCSGGEMSRQGFWKVLKVYAQ 230

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             G+    T HT+RHSFA H L  G D+ S+Q +LGH  ++T Q+Y
Sbjct: 231 DAGIKKDITPHTMRHSFAAHQLQKGTDIHSVQRMLGHAGVTTMQMY 276


>gi|260655773|ref|ZP_05861242.1| tyrosine recombinase XerD [Jonquetella anthropi E3_33 E1]
 gi|260629389|gb|EEX47583.1| tyrosine recombinase XerD [Jonquetella anthropi E3_33 E1]
          Length = 308

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 78/315 (24%), Positives = 141/315 (44%), Gaps = 18/315 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++ +  +   ++   L  ER  S  T++SY     ++  +      + ++          
Sbjct: 1   MNEQFDRSADDFADYLRFERQSSDHTVRSYARALAKWRSWCETSGADPMSPDDATTP--- 57

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
               FI+  R Q +   +++++++ ++S+++Y +       S +       K   LP+ L
Sbjct: 58  ---RFIAAMREQDLASSTVQQTMAALRSWVRYRQSTGSAAASALRLPALPDKPRRLPQVL 114

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           ++ +   L+++          W+D R+  IL +L  CGLR SE  SLT  ++  D   L 
Sbjct: 115 SDGEIDRLLESC-----SGESWMDVRDRTILQILADCGLRASEICSLTLASVDMDTRFLH 169

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           ++GKG+K R VP   SV   + ++  +          +  LF    G  L      R IR
Sbjct: 170 VRGKGNKDRSVPFGASVADWLTKWLAVRADGHPTGGARSFLFASRTGDRLTRIDLWRLIR 229

Query: 249 QLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +     G+       H LRHS AT LL  G DLR++Q  LGH  + TT+ YT+ + +   
Sbjct: 230 RRGERAGVAKARLHPHVLRHSVATRLLRRGMDLRTLQEFLGHSSIGTTEKYTHFDLE--- 286

Query: 308 DWMMEIYDQTHPSIT 322
             + ++YD+ HP   
Sbjct: 287 --LRDVYDRCHPHAR 299


>gi|313206990|ref|YP_004046167.1| integrase family protein [Riemerella anatipestifer DSM 15868]
 gi|312446306|gb|ADQ82661.1| integrase family protein [Riemerella anatipestifer DSM 15868]
          Length = 291

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 78/308 (25%), Positives = 142/308 (46%), Gaps = 20/308 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + IE+  S  TL SY  D + F  F+     E   + T+  +    IR F+  
Sbjct: 2   VEKFLDYITIEKRYSLNTLASYSRDLQDFSDFVK----ETEGVDTLISVDKKVIRNFVVY 57

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQAL 135
                +  R++ R LS ++SF  YL K  I + S +  + +LK      +P   ++K+  
Sbjct: 58  LSENNLSKRTINRKLSALRSFYIYLVKLGIISASPMETVSSLKFYGEKQIP--FSQKEME 115

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L        +   +     N  I+ LLY  G+R SE   L  +++   Q+ +R+ GKG+
Sbjct: 116 NL-------QNLLNEEKLLLNKLIIELLYQTGMRKSELCRLALKDVDFIQNRIRVVGKGN 168

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K+R +P+  ++++ +  Y +        N+    F    G+ L        +      + 
Sbjct: 169 KMREIPISENIKRELKLYLEKERKPTKENL-DYFFVRESGQKLTGKFVYSVVNDYLSAVT 227

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRHSFATH+L NG ++  ++ ILGH  L++TQ+YT+ +     + + ++ +
Sbjct: 228 SKKKKSPHVLRHSFATHVLENGAEIAQVKEILGHASLASTQVYTSTD----VNKLKKVLN 283

Query: 316 QTHPSITQ 323
             HP   +
Sbjct: 284 SFHPRGKK 291


>gi|225023845|ref|ZP_03713037.1| hypothetical protein EIKCOROL_00711 [Eikenella corrodens ATCC
           23834]
 gi|224943319|gb|EEG24528.1| hypothetical protein EIKCOROL_00711 [Eikenella corrodens ATCC
           23834]
          Length = 307

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 86/312 (27%), Positives = 141/312 (45%), Gaps = 26/312 (8%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            + + WL +L+ ++  S  TL +Y  D      F           Q   +L+     A +
Sbjct: 7   AQIEAWLHSLQ-QQNHSPHTLAAYRRDLTWLADF-----------QPQSKLARPLFTAAL 54

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            +   Q    RS+ R LS  + F ++L +           ++  K    LP+A+  +   
Sbjct: 55  RQLGQQNQHPRSIARRLSAWRQFCRWLVQTGYLKADPTHGLKAPKAPERLPKAVPAEPLN 114

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+D            +D+R+ AI  LLYG GLR++EA +L   ++      + + GKG 
Sbjct: 115 QLLDQ------APENPLDSRDLAIFELLYGSGLRLAEACALDLDDLNLQSGWIAVTGKGR 168

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R +PL     +A+  Y            +  LF G  G+ L     Q+ ++Q   + G
Sbjct: 169 KQRHLPLTAQSIRALAGYLKTRT---AAPDETALFTGRTGRRLGARQIQKRLQQFATHHG 225

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRHS+A+HLL N  D+R++Q +LGH +L+TTQ YT ++     D +  IYD
Sbjct: 226 -SRHLSPHMLRHSYASHLLQNARDIRAVQELLGHSQLATTQHYTKLDF----DHLARIYD 280

Query: 316 QTHPSITQKDKK 327
             HP   ++  K
Sbjct: 281 DAHPRAKRRQGK 292


>gi|218767874|ref|YP_002342386.1| putative integrase/recombinase [Neisseria meningitidis Z2491]
 gi|34223068|sp|Q9JV76|XERD_NEIMA RecName: Full=Tyrosine recombinase xerD
 gi|121051882|emb|CAM08188.1| putative integrase/recombinase [Neisseria meningitidis Z2491]
 gi|319410121|emb|CBY90457.1| tyrosine recombinase XerD [Neisseria meningitidis WUE 2594]
          Length = 291

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 132/300 (44%), Gaps = 20/300 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L ++R L++ TL  Y  D  +    L+               +   +          
Sbjct: 10  LETLWLDRRLNQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYV---------D 60

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                S  R+LS  K    ++++  I T++    ++  K   ++P  + E+Q   L+   
Sbjct: 61  GEQRSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLL--- 117

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
                        R+ A+L L+Y  GLR+SEA+ L   N+  D+  +   GKGDK R+VP
Sbjct: 118 --AAPDTDTPHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVP 175

Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +       +  YY    P  L       LF   +   ++  +    +++     G+    
Sbjct: 176 MGQESAYWVGRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIG-HI 234

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H+LRH+FATHL+ +G DLR +Q +LGH  L+TTQIYT+V +     W+  +  + H  
Sbjct: 235 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVAN----VWLQGVVKEHHSR 290


>gi|73666749|ref|YP_302765.1| Phage integrase, N-terminal SAM- like [Ehrlichia canis str. Jake]
 gi|72393890|gb|AAZ68167.1| Phage integrase, N-terminal SAM- like protein [Ehrlichia canis str.
           Jake]
          Length = 309

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 85/315 (26%), Positives = 155/315 (49%), Gaps = 25/315 (7%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  + +L+ +  E+ +S  T QSY+ D      F++           +   S  E++ +I
Sbjct: 5   KCVEIFLEAITAEKHISYNTYQSYKTDLLGLCEFVSKKN------LLLVDTSINELQNYI 58

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                +     ++ R +S IK+F  +L +  +      L +   K S SLP+AL+ ++  
Sbjct: 59  RLLYEKGYKANTVLRKISAIKNFYGFLYRDNMIESDPTLYLDAPKLSRSLPKALSFEEIS 118

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT-------PQNIMDDQSTL 188
            L+D   L  S + + ++    A++ +LY  G+RISE + L         ++   +   +
Sbjct: 119 RLLDVAALDGSPDGRRLN----AMVNILYSSGIRISELVCLKFYSVLEALKDHNAEIYHI 174

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRG-KPLNPGVFQR 245
           +I+GK +K RIV L  S  ++I +Y ++  + +     +   LF G +   P+      +
Sbjct: 175 KIKGKANKERIVLLNLSAVESIKKYIEIYKYFVPNGFEVSQWLFPGTKFDYPITRQRVGQ 234

Query: 246 YIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            ++ L    G+ +   + H LRHSFATHLL+NG ++  IQ +LGH  LSTTQIYT++ ++
Sbjct: 235 LLKDLAMNAGIDITKISPHKLRHSFATHLLNNGSNIIFIQKMLGHANLSTTQIYTHIANE 294

Query: 305 NGGDWMMEIYDQTHP 319
                +  +  + HP
Sbjct: 295 ----KLKNVLLKFHP 305


>gi|196250937|ref|ZP_03149621.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|196209578|gb|EDY04353.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 301

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 145/303 (47%), Gaps = 14/303 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
             +    ++  L+IE+  S  T+  Y  D R F  FL  +     ++Q +  ++ T +R 
Sbjct: 3   FRQAIDEFVLYLQIEKNYSLNTVDGYAYDLRCFENFLIQHG---YSVQ-LNDITKTHVRR 58

Query: 74  FISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           FI  + T + +  R++ R +S +KSF KY  K  +     ++ +   K  + LP  ++  
Sbjct: 59  FIQHQITKENVKPRTIYRRISCLKSFSKYCVKENLIDSDFMIGIDTPKTDSKLPTYMSLS 118

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L          +   +  RN  +  LL   G+R SE + LT + I    +T+RI G
Sbjct: 119 ELRKLFHF----LEQDNSRMAMRNHLLFKLLATTGMRRSEIVELTWEQIDLSNNTIRIYG 174

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R++PL P V   I  Y      +  L+   P+F    GK LNP    +  +++ +
Sbjct: 175 KGKKERLLPLHPMVVPLIKSY-MGSLEEYQLHPSQPVFLNKNGKKLNPRGLHKIFKEILQ 233

Query: 253 YLGLPL-STTAHTLRHSFATHLLS---NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
             GLP    + H LRH+FAT L+       DLR++Q +LGH  L TTQ+YT+V+ +    
Sbjct: 234 KAGLPPQRFSLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVDFEQKKK 293

Query: 309 WMM 311
            + 
Sbjct: 294 AIE 296


>gi|62185317|ref|YP_220102.1| site-specific tyrosine recombinase XerD [Chlamydophila abortus
           S26/3]
 gi|62148384|emb|CAH64151.1| putative site-specific recombinase [Chlamydophila abortus S26/3]
          Length = 299

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 148/305 (48%), Gaps = 21/305 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   L ++RGLS  ++ +Y  D   FL           TI +I ++S   +  F+ +
Sbjct: 11  LEQFTLFLSVDRGLSSNSISAYCQDITLFLKIN--------TITSIAEISQDSVHLFVRQ 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +K  + +L R L  +K F ++LK+ K+     +  + + K    LP  L  ++   L
Sbjct: 63  LHKRKEAEATLARRLIALKVFFRFLKEAKLLEHPPL--IEHPKIWKRLPTVLTPQEVDAL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +   +   +  +  I  R++AIL+ LY  G+R+SE   L   ++ DD   LR+ GKG K 
Sbjct: 121 L--AIPKKTPTSSLISTRDTAILHTLYSTGIRVSELCGLHIGDVSDD--FLRVTGKGSKT 176

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLN--IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R+VPL      AI  Y      +L      +  LF  IRG  L      + I    + + 
Sbjct: 177 RLVPLGKLASAAIDAYLCPFRENLQKKQSEEHHLFLSIRGHKLERSCVWKRIHYYAKQVT 236

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H+LRH+FATHLL N  DLR IQ +LGH R+++T++YT+V      D +ME + 
Sbjct: 237 -HKRVSPHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHV----AADTLMENFL 291

Query: 316 QTHPS 320
             HP 
Sbjct: 292 SYHPR 296


>gi|304316827|ref|YP_003851972.1| integrase [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778329|gb|ADL68888.1| integrase family protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 327

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 82/318 (25%), Positives = 145/318 (45%), Gaps = 26/318 (8%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE------------EKI 58
           + EL    + +L      +  S  T+++YE D   F  F+                   +
Sbjct: 8   NIELPPILEEFLNYFSTIKARSPNTVKAYEYDLVLFFRFIKVRKNLSSDSDFDQIDISDV 67

Query: 59  TIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNM 116
            I  I  +   ++ A++S     +     +  R ++ ++SF  Y   KRK+ T++  L +
Sbjct: 68  DISLIESIDLNDLYAYLSFVTHERSNTPPARARKVASLRSFYNYLYAKRKVITKNPALEL 127

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
            + K     P  L   +++ L+D++             R+ AI+ L   CGLR+SE  ++
Sbjct: 128 ESPKLGIRQPVYLTLDESMKLLDSI-------DGPFKERDYAIITLFLNCGLRLSELANI 180

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
              +I DD+  L + GKG+K R V L  +   AI EY  + P D  +  +  LF   R +
Sbjct: 181 NISDIKDDK--LTVIGKGNKQRTVYLNDACISAINEYLKVRPHD-GVKDKKALFLSKRLQ 237

Query: 237 PLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLST 294
            ++    Q  +++  +   L     + H LRH+ AT +   G  D+R++Q +LGH  +ST
Sbjct: 238 RISIKTIQYIVKKHLKDANLDGKKYSTHKLRHTAATLMYRYGKVDIRTLQRLLGHSNVST 297

Query: 295 TQIYTNVNSKNGGDWMME 312
           TQIYT+V+     D + +
Sbjct: 298 TQIYTHVDDSQLRDAVSK 315


>gi|329943079|ref|ZP_08291853.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila
           psittaci Cal10]
 gi|313848235|emb|CBY17236.1| putative site-specific recombinase [Chlamydophila psittaci RD1]
 gi|328814626|gb|EGF84616.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila
           psittaci Cal10]
          Length = 299

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 96/305 (31%), Positives = 151/305 (49%), Gaps = 21/305 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   L ++RGLS  ++ +Y  D   FL   A        I +I ++S   +  F+ +
Sbjct: 11  LEQFTLFLSVDRGLSCNSISAYIQDITLFLKINA--------ITSIAEISQDSVHLFVDQ 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +K  + +L R L  +K F ++LK+ K+     +  + + K    LP  L  K+  TL
Sbjct: 63  LHKRKEAEATLARRLIALKVFFRFLKEAKLLEHPPL--IEHPKIWKRLPTVLTPKEVDTL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +      T+  +  I  R++AIL+ LY  G+R+SE   L   ++ DD   LR+ GKG K 
Sbjct: 121 LAIPKKTTT--SSMISTRDTAILHTLYSTGIRVSELCGLHIGDVSDD--FLRVTGKGSKT 176

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLN--IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R+VPL     KAI  Y      +L      +  LF  IRG+ L      + I    + + 
Sbjct: 177 RLVPLGKLASKAIDAYLCPFRENLQKKQPEEHHLFLSIRGRKLERSCVWKRIHYYAKQVT 236

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H+LRH+FATHLL N  DLR IQ +LGH R+++T++YT+V      D +ME + 
Sbjct: 237 -HKRVSPHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHV----AADTLMENFL 291

Query: 316 QTHPS 320
             HP 
Sbjct: 292 SYHPR 296


>gi|332297599|ref|YP_004439521.1| Tyrosine recombinase xerC [Treponema brennaborense DSM 12168]
 gi|332180702|gb|AEE16390.1| Tyrosine recombinase xerC [Treponema brennaborense DSM 12168]
          Length = 311

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 85/300 (28%), Positives = 153/300 (51%), Gaps = 12/300 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   L      + +T ++Y      FL +L      +   Q + +++  ++  ++ +R+T
Sbjct: 19  FYAELVSVERKAVMTAETYSGAVSLFLDWLQKKHPAESVEQALERVTVQDLLYYLVQRKT 78

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
               + ++ + +S ++SF  +L  R + +E+    +   K   +LPR L+ +Q  T +  
Sbjct: 79  VGADELTIAKDISALRSFGNFLVARHVWSENCACLLERPKARRALPRVLSPEQVETFL-- 136

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
              +    ++ +  R+ A+  L+Y CGLRISEA  L  QN+   +  + ++GKGDK RIV
Sbjct: 137 ---NAIDVSEPLGVRDRALFELIYSCGLRISEASGLLLQNLHLKERIVLVRGKGDKERIV 193

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P   +  + +  +       L  + Q+P +F   +G PL+     +  +++    G+   
Sbjct: 194 PFGDAALRWLSSWLSEYRPQLVGSRQIPYVFVNYKGMPLSRKGIWKRFQEIEVRSGVSAK 253

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              HTLRHSFATHLL+ G DLRS+Q +LGH  L TTQIYT+++     D +   +D+  P
Sbjct: 254 V--HTLRHSFATHLLAGGADLRSVQELLGHSDLVTTQIYTHIDD----DELRLYHDEFFP 307


>gi|198284453|ref|YP_002220774.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218667286|ref|YP_002427120.1| tyrosine recombinase XerC [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198248974|gb|ACH84567.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218519499|gb|ACK80085.1| tyrosine recombinase XerC [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 314

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 83/312 (26%), Positives = 144/312 (46%), Gaps = 12/312 (3%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
               +++ L     +S  T+ +Y  D   +  F     +       I Q+    +RA++ 
Sbjct: 6   AIAQFIETLRQGGRVSPATISAYSRDLHAWARFALQRGQ-----TEIAQMDRGSLRAYLL 60

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             R++ +  RSL+R  + +++  ++L++      + +  +   +    LP  L   QA  
Sbjct: 61  AERSRGVSVRSLRRHFAALRALYRHLQQDAPELRNPVSGLAMPRAEQRLPDWLTVDQARL 120

Query: 137 LVDNVLLHT-SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           L+   +  T +    +   R+  IL LLY   LR+SE   L   ++     T+R+ GKG 
Sbjct: 121 LMQPAISDTEAAPQDFTGLRDQLILELLYSSALRVSELAGLNLGDLDPHAGTVRVLGKGR 180

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RIVP+      A+   Y      +  + +  LF   RG+ L     Q  +++L     
Sbjct: 181 KERIVPVGQPAWAALRA-YLAARPAVAASDEPALFVNRRGQRLTVRSIQVRVKKLGD-AR 238

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L      HTLRHS A+HLL + GDLR++Q  LGH  + TT IYT+++ +     + ++YD
Sbjct: 239 LGQPLHPHTLRHSAASHLLQSSGDLRAVQEYLGHAGIGTTAIYTHMDYQQ----LAQVYD 294

Query: 316 QTHPSITQKDKK 327
           Q HP   + D+ 
Sbjct: 295 QAHPRSRRGDQD 306


>gi|320528392|ref|ZP_08029554.1| phage integrase, SAM-like domain protein [Solobacterium moorei
           F0204]
 gi|320131306|gb|EFW23874.1| phage integrase, SAM-like domain protein [Solobacterium moorei
           F0204]
          Length = 308

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 89/311 (28%), Positives = 146/311 (46%), Gaps = 16/311 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ++      +  N++I  G SK T+ SY  D +Q++ FL     ++  I   +++    I 
Sbjct: 2   KIHDAFIEYFTNIKINEGKSKRTVSSYTNDLKQYMQFL-----DEQGITNTKKIKPELIE 56

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            FI+ +   K    SL R  + I+SF +++           LN++  K   +LP      
Sbjct: 57  EFIANQSEYKAS-TSLARMTAAIRSFHQFMTMMH-DEPDPSLNLQVHKGPKTLPIYCTVD 114

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L+ +       +T   D  +  +L  +Y CGLR+SE  +LT   +  D   +R+ G
Sbjct: 115 EIKRLMQSF-----DDTNIQDNLDHTLLETIYSCGLRVSEICNLTINRVDLDTGRIRVLG 169

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KGDK RIVP+       + +Y  +   +L        F    G+ +     +  +++   
Sbjct: 170 KGDKERIVPIPKGSIPLLKQYISITRVNLIQKKTNIFFLNRFGRKITSKYVELLLQRKCV 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            L      T H LRHS+ATH+L  G DLRSIQ ILGH  + TT+IYT+V +K   D    
Sbjct: 230 ELDFKKHITPHKLRHSYATHMLQGGADLRSIQEILGHSNIQTTEIYTHVQNKQLFDA--- 286

Query: 313 IYDQTHPSITQ 323
            Y++ +P  +Q
Sbjct: 287 -YNKFNPLASQ 296


>gi|212695321|ref|ZP_03303449.1| hypothetical protein BACDOR_04866 [Bacteroides dorei DSM 17855]
 gi|212662231|gb|EEB22805.1| hypothetical protein BACDOR_04866 [Bacteroides dorei DSM 17855]
          Length = 293

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 74/304 (24%), Positives = 139/304 (45%), Gaps = 15/304 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L  L  ER  S+ T+ SY  D  +F  ++    E          +    +R ++   
Sbjct: 4   DSFLDYLRFERNYSEKTIVSYGIDLIKFEEYIRGKDEN----VDFTTVDADLVRGWVMNL 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S+ R LS ++SF ++L K+ +  E  +L +   K    LP  L E++   L+
Sbjct: 60  IEDGYTSASVNRKLSSLRSFYRFLLKKGVIGEDPMLKIIGPKNKKPLPVFLKEREMDRLL 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D        +  +   R+  +L + Y  G+R+SE + L   ++    S +++ GK +K R
Sbjct: 120 D----DVPFKEDFTGCRDRMVLEMFYATGMRLSELIGLNDVDVDFSASLIKVTGKRNKQR 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR-QLRRYLGLP 257
           ++P    +R+A+  Y  +    L        F    GK + PG     ++  L + + L 
Sbjct: 176 LIPFGEELRRAMFVYLKIRNEVLPEKA-GAFFVLKNGKRMYPGKVYLLVKRNLSKVVSLK 234

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FAT +L+N  +L +++ +LGH  L+T    T + +    + + ++Y+Q 
Sbjct: 235 KR-SPHVLRHTFATAMLNNEAELGAVKELLGHSSLTT----TEIYTHTTFEELKKVYEQA 289

Query: 318 HPSI 321
           HP  
Sbjct: 290 HPRA 293


>gi|126663343|ref|ZP_01734341.1| integrase [Flavobacteria bacterium BAL38]
 gi|126625001|gb|EAZ95691.1| integrase [Flavobacteria bacterium BAL38]
          Length = 295

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 145/305 (47%), Gaps = 14/305 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q +   L  E+  S LT+++Y  D + F  +L   +       ++ ++ Y  IR +I  
Sbjct: 5   LQAYQDYLVKEKNYSPLTVRAYLDDIQSFQEYLLGQSI------SLEEVVYPNIRNWIVT 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I   S+ R +S +KS+ K+L K K  + + +L  ++LK +  +    +EK+ L +
Sbjct: 59  LVEHNISTTSVNRKISALKSYYKFLLKVKQISVNPLLKHKSLKTAKKVQIPFSEKELLDV 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                    +   +   RN  I+ L Y  G+R +E ++L   ++ + Q T+R+ GK +K 
Sbjct: 119 FSEN----EYADDFEGIRNRFIIELFYTTGIRRAELINLNLNSVSEIQKTIRVIGKRNKE 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RI+P+L        +Y  L      ++    L     G  ++     R I      +   
Sbjct: 175 RIIPVLDCTLNLYKKYKSLRNGLELISDNEMLILSKTGNKVSESFVYRLINDYFSTVSKK 234

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRHSFATHLL+NG DL S++ +LGH  LS+TQIYT+    +    + ++Y + 
Sbjct: 235 EKKSPHVLRHSFATHLLNNGADLNSVKELLGHASLSSTQIYTH----SSLAELKKVYQEA 290

Query: 318 HPSIT 322
           HP   
Sbjct: 291 HPRNK 295


>gi|257068693|ref|YP_003154948.1| tyrosine recombinase XerD subunit [Brachybacterium faecium DSM
           4810]
 gi|256559511|gb|ACU85358.1| tyrosine recombinase XerD subunit [Brachybacterium faecium DSM
           4810]
          Length = 332

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 93/342 (27%), Positives = 146/342 (42%), Gaps = 31/342 (9%)

Query: 1   MEGNNLPEIVSFELLKE-----RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE 55
           M     P+    + L+       + +L +L IERGLS  TL +Y  D R++L  LA    
Sbjct: 1   MTPGGAPDPAPEQALRPADERILEQYLSHLRIERGLSANTLAAYRRDLRRYLAELARRDI 60

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIG--------DRSLKRSLSGIKSFLKYLKKRKI 107
                     +   ++  ++   RT   G              ++ G+ SFL    +R  
Sbjct: 61  ------DATAVDPQQLGRWLQSLRTGADGGSVLSASSAARSLAAVRGLHSFLD--AERVS 112

Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNV-LLHTSHETKWIDARNSAILYLLYGC 166
           ++      + +      LP  L   Q   L++      T  +      R+ A+L +LYG 
Sbjct: 113 SSGDPARLVPSPALPRRLPHPLAIAQVEALIEAAGRPSTGRDATARALRDRALLEVLYGL 172

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G RISEA  L   +I   +    ++GKGDK R+VP+     +A+  Y       L     
Sbjct: 173 GARISEATGLDVDDIDAQERAAVLRGKGDKHRVVPVGRFALEALEAYLTRGRPVLAARGT 232

Query: 227 L--PLFRGIRGKPLNPGVFQRYIRQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLR 281
               +F G RG  L      + +++         LP   + HTLRHS+ATHLL  G D+R
Sbjct: 233 GTPAIFLGSRGTRLTRQAAWQVVQRAADAAELSDLPEPISPHTLRHSYATHLLHGGADVR 292

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
           ++Q +LGH  ++TTQ+YT V      D + E +   HP   +
Sbjct: 293 AVQELLGHASVTTTQLYTQVT----VDSLRETHAGAHPRARR 330


>gi|332299940|ref|YP_004441861.1| Tyrosine recombinase xerC [Porphyromonas asaccharolytica DSM 20707]
 gi|332177003|gb|AEE12693.1| Tyrosine recombinase xerC [Porphyromonas asaccharolytica DSM 20707]
          Length = 407

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 152/314 (48%), Gaps = 15/314 (4%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +++ EL +  + +++ L +ER  S LTL +Y      ++        ++           
Sbjct: 5   MLTEELEQTLEAFIEYLRLERNASPLTLNTYRPAITSYMECALELASDE---WQPSDADR 61

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R +I ++   ++   ++ ++LS +KSF KYL+ R +   +    +R  K+ ++LP  
Sbjct: 62  DLVRNWIMQQMDDELTSTTVNKNLSAVKSFYKYLQLRGVVDNNPTRYLRGPKREHTLPSF 121

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L + Q    ++ +    +    ++  RN  I+  +Y  GLR +E  SL  Q +     +L
Sbjct: 122 LTQAQIEEALETI---PTDPEDFLAVRNRLIIETIYQTGLRRAEVASLETQQVDLASMSL 178

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R+ GKG K RIVP   ++++ +  Y  L   +  +      F  ++ +PL+     + + 
Sbjct: 179 RVVGKGRKERIVPFGEALKEQMKAYLTLK--EQKVGQSRYFFVTLKCRPLSGADVYQVVH 236

Query: 249 QLRRYL-GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +    + GLP    AHTLRHSFAT +L+ G  + SI+ +LGH  L TT  YT+ + +   
Sbjct: 237 KALDIVPGLPRR-GAHTLRHSFATEMLNAGAPITSIKELLGHSNLETTTRYTHTSFEQ-- 293

Query: 308 DWMMEIYDQTHPSI 321
             + ++Y   HP  
Sbjct: 294 --LKQLY-HAHPRA 304


>gi|332287662|ref|YP_004422563.1| site-specific tyrosine recombinase xerD [Chlamydophila psittaci
           6BC]
 gi|325506468|gb|ADZ18106.1| site-specific tyrosine recombinase xerD [Chlamydophila psittaci
           6BC]
 gi|328914913|gb|AEB55746.1| integrase/recombinase XerD [Chlamydophila psittaci 6BC]
          Length = 299

 Score =  216 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 95/305 (31%), Positives = 151/305 (49%), Gaps = 21/305 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   L ++RGLS  ++ +Y  D   FL   A        I +I ++S   +  F+ +
Sbjct: 11  LEQFTLFLSVDRGLSCNSISAYIQDITLFLKINA--------ITSIAEISQDSVHLFVDQ 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +K  + +L R L  +K F ++LK+ K+     +  + + K    LP  L  K+  TL
Sbjct: 63  LHKRKEAEATLARRLIALKVFFRFLKEAKLLEHPPL--IEHPKIWKRLPTVLTPKEVDTL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +      T+  +  I  R++AIL+ LY  G+R+SE   L   ++ DD   LR+ GKG K 
Sbjct: 121 LAIPKKTTT--SSMISTRDTAILHTLYSTGIRVSELCGLHIGDVSDD--FLRVTGKGSKT 176

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLN--IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R+VPL     +AI  Y      +L      +  LF  IRG+ L      + I    + + 
Sbjct: 177 RLVPLGKLASEAIDAYLCPFRENLQKKQPEEHHLFLSIRGRKLERSCVWKRIHYYAKQVT 236

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H+LRH+FATHLL N  DLR IQ +LGH R+++T++YT+V      D +ME + 
Sbjct: 237 -HKRVSPHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHV----AADTLMENFL 291

Query: 316 QTHPS 320
             HP 
Sbjct: 292 SYHPR 296


>gi|150025257|ref|YP_001296083.1| tyrosine recombinase XerC [Flavobacterium psychrophilum JIP02/86]
 gi|149771798|emb|CAL43272.1| Tyrosine recombinase XerC [Flavobacterium psychrophilum JIP02/86]
          Length = 298

 Score =  216 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 87/306 (28%), Positives = 144/306 (47%), Gaps = 12/306 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +Q +   L  E+  S LT  +Y  D + F  FL      K     + ++SYT IR++I  
Sbjct: 5   QQKFQDYLLKEKNYSPLTALAYGKDLQFFQTFLEI----KFDNTPLEEVSYTLIRSWIVS 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
               ++ + S+ R ++ +K+F K+L K K    + +   + LK    +    +E +    
Sbjct: 61  MVDAEMSNTSVNRKIASLKAFYKFLLKTKQIEINPLSKHKALKTPKKIQIPFSEAE---- 116

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D VL    ++  +   R+  I+ L Y  G+R SE +SL   N      T+++ GK +K 
Sbjct: 117 LDTVLTQIQYKAGFEGMRDKLIIDLFYTTGIRRSELISLQISNTNLVAGTIKVIGKRNKE 176

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RI+PLLP + K I  Y         +  +  L     G   N     R I      +   
Sbjct: 177 RIIPLLPVIIKQIKVYLAERKQLSLIVAKENLILLSNGNKANETFVYRLINDYFSNVSEK 236

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           +  + H LRH+FATH+L++G DL SI+ +LGH  L++TQ+YTN    +    +  +Y   
Sbjct: 237 VKKSPHMLRHTFATHMLNHGADLNSIKELLGHSSLASTQVYTN----SSLAELKNVYQNA 292

Query: 318 HPSITQ 323
           HP   +
Sbjct: 293 HPRNQK 298


>gi|332981969|ref|YP_004463410.1| integrase family protein [Mahella australiensis 50-1 BON]
 gi|332699647|gb|AEE96588.1| integrase family protein [Mahella australiensis 50-1 BON]
          Length = 322

 Score =  216 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 92/327 (28%), Positives = 156/327 (47%), Gaps = 35/327 (10%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE----- 55
           M+ N+ P+I++        ++L  LE  +G S  T++ Y  D R F  FL          
Sbjct: 1   MQINDTPDIIN--------DFLIYLENVQGKSPNTVKEYFYDLRTFFRFLKIRRGMVDES 52

Query: 56  --------EKITIQTIRQLSYTEIRAFISKRRTQKIG-DRSLKRSLSGIKSFLKYLKKR- 105
                     I +  ++ +  +++ A+IS    QK    RS  R ++ I++F KYL  + 
Sbjct: 53  EDIRSIDIRDIDLSIVKSVQLSDLYAYISFLSNQKHNNARSRARKVASIRTFFKYLTNKA 112

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
           K+ + +  + + + K  +  P  L+ +++  L+ +V             R+ AIL L   
Sbjct: 113 KLLSVNPAIELESPKVGSRNPVYLSLEESRELLASV-------DGPFKERDYAILTLFLN 165

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           CGLR+SE + +   +I +D  TLR+ GKG+K R V L  +   AI  Y    P D  +  
Sbjct: 166 CGLRLSELVGINIGDIKED--TLRVIGKGNKERTVYLNEACLNAIETYLKTRPHD-GVKD 222

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLRSI 283
           +  LF     K ++P   Q  +++     GL     + H LRH+ AT +   G  D+R++
Sbjct: 223 REALFLSKLKKRISPKTVQYIVKKYISNAGLDSTKYSTHKLRHTAATLMYKYGDIDIRTL 282

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWM 310
           Q +LGH  +STTQIYT+V++      +
Sbjct: 283 QQLLGHENISTTQIYTHVDNDMVRHAV 309


>gi|158313594|ref|YP_001506102.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158108999|gb|ABW11196.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 383

 Score =  216 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 91/323 (28%), Positives = 148/323 (45%), Gaps = 25/323 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L +++ ERGL++ ++ +Y  D R++   LA        I ++  +   +I  F + 
Sbjct: 26  IERYLDHVDGERGLARNSVLAYRRDLRRYREHLAA-----GGITSLAAVGEAQIAEFAAA 80

Query: 78  RRTQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            R        +   S+ R L  ++S  ++  +    +E     +R       LPRAL   
Sbjct: 81  LREGDETHPPLAPASVARMLVAVRSLHRFAAQEGDVSEDVARPVRPPVPPRRLPRALTVD 140

Query: 133 QALTLVDNVLLHTSHETKWIDA---------RNSAILYLLYGCGLRISEALSLTPQNIMD 183
           Q   ++   +       +             R++A+L LLYG G RISEA+ L   ++  
Sbjct: 141 QVSAVIAAAVAGGPEYAEVSGGDPAELARRLRSAALLELLYGTGARISEAVGLDLDDLDL 200

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGV 242
           D+S +R++GKG + R+VPL      A+  Y       L        +F   RG  L+   
Sbjct: 201 DRSAVRLRGKGGRDRVVPLGRYAVTALERYLRRGRPHLVTECSGTAVFVSRRGNRLSRQS 260

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               +R      G+P   + H LRHSFATHLL  G D+R +Q +LGH  +STTQIYT V 
Sbjct: 261 AWSALRAAANAAGVP-GASPHVLRHSFATHLLDGGADVRVVQELLGHASVSTTQIYTLVT 319

Query: 303 SKNGGDWMMEIYDQTHPSITQKD 325
                D + E+Y  +HP   ++ 
Sbjct: 320 ----MDHLREVYASSHPRALRRP 338


>gi|300773739|ref|ZP_07083608.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300759910|gb|EFK56737.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 293

 Score =  216 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 78/304 (25%), Positives = 144/304 (47%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +Q +L  L  E+  S  T+++Y  +   F  FL      +       +  +  IR ++S 
Sbjct: 3   QQRFLNFLRFEKRYSNHTIEAYTHELTIFFTFLQDQGIPE------EEADHRVIRFYLSH 56

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S+ RS+S ++++ K+L++  +T ++ +  ++ LK    LP  + + + + L
Sbjct: 57  LMEEGRQATSVNRSISALRTYYKFLQRESLTDQNPLTLIKALKTPKKLPSVMEKDKMVGL 116

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D +         + D R+  +L LL+G G+R++E L +   +I      + I GK +K 
Sbjct: 117 LDQMEGAV---DSFTDERDYLVLELLFGTGIRLTELLQIKITDIDFYNKNILILGKRNKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VP+  ++ + +  Y          N    L     GK   P +  R + +    +   
Sbjct: 174 RLVPVNHTLLEKLKIYIQQLDNQKIDNKTAFLIVTKEGKQAYPKMIYRIVHRYLSLISTQ 233

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FAT LL NG DL +I+ +LGH  L+ TQ+YT+    N  + +  +Y Q 
Sbjct: 234 RKKSPHVLRHTFATALLDNGADLNAIKELLGHAGLAATQVYTH----NSVERLKSVYKQA 289

Query: 318 HPSI 321
           HP  
Sbjct: 290 HPKA 293


>gi|325673461|ref|ZP_08153152.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707]
 gi|325555482|gb|EGD25153.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707]
          Length = 313

 Score =  216 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 89/318 (27%), Positives = 144/318 (45%), Gaps = 11/318 (3%)

Query: 6   LPEIVSFELLK-ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           LP+     LL+    ++ + L +ERG S+ T+++Y  D    L FL     + +    + 
Sbjct: 5   LPDSQLPPLLRMHLDDYDEYLRLERGRSEHTVRAYRADVAGLLGFLCRDRPDAV----LA 60

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            L    +RA+++ +        +L R  S  K F  + ++         + +   K   +
Sbjct: 61  DLDLRVLRAWLAAQAAAGTARTTLARRTSSAKGFTAWAERTGRMPVDPGIRLVAPKAHRT 120

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L ++QA   +       + E   +  R+  I+ LLY  G+R+ E   L   +I  D
Sbjct: 121 LPPVLRQEQAAEAMVAAESGAAQE-DPVAVRDRLIVELLYSTGIRVGELCGLDLGDIDHD 179

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVF 243
           +  LR+ GKGDK R+VP       AI  +      +L N      L  G RG  L+    
Sbjct: 180 RRVLRVLGKGDKERVVPFGRPAEDAIGAWLRSGRPELVNERSGDALLLGRRGGRLDQRQA 239

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +  +  + + +        H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V+ 
Sbjct: 240 RAVVHDVVQAVPGAPDLAPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVSV 299

Query: 304 KNGGDWMMEIYDQTHPSI 321
                 +  ++DQ HP  
Sbjct: 300 AR----LRAVHDQAHPRA 313


>gi|291527468|emb|CBK93054.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 308

 Score =  216 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 84/313 (26%), Positives = 146/313 (46%), Gaps = 21/313 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L    +N+++    ++ L   TL++Y+ D RQF         E+I+I  I  ++ + + +
Sbjct: 4   LETRIKNYIEYCTAQKRLDTKTLKAYKIDLRQF--------SEQISITEIEYITTSVLES 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEK 132
           +I+    Q    +S+KR ++ IK+F  YL+ + I   +    ++   ++   LP+ +  K
Sbjct: 56  YITNLHQQ-YSPKSVKRKIASIKAFFHYLEYKDIIILNPFNKLQIKFREPVILPKTIPLK 114

Query: 133 QALTLVDNVLLH----TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
               L +         TS   K    R+ A+L LL+  G+RISE  S+  QN+    + +
Sbjct: 115 TLEVLFNAAYAKYHKTTSPCQKRKTLRDIAVLELLFATGIRISELCSILLQNMDLQNNII 174

Query: 189 RIQGKGDKIRIVPLL-PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
            I GKG K R++ +  P+V   + +YY      ++       F    G  L+    +  I
Sbjct: 175 LIHGKGSKERLIHICDPNVLNILNQYYTEYYSQISA--CGYFFVNNTGNRLSDQSVRDMI 232

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +  R   +    T H  RH+FAT LL    D+R IQ++LGH  ++ T+IYT+V      
Sbjct: 233 NKYCRIADIDYHITPHMFRHTFATQLLEENVDIRYIQTMLGHSSINVTEIYTHVTISKQK 292

Query: 308 DWMMEIYDQTHPS 320
           D +       HP 
Sbjct: 293 DILA----SKHPR 301


>gi|218282387|ref|ZP_03488669.1| hypothetical protein EUBIFOR_01251 [Eubacterium biforme DSM 3989]
 gi|218216673|gb|EEC90211.1| hypothetical protein EUBIFOR_01251 [Eubacterium biforme DSM 3989]
          Length = 300

 Score =  216 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 92/315 (29%), Positives = 142/315 (45%), Gaps = 16/315 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL    +++   L + +  SK T+QSY  D   +L FL     +   I     +S  +I 
Sbjct: 2   ELKDAFEDYHLYLSVVQRKSKKTVQSYLHDIDVYLDFL-----KDRKISKCENISVLDIE 56

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           AF+       +   SL R ++ I SF   +       +   L +  +K S  LP  L+  
Sbjct: 57  AFLDFYAEDHVA-SSLNRMIASIHSFHLQISTMHPEIKDVSLLIHGMKSSKHLPVYLSVD 115

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   +       +S +   ID  N  IL +LY CGLR+SE   L   ++   +  L+++G
Sbjct: 116 EVKKVF------SSFQDNEIDQYNKTILVVLYSCGLRVSELCDLKLNDVHLTEQILKVKG 169

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KGDK RI+P+       +  Y D   F  ++      F    G           I+Q   
Sbjct: 170 KGDKERIIPISSYCVSQMKYYLDSIRFVWDVKNVSYFFVNRLGHICTRQYVHLMIKQKVN 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            L L    +AH+ RHSFATHLL    DLR +Q +LGH  +STTQIYT++  K     +  
Sbjct: 230 ELNLNPKISAHSFRHSFATHLLDGDADLRIVQELLGHSNISTTQIYTHIQDKR----LSS 285

Query: 313 IYDQTHPSITQKDKK 327
           +YD+    I +  ++
Sbjct: 286 VYDRCFQKIEKSKEE 300


>gi|269965093|ref|ZP_06179258.1| tyrosine recombinase XerC [Vibrio alginolyticus 40B]
 gi|269830396|gb|EEZ84621.1| tyrosine recombinase XerC [Vibrio alginolyticus 40B]
          Length = 229

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 123/238 (51%), Gaps = 11/238 (4%)

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           +   LS ++SF  +L  R   + +    +   +K   LP+ L+  +   L++       +
Sbjct: 1   MATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVSQLLEV------N 54

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
           E   +  R+ A++ L+YG GLR++E + +  +++      LR+ GKGDK R VP      
Sbjct: 55  EDDPLAVRDRAMMELMYGAGLRLAELVGVDVRDVQLRSGELRVIGKGDKERKVPFSGMAT 114

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + + ++  +   DL    +  LF    G  ++    Q+ + +  +   +    + H LRH
Sbjct: 115 EWVGKWLRVR-GDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISPHKLRH 173

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           SFATH+L +  +LR++Q +LGH  +STTQIYT+++ ++    + + YDQ HP   +K+
Sbjct: 174 SFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQH----LAQAYDQAHPRARKKN 227


>gi|291550597|emb|CBL26859.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 306

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 74/309 (23%), Positives = 147/309 (47%), Gaps = 21/309 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           ++ + +L+  E  + L   TL++Y  D RQF      YT E I  +        +I  +I
Sbjct: 5   EQVEKYLEYCEFRKELDWNTLKAYRIDLRQFFE----YTMEDIPGK-------EKIEDYI 53

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQA 134
           ++   +K   +++KR ++ +K++  +L++R+I +++    ++   K+S  LPR +  ++ 
Sbjct: 54  TELH-KKFKQKTIKRKIASVKAYYNFLEEREIISDNPFRKIKVGFKESIILPRIIPREEI 112

Query: 135 LTLVDNVLLHTSHET---KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
             L++ +    +           R+ A++  L+  G R+ E  ++   ++  +   +R+ 
Sbjct: 113 EELLNFMYAQENKSNVKVHKFWLRDIAVIETLFATGARVYEISNIREDSVNLNTGLIRLM 172

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG K R + +  S    +L+ Y        +      F   RG        +  +++  
Sbjct: 173 GKGGKERYIQIASSEILDLLKNYYKEN-AKEIKQSGFFFVNNRGCRYTEQSIRLMLKKYT 231

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +  G+  + T H  RHSFAT+L+  G D+  +Q ILGH  + TTQIY +V +K   + + 
Sbjct: 232 KLAGIERNITPHMFRHSFATYLIEEGVDISCVQQILGHSSIKTTQIYIHVAAKKQAEILR 291

Query: 312 EIYDQTHPS 320
           E    +HP 
Sbjct: 292 E----SHPR 296


>gi|166154210|ref|YP_001654328.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           434/Bu]
 gi|166155085|ref|YP_001653340.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335456|ref|ZP_07223700.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           L2tet1]
 gi|165930198|emb|CAP03683.1| integrase/recombinase [Chlamydia trachomatis 434/Bu]
 gi|165931073|emb|CAP06637.1| integrase/recombinase [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 300

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 93/307 (30%), Positives = 159/307 (51%), Gaps = 20/307 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + +   L ++RG+S L++Q+Y  D   FL        ++ +I+   +++   +  F+
Sbjct: 10  RLIEQFTIFLSVDRGISPLSVQAYCQDVLLFL--------QRASIEATDRINQESVFLFV 61

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            K    K  + +L R L  +K F  +LK  K+  +     + + K    LP  L+ ++  
Sbjct: 62  EKCHKAKESETTLARRLIALKVFFHFLKDVKMLDQQPF--IEHPKIWKRLPSILSTEEVN 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +L+D  L +  +    I +R++AILY  Y  G+R+SE   L   +I DD   +R+ GKG 
Sbjct: 120 SLLDQPL-NIPNLDTHIASRDAAILYTFYATGIRVSELCDLCIGDISDD--FIRVTGKGR 176

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLN--IQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R+VP+    ++AI  Y      +L      +  +F  IRGK L+     + I    + 
Sbjct: 177 KTRLVPISIKAKQAIDAYLSSFRDELQKKNPSEEHVFLSIRGKKLDRSCVWKRITFYAKL 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +      + H+LRH+FATHLL+N  DLR IQ +LGH R+S+T+IYT+V S++    ++E 
Sbjct: 237 VT-TKRISPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASES----LIEK 291

Query: 314 YDQTHPS 320
           +   HP 
Sbjct: 292 FHTYHPR 298


>gi|161869695|ref|YP_001598862.1| integrase/recombinase [Neisseria meningitidis 053442]
 gi|161595248|gb|ABX72908.1| integrase/recombinase [Neisseria meningitidis 053442]
          Length = 291

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 78/300 (26%), Positives = 133/300 (44%), Gaps = 20/300 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L ++R L++ TL  Y  D  +    L+               +   +          
Sbjct: 10  LETLWLDRRLNQNTLNGYRRDLEKIARRLSQSGRTLKDADEADLAAAVYV---------D 60

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                S  R+LS  K    ++++  I T++    ++  K   ++P  + E+Q   L+   
Sbjct: 61  GEQRSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLL--- 117

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
              T         R+ A+L L+Y  GLR+SEA+ L   N+  D+  +   GKGDK R+VP
Sbjct: 118 --ATPDTDTPHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVP 175

Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +       +  YY    P  L       LF   +   ++  +    +++     G+    
Sbjct: 176 MGQESAYWVERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYAGRAGIG-HI 234

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H+LRH+FATHL+ +G DLR +Q +LGH  L+TTQIYT+V +     W+  +  + H  
Sbjct: 235 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVAN----VWLQGVVKEHHSR 290


>gi|239827068|ref|YP_002949692.1| integrase [Geobacillus sp. WCH70]
 gi|239807361|gb|ACS24426.1| integrase family protein [Geobacillus sp. WCH70]
          Length = 301

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 143/303 (47%), Gaps = 14/303 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
             +    ++  L+IE+  S  T+  Y  D R F  FL  +         +  ++ T +R 
Sbjct: 3   FRQAIDEFVLYLQIEKNYSLNTVDGYAYDLRCFENFLVQHGYS----VQLNNITKTHVRR 58

Query: 74  FISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           FI  + T + +  R++ R +S +KSF KY  K  +     ++ +   K  + LP  ++  
Sbjct: 59  FIQHQITKENVKPRTIYRRISCLKSFSKYCVKENLIDNDFMIGIDTPKTDSKLPTYMSLS 118

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L          +   +  RN  +  LL   G+R SE + LT + I    +T+RI G
Sbjct: 119 ELRKLFHF----LEQDNSRMAMRNHLLFKLLATTGMRRSEIVELTWEQIDLSNNTIRIYG 174

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R++PL P V   +++ Y     +  L+   P+F    GK LNP    +  + + +
Sbjct: 175 KGKKERLLPLHPMVV-PLMKSYMESLEEYQLHPSQPVFLNKNGKKLNPRGLHKIFKDILQ 233

Query: 253 YLGLPL-STTAHTLRHSFATHLLS---NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
             GLP    + H LRH+FAT L+       DLR++Q +LGH  L TTQ+YT+V+ +    
Sbjct: 234 KAGLPPQRFSLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVDFEQKKK 293

Query: 309 WMM 311
            + 
Sbjct: 294 AIE 296


>gi|121634549|ref|YP_974794.1| putative integrase/recombinase [Neisseria meningitidis FAM18]
 gi|120866255|emb|CAM09996.1| putative integrase/recombinase [Neisseria meningitidis FAM18]
 gi|254671814|emb|CBA03927.1| site-specific recombinase [Neisseria meningitidis alpha275]
 gi|316983737|gb|EFV62718.1| tyrosine recombinase XerD [Neisseria meningitidis H44/76]
 gi|325197973|gb|ADY93429.1| tyrosine recombinase XerD [Neisseria meningitidis G2136]
 gi|325200561|gb|ADY96016.1| tyrosine recombinase XerD [Neisseria meningitidis H44/76]
          Length = 291

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 132/300 (44%), Gaps = 20/300 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L ++R L++ TL  Y  D  +    L+               +   +          
Sbjct: 10  LETLWLDRRLNQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYV---------D 60

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                S  R+LS  K    ++++  I T++    ++  K   ++P  + E+Q   L+   
Sbjct: 61  GEQRSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLL--- 117

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
                        R+ A+L L+Y  GLR+SEA+ L   N+  D+  +   GKGDK R+VP
Sbjct: 118 --AAPDTDTPHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVP 175

Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +       +  YY    P  L       LF   +   ++  +    +++     G+    
Sbjct: 176 MGQESAYWVGRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIG-HI 234

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H+LRH+FATHL+ +G DLR +Q +LGH  L+TTQIYT+V +     W+  +  + H  
Sbjct: 235 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVAN----VWLQGVVKEHHSR 290


>gi|297748991|gb|ADI51537.1| Integrase/recombinase (XerC/CodV family) [Chlamydia trachomatis
           D-EC]
 gi|297749871|gb|ADI52549.1| Integrase/recombinase (XerC/CodV family) [Chlamydia trachomatis
           D-LC]
          Length = 308

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 93/307 (30%), Positives = 159/307 (51%), Gaps = 20/307 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + +   L ++RG+S L++Q+Y  D   FL        ++ +I+   +++   +  F+
Sbjct: 18  RLIEQFTIFLSVDRGISPLSVQAYCQDVLLFL--------QRASIEATDRINQESVFLFV 69

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            K    K  + +L R L  +K F  +LK  K+  +     + + K    LP  L+ ++  
Sbjct: 70  EKCHKAKESETTLARRLIALKVFFHFLKDAKMLDQQPF--IEHPKIWKRLPSILSTEEVN 127

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +L+D  L +  +    I +R++AILY  Y  G+R+SE   L   +I DD   +R+ GKG 
Sbjct: 128 SLLDQPL-NIPNLDTHIASRDAAILYTFYATGIRVSELCDLCIGDISDD--FIRVTGKGR 184

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLN--IQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R+VP+    ++AI  Y      +L      +  +F  IRGK L+     + I    + 
Sbjct: 185 KTRLVPISIKAKQAIDAYLSSFRDELQKKNPSEEHVFLSIRGKKLDRSCVWKRITFYAKL 244

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +      + H+LRH+FATHLL+N  DLR IQ +LGH R+S+T+IYT+V S++    ++E 
Sbjct: 245 VT-TKRISPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASES----LIEK 299

Query: 314 YDQTHPS 320
           +   HP 
Sbjct: 300 FHTYHPR 306


>gi|138895282|ref|YP_001125735.1| integrase/recombinase [Geobacillus thermodenitrificans NG80-2]
 gi|134266795|gb|ABO66990.1| Integrase/recombinase [Geobacillus thermodenitrificans NG80-2]
          Length = 301

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 143/303 (47%), Gaps = 14/303 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
             +    ++  L+IE+  S  T+  Y  D R F  FL  +         +  ++ T +R 
Sbjct: 3   FRQAIDEFVLYLQIEKNYSLNTVDGYAYDLRCFENFLVQHGYS----VQLNSITKTHVRR 58

Query: 74  FISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           FI  + T + +  R++ R +S +KSF KY  K  +     ++ +   K  + LP  ++  
Sbjct: 59  FIQHQITKENVKPRTIYRRISCLKSFSKYCVKENLIDNDFMIGIDTPKTDSKLPTYMSLS 118

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L          +   +  RN  +  LL   G+R SE + LT + I    +T+RI G
Sbjct: 119 ELRKLFHF----LEQDNSRMAMRNHLLFKLLATTGMRRSEIVELTWEQIDLSNNTIRIYG 174

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R++PL P V   +++ Y     +  L+   P+F    GK LNP    +  + + +
Sbjct: 175 KGKKERLLPLHPMVV-PLMKSYMESLEEYQLHPSQPVFLNKNGKKLNPRGLHKIFKDILQ 233

Query: 253 YLGLPL-STTAHTLRHSFATHLLS---NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
             GLP    + H LRH+FAT L+       DLR++Q +LGH  L TTQ+YT+V+ +    
Sbjct: 234 KAGLPPQRFSLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVDFEQKKK 293

Query: 309 WMM 311
            + 
Sbjct: 294 AIE 296


>gi|15605600|ref|NP_220386.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           D/UW-3/CX]
 gi|255311708|ref|ZP_05354278.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           6276]
 gi|255318009|ref|ZP_05359255.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           6276s]
 gi|34222769|sp|O84872|XERD_CHLTR RecName: Full=Tyrosine recombinase xerD
 gi|3329338|gb|AAC68462.1| Integrase/recombinase [Chlamydia trachomatis D/UW-3/CX]
 gi|296436423|gb|ADH18597.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           G/9768]
 gi|296437354|gb|ADH19524.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           G/11222]
 gi|296438282|gb|ADH20443.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           G/11074]
 gi|297140783|gb|ADH97541.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           G/9301]
          Length = 300

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 93/307 (30%), Positives = 159/307 (51%), Gaps = 20/307 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + +   L ++RG+S L++Q+Y  D   FL        ++ +I+   +++   +  F+
Sbjct: 10  RLIEQFTIFLSVDRGISPLSVQAYCQDVLLFL--------QRASIEATDRINQESVFLFV 61

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            K    K  + +L R L  +K F  +LK  K+  +     + + K    LP  L+ ++  
Sbjct: 62  EKCHKAKESETTLARRLIALKVFFHFLKDAKMLDQQPF--IEHPKIWKRLPSILSTEEVN 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +L+D  L +  +    I +R++AILY  Y  G+R+SE   L   +I DD   +R+ GKG 
Sbjct: 120 SLLDQPL-NIPNLDTHIASRDAAILYTFYATGIRVSELCDLCIGDISDD--FIRVTGKGR 176

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLN--IQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R+VP+    ++AI  Y      +L      +  +F  IRGK L+     + I    + 
Sbjct: 177 KTRLVPISIKAKQAIDAYLSSFRDELQKKNPSEEHVFLSIRGKKLDRSCVWKRITFYAKL 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +      + H+LRH+FATHLL+N  DLR IQ +LGH R+S+T+IYT+V S++    ++E 
Sbjct: 237 VT-TKRISPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASES----LIEK 291

Query: 314 YDQTHPS 320
           +   HP 
Sbjct: 292 FHTYHPR 298


>gi|282164156|ref|YP_003356541.1| putative site-specific recombinase [Methanocella paludicola SANAE]
 gi|282156470|dbj|BAI61558.1| putative site-specific recombinase [Methanocella paludicola SANAE]
          Length = 272

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 89/303 (29%), Positives = 149/303 (49%), Gaps = 38/303 (12%)

Query: 20  NWLQNLEIERGLS--KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +++Q    E+ LS    T++ Y      F  F +         + + Q++  EI  +++ 
Sbjct: 2   DYIQIFLDEKRLSSSPNTIKQYGLILHNFQEFCS---------KPLDQVNRHEIIRYLNH 52

Query: 78  RR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               Q      +   +S IKSF  +L + +  T +    + ++K     P  L + +   
Sbjct: 53  LMFEQNRSKAYVSNIMSIIKSFYSFLVENEYITANPAKGISSVKIDKKAPIYLTQDEMRA 112

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L++            +D R++ I+ +LY  G+R+SE +++  Q+I  D++T+++ GKG K
Sbjct: 113 LIE----------TALDPRDNLIVKMLYATGVRVSELVNIKKQDIDLDRNTIKVFGKGAK 162

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            RIV L+P V KA LE Y     +           G +   LN    +R I+ L    G+
Sbjct: 163 ERIV-LVPDVLKAQLETYCAGFPE-----------GQKLFDLNIRTVERDIKALAVRAGI 210

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               T H LRHSFATH+L NGG++ +IQ +LGH  L+TTQIYT+ +     D + ++Y  
Sbjct: 211 NKKVTPHKLRHSFATHMLQNGGNVVAIQKLLGHTSLNTTQIYTHYS----VDELKDMYAH 266

Query: 317 THP 319
           THP
Sbjct: 267 THP 269


>gi|288559967|ref|YP_003423453.1| tyrosine recombinase XerC [Methanobrevibacter ruminantium M1]
 gi|288542677|gb|ADC46561.1| tyrosine recombinase XerC [Methanobrevibacter ruminantium M1]
          Length = 326

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 96/318 (30%), Positives = 153/318 (48%), Gaps = 24/318 (7%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
           G+ L     F+  +  +N++  +EI R  S+ T+++Y    R  + +++         + 
Sbjct: 28  GDKLHIKDVFDFEEMLENYIIEMEI-RNYSENTVKTYSSIIRSMIDYMSSEEGVYDGRKF 86

Query: 63  IRQLSYTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           +        + +I   +  Q +    +  +    K FL++           + +++N K+
Sbjct: 87  L-----ACFKKYIRDLKKDQDVSQNYIYLNTVVCKKFLEFN------DIYFLEDVQNPKR 135

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHET--KWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           + SLP++L EK+  +L+D V +        K    R+  IL  LY  GLRISE + L  +
Sbjct: 136 TKSLPKSLTEKEVKSLIDAVQITDEDSELKKKAKMRDKVILEFLYSTGLRISELVKLQKK 195

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           +I  D+ T+R++GKG+K RIV    + R  I  Y      +        LF    G+ L 
Sbjct: 196 DIDFDERTIRVRGKGEKDRIVLFDENTRDLIDNYI-----ETQNQKSEYLFINKNGRKLT 250

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           P   Q  I++     G+    T H LRHSFATHLL NG D+R IQ +LGH  LSTTQIYT
Sbjct: 251 PRYVQMMIKEYAEKAGIKKKVTPHVLRHSFATHLLKNGVDIRVIQQLLGHSSLSTTQIYT 310

Query: 300 NVNSKNGGDWMMEIYDQT 317
           NV+     D +  +YD  
Sbjct: 311 NVD----MDTIKSVYDHA 324


>gi|291527524|emb|CBK93110.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 306

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 80/307 (26%), Positives = 153/307 (49%), Gaps = 19/307 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N+L+    ++ L + TL++Y  D RQF         E+ +++ I +++  ++  +I++ 
Sbjct: 9   ENYLEYCRTQKCLDEKTLKAYRIDLRQF--------SEEPSLEKIIEITTNDLEDYIARL 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRAL---NEKQA 134
             Q    +++KR ++ IK+F  YL+ +++   +    ++ + ++   LP+ +     ++ 
Sbjct: 61  HQQ-YKPKTVKRKIASIKAFFHYLEYKELLAINPFTKIQVHFREPTILPKIIPLHTVEKF 119

Query: 135 LTLVDNVLLHT-SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           LT++     +  ++  +    R++A+  LL+  G+RISE  SL  ++I     ++ I GK
Sbjct: 120 LTMIYTQRDNAKTNYQRRNALRDAAVSELLFATGMRISELCSLKNEDINLHDGSILIYGK 179

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GDK R + +       I+E Y    F   +      F    GKPL+    +R I +    
Sbjct: 180 GDKERRIHIGNDSVSKIIEEY-KAEFQTEIRSCNHFFANQNGKPLSDQAVRRMINKYCSL 238

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             + L  T H  RH+FAT LL    D+R IQ +LGH  ++ T+IYT+V +    D ++  
Sbjct: 239 ADIDLHITPHMFRHTFATSLLEADVDIRYIQEMLGHSSINVTEIYTHVTTAKQRDILI-- 296

Query: 314 YDQTHPS 320
               HP 
Sbjct: 297 --SKHPR 301


>gi|240080225|ref|ZP_04724768.1| XerD [Neisseria gonorrhoeae FA19]
 gi|240112438|ref|ZP_04726928.1| XerD [Neisseria gonorrhoeae MS11]
 gi|240115178|ref|ZP_04729240.1| XerD [Neisseria gonorrhoeae PID18]
 gi|254493240|ref|ZP_05106411.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 1291]
 gi|260441004|ref|ZP_05794820.1| XerD [Neisseria gonorrhoeae DGI2]
 gi|268596375|ref|ZP_06130542.1| tyrosine recombinase xerD [Neisseria gonorrhoeae FA19]
 gi|268598504|ref|ZP_06132671.1| tyrosine recombinase xerD [Neisseria gonorrhoeae MS11]
 gi|268600856|ref|ZP_06135023.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID18]
 gi|291044335|ref|ZP_06570044.1| tyrosine recombinase xerD [Neisseria gonorrhoeae DGI2]
 gi|226512280|gb|EEH61625.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 1291]
 gi|268550163|gb|EEZ45182.1| tyrosine recombinase xerD [Neisseria gonorrhoeae FA19]
 gi|268582635|gb|EEZ47311.1| tyrosine recombinase xerD [Neisseria gonorrhoeae MS11]
 gi|268584987|gb|EEZ49663.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID18]
 gi|291011229|gb|EFE03225.1| tyrosine recombinase xerD [Neisseria gonorrhoeae DGI2]
          Length = 291

 Score =  215 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 131/296 (44%), Gaps = 16/296 (5%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L ++R LS+ TL SY  D  +    L+               +   +          
Sbjct: 10  LETLWLDRRLSRNTLDSYRRDLEKIARRLSLCGRTLKDADEADLAAAVYV---------D 60

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                S  R+LS  K    ++++  +  ++    ++  K   ++P  + E+Q   L    
Sbjct: 61  GEQRGSQARALSACKRLYVWMEREGMRADNPTRLLKPPKIDRNIPTLITEQQISRL---- 116

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
            L           R+ A+L L+Y  GLR+SEA+ L   N+  D+  +   GKGDK R+VP
Sbjct: 117 -LAAPDTDTPHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITTLGKGDKQRMVP 175

Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +       +  YY    P  L       LF   +   ++  +    +++     G+    
Sbjct: 176 MGQESAYWVERYYTEARPLLLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIG-HI 234

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           + H+LRH+FATHL+ +G DLR +Q +LGH  L+TTQIYT+V +      + E + +
Sbjct: 235 SPHSLRHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANVRLHSVVKEHHSR 290


>gi|315024066|gb|EFT37068.1| Integrase, site-specific recombinase [Riemerella anatipestifer
           RA-YM]
          Length = 293

 Score =  215 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 78/308 (25%), Positives = 141/308 (45%), Gaps = 20/308 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  + IE+  S  TL SY  D + F  F+     E     T+  +    IR F+  
Sbjct: 4   VEKFLDYITIEKRYSLNTLASYSRDLQDFSDFVK----ETEGADTLISVDKKVIRNFVVY 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQAL 135
                +  R++ R LS ++SF  YL K  I + S +  + +LK      +P   ++K+  
Sbjct: 60  LSENNLSKRTINRKLSALRSFYIYLVKLGIISASPMETVSSLKFYGEKQIP--FSQKEME 117

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L        +   +     N  I+ LLY  G+R SE   L  +++   Q+ +R+ GKG+
Sbjct: 118 NL-------QNLLNEEKLLLNKLIIELLYQTGMRKSELCRLALKDVDFIQNRIRVVGKGN 170

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K+R +P+  ++++ +  Y +        N+    F    G+ L        +      + 
Sbjct: 171 KMREIPISENIKRELKLYLEKERKPTKENL-DYFFVRESGQKLTGKFVYSVVNDYLSAVT 229

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H LRHSFATH+L NG ++  ++ ILGH  L++TQ+YT+ +     + + ++ +
Sbjct: 230 SKKKKSPHVLRHSFATHVLENGAEIAQVKEILGHASLASTQVYTSTD----VNKLKKVLN 285

Query: 316 QTHPSITQ 323
             HP   +
Sbjct: 286 SFHPRGKK 293


>gi|323342009|ref|ZP_08082242.1| integrase/recombinase XerD [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464434|gb|EFY09627.1| integrase/recombinase XerD [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 304

 Score =  215 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 86/298 (28%), Positives = 138/298 (46%), Gaps = 16/298 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +++  L+     + LT+ SY  D  Q++ +L     E  ++ ++  +    IR +I   +
Sbjct: 7   DFIHYLQFIDPKAALTVASYRNDLNQYIEYL-----EHESVSSLESVDAEVIRKYIDDIK 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  +++  +  I+ F +YL             +    K   LP  +++     L  
Sbjct: 62  ND-YAASTIQHKIVVIRQFHQYLLNSGQLQHDPTAFVSLKNKGTRLPTIVSDDTIRKLF- 119

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                +       D  + AIL LLY CGLR+SE + L    +  DQ  LRI GKG+K R+
Sbjct: 120 -----SFDRVTGKDFMDYAILLLLYRCGLRVSECVHLEFSQVYLDQKWLRILGKGNKERM 174

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +PL       + EY ++      +     +F   +GK ++       I+   + +G+   
Sbjct: 175 IPLSIDAIDGLSEYINIIRPQWMIQPTEQIFINAKGKGISRQYIDSMIKSRCKEMGILTP 234

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            +AHTLRHSFAT +L  G DLR IQ +LGH  +STTQIYT+VN K     +   YDQ 
Sbjct: 235 ISAHTLRHSFATAILDTGVDLRIIQELLGHQDISTTQIYTHVNKKT----LKREYDQF 288


>gi|289525911|emb|CBJ15393.1| integrase/recombinase [Chlamydia trachomatis Sweden2]
 gi|296435499|gb|ADH17677.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           E/150]
          Length = 300

 Score =  215 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 93/307 (30%), Positives = 159/307 (51%), Gaps = 20/307 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + +   L ++RG+S L++Q+Y  D   FL        ++ +I+   +++   +  F+
Sbjct: 10  RLIEQFTIFLSVDRGISPLSVQAYCQDVLLFL--------QRASIEATDRINQESVFLFV 61

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            K    K  + +L R L  +K F  +LK  K+  +     + + K    LP  L+ ++  
Sbjct: 62  EKCHKAKESETTLARRLIALKVFFHFLKDAKMLDQQPF--IEHPKIWKRLPSILSTEEVN 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +L+D  L +  +    I +R++AILY  Y  G+R+SE   L   +I DD   +R+ GKG 
Sbjct: 120 SLLDQPL-NIPNLDTHIASRDAAILYTFYATGIRVSELCDLCIGDISDD--FIRVTGKGR 176

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLN--IQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R+VP+    ++AI  Y      +L      +  +F  IRGK L+     + I    + 
Sbjct: 177 KTRLVPISIKAKQAIDAYLSSFRDELQKKNPSEEHVFLSIRGKKLDRSCIWKRITFYAKL 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +      + H+LRH+FATHLL+N  DLR IQ +LGH R+S+T+IYT+V S++    ++E 
Sbjct: 237 VT-TKRISPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASES----LIEK 291

Query: 314 YDQTHPS 320
           +   HP 
Sbjct: 292 FHTYHPR 298


>gi|325131793|gb|EGC54493.1| tyrosine recombinase XerD [Neisseria meningitidis M6190]
 gi|325137843|gb|EGC60418.1| tyrosine recombinase XerD [Neisseria meningitidis ES14902]
          Length = 291

 Score =  215 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 78/300 (26%), Positives = 132/300 (44%), Gaps = 20/300 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L ++R LS+ TL  Y  D  +    L+               +   +          
Sbjct: 10  LETLWLDRRLSQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYV---------D 60

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                S  R+LS  K    ++++  I T++    ++  K   ++P  + E+Q   L    
Sbjct: 61  GEQRSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRL---- 116

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
            L           R+ A+L L+Y  GLR+SEA+ L   ++  D+  +   GKGDK R+VP
Sbjct: 117 -LAAPDTDTPHGLRDKALLELMYATGLRVSEAVGLNFSSVDLDRGCITALGKGDKQRMVP 175

Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +       +  YY    P  L       LF   +   ++  +    +++     G+    
Sbjct: 176 MGQESAYWVERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYAGRAGIGY-I 234

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H+LRH+FATHL+ +G DLR +Q +LGH  L+TTQIYT+V +     W+  +  + H  
Sbjct: 235 SPHSLRHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVAN----VWLQGVVKEHHSR 290


>gi|312135197|ref|YP_004002535.1| integrase family protein [Caldicellulosiruptor owensensis OL]
 gi|311775248|gb|ADQ04735.1| integrase family protein [Caldicellulosiruptor owensensis OL]
          Length = 328

 Score =  215 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 83/318 (26%), Positives = 154/318 (48%), Gaps = 35/318 (11%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-----------------IQT 62
           ++L  +   +  S  T++ Y  D R FL +L       ++                 I+ 
Sbjct: 12  DFLNYMITIKNKSPNTIKEYYYDLRNFLRYLKAKELNMLSQIEKIEDLENIDVSSFEIEK 71

Query: 63  IRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLK 120
           ++ L+ + +  + S   T+   G  +  R ++ I+SF KYL  + K+  ++   ++ + K
Sbjct: 72  LKTLTLSNLYEYFSFLATRFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPK 131

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                PR L  +++  L+  +              + A++ L   CGLR+SE +++   +
Sbjct: 132 LGKRNPRYLTLEESKKLLSAIDGENKER-------DFAMITLFLNCGLRLSELVNINLSD 184

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I DD   LRI GKG+K RI+ L  + ++AI  Y  + P +  +  +  LF   R K ++ 
Sbjct: 185 IKDD--MLRIVGKGNKERIIYLNKACKEAIENYLKVRPTE-GVKDKDALFLSERKKRISR 241

Query: 241 GVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
              Q  + +  +  G+     +AH LRH+ AT +  +G  D+RS+Q+ILGH  +STT+IY
Sbjct: 242 RTVQYIVEKYVKMAGINQKKISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIY 301

Query: 299 TNVNSKNGGDWMMEIYDQ 316
           T+VN     D + + +++
Sbjct: 302 THVND----DDIKKAFEK 315


>gi|15639386|ref|NP_218835.1| integrase/recombinase (xprB) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025628|ref|YP_001933400.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14]
 gi|3322673|gb|AAC65379.1| integrase/recombinase (xprB) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018203|gb|ACD70821.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14]
 gi|291059785|gb|ADD72520.1| tyrosine recombinase XerC [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 297

 Score =  215 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 76/307 (24%), Positives = 140/307 (45%), Gaps = 16/307 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           ++   +L+ L   R LS  T+ +Y  D   F  +L          +   +++ +++R F+
Sbjct: 4   EQFTQYLEYLFRVRRLSAHTVSAYARDLNLFERWLQHAQ------RACARVTVSDMRLFV 57

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            +   + +   S+ R LS ++ F  + KK+    ++    +RN+K  + LPR +   QA 
Sbjct: 58  CELGRRGLSAASINRVLSVVRGFYVFAKKKHWCADNPARLVRNIKGPSKLPRFMFPPQAK 117

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
                     S        R++A+  +LY  G R+SE  +L+ +++    S+  ++GKGD
Sbjct: 118 AF----YTLPSRTDILWQERDAALFAMLYSTGCRVSEIAALSLKDVHPHLSSAIVRGKGD 173

Query: 196 KIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           + R V + P  +  +  Y            +    LF   RG+ L+    Q  + +    
Sbjct: 174 RERTVFIAPFAQNFLHVYMQARAQRCARYASCTPALFVNQRGRSLSVRGIQYLVSRYVLL 233

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                + + H  RHSFA+ L+  G D+R  Q +LGH  +STTQ Y +V S+     + ++
Sbjct: 234 AQDVHALSPHAFRHSFASTLIRRGADVRVAQELLGHASVSTTQRYVHVTSEQ----LQDL 289

Query: 314 YDQTHPS 320
           Y + HP 
Sbjct: 290 YHRAHPR 296


>gi|56420265|ref|YP_147583.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
 gi|56380107|dbj|BAD76015.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
          Length = 301

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 87/303 (28%), Positives = 142/303 (46%), Gaps = 14/303 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
             +    ++  L+IE+  S  T+  Y  D R F  FL  +         +  ++ T +R 
Sbjct: 3   FRQAIDEFVLYLQIEKNYSLNTVDGYAYDLRCFENFLIQHGYS----VQLHDITKTHVRR 58

Query: 74  FISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           FI  + T + +  R++ R +S +KSF KY  K  +     ++ +   K  + LP  ++  
Sbjct: 59  FIQHQITKENVKPRTIYRRISCLKSFSKYCVKENLIDSDFMIGIDTPKTDSKLPTYMSLS 118

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L          +   +  RN  +  LL   G+R SE + LT + I    +T+RI G
Sbjct: 119 ELRKLFHF----LEQDNSRMAMRNHLLFKLLATTGMRRSEIVELTWEQIDLSNNTIRIYG 174

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R++PL P V   I  Y      +  L+   P+F    GK LNP    +  +++ +
Sbjct: 175 KGKKERLLPLHPMVVPLIKSY-MESLEEYQLHPSQPVFLNKNGKKLNPRGLHKIFKEILQ 233

Query: 253 YLGLPL-STTAHTLRHSFATHLLS---NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
             GLP    + H LRH+FAT L+       DLR++Q +LGH  L TTQ+YT+V+ +    
Sbjct: 234 KAGLPPQRFSLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVDFEQKKK 293

Query: 309 WMM 311
            + 
Sbjct: 294 AIE 296


>gi|255507490|ref|ZP_05383129.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           D(s)2923]
 gi|296439216|gb|ADH21369.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           E/11023]
          Length = 300

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 93/307 (30%), Positives = 158/307 (51%), Gaps = 20/307 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + +   L ++RG+S L++Q+Y  D   FL        ++ +I+   +++   +  F+
Sbjct: 10  RLIEQFTIFLSVDRGISPLSVQAYCQDVLLFL--------QRASIEATDRINQESVFLFV 61

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            K    K  + +L R L  +K F  +LK  K+  +     + + K    LP  L+ ++  
Sbjct: 62  EKCHKAKESETTLARRLIALKVFFHFLKDAKMLDQQPF--IEHPKIWKRLPSILSTEEVN 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +L+D  L +  +    I +R++AILY  Y  G+R+SE   L   +I DD   +R+ GKG 
Sbjct: 120 SLLDQPL-NIPNLDTHIASRDAAILYTFYATGIRVSELCDLCIGDISDD--FIRVTGKGR 176

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLN--IQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R+VP+    ++AI  Y      +L      +  +F  IRGK L+     + I    + 
Sbjct: 177 KTRLVPISIKAKQAIDAYLSSFRDELQKKNPSEEHVFLSIRGKKLDRSCVWKRITFYAKL 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +      + H+LRH+FATHLL N  DLR IQ +LGH R+S+T+IYT+V S++    ++E 
Sbjct: 237 VT-TKRISPHSLRHAFATHLLDNHADLRIIQEMLGHSRISSTEIYTHVASES----LIEK 291

Query: 314 YDQTHPS 320
           +   HP 
Sbjct: 292 FHTYHPR 298


>gi|89890184|ref|ZP_01201695.1| site-specific integrase/recombinase XerD protein [Flavobacteria
           bacterium BBFL7]
 gi|89518457|gb|EAS21113.1| site-specific integrase/recombinase XerD protein [Flavobacteria
           bacterium BBFL7]
          Length = 295

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 82/306 (26%), Positives = 158/306 (51%), Gaps = 14/306 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L  L  E+  S+ T+ +YE D  QF +FL    +       I+  SY  IR +++ 
Sbjct: 3   LKSYLDYLSFEKKYSQNTITAYEKDLEQFGLFLMDEYD-----LEIQNASYPIIRTWLAL 57

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q++  R++ R ++ +KS+ K+L   +      + N ++LK S ++    ++++   +
Sbjct: 58  LLDQQLSSRTVNRKVAALKSYFKFLLLIEQIDYHPLSNHKSLKVSKNIQIPFSKQEVQQI 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++     +     +   R+  I+ L Y  G+R  E ++L  +N+     T+++ GK +K 
Sbjct: 118 LN----ASYDSEDFESVRDLLIIELFYVTGVRREELINLRIENVNLLSRTIKVVGKRNKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R++P+L SV+  +  Y  L    +  + +  LF   +G  L PG+  R I+     +   
Sbjct: 174 RLIPMLESVKFKVEAYLLLK-ESIETDKRPELFVTRKGDKLYPGLVYRIIKSYFSKVSQK 232

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           + T+ H LRHSFATHLL  G DL +++ +LGH  L++TQ+YT+ + +     + E++   
Sbjct: 233 VKTSPHILRHSFATHLLDEGADLNAVKELLGHASLASTQVYTHSSME----MLKEMHRNA 288

Query: 318 HPSITQ 323
           HP   +
Sbjct: 289 HPRSKK 294


>gi|255349272|ref|ZP_05381279.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis 70]
 gi|255503808|ref|ZP_05382198.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis 70s]
          Length = 300

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 93/307 (30%), Positives = 159/307 (51%), Gaps = 20/307 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + +   L ++RG+S L++Q+Y  D   FL        ++ +I+   +++   +  F+
Sbjct: 10  RLIEQFTIFLSVDRGISPLSVQAYCQDVLLFL--------QRASIEATDRINQESVFLFV 61

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            K    K  + +L R L  +K F  +LK  K+  +     + + K    LP  L+ ++  
Sbjct: 62  EKCHKAKESETTLARRLIALKVFFHFLKDAKMLDQQPF--IEHPKIWKRLPSILSTEEVN 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +L+D  L +  +    I +R++AILY  Y  G+R+SE   L   +I DD   +R+ GKG 
Sbjct: 120 SLLDQPL-NIPNLDTHIASRDAAILYTFYATGIRVSELCDLCIGDISDD--FIRVTGKGR 176

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLN--IQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R+VP+    ++AI  Y      +L      +  +F  IRGK L+     + I    + 
Sbjct: 177 KTRLVPISIKAKQAIDAYLSSFRDELQKKNPSEEHIFLSIRGKKLDRSCVWKRITFYAKL 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +      + H+LRH+FATHLL+N  DLR IQ +LGH R+S+T+IYT+V S++    ++E 
Sbjct: 237 VT-TKRISPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASES----LIEK 291

Query: 314 YDQTHPS 320
           +   HP 
Sbjct: 292 FHTYHPR 298


>gi|256371915|ref|YP_003109739.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008499|gb|ACU54066.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331]
          Length = 299

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 75/305 (24%), Positives = 136/305 (44%), Gaps = 18/305 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +    S+LT  +Y  D      +L            +   S   +R+++  
Sbjct: 9   VDEYLTLLVVAADRSELTAIAYRSDLEAVATWLEARGSR------LLDASPALLRSWVDA 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              ++   R ++R+ S ++   +Y ++     +  +  +     + +LPRAL   +   L
Sbjct: 63  -AGRERSPRGVQRAASALRGLFRYAQRVGARADDPMEGIHAPGTAVALPRALARDEVERL 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +++V            AR+ AIL +LYG G+R+SE    T  + +     + + GK  + 
Sbjct: 122 IESV-----GTADVAGARDRAILEVLYGSGVRVSELCGFTL-DTIAQGRWVPVVGKRGRE 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VP+    R A+ ++       L    ++ LF  +RG P+        ++Q    +GL 
Sbjct: 176 RLVPISAPARDALEQWVVRWRPQLAPKHRM-LFVNLRGAPITRQGVWLVLKQRASRVGLG 234

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRHS A H++  G DLR +Q ILGH  L+TT++YT V+  +       +Y + 
Sbjct: 235 DRVSPHVLRHSLAVHMVEAGADLRVVQEILGHASLATTELYTKVSEGHVD----AVYQRA 290

Query: 318 HPSIT 322
           HP   
Sbjct: 291 HPRAR 295


>gi|258543858|ref|ZP_05704092.1| tyrosine recombinase XerC [Cardiobacterium hominis ATCC 15826]
 gi|258520898|gb|EEV89757.1| tyrosine recombinase XerC [Cardiobacterium hominis ATCC 15826]
          Length = 301

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 77/312 (24%), Positives = 142/312 (45%), Gaps = 19/312 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           + +  + L  L  ERG +  TL +Y     QF         E    + +  L   +++ +
Sbjct: 1   MNDIDDHLAYLRYERGKAAQTLATYRRLLYQFA--------EAHRDRDLHALEPRDLQNY 52

Query: 75  ISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNEK 132
           ++K     K    +L +  + ++S+ ++L + +         ++  +++   LP AL  +
Sbjct: 53  LTKTLGGGKYSPATLNQHRAALRSYYRWLHRLRGLPTDPAAALKLPRQARQPLPDALTPE 112

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q  TL++               R+  IL L Y  GLR++E  SL  +++  D     I+G
Sbjct: 113 QITTLLE-----APATDNPNLIRDHTILELFYSAGLRLAELASLDNRDLGPDSEHHIIRG 167

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG   R++ +    R+A+  +  +    L    +  LF    G  L        ++    
Sbjct: 168 KGGVERLIFIGSKAREALARWQTVRGQLLKKADEPALFLNKNGGRLTERGIALRLKAYAA 227

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                ++   H LRH+FA+H+L + GDLRS+Q +LGH  L+TTQIYT+++ ++    +  
Sbjct: 228 ERLPGVNVHPHMLRHTFASHILQSSGDLRSVQELLGHKNLATTQIYTHLDYQH----LAR 283

Query: 313 IYDQTHPSITQK 324
            YD+ HP   +K
Sbjct: 284 TYDEKHPRAKKK 295


>gi|313887245|ref|ZP_07820939.1| putative ribosomal subunit interface protein [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923298|gb|EFR34113.1| putative ribosomal subunit interface protein [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 413

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 152/314 (48%), Gaps = 15/314 (4%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +++ EL +  + +++ L +ER  S LTL +Y      ++        ++           
Sbjct: 11  MLTEELEQTLEAFIEYLRLERNASPLTLTTYRPAITSYMECALELASDE---WQPSDADR 67

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R +I ++   ++   ++ ++LS +KSF KYL+ R +   +    +R  K+ ++LP  
Sbjct: 68  DLVRNWIMQQMDDELTSTTVNKNLSAVKSFYKYLQLRGVVDNNPTRYLRGPKREHTLPSF 127

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L + Q    ++ +    +    ++  RN  I+  +Y  GLR +E  SL  Q +     +L
Sbjct: 128 LTQAQIEEALETI---PTDPEDFLAVRNRLIIETIYQTGLRRAEVASLETQQVDLASMSL 184

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R+ GKG K RIVP   ++++ +  Y  L   +  +      F  ++ +PL+     + + 
Sbjct: 185 RVVGKGRKERIVPFGEALKEQMKAYLTLK--ERKVGQSRYFFVTLKCRPLSGADVYQVVH 242

Query: 249 QLRRYL-GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +    + GLP    AHTLRHSFAT +L+ G  + SI+ +LGH  L TT  YT+ + +   
Sbjct: 243 KALDVVPGLPRR-GAHTLRHSFATEMLNAGAPITSIKELLGHSNLETTTRYTHTSFEQ-- 299

Query: 308 DWMMEIYDQTHPSI 321
             + ++Y   HP  
Sbjct: 300 --LKQLY-HAHPRA 310


>gi|51459866|gb|AAU03829.1| integrase/recombinase [Rickettsia typhi str. Wilmington]
          Length = 297

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 91/308 (29%), Positives = 150/308 (48%), Gaps = 27/308 (8%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
            L  ER LSK ++ SY+ D    L F  + T++KI+   I   +   IR +I    +  +
Sbjct: 1   MLLAERALSKNSILSYKRDL---LDFHNYLTKQKISELNI---TTRNIRKWIEYLASNNL 54

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
             RS+ R +S IKS+  +L     T  + +LN+   K  N LP  L+  Q   +++    
Sbjct: 55  HARSINRKISTIKSYYTFLISENHTAFNPVLNVDLPKYQNKLPVILSIDQIKLILEYC-- 112

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-------QSTLRIQGKGDK 196
             S +      R +A+++LLY  GLR+SE +SL   +I+ +       +    + GKG+K
Sbjct: 113 --SKDHTPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNNTSKGIVRKIFSVLGKGNK 170

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGK-PLNPGVFQRYIRQLRR 252
            R++ +      +I +Y  +    +N         LF        +    F   ++ +  
Sbjct: 171 ERVIVINDQAVLSITKYLKIRDIFVNKAKSKNLIYLFPSSAVAGYMTRQNFAILLKSVAL 230

Query: 253 YLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            +GL P + + H LRHSFA+HLL  G DLR IQ +LGH  +STTQIYT++++ +    ++
Sbjct: 231 DIGLNPKNVSPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLHTNHLKQALL 290

Query: 312 EIYDQTHP 319
                 HP
Sbjct: 291 -----HHP 293


>gi|325960047|ref|YP_004291513.1| tyrosine recombinase xerC [Methanobacterium sp. AL-21]
 gi|325331479|gb|ADZ10541.1| Tyrosine recombinase xerC [Methanobacterium sp. AL-21]
          Length = 331

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 92/312 (29%), Positives = 154/312 (49%), Gaps = 26/312 (8%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           +F+  +  +++L  LEI R  SK T+++Y      F  FL   +E+ +  +   +L    
Sbjct: 38  AFDFPEMIEDYLIELEI-RNYSKNTIKTYRSIIINFHKFLK--SEKDLYDE---RLVLRA 91

Query: 71  IRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            + +I    R + +    +      +K F ++           + +++  K++ SLP++L
Sbjct: 92  FKRYIRYLKREKNVSQNYIYLVTVVVKKFFEFGGI------GVLKDVQTPKRTKSLPKSL 145

Query: 130 NEKQALTLVDNVLLHTSH----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           NE + L+L++ +           ++++  RN  IL LLY  GLR+SE ++L   +     
Sbjct: 146 NENEILSLINAMDHDKDDYLSETSEFLRLRNKVILALLYSSGLRVSELVTLHSDSFDLTD 205

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            T+RI+GKG+K RIV      ++ +  Y  +       +    LF    G  L P   Q 
Sbjct: 206 RTIRIRGKGEKDRIVLFDEQTKELLEGYLQVR-----GDHSDYLFVNRSGNHLTPRYIQM 260

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            I+   +  G+    T H LRHSFATHLL NG D+R+IQ +LGH  LSTTQIYT+V+   
Sbjct: 261 MIKDYAKAAGIKKKVTPHILRHSFATHLLKNGVDIRAIQQLLGHSNLSTTQIYTSVD--- 317

Query: 306 GGDWMMEIYDQT 317
               +  +YD+ 
Sbjct: 318 -MHTLKNVYDRA 328


>gi|85374026|ref|YP_458088.1| tyrosine recombinase XerC [Erythrobacter litoralis HTCC2594]
 gi|84787109|gb|ABC63291.1| tyrosine recombinase XerC [Erythrobacter litoralis HTCC2594]
          Length = 264

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 100/262 (38%), Positives = 152/262 (58%), Gaps = 9/262 (3%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           + +   +   +R  ++ RR + + + S  R LS +K+F+ Y +      E+    +R  +
Sbjct: 11  EDVAATNAVTLRRHLAARRAEGLANTSAARELSALKAFIAYARSETGDAEATAPRLRGPR 70

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LPR +   +A+ L D V    + +  WI  R+ A+L LLYG GLRI+EALSLT + 
Sbjct: 71  IKKGLPRPVTPDEAINLADTVDASAADD--WIGKRDRAVLLLLYGAGLRIAEALSLTGKA 128

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           +   +S L++ GKG K R+VP+LP +  A+ +Y   CP+ +    + PLFRG +G PL+ 
Sbjct: 129 VPLGES-LQVTGKGGKQRVVPILPLIGDAVADYAKTCPWPIE--PKGPLFRGAKGGPLSQ 185

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           G+ Q+   + RR LGLP + T H LRHSFATHLL  G DLRS+Q +LGH  L +TQIYT 
Sbjct: 186 GMIQKTTARARRALGLPDTATPHALRHSFATHLLGAGADLRSLQELLGHASLGSTQIYTK 245

Query: 301 VNSKNGGDWMMEIYDQTHPSIT 322
           V++      +++ Y + HP   
Sbjct: 246 VDAAT----LLDTYRKAHPREK 263


>gi|224543273|ref|ZP_03683812.1| hypothetical protein CATMIT_02473 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523806|gb|EEF92911.1| hypothetical protein CATMIT_02473 [Catenibacterium mitsuokai DSM
           15897]
          Length = 297

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 81/312 (25%), Positives = 146/312 (46%), Gaps = 19/312 (6%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           + +++   L  ERGLS+ T+Q Y  D + F  ++ +          I++   + I A+  
Sbjct: 5   DLKDFKSYLLFERGLSENTVQGYIRDIKAFYEYIDY---------DIKKFDLSHIDAYFC 55

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           + +       S++R +  ++ + ++L + +   +  +      K    LP+ L+ ++ + 
Sbjct: 56  ELKDDGYKVTSIRRKIVSLRQYNEFLSRTRGM-QDIMTQYDLPKTDKKLPKVLSLEEIIK 114

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           ++ ++      ++     RN A++ LL   G+RISE + L   +I    S + + GKG+K
Sbjct: 115 VIKSI-----DDSNPAGKRNKAMMLLLINTGMRISELVHLEINDINHSVSNVSVVGKGNK 169

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R++PL       +  Y        N      LF    G+ +    F   +++L    G+
Sbjct: 170 ERLIPLDEETCSYVYSYMQNDRSFFNKKNNQWLFMMNDGRRMTRENFYNILQKLVIGAGV 229

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               T H LRH+FAT LL N  DLRSIQ +LGH  +STT IYT+V  +   D     Y++
Sbjct: 230 RDHFTPHMLRHTFATTLLENHCDLRSIQVMLGHQDISTTTIYTHVTHRQILDD----YNK 285

Query: 317 THPSITQKDKKN 328
            HP   ++ K  
Sbjct: 286 YHPGNARRKKDE 297


>gi|72161078|ref|YP_288735.1| site-specific tyrosine recombinase XerC [Thermobifida fusca YX]
 gi|71914810|gb|AAZ54712.1| tyrosine recombinase XerC subunit [Thermobifida fusca YX]
          Length = 303

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 84/303 (27%), Positives = 135/303 (44%), Gaps = 16/303 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            + ++L +ERG S  T+++Y  D R  L +LA           +  L    +R ++    
Sbjct: 16  EFDRHLRVERGCSPHTVRAYLTDVRSLLDYLA-----DTGAGGLEDLDLATLRGWLGTLH 70

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  ++ R  +  + F  YL +         L +   ++   LP  L+E QA  +  
Sbjct: 71  DAGASRATMARRTAAARVFTAYLHRSGRLATDPGLRLATPRRHRRLPAVLDEDQAARV-- 128

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                   E   +  R SA++ +LY   +R++E   L   ++  ++ TLR+ GKG + R+
Sbjct: 129 -CAAARDGEESPLVLRRSAVVEVLYSTAIRVAELCGLDLDDVDWERHTLRVLGKGGRERV 187

Query: 200 VPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+      A+  +     P     +    LF G RG  L     +R +      +    
Sbjct: 188 VPIGVPALDAVDRWLRDGRPQWATAHSGRALFLGARGGRLGERTARRDVYAATAAVA--- 244

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
            T  H LRHS ATHLL+ G DLRS+Q ILGH  L++TQIYT+V+       +  +Y Q H
Sbjct: 245 RTGPHGLRHSAATHLLNGGADLRSVQEILGHASLASTQIYTHVS----IGRLASVYQQAH 300

Query: 319 PSI 321
           P  
Sbjct: 301 PRA 303


>gi|251772344|gb|EES52912.1| phage integrase family protein [Leptospirillum ferrodiazotrophum]
          Length = 336

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 92/323 (28%), Positives = 142/323 (43%), Gaps = 8/323 (2%)

Query: 3   GNNLPEIVSFELLKER---QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
           G+  P     ELL++    Q + +NL +  G S  TL++   D        A   E    
Sbjct: 15  GSADPSARQQELLRDDPLCQAYRRNLVLS-GRSPKTLKAAMDDLALLAALEARLLEGGAG 73

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
                +L       F+ +   +     S+ R LS ++ F  +LK +    E     +   
Sbjct: 74  FL-WERLDRPRALRFVKRLHDRGYAPSSIARILSSLRGFYGFLKTQGHIAEDPFAGISGP 132

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHT--SHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           + +  LP  L E +A TLV   + +       +    R+ AIL L Y  G+R+SE   L 
Sbjct: 133 RANRPLPPLLTETEAETLVTAPVRNPVPKGGDEGTSLRDRAILELFYQTGVRLSELCGLL 192

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
            ++      +LR++GKG K R VP++    KA+            ++   PLF    G  
Sbjct: 193 WEDAAPGIVSLRVRGKGGKERRVPVVGEALKALCA-LREFLLKSGVSPTGPLFADGDGGA 251

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+P    R +++  R  GL  + + H LRHS ATHLL    DLR IQS+LGH  L +TQ 
Sbjct: 252 LSPWQVSRIVKKYAREAGLQKTVSPHALRHSCATHLLDREADLREIQSLLGHASLGSTQR 311

Query: 298 YTNVNSKNGGDWMMEIYDQTHPS 320
           Y +         + +I D+T P+
Sbjct: 312 YLHTGLSEIARKLSKIRDETPPA 334


>gi|146296950|ref|YP_001180721.1| site-specific tyrosine recombinase XerC [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410526|gb|ABP67530.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 328

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 84/318 (26%), Positives = 151/318 (47%), Gaps = 35/318 (11%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-----------------KITIQT 62
           ++L  +   +  S  T++ Y  D R FL +L                          I+ 
Sbjct: 12  DFLNYMITIKNKSPNTIKEYYYDLRTFLRYLKAKDLNILSQIEKIEDLENIDVSNFEIER 71

Query: 63  IRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLK 120
           ++ L+ + +  + S   T+   G  +  R ++ I+SF KYL  + K+  ++   ++ + K
Sbjct: 72  LKTLTLSNLYEYFSFLATRFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPK 131

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                PR L   ++  L+  +              + AI+ L   CGLR+SE +++   +
Sbjct: 132 LGKRNPRYLTLDESKKLLSAIDGENKER-------DFAIITLFLNCGLRLSELVNINLSD 184

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I DD   LRI GKG+K RI+ L  + ++AI  Y  + P +  +  +  LF   R K ++ 
Sbjct: 185 IKDD--MLRIVGKGNKERIIYLNKACKEAIENYLKVRPTE-GVKDKDALFLSERKKRISR 241

Query: 241 GVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
              Q  + +  +  G+     +AH LRH+ AT +  +G  D+RS+Q+ILGH  +STT+IY
Sbjct: 242 RTVQYIVEKYVKMAGINQKKISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIY 301

Query: 299 TNVNSKNGGDWMMEIYDQ 316
           T+VN     D + + +++
Sbjct: 302 THVND----DDIKKAFEK 315


>gi|312127552|ref|YP_003992426.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
 gi|311777571|gb|ADQ07057.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 328

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 84/318 (26%), Positives = 153/318 (48%), Gaps = 35/318 (11%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-----------------IQT 62
           ++L  +   +  S  T++ Y  D R FL +L       ++                 I+ 
Sbjct: 12  DFLNYMITIKNKSPNTIKEYYYDLRTFLRYLKAKDLNMLSQIEKIEDLENIDVSNFEIEK 71

Query: 63  IRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLK 120
           ++ L+ + +  + S   T+   G  +  R ++ I+SF KYL  + K+  ++   ++ + K
Sbjct: 72  LKALTLSNLYEYFSFLATRFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPK 131

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                PR L   ++  L+  +              + AI+ L   CGLR+SE +++   +
Sbjct: 132 LGKRNPRYLTLDESKKLLSAIDGENKER-------DFAIITLFLNCGLRLSELVNINLSD 184

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I DD   LRI GKG+K RI+ L  + ++AI  Y  + P +  +  +  LF   R K ++ 
Sbjct: 185 IKDD--MLRIVGKGNKERIIYLNKACKEAIENYLKVRPTE-GVKDKDALFLSERKKRISR 241

Query: 241 GVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
              Q  + +  +  G+     +AH LRH+ AT +  +G  D+RS+Q+ILGH  +STT+IY
Sbjct: 242 RTVQYIVEKYVKMAGINQKKISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIY 301

Query: 299 TNVNSKNGGDWMMEIYDQ 316
           T+VN     D + + +++
Sbjct: 302 THVND----DDIKKAFEK 315


>gi|189184773|ref|YP_001938558.1| site-specific tyrosine recombinase XerC [Orientia tsutsugamushi
           str. Ikeda]
 gi|189181544|dbj|BAG41324.1| integrase/recombinase XerC [Orientia tsutsugamushi str. Ikeda]
          Length = 312

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 126/319 (39%), Positives = 189/319 (59%), Gaps = 11/319 (3%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQTIRQLSY 68
           ++ +L K    WL  L+  +  S  T  SY  D +QFL F+  Y    ++ I  +  +  
Sbjct: 3   LNSQLEKIITEWLNYLKNYKNYSINTCSSYNNDLQQFLNFIVDYCNLSELKISHLCSVDI 62

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R+++S+R   +    S  R+LS +++F KYL K        I  +R+ K +  LP+A
Sbjct: 63  RLMRSWLSQRYNLQYNSSSNSRALSSVRNFYKYLFKHHNLVNKIICAVRSPKLAKRLPKA 122

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+ +  +       ++     KWI AR+ A+L LLYG GLRISEALS+T  +      +L
Sbjct: 123 LDIQDTVA--CTTEINNIANDKWIGARDKALLLLLYGQGLRISEALSVTKAS--LKSESL 178

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            I+GKG+KIR++P L   ++ + +Y +L P+ L  N   PLF G RGK L P VF R++ 
Sbjct: 179 IIKGKGNKIRLIPWLDITKQLLSDYVNLVPYSLTDNS--PLFVGKRGKKLQPAVFGRHLI 236

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +LRR L LP S TAHT RH FA+HLL+NG DLRSIQ +LGH  LS+TQIYT +NS    D
Sbjct: 237 KLRRQLNLPESLTAHTFRHCFASHLLNNGADLRSIQELLGHQSLSSTQIYTKINS----D 292

Query: 309 WMMEIYDQTHPSITQKDKK 327
           ++  +Y+++HP + +++ K
Sbjct: 293 FLTSVYNKSHPLVREQNNK 311


>gi|327399621|ref|YP_004340490.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411]
 gi|327182250|gb|AEA34431.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411]
          Length = 276

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 82/309 (26%), Positives = 143/309 (46%), Gaps = 39/309 (12%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++ E + +L +    +  SK T+++Y  DT++FL     +                ++  
Sbjct: 4   VINEFEEYLNS----KYSSKNTIKAYLTDTQEFLKNTKGF-------------DRDDVEV 46

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+ K   + +   ++ R L+ +  F ++LK +     + +  +   K+   LP+ L    
Sbjct: 47  FLVKLFDRGLSSSTITRKLASLSIFFEFLKLKGKVRINPLRVIDKPKQKKMLPKFLEVDD 106

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
            + L++ +           D R+ A+  L+Y   LR SEAL L   +I  +   +RI+ K
Sbjct: 107 VVALLEGIK----------DKRDRALFELIYSSSLRASEALGLDINDIDFENLRIRIRRK 156

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K+  VP+       + +Y       L    + PLF    GK L+    +R I++    
Sbjct: 157 GGKVVYVPISQRAALFLKDY-------LKDRKEGPLFLNRYGKRLSDRYLRRLIKKYA-L 208

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    + HTLRHS ATHLL++G D+R +Q +LGH  +  TQIYT++N K     + + 
Sbjct: 209 SSIFKDVSPHTLRHSKATHLLNSGMDIRLLQRLLGHSSIKATQIYTHLNLKE----LAQT 264

Query: 314 YDQTHPSIT 322
           YD THP   
Sbjct: 265 YDSTHPLAK 273


>gi|303241172|ref|ZP_07327680.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302591299|gb|EFL61039.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 330

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 89/337 (26%), Positives = 164/337 (48%), Gaps = 26/337 (7%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE--------EK 57
           +  I ++E+    +++L  L+  +G S  T+Q Y  D R F  FL             +K
Sbjct: 1   MKNISAYEMPLILKDFLNYLQTIKGKSINTVQVYFYDLRVFFRFLKMDRNLVDKKLDFDK 60

Query: 58  ITIQT-----IRQLSYTEIRAFISKRRTQKIGDR-SLKRSLSGIKSFLKYLKKR-KITTE 110
           I I       I+ ++ +++ +F+S     +     +  R ++ +KSF  YL  + K+   
Sbjct: 61  IDICDVDIELIKTVTLSDLYSFMSYVSNNRDNTSYARARKVASLKSFFNYLFNKAKLLNV 120

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
           +    + + K    LPR LN +++  L+ +V   T  E       + A+L L   CG+R+
Sbjct: 121 NPASELESPKILKRLPRYLNVEESKQLLSSVNTGTYSER------DYAMLTLFLNCGMRL 174

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
           SE + +   NI +D  TL + GKGDK R +PL  +  +AI  Y  + P +  +  +  LF
Sbjct: 175 SELVGININNIKND--TLTVIGKGDKERSIPLNSACLEAIEAYMKVRPVN-GVKDKNALF 231

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNG-GDLRSIQSILG 288
              R + ++    Q+ +++  +  GL P   + H LRH+ AT +   G  D+R++Q +LG
Sbjct: 232 ISGRKQRISKESVQKIVKKYIKQAGLDPQRYSTHKLRHTAATLMYKYGKVDIRALQELLG 291

Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           H  ++TT+IYT+++ +   D + +          +K+
Sbjct: 292 HESIATTEIYTHLDKEQLKDAVDKNPLSGFSRAKEKE 328


>gi|225028233|ref|ZP_03717425.1| hypothetical protein EUBHAL_02505 [Eubacterium hallii DSM 3353]
 gi|224954412|gb|EEG35621.1| hypothetical protein EUBHAL_02505 [Eubacterium hallii DSM 3353]
          Length = 303

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 75/307 (24%), Positives = 145/307 (47%), Gaps = 16/307 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L +    +L+  E  + L   TL++Y  D RQF+ F+              + S  +I 
Sbjct: 2   KLQETINMYLEYCEYRKELDWNTLKAYRIDLRQFVEFIEG-----------EEPSKEKIE 50

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNE 131
            +I+    +K   +++KR ++ +K F  YL++ +I  E+ +  +    K+   LPR +  
Sbjct: 51  RYITYLH-KKYKQKTVKRKIASLKVFYAYLEEEEIIEENPMRRVHTKFKEERVLPRIIPR 109

Query: 132 KQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           ++   L++ +   L  S + +    R+ A++ + +  G R+ E  ++  +NI  +   +R
Sbjct: 110 EEIEKLLNCMYKELRESEKNQRFILRDVAVVEVFFATGARVYEIANIRIENINLESGVIR 169

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
             GKG K RIV +       +L  Y     +  ++     F   R         +  +++
Sbjct: 170 FMGKGGKERIVQIGEESVIELLNRYYTENKE-EIHACGYFFINKRKSRFTEQSIRLMLKK 228

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +   +  + T H  RHSFAT+L+  G D+  +Q ILGH  + TTQIY +V+S+   D 
Sbjct: 229 YTKQAKIERNITPHMFRHSFATYLIEEGVDISCVQQILGHSSIKTTQIYIHVSSQKQADI 288

Query: 310 MMEIYDQ 316
           + E++ +
Sbjct: 289 LREMHPR 295


>gi|261364728|ref|ZP_05977611.1| tyrosine recombinase XerD [Neisseria mucosa ATCC 25996]
 gi|288567026|gb|EFC88586.1| tyrosine recombinase XerD [Neisseria mucosa ATCC 25996]
          Length = 291

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 79/300 (26%), Positives = 137/300 (45%), Gaps = 20/300 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L++L ++  LS  TLQ Y  D  +    L           T       ++   +     +
Sbjct: 10  LESLWLQDRLSHNTLQGYRRDLEKIAARLEE------GGYTWLNAEVADLADAVYAADEK 63

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                S  R+LS  K    +L++ +  T++    ++  K++  LP  + E Q   L    
Sbjct: 64  ---HSSQARALSACKRLYAWLEETERRTDNPTRFLKAPKQTQKLPTLITEAQIEKL---- 116

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
            L           R+ A+L ++Y  GLR++EA+ L   ++  ++  +R  GKGDK+RIVP
Sbjct: 117 -LAAPDTETPHGLRDKALLEVMYATGLRVTEAVKLQLGDLDLNRGCIRTIGKGDKLRIVP 175

Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +       +  Y     P  L   I   +F   +   ++  +    ++      G+  S 
Sbjct: 176 MGEEAVYWVERYCAESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKNYAETAGIT-SL 234

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H LRH+FATHL+++G DLR++Q +LGH  ++TTQIYT+V +      +  I D+ H  
Sbjct: 235 SPHGLRHAFATHLVNHGVDLRAVQLMLGHANINTTQIYTHVAN----IRLKNIVDEHHSR 290


>gi|58697179|ref|ZP_00372594.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|58536507|gb|EAL59887.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Drosophila simulans]
          Length = 278

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 104/286 (36%), Positives = 160/286 (55%), Gaps = 10/286 (3%)

Query: 41  CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLK 100
            D +  + FL  +   ++ + T++ LS  E+R++++ R  + +  RS  R+LS I++F K
Sbjct: 2   RDLKDLISFLNTHIGGEVNVGTLKNLSIPELRSWLTSRYARGVNARSNTRALSVIRNFFK 61

Query: 101 YLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
           Y+K         + ++    +  +LP+AL+     TL+  + L    E  W+  R  AI+
Sbjct: 62  YIKNNHNIDNEAVFSLSRPIQRRTLPKALSIPNIKTLLKEMKLSDLGE-PWVVKREIAII 120

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
            LLYG GLRISEAL+L   +I ++  +L + GKGDK R V +LP V+K I EY   CP+ 
Sbjct: 121 VLLYGTGLRISEALNLRVSDINNE--SLIVTGKGDKQRQVFILPVVKKCIQEYIKACPY- 177

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
             L+    LF G+RGK L        ++++RR L LP   + H  RHSFATHLL    D+
Sbjct: 178 --LDEAQHLFVGVRGKKLGRTYVANRLQKIRRMLNLPEILSPHAFRHSFATHLLQEDIDI 235

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
           RSIQ +LGH  L TTQIYT++N ++  +    +Y      + +K K
Sbjct: 236 RSIQQLLGHSSLETTQIYTHLNYQDVFN----MYKNFQQGLEKKSK 277


>gi|206896382|ref|YP_002246413.1| tyrosine recombinase XerD [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738999|gb|ACI18077.1| tyrosine recombinase XerD [Coprothermobacter proteolyticus DSM
           5265]
          Length = 288

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 140/299 (46%), Gaps = 20/299 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + + L +++G S  T+++Y  D  QF  +    T E+ +   I ++     R+++  
Sbjct: 2   LELYHEYL-VKKGKSPHTIKNYISDLMQFQKWFEESTGEQFSPGKITEIDVRSYRSYLIN 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R   +   S+KR L  I+ FL +  K+ I +++    +         PR+L+EK+ L L
Sbjct: 61  IRQ--LKPSSIKRKLEAIRKFLDWTVKQDIISKNPAKEVEAPASVTLPPRSLSEKEFLRL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKG 194
             +     +         + AI  +L   G+R+SE  SL   ++   +     +   GKG
Sbjct: 119 RRSFYKEGNER-------DIAIFEVLANTGIRVSELCSLKLSDVQISERKGKLIVRYGKG 171

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K R VPL    RKA+ EY      + N      LF G RG PL P    R I++  R  
Sbjct: 172 QKYREVPLNSDARKALNEYLKSRADENNER----LFLGERG-PLTPSGVFRIIKRYARDA 226

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           G+    + H LRH+FA  LL +G D+ ++Q ILGH  L+TT +Y   +     + + +I
Sbjct: 227 GVE--VSPHQLRHTFARRLLQSGADIVTVQQILGHANLNTTAVYLKPDYAEQEEAVEKI 283


>gi|315506755|ref|YP_004085642.1| tyrosine recombinase xerd [Micromonospora sp. L5]
 gi|315413374|gb|ADU11491.1| tyrosine recombinase XerD [Micromonospora sp. L5]
          Length = 323

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 89/325 (27%), Positives = 144/325 (44%), Gaps = 21/325 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            +  L +  + +L +L +ERGLS  TL SY  D  ++L  LA        +  +      
Sbjct: 8   PAPALRRAVRTYLDHLTVERGLSANTLASYRRDLDRYLATLAA-----AGVDDLAAAGPA 62

Query: 70  EIRAFISKRRTQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           ++ A +++ R        +   S  R+ S ++   ++  +  +       ++R       
Sbjct: 63  QVEAHLARLRAGDDDHPPLAVSSAARAASAVRGLHRFALREGLAGADPSRDVRPPAPPRR 122

Query: 125 LPRALNEKQALTLVDN-VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           LPRAL     L L++       S +      R+ A+L  LYG G RISEA+     ++  
Sbjct: 123 LPRALPVDAVLRLLEAAGTPGASGDAAARALRDRALLEFLYGTGARISEAVGAAVDDLDL 182

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPG 241
           D  T+ ++GKG + R+VP+      A+  +       L         +F   RG PL   
Sbjct: 183 DAGTVLLRGKGGRTRLVPVGGYAADALRAWLVRGRPALLAAGRGTHAVFVNARGGPLTRQ 242

Query: 242 VFQRYIRQLRRYLGLPLS----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
                +R      GLP+      + HTLRHS+ATHLL  G D+R +Q +LGH  ++TTQ+
Sbjct: 243 GAWAVLRTAAARAGLPVDGPDAVSPHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQV 302

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSIT 322
           YT V  +     + E+Y   HP   
Sbjct: 303 YTLVTVER----LREVYATAHPRAR 323


>gi|255026829|ref|ZP_05298815.1| hypothetical protein LmonocytFSL_11776 [Listeria monocytogenes FSL
           J2-003]
          Length = 259

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 68/267 (25%), Positives = 128/267 (47%), Gaps = 10/267 (3%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           +  I T +Q+++ ++R ++++ + +     ++ R +S ++SF  +L +  +  E+    +
Sbjct: 1   EQAITTYQQVTFLDVRIYLTELKQKSFSRTTVARKISSLRSFYTFLLRENVINENPFTYV 60

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
            + K    LP+    ++   L   V      + + +  R+  +L +LYG G+R+SE   +
Sbjct: 61  SHAKNQLRLPKFFYSEEMEALFQVVY----EDNETLTLRDRVLLEVLYGTGIRVSECAGI 116

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIR 234
              ++      + I+GKG+K R VP       AI +Y       ++        L     
Sbjct: 117 LLPDLDTSYQAILIRGKGNKERYVPFGAYAEDAITDYLPERVNLMSRYKKSHDALLVNHY 176

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G PL     +  + ++     L      H LRH+FAT LL+NG D+R++Q +LGH  LS+
Sbjct: 177 GDPLTTRGIRYCLTKIISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSS 236

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           TQIYT+V  ++    +   Y + HP  
Sbjct: 237 TQIYTHVTKEH----LKSTYMKHHPRA 259


>gi|332974597|gb|EGK11517.1| site-specific tyrosine recombinase XerC [Kingella kingae ATCC
           23330]
          Length = 302

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 88/315 (27%), Positives = 135/315 (42%), Gaps = 21/315 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++       + +L   + +   S  TL +Y  D +Q    L+               +  
Sbjct: 1   MTTSFFAHTEAYLLQ-QTQLNRSAHTLVAYRRDLQQLHTLLSEQNTPP---------TRQ 50

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +    +     Q +   SL R L+  K +  YL        S I  +R  K    LPRA+
Sbjct: 51  DFSRALKTLSQQGLNASSLARKLTVWKQYALYLCDIGYWEHSPIATLRAPKLPQRLPRAI 110

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           + +    L++     +      +  R+ AI+ L YG GLR+SE  +L   +I      + 
Sbjct: 111 DREPLGALLN----QSPESDDTLAIRDHAIVELFYGSGLRLSELRALNLHDIELTAGWVS 166

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           +QGKG+K R VPL      A+  +   CP     N +  LF G  G  L+       +  
Sbjct: 167 VQGKGNKQRQVPLTRHCIDALHTWLANCP---AQNGETALFTGRYGSRLSTRQIASRLAF 223

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G     T H LRHSFA HLL    DLR++Q +LGH  LS+TQIYT ++     D 
Sbjct: 224 WAEQRGSLQHITPHMLRHSFAGHLLQASQDLRAVQDLLGHSSLSSTQIYTKLD----LDH 279

Query: 310 MMEIYDQTHPSITQK 324
           + ++YDQ HP   ++
Sbjct: 280 LAQVYDQAHPRARRQ 294


>gi|300855279|ref|YP_003780263.1| putative site-specific recombinase [Clostridium ljungdahlii DSM
           13528]
 gi|300435394|gb|ADK15161.1| predicted site-specific recombinase [Clostridium ljungdahlii DSM
           13528]
          Length = 328

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 91/324 (28%), Positives = 151/324 (46%), Gaps = 27/324 (8%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE--------E 56
           NL  I + EL +   ++L  L   RG SK T   Y+ D   F  FL  Y          E
Sbjct: 4   NLSNIYNPELPQCLNDFLNYLGTIRGKSKNTQDGYQVDLTMFFRFLKIYRGIVKENYEFE 63

Query: 57  KITIQTI-----RQLSYTEIRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITT 109
            I I  I     R+++ +++ AFIS     +  G+ +  R ++ +KSF KYL  + K+  
Sbjct: 64  NIDISDINTDFIRKITLSDLYAFISFAENYRNNGNYARARKVACLKSFFKYLFSKAKLID 123

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
            +  L + + K     P  L+ K++  L++++              +  I+     CG+R
Sbjct: 124 TNPALELESPKIDKRNPIYLSLKESKILLNSIDGKFKER-------DYCIITFFLNCGMR 176

Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-P 228
           +SE  S+    I +D  TL + GKG+K R + L  +   A+  Y ++   D +       
Sbjct: 177 LSELCSINISKIKED--TLTVVGKGNKERTIYLNRACLTALNNYLEIRNKDYDKIKDKDA 234

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNG-GDLRSIQSI 286
           LF       +N    +  +++  +  GL  +  T H LRH+ AT +   G  D+RS+Q I
Sbjct: 235 LFLSKNHTRINKRSVEMMLKKYLKNAGLDSNKYTPHKLRHTAATLMYKYGNVDIRSLQKI 294

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWM 310
           LGH  +STTQIYT+V+ +   + +
Sbjct: 295 LGHENVSTTQIYTHVDDEQLREAV 318


>gi|312875927|ref|ZP_07735917.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797408|gb|EFR13747.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 325

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 84/318 (26%), Positives = 151/318 (47%), Gaps = 35/318 (11%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-----------------KITIQT 62
           ++L  +   +  S  T++ Y  D R FL +L                          I+ 
Sbjct: 12  DFLNYMITIKNKSPNTIKEYYYDLRTFLRYLKAKDLNILSQIEKIEDLENIDVSNFEIEK 71

Query: 63  IRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLK 120
           ++ L+ + +  + S   T+   G  +  R ++ I+SF KYL  + K+  ++   ++ + K
Sbjct: 72  LKTLTLSNLYEYFSFLATRFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPK 131

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                PR L   ++  L+ ++              + AI+ L   CGLR+SE +++   +
Sbjct: 132 LGKRNPRYLTLDESKKLLSSIDGENKER-------DFAIITLFLNCGLRLSELVNINLSD 184

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I DD   LRI GKG+K RI+ L  + + AI  Y  + P +  +  +  LF   R K ++ 
Sbjct: 185 IKDD--MLRIVGKGNKERIIYLNKACKDAIENYLKVRPTE-GVKDKDALFLSERKKRISR 241

Query: 241 GVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
              Q  + +  +  G+     +AH LRH+ AT +  +G  D+RS+Q+ILGH  +STT+IY
Sbjct: 242 RTVQYIVEKYVKMAGINQKKISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIY 301

Query: 299 TNVNSKNGGDWMMEIYDQ 316
           T+VN     D + + +++
Sbjct: 302 THVND----DDIKKAFEK 315


>gi|312793576|ref|YP_004026499.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180716|gb|ADQ40886.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 327

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 84/318 (26%), Positives = 151/318 (47%), Gaps = 35/318 (11%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-----------------KITIQT 62
           ++L  +   +  S  T++ Y  D R FL +L                          I+ 
Sbjct: 12  DFLNYMITIKNKSPNTIKEYYYDLRTFLRYLKAKDLNILSQIEKIEDLENIDVSNFEIEK 71

Query: 63  IRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLK 120
           ++ L+ + +  + S   T+   G  +  R ++ I+SF KYL  + K+  ++   ++ + K
Sbjct: 72  LKTLTLSNLYEYFSFLATRFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPK 131

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                PR L   ++  L+ ++              + AI+ L   CGLR+SE +++   +
Sbjct: 132 LGKRNPRYLTLDESKKLLSSIDGENKER-------DFAIITLFLNCGLRLSELVNINLSD 184

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I DD   LRI GKG+K RI+ L  + + AI  Y  + P +  +  +  LF   R K ++ 
Sbjct: 185 IKDD--MLRIVGKGNKERIIYLNKACKDAIENYLKVRPTE-GVKDKDALFLSERKKRISR 241

Query: 241 GVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
              Q  + +  +  G+     +AH LRH+ AT +  +G  D+RS+Q+ILGH  +STT+IY
Sbjct: 242 RTVQYIVEKYVKMAGINQKKISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIY 301

Query: 299 TNVNSKNGGDWMMEIYDQ 316
           T+VN     D + + +++
Sbjct: 302 THVND----DDIKKAFEK 315


>gi|257892241|ref|ZP_05671894.1| phage integrase [Enterococcus faecium 1,231,408]
 gi|257828620|gb|EEV55227.1| phage integrase [Enterococcus faecium 1,231,408]
          Length = 223

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 77/232 (33%), Positives = 123/232 (53%), Gaps = 10/232 (4%)

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +S ++ F ++L++ +IT    + ++   KK+  LP  L   +   L++         TK
Sbjct: 1   MISSLRRFHQFLRQERITDHDPMQHIDTPKKAQKLPSTLTLTEVEKLIE-----APDTTK 55

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
            +  R+ AIL ++Y  G+R+SE + L   ++      ++  GKGDK RI+PL     + +
Sbjct: 56  TLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGKGDKERIIPLGDYAIQWL 115

Query: 211 LEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
             Y D     L  +  ++ +F    GK L+     + ++QL R  G+    T HTLRHSF
Sbjct: 116 ERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVREAGIYKEVTPHTLRHSF 175

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           ATHLL NG DLR++Q +LGH  +STTQIYT++  K     M ++Y Q  P  
Sbjct: 176 ATHLLENGADLRTVQELLGHADISTTQIYTHITKKR----MTDVYKQHFPRA 223


>gi|296125451|ref|YP_003632703.1| integrase family protein [Brachyspira murdochii DSM 12563]
 gi|296017267|gb|ADG70504.1| integrase family protein [Brachyspira murdochii DSM 12563]
          Length = 310

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 86/308 (27%), Positives = 154/308 (50%), Gaps = 21/308 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL E  ++LQ L      +  T+ SY  D +++  FL            +    +  +R 
Sbjct: 17  LLDEFSDYLQTL----NFAAHTINSYNKDLKEYFNFLESKNI------LLDNADHYSVRD 66

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++  +++ + + ++ R LS IK F KYL +  ++ ++ I++M++ K+   + + L+   
Sbjct: 67  YLTFLKSKSLTNSTMSRHLSSIKKFYKYLIRNGLSDKTRIVDMKSPKREEHIAKFLSLDD 126

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              +     L    +  +   R+  +   +Y  GLR+SE  SL    I     TLRI GK
Sbjct: 127 IDRI-----LAIDDDGDFTLLRDKMMALFMYAIGLRVSELASLRLSMIKKGDETLRICGK 181

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLR 251
           G K+R +P+LP V +    Y +          Q    LF    GKP++    +  +++L 
Sbjct: 182 GSKVRDIPVLPVVYENWDIYMEKRRMIQKEYSQNNDYLFINRFGKPISDRSIRTSMKRLI 241

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R   + +  + HTLRH+FATHLL+N  ++R +Q +LGH  ++TTQ YT+V +      + 
Sbjct: 242 RNANISMDFSPHTLRHTFATHLLNNDAEIRGVQELLGHETIATTQRYTHVTNSR----LF 297

Query: 312 EIYDQTHP 319
           E+Y++ HP
Sbjct: 298 EVYNRFHP 305


>gi|297183673|gb|ADI19798.1| site-specific recombinase xerd [uncultured alpha proteobacterium
           EB000_37G09]
          Length = 302

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 95/309 (30%), Positives = 145/309 (46%), Gaps = 19/309 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L  ERG+S+ TL  Y+ D       +A          +   ++  +IR  + K  
Sbjct: 12  HFLSALAAERGVSENTLFGYKNDLMALHDSMAV---------SFVVMTADDIRQSVQKFY 62

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +  R++ R LS ++ F  ++    I  ++  L + N K  + LP++LNE    +L+ 
Sbjct: 63  IEGLAARTVSRRLSAVRQFAGWMVSDHIRQDNPSLFLDNPKLPDPLPKSLNEADVSSLI- 121

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                 S      D    A L L+Y  GLRISE LSL  Q+   D+  L I+GKG + R+
Sbjct: 122 ---TACSKLEPPYDLLMQAGLELMYSAGLRISELLSLRLQDFTADKDMLLIRGKGGRERM 178

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-L 258
           VPL          + D    D        L  G R + +    F   ++Q+ R+  L   
Sbjct: 179 VPLTAIAIATARRWRDARDADGPDAETDQL-LGYRSQEMTRQKFSLLLKQVARHADLDER 237

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             +AH LRHSFATHLL+ G DLRS+Q +LGH  ++TTQIYT    +   D +  +    H
Sbjct: 238 KVSAHVLRHSFATHLLNRGADLRSLQMLLGHADIATTQIYT----RTRQDRLAGLVSDAH 293

Query: 319 PSITQKDKK 327
           P      K+
Sbjct: 294 PLAESDRKE 302


>gi|225012642|ref|ZP_03703077.1| integrase family protein [Flavobacteria bacterium MS024-2A]
 gi|225003175|gb|EEG41150.1| integrase family protein [Flavobacteria bacterium MS024-2A]
          Length = 298

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 74/306 (24%), Positives = 140/306 (45%), Gaps = 12/306 (3%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +++  + +E+  S  T ++Y+ +  QF  FL     +     ++ ++SY+EIR++I    
Sbjct: 5   SFIDYILLEKKSSLHTQKAYQSNLEQFEAFLLSEGSK----ASLEEVSYSEIRSWIVSLI 60

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +    R++ R +S ++S+ K+L +      S +   + LK +  +    ++ +   L+D
Sbjct: 61  QKGNSTRTVNRKISVLRSYYKFLMRTGSIDSSPLKEHKALKMATQVQLPFSQDEVAQLLD 120

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           +          ++      IL L Y  G+R SE + L   N+   +  +++ GK +K R+
Sbjct: 121 SGHF----PDSYLGVLQKTILSLFYYTGIRRSELIELKLLNVDLSKGLIKVLGKRNKERL 176

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +PLLP ++  +    D    +     +   F   +G  L        +      +     
Sbjct: 177 IPLLPEIKVELQLMLDCQVRNNIDREEGLFFTTQQGFKLTDSFVYATVNDYFSKVSTKTK 236

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + H LRHSFATHLL  G DL SI+ +LGH  ++ TQ YT+    +    + E+Y   HP
Sbjct: 237 RSPHVLRHSFATHLLDQGADLNSIKDLLGHSSIAATQHYTH----SSMAKIKEVYKSAHP 292

Query: 320 SITQKD 325
              +  
Sbjct: 293 REKKNK 298


>gi|302866903|ref|YP_003835540.1| tyrosine recombinase XerD [Micromonospora aurantiaca ATCC 27029]
 gi|302569762|gb|ADL45964.1| tyrosine recombinase XerD [Micromonospora aurantiaca ATCC 27029]
          Length = 323

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 88/325 (27%), Positives = 144/325 (44%), Gaps = 21/325 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            +  L +  + +L +L +ERGLS  TL SY  D  ++L  LA        +  +      
Sbjct: 8   PAPALRRAVRTYLDHLTVERGLSANTLASYRRDLDRYLATLAA-----AGVDDLAAAGPA 62

Query: 70  EIRAFISKRRTQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           ++ A +++ R        +   S  R+ S ++   ++  +  +       ++R       
Sbjct: 63  QVEAHLARLRAGDDDHPPLAVSSAARAASAVRGLHRFALREGLAGADPSRDVRPPAPPRR 122

Query: 125 LPRALNEKQALTLVDN-VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           LPRAL     L L++       + +      R+ A+L  LYG G RISEA+     ++  
Sbjct: 123 LPRALPVDAVLRLLEAAGTPGATGDAAARALRDRALLEFLYGTGARISEAVGAAVDDLDL 182

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPG 241
           D  T+ ++GKG + R+VP+      A+  +       L         +F   RG PL   
Sbjct: 183 DAGTVLLRGKGGRTRLVPVGGYAADALRAWLVRGRPALLAAGRGTHAVFVNARGGPLTRQ 242

Query: 242 VFQRYIRQLRRYLGLPLS----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
                +R      GLP+      + HTLRHS+ATHLL  G D+R +Q +LGH  ++TTQ+
Sbjct: 243 GAWAVLRTAAARAGLPVDGPDAVSPHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQV 302

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSIT 322
           YT V  +     + E+Y   HP   
Sbjct: 303 YTLVTVER----LREVYATAHPRAR 323


>gi|167717571|ref|ZP_02400807.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           DM98]
          Length = 244

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 72/254 (28%), Positives = 133/254 (52%), Gaps = 21/254 (8%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +  RS+   LS  ++F ++  +      + +  +R  K++ +LP+AL+      L+D   
Sbjct: 1   MSARSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDTAALMDAPT 60

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-----------MDDQSTLRIQ 191
             T+   +     + AIL L Y  GLR++E + L  + +              ++ + ++
Sbjct: 61  AGTAESLR-----DHAILELFYSSGLRLAELIGLDIEYVKDGAYRSAGWLDLAEAEVTVR 115

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKGDK R VP+      A+  +  +    +  + + PLF  +RG  ++PGV +  +++  
Sbjct: 116 GKGDKERKVPVGRKALDALHAWLAVRGEFVKHDPR-PLFLSVRGNRMSPGVVRERVKRAA 174

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+P +   H LRHSFATH+L + GDLR++Q +LGH  +S TQ+YT+++ ++    + 
Sbjct: 175 LAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQH----LA 230

Query: 312 EIYDQTHPSITQKD 325
           +IYD  HP   ++D
Sbjct: 231 KIYDSAHPRAKKRD 244


>gi|312622379|ref|YP_004023992.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202846|gb|ADQ46173.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 328

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 83/318 (26%), Positives = 151/318 (47%), Gaps = 35/318 (11%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-----------------IQT 62
           ++L  +   +  S  T++ Y  D R FL +L       ++                 I+ 
Sbjct: 12  DFLNYMITIKNKSPNTIKEYYYDLRNFLRYLKAKDLNMLSQIEKIEDLENIDVSNFEIEK 71

Query: 63  IRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLK 120
           ++ L+ + +  + S   T    G  +  R ++ I+SF KYL  + K+  ++   ++ + K
Sbjct: 72  LKALTLSNLYEYFSFLATHFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPK 131

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                PR L   ++  L+  +              + AI+ +   CGLR+SE +++   +
Sbjct: 132 LGKRNPRYLTLDESKKLLSAIDGENKER-------DFAIITIFLNCGLRLSELVNINLSD 184

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I DD   LRI GKG+K RI+ L  + + AI  Y  + P +  +  +  LF   R K ++ 
Sbjct: 185 IKDD--MLRIVGKGNKERIIYLNKACKDAIENYLKVRPTE-GVKDKDALFLSERKKRISR 241

Query: 241 GVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
              Q  + +  +  G+     +AH LRH+ AT +  +G  D+RS+Q+ILGH  +STT+IY
Sbjct: 242 RTVQYIVEKYVKMAGINQKKISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIY 301

Query: 299 TNVNSKNGGDWMMEIYDQ 316
           T+VN     D + + +++
Sbjct: 302 THVND----DDIKKAFEK 315


>gi|228470279|ref|ZP_04055183.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Porphyromonas uenonis 60-3]
 gi|228308022|gb|EEK16897.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Porphyromonas uenonis 60-3]
          Length = 403

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 83/314 (26%), Positives = 150/314 (47%), Gaps = 15/314 (4%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +++ EL +    +++ L +ER  S LTL +Y      +   +    E             
Sbjct: 1   MLTQELEQTLDAFMEYLRLERNASPLTLTTYRPAIESY---MESALELATDEWRPSDADR 57

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R +I ++   ++   ++ ++LS ++SF KYL+ R   T +    ++  K+ ++LP  
Sbjct: 58  DLVRNWIMQQMDDELSSTTVNKNLSAVRSFYKYLQLRGHVTSNPTRYLKGPKREHTLPSF 117

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L + Q    +  + + T +   ++  R+  I+  +Y  GLR +E  SL  Q +     +L
Sbjct: 118 LTQAQIEEALATIPIETDN---FLSVRDRLIIETIYQTGLRRAEVASLKTQQVDLTAMSL 174

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R+ GKG K RIVP    +R+ + +Y  L   D  +      F  +  +PL+     + + 
Sbjct: 175 RVVGKGRKERIVPFGTDLREKMQDYITLR--DQKVGTSQYFFVTLECRPLSGADVYQVVH 232

Query: 249 QLRRYL-GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +    + GLP    AHTLRHSFAT +L+ G  + SI+ +LGH  L TT  YT+ + +   
Sbjct: 233 KALSVVPGLPRR-GAHTLRHSFATEMLNAGAPITSIKELLGHSNLETTTRYTHTSFEQ-- 289

Query: 308 DWMMEIYDQTHPSI 321
             + ++Y   HP  
Sbjct: 290 --LKQLY-HAHPRA 300


>gi|91215199|ref|ZP_01252171.1| putative site-specific recombinase [Psychroflexus torquis ATCC
           700755]
 gi|91186804|gb|EAS73175.1| putative site-specific recombinase [Psychroflexus torquis ATCC
           700755]
          Length = 296

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 82/303 (27%), Positives = 148/303 (48%), Gaps = 15/303 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             ++L+ L +E+  +KLT+ SY  D  QF +F+     E    + + +++Y  IR +I  
Sbjct: 4   IDSFLEYLLLEKKYAKLTIISYATDLAQFQVFI----LETYDTREMSEVNYPMIRQWIVG 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +  +++ R LS +K+F K+L K ++   + ++  ++LK       A +  +   +
Sbjct: 60  FIELGLTHKTINRKLSTLKTFFKFLLKIQVIAVNPMVQHKSLKLPKRQQEAFSVLELEKV 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            D        +  +   R+  I+ LLY  G+R  E + L   ++   Q  L+++GK +K 
Sbjct: 120 SDYF-----EDVTFEGLRDHLIIELLYATGMRRQELIDLQLSSLDLKQQQLKVRGKRNKE 174

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R++PLL S+   I  Y       L    Q  LF   +GK + P +  R +      +   
Sbjct: 175 RLIPLLDSISFLIERYLQERSVLLPQGSQ--LFVTSKGKAIYPNLVYRVVHSYFEKVSTK 232

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRH+FATHLL  G D+ +I+ +LGH  L++T++YT+ N K     + + +   
Sbjct: 233 KKLSPHLLRHAFATHLLDKGADISAIKDLLGHSSLASTEVYTHSNFKE----LSKAHQAA 288

Query: 318 HPS 320
           HP 
Sbjct: 289 HPR 291


>gi|269121304|ref|YP_003309481.1| integrase family protein [Sebaldella termitidis ATCC 33386]
 gi|268615182|gb|ACZ09550.1| integrase family protein [Sebaldella termitidis ATCC 33386]
          Length = 304

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 78/314 (24%), Positives = 142/314 (45%), Gaps = 42/314 (13%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L  E+G S+ TL SY+ D   F   +          +  + +   E+  ++ K  
Sbjct: 9   EFLDYLRYEKGSSENTLSSYKRDLNLFFSEV---------PKNFQSIEDEEVIEYVDKL- 58

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           ++ +   ++ R ++ I++F K+    K  T++   +++NLK+   LP  L   +   ++D
Sbjct: 59  SKTVKRNTVLRKIASIRAFYKFCYINKYITDNPTESLKNLKREFKLPEVLKLSEIKDIID 118

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQGKGDKIR 198
            +             R+  I+ +L   G RISE L+L  ++    D   +R+ GKG K R
Sbjct: 119 AI------PNTPEGVRDKIIIKILVATGARISEVLTLDIKDVENQDYEFIRVLGKGSKYR 172

Query: 199 IVPLLPSVRKAILEYY----------------DLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           ++P+   + + I  Y                 +         ++  LF G R        
Sbjct: 173 LIPIYSQLEEEIKAYIENDRKILVLERKEKESENKNKKKGHELEYKLFLGTR-----REN 227

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           F + +++  +   +  +   H  RHS AT L++NG D+R +Q ILGH  +STT+IYT+V 
Sbjct: 228 FWKRLKKYAKNAKIEKNVYPHIFRHSVATMLINNGADIRIVQEILGHVNISTTEIYTHV- 286

Query: 303 SKNGGDWMMEIYDQ 316
              G   + EIY++
Sbjct: 287 ---GKRELKEIYNK 297


>gi|42520949|ref|NP_966864.1| phage integrase family site specific recombinase [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|42410690|gb|AAS14798.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 328

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 87/314 (27%), Positives = 152/314 (48%), Gaps = 25/314 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  L  ER  ++ TL+SY  D  QF  FL        +  T+  ++ T I+ ++    T
Sbjct: 18  YIDALASERSAAQNTLESYRSDLHQFEEFLLE------SGTTLVGVNKTNIKDYVKSLCT 71

Query: 81  QK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNI----LNMRNLKKSNSLPRALNEKQAL 135
           QK     S+ R +S +K+F K L    I   +        ++N K S  LP+ L+ ++  
Sbjct: 72  QKKYKSSSISRKISAMKNFYKCLFNNGIIDFNPAPANDAELKNPKVSRPLPKYLSVEEIF 131

Query: 136 TLVDNVLLHTSHETKWIDARNS-AILYLLYGCGLRISEALSLTPQ------NIMDDQSTL 188
            L+D V    S   K I ++   AIL +LY  G+R+SE +S+         N  + +  +
Sbjct: 132 LLIDTVRKSASESNKEISSKRLCAILDILYSSGMRVSELISMKLCEVSHLINSNNKECYI 191

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGK-PLNPGVFQRY 246
            I+GK  + R +       +++  Y  +    ++   +   LF G +   P+      + 
Sbjct: 192 IIKGKSGRERQILFNEQALQSLRNYLSVRDNLISKEKESDWLFPGDKPNKPITRQRVGQL 251

Query: 247 IRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +++L R   +     + H +RHSFATHLL++G ++  IQ +LGH  LSTTQIYT++ ++ 
Sbjct: 252 MKELARKCNIDENKISPHVVRHSFATHLLNSGANIVLIQKVLGHTNLSTTQIYTHIANEK 311

Query: 306 GGDWMMEIYDQTHP 319
             D + +    +HP
Sbjct: 312 LKDKLAD----SHP 321


>gi|154249762|ref|YP_001410587.1| integrase family protein [Fervidobacterium nodosum Rt17-B1]
 gi|154153698|gb|ABS60930.1| integrase family protein [Fervidobacterium nodosum Rt17-B1]
          Length = 290

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 72/307 (23%), Positives = 148/307 (48%), Gaps = 32/307 (10%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
            LL+  +++L ++   R  S+ T+++Y  D R+F  ++          +  + +  +++ 
Sbjct: 8   ALLRTYEDYLVHV---RRSSENTVKAYIKDIRRFFEYIQ---------KPPKDIVRSDVE 55

Query: 73  AFISKRRT-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
            F+           ++ + ++ R +S +K+   YL+   +  E+    +R+ +    +P 
Sbjct: 56  KFVKALSKGEITGGEVTETTISRYISSLKTIFDYLQLIGVVNENPTERVRHPRLRKKIPS 115

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L  K+   +++             + +   I+ +LY CGLR+SE  +L  +++      
Sbjct: 116 FLTMKEVKAMINTFDEEK-------ELKYKTIISVLYFCGLRVSELCNLRVEDVSFYPPY 168

Query: 188 LR-IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           ++ + GKG+K R+VP+  S+   + +Y +     +        F   RGK ++P    R 
Sbjct: 169 IKVVMGKGNKDRLVPISDSIIPLLEKYVERYKPKV-------YFIESRGKSIHPATVFRI 221

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +++  +  G+      HTLRHSFATHL+ N  +++ +Q +LGH  LSTT IY +V  K  
Sbjct: 222 VKRAAQRAGINKKIHPHTLRHSFATHLIMNNVNVKIVQELLGHANLSTTSIYLHVADKEK 281

Query: 307 GDWMMEI 313
            D + ++
Sbjct: 282 FDAVKKL 288


>gi|242279145|ref|YP_002991274.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
 gi|242122039|gb|ACS79735.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
          Length = 307

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 92/315 (29%), Positives = 148/315 (46%), Gaps = 20/315 (6%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             + +LQ   +ER LS LTLQ+Y  D  QF   +     E I I          IR ++S
Sbjct: 6   AIKTFLQYCSLERSLSSLTLQAYRKDLSQFGETIDLNNVEVINI------DKESIRTYLS 59

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQAL 135
                    ++LKR L+ +KSF  +L++  +   S    +   + +S  LP+ + E    
Sbjct: 60  NI-NHNYKPKTLKRKLATLKSFFNFLEREDLIPFSPFRKLHIKIDRSKELPKIIKETSLS 118

Query: 136 TLVDNVLLHTSHETKWIDAR-----NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            ++    L          A      +  ++ LL+  G+R+SE  S++P  I      L I
Sbjct: 119 RILKYAYLEKEKFDHKSKAYREITRDICVIELLFATGIRVSELCSISPSEIDLKNKKLII 178

Query: 191 QGKGDKIRIVPLLPS-VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
            GKG+K R++PL  +   K + EY  L  + L+ +     F     KPL+    +R I++
Sbjct: 179 NGKGNKQRLIPLCENNSLKILKEYSLLYQYALHDSTSF--FLNRDLKPLSDQSVRRIIKK 236

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+  + T H  RH+ AT LL NG D+R+IQ++LGH  LS T+IYT+V+  +  D 
Sbjct: 237 YSEIAGVTETITPHMFRHTIATMLLENGVDIRNIQTLLGHSSLSVTEIYTHVSLSSQRDI 296

Query: 310 MMEIYDQTHPSITQK 324
           +     + HP    +
Sbjct: 297 LA----KKHPRRKIR 307


>gi|261366946|ref|ZP_05979829.1| tyrosine recombinase XerC [Subdoligranulum variabile DSM 15176]
 gi|282571064|gb|EFB76599.1| tyrosine recombinase XerC [Subdoligranulum variabile DSM 15176]
          Length = 359

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 83/328 (25%), Positives = 149/328 (45%), Gaps = 30/328 (9%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-------------KIT 59
           ++  +   +L  L+  +  S  T+  Y  D R F  ++                   KI 
Sbjct: 18  DIPDDVIEYLHYLDFVKLRSPRTVNGYYLDLRGFFRYMMIQWGRADATAKPEEIDLTKID 77

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRN 118
            + I  +   +I  ++   R+   G ++  R LS +K F  Y+  +    T+    N+  
Sbjct: 78  SKDIAGIGKRDIFGYLDYARSANNGSKARARKLSALKGFFGYMCTQVNKITQDPTENVSL 137

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
                +LP+ L E ++L L++N+             R+  I+ L   CG+R++E +S+  
Sbjct: 138 GAPKKTLPKYLTESESLELLNNIQSD-------FYERDFCIITLFLNCGMRLAELVSIDL 190

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KP 237
            +  DD  T+RI GKG K R+V L  + ++A+  Y  +    +NL+ +  LF   R  K 
Sbjct: 191 GDFRDD--TIRITGKGGKERLVYLNDACKQALERYAKVRGGLVNLSDKDALFVSKRTGKR 248

Query: 238 LNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           L     ++ + +  +  GL     + H LRH+ AT +   G D+ +++ ILGH  +STTQ
Sbjct: 249 LTARRVEQIVARCLQSAGLSGRGFSPHKLRHTAATLMYQGGVDMLALKEILGHENVSTTQ 308

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           IYT++N +   + +     Q  P   Q+
Sbjct: 309 IYTHINQQQLREAV-----QASPLARQR 331


>gi|167751075|ref|ZP_02423202.1| hypothetical protein EUBSIR_02060 [Eubacterium siraeum DSM 15702]
 gi|167655993|gb|EDS00123.1| hypothetical protein EUBSIR_02060 [Eubacterium siraeum DSM 15702]
          Length = 338

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 82/318 (25%), Positives = 136/318 (42%), Gaps = 24/318 (7%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E+   E       ++      + LS  T+ +Y  D  QF  F               +LS
Sbjct: 34  EVKMIEFKTHIDGFINYCRYHKKLSDKTISAYCIDLIQFRCFT-------------SELS 80

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLP 126
              +  +I     +    +++KR L+ +K+F  YL  R I   +    +  ++K+   LP
Sbjct: 81  KQSLWNYIEHL-NKSYKPKTVKRKLATLKAFTHYLLIRDIIDCNPFDKIETSIKEPVILP 139

Query: 127 RALNEKQALTLVD----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           + +       ++      +    +   K    RN+A+L LL+  G R++E  +L  Q++ 
Sbjct: 140 KTIPLDTIGEILCFAYTQIEKSNTDYKKNSAIRNAAVLELLFATGARVAEICNLHSQDVD 199

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
               ++++ GKG K RI+P+  +    IL  Y     +  ++     F    GK L    
Sbjct: 200 FIGKSVKLYGKGSKERIIPIENTSVLTILSDYYF-IHEEKISDCGYFFVNKYGKRLTEQS 258

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +  I    +  G+ +  T H  RHSFAT LL    D+R IQ +LGH  ++TTQIYT+V 
Sbjct: 259 VRCMINSYCQTCGISMHITPHMFRHSFATLLLEQDVDIRYIQKLLGHSSITTTQIYTHVT 318

Query: 303 SKNGGDWMMEIYDQTHPS 320
           S        EI    HP 
Sbjct: 319 SAKQ----KEIIKTKHPR 332


>gi|291530097|emb|CBK95682.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 338

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 82/318 (25%), Positives = 136/318 (42%), Gaps = 24/318 (7%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E+   E       ++      + LS  T+ +Y  D  QF  F               +LS
Sbjct: 34  EVKMIEFKTHIDGFINYCRYHKKLSDKTISAYCIDLIQFRCFT-------------SELS 80

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLP 126
              +  +I     +    +++KR L+ +K+F  YL  R I   +    +  ++K+   LP
Sbjct: 81  KQSLWNYIEHL-NKSYKPKTVKRKLATLKAFTHYLLIRDIIDCNPFDKIETSIKEPVILP 139

Query: 127 RALNEKQALTLVD----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           + +       ++      +    +   K    RN+A+L LL+  G R++E  +L  Q++ 
Sbjct: 140 KTIPLDTIGEILCFAYTQIEKSNTDYKKNSAIRNAAVLELLFATGARVAEICNLHSQDVD 199

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
               ++++ GKG K RI+P+  +    IL  Y     +  ++     F    GK L    
Sbjct: 200 FIGKSVKLYGKGSKERIIPIENTSVLTILSDYYF-IHEEKISDCGYFFVNKYGKRLTEQS 258

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +  I    +  G+ +  T H  RHSFAT LL    D+R IQ +LGH  ++TTQIYT+V 
Sbjct: 259 VRCMINSYCQTCGISMHITPHMFRHSFATLLLEQDVDIRYIQKLLGHSSITTTQIYTHVT 318

Query: 303 SKNGGDWMMEIYDQTHPS 320
           S        EI    HP 
Sbjct: 319 SAKQ----KEIIKTKHPR 332


>gi|87199919|ref|YP_497176.1| phage integrase [Novosphingobium aromaticivorans DSM 12444]
 gi|87135600|gb|ABD26342.1| phage integrase [Novosphingobium aromaticivorans DSM 12444]
          Length = 293

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 86/308 (27%), Positives = 130/308 (42%), Gaps = 25/308 (8%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI-RAFI 75
             +N+L  L  +RG +  TL +Y  D                 I  +      ++ R  I
Sbjct: 8   AVENFLAMLAAQRGAAANTLAAYRRDLAGAAEV----------IGPLATAGREDLARLAI 57

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +      +   SL R  S ++ F  +L    +  E     +   K    LPR L+  Q  
Sbjct: 58  AW---SDLAASSLARKSSALRQFYGFLVDEGMREEDPSSALPRPKTRRPLPRLLDHGQVE 114

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L           T        A+L LLYG GLR +E +SL    I  D   L I GKG 
Sbjct: 115 ALFRTAEEDARSGTPEAARM-LALLELLYGSGLRATELVSLPLAAIPRDAPLLTITGKGG 173

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
             R+VP+     +A+ ++               +F   RG  L+     + +R L    G
Sbjct: 174 VQRMVPVSARATRALADWLVAR-----GKGGRFVFPSPRGGHLSRVRLFQLLRDLALRAG 228

Query: 256 L-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           L P   + H LRH+FATHLL  G DLR +Q++LGH  ++TTQIYT+V++      ++ + 
Sbjct: 229 LDPEKVSPHVLRHAFATHLLEGGADLRVLQTLLGHADIATTQIYTHVDAAR----LVTLV 284

Query: 315 DQTHPSIT 322
           ++ HP   
Sbjct: 285 NERHPLAR 292


>gi|146329464|ref|YP_001208978.1| site-specific recombinase XerC [Dichelobacter nodosus VCS1703A]
 gi|146232934|gb|ABQ13912.1| site-specific recombinase XerC [Dichelobacter nodosus VCS1703A]
          Length = 302

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 73/312 (23%), Positives = 151/312 (48%), Gaps = 20/312 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L+ ERGLS  T  +Y     Q   +             + Q     ++++++ 
Sbjct: 2   IEAFLHALQYERGLSPQTCTTYRYSLNQAQRYFHG---------ELEQQKANALQSYLNH 52

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK-KSNSLPRALNEKQALT 136
           +R ++I   +L R  + ++++  +LK+ +   ++  + ++  K +  +LP+ L+  +   
Sbjct: 53  QRRKRIAPITLNRHRAALRTYFSWLKQTRQRLDNPAMALQIPKIRKKTLPKTLSIDEI-- 110

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
               +LL   +  + +  RN A+  L Y  GLR++E +++  ++       L I GKG  
Sbjct: 111 ---TILLAPPNSEEPLTLRNHALFELAYSAGLRLAELIAINWRDCARLPDELIITGKGGY 167

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R + +    + A+ ++ ++    +    +  LF   +G+ ++P   +  + +  +    
Sbjct: 168 QRRIFIGTHAKMALSKWLNVR-AQIAAPEEKALFVSNQGRRIHPRSVEYILHRYAQSRLP 226

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               T H LRHSFA H+L   GD+R++Q +LGH R+STTQIYT ++ +     + ++YD+
Sbjct: 227 NRHITPHMLRHSFAGHMLQACGDIRAVQDLLGHQRISTTQIYTFLDFQQ----LSKVYDR 282

Query: 317 THPSITQKDKKN 328
            HP   +    N
Sbjct: 283 AHPRAQKNHASN 294


>gi|328948451|ref|YP_004365788.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489]
 gi|328448775|gb|AEB14491.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489]
          Length = 297

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 149/303 (49%), Gaps = 18/303 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q +   L       KLT ++Y    ++FL +L            + +++   +  + + 
Sbjct: 7   LQEFYSELLFVENHGKLTAETYLICVQEFLDYLEK------NETPLEKVTVQSLLYYTAF 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R+T    + +L + LS ++ F  +L ++KI  E+    +   K S +LP+ L  +Q  +L
Sbjct: 61  RKTSGRKEITLAKDLSALRIFGSFLVRKKIWIENFAHEIGKPKVSRALPKVLEVEQVDSL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +      +    K +  R+ A+  ++Y CGLRISEA SL   N+  D++ + ++GKG K 
Sbjct: 121 L-----ASIDVKKPLGIRDRALYEVIYSCGLRISEACSLLIANVHFDENLILVRGKGSKE 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R+VP        + ++          +  +P +F   +G P++     +  + + +  G+
Sbjct: 176 RLVPFGEDAAFWLKKWIFEIRPGFVGSRIIPEVFVNSKGNPISRKGIWKNFKAMGKKTGI 235

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 HTLRHSFATHLLS G DLRS+Q +LGH  LSTTQIYT+++       + E +  
Sbjct: 236 EAKV--HTLRHSFATHLLSGGADLRSVQELLGHSDLSTTQIYTHIDDSR----LEESHRD 289

Query: 317 THP 319
             P
Sbjct: 290 FFP 292


>gi|85373824|ref|YP_457886.1| integrase [Erythrobacter litoralis HTCC2594]
 gi|123099544|sp|Q2NB52|XERC_ERYLH RecName: Full=Tyrosine recombinase xerC
 gi|84786907|gb|ABC63089.1| integrase [Erythrobacter litoralis HTCC2594]
          Length = 306

 Score =  212 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 76/309 (24%), Positives = 133/309 (43%), Gaps = 24/309 (7%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
              + +L  L  ERG +  TL +Y  D              +    +    ++++     
Sbjct: 6   AAIEEFLAMLAAERGAAANTLAAYRRDLEGAEALAGDLATARRPALSRLGSAWSD----- 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                  +   ++ R  S ++ F  +L    +  +     +        LP+ L+ K+  
Sbjct: 61  -------LAPATVARKASALRQFYGFLVDEGLREDDPSSALPRPTMRRPLPKTLSHKEVE 113

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L +         ++ +  R  A++ LLYG GLR +E +SL    +  D   L + GKG 
Sbjct: 114 RLFEQAEREA-ETSRPLPVRLLALIELLYGSGLRATELVSLPVAAVPRDAPFLTVTGKGG 172

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
             R+VP+    R+A+  +  L   D        LF   R   +      + +++L     
Sbjct: 173 VARMVPVSGRAREALQSWMGLRGSD-----SPYLFPS-RKAHITRVRLFQMLKELAVRAD 226

Query: 256 L-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           L P   + H LRH+FATHLL  G DLR +Q++LGH  +STTQIYT+V++      ++ + 
Sbjct: 227 LNPDKVSPHVLRHAFATHLLEGGADLRVLQTLLGHADISTTQIYTHVDAAR----LVALV 282

Query: 315 DQTHPSITQ 323
           ++ HP   +
Sbjct: 283 NERHPLSAR 291


>gi|330993163|ref|ZP_08317100.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
 gi|329759714|gb|EGG76221.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
          Length = 349

 Score =  212 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 108/341 (31%), Positives = 155/341 (45%), Gaps = 28/341 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+      +        R  +L  +E ER  S LTL +Y  D  +FL FL  +      +
Sbjct: 10  MKTGIGQAMADMMATGARDAFLHWMETERRASPLTLAAYRGDLDRFLAFLVGHLGAGPDL 69

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSL----------KRSLSGIKSFLKYLKKRKITTE 110
             +  LS  ++RA+++      +  R             R +S ++SF +Y   R    +
Sbjct: 70  AALAGLSLADLRAWLAHEHAAALSGRRATTQDRAARTRARRVSALRSFYRY-LARYHGVD 128

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
           +    +    ++           A  L     +     T     R+ A+  LLYGCGLRI
Sbjct: 129 NPAPGLLATPRTRRP-LPRPLPTAQALDVPEGVADIAHTPLARVRDGALFMLLYGCGLRI 187

Query: 171 SEALSLTPQNIMDDQ---------STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           SEAL L  +++   Q           LRIQGKG + R+VP+LP V  A+  +  + P   
Sbjct: 188 SEALGLDVRDLDRAQALGEGTKGDGVLRIQGKGGRERMVPVLPQVMAALRRWRGVHPL-- 245

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
                 PLF G+RG  L  G+ QR +R  R   GLP   T H LRHSFATHL+  G DLR
Sbjct: 246 -PQADAPLFVGVRGGRLQAGIAQRAMRTWRHMAGLPEHATPHALRHSFATHLMEGGADLR 304

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
            IQ +LGH  LSTTQ YT  +       +M+++ + HP  T
Sbjct: 305 VIQDLLGHASLSTTQRYTLADEAR----LMDVWTRAHPHAT 341


>gi|309775481|ref|ZP_07670483.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916777|gb|EFP62515.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53]
          Length = 323

 Score =  212 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 89/312 (28%), Positives = 141/312 (45%), Gaps = 20/312 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +  Q++L  ++     +  T+ SY+ D +++ ++L    +     Q +  +   +I++
Sbjct: 3   IHEALQDYLHYIQAVDQKALATIHSYQQDLQEYEVWLIGKHK-----QVMEDILPQDIQS 57

Query: 74  FISKRRTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           F+S+              S+   L+ I  F +Y+  +  T     +++R  KK   LP  
Sbjct: 58  FLSELEDGQKGEDGRKRSSVNHMLTSIHMFHRYITMQHPTILDPSIHLRGGKKEQQLPLY 117

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
            N      L+D+                 AIL LLYGCGLR+SE   L    +  +Q  L
Sbjct: 118 FNPHDIERLLDSF------GEDERSLYQKAILELLYGCGLRVSEVCELRLNQVHLEQGYL 171

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R+ GKGDK R+VP+      A+  Y               +F   RG  L        I+
Sbjct: 172 RVIGKGDKERMVPMHKRCVLALRVYVTQIRPGWEKRKSTRVFINSRGNILTRQYVHTLIK 231

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           Q    L L    +AH+ RHSFATHLL  G DLR +Q +LGH  ++TTQIYT+V ++    
Sbjct: 232 QRLHMLNLDERLSAHSFRHSFATHLLDGGADLRVVQELLGHRDIATTQIYTHVQNRR--- 288

Query: 309 WMMEIYDQTHPS 320
            + E  +  HP 
Sbjct: 289 -LKEAIESYHPR 299


>gi|257125886|ref|YP_003164000.1| integrase family protein [Leptotrichia buccalis C-1013-b]
 gi|257049825|gb|ACV39009.1| integrase family protein [Leptotrichia buccalis C-1013-b]
          Length = 356

 Score =  212 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 84/343 (24%), Positives = 144/343 (41%), Gaps = 46/343 (13%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L+     +L   E+  G S  T++ Y  D  QF+ +L  Y +    I    ++     R+
Sbjct: 27  LVMYVDKFLYYEEVILGKSFNTIRGYRRDLLQFMEYLDEYEK----IHNFEEIEMMTFRS 82

Query: 74  FISKRRTQK---------------------------------IGDRSLKRSLSGIKSFLK 100
           FI+   + K                                 +  RS+ R +S +++F K
Sbjct: 83  FIAYLNSPKRLMENDKNKTENSENLKSIKNLKKCKKKAKPKPVSRRSINRKISALRTFFK 142

Query: 101 YLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
           YL++  +   +    +   K    LP  LN         N L H  +  K    R+  I+
Sbjct: 143 YLQEINVIETNKASYISMPKFEKELPNVLNRDDL-----NKLRHVINTEKITGIRDRLII 197

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
            LLY  GLR  E ++L+   I  ++  +R+ GKG+K R+     + +K +++Y D     
Sbjct: 198 ELLYSSGLRSIELINLSEFMIDIEEREIRVIGKGEKERVTFFSENAKKWLIKYIDEKKKQ 257

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
                +  L    +GK L     +R I       G+    T H  RHSFA  LL+NG ++
Sbjct: 258 YENYTREVLIVNSKGKKLTTRSLRRLISGHVHEAGIEKEITPHVFRHSFAMELLNNGVEI 317

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
           + +Q ++GH  ++ TQ+YT+VN      ++ +IY   H    +
Sbjct: 318 QYLQELMGHSSIAATQVYTHVN----KTFLKDIYMNAHSLAKE 356


>gi|148553149|ref|YP_001260731.1| phage integrase family protein [Sphingomonas wittichii RW1]
 gi|148498339|gb|ABQ66593.1| phage integrase family protein [Sphingomonas wittichii RW1]
          Length = 308

 Score =  212 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 107/302 (35%), Positives = 162/302 (53%), Gaps = 11/302 (3%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            W  +L  +R  S+ T+++Y     + + FL  +    +    + +L   ++R ++++RR
Sbjct: 18  AWADHLRRDRRRSEHTVRAYLATAHRLIAFLGRHRGAAVDGALLARLDRGDLRGYLAERR 77

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + + + S  R LS +++FL Y+ +R+   +   + ++  +    +PR            
Sbjct: 78  GEGLSNVSTARELSAVRNFLDYVAEREGAAK--PVKVKGPRIKKGVPRP--VAPDDIAAI 133

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                 S    WI AR+ A+L LLYG GLRI EA++LT  +I+    TL + GK  K RI
Sbjct: 134 AEDAAESAAEPWIAARDEAVLLLLYGAGLRIGEAMALT-GDILPLGDTLSVTGKRAKTRI 192

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VP+L  VR+AI  Y  L P          LFRG RG PL P + +R +R  R  LGL   
Sbjct: 193 VPMLAPVREAIERYVALSPH--GAAPGEILFRGARGGPLAPELIRRAMRAARVRLGLGER 250

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           TT H LRHSFATHLL  G DLRS+Q +LGH  LS+TQ+YT V++ +    +M++Y   HP
Sbjct: 251 TTPHALRHSFATHLLGRGADLRSLQELLGHASLSSTQVYTGVDAAH----LMDVYRNAHP 306

Query: 320 SI 321
             
Sbjct: 307 RA 308


>gi|89054975|ref|YP_510426.1| phage integrase [Jannaschia sp. CCS1]
 gi|88864524|gb|ABD55401.1| phage integrase [Jannaschia sp. CCS1]
          Length = 304

 Score =  212 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 135/292 (46%), Gaps = 15/292 (5%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           + TL +Y  D +  ++ +                    + A+I+    Q +   +  R L
Sbjct: 26  RNTLLAYGRDLKDAMMSVRKSGG-------FAGADRAALEAYIAGLEAQGLAAATRARRL 78

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           S +K   ++  +     ++  L +    ++  LP  L+ ++   L++    +  ++   +
Sbjct: 79  SSLKQLYRFAHEEGWREDNPTLQITGPARTRKLPGTLSLEEVDALLEASATYGRNDADRL 138

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
             RN  ++ +LY  GLR++E +SL    +  D + L + GKG K R+VPL P  R A+  
Sbjct: 139 --RNHCLMQILYATGLRVTELVSLPITALRGDPNMLLVLGKGGKERMVPLSPPARTAMAA 196

Query: 213 YYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFA 270
           + D           L  F    +   L    F   I++L    G+ P   T HTLRH+FA
Sbjct: 197 WLDHLDATQEEPRSLFAFPSHGKSGHLTRVRFFTLIKELSASAGIDPARVTPHTLRHAFA 256

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           THLL NG DLR+IQ++LGH  ++TT+IYT++  +     + ++    HP   
Sbjct: 257 THLLQNGADLRAIQTLLGHADIATTEIYTHILDER----LRQLVLDHHPLAR 304


>gi|323705364|ref|ZP_08116939.1| integrase family protein [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535266|gb|EGB25042.1| integrase family protein [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 327

 Score =  212 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 79/318 (24%), Positives = 143/318 (44%), Gaps = 26/318 (8%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE------------EKI 58
           + EL    + +L      +  S  T+++Y  D   F  F+                   +
Sbjct: 8   NLELPPILEEFLNYFSTIKARSPNTVKAYLYDLILFFRFIKVRKNLCSDSDFDNIDISDV 67

Query: 59  TIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNM 116
            I  I  +   ++ AF+S     +     +  R ++ ++SF  Y   KRK+ T++  L +
Sbjct: 68  DISLIESIDLNDLYAFLSFVTHERSNTPPARARKVASLRSFYNYLYAKRKVITKNPALEL 127

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
            + K     P  L   +++ L++++              + AI+ L   CGLR+SE  ++
Sbjct: 128 ESPKLGIRQPVYLTLDESVKLLNSIDGEFKER-------DYAIITLFLNCGLRLSELANI 180

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
              +I DD+  L + GKG+K R V L  +   AI +Y  + P D  +  +  LF   R +
Sbjct: 181 NITDIKDDK--LTVIGKGNKQRTVYLNDACINAINDYLKVRPHD-GVKDKKALFLSKRLQ 237

Query: 237 PLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLST 294
            ++    Q  +++  +   L     + H LRH+ AT +   G  D+R++Q +LGH  +ST
Sbjct: 238 RISIKTIQYIVKKHLKDANLDGKKYSTHKLRHTAATLMYRYGKVDIRTLQRLLGHSNVST 297

Query: 295 TQIYTNVNSKNGGDWMME 312
           TQIYT+V+     D + +
Sbjct: 298 TQIYTHVDDSQLRDAVSK 315


>gi|261855921|ref|YP_003263204.1| integrase family protein [Halothiobacillus neapolitanus c2]
 gi|261836390|gb|ACX96157.1| integrase family protein [Halothiobacillus neapolitanus c2]
          Length = 329

 Score =  212 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 139/296 (46%), Gaps = 14/296 (4%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           L+  T  +Y  D +Q    L         +    Q+    +R +++  R   + +RS+ R
Sbjct: 30  LAPKTQAAYLGDWQQLQSHL-----HDQDVIKPDQIDDRRLRGYLAHCRESGLDNRSIAR 84

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
             S  +  L+Y +K  I   ++   +++ K +  LP A   +    L+D  ++       
Sbjct: 85  KSSATRWLLRYWQKIHIACPASPDALKSPKAAKKLPDAPAIETMNQLLDQPMVE-----D 139

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
            +  R+  +  L+Y  GLR++E + L   +I   +   R+ GK +K R+VP+       +
Sbjct: 140 ELLIRDRCMFELIYSSGLRVAELVRLDVHDIDRSEGIARVTGKREKTRLVPVGGKALDRV 199

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
             +  +    L    +  LF   RG+ L     Q  + +L +   L  +   H LRH+FA
Sbjct: 200 ALWLPIRKTLLKDTTEPALFLNRRGQRLTIRSVQMRLNRLAQQTHLGQTLHPHQLRHAFA 259

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
           TH+L + GDLR++Q +LGH  LSTTQIYT+++ +     + ++Y+  HP    K +
Sbjct: 260 THVLESSGDLRAVQEMLGHESLSTTQIYTHLDFQR----LAQVYESAHPRAHIKKQ 311


>gi|255283924|ref|ZP_05348479.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469]
 gi|255265506|gb|EET58711.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469]
          Length = 305

 Score =  212 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 72/305 (23%), Positives = 143/305 (46%), Gaps = 23/305 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+  E  + L K T+++Y  D  Q+  F+      K            +I  +I++   
Sbjct: 10  YLEYCEYRKELDKNTIKAYRIDLCQYFTFICCDEPNK-----------EKIEVYITELH- 57

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLVD 139
           +K   +++KR ++ +K+F  YL++ +I + +    ++   K++ +LPR +  ++   L++
Sbjct: 58  KKYKQKTVKRKIASLKAFYNYLEEEEIISYNPFRKIKVKFKETITLPRIILREEIEKLLN 117

Query: 140 N---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
                L            R+ A++ +L+  G R+ E  ++   ++  +   +RI GKG K
Sbjct: 118 YMYDCLKKNVLTGYKYQLRDIAVVEVLFATGARVYEISNIREDSVNLNSGQIRIMGKGGK 177

Query: 197 IRIVPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R V +   SV   + +YY     ++  +     F   RG        +  +++  +  G
Sbjct: 178 ERYVQISNSSVLAVLRKYYKQNENEIKKSGCF--FINNRGNRYTEQSIRSMLKKYAKQAG 235

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + T H  RHSFAT+L+  G D+  +Q I GH  + TTQIY ++ +K   + + E+  
Sbjct: 236 IARNITPHMFRHSFATYLIEEGVDVSCVQQIRGHSSIKTTQIYIHIAAKKQAEILREM-- 293

Query: 316 QTHPS 320
             HP 
Sbjct: 294 --HPR 296


>gi|76789612|ref|YP_328698.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           A/HAR-13]
 gi|237803298|ref|YP_002888492.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237805218|ref|YP_002889372.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|76168142|gb|AAX51150.1| integrase/recombinase [Chlamydia trachomatis A/HAR-13]
 gi|231273518|emb|CAX10435.1| integrase/recombinase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274532|emb|CAX11328.1| integrase/recombinase [Chlamydia trachomatis B/Jali20/OT]
          Length = 300

 Score =  212 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 92/307 (29%), Positives = 158/307 (51%), Gaps = 20/307 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + +   L ++ G+S L++Q+Y  D   FL        ++ +I+   +++   +  F+
Sbjct: 10  RLIEQFTIFLSVDHGISPLSVQAYCQDVLLFL--------QRASIEATDRINQESVFLFV 61

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            K    K  + +L R L  +K F  +LK  K+  +     + + K    LP  L+ ++  
Sbjct: 62  EKCHKAKESETTLARRLIALKVFFHFLKDAKMLDQQPF--IEHPKIWKRLPSILSTEEVN 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +L+D  L +  +    I +R++AILY  Y  G+R+SE   L   +I DD   +R+ GKG 
Sbjct: 120 SLLDQPL-NIPNLDTHIASRDAAILYTFYATGIRVSELCDLCIGDISDD--FIRVTGKGR 176

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLN--IQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K R+VP+    ++AI  Y      +L      +  +F  IRGK L+     + I    + 
Sbjct: 177 KTRLVPISIKAKQAIDAYLSSFRDELQKKNPSEEHVFLSIRGKKLDRSCVWKRITFYAKL 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +      + H+LRH+FATHLL+N  DLR IQ +LGH R+S+T+IYT+V S++    ++E 
Sbjct: 237 VT-TKRISPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASES----LIEK 291

Query: 314 YDQTHPS 320
           +   HP 
Sbjct: 292 FHTYHPR 298


>gi|222529381|ref|YP_002573263.1| site-specific tyrosine recombinase XerC [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222456228|gb|ACM60490.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 328

 Score =  212 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 84/318 (26%), Positives = 152/318 (47%), Gaps = 35/318 (11%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-----------------IQT 62
           ++L  +   +  S  T++ Y  D R FL +L       ++                 I+ 
Sbjct: 12  DFLNYMITIKNKSPNTIKEYYYDLRTFLRYLKAKDLNMLSQIEKIEDLENIDVSNFEIEK 71

Query: 63  IRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLK 120
           ++ L+ + +  + S   T+   G  +  R ++ I+SF KYL  + K+  ++   ++ + K
Sbjct: 72  LKTLTLSNLYEYFSFLATRFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPK 131

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                PR L   ++  L+  +              + AI+ L   CGLR+SE +++   +
Sbjct: 132 LGKRNPRYLTLNESKKLLSAIDGENKER-------DFAIITLFLNCGLRLSELVNINLSD 184

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I DD   LRI GKG+K RI+ L  + + AI  Y  + P +  +  +  LF   R K ++ 
Sbjct: 185 IKDD--MLRIVGKGNKERIIYLNKACKDAIENYLKVRPTE-GVKDKDALFLSERKKRISR 241

Query: 241 GVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
              Q  + +  +  G+     +AH LRH+ AT +  +G  D+RS+Q+ILGH  +STT+IY
Sbjct: 242 RTVQYIVEKYVKMAGINQKKISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIY 301

Query: 299 TNVNSKNGGDWMMEIYDQ 316
           T+VN     D + + +++
Sbjct: 302 THVND----DDIKKAFEK 315


>gi|302391937|ref|YP_003827757.1| integrase family protein [Acetohalobium arabaticum DSM 5501]
 gi|302204014|gb|ADL12692.1| integrase family protein [Acetohalobium arabaticum DSM 5501]
          Length = 310

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 83/313 (26%), Positives = 144/313 (46%), Gaps = 10/313 (3%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + +    K   ++ + L  ERG S+ T+  Y+ D   F  +L    +  +    +  ++ 
Sbjct: 1   MRNLTYHKAINSFTKYLIAERGYSESTVNHYKHDLSVFGRYLEKEFDCNLEELNVTNINR 60

Query: 69  TEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS-NSLP 126
            E+  F+S     +     +  R L  ++SF +YLKKR I   +   ++   K    S P
Sbjct: 61  FEVSEFLSDIILVKDNSPEARNRKLYSLRSFFEYLKKRNIIKNNPTDSIEASKSELKSEP 120

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             LNEK     ++ +     +      +R+ AI  L    GLRISE ++L   +I  +  
Sbjct: 121 IYLNEKNMEKYLEAI----KNYNSKYCSRDLAINKLFLYSGLRISELVNLNLDDINYEDQ 176

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF--DLNLNIQLPLFRGIRGKPLNPGVFQ 244
           +++  GKG+K R VPL      AI +Y          N + +  LF   + + ++    Q
Sbjct: 177 SIKFFGKGNKERYVPLHQEALTAIKDYLPDRNKITPKNQDARQALFLSNQRRRISVRTIQ 236

Query: 245 RYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           + +++  +  G+      T H LRH+FA+ L     DLR +Q +LGH  +STTQIYT+ +
Sbjct: 237 KMVKKYAKKAGVRNASKITPHKLRHTFASLLYQKTKDLRVLQDLLGHSDISTTQIYTHTD 296

Query: 303 SKNGGDWMMEIYD 315
            +     + E+ D
Sbjct: 297 KEQRKSAIDEMPD 309


>gi|291527676|emb|CBK93262.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 306

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 81/312 (25%), Positives = 138/312 (44%), Gaps = 19/312 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L     N+L+    ++ L + TL++Y  D RQF         E+I+I  I +++   +  
Sbjct: 4   LETVINNYLEYCNSQKCLDEKTLKAYRIDLRQF--------SEQISIINITEITPKILEQ 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-RNLKKSNSLPRALNEK 132
           +I +   Q    +++KR ++ +K+   YL+ + I   +    +  + +    LP+ +   
Sbjct: 56  YIVRLHEQ-YKPKTVKRKIASVKALFHYLEYKDILDHNPFNKILIHFRDPVILPKTIPLH 114

Query: 133 QALTLVDNVLLHTSHET----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
              T +  +     +      K    R++A+  LL+  G+RISE  SL   ++     T+
Sbjct: 115 TVETFLSTIYKQRKNAKTSYQKRNALRDAAVAELLFATGMRISELCSLKINDVNLYDGTI 174

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            I GKGDK R + +       IL  Y+   FD         F    GK L+    +R I 
Sbjct: 175 LIYGKGDKERRIQIGNEAVINILTEYNDA-FDTERQACNNFFINQSGKALSDQSVRRMIN 233

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +      +    T H  RH+FAT LL    D+R IQ +LGH  ++ T+IYT+V      D
Sbjct: 234 KYTSLASIDQHITPHMFRHTFATSLLEADVDIRYIQEMLGHSSINITEIYTHVTVSKQRD 293

Query: 309 WMMEIYDQTHPS 320
            ++      HP 
Sbjct: 294 ILV----TKHPR 301


>gi|172040496|ref|YP_001800210.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109]
 gi|171851800|emb|CAQ04776.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109]
          Length = 352

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 89/347 (25%), Positives = 145/347 (41%), Gaps = 49/347 (14%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +P+     LL   ++++  L    G S+ T+++Y+ D    L            ++ I  
Sbjct: 26  MPKARDPLLL--LEDYVDYLRYNLGRSENTIRAYQRDLTDSLE----------GLRDIES 73

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
            +    R  +            L R  S +K F K+L +R++   + +  +R  K   +L
Sbjct: 74  FTLDHARDVLGYAADDGASRSRLSRLASSMKGFGKFLAQREVLPANPVSALRLPKGEKTL 133

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDA------------------------RNSAILY 161
           PR L   QA TL+D +           +                         R+  I  
Sbjct: 134 PRVLRSDQARTLLDGLKRDALEPPAPHEGSEDAPATAQPTGNKNQRHATARRVRDWFIAE 193

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           LL+G G+R+ EA ++  ++       LR+ GKG+K R+VP    + +A+  +      +L
Sbjct: 194 LLFGTGIRVGEAEAIDVEDFDRANWLLRVTGKGNKTRVVPYGGVIDEALTHWLSHR-GEL 252

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-----LGLPLSTTAHTLRHSFATHLLSN 276
                  L  G+RG  LN    +R I Q  R      +G     + H  RHS AT +L  
Sbjct: 253 AQPANPALLVGVRGGRLNQREIRRVIDQAIRRHPELAVG---HMSPHGFRHSAATAVLEG 309

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
           G DLR +Q +LGH  ++TTQIYT+V    G + +   Y Q HP   +
Sbjct: 310 GADLRVVQELLGHASMNTTQIYTHV----GAERLKAAYRQAHPRSGE 352


>gi|238925026|ref|YP_002938542.1| integrase/recombinase-like protein [Eubacterium rectale ATCC 33656]
 gi|259710431|sp|C4ZGY6|XERC_EUBR3 RecName: Full=Tyrosine recombinase xerC
 gi|238876701|gb|ACR76408.1| integrase/recombinase-like protein [Eubacterium rectale ATCC 33656]
          Length = 306

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 81/313 (25%), Positives = 143/313 (45%), Gaps = 21/313 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L     ++L+    ++ L + T+++Y  D  QF          +I+I    +++  ++  
Sbjct: 4   LQTHISSYLEYCLAQKRLDEKTIKAYRIDLIQFY--------NEISISDPCKIASYDLEK 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-----RNLKKSNSLPRA 128
           +I K    K   +S++R ++ IK+F  YL+ + I  ++    +       +    ++P  
Sbjct: 56  YIEKMHL-KYKPKSVRRKIASIKAFFHYLEYKNIILQNPFNKIQIHFREPVILPKTIPLY 114

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           + EK   T+        ++  K    R++AI+ LL+  G+RISE  +L   ++      +
Sbjct: 115 IVEKFLFTIYKQRSAAKTNYQKRNALRDAAIVELLFSTGIRISELCNLKISDVNLIDGVI 174

Query: 189 RIQGKGDKIRIVPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
            I GKG K RI+ +   SV   + EY +    ++        F    GKPL+    +R I
Sbjct: 175 LIYGKGSKERILQIGNSSVLNILKEYKNDFYNEIVQCNHF--FSSQSGKPLSDQSVRRMI 232

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +      + L  T H  RH+FAT LL    D+R IQ +LGH  ++ TQIYT+V      
Sbjct: 233 NKYASLSSIDLHITPHMFRHTFATSLLEADVDIRYIQEMLGHSSINITQIYTHVAVSKQK 292

Query: 308 DWMMEIYDQTHPS 320
           D ++      HP 
Sbjct: 293 DILI----NKHPR 301


>gi|330443758|ref|YP_004376744.1| tyrosine recombinase XerD [Chlamydophila pecorum E58]
 gi|328806868|gb|AEB41041.1| tyrosine recombinase XerD [Chlamydophila pecorum E58]
          Length = 321

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 94/307 (30%), Positives = 148/307 (48%), Gaps = 20/307 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   L ++RGL + T+ +Y  D   FL+     + E        ++S   +  F+ K
Sbjct: 33  LEKFSLFLSVDRGLCQQTILAYSQDISLFLLLNKILSTE--------EISQNSVCYFVEK 84

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +   + +L R L  +K F  +LK  ++     I  + + K    LP  L+ ++   L
Sbjct: 85  LHERNEAEATLARRLIALKVFFIFLKDAQLLKHPPI--IEHPKIWKRLPTVLSPQEVEQL 142

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +        H +  I AR++AILY LY  G+R+SE   L   ++ D+   +R+ GKG K 
Sbjct: 143 L-LTPKRAKHLSPLIVARDTAILYTLYSTGIRVSELCDLEIGDVNDE--FIRVTGKGSKT 199

Query: 198 RIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R+VPL    R AI  Y              +  LF   RGK L      R I +  + + 
Sbjct: 200 RLVPLGSLARDAIDAYLSPFRDLMRQKSPKEEHLFLSFRGKKLERSCIWRRIHEYAKQIT 259

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H+LRH+FATHLL+N  DLR IQ +LGH R+S+T+IYT+V S    D ++E + 
Sbjct: 260 -SKPVSPHSLRHAFATHLLNNKADLRVIQEMLGHSRISSTEIYTHVAS----DALIEKFH 314

Query: 316 QTHPSIT 322
             HP + 
Sbjct: 315 TFHPRLD 321


>gi|237667473|ref|ZP_04527457.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|237655821|gb|EEP53377.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 328

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 94/329 (28%), Positives = 152/329 (46%), Gaps = 33/329 (10%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE----- 55
           ++ ++LPE VS        ++L  LE  R  S  T+ +Y+ D   F  FL  Y       
Sbjct: 8   LKNDDLPESVS--------DFLNYLETIRSKSPNTIDAYKIDLTLFFRFLCVYRGLVKND 59

Query: 56  ---EKITIQTIRQ-----LSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKR- 105
              E I I  I       +   ++ AF+S   + +     +  R ++ +KSF KYL  + 
Sbjct: 60  IEFEDINISNIDNEFLKSIKLRDLYAFLSFVEKYRNNSSYARARKVATLKSFFKYLFGKA 119

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
           KI +++  + + + K +   P  L   Q++ L++++      +     AR+  IL     
Sbjct: 120 KIISDNPAMELESPKINKRHPVYLTLNQSIALLESL-----DKDDKNYARDYCILTFFLN 174

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF-DLNLN 224
           CG+R+SE   +  + I  D   L I GKGDK R V L  +  +A+  Y  +      +  
Sbjct: 175 CGMRLSELCGIQIEKIRGD--ILSIVGKGDKERTVYLNEACLRALNNYLSVRDDSKASYE 232

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLRS 282
            +  LF   R  P+N    +  I++     G      T H LRH+ AT +   G  D+RS
Sbjct: 233 NKKYLFLSARNAPINKRTVEIMIKKHITNAGFTGEKYTPHKLRHTAATLMYKYGNVDIRS 292

Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +QSILGH  +STTQIYT+V+  +  D + 
Sbjct: 293 LQSILGHENISTTQIYTHVDDDDLRDAVK 321


>gi|57238849|ref|YP_179985.1| tyrosine recombinase xerD [Ehrlichia ruminantium str. Welgevonden]
 gi|58578779|ref|YP_196991.1| tyrosine recombinase xerD [Ehrlichia ruminantium str. Welgevonden]
 gi|57160928|emb|CAH57833.1| putative integrase/recombinase XerD or XerC [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58417405|emb|CAI26609.1| Tyrosine recombinase xerD [Ehrlichia ruminantium str. Welgevonden]
          Length = 312

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 87/315 (27%), Positives = 148/315 (46%), Gaps = 25/315 (7%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K    +L  +  E+ +S  T QSY  D      F             + ++S  +++ ++
Sbjct: 6   KYVNEFLTAIAAEKHISYNTYQSYMSDLLDLCKFFDCKN------LALIEVSRDDLKDYV 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                ++    ++ R +S IK+  K+  K  I      L++   + S +LP+ALN ++  
Sbjct: 60  RLMHKREYKSSTISRKISAIKNLYKFFCKDNIIAYDPALSIDFPRLSRTLPKALNIEEVS 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ-------NIMDDQSTL 188
            L+D   L +S +    +    AI+ +LY  G+R+SE + L          N   + S +
Sbjct: 120 RLLDTAALDSSPDGLRTN----AIINILYSSGIRVSELIYLKLNSIKEALNNDNIEISYI 175

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRG-KPLNPGVFQR 245
            I+GK ++ RIV L  S   +I +Y ++    +     I   LF G +   P+      +
Sbjct: 176 TIRGKANRERIVLLNSSAIVSIQKYLEVYMHFVPNGYEISQWLFPGTKFDNPITRQRIGQ 235

Query: 246 YIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            ++ L    G+ +   + H LRHSFATHLL+NG D+  IQ +LGH  LSTTQIYT V ++
Sbjct: 236 LLKDLSISAGVDMTRISPHKLRHSFATHLLNNGSDIIFIQKMLGHTSLSTTQIYTYVANE 295

Query: 305 NGGDWMMEIYDQTHP 319
                +  +  + HP
Sbjct: 296 ----KLKNVLFKYHP 306


>gi|254167351|ref|ZP_04874203.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|197623614|gb|EDY36177.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
          Length = 279

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 76/302 (25%), Positives = 135/302 (44%), Gaps = 36/302 (11%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E + + + L  E+  S+ T++ Y       L +     E          ++  ++  +  
Sbjct: 7   ELEKFKEYLRGEKR-SENTIKEYAHFISDMLRYFKKRAE---------DITPGDLNKYKM 56

Query: 77  KRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
              T +K    SL  +   I+S+ KY             N+ + K+   +P+ L+E +  
Sbjct: 57  YLSTKRKYSKNSLYLATKAIRSYFKYKNL------DTAKNLSSPKRPKQMPKYLSEDEVK 110

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKG 194
            L++             + R+ AI+ LL   GLR+SE  +L  +++  ++  + ++ GKG
Sbjct: 111 RLIEA---------SSENPRDYAIISLLAYSGLRVSELCNLKIEDVDFNERIVYVRSGKG 161

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           DK RIV + P V +A+  Y      D+       LF   +   ++     R +++     
Sbjct: 162 DKDRIVVVSPRVIEALQNYLYTREDDME-----YLFASQKSNKISRVQVFRIVKKYAEKA 216

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+    T H LRH+ AT LL  G D+R IQ  LGH  ++TTQIYT+V+       +  +Y
Sbjct: 217 GIKKEVTPHVLRHTLATTLLRRGVDIRFIQQFLGHSSVATTQIYTHVDDA----LLKSVY 272

Query: 315 DQ 316
           D+
Sbjct: 273 DK 274


>gi|257439773|ref|ZP_05615528.1| tyrosine recombinase XerC [Faecalibacterium prausnitzii A2-165]
 gi|257197793|gb|EEU96077.1| tyrosine recombinase XerC [Faecalibacterium prausnitzii A2-165]
          Length = 395

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 73/329 (22%), Positives = 139/329 (42%), Gaps = 24/329 (7%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY-------- 53
           E N        +   +   +++ LE+  G S  T  SY CD R F  F+           
Sbjct: 7   EKNPGKHPPFDDASPDIVEYVRYLEVIAGKSANTAFSYYCDLRGFSRFMKRRRGLVPADT 66

Query: 54  -----TEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKR-K 106
                  + +       +S  +I  ++    R       S  R L+ +  F  YL  +  
Sbjct: 67  EIKDIDPKGLDTAFWGSVSKEDIYEYLYFLNRECGNKKSSTARRLASLHGFYDYLVNQVN 126

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
             TE+   +++  K+   LP+ L  +Q++ L+++    +    +     +  ++ L   C
Sbjct: 127 KLTENPTASIKPPKQDKVLPKYLTAEQSMDLLESTQYQSDFPER-----DYCMVVLFLNC 181

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI- 225
           G+R+SE + +   +I  +Q  +R+ GKG K R+V L  +  +A+  Y         LN  
Sbjct: 182 GMRLSELVGMDLGDIDLEQRQIRLFGKGHKERMVYLNEACVEALQLYLAKRNTMEGLNPK 241

Query: 226 QLPLFRGIRGK-PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG-GDLRSI 283
           +  +F   R K  ++    ++ +    +  GL    + H LRH+ AT +   G  D+ ++
Sbjct: 242 EKAVFVTRRRKERISNRRVEQLVTGAMKAAGL-KGFSTHKLRHTAATLMYQTGNVDILTL 300

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           + +LGH  + TTQIYT++        + +
Sbjct: 301 KQLLGHSSVGTTQIYTHLQEFQVRAAIEQ 329


>gi|283458429|ref|YP_003363053.1| site-specific recombinase XerD [Rothia mucilaginosa DY-18]
 gi|283134468|dbj|BAI65233.1| site-specific recombinase XerD [Rothia mucilaginosa DY-18]
          Length = 437

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 69/257 (26%), Positives = 113/257 (43%), Gaps = 24/257 (9%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +G  S+ R+++ ++    +     I        +   K    LP+A++ +    L+    
Sbjct: 189 LGPNSIARTMAAVRGAHAFWVSALIVPTDPAAPVTPPKNVKRLPKAVSVEDIQRLL---- 244

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-------------STLR 189
                       RN AIL  LY  G R+SE L+    ++  +                +R
Sbjct: 245 -AVPDRETATGLRNRAILEFLYATGARVSEMLNADIDDVHFEGTLTDEDGNQITLPGYVR 303

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYI 247
           + GKG+K R+VP+    +KAI +Y       L  +      LF   RG  L        +
Sbjct: 304 LFGKGNKERLVPIGSYAQKAIQDYLVRARPSLVAHGKGTAALFVNGRGGRLGRQGAWLIL 363

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++     GL    + H++RHSFATHLL  G D+R +Q +LGH  ++TTQ+YT V  +   
Sbjct: 364 KEAAEAAGLSSDFSPHSMRHSFATHLLQGGADIRVVQELLGHASIATTQVYTKVTPE--- 420

Query: 308 DWMMEIYDQTHPSITQK 324
             +ME+Y   HP   ++
Sbjct: 421 -GLMEVYRMAHPRAHER 436



 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 5/71 (7%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
               L K    +L +L +ERG S+ T+ SY  D R++  ++A      + +    +++  
Sbjct: 36  AQTPLQKAIDQYLIHLRVERGSSEHTIASYARDLRRYSAYMAT-----LGVIDPERITTA 90

Query: 70  EIRAFISKRRT 80
           ++R+F+ +   
Sbjct: 91  QVRSFMRELAA 101


>gi|213585520|ref|ZP_03367346.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 259

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 72/266 (27%), Positives = 122/266 (45%), Gaps = 13/266 (4%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L  L +ER L++ TL +Y  D    + +L          +T+      +++  
Sbjct: 5   LARIEQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRG------KTLATAQADDLQTL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R        S  R LS ++ F ++L + K   +     + + K    LP+ L+E Q 
Sbjct: 59  LAERVEGGYKATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+   L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG
Sbjct: 119 ERLLQAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R+VPL       +  Y     P+ LN      LF   R + +    F   I+     
Sbjct: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGG 278
            G+     + H LRH+FATHLL++G 
Sbjct: 234 AGIDSEKLSPHVLRHAFATHLLNHGA 259


>gi|298206605|ref|YP_003714784.1| putative site-specific recombinase [Croceibacter atlanticus
           HTCC2559]
 gi|83849235|gb|EAP87103.1| putative site-specific recombinase [Croceibacter atlanticus
           HTCC2559]
          Length = 295

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 78/308 (25%), Positives = 150/308 (48%), Gaps = 14/308 (4%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +   + +L  L +E+  S  T+ +Y  D      F++     + +  +I  + Y  IR++
Sbjct: 1   MATIKAFLDYLRLEKKYSIHTINAYNNDLVALSDFVS----REFSETSINNIPYALIRSW 56

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I       I +R++ R +S +KS+  +L+K +    S ++  ++LK    L    ++K+ 
Sbjct: 57  IISLVDSGISNRTINRKVSSLKSYYSFLQKIEELEVSPLIKHKSLKVEKRLQVPFSKKEV 116

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             ++    L++     + D R+ AI+ L Y  G+R SE ++L   +I      +++ GK 
Sbjct: 117 SDVLSGFTLNS-----FEDYRDKAIVELFYSTGMRRSELINLKLSDINIANHYVKVLGKR 171

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +K RI+PL+ SV   + +Y+++   +   + +  +F   +   +   +  R I      +
Sbjct: 172 NKERIIPLIESVSLTLRQYFEIKDAEFKESSK-WIFVTSKNDKVYETLVYRIINNYFSKV 230

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
              +  + H LRHSFATHLL  G +L +++ +LGH  L+ TQ+YTN    N    +   Y
Sbjct: 231 SSKIKKSPHLLRHSFATHLLGEGANLNAVKDLLGHSSLAATQVYTN----NDIAVIKRAY 286

Query: 315 DQTHPSIT 322
             +HP   
Sbjct: 287 SASHPRNK 294


>gi|325509244|gb|ADZ20880.1| site-specific recombinase, phage integrase family [Clostridium
           acetobutylicum EA 2018]
          Length = 328

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 85/328 (25%), Positives = 144/328 (43%), Gaps = 28/328 (8%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE------- 55
             +L +I    L     N+L  L   R  S+ T+ +Y+ D   F  FL  Y         
Sbjct: 2   KYSLKQINDPSLPVSLNNFLNYLRTIRAKSERTIYNYKIDLILFFRFLKLYRGLSKDADF 61

Query: 56  -----EKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKR-KIT 108
                  I    +  ++  ++ AF+S     +  G  +  R ++ ++SF KY+  + KI 
Sbjct: 62  EDIVINDIDSSFLDSITLEDLFAFLSFTEEFRNNGSYARARKIAALRSFFKYISGKAKII 121

Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
            E+  L + +       P  L  +++  L++++             R+  I+ L   CGL
Sbjct: 122 KENPTLELESPSLPKRNPIYLTLEESQALLNSI-------DGPFKERDYCIITLFLNCGL 174

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD---LNLNI 225
           R+SE +S+    I  D  TL I GKG+K R + L     KAI +Y  +       + +  
Sbjct: 175 RLSELVSIDISKIKGD--TLTILGKGNKERTIYLNEMCLKAIEDYIPVRNQKASSIKIED 232

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLRSI 283
           +  LF   +   +N    +  +++      L     T H LRH+ AT +   G  D+RS+
Sbjct: 233 KDALFISRKLTRINQRTIELMVKKYALKANLDYEKLTPHKLRHTAATLMYKYGNVDIRSL 292

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           Q ILGH  +STTQIYT+++ +N    + 
Sbjct: 293 QQILGHESVSTTQIYTHIDDENLRKAVK 320


>gi|297559217|ref|YP_003678191.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296843665|gb|ADH65685.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 289

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 140/305 (45%), Gaps = 18/305 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++  +L  E G S  T++ Y  D R  L  L          +++R L    +R ++S+
Sbjct: 2   LESFAAHLSGELGRSPHTVRGYLADLRSLLAHLEERG------RSVRDLDVDLVRGWLSR 55

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R       ++ R ++ +++F ++L +  +        + +  +  SLP  L+E+QA   
Sbjct: 56  ARDAGASRATVARRVAAVRAFTRFLHREGVLAADPGPRLASPAQQRSLPTVLDERQAAA- 114

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L    E      R  A++  LY  G+R++E  +L   ++  ++ T+R+ GKG K 
Sbjct: 115 ----ALAGETEGTPTGLRRRAVVETLYATGVRVAELCALDLADVDRERDTVRVLGKGAKE 170

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R VP+      A+  +      ++        LF G RG  L     +  +    R +G 
Sbjct: 171 RTVPVGGPALDALDAWLSGGRPEMAGATSGSALFLGARGGRLGVRQAREDVHAHLRAVG- 229

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
              +  H LRHS ATHLL+ G DLRS+Q  LGH    +TQIYT+V+ +     + + Y +
Sbjct: 230 -ADSAPHGLRHSAATHLLNGGADLRSVQEFLGHASPRSTQIYTHVSVER----LRDTYRR 284

Query: 317 THPSI 321
            HP  
Sbjct: 285 AHPRA 289


>gi|220931948|ref|YP_002508856.1| phage integrase family protein [Halothermothrix orenii H 168]
 gi|219993258|gb|ACL69861.1| phage integrase family protein [Halothermothrix orenii H 168]
          Length = 310

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 84/311 (27%), Positives = 137/311 (44%), Gaps = 11/311 (3%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           + E L   +++ + L  ERG S LT++ YE D   F I+L      K    ++ +++   
Sbjct: 4   NVEYLNAVKSFKKYLATERGYSPLTVKEYERDLNLFYIYLTNEMGFKNDF-SLDKINKYH 62

Query: 71  IRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS-NSLPRA 128
           I  F+            +  R L  I+SF K+L K +    +    +   K    + P  
Sbjct: 63  IAEFLGDTILVHDNAPTTRNRKLYSIRSFFKFLVKYEYIKVNPAATIEASKTEVRAEPIY 122

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           +    A   ++ +  H     K     + AI+ L    GLR+SE + L   +I     ++
Sbjct: 123 MKLNDAQKYIETIKKHGGVNLKR----DLAIVKLFLYAGLRVSELVGLDLDDIDFKDQSI 178

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           +  GKG K R VPL P V  +I  Y+         N +    LF    GK ++    Q  
Sbjct: 179 KFYGKGKKERYVPLHPDVIMSIKNYFPERNEIQPKNEDAIKALFLSRHGKRISVRTIQMM 238

Query: 247 IRQLRRYLGLP--LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +++  +  G+      T H LRH+FA+ L     DL+ +Q +LGH  +STTQIYT+ + K
Sbjct: 239 VKKYAKLAGVKNADKITPHKLRHTFASLLYHKTKDLKILQDLLGHADISTTQIYTHTDVK 298

Query: 305 NGGDWMMEIYD 315
                + E+ D
Sbjct: 299 QRKKAIKELPD 309


>gi|58696879|ref|ZP_00372392.1| tyrosine recombinase XerD [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|225630697|ref|YP_002727488.1| site-specific recombinase, phage integrase family [Wolbachia sp.
           wRi]
 gi|58536905|gb|EAL60089.1| tyrosine recombinase XerD [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|225592678|gb|ACN95697.1| site-specific recombinase, phage integrase family [Wolbachia sp.
           wRi]
          Length = 328

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 87/314 (27%), Positives = 152/314 (48%), Gaps = 25/314 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  L  ER  ++ TL+SY  D  QF  FL        +  T+  ++ T I+ ++    T
Sbjct: 18  YIDALASERFAAQNTLESYRSDLHQFEEFLLE------SGTTLVGVNKTNIKDYVKSLCT 71

Query: 81  QK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNI----LNMRNLKKSNSLPRALNEKQAL 135
           QK     S+ R +S +K+F K L    I   +        ++N K S  LP+ L+ ++  
Sbjct: 72  QKKYKSSSISRKISAMKNFYKCLFNDGIIDFNPAPANDAELKNPKVSRPLPKYLSVEEIF 131

Query: 136 TLVDNVLLHTSHETKWIDARNS-AILYLLYGCGLRISEALSLTPQ------NIMDDQSTL 188
            L+D V    S   K I ++   AIL +LY  G+R+SE +S+         N  + +  +
Sbjct: 132 LLMDTVRKSASESNKEISSKRLCAILDILYSSGMRVSELISMKLCEVSHLINSNNKECYI 191

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGK-PLNPGVFQRY 246
            I+GK  + R +       +++  Y  +    ++   +   LF G +   P+      + 
Sbjct: 192 IIKGKSGRERQILFNEQALQSLRNYLSVRDNLISKEKESDWLFPGDKPNKPITRQRVGQL 251

Query: 247 IRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +++L R   +     + H +RHSFATHLL++G ++  IQ +LGH  LSTTQIYT++ ++ 
Sbjct: 252 MKELARKCNIDENKISPHVIRHSFATHLLNSGANIVLIQKVLGHTNLSTTQIYTHIANEK 311

Query: 306 GGDWMMEIYDQTHP 319
             D + +    +HP
Sbjct: 312 LKDKLAD----SHP 321


>gi|15834875|ref|NP_296634.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum Nigg]
 gi|34223084|sp|Q9PL53|XERD_CHLMU RecName: Full=Tyrosine recombinase xerD
 gi|7190294|gb|AAF39124.1| integrase/recombinase XerD [Chlamydia muridarum Nigg]
          Length = 301

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 93/307 (30%), Positives = 157/307 (51%), Gaps = 20/307 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   L ++RG++ L++Q+Y  D   FL        +++ I+T   ++   +  F+ K
Sbjct: 12  IEQFTIFLSVDRGIAPLSVQAYCQDILLFL--------QRVPIETTDMINQESVFLFVEK 63

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
               K  + +L R L  +K F  +LK  K+  +     + + K    LP  L+ ++  +L
Sbjct: 64  CHQAKESETTLARRLIALKVFFHFLKDAKLIHQQPF--IEHPKVWKRLPSILSTEEVNSL 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++  L +T +   +I  R++AILY  Y  G+R+SE   L   +I DD   +R+ GKG K 
Sbjct: 122 LNQPL-NTLNLDAYIANRDTAILYTFYATGIRVSELCDLCIGDISDD--FIRVTGKGRKT 178

Query: 198 RIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R+VP+    R+ I  Y       F      +  +F  IRGK L      + I    + + 
Sbjct: 179 RLVPISIKARQTIDSYLTMFRERFQKKNPSEEHVFLSIRGKKLERSCVWKRITFYAKLVT 238

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H+LRH+FATHLL+N  DLR IQ +LGH R+S+T+IYT+V S++    ++E + 
Sbjct: 239 -TKHISPHSLRHAFATHLLNNQADLRIIQEMLGHARISSTEIYTHVASES----IIEKFH 293

Query: 316 QTHPSIT 322
             HP  +
Sbjct: 294 THHPRSS 300


>gi|289578357|ref|YP_003476984.1| integrase [Thermoanaerobacter italicus Ab9]
 gi|297544634|ref|YP_003676936.1| integrase family protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|289528070|gb|ADD02422.1| integrase family protein [Thermoanaerobacter italicus Ab9]
 gi|296842409|gb|ADH60925.1| integrase family protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 328

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 77/312 (24%), Positives = 143/312 (45%), Gaps = 27/312 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-------------KITIQTIR 64
            + +L      +  S  T+++Y  D   FL FL     +              + +  I 
Sbjct: 20  LEEFLNYFSTVKARSYNTVKAYAYDLVLFLRFLKQRRGKVSPDVEFDEIDISDVDVDLIE 79

Query: 65  QLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKS 122
            +   ++ A+++     +     +  R ++ ++SF  YL K+ K+  ++    + + K S
Sbjct: 80  SVDLNDLYAYLNFVTNERSNTPPARARKVASLRSFYDYLYKKAKVINKNPTQELESPKLS 139

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
              P  L   ++  L+D++             R+ AI+ L   CGLR+SE +++   +I 
Sbjct: 140 VRQPIYLTLDESKKLLDSI-------DGPFKERDYAIITLFLNCGLRVSELVNINIDDIK 192

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           DD+  L + GKG+K R V L  +   AI  Y  + P +  +  +  LF   R K ++   
Sbjct: 193 DDK--LTVIGKGNKQRTVYLNDACINAINAYLRVRPKE-GVKDKKALFLSKRLKRISVKT 249

Query: 243 FQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTN 300
            Q  +++  +   L     +AH LRH+ AT +   G  D+R++Q +LGH  +STTQIYT+
Sbjct: 250 VQYTVKKHLKNANLGGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTH 309

Query: 301 VNSKNGGDWMME 312
           V+     + + +
Sbjct: 310 VDDSQLKEAVNK 321


>gi|270285043|ref|ZP_06194437.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum Nigg]
 gi|270289068|ref|ZP_06195370.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum Weiss]
 gi|301336439|ref|ZP_07224641.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum
           MopnTet14]
          Length = 299

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 93/307 (30%), Positives = 157/307 (51%), Gaps = 20/307 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   L ++RG++ L++Q+Y  D   FL        +++ I+T   ++   +  F+ K
Sbjct: 10  IEQFTIFLSVDRGIAPLSVQAYCQDILLFL--------QRVPIETTDMINQESVFLFVEK 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
               K  + +L R L  +K F  +LK  K+  +     + + K    LP  L+ ++  +L
Sbjct: 62  CHQAKESETTLARRLIALKVFFHFLKDAKLIHQQPF--IEHPKVWKRLPSILSTEEVNSL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++  L +T +   +I  R++AILY  Y  G+R+SE   L   +I DD   +R+ GKG K 
Sbjct: 120 LNQPL-NTLNLDAYIANRDTAILYTFYATGIRVSELCDLCIGDISDD--FIRVTGKGRKT 176

Query: 198 RIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R+VP+    R+ I  Y       F      +  +F  IRGK L      + I    + + 
Sbjct: 177 RLVPISIKARQTIDSYLTMFRERFQKKNPSEEHVFLSIRGKKLERSCVWKRITFYAKLVT 236

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H+LRH+FATHLL+N  DLR IQ +LGH R+S+T+IYT+V S++    ++E + 
Sbjct: 237 -TKHISPHSLRHAFATHLLNNQADLRIIQEMLGHARISSTEIYTHVASES----IIEKFH 291

Query: 316 QTHPSIT 322
             HP  +
Sbjct: 292 THHPRSS 298


>gi|326204549|ref|ZP_08194406.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
 gi|325985342|gb|EGD46181.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
          Length = 297

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 78/298 (26%), Positives = 140/298 (46%), Gaps = 15/298 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            ++++  L+ E+  S  T+ +Y  D   F  F+     +     T+  ++   +R + + 
Sbjct: 7   FEDFINFLKAEKDASAFTIANYTSDFSIFSSFVESQGIKP----TVDAITTPLLRKYTTF 62

Query: 78  RR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            +  +K    +++R ++ ++SF  +L  ++   ++ +  +   KK + LP  L   +   
Sbjct: 63  LKIDKKYEVETIRRKINSLRSFFSFLISQEYIDKNPMAPITAPKKPDRLPIYLKPDEIKL 122

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195
           L+   + H+         R+  I+  L   GLR SE LSL  QNI    +T+ +  GKG 
Sbjct: 123 LISMPMKHSRDNK----LRDKCIIETLVFTGLRRSELLSLNWQNIDFGSNTITVLNGKGK 178

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R+VP+   +   +  Y        +      +F    G  L+     +  R+  +  G
Sbjct: 179 KQRVVPITEPLISDLWAYLQTRLPLHD----NAVFISGNGTRLSTTPLNQLFRRYLKLAG 234

Query: 256 LP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           L     T H LRHS+ T LL NG DL SIQS++GH  L+TT+IYT+V+ K+    + +
Sbjct: 235 LTGKGYTIHKLRHSYGTLLLQNGADLISIQSLMGHNDLNTTKIYTHVDMKHLKQEVKK 292


>gi|58616838|ref|YP_196037.1| tyrosine recombinase xerD [Ehrlichia ruminantium str. Gardel]
 gi|58416450|emb|CAI27563.1| Tyrosine recombinase xerD [Ehrlichia ruminantium str. Gardel]
          Length = 312

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 87/315 (27%), Positives = 148/315 (46%), Gaps = 25/315 (7%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K    +L  +  E+ +S  T QSY  D      F             + ++S  +++ ++
Sbjct: 6   KYVNEFLTAIAAEKHISYNTYQSYMSDLLDLCKFFDCKN------LPLIEVSRDDLKDYV 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                ++    ++ R +S IK+  K+  K  I      L++   + S +LP+ALN ++  
Sbjct: 60  RLMHKREYKSSTISRKISAIKNLYKFFCKDNIIAYDPALSLDFPRLSRALPKALNIEEVS 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ-------NIMDDQSTL 188
            L+D   L +S +    +    AI+ +LY  G+R+SE + L          N   + S +
Sbjct: 120 RLLDTAALDSSPDGLRTN----AIINILYSSGIRVSELIYLKLNSIKEALNNDNIEISYI 175

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRG-KPLNPGVFQR 245
            I+GK ++ RIV L  S   +I +Y ++    +     I   LF G +   P+      +
Sbjct: 176 TIRGKANRERIVLLNSSAIVSIQKYLEVYMHFVPNGYEISQWLFPGTKFDNPITRQRIGQ 235

Query: 246 YIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            ++ L    G+ +   + H LRHSFATHLL+NG D+  IQ +LGH  LSTTQIYT V ++
Sbjct: 236 LLKDLSISAGVDMTRISPHKLRHSFATHLLNNGSDIIFIQKMLGHTSLSTTQIYTYVANE 295

Query: 305 NGGDWMMEIYDQTHP 319
                +  +  + HP
Sbjct: 296 ----KLKNVLFKYHP 306


>gi|255065181|ref|ZP_05317036.1| tyrosine recombinase XerD [Neisseria sicca ATCC 29256]
 gi|255050602|gb|EET46066.1| tyrosine recombinase XerD [Neisseria sicca ATCC 29256]
          Length = 291

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 137/300 (45%), Gaps = 20/300 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L++L ++  LS  TLQ Y  D  +    L       +  +            + +  +  
Sbjct: 10  LESLWLQDRLSHNTLQGYRRDLEKIAARLEAGGHTWLDAEAADLADAV----YAADEK-- 63

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                S  R+LS  K    +L++ +  T++    ++  K++  LP  + E Q   L+   
Sbjct: 64  ---HSSQARALSACKRLYAWLEETERRTDNPTRFLKAPKQTQKLPTLITEAQIENLL--- 117

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
                        R+ A+L ++Y  GLR++EA+ L   ++  ++  +R  GKGDK+RIVP
Sbjct: 118 --AAPDTDTPHGLRDKALLEVMYATGLRVTEAVKLQLGDLDLNRGCIRTIGKGDKLRIVP 175

Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +       +  Y     P  L   I   +F   +   ++  +    ++      G+  S 
Sbjct: 176 MGEEAVYWVERYCAESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKNYAEAAGIT-SL 234

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H LRH+FATHL+++G DLR++Q +LGH  ++TTQIYT+V +      +  I D+ H  
Sbjct: 235 SPHGLRHAFATHLVNHGVDLRAVQLMLGHANINTTQIYTHVAN----IRLKNIVDEHHSR 290


>gi|149194285|ref|ZP_01871382.1| Phage integrase [Caminibacter mediatlanticus TB-2]
 gi|149135460|gb|EDM23939.1| Phage integrase [Caminibacter mediatlanticus TB-2]
          Length = 275

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 92/307 (29%), Positives = 147/307 (47%), Gaps = 38/307 (12%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +  + +L+ L I +G+SK T ++Y+ D  QF  F+          + I  +   ++  
Sbjct: 1   MSRYLEAFLEYLLINKGVSKNTYEAYKRDLVQFEKFIE---------KDIIDVDSNDVIR 51

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+S+   +    RSL R LS I SF  +  KR    E     ++  K   SLP+ L++++
Sbjct: 52  FLSQIDNK----RSLNRKLSAINSFFDFAYKRNYVDEK--FKIKQAKLPKSLPKYLSKEE 105

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QG 192
            LT     + H    + W + R+ A++  LY  GLRISEAL++   +I  +   +R+   
Sbjct: 106 ILT----PISHIDSNSSWFELRDKALILFLYATGLRISEALNIKLSDI--EDGWVRVEMA 159

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG+K R+VP+     KAI EY    P          LF       L+        ++   
Sbjct: 160 KGEKQRLVPIADVALKAIEEYLAKRPCR-----SEYLFVNKNCNKLSRISAFNITKKYLA 214

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                   + H LRHSFAT L+    DLR +Q +LGH  L+TTQIYT++  +N  D ++ 
Sbjct: 215 -------VSPHVLRHSFATSLVLGNADLRVVQELLGHASLNTTQIYTHIQKENLKDTIL- 266

Query: 313 IYDQTHP 319
              + HP
Sbjct: 267 ---KYHP 270


>gi|315186399|gb|EFU20159.1| integrase family protein [Spirochaeta thermophila DSM 6578]
          Length = 299

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 81/309 (26%), Positives = 139/309 (44%), Gaps = 21/309 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + +  +L  E G S+LT ++Y     +F  +L     E      +  +S      FI
Sbjct: 7   RLLRRYRTHLVAELGRSRLTEETYLPLCERFCAWLECRGLE------VETVSRRTCEEFI 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
              R +    R++ + +S ++SF ++L    +  ++ +  M   + S +LPR        
Sbjct: 61  VDERGEGKETRTIAKEMSALRSFFRFLVLEGVRPDNPLEEMDAPRISRTLPRV-----LE 115

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
                +LL     T     R+  +L +LY CGLR+SEA  L  Q+I   +  ++++GKG+
Sbjct: 116 EEEVEILLEAVDTTPPEGMRDRCLLEVLYSCGLRVSEACGLDLQDIFLSEGFVKVRGKGE 175

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNI----QLPLFRGIRGKPLNPGVFQRYIRQLR 251
           K R+VP        +  Y       L        +  +F    G+ L+       +++L 
Sbjct: 176 KERLVPFGKEAGHWMRRYLSEARPVLAARRPGSREQAVFLNRWGRRLSRKGAWIRLKRLV 235

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+      HT RH+ ATHLL  G +LR +Q  LGH  +STTQIYT+V+++     + 
Sbjct: 236 AASGVDAKL--HTFRHTCATHLLHGGANLREVQEFLGHADISTTQIYTHVDARR----LA 289

Query: 312 EIYDQTHPS 320
             +   HP 
Sbjct: 290 SYHHMYHPR 298


>gi|119384024|ref|YP_915080.1| phage integrase family protein [Paracoccus denitrificans PD1222]
 gi|119373791|gb|ABL69384.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 323

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 136/307 (44%), Gaps = 23/307 (7%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           + TL +Y  D R F+ +LA   E  +T+          +  ++S    Q +   +  R L
Sbjct: 27  RNTLLAYGRDLRDFVDWLAARDETLLTVP------REGVEDYLSHCDAQGLSRATRARRL 80

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           S I+   ++        +     +    ++  LP+ L+  +   ++D +     +ET+  
Sbjct: 81  SAIRQLTRFALDEGWREDDPAGRISGPGRAQRLPKVLDRAEVQAMLDALPRIGRNETER- 139

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
            ARN  ++ L+Y  G+R+SE +SL       D + L I+GKG K R+VPL    R+A+  
Sbjct: 140 -ARNLVLVELVYATGMRVSELVSLPVGACRGDPALLLIRGKGGKERMVPLSDPARRALAA 198

Query: 213 YYDLCP---------FDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGL-PLSTT 261
           +                +       LF    R   +        + QL    G+ P   +
Sbjct: 199 WLKRRDDAPAESPLGRLVAGKGARWLFPAPSREGHMTRQAMNALLGQLALAAGIDPARVS 258

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            H +RH+FATHLL  G DLR+IQ++LGH  L TT+IYT+V        M ++    HP  
Sbjct: 259 PHVIRHAFATHLLEGGADLRAIQTLLGHADLGTTEIYTHV----MDTRMRDLVLNHHPLA 314

Query: 322 TQKDKKN 328
             +  +N
Sbjct: 315 KGRGDEN 321


>gi|255326180|ref|ZP_05367266.1| tyrosine recombinase XerD [Rothia mucilaginosa ATCC 25296]
 gi|255296634|gb|EET75965.1| tyrosine recombinase XerD [Rothia mucilaginosa ATCC 25296]
          Length = 438

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 69/257 (26%), Positives = 113/257 (43%), Gaps = 24/257 (9%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +G  S+ R+++ ++    +     I        +   K    LP+A++ +    L+    
Sbjct: 190 LGPNSIARTMAAVRGAHAFWVSALIVPTDPAAPVTPPKNVKRLPKAVSVEDIQRLL---- 245

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-------------STLR 189
                       RN AIL  LY  G R+SE L+    ++  +                +R
Sbjct: 246 -AVPDRETATGLRNRAILEFLYATGARVSEMLNADIDDVHFEGTLTDEDGNQITLPGYVR 304

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           + GKG+K R+VP+    +KAI +Y       F  +      LF   RG  L        +
Sbjct: 305 LFGKGNKERLVPIGSYAQKAIQDYLVRARPSFVAHGKGTSALFVNGRGGRLGRQGAWLIL 364

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++     GL    + H++RHSFATHLL  G D+R +Q +LGH  ++TTQ+YT V  +   
Sbjct: 365 KEAAEAAGLSSDFSPHSMRHSFATHLLQGGADIRVVQELLGHASIATTQVYTKVTPE--- 421

Query: 308 DWMMEIYDQTHPSITQK 324
             +ME+Y   HP   ++
Sbjct: 422 -GLMEVYRMAHPRAHER 437



 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 5/71 (7%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
               L K    +L +L +ERG S+ T+ SY  D R++  ++A      + +    +++  
Sbjct: 45  AQTPLQKAIDQYLIHLRVERGSSEHTIASYARDLRRYSAYMAT-----LGVIDPERITTA 99

Query: 70  EIRAFISKRRT 80
           ++R+F+ +   
Sbjct: 100 QVRSFMRELAA 110


>gi|255525234|ref|ZP_05392176.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296188719|ref|ZP_06857107.1| phage integrase [Clostridium carboxidivorans P7]
 gi|255511097|gb|EET87395.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296046983|gb|EFG86429.1| phage integrase [Clostridium carboxidivorans P7]
          Length = 330

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 91/328 (27%), Positives = 155/328 (47%), Gaps = 28/328 (8%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE------- 55
             N+  I +  L +   ++L  LE  +G S+ T++ Y+ D   F  FL  Y         
Sbjct: 2   KYNIASIRNNTLPQSLIDFLNYLETIKGKSQNTIKGYKIDLTMFFRFLKIYKGLINDETL 61

Query: 56  --EKITIQTI-----RQLSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKR-K 106
             E+I I  I     R+++  ++ AF+S   + ++    +  R ++ +KSF K+L  R K
Sbjct: 62  DFEEIPIGDIDNSLLRKITLADLYAFLSFTEKYRQNSTYARARKVATLKSFFKFLSSRAK 121

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
           +  E+  +++ + K S   P  L   ++ +L+  V       +     R+  I+ L   C
Sbjct: 122 VIDENPAVDLESPKISKRNPTYLTLDESKSLLKAV-------SGRNKERDYCIITLFLNC 174

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI- 225
           GLR+SE  S+   NI  D   L + GKG+K R V L  +  KA+  Y  +   +++  I 
Sbjct: 175 GLRLSELCSINISNIKGD--ILTVIGKGNKERTVYLNNACIKALNNYLKVRSENIDKIID 232

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLRSI 283
           +  LF       ++    +  +++      L     T H LRH+ AT +   G  D+RS+
Sbjct: 233 KDVLFISKNHTRMSKRTVEVMLKKHLINAELDSEKYTPHKLRHTAATLMYKYGNVDIRSL 292

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           Q ILGH  +STTQIYT+V+ +   D + 
Sbjct: 293 QKILGHENVSTTQIYTHVDDEKLRDAVK 320


>gi|307297306|ref|ZP_07577112.1| integrase family protein [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916566|gb|EFN46948.1| integrase family protein [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 299

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 76/306 (24%), Positives = 136/306 (44%), Gaps = 19/306 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +  +  + + +N+E  R +S  T+ +Y  D   F +FL             + +   +I 
Sbjct: 2   DFSEAVERFKENMEFVRNMSSNTVAAYLSDLHHFELFLNERGI------DYKSVKRKDIE 55

Query: 73  AFISKRRTQKIG-----DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
            F+ +    K         ++ R+LS I+SF  +L      ++     ++N K    +P 
Sbjct: 56  LFVKEYSQGKYSRKRPSATTVARNLSTIRSFYTFLYISGTVSKVPTELIKNPKTRRRIPD 115

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS- 186
            +   + + ++      +S  +  +  RN AI+ ++Y CGLR+SE   L   ++    S 
Sbjct: 116 YITHDEVMEIL------SSFRSTNLGKRNKAIVAIMYFCGLRVSEVCKLRLGDLRMGNSP 169

Query: 187 TLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            +RI  GKG++ R VP+   V   + EY  +         +  +F G RG+P+   V  +
Sbjct: 170 AVRIMSGKGNRDREVPMNDQVLSIVKEYLQIRREFPMSEYEDHVFIGTRGEPMARNVIPK 229

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +    +Y+        H  RHSFAT LL  G  ++ +Q +LGH  LSTT IY ++  K 
Sbjct: 230 VLNTQVKYVYPEKRVHPHLFRHSFATQLLQKGASIKIVQELLGHANLSTTSIYLHITDKE 289

Query: 306 GGDWMM 311
               + 
Sbjct: 290 KRAAVQ 295


>gi|295105592|emb|CBL03136.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 398

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 69/318 (21%), Positives = 136/318 (42%), Gaps = 24/318 (7%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY-------------TEEKIT 59
           +   +   +++ LE+  G S  T  SY CD R F  F+                  + + 
Sbjct: 18  DAAPDIVEYVRYLEVIAGKSANTAFSYYCDLRSFSRFMKRRRGLVATDAEFKEIDPKGLD 77

Query: 60  IQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMR 117
                 ++  +I  ++    R       S  R L+ +  F  YL  +    +E     +R
Sbjct: 78  TAFWGSITKEDIYEYLYFLNRECGNKKSSTARRLASLHGFYDYLVNQVNRLSEDPTAAIR 137

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             K+   LP+ L  +Q+++L+++    +    +     +  ++ L   CG+R++E + + 
Sbjct: 138 PPKQDKVLPKYLTAEQSISLLESTQTQSDFPER-----DYCMVVLFLNCGMRLAELVGMD 192

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGI-RG 235
             +I  +Q  +R+ GKG K R+V L  +  +A+  Y         L+  +  +F    R 
Sbjct: 193 LGDIDLEQRQIRLFGKGHKERMVYLNDACVEALQLYLRKRNTMEGLSPKEKAVFITRMRK 252

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLST 294
           + ++    ++ I    +  GL    + H LRH+ AT +   G  D+ +++ +LGH  + T
Sbjct: 253 ERISNRRVEQLISGAMKAAGL-KGFSTHKLRHTAATLMYQTGNVDILTLKQLLGHSSVGT 311

Query: 295 TQIYTNVNSKNGGDWMME 312
           TQIYT++        + E
Sbjct: 312 TQIYTHLQEFQVRSAIEE 329


>gi|266620141|ref|ZP_06113076.1| tyrosine recombinase XerD [Clostridium hathewayi DSM 13479]
 gi|288868265|gb|EFD00564.1| tyrosine recombinase XerD [Clostridium hathewayi DSM 13479]
          Length = 323

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 139/296 (46%), Gaps = 13/296 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +++ +L +ER LS  T+ +Y+ D      +L     E I   +I          F+  + 
Sbjct: 14  DFINSLSLERNLSGKTIYAYKSDLLCMFTWLNENKYESINPHSISDY-------FLYLQN 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKKSNSLPRALNEKQALTLV 138
            +K+  RS++R    IK F  Y+   K   E  +  + R  +   SLPR L++ +   L+
Sbjct: 67  NKKLSPRSIRRKYVSIKQFFHYINVEKGVNEIFMKFSSRKFQLPKSLPRTLSKMEVNQLI 126

Query: 139 ----DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
                     ++   + +  R+  I+ +L+  GLRI E  +L  ++    +++  I GKG
Sbjct: 127 ATVSKEYKSASTDFYRRLCLRDMCIIEILFCLGLRIGEVAALNIEDYDSGEASFLIHGKG 186

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +K R++ +        L+ +     + NL     LF    GK L+    +    + R   
Sbjct: 187 NKERMLFISSITVNQKLQKWIRTRQEFNLQ-DDALFVNKYGKRLSIYSIENLFYKYRELA 245

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +    T H LRHSFAT LL+NG D+R++Q ILGH  + TTQIYT V+ K   + +
Sbjct: 246 HINSEATPHYLRHSFATQLLNNGADIRAVQDILGHSSIVTTQIYTEVSLKRKKEVL 301


>gi|257458301|ref|ZP_05623450.1| tyrosine recombinase XerD [Treponema vincentii ATCC 35580]
 gi|257444328|gb|EEV19422.1| tyrosine recombinase XerD [Treponema vincentii ATCC 35580]
          Length = 297

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 150/307 (48%), Gaps = 21/307 (6%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           + + +   L      ++LT ++Y    R F   L        + + I   S  +   F+ 
Sbjct: 5   QLRAFYGYLISAEARAQLTAKTYINTMRLFQQQLG-------SERLIEDASADDCIGFLL 57

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            R  + I  R+L +  + ++SF ++L+   +  ++    + + ++  +LPRAL   +   
Sbjct: 58  ARAEEGITGRTLAKDQAALRSFYRFLQLENVRADNPAEQLESPRREKNLPRALELDEVDK 117

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+  + L T +       R+ A+  L+Y  GLR+SEA++L+ ++I  ++  L+++GKG K
Sbjct: 118 LLAAIPLDTPN-----GIRDRALFELIYSAGLRVSEAVTLSLEDIFFNEQLLKVRGKGGK 172

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL-------NLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
            RIVP      + +  Y       L       N      +F    G+ L      + +++
Sbjct: 173 ERIVPFGAQAEERLTVYLKTARPLLLKPAHSENTETTGAVFLNHHGERLTRKGIWKRLQE 232

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           + +  G+      HTLRHS+ATHLL+ G DLRS+Q +LGH  ++TTQIYT++  K+   +
Sbjct: 233 IEQLSGVTTKI--HTLRHSYATHLLAGGADLRSVQCLLGHASIATTQIYTHIEDKDLEAY 290

Query: 310 MMEIYDQ 316
             + + Q
Sbjct: 291 HRKFFKQ 297


>gi|164688594|ref|ZP_02212622.1| hypothetical protein CLOBAR_02239 [Clostridium bartlettii DSM
           16795]
 gi|164603007|gb|EDQ96472.1| hypothetical protein CLOBAR_02239 [Clostridium bartlettii DSM
           16795]
          Length = 295

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 69/304 (22%), Positives = 136/304 (44%), Gaps = 12/304 (3%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +K  + +L  +E  + LSK T+ SY  D ++++ +L            +  +   +I ++
Sbjct: 1   MKVLEEYLNYIEKNKKLSKNTVASYNRDLKKYVEYLNERNI------NLSDVVENDIISY 54

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + +   + I   S+ R +S IKS+  YL   KI       N++  K        L E + 
Sbjct: 55  LIELEKEDISVASISRMISSIKSYHDYLFFNKILDTDPSKNIKKPKVKRVDVEILTEDEV 114

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+    L T    +     + AI  +LYG G++++E + +  +++  +   +   G G
Sbjct: 115 DKLLKFEDLSTPKRIR-----DKAIFEILYGTGIKVTELIDMNLEDVDLEIDYIYC-GSG 168

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
              R++PL  +    +L+Y +    +L    +  LF   +G+        + I++  +  
Sbjct: 169 KNQRVIPLCETTEFYLLKYINESRNELTYPEEKALFVNAQGQRFTRQGLWKLIKKYAKEA 228

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            +  +     LR+SFA HLL+ G ++  +  ILG+  LS+ Q+Y     KN    + E +
Sbjct: 229 DINKNINPTVLRNSFAIHLLNGGANVAVVNKILGNSNLSSLQLYLKHIDKNLRKEIKEKH 288

Query: 315 DQTH 318
            + H
Sbjct: 289 PREH 292


>gi|326389407|ref|ZP_08210974.1| integrase family protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325994412|gb|EGD52837.1| integrase family protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 330

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 79/325 (24%), Positives = 152/325 (46%), Gaps = 32/325 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-------------KITIQTIR 64
            + +L      +  S  T+++Y  D   FL FL     +              + +  I 
Sbjct: 21  LEEFLNYFSTVKARSYNTVKAYAYDLVLFLRFLKQRRGKVSPNVEFDEIDISDVDVDLIE 80

Query: 65  QLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKS 122
            +   ++ A+++    ++     +  R ++ ++SF  YL K+ K+ +++    + + K S
Sbjct: 81  SVDLNDLYAYLNFVANERSNTPPARARKVASLRSFYNYLYKKAKVLSKNPTQELESPKLS 140

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
              P  L   ++  L++++             R+ AI+ L   CGLR+SE +++   +I 
Sbjct: 141 VRQPIYLTLDESKKLLNSI-------DGPFKERDYAIITLFLNCGLRVSELVNINLDDIK 193

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           DD+  L + GKG+K R V L  +   AI  Y ++ P +  +  +  LF   R K ++   
Sbjct: 194 DDK--LTVIGKGNKQRTVYLNDACIDAINTYLEVRPKE-GVKDKKALFLSKRLKRISVKT 250

Query: 243 FQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTN 300
            Q  +++  +   L     +AH LRH+ AT +   G  D+R++Q +LGH  +STTQIYT+
Sbjct: 251 VQYTVKKHLKNANLEGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTH 310

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKD 325
           V+       + E  ++ +P   ++D
Sbjct: 311 VDDSQ----LKEAVNK-NPLSQKED 330


>gi|225018459|ref|ZP_03707651.1| hypothetical protein CLOSTMETH_02406 [Clostridium methylpentosum
           DSM 5476]
 gi|224948768|gb|EEG29977.1| hypothetical protein CLOSTMETH_02406 [Clostridium methylpentosum
           DSM 5476]
          Length = 329

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 87/333 (26%), Positives = 154/333 (46%), Gaps = 28/333 (8%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-------------KIT 59
           +L K  +++L  L   +G S+ T+  Y  D R F  F+  +  +              I 
Sbjct: 6   DLPKLARDYLLYLLTIKGRSQRTVDGYAIDLRTFFRFMKLHRGQVPADCVFEEILINDID 65

Query: 60  IQTIRQLSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMR 117
              IR +S +++  F++   R++  G ++  R +S ++ F KY     ++ T++ + N+ 
Sbjct: 66  DNFIRSVSLSDVYEFLNYTMRSRSNGAKTRARKVSSLRGFFKYLTVNTQLLTDNPVKNLE 125

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
                 SLP  L+ +Q++ L+D V   +S        R+  IL L   CG+R+SE + + 
Sbjct: 126 IPAAKKSLPIHLSVEQSVKLLDEVGARSSG----TQYRDYCILTLFLNCGMRLSELVGIN 181

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRG- 235
             +   D   L++ GKG+K R+V L  + + AI  Y       L   + +  LF   R  
Sbjct: 182 LSSFDRDSGALKLLGKGNKERLVYLNEACQDAIDNYLTKERGQLKTIVDKDALFLSCRSG 241

Query: 236 KPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLS 293
           K L     Q  +    +  GL  +  + H LRH+ AT L   G  DL  ++ +LGH  + 
Sbjct: 242 KRLGARQVQLVVSGALKAAGLDHMGFSTHKLRHTAATLLYQEGNVDLLVLKEMLGHANVG 301

Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
           TT+IYT+V++K   +   +     +P   +K +
Sbjct: 302 TTEIYTHVSNKKVQEAAAK-----NPLAHKKKR 329


>gi|160945174|ref|ZP_02092400.1| hypothetical protein FAEPRAM212_02693 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442905|gb|EDP19910.1| hypothetical protein FAEPRAM212_02693 [Faecalibacterium prausnitzii
           M21/2]
          Length = 402

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 69/318 (21%), Positives = 136/318 (42%), Gaps = 24/318 (7%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY-------------TEEKIT 59
           +   +   +++ LE+  G S  T  SY CD R F  F+                  + + 
Sbjct: 18  DAAPDIVEYVRYLEVIAGKSANTAFSYYCDLRSFSRFMKRRRGLVATDAEFKEIDPKGLD 77

Query: 60  IQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMR 117
                 ++  +I  ++    R       S  R L+ +  F  YL  +    +E     +R
Sbjct: 78  TAFWGSITKEDIYEYLYFLNRECGNKKSSTARRLASLHGFYDYLVNQVNRLSEDPTAAIR 137

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             K+   LP+ L  +Q+++L+++    +    +     +  ++ L   CG+R++E + + 
Sbjct: 138 PPKQDKVLPKYLTAEQSISLLESTQTQSDFPER-----DYCMVVLFLNCGMRLAELVGMD 192

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGI-RG 235
             +I  +Q  +R+ GKG K R+V L  +  +A+  Y         L+  +  +F    R 
Sbjct: 193 LGDIDLEQRQIRLFGKGHKERMVYLNNACVEALQLYLRKRNTMEGLSPKEKAVFITRMRK 252

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLST 294
           + ++    ++ I    +  GL    + H LRH+ AT +   G  D+ +++ +LGH  + T
Sbjct: 253 ERISNRRVEQLISGAMKAAGL-KGFSTHKLRHTAATLMYQTGNVDILTLKQLLGHSSVGT 311

Query: 295 TQIYTNVNSKNGGDWMME 312
           TQIYT++        + E
Sbjct: 312 TQIYTHLQEFQVRSAIEE 329


>gi|220929076|ref|YP_002505985.1| site-specific tyrosine recombinase XerC [Clostridium cellulolyticum
           H10]
 gi|219999404|gb|ACL76005.1| integrase family protein [Clostridium cellulolyticum H10]
          Length = 330

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 90/331 (27%), Positives = 160/331 (48%), Gaps = 29/331 (8%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE---------- 55
           +  I  FE+    +++L  L+  +G SK T+Q Y  D R FL FL  +            
Sbjct: 1   MKNIFDFEMPLVLKDFLNYLQTIKGKSKNTIQVYFYDLRIFLRFLKIHRNLVDKNIEFNS 60

Query: 56  ---EKITIQTIRQLSYTEIRAFISKRRTQKIGDRS-LKRSLSGIKSFLKYLKKR-KITTE 110
                + I  ++ ++ +++  ++S    ++        R ++ +KSF  YL  + K+   
Sbjct: 61  IDITDVDISLLKTVTLSDLYTYMSFVSNKRDNTSHARARKVASLKSFFNYLSTKAKLLDI 120

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
           +  + + + K    LPR LN  ++  L    L   +        R+ AI+ +   CG+R+
Sbjct: 121 NPTIELESPKILKRLPRYLNFDESKKL----LTSVNKADHEYAIRDYAIITIFLNCGIRL 176

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
           SE + +   NI D+  TL + GKG K R +PL  +  +AI +Y  + P +  L  +  LF
Sbjct: 177 SELVGINLHNIKDN--TLIVFGKGGKERSIPLNRACLQAIDDYLKVRPVN-GLKDKSALF 233

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNG-GDLRSIQSILG 288
              R + ++    Q+ +++     GL P   + H LRH+ AT +   G  D+R++Q ILG
Sbjct: 234 ISRRNQRISKESVQKIVKRYITEAGLDPQRYSTHKLRHTAATLMYKYGNVDIRALQEILG 293

Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           H  +STT+IYT+++ +     + E  D+ HP
Sbjct: 294 HESISTTEIYTHLDQQQ----LKEAVDK-HP 319


>gi|332295545|ref|YP_004437468.1| Tyrosine recombinase xerC [Thermodesulfobium narugense DSM 14796]
 gi|332178648|gb|AEE14337.1| Tyrosine recombinase xerC [Thermodesulfobium narugense DSM 14796]
          Length = 306

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 80/302 (26%), Positives = 131/302 (43%), Gaps = 16/302 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K    ++  L   RG S+ T+ SY  D + F  F      + + I+ +       +  + 
Sbjct: 11  KALHAFVSYLFFIRGYSENTVNSYRSDIKSFFNFFKDRINDTVDIEKL-------LLYYS 63

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +   +      SL+R L  IK FL +  +     +  I ++   KK   LP  L+     
Sbjct: 64  NYLISNNYKASSLERKLVAIKQFLIFSFQEGYY-KGKIPDIVLPKKDKRLPFFLSRSDIF 122

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            + + +       +K    R+  I  +LY  G+RISE L+L   N+  +   +R+ GKG 
Sbjct: 123 NIFNFI-----SNSKQFTIRDLLIFKMLYFTGMRISELLNLKIDNVNFESMDIRVLGKGS 177

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RI+P    +      Y       L    +  +F   +GKPL+     +  +++  +L 
Sbjct: 178 KERIIPFHRDILDLFNSYLIFRQESLKPKCEN-IFVNSKGKPLSRQYIWKMCKKVGNFLN 236

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L      H  RHS ATHLLS G  +++IQ ILGH  +STTQIYT++  +         + 
Sbjct: 237 LE--LHPHIFRHSLATHLLSGGASIKTIQEILGHESISTTQIYTHLIYEELKKEYFRAFK 294

Query: 316 QT 317
             
Sbjct: 295 NF 296


>gi|251771081|gb|EES51665.1| phage integrase family protein [Leptospirillum ferrodiazotrophum]
          Length = 324

 Score =  209 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 78/308 (25%), Positives = 132/308 (42%), Gaps = 19/308 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E+ +    + + L + +  +  T+ +Y  D R F   L           ++       + 
Sbjct: 8   EVERLLDRFEEELLLAKKRAPNTVTAYLTDLRTFSRHLTREG------VSLLDFDGEALT 61

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            ++ +R    +  RS  R LS ++++ ++L+   +  +         +   SLP+ L++ 
Sbjct: 62  PYLERRGD--LSVRSRARFLSSVRAWTRFLELSGVR-KDPRETPPAPRLPRSLPKILSQD 118

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L++          +    R+ AIL   Y  GLR+SE  ++T   +      LR+ G
Sbjct: 119 EVERLIE-----APDPHRPEGVRDRAILSFFYASGLRVSELATITADRVDLATGALRVMG 173

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K RI  L    R  + +Y               LF    G PL        I++  R
Sbjct: 174 KGAKERIAFLDERTRHLLSDYLTT-VRPAFAREHPELFLARDGAPLTRQALWTLIKKHGR 232

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    + H LRHSFATHLL  G D+RSIQ +LGH  + TT+IYT+V+  +  + +  
Sbjct: 233 AAGITSPLSPHVLRHSFATHLLEKGLDIRSIQLLLGHEDIRTTEIYTHVSLAHLENTLK- 291

Query: 313 IYDQTHPS 320
                HP 
Sbjct: 292 ---LHHPR 296


>gi|307267401|ref|ZP_07548893.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306917586|gb|EFN47868.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 330

 Score =  209 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 79/325 (24%), Positives = 151/325 (46%), Gaps = 32/325 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-------------KITIQTIR 64
            + +L      +  S  T+++Y  D   FL FL     +              + +  I 
Sbjct: 21  LEEFLNYFSTVKARSYNTVKAYAYDLVLFLRFLKQRRGKVSPNVEFDEIDISDVDVDLIE 80

Query: 65  QLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKS 122
            +   ++ A+++    ++     +  R ++ ++SF  YL K+ K+ +++    + + K S
Sbjct: 81  SVDLNDLYAYLNFVANERSNTPPARARKVASLRSFYNYLYKKAKVLSKNPTQELESPKLS 140

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
              P  L   ++  L++++             R+ AI+ L   CGLR+SE +++   +I 
Sbjct: 141 VRQPIYLTLDESKKLLNSI-------DGPFKERDYAIITLFLNCGLRVSELVNINLDDIK 193

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           DD+  L + GKG+K R V L  +   AI  Y  + P +  +  +  LF   R K ++   
Sbjct: 194 DDK--LTVIGKGNKQRTVYLNDACINAINTYLKVRPKE-GVKDKKALFLSKRLKRISVKT 250

Query: 243 FQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTN 300
            Q  +++  +   L     +AH LRH+ AT +   G  D+R++Q +LGH  +STTQIYT+
Sbjct: 251 VQYTVKKHLKNANLEGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTH 310

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKD 325
           V+       + E  ++ +P   ++D
Sbjct: 311 VDDSQ----LKEAVNK-NPLSQKED 330


>gi|307718588|ref|YP_003874120.1| DNA integration/recombination/invertion protein [Spirochaeta
           thermophila DSM 6192]
 gi|306532313|gb|ADN01847.1| DNA integration/recombination/invertion protein [Spirochaeta
           thermophila DSM 6192]
          Length = 299

 Score =  209 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 80/309 (25%), Positives = 138/309 (44%), Gaps = 21/309 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + +  +L  E G S+LT ++Y     +F  +L     E      +  +S      FI
Sbjct: 7   RLLRRYRTHLVAELGRSRLTEETYLPLCERFCAWLECRGLE------VGTVSRRTCEEFI 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
              R +    R++ + +S ++SF ++L    +  ++ +  M   + S +LPR        
Sbjct: 61  VDERGEGKETRTIAKEMSALRSFFRFLVLEGVRPDNPLEEMDAPRISRTLPRV-----LE 115

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
                +LL           R+  +L +LY CGLR+SEA  L  Q+I   +  ++++GKG+
Sbjct: 116 EEEVEILLEAVDTAPPEGMRDRCLLEVLYSCGLRVSEACGLDLQDIFLSEGFVKVRGKGE 175

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNI----QLPLFRGIRGKPLNPGVFQRYIRQLR 251
           K R+VP        +  Y       L        +  +F    G+ L+       +++L 
Sbjct: 176 KERLVPFGKEAGHWMRRYLSEARPVLAARRPGSREQAVFLNRWGRRLSRKGAWIRLKRLV 235

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+      HT RH+ ATHLL  G +LR +Q  LGH  +STTQIYT+V+++     + 
Sbjct: 236 AASGVDAKL--HTFRHTCATHLLHGGANLREVQEFLGHADISTTQIYTHVDARR----LA 289

Query: 312 EIYDQTHPS 320
             +   HP 
Sbjct: 290 SYHHMYHPR 298


>gi|242399198|ref|YP_002994622.1| Probable tyrosine recombinase xerC-like protein [Thermococcus
           sibiricus MM 739]
 gi|242265591|gb|ACS90273.1| Probable tyrosine recombinase xerC-like protein [Thermococcus
           sibiricus MM 739]
          Length = 278

 Score =  209 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 85/296 (28%), Positives = 139/296 (46%), Gaps = 38/296 (12%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   LE+E G S  T++ Y     +FL             + +   +Y     F++K
Sbjct: 5   IEEFKTYLELE-GKSPQTVRMYTYYVERFL-------------KDVENPNYRSALRFLAK 50

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            + +   ++SL   +  +KS+ ++     +  +     +++ K   SLP++L  +    L
Sbjct: 51  LKKEGYSNKSLNLVVQALKSYFRF---EGLDED--AEKLKSPKVPRSLPKSLTREDVKRL 105

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDK 196
           ++ V             R+  I+ LLYG GLR+SE  +L  ++I  ++  L ++G KG K
Sbjct: 106 LNAV--------PPTRKRDRLIILLLYGTGLRVSEVCNLKIKDIDFNRGVLTVEGGKGAK 157

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG---KPLNPGVFQRYIRQLRRY 253
            RIVPL  S+ K I +Y +        +    LF  IR      ++P      +++    
Sbjct: 158 DRIVPLSGSLLKEIEKYLETR-----KDGSEYLFVEIRREKKDKISPKTVWYLLKKYGNK 212

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +  S T H LRHSFATH+L  G D+R IQ ILGH  LSTTQIYT V  ++    
Sbjct: 213 ANV--SVTPHMLRHSFATHMLERGVDIRVIQEILGHSSLSTTQIYTKVTVEHLKKA 266


>gi|124516260|gb|EAY57768.1| putative phage integrase family protein [Leptospirillum rubarum]
 gi|206603101|gb|EDZ39581.1| Putative phage integrase family protein [Leptospirillum sp. Group
           II '5-way CG']
          Length = 321

 Score =  209 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 85/288 (29%), Positives = 142/288 (49%), Gaps = 16/288 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
              +++L+ L  + G S  TL +Y  D   F  FL    ++  +  +I     T   +++
Sbjct: 24  DAVRDFLEELA-QSGHSPRTLMAYRRDLDAFRRFLLLRGKDSPSDPSI---DRTLALSYL 79

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                Q+   RS+ R LS ++SF ++L ++     +   ++   ++  ++P  L+E++  
Sbjct: 80  FDLEQQEYRPRSVLRILSSLRSFYQWLCRKGRCPSNPFEDLSGPRRPKTVPTVLSEREMA 139

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           TL+++          W D R++ +L L Y  G+R+SE   L   ++      ++++GKG+
Sbjct: 140 TLLESR-----PGNSWEDRRDTVMLELFYLTGIRLSELAGLVRGDLSPGMDRIQVRGKGN 194

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF-RGIRGKPLNPGVFQRYIRQLRRYL 254
           K R+VPLL   R+ + ++              PLF     G+ L+     R +R+  R  
Sbjct: 195 KERMVPLLGLTRELLRDFLSE-----EGGPGAPLFAVSPGGEALSVHQIGRIVRRRVRLS 249

Query: 255 GL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           GL     T HT RHS ATHLL  G DLR IQ +LGH  L TTQ YT+V
Sbjct: 250 GLGDRGVTPHTFRHSCATHLLDRGMDLRKIQELLGHQSLGTTQKYTHV 297


>gi|313888282|ref|ZP_07821953.1| phage integrase, N-terminal SAM domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845685|gb|EFR33075.1| phage integrase, N-terminal SAM domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 329

 Score =  209 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 92/333 (27%), Positives = 158/333 (47%), Gaps = 33/333 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-------------EKITIQTIR 64
             ++L  ++  +G S  T++ Y  D R F  F+                  E I+   + 
Sbjct: 7   IDDFLDYMKSTKGASDNTVKEYYYDLRMFARFIKRRKGLVDSKIEFDHITIEDISPDLLE 66

Query: 65  QLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKS 122
            ++  +I A+ +   R +KI +RS  R +S I+SF  YL  +  I   + ++++   K  
Sbjct: 67  SVTKQDIYAYNAFLERERKISNRSKFRKISSIRSFYNYLHAKIDIIKINPVIDIDMPKVE 126

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            +LP  L   Q+L L+    +  S        R+ AI+ L   CG+R+SE   +   ++ 
Sbjct: 127 KTLPVYLTLDQSLNLLKT--IEESKIKPLYKKRDYAIVTLFLNCGMRLSELAGMDISHLQ 184

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
            D  TL++ GKG+K R++ L  +   AI EY  L P   +      LF  +R + ++   
Sbjct: 185 QDN-TLKVIGKGNKERVIYLNEASVYAIEEYLKLRPQIKD----DALFLSMRQQRMSNRS 239

Query: 243 FQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTN 300
            Q  I +  +  GL  +  + H LRH+ AT L   G  D+R++Q ILGH  ++TT+IYT+
Sbjct: 240 IQHMIEKHMKNSGLDTNIYSVHKLRHTAATLLYEYGNADIRALQEILGHESVNTTEIYTH 299

Query: 301 VNSKNGGDWMMEIYD-----QTHPSITQKDKKN 328
           VN K     + ++ D     + +    +KD+ N
Sbjct: 300 VNKK----ALRKMVDSNPLSKLNNYTNKKDENN 328


>gi|42526714|ref|NP_971812.1| integrase/recombinase XerD [Treponema denticola ATCC 35405]
 gi|41817029|gb|AAS11723.1| integrase/recombinase XerD [Treponema denticola ATCC 35405]
          Length = 274

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 75/268 (27%), Positives = 138/268 (51%), Gaps = 14/268 (5%)

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
           +E ++   I   +  +   FI  R    I  +++ + ++ + SF ++L    +  ++   
Sbjct: 5   QEHMSDSLIENATEADCIDFILHRSESGIMAKTIAKDIAALNSFFRFLIIEGVRKDNPSE 64

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           ++   K+  +LPR L+  +  +L   + L + +     + R+ A+  L+Y  GLR+SE +
Sbjct: 65  SIERPKREKTLPRVLSPDEVDSLFAAIPLDSPN-----NIRDRALFELIYSAGLRVSEIV 119

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-------NLNIQL 227
           +L  ++I  D+  +++ GKG+K RIVP   + +  + +Y      +L       N  I  
Sbjct: 120 NLKMEDIFYDEDLIKVTGKGNKERIVPFGSAAKYWLKQYILEARTELLKPKHPENTLISG 179

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
            +F   RG  L      + I +L  + G+      HTLRHS+ATHLL+ G DLRS+Q +L
Sbjct: 180 SVFLNNRGAVLTRKGIWKRINELSNFSGIETKV--HTLRHSYATHLLAGGADLRSVQCLL 237

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           GH  +STTQ+YT++  K+   +  + +D
Sbjct: 238 GHSDISTTQVYTHIEDKSLQMYHNKFFD 265


>gi|33242394|ref|NP_877335.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae
           TW-183]
 gi|33236905|gb|AAP98992.1| tyrosine recombinase [Chlamydophila pneumoniae TW-183]
 gi|269302825|gb|ACZ32925.1| tyrosine recombinase XerD [Chlamydophila pneumoniae LPCoLN]
          Length = 299

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 145/305 (47%), Gaps = 20/305 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   L ++RGL + ++ +Y  D   FL   A        I + + +S   +  F  +
Sbjct: 11  LEQFSLFLSVDRGLCQQSIAAYRQDISSFLTISA--------ISSPQDISQNSVYIFAEE 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +K  + +L R L  +K F  +LK +++     I  + + K    LP  L  ++   L
Sbjct: 63  LYRRKEAETTLARRLIALKVFFLFLKDQQLLPYPPI--IEHPKIWKRLPSVLTPQEVDAL 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +  V L      + +  R++AIL+ LY  G+R+SE   L   ++ DD   +R+ GKG K 
Sbjct: 121 L-AVPLQMEKNPRHLAFRDTAILHTLYSTGVRVSELCDLRLGHVSDD--CIRVTGKGSKT 177

Query: 198 RIVPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R+VPL    R+AI  Y       +      +  LF   RG  L      R I    + + 
Sbjct: 178 RLVPLGSRAREAIDAYLCPFRDQYQKKNPHEDHLFLSTRGHKLERSCVWRRIHNYAKQVT 237

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H+LRH+FATHLL N  DLR IQ +LGH R+++T++YT+V      D ++E + 
Sbjct: 238 -SKPVSPHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHV----AADSLIEKFL 292

Query: 316 QTHPS 320
             HP 
Sbjct: 293 AHHPR 297


>gi|213019194|ref|ZP_03335001.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|212995303|gb|EEB55944.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 278

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 100/286 (34%), Positives = 159/286 (55%), Gaps = 10/286 (3%)

Query: 41  CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLK 100
            D +  + FL  +  E++ + ++ +LS  E+R++ + R  + +  RS  R+LS I++F K
Sbjct: 2   RDLKDLISFLNTHIGEEVNVGSLEKLSIPELRSWFTSRYARGVNARSNTRALSVIRNFFK 61

Query: 101 YLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
           Y+K         + ++    +  +LP+AL+     TL+  + L       W+  R  AI+
Sbjct: 62  YIKNNYEINNEAVFSLSRPIQRRTLPKALSISNIETLLKEMKL-PDLGEPWVVKREIAIV 120

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
            LLYG GLRI+EAL+L   +I ++  +L + GKGDK R V +LP V+K I +Y   CP  
Sbjct: 121 VLLYGTGLRITEALNLKVSDISNE--SLIVTGKGDKQRQVFILPVVKKCIQKYIKACPH- 177

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
              +    LF G+RGK L        ++++RR+L LP   + H  RHSFATHLL    D+
Sbjct: 178 --FDEAGHLFVGVRGKKLGRTYVANRLQKIRRFLNLPEILSPHAFRHSFATHLLQEDIDI 235

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
           RSIQ +LGH  L TTQ+YT++N ++  +    +Y     S+ +K K
Sbjct: 236 RSIQQLLGHSSLETTQVYTHLNYQDVFN----MYKNFQKSLNKKSK 277


>gi|307265141|ref|ZP_07546700.1| tyrosine recombinase XerD [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919763|gb|EFN49978.1| tyrosine recombinase XerD [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 290

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 74/287 (25%), Positives = 130/287 (45%), Gaps = 19/287 (6%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           TL+SY  D  QFL +L         ++       + I  ++   + +     ++ R+LS 
Sbjct: 23  TLESYNRDINQFLNYLEEIGINCYNVK------KSTILNYLYYLKKKGKSQATVSRNLSS 76

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +K+F  YL  +K   E     +   K     P  L  +Q      ++LL           
Sbjct: 77  LKAFYHYLFMKKKIEEDPTYMINTPKVEKKQPTTLTVEQV-----DMLLSLDFGDDEKGL 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A++ LLY  GL++SE +SL  +++      + I+   +K R++P+     +A+  Y 
Sbjct: 132 RDKALIELLYATGLKVSEVISLKLEDVNLSYGYVVIRS--NKERVIPIGSHAIEALKNYI 189

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           +        N +  LF  +RG+ L      + IR+    +      T +TLR SFA H+L
Sbjct: 190 EKG--RKAKNGENTLFLNLRGQKLTRQGCWKIIREYTDKINPGFPVTPNTLRQSFAQHML 247

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            NG D+R++Q +LG+     T + TN+ S      + E+Y++ HP  
Sbjct: 248 QNGADIRAVQEMLGYQ----TDLNTNLLSLISKSKIKEVYNKFHPRA 290


>gi|15618932|ref|NP_225218.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae
           CWL029]
 gi|15836555|ref|NP_301079.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae
           J138]
 gi|16752001|ref|NP_445367.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae
           AR39]
 gi|34223088|sp|Q9Z6N5|XERD_CHLPN RecName: Full=Tyrosine recombinase xerD
 gi|4377356|gb|AAD19161.1| Integrase/recombinase [Chlamydophila pneumoniae CWL029]
 gi|7189741|gb|AAF38621.1| integrase/recombinase XerD [Chlamydophila pneumoniae AR39]
 gi|8979397|dbj|BAA99231.1| integrase/recombinase [Chlamydophila pneumoniae J138]
          Length = 301

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 145/305 (47%), Gaps = 20/305 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   L ++RGL + ++ +Y  D   FL   A        I + + +S   +  F  +
Sbjct: 13  LEQFSLFLSVDRGLCQQSIAAYRQDISSFLTISA--------ISSPQDISQNSVYIFAEE 64

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +K  + +L R L  +K F  +LK +++     I  + + K    LP  L  ++   L
Sbjct: 65  LYRRKEAETTLARRLIALKVFFLFLKDQQLLPYPPI--IEHPKIWKRLPSVLTPQEVDAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +  V L      + +  R++AIL+ LY  G+R+SE   L   ++ DD   +R+ GKG K 
Sbjct: 123 L-AVPLQMEKNPRHLAFRDTAILHTLYSTGVRVSELCDLRLGHVSDD--CIRVTGKGSKT 179

Query: 198 RIVPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R+VPL    R+AI  Y       +      +  LF   RG  L      R I    + + 
Sbjct: 180 RLVPLGSRAREAIDAYLCPFRDQYQKKNPHEDHLFLSTRGHKLERSCVWRRIHNYAKQVT 239

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                + H+LRH+FATHLL N  DLR IQ +LGH R+++T++YT+V      D ++E + 
Sbjct: 240 -SKPVSPHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHV----AADSLIEKFL 294

Query: 316 QTHPS 320
             HP 
Sbjct: 295 AHHPR 299


>gi|167040193|ref|YP_001663178.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X514]
 gi|300914277|ref|ZP_07131593.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X561]
 gi|307724487|ref|YP_003904238.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X513]
 gi|166854433|gb|ABY92842.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X514]
 gi|300889212|gb|EFK84358.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X561]
 gi|307581548|gb|ADN54947.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X513]
          Length = 290

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 75/287 (26%), Positives = 132/287 (45%), Gaps = 19/287 (6%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           TL+SY  D +QFL +L     E   ++       + I  ++   + +     ++ R+LS 
Sbjct: 23  TLESYNRDIKQFLNYLEEIEFEYYNVK------KSTILNYLYYLKKKGKSQATVSRNLSS 76

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +K+F  YL  +K   E     +   K     P  L  +Q      ++LL           
Sbjct: 77  LKAFYHYLFMKKKIEEDPTYMINTPKVEKKPPATLTVEQV-----DMLLSIDFGNDEKGL 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A++ LLY  GL++SE +SL  +++      + I+   +K R++P+     +A+  Y 
Sbjct: 132 RDKALIELLYATGLKVSEVISLKLEDVNLSYGYVVIRS--NKERVIPIGSHAIEALKNYI 189

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           +        N +  LF  +RG+ L      + IR+    +      T +TLR SFA H+L
Sbjct: 190 EKG--RKAKNGENTLFLNLRGEKLTRQGCWKIIREYTDKINPGFPVTPNTLRQSFAQHML 247

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            NG D+R++Q +LG+     T + TN+ S      + E+Y++ HP  
Sbjct: 248 QNGADIRAVQEMLGYQ----TDLNTNLLSLISKSKIKEVYNKFHPRA 290


>gi|289596337|ref|YP_003483033.1| integrase family protein [Aciduliprofundum boonei T469]
 gi|289534124|gb|ADD08471.1| integrase family protein [Aciduliprofundum boonei T469]
          Length = 284

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 76/302 (25%), Positives = 134/302 (44%), Gaps = 36/302 (11%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E + + + L  E+  S+ T++ Y       L +     E          ++  ++  +  
Sbjct: 12  ELEKFKEYLRGEKR-SENTIKEYAHFISDMLRYFHKRAE---------DITPGDLNKYKM 61

Query: 77  KRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
              T +K    SL  +   I+S+ KY             N+ + K+   +P+ L+E +  
Sbjct: 62  YLSTKRKYSKNSLYLATKAIRSYFKYKNL------DTAKNLSSPKRPRQMPKYLSEDEVK 115

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKG 194
            L++             + R+ AI+ LL   GLR+SE  +L  +++  ++  + +  GKG
Sbjct: 116 RLIEA---------SSENPRDYAIISLLAYSGLRVSELCNLKIEDVDFNERIVYVHSGKG 166

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           DK RIV + P V +A+  Y      D+       LF   +   ++     R +++     
Sbjct: 167 DKDRIVVVSPRVIEALQNYLYTREDDME-----YLFASQKSNKISRVQVFRIVKKYAEKA 221

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+    T H LRH+ AT LL  G D+R IQ  LGH  ++TTQIYT+V+       +  +Y
Sbjct: 222 GIKKEVTPHVLRHTLATTLLRRGVDIRFIQQFLGHSSVATTQIYTHVDDA----LLKSVY 277

Query: 315 DQ 316
           D+
Sbjct: 278 DK 279


>gi|260438241|ref|ZP_05792057.1| tyrosine recombinase XerD [Butyrivibrio crossotus DSM 2876]
 gi|292809434|gb|EFF68639.1| tyrosine recombinase XerD [Butyrivibrio crossotus DSM 2876]
          Length = 306

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 75/309 (24%), Positives = 136/309 (44%), Gaps = 21/309 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + ++   + ++ L + TL +Y+ D +QF   L           +I  ++   +  +IS 
Sbjct: 8   FEEYISFCQYQKRLDRKTLNAYKTDLKQFSQQLHSI--------SIEAVTPDMLENYISH 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALT 136
              Q    +++KR ++ +K+F  YLK ++I   +    +    ++   LP+ +  +   T
Sbjct: 60  LH-QSYKSKTVKRKIASLKAFFHYLKYKEIIDRNPFDKIHVKFREPVILPKTIPLRTVET 118

Query: 137 LV----DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
            +           +   +    R+ A++ LL+  G+RISE  SL   ++     T+ I G
Sbjct: 119 FLATIYHQRNCAKTTYQRRNAIRDIAVIELLFSTGIRISELCSLNVNDVNLQDGTILIYG 178

Query: 193 KGDKIRIVPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG K R + +    V   +LEY     + + +      F    G+ L+    +R I +  
Sbjct: 179 KGSKERCMHIGNDKVLSVLLEYKQE--YSIEIQNCKHFFVNQSGRFLSDQAVRRMINKYS 236

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               + L  T H  RH+FAT LL    D+R IQ +LGH  ++ T+IYT+V      D + 
Sbjct: 237 ALAAIELHITPHMFRHTFATCLLEADVDIRYIQEMLGHSSINITEIYTHVAMSKKKDILT 296

Query: 312 EIYDQTHPS 320
                 HP 
Sbjct: 297 ----TKHPR 301


>gi|103487281|ref|YP_616842.1| phage integrase [Sphingopyxis alaskensis RB2256]
 gi|98977358|gb|ABF53509.1| phage integrase [Sphingopyxis alaskensis RB2256]
          Length = 303

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 85/310 (27%), Positives = 143/310 (46%), Gaps = 23/310 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L+ +  ERG S+ TL +Y  D  Q    +            +       +R  ++ 
Sbjct: 7   IDRFLEMMAAERGASRNTLTAYRRDLEQAAERVKG---------PLGAADAAALRQLMAD 57

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R+  +   S  R LS ++ F  +L       ++  L++        LPR L   +   L
Sbjct: 58  YRS--LSASSAARKLSALRQFFAFLLDEGERADNPALDIARPATRRPLPRILTHDEIRRL 115

Query: 138 VDNVLLHTSHETKWIDARN-SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
            +  +     E     A     +L LLYG GLR +E +SL  + ++ ++  L ++GKGDK
Sbjct: 116 FEQAVAEAEGEAPPAGAVRMLLLLELLYGSGLRATELVSLPRRAVLREREYLIVRGKGDK 175

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+VPL    R A   +       L  +    LF   +   ++     + +R L    G+
Sbjct: 176 ERLVPLSARARAAFDRWLP-----LLADGSPWLFPSGKA-HISRVRLFQMLRDLAARAGV 229

Query: 257 -PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            P + + H LRH+FATHLL  G DLR++Q +LGH  ++TT+IYT+V+S+     ++E+ +
Sbjct: 230 DPAAVSPHVLRHAFATHLLEGGADLRALQLMLGHADIATTEIYTHVDSRR----LVELVN 285

Query: 316 QTHPSITQKD 325
           + HP     D
Sbjct: 286 RRHPLAHMDD 295


>gi|325473776|gb|EGC76964.1| integrase/recombinase XerD [Treponema denticola F0402]
          Length = 267

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 74/260 (28%), Positives = 134/260 (51%), Gaps = 14/260 (5%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           I   +  +   FI  R    I  +++ + ++ + SF ++L    +  ++   ++   K+ 
Sbjct: 6   IENATEADCIDFILHRSESGIMAKTIAKDIAALNSFFRFLIIEGVRKDNPSESIERPKRE 65

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            +LPR L+  +  +L   + L + +     + R+ A+  L+Y  GLR+SE ++L  ++I 
Sbjct: 66  KTLPRVLSPDEVDSLFAAIPLDSPN-----NIRDRALFELIYSAGLRVSEIVNLKMEDIF 120

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-------NLNIQLPLFRGIRG 235
            D+  +++ GKG+K RIVP   + +  + +Y      +L       N  I   +F   RG
Sbjct: 121 YDEDLIKVTGKGNKERIVPFGSAAKYWLKQYILEARTELLKPKHPENTLISGSVFLNNRG 180

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             L      + I +L  + G+      HTLRHS+ATHLL+ G DLRS+Q +LGH  +STT
Sbjct: 181 AVLTRKGIWKRINELSNFSGIETKV--HTLRHSYATHLLAGGADLRSVQCLLGHSDISTT 238

Query: 296 QIYTNVNSKNGGDWMMEIYD 315
           Q+YT++  K+   +  + +D
Sbjct: 239 QVYTHIEDKSLQMYHNKFFD 258


>gi|315230922|ref|YP_004071358.1| phage integrase [Thermococcus barophilus MP]
 gi|315183950|gb|ADT84135.1| phage integrase [Thermococcus barophilus MP]
          Length = 276

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 81/293 (27%), Positives = 137/293 (46%), Gaps = 32/293 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   LE+E G S+ T++ Y    ++FL             +    L+      F++ 
Sbjct: 3   IEEFEMYLELE-GKSQNTVRMYSYYVKKFL-------------EEGNDLNARSALRFLAV 48

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            +     ++SL   +  +K++ ++    +         +++ K   SLP++L +++   L
Sbjct: 49  LKRSGYSNKSLNLVVQALKAYFRFEGLEEE-----AKKIKSPKVPRSLPKSLTKEEVKKL 103

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDK 196
           +  +             R+  I+ LLYG GLR+SE  +L   ++   +S + ++G KG K
Sbjct: 104 LSVI--------PPTRKRDRLIVLLLYGSGLRVSELCNLKINDVDFKRSLIIVRGGKGGK 155

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            RIVP+  ++ K I +Y  +   D      L   R  R   L+P      + +  +  G+
Sbjct: 156 DRIVPVPGALLKEIEDYLKMRNDD--SEYLLVEERRSRKDRLSPKTVWYILNKYGKKAGI 213

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
               T H LRHSFATH+L NG D+R IQ ILGH  LSTTQIYT V  ++    
Sbjct: 214 --KVTPHMLRHSFATHMLENGIDIRVIQEILGHSNLSTTQIYTKVTVEHLRRA 264


>gi|254166742|ref|ZP_04873596.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|197624352|gb|EDY36913.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
          Length = 279

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 76/302 (25%), Positives = 134/302 (44%), Gaps = 36/302 (11%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E + + + L  E+  S+ T++ Y       L +     E          ++  ++  +  
Sbjct: 7   ELEKFKEYLRGEKR-SENTIKEYAHFISDMLRYFHKRAE---------DITPGDLNKYKM 56

Query: 77  KRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
              T +K    SL  +   I+S+ KY             N+ + K+   +P+ L+E +  
Sbjct: 57  YLSTKRKYSKNSLYLATKAIRSYFKYKNL------DTAKNLSSPKRPRQMPKYLSEDEVK 110

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKG 194
            L++             + R+ AI+ LL   GLR+SE  +L  +++  ++  + +  GKG
Sbjct: 111 RLIEA---------SSENPRDYAIISLLAYSGLRVSELCNLKIEDVDFNERIVYVHSGKG 161

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           DK RIV + P V +A+  Y      D+       LF   +   ++     R +++     
Sbjct: 162 DKDRIVVVSPRVIEALQNYLYTREDDME-----YLFASQKSNKISRVQVFRIVKKYAEKA 216

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+    T H LRH+ AT LL  G D+R IQ  LGH  ++TTQIYT+V+       +  +Y
Sbjct: 217 GIKKEVTPHVLRHTLATTLLRRGVDIRFIQQFLGHSSVATTQIYTHVDDA----LLKSVY 272

Query: 315 DQ 316
           D+
Sbjct: 273 DK 274


>gi|254172394|ref|ZP_04879069.1| integrase/recombinase [Thermococcus sp. AM4]
 gi|214033323|gb|EEB74150.1| integrase/recombinase [Thermococcus sp. AM4]
          Length = 283

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 80/301 (26%), Positives = 138/301 (45%), Gaps = 32/301 (10%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++ E     + +   L++E G S  T++ Y    R++L                  L + 
Sbjct: 1   MNGEHSTVIEEFATYLDLE-GKSPNTIRMYTYYVRRYLEQGGG-------------LDFR 46

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
               F+++ R +   +RSL   +  ++++ ++     +  E     ++  K   SLP+AL
Sbjct: 47  SALRFLARLRREGYSNRSLNLVVQALRAYFRF---EGLDEE--AEKLKPPKVPKSLPKAL 101

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
             ++   ++  + L           R+  I+ LLYG GLR+SE  +L   ++  D+  + 
Sbjct: 102 TPEEVRKILSVIPL--------TRRRDRLIVLLLYGAGLRVSELCNLKRGDVDLDRGIIT 153

Query: 190 IQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           ++G KG K R+VP+ P++ + I  Y        N    L   R      L+P      + 
Sbjct: 154 VRGGKGAKDRVVPISPALAEEIRAYL--RERKDNSEYLLVEVRRGTKDRLSPKTVWYLLN 211

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +  +  G+    T H LRHSFATH+L  G D+R+IQ +LGH  LSTTQIYT V  ++   
Sbjct: 212 RYGKKAGV--KVTPHMLRHSFATHMLERGVDIRAIQELLGHSNLSTTQIYTKVTVEHLKK 269

Query: 309 W 309
            
Sbjct: 270 A 270


>gi|167037592|ref|YP_001665170.1| site-specific tyrosine recombinase XerC [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256750822|ref|ZP_05491707.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|320116007|ref|YP_004186166.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166856426|gb|ABY94834.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|256750405|gb|EEU63424.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|319929098|gb|ADV79783.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 330

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 79/325 (24%), Positives = 151/325 (46%), Gaps = 32/325 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-------------KITIQTIR 64
            + +L      +  S  T+++Y  D   FL FL     +              + +  I 
Sbjct: 21  LEEFLNYFSTVKARSYNTVKAYAYDLVLFLRFLKQRRGKVSPDVEFDEIDISDVDVDLIE 80

Query: 65  QLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKS 122
            +   ++ A+++    ++     +  R ++ ++SF  YL K+ K+ +++    + + K S
Sbjct: 81  SVDLNDLYAYLNFVANERSNTPHARARKVASLRSFYNYLYKKAKVLSKNPTQELESPKLS 140

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
              P  L   ++  L++++             R+ AI+ L   CGLR+SE +++   +I 
Sbjct: 141 VRQPIYLTLDESKKLLNSI-------DGPFKERDYAIITLFLNCGLRVSELVNINLDDIK 193

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           DD+  L + GKG+K R V L  +   AI  Y  + P +  +  +  LF   R K ++   
Sbjct: 194 DDK--LTVIGKGNKQRTVYLNDACINAINTYLKVRPKE-GVKDKKALFLSKRLKRISVKT 250

Query: 243 FQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTN 300
            Q  +++  +   L     +AH LRH+ AT +   G  D+R++Q +LGH  +STTQIYT+
Sbjct: 251 VQYTVKKHLKNANLEGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTH 310

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKD 325
           V+       + E  ++ +P   ++D
Sbjct: 311 VDDSQ----LKEAVNK-NPLSQKED 330


>gi|119719024|ref|YP_919519.1| phage integrase family protein [Thermofilum pendens Hrk 5]
 gi|119524144|gb|ABL77516.1| phage integrase family protein [Thermofilum pendens Hrk 5]
          Length = 295

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 140/294 (47%), Gaps = 31/294 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++ +L + R  S+ T++S++    +F+ FL          + + Q++  ++  F++  R 
Sbjct: 20  YISHL-VARNRSEKTIKSFKSILEEFVRFLGD--------RHVSQVTVYDVDFFLAHLRR 70

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     S+  +   +K FL++L         NI      K+   LPR L  ++   +V+ 
Sbjct: 71  KGWKKDSIYTAAVAVKRFLEFLGLGG-----NIAGFELPKREKRLPRYLEAEEVFRMVNA 125

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                       + R+  I+ LL+  GLR+SE +SL   ++  ++ TLR++GKG K R+V
Sbjct: 126 ----------AENLRDKLIVLLLFTTGLRVSELVSLRVSDVDLEKRTLRVRGKGSKERLV 175

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
                V   +  Y      +        LF     + ++    +R +++L+   G+    
Sbjct: 176 YFPDYVADLLRSYMKGLNSE-------WLFPSETAEHIHYTTVERVLKRLKEKAGIEKKV 228

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           T HTLRHSFAT  L+ G D+R IQ +LGH  L+TTQ+Y +V+ +        ++
Sbjct: 229 TPHTLRHSFATLSLAAGLDIREIQELLGHSNLNTTQVYAHVSRERLKRDYERVW 282


>gi|253578208|ref|ZP_04855480.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850526|gb|EES78484.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 317

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 71/309 (22%), Positives = 143/309 (46%), Gaps = 21/309 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L+     + L + T+++Y  D  Q+  F+A    +K            +I  +I++  
Sbjct: 21  SYLEYCTYRKELDQKTVKAYRIDLNQYFTFVACEEPDK-----------EKIEEYITELH 69

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLV 138
            +K   +++KR ++ +K++  YL++ ++  ES    ++   K++  LPR +  ++   L+
Sbjct: 70  -KKYKQKTVKRKIASVKAYYSYLEENELIKESPFRKIKVKFKENLILPRIIPREEIEHLL 128

Query: 139 DN---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           ++    L   S        R+ A++ L +  G R+ E  ++  +N+  +   +++ GKG 
Sbjct: 129 NHMYGCLQQASETVYKYCLRDVAVIELFFATGARVYEISNIRAENVNLNTGLIQLMGKGA 188

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R V +  +    IL  Y        +      F   RG        +  +++     G
Sbjct: 189 KERYVQIGSTSVLNILRKYY-AENRAAIKKSGYFFVNGRGNRYTEQSIRLMLKKYTAQAG 247

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  + T H  RHSFAT+L+  G D+  +Q ILGH  + TTQIY +V ++   + + ++  
Sbjct: 248 IERNITPHMFRHSFATYLIEEGVDISCVQRILGHSSIKTTQIYIHVAARKQAEILRDM-- 305

Query: 316 QTHPSITQK 324
             HP    K
Sbjct: 306 --HPRNNMK 312


>gi|262038210|ref|ZP_06011604.1| tyrosine recombinase XerD [Leptotrichia goodfellowii F0264]
 gi|261747791|gb|EEY35236.1| tyrosine recombinase XerD [Leptotrichia goodfellowii F0264]
          Length = 315

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 82/301 (27%), Positives = 141/301 (46%), Gaps = 27/301 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   L  E+G SK T+  YE D + F  ++        +   I++    E      +
Sbjct: 34  IKEFSDYLSFEKGSSKNTVAGYERDLKIFFDYIQK------SATDIKEEDIYE----YIE 83

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             ++++   S+ R ++ I++F K+    K+  E     +++LK+   LP  LN K+  T+
Sbjct: 84  EISRELKRNSVLRKIASIRTFYKFCYLNKMVKEDPTGMIKSLKREKRLPEVLNLKEVKTI 143

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQGKGDK 196
           +DN+             R+  I+  L   G R+SE L+L  ++        +++ GKG K
Sbjct: 144 IDNI------GHTPEGMRDRLIIKFLIATGARVSEILNLNIKDVENQGYEFIKVLGKGSK 197

Query: 197 IRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            RIVP+  S+   I +Y  +  P          LF   R        F + +++  +  G
Sbjct: 198 YRIVPIYESLENEIKDYISNYRPKLKGSESSFKLFPDTR-----RENFWKRLKKTAKDAG 252

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  +   H  RHS AT LLSNG D+R +Q ILGH  +STT+IYT+V   +    +  IY+
Sbjct: 253 IEKNVYPHIFRHSVATVLLSNGADIRIVQEILGHANISTTEIYTHVEKSD----LKRIYN 308

Query: 316 Q 316
           +
Sbjct: 309 K 309


>gi|303242648|ref|ZP_07329122.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302589787|gb|EFL59561.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 298

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 141/299 (47%), Gaps = 15/299 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              ++  L+ E+ +S  T+ +Y  D +QFL FL     +      +  ++   IR +++ 
Sbjct: 7   FDEFIDYLKAEKDVSHYTVDNYTSDFKQFLNFLRVNGIQP----KLNTVTTPIIRRYLAH 62

Query: 78  RRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            +T K     +++R +  + S+ K+L +++   ++ +  +   K   ++P+ L+ ++   
Sbjct: 63  LKTDKNYAVETIRRRVHCLSSYYKFLMEQEYIMKNPMFAIHAPKSPETIPKYLSIEEIQL 122

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGD 195
           L+     ++         RN  I       G+R  E L L   +I   +  + ++ GKG 
Sbjct: 123 LLTMPQKYSPDSV----LRNLCIFECFLMTGMRRQELLDLNWDDIDFGEKIITVRNGKGK 178

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R++P+   +   + +Y        N      LF   +G  L+    ++  R   R  G
Sbjct: 179 KQRVIPMTEPLISDLWKYLQTRLPLTN----HALFISAKGNRLSATPLEQTFRLYMRKSG 234

Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           L     T HTLRH++A+HL  NG  + SIQ +LGH  L++TQIY +VN+++    + ++
Sbjct: 235 LDKKGYTIHTLRHTYASHLALNGASILSIQKLLGHSDLNSTQIYAHVNTEHLRSEVEKL 293


>gi|256752061|ref|ZP_05492929.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus CCSD1]
 gi|289578310|ref|YP_003476937.1| tyrosine recombinase XerD [Thermoanaerobacter italicus Ab9]
 gi|256749071|gb|EEU62107.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus CCSD1]
 gi|289528023|gb|ADD02375.1| tyrosine recombinase XerD [Thermoanaerobacter italicus Ab9]
          Length = 290

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 74/287 (25%), Positives = 132/287 (45%), Gaps = 19/287 (6%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           TL+SY  D +QFL +L         ++       + I  ++   + +     ++ R++S 
Sbjct: 23  TLESYNRDIKQFLNYLEEIGINYYNVK------KSTILNYLYYLKKKGKSQATVSRNVSS 76

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +K+F  YL  +K   E     +   K     P AL  +Q      ++LL           
Sbjct: 77  LKAFYHYLFMKKKIEEDPTYMINTPKVEKKPPTALTVEQV-----DMLLSIDFGNDEKGL 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A++ LLY  GL++SE +SL  +++      + I+   +K R++P+     +A+  Y 
Sbjct: 132 RDKALIELLYATGLKVSEVISLKLEDVNLSYGYVVIRS--NKERVIPIGSHAIEALKNYI 189

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           +        N +  LF  +RG+ L      + IR+    +      T +TLR SFA H+L
Sbjct: 190 EKG--RKAKNGENTLFLNLRGEKLTRQGCWKIIREYTDKINPGFPVTPNTLRQSFAQHML 247

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            NG D+R++Q +LG+     T + TN+ S      + E+Y++ HP  
Sbjct: 248 QNGADIRAVQEMLGYQ----TDLNTNLLSLISKSKIKEVYNKFHPRA 290


>gi|313114164|ref|ZP_07799716.1| site-specific tyrosine recombinase XerC family protein
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623573|gb|EFQ06976.1| site-specific tyrosine recombinase XerC family protein
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 401

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 67/318 (21%), Positives = 132/318 (41%), Gaps = 24/318 (7%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY-------------TEEKIT 59
           +   +   +++ LE+  G S  T  SY CD R F  F+                  + + 
Sbjct: 18  DAAPDIVEYVRYLEVIAGKSANTAFSYYCDLRGFSRFMKRRRGLVPEDSEMKDIDPKGLD 77

Query: 60  IQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMR 117
                 ++  +I  ++    R       S  R L+ +  F  YL  +           + 
Sbjct: 78  TAFWASVTKEDIYEYLYFLNRECGNKKSSTARRLASLHGFYDYLVNQVNRLGADPTAAIH 137

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             K+   LP+ L  +Q++ L+++    +    +     +  ++ L   CG+R++E + + 
Sbjct: 138 PPKQDKVLPKYLTAEQSMELLESTQTQSDFPER-----DYCMVTLFLNCGMRLAELVGMN 192

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGK 236
             +I  +   +R+ GKG K R+V L  +  +A+  Y       +  L  +  +F   R K
Sbjct: 193 LDDIDLENRQIRLFGKGHKERMVYLNDACMEALRLYLGKRNTMEGLLPQEKAVFITRRRK 252

Query: 237 -PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLST 294
             ++    ++ +    +  GL    + H LRH+ AT +   G  D+ +++ +LGH  +ST
Sbjct: 253 ERISNRRVEQLVTGAMKAAGL-KGFSTHKLRHTAATLMYQTGNVDILTLKQLLGHSNVST 311

Query: 295 TQIYTNVNSKNGGDWMME 312
           TQIYT++        + E
Sbjct: 312 TQIYTHLQEFQVRAAIEE 329


>gi|117928754|ref|YP_873305.1| phage integrase family protein [Acidothermus cellulolyticus 11B]
 gi|117649217|gb|ABK53319.1| tyrosine recombinase XerC subunit [Acidothermus cellulolyticus 11B]
          Length = 336

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 83/344 (24%), Positives = 147/344 (42%), Gaps = 40/344 (11%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
             +  L    + + ++L+ ER LS  T+++Y  D R  +        E++  +    L+ 
Sbjct: 2   ATTPSLGTAVELFARHLQYERSLSSHTVRAYLTDLRDLVDHA-----ERLGCREPADLTV 56

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R++++K  T      ++ R  +  + F  Y  K+   +      +   K    LP  
Sbjct: 57  AVLRSYLAKLDTVGRARTTIARRAAAARVFTAYCSKKGWMSHDPGRRLGTPKVVRPLPDV 116

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDA------------------------------RNSA 158
           L + QA  +++        + +                                  R+ A
Sbjct: 117 LTQAQARAVLERAEQRAGPDAEADAGAIGVPEDAREDAGAANAAQDVDTISLARRLRDRA 176

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           IL +LY  G+R+ E ++L   +I   ++ + + GKG+K R VP+     +A+ ++     
Sbjct: 177 ILEVLYATGIRVGELVALETDDIAWVRAVIHVIGKGNKERTVPIGQPALRAVEQWLRHGR 236

Query: 219 FDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
                      +F G+RG+ ++P   +R +    R L        H LRHS ATHLL  G
Sbjct: 237 PAFQTGASGSAIFLGVRGRRIDPREVRRVVYAATRDLPDAPRLGPHGLRHSAATHLLEGG 296

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            DLRS+Q ILGH  L+TTQ+YT+V+ +     +   YD+ HP  
Sbjct: 297 ADLRSVQEILGHATLATTQLYTHVSIER----LRATYDRAHPRA 336


>gi|28210981|ref|NP_781925.1| site-specific tyrosine recombinase XerC [Clostridium tetani E88]
 gi|28203420|gb|AAO35862.1| putative integrase, recombinase [Clostridium tetani E88]
          Length = 328

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 86/325 (26%), Positives = 152/325 (46%), Gaps = 27/325 (8%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-------- 56
            L  I   EL ++  N+L  L   +  S  T+ +Y+ D   F  FL  Y  +        
Sbjct: 3   KLKNIYDPELPQQLNNFLNYLTTVKERSPNTMSAYKVDLVMFFRFLKLYKTKLPKDIEFD 62

Query: 57  -----KITIQTIRQLSYTEIRAFISKRRTQKIGDRSL-KRSLSGIKSFLKYLKKR-KITT 109
                 I  + IR+++ T++ +F++     +        R ++ +KSF K+L  + KI  
Sbjct: 63  DIDISDIDDEFIRKITLTDLYSFMAFLDNYRDNGSYAKARKVATLKSFFKFLYSKVKILE 122

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
           E+  + + + K     P  L  +++  L+ ++            AR+  I+ L   CGLR
Sbjct: 123 ENPAIELESPKIKKRNPTYLTLEESKRLLASI-------DGTNKARDYCIITLFLNCGLR 175

Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLP 228
           +SE  S+    I +D  TL + GKG+K R + L  +  KA+ +Y  +   +L+    +  
Sbjct: 176 LSELCSIDISKIKED--TLYVIGKGNKERTIYLNKACLKAVEDYLKVRNKNLDKIKDKDA 233

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNG-GDLRSIQSI 286
           LF       +N    +  +++  +   L     T H LRH+ AT +  +G  D+RS+Q I
Sbjct: 234 LFISRNNTRINKRTVEIMLKKYLKKANLDEEKYTPHKLRHTAATLMYKHGDVDIRSLQKI 293

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMM 311
           LGH  +STTQIYT+V+++   + + 
Sbjct: 294 LGHENISTTQIYTHVDNEKLREAVK 318


>gi|330466299|ref|YP_004404042.1| integrase family protein [Verrucosispora maris AB-18-032]
 gi|328809270|gb|AEB43442.1| integrase family protein [Verrucosispora maris AB-18-032]
          Length = 376

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 89/375 (23%), Positives = 153/375 (40%), Gaps = 66/375 (17%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
              +   +   L      + ++L   R  S  T+++Y  D    L         ++    
Sbjct: 12  TRAVHAALPEPLRDAVDEFARHLASVRNRSAHTVRAYVADLVSLLDHA-----HRMGCAE 66

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           + +LS   +R++++K+RT      SL R  +  ++F  +  +  +        + + +  
Sbjct: 67  VAELSLDTVRSWLAKQRTMGAARASLARRAAAARTFSAWAHRGGLLPTDVAATLASPRPQ 126

Query: 123 NSLPRALNEKQALTLV-----------------------------DNVLLHTSHET---- 149
            +LP  L   QA  LV                             D+     +H T    
Sbjct: 127 RTLPTVLRTDQAALLVEAPTRHSTSPTHPTPDDHPVDDHPVDDHADSHRTADAHPTADGH 186

Query: 150 ----------------------KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
                                 + +  R+  +L LLYG G+R+SEA  +   +I   +  
Sbjct: 187 GTAGGPVAAETGDGAGAEEVVAEAVRLRDRVLLELLYGTGVRVSEACGIDVADIDHGRRV 246

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           +R++GKG + R+VP     ++A+ E+     P  +    +  L  G+RG  LNP   ++ 
Sbjct: 247 VRVRGKGGRERVVPYGSPAQRALDEWLRRGRPVLVVPGSRDALLLGVRGGRLNPTTARQI 306

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +    +  GLP     H LRHS ATHLL  G DLR++Q +LGH  L++TQ+YT+V+    
Sbjct: 307 VGAYAQATGLPR-IGPHALRHSAATHLLEGGADLRAVQELLGHSSLASTQVYTHVS---- 361

Query: 307 GDWMMEIYDQTHPSI 321
            D +   Y Q HP  
Sbjct: 362 VDRLRAAYRQAHPRA 376


>gi|297544590|ref|YP_003676892.1| tyrosine recombinase XerD [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842365|gb|ADH60881.1| tyrosine recombinase XerD [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 290

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 74/287 (25%), Positives = 132/287 (45%), Gaps = 19/287 (6%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           TL+SY  D +QFL +L         ++       + I  ++   + +     ++ R++S 
Sbjct: 23  TLESYNRDIKQFLNYLEEIGINYYNVK------KSTILNYLYYLKKKGKSQATVSRNVSS 76

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +K+F  YL  +K   E     +   K     P AL  +Q      ++LL           
Sbjct: 77  LKAFYHYLFMKKKIEEDPTYMINTPKVEKKPPTALTVEQV-----DMLLSIDFGNDEKGL 131

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A++ LLY  GL++SE +SL  +++      + I+   +K R++P+     +A+  Y 
Sbjct: 132 RDKALIELLYATGLKVSEVISLKLEDVNLSYGYVVIRS--NKERVIPIGSHAIEALKNYI 189

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           +        N +  LF  +RG+ L      + IR+    +      T +TLR SFA H+L
Sbjct: 190 EKG--RKAKNGENTLFLNLRGEKLTRQGCWKIIREYTDKINPGFPVTPNTLRQSFAQHML 247

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            NG D+R++Q +LG+     T + TN+ S      + E+Y++ HP  
Sbjct: 248 QNGADIRAVQEMLGYQ----TNLNTNLLSLISKSKIKEVYNKFHPRA 290


>gi|319654625|ref|ZP_08008706.1| hypothetical protein HMPREF1013_05328 [Bacillus sp. 2_A_57_CT2]
 gi|317393691|gb|EFV74448.1| hypothetical protein HMPREF1013_05328 [Bacillus sp. 2_A_57_CT2]
          Length = 328

 Score =  207 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 80/303 (26%), Positives = 137/303 (45%), Gaps = 25/303 (8%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +  +L  + Q +L   ++E GLSK+TL SY  +   F   +          + +  ++  
Sbjct: 47  IHPDLTDKIQLFLSAKKLE-GLSKVTLDSYLLELNTFSKKVK---------KRVEDITTA 96

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           EIR F+      K+   S+ R LS +KSF  +L   +         ++  KK   LP+AL
Sbjct: 97  EIRVFLGSFEHLKLS--SVSRKLSVLKSFFGWLTAEEFLQRDPTTKIKPPKKEKRLPKAL 154

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           + ++   L ++   +             A L +LY  G R+SE  +L    I +  ++ R
Sbjct: 155 SIEELELLRESCKTNRQ----------RAFLEILYATGCRLSEVHALNKSGINNRTASCR 204

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG+K R V   P     + +Y      D      L +      + L+    QR I  
Sbjct: 205 VIGKGNKEREVYFSPKAMYHLRKYLMNRTDDCEA---LMVTERKPYRRLSQRGIQREISI 261

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           + +  GL    + HT+RH+FAT  L+NG D+ ++Q++LGH   +TTQIY  +  +   + 
Sbjct: 262 IAKQAGLDKKISPHTMRHTFATLTLNNGADIAAVQALLGHEDPATTQIYAQLTEEKKRET 321

Query: 310 MME 312
             +
Sbjct: 322 HKK 324


>gi|240103689|ref|YP_002959998.1| xerC/D integrase/recombinase protein (xerC/xerD) [Thermococcus
           gammatolerans EJ3]
 gi|239911243|gb|ACS34134.1| xerC/D integrase/recombinase protein (xerC/xerD) [Thermococcus
           gammatolerans EJ3]
          Length = 283

 Score =  207 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 81/301 (26%), Positives = 139/301 (46%), Gaps = 32/301 (10%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +  E     + +   L++E G S  T++ Y    R++L                  L + 
Sbjct: 1   MKEENSTAIEEFATYLDLE-GKSPNTIRMYTYYVRRYLEHGGG-------------LDFR 46

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
               F+++ R +   +RSL   +  ++++ ++     +  E     ++  +   SLP+AL
Sbjct: 47  SALRFLARLRREGYSNRSLNLVVQALRAYFRF---EGLDEE--AEKLKPPRVPKSLPKAL 101

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            ++    L+  + L           R+  I+ LLYG GLR+SE  +L  ++I  D+  + 
Sbjct: 102 TQEDVRKLLSVIPL--------TRRRDRLIVLLLYGAGLRVSELCNLKKEDIDLDRGIIT 153

Query: 190 IQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           ++G KG K R+VP+ P++ + I  Y      D +    L   R      L+P      + 
Sbjct: 154 VRGGKGAKDRVVPIPPALTEEIKAYLSER--DDDSEYLLVEVRRGTKDRLSPKTVWYLLN 211

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +  +  G+    T H LRHSFATH+L  G D+R+IQ +LGH  LSTTQIYT V  ++   
Sbjct: 212 RYGKKAGV--KVTPHMLRHSFATHMLERGVDIRAIQELLGHSNLSTTQIYTKVTVEHLKK 269

Query: 309 W 309
            
Sbjct: 270 A 270


>gi|320093555|ref|ZP_08025446.1| recombinase XerD [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979482|gb|EFW10953.1| recombinase XerD [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 249

 Score =  207 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 75/242 (30%), Positives = 112/242 (46%), Gaps = 12/242 (4%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S+ R+ + I+    Y  ++          +R  K+ + LP+AL+  Q   L+D       
Sbjct: 1   SVARASAAIRGLHAYALRQGRVGADAAAEVRAPKQGSHLPKALSVDQVSRLLD----AAH 56

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLP 204
                   R++A+L LLY  G R+SEA+ L   +I  D     +R+ GKG K R+VPL  
Sbjct: 57  SAPGAAGLRDAALLELLYATGARVSEAVGLAVDDIDLDDEAPVVRLFGKGRKERLVPLGS 116

Query: 205 SVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
             + A+  Y      +L    +    +F   RG  ++       IR+     GL    + 
Sbjct: 117 YAKDALGAYLVRGRPELAARGRGSHAVFLNKRGAAMSRQSAWETIRRAASAAGLEAGVSP 176

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           HTLRHSFATHLL  G  +R +Q +LGH  + TTQIYT V        + E+Y   HP   
Sbjct: 177 HTLRHSFATHLLEGGASVRDVQELLGHASVQTTQIYTRVT----VAALREVYWTAHPRAR 232

Query: 323 QK 324
            +
Sbjct: 233 GR 234


>gi|326203021|ref|ZP_08192887.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
 gi|325986667|gb|EGD47497.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
          Length = 329

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 87/331 (26%), Positives = 159/331 (48%), Gaps = 29/331 (8%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE---------- 55
           +  I  FE+    +++L  ++  +G S  T+Q Y  D R F  FL  +            
Sbjct: 1   MKNIYDFEMPAVLRDFLNYMQTIKGKSINTIQVYFYDLRIFFRFLKIHRNIVDKNLEFDT 60

Query: 56  ---EKITIQTIRQLSYTEIRAFISKRRTQKIGDRS-LKRSLSGIKSFLKYLKKR-KITTE 110
                I I  ++ ++ +++  ++S    ++        R ++ +KSF  YL  + K+   
Sbjct: 61  IEITDIDIPLLKTVTLSDLYTYMSFVSNKRDNTSHARARKVASLKSFFNYLSTKAKLLDI 120

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
           +  + + + K    LPR LN  ++  L    L   +        R+ AI+ +   CG+R+
Sbjct: 121 NPTIELESPKILKRLPRYLNFDESKKL----LTSVTEANHEYSVRDYAIITIFLNCGIRL 176

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
           SE + +   NI D+  TL + GKG K R +PL  +  +AI +Y  + P +  L  +  LF
Sbjct: 177 SELVGINLYNIKDN--TLTVFGKGGKERSIPLNKACLQAIEDYMKIRPVN-GLKDKSALF 233

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNG-GDLRSIQSILG 288
              R + ++    Q+ +++  +  GL P   + H LRH+ AT +   G  D+R++Q ILG
Sbjct: 234 ISRRNQRISKESVQKIVKRYIKEAGLDPQRYSTHKLRHTAATLMYKYGNVDIRALQEILG 293

Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           H  +STT+IYT+++ +     + E  ++ HP
Sbjct: 294 HESISTTEIYTHLDQQQ----LKEAVNK-HP 319


>gi|182417327|ref|ZP_02948665.1| tyrosine recombinase XerD [Clostridium butyricum 5521]
 gi|237668789|ref|ZP_04528773.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182378835|gb|EDT76354.1| tyrosine recombinase XerD [Clostridium butyricum 5521]
 gi|237657137|gb|EEP54693.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 292

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 77/308 (25%), Positives = 144/308 (46%), Gaps = 16/308 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++    N+   L +E G S+ T+ +Y  D   +L FL     +K+ I     L+   + +
Sbjct: 1   MINSINNYKDYL-LESGKSENTIYAYVTDVTLYLKFL---NRKKVDIYKSDNLT---VAS 53

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +I     Q   +RS+ R +  +++F  YLK + +  E   +  ++ K +  LP+ L  ++
Sbjct: 54  YIQNLLNQGKSERSINRIVISLRNFYSYLKSQSLIQEVPKIEYKSSKNNRKLPQILTIEE 113

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++  V             R++A+L L+Y  G+++SE ++L  +++  + + +R    
Sbjct: 114 VDKIIRIVEKDCPK-----GIRDNALLELMYATGMKVSELINLNVEDVNLELNFVRCTDN 168

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
               RI+P+  S  KA+ EY  +        +   LF  + G  L      R +++  R 
Sbjct: 169 KHYERIIPIGRSACKALSEYLSIRYKIAQCGVSN-LFVNLNGNKLTRQGIWRIVKEYSRK 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+      +T RHSFA HLL NG ++R++Q +LG+  L+    Y  + +    D +  I
Sbjct: 228 AGIDKDVNLNTFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTYYEIIN---NDKINYI 284

Query: 314 YDQTHPSI 321
           Y  THP  
Sbjct: 285 YMHTHPRA 292


>gi|150017415|ref|YP_001309669.1| site-specific tyrosine recombinase XerC [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903880|gb|ABR34713.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 329

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 97/330 (29%), Positives = 155/330 (46%), Gaps = 34/330 (10%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE----- 55
           ++ NNLPE +         ++L  LE  +  S  T+  Y  D   F  F+  Y       
Sbjct: 8   LKNNNLPESLV--------DFLNYLETIKSTSINTIDGYRIDLTIFFRFMMIYKGKVNSD 59

Query: 56  ----EKITIQTIRQ-----LSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKR 105
               E I I  I       +   ++ AF+S   + +     +  R ++ +KSF K+L  +
Sbjct: 60  SVEFEDIDISVIDDEFLRGIKLRDLYAFLSFTEKYRDNSSYARARKVATLKSFFKFLFGK 119

Query: 106 -KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLY 164
            K+ TE+  L + + K +   P  L   Q++ L++++     ++     +R+  IL    
Sbjct: 120 AKVITENPALELESPKINKRHPVYLTLNQSIHLLESL-----NKNDKNYSRDYCILMFFL 174

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL- 223
            CG+R+SE  S+    I DD  TL I GKG+K R V L  +  KA+  Y ++      L 
Sbjct: 175 NCGMRLSELCSIQIDKIRDD--TLTIIGKGNKERTVYLNDACLKALANYLNVRDDSKALP 232

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNG-GDLR 281
           + +  LF   R  P+N    +  I++     GL     T H LRH+ AT +   G  D+R
Sbjct: 233 DNKKFLFLSSRNGPINKRTVEIMIKKHITNAGLTDDKYTPHKLRHTAATLMYKYGNVDIR 292

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           S+QSILGH  +STTQIYT+V+  +  D + 
Sbjct: 293 SLQSILGHTNISTTQIYTHVDDDSLRDAVK 322


>gi|167040254|ref|YP_001663239.1| site-specific tyrosine recombinase XerC [Thermoanaerobacter sp.
           X514]
 gi|300914338|ref|ZP_07131654.1| integrase family protein [Thermoanaerobacter sp. X561]
 gi|307724426|ref|YP_003904177.1| integrase family protein [Thermoanaerobacter sp. X513]
 gi|166854494|gb|ABY92903.1| phage integrase family protein [Thermoanaerobacter sp. X514]
 gi|300889273|gb|EFK84419.1| integrase family protein [Thermoanaerobacter sp. X561]
 gi|307581487|gb|ADN54886.1| integrase family protein [Thermoanaerobacter sp. X513]
          Length = 330

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 79/325 (24%), Positives = 151/325 (46%), Gaps = 32/325 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-------------KITIQTIR 64
            + +L      +  S  T+++Y  D   FL FL     +              + +  I 
Sbjct: 21  LEEFLNYFSTVKARSYNTVKAYAYDLVLFLRFLKQRRRKVSPDVEFDEIDISDVDVDLIE 80

Query: 65  QLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKS 122
            +   ++ A+++    ++     +  R ++ ++SF  YL K+ K+ +++    + + K S
Sbjct: 81  SVDLNDLYAYLNFVANERSNTPHARARKVASLRSFYNYLYKKAKVLSKNPTQELESPKLS 140

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
              P  L   ++  L++++             R+ AI+ L   CGLR+SE +++   +I 
Sbjct: 141 VRQPIYLTLDESKKLLNSI-------DGPFKERDYAIITLFLNCGLRVSELVNINLDDIK 193

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           DD+  L + GKG+K R V L  +   AI  Y  + P +  +  +  LF   R K ++   
Sbjct: 194 DDK--LTVIGKGNKQRTVYLNDACINAINTYLKVRPKE-GVKDKKALFLSKRLKRISVKT 250

Query: 243 FQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTN 300
            Q  +++  +   L     +AH LRH+ AT +   G  D+R++Q +LGH  +STTQIYT+
Sbjct: 251 VQYTVKKHLKNANLEGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTH 310

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKD 325
           V+       + E  ++ +P   ++D
Sbjct: 311 VDDSQ----LKEAVNK-NPLSQKED 330


>gi|182420557|ref|ZP_02643923.2| site-specific recombinase, phage integrase family [Clostridium
           perfringens NCTC 8239]
 gi|182379696|gb|EDT77175.1| site-specific recombinase, phage integrase family [Clostridium
           perfringens NCTC 8239]
          Length = 361

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 84/312 (26%), Positives = 146/312 (46%), Gaps = 27/312 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE----------EKITIQT-----IR 64
            +L  LE  +G S  T++ Y  D   F  FL  Y            E++ I       I+
Sbjct: 49  EFLNYLENVKGKSLNTVKGYSVDLGLFFKFLKVYKGLENNIELEKIEEVEISDLGDNFIK 108

Query: 65  QLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKS 122
            ++ ++I AF++   + +     +  R ++ +KSF K+L  + K+  E+  + + + K +
Sbjct: 109 DITLSDIYAFLAFLEKVRNNSAYARARKVATLKSFFKFLNSKIKLIDENPTVELESPKIN 168

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
              P  L   Q++T+++++      +      R+  IL L   CG+R+SE  ++  + I 
Sbjct: 169 KRHPVYLTLDQSITVLNSM-----DKGNKNYYRDYCILTLFLNCGMRLSELCNIEIEKIK 223

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPG 241
            D  TL I GKG+K R V L  +   AI  Y             +  LF   + +P+N  
Sbjct: 224 GD--TLTIIGKGNKERTVYLNEASIAAIENYLKNRNDSKATEEAKKYLFLSSKYRPINKR 281

Query: 242 VFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYT 299
             +  +++     G      T H LRH+ AT +   G  D+RS+Q+ILGH  +STTQIYT
Sbjct: 282 SVEILVKKHIENAGFKDQKYTPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQIYT 341

Query: 300 NVNSKNGGDWMM 311
           +V+ +   + + 
Sbjct: 342 HVDDETLREAVK 353


>gi|20807810|ref|NP_622981.1| site-specific tyrosine recombinase XerC [Thermoanaerobacter
           tengcongensis MB4]
 gi|34222923|sp|Q8RA66|XERC_THETN RecName: Full=Tyrosine recombinase xerC
 gi|20516368|gb|AAM24585.1| Integrase [Thermoanaerobacter tengcongensis MB4]
          Length = 353

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 79/329 (24%), Positives = 152/329 (46%), Gaps = 35/329 (10%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE---- 56
           ME    P I+        + +L      +  S  T+++Y  D   F  FL     +    
Sbjct: 37  MEALKYPPIL--------EEFLNYFSTVKARSPNTIKAYAYDLILFFRFLKKRRGKVSDD 88

Query: 57  ---------KITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKR- 105
                     + I  I  +   ++ A++S     +     +  R ++ ++SF  YL ++ 
Sbjct: 89  IPFDEIDISDVDIDLIESVDLNDLYAYLSFVTNERSNTPPARARKVASLRSFYNYLYRKA 148

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
           K+ +++    + + K S   P  L  +++  L++++             R+ AI+ L   
Sbjct: 149 KVISKNPTQELESPKLSVRHPIYLTLEESKKLLNSI-------DGPFKERDYAIITLFLN 201

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           CGLR+SE +++   +I +D+  L + GKG+K R + L  +  KAI +Y  + P +  +  
Sbjct: 202 CGLRVSELVNINLDDIKEDK--LTVIGKGNKQRTIYLNEACIKAISDYLKVRPKE-GVKD 258

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLRSI 283
           +  LF   R K ++    Q  +++  ++  L     +AH LRH+ AT +   G  D+R++
Sbjct: 259 KKALFLSKRLKRISVKTVQYLVKKHLKHANLEGKKYSAHKLRHTAATLMYRYGNVDIRTL 318

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           Q +LGH  +STTQIYT+V+     + + +
Sbjct: 319 QKLLGHSNVSTTQIYTHVDDSQLREAVNK 347


>gi|327398928|ref|YP_004339797.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411]
 gi|327181557|gb|AEA33738.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411]
          Length = 279

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 137/297 (46%), Gaps = 29/297 (9%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ++ +    +L +L++ RG S  T+ SY  D      F      +   +            
Sbjct: 2   DIDRLIDRFLFSLKV-RGFSDNTISSYANDLSLVSNFFKDKMLDDNGVGN---------- 50

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F+     +     S  R LS  +SFLK+L K  +     + +++N K S  +PR +  +
Sbjct: 51  -FVLWLSQKNYKPSSFNRKLSSFRSFLKFLTKEGLCNID-VSSIKNKKYSRKVPRYIPFE 108

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               ++++                   + L+Y  GLR+SE ++L   +I+ D   +R++G
Sbjct: 109 TIKKVMEDKKTG-------------LFVELIYSSGLRVSELVNLRVSDIIFDAGFIRVRG 155

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG K R+VP+     K +  Y +    ++ N +    LF    G+P +     + I++  
Sbjct: 156 KGSKERLVPVGNGTLKRLKSYIENARKNIKNSSNNDYLFLSSWGRPFSRQGLWKLIKRSF 215

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +  G+      H LRH FATH++ NG ++R++Q +LGH  ++TTQIYT++  K   D
Sbjct: 216 KKEGID--VHPHMLRHMFATHMIENGANIRAVQEMLGHRSITTTQIYTDITDKAVED 270


>gi|268609330|ref|ZP_06143057.1| site-specific tyrosine recombinase XerC [Ruminococcus flavefaciens
           FD-1]
          Length = 327

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 80/326 (24%), Positives = 155/326 (47%), Gaps = 27/326 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYT 54
           M   N P+  + E L E   +L ++++ + LS+ T+Q Y  D R FL F+         +
Sbjct: 1   MNNYNTPD--NPEFLNE---YLVHIKLVQLLSERTIQGYYEDIRLFLRFIYMNSHNIDDS 55

Query: 55  EEKITI-----QTIRQLSYTEIRAFISKRRTQKIGDRSLK-RSLSGIKSFLKY-LKKRKI 107
            E I I       +R+++ ++I  FI     ++  +   + R +S ++SF KY  K   I
Sbjct: 56  PENIDISDFPEDDLRKITVSDIYNFIFYVSDERHNNDKARYRKISSLRSFFKYLEKAAHI 115

Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
             +    ++       SLP+ L+  +++ L+       S         +  I+ L   CG
Sbjct: 116 IEKDPTKDLDVPVPKKSLPKFLSLNESMRLLQASDNADSKR-------DYCIITLFLNCG 168

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           +R+SE + +   +I   ++ +R+ GKG+K R++ L  +   A+ +Y  +   +     +L
Sbjct: 169 IRLSELVGINISDIDFYENRMRVLGKGNKERMIYLNEACVDALNKYLIIRRDNQKAKAEL 228

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLRSIQS 285
            LF   + K ++    Q+ +       GL     T H LRH+ AT +   G  D+ +++ 
Sbjct: 229 ALFISNQNKRISKRRVQQIVENTLTAAGLDGKGITTHKLRHTAATLMYQYGDADVLTLKE 288

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +LGH  ++TT+IYT+++++N    + 
Sbjct: 289 LLGHASVATTEIYTHLSNENVRSAIE 314


>gi|254479225|ref|ZP_05092570.1| site-specific recombinase, phage integrase family
           [Carboxydibrachium pacificum DSM 12653]
 gi|214034826|gb|EEB75555.1| site-specific recombinase, phage integrase family
           [Carboxydibrachium pacificum DSM 12653]
          Length = 348

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 79/329 (24%), Positives = 152/329 (46%), Gaps = 35/329 (10%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE---- 56
           ME    P I+        + +L      +  S  T+++Y  D   F  FL     +    
Sbjct: 32  MEALKYPPIL--------EEFLNYFSTVKARSPNTIKAYAYDLILFFRFLKKRRGKVSDD 83

Query: 57  ---------KITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKR- 105
                     + I  I  +   ++ A++S     +     +  R ++ ++SF  YL ++ 
Sbjct: 84  IPFDEIDISDVDIDLIESVDLNDLYAYLSFVTNERSNTPPARARKVASLRSFYNYLYRKA 143

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
           K+ +++    + + K S   P  L  +++  L++++             R+ AI+ L   
Sbjct: 144 KVISKNPTQELESPKLSVRHPIYLTLEESKKLLNSI-------DGPFKERDYAIITLFLN 196

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           CGLR+SE +++   +I +D+  L + GKG+K R + L  +  KAI +Y  + P +  +  
Sbjct: 197 CGLRVSELVNINLDDIKEDK--LTVIGKGNKQRTIYLNEACIKAISDYLKVRPKE-GVKD 253

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLRSI 283
           +  LF   R K ++    Q  +++  ++  L     +AH LRH+ AT +   G  D+R++
Sbjct: 254 KKALFLSKRLKRISVKTVQYLVKKHLKHANLEGKKYSAHKLRHTAATLMYRYGNVDIRTL 313

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           Q +LGH  +STTQIYT+V+     + + +
Sbjct: 314 QKLLGHSNVSTTQIYTHVDDSQLREAVNK 342


>gi|148543984|ref|YP_001271354.1| tyrosine recombinase XerD subunit [Lactobacillus reuteri DSM 20016]
 gi|184153379|ref|YP_001841720.1| integrase/recombinase [Lactobacillus reuteri JCM 1112]
 gi|194467806|ref|ZP_03073792.1| integrase family protein [Lactobacillus reuteri 100-23]
 gi|227364897|ref|ZP_03848942.1| tyrosine recombinase [Lactobacillus reuteri MM2-3]
 gi|325682478|ref|ZP_08161995.1| integrase/recombinase XerD [Lactobacillus reuteri MM4-1A]
 gi|148531018|gb|ABQ83017.1| tyrosine recombinase XerD subunit [Lactobacillus reuteri DSM 20016]
 gi|183224723|dbj|BAG25240.1| integrase/recombinase [Lactobacillus reuteri JCM 1112]
 gi|194452659|gb|EDX41557.1| integrase family protein [Lactobacillus reuteri 100-23]
 gi|227070044|gb|EEI08422.1| tyrosine recombinase [Lactobacillus reuteri MM2-3]
 gi|324978317|gb|EGC15267.1| integrase/recombinase XerD [Lactobacillus reuteri MM4-1A]
          Length = 297

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 77/308 (25%), Positives = 138/308 (44%), Gaps = 17/308 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E   +L  L+ ER LS  TL SY+ D  Q + +L     E   I   +Q+ +  +   ++
Sbjct: 4   EVAAFLAFLKDERQLSDNTLMSYQRDLEQTVTYL-----EDRGIVDWQQVDHYLLIDLLN 58

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRALNEKQA 134
             R Q   + ++ R +S ++ F KY+ +    T + +  + +         P  L EK+ 
Sbjct: 59  SLRQQGKANSTINRVISSLRQFYKYMIRHHNLTINPMEMIDHQYTFNQPPAPVILTEKEI 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+          +  I  R+ A+L ++   G+R+SE ++L    +  D   L++ GK 
Sbjct: 119 EQLL-----AVPDVSTPIGLRDRALLEIMDATGMRVSEVIALDLTALHLDVKLLQLTGKN 173

Query: 195 DKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           ++ R++PL     K + +Y D   P  L    +  +F    G PL      + +++    
Sbjct: 174 ERERMIPLSQPAVKWLTDYLDRGRPRLLRDEHETRVFLNAHGYPLTRQGIWKKMKEWVSE 233

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    T  T+R+SFA HL+ NG D++ IQ ILG+  +   Q Y  V+ +     +   
Sbjct: 234 AKIKKEVTPQTMRYSFAVHLIENGADVQLIQEILGYNAMKALQPYLQVSPQQ----LSAN 289

Query: 314 YDQTHPSI 321
           Y + HP  
Sbjct: 290 YMKYHPRA 297


>gi|206895374|ref|YP_002247059.1| tyrosine recombinase XerC [Coprothermobacter proteolyticus DSM
           5265]
 gi|206737991|gb|ACI17069.1| tyrosine recombinase XerC [Coprothermobacter proteolyticus DSM
           5265]
          Length = 286

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 83/300 (27%), Positives = 141/300 (47%), Gaps = 27/300 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  LE   G S+ TL++Y  D +Q+ +F                L    +  ++  
Sbjct: 10  LNQFLNTLEAS-GYSEHTLKAYYVDLKQYFMFT-------------TSLDQKTVDDYLMH 55

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + +   SL R LS ++ F  +LKK+    E  I+ +   K    +PR +       L
Sbjct: 56  LSRKGMAPTSLNRFLSSLRKFCSFLKKQGY--EMPIMELSGFKTGLKVPRVVLRDDISKL 113

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++        E   I+ R+ A+++ L G G RISEALSL  ++I    ++ ++ GKG+K 
Sbjct: 114 LELP------ENTPIELRDKALVWFLLGTGTRISEALSLKVEDIDFRTASCQVLGKGNKK 167

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R V +     K +  Y ++         + PLF  ++G+ L     +  + ++ +  GL 
Sbjct: 168 RTVYIPSKALKLLKRYIEVFNL-----TEGPLFLNMQGQGLTDRGARYILHKISKKYGLR 222

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                HTLRH+FAT+LL  G +LR IQ +LGH  L +TQIYT+V+     + +  +  + 
Sbjct: 223 DLVHPHTLRHTFATNLLEEGANLREIQELLGHSSLRSTQIYTHVSPVMVKEAIEAMRKEA 282


>gi|288573040|ref|ZP_06391397.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288568781|gb|EFC90338.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 263

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 83/277 (29%), Positives = 139/277 (50%), Gaps = 20/277 (7%)

Query: 45  QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK 104
           QF  FL     E   +  +  ++  EIRAF+           S+ R LS IKS +KYL +
Sbjct: 3   QFAEFL-----ETQGVSDVSDIATGEIRAFVRSLSGYGFAPASVGRKLSAIKSLMKYLFE 57

Query: 105 RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLY 164
            ++  +     +R  ++S+ LPRA++ +Q   ++D      +++      RN A++ LLY
Sbjct: 58  ERVIEKDPSGRVRGPRRSDRLPRAMSVEQVSRMIDC-----AYDDDEQGLRNGALIELLY 112

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
           GCGLR++E +S+  +++  ++  L++ GKG K R VP     ++A+          L++ 
Sbjct: 113 GCGLRVAEVVSVRWEDVEIEERWLKVMGKGSKERAVPFGSMAQRAL-----TGLRALSMP 167

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
               +F G +   L      R +       G+    T H+LRHSFATHLL  G  LR +Q
Sbjct: 168 GDEYVFPGKKRGCLTVRTVHRVVVAAAAKAGVN-GVTPHSLRHSFATHLLEGGASLRVVQ 226

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            +LGH  L+TTQ Y  + +++    + + Y+  HP  
Sbjct: 227 ELLGHEHLTTTQRYLRITAQH----LKKSYESAHPRA 259


>gi|325679322|ref|ZP_08158907.1| phage integrase, N-terminal SAM-like domain protein [Ruminococcus
           albus 8]
 gi|324108919|gb|EGC03150.1| phage integrase, N-terminal SAM-like domain protein [Ruminococcus
           albus 8]
          Length = 336

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 76/327 (23%), Positives = 137/327 (41%), Gaps = 32/327 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE--------------KITIQTIRQ 65
           ++L  + + +G S  T+++Y  D R FL +L     +              ++    I++
Sbjct: 15  DYLTYMRLVKGRSDRTVEAYYIDLRTFLRYLLINHNDADPNKVEFEDIAISEVPFDYIKK 74

Query: 66  LSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSN 123
           +   +   ++     +     ++  R  S +K F  Y   K+ + +   I  +   K   
Sbjct: 75  IRLIDAYNYLKWLADERGNSIKTRARKTSALKQFYSYLHLKKGLISSDPIEQLELPKLPK 134

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           +LP+ L    A  L+       +        R+  ++ L   CG+R+SE   L   +I  
Sbjct: 135 TLPKYLTLGDAQKLL-------AAVESANYERDYCMITLFLNCGMRLSELCGLNTDDISF 187

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           +  T+R+ GKG K RIV +  +  +A+  Y               LF   R   ++  + 
Sbjct: 188 ENGTMRLFGKGSKERIVYMNDACVEALKAYLPRR--SAVQTTDKALFLSNRNTRISRRMT 245

Query: 244 QRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTNV 301
           Q  + +  +  GL  L  T H LRH+ AT +   G  D   ++ ILGH  L+TT+IYT++
Sbjct: 246 QYIVEESLKKAGLGNLGITTHKLRHTAATLMYQYGNVDTLVLKDILGHESLATTEIYTHL 305

Query: 302 NSKNGGDWMMEIYDQTHPSITQKDKKN 328
            S+N  D         +P   Q  +K+
Sbjct: 306 TSQNLRDA-----ANANPLADQHIRKH 327


>gi|168205361|ref|ZP_02631366.1| tyrosine recombinase [Clostridium perfringens E str. JGS1987]
 gi|170663182|gb|EDT15865.1| tyrosine recombinase [Clostridium perfringens E str. JGS1987]
          Length = 431

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 80/308 (25%), Positives = 138/308 (44%), Gaps = 23/308 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE------------EKITIQTIRQLS 67
            +L  L+  +G S  T++ Y+ +      +L    E              +    I+ ++
Sbjct: 124 EFLNYLKNIKGRSPNTVKGYKSNLNLLFKYLVSLKENTPGTDIENVCIRNVDDTFIKNIT 183

Query: 68  YTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKSNSL 125
             ++  F+S     +K G  S  R ++ IKSF  +L  + KI  E+  L +   K    L
Sbjct: 184 LMDLYNFLSYVDEVRKNGSYSRARLVAAIKSFFLFLNSKLKIIDENIALELEFPKIEKRL 243

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P  L   QA  +++++      +TK    R+  I  L   CG+R+SE   +   +I  D 
Sbjct: 244 PVYLTLDQAKAVLNSM-----DKTKRYYYRDYCIFTLFLNCGMRLSELCGIKISDIRGD- 297

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             L I GKG+K R + L     K+I +Y ++            LF     K ++    ++
Sbjct: 298 -LLTIIGKGNKQRTIYLNSECLKSIHDYLNVRGRGNTPEEDKYLFLSRIDKRISNRGVEK 356

Query: 246 YIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTNVNS 303
            +++     G      T H LRHS AT L   G  D+RS+Q+ILGH  ++TT++YT+V+ 
Sbjct: 357 LVKKHIENAGFTDKKYTPHKLRHSAATILYKYGNADIRSLQAILGHESIATTELYTHVDD 416

Query: 304 KNGGDWMM 311
           +   + + 
Sbjct: 417 ETLRNVIK 424


>gi|300741219|ref|ZP_07071240.1| tyrosine recombinase XerD [Rothia dentocariosa M567]
 gi|300380404|gb|EFJ76966.1| tyrosine recombinase XerD [Rothia dentocariosa M567]
          Length = 320

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 71/257 (27%), Positives = 117/257 (45%), Gaps = 24/257 (9%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +G  S+ R+++ ++    +    +I        ++  K    LP+A++ +Q   L+    
Sbjct: 72  LGPNSIARTMAAVRGAHSFWHASRILETDPAAAVKPPKNVKRLPKAVSVEQMQKLLAIPS 131

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-------------STLR 189
           L T         RN AIL  LY  G R+SE L+    +I   +               +R
Sbjct: 132 LKTP-----TGLRNRAILEFLYATGARVSEMLATDLDDIHLGEKPRDENGEFIAVPGYVR 186

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           + GKG K R+VPL    ++A+ +Y       F  +      LF   RG  L        +
Sbjct: 187 LFGKGGKERLVPLGSYAQRALEDYIVRARPKFASHGKGTAALFLNGRGSRLGRQGAWLIL 246

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++     GL    + H++RHSFATHL+  G D+R +Q +LGH  ++TTQ+YT V  +   
Sbjct: 247 KETAEEAGLSSDFSPHSIRHSFATHLVQGGADIRVVQELLGHASIATTQVYTKVTPE--- 303

Query: 308 DWMMEIYDQTHPSITQK 324
             M+E+Y   HP   ++
Sbjct: 304 -GMLEVYRMAHPRAHER 319


>gi|57640712|ref|YP_183190.1| integrase/recombinase [Thermococcus kodakarensis KOD1]
 gi|73920475|sp|Q5JHA3|XERCL_PYRKO RecName: Full=Probable tyrosine recombinase xerC-like
 gi|57159036|dbj|BAD84966.1| integrase/recombinase [Thermococcus kodakarensis KOD1]
          Length = 282

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 133/295 (45%), Gaps = 32/295 (10%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + +   L++E G S  T++ Y    R++L +                L+      F+
Sbjct: 6   EVIEEFETYLDLE-GKSPHTIRMYTYYVRRYLEWGG-------------DLNAHSALRFL 51

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +  R     +RSL   +  ++++ ++     +  +     ++  K   SLP+AL  ++  
Sbjct: 52  AHLRKNGYSNRSLNLVVQALRAYFRF---EGL--DDEAERLKPPKVPRSLPKALTREEVK 106

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KG 194
            L+  +             R+  I+ LLYG GLR+SE  +L   ++  D+  + ++G KG
Sbjct: 107 RLLSVI--------PPTRKRDRLIVLLLYGAGLRVSELCNLKKDDVDLDRGLIVVRGGKG 158

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K R+VP+   +   I  Y +    +      L   R  R   L+       +++  +  
Sbjct: 159 AKDRVVPIPKYLADEIRAYLESRSDE--SEYLLVEDRRRRKDKLSTRNVWYLLKRYGQKA 216

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           G+    T H LRHSFATHLL  G D+R+IQ +LGH  LSTTQIYT V  ++    
Sbjct: 217 GVE--VTPHKLRHSFATHLLEEGVDIRAIQELLGHSNLSTTQIYTKVTVEHLRKA 269


>gi|212224162|ref|YP_002307398.1| integrase/recombinase [Thermococcus onnurineus NA1]
 gi|254799323|sp|B6YWN8|XERCL_THEON RecName: Full=Probable tyrosine recombinase xerC-like
 gi|212009119|gb|ACJ16501.1| integrase/recombinase [Thermococcus onnurineus NA1]
          Length = 282

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 82/298 (27%), Positives = 138/298 (46%), Gaps = 35/298 (11%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E+++E + +L    +E G S  T++ Y    R++L                 +L      
Sbjct: 6   EVIEEYETYLD---LE-GKSPNTIRMYSYYVRRYLEGGG-------------ELKARSAL 48

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F++K R +   ++SL   +  ++S+ ++        E     +R  K   SLP++L  +
Sbjct: 49  RFLAKLRREGYSNKSLNLVVQALRSYFRF---EGYDEE--AEKLRPPKVPKSLPKSLTRE 103

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   ++  +             R+  I  LLYG GLR+SE  +L   ++  ++S + ++G
Sbjct: 104 EVRKILSVI--------PPTKKRDRLIFLLLYGAGLRVSELCNLKKSDVDFERSLIIVRG 155

Query: 193 -KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            KG K R+VP+   + + I  Y +    D    I     R  R   L+P      +++  
Sbjct: 156 GKGAKDRVVPIPAFLLEGIKAYLETRDDDSEYLIVED--RRERKDKLSPKTVWYLLKKYG 213

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
              G+    T H LRHSFATH+L NG D+R+IQ +LGH  LSTTQIYT V  ++    
Sbjct: 214 DRAGI--RVTPHMLRHSFATHMLENGVDIRAIQELLGHSNLSTTQIYTKVTVEHLRKA 269


>gi|189219748|ref|YP_001940389.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4]
 gi|189186606|gb|ACD83791.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4]
          Length = 280

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 93/296 (31%), Positives = 141/296 (47%), Gaps = 26/296 (8%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           +++Y    ++F  F+ +   ++  I+  R     +   F+ KR    +   S++   + +
Sbjct: 1   MRNYVQPLKEFFSFVKWQQCKEPKIEECR-----DYLYFLCKRPD--LKPSSIRVRFAAL 53

Query: 96  KSFLKYLKKRKIT-TESNILNMRNLKKSNSLPRALNEKQALTLVDNV---------LLHT 145
           +SF  +  + K    ES    +   K   +LPR L+ +Q   L++               
Sbjct: 54  RSFFNFFYREKKINKESPFSQVMLPKPDRNLPRYLSLEQVQALLNAPQKKWEKEKEKGKK 113

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           S   +W   R+ A L  LYG GLR+ E  SL  +N       L ++GK  K R   L   
Sbjct: 114 SRWNEWQWKRDQAWLETLYGAGLRVGELSSLKRKNFFPSDLALLVEGKRKKERYCILGEV 173

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              ++  Y + CPF+        LF   RGKPL P  FQ  +++     GL  S + H L
Sbjct: 174 ATASLCSYLESCPFE-----SEFLFVSSRGKPLTPRFFQLSLKEYLAIAGLDQSISPHKL 228

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           RH+FATHLL  G DLRSIQ +LGH  LSTTQIYT V++++    + E Y +THP  
Sbjct: 229 RHTFATHLLEGGADLRSIQELLGHAHLSTTQIYTAVSAEH----LKESYFRTHPRA 280


>gi|88855245|ref|ZP_01129910.1| tyrosine recombinase [marine actinobacterium PHSC20C1]
 gi|88815773|gb|EAR25630.1| tyrosine recombinase [marine actinobacterium PHSC20C1]
          Length = 302

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 90/311 (28%), Positives = 139/311 (44%), Gaps = 12/311 (3%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L +    +   L  +RG S  T++SY  D    + F             +  L      
Sbjct: 2   DLHRLVDEFAAYLAADRGFSVHTVRSYRSDLTNLVGFAVERRAIAADDLDLELLRDWLWH 61

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           A         +   +L R  +  ++F  +L++   ++      ++  K    LPR LN  
Sbjct: 62  A-----SQAGLAKSTLARRAAASRAFSAWLEQTHQSSTDAAARLKAPKAERHLPRVLNRD 116

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q   ++ +V    S     +  R+ AI+ LLY   LR+SE   L+  +I D + T+R+ G
Sbjct: 117 QMADMLQSVATRAS-TADPVALRDQAIVELLYASALRVSELAGLSLSDIDDSRLTVRVLG 175

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           KG K R+VP       AI +Y D     L    +   PLF G RGK ++       I  L
Sbjct: 176 KGAKERVVPFGIPAHHAISDYLDRGRPQLIEETDGSAPLFVGARGKRVSTRTVYEVIAHL 235

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              +     +  HTLRH+ ATHLL  G DLR++Q +LGH  L TTQ+YT+V+++     +
Sbjct: 236 LAEVPGSGGSGPHTLRHTAATHLLDGGADLRAVQEMLGHASLGTTQLYTHVSTER----L 291

Query: 311 MEIYDQTHPSI 321
            E Y   HP  
Sbjct: 292 RESYRTAHPRA 302


>gi|168185133|ref|ZP_02619797.1| tyrosine recombinase [Clostridium botulinum Bf]
 gi|182671818|gb|EDT83779.1| tyrosine recombinase [Clostridium botulinum Bf]
          Length = 327

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 90/321 (28%), Positives = 146/321 (45%), Gaps = 24/321 (7%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE------------- 55
            ++ +L      +L  ++  +  S  T++ Y+ D   F  FL                  
Sbjct: 2   AINLDLPPILIAYLSYMDTIQNKSSNTIEGYKLDLILFFRFLKLSKNNLPLNTDIKDVCI 61

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIG-DRSLKRSLSGIKSFLKYLKKR-KITTESNI 113
           + I    ++ +S  +I  F+   +  +     +  R ++ +KSF  YLK + KI   +  
Sbjct: 62  KDIDENFLKSISLIDIYNFLDYIKNYRDNCSNTRARKVAVLKSFFNYLKNKVKIIELNPT 121

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
            N+   K+    P  L+ K++  L+D V +      +     + AI+ L   CGLR+SE 
Sbjct: 122 KNLETPKRPKRQPVYLSLKESEMLLDAVKIKNGRNKER----DYAIITLFLNCGLRLSEL 177

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFR 231
            ++    I +D  TL I GKGDK R + L  S  KAI EY ++     N+  +    LF 
Sbjct: 178 CNIKLSYIRND--TLIITGKGDKQRTIYLNNSCLKAINEYLNVRNKLKNIKDKDSDYLFL 235

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHF 290
             R + +N    QR +++   Y GL    T H LRH+ AT L   G  D+R++Q ILGH 
Sbjct: 236 SERKQKINKRSVQRIVQKFIEYAGLDKKYTVHKLRHTAATLLYKYGEVDIRNLQVILGHE 295

Query: 291 RLSTTQIYTNVNSKNGGDWMM 311
            +STT IYT+V+       + 
Sbjct: 296 NISTTTIYTHVDKDELRSALK 316


>gi|150016835|ref|YP_001309089.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149903300|gb|ABR34133.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 292

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 74/308 (24%), Positives = 138/308 (44%), Gaps = 16/308 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++    N+   L  E G S+ T+ +Y  D   +L FL            + +   + + +
Sbjct: 1   MINSINNYKNYL-FESGKSENTIYAYVTDVSLYLKFLNRKKI------DLYESDKSTVMS 53

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +I     Q   +RS+ R +  +++F  YLK   +  E   +  ++ K +  LP+ L  ++
Sbjct: 54  YIQNLTNQGKSERSINRIVISLRNFYSYLKSETLIKEVPKIEYKSSKNNRKLPQILTIEE 113

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++  V    S        R++A+L L+Y  G+++SE + L   ++  D + ++    
Sbjct: 114 VDKIIRIVEKDCSK-----GIRDNALLELMYATGMKVSELIGLNVDDVNLDLNFVKCTDN 168

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
               R++P+  S  KA+ EY  +        +   LF  + G  L      R +++  R 
Sbjct: 169 KHYERLIPIGRSACKALTEYLSIRYKIAQCGVSN-LFVNLNGNKLTRQGIWRIVKEYSRK 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+      +T RHSFA HLL NG ++R++Q +LG+  L+    Y  + +    D +  I
Sbjct: 228 AGIDKDVNLNTFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTYYEIIN---NDKINYI 284

Query: 314 YDQTHPSI 321
           Y  THP  
Sbjct: 285 YMHTHPRA 292


>gi|322420470|ref|YP_004199693.1| integrase family protein [Geobacter sp. M18]
 gi|320126857|gb|ADW14417.1| integrase family protein [Geobacter sp. M18]
          Length = 304

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 67/308 (21%), Positives = 123/308 (39%), Gaps = 13/308 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE----EKITIQTIRQ 65
              +L    + +   L  E G S  T+ +Y  D                  ++T+  + Q
Sbjct: 6   ADLDLTGAAEAFCARLSAE-GRSPATIAAYRRDLALVARVAGELAPGVVCREVTVGFLDQ 64

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +   E    +++ +       SL R  + +++F  +  +  +  ++   ++R  +    L
Sbjct: 65  VFSAEA---VTESKRGPRSAASLHRMKAAVRAFFAWASEAGVVDDNPARSIRMHRLPRKL 121

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P  L   +   L    L      T +   R+ A++ +L G G+R+ E  +L   +I  D 
Sbjct: 122 PVFLTTAEKKRL----LKELKGRTDFSTLRDRAMIEVLLGTGIRLGELAALNLDDIDLDA 177

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             LR++ KG+  ++  +   +R  +  Y           ++  LF   R   L       
Sbjct: 178 KHLRVRAKGNVPQVKFIKTDLRTLLRRYLAERRRHSRPEME-ALFLSNRDGRLCQRQIAN 236

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +    R  G+    T H LRH+FATHL     DL  +Q  LGH  +STTQIYT++    
Sbjct: 237 RLAHWLRKAGIEKELTPHGLRHTFATHLYCATNDLLVVQRALGHRDVSTTQIYTHLVDGQ 296

Query: 306 GGDWMMEI 313
             + +  +
Sbjct: 297 LEEALERL 304


>gi|94495775|ref|ZP_01302355.1| integrase [Sphingomonas sp. SKA58]
 gi|94425163|gb|EAT10184.1| integrase [Sphingomonas sp. SKA58]
          Length = 310

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 86/309 (27%), Positives = 146/309 (47%), Gaps = 28/309 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-KITIQTIRQLSYTEIRAFIS 76
              +L+ +  ERG S+ TL +Y  D       L       K  + T+             
Sbjct: 9   IDRFLEMMAAERGASRNTLLAYRTDLTGAGGLLGGLAGASKEGLGTLAT----------- 57

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                 +   S+ R  S +++F  +L++  +  ++  + +        LP+ L+  +   
Sbjct: 58  --HWASLAGSSVARKASALRAFYGFLEEEGLRADNPSVALPRPVTRRPLPKILSTTEVDR 115

Query: 137 L--VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           L  +    L  +H    +D R SA++ LLYG GLR +E +SL  + +  D+  L ++GKG
Sbjct: 116 LFALIAERLEVAHPA-PLDLRLSALIELLYGSGLRATELVSLPRRALAADRPFLILKGKG 174

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            + R+VP+    R A+  +    P D        LF   +   L+     + ++ L    
Sbjct: 175 ARERLVPISDRARAAVSAWLVHVPGD-----SAWLFPSGKS-HLSRIRLYQLVKALAGAA 228

Query: 255 GL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           G+ P   + H LRH+FATHLL  G DLR++Q++LGH  + TTQIYT+V+S+     ++E+
Sbjct: 229 GIAPERVSPHVLRHAFATHLLEGGADLRALQAMLGHADIGTTQIYTHVDSRR----LVEL 284

Query: 314 YDQTHPSIT 322
            +Q HP  T
Sbjct: 285 VNQRHPLAT 293


>gi|255020691|ref|ZP_05292753.1| Tyrosine recombinase xerC [Acidithiobacillus caldus ATCC 51756]
 gi|254969927|gb|EET27427.1| Tyrosine recombinase xerC [Acidithiobacillus caldus ATCC 51756]
          Length = 317

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 82/300 (27%), Positives = 138/300 (46%), Gaps = 18/300 (6%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
               +  +Y  D   +  FLA     +  I  I  +    +R FI + R + +  RSL+R
Sbjct: 18  YRPASASAYRADLHLWQEFLA-----EQGIDHIESVQAEHLRHFIRRERARGVAIRSLRR 72

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH------ 144
             + +++  ++L+++          +R  K     P  L   QA  L+D           
Sbjct: 73  RFAALRALYRHLQRQHPQLPDPSRYLRLPKLEQHFPDWLTVDQAQQLLDGPTSSDGGPAQ 132

Query: 145 -TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
             + +T +   R+ A++ LLY   LR+SE +++   ++    S LR+ GKG K R+VP+ 
Sbjct: 133 PATAQTHFAMTRDRAMMELLYSSALRVSELVAIDLDHLDLAGSWLRVFGKGGKERMVPVG 192

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
                A+  Y           ++  LF   RG  L+    QR +    R   L  +   H
Sbjct: 193 QVALTALRTYLPARAAVAAAEVKA-LFLNQRGGRLSVRSVQRIVDGWGRD-RLGQALHPH 250

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
           TLRHS A+HLL + GDLR++Q  LGH  ++TT IYT+++ ++    +  +YD  HP   +
Sbjct: 251 TLRHSAASHLLQSSGDLRAVQDFLGHAGIATTAIYTHLDHQH----LAAVYDSAHPRAHR 306


>gi|110799420|ref|YP_695812.1| site-specific tyrosine recombinase XerC [Clostridium perfringens
           ATCC 13124]
 gi|110674067|gb|ABG83054.1| site-specific recombinase, phage integrase family [Clostridium
           perfringens ATCC 13124]
          Length = 450

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 84/312 (26%), Positives = 146/312 (46%), Gaps = 27/312 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE----------EKITIQT-----IR 64
            +L  LE  +G S  T++ Y  D   F  FL  Y            E++ I       I+
Sbjct: 138 EFLNYLENVKGKSVNTIKGYSVDLGLFFKFLKVYKGLENNIELEKIEEVEISDLGDNFIK 197

Query: 65  QLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKS 122
            ++ ++I AF++   + +     +  R ++ +KSF K+L  + K+  E+  + + + K +
Sbjct: 198 DITLSDIYAFLAFLEKVRNNSAYARARKVATLKSFFKFLNSKIKLIDENPTVELESPKIN 257

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
              P  L   Q++T+++++      +      R+  IL L   CG+R+SE  ++  + I 
Sbjct: 258 KRHPVYLTLDQSITVLNSM-----DKENKNYYRDYCILTLFLNCGMRLSELCNIEIEKIK 312

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPG 241
            D  TL I GKG+K R V L  +   AI  Y             +  LF   + +P+N  
Sbjct: 313 GD--TLTIIGKGNKERTVYLNEASIAAIENYLKNRNDSKATEEAKKYLFLSSKYRPINKR 370

Query: 242 VFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYT 299
             +  +++     G      T H LRH+ AT +   G  D+RS+Q+ILGH  +STTQIYT
Sbjct: 371 SVEILVKKHIENAGFKDQKYTPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQIYT 430

Query: 300 NVNSKNGGDWMM 311
           +V+ +   + + 
Sbjct: 431 HVDDETLREAVK 442


>gi|282879915|ref|ZP_06288640.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1]
 gi|281306217|gb|EFA98252.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1]
          Length = 292

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 65/304 (21%), Positives = 129/304 (42%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L  E+  S LT+++Y  D   F  F      +     +   +    IR ++  
Sbjct: 2   IKEFLDYLRFEKNRSALTVKNYGKDLMAFEEFFRLLEPQ----LSWESIDSNIIRDWMES 57

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     S+ R LS ++SF ++   R +  +   + +   KK   LP+ + E +   L
Sbjct: 58  MMDRGNNATSINRRLSALRSFYRFALTRGLVDKDPTITIVGPKKKKPLPQFVKESEMDAL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +   L       ++ D     ++   Y  G+R++E + L   +I     +L++ GK +K 
Sbjct: 118 LAFKL----EVNQYKDVLAHTLVETFYCTGMRLAELIGLDEASIDFAHQSLKVLGKRNKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R +P    +++++  Y  +    +        F    G+ L     +  + +    +   
Sbjct: 174 RYIPFGAELKESLQYYISIRDQQVQ-RQSTAFFVDKDGQRLTHNQVRYAVNKCLSTVTTL 232

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T H LRH+FAT ++++G  L S+Q +LGH  L+T    T V +    + +  +Y + 
Sbjct: 233 KKRTPHVLRHTFATAMMNHGAGLESVQQLLGHQSLTT----TEVYTHTTFEQLKRVYMKA 288

Query: 318 HPSI 321
           HP  
Sbjct: 289 HPRA 292


>gi|294677399|ref|YP_003578014.1| tyrosine recombinase XerD [Rhodobacter capsulatus SB 1003]
 gi|294476219|gb|ADE85607.1| tyrosine recombinase XerD [Rhodobacter capsulatus SB 1003]
          Length = 318

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 131/305 (42%), Gaps = 22/305 (7%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS- 91
           + T+ +Y  D   FL F      + IT      L    +  ++ +   + +   +  R+ 
Sbjct: 25  RNTIAAYGRDLSDFLDFTTAKGLDLIT------LDRAAVEDWLVRLEAEGLAKATRARAA 78

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L G          R     +  L +    K+  LP+ L+ ++   L++          + 
Sbjct: 79  LGGEAILPASPMTRAGGRTTPTLQISGPGKAQRLPKTLSIEEVEALLEAGRDQGRSPAEQ 138

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           I  RN  ++ LLY  G+R+SE + L       + + L ++GKGDK R+VPL    R+A+ 
Sbjct: 139 I--RNRCLMELLYATGMRVSELVGLPVAAARGNPAMLMVRGKGDKERMVPLSAPAREALA 196

Query: 212 EYYDLCPFDLN-------LNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLGL-PLSTTA 262
            +                L     LF    +   L    F   ++ +    GL P   T 
Sbjct: 197 AWLATRDAAEEAARIARRLPPSRFLFPSSGKEGHLTRQGFHALLKDIALAAGLDPARVTP 256

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           H LRH+FATHLL  G DLR IQ++LGH  LSTT+IYT+V  +     + ++    HP   
Sbjct: 257 HVLRHAFATHLLQGGADLRVIQTLLGHADLSTTEIYTHVLEER----LKDLVLGHHPLAR 312

Query: 323 QKDKK 327
           + D +
Sbjct: 313 RADPQ 317


>gi|269127047|ref|YP_003300417.1| integrase family protein [Thermomonospora curvata DSM 43183]
 gi|268312005|gb|ACY98379.1| integrase family protein [Thermomonospora curvata DSM 43183]
          Length = 314

 Score =  205 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 78/326 (23%), Positives = 137/326 (42%), Gaps = 24/326 (7%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
                L      +L +L  +RGL+  TL SY  D R++   L            I +++ 
Sbjct: 2   AAESALETAVSRYLAHLAADRGLAANTLSSYRRDLRRYAQALRERGR-----CAIGEVTE 56

Query: 69  TEIRAFISKRRT-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
            ++  +++  R      + + DRS  R+++ ++   ++  +  +        +R      
Sbjct: 57  ADVLGYLAGLREGDAAHRPLSDRSAARAVAAVRGLHRFAVREGLAAADPAAGVRPPASPK 116

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
             P+A++  +   L    L   + E      R+ A+L LLYG G RISEA++L   ++  
Sbjct: 117 RRPKAISVAEVERL----LAAAASEGTPRGLRDRALLELLYGSGARISEAVALDVDDLDL 172

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN--IQLPLFRGIRGKPLNPG 241
               +R+ GKG ++R VP+    R+A+  Y       L  +      LF   RG  L+  
Sbjct: 173 KAGLIRLTGKGGRVRRVPVGEHARRAVEAYLRQARPHLAKDGTAGAALFLNARGGRLSRQ 232

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST---TQIY 298
                +R   +   L +  + HTLRHSFATHLL  G D   +  +LG+         ++Y
Sbjct: 233 GAWMVLRAAAQRARL-VGVSPHTLRHSFATHLLDGGADAGVVHQLLGNVSAEQGRGGRMY 291

Query: 299 TNVNSKNGGDWMMEIYDQTHPSITQK 324
             V        + E++   HP    +
Sbjct: 292 ALVTQ----GLLTEVHAMAHPRARAE 313


>gi|217076522|ref|YP_002334238.1| site-specific recombinase XerD [Thermosipho africanus TCF52B]
 gi|259710439|sp|B7IFN3|XERC_THEAB RecName: Full=Tyrosine recombinase xerC
 gi|217036375|gb|ACJ74897.1| site-specific recombinase XerD [Thermosipho africanus TCF52B]
          Length = 283

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 79/306 (25%), Positives = 143/306 (46%), Gaps = 29/306 (9%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + K  + +   L   R  S+ TL++Y+ D R+FL ++          + I  +   ++  
Sbjct: 1   MDKVIEMFSDYLAHVRRHSENTLKAYKKDVRKFLTYVG---------KQINNIERKDVEE 51

Query: 74  FISKRRTQKI---GDR--SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           F+       I     R  ++ R +S + SF  YL+   +  E+ +  +++ +    +P  
Sbjct: 52  FLKALSKGDITGESPRETTISRYISSLNSFFNYLELSGMIYENPMERIKHPRIRRKIPDF 111

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L E +  +L+           +  + R    + LLY  GLRISE  +L   +I      L
Sbjct: 112 LTEDEVSSLIGAF-------NEENELRQKTAISLLYYAGLRISELCNLRTTDISFIPPFL 164

Query: 189 RI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           R+  GKG K R+VPL   V   + +Y DL       N ++ +F   +   ++P    R++
Sbjct: 165 RVEMGKGRKDRLVPLPDKVIPILKKYIDL------ENPKIFVFENGKK-HVHPSTVFRWL 217

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++  +   +      HTLRHS+ATHL+  G +++ +Q +LGH  LSTT IY +V  +   
Sbjct: 218 KEGVKRANIKKDVHPHTLRHSYATHLIRKGVNIKVVQELLGHTNLSTTSIYLHVADQEKF 277

Query: 308 DWMMEI 313
           D + ++
Sbjct: 278 DAVKKL 283


>gi|167625815|ref|YP_001676109.1| tyrosine recombinase XerC [Shewanella halifaxensis HAW-EB4]
 gi|167355837|gb|ABZ78450.1| tyrosine recombinase XerC [Shewanella halifaxensis HAW-EB4]
          Length = 303

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 76/305 (24%), Positives = 149/305 (48%), Gaps = 19/305 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++ + L  ER +S  T+++Y  + ++     +         ++     +  ++A ++K  
Sbjct: 15  SFERYLRTERQVSAYTVRNYLFELKRVEKLFSET-------ESWLSQQHDSLQAILAKLH 67

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +  RSL  +LS +K F ++L + +    +  +++   K+   LP+ ++      L+D
Sbjct: 68  RKGLSPRSLSLTLSSLKQFYEFLLREQQLKINPAISLTAPKQGKPLPKNMDVDSVSHLLD 127

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                       +  R+ AI+ L Y  GLR+ E  +L   +I   ++ +++ GKG K RI
Sbjct: 128 I------DANDPLSFRDKAIMELFYSSGLRLGELAALNAADIQFSEAQVKVLGKGSKERI 181

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VP+      AI ++ ++            LF   +GK L     Q  + +  +   + + 
Sbjct: 182 VPIGKLALAAITQWLEIKRDIACEG--DALFVTAKGKRLAHRSIQARLAKWGQEQAIGMK 239

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRHSFATH+L +  DLR++Q +LGH  LSTTQ+YT+++ ++    + ++YD  HP
Sbjct: 240 VHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQVYTSLDFQH----LAKVYDGAHP 295

Query: 320 SITQK 324
              ++
Sbjct: 296 RARKR 300


>gi|157960209|ref|YP_001500243.1| tyrosine recombinase XerC [Shewanella pealeana ATCC 700345]
 gi|157845209|gb|ABV85708.1| tyrosine recombinase XerC [Shewanella pealeana ATCC 700345]
          Length = 304

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 79/308 (25%), Positives = 150/308 (48%), Gaps = 19/308 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++ + L  ER +S  T+++Y  + ++     +          +   L +  ++A ++K  
Sbjct: 15  DFERYLRTERQVSAYTVRNYLFELKRVEKLFSET-------DSWLSLQHESLQAMLAKLH 67

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +  RSL  +LS +K F ++L + +    +  +++   K+   LP+ ++         
Sbjct: 68  RKGLSPRSLSLTLSSLKQFYEFLLREQQIKVNPAISLTAPKQGKPLPKNMDVDSVSH--- 124

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              L        +  R+ AI+ L Y  GLR++E  +L   +I   Q+ +++ GKG K RI
Sbjct: 125 ---LLDLDGDDPLSLRDKAIMELFYSSGLRLAELAALNVGDIQFSQAQVKVLGKGSKERI 181

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VP+      AI ++ D+       +    LF   +GK L     Q  + +  +   + + 
Sbjct: 182 VPIGKLALTAINQWLDIKRDIACED--DALFVTAKGKRLAHRSIQARLAKWGQEQAIGIK 239

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRHSFATH+L +  DLR++Q +LGH  LSTTQ+YT+++ ++    + ++YD  HP
Sbjct: 240 VHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQVYTSLDFQH----LAKVYDNAHP 295

Query: 320 SITQKDKK 327
              ++  K
Sbjct: 296 RAKKRGDK 303


>gi|224372664|ref|YP_002607036.1| phage integrase [Nautilia profundicola AmH]
 gi|223589882|gb|ACM93618.1| phage integrase [Nautilia profundicola AmH]
          Length = 275

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 90/307 (29%), Positives = 150/307 (48%), Gaps = 39/307 (12%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +  + +L+ L+I +G+SK T ++Y+ D  QF  ++          + I +    +I +
Sbjct: 1   MSRYLEAFLEYLQINKGVSKNTYEAYKRDLLQFEEYIK---------KPIIEADNMDIIS 51

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+S    +    RSL R LS I SF  +  K  ++   +   ++  K   +LP+ L +++
Sbjct: 52  FLSSIGNK----RSLNRKLSSINSFFDFAYKHGMSDTKH--KIKQAKIPKTLPKFLTKEE 105

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QG 192
            L  + N+        KW D R+ +++  +Y  GLRISEAL+    +I  +   +++   
Sbjct: 106 ILNAIKNI-----KPEKWFDLRDKSLILFIYATGLRISEALNTKISDI--ENGWVKVTMA 158

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG+K RIVP+      AI EY    P          LF     KPL+        ++   
Sbjct: 159 KGEKQRIVPIAKVALDAIEEYLKKRPCQ-----SEYLFVNKDCKPLSRISAFNITKKYL- 212

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                 + + H LRHSFAT L+  G DLR +Q +LGH  L+TTQIYT++  +N  D ++ 
Sbjct: 213 ------NVSPHVLRHSFATALVLGGADLRVVQELLGHSSLNTTQIYTHIQKENLKDTVI- 265

Query: 313 IYDQTHP 319
              + HP
Sbjct: 266 ---KYHP 269


>gi|254518936|ref|ZP_05130992.1| site-specific tyrosine recombinase XerC [Clostridium sp. 7_2_43FAA]
 gi|226912685|gb|EEH97886.1| site-specific tyrosine recombinase XerC [Clostridium sp. 7_2_43FAA]
          Length = 457

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 100/327 (30%), Positives = 151/327 (46%), Gaps = 38/327 (11%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE--------- 55
           NLPE V         ++L  LE  +G S  T++ YE D   F  FL  Y           
Sbjct: 140 NLPESVV--------DFLNYLETIKGKSPNTIKGYEIDLTLFFRFLKIYKGLITDDSLEF 191

Query: 56  -----EKITIQTIRQLSYTEIRAFIS---KRRTQKIGDRSLKRSLSGIKSFLKYLKKR-K 106
                  I    +R++  T++ AF+S   K+R      R   R ++ +KS+ K+L  + K
Sbjct: 192 SEIDIRDIDNSFVRKIKLTDLYAFLSFAEKQRENGSYAR--ARKVAALKSYFKFLNGKAK 249

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
           I  ++  L + + K +   P  L+  +++ L     L +  +      R+  IL L   C
Sbjct: 250 IIDDNPTLELESPKINKRHPVYLSLDESVNL-----LSSLDKDNKNYYRDYCILTLFLNC 304

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNI 225
           G+R+SE  S+    I  D  TL I GKGDK R V L  +  KAI  Y  +          
Sbjct: 305 GMRLSELCSIKLDKIKGD--TLTIIGKGDKERTVYLNEACLKAIDNYLAVRDTSKCTPED 362

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNG-GDLRSI 283
           +  L    R KP+N    +  +++     GL     T H LRH+ AT +  +G  D+RS+
Sbjct: 363 KEYLLLSSRYKPINKRTVELLVKKHIFNSGLSNEKYTPHKLRHTAATLMYKHGNVDIRSL 422

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWM 310
           QSILGH  +STTQIYT+V+ +   D +
Sbjct: 423 QSILGHENISTTQIYTHVDEEILRDAV 449


>gi|126698818|ref|YP_001087715.1| putative tyrosine recombinase [Clostridium difficile 630]
 gi|254974757|ref|ZP_05271229.1| putative tyrosine recombinase [Clostridium difficile QCD-66c26]
 gi|255092146|ref|ZP_05321624.1| putative tyrosine recombinase [Clostridium difficile CIP 107932]
 gi|255306126|ref|ZP_05350298.1| putative tyrosine recombinase [Clostridium difficile ATCC 43255]
 gi|255313883|ref|ZP_05355466.1| putative tyrosine recombinase [Clostridium difficile QCD-76w55]
 gi|255516564|ref|ZP_05384240.1| putative tyrosine recombinase [Clostridium difficile QCD-97b34]
 gi|255649664|ref|ZP_05396566.1| putative tyrosine recombinase [Clostridium difficile QCD-37x79]
 gi|260682828|ref|YP_003214113.1| putative tyrosine recombinase [Clostridium difficile CD196]
 gi|260686426|ref|YP_003217559.1| putative tyrosine recombinase [Clostridium difficile R20291]
 gi|115250255|emb|CAJ68076.1| putative phage integrase site-specific recombinase XerD-like
           [Clostridium difficile]
 gi|260208991|emb|CBA62057.1| putative tyrosine recombinase [Clostridium difficile CD196]
 gi|260212442|emb|CBE03323.1| putative tyrosine recombinase [Clostridium difficile R20291]
          Length = 304

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 66/306 (21%), Positives = 134/306 (43%), Gaps = 15/306 (4%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +   + ++  ++ ++ LS+ T+ SY  D ++++ ++   + + + I         +I ++
Sbjct: 1   MDIIEGYIDYIKDKKKLSENTVASYFMDIKKYMEYINQKSIKLVDIVE------NDIISY 54

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + K     +   ++ R +S IKSF  YL    I T +   +++  K        L E++ 
Sbjct: 55  LIKLEKDNVSIATIARMISSIKSFHDYLFLNHICTNNPAKDIKKPKIKKENINILTEEEI 114

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L++   L T    +     + AI  +LYG G+++SE + +  ++I  D   +      
Sbjct: 115 ERLLNFPKLTTPKLIR-----DKAIFEVLYGTGIKVSELVEMNIEDIDLDIDYIYCNSCC 169

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
              R++PL    +  + +Y       + +  +  LF    G+        + I++     
Sbjct: 170 KNQRVIPLCDITKLYLEKYLKEARPKMAVEGEKSLFVSSLGQRFTRQGLWKVIKKYSNLA 229

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            +  +     LRHSFA HLL+ G ++  +  ILG+  LS+ Q+Y N   KN    + E  
Sbjct: 230 NIDKNINPTMLRHSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDKNVRREIKE-- 287

Query: 315 DQTHPS 320
              HP 
Sbjct: 288 --KHPR 291


>gi|227544897|ref|ZP_03974946.1| tyrosine recombinase [Lactobacillus reuteri CF48-3A]
 gi|300910076|ref|ZP_07127536.1| integrase/recombinase XerD [Lactobacillus reuteri SD2112]
 gi|227185109|gb|EEI65180.1| tyrosine recombinase [Lactobacillus reuteri CF48-3A]
 gi|300892724|gb|EFK86084.1| integrase/recombinase XerD [Lactobacillus reuteri SD2112]
          Length = 297

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 75/308 (24%), Positives = 138/308 (44%), Gaps = 17/308 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E   +L  L+ +R LS  TL SY+ D  Q + +L     E   I   +Q+ +  +   ++
Sbjct: 4   EVAAFLAFLKDKRQLSDNTLMSYQRDLEQTVTYL-----EDRGIDDWQQVDHYLLIDLLN 58

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRALNEKQA 134
             R Q   + ++ R +S ++ F KY+ +    T + +  + +         P  L EK+ 
Sbjct: 59  SLRQQGKANSTINRVISSLRQFYKYMIRHHNLTINPMEMIDHQYTFNQPPAPVILTEKEI 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+          +  I  R+ A+L ++   G+R+SE ++L    +  D   L++ GK 
Sbjct: 119 EQLL-----AVPDVSTPIGLRDRALLEIMDATGMRVSEVIALDLTALHLDVKLLQLTGKN 173

Query: 195 DKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           ++ R++PL     K +  Y +   P  L  + +  +F    G PL      + +++    
Sbjct: 174 ERERMIPLSQPAVKWLTGYLNRGRPLLLRDDHETRVFLNAHGYPLTRQGIWKKMKEWVSE 233

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    T  T+R+SFA HL+ NG D++ IQ ILG+  +   Q Y  V+ +     +   
Sbjct: 234 AKIKKEVTPQTMRYSFAVHLIENGADVQLIQEILGYNAMKALQPYLQVSPQQ----LSAN 289

Query: 314 YDQTHPSI 321
           Y + HP  
Sbjct: 290 YMKYHPRA 297


>gi|18310145|ref|NP_562079.1| site-specific tyrosine recombinase XerC [Clostridium perfringens
           str. 13]
 gi|18144824|dbj|BAB80869.1| probable integrase/recombinase [Clostridium perfringens str. 13]
          Length = 450

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 84/312 (26%), Positives = 146/312 (46%), Gaps = 27/312 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE----------EKITIQT-----IR 64
            +L  LE  +G S  T++ Y  D   F  FL  Y            E++ I       I+
Sbjct: 138 EFLNYLENVKGKSLNTVKGYSVDLGLFFKFLKVYKGLENNIELEKIEEVEISDLGDNFIK 197

Query: 65  QLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKS 122
            ++ ++I AF++   + +     +  R ++ +KSF K+L  + K+  E+  + + + K +
Sbjct: 198 DITLSDIYAFLAFLEKVRNNSAYARARKVATLKSFFKFLNSKIKLIDENPTVELESPKIN 257

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
              P  L   Q++T+++++      +      R+  IL L   CG+R+SE  ++  + I 
Sbjct: 258 KRHPVYLTLDQSITVLNSM-----DKGNKNYYRDYCILTLFLNCGMRLSELCNIEIEKIK 312

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPG 241
            D  TL I GKG+K R V L  +   AI  Y             +  LF   + +P+N  
Sbjct: 313 GD--TLTIIGKGNKERTVYLNEASIAAIENYLKNRNDSKATEEAKKYLFLSSKYRPINKR 370

Query: 242 VFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYT 299
             +  +++     G      T H LRH+ AT +   G  D+RS+Q+ILGH  +STTQIYT
Sbjct: 371 SVEILVKKHIENAGFKDQKYTPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQIYT 430

Query: 300 NVNSKNGGDWMM 311
           +V+ +   + + 
Sbjct: 431 HVDDETLREAVK 442


>gi|299144068|ref|ZP_07037148.1| tyrosine recombinase XerC [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518553|gb|EFI42292.1| tyrosine recombinase XerC [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 326

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 84/307 (27%), Positives = 143/307 (46%), Gaps = 23/307 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------------AFYTEEKITIQTIRQ 65
             ++L  L   +G S+ T++ Y  D R FL F+                 + I I  ++ 
Sbjct: 12  VDDFLSYLSTTKGASQTTIKEYYYDIRIFLNFIFVRKGIIDEKSINEIDIDAINIDILKS 71

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKSN 123
           ++  +I A+ S   + +K  +++  R +S I++F  YL  +  +   + I ++   K   
Sbjct: 72  INKMDIYAYNSYLDKIRKNSNKTKYRKISSIRTFFNYLSNKIDVIEFNPIEDIDMPKIEK 131

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            LP  L  +++  L+    +  S        R+ AI+ L   CG+R+SE   L  +++ +
Sbjct: 132 RLPIYLTLEESKLLLKT--VSESKIKDKYKTRDYAIVVLFLNCGMRLSELSGLNIKDVNN 189

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           D  TLR+ GKG+K R + L  +   A+  Y +      N      LF   R   L+    
Sbjct: 190 DN-TLRVTGKGNKERTIYLNNACVNALKNYLNYR----NDTDNKALFLSNRNTRLSNRQI 244

Query: 244 QRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTNV 301
           QR + +     GL     T H LRH+ A+ +   G  D+RS+Q ILGH  ++TTQIYT++
Sbjct: 245 QRMVEKYINASGLDSEKYTVHKLRHTAASLMYQYGDADIRSLQEILGHESVTTTQIYTHI 304

Query: 302 NSKNGGD 308
           N K   +
Sbjct: 305 NDKQLKN 311


>gi|256850237|ref|ZP_05555666.1| integrase-recombinase [Lactobacillus crispatus MV-1A-US]
 gi|262046371|ref|ZP_06019333.1| integrase [Lactobacillus crispatus MV-3A-US]
 gi|256712874|gb|EEU27866.1| integrase-recombinase [Lactobacillus crispatus MV-1A-US]
 gi|260573242|gb|EEX29800.1| integrase [Lactobacillus crispatus MV-3A-US]
          Length = 270

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 70/274 (25%), Positives = 126/274 (45%), Gaps = 10/274 (3%)

Query: 51  AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE 110
             +  E        ++   +I+ ++     +K+   S  R +S + SF ++L +RK+   
Sbjct: 5   ERFWHENGGFPGWTKVRERDIQVYLQHLAERKLARSSQLRKMSSLHSFYRFLTRRKLVAI 64

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
                +   +    LP+   + +   + D++        K +  RN A+  L Y  G+R+
Sbjct: 65  DPTKGITLRRGEKKLPQFFYQPELKQVFDSL-----KGNKPLTMRNLAMFELFYATGMRV 119

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPL 229
           SE  +LT   +  D  T+ + GKG+K R V      +K+++ Y  +  P  L  + +  +
Sbjct: 120 SEVSNLTLNQLDLDLQTILVHGKGNKDRYVAFDDKTKKSLIAYLENARPLLLKNDDEQHV 179

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F   +G  +     +  +++     G+      H LRHSFAT +L+NG DLRS+Q +LGH
Sbjct: 180 FLNNQGTGITSRGIETVMQKTFNQAGISGKVHPHELRHSFATAMLNNGADLRSVQELLGH 239

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
             LS TQIYT+V   +    +   Y +  P   +
Sbjct: 240 SSLSATQIYTHVTMAH----LKSDYQKYFPRNKE 269


>gi|150020077|ref|YP_001305431.1| phage integrase family protein [Thermosipho melanesiensis BI429]
 gi|149792598|gb|ABR30046.1| phage integrase family protein [Thermosipho melanesiensis BI429]
          Length = 282

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 144/305 (47%), Gaps = 29/305 (9%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +   +N+   L   R  S+ TL++Y  D R+FL ++          + I+++   +I  F
Sbjct: 1   MDFLENFSDYLAHVRRHSENTLKAYLKDVRKFLEYIN---------KPIKEIERKDIETF 51

Query: 75  ISKRRTQKI---GDR--SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +      +I     R  ++ R +S + SF  YL+     + + +  +++ +    +P  L
Sbjct: 52  LKALSKGEITENSPRETTISRYISSLNSFFNYLELSGTISNNPMERIKHPRLRRKIPDFL 111

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            E++   L+D     T  + K         + LLY  GLRISE  +L   +I      LR
Sbjct: 112 TEEEIKKLIDVFDEETEMKKK-------LAISLLYYAGLRISELCNLRTTDISFIPPFLR 164

Query: 190 I-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           I  GKG K R+VPL   V   + +Y +L       N ++ +F     K ++P    R+++
Sbjct: 165 IEMGKGRKDRLVPLPDKVLPLLQKYLEL------KNPKIYVFENE-AKHVHPSTVFRWLK 217

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
              +   +      HTLRHS+ATHL+  G +++ +Q +LGH  LSTT IY +V  +   D
Sbjct: 218 DGVKRAKIKKQVHPHTLRHSYATHLIRKGVNIKVVQELLGHTNLSTTSIYLHVADQEKFD 277

Query: 309 WMMEI 313
            + ++
Sbjct: 278 AVKKL 282


>gi|255655227|ref|ZP_05400636.1| putative tyrosine recombinase [Clostridium difficile QCD-23m63]
 gi|296451212|ref|ZP_06892953.1| tyrosine recombinase XerD [Clostridium difficile NAP08]
 gi|296880435|ref|ZP_06904398.1| tyrosine recombinase XerD [Clostridium difficile NAP07]
 gi|296260033|gb|EFH06887.1| tyrosine recombinase XerD [Clostridium difficile NAP08]
 gi|296428676|gb|EFH14560.1| tyrosine recombinase XerD [Clostridium difficile NAP07]
          Length = 304

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 67/306 (21%), Positives = 134/306 (43%), Gaps = 15/306 (4%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +   + ++  ++ ++ LS+ T+ SY  D ++++ ++   + + I I         +I ++
Sbjct: 1   MDIIEGYIDYIKDKKKLSENTVASYFMDIKKYMEYINQKSIKLIDIVE------NDIISY 54

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + K     +   ++ R +S IKSF  YL    I T +   +++  K        L E++ 
Sbjct: 55  LIKLEKDNVSIATIARMISSIKSFHDYLFLNHICTNNPAKDIKKPKIKKENINILTEEEI 114

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L++   L T    +     + AI  +LYG G+++SE + +  ++I  D   +      
Sbjct: 115 ERLLNFPKLTTPKLIR-----DKAIFEVLYGTGIKVSELVEMNIEDIDLDIDYIYCNSCC 169

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
              R++PL    +  + +Y       + +  +  LF    G+        + I++     
Sbjct: 170 KSQRVIPLCDITKLYLEKYLKEARPKMAVEGEKSLFVSSLGQRFTRQGLWKVIKKYSNLA 229

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            +  +     LRHSFA HLL+ G ++  +  ILG+  LS+ Q+Y N   KN    + E  
Sbjct: 230 NIDKNINPTMLRHSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDKNVRREIKE-- 287

Query: 315 DQTHPS 320
              HP 
Sbjct: 288 --KHPR 291


>gi|296129328|ref|YP_003636578.1| integrase family protein [Cellulomonas flavigena DSM 20109]
 gi|296021143|gb|ADG74379.1| integrase family protein [Cellulomonas flavigena DSM 20109]
          Length = 308

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 73/303 (24%), Positives = 137/303 (45%), Gaps = 12/303 (3%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++  +L  +RG+S+ T+++Y  D    L            +  + ++  T +R +++   
Sbjct: 17  DFALHLRAQRGVSEHTVRAYLGDVDHLLNHAVRQ-----GVTRVDEIDLTVLRGWLAAMA 71

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +   ++ R  +  ++F ++       +    L +   +   +LP  L  +    L+D
Sbjct: 72  AADLSRATVARRAAAARTFFRWATHTSRVSADPTLRLGTARAGGALPTVLALEPVTRLLD 131

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                 +     +  R+ A + LLY  G+R+ E       ++   + TLR+ GKGDK R+
Sbjct: 132 AARERAADG-DPVHVRDWATVELLYATGVRVGELCGADVDDLDLQELTLRVVGKGDKQRV 190

Query: 200 VPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP      +A+  +     P  +  +    L  G RG  ++    +  + +L   +G+  
Sbjct: 191 VPFGRPAARAVGAWLATGRPRLVREDSCGALLLGRRGGRIDQRQVRTVVHELAALVGVD- 249

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRH+ ATHLL  G DLR++Q ILGH  LSTTQ YT+V+++     +   ++  H
Sbjct: 250 DVAPHALRHTAATHLLEGGSDLRTVQEILGHASLSTTQRYTHVSAER----LRSAFELAH 305

Query: 319 PSI 321
           P  
Sbjct: 306 PRA 308


>gi|14591576|ref|NP_143658.1| integrase/recombinase [Pyrococcus horikoshii OT3]
 gi|73920474|sp|O59490|XERCL_PYRHO RecName: Full=Probable tyrosine recombinase xerC-like
 gi|3258262|dbj|BAA30945.1| 285aa long hypothetical integrase/recombinase [Pyrococcus
           horikoshii OT3]
          Length = 285

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 93/310 (30%), Positives = 152/310 (49%), Gaps = 43/310 (13%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           EIV+ ++L+E   +   LE+E G SK T++ Y     +F        EE  +       +
Sbjct: 6   EIVNSDILEE---FATYLELE-GKSKNTIRMYTYYLSKFF-------EEGYSP------T 48

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
             +   F++K R      RSL   +  +KS+ K+     +  +S    ++N K   SLP+
Sbjct: 49  ARDALKFLAKLRKSGYSIRSLNLVIQALKSYFKF---EGL--DSEAEKLKNPKIPKSLPK 103

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           +L E +   +V          +   + R+  IL LLYG GLR+SE  +L  +++  ++S 
Sbjct: 104 SLTEDEVKKIV----------SVADNLRDKLILLLLYGAGLRVSELCNLKIEDVNFEKSF 153

Query: 188 LRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---LNPGVF 243
           L ++G KG K R++P+  ++   I  Y          +    LF   R      L+P   
Sbjct: 154 LIVRGGKGGKDRVIPISKTLLFEIERYLKTR-----KDNSPYLFVEKRRNRKDKLSPKTV 208

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              +++  + +GL  + T H LRHSFATH+L  G D+R IQ +LGH  LSTTQIYT V +
Sbjct: 209 WMLVKKYGKKVGL--NVTPHQLRHSFATHMLERGVDIRIIQELLGHANLSTTQIYTKVTT 266

Query: 304 KNGGDWMMEI 313
           K+  + + + 
Sbjct: 267 KHLREAIEKA 276


>gi|256843164|ref|ZP_05548652.1| integrase [Lactobacillus crispatus 125-2-CHN]
 gi|256614584|gb|EEU19785.1| integrase [Lactobacillus crispatus 125-2-CHN]
          Length = 270

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 70/274 (25%), Positives = 126/274 (45%), Gaps = 10/274 (3%)

Query: 51  AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE 110
             +  E        ++   +I+ ++     +K+   S  R +S + SF ++L +RK+   
Sbjct: 5   ERFWHENGGFPGWTKVRERDIQVYLQHLAERKLARSSQLRKMSSLHSFYRFLTRRKLVAI 64

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
                +   +    LP+   + +   + D++        K +  RN A+  L Y  G+R+
Sbjct: 65  DPTQGITLRRGEKKLPQFFYQPELKQVFDSL-----KGNKPLTMRNLAMFELFYATGMRV 119

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPL 229
           SE  +LT   +  D  T+ + GKG+K R V      +K+++ Y  +  P  L  + +  +
Sbjct: 120 SEVSNLTLNQLDLDLQTILVHGKGNKDRYVAFDDKTKKSLIAYLENARPLLLKNDDEQHV 179

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F   +G  +     +  +++     G+      H LRHSFAT +L+NG DLRS+Q +LGH
Sbjct: 180 FLNNQGTGITSRGIETVMQKTFNQAGISGKVHPHELRHSFATAMLNNGADLRSVQELLGH 239

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
             LS TQIYT+V   +    +   Y +  P   +
Sbjct: 240 SSLSATQIYTHVTMAH----LKSDYQKYFPRNKE 269


>gi|255100237|ref|ZP_05329214.1| putative tyrosine recombinase [Clostridium difficile QCD-63q42]
          Length = 304

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 65/306 (21%), Positives = 133/306 (43%), Gaps = 15/306 (4%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +   + ++  ++ ++ LS+ T+ SY  D ++++ ++   + + + I         +I ++
Sbjct: 1   MDIIEGYIDYIKDKKKLSENTVASYFMDIKKYMEYINQKSIKLVDIVE------NDIISY 54

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + K     +   ++ R +S IKSF  YL    I   +   +++  K        L E++ 
Sbjct: 55  LIKLEKDNVSIATIARMISSIKSFHDYLFLNHICANNPAKDIKKPKIKKENINILTEEEI 114

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L++   L T    +     + AI  +LYG G+++SE + +  ++I  D   +      
Sbjct: 115 ERLLNFPKLTTPKLIR-----DKAIFEVLYGTGIKVSELVEMNIEDIDLDIDYIYCNSCC 169

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
              R++PL    +  + +Y       + +  +  LF    G+        + I++     
Sbjct: 170 KNQRVIPLCDITKLYLEKYLKEARPKMAVEGEKSLFVSSLGQRFTRQGLWKVIKKYSNLA 229

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            +  +     LRHSFA HLL+ G ++  +  ILG+  LS+ Q+Y N   KN    + E  
Sbjct: 230 NIDKNINPTMLRHSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDKNVRREIKE-- 287

Query: 315 DQTHPS 320
              HP 
Sbjct: 288 --KHPR 291


>gi|42523751|ref|NP_969131.1| integrase/recombinase XerD [Bdellovibrio bacteriovorus HD100]
 gi|39575958|emb|CAE80124.1| integrase/recombinase XerD [Bdellovibrio bacteriovorus HD100]
          Length = 292

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 125/300 (41%), Gaps = 24/300 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++   L+  RG S+ T+ +Y  D   +L +                 +   +  F    +
Sbjct: 8   DFFDELQNVRGRSQNTVMAYRRDLELYLEYRK---------------TGKTVPGFYEFMK 52

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
             K+  RS  R +S ++++ K+ + R +     +  +R  K    LP+ L  ++   L D
Sbjct: 53  KNKLSTRSQARVISSLRTYFKFCETRGM-KCPELRELRPPKVKVGLPKVLTPQEFQQLFD 111

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                         ARN   L  LYG G R+SE + L   +       +++ GKG+K R+
Sbjct: 112 ----AAEVPDAVKTARNQLTLLFLYGLGCRVSELIGLNVVDFNQTDRWIKVLGKGNKERL 167

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPL   + + +  Y       L       +    RG   +     R++       G    
Sbjct: 168 VPLTEKLAENLTVYLKEHRMALVKENSPSILINDRGHRPSRVDVWRWLAAWSARAGFAEP 227

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H  RH  AT LL +G DLRSIQ +LGH  + TTQIYTNV +    + M +  ++ HP
Sbjct: 228 VNPHRFRHGCATALLESGADLRSIQMLLGHASIQTTQIYTNVTT----NTMTKTIEEHHP 283


>gi|167945040|ref|ZP_02532114.1| tyrosine recombinase XerD [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 227

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 118/223 (52%), Gaps = 6/223 (2%)

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R +  I+ F K+L K K+ +   + N+   K   SLP  ++ K+   L+D+V        
Sbjct: 5   RHIITIRGFYKFLIKEKLISFDPVKNIDIPKTGLSLPEVISSKEMELLIDSVDTKNPR-- 62

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
                RN+A+L  LYG GLR+SE +S+  +NI  + S +RI GKG K RIVP+     + 
Sbjct: 63  ---GLRNAAMLETLYGAGLRVSELVSMKMENINLEASFIRIFGKGSKERIVPIGSFAIEK 119

Query: 210 ILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           +  +     P  L       LF    GKP+    F + +++  R  G+    T HT RHS
Sbjct: 120 VRNWIMHGRPIILKNIPSHYLFVARAGKPMTRQGFWKLLKKYSRASGISKKITPHTFRHS 179

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           FATHLL  G DLRS+Q++LGH  +STTQIYT+V+       + 
Sbjct: 180 FATHLLEGGADLRSVQTMLGHSDISTTQIYTHVSRDYLRKCIK 222


>gi|325479493|gb|EGC82589.1| phage integrase, N-terminal SAM domain protein [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 329

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 81/329 (24%), Positives = 149/329 (45%), Gaps = 30/329 (9%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL--------------A 51
           + EI+   L+    ++L  L+  RGLS  T++ Y  D    + F+               
Sbjct: 1   MKEIIQPILIT---DYLNYLKSIRGLSSNTIKEYSYDLNLLIRFMIVRKIYYGNIVKFNK 57

Query: 52  FYTEEKIT----IQTIRQLSYTEIRAFISKRRTQKI-GDRSLKRSLSGIKSFLKYLKKR- 105
            + +++I           L+  +  +++S    +K     +  R +S IKSF KYL    
Sbjct: 58  EFNDDEINSIINPSFFETLTLQDFYSYLSYLDNEKNDTASTRSRKISAIKSFYKYLYSEI 117

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
           ++   +    + N K S   P  L   +   L+D +    + +  ++ +R+ AI++    
Sbjct: 118 EVINSNVSEKLTNPKISQRQPVYLTLTETERLLDTI---NNEKNDFLRSRDLAIVFTFLT 174

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
            G+R+SE +S+   +I++D     I GKG+K R V L  +  + I  Y  +    +    
Sbjct: 175 TGMRLSELVSIDITDIVNDH--FNIIGKGNKERTVYLTDNCLQLIYSYILVRAKYIGDKD 232

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNG-GDLRSI 283
              LF   R K ++    Q  I +  +  G   S  + H LRH+ AT +   G  D+R++
Sbjct: 233 IDALFISTRKKRISNRAVQSTIDKYLKKAGFDTSIYSTHKLRHTAATLMYKYGNVDIRAL 292

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           + ILGH  +STTQIYT+++  +  + + +
Sbjct: 293 KDILGHSNVSTTQIYTHLDDDDLKNAVNK 321


>gi|126640131|ref|YP_001083115.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC
           17978]
 gi|126386015|gb|ABO10513.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC
           17978]
 gi|322506426|gb|ADX01880.1| Site-specific tyrosine recombinase [Acinetobacter baumannii 1656-2]
 gi|323517823|gb|ADX92204.1| site-specific tyrosine recombinase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|323519204|gb|ADX93585.1| site-specific tyrosine recombinase [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 310

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 89/315 (28%), Positives = 152/315 (48%), Gaps = 21/315 (6%)

Query: 18  RQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
            + WL + L      S  T+ + +     F  +         T   + ++  ++IR FI+
Sbjct: 8   LKKWLDEYLLA--NKSNETIYTLKNSLNLFFEY---------TNLALEEIEASDIRTFIA 56

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            R    +G  +LK+++S I++F  YL K K+   +   +++  K S  LP+         
Sbjct: 57  YRAQNGVGVSTLKKNISAIRTFFHYLTKEKLINFNPAEDIKIKKSSKVLPKFHEVTVINE 116

Query: 137 LVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           ++D+   L      +  I  R+ A++ + Y CGLR+ E  SL  +N+   +  +R+ GKG
Sbjct: 117 VLDSNKNLEFERPSSTVIFKRDLALIEIAYSCGLRLEEIHSLQIENVEVKRKQVRVTGKG 176

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNI---QLPLFRGIRGKPLNPGVFQRYIRQLR 251
           +K RI+PL     +A LE+  L    +N +       +F    G  L+     + I+   
Sbjct: 177 NKTRIIPLGSKAIEAYLEWLPLREEIMNKDTNQKHNYVFVTTTGAQLSRVQINKRIKNAF 236

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +  G P+ +  H LRHSFATHL++N   +R IQ +LGH  L+TTQIYT+++       M 
Sbjct: 237 KLAGYPIQSNPHMLRHSFATHLINNSVGIREIQEMLGHSNLNTTQIYTDLD----HTSMT 292

Query: 312 EIYDQTHPSITQKDK 326
            +Y  THP   +  +
Sbjct: 293 NVYMDTHPRAVKNTE 307


>gi|291542679|emb|CBL15789.1| Site-specific recombinase XerD [Ruminococcus bromii L2-63]
          Length = 327

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 84/332 (25%), Positives = 147/332 (44%), Gaps = 31/332 (9%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-------------EKIT 59
           E     +++L   +  + +SK T+  Y  D R F  FL                  + + 
Sbjct: 8   EAPAILKDYLIYKQTIKNMSKKTVDEYFIDLRTFFRFLKVMRGLVPDGTEFDEIKIDDVD 67

Query: 60  IQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMR 117
           +  I+ ++      +++   R +     S  R  S +K F KY+   + +   + +  + 
Sbjct: 68  LDLIKTVNLELAYDYMNFLYRDRNNKSASRARKCSSLKGFFKYITNNKHLLDTNPVEQLE 127

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           + K   +LP+ L  +Q++ L++ V  +           +  IL L   CGLR+SE   L 
Sbjct: 128 SPKNKKALPKYLTLEQSIELLNAVDGNNKQR-------DYCILTLFLNCGLRVSEMAGLN 180

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
             +I  D  T+R+ GKG+K RIV L  +   A  EY  + P D  +  +  LF     + 
Sbjct: 181 YNDIHSD-GTMRVVGKGNKERIVYLNSACIDAYNEYMKVRPID-EVKDKKALFISRNHRR 238

Query: 238 LNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTT 295
           ++    Q  + +    +GL     + H LRH+ AT +   G  D+R ++ +LGH  L TT
Sbjct: 239 MSVKTIQAMVYKYLEKIGLDSQGYSCHKLRHTAATLMYQQGGVDVRVLKEVLGHENLGTT 298

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
           +IYT+++S+     M    D ++P    K KK
Sbjct: 299 EIYTHLSSEQ----MKNAAD-SNPLAKIKPKK 325


>gi|188589919|ref|YP_001921531.1| tyrosine recombinase XerD [Clostridium botulinum E3 str. Alaska
           E43]
 gi|251778368|ref|ZP_04821288.1| tyrosine recombinase XerD [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|188500200|gb|ACD53336.1| tyrosine recombinase XerD [Clostridium botulinum E3 str. Alaska
           E43]
 gi|243082683|gb|EES48573.1| tyrosine recombinase XerD [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 292

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 76/308 (24%), Positives = 142/308 (46%), Gaps = 16/308 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++    N+ + L  + G S+ T+ +Y  D   +L FL    ++ I I    +L+   + A
Sbjct: 1   MVDSINNYKEYL-FDSGKSENTIYAYVTDVTLYLKFL---DKKGIDIYKSDKLT---VMA 53

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +I         +RS+ R +  ++SF  YLK + +  E   +  ++ K +  LP+ L   +
Sbjct: 54  YIQYLLESGKSERSINRIVISLRSFYSYLKSQSLINEVPKIEYKSSKNNRKLPQILTVDE 113

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++      T  +      R++A+L L+Y  G+++SE +SL   +I  +   +R    
Sbjct: 114 VDKII-----RTVEKDCPKGIRDNALLELMYATGMKVSELISLNVDDINLELHFVRCTDS 168

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            +  R++P+  S  KA+ EY  +        +   LF  + G  L      R +++  + 
Sbjct: 169 RNFERLIPIGRSACKALNEYLSIRYKIAECGVPN-LFVNLNGNKLTRQGIWRIVKEYSKR 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +      +T RHSFA HLL NG ++R++Q +LG+  L+    Y  + +    D +  I
Sbjct: 228 AHIDKDVNLNTFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTYYEIIN---NDKINFI 284

Query: 314 YDQTHPSI 321
           Y  THP  
Sbjct: 285 YMNTHPRA 292


>gi|289450299|ref|YP_003475200.1| site-specific tyrosine recombinase XerC [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289184846|gb|ADC91271.1| site-specific tyrosine recombinase XerC [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 366

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 79/317 (24%), Positives = 141/317 (44%), Gaps = 30/317 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-------------EKITIQTIRQL 66
           ++L  L   +G S LT++ Y  D   F  +     +             + IT   + Q+
Sbjct: 47  DFLAYLSGIKGRSALTIKEYHYDLVLFFRYYKILQKRVPHDLDFRAIPLDDITEADLNQI 106

Query: 67  SYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKSNS 124
               + +FI      +K    +  R ++ ++SF KY   + ++  E+    + + K+   
Sbjct: 107 DLKILYSFIGWLANEKKASTANRSRKIATLRSFFKYHHTKTRLIKENPAAELESPKQLKK 166

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
            PR L  +++  L+  V    S+ ++     +  IL L   CGLR++E   +   +I   
Sbjct: 167 QPRYLEVEESKQLLQTVAQANSNFSQR----DYCILTLFLNCGLRLAELCGINLGDI--G 220

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-------LNIQLPLFRGIRGKP 237
           + TLR+ GKG K R V L  +   A+  Y        N          + PLF   +G  
Sbjct: 221 EDTLRVLGKGGKERTVYLNGACIAALNAYLPERKQQKNSFNSAEKKQAETPLFISRQGNR 280

Query: 238 LNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTT 295
           ++    Q  +R+     GL P   T H LRH+ AT +   G  D+R +Q ILGH  ++TT
Sbjct: 281 ISHPAVQLLVRKYIILAGLDPHKYTPHKLRHTAATLMYKYGHVDIRMLQQILGHSSVATT 340

Query: 296 QIYTNVNSKNGGDWMME 312
           +IYT++++ +  + + +
Sbjct: 341 EIYTHLDADSLHNAVEK 357


>gi|15639382|ref|NP_218831.1| integrase/recombinase (codV) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025624|ref|YP_001933396.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14]
 gi|3322669|gb|AAC65375.1| integrase/recombinase (codV) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018199|gb|ACD70817.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14]
 gi|291059781|gb|ADD72516.1| tyrosine recombinase XerD [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 306

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 138/291 (47%), Gaps = 21/291 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q++   L      + LT ++Y      F   L            I   +  +   FI K
Sbjct: 8   VQSFYAYLISAEAHALLTARTYVTTLMLFQKNLD-------PPCNIESANAHDCVRFIEK 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R    +  +++ + ++ + +F ++L   ++  ++ + ++   +++ SLPR L+ +Q  T 
Sbjct: 61  RSAAGVSGKTIAKDMAALHAFYQFLILEQVRPDNPMQDVDAPRRAYSLPRVLSPEQVNTF 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           + ++ L T         R+ A+  L+Y  GLR+SEA+SL+  +I   +  L++ GKG+K 
Sbjct: 121 LQSIPLCTPG-----GVRDRALFELIYAAGLRVSEAVSLSLSDIFFAERLLKVTGKGNKE 175

Query: 198 RIVPLLPSVRKAILEYYDLCP-------FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           R+ P        +++Y               N   +  +F   +G  L+     + ++ +
Sbjct: 176 RMAPFGEQACYFLMQYIREARVRFTSAKHPENSEKKGAVFLNRQGGRLSRKGIWKRLQDI 235

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               G+      HT RHS+ATHLL+ G DL S+Q +LGH  ++TTQ+YT+V
Sbjct: 236 EIRSGVETHV--HTFRHSYATHLLAGGVDLHSVQCLLGHADIATTQVYTHV 284


>gi|227484989|ref|ZP_03915305.1| possible tyrosine recombinase XerC [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236986|gb|EEI87001.1| possible tyrosine recombinase XerC [Anaerococcus lactolyticus ATCC
           51172]
          Length = 329

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 76/315 (24%), Positives = 142/315 (45%), Gaps = 27/315 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFL---AFYTEEKITIQT-------------- 62
           ++L  L+  +GLS+ T++ Y  D   F+ +      Y   K   +               
Sbjct: 12  DYLNYLKSIKGLSESTIKEYAYDLETFIEYQIVRKIYNNNKKDYENDFDYKKINFFVDNI 71

Query: 63  -IRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNL 119
              +++  +  AF+S     +     +  R +S IKSF KY+    ++   +    + N 
Sbjct: 72  FFEKITIQDFYAFLSYLDNDKNDSATTRSRKISAIKSFYKYMYSEIEVINTNIADKLTNP 131

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K S   P  L   +   L++ +   +  +  ++ AR+ AI++     G+R+SE +S+   
Sbjct: 132 KISQRQPVYLTLSETERLIETI---SKEKNTFLKARDLAIVFTFLTTGMRLSELISIDLS 188

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           ++  D  +  I GKG+K R V L  + +  I  Y  +    L  +    LF   R   ++
Sbjct: 189 DVNKD--SFNIIGKGNKERTVYLTKNCQDLINNYIVIRSEYLKDDTVNALFISTRKNRIS 246

Query: 240 PGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQI 297
               Q  I +     G   S  + H LRH+ AT +   G  D+R+++ ILGH  +STTQI
Sbjct: 247 NRAVQSTIEKYLAKAGFDTSVYSTHKLRHTAATLMYKYGNVDIRALKDILGHASVSTTQI 306

Query: 298 YTNVNSKNGGDWMME 312
           YT++++++  + + +
Sbjct: 307 YTHLDNEDLKNAVNK 321


>gi|295093615|emb|CBK82706.1| Site-specific recombinase XerD [Coprococcus sp. ART55/1]
          Length = 306

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 75/308 (24%), Positives = 142/308 (46%), Gaps = 19/308 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +N+L+    ++ L + TL++Y+ D +QF  +L            I  +S + +  +I +
Sbjct: 8   IKNYLEYCGKQKCLDEKTLKAYKIDLKQFSDYLCS--------SDITNVSTSILEDYIGE 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALT 136
               K   +++KR ++  K+F  YL+ ++I   +    ++   ++   LP+ +  +   T
Sbjct: 60  LH-NKYKPKTVKRKIASAKAFFHYLEYKEILDRNPFNKLQIKFREPVILPKTIPLRTVET 118

Query: 137 LV----DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           ++    + +    +   +    R++A++ LL+  G+RISE  +L   +I     ++ I G
Sbjct: 119 ILSTIYEQLNCAKTIYQRRNSLRDAAVIELLFATGMRISELCALKVNDINLYDGSILIYG 178

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KGDK R + +      +IL  Y++  F   +      F    G+ L     +R I +   
Sbjct: 179 KGDKERRLQIGNPSVISILNKYEV-DFHSEIMNCNHFFANQSGRSLTDQTVRRMINKYTA 237

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              + L  T H  RH+FAT LL    D+R IQ +LGH  ++ T+IYT+V        +  
Sbjct: 238 LAAIDLHITPHMFRHTFATSLLEADVDIRYIQEMLGHSSINITEIYTHVALAKQRSILA- 296

Query: 313 IYDQTHPS 320
                HP 
Sbjct: 297 ---TKHPR 301


>gi|218513302|ref|ZP_03510142.1| site-specific tyrosine recombinase XerC [Rhizobium etli 8C-3]
          Length = 210

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 103/217 (47%), Positives = 143/217 (65%), Gaps = 8/217 (3%)

Query: 105 RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLY 164
           + +   +    +R+ K+  SLP+ L++ QA+T+V N      H+  WI AR++A++ LLY
Sbjct: 2   KGLVNAAGAAAIRSPKQPKSLPKPLSDTQAITVVSNE--AQLHDEPWIAARDAAVMTLLY 59

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
           GCGLRISEAL L P ++    +TLRI GKG+K R+VPLLP V  A+ +Y  LCP+ L  +
Sbjct: 60  GCGLRISEALDLVPADLPKGAATLRITGKGNKTRLVPLLPVVFDAVEKYRALCPYHLEND 119

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
              PLFRG RG  L   + QR +++LR   GLP + T H LRHSFATHLL+ GGDLR+IQ
Sbjct: 120 A--PLFRGARGGKLQAAIIQRAMQKLRSAFGLPETATPHALRHSFATHLLAGGGDLRTIQ 177

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            +LGH  LSTTQ+YT V++      ++E+YD+ HP  
Sbjct: 178 ELLGHASLSTTQVYTGVDASR----LLEVYDRAHPRA 210


>gi|219854815|ref|YP_002471937.1| hypothetical protein CKR_1472 [Clostridium kluyveri NBRC 12016]
 gi|219568539|dbj|BAH06523.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 355

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 89/330 (26%), Positives = 143/330 (43%), Gaps = 33/330 (10%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
             +L +I + EL     ++L  L   +G SK TL+ Y+ D   FL FL  Y   +     
Sbjct: 29  KYSLNQIYNPELPGYLNDFLNYLGTIKGKSKNTLEGYKVDLTMFLRFLKLYKGLEKEGSQ 88

Query: 63  IR-------------QLSYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKR 105
                          Q++ +++ AFIS     R  +        R ++ +KSF KYL  +
Sbjct: 89  FEKIKIKDIDIDIIKQITLSDLFAFISFIENYRHNKSYAR---ARKVASLKSFFKYLCSK 145

Query: 106 -KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLY 164
            K+ +E+  L + + + S   P           +    L           R+  I+    
Sbjct: 146 AKLISENPALELESPQISKRNP-------IYLSLKESKLLLESIDGKFKERDYCIITFFL 198

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL- 223
            CG+R+SE  S+   NI +D  TL + GKG+K R + L  S  +A+  Y       LN  
Sbjct: 199 NCGMRLSELCSINISNIKED--TLTVIGKGNKERTIYLNKSCLEALKNYLTSRDEYLNKI 256

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLR 281
             +  LF       +N    +  +++  +   L     T H LRH+ AT +   G  D+R
Sbjct: 257 KDKDALFISKNYARINKRSVEIMLKKYLKKANLDSEKYTPHKLRHTAATLMYKYGHVDIR 316

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           S+Q ILGH  +STTQIYT+V+ +   + + 
Sbjct: 317 SLQKILGHENVSTTQIYTHVDDERLREAIK 346


>gi|311744114|ref|ZP_07717920.1| integrase/recombinase XerD [Aeromicrobium marinum DSM 15272]
 gi|311313244|gb|EFQ83155.1| integrase/recombinase XerD [Aeromicrobium marinum DSM 15272]
          Length = 306

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 74/303 (24%), Positives = 133/303 (43%), Gaps = 11/303 (3%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++  +L  ER LS  T++SY  D R            ++ I     ++   +R+ ++  +
Sbjct: 14  DYEHHLTRERDLSPHTVRSYLVDVRGLAEHAT-----RLGIHDPAAMTIRTLRSHLATLK 68

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           +      +L R  + ++ F  +L++           + +     +LP  L+      ++D
Sbjct: 69  SLGRARATLSRRATALRVFTAWLQRSGRADLDVGALLASPAARRTLPATLSAADMREVLD 128

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                          R+ AIL LLY  G+R+ E + L   ++   +  +R+ GKG K R 
Sbjct: 129 A-ATAMIDGDPVTGTRDLAILELLYATGVRVGELVGLDLDDVDRSRRVVRVLGKGRKERT 187

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP     + A+  +  +    +   I    +  G+RG  ++P   ++ +      +    
Sbjct: 188 VPFGLPAQDALDAWLAVGRPAVATPISGHAVLLGVRGGRIDPRTVRQVVHDRLGAVDGVA 247

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRH+ ATHLL  G DLRS+Q +LGH  L TTQIYT+V+++     +   + Q H
Sbjct: 248 DLGPHGLRHTAATHLLEGGADLRSVQEVLGHASLGTTQIYTHVSNER----LRAAFRQAH 303

Query: 319 PSI 321
           P  
Sbjct: 304 PRA 306


>gi|291557209|emb|CBL34326.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a]
          Length = 301

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 81/316 (25%), Positives = 137/316 (43%), Gaps = 25/316 (7%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L      +L+    +R L+  T ++Y  D  QF  F +    + I            I 
Sbjct: 2   DLTNNITEYLRYCSEQRTLNSKTTKAYRTDLLQFAEFSSGMFSKDI------------II 49

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNE 131
           ++I     Q    ++ +R ++ +K+F  YL  ++I   +    +  + ++   LP+ +  
Sbjct: 50  SYIGCLHRQ-FKPKTARRKIASLKAFAHYLMIQEIINANPFDKIDTSFREPMVLPKVIPM 108

Query: 132 KQALTLV----DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
                ++    D      +  ++    RN A+L +L+  G R+SE  +LTP  +     T
Sbjct: 109 NIISEILANAYDVFCQCNTDFSRRNAVRNIAVLEILFATGARVSEICTLTPDMVDLTNHT 168

Query: 188 LRIQGKGDKIRIVPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           ++I GKG + RI+ +  P V +A+  YY+    D+  +     F     + L     +  
Sbjct: 169 IKIFGKGSRERIIQIENPDVLEALNRYYETFRSDILESGFF--FVNKLHQRLTEQSVRVM 226

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           I      +G     T H  RHSFAT LL    D+R IQ ILGH  ++TTQIYT+V+    
Sbjct: 227 ISNQAAAIGYNKHITPHMFRHSFATLLLEEDVDIRYIQKILGHSSIATTQIYTHVSMAKQ 286

Query: 307 GDWMMEIYDQTHPSIT 322
                EI    HP   
Sbjct: 287 ----KEILSVKHPRNK 298


>gi|253988429|ref|YP_003039785.1| integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253988435|ref|YP_003039791.1| integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253990473|ref|YP_003041829.1| integrase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|211638960|emb|CAR67575.1| probable integrase/recombinase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779879|emb|CAQ83040.1| putative integrase/recombinase [Photorhabdus asymbiotica]
 gi|253779885|emb|CAQ83046.1| putative integrase/recombinase [Photorhabdus asymbiotica]
 gi|253781923|emb|CAQ85087.1| putative integrase [Photorhabdus asymbiotica]
          Length = 472

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 90/336 (26%), Positives = 148/336 (44%), Gaps = 25/336 (7%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
           E +  P+ +       RQ+    LE  RG  LS+ T +SYE     F+ +      E   
Sbjct: 131 ETHGQPDAIPARFATLRQHLAAWLEAVRGQGLSERTQESYEERLLPFISWC-----EARG 185

Query: 60  IQTIRQLSYTEIRAFISKRRT------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI 113
           + T  Q+S   + ++    R+      Q     S +  LS ++ + ++L +R     +  
Sbjct: 186 VMTAPQVSLPLLESYQRWLRSSRKANGQPYSPGSQRDRLSVLRQWFRWLLQRHHILYNPT 245

Query: 114 LNMRNLKKSNSLP-RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
            NM   ++   LP + +NE +  T++       +        RN AIL +L+  G+R  E
Sbjct: 246 DNMVLPREEKRLPAQVMNEDETHTVL-----AATDINTPTGLRNRAILEVLWSTGIRRME 300

Query: 173 ALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
             +L    +   +  + ++ GKG K R+VP+       +  +  + P          LF 
Sbjct: 301 VANLLLSEVDFGRGVVLVRQGKGGKDRVVPIGEQALHWLSRWLSVRPELTRRGDSGHLFI 360

Query: 232 GIRGKPLNPGVF-QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +G+ L  G   Q     +R+   L      H  RHS AT +L NG D R IQ+ILGH 
Sbjct: 361 TKKGRGLARGTLTQIAADSIRKQAQLAKPGACHLFRHSMATQMLENGADTRHIQAILGHE 420

Query: 291 RLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
           +L TTQIYT V   +    + E+++QTHP+  Q  +
Sbjct: 421 KLETTQIYTRVAIGH----LKEVHEQTHPAERQSKQ 452



 Score = 38.0 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 83/249 (33%), Gaps = 30/249 (12%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS---YTE 70
           L +    +L  L ++ G S+ +  +       F+ +      E+  I +  Q++      
Sbjct: 16  LRQHLDAYLDTLLLQ-GASQKSQSARHERLSPFVNWC-----EEQGILSASQVTGPLLEN 69

Query: 71  IRAFISKRRT---QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
            + ++++ R    Q     S +R L  ++ +  +L+++     S    +    +      
Sbjct: 70  WQQYLARYRKTNGQPYTPDSQRRRLRALRLWFDWLQQQHAIPTSPAATLAAPDRKKRPSV 129

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
                Q   +              +    +A L  + G GL  SE      Q   +++  
Sbjct: 130 TETHGQPDAI--------PARFATLRQHLAAWLEAVRGQGL--SE----RTQESYEERLL 175

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
             I     + R V   P V   +LE Y             P   G +   L+  V +++ 
Sbjct: 176 PFI--SWCEARGVMTAPQVSLPLLESYQRWLRSSRKANGQPYSPGSQRDRLS--VLRQWF 231

Query: 248 RQLRRYLGL 256
           R L +   +
Sbjct: 232 RWLLQRHHI 240


>gi|124006143|ref|ZP_01690979.1| integrase, site-specific recombinase [Microscilla marina ATCC
           23134]
 gi|123988320|gb|EAY27973.1| integrase, site-specific recombinase [Microscilla marina ATCC
           23134]
          Length = 296

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 79/308 (25%), Positives = 151/308 (49%), Gaps = 17/308 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L+++ + +  S+ T+ SY  D +QF  +L    +E   ++      +  IR+++ +
Sbjct: 2   IKSFLKHI-LAKRYSQNTITSYNHDLQQFSTYL----QEIHRLEEPEHADHNMIRSWVLQ 56

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +K    S+ R ++ +KSF KYL+ +    ++    ++ +K     P  + E++ L L
Sbjct: 57  LTEEKANVTSINRKIATLKSFYKYLQNQGFIKKNPAQRLKPMKVPKKAPIFVEEEKMLQL 116

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----QGK 193
           ++ V      E      R+   + +LYG G+R+SE ++L  Q++   +  +RI      K
Sbjct: 117 LNTVQYPAGIE----GLRDKFTIEILYGTGMRLSELINLQIQHVDFQKLRIRIPEKNNLK 172

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            +K R + +   +   + +Y           +   +     GKP  P +  R +++  + 
Sbjct: 173 KEKERNISVAKPLLDLLQQYEKSKQQTYGKLVHNHVLVTDEGKPAYPMLIYRTVKKYLQL 232

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +      + H LRHSFATHLL+ G DL  ++ +LGH  LSTTQ Y++    N  D + EI
Sbjct: 233 ITDQEKKSPHVLRHSFATHLLNKGADLHEVKDMLGHTTLSTTQAYSH----NSLDQIKEI 288

Query: 314 YDQTHPSI 321
           ++Q HP  
Sbjct: 289 FNQAHPKA 296


>gi|312977299|ref|ZP_07789047.1| integrase/recombinase XerC [Lactobacillus crispatus CTV-05]
 gi|310895730|gb|EFQ44796.1| integrase/recombinase XerC [Lactobacillus crispatus CTV-05]
          Length = 270

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 70/274 (25%), Positives = 125/274 (45%), Gaps = 10/274 (3%)

Query: 51  AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE 110
             +  E        ++   +I+ ++     +K+   S  R +S + SF  +L +RK+   
Sbjct: 5   ERFWHENGGFPGWTKVRERDIQVYLQHLAERKLARSSQLRKMSSLHSFYHFLTRRKLVAI 64

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
                +   +    LP+   + +   + D++        K +  RN A+  L Y  G+R+
Sbjct: 65  DPTQGITLRRGEKKLPQFFYQPELKQVFDSL-----KGNKPLTMRNLAMFELFYATGMRV 119

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPL 229
           SE  +LT   +  D  T+ + GKG+K R V      +K+++ Y  +  P  L  + +  +
Sbjct: 120 SEVSNLTLNQLDLDLQTILVHGKGNKDRYVAFDDKTKKSLIAYLENARPLLLKNDDEQHV 179

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F   +G  +     +  +++     G+      H LRHSFAT +L+NG DLRS+Q +LGH
Sbjct: 180 FLNNQGTGITSRGIETVMQKTFNQAGISGKVHPHELRHSFATAMLNNGADLRSVQELLGH 239

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
             LS TQIYT+V   +    +   Y +  P   +
Sbjct: 240 SSLSATQIYTHVTMAH----LKSDYQKYFPRNKE 269


>gi|302343256|ref|YP_003807785.1| integrase family protein [Desulfarculus baarsii DSM 2075]
 gi|301639869|gb|ADK85191.1| integrase family protein [Desulfarculus baarsii DSM 2075]
          Length = 304

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 65/308 (21%), Positives = 120/308 (38%), Gaps = 13/308 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE----EKITIQTIRQ 65
              +L    + +   L  E G S  T+ +Y  D                   +T   + Q
Sbjct: 6   ADLDLTGATEAFCARLSAE-GRSPATIAAYRRDLALVARVAGELAPGIVCRAVTAGFLDQ 64

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +        +++         S+ R  + +++F  +  +  +  ++   ++R  +    L
Sbjct: 65  VFSD---GAVTESERGPRSAASVHRMKAAVRAFFAWAVEVGVVDDNPARSIRMHRLPRKL 121

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P  L   +   L    L      T +   R+ A++ +L G G+R+ E  +L   +I  D 
Sbjct: 122 PVFLTTAEKKRL----LKELKGRTDFSALRDRAMIEVLLGTGIRLGELAALDMDDIDLDA 177

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             LR++ KG+  ++  +   +R  +  Y           ++  LF   R   L       
Sbjct: 178 KHLRVRAKGNVPQVKFIKTDLRTLLRRYLAERRRHGRPEME-ALFLSNRDGRLCQRQIAN 236

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +    R  G+    T H LRH+FATHL S   DL  +Q  LGH  +STTQ+YT++    
Sbjct: 237 RLAHWLRKAGIEKELTPHGLRHTFATHLYSATNDLLVVQRALGHRDVSTTQVYTHLVDGQ 296

Query: 306 GGDWMMEI 313
             + +  +
Sbjct: 297 LEEALERL 304


>gi|282856363|ref|ZP_06265642.1| tyrosine recombinase XerD [Pyramidobacter piscolens W5455]
 gi|282585734|gb|EFB91023.1| tyrosine recombinase XerD [Pyramidobacter piscolens W5455]
          Length = 297

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 72/314 (22%), Positives = 136/314 (43%), Gaps = 19/314 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +       R  +   + +ERG SK T ++Y      +  +      + +       ++  
Sbjct: 1   MPASFETSRAAFEDYILLERGHSKNTAETYRRGLELWRGYCEAAGLDPL------DVAQE 54

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +  FI   + Q     S++  ++G++S++K+         +  + +    K+  LP+ L
Sbjct: 55  ALSTFIHALKGQGRAGSSIQLIVAGLRSWVKFRVLNGDLPMNTWIPV-LPAKAKKLPKIL 113

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            E +   +++           + D R+   L  L  CG+R SE   L   ++  D   L 
Sbjct: 114 TEGEIQRILNAC-----DGPGYYDCRDRTALETLANCGVRASELCGLKVGSLNLDDKNLI 168

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIR 248
           + GKG K R +P    +++    Y       L+ +  +  LF   R +PL+     R ++
Sbjct: 169 VFGKGSKERQIPFAEDLKRQFQIYLQKRLEFLDGDETEKMLFLSSRREPLSRVDLWRIVQ 228

Query: 249 QLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +  +   +P      H LRHS ATHLL  G DLR++Q  LGH  ++TT+ Y + + +   
Sbjct: 229 KRGKMASVPEERLFPHVLRHSIATHLLRRGMDLRTLQEFLGHSSIATTEKYLHFDLE--- 285

Query: 308 DWMMEIYDQTHPSI 321
             + ++YD+ HP  
Sbjct: 286 --LRDVYDRAHPRA 297


>gi|312869134|ref|ZP_07729308.1| phage integrase, N-terminal SAM domain protein [Lactobacillus oris
           PB013-T2-3]
 gi|311095380|gb|EFQ53650.1| phage integrase, N-terminal SAM domain protein [Lactobacillus oris
           PB013-T2-3]
          Length = 295

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 73/309 (23%), Positives = 134/309 (43%), Gaps = 15/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +    +L  L+  +G S  TL SY  D  Q   FL     +   +     +   ++ A
Sbjct: 1   MEELVDKYLAYLKGSQGRSANTLMSYRRDLDQAAAFL-----QAQGVGKWSAVDQYQLLA 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEK 132
            I++++ +     ++ R LS ++ F +YL + +    + +  + N + +  LP   L E 
Sbjct: 56  LIAEQKKRGRSPATINRQLSALRQFYRYLVRHQQLRFNPMELVDNQQLTEKLPPEILTEP 115

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L+         +   +  R+ A+L +L   G+R+SE + L   ++  D   +R+  
Sbjct: 116 EIKQLL-----AAPDQAHALGKRDRALLAVLATTGMRVSELVDLLVTDLHLDIKMIRLGS 170

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
            G + R+VP+     + + +Y       L    +  +F    G  L      + +R L R
Sbjct: 171 GGRRERLVPISDQAVQELKQYLAAVRPLLVAEGEQAVFVNAHGHQLTRQGVWKNLRTLVR 230

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+  + T  TLR+SFA HLL +G D R IQ +LG+  L   + Y  +  +     +  
Sbjct: 231 QAGIEKAVTPRTLRYSFAVHLLRSGADGRLIQEMLGYSELRAIKPYLKMTVQE----LSA 286

Query: 313 IYDQTHPSI 321
            Y Q  P I
Sbjct: 287 DYRQHQPKI 295


>gi|240145649|ref|ZP_04744250.1| integrase/recombinase XerD [Roseburia intestinalis L1-82]
 gi|257202271|gb|EEV00556.1| integrase/recombinase XerD [Roseburia intestinalis L1-82]
          Length = 218

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 11/227 (4%)

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +K+F  +L+K +         ++  K   ++PR L  ++   L++    +T  E +    
Sbjct: 1   MKAFFHFLEKERRIESDPAWRLKAPKIEKTMPRILTTEEVTFLLEQPSGNTPKELR---- 56

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
            + A+L LLY  G+R+SE +SL   ++      + I     K RI+P     R+A+  Y 
Sbjct: 57  -DKAMLELLYATGIRVSELISLKVSDLNLQMEYV-ICTDIHKERIIPFGNVAREALTRYM 114

Query: 215 DLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                 L      P LF    G  ++   F + I+   +  G+    T HTLRHSFA HL
Sbjct: 115 QDGRDHLISQADCPWLFTNCTGGAMSRQGFWKLIKFYGKKAGIESEITPHTLRHSFAAHL 174

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           +SNG DL+S+Q +LGH  +STTQIY    S+ G   + E+Y + HP 
Sbjct: 175 ISNGADLKSVQEMLGHSDISTTQIY----SQMGQGRIREVYLKAHPR 217


>gi|255994142|ref|ZP_05427277.1| integrase/recombinase XerD [Eubacterium saphenum ATCC 49989]
 gi|255993810|gb|EEU03899.1| integrase/recombinase XerD [Eubacterium saphenum ATCC 49989]
          Length = 298

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 73/312 (23%), Positives = 137/312 (43%), Gaps = 24/312 (7%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K+ +N+   LE +R LS  T+ +Y  D + F IF+         I+  +++  T+I  F+
Sbjct: 5   KDMKNFFVYLEKDRSLSTSTIGAYHEDLQAFHIFVYGK-----GIKGYKRVKNTDIDDFV 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
              + Q     +++R +S +++F  YL       ++  L ++  K +         ++  
Sbjct: 60  ENLKRQDYAPATIRRRISSVRAFYNYLVNTGAMRKNPTLGLKAPKLNKKTIDYFTVEEID 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L     L +  +      R+ A+L L+Y  GL+++E L L   ++      +    K  
Sbjct: 120 LL-----LASVTDDTDSGIRDKAVLELMYAAGLQLTELLELKMSDVDIRAGLITAGLKKR 174

Query: 196 KIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
             R++P+    RKA+ +Y               +   PLF     K  +     +  +  
Sbjct: 175 --RVIPIGSHARKAVEKYISDVRKLKFSKLSKKDASSPLFVNYLNKKFSRQGIWKIFKDY 232

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDW 309
               G+ +  T + LR+SFA H+L NG D++++Q ++GH  +S T Q Y  + S      
Sbjct: 233 AAKTGI-IKFTPNMLRNSFAVHMLQNGADIKTVQELMGHENISITKQYYIEIPSSTKL-- 289

Query: 310 MMEIYDQTHPSI 321
              +YD+THP  
Sbjct: 290 ---VYDKTHPRA 298


>gi|126642664|ref|YP_001085648.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC
           17978]
          Length = 233

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 73/238 (30%), Positives = 131/238 (55%), Gaps = 6/238 (2%)

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           ++R L+ I+ F+K+ ++ K    +   + +  ++   LP  ++ +    ++D  +     
Sbjct: 1   MQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIEMVNQILDQPMPEKPV 60

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
           + + +  R+ A+L LLY  GLR++E   LT ++I  ++  +RI GKG+K RIVP     +
Sbjct: 61  DQQ-LWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPFGKKAK 119

Query: 208 KAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           +++L +  +         Q   +F   RG  L P   ++ ++   +  G+ +    H LR
Sbjct: 120 ESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLHPHLLR 179

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           H FA+H+LS+ GDLRS+Q +LGH  LSTTQIYT+++     D + ++YDQ HP  T+ 
Sbjct: 180 HCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHLAQVYDQAHPRATKH 233


>gi|153954207|ref|YP_001394972.1| site-specific tyrosine recombinase XerC [Clostridium kluyveri DSM
           555]
 gi|146347088|gb|EDK33624.1| Predicted recombinase [Clostridium kluyveri DSM 555]
          Length = 328

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 89/330 (26%), Positives = 143/330 (43%), Gaps = 33/330 (10%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
             +L +I + EL     ++L  L   +G SK TL+ Y+ D   FL FL  Y   +     
Sbjct: 2   KYSLNQIYNPELPGYLNDFLNYLGTIKGKSKNTLEGYKVDLTMFLRFLKLYKGLEKEGSQ 61

Query: 63  IR-------------QLSYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKR 105
                          Q++ +++ AFIS     R  +        R ++ +KSF KYL  +
Sbjct: 62  FEKIKIKDIDIDIIKQITLSDLFAFISFIENYRHNKSYAR---ARKVASLKSFFKYLCSK 118

Query: 106 -KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLY 164
            K+ +E+  L + + + S   P           +    L           R+  I+    
Sbjct: 119 AKLISENPALELESPQISKRNP-------IYLSLKESKLLLESIDGKFKERDYCIITFFL 171

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL- 223
            CG+R+SE  S+   NI +D  TL + GKG+K R + L  S  +A+  Y       LN  
Sbjct: 172 NCGMRLSELCSINISNIKED--TLTVIGKGNKERTIYLNKSCLEALKNYLTSRDEYLNKI 229

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLR 281
             +  LF       +N    +  +++  +   L     T H LRH+ AT +   G  D+R
Sbjct: 230 KDKDALFISKNYARINKRSVEIMLKKYLKKANLDSEKYTPHKLRHTAATLMYKYGHVDIR 289

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           S+Q ILGH  +STTQIYT+V+ +   + + 
Sbjct: 290 SLQKILGHENVSTTQIYTHVDDERLREAIK 319


>gi|255534430|ref|YP_003094801.1| Integrase, site-specific recombinase [Flavobacteriaceae bacterium
           3519-10]
 gi|255340626|gb|ACU06739.1| Integrase, site-specific recombinase [Flavobacteriaceae bacterium
           3519-10]
          Length = 296

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 77/308 (25%), Positives = 135/308 (43%), Gaps = 15/308 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L+ + +E+  S  TL SY  D   F +FL         +    ++    IR F++ 
Sbjct: 2   VDRFLEYIAVEKRYSPHTLTSYRRDLEDFSVFLLRTEAHHNYV----EVDKKIIRNFMAA 57

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + I  RS+ R LS ++SF  +L K      S + N++ LK         +  +    
Sbjct: 58  LGEKAIAKRSINRKLSTLRSFYLFLLKIGEVKTSPLANIQTLKFYAEKQVPFSPDEM--- 114

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
             N L     +    +     I+  LY  G+R +E   L   ++   +  L+I GKG+K 
Sbjct: 115 --NDLQKEEFQPLKTNFLKELIIETLYQTGMRRAELTGLLLDHVDLGKKELKITGKGNKQ 172

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RIVP+   +   + +Y +          Q+  F   +GK LN       +      +   
Sbjct: 173 RIVPVSDDLCAQLEQYLEFRKPL--KEYQMYFFVSAKGKKLNDKFVYSAVNTYLSLVTSK 230

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRHSFATH+L  G ++  ++ ++GH  L++TQ+YT  N +     + ++++  
Sbjct: 231 KKKSPHILRHSFATHVLEEGAEISKVKLLMGHKSLASTQVYTGTNIEQ----LKKVFNNA 286

Query: 318 HPSITQKD 325
           HP   QK+
Sbjct: 287 HPRAIQKE 294


>gi|78356957|ref|YP_388406.1| integrase/recombinase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219362|gb|ABB38711.1| integrase/recombinase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 304

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 64/308 (20%), Positives = 121/308 (39%), Gaps = 13/308 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE----EKITIQTIRQ 65
              +L    + +   L  E G S  T+ +Y  D                  ++T+  + +
Sbjct: 6   ADLDLTGATEAFCARLSAE-GRSPATIAAYRRDLALVARVAGELAPGIVCREVTVGLLDE 64

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +        +++         SL R  + +++F  +  +  +  ++   ++R  +    L
Sbjct: 65  VFSA---GAVTESERGPRSAASLHRMKAAVRAFFAWAAETGVVGDNPARSIRMHRLPRKL 121

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P  L   +   L+          T +   R+ A++ +L G G+R+ E  +L   +I  D 
Sbjct: 122 PVFLTTAEKKRLLK----ELKGRTDFSTLRDRAMIEVLLGTGIRLGELTALDMDDIDLDA 177

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             LR++ KG+  ++  +   +R  +  Y           ++  LF   R   L       
Sbjct: 178 KHLRVRAKGNVPQVKFIKTDLRTLLRRYLAERRRHGRPEME-ALFLSNRDGRLCQRQIAN 236

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +    R  G+    T H LRH+FATHL     DL  +Q  LGH  +STTQIYT++    
Sbjct: 237 RLAHWLRKAGIEKELTPHGLRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQ 296

Query: 306 GGDWMMEI 313
             + +  +
Sbjct: 297 LEEALERL 304


>gi|187933384|ref|YP_001886557.1| tyrosine recombinase XerD [Clostridium botulinum B str. Eklund 17B]
 gi|187721537|gb|ACD22758.1| tyrosine recombinase XerD [Clostridium botulinum B str. Eklund 17B]
          Length = 292

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 74/308 (24%), Positives = 142/308 (46%), Gaps = 16/308 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++    N+ + L  + G S+ T+ +Y  D   +L FL    ++ I +    +L+   + A
Sbjct: 1   MVDSINNYKEYL-FDSGKSENTIYAYVTDVTLYLKFL---DKKGIDVYKSDKLT---VMA 53

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +I         +RS+ R +  ++SF  YLK + +  E   +  ++ K +  LP+ L   +
Sbjct: 54  YIQYLLESGKSERSINRIVISLRSFYSYLKSQSLINEVPKIEYKSSKNNRKLPQILTVDE 113

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++      T  +      R++A+L L+Y  G+++SE +SL   +I  +   +R    
Sbjct: 114 VDKII-----RTVEKDCPKGIRDNALLELMYATGMKVSELISLNVDDINLELHFVRCTDS 168

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            +  R++P+  S  +A+ EY  +        +   LF  + G  L      R +++  + 
Sbjct: 169 RNFERLIPIGRSACRALNEYLSIRYKIAECGVPN-LFVNLNGNKLTRQGIWRIVKEYSKR 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +      +T RHSFA HLL NG ++R++Q +LG+  L+    Y  + +    D +  I
Sbjct: 228 AHIDKDVNLNTFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTYYEIIN---NDKINFI 284

Query: 314 YDQTHPSI 321
           Y  THP  
Sbjct: 285 YMNTHPRA 292


>gi|327395064|dbj|BAK12486.1| tyrosine recombinase XerD [Pantoea ananatis AJ13355]
          Length = 220

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 113/229 (49%), Gaps = 11/229 (4%)

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           ++   +YL + K+ T+     +   K    LP+ L+E Q   L+             ++ 
Sbjct: 1   MRRLFQYLYREKMRTDDPSAMLAAPKLPQRLPKDLSEAQVDRLL-----QAPDVNVPLEL 55

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A+L LLY  GLR+SE + LT  ++   Q  +R+ GKG+K R+VPL       +  Y 
Sbjct: 56  RDKAMLELLYATGLRVSELVGLTLNDVSLRQGVVRVIGKGNKERLVPLGEEAVHWLEYYM 115

Query: 215 -DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATH 272
               P+ LN       F   R + +    F   I+      G+     + H LRH+FATH
Sbjct: 116 EHGRPWLLNGQTLDVFFPSNRAQQMTRQTFWHRIKHYAMLAGIDSEKLSPHVLRHAFATH 175

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           LL++G DLR +Q +LGH  LSTTQIYT+V ++     +  ++ Q HP  
Sbjct: 176 LLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRLLHQQHHPRA 220


>gi|163815939|ref|ZP_02207309.1| hypothetical protein COPEUT_02119 [Coprococcus eutactus ATCC 27759]
 gi|158448749|gb|EDP25744.1| hypothetical protein COPEUT_02119 [Coprococcus eutactus ATCC 27759]
          Length = 306

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 75/308 (24%), Positives = 141/308 (45%), Gaps = 19/308 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +N+L+    ++ L + TL++Y+ D +QF  +L            I  +S + +  +I +
Sbjct: 8   IKNYLEYCGKQKCLDEKTLKAYKIDLKQFSDYLCS--------SDITNVSTSILEDYIGE 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALT 136
               K   +++KR ++  K+F  YL+ ++I   +    ++   ++   LP+ +      T
Sbjct: 60  LH-NKYKPKTVKRKIASAKAFFHYLEYKEILDRNPFNKLQIKFREPVILPKTIPLHTVET 118

Query: 137 LV----DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           ++    + +    +   +    R++A++ LL+  G+RISE  +L   +I     ++ I G
Sbjct: 119 ILSTIYEQLNCAKTIYQRRNSLRDAAVIELLFATGMRISELCALKVNDINLYDGSILIYG 178

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KGDK R + +      +IL  Y++  F   +      F    G+ L     +R I +   
Sbjct: 179 KGDKERRLQIGNPSVISILNKYEV-DFHSEIMNCNHFFANQSGRSLTDQTVRRMINKYTA 237

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              + L  T H  RH+FAT LL    D+R IQ +LGH  ++ T+IYT+V        +  
Sbjct: 238 LAAIDLHITPHMFRHTFATSLLEADVDIRYIQEMLGHSSINITEIYTHVALAKQRSILA- 296

Query: 313 IYDQTHPS 320
                HP 
Sbjct: 297 ---TKHPR 301


>gi|301312479|ref|ZP_07218393.1| tyrosine recombinase XerD [Bacteroides sp. 20_3]
 gi|300829545|gb|EFK60201.1| tyrosine recombinase XerD [Bacteroides sp. 20_3]
          Length = 314

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 75/311 (24%), Positives = 135/311 (43%), Gaps = 24/311 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L + + E+ L++ T+ +Y  D   F      Y  E        Q+S   ++ ++    
Sbjct: 15  DFLFHCQYEKNLNEKTIYAYRSDLYMF----NRYIHELYPSVVFEQVSKDMLKTYLQHIS 70

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLV 138
           T     +++KR L+ +K+   Y         +    +R   K+   LP  +   +   ++
Sbjct: 71  T--YKPKTVKRKLASLKALFNYYDFEHDDFLNPFRKLRIRFKEPYVLPTVMTCNEVKEIL 128

Query: 139 DN-VLLHTSHETKWIDAR-----NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
                L   +      A      + A++ LL+  G+R+SE   L+   +   Q+T+++ G
Sbjct: 129 KYLYKLRADNPDTGGYAYKAQTRDIAVVELLFATGIRVSELCELSCDAVDLKQATIKVFG 188

Query: 193 KGDKIRIVPLLP-SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG K R++ +    V K + +Y  L             F    G  L+    +  I++ R
Sbjct: 189 KGSKERVIQICSVEVLKILRQYQRL------FAPSKCFFINRLGNRLSSQSVRLLIKRCR 242

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             +G+    T HT RH+FAT LL    D++ IQ++LGH  ++TTQIYT+VN         
Sbjct: 243 EEIGIGKKITPHTFRHTFATLLLEEDVDIKYIQNLLGHSSITTTQIYTHVNMNKQ----K 298

Query: 312 EIYDQTHPSIT 322
           +I    HP   
Sbjct: 299 KILSSKHPRKK 309


>gi|307293405|ref|ZP_07573251.1| integrase family protein [Sphingobium chlorophenolicum L-1]
 gi|306881471|gb|EFN12687.1| integrase family protein [Sphingobium chlorophenolicum L-1]
          Length = 305

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 84/306 (27%), Positives = 143/306 (46%), Gaps = 22/306 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L+ +  ERG S+ TL +Y  D       +   +    T   I  L+          
Sbjct: 8   IDRFLEMMAAERGASRNTLLAYRADLTGAGEIVGGLSG--ATKDRIADLTMAWAE----- 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +   S+ R  S +++F  +L++  +  ++    +       SLP+ L+ ++  +L
Sbjct: 61  -----LAASSVARKSSALRAFYAFLEEEGLRPDNPSAALPRPVTRRSLPKILSTQEVDSL 115

Query: 138 VDNVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
              +    + E    +D R SA++ LLYG GLR +E +SL  + +  D+  L ++GKG +
Sbjct: 116 FALIAGKLAVEHPSPLDLRLSALIELLYGSGLRATELVSLPRRALASDRPFLILKGKGGR 175

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+VP+    R A+  +    P D      L LF   +       ++Q            
Sbjct: 176 ERLVPISDRARAAVAVWLHHVPAD-----SLWLFPSGKSHVSRIRLYQMVKALAAAAGIA 230

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           P   + H LRH+FATHLL  G DLR++QS+LGH  + TTQIYT+V+S+     ++E+ + 
Sbjct: 231 PERVSPHVLRHAFATHLLEGGADLRALQSMLGHADIGTTQIYTHVDSRR----LVELVNS 286

Query: 317 THPSIT 322
            HP  +
Sbjct: 287 RHPLAS 292


>gi|320535370|ref|ZP_08035484.1| putative site-specific tyrosine recombinase XerD [Treponema
           phagedenis F0421]
 gi|320147772|gb|EFW39274.1| putative site-specific tyrosine recombinase XerD [Treponema
           phagedenis F0421]
          Length = 255

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 76/262 (29%), Positives = 136/262 (51%), Gaps = 21/262 (8%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           FI  R    I  ++  + ++ + SF ++L    +  ++   N+   ++  +LPR L+ ++
Sbjct: 3   FIISRSEAGIMGKTTAKDIAALNSFYRFLILENVRQDNPAENIEAPRREKNLPRVLSPEE 62

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D++ L++ +       R+ A+  L+Y  GLR+SE + L+ ++I  D+  L++ GK
Sbjct: 63  VDLLLDSIPLNSPN-----GIRDRALFELIYSAGLRVSEVVGLSLEDIFFDEQLLKVTGK 117

Query: 194 GDKIRIVPLLPSVRKAILEYYDLC-------PFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           G K RIVP     ++ +  Y D          +  N   +  +F    GK L+     + 
Sbjct: 118 GSKERIVPFGKQAKQQLQNYIDGARKAFIKPQYTENTETRGAVFLNKNGKRLSRKGIWKR 177

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           ++++    G+      HTLRHS+ATHLL+ G DLRS+Q +LGH  +STTQIYT++ +   
Sbjct: 178 LQEIEVISGINTKV--HTLRHSYATHLLAGGADLRSVQCLLGHADISTTQIYTHIETDEL 235

Query: 307 GDWMMEIYDQTHPSITQKDKKN 328
             +  E +       T+K+K N
Sbjct: 236 EMYHKEFF-------TEKEKTN 250


>gi|251780259|ref|ZP_04823179.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243084574|gb|EES50464.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 329

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 89/318 (27%), Positives = 147/318 (46%), Gaps = 26/318 (8%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE---------EKITIQTI 63
           +L     ++L  LE  +  S  T+ +Y+ D   F  F+  Y           E I I  I
Sbjct: 12  DLPDSVLDFLNYLETIKNKSSNTIAAYKKDLTIFFRFMKLYRGIVKDKKIEFEDIDITDI 71

Query: 64  RQ-----LSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNM 116
                  +   ++ AF+S   + +     +  R ++ +KS+ K+L+ + KI  ++    +
Sbjct: 72  NDEFLKSIKLRDLYAFMSFIEKYRNNSAYARARKVATLKSYFKFLQGKAKIIVDNPTTEL 131

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
            + K +   P  L   Q++      LL +  +     AR+  IL L   CG+R+SE   +
Sbjct: 132 ESPKINKRQPVYLTLDQSI-----HLLSSLDKNNKNYARDYCILTLFLNCGMRLSELCGI 186

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIRG 235
           + + I +D   L I GKG+K R V L  +  K+I  Y  +      L   +  LF     
Sbjct: 187 SIEKIRND--ILVIIGKGNKERTVYLNEACLKSIENYMRIRDDSKALPEYKKFLFLSSHN 244

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLS 293
           KP+N    +  I++  +  GL     T H LRH+ AT +   G  D+RS+Q+ILGH  +S
Sbjct: 245 KPINQRTVEIMIKKHIKNAGLTDGKYTPHKLRHTAATLMYKYGDVDIRSLQNILGHENIS 304

Query: 294 TTQIYTNVNSKNGGDWMM 311
           TTQIYT+V++    D + 
Sbjct: 305 TTQIYTHVDNDTLRDAVK 322


>gi|300088762|ref|YP_003759284.1| integrase family protein [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299528495|gb|ADJ26963.1| integrase family protein [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 304

 Score =  202 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 66/309 (21%), Positives = 120/309 (38%), Gaps = 13/309 (4%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE----EKITIQTIR 64
           +   +L    + +   L  E G S  T+ +Y  D           T       +T   + 
Sbjct: 5   MADLDLTGATEAFCARLSAE-GRSPATISAYRRDLALVARVAGELTPGIVCRAVTAGLLD 63

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           Q+        + +         SL R  + +++F  +  +  +  ++   ++R  +    
Sbjct: 64  QVFSA---GAVIESVRGPRSAASLHRMKAAVRAFFAWASEAGVVDDNPARSIRMHRLPRK 120

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   +   L+          T +   R+ A++ +L G G+R+ E  +L   +I  D
Sbjct: 121 LPVFLTAAEKKRLLK----ELKGRTDFFALRDRAMIEVLLGTGIRLGELAALDMDDIDLD 176

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
              LR++ KG+  ++  +   +R  +  Y           ++  LF   R   L      
Sbjct: 177 AKHLRVRAKGNVPQVNFIKTDLRTLLRRYLAERRRHGRPEME-ALFLSNRDGRLCQRQIA 235

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +    R  G+    T H LRH+FATHL     DL  +Q  LGH  +STTQIYT++   
Sbjct: 236 NRLAHWLRKAGIEKELTPHGLRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDG 295

Query: 305 NGGDWMMEI 313
              + +  +
Sbjct: 296 QLEEALERL 304


>gi|310658549|ref|YP_003936270.1| site-specific tyrosine recombinase xerc [Clostridium sticklandii
           DSM 519]
 gi|308825327|emb|CBH21365.1| putative site-specific tyrosine recombinase XerC [Clostridium
           sticklandii]
          Length = 308

 Score =  202 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 85/310 (27%), Positives = 150/310 (48%), Gaps = 22/310 (7%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+    +L  + +ER  SK T+ SY  D R     L  Y +E+    +I  L+   IR F
Sbjct: 12  LEYFDEFLAYMTVERNASKFTISSYTSDFR----ILEEYLKERNMKVSIETLNVATIRTF 67

Query: 75  ISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKIT--TESNILNMRNLKKSNSLPRALNE 131
           I   R +K   + +++R +  + SF K+L + +     ++ +  +R  KK   LP  L+E
Sbjct: 68  IHFLRLEKEYTNETIRRKIYALGSFFKFLVENEYIGMDKNPMSKIRAPKKEEKLPIYLSE 127

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI- 190
           K+  TL+D ++     +      R+ AI+ L    GLR  E ++L  +++   Q T+++ 
Sbjct: 128 KEIRTLLDTIMKTGGKD----AIRDKAIISLFAMTGLRRMELINLNWEDVDFGQKTIKVT 183

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG K RI+P+  ++ + +L Y +      N      LF     K +N        ++ 
Sbjct: 184 MGKGKKQRILPMPETLYQDLLAYMNNSLPITNT----ALFITSNNKRVNFRGMNNLFQKY 239

Query: 251 RRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            +  GL     T H LRHS+A+ L+  G D+  ++ ++GH   ++T+IY ++N  N  D 
Sbjct: 240 IKRAGLSGKGYTLHKLRHSYASLLVQQGVDISIVKELMGHSDFNSTKIYVHLNMNNLRDS 299

Query: 310 MMEIYDQTHP 319
           + +     HP
Sbjct: 300 VDK-----HP 304


>gi|187934306|ref|YP_001886003.1| site-specific tyrosine recombinase XerC [Clostridium botulinum B
           str. Eklund 17B]
 gi|187722459|gb|ACD23680.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum B str. Eklund 17B]
          Length = 329

 Score =  202 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 89/318 (27%), Positives = 148/318 (46%), Gaps = 26/318 (8%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE--------------EKI 58
           +L     ++L  LE  +  S  T+ +Y+ D   F  F+  Y                  I
Sbjct: 12  DLPNSVIDFLNYLETIKNKSTNTIAAYKKDLTIFFRFMKLYRGLIKEKNTEFEEIDIRDI 71

Query: 59  TIQTIRQLSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNM 116
               ++ +   ++ AF+S   + +     +  R ++ +KSF K+L+ + KI  ++  + +
Sbjct: 72  DDDFLKSIKLRDLYAFMSFIEKYRNNSAYARARKVATLKSFFKFLQGKAKIIVDNPTIEL 131

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
            + K +   P  L   Q++      LL++  ++    AR+  IL L   CG+R+SE   +
Sbjct: 132 ESPKINKRQPVYLTLDQSI-----HLLNSLDQSNKNYARDYCILILFLNCGMRLSELCGI 186

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIRG 235
           + + I DD   L I GKG+K R V L  +  KAI  Y  +      L   +  LF     
Sbjct: 187 SIEKIRDD--ILTIIGKGNKERTVYLNAACLKAIENYMRIRDDSKALPENKKFLFLSSHN 244

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLS 293
           KP+N    +  I++  +  GL     T H LRH+ AT +   G  D+RS+Q+ILGH  +S
Sbjct: 245 KPINQRTVEIMIKKHIKNAGLTDGKYTPHKLRHTAATLMYKYGEVDIRSLQNILGHENIS 304

Query: 294 TTQIYTNVNSKNGGDWMM 311
           TTQIYT+V+     D + 
Sbjct: 305 TTQIYTHVDDDTLRDAVK 322


>gi|160934246|ref|ZP_02081633.1| hypothetical protein CLOLEP_03117 [Clostridium leptum DSM 753]
 gi|156866919|gb|EDO60291.1| hypothetical protein CLOLEP_03117 [Clostridium leptum DSM 753]
          Length = 314

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 149/304 (49%), Gaps = 29/304 (9%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTE-------------EKITIQTIRQLSYTEI 71
           +E  +G S  T+Q Y  D R F  ++                  + ITI  +  +S T++
Sbjct: 1   METIKGKSPKTVQEYFFDLRTFFRYMKIKKNLTAADTEFSEIPIDDITIDFLSMVSLTDV 60

Query: 72  RAFISK---RRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKSNSLPR 127
             F++     R  K   R   R  + +++F +YL  +     E+ +  +   K+  SLP+
Sbjct: 61  YEFMNFVTIERENKNAAR--ARKSASLRAFFQYLTNKTHQLKENPVQELETPKQKKSLPK 118

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L  +Q++ L++ V             R+  IL L   CGLR++E + L   +I  D  T
Sbjct: 119 YLTLEQSIDLLNAV-------DGPFRERDYCILTLFLNCGLRLAELVGLNLNDIRPDH-T 170

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           +R+ GKG+K R++ L  + +KAI EY  + P  ++++ +  LF     K L     Q  +
Sbjct: 171 MRVTGKGNKERMIYLNSACQKAIEEYLKVRPNPMSVSDKKALFISHLNKRLGRQAVQNIV 230

Query: 248 RQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           ++  + +GL     +AH LRH+ AT +  +G  D+R ++ ILGH  L TT+IYT+++++ 
Sbjct: 231 QKYLKKIGLDGQGYSAHKLRHTAATLMYQHGNVDIRVLKDILGHQNLGTTEIYTHLSNQQ 290

Query: 306 GGDW 309
             D 
Sbjct: 291 MEDA 294


>gi|319936094|ref|ZP_08010516.1| hypothetical protein HMPREF9488_01347 [Coprobacillus sp. 29_1]
 gi|319808881|gb|EFW05399.1| hypothetical protein HMPREF9488_01347 [Coprobacillus sp. 29_1]
          Length = 301

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 78/297 (26%), Positives = 141/297 (47%), Gaps = 15/297 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  +N+L   + ++ L+  TL++Y  D  QF  ++ F   +          +  +I  +I
Sbjct: 4   KHVENYLNYCQYQKRLTGKTLKAYRIDLNQFYTYMQFKNLK----------NKKDISVYI 53

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQA 134
            +  T     R++KR ++ IK+F  YL+K+    E+    +    K+   LP+ +   + 
Sbjct: 54  QQLHT-TYKPRTVKRKIAAIKAFYTYLEKQDFLKENPFHKIDYRFKEPIRLPKTITLHEL 112

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L  ++  ++   +  +  R+ AIL LL   G+R+SE   L   N+   ++T+ I GKG
Sbjct: 113 NHLYQSLYAYSKQTSNRVITRDIAILELLICTGIRVSEVSHLLKSNVFIRENTIIINGKG 172

Query: 195 DKIRIVPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            K RI+ +   ++ +++L Y     F   +      F    G  L+    +  I +    
Sbjct: 173 SKERIIYIDNQNLIQSLLSY--QRLFQDEIEKSPYFFINRLGHHLSEQSIRFMIVKYCHL 230

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
             +    T H  RH+FAT +L    D+R IQ ILGH  ++TTQIYT++++    + M
Sbjct: 231 FHIDSHITPHMFRHTFATMMLEEDVDIRYIQEILGHSSITTTQIYTHMSAHKQKEIM 287


>gi|110802806|ref|YP_698501.1| site-specific tyrosine recombinase XerC [Clostridium perfringens
           SM101]
 gi|110683307|gb|ABG86677.1| site-specific recombinase, phage integrase family [Clostridium
           perfringens SM101]
          Length = 450

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 84/312 (26%), Positives = 146/312 (46%), Gaps = 27/312 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE----------EKITIQT-----IR 64
            +L  LE  +G S  T + Y  D   F  FL  Y            E++ I       I+
Sbjct: 138 EFLNYLENVKGKSLNTAKGYSVDLGLFFKFLKVYKGLENNIELEKIEEVEISDLGDNFIK 197

Query: 65  QLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKS 122
            ++ ++I AF++   + +     +  R ++ +KSF K+L  + K+  E+  + + + K +
Sbjct: 198 DITLSDIYAFLAFLEKVRNNSAYARARKVATLKSFFKFLNSKIKLIDENPTVELESPKIN 257

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
              P  L   Q++T+++++     +++     R+  IL L   CG+R+SE  ++  + I 
Sbjct: 258 KRHPVYLTLDQSITVLNSM-----NKSNKNYYRDYCILTLFLNCGMRLSELCNIEIEKIK 312

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPG 241
            D  TL I GKG+K R V L  +   AI  Y             +  LF   + +P+N  
Sbjct: 313 GD--TLTIIGKGNKERTVYLNEASIAAIENYLKNRNDSKATEEAKKYLFLSSKYRPINKR 370

Query: 242 VFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYT 299
             +  +++     G      T H LRH+ AT +   G  D+RS+Q+ILGH  +STTQIYT
Sbjct: 371 SVEILVKKHIENAGFKDQKYTPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQIYT 430

Query: 300 NVNSKNGGDWMM 311
           +V+ +     + 
Sbjct: 431 HVDDETLRKAVK 442


>gi|317153308|ref|YP_004121356.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316943559|gb|ADU62610.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 304

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 68/308 (22%), Positives = 120/308 (38%), Gaps = 13/308 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE----EKITIQTIRQ 65
              +L    + +  +L  E G S  T+ +Y  D                  +IT   + Q
Sbjct: 6   ADLDLAGATEAFCASLSAE-GRSPATIAAYRRDLALLARVAEKLAAGIICREITPGLLDQ 64

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +  +E    ++          SL R  + +++F  +     I  ++   ++R  +    L
Sbjct: 65  VFSSEA---VADSERGPRSAASLHRMKAALRAFFAWAIDVGIVDDNPARSIRMHRLPRKL 121

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P  L   +   L    L      T +   R+ A++ +L G G+R+ E  +L   +I  D 
Sbjct: 122 PVFLTVGEKKRL----LKELKGRTDFPAFRDRAMIEVLLGTGIRLGELAALDMDDIDLDA 177

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             LR+  KG+  ++  +   +R  +  Y           ++  LF   R   L       
Sbjct: 178 KHLRVWAKGNVPQVKFIKTDLRTLLRRYLAERRRRGRPEME-ALFLSNRDSRLCQRQIAN 236

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +    R  G+    T H +RH+FATHL     DL  +Q  LGH  +STTQIYT++    
Sbjct: 237 RLAHWLRKAGIEKELTPHGMRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQ 296

Query: 306 GGDWMMEI 313
             + +  +
Sbjct: 297 LEEALERL 304


>gi|332158066|ref|YP_004423345.1| integrase/recombinase [Pyrococcus sp. NA2]
 gi|331033529|gb|AEC51341.1| integrase/recombinase [Pyrococcus sp. NA2]
          Length = 279

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 80/300 (26%), Positives = 139/300 (46%), Gaps = 40/300 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   LE+E G SK T++ Y     +FL       EE  +       +  +   F+++
Sbjct: 6   IEEFATYLELE-GKSKNTIRMYTYYLSKFL-------EEGYSP------TARDALRFLAR 51

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            + +    RS+   +  +K++ K+     + TE     ++  K   +LPR+L E++   +
Sbjct: 52  LKKKGYSIRSINLIVHALKAYFKF---EGLETE--AEKLKTPKIPKTLPRSLTEEEIKKV 106

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDK 196
           ++            +           YG GLR+SE  +L  +++  ++  L ++G KG K
Sbjct: 107 IEAAKNLRDRLILLLL----------YGAGLRVSELCNLKIEDVNFEKGFLIVRGGKGGK 156

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG---KPLNPGVFQRYIRQLRRY 253
            RI+PL  ++ + I  Y          +    LF  IR      L+P      +++    
Sbjct: 157 DRIIPLSETLLQEIQRYLKTR-----KDNSPYLFVEIRRGKKDKLSPKTVWWIVKKYGEE 211

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+  + T H LRHSFATH+L  G D+R IQ +LGH  LSTTQIYT V +K+  + + + 
Sbjct: 212 AGI--NLTPHQLRHSFATHMLERGIDIRIIQELLGHASLSTTQIYTKVTTKHLKEAVEKA 269


>gi|258616485|ref|ZP_05714255.1| phage integrase family site specific recombinase [Enterococcus
           faecium DO]
          Length = 225

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 80/234 (34%), Positives = 121/234 (51%), Gaps = 12/234 (5%)

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            ++ ++SF +YL K ++  E+    +   KK+  LPR   E +   L D+V   +     
Sbjct: 1   KIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQALFDSVAGDSP---- 56

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
            +D RN A+L +LYG G+R+SE  SL+  +I  D   + I GKG+K R  PL    + A+
Sbjct: 57  -LDLRNRALLEVLYGSGIRLSECSSLSVSDIDFDSEVMLIHGKGNKERYAPLGSFAQDAL 115

Query: 211 LEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
            EY+      L          +F    GKP+ P   +  + Q+ +   L      H LRH
Sbjct: 116 QEYFREGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQMIKKSSLDSDIHPHMLRH 175

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           +FATHLL+NG DLR++Q +LGH  LSTTQIY +V  ++    + + Y   HP  
Sbjct: 176 TFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKES----LQKNYRSFHPRA 225


>gi|306519780|ref|ZP_07406127.1| putative tyrosine recombinase [Clostridium difficile QCD-32g58]
          Length = 290

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 61/294 (20%), Positives = 131/294 (44%), Gaps = 12/294 (4%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +   + ++  ++ ++ LS+ T+ SY  D ++++ ++   + + + I         +I ++
Sbjct: 1   MDIIEGYIDYIKDKKKLSENTVASYFMDIKKYMEYINQKSIKLVDIVE------NDIISY 54

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + K     +   ++ R +S IKSF  YL    I T +   +++  K        L E++ 
Sbjct: 55  LIKLEKDNVSIATIARMISSIKSFHDYLFLNHICTNNPAKDIKKPKIKKENINILTEEEI 114

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L++   L T    +     + AI  +LYG G+++SE + +  ++I  D   +      
Sbjct: 115 ERLLNFPKLTTPKLIR-----DKAIFEVLYGTGIKVSELVEMNIEDIDLDIDYIYCNSCC 169

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
              R++PL    +  + +Y       + +  +  LF    G+        + I++     
Sbjct: 170 KNQRVIPLCDITKLYLEKYLKEARPKMAVEGEKSLFVSSLGQRFTRQGLWKVIKKYSNLA 229

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT-NVNSKNGG 307
            +  +     LRHSFA HLL+ G ++  +  ILG+  LS+ Q+Y  +++ K   
Sbjct: 230 NIDKNINPTMLRHSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDKKREK 283


>gi|227499531|ref|ZP_03929638.1| possible tyrosine recombinase XerC [Anaerococcus tetradius ATCC
           35098]
 gi|227218410|gb|EEI83661.1| possible tyrosine recombinase XerC [Anaerococcus tetradius ATCC
           35098]
          Length = 329

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 82/329 (24%), Positives = 154/329 (46%), Gaps = 30/329 (9%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT---------EE 56
           + EI+S  +L    ++L  L+  RGLS  T++ Y  D    + F+             +E
Sbjct: 1   MKEIISPIILT---DYLNYLKSIRGLSSNTIREYNYDLNLMIRFMLVRKIYYGDFERFDE 57

Query: 57  KITIQTIRQ---------LSYTEIRAFISKRRTQKIG-DRSLKRSLSGIKSFLKYLKKR- 105
           +   ++I +         LS  +  +++S     K     +  R +S I+SF KYL    
Sbjct: 58  QFDPESINKIVDPKFFETLSLQDFYSYLSYLDNDKSDLASTRSRKISAIRSFYKYLFSEI 117

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
           ++   +    + N K S   P  L  ++   L++ V      + +++  R+ AI++    
Sbjct: 118 EVIDTNISDKLTNPKISQRQPVYLTLQETEKLLETV---KGEQNEFLKCRDLAIIFTFLT 174

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
            G+R+SE +S+  ++I +D     I GKG+K R + L  +    I +Y ++    +    
Sbjct: 175 TGMRLSELVSVNLRDISNDH--FNIIGKGNKERTIYLTSNCIDLIEKYIEVRGKYVKNID 232

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNG-GDLRSI 283
              LF   R K ++    Q  I +  +  G  +S  + H LRH+ AT +   G  D+R++
Sbjct: 233 IDALFISTRKKRISNRAVQSTIDKYLKKAGFDVSVYSTHKLRHTAATLMYKYGNVDIRAL 292

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           + ILGH  +STTQIYT+++ ++  + + +
Sbjct: 293 KDILGHANVSTTQIYTHLDDEDLKNAVNK 321


>gi|78355959|ref|YP_387408.1| integrase/recombinase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218364|gb|ABB37713.1| integrase/recombinase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 304

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 69/309 (22%), Positives = 125/309 (40%), Gaps = 15/309 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
              +L    + +   L  E G S  T+ +Y  D       +A   +E       R ++  
Sbjct: 6   ADLDLTGATEAFCARLSAE-GRSPATIAAYRRDL----ALVARVADELAPGIICRAITAG 60

Query: 70  EI-RAF----ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            + RAF    +++         SL R  + +++F  +  +  +  ++   ++R  +    
Sbjct: 61  LLDRAFSAGAVTESGRGPRSAASLHRMKAAVRAFFAWASEAGVVDDNPARSIRMHRLPRK 120

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   +   L+          T +   R+ A++ +L G G+R+ E  +L   +I  D
Sbjct: 121 LPVFLTTAEKKRLLK----ELKGRTDFSALRDRAMIEVLLGTGIRLGELAALDMDDIDLD 176

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
              LR++ KG+  ++  +   +R  +  Y           ++  LF   R   L      
Sbjct: 177 AKHLRVRAKGNVPQVKFIKTDLRTLLRRYLAERRRHGRPEME-ALFLSNRDGRLCQRQIA 235

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +    R  G+    T H LRH+FATHL     DL  +Q  LGH  +STTQIYT++   
Sbjct: 236 NRLAHWLRKAGIEKELTPHGLRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDG 295

Query: 305 NGGDWMMEI 313
              + +  +
Sbjct: 296 QLEEALERL 304


>gi|327440195|dbj|BAK16560.1| integrase [Solibacillus silvestris StLB046]
          Length = 313

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 85/314 (27%), Positives = 142/314 (45%), Gaps = 24/314 (7%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE------------KITI 60
           +L K  +++L  L    G S+ T + YE D   F+ FL    E+             ITI
Sbjct: 2   QLPKFLRDFLIYLTTITGKSQRTRKEYEYDLILFMRFLKAIEEDIPLDRLHTIDISTITI 61

Query: 61  QTIRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLK-KRKITTESNILNMRN 118
             I+++S  ++  F+     Q      +  R ++ +KSF KYLK KR++  E+   ++  
Sbjct: 62  DQIKEVSLEDLYLFMEYCEVQRGNSSSARARKVATLKSFFKYLKGKRRLIDENPAEHLET 121

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            K     P  LN  +A   +  V      +T+   AR+  ++      G+R+SE  SL  
Sbjct: 122 PKIGRRQPVYLNYNEAKDFIGAV------QTQSYSARDECMMVFFLNLGIRVSELCSLNI 175

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
            +I      L + GKG+K R V L  +   A+ +Y          + + PLF   +G   
Sbjct: 176 DSIN--GRMLTVIGKGNKERHVYLNDACMNALDKYLQERH-AYKGDGKEPLFISQKGTRF 232

Query: 239 NPGVFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
                 R ++ +      P    T H LRH+ AT +  +G D+R++Q ILGH  ++TTQI
Sbjct: 233 ARQSIARIVKVINANSHSPKEKLTPHKLRHTSATMMYKSGADIRTLQHILGHSSVATTQI 292

Query: 298 YTNVNSKNGGDWMM 311
           YT++  +   + + 
Sbjct: 293 YTHIEDEQIQEVLK 306


>gi|16082303|ref|NP_394769.1| site-specific integrase/recombinase XerD related protein
           [Thermoplasma acidophilum DSM 1728]
 gi|10640657|emb|CAC12435.1| site-specific integrase/recombinase XerD related protein
           [Thermoplasma acidophilum]
          Length = 283

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 89/312 (28%), Positives = 144/312 (46%), Gaps = 31/312 (9%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +  E  +    +++ +  ER  S+ T++ Y     QFL F+    +E      I  +   
Sbjct: 1   MPAETNEYLSRFVEYMTGER-KSRYTIKEYRFLVDQFLSFMNKKPDE------ITPMDIE 53

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
             + F++    ++    S   ++  +K F K L  R        +N+   K+ + +P  L
Sbjct: 54  RYKNFLA--VKKRYSKTSQYLAIKAVKLFYKALDLR------VPINLTPPKRPSHMPVYL 105

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +E +A  L++             D R  AI+ +L   G+R+ E  +L   ++   +S + 
Sbjct: 106 SEDEAKRLIEA---------ASSDTRMYAIVSVLAYTGVRVGELCNLKISDVDLQESIIN 156

Query: 190 IQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           ++ GKGDK RIV +     KA+  Y DL       N    LF   R    +    +R IR
Sbjct: 157 VRSGKGDKDRIVIMAEECVKALGSYLDLRLSMDTDN--DYLFVSNRRVRFDTSTIERMIR 214

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            L +  G+    T H LRH+FAT +L NGGD+R IQ ILGH  ++TTQIYT++N      
Sbjct: 215 DLGKKAGIQKKVTPHVLRHTFATSVLRNGGDIRFIQQILGHASVATTQIYTHLND----S 270

Query: 309 WMMEIYDQTHPS 320
            + E+Y Q  P 
Sbjct: 271 ALREMYTQHRPR 282


>gi|84490143|ref|YP_448375.1| site-specific recombinase/integrase [Methanosphaera stadtmanae DSM
           3091]
 gi|84373462|gb|ABC57732.1| predicted site-specific recombinase/integrase [Methanosphaera
           stadtmanae DSM 3091]
          Length = 316

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 89/309 (28%), Positives = 143/309 (46%), Gaps = 26/309 (8%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
              + ++++  ++I+ G S  TL++Y+     F  F+    + K     +R       + 
Sbjct: 11  FEDQVEDYILEMDIQ-GYSSNTLKTYKSILDNFYKFILSDRKIKDEKGMLRAF-----KR 64

Query: 74  FISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           ++   + +K +    +      +K F ++ +            ++  K++ SLP++LNE+
Sbjct: 65  YLQYLKREKEVSTNYIYLVTVVLKKFFEFAEIHIY------EEIKAPKRTKSLPKSLNEQ 118

Query: 133 QALTLVDNVLLHTSHETKWID----ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           +   L+         E          RN  IL LLY  GLR+SE   L    I +++ T+
Sbjct: 119 EVYDLIHAKDNEYDPEKTNPQNITRLRNKLILTLLYSTGLRVSELTKLKVTTIDENERTI 178

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R++GKGDK RIV         I EY D    +        LF   R   L+    Q  I+
Sbjct: 179 RVRGKGDKDRIVIFDEDTLDLIHEYLDKRGVE-----NEYLFVNQRNTSLSSRYIQLMIK 233

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +  +  G+    T H LRHSFATHLL NG D+R+IQ +LGH  LSTTQIYT+V+      
Sbjct: 234 EYAKDAGITRRVTPHILRHSFATHLLKNGVDIRAIQQLLGHSNLSTTQIYTSVD----MH 289

Query: 309 WMMEIYDQT 317
            +  +YD  
Sbjct: 290 TLKNVYDDA 298


>gi|238063317|ref|ZP_04608026.1| phage integrase [Micromonospora sp. ATCC 39149]
 gi|237885128|gb|EEP73956.1| phage integrase [Micromonospora sp. ATCC 39149]
          Length = 340

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 82/344 (23%), Positives = 143/344 (41%), Gaps = 34/344 (9%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           +       +   + +   ++  +L   R  S  T+++Y  D    L   A     ++   
Sbjct: 7   DTKATHAALPASMREAVDDFADHLARVRNRSAHTVRAYVGDLVSLLDHAA-----RMGCT 61

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            +  L    +R++++K+RT      ++ R  +  ++F  +  +  +        + + + 
Sbjct: 62  AVADLDLGMVRSWLAKQRTTGAARTTMARRAAAARAFSAWAHRAGLVPTDVAAPLASPRA 121

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETK-WIDARNSAILY------------------- 161
              LP  L   QA TL+          +   ++  N   +                    
Sbjct: 122 HRDLPTVLRADQAATLMRATTSPAGLGSDGPLEGPNPVKISPGGGGEREVAQALALRDRL 181

Query: 162 ---LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-C 217
              LLY  G+R+SEA  L   ++   +  +R+ GKG + R VP     ++A+ ++     
Sbjct: 182 LLELLYATGVRVSEACGLDTADVDHSRRVVRVLGKGSRERSVPYGVPAQRALDDWLQAGR 241

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
           P          L  G RG  L+P + +R +       GLP  TT H LRHS ATHLL  G
Sbjct: 242 PVLTGPGSGGALLLGARGGRLHPTMARRIVAGYAEAAGLPR-TTPHGLRHSAATHLLEGG 300

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            DLR++Q +LGH  L++TQIYT+V+ +     +   Y Q HP  
Sbjct: 301 ADLRAVQELLGHSSLASTQIYTHVSVER----LRAAYRQAHPRA 340


>gi|198277427|ref|ZP_03209958.1| hypothetical protein BACPLE_03641 [Bacteroides plebeius DSM 17135]
 gi|198269925|gb|EDY94195.1| hypothetical protein BACPLE_03641 [Bacteroides plebeius DSM 17135]
          Length = 293

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 65/303 (21%), Positives = 137/303 (45%), Gaps = 13/303 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L+ L +ER  S+ T+ SY  D  +F  +     EE         +    +R ++   
Sbjct: 4   DSFLKYLLLERNYSEKTILSYGIDLDEFEAYFKSVDEEF----EFTSVDADVVRGWVLSL 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +   + ++ R LS ++SF  YL ++K+     +  +   KK   LP  + ++    L+
Sbjct: 60  MDEGRAETTVNRKLSSLRSFYHYLLRQKLVAVDPVAKVVGPKKKKPLPVFVRDEAMNQLL 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D           +   R+ A+L + Y  G+R +E ++L  +++      +++ GK +K R
Sbjct: 120 DGFEF----PQTFEGVRDKAMLEVFYSTGMRRAELITLRDEDVDFSALVIKVTGKRNKQR 175

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++P    +++ +  Y        +   +   F    G  L+P      +++    +    
Sbjct: 176 LIPFGDRLQEVLSAYLQERARFYSGECE-AFFIRKSGVRLSPSSVNYIVKRYLSKVVTLK 234

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FAT +L++  +L +++ +LGH  L+T    T V +    + + ++Y+Q H
Sbjct: 235 KKSPHVLRHTFATSMLNHQAELEAVKELLGHESLTT----TEVYTHTTFEELKQVYEQAH 290

Query: 319 PSI 321
           P  
Sbjct: 291 PRA 293


>gi|58584989|ref|YP_198562.1| site-specific recombinase XerD [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
 gi|58419305|gb|AAW71320.1| Site-specific recombinase XerD [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
          Length = 328

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 92/314 (29%), Positives = 146/314 (46%), Gaps = 25/314 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  L  ER  ++ TL+SY  D  Q   FL        +  T+   S T I+ ++    T
Sbjct: 18  YIDALVSERSATQNTLESYRSDLHQLEDFLLK------SGTTLVGASKTNIKDYVKSLCT 71

Query: 81  QK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNI----LNMRNLKKSNSLPRALNEKQAL 135
           QK     S+ R +S +K+F K L    I   +        ++N K    LP+ L+ K+ L
Sbjct: 72  QKKYKSSSISRKISAMKNFYKCLFNDGIIDSNPAPANDDELKNPKVFRPLPKYLSVKEML 131

Query: 136 TLVDNVLLHTSHETKWIDARNS-AILYLLYGCGLRISEALSLTPQ------NIMDDQSTL 188
            L+D V    +   K I++R   AIL +LY  G+RISE +S+         N  D +  +
Sbjct: 132 LLIDTVRKSANEPNKEINSRRLCAILDILYSSGMRISELISMKLCEVSHLLNSSDKECYI 191

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGK-PLNPGVFQRY 246
            I+GK  K R +       +++  Y       + +      LF G +   P+      + 
Sbjct: 192 IIKGKSSKERQILFNEQALQSLRNYLLARDNLISDRKESDWLFPGNKPNKPITRQRIGQL 251

Query: 247 IRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +++L +   +     + H +RHSFATHLL +G  +  IQ ILGH  LSTTQIYT++ +K 
Sbjct: 252 VKELAKKCNIDENKISPHVIRHSFATHLLDSGASIMLIQKILGHTNLSTTQIYTHIANKK 311

Query: 306 GGDWMMEIYDQTHP 319
             D +      +HP
Sbjct: 312 LKDKLA----NSHP 321


>gi|14520598|ref|NP_126073.1| integrase/recombinase xerd [Pyrococcus abyssi GE5]
 gi|73920473|sp|Q9V1P5|XERCL_PYRAB RecName: Full=Probable tyrosine recombinase xerC-like
 gi|5457814|emb|CAB49304.1| xerC/D integrase/recombinase protein [Pyrococcus abyssi GE5]
          Length = 286

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 79/300 (26%), Positives = 138/300 (46%), Gaps = 40/300 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   LE+E G S+ T++ Y     +F        EE  +       +  +   F++K
Sbjct: 13  IEEFATYLELE-GKSRNTVRMYTYYISKFF-------EEGHSP------TARDALRFLAK 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            + +    RSL   +  +K++ K+     +  +S    ++  K   +LP++L E++   +
Sbjct: 59  LKRKGYSTRSLNLVIQALKAYFKF---EGL--DSEAEKLKTPKMPKTLPKSLTEEEVRRI 113

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDK 196
           ++            +           YG GLR+SE  +L  +++  +   + ++G KG K
Sbjct: 114 INAAETLRDRLILLLL----------YGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGK 163

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR---GIRGKPLNPGVFQRYIRQLRRY 253
            R+VP+  S+   I  Y +    D        LF      R   L+P    R +++  R 
Sbjct: 164 DRVVPISESLLSEIKRYLESRNDD-----SPYLFVEMKRKRKDKLSPKTVWRLVKKYGRK 218

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    T H LRHSFATH+L  G D+R IQ +LGH  LSTTQIYT V++K+  + + + 
Sbjct: 219 AGVE--LTPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVKKA 276


>gi|190410733|ref|YP_001966071.1| putative integrase [Thermus sp. 4C]
 gi|148608607|gb|ABQ95627.1| putative integrase [Thermus sp. 4C]
          Length = 386

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 75/306 (24%), Positives = 135/306 (44%), Gaps = 19/306 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              + + LE+E G S  T + Y  D   F  +               ++    IRAF++ 
Sbjct: 85  FARFRRYLEMEEGRSPRTAKEYLMDAGLFARWFRERHGRPPR---FEEVGSQHIRAFLAS 141

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKK-RKI-TTESNILNMRNLKKSNSLPRALNEKQAL 135
           R    +      R L+ ++   +YL +   +   +     ++  K    LP  L   +  
Sbjct: 142 RE---VSPHRAGRVLASLRKLFRYLAEVEGLPLLKDPTEGVKRPKLPRRLPVYLTPPEVA 198

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQG 192
            L+        + +  +  R+ A+L  LYG GLR+SEAL+LT  ++         +R+QG
Sbjct: 199 RLLQ---AAYQNRSPRVALRDWALLAFLYGTGLRLSEALALTYADLTYQDGIPHAIRVQG 255

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG---IRGKPLNPGVFQRYIRQ 249
           KG K R+V L P+ ++A+ ++      + +              RGKP +    +  +++
Sbjct: 256 KGGKERVVVLSPTAQRALHQWLKHRNLEGHPTSPYIWSHTTGPNRGKPFSARAVEAMVKR 315

Query: 250 LRRYLGLP--LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           + R  GL      T H LRHS+A+ L+  G  +  ++ +LGH  +STTQ+Y +V+ K   
Sbjct: 316 VARRAGLKDWRRITPHKLRHSYASALVEAGRGIDEVKELLGHSSISTTQVYVHVSRKRLE 375

Query: 308 DWMMEI 313
           +    +
Sbjct: 376 EAARAL 381


>gi|126178708|ref|YP_001046673.1| phage integrase family protein [Methanoculleus marisnigri JR1]
 gi|125861502|gb|ABN56691.1| tyrosine recombinase XerC subunit [Methanoculleus marisnigri JR1]
          Length = 304

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 79/324 (24%), Positives = 136/324 (41%), Gaps = 39/324 (12%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-----------EKITIQTIR 64
           +    +   L + R  S  T++ Y    R+F  +                 E   +    
Sbjct: 8   EWLDRFSSYLRM-RNYSPRTIEKYLQTIRRFARYAWLRQNSDGVSFDGAAFENAPLDADV 66

Query: 65  QLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
            +S   +  F S    Q+    ++L R +S + SF KYL  +       +L +   +  N
Sbjct: 67  NVSSALVTDFFSYLSEQQDYKPKTLHRMISTLSSFYKYLYVQGAVVADPMLGVERPRIKN 126

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
              + L   Q L L++ +             R+  I+ L+Y  G+R+SE  ++  ++I  
Sbjct: 127 QELKYLKHSQVLRLINTIESE----------RDRLIVRLIYATGVRVSELCAICVEDIDF 176

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           ++ T+R++GKGDKIR V +     + I  +       +   I+ PLF G +G  L+P   
Sbjct: 177 EEQTIRVKGKGDKIRTVFIDEETLEEINRF-------IGNTIEGPLFSGQQGNHLSPRTV 229

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           Q   +Q       P   T H +RHS+A+ L     +LR +Q  LGH  + TT+IY + + 
Sbjct: 230 QHLFKQYA-----PSGITPHKIRHSYASELYRRSKNLRVVQENLGHSSIKTTEIYLHTD- 283

Query: 304 KNGGDWMMEIYDQTHPSITQKDKK 327
               D    +Y Q  P    K ++
Sbjct: 284 ---IDERKRVYQQYFPLSNGKKEE 304


>gi|27497173|gb|AAN64203.1| Int [Photorhabdus luminescens]
          Length = 465

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 86/338 (25%), Positives = 155/338 (45%), Gaps = 27/338 (7%)

Query: 2   EGNNLPEIVSFELLKERQN---WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI 58
           E +  P+ +       RQ+   WL+ ++ + GLS+ T +SYE     F+ +      E  
Sbjct: 129 ETHGQPDAIPARFATLRQHLAAWLEAVQGQ-GLSERTQESYEERLLPFVTWC-----EAR 182

Query: 59  TIQTIRQLSYTEIRAFISKRRT------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
            + T  Q+S   + ++    R+      Q     S +  LS ++ + ++L +R     + 
Sbjct: 183 GVMTAPQVSLPLLESYQRWLRSYRKTNGQPYSPGSQRDRLSVLRQWFRWLLQRHHILYNP 242

Query: 113 ILNMRNLKKSNSLP-RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
           + ++   K+   LP + +NE +  T++       ++       RN  IL +L+  G+R  
Sbjct: 243 VDSLVLPKEEKRLPAQVMNEDETHTVL-----AAANIDTLTGLRNRVILEVLWSTGIRRM 297

Query: 172 EALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
           E  +L    +   +  + ++ GKG+K R+VP+       +  +  + P          LF
Sbjct: 298 EVANLLLSEVDFGRGVVLVRQGKGNKDRVVPIGEQALHWLSRWLSVRPQLTRRGDSGHLF 357

Query: 231 RGIRGKPLNPGVF-QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
              +G+ L  G   Q     +R+   L      H  RHS AT +L NG D R IQ+ILGH
Sbjct: 358 ITRKGRGLARGTLTQIAADSIRKQAQLAKPGACHLFRHSMATQMLENGADTRHIQAILGH 417

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
            +L TTQIYT V   +    + ++++QTHP+  + ++K
Sbjct: 418 EKLETTQIYTRVAIGH----LKKVHEQTHPAERKPEQK 451



 Score = 37.7 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 84/259 (32%), Gaps = 24/259 (9%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M      +     L +    +L NL ++ G S+ +  +       F+ +        I+ 
Sbjct: 1   MSSPVKRQSHPLTLRQHLDAYLDNLLLQ-GASQKSQSARHERLSPFVSWCEEQGV--ISA 57

Query: 61  QTIRQLSYTEIRAFISKRRT---QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
             + +      + ++++ R    Q     S +R L  ++ +  +L+++     S    + 
Sbjct: 58  AQVTEPLLANWQHYLARYRKANGQPYTPDSQRRRLRSLRLWFDWLQQQHAIPASPATTLA 117

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           +  +           Q   +         H   W++A          G GL  SE     
Sbjct: 118 SPDRKKRPSVTETHGQPDAIPARFATLRQHLAAWLEAVQ--------GQGL--SE----R 163

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
            Q   +++    +     + R V   P V   +LE Y             P   G +   
Sbjct: 164 TQESYEERLLPFV--TWCEARGVMTAPQVSLPLLESYQRWLRSYRKTNGQPYSPGSQRDR 221

Query: 238 LNPGVFQRYIRQLRRYLGL 256
           L+  V +++ R L +   +
Sbjct: 222 LS--VLRQWFRWLLQRHHI 238


>gi|317481412|ref|ZP_07940479.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902397|gb|EFV24284.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 343

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 83/331 (25%), Positives = 144/331 (43%), Gaps = 20/331 (6%)

Query: 13  ELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           +  K    +L + L  +R +SK T+ SY     QF+ ++       +    ++ L+   +
Sbjct: 6   DFAKYLTRFLSEYLPHQRNVSKNTIASYRDSFVQFINYMKDINGIPVERLLLKHLTRDNV 65

Query: 72  RAFISKRR-TQKIGDRSLKRSLSGIKSF---LKYLKKRKITTESNILNMRNLKKSNSLPR 127
             ++     T+K    +    L+ I+SF   L+Y+    +    +IL+++  K   S P 
Sbjct: 66  INYLQWLHNTKKNTSATCNYRLAAIRSFCSYLQYIVIDNMVEWQSILSIKAKKTEISPPN 125

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-- 185
            L+ +    L     L     T W   R+ A+L L+Y  G R+ E   LT   +  D   
Sbjct: 126 YLSMEGIKLL-----LAQPDTTSWKGRRHLALLSLMYDTGARVQEIADLTVDCVRIDTTP 180

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            T+R+ GKG K RIVPL  +    +  Y +    +    ++ PLF   R + L       
Sbjct: 181 YTIRLTGKGRKTRIVPLAEAQVDILRSYMEENNLNDPNMMKKPLFFNGRHEKLTREGITY 240

Query: 246 YIRQLRRYLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            ++             +P   + H++RHS A HLL  G +L  I+ ILGH  + TT IY 
Sbjct: 241 ILKIYADMANKQQPEIIPKKISCHSIRHSKAMHLLQAGVNLVYIRDILGHVSIQTTDIYA 300

Query: 300 NVNSKNGGDWMMEIYDQTHPS--ITQKDKKN 328
             +SK   + +   Y +  P+    ++ ++N
Sbjct: 301 RADSKAKREALENAYTRLTPNTITEKEWERN 331


>gi|284992378|ref|YP_003410932.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284065623|gb|ADB76561.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 311

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 86/309 (27%), Positives = 143/309 (46%), Gaps = 14/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +    + ++L  +R LS+ T++ Y  D    L  L            +  L    +R+
Sbjct: 16  LAEALAGYEEHLRTQRDLSEHTVRGYVGDAVWLLDHLVRRGG-----TRVDDLDLATLRS 70

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++++ RT+  G  +  R  +  +SF  +L++  +T E   L + + K   +LP  L   Q
Sbjct: 71  WLAQGRTRGAGRATTARRAAAARSFTGWLRRAGLTAEDVGLRLVSPKAQRTLPDVLAPDQ 130

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           A  +V+      +   + +  R++ +L LLY  G+R+SE + L   ++   +  LR+ GK
Sbjct: 131 ARVVVE----SAAGAEEPVGLRDAVVLELLYASGIRVSELVGLDVDDVDRGRRLLRVLGK 186

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRR 252
           G K R VP      +A+  +       L      P L  G+RG  L+    +R +     
Sbjct: 187 GRKERSVPYGVPAERALDAWLTRGRPALATERSGPALLLGLRGGRLDAREVRRTVHAAVA 246

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                     H LRHS ATH+L  G DLRS+Q +LGH  L+TTQIYT+V  +     +  
Sbjct: 247 AAPGAPDIGPHGLRHSAATHVLEGGADLRSVQELLGHASLATTQIYTHVTVER----LRA 302

Query: 313 IYDQTHPSI 321
           ++ Q HP  
Sbjct: 303 VHAQAHPRA 311


>gi|189460668|ref|ZP_03009453.1| hypothetical protein BACCOP_01310 [Bacteroides coprocola DSM 17136]
 gi|189432627|gb|EDV01612.1| hypothetical protein BACCOP_01310 [Bacteroides coprocola DSM 17136]
          Length = 296

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 75/309 (24%), Positives = 139/309 (44%), Gaps = 15/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L   + ++L+ L+ E+  S  T+ SY  D  +F  +     E          +    IR 
Sbjct: 2   LFMLKDSFLKYLQFEKNYSDKTIVSYGIDLEKFEEYFKTVDE----CLDFTVVDVDLIRG 57

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++     +     S+ R LS ++SF +YL ++ + +   +  +   KK   LP  + E  
Sbjct: 58  WVLSLMEEGYTATSVNRKLSSLRSFYRYLLRQGVVSVDPLQKVVGPKKKKPLPVFVKEAD 117

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+D         T +   R+  IL + Y  G+R+SE + LT  ++      +++ GK
Sbjct: 118 MSRLLD----EADFGTSFEGVRDKVILEVFYETGVRLSELVGLTDADVDLSLKQIKVTGK 173

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR-QLRR 252
            +K R +P    ++  +  Y  +         +   F    GKP+ PG+    ++  L +
Sbjct: 174 RNKQRFIPFGDKLKSDLNAYLSVREERFPGGGE-AFFLRGNGKPIYPGLVYLLVKRNLSK 232

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            + L    + H LRHSFAT +L+N  +L +++ +LGH  L+T    T V +    + + +
Sbjct: 233 VVSLKKK-SPHVLRHSFATSMLNNHAELGAVKELLGHESLTT----TEVYTHTTFEELKK 287

Query: 313 IYDQTHPSI 321
           +Y+Q HP  
Sbjct: 288 VYEQAHPRA 296


>gi|240142448|ref|YP_002966958.1| putative site-specific integrase/recombinase [Methylobacterium
           extorquens AM1]
 gi|240012392|gb|ACS43617.1| Putative site-specific integrase/recombinase [Methylobacterium
           extorquens AM1]
          Length = 365

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 83/328 (25%), Positives = 147/328 (44%), Gaps = 18/328 (5%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           E   + E ++ E       WL+ L  ERG +  +L  Y    R +  FLA          
Sbjct: 39  ETAGMREPMTSEASIAL--WLEALAAERGTATSSLGVYRTSARCWADFLASRG------T 90

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           TI   S  +   +++    + + + ++    + ++S  ++L   +         +  +K+
Sbjct: 91  TIEGASRADFTEYLAHLDARHLSEATIAHRRTVVRSLHRFLMAEEHVGYDPTSLVAPMKR 150

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWID-----ARNSAILYLLYGCGLRISEALSL 176
              LP  L   +   L++        +T  +      AR +A+  +LY  G R+SEA++L
Sbjct: 151 PERLPLVLTIAEVDRLLETAHALARDDTVGLYRQAGYARRAALFEVLYASGTRVSEAVNL 210

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
               I      + ++GKG K R+V L     +A+  + DL     +++    LF  +R  
Sbjct: 211 PAAAIAPGARAMIVKGKGGKERLVMLHRRAIEAVEVWRDLAAAYGSVS-DTWLFHSVRNG 269

Query: 237 --PLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
             PL        I++     G+  P   + H LRH+FA+HLLSNG DLRSIQ +LGH  L
Sbjct: 270 AAPLTRQSALAEIKEAAVAAGIRNPDRVSPHKLRHAFASHLLSNGADLRSIQELLGHADL 329

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHPS 320
            TT+IY + +++     + +++    P+
Sbjct: 330 GTTEIYLHTDTRRTHGMVRDLHPLNEPA 357


>gi|282881982|ref|ZP_06290623.1| tyrosine recombinase XerC [Peptoniphilus lacrimalis 315-B]
 gi|281298012|gb|EFA90467.1| tyrosine recombinase XerC [Peptoniphilus lacrimalis 315-B]
          Length = 326

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 87/313 (27%), Positives = 147/313 (46%), Gaps = 26/313 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIF--------------LAFYTEEKITIQTI 63
             ++L  L   +G S+ T++ Y  D R FL +              L     +K+    +
Sbjct: 7   LDDFLDYLSSSKGHSENTIKEYYYDLRIFLRYMIIRKTNFYDNVKSLDGVDIDKVDEDLL 66

Query: 64  RQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKK 121
           + ++  +I A+IS   + +K+ ++S  R +S +++F  YL  +  +   +   ++   K 
Sbjct: 67  KAINKQDIYAYISYLDKERKLSNKSKYRKISAVRAFFDYLTNKIDLLKINPSESVDLPKI 126

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
             SLP  LN  QA+ L+    +  S E  +   R+  I  L   CG+R+SE   +   +I
Sbjct: 127 EKSLPIYLNLDQAINLLKT--IENSKENDFYRTRDYCICTLFLNCGMRLSELSQINISSI 184

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
            D+   +R+ GKG+K R + L  +   +I  Y    P          LF  +R K ++  
Sbjct: 185 KDE--MIRVLGKGNKERQIYLNNACIYSIKNYLMHRPKV----STDALFISMRKKRMSNR 238

Query: 242 VFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYT 299
             Q  I +  R  GL P   T H LRH+ AT +   G  D++S+Q ILGH  ++TTQIYT
Sbjct: 239 SIQHMIEKHIRNSGLDPNKYTVHKLRHTAATLMYQYGNADIKSLQEILGHESITTTQIYT 298

Query: 300 NVNSKNGGDWMME 312
           +VN     + + +
Sbjct: 299 HVNDAMLKNTVEQ 311


>gi|215447156|ref|ZP_03433908.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           T85]
 gi|289759014|ref|ZP_06518392.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T85]
 gi|289714578|gb|EFD78590.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T85]
          Length = 299

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 72/310 (23%), Positives = 126/310 (40%), Gaps = 13/310 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +      + + L ++ G S  T ++Y  D R    FLA          ++  L+ + +R+
Sbjct: 1   MQAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRG------SSLDALTLSVLRS 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++          +L R  S +K+F  +  +R +        ++  K   +LP  L + Q
Sbjct: 55  WLAATAGAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQ 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           AL  +       + +   +  R+  I+ LLY  G+R+SE   L   +I    S      +
Sbjct: 115 ALRAM-AAAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIEHRPSVGSGARQ 173

Query: 194 GDKIRIVPLL--PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G +             +      D     +       L  G RG+ L+    +  + Q  
Sbjct: 174 GQQEAHSTCSGSQPPMRCTPGLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTV 233

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             +        H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V        + 
Sbjct: 234 AAVDGAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVAR----LR 289

Query: 312 EIYDQTHPSI 321
            ++++ HP  
Sbjct: 290 AVHERAHPRA 299


>gi|116751213|ref|YP_847900.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
 gi|116700277|gb|ABK19465.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
          Length = 304

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 65/308 (21%), Positives = 119/308 (38%), Gaps = 13/308 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE----EKITIQTIRQ 65
              +L    + +   L  E G +  T+ +Y  D                   +T   + Q
Sbjct: 6   ADLDLTGATEAFCARLSAE-GRATATIAAYRRDLALVARVAGELAPGIVCRAVTAGFLDQ 64

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +        +++         SL R  + +++F  +  +  +  ++   ++R  +    L
Sbjct: 65  VFSA---GAVTESERGPRSAASLHRMKAAVRAFFAWAVEVGVVDDNPARSIRMQRLPRKL 121

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P  L   +   L    L      T +   R+ A++ +L G G+R+ E  +L   +I  D 
Sbjct: 122 PVFLTTAEKKRL----LKELKGRTDFSALRDRAMIEVLLGTGIRLGELAALDMDDIDLDA 177

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             LR++ KG+  ++  +   +R  +  Y           ++  LF   R   L       
Sbjct: 178 KHLRVRAKGNVPQVKFIKTDLRTLLRRYLAERRRHGRPEME-ALFLSNRDGRLCQRQIAN 236

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +    R  G+    T H LRH+FATHL     DL  +Q  LGH  +STTQIYT++    
Sbjct: 237 RLAHWLRKAGIEKELTPHGLRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQ 296

Query: 306 GGDWMMEI 313
             + +  +
Sbjct: 297 LEEALERL 304


>gi|47094600|ref|ZP_00232245.1| integrase/recombinase XerC [Listeria monocytogenes str. 4b H7858]
 gi|47017024|gb|EAL07912.1| integrase/recombinase XerC [Listeria monocytogenes str. 4b H7858]
          Length = 241

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 64/249 (25%), Positives = 116/249 (46%), Gaps = 10/249 (4%)

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++ + +     ++ R +S ++SF  +L +  +  E+    + + K    LP+    ++ 
Sbjct: 1   MTELKQKSFSRTTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEM 60

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L   V      + + +  R+  +L +LYG G+R+SE   +   ++      + I+GKG
Sbjct: 61  EALFQVVY----EDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKG 116

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           +K R VP       AI +Y       ++        L     G PL     +  + ++  
Sbjct: 117 NKERYVPFGVYAEDAITDYLPERANLMSRYKKSHDALLVNHYGDPLTTRGIRYCLSKIIS 176

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L      H LRH+FAT LL+NG D+R++Q +LGH  LS+TQIYT+V  ++    +  
Sbjct: 177 KASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----LKS 232

Query: 313 IYDQTHPSI 321
            Y + HP  
Sbjct: 233 TYMKHHPRA 241


>gi|302865900|ref|YP_003834537.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
 gi|315502445|ref|YP_004081332.1| integrase family protein [Micromonospora sp. L5]
 gi|302568759|gb|ADL44961.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
 gi|315409064|gb|ADU07181.1| integrase family protein [Micromonospora sp. L5]
          Length = 352

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 85/355 (23%), Positives = 143/355 (40%), Gaps = 46/355 (12%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
                E +   + +   ++  +L   R  S  T+++Y  D    L         ++    
Sbjct: 8   TREAHEELPASMREAVDDFADHLSRVRNRSVHTVRAYVTDLVSLLDHAV-----RMGCAE 62

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           + +L    +R++++K+RT      ++ R  +  ++F  +  +  +  +     + + +  
Sbjct: 63  LPELDLAVVRSWLAKQRTMGAARTTMARRAAAARTFSAWAHRTGLLADDVAAPLASPRAR 122

Query: 123 NSLPRALNEKQALTLVDNV-----------------------------------LLHTSH 147
             LP  L   QA  LV+                                           
Sbjct: 123 RELPTVLRADQAAALVEAPSRQRRSPPGADRSTVHPEGTGLGRDHGTAAEPASAEPAGDG 182

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
               +  R+  +L LLYG G+RISEA  L   ++   +  +R+ GKG + R VP     +
Sbjct: 183 PPDAVLLRDRLLLELLYGTGVRISEACGLDVSDVDQARRVVRVLGKGGRERAVPYGVPAQ 242

Query: 208 KAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           +A+  +     P  L       L  G RG  LNP   +R +       G+P   T H LR
Sbjct: 243 RALDAWLRDGRPALLAPGSGRALLLGARGGRLNPTTARRIVSGWAGAAGVPR-VTPHGLR 301

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           HS ATHLL  G DLR++Q +LGH  L++TQIYT+V+ +     +   Y Q HP  
Sbjct: 302 HSAATHLLEGGADLRAVQELLGHSSLASTQIYTHVSVER----LRAAYRQAHPRA 352


>gi|326387724|ref|ZP_08209330.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207770|gb|EGD58581.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 300

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 85/303 (28%), Positives = 134/303 (44%), Gaps = 27/303 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L  ERG +  TL +Y  D       L               L+  + R  +++  
Sbjct: 13  AFLAMLSAERGAAANTLAAYRRDLAGAAQVLG-------------DLALAD-RGALARLG 58

Query: 80  T--QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +   SL R  S ++ F  +L +  +  +     +  ++    LPR L+  +   L
Sbjct: 59  EVWADLAPASLARKASALRQFYAFLVEEGLREDDPGDALPRVRARRPLPRLLDHGEIGAL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                   + E      R  A++ LLYG GLR +E +SL    +  D   L I GKG + 
Sbjct: 119 FSLAEADAA-EGDPAALRLLALVELLYGSGLRATELVSLPLVAVPRDAPFLAITGKGGQQ 177

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL- 256
           R+VP+      A+ ++  + P          +F   RG  L      + +R L    GL 
Sbjct: 178 RLVPVGERAGAALRDWLRVRPAGGR-----YVFPSPRGGHLTRVRLFQLLRDLALRAGLD 232

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           P   + H LRH+FATHLL  G DLR +Q++LGH  ++TTQIYT+V+    G  ++ + +Q
Sbjct: 233 PEKVSPHVLRHAFATHLLEGGADLRVLQTLLGHADIATTQIYTHVD----GARLVSLVNQ 288

Query: 317 THP 319
            HP
Sbjct: 289 RHP 291


>gi|325971099|ref|YP_004247290.1| tyrosine recombinase xerC [Spirochaeta sp. Buddy]
 gi|324026337|gb|ADY13096.1| Tyrosine recombinase xerC [Spirochaeta sp. Buddy]
          Length = 297

 Score =  199 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 132/307 (42%), Gaps = 20/307 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-R 79
           +L   +  R LS+ TL +YE D  Q   +             + + S  + R F+    +
Sbjct: 10  FLTTQKSIRSLSEHTLCAYERDLLQLQSYFTSLQ------VPLLEASREDARMFVRYLVK 63

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  S+ R +S  +SF   L K +    +    +   ++ + LP  L  ++   L+ 
Sbjct: 64  DSSYAQSSINRKISCARSFYSSLLKAERIASNPFSLIAVHRQMDRLPSVLTVEEVTALLS 123

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                      +   R+  +  LLY  G RISE LS+   +I  +   +R+ GKG+K R 
Sbjct: 124 LPYA------DFPSTRDMTVFTLLYDTGCRISELLSIKESDIEWETKRVRVLGKGNKSRY 177

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           V         +  Y  L     +  +   L    +GK L            R  LG    
Sbjct: 178 VFFTDHCASLLSSYLSLKHERFSNPL---LICSNKGKQLPMSTVGSMFAVYRSRLGWQKP 234

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T H LRH++ATHLL NG D+R +Q +LGH  +STTQIYT+V+ +     +  +Y  +HP
Sbjct: 235 FTPHVLRHTYATHLLDNGADIRLVQELLGHQSISTTQIYTHVSKER----LAHVYAYSHP 290

Query: 320 SITQKDK 326
              ++D+
Sbjct: 291 HGRKQDE 297


>gi|300813238|ref|ZP_07093603.1| site-specific tyrosine recombinase XerC [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300512645|gb|EFK39780.1| site-specific tyrosine recombinase XerC [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 326

 Score =  199 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 87/313 (27%), Positives = 147/313 (46%), Gaps = 26/313 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIF--------------LAFYTEEKITIQTI 63
             ++L  L   +G S+ T++ Y  D R FL +              L     +K+    +
Sbjct: 7   LDDFLDYLSSSKGHSENTIKEYYYDLRIFLRYMILRKTNFYDNVKSLDEVDIDKVDEDLL 66

Query: 64  RQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKK 121
           + ++  +I A+IS   + +K+ ++S  R +S +++F  YL  +  +   +   ++   K 
Sbjct: 67  KAINKQDIYAYISYLDKERKLSNKSKYRKISAVRAFFDYLTNKIDLLKINPSESVDLPKI 126

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
             SLP  LN  QA+ L+    +  S E  +   R+  I  L   CG+R+SE   +   +I
Sbjct: 127 EKSLPIYLNLDQAINLLKT--IENSKENDFYRTRDYCICTLFLNCGMRLSELSQINISSI 184

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
            D+   +R+ GKG+K R + L  +   +I  Y    P          LF  +R K ++  
Sbjct: 185 KDE--MIRVLGKGNKERQIYLNNACIYSIKNYLMHRPKV----STDALFISMRKKRMSNR 238

Query: 242 VFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYT 299
             Q  I +  R  GL P   T H LRH+ AT +   G  D++S+Q ILGH  ++TTQIYT
Sbjct: 239 SIQHMIEKHIRNSGLDPNKYTVHKLRHTAATLMYQYGNADIKSLQEILGHESITTTQIYT 298

Query: 300 NVNSKNGGDWMME 312
           +VN     + + +
Sbjct: 299 HVNDAMLKNTVEQ 311


>gi|254818892|ref|ZP_05223893.1| site-specific tyrosine recombinase XerD [Mycobacterium
           intracellulare ATCC 13950]
          Length = 209

 Score =  199 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 65/214 (30%), Positives = 102/214 (47%), Gaps = 7/214 (3%)

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
                +R       LP++L   Q L L++     +  +   +  RN A+L LLY  G RI
Sbjct: 1   DVARAVRPPTPGRRLPKSLTVDQVLALLEGAGGDSPADG-PLTLRNRALLELLYSTGARI 59

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--P 228
           SEA+ L   ++     ++ ++GKG K R+VP+      A+  Y      DL    +    
Sbjct: 60  SEAVGLDVDDVDTQARSVLLRGKGGKQRLVPIGRPAVAALDAYLVRGRSDLARRGRGTPA 119

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +F  +RG  L+     + ++      G+    + H LRHSFATHLL  G D+R +Q +LG
Sbjct: 120 IFLNVRGGRLSRQSAWQVLQDAAERAGITSGVSPHMLRHSFATHLLEGGADVRVVQELLG 179

Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           H  ++TTQIYT V        + E++ + HP   
Sbjct: 180 HASVTTTQIYTMVT----VHALREVWAEAHPRAR 209


>gi|300115010|ref|YP_003761585.1| integrase family protein [Nitrosococcus watsonii C-113]
 gi|299540947|gb|ADJ29264.1| integrase family protein [Nitrosococcus watsonii C-113]
          Length = 310

 Score =  199 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 83/320 (25%), Positives = 145/320 (45%), Gaps = 25/320 (7%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E  + +  + R+++L +L   +G S+ T  +Y  D   +  +LA            RQ +
Sbjct: 2   EKKAVDFWQARKDFLAHLHYAKGYSQGTCYAYNSDLGIWGRWLAEAG------NDWRQAT 55

Query: 68  YTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           + +   F++   R +      + R  S + SF K+  K  +     I      K+   +P
Sbjct: 56  HVDTEQFVAWQMRERGTKAHIVARRSSCLGSFYKWAMKNALVESDPIYLADKPKRPYRIP 115

Query: 127 RALNEKQ----------ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             L +++             L +N+  HT    K +  R   +  L+   GLRISEAL++
Sbjct: 116 VWLEKEEQLAFQEAVQRTEDLPENIFGHTRAHIKTVRRRYDVLFGLILNSGLRISEALAV 175

Query: 177 TPQNIMDDQST---LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
             +++         +RI GKG++ R+VPL  +  + +  +         +  + P     
Sbjct: 176 KVRDVRVVNGIAKSVRIIGKGNRERLVPLPEAFGQVLGAWLQDRAVGDFVFAKAP----- 230

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
             KPL P   + Y+R+L    G+    T H LRH++AT LL  G +L  IQ++LGH  LS
Sbjct: 231 GEKPLGPHAVRAYLRRLIERAGIDKPVTPHKLRHTYATRLLEAGAELVDIQALLGHVDLS 290

Query: 294 TTQIYTNVNSKNGGDWMMEI 313
           TTQIYT+V+ +     + ++
Sbjct: 291 TTQIYTHVSEERMAGVVAKL 310


>gi|300723777|ref|YP_003713084.1| Tyrosine recombinase xerC 2 [Xenorhabdus nematophila ATCC 19061]
 gi|297630301|emb|CBJ90955.1| Tyrosine recombinase xerC 2 [Xenorhabdus nematophila ATCC 19061]
          Length = 342

 Score =  199 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 84/323 (26%), Positives = 148/323 (45%), Gaps = 25/323 (7%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
               L ++ + +L  + ++RG SK T ++Y    R F+ +      E   ++   Q+S  
Sbjct: 3   TPPTLRQQLEAYLDTV-VDRGYSKRTQEAYRERLRPFVDWC-----ELRDVRHAPQVSLA 56

Query: 70  EIRAFISKRRTQKIGDRS------LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
            + ++    R+ +  D        L   LS ++ + ++L KR     +    +   K+  
Sbjct: 57  LLESWQRYLRSYRKADGQYYTSGGLINRLSALRGWFRWLLKRHHILYNPAELLTMPKEEK 116

Query: 124 SLP-RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            LP + L+E +  T++ ++ + T      +  RN A+L + +  G+R +E ++L   +I 
Sbjct: 117 RLPAQVLSETETETVLMSIDIQTP-----LGLRNRALLEVFWSTGIRRNELINLKLSDID 171

Query: 183 DDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNP 240
             +  + ++ GKG K R+VP+       +  Y       L        LF  ++G+PL  
Sbjct: 172 SGRGVIMVRQGKGRKDRVVPIGERALAWVNRYLADVRPRLAWKYDSGYLFITLKGQPLAR 231

Query: 241 GVFQRYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                   R +R+   L    T H  RHS AT +L NG D R IQ+ILGH +L TTQIYT
Sbjct: 232 STVTLMAGRTIRQQARLNKPGTCHVFRHSMATQMLENGADTRHIQAILGHEKLETTQIYT 291

Query: 300 NVNSKNGGDWMMEIYDQTHPSIT 322
            V   +    +  ++ QTHP+  
Sbjct: 292 RVAIGH----LKAVHHQTHPAER 310


>gi|254518744|ref|ZP_05130800.1| phage integrase [Clostridium sp. 7_2_43FAA]
 gi|226912493|gb|EEH97694.1| phage integrase [Clostridium sp. 7_2_43FAA]
          Length = 292

 Score =  199 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 133/292 (45%), Gaps = 15/292 (5%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
             S+ T+ +Y  D   ++ +L           +I +     +  +I    +Q   +RS+ 
Sbjct: 16  HKSENTVYAYVTDVNLYVKYLKSKNM------SIDETDNVSVLGYIQYLLSQGKSERSIN 69

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R +  ++SF  YLK +K+ +E   +  +N   +  LP  L   +   ++  V      + 
Sbjct: 70  RIVISLRSFYNYLKDQKVVSEIPKIYYKNTTTTKKLPEILTIDEVDRIIKIV-----DKD 124

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
                R++A+L L+Y  G+++SE + L   +I  + + ++     +  R++P+  S  +A
Sbjct: 125 CNKGIRDNALLELMYATGMKVSEIIGLNVYDINLELNFVKCHDNKNYERLIPIGRSATEA 184

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           + EY  +     +  ++  LF  + G  L      R +++     G+      +T RHSF
Sbjct: 185 LKEYLKIRDQVASAGVET-LFVNLNGNHLTRQGVWRIVKEYSHKAGIKKEVNLNTFRHSF 243

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           A HLL NG ++R++Q +LG+  L+    Y  + +    D +  +Y  +HP  
Sbjct: 244 AVHLLQNGANVRAVQKLLGNQVLTYMDTYYEIIN---NDKINIVYKNSHPRA 292


>gi|294012386|ref|YP_003545846.1| integrase/recombinase XerD [Sphingobium japonicum UT26S]
 gi|292675716|dbj|BAI97234.1| integrase/recombinase XerD [Sphingobium japonicum UT26S]
          Length = 305

 Score =  199 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 143/305 (46%), Gaps = 22/305 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L+ +  ERG S+ TL +Y  D       +   +    T   + +L+          
Sbjct: 8   IDRFLEMMAAERGASRNTLLAYRADLTGAGEIVGGLS--SATRDRLAELTTAWAE----- 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +   S+ R  S +++F  +L++  +  ++    +       SLP+ L+ ++  +L
Sbjct: 61  -----LAASSVARKSSALRAFYAFLEEEGLRADNPSSALPRPVTRRSLPKILSTQEVDSL 115

Query: 138 VDNVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
              +    + E    +D R SA++ LLYG GLR +E +SL  + +  D+  L ++GKG +
Sbjct: 116 FALIAGKLAVEHPAPLDLRLSALIELLYGSGLRATELVSLPRRALASDRPFLILKGKGAR 175

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+VP+    R A+  +    P D      L LF   +       ++Q            
Sbjct: 176 ERLVPISDRARAAVAAWLHHVPAD-----SLWLFPSGKSHVSRIRLYQMVKALAAAAGIA 230

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           P   + H LRH+FATHLL  G DLR++QS+LGH  + TTQIYT+V+S+     ++E+ + 
Sbjct: 231 PERVSPHVLRHAFATHLLEGGADLRALQSMLGHADIGTTQIYTHVDSRR----LVELVNS 286

Query: 317 THPSI 321
            HP  
Sbjct: 287 RHPLA 291


>gi|304440179|ref|ZP_07400069.1| tyrosine recombinase XerC [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371228|gb|EFM24844.1| tyrosine recombinase XerC [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 321

 Score =  199 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 82/322 (25%), Positives = 145/322 (45%), Gaps = 26/322 (8%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIF------------LAFYTEE 56
           +++F LL    ++L  L   RGLS  T+  Y  D + FL++            L     E
Sbjct: 2   VMNFTLLD---DFLGYLVSTRGLSMNTVNGYYYDLKNFLVYIVARKLNFDTKELDDRYLE 58

Query: 57  KITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNIL 114
           K+++  I+ ++  +I A+ S    T+K    ++ R  S I++F  YL  +  +       
Sbjct: 59  KMSLDLIKTVNKQDIYAYNSYLVHTKKNKMNAVSRKNSAIRTFFNYLTSKINVLEVDPSS 118

Query: 115 NMRNLKKSNSLPRALNEKQALTLVD--NVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           ++   K   ++P AL+  +A   +       +      ++ +R+  I      CG+R+SE
Sbjct: 119 DLDMPKVRRTIPTALSLDEAKRFLKTIEDFNYNGKNNDFLKSRDFCIATFFLNCGMRLSE 178

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
              +   ++ DD  T++I GKG+K R + L  +   A+  Y +  P          LF  
Sbjct: 179 LCGINMFDLEDDN-TIKILGKGNKERSIYLNKACIHALDNYLEFRPEV----ESKALFLS 233

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHF 290
                + P   Q  I +     GL P   + H LRH+ AT +   G  D+RS+Q +LGH 
Sbjct: 234 RNKARITPRAVQMMIDKYIVMSGLDPDKYSVHKLRHTAATLMYQYGDVDIRSLQKVLGHE 293

Query: 291 RLSTTQIYTNVNSKNGGDWMME 312
            + TT+IYT+V+ +     + +
Sbjct: 294 SVQTTEIYTHVSDEQVKRAIEK 315


>gi|256832233|ref|YP_003160960.1| integrase family protein [Jonesia denitrificans DSM 20603]
 gi|256685764|gb|ACV08657.1| integrase family protein [Jonesia denitrificans DSM 20603]
          Length = 333

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 80/338 (23%), Positives = 138/338 (40%), Gaps = 36/338 (10%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIF-----------------LAFYTEEK 57
           +     + +++ + +GL+  T  +Y  D                              E+
Sbjct: 1   MTLLDEYDKHVTLRKGLAAATAVAYRSDLVDLFAHVHARRTSRRHAQEKLTKYNKAHSER 60

Query: 58  ITIQTIRQ------LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111
           +++   +       ++  E+R +++   TQ +   ++ R  +  + F  +L +R I  + 
Sbjct: 61  LSVTDAQTDEYAVTITLEELREWLAHSLTQNLSRSTIARRGASARQFFAWLVERGIRHDD 120

Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDN----VLLHTSHETKWIDARN----SAILYLL 163
               +      ++LP  L   Q   L+       L  T+     +         A + L 
Sbjct: 121 PSKRLTTPTPHSALPHVLTVAQVKQLLAAVERVYLPETTDTNTELSRARTDRLRAAVELT 180

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
           Y  GLRI+E +SL   +I  +Q  +R+ GKG+K R VPL     +A+  +       +  
Sbjct: 181 YSSGLRIAELVSLNVGDIDHEQRVIRVTGKGNKQRRVPLGLPALQALERWIAESRPIMQS 240

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             +  LF G+RG   N    +  + +   +  L +    H LRH+ ATHLL  G DLRS+
Sbjct: 241 TSEEALFLGVRGGRWNARQVRDELNKAALHADLDV-VRPHDLRHTTATHLLEGGADLRSV 299

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           Q ILGH  L TTQ YT+V        + + Y   HP  
Sbjct: 300 QEILGHSSLRTTQRYTHVTMTR----LRDTYAHAHPRA 333


>gi|182420240|ref|ZP_02951470.1| tyrosine recombinase [Clostridium butyricum 5521]
 gi|237666087|ref|ZP_04526075.1| tyrosine recombinase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182375938|gb|EDT73529.1| tyrosine recombinase [Clostridium butyricum 5521]
 gi|237659034|gb|EEP56586.1| tyrosine recombinase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 323

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 84/310 (27%), Positives = 139/310 (44%), Gaps = 27/310 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-------------EKITIQTIRQL 66
           N+L  +   +G SK TL  Y  D   F  FL                    I  + IR +
Sbjct: 15  NYLSYMSSIKGSSKKTLHVYTTDLILFFRFLKRDRNLVNIDIPFEEIEIYDINKEFIRSI 74

Query: 67  SYTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKSNS 124
             ++I +F+S     +   + + +R ++ +KSF ++L  +  +       N+   K    
Sbjct: 75  DSSDIYSFLSYTEFERNNSNVTRRRKIACLKSFFRFLYLKLHMIDTDLCENLERPKAKPK 134

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L E + ++L++N+       T     R+  I+ L    GLR+SE  S+   +I DD
Sbjct: 135 LPVYLKENECVSLLNNI-------TGRNIVRDRCIITLFINTGLRLSELCSINISSIKDD 187

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC---PFDLNLNIQLPLFRGIRGKPLNPG 241
             TL + GKG+K R + L  S    +  Y          +    +  LF   + + +NP 
Sbjct: 188 --TLVVLGKGNKERYIYLNESCLSQLEVYLRYRSEKYIPIKEGHEDALFLSEQKQRINPR 245

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             +  + +  +   L    +AH LRH+ AT L   G D+RSIQ++LGH  ++TTQIYT+V
Sbjct: 246 SVENIVVKAVKSACLDKHYSAHKLRHTCATLLYKAGADIRSIQTLLGHESVATTQIYTHV 305

Query: 302 NSKNGGDWMM 311
           +     D + 
Sbjct: 306 DVDQIRDIVK 315


>gi|309775337|ref|ZP_07670345.1| putative tyrosine recombinase XerD [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916919|gb|EFP62651.1| putative tyrosine recombinase XerD [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 309

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 79/296 (26%), Positives = 135/296 (45%), Gaps = 15/296 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +LQ   I + L+  TL++Y+ D +QFL F+  Y+           +    + A+I+   
Sbjct: 12  QYLQECSIAKELNAHTLKAYQIDLKQFLSFMELYSY---------DIQKESLHAYITHLH 62

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLV 138
                 +++KR ++ I +   YL        + +  +R   ++   LPR +      ++ 
Sbjct: 63  KTYQKPKTIKRKIASINALFSYLVFHDFIETNPMSRLRTAFREPRLLPRTIPNSHLSSIF 122

Query: 139 ----DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
               D +    +   + +  RN+A+L LL+  G+R+SE   +    I   +  +RI GKG
Sbjct: 123 SRVYDEMKDCKTSYQRKVCTRNAAVLELLFSTGMRVSELCHVKDDEINLRERYVRIYGKG 182

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K RI+ +       IL Y     F   +      F    G PL+    +  I +  + L
Sbjct: 183 AKERILQIGNPDVLKIL-YSYRALFQKEIETSGYFFINKLGNPLSEQSVRLLIARYEKIL 241

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +P   T H  RH+FAT LL    D+R IQ ILGH  ++TTQIYT+++S    + +
Sbjct: 242 KIPQHLTPHMFRHTFATQLLEEDVDIRYIQHILGHSSITTTQIYTHISSNKQKEIL 297


>gi|210622505|ref|ZP_03293210.1| hypothetical protein CLOHIR_01158 [Clostridium hiranonis DSM 13275]
 gi|210154218|gb|EEA85224.1| hypothetical protein CLOHIR_01158 [Clostridium hiranonis DSM 13275]
          Length = 302

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 68/309 (22%), Positives = 139/309 (44%), Gaps = 16/309 (5%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           F +    + +++ +E +R LS  T+ SY  D +++  +L            I+ +  T+I
Sbjct: 9   FRMDNLIKEYIEYIENKRKLSLNTVSSYRADLKKYKDYLEENNI------DIKDVVETDI 62

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
             ++ +         ++ R+ S IKSF  YL   KI       N++  K        L E
Sbjct: 63  LNYLVELEKNNTSVSTIARTTSSIKSFHDYLFFSKICAIDPAKNIKKPKIKKETVEILTE 122

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           ++   L++   L ++   +     + AI  +LYG G+++SE + L  +++  +  ++   
Sbjct: 123 EEIEALLNFENLDSNKLKR-----DKAIFEVLYGTGMKVSELIDLNVEDVDFEMGSITCS 177

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
              +K R++PL+   +K +  Y +    ++  + +  LF    G         + I++  
Sbjct: 178 SSKNK-RVIPLIDVTKKYLELYVNEARENVVADGENALFVSALGHRFTRQGLWKIIKKYS 236

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +   +  +     LRHSFA H+++ G ++ S+  ILG+  LS+ Q Y +   +N    M 
Sbjct: 237 KKANIDKNINPTMLRHSFAIHMINKGANIASVNKILGNTNLSSIQSYLSCIDQN----MR 292

Query: 312 EIYDQTHPS 320
           +  +  HP 
Sbjct: 293 KEMNLRHPR 301


>gi|13541094|ref|NP_110782.1| integrase/recombinase [Thermoplasma volcanium GSS1]
 gi|14324479|dbj|BAB59407.1| integrase / recombinase [Thermoplasma volcanium GSS1]
          Length = 283

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 78/305 (25%), Positives = 143/305 (46%), Gaps = 33/305 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +N++  +  ER  SK T++ Y+    +FL F+          +T  +++  +I  + + 
Sbjct: 9   VENFVSYMVGER-KSKYTIKEYKFLVSKFLAFVG---------KTPAEVTPMDIERYKTF 58

Query: 78  RRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             ++      S   ++  IK F K L  R        +N+   ++S  +P  LNE++A  
Sbjct: 59  LASKAHYSKASQYLAIKAIKLFYKSLDLRY------PVNLTPPRRSMHMPVYLNEEEASR 112

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGD 195
           L+        +          A++ +L   G+R+ E  +L   ++   +  + ++ GKGD
Sbjct: 113 LLSASKKSVKYS---------AVISVLAYTGIRVGELCNLRIGDVDMQEGIIYVKSGKGD 163

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RIV +      A+ EY +             LF   +    +P   +R +++L +  G
Sbjct: 164 KDRIVVMPNECVSALKEYLNWRI--SVETPHDFLFISNKKSRYDPSTVERMVKRLSQEAG 221

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T H LRH+FAT +L NGGD+R IQ ILGH  ++TTQIYT+++     + + ++Y 
Sbjct: 222 INKRVTPHVLRHTFATSVLRNGGDIRFIQQILGHSSVATTQIYTHLDD----NALKDMYF 277

Query: 316 QTHPS 320
           +  P 
Sbjct: 278 KHRPR 282


>gi|218458541|ref|ZP_03498632.1| site-specific tyrosine recombinase XerC [Rhizobium etli Kim 5]
          Length = 198

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 103/206 (50%), Positives = 139/206 (67%), Gaps = 8/206 (3%)

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +R+ K+  SLP+ L++ QA+T+V N      H+  WI AR++A++ LLYGCGLRISEAL 
Sbjct: 1   IRSPKQPKSLPKPLSDTQAITVVSNE--AQLHDEPWIAARDAAVMTLLYGCGLRISEALD 58

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           L P ++    +TLRI GKG+K R+VPLLP V  A+ +Y  LCP+ L      PLFRG RG
Sbjct: 59  LVPADLPKGAATLRITGKGNKTRLVPLLPVVFDAVEKYRTLCPYHLESGA--PLFRGARG 116

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             L   + QR +++LR   GLP + T H LRHSFATHLL+ GGDLR+IQ +LGH  LSTT
Sbjct: 117 GKLQAAIIQRAMQKLRSAFGLPETATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTT 176

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHPSI 321
           Q+YT V++      ++E+YD+ HP  
Sbjct: 177 QVYTGVDASR----LLEVYDRAHPRA 198


>gi|254994614|ref|ZP_05276804.1| integrase/recombinase [Anaplasma marginale str. Mississippi]
          Length = 267

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 73/273 (26%), Positives = 120/273 (43%), Gaps = 19/273 (6%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
             S  ++RA++    ++     ++ R +S I+    +L   +I       N+ + K    
Sbjct: 3   DASAADLRAYVRSLNSRGYSPATVARRISAIRGLYGFLYGDRIIDGDPAANLDSCKLGRP 62

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN---- 180
           LP+ L   +   L+       S E +       AI+ +LY  G+RISE ++L   +    
Sbjct: 63  LPKVLTVDEVDKLLCAAGSDLSVEGRRTA----AIVNILYSSGVRISELINLGFYDIESM 118

Query: 181 ---IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRG 235
                 D   L I+GK  + R++ L      +I+ Y  +    +    +    LF G + 
Sbjct: 119 LKEQRSDVGHLVIKGKAGRERLILLNEVAIASIVAYLAVRDHFIVGQKSESRWLFPGAKF 178

Query: 236 KP-LNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
              ++     + ++ L    G+ P   + H LRHSFATHLL+NG ++  IQ +LGH  LS
Sbjct: 179 DQCISRQRVGQLLKALAIVAGVDPKRISPHKLRHSFATHLLNNGSNVVFIQKMLGHASLS 238

Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
           TTQIYT V +    D + E     HP      K
Sbjct: 239 TTQIYTYVAN----DRLKEALQTFHPFAKSPPK 267


>gi|89894917|ref|YP_518404.1| hypothetical protein DSY2171 [Desulfitobacterium hafniense Y51]
 gi|89334365|dbj|BAE83960.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 290

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 136/308 (44%), Gaps = 33/308 (10%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            +L ++ Q +L   ++E GLS LTL+ Y  + R F   +          +   +++  ++
Sbjct: 11  PDLQQKIQLFLAGKKLE-GLSDLTLKGYGIELRIFAEHVH---------KAADEITTADL 60

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           R ++ + +  ++   S+   LS +KSF  +L    I  +     ++  KK   +P+AL+ 
Sbjct: 61  RLYLGEFKGLRLS--SISGKLSVLKSFFSWLAAEDILLKDPSRKIKPPKKEKRIPKALSI 118

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           ++   L +            I  R  A++ ++Y  G R+SE   +   ++     +  + 
Sbjct: 119 EELEMLREAC----------ITPRERALIEVMYATGCRLSEVQKMNRDDVDYQTMSASVI 168

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQ 249
           GKG+K R V         + +Y          +    LF   R   + L+    QR ++ 
Sbjct: 169 GKGNKERTVYFSYKAMYHLKKYLMRR-----ADEAEALFITERRPYRRLSARGIQREVKL 223

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           +     +  +   H LRH+FAT +L+NG D+ S+Q++LGH    TTQIY     +     
Sbjct: 224 IADRSEVRKNVHPHVLRHTFATLMLNNGADIASVQALLGHEDPGTTQIYAQSTDERK--- 280

Query: 310 MMEIYDQT 317
             ++Y Q 
Sbjct: 281 -QQVYKQH 287


>gi|326799802|ref|YP_004317621.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21]
 gi|326550566|gb|ADZ78951.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21]
          Length = 293

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 90/304 (29%), Positives = 158/304 (51%), Gaps = 13/304 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + ++  L  E+  S+ TL++YE D R +L F      E+I+     ++ + ++R ++S 
Sbjct: 3   VERFMSFLRFEKHYSEHTLKAYEKDVRSYLQFW---VAEQIS---FEEVGHKQLRYYLSI 56

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +   S+ R LS ++++ K+L++  +   +  L ++ LKK   LP  + E +   L
Sbjct: 57  LMDSGLEASSINRILSSLRTYYKFLQRESLYGANPTLLVKALKKPKKLPVVIQEDKLNQL 116

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D+  +   +   +   R+  I+ LL+G G+R++E + L  ++I     T+RI GK +K 
Sbjct: 117 LDHDHIFQDN---FEGQRDRLIIELLFGTGMRLTELIQLQEKDIDYYNQTIRILGKRNKE 173

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RIVP+LP ++  I +Y  L   +   N  L L   I+GK   P +  + + +    +   
Sbjct: 174 RIVPMLPHLKLLIEQYLKLKKIENLDNNSLTLVVTIKGKQAYPKLIYQVVIRYLSLITSQ 233

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRHSFAT LL+ G DL +I+ +LGH  L  TQ+YT+    N  + +  IY Q 
Sbjct: 234 QKKSPHVLRHSFATALLNKGADLNAIKELLGHANLVATQVYTH----NSVERLKSIYKQA 289

Query: 318 HPSI 321
           HP  
Sbjct: 290 HPKA 293


>gi|188587679|ref|YP_001921083.1| site-specific tyrosine recombinase XerC [Clostridium botulinum E3
           str. Alaska E43]
 gi|188497960|gb|ACD51096.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 329

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 87/318 (27%), Positives = 150/318 (47%), Gaps = 26/318 (8%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT----EEKITIQT------ 62
           +L     ++L  LE  +  S  T+ +Y+ D   F  F+  Y     ++KI  +       
Sbjct: 12  DLPDSVIDFLNYLETIKNKSSNTIAAYKKDLTIFFRFMKLYRGIVKDKKIEFEDIDITDI 71

Query: 63  ----IRQLSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNM 116
               ++ +   ++ AF+S   + +     +  R ++ +KS+ K+L+ + KI  ++    +
Sbjct: 72  DDEFLKSIQLRDLYAFMSFIEKYRNNSTYARARKVATLKSYFKFLQGKAKIIVDNPTTEL 131

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
            + K +   P  L   Q++      LL +  +     AR+  IL L   CG+R+SE   +
Sbjct: 132 ESPKINKRQPVYLTLDQSI-----HLLSSLDKNNKNYARDYCILTLFLNCGMRLSELCGI 186

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIRG 235
           + + I +D   L I GKG+K R V L  +  K+I  Y  +      L   +  LF     
Sbjct: 187 SIEKIRND--ILAIIGKGNKERTVYLNEACLKSIENYMRIRDDSKALPEYKKFLFLSSHN 244

Query: 236 KPLNPGVFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLS 293
           KP+N    +  I++  +  GL     T H LRH+ AT +   G  D+RS+Q+ILGH  +S
Sbjct: 245 KPINQRTVEIMIKKHVKNAGLTDAKYTPHKLRHTAATLMYKYGDVDIRSLQNILGHENIS 304

Query: 294 TTQIYTNVNSKNGGDWMM 311
           TTQIYT+V++    D + 
Sbjct: 305 TTQIYTHVDNDTLRDAVK 322


>gi|148552940|ref|YP_001260522.1| phage integrase family protein [Sphingomonas wittichii RW1]
 gi|148498130|gb|ABQ66384.1| phage integrase family protein [Sphingomonas wittichii RW1]
          Length = 301

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 87/316 (27%), Positives = 147/316 (46%), Gaps = 27/316 (8%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA--FYTEEKITIQTIRQLSYTEIRA 73
           +    +L+ L  E G ++ TL +Y  D R     L       +   +QT+          
Sbjct: 5   EAIAQFLEMLAAEGGAARNTLLAYGSDLRGASELLGGGLVGADTAGLQTLGG-------E 57

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++      +   S+ R  S ++ F  +L++  I  +     +       +LPR L+   
Sbjct: 58  WMA------LSRTSVARKASVLRRFFAFLEEEGIRRDDPSDALPRPAVQRALPRTLSHGD 111

Query: 134 ALTLVDNVLLHTSHE-TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
              L D +           +  R  A++ LLYG GLR +E +SL    +  D+  L ++G
Sbjct: 112 IERLFDTLEERRRDRHADPLTLRLIALVELLYGSGLRATELVSLPRHALRGDRPFLILRG 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG + R+VP+    R A+ E+    P D     Q  LF       L+     + +R+L  
Sbjct: 172 KGGRERLVPISDRARMAVAEWGAHVPTD-----QPWLFPS-GHGHLSRVRLFQLVRELAA 225

Query: 253 YLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             G+P    + H LRH+FATHLL  G DLR++Q++LGH  ++TTQIYT+VNS +    ++
Sbjct: 226 EAGIPPQRISPHVLRHAFATHLLEGGADLRALQTMLGHADIATTQIYTHVNSAH----LV 281

Query: 312 EIYDQTHPSITQKDKK 327
           E+ +  HP +    ++
Sbjct: 282 ELVNARHPLMDAARRR 297


>gi|299820311|gb|ADJ54321.1| integrase [archaeon enrichment culture clone 1(2010)]
          Length = 282

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 82/308 (26%), Positives = 142/308 (46%), Gaps = 35/308 (11%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +  EL    + +L +L+  RG S+ TL++Y     +F+ +LA      +   T  +++  
Sbjct: 1   MPSELTSNLEGYLGSLKA-RGRSERTLKTYRSILTRFIDYLA------VNGLTPDRVTEQ 53

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +I  F+ +         SL      ++SFLKYL +         +N    K+   LP+ L
Sbjct: 54  DIDRFMLELSKMGWDQNSLFTVAVAVRSFLKYLGRN--------VNYPLPKRPKMLPKYL 105

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
             ++   L+              D     I+ LL   G+R+SE +++   +I  D+ ++R
Sbjct: 106 TREELTRLLGAC----------QDDYEKLIIGLLL-TGVRVSELVNIRVSDIDIDKRSIR 154

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG--IRGKPLNPGVFQRYI 247
           + GKG K R+V     +   +  Y       L  N    LF       + ++    +R +
Sbjct: 155 VVGKGYKERVVFFADWLVPLLKRY-------LRQNKSEWLFPSEINPDQHVHYVTVERIL 207

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +++ +  G+    T HTLRH+FAT  L++G D+R IQ +LGH  LS+TQIYT+V+ +   
Sbjct: 208 KKIVKRAGINKKVTPHTLRHTFATLSLASGLDIREIQELLGHSSLSSTQIYTHVDPQRLK 267

Query: 308 DWMMEIYD 315
               E Y 
Sbjct: 268 QKTDEFYR 275


>gi|302391372|ref|YP_003827192.1| integrase family protein [Acetohalobium arabaticum DSM 5501]
 gi|302203449|gb|ADL12127.1| integrase family protein [Acetohalobium arabaticum DSM 5501]
          Length = 310

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 82/313 (26%), Positives = 145/313 (46%), Gaps = 19/313 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYTEEKITIQ----T 62
           +L+   +++LQ +E+E+G +  T+++YE D   FL +           +E + I+     
Sbjct: 2   KLINLMEDFLQWIEVEKGYADSTIKAYEYDILLFLRWYDGGEIIQGENKEDLKIKLKRIE 61

Query: 63  IRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           +  ++  E+R F+     +    + +  R ++ +KSF  YL K +  T++   ++   KK
Sbjct: 62  LENVTLEELRKFVVYLAQELDYSNTTRCRKIASLKSFWNYLCKVRKLTDNIASDLSLPKK 121

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
             +    L +K+      N L     E      R+ +IL +L   G+R+SE ++L   +I
Sbjct: 122 EPTTEIYLKQKEI-----NQLFVAIDEISRNIIRDKSILAVLLYTGIRVSECINLNLSDI 176

Query: 182 MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
             +   LRI +GKG K R++ +   +   I +Y       L      PLF   RG  LN 
Sbjct: 177 DLESRILRIVKGKGGKSRMIGINKELMPYIKDYLQKRQQVLIEGN--PLFLSERGNRLNK 234

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              Q + ++     GLP   T H  RH+F +HL  NG  L  I+ I GH  L++ Q Y +
Sbjct: 235 RTLQYHFKRWVEEAGLPDEVTVHKCRHTFLSHLCQNGASLAEIKQISGHKNLASLQRYLH 294

Query: 301 VNSKNGGDWMMEI 313
            + K     + ++
Sbjct: 295 NDQKRLNKIVNKV 307


>gi|302878649|ref|YP_003847213.1| integrase family protein [Gallionella capsiferriformans ES-2]
 gi|302581438|gb|ADL55449.1| integrase family protein [Gallionella capsiferriformans ES-2]
          Length = 298

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 77/305 (25%), Positives = 139/305 (45%), Gaps = 13/305 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L    Q++L +      LS+ TL++Y  D   F       T        +  L+  ++R 
Sbjct: 3   LQDACQSFLSHCRSAVSLSEHTLRAYTFDLEDFQNHAQHET-------NLSLLNKDDLRK 55

Query: 74  FISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-RNLKKSNSLPRALNE 131
           FI   R + K+ + ++KR ++ +K   +++++  + + +   N+   ++    LPRAL  
Sbjct: 56  FIRHLREERKLKEITIKRRIACLKLLFRWVQQENMISINPFDNLNERIRLPKRLPRALGS 115

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           ++   L   + L  + +         A   LL   G+R+ E + +  ++++    +L+IQ
Sbjct: 116 EEIKLLTGAINLEATDKEFQEFVTGIA-TKLLLTTGIRVGELVKIDIEDLVLPDCSLKIQ 174

Query: 192 GKGDKIRIVPLL-PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           GKG++ R+V L  P + +AI  Y  +         +  LF    G P      +  +  L
Sbjct: 175 GKGNRQRLVYLFEPKLNQAIARYLTIRLTRATETKK--LFITEAGIPFTTQKTRILLGDL 232

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+    T H LRH+ AT LL  G D+R +Q +LGH  +STT+IYT+V        +
Sbjct: 233 ASKAGIERRITPHMLRHTTATQLLEAGLDIRYVQKLLGHQSISTTEIYTHVTDHGLRTAL 292

Query: 311 MEIYD 315
              Y 
Sbjct: 293 KRTYR 297


>gi|221218583|ref|YP_002527541.1| class 1 integron integrase protein IntI1 [Escherichia coli]
 gi|261888715|ref|YP_003264403.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|215252911|gb|ACJ63570.1| class 1 integron integrase protein IntI1 [Escherichia coli]
 gi|261857302|emb|CBA11369.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|312949085|gb|ADR29911.1| class 1 integron integrase protein IntI1 [Escherichia coli O83:H1
           str. NRG 857C]
          Length = 372

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 139/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|42525368|gb|AAS18383.1| Int1 DNA integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 372

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 139/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|332522659|ref|ZP_08398911.1| phage integrase, N-terminal SAM domain protein [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332313923|gb|EGJ26908.1| phage integrase, N-terminal SAM domain protein [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 295

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 129/296 (43%), Gaps = 26/296 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L   +  + LS  TL++Y+ D  QF                     +  + ++I     
Sbjct: 9   YLDYCKTHKRLSSHTLRAYKNDLIQFCNS-----------------DHDCVVSYIEYLTN 51

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLV- 138
             I   +L+R ++ +K F  YL  + I +E+    +R   +   +LP+ +       L  
Sbjct: 52  SAIKTNTLRRKIASLKVFYSYLMTQNIISENPFNQLRFQFRTEKTLPKIIPHNILKNLYA 111

Query: 139 ---DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
                V+   ++  +    RN  I+ +L   G+RISE   +  +NI     TL I GKG 
Sbjct: 112 YLKQKVITSKTNFQRQKAERNLLIVSILLSTGIRISELCHIQIKNINLQNQTLHIFGKGK 171

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYL 254
           K RI+ L       +L+ Y     +        LF G     PL     +  ++ +R+ +
Sbjct: 172 KERIIFLGDETTVLLLKTYLANYCN---QSDKYLFPGKFSQNPLTEQSVRLVLKTVRKQM 228

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            L  + T H  RHSFAT LL N  D+R IQ ILGH  +S TQIYT+V+     + +
Sbjct: 229 NLATTITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISITQIYTHVSQSKQKEIL 284


>gi|260752898|ref|YP_003225791.1| integrase family protein [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258552261|gb|ACV75207.1| integrase family protein [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 307

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 133/304 (43%), Gaps = 22/304 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+ +  E G S  TL +Y  D R     L      K     +  L             
Sbjct: 19  RFLEMMAAESGSSPNTLMAYGSDLRLASQQLENGLV-KADTDDLASLGVVW--------- 68

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  ++ R  + +K F ++L +  + T+    ++ +   S +LP+ L   +   L  
Sbjct: 69  -SDYARNTVARKSAALKHFYRFLLEEGMRTDDPSSSLPHAGISRNLPKILTTAEVERLFV 127

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            +             R  A++ LLYG GLR SE +SL  Q  +  Q  L ++GKG + R+
Sbjct: 128 TLQQRYDRAATPSTLRLMALVELLYGSGLRASELVSLPKQAFIRKQPFLILKGKGGRERL 187

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL- 258
           VP+      A+  +             L LF   +   ++     + I++L     LP  
Sbjct: 188 VPISDRATDAVAAWLVHV-----PEKSLWLFPSGK-GHISRIRLYQLIKELAVEADLPRE 241

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FATHLL  G DLR +Q +LGH  +STTQIYT+V+S+     ++E+ +  H
Sbjct: 242 RVSPHVLRHAFATHLLEGGADLRVLQLLLGHADISTTQIYTHVDSQ----KLVELVNSRH 297

Query: 319 PSIT 322
           P + 
Sbjct: 298 PLVD 301


>gi|317056716|ref|YP_004105183.1| integrase family protein [Ruminococcus albus 7]
 gi|315448985|gb|ADU22549.1| integrase family protein [Ruminococcus albus 7]
          Length = 335

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 72/329 (21%), Positives = 138/329 (41%), Gaps = 36/329 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-----------------IQT 62
           ++L  +++ +     T+++Y  D R FL +L    ++  T                 +  
Sbjct: 15  DFLTYMQLVKARGDRTVEAYYIDLRSFLRYLRIKHKDIDTNNVPFEEMTISEVPFEYVSK 74

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKK 121
           +R +   +   +++  R+  +  R   R  S +K F  Y   K+       +  +   K 
Sbjct: 75  LRLIDAYDYLKWLADERSNSVKTR--ARKTSALKQFYSYLYLKKNSIPSDPLTQLELPKL 132

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
             +LP+ L+ + A  L+ ++              +  ++ L   CG+R+SE   L   + 
Sbjct: 133 PKTLPKYLSLEDAQRLLSSIESDHFER-------DYCMITLFLNCGMRLSELCGLDIGDF 185

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
             +  T+R+ GKG K R+V +  +   A+  Y  +         +  LF   R   ++  
Sbjct: 186 SFESGTIRLFGKGQKERVVYINQACIAALKAYLPIR--LSVQTQEKALFLSNRNTRISRR 243

Query: 242 VFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYT 299
             Q  + +  +  GL  L  T H LRH+ AT +   G  D   ++ ILGH  L+TT+IYT
Sbjct: 244 RTQEIVEESLKKAGLGNLGITTHKLRHTAATLMYQYGNVDTLVLKDILGHESLATTEIYT 303

Query: 300 NVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           +++++N          + +P   QK  K+
Sbjct: 304 HLSNENLKQA-----AEANPLSGQKANKS 327


>gi|241761139|ref|ZP_04759228.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241374758|gb|EER64219.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 307

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 133/304 (43%), Gaps = 22/304 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+ +  E G S  TL +Y  D R     L      K     +  L             
Sbjct: 19  RFLEMMAAESGSSPNTLMAYGSDLRLASQQLENGLV-KADTDDLASLGVVW--------- 68

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  ++ R  + +K F ++L +  + T+    ++ +   S +LP+ L   +   L  
Sbjct: 69  -SDYARNTVARKSAALKHFYRFLLEEGMRTDDPSSSLPHAGISRNLPKILTTAEVERLFV 127

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            +             R  A++ LLYG GLR SE +SL  Q  +  Q  L ++GKG + R+
Sbjct: 128 TLQQRYERAATPSTLRLMALVELLYGSGLRASELVSLPKQAFIRKQPFLILKGKGGRERL 187

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL- 258
           VP+      A+  +             L LF   +   ++     + I++L     LP  
Sbjct: 188 VPISDRATDAVAAWLVHV-----PEKSLWLFPSGK-GHISRIRLYQLIKELAVEADLPRE 241

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FATHLL  G DLR +Q +LGH  +STTQIYT+V+S+     ++E+ +  H
Sbjct: 242 RVSPHVLRHAFATHLLEGGADLRVLQLLLGHADISTTQIYTHVDSQ----KLVELVNSRH 297

Query: 319 PSIT 322
           P + 
Sbjct: 298 PLVD 301


>gi|299538025|ref|ZP_07051311.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1]
 gi|298726607|gb|EFI67196.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1]
          Length = 276

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 78/289 (26%), Positives = 125/289 (43%), Gaps = 30/289 (10%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            LS  T++ Y     QF  F          ++   ++  T+IRA+++    + +  RS+ 
Sbjct: 16  RLSPETIRGYRIALTQFFTFC---------VKGFGEVKATDIRAWLASLEEKGLKPRSIH 66

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             L+ +KSF  Y  +     ++  L +R  K  +SLP  L+ ++   L          E 
Sbjct: 67  AKLAALKSFYNYCMEENQVKKNPTLTVRAPKIDDSLPYYLSRREVALL---------QEL 117

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRK 208
              D RN AI+  LY  G+RISE L +  +++  D   + I+ GKG+K R V       +
Sbjct: 118 TRHDPRNRAIVETLYTTGVRISELLQIKLEDVKWDTRQIWIRKGKGNKERFVLFSYDCLE 177

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            +  Y      +        LF    GKPL+    ++  +     LG       HTLRH+
Sbjct: 178 RLNTYLAHRKRE-----SAYLFSNYWGKPLSHVFVEQQFQAFSEELG--FRVRPHTLRHT 230

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           FA HL         IQ +LGH  +++T+IYT +          + YDQ 
Sbjct: 231 FAAHLAEKNMPQSYIQELLGHVNINSTRIYTRL----MEHARKKKYDQY 275


>gi|257413888|ref|ZP_04744580.2| putative tyrosine recombinase XerD [Roseburia intestinalis L1-82]
 gi|257201913|gb|EEV00198.1| putative tyrosine recombinase XerD [Roseburia intestinalis L1-82]
          Length = 334

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 76/321 (23%), Positives = 141/321 (43%), Gaps = 23/321 (7%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E+ +  L +E   +L   + ++ L   T+++Y+ D  QF+  +     +K          
Sbjct: 19  EVFAMLLKEEINKYLNYCKFQKELKDKTIKAYKADLEQFITVIGENNPDK---------- 68

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLP 126
              + A++     +    +++KR ++ +K+   YL++ ++   +    ++   ++   LP
Sbjct: 69  -EVLNAYLVYLH-RMYKQKTVKRKIASVKALFHYLEEEELIEINPFHKVKTKFREEVILP 126

Query: 127 RALNEKQALTLV-----DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           + +       L+     +  +   S   K I  R+ A++  L+  GLRISE   L  + +
Sbjct: 127 KIIPRDIIEQLLNHLYKERSIKEYSEWRKKIILRDIAVVETLFSTGLRISELCHLQNKYV 186

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
                 L IQGKG K R + +  +   +IL  Y     D  +  Q   F    G  L+  
Sbjct: 187 DLKNGVLCIQGKGGKERYLQIGNNDVLSILNAYKKSFED-EIKKQGYFFVNRYGNALSEQ 245

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             +  I +    +   ++ T H  RHSFAT+L+    ++R IQ +LGH  ++TTQIYT V
Sbjct: 246 SARSMIHKYAGEIQADINITPHMFRHSFATYLMEEDVNIRYIQKMLGHASITTTQIYTYV 305

Query: 302 NSKNGGDWMMEIYDQTHPSIT 322
            ++       EI    HP   
Sbjct: 306 TTEKE----KEILQTRHPRNK 322


>gi|56551494|ref|YP_162333.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56543068|gb|AAV89222.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 307

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 133/304 (43%), Gaps = 22/304 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+ +  E G S  TL +Y  D R     L      K     +  L             
Sbjct: 19  RFLEMMAAESGSSPNTLMAYGSDLRLASQQLENGLV-KADTDDLASLGVVW--------- 68

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  ++ R  + +K F ++L +  + T+    ++ +   S +LP+ L   +   L  
Sbjct: 69  -SDYARNTVARKSAALKHFYRFLLEEGMRTDDPSSSLPHAGISRNLPKILTTVEVERLFV 127

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            +             R  A++ LLYG GLR SE +SL  Q  +  Q  L ++GKG + R+
Sbjct: 128 TLQQRYERAATPSTLRLIALVELLYGSGLRASELVSLPKQAFIRKQPFLILKGKGGRERL 187

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL- 258
           VP+      A+  +             L LF   +   ++     + I++L     LP  
Sbjct: 188 VPISDRATDAVAAWLVHV-----PEKSLWLFPSGK-GHISRIRLYQLIKELAVEADLPRE 241

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRH+FATHLL  G DLR +Q +LGH  +STTQIYT+V+S+     ++E+ +  H
Sbjct: 242 RVSPHVLRHAFATHLLEGGADLRVLQLLLGHADISTTQIYTHVDSQ----KLVELVNSRH 297

Query: 319 PSIT 322
           P + 
Sbjct: 298 PLVD 301


>gi|15004784|ref|NP_149244.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum
           ATCC 824]
 gi|14994396|gb|AAK76826.1|AE001438_79 Site-Specific Recombinase, Xerd [Clostridium acetobutylicum ATCC
           824]
          Length = 323

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 86/324 (26%), Positives = 142/324 (43%), Gaps = 31/324 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE------------KITIQTIRQLSY 68
           +L  +   +G SK T   Y+ D    L ++     +             I    I+ +S 
Sbjct: 8   FLIYMTNIKGKSKRTRNEYKNDLILMLKYIKVIKYDINTNGIENVDISDIDNDFIKAISL 67

Query: 69  TEIRAFISKRRTQKI-GDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLP 126
            ++  F+     ++  G  S  R ++ I+SF  Y   K+KI   +    +   K     P
Sbjct: 68  EDLYIFLEYCEDERRNGAYSRARKVAAIRSFFNYLTTKKKILDYNPAQELEKPKLPKRNP 127

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             L   QA T +  + ++          RN+ I+ L   CG+R+SE  ++   +I +D  
Sbjct: 128 VYLTIGQANTFLSGIKMNK------HYYRNTCIVTLFLNCGMRVSELCNININSIKND-- 179

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            + I GKGDK R V L      AI +Y         N+  Q  LF   +G  ++    + 
Sbjct: 180 MISIIGKGDKERTVYLNDMCIDAINKYIEKERSLQKNIKCQQALFISQKGTRISVRTIEN 239

Query: 246 YIRQLRR--YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            ++++     L +    T H LRH+FAT +   G D+ S+Q +LGH  +STTQIYT+V  
Sbjct: 240 LVKKINEDSKLNINK-LTPHKLRHTFATTMYQAGTDIISLQQLLGHSNVSTTQIYTHVTD 298

Query: 304 KNGGDWMMEIYDQTHPSITQKDKK 327
               D + E  ++ +P   Q +KK
Sbjct: 299 ----DRLREATNK-NPFNIQFNKK 317


>gi|325511227|gb|ADZ22862.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum
           EA 2018]
          Length = 326

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 86/324 (26%), Positives = 142/324 (43%), Gaps = 31/324 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE------------KITIQTIRQLSY 68
           +L  +   +G SK T   Y+ D    L ++     +             I    I+ +S 
Sbjct: 11  FLIYMTNIKGKSKRTRNEYKNDLILMLKYIKVIKYDINTNGIENVDISDIDNDFIKAISL 70

Query: 69  TEIRAFISKRRTQKI-GDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLP 126
            ++  F+     ++  G  S  R ++ I+SF  Y   K+KI   +    +   K     P
Sbjct: 71  EDLYIFLEYCEDERRNGAYSRARKVAAIRSFFNYLTTKKKILDYNPAQELEKPKLPKRNP 130

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             L   QA T +  + ++          RN+ I+ L   CG+R+SE  ++   +I +D  
Sbjct: 131 VYLTIGQANTFLSGIKMNK------HYYRNTCIVTLFLNCGMRVSELCNININSIKND-- 182

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            + I GKGDK R V L      AI +Y         N+  Q  LF   +G  ++    + 
Sbjct: 183 MISIIGKGDKERTVYLNDMCIDAINKYIEKERSLQKNIKCQQALFISQKGTRISVRTIEN 242

Query: 246 YIRQLRR--YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            ++++     L +    T H LRH+FAT +   G D+ S+Q +LGH  +STTQIYT+V  
Sbjct: 243 LVKKINEDSKLNINK-LTPHKLRHTFATTMYQAGTDIISLQQLLGHSNVSTTQIYTHVTD 301

Query: 304 KNGGDWMMEIYDQTHPSITQKDKK 327
               D + E  ++ +P   Q +KK
Sbjct: 302 ----DRLREATNK-NPFNIQFNKK 320


>gi|77164210|ref|YP_342735.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
 gi|76882524|gb|ABA57205.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
          Length = 310

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 80/320 (25%), Positives = 146/320 (45%), Gaps = 25/320 (7%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E  + +  + R+++L +L   +G S+ T  +Y  D   +  +L   +      +  RQ +
Sbjct: 2   EKKTADFWQARKDFLAHLHYAKGYSQGTCYAYHSDLGIWGRWLEEAS------KDWRQAT 55

Query: 68  YTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           + +   F++   R +      + R  S + SF K+  K  +     I      K+   +P
Sbjct: 56  HLDTEQFVAWQMRKRGTKAHIVARRSSCLGSFYKWAMKNALVESDPIYLADKPKRPYRIP 115

Query: 127 RALNEKQ----------ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             L +++             L +N+   T    K +  R   +  L+   GLRISEAL++
Sbjct: 116 VWLEKEEQRAFQEAVQRVEDLPENIFGRTQEHIKAVRRRYDVLFGLILNSGLRISEALAV 175

Query: 177 TPQNIMDDQST---LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
             +++         +RI GKG++ R+VPL  +  + +  +      +  +  + P     
Sbjct: 176 KVRDVRMVNGVAKSVRIIGKGNRERLVPLPEAFGQVLGAWLQGRGGEDFVFAKAP----- 230

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
             KP  P   + Y+R+L    G+    T H LRH++AT LL +G +L  IQ++LGH  LS
Sbjct: 231 GEKPPGPHAVRAYLRRLIERAGIDKPVTPHKLRHTYATRLLESGAELVDIQALLGHVDLS 290

Query: 294 TTQIYTNVNSKNGGDWMMEI 313
           TTQIYT+V+ +     + ++
Sbjct: 291 TTQIYTHVSEERMAGIVAKL 310


>gi|310778330|ref|YP_003966663.1| integrase family protein [Ilyobacter polytropus DSM 2926]
 gi|309747653|gb|ADO82315.1| integrase family protein [Ilyobacter polytropus DSM 2926]
          Length = 297

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 134/291 (46%), Gaps = 11/291 (3%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +  F L K  ++++   E   G S  T++S++ D  Q   +L+    +K  I   + +  
Sbjct: 1   MEPFLLEKLIKDFIYFEEFGDGKSLNTIKSFKKDLGQLRDYLS----KKENINNPKDIKE 56

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R F+ + + + IG RSL R +S +++F KYLK +    ++  + +        LP  
Sbjct: 57  MALRGFLVELQKENIGKRSLNRKISSLRTFFKYLKNQGYIEKNPTILLTGPAFKADLPEI 116

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L +++   + + + +  ++       R+  I+ LLY  G+R SE LSL       ++  L
Sbjct: 117 LTKEEIDRIREVIDIEKTN-----GIRDRLIVELLYSSGIRTSELLSLGESLFDLEKRQL 171

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYI 247
           R+ G G + RIV      R+    Y +              LF    G  L+    +R I
Sbjct: 172 RVTG-GKQPRIVFFSERTREYFKRYVESKKKKYRAKYTADILFVNGSGTRLSDRSLRRII 230

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            +  +   +    + HT RH+F  ++L++G  L  +Q ++GH  + +T+IY
Sbjct: 231 ERYAKKAEIQKEISPHTFRHTFGVYMLTHGMGLMHLQELMGHVSVESTKIY 281


>gi|160947529|ref|ZP_02094696.1| hypothetical protein PEPMIC_01463 [Parvimonas micra ATCC 33270]
 gi|158446663|gb|EDP23658.1| hypothetical protein PEPMIC_01463 [Parvimonas micra ATCC 33270]
          Length = 324

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 83/314 (26%), Positives = 145/314 (46%), Gaps = 27/314 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE---------------KITIQT 62
             ++L  L   +G S LT++ Y  D ++FL F+    +                 I  + 
Sbjct: 11  LDDYLNYLLTIKGRSNLTVKEYYYDLKRFLKFIIMRKKLFGYNLNSDINSVSILSINKRD 70

Query: 63  IRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLK 120
           I  +  +++ A+IS   +      ++  R +S IKS+ KYL    ++  ++    +   K
Sbjct: 71  ILDIDISDLHAYISFCDSNYNDSTKTKARKISAIKSWFKYLHNTVELINKNPAEKLELPK 130

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                P  L   ++  +++++      + ++   R+  I+ +   CGLRISE   +  ++
Sbjct: 131 LQKRNPVYLTLSESEKVINSI---KEEKNEFNRTRDLCIILIFLTCGLRISELTGINIES 187

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I DD+  L + GKG+K RIV L  +   AI  Y  L P   N      LF     K ++ 
Sbjct: 188 IKDDK--LSVIGKGNKERIVFLNENCIYAIKSYLQLRPCTKNT---TALFLSSHKKRISN 242

Query: 241 GVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
              Q  +++     GL     T H LRH+ AT +   G  D+R+IQSILGH  ++TTQIY
Sbjct: 243 RSIQLRLKKYILLAGLDPKIYTPHKLRHTAATLMYKYGDVDIRTIQSILGHTSVATTQIY 302

Query: 299 TNVNSKNGGDWMME 312
           T+++  +    + +
Sbjct: 303 THLDDDDIKKGISK 316


>gi|219852288|ref|YP_002466720.1| integrase family protein [Methanosphaerula palustris E1-9c]
 gi|219546547|gb|ACL16997.1| integrase family protein [Methanosphaerula palustris E1-9c]
          Length = 292

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 78/315 (24%), Positives = 137/315 (43%), Gaps = 34/315 (10%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE--EKITIQTIRQLSYTEI 71
            ++    +   +++ R  S+ T+QSY    R F  +L       +++     R+L    I
Sbjct: 6   FVEWIDRYHSYMQM-RNYSEKTIQSYIRVVRLFGAYLIDRGATFDQVGGADDRRL----I 60

Query: 72  RAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
             ++S   +      ++L R +S + SF ++L  +     + +  +   K      R L 
Sbjct: 61  TGYLSALSQEHGYSAKTLHRIISTLSSFYRFLYAQGAVAVNPVTGIDRPKIKRQELRYLK 120

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            +Q L L++++             R+  ++ ++Y  G+R+SE   ++ ++I  D  T+RI
Sbjct: 121 HRQVLKLIESM----------PSVRDQLVVRMIYATGVRVSELCGISIEHIDFDDLTIRI 170

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +GKGDKIR V +     + +  Y           I  P F G +G PL+P   Q      
Sbjct: 171 RGKGDKIRTVFIDEETCRLMEIY-------AGDRIFGPFFVGQQGHPLSPRTVQHLFEVY 223

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                 P   T HT+RHS+A+ L     +LR +Q  LGH  + TT+IY + +     D  
Sbjct: 224 A-----PPGVTPHTIRHSYASELYKRSKNLRVVQENLGHSSIKTTEIYLHTD----LDER 274

Query: 311 MEIYDQTHPSITQKD 325
             +Y    P   Q D
Sbjct: 275 QGVYRTYFPLSKQDD 289


>gi|83310025|ref|YP_420289.1| integrase [Magnetospirillum magneticum AMB-1]
 gi|82944866|dbj|BAE49730.1| Integrase [Magnetospirillum magneticum AMB-1]
          Length = 285

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 80/293 (27%), Positives = 129/293 (44%), Gaps = 31/293 (10%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            E+   R+  ++++ + R LS  T +SY     +F  F           ++  +L + ++
Sbjct: 2   AEMSPLRRRMIEDMTV-RNLSPATQRSYLHAVSKFSRFFN---------RSPDRLDHDDV 51

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           R +     +Q I   SL + ++ ++ F     +     E     +   ++   LP  L+ 
Sbjct: 52  RTWQVHLVSQGISWASLNQFVAALRFFYGVTLRCPEIPE----RIVYARQPRRLPIVLSA 107

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI- 190
            + +  ++ V             +N   L   Y  GLR+SE ++L   +I   +  +R+ 
Sbjct: 108 DEVVRFLEAV----------PSLKNRTALTTAYATGLRVSEVVALKLADIDSGRMVIRVE 157

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           QGKG K R V L   +   +  Y+ L         +  LF G   KP+ P V     R  
Sbjct: 158 QGKGRKDRYVMLSAQLLGILRTYWPLA------RPEHWLFPGREDKPIEPTVLNSACRSA 211

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
               G+    T HTLRHSFATHLL  G D+R IQ +LGH  LSTT  YT V++
Sbjct: 212 CVAAGIDKRVTVHTLRHSFATHLLEAGTDIRIIQVLLGHNNLSTTARYTQVSN 264


>gi|118511775|emb|CAD20932.2| IntI1 integrase [Salmonella enterica subsp. enterica serovar
           Infantis]
          Length = 337

 Score =  195 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 139/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVNWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|213155654|ref|YP_002317699.1| IntI1 integrase [Acinetobacter baumannii AB0057]
 gi|301347157|ref|ZP_07227898.1| IntI1 integrase [Acinetobacter baumannii AB056]
 gi|213054814|gb|ACJ39716.1| IntI1 integrase [Acinetobacter baumannii AB0057]
          Length = 344

 Score =  195 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 139/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVNWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|317133822|ref|YP_004089733.1| integrase family protein [Ruminococcus albus 7]
 gi|315450284|gb|ADU23847.1| integrase family protein [Ruminococcus albus 7]
          Length = 326

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 75/310 (24%), Positives = 138/310 (44%), Gaps = 24/310 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-------------EKITIQTIR 64
            +++L NL + +    LT   Y  D R FL +L    +               + I+ I 
Sbjct: 13  LEDFLINLSVIKNRGDLTSSEYYLDIRTFLRYLKVKNKMVSAETKFNDITISDVPIEMIE 72

Query: 65  QLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKS 122
             +  +   ++   + ++  G  +  R  + +K F  YL  + ++  + N++++      
Sbjct: 73  NFTKKDAYLYMVWLKDERQNGASARARKTTSLKQFYDYLANKAQLIPKDNMVSLEVPHVK 132

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            +LP+ L+  +   L+ ++    +         +  I+ L   CG+R+SE   +   +I 
Sbjct: 133 RALPKYLSLDEVQKLLSSIRTKNTER-------DYCIITLFLNCGMRLSELCGININDIS 185

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
            +  TLR+ GKG K RI+ L  +   AI +Y            +  LF   R   L+   
Sbjct: 186 FENKTLRLMGKGKKERIITLNNNCLDAIEKYLPYRKNYEMAQNEKALFLSSRKNRLSRRR 245

Query: 243 FQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLSTTQIYTN 300
            Q+ I +     GL     T H LRH+ AT +  +NGGD+ +++ ILGH   +TT+IYT+
Sbjct: 246 VQKIIEECIMDAGLKNTGVTTHKLRHTAATLMYNNNGGDILAVKEILGHESTATTEIYTH 305

Query: 301 VNSKNGGDWM 310
           + S+   + M
Sbjct: 306 LGSEKMKNTM 315


>gi|182418976|ref|ZP_02950232.1| tyrosine recombinase XerC [Clostridium butyricum 5521]
 gi|237668918|ref|ZP_04528902.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182377259|gb|EDT74827.1| tyrosine recombinase XerC [Clostridium butyricum 5521]
 gi|237657266|gb|EEP54822.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 334

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 69/312 (22%), Positives = 141/312 (45%), Gaps = 30/312 (9%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
            ++  +L  +   +LQ  ++E   S+ TL +Y    R+F  F+          + +  ++
Sbjct: 48  ALIKSDLEDKILLYLQVRKLE-NYSQATLSNYMYTLRKFASFIN---------KPVGTIT 97

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
             +IR +++   T+ +   ++   ++  K+F ++L++ ++  ++   ++   +    L +
Sbjct: 98  KNDIRYYMAINFTE-LKPSTVNNKIACFKAFFQWLEQEEMIPKNPARSLDETRLPKRLRK 156

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           +L  ++   +              +D R+ A++  L   G R+SE +S   +++  + +T
Sbjct: 157 SLTAEELERV----------RIACVDNRDRALVEFLVATGCRVSEVVSCNIKDLDLNDNT 206

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQR 245
           L++ GKGDK R V      +  I +Y +    D   + +  LF   +     ++    + 
Sbjct: 207 LKVIGKGDKERTVCFTDKAKLYIRKYIEE---DRQKDNEDALFVSTKFPYNRISRRSIEV 263

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            I ++     L      H LRH+ AT  L +G D+  IQS+LGH   STTQIY     +N
Sbjct: 264 AISKIGIRANLGKPLFPHLLRHTMATLSLQSGADITIIQSLLGHTTPSTTQIYA----EN 319

Query: 306 GGDWMMEIYDQT 317
             D +   Y Q 
Sbjct: 320 SLDNLKHEYKQH 331


>gi|7339576|emb|CAB82887.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 334

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 139/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVNWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  +V  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPEAVAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|332295804|ref|YP_004437727.1| Tyrosine recombinase xerC [Thermodesulfobium narugense DSM 14796]
 gi|332178907|gb|AEE14596.1| Tyrosine recombinase xerC [Thermodesulfobium narugense DSM 14796]
          Length = 298

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 79/302 (26%), Positives = 141/302 (46%), Gaps = 13/302 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            +  ++L  L+  +  S  T+++Y  D   +  FL   ++  +    I +L+Y  +   I
Sbjct: 6   DQILDFLDYLQFSKLCSNNTIRAYRSDLISWFEFLKN-SKNNLNELEITKLTYDWL---I 61

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
             + ++ +   S+ R +S +KSFL YL K  +      L ++N KK   LP+ LN     
Sbjct: 62  EDQNSKLLKKSSVSRKISAVKSFLNYLYKFNVINNKLSLTLKNPKKDRILPKYLNYSDVA 121

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            +++     ++    +   RNS I+ LL+  G+RISE  ++  ++I  D++ +R+ GKG+
Sbjct: 122 DVINKNFTSSN----FYSFRNSLIILLLFNTGIRISELKNIKLEDINLDRNEIRVIGKGN 177

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYL 254
           K R+V      +  + +Y               LF       ++  + +  +    +   
Sbjct: 178 KERVVFFTNFTKNFLKQYITERLKL--KTKCRYLFISRLKSRISERMIRYIVSNTWKTQT 235

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G   S T H LRHS AT LL+ G +L+ IQ ILGH  ++TT IY  +  K       +  
Sbjct: 236 G--KSITPHQLRHSLATFLLNQGVELKYIQEILGHENINTTNIYAKLTEKTIKKEYYKSL 293

Query: 315 DQ 316
           D+
Sbjct: 294 DK 295


>gi|149928222|ref|ZP_01916466.1| Tyrosine recombinase XerC [Limnobacter sp. MED105]
 gi|149823028|gb|EDM82269.1| Tyrosine recombinase XerC [Limnobacter sp. MED105]
          Length = 298

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 84/315 (26%), Positives = 141/315 (44%), Gaps = 26/315 (8%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           + E     Q +L  L +ER  S  ++++ + D               +      Q++ T 
Sbjct: 7   TPEHSILIQRYLDFLRLERRYSDHSVKAAQRDL-------------SLIDTPPGQVTTTA 53

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +++ +++R        SL R  S  + F KYL    I      L ++  K + SLP+A+ 
Sbjct: 54  LKSILAQRHAAGAAPASLARLASSWRGFFKYLLNNGIVEVDPTLGLKTPKLTRSLPKAVG 113

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
                 L+           ++  A+   ++ LLY  GLRISEAL+L  + +    + LR+
Sbjct: 114 VDPLAALL-----AKPLPQEFRFAQAHVLIELLYCTGLRISEALTLQAEALN-GSTELRV 167

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYI 247
            GKG+K RIVP++ +++  + E+ +     L          LF   +G  L     QR I
Sbjct: 168 VGKGNKARIVPVVDALQARLREFVEPRQIHLLKLGKGQGASLFVSAKGLALTARQAQRDI 227

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                  GL      H LRHSF +HLL    +LR++Q +LGH  +++TQ+YT ++     
Sbjct: 228 ADHAAKCGLGQHLHPHMLRHSFGSHLLQGTQNLRAVQELLGHASIASTQVYTALDF---- 283

Query: 308 DWMMEIYDQTHPSIT 322
           D +  +YD   P   
Sbjct: 284 DHLSSVYDNAFPRAK 298


>gi|330467056|ref|YP_004404799.1| site-specific tyrosine recombinase XerD [Verrucosispora maris
           AB-18-032]
 gi|328810027|gb|AEB44199.1| site-specific tyrosine recombinase XerD [Verrucosispora maris
           AB-18-032]
          Length = 290

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 78/297 (26%), Positives = 132/297 (44%), Gaps = 21/297 (7%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG--- 94
           +Y  D  ++L  LA        +  +  +   EI   +++ R    G   L  S +    
Sbjct: 2   AYRRDLDRYLNSLAA-----AGVSDLAAVPAGEIERHLARLRAGDDGHPPLAASSAARAA 56

Query: 95  --IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN-VLLHTSHETKW 151
             ++   ++  +  +       ++R       LPRAL+    + L+D    +  + +T  
Sbjct: 57  SAVRGLHRFALREGLAAADPSRDVRPPTPPRRLPRALSLDDVVRLLDAAGPVQAAGDTAP 116

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           +  R+ A+L  LYG G RISE + L   ++    + ++++GKG + R+VP+     +A+ 
Sbjct: 117 LALRDRALLEFLYGTGARISETVGLAVDDVDLTDAVVQLRGKGGRDRLVPIGGYAMQALG 176

Query: 212 EYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS----TTAHTL 265
            Y       L         +F   RG PL        +R+      LP+      + HTL
Sbjct: 177 AYLVRARPGLVAAGRGTPRVFLNSRGGPLTRQGAWMILRRAAERAALPVDGPQAVSPHTL 236

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           RHS+ATHLL  G D+R +Q +LGH  ++TTQ+YT V      D + E+Y   HP   
Sbjct: 237 RHSYATHLLDGGADVRVVQELLGHASVTTTQVYTLVT----VDRLREVYATAHPRAR 289


>gi|291535839|emb|CBL08951.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
          Length = 312

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 75/315 (23%), Positives = 138/315 (43%), Gaps = 23/315 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +E   +L   + ++ L   T+++Y+ D  QF+  +     +K             + A
Sbjct: 3   LKEEINKYLNYCKFQKELKDKTIKAYKADLEQFITVIGENNPDK-----------EVLNA 51

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEK 132
           ++     +    +++KR ++ +K+   YL++ ++   +    ++   ++   LP+ +   
Sbjct: 52  YLVYLH-RMYKQKTVKRKIASVKALFHYLEEEELIEINPFHKVKTKFREEVILPKIIPRD 110

Query: 133 QALTLV-----DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
               L+     +  +   S   K I  R+ A++  L+  GLRISE   L  + +      
Sbjct: 111 IIEQLLNHLYKERSIKEYSEWRKKIILRDIAVVETLFSTGLRISELCHLQNKYVDLKNGV 170

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           L IQGKG K R + +  +   +IL  Y     D  +  Q   F    G  L+    +  I
Sbjct: 171 LCIQGKGGKERYLQIGNNDVLSILNAYKKSFED-EIKKQGYFFVNRYGNALSEQSARSMI 229

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +    +   ++ T H  RHSFAT+L+    ++R IQ +LGH  ++TTQIYT V ++   
Sbjct: 230 HKYAGEIQADINITPHMFRHSFATYLMEEDVNIRYIQKMLGHASITTTQIYTYVTTEKE- 288

Query: 308 DWMMEIYDQTHPSIT 322
               EI    HP   
Sbjct: 289 ---KEILQTRHPRNK 300


>gi|170745401|ref|YP_001766858.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
 gi|170659002|gb|ACB28056.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
          Length = 305

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 132/292 (45%), Gaps = 19/292 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +  + +L++ ++ER LS  TL +Y  D  + +          +T   +  ++Y +   
Sbjct: 3   LNEAGEAYLRHCQLERHLSSNTLAAYRQDISELIAHFGLIEVVAVTGDAL--VTYAD--- 57

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEK 132
            +SKRR   +   ++KR L   +   ++L +    +          ++  + LPR L   
Sbjct: 58  HLSKRR--GLAPATVKRRLVCARGLFRWLTRTGALSADPFGGTEIRVRIPDRLPRCLATD 115

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L       ++               LL+  G+R+ E +S+   +I  D+  +RI G
Sbjct: 116 EMARLARAADDASATT--------RLATLLLFATGMRVGELVSVRLADIDLDRDVIRIVG 167

Query: 193 KGDKIRIVPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG++ R V +   S++ AI EY      D   + +       R   L     +  +R+L 
Sbjct: 168 KGNRQRQVVIPNESLKDAIREYARTYHADDRASERFLREPNGRS--LTTAAIRTRLRRLA 225

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +  GL  + T H LRH+ AT LL  G D+R +Q +LGH  + TTQIYT+V+ 
Sbjct: 226 KAAGLVRTVTPHMLRHTAATELLEAGVDIRFVQRLLGHRSILTTQIYTHVSD 277


>gi|10955228|ref|NP_044257.1| hypothetical protein R751p48 [Enterobacter aerogenes]
 gi|32470064|ref|NP_863006.1| hypothetical protein p165897_094 [Escherichia coli]
 gi|53793938|ref|YP_112391.1| DNA integrase [uncultured bacterium]
 gi|60115543|ref|YP_209334.1| hypothetical protein SC029 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|134047152|ref|YP_001102016.1| integrase IntI1 for transposon Tn21 [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|152973776|ref|YP_001338815.1| integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|157412100|ref|YP_001481441.1| IntI1 integrase [Escherichia coli APEC O1]
 gi|161867947|ref|YP_001598128.1| hypothetical protein pOU7519_85 [Salmonella enterica subsp.
           enterica serovar Choleraesuis]
 gi|168239505|ref|ZP_02664563.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|169797532|ref|YP_001715325.1| integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE]
 gi|184156542|ref|YP_001844881.1| integrase [Acinetobacter baumannii ACICU]
 gi|237640301|ref|YP_002891156.1| IntI1 [Escherichia coli]
 gi|237810044|ref|YP_002894484.1| IntI1 [Escherichia coli]
 gi|302141607|ref|YP_003813066.1| integrase type 1 [Klebsiella pneumoniae]
 gi|313116705|ref|YP_004032855.1| integrase [Edwardsiella tarda]
 gi|13344938|gb|AAK19119.1|AF263520_1 integrase INTI1 [Pseudomonas aeruginosa]
 gi|149117|gb|AAA92744.1| IntI1 integrase [Escherichia coli]
 gi|288634|emb|CAA51182.1| integrase [Klebsiella aerogenes]
 gi|1572565|gb|AAC64460.1| Int [Enterobacter aerogenes]
 gi|13508544|emb|CAC35169.1| DNA integrase IntI1 [Achromobacter denitrificans]
 gi|15375396|gb|AAK95981.1| IntI1 integrase [Escherichia coli]
 gi|17046108|dbj|BAB72152.1| DNA integrase [Escherichia coli]
 gi|17157973|gb|AAL36429.1| IntI1 integrase [Pseudomonas aeruginosa]
 gi|24527229|gb|AAM89398.1| IntI1 integrase [Klebsiella pneumoniae]
 gi|28629321|gb|AAO49601.1| IntI1 [Escherichia coli]
 gi|30524990|emb|CAD56838.1| Integrase INTI1 [Pseudomonas aeruginosa]
 gi|33358378|gb|AAQ16665.1| IntI1 [Escherichia coli]
 gi|45758101|gb|AAS76313.1| Int [Salmonella enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|53136974|emb|CAG30882.1| DNA integrase [uncultured bacterium]
 gi|56786620|gb|AAA92752.2| IntI1 integrase [Escherichia coli]
 gi|70905581|gb|AAZ14844.1| IntI1 [Acinetobacter baumannii]
 gi|72536052|gb|AAZ73121.1| IntI1 [Klebsiella pneumoniae]
 gi|78057541|gb|ABB17271.1| site-specific recombinase [Vibrio cholerae]
 gi|78709991|gb|ABB48427.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar
           Kentucky]
 gi|84180556|gb|ABC54721.1| IntI1 [Vibrio cholerae]
 gi|86212237|tpd|FAA00063.1| TPA: IntI1 integrase [Escherichia coli]
 gi|90265400|emb|CAJ77082.1| Integrase [Acinetobacter baumannii]
 gi|99867125|gb|ABF67770.1| IntI1 integrase [Escherichia coli APEC O1]
 gi|108945866|gb|ABG23475.1| integrase [Morganella morganii]
 gi|110346525|emb|CAJ58443.1| class 1 DNA integrase [Pseudomonas aeruginosa]
 gi|126635814|gb|ABO21789.1| IntI1 [Pseudomonas aeruginosa]
 gi|133905071|gb|ABO41086.1| integrase IntI1 for transposon Tn21 [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|134034958|gb|ABO46012.1| integrase [Enterobacter cloacae]
 gi|148455749|gb|ABQ65123.1| IntI1 [Pseudomonas aeruginosa]
 gi|149850111|emb|CAG29002.1| IntI1 [Klebsiella pneumoniae]
 gi|150958558|gb|ABR80585.1| integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|161087326|gb|ABX56796.1| IntI1 [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|169150459|emb|CAM88359.1| Integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE]
 gi|183208136|gb|ACC55534.1| integrase [Acinetobacter baumannii ACICU]
 gi|191174836|emb|CAQ43032.1| DNA integrase [Pseudomonas aeruginosa]
 gi|197287812|gb|EDY27202.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|207999196|emb|CAQ52799.1| class 1 integrase [Pseudomonas aeruginosa]
 gi|222353664|emb|CAU08341.1| integrase [Pseudomonas aeruginosa]
 gi|223868914|gb|ACN22478.1| integrase 1 [Klebsiella oxytoca]
 gi|224983001|gb|ACN73419.1| IntI1 [Acinetobacter sp. NFM2]
 gi|225121196|gb|ACN81019.1| IntI1 integrase [Acinetobacter baumannii]
 gi|226876274|gb|ACO89459.1| IntI1 integrase [Cloning vector pPSX]
 gi|229561520|gb|ACQ77723.1| IntI1 [Escherichia coli]
 gi|229561900|gb|ACQ78101.1| IntI1 [Escherichia coli]
 gi|254595917|gb|ACT75274.1| integrase [Acinetobacter baumannii]
 gi|283148037|gb|ADB13428.1| class 1 integrase [Escherichia coli]
 gi|283484045|gb|ADB23335.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|289065298|gb|ADC80800.1| IntI1 [Escherichia coli]
 gi|289065323|gb|ADC80824.1| IntI1 [Escherichia coli]
 gi|294884937|gb|ADF47470.1| integrase [Pseudomonas aeruginosa]
 gi|296033872|gb|ADG84835.1| integrase type 1 [Klebsiella pneumoniae]
 gi|299757085|emb|CAB92435.2| class 1 integrase [Acinetobacter baumannii]
 gi|307639753|gb|ADN80878.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|311629588|gb|ACI29751.2| IntI1 [Pseudomonas aeruginosa]
 gi|312192342|gb|ADQ43828.1| integrase [Edwardsiella tarda]
 gi|316994927|gb|ADU79012.1| IntI1 [Aeromonas veronii]
 gi|317109966|gb|ADU90903.1| IntI1, DNA integrase [uncultured bacterium]
 gi|324007543|gb|EGB76762.1| integron integrase [Escherichia coli MS 57-2]
          Length = 337

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 139/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVNWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|77163532|ref|YP_342058.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
 gi|254436437|ref|ZP_05049942.1| site-specific recombinase, phage integrase family protein
           [Nitrosococcus oceani AFC27]
 gi|76881846|gb|ABA56528.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
 gi|207087971|gb|EDZ65245.1| site-specific recombinase, phage integrase family protein
           [Nitrosococcus oceani AFC27]
          Length = 310

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 82/320 (25%), Positives = 146/320 (45%), Gaps = 25/320 (7%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E  + +  + R+++L +L   +G S+ T  +Y  D   +  +LA         +   Q +
Sbjct: 2   EKKAVDFWQARKDFLAHLHYAKGYSQGTCYAYNSDLGIWGRWLAEVG------KDWCQAT 55

Query: 68  YTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           + +   F++   R +      + R  S + SF K+  K  +     I      K+   +P
Sbjct: 56  HADTEKFVAWQMRERGAKAHIVARRSSCLGSFYKWAMKNALVESDPIYLADKPKRPYRIP 115

Query: 127 RALNEKQ----------ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             L +++             L +N+   T    K +  R   +  L+   GLRISEAL++
Sbjct: 116 VWLEKEEQQALQEATQRIDNLPENIFGRTQEHIKAVRRRYDVLFGLILNSGLRISEALAV 175

Query: 177 TPQN---IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
             ++   +     ++RI GKG++ R+VPL  +  +    +      D  +  + P     
Sbjct: 176 KVRDVRVMNGIAKSVRIIGKGNRERLVPLPEAFGQVFGAWLQGREGDDFVFAKAP----- 230

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            GKP  P   + Y+R+L    G+    T H LRH++AT LL +G +L  IQ++LGH  LS
Sbjct: 231 GGKPPGPHAARAYLRRLIERAGIDKPVTPHKLRHTYATRLLESGAELVDIQALLGHVDLS 290

Query: 294 TTQIYTNVNSKNGGDWMMEI 313
           TTQIYT+V+ +     + ++
Sbjct: 291 TTQIYTHVSEERMAGVVAKL 310


>gi|325678006|ref|ZP_08157645.1| site-specific tyrosine recombinase XerC [Ruminococcus albus 8]
 gi|324110286|gb|EGC04463.1| site-specific tyrosine recombinase XerC [Ruminococcus albus 8]
          Length = 326

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 83/327 (25%), Positives = 143/327 (43%), Gaps = 32/327 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE--------EKITIQT-----IR 64
            +++L NL I +    LT   Y  D R FL ++    +        E IT++      + 
Sbjct: 13  LEDFLVNLSIIKNRGDLTTDEYYLDIRTFLRYIKIKNKIVPSETKFENITVKDTPIELLE 72

Query: 65  QLSYTEIRAFISKR---RTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLK 120
             +  +   ++      R   +  R   R  + +K F +YL  +  + ++ NI ++    
Sbjct: 73  NFTEKDAYQYMVWLKDERQNGVAAR--ARKTTSLKQFYEYLANKSHLISKDNISSLEVPN 130

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
              +LP+ L   +  TL+ ++    +         +  I+ L   CG+R+SE   +   +
Sbjct: 131 VKRALPKYLTLDEVQTLLSSIRTKNTER-------DYCIITLFLNCGMRLSELCGININD 183

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I  +  TLR+ GKG K RI+ L  +  KAI +Y            +  LF   R   ++ 
Sbjct: 184 IAFENKTLRLLGKGRKERIIYLNDNCIKAIEQYLPYRKNYEMAQNEKALFLSSRKNRISR 243

Query: 241 GVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLSTTQIY 298
              Q+ I +     GL     T H LRH+ AT +  +NGGD+ +++ ILGH   STT+IY
Sbjct: 244 RRVQKIIEECIFAAGLKNTGVTTHKLRHTAATLMYNNNGGDILAVKEILGHESTSTTEIY 303

Query: 299 TNVNSKNGGDWMMEIYDQTHPSITQKD 325
           T++    G D M    +     + +KD
Sbjct: 304 THL----GSDKMKNTMNVMEDLLKKKD 326


>gi|15894453|ref|NP_347802.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum
           ATCC 824]
 gi|15024091|gb|AAK79142.1|AE007632_7 Integrase/recombinase (xerD/xerC family) [Clostridium
           acetobutylicum ATCC 824]
 gi|325508584|gb|ADZ20220.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum
           EA 2018]
          Length = 299

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 135/294 (45%), Gaps = 21/294 (7%)

Query: 27  IERGL---SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
            E+ L   S+ T + Y  D + +  ++     +    +    + Y EI+ FI+       
Sbjct: 10  YEKNLLVKSEGTRKQYLNDLKVWFRYMKNKKRQITKDEDFVNIDYREIKKFINYLIKNGR 69

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN---LKKSNSLPRALNEKQALTLVDN 140
              +++R +  +K F +YL + KI  ++    +      K    LP++L+ ++   L+++
Sbjct: 70  AATTIRRKIISLKLFFQYLDQEKIVLDNPFDKIDKRDLPKIPKRLPKSLSIEECKRLINS 129

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           V             R+  I+ +    G+R+SE +SL   NI++++  +RI GK +K R+V
Sbjct: 130 V-------NSRNTIRDKCIIIIFLSTGMRLSELISLNVDNILEEE--IRIIGKENKERVV 180

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-- 258
            L    +K +  Y    P +L       LF   R   +  G  Q  IR      G+    
Sbjct: 181 YLTDQAKKIVKLYIKQRPKNLKTK---ALFLSERNGRIARGTVQNAIRNAMYNAGIKGDN 237

Query: 259 STTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               H LRH+FAT L  +G  DL  +Q +LGH  +STT+IYT+V+ +   + + 
Sbjct: 238 DVLVHILRHTFATLLYQSGEVDLFQLQELLGHEDVSTTRIYTDVSKEQLKNAVE 291


>gi|92112109|gb|ABE73743.1| class 1 integron integrase [Azoarcus communis]
          Length = 337

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 85/364 (23%), Positives = 152/364 (41%), Gaps = 67/364 (18%)

Query: 1   MEGNN--LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI 58
           M+ +   LP + S ++L + +  ++ L      S  T Q+Y    R F+ F         
Sbjct: 1   MKTSTAPLPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH-------- 48

Query: 59  TIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
            ++    L  +E+ AF+S     +K+   + +++L+ +  F   +    +T    +  + 
Sbjct: 49  GVRHPATLGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDLTW---LQEIG 105

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             + S  LP  L   + + ++            +++  +     LLYG G+RISE L L 
Sbjct: 106 RPRPSRRLPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLR 154

Query: 178 PQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------ 212
            +++  D  T+ ++ GKG K R + L  S+  ++ E                        
Sbjct: 155 VKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARDWWLKDQAEGRSGVALPD 214

Query: 213 ------------YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
                       +     F  + +   P    +R   +    FQR  ++     G+    
Sbjct: 215 ALERKYPRAGHSWPWFLVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPA 274

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V  K GG  +    D   P 
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVL-KVGGAGVRSPLDALPPL 333

Query: 321 ITQK 324
            +++
Sbjct: 334 ASER 337


>gi|170293839|gb|ACB12975.1| IntI 1 [Aquabacterium sp. PL1F5]
 gi|170293900|gb|ACB13034.1| IntI1 [Imtechium sp. PL2H3]
          Length = 337

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 139/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRESIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|152985119|ref|YP_001350673.1| integrase/recombinase [Pseudomonas aeruginosa PA7]
 gi|150960277|gb|ABR82302.1| integrase/recombinase (E2 protein) [Pseudomonas aeruginosa PA7]
          Length = 337

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 79/341 (23%), Positives = 141/341 (41%), Gaps = 66/341 (19%)

Query: 1   MEGNN--LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI 58
           M+ +   LP + S ++L + +  ++ L      S  T Q+Y    R F+ F         
Sbjct: 1   MKTSTAPLPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH-------- 48

Query: 59  TIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
            ++    L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  + 
Sbjct: 49  GVRHPATLGSSEVEAFLSWLANERKVSASTHRQALAALLFFYGKVLCADL---PWLQEIG 105

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             + S  LP  L   + + ++            +++  +     LLYG G+RISE L L 
Sbjct: 106 RPRPSRRLPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLR 154

Query: 178 PQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------ 212
            +++  D  T+ ++ GKG K R + L  S+   + E                        
Sbjct: 155 VKDLDFDHGTIIVREGKGSKDRALMLPESLALGLREQLARARAWWLKDQAEGRSGVALPD 214

Query: 213 ------------YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
                       +     F  + +   P    +R   +    FQR  ++     G+    
Sbjct: 215 ALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPA 274

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|45766|emb|CAA33849.1| unnamed protein product [Plasmid R1033]
 gi|530804|gb|AAB59999.1| IntI1 integrase [Pseudomonas aeruginosa]
          Length = 337

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 138/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVNWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+   + E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPTLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|41023639|emb|CAF18331.1| integrase/recombinase IntI1 [Morganella morganii subsp. morganii]
          Length = 320

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 139/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSSRTEQAYVNWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|218707888|ref|YP_002415407.1| Integrase/recombinase (E2 protein) [Escherichia coli UMN026]
 gi|293404547|ref|ZP_06648540.1| integron integrase IntI1 [Escherichia coli FVEC1412]
 gi|218434985|emb|CAR15926.1| Integrase/recombinase (E2 protein) [Escherichia coli UMN026]
 gi|291428259|gb|EFF01285.1| integron integrase IntI1 [Escherichia coli FVEC1412]
          Length = 337

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 139/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWLWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|1403511|emb|CAA67039.1| integrase [Pseudomonas aeruginosa]
          Length = 336

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 138/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+   + E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPTLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|241992592|gb|ACS73649.1| IntI1 [uncultured bacterium]
          Length = 337

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 139/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALEREYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|8118290|gb|AAF72980.1|AF255921_1 recombinase [Shigella flexneri]
 gi|152063|gb|AAA91585.1| recombinase [Plasmid RGN238]
          Length = 337

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 139/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAQGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|9507567|ref|NP_052898.1| integrase [Plasmid R100]
 gi|17530624|ref|NP_511222.1| integrase [IncN plasmid R46]
 gi|18466564|ref|NP_569372.1| putative integrase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|31795140|ref|NP_857998.1| DNA integrase [uncultured bacterium]
 gi|51492558|ref|YP_067855.1| integrase/recombinase [Aeromonas punctata]
 gi|55275332|ref|YP_133854.1| DNA integrase [uncultured bacterium]
 gi|58000325|ref|YP_190211.1| integrase [Escherichia coli]
 gi|60115569|ref|YP_209361.1| integrase [Salmonella enterica subsp. enterica serovar Choleraesuis
           str. SC-B67]
 gi|66968565|ref|YP_245442.1| IntI1 DNA integrase [Pseudomonas aeruginosa]
 gi|77993248|ref|YP_358838.1| integrase [IncP-1beta multiresistance plasmid pB8]
 gi|111038080|ref|YP_709167.1| IntI1 integrase [IncP-1 plasmid pKJK5]
 gi|133756458|ref|YP_001096414.1| Tn21 integrase [Escherichia coli]
 gi|134044876|ref|YP_001102252.1| integrase IntI1 for transposon Tn21 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|145301311|ref|YP_001144151.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|156144910|ref|YP_001427371.1| integrase [Pseudomonas aeruginosa]
 gi|160431700|ref|YP_001552088.1| integrase [Salmonella enterica subsp. enterica serovar Dublin]
 gi|165938049|ref|ZP_02226609.1| integrase/recombinase (E2 protein) [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|170650836|ref|YP_001740003.1| integrase/recombinase [Escherichia coli SMS-3-5]
 gi|187736864|ref|YP_001816602.1| IntI1 [Escherichia coli 1520]
 gi|190410293|ref|YP_001965796.1| intI1 [Klebsiella pneumoniae]
 gi|190570443|ref|YP_001966865.1| integrase [Aeromonas hydrophila]
 gi|190576895|ref|YP_001966227.1| IntI1 integrase [Klebsiella pneumoniae]
 gi|194430536|ref|ZP_03063005.1| integrase/recombinase [Escherichia coli B171]
 gi|194439843|ref|ZP_03071908.1| integrase/recombinase [Escherichia coli 101-1]
 gi|194733854|ref|YP_002112947.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|209901149|ref|YP_002286930.1| integrase/recombinase [Klebsiella pneumoniae]
 gi|215528097|ref|YP_002332850.1| integrase [Klebsiella pneumoniae]
 gi|226807711|ref|YP_002791406.1| IntI1 [Enterobacter cloacae]
 gi|226807858|ref|YP_002791507.1| IntI1 integrase [Enterobacter cloacae]
 gi|226810024|ref|YP_002791719.1| IntI1 [Enterobacter cloacae]
 gi|226810139|ref|YP_002791835.1| IntI1 integrase [Enterobacter cloacae]
 gi|256367791|ref|YP_003108348.1| integrase/recombinase [Escherichia coli]
 gi|284000137|ref|YP_003377824.1| integrase IntL [Escherichia coli O26:H-]
 gi|297622240|ref|YP_003675796.1| IntI1 [Klebsiella oxytoca KOX105]
 gi|300819973|ref|ZP_07100154.1| integron integrase [Escherichia coli MS 107-1]
 gi|300906153|ref|ZP_07123870.1| integron integrase [Escherichia coli MS 84-1]
 gi|300955292|ref|ZP_07167681.1| integron integrase [Escherichia coli MS 175-1]
 gi|301302513|ref|ZP_07208643.1| integron integrase [Escherichia coli MS 124-1]
 gi|301329501|ref|ZP_07222300.1| integron integrase [Escherichia coli MS 78-1]
 gi|305696852|ref|YP_003864166.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|310286416|ref|YP_003937677.1| integrase/recombinase [Escherichia coli]
 gi|313107841|ref|ZP_07794014.1| integrase/recombinase (E2 protein) [Pseudomonas aeruginosa 39016]
 gi|330011345|ref|ZP_08307041.1| integron integrase [Klebsiella sp. MS 92-3]
 gi|331680833|ref|ZP_08381473.1| integrase/recombinase (E2 protein) [Escherichia coli H299]
 gi|50402171|sp|P62590|INT2_ECOLX RecName: Full=Integrase/recombinase; AltName: Full=E2 protein
 gi|50402172|sp|P62591|INT2_PSEAE RecName: Full=Integrase/recombinase; AltName: Full=E2 protein
 gi|50402173|sp|P62592|INT2_SALTI RecName: Full=Integrase/recombinase; AltName: Full=E2 protein
 gi|2120150|pir||I39499 integrase - Acinetobacter baumannii
 gi|6752460|gb|AAF27722.1|AF156486_1 integrase INTI1 [Klebsiella pneumoniae]
 gi|7381448|gb|AAF61482.1|AF191564_1 integrase [Pseudomonas aeruginosa]
 gi|13940487|gb|AAK50385.1|AF313472_1 IntI1 integrase [Pseudomonas aeruginosa]
 gi|15384483|gb|AAK96393.1|AF313471_1 IntI1 integrase [Pseudomonas aeruginosa]
 gi|18958400|gb|AAL82587.1|AF355189_1 integrase IntI1 [Pseudomonas aeruginosa]
 gi|48206|emb|CAA31361.1| unnamed protein product [Escherichia coli]
 gi|151300|gb|AAA25857.1| integrase [Pseudomonas aeruginosa]
 gi|151817|gb|AAB59081.1| IntI1 integrase [Plasmid R46]
 gi|530814|gb|AAC44315.1| DNA integrase [Pseudomonas aeruginosa]
 gi|596251|gb|AAA56784.1| integrase [Acinetobacter baumannii]
 gi|3088617|gb|AAC14727.1| DNA integrase [Plasmid NR79]
 gi|3513661|gb|AAC33911.1| IntI1 DNA integrase [Escherichia coli]
 gi|5103166|dbj|BAA78802.1| integrase for In2 [Plasmid R100]
 gi|16357506|gb|AAK60185.2| integrase IntI1 [Escherichia coli]
 gi|16505880|emb|CAD09758.1| putative integrase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|17342661|gb|AAL13418.1| integrase [IncN plasmid R46]
 gi|21898667|gb|AAM77079.1| integrase [uncultured bacterium]
 gi|29329827|emb|CAD57181.1| integrase [Aeromonas salmonicida]
 gi|30349168|gb|AAP20904.1| integrase [Escherichia coli]
 gi|30349183|gb|AAP20918.1| integrase [Escherichia coli]
 gi|30350250|gb|AAP22972.1| IntI1 [Escherichia coli]
 gi|31746384|emb|CAD97509.1| DNA integrase [uncultured bacterium]
 gi|33086394|emb|CAD80250.1| integrase class1 [Pseudomonas aeruginosa]
 gi|34556020|emb|CAD57194.1| integrase [Aeromonas salmonicida]
 gi|40645553|dbj|BAD06398.1| DNA integrase [Klebsiella pneumoniae]
 gi|42391698|dbj|BAD08688.1| DNA integrase [Klebsiella pneumoniae]
 gi|42543943|dbj|BAD11025.1| DNA integrase [Klebsiella pneumoniae]
 gi|45502089|emb|CAF31510.1| IntI1 DNA integrase [Salmonella enterica]
 gi|45758127|gb|AAS76339.1| integrase [Salmonella enterica subsp. enterica serovar Choleraesuis
           str. SC-B67]
 gi|45925935|gb|AAS79108.1| integrase [Shigella flexneri 2a]
 gi|45934117|gb|AAS79142.1| integrase [Pseudomonas aeruginosa]
 gi|46559086|emb|CAE52510.2| DNA integrase [Pseudomonas aeruginosa]
 gi|47716827|gb|AAT37602.1| integrase [Escherichia coli]
 gi|48526060|gb|AAT45232.1| integrase [Salmonella enterica subsp. enterica serovar
           Choleraesuis]
 gi|51470601|emb|CAG15092.1| integrase/recombinase [Aeromonas caviae]
 gi|54300645|gb|AAV32837.1| integrase [Pseudomonas aeruginosa]
 gi|54887450|emb|CAG34228.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|54887458|emb|CAG34236.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|54969638|emb|CAG27804.1| DNA integrase [uncultured bacterium]
 gi|66259843|gb|AAY43107.1| integrase [Enterobacter cloacae]
 gi|66862647|emb|CAI46945.1| IntI1 DNA integrase [Pseudomonas aeruginosa]
 gi|71361872|gb|AAZ30042.1| Integrase [Enterobacter cloacae]
 gi|72416446|emb|CAF31402.2| type I integrase [Pseudomonas aeruginosa]
 gi|77734001|emb|CAI10765.1| integrase [IncP-1beta multiresistance plasmid pB8]
 gi|81072647|gb|ABB55351.1| IntI1 integrase [Enterobacter cloacae]
 gi|87295510|gb|ABD37051.1| IntI1 [Escherichia coli]
 gi|88702681|gb|ABD49194.1| integrase [Achromobacter xylosoxidans]
 gi|88911246|gb|ABD58919.1| IntI1 [Pseudomonas aeruginosa]
 gi|89033269|gb|ABD59947.1| Tn21 integrase [Escherichia coli]
 gi|89211896|gb|ABD63310.1| IntI1 [Bordetella bronchiseptica]
 gi|89243390|gb|ABD64875.1| integrase [Aeromonas hydrophila]
 gi|89330180|emb|CAJ84004.1| integrase [Salmonella enterica subsp. enterica serovar Keurmassar]
 gi|92112119|gb|ABE73722.1| integrase [Acidovorax sp. MUL2G8]
 gi|92112131|gb|ABE73754.1| integrase [Burkholderiales bacterium MUL2G11]
 gi|110264479|gb|ABG56842.1| IntI1 integrase [Klebsiella pneumoniae]
 gi|110781085|emb|CAK02669.1| IntI1 integrase [IncP-1 plasmid pKJK5]
 gi|112553509|gb|ABI20478.1| integrase [uncultured bacterium]
 gi|114147178|gb|ABI50465.1| integrase [Klebsiella pneumoniae]
 gi|114147192|gb|ABI50478.1| IntI1 [Klebsiella pneumoniae]
 gi|116294895|gb|ABJ98410.1| IntI1 [Shigella flexneri 5]
 gi|118402696|emb|CAI94353.1| type I integrase [Pseudomonas aeruginosa]
 gi|118402704|emb|CAI94360.1| type I integrase [Pseudomonas aeruginosa]
 gi|118402713|emb|CAI94368.1| type I integrase [Pseudomonas aeruginosa]
 gi|118402722|emb|CAI94376.1| type I integrase [Pseudomonas aeruginosa]
 gi|119116290|emb|CAH10848.2| integrase-recombinase [Pseudomonas aeruginosa]
 gi|133905410|gb|ABO42172.1| integrase IntI1 for transposon Tn21 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|142856088|gb|ABO92403.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|145848971|emb|CAM91521.1| integrase intiI [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|146151087|gb|ABQ02853.1| intI1 [Klebsiella pneumoniae]
 gi|148455768|gb|ABQ65126.1| IntI1 [Pseudomonas aeruginosa]
 gi|156104633|emb|CAO91764.1| integrase [Pseudomonas aeruginosa]
 gi|159885569|dbj|BAF93171.1| integrase [Salmonella enterica subsp. enterica serovar Dublin]
 gi|165914072|gb|EDR32689.1| integrase/recombinase (E2 protein) [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165928622|gb|ABY74390.1| integrase [Klebsiella pneumoniae]
 gi|170293866|gb|ACB13001.1| IntI1 [Hydrogenophaga sp. PL2G6]
 gi|170522112|gb|ACB20289.1| integrase/recombinase [Escherichia coli SMS-3-5]
 gi|170785722|gb|ACB37786.1| IntI1 [Klebsiella pneumoniae]
 gi|172051446|emb|CAP07788.1| IntI1 [Escherichia coli]
 gi|182382566|gb|ACB87555.1| DNA integrase [Pseudomonas aeruginosa]
 gi|190683007|gb|ACE81789.1| IntI1 [Enterobacter cloacae]
 gi|192822646|gb|ACF06155.1| class 1 integrase [Klebsiella pneumoniae]
 gi|193409924|gb|ACF17979.1| IntI1 [Escherichia coli]
 gi|194326135|emb|CAQ64786.1| intergrase [Cloning vector pRG930cm]
 gi|194359398|gb|AAK59383.2| DNA integrase [Pseudomonas aeruginosa]
 gi|194411419|gb|EDX27772.1| integrase/recombinase [Escherichia coli B171]
 gi|194421233|gb|EDX37255.1| integrase/recombinase [Escherichia coli 101-1]
 gi|194709356|gb|ACF88579.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197359178|gb|ACH69795.1| class I integrase [Pseudomonas aeruginosa]
 gi|207581351|gb|ACI24747.1| integrase [Salmonella enterica subsp. enterica serovar Newport]
 gi|208436691|gb|ACI28900.1| IntI1 [Pseudomonas aeruginosa]
 gi|209574100|gb|ACI62988.1| integrase/recombinase [Klebsiella pneumoniae]
 gi|225730198|gb|ACO24910.1| integrase [Enterobacter aerogenes]
 gi|225730210|gb|ACO24921.1| integrase [Escherichia coli]
 gi|226425937|gb|ACO54030.1| IntI1 [Enterobacter cloacae]
 gi|226426085|gb|ACO54178.1| IntI1 integrase [Enterobacter cloacae]
 gi|226426251|gb|ACO54343.1| IntI1 [Enterobacter cloacae]
 gi|226426366|gb|ACO54458.1| IntI1 integrase [Enterobacter cloacae]
 gi|227809552|gb|ACP40994.1| DNA integrase intI1 [Shigella flexneri]
 gi|228480728|gb|ACQ42055.1| integrase/recombinase [Escherichia coli]
 gi|238773820|dbj|BAH66385.1| integrase [Pseudomonas aeruginosa]
 gi|247712942|gb|ACT09123.1| IntI1 [Pseudomonas aeruginosa]
 gi|253559511|gb|ACT32445.1| class I integrase [Xanthomonas oryzae pv. oryzae]
 gi|253559513|gb|ACT32446.1| class I integrase [Xanthomonas oryzae pv. oryzae]
 gi|254914163|gb|ACT83767.1| integrase IntI1 [Escherichia coli]
 gi|257043820|gb|ACV33237.1| DNA integrase [Enterobacter cloacae]
 gi|257043842|gb|ACV33257.1| DNA integrase [Pseudomonas aeruginosa]
 gi|257043850|gb|ACV33264.1| DNA integrase [Pseudomonas aeruginosa]
 gi|257123763|gb|ACV41753.1| IntI1 [Pseudomonas aeruginosa]
 gi|260677486|gb|ACX47970.1| integrase [Pseudomonas aeruginosa]
 gi|267850619|gb|ACY82390.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|281323234|gb|ADA60225.1| integrase/recombinase [Klebsiella oxytoca]
 gi|281600419|gb|ADA73403.1| Integrase/recombinase [Shigella flexneri 2002017]
 gi|283445077|gb|ADB20421.1| integrase IntI1 [Escherichia coli O26:H-]
 gi|284923819|emb|CBG36917.1| integrase [Escherichia coli 042]
 gi|289064109|gb|ADC80448.1| class 1 integron integrase IntI1 [Pseudomonas alcaligenes]
 gi|289064116|gb|ADC80454.1| class 1 integron integrase IntI1 [Pseudomonas oryzihabitans]
 gi|289064135|gb|ADC80472.1| class 1 integron integrase IntI1 [Comamonas testosteroni]
 gi|289065278|gb|ADC80781.1| IntI1 [Escherichia coli]
 gi|289065352|gb|ADC80852.1| IntI1 [Escherichia coli]
 gi|289551904|gb|ADD10607.1| IntI1 [Pseudomonas putida]
 gi|290964843|emb|CBH41111.1| class 1 integrase [Kluyvera georgiana]
 gi|295981465|emb|CBL87884.1| IntI1 integrase [Pseudomonas sp. Tik3]
 gi|296492059|gb|ADH29561.1| DNA integrase IntI1 [Klebsiella oxytoca KOX105]
 gi|299483209|gb|ADJ19347.1| IntI1 [Enterobacter cloacae]
 gi|300317797|gb|EFJ67581.1| integron integrase [Escherichia coli MS 175-1]
 gi|300402043|gb|EFJ85581.1| integron integrase [Escherichia coli MS 84-1]
 gi|300527473|gb|EFK48535.1| integron integrase [Escherichia coli MS 107-1]
 gi|300842038|gb|EFK69798.1| integron integrase [Escherichia coli MS 124-1]
 gi|300844364|gb|EFK72124.1| integron integrase [Escherichia coli MS 78-1]
 gi|302127772|emb|CBO78185.1| class 1 integrase [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|304376153|dbj|BAJ15315.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|308826745|emb|CBX36000.1| Integrase/recombinase [Escherichia coli]
 gi|310880516|gb|EFQ39110.1| integrase/recombinase (E2 protein) [Pseudomonas aeruginosa 39016]
 gi|312261322|gb|ADQ54342.1| integrase [Klebsiella pneumoniae]
 gi|315252947|gb|EFU32915.1| integron integrase [Escherichia coli MS 85-1]
 gi|315667013|gb|ADU55733.1| intI1 [Pseudomonas sp. 11BF10]
 gi|317109804|gb|ADU90743.1| Integrase/recombinase [uncultured bacterium]
 gi|321271381|gb|ADW79471.1| class 1 integron integrase IntI1 [Escherichia coli]
 gi|323903319|gb|ADY11083.1| IntI1 DNA integrase [Escherichia coli]
 gi|323959138|gb|EGB54804.1| integron integrase [Escherichia coli H489]
 gi|324020458|gb|EGB89677.1| integron integrase [Escherichia coli MS 117-3]
 gi|324110986|gb|EGC04975.1| integron integrase [Escherichia fergusonii B253]
 gi|325491815|gb|ADZ16819.1| class 1 integrase [Pseudomonas fluorescens]
 gi|325495829|gb|EGC93689.1| integrase [Escherichia fergusonii ECD227]
 gi|327536588|gb|AEA95421.1| integron integrase IntI1 [Salmonella enterica subsp. enterica
           serovar Dublin]
 gi|327536704|gb|AEA95536.1| integron integrase IntI1 [Salmonella enterica subsp. enterica
           serovar Dublin]
 gi|328534216|gb|EGF60841.1| integron integrase [Klebsiella sp. MS 92-3]
 gi|331081821|gb|EGI52979.1| integrase/recombinase (E2 protein) [Escherichia coli H299]
 gi|332751435|gb|EGJ81838.1| integron integrase family protein [Shigella flexneri 2747-71]
 gi|332752605|gb|EGJ82991.1| integron integrase family protein [Shigella flexneri 2747-71]
 gi|332758761|gb|EGJ89080.1| integron integrase family protein [Shigella flexneri 2747-71]
 gi|332765272|gb|EGJ95498.1| integron integrase family protein [Shigella flexneri K-671]
 gi|332765338|gb|EGJ95557.1| integron integrase family protein [Shigella flexneri K-671]
 gi|333005791|gb|EGK25309.1| integron integrase family protein [Shigella flexneri K-218]
 gi|333006038|gb|EGK25552.1| integron integrase family protein [Shigella flexneri VA-6]
 gi|333008515|gb|EGK27985.1| integron integrase family protein [Shigella flexneri K-272]
 gi|333011761|gb|EGK31167.1| integron integrase family protein [Shigella flexneri K-227]
 gi|333012763|gb|EGK32142.1| integron integrase family protein [Shigella flexneri K-304]
 gi|333020622|gb|EGK39882.1| integron integrase family protein [Shigella flexneri K-227]
          Length = 337

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 139/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|323703822|ref|ZP_08115459.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
 gi|323531237|gb|EGB21139.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
          Length = 304

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 75/310 (24%), Positives = 154/310 (49%), Gaps = 24/310 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L   E  + LS+ +++ Y+    +FL +     E KI+I +   ++  + R ++  
Sbjct: 7   VKSFLMYQET-KNLSERSIEWYQRTLNKFLEYCE---ENKISITS---MTVPQARGYVHW 59

Query: 78  RRT------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
            +       +K  D  +   +  +K    YL + +   ++    ++ +K    +      
Sbjct: 60  LQNATAKTGKKYADNGINGFIRSVKVMFNYLLEDEYIEKNPFAKVKQIKTDKVIIHTFEP 119

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           ++   +++       +++ + D R++ ++ +LY CGLRISEA++L   +I  +++ +++ 
Sbjct: 120 QEVKKMLNQF-----NKSIYTDLRDALLIRILYDCGLRISEAINLKLTDIDTERNIIKVF 174

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQL 250
           GKG K RIVP   SV++ IL+Y       ++ +  +  LF   +G PL      R I+ +
Sbjct: 175 GKGHKERIVPFGRSVKREILKYLAKREKAISKDLDEGYLFSTRQGTPLMIRNVIRKIQTV 234

Query: 251 RRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            +   +     + HT RH+FA   L  GGDL S+Q I+GH  LSTT+ Y ++ +++    
Sbjct: 235 GKKANIEGKRLSPHTFRHTFAKTYLMQGGDLFSLQQIMGHSDLSTTRQYVHLLTED---- 290

Query: 310 MMEIYDQTHP 319
           + + + Q  P
Sbjct: 291 IQKKHRQFSP 300


>gi|253580998|ref|ZP_04858259.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847661|gb|EES75630.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 312

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 79/306 (25%), Positives = 135/306 (44%), Gaps = 20/306 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+  E  + L   T+++Y  D  QF  F+    +E  T ++        + +F+S   
Sbjct: 13  EYLKTCETIKKLDSKTIKAYRIDLSQFHTFM--LPQEDFTEKS-------TLNSFLSLLH 63

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-RNLKKSNSLPRALN----EKQA 134
            +K   ++ KR ++ +K+F  YL   +  +++    +    ++   LPR +     E   
Sbjct: 64  -KKYKPKTAKRKIATLKAFFHYLVYEESLSQNPFEKLNVKFREPQVLPRIVPNTIIEIFL 122

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
            T+     L  +        R+ A++ LL+  G+R+SE  SLT   I      + I GKG
Sbjct: 123 RTMYKQKKLAPTTYKYNSILRDIAVIELLFATGVRVSELCSLTLSQIDFTTYKIIINGKG 182

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K RI+ +     K IL  Y    F  +++     F     K  +    +  I +  +  
Sbjct: 183 SKERILQIGNEDVKEILSEYYAA-FKTDISKTGWFFINRLHKRYSEESVRSMIVKYLKLA 241

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            + +  T H  RHSFAT LL +  D+R IQ +LGH  + TT+IYTNV++      +    
Sbjct: 242 AIDMHITPHMFRHSFATLLLESDVDIRYIQRMLGHSSIKTTEIYTNVSTSKQNSILTA-- 299

Query: 315 DQTHPS 320
              HP 
Sbjct: 300 --KHPR 303


>gi|300115640|ref|YP_003762214.1| integrase family protein [Nitrosococcus watsoni C-113]
 gi|299541582|gb|ADJ29893.1| integrase family protein [Nitrosococcus watsonii C-113]
          Length = 310

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 81/320 (25%), Positives = 145/320 (45%), Gaps = 25/320 (7%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E  + +  + R+++L +L   +G S+ T  +Y  D   +  +L          +   Q +
Sbjct: 2   EKKAVDFWQARKDFLAHLHYAKGYSQGTCYAYNSDLGIWGRWLEEAG------KDWCQAT 55

Query: 68  YTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           + +   F++   R +      + R  S + SF K+  K  +     I      K+   +P
Sbjct: 56  HADTEKFVAWQMRERGAKAHIVARRSSCLGSFYKWAMKNALVESDPIYLADKPKRPYRIP 115

Query: 127 RALNEKQ----------ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             L +++             L +N+   T    K +  R   +  L+   GLRISEAL++
Sbjct: 116 VWLEKEEQQALQEATQRIDNLPENIFGRTQEHIKAVRRRYDVLFGLILNSGLRISEALAV 175

Query: 177 TPQN---IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
             ++   +     ++RI GKG++ R+VPL  +  +    +      D  +  + P     
Sbjct: 176 KVRDVRVMNGIAKSVRIIGKGNRERLVPLPEAFGQVFGAWLQGREGDDFVFAKAP----- 230

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            GKP  P   + Y+R+L    G+    T H LRH++AT LL +G +L  IQ++LGH  LS
Sbjct: 231 GGKPPGPHAARAYLRRLIERAGIDKPVTPHKLRHTYATRLLESGAELVDIQALLGHVDLS 290

Query: 294 TTQIYTNVNSKNGGDWMMEI 313
           TTQIYT+V+ +     + ++
Sbjct: 291 TTQIYTHVSEERMAGVVAKL 310


>gi|310827797|ref|YP_003960154.1| phage integrase [Eubacterium limosum KIST612]
 gi|308739531|gb|ADO37191.1| phage integrase [Eubacterium limosum KIST612]
          Length = 320

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 81/299 (27%), Positives = 141/299 (47%), Gaps = 29/299 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTE-------------EKITIQTIRQLSYTEIRAFI 75
           RG S  TL SY  D  QF  FL    +             + + ++ I+Q++  +I AF+
Sbjct: 20  RGFSPNTLISYRNDLMQFFRFLKVRFQLADPDAEFDTISIDDVDLKVIKQVTLPDIYAFL 79

Query: 76  SKRRTQKIG-DRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQ 133
           S   +++   D + KR  + IK+   YL     T  +     +   K  +  P  L   +
Sbjct: 80  SYATSKRSNIDSTRKRKTAAIKNLYHYLTTVIDTKMDDPTQRLEIPKVKSRDPVYLTLDE 139

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           AL+L++ V             R+ AI+ L   CG+R+SE  +L  ++I ++  T+ I GK
Sbjct: 140 ALSLLNAVDGE-------FYERDLAIITLFLNCGIRLSELTNLKIEDIQEE--TIHIVGK 190

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R + L  +  + +  Y  + P D ++     +F   R  PL+    Q  +++    
Sbjct: 191 GNKERNIRLNDACVETLEAYMAVRPEDTDVP---YVFLSKRKTPLSNRTVQSMVKKYVLK 247

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            GL     + H LRH+ AT +   G  D+R++Q +LGH  +STT+IYT++   +  + +
Sbjct: 248 AGLNADKISVHKLRHTAATLMHKYGQVDIRTLQKVLGHESISTTEIYTHIEVDDVREAI 306


>gi|153840548|ref|ZP_01993215.1| tyrosine recombinase [Vibrio parahaemolyticus AQ3810]
 gi|149745789|gb|EDM56919.1| tyrosine recombinase [Vibrio parahaemolyticus AQ3810]
          Length = 362

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 67/195 (34%), Positives = 101/195 (51%), Gaps = 11/195 (5%)

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++E+Q   L+D            ++ R+ A+L LLY  GLR++E +SLT +NI   Q  +
Sbjct: 177 ISEEQVDALLD-----APDPNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVV 231

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           R+ GKG K R+VP+  +    I  +     P  L       +F   R + +    F   I
Sbjct: 232 RVTGKGGKERLVPMGENAIDWIETFIQQGRPALLGETSSDVVFPSKRARQMTRQTFWHRI 291

Query: 248 RQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +      G+     + H LRH+FATHLL+ G DLR +Q +LGH  LSTTQIYT+V ++  
Sbjct: 292 KYYAVIAGIDTDQLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER- 350

Query: 307 GDWMMEIYDQTHPSI 321
              + +I+ Q HP  
Sbjct: 351 ---LKQIHSQHHPRA 362


>gi|42563728|gb|AAS20532.1| Int1 [Pseudomonas aeruginosa]
          Length = 337

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 139/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|37522020|ref|NP_925397.1| integrase/recombinase [Gloeobacter violaceus PCC 7421]
 gi|35213019|dbj|BAC90392.1| glr2451 [Gloeobacter violaceus PCC 7421]
          Length = 289

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 79/289 (27%), Positives = 126/289 (43%), Gaps = 22/289 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L    ++WL +L   R L+  TL++Y+ D  +F  F+     E +  QT           
Sbjct: 3   LRDAVEHWLDHLIAARSLAGNTLKAYQRDLEEFARFVES---EHLDWQTFGATGTHHFAQ 59

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN-LKKSNSLPRALNEK 132
            + K  T     RS  R LS +++F ++   +           R        LPR L+  
Sbjct: 60  ILQKTHT----PRSAARKLSALRTFYRHALVQGWAGGVPPACTRTLPSAERGLPRILSVA 115

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q   L+++    +  E+        A+L LLY  GL+  E   L  +++   ++ L +Q 
Sbjct: 116 QTEKLIES--AASPLES--------AVLELLYATGLKAGELCELRVRDVAFAEAYLSVQP 165

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
              + R+VP+      A+  Y    P       +  LF G + +PLN     R +R+   
Sbjct: 166 AASQPRVVPVGEPALAAVEAYLGSEPVL----PERWLFVGRQNRPLNRFHIYRIVREAAA 221

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              +    T  TLRHSFA HLL  G DL +++ +LGH  L+TT IYT +
Sbjct: 222 RSAIDWPVTPDTLRHSFAVHLLEGGADLATVRELLGHASLATTGIYTRL 270


>gi|1197009|gb|AAA88676.1| unknown protein [Escherichia coli]
          Length = 337

 Score =  193 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 139/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREHVSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|167621618|ref|YP_001672126.1| integrase family protein [Caulobacter sp. K31]
 gi|167645971|ref|YP_001683634.1| integrase family protein [Caulobacter sp. K31]
 gi|167646190|ref|YP_001683853.1| integrase family protein [Caulobacter sp. K31]
 gi|167348401|gb|ABZ71136.1| integrase family protein [Caulobacter sp. K31]
 gi|167348620|gb|ABZ71355.1| integrase family protein [Caulobacter sp. K31]
 gi|167351741|gb|ABZ74467.1| integrase family protein [Caulobacter sp. K31]
          Length = 330

 Score =  193 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 77/331 (23%), Positives = 125/331 (37%), Gaps = 28/331 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M    LP ++       ++ +   L ++   S  T+  Y    R  L +      +    
Sbjct: 1   MSAAALPALI-------QRFFTDRLCVQMEASPHTVAGYRDTFRLLLRYAGARCGKPPVK 53

Query: 61  QTIRQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRK---ITTESNILNM 116
            T+  +    +  F++   T +    RS    L+ I+SF +Y+       +     IL M
Sbjct: 54  LTVEDIDADLVADFLAHTETARGNSARSRNTRLAAIRSFFRYVAMSDPTWLLQCQRILAM 113

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
            N +        L+  +   L+          T W   R+ A+L L    GLR SE + L
Sbjct: 114 PNKRYVKRTVTFLDADEMAALL-----AAPDRTTWAGRRDHALLLLAIQTGLRASELVGL 168

Query: 177 TPQNIMDDQS-TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
              +++      +R  GKG K R  PL     K +  +        + +   PLF  IRG
Sbjct: 169 KLGDVVLGNGAHIRCMGKGRKERATPLRRETAKLLGAWIGN-----DKDENRPLFPSIRG 223

Query: 236 KPLNPGVFQRYIRQLRRYLGLP------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           + L+    +  +R+                 T HTLRHS A  LL +G D   I   LGH
Sbjct: 224 ERLSRDALEHLVRKHCLSASRTCPSIGTKRVTPHTLRHSTAMDLLHHGVDPAVIALWLGH 283

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
             + TTQIY + + +     +  +     PS
Sbjct: 284 ENVETTQIYIHADMRMKEKALARVAVPATPS 314


>gi|331698493|ref|YP_004334732.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190]
 gi|326953182|gb|AEA26879.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190]
          Length = 310

 Score =  193 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 77/313 (24%), Positives = 136/313 (43%), Gaps = 14/313 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +   +      +  +L+ ERG S  T+++Y  D    L         ++    +  L   
Sbjct: 11  LPPTVAGHLDAFTAHLDRERGRSSHTVRAYRSDLAGLLG--------RLPGDDLAVLDLG 62

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R+++++         +L R  +  ++F  +  +  +        + + +    LP  L
Sbjct: 63  LLRSWLAEAHAAGTSRSTLARRAAAARTFTAWAHRTGLLDSDPGARLDSPRPQRRLPSVL 122

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              QA  L+D      + E   +  R+  +L LLY  G+R++E   +   ++     T+R
Sbjct: 123 RADQAADLMDA-AASGAAERDPVALRDQLLLELLYATGVRVAEVCGIDVDDVDQSARTVR 181

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIR 248
           + GKG++ R V       +A+  +       L      P L  G+RG+ L+P V +  + 
Sbjct: 182 VLGKGNRERTVVYGVPAERALRTWLAAGRPALARTGGPPALLLGVRGRRLDPRVARSVVH 241

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                +        H LRH+ ATHLL  G DLR +Q +LGH  LSTTQ+YT+V      D
Sbjct: 242 AAVAAVPGAPDIGPHGLRHAAATHLLDGGADLRYVQELLGHATLSTTQLYTHVT----VD 297

Query: 309 WMMEIYDQTHPSI 321
            +  ++DQ HP  
Sbjct: 298 RLKVVHDQAHPRA 310


>gi|4210823|emb|CAA11470.1| intI1 [Pseudomonas aeruginosa]
          Length = 337

 Score =  193 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 138/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+   + E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPTLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|154150265|ref|YP_001403883.1| phage integrase family protein [Candidatus Methanoregula boonei
           6A8]
 gi|153998817|gb|ABS55240.1| phage integrase family protein [Methanoregula boonei 6A8]
          Length = 306

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 85/327 (25%), Positives = 146/327 (44%), Gaps = 44/327 (13%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQF--LIFLAFYTE-----------EKIT 59
           + LK  +N+L+     R  S  TL SYE   R F   ++L  +TE           E   
Sbjct: 8   DWLKSYRNYLRM----RNYSSRTLDSYEQVIRHFGYYVWLRRHTEVTKLVFFWKDLENAR 63

Query: 60  IQTIRQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
           + T   +  + I  F+S   T +    ++  R +S + SF ++L  +     + +  +  
Sbjct: 64  LDTSVDVPPSMITDFLSFVSTMRTYKPKTFHRIISTLSSFYRFLSVQGAVVANPLAGIER 123

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            +      + L   Q L L+D++           D R+  I+  +Y  G+R+SE  ++  
Sbjct: 124 PRIKQQEVKYLKHNQVLRLIDSIE----------DPRDKLIVRTIYSTGVRVSELCNMNV 173

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           ++I  D+ T+RI+GKGDKIRIV +       I ++       +   I  PLF G +GK +
Sbjct: 174 EDIDFDEHTIRIRGKGDKIRIVFVDDETLAGIQKF-------VGNRIAGPLFIGQQGKHI 226

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +P   Q   +        P   T H +RHS+A+ L     +LR +Q  LGH  + TT++Y
Sbjct: 227 SPRAIQHIFKHYA-----PAGITPHKIRHSYASELYRRSKNLRVVQENLGHTSIKTTEVY 281

Query: 299 TNVNSKNGGDWMMEIYDQTHPSITQKD 325
            + +     D   ++Y Q  P  +  +
Sbjct: 282 LHTD----IDERRQVYQQFFPLSSDNE 304


>gi|148455782|gb|ABQ65129.1| IntI1 [Pseudomonas aeruginosa]
          Length = 337

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 139/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|319954827|ref|YP_004166094.1| integrase family protein [Cellulophaga algicola DSM 14237]
 gi|319423487|gb|ADV50596.1| integrase family protein [Cellulophaga algicola DSM 14237]
          Length = 375

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 78/291 (26%), Positives = 137/291 (47%), Gaps = 30/291 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  LE++R  +  T+++Y      F+ +  +YT + I +  I      ++R ++ K 
Sbjct: 108 EEYLLKLELKR-YADNTVRNYVSCFEGFINY--YYTIDPIALNEI------DVRKYLQKL 158

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +   +  +  +++ IK F + +        +    +   +K   LP  +++ + + ++
Sbjct: 159 IQEGKSNSYINMAVNSIKFFYEIVHGM----PNRFYAIERPRKERQLPEVISKDEIVLIM 214

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197
           +N              ++  I+ LLY  GLR +E L+L   +I   +  ++I   KG+K 
Sbjct: 215 NNT----------NTLKHRCIIGLLYSAGLRRAELLNLNITDIDSKRMVVKIKNAKGNKD 264

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RI  L PS+ K + EYY           +  LF G  G   +P      I       G+ 
Sbjct: 265 RISLLSPSILKDLQEYY------KEYRPKKFLFEGQSGGKYSPTSVLNLISSAALRAGIL 318

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
              T H LRHSFATHLL NG D+R IQ +LGH    TT+IYT+V +++  +
Sbjct: 319 KRVTPHMLRHSFATHLLENGTDIRHIQLLLGHSSTKTTEIYTHVANRSFME 369


>gi|331271115|ref|YP_004385824.1| site specific tyrosine recombinase XerC [Clostridium botulinum
           BKT015925]
 gi|329127610|gb|AEB77552.1| site specific tyrosine recombinase XerC [Clostridium botulinum
           BKT015925]
          Length = 334

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 87/330 (26%), Positives = 146/330 (44%), Gaps = 37/330 (11%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE------ 55
           + + LP+ ++        ++    E  +G S  T++ YE D   F  FL  Y        
Sbjct: 13  KTDTLPQCMT--------SFFNYSETIKGNSIGTIKGYEVDLTMFFRFLKIYKNLVPNKL 64

Query: 56  --EKITIQTIR-----QLSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKR-K 106
             E+I I  I      +L  T++ AF+S   + +     +  R +S +K+F KYL  + K
Sbjct: 65  EFEEIPINDIDYNFLKELKLTDLYAFMSFTEKYRNNSSNTRARKVSTLKAFFKYLYGKIK 124

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
           +   +    +   K     P  L  +++  L+  +              +  IL +   C
Sbjct: 125 VLDYNIAEELEKPKLEKRNPIYLTLEESRKLLSVIDGKNKER-------DYCILNIFLNC 177

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL---CPFDLNL 223
           GLRISE  S+    I +D  TL + GKG+K R V L  +   +I +Y  +   C   + L
Sbjct: 178 GLRISELCSIQISKIKED--TLTVIGKGNKERTVYLNKACMDSITDYLKVRNSCKARVPL 235

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLS-NGGDLR 281
             +  LF       ++    ++ +++     GL     T H LRH+ AT +    G D+R
Sbjct: 236 EDKDILFLNKNYGHISKRSVEKLVKKYVEKAGLDTTKYTPHKLRHTAATLMFKYGGVDIR 295

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            +Q ILGH  +STTQIYT+V+++   D + 
Sbjct: 296 KLQLILGHESISTTQIYTHVDNEGLRDAVK 325


>gi|2668483|dbj|BAA23767.1| integrase [Pseudomonas aeruginosa]
          Length = 337

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 139/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHCVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|68262570|emb|CAJ13499.1| integrase/recombinase [Klebsiella pneumoniae]
          Length = 320

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 139/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVNWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|289707069|ref|ZP_06503398.1| site-specific tyrosine recombinase XerC [Micrococcus luteus SK58]
 gi|289556207|gb|EFD49569.1| site-specific tyrosine recombinase XerC [Micrococcus luteus SK58]
          Length = 373

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 76/259 (29%), Positives = 125/259 (48%), Gaps = 12/259 (4%)

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +R +++      +   +L R ++ +++F  +L++  +  +   L +R+ +   +LP  L 
Sbjct: 119 LRGWLAAMSGAGLARATLARRVAAVRTFTAWLRREGLRADDPALRLRSPRPEGTLPHVLQ 178

Query: 131 EKQALTLV-------DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           E+QA  L+       D            +  R++A+L LLY  G R++E  +L   ++  
Sbjct: 179 EQQARRLLAAAQERVDAAAAGDDPVAHALALRDAALLELLYATGARVAELSALDVDDLEA 238

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGV 242
            +  +R+ GKGD+ R VP      +A+  +  L    L      P LF G RG  L    
Sbjct: 239 GRGVVRLTGKGDRQRTVPYGAPAGRALQAWQRLGRPRLARPDSGPALFLGARGGRLGVRQ 298

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +  + +    LG   +   H LRH+ ATHLL  G DLRS+Q +LGH  L TTQ+YT+V+
Sbjct: 299 ARTVVDRALEGLGDTAARGPHALRHTAATHLLDGGADLRSVQELLGHASLRTTQVYTHVS 358

Query: 303 SKNGGDWMMEIYDQTHPSI 321
                D + E Y Q HP  
Sbjct: 359 ----IDRLREGYRQAHPRA 373


>gi|259503196|ref|ZP_05746098.1| tyrosine recombinase XerD [Lactobacillus antri DSM 16041]
 gi|259168853|gb|EEW53348.1| tyrosine recombinase XerD [Lactobacillus antri DSM 16041]
          Length = 295

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 68/309 (22%), Positives = 131/309 (42%), Gaps = 15/309 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +    +L  L+   G S  TL SY  D  Q + F       +  +     +   ++ A
Sbjct: 1   MDELVDKYLAYLKSNHGRSANTLLSYRRDLDQAVAFF-----RQRGVSDWTAVDQYQLLA 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK-SNSLPRALNEK 132
            +++++ +     ++ R LS ++ F +YL + +    +    + N ++  ++ P  L   
Sbjct: 56  LVAEQKKRGRSPATINRQLSALRQFYRYLVRHQQLRFNPTELIDNQEQTDDTPPVILTAA 115

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L+        +    +  R+ A+L +L   G+R+SE ++L   ++  D   LR+  
Sbjct: 116 EIKQLL-----AAPNPDHPLGKRDRAMLAVLATTGMRVSELVALLLTDLHLDIKMLRLGS 170

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
              + R+VP+     + +  Y       L    +  +F    G  L      + +R+L R
Sbjct: 171 GSRRERLVPVSDQAVQELEHYLAAVRPQLAAMGEQAVFVNAHGHQLTRQGIWKKLRELVR 230

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+  + T  TLR+SFA  LL +G D R IQ +LG+  L   + Y  +  +     +  
Sbjct: 231 RAGIEKTVTPRTLRYSFAVQLLQSGADGRLIQEMLGYSELRAIKPYLKMTVQE----LSA 286

Query: 313 IYDQTHPSI 321
            Y Q  P I
Sbjct: 287 DYRQHQPKI 295


>gi|62550837|emb|CAH64760.1| site-specific recombinase [uncultured bacterium]
 gi|194337964|emb|CAQ51376.1| InH class 1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 337

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 139/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYVKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|269925988|ref|YP_003322611.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269789648|gb|ACZ41789.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 316

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 80/314 (25%), Positives = 144/314 (45%), Gaps = 21/314 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L    Q++L    +E GLS  ++++Y+      + +L    + K  +  + + S    +
Sbjct: 10  DLRNSVQDFLDYCLVEEGLSPASVRTYQQVLYALVDWLELRLQSKAHVSNLDKQSVKAWQ 69

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--PRALN 130
            ++     +++ D +  + +S ++SF+ YL    +T+ +   +++  K    +   +AL+
Sbjct: 70  RYLV--VEKQLDDDTYVKYISALRSFVNYLHDEDLTSLTR-DDIKLPKSHMDVSSIKALS 126

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN------IMDD 184
                 L+          +     R+ A+L LLY  G+RI+E  SL            D+
Sbjct: 127 VDDVRALLM-----APDPSTPWGKRDRALLALLYCTGMRIAELCSLNRDQLPLEHLCEDE 181

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
              + I GKG K R+V +    ++ + EY  L   D N  + +          L P   Q
Sbjct: 182 ILEVSIIGKGRKPRVVFVDAVAQRLLKEYLQLRT-DENPALFVSFKGPTAEDRLTPRAIQ 240

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             I++  +  GL    T HT+RH+FA H L  G D R +Q+ LGH  L+TTQ YT V  +
Sbjct: 241 MSIKKYAKKAGLKTIPTPHTMRHTFAVHKLQGGADTRIVQAFLGHSSLATTQRYTRVTDR 300

Query: 305 NGGDWMMEIYDQTH 318
               ++ E Y++TH
Sbjct: 301 ----YLRESYERTH 310


>gi|167770641|ref|ZP_02442694.1| hypothetical protein ANACOL_01987 [Anaerotruncus colihominis DSM
           17241]
 gi|167667236|gb|EDS11366.1| hypothetical protein ANACOL_01987 [Anaerotruncus colihominis DSM
           17241]
          Length = 339

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 86/330 (26%), Positives = 147/330 (44%), Gaps = 38/330 (11%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIF---LAFYTEEKITIQTIRQLSYTEI----- 71
            +L  +   +G SK T+ +Y  D R FL +   +  Y  +   I    Q+S  +I     
Sbjct: 13  EFLFYMLTIKGRSKRTVDAYYIDLRTFLRYIKCVKHYVADPDDIDAFSQVSIADIPLETI 72

Query: 72  -----------RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNL 119
                        + +  R      RS  R +S ++SF  YL  +  +   + I N+   
Sbjct: 73  SSIKLGDVYQYLNYAASERENNAKTRS--RKVSSLRSFFNYLTVKSGLLKINPIENLEVP 130

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
               S+PR          ++  L   +H       R+  I  L   CG+R+SE + +  Q
Sbjct: 131 SVKKSVPRY-------LTLEECLELLTHIESSSYERDFCIATLFLNCGMRLSELVGINLQ 183

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           +I  D  T+R+ GKG+K RIV +  + ++A+  Y  +     N+  +  LF   RG  ++
Sbjct: 184 DIRGD--TIRLLGKGNKERIVYINDACKRALTTYLAVRMTPANVKYRDALFLSSRGTRIS 241

Query: 240 PGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQI 297
           P   ++ I +     GL     + H LRH+ AT +  +G  D+R ++ ILGH  LSTT+I
Sbjct: 242 PRRVEQIIARCLEQAGLAGQGYSPHKLRHTAATLMYQHGGVDIRVLKEILGHASLSTTEI 301

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
           YT+++ +      ME   ++ P  +   +K
Sbjct: 302 YTHISDRQ-----MEKAAKSSPLSSVAPRK 326


>gi|17386060|gb|AAL38574.1|AF445082_1 class I integrase [Acinetobacter baumannii]
 gi|47155069|emb|CAG26808.1| DNA integrase [Acinetobacter baumannii]
 gi|110350561|emb|CAK55555.1| integrase [Pseudomonas putida]
 gi|110350568|emb|CAK55561.1| integrase [Acinetobacter baumannii]
 gi|195977009|gb|ACG63564.1| DNA integrase [Citrobacter youngae]
          Length = 337

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 139/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLPTEQAYVNWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|229916013|ref|YP_002884659.1| integrase family protein [Exiguobacterium sp. AT1b]
 gi|229467442|gb|ACQ69214.1| integrase family protein [Exiguobacterium sp. AT1b]
          Length = 337

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 77/328 (23%), Positives = 140/328 (42%), Gaps = 31/328 (9%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA-----FYTE 55
            E N L  + +F      Q +  +L   +  SK T Q Y  D   F  ++          
Sbjct: 19  FELNGLHRLPAF-----IQQFFHHLAA-KHYSKQTAQRYVYDVLDFFRWVELVSGTELEP 72

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
           E I + +  ++ +    A+ +    + +     + R LS ++S   YL +    T +   
Sbjct: 73  ETIDLPSFTEIDHAGAEAYATYLALELENAPSVINRKLSTLQSLFNYLIETNQATVNPFQ 132

Query: 115 NMRNLKKSNSLPRALNEKQAL---TLVDNVLLHTSHETKWIDAR---NSAILYLLYGCGL 168
            +   K+    P  L E + L   TLV + +  T+ E  W +     +  I+ LL   G+
Sbjct: 133 TVERPKRGKRNPVYLTESEWLDFSTLVRSNVGMTNREASWYEMNRARDFLIIQLLGLTGM 192

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
           R+SE + L   +I  +  T+R+ GKGDK R++P+   +   + EY          + +  
Sbjct: 193 RVSELVGLNWSDINLETGTIRVIGKGDKERLIPIAGPLLPLLSEYRH-------TSSEGA 245

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGL------PLSTTAHTLRHSFATHLLSNGGDLRS 282
           +F+  +G+ +     Q  ++     L            T H LRH+FA+ L   G D+ +
Sbjct: 246 VFQNEKGQRIAVRTVQHMLKGHIDRLKPYLPFLSHKQVTPHKLRHTFASRLAMGGVDVLT 305

Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           IQ +LGH  ++TTQ+Y ++  +     +
Sbjct: 306 IQQLLGHESVATTQVYAHIGDERKKHAI 333


>gi|17548311|ref|NP_521651.1| site-specific tyrosine recombinase XerC [Ralstonia solanacearum
           GMI1000]
 gi|34222935|sp|Q8XTL6|XERC2_RALSO RecName: Full=Tyrosine recombinase xerC 2
 gi|17430557|emb|CAD17241.1| probable tyrosine recombinase xerc 2 protein [Ralstonia
           solanacearum GMI1000]
          Length = 347

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 72/304 (23%), Positives = 138/304 (45%), Gaps = 22/304 (7%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR------RTQKI 83
           G S  T+++     R+F+++      E+  I     ++   +  +              +
Sbjct: 34  GYSADTVRARRISIRRFIVWC-----EERGIAQPADVTRAVLERYQRHLFYYRKPNGAPL 88

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLVDNVL 142
              S   +L+ +K++ K+L +      +    +   K    LPRA L+ ++   +     
Sbjct: 89  TLGSQHGALAPLKTWFKWLARENHILYNPASELDLPKLPKHLPRAILSVQEVEAI----- 143

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVP 201
           L  +        R+ A+L LLY  G+R  E   L   ++   +    ++ GKG K R+VP
Sbjct: 144 LAEADPATPYGLRDRAMLELLYSTGIRRMEVAGLALYDVDATRRLAFVRDGKGAKDRVVP 203

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           +       +  Y       L +  +  LF    G+P++P      +++   + G+     
Sbjct: 204 VGVRALAWLDRYLLEARPQLIVAEREALFVTDYGEPVSPEYVASRVKRYMEFAGIQKPGA 263

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            H LRH+ ATH+L  G D+R +Q++LGH +L+TT+IYT+V+ ++    +  I+D THP+ 
Sbjct: 264 THLLRHAMATHMLEAGADVRVLQALLGHAQLNTTEIYTHVSIEH----LRAIHDATHPAR 319

Query: 322 TQKD 325
            Q++
Sbjct: 320 LQRE 323


>gi|170293912|gb|ACB13045.1| IntI1 [Thauera sp. B4]
          Length = 337

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 138/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + +  +            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRTL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|254787261|ref|YP_003074690.1| site-specific recombinase, phage integrase family [Teredinibacter
           turnerae T7901]
 gi|237687132|gb|ACR14396.1| site-specific recombinase, phage integrase family [Teredinibacter
           turnerae T7901]
          Length = 317

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 69/310 (22%), Positives = 132/310 (42%), Gaps = 27/310 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L   +  + LS  ++++YE D + FL+ +            + ++    I  F+    
Sbjct: 9   RFLDYCQYTKKLSHHSIRAYERDLQTFLVVVGRRAR-------LEKIDRKIITKFVDACF 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLV 138
              +   ++KR L+ +K+  K+L+  +I  +S        ++  + LPR L+ ++   L+
Sbjct: 62  ADGLSHATVKRRLACLKALFKWLENEEILDDSPFRKFELKVRLPHRLPRNLSVQELNKLL 121

Query: 139 DNV---------------LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
                                +   +          + LL+  G+R+ E   +  Q+I  
Sbjct: 122 RICRSRLGLPKNSDYRVGEFASVSRSNLNHLTTLVCVELLFTTGVRVGELTGIRLQDIYL 181

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
            +  + I+GKG + R V +     + ++E Y      +   I   L    RG+P    + 
Sbjct: 182 QEKFIHIRGKGQRERRVFVTDKSIRNLIESYIQL-RKITTPIDQNLLVNSRGRPATSQMV 240

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           + +++   +   L    T H  RHS AT LL+NG D+  +Q +LGH  +STTQIY +V+ 
Sbjct: 241 RIWLKNCSKAANLTRVATPHMYRHSTATELLNNGVDIIYVQKLLGHQSISTTQIYAHVS- 299

Query: 304 KNGGDWMMEI 313
               D M  +
Sbjct: 300 --HSDVMRNV 307


>gi|194396828|ref|YP_002037966.1| integrase [Streptococcus pneumoniae G54]
 gi|307127259|ref|YP_003879290.1| tyrosine recombinase [Streptococcus pneumoniae 670-6B]
 gi|194356495|gb|ACF54943.1| integrase [Streptococcus pneumoniae G54]
 gi|295980935|emb|CBJ57183.1| hypothetical protein [Streptococcus pneumoniae]
 gi|306484321|gb|ADM91190.1| tyrosine recombinase [Streptococcus pneumoniae 670-6B]
          Length = 298

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 85/296 (28%), Positives = 130/296 (43%), Gaps = 26/296 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L   +  + LS  T+++Y+ D  QF                    +Y  + ++I +   
Sbjct: 9   YLDYCKTHKRLSSHTIRAYKNDLMQFYNS-----------------NYDNVESYIEELTQ 51

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALT--- 136
             I   +L+R ++ IK F  YLK + I  E+    +R   +    LP+ +          
Sbjct: 52  SNIKTNTLRRKIACIKVFYNYLKYQHIIEENPFNQLRFQFRTEKILPKTIPYDILKNIFS 111

Query: 137 -LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L   V++  +   K    RN  I+ LL   G+RISE   +  ++I     TL I GKG 
Sbjct: 112 YLEQRVVISKTDYQKQKAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLHIIGKGK 171

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYL 254
           K RI+ L       +LE Y              LF G    KPL+    +  ++++    
Sbjct: 172 KERILFLGDQTTFNLLETYINKN---GKESNDFLFPGKHSPKPLSEQSVRLILKRIVEQN 228

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           GL  + T H  RHSFAT LL N  D+R IQ ILGH  +S TQIYT+V+     + +
Sbjct: 229 GLSKTITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISITQIYTHVSHSKQKEIL 284


>gi|256545162|ref|ZP_05472528.1| tyrosine recombinase XerC [Anaerococcus vaginalis ATCC 51170]
 gi|256399203|gb|EEU12814.1| tyrosine recombinase XerC [Anaerococcus vaginalis ATCC 51170]
          Length = 331

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 75/319 (23%), Positives = 142/319 (44%), Gaps = 29/319 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA------------FYTEEKITIQT--- 62
            +++L  L+  R LS+ T+  Y  D   F+ +               Y  +K  I +   
Sbjct: 10  LKDYLSYLKSIRALSEKTISEYHYDLINFISYQILRKVYFDDKEKFDYDLKKSNIDSNKI 69

Query: 63  -----IRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILN 115
                I  ++  ++ ++IS    +      +  R +S ++SF KYL +  +I   +    
Sbjct: 70  FNQAFINDINIQDMYSYISYLDNELNDNTSTRSRKISALRSFYKYLHQEIEIIDNNITEK 129

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +RN K     P  L   +   L++ V   +  + +++  R+ AI++     G+R+SE +S
Sbjct: 130 LRNPKIQKRQPVYLTLSETEHLLEIV---SQEKNEFLKNRDMAIVFTFLTTGMRLSELVS 186

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           +  ++I DD     I GKG+K R + L  +    I  Y  +    L       LF   R 
Sbjct: 187 VDLKDIKDDH--FSIIGKGNKERTIYLTKNCIDLIKNYIKIRKKYLKDKKIDALFISTRK 244

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLS 293
           + ++    Q  + +     G      + H LRH+ AT +   G  D+R+++ +LGH  +S
Sbjct: 245 QRISNRAVQSTVEKYLEKAGFDTKIYSTHKLRHTAATLMYKYGNVDIRALKDVLGHESVS 304

Query: 294 TTQIYTNVNSKNGGDWMME 312
           TTQIYT+++ ++    + +
Sbjct: 305 TTQIYTHLDDEDLKKAVNK 323


>gi|86742264|ref|YP_482664.1| phage integrase [Frankia sp. CcI3]
 gi|86569126|gb|ABD12935.1| tyrosine recombinase XerC subunit [Frankia sp. CcI3]
          Length = 385

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 87/334 (26%), Positives = 135/334 (40%), Gaps = 29/334 (8%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E    +       +L++L  E   S  T+++Y  D             E++    +  L 
Sbjct: 61  ETPESDWDTAVAGFLRHLIAELARSPETVRAYAADLANL-----RAHAERMGCSVLADLD 115

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
              +R++++  R       SL R  S  + F  Y  +           +   +    +P 
Sbjct: 116 LALLRSWLASMRAAGAAPASLARRASMARVFSSYAARHGFLDTDVAARLVGNRTVRRVPE 175

Query: 128 ALNEKQALTLVDNVLLHTSHE-------------------TKWIDARNSAILYLLYGCGL 168
            L    A  L++N     S                      + ++ R++ +L LLYG G+
Sbjct: 176 VLTAAAARQLLENPSPDVSPPGTSQPSGLPDSTADSERVVRRAVELRDALVLELLYGSGI 235

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQL 227
           R+SE   L   +I DD+  LR+ GKG K R VP       A+  +     P  +      
Sbjct: 236 RVSELCGLDLGHIDDDRRLLRVLGKGGKERSVPFGVPAVAALRSWRSTGRPRLMTARSGR 295

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
            L  G+RG  L+P   +R +         P   T H LRHS ATH+L  G DLRS+Q  L
Sbjct: 296 ALLLGLRGGRLDPRTVRRILTTRVAAGVAPAGLTPHGLRHSAATHMLEGGADLRSVQEFL 355

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           GH  L+TTQIYT+V  +     +   ++Q HP  
Sbjct: 356 GHASLATTQIYTHVTPER----LRAAFEQAHPRA 385


>gi|111225141|ref|YP_715935.1| tyrosine recombinase [Frankia alni ACN14a]
 gi|111152673|emb|CAJ64414.1| Tyrosine recombinase [Frankia alni ACN14a]
          Length = 355

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 83/326 (25%), Positives = 132/326 (40%), Gaps = 34/326 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + ++L  E   S  T+++Y  D             E+     +  L  T +R++++  R 
Sbjct: 39  FRRHLVAELDRSPETVRAYVADLASL-----RAHAEREGRPELADLDLTVLRSWLASMRA 93

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                 +  R  S  + F  Y  +R   T      +   +    +P+ L    A  L+D 
Sbjct: 94  AGAAPATRARRASLARVFSAYAARRGFLTTDVAARLVGARAVRQVPQVLTAVAARQLLDA 153

Query: 141 V------------------------LLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           V                            +   + +  R++ +L LLYG G+R+SE   L
Sbjct: 154 VSGPGQAPGDQAAAQVRHLTGTRPGRDDDAAVREALGLRDALVLELLYGSGVRVSELCGL 213

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIRG 235
              +I D++  LR+ GKG + R VP       A+  +       L        L  G  G
Sbjct: 214 DLGDIDDERRLLRVLGKGGRERSVPFGVPAAGALRAWRTSGRPLLAAPQSGSALLLGQLG 273

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             L+P   +R + +      +P   T H LRHS ATH+L  G DLRS+Q  LGH  L+TT
Sbjct: 274 GRLDPRTVRRVLARCVELGIVPPGLTPHGLRHSAATHMLEGGADLRSVQEFLGHASLATT 333

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHPSI 321
           QIYT+V  +     +   ++Q HP  
Sbjct: 334 QIYTHVTPER----LRAAFEQAHPRA 355


>gi|163733378|ref|ZP_02140821.1| phage integrase family protein [Roseobacter litoralis Och 149]
 gi|163736004|ref|ZP_02143430.1| phage integrase family protein [Roseobacter litoralis Och 149]
 gi|161390729|gb|EDQ15072.1| phage integrase family protein [Roseobacter litoralis Och 149]
 gi|161393166|gb|EDQ17492.1| phage integrase family protein [Roseobacter litoralis Och 149]
          Length = 332

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 78/324 (24%), Positives = 138/324 (42%), Gaps = 27/324 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+ + LP+++       R  +   +  +R  S+ T++SY    R FL F+A    + +  
Sbjct: 1   MKLDPLPQLL-------RMFFTDWMVQQRNASQHTVKSYRDTWRLFLRFVAVRCGKPVVR 53

Query: 61  QTIRQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRK---ITTESNILNM 116
            T+ +L+  E+ AF+    + +     +    L+ ++SF  ++  R+   +   + ++N+
Sbjct: 54  LTLSELTAAEVIAFLHHLESVRGDTIGTRNCRLAALRSFFGFVATREPELMAQCAEVMNV 113

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              K     P  L  ++   +     L     +  I  R+  +L  LY  G RI EAL L
Sbjct: 114 PTKKAPIRAPDYLEPEEVQAI-----LAQPDRSTLIGQRDHTLLSFLYNTGARIQEALDL 168

Query: 177 TPQNIMDDQ-STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
            PQ I  +    +R+ GKG K RI PL P     +       P   +      LF    G
Sbjct: 169 CPQAIRFEAPGCVRLYGKGRKERISPLWPETVALLRSLLKRVPRPADA----ALFVNRYG 224

Query: 236 KPLNPGVFQRYIRQLRRYLGLP------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
            PL+    +  + +  +   +          T H+ RH+ A HL++ G D+  I+S LGH
Sbjct: 225 SPLSASGVRFKLAEYVKAAAVDVPTLAQKHVTPHSFRHATAVHLVAAGVDVTVIRSWLGH 284

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEI 313
             L TT  Y   N +     + ++
Sbjct: 285 VSLETTNHYAQANLETKRRALEQV 308


>gi|260894011|ref|YP_003240105.1| integrase family protein [Ammonifex degensii KC4]
 gi|260866150|gb|ACX53255.1| integrase family protein [Ammonifex degensii KC4]
          Length = 288

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 74/300 (24%), Positives = 141/300 (47%), Gaps = 23/300 (7%)

Query: 20  NWLQNLEI---ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           +WL   E+    RGLS  ++++Y    R+F+ +    + E    + +  L   + R ++ 
Sbjct: 3   DWLSGFEVSCLRRGLSPSSVRAYLGVVRRFVAWWEGTSGEAFDPRAVTPLDVADYRRYL- 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             R + +   ++  +L  +KSF ++LK+ +   ++    ++ + +    PR L  ++   
Sbjct: 62  --RGRGLKPATVNFNLEAVKSFFRWLKEERALPDNPAEGVKKVPEVKPSPRWLTRREVGL 119

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ--STLRIQ-GK 193
           L            ++   ++ A+  LL   GLR+SEA+SL  ++++  +    +R++ GK
Sbjct: 120 L-------ARAVQRYGTVKDRALFALLLHAGLRVSEAVSLRLEDVVVRERSGFVRVRYGK 172

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R VPL  +VR+ + EY      +L       LF G +  P+ P   Q+ ++   R 
Sbjct: 173 GGKYREVPLNVTVRRVLKEYL----AELPPQGGGWLFPGKK-GPMTPRAVQKRLKFFGRI 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    T H LRH+F   L+  G  L  +  + GH RL TT +YT     +    + ++
Sbjct: 228 AGV--EVTPHKLRHTFCKWLIDAGESLDKVALLAGHARLDTTAVYTRPGRTDLERAVEKL 285


>gi|310764968|gb|ADP09918.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 351

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 85/324 (26%), Positives = 140/324 (43%), Gaps = 25/324 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +  ++WL +L    G S  T+Q Y    R FL +      E   I+   Q+S   + +
Sbjct: 21  LRQLAESWLSHLAAA-GRSPRTVQGYGERVRAFLAWC-----EPRGIRYAPQVSLAVLES 74

Query: 74  FISKRRTQKIGD------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP- 126
           +    +  +  D       S    L+ I+   ++L +R +   +    +   K+   LP 
Sbjct: 75  YQRWLQGYRKADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPA 134

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           +  +E +   ++ ++   T         RN AIL LL+  G+R SE   L   ++   + 
Sbjct: 135 QVFSEDETRRVLQSLDAGTP-----PGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRG 189

Query: 187 TLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQ 244
            + ++ GKG K R+VP+  +    +  Y       L        LF   +G  L  G   
Sbjct: 190 VVNVRRGKGGKDRVVPVGHAALIWLGRYLQDVRPRLAQRFDSGHLFISHKGTGLAHGTLT 249

Query: 245 RYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
               R +R    L  +   H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V  
Sbjct: 250 AMAGRAIRSGAHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAI 309

Query: 304 KNGGDWMMEIYDQTHPSITQKDKK 327
            +    + +++  THP+   + +K
Sbjct: 310 GH----LQKVHAHTHPAEKGRTEK 329


>gi|257066445|ref|YP_003152701.1| site-specific tyrosine recombinase XerC [Anaerococcus prevotii DSM
           20548]
 gi|256798325|gb|ACV28980.1| integrase family protein [Anaerococcus prevotii DSM 20548]
          Length = 329

 Score =  192 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 80/315 (25%), Positives = 148/315 (46%), Gaps = 27/315 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLA----FYTEEK--------------ITIQ 61
           ++L  L+  RGLS  T++ Y+ D    + ++     +Y +E+              +  +
Sbjct: 12  DYLNYLKSIRGLSSNTIKEYQYDLMLMIRYMIIRRIYYGDEESFNDDFKNIKINRIVNPK 71

Query: 62  TIRQLSYTEIRAFISKRRTQKI-GDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNL 119
               L+  +  AF+S    +K     +  R +S IKSF KYL    ++   +    + N 
Sbjct: 72  FFESLTLQDFYAFLSFLDNEKNDSSTTRSRKISAIKSFYKYLFSEIEVIDSNISDKLSNP 131

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K S   P  L   +   L+D +    +   +++  R+ AI++     G+R+SE +S+  +
Sbjct: 132 KISQRQPVYLTLNETELLLDTI---KNEPNEFLRFRDLAIVFTFLTTGMRLSELVSINME 188

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           +I+ D     I GKG+K R V L  + R+ + +Y  +    +       LF   R K ++
Sbjct: 189 DIIYDH--FNIIGKGNKERTVYLTNNCRELLDQYILIRNKYIKDLKIDALFISTRKKRIS 246

Query: 240 PGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQI 297
               Q  I +  +  G   S  + H LRH+ AT +   G  D+R+++ ILGH  +STTQI
Sbjct: 247 NRAVQSTIDKYLKKAGFDTSVYSTHKLRHTAATLMYKYGNVDIRALKDILGHVNISTTQI 306

Query: 298 YTNVNSKNGGDWMME 312
           YT+++ ++  + + +
Sbjct: 307 YTHLDDEDLKNAVNK 321


>gi|310766353|gb|ADP11303.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 351

 Score =  192 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 86/324 (26%), Positives = 140/324 (43%), Gaps = 25/324 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +  ++WL +L    G S  T+Q Y    R FL +      E   I+   Q+S   + +
Sbjct: 21  LRQLTESWLSHLAAA-GRSPRTVQGYGERVRAFLAWC-----EPRGIRYAPQVSLAVLES 74

Query: 74  FISKRRTQKIGD------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP- 126
           +    +  +  D       S    L+ I+   ++L +R +   +    +   K+   LP 
Sbjct: 75  YQRWLQGYRKADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPA 134

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           +  +E +   ++ ++   T         RN AIL LL+  G+R SE   L   ++   + 
Sbjct: 135 QVFSEDETRRVLQSLDAGTP-----PGLRNRAILELLWSSGIRRSELAGLMLSDVDFTRG 189

Query: 187 TLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQ 244
            + ++ GKG K R+VP+  +    +  Y       L        LF   +G  L  G   
Sbjct: 190 VVNVRRGKGGKERVVPVGHAALIWLGRYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLT 249

Query: 245 RYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
               R +R    L  +   H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V  
Sbjct: 250 AMAGRAIRDGAHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAI 309

Query: 304 KNGGDWMMEIYDQTHPSITQKDKK 327
            +    +  ++ QTHP+  ++  K
Sbjct: 310 GH----LQSVHAQTHPAEKRRTAK 329


>gi|259909787|ref|YP_002650143.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224965409|emb|CAX56941.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 351

 Score =  192 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 85/324 (26%), Positives = 141/324 (43%), Gaps = 25/324 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +  ++WL +L +  G S  T+Q Y    R FL +      E   I    Q+S   + A
Sbjct: 21  LRQLAESWLAHLVVA-GRSPRTVQGYRERVRAFLSWC-----EPRGITYAPQVSLAVLEA 74

Query: 74  FISKRRTQKIGD------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP- 126
           +    +  +  D       S    L+ I+   ++L +R +   +    +   K+   LP 
Sbjct: 75  YQRWLQGYRRADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPA 134

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           +  +E +   ++ ++   T         RN AIL LL+  G+R SE   L   ++   + 
Sbjct: 135 QVFSEAETRRVLQSLDAGTP-----PGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRG 189

Query: 187 TLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQ 244
            + ++ GKG K R+VP+  +    +  Y       L        LF   +G  L  G   
Sbjct: 190 VVNVRRGKGGKDRVVPVGHAALMWLGRYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLT 249

Query: 245 RYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
               R +R    L  +   H  RH+ AT +L NG D R IQ+ILGH +L TTQIYT V  
Sbjct: 250 AMAGRAIREGAHLKKAGACHIFRHTMATQMLENGADTRHIQAILGHEKLETTQIYTRVAI 309

Query: 304 KNGGDWMMEIYDQTHPSITQKDKK 327
            +    + +++  THP+  ++ +K
Sbjct: 310 GH----LQKVHAHTHPAEKRRTEK 329


>gi|259909812|ref|YP_002650168.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224965434|emb|CAX56966.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 351

 Score =  192 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 86/324 (26%), Positives = 141/324 (43%), Gaps = 25/324 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +  ++WL +L +  G S  T+Q Y    R FL +      E   I    Q+S   + A
Sbjct: 21  LRQLAESWLAHLVVA-GRSPRTVQGYRERVRAFLAWC-----EPRGITYAPQVSLAVLEA 74

Query: 74  FISKRRTQKIGD------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP- 126
           +    +  +  D       S    L+ I+   ++L +R +   +    +   K+   LP 
Sbjct: 75  YQRWLQGYRRADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPA 134

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           +  +E +   ++ ++   T         RN AIL LL+  G+R SE   L   ++   + 
Sbjct: 135 QVFSEAETRRVLQSLDAGTP-----PGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRG 189

Query: 187 TLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQ 244
            + ++ GKG K R+VP+  +    +  Y       L        LF   +G  L  G   
Sbjct: 190 VVNVRRGKGGKDRVVPVGHTALMWLGRYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLT 249

Query: 245 RYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
               R +R    L  +   H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V  
Sbjct: 250 AMAGRAIREGAHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAI 309

Query: 304 KNGGDWMMEIYDQTHPSITQKDKK 327
            +    + +++  THP+  ++ +K
Sbjct: 310 GH----LQKVHAHTHPAEKRRTEK 329


>gi|27383511|ref|NP_775042.1| class I integron integrase [Citrobacter freundii]
 gi|32455549|ref|NP_862305.1| DNA integrase IntI1 [Corynebacterium glutamicum]
 gi|133756208|ref|YP_001096358.1| hypothetical protein pLEW517_p33 [Escherichia coli]
 gi|169797581|ref|YP_001715374.1| integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE]
 gi|200388793|ref|ZP_03215405.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|226807703|ref|YP_002791398.1| IntI1 [Enterobacter cloacae]
 gi|226810014|ref|YP_002791708.1| IntI1 [Enterobacter cloacae]
 gi|297622202|ref|YP_003675754.1| IntIA [Klebsiella oxytoca KOX105]
 gi|301028321|ref|ZP_07191578.1| integron integrase [Escherichia coli MS 196-1]
 gi|317050213|ref|YP_004111329.1| integron integrase [Desulfurispirillum indicum S5]
 gi|5107035|gb|AAD39931.1|AF133699_1 integron In50 integrase [Pseudomonas aeruginosa]
 gi|9836716|gb|AAG00280.1|AF164956_12 DNA integrase IntI1 [Corynebacterium glutamicum]
 gi|10185692|gb|AAG14404.1|AF188331_3 putative integrase [Shigella flexneri]
 gi|12719023|gb|AAK02045.1|AF261825_14 integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|2385351|emb|CAA75043.1| int [Corynebacterium glutamicum]
 gi|3661459|gb|AAC64362.1| class I integrase [Pseudomonas aeruginosa]
 gi|4063851|gb|AAC98492.1| integrase [Salmonella typhimurium DT104]
 gi|5420398|emb|CAB46685.1| DNA integrase [Pseudomonas aeruginosa]
 gi|17383996|emb|CAC81318.1| IntI1 DNA integrase [Salmonella typhimurium]
 gi|17384003|emb|CAC81325.1| IntI1 DNA integrase [Salmonella typhimurium]
 gi|27261364|gb|AAN87705.1| class I integron integrase [Citrobacter freundii]
 gi|34556054|emb|CAE46709.1| DNA integrase [Pseudomonas aeruginosa]
 gi|34556062|emb|CAE46716.1| DNA integrase [Pseudomonas aeruginosa]
 gi|57208125|emb|CAI40605.1| class 1 integrase [Corynebacterium amycolatum]
 gi|66277417|gb|AAY44597.1| class 1 integron integrase [Enterobacter cloacae]
 gi|82653445|emb|CAG23925.2| type I integrase [Pseudomonas aeruginosa]
 gi|83627316|dbj|BAE54317.1| integrase [Escherichia coli]
 gi|85376217|gb|ABC70304.1| IntI1 [Pseudomonas aeruginosa]
 gi|85376219|gb|ABC70305.1| IntI1 [Pseudomonas aeruginosa]
 gi|90265346|emb|CAJ77028.1| Integrase [Acinetobacter baumannii]
 gi|110084043|gb|ABG49197.1| hypothetical protein [Escherichia coli]
 gi|118402688|emb|CAI94346.1| type I integrase [Pseudomonas aeruginosa]
 gi|118402758|emb|CAI43354.1| integrase/recombinase [Pseudomonas aeruginosa]
 gi|122891987|gb|ABM67075.1| IntI1 integrase [Aeromonas caviae]
 gi|148455793|gb|ABQ65133.1| IntI1 [Pseudomonas putida]
 gi|151564272|gb|ABS17587.1| integrase [Klebsiella pneumoniae]
 gi|166865480|gb|ABZ01842.1| IntI1 [Salmonella enterica subsp. enterica]
 gi|169150508|emb|CAM88414.1| Integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE]
 gi|187369485|dbj|BAG31351.1| class 1 integrase IntI1 [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|193783422|emb|CAE81269.2| IntI1 [Klebsiella pneumoniae]
 gi|199605891|gb|EDZ04436.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|226425929|gb|ACO54022.1| IntI1 [Enterobacter cloacae]
 gi|226426240|gb|ACO54332.1| IntI1 [Enterobacter cloacae]
 gi|253558898|gb|ACT32121.1| IntI1 [Pseudomonas putida]
 gi|255039694|gb|ACT99624.1| IntI1 [Pseudomonas aeruginosa]
 gi|265509433|gb|ACY75520.1| integrase [Pseudomonas aeruginosa]
 gi|265509448|gb|ACY75535.1| integrase [Pseudomonas aeruginosa]
 gi|296492021|gb|ADH29523.1| IntI1 [Klebsiella oxytoca KOX105]
 gi|297593574|gb|ADI47529.1| IntI1 integrase [Klebsiella pneumoniae]
 gi|298104544|gb|ADI55012.1| class I integron integrase [Aeromonas caviae]
 gi|299878615|gb|EFI86826.1| integron integrase [Escherichia coli MS 196-1]
 gi|312914891|dbj|BAJ38865.1| IntI1 [Salmonella enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|312915760|dbj|BAJ39733.1| IntI1 [Salmonella enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|316945297|gb|ADU64773.1| integron integrase [Desulfurispirillum indicum S5]
 gi|321159227|gb|ADW66520.1| DNA integrase [Enterobacter aerogenes]
 gi|321268198|gb|ADW78905.1| IntI [Escherichia coli]
 gi|332144420|dbj|BAK19640.1| class 1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|332144565|dbj|BAK19780.1| class 1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 337

 Score =  192 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 139/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLPTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|326794173|ref|YP_004311993.1| integrase family protein [Marinomonas mediterranea MMB-1]
 gi|326544937|gb|ADZ90157.1| integrase family protein [Marinomonas mediterranea MMB-1]
          Length = 323

 Score =  192 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 72/313 (23%), Positives = 131/313 (41%), Gaps = 27/313 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +LQ  +  R LS  TL++Y  D +QF+      T       ++  +   ++  F     
Sbjct: 10  RYLQFCQKNRKLSGHTLKAYRIDLKQFVECTGVKT-------SVNAIDKKDLHKFHDYLA 62

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-RNLKKSNSLPRALNEKQALTLV 138
             ++   S+KR L+ I++  ++L++ +    +       ++K    LPR +N+     ++
Sbjct: 63  DSELSQSSIKRKLACIRAMFRWLEQEEEIEVTPFHKFNTSIKLPKRLPRNVNKSDLKRML 122

Query: 139 --------DNVLLHTSHETKWIDARN----------SAILYLLYGCGLRISEALSLTPQN 180
                      L   S E                  +  L L+   G+R+SE + +   +
Sbjct: 123 TQGRRTLDQKPLKSISDENTGFSYPTSKRDLNKLTGTLALELMLSTGMRVSELVGIQLDD 182

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I   +  ++I GKG + R V L       ++ +Y      +  +    L    RG+P + 
Sbjct: 183 IFLTERKIKIFGKGSRERYVYLPDKEICQLIRHYRKARTIVESDSSNFL-LNSRGQPAST 241

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              ++ IR L       L  T H LRHS A  L+ +G D+R +Q +LGH  +STT+IYT+
Sbjct: 242 QFIRKLIRLLAEQSSTQLHVTPHMLRHSAACELMESGLDIRFVQRLLGHSSISTTEIYTH 301

Query: 301 VNSKNGGDWMMEI 313
           V        + + 
Sbjct: 302 VTDNVLQTKIEKA 314


>gi|169830964|ref|YP_001716946.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637808|gb|ACA59314.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 283

 Score =  192 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 127/296 (42%), Gaps = 22/296 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +L+  RGLS  T+ +Y    R F  +      E     ++  L   + R        
Sbjct: 4   FLDHLKA-RGLSVQTVGTYAAAVRAFAKWWEGTGGEAFDPASVSSLDVADYRR---HLLN 59

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     ++   L  + SF  +     +        +R +    S PR L  ++   LV  
Sbjct: 60  KNRKPATVNLHLDALSSFFSWAVSTGLALIDPTEGVRRVPGQKSSPRWLTRRELGALVRA 119

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKI 197
           V  H +         + A++ LL   GLR+SEA+SL  Q+ +  + +  +   +GKG+K 
Sbjct: 120 VQKHGASR-------DRALVALLLHAGLRVSEAVSLKVQDAVIRERSGHVAVRRGKGEKY 172

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R VPL  + RK I E+ D  P          LF G  G P+ P   Q+ +++L R  G+ 
Sbjct: 173 REVPLNATARKMIQEWLDGHP------GGEYLFPGRNGGPMTPRAVQKRLKELARLAGVE 226

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              T H LRH+F   L+  G  L  +  + GH  L+TT  YT    ++    + ++
Sbjct: 227 --VTPHKLRHTFCKMLVDAGESLDRVAVLAGHANLNTTARYTRPGVQDLERAVEKL 280


>gi|306842844|ref|ZP_07475484.1| site-specific tyrosine recombinase XerD [Brucella sp. BO2]
 gi|306287038|gb|EFM58549.1| site-specific tyrosine recombinase XerD [Brucella sp. BO2]
          Length = 247

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 76/251 (30%), Positives = 114/251 (45%), Gaps = 10/251 (3%)

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q     S  R LS ++ F ++L       +     +   KK   LP+ ++ +    L
Sbjct: 1   MAAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGKL 60

Query: 138 VDNVLLHTSHETKW----IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           +D   L      +        R  A+L  LY  GLR+SE + L       D   L ++GK
Sbjct: 61  LDRAALEADEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGK 120

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRR 252
           G K R+VPL    R+A+ ++  L       +    LF        L   VF R ++ L  
Sbjct: 121 GSKDRMVPLSRKAREALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAA 180

Query: 253 YLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             GL  S  + H LRH+FA+HLL NG DLR++Q +LGH  +STTQIYT+V  +     + 
Sbjct: 181 RAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER----LH 236

Query: 312 EIYDQTHPSIT 322
           ++  + HP   
Sbjct: 237 KLVSEHHPLAD 247


>gi|307354005|ref|YP_003895056.1| integrase family protein [Methanoplanus petrolearius DSM 11571]
 gi|307157238|gb|ADN36618.1| integrase family protein [Methanoplanus petrolearius DSM 11571]
          Length = 302

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 76/324 (23%), Positives = 137/324 (42%), Gaps = 45/324 (13%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQF---LIFLAFYTEEKI-------------T 59
           +  + +  +L + R  S  T+ SYE   ++F   L       +EK+             T
Sbjct: 8   EWLKRFSHHLRM-RNFSPRTIASYEGAVKKFGYYLWIRRNMGQEKLVIYWNDLANARLDT 66

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
                 +   +  AF++  R       +L+R +S + SF +Y   + +   + +  +   
Sbjct: 67  EIDTTPMMINDFLAFLTSLRD--YKATTLQRIISSLSSFYRYCYTQGVVDSNPLAAIDRP 124

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K      R L   Q L+L +++           + R+  I+  +Y  G+R+SE  S+  +
Sbjct: 125 KIKEKELRYLKHNQVLSLFNSI----------NNERDRLIIRTIYATGVRVSELCSINIE 174

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           +I  +   +R++GKG KIR V +     + I  Y        +  I  PLF G +GK ++
Sbjct: 175 DIDFEDRIIRVKGKGGKIRTVFIDEDTLQDINHY-------TSGRISGPLFEGQQGKNIS 227

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           P   Q    +       P   T H +RHS+A+ L     +LR +Q  LGH  + TT++Y 
Sbjct: 228 PRTVQHIFERYA-----PTGITPHKIRHSYASELYRRSKNLRVVQENLGHSSIQTTEVYL 282

Query: 300 NVNSKNGGDWMMEIYDQTHPSITQ 323
           + +     D   E+Y +  P   +
Sbjct: 283 HTD----IDERREVYKKYFPLSKE 302


>gi|291557723|emb|CBL34840.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a]
          Length = 357

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 86/342 (25%), Positives = 151/342 (44%), Gaps = 39/342 (11%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-------------EKITIQTIRQL 66
            +L  L   +  S+LT  +Y  D R F+ FL    +               +  + I+ +
Sbjct: 20  EYLNYLTTIKNRSQLTALNYYTDLRMFMRFLKVKNKLVDANEDFSEIKISDLDDKYIKAV 79

Query: 67  SYTEIRAFIS---KRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILNMRNLKKS 122
           + T+   F+S     R+ +   RS  R    ++ F K+L   K     S +LN+      
Sbjct: 80  TLTDAMEFLSFTVSERSNQAKARS--RKAVSLRQFYKFLTNNKAWFAASPMLNLELPSPK 137

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           N+LP+ L  ++   L+       S    W+D R+ A++ +   CG+R+SE + +T  + +
Sbjct: 138 NALPKHLTLQECGQLLHEGFKEFS---SWMDYRDYAMIIMFLNCGMRLSELVGITVNDFV 194

Query: 183 DDQS---------TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
           ++           ++++ GKG+K RIV L      A+ +Y +      +   +  LF   
Sbjct: 195 ENIDPSQPCVKYLSVKVLGKGNKERIVYLNEQCVDAVTKYTEARKSVADPK-EKALFISK 253

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           RG  +     ++ I    +  GL     + H LRH+ AT +  NG D+R ++ +LGH  L
Sbjct: 254 RGNRITNRRVEQIIDDRLKACGLAGKGISVHKLRHTAATLMYQNGVDVRVLKEVLGHENL 313

Query: 293 STTQIYTNVNSKNGGDWMME------IYDQTHPSITQKDKKN 328
           +TTQIYT+V +    D +          D   P + Q + KN
Sbjct: 314 NTTQIYTHVVNTQLRDAINSNPVMDIKNDLPEPDLKQDEDKN 355


>gi|227461184|gb|ACP39539.1| putative integron integrase [uncultured microorganism]
          Length = 317

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 139/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|291530765|emb|CBK96350.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 357

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 85/342 (24%), Positives = 147/342 (42%), Gaps = 39/342 (11%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-------------EKITIQTIRQL 66
            +L  L   +  S+LT  +Y  D R F+ FL    +               +  + I+ +
Sbjct: 20  EYLNYLTTIKNRSQLTALNYYTDLRMFMRFLKVKNKLVDANEDFSEIKISDLDDKYIKAV 79

Query: 67  SYTEIRAFIS---KRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILNMRNLKKS 122
           + T+   F+S     R+ +   RS  R    ++ F K+L   K     S +LN+      
Sbjct: 80  TLTDAMEFLSFTVSERSNQAKARS--RKAVSLRQFYKFLTNNKAWFAASPMLNLELPSPK 137

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI- 181
           N+LP+ L  ++   L+       S    W+D R+ A++ +   CG+R+SE + +   +  
Sbjct: 138 NALPKHLTLQECGQLLHEGFKEFS---SWMDYRDYAMIIMFLNCGMRLSELVGINVNDFV 194

Query: 182 --------MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
                        ++++ GKG+K RIV L      A+ +Y +      +   +  LF   
Sbjct: 195 ENIDPSQPDVKYLSVKVLGKGNKERIVYLNEQCVDAVTKYTEARKSVADPK-EKALFISK 253

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           RG  +     ++ I    +  GL     + H LRH+ AT +  NG D+R ++ +LGH  L
Sbjct: 254 RGNRITNRRVEQIIDDRLKACGLAGKGISVHKLRHTAATLMYQNGVDVRVLKEVLGHENL 313

Query: 293 STTQIYTNVNSKNGGDWMME------IYDQTHPSITQKDKKN 328
           +TTQIYT+V +    D +          D   P + Q + KN
Sbjct: 314 NTTQIYTHVVNTQLRDAINSNPVMDIKNDLPEPDLKQNEDKN 355


>gi|77562727|gb|ABB00017.1| class 1 integrase [Pseudomonas aeruginosa]
          Length = 323

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 139/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLPTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|291615497|ref|YP_003522605.1| integrase family protein [Nitrosococcus halophilus Nc4]
 gi|291582559|gb|ADE17015.1| integrase family protein [Nitrosococcus halophilus Nc4]
          Length = 310

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 80/320 (25%), Positives = 140/320 (43%), Gaps = 25/320 (7%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E  + +  + R+++L +L   +G S+ T   Y  D   +  +L          +  RQ +
Sbjct: 2   EKKAVDFWQARKDFLAHLHYTKGYSQGTCYGYNSDLGIWGRWLEEAD------KDWRQAT 55

Query: 68  YTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           + +   F++   R +      + R  S + SF K+  K  +     I      K+   +P
Sbjct: 56  HVDTEQFVAWQMRERGTKAHIVARRSSCLGSFYKWAMKNALVESDPIYLADKPKRPYRIP 115

Query: 127 RALNEKQ----------ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             L +++             L +N+        K I  R   +  L+   GLRISEAL++
Sbjct: 116 IWLEKEEQLAFQEAVRRVDDLPENIFGRPREHIKAIRRRYDFLFGLILNSGLRISEALAV 175

Query: 177 TPQNIMDDQST---LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
             +++         +R+ GKG++ R+VPL  +  +    +      D  +  + P     
Sbjct: 176 KIRDVRIVNGVAKSVRVIGKGNRERLVPLPEAFGQVFGAWLQGRGGDDFVFAKAP----- 230

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
             KP  P   + Y+R+L    G+    T H LRH++AT LL  G +L  IQ +LGH  LS
Sbjct: 231 GEKPPGPHAVRTYLRRLIERAGIDKPVTPHKLRHTYATRLLEAGAELVDIQVLLGHVDLS 290

Query: 294 TTQIYTNVNSKNGGDWMMEI 313
           TTQIYT+V+ +     + ++
Sbjct: 291 TTQIYTHVSEERMAGVVAKL 310


>gi|155024|gb|AAA72104.1| integrase [Shigella sonnei]
          Length = 337

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 77/334 (23%), Positives = 138/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++        S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYF----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|241992508|gb|ACS73589.1| IntI1 [uncultured bacterium]
          Length = 315

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 138/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +        +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWPQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|295135108|ref|YP_003585784.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
 gi|294983123|gb|ADF53588.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
          Length = 363

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 74/286 (25%), Positives = 135/286 (47%), Gaps = 30/286 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N+L  LE++R  S  T+++Y     +F+   +         + I  L   EIR F+   
Sbjct: 96  ENYLLKLELKR-YSVSTIKTYVTFFEKFINHYSQ--------RDIDSLDECEIRLFLQSL 146

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +   +  + ++++ IK + + +        +   +M   ++ + LP+ ++ ++   ++
Sbjct: 147 IQENKSNSYINQAINAIKFYYEVVCGM----PNRFYDMERPRREHRLPQVISREEIFAII 202

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKI 197
           +N            + ++  I+ LLY  GLR SE L+L  Q+I   +  ++I+ GKG+K 
Sbjct: 203 ENT----------NNIKHRCIVELLYSSGLRRSELLNLKLQDIDSKRMLIKIKAGKGNKD 252

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R   L       + +YY           ++ LF G  GK  +     + ++         
Sbjct: 253 RFTILSEKCLAHLRQYYR------KWKPEIYLFEGQPGKQYSGASVLKVVKNASSKAKPN 306

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            + + H LRHSFATHLL +G DLR IQ +LGH    TT+IYT+V +
Sbjct: 307 KNISPHILRHSFATHLLESGVDLRKIQVLLGHGSTKTTEIYTHVAT 352


>gi|167628727|ref|YP_001679226.1| phage integrase [Heliobacterium modesticaldum Ice1]
 gi|167630972|ref|YP_001681471.1| phage integrase [Heliobacterium modesticaldum Ice1]
 gi|167591467|gb|ABZ83215.1| phage integrase [Heliobacterium modesticaldum Ice1]
 gi|167593712|gb|ABZ85460.1| phage integrase [Heliobacterium modesticaldum Ice1]
          Length = 341

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 69/313 (22%), Positives = 122/313 (38%), Gaps = 16/313 (5%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-Q 81
             L  +   S+ T+++Y    +  L F            T+  +  + +  F+S   T Q
Sbjct: 16  AYLPGQCNASENTVRAYRDTFKLLLRFADTQRGICPERLTLADVDKSFVEGFLSWLETVQ 75

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRK---ITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                +    L+GI +F +YL+  K   +     +L++   +        L      T++
Sbjct: 76  GNAVSTRNHRLAGIHAFFRYLQSEKPDMMLQCQQVLSIPVKRTVKPTVNYLTVDAVKTIL 135

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLRIQGKGDKI 197
                     +     R+ A+L LLY  G R+SE + L P+++       + + GKG K 
Sbjct: 136 -----AMPDTSTVYGMRDLALLGLLYDTGARVSELIELRPKDLRLAAPPVVTLFGKGRKS 190

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG-- 255
           R  PL   +   +++Y      D       PLF G   + L        + +        
Sbjct: 191 RQCPLSSEMTGHLVKYLSAWGLDAPAKSDHPLFVGHNAEKLTRAGVAYILSKYASAAREK 250

Query: 256 ----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               +P   + H LRHS A HLL  G +L  I+  LGH  + TT+IY   +S+     + 
Sbjct: 251 DASIIPTIVSPHMLRHSKAMHLLQAGVNLVYIRDWLGHASVKTTEIYARADSEMKRAALQ 310

Query: 312 EIYDQTHPSITQK 324
           +      P  +++
Sbjct: 311 KAASTVMPQHSRQ 323


>gi|167749654|ref|ZP_02421781.1| hypothetical protein EUBSIR_00612 [Eubacterium siraeum DSM 15702]
 gi|167657407|gb|EDS01537.1| hypothetical protein EUBSIR_00612 [Eubacterium siraeum DSM 15702]
          Length = 357

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 85/342 (24%), Positives = 150/342 (43%), Gaps = 39/342 (11%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-------------EKITIQTIRQL 66
            +L  L   +  S+LT  +Y  D R F+ FL    +               +  + I+ +
Sbjct: 20  EYLNYLTTIKNRSQLTALNYYTDLRMFMRFLKVKNKLVDANEDFSEIKISDLDDKYIKAV 79

Query: 67  SYTEIRAFIS---KRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILNMRNLKKS 122
           + T+   F+S     R+ +   RS  R    ++ F K+L   K     S +LN+      
Sbjct: 80  TLTDAMEFLSFTVSERSNQAKARS--RKAVSLRQFYKFLTNNKAWFAASPMLNLELPSPK 137

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           N+LP+ L  ++   L+       S    W+D R+ A++ +   CG+R+SE + +   + +
Sbjct: 138 NALPKHLTLQECGQLLHEGFKEFS---SWMDYRDYAMIIMFLNCGMRLSELVGINVNDFV 194

Query: 183 DDQS---------TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
           ++           ++++ GKG+K RIV L      A+ +Y +      +   +  LF   
Sbjct: 195 ENIDPSQPCVKYLSVKVLGKGNKERIVYLNEQCVDAVTKYTEARKSVADPK-EKALFISK 253

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           RG  +     ++ I    +  GL     + H LRH+ AT +  NG D+R ++ +LGH  L
Sbjct: 254 RGNRITNRRVEQIIDDRLKACGLAGKGISVHKLRHTAATLMYQNGVDVRVLKEVLGHENL 313

Query: 293 STTQIYTNVNSKNGGDWMME------IYDQTHPSITQKDKKN 328
           +TTQIYT+V +    D +          D   P + Q + KN
Sbjct: 314 NTTQIYTHVVNTQLRDAINSNPVMDIKNDLPEPDLKQNEDKN 355


>gi|28558853|ref|NP_788113.1| putative integrase/recombinase [Ruegeria sp. PR1b]
 gi|22726404|gb|AAN05199.1| RC126 [Ruegeria sp. PR1b]
          Length = 313

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 72/304 (23%), Positives = 127/304 (41%), Gaps = 19/304 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             ++      + GLS+ +L++Y  D   F  F          +         +I  F   
Sbjct: 6   INDFENYCREQLGLSEHSLRAYRQDLAAFAKFKQKAKLNDPPL-------AADIIDFQKD 58

Query: 78  RRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNE---- 131
            R  Q +   +++R L  ++S+  +L +   +  S    +R +++    LPR ++     
Sbjct: 59  LREEQGVSPATIRRRLVTLRSYYGWLAENDTSCPSPFEGLRLDMRVPKRLPRPVDRPTLG 118

Query: 132 -----KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
                 Q +  +D     +  +          I  LL   GLRI E  SL   ++    +
Sbjct: 119 AVFRSAQHIVQLDPSDELSVPKEIPAAQITGLIARLLIVTGLRIGELTSLRVCDVSGAAT 178

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            +R++GKGD+ R V +     +   + +     D     Q  LF    G  L P  F++ 
Sbjct: 179 QIRVRGKGDRERTVYVANDRLQTDFKRFWEDRCD-AAGSQAWLFTNSMGDRLTPQAFRKR 237

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +R L + L +    T H  RHS AT L+  G D+R +Q +LGH  ++TT+IYT V+  + 
Sbjct: 238 LRTLSKSLRIEPHLTPHRFRHSAATLLIEEGVDIRLVQRLLGHASIATTEIYTKVSDNSL 297

Query: 307 GDWM 310
              +
Sbjct: 298 SSAV 301


>gi|303239825|ref|ZP_07326348.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302592535|gb|EFL62260.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 351

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 74/282 (26%), Positives = 129/282 (45%), Gaps = 31/282 (10%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R  S  T ++Y    R+ L F             I  +   +I+ ++ +          +
Sbjct: 85  RNYSVKTQKAYLGHVRRLLQFHKKC---------IDNIDKDDIKLYLLRLVDANKSAAYI 135

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            +++S  K     LK      +    +++  K+   LP  LN  +   ++++V       
Sbjct: 136 DQAVSAFKFLYIDLKN----IDDVDFDIKRPKREQKLPSVLNTNEVFKIIESVD------ 185

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVR 207
               + ++ AI+ L+Y  GLR+SEA +L  ++I   ++ + I+G KG K R   L  ++ 
Sbjct: 186 ----NLKHRAIIMLIYSAGLRVSEAANLRIEDIDSKRNLIHIKGAKGKKDRYTLLSNAML 241

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           + + +Y+ +         +  LF G    K +     Q+   +     G+    + HTLR
Sbjct: 242 ELLRQYFKIY------RPECWLFEGQNGEKHITVRSIQKVFEKAAFKAGVKKKVSVHTLR 295

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           HSFATHLL NG DLR IQ +LGH   STT+IYT+V+ ++   
Sbjct: 296 HSFATHLLENGTDLRYIQELLGHASPSTTEIYTHVSERDFAK 337


>gi|291166237|gb|EFE28283.1| integrase-recombinase [Filifactor alocis ATCC 35896]
          Length = 307

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 139/304 (45%), Gaps = 18/304 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L      +L+  E +  L+  T++SY+ D +Q+++FL    EE    + I       +  
Sbjct: 3   LENLVDEYLKVCENQNNLNYKTVKSYKLDLKQYMVFLD--KEENYYRKEI-------LCK 53

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEK 132
           +I    T+    +++KR ++ +K+F  YL    I   +  + +R  LK+   LP+ +   
Sbjct: 54  YIEMLHTKDYRVKTIKRKIATLKAFFSYLVYEDILEYNPFVKIRLRLKEPVILPKTIPIV 113

Query: 133 QALTLVDNVLLHTSHETKWIDAR-----NSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
               L   +     +  K          +  IL +L   G+RISE   L  + I   +  
Sbjct: 114 YLENLFKCLYDERDNADKNTYKYKALSRDIIILEILISTGIRISELCDLRKEQISYSERM 173

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           +RI GKGDK RI+P+     + + +          L I+   F       L+    +  I
Sbjct: 174 IRIYGKGDKERILPVYN---ENLWKEIKQYEELFGLEIKGYFFINRINNKLSDQSVRNMI 230

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++  +   +P++ T H  RH+FAT LL N  D R+IQ ILGH  ++TTQIYTN+ S    
Sbjct: 231 KKNCKKASIPINITPHMFRHTFATLLLENDVDSRNIQQILGHSSITTTQIYTNITSNKKI 290

Query: 308 DWMM 311
           + M 
Sbjct: 291 EIMK 294


>gi|148261334|ref|YP_001235461.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|326403318|ref|YP_004283399.1| putative transposase for insertion sequence element [Acidiphilium
           multivorum AIU301]
 gi|326404178|ref|YP_004284260.1| putative transposase for insertion sequence element [Acidiphilium
           multivorum AIU301]
 gi|146403015|gb|ABQ31542.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|325050179|dbj|BAJ80517.1| putative transposase for insertion sequence element [Acidiphilium
           multivorum AIU301]
 gi|325051040|dbj|BAJ81378.1| putative transposase for insertion sequence element [Acidiphilium
           multivorum AIU301]
          Length = 301

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 119/292 (40%), Gaps = 26/292 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ  L+++ + RGL   T + Y    + F  FL          +     +  +IR F   
Sbjct: 14  RQRMLEDMAM-RGLRSATQRDYIRFVQSFAAFLR---------RPPDTATAEDIRRFQVH 63

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +    +   ++  S+S ++ F      R          +   +    LP  L+  +   L
Sbjct: 64  QHESGVQPPTINCSVSALRFFFTVTLDR----PDLSRRLVLARSPRKLPDVLSVDEVGRL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
           ++               +  AIL   YG GLR+SE  SL   +I   +  +R+ QGKG K
Sbjct: 120 LEA----------APGIKYKAILGTAYGAGLRVSEVASLKVDDIDSTRMLIRVEQGKGRK 169

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLG 255
            R   L P +   +  ++        +     LF G     P++     R + +     G
Sbjct: 170 DRNAMLSPQLLALLRLWWTEGKRRGVMLPHGWLFPGRSAADPVSTRQINRAVHEAAEAAG 229

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +    + HTLRHSFATHLL    D+R IQ +LGH +L TT +Y  V +K   
Sbjct: 230 IRKRVSPHTLRHSFATHLLEQDVDIRVIQVLLGHSKLDTTALYARVATKTIR 281


>gi|88602489|ref|YP_502667.1| phage integrase [Methanospirillum hungatei JF-1]
 gi|88187951|gb|ABD40948.1| phage integrase [Methanospirillum hungatei JF-1]
          Length = 301

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 66/307 (21%), Positives = 134/307 (43%), Gaps = 39/307 (12%)

Query: 29  RGLSKLTLQSYECDTRQFLIFL------------AFYTEEKITIQTIRQLSYTEIRAFIS 76
           R  S+ TL SY+   R+F  F+             +  +E + ++T   +S ++I  ++ 
Sbjct: 2   RNYSQKTLSSYDLTIRRFGQFIWLTRSFRGDLSKKWEHKELLRLETGVDVSASDISRYLE 61

Query: 77  KRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                ++    +  R LS + SF ++L  +++   + +  +   K      + L   Q +
Sbjct: 62  FLSLDRQYHATTYNRILSSLSSFYRFLLMQEVVETNPVPRIDRPKVKEKELKYLKHSQVM 121

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+ ++           D R+  ++ ++Y  G+R+SE  ++  +++  D   +R+ GKG 
Sbjct: 122 RLLQSI----------PDERDRLMIRIIYATGVRVSELCTMNVEDVDFDDQMIRVLGKGG 171

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K+R+V +       I          +   +  PLF G  G  ++    Q   ++      
Sbjct: 172 KVRMVFVDEVTLNEIA-------GLIGNRLSGPLFPGQGGNHISVRTVQLIFKKYA---- 220

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            P   T H +RHS+A+ L     +LR +Q  LGH  + TT++Y + +     D   ++Y 
Sbjct: 221 -PPGITPHKIRHSYASELYRRSRNLRVVQENLGHASIKTTEVYLHTD----VDERRQVYR 275

Query: 316 QTHPSIT 322
           +  P +T
Sbjct: 276 EFFPLVT 282


>gi|241992647|gb|ACS73687.1| IntI1 [uncultured bacterium]
          Length = 315

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 139/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLPRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|214027192|gb|ACJ63266.1| IntI1 integrase [Escherichia coli]
          Length = 337

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 77/334 (23%), Positives = 138/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IY +V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYXHV 315


>gi|320534120|ref|ZP_08034661.1| putative site-specific tyrosine recombinase XerD [Actinomyces sp.
           oral taxon 171 str. F0337]
 gi|320133699|gb|EFW26106.1| putative site-specific tyrosine recombinase XerD [Actinomyces sp.
           oral taxon 171 str. F0337]
          Length = 222

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 107/226 (47%), Gaps = 17/226 (7%)

Query: 105 RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLY 164
              T+E     +R  +    LP+AL   +   L++        +   +  R+ A+L +LY
Sbjct: 3   EGTTSEDPSATVRPPQPGRRLPKALGIDEVRLLLE----AAGVDDSPVSLRDRALLEVLY 58

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
             G RISEA+ L   ++  D   LR+ GKG K R+VP+     +A+  Y       L   
Sbjct: 59  ATGARISEAVGLVIDDLDTDSRLLRLFGKGRKERVVPMGTYAWEALDAYLVRGRPVLAEK 118

Query: 225 IQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGL-------PLSTTAHTLRHSFATHLLS 275
            +    +F    G+PL+       ++Q     GL           + HTLRHSFATHLL+
Sbjct: 119 GRGVPQVFLNTLGRPLSRQSAWAVLQQAAERAGLIGVDSADRRRISPHTLRHSFATHLLA 178

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            G D+R +Q +LGH  ++TTQIYT V      D + E+Y  +HP  
Sbjct: 179 GGADVRVVQEMLGHASVTTTQIYTKVT----VDHLREVYATSHPRA 220


>gi|148380317|ref|YP_001254858.1| phage integrase [Clostridium botulinum A str. ATCC 3502]
 gi|148289801|emb|CAL83909.1| phage integrase [Clostridium botulinum A str. ATCC 3502]
          Length = 331

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 73/311 (23%), Positives = 140/311 (45%), Gaps = 27/311 (8%)

Query: 6   LPE---IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
           LPE   +++ ++ ++ Q +L + +++ GLS  TL++Y+ +   F   L          + 
Sbjct: 44  LPEETGLMASDIEEKLQIYLASKKLD-GLSIKTLRNYQYNLAIFANHLR---------KP 93

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +  ++  ++R F++  R + +   S+   +S +KSF  +L   +   ++    ++  K+ 
Sbjct: 94  LVAINTMDLRMFLA-VRCKSMKQSSVNGQISILKSFFGWLADEEYIPKNPAKKLKQTKEP 152

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             L  A+ E++   L                    A++  L   G R+SEA+ +   +I 
Sbjct: 153 KRLRHAMTEEEIELLRQACKTDRE----------KALVEFLISTGCRLSEAVGVNKDDIN 202

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
             + +L + GKGDK R V      +  + +Y      +   NI L +        L    
Sbjct: 203 WYEMSLNVIGKGDKERKVYFSTKAKILLKKYLLARSDE---NIALFVTSKKPYGRLGGRS 259

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            QR I+++    G+  S   H  RHSFAT+ L+ G  +  IQ ++GH   +TTQIY  ++
Sbjct: 260 VQREIKKIASRAGINKSIYPHLFRHSFATNKLNAGMPMPVIQHLMGHESPATTQIYAELS 319

Query: 303 SKNGGDWMMEI 313
            +N      +I
Sbjct: 320 EENIKHEYKKI 330


>gi|61398373|gb|AAX46051.1| integrase [Pseudomonas aeruginosa]
          Length = 337

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 139/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLPTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSCLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|148994208|ref|ZP_01823501.1| tyrosine recombinase [Streptococcus pneumoniae SP9-BS68]
 gi|168488872|ref|ZP_02713071.1| tyrosine recombinase XerD [Streptococcus pneumoniae SP195]
 gi|147927349|gb|EDK78380.1| tyrosine recombinase [Streptococcus pneumoniae SP9-BS68]
 gi|183572517|gb|EDT93045.1| tyrosine recombinase XerD [Streptococcus pneumoniae SP195]
 gi|332073382|gb|EGI83861.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus
           pneumoniae GA17570]
          Length = 298

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 84/296 (28%), Positives = 128/296 (43%), Gaps = 26/296 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L   +  + LS  T+++Y+ D  QF                     Y  + ++I     
Sbjct: 9   YLDYCKTHKRLSSHTIRAYKNDLMQFYNS-----------------DYDHVESYIEHLTQ 51

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQA----L 135
             I   +L+R ++ +K F  YLK + I  E+    +R   +    LP+ +         +
Sbjct: 52  SNIKTNTLRRKIACMKVFYNYLKYQNIIEENPFNQLRFQFRTEKILPKTIPYDILKNIFI 111

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L   V++  +   K    RN  I+ LL   G+RISE   +  ++I     TL I GKG 
Sbjct: 112 YLEQKVVISKTDYQKQKAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLHIIGKGK 171

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYL 254
           K RI+ L       ILE Y              LF G    KPL+    +  ++++    
Sbjct: 172 KERILFLGDQTTFNILETYINKT---GKESNDFLFPGKHLPKPLSEQSVRLILKRIVEQN 228

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            L  + T H  RHSFAT LL N  D+R IQ ILGH  +S TQIYT+V+     + +
Sbjct: 229 SLSKTITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISVTQIYTHVSHSKQKEIL 284


>gi|134298831|ref|YP_001112327.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134051531|gb|ABO49502.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 324

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 68/303 (22%), Positives = 133/303 (43%), Gaps = 30/303 (9%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P+    +  ++   +L + ++E GLS+ T+  Y      F  ++          + ++++
Sbjct: 41  PDSNLADANQKLNMFLLSKKME-GLSEKTIDKYRKTILDFAKYVN---------KPLKRI 90

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           +  +IR ++S R    I   +++  L+ ++SF  YL   +I        +++ K    +P
Sbjct: 91  TTADIRTWLSNR---DIKISTVRYRLAVLRSFYNYLLAEEIVAVDPTRRIKSPKLEKRIP 147

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           +ALN  +   L +               R  A+L + Y  G RI E       +I   + 
Sbjct: 148 KALNNDELEVLREGC----------NTLREKALLEIFYATGCRIGEVFGANKIDINWQER 197

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQ 244
           +L + GKG+K RIV +      ++ +Y +        + +  LF   +   + L+    Q
Sbjct: 198 SLVVLGKGNKERIVFIGARAAHSLKKYLNSRQ-----DNEDALFVTEKGKIQRLSVRSIQ 252

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              +++   + +  +   H  RH+ AT LL++G  L  +Q +LGH   STTQIY  V+ +
Sbjct: 253 LIFKKIANRVVIHKNIYPHIFRHTLATALLNHGARLEDVQDLLGHTNPSTTQIYCKVSPE 312

Query: 305 NGG 307
              
Sbjct: 313 RKK 315


>gi|241992512|gb|ACS73592.1| IntI1 [uncultured bacterium]
 gi|241992515|gb|ACS73594.1| IntI1 [uncultured bacterium]
 gi|241992526|gb|ACS73602.1| IntI1 [uncultured bacterium]
 gi|241992530|gb|ACS73605.1| IntI1 [uncultured bacterium]
 gi|241992537|gb|ACS73610.1| IntI1 [uncultured bacterium]
 gi|241992541|gb|ACS73613.1| IntI1 [uncultured bacterium]
 gi|241992546|gb|ACS73616.1| IntI1 [uncultured bacterium]
 gi|241992555|gb|ACS73622.1| IntI1 [uncultured bacterium]
 gi|241992568|gb|ACS73632.1| IntI1 [uncultured bacterium]
 gi|241992575|gb|ACS73637.1| IntI1 [uncultured bacterium]
 gi|241992618|gb|ACS73667.1| IntI1 [uncultured bacterium]
 gi|241992621|gb|ACS73669.1| IntI1 [uncultured bacterium]
 gi|241992633|gb|ACS73677.1| IntI1 [uncultured bacterium]
 gi|241992638|gb|ACS73681.1| IntI1 [uncultured bacterium]
 gi|241992641|gb|ACS73683.1| IntI1 [uncultured bacterium]
 gi|241992644|gb|ACS73685.1| IntI1 [uncultured bacterium]
          Length = 315

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 139/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|296163709|ref|ZP_06846425.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886049|gb|EFG65951.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 321

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 78/317 (24%), Positives = 142/317 (44%), Gaps = 25/317 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L +  G ++ T++S      +F+ + A     + ++   ++L+ + + A+   
Sbjct: 4   VKGYLDWLAVT-GRTEQTVRSRLVALERFVRWCA-----ERSLSRPQELTRSVLEAYQRY 57

Query: 78  RR------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LN 130
                    + +  R+ +  L+ ++ + ++L + +    +    +   +    LP+  L+
Sbjct: 58  LYLYRKQDGKPLTIRTQQTMLTPLRGWCRWLSRERHVQYNAAAELVLPRAPKLLPKVVLS 117

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             Q   L+D              AR+ AIL +LY  G+R  E + LT  +I     T+ I
Sbjct: 118 VVQVERLMDQ-----PDVGGLTGARDRAILEVLYSTGMRRMELIGLTISDIDLSGGTVMI 172

Query: 191 Q-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIR 248
           + GKG + R +PL       +  Y D       +      LF    G+P   G     ++
Sbjct: 173 RQGKGRRDRYIPLGERACYWVEWYCDRIRPSHAVRADEWTLFLTDYGEPFGKGRLSDLVK 232

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     G+      H LRH+ ATH+L NG D+R IQ++LGH  LS+TQIYT V       
Sbjct: 233 RYMERAGI-REGACHVLRHACATHMLENGADIRFIQALLGHADLSSTQIYTQV----AIG 287

Query: 309 WMMEIYDQTHPSITQKD 325
            + EI+  THP+  ++D
Sbjct: 288 KLKEIHAATHPAKLERD 304


>gi|153930897|ref|YP_001385278.1| phage integrase family integrase/recombinase [Clostridium botulinum
           A str. ATCC 19397]
 gi|152926941|gb|ABS32441.1| integrase/recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 19397]
          Length = 331

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 72/306 (23%), Positives = 138/306 (45%), Gaps = 24/306 (7%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
            +V+ ++ ++   +L   +++ GLS  TL++Y+ +   F  +L          + +  ++
Sbjct: 49  ALVASDIEEKISIYLAAKKLD-GLSLKTLKNYKYNLAIFADYLR---------KPLATIN 98

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
             ++R F+++ R + +   S+   +S +KSF  +L   +   ++  L ++  K+   +  
Sbjct: 99  AMDLRMFLAQ-RCKHMKASSVNGQISILKSFFGWLHMEEYIPKNPSLKLKQTKQPKRVRH 157

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           ALNE++   L                    A++  L   G R+SE + +   +I  ++ +
Sbjct: 158 ALNEEEIEILRQACETDRE----------KALIEFLISTGCRLSEVIGVNKTDIDWNEMS 207

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           L + GKGDK R V      +  + +Y      +   NI L +        L     QR I
Sbjct: 208 LFVIGKGDKERKVYFNTKAKILLKKYLLTRSDE---NIALFVTSKKPHNRLGGRSIQREI 264

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           + +     +  S   H  RHSFATH L++G  L  IQ ++GH   STTQ+Y  ++ +N  
Sbjct: 265 KNIAIRAKIDKSIYPHLFRHSFATHKLNSGMPLPVIQHLMGHENPSTTQVYAELSEENVM 324

Query: 308 DWMMEI 313
               +I
Sbjct: 325 HEYKKI 330


>gi|161867961|ref|YP_001598142.1| hypothetical protein pOU7519_99 [Salmonella enterica subsp.
           enterica serovar Choleraesuis]
 gi|161087340|gb|ABX56810.1| IntI1 [Salmonella enterica subsp. enterica serovar Choleraesuis]
          Length = 337

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 76/334 (22%), Positives = 137/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T  T RH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPPTFRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|241992607|gb|ACS73659.1| IntI1 [uncultured bacterium]
          Length = 315

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 79/334 (23%), Positives = 140/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +  L  F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWLWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|241992564|gb|ACS73629.1| IntI1 [uncultured bacterium]
          Length = 315

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 79/334 (23%), Positives = 140/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S LT Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLLTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLRERLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|241992559|gb|ACS73625.1| IntI1 [uncultured bacterium]
          Length = 315

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 138/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L +    ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLHERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|241992522|gb|ACS73599.1| IntI1 [uncultured bacterium]
          Length = 315

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 77/334 (23%), Positives = 139/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG + R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSRDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|257076713|ref|ZP_05571074.1| integrase/recombinase [Ferroplasma acidarmanus fer1]
          Length = 280

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 75/310 (24%), Positives = 146/310 (47%), Gaps = 34/310 (10%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ++ +E +++ + +  ER  S  T++ Y+     FL +           + +  + + ++ 
Sbjct: 2   DINRELKSFERFMITER-KSYYTIKEYKFLISGFLSYCN---------KDLSSIDFDDVE 51

Query: 73  AFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
            + +   T+K     S   ++  ++ + K+        ++   N+   ++S  +P  LN+
Sbjct: 52  NYKNFIVTEKQYSKASQYLAMKALRLYYKFK------NKNTPPNLIPPRRSQKMPVYLNQ 105

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           K A  L+                R+ A++ +    G+R+SE  +L   ++  D++ + I 
Sbjct: 106 KDAGVLI----------NGAKSIRDIAVISVFLYTGIRVSELTNLQIGDVDFDENIIYIH 155

Query: 192 -GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKGDK RIV +    R+ I  Y        + N    LF   +    +    +R ++++
Sbjct: 156 AGKGDKDRIVVMPDICREHIKSYMKERIRIKSSNN--YLFISNKKTKFDTSTVERMVKRV 213

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  G+  + T H LRH+FAT +L NGGD+R IQ ILGH  L+TTQIYT+++     + +
Sbjct: 214 AKNAGITKNVTPHVLRHTFATSILRNGGDIRFIQQILGHSSLATTQIYTHIDD----NTL 269

Query: 311 MEIYDQTHPS 320
            E+Y +  P 
Sbjct: 270 KEMYSRHMPK 279


>gi|241992552|gb|ACS73620.1| IntI1 [uncultured bacterium]
          Length = 337

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 77/334 (23%), Positives = 138/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLHEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVTLPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT  L +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATASLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|302874512|ref|YP_003843145.1| integrase family protein [Clostridium cellulovorans 743B]
 gi|307690879|ref|ZP_07633325.1| site-specific tyrosine recombinase XerC [Clostridium cellulovorans
           743B]
 gi|302577369|gb|ADL51381.1| integrase family protein [Clostridium cellulovorans 743B]
          Length = 311

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 79/296 (26%), Positives = 139/296 (46%), Gaps = 25/296 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIF--------LAFYTEEKITIQTIRQLSYT 69
            + +L  L I +  S+ T+  Y  D   F  +        +A     +I ++ I+ ++  
Sbjct: 10  VEQYLGYLSIIKNRSENTILEYRIDLLMFFSYILKSRSITVADSNFAQIDLEFIKSINLN 69

Query: 70  EIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPR 127
           ++ +FIS  ++T      +  R +  I+ F KYLK +    ++NI   +   K    +P+
Sbjct: 70  DMYSFISYCQKTLNSSAGTRARKIVSIRQFWKYLKTKAHVIDNNIAEELETPKLPKRIPK 129

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            LN +++  L+                R+  I+ +   C LR+SE  SL    + +D  T
Sbjct: 130 YLNLEKSFRLLMECKKS---------IRDHCIITIFLNCALRLSELASLNIDQVNND--T 178

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           L + GKG+K R + L P+ +KAI  +  +    +N++    LF       +     Q  I
Sbjct: 179 LSVVGKGNKERKIFLTPAAKKAINNWLHIRN-SINVDTN-ALFISRNSNRITTRAIQNII 236

Query: 248 RQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTNV 301
           ++     GL   S + H LRH+ AT +   G  D+RS+Q ILGH  ++TT+IYT++
Sbjct: 237 KKYVLSSGLDSKSISTHKLRHTAATLMYKYGRVDIRSLQQILGHESVATTEIYTHI 292


>gi|241992627|gb|ACS73673.1| IntI1 [uncultured bacterium]
          Length = 315

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 139/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCADL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDTLERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|15808708|gb|AAL08437.1|AF326777_12 Tn21 integrase IntI1 [Shigella flexneri 2a]
          Length = 337

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 137/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + +              ++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRI-----------HGILEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|241992610|gb|ACS73661.1| IntI1 [uncultured bacterium]
          Length = 315

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 139/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALTALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|288927178|ref|ZP_06421058.1| phage-related integrase [Prevotella buccae D17]
 gi|315608604|ref|ZP_07883587.1| possible tyrosine recombinase [Prevotella buccae ATCC 33574]
 gi|288336047|gb|EFC74448.1| phage-related integrase [Prevotella buccae D17]
 gi|315249707|gb|EFU29713.1| possible tyrosine recombinase [Prevotella buccae ATCC 33574]
          Length = 342

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 75/308 (24%), Positives = 133/308 (43%), Gaps = 10/308 (3%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + + L  ERG+S  TL+SY      +L F+    E      T+  +    +  ++   +T
Sbjct: 14  FTEYLSAERGVSSNTLRSYGTAFASYLDFMRVKREVDAEKLTLEHMGRKNVLDYLDWLQT 73

Query: 81  QKIGD-RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            K     +  + L+ I +F +Y++   +T       +  +K   ++   +N      + +
Sbjct: 74  DKSSSVSTRNQRLAAIHAFCRYMQYEDVTRLYQWQEILGVKMKKAIKGTMNYLTMDAVKE 133

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQGKGDKIR 198
             LL    +T     R+ A+L LLY  G R+ E + L P ++   +   + + GKG+K R
Sbjct: 134 --LLAHIPQTTMRGRRDLAMLSLLYETGARVQELIDLRPVDVCLSKPYYVTLFGKGNKKR 191

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG--- 255
           +VP+  +    + +Y +          Q PLF+  RG  L        ++          
Sbjct: 192 LVPIQDAQVSILRKYMEENHLLELRMNQRPLFQNGRGGKLTGAGITYILKNYATMARTAS 251

Query: 256 ---LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +P   + H LRHS A HLL  G +L  I+ ILGH  + TT++Y   +SK   + + +
Sbjct: 252 ENLIPEKISPHCLRHSKAMHLLQAGVNLVYIRDILGHVSIQTTEVYARADSKQKREALEK 311

Query: 313 IYDQTHPS 320
            Y    P 
Sbjct: 312 TYTSILPQ 319


>gi|283479906|emb|CAY75822.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 351

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 85/324 (26%), Positives = 140/324 (43%), Gaps = 25/324 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +  ++WL +L +  G S  T+Q Y    R FL +      E   I    Q+S   + A
Sbjct: 21  LRQLAESWLAHLVVA-GRSPRTVQGYRERVRAFLAWC-----EPRGITXAPQVSLAVLEA 74

Query: 74  FISKRRTQKIGD------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP- 126
           +    +  +  D       S    L+ I+   ++L +R +   +    +   K+   LP 
Sbjct: 75  YQRWLQGYRRADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPA 134

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           +  +E +   ++ ++   T         RN AIL LL+  G+R SE   L   ++   + 
Sbjct: 135 QVFSEAETRRVLQSLDAGTP-----PGXRNRAILELLWSSGIRRSELAGLLLSDVDFTRG 189

Query: 187 TLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQ 244
            + ++ GKG K R+VP+  +    +  Y       L        LF   +G  L  G   
Sbjct: 190 VVNVRRGKGGKDRVVPVGHTALMWLGRYLKDVRPRLAQRFDSGXLFISHKGTGLAHGTLT 249

Query: 245 RYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
               R +R    L  +   H  RH  AT +L NG D R IQ+ILGH +L TTQIYT V  
Sbjct: 250 AMAGRAIREGAHLKXAGACHIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVAI 309

Query: 304 KNGGDWMMEIYDQTHPSITQKDKK 327
            +    + +++  THP+  ++ +K
Sbjct: 310 GH----LQKVHAHTHPAEKRRTEK 329


>gi|161507474|ref|YP_001577428.1| integrase-recombinase [Lactobacillus helveticus DPC 4571]
 gi|160348463|gb|ABX27137.1| Integrase-recombinase [Lactobacillus helveticus DPC 4571]
          Length = 242

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 70/250 (28%), Positives = 117/250 (46%), Gaps = 10/250 (4%)

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +     +K+   S  R +S + SF ++L +RK         +   +    LP      + 
Sbjct: 1   MQNLADRKLVRSSQARQMSSLHSFFRFLTRRKFIKIDPTQGITLRRGEKKLPEFFFGNEL 60

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             + D++        K +  RN A+  L Y  G+R+SE  +LT + I  +  T+ + GKG
Sbjct: 61  KQVFDSL-----KGNKPLTMRNLALFELFYATGMRVSEVSNLTLRQIDLNLQTILVHGKG 115

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           +K R V      +K+++ Y  D  P  L    +  +F    G PL+    +  +++    
Sbjct: 116 NKDRYVAFDDHTKKSLVRYLEDARPNLLKDETEQHVFLSNLGNPLSKRGIEYVMQKTFNQ 175

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+      H LRH+FAT +L+NG DLRS+Q +LGH  LS TQIYT+V   +    +   
Sbjct: 176 AGISGKVHPHELRHTFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAH----LKSD 231

Query: 314 YDQTHPSITQ 323
           Y++  P   +
Sbjct: 232 YEKYFPRNKE 241


>gi|45673|emb|CAA31355.1| unnamed protein product [Plasmid pLMO20]
          Length = 337

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 137/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + ++ L  +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQPLPALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|330832570|ref|YP_004401395.1| integrase family protein [Streptococcus suis ST3]
 gi|329306793|gb|AEB81209.1| integrase family protein [Streptococcus suis ST3]
          Length = 298

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 82/302 (27%), Positives = 141/302 (46%), Gaps = 29/302 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q +L    I+R LS  T+++Y+ D  Q+  F                    +IR++++ 
Sbjct: 6   IQRYLDFCAIQRRLSSHTIRAYKSDLHQYYNF-----------------GTNDIRSYLTF 48

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALT 136
                    +LKR ++ +KS+ K+L++ K+ +++    +R + K+   LP+ ++ K  L 
Sbjct: 49  LNQHIKKTSTLKRKIASLKSYYKFLEEEKLISKNPFHQLRLHYKEEKKLPKTISLKD-LQ 107

Query: 137 LVDNVLLHTSHETKWIDARNSAI-----LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            +          +K   +   A+     + LL   GLRISE  +L   NI  +  T++I 
Sbjct: 108 KIYCFAHQQIENSKNKHSMRKAMRNLLLISLLLSTGLRISELCNLKLDNINLENRTIQIL 167

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQL 250
           GKG K R++ +      ++LE Y         +    LF G++    L     +  ++ +
Sbjct: 168 GKGKKERLLYIGNDETLSLLEDYIAHHC----SHSSYLFTGVKNDDHLKEPSVRLILKNI 223

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              L L    T H  RHSFAT LL NG D+R IQ +LGH  ++ TQIYT+V+     + +
Sbjct: 224 SHSLQLKKHITPHMFRHSFATMLLDNGVDIRQIQHLLGHSNINVTQIYTHVSQSKQVEIL 283

Query: 311 ME 312
            E
Sbjct: 284 SE 285


>gi|322806579|emb|CBZ04148.1| integrase/recombinase (XerC/CodV family) [Clostridium botulinum
           H04402 065]
          Length = 330

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 73/313 (23%), Positives = 141/313 (45%), Gaps = 31/313 (9%)

Query: 6   LPE---IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
           LPE   +VS ++ ++ Q +L   +++ GLS+ TL++YEC+   F   L          + 
Sbjct: 43  LPEETALVSSDIEEKLQIYLATKKLD-GLSRKTLKNYECNLLIFADHLR---------KP 92

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +  ++  ++R F++  R + +   S+   +S +KSF  +L + +   ++    ++  K+ 
Sbjct: 93  LSTINTMDLRMFLT-VRCKSMKATSVNGQISILKSFFGWLHEEEYIPKNPAKKLKQTKEP 151

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             + + L E++   L  +                 A++  L   G R+SE + +   +I 
Sbjct: 152 KRVRKPLTEEEIELLRQSCKTDREE----------ALIEFLISTGCRLSEIVEVNKDDIN 201

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNP 240
             + +L + GKGDK R V      +  + +Y          +    LF   R     L  
Sbjct: 202 WHEMSLFVVGKGDKERKVYFSTKAKILLKKYLLTR-----ADNNEALFVTSRSPHNRLGG 256

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              QR I+++    G+  S   H  RHSFAT+ +++G  +  IQ ++GH   +TTQIY  
Sbjct: 257 RSIQREIKKIANMAGIEKSIHPHLFRHSFATYKINSGMPMPIIQHLMGHESPATTQIYAQ 316

Query: 301 VNSKNGGDWMMEI 313
           ++ +       +I
Sbjct: 317 LSEETVKYEYKKI 329


>gi|198240906|gb|ABG36697.2| integrase [Salmonella enterica subsp. enterica serovar Newport]
          Length = 337

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 77/334 (23%), Positives = 137/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L   +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDRLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+      +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLFWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|313674236|ref|YP_004052232.1| integrase family protein [Marivirga tractuosa DSM 4126]
 gi|312940934|gb|ADR20124.1| integrase family protein [Marivirga tractuosa DSM 4126]
          Length = 379

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 82/294 (27%), Positives = 147/294 (50%), Gaps = 30/294 (10%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
            ++ ++ +  +N+L  L  +R  +  T++SY      F  F+ +Y+++K+T     +L  
Sbjct: 99  ALAPDVKRCPENYLNEL-NQRRYACSTVKSY---IACFERFINYYSKKKMT-----ELGE 149

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            EI+ FI     +K  D S+   ++ IK + +     K+   +   +    +K   LP  
Sbjct: 150 EEIKKFIQNLIDKKYSDSSVNMHINAIKFYYE--VVEKM--PNRFYDFARPQKEERLPEV 205

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L++++ L ++ N            + ++  I+ LLY  GLR SE L+L   +I   + ++
Sbjct: 206 LSKEEILQMIANC----------HNLKHKCIVSLLYSAGLRRSELLNLKLTDIDSGRMSI 255

Query: 189 RIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
            I+  KG K RI  L  ++   +  Y+       +   ++ LF G +G+  +     + +
Sbjct: 256 LIRQAKGKKDRISILGNTILDDLRAYF------KSYRPKVFLFEGAQGQQYSSTSVSKIV 309

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           ++  +  G+    T H LRHSFATHLL  G DLR IQS+LGH   +TT+IYT+V
Sbjct: 310 KKTAQRAGIKKRVTPHMLRHSFATHLLEAGTDLRYIQSLLGHNNSNTTEIYTHV 363


>gi|259907778|ref|YP_002648134.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|259909773|ref|YP_002650129.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|259909780|ref|YP_002650136.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224963400|emb|CAX54888.1| integrase [Erwinia pyrifoliae Ep1/96]
 gi|224965395|emb|CAX56927.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
 gi|224965402|emb|CAX56934.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
 gi|283477639|emb|CAY73555.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
 gi|283479866|emb|CAY75782.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
 gi|283479875|emb|CAY75791.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 356

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 84/324 (25%), Positives = 142/324 (43%), Gaps = 25/324 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +  ++WL +L    G S  T+Q Y      FL +      E   I+   Q+S   + +
Sbjct: 21  LRRLAESWLAHLAAA-GRSPRTVQGYRERVLAFLAWC-----EPRGIRYAPQVSLAVLES 74

Query: 74  FISKRRTQKIGDRSL------KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP- 126
           +    R  +  D +L      +  LS I+  L++L +R     +    +   K+   LP 
Sbjct: 75  YQRYLRGYRKADGTLLAVNGQRHLLSAIRMLLRWLLQRHHILYNPAELLALPKEERRLPA 134

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           +  +E +   ++ ++   T         RN AIL LL+  G+R +E  +L   ++   + 
Sbjct: 135 QVFSEAETRRVLQSLDAGTP-----PGLRNRAILELLWSTGIRRTELANLLLSDVDAVRG 189

Query: 187 TLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQ 244
            + ++ GKG + R+VP+  +    +  Y       L        LF   +G  L      
Sbjct: 190 VVNVRRGKGGRDRVVPVGHTALIWLGRYLKDVRPRLAQRFDSGHLFISHKGTGLGRSTLT 249

Query: 245 RYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
               R +R    L  +   H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V  
Sbjct: 250 AMAGRAIREGAHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAI 309

Query: 304 KNGGDWMMEIYDQTHPSITQKDKK 327
            +    + +++  THP+  ++ +K
Sbjct: 310 GH----LQKVHAHTHPAEKRRTEK 329


>gi|148244009|ref|YP_001220247.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|146400572|gb|ABQ29105.1| phage integrase family protein [Acidiphilium cryptum JF-5]
          Length = 330

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 80/324 (24%), Positives = 126/324 (38%), Gaps = 28/324 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M    LP ++       ++ +   L ++   S+ T+  Y    R  L + +    +    
Sbjct: 1   MSAAALPALI-------QRFFTDRLCVQMEASRNTVAGYRDTFRLLLRYASARHVKPPVK 53

Query: 61  QTIRQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRK---ITTESNILNM 116
            TI  +    I  F+    T +    RS    L+ I+SF +Y+       +     IL M
Sbjct: 54  LTIEDIDADLIADFLVHTETARGNSARSRNTRLAAIRSFFRYVAMSDPTWLLQCQRILAM 113

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
            N +        L+  +   L     L     T W   R+ A+L L    GLR SE + L
Sbjct: 114 PNKRYVKRTVTFLDSDEIAAL-----LAAPDRTTWAGRRDHALLLLAVQTGLRASELVGL 168

Query: 177 TPQNIMDDQS-TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
              +++ +    +R  GKG K R  PL     K +  +        + N   PLF  IRG
Sbjct: 169 QCGDVVLESGAHIRCMGKGRKERATPLRRETVKLLAAWIGD-----DKNKSKPLFPSIRG 223

Query: 236 KPLNPGVFQRYIRQLRRYLGLP------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           + L+    +  +R+      L          T HTLRHS A  LL +G D   I   LGH
Sbjct: 224 ERLSRDALEHLVRKHCLTASLTCPSIGSKRVTPHTLRHSTAMDLLHHGVDPAVIALWLGH 283

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEI 313
             + TTQIY + + +     +  +
Sbjct: 284 ENVETTQIYIHADMRLKEKALARV 307


>gi|313205824|ref|YP_004045001.1| integrase family protein [Riemerella anatipestifer DSM 15868]
 gi|312445140|gb|ADQ81495.1| integrase family protein [Riemerella anatipestifer DSM 15868]
 gi|315022781|gb|EFT35805.1| Probable integrase [Riemerella anatipestifer RA-YM]
 gi|325336737|gb|ADZ13011.1| Integrase, catalytic core, phage [Riemerella anatipestifer RA-GD]
          Length = 358

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 81/292 (27%), Positives = 138/292 (47%), Gaps = 29/292 (9%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             + + ++L++ +G S+ TL++Y  +  Q L  L  +  ++++ + +R         F+ 
Sbjct: 85  AFELFQEHLKL-KGYSRNTLRTYAVEFAQLLYVLKDFPVDELSEERLRSY-------FLY 136

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                K+ +  +   ++ IK + +    RK        ++   KK   LP++LN+KQ L 
Sbjct: 137 CFENLKLSEAEINSRINAIKFYFEQALHRKKM----FFDIPRPKKKKQLPKSLNKKQILK 192

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195
           + +             + ++  +L L YG GLR+SE ++L  ++I  +   +RI   KG 
Sbjct: 193 IFEVT----------TNLKHRCMLQLCYGMGLRVSEIVNLKLEDICSETMRVRIENAKGK 242

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R+VPL  S+   +  YY           +  LF G  G   +    Q   +   R  G
Sbjct: 243 KDRMVPLPESILPELRAYYR------EYKPKKYLFEGQYGGMYSVRSVQSVFKTAMRKAG 296

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +  +   H LRHS+ATHLL  G D+R IQ  LGH  + TTQIYT V S++  
Sbjct: 297 INKTVGIHGLRHSYATHLLEMGTDIRYIQEFLGHNNIKTTQIYTQVTSEHQR 348


>gi|253755098|ref|YP_003028238.1| integrase [Streptococcus suis BM407]
 gi|251817562|emb|CAZ55309.1| integrase [Streptococcus suis BM407]
          Length = 295

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 78/297 (26%), Positives = 132/297 (44%), Gaps = 26/297 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N+L   +  + LS  TL++Y+ D  QF                        + ++I    
Sbjct: 8   NYLDYCKAHKRLSTHTLRAYKNDLMQFYNSNNEC-----------------VISYIEGLT 50

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLV 138
              +   +L+R ++ +K F  YL+ + + T++    +R   +   +LP+ ++      L 
Sbjct: 51  HSNLKTSTLRRKIASLKVFYGYLQLKNVITDNPFNQLRFQFRAEKTLPKTISHDSLKILY 110

Query: 139 ----DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
                 ++   +   K    RN  I+ LL   G+RISE   +  ++I   + TL+I GKG
Sbjct: 111 TYLQKKMISAKTIYQKQKAERNLLIVSLLLSTGIRISELCHIQIKDINLTEQTLQILGKG 170

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRY 253
            K R++ +       +L+ Y  C  +   +    LF G    KPL     +  ++  +  
Sbjct: 171 KKERMIFIGDERTFQLLKAYITCYCN---HTDDYLFPGKSLQKPLTEQSVRLLLKTAKTQ 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
             L  + T H  RHSFAT LL N  D+R IQ ILGH  +S TQIYT+V+     + +
Sbjct: 228 TRLTTTITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISITQIYTHVSQSRQKEIL 284


>gi|295133148|ref|YP_003583824.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
 gi|294981163|gb|ADF51628.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
          Length = 375

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 76/286 (26%), Positives = 135/286 (47%), Gaps = 30/286 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N+L  LE++R  S  T+++Y     +F+   +         + I  L   EIR F+   
Sbjct: 108 ENYLLKLELKR-YSVSTIKTYVTFFEKFINHYSQ--------RDIDSLDECEIRLFLQSL 158

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +   +  + ++++ IK    Y     +   +   +M   ++ + LP+ ++ ++   ++
Sbjct: 159 IQENKSNSYINQAINAIK--FNYEVVCGM--PNRFYDMERPRREHRLPQVISREEIFAII 214

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKI 197
           +N            + ++  I+ LLY  GLR SE L+L  Q+I   +  ++I+ GKG+K 
Sbjct: 215 ENT----------NNIKHRCIVELLYSSGLRRSELLNLKLQDIDSKRMLIKIKAGKGNKD 264

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R   L       + +YY           ++ LF G  GK  +     + ++       L 
Sbjct: 265 RFTILSEKCLAHLRQYYR------KWKPEIYLFEGQPGKQYSGASVLKVVKNASSKAKLN 318

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            + + H LRHSFATHLL +G DLR IQ +LGH    TT+IYT+V +
Sbjct: 319 KNISPHILRHSFATHLLESGVDLRKIQVLLGHGSTKTTEIYTHVAT 364


>gi|56476505|ref|YP_158094.1| integrase/recombinase [Aromatoleum aromaticum EbN1]
 gi|58616507|ref|YP_195636.1| integrase [Azoarcus sp. EbN1]
 gi|56312548|emb|CAI07193.1| integrase/recombinase [Aromatoleum aromaticum EbN1]
 gi|56315969|emb|CAI10612.1| probable integrase [Aromatoleum aromaticum EbN1]
          Length = 309

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 81/298 (27%), Positives = 135/298 (45%), Gaps = 33/298 (11%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           I SF +   RQ  L+++ + R L+  T  +Y      +  +            +  +L  
Sbjct: 13  IRSFAMTPLRQRMLEDMGV-RNLAPNTQSAYLKQVSAYARYFDC---------SPDELGP 62

Query: 69  TEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
            ++RA+     +T+K+   ++  +   ++   K   KR       +  +   K+S  LP 
Sbjct: 63  EQVRAYQVYLTQTRKLTPSTVSVATGALRFLYKVTLKRAWA----VEEIPMPKRSFKLPV 118

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L+ ++    + +V              +  IL   Y  GLR+SEA  L   +I   +  
Sbjct: 119 VLSREEVSQFLASVD----------HLMHRTILMTAYAAGLRVSEATHLKVSDIDSQRMV 168

Query: 188 LRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQR 245
           LR+ QGKG K R V L P + +A+  Y+       +    L LF G + G+P+       
Sbjct: 169 LRVDQGKGRKDRYVMLSPRLLEALRVYW------KSARPTLWLFPGDVPGQPITRNAVGL 222

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             ++ RR  G+    T H+LRH+FATHLL +G D+R+IQ +LGH  L+TT  Y  V +
Sbjct: 223 ACQKARRACGIRKPITPHSLRHAFATHLLESGTDVRTIQLLLGHRSLATTSRYLKVAT 280


>gi|310764975|gb|ADP09925.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 359

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 87/324 (26%), Positives = 141/324 (43%), Gaps = 25/324 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +  ++WL +L    G S  T+Q Y    R FL +      E   I+   Q+S   + +
Sbjct: 21  LRQLAESWLSHLAAA-GRSPRTVQGYGERVRAFLAWC-----EPRGIRYAPQVSLVVLES 74

Query: 74  FISKRRTQKIGD------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP- 126
           +    ++ +  D         +  LS ++  L++L KR     +    +   K+   LP 
Sbjct: 75  YQRWLQSYRRADGRHLVVNGQRHLLSALRGLLRWLLKRHHILYNPADLLELPKEERRLPA 134

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           +  +E +   ++ ++   T         RN AIL LL+  G+R SE   L   ++   + 
Sbjct: 135 QVFSESETRRVLQSLDAGTP-----PGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRG 189

Query: 187 TLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQ 244
            + ++ GKG K R+VP+  +    +  Y       L        LF   +G  L  G   
Sbjct: 190 VVNVRRGKGGKDRVVPVGYAALMWLGRYLQDVRPRLAQRFDSGHLFISHKGTGLAHGTLT 249

Query: 245 RYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
               R +R    L  +   H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V  
Sbjct: 250 AMAGRAIRDGAHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAI 309

Query: 304 KNGGDWMMEIYDQTHPSITQKDKK 327
            +    +  ++ QTHP+  ++  K
Sbjct: 310 GH----LQSVHAQTHPAEKRRTAK 329


>gi|296162695|ref|ZP_06845481.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295887083|gb|EFG66915.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 339

 Score =  189 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 77/309 (24%), Positives = 139/309 (44%), Gaps = 21/309 (6%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           +  + PE V   L+   + +L  L +  G ++ T++S      +F+ + A     + ++ 
Sbjct: 20  DAAHTPEHVESALMVFVKGYLDWLAVT-GRTEQTVRSRFVALERFVRWCA-----ERSLS 73

Query: 62  TIRQLSYTEIRAFISKRR------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
             ++L+ + + A+            + +  R+ +  L+ ++ + ++L + +    +    
Sbjct: 74  RPQELTRSVLEAYQRYLYLYRKQDGKPLTIRTQQTMLTPLRGWCRWLSRERHVQYNAAAE 133

Query: 116 MRNLKKSNSLPRA-LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           +   +    LP+  L+  Q   L+D              AR+ AIL +LY  G+R  E +
Sbjct: 134 LVLPRAPKLLPKVVLSVVQVERLMDQ-----PDVGGLTGARDRAILEVLYSTGMRRMELI 188

Query: 175 SLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRG 232
            LT  +I     T+ I+ GKG + R +PL       +  Y D     L +      LF  
Sbjct: 189 GLTVSDIDLSGGTVMIRQGKGRRDRYIPLGERACYWVEWYCDQIRPSLAVRADEWTLFLT 248

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
             G+P   G     +++     G+      H LRH+ ATH+L NG D+R IQ++LGH  L
Sbjct: 249 DYGEPFGKGRLSDLVKRYMEMAGI-REGACHVLRHACATHMLENGADIRFIQALLGHADL 307

Query: 293 STTQIYTNV 301
           S+TQIYT V
Sbjct: 308 SSTQIYTQV 316


>gi|241992601|gb|ACS73655.1| IntI1 [uncultured bacterium]
          Length = 315

 Score =  189 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 77/334 (23%), Positives = 139/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
           + T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 RGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVPTTMIYTHV 315


>gi|172057600|ref|YP_001814060.1| integrase family protein [Exiguobacterium sibiricum 255-15]
 gi|171990121|gb|ACB61043.1| integrase family protein [Exiguobacterium sibiricum 255-15]
          Length = 347

 Score =  189 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 78/316 (24%), Positives = 150/316 (47%), Gaps = 23/316 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-----LSYTEIR 72
            ++++ +L   +  SK T++ Y  D   F  F+A  + E I  + I Q     +  + I 
Sbjct: 34  IRSYIDHLAS-KNFSKATMRRYVYDFDSFFQFVAEASGESIQARDITQEAFLEIDGSGIA 92

Query: 73  AFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           A+      T++     + R LS ++S  ++L    + +E+ +  +   K++   P  L +
Sbjct: 93  AYAEYLALTKQNAPSVINRKLSALQSLFRHLIDIGVLSENPVAKINRPKQAKRDPVYLTK 152

Query: 132 KQALTLVD------NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           ++   L+        +    +   +    R+  +  LL   G+R+SE   LT   +   +
Sbjct: 153 REWDELMQLLPSNVEMNAREATHYERDRVRDITLFQLLGYSGMRLSEMTQLTWNAVDFHE 212

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            T+R+ GKG+K R++PL   VR A+ ++     + L +    P+F+  +GK L+P   Q 
Sbjct: 213 GTIRVIGKGNKERVIPLAKPVRVALRKF--AAHYSLTMRGPEPIFQ-KQGKALSPRAVQH 269

Query: 246 YIRQLRRYLGL------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            +++    L            T H LRH+FAT L + G D+ +IQ +LGH  ++TTQ+Y 
Sbjct: 270 ILKRHVDRLRPVLPFLERKQITPHKLRHTFATRLATGGVDVLTIQQLLGHESVATTQVYA 329

Query: 300 NVNSKNGGDWMMEIYD 315
           ++  +     + E++D
Sbjct: 330 HIGDREKKRAI-ELFD 344


>gi|241992519|gb|ACS73597.1| IntI1 [uncultured bacterium]
          Length = 315

 Score =  189 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 77/334 (23%), Positives = 138/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVNWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLY  G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYRTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|241992614|gb|ACS73664.1| IntI1 [uncultured bacterium]
          Length = 315

 Score =  189 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 139/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHRVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|182417143|ref|ZP_02948516.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum 5521]
 gi|237667184|ref|ZP_04527168.1| phage integrase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378985|gb|EDT76491.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum 5521]
 gi|237655532|gb|EEP53088.1| phage integrase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 332

 Score =  189 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 65/300 (21%), Positives = 128/300 (42%), Gaps = 33/300 (11%)

Query: 22  LQNLEIER--GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           L  L++++    SK TL +Y    R F  F+          + +  ++  +IR F++   
Sbjct: 59  LLYLQVKKLENYSKATLSNYMYTLRNFSTFIN---------KPVSTITKNDIRYFMA-IN 108

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +   ++   L+ +K+F +++++ +I  ++   ++   +    L ++L  ++   +  
Sbjct: 109 YTNLKPSTVNNKLASLKAFFEWMEQEEIIPKNPARHLSGTRLPKRLRKSLTIEELEKI-- 166

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                        D R   ++  L+  G RISE +     ++    ++LR+ GKGDK RI
Sbjct: 167 --------RLVCKDVRERVLIEFLFATGCRISEVVKANISDLDLSNNSLRVIGKGDKQRI 218

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGLP 257
           V      +  +  Y      D   + +  LF   +     ++    +  + ++     + 
Sbjct: 219 VFFSDKTKLHLKNYI-----DTRKDNEDALFISSKFPYNRISKRGLELIVSKIGERSNIG 273

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRH+ AT  L +G D+ +IQ +LGH   STTQIY     +N  D +   Y Q 
Sbjct: 274 KPVFPHLLRHTMATLGLQSGADITTIQHLLGHTTPSTTQIYA----ENSLDNLKHEYKQH 329


>gi|13488301|ref|NP_085852.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14028101|dbj|BAB54693.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 336

 Score =  189 bits (479), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 75/315 (23%), Positives = 125/315 (39%), Gaps = 20/315 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            SF +L +R  + ++L  +R +S  T+ +Y    R  L F   +  +      +  L   
Sbjct: 8   PSFAVLLQR-YFTEHLTNQRAVSPRTIAAYRDTFRLLLRFAERHIGKAPANVELLDLDSE 66

Query: 70  EIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKIT---TESNILNMRNLKKSNSL 125
            I AF+    R +  G RS    LS I+SFL Y     +T   T    L +   +    L
Sbjct: 67  LILAFLDHLERERDNGPRSRNVRLSAIRSFLHYASHHDVTALPTIQRALAIPQKRYDKPL 126

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
              L+ ++   ++D       ++ +W   R+ A    +Y  G R+SE + L   +++ D 
Sbjct: 127 LEFLSREEMQAILD-----APNQLEWTGRRDQAFFTTMYNTGGRVSELIGLRVSDVVLDG 181

Query: 186 S-TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           S  + I GKG K R VPL  S    +  +        ++      F    G  +      
Sbjct: 182 SACIHINGKGRKQRTVPLWRSSANLLRAW---RREAGDVAGSAAFFPNRDGVAMTRSNVT 238

Query: 245 RYIRQLRRYLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           + +    +         L  + + HT RHS A HLL +G D+  I   LGH   +TT  Y
Sbjct: 239 QRLALYVKKAAEKKPQLLAKTISPHTFRHSTAMHLLQSGVDISVIALWLGHESPTTTHNY 298

Query: 299 TNVNSKNGGDWMMEI 313
              +       +  +
Sbjct: 299 LQADLSMKERALARL 313


>gi|302387141|ref|YP_003822963.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302197769|gb|ADL05340.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 339

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 76/322 (23%), Positives = 131/322 (40%), Gaps = 16/322 (4%)

Query: 9   IVSFELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           +   +  K    +L   L   + +SK T+ SY    R  L +        I   +++ + 
Sbjct: 1   MKPTDFSKLLTEYLTSYLPSLKNVSKNTISSYCDTFRLLLKYCRDVHNLSIEKISMKDID 60

Query: 68  YTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKR---KITTESNILNMRNLKKSN 123
              +  F+     ++  G  +  + L  I+SF +Y++      +     +LN+   KKS 
Sbjct: 61  ADLVSQFMLWLEEERHCGISTRNQRLMAIRSFFRYVQGEQPQNLLNCQKVLNIPPKKKSL 120

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            +   L  ++   L+        + +     R+ A+L +LY  G R+ E   LT +NI  
Sbjct: 121 PVVTYLTVEEMKLLL-----AQPNTSTPEGRRDLALLCILYDTGGRVQEIADLTVRNIRL 175

Query: 184 DQ-STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           +  + + + GKG K R VPLLP   + +  Y              PLF       L    
Sbjct: 176 ENPAKVHLTGKGRKSREVPLLPRTVQLLERYMIEHRLLAPEKQDHPLFCNRHNSKLTRSG 235

Query: 243 FQRYIRQLRRYLG-----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
               + +            P S + H LRH+ A HLL  G ++  I+ ILGH  + TTQI
Sbjct: 236 ISYILNKYAELASSQSLTFPESISPHVLRHTKAMHLLQAGVNIIYIRDILGHASVDTTQI 295

Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319
           Y + N++     + ++ D   P
Sbjct: 296 YASANTQMKRAALEKLGDSPAP 317


>gi|319412013|emb|CBY91946.1| hypothetical protein [Streptococcus pneumoniae]
          Length = 298

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 85/296 (28%), Positives = 129/296 (43%), Gaps = 26/296 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L   +  + LS  T+++Y+ D  QF                    +Y  + ++I +   
Sbjct: 9   YLDYCKTHKRLSSHTIRAYKNDLMQFYNS-----------------NYDNVESYIEELTQ 51

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALT--- 136
             I   +L+R ++ IK F  YLK + I  ES    +R   +    LP+ +          
Sbjct: 52  SNIKTNTLRRKIACIKVFYNYLKYQHIIEESPFNQLRFQFRTEKILPKTIPYDILKNIFS 111

Query: 137 -LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L   V++  +   K    RN  I+ LL   G+RISE   +  ++I     TL I GKG 
Sbjct: 112 YLEQRVVISKTDYQKQKAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLHIIGKGK 171

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYL 254
           K RI+ L       +LE Y              LF G    KPL+    +  ++++    
Sbjct: 172 KERILFLGDQTTFNLLETYINKN---GKESNDFLFPGKYSPKPLSEQSVRLILKKIVEQN 228

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            L  + T H  RHSFAT LL N  D+R IQ ILGH  +S TQIYT+V+     + +
Sbjct: 229 SLSKTITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISITQIYTHVSHSKQKEIL 284


>gi|253988421|ref|YP_003039777.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253988443|ref|YP_003039799.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253990479|ref|YP_003041835.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211638830|emb|CAR67446.1| probable integrase/recombinase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638952|emb|CAR67567.1| probable integrase/recombinase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779871|emb|CAQ83032.1| putative phage integrase/recombinase [Photorhabdus asymbiotica]
 gi|253779893|emb|CAQ83054.1| Phage integrase [Photorhabdus asymbiotica]
 gi|253781929|emb|CAQ85093.1| phage integrase [Photorhabdus asymbiotica]
          Length = 340

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 81/337 (24%), Positives = 149/337 (44%), Gaps = 27/337 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ME    P      L ++ + +L+ ++   G S  T ++Y      F+ +      E   +
Sbjct: 1   METQ--PTFTLATLRQQLEAYLE-IQTASGHSTRTPETYREWLTPFVDWC-----EMRAV 52

Query: 61  QTIRQLSYTEIRAFISKRRT------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
               Q+S   + ++    R       Q  G+ S  + L  ++ + ++L +R     +   
Sbjct: 53  YHAPQVSLPLLESWQRYLRRYRKADGQHYGNNSQLQRLRCLRGWFRWLLQRHHILYNPAD 112

Query: 115 NMRNLKKSNSLP-RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
            +   K+   LP + L++ +   +++++   T      +  RN A+L  L+  G+R +E 
Sbjct: 113 MLILPKEEQRLPAQVLSDVETEQVLNSLDTQTP-----LGLRNRAVLEALWSTGIRRTEL 167

Query: 174 LSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFR 231
           ++L   +I   +  + ++ GK    R+VP+       +  Y       L        +F 
Sbjct: 168 INLRLGDIDRHRGVVVVRQGKNGHDRVVPIGERALAWLERYLADVRPQLAYRYDSGYVFI 227

Query: 232 GIRGKPLNPGVF-QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
            +RG PL+     Q     +R    L  + + H  RHS AT +L NG D R IQ+ILGH 
Sbjct: 228 TVRGNPLSRNTLTQMAGHTIREEAKLDKAGSCHVFRHSMATQMLENGADTRHIQAILGHK 287

Query: 291 RLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
           +L TTQIYT V   +    + E+++QTHP+  +  K+
Sbjct: 288 KLETTQIYTRVAIGH----LKEVHEQTHPAERKPKKQ 320


>gi|241992572|gb|ACS73635.1| IntI1 [uncultured bacterium]
          Length = 315

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 77/334 (23%), Positives = 138/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+            ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFI--------RSHGVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|18310790|ref|NP_562724.1| tyrosine recombinase XerD [Clostridium perfringens str. 13]
 gi|110799101|ref|YP_696492.1| tyrosine recombinase XerD [Clostridium perfringens ATCC 13124]
 gi|168206137|ref|ZP_02632142.1| tyrosine recombinase XerD [Clostridium perfringens E str. JGS1987]
 gi|168210828|ref|ZP_02636453.1| tyrosine recombinase XerD [Clostridium perfringens B str. ATCC
           3626]
 gi|168214383|ref|ZP_02640008.1| tyrosine recombinase XerD [Clostridium perfringens CPE str. F4969]
 gi|168215437|ref|ZP_02641062.1| tyrosine recombinase XerD [Clostridium perfringens NCTC 8239]
 gi|169343727|ref|ZP_02864726.1| tyrosine recombinase XerD [Clostridium perfringens C str. JGS1495]
 gi|182625652|ref|ZP_02953421.1| tyrosine recombinase XerD [Clostridium perfringens D str. JGS1721]
 gi|18145471|dbj|BAB81514.1| probable integrase/recombinase [Clostridium perfringens str. 13]
 gi|110673748|gb|ABG82735.1| tyrosine recombinase XerD [Clostridium perfringens ATCC 13124]
 gi|169298287|gb|EDS80377.1| tyrosine recombinase XerD [Clostridium perfringens C str. JGS1495]
 gi|170662459|gb|EDT15142.1| tyrosine recombinase XerD [Clostridium perfringens E str. JGS1987]
 gi|170711119|gb|EDT23301.1| tyrosine recombinase XerD [Clostridium perfringens B str. ATCC
           3626]
 gi|170714149|gb|EDT26331.1| tyrosine recombinase XerD [Clostridium perfringens CPE str. F4969]
 gi|177909054|gb|EDT71529.1| tyrosine recombinase XerD [Clostridium perfringens D str. JGS1721]
 gi|182382078|gb|EDT79557.1| tyrosine recombinase XerD [Clostridium perfringens NCTC 8239]
          Length = 290

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 62/310 (20%), Positives = 139/310 (44%), Gaps = 23/310 (7%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L+ + + +L+++    G  K T+ +Y  D   +L F+     +      + + SY  I 
Sbjct: 3   DLVSKYEVYLESI----GKRKNTVSAYITDVSMYLDFVEEKGFK------VSEDSYPLI- 51

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +++   +       S++R++  +++F  +L   +   +   L M+  +     P  L  +
Sbjct: 52  SYVQHLKESHKSPSSIQRTIISLRNFYNFLVAEEFLKKVPNLTMKKERVEKKKPLVLTVE 111

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   ++++  + T         R+ A+L L+Y  G+++SE +SL  ++I  D S +  + 
Sbjct: 112 EINKIMNSTNVLTEK-----GIRDKALLELMYATGMKVSELISLRIEDINLDSSFVNCRD 166

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
                R++P+  + ++++  Y  +   + N      LF  + G+P+      R +++   
Sbjct: 167 SRGYERLIPIGKAAKESLKRYIVVR--EDNSKGSDKLFLNMSGEPITRQGVWRIVKEYAV 224

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGDWMM 311
              +      +T RHSFA HLL NG + + +Q +LG    +    Y ++       + + 
Sbjct: 225 IANIGKDINLNTFRHSFAVHLLQNGANAKVVQELLG----NQVMTYIDMYYDIINNEKIN 280

Query: 312 EIYDQTHPSI 321
            IY + HP  
Sbjct: 281 NIYRKAHPRA 290


>gi|168335500|ref|ZP_02693581.1| integrase family protein [Epulopiscium sp. 'N.t. morphotype B']
          Length = 351

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 72/325 (22%), Positives = 136/325 (41%), Gaps = 28/325 (8%)

Query: 13  ELLKERQNWL-QNLE-IERGLSKLTLQSYECDTRQFLIF-------LAFYTEEKITIQTI 63
           ++L E  +++   +  IE   S  T   Y  D R FL F       +      +IT+  I
Sbjct: 18  DILDEMPDFVYDFMRGIEHTTSSSTRLGYLYDLRIFLDFVIKSNLIMGKINRIEITVLDI 77

Query: 64  RQLSYTEIRAFISKRRTQ------------KIGDRSLKRSLSGIKSFLKYLKKRKITTES 111
           ++LS   I  FI    +             K  +R   R LS +K+  KY  KR I   +
Sbjct: 78  QKLSPRNIEKFIVYLNSYEKIDIEGNKNIYKNSNRGKARKLSALKTMFKYFYKRGIINNN 137

Query: 112 NILNMRNLKKSNSLPRALNEKQALTLV------DNVLLHTSHETKWIDARNSAILYLLYG 165
            +  +   K+       L+  +   L+      + +             R+ AI+ LL G
Sbjct: 138 PVGVIEMPKRYEKTIIKLDADEIEDLIFVVESGEQLSPAQKRYHTKTKIRDVAIICLLLG 197

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
            G+R+SE + L   ++    + ++I  KG    I+     V + +  YY++     + ++
Sbjct: 198 TGIRVSECVGLNINDVDFKYNGIKITRKGGNESIIYFSKEVEQGLKNYYEIRKEKSSKDL 257

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
             PLF  ++ + ++  + +  +++    +    + T H LR ++ T L    GD+  +  
Sbjct: 258 DEPLFLSLQNRRISTRMVEVLVKKYAGLITKLKTITPHRLRTTYGTRLYEETGDIYLVAD 317

Query: 286 ILGHFRLSTTQI-YTNVNSKNGGDW 309
           ILGH  ++TT+  Y N++ K   + 
Sbjct: 318 ILGHKDVNTTKKYYVNMDDKKRKNA 342


>gi|237795760|ref|YP_002863312.1| phage integrase [Clostridium botulinum Ba4 str. 657]
 gi|229261691|gb|ACQ52724.1| phage integrase [Clostridium botulinum Ba4 str. 657]
          Length = 330

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 72/311 (23%), Positives = 138/311 (44%), Gaps = 27/311 (8%)

Query: 6   LPE---IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
           LPE   +V+ ++ ++ Q +L + +++ GLS  TL++Y+ +   F   L          + 
Sbjct: 43  LPEETGLVTSDIEEKLQIYLASKKLD-GLSLKTLKNYQYNLAIFADHLR---------KP 92

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +  ++  ++R F++  R + +   S+   +S +KSF  +L   +   ++    ++  K+ 
Sbjct: 93  LGTITTMDLRMFLA-VRCKNMKATSVNGQISILKSFFGWLHDEEYIPKNPAKKLKQTKEP 151

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             L  A+ E++   L                    A++  L   G R+SE + +   ++ 
Sbjct: 152 KRLRHAMTEEEVELLRQASKTDRE----------KALVEFLISTGCRLSEVVGVNKDDLN 201

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
             + +L + GKG+K R V      +  + +Y      D   N  L +        L    
Sbjct: 202 WHEMSLNVIGKGNKERKVYFSTKAKILLKKYLLTRKDD---NEALFVTSKRPHGRLGGRS 258

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            QR I+++    GL  S   H  RHSFAT  +++G  L  +Q I+GH   STTQ+Y  ++
Sbjct: 259 VQREIKKIANRAGLNKSVYPHLFRHSFATCKINSGMPLPVLQHIMGHESPSTTQVYAQLS 318

Query: 303 SKNGGDWMMEI 313
            +N      +I
Sbjct: 319 EENIKYEYKKI 329


>gi|259909796|ref|YP_002650152.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224965418|emb|CAX56950.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 351

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 83/324 (25%), Positives = 142/324 (43%), Gaps = 25/324 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +  ++WL +L +  G S  T+Q Y    R FL +      E   I    Q+S   + A
Sbjct: 21  LRQLAESWLAHLVVA-GRSPRTVQGYRERVRAFLAWC-----EPRGITYAPQVSLAVLEA 74

Query: 74  FISKRRTQKIGD------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP- 126
           +    +  +  D       S    L+ I+   ++L +R +   +    +   K+   LP 
Sbjct: 75  YQRWLQGYRRADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPA 134

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           +  +E +   ++ ++   T         RN AIL LL+  G+R +E  +L   ++   + 
Sbjct: 135 QVFSEAETRRVLQSLDAGTP-----PGLRNRAILELLWSTGIRRTELANLLLSDVDAVRG 189

Query: 187 TLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQ 244
            + ++ GKG + R+VP+  +    +  Y       L        LF   +G  L  G   
Sbjct: 190 VVNVRRGKGGRDRVVPVGNAALMWLARYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLT 249

Query: 245 RYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
               R +R    L  +   H  RH+ AT +L NG D R IQ+ILGH +L TTQIYT V  
Sbjct: 250 AMAGRAIRSGAHLKKAGACHIFRHTMATQMLENGADTRHIQAILGHEKLETTQIYTRVAI 309

Query: 304 KNGGDWMMEIYDQTHPSITQKDKK 327
            +    + +++  THP+  ++ +K
Sbjct: 310 GH----LQKVHAHTHPAEKRRTEK 329


>gi|7263003|gb|AAF44051.1|AF206717_5 ResU [Shuttle vector pI3]
          Length = 321

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 78/299 (26%), Positives = 135/299 (45%), Gaps = 16/299 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFI 75
           + + W   L  E+G S  T++ Y  D R    +L A    + +  +   +LS  ++RAF+
Sbjct: 6   QIEIWAHYLAKEQGRSPATVREYLKDVRLLRSWLDAEDKPQHLRGRDWGELSAADLRAFL 65

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT--ESNILNMRNLKKSNSLPRALNEKQ 133
           +         R   R ++  +SF ++L + +     +    ++   K     P  L  + 
Sbjct: 66  A---AADPSPRRFHRLVNSWRSFWRFLVRVQKLPGVQDITADLTTPKIPKRAPVKLTLED 122

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRI 190
              L++ V      ++     +N  I+  LYG GLRISE L++   +I     +   +R+
Sbjct: 123 VSKLLEVVYR---DKSPQRGLKNWCIVAFLYGTGLRISEMLAMKFADIEYQDGSPVAVRV 179

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIRGKPLNPGVFQRYI 247
            GKGDK R VPL P+ + A++ +        N     +  PL     G+ +      + +
Sbjct: 180 IGKGDKERRVPLSPTAQGALMRWLRERKTHGNPVTPWVWSPLSGKRYGQQMQARTIGKML 239

Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
                  GL P + + H LRH+FAT LL+NG  L  I+ +LGH  + TT IY   +++ 
Sbjct: 240 DTAAERAGLDPATVSPHKLRHTFATTLLNNGRTLDEIKELLGHENIQTTMIYAQTDTRR 298


>gi|38637723|ref|NP_942697.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527061|gb|AAP85811.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 336

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 67/309 (21%), Positives = 131/309 (42%), Gaps = 16/309 (5%)

Query: 20  NWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++L  +L  +R LS  T+++Y       L +        +   ++ Q+    + AF+   
Sbjct: 12  SFLTHHLAAQRNLSPNTIKAYRDVFTLLLRYCRDVRGIALERLSLAQIDVGLVEAFLDHL 71

Query: 79  -RTQKIGDRSLKRSLSGIKSFLKY---LKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
              + +   +    L+ + +F +Y       ++     +L +   ++  +    L ++  
Sbjct: 72  ANDRHVSVSTQNHRLAALHAFFRYVQSEVPERLLQCQQVLAIPLRRQPRASVGYLPKEYL 131

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQGK 193
             L+    L TS        R++ +L +LY  G R+ E + L   ++  D  + +R+ GK
Sbjct: 132 AQLLAQPDLRTSE-----GCRDAVMLSVLYDTGARVQELIDLNAGDVRLDPPAQVRLMGK 186

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL--- 250
           G K R VPL+ S  + +L+Y      D       PLF+  +G  L+    +  +++    
Sbjct: 187 GRKPRAVPLMDSTVELLLQYRRDNHLDRPEYADKPLFQNRQGTRLSRSGVRYLLQKYVIP 246

Query: 251 --RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
             R +       + H+LRH+   HLL +G  L  I+  LGH  + TT+IY   N +    
Sbjct: 247 VRRSHPDFTQRVSPHSLRHTKGMHLLQSGVPLEIIRDFLGHVDVKTTEIYARANLEMKRK 306

Query: 309 WMMEIYDQT 317
            + +  D  
Sbjct: 307 ALEKATDGA 315


>gi|241992534|gb|ACS73608.1| IntI1 [uncultured bacterium]
          Length = 315

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 138/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGVRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R        FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHTYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315


>gi|317063575|ref|ZP_07928060.1| integrase/recombinase [Fusobacterium ulcerans ATCC 49185]
 gi|313689251|gb|EFS26086.1| integrase/recombinase [Fusobacterium ulcerans ATCC 49185]
          Length = 298

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 74/300 (24%), Positives = 127/300 (42%), Gaps = 11/300 (3%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L K  +++L   E     S  T++S + D  Q   +L    +    I+   +++   +R 
Sbjct: 8   LDKNIKDFLYYAEFGENKSLNTIKSLKKDLSQLSEYLKNIEK----IEEASKITPVMLRG 63

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           FI   +  ++G RS+ R LS ++SF KYL K  +   + I  + +       P  L  ++
Sbjct: 64  FIIALQKNEVGKRSINRKLSSLRSFFKYLMKNNLIKNNPIEIINSPSFEAEKPDILTLEE 123

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L D +     +       R+  IL LLY  G+  +E LS+  Q    D  TL +   
Sbjct: 124 INKLRDVI-----NTDNANGLRDRLILELLYSSGITSTEMLSIGEQVFDLDSRTLLV-SN 177

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G   R V      R+    Y +              LF    G  L+    +R + +   
Sbjct: 178 GKANRYVFFSQRTREYFKRYVEAKKEKYGDKYNSSILFVNGSGSRLSDRSLRRIVDRYAA 237

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    + ++ RH+FA HLL+ G  L  +Q ++GH  + +T+IY  +  K   D+M +
Sbjct: 238 RAGITREISPYSFRHTFAVHLLTKGMSLNFLQELMGHVTIESTKIYQEILYKIPFDFMNQ 297


>gi|291544906|emb|CBL18015.1| Site-specific recombinase XerD [Ruminococcus sp. 18P13]
          Length = 331

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 79/336 (23%), Positives = 148/336 (44%), Gaps = 30/336 (8%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE--------- 56
           + +  S +  +   ++L  L I +G S  T+  Y  D R FL ++ F   E         
Sbjct: 1   MQQAKSPDNPEILNDYLIFLSIVKGRSPRTVAEYNLDLRLFLKYIKFMKTEHNQPAVEDM 60

Query: 57  ---KITIQTIRQLSYTEIRAFISKRRTQKIG-DRSLKRSLSGIKSFLKYLKKR-KITTES 111
               + I  +RQ++  +I  F    +  +   DR+  R  S +K F  YL     +  ++
Sbjct: 61  DIRDVDITLLRQVTLQDIYQFEYYLQDDRQNRDRARSRKTSAVKGFFSYLTYNMTLLEKN 120

Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
              ++      +SLP+ L+ +++L ++ +V              +  IL L   CG+R+S
Sbjct: 121 PAEHLELPGVKHSLPKFLSLEESLRMLSSVESDHPQR-------DYCILVLFLNCGIRLS 173

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           E + +  Q++   +  LRI GKG+K R++ L  +   AI EY               LF 
Sbjct: 174 ELVGINVQDVDMYERRLRILGKGNKERMIYLNDACLSAITEYLQTRKNP--PTEPNALFL 231

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNG-GDLRSIQSILGH 289
               + ++    Q+ +  + +   L     + H LRH+ AT +  +G  D  +++ ILGH
Sbjct: 232 SRNNRRISRRRVQQIVESVLKNADLGGKGLSTHKLRHTAATLMYQHGNVDTLTLKEILGH 291

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
             + TT+IYT+++ +   D +     + +P    K+
Sbjct: 292 KSIVTTEIYTHLSDEQRQDAI-----EHNPLANVKN 322


>gi|158312284|ref|YP_001504792.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158107689|gb|ABW09886.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 329

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 75/313 (23%), Positives = 116/313 (37%), Gaps = 21/313 (6%)

Query: 13  ELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           +L    Q +    L  ++  S  T+ +Y    R  L F    T +  +  ++  L+ T I
Sbjct: 3   DLAPVLQGFFTDRLARQKKASPNTVAAYRDTCRLLLAFAQSKTGKPPSSLSLADLNATLI 62

Query: 72  RAFISKRRTQ-KIGDRSLKRSLSGIKSFLKY---LKKRKITTESNILNMRNLKKSNSLPR 127
             F+     Q   G  +    L+ I S   Y            S +L +   ++  ++  
Sbjct: 63  GEFLHHLEEQRGNGTATRNARLAAIHSLFTYAAPRAPEHAAVISQVLAIPPRRRERAIVS 122

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS- 186
            L  ++   LV          + W   R+ ++L L    GLR+SE   L  Q+I      
Sbjct: 123 YLTAEEIDALV-----AAPDRSTWHGRRDRSLLLLDVQTGLRVSELTGLNRQDIHLGAGP 177

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            +R  GKG K R  PL     K I  +      +L+ +   PLF    G  L+    +R 
Sbjct: 178 HVRCHGKGRKDRATPLTTQTVKVIRTWL----AELSPDPTGPLFPTQPGGRLSRDAVERL 233

Query: 247 IRQLRRYLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           + +                 T HTLRHS A  LL  G D   I   LGH    TTQIY +
Sbjct: 234 VAKHTATAADTCPSIKEKHVTPHTLRHSAAMTLLKAGVDTSVIALWLGHEGTETTQIYLH 293

Query: 301 VNSKNGGDWMMEI 313
            +       +  +
Sbjct: 294 ADMTIKEQALARV 306


>gi|332884383|gb|EGK04647.1| hypothetical protein HMPREF9456_03400 [Dysgonomonas mossii DSM
           22836]
          Length = 338

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 75/319 (23%), Positives = 142/319 (44%), Gaps = 16/319 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   L  +RG S  T+ +Y     QF+ F+    +  I   T+ QL+Y+ +R F+     
Sbjct: 13  FWDYLPNDRGASLRTISTYRYAFIQFIEFMETARDTNIGEITLAQLNYSNVRDFLRWLEN 72

Query: 81  QK-IGDRSLKRSLSGIKSF---LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            + +   +  + L+ +KSF   +KY     +T    I+ +++     +    L+ +    
Sbjct: 73  NRHVSVSTTNQRLAALKSFATFVKYEFPEYLTASEEIVKIKSKVNEQTTISYLSPEGMRC 132

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQGKGD 195
           L+D     T   T     R+  I+ LL+  G+R+SE +++  ++  M     + I GKG+
Sbjct: 133 LLD-----TIDITMQSGLRDYTIILLLFLTGIRVSELIAIKGRDVCMSSPRHIVIHGKGN 187

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R VP++  +   +++Y  L  F L  N+  PLFR   G           + +  +   
Sbjct: 188 KNRHVPMVKELHAQLMKYAKLFDFTLVRNLDKPLFRNHSGDEFTRQGINYTLLKYAQQAK 247

Query: 256 ------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                 +P   + H +RHS A  L+  G +L  I+ +LGH  +  T+IY  ++S    + 
Sbjct: 248 RKNPELIPEHLSPHKIRHSTAMSLVEQGTELIIIRDLLGHRSIQATEIYAKLSSNRKREA 307

Query: 310 MMEIYDQTHPSITQKDKKN 328
           + +      P    + ++N
Sbjct: 308 IEKASSHIVPEERPEWEEN 326


>gi|226949603|ref|YP_002804694.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
 gi|226843121|gb|ACO85787.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
          Length = 331

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 71/313 (22%), Positives = 134/313 (42%), Gaps = 27/313 (8%)

Query: 4   NNLPE---IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           N LPE   +V+ ++ ++ Q +L + +++ GLS  TL++Y  +   F  +L          
Sbjct: 42  NILPEETGLVTSDIEEKLQIYLASKKLD-GLSIETLKNYRYNLIIFADYLR--------- 91

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           + +  +   ++R F+   R + +   S+   +S +KSF  +L   +   ++    ++  K
Sbjct: 92  KPLAAIETMDLRMFLGA-RCKDMKQSSVNGQISILKSFFGWLADEEYIPKNPAKKLKQTK 150

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +   + + L E++A  L                    A+   L   G R+ E   +   +
Sbjct: 151 QPKRVRKPLTEEEAELLRQACETDRQ----------KALTEFLISTGCRLDEVFKVNKDD 200

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I   + +L I GKGDK R V      +  + +Y      D   N  L +        L  
Sbjct: 201 INWHEMSLFIVGKGDKERKVYFNTKAKILLKKYLFSREDD---NPALFVTSKRPYHRLGK 257

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              QR  +++    G+  S   H  RHSFAT+ +++G  +  IQ ++GH   +TTQIY  
Sbjct: 258 RSIQREFKKIANIAGIEKSIHPHLFRHSFATYKINSGMPMPIIQHLMGHESPATTQIYAQ 317

Query: 301 VNSKNGGDWMMEI 313
           ++ +       +I
Sbjct: 318 LSEETVKYEYKKI 330


>gi|332875882|ref|ZP_08443671.1| integron integrase [Acinetobacter baumannii 6014059]
 gi|332735920|gb|EGJ66958.1| integron integrase [Acinetobacter baumannii 6014059]
          Length = 318

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 76/325 (23%), Positives = 133/325 (40%), Gaps = 67/325 (20%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ++ER  +L         S  T Q+Y    R F+ F          ++    L  +E+ AF
Sbjct: 1   MRERIRYLHY-------SLRTEQAYVNWVRAFIRFH--------GVRHPATLGSSEVEAF 45

Query: 75  ISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +S     +K+   + +++L+ +  F   +    +     +  +   + S  LP  L   +
Sbjct: 46  LSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRRLPVVLTPDE 102

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-G 192
            + ++            +++  +     LLYG G+RISE L L  +++  D  T+ ++ G
Sbjct: 103 VVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREG 151

Query: 193 KGDKIRIVPLLPSVRKAILE------------------------------------YYDL 216
           KG K R + L  S+  ++ E                                    +   
Sbjct: 152 KGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWF 211

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
             F  + +   P    +R   +    FQR  ++     G+    T HTLRHSFAT LL +
Sbjct: 212 WVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRS 271

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNV 301
           G D+R++Q +LGH  +STT IYT+V
Sbjct: 272 GYDIRTVQDLLGHSDVSTTMIYTHV 296


>gi|319957731|ref|YP_004168994.1| tyrosine recombinase xerd subunit [Nitratifractor salsuginis DSM
           16511]
 gi|319420135|gb|ADV47245.1| tyrosine recombinase XerD subunit [Nitratifractor salsuginis DSM
           16511]
          Length = 276

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 82/302 (27%), Positives = 142/302 (47%), Gaps = 38/302 (12%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + + L+I +GLS  ++ SY  D RQ                 + +L    I AF+S+
Sbjct: 9   LEAFAEYLQIVKGLSPKSIDSYLTDLRQLAEEQG----------DLLKLETESILAFLSR 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +    R+L R L+ I +F+ +  + K+ T    + +   +   +LP+ L+ ++    
Sbjct: 59  FDNK----RTLNRKLASINAFVNFCHREKLGTSR--VKIPMARVPKTLPKYLSHEEIEAG 112

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +  +       +  I  R+ A++  LY  G RISEAL++   +++D    +R   KG + 
Sbjct: 113 LRYI-----DRSTPIGRRDYALILFLYASGCRISEALAVQRGDLVDGWLKIR-YAKGARE 166

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+VPL P+  KA+ E+               L+   RG+PL+     + +R+        
Sbjct: 167 RMVPLAPAALKALEEHLKESDI-----ASPYLWLNYRGEPLSRVSAYKIVRKYL------ 215

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              + H LRHSFAT L+  G DLR +Q +LGH  L TTQIYT++  ++    +    +  
Sbjct: 216 -GVSPHVLRHSFATALILGGADLRVVQELLGHSSLITTQIYTHIERQH----LRRTVETY 270

Query: 318 HP 319
           HP
Sbjct: 271 HP 272


>gi|152992017|ref|YP_001357738.1| site-specific DNA tyrosine recombinase XerD [Sulfurovum sp.
           NBC37-1]
 gi|151423878|dbj|BAF71381.1| site-specific DNA tyrosine recombinase XerD [Sulfurovum sp.
           NBC37-1]
          Length = 271

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 82/301 (27%), Positives = 139/301 (46%), Gaps = 39/301 (12%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            + + + + + L  LT+ SY  D RQ          E+   + + +L  T++  F+S   
Sbjct: 7   AFEEYISVTKALDALTISSYLGDLRQL---------EEAVQKPLTKLDTTDVLKFLSTFE 57

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +    R+L R LS I +F  +   +  T E   + +   K   +LP+ L+ ++ +  + 
Sbjct: 58  NK----RTLNRKLSSINTFFHFCHLQNFTHEK--IRIPMAKVPKNLPKYLSPEEIMEGI- 110

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR 198
                    +  I  R+ A++  LY  G RISEAL+    +I+  +  L+I+  KG+K R
Sbjct: 111 ----SLIDRSSTIGLRDYALILFLYASGCRISEALNAQRSDIL--EGWLKIRFAKGEKER 164

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VPL P   +A+  Y               L+   R + L+     + +++         
Sbjct: 165 VVPLAPIAIEAVEAYLQAQDM-----SSSYLWLNYRAEQLSRISAYKIVKKYL------- 212

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H LRHSFA+ L+  G DLR +Q +LGH  L TTQIYT++  +N  D M+      H
Sbjct: 213 GVSPHVLRHSFASSLIIGGADLRVVQELLGHSSLETTQIYTHIQKQNLQDTMI----HYH 268

Query: 319 P 319
           P
Sbjct: 269 P 269


>gi|224540989|ref|ZP_03681528.1| hypothetical protein CATMIT_00140 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526088|gb|EEF95193.1| hypothetical protein CATMIT_00140 [Catenibacterium mitsuokai DSM
           15897]
          Length = 335

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 73/318 (22%), Positives = 140/318 (44%), Gaps = 16/318 (5%)

Query: 9   IVSFELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           + + +       +L + L + R  SK T+ SY+   + F++FL  +    I    + Q++
Sbjct: 1   MTATDFAVLVTKFLTEYLPLHRNCSKNTISSYKDSLKLFILFLRDHKSMNINKFKMHQIN 60

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK---RKITTESNILNMRNLKKSNS 124
              I  FI     +     ++   L+GIKSF+ + +      +     +L++++LK +  
Sbjct: 61  RELILEFIEWLENRGNSPVTINHRLAGIKSFINFAQYESVENLAYLQTVLSVKSLKTTTR 120

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
               L E+Q      N L++          R+  I+ LLY  G R+ E   L  ++I   
Sbjct: 121 QVDYLTEEQM-----NNLINLPPTDTSTGIRHRIIMCLLYDTGARVQELCDLKIEDINLG 175

Query: 185 QS-TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
            + T+++ GKG KIRIVP+  ++ + +  Y      D+ L  +  L +    + ++    
Sbjct: 176 NNPTVKLHGKGSKIRIVPISKNMNQILEVYISKFFSDIKLKNE-YLIKNKNNQQMSRDGI 234

Query: 244 QRYIRQLRRYL-----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +  +++    L       P     H  RHS A H+L+    +  I+  LGH  +STT IY
Sbjct: 235 EYIVQKYATILKNNDPSFPSKVHPHMFRHSKAMHMLAVDIPIVYIRDFLGHEDISTTMIY 294

Query: 299 TNVNSKNGGDWMMEIYDQ 316
              +S+   + +  +  +
Sbjct: 295 ARADSRKKNEAINNLAPK 312


>gi|254819058|ref|ZP_05224059.1| site-specific tyrosine recombinase XerC [Mycobacterium
           intracellulare ATCC 13950]
          Length = 232

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 65/237 (27%), Positives = 108/237 (45%), Gaps = 6/237 (2%)

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            +L R  S +K+F  +  +R +        ++  K   +LP  L  +             
Sbjct: 1   TTLARRTSAVKAFTAWAVRRGLLDTDPAARLQVPKAHRTLPAVL-RQDQALDALAAAKSG 59

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           + + + +  R+  I+ +LY  G+R+SE   L   ++      +R+ GKG+K R VP    
Sbjct: 60  AQQGEPMALRDRLIVEMLYATGIRVSELCGLDIDDVDTRHRLVRVLGKGNKQRSVPFGAP 119

Query: 206 VRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             +A+  +  D  P  +N +    L  G RG+ ++    +  + Q    +        H 
Sbjct: 120 AAEALDAWLADGRPALVNADSGPALLLGARGRRIDVRQARTVVHQTVAAVDGAPDMGPHG 179

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           LRHS ATHLL  G DLR +Q +LGH  L+TTQ+YT+V        +  ++DQ HP  
Sbjct: 180 LRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHV----AVSRLRAVHDQAHPRA 232


>gi|283479882|emb|CAY75798.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 351

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 84/324 (25%), Positives = 139/324 (42%), Gaps = 25/324 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +  ++WL +L +  G S  T+Q Y    R FL +      E   I    Q+S   + A
Sbjct: 21  LRQLAESWLAHLVVA-GRSPRTVQGYRERVRAFLXWC-----EPRGITYAPQVSLAVLEA 74

Query: 74  FISKRRTQKIGD------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP- 126
           +    +  +  D       S    L+ I+   ++L +R +   +    +   K+   LP 
Sbjct: 75  YQRWLQGYRRADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPA 134

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           +  +E +   ++ ++   T         RN AIL LL+  G+R SE   L   ++   + 
Sbjct: 135 QVFSEAETRRVLQSLDAGTP-----PGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRG 189

Query: 187 TLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQ 244
            + ++ GKG K  +VP+  +    +  Y       L        LF   +G  L  G   
Sbjct: 190 VVNVRRGKGGKDXVVPVGHAALMWLGRYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLT 249

Query: 245 RYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
               R +R    L  +   H  RH  AT +L NG D R IQ+ILGH +L TTQIYT V  
Sbjct: 250 AMAGRAIREGAHLKKAGACHIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVAI 309

Query: 304 KNGGDWMMEIYDQTHPSITQKDKK 327
            +    + +++  THP+  ++ +K
Sbjct: 310 GH----LQKVHAHTHPAEKRRTEK 329


>gi|302670606|ref|YP_003830566.1| tyrosine recombinase XerD [Butyrivibrio proteoclasticus B316]
 gi|302395079|gb|ADL33984.1| tyrosine recombinase XerD [Butyrivibrio proteoclasticus B316]
          Length = 292

 Score =  187 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 128/293 (43%), Gaps = 17/293 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +   LE  +  S  T+ SY  D  +    ++        I +I  ++   +  +IS 
Sbjct: 5   IDAFCLYLETVKKASANTISSYRRDLNRMASHMSNR-----GITSIADITDDRLHGYISS 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            + +     S+ RS+S I++F +YL +     ++   N+R  K + S PR +   +   L
Sbjct: 60  MQEEHCAGSSIIRSVSSIRAFFRYLLENGNIQDNPAENIRTPKAARSAPRIMTSYEIEAL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +       +     +  R+ AIL L+Y  GLR +E + L  +NI    + +R+     + 
Sbjct: 120 L-----SQTFPNDALGKRDKAILELMYATGLRTTELVELELENIDMSLNCIRL----GEN 170

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           R++P     ++A+ EY      ++   N      +F    G P++     + I+   +  
Sbjct: 171 RVIPYGKKAKEALNEYLLFARDEILSDNSASLQKVFVNYMGNPMSRQGLWKLIKTYVKRA 230

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           G+    T ++LRHSF  HL+ +G D+ ++Q ++G   LS    Y     KN  
Sbjct: 231 GIDADITPYSLRHSFTMHLIESGADINAVQDMMGLSGLSALSQYRKAKGKNKD 283


>gi|163788404|ref|ZP_02182850.1| tyrosine type site-specific recombinase [Flavobacteriales bacterium
           ALC-1]
 gi|159876724|gb|EDP70782.1| tyrosine type site-specific recombinase [Flavobacteriales bacterium
           ALC-1]
          Length = 376

 Score =  187 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 68/285 (23%), Positives = 134/285 (47%), Gaps = 30/285 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L++++  +  T++SY      F+ +           + + Q++  ++R +I K  
Sbjct: 109 SYLDKLQLKK-YANNTVKSYILAFETFINYHK--------AKELIQINENDVRNYILKLI 159

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +   D  +  +++ IK + + +        +    +   +K+  LP+ L+++  L ++ 
Sbjct: 160 QENKSDSYINIAINSIKFYYESVLGM----PNRFYQIERPRKAKKLPKVLSKEDVLKVI- 214

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIR 198
                    T   + ++  I+ LLY  G+R +E + L   +I   +  +RI   KG K R
Sbjct: 215 ---------TNTNNLKHKCIVSLLYSSGIRRNELIHLKISDIDSKRMLIRIDAAKGKKDR 265

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
              L  ++ K + +YY           +  +F G+ GK  +     + ++       + +
Sbjct: 266 YTLLSHALLKDLRDYYKQW------KPEKYIFEGLYGKQYSAQSVGQIVKNAAIKARIQI 319

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           + T H LRHSFATHLL +G D+R IQ +LGH    TT+IYT+V +
Sbjct: 320 TVTPHMLRHSFATHLLEDGVDIRQIQVLLGHSSTKTTEIYTHVAT 364


>gi|310813968|gb|ADP30794.1| IntI1 [Providencia rettgeri]
          Length = 313

 Score =  187 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 77/332 (23%), Positives = 137/332 (41%), Gaps = 64/332 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVNWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           SFAT LL +G D+R++Q +LGH  +STT IYT
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313


>gi|259909803|ref|YP_002650159.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224965425|emb|CAX56957.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 351

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 87/324 (26%), Positives = 139/324 (42%), Gaps = 25/324 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +  ++WL +L +  G S  T Q Y    R FL +      E   I    Q+S   + A
Sbjct: 21  LRQLAESWLAHLVVA-GRSARTAQGYGERVRAFLAWC-----EPRGITYAPQVSLAVLEA 74

Query: 74  FISKRRTQKIGD------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP- 126
           +    +  +  D       S    LS ++   ++L KR     S    +   K+   LP 
Sbjct: 75  YQRWLQGYRRADGKQLVVNSQLHRLSAVRMLFRWLLKRHHILYSPAEQLELPKEERRLPA 134

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           +  +E +   ++ ++   T         RN AIL LL+  G+R SE   L   ++   + 
Sbjct: 135 QVFSEAETRRVLQSLDAGTP-----PGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRG 189

Query: 187 TLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQ 244
            + ++ GKG K R+VP+  +    +  Y       L        LF   +G  L  G   
Sbjct: 190 VVNVRRGKGGKDRVVPVGHTALMWLARYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLT 249

Query: 245 RYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
               R +R    L  +   H  RH+ AT +L NG D R IQ+ILGH +L TTQIYT V  
Sbjct: 250 AMAGRAIRSGAHLKKAGACHIFRHTMATQMLENGADTRHIQAILGHEKLETTQIYTRVAI 309

Query: 304 KNGGDWMMEIYDQTHPSITQKDKK 327
            +    + +++  THP+  ++ +K
Sbjct: 310 GH----LQKVHAHTHPAEKRRTEK 329


>gi|257469328|ref|ZP_05633422.1| integrase family protein [Fusobacterium ulcerans ATCC 49185]
          Length = 294

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 74/300 (24%), Positives = 127/300 (42%), Gaps = 11/300 (3%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L K  +++L   E     S  T++S + D  Q   +L    +    I+   +++   +R 
Sbjct: 4   LDKNIKDFLYYAEFGENKSLNTIKSLKKDLSQLSEYLKNIEK----IEEASKITPVMLRG 59

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           FI   +  ++G RS+ R LS ++SF KYL K  +   + I  + +       P  L  ++
Sbjct: 60  FIIALQKNEVGKRSINRKLSSLRSFFKYLMKNNLIKNNPIEIINSPSFEAEKPDILTLEE 119

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L D +     +       R+  IL LLY  G+  +E LS+  Q    D  TL +   
Sbjct: 120 INKLRDVI-----NTDNANGLRDRLILELLYSSGITSTEMLSIGEQVFDLDSRTLLV-SN 173

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G   R V      R+    Y +              LF    G  L+    +R + +   
Sbjct: 174 GKANRYVFFSQRTREYFKRYVEAKKEKYGDKYNSSILFVNGSGSRLSDRSLRRIVDRYAA 233

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    + ++ RH+FA HLL+ G  L  +Q ++GH  + +T+IY  +  K   D+M +
Sbjct: 234 RAGITREISPYSFRHTFAVHLLTKGMSLNFLQELMGHVTIESTKIYQEILYKIPFDFMNQ 293


>gi|186471690|ref|YP_001863008.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184197999|gb|ACC75962.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 343

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 65/306 (21%), Positives = 124/306 (40%), Gaps = 17/306 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR- 79
           +   L   RG+S  T++SY       L F A  +   I    +  L+   ++ F+     
Sbjct: 17  FQDYLPTLRGVSVHTIRSYRDAVVLLLQFTARESRRPIEALDLSDLNADHVKQFLKFLES 76

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN---ILNMRNLKKSNSLP-RALNEKQAL 135
            +     +    L+ I +F +++        +    +L +   + +   P   L   +  
Sbjct: 77  ERGNSIATRNARLAAIHAFARFVIAEHPEHLAPFQQVLGIPFKRGAREAPIEYLETAEID 136

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLRIQGKG 194
           TL     L T  +++    R+ A+  L++  G R+ E L+L   ++  D    +R+ GKG
Sbjct: 137 TL-----LTTIDQSRPAGQRDFALFALMFNTGARVQEILNLRICDLRLDPPPQVRLHGKG 191

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +K+R+ P+ P   + + E     P     + +LP+F   RG  ++    +  +R+     
Sbjct: 192 NKVRVCPIWPRTAQLLRELIRTRPLVAQGSAELPVFVNCRGTQMSRFGVRYLLRKYMLIA 251

Query: 255 G------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                         H+LRH+ A  LL  G D  +I   LGH  L+TT  Y   +      
Sbjct: 252 STRNPTLAHKEIHPHSLRHTTAIQLLKAGVDFATISQWLGHASLNTTMRYARADIDLKRQ 311

Query: 309 WMMEIY 314
            + +++
Sbjct: 312 ALAQVF 317


>gi|48477921|ref|YP_023627.1| DNA integration/recombination/invertion protein [Picrophilus
           torridus DSM 9790]
 gi|48430569|gb|AAT43434.1| DNA integration/recombination/invertion protein [Picrophilus
           torridus DSM 9790]
          Length = 276

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 74/306 (24%), Positives = 138/306 (45%), Gaps = 33/306 (10%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +   +N+   +  ER  S  T++ Y+   R F+ ++    E       I      + +  
Sbjct: 1   MDYIKNFENYMIGER-KSLNTIKEYKSLVRDFINYINKKPE------DINDFDIEDYKRH 53

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++    ++    S   S+  IK FL+    +   T +        +++  +P  LN  +A
Sbjct: 54  LA--VDKRYSKSSQYLSMKAIKLFLQSRDIKIPRTLN------APRRNKKIPVYLNTNEA 105

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GK 193
             L+         +    + ++ AI+ LL   G+R+SE  +L  ++I  +++ + ++ GK
Sbjct: 106 KNLI---------KASSNNRKHLAIVSLLLYSGIRVSELCNLKIEDIDLNENIIYVRSGK 156

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K RI  +     + +  YY+    D         F   +    +    +R I++L   
Sbjct: 157 GGKDRIAIIPDECSEILRSYYN----DRLKYPGDTFFISNKKSRYDTSTIERLIKKLAVR 212

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    T H LRH+FAT +L NGGD+R IQ ILGH  ++TTQIYT+++       + ++
Sbjct: 213 AGIEKHVTPHVLRHTFATSVLRNGGDIRFIQQILGHASVATTQIYTHIDD----GTLKDM 268

Query: 314 YDQTHP 319
           Y +  P
Sbjct: 269 YKKHRP 274


>gi|153853140|ref|ZP_01994549.1| hypothetical protein DORLON_00534 [Dorea longicatena DSM 13814]
 gi|149753926|gb|EDM63857.1| hypothetical protein DORLON_00534 [Dorea longicatena DSM 13814]
          Length = 366

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 69/308 (22%), Positives = 122/308 (39%), Gaps = 26/308 (8%)

Query: 32  SKLTLQSYECDTRQFLIFL-------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI- 83
           S  T  +Y  D R F  FL         YT ++ T Q +  L   +I  ++   +  K  
Sbjct: 54  SARTRINYAYDIRVFFHFLMENNPVYKNYTIDRFTPQDLENLEPVDIEEYLEYLKVYKRD 113

Query: 84  --------GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                   G++ L R +S ++SF  Y  K +I  ++  L +   K  +     L+  +  
Sbjct: 114 EDGELITNGEKGLARKMSALRSFYGYYFKHRIIQKNPTLLVDMPKLHDKAIIRLDTDEVA 173

Query: 136 TLVDNVLLHTSHET-------KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
            L+D V     H T       K    R+ AIL LL G G+R+SE + L  +++    + +
Sbjct: 174 LLLDFVESAGEHLTGQALNYYKKTRDRDIAILTLLLGTGIRVSECVGLDIKDVDFKNNGI 233

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRY 246
            +  KG    +V     V +A+  Y              +  LF   + K +     +  
Sbjct: 234 MVTRKGGNQMVVYFGDEVAEALKNYMAGDREAATPLPGHEQALFLSTQRKRMGVQAVENM 293

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKN 305
           +++  R +      T H LR ++ T L    GD+  +  +LGH  ++TT + Y  ++   
Sbjct: 294 VKKYARQVTPNKKITPHKLRSTYGTSLYKETGDIYLVADVLGHKDVNTTKKHYAAIDDNR 353

Query: 306 GGDWMMEI 313
                  +
Sbjct: 354 RRKAASAV 361


>gi|160942095|ref|ZP_02089410.1| hypothetical protein CLOBOL_06983 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434986|gb|EDP12753.1| hypothetical protein CLOBOL_06983 [Clostridium bolteae ATCC
           BAA-613]
          Length = 218

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 60/227 (26%), Positives = 102/227 (44%), Gaps = 11/227 (4%)

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +K+F  ++ K     +     ++  K     P  L+  +   L+D   + TS E +    
Sbjct: 1   MKAFFNFMFKEGRIRKDPAELLKAPKIEKKAPVILSVNEVNALLDQPGMTTSKEIR---- 56

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
            + A+L LLY  G+R+SE + L   ++      +  +  G K R+VP     ++A+  Y 
Sbjct: 57  -DKAMLELLYATGIRVSELIGLELSDLNMQVGYITCRD-GQKERMVPFGKPAKQALSVYL 114

Query: 215 DL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
           +      L       LF    GK ++   F + I+      G+    T HTLRHSFA HL
Sbjct: 115 EKGRSQLLKGKESQWLFTNCSGKAMSRQGFWKIIKYYGEKAGIQADITPHTLRHSFAAHL 174

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           +  G D+ ++Q++LGH   +TT +Y   +    G+ + E Y    P 
Sbjct: 175 IRGGADIHAVQAMLGHSDSTTTHMYAAYS----GNTVGETYRAALPR 217


>gi|241992584|gb|ACS73643.1| IntI1 [uncultured bacterium]
          Length = 315

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 138/334 (41%), Gaps = 64/334 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLAPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT V
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTQV 315


>gi|110802062|ref|YP_699092.1| tyrosine recombinase XerD [Clostridium perfringens SM101]
 gi|110682563|gb|ABG85933.1| tyrosine recombinase XerD [Clostridium perfringens SM101]
          Length = 290

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 63/310 (20%), Positives = 138/310 (44%), Gaps = 23/310 (7%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L+ + + +L+++    G  K T+ +Y  D   +L F+     +      + + SY  I 
Sbjct: 3   DLVSKYEVYLESI----GKRKNTVSAYITDVSMYLDFVYEKGLK------VSEDSYPLI- 51

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +++   +       S++R++  +++F  +L   +   +   L M+  +     P  L  +
Sbjct: 52  SYVQHLKESHKSPSSIQRTIISLRNFYNFLVAEEFLKKVPNLTMKKERIEKKKPLVLTVE 111

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   ++++  + T         R+ A+L L+Y  G+++SE +SL  ++I  D S +  + 
Sbjct: 112 EINKIMNSTNVLTEK-----GIRDKALLELMYATGMKVSELISLRIEDINLDSSFVNCRD 166

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
                R++P+    +++I  Y  +   + N      LF  + G+P+      R +++   
Sbjct: 167 SRGYERLIPIGKEAKESIKRYIVVR--EDNSKGSDKLFLNMSGEPITRQGVWRIVKEYAV 224

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGDWMM 311
              +      +T RHSFA HLL NG + + +Q +LG    +    Y ++       + + 
Sbjct: 225 IANIGKDINLNTFRHSFAVHLLQNGANAKVVQELLG----NQVMTYIDMYYDIINNEKIN 280

Query: 312 EIYDQTHPSI 321
            IY + HP  
Sbjct: 281 NIYRKAHPRA 290


>gi|212635507|ref|YP_002312032.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella
           piezotolerans WP3]
 gi|212556991|gb|ACJ29445.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella
           piezotolerans WP3]
          Length = 317

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 76/314 (24%), Positives = 149/314 (47%), Gaps = 24/314 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+ L + +G S  T+++     ++F+I+      ++  I TI  ++   +  + + 
Sbjct: 13  VEYYLE-LCLAKGQSSDTVRNKRGGLKKFIIWC-----QERNISTIDHINLDLMDDYAAY 66

Query: 78  RRT-------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL- 129
             +       + +G    +  L+ +K+F+KY+ ++ + +++ + ++    K + +P+AL 
Sbjct: 67  LNSYRKKLDNEPLGPAQKRNLLTYVKTFVKYMHRKGLLSKNTLSDIELPSKGHQIPKALY 126

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           + ++   +++  LL           R+ A L + +  G+R  E + L   +I      + 
Sbjct: 127 SVEEIEVILEQPLLF-----GIKGLRDRATLEIFFATGIRRGELVKLNVDDIDFTGKMVC 181

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           + GKG K R+VP+     + +  Y   + P    ++    LF    GK   PG       
Sbjct: 182 VHGKGKKERLVPISQRGCEWLAFYTGKIRPRFAFISSGKALFLANNGKRYVPGKLSDMAS 241

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           Q  +  G   +   H  RH+ AT +L NG DLR IQ +LGH  + TTQ+YT+V+ K    
Sbjct: 242 QYVKLAGFDRTGACHLFRHNTATTMLDNGADLRHIQEMLGHASILTTQLYTHVSRK---- 297

Query: 309 WMMEIYDQTHPSIT 322
            + E+Y+ THPS  
Sbjct: 298 KLSEVYEATHPSAE 311


>gi|196251170|ref|ZP_03149847.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|196209334|gb|EDY04116.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 310

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 64/313 (20%), Positives = 138/313 (44%), Gaps = 21/313 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           + +   +  + ++++ E+ R L + T++ Y  +   F+  L     E      + + +  
Sbjct: 10  IEYTFEELLEIFIEDCEL-RNLREHTIKYYRSELNAFIKLLKEQEIE----LRVSEWTGE 64

Query: 70  EI-RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            I R  I   + + +   S+   L  +++F  +L+ R +   + + +++ LK    +   
Sbjct: 65  TIKRNIIMYMKEKGLKTVSINSRLRALRAFFNFLEGRNLIKSNPMKDIKLLKDRKRIVET 124

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
            + +Q   L     L T     ++  R+  I+ LL   G+R++E + +   +I+ +Q  +
Sbjct: 125 FDNQQIKALFKACDLRT-----FVGLRDYTIMMLLLETGVRVNELVGIKTTDIIWEQKVI 179

Query: 189 RIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           RI+  KG   R VP+   +   + +Y  +            LF      PL+    Q  I
Sbjct: 180 RIRNTKGGFERFVPIQDKMINQLKKYIAVR----GSVDTDYLFITRDDTPLSKKQVQDRI 235

Query: 248 RQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           ++  +  G+  +  + HT RH+FA   + NG +   +Q+ILGH  L  T++Y N+     
Sbjct: 236 KEYGKKAGIKNVRCSPHTFRHTFAKLCVLNGANAFQLQAILGHTSLEMTKVYVNL----F 291

Query: 307 GDWMMEIYDQTHP 319
            + + + + +  P
Sbjct: 292 SNEVQQGHAKFSP 304


>gi|163855344|ref|YP_001629642.1| tyrosine recombinase xerD [Bordetella petrii DSM 12804]
 gi|163855612|ref|YP_001629910.1| putative integrase/recombinase [Bordetella petrii DSM 12804]
 gi|163259072|emb|CAP41371.1| Tyrosine recombinase xerD [Bordetella petrii]
 gi|163259340|emb|CAP41640.1| putative integrase/recombinase [Bordetella petrii]
          Length = 349

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 82/326 (25%), Positives = 138/326 (42%), Gaps = 21/326 (6%)

Query: 1   MEGNNLPEIVSFELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
           M  +  P   ++ L K    +L ++L   RG+S  T+ SY       L F+      KI 
Sbjct: 1   MTKHRQPTDFAYALSK----FLGEHLAAHRGMSANTVASYRDTFSILLRFMEHQAGVKIE 56

Query: 60  IQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKY---LKKRKITTESNILN 115
              I  L + +I+AF+    + +     +  + LS I SF ++   +    I     ILN
Sbjct: 57  RICIADLHHKQIQAFLLWLEQDRGNSVNTRNQRLSAITSFFRFVMSIYPEHILLCQQILN 116

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           ++  K+ +S    L+ +    L+        +  K +  R+  +L +LY  G R+ E  +
Sbjct: 117 IQFKKRQSSTVDYLSIEAVELLL-----QQPNARKPMGRRDLVLLSVLYDTGARVQELAN 171

Query: 176 LTPQNIMDDQ-STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +   ++     +T R+ GKG K+R+VPLL      ++ Y              PLF    
Sbjct: 172 MNVSDLKLTAPATARLLGKGAKVRLVPLLAPTTALLVSYLQEHHGQYLEQKDRPLFCNNV 231

Query: 235 GKPLNPGVFQRYIRQLRRYLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
            K L        +++  R +       L    + HTLRHS A HLL  G +L  I+ +LG
Sbjct: 232 RKRLTRAGISYILQKYAREVSQGNPGLLGTKISPHTLRHSKAMHLLQAGVNLIYIRDLLG 291

Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIY 314
           H  + TT+IY   +  +    +   Y
Sbjct: 292 HSDIKTTEIYARADLDSKKAALEMAY 317


>gi|186474623|ref|YP_001863594.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198582|gb|ACC76544.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 343

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 64/306 (20%), Positives = 125/306 (40%), Gaps = 17/306 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR- 79
           +   L   RG+S  T++SY       L F A  +   I    +  L+   ++ F+     
Sbjct: 17  FQDYLPTLRGVSVHTIRSYRDAVVLLLRFTARESRCPIEALDLSDLNADHVKRFLKFLES 76

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN---ILNMRNLKKSNSLP-RALNEKQAL 135
            +     +    L+ I +F +++        +    +L +   + +   P   L   +  
Sbjct: 77  ERGNSIATRNARLAAIHAFARFVIAEHPEHLAPFQQVLGIPFKRGAREAPIEYLETAEIE 136

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLRIQGKG 194
           TL+      T  +++    R+ A+  L++  G R+ E L+L   ++  D    +R++GKG
Sbjct: 137 TLL-----TTIDQSRPAGQRDFALFALMFNTGARVQEILNLRICDLRLDPPPQVRLRGKG 191

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +K+R+ P+ P   + + E     P     + +LP+F   RG  ++    +  +R+     
Sbjct: 192 NKVRVCPIWPRTAQLLRELIRTRPLVAQGSAELPVFVNCRGTQMSRFGVRYLLRKYMLIA 251

Query: 255 G------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                         H+LRH+ A  LL  G D  +I   LGH  L+TT  Y   +      
Sbjct: 252 STRNPTLAHKEIHPHSLRHTTAIQLLKAGVDFATISQWLGHASLNTTMRYARADIDLKRQ 311

Query: 309 WMMEIY 314
            + +++
Sbjct: 312 ALAQVF 317


>gi|27804830|gb|AAO22873.1| integrase [Myxococcus xanthus]
          Length = 209

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 65/202 (32%), Positives = 96/202 (47%), Gaps = 10/202 (4%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           + +  LP  L  ++   L+         E      R+ A+L +LY  GLR+SE   L   
Sbjct: 1   RSARKLPSFLTLEEVEQLL-----AAPDERTSTGVRDKAMLEVLYATGLRVSELCGLGIN 55

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPL 238
           ++      L  +GKG K R+VPL     + +  Y     P  L       LF   RG   
Sbjct: 56  DVQLTAGYLVAKGKGAKERLVPLGSVAIEKVQAYLAESRPAVLGRRKSQALFVTPRGSGF 115

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
               F + +++     G+    + H LRHSFATHL+  G DLR++Q +LGH  L+TTQIY
Sbjct: 116 TRQGFWKLLKRYALKAGILKPLSPHKLRHSFATHLVERGADLRAVQQMLGHADLATTQIY 175

Query: 299 TNVNSKNGGDWMMEIYDQTHPS 320
           T+VN+      +  +YD+ HP 
Sbjct: 176 THVNAAR----LRSVYDEFHPR 193


>gi|13445488|gb|AAK26251.1|AF263519_1 integrase INTI1 [Pseudomonas aeruginosa]
          Length = 337

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 80/357 (22%), Positives = 142/357 (39%), Gaps = 65/357 (18%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q Y      F+ F          +     
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTGQGYVNWVCAFIRFH--------GVGHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+      +K+   +  ++L+ +  F   +    +     +  +   +    
Sbjct: 56  LGSSEVEAFLFWLAHERKVSVSTHCQALAALLFFYGKVLCTDL---PWLQEIGRPRPLRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVCIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           SFAT LL +G D+R++Q +LGH  +STT IYT+V  K GG  +    D   P  +++
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVL-KVGGAGVRSPLDALPPLTSER 337


>gi|126665396|ref|ZP_01736378.1| putative integrase/recombinase [Marinobacter sp. ELB17]
 gi|126669108|ref|ZP_01740038.1| putative integrase/recombinase [Marinobacter sp. ELB17]
 gi|126626435|gb|EAZ97102.1| putative integrase/recombinase [Marinobacter sp. ELB17]
 gi|126630024|gb|EBA00640.1| putative integrase/recombinase [Marinobacter sp. ELB17]
          Length = 331

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 74/300 (24%), Positives = 121/300 (40%), Gaps = 21/300 (7%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L++L  ER L+  T +SY     Q L +LA    + I   T+   S   +R F+S    Q
Sbjct: 16  LEHLVAERNLALNTQKSYRDMLMQLLPYLAGKANKAIDRLTVDDFSPQAVRLFLSHMEQQ 75

Query: 82  K-IGDRSLKRSLSGIKSFLKY---LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +     +  + L GI +  ++        I   + I  +   K S      L++ +   L
Sbjct: 76  RNCTISTRNQRLGGIHALARFIAEHSPEHIGWCAQIRLIPFKKTSQPAIIYLDKPEMDAL 135

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L    +      R  A+L  LY  G R+SEA+ L   +I      +R+ GKG+K 
Sbjct: 136 -----LAAPDDHTEQGRREQALLLFLYNSGARVSEAVQLKIGDIDWHAQCVRVVGKGNKQ 190

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG-- 255
           R  PL  S  + +    D            P+F     +P+        +++        
Sbjct: 191 RRCPLWTSTLERLHVLVDGR------EATQPVFLNRCHQPMTRSGIHTLVKRCAARACAR 244

Query: 256 ----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               L    + H +RHS A HLL  G D+ +I++ LGH  L+TT IY  ++ +     + 
Sbjct: 245 APSLLNKPVSPHVIRHSTACHLLQAGVDINTIRAWLGHVSLTTTNIYAEIDLETKARALA 304


>gi|188585653|ref|YP_001917198.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350340|gb|ACB84610.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 283

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 137/296 (46%), Gaps = 38/296 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + + L++ +G ++ T+++Y    ++FL        ++            +I++ I   
Sbjct: 2   REFEKTLKL-KGYTEKTIKAYIGHIKRFLKVGLNINNKE------------DIQSHIIFL 48

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE-------SNILNMRNLKKSNSLPRALNE 131
                    + +++S +K     + K+            +  + +   KK   LP  L++
Sbjct: 49  LENNNSHSYVNQAISALKLLNNEITKKGYVDVHGIKTCVNQQIKVNRPKKERKLPNVLSQ 108

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI- 190
           K+ L L+          T   + ++ AIL ++Y  GLR+ EA+ L P+++  +Q  + I 
Sbjct: 109 KEVLELL----------TVTTNIKHKAILCIIYSSGLRVGEAVRLKPEDLDGEQKIIHIK 158

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQ 249
           QGKG K R   L  +  K +  YY +         +  LF G      L+    Q+  ++
Sbjct: 159 QGKGRKDRYTILSDNALKILRNYYKIY------QPKKWLFPGQNENLHLSERSVQKIFQK 212

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            ++   +    + H+LRHSFATHLL  G DLR IQ +LGH    TT+IYT++ ++N
Sbjct: 213 AKQKANINKKVSVHSLRHSFATHLLEAGTDLRYIQKLLGHESSKTTEIYTHITTQN 268


>gi|310766358|gb|ADP11308.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 351

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 86/324 (26%), Positives = 143/324 (44%), Gaps = 25/324 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +  ++WL +L    G S  T+Q Y    R FL +      E   I    Q+S   + A
Sbjct: 21  LRRLAESWLAHLAAA-GRSARTVQGYGERVRAFLAWC-----ELRGITYAPQVSLAVLEA 74

Query: 74  FISKRRT------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP- 126
           +    ++      +++     +  LS I+  L++L KR     +    +   K+   LP 
Sbjct: 75  YQRWLQSYRRADGRRLAVNGQRHLLSAIRMLLRWLLKRHHILYNPAELLELPKEERRLPA 134

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           +  +E++   ++ ++   T         RN AIL LL+  G+R +E   L   ++   + 
Sbjct: 135 QVFSEEETRRVLQSLDAGTP-----PGLRNRAILELLWSTGIRRTELAGLLLSDVDFTRG 189

Query: 187 TLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQ 244
            + ++ GKG K R+VP+  +    +  Y       L        LF   +G  L  G   
Sbjct: 190 VVNVRRGKGGKDRVVPVGHAALMWLARYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLT 249

Query: 245 RYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
               R +R    L  +   H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V  
Sbjct: 250 AMAGRAIREGAHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAI 309

Query: 304 KNGGDWMMEIYDQTHPSITQKDKK 327
            +    + +++  THP+  ++ +K
Sbjct: 310 GH----LQKVHAHTHPAEKRRTEK 329


>gi|310768311|gb|ADP13261.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 351

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 83/324 (25%), Positives = 139/324 (42%), Gaps = 25/324 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +  ++WL +L    G S  T+Q Y    R  L +      E   I    Q+S   + +
Sbjct: 21  LRQLAESWLSHLAAA-GRSPRTVQGYRERVRALLAWC-----EPRGITYAPQVSLAVLES 74

Query: 74  FISKRRT------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP- 126
           +    +       +++     +  LS I+  L++L +R     +    +   K+   LP 
Sbjct: 75  YQRWLQGYRRADGRQLAVNGQRHLLSAIRMLLRWLLQRHHILYNPAELLELPKEERRLPA 134

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           +  +E +   ++ ++   T         RN AIL LL+  G+R SE   L   ++   + 
Sbjct: 135 QVFSEAETRRVLQSLDAGTP-----PGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRG 189

Query: 187 TLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQ 244
            + ++ GKG K R+VP+  +    +  Y       L        LF   +G  L  G   
Sbjct: 190 VVNVRRGKGGKDRVVPVGHAALMWLGRYLQDVRPRLAQRFDSGHLFISHKGTGLAHGTLT 249

Query: 245 RYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
               R +R    L  +   H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V  
Sbjct: 250 AMAGRAIRSGAHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAI 309

Query: 304 KNGGDWMMEIYDQTHPSITQKDKK 327
            +    + +++  THP+   + ++
Sbjct: 310 GH----LQKVHAHTHPAEKGRTEQ 329


>gi|227529183|ref|ZP_03959232.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus
           vaginalis ATCC 49540]
 gi|227350908|gb|EEJ41199.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus
           vaginalis ATCC 49540]
          Length = 292

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 63/310 (20%), Positives = 131/310 (42%), Gaps = 20/310 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +   +++  L  ++G S+ T +SY  D  +   F          I T +++    +  
Sbjct: 1   MQETIDHFIDYLMTQKGRSQNTRESYRHDLERCAAFFTAS-----GINTWQEVDQYAVIN 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS-NSLPRALNEK 132
            I++ + +     ++ R++S ++   +YL +R     + +  +   + +    P  L+++
Sbjct: 56  VIAEMKREDRASTTINRTISSLRQLYRYLLRRHEVQVNPMDYIDLEEVATRKAPVTLSQQ 115

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L           T     R+  +L L+YG G+ +SE ++L    +  D   L++Q 
Sbjct: 116 EIEQLF-----AIPDTTTVNGLRDRTLLELMYGTGMLVSELINLKRSQVHFDLQILQLQD 170

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
                RIVPL    ++ +  Y          +    +F   RG  +      +  +++ R
Sbjct: 171 NPRHQRIVPLGKIAKEWLARYL----RATAGDSSDYVFLNARGGQMTRQGVWKNFKEIVR 226

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR-LSTTQIYTNVNSKNGGDWMM 311
             GL    T  TLRH+F   LL NG   +++Q++LG      + + Y   N++     ++
Sbjct: 227 KSGLSKKITLQTLRHTFTADLLKNGASWQAVQTLLGRETGRESFESYIRFNTQE----LV 282

Query: 312 EIYDQTHPSI 321
            IY + HP  
Sbjct: 283 TIYRRCHPRA 292


>gi|134299970|ref|YP_001113466.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134052670|gb|ABO50641.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 301

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 144/301 (47%), Gaps = 15/301 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L   E  R LS  TL+ Y+  T +F+ +     +  I I +++     +   ++ K   
Sbjct: 10  FLIYQES-RNLSPRTLEWYKYITAKFINYC---NDNDIQIDSLKTPEARQWVNWLQKGSE 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            +    S+   +  IK+   Y  + +   ++    +  +K  N++       +   +   
Sbjct: 66  TQYKGNSINCHIRAIKTMFNYFMEDEYIDKNPFHKVSKIKVDNTIIHTFEPDEIKKM--- 122

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L   ++  + D R++ +L ++Y CGLR+SE ++L   +I  D++  ++ GKG K R+V
Sbjct: 123 --LAQLNKNTFYDLRDNLMLRIMYDCGLRVSEIINLKITDIDTDKNMFKVFGKGHKERMV 180

Query: 201 PLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-L 258
           P   SV++ +++Y       +  +  +  L    +G PL+     R IR + +  G+   
Sbjct: 181 PFGRSVKRELVKYLPKRNKAVPHDLDEGYLLCTNQGTPLHKRNILRKIRIVGQGAGIEGK 240

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + HT RHSFA   L  GGDL S+Q+I+GH  L++T+ Y  + +++    + + + Q  
Sbjct: 241 RLSPHTYRHSFAKQYLMAGGDLFSLQTIMGHSSLNSTRRYITLLTED----IQKQHRQFS 296

Query: 319 P 319
           P
Sbjct: 297 P 297


>gi|288556218|ref|YP_003428153.1| integrase family protein [Bacillus pseudofirmus OF4]
 gi|288547378|gb|ADC51261.1| integrase family protein [Bacillus pseudofirmus OF4]
          Length = 362

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 89/344 (25%), Positives = 157/344 (45%), Gaps = 31/344 (9%)

Query: 1   MEGNNLPEIVSFELLKERQN--WLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTE 55
           ++ + LPE +  +  K  Q   ++Q   I R   G SK T+Q Y  D   F  ++   +E
Sbjct: 16  LKTDFLPEAIKQQYRKIDQLPLFIQQYLISRVSLGYSKQTIQRYIYDYHYFFHYVKRVSE 75

Query: 56  EK------ITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKIT 108
           +       +T++   Q+    I  +I+    + +   R++ R +S ++S   YL K+  T
Sbjct: 76  DPSFQPAAVTLKDFLQIEKAAIEHYITYLSLEVENEPRTINRKISALQSLFDYLVKKGET 135

Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVL------LHTSHETKWIDARNSAILYL 162
           T + +L +   K     P  L   +A  L+  V              + + AR+ A++YL
Sbjct: 136 TTNPVLGVERPKVGKRDPVFLTINEAQLLLKAVKDTSSLSFRQKKYAEKLLARDYAVIYL 195

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           L   GLRISE  ++  ++   +++ L++QGKG+K R +PL       +  Y D  P    
Sbjct: 196 LISSGLRISELANVKMKDFDKEENILKVQGKGNKERSIPLSYETIDVLTYYLDSLPIKSR 255

Query: 223 LN-IQLPLFRGIRGK------PLNPGVFQRYIRQLRRYLGL------PLSTTAHTLRHSF 269
               +  LF G   +       +     Q+ I++               + TAH LRHSF
Sbjct: 256 PKQSEDHLFIGYDFQSQEYTKQVTVSALQKMIQRQLHRAKQYAPSLQHKTITAHKLRHSF 315

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           AT L++ G D+ ++QS+LGH  ++TTQ+Y +V      + +  +
Sbjct: 316 ATALVAKGVDVLTVQSLLGHESVATTQVYAHVQDDARKEAITRL 359


>gi|260892612|ref|YP_003238709.1| integrase family protein [Ammonifex degensii KC4]
 gi|260864753|gb|ACX51859.1| integrase family protein [Ammonifex degensii KC4]
          Length = 285

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 131/287 (45%), Gaps = 23/287 (8%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RGLS  T + Y    R+F  +L            I +++  ++ ++    + +     ++
Sbjct: 17  RGLSPGTAEVYLGHVRRFFGWL--------GCADITEVTPFDVASYRRHLQEKGRKPATV 68

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
             +L+ + SF  + K+  + +      +R + +    PR L +++    +  V  H S  
Sbjct: 69  NNALNALSSFFSWAKEAGLVSSDPTEGVRQVPEDRPAPRWLGKRELGRFLRAVQKHGS-- 126

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ--STLRIQGKGDKIRIVPLLPSV 206
                 R+ A++ LL   GLR+SEA+SL  ++++  +    +R++GKG K R VPL  +V
Sbjct: 127 -----PRDRALVALLLHAGLRVSEAVSLRLEDVVIRERSGFVRVRGKGGKYREVPLNVTV 181

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           R+ + EY      +L       LF G  G+ L     ++   +L R  G+    T H LR
Sbjct: 182 RRVLKEYL----AELPPQEGGWLFPGKGGEYLTRFAVEKLFARLSRLSGV--EVTPHRLR 235

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           H+F   L+  G  L  +  + GH  L+TT  YT    ++    + ++
Sbjct: 236 HTFCKWLIDAGESLDKVALLAGHSNLNTTARYTRPGVEDLERAVEKL 282


>gi|283479890|emb|CAY75806.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 351

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 83/324 (25%), Positives = 141/324 (43%), Gaps = 25/324 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +  ++WL +L +  G S  T+Q Y    R FL +      E   I    Q+S   + A
Sbjct: 21  LRQLAESWLAHLVVA-GRSPRTVQGYRERVRAFLAWC-----EPRGITYAPQVSLAVLEA 74

Query: 74  FISKRRTQKIGD------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP- 126
           +    +  +  D       S    L+ I+   ++L +R +   +    +   K+   LP 
Sbjct: 75  YQRWLQGYRRADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPA 134

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           +  +E +   ++ ++   T         RN AIL LL+  G+R +E  +L   ++   + 
Sbjct: 135 QVFSEAETRRVLQSLDAGTP-----PGLRNRAILELLWSTGIRRTELANLLLSDVDAVRG 189

Query: 187 TLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQ 244
            + ++ GKG + R+VP+  +    +  Y       L        LF   +G  L  G   
Sbjct: 190 VVNVRRGKGGRDRVVPVGNAALMWLARYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLT 249

Query: 245 RYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
               R +R    L  +   H  RH  AT +L NG D R IQ+ILGH +L TTQIYT V  
Sbjct: 250 AMAGRAIRSGAHLKKAGACHIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVAI 309

Query: 304 KNGGDWMMEIYDQTHPSITQKDKK 327
            +    + +++  THP+  ++ +K
Sbjct: 310 GH----LQKVHAHTHPAEKRRTEK 329


>gi|329963595|ref|ZP_08301073.1| integron integrase [Bacteroides fluxus YIT 12057]
 gi|328528500|gb|EGF55473.1| integron integrase [Bacteroides fluxus YIT 12057]
          Length = 372

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 125/287 (43%), Gaps = 30/287 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L+  R  S  T++ Y    R F                I  ++  EI  ++   
Sbjct: 94  EGYLEKLQQVR-YSDHTVRVYTSYFRDFQQHFEGRK--------IETVTPGEINDYLLYL 144

Query: 79  -RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + I      + ++ IK + + +  ++         +   K+  +LP  L++++   +
Sbjct: 145 IHEKNISSCQQNQRINAIKFYYEKVLGQERR----CYKVNRAKREKTLPDVLSKEEIKKI 200

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDK 196
           +D             D R   +  +LY  GLRISE L L P +I + +S +R++ GKG K
Sbjct: 201 LDA---------TVTDLRFFCMFSILYSAGLRISELLELKPGDINESRSLIRVRQGKGKK 251

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R   L   + K + EY  L         ++ LF    G+P    +  + ++   R  G+
Sbjct: 252 DRYTLLSKPLMKKLTEYNRLY------KPKVWLFEHRPGEPFTESIVSKRLKAAAREAGI 305

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
                 H LRHSFATHLL  G D++ ++ ++GH  + TT+ Y ++  
Sbjct: 306 TKRIYPHLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHIAD 352


>gi|164633081|gb|ABY64756.1| IntI1 [Klebsiella pneumoniae]
          Length = 317

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 76/333 (22%), Positives = 137/333 (41%), Gaps = 64/333 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           SFAT LL +G D+R++Q +LGH  +STT IY +
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYRH 314


>gi|50122330|ref|YP_051497.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|50122339|ref|YP_051506.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|49612856|emb|CAG76306.1| probable integrase/recombinase protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612865|emb|CAG76315.1| probable integrase/recombinase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 344

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 81/311 (26%), Positives = 138/311 (44%), Gaps = 25/311 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L++L      S  T+++Y    R F+ +      E+  +    Q+S + + A+     
Sbjct: 27  AYLEHLTAT-NHSPRTVEAYSERLRPFVTWC-----EERGLTQAAQVSLSVLEAYQRHLH 80

Query: 80  TQKIGD-RSLKR-----SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEK 132
             +  D + L +      LS I+   ++L +R     +    +   K    LP + L+E+
Sbjct: 81  GYRKADGKPLAQGGQLNRLSAIRGLFRWLLQRHHILYNPAEQITLPKAEKRLPAQILSEE 140

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ- 191
           +   +++               RN A+L +L+  GLR SE   L   ++   +  L ++ 
Sbjct: 141 ETEAVME-----AQDTDTLTGLRNRAVLEMLWSTGLRRSELSGLMLADVDVGRGVLVVRQ 195

Query: 192 GKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQ 249
           GKG+K R+VP+       +  Y D + P     +    LF  I GK L          R 
Sbjct: 196 GKGNKDRVVPVGLRALVWVQRYLDAVRPRLTTKHDSGYLFVTIWGKRLARSTLTILAGRA 255

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           +R    L  +   H  RHS AT +L  G D R IQ+ILGH +L TTQIYT V   +    
Sbjct: 256 IRDDAHLKKAGACHVFRHSMATQMLERGADTRHIQAILGHEKLETTQIYTRVAIGH---- 311

Query: 310 MMEIYDQTHPS 320
           + +++++THP+
Sbjct: 312 LKQVHEKTHPA 322


>gi|255692294|ref|ZP_05415969.1| phage-related integrase [Bacteroides finegoldii DSM 17565]
 gi|260622027|gb|EEX44898.1| phage-related integrase [Bacteroides finegoldii DSM 17565]
          Length = 341

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 77/305 (25%), Positives = 133/305 (43%), Gaps = 16/305 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR- 79
           + + L  ERG+S  T++SY       L FL      K     +  ++   +  F+   + 
Sbjct: 14  FTEYLIGERGVSPNTIRSYSESFSLLLNFLDEQVNIKADNLRLEHITRKTVLNFLDWLQD 73

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR---ALNEKQALT 136
           T+K  + +  + L+ ++SF  Y++   +        + ++K      R    L+      
Sbjct: 74  TKKSSNATRNQRLAALRSFCTYMQYEDVKRLEQWQEILSIKVKTHEKRSVNYLSIDGIKL 133

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQGKGD 195
           L+  + ++T    +     + A++ LLY  G R+ E + LTP ++  ++   + + GKG 
Sbjct: 134 LLAQIPINTKKGRR-----DLALISLLYDSGARVQELIDLTPASLKLEKPCHVTLFGKGR 188

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RIVPL       +  Y +    DL+   Q PLF    G+ L        +     +  
Sbjct: 189 KKRIVPLQDEQVNLLRSYMEENRLDLSGFNQRPLFFNSCGRKLTNSGISYILNNYINHAR 248

Query: 256 L------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           +      P   + HTLRHS A HLL  G +L  I+ ILGH  + TT+IY   +SK   + 
Sbjct: 249 IQDPELIPEKISPHTLRHSKAMHLLQAGVNLVYIRDILGHVSIQTTEIYARADSKQKREA 308

Query: 310 MMEIY 314
           +   Y
Sbjct: 309 LESAY 313


>gi|313148284|ref|ZP_07810477.1| phage integrase [Bacteroides fragilis 3_1_12]
 gi|313137051|gb|EFR54411.1| phage integrase [Bacteroides fragilis 3_1_12]
          Length = 337

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 127/308 (41%), Gaps = 26/308 (8%)

Query: 18  RQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
            + +L + L   R LS  TL+SY    R  + F+A   ++++    +  ++   +  F+ 
Sbjct: 13  IRRFLCEYLTNIRNLSANTLKSYRDAIRLLMPFVAKCVKKEVDKILLADITDARVVDFLD 72

Query: 77  KR-RTQKIGDRSLKRSLSGIKSFLKY---LKKRKITTESNILNMRNLKKSNSLPRALNEK 132
              R +    ++    L+ + SF KY        I    NI  +   K   +L   L ++
Sbjct: 73  SLERNRSCSIKTRNLRLAAVCSFAKYISVNCPEHIEWSRNIRIIPVKKTERTLITYLEKE 132

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS----TL 188
           +   L+D        +      R+ A+L  LY  G R  EA +L  +++   +      +
Sbjct: 133 EMNALLD-----APDKNTSQGWRDYALLLFLYNTGARADEAATLLIRDLSLPKRKGLAVV 187

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            I GKG+K R  PL    R A+         D        +F    G+P+        + 
Sbjct: 188 SITGKGNKTRRCPLWQHTRDALSSIIKNRTKD------EYVFLNRFGQPITRFGIYEMVT 241

Query: 249 QLRRYLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +    +            + HT+RH+ ATHLL +G D+ +I++ LGH  ++TT IY  VN
Sbjct: 242 RYAEKIKELIPTIKKKRVSPHTIRHTTATHLLQSGVDINTIRAWLGHVSINTTNIYAEVN 301

Query: 303 SKNGGDWM 310
            +     +
Sbjct: 302 MEMKAKAL 309


>gi|311030547|ref|ZP_07708637.1| hypothetical protein Bm3-1_08391 [Bacillus sp. m3-13]
          Length = 280

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 70/303 (23%), Positives = 135/303 (44%), Gaps = 27/303 (8%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +  + +  + +IE G S LTL++Y     Q+ + L ++ + ++ I     L+  +++ 
Sbjct: 3   LSQVWEKYQLDKKIE-GYSPLTLKTY---CFQYNMLLRYFGDIELNI-----LTTDQLKE 53

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++ K  T  +   SL   +  I+S  K+        ++    ++  K    +P+ L E +
Sbjct: 54  YLIKGSTH-LKPSSLGHRVRCIRSLFKWANDEGFIKKNPAAKLKEPKLGKRIPKFLTELE 112

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L ++            ++  +A+    Y  G RI E + L   +I    +++ + GK
Sbjct: 113 IEHLRESC----------QNSMENALFEFFYSTGCRIGEVVKLNRDDINFASNSVIVHGK 162

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK--PLNPGVFQRYIRQLR 251
           GDK R V         +  Y      D   +    LF   R     ++  + +  I+++ 
Sbjct: 163 GDKEREVYFNTRCSLWLKRYL-----DERDDQDQSLFITERRPKRRMSIDLIRYIIKRIS 217

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+  +   H LRHS+ATH+++NG  L  IQS+LGH +  TT+IY  ++ K   D   
Sbjct: 218 SGAGIKKNIHPHQLRHSYATHMINNGAPLEVIQSLLGHEKSETTRIYAQLSGKLRKDLYS 277

Query: 312 EIY 314
           + +
Sbjct: 278 KYF 280


>gi|198275042|ref|ZP_03207574.1| hypothetical protein BACPLE_01201 [Bacteroides plebeius DSM 17135]
 gi|198272489|gb|EDY96758.1| hypothetical protein BACPLE_01201 [Bacteroides plebeius DSM 17135]
          Length = 372

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 68/287 (23%), Positives = 124/287 (43%), Gaps = 30/287 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L+  R  S  T++ Y    R F                I  ++  EI  ++   
Sbjct: 94  EGYLEKLQQVR-YSDHTVRVYTSYFRDFQQHFEGRK--------IETVTPGEINDYLLYL 144

Query: 79  -RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + I      + ++ IK + + +  ++         +   K+  +LP  L++++   +
Sbjct: 145 IHEKNISSCQQNQRINAIKFYYEKVLGQERR----CYKVNRAKREKTLPDVLSKEEIKKI 200

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDK 196
           +D             D R   +  +LY  GLRISE L L P +I + +S +R++ GKG K
Sbjct: 201 LDA---------TVTDLRFFCMFSILYSAGLRISELLELKPGDINESRSLIRVRQGKGKK 251

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R   L   + K + EY  L         ++ LF    G+P    +  + ++   R  G+
Sbjct: 252 DRYTLLSKPLMKKLTEYNRLY------KPKVWLFEHRPGEPFTESIVSKRLKAAAREAGI 305

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
                 H LRHSFA HLL  G D++ ++ ++GH  + TT+ Y ++  
Sbjct: 306 TKRIYPHLLRHSFAPHLLEQGTDIKIVKELMGHNNIKTTERYVHIAD 352


>gi|310813961|gb|ADP30788.1| IntI1 [Serratia rubidaea]
          Length = 313

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 76/332 (22%), Positives = 136/332 (40%), Gaps = 64/332 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           SFAT  L +G D+R++Q +LGH  +STT IYT
Sbjct: 282 SFATAFLRSGYDIRTVQDLLGHSDVSTTMIYT 313


>gi|327438335|dbj|BAK14700.1| integrase [Solibacillus silvestris StLB046]
          Length = 280

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 65/301 (21%), Positives = 128/301 (42%), Gaps = 23/301 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +  + + Q+ +IE G S LTL++Y       L F         + + +++        
Sbjct: 3   LSEAWKKYQQDKKIE-GYSTLTLKTYCFQYNLLLRFFGDIDMNGFSTEKLKE-------- 53

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++ +     +   SL   +  +KS  ++  +     ++    ++  K    +P+ L+E +
Sbjct: 54  YLIQ-SGNHLKPSSLGHRIRCVKSLFRWSHEEGYILKNPAAKLKEPKLGKRIPKFLSELE 112

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L +       +          A+   +Y  G RI E + L   +I    +++ +QGK
Sbjct: 113 IEHLREACQTTMEN----------ALFEFMYSTGCRIGEVVKLDRHDIDFRTNSVIVQGK 162

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GDK R V         +  Y D    D   +  L +      + ++    +  I+++   
Sbjct: 163 GDKEREVYFNTRCSIWLKRYLDEREDD---DPCLFITDRKPKRRMSIDNLRYIIKRVSNR 219

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+      H LRHS+ATH+++NG  +  IQS+LGH +  TT+IY  ++ K   D+  + 
Sbjct: 220 AGIKKCIHPHQLRHSYATHMINNGAPIDVIQSLLGHEKSETTKIYAQLSGKIRQDYYSKY 279

Query: 314 Y 314
           +
Sbjct: 280 F 280


>gi|115345577|ref|YP_771759.1| tyrosine recombinase [Roseobacter denitrificans OCh 114]
 gi|115292898|gb|ABI93351.1| tyrosine recombinase [Roseobacter denitrificans OCh 114]
          Length = 302

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 136/296 (45%), Gaps = 11/296 (3%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            ++     ERG+   TL++Y  D R F  F   Y            LS  +I A+ S  R
Sbjct: 8   AFVTACRDERGVGNHTLRAYAQDLRTFARFTKEYHL-------ADPLSKDDILAYHSHLR 60

Query: 80  TQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTL 137
            +      S++R L  +KS+  +   R     S   ++R +++    LPR ++ +    +
Sbjct: 61  DELHAKPASIERRLVTLKSYFAWRADRNSALPSPFADVRISVRIPRRLPRPVDRETLKAV 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           + +    T  +    +     ++ LL   GLRISE  +L   ++  D S + ++GKG+K 
Sbjct: 121 LQSETGPTGAQPADQEVT-ILMIKLLIVTGLRISELTTLKICDVTADASQMIVRGKGNKE 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R+V +  +  + +   Y       + +++ PLF    G+ L    F++ +R L   LG+ 
Sbjct: 180 RMVFVPNAELQEMFRRYC-ADRVRHDSLKSPLFLNAVGRRLRSQTFRKRLRVLSHRLGIT 238

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              T H  RHS AT L+  G D+R +Q++LGH  L TT+IY  V++      +   
Sbjct: 239 PHLTPHRFRHSAATLLIEEGTDIRMVQALLGHASLRTTEIYVRVSNHALRRALERA 294


>gi|255010479|ref|ZP_05282605.1| phage integrase [Bacteroides fragilis 3_1_12]
          Length = 338

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 127/308 (41%), Gaps = 26/308 (8%)

Query: 18  RQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
            + +L + L   R LS  TL+SY    R  + F+A   ++++    +  ++   +  F+ 
Sbjct: 14  IRRFLCEYLTNIRNLSANTLKSYRDAIRLLMPFVAKCVKKEVDKILLADITDARVVDFLD 73

Query: 77  KR-RTQKIGDRSLKRSLSGIKSFLKY---LKKRKITTESNILNMRNLKKSNSLPRALNEK 132
              R +    ++    L+ + SF KY        I    NI  +   K   +L   L ++
Sbjct: 74  SLERNRSCSIKTRNLRLAAVCSFAKYISVNCPEHIEWSRNIRIIPVKKTERTLITYLEKE 133

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS----TL 188
           +   L+D        +      R+ A+L  LY  G R  EA +L  +++   +      +
Sbjct: 134 EMNALLD-----APDKNTSQGWRDYALLLFLYNTGARADEAATLLIRDLSLPKRKGLAVV 188

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            I GKG+K R  PL    R A+         D        +F    G+P+        + 
Sbjct: 189 SITGKGNKTRRCPLWQHTRDALSSIIKNRTKD------EYVFLNRFGQPITRFGIYEMVT 242

Query: 249 QLRRYLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +    +            + HT+RH+ ATHLL +G D+ +I++ LGH  ++TT IY  VN
Sbjct: 243 RYAEKIKELIPTIKKKRVSPHTIRHTTATHLLQSGVDINTIRAWLGHVSINTTNIYAEVN 302

Query: 303 SKNGGDWM 310
            +     +
Sbjct: 303 MEMKAKAL 310


>gi|170757708|ref|YP_001782133.1| phage integrase [Clostridium botulinum B1 str. Okra]
 gi|169122920|gb|ACA46756.1| phage integrase [Clostridium botulinum B1 str. Okra]
          Length = 331

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 68/313 (21%), Positives = 137/313 (43%), Gaps = 27/313 (8%)

Query: 4   NNLPE---IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           N LP+   +++ ++ ++ Q +L + +++ GLS  TL++Y+ +   F  +L          
Sbjct: 42  NILPQEKALMTSDVEEKLQIYLASKKLD-GLSLETLKNYQYNLAIFADYLR--------- 91

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           + +  ++  ++R F+   R + +   S+   +S +KSF  +L+  +   ++    ++  K
Sbjct: 92  KPLATINTMDLRMFLGA-RCKNMKPSSMNGQISILKSFFGWLEAEEYIPKNPAAKLKQTK 150

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +   + + L E++A  L                    A+   L   G R+ E   +   N
Sbjct: 151 EPKRVRKPLTEEEAELLRQACETDRQ----------KALTEFLISTGCRLDEVFKVNKDN 200

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I   + +L + GKGDK R V      +  + +Y      D   +  L +        L  
Sbjct: 201 INWHEMSLFVVGKGDKERKVYFNTKAKILLKKYLFSREDD---DPALFVTSKRPYHRLGK 257

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              QR  +++    G+  S   H  RHSFAT+ +++G  +  IQ ++GH   +TTQIY  
Sbjct: 258 RSIQREFKKIANMAGIEKSIHPHLFRHSFATYKINSGMPMPIIQHLMGHESPATTQIYAQ 317

Query: 301 VNSKNGGDWMMEI 313
           ++ +       +I
Sbjct: 318 LSEETVKYEYKKI 330


>gi|126668752|ref|ZP_01739701.1| putative integrase [Marinobacter sp. ELB17]
 gi|126626789|gb|EAZ97437.1| putative integrase [Marinobacter sp. ELB17]
          Length = 332

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 74/334 (22%), Positives = 129/334 (38%), Gaps = 27/334 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M    LP ++        + ++  L  +R +S  T+ SY    R  L+F      +  + 
Sbjct: 1   MNTPTLPALLE-------RFFIDRLMRQRHVSANTIASYRDTFRLPLVFTQKQLGKPPSS 53

Query: 61  QTIRQLSYTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI---LNM 116
             +  +  T + AF+      + I  R+    L+ I+SF +++   +    + I   L +
Sbjct: 54  LNLEDIDATLVSAFLEDLEVNRSISARTRNLRLTAIRSFFRFVSYEEPAHSAQIQRVLAV 113

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
            + ++   +   L   +   L+         ++ WI  R+  +L L    GLR+SE   L
Sbjct: 114 PDKRQDRRIVHFLARPEIEALL-----AAPDQSTWIGRRDHTLLLLAVQTGLRLSELTGL 168

Query: 177 TPQNIMDDQS-TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
              +++      +   GKG K R  PL  +V +AI E+      +        LF   +G
Sbjct: 169 DRASVVLGSGAHVHCLGKGRKERCTPLTRTVSRAIQEWLK----EPARCDSKALFSTRQG 224

Query: 236 KPLNPGVFQRYIRQLRRYLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           + L+    Q  +                   T H LRHS A  LL  G D   I   LGH
Sbjct: 225 RRLSADAVQYLVANYADITRQHCPSLKQKRITPHVLRHSAAMELLQAGVDCSVIALWLGH 284

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
             + TTQ+Y + +       + +I    H  I +
Sbjct: 285 ESVETTQVYLHAHMALKEAALAKIDPLGHAGIKR 318


>gi|150389215|ref|YP_001319264.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
 gi|149949077|gb|ABR47605.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
          Length = 354

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 75/280 (26%), Positives = 128/280 (45%), Gaps = 32/280 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRS 87
           +G S  T +SY    ++FL F+    E          L+  ++  ++      Q+     
Sbjct: 91  KGYSPKTKKSYIGHVKRFLGFINNKPE---------VLTKQDVEKYMYHLLNVQENSHAF 141

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++LS IK + ++  K+       + ++   KK  +LP  L++++ L+++D+V      
Sbjct: 142 ANQALSAIKFYYQHSLKKDKV----LYDLPRPKKEKTLPNILSQREVLSILDSV------ 191

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
                + ++ +IL L Y  GLRI E + L   +I  D+  + ++ GKG K R   L    
Sbjct: 192 ----NNIKHKSILLLTYSAGLRIGEVVRLKVGDIDSDRMLIHVRQGKGRKDRYTILSEVA 247

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              + +Y  +         +  LF G +    L     Q+      +   +    + H+L
Sbjct: 248 LSTLRKYAMI------EKPKDWLFPGGKENCFLTERSVQKIFSVACKRAKVKKHASVHSL 301

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           RHSFATHLL  G DLR IQ +LGH    TT+IYT+V+  N
Sbjct: 302 RHSFATHLLEGGTDLRYIQELLGHSSSKTTEIYTHVSEAN 341


>gi|189459539|ref|ZP_03008324.1| hypothetical protein BACCOP_00163 [Bacteroides coprocola DSM 17136]
 gi|189465731|ref|ZP_03014516.1| hypothetical protein BACINT_02092 [Bacteroides intestinalis DSM
           17393]
 gi|332877255|ref|ZP_08445004.1| integron integrase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|189433791|gb|EDV02776.1| hypothetical protein BACCOP_00163 [Bacteroides coprocola DSM 17136]
 gi|189433995|gb|EDV02980.1| hypothetical protein BACINT_02092 [Bacteroides intestinalis DSM
           17393]
 gi|332684845|gb|EGJ57693.1| integron integrase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 372

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 125/287 (43%), Gaps = 30/287 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L+  R  S  T++ Y    R F                I  ++  EI  ++   
Sbjct: 94  EGYLEKLQQVR-YSDHTVRVYTSYFRDFQQHFEGRK--------IETVTPGEINDYLLYL 144

Query: 79  -RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + I      + ++ IK + + +  ++         +   K+  +LP  L++++   +
Sbjct: 145 IHEKNISSCQQNQRINAIKFYYEKVLGQERR----CYKVNRAKREKTLPDVLSKEEIKKI 200

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDK 196
           +D             D R   +  +LY  GLRISE L L P +I + +S +R++ GKG K
Sbjct: 201 LDA---------TVTDLRFFCMFSILYSAGLRISELLELKPGDINESRSLIRVRQGKGKK 251

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R   L   + K + EY  L         ++ LF    G+P    +  + ++   R  G+
Sbjct: 252 DRYTLLSKPLMKKLTEYNRLY------KPKVWLFEHRPGEPFTESIVSKRLKAAAREAGI 305

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
                 H LRHSFATHLL  G D++ ++ ++GH  + TT+ Y ++  
Sbjct: 306 TKRIYPHLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHIAD 352


>gi|319945231|ref|ZP_08019493.1| tyrosine recombinase XerC [Lautropia mirabilis ATCC 51599]
 gi|319741801|gb|EFV94226.1| tyrosine recombinase XerC [Lautropia mirabilis ATCC 51599]
          Length = 332

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 76/280 (27%), Positives = 132/280 (47%), Gaps = 23/280 (8%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
                +   +IR +++      +   SL R LS  + F   L +      + +  +R  K
Sbjct: 5   TDWAAVKEADIRRWVAAAARDGLSPASLARRLSAWRGFFDALAEDGRILANPVQGVRPPK 64

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +   LP+AL   QA+ LVD  +     E  +  +R+ A+  L Y  GLR+SE  +L  + 
Sbjct: 65  RPRRLPKALPVDQAVQLVDGPVEA---EQAFTASRDRAMAELFYSSGLRLSELTALDHRW 121

Query: 181 I-------------MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-- 225
           +                 + +++ GKG K R VP+  +   A+  + ++    L  +   
Sbjct: 122 LQASGDGARSSAWLDRPAAEVQVLGKGGKRRTVPVGRAALAALDAWLEIRGEWLAAHPAA 181

Query: 226 -QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
              PLF  ++G+ L+    Q  +  L +  GLP     H LRHSFA+H+L + GDLR++Q
Sbjct: 182 DTAPLFLSLQGRRLSNRSVQLRMDALAQRRGLPQHVHPHVLRHSFASHMLQSSGDLRAVQ 241

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
            +LGH  + TTQ+YT ++ ++    +  +YD  HP   ++
Sbjct: 242 ELLGHASIGTTQVYTALDFQH----LAAVYDAAHPRARRQ 277


>gi|288947732|ref|YP_003445115.1| integrase family protein [Allochromatium vinosum DSM 180]
 gi|288898248|gb|ADC64083.1| integrase family protein [Allochromatium vinosum DSM 180]
          Length = 308

 Score =  185 bits (470), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 79/319 (24%), Positives = 145/319 (45%), Gaps = 25/319 (7%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++       R++++ +L   RG ++ T   Y  D   +  +L        +    R+ S+
Sbjct: 1   MIDKTFWDVRKDFMSHLRYTRGCAESTCYGYHSDLGIWGRWLDE------SEHDWRECSH 54

Query: 69  TEIRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
            E+  +I+ + R +K+    + R +S + +F K+  K K+     +      K    +P 
Sbjct: 55  IEVEQWINVQTRERKVKPHIISRRVSALSTFYKWALKSKLVETDPVYLAEKPKTPQRIPI 114

Query: 128 ALNEKQ----------ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
            L   +             L +N+  +T      I  R   +  LL   GLRISEAL+L 
Sbjct: 115 WLERDEQDRLKEALRDISDLPENIFGNTPETIMLIRQRYQVLFDLLQNSGLRISEALALR 174

Query: 178 PQNIMDDQ---STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
            +++        ++R+ GKG+K R+VPL  +  + +  +    P D     +    +   
Sbjct: 175 VRDVRVTGQIARSVRVIGKGNKERMVPLPVAFGEELAAWISDLPSD-----EFIFAKESG 229

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G P  P   + Y+ ++ +  GL    T H LRH++AT LL +G +L  IQ++LGH  L+T
Sbjct: 230 GDPPKPRTVRDYLSKIIKKAGLDKKITPHKLRHTYATRLLESGAELIDIQALLGHANLAT 289

Query: 295 TQIYTNVNSKNGGDWMMEI 313
           TQ+YT+V+       + ++
Sbjct: 290 TQMYTHVSDDRMASVVAKL 308


>gi|163855809|ref|YP_001630107.1| putative integrase/recombinase [Bordetella petrii DSM 12804]
 gi|163259537|emb|CAP41838.1| putative integrase/recombinase [Bordetella petrii]
          Length = 336

 Score =  185 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 71/322 (22%), Positives = 126/322 (39%), Gaps = 25/322 (7%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+   LP  +        + +L+ L   +GL   T++SY    R FLIF+A      ++ 
Sbjct: 1   MKQQGLPSAI-------HRYFLEYLPRHKGLQSSTIRSYRDSLRLFLIFVADANRIGVSE 53

Query: 61  QTIRQLSYTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKY---LKKRKITTESNILNM 116
                L Y  ++ F++     +     +  + L+ +  F +Y        +   + +  +
Sbjct: 54  LAFEHLGYAAVQDFLNNMEVKRGNAISTRNQRLTALHMFYEYLGRTTPEMLPASAKVAAI 113

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              +      + L   +   +   +  H       +  R+ A+L LLY  G R+SE   L
Sbjct: 114 PMKRCPLPEMKFLARDEVEAMFALIPAH-----DRLSQRDRALLMLLYNTGARVSEVAQL 168

Query: 177 TPQNIMDDQ-STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
               +     + +R+ GKG K R  PL     KA+    D  P  L  +   P+F G+  
Sbjct: 169 KVGQLDLQSPARVRLLGKGSKWRTCPLWSQTAKALQSMLDERPERLPPDA--PVFVGVAQ 226

Query: 236 KPLNPGVFQRYIRQLRRY------LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           + +      + IR   +          P   T H  RH+ A HLL +G ++  I+  LGH
Sbjct: 227 EGMTRFGIYKRIRHYAKLWEASVTASSPTHVTPHVFRHTTAVHLLESGVEVNVIRGWLGH 286

Query: 290 FRLSTTQIYTNVNSKNGGDWMM 311
             L TT  Y  +  +   + + 
Sbjct: 287 VNLETTNRYAEITIRMKAEALK 308


>gi|325661577|ref|ZP_08150201.1| hypothetical protein HMPREF0490_00935 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472104|gb|EGC75318.1| hypothetical protein HMPREF0490_00935 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 354

 Score =  185 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 65/307 (21%), Positives = 126/307 (41%), Gaps = 25/307 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTE-------EKITIQTIRQLSYTEIRAFISKRRTQK-- 82
           S  T  SY  D R F  FL             + T++ + QLS  +I  ++   +  +  
Sbjct: 43  SAKTRISYAYDIRTFFYFLVECNPLYRDRSTTQFTLEDLDQLSSVDIEEYLEYLKVYESS 102

Query: 83  ------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                   ++ L R +S ++SF  Y  KR+   ++  L +   K        L+  +   
Sbjct: 103 ENKQIINSEQGLARKMSALRSFYGYFFKRQAIEKNPTLLVDMPKLHEKAIIRLDTDEVAI 162

Query: 137 LVDNVLLHTSHET-------KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           L+D +    S  T       +    R+ AI+ LL G G+R+SE + L   ++    + ++
Sbjct: 163 LLDYIETCGSQLTGQKKVYYEKTKYRDLAIITLLLGTGIRVSECVGLDINDVDFKNNGVK 222

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYI 247
           +  KG    +V     V KA+ +Y +L   ++    + +  LF   + K +     +  +
Sbjct: 223 VTRKGGNEMVVYFGREVEKALRDYLELTRKNITPLPDHENALFLSTQRKRMGVQAVENMV 282

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNG 306
           ++  + +      T H LR ++ T L    GD+  +  +LGH  ++TT + Y  ++    
Sbjct: 283 KKYAKQVTPNKKITPHKLRSTYGTSLYKETGDIYLVADVLGHKDVNTTKKHYAAIDESRR 342

Query: 307 GDWMMEI 313
                 +
Sbjct: 343 RQAASAV 349


>gi|332076314|gb|EGI86780.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus
           pneumoniae GA41301]
          Length = 298

 Score =  185 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 83/296 (28%), Positives = 129/296 (43%), Gaps = 26/296 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L   +  + LS  T+++Y+ D  QF                     Y  + ++I K   
Sbjct: 9   YLDYCKTHKRLSSHTIRAYKNDLMQFYNS-----------------DYDNVESYIEKLTR 51

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQA----L 135
             I   +L+R ++ +K F  YLK + I  E+    +R   +    LP+ +         +
Sbjct: 52  SNIKTNTLRRKIACMKVFYNYLKYQNIIEENPFNQLRFQFRTEKVLPKTIPYDILKSIFI 111

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L   V++  +   K    RN  I+ LL   G+RISE   +  ++I     TL I GKG 
Sbjct: 112 YLEQKVIVSKTDYQKQHAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLHIIGKGK 171

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYL 254
           K RI+ L       +LE Y     +        LF G    KPL+    +  I+++    
Sbjct: 172 KERILFLGDQKTFNLLETYINKTRN---ESNDFLFPGKHSLKPLSEQSVRLVIKRIVEQN 228

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               + T H  RHSFAT LL +  D+R IQ ILGH  +S TQIYT+V+     + +
Sbjct: 229 NFSRTITPHMFRHSFATMLLDSDVDIRYIQQILGHSSISITQIYTHVSHSKQKEIL 284


>gi|315924314|ref|ZP_07920537.1| tyrosine recombinase XerC [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622385|gb|EFV02343.1| tyrosine recombinase XerC [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 355

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 82/337 (24%), Positives = 142/337 (42%), Gaps = 35/337 (10%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE----- 56
           +  N P+I S        +    L   +G S  T++SY+ D  QF  FL     +     
Sbjct: 19  DKTNAPKIPSKRQNAILTDLADYLISAKGYSLNTIRSYQNDLIQFFRFLRRRFGQVDRDC 78

Query: 57  --------KITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKY-LKKRK 106
                    I    +  +   +I AF+     Q   G+ + KR  + I++   Y     +
Sbjct: 79  PFEAIDISPIDFSLLSAVQLADIYAFLGYASVQRGNGNTTRKRKTAAIRALYHYLTVVLQ 138

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
           +       N+   K     P  L   +A++L++ +              + AI+ L   C
Sbjct: 139 LDMSDPTQNLEVPKIKQRDPIYLTLDEAMSLLNAIDGRNKER-------DLAIVTLFLNC 191

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF------- 219
           G+R+SE  +L  ++I D+  TL I GKG+K R V L  +   A+  YY +          
Sbjct: 192 GMRLSELTNLRLKDIQDE--TLHIVGKGNKERDVILNDACVNALEAYYPIRKQQIERIEA 249

Query: 220 --DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSN 276
             D  + +   LF   RG+ ++  + +  + +     GL     T H LRH+ AT +   
Sbjct: 250 QSDKVVKVDDHLFLSSRGRGISNRMVEGMVHKYILKAGLDANKITVHKLRHTAATLMYKY 309

Query: 277 G-GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           G  D+R++Q +LGH  +STT+IYT++   +    + +
Sbjct: 310 GQVDIRTLQKVLGHENVSTTEIYTHIEDDDVRAALYK 346


>gi|153821954|ref|ZP_01974621.1| DNA integrase IntI1 [Vibrio cholerae B33]
 gi|126520493|gb|EAZ77716.1| DNA integrase IntI1 [Vibrio cholerae B33]
          Length = 311

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 73/310 (23%), Positives = 127/310 (40%), Gaps = 60/310 (19%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSL 88
             S  T Q+Y    R F+ F          ++    L  +E+ AF+S     +K+   + 
Sbjct: 2   HYSLPTEQAYVHWVRAFIRFH--------GVRHPATLGSSEVEAFLSWLANERKVSVSTH 53

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           +++L+ +  F   +    +     +  +   + S  LP  L   + + ++          
Sbjct: 54  RQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRRLPVVLTPDEVVRIL---------- 100

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVR 207
             +++  +     LLYG G+RISE L L  +++  D  T+ ++ GKG K R + L  S+ 
Sbjct: 101 -GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLA 159

Query: 208 KAILE------------------------------------YYDLCPFDLNLNIQLPLFR 231
            ++ E                                    +     F  + +   P   
Sbjct: 160 PSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSG 219

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
            +R   +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  
Sbjct: 220 VVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSD 279

Query: 292 LSTTQIYTNV 301
           +STT IYT+V
Sbjct: 280 VSTTMIYTHV 289


>gi|91790630|ref|YP_551582.1| phage integrase [Polaromonas sp. JS666]
 gi|91699855|gb|ABE46684.1| phage integrase [Polaromonas sp. JS666]
          Length = 291

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 132/295 (44%), Gaps = 26/295 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ  L ++ + R L   T  SY    R+   FL          ++    +  ++R F   
Sbjct: 12  RQRMLDDMRL-RKLEDKTQSSYIRAVRKLAGFLR---------RSPDTATVEDLRRFQLH 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q     +L  +++G+K F +   +R       +  M++++    LP  L+ ++   L
Sbjct: 62  LVDQGTSPITLNATITGLKFFFEVTLER----ADLMARMQSVRVPQKLPVVLSPQEVARL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
           +              + ++   L + YG GLR SE ++L   +I   + TLR+ QGKG K
Sbjct: 118 IAAT----------ANLKHQTALSVAYGAGLRASEVIALKVGDIDSQRMTLRVEQGKGRK 167

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLG 255
            R   L P + + +  ++ +      +     LF G+   +PL      R I    +   
Sbjct: 168 DRYAMLAPVLLQRLRAWWRVGHAQGKMLPGGWLFPGLDPVQPLTTRQLNRAIHAAAQDAK 227

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           +    + HTLRHSFATHLL    D+R IQ +LGH +L TT +YT+V ++   + +
Sbjct: 228 IDKRVSMHTLRHSFATHLLEQKVDIRVIQVLLGHKKLETTSMYTHVATEVLREVI 282


>gi|300723768|ref|YP_003713075.1| int (fragment) [Xenorhabdus nematophila ATCC 19061]
 gi|297630292|emb|CBJ90943.1| Int (fragment) [Xenorhabdus nematophila ATCC 19061]
          Length = 333

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 82/323 (25%), Positives = 146/323 (45%), Gaps = 24/323 (7%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + S  L +  Q++L +L+  R  ++ T   Y  + R+F+ +      ++  I T +Q+S+
Sbjct: 1   MASLTLRQHMQHFLDHLDALR-YTRETRAHYRSNLREFVRWC-----DERGITTAQQVSF 54

Query: 69  TEIRAFISKRRTQK------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
            ++ ++      QK      I   ++ + L+ ++   ++L KR+    +    +   ++ 
Sbjct: 55  PQLESWQQHMVAQKNRHGRPIAASTVIKKLTSVRHLFRWLVKRRHLRYNPARELALPRRE 114

Query: 123 NSLP-RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
             LP   LNE +   ++       +     +  R+ AIL  L+  G+R SE   L    +
Sbjct: 115 RRLPWGMLNEPETRRVL-----AMTGSDNPLSVRDRAILETLWSSGIRRSELKRLQLSEL 169

Query: 182 MDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLN 239
                 L ++ GKG + R+VPL  S R  +  Y + + P  +       LF   +G  L 
Sbjct: 170 DLAGGMLFVRQGKGRQDRVVPLGESARHWVQRYLNDVRPRLVWAKDPGYLFLSQQGSALA 229

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            G   + +R       +      H  RH  AT +L NG D R IQ+ILGH  L +TQIYT
Sbjct: 230 EGTLTQIVRNALHRADIDKPGGCHLFRHGMATQMLKNGADTRHIQAILGHASLESTQIYT 289

Query: 300 NVNSKNGGDWMMEIYDQTHPSIT 322
            V   +    + E+++QTHP+  
Sbjct: 290 RVAIGH----LKEVHNQTHPAER 308


>gi|167754200|ref|ZP_02426327.1| hypothetical protein ALIPUT_02493 [Alistipes putredinis DSM 17216]
 gi|167658825|gb|EDS02955.1| hypothetical protein ALIPUT_02493 [Alistipes putredinis DSM 17216]
          Length = 372

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 126/287 (43%), Gaps = 30/287 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L+  R  S  T++ Y    R F  +             I  ++  EI  ++   
Sbjct: 94  EGYLEKLQQVR-YSDHTVRVYTSYFRDFQQYFEGRK--------IETVTPGEINDYLLYL 144

Query: 79  -RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + I      + ++ IK + + +  ++         +   K+  +LP  L++++   +
Sbjct: 145 IHEKNISSCQQNQRINAIKFYYEKVLGQERR----CYKVNRAKREKTLPDVLSKEEIKKI 200

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDK 196
           +D             D R   +  +LY  GLRISE L L P +I + +S +R++ GKG K
Sbjct: 201 LD---------VTVTDLRFFCMFSILYSAGLRISELLELKPGDINEPRSLIRVRQGKGKK 251

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R   L   + K + EY  L         ++ LF    G+P    +  + ++   R  G+
Sbjct: 252 DRYTLLSKPLMKKLTEYNRLY------KPKVWLFEHRPGEPFTESIVSKRLKAAAREAGI 305

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
                 H LRHSFATHLL  G D++ ++ ++GH  + TT+ Y ++  
Sbjct: 306 TKRIYPHLLRHSFATHLLEQGIDIKIVKELMGHNNIKTTERYVHIAD 352


>gi|159046171|ref|YP_001541843.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|159046203|ref|YP_001541875.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|157913930|gb|ABV95362.1| phage integrase [Dinoroseobacter shibae DFL 12]
 gi|157913962|gb|ABV95394.1| phage integrase [Dinoroseobacter shibae DFL 12]
          Length = 290

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 86/310 (27%), Positives = 130/310 (41%), Gaps = 38/310 (12%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M   ++P +        R+ +++++ I +GL   T   Y    R F  FL          
Sbjct: 1   MSEQHIPPL--------RRRFIEDMRI-KGLQPKTQTMYLRAMRDFTGFLGH-------- 43

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            +    +  E+RAF    + + +G  +    L+ +  F      R         +MR  +
Sbjct: 44  -SPDSATPEELRAFQLDMKEKGVGAPTFNNRLTVLSFFYATTCPRPEMK----RHMRYQR 98

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
            +  +P  L+ ++   +++               R  A   + YG GLR SE   L   +
Sbjct: 99  AAKKIPVVLSAEEVTRILEA--------APGPGLRYRAAFSVAYGGGLRASEVTHLKIGD 150

Query: 181 IMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPL 238
           I  D+  +RI QGKG K R V L PS+   + +YY              LF G  R  P+
Sbjct: 151 IDSDRMLIRIDQGKGRKDRHVMLSPSLLVLLRDYYREA------RPAGWLFPGRNRVDPI 204

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +   F R       +  +    + HTLRHSFATHLL  G D+R IQ +LGH +L TT IY
Sbjct: 205 STRQFNRAFGVACDFAEIKKRVSPHTLRHSFATHLLEGGTDIRVIQVLLGHAKLETTTIY 264

Query: 299 TNVNSKNGGD 308
           T V  K   D
Sbjct: 265 TKVAIKTIRD 274


>gi|307705945|ref|ZP_07642775.1| tyrosine recombinase xerD [Streptococcus mitis SK597]
 gi|307620500|gb|EFN99606.1| tyrosine recombinase xerD [Streptococcus mitis SK597]
          Length = 295

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 129/296 (43%), Gaps = 26/296 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L   +  + LS  T+++Y+ D  QF                     Y  + ++I +   
Sbjct: 9   YLDYCKTHKRLSSHTIRAYKNDLMQFYNS-----------------DYDNVESYIEQLTR 51

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQA----L 135
             I   +L+R ++ +K F  YLK + I  E+    +R   +    LP+ +         +
Sbjct: 52  SNIKTNTLRRKIACMKVFYNYLKYQNIIEENPFNQLRFQFRTEKVLPKTIPYDILKSIFI 111

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L   V++  +   K    RN  I+ LL   G+RISE   +  ++I     TL I GKG 
Sbjct: 112 YLEQKVIVSKTDYQKQHAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLHIIGKGK 171

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYL 254
           K RI+ L       +LE Y     +        LF G    KPL+    +  I+++    
Sbjct: 172 KERILFLGDQKTFNLLETYINKTRN---ESNDFLFPGKHSLKPLSEQSVRLVIKRIVEQN 228

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               + T H  RHSFAT LL +  D+R IQ ILGH  +S TQIYT+V+     + +
Sbjct: 229 NFSRTITPHMFRHSFATMLLDSDVDIRYIQQILGHSSISITQIYTHVSHSKQKEIL 284


>gi|305666658|ref|YP_003862945.1| tyrosine type site-specific recombinase [Maribacter sp. HTCC2170]
 gi|88707463|gb|EAQ99707.1| tyrosine type site-specific recombinase [Maribacter sp. HTCC2170]
          Length = 363

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 73/286 (25%), Positives = 136/286 (47%), Gaps = 30/286 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  LE++R  +  T+++Y      F+    +        + +  ++ ++IRAF+ K 
Sbjct: 96  EEYLLKLELKR-YANSTVRTYVSFFELFINHYKY--------KELNAINESDIRAFLQKL 146

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + + +  L +S++ IK + + +        +    +   +K + LP+ +++ + LT++
Sbjct: 147 IHRNVSNSYLNQSINAIKFYYEVVLGM----PNRFYEIERPRKESKLPKVISKDEILTII 202

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKI 197
           +N            + ++  I+ LLYG GLR SE L+L   ++   +  + +   KG+K 
Sbjct: 203 ENT----------NNIKHRCIVQLLYGSGLRRSELLNLKINDVDSKRMLIHVSDSKGNKD 252

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R   L  +    +  Y+           Q+ LF G  GK  +       ++       + 
Sbjct: 253 RQTLLSKTCLHDLRLYFT------KYRPQVYLFEGRYGKKYSGESVLSIVKSAAERARIR 306

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +  T H LRHSFATHLL +G DLR IQ +LGH    TT+IYT+V +
Sbjct: 307 VRVTPHVLRHSFATHLLESGTDLRHIQVLLGHGSTKTTEIYTHVAT 352


>gi|153931223|ref|YP_001384765.1| phage integrase family site specific recombinase [Clostridium
           botulinum A str. ATCC 19397]
 gi|152927267|gb|ABS32767.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 19397]
          Length = 281

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 134/294 (45%), Gaps = 29/294 (9%)

Query: 24  NLEIER--GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
            L  ++  GLS  TL +Y+ +   F  +L          + +  ++  ++R F+++ R +
Sbjct: 12  YLAAKKLDGLSLKTLLNYKYNLAIFADYLR---------KPLATINAMDLRIFLAQ-RCK 61

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
           K+   S+   +S +KSF  +L   +   ++  L ++  K+   + RALN+++   L    
Sbjct: 62  KMKASSVNGQISILKSFFGWLHMEEYIPKNPSLKLKQTKQPKRVRRALNQEELELLRQAC 121

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
             +             A+L  L   G R+SE + +   +I  ++ +L + GKG+K R V 
Sbjct: 122 KTNRE----------KALLEFLISTGCRLSEVVGIDKNDIDWNEMSLHVIGKGNKERKVY 171

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGLPLS 259
                +  + +Y  +       +I   LF   +     L     QR I+++ + +G   S
Sbjct: 172 FDVKTKILLKKYLAIRN-----DITPALFVASKGTHARLGGRSIQREIKKIAKRVGTEKS 226

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              H  RHSFAT  +++G  L  +Q I+GH   +TTQIY  ++ +N      +I
Sbjct: 227 IYPHLFRHSFATGKINSGMPLPVLQHIMGHENPATTQIYAELSEENIKHEYKKI 280


>gi|86133261|ref|ZP_01051843.1| phage integrase family protein [Polaribacter sp. MED152]
 gi|85820124|gb|EAQ41271.1| phage integrase family protein [Polaribacter sp. MED152]
          Length = 385

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 81/279 (29%), Positives = 135/279 (48%), Gaps = 30/279 (10%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRS 87
           +  S+ TL++Y      F+ F         + +    L   ++  FI K    +     S
Sbjct: 104 KRYSESTLKTYTFFIADFINFH--------SKKACSDLDNRDVELFIEKVFIERNYSVSS 155

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
            ++ +S +K F  Y    KI      + +   KKS  LP  L++++ L ++         
Sbjct: 156 QRQFISALKIFTNYYPSTKIND----IELTRPKKSKKLPSVLSQEEVLRII--------- 202

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
            +   + ++ AI+ LLY CGLRISE ++L  ++   ++  L ++ GKG K R V L  S 
Sbjct: 203 -SVTTNLKHRAIIALLYSCGLRISELINLKLKDFHIERKQLIVKSGKGRKDRYVSLAESF 261

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              +  YY       +   +     G+ G+  +    + ++++  +  G+  + T HTLR
Sbjct: 262 MPLLKNYYY------SYEPKEFFVEGMNGEKYSASSVRAFLKKSCKKAGIQRAVTPHTLR 315

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           HS+ATHLL NG D+R IQS+LGH R  TT IYT+V  K+
Sbjct: 316 HSYATHLLENGVDIRYIQSLLGHSRPETTMIYTHVKRKD 354


>gi|270292983|ref|ZP_06199194.1| putative integrase/recombinase XerD [Streptococcus sp. M143]
 gi|270278962|gb|EFA24808.1| putative integrase/recombinase XerD [Streptococcus sp. M143]
          Length = 298

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 85/296 (28%), Positives = 129/296 (43%), Gaps = 26/296 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L   +  + LS  T+++Y+ D  QF                     Y  + ++I     
Sbjct: 9   YLDYCKTHKRLSSHTIRAYKNDLMQFYNS-----------------DYDNVESYIEHLTQ 51

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEK----QAL 135
             I   +L+R ++ +K F  YLK + I  E+    +R   +    LP+ +         L
Sbjct: 52  SNIKTNTLRRKIACMKVFYNYLKYQNIIEENPFNQLRFQFRTEKILPKTIPYDVLKSIFL 111

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L   V+L  +   K    RN  I+ LL   G+RISE   +  ++I     TL I GKG 
Sbjct: 112 YLEQRVVLSKTDYQKQHAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLHIIGKGK 171

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYL 254
           K RI+ L       +LE Y     +        LF G    KPL+    +  ++++    
Sbjct: 172 KERILFLGDQKTFNLLETYINKTRN---EFNDFLFPGKHSLKPLSEQSVRLILKRIVEQN 228

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            L  + T H  RHSFAT LL N  D+R IQ ILGH  +S TQIYT+V+     + +
Sbjct: 229 SLFRTITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISVTQIYTHVSHSKQKEIL 284


>gi|253583755|ref|ZP_04860953.1| integrase/recombinase [Fusobacterium varium ATCC 27725]
 gi|251834327|gb|EES62890.1| integrase/recombinase [Fusobacterium varium ATCC 27725]
          Length = 294

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 128/297 (43%), Gaps = 11/297 (3%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + K  +++L   E     S  T++S + D  Q   +L    +    I+ I +++   +R 
Sbjct: 4   IEKNIKDFLYFAEFGENKSLNTIKSLKKDLSQLSEYLKNIEK----IEDISKITPVMLRG 59

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           FI + +  ++G RS+ R LS ++SF KYL K  +   + I  + +       P  L  ++
Sbjct: 60  FIIELQKNEVGKRSINRKLSSLRSFFKYLIKNNLIKNNPIEIINSPSFEAEKPDILTLEE 119

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L + + +  ++       R+  IL LLY  G+  +E L +  Q    D  TL +   
Sbjct: 120 INKLREVINIDNTN-----GLRDRLILELLYSSGITSTEMLGIGEQVFDLDNRTLLV-SN 173

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           G   R V      R+    Y +              LF    G  L+    +R + +   
Sbjct: 174 GKTNRTVFFSQRTREYFKRYIEAKKEKYKEKYNSSILFVNGSGNRLSDRSLRRIVDRYAA 233

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             G+    + ++ RH+FA HLL+ G  L  +Q ++GH  + +T+IY  +  K   D+
Sbjct: 234 KAGITREISPYSFRHTFAVHLLAKGMGLNFLQELMGHVTIESTKIYQEILHKIPFDF 290


>gi|247663508|gb|ACT09079.1| IntI1 [Vibrio cholerae]
 gi|247663514|gb|ACT09082.1| IntI1 [Vibrio cholerae]
          Length = 313

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 77/332 (23%), Positives = 137/332 (41%), Gaps = 64/332 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLPTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           SFAT LL +G D+R++Q +LGH  +STT IYT
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313


>gi|113473885|ref|YP_718148.1| putative integrase [Sphingomonas sp. KA1]
 gi|112821565|dbj|BAF03436.1| putative integrase [Sphingomonas sp. KA1]
          Length = 334

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 74/311 (23%), Positives = 130/311 (41%), Gaps = 21/311 (6%)

Query: 13  ELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            L      +L ++L  ER +S  T+++Y       + F A   + + T   +  L    I
Sbjct: 3   ALAPHLTAYLREHLPRERAVSPHTVKTYANCFVLLVRFAADRLKRRPTDLEVEDLGIDLI 62

Query: 72  RAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPR 127
            AF+     Q     R+    L+ I+SF +Y++ R        L +R++   K   +L  
Sbjct: 63  LAFLDHIEAQRGSSVRTRNGRLAAIRSFFRYIEYRVPVCLDQALRVRSIPSKKTDKALID 122

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQS 186
            L+  +   L+D            +  R+ A+L+L Y  GLR+SE ++L  ++      S
Sbjct: 123 YLDRAEIKALLD-----APDPRTRLGTRDRAMLHLAYAGGLRVSELVTLQLRDFPDRSLS 177

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           T+ I GKG + R++PL    + A+  +  + P          +F    G+P+    F   
Sbjct: 178 TVHIMGKGRRERVLPLWKETQFALRAWLAIRPDAEVAE----IFLNANGQPMTRDGFAFR 233

Query: 247 IRQLRRYLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           + +  +         L    T H LRHS A H L+  GD+R +   LGH  + +T+ Y  
Sbjct: 234 LAEHVKTAAEKQPSILGKRVTPHVLRHSCAMHTLAATGDIRKVALWLGHASIQSTEAYLR 293

Query: 301 VNSKNGGDWMM 311
            +       + 
Sbjct: 294 ADPDEKLQILA 304


>gi|331084863|ref|ZP_08333951.1| hypothetical protein HMPREF0987_00254 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410957|gb|EGG90379.1| hypothetical protein HMPREF0987_00254 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 354

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 64/307 (20%), Positives = 126/307 (41%), Gaps = 25/307 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTE-------EKITIQTIRQLSYTEIRAFISKRRTQK-- 82
           S  T  SY  D R F  FL             + T++ + QLS  +I  ++   +  +  
Sbjct: 43  SAKTRISYAYDIRTFFYFLVECNPLYRDRSTTQFTLEDLDQLSSVDIEEYLEYLKVYESS 102

Query: 83  ------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                   ++ L R +S ++SF  Y  KR+   ++  L +   K        L+  +   
Sbjct: 103 ENKQITNSEQGLARKMSALRSFYGYFFKRQAIEKNPTLLVDMPKLHEKAIIRLDTDEVAI 162

Query: 137 LVDNVLLHTSHET-------KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           L+D +    +  T       +    R+ AI+ LL G G+R+SE + L   ++    + ++
Sbjct: 163 LLDYIETCGNQLTGQKKVYYEKTKYRDLAIITLLLGTGIRVSECVGLDINDVDFKNNGVK 222

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYI 247
           +  KG    +V     V KA+ +Y +L   ++    + +  LF   + K +     +  +
Sbjct: 223 VTRKGGNEMVVYFGREVEKALRDYLELTRKNITPLPDHENALFLSTQRKRMGVQAVENMV 282

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNG 306
           ++  + +      T H LR ++ T L    GD+  +  +LGH  ++TT + Y  ++    
Sbjct: 283 KKYAKQVTPNKKITPHKLRSTYGTSLYKETGDIYLVADVLGHKDVNTTKKHYAAIDESRR 342

Query: 307 GDWMMEI 313
                 +
Sbjct: 343 RQAASAV 349


>gi|331004724|ref|ZP_08328177.1| hypothetical protein HMPREF0491_03039 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330408981|gb|EGG88441.1| hypothetical protein HMPREF0491_03039 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 346

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 67/306 (21%), Positives = 126/306 (41%), Gaps = 18/306 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L  E+  S+ T++SY         F+       +   T   +  + I  F+S   T
Sbjct: 15  FLAFLPEEQKCSQNTIRSYRKSLELLFDFVKEKNSVALNEITFEMMDRSTISEFLSYLET 74

Query: 81  QK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN---SLPRALNEKQALT 136
           ++     +    L  I++F KY  +  IT  +++  ++ +K++    ++   ++E     
Sbjct: 75  ERNCSISTRNHRLHCIRAFFKYAAQEDITVIAHLEEIQKVKRAKQPETIVEHMSEDAVQA 134

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLRIQGKGD 195
           +++               R++ +L  LY  G R+ E + +   +I   +   + I GKG 
Sbjct: 135 ILEQ-----PDTCTEKGKRDTFLLLFLYKTGARVQELVDIRLCDIQLGKYPKVTIHGKGA 189

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNPGVFQRYIRQLRR 252
           K R +PL   V + + +Y  L   + NL     LF   R    K +     ++ + +   
Sbjct: 190 KTRSIPLRDDVVQHLKKYLTLFHQEQNLFSDQYLFYVTRNQIRKRMTEDNVRKLVAKYGV 249

Query: 253 YL-----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                   +P +   H  RHS+A  L  NG DL  I   LGH  L TT IY + +++   
Sbjct: 250 QARKICKEVPENVHPHLFRHSWAMILYQNGVDLTLISQWLGHSNLETTLIYAHADTELKR 309

Query: 308 DWMMEI 313
             + + 
Sbjct: 310 KALEKA 315


>gi|291515144|emb|CBK64354.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 372

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 125/287 (43%), Gaps = 30/287 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L+  R  S  T++ Y    R F                I  ++  EI  ++   
Sbjct: 94  EGYLEKLQQVR-YSDHTVRVYTSYFRDFQQHFEGRK--------IETVTPGEINDYLLYL 144

Query: 79  -RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + I      + ++ IK + + +  ++         +   K+  +LP  L++++   +
Sbjct: 145 IHEKNISSCQQNQRINAIKFYYEKVLGQERR----CYKVNRAKREKTLPDVLSKEEIKKI 200

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDK 196
           +D             D R   +  +LY  GLRISE L L P +I + +S +R++ GKG K
Sbjct: 201 LD---------VTVTDLRFFCMFSILYSAGLRISELLELKPGDINESRSLIRVRQGKGKK 251

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R   L   + K + EY  L         ++ LF    G+P    +  + ++   R  G+
Sbjct: 252 DRYTLLSRPLMKKLTEYNRLY------KPKVWLFEHRPGEPFTESIVSKRLKAAAREAGI 305

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
                 H LRHSFATHLL  G D++ ++ ++GH  + TT+ Y ++  
Sbjct: 306 TKRIYPHLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHIAD 352


>gi|169826674|ref|YP_001696832.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41]
 gi|168991162|gb|ACA38702.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41]
          Length = 277

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 129/289 (44%), Gaps = 30/289 (10%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
             S  T++SY+    QF            + +   ++   +IR +++    + +  RS++
Sbjct: 16  QFSSETIRSYKISLSQFFS---------ESEKNYDEVRAKDIRNWLATLSEKGLKIRSIQ 66

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             L+ +KSF +Y  +      +    ++  K  + LP  LN++Q   L          E 
Sbjct: 67  LKLTALKSFYQYCIEENKINHNPTKKVKTPKSEDLLPYYLNKRQLALL---------QEL 117

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRK 208
              + R  AI+ +LY  G+RI+E L++  ++I  D   + I+ GKG+K R V        
Sbjct: 118 TKDNLRERAIVEVLYATGVRINELLNIKLEDIKWDTRQIWIRKGKGNKDRFVLFSHECAL 177

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            +  Y  +            LF   RGK ++  + Q + R+  + LG     T HTLRH+
Sbjct: 178 RLKNYLHVRY-----ENSDFLFSSPRGKHISCDLVQLFFRKYSKELG--FKVTPHTLRHT 230

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           FA HL   G +   IQ +LGH  +++T+IYT +          + YDQ 
Sbjct: 231 FAAHLAEKGMEFIYIQDLLGHANINSTRIYTRL----MNHARKKQYDQY 275


>gi|212695142|ref|ZP_03303270.1| hypothetical protein BACDOR_04680 [Bacteroides dorei DSM 17855]
 gi|212662319|gb|EEB22893.1| hypothetical protein BACDOR_04680 [Bacteroides dorei DSM 17855]
          Length = 353

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 76/317 (23%), Positives = 133/317 (41%), Gaps = 16/317 (5%)

Query: 9   IVSFELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           +   +  K+  ++L + L  ERGLS  T++SY+     F+ F+       +    I+ ++
Sbjct: 17  MKPTDFAKKLTDFLSKYLPCERGLSTNTIESYKTTFILFITFMEEKKNIAVNKLAIKNIT 76

Query: 68  YTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKY---LKKRKITTESNILNMRNLKKSN 123
              I AF+   ++++     +    L+ + SF +Y        +     IL+++  K   
Sbjct: 77  KENIIAFLEWLQSERHCSTATRNVRLAALHSFFRYLQYEMPENLNEWQQILSIKAKKNIK 136

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
                L       L+         ++     R+ A+L L+Y C  R+ E + LTP  I  
Sbjct: 137 KNVNYLTVDGIQLLL-----QQPDQSTKKGRRDLAMLSLMYDCAARVQEIIDLTPAMIRL 191

Query: 184 DQ-STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
            +  T+++ GKG+K RIVPL+      +  Y        +     PLF   R +      
Sbjct: 192 TKPYTIKVIGKGNKPRIVPLMEKQVIHLKRYLVENKLLESHANFSPLFSNSRNEKFTRQG 251

Query: 243 FQRYIRQLRRYLGLPL-----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
               ++       +         + H+LRHS A HLL  G +L  I+ ILGH  + TT+I
Sbjct: 252 IANILQTYANAARVKDSTLIPKLSPHSLRHSKAMHLLQAGVNLVYIRDILGHESVLTTEI 311

Query: 298 YTNVNSKNGGDWMMEIY 314
           Y   +SK   + +   Y
Sbjct: 312 YARTDSKQKREAIENAY 328


>gi|327474308|gb|EGF19715.1| integrase/recombinase XerD [Streptococcus sanguinis SK408]
          Length = 298

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 130/296 (43%), Gaps = 26/296 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L   +  + LS  T+++Y+ D  QF                     Y  + ++I +   
Sbjct: 9   YLDFCKTHKRLSSHTIRAYKNDLMQFYNS-----------------DYDNVESYIEQLTQ 51

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQA----L 135
             I   +L+R ++ +K F  YLK + I  E+    +R   +    LP+ +         +
Sbjct: 52  SNIKTNTLRRKIACMKVFYNYLKYQNIIEENPFNQLRFQFRTEKVLPKTIPYDILKSIFI 111

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L   V++  +   K    RN  I+ LL   G+RISE   +  ++I     TL+I GKG 
Sbjct: 112 YLEQKVIVSKTDYQKQHAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLQIIGKGK 171

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYL 254
           K RI+ L       +LE Y     +        LF G    KPL+    +  I+++    
Sbjct: 172 KERILFLGDQTTFNLLETYINKTRN---ESNDFLFPGKHSLKPLSEQSVRLVIKRIVEQN 228

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               + T H  RHSFAT LL +  D+R IQ ILGH  +S TQIYT+V+     + +
Sbjct: 229 NFSRTITPHMFRHSFATMLLDSDVDIRYIQQILGHSSISITQIYTHVSHSKQKEIL 284


>gi|120435586|ref|YP_861272.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|120435706|ref|YP_861392.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|117577736|emb|CAL66205.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|117577856|emb|CAL66325.1| phage integrase family protein [Gramella forsetii KT0803]
          Length = 337

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 75/329 (22%), Positives = 136/329 (41%), Gaps = 11/329 (3%)

Query: 9   IVSFELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           +   +  K   +++ + L  ERG S  T+ +Y       L F+      K+   T+ ++ 
Sbjct: 1   MKPTDFSKYISDFIIRYLPDERGASVNTITAYRDTFVLLLDFIEKEKLLKVEKLTLAKIK 60

Query: 68  YTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
              I  F+   ++ +K  D +    L+ I SF +YL+   +        + +++   +  
Sbjct: 61  KETIIEFLDWIQKERKCSDSTRNMRLAAIHSFYRYLQYENLDNLHECQKVLSIRSKKTRK 120

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
            ++       +   +LL     T     R+ A+L L Y  G R+ E + LTP  +   + 
Sbjct: 121 ESITYLSIEGI--RLLLQQPDTTTTRGRRDLALLSLTYDTGARVQEIIDLTPSRLRLGKP 178

Query: 187 -TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             ++I GKG+++R+VP+L +    +  Y +    D       PLF   R +         
Sbjct: 179 PVIKIIGKGNRVRLVPMLDAQIIHLKNYMEEHRLDQPTANIHPLFFNSRKEKFTRAGINH 238

Query: 246 YIRQLRRYLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            + +            +P   + H+ RHS A HLL  G +L  I+ ILGH  + TT+IY 
Sbjct: 239 ILHKYMDMARKADNTLIPDKASCHSFRHSKAMHLLQAGVNLVYIRDILGHVSVQTTEIYA 298

Query: 300 NVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
             +S+     +   Y   +P       KN
Sbjct: 299 RADSRQKRKALENAYVDINPDEEPVWTKN 327


>gi|317055535|ref|YP_004104002.1| integrase family protein [Ruminococcus albus 7]
 gi|317057168|ref|YP_004105635.1| integrase family protein [Ruminococcus albus 7]
 gi|317133858|ref|YP_004089769.1| integrase family protein [Ruminococcus albus 7]
 gi|319788794|ref|YP_004090109.1| integrase family protein [Ruminococcus albus 7]
 gi|315447804|gb|ADU21368.1| integrase family protein [Ruminococcus albus 7]
 gi|315449437|gb|ADU23001.1| integrase family protein [Ruminococcus albus 7]
 gi|315450320|gb|ADU23883.1| integrase family protein [Ruminococcus albus 7]
 gi|315450661|gb|ADU24223.1| integrase family protein [Ruminococcus albus 7]
          Length = 334

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 75/308 (24%), Positives = 136/308 (44%), Gaps = 21/308 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  L  +      T+ SY    +  L F++  + + I+ +T+ ++    +  F+S    
Sbjct: 13  FMSYLMKQHNYGPNTVSSYRDTFKLLLKFMSE-SGKSISKKTVDEIDCDVVLKFLSWLSN 71

Query: 81  -QKIGDRSLKRSLSGIKSFLKYLKK---RKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            +K G  +    L+ IKSF +Y+           S IL++   K+   LP  ++      
Sbjct: 72  VRKNGVPTQNVRLAHIKSFFRYVMMISPEYSGQCSEILSIPFAKEDKRLPDCMSTDAIKQ 131

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-LRIQGKGD 195
           ++      +   +     R+ AIL L+Y    R+ E +SL  ++    Q   + + GKG+
Sbjct: 132 ML-----SSIDSSSNEGLRHLAILSLMYDSACRVQEIISLDVKDFQPGQCCRIYVHGKGN 186

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R +PLL    K I +Y         L  + P+F    G  L     +  IR+  +   
Sbjct: 187 KYRTIPLLGKTEKIISKYI----RQFGLMQESPMFCNRNGDRLTRQGIRYIIRKYSKLAN 242

Query: 256 ------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                 +  S   H LRHS ATHL+ NG ++ +++  LGH  ++TTQIY + N +     
Sbjct: 243 DTVPGIITGSVYPHRLRHSKATHLVDNGVNIYNVRDFLGHESVATTQIYLSTNPEVIRKA 302

Query: 310 MMEIYDQT 317
           +  + ++T
Sbjct: 303 IETVAEKT 310


>gi|259909532|ref|YP_002649888.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224965154|emb|CAX56686.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 344

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 70/313 (22%), Positives = 134/313 (42%), Gaps = 25/313 (7%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT----- 80
             ER  S+ TL+       +F+ +      ++  I     ++   +  +           
Sbjct: 42  RRERNWSETTLKVQTHHGYRFICWA-----QERGIHHAADVTRPVLERWQRHLYRYRKGN 96

Query: 81  -QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLV 138
            + +  R+ + +L  ++ + ++L K+ +   +   ++   +    LPR  L+ +Q   +V
Sbjct: 97  GEPLSPRTQRTALQPLQVWFRWLAKQNLILANPAADLELPRLEKHLPRTILSVEQVEDIV 156

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197
           +   L+T         R+ A+L LL+  G+R  E   L   +    +  L I QGKG + 
Sbjct: 157 NLCDLNT-----LQGMRDRALLELLWSTGIRRGEVARLETWSADFSRKILTIVQGKGKQD 211

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLG 255
           R++P+       +  Y      ++  +     LF  + G   L        +    R  G
Sbjct: 212 RVIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVAGLTANGITHAVVPYLRAAG 271

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + H  RH+ AT +L NG DLR IQ++LGH  + +TQIYT V+ K     +  ++ 
Sbjct: 272 IEKG-SCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIK----ALQAVHA 326

Query: 316 QTHPSITQKDKKN 328
            THP+  + D ++
Sbjct: 327 STHPAEREADSEH 339


>gi|124485609|ref|YP_001030225.1| formylmethanofuran dehydrogenase subunit E-like protein
           [Methanocorpusculum labreanum Z]
 gi|124363150|gb|ABN06958.1| phage integrase family protein [Methanocorpusculum labreanum Z]
          Length = 320

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 74/315 (23%), Positives = 134/315 (42%), Gaps = 40/315 (12%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR------------QLS 67
            +L NL+  +  ++ T+++Y    + F  +  +  E   ++ T                +
Sbjct: 30  RYLSNLQT-KNYAENTIEAYGRILKLFATYETYLKENDGSVPTSSEELNNFGMGAEIDTN 88

Query: 68  YTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
             EI  F +  R ++ +   SL++  S + SF  YL  + IT  + +  +   K  +   
Sbjct: 89  SYEIGDFFTLLRNERQLSPASLRQYDSALSSFYGYLINQDITEANPMTKVDRPKIKDREL 148

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L   + +  ++++           + RN+ ++  +Y  G+RISE   L  ++I  ++ 
Sbjct: 149 KYLKHNEVVAFINSIE----------NPRNALLIRTIYATGMRISEICGLLAEHIDFEEE 198

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           T+R++GKG KIRIV         I E+       LN     P+F G  G  ++P   Q  
Sbjct: 199 TIRVRGKGGKIRIVFCDSDTLNKIREH-------LNGKKSGPVFEGRNGNAISPRTVQHI 251

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
                     P   T H +RHS+A+ L     +LR +Q  LGH  + TT+IY + +    
Sbjct: 252 FNIYA-----PPGITPHKIRHSYASELYKRSHNLRVVQENLGHNSIQTTEIYIHTD---- 302

Query: 307 GDWMMEIYDQTHPSI 321
            D   + Y    P  
Sbjct: 303 IDERRKAYRSYFPLA 317


>gi|150390005|ref|YP_001320054.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
 gi|149949867|gb|ABR48395.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
          Length = 354

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 133/290 (45%), Gaps = 35/290 (12%)

Query: 22  LQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           LQ LE +   +G S  T +SY    ++FL F+    E          L+  ++  ++   
Sbjct: 81  LQQLEKQFTLKGYSPKTKKSYIGHVKRFLGFINNKPE---------VLTKQDVEKYMYHL 131

Query: 79  -RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q+       ++LS IK + ++  K+       + ++   KK  +LP  L++++ L++
Sbjct: 132 LNVQENSHAFANQALSAIKFYYQHSLKKDKV----LYDLPRPKKEKTLPNILSQREVLSI 187

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDK 196
           +D+V           + ++ +IL L Y  GLR+ E + L   +I  D+  + ++ GKG K
Sbjct: 188 LDSV----------NNIKHKSILLLTYSAGLRVGEVVRLKVGDIDSDRMLIHVRQGKGRK 237

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLG 255
            R   L       + +Y  +         +  LF G +    L     Q+      +   
Sbjct: 238 DRYTILSEVALSTLRKYAMI------EKPKDWLFPGGKENCFLTERSVQKTFSVACKRAK 291

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +    + H+LRHSFATHLL  G DLR IQ +LGH    TT+IYT+V+  N
Sbjct: 292 VKKHASVHSLRHSFATHLLEGGTDLRYIQELLGHSSSKTTEIYTHVSVAN 341


>gi|297184071|gb|ADI20190.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
          Length = 343

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 83/303 (27%), Positives = 152/303 (50%), Gaps = 13/303 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L  ERG S  T  +Y+ +  ++ ++L    +      +++      ++ +I  
Sbjct: 52  IDQFLAYLIAERGYSPKTSVAYKKELERWALYLREEAD-----ASLKAAQKAHVKRYIVW 106

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  Q I  RS+ RSLS I++F K+  +  +  E+    +R++K +  +  ++ +     L
Sbjct: 107 RNKQGISPRSINRSLSCIRTFYKWAIREALVCENPGQGVRSMKTAKKVVMSVPKDDLKAL 166

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           V++  L T   T +   R+  +L LLYG GLR +E +SLTP +    +  +R+ GK +K 
Sbjct: 167 VNDPELFT---TDFEGRRDQLLLLLLYGLGLRRAEVISLTPTHFDWSRKLVRVIGKRNKE 223

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R +P+   + +  L Y ++    L +     L    +GK L   +    +          
Sbjct: 224 RQIPMPALLEEYYLRYVEIRD-QLPVRHDATLLLTAKGKKLYDNLVYNRVLFYLNRTTSV 282

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           +    H LRHS+ATHLL+ G D+ +++ +LGH  LS+TQ+YT  + +     ++++Y+QT
Sbjct: 283 VDKNPHALRHSYATHLLNAGVDINTVKELLGHESLSSTQVYTTSSFEE----LIKVYNQT 338

Query: 318 HPS 320
           HP 
Sbjct: 339 HPK 341


>gi|37525317|ref|NP_928661.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37527576|ref|NP_930920.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36784744|emb|CAE13652.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36787011|emb|CAE16085.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 376

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 75/309 (24%), Positives = 135/309 (43%), Gaps = 18/309 (5%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT---QK 82
             ER  S+ TL+     T  F+++             I +      + ++ + R    + 
Sbjct: 42  RQERNWSETTLKVQTHHTYHFILWATDRGL--YYAADITRPILERYQRYLYQYRKTNGEP 99

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLVDNV 141
           +  R+ +  L  ++ + K+L K+ +   +   ++   ++   LPR  L+  +        
Sbjct: 100 LSIRTQRTQLQPLQVWFKWLTKQNLILANPAADIELPREEKRLPRYILSIDEIE-----H 154

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV 200
           +L          AR+ A++ LL+  G+R SEA  L   +I   + T+ I+ GKG+K R++
Sbjct: 155 ILSLPDPNTLQGARDRALMELLWSTGIRRSEAARLDIYSIDGSRKTVTIRQGKGNKDRVL 214

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPL 258
           PL       +  Y       L +   +  LF  + G   L P      +    R  G+  
Sbjct: 215 PLGERALNWLQFYQQQVRPQLLVTPDIQSLFVAMDGLDGLQPNGITNAVSGYIRAAGIEK 274

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H  RH+ AT +L NG DLR IQ++LGH  + +TQ+YT V+ +     +  ++  TH
Sbjct: 275 KGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIR----ALQAVHASTH 330

Query: 319 PSITQKDKK 327
           P+    D+K
Sbjct: 331 PAEQMADEK 339


>gi|322806105|emb|CBZ03672.1| tyrosine recombinase XerD [Clostridium botulinum H04402 065]
          Length = 205

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 59/215 (27%), Positives = 111/215 (51%), Gaps = 10/215 (4%)

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
           + +E   L     K   ++P+ L+ ++   L++      S  +     R+ A+L L+Y  
Sbjct: 1   MVSEDPTLGYEIPKIERTIPKILSVEEVDKLLN------SPNSSKKGLRDKAMLELMYAT 54

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G++I+E L+L   +I    + ++ +G   + RI+P+     K +  Y ++ P  +N+   
Sbjct: 55  GVKITELLNLNIYDINLKFNYIKCRGSKKRERIIPIGSYAIKCLKNYLEVRP-AINVYNL 113

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
             LF  ++G  +    F + I+   +   +     ++TLRHSFA HLL NG D++S+Q +
Sbjct: 114 DYLFLNLKGTQMTRQGFWKIIKFYAKEASIDKEIDSYTLRHSFAVHLLQNGADIKSVQEL 173

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           LGH  L+ TQIY++++ K+    + E+Y   HP  
Sbjct: 174 LGHKDLAATQIYSSISKKS---KIAEVYKNAHPRA 205


>gi|32474798|ref|NP_867792.1| integrase/recombinase Y4QK [Rhodopirellula baltica SH 1]
 gi|32445338|emb|CAD75339.1| putative integrase/recombinase Y4QK [Rhodopirellula baltica SH 1]
          Length = 461

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 71/281 (25%), Positives = 125/281 (44%), Gaps = 31/281 (11%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + L I R  +  T+++Y      FL +             + Q+   +IR ++       
Sbjct: 73  RELRI-RFYAVSTIKNYRSAWVCFLRWYRG---------PLDQIDQEDIREYLELLVAGG 122

Query: 83  IGDRSLKRSLSGIKSFL-KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                +  +LS +++ L K+   R        + + + +KS  LP  +++K+   +++  
Sbjct: 123 ASASEVSVTLSALRTGLDKFCLLRC------TVGLVSPRKSKQLPVVMSKKEVQRMMEA- 175

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV 200
                        R+  +L +LY  GLR++E   L   +   D+  +R+Q GKG K R V
Sbjct: 176 ---------ARTLRDKLLLTVLYATGLRVAEVARLQWSDFDFDRQQIRVQLGKGKKDRYV 226

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
            L   +   + + +        +    P       + L+P   QR ++Q R   G+  + 
Sbjct: 227 MLADDLLPLMRQLWR---HTKGVGYLFPSEGRRVDRHLSPRTIQRAVKQARILSGIGKAV 283

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T H+ RHSFATHL+ +G D+R IQ +LGH  L TT +YT V
Sbjct: 284 TPHSFRHSFATHLIESGTDIRFIQKLLGHTNLETTSLYTKV 324


>gi|94310186|ref|YP_583396.1| phage integrase [Cupriavidus metallidurans CH34]
 gi|93354038|gb|ABF08127.1| tyrosine-based site-specific recombinase , N-terminal SAM-like
           protein [Cupriavidus metallidurans CH34]
          Length = 336

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 74/322 (22%), Positives = 128/322 (39%), Gaps = 25/322 (7%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+  NLP I+        + +L+ L   +GL   +++SY    R FLIF+A      ++ 
Sbjct: 1   MKDFNLPSII-------HRYFLEYLPRHKGLQSSSIRSYRDSLRLFLIFVAGTHRLGVSE 53

Query: 61  QTIRQLSYTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKY---LKKRKITTESNILNM 116
             +  L Y  ++AF+      +     +  + L+ +  F +Y        + T + +  +
Sbjct: 54  LVLEHLDYPAVQAFLHSMEADRGNAISTRNQRLAALHVFYEYVGRTVPEMLPTSAKVAAI 113

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              +        L   +   +   +          + +R+ A+L LLY  G R+SE   L
Sbjct: 114 PMKRCPRPEMTFLGRDEVQAMFACIPAQ-----HRLSSRDRALLMLLYNTGARVSEVAHL 168

Query: 177 TPQNIMDDQ-STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
             + +     + +R+ GKG K R  PL     KA+    D      NL  + P+F G   
Sbjct: 169 KVEQLDLRSPARVRLLGKGSKWRTCPLWNQTAKALQAMLDERGT--NLPPESPVFVGASQ 226

Query: 236 KPLNPGVFQRYIRQLR---RYLGLPL---STTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
            P+      + IR         G        T H  RH+ A HLL +G ++  I+  LGH
Sbjct: 227 APMTRFGIYKRIRHYATLWEASGHTASAAKVTPHVFRHTTAVHLLESGVEVNVIRGWLGH 286

Query: 290 FRLSTTQIYTNVNSKNGGDWMM 311
             L TT  Y  +  +   + + 
Sbjct: 287 VNLETTNRYAEITIRMKAEALK 308


>gi|50122323|ref|YP_051490.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|49612849|emb|CAG76299.1| probable integrase/recombinase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 352

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 82/311 (26%), Positives = 135/311 (43%), Gaps = 25/311 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L +L      S  T++ Y    R F+ +      E+  +    Q+S   + A+     
Sbjct: 27  AYLAHLTAT-NHSPRTVEGYGERLRPFVTWC-----EERGLMQAAQVSLAALEAYQRHLH 80

Query: 80  TQKIGD-RSLKR-----SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEK 132
             +  D + L +      L+ I+   ++L  R     +    +   K    LP + L+E+
Sbjct: 81  GYRKADGKPLAQGGQLNRLTSIRMLFRWLLHRHHILYNPAEQLTLPKAEKRLPAQILSEE 140

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ- 191
           +   ++D               RN A+L +L+  GLR SE   L   ++   +  L ++ 
Sbjct: 141 ETEAVMD-----AQDTDTLTGLRNRAVLEMLWSTGLRRSELAGLMLDDVDVGRGVLVVRQ 195

Query: 192 GKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQ 249
           GKG+K R+VP+       +  Y D + P     +    LF  I GK L          R 
Sbjct: 196 GKGNKDRVVPVGLRALVWVQRYLDAVRPRLTTRHDSGYLFVTIWGKRLGRATLTILAGRA 255

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           +R    L  +   H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V   +    
Sbjct: 256 IRNDAHLKKAGACHVFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGH---- 311

Query: 310 MMEIYDQTHPS 320
           + +++++THP+
Sbjct: 312 LKQVHEKTHPA 322


>gi|254672660|emb|CBA06490.1| putative integrase/recombinase [Neisseria meningitidis alpha275]
          Length = 293

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 62/257 (24%), Positives = 112/257 (43%), Gaps = 9/257 (3%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
                  +L+N+  E G S+ T+ +Y  D  +    LA    E       + LS  +  A
Sbjct: 6   FAAHFDAYLENIVRE-GKSEHTVAAYRRDLEELFALLAQMPSEDAG-GVPQDLSRRDFTA 63

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            + +   + +  R+L R LS  + +  +L +R +       +++  K+   +P+AL ++ 
Sbjct: 64  ALRRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEW 123

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++D  +         +  R+ A+  L+YG GLR+SE   L   ++  D++ + + GK
Sbjct: 124 LNRMLDLPV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGK 179

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R VPL     +A+  Y  L     +      LF G  G  L+    Q+ + Q    
Sbjct: 180 GRKQRQVPLTGKSVEALKNYLPLRQTASDGK---ALFTGRNGTRLSQRQIQKRLAQWAAQ 236

Query: 254 LGLPLSTTAHTLRHSFA 270
            G     + H +RHS+A
Sbjct: 237 NGDGRHVSPHMMRHSYA 253


>gi|163796175|ref|ZP_02190137.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|163797772|ref|ZP_02191719.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|159176992|gb|EDP61556.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|159178634|gb|EDP63174.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
          Length = 276

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 79/277 (28%), Positives = 119/277 (42%), Gaps = 31/277 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R LS  T +SY     +F  F           ++  +L   ++RAF     +  I   SL
Sbjct: 8   RNLSPATQRSYLHAVAKFSRFFG---------RSPDRLGLEDVRAFQVHLVSTGISWPSL 58

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            +++  ++ F           E     +   ++   LP  L+  + +  ++ V    S  
Sbjct: 59  NQTVCALRFFYGVTLGHGEIPE----RIPYAREPRKLPVVLSADEVVRFLEAVASLKS-- 112

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR 207
                    A L   Y  GLR+SE ++L   ++   +  +R+  GKG K R V L   + 
Sbjct: 113 --------RAALTTAYAAGLRVSEVVALRVGDVDSGRMVIRVEHGKGGKDRYVMLSAQLL 164

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
             +  Y+ L         +  LF G    KP++  V     R  R   GL    T HTLR
Sbjct: 165 GILRTYWRLA------RPEHWLFPGREASKPIDVQVLHAACRSARAAAGLDKRVTVHTLR 218

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           HSFATHLL +G D+R IQ +LGH  LSTT  YT V++
Sbjct: 219 HSFATHLLESGTDIRIIQVLLGHANLSTTARYTQVSN 255


>gi|325263946|ref|ZP_08130679.1| site-specific recombinase, phage integrase family [Clostridium sp.
           D5]
 gi|324030984|gb|EGB92266.1| site-specific recombinase, phage integrase family [Clostridium sp.
           D5]
          Length = 355

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 64/303 (21%), Positives = 121/303 (39%), Gaps = 25/303 (8%)

Query: 32  SKLTLQSYECDTRQFLIFL-------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           S  T  SY  D R F  FL         YT ++ T++ + ++   +I  +    +  K  
Sbjct: 44  SAKTRISYAYDIRIFFHFLMENNPVYKNYTVDQFTVKDLERIEPVDIEEYQEYLKVYKGS 103

Query: 85  D--------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           +        + L R +S ++SF  Y  K ++  ++  L +   K  +     L+  +  +
Sbjct: 104 EDKQITNTEKGLARKMSALRSFYAYFFKHQVIEKNPTLLVDMPKLHDKAIIRLDTDEVAS 163

Query: 137 LVDNVLLHTSHET-------KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           L++ V       T       +    R+ AIL LL G G+R+SE + L  Q++    + ++
Sbjct: 164 LLEYVEHGGDDLTGQRKVYFEKTKNRDLAILTLLLGTGIRVSECVGLDIQDVDFKNNGVK 223

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYI 247
           +  KG    +V     V  A+  Y              +  LF   + K +     +  +
Sbjct: 224 VTRKGGNEMVVYFGEEVENALKMYLYTTRKSTAPLPGHENALFLSTQRKRIGVQAVENMV 283

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNG 306
           ++  R +      T H LR ++ T L    GD+  +  +LGH  ++TT + Y  ++    
Sbjct: 284 KKYARQITPNKKITPHKLRSTYGTALYKETGDIYLVADVLGHKDVNTTKKHYAAIDENRR 343

Query: 307 GDW 309
              
Sbjct: 344 RQA 346


>gi|116621640|ref|YP_823796.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116224802|gb|ABJ83511.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 336

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 78/339 (23%), Positives = 140/339 (41%), Gaps = 24/339 (7%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M  ++ P +   +LL     + + L  +R  S  T+ +Y    R FL F+A    + +  
Sbjct: 1   MPKHDFPTL--PKLLHSF--FHEWLVEQRNASHRTILAYRDAWRLFLRFVAQRRNKPVAA 56

Query: 61  QTIRQLSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE---SNILNM 116
            ++  L+  ++ AF+    + ++    +    L+ ++SF  ++ + +       + +L +
Sbjct: 57  LSLEHLTGADVLAFLQYIEKERRASVNTRNCRLAALRSFFSFVVEHEPRVALQCAEVLRV 116

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              K +    R L   +   ++          T     R+ A+L LLY  G RI EAL L
Sbjct: 117 PFKKATRRATRYLESVEVSAIL-----SQPDRTTVGGQRDHALLSLLYNTGARIQEALDL 171

Query: 177 TPQNIMDDQ-STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
            PQ++     + +R+ GKG K RI P+ P     +                 P+F     
Sbjct: 172 RPQDVYFKSPAHVRLMGKGRKERISPIWPETANLV----TALIRRQPRKPDEPIFVNRYR 227

Query: 236 KPLNPGVFQRYIRQLRRYLGLP------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
            PL    F+  +RQ                 T H  RHS A HL++ G D+  I+S LGH
Sbjct: 228 SPLTASGFRFRLRQYVEAAAKTVPTISRKRVTPHVFRHSTAVHLVAAGVDVTVIRSWLGH 287

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
            +L TT  Y   N +     + ++  +  P+   + K++
Sbjct: 288 AQLDTTNHYAQANLETKRKALEQVDPKLRPAKPPRWKRD 326


>gi|197301719|ref|ZP_03166789.1| hypothetical protein RUMLAC_00445 [Ruminococcus lactaris ATCC
           29176]
 gi|197299159|gb|EDY33689.1| hypothetical protein RUMLAC_00445 [Ruminococcus lactaris ATCC
           29176]
          Length = 375

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 69/303 (22%), Positives = 122/303 (40%), Gaps = 25/303 (8%)

Query: 32  SKLTLQSYECDTRQFLIFL-------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI- 83
           S  T  SY  D R F  FL         YT ++ T+Q + +L   +I  +    +  K  
Sbjct: 64  SARTRISYAYDIRVFFHFLMEVNPHYKNYTIDQFTVQDLERLDPVDIEEYQEYLKVYKNE 123

Query: 84  -------GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                   ++ L R +S ++SF  Y  KR+I +++  L +   K        L+  +   
Sbjct: 124 EDRQITNTEKGLSRKMSALRSFYGYYFKRQIISKNPTLLVDMPKLHEKAIIRLDTDEIAM 183

Query: 137 LVDNVLLHTSHET-------KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           L+D V     + T       +    R+ AIL LL G G+R+SE + L  Q++    + ++
Sbjct: 184 LLDYVEHGGENLTGQRLAYYEKTKNRDLAILTLLLGTGIRVSECVGLDVQDVDFKNNGIK 243

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYI 247
           +  KG    +V     V  A+  Y              +  LF   + K +     +  +
Sbjct: 244 VTRKGGNEMVVYFGEEVEHALKTYLYTTRKSTVPLSGHENALFLSTQRKRMGVQAVENMV 303

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNG 306
           ++  R +      T H LR ++ T L    GD+  +  +LGH  ++TT + Y  ++    
Sbjct: 304 KKYAREVTPNKKITPHKLRSTYGTALYKETGDIYLVADVLGHKDVNTTKKHYAAIDENRR 363

Query: 307 GDW 309
              
Sbjct: 364 RRA 366


>gi|16519921|ref|NP_444041.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
 gi|2497420|sp|P55636|Y4RC_RHISN RecName: Full=Putative integrase/recombinase y4rC
 gi|2182600|gb|AAB92469.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
          Length = 332

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 75/303 (24%), Positives = 111/303 (36%), Gaps = 20/303 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +LQ L  +R  S  T+ SY    RQ L F      +  +     ++    I AF+     
Sbjct: 15  FLQRLMQQRQASPHTISSYRDTFRQLLKFAERRLRKPPSRLNFEEIDAPLIVAFLDDLEN 74

Query: 81  -QKIGDRSLKRSLSGIKSFLKYLKKR---KITTESNILNMRNLKKSNSLPRALNEKQALT 136
            Q I  RS    L+ I SF +Y              +L + + + + +L   L   +   
Sbjct: 75  RQGISVRSRNLRLTAIHSFFRYAAFEIPEHSAQIQRVLAIPSKRFTRTLVNFLTRPEVDA 134

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLRIQGKGD 195
           L     L     + W   R+ A L +    GLR+SE   L   ++       LR+ GKG 
Sbjct: 135 L-----LAAPDRSTWSGRRDHAFLLVAVQTGLRLSEITGLKRDDLFFGTGAHLRVIGKGR 189

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R  P   S    +  +      +     Q  LF   RG+ L+    Q  + + R+   
Sbjct: 190 KERCTPFAKSTTAVLRNWLK----EPQRGDQGILFPSARGERLSVHGVQYMLNKHRQIAS 245

Query: 256 L------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                      T H LRH+ A  LL  G D   I   LGH  + TTQIY           
Sbjct: 246 AMSPSLEGKRVTVHRLRHTMAMDLLQAGVDRAVIALWLGHESVETTQIYLEATLAMKEAA 305

Query: 310 MME 312
           + +
Sbjct: 306 LAK 308


>gi|37524549|ref|NP_927893.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37525103|ref|NP_928447.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37525111|ref|NP_928455.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36783973|emb|CAE12838.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36784529|emb|CAE13429.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36784537|emb|CAE13437.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 376

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 76/309 (24%), Positives = 135/309 (43%), Gaps = 18/309 (5%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT---QK 82
             ER  S+ TL+     T  F+++             I +      + ++ + R    + 
Sbjct: 42  RQERNWSETTLKVQTHHTYHFILWATDRGL--YYAADITRPILERYQRYLYQYRKTNGEP 99

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLVDNV 141
           +  R+ +  L  ++ + K+L K+ +   +   ++   ++   LPR  L+  +        
Sbjct: 100 LSIRTQRTQLQPLQVWFKWLTKQNLILANPAADIELPREEKRLPRYILSIDEIE-----H 154

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV 200
           +L          AR+ A++ LL+  G+R SEA  L   +I   + T+ I+ GKG+K R++
Sbjct: 155 ILSLPDPNTLQGARDRALMELLWSTGIRRSEAARLDIYSIDGSRKTVTIRQGKGNKDRVL 214

Query: 201 PLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPL 258
           PL       +  Y   + P  L       LF  + G   L P      +    R  G+  
Sbjct: 215 PLGERALNWLQFYQQQIRPQLLVTPDIQSLFVAMDGLDGLQPNGITNAVSGYIRAAGIEK 274

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H  RH+ AT +L NG DLR IQ++LGH  + +TQ+YT V+ +     +  ++  TH
Sbjct: 275 KGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIR----ALQAVHASTH 330

Query: 319 PSITQKDKK 327
           P+    D+K
Sbjct: 331 PAEQMADEK 339


>gi|237668049|ref|ZP_04528033.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|237656397|gb|EEP53953.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 332

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 70/298 (23%), Positives = 125/298 (41%), Gaps = 29/298 (9%)

Query: 22  LQNLEIER--GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           L  L++++    SK TL +Y    R F  F+         ++ +  +S  +IR F++   
Sbjct: 59  LLYLQVKKLENYSKATLNNYMYTLRNFSNFI---------VKPVSNISKNDIRYFMA-IN 108

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +   ++   L+ IK+F ++L++ +I  ++    ++  +    L  +L  ++   +  
Sbjct: 109 YENLKPSTVNNKLACIKAFFEWLEQEEIIPKNPARYLQGTRLPKHLRHSLTIEELEKI-- 166

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                        D R  A++  L+  G RISE +     ++    + LR+ GKGDK R 
Sbjct: 167 --------RLSCKDVRERALIEFLFATGCRISEVVKANISDLDLSNNLLRVIGKGDKERT 218

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           V      +  I  Y D    +         F     K +     +  I ++     +  S
Sbjct: 219 VFFNDKTKLHIKNYIDTRKDENEALFIASKFP---YKRIGKRGLELIISRIGERADIGKS 275

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              H LRH+ AT  L +G D+ +IQ +LGH   STTQIY     +   D +   Y Q 
Sbjct: 276 VYPHLLRHTMATLGLQSGADITTIQHLLGHTTPSTTQIYA----ETSLDNLKHEYKQH 329


>gi|239817469|ref|YP_002946379.1| integrase family protein [Variovorax paradoxus S110]
 gi|239804046|gb|ACS21113.1| integrase family protein [Variovorax paradoxus S110]
          Length = 290

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 125/293 (42%), Gaps = 26/293 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ  L ++ + R L   T  +Y    R    FL          ++    +  ++R F   
Sbjct: 12  RQRLLDDMRM-RKLGPQTQSAYVRAVRYLASFLQ---------RSPDTATAEDLRRFQLH 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + +   +L  +++G+K F     +R       +  M  +    +LP  L+  +A  L
Sbjct: 62  LVDRGVSPITLNATITGLKFFFDVTLRRGEL----VERMSYVHVPQTLPVVLSRDEAARL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
           +              + +    L + YG GLR+SE ++L   +I  ++ TLR+ QGKG K
Sbjct: 118 I----------AAATNPKYHTALSIAYGTGLRVSEIVALKVGDIDSERMTLRVEQGKGRK 167

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLG 255
            R   L P + + +  ++        +     LF G     PL      R +        
Sbjct: 168 DRYAMLSPVLLERLRAWWRYANAKGKMLPNGWLFPGQNPVDPLTARQLNRAVHDAAAAAK 227

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +    T HTLRHSFATHLL    D+R IQ +LGH +L TT +YT+V ++   +
Sbjct: 228 IDKRVTMHTLRHSFATHLLEQKVDIRVIQVMLGHKKLETTSVYTHVATEVLRE 280


>gi|247663502|gb|ACT09076.1| IntI1 [Vibrio cholerae]
          Length = 313

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 77/332 (23%), Positives = 137/332 (41%), Gaps = 64/332 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLPTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAAMLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           SFAT LL +G D+R++Q +LGH  +STT IYT
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313


>gi|317477593|ref|ZP_07936813.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906241|gb|EFV27975.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 348

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 125/287 (43%), Gaps = 30/287 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L+  R  S  T++ Y    R F                I  ++  EI  ++   
Sbjct: 70  EGYLEKLQQVR-YSDHTVRVYTSYFRDFQQHFEGRK--------IETVTPGEINDYLLYL 120

Query: 79  -RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + I      + ++ IK + + +  ++         +   K+  +LP  L++++   +
Sbjct: 121 IHEKNISSCQQNQRINAIKFYYEKVLGQERR----CYKVNRAKREKTLPDVLSKEEIKKI 176

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDK 196
           +D             D R   +  +LY  GLRISE L L P +I + +S +R++ GKG K
Sbjct: 177 LD---------VTVTDLRFFCMFSILYSAGLRISELLELKPGDINESRSLIRVRQGKGKK 227

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R   L   + K + EY  L         ++ LF    G+P    +  + ++   R  G+
Sbjct: 228 DRYTLLSRPLMKKLTEYNRLY------KPKVWLFEHRPGEPFTESIVSKRLKAAAREAGI 281

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
                 H LRHSFATHLL  G D++ ++ ++GH  + TT+ Y ++  
Sbjct: 282 TKRIYPHLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHIAD 328


>gi|94497015|ref|ZP_01303588.1| integrase/recombinase [Sphingomonas sp. SKA58]
 gi|94498362|ref|ZP_01304921.1| integrase/recombinase [Sphingomonas sp. SKA58]
 gi|94422242|gb|EAT07284.1| integrase/recombinase [Sphingomonas sp. SKA58]
 gi|94423387|gb|EAT08415.1| integrase/recombinase [Sphingomonas sp. SKA58]
          Length = 334

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 83/338 (24%), Positives = 138/338 (40%), Gaps = 27/338 (7%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           +GN LP      LL+    + + L  +R  S  T++SY    R  L F+A      +   
Sbjct: 3   KGNPLPA-----LLRAF--FQEWLAEQRSASIHTIRSYRDTWRLLLRFVAERKGCGVARL 55

Query: 62  TIRQLSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKY---LKKRKITTESNILNMR 117
           T+  +S  E+RAF+      +K    +    L+ I+SF  +        I   S +L + 
Sbjct: 56  TLTDVSAGEVRAFLHHTEHGRKTTIGTRNCRLAAIRSFFSFVADKNPEYIAQCSEVLAVP 115

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             ++  S P  L  ++   +     L   + +     R+  +L  LY  G RI EAL L 
Sbjct: 116 LKREPTSAPCYLEPEEVEAI-----LAQPNRSTLEGLRDHVLLSFLYNSGARIQEALDLC 170

Query: 178 PQNIMDDQ-STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
           P+ I  D  + +R+ GKG K RI PL P     + +  +  P   +      +F    G+
Sbjct: 171 PEAIRFDAPNFVRLYGKGRKERICPLWPETVALLRKLLERQPRAPDER----IFVNRYGE 226

Query: 237 PLNPGVFQRYIRQLRRYLGLP------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
           PL     +  +                   T H+ RH+ A HL++ G D+  I+S LGH 
Sbjct: 227 PLGASGVRFKLNAYVEQAAKSTLTLQSKHVTPHSFRHATAVHLVAAGVDITVIRSWLGHV 286

Query: 291 RLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
            L TT  Y   N +     + ++      ++    K++
Sbjct: 287 SLDTTNHYAQANLETKRKALEQVGAPAASNVPPSWKRD 324


>gi|153814903|ref|ZP_01967571.1| hypothetical protein RUMTOR_01118 [Ruminococcus torques ATCC 27756]
 gi|317500415|ref|ZP_07958639.1| phage integrase family Integrase/recombinase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331089578|ref|ZP_08338477.1| hypothetical protein HMPREF1025_02060 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847934|gb|EDK24852.1| hypothetical protein RUMTOR_01118 [Ruminococcus torques ATCC 27756]
 gi|316898170|gb|EFV20217.1| phage integrase family Integrase/recombinase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330404946|gb|EGG84484.1| hypothetical protein HMPREF1025_02060 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 366

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 69/302 (22%), Positives = 119/302 (39%), Gaps = 24/302 (7%)

Query: 32  SKLTLQSYECDTRQFLIFL-------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI- 83
           S  T  SY  D R F  FL         YT ++ T+  I  L   +I  +    +  K  
Sbjct: 56  SANTRISYAYDIRVFFRFLMENNPVYKNYTIDQFTLADIENLEPVDIEEYQEYLKVYKND 115

Query: 84  ------GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                  ++ L R +S ++SF  Y  KR+  +++  L +   K        L+  + + L
Sbjct: 116 EKQVTNTEKGLARKMSALRSFYGYYFKRQAISKNPTLLVDMPKLHEKAIIRLDADEVVRL 175

Query: 138 VDNVLLHTSHETKWIDAR-------NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           +D V     H T    A        + AIL LL G G+R+SE + L   ++  + + +++
Sbjct: 176 LDYVDHGGDHLTGQKKAYFEKTRNRDLAILTLLLGTGIRVSECVGLDINDVDFENNGIKV 235

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIR 248
             KG    IV     V  A+  Y              +  LF   + K +     +  ++
Sbjct: 236 MRKGGNEMIVYFGEEVENALKTYMYTTRRTTLPLPGHENALFLSTQRKRMGVQAIENMVK 295

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGG 307
           +  R +      T H LR ++ T L    GD+  +  +LGH  ++TT + Y  ++     
Sbjct: 296 KYAREVTPNKKITPHKLRSTYGTSLYKETGDIYLVADVLGHKDVNTTKKHYAAIDEDRRR 355

Query: 308 DW 309
             
Sbjct: 356 QA 357


>gi|329923290|ref|ZP_08278774.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
 gi|328941382|gb|EGG37674.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
          Length = 311

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 78/305 (25%), Positives = 139/305 (45%), Gaps = 24/305 (7%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +E + +L  ++ +R  +K T Q+Y  D + FL  L          + I +++  ++  ++
Sbjct: 12  REMKLFLSYMK-DREYAKDTQQAYLHDIKHFLNSLEG--------KPITEVTDIDVMYYL 62

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNEKQA 134
           ++ R    G R   R  S I+ F K + + K+ + +  +++   K      P  L +   
Sbjct: 63  TQVRESGAGARYRNRCQSAIRLFYKVMIRFKLASINPAMDIEKAKVEKNRQPTYLQKP-- 120

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             ++D  L       K    R+  I+ L+   GLR+SE + L   +   + S++ + GKG
Sbjct: 121 --ILDACLNGIEGRYK---IRDVTIIALMAYAGLRVSEIVKLNLSDFDMENSSIAVLGKG 175

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +K R +PL   + K +  Y +      +       F     + ++  + Q    +    +
Sbjct: 176 NKWRYIPLPAELNKLLHMYLEERMVPRSTK-DNAFFVSQFRRRISKRMVQTIAEKTFEAM 234

Query: 255 GLPLS------TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                       +AH LRHSFAT LL NG DLR++Q +LGH  +STTQIYT+V  +    
Sbjct: 235 TEQFPQLSGQSLSAHKLRHSFATELLRNGADLRAVQELLGHEDISTTQIYTHVLDETKER 294

Query: 309 WMMEI 313
            M +I
Sbjct: 295 AMNKI 299


>gi|310766557|gb|ADP11507.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 345

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 70/312 (22%), Positives = 134/312 (42%), Gaps = 25/312 (8%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR------R 79
             ER  S+ TL+       +F+ + +     +  I    +++   + ++           
Sbjct: 42  RRERNWSETTLKVQTHHGYRFICWAS-----ERGIHHAAEVTRPVLESWQRHLWQYRKAN 96

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLV 138
            + +  R+ + +L  ++ + ++L K+ +   +   ++   ++   LPR  L+ +Q   +V
Sbjct: 97  GEPLSPRTQRTALQPLQVWFRWLAKQNLILANPAADLELPRQEKHLPRTILSVEQVEGIV 156

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197
           +   L+T         R+ A+L LL+  G+R  E   L   +    +  L I QGKG + 
Sbjct: 157 NLCDLNT-----LQGMRDRALLELLWSTGIRRGEVARLETYSADFSRKILTIVQGKGKQD 211

Query: 198 RIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLG 255
           R++P+       +  Y      + L       LF  + G   L        +    R  G
Sbjct: 212 RVIPVGERALWWLRHYLHKVRPEVLVSPDCKALFLAMDGVAGLTANGITHAVVPYLRAAG 271

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + H  RH+ AT +L NG DLR IQ++LGH  + +TQIYT V+ +     +  ++ 
Sbjct: 272 IEKG-SCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIR----ALQAVHA 326

Query: 316 QTHPSITQKDKK 327
            THP+   +  K
Sbjct: 327 STHPAEQTEPDK 338


>gi|212696176|ref|ZP_03304304.1| hypothetical protein ANHYDRO_00712 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676805|gb|EEB36412.1| hypothetical protein ANHYDRO_00712 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 330

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 72/319 (22%), Positives = 136/319 (42%), Gaps = 29/319 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL--------------AFYTEEKITIQTI 63
             ++L  L+  R LS+ T+  Y  D   F+ +                   +E I I  I
Sbjct: 9   LDDYLSYLKSIRALSEKTISEYRYDLINFIYYQILRKVYYNDKQNLNKDIEDENININKI 68

Query: 64  ------RQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILN 115
                   ++  ++ ++IS    +      +  R +S ++SF KYL +  ++   +    
Sbjct: 69  FNKSFISDINIQDMYSYISYLDNELNDNASTRSRKISALRSFYKYLHQEIEMIDNNITEK 128

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +RN K     P              +      + +++  R+ AI++     G+R+SE +S
Sbjct: 129 LRNPKIQKRQPVY---LTLSETELLLETINEEKNEFLRNRDMAIVFTFLTTGMRLSELVS 185

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           +   +I DD  T+   GKG+K R + L  +    I  Y  +    L       LF   R 
Sbjct: 186 VDLNDIKDDHFTII--GKGNKERTIYLTKNCIDLIDNYIMIRKNYLKDIKINALFISTRK 243

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLS 293
           K ++    Q  + +  +  G      + H LRH+ AT +   G  D+R+++ +LGH  +S
Sbjct: 244 KRISNRAVQSTVDKYLKKAGFDTRVYSTHKLRHTAATLMYKYGNVDIRALKDVLGHESVS 303

Query: 294 TTQIYTNVNSKNGGDWMME 312
           TTQIYT++++++    + +
Sbjct: 304 TTQIYTHLDNEDLKRAVNK 322


>gi|253990782|ref|YP_003042138.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253990786|ref|YP_003042142.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211639116|emb|CAR67728.1| Similar to integrase/recombinase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211639122|emb|CAR67734.1| Phage integrase [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253782232|emb|CAQ85396.1| similar to phage integrase/recombinase [Photorhabdus asymbiotica]
 gi|253782236|emb|CAQ85400.1| similar to phage integrase/recombinase [Photorhabdus asymbiotica]
          Length = 376

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 71/309 (22%), Positives = 132/309 (42%), Gaps = 18/309 (5%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT---QK 82
             ER  S+ TL+     T +F+++             I +      + ++ + R    + 
Sbjct: 42  RQERNWSETTLKVQTHHTYRFILWATERGL--YYAADITRPILERYQRYLYQYRKTNGEP 99

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLVDNV 141
           +  R+ +  L  +K + K+L K+ +   +   ++   +    LPR  L   +   ++   
Sbjct: 100 LSTRTQRTQLEPLKVWFKWLTKQNLILANPAADLELPRLEKHLPRYILTIDETEQIL--- 156

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV 200
                  T     R+ A++ LL+  G+R  E   L   ++   + T+ I+ GKG+K R++
Sbjct: 157 --AQPDLTTLQGVRDRALMELLWSTGMRRGELTRLDVYSVDGSRKTVTIRQGKGNKDRVL 214

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPL 258
           PL       +  Y       L +N  +  LF  + G   L        +      +G+  
Sbjct: 215 PLGERALSWLQRYQQQVRPQLIVNPDVKALFVAMDGLDGLQANGISNLVTAYINAVGIEK 274

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H  RH+ AT +L NG DLR IQ++LGH  + +TQ+YT V+ +     +  ++  TH
Sbjct: 275 KGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIR----ALQAVHASTH 330

Query: 319 PSITQKDKK 327
           P+    D+K
Sbjct: 331 PAEQMADEK 339


>gi|197344628|gb|ACH69660.1| phage integrase [uncultured bacterium]
          Length = 291

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 125/295 (42%), Gaps = 26/295 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ  L ++ + R L+  T  +Y    R    +L          ++    S  ++R F   
Sbjct: 12  RQRMLDDMRM-RNLAPKTQSAYIRAVRSLTRYLR---------RSPDTASPEDLRLFQLH 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    SL  +L+G+K F     +R       +  MR ++    LP  L++++   L
Sbjct: 62  MVDAGTSAVSLNATLTGLKFFFDVTLER----SDAMAKMRPVRTPRRLPVVLSQEEVSRL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
           +                +    L + YG GLR+ E + L   +I   + TLR+ QGKG K
Sbjct: 118 I----------AAAPSIKYQTALSVAYGAGLRVGEIVRLRVADIDSQRMTLRVDQGKGRK 167

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLG 255
            R   L P + + +  ++     +  +     LF G    +P++     R + +     G
Sbjct: 168 DRYAILPPLLLQRLRAWWKAAHAEGAIRADGWLFPGRDPVQPMSARQLNRVVHEAAAAAG 227

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           +      HTLRHSFATHLL    D+R IQ +LGH +L TT +Y  V ++   + +
Sbjct: 228 IGKRVAMHTLRHSFATHLLEQKVDIRVIQVLLGHKKLETTSMYAQVATEVLREVI 282


>gi|225377377|ref|ZP_03754598.1| hypothetical protein ROSEINA2194_03025 [Roseburia inulinivorans DSM
           16841]
 gi|225210778|gb|EEG93132.1| hypothetical protein ROSEINA2194_03025 [Roseburia inulinivorans DSM
           16841]
          Length = 340

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 75/306 (24%), Positives = 130/306 (42%), Gaps = 21/306 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR- 79
           + + L I+R LS  ++ +Y    R  L+F       K  + T+  L+  +I  F+   + 
Sbjct: 16  FTEYLPIQRNLSPNSIATYRDTFRLLLLFYDTEKHIKPNLLTLDMLNVQQIEDFMLWLKK 75

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLK-----KRKITTESNILNMRNLKKSNSLPRALNEKQA 134
            +  G  +  + L  +KSF +YL+           E+  L +R +K+     + L     
Sbjct: 76  ERNCGASTCNQRLGALKSFFRYLQFALPDCALQCQEN--LAIRPMKQPEPGLKYLTIDGI 133

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQGK 193
             L++               R+ AIL L+Y  G R+ E   +   +I     +T+RI GK
Sbjct: 134 KLLLEQ-----PDIKTKYGRRDLAILSLMYDTGARVQEIADIKIVHIRFSAPATIRITGK 188

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GDK R+VPLL      + +Y      D   N    LF+   G+ L+       + +    
Sbjct: 189 GDKTRVVPLLSRTEDILKQYIKDFKIDAGGN-DAYLFQNRSGQQLSRFGISYILTKYADM 247

Query: 254 LG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                   +P   + H +RHS A HLL    +L  I+ +LGH  ++TT+IY   ++    
Sbjct: 248 ARKVHPELIPEKLSPHCIRHSKAMHLLQANVNLVYIRDLLGHSSVTTTEIYARADTTLKR 307

Query: 308 DWMMEI 313
           + + + 
Sbjct: 308 EALEKA 313


>gi|254449549|ref|ZP_05062986.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198263955|gb|EDY88225.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 320

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 72/279 (25%), Positives = 127/279 (45%), Gaps = 27/279 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R L   +  S+    ++F  +L          ++    +  +++ F        +   + 
Sbjct: 39  RNLGPASQSSHLRACKRFAAWLG---------RSPETATPDDVKYFQQYLVESGVSICTR 89

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            ++++G+K   +   +R       +  + +LK+   +P  L++K+   ++          
Sbjct: 90  NQTMTGVKFLFRVTLRRH----DLVAEIFHLKEPVKIPLVLSKKEIKRILAM-------- 137

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR 207
                 +   +L L YGCG+R  E + L   +I  DQ  +RI Q KG K R V L   + 
Sbjct: 138 --APSLKARVMLSLAYGCGMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRNVMLPSDIL 195

Query: 208 KAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             + +++   P   + ++  P   LF G R K L+     R  +Q  +  G+    T HT
Sbjct: 196 GLLRQWWKERPTGQDRDVPAPERNLFPGYRSKHLSSRQISRLFKQTAQEAGITKPVTLHT 255

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           LRHSFATHLL  G D+R IQ++LGH +L+TT  Y +V +
Sbjct: 256 LRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVAT 294


>gi|254455124|ref|ZP_05068559.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198263534|gb|EDY87806.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 320

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 75/279 (26%), Positives = 130/279 (46%), Gaps = 27/279 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R L   +  S+    ++F  +L          ++    +  +++ F        +   + 
Sbjct: 39  RNLGPASQSSHLRACKRFAAWLG---------RSPETATPDDVKYFQQYLIESGVSICTR 89

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            ++++G+K  L+   +R       +  + +LK+   +P  L++K+   ++          
Sbjct: 90  NQTMTGVKFLLRVTLRRH----DLVAEIFHLKEPVKVPLVLSKKEIKRILAM-------- 137

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR 207
                 +   +L L YGCG+R  E + L   +I  DQ  +RI Q KG K RIV L   + 
Sbjct: 138 --APSLKARVMLSLAYGCGMRAGEVVRLKVGDIDSDQGIIRIVQSKGRKDRIVMLPVDIL 195

Query: 208 KAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             + +++   P   + ++  P   LF G RGK L+     R  ++  R  G+    T HT
Sbjct: 196 SLLRDWWKERPTGQDKDVPAPERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHT 255

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           LRHSFATHLL  G D+R IQ++LGH +L+TT  Y +V +
Sbjct: 256 LRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVAT 294


>gi|139439759|ref|ZP_01773150.1| Hypothetical protein COLAER_02181 [Collinsella aerofaciens ATCC
           25986]
 gi|133774909|gb|EBA38729.1| Hypothetical protein COLAER_02181 [Collinsella aerofaciens ATCC
           25986]
          Length = 220

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 104/227 (45%), Gaps = 17/227 (7%)

Query: 102 LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
           +    I     +  + + K    LP  L  +Q   L+      T   +     R++A+L 
Sbjct: 1   MAAEGIVEGDAVSAIASPKLPRDLPGVLTTQQVEALL-----KTPDTSTPAGLRDAAMLE 55

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           LLY  G RISE  +L  ++I   + TLR+ GKG K RIVPL     +A   Y +    +L
Sbjct: 56  LLYASGARISELAALNVESIGWSERTLRLWGKGSKERIVPLYRRALEATRLYIEEGRPEL 115

Query: 222 NLNIQ--------LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
               +         PL    RG  ++  + +R    L    G+P     H +RH+FAT L
Sbjct: 116 LAQAKRRDPATGPHPLLISARGNRMSAAMLRRRFHTLATLAGIPADIAPHAMRHTFATDL 175

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           L  G DLRS+Q +LGH  LSTTQIYT++      D +     Q HP 
Sbjct: 176 LEGGADLRSVQELLGHASLSTTQIYTHLTP----DRLKRAVAQAHPR 218


>gi|308069238|ref|YP_003870843.1| Site-specific recombinase XerC [Paenibacillus polymyxa E681]
 gi|305858517|gb|ADM70305.1| Site-specific recombinase XerC [Paenibacillus polymyxa E681]
          Length = 318

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 75/313 (23%), Positives = 139/313 (44%), Gaps = 24/313 (7%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E +     +E + +L  ++ + G +  T ++Y  D +QFL  L          + + Q+ 
Sbjct: 14  EDIDEIYAEELEAFLIWMK-DGGYTIHTQKNYMGDVKQFLRTLRE--------KPLDQVK 64

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLP 126
              + +++SK R    GD +  R  + + SF K L++ ++ + +    ++  K     +P
Sbjct: 65  KIHVMSYLSKAREGGAGDSTRNRKHAAVNSFFKALQEFELCSTNPAAGIKKAKTEKNRMP 124

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             L+EK     +  V    ++        N AI  L+   GLR+ E  SL   +   ++ 
Sbjct: 125 VYLDEKDIHPFLLAVEGKYANR-------NMAIFLLMVYMGLRVGEVHSLNVSDYSRERR 177

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           TL + GKG K R +P+  +V   +    +          +  +F   +G+ L     Q+ 
Sbjct: 178 TLDVFGKGRKWRTLPVPEAVCDFVEHALEERLTPWRGK-EDAMFVSQKGRRLAVRTIQQI 236

Query: 247 IRQLRRYLGLPLST------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             +         S       ++H LRH+FAT LL  G DLR++Q +LGH  + TT +YT+
Sbjct: 237 ATETFERFQQDKSIERREAYSSHKLRHTFATMLLRKGADLRTVQELLGHSSIQTTTVYTH 296

Query: 301 VNSKNGGDWMMEI 313
           V ++     M ++
Sbjct: 297 VTNREKEKAMDKL 309


>gi|186471361|ref|YP_001862679.1| integrase family protein [Burkholderia phymatum STM815]
 gi|186474500|ref|YP_001863471.1| integrase family protein [Burkholderia phymatum STM815]
 gi|186474622|ref|YP_001863593.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184197670|gb|ACC75633.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198459|gb|ACC76421.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198581|gb|ACC76543.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 292

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 80/289 (27%), Positives = 131/289 (45%), Gaps = 33/289 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ  L +++I R L++ T +SY      F              ++   L   EIRA++  
Sbjct: 5   RQRMLHDMQI-RNLAENTQKSYLIQVSSFARHFR---------RSPELLGPEEIRAWLIY 54

Query: 78  RRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            R + K+   SL  ++  ++   +   KR  + E         +K   LP  L+ ++  T
Sbjct: 55  LREERKLAPASLSPAIGALRFLYRVTLKRDWSDED----FPLPRKPVRLPVVLSLEEITT 110

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195
             D++             ++  IL + Y  GLR+SE + L   +I   +  +R+ QGK  
Sbjct: 111 FFDSI----------PSLKHRTILMVAYAAGLRVSEVVHLKVTDIDSKRMVIRVNQGKNR 160

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYL 254
           K R V L P + + +  Y+       + + +  LF G I G P+  G   R     R+  
Sbjct: 161 KDRYVMLSPRLLEILRTYWQ------DAHPRGWLFPGDIPGHPITRGAVSRICALARQRC 214

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           G+    T H+LRH+FATHLL  G D+R IQ ++GH  L+TT  Y  + +
Sbjct: 215 GIRKPITPHSLRHAFATHLLEAGTDVRRIQLLMGHRSLATTSRYLRIAT 263


>gi|237736957|ref|ZP_04567438.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817]
 gi|229420819|gb|EEO35866.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817]
          Length = 292

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 123/294 (41%), Gaps = 11/294 (3%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           + E+ ++ + K+ +++L   E     S  T++S + D  Q   +L    +    +     
Sbjct: 1   MVEMANWNIEKDIKDFLYFEEFGNNKSPNTIKSMKKDLFQLAEYLNEIEK----VDNCMA 56

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +    IR FI   +   I  R++ R LS ++SF KYL + K   +S +  + +       
Sbjct: 57  IDSVMIRGFIINLQENGITKRTINRKLSSLRSFFKYLVREKRINQSPVEVIASPSFYTQK 116

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P  L  ++   L + + L  ++       R+  IL LLY  G+   E L +       D+
Sbjct: 117 PDILTLEEINKLREVISLKNAN-----GLRDRLILELLYSSGITSVEMLGVGEGVFDLDK 171

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQ 244
             L +   G   R+V      R+    Y                LF       L+    +
Sbjct: 172 RELYV-SNGKSRRVVFFSERTREFFKRYIKAKKEKYKEKYNPDILFVNGSATRLSDRSLR 230

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           R I +     G+    + ++ RH+FA H+LS+G D+  ++ ++GH  L +T++Y
Sbjct: 231 RIIDRYAVKAGIEREISPYSFRHTFAVHMLSHGMDILYLKELMGHVTLESTKVY 284


>gi|89894317|ref|YP_517804.1| hypothetical protein DSY1571 [Desulfitobacterium hafniense Y51]
 gi|219668726|ref|YP_002459161.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
 gi|89333765|dbj|BAE83360.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538986|gb|ACL20725.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
          Length = 327

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 80/306 (26%), Positives = 134/306 (43%), Gaps = 18/306 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY------TEEKITIQTIRQLSYTEIRAF 74
           ++ +L +    S  T ++Y  +   FL F+  Y      +   +TI  ++Q+ +T++ A+
Sbjct: 16  YINHLGVI-NRSPHTQKAYAQELFLFLKFICDYKPGFPPSPSSLTIGHLQQIQHTDVEAY 74

Query: 75  ISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++  RTQ K G R+L R  + IKSF +YL +  +  +   + +  + ++   P+AL  +Q
Sbjct: 75  LNWARTQRKNGVRALARKQAAIKSFYRYLLREDLILKDITIKLNPISQNQKAPKALEPEQ 134

Query: 134 ALTLVDNVLLHTSHETKWIDAR------NSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
              LVD +   T      +         + AI     G GLR+SE   L  Q+I  ++  
Sbjct: 135 IADLVDIIETGTGLSEGQLKYHLYTEKRDYAIFLTFIGTGLRLSELYGLNLQSIDFNKGC 194

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
             +  KG+K   +     V  AI +Y         L     LF  I+G  ++    Q  I
Sbjct: 195 FAVIRKGNKETNIYFNTEVATAIQDYIKNERPRYMLQHTEALFLSIQGNRMSKRAIQDLI 254

Query: 248 RQLRRYL----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           ++    L          +AH LR +FAT LL    +L  +Q  LGH    TT+IY  V  
Sbjct: 255 KKYMAILQNFGHNTEGYSAHKLRSTFATLLLRETENLAIVQDALGHSDPRTTRIYAKVLD 314

Query: 304 KNGGDW 309
           +     
Sbjct: 315 EQLRRA 320


>gi|37527448|ref|NP_930792.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37527457|ref|NP_930801.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36786883|emb|CAE15952.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36786892|emb|CAE15961.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 376

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 71/309 (22%), Positives = 131/309 (42%), Gaps = 18/309 (5%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT---QK 82
             ER  S+ TL+     T  F+++             I +      + ++ + R    + 
Sbjct: 42  RQERNWSESTLKVQTHHTYHFILWATERGL--YYAADITRPILERYQRYLYQYRKTNGEP 99

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLVDNV 141
           +  R+ +  L  +K + K+L K+ +   +   ++   +    LPR  L   +   ++   
Sbjct: 100 LSTRTQRTQLEPLKVWFKWLTKQNLILANPAADIELPRLEKHLPRYILTIDETEQIL--- 156

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV 200
                  T     R+ A++ LL+  G+R  E   L   ++   + T+ I+ GKG+K R++
Sbjct: 157 --AQPDLTTLQGVRDRALMELLWSTGMRRGELTRLDVYSVDGKRKTVTIRQGKGNKDRVL 214

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPL 258
           PL       +  Y       L +N  +  LF  + G   L        +      +G+  
Sbjct: 215 PLGERALSWLQRYQQQVRPQLIVNPDVKALFVAMDGLDGLQANGISNLVTAYINAVGIEK 274

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H  RH+ AT +L NG DLR IQ++LGH  + +TQ+YT V+ +     +  ++  TH
Sbjct: 275 KGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIR----ALQAVHASTH 330

Query: 319 PSITQKDKK 327
           P+    D+K
Sbjct: 331 PAEQMADEK 339


>gi|255280908|ref|ZP_05345463.1| putative tyrosine recombinase XerC [Bryantella formatexigens DSM
           14469]
 gi|255268356|gb|EET61561.1| putative tyrosine recombinase XerC [Bryantella formatexigens DSM
           14469]
          Length = 352

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 60/306 (19%), Positives = 123/306 (40%), Gaps = 23/306 (7%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEE-------KITIQTIRQLSYTEIRAFISKRRT---- 80
           S  T  SY  D R F  FL              IT+  + ++   +I  ++   +     
Sbjct: 43  STRTRISYAYDIRVFFQFLLEENPSLRGKEMTDITLDILDKIKPVDIEEYLEYLKVYQSE 102

Query: 81  ---QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +  G+R+LKR +  ++ F  Y  KR++   +  L +   K  +     L+  +  +L
Sbjct: 103 DGLKTNGERALKRKMVALRGFYAYYFKREMIKTNPTLLVDMPKIHDKAIVRLDTDETASL 162

Query: 138 VDNVLLHTSHET-------KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           +D +       +       +    R+ A++ LL G G+R+SE + L   ++    + +++
Sbjct: 163 LDYIEHAGDSLSGQKKVYWEKTKRRDLALVTLLLGTGIRVSECVGLDIGDVDFKNNGIKV 222

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
             KG    +V     V KA+ +Y +           +  LF   + K +     +  +++
Sbjct: 223 VRKGGNEMVVYFGDEVEKALRDYLEERCGITPVAGSENALFLSTQRKRIGVQAVENLVKK 282

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
             R +      T H LR ++ T L     D+  +  +LGH  ++TT + Y  ++ +    
Sbjct: 283 YARQITTTKKITPHKLRSTYGTSLYQETNDIYLVADVLGHKDVNTTKKHYAAMDDQRRRS 342

Query: 309 WMMEIY 314
               ++
Sbjct: 343 AASAVH 348


>gi|264678575|ref|YP_003278482.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2]
 gi|262209088|gb|ACY33186.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2]
          Length = 333

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 77/341 (22%), Positives = 141/341 (41%), Gaps = 66/341 (19%)

Query: 1   MEGNN--LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI 58
           M+ +   LP + S ++L++ +  ++ L      S  T Q+Y    R F+ F         
Sbjct: 1   MKTSTAPLPPLRSVKVLEQLRERIRCL----YYSLRTEQAYVHRVRTFIRFH-------- 48

Query: 59  TIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
            ++    L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  + 
Sbjct: 49  GVRHPATLGSSEVEAFLSWLANERKVSASTHRQALAALLFFYGKVLCADL---PWLQEIG 105

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             + S  LP  L  ++ + +             +++  +     LLYG G+RISE L L 
Sbjct: 106 RPRLSRRLPVVLTPEEVVRI-----------PGFLEGVHRLFAQLLYGTGMRISEGLQLW 154

Query: 178 PQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------ 212
            +++  D  T+ ++ GKG K R + L  S+   + E                        
Sbjct: 155 VKDLDFDHGTIIVREGKGSKDRALMLPESLAPGLREQLARARAWWLKDQAEGRSGVALPD 214

Query: 213 ------------YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
                       +     F  + +   P    +R   +    FQR  ++     G+    
Sbjct: 215 ALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVDEAGVAKPA 274

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T HTLRHSFA  LL +G D+R++Q +LGH  +STT IYT++
Sbjct: 275 TPHTLRHSFAAALLRSGYDIRTVQDLLGHSDISTTMIYTHM 315


>gi|94310217|ref|YP_583427.1| phage integrase [Cupriavidus metallidurans CH34]
 gi|93354069|gb|ABF08158.1| tyrosine-based site-specific recombinase [Cupriavidus metallidurans
           CH34]
          Length = 331

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 78/322 (24%), Positives = 128/322 (39%), Gaps = 27/322 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M   +LP +V       ++ + Q L  ++GLS  T+ SY    R  L F   +     + 
Sbjct: 1   MSAASLPALV-------QRFFTQRLLEQQGLSSHTVASYRDTFRLLLAFATKHIGRAPSK 53

Query: 61  QTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRK---ITTESNILNM 116
             I     + I  F+      +    R+    L+ + +F +++   +         IL +
Sbjct: 54  LRIEDFDVSLIEEFLQHLEHGRGNSVRTRNTRLAAVHAFFRFVAVSEPALFLLCQRILAI 113

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
            + +  +     L E +A  LV            WI  R+  +L +    GLR SE  +L
Sbjct: 114 PSKRCEHGPVEFLTESEAAALV-----GAPDVRNWIGNRDRTLLLVAVQTGLRNSELTAL 168

Query: 177 TPQNIMDDQS-TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
             Q++       +R  GKG K+R  PL P V   + ++    P +       P+F   RG
Sbjct: 169 RRQDVALGTGAHVRCLGKGRKMRCTPLRPDVVAVLKQWLLYQPGE----PGDPVFPSSRG 224

Query: 236 KPLNPGVFQRYIRQLRRYLGL------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
             L+    Q+ + +      L        S T HTLRH+ A  L+ +G DL  I   LGH
Sbjct: 225 GHLSADALQQLVSRNAETARLSCPSLKKKSITPHTLRHTAAMSLMHHGVDLTVIALWLGH 284

Query: 290 FRLSTTQIYTNVNSKNGGDWMM 311
               TTQIY + + +     + 
Sbjct: 285 ESSETTQIYLHADMQLKERALA 306


>gi|210612745|ref|ZP_03289460.1| hypothetical protein CLONEX_01662 [Clostridium nexile DSM 1787]
 gi|210151438|gb|EEA82446.1| hypothetical protein CLONEX_01662 [Clostridium nexile DSM 1787]
          Length = 356

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 66/322 (20%), Positives = 131/322 (40%), Gaps = 33/322 (10%)

Query: 32  SKLTLQSYECDTRQFLIFL-------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI- 83
           S  T  SY  D R F  FL         YT  + T+Q + ++   +I  ++   +  K  
Sbjct: 43  SAKTRISYAYDIRVFFHFLIENNPIYHDYTTTQFTLQDLERVEPIDIEEYLEYLKVYKAD 102

Query: 84  -------GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                  G++ L R  S ++SF +Y  + ++  ++  + +   K  +     L+  +   
Sbjct: 103 DNQVITNGEKGLARKFSSLRSFYRYFYRHQMIEKNPTIFVDMPKLHDKAIIRLDIDEVAL 162

Query: 137 LVDNVLLHTSHET-------KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           L+D V       T       +    R+ AIL LL G G+R+SE + L   +I    + ++
Sbjct: 163 LLDYVENCGKELTGQKKVYYEKTKTRDLAILTLLLGTGIRVSECVGLDINDIDFKNNGIK 222

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYI 247
           +  KG    ++     VR A+  Y +          + +  LF   + K +     +  +
Sbjct: 223 VTRKGGSEMVIYFGEEVRNALENYLETTRASATPLPDHENALFLSTQRKRMGVQAIENMV 282

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNG 306
           ++  + +      T H LR ++ T L    GD+  +  +LGH  ++TT + Y  ++    
Sbjct: 283 KKYAKQVTPNKKITPHKLRSTYGTSLYKETGDIYLVADVLGHKDVNTTKKHYAAIDDMRR 342

Query: 307 GDWMMEIYDQTHPSITQKDKKN 328
                    Q   ++  ++++N
Sbjct: 343 R--------QAASAVKLREERN 356


>gi|253575352|ref|ZP_04852690.1| phage integrase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845349|gb|EES73359.1| phage integrase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 380

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 77/288 (26%), Positives = 136/288 (47%), Gaps = 28/288 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-------LSYTEIRAFISKRRTQ 81
           +G S  T ++Y    R++L  LA + + K +  T++        +  +  + +  +   Q
Sbjct: 96  KGYSLKTSKAYRGHVRRYLQNLADHLKMK-SPGTLKDEKMTSAIIDSSRTQQYALQLLEQ 154

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                 + +++S ++ FL     ++ + +   +     +K   LP  L+E++ L ++   
Sbjct: 155 GHSPAYVNQAISALR-FLAVEVFKQPSEQ---MKYIRPQKEKKLPYVLSEQEVLRVIQA- 209

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV 200
                      + ++  +LYL Y  GLR+SE + L   +I  ++  LR++ GKG K R  
Sbjct: 210 ---------PTNLKHRTMLYLAYASGLRVSEVVRLKVTDIDPERGILRVRQGKGKKDRHT 260

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLS 259
            L  +    I +Y +       L+  + LF G      L+    Q+  ++  +  G+   
Sbjct: 261 LLSQTAWDMIQKYVEA----ERLSNSMWLFPGQHSGSHLHERSLQKVFQEALQTSGIRKQ 316

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
              H LRHSFATHLL NG DLR IQ +LGH   STT+ YT+V++KN  
Sbjct: 317 VGIHVLRHSFATHLLENGTDLRYIQELLGHANPSTTERYTHVSTKNLK 364


>gi|148243976|ref|YP_001220215.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|146400539|gb|ABQ29073.1| phage integrase family protein [Acidiphilium cryptum JF-5]
          Length = 302

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 68/284 (23%), Positives = 127/284 (44%), Gaps = 25/284 (8%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R  S+ T ++Y  D  +F  FL          ++    +  ++R F  ++R   +   ++
Sbjct: 24  RRFSRETHRNYLRDVGRFATFLG---------RSPDTATAEDLRRFQIEQRDAGVPTPTM 74

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
              +S ++ F      R          +       +LP  L+  +   L++         
Sbjct: 75  NSIVSALRFFFTQTIDR----PDLARKLIRTPHPRNLPVVLSRDEVARLLNAT------- 123

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR 207
                 ++ A L + YG G+R++E  +L   +I  ++  +R+ +GKG + R   L   + 
Sbjct: 124 ---TCLKHQAALSVAYGAGMRVAEVAALKVSDIDSERMLIRVERGKGGRYRNAILPADLL 180

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
             + E++ +      ++ Q  LF G +  KP++     R + +  R   +      HTLR
Sbjct: 181 ILLREWWKIGHQQGVMHAQGWLFPGQQVTKPISTRQLHRVVVEAARAAEITKRVGPHTLR 240

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           HSFATHLL +G D+R IQ++LGH  L+TT +YT V ++     +
Sbjct: 241 HSFATHLLEDGVDIRVIQALLGHSHLNTTALYTKVATRTVRAVI 284


>gi|218673354|ref|ZP_03523023.1| site-specific tyrosine recombinase XerC [Rhizobium etli GR56]
          Length = 199

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 91/199 (45%), Positives = 130/199 (65%), Gaps = 2/199 (1%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N L  I    L+ ER  WL+NL  ER LS+ TL +YE DTRQFL FL  +    +T+  I
Sbjct: 2   NELLVIADPRLMAERAAWLENLARERRLSEHTLDAYERDTRQFLTFLTGHLAGPVTLSDI 61

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           R+L   + RAF++ RR Q  G RSL R+L+G++S L++L+K+ +   +    +R+ K+  
Sbjct: 62  RELRPADFRAFLAARRKQGSGARSLGRNLAGLRSLLRHLEKKGLVNAAGAAAIRSPKQPK 121

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           SLP+ L++ QA+T+V N      H+  WI AR++A++ LLYGCGLRISEAL L P ++  
Sbjct: 122 SLPKPLSDTQAITVVSNE--AQLHDEPWIAARDAAVMTLLYGCGLRISEALDLVPADLPT 179

Query: 184 DQSTLRIQGKGDKIRIVPL 202
             +TLRI GKG+K R+VPL
Sbjct: 180 GAATLRITGKGNKTRLVPL 198


>gi|50122313|ref|YP_051480.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|49612839|emb|CAG76289.1| probable integrase/recombinase protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 340

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 136/314 (43%), Gaps = 25/314 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L +L      S  T++ Y    R F+ +      E+  +    Q+S   + A+     
Sbjct: 27  AYLAHLTAT-NHSPRTVEGYGERLRPFVTWC-----EERGLTQAAQVSLAVLEAYQRHLH 80

Query: 80  TQKIGD-RSLKR-----SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEK 132
             +  D + L +      L+ I+   ++L +R     +    M   K    LP + L+E+
Sbjct: 81  GYRKADGKPLAQGGQLNRLTSIRMLFRWLLQRHHILYNPAEQMTLPKAEKRLPAQILSEE 140

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ- 191
           +   ++D               RN A+L +L+  GLR SE   L   ++   +  L ++ 
Sbjct: 141 ETEAVMD-----AQDTETLTGLRNRAVLEMLWSTGLRRSELAGLMLDDVDVGRGVLVVRQ 195

Query: 192 GKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQ 249
           GKG+K R+VP+       +  Y D + P     +    LF  I GK L            
Sbjct: 196 GKGNKDRVVPVGLRALVWVQRYLDAVRPRLTTKHDSGALFVTIWGKTLGRATLTILAGSA 255

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           +R    L  +   H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V   +    
Sbjct: 256 IREQAHLKKAGACHVFRHSMATQMLENGADTRYIQAILGHEKLETTQIYTRVAIGH---- 311

Query: 310 MMEIYDQTHPSITQ 323
           + +++++THP+  +
Sbjct: 312 LKQVHEKTHPAERK 325


>gi|289806997|ref|ZP_06537626.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 232

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 105/238 (44%), Gaps = 12/238 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L  L +ER L++ TL +Y  D    + +L          +T+      +++  
Sbjct: 5   LARIEQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRG------KTLATAQADDLQTL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R        S  R LS ++ F ++L + K   +     + + K    LP+ L+E Q 
Sbjct: 59  LAERVEGGYKATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+   L+        ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG
Sbjct: 119 ERLLQAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173

Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           +K R+VPL       +  Y     P+ LN      LF   R + +    F   I+   
Sbjct: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYA 231


>gi|306821127|ref|ZP_07454743.1| integrase XerD [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304550820|gb|EFM38795.1| integrase XerD [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 329

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 91/329 (27%), Positives = 162/329 (49%), Gaps = 22/329 (6%)

Query: 1   MEGNNLPEIVSFELLKE----RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA-FYTE 55
           ME  +L E +  E  +E     +++L+ L +  G SK T+ SY  D + F  F       
Sbjct: 1   MEIKSLIEKIENEYDEEELAYIKSFLEAL-VSSGKSKNTISSYFRDLKVFFDFKKSNPLL 59

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           +K  ++ ++ ++ T   +++     ++    S+KR    +K FL+YL + +I  ++ I  
Sbjct: 60  KKYKLEKLKPINITMYYSYLVA--DKQNSAVSIKRKKYVLKLFLEYLFEMEILEKTPIPK 117

Query: 116 ----MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
                  +K ++ +P  L  ++   +  N  +   ++ ++I +RN  I+ L    GLRIS
Sbjct: 118 ESVIKSKIKNNSKIPTYLEIEEIQKI--NQSIRDLYDDEFIRSRNFFIINLFLHTGLRIS 175

Query: 172 EALSLTPQNIMDDQST--LRIQGKGDKIRIVPLL-PSVRKAI-----LEYYDLCPFDLNL 223
           E +SL  +++   + T  L + GKG+K RI+P+    + K +     L    L       
Sbjct: 176 ELVSLDFKDMEKTKKTDYLTVIGKGNKERIIPINVDELSKELGDEDNLIKVYLDDRKFIK 235

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
           +    LF   +G  L     Q  ++++  Y  +    T H LRH+FATH L NG +LR +
Sbjct: 236 SNTDALFISKKGGRLTQRYIQMELKKIIAYSNIDKRITPHKLRHTFATHFLKNGANLRIV 295

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           Q ILGH  +STTQIYT+ + ++  + M +
Sbjct: 296 QEILGHSSISTTQIYTHSDKQDLVNAMKK 324


>gi|217968717|ref|YP_002353951.1| integrase [Thauera sp. MZ1T]
 gi|217506044|gb|ACK53055.1| integrase family protein [Thauera sp. MZ1T]
          Length = 291

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 129/298 (43%), Gaps = 30/298 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ  L ++ + R L+  T  +Y     +F  +L          +     +  ++R +   
Sbjct: 12  RQRMLDDMRM-RKLTPKTQSAYIRAVCRFTRYLG---------RAPDSATVEDLRNYQLH 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    SL  ++SG+K F     +R       +  M+ ++    LP  L+ ++   L
Sbjct: 62  LVDTGTSPMSLNAAISGLKFFFDITLQRGEL----MARMQPVRLPQRLPVVLSREEVARL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
           +              + ++   L L Y  GLR SE +SL   ++   + TLR+ QGKG K
Sbjct: 118 IAAC----------NNLKHQTALSLAYATGLRASEVVSLKVSDVDSGRMTLRVEQGKGRK 167

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRRYLG 255
            R   L P + + +  ++ +      +     LF G+     L+P    R ++      G
Sbjct: 168 DRYAMLSPLLLERLRVWWRVARAQGKMLDGGWLFPGLNPIESLSPRQLNRAVQAAALAAG 227

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +    + HTLRH FATHLL    D+R IQ++LGH +L TT IYT V +    D + E+
Sbjct: 228 IDKRVSMHTLRHCFATHLLEQKVDIRIIQALLGHKKLDTTVIYTQVAT----DLLREV 281


>gi|116255003|ref|YP_770838.1| putative integrase/recombinase [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115259651|emb|CAK11632.1| putative integrase/recombinase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 288

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 79/297 (26%), Positives = 127/297 (42%), Gaps = 32/297 (10%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +   E+   R+  + ++ I R LS  T +SY     +F  +           ++  +L  
Sbjct: 1   MTMTEISPLRRRMIDDMTI-RNLSPATQRSYLHAVTKFSRYFG---------RSPDRLGL 50

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++RAF     +  +   +L +++  ++ F           E     +   +    LP  
Sbjct: 51  EDVRAFQVHLVSSGLSWPALNQTVCALRFFFGVTLGHGEIPE----RIAYARTPAKLPTI 106

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           LN  + +  ++ V             R    L   Y  GLR SEA+ L  ++I  ++  +
Sbjct: 107 LNGDEIVRFLEAV----------PSLRTRTALTTAYAAGLRASEAVHLKVRDIDGERGII 156

Query: 189 RI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRY 246
           R+  GKG K R V L   +   +  Y+ L         ++ LF G    KP++  V    
Sbjct: 157 RVEHGKGGKDRNVMLSAQLLAILRVYWRLA------RPEVWLFPGRDETKPIDVQVLYSA 210

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            R      G+    T HTLRHSFATHLL +G D+R IQ +LGH  LSTT  YT V++
Sbjct: 211 CRSACTAAGIDKRVTVHTLRHSFATHLLESGTDIRIIQVLLGHNNLSTTARYTKVSN 267


>gi|261406744|ref|YP_003242985.1| integrase family protein [Paenibacillus sp. Y412MC10]
 gi|261283207|gb|ACX65178.1| integrase family protein [Paenibacillus sp. Y412MC10]
          Length = 311

 Score =  182 bits (463), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 77/305 (25%), Positives = 139/305 (45%), Gaps = 24/305 (7%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +E + +L  ++ +R  +K T Q+Y  D + FL  L          + I +++  ++  ++
Sbjct: 12  REMKLFLSYMK-DREYAKDTQQAYLHDIKHFLNSLEG--------KPITEVTDIDVMYYL 62

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNEKQA 134
           ++ R    G R   R  S I+ F K + + K+ + +  +++   K      P  L +   
Sbjct: 63  TQVRESGAGARYRNRCQSAIRLFYKVMIRFKLASTNPAMDIEKAKVEKNRQPTYLQKP-- 120

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             ++D  L       +    R+  I+ L+   GLR+SE + L   ++  + S++ + GKG
Sbjct: 121 --ILDACLNGIEGRYR---IRDVTIIALMAYAGLRVSEIVKLNVTDVDMENSSIGVLGKG 175

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K R +PL   + K +  Y +      +       F     + ++  + Q    +    +
Sbjct: 176 SKWRYIPLPAELNKLLQMYLEERMAPRSSK-DNAFFVSQFRRRISKRMVQTIAEKTFAAM 234

Query: 255 GLPLS------TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                       +AH LRHSFAT LL NG DLR++Q +LGH  +STTQIYT+V  +    
Sbjct: 235 TEQFPQLSGQSLSAHKLRHSFATELLRNGADLRAVQELLGHEDISTTQIYTHVLDETKER 294

Query: 309 WMMEI 313
            M +I
Sbjct: 295 AMNKI 299


>gi|56421448|ref|YP_148766.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
 gi|56381290|dbj|BAD77198.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
          Length = 337

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 64/313 (20%), Positives = 139/313 (44%), Gaps = 21/313 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           + +   +  + ++++ E+ R L + T++ Y  +   F+  L     E      + + +  
Sbjct: 37  IEYTFEELLEIFIEDCEL-RNLREHTIKYYRSELNAFVKLLKEQEIE----LRVSEWTGE 91

Query: 70  EI-RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            I R  I   + + +   S+   L  +++F  +L+ R +   + + +++ L+    +   
Sbjct: 92  TIKRNVIMYMKEKGLKTVSINSRLRALRAFFNFLEGRNLIKSNPMKDIKLLRDRKRIVET 151

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
            + +Q   L     L T     ++  R+  I+ LL   G+R++E +S+   +I+ +Q  +
Sbjct: 152 FDNQQIKALFKACDLRT-----FVGLRDYTIMMLLLETGVRVNELVSIKTTDIIWEQKVI 206

Query: 189 RIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           RI+  KG   R VP+   +   + +Y  +            LF      PL+    Q  I
Sbjct: 207 RIRNTKGGFERFVPIQDKMINQLKKYIAVR----GSVDTDYLFITRDDTPLSKKQVQDRI 262

Query: 248 RQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           ++  +  G+  +  + HT RH+FA   + NG +   +Q+ILGH  L  T++Y N+     
Sbjct: 263 KEYGKKAGIKNVRCSPHTFRHTFAKLCVLNGANAFQLQAILGHTSLEMTKVYVNL----F 318

Query: 307 GDWMMEIYDQTHP 319
            + + + + +  P
Sbjct: 319 SNEVQQGHAKFSP 331


>gi|257413996|ref|ZP_04744923.2| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
 gi|257201563|gb|EEU99847.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
          Length = 368

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 58/304 (19%), Positives = 120/304 (39%), Gaps = 22/304 (7%)

Query: 32  SKLTLQSYECDTRQFLIFL-------AFYTEEKITIQTIRQLSYTEIRAFISKRR----- 79
           S  T  +Y  D   F  +L       A        I  + +++  +I  ++S  +     
Sbjct: 60  SSRTKIAYAYDIGCFFDYLHATNPVCAKMDITDFPISILNEITPMDIEEYLSYLKYYEKD 119

Query: 80  --TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                  +  LKR LS ++SF  Y  K  +  +   + +   K        L+  +   L
Sbjct: 120 GTEHTNDEGGLKRKLSALRSFYHYYYKNGLIEDDPTVKVDMPKIHEKNIIRLDVDEVAKL 179

Query: 138 VDNVLLHTSHETKWIDAR------NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           +D V    +   +           + A++ LL G G+R+SE + L  +++    + ++I 
Sbjct: 180 LDEVESGENLTARQQQYHEKTKIRDLAMMTLLLGTGIRVSECVGLDMEDVDFKNNGIKIH 239

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL 250
            KG    +V     VR+A+++Y          +  +  LF  ++ K ++    +  +++ 
Sbjct: 240 RKGGAEVVVYFGEEVRRALMDYMVERQKITAADGSINALFLSLQNKRISVRSVENMVKKY 299

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDW 309
            + +      T H LR ++ T L    GD+  +  +LGH  ++TT+  Y  +  +     
Sbjct: 300 SKLVTTLKHITPHKLRSTYGTSLYRETGDIYLVADVLGHKDVNTTRKHYAALEDERRRSA 359

Query: 310 MMEI 313
              +
Sbjct: 360 AKYV 363


>gi|254498879|ref|ZP_05111584.1| putative integrase/recombinase [Legionella drancourtii LLAP12]
 gi|254351864|gb|EET10694.1| putative integrase/recombinase [Legionella drancourtii LLAP12]
          Length = 335

 Score =  182 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 76/320 (23%), Positives = 126/320 (39%), Gaps = 17/320 (5%)

Query: 20  NWLQ-NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK- 77
            +L   L  +R LS  T+++Y       L F        I    + Q+    I AF+   
Sbjct: 12  RFLSNYLAGQRNLSPNTIKAYRDVFILLLRFCRDVKNIPIEKLQLEQVDVVLIEAFLDHI 71

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRK---ITTESNILNMRNLKKSNSLPRALNEKQA 134
            + +    R+L   L+ + +F +Y++      +     IL +   +        L++   
Sbjct: 72  EKDRHCTPRTLNHRLTTLHAFFRYIQVEDPLYLLQCQRILAIPLRRFVRPEVSYLSKDHL 131

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQGK 193
             L+        +  K    R+  +L  LY  G R+ E + LT  ++     + +RI GK
Sbjct: 132 AALL-----AQPNLGKPEGRRDVVLLSTLYDTGARVQELIDLTVGDVRLKTPAQVRILGK 186

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL--- 250
           G KIR+VPL+ +    +  Y       L      PLFR  +G  L        +++    
Sbjct: 187 GRKIRVVPLMDNTANLLQSYLHENNLLLPETFDYPLFRNNQGNKLTRVGVNYILQKYERL 246

Query: 251 RRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            R          + HTLRH+   HLL  G  L  I+  LGH  + TT+IY   N +    
Sbjct: 247 VREASPQYKQRISPHTLRHTKGMHLLQGGVSLDIIRDFLGHVDIKTTEIYARANLEMKRA 306

Query: 309 WMMEIYDQTHPSITQKDKKN 328
            + ++     P I    K+N
Sbjct: 307 AIEKVSTAPIPKI-PSWKEN 325


>gi|310765754|gb|ADP10704.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 345

 Score =  182 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 133/311 (42%), Gaps = 25/311 (8%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR------R 79
             ER  S+ TL+       +F+ + +     +  I     ++   +  +           
Sbjct: 42  RRERNWSENTLKVQTHHDYRFICWAS-----ERGIHHAADVTRPVLERWQRHLYHYRKGN 96

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLV 138
            + +  R+ + +L  ++ + ++L K+ +   +   ++   +    LPR  L+ +Q   +V
Sbjct: 97  GEPLSPRTQRTALQPLQVWFRWLAKQNLILANPAADLELPRLEKHLPRTILSVEQVEDIV 156

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197
           +   L+T         R+ A+L LL+  G+R  E   L   +    +  L I QGKG + 
Sbjct: 157 NRCDLNT-----LQGMRDRALLELLWSTGIRRGEVARLESWSADFSRKILTIVQGKGKQD 211

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLG 255
           R++P+       +  Y      ++  +     LF  + G   L        +    R  G
Sbjct: 212 RVIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVAGLTANGITHAVVPYLRAAG 271

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + H  RH+ AT +L NG DLR IQ++LGH  + +TQIYT V+ +     +  ++ 
Sbjct: 272 IEKG-SCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIR----ALQAVHA 326

Query: 316 QTHPSITQKDK 326
            THP+   +D+
Sbjct: 327 STHPAEQTEDE 337


>gi|50123203|ref|YP_052370.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|50123212|ref|YP_052379.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|49613729|emb|CAG77180.1| probable integrase/recombinase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613738|emb|CAG77189.1| probable integrase/recombinase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 350

 Score =  182 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 88/330 (26%), Positives = 147/330 (44%), Gaps = 30/330 (9%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +  +++L++L    G S  T +SY     + L F+A+   E   +    Q+S   +  
Sbjct: 21  LRQHTEHYLEHLSAA-GYSARTQESY---WERLLPFVAWC--EDRGLLHAPQVSLAVLEG 74

Query: 74  FISKRRTQK------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP- 126
           +    R  +      +   S    L+GI+   ++L KR +   +    +   K+   LP 
Sbjct: 75  YQRWLRGYRKADGHPLTAGSQLNRLTGIRMLWRWLLKRHVILYNPAEMLTLPKEEKRLPA 134

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L+ ++        +L        +  RN  IL +L+  G+R +EA+SL   +I   + 
Sbjct: 135 QVLSVEET-----GGVLQAMESGTVLGLRNRVILEVLWSSGVRRAEAVSLMLSDIDLSRG 189

Query: 187 TLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQ 244
            + ++ GKG+K R+VPL     K +  Y +     L        LF    G  L      
Sbjct: 190 VMMVRQGKGNKDRVVPLGERACKWLARYLNHARPALARRYDSGHLFISHNGTGLARVTLT 249

Query: 245 RYIRQLRRYLG-LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +   +  R  G L      H  RHS AT +L NG D R IQ+ILGH +L TTQIYT V  
Sbjct: 250 KMAGKAIRETGHLDKPGACHVFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAI 309

Query: 304 KNGGDWMMEIYDQTHPS-----ITQKDKKN 328
            +    + ++++QTHP+       +K K++
Sbjct: 310 SH----LQKVHEQTHPAERKQTARRKKKRD 335


>gi|291538944|emb|CBL12055.1| Site-specific recombinase XerD [Roseburia intestinalis XB6B4]
          Length = 368

 Score =  182 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 58/304 (19%), Positives = 120/304 (39%), Gaps = 22/304 (7%)

Query: 32  SKLTLQSYECDTRQFLIFL-------AFYTEEKITIQTIRQLSYTEIRAFISKRR----- 79
           S  T  +Y  D   F  +L       A        I  + +++  +I  ++S  +     
Sbjct: 60  SSRTKIAYAYDIGCFFDYLHATNPVCAKMDITDFPISILNEITPMDIEEYLSYLKYYEKD 119

Query: 80  --TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                  +  LKR LS ++SF  Y  K  +  +   + +   K        L+  +   L
Sbjct: 120 GTEHTNDEGGLKRKLSALRSFYHYYYKNGLIEDDPTVKVDMPKIHEKNIIRLDVDEVAKL 179

Query: 138 VDNVLLHTSHETKWIDAR------NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           +D V    +   +           + A++ LL G G+R+SE + L  +++    + ++I 
Sbjct: 180 LDEVESGENLTARQQQYHEKTKIRDLAMMTLLLGTGIRVSECVGLDMEDVDFKNNGIKIH 239

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL 250
            KG    +V     VR+A+++Y          +  +  LF  ++ K ++    +  +++ 
Sbjct: 240 RKGGAEVVVYFGEEVRRALMDYMVERQKITAADGSINALFLSLQNKRISVRSVENMVKKY 299

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDW 309
            + +      T H LR ++ T L    GD+  +  +LGH  ++TT+  Y  +  +     
Sbjct: 300 SKLVTTLKHITPHKLRSTYGTSLYRETGDIYLVADVLGHKDVNTTRKHYAALEDERRRSA 359

Query: 310 MMEI 313
              +
Sbjct: 360 AKYV 363


>gi|134298247|ref|YP_001111743.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134050947|gb|ABO48918.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 304

 Score =  182 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 68/310 (21%), Positives = 145/310 (46%), Gaps = 24/310 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L   E  + LSK T++ Y+    + + +            +I  ++  + R ++  
Sbjct: 7   VKTFLMYQET-KNLSKRTIEWYQFTLNKLIDYCKENNI------SIESMTTPQARQYVFS 59

Query: 78  RRT------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
            +       +K  D  +   +  +K    YL + +   ++    ++ +K    +      
Sbjct: 60  LQKSISRTGKKYADNGINGYIRSVKIMFNYLFEDEYIEKNPFAKVKQIKTDKVIIETFEV 119

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           ++   +++       ++  + + R++ ++ +LY  G+RISEA++L   +I  D++  ++ 
Sbjct: 120 EEVKRMLNQF-----NKKVYTEFRDALLIQILYDTGIRISEAINLKISDIDTDKNMFKVF 174

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQL 250
           GKG K R+VP   S+++ IL+Y      +++    +  LF    G  L      R I ++
Sbjct: 175 GKGHKERMVPFGRSIKREILKYLPKRNKEVDKELDEGYLFSTRNGTALTIRNVHRKIVEV 234

Query: 251 RRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                +     +AHT RH+FA   L NGG+L S+Q+I+GH  LSTT+ Y ++ +++    
Sbjct: 235 GTKAKIKGKRLSAHTFRHTFAKTYLVNGGNLFSLQTIMGHNDLSTTRKYVHLLTED---- 290

Query: 310 MMEIYDQTHP 319
           + + + Q  P
Sbjct: 291 IQKQHRQFSP 300


>gi|37525093|ref|NP_928437.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37527552|ref|NP_930896.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36784519|emb|CAE13419.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36786987|emb|CAE16061.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 370

 Score =  182 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 71/309 (22%), Positives = 131/309 (42%), Gaps = 18/309 (5%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT---QK 82
             ER  S+ TL+     T  F+++             I +      + ++ + R    + 
Sbjct: 42  RQERNWSESTLKVQTHHTYHFILWATERGL--YYAADITRPILERYQRYLYQYRKTNGEP 99

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLVDNV 141
           +  R+ +  L  +K + K+L K+ +   +   ++   +    LPR  L   +   ++   
Sbjct: 100 LSTRTQRTQLEPLKVWFKWLTKQNLILANPAADIELPRLEKHLPRYILTIDETEQIL--- 156

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV 200
                  T     R+ A++ LL+  G+R  E   L   ++   + T+ I+ GKG+K R++
Sbjct: 157 --AQPDLTTLQGIRDRALMELLWSTGMRRGELTRLDVYSVDGKRKTVTIRQGKGNKDRVL 214

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPL 258
           PL       +  Y       L +N  +  LF  + G   L        +      +G+  
Sbjct: 215 PLGERALSWLQRYQQQVRPQLIVNPDVKALFVAMDGLDGLQANGISNLVTAYINAVGIEK 274

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H  RH+ AT +L NG DLR IQ++LGH  + +TQ+YT V+ +     +  ++  TH
Sbjct: 275 KGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIR----ALQAVHASTH 330

Query: 319 PSITQKDKK 327
           P+    D+K
Sbjct: 331 PAEQMADEK 339


>gi|16263337|ref|NP_436130.1| integrase/recombinase [Sinorhizobium meliloti 1021]
 gi|16263633|ref|NP_436426.1| Integrase/recombinase [Sinorhizobium meliloti 1021]
 gi|14524018|gb|AAK65542.1| integrase/recombinase [Sinorhizobium meliloti 1021]
 gi|14524343|gb|AAK65838.1| Integrase/recombinase [Sinorhizobium meliloti 1021]
          Length = 329

 Score =  182 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 73/310 (23%), Positives = 127/310 (40%), Gaps = 21/310 (6%)

Query: 13  ELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           +L +    +L ++L  ER  S  T  +Y    +  + F A    ++  +  I  +    I
Sbjct: 3   QLAQHLTAFLREHLPRERRASVHTCDAYAYSFQLLVTFAARRLSKRPCLLQIEDIDVPMI 62

Query: 72  RAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPR 127
            AF+     T+    RS    L+ +KSF +YL+ R        L +  +   K   +L  
Sbjct: 63  LAFLEHIEETRGNKARSRNARLAAVKSFFRYLEHRVPAVLDQALRVHAMPMKKIDEALVA 122

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-S 186
           +L+  +   L+     +          R+ A+L+L +  GLR+SE + LT         +
Sbjct: 123 SLSRTEVQALL-----NAPDRRSLSGIRDRAMLHLAFAGGLRVSELVGLTLDQFDGRSPA 177

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           ++ I GKG + R++PL      AI  +  + P     N    LF    G+ +    F+  
Sbjct: 178 SIHIIGKGRRERVLPLWQETAAAIRAWIAVRP----KNGDTALFLNNAGRMMTRSGFEYI 233

Query: 247 IRQLRRYLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           + +               S + H LRHS A H+L    D+R +   LGH  L +T+IY  
Sbjct: 234 LEKHAAAAVSVAPTLATKSISPHVLRHSCAMHMLQATRDIRKVALWLGHASLQSTEIYLR 293

Query: 301 VNSKNGGDWM 310
            +     + +
Sbjct: 294 ADPTEKLEML 303


>gi|303239112|ref|ZP_07325642.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302593450|gb|EFL63168.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 340

 Score =  182 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 70/322 (21%), Positives = 132/322 (40%), Gaps = 16/322 (4%)

Query: 9   IVSFELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           + S +       +L Q L   + +S  T+ SY    R FL +       KI   ++  + 
Sbjct: 1   MKSKDFAAYLTEFLSQYLPELKNVSSNTISSYCDTFRLFLEYCRDTEGMKIHKMSLCDIK 60

Query: 68  YTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRK---ITTESNILNMRNLKKSN 123
              + +F+      +K    +  + L+ I SF+++++ +    +     IL++   KK++
Sbjct: 61  PELVASFLEWLENERKNSISTRNQRLAAIHSFVRFVQTQDPKLLLNFQKILDIPIKKKAS 120

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
             PR L +++       V+L           R++ IL +LY    R  E   L   ++  
Sbjct: 121 KPPRHLTKEEV-----AVILRQPDILTLHGRRDATILCVLYDTAARAQELCDLRVADVRL 175

Query: 184 DQ-STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           +  + +RI GKG K R+VPLLP+  + +  Y              PLF    G  L    
Sbjct: 176 EHPANVRITGKGRKTRVVPLLPATMQNLKNYLSENRLLDPEKNHCPLFPNREGNHLTRAG 235

Query: 243 FQRYIRQLRRYLG-----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
            +  + +  +        +    + H  RH+ A H+  +G +L  ++  LGH  +STT +
Sbjct: 236 LRYILTKYVQQTEENGDVISKRISPHVFRHTKAMHVYESGNNLIYVRDFLGHADISTTGV 295

Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319
           Y   +       + ++ D   P
Sbjct: 296 YARTSLNMKRQALEKVSDSPVP 317


>gi|116254596|ref|YP_770432.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|116254608|ref|YP_770444.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|116255785|ref|YP_771618.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115259244|emb|CAK10376.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115259256|emb|CAK10389.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115260433|emb|CAK03537.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 286

 Score =  182 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 79/293 (26%), Positives = 126/293 (43%), Gaps = 32/293 (10%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E+   R+  + ++ I R LS  T +SY     +F  +           ++  +L   ++R
Sbjct: 3   EISPLRRRMIDDMTI-RNLSPATQRSYLHAVTKFSRYFG---------RSPDRLGLEDVR 52

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           AF     +  +   +L +++  ++ F           E     +   +    LP  LN  
Sbjct: 53  AFQVHLVSSGLSWPALNQTVCALRFFFGVTLGHGEIPE----RIAYARTPAKLPTILNGD 108

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-Q 191
           + +  ++ V             R    L   Y  GLR SEA+ L  ++I  ++  +R+  
Sbjct: 109 EIVRFLEAV----------PSLRTRTALTTAYAAGLRASEAVHLKVRDIDGERGIIRVEH 158

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQL 250
           GKG K R V L   +   +  Y+ L         ++ LF G    KP++  V     R  
Sbjct: 159 GKGGKDRNVMLSAQLLAILRVYWRLA------RPEVWLFPGRDETKPIDVQVLYSACRSA 212

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
               G+    T HTLRHSFATHLL +G D+R IQ +LGH  LSTT  YT V++
Sbjct: 213 CTAAGIDKRVTVHTLRHSFATHLLESGTDIRIIQVLLGHNNLSTTARYTKVSN 265


>gi|254451038|ref|ZP_05064475.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198265444|gb|EDY89714.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 317

 Score =  182 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 73/279 (26%), Positives = 128/279 (45%), Gaps = 27/279 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R L   +  S++   ++F  +L          ++    +  +++ F        +   + 
Sbjct: 39  RNLGPASQSSHQRACKRFAAWLG---------RSPETATPDDVKYFQQHLVESGVSICTR 89

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            ++++G+K   +   +R       +  + +LK+   +P  L++K+   ++          
Sbjct: 90  NQTMTGVKFLFRVTLRRH----DLVAEIFHLKEPVKVPLVLSKKEIKRILAM-------- 137

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR 207
                 +   +L L YGCG+R  E + L   +I   Q  +RI Q KG K R V L   + 
Sbjct: 138 --APSLKARVMLSLAYGCGMRAGEVVRLKVGDIDSAQKIIRIVQAKGRKDRNVMLPSDIL 195

Query: 208 KAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             + E++   P   + ++  P   LF G RGK L+     R  ++  R  G+    T HT
Sbjct: 196 GMLREWWKERPTGQDKDLPTPERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHT 255

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           LRHSFATHLL  G D+R IQ++LGH +L+TT  Y +V +
Sbjct: 256 LRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVAT 294


>gi|260587709|ref|ZP_05853622.1| integrase/recombinase, phage integrase family [Blautia hansenii DSM
           20583]
 gi|331084000|ref|ZP_08333107.1| hypothetical protein HMPREF0992_02031 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541974|gb|EEX22543.1| integrase/recombinase, phage integrase family [Blautia hansenii DSM
           20583]
 gi|330402362|gb|EGG81932.1| hypothetical protein HMPREF0992_02031 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 355

 Score =  182 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 65/307 (21%), Positives = 124/307 (40%), Gaps = 26/307 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEE-------KITIQTIRQLSYTEIRAFISKRRT---- 80
           S  T  SY  D R F  FL             +I+IQ +  L   +   F    +     
Sbjct: 42  SDKTRLSYAYDLRVFFRFLQETNPSLKEKSLSEISIQDLSLLEPVDFEEFQEYLKAYQSA 101

Query: 81  ----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               +      + R +S ++SF  YL KR++ T + +  +   K        L+  +   
Sbjct: 102 DNKLETNSRTGIARKMSCLRSFYDYLCKRQLLTSNPVRLVDMPKIKEKAIIQLDPDEVAN 161

Query: 137 LVDNVLLHTSHETK-------WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           L+D +  +    +            R+ AI+ LL G G+R+SE + L   +I    + +R
Sbjct: 162 LLDYIENYGKQLSGVKLYHYNKQKYRDIAIVTLLLGTGVRVSELVGLNIGDIDFKNNGIR 221

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYI 247
           I  KG    IV     V +A+ +Y ++    +      +  LF   + K ++    ++ +
Sbjct: 222 ILRKGGNEMIVYFGAEVEQALKDYLEISRNSITPLSGHEDALFLSGQRKRISVDAVEKMV 281

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNG 306
           ++    + +  + T H LR ++ T L    GD+  +  +LGH  ++TT + Y  ++ +  
Sbjct: 282 KKYASAVSV-KTITPHKLRSTYGTALYRETGDIYLVADVLGHSDVNTTKKHYAKLSDERR 340

Query: 307 GDWMMEI 313
                 +
Sbjct: 341 RSASKAV 347


>gi|134298655|ref|YP_001112151.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134051355|gb|ABO49326.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 293

 Score =  182 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 137/295 (46%), Gaps = 17/295 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L+++    G ++ T+++Y+ D   F  +    T ++  +  I  +   E + ++    
Sbjct: 11  DFLEDI-YSGGTARSTVEAYQKDVVYFSKWYIDTTGKEPHLWDITSIDLREYQEYM--LS 67

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q +   ++ R ++ ++ ++++   +   +   +   + +K+  + P+AL   +   L+ 
Sbjct: 68  VQGLMPATINRRMAAMEKYIRWAHGKGYISRL-LAFPKIIKEQKTPPKALGRVEQNRLLR 126

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKI 197
               H           + A++ L+  CGLR+ E +S+   ++   +   T+ + GKG K 
Sbjct: 127 EAERHGKAR-------DIALIRLMMSCGLRVGEVVSIRLSDLDIGERHGTVAVLGKGKKY 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R VP+ P  RKAI E+          N    LF       +     ++ I+ + ++ GL 
Sbjct: 180 RKVPVPPEARKAIKEWLAERTQRYPDN--DWLFPNRNVGNITARNVEQVIKNIGKFAGLD 237

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                H LRH+ AT+++  G D+ ++  ILGH  L+TT IYT  +SK     + +
Sbjct: 238 --LHPHVLRHTAATNMIRTGADIVTVAQILGHANLNTTAIYTKPDSKTMLKALEK 290


>gi|259909522|ref|YP_002649878.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224965144|emb|CAX56676.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 345

 Score =  182 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 133/311 (42%), Gaps = 25/311 (8%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT----- 80
             ER  S+ TL+       +F+ +      ++  I     ++   +  +           
Sbjct: 42  RRERNWSETTLKVQTHHGYRFICWA-----QERGIHHAADVTRPVLERWQRHLYRYRKGN 96

Query: 81  -QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLV 138
            + +  R+ + +L  ++ + ++L K+ +   +   ++   +    LPR  L+ +Q   +V
Sbjct: 97  GEPLSPRTQRTALQPLQVWFRWLAKQNLILANPAADLELPRLEKHLPRTILSVEQVEDIV 156

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197
           +   L+T         R+ A+L LL+  G+R  E   L   +    +  L I QGKG + 
Sbjct: 157 NLCDLNT-----LQGMRDRALLELLWSTGIRRGEVARLETWSADFSRKILTIVQGKGKQD 211

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLG 255
           R++P+       +  Y      ++  +     LF  + G   L        +    R  G
Sbjct: 212 RVIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVAGLTANGITHAVVPYLRAAG 271

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + H  RH+ AT +L NG DLR IQ++LGH  + +TQIYT V+ +     +  ++ 
Sbjct: 272 IEKG-SCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIR----ALQAVHA 326

Query: 316 QTHPSITQKDK 326
            THP+   +D+
Sbjct: 327 STHPAEQTEDE 337


>gi|291522348|emb|CBK80641.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 350

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 63/311 (20%), Positives = 122/311 (39%), Gaps = 25/311 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-------EKITIQTIRQLSYTEIR 72
            + ++LEI +  S  T ++Y  D   F  FL              + I+ +  ++  ++ 
Sbjct: 31  EYFRSLEIRK--STNTRKNYAYDLGVFFYFLKTNNPYFKDKDIHTLPIEVLDMITAMDVE 88

Query: 73  AFISKR----RTQKIGDRS---LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
            ++S      +  K+         R LS +KSF  Y  K+ +   +    +   K  N  
Sbjct: 89  EYLSYLESYTKDGKLYTNREEGKARKLSSLKSFYDYYFKKNLIRTNPPRQVDVPKIKNKN 148

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDAR------NSAILYLLYGCGLRISEALSLTPQ 179
              L+  +   L+D          + + +       + AIL LL G G+R+SE + L  +
Sbjct: 149 IIRLDPNEIAQLLDEAESGEKLSGRQLASHEKTKVRDVAILTLLLGTGIRVSECVGLNLE 208

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKP 237
           ++  +   +RI  KG    ++     V +A+  Y +      +     +  LF  +    
Sbjct: 209 DVDFNNGAIRIIRKGGNEALIYFGDEVSQALEAYMNGSRKTAEPAAGHEEALFISLNKTR 268

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
           +     +R +++  R +      T H LR +F T L    GD+  +   LGH  ++TT +
Sbjct: 269 ITTRSVERLVKKYSRLVTTVKKITPHKLRSTFGTALYQETGDIYLVADTLGHKDVNTTKK 328

Query: 297 IYTNVNSKNGG 307
            Y  ++     
Sbjct: 329 HYAAIDEHRRR 339


>gi|147668730|ref|YP_001213548.1| phage integrase family protein [Dehalococcoides sp. BAV1]
 gi|146269678|gb|ABQ16670.1| phage integrase family protein [Dehalococcoides sp. BAV1]
          Length = 319

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 128/291 (43%), Gaps = 21/291 (7%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            LS  T++ Y      FL +      + + I T+ ++    +R ++ K + +     S+ 
Sbjct: 43  RLSPHTIRYYTYALNSFLGYC-----QTLGINTVEEIEANHVRLYLVKLQERN-NPTSVL 96

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
                +K F  +L +  + ++S +  ++  +    + R    +Q   L+       +   
Sbjct: 97  DYYKAVKRFFNWLIEEGVLSKSPLATIKPPRTEQKIIRPFTRQQIEDLL------ATCGD 150

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
             I  RN A++  +   GLR+SE  ++  +++  D+ T+ + GKG K R+V +    ++ 
Sbjct: 151 SPIGLRNKAMILTMLDTGLRVSEMSAIQLKDVDFDKETIIVMGKGAKQRVVRIGHKAQET 210

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHS 268
           IL Y          +    L+    G  L+    +  +R+L +  GL  +  + HT RH+
Sbjct: 211 ILRYLLTRQ-----DECPALWMSTTGSGLSTEGIKVVVRELGKRAGLTGVRCSPHTFRHT 265

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           FAT  L NG     +QS+LGH  L  T+ YT   +    +  ++ + +  P
Sbjct: 266 FATQALINGAGEFEVQSLLGHSTLVMTKRYT---ASLKSEHAVQEHKKFSP 313


>gi|325661290|ref|ZP_08149916.1| hypothetical protein HMPREF0490_00649 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472239|gb|EGC75451.1| hypothetical protein HMPREF0490_00649 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 302

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 69/302 (22%), Positives = 138/302 (45%), Gaps = 18/302 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L    + ++ + ++ R LS+ T++ Y  +  +F  F+     ++  I  + ++    I A
Sbjct: 3   LEDVLEEFIFDCKL-RRLSEKTIKGYRNNNLRFFTFIK----KEYDIDDLGKIQGNVINA 57

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +I+   +       +   +   ++F KY +  K  + + +  +   K+  +L +  N+K+
Sbjct: 58  YIAYLTSIGRKPSYINGIIKSFRAFYKYCENEKYVSRNPMNKVNFQKQGKTLIKTFNDKE 117

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              +V           +++D R+  I+ +L   G+R SE   L   +I  D   + I+GK
Sbjct: 118 VRDMVRYY-----GSVRYLDIRDKLIMVMLLDTGIRNSELCGLLISDIRYDH--ILIRGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPF---DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           G+K R+VP+ P + K +++Y  +      D        LF   +GK L P   +R + + 
Sbjct: 171 GNKERVVPISPILNKILIKYKRVRNLYIKDKFAYQIEYLFLSQKGKKLTPETVERVVLEC 230

Query: 251 RRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN-VNSKNGG 307
                +  +   + HT RH FA   L NG DL ++  +LGH  ++ T+IY   ++ +   
Sbjct: 231 AEACKVRKTIRCSPHTCRHYFAQAQLKNGCDLYTLSRLLGHSNINITKIYLQSMDDERVL 290

Query: 308 DW 309
           D 
Sbjct: 291 DM 292


>gi|310642278|ref|YP_003947036.1| integrase family protein [Paenibacillus polymyxa SC2]
 gi|309247228|gb|ADO56795.1| Integrase family protein [Paenibacillus polymyxa SC2]
          Length = 318

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 76/320 (23%), Positives = 139/320 (43%), Gaps = 25/320 (7%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ME +   EI      +E + +L  ++   G +  T ++Y  D +QFL  L          
Sbjct: 8   MELDTTEEIDEV-YTEELEAFLIWMKDA-GYTIHTQKNYTGDVKQFLRTLRD-------- 57

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           + + Q+    + +++SK R    GD +  R  + + SF + L++ ++ + +    ++  K
Sbjct: 58  KPLDQVKKIHVMSYLSKAREGGAGDSTRNRKHAAVNSFFRALQEFELCSTNPAAGIKKAK 117

Query: 121 KSN-SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
                +P  L+EK     +  V    ++        N AI  L+   GLR+ E  SL   
Sbjct: 118 TEKNRMPVYLDEKDIQPFLLAVEGKYANR-------NMAIFLLMVYMGLRVGEIHSLNVS 170

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           +   ++ TL + GKG K R +P+  +V   +    +          +  +F   +G+ L 
Sbjct: 171 DYSRERRTLDVFGKGRKWRTLPVPAAVCDFVEHALEERLTPWRGK-EDAMFISQKGRRLA 229

Query: 240 PGVFQRYIRQLRRYLGLPLST------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
               Q+   +                 ++H LRH+FAT LL  G DLR++Q +LGH  + 
Sbjct: 230 VRSIQQIATETFERFQQDKGLERREAYSSHKLRHTFATMLLRKGADLRTVQELLGHSSIQ 289

Query: 294 TTQIYTNVNSKNGGDWMMEI 313
           TT +YT+V  +     M ++
Sbjct: 290 TTTVYTHVTDREKEKAMDKL 309


>gi|186471692|ref|YP_001863010.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198001|gb|ACC75964.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 292

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 80/289 (27%), Positives = 129/289 (44%), Gaps = 33/289 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ  L +++I R LS  T +SY      F              ++   L   EIRA++  
Sbjct: 5   RQRMLHDMQI-RNLSDNTQKSYLLQVSSFARHFR---------RSPEMLGPEEIRAWLIY 54

Query: 78  RRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            R + K+   SL  ++  ++   +   KR  + E         +K   LP  L+ ++  T
Sbjct: 55  LREERKLAPASLSPAIGALRFLYRVTLKRDWSDED----FPLPRKPVRLPVVLSLEEITT 110

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195
             D++             ++  IL + Y  GLR+SE + L   +I   +  +R+ QGK  
Sbjct: 111 FFDSI----------PSLKHRTILMVAYAAGLRVSEVVHLKVTDIDSKRMVIRVNQGKNR 160

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYL 254
           K R V L P + + +  Y+       + + +  LF G I G P+      R     R+  
Sbjct: 161 KDRYVMLSPRLLEVLRTYWQ------DAHPRDWLFPGDIPGHPITRTAVARICALARQRS 214

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           G+    T H+LRH+FATHLL  G D+R IQ ++GH  L+TT  Y  + +
Sbjct: 215 GITKPVTPHSLRHAFATHLLETGTDVRRIQLLMGHRSLATTSRYLRIAT 263


>gi|145306755|ref|YP_001144419.1| integrase/recombinase [Magnetospirillum gryphiswaldense MSR-1]
 gi|144901521|emb|CAM78243.1| integrase/recombinase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 302

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 132/292 (45%), Gaps = 26/292 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ  ++++ + R  S+ T ++Y  D  +F  FL          ++    +  ++R F  +
Sbjct: 14  RQRLIEDMTL-RRFSRETQRNYIRDVGRFAAFLG---------RSPDTATAEDVRQFQLE 63

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +R   +   ++   +S ++ F  +   R          +  +     LP  L+ ++   L
Sbjct: 64  QRESGVPVPTMNSIVSALRFFFTHTIDR----PDLARKLMRISHPRQLPMVLSREEVARL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
           ++               ++ A L + YG GLR++E  +L  ++I  ++  +R+ +GKG +
Sbjct: 120 LNAT----------TCLKHQAALSVAYGAGLRVAEVSALKVRDIDSERMLIRVERGKGGR 169

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLG 255
            R   L P +   + +++        ++    LF G    KP++     R + +  +   
Sbjct: 170 SRNAMLSPDLLTLLRQWWAFGRQQGVMHRDGWLFPGQHTMKPISTRQLHRIVVEAAQAAE 229

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +      HTLRHSFATHLL +G D+R IQ +LGH +L  T +YT V ++   
Sbjct: 230 IAKRVGPHTLRHSFATHLLEDGVDIRVIQVLLGHSKLENTALYTKVATRTVR 281


>gi|295100462|emb|CBK98007.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 340

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 73/323 (22%), Positives = 135/323 (41%), Gaps = 14/323 (4%)

Query: 9   IVSFELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           + + +       +L   L   + +S  T+ SY    R FL +       +I   +I  L+
Sbjct: 1   MKTADFAAHLTEFLSHYLPELKNISTNTISSYCDAFRLFLGYCQDVEGMRIEKLSIDDLT 60

Query: 68  YTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
              +  F+   R  +  G  +  + L+ I+SF+KYL+ ++     N   +  +    +  
Sbjct: 61  PELVDHFLQWLRIERNNGTATRSQRLAAIRSFVKYLQIKEPRLLLNFQQILAIPVKRAER 120

Query: 127 RALNE--KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           +A+N   K+A+ L+    L     +     R++ IL  LY    R+ E   L  +++  D
Sbjct: 121 KAINPLTKEAIALI----LRQPDTSTLSGRRDATILCFLYDTAARVQEICDLRIEDVRLD 176

Query: 185 Q-STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
             ++++I GKG K R+VP+LP+  + + +Y             LPLF    G+ L     
Sbjct: 177 YPASVKILGKGRKTRVVPILPATAQNLKKYLTEMHMLAPEKSHLPLFMNRNGQKLTRAGV 236

Query: 244 QRYIRQLRRYLGL-----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              + +  +   +     P     H +RH+ A H+     DL  ++  LGH  + TT IY
Sbjct: 237 TYILNKYAKAASVIDPSVPEKIPPHLMRHTKAMHIYDADNDLVHVRDFLGHSDIKTTDIY 296

Query: 299 TNVNSKNGGDWMMEIYDQTHPSI 321
              +       +  + D   PS+
Sbjct: 297 ARSSLTMKQKALERVSDSPVPSM 319


>gi|257091622|ref|YP_003165265.1| hypothetical protein CAP2UW1_4693 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048631|gb|ACV37818.1| hypothetical protein CAP2UW1_4693 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 337

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 69/325 (21%), Positives = 130/325 (40%), Gaps = 23/325 (7%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M     P      L++    ++++L  +R LS  T+ +Y      FL F          +
Sbjct: 1   MRRQPKPAPSFPALVQAF--FVEHLTQQRALSPQTVAAYRDAFVLFLGFAEVRLGRSPAL 58

Query: 61  QTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITT---ESNILNM 116
            T+  ++   I AF+    R +    RS    L+ ++SFLK+   R +T+     + L +
Sbjct: 59  ITLADITPDLITAFLDHLERKRHNSVRSRNGRLAALRSFLKFAAHRDVTSLQVIEHALGV 118

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              +    +   L+ ++ L ++       + +  W   R+  ++ LLY  G R+SE + +
Sbjct: 119 PAKRFERPMLGYLSREEMLAVI------GTPDGTWFSQRDHVLVLLLYNTGARVSEIVGV 172

Query: 177 TPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
               ++ D     + + GKG K R VPL  S  +AI  +      +   +   PL     
Sbjct: 173 KVGEVVLDDGAACVHLHGKGRKQRSVPLWRSTIRAIRAWIK---RNPQFDSDSPLLHNRD 229

Query: 235 GKPLNPGVFQRYIRQLRRYLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           G+ ++     + + +  +              + H +RH+ A HLL  G D+  I   LG
Sbjct: 230 GQAMSRWNVMQRLDRAVQVATESCPELATRHISPHVIRHTTAMHLLQAGVDISVIALWLG 289

Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEI 313
           H   +TT  Y   +       +  +
Sbjct: 290 HESPATTHQYVEADLAMKERALARL 314


>gi|312174392|emb|CBX82639.1| Tyrosine recombinase xerD [Erwinia amylovora ATCC BAA-2158]
          Length = 346

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 70/307 (22%), Positives = 131/307 (42%), Gaps = 19/307 (6%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT---QK 82
             ER  S+ TL++      +F+ + A           I +      + ++ + R    + 
Sbjct: 42  RRERNWSETTLKTQTHHGYRFICWAAERGL--YHAADITRPVLERYQRWLYQYRKTNGEA 99

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLVDNV 141
           +  R+ + +L  ++ +  ++ K+ +   +   ++   +    LPR  L+ +Q   +++  
Sbjct: 100 LTSRTQRTTLQPLQVWFSWMAKQGLILANPAADLELPRLEKHLPRTILSVEQVEEVLNLC 159

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV 200
            L T         R+ A+L LL+  G+R  E   L   +    +  L I QGKG + R++
Sbjct: 160 DLST-----LQGMRDRALLELLWSTGIRRGEVARLETYSADFSRKILTIVQGKGKQDRVI 214

Query: 201 PLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLGLPL 258
           P+       +  Y      + L       LF  + G   L        +    R  G+  
Sbjct: 215 PVGERALCWLRHYLHQVRPEVLVSPDCKALFLAMDGVAGLTANGITHAVVPYLRAAGIEK 274

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H  RH+ AT +L NG DLR IQ++LGH  + +TQIYT V+ +     +  ++  TH
Sbjct: 275 G-SCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIR----ALQAVHASTH 329

Query: 319 PSITQKD 325
           P+  Q+ 
Sbjct: 330 PAEQQEP 336


>gi|283479897|emb|CAY75813.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 351

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 85/324 (26%), Positives = 136/324 (41%), Gaps = 25/324 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +  ++WL +L +  G S  T Q Y      FL +      E   I    Q+S   + A
Sbjct: 21  LRQLAESWLAHLVVA-GRSARTAQGYGERVXAFLAWC-----EPRGITYAPQVSLAVLEA 74

Query: 74  FISKRRTQKIGD------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP- 126
           +    +  +  D       S    LS ++   ++L KR     S    +   K+   LP 
Sbjct: 75  YQRWLQGYRRADGKQLVVNSQLHRLSAVRMLFRWLLKRHHILYSPAEQLELPKEERRLPA 134

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           +  +E +   ++ ++   T         R  AIL LL+  G+R SE   L   ++   + 
Sbjct: 135 QVFSEAETRRVLQSLDAGTP-----PGLRXRAILELLWSSGIRRSELAGLLLSDVDFTRG 189

Query: 187 TLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQ 244
            + ++ GKG K R+VP+  +    +  Y       L        LF   +G  L  G   
Sbjct: 190 VVNVRRGKGGKDRVVPVGHTALMWLXRYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLT 249

Query: 245 RYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
               R +R    L  +   H  RH  AT +L NG D R IQ+ILGH +L TTQIYT V  
Sbjct: 250 AMAGRAIRSGAHLKKAGACHIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVAI 309

Query: 304 KNGGDWMMEIYDQTHPSITQKDKK 327
            +    + +++  THP+  ++ +K
Sbjct: 310 GH----LQKVHAHTHPAEKRRTEK 329


>gi|269955978|ref|YP_003325767.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894]
 gi|269304659|gb|ACZ30209.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894]
          Length = 329

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 80/321 (24%), Positives = 142/321 (44%), Gaps = 15/321 (4%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           +LP + +  L      + ++L+ +RG S  T ++Y  D    L +   +    +      
Sbjct: 20  DLPPLPAG-LADAVARFGKHLDAQRGHSVHTRRAYLADVTGLLRYAVRHGAHGM-----D 73

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            L    +R ++  +  + +   +L R  +  ++FL++     +T       + + K   +
Sbjct: 74  DLQLPVLRGWLGAQADRGLARATLARRGAAARAFLRWAHHTGLTDADASARLASPKVPRT 133

Query: 125 LPRALNEKQALTLVD---NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           LP  L    A  ++D   +  L    + +    R  A   LLYG G+R+ E +++   ++
Sbjct: 134 LPTVLTPDAAARMLDTARDDALAAEGDDRPAALRAWAAAELLYGSGIRVGELVAVDVHDV 193

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNP 240
              +  +R+ GKG K R+VP      +A+  + D     L        L  G RG     
Sbjct: 194 DVRERLVRVLGKGGKERVVPFGVPAARALTAWLDDGRPALARAGAGTALLVGDRGGRWGQ 253

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              +  + +L    G+      H LRHS ATHLL  G DLRS+Q +LGH  L+TTQ YT+
Sbjct: 254 RQAREAVHRLAARAGVD-DVAPHALRHSAATHLLQGGSDLRSVQEVLGHANLATTQRYTH 312

Query: 301 VNSKNGGDWMMEIYDQTHPSI 321
           V+++     + ++Y Q  P  
Sbjct: 313 VDAER----LRQVYTQAFPRA 329


>gi|150026173|ref|YP_001296999.1| integrase/recombinase [Flavobacterium psychrophilum JIP02/86]
 gi|149772714|emb|CAL44197.1| Integrase/recombinase [Flavobacterium psychrophilum JIP02/86]
          Length = 347

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 85/301 (28%), Positives = 141/301 (46%), Gaps = 30/301 (9%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + S E  ++ Q + + L   +  S  T+++Y    + FL+F       +IT Q +   + 
Sbjct: 66  VPSEEKREQIQKFSKWL-FSKRYSPSTIKTYTEALQSFLLFFDQKPITEITNQDVIVYNN 124

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             I          K+      + ++ IK + K +K+ KI  +     +   K+S  LP  
Sbjct: 125 EYIL-------KNKLSASYQNQIVNAIKLYFKTIKEVKIEVD----KIHRPKRSKLLPNV 173

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L++++   +++             + ++  +L L+Y CGLR SE L L P +I   +  +
Sbjct: 174 LSKEEIKLILEAH----------SNIKHKTMLSLIYSCGLRRSELLHLKPTDIDSKRGIV 223

Query: 189 RIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRY 246
            I+  KG K RI PL P +   + EYY       N   +  LF G   G+  +    Q  
Sbjct: 224 IIRQSKGKKDRIAPLSPKILVMLREYYS------NYKPKSWLFEGQIPGETYSEKSLQNV 277

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           ++Q      +    + H LRHS+ATHLL +G DLR IQ +LGH    TT+IYT+V++KN 
Sbjct: 278 LKQALEKAKIAKPVSLHWLRHSYATHLLESGTDLRYIQELLGHSSTKTTEIYTHVSTKNL 337

Query: 307 G 307
            
Sbjct: 338 Q 338


>gi|225378079|ref|ZP_03755300.1| hypothetical protein ROSEINA2194_03739 [Roseburia inulinivorans DSM
           16841]
 gi|225210080|gb|EEG92434.1| hypothetical protein ROSEINA2194_03739 [Roseburia inulinivorans DSM
           16841]
          Length = 349

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 62/304 (20%), Positives = 122/304 (40%), Gaps = 22/304 (7%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTE-------EKITIQTIRQLSYTEIRAFISKRR----- 79
           S  T  +Y  D   F  +L             +I +  +  L+  +I  ++S  +     
Sbjct: 41  SSRTRIAYAYDLNCFFDYLHENNPLCSKKDITEIPLSVLGNLAPMDIEEYLSYLKYYEKD 100

Query: 80  --TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                  +R LKR L+ ++SF +YL K ++  +   + +   K        L+  +   L
Sbjct: 101 GVEHTNDERGLKRKLASLRSFYRYLYKNEMIGQDPAVKVDMPKIHEKTITRLDIDEVANL 160

Query: 138 VDNVLLHTSHETKWIDAR------NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           +D V    S   K           + A++ LL G G+R+SE + L   ++    + ++I 
Sbjct: 161 LDEVESGESLTEKQQKFHEKTKTRDLAMMTLLLGTGIRVSECVGLDMDDVDFKNNGIKIH 220

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL 250
            KG    +V     VR A++EY          +  +  LF  ++ K ++    ++ + + 
Sbjct: 221 RKGGAEVVVYFGEEVRSALMEYMVERQKITAADGSVNALFLSLQNKRISVRSVEKMVNKY 280

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDW 309
            + +      T H LR ++ T L    GD+  +  +LGH  ++TT+  Y  ++       
Sbjct: 281 SKLVTSLKHITPHKLRSTYGTSLYRETGDIYLVADVLGHKDVNTTRKHYAAIDDDRRRSA 340

Query: 310 MMEI 313
              +
Sbjct: 341 AKYV 344


>gi|103485933|ref|YP_615494.1| phage integrase [Sphingopyxis alaskensis RB2256]
 gi|98976010|gb|ABF52161.1| phage integrase [Sphingopyxis alaskensis RB2256]
          Length = 334

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 74/311 (23%), Positives = 130/311 (41%), Gaps = 21/311 (6%)

Query: 13  ELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            L      +L ++L  ER +S  T+++Y       + F A   + + T   +  L    I
Sbjct: 3   ALALHLSAYLREHLPRERAVSPHTVKTYANCFVLLVQFAADRLKRRPTDLEVEDLGTDMI 62

Query: 72  RAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPR 127
            AF+      +    R+    L+ I+SF +Y++ R        L +R +   K   +L  
Sbjct: 63  MAFLDHVEIGRGSCVRTRNGRLAAIRSFFRYIEYRIPACLDQALRVRAIPTKKTDKALID 122

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQS 186
            L+  +   L+D     T      +  R+ A+L+L Y  GLR+SE ++L   +      S
Sbjct: 123 YLDRAEIKALLD-----TPDPRTRLGTRDRAMLHLTYAGGLRVSELVTLQLGDFPDRSLS 177

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           T+ I GKG + R++PL    + A+  +  + P          +F    G+P+    F   
Sbjct: 178 TMHIMGKGRRERVLPLWKETQIALRAWLAIRPQVEVTE----IFLNANGQPMTRDGFAFR 233

Query: 247 IRQLRRYLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           + +  +         L    T H LRHS A H L+  GD+R +   LGH  + +T+ Y  
Sbjct: 234 LAEHVKTAATKQPSILGKRVTPHVLRHSCAMHTLAATGDIRKVALWLGHASIQSTETYLR 293

Query: 301 VNSKNGGDWMM 311
            + +     + 
Sbjct: 294 ADPEEKLQILA 304


>gi|255100620|ref|ZP_05329597.1| integrase/recombinase [Clostridium difficile QCD-63q42]
          Length = 346

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 71/317 (22%), Positives = 129/317 (40%), Gaps = 13/317 (4%)

Query: 14  LLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           L     ++L  +L  E+  S  T++SY         F+       ++  T   +    + 
Sbjct: 7   LFSLVHDFLLVSLPDEQKCSPNTIRSYRKSLELLFDFIKTKRNISLSEITFEMIDRNAVS 66

Query: 73  AFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
            F+    T++     +    L  I++F KY  +  IT  S++  ++ +KK+   P  +  
Sbjct: 67  EFLDYLETERNCSISTRNHRLHCIRAFYKYAAQEDITVISHLEEIQKVKKAKE-PETI-V 124

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLRI 190
           +       N +L           R++ +L  LY  G R+ E + +   +I   +   + I
Sbjct: 125 EHMSEDAVNAILKQPDTFTEKGKRDAFLLLFLYKTGARVQELVDIRLCDIQLGRHPKVTI 184

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNPGVFQRYI 247
            GKG K R +PL   V + + +Y  L   + +L  +  LF   R    K +     ++ +
Sbjct: 185 HGKGAKTRSIPLRDDVVQHLKQYLALFHPEEHLFSEQHLFYVTRSRMKKRMTEDNVRQLV 244

Query: 248 RQLRRYL-----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           R+  +        +P +   H  RHS+A  L  NG DL  I   LGH  L TT IY + +
Sbjct: 245 RKYGKQAREICKEVPENVHPHLFRHSWAMILYQNGVDLTLISQWLGHSNLETTLIYAHAD 304

Query: 303 SKNGGDWMMEIYDQTHP 319
           ++     + +      P
Sbjct: 305 TELKRKALEQAVPDDSP 321


>gi|255534753|ref|YP_003095124.1| Probable integrase [Flavobacteriaceae bacterium 3519-10]
 gi|255340949|gb|ACU07062.1| Probable integrase [Flavobacteriaceae bacterium 3519-10]
          Length = 356

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 79/291 (27%), Positives = 131/291 (45%), Gaps = 31/291 (10%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L E + + ++L + +G S+ TL++Y  +  Q L  L  +         + +LS   +RA+
Sbjct: 82  LPEFKRFQEHLVL-KGYSQSTLRTYSIEFAQLLYVLKGH--------PVNELSPERLRAY 132

Query: 75  ISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
                   K+ +  +   ++ +K + + +  R         ++   KK   LP+ L++ +
Sbjct: 133 FLYCHENLKLSESEIHSRINAVKFYFEQVLHRHKM----FFDIPRPKKKQQLPKMLSKAE 188

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QG 192
              ++              + ++  IL + YG GLR+SE ++L   +I      +RI Q 
Sbjct: 189 IKKII----------LSVENPKHLMILKVCYGMGLRVSEVVALKLTDIDGAGKRVRIEQA 238

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K RI  L  S+   +  YY      L    +  LF G  G   +    Q   ++   
Sbjct: 239 KGKKDRITVLPESLLPELRAYY------LAYRPKTFLFEGQHGGQYSVRSAQAVFKKAVE 292

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             G+      H LRHSFATHLL  G D+R IQ +LGH  + TTQIYT+V  
Sbjct: 293 KAGIHRKLGIHGLRHSFATHLLETGTDIRFIQELLGHNSIKTTQIYTHVTD 343


>gi|332653284|ref|ZP_08419029.1| tyrosine recombinase XerC [Ruminococcaceae bacterium D16]
 gi|332518430|gb|EGJ48033.1| tyrosine recombinase XerC [Ruminococcaceae bacterium D16]
          Length = 342

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 92/349 (26%), Positives = 162/349 (46%), Gaps = 48/349 (13%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-------------EKIT 59
           E     +++L   E  +G S+ T+  Y  D R F  FL                  + + 
Sbjct: 7   EAPPILRDFLVYHETIQGHSRATVDEYFLDLRSFFRFLKLDKGRVAKDTPFDEISIDDVD 66

Query: 60  IQTIRQLSYTEIRAFISKR-RTQKIGDRS-----------LKRSLSGIKSFLKYLKKR-K 106
           +  +R ++ +++ A+++   R + +   S             R  + I+SF KYL  + K
Sbjct: 67  LDLVRGVTLSDVYAYMNYLSRDRAVHPNSSDAHYGLAPAARARKAAAIRSFYKYLSSKAK 126

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
           + TE+ + ++   +   +LPR LN  +++ L+       SH       R+  IL L   C
Sbjct: 127 LITENPMQDLDAPRLKKTLPRYLNLDESVELL-------SHVDGPNQVRDYCILTLFLNC 179

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           GLRISE + L   ++  DQ  LR+ GKG+K R++ L  + R A+ ++       L L  Q
Sbjct: 180 GLRISELIGLNVTDVRGDQ--LRVLGKGNKERVLFLNEACRSALDDWMMERST-LTLLDQ 236

Query: 227 LPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQ 284
             LF   R  + +      + +++     GL     ++H LRH+ AT +L NG D+R++Q
Sbjct: 237 NALFVTPRNRQRITRAAVHKLVKKHLSAAGLDSTKYSSHKLRHTAATLMLQNGVDVRTLQ 296

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT-----QKDKKN 328
            +LGH  L+TTQIYT+V++ +          + +P        ++ KK+
Sbjct: 297 EVLGHDHLNTTQIYTHVDNDDLRTA-----ARANPLAKVRKTAKEKKKD 340


>gi|154498007|ref|ZP_02036385.1| hypothetical protein BACCAP_01987 [Bacteroides capillosus ATCC
           29799]
 gi|150272997|gb|EDN00154.1| hypothetical protein BACCAP_01987 [Bacteroides capillosus ATCC
           29799]
          Length = 344

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 84/343 (24%), Positives = 157/343 (45%), Gaps = 42/343 (12%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-------------EKIT 59
           E     +++L   E  +G S+ T+  Y  D R F  ++                  + + 
Sbjct: 6   EAPAIIRDFLSYHETIQGHSRKTVDEYFLDLRNFFRYIKIERGCVPRSTDLDQISIDDLD 65

Query: 60  IQTIRQLSYTEIRAFISKRRTQ------------KIGDRSLKRSLSGIKSFLKYLKKR-K 106
           +  +R +  +++ ++++                  +   +  R ++ I+SF KY+  + K
Sbjct: 66  LDLVRSVKLSDVYSYMNYLSRDRAKHANSPDTGYGLTPAARARKIAAIRSFYKYITSKAK 125

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
           +  E+ + ++ + +   +LP  L+  +++ L+++V              +  IL +   C
Sbjct: 126 LMDENPMQDLDSPRLKKALPHYLSLDESIQLLESVDGENKER-------DYCILIIFLNC 178

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           GLRISE + L   +I  DQ  LR+ GKG+K RI+ L  + R+AI ++  +      ++ +
Sbjct: 179 GLRISELVGLNLTDIRKDQ--LRVLGKGNKERILFLNEACRQAIDDWLAVRGTQGIID-K 235

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQS 285
             LF   R   +        I+      GL  S  +AH LRH+ AT +L NG D+R++Q 
Sbjct: 236 NALFITRRHTRMTTDAVHYMIKNRLTAAGLDASMYSAHKLRHTAATLMLQNGVDVRTLQE 295

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           +LGH  L+TTQIYT+V+S +          + +P      KK+
Sbjct: 296 VLGHDHLNTTQIYTHVDSDDLRTA-----AKANPLGRVGRKKS 333


>gi|37527560|ref|NP_930904.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37527568|ref|NP_930912.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36786995|emb|CAE16069.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36787003|emb|CAE16077.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 376

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 71/309 (22%), Positives = 131/309 (42%), Gaps = 18/309 (5%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT---QK 82
             ER  S+ TL+     T  F+++             I +      + ++ + R    + 
Sbjct: 42  RQERSWSESTLKVQTHHTYHFILWATERGL--YYAADITRPILERYQRYLYQYRKTNGEP 99

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLVDNV 141
           +  R+ +  L  +K + K+L K+ +   +   ++   +    LPR  L   +   ++   
Sbjct: 100 LSTRTQRTQLEPLKVWFKWLTKQNLILANPAADIELPRLEKHLPRYILTIDETEQIL--- 156

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV 200
                  T     R+ A++ LL+  G+R  E   L   ++   + T+ I+ GKG+K R++
Sbjct: 157 --AQPDLTTLQGIRDRALMELLWSTGMRRGELTRLDVYSVDGKRKTVTIRQGKGNKDRVL 214

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPL 258
           PL       +  Y       L +N  +  LF  + G   L        +      +G+  
Sbjct: 215 PLGERALSWLQRYQQQVRPQLIVNPDVKALFVAMDGLDGLQANGISNLVTAYINAVGIEK 274

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H  RH+ AT +L NG DLR IQ++LGH  + +TQ+YT V+ +     +  ++  TH
Sbjct: 275 KGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIR----ALQAVHASTH 330

Query: 319 PSITQKDKK 327
           P+    D+K
Sbjct: 331 PAEQMADEK 339


>gi|323703842|ref|ZP_08115478.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
 gi|323531199|gb|EGB21102.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
          Length = 293

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/295 (21%), Positives = 136/295 (46%), Gaps = 17/295 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+ +    GL+  T+ +Y+ D   F  +    T+++  +  +  +   E + ++    
Sbjct: 11  EFLKEIRY-NGLALSTVNAYQKDIAYFAKWYMDTTDKEPHLGDVTSIDLREYQGYMQS-- 67

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q +   ++ R ++ ++ ++++  ++           + +++  + P+AL   +   L+ 
Sbjct: 68  VQDLRPATINRRMAALEKYIRWAHEKGYVDRLPTFP-KIVREQKTPPKALGRVEQNRLLR 126

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKI 197
                          RN A++ L+  CGLR+SE +++   ++   +    + ++GKG+K 
Sbjct: 127 EAERRGK-------VRNIALIRLMMSCGLRVSEVVAIRLTDLDIGERHGMVAVRGKGNKY 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R VP+ P  RKAI E+               LF    G  +     ++ ++ + ++ GL 
Sbjct: 180 REVPVPPEARKAIREWMIER--AKRYPDSDWLFPNRNGGHITARNAEQLVKNIGKFAGLD 237

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                H LRH+ AT+++  G DL ++  ILGH  L+TT IYT  + K   + + +
Sbjct: 238 --IHPHVLRHTAATNMIRTGADLVTVAQILGHANLNTTAIYTKPDRKTMMEALEK 290


>gi|166031854|ref|ZP_02234683.1| hypothetical protein DORFOR_01555 [Dorea formicigenerans ATCC
           27755]
 gi|166028307|gb|EDR47064.1| hypothetical protein DORFOR_01555 [Dorea formicigenerans ATCC
           27755]
          Length = 361

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 67/301 (22%), Positives = 120/301 (39%), Gaps = 25/301 (8%)

Query: 32  SKLTLQSYECDTRQFLIFL-------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI- 83
           S  T  +Y  D R F  FL         YT ++  +Q + ++   +I  ++   +  K  
Sbjct: 51  SAKTRINYAYDIRVFFHFLLENNPIYKNYTMDQFRVQDLERIEPVDIEEYMEYLKVYKRE 110

Query: 84  -------GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                  G+R LKR +S ++SF  Y  K +    +  L +   K  +     L+  +   
Sbjct: 111 DNEMITNGERGLKRKMSALRSFYSYYFKHQYIATNPTLLVDMPKLHDKAIIRLDIDEVAM 170

Query: 137 LVDNVLLHTSHETKWIDAR-------NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           L+D V     H T    A        + AIL LL G G+R+SE + L   ++    + + 
Sbjct: 171 LLDYVESAGEHLTGQALAYYQKTKNRDLAILTLLLGTGIRVSECVGLNLTDVDFKNNGIT 230

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYI 247
           +  KG    +V     V  A+  Y +     +      +  LF   + K +     +  +
Sbjct: 231 VTRKGGSQMVVYFGDEVADALENYIEADRKVITPLSGHEEALFLSTQRKRMGVQAIENMV 290

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNG 306
           ++  R +      T H LR ++ T L    GD+  +  +LGH  ++TT + Y  ++    
Sbjct: 291 KKYARQVTPNKKITPHKLRSTYGTSLYKETGDIYLVADVLGHKDVNTTKKHYAAIDEDRR 350

Query: 307 G 307
            
Sbjct: 351 R 351


>gi|187922254|ref|YP_001893896.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187713448|gb|ACD14672.1| integrase family protein [Burkholderia phytofirmans PsJN]
          Length = 333

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 73/319 (22%), Positives = 133/319 (41%), Gaps = 20/319 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RR 79
           + + L  +R  S+ T+ SY    + +L F+A      ++   + +L+  E+ AF+     
Sbjct: 14  FHEWLAEQRNCSRHTVLSYRDAWKLYLQFVARRHHRPVSALKLDELTADEVLAFLKHSES 73

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTE---SNILNMRNLKKSNSLPRALNEKQALT 136
            ++    +    L+ I+SF +++  R+  +    + +L++   K     P  L+  +   
Sbjct: 74  ERRTSIGTRNCRLAAIRSFFRFVADREPLSAMQCAAVLSIPTKKGPKPEPDYLDGDEVAA 133

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQGKGD 195
           ++          +     R+ A+L LLY  G RI EAL + P NI     + +++ GKG 
Sbjct: 134 ILRR-----PDRSTPEGQRDHALLALLYNTGARIQEALDVCPSNIRLTAPAQVKLYGKGR 188

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RI PL P     +    +  P   N     PLF    G PL+    +  + Q  R   
Sbjct: 189 KARICPLWPETAALLKALLERQPRPYNE----PLFVNRYGGPLSAAGARFKLAQYVRAAA 244

Query: 256 L------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                        HT RH+    +++ G D+  I++  GH  L TT  Y   N +     
Sbjct: 245 YDSPSLRKKRVHPHTFRHTAGVQMIAAGVDVTVIRNWFGHVSLDTTNHYARANIETKRLA 304

Query: 310 MMEIYDQTHPSITQKDKKN 328
           + ++   T P    + ++N
Sbjct: 305 LEQVDRSTRPGSPPRWRRN 323


>gi|254452582|ref|ZP_05066019.1| phage integrase [Octadecabacter antarcticus 238]
 gi|254454231|ref|ZP_05067668.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198266988|gb|EDY91258.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198268637|gb|EDY92907.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 320

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 75/279 (26%), Positives = 130/279 (46%), Gaps = 27/279 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R L   +  S+    ++F  +L          ++    +  +++ F        +   + 
Sbjct: 39  RNLGPASQSSHLRACKRFAAWLG---------RSPETATPDDVKYFQQHLIESGVSICTR 89

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            ++++G+K  L+   +R       +  + +LK+   +P  L++K+   ++          
Sbjct: 90  NQTMTGVKFLLRVTLRRH----DLVAEIFHLKEPVKVPLVLSKKEIKRILAM-------- 137

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR 207
                 +   +L L YGCG+R  E + L   +I  DQ  +RI Q KG K RIV L   + 
Sbjct: 138 --APSLKARVMLSLAYGCGMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDIL 195

Query: 208 KAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             + +++   P   + ++  P   LF G RGK L+     R  ++  R  G+    T HT
Sbjct: 196 SLLRDWWQERPTGQDKDVPAPERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHT 255

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           LRHSFATHLL  G D+R IQ++LGH +L+TT  Y +V +
Sbjct: 256 LRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVAT 294


>gi|38637703|ref|NP_942677.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527041|gb|AAP85791.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 332

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 72/303 (23%), Positives = 114/303 (37%), Gaps = 20/303 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-R 79
           + Q L  +R  S  T+ SY    RQFL F       + +     ++    I AF+    +
Sbjct: 15  FTQRLMQQRQASPHTISSYRDTFRQFLKFALQRLHRQPSRMNFEEIDAPLIVAFLDDLEK 74

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI---LNMRNLKKSNSLPRALNEKQALT 136
            Q +  RS    L+ I SF +Y         + I   L + + + + +L + L  ++   
Sbjct: 75  RQGVSVRSRNLRLTAIHSFFRYAALETPAHSAQIQRVLAIPSKRFTRTLVQFLTRQEVDA 134

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLRIQGKGD 195
           L+         +  W   R+ A L      GLR+SE   L   +++      +R+ GKG 
Sbjct: 135 LL-----AAPDQRTWSGRRDHAFLLFAVQTGLRLSEMTGLKRDDLVLGIGAHVRVIGKGR 189

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R  P++ S    +  +      +        LF   RG+ L     Q  + + R    
Sbjct: 190 KERCTPIVRSTLAVLKAWL----REPKRGEGDVLFPNARGERLTVHGVQYLLNKHRETAS 245

Query: 256 L------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                      T H LRH+ A  LL  G D   I   LGH  + TTQIY           
Sbjct: 246 KVCPSLKHKQVTVHRLRHTMAMDLLQAGVDRSVIALWLGHESVETTQIYLEATLAMKEQA 305

Query: 310 MME 312
           + +
Sbjct: 306 LAK 308


>gi|312193458|ref|YP_003991124.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|311217910|gb|ADP76513.1| integrase family protein [Geobacillus sp. Y4.1MC1]
          Length = 304

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 66/312 (21%), Positives = 131/312 (41%), Gaps = 23/312 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +L E + +LQ    E+G S  T+ SY  D  QFL  L     + +T   IR+     I+ 
Sbjct: 1   MLHEYETYLQ----EKGFSPNTVISYLNDVNQFLKDLHLRPGDYVTSADIRKW----IQQ 52

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS---NSLPRALN 130
            ++    + +   ++ R L+ ++SF  +  +R    ++ + ++++LK +   +     L 
Sbjct: 53  MLNPVEGKPLAISTINRRLNSLRSFYAWAVERHYIEQNPMKDIQDLKTADEDHEKIMWLT 112

Query: 131 EKQALTLVDNVLLHTSH----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           E++   L+  +          + +    R+ A++YLL   GLR+ E  +L   ++  +  
Sbjct: 113 EEEFEDLLHRMRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMK 172

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGV 242
            +RI GKG K+R VP+   +   + ++             +     +F   R    +   
Sbjct: 173 RIRIVGKGMKVRTVPISNILLAELEDWLKFRAEMAKKKPHVAASPYVFYSQRSPKFSVRG 232

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIYTNV 301
            QR I             T H  RH+F   +L     D+  ++ + GH  ++TT  Y   
Sbjct: 233 IQRMIESYSL---PNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKD 289

Query: 302 NSKNGGDWMMEI 313
           +  +  D +  +
Sbjct: 290 SYSDLADAVEAL 301


>gi|310766564|gb|ADP11514.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 344

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 68/305 (22%), Positives = 128/305 (41%), Gaps = 25/305 (8%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR------R 79
             ER  S+ TL+       +F+ +      ++  I     ++   +  +           
Sbjct: 42  RRERNWSETTLKVQTHHGYRFICWA-----QERGIHHAADVTRPVLERWQRHLWQYRKAN 96

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLV 138
            + +  R+ + +L  ++ + ++L K+ +   +   ++   +    LPR  L+ +Q    V
Sbjct: 97  GEPLSPRTQRTALQPLQVWFRWLAKQNLILANPAADLELPRLEKHLPRTILSVEQVEETV 156

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197
           +   L     T     R+ A+L LL+  G+R  E   L   +    +  L I QGKG + 
Sbjct: 157 NLCDL-----TTLQGMRDRALLELLWSTGIRRGEVARLETWSADFSRKILTIVQGKGKQD 211

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLG 255
           R++P+       +  Y      ++  +     LF  + G   L        +    R  G
Sbjct: 212 RVIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVAGLTANGITHAVVPYLRAAG 271

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + H  RH+ AT +L NG DLR IQ++LGH  + +TQIYT V+ +     +  ++ 
Sbjct: 272 IEKG-SCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIR----ALQAVHA 326

Query: 316 QTHPS 320
            THP+
Sbjct: 327 STHPA 331


>gi|13475204|ref|NP_106768.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025955|dbj|BAB52554.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 342

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 64/307 (20%), Positives = 121/307 (39%), Gaps = 20/307 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR- 79
           + + L   RG+S+ T++SY      FL F        I   TI  ++   +  F++    
Sbjct: 17  FQEYLPTLRGMSRHTIRSYRDGMILFLGFATTDCRRPIESLTIADITADRVGRFLASLES 76

Query: 80  TQKIGDRSLKRSLSGIKSFLKY---LKKRKITTESNILNMRNLKKSNSLP-RALNEKQAL 135
            +     +    L+ + +F ++        + T   +L +   + +   P   L   +  
Sbjct: 77  ERGNSIATRNTRLAALHTFARFLIAETPEHMATLQQVLGIPFKRGARVAPIEYLETTEVE 136

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQGKG 194
            L+                R+ A+  L++  G R+ E + L  +++  +    +R  GKG
Sbjct: 137 ALL-----AGIDRKTPAGRRDYAMFSLMFNTGARVQEVIDLRVRDVRLEPPHQVRFTGKG 191

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +KIR+ P+ P   + + E       D +   Q  +F   RG P+     +  +++ R   
Sbjct: 192 NKIRLCPIWPRTAQLLKELIQKQTNDEDPADQH-IFLNGRGAPMTRFGVRYLLQK-RVAA 249

Query: 255 GL-------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           G              H+LRH+ A HLL  G D  +I   LGH  L+TT  Y   +     
Sbjct: 250 GAEVAPTLSDKRIHPHSLRHTTAIHLLKAGVDFVTISQWLGHASLNTTMRYARADIDLKR 309

Query: 308 DWMMEIY 314
             + +++
Sbjct: 310 QALAQVF 316


>gi|291550383|emb|CBL26645.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 356

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 69/303 (22%), Positives = 118/303 (38%), Gaps = 25/303 (8%)

Query: 32  SKLTLQSYECDTRQFLIFL-------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI- 83
           S  T  SY  D R F  FL         YT E+  +  + +L   +I  +    +  K  
Sbjct: 45  SARTRISYAYDIRVFFHFLMENNPVYKNYTIEQFEVHDLERLEPVDIEEYQEYLKVYKND 104

Query: 84  -------GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                   ++ L R +S ++SF  Y  KR+I +++  L +   K        L+  +   
Sbjct: 105 EEKCITNTEKGLARKMSALRSFYGYYFKRQIISKNPTLLVEMPKMHEKAIIRLDTDEIAM 164

Query: 137 LVDNVLLHTSHETKWIDAR-------NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           L+D V     + T    A        + AIL LL G G+R+SE + L  Q+I    + + 
Sbjct: 165 LLDYVDHGGDNLTGQRKAYFEKTKNRDLAILTLLLGTGIRVSECVGLDLQDIDFKNNGIT 224

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYI 247
           +  KG    +V     V  A+  Y              +  LF   + K +     +  +
Sbjct: 225 VTRKGGNQMVVYFGEEVENALKTYLYTTRKQAIPLSGHENALFLSTQRKRMGVQAVENMV 284

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNG 306
           ++  R +      T H LR ++ T L    GD+  +  +LGH  ++TT + Y  ++    
Sbjct: 285 KKYAREVTPNKKITPHKLRSTYGTALYKETGDIYLVADVLGHKDVNTTKKHYAAIDEDRR 344

Query: 307 GDW 309
              
Sbjct: 345 RQA 347


>gi|283479611|emb|CAY75527.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 344

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 69/313 (22%), Positives = 133/313 (42%), Gaps = 25/313 (7%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT----- 80
             ER  S+ TL+       +F+ +      ++  I     ++   +  +           
Sbjct: 42  RRERNWSETTLKVQTHHGYRFICWA-----QERGIHHAADVTRPVLERWQRHLYRYRKGN 96

Query: 81  -QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLV 138
            + +  R+ + +L  ++ + ++L K+ +   +   ++   +    LPR  L+ +Q   +V
Sbjct: 97  GEPLSPRTQRTALQPLQVWFRWLAKQNLILANPAADLELPRLEKHLPRTILSVEQVEDIV 156

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197
           +   L+T         R+ A+L LL+  G+R  E   L   +    +  L I QGKG + 
Sbjct: 157 NLCDLNT-----LQGMRDRALLELLWSTGIRRGEVARLETWSADFSRKILTIVQGKGKQD 211

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLG 255
           R++P+       +  Y      ++  +     LF  + G   L        +    R  G
Sbjct: 212 RVIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVAGLTANGITHAVVPYLRAAG 271

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    +    RH+ AT +L NG DLR IQ++LGH  + +TQIYT V+ K     +  ++ 
Sbjct: 272 IEKG-SCXLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIK----ALQAVHA 326

Query: 316 QTHPSITQKDKKN 328
            THP+  + D ++
Sbjct: 327 STHPAEREADSEH 339


>gi|253995768|ref|YP_003047832.1| integron integrase [Methylotenera mobilis JLW8]
 gi|253982447|gb|ACT47305.1| integron integrase [Methylotenera mobilis JLW8]
          Length = 321

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 76/317 (23%), Positives = 132/317 (41%), Gaps = 60/317 (18%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           +  S  T   Y    ++F++F           +  R++   E+ AF+S   T   +   +
Sbjct: 18  KHYSIRTETQYLQWVKRFVLFH--------DKKHPREMGGAEVEAFLSHLATHGNVSSST 69

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++LS +    + +      +   + ++   KK   LP  L++++   ++D++      
Sbjct: 70  QNQALSALLFLYREVLG---LSLPWMDDVVRAKKPQRLPVVLSKQEVAKILDHM------ 120

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
                 A +  I  LLYG G+RI E   L  Q+I  D+  L I+ GKG K R+  L  S+
Sbjct: 121 -----QATHGLIARLLYGTGIRIMECCRLRVQDIDFDRGELLIRNGKGAKDRVTMLPKSL 175

Query: 207 RKAILEYYDLCPFDLNLN-------------------------IQLPLFRG--------- 232
            + +  +        + +                             +F           
Sbjct: 176 IEPLKAHLVWRKALFHADEAKGKAEVYLPDALERKYVNAATSWAWQYVFCSGSYSVDPRS 235

Query: 233 --IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
              R   L+  + QR +++     G+    T HT RHSFATHLL +G D+R++Q +LGH 
Sbjct: 236 GRERRHHLDEKLVQRAVKKAVGLAGIDKLATPHTFRHSFATHLLESGYDIRTVQELLGHS 295

Query: 291 RLSTTQIYTNVNSKNGG 307
            +STT IYT+V +K G 
Sbjct: 296 DVSTTMIYTHVLNKGGR 312


>gi|38637705|ref|NP_942679.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|38637800|ref|NP_942774.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527043|gb|AAP85793.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527138|gb|AAP85888.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 332

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 72/303 (23%), Positives = 115/303 (37%), Gaps = 20/303 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-R 79
           + Q L  +R  S  T+ SY    RQFL F       + +     ++    I AF+    +
Sbjct: 15  FTQRLMQQRQASPHTISSYRDTFRQFLKFAQQRLHRQPSRMNFEEIDAPLIVAFLDDLEQ 74

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI---LNMRNLKKSNSLPRALNEKQALT 136
            Q +  RS    L+ I SF +Y         + I   L + + + + +L + L  ++   
Sbjct: 75  RQGVSVRSRNLRLTAIHSFFRYAALETPAHSAQIQRVLAIPSKRFTRTLVQFLTRQEVDA 134

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLRIQGKGD 195
           L+         +  W   R+ A L +    GLR+SE   L   +++      +R+ GKG 
Sbjct: 135 LL-----AAPDQRTWAGRRDHAFLLVAVQTGLRLSEMTGLKRDDLVLGTGAHVRVIGKGR 189

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R  P++ S    +  +      +        LF   RG+ L     Q  + + R    
Sbjct: 190 KERCTPIVRSTLAVLKAWL----REPQRGEDDVLFPSARGERLTVHGVQYLLNKHRETAS 245

Query: 256 L------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                      T H LRH+ A  LL  G D   I   LGH  + TTQIY           
Sbjct: 246 KICPSLKQKQVTVHRLRHTMAMDLLQAGVDRSVIALWLGHESVETTQIYLEATLAMKEQA 305

Query: 310 MME 312
           + +
Sbjct: 306 LAK 308


>gi|254452119|ref|ZP_05065556.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198266525|gb|EDY90795.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 317

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 75/279 (26%), Positives = 130/279 (46%), Gaps = 27/279 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R L   +  S+    ++F  +L          ++    +  +++ F        +   + 
Sbjct: 39  RNLGPASQSSHLRACKRFAAWLG---------RSPETATPDDVKYFQQHLIESGVSICTR 89

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            ++++G+K  L+   +R       +  + +LK+   +P  L++K+   ++          
Sbjct: 90  NQTMTGVKFLLRVTLRRH----DLVAEIFHLKEPVKVPLVLSKKEIKRILAM-------- 137

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR 207
                 +   +L L YGCG+R  E + L   +I  DQ  +RI Q KG K RIV L   + 
Sbjct: 138 --APSLKARVMLSLAYGCGMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDIL 195

Query: 208 KAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             + +++   P   + ++  P   LF G RGK L+     R  ++  R  G+    T HT
Sbjct: 196 SLLRDWWQERPTGQDKDVPAPERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHT 255

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           LRHSFATHLL  G D+R IQ++LGH +L+TT  Y +V +
Sbjct: 256 LRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVAT 294


>gi|325261284|ref|ZP_08128022.1| recombinase [Clostridium sp. D5]
 gi|324032738|gb|EGB94015.1| recombinase [Clostridium sp. D5]
          Length = 313

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 73/299 (24%), Positives = 139/299 (46%), Gaps = 15/299 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +++ L IER L   TL +Y+ D    + +        I ++    L    I  +    +
Sbjct: 14  EFVEVLSIERNLGVKTLYAYKNDVDNMVKW--------IDMRGYSDLDADTIMMYFLYLQ 65

Query: 80  TQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKKSNSLPRALNEKQALTL 137
            + ++  RS++R    I+ +  +L K     E     + R  +   +LP+ L++ +  +L
Sbjct: 66  NEIELSPRSIRRKYVSIRQYCDFLNKEFDMNEIFFKFSSRKFQIPKNLPKVLSKAEIQSL 125

Query: 138 VDNVLLH----TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           + +V       +S   + +  RN  I+ LL+  GLRI E  ++  ++   +  ++ I GK
Sbjct: 126 ISSVSAEFQSVSSEYHRRLCIRNMCIIELLFCLGLRIGEIAAMDVEDYNREDCSVLIHGK 185

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R++ +   +    L  + L   +++      +F    G  L+    +    + R  
Sbjct: 186 GKKERMLFISSPIVCQKLNNWILTRQEMSP-ADSAMFVNKSGGRLSIFSIENIYYKYREL 244

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             +   +T H LRHSFAT LL+NG ++R +Q ++GH  + TTQIYT V+     + +M+
Sbjct: 245 SQINPHSTPHYLRHSFATQLLNNGANIRDVQELMGHNSIVTTQIYTEVSLNRKKEVLMK 303


>gi|229015245|ref|ZP_04172280.1| hypothetical protein bmyco0001_55910 [Bacillus mycoides DSM 2048]
 gi|228746047|gb|EEL96015.1| hypothetical protein bmyco0001_55910 [Bacillus mycoides DSM 2048]
          Length = 280

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 66/303 (21%), Positives = 130/303 (42%), Gaps = 27/303 (8%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +  + +  + +IE G S LTL++Y       L +             + + +  +++ 
Sbjct: 3   LSEAWERYQLDKKIE-GYSPLTLKTYCFQYNLLLRYFGDIN--------MSEFTTEKLKG 53

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++ +   + +   SL   +  IKS  ++        ++    ++  K    +P+ L+E +
Sbjct: 54  YLIE-AGEHLKPSSLGHRVRCIKSLFRWTHDEGFILKNPAAKLKEPKLGKKIPKFLSELE 112

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L +             ++  +A+   LY  G RI E + L   +I    +++ + GK
Sbjct: 113 IEHLREAC----------HNSMENALFEFLYSTGCRIGEVVKLNRVDINFSTNSVIVHGK 162

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK--PLNPGVFQRYIRQLR 251
           GDK R V         +  Y      D   + +  LF   R     ++    +  I+++ 
Sbjct: 163 GDKEREVYFNTRCTIWLKRYL-----DERDDEEPCLFITERRPKRRMSIDNLRFIIKRIS 217

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               +  S   H LRHS+ATH+++NG  L  IQS+LGH +  TT+IY  ++ K   D+ +
Sbjct: 218 NRARIKKSIHPHQLRHSYATHMINNGAPLEVIQSLLGHEKSETTRIYAQLSGKLRHDFYI 277

Query: 312 EIY 314
           + +
Sbjct: 278 KYF 280


>gi|254449766|ref|ZP_05063203.1| phage integrase [Octadecabacter antarcticus 238]
 gi|254450115|ref|ZP_05063552.1| phage integrase [Octadecabacter antarcticus 238]
 gi|254450532|ref|ZP_05063969.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264172|gb|EDY88442.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264521|gb|EDY88791.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264938|gb|EDY89208.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 320

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 75/279 (26%), Positives = 130/279 (46%), Gaps = 27/279 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R L   +  S+    ++F  +L          ++    +  +++ F        +   + 
Sbjct: 39  RNLGPASQSSHLRACKRFAAWLG---------RSPETATPDDVKYFQQHLIESGVSICTR 89

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            ++++G+K  L+   +R       +  + +LK+   +P  L++K+   ++          
Sbjct: 90  NQTMTGVKFLLRVTLRRH----DLVAEIFHLKEPVKVPLVLSKKEIKRILAM-------- 137

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR 207
                 +   +L L YGCG+R  E + L   +I  DQ  +RI Q KG K RIV L   + 
Sbjct: 138 --APSLKARVMLSLAYGCGMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDIL 195

Query: 208 KAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             + +++   P   + ++  P   LF G RGK L+     R  ++  R  G+    T HT
Sbjct: 196 SLLRDWWKERPTGQDKDVPAPERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHT 255

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           LRHSFATHLL  G D+R IQ++LGH +L+TT  Y +V +
Sbjct: 256 LRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVAT 294


>gi|332884956|gb|EGK05210.1| hypothetical protein HMPREF9456_02974 [Dysgonomonas mossii DSM
           22836]
          Length = 342

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 77/326 (23%), Positives = 136/326 (41%), Gaps = 18/326 (5%)

Query: 13  ELLKERQNWLQ-NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           +  K+   +L   L  ER +S  T++SY     QF++++      K+   +++  +   I
Sbjct: 6   DFAKQISRFLTTYLPYERSVSNNTIKSYSETFTQFVMYMRDCKSVKVEKLSLKHFTKDNI 65

Query: 72  RAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKR---KITTESNILNMRNLKKSNSLPR 127
             F+S    ++  G+ +    LS   SF KYL+ +    I     I+++  LK       
Sbjct: 66  LGFLSWIISSRNCGNATRNYRLSAFCSFAKYLQYKEVGGIEVWQAIMSIPKLKTGEKPVE 125

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS- 186
            L+      L+          +     R+ A+L L+   G R+ E   L P ++  +   
Sbjct: 126 YLSVDAVKLLL-----AQPDVSTCRGRRDLALLSLMCDTGARVQEICDLIPMSLRIESEP 180

Query: 187 -TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            ++ + GKG + R +PLL    +++  Y           +Q PLF   R + L       
Sbjct: 181 FSVYVIGKGKRGRTIPLLKEQVESLRIYMKENFLFSPEKLQHPLFYNCRHEKLTRAGVTY 240

Query: 246 YIRQLRRYLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            + +                 + HTLRH+ A HLL  G  L  I+ ILGH  + TT+IY 
Sbjct: 241 ILDKYVDKARKENPAFFTGHISCHTLRHTKAMHLLQAGVILHHIRDILGHSSVMTTEIYA 300

Query: 300 NVNSKNGGDWMMEIYDQTHPSITQKD 325
             +SK   + +   Y +  P+I  ++
Sbjct: 301 RSDSKQKREAIERAYLRLSPNIESEN 326


>gi|237721112|ref|ZP_04551593.1| phage integrase [Bacteroides sp. 2_2_4]
 gi|229449947|gb|EEO55738.1| phage integrase [Bacteroides sp. 2_2_4]
          Length = 327

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 62/300 (20%), Positives = 124/300 (41%), Gaps = 41/300 (13%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GL + +L  Y    R F++ +  +         I+++   ++R +++ ++  K  D +L 
Sbjct: 55  GLCQSSLDYYRVILRAFILHVGKH---------IKEIVTDDVRVYLAYKKINKCSDNTLN 105

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
                + SF  +  +  +   + +L ++ +++   L + L+E     L           +
Sbjct: 106 NIRRTLSSFFTWCTEEGVLDRNPMLRIKGVRQVKKLKKPLSEDDMERL----------RS 155

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
                RN AI+  L+  G R+SE +++   ++      + + GKG K R V L    + A
Sbjct: 156 LARTKRNKAIIEFLFSTGCRVSEMVNVNLGDVDWQNGQIDVLGKGRKYRTVYLSARCKIA 215

Query: 210 ILEYYDLCPFDLNLNIQLPLFRG------------IRGKPLNPGVFQRYIRQLRRYLGLP 257
           + EY D    DL       LF               +   ++ G  +  +R L +  G+ 
Sbjct: 216 LQEYVDSRTDDLE-----ALFLSDYEGMCQQIKDMNKLSRISKGAVEIMLRNLGKKAGIS 270

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            +   H LR + AT  L  G  +  +Q +LGH  + TT IY     ++  D +   +++ 
Sbjct: 271 -NVHPHRLRRTAATTALKRGMPIEQVQKMLGHESIETTTIYA----QSTNDEVKLAHEKY 325


>gi|126663869|ref|ZP_01734864.1| putative tyrosine recombinase [Flavobacteria bacterium BAL38]
 gi|126624133|gb|EAZ94826.1| putative tyrosine recombinase [Flavobacteria bacterium BAL38]
          Length = 580

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 85/300 (28%), Positives = 138/300 (46%), Gaps = 34/300 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
             S  TL++Y     QFL + AF   E        ++S  EI  F+     + +   S  
Sbjct: 309 NYSSSTLRTYCGAFIQFLRYFAFRNPE--------EISREEIIRFLGSLMERGLSATSGH 360

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             ++G++ + + +  ++         +   KK   LP  L  ++ L +   V        
Sbjct: 361 SMVNGVQFYYQQVLGKR----DFTFVLPRPKKEKKLPVVLTMEECLLIFKVVD------- 409

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRK 208
              + ++  +L + YG GLR+SE +SL   +I+ ++  + +   KG K R+V L  S+  
Sbjct: 410 ---NPKHKLLLLIGYGAGLRVSEIVSLKWSDILFEEHKIHVKNAKGKKDRMVMLPYSIVS 466

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           ++  Y +L         +L +F G    +P + G  Q+ +R   +  GL    T HTLRH
Sbjct: 467 SLQLYRELY------KGKLYVFEGQFAGEPYSTGSVQQVMRTALKLSGLEKKATVHTLRH 520

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
           SFATHLL NG D+R IQ  LGH  + TT +YT++  K   D +    D+    I  K KK
Sbjct: 521 SFATHLLENGTDIRYIQQFLGHSSIKTTTVYTHLT-KTAVDKIQSPLDR---MIDLKSKK 576


>gi|167758156|ref|ZP_02430283.1| hypothetical protein CLOSCI_00494 [Clostridium scindens ATCC 35704]
 gi|167664053|gb|EDS08183.1| hypothetical protein CLOSCI_00494 [Clostridium scindens ATCC 35704]
          Length = 352

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 66/319 (20%), Positives = 127/319 (39%), Gaps = 26/319 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFL-------AFYTEEKITIQTIRQLSYTEI 71
           +++ +   IE   S  T  +Y  D R F  FL         Y+ ++ T+  + +L   +I
Sbjct: 31  KDFFR--AIEPKSSAKTRINYAYDIRVFFHFLMENNPTYKNYSIDQFTLGDLERLEPVDI 88

Query: 72  RAFISKRRTQ-------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
             ++   +           G++ L R +S ++SF  Y  KR+  + +  L +   K  + 
Sbjct: 89  EEYMEYLKVYIRDDELVTNGEKGLSRKMSALRSFYNYYFKRQAISRNPTLLVDMPKLHDK 148

Query: 125 LPRALNEKQALTLVDNVL-------LHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
               L+  +   L+D V            +  K    R+ AIL LL G G+R+SE + L 
Sbjct: 149 AIIRLDADEVALLLDFVENCGNELSGQALNYYKKTKDRDLAILTLLLGTGIRVSECVGLD 208

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRG 235
             ++    + + +  KG    +V     V KA+  Y +            +  LF   + 
Sbjct: 209 LTDVDFKNNGITVTRKGGNQMVVYFGEEVEKALKHYIEGDRKAATPLSGHENALFLSTQK 268

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           + +     +  +++  R +      T H LR ++ T L    GD+  +  +LGH  ++TT
Sbjct: 269 RRMGIQAVENMVKKYARQVTPTKKITPHKLRSTYGTSLYKETGDIYLVADVLGHKDVNTT 328

Query: 296 -QIYTNVNSKNGGDWMMEI 313
            + Y  ++          +
Sbjct: 329 KKHYAAIDEDRRRKAASAV 347


>gi|319637821|ref|ZP_07992587.1| tyrosine recombinase xerD [Neisseria mucosa C102]
 gi|317400976|gb|EFV81631.1| tyrosine recombinase xerD [Neisseria mucosa C102]
          Length = 215

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 113/224 (50%), Gaps = 11/224 (4%)

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
              +L++     ++    ++  K    LP  + E Q   L+    + T H       R+ 
Sbjct: 1   MYGWLEETGQRADNPTRFLKAPKSERKLPTLITEAQIDALLAAPDVETPH-----GLRDK 55

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL- 216
           A+L ++Y  GLR++EA+ LT  +I   + ++R  GKGDK+R+VPL       +  Y +  
Sbjct: 56  ALLEVMYATGLRVTEAVKLTLSDIDLHRGSIRTIGKGDKLRLVPLGQEAAYWVERYCNES 115

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
            P  L   I   +F   +   ++  +    +++     G+  S + H LRH+FATHL+++
Sbjct: 116 RPLLLKNKICDEVFVSQKRSGISRQLAWMIVKEYAEAAGIA-SLSPHGLRHAFATHLVNH 174

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           G DLRS+Q +LGH  ++TTQIYT+V +      +  + D+ H  
Sbjct: 175 GVDLRSVQMMLGHSDINTTQIYTHVAN----IRLKNMVDEHHSR 214


>gi|291546173|emb|CBL19281.1| Site-specific recombinase XerD [Ruminococcus sp. SR1/5]
          Length = 353

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/305 (20%), Positives = 120/305 (39%), Gaps = 25/305 (8%)

Query: 34  LTLQSYECDTRQFLIFL-------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
            T  SY  D R F  FL               TI  + Q+   ++  +    +  K  D 
Sbjct: 44  KTRISYAYDIRIFFQFLLDQNPMFKDKNMSDFTIDVLDQIKAVDLEEYEEFLKVYKSADS 103

Query: 87  S---------LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           S         +KR +S ++SF  Y  K ++ T +  + +   K  +     L+  +   L
Sbjct: 104 SKTETNGERGVKRKISALRSFYAYYYKHEMITTNPSVLIDVPKIHDKNIIRLDTDEVAML 163

Query: 138 VDNVLLHTSHETKWIDAR-------NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           +D +       T             + AI+ LL G G+R+SE + L  +++    + +++
Sbjct: 164 LDYIENCGDTLTGQKRMYHEKTKDRDLAIVTLLLGTGIRVSECVGLDVEDVDFKNNGIKV 223

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQ 249
             KG    +V   P V KA+ +Y ++      L   +  LF   + + +     +  +++
Sbjct: 224 TRKGGNEMVVYFGPEVEKALKKYLEVRENITPLAGHEHALFYSTQRRRIGVQAIENLVKK 283

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
             R +      T H LR ++ T L    GD+  +  +LGH  ++TT + Y  ++      
Sbjct: 284 YAREITTTKKITPHKLRSTYGTALYQETGDIYLVADVLGHKDVNTTKKHYAALDDARRRQ 343

Query: 309 WMMEI 313
               +
Sbjct: 344 AAKAV 348


>gi|295110002|emb|CBL23955.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 354

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 63/303 (20%), Positives = 124/303 (40%), Gaps = 23/303 (7%)

Query: 34  LTLQSYECDTRQFLIFL-------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
            T  SY  D R F  FL         Y     ++  + Q+   ++  ++   +  + GD+
Sbjct: 47  KTRISYAYDIRIFFQFLLDENPVFKNYAMTDFSVDVLDQIKAIDLEEYMEYLKVYQNGDK 106

Query: 87  S-------LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           +       LKR +S ++SF  Y  KR++   +  + +   K  +     L+  +   L+D
Sbjct: 107 TETNGERGLKRKISALRSFYAYYYKREMIHSNPTVLIDVPKIHDKSIIRLDTDEVALLLD 166

Query: 140 NVLLHTSHET-------KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
            +       T       +    R+ AI+ LL G G+R+SE + L  +++    + +++  
Sbjct: 167 YIEHCGDSLTGQKRVYYEKTKERDLAIVTLLLGTGIRVSECVGLDIEDVDFKNNGIKVTR 226

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG    +V     V KA+  Y ++      L   +  LF   + K +     +  +++  
Sbjct: 227 KGGNEMVVYFGEEVEKALKRYLEVRAGITPLAGHEHALFYSAQRKRMGVQAVENMVKKYS 286

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           R +      T H LR ++ T L    GD+  +  +LGH  ++TT + Y  ++        
Sbjct: 287 RQITTTKKITPHKLRSTYGTALYQETGDIYLVADVLGHKDVNTTKKHYAALDDARRRQAA 346

Query: 311 MEI 313
             +
Sbjct: 347 TAV 349


>gi|254450019|ref|ZP_05063456.1| phage integrase [Octadecabacter antarcticus 238]
 gi|254450690|ref|ZP_05064127.1| phage integrase [Octadecabacter antarcticus 238]
 gi|254452057|ref|ZP_05065494.1| phage integrase [Octadecabacter antarcticus 238]
 gi|254452879|ref|ZP_05066316.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264425|gb|EDY88695.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198265096|gb|EDY89366.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198266463|gb|EDY90733.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198267285|gb|EDY91555.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 317

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 75/279 (26%), Positives = 130/279 (46%), Gaps = 27/279 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R L   +  S+    ++F  +L          ++    +  +++ F        +   + 
Sbjct: 39  RNLGPASQSSHLRACKRFAAWLG---------RSPETATPDDVKYFQQHLIESGVSICTR 89

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            ++++G+K  L+   +R       +  + +LK+   +P  L++K+   ++          
Sbjct: 90  NQTMTGVKFLLRVTLRRH----DLVAEIFHLKEPVKVPLVLSKKEIKRILAM-------- 137

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR 207
                 +   +L L YGCG+R  E + L   +I  DQ  +RI Q KG K RIV L   + 
Sbjct: 138 --APSLKARVMLSLAYGCGMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDIL 195

Query: 208 KAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             + +++   P   + ++  P   LF G RGK L+     R  ++  R  G+    T HT
Sbjct: 196 SLLRDWWKERPTGQDKDVPAPERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHT 255

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           LRHSFATHLL  G D+R IQ++LGH +L+TT  Y +V +
Sbjct: 256 LRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVAT 294


>gi|307721281|ref|YP_003892421.1| tyrosine recombinase XerD subunit [Sulfurimonas autotrophica DSM
           16294]
 gi|306979374|gb|ADN09409.1| tyrosine recombinase XerD subunit [Sulfurimonas autotrophica DSM
           16294]
          Length = 275

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 80/312 (25%), Positives = 149/312 (47%), Gaps = 39/312 (12%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  E + +L+ + + R LSK ++++Y+ D             EK   + +  L   ++ +
Sbjct: 1   MSNELEAFLEYITVTRALSKKSVEAYKSDL---------CAIEKKLSKPLICLDTQKLMS 51

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            +   + +    R+L R LS + +F ++  K+  +++     ++  K    LP+ L+ + 
Sbjct: 52  VLFSYKNK----RTLNRKLSSVNAFFEFCYKQHFSSQK--TKLKFAKIPKLLPKFLSYED 105

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG- 192
            L+ +D +       T WI  R+ A++  LY  G RISE L L   +I  ++  L ++  
Sbjct: 106 ILSGLDLI-----DRTNWIGKRDYALILFLYASGTRISECLELMLGDI--EEGWLHVRHA 158

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG+K RIVPL    +KA+ EY      +     +  ++   +G  L+     +  ++   
Sbjct: 159 KGEKERIVPLAKVAKKAVDEYMFASAIN-----KEYVWCNYQGGKLSRISAYKITQKYL- 212

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                   + H LRHS+AT L+  G DLR +Q +LGH  L TTQIYT++  ++    + +
Sbjct: 213 ------GVSPHVLRHSYATSLIRGGADLRVVQELLGHASLLTTQIYTHIQKQD----LKD 262

Query: 313 IYDQTHPSITQK 324
             +  HP   +K
Sbjct: 263 TVEVCHPMAKEK 274


>gi|297588425|ref|ZP_06947068.1| tyrosine recombinase XerC [Finegoldia magna ATCC 53516]
 gi|297573798|gb|EFH92519.1| tyrosine recombinase XerC [Finegoldia magna ATCC 53516]
          Length = 326

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 79/312 (25%), Positives = 137/312 (43%), Gaps = 28/312 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE---------------KITIQTIR 64
           ++L  LE  +G S  T++ Y  D    + ++    +                 + +   +
Sbjct: 10  DFLDYLETIKGRSSNTVKEYAYDINLMIKYIIARKQNIKLKSFDDIVKIDSSDVDLNFFK 69

Query: 65  QLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKS 122
            +   ++ +F+      +  G  +  R  S I++F KY +  RK+   +    + + KK+
Sbjct: 70  NIDVIDLHSFMGFLDHNRSNGSSTRSRKTSSIRTFYKYLINIRKLDIINPAELLDSPKKN 129

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
              P  L   ++L L+  +L     E K   AR+  I  L   CG+R+SE  S+   +I 
Sbjct: 130 IRQPVYLTLDESLNLLKVILREKDEEIK---ARDYCITVLFLNCGMRLSELSSINIDHI- 185

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
              +TLR+ GKG+K R V L      A+  Y  + P   N      LF   +   ++   
Sbjct: 186 -KTNTLRVIGKGNKERTVYLNDMCLDALDNYLKIRPEIDN----DALFISKKRNRMSNRA 240

Query: 243 FQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTN 300
            Q  I    +  G   S  + H LRH+ AT +   G  D++ +Q ILGH  +STTQIYT+
Sbjct: 241 IQYRIEHYLKAGGFDTSIYSVHKLRHTAATLMYQYGNVDIKVLQEILGHESVSTTQIYTH 300

Query: 301 VNSKNGGDWMME 312
           V++ +    + +
Sbjct: 301 VDNNSLRSAVNK 312


>gi|222080177|ref|YP_002540040.1| integrase/recombinase [Agrobacterium vitis S4]
 gi|221738822|gb|ACM39601.1| integrase/recombinase [Agrobacterium vitis S4]
          Length = 335

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 60/302 (19%), Positives = 127/302 (42%), Gaps = 20/302 (6%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQ 81
           +++  +RG S  + ++Y    R   +F A     + ++  + Q+    + AF+      +
Sbjct: 14  EHMPQQRGYSPHSCEAYAYSFRLLFVFAAGRLHTRPSLLHLEQIDADMVLAFLHHIEHDR 73

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPRALNEKQALTLV 138
             G  +    L+ IK+F++Y++ R       I  +  +   +  + L R L   +   ++
Sbjct: 74  GNGASTRNLRLAAIKAFMRYVELRHPNALEQIAQINAIPGKRHDHKLIRHLTMDEVRAVL 133

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLRIQGKGDKI 197
           D            +  R+ A+L+L +  GLR+SE + LT +N+    S ++ + GKG + 
Sbjct: 134 D-----APDIKTRLGLRDRAMLHLCFAGGLRVSELVGLTLENVTLQPSPSILVFGKGRRE 188

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG-- 255
           R +PL     + +  +  +            LF   +G  +    F+  + +  +     
Sbjct: 189 RSLPLWKETARDVRAWLAVR----GKPPVTELFVNAQGMAMTRAGFEYILEKHAKAAAAR 244

Query: 256 ----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               +    + H LRHS A  +L    D+R +   LGH  + TT++Y  ++     + + 
Sbjct: 245 CPTLIGRPLSPHLLRHSCAVLMLQATRDIRKVALWLGHADIRTTEVYLRMDPSEKLEAIE 304

Query: 312 EI 313
            +
Sbjct: 305 AV 306


>gi|225629572|ref|ZP_03787600.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
 gi|225591574|gb|EEH12586.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
          Length = 280

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 79/286 (27%), Positives = 131/286 (45%), Gaps = 21/286 (7%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
             L  ER  ++ TL+SY  D  Q   FL        +  T+  ++ T I+ ++    TQK
Sbjct: 1   DALASERSATQNTLESYRSDLHQLEEFLLE------SGTTLVGVNKTNIKDYVKSLCTQK 54

Query: 83  -IGDRSLKRSLSGIKSFLKYLKKRKITTESNI----LNMRNLKKSNSLPRALNEKQALTL 137
                S+ R +S +K+F K L    I   +        ++N K S  LP+ L+ ++   L
Sbjct: 55  KYKSSSISRKISAMKNFYKCLFNDGIIDFNPAPANDAELKNPKVSRPLPKYLSVEEIFLL 114

Query: 138 VDNVLLHTSHETKWIDARNS-AILYLLYGCGLRISEALSLTPQ------NIMDDQSTLRI 190
           +D V    S   K I ++   AIL +LY  G+R+SE +S+         N  + +  + I
Sbjct: 115 MDAVRKSASESNKEISSKRLCAILDILYSSGMRVSELISMKLCEVSHLINSNNKECYIII 174

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGK-PLNPGVFQRYIR 248
           +GK  + R +       +++  Y  +    L N      LF G +   P+      + ++
Sbjct: 175 KGKSGRERQILFNEQALQSLRNYLSVRDNLLSNRKESDWLFPGDKPNKPITRQRVAQLMK 234

Query: 249 QLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           +L R   +     + H +RHSFATHLL +G ++  IQ +LGH  LS
Sbjct: 235 ELARKCNIDENKISPHVIRHSFATHLLDSGANIVLIQKVLGHTNLS 280


>gi|258648850|ref|ZP_05736319.1| phage-related integrase [Prevotella tannerae ATCC 51259]
 gi|260850864|gb|EEX70733.1| phage-related integrase [Prevotella tannerae ATCC 51259]
          Length = 341

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 77/315 (24%), Positives = 135/315 (42%), Gaps = 16/315 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RR 79
           +   L  E GLS  T+++Y      F+ F+      K    ++  L+   +  F+     
Sbjct: 13  FTSYLSGECGLSHNTIRAYGNTFLSFIDFMEKTRRVKADRLSLEHLTRDNVSDFLRWTEE 72

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR---ALNEKQALT 136
            +  G  +  + L+   +F KY+    I       ++ ++K   S  +    L+      
Sbjct: 73  NKGCGISTRNQRLAAFHTFSKYMLYGDIFHLEQWQSILSIKSKRSEKQSVSYLSVDGIKL 132

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGD 195
           L+  + ++T +       R+ A++ LLY  G R+ E + LTP ++       + + GKG 
Sbjct: 133 LLSLIPVNTRN-----GLRDLALIALLYDSGARVQELIDLTPMDLHLVKPYYVSLFGKGR 187

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R+VPL     + + +Y +          Q PLF   RG+ L        + +  R   
Sbjct: 188 KRRLVPLQEQQVELLKKYMEAEGLLKQSLNQHPLFANNRGEKLTNAGVTFILMRYVRNAH 247

Query: 256 L------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           +      P   + H+LRHS A HLL  G +L  I+ ILGH  + TT+IY   +SK   + 
Sbjct: 248 VADPDLVPAKVSPHSLRHSKAMHLLQAGVNLVYIRDILGHVSIQTTEIYARADSKQKREA 307

Query: 310 MMEIYDQTHPSITQK 324
           +   Y    P++ +K
Sbjct: 308 LEAAYIDVIPTMDKK 322


>gi|323709096|gb|ADY02569.1| IntI1 integron integrase [Aeromonas media]
          Length = 310

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 74/329 (22%), Positives = 134/329 (40%), Gaps = 64/329 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 NGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           SFAT LL +G D+R++Q +LGH  +STT 
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTTM 310


>gi|254452706|ref|ZP_05066143.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198267112|gb|EDY91382.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 320

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 74/279 (26%), Positives = 129/279 (46%), Gaps = 27/279 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R L   +  S+    ++F  +L          ++    +  +++ F        +   + 
Sbjct: 39  RNLGPASQSSHLRACKRFAAWLG---------RSPETATPDDVKYFQQHLIESGVSICTR 89

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            ++++G+K  L+   +R       +  + +LK+   +P  L++K+   ++          
Sbjct: 90  NQTMTGVKFLLRVTLRRH----DLVAEIFHLKEPVKVPLVLSKKEIKRILAM-------- 137

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR 207
                 +   +L L YGCG+R  E + L   +I  DQ  +RI Q KG K RIV L   + 
Sbjct: 138 --APSLKARVMLSLAYGCGMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDIL 195

Query: 208 KAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             + +++   P   + ++  P   LF   RGK L+     R  ++  R  G+    T HT
Sbjct: 196 SLLRDWWKERPTGQDKDVPAPERVLFPSYRGKHLSARQISRLFKETAREAGITKPVTLHT 255

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           LRHSFATHLL  G D+R IQ++LGH +L+TT  Y +V +
Sbjct: 256 LRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVAT 294


>gi|227515184|ref|ZP_03945233.1| integrase XerD [Lactobacillus fermentum ATCC 14931]
 gi|227086516|gb|EEI21828.1| integrase XerD [Lactobacillus fermentum ATCC 14931]
          Length = 292

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 61/285 (21%), Positives = 116/285 (40%), Gaps = 17/285 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   Q WL     ++G +KLT+ SY  D R    +L         +   +Q+    + A+
Sbjct: 12  LVSYQEWL----TKKGGAKLTIASYLTDLRDTAAYLTSR-----GVTNWQQVDRATLTAY 62

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +     +     +++R +S ++ F  YL+         +  ++  +     P  L  ++A
Sbjct: 63  LQSLNDKGRRTTTIQRRISSLRRFYAYLQVTGQVNHDPVALLKAKQTPRLAPVGLTPQEA 122

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L D+V        +     N A++ LL   G R +E   L   ++  +   + +    
Sbjct: 123 DLLPDHVPGKGVARER-----NRALVALLVATGARANELRDLQTGDLDLELGVVYL--GQ 175

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
              R+VPL    +  +  Y      D +   +  +F   RG+PL+       +    +  
Sbjct: 176 SSRRLVPLNEQAQTYLTTYLTAR-ADQSATDEGYVFLNNRGQPLSRQSIWEIVNATGQRA 234

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            +  + T   +R  FA  LL++G DL  +Q ++GH  + TTQ+Y 
Sbjct: 235 NIEGAVTPQRVRDGFAYRLLAHGADLSLVQQLMGHQSILTTQVYL 279


>gi|308172775|ref|YP_003919480.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens DSM 7]
 gi|307605639|emb|CBI42010.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens DSM 7]
          Length = 321

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 66/317 (20%), Positives = 137/317 (43%), Gaps = 17/317 (5%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           PEI   +       +++  +I + LS+ TL+ Y  +   F   L          +    +
Sbjct: 19  PEIELTDFETAYNAFIRECKI-KNLSEHTLKYYRNELLSFRSMLEQQGVSTRPEKITLPI 77

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
               +  ++  +      + S+   L  I++F  +L+K ++  ++    +  +K+   + 
Sbjct: 78  LKENVIVYMMDKL--GRKETSINTRLRAIRAFFNFLEKNRMIGDNPAKELSLVKQKKEVI 135

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
              + +Q   +     L    +  +   R+  I+ LL   G+R+ E   ++ ++I  + S
Sbjct: 136 ETFSREQLRDI-----LRQPDQGTFTGFRDYTIMLLLIETGVRVRELTDISVKDIRWEDS 190

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            + I GKG K R+VP+  +V+  + +Y  +     N      LF  I   PL     Q  
Sbjct: 191 QILINGKGYKERLVPIQSTVKTRLRKYVQIRGDVPN----DALFVTIDNTPLTTRQVQNR 246

Query: 247 IRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           + +  R   +  +  + HT RH+FA   + NG D+ ++Q++LGH  L   + Y N+ S++
Sbjct: 247 LSKYGRMANIKNVRCSPHTFRHTFAKMSVQNGADVFALQAVLGHSSLDMVRNYVNLFSRD 306

Query: 306 GGDWMMEIYDQTHPSIT 322
               +M+ + +  P   
Sbjct: 307 ----VMDAHKKFSPVEK 319


>gi|256751764|ref|ZP_05492637.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749292|gb|EEU62323.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 307

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 71/306 (23%), Positives = 145/306 (47%), Gaps = 15/306 (4%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             Q+++++ +  + LS +++  Y+ D ++F  ++      +  I  I+ ++   I+++  
Sbjct: 6   AIQDFIEDRKF-KNLSPVSINGYQRDLQEFYNWIT-----QQGILNIQDITPHHIKSYFM 59

Query: 77  KRRTQKIG-DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
             + +K     +L   L+ +++F  Y+ + KI  E+ +  +   K    +  A  ++Q  
Sbjct: 60  HLKNEKNNNPVTLNHKLTNLRAFFNYMVQEKILKETPV-KIEKQKTDVKI-EAFTDEQVY 117

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            ++         E  +   RN  I+    G G+R+SE ++L  ++I      + + GK  
Sbjct: 118 QMLRYFRKLKQREKTFYAYRNYLIILTFLGTGIRLSEIVNLKWRDIDLINDKITVYGKSR 177

Query: 196 KIRIVPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K R +PL   +R+   EYY  C   ++N      +F  IR K L+        R+L++ +
Sbjct: 178 KQRTIPLQERLREEFKEYYAFCKKNNINFTDDDYVFTDIRKKQLSKNAIHLVFRRLKKVM 237

Query: 255 GLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           G   +    HT RH+FA + + +GGD+ S+Q +LGH  +  T  Y ++     G  + E 
Sbjct: 238 GWKNVKLAPHTFRHTFAKNWILSGGDVFSLQRVLGHQSIEMTNRYVSL----FGSALKEQ 293

Query: 314 YDQTHP 319
            D+ +P
Sbjct: 294 NDKYNP 299


>gi|261420932|ref|YP_003254613.1| integrase [Geobacillus sp. Y412MC61]
 gi|319768580|ref|YP_004134080.1| integrase family protein [Geobacillus sp. Y412MC52]
 gi|261377390|gb|ACX80131.1| integrase family protein [Geobacillus sp. Y412MC61]
 gi|317113446|gb|ADU95937.1| integrase family protein [Geobacillus sp. Y412MC52]
          Length = 304

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 64/312 (20%), Positives = 129/312 (41%), Gaps = 23/312 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +L+E +++L+     +G S  T+ SY  D  QFL  L    ++ +T   IR+     I+ 
Sbjct: 1   MLREYEDYLR----GKGYSPNTVLSYLNDVNQFLKDLNLRPDDYVTSADIRKW----IQQ 52

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS---NSLPRALN 130
            +     +     ++ R L+ +++F  +  ++    ++ +  + +LK +         L 
Sbjct: 53  MLHPDEGKPFAVSTINRRLNALRNFYGWAVEQGYVEQNPMNGIADLKTADEDQETIMWLT 112

Query: 131 EKQALTLVDNVLLHTSH----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           E++   L+  +    +H    + +    R+ AI+YL    GLR+ E  +L   +I  +  
Sbjct: 113 EEEFEDLLHRMRKMLAHSRGVDPEEKYRRDRAIVYLFVYAGLRVEELSNLKLTDIDLEMK 172

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGV 242
            LRI GKG K+R VP+   +   + ++             +     +F   R    +   
Sbjct: 173 RLRIVGKGMKVRTVPISNILLAELQDWLAFRAEMSKKKPHVAASPYVFYSQRSPKFSVRG 232

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIYTNV 301
            QR +             T H  RH+F   +L     D+  ++ + GH  ++TT  Y   
Sbjct: 233 IQRMVEGYSL---PGKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSHIATTSRYLKD 289

Query: 302 NSKNGGDWMMEI 313
           +  +  D +  +
Sbjct: 290 SYSDLADAVEAL 301


>gi|225174941|ref|ZP_03728938.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169581|gb|EEG78378.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
          Length = 286

 Score =  179 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 74/302 (24%), Positives = 130/302 (43%), Gaps = 20/302 (6%)

Query: 14  LLKERQNWLQNL-EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
            L   + + Q + +IER  S +T+  Y  D R F  ++       + ++ I+     +I 
Sbjct: 3   FLDTIEQFQQYMNDIER--SPVTIALYLRDLRYFGSYMEKKHNGPVYLEDIKS---ADIE 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F+   + + I   S  R L  ++SF K+  K+++      L +  +K        L+++
Sbjct: 58  GFLRSLKERNIAPNSRSRYLYTLRSFYKFAYKKELVERDISLAVDLVKLPTKERHYLSQQ 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQ 191
           +   L D             +     I+  L   GLRISE + LT  ++  D+  +  I 
Sbjct: 118 EVAELAD----------TITNDLVRLIVIFLANTGLRISECIKLTMDDVDLDKGIIHVIS 167

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG+K R VP+   +   +++Y D      N N     F   +   ++       +RQ  
Sbjct: 168 GKGNKDRNVPINNKLLPLLIDYKDNWRDAYNSNF---FFATKKTGTISNTYVNNTLRQAV 224

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           + LG   + + H LRHSFAT L+     L  IQ +LGH  L  T +Y + + +   D + 
Sbjct: 225 QSLGWKKNVSCHILRHSFATSLVKQKVGLVEIQKLLGHSDLKITSVYMHADLEQLQDAVN 284

Query: 312 EI 313
            +
Sbjct: 285 AL 286


>gi|253581279|ref|ZP_04858533.1| transposase [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847433|gb|EES75410.1| transposase [Ruminococcus sp. 5_1_39BFAA]
          Length = 285

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 129/298 (43%), Gaps = 30/298 (10%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +  F + +E  N +++   +R L   T+ +Y      FL           T + I  L+ 
Sbjct: 1   MEDFIMYEEIFNQIRSAANKRNLKDSTIHAYCTSVAHFL---------NRTAKDIDALTT 51

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++  F+++++   I   +     SGI+ F K + K+    +     +  +K+   LP  
Sbjct: 52  DDVDIFLTEKKLSGISPETYNHYHSGIRFFYKKILKKNWDDDD----IPRMKRDRKLPTV 107

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L + +   ++D             + ++ A++  +Y  GLR+SE   L   +I     T+
Sbjct: 108 LTKAEISAILDAT----------PNLKHKAMIATMYSGGLRVSEVTHLHYDDISRTNKTI 157

Query: 189 RIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRY 246
            I+ GK    R   L     + + EY+  C        +  LF        L      ++
Sbjct: 158 HIRDGKSRSDRYTLLADRTLEILTEYWFQC-----GRPRGILFPSSWTGDYLTKDSVIQF 212

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            R+     G+    + H LRHSFA+HL  +G D++ IQ++LGH    +T+IY +V++K
Sbjct: 213 FRESAERAGIQKHVSTHCLRHSFASHLFESGCDIKYIQALLGHRDPKSTEIYLHVSNK 270


>gi|311234212|gb|ADP87066.1| integrase family protein [Desulfovibrio vulgaris RCH1]
          Length = 490

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 73/173 (42%), Positives = 97/173 (56%), Gaps = 5/173 (2%)

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           + I  R+ A+  LLYG GLRISEAL L   +       +R+ GKG K R+ PL  +   A
Sbjct: 272 EAIRRRDLALAELLYGSGLRISEALGLDVLDADPSAGVVRVLGKGSKERMSPLSDTSVDA 331

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           + E+       L    +  LF G RG  L+     R I  L R  GLP S + H LRHSF
Sbjct: 332 LREWLHFRHH-LASEGERALFVGARGDRLDRRQATRIIDALCRRAGLPQSVSPHGLRHSF 390

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           ATHLL  G DLRS+Q +LGH RL+TTQ YT++   +    ++E+YD+ HP  +
Sbjct: 391 ATHLLEAGADLRSVQELLGHARLATTQRYTHLTLAH----LIEVYDKAHPRAS 439



 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 60/129 (46%), Gaps = 3/129 (2%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
              + +  + +L ++E+E+G S  T+ +Y  D  QF       T E   +     ++   
Sbjct: 55  DAAVPETLELFLAHVELEKGYSPATVTAYGTDLMQF---HGVLTAEGFGLDAPEDVTRRH 111

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           ++ ++++    +    S+ R LS +++F +Y+ + +  T   +  + N ++    PR LN
Sbjct: 112 VQRYLAELHRLRTARSSVARKLSALRAFFRYMLRLRRVTADPVAAVHNPRQEKRQPRTLN 171

Query: 131 EKQALTLVD 139
             Q   L+D
Sbjct: 172 VDQVFALLD 180


>gi|116626672|ref|YP_828828.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229834|gb|ABJ88543.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 371

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 71/305 (23%), Positives = 116/305 (38%), Gaps = 24/305 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   L  +R +S  T+ SY    R  L F      +  +   +  L  + + AF+     
Sbjct: 15  FTTRLMAQRKVSPHTIASYRDTFRLLLQFAQKRLRKAPSQLGLDDLDASLVGAFLEDLEN 74

Query: 81  QKI-GDRSLKRSLSGIKSFLKYLKKR-----KITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++  G RS    L+ I+SF +Y          I     +L + N ++  +L   L   + 
Sbjct: 75  RRHNGARSRNLRLTAIRSFFRYASLEAPAHSGIIQR--VLAIPNQRQRRALVGFLTRPEI 132

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLRIQGK 193
             L     L   + T+W+  R+ A L      GLR+SE   L  +++       +R +GK
Sbjct: 133 EAL-----LAAPNRTQWLGRRDHAFLLTAVQTGLRLSEMTGLRQEDVSLGAGAHVRCRGK 187

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R  PL       +  +      +        LF   RG PL+    Q  + +    
Sbjct: 188 GRKERCTPLAKPTAAVLKAWI----REQGRGDSKTLFPSTRGGPLSADGVQHLLARHVAQ 243

Query: 254 LGL------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                        + H LRH+ A  LL  G D   I   LGH  + TTQIY + +     
Sbjct: 244 ARKHCASLRKKRVSPHVLRHAAAMELLQGGVDRAVIALWLGHESVETTQIYLDADLALKE 303

Query: 308 DWMME 312
           + + +
Sbjct: 304 EALAK 308


>gi|312195601|ref|YP_004015662.1| integrase family protein [Frankia sp. EuI1c]
 gi|311226937|gb|ADP79792.1| integrase family protein [Frankia sp. EuI1c]
          Length = 422

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 85/365 (23%), Positives = 138/365 (37%), Gaps = 75/365 (20%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L +L  ERGL+  ++ +Y  D R++  +L         + ++  +    +  F +  R
Sbjct: 33  RYLGHLAGERGLAHNSVLAYGRDLRRYHEYLTAR-----GLTSLADVDEATLGEFATALR 87

Query: 80  TQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE--- 131
                   +   S+ R L  ++S  ++ ++     E     +R       LP+AL     
Sbjct: 88  GGDGEHPPLAAASVARMLVAVRSLHRFAQREGSLVEDVSQPVRPPAPPRRLPKALTVDQV 147

Query: 132 -------------------------------------------KQALTLVDNVLLHTSHE 148
                                                      ++A   V++       E
Sbjct: 148 LAVLVAAGGAAPDAERATSDADRVASDAGRAAPDAERSAAQPAEEAEPTVESDEAGGP-E 206

Query: 149 TKWIDARNSA----------ILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDK 196
                  + A          +L LLYG G RISEA+ L   ++  DQ+T  +R++G   +
Sbjct: 207 PDAESLADRAEAVRRLRSAALLELLYGTGARISEAVGLDLDDLDLDQATASVRLRGGNGR 266

Query: 197 IRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R+VPL      A+  Y     P   +      +F   RG  L+       +R      G
Sbjct: 267 DRVVPLGRCAVAALSLYLSRGRPVLESAGSGTAVFLSRRGGRLSRQSAWSALRAAAEAAG 326

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    + H LRHSFA HLL  G D+R +Q +LGH  + TTQIYT V      D + E+Y 
Sbjct: 327 IE-GVSPHVLRHSFALHLLDGGADVRVVQELLGHASVRTTQIYTLV----PADQLREVYA 381

Query: 316 QTHPS 320
             HP 
Sbjct: 382 AAHPR 386


>gi|182413037|ref|YP_001818103.1| integrase family protein [Opitutus terrae PB90-1]
 gi|182414797|ref|YP_001819863.1| integrase family protein [Opitutus terrae PB90-1]
 gi|182416164|ref|YP_001821230.1| integrase family protein [Opitutus terrae PB90-1]
 gi|182416190|ref|YP_001821256.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177840251|gb|ACB74503.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177842011|gb|ACB76263.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177843378|gb|ACB77630.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177843404|gb|ACB77656.1| integrase family protein [Opitutus terrae PB90-1]
          Length = 336

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 77/324 (23%), Positives = 134/324 (41%), Gaps = 25/324 (7%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M   +LP ++       R  + Q+L  +RGLS  T+ SY    +  L F +  + +++T 
Sbjct: 1   MSAPDLPSLI-------RGFFDQHLVSQRGLSGHTVLSYRDTFKLLLKFASDDSGKRVTE 53

Query: 61  QTIRQLSYTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLK---KRKITTESNILNM 116
            T+  L+   +  F+      ++ G  +    L+ I SF +YL     R +T    I+ +
Sbjct: 54  LTLADLTAELVHGFLRHLEADRRNGIVTRNLRLAAIHSFFRYLAIVDPRHLTHAHTIIAV 113

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              ++ + + + L + +   +   +             R+ A+L +LY  G+R  E + L
Sbjct: 114 PFKRRPHRVAQFLEKDEVQEIFRQI-----DSRTLFGQRDDALLRMLYNTGMRAQELVDL 168

Query: 177 TPQNIMDDQ-STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
             +++   + S + I GKG K R  PL P    A+  Y       +     +PLF  I G
Sbjct: 169 DVRHVRFTRPSNVLIFGKGRKERTCPLWPETVAALKSYLQPR--SIKFTDAVPLFLNIDG 226

Query: 236 KPLNPGVFQRYIRQLRRYLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
             L     +  +              L    T HT RH+ A HLL +  DL  I+S LGH
Sbjct: 227 NRLTRFGVRYIVSHRISEAAQRCPTLLARRITPHTWRHTTAMHLLQSNVDLAMIRSWLGH 286

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEI 313
             + TT  Y  ++ +     +   
Sbjct: 287 ASIETTNTYVEIDLEMKRKALASA 310


>gi|331091113|ref|ZP_08339955.1| hypothetical protein HMPREF9477_00598 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405335|gb|EGG84871.1| hypothetical protein HMPREF9477_00598 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 353

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 63/306 (20%), Positives = 122/306 (39%), Gaps = 24/306 (7%)

Query: 32  SKLTLQSYECDTRQFLIFL-------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI- 83
           S  T  SY  D R F  FL         Y      +  + +++  +I  +    +  +  
Sbjct: 43  SVKTRISYAYDIRIFFKFLLENNPVYKSYKMTDFQVSDLERIAPVDIEEYQEYLKVYQNE 102

Query: 84  ------GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                  ++ L R +S ++SF  Y  K ++  ++  L +   K  +     L+  +   L
Sbjct: 103 DKQITNAEKGLARKMSALRSFYNYYYKHQMIEKNPSLFVDMPKIHDKAIVRLDTDEVALL 162

Query: 138 VDNVLLHTSHETKWIDAR-------NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           ++ V    +  T             + AIL LL G G+R+SE + L   +I    + +++
Sbjct: 163 LEYVENCGNQLTGQKKVYYEKNKTRDLAILTLLLGTGIRVSECVGLDIPDIDFKNNGIKV 222

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIR 248
             KG    +V   P VRKA+++Y +     +      +  LF   + K +     +  ++
Sbjct: 223 MRKGGNEMVVYFGPEVRKALIDYLETTRNTITPLPEHENALFLSTQKKRMGVQAVENMVK 282

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGG 307
           +  R +      T H LR ++ T L    GD+  +  +LGH  ++TT + Y  ++     
Sbjct: 283 KYAREVTPNKKITPHKLRSTYGTSLYKETGDIYLVADVLGHRDVNTTKKHYAAIDDARRR 342

Query: 308 DWMMEI 313
                +
Sbjct: 343 QAASAV 348


>gi|150388279|ref|YP_001318328.1| phage integrase domain/SAM domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|150389751|ref|YP_001319800.1| phage integrase domain/SAM domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|150392024|ref|YP_001322073.1| phage integrase domain/SAM domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149948141|gb|ABR46669.1| phage integrase domain protein SAM domain protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149949613|gb|ABR48141.1| phage integrase domain protein SAM domain protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149951886|gb|ABR50414.1| phage integrase domain protein SAM domain protein [Alkaliphilus
           metalliredigens QYMF]
          Length = 332

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 131/295 (44%), Gaps = 28/295 (9%)

Query: 22  LQNLEIER--GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           L  L  ++  GL+  TL+ Y  +  +F  ++          + +  ++  +IR +++   
Sbjct: 58  LLYLASKKIDGLAMRTLEGYSRNLNRFAYYMR---------KNVEDVTTMDIRMYLASYA 108

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              + + ++      ++ F ++L+  +   +S +  +++LK    + +AL  ++   L D
Sbjct: 109 KTGVKNGTIGTETDILRGFFRWLEDEEYINKSPLRKIKSLKPEKRIRKALTNEEMEILRD 168

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
               +             A+L   Y  G R+ E  ++   +I   +  L++ GKG+K R 
Sbjct: 169 GCKTYRQ----------KALLEFFYSTGCRLEEVENVKKYDIDWQRLQLKVIGKGNKERT 218

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK--PLNPGVFQRYIRQLRRYLGLP 257
           V +    +  I +Y         L+ +  LF   R     L     +R   ++ +  G+ 
Sbjct: 219 VYINAKAKVHIQKYLMAR-----LDEEEALFVTERNPVKKLGRRSIEREFDKIEKTSGIK 273

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            S   H +RH+ ATHLL++G DL ++Q+ILGH   S TQIY  +++ N      +
Sbjct: 274 KSIYPHLIRHTMATHLLNSGADLGTVQAILGHEDASITQIYAQISNTNVEHEYRK 328


>gi|239828723|ref|YP_002951346.1| integrase family protein [Geobacillus sp. WCH70]
 gi|239809016|gb|ACS26080.1| integrase family protein [Geobacillus sp. WCH70]
          Length = 304

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 66/312 (21%), Positives = 129/312 (41%), Gaps = 23/312 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +L E + +LQ    E+G S  T+ SY  D  QFL  L     + +T   IR+     I+ 
Sbjct: 1   MLHEYETYLQ----EKGFSPNTVISYLNDVNQFLKDLHLRPGDYVTSADIRKW----IQQ 52

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK---KSNSLPRALN 130
            ++    + +   ++ R L+ ++SF  +        ++ + ++++LK   + N     L 
Sbjct: 53  MLNPVEGKPLAISTINRRLNSLRSFYAWAVAHHKLEQNPMRDIQDLKSADEENEKIMWLT 112

Query: 131 EKQALTLVDNVLLHTSH----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           E++   L+  +          + +    R+ A++YLL   GLR+ E  +L   ++  +  
Sbjct: 113 EEEFEDLLQRMRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMR 172

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGV 242
            +RI GKG K+R VP+   +   + ++             +     +F   R    +   
Sbjct: 173 RIRIVGKGMKVRTVPISNILLAELEDWLAFRAQMAKKKPHVATSPYVFYSQRSPKFSVRG 232

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIYTNV 301
            QR I             T H  RH+F   +L     D+  ++ + GH  ++TT  Y   
Sbjct: 233 IQRMIESYSL---PNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKD 289

Query: 302 NSKNGGDWMMEI 313
           +  +  D +  +
Sbjct: 290 SYSDLADAVEAL 301


>gi|17158102|ref|NP_478098.1| IntIdelta1 protein [Corynebacterium glutamicum]
 gi|17059621|emb|CAD12229.1| IntIdelta1 protein [Corynebacterium glutamicum]
          Length = 387

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 75/335 (22%), Positives = 137/335 (40%), Gaps = 66/335 (19%)

Query: 1   MEGNN--LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI 58
           M+ +   LP + S ++L + +  ++ L      S  T Q+Y    R F+ F         
Sbjct: 1   MKTSTAPLPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH-------- 48

Query: 59  TIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
            ++    L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  + 
Sbjct: 49  GVRHPATLGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIG 105

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             + S  LP  L   + + ++            +++  +     LLYG G+RISE L L 
Sbjct: 106 RPRPSRRLPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLR 154

Query: 178 PQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------ 212
            +++  D  T+ ++ GKG K R + L  S+  ++ E                        
Sbjct: 155 VKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPD 214

Query: 213 ------------YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
                       +     F  + +   P    +R   +    FQR  ++     G+    
Sbjct: 215 ALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPA 274

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           T HTLRHSFAT LL +G D+R++Q +LGH  +STT
Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTT 309


>gi|114320950|ref|YP_742633.1| integron integrase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227344|gb|ABI57143.1| integron integrase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 462

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 139/314 (44%), Gaps = 60/314 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           RGL+  T ++Y   T +F++FL          + +      +++ F+S+  TQ+ +   +
Sbjct: 159 RGLAISTEKTYLAWTCRFIVFLQS--------KPVESADEADVQQFLSQLVTQRNVAAST 210

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++L+ +  F +Y+ +R +     +  +   K+   LP  L+  +   L+  +      
Sbjct: 211 QSQALNALVFFFRYVLQRPLGE---LQAIERSKRPRRLPVVLSRNEVKALLSEM------ 261

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
                   +  +  LLYG G+R+ EAL L  ++I  ++  + ++ GKGDK R+VPL  S 
Sbjct: 262 -----HGVHHLLASLLYGSGMRVMEALRLRVKDIDFERRAITVRSGKGDKDRVVPLPEST 316

Query: 207 RKAIL------------------------------------EYYDLCPFDLNLNIQLPLF 230
              +                                     E++    F        P  
Sbjct: 317 IAPLQNHLRQVKAIHEGDLADGYGEASLPHALARKYRNAGKEWHWQYVFPSARVAVDPRS 376

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             IR   L+    QR +++  R   +P   + HTLRHSFATHLL  G D+R++Q +LGH 
Sbjct: 377 GAIRRHHLHETAVQRAVKRAVRASRIPKQASCHTLRHSFATHLLERGQDIRTVQELLGHA 436

Query: 291 RLSTTQIYTNVNSK 304
            +STT IYT+V SK
Sbjct: 437 DVSTTMIYTHVMSK 450


>gi|268609724|ref|ZP_06143451.1| phage-specific recombinase/integrase XerD [Ruminococcus
           flavefaciens FD-1]
          Length = 342

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 62/304 (20%), Positives = 125/304 (41%), Gaps = 16/304 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + + L  ++ LS  T+++Y    +  LI+       K     +  +    +  F+     
Sbjct: 18  FKKYLPGQKNLSPNTIRAYADAFKLLLIYCEEEKGIKSDRLKLENIDRELVSGFLDWLEE 77

Query: 81  -QKIGDRSLKRSLSGIKSFLKYLK---KRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            +     +  + L  + SF +Y++      +    +++ +   K   ++   L EKQ   
Sbjct: 78  IRGCKTTTRNQRLIALHSFCRYVQKISPENMDNLQSVIQIDYKKSKKAIVPYLTEKQMKL 137

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQGKGD 195
           L+            W   R+  +L +LY  G R+ E   L  +++  +  + + + GKG+
Sbjct: 138 LL-----AQPDGNTWQLFRDKVMLAVLYDTGARVQELCDLRIKDVRLESPAVITLTGKGN 192

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K+R VP++   +K +  Y +    +  +     PLF   RG+ L+       I +     
Sbjct: 193 KVRQVPIMSGTQKLLKIYLEKHKGNAGISRGDNPLFVNQRGQKLSRWGVSHIIDKYVDMA 252

Query: 255 -----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                 +    TAH  RHS A H++  G +L  I+  LGH   +TT+IY  ++++     
Sbjct: 253 KEKGLDVDFPITAHVFRHSKAVHMVHAGINLIYIRDFLGHVDWATTEIYAKIDTETKRKA 312

Query: 310 MMEI 313
           +   
Sbjct: 313 IEAA 316


>gi|303233777|ref|ZP_07320431.1| site-specific tyrosine recombinase XerC [Finegoldia magna BVS033A4]
 gi|302495211|gb|EFL54963.1| site-specific tyrosine recombinase XerC [Finegoldia magna BVS033A4]
          Length = 326

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 80/312 (25%), Positives = 138/312 (44%), Gaps = 28/312 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE---------------KITIQTIR 64
           ++L  LE  +G S  T++ Y  D    + ++    +                 + +   +
Sbjct: 10  DFLDYLETIKGRSSNTVKEYAYDINLMIKYIIARKQNIKLKSFDDIVNIDSSDVDLNFFK 69

Query: 65  QLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKS 122
            +   ++ +F+      +  G  +  R  S I++F KY +  RK+   +    + + KK+
Sbjct: 70  NIDVIDLHSFMGFLDHNRSNGSSTRSRKTSSIRTFYKYLINIRKLDIINPAELLDSPKKN 129

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
              P  L   ++L L+  +L     E K   AR+  I  L   CG+R+SE  S+   +I 
Sbjct: 130 IRQPVYLTLDESLDLLKVILREKDEEIK---ARDYCITVLFLNCGMRLSELSSINIDHI- 185

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
              +TLR+ GKG+K R V L      AI  Y  + P   N      LF   +   ++   
Sbjct: 186 -KTNTLRVIGKGNKERTVYLNDMCLDAIDNYLKIRPEIDN----DALFISKKRNRMSNRA 240

Query: 243 FQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTN 300
            Q  I    +  G   S  + H LRH+ AT +   G  D++ +Q ILGH  +STTQIYT+
Sbjct: 241 IQYRIEHYLKIGGFDTSIYSVHKLRHTAATLMYQYGNVDIKVLQEILGHESVSTTQIYTH 300

Query: 301 VNSKNGGDWMME 312
           V++ +  + + +
Sbjct: 301 VDNNSLRNAVNK 312


>gi|46580471|ref|YP_011279.1| phage integrase family site specific recombinase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46449890|gb|AAS96539.1| site-specific recombinase, phage integrase family [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 474

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 73/173 (42%), Positives = 97/173 (56%), Gaps = 5/173 (2%)

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           + I  R+ A+  LLYG GLRISEAL L   +       +R+ GKG K R+ PL  +   A
Sbjct: 256 EAIRRRDLALAELLYGSGLRISEALGLDVLDADPSAGVVRVLGKGSKERMSPLSDTSVDA 315

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           + E+       L    +  LF G RG  L+     R I  L R  GLP S + H LRHSF
Sbjct: 316 LREWLHFRHH-LASEGERALFVGARGDRLDRRQATRIIDALCRRAGLPQSVSPHGLRHSF 374

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           ATHLL  G DLRS+Q +LGH RL+TTQ YT++   +    ++E+YD+ HP  +
Sbjct: 375 ATHLLEAGADLRSVQELLGHARLATTQRYTHLTLAH----LIEVYDKAHPRAS 423



 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 60/129 (46%), Gaps = 3/129 (2%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
              + +  + +L ++E+E+G S  T+ +Y  D  QF       T E   +     ++   
Sbjct: 39  DAAVPETLELFLAHVELEKGYSPATVTAYGTDLMQF---HGVLTAEGFGLDAPEDVTRRH 95

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           ++ ++++    +    S+ R LS +++F +Y+ + +  T   +  + N ++    PR LN
Sbjct: 96  VQRYLAELHRLRTARSSVARKLSALRAFFRYMLRLRRVTADPVAAVHNPRQEKRQPRTLN 155

Query: 131 EKQALTLVD 139
             Q   L+D
Sbjct: 156 VDQVFALLD 164


>gi|56475683|ref|YP_157272.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|58616519|ref|YP_195648.1| putative integrase [Azoarcus sp. EbN1]
 gi|58616531|ref|YP_195660.1| putative integrase [Azoarcus sp. EbN1]
 gi|56311726|emb|CAI06371.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|56315981|emb|CAI10624.1| putative integrase [Aromatoleum aromaticum EbN1]
 gi|56315993|emb|CAI10636.1| putative integrase [Aromatoleum aromaticum EbN1]
          Length = 332

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 77/315 (24%), Positives = 125/315 (39%), Gaps = 21/315 (6%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
             SF  L ER  + Q L  +R  S  T+ SY    RQFL F+     +  +  ++ ++  
Sbjct: 4   PASFAALLER-FFTQRLMQQRQASPHTISSYRDTFRQFLKFVQQRLHKSPSRLSLEEIDA 62

Query: 69  TEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI---LNMRNLKKSNS 124
             I AF+      +++  RS    L+ I SF +Y+        + I   L + + + + +
Sbjct: 63  PLIVAFLDDLEKCRRVSIRSRNLRLTAIHSFFRYVAFEAPEHSAQIQRVLAIPSKRFTRN 122

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           L   L   +   L+         +  W   R+ A L +    GLR+SE   L   +++  
Sbjct: 123 LVSFLARAEVDALL-----AAPDQHTWSGRRDHAFLLVAVQTGLRLSEMTGLKRDDLILG 177

Query: 185 QS-TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
               +R+ GKG K R  PL  S    +  +      +        LF   +G+ L+    
Sbjct: 178 AGAHVRVVGKGRKERCTPLAKSTLTVLKAWL----REPQRGEGDVLFPSAKGERLSVHGV 233

Query: 244 QRYIRQLRRYLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           Q  + + R               T H LRH+ A  LL  G D   I   LGH  + TTQI
Sbjct: 234 QYLLNKHRLAASEACPSLTQKRITVHRLRHTMAMDLLQAGVDRSVIALWLGHESVETTQI 293

Query: 298 YTNVNSKNGGDWMME 312
           Y + N +     + +
Sbjct: 294 YLDANLEMKEQALAK 308


>gi|288871476|ref|ZP_06410189.1| putative tyrosine recombinase XerC [Clostridium hathewayi DSM
           13479]
 gi|288863319|gb|EFC95617.1| putative tyrosine recombinase XerC [Clostridium hathewayi DSM
           13479]
          Length = 358

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 64/326 (19%), Positives = 126/326 (38%), Gaps = 25/326 (7%)

Query: 13  ELLKERQNWLQNL--EIERGLSKLTLQSYECDTRQFLIFL-------AFYTEEKITIQTI 63
           EL++E   +  +    IE   S  T  +Y  D + F  FL       A    + I++  +
Sbjct: 28  ELIRELPPFCADFFRGIEPRTSSRTRIAYAYDLKVFFDFLLKENPVIAKMDMKDISLDHL 87

Query: 64  RQLSYTEIRAFISKRRTQ--------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
             L   ++  ++   + +           +R + R +S +KSF  Y  + +    +    
Sbjct: 88  DNLKLVDMEEYMEYLKYRFNDKNQEITNKERGIMRKISSLKSFFNYYYRNERLVNNPAAL 147

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR------NSAILYLLYGCGLR 169
           ++  K        L+  +   L+D V    +   K           + A+L L+ G G+R
Sbjct: 148 VQLPKLHEKEIIRLDVDEVALLLDEVEKGEALTEKQKSYHEKTKLRDLALLTLMLGTGIR 207

Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLP 228
           +SE + L   ++      +RI  KG K   V     V  A+ +Y +           +  
Sbjct: 208 VSECVGLDIDDVDFKNGGIRIHRKGGKEVTVYFGSEVEDALNDYLEERKMIIAEEGHESA 267

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LF  ++ K L     +  +++  R +      T H LR ++ T+L     D+  +  +LG
Sbjct: 268 LFLSLQRKRLAVRSVENLVKKYARIVTPLKKITPHKLRSTYGTNLYKETNDIYLVADVLG 327

Query: 289 HFRLSTT-QIYTNVNSKNGGDWMMEI 313
           H  ++TT + Y  +  +       ++
Sbjct: 328 HADVNTTKKHYAALEDERRRSARNKV 353


>gi|257458544|ref|ZP_05623679.1| integron integrase [Treponema vincentii ATCC 35580]
 gi|257443978|gb|EEV19086.1| integron integrase [Treponema vincentii ATCC 35580]
          Length = 426

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 80/342 (23%), Positives = 145/342 (42%), Gaps = 64/342 (18%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           E +N P  +    +++    L  +   +  SK T ++Y     +F+         +   +
Sbjct: 98  EESNTPSALD---IQDILRKLDAVITAKHYSKRTQEAYSYWISRFI--------REHKDK 146

Query: 62  TIRQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            ++  S  EI  F+S+  T +K+   S  ++L+ +    K +    +T +S   N+   K
Sbjct: 147 NLKAFSDAEINPFVSRLATKEKVAASSQNQALAALLFLYKNIL--GLTIQSP-ENIIRAK 203

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS-AILYLLYGCGLRISEALSLTPQ 179
           KS  LP  L+ ++   +              +   +    + LLYG G+R+ E+L L  Q
Sbjct: 204 KSKKLPAVLSREETAKIF-----------SLLPENDYGLFIRLLYGTGMRLMESLRLRVQ 252

Query: 180 NIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL----------- 227
           +I  D++ + +  GKG K R   L  S++  + ++ +        + +            
Sbjct: 253 DIDFDKNEITVHCGKGAKDRKTMLPVSLKFPLQKHLENVRRIHEADCKDGFGLVPLPSAL 312

Query: 228 --------------PLFRGIRGK-----------PLNPGVFQRYIRQLRRYLGLPLSTTA 262
                          +F   R              ++P V QR + +     G+P     
Sbjct: 313 AKKYPNAGKTWAWQWVFPQARRWQNKETGEQGRHHIDPSVIQRTLHEAVLRSGIPKPIGC 372

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           HT RHSFATHLL +G D+R+IQ +LGH  +STT +YT+V ++
Sbjct: 373 HTFRHSFATHLLESGYDIRTIQELLGHSDVSTTMVYTHVLNR 414


>gi|327398234|ref|YP_004339103.1| integrase family protein [Hippea maritima DSM 10411]
 gi|327180863|gb|AEA33044.1| integrase family protein [Hippea maritima DSM 10411]
          Length = 283

 Score =  179 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 80/297 (26%), Positives = 136/297 (45%), Gaps = 31/297 (10%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQ 81
           ++L I++  S+ T   Y    + F ++           + +  ++  +I ++I    +++
Sbjct: 9   KDLLIQKRYSQNTQDIYYSYFKDFCVYFQN--------EKLMNITTAQINSYILDLIKSK 60

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            I      + ++ IK + + +       E     +   KK + LP+ L++K+   + D  
Sbjct: 61  NISISQQNQRINAIKFYYEKVMG----GEKQYYELHRPKKEHKLPKVLSKKEVKIIFDVT 116

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIV 200
                      + ++  IL L+Y  GLR SE L+L P +I  ++  + I G KG K RI 
Sbjct: 117 ----------SNLKHKCILMLIYSAGLRRSEPLNLAPTDIDSERMIIHINGAKGKKDRIS 166

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
            L  ++   +L+YY           Q  LF G +G   +P      +++     G+  + 
Sbjct: 167 LLSDNLLNLLLKYY------KEYRPQKYLFEGQKGGMYSPTSIANILKKAAIKAGIKKTV 220

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           T H LRHSFATHLL  G DLR IQ +LGH    TT+IYT+V+ K   D +    D  
Sbjct: 221 TPHMLRHSFATHLLEQGTDLRYIQELLGHESSKTTEIYTHVS-KKAIDKIKNSMDDF 276


>gi|226324982|ref|ZP_03800500.1| hypothetical protein COPCOM_02774 [Coprococcus comes ATCC 27758]
 gi|225206330|gb|EEG88684.1| hypothetical protein COPCOM_02774 [Coprococcus comes ATCC 27758]
          Length = 358

 Score =  179 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 63/308 (20%), Positives = 119/308 (38%), Gaps = 31/308 (10%)

Query: 32  SKLTLQSYECDTRQFLIFL-------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--- 81
           S  T  SY  D R F  FL         ++ +   +Q +  +   +I  ++   +     
Sbjct: 43  SPKTRISYAYDIRLFFQFLIEENPVYKHHSIKDFQVQDLEAIQPVDIEEYLEYLKVYDTT 102

Query: 82  ----------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
                        +R L R +S ++SF  Y  KR+I  ++  L +   K  +     L+ 
Sbjct: 103 DVHTKETKQVTNSERGLFRKMSALRSFYNYFFKRQIIQKNPTLFVDMPKLHDKAIIRLDT 162

Query: 132 KQALTLVDNVLLHTSHETKW-------IDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
            +   L+D V    S  T            R+ AI+ LL G G+R+SE + L   ++  +
Sbjct: 163 DEVAKLLDYVESCGSKLTGQALSYYNKTKERDIAIITLLLGTGIRVSELVGLDLSDVDFN 222

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN--LNIQLPLFRGIRGKPLNPGV 242
            + + +  KG    +V     V KA+  Y +     +      +  LF   + + +    
Sbjct: 223 NNGVMVTRKGGSQMVVYFGEEVEKALRNYLETYRKAVTPLAGYENALFLSTQKRRIGVQA 282

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
            +  +++    +      T H LR ++ T L    GD+  +  +LGH  ++TT + Y  +
Sbjct: 283 VENMVKKYASQIT-NKRITPHKLRSTYGTALYKETGDIYLVADVLGHKDVNTTKKHYAAI 341

Query: 302 NSKNGGDW 309
           +       
Sbjct: 342 DEDRRRSA 349


>gi|193214605|ref|YP_001995804.1| integrase family protein [Chloroherpeton thalassium ATCC 35110]
 gi|193088082|gb|ACF13357.1| integrase family protein [Chloroherpeton thalassium ATCC 35110]
          Length = 289

 Score =  179 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 80/307 (26%), Positives = 145/307 (47%), Gaps = 32/307 (10%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E+ +  + + +NL I++  S+ T   Y    + F ++           + + +L+  +I 
Sbjct: 9   EMEEVLRRY-KNLLIQKRYSQNTQDIYCSYFKDFCMYFGE--------EELEKLTTKQIN 59

Query: 73  AFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           ++I    +++ I      + ++ +K + + +  R    E     +   +K N LP+ L++
Sbjct: 60  SYILDLIKSKNISISQQNQRINAVKFYFEKVLGR----EKQYYELHRPRKENKLPKVLSK 115

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            +  +++ +            + ++  IL L+Y  GLR SE L+L P +I   +  + I 
Sbjct: 116 NEVKSILVSTD----------NIKHKCILMLIYSAGLRRSELLNLKPTDIDSGRMLIHIL 165

Query: 192 G-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           G KG K RI  L  ++ K + +YY         + +  LF G+ G   +P      +++ 
Sbjct: 166 GAKGKKDRISLLSENLLKLLRQYY------KEFHPKKYLFEGLDGGKYSPTSVANILKKA 219

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+  + T H LRHSFATHLL  G DLR IQ +LGH    TT+IYT+V+ K   D +
Sbjct: 220 SLKAGIHKNVTPHMLRHSFATHLLEQGTDLRYIQELLGHESSKTTEIYTHVS-KKAIDKI 278

Query: 311 MEIYDQT 317
               D+ 
Sbjct: 279 KNPIDEF 285


>gi|16519918|ref|NP_444038.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
 gi|2497415|sp|P55632|Y4QK_RHISN RecName: Full=Putative integrase/recombinase y4qK
 gi|2182597|gb|AAB92466.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
          Length = 308

 Score =  179 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 74/278 (26%), Positives = 115/278 (41%), Gaps = 31/278 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRS 87
           R  S  T  SY      F              +    L   +IR +       +K+   S
Sbjct: 31  RNFSLNTQLSYLRQVSLFARHFG---------KAPDLLGREDIRTYQVYLANEKKLAPNS 81

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           +  +++ ++ F     +R          +   KK   LP  L+  +    +  VL     
Sbjct: 82  IHIAIAALRFFFSVTLERDWV---PAEVLPLPKKPQKLPIILSPDEVQHFLGCVL----- 133

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
                D ++ AIL   Y  GLRISEA+ L P +I   +  +R+ QGKG K R V L P +
Sbjct: 134 -----DLKHHAILTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEQGKGQKDRYVMLSPKL 188

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            + + +Y+ +         +  LF G R   P+      +   +      L    T H+L
Sbjct: 189 LEILRDYWRM------PRPKEWLFPGDRAGHPITRDAVGQACAKAHDLSRLSKPVTPHSL 242

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           RH+FA HLL  G D+R+IQ +LGH  L+TT  Y  + +
Sbjct: 243 RHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIAT 280


>gi|260062369|ref|YP_003195449.1| tyrosine type site-specific recombinase [Robiginitalea biformata
           HTCC2501]
 gi|88783932|gb|EAR15103.1| tyrosine type site-specific recombinase [Robiginitalea biformata
           HTCC2501]
          Length = 386

 Score =  179 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 77/301 (25%), Positives = 131/301 (43%), Gaps = 34/301 (11%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            +  LL   + +L+     R  S+ T+ SY     QFL FL     EK           T
Sbjct: 86  ANPTLLDTYRQFLR----GRRYSESTIASYGTMAAQFLEFLGEKPPEKA--------DQT 133

Query: 70  EIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           +  AF+      +K+   + ++++S +K    +L    +        + + +K   LP  
Sbjct: 134 DAEAFLQWLVLERKVSVSTHRQAISALKQLEAFLPACHL----EAKGLVSPRKDRKLPGV 189

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L + + + L+              + ++  +  LLYGCGLR+ E ++L    +   +  L
Sbjct: 190 LGKAEVMRLLQQTR----------NLKHRTLTALLYGCGLRVGELINLQLAEVDIPRRQL 239

Query: 189 RIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
            ++ GKG K R V L   +   + +Y               L  G  G+  +    + ++
Sbjct: 240 LVRAGKGRKDRRVVLPERLLPLLGDYLT------AYAPSRYLAEGRPGQQYSATSIRAFL 293

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +   R  G+    T H LRHS+ATHLL  G D+R IQ +LGH R  TT +YT+V+ ++  
Sbjct: 294 KANSRRAGILKKVTPHMLRHSYATHLLEQGVDIRYIQELLGHARPETTMVYTHVSRQDLL 353

Query: 308 D 308
           D
Sbjct: 354 D 354


>gi|116252427|ref|YP_768265.1| integrase/recombinase protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|116255538|ref|YP_771371.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257075|emb|CAK08169.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115260186|emb|CAK03290.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 292

 Score =  179 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 74/278 (26%), Positives = 119/278 (42%), Gaps = 31/278 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRS 87
           R  S  T  +Y      F  + +         ++   L   ++R +       +K+   S
Sbjct: 15  RNFSLNTQLAYLQQVSLFARYFS---------KSPDLLGREDVRIYQVYLANEKKLAPSS 65

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           +  ++S ++   K   +R    E     +   KK   LP  L+  +    +  VL     
Sbjct: 66  IHTAISALRFLYKVTLERDWVPEEV---LPLPKKPQKLPIILSPDEVQHFLGCVL----- 117

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
                D ++ AIL   Y  GLRISEA+ L P +I   +  +R+ QGKG K R V L P +
Sbjct: 118 -----DPKHHAILTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEQGKGQKDRYVMLSPKL 172

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            + + +Y+ +         +  LF G R  +P+          +      L    T H+L
Sbjct: 173 LEILRDYWKMR------RPKAWLFPGDRAGQPITRDAVGEACAKAHNLSRLSKPVTPHSL 226

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           RH+FA HLL  G D+R+IQ +LGH  L+TT  Y  + +
Sbjct: 227 RHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIAT 264


>gi|212640261|ref|YP_002316781.1| Site-specific recombinase XerC [Anoxybacillus flavithermus WK1]
 gi|212561741|gb|ACJ34796.1| Site-specific recombinase XerC [Anoxybacillus flavithermus WK1]
          Length = 307

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 131/313 (41%), Gaps = 23/313 (7%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ++L E + +LQ    E+G S  T+ SY  D  QFL  L     + +T   IR+     I+
Sbjct: 3   KMLHEYETYLQ----EKGFSPNTVISYLNDVNQFLKDLHLRPGDYVTSADIRKW----IQ 54

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK---KSNSLPRAL 129
             ++    + +   ++ R L+ ++SF  +  +     ++ + ++++LK   + N     L
Sbjct: 55  QMLNPSEGKPLAISTINRRLNSLRSFYAWAVEHHKIEQNPMKDIQDLKSADEDNEKIMWL 114

Query: 130 NEKQALTLVDNVLLHTSH----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
            E++   L+  +          + +    R+ A++YLL   GLR+ E  +L   ++  + 
Sbjct: 115 TEEEFEDLLHRMRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEM 174

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPG 241
             +RI GKG K+R VP+   +   + ++             +     +F   R    +  
Sbjct: 175 KRIRIVGKGMKVRTVPISNILLAELEDWLKFRAEMAKKKPHVAASPYVFYSQRSPKFSVR 234

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIYTN 300
             QR I             T H  RH+F   +L     D+  ++ + GH  ++TT  Y  
Sbjct: 235 GIQRMIESYSL---PNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLK 291

Query: 301 VNSKNGGDWMMEI 313
            +  +  D +  +
Sbjct: 292 DSYSDLADAVEAL 304


>gi|186474496|ref|YP_001863467.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198455|gb|ACC76417.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 335

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 120/320 (37%), Gaps = 20/320 (6%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           N+P+  +   +  +Q ++  L  +R +S  T+ SY    R    F   +         + 
Sbjct: 2   NIPDPAARFSVLLQQFFMDYLIGQRNVSPRTVASYRDTFRLLFHFAEQHVGRPPHKLRLT 61

Query: 65  QLSYTEIRAFISKRRTQKIGD-RSLKRSLSGIKSFLKYLKKRKITTESN---ILNMRNLK 120
             +   I  F++     +    RS    L+ ++SF  Y   ++ +       +L +   +
Sbjct: 62  DFNAGLILDFLNHLEVGRHNTIRSRNARLAAVRSFAHYAALQEPSALPVLQGVLAIPMKR 121

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               +   L+ ++        +L   +   W   R+ A+L  LY  G R+SE  S+  ++
Sbjct: 122 FDRPMVGFLSREEM-----QCILAAPNADTWCGKRDQAMLATLYNTGARVSELTSMRVKD 176

Query: 181 IMDDQS-TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           +   +   + + GKG K R +PL     K +  +       +N + Q  LF    G  + 
Sbjct: 177 VTLGRGSCVLLHGKGRKERTLPLWNDTAKLLRRWL----RQINPDPQQWLFPNRSGGQMT 232

Query: 240 PGVFQRYIRQLRRYLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
                  ++                  + H +RH+ A H+L  G DL  I   LGH   +
Sbjct: 233 RAGVTDRLKLAAATASEGYPPLKARHVSPHVVRHATAMHMLQGGVDLSLIALWLGHESPA 292

Query: 294 TTQIYTNVNSKNGGDWMMEI 313
           TT +Y   +       +  I
Sbjct: 293 TTHMYIEADLAMKQRALSAI 312


>gi|169824446|ref|YP_001692057.1| site-specific tyrosine recombinase XerC [Finegoldia magna ATCC
           29328]
 gi|302380744|ref|ZP_07269209.1| site-specific tyrosine recombinase XerC [Finegoldia magna
           ACS-171-V-Col3]
 gi|167831251|dbj|BAG08167.1| integrase [Finegoldia magna ATCC 29328]
 gi|302311687|gb|EFK93703.1| site-specific tyrosine recombinase XerC [Finegoldia magna
           ACS-171-V-Col3]
          Length = 326

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 79/312 (25%), Positives = 138/312 (44%), Gaps = 28/312 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE---------------KITIQTIR 64
           ++L  LE  +G S  T++ Y  D    + ++    +                 + +   +
Sbjct: 10  DFLDYLETIKGRSSNTVKEYAYDINLMIKYIIARKQNIKLKSFDDIVKIDSSDVDLNFFK 69

Query: 65  QLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKS 122
            +   ++ +F+      +  G  +  R  S I++F KY +  RK+   +    + + KK+
Sbjct: 70  NIDVIDLHSFMGFLDHNRSNGSSTRSRKTSSIRTFYKYLINIRKLDIINPAELLDSPKKN 129

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
              P  L   ++L L+  +L     E K   +R+  I  L   CG+R+SE  S+   +I 
Sbjct: 130 IRQPVYLTLDESLDLLKVILREKDEEIK---SRDYCITVLFLNCGMRLSELSSINIDHI- 185

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
              +TLR+ GKG+K R V L      AI  Y  + P   N      LF   +   ++   
Sbjct: 186 -KTNTLRVIGKGNKERTVYLNDMCLDAIDNYLKIRPEIDN----DALFISKKRNRMSNRA 240

Query: 243 FQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTN 300
            Q  I    +  G   S  + H LRH+ AT +   G  D++ +Q ILGH  +STTQIYT+
Sbjct: 241 IQYRIEHYLKIGGFDTSIYSVHKLRHTAATLMYQYGNVDIKVLQEILGHESVSTTQIYTH 300

Query: 301 VNSKNGGDWMME 312
           V++ +  + + +
Sbjct: 301 VDNNSLRNAVNK 312


>gi|156937341|ref|YP_001435137.1| phage integrase family protein [Ignicoccus hospitalis KIN4/I]
 gi|156566325|gb|ABU81730.1| phage integrase family protein [Ignicoccus hospitalis KIN4/I]
          Length = 604

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 72/326 (22%), Positives = 133/326 (40%), Gaps = 51/326 (15%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+   L       L    + +L+ +E+  G +K TL+SY    + FL          +  
Sbjct: 1   MKEPPLKPSPDEPLSSAIEEYLEFMEVS-GANKKTLKSYRSALKDFLSV--------VGD 51

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG-----------IKSFLKYLKKRKITT 109
           + + ++ Y +   ++ KR  +    RS+K+               +++FLK+L    +  
Sbjct: 52  KRVGEVKYEDYVKWVRKRMKEGF-PRSVKKDKRAQQTTLHYYSLFVRNFLKWLGLEGL-- 108

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
               +     K       AL  ++   L+            + D  +  I+ LL   GLR
Sbjct: 109 --PAV----PKPRKDSVEALKPEEVAALLQA---------AYEDPIDFLIVSLLLETGLR 153

Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
            SEAL++T   +   +  + ++GK  K R+V   P   +A+   +              +
Sbjct: 154 ASEALNVTLDKVDFRRRQIAVRGKYGKERVVFYGPLTEEALRRAW------------SYI 201

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILG 288
               R  PL+     + +++L +  GLP      H LRH+FAT  L  G  L ++Q +LG
Sbjct: 202 APSGRLVPLSYQALYKRLKRLAKKAGLPEHKLHPHALRHTFATEALRRGMSLPAVQRLLG 261

Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIY 314
           H  + TTQIY ++   +  +   + +
Sbjct: 262 HSDIKTTQIYLHLLVDDVRNQYFQAF 287


>gi|310658536|ref|YP_003936257.1| site-specific integrase/recombinase [Clostridium sticklandii DSM
           519]
 gi|308825314|emb|CBH21352.1| putative site-specific integrase/recombinase [Clostridium
           sticklandii]
          Length = 334

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 81/299 (27%), Positives = 137/299 (45%), Gaps = 21/299 (7%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR-SL 88
           G S  T+ SY  D + F  + +        I  IR +    I ++ +   + +  +  S+
Sbjct: 36  GKSNNTVVSYYLDIKTFFDYCSISEILSQEITDIRPI---HINSYYTHLVSVRDNNSISI 92

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           KR    +K F  +L+++    ++ I         +K     P  L  ++   +   +L  
Sbjct: 93  KRKKYVMKLFFDFLEEQNEINKNPIPKDSVIKAKIKNPYKAPTYLEIEEIKKINKAIL-- 150

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRI--- 199
            +++ ++   RN  I  LL   GLRI+EAL+L   +     +T  L ++GKG+K R    
Sbjct: 151 DTNKNEFTKIRNLFIFNLLIHTGLRINEALNLDLSDFEQGINTNRLYVKGKGEKERYLPI 210

Query: 200 ---VPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQLRRY 253
                      +  +  +    F L    +     LF   RG  L     Q+ +++LR  
Sbjct: 211 ELNSTFFQIYEEGFVYNFAERYFTLRNKTKTSNCALFISKRGDRLTSRYVQKNLQELRLS 270

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             L  + T H LRH+FATHLL NG ++R +Q +LGH  +STTQIYT+ NSK+  + + +
Sbjct: 271 ANLNKNVTPHKLRHTFATHLLKNGTNIRLVQELLGHSSISTTQIYTHSNSKDLDEAIKK 329


>gi|313676041|ref|YP_004054037.1| integrase family protein [Marivirga tractuosa DSM 4126]
 gi|312942739|gb|ADR21929.1| integrase family protein [Marivirga tractuosa DSM 4126]
          Length = 372

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 70/286 (24%), Positives = 129/286 (45%), Gaps = 30/286 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + Q LE++R  +  T ++Y     +F        +     + +  +  T+I+ ++   
Sbjct: 103 EAYFQKLELKR-YALKTAENYTACFDRF--------KRHFPTRKLMSIDETDIKNYLKGL 153

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +K  D  +  S++ IK + +      +   +   ++    K+  LP  L++++ + ++
Sbjct: 154 AQRKYSDSFVNLSINSIKFYYE--VVEGM--PNRFYDIERPMKTERLPEILSKEEVIAMI 209

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197
                      K  + ++  I+ +LY  GLR  E L+L   +I   + T+R+ QGKG K 
Sbjct: 210 ----------NKTFNIKHQCIISILYSSGLRRGELLNLKLSDIDGKRMTIRVEQGKGKKD 259

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R   L   +         L  +         LF G +G+P +    ++ + +  +   + 
Sbjct: 260 RYSILSEKLL------LKLRLYYKQYKPTHYLFEGKKGQPYSGSSVRQIVAKAAKNANIN 313

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
                H LRHSFATHLL  G DLR IQ +LGH    TT+IYT+V +
Sbjct: 314 KPVRPHMLRHSFATHLLEAGTDLRHIQLLLGHNSTKTTEIYTHVAT 359


>gi|138898385|ref|YP_001127570.1| putative integrase/recombinase Xer [Geobacillus thermodenitrificans
           NG80-2]
 gi|134268631|gb|ABO68825.1| Putative integrase/recombinase Xer [Geobacillus thermodenitrificans
           NG80-2]
          Length = 307

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 131/313 (41%), Gaps = 23/313 (7%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ++L E + +LQ    E+G S  T+ SY  D  QFL  L     + +T   IR+     I+
Sbjct: 3   KMLHEYETYLQ----EKGFSPNTVISYLNDVNQFLKDLHLRPGDYVTSADIRKW----IQ 54

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK---KSNSLPRAL 129
             ++    + +   ++ R L+ ++SF  +  +     ++ + ++++LK   + N     L
Sbjct: 55  QMLNPAEGKPLAISTINRRLNSLRSFYAWAVEHHKIEQNPMKDIQDLKSADEDNEKIMWL 114

Query: 130 NEKQALTLVDNVLLHTSH----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
            E++   L+  +          + +    R+ A++YLL   GLR+ E  +L   ++  + 
Sbjct: 115 TEEEFEDLLHRMRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEM 174

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPG 241
             +RI GKG K+R VP+   +   + ++             +     +F   R    +  
Sbjct: 175 KRIRIVGKGMKVRTVPISNILLAELEDWLKFRAEMAKKKPHVAESPYVFYSQRSPKFSVR 234

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIYTN 300
             QR I             T H  RH+F   +L     D+  ++ + GH  ++TT  Y  
Sbjct: 235 GIQRMIESYSL---PNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLK 291

Query: 301 VNSKNGGDWMMEI 313
            +  +  D +  +
Sbjct: 292 DSYSDLADAVEAL 304


>gi|120602210|ref|YP_966610.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
 gi|120562439|gb|ABM28183.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
          Length = 472

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 73/173 (42%), Positives = 97/173 (56%), Gaps = 5/173 (2%)

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           + I  R+ A+  LLYG GLRISEAL L   +       +R+ GKG K R+ PL  +   A
Sbjct: 254 EAIRRRDLALAELLYGSGLRISEALGLDVLDADPSAGVVRVLGKGSKERMSPLSDTSADA 313

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           + E+       L    +  LF G RG  L+     R I  L R  GLP S + H LRHSF
Sbjct: 314 LREWLHFRHH-LASEGERALFVGARGGRLDRRQATRIIDALCRRAGLPQSVSPHGLRHSF 372

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           ATHLL  G DLRS+Q +LGH RL+TTQ YT++   +    ++E+YD+ HP  +
Sbjct: 373 ATHLLEAGADLRSVQELLGHARLATTQRYTHLTLAH----LIEVYDKAHPRAS 421



 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 60/129 (46%), Gaps = 3/129 (2%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
              + +  + +L ++E+E+G S  T+ +Y  D  QF       T E   +     ++   
Sbjct: 39  DAAVPETLELFLAHVELEKGYSPATVTAYGTDLMQF---HGVLTAEGFGLDAPENVTRRH 95

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           ++ ++++    +    S+ R LS +++F +Y+ + +  T   +  + N ++    PR LN
Sbjct: 96  VQRYLAELHRLRTARSSVARKLSALRAFFRYMLRLRRVTADPVAAVHNPRQEKRQPRTLN 155

Query: 131 EKQALTLVD 139
             Q   L+D
Sbjct: 156 VDQVFALLD 164


>gi|88856877|ref|ZP_01131529.1| phage-related integrase [marine actinobacterium PHSC20C1]
 gi|88813845|gb|EAR23715.1| phage-related integrase [marine actinobacterium PHSC20C1]
          Length = 333

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 72/320 (22%), Positives = 133/320 (41%), Gaps = 22/320 (6%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P+I   +L+++   +L+ L  +RG S  T++SY         ++   T    +   +  L
Sbjct: 4   PQIEFPQLVQDF--FLRRLVDQRGASARTIESYRDAFELLFSYIEKRTGTSPSTLQMADL 61

Query: 67  SYTEIRAFISKRRTQKI-GDRSLKRSLSGIKSFLKYLKKRKITT---ESNILNMRNLKKS 122
               +  F     T++    R+    L+ I SF++Y   R   +    S +L +   +  
Sbjct: 62  DAPLVLDFFDYLETERHNSARTRNVRLAAIHSFMRYAAVRDPASLPITSRVLAIGAKRFD 121

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             +   L+ +Q   ++            W   R++ +L   Y  G R+SE  +L   +I+
Sbjct: 122 RPVLGYLSREQITAIL-----AAPDRNTWSGRRDAVMLATTYNTGARVSEITALRVSDIL 176

Query: 183 DDQST-LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
            D+ + + + GKG K R++PL  +    +  +       +N     P+F    G P++  
Sbjct: 177 ADRQSAVHLHGKGRKQRVIPLWKNTASDLRSWLGR----INTAPDAPVFPNKAGAPMSRS 232

Query: 242 VFQRYIRQLRRYL--GLP----LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             +  + +       G P       + HTLRH+ A HLL +G DL +I   LGH   +TT
Sbjct: 233 GVRDRLDRAVAIAEQGCPSLRGQHISPHTLRHATAMHLLQSGTDLATIALWLGHSSPATT 292

Query: 296 QIYTNVNSKNGGDWMMEIYD 315
           Q Y   +       +  + D
Sbjct: 293 QQYLEADLAAKEAVLEHLPD 312


>gi|150377511|ref|YP_001314106.1| phage integrase family protein [Sinorhizobium medicae WSM419]
 gi|150032058|gb|ABR64173.1| phage integrase family protein [Sinorhizobium medicae WSM419]
          Length = 330

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 80/331 (24%), Positives = 133/331 (40%), Gaps = 29/331 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+  N P ++       ++ +   L  +   S+ T+  Y    R  + +      +  T 
Sbjct: 1   MKATNFPALI-------QRFFTDRLCTQMEASQHTIAGYRDTFRLLIRYAGSRCGKPPTK 53

Query: 61  QTIRQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRK---ITTESNILNM 116
            TI  L    +  F+S   T +    R+    L+ I+SF +Y+       +     IL+M
Sbjct: 54  LTIEDLDADLVADFLSHVETTRGNTARTRNARLAAIRSFFRYVAMTDPTWLLHCQRILSM 113

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
            + +        L+ ++   L+          T W+  R+ A+L L    GLR SE +SL
Sbjct: 114 PSKRYVKRSVTFLDAQEIAALL-----VAPDRTTWVGRRDHALLLLALQTGLRASELISL 168

Query: 177 TPQNIMDDQS-TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
             ++++      +R  GKG K R  PL     K I  +          +   PLF  IRG
Sbjct: 169 RCKDVVLGAGAHIRCVGKGRKERSTPLRRDTAKLIQGWIGER-----RDSDSPLFPSIRG 223

Query: 236 KPLNPGVFQRYIRQLRRYLGLP------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           + L+    +  +R+                 T HTLRHS A  LL +G D   I   LGH
Sbjct: 224 ERLSRDALEHLVRKHCLTASRTCPSLASKRVTPHTLRHSTAMELLHHGVDQSVIALWLGH 283

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYD-QTHP 319
             + TTQIY + + +     + ++   + HP
Sbjct: 284 ESVETTQIYIHADMRLKEKALSQVARPEAHP 314


>gi|226314997|ref|YP_002774893.1| hypothetical protein BBR47_54120 [Brevibacillus brevis NBRC 100599]
 gi|226097947|dbj|BAH46389.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 290

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 81/299 (27%), Positives = 134/299 (44%), Gaps = 19/299 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +    +LQ L    G S+ T+  Y+ D   F  FL      +     I ++  T+I  
Sbjct: 6   LTQAIDIFLQYLSSI-GRSEQTITGYKKDLSYFTRFLERKYNCEP---YIDEVLVTDIED 61

Query: 74  FISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           F+   +T++     S +R+L   +SF  Y +K++  + +  L++  +K        L E 
Sbjct: 62  FLLYLKTERAYAPASRQRNLHTFRSFFAYAQKKEWVSRNIALSVEKIKVQQKERTYLEEA 121

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ- 191
           +   LV          ++        ++ +LY  G+RISE L+L    +  DQ  + +  
Sbjct: 122 EVDELV----------SEIDHPLIRLVVMVLYMTGMRISECLNLKVDEVKWDQQVIHVVA 171

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG+K R +P+ P +   + EY      D + N     F   +   L+P    R I +  
Sbjct: 172 GKGNKDRFIPISPRLLPMLKEYVLHHRPDSDSNR---FFCTKKTGKLSPVYVNREITEAV 228

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           + LG     TAH LRHSFA+ L+    +L  IQ +LGH  L+ T +YT+ N     D +
Sbjct: 229 KRLGWSKKVTAHILRHSFASQLVKKDVNLVQIQKLLGHSSLNVTSVYTHTNLDQLRDAI 287


>gi|116254508|ref|YP_770344.1| putative phage integrase protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115259156|emb|CAK10271.1| putative phage integrase protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 303

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 74/278 (26%), Positives = 119/278 (42%), Gaps = 31/278 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRS 87
           R  S  T  +Y      F  + +         ++   L   ++R +       +K+   S
Sbjct: 26  RNFSLNTQLAYLQQVSLFARYFS---------KSPDLLGREDVRIYQVYLANEKKLAPSS 76

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           +  ++S ++   K   +R    E     +   KK   LP  L+  +    +  VL     
Sbjct: 77  IHTAISALRFLYKVTLERDWVPEEV---LPLPKKPQKLPIILSPDEVQHFLGCVL----- 128

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
                D ++ AIL   Y  GLRISEA+ L P +I   +  +R+ QGKG K R V L P +
Sbjct: 129 -----DPKHHAILTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEQGKGQKDRYVMLSPKL 183

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            + + +Y+ +         +  LF G R  +P+          +      L    T H+L
Sbjct: 184 LEILRDYWKMR------RPKAWLFPGDRAGQPITRDAVGEACAKAHNLSRLSKPVTPHSL 237

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           RH+FA HLL  G D+R+IQ +LGH  L+TT  Y  + +
Sbjct: 238 RHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIAT 275


>gi|332983016|ref|YP_004464457.1| integrase family protein [Mahella australiensis 50-1 BON]
 gi|332700694|gb|AEE97635.1| integrase family protein [Mahella australiensis 50-1 BON]
          Length = 290

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 81/308 (26%), Positives = 145/308 (47%), Gaps = 27/308 (8%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           F+ L E +N L  L  E+  S  T+++Y  D  +F+ +L      + +   I  +   E 
Sbjct: 2   FDHLDEFKNEL--LRQEK--SLHTVRAYVSDVTEFIKWLTDMLGTEYSPDKITSVDIQEF 57

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           R+++   R  K    S+ R L+ ++ +   L+   I   +  + ++ ++          +
Sbjct: 58  RSYLHNIRQNK--PTSVNRKLTALEQYCSVLESMGIIKNNPAIGVKKMRYQK-------Q 108

Query: 132 KQALTLVDNVLLHTSHETKWIDAR--NSAILYLLYGCGLRISEALSLTPQNIM--DDQST 187
            Q   L DN  L+      +++A   + AI  L+   GLR +E  +L   +++  D + T
Sbjct: 109 SQVEAL-DNKDLYKLKRMFYMEANKRDIAIFELMINTGLREAEVCNLQLSDVIVSDRKGT 167

Query: 188 LRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           + ++ GKG+K R VPL    RKAI  Y ++ P   N      LF   +   L+     R 
Sbjct: 168 VIVRSGKGEKYREVPLNIDARKAITAYLEVRPDRGN-----YLFVSNKSDRLSESQLYRI 222

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           IR+        ++   H LRH+FAT LL +G  DL +++ +LGH  ++TT IYT  N ++
Sbjct: 223 IRKYADMA--DVNVYPHKLRHTFATKLLRDGGVDLVTVKELLGHTSINTTAIYTKANKQD 280

Query: 306 GGDWMMEI 313
               + ++
Sbjct: 281 MEKAVEKL 288


>gi|241992604|gb|ACS73657.1| IntI [uncultured bacterium]
          Length = 314

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 73/340 (21%), Positives = 138/340 (40%), Gaps = 65/340 (19%)

Query: 1   MEGNNLPEI-VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
           M   + P I +  +LL + ++ L+     +  S  T Q+Y    ++F++F      +++ 
Sbjct: 1   MPTQDTPMINLPPKLLDQVRDQLR----VKHYSIRTEQAYVDWIKRFILFHGKRHPQEMG 56

Query: 60  IQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
                     E+  F++    +  +   +  ++LS +    + + K  +    N++    
Sbjct: 57  --------APELEVFLTDLAVRGGVSASTQNQALSAVLFLYREVLKIDLPWLDNVIRA-- 106

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            K+   LP  L   +   +++ +           D   + +  LLYG G+R+ E + L  
Sbjct: 107 -KRPQRLPVVLTPVEVRAVLERM-----------DGVYALMGRLLYGTGMRLMECVRLRV 154

Query: 179 QNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAIL-------------------------- 211
           +++   ++ + I+ GKG K R+  L  +V   +                           
Sbjct: 155 KDVDFGRNEILIRDGKGGKDRVTMLPSTVAATLADHLQRRRVIFEDDLAAGKAEVWLPDA 214

Query: 212 ----------EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
                     E+     F        P    +R   ++  + QR +++      L    T
Sbjct: 215 LAKKYPGAGTEWAWQYVFCSGSYSTDPRSGRVRRHHIDEKLLQRAMKKAVTAARLTKPAT 274

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            HTLRHSFATHLL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 275 PHTLRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYTHV 314


>gi|188997103|ref|YP_001931354.1| integrase family protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932170|gb|ACD66800.1| integrase family protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 297

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 74/313 (23%), Positives = 128/313 (40%), Gaps = 51/313 (16%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  +      S  T+++Y  D  QF+          +  + I +++  +I  F    + 
Sbjct: 10  FLSYMAD---KSPNTVKNYRVDFNQFIKI--------VGDKNINEITKADIAKFRMTLQM 58

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     ++ R L+ I S  +YL   ++ + S I      K S  +P AL+ ++   L+D 
Sbjct: 59  QNRKSSTIARKLASINSLFQYLMDLELVSSSPITKSHRPKVSQKIPSALSNEEVKKLIDA 118

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-------------- 186
           +             ++ AI+ L    GLR SE LS+   NI+ +++              
Sbjct: 119 LD----------SIQDKAIVVLFLTTGLRSSELLSIKKSNIIVERNGQTFSIDRLIEGEV 168

Query: 187 ------TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                  +R+ GKGDK R VP+     + +++Y       L+              P++ 
Sbjct: 169 KEGDIAYIRVVGKGDKEREVPITGKPLEILVQYLKSINEFLDD--------NEYIFPISY 220

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            +  R I+ + + L +      H LRH+ AT  LS+G +LR IQ +LGH    TT  Y  
Sbjct: 221 HLLWRKIKNIGKKLAIT--LHPHKLRHTAATMALSSGAELRVIQELLGHASPVTTARYAK 278

Query: 301 VNSKNGGDWMMEI 313
           V  K        +
Sbjct: 279 VGQKQLLKATKAL 291


>gi|148243783|ref|YP_001220023.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|325113224|ref|YP_004277170.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|325113258|ref|YP_004277204.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|326402547|ref|YP_004282628.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|146400346|gb|ABQ28881.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|325049408|dbj|BAJ79746.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|325052691|dbj|BAJ83028.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|325052725|dbj|BAJ83062.1| phage integrase family protein [Acidiphilium multivorum AIU301]
          Length = 330

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 76/328 (23%), Positives = 127/328 (38%), Gaps = 22/328 (6%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M    LP ++       ++ +   L  +   S+ T+  Y    R  L + +   ++    
Sbjct: 1   MNAVTLPALI-------QRFFTDRLCTQLEASRHTVAGYRDTFRLLLRYASARRKKPPVN 53

Query: 61  QTIRQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
            T+  +    +  F++   T +    RS    L+ I+SF +++     T   +   +  +
Sbjct: 54  LTVEDIDADLVADFLAHTETARGNSARSRNTRLAAIRSFFRFVAMTDPTWLLHCQRILAM 113

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
                + RA+            LL     T W   R+ A+L L    GLR SE + LT  
Sbjct: 114 PNKRYVKRAVT--FLDAEEMAALLAAPDRTTWAGRRDHALLLLAVQTGLRASELVGLTRG 171

Query: 180 NIMDDQS-TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           +++      +R  GKG K R  PL     K +  +        + +   PLF  IRG+ L
Sbjct: 172 DVVLGTGAHIRCMGKGRKERATPLRRETAKLLATWIGN-----DKDEGKPLFPSIRGERL 226

Query: 239 NPGVFQRYIRQLRRYLGL------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +    +  +R+                 T HTLRHS A  LL +G D   I   LGH  +
Sbjct: 227 SRDALEHLVRKHCLTASRACPSIGTKQVTPHTLRHSTAMDLLHHGVDPAVIALWLGHENV 286

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHPS 320
            TTQIY + + +     +  +     PS
Sbjct: 287 ETTQIYIHADMRMKEKALARVAAPATPS 314


>gi|329117924|ref|ZP_08246638.1| site-specific recombinase XerC [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327466005|gb|EGF12276.1| site-specific recombinase XerC [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 314

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 82/315 (26%), Positives = 144/315 (45%), Gaps = 10/315 (3%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S +L +    +L +    R  S+ T++ Y  + RQF+  L  Y  +          +  
Sbjct: 6   ISKQLHQHINGFLDHCRS-RCFSEGTIEGYRSNLRQFVSRLGDYAAKHKVADFQTACTEI 64

Query: 70  EIRAFISKRRTQK--IGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKKSNSLP 126
            +   I+ ++     +   +++R +   +SF+ YL K  +   S         K   +LP
Sbjct: 65  VMMETITMKQADNPELKATTIRRYICAWRSFIAYLVKANVLDLSYDRFRFDLPKLPETLP 124

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           ++++      L+DN       +  W+  RN  I  L+   GLRISE  +L   ++   + 
Sbjct: 125 KSVDMSVLDKLLDNPQC-LPKQPHWMYLRNLCIFELMTYSGLRISEVSNLLMTDVYFAER 183

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ-R 245
            +R+ GKG + R+VP+  +V K I  Y               LF G  GK L P   +  
Sbjct: 184 QIRVIGKGQRTRLVPITDTVAKRIRAYLKERSASAVNIRTNHLFVGRGGKMLRPCSIRLS 243

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             + +   LG  +  T H+LRHS ATH +    +LR +Q +LGH  ++TTQIYT++++  
Sbjct: 244 LHKMVAARLGEEMHITPHSLRHSCATHFVRETHNLRFVQILLGHKSIATTQIYTHLDN-- 301

Query: 306 GGDWMMEIYDQTHPS 320
              ++ E++ Q H  
Sbjct: 302 --GFVQEMFHQHHSR 314


>gi|260662141|ref|ZP_05863037.1| integrase [Lactobacillus fermentum 28-3-CHN]
 gi|260553524|gb|EEX26416.1| integrase [Lactobacillus fermentum 28-3-CHN]
          Length = 292

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 61/285 (21%), Positives = 116/285 (40%), Gaps = 17/285 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   Q WL     ++G +KLT+ SY  D R    +L         +   +Q+    + A+
Sbjct: 12  LVSYQEWL----TKKGGAKLTIASYLTDLRDTAAYLTSR-----GVTNWQQVDRATLTAY 62

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +     +     +++R +S ++ F  YL+         +  ++  +     P  L  ++A
Sbjct: 63  LQSLNDKGRRTTTIQRRISSLRRFYVYLQVTGQVNHDPVALLKAKQTPRLAPVGLTPQEA 122

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L D+V        +     N A++ LL   G R +E   L   ++  +   + +    
Sbjct: 123 DLLPDHVPGKGVARER-----NRALVALLVATGARANELRDLQTGDLDLELGVVYL--GQ 175

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
              R+VPL    +  +  Y      D +   +  +F   RG+PL+       +    +  
Sbjct: 176 SSRRLVPLNEQAQTYLTTYLTAR-ADQSATDEGYVFLNNRGQPLSRQSIWEIVNATGQRA 234

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            +  + T   +R  FA  LL++G DL  +Q ++GH  + TTQ+Y 
Sbjct: 235 NIEGAVTPQRVRDGFAYRLLAHGADLSLVQQLMGHQSILTTQVYL 279


>gi|163795288|ref|ZP_02189255.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|163795386|ref|ZP_02189353.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|163796178|ref|ZP_02190140.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|159178637|gb|EDP63177.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|159179274|gb|EDP63805.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|159179372|gb|EDP63903.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
          Length = 276

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 77/277 (27%), Positives = 120/277 (43%), Gaps = 31/277 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R LS  T +SY     +F  +           ++  +L   ++RAF     +  I   +L
Sbjct: 8   RNLSPATQRSYVLAVSKFSRYFD---------RSPDRLGLEDVRAFQVHLVSTGISWAAL 58

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            +++  ++ F           E     +   ++  +LP  L+  + +  ++ V    S  
Sbjct: 59  NQTVCALRFFYGVTLGHGEIPE----RIPYAREPRNLPVVLSADEVVRFLEAVASLKS-- 112

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR 207
                    A L   Y  GLR+SE ++L   ++   +  +R+  GKG K R V L   + 
Sbjct: 113 --------RAALTTAYAAGLRVSEVVALRVGDVDSGRMVIRVEHGKGGKDRYVMLSAQLL 164

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
             +  Y+ L         +  LF G    KP++  V     R  R   GL    T HTLR
Sbjct: 165 GILRTYWRLA------RPEHWLFPGREASKPIDVQVLHAACRSARAAAGLDKRVTVHTLR 218

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           HSFATHLL +G D+R IQ +LGH  LSTT  YT V++
Sbjct: 219 HSFATHLLESGTDIRIIQVLLGHANLSTTARYTQVSN 255


>gi|295089983|emb|CBK76090.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 342

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 78/345 (22%), Positives = 138/345 (40%), Gaps = 31/345 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M  N LPE   F LL E Q + + +    GLS  T++SY+   R    ++    ++    
Sbjct: 1   MRKNKLPE---FTLLLE-QFFTEYMPFSSGLSPNTIRSYKHSFRLLFQYIYQVQKKNADE 56

Query: 61  QTIRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTE---SNILNM 116
              R L Y  I  F+    T+      +    LS + SF  Y + R        +N +  
Sbjct: 57  ILFRDLDYETIDGFLKWIETERGCSASTRNLRLSALASFSFYAQNRNFEAATVFANAVRR 116

Query: 117 RNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
             +KK    PR   +  +      +VLLH  +  K +  R+  +L L+Y  G R  E   
Sbjct: 117 TPVKKEAIQPRITFSLDEV-----SVLLHLPNPQKRLGFRDQVLLNLMYASGARAQEICD 171

Query: 176 LTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
           L  ++   +++   L I GKG+K R + +       +  Y +         ++  +F   
Sbjct: 172 LKVRDFFVEKNLYKLTITGKGNKTRRIVIAKPSGILLKRYLEETGR--AGQLETYIFSSQ 229

Query: 234 RGKPLNPGVFQRYIRQL--RRYLG-----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
               +     +   ++       G     L    T HT+RH+ ATH+L  G  + +I++ 
Sbjct: 230 THPQMTISCVEEIYKKYIALARAGHPGMFLEKRYTPHTMRHTTATHMLEAGVPIVAIKNF 289

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMME------IYDQTHPSITQKD 325
           LGH  +STT+ Y  ++       + +       + +  P   +K+
Sbjct: 290 LGHSSISTTERYAELSQGTVNRHIRDWNEKWFSHQKEEPVERKKE 334


>gi|116619765|ref|YP_821921.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222927|gb|ABJ81636.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 332

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 70/305 (22%), Positives = 114/305 (37%), Gaps = 24/305 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-R 79
           +   L  +R  S  T+ SY    R  L F      +  +   +  L  + + AF+     
Sbjct: 15  FTTRLMAQRKASPHTIASYRDTFRLLLQFAQMRLRKAPSQLGLEDLDASLVGAFLEDLGN 74

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKR-----KITTESNILNMRNLKKSNSLPRALNEKQA 134
            +  G RS    L+ I+SF +Y          I     +L + N ++  +L   L   + 
Sbjct: 75  RRHNGARSRNLRLTAIRSFFRYASLEAPAHSGIIQR--VLAIPNQRQRRTLVGFLTRPEI 132

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLRIQGK 193
             L+        + T+W+  R+ A L      GLR+SE   L  +++       +R +GK
Sbjct: 133 DALL-----AAPNRTQWLGRRDHAFLLTAVQTGLRLSEMTGLRHEDVSLGAGAHVRCRGK 187

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R  PL       +  +      +        LF   RG PL+    Q  + +    
Sbjct: 188 GRKERCTPLAKPTAAVLKAWI----REQGRGDSKTLFPSTRGGPLSADGVQHLLARHVAK 243

Query: 254 LGL------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                        + H LRH+ A  LL  G D   I   LGH  + TTQIY + +     
Sbjct: 244 ARKHCASLRKKRVSPHVLRHAAAMELLQAGVDRAVIALWLGHESVETTQIYLDADLALKE 303

Query: 308 DWMME 312
           + + +
Sbjct: 304 EALAK 308


>gi|255690724|ref|ZP_05414399.1| glutamine amidotransferase, class I [Bacteroides finegoldii DSM
           17565]
 gi|260623761|gb|EEX46632.1| glutamine amidotransferase, class I [Bacteroides finegoldii DSM
           17565]
          Length = 343

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 65/321 (20%), Positives = 136/321 (42%), Gaps = 22/321 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-T 80
           ++ L + R LS+ T  SY    R  + +++      I    I  ++   I  F+      
Sbjct: 21  IEYLIVTRNLSRNTQMSYRDTFRMLVSYVSTLISIAIDNLKISDITTDVITKFLDYLEIE 80

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKK---RKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +K+   S    L+ IK+F K+L       I    ++  + + K    +   +++ +   L
Sbjct: 81  RKVSVSSRNNRLAAIKAFAKFLAWKSPEHIDWCHHVTLIPSKKTEKRMITYMDKSEIEAL 140

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----DQSTLRIQGK 193
            D  L    ++   I +R+  I+  +Y  G R+SE + +  +++          + + GK
Sbjct: 141 ADAPLKTCKYQG--IRSRDHVIILFMYNTGARVSEVIGVKVKDVAMPSKRGMPMVTLHGK 198

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K RI PL       + ++ D      N      LF     +P++       I++  + 
Sbjct: 199 GRKERICPLWEDFWDLLKQFID------NKLPDDYLFLNRYNQPMSRFCIYEMIKKYSQD 252

Query: 254 LGLP------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           + L          + H +RH+ ATHLL++G D+  +++ +GH  + TT IY  ++ +   
Sbjct: 253 VILNHPSLANKRPSPHVIRHTTATHLLNSGADIDMVRNWMGHSSIDTTNIYAEISMERKL 312

Query: 308 DWMMEIYDQTHPSITQKDKKN 328
           + + +       + ++K  ++
Sbjct: 313 EVLKKCEQSVSDTPSRKWSED 333


>gi|312794237|ref|YP_004027160.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312181377|gb|ADQ41547.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 290

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 75/306 (24%), Positives = 140/306 (45%), Gaps = 23/306 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL+E + WL+ ++     ++ T+ +Y  D   FL +    T E+       +   T+ ++
Sbjct: 3   LLEEFEQWLRAIDH----TQKTVINYVKDIELFLKWYEQTTGEEFRPSAYNEFVLTQYKS 58

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNE 131
           ++     QK+   S+ R +  ++ F  +L  +     +   N++ +K  + N  P AL++
Sbjct: 59  YM--LTVQKLKPSSVNRKIQALRKFGCFLVAKGYLQTNPAENLKQVKDVRDNLAPAALSK 116

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLR 189
           +    L   V ++          R+ AI+ L    GLR+SE  +L  ++I   + +  LR
Sbjct: 117 QDVFRLRKTVYMYGK-------IRDIAIIELFLNTGLRLSELANLKIEDIEIGERKGKLR 169

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG K R +PL   +RK + +Y +             LF    GKPL P    R +++
Sbjct: 170 VLGKGRKYREIPLNSEIRKILSQYLEKRKHI----DCDFLFTTSTGKPLQPNSIYRLVKR 225

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+      H LRH+FA  L+  G ++  ++ +LGH +L TT  Y   + +     
Sbjct: 226 YAERAGIE--LHPHMLRHTFAQTLIDKGTNVFDVKYLLGHEKLETTMRYKQPSREVQEKA 283

Query: 310 MMEIYD 315
           +  +Y+
Sbjct: 284 LENLYN 289


>gi|299783186|gb|ADJ41184.1| Integrase XerD [Lactobacillus fermentum CECT 5716]
          Length = 292

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 60/285 (21%), Positives = 115/285 (40%), Gaps = 17/285 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   Q WL     ++G +KLT+ SY  D R    +L         +   +Q+    +  +
Sbjct: 12  LVSYQEWL----TKKGGAKLTIASYLTDLRDTAAYLTSR-----GVTNWQQVDRATLTXY 62

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +     +     +++R +S ++ F  YL+         +  ++  +     P  L  ++A
Sbjct: 63  LQSLNDKGRRTTTIQRRISSLRRFYXYLQVTGQVNHDPVALLKAKQTPRLAPVGLTPQEA 122

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L D+V        +     N A++ LL   G R +E   L   ++  +   + +    
Sbjct: 123 DLLPDHVPGKGVARER-----NRALVALLVATGARANELRDLQTGDLDLELGVVYL--GQ 175

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
              R+VPL    +  +  Y      D +   +  +F   RG+PL+       +    +  
Sbjct: 176 SSRRLVPLNEQAQTYLTTYLTAR-ADQSATDEGYVFLNNRGQPLSRQSIWEIVNATGQRA 234

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            +  + T   +R  FA  LL++G DL  +Q ++GH  + TTQ+Y 
Sbjct: 235 NIEGAVTPQRVRDGFAYRLLAHGADLSLVQQLMGHQSILTTQVYL 279


>gi|186473704|ref|YP_001861046.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184196036|gb|ACC74000.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 336

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 70/307 (22%), Positives = 117/307 (38%), Gaps = 20/307 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +++ L  ++  S  T++SY    R  L +      +     T+ +L  T I AF+  
Sbjct: 16  QRFFIERLMQQQNASARTVESYRDTFRMLLTYAQRVLHKPPEKFTLDELDVTLITAFLDH 75

Query: 78  RRT-QKIGDRSLKRSLSGIKSFLKYLKKR---KITTESNILNMRNLKKSNSLPRALNEKQ 133
             T +    RS    LS I++F  Y+  R    +     IL++   +    L   L+ ++
Sbjct: 76  LETARSNSIRSRNARLSAIRTFYHYVTMRCPQALHLAQQILSIPTKRFERPLLGFLSREE 135

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLRIQG 192
              L+            W   R+  +L LLY  G R+SE   +   ++    +  +R+ G
Sbjct: 136 VHALL-----GAPDPDTWFGQRDRLLLMLLYNTGARVSELTGMRVADVTLAATPWVRLHG 190

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R VPL      AI  +      D  L  +  L     G P+              
Sbjct: 191 KGRKQRAVPLWRETAAAIRTWI----RDQGLQPEQSLLPSRHGGPMTRANVAERFSLALM 246

Query: 253 YLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
                    L    T H++RH+ ATHLL  G  +  +   LGH    TT  Y   +    
Sbjct: 247 AAAKTCPSLLKRHITPHSMRHTVATHLLQAGVGITEVALWLGHESPLTTHGYVEADQAMK 306

Query: 307 GDWMMEI 313
              + ++
Sbjct: 307 RRVLAKV 313


>gi|326388779|ref|ZP_08210366.1| integrase/recombinase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206737|gb|EGD57567.1| integrase/recombinase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 324

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 77/319 (24%), Positives = 126/319 (39%), Gaps = 20/319 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RR 79
           + + L  +R  S  T++SY    R  L F+A      +    +  +S  E+RAF+     
Sbjct: 5   FQEWLVEQRSASVHTIRSYRDTWRLLLRFIAERKGGGVARVALADISADEVRAFLHHTEH 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRK---ITTESNILNMRNLKKSNSLPRALNEKQALT 136
            +     +    L+ I+SF  ++  R    +   + +L +   ++  S P  L   +   
Sbjct: 65  GRGSTIGTRNCRLAAIRSFFSFVADRNPEYVAQCAEVLTVPLKREPTSAPCYLEPAEVEA 124

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-RIQGKGD 195
           +     L     +     R+ A+L  LY  G RI EAL L P  I  D     R+ GKG 
Sbjct: 125 I-----LAQPDRSTVAGMRDHALLSFLYNSGARIQEALDLCPDAIRFDAPHCARLNGKGR 179

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RI PL P     I +  +  P   +      +F    GKPL     +  +        
Sbjct: 180 KERICPLWPETVTLIEKLLERQPRAPDER----IFVNRYGKPLGASGVRFKLAAYVDEAA 235

Query: 256 L------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                      T H+ RH+ A HL++ G D+  I+S LGH  L TT  Y   N +     
Sbjct: 236 KAVPSLRSKHVTPHSFRHATAVHLVAAGVDITVIRSWLGHVSLDTTNHYAQANLETKRKA 295

Query: 310 MMEIYDQTHPSITQKDKKN 328
           + ++      ++    K++
Sbjct: 296 LEQVGAPAASNVPPSWKRD 314


>gi|291522920|emb|CBK81213.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 280

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 66/278 (23%), Positives = 118/278 (42%), Gaps = 30/278 (10%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R L   T+ +Y      FL           T + I  L+  ++  F+++++   I   + 
Sbjct: 16  RNLKDSTIHAYCTSVAHFLNH---------TAKDIDALTTDDVDTFLTEKKLSGISPETY 66

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
               SGI+ F K + K     +     +  +K+   LP  L + +   ++D         
Sbjct: 67  NHYHSGIRFFYKKVLKMNWDDDD----IPRMKRDRKLPAVLTKAEISAILDAT------- 115

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVR 207
               + ++ A++  +Y  GLR+SE   L   +I     T+ I+ GK    R   L     
Sbjct: 116 ---PNLKHKAMIATMYSGGLRVSEVTHLHYDDISRTNKTIHIRDGKSRSDRYTLLADRTL 172

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           + + EY+  C        +  LF        L      ++ R+     G+    + H LR
Sbjct: 173 EILTEYWFQC-----GRPRGILFPSSWTGDYLTKDSVIQFFRESAERAGIQKHVSTHCLR 227

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           HSFA+HL  +G D++ IQ++LGH    +T+IY +V++K
Sbjct: 228 HSFASHLFESGCDIKYIQALLGHRDPKSTEIYLHVSNK 265


>gi|317051479|ref|YP_004112595.1| integrase family protein [Desulfurispirillum indicum S5]
 gi|316946563|gb|ADU66039.1| integrase family protein [Desulfurispirillum indicum S5]
          Length = 303

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 139/298 (46%), Gaps = 16/298 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +  +N+   + +E+G S  T+  Y  +  +    L      +  I   +++++ E+RA
Sbjct: 4   MQRIIKNFCSYMRMEKGCSPGTISKYSQELGRLAEHLY-----EQGIHDWQEVTHLELRA 58

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS--NSLPRALNE 131
           ++  +R   +   +    L+ +KSF ++  + +IT  +    +   ++S  + LP+ +N 
Sbjct: 59  YL-YQRAGNLSKHTFSTVLATLKSFFRFTVREEITHANPTTKLSFPRRSPQDKLPQYVNS 117

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           +     +  +L   S +  + + RN +I++     G+R SE  SL   N+     T  I 
Sbjct: 118 EAQSEFLQQLL---SLKRNFTNDRNRSIIFTFLMTGMRTSELCSLKRSNVSAGTQTFIIT 174

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            KG K +++P+   + K +  Y+      +        F   +G+P+ P      + +  
Sbjct: 175 RKGGKQQVLPMATELVKILDTYWTPWYDAI---PSEYYFCTKQGQPMTPRTIWHLVSRQL 231

Query: 252 RYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           + +         AH LRH+FAT+L+    +L  IQ++LGH  +  TQIYT+V+ ++  
Sbjct: 232 QRVDTLSCTKQGAHVLRHTFATNLVRRKANLIEIQNLLGHADVRMTQIYTHVSPESLR 289


>gi|159046238|ref|YP_001541910.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|159046544|ref|YP_001542214.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|157913997|gb|ABV95429.1| phage integrase [Dinoroseobacter shibae DFL 12]
 gi|157914303|gb|ABV95733.1| phage integrase [Dinoroseobacter shibae DFL 12]
          Length = 334

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 77/314 (24%), Positives = 127/314 (40%), Gaps = 21/314 (6%)

Query: 14  LLKERQNWLQ-NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           L  +   +LQ +L  E G S+ T+ +Y C     L F+    +   +   I  L    IR
Sbjct: 4   LAPDLSAFLQTHLPHECGASRHTIAAYACAFTLLLRFVTGRVKRTPSELFIEDLDIQTIR 63

Query: 73  AFISKRRTQKI-GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN---SLPRA 128
           AF+      +    RS    L+ IKSF ++++ R+       + +R +        L   
Sbjct: 64  AFLEHIEEGRANSVRSRNARLAAIKSFFRFVEHRQPACLEQAMMIRAMPTKRTDAKLIDY 123

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQST 187
           L +++   L+        +       R+ A+L+L Y  GLR SE L++   +      S 
Sbjct: 124 LTKEEVRALL-----AAPNRHTPGGLRDRAMLHLTYAAGLRASELLAVRMDDFPDGSFSN 178

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           +RI GKG + R++PL    + AI  +  + P  +       LF    G+ +    F   +
Sbjct: 179 VRILGKGRRERVLPLWKETQCAIRAWLAVRPGRVGPE----LFLNRDGRRMTRDGFAYRL 234

Query: 248 RQLRRYLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           RQ                 T H LRHS A H L   GD+R +   LGH  + TT++Y   
Sbjct: 235 RQHVATAERSTPSIAAKQVTPHVLRHSCAMHTLQATGDIRKVALWLGHASIQTTEMYLRA 294

Query: 302 NSKNGGDWMMEIYD 315
           +       +   + 
Sbjct: 295 DPTEKLALLEAHHA 308


>gi|237717516|ref|ZP_04547997.1| phage integrase [Bacteroides sp. 2_2_4]
 gi|229453185|gb|EEO58976.1| phage integrase [Bacteroides sp. 2_2_4]
          Length = 343

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 65/321 (20%), Positives = 135/321 (42%), Gaps = 22/321 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-T 80
           ++ L + R LS+ T  SY    R  + +++      I    I  ++   I  F+      
Sbjct: 21  IEYLIVTRNLSRNTQMSYRDTFRMLVSYVSTLISIAIDNLKISDITTDVITKFLDYLEIE 80

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKK---RKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +K+   S    L+ IK+F K+L       I    ++  + + K    +   +++ +   L
Sbjct: 81  RKVSVSSRNNRLAAIKAFAKFLAWKSPEHIDWCHHVSLIPSKKTEKRMITYMDKSEIEAL 140

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----DQSTLRIQGK 193
            D  L    ++   I +R+  I+  +Y  G R+SE + +  +++          + + GK
Sbjct: 141 ADAPLKTCKYQG--IRSRDHVIILFMYNTGARVSEVIGVKVKDVAMPPKRGMPMVTLHGK 198

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K RI PL       +  + D      N      LF     +P++       I++  + 
Sbjct: 199 GRKERICPLWEDFWDLLKPFID------NKLPNDYLFLNRYNQPMSRFCIYEMIKKYSQD 252

Query: 254 LGLP------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           + L          + H +RH+ ATHLL++G D+  +++ +GH  + TT IY  ++ +   
Sbjct: 253 VILNHPSLANKRPSPHVIRHTTATHLLNSGADIDMVRNWMGHSSIDTTNIYAEISMERKL 312

Query: 308 DWMMEIYDQTHPSITQKDKKN 328
           + + +       + ++K  ++
Sbjct: 313 EALKKCEQSVSDTPSRKWSED 333


>gi|91774765|ref|YP_544521.1| integron integrase [Methylobacillus flagellatus KT]
 gi|91708752|gb|ABE48680.1| Integron integrase [Methylobacillus flagellatus KT]
          Length = 334

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 70/323 (21%), Positives = 131/323 (40%), Gaps = 61/323 (18%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQ 81
             L + +  S  T Q+Y    +++++F              R +   +I AF++     +
Sbjct: 24  DKLRL-KHYSLRTEQAYVDWIKRYILFHGKRHP--------RDMGAADIEAFLTHLAVKR 74

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +   +  ++ S +    + + + ++    N+      K    LP  L+  +  +++   
Sbjct: 75  NVAASTQNQAKSALLYLYREVLEVELPWLDNVTQANVPK---RLPVVLSVSEVQSVL--- 128

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV 200
                     +   ++ +  LLYG GLR+ EA+ L  +++  ++  + ++ GKG K R+ 
Sbjct: 129 --------AGLSGTHALVAALLYGGGLRLMEAVRLRVKDVDIERREIVVREGKGFKDRVT 180

Query: 201 PLLPSVRKAI------------------------------------LEYYDLCPFDLNLN 224
            L  SV  A+                                     ++     F     
Sbjct: 181 MLPESVVSALKGHLVKVKMLHEEDVAAGFGEVYLPFALDKKYPNAGRDWGWQYVFPSRQL 240

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
              P     R   ++    QR ++Q     G+    T HTLRHSFATHLL +G D+R++Q
Sbjct: 241 SVDPRSGKTRRHHMDEKGVQRAMKQAVFAAGIAKPATPHTLRHSFATHLLQSGYDIRTVQ 300

Query: 285 SILGHFRLSTTQIYTNVNSKNGG 307
            +LGH  +STT IYT+V ++ G 
Sbjct: 301 ELLGHSDVSTTMIYTHVLNRGGK 323


>gi|317121205|ref|YP_004101208.1| integrase family protein [Thermaerobacter marianensis DSM 12885]
 gi|315591185|gb|ADU50481.1| integrase family protein [Thermaerobacter marianensis DSM 12885]
          Length = 318

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 82/317 (25%), Positives = 139/317 (43%), Gaps = 20/317 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA---FYTEEKITIQTIRQLSYTE 70
           L +  + +L+   +ERGL    L+ Y  D   F  +LA       E +T   +       
Sbjct: 4   LPERAEQYLETKRVERGLRTSRLEEYRRDLADFCRWLAGRLRKNPEDLTDADLAGFDRDG 63

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPR 127
            R +++    +++   +  R  S +  + +++    +        +      ++   LP 
Sbjct: 64  ARRWLAHLADRELAPSTRDRRWSTVGGWFRWMVAEGVLPRDPFAGLERPVRGERHKRLPV 123

Query: 128 ALNEKQALTLVDNVL------LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
            L E +A  L+  VL               +  R+ A++  L   GLRISEA+ L   ++
Sbjct: 124 YLAETEAERLLRTVLSDEGLTPRQKAHHARLKERDHALVTTLLYQGLRISEAVGLRYGDV 183

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNP 240
             D+ TLR+ GKGDK R++PL    ++A+L Y    P        Q PL+  + G+PL  
Sbjct: 184 DFDEDTLRVIGKGDKERLLPLHRRTKEALLRYLATWPGPKKPKAPQDPLWWTLTGQPLTK 243

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR----LSTTQ 296
                 +++     GL    +AH LRH+F T L   G DL  I+ +LGH       +TTQ
Sbjct: 244 NA--AAVKRHLVRAGL-WRASAHKLRHTFGTRLAEAGVDLLVIKDLLGHATVATTQATTQ 300

Query: 297 IYTNVNSKNGGDWMMEI 313
           IY +V  +   + + +I
Sbjct: 301 IYAHVAQRRLREAVEKI 317


>gi|323486907|ref|ZP_08092223.1| hypothetical protein HMPREF9474_03974 [Clostridium symbiosum
           WAL-14163]
 gi|323691955|ref|ZP_08106204.1| integrase [Clostridium symbiosum WAL-14673]
 gi|323399770|gb|EGA92152.1| hypothetical protein HMPREF9474_03974 [Clostridium symbiosum
           WAL-14163]
 gi|323503964|gb|EGB19777.1| integrase [Clostridium symbiosum WAL-14673]
          Length = 350

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/326 (19%), Positives = 125/326 (38%), Gaps = 25/326 (7%)

Query: 13  ELLKERQNWLQNL--EIERGLSKLTLQSYECDTRQFLIFL-------AFYTEEKITIQTI 63
           ++LKE   +  +    IE   S  T  +Y  D + F  FL       A       ++  +
Sbjct: 20  QMLKELPPFCADFFRGIEPRTSSRTRIAYAYDLKTFFDFLRQENPLFANCEMRDFSLTVL 79

Query: 64  RQLSYTEIRAFISKRRTQK--------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
            ++   +   ++   +             +R + R ++ +KSF  Y  + +    +    
Sbjct: 80  DEIQVMDFEEYMEFLKCHSTEKREDLVNTERGIMRKIASLKSFYNYFYRHERIKNNPAAL 139

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR------NSAILYLLYGCGLR 169
           ++  K        L   +  +L+D V        K           + A++ LL G G+R
Sbjct: 140 VQLPKLHEKEIIRLEVDEVASLLDQVEAGAQLTEKQKAFHAKTKIRDLALMTLLLGTGIR 199

Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLP 228
           +SE + L   ++  +   +RI  KG K  IV     V  A+ +Y             +  
Sbjct: 200 VSECVGLNINDVDFNTGGIRIHRKGGKEVIVYFGAEVEDALADYMAERKHITPEPGHEDA 259

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LF  ++ K LN    +  +++  + +      T H LR ++ T+L    GD+  +  +LG
Sbjct: 260 LFLSLQKKRLNVRSVENLVKKYAKIVTPLKKITPHKLRSTYGTNLYRETGDIYLVADVLG 319

Query: 289 HFRLSTT-QIYTNVNSKNGGDWMMEI 313
           H  ++TT + Y  +  +       ++
Sbjct: 320 HEDVNTTKKHYAALEDERRRSARNKV 345


>gi|319900063|ref|YP_004159791.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319415094|gb|ADV42205.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 376

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 74/285 (25%), Positives = 132/285 (46%), Gaps = 30/285 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-R 79
           + + L   R  S+ T+++Y    R+F  + A           +R +   EI A+I     
Sbjct: 98  YAETLRQLR-YSEHTVRAYTAYFREFQQYFAGRN--------LRYIRPEEINAYIVHLID 148

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           T+ I        ++ IK + + +  ++         ++  K+  +LP  L++++  +++D
Sbjct: 149 TRGISSCQQNLRINSIKFYFEKVLGQERK----CYEVKRAKRERTLPDVLSKEEIKSILD 204

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR 198
                        D R   +  LLY  GLRISE L L P +I   +S +R++ GKG K R
Sbjct: 205 A---------TGPDIRLFCMFSLLYSAGLRISELLDLKPHDINVSRSLIRVRQGKGRKDR 255

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
              L   + + + EY  L         Q  LF   +G+P    +  + +++  +  G+  
Sbjct: 256 YTLLSKPLVRKLTEYTKLY------KPQEWLFERYKGEPFTESIVSKKLKEAAKEAGITK 309

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
               H LRHSFATHL+  G DL+ ++ +LGH +L TT++Y ++  
Sbjct: 310 RVYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHIAD 354


>gi|303242647|ref|ZP_07329121.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302589786|gb|EFL59560.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 340

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 66/319 (20%), Positives = 131/319 (41%), Gaps = 16/319 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-R 79
           + Q +  ERG S  ++ SY      +L ++    +       +   +   +  +++    
Sbjct: 14  FTQYMPNERGNSPQSIDSYRYAFILYLEYMESVKKISAERIVLSDFTRETVTGYLNWLGA 73

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKR--KITTESN-ILNMRNLKKSNSLPRALNEKQALT 136
           +++    +  + L+ +K F+ YLK        E   IL +   K        +       
Sbjct: 74  SRENSPSTRNQRLAALKGFVHYLKYEFPDYLDEYQRILGIPLKKTQRKEISYMKTDGVNL 133

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGD 195
           LV+ +       T+     +  IL +LY  G+R++E +++  ++I   +  T+RI GKG+
Sbjct: 134 LVEQI-----DVTRTNGLWDYVILLILYTTGIRVTELINVRVKDISLTEPYTIRIHGKGN 188

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R VPL+ +    I  Y +   +      +  LF+     P         +++      
Sbjct: 189 KGRYVPLMRTAVPHIKRYLETMGYANEARYEETLFKNHMKTPFTRQGINYVLKKYGIKAK 248

Query: 256 ------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                 +P   +AH +RH+ A  L+++G DL  I+ +LGH  + TT+IY   ++K     
Sbjct: 249 RINSELIPNDLSAHKMRHTMAMELVTSGVDLMYIRDLLGHSSVVTTEIYARTDAKLKRKA 308

Query: 310 MMEIYDQTHPSITQKDKKN 328
           +     +  P    +   N
Sbjct: 309 IEAASKEIVPPEDAQWDNN 327


>gi|237756308|ref|ZP_04584862.1| integrase/recombinase XerD [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691535|gb|EEP60589.1| integrase/recombinase XerD [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 297

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 75/313 (23%), Positives = 128/313 (40%), Gaps = 51/313 (16%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  +      S  T+++Y  D  QF+          +  + I +++  +I  F    + 
Sbjct: 10  FLSYMAD---KSPNTVKNYRVDFNQFIKI--------VGDKNINEITKADIAKFRMTLQM 58

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     ++ R L+ + S  +YL   ++   S I      K S  +P AL+ ++   L+D 
Sbjct: 59  QNRKSSTIARKLASVNSLFQYLMDLELVNSSPITKSHRPKVSQKIPSALSNEEVKKLIDA 118

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-------------- 186
           +             ++ AI+ L    GLR SE LS+   NI+ +++              
Sbjct: 119 LD----------SIQDKAIVILFLTTGLRSSELLSIKKSNIIVERNGQTFSIDRLIEGEV 168

Query: 187 ------TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                  +R+ GKGDK R VP+     + +++Y          +I   L       P++ 
Sbjct: 169 KEGDIAYIRVVGKGDKEREVPITGKPLEILVQYL--------KSINEFLDVNEYIFPISY 220

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            +  R IR + + L +      H LRH+ AT  LS+G +LR IQ +LGH    TT  Y  
Sbjct: 221 HLLWRKIRNIGKKLAIT--LHPHKLRHTAATMALSSGAELRVIQELLGHASPVTTARYAK 278

Query: 301 VNSKNGGDWMMEI 313
           V  K        +
Sbjct: 279 VGQKQLLKATKAL 291


>gi|313682300|ref|YP_004060038.1| tyrosine recombinase xerd subunit [Sulfuricurvum kujiense DSM
           16994]
 gi|313155160|gb|ADR33838.1| tyrosine recombinase XerD subunit [Sulfuricurvum kujiense DSM
           16994]
          Length = 273

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 78/305 (25%), Positives = 139/305 (45%), Gaps = 33/305 (10%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + KE + +++ + + + LS  T+++Y  D  +          E+   + +  +    +  
Sbjct: 1   MSKELEAFIEYITVIKALSPRTIEAYSRDLGEI---------EQNAQKALVDIDSNTVFQ 51

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            +     +    R+L R LS   SFL +  + +  + S   ++   K   +LP+ +  + 
Sbjct: 52  ILGTLSNK----RTLNRKLSAFNSFLDFCHRNRFDSLSTKFSLS--KVPKNLPKYVTYET 105

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                    L     + WI  R+ A++  LY  G RISEAL     +I  +   +R  GK
Sbjct: 106 IQA-----GLGMIDRSDWIGLRDYALILFLYATGSRISEALIAEEGDIEIEWLRIR-HGK 159

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R VP+     KA+  Y +  P++     +  L+   RG+PL+     +  ++    
Sbjct: 160 GEKERYVPIAHEALKALRAYQEASPYN-----KPYLWLNYRGEPLSRISAFKITQKYL-- 212

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                  + H LRHS+AT L+  G DLR +Q +LGH  L TTQIYT+V  +N  + ++  
Sbjct: 213 -----GVSPHALRHSYATALILGGADLRVVQELLGHASLLTTQIYTHVQKQNLQETVLRH 267

Query: 314 YDQTH 318
           +   H
Sbjct: 268 HPMAH 272


>gi|288553931|ref|YP_003425866.1| site-specific integrase [Bacillus pseudofirmus OF4]
 gi|288545091|gb|ADC48974.1| site-specific integrase [Bacillus pseudofirmus OF4]
          Length = 348

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 66/325 (20%), Positives = 134/325 (41%), Gaps = 32/325 (9%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           ++L    + +  +   E G ++ TL+SY      F  +L     +      IR +    +
Sbjct: 23  YDLDALFEKYYDSKVAE-GRAEGTLKSYRRVYGVFSEYLTNNDVQ----LDIRAIETDTV 77

Query: 72  RAFISKR-----------------RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
           R F++                   +T+ +  RS+   +  +K+F  +L    +   + + 
Sbjct: 78  RGFVAWLLRERIRWDGHKHKPEYVQTKGLSPRSVNDHIKTLKTFFSFLVDEDLADFNPVS 137

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            ++ +++       L   +   L+        +  K+ D R+  I+  L     RI+E  
Sbjct: 138 KVKKVRQIEKEIDVLTVDELKALM-----SVPYHRKYADFRDYVIMTFLLDTMCRINEVC 192

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +L  ++I    +T+ I+ +  K R    +P  +K           ++++     +F    
Sbjct: 193 TLRKRDIDFKDNTVHIRAEITKTRKGRHVPF-QKRTARLLKELIKEVDVFDSEYIFLSNY 251

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G+ L P  F+  ++   +  G+  +   H  RH+ AT  L  GGD+R +Q ILGH  L  
Sbjct: 252 GEQLEPNHFRSRLKGFAKKAGIERNVHPHLFRHTGATMFLEAGGDIRHLQLILGHADLRM 311

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHP 319
           T  YT+V+ K+    + + ++Q  P
Sbjct: 312 TTRYTHVSGKS----IAKQHEQYSP 332


>gi|196250844|ref|ZP_03149530.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|196209682|gb|EDY04455.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 304

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 66/312 (21%), Positives = 130/312 (41%), Gaps = 23/312 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +L E + +LQ    E+G S  T+ SY  D  QFL  L     + +T   IR+     I+ 
Sbjct: 1   MLHEYETYLQ----EKGFSPNTVISYLNDVNQFLKDLHLRPGDYVTSADIRKW----IQQ 52

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK---KSNSLPRALN 130
            ++    + +   ++ R L+ ++SF  +  +     ++ + ++++LK   + N     L 
Sbjct: 53  MLNPAEGKPLAISTINRRLNSLRSFYAWAVEHHKLEQNPMKDIQDLKSADEDNEKIMWLT 112

Query: 131 EKQALTLVDNVLLHTSH----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           E++   L+  +          + +    R+ A++YLL   GLR+ E  +L   ++  +  
Sbjct: 113 EEEFEDLLHRMRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMK 172

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGV 242
            +RI GKG K+R VP+   +   + ++             +     +F   R    +   
Sbjct: 173 RIRIVGKGMKVRTVPISNILLAELEDWLKFRAEMTKKKPHVAQSPYVFYSQRSPKFSVRG 232

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIYTNV 301
            QR I             T H  RH+F   +L     D+  ++ + GH  ++TT  Y   
Sbjct: 233 IQRMIESYSL---PNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKD 289

Query: 302 NSKNGGDWMMEI 313
           +  +  D +  +
Sbjct: 290 SYSDLADAVEAL 301


>gi|256840427|ref|ZP_05545935.1| tyrosine recombinase XerC [Parabacteroides sp. D13]
 gi|256737699|gb|EEU51025.1| tyrosine recombinase XerC [Parabacteroides sp. D13]
          Length = 374

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 73/285 (25%), Positives = 132/285 (46%), Gaps = 30/285 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-R 79
           + + L   R  S+ T+++Y    ++F  + A           +R +   EI A+I     
Sbjct: 96  YAETLRQLR-YSEHTVRAYTAYFKEFQQYFAGRN--------LRYIRPEEINAYIVHLID 146

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           T+ I        ++ IK + + +  ++         ++  K+  +LP  L++++  +++D
Sbjct: 147 TRGISSCQQNLRINSIKFYFEKVLGQERK----CYEVKRAKRERTLPDVLSKEEIKSILD 202

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR 198
                        D R   +  LLY  GLRISE L L P +I   +S +R++ GKG K R
Sbjct: 203 A---------TGPDIRLFCMFSLLYSAGLRISELLDLKPHDINVSRSLIRVRQGKGRKDR 253

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
              L   + + + EY  L         Q  LF   +G+P    +  + +++  +  G+  
Sbjct: 254 YTLLSKPLVRKLTEYTKLY------KPQEWLFERYKGEPFTESIVSKKLKEAAKEAGITK 307

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
               H LRHSFATHL+  G DL+ ++ +LGH +L TT++Y ++  
Sbjct: 308 RVYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHIAD 352


>gi|254459169|ref|ZP_05072591.1| phage integrase [Campylobacterales bacterium GD 1]
 gi|207084062|gb|EDZ61352.1| phage integrase [Campylobacterales bacterium GD 1]
          Length = 277

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 81/308 (26%), Positives = 137/308 (44%), Gaps = 37/308 (12%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L  E + +++ + + R LSK ++++Y+ D       L            +  L    + +
Sbjct: 7   LSNELEAFIEYISVTRALSKKSVEAYKGDLSSIEDELQI---------PLINLESNSVLS 57

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+SK + +    R+L R LS I +F  +  K   + E      +  K    LP+ L+ K+
Sbjct: 58  FLSKYKNK----RTLNRKLSAINAFFDFCYKSHFSAEK--TKYKFAKIPKLLPKFLSYKE 111

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                    L       W+  R+ A++  L+  G RISE L+L  ++I D    +R   K
Sbjct: 112 I-----QNSLLLIDRNSWLGLRDYALIIFLFASGARISECLALRREDIEDGWLHIR-HAK 165

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K RIVP+      AI  Y +             ++   +G  L+     +  ++    
Sbjct: 166 GEKERIVPVAKVALDAISTYLNE-----KPKENEYVWCNYKGDALSRISAYKITQKYL-- 218

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                + + H LRHS+AT L+S G DLR +Q +LGH  L TTQIYT++  ++    + E 
Sbjct: 219 -----NVSPHVLRHSYATSLISGGADLRVVQELLGHASLLTTQIYTHIQKQD----LKET 269

Query: 314 YDQTHPSI 321
            +  HP  
Sbjct: 270 VEVCHPLA 277


>gi|254452498|ref|ZP_05065935.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198266904|gb|EDY91174.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 319

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 71/279 (25%), Positives = 128/279 (45%), Gaps = 27/279 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R L   +  S+    ++F  +L          ++    +  +++ F        +   + 
Sbjct: 39  RNLGPASKSSHLRACKRFAAWLG---------RSPETATPDDVKYFQQYLVESGVSICTR 89

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            ++++G+K   +   +R       +  + +LK+   +P  L++K+    +          
Sbjct: 90  NQTMTGVKFLFRVTLRRH----DLVAEIFHLKEPVKIPLVLSKKEIKRFLAM-------- 137

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR 207
                 +   +L L YGCGLR  E + L   +I  DQ  +RI Q KG K R V L   + 
Sbjct: 138 --APSLKARVMLSLAYGCGLRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRNVMLPVDIL 195

Query: 208 KAILEYYDLCPFDLNLNI---QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             + +++   P   + ++   +  LF G  GK L+     R  ++  +  G+    T HT
Sbjct: 196 SLLRDWWKERPTSQDRDVPVSERVLFPGYCGKYLSARQISRLFKETAQEAGITKPVTLHT 255

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           LRHSFATHLL +G D+R IQ++LGH +L+TT +Y +V +
Sbjct: 256 LRHSFATHLLESGVDIRVIQALLGHAKLTTTALYASVAT 294


>gi|114566277|ref|YP_753431.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337212|gb|ABI68060.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 340

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 70/319 (21%), Positives = 129/319 (40%), Gaps = 16/319 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-- 78
           +   L    G +  T+ SY      FL ++    +       I  L+Y  I +++S    
Sbjct: 14  FTDYLPNTCGSTPQTIDSYRHSFILFLTYMQDEYQISADRVDISDLTYENIVSYLSWLKE 73

Query: 79  -RTQKIGDRSLKRS-LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            R+  +  R+ +++ L+    FL Y     +     IL +   K        L  +    
Sbjct: 74  IRSNGVSTRNQRQAALNSFIRFLMYEFPEHLHEYQRILGIPVKKTPQKEISYLKTEGVAL 133

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLRIQGKGD 195
           L+  V L+     +    R+  IL LLY  G+R+SE + +  +++   +  TL + GKG 
Sbjct: 134 LISQVDLN-----RQNGLRDYVILSLLYTTGIRVSELIQIRVKDLSLQEPFTLLVHGKGQ 188

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R +PL+ S    I +Y     +D    +   LF+    K          + +  +   
Sbjct: 189 KSRYIPLMRSTIPFIQKYLVQKRYDRPERLDEWLFKNHMSKSFTRQGINYIVGKYTKMAR 248

Query: 256 ------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                 +P   + H +RH+ A  L+ +G DL  I+ +LGH  + TT++Y   ++ +    
Sbjct: 249 EIAPDMIPADFSPHKMRHTTAMGLVESGVDLIYIRDLLGHESIKTTEVYARADAMHKRQA 308

Query: 310 MMEIYDQTHPSITQKDKKN 328
           +     +  P    +  KN
Sbjct: 309 IEAASKEIVPPEEAEWDKN 327


>gi|160892657|ref|ZP_02073447.1| hypothetical protein CLOL250_00187 [Clostridium sp. L2-50]
 gi|156865698|gb|EDO59129.1| hypothetical protein CLOL250_00187 [Clostridium sp. L2-50]
          Length = 351

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 62/309 (20%), Positives = 119/309 (38%), Gaps = 22/309 (7%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEE-------KITIQTIRQLSYTEIRAFISKRR 79
           IE   S  T   Y  D + F  FL     +        IT++ I  L   +I  ++   +
Sbjct: 35  IENRTSSRTRLGYARDIKTFYNFLCSECPQFRGRKPIDITLEDISALEAEDIEEYLEYLK 94

Query: 80  TQKI-------GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
             +         +R++KR LS ++ F  YL K      +    +   K        L+  
Sbjct: 95  YYEKDGKVYTNAERAIKRKLSALRVFYAYLYKNDRIKSNPAEKVDMPKIHGKTITRLDTN 154

Query: 133 QALTLVDNVL------LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           +    +D V        H          R+ AIL L+ G G+R+SE + +  +++  + S
Sbjct: 155 EVADFLDAVEYGDHLTKHQQAYHAKTKVRDLAILTLMLGTGIRVSECVGIDLKDVDFNNS 214

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            +++  KG     V     V  A+ +Y +     +     +  LF   + K ++    + 
Sbjct: 215 RVKVTRKGGYESYVYFGDEVTDALTDYLEERKHIEPVSGYENALFLSSQKKRMSVRSVEM 274

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
            +++    +      T H LR ++ T L    GD+  +  +LGH  ++TT+  Y +++  
Sbjct: 275 LVKKYSEGVIPLKHITPHKLRSTYGTELYRETGDIYLVADVLGHSDVNTTRKHYADMDED 334

Query: 305 NGGDWMMEI 313
                   +
Sbjct: 335 RRRSARNRV 343


>gi|255692297|ref|ZP_05415972.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
 gi|260622031|gb|EEX44902.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
          Length = 368

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 130/291 (44%), Gaps = 30/291 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L  ++  S  T+++Y      F+ +           ++I +L   +I  +I   
Sbjct: 94  EGYLE-LLEQKRYSPSTVKTYRAYFSDFMEYHKG--------RSIDRLKVADINKYILYL 144

Query: 79  -RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +KI        ++ IK + + +K  K         +   K+  +LP  L+  +   +
Sbjct: 145 VNEKKISVSQQNMRINAIKFYYEQVKGGKRQYYG---GITRAKEYKTLPEVLSRDEVKRI 201

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +              + ++  ++ L+Y  GLR SE L+LTPQ+I+ ++  +RI GKG K 
Sbjct: 202 LSC----------LTNQKHHCMISLIYSAGLRRSELLNLTPQDIVSERMLVRIMGKGKKC 251

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGL 256
           R   L   V   + EY+           +  LF G    +  +     + +++  +  G+
Sbjct: 252 RYSLLSEKVLHELREYF------KEYRPKKWLFEGDTPGEQYSASALVKVLKEAAQRAGI 305

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                 H LRHSFATHLL  G DLR+IQ +LGH  + TT IY +V S +  
Sbjct: 306 KHRVHVHMLRHSFATHLLEQGTDLRTIQELLGHNDIKTTSIYLHVTSAHKS 356


>gi|325953803|ref|YP_004237463.1| integrase [Weeksella virosa DSM 16922]
 gi|323436421|gb|ADX66885.1| integrase family protein [Weeksella virosa DSM 16922]
          Length = 355

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 128/295 (43%), Gaps = 29/295 (9%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             + ++  L + +  S  T+++Y  +   FL F      E +T   ++         F+ 
Sbjct: 82  AFKQFINYLTL-KSYSNNTIKTYRTEFLSFLNFFDDVAVENLTPDQLQAY-------FLV 133

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                K+ + ++   ++ +K + + + K +        ++   KK   LP+ LN K+ L 
Sbjct: 134 CATQHKLSEATINSRMNAVKFYYEKVLKYERM----FFDIPRPKKPLQLPKTLNRKEILL 189

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195
           L               + ++  IL L YG GLR+SE   L   +I     T+RI +GKG 
Sbjct: 190 LFSVTD----------NLKHLMILKLCYGMGLRVSELAKLKIIDIDSQTMTVRIERGKGK 239

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R V L  S+ + +  YY      +       LF G  G  ++    Q+  +       
Sbjct: 240 KDRFVTLPQSILEDLRLYY------VTYRPSYFLFEGRGGSEISTRTIQKVFKDAMHKAK 293

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           +  +   H+LRHS+ATHLL  G D+  IQ +LGH  + TT  YT+V++      +
Sbjct: 294 IQKNVGIHSLRHSYATHLLELGTDISHIQKLLGHESIKTTLSYTHVSNHTLRSVI 348


>gi|218442243|ref|YP_002380571.1| integrase [Cyanothece sp. PCC 7424]
 gi|218175384|gb|ACK74114.1| integrase family protein [Cyanothece sp. PCC 7424]
          Length = 289

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 127/296 (42%), Gaps = 37/296 (12%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + WL       G S  T+ SY    R+FL F+          + +  ++  +++ + 
Sbjct: 21  RLLEMWLD------GHSPHTVDSYRRSARRFLDFVN---------KPLHLVTLADLQLWR 65

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-PRALNEKQA 134
           +      +   S   +++ IKS L +  +  +   +  + +++ K  ++L  R LNE++ 
Sbjct: 66  ASLTH--LAPSSQGTAMAAIKSLLSFGHQIGVLPTNVGIALKSPKVKDTLNERILNEEEV 123

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQG 192
           +T++ N            D RN  +L LLY  GLR+SE  +L  ++    +    + + G
Sbjct: 124 MTMIANE----------PDERNRVLLRLLYAGGLRVSELCALKWKDLKSRNQSGQVTVFG 173

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLR 251
           KG K R V L   V + +      C          P+F    G   L+     R ++   
Sbjct: 174 KGGKTRTVLLPSGVWQEL------CQIRGKSRGADPVFPSRMGGGHLDRTQVYRIVKAAA 227

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
              G+  + + H LRH+ A+H L  G  L  +Q+ LGH  ++TT+ Y +    +  
Sbjct: 228 SRAGIEGNVSPHWLRHAHASHSLDRGAPLHLVQATLGHSSVATTERYLHARPNDSS 283


>gi|116622416|ref|YP_824572.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225578|gb|ABJ84287.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 332

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 70/305 (22%), Positives = 116/305 (38%), Gaps = 24/305 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   L  +R +S  T+ SY    R  L F      +  +   +  L  + + AF+     
Sbjct: 15  FTTRLMAQRKVSPHTIASYRDTFRLLLQFAQKRLRKAPSQLGLDDLDASLVGAFLEDLEN 74

Query: 81  QKI-GDRSLKRSLSGIKSFLKYLKKR-----KITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++  G RS    L+ I+SF +Y          I     +L + N ++  +L   L   + 
Sbjct: 75  RRHNGARSRNLRLTAIRSFFRYASLEAPAHSGIIQR--VLAIPNQRQRRALVGFLTRPEI 132

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLRIQGK 193
             L+        + T+W+  R+ A L      GLR+SE   L  +++       +R +GK
Sbjct: 133 EALL-----AAPNRTQWLGRRDHAFLLTAVQTGLRLSEMTGLRQEDVSLGAGAHVRCRGK 187

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R  PL       +  +      +        LF   RG PL+    Q  + +    
Sbjct: 188 GRKERCTPLAKPTAAVLKAWI----REQGRGDSKTLFPSTRGGPLSADGVQHLLARHVAQ 243

Query: 254 LGL------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                        + H LRH+ A  LL  G D   I   LGH  + TTQIY + +     
Sbjct: 244 ARKHCASLRKKRVSPHVLRHAAAMELLQGGVDRAVIALWLGHESVETTQIYLDADLALKE 303

Query: 308 DWMME 312
           + + +
Sbjct: 304 EALAK 308


>gi|196250966|ref|ZP_03149649.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|196209530|gb|EDY04306.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 304

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 66/312 (21%), Positives = 130/312 (41%), Gaps = 23/312 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +L E + +LQ    E+G S  T+ SY  D  QFL  L     + +T   IR+     I+ 
Sbjct: 1   MLHEYETYLQ----EKGFSPNTVISYLNDVNQFLKDLHLRPGDYVTSADIRKW----IQQ 52

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK---KSNSLPRALN 130
            ++    + +   ++ R L+ ++SF  +  +     ++ + ++++LK   + N     L 
Sbjct: 53  MLNPVEGKPLAISTINRRLNSLRSFYAWAVEHYKLEQNPMKDIQDLKSADEDNEKIMWLT 112

Query: 131 EKQALTLVDNVLLHTSH----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           E++   L+  +          + +    R+ A++YLL   GLR+ E  +L   ++  +  
Sbjct: 113 EEEFEDLLHRMRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMK 172

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGV 242
            +RI GKG K+R VP+   +   + ++             +     +F   R    +   
Sbjct: 173 RIRIVGKGMKVRTVPISNILLAELEDWLKFRAEMAKKKPHVAESPYVFYSQRSPKFSVRG 232

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIYTNV 301
            QR I             T H  RH+F   +L     D+  ++ + GH  ++TT  Y   
Sbjct: 233 IQRMIESYSL---PNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKD 289

Query: 302 NSKNGGDWMMEI 313
           +  +  D +  +
Sbjct: 290 SYSDLADAVEAL 301


>gi|83956466|ref|ZP_00964886.1| putative integrase/recombinase [Sulfitobacter sp. NAS-14.1]
 gi|83839321|gb|EAP78509.1| putative integrase/recombinase [Sulfitobacter sp. NAS-14.1]
          Length = 329

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 71/310 (22%), Positives = 125/310 (40%), Gaps = 21/310 (6%)

Query: 13  ELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           +L K    +L ++L  ER  S  T  +Y    +  + F A    ++  +  I  +    I
Sbjct: 3   DLAKHLAAFLREHLPHERRASVHTCDAYAYSFQLLVTFAAGRLRKRPCLLQIEDIDVPTI 62

Query: 72  RAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPR 127
            AF+    + +    RS    L+ +KSF +YL+ R        L +  +   K    L  
Sbjct: 63  LAFLEHIEQVRDNKARSRNARLAAVKSFFRYLEHRVPAVLDQALRVHAIPMKKIDQGLVA 122

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-S 186
           +L+  +   L+D               R+ A+L+L +  GLR+SE + +          +
Sbjct: 123 SLSRAEVQALLD-----APDRRTASGIRDRAMLHLAFSGGLRVSELVGVGLDQFDGRSPA 177

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           ++ I GKG + R++PL      A+  +  + P          LF     + +    F+  
Sbjct: 178 SIHIIGKGRRERVLPLWQETAAAMRAWIAIRPEV----GDTALFLNNADRMMTRSGFEYI 233

Query: 247 IR-QLRRYLGL-----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           ++       G+       S T H LRHS A H+L    D+R +   LGH  L +T+IY  
Sbjct: 234 LKKHAAAAAGIAPTLATKSITPHVLRHSCAMHMLQATRDIRKVALWLGHATLQSTEIYLR 293

Query: 301 VNSKNGGDWM 310
            +     + +
Sbjct: 294 ADPTEKLEML 303


>gi|116625845|ref|YP_828001.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229007|gb|ABJ87716.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 363

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 79/340 (23%), Positives = 128/340 (37%), Gaps = 32/340 (9%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+   LP ++   +   R  +  +L   RG S  T+ SY       L FLA    + IT 
Sbjct: 1   MKAP-LPNLLGAAI---RDYFTDHLPRLRGTSPHTIHSYRDSMVLLLRFLARQRNKPITG 56

Query: 61  QTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKY---LKKRKITTESNILNM 116
             +  L    I AF+S   + +K    +    LS I  F  +        +     +L +
Sbjct: 57  LDLTDLDPPGILAFLSHLEKERKNCVSTRNVRLSAIHVFFHFVASRNPEHLELAQRVLGI 116

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              +        L   +   ++          T    +R+ A+L  ++  G R+ E   L
Sbjct: 117 PFKRARQRAMDYLEYDEIDAIL-----KAIDRTTPQGSRDYALLATMFNTGGRVQEIADL 171

Query: 177 TPQNIMDDQST-LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
              ++   +   +R+ GKG K R  PL P     +  + D    DL    +  +F   RG
Sbjct: 172 RACDLQLTKPFQVRLFGKGRKERYCPLWPQTAAVLRAFSDQRTLDLRSESR--VFLNHRG 229

Query: 236 KPLNPGVFQRYIRQLRRYLGL---------PLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           +PL     +     L + LGL               H++RHS A  LL +G DL SI  +
Sbjct: 230 RPLTRFGIRYI---LAKCLGLACADVPNLRTKRLHPHSVRHSTAVALLKSGVDLSSISHL 286

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEI----YDQTHPSIT 322
           LGH   +TT  Y  V+ +     + ++        HP   
Sbjct: 287 LGHASPTTTNRYAKVDLEMKRQAIAKVKPVPAAPAHPGAR 326


>gi|13272355|gb|AAK17117.1|AF302086_1 DNA integrase IntI [Pseudomonas aeruginosa]
          Length = 317

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 74/328 (22%), Positives = 134/328 (40%), Gaps = 64/328 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLQTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTT 295
           SFAT LL +G D+R++Q +LGH  +STT
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSDVSTT 309


>gi|189500094|ref|YP_001959564.1| putative transcriptional regulator, TetR family [Chlorobium
           phaeobacteroides BS1]
 gi|189495535|gb|ACE04083.1| putative transcriptional regulator, TetR family [Chlorobium
           phaeobacteroides BS1]
          Length = 408

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 75/315 (23%), Positives = 136/315 (43%), Gaps = 60/315 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           R  S  T QSY+   R+F  FL          ++ + +  ++++ F+S     +++   +
Sbjct: 106 RHRSYRTEQSYKAWVRRFGAFLEH--------KSPQAVEQSDLQRFLSSLAVERRVSAST 157

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++ + +    +++  +K++     +     +K   LP  L+ ++  ++++ +     +
Sbjct: 158 QNQAFNALLFLFRHVLDKKVSGMEATVRSNRPRK---LPVVLSREEVRSILEIM-----N 209

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
           E  W+      +  L+YG GLRI E L L  ++I  D+  L ++ GKG+K R      ++
Sbjct: 210 EVTWL------MASLIYGGGLRIDECLKLRIKDIDFDRGFLTVRSGKGNKDRQTLFPKNL 263

Query: 207 RKAIL------------------------------------EYYDLCPFDLNLNIQLPLF 230
            + +                                     E+     F        P+ 
Sbjct: 264 AEPLRNHLSEIRNIHEEDRRNGIEGVSMPGALAYKYPNAGKEWGWFWVFPSANLSADPVT 323

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             IR   + P   Q+  +Q R   G+    + HTLRHSFATHLL  G D+R++Q +LGH 
Sbjct: 324 NTIRRHHMYPTTVQKAFKQAREKAGVVKQASVHTLRHSFATHLLEAGYDIRTVQELLGHA 383

Query: 291 RLSTTQIYTNVNSKN 305
            L TT IYT+V  KN
Sbjct: 384 NLQTTMIYTHVAKKN 398


>gi|260890377|ref|ZP_05901640.1| tyrosine recombinase XerD [Leptotrichia hofstadii F0254]
 gi|260859997|gb|EEX74497.1| tyrosine recombinase XerD [Leptotrichia hofstadii F0254]
          Length = 257

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 69/258 (26%), Positives = 118/258 (45%), Gaps = 18/258 (6%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           +   ++   +I  +I     +K+   S+ R +S +K+F K+    K   +     ++ LK
Sbjct: 10  KNFSEIEEKDIFEYIENL-NEKLRRNSVLRKVSALKTFYKFCYLNKDVEKDPTGMIKTLK 68

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +   LP  L  K+   +VDN              +N  I+ +L   G RISE L+L  ++
Sbjct: 69  REQRLPEILTLKEMKQIVDNC------PHTPEGMQNKLIIKILIATGARISETLNLEIKD 122

Query: 181 -IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPL 238
               D   +++ GKG K RI+P+  S+   I  Y     P   N +    +F   R +  
Sbjct: 123 VENQDYEFIKVLGKGSKYRIIPIYDSLENEIKNYLAIYRPKLKNASESFKIFPNTRREK- 181

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
               F + ++ + +   +  +   H  RHS AT LL NG D+R +Q ILGH  ++TT++Y
Sbjct: 182 ----FWKDLKTIAKNAKIEKNVYPHIFRHSLATILLGNGADIRIVQEILGHANITTTEVY 237

Query: 299 TNVNSKNGGDWMMEIYDQ 316
           T+V        +  IY+ 
Sbjct: 238 THV----EKSKLKIIYNN 251


>gi|91204063|emb|CAJ71716.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 433

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 81/318 (25%), Positives = 128/318 (40%), Gaps = 55/318 (17%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-T 80
           L+ L   +  S  T Q+Y    ++F  F+      K  I T   L   ++R ++S     
Sbjct: 112 LRELIRLKHYSYSTEQTYIEWAKKFHTFILDSKGIKFEIDT---LDSNDVRNYLSYLALK 168

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q++   +  ++ S +    K +   ++    + +     K+   LP  L  +    L   
Sbjct: 169 QRVSSSTQNQAFSALLFLFKNVLNVELGDLGDTVRA---KRGTKLPVVLTVEDVQELF-- 223

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRI 199
                    K +  RN  I+ L+YG GLR+ E   L  ++I  D + + ++ GKGDK R 
Sbjct: 224 ---------KQVKGRNLLIIQLIYGSGLRLMELARLRVKDIDFDSNMIFVRSGKGDKDRS 274

Query: 200 VPLLPSVR----------------------------KAILEYYDLCPFDLNLNIQLPLFR 231
             L   V+                             A+   Y   P D       P  R
Sbjct: 275 TMLPEFVKPELKLHLDKVKVLHNEDVEKGYGEVYLPNALDRKYPNAPKDWGWQYVFPSER 334

Query: 232 --------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                    IR   L+    Q  ++   +  G+  + + HTLRHSFATHLL NG ++R +
Sbjct: 335 LSVDLRSGKIRRHHLSDKAIQNMVKGAVKKAGIVKNASVHTLRHSFATHLLMNGVNIREV 394

Query: 284 QSILGHFRLSTTQIYTNV 301
           Q +LGH  L TT IYT+V
Sbjct: 395 QDLLGHKNLETTMIYTHV 412


>gi|169830947|ref|YP_001716929.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637791|gb|ACA59297.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 286

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 74/299 (24%), Positives = 126/299 (42%), Gaps = 24/299 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             ++  +L + RGL+  T   Y    R+FL ++     E   +  +  L   + R  + K
Sbjct: 6   LNDFQNHL-LGRGLAPATAGVYLGHVRRFLAWVEGTHGE-ADVAAVTSLDVADYRRHLLK 63

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R       ++  +L  + SF  + K   +        +R  ++    PR L  ++   L
Sbjct: 64  DR----KPATVNNALDALSSFFAWAKDAGLVQADPTDGVRRAQEERGAPRWLTRREVGAL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKG 194
           V  V  H S         + A++ LL   GLR+SEA+ L  Q+ +  +     +  +GKG
Sbjct: 120 VRAVQKHGSKR-------DQALVTLLLHTGLRVSEAVGLKTQDAVIRERSGHVIVRRGKG 172

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +K R VPL  + RKA+ ++    P          LF G    PL     ++   +L R  
Sbjct: 173 EKYREVPLNVTARKALQDWLAAHP------GGPWLFPGRGEAPLTRWAAEKMFAKLGRLA 226

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           G+    T H LRH+F   L+  G  L  +  + GH  L+TT  YT    ++    + ++
Sbjct: 227 GVE--VTPHKLRHTFCKMLVDAGESLDRVAVLAGHANLNTTARYTRPGVQDLERAVEKL 283


>gi|78777445|ref|YP_393760.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
 gi|78497985|gb|ABB44525.1| tyrosine recombinase XerD subunit [Sulfurimonas denitrificans DSM
           1251]
          Length = 278

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 74/311 (23%), Positives = 142/311 (45%), Gaps = 37/311 (11%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  E + +++ + + + LS+ ++ +Y CD +Q  + L          + +  L    +  
Sbjct: 1   MSNELEAFIEYISVIKALSRKSVDAYTCDLKQIELALN---------KPLISLDSKTLFN 51

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            +S+ + +    R+L R LS + +F  +  K +   E     ++  K    LP+ L+ +Q
Sbjct: 52  LLSEYKNK----RTLNRKLSSVNAFFDFCYKNQFVDEK--KKVKFSKIPKLLPKFLSYQQ 105

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                    L     +  +  R+ A++  LY  G RISE L+L  ++I  +   +R   K
Sbjct: 106 I-----QNALSQVDRSSVLGLRDYAMIIFLYATGARISECLALRREDIEGEWLHIR-HAK 159

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K RIVP+    + A+  Y +          +  ++   +G+ L+     +  ++    
Sbjct: 160 GEKERIVPIAFVAKTAVDAYMNEL-----KKTKEYVWSNYKGEKLSRISAYKITQKYL-- 212

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                  + H LRHS+AT L++ G DLR +Q +LGH  L TTQIYT++  ++    + E 
Sbjct: 213 -----GVSPHVLRHSYATALIAGGADLRVVQELLGHSSLLTTQIYTHIQKQD----LKET 263

Query: 314 YDQTHPSITQK 324
            +  HP   + 
Sbjct: 264 LEVCHPMAKEH 274


>gi|241992549|gb|ACS73618.1| IntI1 [uncultured bacterium]
          Length = 330

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 77/335 (22%), Positives = 136/335 (40%), Gaps = 64/335 (19%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
            LP + +  LL + +  L+ L      S  T ++Y    + F+ F               
Sbjct: 22  ELPALRAVRLLDQMRERLRML----HYSMRTEEAYLHWCKAFIRFHGRRHP--------A 69

Query: 65  QLSYTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           +++  E+ AF++     + +   S +++LS +      +  +++     + ++       
Sbjct: 70  EMAGPEVEAFLTHLAADRGLAPSSHRQALSAVLFLYGKVLGQQL---PWMQDIGRPVPKR 126

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            LP  L+  +   ++  +              +  +  LLYG GLRI+EAL L  +++  
Sbjct: 127 RLPVVLSVPEVREVLAQM-----------TGEHLLLAQLLYGTGLRITEALQLRVKDLDF 175

Query: 184 DQSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------ 212
               + ++ GKG K R+V L  S+  A+ E                              
Sbjct: 176 GHRAVIVREGKGAKDRVVMLPQSLMPALREQLGRVRAVWAADVEAGTAGVEMPHALDRKY 235

Query: 213 ------YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
                 +     F  + +   P    IR   L    FQR  ++     G+    T HTLR
Sbjct: 236 PRMGASWAWFWVFPQDHHSTDPRSGVIRRHHLYDQTFQRAFKRAVVAAGIEKPATPHTLR 295

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           HSFATHLL +G D+R++Q +LGH  ++TT IYT+V
Sbjct: 296 HSFATHLLQSGSDIRTVQELLGHADVATTMIYTHV 330


>gi|332971281|gb|EGK10244.1| tyrosine recombinase XerC [Desmospora sp. 8437]
          Length = 302

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 72/303 (23%), Positives = 136/303 (44%), Gaps = 27/303 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N+L +L+ + G S  T+++YE    QF+ +    T E+   +++  +   + +  +  R 
Sbjct: 15  NFLFDLQSD-GRSPKTMKTYEGVVHQFIRWFEDTTGERFDPESVTPIDAADYKRHLLDRS 73

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  ++ ++   +K +  +L K+ +  ES   +++ +K+    PR L+ K+   L+ 
Sbjct: 74  ----KPATVNKARIALKRYFDWLVKQGVCKESPWKSIQPVKQGRQAPRWLDRKEQRALIR 129

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKGDK 196
            V        K  + R+ AI++LL   GLR+ E   L  +++   +     +   GKG K
Sbjct: 130 QV-------QKERNPRDIAIVFLLLHGGLRVEELCHLQLEDVKLSERKGKAVVRHGKGGK 182

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R VPL   VRKA+ E+  +       +    LF   R   +     Q  +R+  +  G+
Sbjct: 183 WREVPLNRDVRKALEEWLAVR-----SSFSPWLFVSTRKDQMTTRAVQYVVRKYGQRAGM 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF------RLSTTQIYTNVNSKNGGDWM 310
               + HTLRH+F   L   G  L  I ++ GH        ++TT IYT    ++    +
Sbjct: 238 DQ-CSPHTLRHTFCHELAVKGVPLDVIAALAGHMTADGRPNIATTAIYTTPGDQDLRRAV 296

Query: 311 MEI 313
            ++
Sbjct: 297 DQL 299


>gi|304404723|ref|ZP_07386384.1| integrase family protein [Paenibacillus curdlanolyticus YK9]
 gi|304346530|gb|EFM12363.1| integrase family protein [Paenibacillus curdlanolyticus YK9]
          Length = 307

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 85/309 (27%), Positives = 137/309 (44%), Gaps = 27/309 (8%)

Query: 16  KERQNWLQNLEI---ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
              +  L   +I   +RG SK T Q Y  D +     L         + +IR++   ++ 
Sbjct: 4   DAYEEDLHMFKIWMKDRGYSKDTQQGYLNDIQLLCRSLRGKP-----LPSIRKI---DVM 55

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNE 131
           + ++  R +  GD +  R+LS I+ F K + + +    +   ++   K     LP  L E
Sbjct: 56  SHLTDARERGAGDGARNRALSAIRLFFKVMIEFERMEHNPAADVSKSKVEKNRLPLYLEE 115

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
                L+ +V  +          R+ A+L L+  CGLR+SE   L  Q+   +   L I 
Sbjct: 116 SYLGDLLRSVEGN-------FRVRDIAMLALMSYCGLRVSEVSQLNLQDFDPEAGQLSIL 168

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG K R +PL PS+   + +           N + P F    G+ ++    Q  + +  
Sbjct: 169 GKGRKWRYIPLQPSIITLLKQCLQERIPPKRKN-EHPFFVSRLGRRISRRTVQFIVERTF 227

Query: 252 RYLG------LPLSTTAHTLRHSFATHLLS-NGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
                          +AH LRHSFAT+LLS +  DLR++Q +LGH  +STTQIYT++  K
Sbjct: 228 EQFKQQHEHMAERKFSAHKLRHSFATNLLSTDKVDLRTLQELLGHADISTTQIYTHITDK 287

Query: 305 NGGDWMMEI 313
                M  +
Sbjct: 288 KKKQAMAAV 296


>gi|294776711|ref|ZP_06742176.1| integron integrase [Bacteroides vulgatus PC510]
 gi|294449455|gb|EFG17990.1| integron integrase [Bacteroides vulgatus PC510]
          Length = 376

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 74/285 (25%), Positives = 132/285 (46%), Gaps = 30/285 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-R 79
           + + L   R  S+ T+++Y    ++F  + A           +R +   EI A+I     
Sbjct: 98  YAETLRQLR-YSEHTVRAYTTYFKEFQQYFAGRN--------LRYIRPEEINAYIVHLID 148

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           T+ I        ++ IK + +    + +  E     ++  K+  +LP  L++++  +++D
Sbjct: 149 TRGISSCQQNLRINSIKFYFE----KVLGLERKCYEVKRAKRERTLPDVLSKEEIKSILD 204

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR 198
                        D R   +  LLY  GLRISE L L P +I   +S +R++ GKG K R
Sbjct: 205 A---------TGPDIRLFCMFSLLYSAGLRISELLDLKPHDINVSRSLIRVRQGKGRKDR 255

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
              L   + + + EY  L         Q  LF   +G+P    +  + +++  +  G+  
Sbjct: 256 YTLLSKPLVRKLTEYAKLY------KPQEWLFERYKGEPFTESIVSKKLKEAAKEAGITK 309

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
               H LRHSFATHL+  G DL+ ++ +LGH +L TT++Y ++  
Sbjct: 310 RVYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHIAD 354


>gi|89899991|ref|YP_522462.1| phage integrase [Rhodoferax ferrireducens T118]
 gi|89344728|gb|ABD68931.1| phage integrase [Rhodoferax ferrireducens T118]
          Length = 291

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 77/308 (25%), Positives = 131/308 (42%), Gaps = 30/308 (9%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E  S  +   RQ  ++++ + R L+  T  +Y    R+   F+          ++    S
Sbjct: 2   ESSSQAVSPLRQRMIEDMRL-RKLAPKTQSAYVRAVRKLAGFIG---------RSPDTAS 51

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
             ++R F            +L  ++ G+  F      R+      +  M++++  + LP 
Sbjct: 52  AEDLRRFQLHMVDSGASPITLNATIVGLNFFFSITLGREEV----MAKMQSVRVPHRLPV 107

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L++++   L+  V             ++   L L YG GLR+ E ++L   +I   + T
Sbjct: 108 VLSKEEVARLLAAV----------GHIKHQTALSLAYGTGLRVGEVVALKVSDIDSQRMT 157

Query: 188 LRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQR 245
           LR+ QGKG K R   L P + + +  ++ +      +     LF G+     L      R
Sbjct: 158 LRVEQGKGRKDRYAMLSPVLLERLRCWWRVARAQGKMLDGGWLFPGLNPIESLGTRQLNR 217

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            I +      +    + HTLRHSFATHLL    D+R IQ +LGH RL TT  Y  V +  
Sbjct: 218 AIHEAALVARIDKRVSMHTLRHSFATHLLEQKVDIRVIQVLLGHNRLDTTAQYVQVAT-- 275

Query: 306 GGDWMMEI 313
             D + E+
Sbjct: 276 --DILREV 281


>gi|224369730|ref|YP_002603894.1| phage-specific recombinase/integrase XerD [Desulfobacterium
           autotrophicum HRM2]
 gi|223692447|gb|ACN15730.1| phage-specific recombinase/integrase XerD [Desulfobacterium
           autotrophicum HRM2]
          Length = 337

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 74/317 (23%), Positives = 121/317 (38%), Gaps = 16/317 (5%)

Query: 9   IVSFELLKERQNWLQ-NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           +   +       +L   L  ++  SK T+ SY    +  L F     +  +    +  LS
Sbjct: 1   MKPTDFATHLTEFLSVYLPRQKNASKNTIASYRDTFKLLLRFCLEQKDIPVEKLNMSMLS 60

Query: 68  YTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKR---KITTESNILNMRNLKKSN 123
           +  I  F+     + K    +  + L+ I SF +Y +      I     I+ +   K   
Sbjct: 61  HVIITDFLEWLEEERKCCIATRNQRLAAIHSFFRYAQYEEPSGILHFQKIIALPIKKAPK 120

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
                L  +    L+         +      R+  +L +LY  G R+ E + L  +N++ 
Sbjct: 121 PSVPHLTPETMKLLL-----SQPDKMTAKGRRDITLLSVLYDSGCRVQELIDLKIRNVIL 175

Query: 184 DQ-STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           D  + L + GKG+KIR VPL+ +    +  Y      D +     PLF   +   L    
Sbjct: 176 DNPAVLILTGKGNKIRRVPLMRNTLVLLQNYLQEHSLDKDWKRDYPLFINKQRNKLTKEG 235

Query: 243 FQRYIRQL-----RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
               I Q      R    +P   T H  RHS A HLL    +L  I+  LGH  + TT+I
Sbjct: 236 IAYIISQYVGPAKRMSASMPKKVTPHMFRHSKAVHLLQADVNLIYIRDFLGHQDVRTTEI 295

Query: 298 YTNVNSKNGGDWMMEIY 314
           Y   +S+     +   Y
Sbjct: 296 YAKCDSELKRQAIANAY 312


>gi|319649924|ref|ZP_08004074.1| phage integrase family domain-containing protein [Bacillus sp.
           2_A_57_CT2]
 gi|317398362|gb|EFV79050.1| phage integrase family domain-containing protein [Bacillus sp.
           2_A_57_CT2]
          Length = 304

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 62/305 (20%), Positives = 131/305 (42%), Gaps = 13/305 (4%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             Q++L + E  + ++  TL+SY+    Q   FL         +  +++++   I+ FI 
Sbjct: 5   AIQDFLDDREF-KNVTPNTLESYKLIIGQLNDFLTENE-----VVNVQEVTPNHIKKFIL 58

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             + +     +    L  I++F  Y+ + +I T++    ++  K+   +     +     
Sbjct: 59  HYQKKGNNATTTNSKLQRIRAFFNYMIECEIITQNPAKKIKKAKEDIKI-DVFTDYHIKQ 117

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           +++        E  +   R+ +I+ +L G G+R+SE  +L   ++     TL + GK  K
Sbjct: 118 MLNYYRRIKQREKAFYAYRDHSIIVILIGTGIRLSEMTALKWSDVDFQNHTLSVFGKNRK 177

Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
              +P+   V K +  Y   C  F    N+   +F     +PL P   +   ++L + + 
Sbjct: 178 RETMPITEKVVKELSAYKVYCEQFFGKENLHENIFTNRSSEPLTPDAVKNIFKRLSKIMN 237

Query: 256 LPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
                 +AHT RH+F    +  G    ++Q ++ H  ++ T+ Y        G+ + E  
Sbjct: 238 FKDVRLSAHTFRHTFCQRCIHAGMSTFAVQRLMRHSSIAVTEKYA----AMWGNDLREQN 293

Query: 315 DQTHP 319
           D+ +P
Sbjct: 294 DKFNP 298


>gi|87302036|ref|ZP_01084870.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Synechococcus sp. WH 5701]
 gi|87283604|gb|EAQ75559.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Synechococcus sp. WH 5701]
          Length = 323

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 73/330 (22%), Positives = 132/330 (40%), Gaps = 61/330 (18%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
             + + +++ R  ++ T+ SY    ++FL F          ++  R++   EI AF+S  
Sbjct: 11  DRFREEMQV-RHYARRTITSYAQWVKRFLRFH--------GMRHPREMGEEEINAFLSHL 61

Query: 79  RTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            T+  +   +  ++LS +    + +    +    N+  +   ++   LP  L   +   +
Sbjct: 62  ATEGQVSASTQNQALSALLFLYRTVLSGDV---GNLEGVVRARQRKRLPVVLTVAEVKAV 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDK 196
           +             ++     +  LLYG GLR+ EAL L  +++      L ++ GKGDK
Sbjct: 119 LSQ-----------LEGVEQLVAQLLYGSGLRLMEALRLRVKDVDCQARQLTVRSGKGDK 167

Query: 197 IRIVPLLPSVRKAILEYY------------------------------------DLCPFD 220
            R+  L  SV + +  Y                                         F 
Sbjct: 168 DRVTMLPTSVVEPVQAYLLAVREIHRADLAAGWGRVMLPLALGRKYPTAASEWAWQWVFP 227

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
                     R      ++P + Q+ +++     G+    + HT RHSFATHLL  G D+
Sbjct: 228 QAHRWHDRNNRTEGRHHIDPSLIQKAVKRAVLSAGVSKQASCHTFRHSFATHLLERGHDI 287

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           R+IQ +LGH  + TT IYT+V ++     M
Sbjct: 288 RTIQELLGHSDVKTTMIYTHVLNRGPCGVM 317


>gi|237708280|ref|ZP_04538761.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|229457833|gb|EEO63554.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
          Length = 376

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 74/285 (25%), Positives = 132/285 (46%), Gaps = 30/285 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-R 79
           + + L   R  S+ T+++Y    ++F  + A           +R +   EI A+I     
Sbjct: 98  YAETLRQLR-YSEHTVRAYTAYFKEFQQYFAGRN--------LRYIRPEEINAYIVHLID 148

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           T+ I        ++ IK + +    + +  E     ++  K+  +LP  L++++  +++D
Sbjct: 149 TRGISSCQQNLRINSIKFYFE----KVLGLERKCYEVKRAKRERTLPDVLSKEEIKSILD 204

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR 198
                        D R   +  LLY  GLRISE L L P +I   +S +R++ GKG K R
Sbjct: 205 A---------TGPDIRLFCMFSLLYSAGLRISELLDLKPHDINVSRSLIRVRQGKGRKDR 255

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
              L   + + + EY  L         Q  LF   +G+P    +  + +++  +  G+  
Sbjct: 256 YTLLSKPLVRKLTEYTKLY------KPQEWLFERYKGEPFTESIVSKKLKEAAKEAGITK 309

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
               H LRHSFATHL+  G DL+ ++ +LGH +L TT++Y ++  
Sbjct: 310 RVYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHIAD 354


>gi|163783966|ref|ZP_02178933.1| recombinase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880762|gb|EDP74299.1| recombinase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 291

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 72/313 (23%), Positives = 134/313 (42%), Gaps = 54/313 (17%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L      S  T+++Y  D +QF              + +  ++  +I  F    
Sbjct: 8   ELYLAYLAD---KSPNTVKNYNVDLKQFAQI--------AGDKDVESITKADIAKFRMVL 56

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +++++   ++ R L+ + SF +YL   ++ + S I      K SN +P +L  ++   ++
Sbjct: 57  QSKRLKSSTIARKLACLNSFFQYLIDLELISSSPITKSHRPKVSNKIPSSLTHEEIKRVI 116

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS------------ 186
           +N            +  +  I+ +L   GLR +E L +  +NI+ +++            
Sbjct: 117 ENAD----------NIMDKLIIKILLTTGLRSAEILDIRRENIIIERNGQLFNIDYIENL 166

Query: 187 ------TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                  +++ GKG+K RIVPL  +V + +  Y       L      P+F      P++ 
Sbjct: 167 QEGDIAYIKVLGKGNKERIVPLSENVLEELFNY-------LKKYKVSPIF------PISY 213

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               R I  + +  G+      H LRH+ AT  L +G +LR IQ +LGH    TT  Y  
Sbjct: 214 HSLWRRIINIGKKAGVI--LHPHKLRHTAATLALQSGAELRVIQELLGHASPLTTARYAK 271

Query: 301 VNSKNGGDWMMEI 313
           VN K   +   ++
Sbjct: 272 VNQKQLIEATKKL 284


>gi|13475380|ref|NP_106944.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14026132|dbj|BAB52730.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 302

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 64/281 (22%), Positives = 123/281 (43%), Gaps = 25/281 (8%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R  S+ T ++Y  D  +   FL          ++    +  ++R F  +++   +   ++
Sbjct: 24  RRFSQETQRNYLRDIGRLATFLG---------RSPHTATTDDLRRFQIEQQDDGVPVPTM 74

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
              +S ++ F  +   R          +  L     LP  L+  +   L++         
Sbjct: 75  NSIVSALRFFFTHTVDR----PDLARKLVRLAHPRKLPVVLSRDEVARLLNAT------- 123

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR 207
                 ++ A L + YG GLR++E  +L   +I  ++  +R+ +GKG + R   L   + 
Sbjct: 124 ---TCLKHQAALSVAYGAGLRVAEVSALKVADIDSERMLIRVERGKGGRYRNAMLSQDLL 180

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
             + +++ +      ++    LF G    KP++     R + +  +   +      HTLR
Sbjct: 181 LLLRQWWKVGRQQGVMHRDGWLFPGQHAMKPISTRQLYRVVVEAAQAADIAKRVGPHTLR 240

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           HSFATHLL +G D+R IQ +LGH +L++T  YT V ++   
Sbjct: 241 HSFATHLLEDGTDIRIIQVLLGHAKLNSTAFYTKVATRTVR 281


>gi|186474603|ref|YP_001863574.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198562|gb|ACC76524.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 331

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 67/301 (22%), Positives = 121/301 (40%), Gaps = 22/301 (7%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RT 80
           L+ L  +R L++ T  SY       L +L+   +      TI  LS + +R+F++   + 
Sbjct: 16  LEYLVTDRNLARNTQASYRDTLTLLLPYLSKDRKTSADRLTIDDLSPSLLRSFLAYLEKE 75

Query: 81  QKIGDRSLKRSLSGIKSFLKY---LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +     +    L+ I S  ++        +   + I  +   K   +    +++ +   L
Sbjct: 76  RGCSGVTRNTRLATIHSLARFIGMHSPEHVAWSAEIRAIPFRKTPKATLTYMDKPEIDAL 135

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLRIQGKGDK 196
           +    + T      +  R+ A+L  +Y  G R  E   LT  + +   S ++R+ GK +K
Sbjct: 136 LQVPDIRTP-----LGRRDYALLLFMYNTGARADEVAHLTVGDCVLHGSLSVRLVGKANK 190

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG- 255
            R  PL   V   +       PF         +F    G+PL        +R++      
Sbjct: 191 ARWCPLWADVADVL------RPFVAGRATHDFVFLNRLGQPLTRFGIYGLVRRVVERAAE 244

Query: 256 -----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                     + H +RHS A HLL +G D+ +I++ LGH  L TT IY  V+ +     +
Sbjct: 245 TSPSLAAKQISPHCIRHSCAVHLLRSGNDINTIRAWLGHVSLDTTNIYAEVDLEMKAKAL 304

Query: 311 M 311
            
Sbjct: 305 A 305


>gi|323138768|ref|ZP_08073833.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322396015|gb|EFX98551.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 335

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 59/306 (19%), Positives = 130/306 (42%), Gaps = 21/306 (6%)

Query: 20  NWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK- 77
            +L +++  +RG S  + ++Y    R  L F A   + + +  T+  +    + AF++  
Sbjct: 10  AFLREHMPQQRGYSLHSCEAYATCFRLLLTFAADRLKTRPSRLTLEAIDAAMVLAFLAHI 69

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPRALNEKQA 134
            + +     +    L+ IK+F++Y++ ++ +    +  +  +   +    L R L   + 
Sbjct: 70  EQDRGNSPATRNLRLAAIKAFMRYVELQRPSALEQVAQIDAIPGKRHDQKLIRHLTTAEV 129

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLRIQGK 193
            T++D         +     R+ A+L+L +  GLR+SE + LT   +    + ++ + GK
Sbjct: 130 RTILD-----APDTSTRSGIRDRAMLHLCFAAGLRVSELVGLTMNGVTLHPNPSVLVFGK 184

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G + R +PL     + +  +  +            LF   +G  +    F+  + +    
Sbjct: 185 GRRERSLPLWKETARDVRAWLAVRGNPPTPE----LFVNAKGMAMTRAGFEYILEKHGAI 240

Query: 254 LG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                   +  + + H LRHS A  +L    D+R +   LGH  + TT+IY  ++     
Sbjct: 241 AAKKCPTLVGRTLSPHLLRHSCAVLMLQATRDIRKVALWLGHADIRTTEIYLGMDPSEKL 300

Query: 308 DWMMEI 313
           + +  +
Sbjct: 301 EAVEAV 306


>gi|298482054|ref|ZP_07000243.1| tyrosine recombinase [Bacteroides sp. D22]
 gi|298271918|gb|EFI13490.1| tyrosine recombinase [Bacteroides sp. D22]
          Length = 376

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 74/285 (25%), Positives = 133/285 (46%), Gaps = 30/285 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-R 79
           + + L   R  S+ T+++Y    R+F  + A           +R +   EI A+I     
Sbjct: 98  YAETLRQLR-YSEHTVRAYTVYFREFQQYFAGRN--------LRYIRPEEINAYIVHLID 148

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           T++I        ++ IK + + +  ++         ++  K+  +LP  L++++  +++D
Sbjct: 149 TRRISSCQQNLRINSIKFYFEKVLGQERK----CYEVKRAKRERTLPDVLSKEEIKSILD 204

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR 198
                        D R   +  LLY  GLRISE L L P +I   +S +R++ GKG K R
Sbjct: 205 A---------TGPDIRLFCMFSLLYSAGLRISELLDLKPHDINVSRSLIRVRQGKGRKDR 255

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
              L   + + + EY  L         Q  LF   +G+P    +  + +++  +  G+  
Sbjct: 256 YTLLSKPLVRKLTEYTKLY------KPQEWLFERYKGEPFTESIVSKKLKEAAKEAGITK 309

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
               H LRHSFATHL+  G DL+ ++ +LGH +L TT++Y ++  
Sbjct: 310 RVYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHIAD 354


>gi|160890772|ref|ZP_02071775.1| hypothetical protein BACUNI_03217 [Bacteroides uniformis ATCC 8492]
 gi|156859771|gb|EDO53202.1| hypothetical protein BACUNI_03217 [Bacteroides uniformis ATCC 8492]
          Length = 376

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 74/285 (25%), Positives = 133/285 (46%), Gaps = 30/285 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-R 79
           + + L   R  S+ T+++Y    ++F  + A           +R +   EI A+I     
Sbjct: 98  YAETLRQLR-YSEHTVRAYTTYFKEFQQYFAGRN--------LRYIRLEEINAYIVHLID 148

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           T+ I        ++ IK + +    + +  E     ++  K+  +LP  L++++  +++D
Sbjct: 149 TRGISSCQQNLRINSIKFYFE----KVLGLERKCYEVKRAKRERTLPDVLSKEEIKSILD 204

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR 198
                        D R   +  LLY  GLRISE L L P +I   +S +R++ GKG K R
Sbjct: 205 A---------TGPDIRLFCMFSLLYSAGLRISELLDLKPHDINVSRSLIRVRQGKGRKDR 255

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
              L   + + + EY  L         Q  LF   +G+P    +  + +++  +  G+  
Sbjct: 256 YTLLSKPLVRKLTEYAKLY------KPQEWLFERYKGEPFTESIVSKKLKEAAKEAGITK 309

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
               H LRHSFATHL+  G DL+ ++ +LGH +L TT++Y +++ 
Sbjct: 310 RVYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHISD 354


>gi|225567989|ref|ZP_03777014.1| hypothetical protein CLOHYLEM_04062 [Clostridium hylemonae DSM
           15053]
 gi|225163277|gb|EEG75896.1| hypothetical protein CLOHYLEM_04062 [Clostridium hylemonae DSM
           15053]
          Length = 364

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 64/306 (20%), Positives = 121/306 (39%), Gaps = 24/306 (7%)

Query: 32  SKLTLQSYECDTRQFLIFL-------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI- 83
           S  T  +Y  D R F  FL         +T  +  +  + +L   +I  ++   +  +  
Sbjct: 54  SAKTRINYAYDIRVFFHFLMEANPNYKNHTISQFDVSDLEKLEPVDIEEYMEYLKVYRHE 113

Query: 84  ------GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                  ++ L R +S ++SF  Y  K +I T++  L +   K  +     L+  +   L
Sbjct: 114 DELITNSEKGLSRKMSALRSFYSYYFKHQIITKNPTLLVDMPKLHDKAIIRLDADEVALL 173

Query: 138 VDNVLLHTSHETKW-------IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           +D V    S  +            R+ AIL LL G G+R+SE + L   ++    + + +
Sbjct: 174 LDYVETCGSKLSGQALTYYHKTKDRDLAILTLLLGTGIRVSECVGLDLTDVDFKNNGITV 233

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIR 248
             KG    +V     V KA+L Y +            +  LF   + + +     +  ++
Sbjct: 234 TRKGGNQMVVYFGEEVEKALLTYINGDRKAATPLSGHENALFLSTQRRRMGIQAMENMVK 293

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGG 307
           +  R +      T H LR ++ T L    GD+  +  +LGH  ++TT + Y  ++     
Sbjct: 294 KYARQVTPNKKITPHKLRSTYGTSLYKETGDIYLVADVLGHKDVNTTKKHYAAIDEDRRR 353

Query: 308 DWMMEI 313
                +
Sbjct: 354 KAASAV 359


>gi|332297767|ref|YP_004439689.1| integron integrase [Treponema brennaborense DSM 12168]
 gi|332180870|gb|AEE16558.1| integron integrase [Treponema brennaborense DSM 12168]
          Length = 398

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 77/318 (24%), Positives = 130/318 (40%), Gaps = 60/318 (18%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-I 83
           L   +  S+ T+Q+Y      F    A              LS TEI  F+++  T+K +
Sbjct: 91  LLEAKHYSRRTVQAYAKWLIAFGKRFASIPS--------ALLSQTEINLFLTELVTEKNV 142

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
              +  ++L+ +  + +Y+K  +     N+ ++   KK+  +P   ++ +   + D +  
Sbjct: 143 SASTQNQALAALLFYFRYIKGTEPC---NLASVIRAKKTVHIPVVFSKDEVRAIFDQLSD 199

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPL 202
                          I  LLYG G+R+SE L L  Q+I    + + I+ GKG K R   L
Sbjct: 200 EK-----------LLIAQLLYGTGMRLSECLCLRIQDIDFAHNMIIIRNGKGAKDRRTML 248

Query: 203 LPSVRK----------------------------AILEYYDLCPFDLNLNIQLPLFRGIR 234
              + K                            A+ + Y     D       P     +
Sbjct: 249 PHILEKKIRAHIVSVKQLHQADIADGWGVVTLPFALRKKYSGASADFAWQWVFPQKNRWK 308

Query: 235 G--------KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
                      ++  + +R +++  R  G+      HT RHSFATHLL NG D+R++Q +
Sbjct: 309 NTDTGMQGRYHIDASIMERAVQKAVRDAGIYKRGNCHTFRHSFATHLLENGYDIRTVQEL 368

Query: 287 LGHFRLSTTQIYTNVNSK 304
           LGH  + TT IYT+V +K
Sbjct: 369 LGHSDVKTTMIYTHVLNK 386


>gi|256390723|ref|YP_003112287.1| integrase family protein [Catenulispora acidiphila DSM 44928]
 gi|256356949|gb|ACU70446.1| integrase family protein [Catenulispora acidiphila DSM 44928]
          Length = 327

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 74/343 (21%), Positives = 130/343 (37%), Gaps = 47/343 (13%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +          + ++L   R LS  T++ Y  D      F      E+  +    Q+   
Sbjct: 1   MDDAYRAALDRFEEDLRA-RRLSPHTVRGYVADLVDLFGFA-----ERAGVAEPTQIGLD 54

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
             R+++++         +L R  +  +++ +      +        +   K  + LP  L
Sbjct: 55  VARSWLAETAASGAARATLARRTAAARAWGRQASTPGLV------RLVTPKPRSPLPAVL 108

Query: 130 NEKQALTLVDNVLLHTS-HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           +++Q    +       + H    +  R+ AIL  LY    R+SE  +L   ++   + T 
Sbjct: 109 SQRQMTDALTTAADDAATHPHDPLALRDLAILEFLYATAARVSEVCALNLDDVDFTRRTA 168

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYY------------------------------DLCP 218
           R+ GKG + R VP      +A+  +                                   
Sbjct: 169 RLSGKGGRDRTVPFGVPAERALHAWLAADARGAVLAAARANGARRAGAAAAAAVGWVGGG 228

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
             +       +F G RG  ++P V +R +    R       T  H  RH+ ATHL+  G 
Sbjct: 229 GGIQKTETEAVFLGARGSRIDPAVVRRLVHARLRATPNTPDTGPHGFRHTAATHLIEGGA 288

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           DLR +Q +LGH  L+TTQIYT+V ++     +   Y Q+HP  
Sbjct: 289 DLRDVQELLGHATLATTQIYTHVTAER----IKARYAQSHPRA 327


>gi|295401430|ref|ZP_06811400.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|294976480|gb|EFG52088.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
          Length = 304

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 61/308 (19%), Positives = 129/308 (41%), Gaps = 20/308 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              ++  L+ E+G S+ T+ SY  D   F   L  + ++ +T   IR+     I+  ++ 
Sbjct: 2   LNEYVVYLQ-EKGASQNTIISYTNDLNMFFHDLHIHPDDYVTPADIRKW----IQHMLNP 56

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS---LPRALNEKQA 134
              + +   ++ R L+ ++SF  +  +R    ++ + ++++LK ++        L E++ 
Sbjct: 57  AEGKPLAISTINRRLNSLRSFYAWAVERHYIEQNPMKDIQDLKTADEDYEKIMWLTEEEF 116

Query: 135 LTLVDNVLLHTSH----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             L+  +          + +    R+ A++YLL   GLR+ E  +L   ++  +   +RI
Sbjct: 117 EDLLQRMRKKPVRSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMKRIRI 176

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRY 246
            GKG K+R VP+   +   + ++             +     +F   R    +    QR 
Sbjct: 177 VGKGMKVRTVPISNILLAELEDWLKFRAEMAKKKPHVAVSPYVFYSQRSPKFSVRGIQRM 236

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           I             T H  RH+F   +L     D+  ++ + GH  ++TT  Y   +  +
Sbjct: 237 IESYSL---PNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKDSYSD 293

Query: 306 GGDWMMEI 313
             D +  +
Sbjct: 294 LADAVEAL 301


>gi|60681230|ref|YP_211374.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343]
 gi|60492664|emb|CAH07437.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343]
          Length = 294

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 74/285 (25%), Positives = 132/285 (46%), Gaps = 30/285 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-R 79
           + + L   R  S+ T+++Y    R+F  + A           +R +   EI A+I     
Sbjct: 16  YAETLRQLR-YSEHTVRAYTAYFREFQQYFAGRN--------LRYIRPEEINAYIVHLID 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           T+ I        ++ IK + + +  ++         ++  K+  +LP  L++++  +++D
Sbjct: 67  TRGISSCQQNLRINSIKFYFEKVLGQERK----CYEVKRAKRERTLPDVLSKEEIKSILD 122

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR 198
                        D R   +  LLY  GLRISE L L P +I   +S +R++ GKG K R
Sbjct: 123 A---------TGPDIRLFCMFSLLYSAGLRISELLDLKPHDINVSRSLIRVRQGKGRKDR 173

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
              L   + + + EY  L         Q  LF   +G+P    +  + +++  +  G+  
Sbjct: 174 YTLLSKPLVRKLTEYTKLY------KPQEWLFERYKGEPFTESIVSKKLKEAAKEAGITK 227

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
               H LRHSFATHL+  G DL+ ++ +LGH +L TT++Y ++  
Sbjct: 228 RVYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHIAD 272


>gi|188586142|ref|YP_001917687.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350829|gb|ACB85099.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 279

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 63/300 (21%), Positives = 134/300 (44%), Gaps = 26/300 (8%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  +++++N   +   S  TL++YE   R+FL+              + +++  +I  F+
Sbjct: 5   KLLKDFIENSSNQH--SASTLETYERYIRKFLMSWK---------NDLSEVTDDDIDDFL 53

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++   +    R++   ++ +  F  +LK +K  +    +++        LP+ L+E + +
Sbjct: 54  NEYEEKGYNSRTIHVIIAALHDFFSHLKYKKYISVIPTVDVEIPNHEKKLPKPLSEIKII 113

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKG 194
            L +    H          R+ AI+ +L+  G+R+SE +++  ++I  D   + I+ GKG
Sbjct: 114 KLKNEAKDH---------LRDRAIIEVLHWTGVRVSELINIRIEDIWWDTREIWIRKGKG 164

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K R V +    ++ ++EY D    D+       LF   R +P       + + +     
Sbjct: 165 LKERNVIINYICKQYLIEYLDTRSDDI-----PYLFITKRKRPFTRQGVNKLLNKYAIKA 219

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+  + T H  RH+F T L++ G +   +  + GH  +   + YT V  K       +++
Sbjct: 220 GIKENVTPHMFRHTFITDLINKGAEEGVVADLAGHEDIKRLKDYTEVARKRKKLEYEKLH 279


>gi|332977095|gb|EGK13899.1| integrase-recombinase [Desmospora sp. 8437]
          Length = 330

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 131/334 (39%), Gaps = 52/334 (15%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT--- 80
            +  ER  S+ T+ +Y  D   F  FL            +  ++   +R F         
Sbjct: 1   MISAER--SRQTIANYAYDFALFFDFLKEKE------VDLESVTPRMLRRFFRHIENGYE 52

Query: 81  -------QKIGDRS--------------------LKRSLSGIKSFLKYLKKRKITTESNI 113
                  +K    +                     +R  S ++S  +YL K  +  +  +
Sbjct: 53  RTVWVSVKKRDPSTGEVTESLVPRKHFRENTRAGKERKRSSLRSLFRYLVKNDVLDKDPM 112

Query: 114 LNMR----NLKKSNSLPRALNEKQALTLVDN----VLLHTSHETKWIDARNSAILYLLYG 165
                     +    +P  L   +AL L++               W +AR+ A++ +L  
Sbjct: 113 QEYEDATLKARNRKRVPVFLTRDEALRLIEAIGSYHQKQKRRRFAWYEARDRAMILILLN 172

Query: 166 CGLRISEALSLTPQNIMDDQ--STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD-LN 222
            G+R+SE + L   NI  D   + + + GKG K R++ L P+    +  Y +L P + + 
Sbjct: 173 TGMRVSELVGLNLNNIQSDGVSARVIVLGKGGKERMLKLNPAAYTGLRRYMELRPEEGVP 232

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS---TTAHTLRHSFATHLLSNGGD 279
              Q  LF       ++       +++  R   LP      + H LRH+ AT LLSNG +
Sbjct: 233 PEHQQALFLNKNRTRMSRKGVSEALQKYVREANLPPKAANISPHKLRHTLATLLLSNGEN 292

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           LR +Q ILGH  + TTQIYT+V      D +  +
Sbjct: 293 LRVVQEILGHSSIQTTQIYTHVIDSEKDDALDRL 326


>gi|309804168|ref|ZP_07698246.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 11V1-d]
 gi|309805694|ref|ZP_07699734.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 09V1-c]
 gi|308163751|gb|EFO66020.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 11V1-d]
 gi|308164947|gb|EFO67190.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 09V1-c]
          Length = 179

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 63/183 (34%), Positives = 101/183 (55%), Gaps = 7/183 (3%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           +++    T  +  R+ AIL  LY  G+R+SE ++L   +I ++   +++ GKG K R++P
Sbjct: 1   MINMPDTTTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIP 60

Query: 202 LLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +       I +Y           +   +  +F   RG  +      + I++  +  G+  
Sbjct: 61  ISNVAMSWIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLAGINK 120

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + T HTLRH+FATHLL NG DLR +Q ILGH  +STTQIYTN+  K+    +M++Y +TH
Sbjct: 121 NVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKH----IMDVYKRTH 176

Query: 319 PSI 321
           P I
Sbjct: 177 PRI 179


>gi|254508879|ref|ZP_05120988.1| super-integron integrase IntIA [Vibrio parahaemolyticus 16]
 gi|219548193|gb|EED25209.1| super-integron integrase IntIA [Vibrio parahaemolyticus 16]
          Length = 320

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 81/320 (25%), Positives = 132/320 (41%), Gaps = 61/320 (19%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGD 85
           I R  +  T+Q+Y     +F++F       K        L+ + + AF++      K+  
Sbjct: 14  IARHYAPKTIQAYLLWITKFILFNDKAHPSK--------LNESHVEAFLTHLAVDCKVAA 65

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           ++   +L+ I    +   +  ++ E   +  +  +    LP  L + +    + +     
Sbjct: 66  KTQALALNSISFLYREYFRTPLSVE---MKFQKSQLDRKLPVVLTKDEMRRFLMH----- 117

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLP 204
                 ID R    + LLYG GLR+ E + L  Q+I  D   LR+ QGKG K R+V L  
Sbjct: 118 ------IDPRYKLHIMLLYGSGLRVMECVRLRVQDIDYDYKALRVWQGKGGKNRVVTLAS 171

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP--------------------------LFRGI----- 233
                + E   +       +I  P                          LF        
Sbjct: 172 EAISLLKEQQGIALRYYKKDINSPGYAGVHIRPSLQRKYPEAELDFNWHFLFPSHQLSVD 231

Query: 234 ------RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                 +   +N    QR +++  +  G+  + T HTLRHSFATHLL +G D+R++Q  L
Sbjct: 232 PNTGELKRHHINETSLQRAVKRSAKEAGITKAVTCHTLRHSFATHLLESGADIRTVQEQL 291

Query: 288 GHFRLSTTQIYTNVNSKNGG 307
           GH  + TTQIYT+V  + GG
Sbjct: 292 GHSDVKTTQIYTHVIERGGG 311


>gi|296163757|ref|ZP_06846462.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295885996|gb|EFG65909.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 334

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 71/309 (22%), Positives = 126/309 (40%), Gaps = 23/309 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +L++L   R +S  TL SY    R  L F+      +    ++  LS   I AF+  
Sbjct: 13  QEFFLKHLMTHRNVSPQTLWSYRDAFRLLLQFIDTTMHIEPVALSLTHLSPAVILAFLDS 72

Query: 78  R-RTQKIGDRSLKRSLSGIKSFLKYLKKRKIT---TESNILNMRNLKKSNSLPRALNEKQ 133
             + +    RS    L+ ++SF +++   +       ++IL +   +    L  AL+  +
Sbjct: 73  LEKERNNAVRSRNARLAAVRSFFRWVAISRPDFAGLSTSILAIPTKRTDRRLICALSRPE 132

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQ 191
              +     L     +     R+ A+L  +Y  G R+SE  S+    +        + + 
Sbjct: 133 IDAI-----LGAPDLSTPCGRRDHAMLLTMYNTGARVSEITSMACSQVELGGHSSFVHLH 187

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG K R VPL  +   A+ ++      + N      LF   RG+ L        +++  
Sbjct: 188 GKGRKERCVPLWAATADALTKW----MREQNAVPTSLLFTNYRGEQLTRNGVDCILKK-A 242

Query: 252 RYLGL-------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              G+           + H +RH+ ATHLL  G D+  I   LGH  + TT IY   N  
Sbjct: 243 IAGGVNSCPSLSKKHISPHVVRHATATHLLQAGVDISVIALWLGHESIDTTHIYMESNLA 302

Query: 305 NGGDWMMEI 313
           +  + +  +
Sbjct: 303 HKEEALGRL 311


>gi|184155346|ref|YP_001843686.1| integrase [Lactobacillus fermentum IFO 3956]
 gi|183226690|dbj|BAG27206.1| integrase [Lactobacillus fermentum IFO 3956]
          Length = 292

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 60/285 (21%), Positives = 115/285 (40%), Gaps = 17/285 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   Q WL     ++G +KLT+ SY  D R    +L         +   +Q+    +  +
Sbjct: 12  LVSYQEWL----TKKGGAKLTIASYLTDLRDTAAYLTSR-----GVTNWQQVDRATLTVY 62

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +     +     +++R +S ++ F  YL+         +  ++  +     P  L  ++A
Sbjct: 63  LQSLNDKGRRTTTIQRRISSLRRFYVYLQVTGQVNHDPVALLKAKQTPRLAPVGLTPQEA 122

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L D+V        +     N A++ LL   G R +E   L   ++  +   + +    
Sbjct: 123 DLLPDHVPGKGVARER-----NRALVALLVATGARANELRDLQTGDLDLELGVVYL--GQ 175

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
              R+VPL    +  +  Y      D +   +  +F   RG+PL+       +    +  
Sbjct: 176 SSRRLVPLNEQAQTYLTTYLTAR-ADQSATDEGYVFLNNRGQPLSRQSIWEIVNATGQRA 234

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            +  + T   +R  FA  LL++G DL  +Q ++GH  + TTQ+Y 
Sbjct: 235 NIEGAVTPQRVRDGFAYRLLAHGADLSLVQQLMGHQSILTTQVYL 279


>gi|57234341|ref|YP_181631.1| phage integrase family site specific recombinase [Dehalococcoides
           ethenogenes 195]
 gi|57234884|ref|YP_181043.1| phage integrase family site specific recombinase [Dehalococcoides
           ethenogenes 195]
 gi|57234923|ref|YP_181020.1| phage integrase family site specific recombinase [Dehalococcoides
           ethenogenes 195]
 gi|57224789|gb|AAW39846.1| site-specific recombinase, phage integrase family [Dehalococcoides
           ethenogenes 195]
 gi|57225332|gb|AAW40389.1| site-specific recombinase, phage integrase family [Dehalococcoides
           ethenogenes 195]
 gi|57225371|gb|AAW40428.1| site-specific recombinase, phage integrase family [Dehalococcoides
           ethenogenes 195]
          Length = 319

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 72/312 (23%), Positives = 133/312 (42%), Gaps = 21/312 (6%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           IVS  L +  + +L    +E  LS+ T+  Y     Q + ++       + +   ++++ 
Sbjct: 22  IVSTGLRRHLEAFLLACRVED-LSRRTIFDYRQKIGQIIDYMVA-----LGLTDPKEVTA 75

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           + IR F+   + +     S+      IK F  +L +  + + S +  +R  K    + R 
Sbjct: 76  SHIRGFLLT-KQETCQPVSVHGYYRSIKVFFNWLTREGVISFSPMAPIRPPKVPKKIIRP 134

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
               +  +L     L        +  R+ AI+ +L   G+R+ E  ++   +I  D+ T+
Sbjct: 135 YYPDELRSL-----LLACEGRGILSLRDRAIMLVLIDNGIRLGELANINISDIDVDRETI 189

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R+V +    + A+ +Y         ++    L+     K L P      I 
Sbjct: 190 SVWGKGRKQRVVGISKRTQMAVYKYLHAR-----VDNNPSLWVTTDSKTLTPKGIYLAIH 244

Query: 249 QLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +L    GL     + HT RH+ AT  + NGGDL  +QS+LGH  L+ T+ Y    +    
Sbjct: 245 RLGERAGLKDVRNSPHTFRHTAATLSIKNGGDLFQVQSMLGHTTLAMTRRYA---ASLQS 301

Query: 308 DWMMEIYDQTHP 319
           +   E + +  P
Sbjct: 302 EAAAEAHKKFSP 313


>gi|330997069|ref|ZP_08320931.1| integron integrase [Paraprevotella xylaniphila YIT 11841]
 gi|329571567|gb|EGG53249.1| integron integrase [Paraprevotella xylaniphila YIT 11841]
          Length = 376

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 74/285 (25%), Positives = 133/285 (46%), Gaps = 30/285 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-R 79
           + + L   R  S+ T+++Y    R+F  + A           +R +   EI A+I     
Sbjct: 98  YAETLRQLR-YSEHTVRAYTVYFREFQQYFAGRN--------LRYIRPEEINAYIVHLID 148

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           T++I        ++ IK + + +  ++         ++  K+  +LP  L++++  +++D
Sbjct: 149 TRRISSCQQNLRINSIKFYFEKVLGQERK----CYEVKRAKRERTLPDVLSKEEIKSILD 204

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR 198
                        D R   +  LLY  GLRISE L L P +I   +S +R++ GKG K R
Sbjct: 205 A---------TGPDIRLFCMFSLLYSAGLRISELLDLKPHDINVSRSLIRVRQGKGRKDR 255

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
              L   + + + EY  L         Q  LF   +G+P    +  + +++  +  G+  
Sbjct: 256 YTLLSKPLVRKLTEYTKLY------KPQEWLFERYKGEPFTESIVSKKLKEAAKEAGITK 309

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
               H LRHSFATHL+  G DL+ ++ +LGH +L TT++Y ++  
Sbjct: 310 RVYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHIAD 354


>gi|256393898|ref|YP_003115462.1| integrase family protein [Catenulispora acidiphila DSM 44928]
 gi|256360124|gb|ACU73621.1| integrase family protein [Catenulispora acidiphila DSM 44928]
          Length = 354

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 56/271 (20%), Positives = 103/271 (38%), Gaps = 17/271 (6%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG-DRSLKRSLS 93
           T  +Y  D +Q+  + A +  +              +  +      +      +L R +S
Sbjct: 72  TASAYAVDLKQWFAWCALFDVDPFDAV------RAHVDTWAVHLADEGRARPATLARKIS 125

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLK-KSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
            +++F  Y      T+ S +     +K K+  LPR   + Q L                 
Sbjct: 126 AVRNFYAYAVDSGYTSSSPV----PIKDKALHLPRVSRKSQTLGPDREESAAMLEAAAQR 181

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAI 210
             R+ A++ +L   GLR+SE   +  +++   +    +R++ KG + +   + P     +
Sbjct: 182 GVRDEAVVAVLLYQGLRVSELCGINVEDLSSQRGHRVVRLRRKGGEEQDQAIAPPAAGCL 241

Query: 211 LEYYDLCPFDLNLNI---QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             +      D          P+F G  G  L     +  +    R  G+    + H+LRH
Sbjct: 242 DAWLAERARDSAFGAVPASGPVFVGPEGARLTRYQVEWIVESCARAAGVEKKISPHSLRH 301

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +  T LL  G  LR IQ  +GH   +TT+ Y
Sbjct: 302 ACTTMLLDAGVPLRDIQVYMGHANSATTERY 332


>gi|291524090|emb|CBK89677.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 280

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 65/278 (23%), Positives = 121/278 (43%), Gaps = 30/278 (10%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R L   T+ +Y      FL           T + I  L+  ++  F+++++   I   + 
Sbjct: 16  RNLKDSTIHAYCTSVAHFLNH---------TAKDIDALTTDDVDIFLTEKKLSGISPETY 66

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
               SGI+ F K + K+    +     +  +K+   LP  L + +   ++D         
Sbjct: 67  NHYHSGIRFFYKKILKKNWDDDD----IPRMKRDRKLPTVLTKTEISAILDAT------- 115

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVR 207
               + ++ A++  +Y  GLR+SE   L   +I   + T+ I+ GK    R   L     
Sbjct: 116 ---PNLKHKAMIATMYSGGLRVSEVTHLHYDDISRTKKTIHIRDGKSRSDRYTLLADRTL 172

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           + + EY+  C        +  LF        L      ++ R+  +  G+    + H LR
Sbjct: 173 EILTEYWFQC-----GRPRGILFPSSWTGDYLTKDSVIQFFRESAKRAGIQKHVSTHCLR 227

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           HSFA+HL  +G D++ IQ++LGH    +T++Y +V++K
Sbjct: 228 HSFASHLFESGCDVKYIQALLGHRDPKSTEVYLHVSNK 265


>gi|297618199|ref|YP_003703358.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297146036|gb|ADI02793.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 298

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 133/298 (44%), Gaps = 25/298 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   L+  R  ++L+++SY  D R FL +L    E+  T   +  L  +E R F++ 
Sbjct: 19  LERYEDYLKTTR--ARLSVESYMGDLRLFLEWLGGRGEDNPT--AVTPLDASEYRRFLA- 73

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     ++ R +  +++F  +L++  I  ++     + +      PR L   +   L
Sbjct: 74  --DKGYKPATINRKIQSLRAFYGWLQEAGIVPDNPFRRTKAVPAQELAPRWLTRPEQAAL 131

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKG 194
           +  V             R+ A++ L+   GL++ E ++L  ++++  + + ++   QGKG
Sbjct: 132 MRAVRAKGR-------LRDEAMIALMLFAGLKVGELVALEREDVVVRERSGKVVVRQGKG 184

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +K R VPL  + R  +  +       L  N   PL+   +G  L+    Q+ +       
Sbjct: 185 NKRREVPLNATARDILRRW-------LEENPTGPLWPSQKGGRLSKRQVQKIVEDCAYIA 237

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            L    T H LRH+F  +LL  G  +  + ++ GH RL  T+ YT  + ++  + +  
Sbjct: 238 KL-KDVTCHKLRHTFCKNLLDAGVSIDQVAAMAGHSRLDVTKRYTVPSMQDLQEAVER 294


>gi|291612849|ref|YP_003523006.1| integron integrase [Sideroxydans lithotrophicus ES-1]
 gi|291582961|gb|ADE10619.1| integron integrase [Sideroxydans lithotrophicus ES-1]
          Length = 330

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 71/317 (22%), Positives = 127/317 (40%), Gaps = 60/317 (18%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           +  S  T   Y    ++F++F      +         +   E+ AF++    +  +   +
Sbjct: 26  KHYSIRTETQYVQWIKRFILFHGKRHPK--------DMGAAEVEAFLTHLAVEGNVSAST 77

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++LS +    + +   ++       ++   KK   LP  LN ++   +++ +      
Sbjct: 78  QNQALSALLFLYREVLGMELPWLD---DVVRAKKPQRLPSVLNREEVSLVLERM------ 128

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
                +     +  LLYG G+R+ E   L  ++I   Q  + I+ GKG K R+  L  ++
Sbjct: 129 -----EGTYGLMARLLYGTGMRLMECCRLRVKDIDFRQREILIRDGKGAKDRVTMLPETL 183

Query: 207 RKAILEYYDLCPFDLNLN-------------------------IQLPLFRG--------- 232
            K + EY          +                         I   +F           
Sbjct: 184 IKPLQEYLLKRRRLFEDDLSKGMTEVYLPDALARKYPNAAQEWIWQYVFPSGSYSVDPRS 243

Query: 233 --IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
              R   ++  + QR +++     G+    T HTLRHSFATHLL  G D+R++Q +LGH 
Sbjct: 244 GRERRHHIDEKLLQRAMKKAVTASGITKFATPHTLRHSFATHLLEGGYDIRTVQELLGHS 303

Query: 291 RLSTTQIYTNVNSKNGG 307
            +STT IYT+V +K G 
Sbjct: 304 DVSTTMIYTHVLNKGGR 320


>gi|225572145|ref|ZP_03781009.1| hypothetical protein RUMHYD_00439 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040317|gb|EEG50563.1| hypothetical protein RUMHYD_00439 [Blautia hydrogenotrophica DSM
           10507]
          Length = 351

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 64/303 (21%), Positives = 118/303 (38%), Gaps = 23/303 (7%)

Query: 34  LTLQSYECDTRQFLIFL-------AFYTEEKITIQTIRQLSYTEIRAFISKRR------- 79
            T  SY  D R F  +L            ++ T+  + QL   +I  +    +       
Sbjct: 44  KTRISYAYDIRVFFQYLLEENPTFKNRPMDQFTVDILDQLQVLDIEEYQEYLKVYQNQNK 103

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           T   G+R LKR +S ++SF  Y  KR++   +  L +   K        L+  +   L+D
Sbjct: 104 TTTNGERGLKRKMSSLRSFYAYYYKREMIETNPTLLVDMPKLHQKAITRLDADEVALLLD 163

Query: 140 NVLLHTSHET-------KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
            +       T       +    R+ A++ LL G G+R+SE + L  +++    + +++  
Sbjct: 164 YIEHAGDELTGQKKVYYEKTKERDLALVTLLLGTGIRVSECVGLDVEDLDFKNNGIKVTR 223

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG    IV     V  A+  Y          +  +  LF   + K L     +  +++  
Sbjct: 224 KGGGEMIVYFGSEVETALRRYLKARDNITPVVGHEHALFYSTQRKRLGVQAVENLVKKYA 283

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
             +      T H LR ++ T L    GD+  +  +LGH  ++TT + Y  ++        
Sbjct: 284 SQITTTKKITPHKLRSTYGTALYQETGDIYLVADVLGHRDVNTTKKHYAAIDDSRRRKAA 343

Query: 311 MEI 313
             +
Sbjct: 344 SAV 346


>gi|332884391|gb|EGK04654.1| hypothetical protein HMPREF9456_03396 [Dysgonomonas mossii DSM
           22836]
          Length = 336

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 71/302 (23%), Positives = 132/302 (43%), Gaps = 13/302 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-R 79
           +   L   R LSK T+ SY    R  +I+            T++ ++   +  ++    +
Sbjct: 15  FTDFLIGCRNLSKNTISSYSDTFRLLVIYFNDQQSIPPEKLTLKNINDKSVCNYLDWLQK 74

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRK---ITTESNILNMRNLKKSNSLPRALNEKQALT 136
            ++  + +  + L+ I SF +YL+ +    + +   ++ +   K    +   L   Q   
Sbjct: 75  ERRCSNTTRNQRLAAIHSFFRYLQMQDSKQLLSCQKVMQIPFKKSVQPILNHLTISQV-- 132

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQGKGD 195
              + LL      K  + R+ A+L +LY  G R+ E   L  +N+  +  ST+ + GKG 
Sbjct: 133 ---SSLLRQPDINKKGERRDIALLSVLYDTGARVQELCDLKVRNVRLEPPSTITLTGKGC 189

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL- 254
           K R++P++ +  K +  Y +         +  PLF   R + L+ G     +R+    + 
Sbjct: 190 KTRLIPIVGNTVKLLTNYIEENKLTGTHKLDHPLFYNQRRQALSRGGITHILRKYAHMVK 249

Query: 255 --GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +P   T H LRHS A HLL  G  +  I+  LGH  + TT+IY  ++ +     + E
Sbjct: 250 DKNMPEKITPHILRHSKAMHLLQAGYTMVVIRDWLGHVSVQTTEIYATLDIEAKRKLLEE 309

Query: 313 IY 314
            +
Sbjct: 310 SF 311


>gi|283479604|emb|CAY75520.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 345

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 67/311 (21%), Positives = 131/311 (42%), Gaps = 25/311 (8%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT----- 80
             ER  S+ TL+       +F+ +      ++  I     ++   +  +           
Sbjct: 42  RRERNWSETTLKVQTHHGYRFICWA-----QERGIHHAADVTRPVLERWQRHLYRYRKGN 96

Query: 81  -QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLV 138
            + +  R+ + +L  ++ + ++L K+ +   +   ++   +    LPR  L+ +Q   +V
Sbjct: 97  GEPLSPRTQRTALQPLQVWFRWLAKQNLILANPAADLELPRLEKHLPRTILSVEQVEDIV 156

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197
           +   L+T         R+ A+L LL+  G+R  E   L   +    +  L I QGKG + 
Sbjct: 157 NLCDLNT-----LQGMRDRALLELLWSTGIRRGEVARLETWSADFSRKILTIVQGKGKQD 211

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLG 255
           R++P+       +  Y      ++  +     LF  + G   L        +    R  G
Sbjct: 212 RVIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVAGLTANGITHAVVPYLRAAG 271

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    +    RH+ AT +L NG DLR IQ++LGH  + +TQ YT V+ +     +  ++ 
Sbjct: 272 IEKG-SCXLFRHAMATQMLENGADLRWIQAMLGHRSVESTQXYTQVSIR----ALQAVHA 326

Query: 316 QTHPSITQKDK 326
            THP+   +D+
Sbjct: 327 STHPAEQTEDE 337


>gi|326797736|ref|YP_004315555.1| integrase family protein [Sphingobacterium sp. 21]
 gi|326548500|gb|ADZ76885.1| integrase family protein [Sphingobacterium sp. 21]
          Length = 360

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 77/275 (28%), Positives = 122/275 (44%), Gaps = 30/275 (10%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRS 87
           +  S  T+++Y  +  Q L  L            I  L Y  +RA+I     T KI +  
Sbjct: 98  KAYSPSTIRTYMVEFAQLLYILKDV--------PIDSLGYDRLRAYILYCINTLKISESQ 149

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           L   L+ IK + + +  +          +   KK ++LP+ L++K+   + D V      
Sbjct: 150 LHSRLNAIKFYFEQVLHK----PDFFAEIPRPKKPSTLPKVLSQKEVKRIFDAVR----- 200

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
                + ++  +L L YG GLR+SE ++L   +I   +  + I+ GKG K R VPL  +V
Sbjct: 201 -----NRKHLLMLQLCYGMGLRVSEVVNLKVSDIDSGRLQVLIEAGKGKKDRYVPLPSAV 255

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              + EYY         + +  LF G  G   +    Q   +   +   +      H LR
Sbjct: 256 LDLLREYY------KAYHPKTYLFEGQYGGRYSVRSVQAVFKNAMKAAKVNKPIGIHGLR 309

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           HS+ATHLL  G D+  IQ +LGH  + TT +Y  V
Sbjct: 310 HSYATHLLEYGTDMLFIQQLLGHNDIKTTMLYAKV 344


>gi|283797946|ref|ZP_06347099.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
 gi|291074412|gb|EFE11776.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
 gi|295091862|emb|CBK77969.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 350

 Score =  175 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 61/310 (19%), Positives = 119/310 (38%), Gaps = 23/310 (7%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFL-------AFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           IE   S  T  +Y  D   F  FL           +   T+  + Q+   ++  ++   +
Sbjct: 36  IEPRTSSRTRIAYAYDLSIFFDFLCQTNPLWKDRDKRDFTVDVLDQIGVMDLEEYLEFLK 95

Query: 80  TQK--------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
                        +R L R +S +KSF  Y  + +    +    ++  K        L  
Sbjct: 96  CHSTENKEDLVNTERGLTRKMSSLKSFYNYFFRNERIKTNPAALVKLPKLHEKEIIRLEI 155

Query: 132 KQALTLVDNVLLHTSHETKWIDAR------NSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
            +   L+D V        +           + A++ LL G G+R+SE + L   ++  + 
Sbjct: 156 DEVARLLDLVEDGQELTERQKAYHEKTKIRDLALMTLLLGTGIRVSECIGLNLNDVDFNV 215

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQ 244
             +RI  KG K  I+     V +A+  Y +     +     +  LF  ++ K +N    +
Sbjct: 216 DGIRIHRKGGKEVIIYFGDEVEQALRAYLEERKKMIPAPGNEEALFLSMQKKRMNVRSVE 275

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
             +++  R +      T H LR ++ T+L    GD+  +  +LGH  ++TT + Y  +  
Sbjct: 276 NLVKKYSRIVTPLKKITPHKLRSTYGTNLYRETGDIYLVADVLGHADVNTTKKHYAALED 335

Query: 304 KNGGDWMMEI 313
           +       ++
Sbjct: 336 ERRRSARNKV 345


>gi|241992588|gb|ACS73646.1| IntI [uncultured bacterium]
 gi|241992595|gb|ACS73651.1| IntI [uncultured bacterium]
 gi|241992630|gb|ACS73675.1| IntI [uncultured bacterium]
          Length = 316

 Score =  175 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 79/339 (23%), Positives = 138/339 (40%), Gaps = 61/339 (17%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M  N  P   S +  +        L + R  S  T Q+Y    +++++F      E    
Sbjct: 1   MNSNMPPNTGSGQAPRLLDRIRAALRL-RHYSYRTEQAYVHWAKRYILFHDKRHPE---- 55

Query: 61  QTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
               Q+   E+ AF+S   T++ +   +  ++L+ +    + +  + +     + N+   
Sbjct: 56  ----QMGAAEVEAFLSALATERQVSASTQNQALAALLFLYREVLGQDL---PWLENLTRA 108

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K     P  L  ++   L+D            +   ++ +  L+YG G+R+ E   L  +
Sbjct: 109 KPREKRPVVLTREETSRLLD-----------RLTGVHALMGRLIYGTGMRLMECCQLRIK 157

Query: 180 NIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILE-------------------------- 212
           ++      + I+ GKG K R+  L  S+ + +                            
Sbjct: 158 DVDFGLREITIRSGKGGKDRVTMLPASLLEPLQAQCVQAREWHDADRQAKAPGVFMPDAL 217

Query: 213 ----------YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
                     +     F  + +   P+ R IR   L P   QR IRQ  +  G+    T 
Sbjct: 218 ARKYPRASTSWSWFWLFPASQHSTDPVSRIIRRHHLYPQSLQRAIRQAVQAAGIVKPATT 277

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           HTLRHSFATHLL +G D+R++Q +LGH  ++TT IYT+V
Sbjct: 278 HTLRHSFATHLLMSGYDIRTVQELLGHADVATTMIYTHV 316


>gi|60256815|gb|AAX14926.1| integrase [Xanthomonas perforans]
          Length = 339

 Score =  175 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 75/328 (22%), Positives = 137/328 (41%), Gaps = 64/328 (19%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            +LL + ++ L+     R  S  T Q+Y    R+F++                Q+   E+
Sbjct: 16  PKLLDQVRDRLR----VRHYSLRTEQAYLSWIRRFILASGRRHP--------AQMGQAEV 63

Query: 72  RAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
            AF+++  T   +   +  ++L+ +    + + +        + N+   K+   +P  L+
Sbjct: 64  EAFLTRLATDGQVSAGTQNQALAALLFLYREVLR---IELPWMENLVRAKRPRRIPVVLS 120

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            ++   L+             ++     +  LLYG G+R+ E L L  +++ D +  + +
Sbjct: 121 REEVARLL-----------AALEGPCWLMASLLYGSGMRLLECLRLRIKDVDDARGEIVV 169

Query: 191 Q-GKGDKIRIVPLLPSVRKAILEYY----------------------------------- 214
           + GKG K R VPL  S+++ +                                       
Sbjct: 170 RDGKGGKDRRVPLPRSLKEVLQRQRERALLLHAADLAAGTGRVFLPHALARKYPNAGAEP 229

Query: 215 -DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                F      + P    +    ++  V QR ++  RR+ G+    T HTLRHSFATHL
Sbjct: 230 GWQYLFPSAPQSRDPRSGRVGRHHVSEEVLQRAVQMARRHAGIVKPATCHTLRHSFATHL 289

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           L  G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 290 LEAGHDIRTVQELLGHKDVATTQIYTHV 317


>gi|241992598|gb|ACS73653.1| IntI [uncultured bacterium]
          Length = 316

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 78/339 (23%), Positives = 137/339 (40%), Gaps = 61/339 (17%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M  N  P   S +  +        L + R  S  T Q+Y    +++++F      E    
Sbjct: 1   MNSNMPPNTGSGQAPRLLDRIRAALRL-RHYSYRTEQAYVHWAKRYILFHDKRHPE---- 55

Query: 61  QTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
               Q+   E+ AF+S   T++ +   +  ++L+ +    + +  + +     + N+   
Sbjct: 56  ----QMGAAEVEAFLSALATERQVSASTQNQALAALLFLYREVLGQDL---PWLENLTRA 108

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K     P  L  ++   L+D            +   ++ +  L+YG G+R+ E   L  +
Sbjct: 109 KPREKRPVVLTREETSRLLD-----------RLTGVHALMGRLIYGTGMRLMECCQLRIK 157

Query: 180 NIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILE-------------------------- 212
           ++      + I+ GKG K R+  L  S+ + +                            
Sbjct: 158 DVDFGLREITIRSGKGGKDRVTMLPASLLEPLQAQCVQAREWHDADRQAKAPGVFMPDAL 217

Query: 213 ----------YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
                     +     F  + +   P+   IR   L P   QR IRQ  +  G+    T 
Sbjct: 218 ARKYPRASTSWSWFWLFPASQHSTDPVSCIIRRHHLYPQSLQRAIRQAVQAAGIVKPATT 277

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           HTLRHSFATHLL +G D+R++Q +LGH  ++TT IYT+V
Sbjct: 278 HTLRHSFATHLLMSGYDIRTVQELLGHADVATTMIYTHV 316


>gi|83860039|ref|ZP_00953559.1| transposase [Oceanicaulis alexandrii HTCC2633]
 gi|83852398|gb|EAP90252.1| transposase [Oceanicaulis alexandrii HTCC2633]
          Length = 615

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 129/289 (44%), Gaps = 26/289 (8%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
            + +P I +  +   RQ  + ++ + R  S+ T ++Y  D  +F  FL          + 
Sbjct: 2   NDLVPVISATPVSPLRQRLIDDMNM-RHFSRETQRNYIRDVGRFAAFLG---------RP 51

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
               +  ++R F  ++R   +   ++   +S ++ F  +   R          +  +K+ 
Sbjct: 52  PDTATSEDLRRFQVEQREAGMPIPTMNSVVSALRFFFTHTLDR----PDLARRLVRMKQM 107

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             LP  L+  +   L+                ++ A L + YG GLR+ E   L  +++ 
Sbjct: 108 RKLPVVLSRDEVARLLGAT----------TCLKHQAALSVAYGAGLRVGEVAMLKVRDVD 157

Query: 183 DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNP 240
            ++  LR+ +GKG + R   L   +   + +++ L      ++    LF G+   KP++ 
Sbjct: 158 SERMLLRVERGKGGQYRNAMLPADLLTLLRQWWKLGREQGVMHHDGWLFPGLHAMKPIST 217

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
               R + +  +  G+    + HTLRHSFATHLL +G D+R IQ++LGH
Sbjct: 218 RQLHRIVVEAAQAAGITKRVSPHTLRHSFATHLLEDGTDIRIIQALLGH 266


>gi|257093411|ref|YP_003167052.1| integron integrase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257045935|gb|ACV35123.1| integron integrase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 340

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 72/316 (22%), Positives = 121/316 (38%), Gaps = 63/316 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           +  S  T Q+Y    R+F++F      +++           E+  F++    +  +   +
Sbjct: 35  KHYSIRTEQAYRGWVRRFILFHGKRHPQEMG--------AREVETFLTHLAVEGRVSAST 86

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
             ++ S +    K      + T+   L ++ + K    LP  L  ++   L+        
Sbjct: 87  QNQAKSALLFLYK----EVLRTDLPWLDDVESAKSGKRLPVVLTPEEVQRLL-------- 134

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS 205
                I+     IL LLYG G+RI E L L  +++   +  + ++ GKG K R+  L   
Sbjct: 135 ---GPIEGTTGLILRLLYGTGMRIMECLRLRVKDVDFARREILVREGKGFKDRVTMLPEK 191

Query: 206 VRKAI------------------------------------LEYYDLCPFDLNLNIQLPL 229
           +   +                                     E+     F        P 
Sbjct: 192 LMAPLGEHLARVKALHAADLSAGFGDVYLPWALERKYPNAAREWAWQYVFVAARRPVDPR 251

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL-G 288
              +R   +     QR + Q  R  G+    T HTLRHSFAT LL  G D+R++Q +L G
Sbjct: 252 SGAVRRHHVEAQSIQRAMHQALRVAGVSKPATPHTLRHSFATSLLETGYDIRTVQELLVG 311

Query: 289 HFRLSTTQIYTNVNSK 304
           H  +STT IYT+V  +
Sbjct: 312 HSDVSTTMIYTHVLKR 327


>gi|254431040|ref|ZP_05044743.1| integron integrase [Cyanobium sp. PCC 7001]
 gi|197625493|gb|EDY38052.1| integron integrase [Cyanobium sp. PCC 7001]
          Length = 323

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 75/337 (22%), Positives = 137/337 (40%), Gaps = 64/337 (18%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +PE      L   Q + + L+  R  ++ T+ +YE   R++L F         +++  R+
Sbjct: 1   MPEHAKPPGL--IQRYREELQT-RHYARRTVTTYEQWLRRYLRFH--------SLRHPRE 49

Query: 66  LSYTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           +   E+ AF++      ++   +  ++LS +    + L +R +     +  +   +    
Sbjct: 50  MGSAEVNAFLTHLAVDLQVSASTQNQALSALLFLYRELLERDL----ELAGVVRARTPRR 105

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L  ++  +++             +D   + +  LLYG GLR+ EAL L   ++   
Sbjct: 106 LPVVLTVEEVRSVLQ-----------RLDGTEALVAGLLYGSGLRLMEALRLRVHDLDFG 154

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAIL-------------------------------- 211
           +  L ++ GKG K R   L   + + +                                 
Sbjct: 155 RQELTVRNGKGGKDRRTLLPRRLAEQLRPHLQEVKSIHQQDLAEGWGRVQLPHALGRKYP 214

Query: 212 ----EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
               E+     F        P         ++P + Q+ +R+     G+    T  +LRH
Sbjct: 215 HAPVEWGWQWVFPQQTRWCNPASGEQGRHHMDPSLIQKAVRRAVLAAGISKPATCQSLRH 274

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           SFATHLL  G D+R+IQ +LGH  L TT IYT+V ++
Sbjct: 275 SFATHLLERGQDIRTIQELLGHSDLKTTMIYTHVLNR 311


>gi|222446012|ref|ZP_03608527.1| hypothetical protein METSMIALI_01661 [Methanobrevibacter smithii
           DSM 2375]
 gi|261349449|ref|ZP_05974866.1| integrase-recombinase protein [Methanobrevibacter smithii DSM 2374]
 gi|222435577|gb|EEE42742.1| hypothetical protein METSMIALI_01661 [Methanobrevibacter smithii
           DSM 2375]
 gi|288861812|gb|EFC94110.1| integrase-recombinase protein [Methanobrevibacter smithii DSM 2374]
          Length = 302

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 134/289 (46%), Gaps = 22/289 (7%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K +++++ +L+     S+ T+++Y     +F  +L          + I+  +     ++I
Sbjct: 28  KIKESYITSLKN-NNYSQNTIKTYSSIIHKFTTYLKNQIAIYNEKEFIKYFN-----SYI 81

Query: 76  SKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
              +  + +    +      +K FL++     + +      +   K+  S P  L +K+ 
Sbjct: 82  LYLKQVKNVSQNYIYLVTVVVKKFLEFNNIHFLDS------ITTPKRIKSPPNFLTQKEV 135

Query: 135 LTLVDNVLLHTSHETKW---IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
             L+D++    + ++ +      R+  I+ LLY  GLR+SE ++LT  N+  +   L I 
Sbjct: 136 KQLLDSITWDENSDSDFRIITKLRDKLIVTLLYSSGLRVSELINLTVDNVNFEGKQLSIV 195

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GK +  R++ L  S ++ I +Y +      N      L     G PL P   Q  I++  
Sbjct: 196 GKNNS-RVILLDESTKQLIQKYLEKRTQKSN-----YLVVNKSGNPLTPRYVQLMIKKYG 249

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              G+    T H LRHS+ATHL   G +++ IQ +LGH  LSTTQIY+ 
Sbjct: 250 NESGIEKKITPHILRHSYATHLFEQGVNIKIIQQLLGHSNLSTTQIYSQ 298


>gi|56410450|ref|YP_145824.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
 gi|56378347|dbj|BAD74256.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
          Length = 304

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 60/308 (19%), Positives = 128/308 (41%), Gaps = 20/308 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              ++  L+ E+G S+ T+ SY  D   F   L    ++ +T   IR+     I+  ++ 
Sbjct: 2   LNEYVAYLQ-EKGASRNTIISYTNDLNIFFHDLHIRPDDYVTPADIRKW----IQHMLNP 56

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS---NSLPRALNEKQA 134
              + +   ++ R L+ ++SF  +  +     ++ + ++++LK +   +     L E++ 
Sbjct: 57  EEGKPLAISTINRRLNSLRSFYAWAVEHHYIEQNPMKDIQDLKTADEDHEKIMWLTEEEF 116

Query: 135 LTLVDNVLLHTSH----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             L+  +          + +    R+ A++YLL   GLR+ E  +L   ++  +   +RI
Sbjct: 117 EDLLQRMRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMKRIRI 176

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRY 246
            GKG K+R VP+   +   + ++ +           +     +F   R    +    QR 
Sbjct: 177 VGKGMKVRTVPISNILLAELEDWLEFRAEMAKKKPHVAASPYVFYSQRSPKFSVRGIQRM 236

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           I             T H  RH+F   +L     D+  ++ + GH  ++TT  Y   +  +
Sbjct: 237 IESYSL---PNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKDSYSD 293

Query: 306 GGDWMMEI 313
             D +  +
Sbjct: 294 LADAVEAL 301


>gi|241992502|gb|ACS73585.1| IntI [uncultured bacterium]
          Length = 307

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 70/330 (21%), Positives = 134/330 (40%), Gaps = 64/330 (19%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +  +LL + ++ L+     +  S  T Q+Y    ++F++F      +++           
Sbjct: 4   LPPKLLDQVRDQLR----VKHYSIRTEQAYVDWIKRFILFHGKRHPQEMG--------AP 51

Query: 70  EIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           E+  F++    +  +   +  ++LS +    + + K  +    N++     K+   LP  
Sbjct: 52  ELEVFLTDLAVRGGVSASTQNQALSAVLFLYREVLKIDLPWLDNVIRA---KRPQRLPVV 108

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L   +   +++ +           D   + +  LLYG G+R+ E + L  +++   ++ +
Sbjct: 109 LTPVEVRAVLERM-----------DGVYALMGRLLYGTGMRLMECVRLRVKDVDFGRNEI 157

Query: 189 RIQ-GKGDKIRIVPLLPSVRKAIL------------------------------------ 211
            I+ GKG K R+  L  +V   +                                     
Sbjct: 158 LIRDGKGGKDRVTMLPSTVAATLADHLQRRRVIFEDDLAAGKAEVWLPDALAKKYPGAGT 217

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           E+     F        P    +R   ++  + QR +++      L    T HTLRHSFAT
Sbjct: 218 EWAWQYVFCSGSYSTDPRSGRVRRHHIDEKLLQRAMKKAVTAARLTKPATPHTLRHSFAT 277

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           HLL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 278 HLLEGGYDIRTVQELLGHSDVSTTMIYTHV 307


>gi|332662500|ref|YP_004445288.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100]
 gi|332331314|gb|AEE48415.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 355

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 130/296 (43%), Gaps = 31/296 (10%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   Q +++ L++ +  S  T+ +Y  +  Q L  L          + + +L  + +R++
Sbjct: 81  LPALQLYIETLQL-KAYSLNTINTYRNEFAQLLCILKD--------KAVNELDSSRLRSY 131

Query: 75  ISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
                   K+ + +L   ++ +K + + + KR+         +   KK + LP+ +N K 
Sbjct: 132 FLYCTNILKLSENTLHSRINAVKFYFEQVLKREKF----FFEIPRPKKPSILPKVINAKD 187

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QG 192
              L +             + +++ +L L YG GLR+SE ++L   +I      + I + 
Sbjct: 188 IKKLFEVT----------TNLKHNTMLKLCYGMGLRVSEIVNLKITDIDSKNLQVFIERA 237

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R   L  S+ + +  Y+      +    +  LF G  G   +    Q+      +
Sbjct: 238 KGKKDRYANLPESILEQLRAYF------VEYKPKKYLFEGQYGDQYSVRSAQKVFADALK 291

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
              +  +   H LRHSFATHLL  G D+  IQ +LGH  L TT  YT+V+ +   +
Sbjct: 292 KAKINKNVGIHGLRHSFATHLLEAGTDISFIQELLGHNDLKTTLRYTHVSQQTIKN 347


>gi|163814066|ref|ZP_02205458.1| hypothetical protein COPEUT_00219 [Coprococcus eutactus ATCC 27759]
 gi|158450515|gb|EDP27510.1| hypothetical protein COPEUT_00219 [Coprococcus eutactus ATCC 27759]
          Length = 391

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 69/337 (20%), Positives = 129/337 (38%), Gaps = 26/337 (7%)

Query: 1   MEGNNLPEIVSFELLKERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFLAFY----- 53
           M+ NN+  ++  E+L E   +  +    IE   S  T   Y  D + F  FL  +     
Sbjct: 20  MDENNI--LLLREILSELPQYVTITFRGIENTTSTRTRLGYARDIKIFYEFLCEHNPYFN 77

Query: 54  --TEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS-------LKRSLSGIKSFLKYLKK 104
             T + I    + +L   +I  F+   R  +   R+       LKR LS ++ F  YL K
Sbjct: 78  GKTPKDIKTDDLSRLEAEDIEEFLDAMRLYEKNGRTYTNGEQALKRKLSALRVFFAYLYK 137

Query: 105 RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR------NSA 158
                 +    +   K        +   +    +DNV        +           + A
Sbjct: 138 NNRIDSNAAEKVDMPKIHEKKIIRMEPNEVADFLDNVEYGDGLTERQKKYHEKNKVRDLA 197

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +L L+   G+R+SE + +   +I  D   ++I  KG K   V       +A+++Y +   
Sbjct: 198 LLSLMLSTGMRVSECVGIDIHDIDFDNMRIKIIRKGGKEAFVYFSDEACEALIKYLEERK 257

Query: 219 FDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
             +     +  LF   + K ++    +  +++           T H LR +F T L    
Sbjct: 258 KLVPESGHENALFLSSQLKRISVRSVENIVKKYSLTSVPLKHITPHKLRSTFGTELYRAT 317

Query: 278 GDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
            D+  +  +LGH  ++TT+  Y +++      +  E+
Sbjct: 318 DDIYLVADVLGHSDVNTTRKHYADMDEDRKRRFRNEV 354


>gi|319787522|ref|YP_004146997.1| integron integrase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466034|gb|ADV27766.1| integron integrase [Pseudoxanthomonas suwonensis 11-1]
          Length = 335

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 72/320 (22%), Positives = 129/320 (40%), Gaps = 60/320 (18%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRS 87
           +  S  T Q+Y    R+++             +   +L    + AF++   T+  +   +
Sbjct: 33  KHYSLRTEQAYLYWIRRYVRAWL--------PRHPAELDGAAVEAFLTGLATRDNVAAST 84

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++L+ +    + +          + N+   K+   LP  L+  Q + L++        
Sbjct: 85  QNQALAALLFLYREVLG---IELPWMENVVRAKRPRRLPVVLSRAQVVRLLE-------- 133

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
               +  R + +  LLYG GLR+ E   L  +++  +++ L I+ GKG K R+  L  ++
Sbjct: 134 ---RLSGREALMAGLLYGSGLRLMECARLRVKDVDLERNELTIRDGKGGKDRMTVLPGAL 190

Query: 207 RKAILEYY------------------------------------DLCPFDLNLNIQLPLF 230
           R+A+L                                           F        P  
Sbjct: 191 REALLRQLAEVRLLHARDLACGLGRVHLPHALARKYPNAAAEPGWQYVFPATRISVDPRD 250

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
              R   ++  V Q  +R+  R  G     T HTLRH FATHLL +G D+R++Q +LGH 
Sbjct: 251 GVRRRHHIDEKVLQSAVRRAAREAGFDKPVTPHTLRHCFATHLLESGADIRTVQELLGHK 310

Query: 291 RLSTTQIYTNVNSKNGGDWM 310
            ++TTQIYT+V ++     +
Sbjct: 311 DVATTQIYTHVLNRGALGVL 330


>gi|302386391|ref|YP_003822213.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302197019|gb|ADL04590.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 351

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 64/310 (20%), Positives = 121/310 (39%), Gaps = 23/310 (7%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFL-------AFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           IE   S  T  +Y  D R F  FL       +      IT+  +  L   +I  ++   +
Sbjct: 37  IEPRTSSRTRIAYAYDLRVFFDFLIKENPVISKLHIRDITLDQLDALRVIDIEEYMEYLK 96

Query: 80  TQ--------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
            +           +R + R +S +KSF  Y  + +    +    ++  K        L+ 
Sbjct: 97  YRFNDKNQEVTNKERGIMRKISSLKSFYNYYYRNERLQTNPASLVQLPKLHEKDIIRLDI 156

Query: 132 KQALTLVDNVLLHTSHETKWIDAR------NSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
            +   L+D V    +   K           + A+L L+ G G+R+SE + L   +I    
Sbjct: 157 DEVALLLDEVENGEALTEKQKAYHGKTKVRDLALLTLMLGTGIRVSECVGLDIDDIDLKN 216

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQ 244
             +RI  KG K   V     V  A+L+Y +     +  +  +  LF  ++ K +     +
Sbjct: 217 GGIRIHRKGGKEVTVYFGSEVENALLDYLEERSIVIPEDGHEKALFLSLQRKRIAVRSVE 276

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
             +++  + +      T H LR ++ T L    GD+  +  +LGH  ++TT + Y  +  
Sbjct: 277 NLVKKYSKLVTPLKQITPHKLRSTYGTSLYKETGDIYLVADVLGHSDVNTTKKHYAALED 336

Query: 304 KNGGDWMMEI 313
           +       ++
Sbjct: 337 ERRRSARNKV 346


>gi|226349908|ref|YP_002777021.1| putative integrase/recombinase [Rhodococcus opacus B4]
 gi|226245823|dbj|BAH47090.1| putative integrase/recombinase [Rhodococcus opacus B4]
          Length = 329

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 67/310 (21%), Positives = 115/310 (37%), Gaps = 20/310 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-R 79
           +L+ L  +R  S+ T+ +Y    R  L F+   T    +      L    I AF+    +
Sbjct: 12  FLERLSTQRRASEHTIAAYRDAMRLLLAFMEQRTHRAPSRLDWTDLDADAICAFLDHLEK 71

Query: 80  TQKIGDRSLKRSLSGIKSFLKY---LKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            +    R+    L+ I+S   Y            + +L +   +   ++   L+E +A  
Sbjct: 72  DRANSARTRNARLTAIRSLFSYAALRHPEHAALIAQVLAIPPKRFDKAIVCFLDEPEAAA 131

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTLRIQGKGD 195
                +L  +  + W   R+ A++ L    GLR+SE L L   +++      +R  GKG 
Sbjct: 132 -----MLAAADRSTWAGRRDHALMTLAMQTGLRVSELLGLNCGDVVTGTSGHVRCVGKGR 186

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R VP+  SVR  +  +                F    G+ L+    QR +        
Sbjct: 187 KERSVPMTESVRSVMNVWLIER----AGQRDDAAFCTRTGRRLSVDAVQRRVNIYAAQAR 242

Query: 256 ------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                 +    + H  RH+ A  LL  G D   I   LGH  + +T  Y + +       
Sbjct: 243 QSCPSLVGKHLSPHVFRHTCAMTLLHAGVDTTVIALWLGHADVRSTTAYLHADLAIKERA 302

Query: 310 MMEIYDQTHP 319
           +  +   T P
Sbjct: 303 LAHLASSTSP 312


>gi|95931413|ref|ZP_01314121.1| Integron integrase [Desulfuromonas acetoxidans DSM 684]
 gi|95132531|gb|EAT14222.1| Integron integrase [Desulfuromonas acetoxidans DSM 684]
          Length = 335

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 73/317 (23%), Positives = 125/317 (39%), Gaps = 60/317 (18%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           R     T ++Y    R++++F           Q  + +  +EI AF++     +K+   +
Sbjct: 31  RHYRPRTEETYCQWVRRYILFHKK--------QHPKDMGESEINAFLTYLAVKKKVSAST 82

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++LS I    +++  R I     ++  R  K    LP  +  ++   ++D        
Sbjct: 83  QNQALSAILYLYRHVIGRDIGDLGEVIRARKPK---RLPVVMTREEVKAVLDQ------- 132

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
               ++     +  LLYG GLR+ E L L  Q++      L ++ GKG K R   L  S+
Sbjct: 133 ----LNGDKWLMASLLYGSGLRLMECLQLRVQDLDFAGRELLVRDGKGGKDRRTMLPQSL 188

Query: 207 RKAILE------------------------------------YYDLCPFDLNLNIQLPLF 230
             A+ E                                    +     F      +  + 
Sbjct: 189 VAALQEHLIHVKKIHDKDLNDGCGKVPLPGALDRKYPQAPWDWRWQWVFPQANRWKNKIT 248

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
                  ++  + QR +R+     G+      HT RH FATHLL  G D+R+IQ +LGH 
Sbjct: 249 GEEGRHHVHETILQRAVREAVSRAGVVKRVGCHTFRHCFATHLLEAGYDIRTIQELLGHK 308

Query: 291 RLSTTQIYTNVNSKNGG 307
            ++TT IYT+V +K G 
Sbjct: 309 DVNTTMIYTHVLNKGGK 325


>gi|20385054|gb|AAM21168.1|AF254788_3 putative integrase/recombinase Xer [Geobacillus stearothermophilus]
          Length = 304

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 61/308 (19%), Positives = 125/308 (40%), Gaps = 20/308 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              ++  L+ E+G S  T+ SY  D   F   L     + +T   IR+     I+  ++ 
Sbjct: 2   LNEYVIYLQ-EKGASPNTIISYTNDLNIFFQDLHIRPSDYVTPADIRKW----IQQMLNP 56

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS---LPRALNEKQA 134
              + +   ++ R L+ ++SF  +  K     ++ + ++++LK ++        L E++ 
Sbjct: 57  AEGKPLAISTINRRLNSLRSFYAWAVKHHKIEQNPMKDIQDLKSADEDTEKIMWLTEEEF 116

Query: 135 LTLVDNVLLHTSH----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             L+  +          + +    R+ A++YLL   GLR+ E  +L   ++  +   +RI
Sbjct: 117 EDLLQRMRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMKRIRI 176

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRY 246
            GKG K+R VP+   +   + ++             +     +F   R    +    QR 
Sbjct: 177 VGKGMKVRTVPISNILLAELEDWLKFRAEMAKKKPHVAESPYVFYSQRSPKFSVRGIQRM 236

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           I             T H  RH+F   +L     D+  ++ + GH  ++TT  Y   +  +
Sbjct: 237 IESYSL---PNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKDSYSD 293

Query: 306 GGDWMMEI 313
             D +  +
Sbjct: 294 LADAVEAL 301


>gi|253577472|ref|ZP_04854787.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843172|gb|EES71205.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 323

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 67/310 (21%), Positives = 135/310 (43%), Gaps = 21/310 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA-FIS 76
            Q+++ + +  + LS LTL+ Y+   +Q    +    +E+     I  ++  +I+  F++
Sbjct: 29  LQSFILDCKS-KNLSPLTLRFYQDSIQQ----MKVAFQEQQVPLNIYAITSRQIKNHFVA 83

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               Q   D ++   +  +K FLKYL +    T++    +  +K +  + +   ++Q   
Sbjct: 84  YLIEQGKSDNTVNGRIKAVKQFLKYLFEEGWLTQNVAEELHVVKAAKLMIQTFTKEQVAA 143

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195
           L++           +   R+  ++ LL+  G+RISE  +L   ++   +  +RI +GKG 
Sbjct: 144 LLEQ-----PDRKTFTGYRDFTMMVLLFETGMRISELCNLKIGDLFFKEQEIRITKGKGG 198

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           + R VP   +  K +  Y D+            LF  I  K ++    Q  ++       
Sbjct: 199 RARRVPFQQTSAKVVRRYLDIRGDL----ETDALFVNINNKQISTRALQEKMQVYGIAAC 254

Query: 256 LP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           +  +  + HT RH+ A   + NGGD  +++ ILGH  L     Y  + S +    + + +
Sbjct: 255 IKGVRVSPHTFRHTMAKFYILNGGDPFTLRRILGHSTLDMVDYYVELFSSD----IKQQH 310

Query: 315 DQTHPSITQK 324
            +  P    K
Sbjct: 311 KKFSPVENMK 320


>gi|325300266|ref|YP_004260183.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324319819|gb|ADY37710.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 368

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 130/292 (44%), Gaps = 30/292 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L  ++  S  T+++Y      F+ +             I +L   +I  +I   
Sbjct: 94  EGYLE-LLEQKRYSPSTIKTYRAYFSDFVEYHKGRN--------IDRLKVADINRYILYL 144

Query: 79  -RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +KI        ++ IK + + +K  K         +   K+  ++P  L++ +   +
Sbjct: 145 VNEKKISVSQQNMRINAIKFYYEQVKGGKRQYYG---GITRAKEYKTVPEVLSKNEIKRI 201

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D             + ++  ++ L+Y  GLR SE L+LTP++I  +  ++RI GKG K 
Sbjct: 202 LDQ----------LSNIKHHCMISLVYSAGLRRSELLNLTPKDINSEMMSVRIMGKGKKC 251

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGL 256
           R   L P + + +  Y+           +  LF G    +P +     + +++  +  G+
Sbjct: 252 RYSLLSPKLLEELRRYFR------EYRPKKWLFEGETPGEPYSASALVKVLKEAAQRAGI 305

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                 H LRHSFATHLL  G DL +IQ +LGH  + TT IY + ++ +   
Sbjct: 306 KHRVHVHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTTAIYLHTSNAHKAK 357


>gi|229170493|ref|ZP_04298144.1| Site-specific recombinase, phage integrase [Bacillus cereus AH621]
 gi|228612963|gb|EEK70137.1| Site-specific recombinase, phage integrase [Bacillus cereus AH621]
          Length = 352

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 58/313 (18%), Positives = 127/313 (40%), Gaps = 31/313 (9%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-- 81
           + ++  G ++ TL  Y+ + R F  FL +    +     I  ++   IR ++   + +  
Sbjct: 38  HAKVAEGRAERTLHQYKENFRYFTYFLDYKGLSR----NIDTITTDVIRNYVVFMKNEKI 93

Query: 82  ---------------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
                           +   ++   L  ++   ++L   ++   + +  ++++ +     
Sbjct: 94  QFEDHNYKPSDCKKVGLSPSTINTRLKTLRVMFRFLIDEELMESNPMKQVKDVNEPQEEI 153

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             L   +   L+D       ++  + D RN  I+ LL    LRISEALSLT  +I     
Sbjct: 154 AVLTVDELRRLLD-----VPNKRSYSDFRNYVIMNLLLDTFLRISEALSLTVNDIDLSTK 208

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            + ++    K R   ++P ++            +        +F     + ++   F++ 
Sbjct: 209 VITVRATVAKSRKARIVP-IKNTTANLLKDLIKENEEFETDHVFITNYEEQMDRNHFRKR 267

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           ++   +  G+  +   H  RH+ AT  L  GGD+R +Q +LGH  L     YT+++ +  
Sbjct: 268 LKGYAKETGITKNVHPHLFRHTGATMFLEAGGDIRHLQMLLGHADLRMVMRYTHLSKQ-- 325

Query: 307 GDWMMEIYDQTHP 319
              ++  +D+  P
Sbjct: 326 --ALINQHDKFSP 336


>gi|307322976|ref|ZP_07602243.1| integrase family protein [Sinorhizobium meliloti AK83]
 gi|306891378|gb|EFN22297.1| integrase family protein [Sinorhizobium meliloti AK83]
          Length = 292

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 74/278 (26%), Positives = 116/278 (41%), Gaps = 32/278 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRS 87
           R  S  T  SY      F              ++   L   +IR +       +K+   S
Sbjct: 15  RNFSLNTQHSYLQQVSLFARHFG---------KSPDLLGREDIRTYQVYLANEKKLAPNS 65

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           +  ++S ++ F     +R    E     +   +K   LP  L+  +    +  VL     
Sbjct: 66  IHIAISALRFFFSVTLERDWVPE----EVLLPRKPQKLPIILSPDEVQQFLGCVL----- 116

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
                D ++ AIL   Y  GLRISEA+ L   +I   +  +R+ QGKG K R V L P +
Sbjct: 117 -----DLKHHAILTTCYAAGLRISEAVHLKTTDIDSQRMVVRVEQGKGQKDRYVMLSPKL 171

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            + + +Y+ +         +  LF G R   P+      +   +      L    T H+L
Sbjct: 172 LEILRDYWRMR------RPKEWLFPGDRTGHPITRDAVGQACAKAHDLSRLSKPVTPHSL 225

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           RH+FA HLL  G D+R+IQ +LGH  L+TT  Y  + +
Sbjct: 226 RHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIAT 263


>gi|225849231|ref|YP_002729395.1| recombinase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644770|gb|ACN99820.1| recombinase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 297

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 77/315 (24%), Positives = 136/315 (43%), Gaps = 51/315 (16%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  +      S  T+++Y  D  QF+          +  + +  +S ++I  F    
Sbjct: 8   ELFLSYIAD---KSPNTIKNYSVDLNQFIKI--------VGDKEVELVSKSDIAKFRMVL 56

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           ++QK    ++ R L+ + S  +YL   ++   S I      K S  +P +L+ ++  TL+
Sbjct: 57  QSQKKKSSTIARKLATLNSLYQYLIDLELVKVSPITKSHRPKISQRIPSSLSNEEIKTLL 116

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---------------- 182
            N+           + ++ AI+ LL   GLR SE L++   NI+                
Sbjct: 117 KNID----------NLQDKAIVVLLLTTGLRSSELLNIKKSNILIERQNQTFSVDKVIEE 166

Query: 183 ----DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
               DD + +R+ GKGDK R VP+     + ++EY       +  + + P+F      P+
Sbjct: 167 GLKEDDIAYIRVVGKGDKEREVPITGKPLQILVEYLKEVNHYI--DSKTPIF------PI 218

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +     R I+ + +   +  S   H LRH+ AT  L++G +LR IQ +LGH    TT  Y
Sbjct: 219 SYHTLWRKIKDIGKK--IATSLHPHKLRHTAATVALASGAELRVIQELLGHASPITTARY 276

Query: 299 TNVNSKNGGDWMMEI 313
             V  K        +
Sbjct: 277 AKVGQKQLLKATKAL 291


>gi|258515456|ref|YP_003191678.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257779161|gb|ACV63055.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 345

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 71/308 (23%), Positives = 128/308 (41%), Gaps = 21/308 (6%)

Query: 20  NWLQ-NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            +L+  L  + G S  T++SY+     F  +L       +        +   I+ FI   
Sbjct: 18  EFLETYLPRQLGRSSKTIKSYKDSLTVFRRYLYDECHISVAAFKFADCNQKCIQEFIIYL 77

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPRALNEKQAL 135
           +       +  + L+ +KS+L +   R I  +S  L++  +   K        L E+   
Sbjct: 78  KDNNNSPGTCNQRLTALKSYLWFAADRDIAVQSVALSISKIPQCKIPKKEKETLTEEALA 137

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGK 193
            ++             +  R+  I+ LLY   +R+ E L LT +++    D   +RI GK
Sbjct: 138 AILQQP------PNTKMGLRDRVIMILLYDSAVRLDELLCLTLKDLSLRTDNPYIRISGK 191

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI---RGKPLNPGVFQRYIRQL 250
           G+K RIV + P   + + +Y  +   + +LN+   LF          ++PG  +R+I+Q 
Sbjct: 192 GNKERIVAITPKTAEHLKQYLSVYHKN-DLNMDQYLFITRIKGVTDRMSPGNVERFIKQY 250

Query: 251 RRYLG-----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
                     +PL    H  R + AT L  NG +L  +  ILGH    TT++Y   + + 
Sbjct: 251 ANSAREKCLQIPLKVYPHMFRRTRATDLYQNGVELELVSRILGHSSTETTKVYAKPSIEM 310

Query: 306 GGDWMMEI 313
               +  +
Sbjct: 311 LRKAIESV 318


>gi|325916803|ref|ZP_08179054.1| integron integrase [Xanthomonas vesicatoria ATCC 35937]
 gi|325536954|gb|EGD08699.1| integron integrase [Xanthomonas vesicatoria ATCC 35937]
          Length = 339

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 76/328 (23%), Positives = 139/328 (42%), Gaps = 64/328 (19%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            +LL + ++ L+     R  S  T Q+Y    R+F++                Q+   E+
Sbjct: 16  PKLLDQVRDRLR----VRHYSLRTEQAYLSWIRRFILASGRRHP--------AQMGQAEV 63

Query: 72  RAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
            AF+++  T   +   +  ++L+ +    + + +        + N+   K+   +P  L+
Sbjct: 64  EAFLTRLATDGQVSAGTQNQALAALLFLYREVLR---IELPWMENLVRAKRPRRIPVVLS 120

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            ++   L+             ++     +  LLYG G+R+ E L L  +++ D +  + +
Sbjct: 121 REEVARLL-----------AALEGPCWLMASLLYGSGMRLLECLRLRIKDVDDARGEIVV 169

Query: 191 Q-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI------------------------ 225
           + GKG K R VPL  S+++ +    +        ++                        
Sbjct: 170 RDGKGGKDRRVPLPRSLKEVLQRQRERALLLHAADLAAGTGRVFLPHALARKYPNAGAEP 229

Query: 226 -QLPLFRGIRG-----------KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
               LF   R              ++  V QR ++  RR+ G+    T HTLRHSFATHL
Sbjct: 230 GWQYLFPSARQSRDPRSGRVGRHHVSEEVLQRAVQMARRHAGIVKPATCHTLRHSFATHL 289

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           L  G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 290 LEAGHDIRTVQELLGHKDVATTQIYTHV 317


>gi|319655065|ref|ZP_08009133.1| hypothetical protein HMPREF1013_05756 [Bacillus sp. 2_A_57_CT2]
 gi|317393243|gb|EFV74013.1| hypothetical protein HMPREF1013_05756 [Bacillus sp. 2_A_57_CT2]
          Length = 279

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 64/289 (22%), Positives = 121/289 (41%), Gaps = 29/289 (10%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G S  TL+ Y+      + +             I  ++   I+ ++ +   + +   SL 
Sbjct: 18  GYSSQTLKVYKVQMSLLIKYFGDIK--------ITDITTESIKLYLGEVAAE-LKASSLC 68

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             +  IKS  K+ ++ K  + + +  ++  K  + +P+ L E++   L +          
Sbjct: 69  HRIRFIKSLFKWAQEEKYVSVNPVSTIKEPKPESRIPKFLTEEEIELLREACKT------ 122

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
                   A+   +Y  G RI E + L   +I   + ++ + GKG K R V         
Sbjct: 123 ----TFEKALFEFMYSTGCRIGEVVKLDRHSINMAEQSVIVFGKGKKEREVYFNTRCSIW 178

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           +  Y +    D     Q  LF  IR    ++    +  I+Q+ +  G+      H LRHS
Sbjct: 179 LKRYLEERYDD-----QQALFVTIRAPHRMSIAQMRYVIKQISKRAGINKCIHPHQLRHS 233

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           +AT L++NG  L  IQ+++GH +  TT++Y  ++    G    E+Y + 
Sbjct: 234 YATTLINNGAPLEVIQNLMGHEKSETTRVYAYLS----GHLRRELYKKF 278


>gi|296163748|ref|ZP_06846456.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886009|gb|EFG65919.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 331

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 79/322 (24%), Positives = 122/322 (37%), Gaps = 27/322 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M    LP +V       ++ + Q L  ++GLS  T+ SY    R  L F         + 
Sbjct: 1   MSAAGLPSLV-------QRFFTQRLLEQQGLSSHTVASYRDTFRLLLAFATKRIGHTPSK 53

Query: 61  QTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRK---ITTESNILNM 116
                     I  F+      +    R+    L+ + +F +++   +         IL +
Sbjct: 54  LRTEDFDALLIEEFLQHLEHGRGNSVRTRNTRLAAVHAFFRFVAVSEPALFLQCQRILAI 113

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
            + +  +     L E +A  LV            WI  R+  +L +    GLR SE  SL
Sbjct: 114 PSKRCEHGPVEFLTESEAAALV-----GAPDVRTWIGNRDRTLLLVAVQTGLRNSELTSL 168

Query: 177 TPQNIMDDQS-TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
             Q+++      +R  GKG K+R  PL P V   +  +    P +       P+F   RG
Sbjct: 169 RRQDVVLGTGAHVRCLGKGRKMRCTPLRPDVVAVMKAWLRYQPGE----PDDPVFPSSRG 224

Query: 236 KPLNPGVFQRYI-RQLRRYLG-----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
             L+    QR + R +             S T HTLRH  A  LL +G DL  I   LGH
Sbjct: 225 GHLSADALQRLVSRNVAIACHSCPSLKDKSVTPHTLRHGAAMSLLHHGVDLSVIALWLGH 284

Query: 290 FRLSTTQIYTNVNSKNGGDWMM 311
               TT IY + + +     + 
Sbjct: 285 ESSETTHIYLHADMQLKERALA 306


>gi|332971298|gb|EGK10261.1| tyrosine recombinase XerC [Desmospora sp. 8437]
          Length = 302

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 76/303 (25%), Positives = 135/303 (44%), Gaps = 27/303 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N+L +L+++ G S+ TL++YE    QF+ +    T E    + +  +   E + ++  R 
Sbjct: 15  NFLFDLKLD-GRSQKTLKTYEGVIHQFIQWFEETTGETFDPENVTPIDAAEYKQYLMNRS 73

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  ++ ++   +K +  +L K+++  ES    +R +K+    PR L+ K+   L+ 
Sbjct: 74  ----KPATVNKTRIALKRYFDWLVKQEMLKESPWSAIRPVKQGRRAPRWLDRKEQRALLR 129

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGDK 196
            V        +    R+ AI+YLL   GLR+ E   L  +++   +     +  QGKG K
Sbjct: 130 AV-------QQGRKPRDIAIVYLLLHTGLRVEELCLLRLEDVEMSERKGKVIVRQGKGGK 182

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R VPL   VRKA+  +      ++       LF   R + + P   Q  +R+  +   L
Sbjct: 183 WREVPLNRDVRKALESWL-----EVRPASSPWLFVSTRSERMTPRAVQFVVRKYGQRAEL 237

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF------RLSTTQIYTNVNSKNGGDWM 310
               T H LRH+F   L   G  L  I  + GH        ++TT IYT    ++    +
Sbjct: 238 E-HCTPHVLRHTFCHELAIKGVSLDVIAMLAGHMTADGRPNIATTAIYTTPGDQDLRRAV 296

Query: 311 MEI 313
            ++
Sbjct: 297 DQL 299


>gi|224025068|ref|ZP_03643434.1| hypothetical protein BACCOPRO_01802 [Bacteroides coprophilus DSM
           18228]
 gi|298377207|ref|ZP_06987161.1| integrase [Bacteroides sp. 3_1_19]
 gi|224018304|gb|EEF76302.1| hypothetical protein BACCOPRO_01802 [Bacteroides coprophilus DSM
           18228]
 gi|298266191|gb|EFI07850.1| integrase [Bacteroides sp. 3_1_19]
          Length = 340

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 75/319 (23%), Positives = 146/319 (45%), Gaps = 21/319 (6%)

Query: 20  NWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++L + L +E G S  T++ Y      F+ ++            +++++   +  F+   
Sbjct: 10  DYLNRYLTMECGCSYQTVKQYSATFMLFIQYMYKIELIAPEKLFLKEITKERVLGFLHWL 69

Query: 79  R-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR---ALNEKQA 134
             T+K    +    LS ++SF KYL+ R++   +    + ++K+  +  +    L  +  
Sbjct: 70  EETRKCSISTRNNRLSALRSFFKYLQYREVKGMAYWQAILSIKQKRTPFKEMSYLTTEGV 129

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-LRIQGK 193
             L++         +     R+  ++ LLY  G R+ E ++LTP+NI   ++T +++ GK
Sbjct: 130 QALLEQ-----PDLSTRKGRRDFILMGLLYDSGARVQEIINLTPENIRLGETTTVKLHGK 184

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+KIR+VPL  +  K +  Y +      +     PLF   +G+ L        +++  + 
Sbjct: 185 GNKIRVVPLSTNQVKNLRLYMEENNLFASQYRCHPLFPNPKGERLTRMAVLDIVKRHAKN 244

Query: 254 LG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                   +P + + HT RHS A H+L  G +L  I+  LGH   +TT+IY   + K   
Sbjct: 245 ARKQYLELIPSNISCHTFRHSKAMHMLEAGINLVYIRDFLGHASTTTTEIYARASEKLKE 304

Query: 308 DWMMEIYDQTHPSITQKDK 326
             +    ++  P I Q+ K
Sbjct: 305 QAL----EKLAPGIIQESK 319


>gi|229508884|ref|ZP_04398375.1| integrase [Vibrio cholerae B33]
 gi|229354159|gb|EEO19091.1| integrase [Vibrio cholerae B33]
          Length = 282

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 125/297 (42%), Gaps = 53/297 (17%)

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           +  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 1   MGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 57

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 58  LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 106

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 107 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 166

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 167 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 226

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           SFAT LL +G D+R++Q +LGH  +STT IYT+V  K GG  +    D   P  +++
Sbjct: 227 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVL-KVGGAGVRSPLDALPPLTSER 282


>gi|238924066|ref|YP_002937582.1| phage integrase family protein [Eubacterium rectale ATCC 33656]
 gi|238875741|gb|ACR75448.1| phage integrase family protein [Eubacterium rectale ATCC 33656]
 gi|291528878|emb|CBK94464.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 349

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 58/305 (19%), Positives = 118/305 (38%), Gaps = 22/305 (7%)

Query: 32  SKLTLQSYECDTRQFLIF-------LAFYTEEKITIQTIRQLSYTEIRAFISKRRT---- 80
           S  T  +Y  D + F  +       L  Y      I  + Q+S ++I  ++   +     
Sbjct: 41  SSRTKIAYAYDLQTFFEYMKSANPSLKKYDIRDYPISLLDQISPSDIEEYLFYLKYYEKD 100

Query: 81  ---QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                  +R +KR L+ +++F  +  +++    +    +   K        L+  +   L
Sbjct: 101 GVVHTNDERGIKRKLASLRTFYNFYFRKEFIDTNPASKVTLPKIHEKNIIRLDTDEVAQL 160

Query: 138 VDNVLLHTSHETKWIDAR------NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           +D V    S               + A++ LL G G+R+SE + L   ++    + +++ 
Sbjct: 161 LDEVESGDSLSKNQQRFHEKTKVRDLALMTLLLGTGIRVSECVGLDMDDVDFKNNGIKVH 220

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL 250
            KG    IV     VR A+L Y++              LF  ++ K ++    +  +++ 
Sbjct: 221 RKGGADVIVYFGDEVRDALLSYWEERSIITPAEGHANALFLSLQRKRISVRSVENLVKKY 280

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDW 309
            R +    + T H LR ++ T L    GD+  +  +LGH  ++TT+  Y           
Sbjct: 281 SRLVTTVKNITPHKLRSTYGTTLYQETGDIYLVADVLGHKDVNTTRKHYAAQEDSRRRAA 340

Query: 310 MMEIY 314
              ++
Sbjct: 341 ARVVH 345


>gi|330826868|ref|YP_004390171.1| integrase family protein [Alicycliphilus denitrificans K601]
 gi|329312240|gb|AEB86655.1| integrase family protein [Alicycliphilus denitrificans K601]
          Length = 331

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 70/304 (23%), Positives = 118/304 (38%), Gaps = 21/304 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   +  +R  S  T+ SY    R  L F       +    T  Q+  + + AF+   ++
Sbjct: 15  FTDRMMRQRQASPHTISSYRDSFRLLLRFAQRRIGVQPQRLTFEQIDASLVAAFLEDLQS 74

Query: 81  -QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI---LNMRNLKKSNSLPRALNEKQALT 136
            + I   S    L+ I+SF +Y      T  + I   L + + + + +    L  ++   
Sbjct: 75  ARGISAASRNLRLTAIRSFFRYAAFELPTHAAQIQRVLAIPSKRCTRAQIGFLAREEIDA 134

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLRIQGKGD 195
           L+     H          R+ A++ L    GLR+SE  +L   +        +R+ GKG 
Sbjct: 135 LL-----HAPDLQTRAGRRDHALMLLAVQTGLRLSELTALRRDDTELGVGAHVRVIGKGR 189

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R+ PL  +  +A+         + +L     +F   RG  L+    Q  + +      
Sbjct: 190 KERVTPLTKATAQALRALLREIDAEQDL-----VFCSARGTRLSADAVQHLVSKHVARAA 244

Query: 256 LP------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                      T H LRHS A  LL  G D   I   LGH  + TTQIY + N +     
Sbjct: 245 QSCPSLACKHVTPHVLRHSAAMELLQAGVDRTVIAMWLGHESIETTQIYLDANLQIKQAA 304

Query: 310 MMEI 313
           + ++
Sbjct: 305 LDKV 308


>gi|251789526|ref|YP_003004247.1| site-specific tyrosine recombinase XerC [Dickeya zeae Ech1591]
 gi|251789532|ref|YP_003004253.1| site-specific tyrosine recombinase XerC [Dickeya zeae Ech1591]
 gi|247538147|gb|ACT06768.1| integrase family protein [Dickeya zeae Ech1591]
 gi|247538153|gb|ACT06774.1| integrase family protein [Dickeya zeae Ech1591]
          Length = 369

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 66/309 (21%), Positives = 128/309 (41%), Gaps = 18/309 (5%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT---QK 82
             ER  S+ TL++      +F+++ A         + I        +  + + R    + 
Sbjct: 42  RRERNWSETTLKTQTHHQYRFILWAAERGLHY--GRDITLPILEHYQRHLYQYRKPNGEP 99

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVDNV 141
           +  R+ +  L  +  +  ++ +  +        +   +    LPR  L+      ++   
Sbjct: 100 LSTRTQRSQLGPLVVWFGWMTRHHLLLADPASGLVLPRLEKRLPRHILSVADVEQVL--- 156

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV 200
                  T     R+ A++ LL+  G+R  E   L   ++   +  + I QGKG K R++
Sbjct: 157 --ALPDLTTLQGIRDRALMELLWSTGIRRGEVAVLEVYSVDASRHIVTIVQGKGKKDRVI 214

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIR-GKPLNPGVFQRYIRQLRRYLGLPL 258
           P+     + +  Y       L +N   P LF  +   + L P      +    +  G+  
Sbjct: 215 PVGQRALRWLTYYLQAVRPQLLVNPHCPALFVALDGIEGLTPNGITNLVSYYIKASGIAK 274

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H  RH+ AT +L NG DLR IQ++LGH  + +TQIYT V+ +     +  ++  TH
Sbjct: 275 WGSCHLFRHAMATQMLENGADLRWIQAMLGHASVESTQIYTQVSIR----ALQAVHASTH 330

Query: 319 PSITQKDKK 327
           P+    +++
Sbjct: 331 PAERDPEEE 339


>gi|138895711|ref|YP_001126164.1| putative integrase/recombinase XerD [Geobacillus
           thermodenitrificans NG80-2]
 gi|134267224|gb|ABO67419.1| Putative integrase/recombinase XerD [Geobacillus
           thermodenitrificans NG80-2]
          Length = 304

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 60/308 (19%), Positives = 125/308 (40%), Gaps = 20/308 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              ++  L  E+G S  T+ SY  D   F   L     + +T   IR+     I+  ++ 
Sbjct: 2   LNEYVDYLR-EKGASPNTIISYTNDLNIFFNDLHIRPSDYVTSADIRKW----IQQMLNP 56

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS---LPRALNEKQA 134
              + +   ++ R L+ ++SF  +  +     ++ + ++++LK ++        L E++ 
Sbjct: 57  IEGKPLAISTINRRLNSLRSFYAWAVEHHKIEQNPMKDIQDLKSADEDYEKIMWLTEEEF 116

Query: 135 LTLVDNVLLHTSH----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             L+  +          + +    R+ A++YLL   GLR+ E  +L   ++  +   +RI
Sbjct: 117 EDLLHRMRKKPVRSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMKRIRI 176

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRY 246
            GKG K+R VP+   +   + ++ +           +     +F   R    +    QR 
Sbjct: 177 VGKGMKVRTVPISNILLAELEDWLEFRAEMAKKKPHVAASPYVFYSQRSPKFSVRGIQRM 236

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           I             T H  RH+F   +L     D+  ++ + GH  ++TT  Y   +  +
Sbjct: 237 IESYSL---PNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKDSYSD 293

Query: 306 GGDWMMEI 313
             D +  +
Sbjct: 294 LADAVEAL 301


>gi|303240629|ref|ZP_07327144.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302591866|gb|EFL61599.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 279

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 73/276 (26%), Positives = 119/276 (43%), Gaps = 32/276 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +G S+ T  +Y      F  +           ++   L   EI+A++  +  ++   RS 
Sbjct: 15  KGFSEKTKIAYLKHVELFAKYFK---------KSPELLGEEEIKAYLHHQLIERKMSRSY 65

Query: 89  K-RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++ S +K   +   KR+  +      +   K+   LP+ L+ ++   + +        
Sbjct: 66  NTQAYSALKFLYETTLKREWKS----YKIPRCKREKKLPKVLSREEVKRIFNVT------ 115

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSV 206
                + ++ AIL   Y  GLR+SE ++L   +I   +  L +QG KG K R   L    
Sbjct: 116 ----TNPKHRAILMTTYSSGLRVSEVVNLKVNDIDGKRLQLFVQGGKGQKDRYTVLSRKN 171

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            + + +Y+ L         +  LF G     PL     Q+      R  G+    + HTL
Sbjct: 172 LELLRDYWKLYH------PKTWLFPGQDINEPLCVRTVQKVFENSVRKAGITKDVSVHTL 225

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           RHSFATHLL +G D   IQ +LGH  L TT IY +V
Sbjct: 226 RHSFATHLLESGVDTFYIQKLLGHSSLKTTSIYIHV 261


>gi|296163768|ref|ZP_06846471.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295885989|gb|EFG65904.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 329

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 78/313 (24%), Positives = 115/313 (36%), Gaps = 21/313 (6%)

Query: 13  ELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           EL    Q +    L  ER  S  T+ +Y    R  L F A  T +  +         + +
Sbjct: 3   ELAITLQAFFTDRLIRERHASPCTVAAYRDTWRLLLGFCAKRTGKSPSALDFTDFDISLV 62

Query: 72  RAFISKR-RTQKIGDRSLKRSLSGIKSFLKY---LKKRKITTESNILNMRNLKKSNSLPR 127
            AF+    R +K   R+    L+ I S  +Y          T + +L +   +   ++  
Sbjct: 63  CAFLDHLERDRKNSVRTRNARLAAIHSLFRYAALRHPEHAATIARVLAILPKRFERAIVT 122

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS- 186
            L E +   L+          T W   R+ A+L +    GLRISE + L   ++      
Sbjct: 123 FLTEVEVQALL-----AAPDRTLWSGRRDYAMLLVAVQTGLRISEVIGLLWTDVHLGAGA 177

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            +  QGKG K RI PL   V K +  +   C      N    LF    G PL+    +R 
Sbjct: 178 HVACQGKGRKDRITPLTVPVVKVLRVWLAEC----EANPAARLFPTRTGTPLSRDAIERR 233

Query: 247 IRQLRRYLGL------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           I                 + T H LRH+ A  LL  G D   I   LGH  + TT IY +
Sbjct: 234 ITLHAAKASAACATLANKNVTFHVLRHTAAMRLLEAGVDPTVIALWLGHEHVDTTTIYLH 293

Query: 301 VNSKNGGDWMMEI 313
            +       +   
Sbjct: 294 AHLGIKEQALARA 306


>gi|254510200|ref|ZP_05122267.1| phage integrase [Rhodobacteraceae bacterium KLH11]
 gi|221533911|gb|EEE36899.1| phage integrase [Rhodobacteraceae bacterium KLH11]
          Length = 295

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 126/293 (43%), Gaps = 30/293 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           R+  ++++ I RGL   + QS+    + F  FL          ++   ++  E+R +   
Sbjct: 10  RERMIEDMRI-RGLGDKSQQSHIRAVKDFAAFLG---------RSPDTVTTEELRVYQLH 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +        ++ ++ F      R+         M+   +   LP  L+ ++   L
Sbjct: 60  MTDAGVTPSVYNARITALRFFFSMTCGREEMK----RYMQFRTQPRKLPAVLSAEEVSEL 115

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
           +                +  A L + YG GLR SE  +LT  +I  D+  + + QGKG K
Sbjct: 116 L--------AVAPGPGLKYRAALSISYGAGLRASEVCNLTTGDIDSDRMLIHVVQGKGRK 167

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLG 255
            R V L P +   + +Y+           +  LF G  +  P++P    R     +R  G
Sbjct: 168 DRKVMLSPDLLDLLRDYWCEA------RPEGWLFPGKPKINPISPRQLNRAFTSAKRMAG 221

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +    T HTLRHSFATHLL  G D+R IQ +LGH +L+ T  YT V +K   D
Sbjct: 222 INKPATLHTLRHSFATHLLEAGTDVRVIQVLLGHAKLTITAQYTKVATKMIRD 274


>gi|254885282|ref|ZP_05257992.1| phage integrase [Bacteroides sp. 4_3_47FAA]
 gi|254838075|gb|EET18384.1| phage integrase [Bacteroides sp. 4_3_47FAA]
          Length = 343

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 69/308 (22%), Positives = 129/308 (41%), Gaps = 25/308 (8%)

Query: 21  WL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-- 77
           +L + L + R +S  T  SY    R  + F++  T   I    I  +S   +  F+ +  
Sbjct: 19  FLGEFLTVTRNMSHNTQMSYRDTFRMLVTFVSGKTNIAIDKLNISDISKEMVLLFLDEFV 78

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKR--KITT-ESNILNMRNLKKSNSLPRALNEKQA 134
            + +     S  + L+ IKSF K++  +          I  + + K +      ++ ++ 
Sbjct: 79  EKMRNASVSSRNQRLTAIKSFAKFIAWKCPDYIDWCHQIRQIPSKKITQRQITYMDREEM 138

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----DQSTLRI 190
             L +  L + +H+      R+  I+ L+Y  G R+SE +S+   +I+        T+ +
Sbjct: 139 EALTEAPLSNRNHK---YGKRDHIIILLMYNTGARVSEVISIHVGDIVMPKKRGMGTVTL 195

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG   R  PL P     +    +    D        LF     KP+        I++ 
Sbjct: 196 HGKGRHERTCPLWPEFWDLLKPLIEGRKPD------EFLFLNRFNKPMTRYCIYTLIKKY 249

Query: 251 RRYLGLP------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             Y+            + HT+RH+ ATHLL++G D+ ++++ LGH  + TT IY  ++  
Sbjct: 250 ADYISRDYPNLRNKRPSPHTIRHTTATHLLNSGTDINTVRNWLGHASIDTTNIYAEISID 309

Query: 305 NGGDWMME 312
                + +
Sbjct: 310 QKIKALKK 317


>gi|332185243|ref|ZP_08386992.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas
           sp. S17]
 gi|332014967|gb|EGI57023.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas
           sp. S17]
          Length = 299

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 117/242 (48%), Gaps = 12/242 (4%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +   ++ R  + ++ F  +L +  +  +     +    +  SLP+ L+      L   + 
Sbjct: 62  LATTTVARKAAALRRFYAFLHEEGLRVDDPASALPRPGQRRSLPKVLSHADIDRLFAAIG 121

Query: 143 LHTS-HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
                      D R +A++ LLYG GLR SE ++L    I  D+  L ++GKG   R+VP
Sbjct: 122 ERIGVAHPAPNDLRLAALIELLYGSGLRASELVALPRNAIHPDRPFLILRGKGGAERMVP 181

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LST 260
           +    R A+  +    P D     +  LF G +   L+     + ++ L    G+P    
Sbjct: 182 ISDRARAAVAAWRVHVPTD-----KAWLFPGGKR-HLSRIRLYQLVKALAAEAGIPPDRV 235

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + H LRH+FATHLL  G DLR++Q++LGH  ++TT+IYT+V        ++E+ +  HP 
Sbjct: 236 SPHVLRHAFATHLLGGGADLRAVQAMLGHADIATTEIYTHV----EATQLVELVNARHPL 291

Query: 321 IT 322
           + 
Sbjct: 292 VD 293


>gi|291526988|emb|CBK92574.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 280

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 64/278 (23%), Positives = 120/278 (43%), Gaps = 30/278 (10%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R L   T+ +Y      FL           T + I  L+  ++  F+++++   I   + 
Sbjct: 16  RNLKDSTIHAYCTSVAHFLNH---------TAKDIDALTTDDVDIFLTEKKLSGISPETY 66

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
               SGI+ F K + K+    +     +  +K+   LP  L + +   ++D         
Sbjct: 67  NHYHSGIRFFYKKILKKNWDDDD----IPRMKRDRKLPTVLTKTEISAILDAT------- 115

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVR 207
               + ++ A++  +Y  GLR+SE   L   +I   +  + I+ GK    R   L     
Sbjct: 116 ---PNLKHKAMIATMYSGGLRVSEVTHLHYDDISRTKKNIHIRDGKSRSDRYTLLADRTL 172

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           + + EY+  C        +  LF        L      ++ R+  +  G+    + H LR
Sbjct: 173 EILTEYWFQC-----GRPRGILFPSSWTGDYLTKDSVIQFFRESAKRAGIQKHVSTHCLR 227

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           HSFA+HL  +G D++ IQ++LGH    +T++Y +V++K
Sbjct: 228 HSFASHLFESGCDVKYIQALLGHRDPKSTEVYLHVSNK 265


>gi|325297633|ref|YP_004257550.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317186|gb|ADY35077.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 368

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 130/292 (44%), Gaps = 30/292 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L  ++  S  T+++Y      F+ +             I +L   +I  +I   
Sbjct: 94  EGYLE-LLEQKRYSPSTIKTYRAYFSDFVEYHKGRN--------IDRLKVADINRYILYL 144

Query: 79  -RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +KI        ++ IK + + +K  K         +   K+  ++P  L++ +   +
Sbjct: 145 VNEKKISVSQQNMRINAIKFYYEQVKGGKRQYYG---GITRAKEYKTVPEVLSKNEIKRI 201

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D             + ++  ++ L+Y  GLR SE L+LTP++I  +  ++RI GKG K 
Sbjct: 202 LDQ----------LSNIKHHCMISLVYSAGLRRSELLNLTPKDINSEMMSVRIMGKGKKC 251

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGL 256
           R   L P + + +  Y+           +  LF G    +P +     + +++  +  G+
Sbjct: 252 RYSLLSPKLLEELRRYFR------EYRPKKWLFEGETPGQPYSASALVKVLKEAAQRAGI 305

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                 HT RHSFATHLL  G DL +IQ +LGH  + TT IY + ++ +   
Sbjct: 306 KHRVHVHTARHSFATHLLEQGTDLHTIQELLGHNDIKTTAIYLHTSNAHKAK 357


>gi|171057464|ref|YP_001789813.1| integrase family protein [Leptothrix cholodnii SP-6]
 gi|170774909|gb|ACB33048.1| integrase family protein [Leptothrix cholodnii SP-6]
          Length = 339

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 73/327 (22%), Positives = 130/327 (39%), Gaps = 21/327 (6%)

Query: 1   MEGNNLPEIVSFELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
           M   +  +          Q++  ++L  +R LS  T+ +Y      FL F      +  T
Sbjct: 1   MSSADHRKPAPPSFATLVQSFFAEHLTQQRALSPQTVAAYRDAFVLFLDFAQARLHKTPT 60

Query: 60  IQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITT---ESNILN 115
             ++  L+   I  F+    R +    RS    L+ ++SFLK+  +R +T      + L 
Sbjct: 61  TLSLADLTPALILDFLDHLERDRHNTVRSRNARLAALRSFLKFAARRDVTALQVVEHALG 120

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +   +    +   L  ++ L ++       +    W+  R+  +L LLY  G R+SE + 
Sbjct: 121 VPMKRFERPMFEFLTREEMLAVI------GAPGADWVSQRDKLLLALLYNTGARVSEVIG 174

Query: 176 LTPQNIMDD-QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +   +++    + + + GKG K R VPL  S  K I  +     F+  L     L     
Sbjct: 175 VKVGDVVLAPAACVHLHGKGRKQRSVPLWRSTVKVIRAWLR---FNPELTPTSALLPNRS 231

Query: 235 GKPLNPGVFQRYIRQLRRYLGLP------LSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           G+ +      + +    +   L        + + H LRHS A HLL +G D+  I   LG
Sbjct: 232 GQAMTRSNVTQRLALAVKAAALTTPSLAGRTISPHCLRHSTAMHLLQSGVDISVIALWLG 291

Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           H   +TT  Y   +       +  + D
Sbjct: 292 HESPATTHQYVEADLAMKEKALARLQD 318


>gi|319426956|gb|ADV55030.1| integrase family protein [Shewanella putrefaciens 200]
          Length = 324

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 75/308 (24%), Positives = 136/308 (44%), Gaps = 24/308 (7%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-------Q 81
           +G +  TL+      ++F ++          + TI Q++   +  ++            Q
Sbjct: 23  KGQAPDTLRGKRSGLKKFYLWCLPQQ-----VYTIEQITLDLLDNYMEYLNHYRKLLDHQ 77

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL-NEKQALTLVDN 140
            +G +  +  ++ IK+F++ +  + + + + +  +       +LP+AL +  +   ++  
Sbjct: 78  PLGQQQKRNLVTYIKTFVQCMYSKGLLSANTLAGIELPHSGRALPKALFSVTEIEKILAQ 137

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRI 199
            LL   H       R+ AIL + +  G+R SE + L   +I      LR+  GKG K RI
Sbjct: 138 SLLFGVH-----GLRDRAILEVFFATGIRRSELMMLDIDDIDFTAKLLRVNHGKGQKERI 192

Query: 200 VPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           VP+     + ++ Y   L P    +     LF    G  L          +  R  G+  
Sbjct: 193 VPMSERACEWLVFYLSKLRPMISFIGSGGALFLANNGTRLRANQLSEMAGRYVRLSGIKR 252

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           +   H  RH+ AT +L NG +LR +Q +LGH  + TTQIYT+V+       + E+Y  TH
Sbjct: 253 TGACHLFRHATATTMLDNGAELRHVQEMLGHASILTTQIYTHVS----RAKLTEVYGSTH 308

Query: 319 PSITQKDK 326
           PS   + +
Sbjct: 309 PSALSEQR 316


>gi|198282468|ref|YP_002218789.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198282805|ref|YP_002219126.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198284132|ref|YP_002220453.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218666115|ref|YP_002425003.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218666952|ref|YP_002425321.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218667875|ref|YP_002426786.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198246989|gb|ACH82582.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198247326|gb|ACH82919.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198248653|gb|ACH84246.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218518328|gb|ACK78914.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218519165|gb|ACK79751.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218520088|gb|ACK80674.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 332

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 69/300 (23%), Positives = 115/300 (38%), Gaps = 21/300 (7%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L  ER LS  T +SY      FL  ++    + +   T+  LS   IR F+S     
Sbjct: 16  LEYLVRERNLSINTQRSYRDMLSLFLPHVSKQLNKSVDRLTVSDLSADLIRQFLSDIEES 75

Query: 82  KIG-DRSLKRSLSGIKSFLKY---LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +     +  + L G+ +  ++        I   S I  +   K +      L + +   L
Sbjct: 76  RHCLAATRNQRLGGLHALARFIGENSPEHIEWCSQIRLIPFKKTAYPGITYLEKPEMDAL 135

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++     +         R+ A+L  LY  G R SEA  L   ++        I GKG+K 
Sbjct: 136 LE-----SPDRQTPQGQRDYALLLFLYNTGARASEAADLRIVDVDWHAQCAHIIGKGNKR 190

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL- 256
           R  PL P+    +         D        +F    G+P+        + +      + 
Sbjct: 191 RTCPLWPTTLDQLRALATQRGLDQR------VFLNRNGQPITRFGIHTMVERHAARACVQ 244

Query: 257 -----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
                    + H +RHS ATHLL  G D+ ++++ LGH  L+TT IY   + +     + 
Sbjct: 245 VPSMSTKQVSPHVIRHSTATHLLRAGVDINTVRAWLGHVSLTTTNIYAETDLETKTRALA 304


>gi|254462175|ref|ZP_05075591.1| phage integrase [Rhodobacterales bacterium HTCC2083]
 gi|206678764|gb|EDZ43251.1| phage integrase [Rhodobacteraceae bacterium HTCC2083]
          Length = 295

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 77/288 (26%), Positives = 123/288 (42%), Gaps = 30/288 (10%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           ++++ I RG+S  T Q++    R F  F+          ++    +  E+RA+       
Sbjct: 14  IEDMRI-RGMSPKTQQTHIRAVRYFSEFIG---------RSPDTATPDELRAYQLHMTDA 63

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +        +  ++ F      R+         M+  +K+  LP  L+ ++   L+  V
Sbjct: 64  GVSTGVFNARIVSLRFFFGMTCGREEMK----RFMQFRRKAKKLPVVLSVEEVGDLLAAV 119

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV 200
                        +  A L + YG GLR SE  +L   +I  D+  + + +GK DK R  
Sbjct: 120 --------PGPGLKYRAALGISYGAGLRASEVCNLKISDIDSDRMLIHVDEGKNDKDRKA 171

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLGLPLS 259
            L P     + +Y+           +  LF G  +   L+P    R     +   G+   
Sbjct: 172 MLSPGSLDLLRDYWREA------RPEGWLFPGKPKIMALSPRQLNRAFTSAKHMAGINKP 225

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            T HTLRHSFATHLL  G D+R IQ +LGH +LSTT  YT+V +K   
Sbjct: 226 ATLHTLRHSFATHLLEAGTDVRVIQVLLGHSKLSTTARYTHVATKTIR 273


>gi|218134658|ref|ZP_03463462.1| hypothetical protein BACPEC_02561 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990043|gb|EEC56054.1| hypothetical protein BACPEC_02561 [Bacteroides pectinophilus ATCC
           43243]
          Length = 282

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 65/285 (22%), Positives = 126/285 (44%), Gaps = 30/285 (10%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           ++N   +R L + T+Q Y  D   FL ++          + +  L+  +  +F++ +R +
Sbjct: 9   IRNEAEKRNLRERTIQLYCSDVSYFLRWIG---------KNVSDLTLEDAESFLTAKRLE 59

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                +     S IK   K +   KI  + +   +  +K+  +LP  L+  +   ++D  
Sbjct: 60  GRSPETHNHYRSAIKFLYKKVL--KIVWDDDT--VPAMKRERNLPAVLSRDEINAIIDAT 115

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV 200
                      + ++ AI+  +Y  GLR+SE + L   +I     T+ ++  KG   R  
Sbjct: 116 ----------PNLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGRIDRYT 165

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRRYLGLPLS 259
            L       + EY+  C        +  LF        L+     ++ ++  +  G+   
Sbjct: 166 ILSQKNLDLLTEYWFKC-----GRPKDILFPSSWSGGYLDIASVNQFFKKSAKLAGINRH 220

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            ++H  RHSFA+HL  +G D++ IQS+LGH    +T +Y +V++K
Sbjct: 221 VSSHACRHSFASHLFESGTDIKYIQSLLGHVDPRSTDVYLHVSNK 265


>gi|291524801|emb|CBK90388.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 349

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 57/305 (18%), Positives = 118/305 (38%), Gaps = 22/305 (7%)

Query: 32  SKLTLQSYECDTRQFLIFLA-------FYTEEKITIQTIRQLSYTEIRAFISKRRT---- 80
           S  T  +Y  D + F  ++         Y      I  + Q+S ++I  ++   +     
Sbjct: 41  SSRTKIAYAYDLQTFFEYMKSANPSLRKYDIRDYPISLLDQISPSDIEEYLFYLKYYEKD 100

Query: 81  ---QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                  +R +KR L+ +++F  +  +++    +    +   K        L+  +   L
Sbjct: 101 GVVHTNDERGIKRKLASLRTFYNFYFRKEFIDTNPASKVTLPKIHEKNIIRLDTDEVAQL 160

Query: 138 VDNVLLHTSHETKWIDAR------NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           +D V    S               + A++ LL G G+R+SE + L   ++    + +++ 
Sbjct: 161 LDEVESGDSLSKNQQRFHEKTKVRDLALMTLLLGTGIRVSECVGLDMDDVDFKNNGIKVH 220

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL 250
            KG    IV     VR A+L Y++              LF  ++ K ++    +  +++ 
Sbjct: 221 RKGGADVIVYFGDEVRDALLSYWEERSIITPAEGHANALFLSLQRKRISVRSVENLVKKY 280

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDW 309
            R +    + T H LR ++ T L    GD+  +  +LGH  ++TT+  Y           
Sbjct: 281 SRLVTTVKNITPHKLRSTYGTTLYQETGDIYLVADVLGHKDVNTTRKHYAAQEDSRRRAA 340

Query: 310 MMEIY 314
              ++
Sbjct: 341 ARVVH 345


>gi|291557595|emb|CBL34712.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a]
          Length = 282

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 65/285 (22%), Positives = 126/285 (44%), Gaps = 30/285 (10%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           ++N   +R L + T+Q Y  D   FL ++          + +  L+  +  +F++ +R +
Sbjct: 9   IRNEAEKRNLRERTIQLYCSDVSYFLRWIG---------KNVSDLTLEDAESFLTAKRLE 59

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                +     S IK   K +   KI  + +   +  +K+  +LP  L+  +   ++D  
Sbjct: 60  GRSPETHNHYRSAIKFLYKKVL--KILWDDDT--VPAMKRERNLPVVLSRDEINAIIDAT 115

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV 200
                      + ++ AI+  +Y  GLR+SE + L   +I     T+ ++  KG   R  
Sbjct: 116 ----------PNLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGRIDRYT 165

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRRYLGLPLS 259
            L       + EY+  C        +  LF        L+     ++ ++  +  G+   
Sbjct: 166 ILSQKNLDLLTEYWYKC-----GRPKDILFPSSWSGGYLDIASVNQFFKKSAKLAGINRH 220

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            ++H  RHSFA+HL  +G D++ IQS+LGH    +T +Y +V++K
Sbjct: 221 VSSHACRHSFASHLFESGTDIKYIQSLLGHVDPRSTDVYLHVSNK 265


>gi|328947550|ref|YP_004364887.1| integron integrase [Treponema succinifaciens DSM 2489]
 gi|328447874|gb|AEB13590.1| integron integrase [Treponema succinifaciens DSM 2489]
          Length = 410

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 80/351 (22%), Positives = 144/351 (41%), Gaps = 61/351 (17%)

Query: 2   EGNNLPEIVSFELLKERQN----WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK 57
           E  N P   + EL+ +        L+ +   R  SK T+  Y+   + FL   +      
Sbjct: 73  ENQNYPRNTNDELINDYVQNETKKLEEVLKVRHYSKCTIDRYKKWVQLFLTQNSASESNC 132

Query: 58  ITIQTIRQLSYTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
                  Q +  EI  ++      + +   +  ++L+ +  + +++K   +     + N+
Sbjct: 133 NN-----QSAQKEINEYLKFLALKKNVSASTQNQALAALLFYYRFVKNEPMEK---LTNV 184

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
            + KK   +P   + ++   ++ N           +      I  LLYG GLR++EALSL
Sbjct: 185 VHAKKKTRIPVVFSRQEVSKIIGN-----------LTGTKKLIAKLLYGTGLRLNEALSL 233

Query: 177 TPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAIL------------------------ 211
              ++  D++ + ++ GKGDK R V +  ++   +                         
Sbjct: 234 RILDLDFDRNEIIVRHGKGDKDRHVMIPRTLICELKSHIENLRKIHEEDLKAGFGSVKLP 293

Query: 212 ------------EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
                       E+     F      + P         L+  + QR ++Q     G+  +
Sbjct: 294 QALSDKYQGGSKEFKWQWLFPQKNRWKNPQTGEEGRWHLDESLMQRAVKQAILEAGINKN 353

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            + HT RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V ++  G  +
Sbjct: 354 ASCHTFRHSFATHLLENGYDIRTIQELLGHSDVSTTMIYTHVLNRGAGGVI 404


>gi|238916936|ref|YP_002930453.1| integrase/recombinase XerC [Eubacterium eligens ATCC 27750]
 gi|238872296|gb|ACR72006.1| integrase/recombinase XerC [Eubacterium eligens ATCC 27750]
          Length = 354

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 60/312 (19%), Positives = 122/312 (39%), Gaps = 24/312 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFL-------AFYTEEKITIQTIRQLSYTEIR 72
            +  +LE  +     T  +Y  D + F  FL       + Y  +      + ++  T+I 
Sbjct: 36  QYFDSLEFNKQ--PRTKIAYAMDIKGFFEFLIECIPKFSSYAMKDFKPSDLEKIDGTDIT 93

Query: 73  AFISKRRTQKIGDRSL-------KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
            ++   +  K   R +       KR L  ++ F +Y  + +I + +  + +   K     
Sbjct: 94  RYLRHVKLYKKNGRDITNSESAAKRKLCALRRFYEYYCRYEIISLNPTIKVDMPKIHEKA 153

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDAR------NSAILYLLYGCGLRISEALSLTPQ 179
              +   +    +DNV          + +       + A+L L+ G G+R+SE + L   
Sbjct: 154 IIRMEPNEVAEFLDNVESGNKLTKTQLQSHEKLKTRDLALLTLMLGTGIRVSECVGLDIN 213

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPL 238
           ++  D   +R+  KG     V     VR+A+L Y +       +   +  LF   + K L
Sbjct: 214 DVDFDNDRIRVIRKGGSESFVYFGDEVREALLNYLEERKNLTPDEGHENALFISAKKKRL 273

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-I 297
                +  +++  + +      T H LR ++ T+L     D+  +  +LGH  ++TT+  
Sbjct: 274 CVRSVELLVKKYAQTVTTVKHITPHKLRSTYGTNLYQESQDIYLVADVLGHKDVNTTRKH 333

Query: 298 YTNVNSKNGGDW 309
           Y  +  +N    
Sbjct: 334 YAEIVEENKRSA 345


>gi|71909039|ref|YP_286626.1| integron integrase [Dechloromonas aromatica RCB]
 gi|71848660|gb|AAZ48156.1| Integron integrase [Dechloromonas aromatica RCB]
          Length = 327

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 70/335 (20%), Positives = 135/335 (40%), Gaps = 64/335 (19%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           S +LL + ++ L+     +  S  T   Y    R+F++F              R++   E
Sbjct: 11  SPKLLDQVRDKLR----LKHYSIRTETQYVQWIRRFILFHDKRHP--------REMGAGE 58

Query: 71  IRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           + AF++    +  +   +  ++LS +    + +          +  +   K+   LP  L
Sbjct: 59  VEAFLTHLAVEGRVAASTQNQALSALLFLYRDVLG---IQLPWLDQVVRAKQPQRLPVVL 115

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
             ++   L+D +              +  +  LLYG G+R+ E + L  +++  +++ + 
Sbjct: 116 TRQEIAALLDRM-----------SGLHGLMARLLYGTGMRLMECVRLRVKDVDFERAEIV 164

Query: 190 IQ-GKGDKIRIVPLLPSVRKAIL------------------------------------E 212
           ++ GKG K R+  L  ++ + +                                     +
Sbjct: 165 VRDGKGAKDRVTMLPRTLIEPLQDHLRWRRTCYEDDLARGKASVYLPNALDRKYPNAETD 224

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +     F        P     R   L+    QR +++  +  G+    T HT RHSFATH
Sbjct: 225 WAWQYIFPAAGYSIDPRSGVERRHHLDEKALQRAVKKALQASGIAKLATPHTFRHSFATH 284

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           LL +G D+R++Q +LGH  ++TT IYT+V +K G 
Sbjct: 285 LLQSGYDIRTVQELLGHADVTTTMIYTHVLNKGGR 319


>gi|332308719|ref|YP_004436569.1| integrase family protein [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332176048|gb|AEE25301.1| integrase family protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 286

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 122/289 (42%), Gaps = 30/289 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ  ++++ + R LS  T   Y    ++   +L          ++    +  E+R F   
Sbjct: 12  RQRMIEDMTM-RRLSPKTQIGYIRGVKKLAAYLK---------RSPEDATAEELRQFQLA 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q   + ++  +LSG+K        + +     +L +  +     LP  L++++   L
Sbjct: 62  LAEQGASNITINATLSGLKFLF----HKTLNLLDVMLKVSTVPVPRKLPTVLSKEEVKQL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
           +D               +  A   + YG GLRI E ++L   +I   +  LRI QGKG K
Sbjct: 118 IDAT----------HTIKYKAAFSVAYGAGLRIGEVVALKVTDIDSSRMLLRIEQGKGKK 167

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLG 255
            R+  L       + ++Y        +     LF G     P+      R  +      G
Sbjct: 168 DRMAML----LTTLCQWYKHAKAHHLMLNGGWLFPGQNPLNPIGTRQLSRAWKSACIDAG 223

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           L    + HTLRHSFA HLL +  D+R IQ++LGH +L TT +Y  V SK
Sbjct: 224 LTKKVSMHTLRHSFAMHLLEDKVDIRVIQTLLGHSKLETTALYAQVASK 272


>gi|269126616|ref|YP_003299986.1| integrase family protein [Thermomonospora curvata DSM 43183]
 gi|268311574|gb|ACY97948.1| integrase family protein [Thermomonospora curvata DSM 43183]
          Length = 338

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 79/337 (23%), Positives = 132/337 (39%), Gaps = 22/337 (6%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIE-RGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
           M+G  L ++         + WL +     RG+S  T  +Y  D   +   LA +      
Sbjct: 1   MDGPTLQDLA--------ERWLDHKRASGRGMSDNTEAAYRADLNAWGRALADHHAIDTP 52

Query: 60  IQT--IRQLSYTEIRAFISKRR-----TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
            QT  +  L    + A            +     +  R +S ++ +  +L +    T   
Sbjct: 53  DQTRPLEALHTGHLTAEALTAAAASFYREGKTAATRSRRISALRGWCAWLVRTGHLTADP 112

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
             ++   +    LP AL + Q   +V                 + A+L L  G G R  E
Sbjct: 113 TTDLETPRLPRRLPVALTDAQLAAIVQAASTPWQGARAQWVRLDRALLALFAGAGARTGE 172

Query: 173 ALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLP 228
            ++L   +++   D    LR++GKG   R VPL     + + +Y D     L   + + P
Sbjct: 173 VVALRVGDVICEEDGGGLLRLRGKGGAHRNVPLHADAMQPVTDYLDERRALLGPFDAEDP 232

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           L     GK +  G+ +  + Q  R   +  P    AH  RH++A  +L NG  L  +Q++
Sbjct: 233 LLVARNGKAITTGMIEYRVDQWFRRAAVRRPEGELAHVFRHTYAVGVLQNGASLNELQAV 292

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
           LGH  L+TT IYT V ++   D         H   T+
Sbjct: 293 LGHQNLATTSIYTKVAAEGLKDVARVAPVLRHLRATR 329


>gi|62768242|gb|AAY00030.1| putative integrase/recombinase [uncultured bacterial symbiont of
           Discodermia dissoluta]
          Length = 339

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 72/320 (22%), Positives = 121/320 (37%), Gaps = 19/320 (5%)

Query: 6   LPEIVSFELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           +PE     L +  Q +  Q+L + RG S+ T+ +Y    +  L FL  + +         
Sbjct: 1   MPEAGPNSLGRALQAFFGQHLPLVRGASRHTVLAYRDGFKLLLRFLEQHLQRPSAALDFP 60

Query: 65  QLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKY---LKKRKITTESNILNMRNLK 120
            L    + AF+    TQ      +    L+ + SF +Y        +     IL +   +
Sbjct: 61  DLEPDNLLAFLDHAETQRGNTIATRNARLTAVHSFARYAATRHPEHLALCQRILAIPFKR 120

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                   L   +A  L     L           R+ A+L  +Y  G R+ E L L P +
Sbjct: 121 GPERSIEYLEADEAQAL-----LAAPDCGTPSGRRDRALLLAMYNTGARVQEILDLRPCD 175

Query: 181 IMDDQST-LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           +  ++     ++GKG K RI PL+     A+          L  + + PLFR   G PL+
Sbjct: 176 LQLERPFQALLRGKGRKERICPLMKETAVALRALLAERGVPL--DSEQPLFRNRHGAPLH 233

Query: 240 PGVFQRYIRQLRRYLGLP------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
               +  + +                   H +RH+ A+H L  G D+ +I  +LGH  + 
Sbjct: 234 RSGVRYILHKHCCQAATHAPTLKRKRIHPHVMRHTMASHHLQAGVDIVTISHLLGHASVE 293

Query: 294 TTQIYTNVNSKNGGDWMMEI 313
           T   Y  VN +     + + 
Sbjct: 294 TANRYAVVNLETKRAAVAKA 313


>gi|229824886|ref|ZP_04450955.1| hypothetical protein GCWU000182_00235 [Abiotrophia defectiva ATCC
           49176]
 gi|229790889|gb|EEP27003.1| hypothetical protein GCWU000182_00235 [Abiotrophia defectiva ATCC
           49176]
          Length = 349

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 57/300 (19%), Positives = 113/300 (37%), Gaps = 22/300 (7%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTE-------EKITIQTIRQLSYTEIRAFISKRR----- 79
           S  T  +Y  D   F  +L            + I I  +  L   +I  +IS  R     
Sbjct: 41  SSRTRIAYAYDLIVFFNWLKEANPSLSGTDIQNIDISILDNLKAVDIEEYISYIRYYIKD 100

Query: 80  --TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                  ++ +KR L  +++F KY  K++    +  + +   K  +     L  ++   L
Sbjct: 101 GEGHGNKEKGIKRKLVALRTFYKYYYKKERIKSNPSVLVDTPKLHDKAIVRLEPEEVANL 160

Query: 138 VDNVLL------HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           +DN+          +   +    R+ AI+ LL   G+R+SE + +   +I    + +++ 
Sbjct: 161 LDNIESGDGLSSSQAKYHEKTSVRDLAIVTLLLSTGIRVSECVGIDLNDIDFKTNGIKVH 220

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            KG    +V        A+  Y       +     +   F  I+ K ++    +  +++ 
Sbjct: 221 RKGGYETVVYFGDEAETALKNYLKERQTIEAADGHKNAFFLSIQKKRISVRAVEILVKKY 280

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDW 309
              +      T H LR ++ T L    GD+  +  +LGH  ++TT + Y  +        
Sbjct: 281 SSLVTTIKKITPHKLRSTYGTSLYRETGDIYLVADVLGHKDVNTTKKHYAAIEEDRRRKA 340


>gi|86139634|ref|ZP_01058202.1| integrase/recombinase [Roseobacter sp. MED193]
 gi|85823817|gb|EAQ44024.1| integrase/recombinase [Roseobacter sp. MED193]
          Length = 306

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 122/293 (41%), Gaps = 30/293 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ  + ++ I RG+ +   +S+    + F  FL          +     +  ++RA+   
Sbjct: 21  RQRMIDDMRI-RGMGEKAQKSHIRAIKDFAAFLG---------RPPDTATPEDLRAYQLH 70

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +   +    +  ++ F      R+         M+   +   LP   + ++   +
Sbjct: 71  MTDSGVTPSTFNVRIVALRFFFSMTCGREEMK----RYMQFRTEPRKLPVVFSVEEVSDI 126

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDK 196
           +                +  A L + YG GLR SE  +L   +I  D+  + ++ GKG K
Sbjct: 127 LMA--------APGPGLKYRAALSISYGAGLRASEVCNLKISDIDSDRMLIHVELGKGQK 178

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLG 255
            R V L P + + +  ++           +  LF G  +  P++P    R     +   G
Sbjct: 179 DRKVMLSPGLLELLRAWWREA------RPEGWLFPGKPKINPISPRQLSRAFTSAKHMAG 232

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +    T HTLRHSFATHLL    D+R IQ +LGH +L+TT  YT+V +K   D
Sbjct: 233 VKKPATLHTLRHSFATHLLEANTDVRVIQVLLGHAKLTTTARYTHVATKTIRD 285


>gi|315608575|ref|ZP_07883559.1| integrase/recombinase [Prevotella buccae ATCC 33574]
 gi|315249746|gb|EFU29751.1| integrase/recombinase [Prevotella buccae ATCC 33574]
          Length = 343

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 82/323 (25%), Positives = 136/323 (42%), Gaps = 11/323 (3%)

Query: 13  ELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           +  +    +L   L  ERG+S  TL+SY       L ++    +       ++ L+    
Sbjct: 6   DFARHLTIFLSDYLMKERGVSHHTLRSYAYTFDLMLDYMLEVKKIPAERIELKHLTRDCT 65

Query: 72  RAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
             F+   +T+ K  D +    L+ I +F KYL+   I        +  +K  + +   ++
Sbjct: 66  TGFLDWLQTERKCTDNTRNARLAAIHAFCKYLQYEDIKRIGCWQQIMTIKAKHKVSGTIS 125

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTLR 189
                 +    LL           R+ AIL LLY  G R+ E ++LTP ++  +  + + 
Sbjct: 126 SLSIEAM--KTLLAEIPTDTMQGRRHLAILSLLYESGARVQELINLTPNDLSLELPAYVT 183

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG K R+VPL   +   +  Y      DL    +  LF   RG  L+       I  
Sbjct: 184 LFGKGRKKRVVPLQKRLVSIMRLYLAEHKLDLPGREKRHLFYNNRGAKLSNSGIAHIITL 243

Query: 250 LRRYLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
               +       LP   + H+ RHS A HLL  G +L  I+ ILGH  + TT+IY + +S
Sbjct: 244 YANDVRVKHPGLLPDKISPHSFRHSKAMHLLQAGVNLVYIRDILGHASIKTTEIYAHADS 303

Query: 304 KNGGDWMMEIYDQTHPSITQKDK 326
           K   D + + Y    P   ++ +
Sbjct: 304 KQKRDALEKAYANITPERPERGE 326


>gi|238923573|ref|YP_002937089.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|238925721|ref|YP_002939238.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|238875248|gb|ACR74955.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|238877397|gb|ACR77104.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|291524021|emb|CBK89608.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 282

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 64/285 (22%), Positives = 124/285 (43%), Gaps = 30/285 (10%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           ++N   +R L + T+Q Y  D   FL ++          + +  L+  +  +F++ +R +
Sbjct: 9   IRNEAEKRNLRERTIQLYCSDVSYFLRWIG---------KNVSDLTLEDAESFLTAKRLE 59

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                +     S IK   K + K     +     +  +K+  +LP  L+  +   ++D  
Sbjct: 60  GRSPETHNHYRSAIKFLYKKVLKTVWDDD----TVPAMKRERNLPAVLSRDEINAIIDAT 115

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV 200
                      + ++ AI+  +Y  GLR+SE + L   +I     T+ ++  KG   R  
Sbjct: 116 ----------PNLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGRIDRYT 165

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRRYLGLPLS 259
            L       + EY+  C        +  LF        L+     ++ ++  +  G+   
Sbjct: 166 ILSQKNLDLLTEYWYKC-----GRPKDILFPSSWTGGYLDITGVNQFFKKSAKLAGITRH 220

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            ++H  RHSFA+HL  +G D++ IQS+LGH    +T +Y +V++K
Sbjct: 221 VSSHACRHSFASHLFESGTDIKYIQSLLGHVDPRSTDVYLHVSNK 265


>gi|148642488|ref|YP_001273001.1| phage integrase family integrase/recombinase [Methanobrevibacter
           smithii ATCC 35061]
 gi|148551505|gb|ABQ86633.1| integrase-recombinase protein, phage integrase family
           [Methanobrevibacter smithii ATCC 35061]
          Length = 302

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 72/289 (24%), Positives = 134/289 (46%), Gaps = 22/289 (7%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K +++++ +L+     S+ T+++Y     +F  +L          + I+  +     ++I
Sbjct: 28  KIKESYITSLKN-NNYSQNTIKTYSSIIHKFTTYLKNQIAIYNEKEFIKYFN-----SYI 81

Query: 76  SKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
              +  + +    +      +K FL++     + +      +   K+  S P  L +K+ 
Sbjct: 82  LYLKQVKNVSQNYIYLVTVVVKKFLEFNNIHFLDS------ITTPKRIKSPPNFLTQKEV 135

Query: 135 LTLVDNVLLHTSHETKW---IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
             L+D++    + ++ +      R+  I+ LLY  GLR+SE ++L+  N+  +   L I 
Sbjct: 136 KQLLDSITWDENSDSDFRIITKLRDKLIVTLLYSSGLRVSELINLSVDNVNFEGKQLSIV 195

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GK +  R++ L  S ++ I +Y +      N      L     G PL P   Q  I++  
Sbjct: 196 GKNNS-RVILLDESTKQLIQKYLEKRTQKSN-----YLVVNKSGNPLTPRYVQLMIKKYG 249

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              G+    T H LRHS+ATHL   G +++ IQ +LGH  LSTTQIY+ 
Sbjct: 250 NESGIEKKITPHILRHSYATHLFEQGVNIKIIQQLLGHSNLSTTQIYSQ 298


>gi|189425632|ref|YP_001952809.1| integrase [Geobacter lovleyi SZ]
 gi|189421891|gb|ACD96289.1| integron integrase [Geobacter lovleyi SZ]
          Length = 453

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 75/309 (24%), Positives = 127/309 (41%), Gaps = 59/309 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           R  S+ TL++Y   +R+F  FL   + +        +L+  +++A+++    T K+   +
Sbjct: 151 RHYSRKTLKTYANWSRKFQYFLKNRSPQ--------ELTGDDVKAYLTHLAVTCKVASTT 202

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++ + +    ++  KR+      + ++   KKS  +P  L+ ++   ++ +       
Sbjct: 203 QNQAFNSLLFLYRHGLKREFGE---LRDVPRAKKSLYIPTVLSREEIDAILAH------- 252

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
               +      ++ LL+GCGLR  E L L  ++   D   L I GKG K R VP+  ++ 
Sbjct: 253 ----LAYPFDLVVKLLFGCGLRQFECLQLRVRDFNFDAGKLTIHGKGKKDRTVPIPEAIL 308

Query: 208 ------------------------------------KAILEYYDLCPFDLNLNIQLPLFR 231
                                               KA  E+     F            
Sbjct: 309 PELKRQIKLVGELHERDLAVGYDGVFLDDSVEKKYPKAPKEFLHQWFFPQKNLTLAAETG 368

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
             R   L+    Q  +    R   +P   T+HT RHSFATHLL  G D+R IQ++LGH  
Sbjct: 369 QQRRWHLHESELQEALYPAVRKAKIPKRVTSHTFRHSFATHLLQAGYDIRVIQTLLGHSS 428

Query: 292 LSTTQIYTN 300
           L TT IYT+
Sbjct: 429 LKTTMIYTH 437


>gi|296163718|ref|ZP_06846432.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886039|gb|EFG65943.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 335

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 66/318 (20%), Positives = 120/318 (37%), Gaps = 22/318 (6%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P +    L+++   ++  L  +R +S  T+ SY    R    F      +      +   
Sbjct: 6   PAVRFSTLIQQF--FMDRLIEQRNVSPRTVASYRDTFRLLFSFAENDLNKPPHKLRLVDF 63

Query: 67  SYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTES---NILNMRNLKKS 122
           +   I AF+    T +    RS    L+ I+SF  Y   ++ +       +L +   +  
Sbjct: 64  NAELILAFLKYLETTRHNAIRSRNARLAAIRSFAHYAALQEPSALPGLQRVLAIPMKRFD 123

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             +   L+ ++        +L       W   R+  +L  LY  G R+SE +++  ++++
Sbjct: 124 RPMVGFLSREEM-----QCILAAPAANSWCGQRDQVMLATLYNTGARVSELIAMRVRDVV 178

Query: 183 DDQSTL-RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
            D+     + GKG K R VPL     K I  +       +N +    LF    G  +   
Sbjct: 179 LDRGACANLHGKGRKERTVPLWAGTAKQIRRWLH----QINPDPDQWLFPNRAGGQMTRS 234

Query: 242 VFQRYIRQLRRYLGL------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                ++       +        S T H +RH+ A H+L  G D+  I   LGH   +TT
Sbjct: 235 GVTDRLKVAATGASIRCPQLKTRSVTPHIVRHATAMHMLQAGVDVTLIALWLGHESAATT 294

Query: 296 QIYTNVNSKNGGDWMMEI 313
            +Y   +       +  I
Sbjct: 295 HMYIEADLAMKQRALNAI 312


>gi|317051491|ref|YP_004112607.1| integrase family protein [Desulfurispirillum indicum S5]
 gi|316946575|gb|ADU66051.1| integrase family protein [Desulfurispirillum indicum S5]
          Length = 330

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 141/296 (47%), Gaps = 17/296 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++ + L+ E GLS+ T+  Y  + R+FL FL    +E++T++T       E+R +++  
Sbjct: 44  KHYQRYLKYECGLSQQTIDRYLFEMRRFLEFLQ---QEELTVET---AGPRELRMYLTH- 96

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNEKQALT 136
           +       +    L  +++   +L+      E+   ++++ K +    +P  L + +   
Sbjct: 97  KAMGKSKSTYANVLCYVRAIFNWLQYEGFLEENPARDLKSPKGAYKNEMPVFLKDDEQKR 156

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L   +      E  + + R++A++  +   G+R SE   LT +N        +I  KG K
Sbjct: 157 LRAYL---NGLERNFHNDRDTAVMLCVLYTGMRASEICQLTRRNFHRQGKAFQITRKGQK 213

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            +I+P+  ++ + +  Y+      ++ +     F    GKPL P +  +      +  G+
Sbjct: 214 EQILPIADALMEILQFYWYEHMDSIDSDF---FFCRTNGKPLTPYIIWQRTSLHIKAAGI 270

Query: 257 --PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
             P    AH LRH+FAT+L+  G +L  IQ +LGH  ++ T+IYT+ + +     +
Sbjct: 271 DLPRKRGAHLLRHTFATNLVRKGVNLIEIQRLLGHSHVAVTEIYTHTSPEGLRSAV 326


>gi|169636475|ref|YP_001716016.1| putative integrase/recombinase XerD [Geobacillus
           stearothermophilus]
 gi|169403015|emb|CAP08226.1| putative integrase/recombinase XerD [Geobacillus
           stearothermophilus]
          Length = 304

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 61/308 (19%), Positives = 126/308 (40%), Gaps = 20/308 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              ++  L+ E+G S  T+ SY  D   F   L     + +T+  IR+     I+  ++ 
Sbjct: 2   LNEYVTYLQ-EKGASPNTIISYTNDLNIFFNDLHIRPGDYVTMADIRKW----IQQMLNP 56

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK---KSNSLPRALNEKQA 134
              + +   ++ R L+ ++SF  +  +     ++ + ++++LK   + N     L E++ 
Sbjct: 57  AEGKPLAISTINRRLNALRSFYAWAVEHYKLEQNPMKDIQDLKSADEDNEKIMWLTEEEF 116

Query: 135 LTLVDNVLLHTSH----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             L+  +          + +    R+ A++YLL   GLR+ E  +L   ++  +   +RI
Sbjct: 117 EDLLHRMRKKPVRSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMKRIRI 176

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRY 246
            GKG K+R VP+   +   + ++             +     +F   R    +    QR 
Sbjct: 177 VGKGMKVRTVPISNILLAELEDWLKFRAEMAKKKSHVAESPYVFYSQRSPKFSVRGIQRM 236

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           I             T H  RH+F   +L     D+  ++ + GH  ++TT  Y   +  +
Sbjct: 237 IESYSL---PNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKDSYSD 293

Query: 306 GGDWMMEI 313
             D +  +
Sbjct: 294 LADAVEAL 301


>gi|255692176|ref|ZP_05415851.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
 gi|299146444|ref|ZP_07039512.1| putative tyrosine recombinase [Bacteroides sp. 3_1_23]
 gi|260622041|gb|EEX44912.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
 gi|298516935|gb|EFI40816.1| putative tyrosine recombinase [Bacteroides sp. 3_1_23]
          Length = 383

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 134/292 (45%), Gaps = 30/292 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L  ++  S  T+++Y+     F+ +   +         +  L+  +I +++   
Sbjct: 109 KGYLE-LLEQKRYSLSTIKAYKIYFSDFMEYHKGH--------DLDLLTVEDINSYMLHM 159

Query: 79  -RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            + + I        ++ IK + +   ++          +   K+  +LP  L+ ++  ++
Sbjct: 160 VKEKHISATQQNMRINAIKFYYE-KVRKGRRQYYG--GIARAKEYKALPEVLSREEMKSI 216

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                       +  + ++  ++ L+Y  GLR SE L+LTP++I+ ++  +RI GKG K 
Sbjct: 217 F----------AQLPNRKHRCMISLIYSAGLRRSELLNLTPKDIISERMLIRIAGKGKKC 266

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGL 256
           R   L   +   +  YY           Q  LF G   G+  +P    + +++  R  G+
Sbjct: 267 RYSLLSEKLLNELRAYYR------EYRPQKWLFEGEQSGEQYSPSALVKVLKEAARKAGI 320

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                 H LRH+FATHLL  G DLR+IQ ++GH  + TT IY +V++ +   
Sbjct: 321 KHRVHLHMLRHTFATHLLEQGTDLRTIQELMGHTDIKTTAIYLHVSNAHKAK 372


>gi|108804268|ref|YP_644205.1| phage integrase [Rubrobacter xylanophilus DSM 9941]
 gi|108765511|gb|ABG04393.1| phage integrase [Rubrobacter xylanophilus DSM 9941]
          Length = 309

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 69/307 (22%), Positives = 126/307 (41%), Gaps = 21/307 (6%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
            + P     +  +    +L+ L      S  T ++Y  + R FL +L     + +     
Sbjct: 5   QSSPPARPGDEERLLSLYLRTLS-----SPQTQKTYNTEIRAFLSYLRERLGKNLG---- 55

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
            +++  +I  +     T      +  + L+ ++ FL +     IT  +       LK   
Sbjct: 56  -EVTAEDISLYREH-VTGAYAPATAAKKLTALRRFLTFTYMGGITRVNP----EALKFFA 109

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-- 181
             PR   +     L +  L       +  + R+ A+L ++ GCGLR +E + L   +   
Sbjct: 110 KSPRVRQDPSYNILTEEELSRMLSAARADNPRDHALLAVMAGCGLREAEVVGLRVGDFRE 169

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN--LNIQLPLFRGI--RGKP 237
             D   LR++GKGDK+R VP+ P + + +  Y       L+   + + PLF     + +P
Sbjct: 170 HGDAVLLRVRGKGDKVRNVPVSPELWRLVQRYVLSSGRSLSSQTDARKPLFPSRVGKDRP 229

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L     Q  +++  R  G+    + H++RH+  T++  N   L  IQ  LGH    TT  
Sbjct: 230 LTTRSIQNIVKKYVRAAGINKPISPHSIRHTVGTNMAMNQAPLLVIQQFLGHSDPKTTMR 289

Query: 298 YTNVNSK 304
           Y     +
Sbjct: 290 YIRRAEE 296


>gi|118592686|ref|ZP_01550076.1| Integrase [Stappia aggregata IAM 12614]
 gi|118593369|ref|ZP_01550753.1| Integrase [Stappia aggregata IAM 12614]
 gi|118593930|ref|ZP_01551286.1| Integrase [Stappia aggregata IAM 12614]
 gi|118433470|gb|EAV40141.1| Integrase [Stappia aggregata IAM 12614]
 gi|118434047|gb|EAV40704.1| Integrase [Stappia aggregata IAM 12614]
 gi|118434737|gb|EAV41388.1| Integrase [Stappia aggregata IAM 12614]
          Length = 287

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 78/297 (26%), Positives = 126/297 (42%), Gaps = 32/297 (10%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S  +   R+  ++++ + R LS  T +SY     +F  +           ++  +L   
Sbjct: 1   MSKAISPLRRRMIEDMTV-RNLSPATQRSYLHAVSKFSRYFG---------RSPDRLGLE 50

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++RAF        I   +L +++  ++ F      +    E     +   +    LP  L
Sbjct: 51  DVRAFQVHLVATGISWPALNQTVCALRFFYGVTLGQAEIPE----RIAYARAPRKLPEVL 106

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  + +  ++ V             +    L   Y  GLR+SE + L   +I   +  +R
Sbjct: 107 SADEVVRFLEAV----------PSLKTRTALTAAYAAGLRVSEVVGLKVADIDSQRGVIR 156

Query: 190 IQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYI 247
           I+ GKG K R V L   +   +  Y+ L            LF    G  P++  V     
Sbjct: 157 IRHGKGGKDRYVMLSAQLLHILRTYWRLA------RPPDWLFPRRNGSGPISITVLHAAC 210

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R  R   G+    T HTLRHSFATHLL NG D+R IQ +LGH  LS+T  YT V+S+
Sbjct: 211 RSARAAAGIDKRVTVHTLRHSFATHLLENGTDIRIIQVLLGHNNLSSTARYTKVSSR 267


>gi|42524456|ref|NP_969836.1| site-specific recombinase [Bdellovibrio bacteriovorus HD100]
 gi|39576665|emb|CAE80829.1| site-specific recombinase [Bdellovibrio bacteriovorus HD100]
          Length = 294

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 78/315 (24%), Positives = 132/315 (41%), Gaps = 25/315 (7%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK-ITIQTIRQLSYT 69
           +F+L +    +L+ +   +  S LT++ Y  D  Q   +     + K I+   +   +  
Sbjct: 4   AFKLSENIDKYLKYMTFIKSASPLTIKHYSLDLMQAFNYEDPSVKAKSISESELLSTARA 63

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
               +        +   S  R  + +KSF  +  +  +T +   + +   K    LP  +
Sbjct: 64  AFNQW------AHLSLASRNRKAATLKSFFSWAFEESLTEKDLSVQITCPKVPKKLPHFV 117

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  +AL+++ +    T    K            L     R+SEA +L    +   Q  LR
Sbjct: 118 SVDEALSVLKSFDSETKIPLKEKVLFLLLYGGGL-----RVSEACNLKWSEVQTSQKVLR 172

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           ++GKG K R+V L     + +L++     FD  +  + P         LN       +RQ
Sbjct: 173 VKGKGSKERVVALPSLTVEVLLKWKKESSFDEYVFGEKP---------LNSRTAYEMVRQ 223

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                GL      H LRHSFATHLLS+G +LR++Q +LGH  L  T+ YT++    G D 
Sbjct: 224 SGIRAGLLKPLHPHALRHSFATHLLSSGANLRTLQELLGHESLQATEKYTHL----GIDQ 279

Query: 310 MMEIYDQTHPSITQK 324
           +    +  HP    K
Sbjct: 280 LARTMENLHPLGKGK 294


>gi|227539179|ref|ZP_03969228.1| integrase/recombinase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227240861|gb|EEI90876.1| integrase/recombinase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 357

 Score =  172 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 76/288 (26%), Positives = 128/288 (44%), Gaps = 31/288 (10%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +E Q   + L++ +  S  T+++Y  +  Q L  +            +  L Y  +RA+I
Sbjct: 83  REFQRMKEVLQM-KAYSPNTIKTYMVEFAQLLYVVKDV--------PVDSLGYDRLRAYI 133

Query: 76  SKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
                T KI +  L   L+ IK + + +  +          +   K+ ++LP+ L++K+ 
Sbjct: 134 LYCINTLKISESQLHSRLNAIKFYFEQVLHK----PDFFAEIPRPKRRSTLPKVLSQKEV 189

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GK 193
             + + V           + ++  +L L YG GLR+SE ++L   +I   +  + I+ GK
Sbjct: 190 KRIFNTVR----------NRKHLLMLQLCYGMGLRVSEVVNLKVSDIDSGRMQVLIEAGK 239

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R VPL  +V   + EYY           +  LF G  G   +    Q   +   + 
Sbjct: 240 GKKDRYVPLPTAVLDLLREYY------KAYRPKTYLFEGQYGGRYSVRSVQAVFKNAMKA 293

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             +      H LRHS+ATHLL  G D+  IQ +LGH  + TT +Y  V
Sbjct: 294 AKVNRPIGIHGLRHSYATHLLEYGTDISFIQQLLGHNDIKTTMLYAKV 341


>gi|255009008|ref|ZP_05281134.1| putative tyrosine recombinase [Bacteroides fragilis 3_1_12]
 gi|313146748|ref|ZP_07808941.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           3_1_12]
 gi|313135515|gb|EFR52875.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           3_1_12]
          Length = 379

 Score =  172 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 68/285 (23%), Positives = 124/285 (43%), Gaps = 30/285 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L+  R  S  T++ Y      F  + A           ++++S  EI A++     
Sbjct: 105 FLEKLKQMR-YSDHTIRVYTTYIGDFQQYFAG--------SNLKRISPDEINAYLLHLID 155

Query: 81  QK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           +K I      + ++ IK + +    + +  E +   +   K+  +LP  L++++    + 
Sbjct: 156 KKNISSCQQNQRINAIKFYYE----KVLGNERHCYKVNRAKREKTLPDVLSKEEVKDFL- 210

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR 198
                        D R   +  LLY  GLRISE L+L P +I   +S + ++ GKG K R
Sbjct: 211 --------TVAKEDLRFYCMYSLLYSAGLRISELLNLKPDDINISRSLIHVRQGKGKKDR 262

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
              L       + EY       +    +  LF    G   +  +  + ++++    G+  
Sbjct: 263 YTLLSKPFINKLEEY------RIAYQPEKWLFEREAGVQFSESIVSKKLKEIAHEAGITK 316

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
               H  RHSFATHL+  G DL+ I+ +LGH  + TT++Y ++  
Sbjct: 317 RVYPHLFRHSFATHLIEQGTDLKIIKELLGHENIKTTEMYVHIAD 361


>gi|325859510|ref|ZP_08172652.1| phage integrase, N-terminal SAM domain protein [Prevotella
           denticola CRIS 18C-A]
 gi|325482978|gb|EGC85969.1| phage integrase, N-terminal SAM domain protein [Prevotella
           denticola CRIS 18C-A]
          Length = 341

 Score =  172 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 69/313 (22%), Positives = 134/313 (42%), Gaps = 17/313 (5%)

Query: 13  ELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           +  K   ++    L  E G++  T+++Y       L +       +    T++ ++   I
Sbjct: 5   DFSKHISDFFGSYLPDECGVTNNTIKTYSYCFTLLLEYFKEVELIRAQKLTLKHITKERI 64

Query: 72  RAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKR---KITTESNILNMRNLKKSNSLPR 127
            +F++   T +K    +    L  I +F KYL+ R    I    ++L+++  K       
Sbjct: 65  ISFLNWLETTRKCSTNTRNARLGAIHAFFKYLQYRDVTGIAMWQDVLSIKFKKTGVKQMP 124

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS- 186
            L+ +    L+D       ++      R+  ++ LLY   +R+ E +  TP +I   +  
Sbjct: 125 FLSVEAIKALLD-----LPNQKTKKGRRDFVLIGLLYDSAMRVQELIDSTPSDIRFGEIV 179

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           T+R+ GKG+K+R +PL       + +Y           +  PLF   R   L+     + 
Sbjct: 180 TIRVIGKGNKVRTIPLTDVQANNLKQYMLENNMLDKNKLNNPLFSNGRDGKLSRMAVLKI 239

Query: 247 IRQLRRYLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +++  + L       +P     H LRHS A HLL    +L  I+  LGH  ++TT++Y  
Sbjct: 240 VKKYFQILKQNTSIIVPDDIGCHALRHSKAIHLLEANVNLVWIRDFLGHSSVTTTEVYAR 299

Query: 301 VNSKNGGDWMMEI 313
            + K   + + ++
Sbjct: 300 ASDKMKKEALAKL 312


>gi|327405762|ref|YP_004346600.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327321270|gb|AEA45762.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 370

 Score =  172 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 78/289 (26%), Positives = 139/289 (48%), Gaps = 30/289 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  ++  R  S+ T+++Y      FL F+   +   IT   + Q +   I A       
Sbjct: 101 FVAYMQRTR-YSESTIKTYSESIGVFLRFVGVKSTNLITNDDLAQFNNEYIIA------- 152

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +K+      + L+ +K F K     K+  E     ++  + + +LP  L++++   L+  
Sbjct: 153 KKLSASYQNQVLNAVKLFCKVHAGVKLDPE----LVKRPRSAKTLPNVLSKQEVKQLLYA 208

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRI 199
                       + ++  +L ++Y CGLR SE LSL P++I+ D+  + I Q KG K R+
Sbjct: 209 T----------TNLKHRMMLSVIYACGLRRSELLSLQPKDILSDRLLIHIHQAKGKKDRV 258

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPL 258
           VPL   + + + EYY +            +F G +  +       Q  +++      +  
Sbjct: 259 VPLSKLLLEQLREYYKIY------RPIKWIFEGEKPGEKYGERSLQLVLKRALTKTNIKK 312

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
             T H LRHS+ATHLL +G D+R IQ +LGH   +TT+IYT+V++K+  
Sbjct: 313 DVTLHWLRHSYATHLLESGTDIRFIQELLGHKSSTTTEIYTHVSNKSIQ 361


>gi|29348044|ref|NP_811547.1| putative integrase/recombinase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29339946|gb|AAO77741.1| putative integrase/recombinase [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 330

 Score =  172 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 79/316 (25%), Positives = 137/316 (43%), Gaps = 33/316 (10%)

Query: 18  RQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
              +L + + + +  S  TL SY     Q+L F+A  T +      I  L+     AF++
Sbjct: 14  FMRYLSEYIPVIKNQSHNTLTSYRDYYMQYLPFVAKRTGKHADKLLITDLTVERTNAFLN 73

Query: 77  KRRT-QKIGDRSLKRSLSGIKSFLKY--------LKKRKITTESNILNMR-NLKKSNSLP 126
              T +    ++  + L+ IKSF+ Y        ++  ++ +   +  ++  + + + LP
Sbjct: 74  HIETDKGCTIQTRNQRLTAIKSFVHYVYNNAPEYMEWSRLMSTIPMKKVKVKVIEGSVLP 133

Query: 127 RA--LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
               L++++   L+     +T         ++ A+L  LY  G+R SEA SLT  +I+ D
Sbjct: 134 AVSYLDKREMDALL-----NTPDRQTVQGRKDYAMLLFLYNTGVRASEAASLTIGSIIYD 188

Query: 185 QST---LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
            ++   +RI GKG+K R  PL      AI  +               +F    G P+   
Sbjct: 189 DASCPLVRIYGKGNKSRTCPLWNRTLNAIKPFMAGR------RETERVFLNRYGNPMTRF 242

Query: 242 VFQRYIRQLRRYLGL------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                + +                 + HTLRH+ A HL  +G D+ +IQS LGH  L+TT
Sbjct: 243 GIYELLERNVIKATATAPTLAKKRVSPHTLRHTAACHLYESGNDIVTIQSWLGHVSLNTT 302

Query: 296 QIYTNVNSKNGGDWMM 311
            IYT V+ +     +M
Sbjct: 303 NIYTEVSLQMKEKAIM 318


>gi|291522918|emb|CBK81211.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 282

 Score =  172 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 64/285 (22%), Positives = 124/285 (43%), Gaps = 30/285 (10%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           ++N   +R L + T+Q Y  D   FL ++          + +  L+  +  +F++ +R +
Sbjct: 9   IRNEAEKRNLRERTIQLYCSDVSYFLRWIG---------KNVSDLTLEDAESFLTAKRLE 59

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                +     S IK   K + K     +     +  +K+  +LP  L+  +   ++D  
Sbjct: 60  GRSPETHNHYRSAIKFLYKKVLKTVWDDD----TVPAMKRERNLPAVLSRDEINAIIDAT 115

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV 200
                      + ++ AI+  +Y  GLR+SE + L   +I     T+ ++  KG   R  
Sbjct: 116 ----------PNLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGRIDRYT 165

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRRYLGLPLS 259
            L       + EY+  C        +  LF        L+     ++ ++  +  G+   
Sbjct: 166 ILSQKNLDLLTEYWYKC-----GRPKDILFPSSWSGGYLDIASVNQFFKKSAKLAGINRH 220

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            ++H  RHSFA+HL  +G D++ IQS+LGH    +T +Y +V++K
Sbjct: 221 VSSHACRHSFASHLFESGTDIKYIQSLLGHVDPRSTDVYLHVSNK 265


>gi|229162527|ref|ZP_04290488.1| hypothetical protein bcere0009_32990 [Bacillus cereus R309803]
 gi|228621006|gb|EEK77871.1| hypothetical protein bcere0009_32990 [Bacillus cereus R309803]
          Length = 304

 Score =  172 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 64/291 (21%), Positives = 132/291 (45%), Gaps = 15/291 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL    + +L +  + +G +  T+++   + +Q   FL     ++  I  +  ++   ++
Sbjct: 2   ELEDVIEEYLYHC-LAKGFTPKTMKNKRQEMKQLKRFL----MDEKGISELEDINPLHLK 56

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            ++  +  + +  +S+      +++F  + +K +    +    +   K    L +    +
Sbjct: 57  QYVRTKHKEGLQPQSIVSMFKMVRAFFSWCQKEEYLKGNIAKKVELPKVPKKLLKGFTIQ 116

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   ++D           +I+ARN AI+ +L  CGLR  E   L  QN+   ++T+ + G
Sbjct: 117 EVSAMIDAF-----SYKNYIEARNKAIVAMLSDCGLRAMEVRGLLTQNV--KETTILVNG 169

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQL 250
           KG+K RI+ + P ++K ++ Y  L    L   I      F      PL+       I++ 
Sbjct: 170 KGNKERIMFISPPLKKILIRYERLRKQYLKDKIVKTDNYFLSYTADPLSHMGIYNVIKEA 229

Query: 251 RRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            + + +  +  + HT RH FA   + NG D+ ++  +LGH  +STTQ Y  
Sbjct: 230 GKRVEVEEVRCSPHTFRHFFAVQCILNGIDIFTLSKLLGHSDVSTTQRYLQ 280


>gi|322376586|ref|ZP_08051079.1| putative integrase/recombinase XerD [Streptococcus sp. M334]
 gi|321282393|gb|EFX59400.1| putative integrase/recombinase XerD [Streptococcus sp. M334]
          Length = 280

 Score =  172 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 78/285 (27%), Positives = 123/285 (43%), Gaps = 26/285 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  T+++Y+ D  QF                     +  + ++I       I   +L+R 
Sbjct: 2   SSHTIRAYKNDLMQFYNS-----------------DHDNVESYIEHLTQSSIKTNTLRRK 44

Query: 92  LSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQA----LTLVDNVLLHTS 146
           ++ +K F  YLK + I  E+    +R   +    LP+ +         + L   V++  +
Sbjct: 45  IACMKVFYNYLKYQNIIEENPFNQLRFQFRTEKILPKTIPHDILKSIFIYLEQKVIVSKT 104

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
              K    RN  I+ LL   G+RISE   +  ++I     TL I GKG K RI+ L    
Sbjct: 105 DYQKQHAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLHIIGKGKKERILFLGDQK 164

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              +LE Y     +        LF G    KPL+    +  I+++        + T H  
Sbjct: 165 TFNLLETYINKTRN---ESNDFLFPGKHSLKPLSEQSVRLVIKRIVEQNNFSRTITPHMF 221

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           RHSFAT LL +  D+R IQ +LGH  +S TQIYT+V+     + +
Sbjct: 222 RHSFATMLLDSDVDIRYIQQMLGHSSISITQIYTHVSHSKQKEIL 266


>gi|297570372|ref|YP_003691716.1| integron integrase [Desulfurivibrio alkaliphilus AHT2]
 gi|296926287|gb|ADH87097.1| integron integrase [Desulfurivibrio alkaliphilus AHT2]
          Length = 465

 Score =  172 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 73/311 (23%), Positives = 127/311 (40%), Gaps = 57/311 (18%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLS 93
           T Q+Y     ++L FL                   +I  F+ K   +  +   +  ++L+
Sbjct: 165 TEQAYLGWACRYLRFLGEREPAVAG--------EADIALFLQKLAVEGRVAASTQNQALN 216

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            +  F +    R++     + +    K+   LP  L+  + + L++ +        + I 
Sbjct: 217 ALVFFYREAVGREVGE---LGDFVRAKQPRRLPVVLSRSETVRLLEAL--------REIS 265

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAI-- 210
           A +  +  LLYG GLR+ E + L  Q++  D   + ++ GKG K R+VPL   V++ +  
Sbjct: 266 ALHHLMASLLYGTGLRLMECVRLRVQDVDFDLGQIMVRDGKGQKDRVVPLPQGVQEPLRD 325

Query: 211 ----------------------------------LEYYDLCPFDLNLNIQLPLFRGIRGK 236
                                              E+     F        P    +R  
Sbjct: 326 HLAEVRRLHEEDLAQGLGEVYLPEALGRKYPNAAREWGWQFVFPSGRLSTDPRSGVVRRH 385

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            ++    Q+ I++     GL      H LRHSFATHLL+ G D+R++Q +LGH  +STT 
Sbjct: 386 HIHENGLQKSIKKATLAAGLTKRVNCHALRHSFATHLLAAGYDIRTVQELLGHADVSTTM 445

Query: 297 IYTNVNSKNGG 307
           IYT+V ++ G 
Sbjct: 446 IYTHVLNRGGQ 456


>gi|103485566|ref|YP_615127.1| phage integrase [Sphingopyxis alaskensis RB2256]
 gi|98975643|gb|ABF51794.1| phage integrase [Sphingopyxis alaskensis RB2256]
          Length = 302

 Score =  172 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 119/293 (40%), Gaps = 26/293 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ  L ++ + R     T ++Y  D  +F  +L          ++    S  E+R F   
Sbjct: 14  RQRLLDDMAM-RRFGPETQRNYLRDVGRFATWLG---------RSPHTASAEEVRQFQID 63

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           ++   +   ++   +S ++ F        +        +   K+   +P  L   +   L
Sbjct: 64  QQQAGVPVPTMNSIVSALRFFF----TETLDRPDLARKLIRAKQVRKIPVVLTMAEVKRL 119

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
           +D               ++ A L + YG GLR++E  +L   NI   +  LR+ +GKG +
Sbjct: 120 LDATR----------CLKHQAALSVAYGAGLRVAEVSALKVSNIDSKRMLLRVERGKGGR 169

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRRYLG 255
            R   L   +   + +++        L     LF G      ++     R + +      
Sbjct: 170 DRNAMLPEGLLLLLRDWWRAGRQQGILYRDGWLFPGQGAAAHISTRQLHRVVVEAAEAAD 229

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +      HTLRHSFATHLL +G ++R IQ++LGH  L+TT  Y  V +K    
Sbjct: 230 IDKRVGPHTLRHSFATHLLEDGVNIRVIQALLGHANLNTTAFYLQVATKTTRK 282


>gi|291534339|emb|CBL07451.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
          Length = 317

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 64/285 (22%), Positives = 124/285 (43%), Gaps = 30/285 (10%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           ++N   +R L + T+Q Y  D   FL ++          + +  L+  +  +F++ +R +
Sbjct: 9   IRNEAEKRNLRERTIQLYCSDVSYFLRWIG---------KNVSDLTLEDAESFLTAKRLE 59

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                +     S IK   K + K     +     +  +K+  +LP  L+  +   ++D  
Sbjct: 60  GRSPETHNHYRSAIKFLYKKVLKTVWDDD----TVPAMKRERNLPAVLSRDEINAIIDAT 115

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV 200
                      + ++ AI+  +Y  GLR+SE + L   +I     T+ ++  KG   R  
Sbjct: 116 ----------PNLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGRIDRYT 165

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRRYLGLPLS 259
            L       + EY+  C        +  LF        L+     ++ ++  +  G+   
Sbjct: 166 ILSQKNLDLLTEYWYKC-----GRPKDILFPSSWSGGYLDIASVNQFFKKSAKLAGINRH 220

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            ++H  RHSFA+HL  +G D++ IQS+LGH    +T +Y +V++K
Sbjct: 221 VSSHACRHSFASHLFESGTDIKYIQSLLGHVDPRSTDVYLHVSNK 265


>gi|303243200|ref|ZP_07329628.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302589255|gb|EFL59075.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 337

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 79/341 (23%), Positives = 143/341 (41%), Gaps = 26/341 (7%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+ N+  +++S         +L+ +      S  T++SY  DT   L     Y  + ++ 
Sbjct: 1   MKNNHFQQLLSS-------YFLKYIPERTSYSNNTIKSYR-DTFILLFQYHEYLHKSLSK 52

Query: 61  QTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRK---ITTESNILNM 116
            ++  ++   I  F+     +K     S+ + L+ + +F K+++K     I   +++L +
Sbjct: 53  ISLETMNCKYIEDFLVWLECEKHYSVSSVNQRLAAVHAFFKFVQKENPEYIEICTSVLRI 112

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           ++ K         + +    L+          +K    R  AIL LLY  G R+ E   L
Sbjct: 113 KSQKVPVMPMNYFSVEAIKLLL-----SLPDTSKLEGRRELAILTLLYDSGARVQEIADL 167

Query: 177 TPQN-IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           T  +      +T+R+ GKG+K R+VP++P     I  Y D C     +    PLF   +G
Sbjct: 168 TFGDVRNVKPATVRLTGKGNKTRVVPIMPQSLSVINSYMDDCKKKTVILSTYPLFFNKKG 227

Query: 236 KPLNPGVFQRYIRQLRRYLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           + L        + +             P   + HT+RHS + HLL  G +L  I+  LGH
Sbjct: 228 EKLTRAGIAYILDKYVDLARSIRQDLFPNKVSPHTMRHSKSMHLLEGGVNLIYIRDFLGH 287

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT--QKDKKN 328
             + TT+IY   N +     +  +     P+    ++ KK 
Sbjct: 288 ASVVTTEIYAKSNPEIKRKAIEAVSPNVLPTEKYSERQKKE 328


>gi|300854163|ref|YP_003779147.1| phage related integrase [Clostridium ljungdahlii DSM 13528]
 gi|300434278|gb|ADK14045.1| phage related integrase [Clostridium ljungdahlii DSM 13528]
          Length = 336

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 77/304 (25%), Positives = 128/304 (42%), Gaps = 19/304 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RR 79
           +   L+ E G S  T++SY      F  ++  +   KI    +  LS   +  F++   +
Sbjct: 14  FTNYLDREAGFSPNTIKSYRDTFILFFRYIELFRICKINKLNMDILSADNVNDFLNWIEK 73

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTES---NILNMRNLKKSNSLPRALNEKQALT 136
            ++    S  + L+ +KSF  Y+ +           +L +R  K +      LN +    
Sbjct: 74  ERQCTVSSRNQRLAALKSFCIYVIRENPEKSDICQQVLGIRAKKATQKSIGYLNIEAI-- 131

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTLRIQGKGD 195
              + LL    +T     R+ A+L LLY  G R+ E + L   +I     +T+ + GKG+
Sbjct: 132 ---SYLLKMPDKTSDRGIRDLALLALLYETGCRVQEIIDLKIGDISFRIPNTVALTGKGN 188

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           KIR+VP+   V + I  Y  +       N +  +F    G PL+       + +      
Sbjct: 189 KIRVVPISQQVSEIIKNYLSISTRH---NFEENIFVNRLGNPLSRSGVAYILNKYGDMAR 245

Query: 256 L------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                  P     H LRHS A HLL N  +L  I+  LGH  ++TT+IY   N +    +
Sbjct: 246 KNRLDLYPYKLHPHILRHSKAMHLLENNVNLIYIRDFLGHSSVTTTEIYARCNPELKRKY 305

Query: 310 MMEI 313
           + E 
Sbjct: 306 IEEA 309


>gi|254449557|ref|ZP_05062994.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198263963|gb|EDY88233.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 315

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 124/293 (42%), Gaps = 30/293 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ  ++++ I R + + T + +    + F  FL          ++    +  E+RA+   
Sbjct: 30  RQRMIEDMRI-RAIGETTQKGHIRAIKHFATFLG---------RSPDTATPDELRAYQLH 79

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
               ++   +    +  ++ F      R+         M+  +K   LP  L+ ++   L
Sbjct: 80  MTDTEVTTSTFNTRIVSLRLFFGVTCGREEMK----RYMQFRRKPRRLPVVLSVEEIGDL 135

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
           +  V                A L + YG GLR SE   L   +I   +  + + +GK  K
Sbjct: 136 LAAV--------PGPGLTYRAALGISYGAGLRASEVCHLKVVDIDSGRMLIHVDEGKNGK 187

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLG 255
            R   L P +   + EY+      L    +  LF G  +  PL+P    R     +   G
Sbjct: 188 DRKAMLSPGLLDLLREYW------LEARPEGWLFPGKPKINPLSPRQLNRAFTSAKHMAG 241

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +    T HTLRHSFATHLL  G D+R IQ +LGH +LSTT  YT+V +K   +
Sbjct: 242 INKPVTLHTLRHSFATHLLEAGTDVRVIQVLLGHSKLSTTARYTHVATKTIRN 294


>gi|170694112|ref|ZP_02885267.1| integrase family protein [Burkholderia graminis C4D1M]
 gi|170696177|ref|ZP_02887311.1| integrase family protein [Burkholderia graminis C4D1M]
 gi|170138905|gb|EDT07099.1| integrase family protein [Burkholderia graminis C4D1M]
 gi|170140852|gb|EDT09025.1| integrase family protein [Burkholderia graminis C4D1M]
          Length = 291

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 78/306 (25%), Positives = 133/306 (43%), Gaps = 30/306 (9%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            S ++   RQ+ + ++ + R L+  T   Y    RQF  FL          +     +  
Sbjct: 4   TSQDISPLRQHMIDDMRM-RKLAPQTQAGYVRVVRQFAAFLG---------RPPDTATVE 53

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++R +        I   SL  +++G+K F +    +       +  M+ ++   +LP  L
Sbjct: 54  DLRRYQLHLVDHGISPVSLNAAITGLKFFFEITLNQPGL----MARMQPVRVPRTLPVVL 109

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  +   L+              + ++   L + YG GLR SE ++L   ++   + TLR
Sbjct: 110 SPDEVARLI----------AAAGNLKHQTALSVAYGAGLRASEVVALKVGDVDSQRMTLR 159

Query: 190 I-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYI 247
           I QGKG + R   L P + + +  ++ +      +     LF G+    PL+     R I
Sbjct: 160 IEQGKGRRDRYAMLSPVLLERLRVWWRVAHAQGRMLEGGWLFPGLDPVDPLSTRQLNRAI 219

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                   L    + HTLRHSFATHLL    D+R IQ +LGH +L TT +YT V +    
Sbjct: 220 HAAAEEAHLGKRVSMHTLRHSFATHLLEQKEDIRVIQVLLGHKKLETTSLYTQVAT---- 275

Query: 308 DWMMEI 313
           D + ++
Sbjct: 276 DLLRKV 281


>gi|120406876|ref|YP_956705.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119959694|gb|ABM16699.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 329

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 70/304 (23%), Positives = 111/304 (36%), Gaps = 23/304 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-R 79
           +   L  +R +S  T+ SY    R  + F    T +  +      L    I +F+     
Sbjct: 12  FTDRLTKQRQVSPRTIASYRDSLRLLIGFAQERTGKTPSRLEWTDLDADLIASFLDHLEH 71

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTES---NILNMRNLKKSNSLPRALNEKQALT 136
            +    R+    L+ I+S   +   R          +L +   +    L   L   +   
Sbjct: 72  VRHNSARTRNLRLTAIRSLFGFAALRHPEHAEVIQQVLAIPAKRFDKQLITFLTATEIEA 131

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGD 195
           L+D          +W   R+ A+L L    GLR++E   L   +I   D S++R  GKG 
Sbjct: 132 LID-----APDTDRWEGRRDRALLLLASQTGLRVAEMTGLNCSDITFGDGSSIRCMGKGR 186

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R VPL  + +  +  +              PLF    G+ L+    +R +R       
Sbjct: 187 KRRAVPLTTTTQAVLRVWLTERGDV----PDQPLFPTRTGRRLSTDTVERLVRLHAATAA 242

Query: 256 L------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN---SKNG 306
                  P     H LRH+ A  LL  G D   I   LGH  + +T IY + +    +  
Sbjct: 243 RTCPTIRPAELHPHVLRHTCAMSLLHAGIDTAVIALWLGHADIRSTGIYLHTDLTIKQRA 302

Query: 307 GDWM 310
            D M
Sbjct: 303 LDAM 306


>gi|227461189|gb|ACP39541.1| putative integron integrase [uncultured microorganism]
          Length = 316

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 75/311 (24%), Positives = 132/311 (42%), Gaps = 60/311 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRS 87
           R  S  T ++Y    R+F++               R +   E+ AF+S+  T+  +   +
Sbjct: 28  RHYSLRTERAYVDWIRRFVMANGKRHP--------RDMGAAEVEAFLSRLATRDDVAAST 79

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++LS +    + +          + ++   K+   +P  L+  +   L+         
Sbjct: 80  QNQALSALLFLYREVLG---IQLPWMESVVRAKRPQKIPAVLSRAEVTRLL--------- 127

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
               +D + + +  LLYG G+R+ E + L  Q++  D++ + ++ GKG K R VPL   V
Sbjct: 128 --ALMDGQVALMASLLYGTGMRLMECVRLRVQDVGFDRNEICVRNGKGGKDRRVPLPRRV 185

Query: 207 RKAIL------------------------------------EYYDLCPFDLNLNIQLPLF 230
           R+ +L                                    E+     F      + P  
Sbjct: 186 RERLLEQVERVRILHGQDLATGAGEVFLPHALARKYPGAGREFCWQYVFPSLRESKDPRS 245

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
              R   ++ GV QR ++  R   G+    + HTLRHSFATHLL +G D+R++Q ++GH 
Sbjct: 246 GKRRRHHVDEGVLQRAVKIARDKAGIDKPASCHTLRHSFATHLLESGQDIRTVQELMGHK 305

Query: 291 RLSTTQIYTNV 301
            +STT IYT+V
Sbjct: 306 DVSTTMIYTHV 316


>gi|307323013|ref|ZP_07602264.1| integrase family protein [Sinorhizobium meliloti AK83]
 gi|306891340|gb|EFN22275.1| integrase family protein [Sinorhizobium meliloti AK83]
          Length = 328

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 72/310 (23%), Positives = 125/310 (40%), Gaps = 22/310 (7%)

Query: 13  ELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           +L +    +L ++L  ER  S  T  +Y    +  + F A    ++  +     +    I
Sbjct: 3   QLAQHLTAFLREHLPRERRASVHTCDAYAYSFQLLVTFAARRLSKRPCLLN-EDIDVPMI 61

Query: 72  RAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPR 127
            AF+     T+    RS    L+ +KSF +YL+ R        L +  +   K   +L  
Sbjct: 62  LAFLEHIEETRGNKARSRNARLAAVKSFFRYLEHRVPAVLDQALRVHAMPMKKIDEALVA 121

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-S 186
           +L+  +   L     L+          R+ A+L+L +  GLR+SE + LT         +
Sbjct: 122 SLSRTEVQAL-----LNAPDRRSLSGIRDRAMLHLAFAGGLRVSELVGLTLDQFDGRSPA 176

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           ++ I GKG + R++PL      AI  +  + P     N    LF    G+ +    F+  
Sbjct: 177 SIHIIGKGRRERVLPLWQETAAAIRAWIAVRP----KNGDTALFLNNAGRMMTRSGFEYI 232

Query: 247 IRQLRRYLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           + +               S + H LRHS A H+L    D+R +   LGH  L + +IY  
Sbjct: 233 LEKHAAAAVSVAPTLTTKSISPHVLRHSCAMHMLQATRDIRKVALWLGHASLQSAEIYLR 292

Query: 301 VNSKNGGDWM 310
            +     + +
Sbjct: 293 ADPTEKLEML 302


>gi|328462457|gb|EGF34479.1| tyrosine recombinase xerD [Lactobacillus rhamnosus MTCC 5462]
          Length = 182

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 57/164 (34%), Positives = 86/164 (52%), Gaps = 1/164 (0%)

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
           +     TK +  R+ AI  L+Y  GLR+SE + L    +    + L++ GKGDK R+VP+
Sbjct: 1   MAKPDTTKPLGLRDRAIFELMYATGLRVSEVVGLRLDQLHLAMNLLQVTGKGDKERLVPI 60

Query: 203 LPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            P     +  Y     P  +       +F    G  L      + ++     +G+    T
Sbjct: 61  SPQAADWVNRYLQESRPRLIKHQQPKAVFVNFHGHALTRQAIWKNLKAYIASVGIEKDVT 120

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            HTLRHSFAT LL NG DLR +Q +LGH  +STTQIYT++++++
Sbjct: 121 PHTLRHSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQH 164


>gi|320161829|ref|YP_004175054.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
 gi|319995683|dbj|BAJ64454.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
          Length = 292

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 63/305 (20%), Positives = 140/305 (45%), Gaps = 28/305 (9%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L++ + WLQ    E+  S +T++ Y  D R F  +      + + ++   +++  ++R +
Sbjct: 4   LEQFEVWLQ----EQDRSPVTVRGYMADLRAFAAWFEQTNGKALGVE---EVTPADVREY 56

Query: 75  ISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
               +  ++ G  +++R L  ++++ ++  + +         ++  ++    P  L +++
Sbjct: 57  RGWLQAVKRAGAATVRRHLMALRAYCRWGVETERIDRDPTARVKLPREETLSPGWLAKQE 116

Query: 134 ALTLVDNVLLHTSHETKW----IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ--ST 187
              L+       S         +  R+ A++  L   GLRI+EA +LT +++   +    
Sbjct: 117 QYRLLREAERAVSAADTPTRRRLAVRDRALVVFLLNTGLRIAEACALTVEDVQIGERSGW 176

Query: 188 LRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           + ++G KG+K R VPL   VR+A+  +      +   + +  +F       L P    R 
Sbjct: 177 VVVRGGKGNKSRKVPLNVEVRRALNAW-----REERGDGEGSVFD------LTPSGAYRR 225

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           + ++ R  G+      HTLRH+ A +L+  G  L  + ++LGH  L+TT++Y     ++ 
Sbjct: 226 LVEMGRRAGVE--VHPHTLRHTLAKNLVDAGVGLHEVAALLGHSSLNTTRVYVTPGERDL 283

Query: 307 GDWMM 311
              + 
Sbjct: 284 ERALQ 288


>gi|114762531|ref|ZP_01441975.1| INTEGRASE/RECOMBINASE [Pelagibaca bermudensis HTCC2601]
 gi|114767359|ref|ZP_01446166.1| INTEGRASE/RECOMBINASE [Pelagibaca bermudensis HTCC2601]
 gi|114540563|gb|EAU43638.1| INTEGRASE/RECOMBINASE [Roseovarius sp. HTCC2601]
 gi|114544786|gb|EAU47791.1| INTEGRASE/RECOMBINASE [Roseovarius sp. HTCC2601]
          Length = 334

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 79/324 (24%), Positives = 133/324 (41%), Gaps = 26/324 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+  N       ELL+    + + L  +R  S  T++SY    R  L F+A      +  
Sbjct: 1   MKATN----PFPELLRAF--FQEWLAEQRSASIHTIKSYRDTWRMLLRFVAERNGGGVAR 54

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGD-RSLKRSLSGIKSFLKYLKKRK---ITTESNILNM 116
            T+  +S +E+RAF++     + G   +    L+ I+SF  ++  +    I   + +L +
Sbjct: 55  ITLADVSASEVRAFLTHAEHGRKGTIGTRNCRLAAIRSFFSFVADKDPEYIAQCAEVLTI 114

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              +K  + P  L   +   ++          +     R+  +L LLY  G RI EAL L
Sbjct: 115 PLKRKPTAAPCYLEPGEVEAIL-----AQPDRSTIEGMRDHVLLSLLYNSGARIQEALDL 169

Query: 177 TPQNIMDDQ-STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
            P  I  +    +R+ GKG K RI PL P     + +  +  P   +      +F    G
Sbjct: 170 CPGAIRFEAPYYVRLYGKGRKERICPLWPETVALMKKLLERQPRAPDER----IFVNRYG 225

Query: 236 KPLNPGVFQRYIRQLRRYLGLP------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           +PL     +  +                   T H+ RH+ A HL++ G D+  I+S LGH
Sbjct: 226 EPLGASGVRFKLAAYVAAAAKTTPSLRLKHVTPHSFRHATAVHLVAAGVDITVIRSWLGH 285

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEI 313
             L TT  Y   N +     + ++
Sbjct: 286 VSLDTTNHYAQANLETKRKALEQV 309


>gi|94268395|ref|ZP_01291163.1| Phage integrase [delta proteobacterium MLMS-1]
 gi|93451622|gb|EAT02417.1| Phage integrase [delta proteobacterium MLMS-1]
          Length = 177

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 66/179 (36%), Positives = 86/179 (48%), Gaps = 15/179 (8%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
           AR+ AIL LLY  GLR+SE   L    +      +R+ GKG+K R+VP+  +   AI  Y
Sbjct: 1   ARDRAILELLYATGLRVSELAGLDLAQLDLAXGMVRVMGKGNKERLVPMGTAAVAAIEAY 60

Query: 214 YDLCPFDL-----------NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
                  L                 PL    RG  L     +R ++      G+    + 
Sbjct: 61  LFQRQVLLRQTAGQQKEGKKARGADPLLVNSRGGRLTSRSIERLVKMYAERAGIAARVSP 120

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           H LRHSFATHLL  G DLR +Q +LGH  LSTTQ YT++N     D +  +YDQ HP  
Sbjct: 121 HALRHSFATHLLEMGADLRVVQELLGHASLSTTQRYTHLN----LDHLTAVYDQAHPLA 175


>gi|289628758|ref|ZP_06461712.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|330870488|gb|EGH05197.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 320

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 67/277 (24%), Positives = 123/277 (44%), Gaps = 23/277 (8%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T ++Y+ D   F  F+        +    RQ++ + + A+ +    + +   +++R L
Sbjct: 39  PRTRRAYQNDLTDFSAFIGL-----ASADDFRQVTRSHVLAWRANLEQRGLAGATIRRKL 93

Query: 93  SGIKSFLKYLKKRKITTE-SNILNMRNLKKSNSLPRALNEKQALTLVDNV---LLHTSHE 148
           + + S   +L +       + +  ++  K  +      NE +   L D+    LL    E
Sbjct: 94  AALASLFDHLLESNAIAGGNPVHGVKRPKIES------NEGKTPALGDHQAKALLEAPDE 147

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSV 206
           +     R+ A+L +L   GLR  EA  L   +I + +    L+I GKG K+R +PL P  
Sbjct: 148 STLKGLRDRAMLAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKGGKVRYLPLHPVA 207

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKP----LNPGVFQRYIRQLRRYLGLPL-STT 261
              I  Y +     L  + ++PLF  +RGK     ++       +    +  G+ +    
Sbjct: 208 AGRIHWYLERSGHHLG-DKKVPLFISLRGKSTGASISANGIYTVVEAYTKKAGIEVAGLG 266

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            H LR + AT+ L +  D+  +Q+ LGH  +STT+IY
Sbjct: 267 VHGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303


>gi|260642793|ref|ZP_05417338.2| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
 gi|260620552|gb|EEX43423.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
          Length = 368

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 72/287 (25%), Positives = 137/287 (47%), Gaps = 30/287 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L  ++  S  T+++Y+     F+ +           Q +  L+  +I +++   
Sbjct: 94  KGYLE-LLEQKRYSLSTIKAYKIYFSDFMEYHKG--------QDLDLLTVEDINSYMLHM 144

Query: 79  -RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            + + I        ++ IK + + ++K K         +   K+  +LP  L+ ++  ++
Sbjct: 145 VKEKHISATQQNMRINAIKFYYEKVRKGKRQYYG---GIARAKEYKALPEVLSREEMKSI 201

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                       +  + ++  ++ L+Y  GLR SE L+LTPQ+I+ ++  +RI GKG K 
Sbjct: 202 F----------AQLSNRKHRCMISLIYSAGLRRSELLNLTPQDIISERMLIRIAGKGKKC 251

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGL 256
           R   L   +   + +YY           Q  LF G + G+  +P    + +++  R  G+
Sbjct: 252 RYSLLSEKLLNELRDYYR------EYRPQKWLFEGEQAGEQYSPSALVKILKEAARKAGI 305

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
                 H LRH+FATHLL  G DLR+IQ ++GH  + TT IY +V++
Sbjct: 306 KHRVHLHMLRHTFATHLLEQGTDLRTIQELMGHTDIKTTAIYLHVSN 352


>gi|213417883|ref|ZP_03350981.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 186

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 62/195 (31%), Positives = 99/195 (50%), Gaps = 12/195 (6%)

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++      L+D  L         +  R+ A+L ++YG GLR+SE + L  +++  D   +
Sbjct: 2   IDVDDVNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEV 55

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG K R +P+  +    I  + DL    L  + +  LF    GK ++    Q+   
Sbjct: 56  WVMGKGSKERRLPIGRNAVTWIEHWLDLRG--LFASDEEALFLSKLGKRISARNVQKRFA 113

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +     GL      H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ ++   
Sbjct: 114 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 170

Query: 309 WMMEIYDQTHPSITQ 323
            +  +YD  HP   +
Sbjct: 171 -LASVYDAAHPRAKR 184


>gi|291563477|emb|CBL42293.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4]
          Length = 350

 Score =  172 bits (435), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 64/291 (21%), Positives = 117/291 (40%), Gaps = 23/291 (7%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTE-------EKITIQTIRQLSYTEIRAFISKRRTQK-- 82
           S  T  +Y  D + F  FL              +T   + +L+ +++  +I   +     
Sbjct: 41  SVRTRIAYAHDLKIFFQFLKTANPRTFDNPAHTLTPGDLEKLTVSDLEEYIDYLKCHPSD 100

Query: 83  ------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                   +R L R +S ++SF  Y  + ++  ++    +R  K        L   +   
Sbjct: 101 TCEDVVNTERGLMRKVSSLRSFYSYFFRNELIEKNPAALVRMPKLHEKEIIRLEIDEVAK 160

Query: 137 LVDNVLLHTSHETK------WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           L+D V        K          R+ A++ LL G G+R+SE + L   +I  D    R+
Sbjct: 161 LLDEVEEGDKLTEKQKLYHERTKVRDLAMMSLLLGTGIRVSECVGLNINDIDLDTCGARV 220

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
             KG K  ++     VR  + +Y D     D     +  LF  ++ K +N    +  +++
Sbjct: 221 YRKGGKESVIYFSDEVRDVLEDYLDEREMIDAVPGNEDALFLSMQRKRINVRSVENLVKK 280

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYT 299
             + +      T H LR ++ T L    GD+  + S+LGH  ++TT+  Y 
Sbjct: 281 YAKLVTPLKKITPHKLRSTYGTSLYRETGDIYLVASVLGHNDVNTTRKHYA 331


>gi|118592747|ref|ZP_01550137.1| Integrase [Stappia aggregata IAM 12614]
 gi|118434798|gb|EAV41449.1| Integrase [Stappia aggregata IAM 12614]
          Length = 287

 Score =  172 bits (435), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 123/294 (41%), Gaps = 32/294 (10%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S  +   R+  ++++ + R LS  T +SY     +F  +           ++  +L   
Sbjct: 1   MSKAISPLRRRMIEDMTV-RNLSPATQRSYLHAVSKFSRYFG---------RSPDRLGLE 50

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++RAF        I   +L +++  ++ F      +    E     +   +    LP  L
Sbjct: 51  DVRAFQVHLVATGISWPALNQTVCALRFFYGVTLGQAEIPE----RIAYARAPRKLPEVL 106

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  + +  ++ V             +    L   Y  GLR+SE + L   +I   +  +R
Sbjct: 107 SADEVVRFLEAV----------PSLKTRTALTAAYAAGLRVSEVVGLKVADIDSQRGVIR 156

Query: 190 IQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYI 247
           I+ GKG K R V L   +   +  Y+ L            LF    G  P++  V     
Sbjct: 157 IRHGKGGKDRYVMLSAQLLHILRTYWRLA------RPPDWLFPRRNGSGPISITVLHAAC 210

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R  R   G+    T HTLRHSFATHLL NG D+R IQ +LGH  LS+T  YT V
Sbjct: 211 RSARAAAGIDKRVTVHTLRHSFATHLLENGTDIRIIQVLLGHNNLSSTARYTKV 264


>gi|320333098|ref|YP_004169809.1| integrase family protein [Deinococcus maricopensis DSM 21211]
 gi|319754387|gb|ADV66144.1| integrase family protein [Deinococcus maricopensis DSM 21211]
          Length = 297

 Score =  172 bits (435), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 68/311 (21%), Positives = 124/311 (39%), Gaps = 23/311 (7%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSY---ECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           E     + +  +L I+R  SK TL  Y        +FL       +E IT  T  +L+ T
Sbjct: 2   EATALYEQFAYHLRIKRR-SKNTLNFYDVSRRTLHRFLE------QEGITPDT-DELTVT 53

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +RAF+     Q +G   +      +K+   +  + ++ T +  + +            +
Sbjct: 54  HLRAFLVWLGDQGLGPGGIHAQARALKAVFNWGFREELLTRNPAVRLELPSLPKERQPTV 113

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
             +   +L+         +      R+SAI+ +L   GLR+ E + L  +++  ++  +R
Sbjct: 114 TVEVMRSLLKAC------KGTERPLRDSAIVLMLLDTGLRVHELIGLKLEDLQFERGLIR 167

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG+K R VP+      A   Y        +  +   +F    G+ +        + +
Sbjct: 168 VVGKGNKERFVPVGSKAMSATSAYLRRERKQRHPGV-PHVFLSRSGEVMTRSGISIRLAK 226

Query: 250 LRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           L R  G+       H  R  FA   L NGGD+ ++Q I+GH  L  T+ Y         D
Sbjct: 227 LARSTGIEREACAPHAFRRGFAVEFLRNGGDVFTLQQIMGHSSLDMTRRYVTFLD----D 282

Query: 309 WMMEIYDQTHP 319
            +   + +  P
Sbjct: 283 DLKAAHLRFSP 293


>gi|154483513|ref|ZP_02025961.1| hypothetical protein EUBVEN_01217 [Eubacterium ventriosum ATCC
           27560]
 gi|149735423|gb|EDM51309.1| hypothetical protein EUBVEN_01217 [Eubacterium ventriosum ATCC
           27560]
          Length = 351

 Score =  172 bits (435), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 56/305 (18%), Positives = 119/305 (39%), Gaps = 23/305 (7%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITI-------QTIRQLSYTEIRAFISKRR----- 79
           S  T  +Y  D   F  ++     E   +       + + +++ T+I  ++   R     
Sbjct: 42  SSRTRIAYCYDLIVFFNYIKSSNPEMANVPVVDYPMELLDKITATDIEEYLEYLRYYVTE 101

Query: 80  ---TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                  G+R + R L+ +++  +Y  K++    +    +   K        L+  +   
Sbjct: 102 DGKEHTNGERGIMRKLACLRTLYRYFYKKESIKTNPASIVDMPKIHEKEIVRLDADEVSV 161

Query: 137 LVDNVLLHTSHETKWIDARNS------AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           L+D V L            +       AIL LL G G+R+SE + +   +I    S ++I
Sbjct: 162 LLDQVELGDKLTKSQQKFHDKTKTRDMAILTLLLGTGMRVSECVGIDINDIDFKNSGIKI 221

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + KG    ++     V  A+L+Y +     +  +  +  LF  ++ + +     +  +++
Sbjct: 222 RRKGGNETVIYFGEEVENALLDYLEERKLIVPQDGHENALFLSLQKRRIGVRAVENLVKK 281

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
               +      T H LR ++ T L    GD+  +  +LGH  ++TT + Y  +  +    
Sbjct: 282 YSSLVTNLKKITPHKLRSTYGTALYKETGDIYLVADVLGHKDVNTTKKHYAAIEDERRRK 341

Query: 309 WMMEI 313
               +
Sbjct: 342 ARNAV 346


>gi|78043985|ref|YP_361456.1| phage integrase family site specific recombinase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996100|gb|ABB14999.1| site-specific recombinase, phage integrase family [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 312

 Score =  172 bits (435), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 65/323 (20%), Positives = 134/323 (41%), Gaps = 35/323 (10%)

Query: 6   LPEIVSFE------LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
           +P+ + F+      L + ++ +L   + + GL+  TL+ Y     +F+            
Sbjct: 1   MPKPIPFKKSLEVNLSQLKEEFLIARQAD-GLAPRTLEDYRWHIEKFMELTGANP----- 54

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
                  +Y  +R  I +  ++    R     L  +K+F  +  +      +    +R  
Sbjct: 55  -------TYEAVRKAILQHLSEPSSPRYRNIKLQYLKAFFNWCVREGYLPANPTDGIRKA 107

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K+  S  R ++ +    L+         +  +   R+  ++ +    G R SE L + P 
Sbjct: 108 KEDISNVRHVSIEAVKKLL-----AQPDKKTYAGLRDYCLMLVQIDTGARPSELLQIKPD 162

Query: 180 NIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
           ++  D   + ++    K    R + + P   +A++ +  + P     + ++PLF    G+
Sbjct: 163 DLNLDAREIYVRADVAKTRIGRTLVISPFTVQALMRFLKIRPSW--WSNEVPLFASENGR 220

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L    + R +++     G+    T + LRH+FA   L  GGD  S+Q ILGH  L+ T+
Sbjct: 221 QLTAQRWSRIVKRYCEEAGV--KVTPYGLRHTFAIEFLKGGGDPFSLQRILGHTDLTMTR 278

Query: 297 IYTNVNSKNGGDWMMEIYDQTHP 319
            Y  ++     D + EI+++  P
Sbjct: 279 RYVRLSQ----DDIKEIHEKASP 297


>gi|91780847|ref|YP_556054.1| putative phage integrase [Burkholderia xenovorans LB400]
 gi|91693507|gb|ABE36704.1| Putative phage integrase [Burkholderia xenovorans LB400]
          Length = 291

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 128/298 (42%), Gaps = 30/298 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ    ++ + R LS  T  +Y    R+F  FL          ++    +  ++R +   
Sbjct: 12  RQRMTDDMRM-RQLSPKTQDTYLRIVREFARFLG---------RSPDTATVEDLRRYQLH 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    SL  +++G+K F +    R       ++ M  ++   +LP  L+  +   L
Sbjct: 62  LVDHGTSPVSLNHAITGLKFFFEVTLDR----PDLMVRMHPVRVPRTLPVVLSPDEVRRL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
           ++             + ++   L + YG GLR SE ++L   +I   + TLRI QGKG +
Sbjct: 118 IEA----------AGNLKHQTALSVAYGAGLRASEVVALKVTDIDSQRMTLRIEQGKGRR 167

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLG 255
            R   L P + + +  ++ +      +     LF G+    PL+     R I        
Sbjct: 168 DRYAMLSPVLLERLRVWWHVARAQGRMPDGGWLFPGLDPVDPLSTRQLNRAIHAAAEAAQ 227

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +    + HTLRHSFATHLL    D+R IQ +LGH +L  T +Y  V +    D + E+
Sbjct: 228 IDKRVSMHTLRHSFATHLLEQKVDIRVIQVLLGHAKLENTALYVQVAT----DLLHEV 281


>gi|47566156|ref|ZP_00237184.1| phage integrase family domain protein [Bacillus cereus G9241]
 gi|47556709|gb|EAL15040.1| phage integrase family domain protein [Bacillus cereus G9241]
          Length = 308

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 59/305 (19%), Positives = 126/305 (41%), Gaps = 13/305 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L + E  + ++  TLQSY    +QF  F   +      +  +  ++ + ++ +I   +
Sbjct: 12  DFLDDREF-KNVTPKTLQSYRDILKQFEDFCLEH-----DVINVEDITASIMKRYILHYQ 65

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +     +    L  I++FL Y+ + ++   +    ++  ++   +     +     +++
Sbjct: 66  KKGNNATTTNSKLQRIRAFLNYMIECEVIKNNPAKKIQKAREDVRI-DVFTDYHIKQMLN 124

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                   E  +   R+ +I+ +L G GLR SE  SL   +I     TL + GK  K   
Sbjct: 125 YYRRIKQREKTFYAYRDYSIIVVLLGTGLRQSELCSLKWTDIDFKYQTLSVFGKSRKRES 184

Query: 200 VPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +P+   V   +  Y   C    +   +   +F     K L P   Q   ++L + +    
Sbjct: 185 IPVADKVLMELATYKTFCEQTFVEKGLSEYVFTNRSNKQLTPNAVQNVFKRLAKIMNFKD 244

Query: 259 -STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              ++HT RH+F    + +G    ++Q ++ H  +  T+ Y        G+ + E  D+ 
Sbjct: 245 VRLSSHTFRHTFCQRCIQSGMSTFAVQRLMRHSSIVVTERYA----AMWGNDLKEQNDKF 300

Query: 318 HPSIT 322
           +P  T
Sbjct: 301 NPLNT 305


>gi|242237763|ref|YP_002985944.1| site-specific tyrosine recombinase XerC [Dickeya dadantii Ech703]
 gi|242239427|ref|YP_002987608.1| site-specific tyrosine recombinase XerC [Dickeya dadantii Ech703]
 gi|242129820|gb|ACS84122.1| integrase family protein [Dickeya dadantii Ech703]
 gi|242131484|gb|ACS85786.1| integrase family protein [Dickeya dadantii Ech703]
          Length = 366

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 66/302 (21%), Positives = 125/302 (41%), Gaps = 18/302 (5%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT---QK 82
             ER  S+ TL++      +F+++ A         + I        +  + + R    + 
Sbjct: 42  RRERNWSETTLKTQTHHQYRFILWAAERGLHY--GRDITLPILEHYQRHLYQYRKPNGEP 99

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVDNV 141
           +  R+ +  L  +  +  ++ +  +        +   +    LPR  L+      ++   
Sbjct: 100 LSTRTQRSQLGPLVVWFGWMTRHHLLLADPASGLVLPRLEKRLPRHILSVADVEQVL--- 156

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV 200
                  T     R+ A++ LL+  G+R  E   L   ++   +  + I QGKG K R++
Sbjct: 157 --ALPDLTTLQGIRDRALMELLWSTGIRRGEVAVLEVYSVDASRHIVTIVQGKGKKDRVI 214

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIR-GKPLNPGVFQRYIRQLRRYLGLPL 258
           P+     + +  Y       L +N   P LF  +   + L P      +    +  G+  
Sbjct: 215 PVGQRALRWLTYYVQAVRPQLLVNPHCPALFVALDGVEGLTPNGITNLVSHYIKASGIAK 274

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             + H  RH+ AT +L NG DLR IQ++LGH  + +TQIYT V+ +     +  ++  TH
Sbjct: 275 WGSCHLFRHAMATQMLENGADLRWIQAMLGHASVESTQIYTQVSIR----ALQAVHASTH 330

Query: 319 PS 320
           P+
Sbjct: 331 PA 332


>gi|116622057|ref|YP_824213.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225219|gb|ABJ83928.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 336

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 76/330 (23%), Positives = 136/330 (41%), Gaps = 25/330 (7%)

Query: 11  SFELLKERQNWLQ-NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           S  LL   +++    L   RG S  T+++Y    + F +FLA    + +    +  +   
Sbjct: 6   SESLLALTESFFHNYLRQTRGASVHTVRAYRDALKLFYLFLAGQKRKPVANLALDDIQSD 65

Query: 70  EIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN---ILNMRNLKKSNSL 125
            + AF+      +     +    L+ ++SF+++L +  +T       IL +RN K    +
Sbjct: 66  ALLAFLDYVESRRGNSAVTRNCRLAAVRSFVQHLLRHDVTRAGQYGRILAIRNKKALRRV 125

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
              L  ++A  ++                R+ A+L  LY  G R+SEAL++   ++  ++
Sbjct: 126 ATYLEPEEARAVI-----AAIDRRSRNGERDHALLLFLYNTGARVSEALAIRASDLQLER 180

Query: 186 -STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
              +R+ GKG K RI PL P    A+     +       + +  LFR   G  L      
Sbjct: 181 PRQVRLLGKGRKERICPLWPETASALHRIIPVR------SGEDSLFRNTLGALLTRDGVA 234

Query: 245 RYIRQLRRYLGL------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             +R+  R              T H +RHS A  LL  G D+  I+  LGH  ++TT  Y
Sbjct: 235 YLLRKYVRSAAQHAPSLRKRRVTPHVMRHSCAVALLQAGIDVSVIRDYLGHASVATTSRY 294

Query: 299 TNVNSKNGGDWMMEIYDQT--HPSITQKDK 326
              N +   D +   + +    P+  ++ +
Sbjct: 295 ITTNLQMKRDVLEAFWKRAGLGPAAPRRWR 324


>gi|85707316|ref|ZP_01038400.1| putative integrase/recombinase [Roseovarius sp. 217]
 gi|85668197|gb|EAQ23074.1| putative integrase/recombinase [Roseovarius sp. 217]
          Length = 335

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 65/313 (20%), Positives = 129/313 (41%), Gaps = 21/313 (6%)

Query: 13  ELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            L      ++   L  +RG S  + ++Y    +    F A       +  +I QL    I
Sbjct: 3   ALAPAITQFMQDYLPRQRGFSAHSSETYAHAFKLLFQFAARRVGSSPSQLSIEQLDAPLI 62

Query: 72  RAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN---SLPR 127
            AF+    T +  G  S    L+ IKSF+++++ +     + +  +R +        L +
Sbjct: 63  LAFLDHLETDRGNGATSRNARLAAIKSFMRFVEYQYPALLAQVAQIRAIPTKRCENKLVQ 122

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS- 186
            L++ +   ++     +    T  + AR+ A+++L +  GLR+SE +     +++  Q+ 
Sbjct: 123 HLSKDEVQAVL-----NAPDVTTRLGARDRAMMHLCFAGGLRVSELVGAALTDLVLGQAP 177

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           +L ++GKG K R  PL       +  +  +      L     +F    G+ +    F+  
Sbjct: 178 SLLVRGKGRKHRHFPLWKQTASDLRAWLAVR----GLTPAPEIFVNAEGRAMTRSGFEYV 233

Query: 247 IRQLRRYLGLP------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           + +               S + H LRHS A  +L    D+R +   LGH  + TT+ Y  
Sbjct: 234 LDKHVVKASQHCPSLAGRSVSPHQLRHSCAVIMLEATRDIRKVALWLGHADIRTTETYLR 293

Query: 301 VNSKNGGDWMMEI 313
           V++    + +  +
Sbjct: 294 VDAAQKLEAVEAV 306


>gi|319955952|ref|YP_004167215.1| integrase family protein [Nitratifractor salsuginis DSM 16511]
 gi|319418356|gb|ADV45466.1| integrase family protein [Nitratifractor salsuginis DSM 16511]
          Length = 284

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 92/306 (30%), Positives = 146/306 (47%), Gaps = 37/306 (12%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +   ++L  L   RG S+ T+ +YE   RQ L +     E K  I  I  L       
Sbjct: 1   MEEYVDDFLDYLFRIRGYSERTVATYELPLRQMLQYHRLKREGKQLILDIMPL------- 53

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
              +RR      R++ + LS ++SF++YL+ ++  +   +    ++K   +LP+ + E+ 
Sbjct: 54  ---RRRIASNTPRTVAKKLSAVRSFVRYLQDQRNLSIL-LEGDESVKVPRTLPKPIEERY 109

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              +++             D     IL LLYG GLRISE   L  + I  D+  +RI GK
Sbjct: 110 IREVLEA-----------ADPTERLILGLLYGMGLRISELAGLRREQI--DREWIRIHGK 156

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R +PL  +V + +  Y  L P        + LF   +  PL+    +  +++L R 
Sbjct: 157 GGKTRQLPLPQAVLQMLDHYLALHP------AGVYLFEKGKA-PLSAAQIRYRVQKLFRS 209

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    T H LRHSFATHLL +G  +  +  +LGH  ++TTQIYT + S      + E 
Sbjct: 210 RGI--KATPHQLRHSFATHLLDHGARISDVSELLGHASMATTQIYTQLGSSR---KLRE- 263

Query: 314 YDQTHP 319
           Y + HP
Sbjct: 264 YMKAHP 269


>gi|313903971|ref|ZP_07837351.1| integrase family protein [Eubacterium cellulosolvens 6]
 gi|313471120|gb|EFR66442.1| integrase family protein [Eubacterium cellulosolvens 6]
          Length = 361

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 54/309 (17%), Positives = 122/309 (39%), Gaps = 26/309 (8%)

Query: 32  SKLTLQSYECDTRQFLIFL-------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           S  T   Y    R F  FL          +   +T+  + +++  ++  ++   +  K  
Sbjct: 48  SANTTLKYAYAIRIFFDFLVKSNPVYKNRSIRDLTLDDLDKVTALDLEEYMDYLKAYKNS 107

Query: 85  DRS---------LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           + S         +K+ +S ++ F  Y  K ++   +  + +   K        L+  +  
Sbjct: 108 EDSDYVTNGEKGIKQKMSALRVFYAYYYKHEMIRTNPTVLVDMPKLHEKEIIRLDADEVA 167

Query: 136 TLVD----NVLLHTSHETKWID---ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
            L+D         + H+  + +    R++AI+ LL G G+R+SE + L  +++    + +
Sbjct: 168 DLLDFVESCGEELSPHQRSYWEKSKLRDTAIITLLLGTGIRVSECVGLDLEDVDFRNNGI 227

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRY 246
           ++  KG    +V     V  A+  Y +     +      +  LF   + + +N    +  
Sbjct: 228 KVFRKGGNEMMVYFGGEVESALKAYIETERAAITPQQGHEHALFYSAQRRRINVKSVENL 287

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI-YTNVNSKN 305
           +++    +      T H LR ++ T L    GD+  +  +LGH  ++TT+  Y  ++   
Sbjct: 288 VKKYTSRITSTKKITPHKLRSTYGTALYRETGDIYLVADVLGHKDVNTTKRHYAAMSDLR 347

Query: 306 GGDWMMEIY 314
                  ++
Sbjct: 348 RRSAAKAVH 356


>gi|332800312|ref|YP_004461811.1| integrase family protein [Tepidanaerobacter sp. Re1]
 gi|332698047|gb|AEE92504.1| integrase family protein [Tepidanaerobacter sp. Re1]
          Length = 285

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 64/296 (21%), Positives = 124/296 (41%), Gaps = 19/296 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +  Q +++ +++    S+ T+  YE +   F  FL+      +    I  ++  +I  
Sbjct: 3   LGQGIQEFIKYMKLIDR-SEQTITGYEKELIYFDSFLSVKHNCPV---YIEDVTLEDIED 58

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++  ++ + I   S  RS+  ++SF  Y  K+ IT ++    +  +K        L E++
Sbjct: 59  YLLDQKKRGIASASRSRSVYILRSFYNYCVKKDITAKNIASLIEPVKVKQKERGYLTEEE 118

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QG 192
              L   +                  +  ++  G R+SE + L   ++  ++  + I +G
Sbjct: 119 FNKLAVAIK----------QPVIRTAVETMFYTGGRMSEIIHLKLDDVNLEEKVIHITKG 168

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+   +   +  Y +      +       F       ++     R I++   
Sbjct: 169 KGGKARDIPINDKLYDILKNYIENIRDAKSSR----FFALKSTGKVSSSYVNRLIKEAAY 224

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            +GL    +AH LRHSF T+LL  G  + SIQ +LGH  L+ T  Y + +     D
Sbjct: 225 EVGLKKDVSAHILRHSFGTNLLEKGASVVSIQKLLGHANLAVTTRYLHQDMNKLSD 280


>gi|294776304|ref|ZP_06741787.1| integron integrase [Bacteroides vulgatus PC510]
 gi|294449844|gb|EFG18361.1| integron integrase [Bacteroides vulgatus PC510]
          Length = 366

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 128/291 (43%), Gaps = 30/291 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L  ++  S  T+++Y      F+ +             I +L   +I  +I   
Sbjct: 92  EGYLE-LLEQKRYSPSTIKTYRAYFSDFMEYHKGRN--------IDRLKVADINKYILYL 142

Query: 79  -RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +KI        ++ IK + + +K  K         +   K+  SLP  L+  +   +
Sbjct: 143 VNEKKISVSQQNMRINAIKFYYEQVKGGKRQYYG---GITRAKEYKSLPEVLSRNEVCRI 199

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +              + ++  ++ L+Y  GLR SE L+LTP++I+ ++  + I GKG K 
Sbjct: 200 LSC----------LSNRKHRCMISLIYSAGLRRSELLNLTPKDIISERMLVCIMGKGRKC 249

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGL 256
           R   L   + K + EY+           Q  LF G    +P +     + +++     G+
Sbjct: 250 RYSLLSEKLLKELREYF------KEYRPQKWLFEGETPGEPYSASALVKVLKEAASRAGI 303

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                 H LRHSFATHLL  G DLR+IQ +LGH  + TT IY +V S +  
Sbjct: 304 KHRVHVHMLRHSFATHLLEQGTDLRTIQELLGHNDIKTTSIYLHVTSTHKS 354


>gi|222111885|ref|YP_002554149.1| integron integrase [Acidovorax ebreus TPSY]
 gi|221731329|gb|ACM34149.1| integron integrase [Acidovorax ebreus TPSY]
          Length = 332

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 75/348 (21%), Positives = 140/348 (40%), Gaps = 65/348 (18%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIER----GLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           + P +     +++    L+++  ER      S  T Q+Y    R+F++F           
Sbjct: 2   DAPSVSRPPAVRQPPRLLESMR-ERIRVLHYSIRTEQAYVDWARRFILFHDKRHP----- 55

Query: 61  QTIRQLSYTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
              R++   E+ AF++     + +   +  ++ + I    K + ++ +        + + 
Sbjct: 56  ---REMGAPEVTAFLTHLAVERNVSASTQNQAKAAILFLYKEVLQQDLPWLD---EIVSA 109

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           +K+  LP  L +++   L+ +           +      +  LLYG G+RI EAL L  +
Sbjct: 110 RKARRLPVVLTQREVRELLMH-----------LQGTQWLVASLLYGTGMRILEALRLRVK 158

Query: 180 NIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILE-------------------------- 212
           ++  ++  L ++ GKG+K R+  L  ++   + E                          
Sbjct: 159 DVEFERRELIVREGKGNKDRVTVLPENLITPLREQMERARALHRKDLDAGLGAVWLPDAL 218

Query: 213 ----------YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
                     +     F   +    P     R   L     Q+ +    R  G+    T 
Sbjct: 219 AVKYANAATAWGWQYVFPSAVRSVDPRSGVQRRHHLLEQSVQKAVALAARRAGIDKPCTP 278

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           H LRHSFATH+L  G D+R++Q +LGH  +STT IYT+V +K G   +
Sbjct: 279 HVLRHSFATHMLQAGYDIRTVQELLGHKDVSTTMIYTHVLNKGGRGVL 326


>gi|91786616|ref|YP_547568.1| phage integrase [Polaromonas sp. JS666]
 gi|91695841|gb|ABE42670.1| phage integrase [Polaromonas sp. JS666]
          Length = 331

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 66/301 (21%), Positives = 124/301 (41%), Gaps = 21/301 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT- 80
           L++L  ER L+  T +SY     Q L F++    + +    +  +S   +R F+S   T 
Sbjct: 16  LEHLVSERNLAANTRRSYRDTMCQLLPFVSGRLHKAVDRLAVVDVSPQLVREFLSDVETH 75

Query: 81  QKIGDRSLKRSLSGIKSFLKY---LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +  G  +  + L+ I +  ++        I   + +  +   K + +    L++ +   L
Sbjct: 76  RGCGIATRNQRLAAIHALARFVGEHSPEHIAWCAQVRCVPYKKGTQASVPYLDKAEIDAL 135

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +        +       R+ A+L  LY  G R SEA  L   ++  DQ+++ I GKG K 
Sbjct: 136 L-----ACPNRRTEQGGRDYALLLFLYNTGARASEASELIVGDLHLDQASVDILGKGRKR 190

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG-- 255
           R  PL P+  + +                  +F    G+P         + +        
Sbjct: 191 RQCPLWPATVRELRALVGERSR------HEHVFLNRCGQPTTRFGVHALVERTAARAKDF 244

Query: 256 ----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
                    + H++RHS A+HLLS G D+ ++++ LGH  L TT +Y  ++ +     + 
Sbjct: 245 MPSLAMKRVSPHSIRHSTASHLLSAGVDINTVRAWLGHASLDTTNVYAEIDLEGKARALA 304

Query: 312 E 312
           +
Sbjct: 305 K 305


>gi|328957573|ref|YP_004374959.1| tyrosine recombinase XerC [Carnobacterium sp. 17-4]
 gi|328673897|gb|AEB29943.1| tyrosine recombinase XerC [Carnobacterium sp. 17-4]
          Length = 191

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 70/199 (35%), Positives = 100/199 (50%), Gaps = 12/199 (6%)

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P+   EK+   L +            +D RN AIL +LYG G+R+SE   +  ++I  + 
Sbjct: 2   PKFFYEKEMDALFE-----AVKGDGPLDFRNEAILEVLYGTGIRVSECSGIKLKDIDFEL 56

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGV 242
           S L I+GKG+K R VP       AI +Y +     L   +  I   LF    G P+    
Sbjct: 57  SVLLIRGKGNKERYVPFGHYAAVAIRDYMEKSRTPLMTKHKRIHDFLFVNHHGDPITATG 116

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +  + Q+ +   L      H LRHSFATHLL+NG D+R++Q +LGH  LS+TQIY +V 
Sbjct: 117 IEYVLNQVIKRSSLTSDIHPHMLRHSFATHLLNNGADMRTVQELLGHASLSSTQIYAHVT 176

Query: 303 SKNGGDWMMEIYDQTHPSI 321
                D + + Y Q HP  
Sbjct: 177 ----KDLLQKNYRQFHPRA 191


>gi|291545712|emb|CBL18820.1| Site-specific recombinase XerD [Ruminococcus sp. SR1/5]
          Length = 322

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 69/312 (22%), Positives = 130/312 (41%), Gaps = 29/312 (9%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           E + + EI + + L   + +L   +IE G S+ T+Q Y+      L  +           
Sbjct: 36  EADKM-EISNTDFL---EMFLDAKKIE-GCSERTIQYYKVTVEHLLSHIE---------T 81

Query: 62  TIRQLSYTEIRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           ++R+++  EIR +++  ++  K  + ++      I SF  +L++     +S +  +  +K
Sbjct: 82  SVRKITTEEIRTYLAEYQKNNKCSNVTVDNIRRNISSFFSWLEEEDYILKSPMKRIHKIK 141

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               +   + ++    L DN            + R+ AI+ LLY  G+R+ E ++L   +
Sbjct: 142 TKTVVKSVITDEGIERLRDNCK----------EIRDLAIIDLLYSTGIRVGELVNLNVDD 191

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I  +     + GKGDK R V      +  + EY        + N  L +        L  
Sbjct: 192 IDLEGRECIVYGKGDKERRVYFDAKAKVHLKEYIAHR---KDNNSALFVTLDAPHDRLKI 248

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              +  +R+L + + L      H  R + AT  +  G  +  +Q ILGH ++ TT  Y  
Sbjct: 249 SGVEIRLRELGKRIDLER-IHPHKFRRTMATRAIDKGMPIEQVQKILGHSQIDTTMQYAM 307

Query: 301 VNSKNGGDWMME 312
           VN  N      +
Sbjct: 308 VNQNNVKTSHQK 319


>gi|220935866|ref|YP_002514765.1| integron integrase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997176|gb|ACL73778.1| integron integrase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 323

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 74/314 (23%), Positives = 129/314 (41%), Gaps = 60/314 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           R  S  T Q+Y    R++++F                +   ++ AF++    Q+ +   +
Sbjct: 20  RHYSLRTEQAYTHWIRRYILFHGKRHP--------LDMGAPQVEAFLTHLAVQEDVAPST 71

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++L+GI    + +   ++        +   KK   LP  LN  +   L+         
Sbjct: 72  QNQALAGILFLYRDVLGIELPWLD---GVTRAKKPPRLPVVLNRDEVRALLAQ------- 121

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
               +D     +  L+YG GLR+ EAL L  +++  ++  + ++ GKG K R   L  ++
Sbjct: 122 ----LDGMYWLLASLMYGSGLRLMEALRLRVKDVDLERREVTVREGKGGKDRRTMLPGTL 177

Query: 207 RK----------------------------AILEYYDLCPFDLNLNIQLPLFRG------ 232
            +                            A+   Y     +L      P  +       
Sbjct: 178 VEPLTRQREKVAAIHALDRDNNLAAVYLPHALSRKYPNAGKELAWQFLFPASQPGIDPRS 237

Query: 233 --IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
              R   L+    QR I+   R  G+    ++HTLRHSFATHLL +G D+R++Q +LGH 
Sbjct: 238 GIRRRHHLHESAVQRAIKGAVRAAGILKPASSHTLRHSFATHLLEDGYDIRTVQELLGHS 297

Query: 291 RLSTTQIYTNVNSK 304
            + TTQIYT+V ++
Sbjct: 298 DVRTTQIYTHVLNR 311


>gi|330826233|ref|YP_004389536.1| integron integrase [Alicycliphilus denitrificans K601]
 gi|329311605|gb|AEB86020.1| integron integrase [Alicycliphilus denitrificans K601]
          Length = 332

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 71/319 (22%), Positives = 127/319 (39%), Gaps = 60/319 (18%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSL 88
             S  T Q+Y    R+F++F              R+L   ++ AF++     + +   + 
Sbjct: 30  HYSIRTEQAYVDWARRFILFHGKRHP--------RELGAPDVTAFLTHLAVERNVSASTQ 81

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            ++ + I    K + ++ +        + + +K   LP  L +++   L+ +        
Sbjct: 82  NQAKAAILFLYKEVLQQDLPWLD---EVVSARKPRRLPVVLTQREVRELLLH-------- 130

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVR 207
              +      +  LLYG G+RI EAL L  +++  ++  L ++ GKG+K R+  L  ++ 
Sbjct: 131 ---LQGTQWLVSSLLYGTGMRILEALRLRVKDVEFERRELIVREGKGNKDRVTVLPENLI 187

Query: 208 KAILE------------------------------------YYDLCPFDLNLNIQLPLFR 231
             + E                                    +     F   +    P   
Sbjct: 188 APLREQMERARMLHRKDLDAGLGAVWLPDALAVKYANAATAWGWQYVFPSAVRSVDPRSG 247

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
             R   +     Q+ +    R  G+    T H LRHSFATHLL  G D+R++Q +LGH  
Sbjct: 248 VERRHHMLEQSVQKAVALAARRAGIDKPCTPHVLRHSFATHLLQAGYDIRTVQELLGHKD 307

Query: 292 LSTTQIYTNVNSKNGGDWM 310
           +STT IYT+V +K G   +
Sbjct: 308 VSTTMIYTHVLNKGGRGVL 326


>gi|116255542|ref|YP_771375.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115260190|emb|CAK03294.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 331

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 60/316 (18%), Positives = 114/316 (36%), Gaps = 21/316 (6%)

Query: 10  VSFELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +S  L +  + +  Q L  +R +S  T+ SY    + FL F    T +  +   +     
Sbjct: 1   MSNPLPRLIERFFGQRLARQRNVSPHTIASYRDTFKLFLKFAHRRTGKFPSDLRLEDFDA 60

Query: 69  TEIRAFISKRRTQKI-GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS---NS 124
             + AF+    +++     +    L+ I+SF ++L   +      I  +  +        
Sbjct: 61  ELVVAFLDDLDSERHASPATYNLRLTAIRSFFRFLAFEEPAYSGQIQRILAIPGKIGSKR 120

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
             + L   +   ++            W+  R+  ++      G+R+SE + L    +   
Sbjct: 121 EVQFLTRSEIEAIL-----SAPDRRTWVGRRDYVLMLTAVQTGMRLSELVGLDRSAVTIG 175

Query: 185 QS-TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
               +R  GKG K R  P+   +   +  + D    +  +     LF  + G  ++P   
Sbjct: 176 TGAHIRCFGKGRKERTTPITRMLNVTLKAWLD----EPPVGNGNALFPTVHGGRMSPDAV 231

Query: 244 QRYIRQLRRYLGL------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           Q  + +                 + H LRHS A  LL  G D   I   LGH    +TQ 
Sbjct: 232 QYLLAKYVLTASKGCSSLRSKRISPHVLRHSAAMELLDAGVDSTVISLWLGHESTRSTQP 291

Query: 298 YTNVNSKNGGDWMMEI 313
           Y + +       + +I
Sbjct: 292 YLHAHLAIKEAALAKI 307


>gi|300112795|ref|YP_003759370.1| integron integrase [Nitrosococcus watsonii C-113]
 gi|299538732|gb|ADJ27049.1| integron integrase [Nitrosococcus watsonii C-113]
          Length = 327

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/317 (22%), Positives = 122/317 (38%), Gaps = 60/317 (18%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           R  S  T Q+Y    ++F+ F                +   EI AF++    +  +   +
Sbjct: 23  RHYSIRTEQAYLGWIKRFIFFHGKRHPG--------DMGKAEISAFLTHLAIKGKVAAST 74

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++L+ I    + + KR +        +   KK + LP      +   +     L    
Sbjct: 75  QNQALNAILFLYREVLKRDVGWLD---EVERAKKPSRLPVVFTPNEVRKV-----LALLP 126

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
           + KW+      +  LLYG GLR+ E + L  ++       + ++ GKG K  +  L   +
Sbjct: 127 QGKWV------MASLLYGSGLRLMECMRLRVEDADFHYHQITVRDGKGRKDWVTVLPKKL 180

Query: 207 RK----------------------------AILEYYDLCPFDLNLNIQLPLFRG------ 232
            K                            A+ + Y     +       P  +       
Sbjct: 181 FKPLQVQLKTVKALHQQDLREGCGAVYLPYALEKKYPNANREFGWPYVFPACKRAIDPSS 240

Query: 233 --IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +R   L+    Q+ ++   R  G+    + HT RHSFATHLL NG D+R+IQ +LGH 
Sbjct: 241 GVVRRHHLSETALQQAVKNAIRKAGINKPGSCHTFRHSFATHLLENGYDIRTIQELLGHK 300

Query: 291 RLSTTQIYTNVNSKNGG 307
            ++TT IYT+V  + G 
Sbjct: 301 DVNTTMIYTHVLERGGR 317


>gi|53712683|ref|YP_098675.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52215548|dbj|BAD48141.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 383

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 129/292 (44%), Gaps = 30/292 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L  ++  S  T+++Y      F+ +             I +L   +I  +I   
Sbjct: 109 KGYLE-LLEQKRYSPSTVKTYRAYFSDFMEYHKGRN--------IDRLKVPDINKYILYL 159

Query: 79  -RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +KI        ++ IK + + +K  K         +   K+  SLP  L++ +   +
Sbjct: 160 VNEKKISVSQQNMRINAIKFYYEQVKGGKRQYYG---GITRAKEYKSLPEVLSKNEIKRI 216

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +  +           + ++  ++ L+Y  GLR SE L+LTPQ+I  +  ++RI GKG K 
Sbjct: 217 LAQI----------SNIKHHCMISLVYSAGLRRSELLNLTPQDINSETMSVRIMGKGKKC 266

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGL 256
           R   L P + + +  Y+           Q  LF G    +  +     + +++     G+
Sbjct: 267 RYSLLSPKLLEELRHYFR------EYRPQKWLFEGETPGEQYSASALVKVLKEAAHRAGI 320

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                 H LRHSFATHLL  G DL +IQ +LGH  + TT IY +V+S +   
Sbjct: 321 KHRVHVHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTTTIYLHVSSAHKAK 372


>gi|85707507|ref|ZP_01038583.1| putative integrase/recombinase [Roseovarius sp. 217]
 gi|85667964|gb|EAQ22849.1| putative integrase/recombinase [Roseovarius sp. 217]
          Length = 313

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 129/313 (41%), Gaps = 21/313 (6%)

Query: 13  ELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            L      ++   L  +RG S  + ++Y    +    F A       +  +I QL    I
Sbjct: 3   ALAPAITQFMQDYLPRQRGFSAHSSETYAHAFKLLFQFAARRVGSSPSQLSIEQLDAPLI 62

Query: 72  RAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN---SLPR 127
            AF+    T +  G  S    L+ IKSF+++++ +     + +  +R +        L +
Sbjct: 63  LAFLDHLETDRGNGATSRNARLAAIKSFMRFVEYQYPALLAQVAQIRAIPTKRCENKLVQ 122

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS- 186
            L++ +   +     L+    T  + AR+ A+++L +  GLR+SE +     +++  Q+ 
Sbjct: 123 HLSKDEVQAV-----LNAPDVTTRLGARDRAMMHLCFAGGLRVSELVGAALTDLVLGQAP 177

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           +L ++GKG K R  PL       +  +  +      L     +F    G+ +    F+  
Sbjct: 178 SLLVRGKGRKHRHFPLWKQTASDLRAWLAVR----GLTPAPEIFVNAEGRAMTRSGFEYV 233

Query: 247 IRQLRRYLGLP------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           + +               S + H LRHS A  +L    D+R +   LGH  + TT+ Y  
Sbjct: 234 LDKHVVKASQHCPSLAGRSVSPHQLRHSCAVIMLEATRDIRKVALWLGHADIRTTETYLR 293

Query: 301 VNSKNGGDWMMEI 313
           V++    + +  +
Sbjct: 294 VDAAQKLEAVEAV 306


>gi|169826684|ref|YP_001696842.1| hypothetical protein Bsph_1102 [Lysinibacillus sphaericus C3-41]
 gi|168991172|gb|ACA38712.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 238

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 56/253 (22%), Positives = 108/253 (42%), Gaps = 18/253 (7%)

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
            + +   ++ ++  R    +   SL   +  +KS  ++  +   T ++    ++  K   
Sbjct: 2   NEFNTDRLKEYLI-RSGDHLKPSSLGHRIRCVKSLFRWSHEEGYTLKNPAAKLKEPKLGK 60

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            +P+ L+E +   L +                  A+   +Y  G RI E + L  ++I  
Sbjct: 61  RIPKFLSEVEIEHLREAC----------QTTMEKALFEFMYSTGCRIGEVVKLNREDIDF 110

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK--PLNPG 241
             +++ +QGKGDK R V         +  Y      D   + +  LF   R     ++  
Sbjct: 111 QSNSVIVQGKGDKEREVYFNTRCSIWLKRYL-----DEREDREPCLFITDRRPKRRMSID 165

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             +  I+++     +  S   H LRHS+ATH+++NG  +  IQS+LGH +  TT+IY  +
Sbjct: 166 NLRYIIKRISNRASIKKSIHPHQLRHSYATHMINNGAPIDVIQSLLGHEKSETTKIYAQL 225

Query: 302 NSKNGGDWMMEIY 314
           + K   D   + +
Sbjct: 226 SGKLRQDLYSKYF 238


>gi|169826676|ref|YP_001696834.1| hypothetical protein Bsph_1094 [Lysinibacillus sphaericus C3-41]
 gi|168991164|gb|ACA38704.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 280

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 64/289 (22%), Positives = 125/289 (43%), Gaps = 29/289 (10%)

Query: 17  ERQNWLQNLEIER--GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +   +++  + E    L+  T++ Y+   +Q          +  T +   +++  +IR +
Sbjct: 4   DINEFIEKFKEEYMYRLAPRTIRGYQLSVKQL---------QDYTEKPFNKITKKDIRHW 54

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +     +     S+K  L G+K+F +Y     +   +   ++   K + +LPR L++KQ 
Sbjct: 55  MMVLNEKGYKQNSIKNKLIGLKTFYQYCFDEGLMIINPAKDIPFPKVAETLPRYLSKKQL 114

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGK 193
             L+++V                 I+ +LY  G+RISE + +  ++I   + +++I +GK
Sbjct: 115 TCLLEHVCER---------LYERTIIEVLYATGVRISELVKIKKEDINWSERSIQILEGK 165

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRR 252
           G++ RIV       + +  Y +     L       +F   +   +          +   +
Sbjct: 166 GNRSRIVLFNLDCAQHLETYLNSRTDKL-----PYVFVDKKETRMIRSREINTLFQFYSK 220

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            LG     T H LRH+FA HL   G  L  IQ +LGH    +TQ+Y  +
Sbjct: 221 QLG--FRVTPHMLRHTFAAHLAERGMPLECIQQLLGHETTHSTQLYARL 267


>gi|160880332|ref|YP_001559300.1| integrase family protein [Clostridium phytofermentans ISDg]
 gi|160428998|gb|ABX42561.1| integrase family protein [Clostridium phytofermentans ISDg]
          Length = 350

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 72/326 (22%), Positives = 132/326 (40%), Gaps = 25/326 (7%)

Query: 13  ELLKERQNWLQNL--EIERGLSKLTLQSYECDTRQFLIFLAFYTE-------EKITIQTI 63
           ELL +   WL++    IE+     T  +Y  D + FL FL            ++I    +
Sbjct: 20  ELLTQLPPWLKDFFRGIEQSTEPRTRIAYAIDLQTFLEFLQSQNPSFEGKPIKEIPRDVL 79

Query: 64  RQLSYTEIRAFISKRRTQKIG--------DRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
             L  T+I  ++   +  K          DR++KR LS +++   Y  K KI  E+ +L 
Sbjct: 80  TSLKSTDIEEYLEHLKYYKNAEGKEFINNDRAMKRKLSTLRTMYSYYHKNKIIDENPVLQ 139

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR------NSAILYLLYGCGLR 169
           +   K        L   +   L+D V   +                + A++ LL G G+R
Sbjct: 140 VDMPKIHEKAIVRLEINEVAELLDVVETGSKLTDTQKVFHEKNKVRDLALMTLLLGTGIR 199

Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLP 228
           +SE + L   ++  D   +++  KG     V     VR A+L Y D     + ++  +  
Sbjct: 200 VSECVGLDLTDVDFDNDRIKVVRKGGYESYVYFGEEVRDALLSYMDERDQIIAVDGHENA 259

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LF   R   ++    +  +++  + +      T H LR ++ T L    GD+  +  +LG
Sbjct: 260 LFLSSRRSRISVRNVEVLVKKYAQTVTTLKKITPHKLRSTYGTSLYQETGDIYLVADVLG 319

Query: 289 HFRLSTT-QIYTNVNSKNGGDWMMEI 313
           H  ++TT + Y  +  +       ++
Sbjct: 320 HRDVNTTKKHYAAIEDERRRSARDKV 345


>gi|313681427|ref|YP_004059165.1| integrase family protein [Sulfuricurvum kujiense DSM 16994]
 gi|313154287|gb|ADR32965.1| integrase family protein [Sulfuricurvum kujiense DSM 16994]
          Length = 282

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 85/307 (27%), Positives = 142/307 (46%), Gaps = 38/307 (12%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL ++++ +L+ L+  RG S LT++SY     + L F        +    +  L      
Sbjct: 5   ELYRQKEAFLKYLDTIRGYSPLTIRSYNDAIDEMLTFAEMDASSNLLSINLMPL------ 58

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
               + +   +  +S+   LS I+SF+KYL+ +  T E  +    ++K   +LP+ +  +
Sbjct: 59  ----RLKISSLKAKSIAAKLSAIRSFVKYLRSQGKTVE--LRGDESIKTPKTLPKPITHE 112

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q L  +       +             + LLY  GLRISE   L   +I   +   RI G
Sbjct: 113 QILHALQYAEPQAA-----------LAITLLYTMGLRISELTHLRLSDI--SEGWSRIHG 159

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P++ ++R  + EY         +N        ++G+ L+    +  I +   
Sbjct: 160 KGSKERDIPMMDNIRTMVQEYQ-------KINPSREYVFELKGEKLSENSLRYTIIKAFA 212

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            +GL    T H LRH++AT LL+NG  +  +  +LGH  ++TTQIYT +    G    ME
Sbjct: 213 KVGL--KVTPHQLRHTYATELLNNGARIADVSELLGHASMATTQIYTKL----GNALKME 266

Query: 313 IYDQTHP 319
            Y Q+HP
Sbjct: 267 HYLQSHP 273


>gi|149370706|ref|ZP_01890395.1| tyrosine type site-specific recombinase [unidentified eubacterium
           SCB49]
 gi|149356257|gb|EDM44814.1| tyrosine type site-specific recombinase [unidentified eubacterium
           SCB49]
          Length = 284

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 81/295 (27%), Positives = 139/295 (47%), Gaps = 33/295 (11%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L + + W++    E+ LS  T+ +Y      FL ++  +   ++  + +R+ +Y  I   
Sbjct: 14  LIQFKKWME----EQRLSHNTIMTYSNAVSLFLNYIVKHGTTEMNEEWVRRFNYDYII-- 67

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
                  +       + +SG+K +L++   R +     + N     K  +LP  L++++ 
Sbjct: 68  -----KNRFSISYQNQCISGVKKYLEF---RGLAVT--LENYERPDKGKTLPAVLSKQEV 117

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-K 193
             L+D +           + ++  +L L+Y  GLRI EALSL P  I   +  + I+G K
Sbjct: 118 KRLLDGIK----------NLKHKTLLSLVYSSGLRIGEALSLRPTAIDSTRKLIFIEGAK 167

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R V L   + + + +YY +         +  LF G  G   +    +   +   + 
Sbjct: 168 GKKDRYVLLSSKLLEDLRKYYTVY------RPKTYLFEGRSGTMYSASSARAVFKSAAKR 221

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            G+      HTLRHSFATHLL NG DLR IQ +LGH    TT IYT+V++++  +
Sbjct: 222 AGITKEVRLHTLRHSFATHLLENGTDLRYIQQLLGHQSPKTTMIYTHVSTRSLQN 276


>gi|78045063|ref|YP_359695.1| phage integrase family site specific recombinase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77997178|gb|ABB16077.1| site-specific recombinase, phage integrase family [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 320

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 69/328 (21%), Positives = 131/328 (39%), Gaps = 31/328 (9%)

Query: 1   MEGNN---LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK 57
           M  +N   LP  +          ++   E E G S  T+  Y     +F        E  
Sbjct: 1   MPKSNVLRLPLSLKITWQDLLDEFILVKEAE-GRSARTIHDYRFHIERFFNRFPHALE-- 57

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
                    SYT +R  + K  T+K    +  + L+ +K+F  +  K      +    ++
Sbjct: 58  ---------SYTSLRQSVLKYFTEKASPSTRNKRLAHLKAFFSWCAKEGYIPANPAEGIK 108

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             K+  +  R ++ ++   L+         +  +   R+  ++ +    G+R  E L + 
Sbjct: 109 RAKEDITNIRHVSLEEVKKLL-----QQPDKKTYTGLRDYCLMLVQIDTGVRPGELLQVR 163

Query: 178 PQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
             ++  +   +RI+    K    R + + P   + I  +  + P   +    +PLF    
Sbjct: 164 GSDLSLESREIRIRPEVAKTRIGRTLIITPFTAQQIARFLRIRPE--HWGDDVPLFASEN 221

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G  LN   + + +RQ  +  G+    T + LRH+FA   L  GGD  S+Q ILGH  L+ 
Sbjct: 222 GITLNENDWAKRVRQYCKKAGV--KVTPYGLRHTFAIEFLKAGGDPFSLQRILGHTDLTM 279

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           T+ Y  ++     D + E++++  P   
Sbjct: 280 TRRYVRLSQ----DDIKEVHEKASPVQK 303


>gi|294646923|ref|ZP_06724544.1| integron integrase [Bacteroides ovatus SD CC 2a]
 gi|294810786|ref|ZP_06769432.1| integron integrase [Bacteroides xylanisolvens SD CC 1b]
 gi|292637868|gb|EFF56265.1| integron integrase [Bacteroides ovatus SD CC 2a]
 gi|294441974|gb|EFG10795.1| integron integrase [Bacteroides xylanisolvens SD CC 1b]
          Length = 368

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 129/292 (44%), Gaps = 30/292 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L  ++  S  T+++Y      F+ +             I +L   +I  +I   
Sbjct: 94  KGYLE-LLEQKRYSPSTVKTYRAYFSDFMEYHEGRN--------IDRLKVPDINKYILYL 144

Query: 79  -RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +KI        ++ IK + + +K  K         +   K+  SLP  L++ +   +
Sbjct: 145 VNEKKISVSQQNMRINAIKFYYEQVKGGKRQYYG---GITRAKEYKSLPEVLSKNEIKRI 201

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +  +           + ++  ++ L+Y  GLR SE L+LTPQ+I  +  ++RI GKG K 
Sbjct: 202 LAQI----------SNIKHHCMISLVYSAGLRRSELLNLTPQDINSETMSVRIMGKGKKC 251

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGL 256
           R   L P + + +  Y+           Q  LF G    +  +     + +++     G+
Sbjct: 252 RYSLLSPKLLEELRHYFR------EYRPQKWLFEGETPGEQYSASALVKVLKEAAHRAGI 305

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                 H LRHSFATHLL  G DL +IQ +LGH  + TT IY +V+S +   
Sbjct: 306 KHRVHVHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTTTIYLHVSSAHKAK 357


>gi|293371016|ref|ZP_06617558.1| integron integrase [Bacteroides ovatus SD CMC 3f]
 gi|292633946|gb|EFF52493.1| integron integrase [Bacteroides ovatus SD CMC 3f]
          Length = 368

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 129/292 (44%), Gaps = 30/292 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L  ++  S  T+++Y      F+ +             I +L   +I  +I   
Sbjct: 94  KGYLE-LLEQKRYSPSTVKTYRAYFSDFMEYHKGRN--------IDRLKVPDINKYILYL 144

Query: 79  -RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +KI        ++ IK + + +K  K         +   K+  SLP  L++ +   +
Sbjct: 145 VNEKKISVSQQNMRINAIKFYYEQVKGGKRQYYG---GITRAKEYKSLPEVLSKNEIKRI 201

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +  +           + ++  ++ L+Y  GLR SE L+LTPQ+I  +  ++RI GKG K 
Sbjct: 202 LAQI----------SNIKHHCMISLVYSAGLRRSELLNLTPQDINSETMSVRIMGKGKKC 251

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGL 256
           R   L P + + +  Y+           Q  LF G    +  +     + +++     G+
Sbjct: 252 RYSLLSPKLLEELRHYFR------EYRPQKWLFEGETPGEQYSASALVKVLKEAAHRAGI 305

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                 H LRHSFATHLL  G DL +IQ +LGH  + TT IY +V+S +   
Sbjct: 306 KHRVHVHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTTTIYLHVSSAHKAK 357


>gi|189460431|ref|ZP_03009216.1| hypothetical protein BACCOP_01072 [Bacteroides coprocola DSM 17136]
 gi|189462397|ref|ZP_03011182.1| hypothetical protein BACCOP_03083 [Bacteroides coprocola DSM 17136]
 gi|189430903|gb|EDU99887.1| hypothetical protein BACCOP_03083 [Bacteroides coprocola DSM 17136]
 gi|189432863|gb|EDV01848.1| hypothetical protein BACCOP_01072 [Bacteroides coprocola DSM 17136]
          Length = 368

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 72/287 (25%), Positives = 136/287 (47%), Gaps = 30/287 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L  ++  S  T+++Y+     F+ +           Q +  L+  +I +++   
Sbjct: 94  RGYLE-LLEQKRYSLSTIKAYKIYFSDFMEYHKG--------QDLDLLTVEDINSYMLHM 144

Query: 79  -RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            + + I        ++ IK + + ++K K         +   K+  +LP  L+ ++  ++
Sbjct: 145 VKEKHISATQQNMRINAIKFYYEKVRKGKRQYYG---GIARAKEYKALPEVLSREEMKSI 201

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                       +  + ++  ++ L+Y  GLR SE L+LTPQ+I+ ++  +RI GKG K 
Sbjct: 202 F----------AQLSNRKHRCMISLIYSAGLRRSELLNLTPQDIISERMLIRIAGKGKKC 251

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGL 256
           R   L   +   +  YY           Q  LF G + G+  +P    + +++  R  G+
Sbjct: 252 RYSLLSEKLLNELRAYYR------EYRPQKWLFEGEQAGEQYSPSALVKILKEAARKAGI 305

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
                 H LRH+FATHLL  G DLR+IQ ++GH  + TT IY +V++
Sbjct: 306 KHRVHLHMLRHTFATHLLEQGTDLRTIQELMGHTDIKTTAIYLHVSN 352


>gi|217968814|ref|YP_002354048.1| integrase [Thauera sp. MZ1T]
 gi|217506141|gb|ACK53152.1| integrase family protein [Thauera sp. MZ1T]
          Length = 332

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 70/306 (22%), Positives = 112/306 (36%), Gaps = 20/306 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +   L  +R  S  T+ SY    R  L F       + +     Q+    I AF+ +
Sbjct: 12  QRFFTDRLMQQRRASPHTIGSYRDTFRLLLRFAQMRLGRQPSQLAFEQIDAPLIAAFLDE 71

Query: 78  RRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI---LNMRNLKKSNSLPRALNEKQ 133
            +  + I  RS    L+ I+SF +Y      T    I   L + + + + +    L   +
Sbjct: 72  LQDKRGITARSRNLRLTAIRSFFRYAAFEAPTHAEQIQRVLAIPSQRFTRTQVGFLTRPE 131

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLRIQG 192
              L     L       W   R+ A+L L    GLR+SE  ++    ++      + + G
Sbjct: 132 VDAL-----LAAPDRQTWSGRRDHALLLLAVQAGLRLSELTAMRRDTVILGSGAHVLVMG 186

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R  PL       +  +      ++  N    +F   RG  L+    Q  + +   
Sbjct: 187 KGRKERATPLTRQTAAVLNAWLK----EIPANPDATIFPSARGTRLSADGVQYLLAKHVA 242

Query: 253 YLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
                         T H LRH+ A  LL  G D   I   LGH  + TTQIY + N    
Sbjct: 243 VAARSCPSLAQKRVTPHVLRHTTAMELLQAGVDRAVIALWLGHESVETTQIYLDANLAIK 302

Query: 307 GDWMME 312
              +  
Sbjct: 303 EQALAR 308


>gi|254450128|ref|ZP_05063565.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264534|gb|EDY88804.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 315

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 124/293 (42%), Gaps = 30/293 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ  ++++ I R + + T + +    + F  FL          ++    +  E+RA+   
Sbjct: 30  RQRMIEDMRI-RAIGETTQKGHIRAIKHFATFLG---------RSPDTATPDELRAYQLH 79

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
               ++   +    +  ++ F      R+         M+  +K   LP  L+ ++   L
Sbjct: 80  MTDTEVTTSTFNTRIVSLRLFFGVTCGREEMK----RYMQFRRKPRRLPVVLSVEEIGDL 135

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
           +  V                A L + YG GLR SE   L   +I   +  + + +GK  K
Sbjct: 136 LAAV--------PGPGLTYRAALGISYGAGLRASEVCHLKVVDIDSGRMLIHVDEGKNGK 187

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLG 255
            R   L P +   + EY+      L    +  LF G  +  PL+P    R     +   G
Sbjct: 188 DRKAMLSPGLLDLLREYW------LEARPEGWLFPGKPKINPLSPRQLNRAFTSAKHMAG 241

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +    T HTLRHSFATHLL  G D+R IQ +LGH +LSTT  YT+V +K   +
Sbjct: 242 INKPATLHTLRHSFATHLLEAGTDVRVIQVLLGHSKLSTTARYTHVAAKTIRN 294


>gi|317481288|ref|ZP_07940359.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902621|gb|EFV24504.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 366

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 127/291 (43%), Gaps = 30/291 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L  ++  S  T+++Y      F+ +             I  L   +I  +I   
Sbjct: 92  EGYLE-LLEQKRYSPSTIKTYRAYFSDFMEYHKGRN--------IDHLKVADINKYILYL 142

Query: 79  -RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +KI        ++ IK + + +K  K         +   K+  SLP  L+  +   +
Sbjct: 143 VNEKKISVSQQNMRINAIKFYYEQVKGGKRQYYG---GITRAKEYKSLPEVLSRNEVARI 199

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +              + ++  ++ L+Y  GLR SE L+LTP++I+ ++  +RI GKG K 
Sbjct: 200 LAC----------LSNRKHRCMISLIYSAGLRRSELLNLTPKDIISERMLVRIMGKGRKC 249

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGL 256
           R   L   + K + EY+           Q  LF G    +  +     + +++     G+
Sbjct: 250 RYSLLSEKLLKELREYF------KEYRPQKWLFEGETPGEQYSASALVKILKEAASRAGI 303

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                 H LRHSFATHLL  G DLR+IQ +LGH  + TT IY +V S +  
Sbjct: 304 KHRVHVHMLRHSFATHLLEQGTDLRTIQELLGHNDIKTTSIYLHVTSAHKS 354


>gi|254450213|ref|ZP_05063650.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264619|gb|EDY88889.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 315

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 123/293 (41%), Gaps = 30/293 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ  ++++ I R + + T + +    + F  FL          ++    +  E+RA+   
Sbjct: 30  RQRMIEDMRI-RAIGETTQKGHIRAIKHFATFLG---------RSPDTATPDELRAYQLH 79

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +   +    +  ++ F      R+         M+  +K   LP  L+ ++   L
Sbjct: 80  MTDTDVTTSTFNTRIVSLRLFFGVTCGREEMK----RYMQFRRKPRRLPVVLSVEEIGDL 135

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
           +  V                A L + YG GLR SE   L   +I   +  + + +GK  K
Sbjct: 136 LAAV--------PGPGLTYRAALGISYGAGLRASEVCHLKVVDIDSGRMLIHVDEGKNGK 187

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLG 255
            R   L P +   + EY+      L    +  LF G  +  PL+P    R     +   G
Sbjct: 188 DRKAMLSPGLLDLLREYW------LEARPEGWLFPGKPKINPLSPRQLNRAFTSAKHMAG 241

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +    T HTLRHSFATHLL  G D+R IQ +LGH +LSTT  YT+V +K   +
Sbjct: 242 INKPATLHTLRHSFATHLLEAGTDVRVIQVLLGHSKLSTTARYTHVAAKTIRN 294


>gi|167752616|ref|ZP_02424743.1| hypothetical protein ALIPUT_00870 [Alistipes putredinis DSM 17216]
 gi|167659685|gb|EDS03815.1| hypothetical protein ALIPUT_00870 [Alistipes putredinis DSM 17216]
          Length = 368

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 129/292 (44%), Gaps = 30/292 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L  ++  S  T+++Y      F+ +             I +L   +I  +I   
Sbjct: 94  KGYLE-LLEQKRYSPSTVKTYRAYFSDFMEYHKGRN--------IDRLKVPDINKYILYL 144

Query: 79  -RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +KI        ++ IK + + +K  K         +   K+  SLP  L++ +   +
Sbjct: 145 VNEKKISVSQQNMRINAIKFYYEQVKGGKRQYYG---GITRAKEYKSLPEVLSKNEIKRI 201

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +  +           + ++  ++ L+Y  GLR SE L+LTPQ+I  +  ++RI GKG K 
Sbjct: 202 LAQI----------SNIKHHCMISLVYSAGLRRSELLNLTPQDINSETMSVRIMGKGKKC 251

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGL 256
           R   L P + + +  Y+           Q  LF G    +  +     + +++     G+
Sbjct: 252 RYSLLSPKLLEELRHYFR------EYRPQKWLFEGETPGEQYSASALVKVLKEAAHRAGI 305

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                 H LRHSFATHLL  G DL +IQ +LGH  + TT IY +V+S +   
Sbjct: 306 KHRVHVHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTTTIYLHVSSAHKAK 357


>gi|320321405|gb|EFW77525.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320331161|gb|EFW87128.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330882731|gb|EGH16880.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 320

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 129/290 (44%), Gaps = 28/290 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            W  NL+  R     T ++Y+ D   F  F+        +    RQ++ + + A+ +   
Sbjct: 31  EWFANLDNTR-----TRRAYQNDLTDFSAFIGL-----ASADDFRQVTRSHVLAWRANLE 80

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTE-SNILNMRNLKKSNSLPRALNEKQALTLV 138
            + +   +++R L+ + S   +L +       + +  ++  K  +      NE +   L 
Sbjct: 81  QRGLAGATIRRKLAALASLFDHLLESNAIAGGNPVHGVKRPKIES------NEGKTPALG 134

Query: 139 DNV---LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGK 193
           D+    LL    E+     R+ A+L +L   GLR  EA  L   +I + +    L+I GK
Sbjct: 135 DHQAKALLEAPDESTLKGLRDRAMLAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGK 194

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP----LNPGVFQRYIRQ 249
           G K+R +PL P     I  Y +     L+ + ++PLF  +RGK     ++       +  
Sbjct: 195 GGKVRYLPLHPVAAGRIHWYLERSGHHLD-DKKVPLFISLRGKSTGASISANGIYTVVEA 253

Query: 250 LRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             +  G+ +     H LR + AT+ L +  D+  +Q+ LGH  +STT+IY
Sbjct: 254 YTKKAGIEVAGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303


>gi|121595668|ref|YP_987564.1| integron integrase [Acidovorax sp. JS42]
 gi|120607748|gb|ABM43488.1| integron integrase [Acidovorax sp. JS42]
          Length = 332

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 75/348 (21%), Positives = 139/348 (39%), Gaps = 65/348 (18%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIER----GLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           + P +     +++    L+++  ER      S  T Q+Y    R+F++F           
Sbjct: 2   DAPSVSRPPAVRQPPRLLESMR-ERIRVLHYSIRTEQAYVDWARRFILFHDKRHP----- 55

Query: 61  QTIRQLSYTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
              R++   E+ AF++     + +   +  ++ + I    K + +  +        + + 
Sbjct: 56  ---REMGAPEVTAFLTHLAVERNVSASTQNQAKAAILFLYKEVLQHDLPWLD---EIVSA 109

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           +K+  LP  L +++   L+ +           +      +  LLYG G+RI EAL L  +
Sbjct: 110 RKARRLPVVLTQREVRELLMH-----------LQGTQWLVASLLYGTGMRILEALRLRVK 158

Query: 180 NIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILE-------------------------- 212
           ++  ++  L ++ GKG+K R+  L  ++   + E                          
Sbjct: 159 DVEFERRELIVREGKGNKDRVTVLPENLITPLREQMERARALHRKDLDAGLGAVWLPDAL 218

Query: 213 ----------YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
                     +     F   +    P     R   L     Q+ +    R  G+    T 
Sbjct: 219 AVKYANAATAWGWQYVFPSAVRSVDPRSGVQRRHHLLEQSVQKAVALAARRAGIDKPCTP 278

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           H LRHSFATH+L  G D+R++Q +LGH  +STT IYT+V +K G   +
Sbjct: 279 HVLRHSFATHMLQAGYDIRTVQELLGHKDVSTTMIYTHVLNKGGRGVL 326


>gi|320321496|gb|EFW77605.1| hypothetical protein PsgB076_27145 [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 319

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 70/277 (25%), Positives = 120/277 (43%), Gaps = 24/277 (8%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T ++Y+ D   F  F+     ++      R ++   + A+ ++  T+ +   +++R L
Sbjct: 39  PRTRRAYQNDLEDFCSFVGLTGADE-----FRAVTRAHVLAWRAQLETRGLAGATIRRKL 93

Query: 93  SGIKSFLKYLKKRKITTE-SNILNMRNLKKSN---SLPRALNEKQALTLVDNVLLHTSHE 148
           + + S   +L +       + +  ++  K        P AL + QA  L+D         
Sbjct: 94  AALASLFDHLLENNAVAGGNPVHGVKRPKIETNEGKTP-ALGDDQAKRLLD-----APDT 147

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSV 206
                 R+ AIL +L   GLR  EA  LT  ++++ +    LR+ GKG KIR +PL P  
Sbjct: 148 ETVKGVRDRAILAVLLYHGLRREEAARLTTSDLVERRGIKHLRVHGKGKKIRFLPLHPVA 207

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLP-LSTT 261
            + I  Y +L           PLFR +RGK     +        +    R  G+      
Sbjct: 208 AERIYAYLEL--DSARDTSSGPLFRSVRGKTTGAGVTANGLYTVVAHWARVAGIEVDGLG 265

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            H LR + AT+ L +  D+  +Q  LGH  +STT++Y
Sbjct: 266 VHGLRATAATNALDHDADIAKVQMWLGHANISTTRLY 302


>gi|319789925|ref|YP_004151558.1| integrase family protein [Thermovibrio ammonificans HB-1]
 gi|317114427|gb|ADU96917.1| integrase family protein [Thermovibrio ammonificans HB-1]
          Length = 271

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 68/305 (22%), Positives = 133/305 (43%), Gaps = 39/305 (12%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L +  + +L     E+ LS  T++ Y  D   F+        + +  + +  +   ++ 
Sbjct: 2   KLSEAVELFLNF--KEKELSPRTVKEYRNDLNLFI--------KTVGDKDVSAVKTADLM 51

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKKSNSLPRALNE 131
            F  +          + R +S + +F  +L   +I  ++ +  ++R  K    +P AL  
Sbjct: 52  LFRGRM---GCSPSLINRRISALNTFFNFLVDMEIIDKNPVKPSLRIKKVKQRVPEALTP 108

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLR 189
           ++   +++          +    R+  +   +  CGLRISE LSLT ++I++ +    L+
Sbjct: 109 EEVEKVLEA--------ARKRGERDYLMFKTILYCGLRISELLSLTKESIVEFKGRPVLK 160

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG K R +PL  S  + ++ Y +                G +  PL+    +    +
Sbjct: 161 VIGKGGKERFIPLSRSFARELISYAERVE-------------GEKLFPLSYQGAKYIFNR 207

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           +R   G+P     H LRH+FAT L+  G D+R IQ+ LGH   +T+  Y  V  +     
Sbjct: 208 VRDETGVP--IHPHKLRHTFATVLVDRGVDIRVIQAFLGHASPNTSARYAKVRDELMFKV 265

Query: 310 MMEIY 314
           +  ++
Sbjct: 266 VDSVF 270


>gi|30250123|ref|NP_842193.1| integron integrase [Nitrosomonas europaea ATCC 19718]
 gi|30139230|emb|CAD86100.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Nitrosomonas europaea ATCC 19718]
          Length = 323

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 74/345 (21%), Positives = 137/345 (39%), Gaps = 68/345 (19%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M   N P     +LL + ++ ++     +  S  T   Y    ++F++F      +++  
Sbjct: 1   MGNTNTP----PKLLDQVRDRIR----IKHYSLRTETQYVQWIKRFILFHGKRHPQEMG- 51

Query: 61  QTIRQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
                    E+ AF++      K+   +  ++LS +    K +    +        +   
Sbjct: 52  -------AAEVEAFLTHLAVVGKVSASTQNQALSALLFLYKEVLSIDLPWLD---KVVRA 101

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K+   LP  L   +   ++             +      +  LLYG G+R+ E + L  +
Sbjct: 102 KQPQRLPVVLTRTEVQAIL-----------VRMSGTYGLMANLLYGTGMRLMECVRLRVK 150

Query: 180 NIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL----------- 227
           ++  ++  + I+ GKG K R+  L  S+   +  Y        + +I+L           
Sbjct: 151 DVDFERGEILIRDGKGAKDRVTILPESLVSPLQTYLLQRRVLFDDDIRLGKASVYLPDAL 210

Query: 228 --------------PLFRG-----------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
                          +F              R   ++  + QR +++  +  G+    T 
Sbjct: 211 ERKYPNAATDWIWQYIFPSGSFSIDPRSSVERRHHIDEKLLQRAMKKAVQTSGITKLATP 270

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           HTLRHSFATHLL +G D+R+IQ +LGH  + TT IYT+V +K G 
Sbjct: 271 HTLRHSFATHLLDSGYDIRTIQELLGHKDVHTTMIYTHVLNKGGR 315


>gi|217961112|ref|YP_002339680.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus cereus AH187]
 gi|229140330|ref|ZP_04268885.1| hypothetical protein bcere0013_34290 [Bacillus cereus BDRD-ST26]
 gi|217063254|gb|ACJ77504.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus cereus AH187]
 gi|228642891|gb|EEK99167.1| hypothetical protein bcere0013_34290 [Bacillus cereus BDRD-ST26]
          Length = 304

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 133/291 (45%), Gaps = 15/291 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL    + +L +  + +G +  T+++   + +Q   FL     ++  I  +  ++   ++
Sbjct: 2   ELEDVIEEYLYHC-LAKGFTPKTMKNKRQEMKQLKRFL----MDEKGISELEAINTLHLK 56

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            ++  +  + +  +S+      +++F  + +K +   E+    +   K    L +    +
Sbjct: 57  QYVRTKYKEGLQPQSIVSMFKLVRAFFSWCQKEEYLKENIAKKVELPKVPKKLLKGFTIQ 116

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   ++D           +I+ARN AI+ +L  CGLR  E   L  QN+   ++T+ + G
Sbjct: 117 EVSAMIDAF-----SYKNYIEARNKAIVAMLSDCGLRAMEIRGLLTQNV--KETTILVNG 169

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQL 250
           KG+K RI+ + P ++K ++ Y  L    L   I      F      PL+       I++ 
Sbjct: 170 KGNKERIMFISPPLKKILIRYERLRKQYLKDKIVKTDNYFLSYTADPLSHMGIYNVIKEA 229

Query: 251 RRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            + + +  +  + HT RH FA   + NG D+ ++  +LGH  +STTQ Y  
Sbjct: 230 GKRVEVEEVRCSPHTFRHFFAVQCILNGIDIFTLSKLLGHSDVSTTQRYLQ 280


>gi|13488149|ref|NP_085856.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14028105|dbj|BAB54697.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 299

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 73/280 (26%), Positives = 121/280 (43%), Gaps = 31/280 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRS 87
           R LS  T  SY     QF    A         ++   L   ++R +       +K+  +S
Sbjct: 21  RNLSPHTQDSYLLQVSQFARHFA---------KSPALLCQEDVRTYQVYLTNEKKLAPKS 71

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           +  ++S ++   +     +   +     +   +   +L   L+ ++ L  +  V      
Sbjct: 72  IHVAVSALRFLYRVTLGFEWDFD---RIIPCPRVPKTLAVILSPEEVLHFLGCVE----- 123

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
                  ++  IL   Y  GLRISEA+ L P+ I   +  LR+ QGKG K R V L   +
Sbjct: 124 -----SLKHQTILTTCYAAGLRISEAVHLRPEAIDRQRMVLRVDQGKGQKDRYVMLSARL 178

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            + + +Y+        +  +  +F G I  +P++    Q    +  R  GL    T H+L
Sbjct: 179 LETLTDYWR------AVRPKTWMFPGTIPNEPISTNAVQNACGKAHRLSGLGKPVTPHSL 232

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           RH+FA HLL  G D+R+IQ +LGH  LSTT  Y  + +  
Sbjct: 233 RHAFACHLLEAGTDIRTIQLLLGHRSLSTTSQYLRIATSK 272


>gi|302389546|ref|YP_003825367.1| integrase family protein [Thermosediminibacter oceani DSM 16646]
 gi|302200174|gb|ADL07744.1| integrase family protein [Thermosediminibacter oceani DSM 16646]
          Length = 310

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 64/310 (20%), Positives = 132/310 (42%), Gaps = 16/310 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             Q++L + +  + LS  TL+ YE   ++F  +          +     ++   I+ ++ 
Sbjct: 9   AIQDFLDDRKF-KNLSPETLKGYEITLKEFHNYCTDN-----NLIDTSDITPRVIKNYLI 62

Query: 77  K-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQ 133
             +  +     +L   +  +K F  YL++ +I  E  +    +  LK+   +     + Q
Sbjct: 63  HCQNERSNNPVTLNHKIRNLKIFFNYLEEIEIYDEKNNPAKPIPYLKEDVKI-EVFTDYQ 121

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++       + +  +   R+  I+  L G G+R+ E ++L  ++I      + I GK
Sbjct: 122 IRQMLTYYRRLKTRDKAFWAYRDYTIIVTLLGTGIRLGELVNLQWRHIDFVNQVMTIFGK 181

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
               R +PL   + K + E+   C       +   +F   + +P+     +   ++L+  
Sbjct: 182 KRIQRSIPLTEKLVKELAEFKVFCERYFG-KLNDYVFVNSKNEPMTADAVKCMFKRLKEI 240

Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           +    +  +AHT RH+FA   L NGGD+ S+Q ILGH ++  T  Y  +     G  + E
Sbjct: 241 MNFRDVRLSAHTFRHTFAHRFLMNGGDVFSLQKILGHSKIEMTMRYVAL----WGTALKE 296

Query: 313 IYDQTHPSIT 322
             ++ +P   
Sbjct: 297 QNEKYNPLSK 306


>gi|255012873|ref|ZP_05284999.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 231

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 62/233 (26%), Positives = 105/233 (45%), Gaps = 12/233 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +   L +E+ LS  ++ +Y  D  + L F           + ++++SY +++ FI++
Sbjct: 8   INRYNTYLRLEKSLSANSIDAYLTDLDKLLRFAEDEK------KDVKEISYDDLQQFIAQ 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R   I  RS  R +SGIKSF ++L      T      + + K    LP  L   +  ++
Sbjct: 62  LRDIGIHPRSQARIISGIKSFYRFLLLDNYITNDPTELLESPKIGLKLPEVLTVNEINSI 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D + L           RN A+L +LY CGLR+SE   L   +I   +  +R++GKG K 
Sbjct: 122 LDTIDLTLPE-----GQRNRAMLEVLYSCGLRVSELTGLRYSDIYPKEGFIRVEGKGSKQ 176

Query: 198 RIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           R+VP+     + I  Y        +    +  LF   RG  L+  +    I+Q
Sbjct: 177 RLVPISEVALREIKNYLYDRNSVVVKKGFEDILFLSRRGTALSRIMVFHIIKQ 229


>gi|325474369|gb|EGC77557.1| DNA integrase [Treponema denticola F0402]
          Length = 426

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 74/322 (22%), Positives = 135/322 (41%), Gaps = 61/322 (18%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-T 80
           L+ +   +  SK T+++Y     +F+         +   + ++ LS TEI AF+S+    
Sbjct: 115 LEEVITAKHYSKRTMEAYSYWISRFI--------RENKNKNLKTLSDTEINAFVSRLAVK 166

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +K    S  ++L+ +    K +    +T ++   N+   KK   LP  +  ++   +   
Sbjct: 167 EKAAASSQNQALAALLFLYKNIL--GLTIKTP-ENIVRAKKPKKLPAIMTREETAKIF-- 221

Query: 141 VLLHTSHETKWIDARNS-AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR 198
                      +   +   ++ LLYG G+R+ EAL L  Q+I   ++ + +  GKG K R
Sbjct: 222 ---------SLLPENDYGLLIRLLYGTGMRLMEALRLRIQDIDFGKNEITVHCGKGAKDR 272

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL-------------------------PLFRGI 233
              L  S++  + ++ +        + +                           +F   
Sbjct: 273 KTVLPVSLKFPLQKHLENVRLIHEADCKDGFGSVPLPSALAKKYPAAGKAWAWQWVFPQA 332

Query: 234 RGK-----------PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
           R              ++P V QR + +     G+P     HT RHSFATHLL    D+R+
Sbjct: 333 RRWQNKETGEQGRHHIDPSVIQRTLHEAVLKSGIPKPIGCHTFRHSFATHLLEASYDIRT 392

Query: 283 IQSILGHFRLSTTQIYTNVNSK 304
           IQ +LGH  + TT +YT+V ++
Sbjct: 393 IQELLGHSDVKTTMVYTHVLNR 414


>gi|269962907|ref|ZP_06177246.1| site-specific recombinase IntI [Vibrio harveyi 1DA3]
 gi|269832352|gb|EEZ86472.1| site-specific recombinase IntI [Vibrio harveyi 1DA3]
          Length = 320

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 85/323 (26%), Positives = 132/323 (40%), Gaps = 65/323 (20%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           R  +K T+++Y    +++++F          +    +LS  ++  F+S     +K+  ++
Sbjct: 16  RHYAKKTIETYLFWIKRYIVFHQ--------LAHPSKLSEDDVERFLSHLAIDEKVAVKT 67

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALTLVDNVLLHT 145
              +L+ I    +     +       LNMR  K      LP  L   +    V +     
Sbjct: 68  QALALNAISFLYR-----EYFQMPLSLNMRFQKSLTEKKLPVVLTRDEVRRFVQH----- 117

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLP 204
                 ID +    + LLYG GLRI E L L  Q+I  D   LR+ QGKG K R V L  
Sbjct: 118 ------IDPKYKLHIQLLYGSGLRIMECLRLRIQDIDYDYGALRVWQGKGGKNRTVTLAK 171

Query: 205 SVRK-----------------------------AILEYYDLCPFDLNLNIQLPLFR---- 231
            + +                              +   Y     D N +   P  +    
Sbjct: 172 ELHEPLKAQVSLARDYYQKDRHMGGYAGVYISDGLRRKYPGAELDFNWHFLFPSTKLSVD 231

Query: 232 ----GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                 R   +N    QR +++  +  G+  S T HTLRHSFATHLL +G D+R++Q  L
Sbjct: 232 DDTGEFRRHHINESAIQRAVKRATKDAGIEKSVTCHTLRHSFATHLLESGADIRTVQEQL 291

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH  + TTQIYT+V  +  G  +
Sbjct: 292 GHTDVKTTQIYTHVIERGAGGVL 314


>gi|82703133|ref|YP_412699.1| Phage integrase [Nitrosospira multiformis ATCC 25196]
 gi|82411198|gb|ABB75307.1| Phage integrase [Nitrosospira multiformis ATCC 25196]
          Length = 329

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 70/284 (24%), Positives = 125/284 (44%), Gaps = 28/284 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  T ++Y+ D R F+ F        ++ +  R ++ + + A+  +   +++G  +++R 
Sbjct: 44  SLQTRRAYQNDLRGFMAFAGI-----VSPEDFRLITRSHVLAWRKRLEEEQLGGATIRRK 98

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSN---SLPRALNEKQALTLVDNVLLHTSHE 148
           L+ + S  +YL +    T + +  ++     +     P AL + QA  L++       + 
Sbjct: 99  LAALSSLFEYLCEANAVTHNPVKGVKRPPVESWQGKTP-ALGDVQARALLE-----APNA 152

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGDKIRIVPLLPS 205
                 R+ AIL  L   G+R  E   L  ++    +     LRI+GKG K+R +P  P 
Sbjct: 153 KTLKGKRDRAILSALLYHGIRREELARLKVKDYNQSRRGVPHLRIKGKGGKMRFIPTHPG 212

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFR-------GIRGKPLNPGVFQ-RYIRQLRRYLGL- 256
               I EY +        +   PLFR       G     L P       + +  R LG+ 
Sbjct: 213 TLTLIEEYLEAAGH--GHDPDAPLFRPVKNNVHGHTLTALTPDSIYFEVVLKYLRKLGIF 270

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             +   H +R + AT+ L NG D+  +Q  LGH  ++TT+IY +
Sbjct: 271 GENMGPHVMRATAATNALDNGADIAKVQEWLGHANIATTRIYDH 314


>gi|325676755|ref|ZP_08156428.1| phage integrase family site-specific recombinase [Rhodococcus equi
           ATCC 33707]
 gi|325552303|gb|EGD21992.1| phage integrase family site-specific recombinase [Rhodococcus equi
           ATCC 33707]
          Length = 346

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 62/314 (19%), Positives = 121/314 (38%), Gaps = 31/314 (9%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR- 72
           L      +L +    +  S  TL++Y  D      FL+  T   ++  ++  ++   ++ 
Sbjct: 13  LEAWFAEFLLHRSTAK-PSPHTLKAYRQDFAAISGFLSEQTGVPVSALSVEAITKPSMQQ 71

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           AF S   T ++   S++R  S   +   YL        + +  +   K    +P+AL   
Sbjct: 72  AFASFAATHEVA--SIRRCWSTWNTLCDYLFSIDTIVANPMSAVLRPKAPKRIPKALPAD 129

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-------DDQ 185
               L+  +    +   +    R+ AI+      G+R SE +++   ++           
Sbjct: 130 AVTRLIQTLQEDDTDGVRPWGERDFAIILTALLTGMRSSELIAVDLGDVRSAPDPSGGSA 189

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL----------------NLNIQLPL 229
             +R++GKG K R+    P++   +  Y +                      +     PL
Sbjct: 190 RVIRVRGKGSKERVATAEPALVATLTGYLESRIARFPETTKRRVPSGATPWQHFRSTDPL 249

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLP----LSTTAHTLRHSFATHLLSNGGDLRSIQS 285
           F G  G  +  G  Q  + +  R  G+          H  RH+FAT++      + ++  
Sbjct: 250 FVGADGTRITRGTLQYRVLRAYRRAGINGERAKGALTHQFRHTFATNMADENVSIFTLMR 309

Query: 286 ILGHFRLSTTQIYT 299
           +LGH  ++TTQ+YT
Sbjct: 310 MLGHESMNTTQVYT 323


>gi|23452624|gb|AAN33109.1| VvuIntIA [Vibrio vulnificus]
          Length = 320

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 83/327 (25%), Positives = 136/327 (41%), Gaps = 62/327 (18%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQ 81
            ++   R  +  T+Q+Y    +Q++IF          +     L+ T +  F+S     Q
Sbjct: 11  DHMRT-RHYASKTIQAYISWIKQYIIFHK--------MAHPSTLNETHVEEFLSYLALEQ 61

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
           K+  ++   +L+ I    +   +  ++ E   +  +       LP  L + +  +L+ + 
Sbjct: 62  KVAAKTQALALNSIMFLYREYFRTPLSNE---IKFQKSLLDRKLPVVLTKSELRSLIQH- 117

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV 200
                     ID R    + LLYG GLR+ E + L  Q+I      LRI QGKG K R V
Sbjct: 118 ----------IDPRYKLHIMLLYGSGLRVMECVRLRVQDIDYHYGALRIWQGKGGKNRTV 167

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP--------------------------LFRG-- 232
            L   +   + +  +L       +I  P                          LF    
Sbjct: 168 TLAKELFPMLKQQEELALRYYQKDINTPGYSGVWLTHSLQRKYRGAEMDFNWHYLFPSEK 227

Query: 233 ---------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                    +R   +N    QR +++  +  G+  + T HTLRHSFATHLL +G D+R++
Sbjct: 228 LSIDPESNLLRRHHINEQSLQRAVKRAAKDAGIEKTVTCHTLRHSFATHLLESGADIRTV 287

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWM 310
           Q  LGH  + TTQIYT+V  +  G  +
Sbjct: 288 QEQLGHSDVKTTQIYTHVLERGAGGVL 314


>gi|312139793|ref|YP_004007129.1| phague integrase [Rhodococcus equi 103S]
 gi|311889132|emb|CBH48445.1| putative phague integrase [Rhodococcus equi 103S]
          Length = 341

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 62/314 (19%), Positives = 121/314 (38%), Gaps = 31/314 (9%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR- 72
           L      +L +    +  S  TL++Y  D      FL+  T   ++  ++  ++   ++ 
Sbjct: 8   LEAWFAEFLLHRSTAK-PSPHTLKAYRQDFAAISGFLSEQTGVPVSALSVEAITKPSMQQ 66

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           AF S   T ++   S++R  S   +   YL        + +  +   K    +P+AL   
Sbjct: 67  AFASFAATHEVA--SIRRCWSTWNTLCDYLFSIDTIVANPMSAVLRPKAPKRIPKALPAD 124

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-------DDQ 185
               L+  +    +   +    R+ AI+      G+R SE +++   ++           
Sbjct: 125 AVTRLIQTLQEDDTDGVRPWGERDFAIILTALLTGMRSSELIAVDLGDVRSAPDPSGGSA 184

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL----------------NLNIQLPL 229
             +R++GKG K R+    P++   +  Y +                      +     PL
Sbjct: 185 RVIRVRGKGSKDRVATAEPALVATLTGYLESRIARFPETTKRRVPSGATPWQHFRSTDPL 244

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLP----LSTTAHTLRHSFATHLLSNGGDLRSIQS 285
           F G  G  +  G  Q  + +  R  G+          H  RH+FAT++      + ++  
Sbjct: 245 FVGADGTRITRGTLQYRVLRAYRRAGINGERAKGALTHQFRHTFATNMADENVSIFTLMR 304

Query: 286 ILGHFRLSTTQIYT 299
           +LGH  ++TTQ+YT
Sbjct: 305 MLGHESMNTTQVYT 318


>gi|227539350|ref|ZP_03969399.1| possible tyrosine recombinase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227240806|gb|EEI90821.1| possible tyrosine recombinase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 301

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 78/289 (26%), Positives = 142/289 (49%), Gaps = 32/289 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + + L ++R  +  T++SY+     FL  ++ Y        ++ ++  ++I AFI++
Sbjct: 29  LETFEKRLLMQR-YAGNTIRSYKDYASIFLKHVSKYP-------SLEEIPLSDIEAFINE 80

Query: 78  R-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS-NSLPRALNEKQAL 135
           + +  KI     K  +  IK   + +  +KI      L+    K+S + LP+  ++++  
Sbjct: 81  KVQNGKISVSYQKGLVGAIKKMYELILDKKIQ-----LDYLYPKRSFSKLPKFFSKEEVR 135

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKG 194
            ++DN            + ++ AIL  +Y CGLR+SE L+L  ++I      +RI Q KG
Sbjct: 136 NILDNT----------QNLKHKAILMTIYSCGLRLSELLNLKIKDIKSSDGIIRIHQSKG 185

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +K RIV L   +   +  YY           +  LF G RG   +    Q  +++     
Sbjct: 186 NKDRIVSLPDKLLATLRHYYQ------AFKPKEYLFEGERGGKYSERSVQLILKKALIKA 239

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            +    + HTLRHS+ATHL+ +G D+R ++ +LGH  + TT IYT++  
Sbjct: 240 NVQSEGSVHTLRHSYATHLIQSGIDIRIVKELLGHENIKTTMIYTHITD 288


>gi|320321214|gb|EFW77351.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. glycinea str. B076]
          Length = 320

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 66/277 (23%), Positives = 122/277 (44%), Gaps = 23/277 (8%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T ++Y+ D   F  F+        +    RQ++ + + A+ +    + +   +++R L
Sbjct: 39  PRTRRAYQNDLTDFSSFIGL-----ASADDFRQVTRSHVLAWRADLEQRGLAGATIRRKL 93

Query: 93  SGIKSFLKYLKKRKITTE-SNILNMRNLKKSNSLPRALNEKQALTLVDNV---LLHTSHE 148
           + + S   +L         + +  ++  +  +      NE +   L D+    LL    E
Sbjct: 94  AALASLFDHLLDNNAVAGGNPVHGVKRPRIES------NEGKTPALGDHQAKALLEAPDE 147

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSV 206
           +     R+ A+L +L   GLR  EA  L   +I + +    L+I GKG K+R +PL P  
Sbjct: 148 STLKGRRDRAMLAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKGGKVRYLPLHPVA 207

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLP-LSTT 261
              I  Y +     L+ + ++PLF  +RGK     ++       +    +  G+      
Sbjct: 208 AGRIHLYLERSGHHLD-DKKVPLFISLRGKSTGAGVSANGIYTVVEAYAKKAGIEVDGLG 266

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            H LR + AT+ L +  D+  +Q+ LGH  +STT+IY
Sbjct: 267 VHGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303


>gi|291526089|emb|CBK91676.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
 gi|291527174|emb|CBK92760.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 336

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 122/296 (41%), Gaps = 25/296 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS- 76
            + +L    IE G S+ T++ Y    +  L           T  ++R+++  EIR ++S 
Sbjct: 62  LEMFLDAKTIE-GCSERTIKYYRETVQHLLS---------QTETSVRKITTEEIREYLSD 111

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            ++     + ++      I SF  +L++     +S +  +  +K    +   ++++    
Sbjct: 112 YQKLNNCSNVTIDNVRRNISSFFSWLEEEDYILKSPMRRIHKIKTKTVVKSVISDEGIEK 171

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L DN            + R+ AI+ LLY  G+R+ E ++L   +I  +     + GKGDK
Sbjct: 172 LRDNC----------NEKRDLAIIDLLYSTGIRVGELVNLNIDDIDLEGRECIVYGKGDK 221

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R V      +  + +Y +      + N  L +        L     +  +R+L R L L
Sbjct: 222 ERRVYFDAKAKVHLKDYINTRT---DKNKALFVTLDAPHDRLKISGVEIRLRKLGRKLSL 278

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                 H  R S AT  +  G  +  +Q ILGH ++ TT  Y  VN  N      +
Sbjct: 279 ER-IHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVNQNNVKTAHQK 333


>gi|92116456|ref|YP_576185.1| phage integrase [Nitrobacter hamburgensis X14]
 gi|91799350|gb|ABE61725.1| phage integrase [Nitrobacter hamburgensis X14]
          Length = 289

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 126/295 (42%), Gaps = 32/295 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ  ++++ I R  +  T   Y    + F ++L          ++    S  ++R +   
Sbjct: 10  RQRMIEDMTI-RKFAPKTQHDYLQRVKNFAVYLR---------RSPDTASAEDVRRYQLH 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +G  +  +++S ++ F K    R       +     +++ + LP  L+ ++   L
Sbjct: 60  LTASGVGVPTANQTVSTLRFFFKVTLGR----ADLVERTAFVREPSKLPVVLSPEEVACL 115

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
           +D V             +  A L + YG GLR+SE ++L   NI   +  +R+ QGKG +
Sbjct: 116 LDAV----------PALKYKAALSVAYGAGLRVSEVVALKVGNIDSKRMIIRVEQGKGRE 165

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLG 255
            R V L P + + +  +Y           Q  LF G  R + +      R          
Sbjct: 166 YRYVMLSPHLLELLRAWY------KAARPQGWLFPGRDRVRQMTTRQLNRACHAAADMAE 219

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           +    + HTLRHSFATHLL    D+R IQ +LGH +L TT +Y  V +K     M
Sbjct: 220 IGKPVSMHTLRHSFATHLLEQNIDIRVIQVLLGHAKLDTTALYARVATKAIQQVM 274


>gi|126664740|ref|ZP_01735724.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126664867|ref|ZP_01735851.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126666649|ref|ZP_01737627.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126666883|ref|ZP_01737859.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126628599|gb|EAZ99220.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126629037|gb|EAZ99656.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126631066|gb|EBA01680.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126631193|gb|EBA01807.1| phage-related integrase [Marinobacter sp. ELB17]
          Length = 336

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 68/329 (20%), Positives = 126/329 (38%), Gaps = 25/329 (7%)

Query: 10  VSFELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
              E     Q +  + L  ++ +S  T+ +Y    +  L ++   T +   +  +  +  
Sbjct: 7   APTEFGALLQRFFAERLIQQQNVSPRTVAAYRDTFKLLLNYVGRATGKPPAMLALCDVDA 66

Query: 69  TEIRAFISKRRTQKIGD-RSLKRSLSGIKSFLKYLKKRK---ITTESNILNMRNLKKSNS 124
             +  F++   T++    R+    L+ +++F  Y+  +    +     IL +   +    
Sbjct: 67  ALVLNFLTHLETERHNTIRTRNARLAAVRAFAHYVASQAPPALHLAQQILAIPMKRFERP 126

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           +   L+  +   L+          T W   R++A+L +LY  G R+SE + +   +I   
Sbjct: 127 MLEFLSRDEVRALL-----AAPGITTWCGRRDTAMLTVLYNTGARVSELIGIRVADITLA 181

Query: 185 Q-STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
             +++R+ GKG K R VPL     K I ++        +L+++ PL     G P+     
Sbjct: 182 ATASVRLHGKGRKQRTVPLWKETAKEIRQWLKYA----DLHVEQPLIPNRSGLPMTRTNV 237

Query: 244 QRYIRQLRRYLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
              +                   + HT RH+ A HLL  G DL  I   LGH    TT  
Sbjct: 238 AERLNLAVSTATKMCPQLAGRRISPHTWRHTTAMHLLQAGVDLTVIALWLGHESPVTTHG 297

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
           Y   +       +  I     P  TQ  +
Sbjct: 298 YVEADMGMKERALAAIT----PPATQHKR 322


>gi|190404345|ref|YP_001960976.1| rcorf1 [Agrobacterium rhizogenes]
 gi|158322141|gb|ABW33558.1| rcorf1 [Agrobacterium rhizogenes]
          Length = 338

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 71/319 (22%), Positives = 124/319 (38%), Gaps = 23/319 (7%)

Query: 13  ELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           +L    + W    L   RG+S  T+ SY    R    F         +  T+R L    I
Sbjct: 11  DLAVLIERWFTDRLMKHRGVSSNTIASYRDTFRLLFAFAQARLGRSPSQLTLRDLDAPFI 70

Query: 72  RAFISKRRTQKIGD-RSLKRSLSGIKSFLKYLKKRKITTESNI---LNMRNLKKSNSLPR 127
            AF+    TQ+    R+    L+ I+SF +Y    +    ++I   L + + +      +
Sbjct: 71  GAFLEVLETQRAASVRTRNLRLTAIRSFFRYAAFEEPAHSAHIQRVLAIPSKRCDKRQLQ 130

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS- 186
            L   +  +++D      +  + W+  R+  +L L    GLR+SE + L   ++M  +  
Sbjct: 131 FLTRPEIESILDC-----TDRSTWLGRRDYTLLLLAAQTGLRVSEVIDLDRDSVMLGRGA 185

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            ++  GKG K R  PL    ++A+  +      +        LF  + G  L+    Q  
Sbjct: 186 HVQCVGKGRKERSTPLTKVAQEALRRWLK----EPGKRGATALFPNMHGGRLSADGVQAL 241

Query: 247 IRQLRRYLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +                   + H LRHS A  LL  G D   I   LGH  + TT  Y +
Sbjct: 242 VFAAVYRAREHCVSLRSKRVSPHVLRHSAAMELLQAGVDCSVIALWLGHEAMETTLTYLH 301

Query: 301 VNSKNGGDWMMEI--YDQT 317
            + +     + ++  Y++ 
Sbjct: 302 AHLELKESTLAKLKPYERA 320


>gi|66047873|ref|YP_237714.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
 gi|63258580|gb|AAY39676.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 317

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 67/277 (24%), Positives = 125/277 (45%), Gaps = 23/277 (8%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T ++Y+ D   F  F+        +    RQ++ + + A+ +    + +   +++R L
Sbjct: 36  PRTRRAYQNDLTDFSSFIVL-----ASADDFRQVTRSHVLAWRADLEQRGLAGATIRRKL 90

Query: 93  SGIKSFLKYLKKRK-ITTESNILNMRNLKKSN---SLPRALNEKQALTLVDNVLLHTSHE 148
           + + S   +L +   +   + +  ++  +  +     P AL + QA  L+D        E
Sbjct: 91  AALASLFDHLLENNAVVGGNPVHGVKRPRIESNEGKTP-ALGDHQAKALLD-----APDE 144

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSV 206
           +     R+ A+L +L   GLR  EA  L   +I + +    L+I GKG K+R +PL P  
Sbjct: 145 STLKGLRDRAMLAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKGGKVRYLPLHPVA 204

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLP-LSTT 261
              I  Y +     L ++ ++PLF  +RGK     ++       +    +  G+      
Sbjct: 205 AGRIHMYLERSGHHL-VDKKVPLFISLRGKSTGAGVSANGIYTVVGAYAKKAGIKVDGLG 263

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            H LR + AT+ L +  D+  +Q+ LGH  +STT+IY
Sbjct: 264 VHGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 300


>gi|331004356|ref|ZP_08327830.1| hypothetical protein HMPREF0491_02692 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411160|gb|EGG90577.1| hypothetical protein HMPREF0491_02692 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 352

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 65/322 (20%), Positives = 132/322 (40%), Gaps = 26/322 (8%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE---------KITIQT 62
            EL    +++ +   IE      T  +Y  D + FL FL     +          I + +
Sbjct: 23  HELPPFFKDFFR--GIEPRTQSRTQIAYAYDIKIFLQFLLNENPDIKRSCSKISDIPLSS 80

Query: 63  IRQLSYTEIRAFISKRRTQ-------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           +  LS T+I  ++   + +          + ++KR +S +KS  KY  + +  +E+ +  
Sbjct: 81  LESLSVTDIEEYMEYLKYRDTDGKKISNKENAVKRKISTLKSVFKYFYRVEKLSENIMER 140

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS------AILYLLYGCGLR 169
           ++  K  +     L+  +   ++D          +     N       A+L LL G G+R
Sbjct: 141 VQLPKLHSKEIIRLDIDEVAMMIDEAENGEGLSERQKAYHNKTKIRDVALLSLLLGTGIR 200

Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLP 228
           +SE + L   ++    + + I  KG K   +     V++A+  Y+D     L     +  
Sbjct: 201 VSECVGLNISDVDFKHNGILIHRKGGKEVTIYFSDEVKEALQNYFDERVLILEESGHEGA 260

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LF  ++ K L+    ++ +++  + +      T H LR ++ T+L    GD+  +  +LG
Sbjct: 261 LFLSMQNKRLSVRSVEKLVKKYAKIISPLKKITPHKLRSTYGTNLYKETGDIYLVADVLG 320

Query: 289 HFRLSTT-QIYTNVNSKNGGDW 309
           H  ++TT + Y  +        
Sbjct: 321 HSDVNTTKKHYAAIEDDRRRSA 342


>gi|320161568|ref|YP_004174792.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
 gi|319995421|dbj|BAJ64192.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
          Length = 292

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 60/307 (19%), Positives = 130/307 (42%), Gaps = 28/307 (9%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+  + WL+    E+  S +T++ Y  D  QF  +        + ++    ++  ++R +
Sbjct: 4   LQAFEAWLR----EQDRSDVTVRGYLADMSQFERWFEQTNGRGLRVED---VTPADVREY 56

Query: 75  ISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            +  +T QK    +++R L  ++++ ++         +    ++  ++    P  L   +
Sbjct: 57  RAWLQTVQKASAATIRRRLMALRAYCRWGMAAGKIERNPTARLKMPREEKLSPGWLERSE 116

Query: 134 ALTLVDNVL----LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              LV           +   + +  R+ A++  L   GLR+SEA ++   ++   + +  
Sbjct: 117 QWRLVREAERGIQAADTPARRRLAVRDWALVVFLLHTGLRVSEACAVEVSDVQMGERSGW 176

Query: 190 IQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           +Q   GKG K R VPL    R+A+  + +                  R   +     QR 
Sbjct: 177 VQVRSGKGAKARKVPLNAEARRALKAWLEERGGQPG-----------RMFEMTVSGVQRR 225

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           + ++ R  G+      HTLRH+ A +L+  G  L+ + ++LGH  L+ T++Y     ++ 
Sbjct: 226 LAEMGRRAGVE--VHPHTLRHTLAKNLVDAGVGLQEVAALLGHSSLNATRVYVTPGERDL 283

Query: 307 GDWMMEI 313
              +  +
Sbjct: 284 ERALSRL 290


>gi|20804053|emb|CAD31630.1| HYPOTHETICAL INTEGRASE/RECOMBINASE PROTEIN [Mesorhizobium loti R7A]
          Length = 333

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 72/322 (22%), Positives = 121/322 (37%), Gaps = 23/322 (7%)

Query: 10  VSFELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
            S +L    + W    L   RG+S  T+ SY    R    F         +  T+R L  
Sbjct: 3   ASNDLAVLIERWFTDRLMRHRGVSSNTIASYRDTFRLLFAFAQTRLGRSPSQLTLRDLDA 62

Query: 69  TEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI---LNMRNLKKSNS 124
             I AF+    T +    R+    L+ I+SF +Y    +    + I   L + + +    
Sbjct: 63  PFIGAFLEDLETLRSASVRTRNLRLTAIRSFFRYASFEEPAHSAQIHRVLAIPSKRCDKR 122

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
             + L   +   +     L     + W+  R+  +L L    GLR+SE + L   ++M  
Sbjct: 123 QLQFLTRPEIEAI-----LACPDRSTWLGRRDHTLLLLAAQTGLRVSEIIDLDRHSVMLG 177

Query: 185 QS-TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
               +R  GKG K R  PL    ++A+  + +    +        LF  + G  L+    
Sbjct: 178 HGAHVRCVGKGRKERSTPLTKVAQQALRGWLN----EPRKRGATALFPNMHGSKLSADGV 233

Query: 244 QRYIRQLRRYLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           Q  + +                 + H LRHS A  LL  G D   I   LGH  + TT  
Sbjct: 234 QALLNKYVAKAREHCVTLRSKRVSPHVLRHSAAMELLQAGVDCSVIALWLGHEAMETTLT 293

Query: 298 YTNVNSKNGGDWMMEI--YDQT 317
           Y + + +     + ++  Y++ 
Sbjct: 294 YLHAHLELKESALAKLKPYERA 315


>gi|76803916|gb|ABA55859.1| IntI [Vibrio sp. DAT722]
          Length = 320

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 84/323 (26%), Positives = 131/323 (40%), Gaps = 65/323 (20%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           R  +K T+++Y    +++++F          +    +L   ++  F+S     +K+  ++
Sbjct: 16  RHYAKKTIETYLFWIKRYIVFHQ--------LAHPSKLCEDDVERFLSHLAIDEKVAVKT 67

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALTLVDNVLLHT 145
              +L+ I    +     +       LNMR  K      LP  L   +    V +     
Sbjct: 68  QALALNAISFLYR-----EYFQMPLSLNMRFQKSLTEKKLPVVLTRDEVRRFVQH----- 117

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLP 204
                 ID +    + LLYG GLRI E L L  Q+I  D   LR+ QGKG K R V L  
Sbjct: 118 ------IDPKYKLHIQLLYGSGLRIMECLRLRIQDIDYDYGALRVWQGKGGKNRTVTLAK 171

Query: 205 SVRK-----------------------------AILEYYDLCPFDLNLNIQLPLFR---- 231
            +                                + + Y     D N +   P  +    
Sbjct: 172 ELHDPLKSQVNITRDYYQKDRHMGGYAGVYISDGLRKKYPGAELDFNWHFLFPSTKLSID 231

Query: 232 ----GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                 R   +N    QR +++  +  G+  S T HTLRHSFATHLL +G D+R++Q  L
Sbjct: 232 ADTGEFRRHHVNESAIQRAVKRAAKDAGIEKSVTCHTLRHSFATHLLESGADIRTVQEQL 291

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH  + TTQIYT+V  +  G  +
Sbjct: 292 GHTDVKTTQIYTHVIERGAGGVL 314


>gi|238924762|ref|YP_002938278.1| site-specific recombinase, phage integrase family [Eubacterium
           rectale ATCC 33656]
 gi|238876437|gb|ACR76144.1| site-specific recombinase, phage integrase family [Eubacterium
           rectale ATCC 33656]
          Length = 336

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 122/296 (41%), Gaps = 25/296 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS- 76
            + +L    IE G S+ T++ Y    +  L           T  ++R+++  EIR ++S 
Sbjct: 62  LEMFLDAKTIE-GCSERTIKYYRETVQHLLS---------QTETSVRKITTEEIREYLSD 111

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            ++     + ++      I SF  +L++     +S +  +  +K    +   ++++    
Sbjct: 112 YQKLNNCSNVTIDNVRRNISSFFSWLEEEDYILKSPMRRIHKIKTKTVVKSVISDEGIEK 171

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L DN            + R+ AI+ LLY  G+R+ E ++L   +I  +     + GKGDK
Sbjct: 172 LRDNC----------NEKRDLAIIDLLYSTGIRVGELVNLNIDDIDLEGRECIVYGKGDK 221

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R V      +  + +Y D      + N  L +        L     +  +R+L R L L
Sbjct: 222 ERRVYFDAKAKVHLKDYIDTRT---DKNKALFVTLDAPHDRLKISGVEIRLRKLGRKLSL 278

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                 H  R S AT  +  G  +  +Q ILGH ++ TT  Y  VN  N      +
Sbjct: 279 ER-VHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVNQNNVKTAHQK 333


>gi|42527350|ref|NP_972448.1| DNA integrase [Treponema denticola ATCC 35405]
 gi|41817935|gb|AAS12359.1| DNA integrase [Treponema denticola ATCC 35405]
          Length = 335

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 78/322 (24%), Positives = 134/322 (41%), Gaps = 61/322 (18%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-T 80
           L+ +   +  SK T+++Y     +F+         +   + ++ LS TEI AF+S+    
Sbjct: 24  LEEVITAKHYSKRTMEAYSYWISRFI--------RENKNKNLKTLSDTEINAFVSRLAVK 75

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +K    S  ++L+ +    K +    +T ++   N+   KK   LP  +  ++   +   
Sbjct: 76  EKAAASSQNQALAALLFLYKNIL--GLTIKTP-ENIVRAKKPKKLPAIMTREETAKIF-- 130

Query: 141 VLLHTSHETKWIDARNS-AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR 198
                      +   +   ++ LLYG G+R+ EAL L  Q+I   ++ + +  GKG K R
Sbjct: 131 ---------SLLPENDYGLLIRLLYGTGMRLMEALRLRIQDIDFGKNEITVHCGKGAKDR 181

Query: 199 IVPLLPSVR----------------------------KAILEYYDLCPFDLNLNIQLPLF 230
              L  S++                             A+ + Y             P  
Sbjct: 182 KTVLPVSLKFPLQKHMEKVRLIHEADCKEGFGSVPLPFALAKKYPNASKAWAWQWVFPQA 241

Query: 231 RGIRG--------KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
           R  R           ++P V QR + +     G+P     HT RHSFATHLL  G D+R+
Sbjct: 242 RRWRNKETGEQGRHHIDPSVIQRTLHEAVLRSGIPKPIGCHTFRHSFATHLLEAGYDIRT 301

Query: 283 IQSILGHFRLSTTQIYTNVNSK 304
           IQ +LGH  + TT +YT+V ++
Sbjct: 302 IQELLGHSDVKTTMVYTHVLNR 323


>gi|118581028|ref|YP_902278.1| integron integrase [Pelobacter propionicus DSM 2379]
 gi|118503738|gb|ABL00221.1| integron integrase [Pelobacter propionicus DSM 2379]
          Length = 468

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 79/319 (24%), Positives = 130/319 (40%), Gaps = 62/319 (19%)

Query: 22  LQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           L  +  E   R  S+ TL++Y   +RQF  FL          ++ ++L+  +++ +++  
Sbjct: 156 LATMAAEIKVRHYSRKTLKTYANWSRQFQRFLKD--------KSPQELATADVKEYMTYL 207

Query: 79  RTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             Q K+   +  ++ + +    ++  KR+      + ++   KKS  +P  L+  +   +
Sbjct: 208 AVQCKVAASTQNQAFNALLFLYRHGLKREFGE---LRDVPRAKKSLYIPVVLSRPEIDAI 264

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +             +    + ++ LL+GCGLR  E L L  ++   D   L I GKG K 
Sbjct: 265 LAQ-----------LSYPFNLVVKLLFGCGLRQFECLQLRVRDFNFDAGILTIHGKGKKD 313

Query: 198 RIVPLLPSVR------------------------------------KAILEYYDLCPFDL 221
           R VPL  S+                                     KA  E+     F  
Sbjct: 314 RTVPLPESLVPELRAQIKVVGELHDRDLSAGYDGVFLDDAVEKKYPKAPKEFVHQWFFPQ 373

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
                +      R   L+    Q  +    R   +P   T+HT RHSFATHLL  G D+R
Sbjct: 374 KNLTLVAETGQRRRWHLHESELQEALYPAVRRAKIPKRVTSHTFRHSFATHLLQAGYDIR 433

Query: 282 SIQSILGHFRLSTTQIYTN 300
            IQ++LGH  L TT IYT+
Sbjct: 434 VIQTLLGHSSLKTTMIYTH 452


>gi|225353239|gb|ACN88324.1| integrase [Riemerella anatipestifer]
          Length = 284

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 69/304 (22%), Positives = 122/304 (40%), Gaps = 60/304 (19%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSL 88
             S  T Q+Y    R F+ F          ++    L  +E+ AF+S     +K+   + 
Sbjct: 3   HYSLRTEQAYVHWVRAFIRFH--------GVRHPATLGSSEVEAFLSWLANERKVSVSTH 54

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           +++L+ +  F   +    +     +  +   + S  LP  L   + + ++          
Sbjct: 55  RQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRRLPVVLTPDEVVRIL---------- 101

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVR 207
             +++  +     LLYG G+RISE L L  +++  D  T+ ++ GKG K R + L  S+ 
Sbjct: 102 -GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLA 160

Query: 208 KAILE------------------------------------YYDLCPFDLNLNIQLPLFR 231
            ++ E                                    +     F  + +   P   
Sbjct: 161 PSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSG 220

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
            +R   +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  
Sbjct: 221 VVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSD 280

Query: 292 LSTT 295
           +STT
Sbjct: 281 VSTT 284


>gi|315651157|ref|ZP_07904189.1| phage integrase family site-specific recombinase [Eubacterium
           saburreum DSM 3986]
 gi|315486622|gb|EFU76972.1| phage integrase family site-specific recombinase [Eubacterium
           saburreum DSM 3986]
          Length = 351

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 65/325 (20%), Positives = 126/325 (38%), Gaps = 26/325 (8%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE---------KITIQTI 63
           EL    +++ +   IE      T  +Y  D + FL FL                I +  +
Sbjct: 24  ELPAFFKDFFR--GIEPRTQSRTQIAYAYDIKVFLEFLLNENPSIKNTYSKITDIPLSVL 81

Query: 64  RQLSYTEIRAFISKRRTQ-------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
             LS T+I  F+   + +          + ++KR +S +KS  KY  + +   E+ +  +
Sbjct: 82  ENLSVTDIEEFMEYLKYRESEGKKISNKENAIKRKVSTLKSVFKYFYRVEKINENIMERV 141

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR------NSAILYLLYGCGLRI 170
           +  K  +     L+  +   ++D          +           + A+L LL G G+R+
Sbjct: 142 QLPKLHSKEIIRLDIDEVAMMIDEAEKGEGLSDRQKAYHEKTKVRDVALLSLLLGTGIRV 201

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPL 229
           SE + L   ++    + + I  KG K   V     V +A+  Y D     L     +   
Sbjct: 202 SECVGLDISDVDFKNNGILIHRKGGKEVTVYFSDEVSEALQNYLDERVLILEESGHEGAF 261

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F  ++ K ++    +  +++  R +      T H LR ++ T+L    GD+  +  +LGH
Sbjct: 262 FLSMQNKRMSVRSVENLVKKYARIISPLKKITPHKLRSTYGTNLYKETGDIYLVADVLGH 321

Query: 290 FRLSTT-QIYTNVNSKNGGDWMMEI 313
             ++TT + Y  +           +
Sbjct: 322 SDVNTTKKHYAAIEDDRRKSARNAV 346


>gi|153810889|ref|ZP_01963557.1| hypothetical protein RUMOBE_01273 [Ruminococcus obeum ATCC 29174]
 gi|149833285|gb|EDM88367.1| hypothetical protein RUMOBE_01273 [Ruminococcus obeum ATCC 29174]
          Length = 280

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 57/273 (20%), Positives = 114/273 (41%), Gaps = 16/273 (5%)

Query: 57  KITIQTIRQLSYTEIRAFISKRR-------TQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
             T+  + Q+   ++  +    +       T+  G+R LKR +S ++SF  Y  KR++  
Sbjct: 3   DFTVDVLDQIKAVDLEEYQEYLKLYQSGDKTETNGERGLKRKISALRSFYAYYYKREMIH 62

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET-------KWIDARNSAILYL 162
            +  + +   K        L+  +   L+D +       T       +    R+ AI+ L
Sbjct: 63  TNPTVLIDVPKIHEKSIIRLDTDEVAMLLDYIEHCGDTLTGQKRVFYEKTKERDLAIVTL 122

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           L G G+R+SE + L  +++    + +++  KG    +V   P V KA+  Y ++      
Sbjct: 123 LLGTGIRVSECVGLDIEDVDFKNNGIKVTRKGGNEMVVYFGPEVEKALKRYLEVREGITP 182

Query: 223 L-NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
           L   +  LF   + K +     +  +++  R +      T H LR ++ T L    GD+ 
Sbjct: 183 LAGHEHALFYSAQRKRMGVQAVENMVKKYSRQITTTKKITPHKLRSTYGTALYQETGDIY 242

Query: 282 SIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
            +  +LGH  ++TT + Y  ++          +
Sbjct: 243 LVADVLGHKDVNTTKKHYAALDDARRRQAATAV 275


>gi|194716540|gb|ACF93205.1| putative transposase [Sphingobacterium sp. PM2-P1-29]
          Length = 279

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 142/289 (49%), Gaps = 32/289 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + + L ++R  +  T++SY+     FL  ++ Y        ++ ++  ++I AFI++
Sbjct: 7   LETFEKRLLMQR-YAGNTIRSYKDYASIFLKHVSKYP-------SLEEIPLSDIEAFINE 58

Query: 78  R-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS-NSLPRALNEKQAL 135
           + +  KI     K  +  IK   + +  +KI      L+    K+S + LP+  ++++  
Sbjct: 59  KVQNGKISVSYQKGLVGAIKKMYELILDKKIQ-----LDYLYPKRSFSKLPKFFSKEEVR 113

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKG 194
            ++DN            + ++ AIL  +Y CGLR+SE L+L  ++I      +RI Q KG
Sbjct: 114 NILDNT----------QNLKHKAILMTIYSCGLRLSELLNLKIKDIKSSDGIIRIHQSKG 163

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +K RIV L   +   +  YY           +  LF G +G   +    Q  +++     
Sbjct: 164 NKDRIVSLPDKLLATLRHYYQ------AFKPKEYLFEGEKGGKYSERSVQLILKKALIKA 217

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            +    + HTLRHS+ATHL+ +G D+R ++ +LGH  + TT IYT++  
Sbjct: 218 NVQSEGSVHTLRHSYATHLIQSGIDIRIVKELLGHENIKTTMIYTHITD 266


>gi|120537151|ref|YP_957208.1| phage integrase family protein [Marinobacter aquaeolei VT8]
 gi|120326986|gb|ABM21293.1| phage integrase family protein [Marinobacter aquaeolei VT8]
          Length = 327

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 73/317 (23%), Positives = 128/317 (40%), Gaps = 23/317 (7%)

Query: 14  LLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           LL   +++    L+  +G S  T+++Y    R   I+LA      +    I  L    I 
Sbjct: 9   LLAYVESFFRDYLQRLKGASTHTVRAYRDTLRLLFIYLADTKGCAVADLQISDLRVDAIA 68

Query: 73  AFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESN---ILNMRNLKKSNSLPRA 128
           AF+++  + +     +     + I+SF K+L +  +        IL +   K    L   
Sbjct: 69  AFLTQLESVRANAVVTRNYRRAAIRSFCKHLIRVDLPHAEQYQRILALPAKKSRQPLATY 128

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-ST 187
           L  ++   ++D            +  R+  +L  LY  G RISEAL++   ++       
Sbjct: 129 LEAEEVHAIIDQ-----PDRHTALGQRDHGLLLFLYNTGARISEALAVRCADLHLTPPRQ 183

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           +R+ GKG K R+ PL     +A+     +     N      +F   +G+PL        +
Sbjct: 184 VRLHGKGRKDRLCPLWRETTQALQCLPAVR----NDTPGSFVFVNRQGEPLTRDGVAYLL 239

Query: 248 RQLRRYLGLP-------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           R+      +P          T H LRHS A  LL +G D+  I+  LGH  ++TT  Y  
Sbjct: 240 RKYVADA-IPTTPTLKRRKITPHVLRHSCAVALLQSGVDITVIRDYLGHASVATTSRYLT 298

Query: 301 VNSKNGGDWMMEIYDQT 317
            N +     +   +++ 
Sbjct: 299 TNLQMKRAALEAFWERA 315


>gi|224023591|ref|ZP_03641957.1| hypothetical protein BACCOPRO_00295 [Bacteroides coprophilus DSM
           18228]
 gi|224016813|gb|EEF74825.1| hypothetical protein BACCOPRO_00295 [Bacteroides coprophilus DSM
           18228]
          Length = 207

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 50/215 (23%), Positives = 102/215 (47%), Gaps = 8/215 (3%)

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
           +     +L +   KK   LP  + E +   L+D           ++  R+  IL + Y  
Sbjct: 1   MIPVDPMLKVIGPKKKKPLPVFVKEAEMDRLLD----DADFGDGFLGVRDRMILEVFYET 56

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G+R SE + L   ++      +++ GK +K R++P    + + +  Y  +   +++    
Sbjct: 57  GVRRSELIGLNDADVDFSSCVIKVTGKRNKQRLIPFGEELERDLRVYLSVRDENISEREN 116

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
              F    G+ L+PG+    +++    +      + H LRH+FAT +L++  +L +++ +
Sbjct: 117 DAFFVRKDGRRLSPGMVYLLVKRNLTKVVTLKKKSPHVLRHTFATSMLNHQAELEAVKEL 176

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           LGH  LSTT++YT+   +     + ++Y+Q HP  
Sbjct: 177 LGHESLSTTEVYTHTTFEE----LKKVYEQAHPRA 207


>gi|167768052|ref|ZP_02440105.1| hypothetical protein CLOSS21_02596 [Clostridium sp. SS2/1]
 gi|167710381|gb|EDS20960.1| hypothetical protein CLOSS21_02596 [Clostridium sp. SS2/1]
 gi|291561050|emb|CBL39850.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2]
          Length = 322

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 124/296 (41%), Gaps = 25/296 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS- 76
            + +L    +E G S+ T+Q Y+      L           T + IR+++  E+R++++ 
Sbjct: 48  LEMFLDAKRVE-GCSERTIQYYKVTAEHMLS---------QTEKEIRKITTDEMRSYLAD 97

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            ++     + ++      I SF  +L++     +S +  +  +K    +   + ++    
Sbjct: 98  YQKRNNCSNVTIDNIRRNISSFFTWLEEEDYILKSPMRRIHKIKTKTVVKSVITDEGIEQ 157

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L D+              R+ A++ LLY  G+R+ E ++L   +I  ++    + GKGDK
Sbjct: 158 LRDHC----------TQIRDLAMIDLLYSTGIRVGELVNLNIGDINFEERECVVYGKGDK 207

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R V      +  ++EY +      + N  L +        L     +  +RQL R LGL
Sbjct: 208 ERRVYFDAKAKVHLMEYIESR---KDKNPALFVTLDAPYDRLKISGVEIRLRQLGRELGL 264

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                 H  R + AT  +  G  +  +Q ILGH ++ TT  Y  VN  N      +
Sbjct: 265 ER-IHPHKFRRTMATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVNQNNVKASHQK 319


>gi|167758606|ref|ZP_02430733.1| hypothetical protein CLOSCI_00946 [Clostridium scindens ATCC 35704]
 gi|167663802|gb|EDS07932.1| hypothetical protein CLOSCI_00946 [Clostridium scindens ATCC 35704]
          Length = 346

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 70/317 (22%), Positives = 130/317 (41%), Gaps = 22/317 (6%)

Query: 13  ELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           +L    +++L   L  +R  S  T+++Y     QFL + A      +   T   ++Y  +
Sbjct: 8   QLFTLLRDFLLVYLPNQRKASGNTVKAYRTALNQFLKYTAGRKNISVLSVTFGMVTYKTV 67

Query: 72  RAFISKRRTQKIG-DRSLKRSLSGIKSFLKY---LKKRKITTESNILNMRNLKKSNSLPR 127
            A++     +K     +    L+ +++F+ Y    +   I+  S +  +  ++K+    +
Sbjct: 68  NAYLDWLSVEKNATPATRNNRLAALRAFVSYAAACRPEYISVASELTTI-GIQKNERFAK 126

Query: 128 A--LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
              ++E+    L+             I  R+  ++  LY  G RI E L +   +I  D+
Sbjct: 127 VDYMSEEAVKALL-----AEPDTKTEIGVRDQFLMIFLYDTGARIQEVLDVKICDIKVDR 181

Query: 186 S-TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNPG 241
           + T+ + GKG K R VPL+    K +  Y  +            LF   R      +   
Sbjct: 182 TPTVTLHGKGKKTRSVPLMKDTVKHLQNYMKVFHPGETWLSSEWLFYVERKGNRNAMCDD 241

Query: 242 VFQRYIRQLRRYL-----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
             +  I++           +PL+   H  RH+ A HL  +G DL  I   LGH +L TT 
Sbjct: 242 TVRLRIQKYAASAREKCPDVPLNVHPHLWRHTRAMHLYQHGMDLTLISQWLGHKQLETTL 301

Query: 297 IYTNVNSKNGGDWMMEI 313
           IY + +++     + E 
Sbjct: 302 IYAHADTEAKRKAITEA 318


>gi|153839218|ref|ZP_01991885.1| site-specific recombinase IntIA [Vibrio parahaemolyticus AQ3810]
 gi|308094780|ref|ZP_05892029.2| site-specific recombinase IntIA [Vibrio parahaemolyticus AN-5034]
 gi|308095642|ref|ZP_05907294.2| site-specific recombinase IntIA [Vibrio parahaemolyticus Peru-466]
 gi|308125806|ref|ZP_05777497.2| site-specific recombinase IntIA [Vibrio parahaemolyticus K5030]
 gi|308126623|ref|ZP_05911350.2| site-specific recombinase IntIA [Vibrio parahaemolyticus AQ4037]
 gi|149747246|gb|EDM58234.1| site-specific recombinase IntIA [Vibrio parahaemolyticus AQ3810]
 gi|308086647|gb|EFO36342.1| site-specific recombinase IntIA [Vibrio parahaemolyticus Peru-466]
 gi|308093266|gb|EFO42961.1| site-specific recombinase IntIA [Vibrio parahaemolyticus AN-5034]
 gi|308107453|gb|EFO44993.1| site-specific recombinase IntIA [Vibrio parahaemolyticus AQ4037]
 gi|308111500|gb|EFO49040.1| site-specific recombinase IntIA [Vibrio parahaemolyticus K5030]
          Length = 341

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 81/321 (25%), Positives = 129/321 (40%), Gaps = 61/321 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           R  +  T++SY    ++F++F  F    K        LS  ++  F+S     +K+  ++
Sbjct: 37  RYYANKTIESYLFWIKRFIVFHQFAHPSK--------LSEDDVIRFLSHLAIDEKVAVKT 88

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
              +L+ I    +   K  ++ +   +  +       LP  L   +    V +       
Sbjct: 89  QALALNAISFLYRDFFKTPLSLD---MRFQKSLTEKKLPVVLTRDEVRRFVQH------- 138

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
               ID R    + LLYG GLRI E L L  Q+I  D   +R+ QGKG K R V L   +
Sbjct: 139 ----IDPRYKLHIQLLYGSGLRIMECLRLRIQDIDYDYGAVRVWQGKGGKNRTVTLAKEL 194

Query: 207 RKAILEYYDLCPFDLNLNIQLP--------------------------LFRGI------- 233
            + +    +        +  +P                          LF          
Sbjct: 195 HEPLKSQMNFARNYYFKDRHVPGYAGVYISEGLRRKYPNAELDFNWHFLFPSNKLSVDKE 254

Query: 234 ----RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
               R   +N    QR +++      +  + T HTLRHSFATHLL +G D+R++Q  LGH
Sbjct: 255 TGQLRRHHINESAIQRAVKRSALDANIEKTVTCHTLRHSFATHLLESGADIRTVQEQLGH 314

Query: 290 FRLSTTQIYTNVNSKNGGDWM 310
             + TTQIYT+V  +  G  +
Sbjct: 315 TDVKTTQIYTHVIERGAGGVL 335


>gi|209516758|ref|ZP_03265610.1| integrase family protein [Burkholderia sp. H160]
 gi|209502875|gb|EEA02879.1| integrase family protein [Burkholderia sp. H160]
          Length = 336

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 72/306 (23%), Positives = 120/306 (39%), Gaps = 27/306 (8%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRT 80
           L+ L  ER LS+ T +SY    R  L FL     +     TI  +S   ++AF++   +T
Sbjct: 16  LEYLIKERNLSRNTQKSYRDTFRLLLPFLVRQARKSADRLTIDDVSDQRVKAFLADIEQT 75

Query: 81  QKIGDRSLKRSLSGIKSFLKY---LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +  G  +  + L+ ++S   +        +     I  +   K   S    L + +   L
Sbjct: 76  RHCGVVTRNQRLAALRSLANFIGQNSPEHLQWCGQIRVLPFKKAPRSTITYLEKPEMDEL 135

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM------DDQSTLRIQ 191
                L  +        R+ A+L  LY  G R  EA  +T  ++        D S++ I+
Sbjct: 136 -----LAAAQGPSAQQRRDHALLLFLYNTGARADEAAQVTIADLHVALVPKRDLSSVTIR 190

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG+K+R  PL       I+   D             +F   R  P+        + +  
Sbjct: 191 GKGNKLRQCPLWLQTIAEIVPLIDGR------GSTEHVFLNRRAVPITRFGIHTLVERYV 244

Query: 252 RYLGLP------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +   +          + HTLRH+  THLL  G D+ +I++ LGH  + TT IY   +   
Sbjct: 245 QKAAVKVPSLTLKRVSPHTLRHTAGTHLLRAGVDINTIRAWLGHVSIDTTNIYAETDLAM 304

Query: 306 GGDWMM 311
               + 
Sbjct: 305 KARALA 310


>gi|159046242|ref|YP_001541914.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|157914001|gb|ABV95433.1| phage integrase [Dinoroseobacter shibae DFL 12]
          Length = 295

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 123/293 (41%), Gaps = 30/293 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ  ++++ I RG+     +S+    + F  FL          ++    +  ++RA+   
Sbjct: 10  RQRMIEDMRI-RGMGDKAQKSHIRAIKDFAAFLG---------RSPDTATPEDLRAYQLH 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I   +    +  ++ F      R+         M+   +   LP   + ++   +
Sbjct: 60  MTDTGITPSTFNTRIVALRFFFGMTCGREEMK----RYMQFRTEPRKLPVVFSVEEVSDI 115

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
           +                +  A L + YG GLR +E  +L   +I  D+  + + QGKG K
Sbjct: 116 LMA--------APGPGLKYRAALSISYGAGLRAAEVCNLKIGDIDSDRMLIHVEQGKGQK 167

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLG 255
            R V L P + + +  ++           +  LF G  +  P++P    R     +   G
Sbjct: 168 DRKVMLSPGLLELLRAWWR------ETRPEGWLFPGKPKINPISPRQLNRAFTSAKHMAG 221

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +    T HTLRHSFATHLL    D+R IQ +LGH +L+TT  YT+V +K   D
Sbjct: 222 VKKPATLHTLRHSFATHLLEANTDVRVIQVLLGHAKLTTTARYTHVATKTIRD 274


>gi|51571648|emb|CAH19070.1| DNA integrase [Pseudomonas aeruginosa]
          Length = 305

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 71/324 (21%), Positives = 130/324 (40%), Gaps = 64/324 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVNWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFR 291
           SFAT LL +G D+R++Q +LGH  
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHSD 305


>gi|313887029|ref|ZP_07820729.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923555|gb|EFR34364.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 304

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 142/289 (49%), Gaps = 32/289 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + + L ++R  +  T++SY+     FL  ++ Y        ++ ++  ++I AFI++
Sbjct: 32  LETFEKRLLMQR-YAGNTIRSYKDYASIFLKHVSKYP-------SLEEIPLSDIEAFINE 83

Query: 78  R-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS-NSLPRALNEKQAL 135
           + +  KI     K  +  IK   + +  +KI      L+    K+S + LP+  ++++  
Sbjct: 84  KVQNGKISVSYQKGLVGAIKKMYELILDKKIQ-----LDYLYPKRSFSKLPKFFSKEEVR 138

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKG 194
            ++DN            + ++ AIL  +Y CGLR+SE L+L  ++I      +RI Q KG
Sbjct: 139 NILDNT----------QNLKHKAILMTIYSCGLRLSELLNLKIKDIKSSDGIIRIHQSKG 188

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +K RIV L   +   +  YY           +  LF G +G   +    Q  +++     
Sbjct: 189 NKDRIVSLPDKLLATLRHYYQ------AFKPKEYLFEGEKGGKYSERSVQLILKKALIKA 242

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            +    + HTLRHS+ATHL+ +G D+R ++ +LGH  + TT IYT++  
Sbjct: 243 NVQSEGSVHTLRHSYATHLIQSGIDIRIVKELLGHENIKTTMIYTHITD 291


>gi|158321643|ref|YP_001514150.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
 gi|158141842|gb|ABW20154.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
          Length = 286

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 137/294 (46%), Gaps = 18/294 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +N+L+ LE     SK T++ Y+ +   F  FL      +   + + Q+S  ++  ++  
Sbjct: 7   VENFLRYLESIDR-SKETIKGYKKELGYFGRFLEKKYGFE---KEMEQISSVDLEDYMYY 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            +       +  R +   +S  KY  KR++ T++  + + ++K   +    L+E++ + L
Sbjct: 63  LKKSGKKSATRSRVVYIFRSLYKYSYKRELCTKNLAIFLESVKVKQTERDYLSEEEFILL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDK 196
           +           K   +   A +  ++  GLR+SEAL+LT +N+  D+  +  I GKGDK
Sbjct: 123 IQ----------KINSSIVKAAVQTIFYTGLRVSEALNLTMENVKLDEKIIYTISGKGDK 172

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            RI+P+   +   + +Y      D+  N     F   +   L+P    R +   +  L  
Sbjct: 173 DRIIPISNKLYYILDDYVKNIRPDVESNK---FFCTKKTGSLSPQYINRMLHIAKDSLNW 229

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
             + +AH LRHSFA++L+     L ++Q +LGH  L  T  Y + + +   + +
Sbjct: 230 EKNISAHILRHSFASNLILQNAPLPAVQKLLGHSDLRVTSRYIHQDLRQLEEAV 283


>gi|229145530|ref|ZP_04273914.1| Integrase/recombinase [Bacillus cereus BDRD-ST24]
 gi|228637983|gb|EEK94429.1| Integrase/recombinase [Bacillus cereus BDRD-ST24]
          Length = 326

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 73/299 (24%), Positives = 132/299 (44%), Gaps = 22/299 (7%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           +GL + TL  Y+   +  L  L       + I+   +++   I   I   +  + +   +
Sbjct: 48  KGLREATLFHYQAQLKSLLRAL------PVGIKPY-EVTKEHIEDAIVFCKVKRNLQPST 100

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           +   +   K+F K+L + K    + I +++ LK        L  KQ  TL+         
Sbjct: 101 INIVIRANKTFFKFLFENKHIPINPIKDIKKLKARAKEVEVLTPKQLKTLL-----SKVD 155

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSV 206
              W   R+ AIL +L   GLR +E L+L+  +++ +Q  L ++  K    R VP+  + 
Sbjct: 156 RKTWNGIRDYAILLVLIETGLRQNEILNLSVLDVVWEQDLLLVKHTKTYHQRKVPITDNT 215

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           + A+  +  +            LF GI GK L     ++ I +  +   +    + H  R
Sbjct: 216 KNALKRWLLIRGEVYTKR----LFCGISGKALTNSGLRQMIYKYAKLANIQSRCSPHIFR 271

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           H+FA+  L NGGDL S+Q I+GH  ++ T+ YT+       D + E++ +  P    +D
Sbjct: 272 HTFASIYLRNGGDLFSLQQIMGHSDITMTRRYTHF----MFDDITELHKKYSPLRKLRD 326


>gi|116623840|ref|YP_825996.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227002|gb|ABJ85711.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 297

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 126/299 (42%), Gaps = 37/299 (12%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + + R+  L+ L+  R  ++ T++ Y    + F        ++         L    +R 
Sbjct: 1   MTRLRKMMLEELQ-RRNYAQSTVKGYLRIVQDFAEHFHQQPDK---------LGPEHLRQ 50

Query: 74  FISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + +   R + +   ++++ ++ ++ F     KR    +     +   K+   LP  L+  
Sbjct: 51  YQAHLFRDKHLNAGTVQQYVAALRFFFNKTLKRHYLLDD----IPMPKRHRKLPEILSPD 106

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ- 191
           +   L+              +  +  +L  LY  G+R +E   L   +I   +  + I+ 
Sbjct: 107 EVALLI----------GSASNLLHQTMLMTLYSTGVRRAELCRLKSADIDSQRMMVHIRQ 156

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-----IRGKPLNPGVFQRY 246
           GKG   R VPL P + + +  Y+        +  +  LF G         P+   V    
Sbjct: 157 GKGGHDRDVPLSPRLLETLRVYWRW------MKPKTYLFPGTVNNWRADVPITTKVPWEA 210

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            RQ  +  G+    + HTLRH FA+HLL  G DLR+IQ +LGH +L  T +Y +++ K+
Sbjct: 211 CRQAAQRAGITKHVSPHTLRHCFASHLLEAGTDLRTIQMLLGHAKLEHTAMYLHLSRKH 269


>gi|227461186|gb|ACP39540.1| putative integron integrase [uncultured microorganism]
          Length = 318

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 74/317 (23%), Positives = 131/317 (41%), Gaps = 61/317 (19%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           Q L + +  S  T Q+Y    R+F++               R +   E+ AF++   T+ 
Sbjct: 25  QRLRV-KHYSVRTEQAYVGWIRRFILANGKRHP--------RDMGEREVEAFLTVLATKG 75

Query: 83  -IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +   +  ++LS +    + + K ++     + N+   K+   +P  L+ ++   L+   
Sbjct: 76  NVAAGTQNQALSALLFLYREVPKLEL---PWMENVVRAKRPRRIPAVLSREEVTRLL--- 129

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV 200
                     ++     +  LLYG G+R+ E + L  +++  D+  + ++ GKG K R V
Sbjct: 130 --------AALEGPAWLMAALLYGTGMRLMECIRLRIKDVDFDRGEIVVRNGKGGKDRRV 181

Query: 201 PLLPSVRKAIL------------------------------------EYYDLCPFDLNLN 224
           PL   +R+++                                     E      F     
Sbjct: 182 PLPLRLRESLRAAIEHACLLHASDLADGLGEAWLPHALARKYPNAARETGWQYVFPSPQR 241

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
              P     R   ++  V QR +R  R+   +    T HTLRHSFATHLL  G D+R++Q
Sbjct: 242 SVDPRSGKTRRHHVDDSVLQRAVRSARKLAMIDKPATCHTLRHSFATHLLEAGHDIRTVQ 301

Query: 285 SILGHFRLSTTQIYTNV 301
            +LGH  ++TT IYT+V
Sbjct: 302 ELLGHKDVATTMIYTHV 318


>gi|121583523|ref|YP_973949.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
 gi|120596773|gb|ABM40207.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
          Length = 331

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 77/306 (25%), Positives = 126/306 (41%), Gaps = 31/306 (10%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           PE      +     W  NL+     S  T ++Y+ D R F+ F      E+      R +
Sbjct: 26  PEFARLAEVPPEAQWFANLD-----SAQTRRAYQGDLRAFMAFTGIVQPEE-----FRAV 75

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           +   I A+ ++   Q +   S++R L+ + S   YL +    T + +  ++  K   S  
Sbjct: 76  TRAHILAWRAELEKQNLAGASIRRKLAALASLYDYLCESNAVTHNPVRGVKRPKAETSEG 135

Query: 127 R--ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           +  AL + QA  L     L           R+ AIL +L    LR  E   L  ++   +
Sbjct: 136 KTPALGDAQARAL-----LGAPPSDTLKGKRDRAILSVLLYHALRREELTKLLVKDFAQE 190

Query: 185 QS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---- 237
           +     LR+QGKG K+R +P  P   + + EY          +   PLFR  R       
Sbjct: 191 RRGVPHLRVQGKGGKLRYLPAHPHSLRLVAEYLAASGHGQEADS--PLFRRTRAPRAGAL 248

Query: 238 ---LNPGVFQR-YIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
              L PG      + +    +G+   +   H LR + AT+ L +  D+  +Q  LGH  +
Sbjct: 249 ASALTPGSVYADVVVRYMAQVGIAGENMGPHALRATAATNALEHQADIAKVQEWLGHASI 308

Query: 293 STTQIY 298
           STT++Y
Sbjct: 309 STTRVY 314


>gi|126668746|ref|ZP_01739695.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126669114|ref|ZP_01740043.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126626410|gb|EAZ97078.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126626783|gb|EAZ97431.1| integrase/recombinase [Marinobacter sp. ELB17]
          Length = 338

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 71/317 (22%), Positives = 130/317 (41%), Gaps = 23/317 (7%)

Query: 14  LLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           LL   +++    L+  RG S  T+++Y    R   I+LA   +  +    +  L    + 
Sbjct: 9   LLACVESFFRDYLQRLRGASAHTVRAYRDTLRLLFIYLADTKDSTVANLRLNDLHVDAVA 68

Query: 73  AFISKRRTQKI-GDRSLKRSLSGIKSFLKYLKKRKITTESN---ILNMRNLKKSNSLPRA 128
           AF+++  + +     +     + I+SF K+L +  +        IL +   K   +L   
Sbjct: 69  AFLTQLESDRANSIATRNCRRAAIRSFCKHLIRVDLPHAEQYQRILALPAKKCQQNLATY 128

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-ST 187
           L   +   ++D            +  R+  +L  LY  G RISEAL++   ++       
Sbjct: 129 LEAAEVHAILDQ-----PDCRTVLGQRDYGLLLFLYNTGARISEALTVCCADLHLTPPRQ 183

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           +R+ GKG K R+ PL     +A+L    +     +      +F   +G+PL        +
Sbjct: 184 VRLHGKGKKDRLCPLWRDTAQALLRLPTVR----DGAPGAFVFVNRQGQPLTRDGAAYLL 239

Query: 248 RQLRRYLGLP-------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           ++      +P          T H LRHS A  LL +G D+  I+  LGH  ++TT  Y  
Sbjct: 240 QKYVVAA-IPTAPTLQRRKITPHVLRHSCAVALLQSGVDVTVIRDYLGHASIATTSRYLT 298

Query: 301 VNSKNGGDWMMEIYDQT 317
            N +   + +   + + 
Sbjct: 299 TNLQMKREALEAFWKRA 315


>gi|188026430|ref|ZP_02997899.1| hypothetical protein PROSTU_04138 [Providencia stuartii ATCC 25827]
 gi|291326773|ref|ZP_06125806.2| glutamine amidotransferase, class I [Providencia rettgeri DSM 1131]
 gi|188019829|gb|EDU57869.1| hypothetical protein PROSTU_04138 [Providencia stuartii ATCC 25827]
 gi|291312882|gb|EFE53335.1| glutamine amidotransferase, class I [Providencia rettgeri DSM 1131]
          Length = 337

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 67/323 (20%), Positives = 128/323 (39%), Gaps = 27/323 (8%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           + ++ PEIV       +Q + + L  +R LS  T+  Y    + FL F       +    
Sbjct: 8   KQSSFPEIV-------QQFFTEYLVAQRALSPQTIACYRDALKLFLEFATSQLHRQPVAM 60

Query: 62  TIRQLSYTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKIT---TESNILNMR 117
            +  ++   I  F+      ++   RS    L+ +++FL++  +R IT   T    LN+ 
Sbjct: 61  KLEDITPDLILKFLDNLELERQNTVRSRNLRLTALRTFLRFAGRRDITALHTVERALNVP 120

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             +    L   L   + + ++       +    W   R+  +  ++Y  G R+SE +++ 
Sbjct: 121 MKRFDQPLIGHLTRPEIIAIL------GAPGDDWTSQRDHLLFTIIYNTGARVSEVINIR 174

Query: 178 PQNIMDDQS-TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
             +++ D S  + + GKG + R +PL  S    I  +        N++    L     G+
Sbjct: 175 VVDVVLDGSACVHLNGKGRRKRSIPLWKSTVGIIRAWLRTNQ---NMHGDAALLPARSGQ 231

Query: 237 PLNPGVFQRYIRQLRRYLGLP------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
           P+      + +                   + H LRH+ A HLL +G     I   LGH 
Sbjct: 232 PMTRANVAQRLALAVNRAAATQPSLKTKRVSPHVLRHTTAMHLLQSGVSFNLIALWLGHE 291

Query: 291 RLSTTQIYTNVNSKNGGDWMMEI 313
            ++TT  Y   N +   + +  +
Sbjct: 292 SVNTTHRYVEANLQMKEEVLSRL 314


>gi|330974049|gb|EGH74115.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 320

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 69/277 (24%), Positives = 125/277 (45%), Gaps = 23/277 (8%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T ++Y+ D   F  F+        +    R ++ + + A+ +    + +   +++R L
Sbjct: 39  PRTRRAYQNDLTDFSSFIGL-----ASADDFRLVTRSHVLAWRADLEHRGLAGATIRRKL 93

Query: 93  SGIKSFLKYLKKRKITTE-SNILNMRNLKKSN---SLPRALNEKQALTLVDNVLLHTSHE 148
           + + S   +L +       + +  ++  K  +     P AL + QA  L+D        E
Sbjct: 94  AALASLFDHLLENNAIAGGNPVHGVKRPKIESNEGKTP-ALGDHQAKALLD-----APDE 147

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSV 206
           +     R+ AIL +L   GLR  EA  L   +I + +    L+I GKG K+R +PL P  
Sbjct: 148 STLKGLRDRAILAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKGGKVRYLPLHPVA 207

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKP----LNPGVFQRYIRQLRRYLGLPL-STT 261
              I  Y +     L+ + ++PLF  +RGKP    ++       +    +  G+ +    
Sbjct: 208 AGRIHLYLERSGHHLD-DKKVPLFIPLRGKPTGAGVSANGIYTVVEAYAKKAGIEVAGLG 266

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            H LR + AT+ L +  D+  +Q+ LGH  +STT+IY
Sbjct: 267 VHGLRATAATNALDHEADIAKVQAWLGHANISTTKIY 303


>gi|302389856|ref|YP_003825677.1| integrase family protein [Thermosediminibacter oceani DSM 16646]
 gi|302200484|gb|ADL08054.1| integrase family protein [Thermosediminibacter oceani DSM 16646]
          Length = 323

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 66/330 (20%), Positives = 133/330 (40%), Gaps = 46/330 (13%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           + +N+L      + LSK T+ SYE   R F  FL     EK  I+ + +++   IR ++ 
Sbjct: 7   QIENFLLYCNA-KNLSKRTIGSYEQSLRLFAQFLK----EKYGIEEVSKVNTGHIRQYLD 61

Query: 77  KRRTQK-------------------------IGDRSLKRSLSGIKSFLKYLKKRKITTES 111
               +                          +   +    L  +K F  +L       ++
Sbjct: 62  YLGKRGKYTVIIDETKKEINNPENRQDFGQPLSTTTKANYLRNLKVFFNWLYGEGEIPKN 121

Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
            +  +  +K    + + L+E+    + +  +     ++ +   RN  I   L   G RI 
Sbjct: 122 PVAKIEQIKPQRKVKKPLSEQDLKRIANCFV-----KSTFTGYRNYVIFKFLLDTGARIQ 176

Query: 172 EALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
           E LSLT  +I      + ++  K  + R V L P + + +  +       ++ ++   +F
Sbjct: 177 ETLSLTHNDIDLKFRVVTLRNTKNKQERKVYLSPKMLQEMKNWLKYKERYVSSDL---IF 233

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
              RG PL    +++ +R   + +G+    + H LR+ FA + + NGG+   +  +LGH 
Sbjct: 234 PTKRGTPLTVHSYEKQLRDAGKLVGID--ISPHMLRNQFARYYILNGGNFPMLSKLLGHS 291

Query: 291 RLSTTQ-IYTNVNSKNGGDWMMEIYDQTHP 319
            +  T   Y ++  ++    + + Y Q  P
Sbjct: 292 DVKVTMDAYMDLLDED----IKKDYMQHSP 317


>gi|213422078|ref|ZP_03355144.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 166

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 63/170 (37%), Positives = 92/170 (54%), Gaps = 6/170 (3%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG+K R+VPL       +  Y
Sbjct: 1   MRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETY 60

Query: 214 Y-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFAT 271
                P+ LN      LF   R + +    F   I+      G+     + H LRH+FAT
Sbjct: 61  LEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFAT 120

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           HLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++ Q HP  
Sbjct: 121 HLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQHHPRA 166


>gi|254422709|ref|ZP_05036427.1| integron integrase subfamily [Synechococcus sp. PCC 7335]
 gi|196190198|gb|EDX85162.1| integron integrase subfamily [Synechococcus sp. PCC 7335]
          Length = 302

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 74/308 (24%), Positives = 125/308 (40%), Gaps = 60/308 (19%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSLKRSLS 93
           T +SY    R +++F      +K+          +EIRA++S   T + +   +   +LS
Sbjct: 3   TEKSYVYYIRDYILFHNKQHPKKMG--------ASEIRAYLSHLATVRHVAASTQTVALS 54

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            +    + +          I N+   K+   LP      + + ++ N           +D
Sbjct: 55  ALLFLYRQVLG---IELPYIDNIERAKRPQRLPVVFTRSEVMRILAN-----------LD 100

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRK---- 208
             N  ++ LLYG G+R+ E L L  ++I  +   + ++ GKG K R   L  SV +    
Sbjct: 101 GINHLVVSLLYGTGMRLMEGLRLRVKDIDFEYRHITVRDGKGKKDRHTLLPESVIQPLQH 160

Query: 209 --------------------------------AILEYYDLCPFDLNLNIQLPLFRGIRGK 236
                                           A  E+     F        P  + +R  
Sbjct: 161 QLKKAKHLHEQDLAVGYGTVELPYALARKYPSAHKEWKWQFVFPSGKRSLDPRSKVVRRH 220

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L     QR +++  +   +  +   HTLRHSFATHLL +G D+R++Q +LGH  + TT 
Sbjct: 221 HLYEQSVQRAVKKAIQKAEITKNGGCHTLRHSFATHLLEDGYDIRTVQELLGHKDVKTTM 280

Query: 297 IYTNVNSK 304
           IYT+V +K
Sbjct: 281 IYTHVLNK 288


>gi|134287704|ref|YP_001109870.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134132354|gb|ABO60089.1| phage integrase family protein [Burkholderia vietnamiensis G4]
          Length = 291

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 76/307 (24%), Positives = 128/307 (41%), Gaps = 33/307 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ  + ++ + R  +  T   Y    ++F  FL          ++    +  ++R +   
Sbjct: 12  RQRMIDDMRM-RKFTAKTQNGYLRAVKRFAGFLG---------RSPDTATVEDLRWYQLH 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    SL  +++G+K F      R       +  M+ ++    LP  L+ ++   L
Sbjct: 62  LVDTGTSPISLNAAIAGLKFFFDVTLDRAEL----MAKMQPVRVPQRLPVVLSREEVGRL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
           +              + ++   L L YG GLR SE ++L   +I   + TLR+ QGKG K
Sbjct: 118 IAAS----------GNLKHQTALSLAYGTGLRASEVVALKVCDIDSQRMTLRVEQGKGRK 167

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRRYLG 255
            R   L P + + +  ++ +      +     LF G+     L+     R I        
Sbjct: 168 DRYAMLSPVLLERLRVWWRVARAQGKMLDGGWLFPGLNPIESLSTRQLNRAIHAAAAEAK 227

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY- 314
           +    + HTLRH FATHLL    D+R IQ +LGH +L TT +YT V +    D + E+  
Sbjct: 228 IDKRVSMHTLRHCFATHLLEQKVDIRVIQVLLGHKQLDTTALYTQVAT----DLLREVVS 283

Query: 315 --DQTHP 319
             +  HP
Sbjct: 284 PLEMLHP 290


>gi|295696281|ref|YP_003589519.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295696714|ref|YP_003589952.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295411883|gb|ADG06375.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295412316|gb|ADG06808.1| integrase family protein [Bacillus tusciae DSM 2912]
          Length = 293

 Score =  169 bits (427), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 123/289 (42%), Gaps = 30/289 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q   ++L + RGLS  T+  Y    R FL F           + + QL   + R F+  
Sbjct: 8   LQQMTEDLRL-RGLSPNTVDVYTRAARIFLEFCK---------RPVDQLDVQDARRFLLF 57

Query: 78  RR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               +K    ++    + ++        R      N L +   K   +LP+ L+  +  +
Sbjct: 58  LICEKKRSAATVNVYNAAVRFLFAVTLNRTF----NPLQIPRQKMPKTLPQVLSRPEIAS 113

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGD 195
           ++++            + ++ A+  L+YG GLR+SEA ++  Q+I      + +QG KG 
Sbjct: 114 ILEHC----------HNLKHKALFALIYGSGLRVSEAAAIKTQHIDSRTMRVFVQGGKGA 163

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYL 254
           K R   L  +  + + EY+         + +  LF G      +      R      +  
Sbjct: 164 KDRYTVLSHTALQLLREYWKAYRP---THPEGWLFLGTYSLAHITSAAISRAFGDALKRA 220

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            +    + H+LRHSFATHLL +G  L  I+ +LGH  + +T +Y ++ +
Sbjct: 221 QISKEVSIHSLRHSFATHLLEDGVSLLQIKELLGHASIRSTTVYLHLAN 269


>gi|289579058|ref|YP_003477685.1| integrase [Thermoanaerobacter italicus Ab9]
 gi|289528771|gb|ADD03123.1| integrase family protein [Thermoanaerobacter italicus Ab9]
          Length = 291

 Score =  169 bits (427), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 75/308 (24%), Positives = 137/308 (44%), Gaps = 27/308 (8%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +   + +   L+ + G S  T++SY  D  +FL +      ++   + + Q    E R +
Sbjct: 1   MDWVEKYRDVLQ-QSGKSTNTVESYISDINEFLRWFGDTYGKEFDGRILEQ-DAREYRNY 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +      K+   S+ R ++ +K+F ++L +    TE+NI  +      +   R ++  + 
Sbjct: 59  L--LNIIKLKPSSINRKMAALKNFNQFLIQTGTGTEANICGISVADIHDREIRTISRNEL 116

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-------- 186
             L   V    +         + A++ LL G G+R+SE +SLT Q+I   +         
Sbjct: 117 NRLKRAVYASGNKR-------DIALIELLIGTGVRVSELVSLTIQDIHLTERNGSQNYSY 169

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            +   GKG K R +PL   V+KA+ EY  + P     +    +F G RG PL      + 
Sbjct: 170 IVIRNGKGGKYREIPLNSQVKKALEEYLAIRP-----SSSDRIFIGQRG-PLRRESVDKI 223

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKN 305
           I++  R  G+    +AH LRH+F T L+  G  +  +  + GH  + TT   Y  V+  +
Sbjct: 224 IKKYCRISGIE-EISAHVLRHTFCTRLVQEGTPIPVVSKLAGHSNVQTTMDFYVRVSRAD 282

Query: 306 GGDWMMEI 313
               + ++
Sbjct: 283 KIAAVEKL 290


>gi|152993773|ref|YP_001359494.1| phage integrase family site specific recombinase [Sulfurovum sp.
           NBC37-1]
 gi|151425634|dbj|BAF73137.1| site-specific recombinase, phage integrase family [Sulfurovum sp.
           NBC37-1]
          Length = 280

 Score =  169 bits (427), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 93/315 (29%), Positives = 155/315 (49%), Gaps = 38/315 (12%)

Query: 10  VSFELLKER-QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++ E LKE  + +L  L   RG S++++ +YE   RQ      FY E+ I++  I    +
Sbjct: 1   MNNEKLKEYIETFLDYLLDVRGYSEVSVTTYEIALRQMSGVSHFYEEDGISVLDITPFRF 60

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +          K   +++ + LS ++SF+KYL+ +       I +  ++K   SLP+ 
Sbjct: 61  NIV----------KNSKKTIVKKLSAVRSFVKYLEDQCNIPVKLIAD-ESIKVPQSLPKP 109

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           + E      ++ VL   + E K        ++ +LYG GLRISE   L  ++I  +   +
Sbjct: 110 IEE----QYIEEVLAKANVEEK-------LLISMLYGLGLRISELSGLKLEDIKGE--WI 156

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           +I GKG+K+R +PL+ S++K I  Y D          +  LF      P+N    +  + 
Sbjct: 157 QIHGKGNKVRELPLMKSLQKLIGVYMDQN------GPKRYLFE-KGNAPMNAAQLRYKLT 209

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +L +  GL    T H LRHSFATHLL++G  +  +  +LGH  ++TTQ+YT +    G  
Sbjct: 210 KLFKKEGL--KVTPHQLRHSFATHLLNHGARIADVSELLGHETMATTQVYTKL----GSV 263

Query: 309 WMMEIYDQTHPSITQ 323
             M+ Y   HP   +
Sbjct: 264 KKMQEYMSAHPLADK 278


>gi|114331357|ref|YP_747579.1| integron integrase [Nitrosomonas eutropha C91]
 gi|114308371|gb|ABI59614.1| integron integrase [Nitrosomonas eutropha C91]
          Length = 329

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 71/345 (20%), Positives = 134/345 (38%), Gaps = 61/345 (17%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N +P   +    K        L + +  S  T   Y    R+F++F      +++     
Sbjct: 2   NKMPPSHAPTSPKLLDQLRDKLRL-KHYSIRTEVQYVQWVRRFILFHDKRHPQEMG---- 56

Query: 64  RQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
                 E+ AF++       +   +  ++LS +    + + +  +    N++     K+ 
Sbjct: 57  ----AGEVEAFLTHLAVSGRVAASTQNQALSALLFLYREVLEIDLPWLDNVVRA---KRP 109

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             LP  L   +   ++             +   +  +  LLYG G+R+ E + L  +++ 
Sbjct: 110 ARLPVVLTHNEIQAVL-----------GRMTGAHGLMARLLYGTGMRLMECVRLRVKDVD 158

Query: 183 DDQSTLRIQ-GKGDKIRIVPLLPSVR---------------------------------- 207
            +++ + ++ GKG K R+  L  S+                                   
Sbjct: 159 FERAEILVRDGKGAKDRVTMLPQSLIPVLNEHIRHRRLLYEDDLAKDMAAVYLPDALERK 218

Query: 208 --KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
             KA  ++     F        P     R   ++  + QR +++     G+    T HTL
Sbjct: 219 YPKAATDWIWQYIFVAKSYSVDPRSGVERRHHMDEKLLQRAMKKAVLAAGVTKPATPHTL 278

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           RHSFATHLL  G D+R++Q +LGH  ++TT IYT+V +K G   +
Sbjct: 279 RHSFATHLLQAGYDIRTVQELLGHSDVATTMIYTHVLNKGGKGVI 323


>gi|149191778|ref|ZP_01870016.1| site-specific recombinase IntI4 [Vibrio shilonii AK1]
 gi|148834358|gb|EDL51357.1| site-specific recombinase IntI4 [Vibrio shilonii AK1]
          Length = 321

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 84/327 (25%), Positives = 140/327 (42%), Gaps = 67/327 (20%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N++++    R  S+ T+ +Y     Q++++           +  +++S  E+  F+S   
Sbjct: 7   NYIRDFMRARHYSERTIDAYLSWIFQYIVYH--------DKKHPKEMSTAEVEDFLSYLI 58

Query: 80  T-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLK--KSNSLPRALNEKQAL 135
           T + +  R+  ++L+ +    K+           I +NMR  K  KS  LP  L  K+  
Sbjct: 59  TSRNLAMRTQNQALNALVFLYKH------ILHDPIDVNMRFKKSNKSKKLPTVLTVKEVS 112

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKG 194
            +++++L +                 L YG GLR+ E L L  Q+I  D   LRI + KG
Sbjct: 113 KVLESMLPNFLLPA-----------QLKYGSGLRLMECLRLRYQDIDFDYGALRIWRAKG 161

Query: 195 DKIRIVPLLP-----------------------------SVRKAILEYYDLCPFDLNLNI 225
           +K R+V L                                +  A+   Y     +LN   
Sbjct: 162 NKNRVVTLARELFPAIRRQQQHVESIWRQDVKQSDYSGVWLPNALATKYPNSNKELNWQF 221

Query: 226 QLPLFRG--------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
             P  R         IR   +N    Q+ ++   +  G+    + HTLRHSFATHLL +G
Sbjct: 222 LFPSARLSIDPTSNLIRRHHINESSVQKALKSAVKKTGIEKRVSCHTLRHSFATHLLESG 281

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSK 304
            D+R++Q  LGH  L TTQ+YT+V ++
Sbjct: 282 ADIRTVQEQLGHTDLKTTQVYTHVINR 308


>gi|12642607|gb|AAK00307.1|AF314191_1 integrase IntI6 [uncultured bacterium PG2]
          Length = 305

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 71/311 (22%), Positives = 124/311 (39%), Gaps = 60/311 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRS 87
           +  S  T +SY    R+F++F              R ++  EIR F+S   +   +   +
Sbjct: 17  KHFSLRTERSYVYWIRRFILFHDKRHP--------RDMAEPEIRDFLSHLASHDNVAAPT 68

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++LS +    + +   ++       ++   K+   +P  L   + L L+         
Sbjct: 69  QNQALSALLFLYRDVLGIRLRYMD---DIERAKRPTRVPTVLTRSEVLALL--------- 116

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
               +      +  LLYG GLR+ E L L  +++    + + I+ GKG+K R+  L   +
Sbjct: 117 --GKLTGTFYIMTSLLYGSGLRLMECLRLRVKDLDFHYNQITIRDGKGNKDRVTMLPAPL 174

Query: 207 RKAI------------------------------------LEYYDLCPFDLNLNIQLPLF 230
           + A+                                     E+     F        P  
Sbjct: 175 KPALELHLKRVKLLHEEDLSGGFGEVFLPHALDRKYPNASREWAWQYVFPAGKRSIDPRS 234

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
              R   ++  V +R ++      G+    + HTLRHSFATHLL +G D+R++Q +LGH 
Sbjct: 235 GKQRRHHVSESVLRRVVKDAVSRAGIAKPASCHTLRHSFATHLLEDGYDIRTVQELLGHK 294

Query: 291 RLSTTQIYTNV 301
            +STT IYT+V
Sbjct: 295 DVSTTMIYTHV 305


>gi|254431901|ref|ZP_05045604.1| integron integrase [Cyanobium sp. PCC 7001]
 gi|197626354|gb|EDY38913.1| integron integrase [Cyanobium sp. PCC 7001]
          Length = 325

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 75/336 (22%), Positives = 141/336 (41%), Gaps = 65/336 (19%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           PE     L+   Q + + L+  R  ++ T+++YE   R+FL F          ++  R++
Sbjct: 5   PEAKPAGLI---QRYREELQT-RHYARRTVKTYELWLRRFLRFH--------NLRHPREM 52

Query: 67  SYTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
              E+ +F++      ++   +  ++L+ +    + L  R +  +     +   +    L
Sbjct: 53  GSAEVNSFLTHLAVDLQVSPSTQNQALAALLFLYRELLDRDLELD----GVVRARNRRRL 108

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P  L+E +   + D++    +            ++ LLYG GLR+ EAL L  +++  ++
Sbjct: 109 PVVLSEAEVRAVRDHLEGDPA-----------LVVGLLYGSGLRLMEALRLRVKDLDFER 157

Query: 186 STLRIQ-GKGDKIRIVPLLPSVRKAI---------------------------------- 210
             L ++ GKG K R+  L  S+   +                                  
Sbjct: 158 RELSVRDGKGGKDRLTLLPQSLVADLKHHLLGVRRLHRLDLAAGWGQVLMPHALARKYPN 217

Query: 211 --LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
              E+     F                  L+P + Q+ +++     G+  + + HT RHS
Sbjct: 218 AAREWAWQWVFPQEHRWHDRTSGTQGRHHLDPSLVQKAVKRAVTAAGVSKAASCHTFRHS 277

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           FATHLL  G D+R+IQ +LGH  +STT IYT+V ++
Sbjct: 278 FATHLLERGQDIRTIQELLGHKDVSTTMIYTHVLNR 313


>gi|309805934|ref|ZP_07699964.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 03V1-b]
 gi|309807630|ref|ZP_07701574.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
 gi|308167673|gb|EFO69822.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 03V1-b]
 gi|308169127|gb|EFO71201.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
          Length = 204

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 102/207 (49%), Gaps = 11/207 (5%)

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
             +LP  L   + + ++ ++       T  +  RN A+L L Y  G+R+SE  +L    +
Sbjct: 5   HKNLPEFLYSDEMVKVLKSI-----STTTPLGLRNMALLELFYATGMRVSEIANLKLDQV 59

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLN 239
             + + + + GKG+K R V      + A+  Y       L L+      +F    G  + 
Sbjct: 60  DFELNLILVHGKGNKDRYVAFGEEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNMIT 119

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               +  I+ +    G+  S   H LRH+FAT +L+NG DLR++Q +LGH  +STTQIYT
Sbjct: 120 SRGLEYIIKNIFLNAGISASVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYT 179

Query: 300 NVNSKNGGDWMMEIYDQTHPSITQKDK 326
           +V  ++    + +IY +  P   ++++
Sbjct: 180 HVTKQH----LCDIYHKYFPRDNKENE 202


>gi|228910970|ref|ZP_04074778.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           IBL 200]
 gi|228848625|gb|EEM93471.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           IBL 200]
          Length = 322

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 60/290 (20%), Positives = 127/290 (43%), Gaps = 16/290 (5%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G  K T+  Y    R F+         ++ I  +  ++   ++ +I+K  ++++   ++ 
Sbjct: 41  GFRKRTIDDYTKLFRYFM--------RELNIDKVEIITAKHVQMYINKLISRELAPATVN 92

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             +S +KS  K L ++     +  ++   L+   +    LN  Q   L   V      +T
Sbjct: 93  IRISALKSVFKRLHEQGYIKSNPAVDFVKLRTDEAPIFTLNNNQIKRLFCVV-----DKT 147

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
            +   R+   + L+  CGLR++E   L   ++  D  T+ + G  +K R    +P  +K 
Sbjct: 148 TYAGYRDYCAMLLMLHCGLRVNEVNQLEANDLDFDNLTIMLSGAKNKNRKTRAVPMTKKV 207

Query: 210 ILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST--TAHTLR 266
             E   L         +   +F    G  ++  + ++ + +  ++ GL      + H+LR
Sbjct: 208 AEELRMLIEESREYFEVTTNVFLTHDGNSIDNDLLRKRMYRYGQFAGLSKECRPSPHSLR 267

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           H+FAT+ L NGG + ++  I+GH  ++TT  Y  +N +   +   ++  +
Sbjct: 268 HTFATNFLRNGGSVNALMRIMGHADITTTMRYVRLNDEAVKEQYEKVAAK 317


>gi|10954856|ref|NP_053276.1| hypothetical protein pTi-SAKURA_p038 [Agrobacterium tumefaciens]
 gi|6498209|dbj|BAA87661.1| tiorf36 [Agrobacterium tumefaciens]
          Length = 331

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 65/316 (20%), Positives = 120/316 (37%), Gaps = 21/316 (6%)

Query: 10  VSFELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++  L +  + +  Q L  +R +S  T+ SY    + FL F    T ++ +   +     
Sbjct: 1   MTSSLPRLIERFFTQRLMRQRNVSTHTVASYRDTFKLFLRFAHRKTGKQPSSLMLEDFDA 60

Query: 69  TEIRAFISKRRTQKIG-DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS---NS 124
             + AF+     ++     +    L+ I++F ++L   + T    I  +  +        
Sbjct: 61  ELVIAFLDDLTAERRSGTATYNLRLTAIRAFFRFLAFEEPTVSHQIQRVLAIPGKIGTRR 120

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
             + L   +   L+            WI  R+  +L      G+R+SE + L    +  D
Sbjct: 121 EVQFLVRDEIKALL-----AAPDRRLWIGRRDYCLLLTAIQTGMRLSELVGLDRGAVTLD 175

Query: 185 QS-TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
               +R  GKG K R+ PL   +   + ++ D    +  L     LF  + G  ++P   
Sbjct: 176 TGAHIRCFGKGRKERVTPLTKILSSVLKQWLD----EPRLGQSDILFPTVHGSRMSPDAV 231

Query: 244 QRYIRQLRRYLGLP------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           Q  + +  +              + H LRHS A  LL  G D   I   LGH    +TQ 
Sbjct: 232 QYLLAKHVKQAAQQYPSLRAKRISPHVLRHSAAMELLDAGVDSTVISLWLGHESTRSTQA 291

Query: 298 YTNVNSKNGGDWMMEI 313
           Y + +    G  + ++
Sbjct: 292 YLHAHLAIKGAALAKV 307


>gi|60550189|gb|AAX24191.1| integrase [Xanthomonas campestris pv. begoniae]
 gi|60550194|gb|AAX24195.1| integrase [Xanthomonas campestris pv. begoniae]
          Length = 339

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 76/337 (22%), Positives = 134/337 (39%), Gaps = 64/337 (18%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
            N +       LL + ++ L+     R  S  T Q+Y    R+F++            + 
Sbjct: 7   NNGVTAPPPLRLLDQVRDRLR----VRHYSLRTEQAYVSWIRRFILANGK--------RD 54

Query: 63  IRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
             Q+   E+ AF+++  T   +   +  ++L+ +    + + +        + N+   K+
Sbjct: 55  PAQMGQAEVEAFLTRLATDGRVSAGTQNQALAALLFLYREVLR---IELPWMENLVRAKR 111

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              +P  L  ++   L+             ++     +  L YG G+R+ E L L   ++
Sbjct: 112 PRRIPAVLWREEVARLL-----------AVLEGPCWLMASLPYGSGMRMMECLRLRIMDV 160

Query: 182 MDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY-------------------------- 214
              +  + ++ GKG K R VPL  S+RKA+                              
Sbjct: 161 DAARGEMLVRDGKGGKDRRVPLPHSLRKALQRKRERALLVHVADLAAGAGRVFLPHALAR 220

Query: 215 ----------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
                         F      + P         ++  + QR ++  R+  G+    T HT
Sbjct: 221 KYPNADVEPGWQYLFPSARRSRDPRSGRPGRHHVSEEILQRAVQSARQQAGIVKPATCHT 280

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LRHSFATHLL  G D+R++Q +LGH  +STTQIYT+V
Sbjct: 281 LRHSFATHLLEAGHDIRTVQELLGHKDVSTTQIYTHV 317


>gi|307269737|ref|ZP_07551067.1| phage integrase, SAM-like domain protein [Enterococcus faecalis
           TX4248]
 gi|306513847|gb|EFM82449.1| phage integrase, SAM-like domain protein [Enterococcus faecalis
           TX4248]
          Length = 301

 Score =  168 bits (426), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 71/284 (25%), Positives = 137/284 (48%), Gaps = 13/284 (4%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RG SK+T+++Y+   R    F      E +      QL    I+++I   + +++   ++
Sbjct: 17  RGFSKITIKNYKSKLRNTANFFKSINVEPL------QLEKKHIKSWIIDMQEKEMQASTI 70

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
             S+S +K    Y+   K    +  +++  LK+   +   LN+ +   ++    +   H 
Sbjct: 71  NVSVSRLKKLFDYMLIEKYIDYNPFVDIERLKEQRKVIYPLNDYEIKQML---TVAKKHP 127

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
            K I  RN  IL L+  CGLRISE   +  ++IM++Q  +R + K +K R V + P ++K
Sbjct: 128 YKHIAQRNVVILMLMIECGLRISEVCEIRDEDIMNNQIIIR-KSKNNKDRAVAVSPILKK 186

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST--TAHTLR 266
            I++Y  +      L           GK LN     + ++++++ + +      + HTLR
Sbjct: 187 EIIKYQRIKKRKYGLLEGNLFIVSNLGKKLNEKSIWQIMQEIKKQIDIRDCVRFSGHTLR 246

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN-VNSKNGGDW 309
           H++A+  L NG D+ ++   +GH  +  TQ Y   +NS++  + 
Sbjct: 247 HTYASMQLRNGLDIYTLSLNMGHSSIEMTQRYVQTLNSEDFIEK 290


>gi|228923867|ref|ZP_04087144.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228948859|ref|ZP_04111134.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228810821|gb|EEM57167.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228835666|gb|EEM81030.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 322

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 63/290 (21%), Positives = 127/290 (43%), Gaps = 16/290 (5%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G  K T+  Y   T+ F  F+     EK+ I     ++   ++ +I+K  ++++   ++ 
Sbjct: 41  GFRKRTIDDY---TKLFHYFMRELNIEKVEI-----ITAKHVQMYINKLLSRELAPATIN 92

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             +S +KS  K L ++     +  ++   L+   +    LN  Q   L   V      +T
Sbjct: 93  IRISALKSVFKRLHEQGYIKSNPAVDFVKLRTDEAPIFTLNNNQIKRLFRVV-----DKT 147

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
            +   R+   + L+  CGLR++E   L   ++  D  T+ + G  +K R    +P  +K 
Sbjct: 148 TYAGYRDYCAMLLMLHCGLRVNEVNQLEANDLDFDNLTIMLSGAKNKNRKTRAVPMTKKI 207

Query: 210 ILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST--TAHTLR 266
             E   L             +F    G  ++  + ++ + +  +  GL      + H+LR
Sbjct: 208 AEELRMLIDESREYFEGTTNVFLTQDGNSIDNDLLRKRMYRYGQLAGLSKECRPSPHSLR 267

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           H+FAT+ L NGG + ++  I+GH  ++TT  Y  +N +   +   ++  +
Sbjct: 268 HTFATNFLRNGGSVNALMRIMGHADITTTMRYVRLNDEAVKEQYEKVAAK 317


>gi|91200146|emb|CAJ73190.1| similar to site-specific tyrosine recombinase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 357

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 70/313 (22%), Positives = 131/313 (41%), Gaps = 60/313 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           R  S+ T Q+Y    ++F+ F          ++   +++  EI  F++     +K+   +
Sbjct: 29  RHYSRRTEQTYCHWVKRFIFFHK--------VRHPAEMAEPEINDFLTHLAVKEKVSAST 80

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++LS +    +++  R++     +  +   +K   LP  +   +   ++ N+      
Sbjct: 81  QNQALSALLFLYRHVIGREVGD---LGKVIRARKPTRLPVVMTRDEVKAVLSNL-----S 132

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
           E KW+      I  L+YG GLR+ E L L  Q+I   ++ + ++ GKG K RI  L   +
Sbjct: 133 EDKWL------IASLMYGAGLRLMECLRLRVQDIDFSRNEILVRDGKGAKDRITMLPELL 186

Query: 207 RKAILE------------------------------------YYDLCPFDLNLNIQLPLF 230
           +K + +                                    +     F      +    
Sbjct: 187 KKPLQDHLRKVKAIHEKDLAEGWGRVQMPDALDRKYPNAPADWRWQWVFPQENRWKNTKT 246

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
                  ++  + QR +++     G+    + HT RHSFATHLL +G D+R+IQ +LGH 
Sbjct: 247 TEEGRHHMDESIMQRTVKEAVTSSGITKRASCHTFRHSFATHLLESGYDIRTIQELLGHK 306

Query: 291 RLSTTQIYTNVNS 303
            + TT IYT+V +
Sbjct: 307 DVKTTMIYTHVLN 319


>gi|330994896|ref|ZP_08318818.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
 gi|329758157|gb|EGG74679.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
          Length = 291

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 80/303 (26%), Positives = 134/303 (44%), Gaps = 39/303 (12%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           E    P+  +  LL   + WL N    RG  + T ++YE D R FL  +          +
Sbjct: 13  EAQKAPQNSADNLL--IKTWLHN----RG--ENTRRAYESDVRAFLAHVG---------K 55

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           T+ +++  +++ +          D + +R L  +KS L Y    ++        +R  K 
Sbjct: 56  TLPEVTAPDLQNWFDSLTG---ADATRRRKLMAVKSLLSYGAAMEMLPRDVGPAVRIPKG 112

Query: 122 SNSLP-RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
            +SL  R L ++Q   L+D             D R   +L +LY  GLRISE  ++  ++
Sbjct: 113 RDSLHERILTQEQVRALIDGE----------TDPRRRVMLRVLYATGLRISELCAVRWKD 162

Query: 181 IMDDQ--STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           +   Q      + GKG K R V +   V K I+         ++   + P+  G  G PL
Sbjct: 163 LKRRQQGGVAHVFGKGGKNRTVEIPAKVWKEIVA------LRVDSRPEAPMVPGHDGGPL 216

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +     R +++  +  GLP   +AH LRH++A+H+  NG     +Q  LGH  L+TT  Y
Sbjct: 217 SVDAVHRSVKRAAKRAGLPEQVSAHWLRHAYASHMQDNGAPAHVVQQQLGHTSLATTTRY 276

Query: 299 TNV 301
           ++ 
Sbjct: 277 SHA 279


>gi|153815634|ref|ZP_01968302.1| hypothetical protein RUMTOR_01870 [Ruminococcus torques ATCC 27756]
 gi|317502423|ref|ZP_07960587.1| phage integrase family Site-specific recombinase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|145847065|gb|EDK23983.1| hypothetical protein RUMTOR_01870 [Ruminococcus torques ATCC 27756]
 gi|316896161|gb|EFV18268.1| phage integrase family Site-specific recombinase [Lachnospiraceae
           bacterium 8_1_57FAA]
          Length = 322

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 122/296 (41%), Gaps = 25/296 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS- 76
            Q +L    IE G S+ T+Q Y          +          Q++R+++  EIR ++S 
Sbjct: 48  LQMFLDAKRIE-GCSERTIQYYRVTVEHLFSKMN---------QSVRRITTEEIRTYLSD 97

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            ++  +  + ++      I SF  +L++     +S +  +  +K    +   + ++    
Sbjct: 98  YQKINRCSNVTIDNIRRNISSFFSWLEEEDYILKSPMKRIHKIKTKTVVKSVITDEGIEK 157

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L DN            + R+ AI+ LLY  G+R+ E ++L  ++I  +     + GKGDK
Sbjct: 158 LRDNC----------AEIRDLAIIDLLYSTGIRVGELVNLNIEDIDLEGRECIVYGKGDK 207

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R V      +  + EY +      + N  L +        L     +  +RQL R L L
Sbjct: 208 ERRVYFDAKAKVHLKEYIEKR---KDNNEALFVTLDAPHDRLKISGVEIRLRQLGRQLKL 264

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                 H  R + AT  +  G  +  +Q ILGH ++ TT  Y  VN  N      +
Sbjct: 265 DR-IHPHKFRRTMATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVNQNNVKTSHQK 319


>gi|257080952|ref|ZP_05575313.1| prophage lambdaba03 [Enterococcus faecalis E1Sol]
 gi|256988982|gb|EEU76284.1| prophage lambdaba03 [Enterococcus faecalis E1Sol]
          Length = 301

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 68/284 (23%), Positives = 137/284 (48%), Gaps = 13/284 (4%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +G SK+T+++Y+   R    F      E        Q+    I+++I   + +++   ++
Sbjct: 17  KGFSKITIKNYKSKLRNTANFFKSINVEP------SQIEKKHIKSWIIDMQEKEMQASTI 70

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
             S+S +K    Y+   K    +  +++  LK+   +   LN+ +   ++    +   H 
Sbjct: 71  NVSVSRLKKLFDYMLIEKYIEYNPFVDIERLKEQRKVIYPLNDYEIKQML---TVAKKHP 127

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
            K I  RN  IL L+  CGLRISE   +  ++IM++Q  +R + K +K R V + P ++K
Sbjct: 128 YKHIAQRNVVILMLMIECGLRISEVCEIRDEDIMNNQIIIR-KSKNNKDRAVAVSPILKK 186

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST--TAHTLR 266
            I++Y+ +      L           GK LN     + ++++++ + +      + HTLR
Sbjct: 187 EIIKYHRIKKRKYGLLEGNTFIVSNLGKKLNEKSIWQIMQEIKKQIDIRDCVRFSGHTLR 246

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN-VNSKNGGDW 309
           H++A+  L NG D+ ++   +GH  +  TQ Y   ++S++  + 
Sbjct: 247 HTYASMQLRNGLDIYTLSLNMGHSSIEMTQRYVQTLSSEDFIEK 290


>gi|229826012|ref|ZP_04452081.1| hypothetical protein GCWU000182_01376 [Abiotrophia defectiva ATCC
           49176]
 gi|229789754|gb|EEP25868.1| hypothetical protein GCWU000182_01376 [Abiotrophia defectiva ATCC
           49176]
          Length = 331

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 121/293 (41%), Gaps = 25/293 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS-KRR 79
           +L   +IE G S+ T++ Y    +  L           T   +R+++  E+R ++S  ++
Sbjct: 60  FLSAKKIE-GCSERTIKFYRTTIKHLLS---------KTKTNVRKITTEEMRKYLSDYQK 109

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                + ++      I SF  +L++     +S +  +  +K    +   ++++    L D
Sbjct: 110 WNNCSNVTIDNVRRNISSFFSWLEEEDYILKSPMKRIHKIKTKTVVKSTISDEGIEKLRD 169

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           N            + R+ AI+ LLY  G+R+ E ++L   +I  +     + GKGDK R 
Sbjct: 170 NCK----------EKRDLAIIDLLYSTGIRVGELVNLNIDDIDFEGRECIVYGKGDKERR 219

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           V      +  + EY D      + N  L +        L     +  +R+L R L +   
Sbjct: 220 VYFDAKAKVHLKEYVDTRS---DTNSALFVTLDAPYDRLKISGVEIRLRELGRSLNIER- 275

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              H  R S AT  +  G  +  +Q ILGH ++ TT  Y  VN  N      +
Sbjct: 276 IHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVNQNNVKTAHQK 328


>gi|299148759|ref|ZP_07041821.1| integrase/recombinase [Bacteroides sp. 3_1_23]
 gi|301311646|ref|ZP_07217572.1| integrase/recombinase [Bacteroides sp. 20_3]
 gi|15072728|emb|CAC47935.1| TpnF protein [Bacteroides thetaiotaomicron]
 gi|298513520|gb|EFI37407.1| integrase/recombinase [Bacteroides sp. 3_1_23]
 gi|300830387|gb|EFK61031.1| integrase/recombinase [Bacteroides sp. 20_3]
          Length = 279

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 76/289 (26%), Positives = 141/289 (48%), Gaps = 32/289 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + + L ++R  +  T++SY+     FL  ++ Y        ++ ++  ++I AFI++
Sbjct: 7   LETFEKRLLMQR-YAGNTIRSYKDYASIFLKHVSKYP-------SLEEIPLSDIEAFINE 58

Query: 78  R-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS-NSLPRALNEKQAL 135
           + +  KI     K  +  IK   + +  +KI      L+    K+S + LP+  ++++  
Sbjct: 59  KVQNGKISVSYQKGLVGAIKKMYELILDKKIQ-----LDYLYPKRSFSKLPKFFSKEEVR 113

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKG 194
            ++DN            + ++ AIL  +Y CGLR+SE L+L  ++I      +RI Q KG
Sbjct: 114 NILDNT----------QNLKHKAILMTIYSCGLRLSELLNLKIKDIKSSDGIIRIHQSKG 163

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +K RIV L   +   +  YY           +  LF G +G   +    Q  +++     
Sbjct: 164 NKDRIVSLPDKLLATLRHYYQ------AFKPKEYLFEGEKGGKYSERSVQLILKKALIKA 217

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            +    + HT RHS+ATHL+ +G D+R ++ +LGH  + TT IYT++  
Sbjct: 218 NVQSEGSVHTGRHSYATHLIQSGIDIRIVKELLGHENIKTTMIYTHITD 266


>gi|331090315|ref|ZP_08339199.1| hypothetical protein HMPREF1025_02782 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330401450|gb|EGG81035.1| hypothetical protein HMPREF1025_02782 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 322

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 122/298 (40%), Gaps = 29/298 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS- 76
            Q +L    IE G S+ T+Q Y          +          Q++R+++  EIR ++S 
Sbjct: 48  LQMFLDAKRIE-GCSERTIQYYRVTVEHLFSKMN---------QSVRRITTEEIRTYLSD 97

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            ++  +  + ++      I SF  +L++     +S +  +  +K    +   + ++    
Sbjct: 98  YQKINRCSNVTIDNIRRNISSFFSWLEEEDYILKSPMKRIHKIKTKTVVKSVITDEGIEK 157

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L DN            + R+ AI+ LLY  G+R+ E ++L  ++I  +     + GKGDK
Sbjct: 158 LRDNC----------AEIRDLAIIDLLYSTGIRVGELVNLNIEDIDLEGRECIVYGKGDK 207

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYL 254
            R V      +  + EY      +   +    LF  +      L     +  +RQL R L
Sbjct: 208 ERRVYFDAKAKVHLKEYI-----EKRKDNSEALFVTLDAPHDRLKISGVEIRLRQLGRQL 262

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            L      H  R + AT  +  G  +  +Q ILGH ++ TT  Y  VN  N      +
Sbjct: 263 KLDR-IHPHKFRRTMATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVNQNNVKTSHQK 319


>gi|116254511|ref|YP_770347.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115259159|emb|CAK10274.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 331

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 64/324 (19%), Positives = 121/324 (37%), Gaps = 23/324 (7%)

Query: 10  VSFELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++  L +  + +  Q L  +R +S  T+ SY    +  L F    T +  +   +  L  
Sbjct: 1   MTNPLPRLIERFFGQRLARQRNVSPHTIASYRDTFKLLLKFAHRRTGKYPSALRLEDLDA 60

Query: 69  TEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
             I AF+    + +     +    L+ I+ F ++L   +      I  +  +       +
Sbjct: 61  ELIVAFLDDLDSGRHASPATYNLRLTAIRGFFRFLAFEEPAYSGQIQRVLAIPG-----K 115

Query: 128 ALNEKQALTLVDNVL---LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
             ++++   L+ N +   L       W+  R+  +L      G+R+SE + L    +   
Sbjct: 116 IGSKREVQFLLRNEIEAILSAPDRRTWVGRRDYVLLLTAVQTGMRLSELVGLDRSAVTIG 175

Query: 185 QS-TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
               +R  GKG K R  P+   +   +  + D    +  +     LF  + G  ++P   
Sbjct: 176 TGAHIRCFGKGRKERTTPITRMLNATLKAWLD----EPPVGNGNALFPTVHGGQMSPDAV 231

Query: 244 QRYIRQLRRYLGL------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           Q  + +                 + H LRHS A  LL  G D   I   LGH    +TQ 
Sbjct: 232 QYLLAKYVLAASKGCLSLRSKRVSPHVLRHSAAMELLDAGVDSTVISLWLGHESTRSTQP 291

Query: 298 YTNVNSKNGGDWMMEI--YDQTHP 319
           Y + +       + +I  +D+  P
Sbjct: 292 YLHAHLAIKEAALAKIDPFDKQSP 315


>gi|323499333|ref|ZP_08104310.1| super-integron integrase IntIA [Vibrio sinaloensis DSM 21326]
 gi|323315721|gb|EGA68755.1| super-integron integrase IntIA [Vibrio sinaloensis DSM 21326]
          Length = 320

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 80/324 (24%), Positives = 136/324 (41%), Gaps = 62/324 (19%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQ 81
           + ++  R  +  T+Q+Y     +F+ +          +Q   +L   E+  F++     +
Sbjct: 11  EYMQS-RRYAPKTIQAYLLWITKFIAYS--------GMQHPSKLKEHEVEQFLTYLAVEE 61

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
           K+  ++   +L+ I    +   +  ++ E   +  +       LP  LN+++    V + 
Sbjct: 62  KVAAKTQALALNAINFLYREYFRTPLSVE---MKFQKSLLDRKLPVVLNKQEMRRFVQH- 117

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV 200
                     ID R    + LLYG GLR+ E + L  Q++      LRI QGKG K R+V
Sbjct: 118 ----------IDPRYKLHIMLLYGSGLRVMECVRLRIQDVDFHYKALRIWQGKGGKNRVV 167

Query: 201 PLLPSVR-----------------------------KAILEYYDLCPFDLNLNIQLPLFR 231
            L   +                               ++   Y     D N +   P  +
Sbjct: 168 TLADELLPLLKQQQSVALAYYNKDIHSPGYEGVHLSNSLQRKYPGAELDFNWHFMFPSHK 227

Query: 232 --------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                   G +   +N    QR +++  +  G+  + T HTLRHSFATHLL +G D+R++
Sbjct: 228 LSIDPESMGWKRHHINETALQRAVKRSAQDAGIDKNVTCHTLRHSFATHLLESGADIRTV 287

Query: 284 QSILGHFRLSTTQIYTNVNSKNGG 307
           Q  LGH  + TTQIYT+V  + GG
Sbjct: 288 QEQLGHSDVKTTQIYTHVIERGGG 311


>gi|86142374|ref|ZP_01060884.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
 gi|85831126|gb|EAQ49583.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
          Length = 405

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 81/292 (27%), Positives = 139/292 (47%), Gaps = 29/292 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + ++  L+ +R LS+ TL+ Y   T QFL        E + ++  R     E+ AF   
Sbjct: 113 LKRYVHYLKGQR-LSEQTLKVYGNFTVQFLNHYKNKPIENLNVRAFRAF-IEEVIAF--- 167

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              ++    S ++ +S +K     L+      +++   ++  KK   LP  L+ K+ + L
Sbjct: 168 ---RRYSISSHRQCISALKHLSILLEF----PKAHFDGLQRPKKDKKLPVVLSRKEVIDL 220

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDK 196
           +              + ++  IL LLY  GLRI E L+L    I  D+  + I+ GKG K
Sbjct: 221 LRAT----------PNLKHRTILALLYSAGLRIGELLALRCDAIDLDRMQVHIKKGKGRK 270

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R V L  +V   +L Y +      +      L  G  G+  + G  + ++++     G+
Sbjct: 271 DRTVKLAQAVVPLLLNYME------SYAPTHYLIPGRDGQGYSAGAIRTFLKKSCTRAGI 324

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
             + T HTLRHS+ATH++ +G  LR IQ +LGH +  TT IYT+V+ ++  +
Sbjct: 325 KKAVTPHTLRHSYATHMMDHGVALRHIQELLGHAKPETTMIYTHVSQQDLFE 376


>gi|153829038|ref|ZP_01981705.1| site-specific recombinase IntI4 [Vibrio cholerae 623-39]
 gi|229526098|ref|ZP_04415502.1| integron integrase IntI4 [Vibrio cholerae bv. albensis VL426]
 gi|148875467|gb|EDL73602.1| site-specific recombinase IntI4 [Vibrio cholerae 623-39]
 gi|229336256|gb|EEO01274.1| integron integrase IntI4 [Vibrio cholerae bv. albensis VL426]
          Length = 320

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 78/321 (24%), Positives = 134/321 (41%), Gaps = 61/321 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           R  +K T+++Y     +++ F        +  +        E+  F++    Q  +  ++
Sbjct: 16  RYYAKKTIEAYLHWITRYIHFHNKKHPSLMGDK--------EVEEFLTYLAVQGKVATKT 67

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
              +L+ +    K + K  ++ E   +  +  +    LP  L   +   L++        
Sbjct: 68  QSLALNSLSFLYKEILKTPLSLE---IRFQRSQLERKLPVVLTRDEIRRLLEI------- 117

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
               +D ++   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V L   +
Sbjct: 118 ----VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKEL 173

Query: 207 R-----------------------------KAILEYYDLCPFDLNLNIQLPLFR------ 231
                                          A+ E Y   P++   +   P F+      
Sbjct: 174 YPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPE 233

Query: 232 --GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
              +R   +N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH
Sbjct: 234 SDVMRRHHMNETVLQKAVRRAAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGH 293

Query: 290 FRLSTTQIYTNVNSKNGGDWM 310
             + TTQIYT+V  +     +
Sbjct: 294 TDVKTTQIYTHVLDRGASGVL 314


>gi|320450285|ref|YP_004202381.1| integrase/recombinase [Thermus scotoductus SA-01]
 gi|320150454|gb|ADW21832.1| integrase/recombinase [Thermus scotoductus SA-01]
          Length = 304

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 82/300 (27%), Positives = 138/300 (46%), Gaps = 26/300 (8%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+    + + L +ERG S   ++ Y  D   +  FL    EE  T           +RA 
Sbjct: 19  LQPLAPYAEYLLLERGYSPRGVRRYLQDLALWFRFLQ---EEGFTP------GPEAVRAL 69

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           + K R      R ++  L+ ++S+ +Y  + +          +   K    LP     ++
Sbjct: 70  LLKER---WAPRRVQGFLAALRSYYRYLSQVKGEAVSDPTEGIGRPKAGRRLPLHPAPEE 126

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRI 190
               ++   L    E + +      +   LYG GLRISEALSL  +N++ + S    +R+
Sbjct: 127 LRRFLEA--LEAEKEARLLSR----LARFLYGTGLRISEALSLKGRNVILEGSVPVAIRV 180

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG+K R+VPL  + R+ +LE   L P   N++I        RG   +    +   R+ 
Sbjct: 181 VGKGNKERLVPLSRTAREVLLE---LGPPQGNVSIFTFTHGRHRGSVPSARYVEARFREA 237

Query: 251 RRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
               GL P   T H LRH++AT L+ NG +L +++ +LGH  ++TTQIY + + +   + 
Sbjct: 238 ALRAGLDPRRFTPHKLRHAYATLLVENGVELDAVKDLLGHESIATTQIYLHASRERLREA 297


>gi|307821936|ref|ZP_07652168.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307823188|ref|ZP_07653418.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307824260|ref|ZP_07654486.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307825345|ref|ZP_07655564.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307733520|gb|EFO04378.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307734640|gb|EFO05491.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307735963|gb|EFO06810.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307736502|gb|EFO07347.1| integrase family protein [Methylobacter tundripaludum SV96]
          Length = 291

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 82/298 (27%), Positives = 128/298 (42%), Gaps = 30/298 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ  + ++ + R LS  T  SY    ++F  FL          ++    S  ++R +   
Sbjct: 12  RQRMIDDMRM-RKLSPKTQASYIRVVKRFAGFLG---------RSPDTASVEDLRRYQLH 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I   SL  +L+G+K   +    R       +  M  +   + LP  L+ ++   L
Sbjct: 62  LVDHGISPISLNATLTGLKFLFETTLDRPEL----LTKMHPVHVPHKLPVVLSREEVARL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
           +  V           + ++   L + YG GLR SE +SL   +I   + TLRI QGKG K
Sbjct: 118 IAAVD----------NLKHQTALSVAYGAGLRASEVVSLKVGDIDSQRMTLRIEQGKGSK 167

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLG 255
            R   L P + + +  ++        +     LF G+    PL+     R I        
Sbjct: 168 DRYAMLSPVLLERLRAWWKFAHAQGKMLQGGWLFPGLDPIDPLSTRQLNRAIHAAAEAAR 227

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +    + HTLRHSFATHLL    D+R IQ +LGH +L TT +Y  V +    D + E+
Sbjct: 228 IDKRVSMHTLRHSFATHLLEQKVDIRVIQVLLGHKKLETTALYAQVAT----DILREV 281


>gi|255505939|ref|ZP_05349026.3| integrase/recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
 gi|255264981|gb|EET58186.1| integrase/recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
          Length = 332

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 119/299 (39%), Gaps = 25/299 (8%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+  Q +L   +IE G S  T+Q Y     + L  +          Q IR++S  EIR +
Sbjct: 55  LEYLQLFLDAKKIE-GCSARTIQYYSSTVERMLRNIE---------QPIRKISTEEIRKY 104

Query: 75  I-SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +   ++       ++      I SF  +L++     +S +  +  +K    +   ++++ 
Sbjct: 105 LVDYQKINNCSKVTVDNIRRNISSFFSWLEEEDYILKSPMKRIHKIKTKQPVKETISDEA 164

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L D+             +R+ A++ LLY  G+R+ E ++L   ++  +     + GK
Sbjct: 165 IELLRDSCE----------CSRDLAMIDLLYSTGIRVGELVNLNISDVDFEARECIVFGK 214

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GDK R V      +  +  Y      D   N  L +        L     +  IR L R 
Sbjct: 215 GDKERKVYFDAKAKLHLQNYLKTRADD---NPALFVSLDEPHDRLKISGVEIRIRSLGRK 271

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           L +      H  R + AT  +  G  +  +Q ILGH ++ TT  Y  VN  N      +
Sbjct: 272 LNMEK-IHPHKFRRTMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVNQTNVKTSHQK 329


>gi|260438382|ref|ZP_05792198.1| site-specific recombinase, phage integrase family [Butyrivibrio
           crossotus DSM 2876]
 gi|292808968|gb|EFF68173.1| site-specific recombinase, phage integrase family [Butyrivibrio
           crossotus DSM 2876]
          Length = 349

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/310 (20%), Positives = 123/310 (39%), Gaps = 23/310 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-----EKITIQTIRQLSYTEIRAF 74
           ++    +     S  T+  Y  D R +  F+A           +T+  + +++  +I+ +
Sbjct: 28  DYFDYCDGTLNRSTATMLEYAYDVRSYFKFIAAGNPLINSYHDVTLDILDKMTPRDIQEY 87

Query: 75  ISKRRTQKIGDRSL--------KRSLSGIKSFLKYLKKRKITTESNILNMRNLK-KSNSL 125
           +S  R+ K     +         R LS ++SF +Y         +    + + K      
Sbjct: 88  MSYLRSHKDESGRIVTNDANARARKLSSLRSFYQYYFAFAGLHSNPAKLISSPKLHQKKQ 147

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWI-----DARNSAILYLLYGCGLRISEALSLTPQN 180
           PR  +E+    L D + +    + K       + R++AI+ LL G G+R+SE + +   +
Sbjct: 148 PRLDSEEIKELLTDVITVGALDDNKRPYAIRSNLRDTAIIALLGGTGIRVSELVGIDLND 207

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPL 238
           I  + ++++I  KG    IV     + K + +Y D          +  LF   R   K L
Sbjct: 208 IDWEHNSIKIVRKGGNEDIVYFGEEISKYMADYIDN-ERKPGDKKENALFVASRGEKKRL 266

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-I 297
                +R + +           + H LR +F T+      DL ++   LGH  +  T+  
Sbjct: 267 TVRSVERIVSKYSAASIPSKKISPHGLRRTFGTNYYEATSDLYAVADALGHKNIQVTKDH 326

Query: 298 YTNVNSKNGG 307
           Y +++ +   
Sbjct: 327 YADISDRKKQ 336


>gi|260774302|ref|ZP_05883217.1| integron integrase IntI4 [Vibrio metschnikovii CIP 69.14]
 gi|260611263|gb|EEX36467.1| integron integrase IntI4 [Vibrio metschnikovii CIP 69.14]
          Length = 320

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 75/327 (22%), Positives = 134/327 (40%), Gaps = 62/327 (18%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQ 81
           + +++ R  +  T++SY     Q+++F        +           ++  F++     +
Sbjct: 11  EYMQV-RYYANKTIESYIHWITQYVVFHNKTHPNLLG--------SRDVEQFLTYLAVEK 61

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
           K+  ++   +L+ +    + + K  +T E   +  +  +    LP  +  ++     ++ 
Sbjct: 62  KVATKTQSLALNALSFLYREIIKEPLTLE---MKFQKSQLERKLPIVMTREEIKRFFNH- 117

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV 200
                     +D +    + LLYG GLR+ E + L  Q+I  D   LRI QGKG K R V
Sbjct: 118 ----------VDPKYQLHIKLLYGSGLRLMECVRLRVQDIDFDYGALRIWQGKGGKNRTV 167

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQL--------------------------PLFRGI- 233
            L   +   I E   L     + +++                            LF    
Sbjct: 168 TLAKELHPLIKEQISLAKRYYDKDMETKGYGGVWLPNALNSKYPTAPFEFHWHYLFPSNA 227

Query: 234 ----------RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                     R   +N    QR +++  +   +  S + HTLRHSFATHLL +G D+R++
Sbjct: 228 LSVDQESNLLRRHHINETSLQRTVKRAVKEAEIKKSVSCHTLRHSFATHLLESGADIRTV 287

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWM 310
           Q  LGH  +STTQIYT+V  +     +
Sbjct: 288 QEQLGHADVSTTQIYTHVLDRGANGVL 314


>gi|294776403|ref|ZP_06741881.1| phage integrase, N-terminal SAM domain protein [Bacteroides
           vulgatus PC510]
 gi|294449729|gb|EFG18251.1| phage integrase, N-terminal SAM domain protein [Bacteroides
           vulgatus PC510]
          Length = 341

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 76/330 (23%), Positives = 132/330 (40%), Gaps = 21/330 (6%)

Query: 9   IVSFELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           +   +  K   ++    L IE G+S+ T+ +Y       + FL           T+  ++
Sbjct: 1   MKPTDFSKYLTDFFGTYLPIECGVSQNTILTYSYTFSLLIEFLKEQEFINPQRVTLADIT 60

Query: 68  YTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKR---KITTESNILNMRNLKKSN 123
              I  F+      +     +    L+ I+SF  YL+ R    +     I+++R  K + 
Sbjct: 61  KERIINFLQWLEEDRHCSVSTRNARLAAIRSFYSYLQYRDVKGMFRYHEIMSIRKKKTAA 120

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
                L       +     L           R+  +L LLY  G R+ E + LTP NI  
Sbjct: 121 PEMAYLTIDGIKLI-----LSQPDLKTRYGRRDFVLLSLLYDSGARVQELIDLTPPNIEF 175

Query: 184 -DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
            D +T+++ GKG+K RIVPL       + +Y             +P+F    G+ L+   
Sbjct: 176 NDTATVKLCGKGNKARIVPLSKQQASNLKKYMYDEGLMKEDRHCVPIFCNFHGEKLSRVA 235

Query: 243 FQRYIRQLRRYLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
               +++            +P +   H+ RHS A HLL    +L  I+  LGH   +TT+
Sbjct: 236 VLNIVKKYAEIARKKSPDLIPENLGCHSFRHSKAMHLLEADINLVYIRDFLGHVSTTTTE 295

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
           IY   + K   + +  +    +P I ++ K
Sbjct: 296 IYARASEKKKLEALSRV----NPGIIKEGK 321


>gi|153831894|ref|ZP_01984561.1| IntI [Vibrio harveyi HY01]
 gi|148871892|gb|EDL70715.1| IntI [Vibrio harveyi HY01]
          Length = 320

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 84/323 (26%), Positives = 131/323 (40%), Gaps = 65/323 (20%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           R  +K T+++Y    +++++F          +    +L   ++  F+S     +K+  ++
Sbjct: 16  RHYAKKTIETYLFWIKRYIVFHQ--------LAHPSKLCEDDVERFLSHLAIDEKVAVKT 67

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALTLVDNVLLHT 145
              +L+ I    +     +       LNMR  K      LP  L   +    V +     
Sbjct: 68  QALALNAISFLYR-----EYFQMPLSLNMRFQKSLTEKKLPVVLTRNEVRRFVQH----- 117

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLP 204
                 ID +    + LLYG GLRI E L L  Q+I  D   LR+ QGKG K R V L  
Sbjct: 118 ------IDPKYKLHIQLLYGSGLRIMECLRLRIQDIDYDYGALRVWQGKGGKNRTVTLAK 171

Query: 205 SVRK-----------------------------AILEYYDLCPFDLNLNIQLPLFR---- 231
            + +                              +   Y     D N +   P  +    
Sbjct: 172 ELHEPLKAQVNLTRDYYQKDRHMGGYAGVYISDGLRRKYPGAELDFNWHFLFPSTKLSID 231

Query: 232 ----GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                 R   +N    QR +++  +  G+  S T HTLRHSFATHLL +G D+R++Q  L
Sbjct: 232 ADTGEFRRHHVNESAIQRAVKRAAKDAGIEKSVTCHTLRHSFATHLLESGADIRTVQEQL 291

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH  + TTQIYT+V  +  G  +
Sbjct: 292 GHTDVKTTQIYTHVIERGAGGVL 314


>gi|88803782|ref|ZP_01119305.1| tyrosine type site-specific recombinase [Polaribacter irgensii
           23-P]
 gi|88780310|gb|EAR11492.1| tyrosine type site-specific recombinase [Polaribacter irgensii
           23-P]
          Length = 374

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 79/300 (26%), Positives = 131/300 (43%), Gaps = 34/300 (11%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
            +PE+   ++ K  + WL     ++ LSK T+ +Y   T  ++ +      +  +++T+ 
Sbjct: 94  EIPELYMTDVRK-FKKWL----FQKRLSKNTVHTYVTVTATYIRYALLKKADLFSMKTVA 148

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
             +Y  I  F+              + + GI+ F  Y   +    E   + +   +K   
Sbjct: 149 AFNYDSI--FV-----PNKSISYQNQFIGGIQKFFAY---KGYAYEE--IPIERPRKEKK 196

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L+  +   +           +   + ++ A+L LLY  GLRI EA++L   +I   
Sbjct: 197 LPIILSGAEIKAIF----------STITNLKHKALLSLLYSAGLRIGEAITLEVTDIDCQ 246

Query: 185 QSTLR-IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           +  +   Q KG K R   L P   K + +YY      +    +  LF G  G   +    
Sbjct: 247 RMLIYGRQAKGKKDRYTLLSPVFLKILRDYY------VAYRPKNSLFEGANGSTYSDASA 300

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           Q+ ++      G+    T H+LRHSFATHLL  G D+R IQ +LGH    TT IYT+V  
Sbjct: 301 QKVLKNALFKAGIRKKATLHSLRHSFATHLLEKGTDIRYIQELLGHSSPKTTMIYTHVTQ 360


>gi|169826673|ref|YP_001696831.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41]
 gi|168991161|gb|ACA38701.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41]
          Length = 275

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 124/294 (42%), Gaps = 23/294 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L++E   +  T+  Y+    +FL               ++ ++   +R +I+   
Sbjct: 3   EYLLCLKLE-NKAVATITKYKWILERFLRECKV---------PLKDMTSENVREWINDFS 52

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
             K    ++    + + +F ++    +      I      +   SLP  L+E +   +  
Sbjct: 53  IDK-KPNTIALVHATLSTFFQFCFDEEYIERVIIKKRWRPQLPKSLPNYLDEYEFSRI-- 109

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                    ++ +  R+ AI+  L   G R+SE  +L  ++I  D+ T  + GKG+KIR 
Sbjct: 110 ------KLISEQLSIRDRAIILFLLTSGCRVSEMSALNIKDINMDKHTAEVVGKGNKIRT 163

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +        A+  Y      D     + PLF    G  L  G  +  ++++ +  GL   
Sbjct: 164 IHFSLECAIALQNYLQARTCD----PKEPLFMNKFGDRLLNGGIRGVLKKVGKQAGLEKI 219

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              H  RH+FAT+LL+ G DL+ I   +GH  L+TT+IY  + S++       I
Sbjct: 220 FHPHCCRHTFATNLLARGADLQFIADEMGHADLNTTRIYAQIPSEDKRLKYQNI 273


>gi|169823615|ref|YP_001691118.1| putative integrase [Finegoldia magna ATCC 29328]
 gi|167832235|dbj|BAG09150.1| putative integrase [Finegoldia magna ATCC 29328]
          Length = 359

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 86/317 (27%), Positives = 149/317 (47%), Gaps = 31/317 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDT-----RQFLIFLAF---------YTEEKITIQT--I 63
           N++++L +   LSK T+  Y         + FL F            Y E  ++I     
Sbjct: 32  NYVKDLYVMYNLSKHTIIDYFSLITIFTKKMFLTFYEKPYYDIITGKYDEHYLSIDEKFY 91

Query: 64  RQLSYTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
            Q+    +  F+++ +  + + + S+   +  +KSF  Y  +     ++N+ N+R  K  
Sbjct: 92  EQVEKRHVNDFLAELKLERNLKESSVITKIRQLKSFYSY-LEEHYDIKNNVKNIRIPKAE 150

Query: 123 NSLPRALNEKQALTLVD----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            +LP  L  ++A++LV+    ++  H   +TKWI  RN  ++ +L  C LR SE  S+  
Sbjct: 151 KNLPVYLTLEEAVSLVNVVDKDIEQHKGTKTKWICVRNKCMIVMLLNCALRRSELRSINI 210

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           ++I +D   + + GKG K R + L    +++I +Y  + P D   N    LF        
Sbjct: 211 EDIKED--YIIVMGKGAKERTIYLNDLTKQSINDYLRVRPKDAKDNK--ALFITKNKHTY 266

Query: 239 NPGVFQRY---IRQLRRYLGLPLST-TAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLS 293
           +    +R    +++  R   L     + H LRH+ AT +  +G  DLRS+Q ILGH    
Sbjct: 267 SRISCERIGDVVKKYLREANLNDQLFSTHKLRHTSATLMYQHGNVDLRSLQQILGHASSK 326

Query: 294 TTQIYTNVNSKNGGDWM 310
           TT+IYT+V  KN    +
Sbjct: 327 TTEIYTHVYDKNLKRAV 343


>gi|291559720|emb|CBL38520.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2]
          Length = 363

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 58/306 (18%), Positives = 120/306 (39%), Gaps = 26/306 (8%)

Query: 34  LTLQSYECDTRQFLIFL-------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ----- 81
            T  +Y  D R F  FL         Y+     +  + ++   ++  ++   +       
Sbjct: 43  RTRIAYAYDLRVFFHFLIDENPAYRNYSVLDFKVSDLDKIESVDLEEYMEYLKVYISEEQ 102

Query: 82  ----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
               +  ++ + R +S ++SF  Y  KR++  ++  L +   K        L   +  +L
Sbjct: 103 HKHMQNTEQGVFRKMSALRSFYGYFYKRQLIEKNPTLLVDMPKIREKEIIRLEADEVASL 162

Query: 138 VDNVLLHTSHET-------KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           +D V     H T       +    R+ AI+ LL G G+R+SE + L   ++    + L +
Sbjct: 163 LDFVEHGGDHLTGQKLAYYEKTKERDLAIITLLLGTGIRVSELVGLNVDDVDFRNNGLHL 222

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIR 248
             KG K   V     V  A+ +Y +     +      +  LF  ++ + +     Q  ++
Sbjct: 223 IRKGRKEMTVYFGNEVADALEQYIEGSRKLIIPKEGHEDALFYSMQRRRIGVQAVQNLVK 282

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGG 307
           +  + +      T H LR ++ T L     D+  +  +LGH  ++TT+  Y  ++     
Sbjct: 283 KYAKEVTPLKKITPHKLRSTYGTALYQETDDIYLVAEVLGHSDVNTTRKHYAAMSDTRRR 342

Query: 308 DWMMEI 313
               ++
Sbjct: 343 QAAGKV 348


>gi|227872383|ref|ZP_03990731.1| possible tyrosine recombinase [Oribacterium sinus F0268]
 gi|227841772|gb|EEJ52054.1| possible tyrosine recombinase [Oribacterium sinus F0268]
          Length = 358

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 63/305 (20%), Positives = 120/305 (39%), Gaps = 29/305 (9%)

Query: 32  SKLTLQSYECDTRQFLIFL--------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           S  T  +Y  D + F  FL          Y  E   +  +  +   E   F+  R  +K 
Sbjct: 40  SSRTKIAYAYDLKVFFQFLLEEKKLRSDIYDFEARDLDRLSLVDLEEYMEFLKYRTKKKT 99

Query: 84  G-------------DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           G             ++S+KR +S +KSF  YL K +   E+    +   K S      ++
Sbjct: 100 GKEGQIEEVEVLNHNKSIKRKISSLKSFFGYLYKTEQIKENKTALLSLPKLSQEEIVRMD 159

Query: 131 EKQALTLVDNVLLHTSHETKWIDAR------NSAILYLLYGCGLRISEALSLTPQNIMDD 184
           + +    +D V        K           + A++ L+ G G+R+SE + L   ++   
Sbjct: 160 QGEVAQFLDQVESGEDLSKKEKLYHEKNQVRDLAMMQLMLGTGIRVSECVGLNCSDVDFQ 219

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVF 243
            + +RI  KG K   +     V + +  Y +     +     +  LF  ++ K ++    
Sbjct: 220 NNAIRIHRKGGKEVSIYFSDEVEQGLRAYMEERKSKIPAAGHENALFLSLQNKRMSVRTV 279

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN 302
           +  +++  + +      T H LR S+ T+L    GD+  +  +LGH  ++TT + Y  + 
Sbjct: 280 ELMVKKYAQKVTPLKHITPHKLRSSYGTNLYQETGDIYLVADVLGHSDVNTTKKHYAALE 339

Query: 303 SKNGG 307
            +   
Sbjct: 340 EERRR 344


>gi|227818829|ref|YP_002822800.1| transposase number 1 for insertion sequence NGRIS-16a
           [Sinorhizobium fredii NGR234]
 gi|227819104|ref|YP_002823075.1| transposase number 1 for insertion sequence NGRIS-16b
           [Sinorhizobium fredii NGR234]
 gi|227819152|ref|YP_002823123.1| transposase number 1 for insertion sequence NGRIS-16c
           [Sinorhizobium fredii NGR234]
 gi|227819580|ref|YP_002823551.1| transposase number 1 for insertion sequence NGRIS-16d
           [Sinorhizobium fredii NGR234]
 gi|227819591|ref|YP_002823562.1| transposase number 1 for insertion sequence NGRIS-16e
           [Sinorhizobium fredii NGR234]
 gi|227820371|ref|YP_002824342.1| transposase number 1 for insertion sequence NGRIS-16f
           [Sinorhizobium fredii NGR234]
 gi|227822209|ref|YP_002826180.1| putative transposase number 1 for insertion sequence NGRIS-16h
           [Sinorhizobium fredii NGR234]
 gi|227823694|ref|YP_002827667.1| putative transposase number 1 for insertion sequence NGRIS-16
           [Sinorhizobium fredii NGR234]
 gi|36959087|gb|AAQ87512.1| Putative integrase/recombinase Y4QK [Sinorhizobium fredii NGR234]
 gi|227337828|gb|ACP22047.1| putative transposase number 1 for insertion sequence NGRIS-16a
           [Sinorhizobium fredii NGR234]
 gi|227338103|gb|ACP22322.1| putative transposase number 1 for insertion sequence NGRIS-16b
           [Sinorhizobium fredii NGR234]
 gi|227338151|gb|ACP22370.1| putative transposase number 1 for insertion sequence NGRIS-16c
           [Sinorhizobium fredii NGR234]
 gi|227338579|gb|ACP22798.1| putative transposase number 1 for insertion sequence NGRIS-16d
           [Sinorhizobium fredii NGR234]
 gi|227338590|gb|ACP22809.1| putative transposase number 1 for insertion sequence NGRIS-16e
           [Sinorhizobium fredii NGR234]
 gi|227339370|gb|ACP23589.1| putative transposase number 1 for insertion sequence NGRIS-16f
           [Sinorhizobium fredii NGR234]
 gi|227341209|gb|ACP25427.1| putative transposase number 1 for insertion sequence NGRIS-16h
           [Sinorhizobium fredii NGR234]
 gi|227342696|gb|ACP26914.1| putative transposase number 1 for insertion sequence NGRIS-16
           [Sinorhizobium fredii NGR234]
          Length = 286

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 80/293 (27%), Positives = 128/293 (43%), Gaps = 32/293 (10%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E+   R+  ++++ I R LS  T +SY     +F  +           ++  +L   ++R
Sbjct: 3   EMSPLRRRMIEDMTI-RNLSPATQRSYLHAVTKFSRYFG---------RSPDRLGLEDVR 52

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           AF     +  +   +L +++  ++ F           E     +   +    LP  LN  
Sbjct: 53  AFQVHLVSSGLSWPALNQTVCALRFFFGVTLGHAEIPE----RIAYARTPAKLPTILNGD 108

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-Q 191
           + +  ++ V             +    L   Y  GLR +E +SL   NI  ++  +RI  
Sbjct: 109 EIVRFLEAV----------PSLKTRTALTTAYAAGLRATETVSLKVSNIDGERGVIRIEH 158

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQL 250
           GKG K R V L   +   +  Y+ L      +  Q+ LF G    KP++  V     R  
Sbjct: 159 GKGGKDRNVMLSAQLLHILRVYWKL------VRPQVWLFPGRDESKPIDVQVLHSACRSA 212

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           R   G+    + HTLRHSFATHLL +G D+R IQ +LGH  LSTT  YT V++
Sbjct: 213 RAAAGIDKRISVHTLRHSFATHLLESGTDIRIIQVLLGHNNLSTTARYTKVSN 265


>gi|218295372|ref|ZP_03496185.1| integrase family protein [Thermus aquaticus Y51MC23]
 gi|218244004|gb|EED10530.1| integrase family protein [Thermus aquaticus Y51MC23]
          Length = 313

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 79/300 (26%), Positives = 137/300 (45%), Gaps = 26/300 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + + L +ERG S   ++ Y  D   +  FL          + +R +              
Sbjct: 34  YAEYLLLERGYSPRGVRRYLQDLALWFRFLEARAL-PPGPEAVRAI-----------LLE 81

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           ++   R ++  L+ ++S+ +YL + R          +   K    LP     ++ L  ++
Sbjct: 82  ERWAPRRVQGFLAALRSYYRYLAQVRGEAVADPTEGIGRPKAGRRLPLHPAPEELLRFLE 141

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKGDK 196
              L    E + +    +A+   LYG GLRISEALSL  +NI+ +      +R+ GKG+K
Sbjct: 142 A--LAQEKEARLL----TALARFLYGTGLRISEALSLKGKNIVQEGGRPVAVRVVGKGNK 195

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+VPL  + + A+LE   L P   N+N+        RG+  +    +   R+     GL
Sbjct: 196 ERLVPLSRTAQSALLE---LGPPQGNVNVFTFAQGRYRGRVPSARYVEAKFREAALRAGL 252

Query: 257 -PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            P   T H LRH++AT L+  G  L +++ +LGH  ++TTQIY + + +   +    + D
Sbjct: 253 DPRRFTPHKLRHAYATFLVERGVQLDAVKDLLGHESIATTQIYLHASRERLKEAASRLPD 312


>gi|54027830|ref|YP_122070.1| putative recombinase [Nocardia farcinica IFM 10152]
 gi|54019338|dbj|BAD60706.1| putative recombinase [Nocardia farcinica IFM 10152]
          Length = 311

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 113/297 (38%), Gaps = 24/297 (8%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L    + +L +L      +  TL++Y  D   F   +            I  ++   +R 
Sbjct: 16  LAVHIEQFLTDLANANRPA-NTLRAYRGDLTGFAEHVDG---------GIDGVTVAAVRG 65

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+S      +   + KR  + + +F ++  +  +   + +  +  +    +LPR      
Sbjct: 66  FLSGIAD--LAPATRKRKRAAVAAFCRWAVRHDLLAANPMDKVDTITVPKTLPRPAPAAD 123

Query: 134 ALTLVDNVLLHTSHETKWID-ARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRI 190
              +   +      +   +D  R+  +    Y CG R SE   L  ++     D   +R+
Sbjct: 124 IAKVFAAICARRPRKDVALDVLRDRVLFETAYVCGARASEVCELYVEDFDLRLDDEHVRL 183

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR---GIRGKPLNPGVFQRYI 247
            GKG  +R V L      A+L  Y     D       P+FR     RG PL+        
Sbjct: 184 HGKGGTVRTVLLDDRGYVAMLRLY----LDRTGYTAGPMFRASINGRGGPLSYSAAHHRW 239

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            +     G+ +    H LRHS AT L++ G  +  ++  LGH    TTQIY  +  +
Sbjct: 240 SRYCAAAGVDIDI--HQLRHSHATELINAGVSIEVVRKRLGHASTETTQIYALLADQ 294


>gi|163855761|ref|YP_001630059.1| putative integrase/recombinase [Bordetella petrii DSM 12804]
 gi|163259489|emb|CAP41789.1| putative integrase/recombinase [Bordetella petrii]
          Length = 317

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 121/290 (41%), Gaps = 16/290 (5%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSG 94
           + SY       L F+      KI    I  L + +I+AF+    + +     +  + LS 
Sbjct: 1   MASYRDTFSILLRFMEHQAGVKIERICIADLHHKQIQAFLLWLEQDRGNSVNTRNQRLSA 60

Query: 95  IKSFLKY---LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           I SF ++   +    I     ILN++  K+ +S    L+ +    L     L   +  K 
Sbjct: 61  ITSFFRFVMSIYPEHILLCQQILNIQFKKRQSSTVDYLSIEAVELL-----LQQPNARKP 115

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQGKGDKIRIVPLLPSVRKAI 210
           +  R+  +L +LY  G R+ E  ++   ++     +T R+ GKG K+R+VPLL      +
Sbjct: 116 MGRRDLVLLSVLYDTGARVQELANMNVSDLKLTAPATARLLGKGAKVRLVPLLAPTTALL 175

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTAHT 264
           + Y              PLF     K L        +++  R +       L    + HT
Sbjct: 176 VSYLQEHHGQYLEQKDRPLFCNNVRKRLTRAGISYILQKYAREVSQGNPGLLGTKISPHT 235

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           LRHS A HLL  G +L  I+ +LGH  + TT+IY   +  +    +   Y
Sbjct: 236 LRHSKAMHLLQAGVNLIYIRDLLGHSDIKTTEIYARADLDSKKAALEMAY 285


>gi|317124016|ref|YP_004098128.1| integrase [Intrasporangium calvum DSM 43043]
 gi|315588104|gb|ADU47401.1| integrase family protein [Intrasporangium calvum DSM 43043]
          Length = 329

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 66/301 (21%), Positives = 106/301 (35%), Gaps = 21/301 (6%)

Query: 14  LLKERQNWLQ-NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           L    Q++   +    +GLS  T+ +Y    R  + +L   T        +  +    I 
Sbjct: 4   LAPSLQSYFTGHAYARKGLSPNTIAAYRDTWRLLIKYLTASTGVHADKIDLGMIDAEAIT 63

Query: 73  AFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR---A 128
            F+      +     +    L+ I++ L             I  +  +      PR    
Sbjct: 64  TFLDHLEADRGNSASTRNARLTAIRAVLAVTLPDHPEHAGTIARVLAVPTRRGTPRTVQF 123

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-T 187
           L+ ++   L+D           W   R+ A+L L    GLR+SE  +LT  +I       
Sbjct: 124 LSVEETQALLD-----APDPNTWTGRRDRALLTLAIQTGLRVSELTALTTNDIHTGTGAH 178

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           +   GKG K R  PL       +  Y                F G RG+ L+    +R +
Sbjct: 179 VTCTGKGRKYRATPLTSITLTVLTPYLAER----AARPGAAAFPGPRGQHLSRDALERRL 234

Query: 248 RQLRRYLGLP------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            +                 T HTLRH+ A  LL  G D+  I   LGH   S+T +Y + 
Sbjct: 235 AKHVSTATEHCPSLGGKHVTMHTLRHTAAMRLLQAGVDVAVIALWLGHENTSSTDVYLHA 294

Query: 302 N 302
           +
Sbjct: 295 D 295


>gi|325963595|ref|YP_004241501.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469682|gb|ADX73367.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 371

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 75/358 (20%), Positives = 130/358 (36%), Gaps = 67/358 (18%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL----AFYTEEKITIQTIRQLSYTEIRA 73
              +L +L ++R  S  T+++Y  D   F  +L    +           +  +    +  
Sbjct: 29  VDEYLAHL-VDRNYSPKTVRAYGYDLLSFCRWLVEEESATGLRDDAGSPLDAIDTDVLLR 87

Query: 74  FI-------------------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
           ++                   S RR  +    ++ R L+ I S   +L  R     S + 
Sbjct: 88  YLRACRDATVPGRPGPNVVAMSGRRVDRYAPSTINRRLAAISSLFGFLTLRDPDLRSPVP 147

Query: 115 NMR---------------------------NLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             +                            L++   LP AL++ +A  L+         
Sbjct: 148 KGKEARWVVAGERSGLLAHTRRRPAKRSSLRLREPRRLPVALSQGEAAKLL--------- 198

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
              +   R+ +I  L+  CGLR +E L L   ++      LR+ GK  + R VPL   + 
Sbjct: 199 -GSFKSWRDQSIAGLMLYCGLRSAEVLGLDVTDVDIGGGWLRVMGKDQRERRVPLDVDLG 257

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
             I  Y      + +      + +G  RG+PL P   +   R  R   G+      HTLR
Sbjct: 258 SVIQVYLLTERPESDSPRLFLVAKGAHRGQPLTPAGLRTIFRYHRALTGVAAG-HPHTLR 316

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           H+F T L   G DL  +Q++LGH  + TT  Y ++   +    +   +D     I  +
Sbjct: 317 HTFGTALAEAGVDLAVMQALLGHAHVDTTARYIHLAPAH----VKAEFDAARARIRDR 370


>gi|309791377|ref|ZP_07685887.1| integron integrase [Oscillochloris trichoides DG6]
 gi|308226584|gb|EFO80302.1| integron integrase [Oscillochloris trichoides DG6]
          Length = 321

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 68/324 (20%), Positives = 127/324 (39%), Gaps = 60/324 (18%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L++L   R  S  T ++Y    R++++F              R+L    + AF++   T+
Sbjct: 12  LRDLLRSRHYSLRTEETYLDWVRRYVLFHQKRHP--------RELGADAVVAFLNHLATE 63

Query: 82  -KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +   +  ++ + +    + L  R +     +  +   K+   LP  L   +   ++ +
Sbjct: 64  LNVAASTQNQARAALLFLYRELLGRDLGD---LAAITAAKQPRRLPTVLTRAEVRAVMAH 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRI 199
                      +      +  LLYG GLR+ E L L  +++      + ++ GKG + R+
Sbjct: 121 -----------LSGVYLLMAQLLYGSGLRLMECLRLRVKDLDFQMLQVVVRDGKGMRDRL 169

Query: 200 VPLLPSVRKAILE------------------------------------YYDLCPFDLNL 223
             L  ++ + +                                      +     F    
Sbjct: 170 TMLPATLVEPLRAHLVQVKQIFEQDLADGYGEVYLPFALVRKSPDAARSWAWQYLFPAEQ 229

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             + P    IR   ++ G  QR +    R  G+    + HT RHSFATHL+ NG D+R++
Sbjct: 230 RSRDPRSGAIRRHHVHEGSLQRAVHDAVRASGITKHASCHTFRHSFATHLIENGYDIRTV 289

Query: 284 QSILGHFRLSTTQIYTNVNSKNGG 307
           Q +LGH  + TT IYT+V ++ G 
Sbjct: 290 QELLGHSDVKTTMIYTHVLNRGGR 313


>gi|18310077|ref|NP_562011.1| integrase/recombinase [Clostridium perfringens str. 13]
 gi|18144756|dbj|BAB80801.1| probable integrase/recombinase [Clostridium perfringens str. 13]
          Length = 338

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 71/343 (20%), Positives = 144/343 (41%), Gaps = 46/343 (13%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ELL   ++++ + +  R L + T+++YE   R    FL    E+   +  +  +    IR
Sbjct: 11  ELLDILEDYMTDCKY-RDLRRTTIRAYEQSLRLLFKFL----EDDYKVIYVEDVKEEHIR 65

Query: 73  AFISKRRTQK-------------------------IGDRSLKRSLSGIKSFLKYLKKRKI 107
            +I   + +                          +   +L   L  IK F  + K  K+
Sbjct: 66  NYIDFTKERGKYSYVANENNINSNVPQNRGDFGKKVSLCTLDNYLGNIKMFFTWCKDNKL 125

Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
            ++     ++ +K S      +   +   L+ ++ L     T + + R+  ++ LL   G
Sbjct: 126 ISKDPSFKIKRIKYSRKAKAEITIDEFNKLLKSLDL-----TLFSEYRDYIVIQLLMDTG 180

Query: 168 LRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
           +R+ E L L  ++I     T+ I G   KG + R V    ++++ + ++ +     +  N
Sbjct: 181 MRVGECLELREEDIDIRNKTIFISGEIAKGRRDRYVFFSNTMQRMLQKWLNYKDRYVESN 240

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
               +F   RG       F++++R   +   +    T HTLR++FA   L +GGD+ ++ 
Sbjct: 241 ---YIFVTNRGGKYQVHSFEKHMRNYLKKAKIDKQITPHTLRNNFAKRFLMSGGDIYTLS 297

Query: 285 SILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
            +LGH  + TTQ  Y ++ + +    + + Y +  P    K K
Sbjct: 298 RLLGHSDIRTTQSAYLDLTTSD----IRKNYLKFSPLENMKKK 336


>gi|28898639|ref|NP_798244.1| site-specific recombinase IntIA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|28806857|dbj|BAC60128.1| site-specific recombinase IntIA [Vibrio parahaemolyticus RIMD
           2210633]
          Length = 320

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 81/321 (25%), Positives = 129/321 (40%), Gaps = 61/321 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           R  +  T++SY    ++F++F  F    K        LS  ++  F+S     +K+  ++
Sbjct: 16  RYYANKTIESYLFWIKRFIVFHQFAHPSK--------LSEDDVIRFLSHLAIDEKVAVKT 67

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
              +L+ I    +   K  ++ +   +  +       LP  L   +    V +       
Sbjct: 68  QALALNAISFLYRDFFKTPLSLD---MRFQKSLTEKKLPVVLTRDEVRRFVQH------- 117

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
               ID R    + LLYG GLRI E L L  Q+I  D   +R+ QGKG K R V L   +
Sbjct: 118 ----IDPRYKLHIQLLYGSGLRIMECLRLRIQDIDYDYGAVRVWQGKGGKNRTVTLAKEL 173

Query: 207 RKAILEYYDLCPFDLNLNIQLP--------------------------LFRGI------- 233
            + +    +        +  +P                          LF          
Sbjct: 174 HEPLKSQMNFARNYYFKDRHVPGYAGVYISEGLRRKYPNAELDFNWHFLFPSNKLSVDKE 233

Query: 234 ----RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
               R   +N    QR +++      +  + T HTLRHSFATHLL +G D+R++Q  LGH
Sbjct: 234 TGQLRRHHINESAIQRAVKRSALDANIEKTVTCHTLRHSFATHLLESGADIRTVQEQLGH 293

Query: 290 FRLSTTQIYTNVNSKNGGDWM 310
             + TTQIYT+V  +  G  +
Sbjct: 294 TDVKTTQIYTHVIERGAGGVL 314


>gi|257485772|ref|ZP_05639813.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|302130294|ref|ZP_07256284.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|331012868|gb|EGH92924.1| Phage integrase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 320

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 63/276 (22%), Positives = 121/276 (43%), Gaps = 21/276 (7%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T ++Y+ D   F  F+   + ++      R ++ + + A+ ++   + +   +++R L
Sbjct: 39  PRTRRAYQNDLEDFCGFVGLASADE-----FRVVTRSHVLAWRAQLEHRGLAGATIRRKL 93

Query: 93  SGIKSFLKYLKKRKITTE-SNILNMRNLKKSNSLPRALNEKQALTLVDNV---LLHTSHE 148
           + + S   +L +       + +  ++  K  +      NE +   L D+    LL    E
Sbjct: 94  AALASLFDHLLESNAIAGGNPVHGVKRPKIES------NEGKTPALGDHQAKALLEAPDE 147

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSV 206
           T     R+ A++ +L   GLR  EA  L   +I D +    L++ GKG K+R +PL P  
Sbjct: 148 TTLKGLRDRALMAVLLYHGLRREEAALLQVGDIQDRRGIQHLKVHGKGGKVRYLPLHPVA 207

Query: 207 RKAILEYYD---LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTA 262
              I +Y +       D  + + +PL   + G  +        +    +  G+       
Sbjct: 208 AGRIHQYLESSGHHWADRKVPLFIPLRGKLTGAGITANGIYMVVAAYAKKAGIQVDGLGV 267

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           H LR + AT+ L +  D+  +Q+ LGH  +STT+IY
Sbjct: 268 HGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303


>gi|213972135|ref|ZP_03400225.1| SAM-like protein [Pseudomonas syringae pv. tomato T1]
 gi|302062047|ref|ZP_07253588.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Pseudomonas syringae pv. tomato K40]
 gi|302131887|ref|ZP_07257877.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213923112|gb|EEB56717.1| SAM-like protein [Pseudomonas syringae pv. tomato T1]
          Length = 320

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 66/277 (23%), Positives = 124/277 (44%), Gaps = 23/277 (8%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T ++Y+ D   F  F+   + ++      R ++ + + A+ ++   + +   +++R L
Sbjct: 39  PRTRRAYQNDLEDFCGFVGLASADE-----FRVVTRSHVLAWRAQLEHRGLAGATIRRKL 93

Query: 93  SGIKSFLKYLKKRKITTE-SNILNMRNLKKSNSLPRALNEKQALTLVDNV---LLHTSHE 148
           + + S   +L +       + +  ++  K  +      NE +   L D+    LL    E
Sbjct: 94  AALASLFDHLLESNAIAGGNPVHGVKRPKIES------NEGKTPALGDHQAKALLEAPDE 147

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSV 206
           T     R+ A+L +L   GLR  EA  L   +I D +    L++ GKG K+R +P+ P  
Sbjct: 148 TTLKGQRDRALLAVLLYHGLRREEAALLQVSDIQDRRGIQHLKVHGKGGKVRYLPMHPVA 207

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLP-LSTT 261
              I +Y +     L  + ++PLF  +RGK     +        +    +  G+      
Sbjct: 208 AGRIHQYLESSGHHL-ADRKVPLFIPLRGKLTGAGITANGIYTVVAAYAKKAGIEVDGLG 266

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            H LR + AT+ L +  D+  +Q+ LGH  +STT+IY
Sbjct: 267 VHGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303


>gi|12642602|gb|AAK00304.1|AF314189_1 integrase IntI8 [uncultured bacterium BAL3]
          Length = 316

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/310 (23%), Positives = 118/310 (38%), Gaps = 60/310 (19%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSL 88
             S+ T ++Y   T++F+ F               +L    + +F++   T + +   + 
Sbjct: 29  HYSRRTEEAYIHWTKRFIYFHGKRHP--------SELGEAAVTSFLNYLATDRNVAAATQ 80

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            ++LS +    K     ++     +  +   K+   +P  L   +   L+          
Sbjct: 81  NQALSALLFLYKETLGMEL---DWLDGLVRAKRPQRMPVVLTRDEVERLLCA-------- 129

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVR 207
              +D     +  LLYG G+R+ E L L  +++      + I+ GKG+K RI  L   + 
Sbjct: 130 ---LDGVQWLMASLLYGTGMRLMECLRLRVKDVDFGYGQILIRDGKGEKDRITMLPERLV 186

Query: 208 ------------------------------------KAILEYYDLCPFDLNLNIQLPLFR 231
                                               +A  E+     F        P   
Sbjct: 187 GPLKDQMDRARRIHDTDLREGFGEVHLPYALARKYPRAGFEWNWRYVFPSRNRSADPDDG 246

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
            IR   L+  V QR +R   R  G+      HT RHSFATHLL  G D R++Q +LGH  
Sbjct: 247 VIRRHHLDESVLQRAVRTASRVAGISKPVHCHTFRHSFATHLLQAGYDTRTVQELLGHSD 306

Query: 292 LSTTQIYTNV 301
           +STT IYT+V
Sbjct: 307 VSTTMIYTHV 316


>gi|120435311|ref|YP_860997.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|117577461|emb|CAL65930.1| phage integrase family protein [Gramella forsetii KT0803]
          Length = 385

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/299 (26%), Positives = 133/299 (44%), Gaps = 33/299 (11%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           I +  L      +   ++  R  S+ T+++Y   T +FL F  + T            S 
Sbjct: 84  IPNNRLPSPINAYRVYMKGLR-YSQSTIKTYCTFTEKFLKFHNYKT----------TFSQ 132

Query: 69  TEIRAFI-SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
            ++  F+ ++   +     S ++ +S +K + ++  +     E  I  +   KKS  LP 
Sbjct: 133 NDVSRFMEAEIALKSYSISSHRQCISALKHYFEFSDQ----AEFEISELVRPKKSRFLPT 188

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L++++ + L+              + ++  IL L+Y  GLR+ E ++L  ++I  D+  
Sbjct: 189 VLSKEEIIDLLRLTR----------NLKHRCILALIYSSGLRVGELINLHLKDIDIDRKQ 238

Query: 188 LRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           + I Q KG K R V L  S    +  Y            +     G   K  +    + +
Sbjct: 239 ILIKQAKGRKDRYVMLAESFLPLLYNYLQTY------EPKRYFTEGYDNKKYSSSAIRSF 292

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           ++   R   +    T HTLRHSFATH+L NG DLR IQ +LGH +  TT IYT+V  K+
Sbjct: 293 LKDSCRRAKISKKVTPHTLRHSFATHMLENGTDLRYIQELLGHSKPETTMIYTHVAKKD 351


>gi|171472293|gb|ACB46849.1| integrase [Pseudomonas stutzeri]
          Length = 320

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 71/320 (22%), Positives = 128/320 (40%), Gaps = 60/320 (18%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           +  S  T + Y    ++F+ F  +   +++  Q        EI AF+++    + +   +
Sbjct: 18  KHYSIRTERVYCEWVKRFIRFHQYRHPQEMGAQ--------EIEAFLTELAVARNVSAST 69

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++LS +    K +          + ++   KK   LP  L  ++  + +  +      
Sbjct: 70  QNQALSALLFLYKEVLS---IDLPWLADVVRAKKPQRLPVVLTIEEVRSALAQLESEP-- 124

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
                      +  LLYG G+R+ EAL L  +++   +  + I+ GKG K R+  L  S+
Sbjct: 125 ---------WLVYSLLYGTGMRLMEALRLRVKDVDFSRHEILIRDGKGMKDRVTMLPRSL 175

Query: 207 RKAIL------------------------------------EYYDLCPFDLNLNIQLPLF 230
            + +                                     E+     F  +     P  
Sbjct: 176 VQPLRRHLAVVKAIHDSEREQGRGDVWLPFALARKYPKAPKEWGWQYVFPASGLSVDPRS 235

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +R   L+    QR  ++  R   +    T HTLRHSFATHLL +G D+R++Q +LGH 
Sbjct: 236 GVVRRHHLDEKRIQRAFKRAVRGASIVKPATPHTLRHSFATHLLESGQDIRTVQELLGHS 295

Query: 291 RLSTTQIYTNVNSKNGGDWM 310
            + TT IYT+V ++ G   +
Sbjct: 296 DVKTTMIYTHVLNRGGLSVL 315


>gi|295110203|emb|CBL24156.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 322

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/306 (23%), Positives = 128/306 (41%), Gaps = 28/306 (9%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E+ + E LK    +L   +IE G S  TLQ Y+      L  +           ++R+++
Sbjct: 41  EVPNTEFLK---MFLDAKKIE-GCSDRTLQYYKVTVEHLLSQIK---------TSVRKIT 87

Query: 68  YTEIRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
             EIRA+++  ++  K  + ++      I SF  +L++     +S +  +  ++    + 
Sbjct: 88  TEEIRAYLADYQKNSKCSNVTIDNIRRNISSFFSWLEEEDYILKSPMRRIHKIRTKTVVK 147

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             + ++    L DN +          + R+ AI+ LLY  G+R+ E ++L   +I  +  
Sbjct: 148 SVITDEGIEKLRDNCM----------EIRDLAIIDLLYSTGIRVGELVNLNIDDIDLEGR 197

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
              + GKGDK R V      +  ++ Y        + N  L +        L     +  
Sbjct: 198 ECVVYGKGDKERRVYFDAKSKVHLMRYIAER---KDANPALFVTLDAPHDRLKISGVEIR 254

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +RQL R L L      H  R + AT  +  G  +  +Q ILGH ++ TT  Y  VN  N 
Sbjct: 255 LRQLGRKLELER-IHPHKFRRTMATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVNQNNV 313

Query: 307 GDWMME 312
                +
Sbjct: 314 KSSHQK 319


>gi|119960917|ref|YP_947150.1| Tn554-related transposase A [Arthrobacter aurescens TC1]
 gi|119947776|gb|ABM06687.1| Tn554-related transposase A [Arthrobacter aurescens TC1]
          Length = 368

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 67/350 (19%), Positives = 134/350 (38%), Gaps = 74/350 (21%)

Query: 18  RQNWLQNL-EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
            + +L  L  IER  S  T+++Y  D + F  FLA            R+++  ++  F+ 
Sbjct: 29  VEAYLAFLSAIER--SPNTVKAYAHDLKDFFAFLAQRG------LDWRRVTLEDVGGFVE 80

Query: 77  KRR----------------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL- 119
             R                  ++G  ++ R LS + SF ++  +  +     ++      
Sbjct: 81  WLRMPPAGRAGQVAVLPVTAPQVGAGTINRKLSAVSSFYQHQARHGVELGDLLVKWAAPG 140

Query: 120 -------------------------KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
                                    +    LPR L   +  +++D               
Sbjct: 141 ARSSWKPFLHHISKGRPQRRRAIALEAPVKLPRVLTVGEVQSILDAC----------TRL 190

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---------QGKGDKIRIVPLLPS 205
           R+  +  +L+  G+RI E L L   ++   +  +R+         + K  + R VP+   
Sbjct: 191 RDRFLFAVLFDTGMRIGEVLGLRHDDLSAAEREVRVVARLNENGARAKTGRPRTVPVSAE 250

Query: 206 VRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           + +   +Y  L   DL+ + + + L+ G  G  L+       + +LRR  G+      H 
Sbjct: 251 LLRLYADYLHLEYGDLDSDYVFVNLWGGRVGHALSYRSVYDLVGRLRRRTGVDFD--PHW 308

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
            RHS AT +L +   L  + S+LGH  ++TT  +Y ++ +++    + + 
Sbjct: 309 FRHSAATRMLRDSVPLEVVSSLLGHASVTTTMDVYGHLTAEDARMVLEKA 358


>gi|88857306|ref|ZP_01131949.1| site-specific recombinase IntI4 [Pseudoalteromonas tunicata D2]
 gi|88859550|ref|ZP_01134190.1| site-specific recombinase IntI4 [Pseudoalteromonas tunicata D2]
 gi|88818567|gb|EAR28382.1| site-specific recombinase IntI4 [Pseudoalteromonas tunicata D2]
 gi|88820503|gb|EAR30315.1| site-specific recombinase IntI4 [Pseudoalteromonas tunicata D2]
          Length = 323

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/329 (23%), Positives = 130/329 (39%), Gaps = 64/329 (19%)

Query: 21  WLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +L  +  E   R  +K T+++Y    R +++F           Q  + L+   +  F++ 
Sbjct: 7   FLDFVTEEMYKRRYAKRTVETYLHWIRFYILFHKK--------QHPKDLAEQHVEQFLTY 58

Query: 78  RR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               + +  ++   +L+ +    K + +R ++   N       +K   LP  L + +   
Sbjct: 59  LAVNRHVAVQTQALALNALSFLYKEILQRPLSLNLNFNQSSKPRK---LPVVLTKDEIKR 115

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195
           L+             ID     +  LLYG GLR+ EA+ L    I  D  ++ +  GKG 
Sbjct: 116 LLRE-----------IDPGYLLLAQLLYGSGLRLMEAVRLRVAAIDFDYLSIMVWHGKGG 164

Query: 196 KIRIVPLLPSVRKAILEY----------------YDLCPFDLNLNIQLP----------L 229
           K R V L P +  A+                   Y        L  + P          L
Sbjct: 165 KHRRVTLAPELVPALKRQTSLVEAYYQQDLETADYAGVWLPFALARKYPSAPKELGWQYL 224

Query: 230 FRG-----------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
           F             +R   ++    Q+ ++   R   +    + HTLRHSFATHLL  G 
Sbjct: 225 FPSGKLSIDPDSTLLRRHHIDESGLQKAVKSASRKAAIGKHVSCHTLRHSFATHLLQAGM 284

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           D+R++Q  LGH  + TTQIYT+V  + G 
Sbjct: 285 DIRTVQEQLGHSDVKTTQIYTHVLKQGGN 313


>gi|297617958|ref|YP_003703117.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297145795|gb|ADI02552.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 280

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 66/271 (24%), Positives = 125/271 (46%), Gaps = 22/271 (8%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T ++Y  D   F  + A    E +    +  +   E ++ +     + +   ++ R ++ 
Sbjct: 14  TARAYREDLLDFSRWFAETNGESLEPHLVTSIDLKEYQSHMI--LNRGLKPATVNRRMAA 71

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKS---NSLPRALNEKQALTLVDNVLLHTSHETKW 151
           I++++++ +++ +         R  K++      P+AL++++    +  V        K 
Sbjct: 72  IRAWMRWCQEQGLIENLP----RWPKRAAQVQHAPKALSKREQERFLRAV-------EKE 120

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
            + R+ A++ L+   GLR+ EA  +   +  I D +  + I GKG K R VPL    R  
Sbjct: 121 GNRRDVALIGLMLFAGLRVGEAARVRVSDVSISDRKGKVSITGKGMKHREVPLGFDARNM 180

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHS 268
           + ++ +          Q  LF G  G  ++    Q  I++      + P   T H LRH+
Sbjct: 181 VRDWLN---HQAQHAQQEWLFPGQNGGHISARAVQHMIKKYAWQARIEPQKITPHVLRHT 237

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           FAT+LL +G DL ++ ++LGH RL TT  YT
Sbjct: 238 FATNLLRDGVDLVTVAALLGHSRLDTTARYT 268


>gi|254450263|ref|ZP_05063700.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264669|gb|EDY88939.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 315

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 123/293 (41%), Gaps = 30/293 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ  ++++ I R + + T + +    + F  FL          ++    +  E+RA+   
Sbjct: 30  RQRMIEDMRI-RAIGETTQKGHIRAIKHFATFLG---------RSPDTATPDELRAYQLH 79

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
               ++   +    +  ++ F      R+         M+  +K   LP  L+ ++   L
Sbjct: 80  MTDTEVTTSTFNTRIVSLRLFFGVTCGREEMK----RYMQFRRKPRRLPVVLSVEEIGDL 135

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
           +  V                A L + YG GLR SE   L   +I   +  + + +GK  K
Sbjct: 136 LAAV--------PGPGLTYRAALGISYGAGLRASEVCHLKVVDIDSGRMLIHVDEGKNGK 187

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLG 255
            R   L P +   + EY+      L    +  LF G  +  PL+     R     +   G
Sbjct: 188 DRKAMLSPGLLDLLREYW------LEARPEGWLFPGKPKINPLSLRQLNRAFTSAKHMAG 241

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +    T HTLRHSFATHLL  G D+R IQ +LGH +LSTT  YT+V +K   +
Sbjct: 242 INKPATLHTLRHSFATHLLEAGTDVRVIQVLLGHSKLSTTARYTHVAAKTIRN 294


>gi|149198438|ref|ZP_01875483.1| integron integrase [Lentisphaera araneosa HTCC2155]
 gi|149138444|gb|EDM26852.1| integron integrase [Lentisphaera araneosa HTCC2155]
          Length = 424

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 87/343 (25%), Positives = 140/343 (40%), Gaps = 66/343 (19%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
            L      E ++  + +   L ++   S  T++SY     ++L       +E        
Sbjct: 99  KLSVAFDVEKVEYLKKFEGALRLQ-QKSLRTIRSYVSWAERYLAHSDNKCQE-------- 149

Query: 65  QLSYTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
                ++R F+S       +   +  ++L  + S  K + ++ +   S  L     KKS 
Sbjct: 150 ---TEKVRDFLSYLALRHNVAASTQNQALCALVSLFKCVFQKDLGDISGSLRS---KKSE 203

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            LP  L+ ++  +L+D  L            +   ++ L+YG GLR +E L L  +++  
Sbjct: 204 RLPVVLDVEEVRSLIDVTL-----------GQEKLMMKLIYGGGLRKNECLRLRIKDLDF 252

Query: 184 DQSTLRIQ-GKGDKIRIVPLLPSVR----------------------------KAILEYY 214
            +  L I+ GKGDK R   L P +                              A++  Y
Sbjct: 253 KRGALNIRAGKGDKDRQTLLSPKLEGEVNAHICEIKKLYDKDRTEGVEGVYLPNALVRKY 312

Query: 215 DLCPFDLNLNIQLPL----------FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
                D N     P            + IR   L+     R +++  + +G+    T HT
Sbjct: 313 PSASKDWNWFWLFPSPALSIDPMCKVKTIRRHHLSGTGLSRVLKEKCKEVGIKKRCTVHT 372

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           LRHSFATHLL  G DLR+IQ +LGH  +STTQIYT+V S N  
Sbjct: 373 LRHSFATHLLERGTDLRTIQELLGHEDISTTQIYTHVLSLNQS 415


>gi|209809323|ref|YP_002264861.1| site-specific recombinase IntIA [Aliivibrio salmonicida LFI1238]
 gi|208010885|emb|CAQ81288.1| site-specific recombinase IntIA [Aliivibrio salmonicida LFI1238]
          Length = 327

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 80/324 (24%), Positives = 132/324 (40%), Gaps = 64/324 (19%)

Query: 19  QNWLQNLEI---ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           Q ++  L I    RGL+  T + Y      F+ F  + ++E        ++   +I +++
Sbjct: 12  QRFIDQLRIFIRTRGLAYNTEKHYIYWISSFIRFKNYTSKE--------EIEAFDIPSYL 63

Query: 76  SKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
                 Q +   + K +L+ +    +   ++ + +    L+ +  KK+  LP     K+A
Sbjct: 64  EHLVIKQNVSPNTQKTALNALVFLCREFLQQSVDS----LDFKRSKKATKLPTVFTHKEA 119

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GK 193
           + ++ N           ++     I  L+YG GLRI+EAL L   +I  D+  + I+ GK
Sbjct: 120 MDVIHN-----------LNHPIKLIAQLMYGSGLRINEALRLRVNDIDLDKKIITIKSGK 168

Query: 194 GDKIRIVPLLPSVRKAILE------------------------------------YYDLC 217
           G+K R   L  SV  AI                                      Y    
Sbjct: 169 GNKDRTSILPESVVDAIKTQLAFVKQQHKLDAINGNDEVYMSYALAEKYPTQAKSYGWQY 228

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            F      + P     R   L     Q  +++    +G+    + HT RHSFAT +L  G
Sbjct: 229 VFPSPQISKDPRSEKHRRHHLLDRTIQSAVKKSILKVGIDKKASCHTFRHSFATRVLERG 288

Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301
            DLR+IQ +LGH  + TTQIYT+V
Sbjct: 289 ADLRTIQELLGHSDIKTTQIYTHV 312


>gi|301162387|emb|CBW21932.1| putative tyrosine recombinase [Bacteroides fragilis 638R]
          Length = 308

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 136/287 (47%), Gaps = 30/287 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L  ++  S  T+++Y+     F+ +           Q +  L+  +I +++   
Sbjct: 34  RGYLE-LLEQKRYSLSTIKAYKIYFSDFMEYHKG--------QDLDLLTVEDINSYMLHM 84

Query: 79  -RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            + + I        ++ IK + + ++K K         +   K+  +LP  L+ ++  ++
Sbjct: 85  VKEKHISATQQNMRINAIKFYYEKVRKGKRQYYG---GIARAKEYKALPEVLSREEMKSI 141

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                       +  + ++  ++ L+Y  GLR SE L+LTPQ+I+ ++  +RI GKG K 
Sbjct: 142 F----------AQLSNRKHRCMISLIYSAGLRRSELLNLTPQDIISERMLIRIAGKGKKC 191

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGL 256
           R   L   +   + +YY           Q  LF G +  +  +P    + +++  R  G+
Sbjct: 192 RYSLLSEKLLNELRDYYR------EYRPQKWLFEGEQAGEQYSPSALVKILKEAARKAGI 245

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
                 H LRH+FATHLL  G DLR+IQ ++GH  + TT IY +V++
Sbjct: 246 KHRVHLHMLRHTFATHLLEQGTDLRTIQELMGHTDIKTTAIYLHVSN 292


>gi|188585853|ref|YP_001917398.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350540|gb|ACB84810.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 305

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 61/307 (19%), Positives = 138/307 (44%), Gaps = 17/307 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             Q+++++ E  + L++ T+  Y    ++F  F++     +  +     ++ + I++++ 
Sbjct: 6   AIQDFIEDREF-KNLTQKTISGYSATLKEFQEFIS-----EQEVVNANDVTQSHIKSYLL 59

Query: 77  KRRTQKIG-DRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQ 133
             +  K     S+   L  +K F  YL+  ++ +E  +    +  +K+   +    N+ Q
Sbjct: 60  HCKKNKNNNPTSINHKLHNLKIFFNYLQDIEVISEKQNPAKKINYVKEDIKI-EVFNDYQ 118

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++D        E  +   RN  I+  L G G R+ E ++L   +I    +T+   GK
Sbjct: 119 IKQMLDYYRRIKRREKGFYAYRNYTIIVFLLGTGSRLGELINLRWDDIDFINNTIVFYGK 178

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
             +   +P+   ++K ++EY   C      ++   +F   + + L     +   ++L++ 
Sbjct: 179 KREYSSIPMTEKLKKELMEYKTYCEQTFE-SLSEYVFTNRKNEKLTDNAVKCIFKRLKKV 237

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           +    +  + HT RH+FA +++ N  D+ ++Q +L H  LS  + Y N      G  + E
Sbjct: 238 MNFKNVRVSCHTFRHTFAVNMIKNNCDIFTLQKMLRHKDLSMCRRYVNF-----GTALKE 292

Query: 313 IYDQTHP 319
             D+ +P
Sbjct: 293 QNDKFNP 299


>gi|15866616|gb|AAL10406.1|AF416297_1 IntI3 integrase [Serratia marcescens]
 gi|801874|dbj|BAA08929.1| integrase [Serratia marcescens]
 gi|16902299|dbj|BAB71947.1| integrase [Serratia marcescens]
          Length = 346

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 71/329 (21%), Positives = 135/329 (41%), Gaps = 59/329 (17%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           S +LL + +  ++ L      S  T ++Y    + F+++ A         +  R++   E
Sbjct: 17  SIKLLDQVRERVRYL----HYSLQTEKAYVYWAKAFVLWTARSHG---GFRHPREMGQAE 69

Query: 71  IRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +  F++   T+K +   + +++L+ +    + +   ++     +  +    +   +P  L
Sbjct: 70  VEGFLTMLATEKQVAPATHRQALNALLFLYRQVLGMEL---PWMQQIGRPPERKRIPVVL 126

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
             ++  TL+ ++               + +  LLYG GLR+ EAL L  +++  D+  + 
Sbjct: 127 TVQEVQTLLSHM-----------AGTEALLAALLYGSGLRLREALGLRVKDVDFDRHAII 175

Query: 190 IQ-GKGDKIRIVPLLPSVRKAILE------------------------------------ 212
           ++ GKGDK R+V L  ++   +                                      
Sbjct: 176 VRSGKGDKDRVVMLPRALVPRLRAQLIQVRAVWGQDRATGRGGVYLPHALERKYPRAGES 235

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +     F        P     R   L      R +++     G+    + HTLRHSFATH
Sbjct: 236 WAWFWVFPSAKLSVDPQTGVERRHHLFEERLNRQLKKAVVQAGIAKHVSVHTLRHSFATH 295

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 296 LLQAGTDIRTVQELLGHSDVSTTMIYTHV 324


>gi|261212788|ref|ZP_05927072.1| integron integrase IntI4 [Vibrio sp. RC341]
 gi|260837853|gb|EEX64530.1| integron integrase IntI4 [Vibrio sp. RC341]
          Length = 320

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/321 (24%), Positives = 133/321 (41%), Gaps = 61/321 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           R  +K T+++Y     +++ F        +  Q        E+  F++    Q  +  ++
Sbjct: 16  RYYAKKTIEAYLHWITRYIHFHNKKHPSLMGDQ--------EVEEFLTYLAVQGKVATKT 67

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
              +L+ +    K + K  ++ E   +  +  +    LP  L   +   L++        
Sbjct: 68  QSLALNSLSFLYKEILKTPLSLE---IRFQRSQLERKLPVVLTRDEIRRLLEV------- 117

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
               +D +    + LLYG GLR+ E + L  Q++  D   +RI QGKG K R V L   +
Sbjct: 118 ----VDPKYQLPIKLLYGSGLRLMECIRLRVQDVDFDYGAIRIWQGKGGKNRTVTLAKEL 173

Query: 207 R-----------------------------KAILEYYDLCPFDLNLNIQLPLFR------ 231
                                          A+ E Y   P++   +   P F+      
Sbjct: 174 YPHLKEQIALVKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPE 233

Query: 232 --GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
              +R   +N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH
Sbjct: 234 SDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGH 293

Query: 290 FRLSTTQIYTNVNSKNGGDWM 310
             + TTQIYT+V  +     +
Sbjct: 294 TDVKTTQIYTHVLDRGASGVL 314


>gi|12831419|gb|AAK02076.1| site-specific recombinase IntIA [Vibrio parahaemolyticus]
          Length = 320

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 80/321 (24%), Positives = 130/321 (40%), Gaps = 61/321 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           R  +  T++SY    ++F++F          +    +LS  ++  F+S     +K+  ++
Sbjct: 16  RHYANKTIESYLFWIKRFIVFHQ--------LAHPSKLSEDDVIRFLSHLAIDEKVAVKT 67

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
              +L+ I    +   K  ++ +   +  +       LP  L   +    V +       
Sbjct: 68  QALALNAISFLYRDFFKTPLSLD---MRFQKSLTEKKLPVVLTRDEVRRFVQH------- 117

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
               ID R    + LLYG GLRI E L L  Q+I  D   +R+ QGKG K R V L   +
Sbjct: 118 ----IDPRYKLHIQLLYGSGLRIMECLRLRIQDIDYDYGAVRVWQGKGGKNRTVTLAKEL 173

Query: 207 RKAILEYYDLCPFDLNLNIQLP--------------------------LFRGI------- 233
            + +    +L       +  +P                          LF          
Sbjct: 174 HEPLKSQMNLARNYYFKDRHVPGYAGVYISEGLRRKYPNAELDFNWHFLFPSNKLSVDKE 233

Query: 234 ----RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
               R   +N    QR +++      +  + T HTLRHSFATHLL +G D+R++Q  LGH
Sbjct: 234 TGQLRRHHINESAIQRAVKRSALDANIEKTVTCHTLRHSFATHLLESGADIRTVQEQLGH 293

Query: 290 FRLSTTQIYTNVNSKNGGDWM 310
             + TTQIYT+V  +  G  +
Sbjct: 294 TDVKTTQIYTHVIERGAGGVL 314


>gi|307266069|ref|ZP_07547615.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918938|gb|EFN49166.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 291

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 77/306 (25%), Positives = 139/306 (45%), Gaps = 29/306 (9%)

Query: 20  NWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           +WL+  E E    G S+ T+ SY  D ++FL + +    ++   + + Q    E R ++ 
Sbjct: 2   DWLEKFEEELKQTGKSQNTIISYCTDIKEFLKWFSDTYAKEFDGRILEQ-DVREYRNYL- 59

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                K+   S+ R ++ +K+F ++L +     E++I  +      +   R ++  +   
Sbjct: 60  -LNIAKLKPSSINRKMAALKNFNQFLIQTGTGIEADICGISVADIHDREIRTISRNELNR 118

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-------DQSTLR 189
           L   V    +         + A++ LL G G+R+SE +SLT ++I         + S + 
Sbjct: 119 LKRAVYASGNKR-------DIALIELLIGTGVRVSELVSLTTEDIHLTARNGKENYSYIV 171

Query: 190 IQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           I+ GKG+K R +PL   V+KA+ EY               +F G RG PL      + I+
Sbjct: 172 IRNGKGNKYREIPLNSQVKKALEEYLVTRSHLSGR-----IFIGQRG-PLRRESVDKIIK 225

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGG 307
           +  R  G+    +AH LRH+F T L+S    +  I  + GH  + TT   Y  V+  +  
Sbjct: 226 KYCRMAGIE-EISAHVLRHTFCTRLMSENVPIPIISKLAGHSSIQTTMDFYVRVSRADKT 284

Query: 308 DWMMEI 313
             + ++
Sbjct: 285 AAVEKL 290


>gi|167766929|ref|ZP_02438982.1| hypothetical protein CLOSS21_01446 [Clostridium sp. SS2/1]
 gi|317499598|ref|ZP_07957861.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167710904|gb|EDS21483.1| hypothetical protein CLOSS21_01446 [Clostridium sp. SS2/1]
 gi|316893147|gb|EFV15366.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 363

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 58/306 (18%), Positives = 119/306 (38%), Gaps = 26/306 (8%)

Query: 34  LTLQSYECDTRQFLIFL-------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ----- 81
            T  +Y  D R F  FL         Y+     +  + ++   ++  ++   +       
Sbjct: 43  RTRIAYAYDLRVFFHFLIDENPAYRNYSVLDFKVSDLDKIESVDLEEYMEYLKVYISEEQ 102

Query: 82  ----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
               +  ++ + R +S ++SF  Y  KR++  ++  L +   K        L   +  +L
Sbjct: 103 HKHMQNTEQGVFRKMSALRSFYGYFYKRQLIEKNPTLLVDMPKIREKEIIRLEADEVASL 162

Query: 138 VDNVLLHTSHETKWIDAR-------NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           +D V     H T    A        + AI+ LL G G+R+SE + L   ++    + L +
Sbjct: 163 LDFVEHGGDHLTGQKRAYYEKTKERDLAIITLLLGTGIRVSELVGLNIDDVDFRNNGLHL 222

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIR 248
             KG K   V     V  A+ +Y +     +      +  LF  ++ + +     Q  ++
Sbjct: 223 IRKGRKEMTVYFGNEVADALEQYIEGSRKLIIPKEGHEDALFYSMQRRRIGVQAVQNLVK 282

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGG 307
           +  + +      T H LR ++ T L     D+  +  +LGH  ++TT+  Y  ++     
Sbjct: 283 KYAKEVTPLKKITPHKLRSTYGTALYQETDDIYLVAEVLGHSDVNTTRKHYAAMSDTRRR 342

Query: 308 DWMMEI 313
               ++
Sbjct: 343 QAAGKV 348


>gi|88813691|ref|ZP_01128918.1| Integron integrase [Nitrococcus mobilis Nb-231]
 gi|88789045|gb|EAR20185.1| Integron integrase [Nitrococcus mobilis Nb-231]
          Length = 320

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/330 (22%), Positives = 134/330 (40%), Gaps = 64/330 (19%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
             LL + ++ ++     R  S  T Q+Y    R+F++F              R +   E+
Sbjct: 5   PRLLDQVRDRIRF----RHYSIRTEQAYLGWIRRFILFHRKRHP--------RDMGAPEV 52

Query: 72  RAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
             F+S   T+  +   +  ++LS I    + +   ++        ++  K+   LP  L 
Sbjct: 53  ERFLSALATEYNVAASTQNQALSAILFLYREVLGIELPWLD---GVKRAKRPQRLPVVLT 109

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            ++  +++ +           +  RN+ +  LLYG GLR+ E + L  +++  D+  + +
Sbjct: 110 REEIRSVLAH-----------LQGRNALMASLLYGAGLRLLECVRLRVKDVELDRRQIVV 158

Query: 191 Q-GKGDKIRIVPLLPSVRKAI------------------------------------LEY 213
           + GKG + R+  L  S+R ++                                     E+
Sbjct: 159 RDGKGGRDRVTLLPESMRPSLEEQIDRVREIHNQDLTDGFGAVWLPHALARKYPNAPREF 218

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                F        P         ++    QR ++Q  R  G+    + HT RHSFATHL
Sbjct: 219 GWQYVFPSAKRSTDPRSGRRGRHHIDEQTLQRAVKQAVRAAGVSKPASCHTFRHSFATHL 278

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           L  G  +R+IQ +LGH  ++TT IYT+V +
Sbjct: 279 LEAGYGIRTIQELLGHRDVNTTMIYTHVAN 308


>gi|145641992|ref|ZP_01797565.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           R3021]
 gi|145273358|gb|EDK13231.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           22.4-21]
          Length = 185

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 67/183 (36%), Positives = 94/183 (51%), Gaps = 6/183 (3%)

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
           L  +   + ID R+ AIL L+Y  GLR+SE   L   +I      +R+ GKG+K R+VP 
Sbjct: 9   LLANDSKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPF 68

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
                 AI E+  +    L       LF    G  ++    Q+ +       GL      
Sbjct: 69  GRYASHAIQEWLKVR--ALFNPKDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNP 126

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           H LRHSFATH+L    DLR++Q +LGH  LSTTQIYT++N ++    + E+YDQ HP   
Sbjct: 127 HKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEVYDQAHPRAK 182

Query: 323 QKD 325
           +K 
Sbjct: 183 RKK 185


>gi|108861476|gb|ABG21674.1| class 2 integrase [Providencia stuartii]
 gi|108861489|gb|ABG21686.1| class 2 integrase [Providencia stuartii]
          Length = 325

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 76/328 (23%), Positives = 132/328 (40%), Gaps = 64/328 (19%)

Query: 21  WLQNLEI---ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +L ++     ++G +  T ++Y    ++F++F      + +           E+R F+S 
Sbjct: 6   FLNSIRTDMRQKGYALKTEKTYLHWIKRFILFHKKRHPQTMG--------SEEVRLFLSS 57

Query: 78  R-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              ++ +   + K +L+ +        ++ +     I       K   LP  ++  +   
Sbjct: 58  LANSRHVAINTQKIALNALAFLYNRFLQQPLGDIDYI----PASKPRRLPSVISANEVQR 113

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGD 195
           ++  +           D RN  I  LLYG GLRI+E L L  ++   D   + +  GKG 
Sbjct: 114 ILQVM-----------DTRNQVIFALLYGAGLRINECLRLRVKDFDFDNGCITVHDGKGG 162

Query: 196 KIRIVPLLP---SVRKAILEYYDLCPFDLNLNIQLP---------------------LFR 231
           K R   L     S  K ++E   L   D NL    P                     +F 
Sbjct: 163 KSRNSLLPTRLISAIKQLIEQARLIQQDDNLQGVGPSLPFALDRKYPSAYRQAAWMFVFP 222

Query: 232 G-----------IRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGD 279
                       +    L+  V ++ ++   +  G+     T HT RHSFATHLL  G D
Sbjct: 223 SSTLCNHPYNGKLCRHHLHDSVARKALKAAVQKAGIVSKRVTCHTFRHSFATHLLQAGRD 282

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +R++Q +LGH  + TTQIYT+V  ++  
Sbjct: 283 IRTVQELLGHTDVKTTQIYTHVLGQHFA 310


>gi|327538852|gb|EGF25495.1| tyrosine type site-specific recombinase [Rhodopirellula baltica
           WH47]
          Length = 301

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 65/271 (23%), Positives = 118/271 (43%), Gaps = 31/271 (11%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + L I R  +  T+++Y      FL +             + Q+   +IR ++       
Sbjct: 60  RELRI-RFYAASTIKNYRSAWVCFLRWYRG---------PLDQIDQEDIREYLELLVNGG 109

Query: 83  IGDRSLKRSLSGIKSFL-KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                +  +LS +++ L K+   R        + + + +KS  LP  +++K+   +++  
Sbjct: 110 ASASEVSVTLSALRTGLDKFCLLRC------TVGLVSPRKSKQLPVVMSKKEVQRMMEA- 162

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV 200
                        R+  +L +LY  GLR++E   L   +   D+  +R+Q GKG K R V
Sbjct: 163 ---------ARTLRDKLLLTVLYATGLRVAEVARLQWSDFDFDRQQIRVQLGKGKKDRYV 213

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
            L   +   + + +        +    P       + L+P   QR ++Q R   G+  + 
Sbjct: 214 MLADDLLPLMRQLWR---RTKGVGYLFPSEGRRVDRHLSPRTIQRAVKQARILSGIGKAV 270

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           T H+ RHSFATHL+ +G D+R IQ +LGH  
Sbjct: 271 TPHSFRHSFATHLIESGTDIRFIQKLLGHTN 301


>gi|312621789|ref|YP_004023402.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202256|gb|ADQ45583.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 286

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/306 (23%), Positives = 141/306 (46%), Gaps = 24/306 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +LKE +++L+     +  ++ T++SY  D   F+ +    T ++   + + +    E ++
Sbjct: 1   MLKEFEDYLKT----QDFTENTIKSYTKDVELFMRWYVDTTGQEFLPENLTEFDLVEYKS 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--PRALNE 131
           ++ +   +     ++ RS+  ++ F+ +L  R +  +     ++ +K +     P  L++
Sbjct: 57  YLLR---KNHKPSTVNRSIISLRKFVHFLLDRGLLNKDISTRLKQVKDTTRNLSPVVLDK 113

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLR 189
           K        V        ++   R+ A + LL   G+RISEA++L  ++  I + +  ++
Sbjct: 114 KDIYKFRRTV-------HQFGKTRDVAFVELLLNTGMRISEAINLKLEDVEISERKGKVK 166

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           I GKG   R VPL    RK + EY    P+    +    LF    GK L      + I++
Sbjct: 167 IWGKGRSYREVPLNSDARKYLSEYLKKRPY----SETNYLFVTSTGKKLTRNSAYKIIQK 222

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +  GL      H LRH FA  L+  G ++  +Q +LGH R+ TT  Y   N+K   + 
Sbjct: 223 YAKLAGL--CLHPHMLRHFFAQTLIDKGLNIYDVQQLLGHQRIETTLRYKKPNTKLQEEM 280

Query: 310 MMEIYD 315
           +  + +
Sbjct: 281 VENLLE 286


>gi|87125131|ref|ZP_01080978.1| integron integrase [Synechococcus sp. RS9917]
 gi|86167451|gb|EAQ68711.1| integron integrase [Synechococcus sp. RS9917]
          Length = 323

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 77/325 (23%), Positives = 141/325 (43%), Gaps = 62/325 (19%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q + + L+  R  ++ T+ +YE   R+FL F          ++  R++   E+ AF++ 
Sbjct: 11  IQRYREELQA-RHYARRTVATYEQWLRRFLRFH--------GMRHPREMGSAEVNAFLTH 61

Query: 78  RRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              +  +   +  ++LS +    + L +R +        +   +    LP  L+E +   
Sbjct: 62  LAVEGKVSASTQNQALSALLFLYRELLERDLEL----EGVVRARTRRRLPVVLSEAEVRA 117

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGD 195
           +              ++   + ++ LLYG GLR+ EAL L  +++  ++  L ++ GKG 
Sbjct: 118 V-----------RLHLEGVPALVVGLLYGSGLRLMEALRLRVKDLDFERRELTVRDGKGG 166

Query: 196 KIRI----VPLLPSVRKAILEYYDLCPFDLNLNI---------------------QLPLF 230
           K R+      L+P +R+ +L    L   DLN                           +F
Sbjct: 167 KDRMTLLPQSLVPELRQHLLVVRQLHRADLNAGWGKVLMPYALARKYPHADREWGWQWVF 226

Query: 231 RGIRGKP-----------LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
              R              ++P + Q+ ++Q      +  + + HT RHSFATHLL  G D
Sbjct: 227 PQQRRWRDSVSGQQGRHHIDPALVQKAVKQAVAEAAVTKAASCHTFRHSFATHLLERGQD 286

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSK 304
           +R+IQ +LGH  + TT IYT+V ++
Sbjct: 287 IRTIQELLGHQDVCTTMIYTHVLNR 311


>gi|295399108|ref|ZP_06809090.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978574|gb|EFG54170.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
          Length = 324

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 73/328 (22%), Positives = 134/328 (40%), Gaps = 42/328 (12%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL    Q++L   +  + LS  TL SYE   + F+ +L      +  I+ +  +    IR
Sbjct: 5   ELDFYLQDFLLYCQS-KNLSPKTLSSYEQSLKLFIAYLK----NEHGIEEVDAVRTGHIR 59

Query: 73  AFISKRRTQK-------------------------IGDRSLKRSLSGIKSFLKYLKKRKI 107
            +I+  + +                          I + ++   +  IK F  +L +   
Sbjct: 60  QYIAYLQERGKYTVVNREASRLINRPENRRDYNKKISNVTINNYIRNIKVFFNWLHEEGE 119

Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
             ++ +  ++ +K        +++++      N+LL     T +   RN  I  LL   G
Sbjct: 120 IHKNPVDKIKQIKTERKQKAGISQEEF-----NLLLSQFDYTTFHGYRNKVITMLLQDTG 174

Query: 168 LRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           +RI E L+LT  +I      + ++  KG K R V     + + +  Y        +  + 
Sbjct: 175 MRIGECLALTVDDIDFKHRMILVKKTKGRKERYVYFSQVMARELKHYIRFKDRYTDTEL- 233

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
             LF   R  PL    F++ ++Q    +GL  S   H +R++FA   L NGGDL ++  I
Sbjct: 234 --LFPTTRNTPLTVHSFEKQLKQAGERIGL--SIHPHQIRNNFARQYLLNGGDLYTLSRI 289

Query: 287 LGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           LGH  +  T + Y ++  +     +  I
Sbjct: 290 LGHSSVKVTEEAYMDLTREEMQRSINNI 317


>gi|310695289|gb|ADP05693.1| putative integrase [uncultured microorganism]
          Length = 319

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 75/329 (22%), Positives = 131/329 (39%), Gaps = 64/329 (19%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           +  LL E +  ++ L    GL+  T ++Y    R+F++               R++   E
Sbjct: 17  APRLLDEVRGRMRRL----GLAIRTEKTYVDWIRRFIVANGKRHP--------REMGAVE 64

Query: 71  IRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +  F+++   +  +   +  ++LS +    + +  +++     + N+R  K+ + LP  L
Sbjct: 65  VEWFLTELAVKGKVAASTQNQALSALLFLYRKVLGQEL---PWMENIRRAKRPDRLPIVL 121

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              +   ++             +      +  LLYG GLR+ E + L  Q++   +  + 
Sbjct: 122 TFDEVSRIL-----------GRMSGTTHLMASLLYGSGLRLMECVRLRVQDVDLLRREIL 170

Query: 190 IQ-GKGDKIRIVPLLPSVRKAI------------------------------------LE 212
           ++ GKG K R   L   V  A                                      E
Sbjct: 171 VRHGKGGKDRRTVLPIMVAAAFQAHLIQIRILHERDLQAGHGDVWLPSALERKYPNAARE 230

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +     F        P     R   ++    QR +R   +  G+    T HTLRHSFATH
Sbjct: 231 WIWQYAFPSRSRSIDPRSGVERRHHVDEKTLQRAVRIAVQAAGIDKPATCHTLRHSFATH 290

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LL +G D+R+IQ +LGH  +STT IYT+V
Sbjct: 291 LLESGSDIRTIQGLLGHSDVSTTMIYTHV 319


>gi|99031762|pdb|2A3V|A Chain A, Structural Basis For Broad Dna-Specificity In Integron
           Recombination
 gi|99031763|pdb|2A3V|B Chain B, Structural Basis For Broad Dna-Specificity In Integron
           Recombination
 gi|99031764|pdb|2A3V|C Chain C, Structural Basis For Broad Dna-Specificity In Integron
           Recombination
 gi|99031765|pdb|2A3V|D Chain D, Structural Basis For Broad Dna-Specificity In Integron
           Recombination
          Length = 320

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 78/321 (24%), Positives = 134/321 (41%), Gaps = 61/321 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           R  +K T+++Y     +++ F        +  +        E+  F++    Q  +  ++
Sbjct: 16  RYYAKKTIEAYLHWITRYIHFHNKKHPSLMGDK--------EVEEFLTYLAVQGKVATKT 67

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
              +L+ +    K + K  ++ E   +  +  +    LP  L   +   L++        
Sbjct: 68  QSLALNSLSFLYKEILKTPLSLE---IRFQRSQLERKLPVVLTRDEIRRLLEI------- 117

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
               +D ++   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V L   +
Sbjct: 118 ----VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKEL 173

Query: 207 R-----------------------------KAILEYYDLCPFDLNLNIQLPLFR------ 231
                                          A+ E Y   P++   +   P F+      
Sbjct: 174 YPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPE 233

Query: 232 --GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
              +R   +N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH
Sbjct: 234 SDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGH 293

Query: 290 FRLSTTQIYTNVNSKNGGDWM 310
             + TTQIYT+V  +     +
Sbjct: 294 TDVKTTQIYTHVLDRGASGVL 314


>gi|307822466|ref|ZP_07652697.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307736070|gb|EFO06916.1| integrase family protein [Methylobacter tundripaludum SV96]
          Length = 291

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 82/298 (27%), Positives = 128/298 (42%), Gaps = 30/298 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ  + ++ + R LS  T  SY    ++F  FL          ++    S  ++R +   
Sbjct: 12  RQRMIDDMRM-RKLSPKTQASYIRVVKRFAGFLR---------RSPDTASVEDLRRYQLH 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I   SL  +L+G+K   +    R       +  M  +   + LP  L+ ++   L
Sbjct: 62  LVDHGISPISLNATLTGLKFLFETTLDRPEL----LTKMHPVHVPHKLPVVLSREEVARL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
           +  V           + ++   L + YG GLR SE +SL   +I   + TLRI QGKG K
Sbjct: 118 IAAVD----------NLKHQTALSVAYGAGLRASEVVSLKVGDIDSQRMTLRIEQGKGSK 167

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLG 255
            R   L P + + +  ++        +     LF G+    PL+     R I        
Sbjct: 168 DRYAMLSPVLLERLRAWWKFAHAQGKMLQGGWLFPGLDPIDPLSTRQLNRAIHAAAEAAR 227

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +    + HTLRHSFATHLL    D+R IQ +LGH +L TT +Y  V +    D + E+
Sbjct: 228 IDKRVSMHTLRHSFATHLLEQKVDIRVIQVLLGHKKLETTALYAQVAT----DILREV 281


>gi|196230879|ref|ZP_03129740.1| integron integrase [Chthoniobacter flavus Ellin428]
 gi|196225220|gb|EDY19729.1| integron integrase [Chthoniobacter flavus Ellin428]
          Length = 353

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 66/314 (21%), Positives = 125/314 (39%), Gaps = 60/314 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           R  S  T ++Y    R+F++F A    +++           EI  F++    +  +   +
Sbjct: 51  RHYSLRTEEAYWMWVRRFILFHAKRHPKEMG--------APEITEFLTDLAVRHDVAPST 102

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++L+G+    K +  R          +   +++  +P  L  K+   L+         
Sbjct: 103 QMQALNGLVFLYKQVLGRDPGE---FAGLVRAQRTRKVPVVLAVKEMRRLLME------- 152

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
               ++     +  LLYG GLR+ E + L  +++   +  L +Q  KG + R+  L  + 
Sbjct: 153 ----LEGTALLMAQLLYGAGLRMIECVRLRVKDVDFARGVLTLQETKGGQGRVTMLPETA 208

Query: 207 RKAILE------------------------------------YYDLCPFDLNLNIQLPLF 230
           R+ +                                      ++    F   +  + P  
Sbjct: 209 REGLKRQLAKARALHEADRAAGANGVILPHALGEKLRHAATAWHWFWVFPSPVESRDPRS 268

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +R   ++    QR ++      G+    T H LRHSFATHLL  G D+R++Q +LGH 
Sbjct: 269 DVVRRHHVHEDSLQRALKAAASRAGIAKPVTPHVLRHSFATHLLEKGQDIRTVQELLGHK 328

Query: 291 RLSTTQIYTNVNSK 304
            ++TT IYT+V ++
Sbjct: 329 DVATTMIYTHVLNR 342


>gi|320333377|ref|YP_004170088.1| integrase family protein [Deinococcus maricopensis DSM 21211]
 gi|319754666|gb|ADV66423.1| integrase family protein [Deinococcus maricopensis DSM 21211]
          Length = 297

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 61/302 (20%), Positives = 126/302 (41%), Gaps = 17/302 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q++  +L+++R  SK TL  Y+   R    FL     E  T      L+ +++R F+   
Sbjct: 8   QHFAYHLKVKRR-SKNTLNFYDVTRRTLARFLEEQGVEATT----DTLTVSQLRGFLVWL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q +G   +      +++   + ++ ++ + +    +      +    A+  ++   L+
Sbjct: 63  EEQGLGPGGIHAHARALRALFNWAEREELVSRNLASRLELPSLPHERQPAITSERLWKLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                    +      R++A+L  L+  G+R+ E + L  ++++ ++  +R+ GKG+K R
Sbjct: 123 GAC------KGAGQQLRDTAMLLTLFDTGVRVHELIGLKVEDLLFERGLIRVVGKGNKER 176

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            VP+      A   Y        +  + L +F    G+ +        + +L +  G+  
Sbjct: 177 FVPIGSKAMSATSAYLRRERKQQHPGV-LHVFLSRSGEAMTRSGVSIRLAKLAKNTGIER 235

Query: 259 ST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H  R  FA   L NGGD+ ++Q I+GH  L  T+ Y         D +   + + 
Sbjct: 236 EVCAPHAFRRGFAVEFLRNGGDVFTLQQIMGHSSLDMTRRYVTFLD----DDLKAAHLRF 291

Query: 318 HP 319
            P
Sbjct: 292 SP 293


>gi|208972754|gb|ACI32876.1| IntI2 [Escherichia coli]
          Length = 325

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 76/328 (23%), Positives = 132/328 (40%), Gaps = 64/328 (19%)

Query: 21  WLQNLEI---ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +L ++     ++G +  T ++Y    ++F++F      + +           E+R F+S 
Sbjct: 6   FLNSIRTDMRQKGYALKTEKTYLHWIKRFILFHKKRHPQTMG--------SEEVRLFLSS 57

Query: 78  R-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              ++ +   + K +L+ +        ++ +     I       K   LP  ++  +   
Sbjct: 58  LANSRHVAINTQKIALNALAFLYNRFLQQPLGDIDYI----PASKPRRLPSVISANEVQR 113

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGD 195
           ++  +           D RN  I  LLYG GLRI+E L L  ++   D   + +  GKG 
Sbjct: 114 ILQVM-----------DTRNQVIFALLYGAGLRINECLRLRVKDFDFDNGCITVHDGKGG 162

Query: 196 KIRIVPLLP---SVRKAILEYYDLCPFDLNLNIQLP---------------------LFR 231
           K R   L      V K ++E   L   D NL    P                     +F 
Sbjct: 163 KSRNSLLPTRLIPVIKQLIEQARLIQQDDNLQGVGPSLPFALDRKYPSAYRQAAWMFVFP 222

Query: 232 G-----------IRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGD 279
                       +    L+  V ++ ++   +  G+     T HT RHSFATHLL  G D
Sbjct: 223 SSTLCNHPYNGKLCRHHLHDSVARKALKAAVQKAGIVSKRVTCHTFRHSFATHLLQAGRD 282

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +R++Q +LGH  + TTQIYT+V  ++  
Sbjct: 283 IRTVQELLGHTDVKTTQIYTHVLGQHFA 310


>gi|229522964|ref|ZP_04412378.1| integron integrase IntI4 [Vibrio cholerae TM 11079-80]
 gi|229340181|gb|EEO05189.1| integron integrase IntI4 [Vibrio cholerae TM 11079-80]
          Length = 320

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 78/321 (24%), Positives = 134/321 (41%), Gaps = 61/321 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           R  +K T+++Y     +++ F        +  +        E+  F++    Q  +  ++
Sbjct: 16  RYYAKKTIEAYLHWITRYIHFHNKKHPNLMGDK--------EVEEFLTYLAVQGKVATKT 67

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
              +L+ +    K + K  ++ E   +  +  +    LP  L   +   L++        
Sbjct: 68  QSLALNSLSFLYKEILKTPLSLE---IRFQRSQLERKLPVVLTRDEIRRLLEI------- 117

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
               +D ++   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V L   +
Sbjct: 118 ----VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKEL 173

Query: 207 R-----------------------------KAILEYYDLCPFDLNLNIQLPLFR------ 231
                                          A+ E Y   P++   +   P F+      
Sbjct: 174 YPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPE 233

Query: 232 --GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
              +R   +N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH
Sbjct: 234 SDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGH 293

Query: 290 FRLSTTQIYTNVNSKNGGDWM 310
             + TTQIYT+V  +     +
Sbjct: 294 TDVKTTQIYTHVLDRGASGVL 314


>gi|206578539|ref|YP_002237615.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
 gi|206567597|gb|ACI09373.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
          Length = 338

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 71/316 (22%), Positives = 126/316 (39%), Gaps = 29/316 (9%)

Query: 14  LLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           L    + +L + L  ER LS  T +SY    R  L F +    +      +  LS   IR
Sbjct: 7   LSSWIRRFLLEYLIGERNLSVNTQKSYRDMLRLLLPFASEAAGKATDKLLVEDLSEGCIR 66

Query: 73  AFISKRRTQKI-GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPRA 128
            F+ +   ++     +  + L+GI+S  +++             ++++   K S +L   
Sbjct: 67  NFLIRLGDERYCSASTRNQRLAGIRSLARFIAMHAPEYTDWYGRLKSIPLRKSSTALISY 126

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD---- 184
           L + +   L     L           R+ A+L  LY  G R  E   +   ++  +    
Sbjct: 127 LEKDEMDAL-----LSAPDVDTAQGRRDHAVLLFLYNTGARADEVAHVKMGDLNMNIAAG 181

Query: 185 ---QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
               S++ I GKG+++R  PL P   + +           +   Q  LF   + +PL   
Sbjct: 182 HYNNSSVVIHGKGNRLRRCPLWPETARLLQ------LLGRDRLSQETLFVNRQNRPLTRF 235

Query: 242 VFQRYIRQLRRYLGL------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             +  + +                 + HT+RH+ ATHLL  G D+ +I++ LGH  L+TT
Sbjct: 236 GIRDVVVRNVAVAAASVPSLSQKRVSPHTIRHTTATHLLRAGVDINTIRAWLGHVSLATT 295

Query: 296 QIYTNVNSKNGGDWMM 311
            IY  V+ +     + 
Sbjct: 296 LIYAEVDIQMKIQALK 311


>gi|254465304|ref|ZP_05078715.1| phage integrase [Rhodobacterales bacterium Y4I]
 gi|206686212|gb|EDZ46694.1| phage integrase [Rhodobacterales bacterium Y4I]
          Length = 292

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 124/290 (42%), Gaps = 31/290 (10%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           ++++ I +GL     +S+    + F  FL          ++    +  ++RA+      +
Sbjct: 14  IEDMRI-KGLGDKCQKSHIRAIKDFAAFLR---------RSPDTATPDDLRAYQLHMTDR 63

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +   +    +  ++ F +    R         +M+   +   LP   + ++   L+   
Sbjct: 64  GVTPPTYNARIIALRFFFETTCGRGEMK----RHMQFRTQPRKLPVVFSAEEVAALLQV- 118

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV 200
                        +  A L + YG GLR SE  +L   +I  D+  + + QGKG K R V
Sbjct: 119 -------APGPGLKYRAALSISYGAGLRASEVCNLKVSDIDSDRMLIHVEQGKGRKDRKV 171

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLGLPL- 258
            L P +   + EY+           +  LF G  +  P++     R     +   G+   
Sbjct: 172 MLSPGLLNLLREYWREA------RPEGWLFPGKPKINPVSSRQLHRAFSSAKLIAGIKKP 225

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            +T HTLRHSFATHLL  G D+R IQ +LGH +L TT+ YT+V +K   D
Sbjct: 226 GSTLHTLRHSFATHLLEAGTDVRVIQVLLGHAKLETTERYTHVATKLIRD 275


>gi|225867105|ref|YP_002752483.1| site-specific recombinase, phage integrase family [Bacillus cereus
           03BB102]
 gi|225786133|gb|ACO26350.1| site-specific recombinase, phage integrase family [Bacillus cereus
           03BB102]
          Length = 322

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 60/290 (20%), Positives = 128/290 (44%), Gaps = 16/290 (5%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G  K T+  Y    R F+         ++ I  +  ++   ++ +I+K  ++ +   ++ 
Sbjct: 41  GFRKRTIDDYTKLFRYFM--------RELNIDRVEIITAKHVQMYINKLISRDLAPATVN 92

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             +S +KS  K L ++  T  +  ++   L+   +    LN  Q   L   V      +T
Sbjct: 93  IRISALKSIFKRLHEQGYTKSNPAIDFVKLRTDEAPIFTLNNNQIKRLFRVV-----DKT 147

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
            +   R+   + L+  CGLR++E   L   ++  D  T+ + G  +K R    +P  ++ 
Sbjct: 148 TYAGYRDYCAMLLMLHCGLRVNEVNQLEVNDLDFDNLTIMLSGAKNKNRKTRAVPMTKRV 207

Query: 210 ILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST--TAHTLR 266
             E   L     +   +   +F    G  ++  + ++ + +  ++ GL      + H+LR
Sbjct: 208 AEELRMLIEESRDYFEVTTNVFLTHDGNSIDNDLLRKRMYRYGQFAGLSKECRPSPHSLR 267

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           H+FAT+ L NGG + ++  I+GH  ++TT  Y  +N +   +   ++  +
Sbjct: 268 HTFATNFLRNGGSVNALMRIMGHADITTTMRYVRLNDEAVKEQYEKVAAK 317


>gi|298484756|ref|ZP_07002857.1| Site-specific recombinase, phage integrase family [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298160725|gb|EFI01745.1| Site-specific recombinase, phage integrase family [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 319

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 65/277 (23%), Positives = 115/277 (41%), Gaps = 24/277 (8%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T ++Y+ D   F  F+        +    RQ++ + + A+ +    + +   +++R L
Sbjct: 39  PRTRRAYQNDLTDFCSFIGL-----ASADDFRQVTRSHVLAWRADLEQRGLAGATIRRKL 93

Query: 93  SGIKSFLKYLKKRKITTE-SNILNMRNLKKSNSLPRALNEKQALTLVDNV---LLHTSHE 148
           + + S   +L         + +  ++  +         NE +   L D+    LL     
Sbjct: 94  AALASLFDHLLDNNAVAGGNPVHGVKRPRIET------NEGKTPALGDHQAKQLLEAPDT 147

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSV 206
                 R+ AIL +L   GLR  EA  LT  ++ + +    LR+ GKG KIR +PL P  
Sbjct: 148 ETLKGLRDRAILAVLLYHGLRREEAAQLTTGDLQERRGIKHLRVHGKGSKIRFLPLHPMA 207

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPL-STT 261
            + I  Y +            PLFR +RG      +        +    +  G+ +    
Sbjct: 208 AERIHAYLEQDVE--RDTAPGPLFRSLRGTTTGAGITANGIYTVVEAYAKKAGIVVEHLG 265

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            H LR + AT+ L +  D+  +Q  LGH  +STT++Y
Sbjct: 266 VHGLRATAATNALEHDADIAKVQMWLGHANISTTRLY 302


>gi|288870073|ref|ZP_06112814.2| integrase/recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
 gi|288868544|gb|EFD00843.1| integrase/recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
          Length = 376

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 62/286 (21%), Positives = 115/286 (40%), Gaps = 27/286 (9%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKRSL 92
            TL+ Y  +    L FL          + +  ++  ++R +    R +  I   +++  L
Sbjct: 109 NTLKQYTREICNMLDFLG---------KRLEDITGMDLRYYYGVMRERRGIKMSTMQTRL 159

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             + SF  ++    + + + +  +  LK   ++ +  +  +   L           T   
Sbjct: 160 HYLSSFWDFMITEDLVSSNPVKKVGLLKIEKTIKKPFSAAEMEAL----------RTSCS 209

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           + R+ A++  LY  G+R+SE +SL   +I   +  L + GKG K R   L    +  +  
Sbjct: 210 ELRDRALVEFLYSTGVRVSELVSLNVGDIEMGKQELIVYGKGSKERKTYLTDGAKFYLRR 269

Query: 213 YYDLCPFDLNLNIQL----PLF--RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           Y      +  + ++     PLF         L     Q  +RQL R  G+      H  R
Sbjct: 270 YLRTRCENEGMTMEELQGRPLFATLDRPHGRLTVAGVQYMLRQLGRRAGVE-GVHPHRFR 328

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            + AT LLS G  +  ++  LGH +L TT IY  V +++      +
Sbjct: 329 RTIATDLLSRGMPIEQVKEFLGHEKLDTTMIYCTVKTESVQASHRK 374


>gi|330900232|gb|EGH31651.1| Phage integrase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 320

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 67/277 (24%), Positives = 125/277 (45%), Gaps = 23/277 (8%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T ++Y+ D   F  F+   + ++      R ++ + + A+ ++   + +   +++R L
Sbjct: 39  PRTRRAYQNDLEDFCGFVGLASADE-----FRVVTRSHVLAWRAQLEHRGLAGATIRRKL 93

Query: 93  SGIKSFLKYLKKRKITTE-SNILNMRNLKKSNSLPRALNEKQALTLVDNV---LLHTSHE 148
           + + S   +L +       + +  ++  K  +      NE +   L D+    LL    E
Sbjct: 94  AALASLFDHLLESNAIAGGNPVHGVKRPKIES------NEGKTPALGDHQAKALLEAPDE 147

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSV 206
           T     R+ A+L +L   GLR  EA  L   +I D +    L++ GKG K+R +PL P  
Sbjct: 148 TTLKGLRDRALLAVLLYHGLRREEAALLQVSDIQDRRGIQHLKVHGKGGKVRYLPLHPVA 207

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPL-STT 261
              I +Y +     L  + ++PLF  +RGK     +        +    +  G+ +    
Sbjct: 208 AGRIHQYLESSEHHL-TDRKVPLFIPLRGKLTGAGITANGIYTVVAAYAKMAGIEVAGLG 266

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            H LR + AT+ L +  D+  +Q+ LGH  +STT+IY
Sbjct: 267 VHGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303


>gi|229002464|ref|ZP_04160553.1| Integrase/recombinase [Bacillus mycoides Rock3-17]
 gi|228758597|gb|EEM07731.1| Integrase/recombinase [Bacillus mycoides Rock3-17]
          Length = 304

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 64/312 (20%), Positives = 133/312 (42%), Gaps = 23/312 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +L + + +L    I++G S+ T+ SY  D + F   +    +  +    I++ +    R 
Sbjct: 1   MLHKYRKYL----IDKGKSQNTVLSYINDLQIFFQEMRLNPDSYVISNDIKKWT----RN 52

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS---LPRALN 130
            ++ R  + +   ++ R L+ ++S+  + ++ +    + + ++++LK ++        L 
Sbjct: 53  MLNPREGKTLSVSTINRRLNTLRSYFSWAEREQYIKVNPMRDIKDLKVADEEYEKIMWLT 112

Query: 131 EKQALTLVDNVLLHTSHET----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           EK+   L+D +  +         +    R+ AI+Y+L   GLR+ E  SL   +I  D  
Sbjct: 113 EKEFEALLDRMRKYPVKTRGVNPEEKYRRDRAIIYILTYAGLRVEELSSLKITDIDIDFK 172

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN----LNIQLPLFRGIRGKPLNPGV 242
            +R+ GKG K+R VP+   +   +L++             +N    +F   R +  +   
Sbjct: 173 KIRVIGKGTKVRTVPMSNFLYNEVLDWLQFRNKIAKDKEIVNQSPYVFYSQRSEKFSIRG 232

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIYTNV 301
            Q  I             T H  RH+F   +L     D+  ++ + GH  +STT  Y   
Sbjct: 233 IQAMIENYSTS---DKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSHISTTTRYLKN 289

Query: 302 NSKNGGDWMMEI 313
           +     D +  +
Sbjct: 290 SFDELTDAVEAM 301


>gi|298249905|ref|ZP_06973709.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297547909|gb|EFH81776.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 369

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 66/281 (23%), Positives = 114/281 (40%), Gaps = 18/281 (6%)

Query: 52  FYTEEKITIQTIRQLSYTEIRAFISKRRT------QKIGDRSLKRSLSGIKSFLKYLKKR 105
            Y +E +    + ++   +I  ++S  R       +    RS++     +  F K+L   
Sbjct: 67  RYMKETLNRVYLEEIEEVDIILWLSHLREATSKFGRPYSSRSIQTYYRDVVVFFKWLVAH 126

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH------TSHETKWIDARNSAI 159
           K   E+   N++ +K   +L R   E + + L             T  E K + +R+ A 
Sbjct: 127 KHLKENPAENLKPVKTEKALIRVFTEDELVRLDAACDRAPKGKSLTPDERKALSSRDRAF 186

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           L+LL   G+R+SEA  L   +I  D   + ++GKG K R +P     R+ +  Y      
Sbjct: 187 LWLLLSTGIRVSEACGLLFGDIEWDMGMIYVRGKGAKERKIPFGKIARQHLDTYI-RYWR 245

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGG 278
               N    +F    G PL     +    +L++  G+     + HT RH FA + + NG 
Sbjct: 246 GGTTNHDEYVFLNAWGAPLRRSAAECIFTRLKKIAGIDDKRVSPHTCRHWFAVNAIKNGV 305

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
               +Q  LGH  L     Y  +  ++  D    +Y +  P
Sbjct: 306 PSTVLQGWLGHETLEMINTYVRLAEQDNRD----LYVRFSP 342


>gi|302349105|ref|YP_003816743.1| Tyrosine recombinase XerC/XerD [Acidilobus saccharovorans 345-15]
 gi|302329517|gb|ADL19712.1| Tyrosine recombinase XerC/XerD [Acidilobus saccharovorans 345-15]
          Length = 324

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 73/318 (22%), Positives = 134/318 (42%), Gaps = 47/318 (14%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           PE++S  +    +++L  LE   G SKLTL+SY    + F   +          + + QL
Sbjct: 11  PEVLSKSVADAVESFLSALEAS-GASKLTLKSYRAALQSFASHVG-------PSRPVSQL 62

Query: 67  SYTEIRAFISKRRTQK-IGDR------SLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           S  +  +++S+ R++  +G R      ++      ++ FL++L    +  E         
Sbjct: 63  SQADYLSWLSEMRSKGPVGPRGGRWSSTVHYYTIFVRRFLQWLGISGLPAE--------P 114

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           ++ +    AL+ K+   ++          +K  D  +  IL L+   GLR  E ++LT  
Sbjct: 115 QRRSEFSGALSWKEVEAMM----------SKARDLYDLLILSLMAESGLRAREVVNLTWG 164

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           +I   +   R++GK  K R+V L    R  +             ++  P     R   L+
Sbjct: 165 DIDLAKGEARVRGKYGKERLVVLGQVARSVL-------------SVLPPGGPNERVVKLS 211

Query: 240 PGVFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                  ++ L R  G+ +     H LRH+FAT  L  G  L  +Q +LGH  +  TQ+Y
Sbjct: 212 YQAIYDRVKSLARRAGIDVSKVRPHVLRHTFATEALRRGMSLPVLQRLLGHSDIRITQVY 271

Query: 299 TNVNSKNGGDWMMEIYDQ 316
            ++  ++        + Q
Sbjct: 272 LHLLDEDVRREYERAFMQ 289


>gi|239627800|ref|ZP_04670831.1| phage integrase [Clostridiales bacterium 1_7_47_FAA]
 gi|239517946|gb|EEQ57812.1| phage integrase [Clostridiales bacterium 1_7_47FAA]
          Length = 331

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 63/303 (20%), Positives = 119/303 (39%), Gaps = 27/303 (8%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
             E   ++  +  E   S  T+  Y+      LI++    +E      +  L+Y      
Sbjct: 53  FPELDIFIGKIRFE-NYSVSTVNQYQRFLTDLLIYVGKPVQEIAGEDVVECLNY------ 105

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
               + +KI   +         SF  +L +R   +++ +  +  +K    +  AL  ++ 
Sbjct: 106 --YEQARKISSSTKDHKRRIASSFFTFLHERGYISKNPMSTVDPIKYVAEIREALTSREV 163

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L               + R++A+L L    G R+SE +S+  +++       ++ GKG
Sbjct: 164 EKLRIAC---------GTNIRDNAVLELFLASGCRVSEVVSMRVEDMDLQAGCGKVLGKG 214

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K R+V       + +  Y          +  + L +    + L     +  IR++ +  
Sbjct: 215 KKERMVFFNDRAMEYLERYLGDR-----RSGAVILSKRAPYQGLKKNALENIIRKIAKKA 269

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           GL      H LRH+FAT  L+ G  L ++  ++GH  + TT+IY     KNG   +   Y
Sbjct: 270 GLGKRVFPHLLRHTFATRALNKGMPLPTLCDLMGHSSVETTRIYA----KNGAGKIRYEY 325

Query: 315 DQT 317
           D  
Sbjct: 326 DMY 328


>gi|218442353|ref|YP_002380677.1| integrase family protein [Cyanothece sp. PCC 7424]
 gi|218175457|gb|ACK74184.1| integrase family protein [Cyanothece sp. PCC 7424]
          Length = 273

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 68/285 (23%), Positives = 133/285 (46%), Gaps = 32/285 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G SK T+ SY+C  +QFL F+          + +R ++  ++  ++++         ++ 
Sbjct: 20  GKSKTTIISYQCHIKQFLEFVG---------KPLRDVTLDDLSLWVNRL-NLTYQPVTVA 69

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-PRALNEKQALTLVDNVLLHTSHE 148
             +  +KS   +  +    T +    +++ K  ++L  R L + +   L++         
Sbjct: 70  NKILTVKSLFSFACRVGYLTVNVGSFIKSPKLKDTLAERILEKAEVKRLINAT------- 122

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
               + R+S +L L+YGCGLR+SE   L   ++ + ++T  + GKG K R+V + P++  
Sbjct: 123 ---PNERDSVLLSLMYGCGLRVSEVCGLNWSDLRNGKAT--VFGKGAKTRVVIIPPNLWD 177

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            +++                +F   RG  L      + I++     G+    ++H LRHS
Sbjct: 178 RLMQL---------PRDGEAVFMSRRGNRLERTYIHKMIKECCHKSGVSEKASSHWLRHS 228

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            A+H +  G +LR +Q  LGH +L TT+ Y ++N   G    ++I
Sbjct: 229 HASHAVEAGCNLRLLQQSLGHSKLETTEKYLHINPDEGSSQFIDI 273


>gi|146297605|ref|YP_001181376.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145411181|gb|ABP68185.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 286

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 72/306 (23%), Positives = 141/306 (46%), Gaps = 24/306 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +LKE + +L+     +  ++ T++SY  D   F+ +    T ++   + + +    E ++
Sbjct: 1   MLKEFEEYLKT----QDFTENTIKSYTKDVELFMRWYVDTTGQEFLPENLTEFDLVEYKS 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--PRALNE 131
           ++ +   +     ++ RS+  ++ F+ +L  R +  +     ++ +K +     P  L++
Sbjct: 57  YLLR---KNHKPSTVNRSIISLRKFVHFLLDRGLLNKDISTRLKQVKDTTRNLSPVVLDK 113

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLR 189
           K        V        ++   R+ A++ LL   G+RISEA++L  ++  I + +  ++
Sbjct: 114 KDIYKFRRTV-------HQFGKTRDVALVELLLNTGMRISEAINLKLEDVEISERKGKVK 166

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           I GKG   R VPL    RK + EY    P+    +    LF    GK L      + I++
Sbjct: 167 IWGKGRSYREVPLNSDARKYLSEYLKKRPY----SETNYLFVTSTGKKLTRNSAYKIIQK 222

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +  GL      H LRH FA  L+  G ++  +Q +LGH R+ TT  Y   N+K   + 
Sbjct: 223 YAKLAGL--CLHPHMLRHFFAQTLIDKGLNIYDVQQLLGHQRIETTLRYKKPNTKLQEEM 280

Query: 310 MMEIYD 315
           +  + +
Sbjct: 281 VENLLE 286


>gi|119473240|ref|ZP_01614917.1| putative integrase [Alteromonadales bacterium TW-7]
 gi|119444534|gb|EAW25851.1| putative integrase [Alteromonadales bacterium TW-7]
          Length = 323

 Score =  166 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 77/332 (23%), Positives = 135/332 (40%), Gaps = 64/332 (19%)

Query: 15  LKERQNWLQNLE---IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           +K R  +L  +    + R  S  T+ +Y      F+ F                +  +E+
Sbjct: 1   MKTRSAYLNYIADYMLTRQYSLRTINAYLSWIANFIHFHNKRHP--------SSMGDSEV 52

Query: 72  RAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
            AF+      + +  ++   +L+ +    K++ K +++     LN    K+   LP  + 
Sbjct: 53  EAFLDHIVLKRNMSAKTQCAALNALAFLYKHIVKNELSLN---LNFARSKRQPKLPVVMT 109

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             +   L+ +           +  R   I+ L+YG GLR+ EA+ L  ++I  D   ++I
Sbjct: 110 PDEVKQLMVH-----------LSKRYYLIVGLMYGSGLRVMEAVQLRVKDIDFDYKCIQI 158

Query: 191 -QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ----------------------- 226
             GKG+K RIV L   +   +          L L++Q                       
Sbjct: 159 WNGKGNKHRIVTLATELLPLLRNQIMQVEEYLRLDLQNEQYAGVWMPNALARKYPSANKS 218

Query: 227 ---LPLFRG-----------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                LF             IR    +P   ++ +++  +   +    T HT RHSFATH
Sbjct: 219 LAWQYLFPSYKLSSDPETGEIRRHHFHPTCVRKAVKKALKQTNITKIVTPHTFRHSFATH 278

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           LL +G D+R++Q+ LGH  + TTQIYT+V  +
Sbjct: 279 LLQSGSDIRTVQAQLGHTDVKTTQIYTHVLQQ 310


>gi|15601056|ref|NP_232687.1| site-specific recombinase IntI4 [Vibrio cholerae O1 biovar eltor
           str. N16961]
 gi|121730170|ref|ZP_01682564.1| site-specific recombinase IntI4 [Vibrio cholerae V52]
 gi|147671698|ref|YP_001215774.1| site-specific recombinase IntI4 [Vibrio cholerae O395]
 gi|153803265|ref|ZP_01957851.1| site-specific recombinase IntI4 [Vibrio cholerae MZO-3]
 gi|153817564|ref|ZP_01970231.1| site-specific recombinase IntI4 [Vibrio cholerae NCTC 8457]
 gi|153824064|ref|ZP_01976731.1| site-specific recombinase IntI4 [Vibrio cholerae B33]
 gi|227811914|ref|YP_002811924.1| site-specific recombinase IntI4 [Vibrio cholerae M66-2]
 gi|229506555|ref|ZP_04396064.1| integron integrase IntI4 [Vibrio cholerae BX 330286]
 gi|229510649|ref|ZP_04400129.1| integron integrase IntI4 [Vibrio cholerae B33]
 gi|229514763|ref|ZP_04404224.1| integron integrase IntI4 [Vibrio cholerae TMA 21]
 gi|229517220|ref|ZP_04406665.1| integron integrase IntI4 [Vibrio cholerae RC9]
 gi|229606034|ref|YP_002876738.1| integron integrase IntI4 [Vibrio cholerae MJ-1236]
 gi|254850510|ref|ZP_05239860.1| site-specific recombinase IntIA [Vibrio cholerae MO10]
 gi|255745910|ref|ZP_05419857.1| integron integrase IntI4 [Vibrio cholera CIRS 101]
 gi|262163533|ref|ZP_06031279.1| integron integrase IntI4 [Vibrio cholerae INDRE 91/1]
 gi|262168208|ref|ZP_06035906.1| integron integrase IntI4 [Vibrio cholerae RC27]
 gi|297579606|ref|ZP_06941533.1| site-specific recombinase IntI4 [Vibrio cholerae RC385]
 gi|298500137|ref|ZP_07009943.1| site-specific recombinase IntIA [Vibrio cholerae MAK 757]
 gi|5825613|gb|AAD53319.1|AF179591_1 site-specific recombinase IntI4 [Vibrio cholerae]
 gi|3095165|gb|AAC38424.1| site-specific recombinase IntIA [Vibrio cholerae]
 gi|9657688|gb|AAF96199.1| site-specific recombinase IntI4 [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121628089|gb|EAX60629.1| site-specific recombinase IntI4 [Vibrio cholerae V52]
 gi|124121205|gb|EAY39948.1| site-specific recombinase IntI4 [Vibrio cholerae MZO-3]
 gi|126511989|gb|EAZ74583.1| site-specific recombinase IntI4 [Vibrio cholerae NCTC 8457]
 gi|126518414|gb|EAZ75637.1| site-specific recombinase IntI4 [Vibrio cholerae B33]
 gi|146314081|gb|ABQ18621.1| site-specific recombinase IntI4 [Vibrio cholerae O395]
 gi|227011056|gb|ACP07267.1| site-specific recombinase IntI4 [Vibrio cholerae M66-2]
 gi|227014959|gb|ACP11168.1| site-specific recombinase IntI4 [Vibrio cholerae O395]
 gi|229345256|gb|EEO10229.1| integron integrase IntI4 [Vibrio cholerae RC9]
 gi|229348743|gb|EEO13701.1| integron integrase IntI4 [Vibrio cholerae TMA 21]
 gi|229353094|gb|EEO18034.1| integron integrase IntI4 [Vibrio cholerae B33]
 gi|229356906|gb|EEO21824.1| integron integrase IntI4 [Vibrio cholerae BX 330286]
 gi|229372520|gb|ACQ62942.1| integron integrase IntI4 [Vibrio cholerae MJ-1236]
 gi|254846215|gb|EET24629.1| site-specific recombinase IntIA [Vibrio cholerae MO10]
 gi|255735664|gb|EET91062.1| integron integrase IntI4 [Vibrio cholera CIRS 101]
 gi|262023451|gb|EEY42154.1| integron integrase IntI4 [Vibrio cholerae RC27]
 gi|262028100|gb|EEY46759.1| integron integrase IntI4 [Vibrio cholerae INDRE 91/1]
 gi|297535252|gb|EFH74086.1| site-specific recombinase IntI4 [Vibrio cholerae RC385]
 gi|297542118|gb|EFH78169.1| site-specific recombinase IntIA [Vibrio cholerae MAK 757]
 gi|327485489|gb|AEA79895.1| Integron integrase IntI4 [Vibrio cholerae LMA3894-4]
 gi|327485494|gb|AEA79900.1| Integron integrase IntI4 [Vibrio cholerae LMA3894-4]
          Length = 320

 Score =  166 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 78/321 (24%), Positives = 134/321 (41%), Gaps = 61/321 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           R  +K T+++Y     +++ F        +  +        E+  F++    Q  +  ++
Sbjct: 16  RYYAKKTIEAYLHWITRYIHFHNKKHPSLMGDK--------EVEEFLTYLAVQGKVATKT 67

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
              +L+ +    K + K  ++ E   +  +  +    LP  L   +   L++        
Sbjct: 68  QSLALNSLSFLYKEILKTPLSLE---IRFQRSQLERKLPVVLTRDEIRRLLEI------- 117

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
               +D ++   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V L   +
Sbjct: 118 ----VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKEL 173

Query: 207 R-----------------------------KAILEYYDLCPFDLNLNIQLPLFR------ 231
                                          A+ E Y   P++   +   P F+      
Sbjct: 174 YPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPE 233

Query: 232 --GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
              +R   +N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH
Sbjct: 234 SDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGH 293

Query: 290 FRLSTTQIYTNVNSKNGGDWM 310
             + TTQIYT+V  +     +
Sbjct: 294 TDVKTTQIYTHVLDRGASGVL 314


>gi|9971650|dbj|BAB12601.1| intI2 [Escherichia coli]
 gi|50262989|gb|AAT72891.1| IntI2 [Shigella sonnei]
 gi|296881202|gb|ADH82143.1| IntI2 [Klebsiella pneumoniae]
 gi|296881208|gb|ADH82148.1| IntI2 [Klebsiella pneumoniae]
 gi|296881214|gb|ADH82153.1| IntI2 [Escherichia coli]
          Length = 325

 Score =  166 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 75/328 (22%), Positives = 131/328 (39%), Gaps = 64/328 (19%)

Query: 21  WLQNLEI---ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +L ++     ++G +  T ++Y    ++F++F      + +           E+R F+S 
Sbjct: 6   FLNSIRTDMRQKGYALKTEKTYLHWIKRFILFHKKRHPQTMG--------SEEVRLFLSS 57

Query: 78  R-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              ++ +   + K +L+ +        ++ +     I       K   LP  ++  +   
Sbjct: 58  LANSRHVAINTQKIALNALAFLYNRFLQQPLGDIDYI----PASKPRRLPSVISANEVQR 113

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGD 195
           ++  +           D RN  I  LLYG GLRI+E L L  ++   D   + +  GKG 
Sbjct: 114 ILQVM-----------DTRNQVIFTLLYGAGLRINECLRLRVKDFDFDNGCITVHDGKGG 162

Query: 196 KIRIVPLLP---SVRKAILEYYDLCPFDLNLNIQLP---------------------LFR 231
           K R   L        K ++E   L   D NL    P                     +F 
Sbjct: 163 KSRNSLLPTRLIPAIKXLIEQARLIQQDDNLQGVGPSLPFALDHKYPSAYRQAAWMFVFP 222

Query: 232 G-----------IRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGD 279
                       +    L+  V ++ ++   +  G+     T HT RHSFATHLL  G D
Sbjct: 223 SSTLCNHPYNGKLCRHHLHDSVARKALKAAVQKAGIVSKRVTCHTFRHSFATHLLQAGRD 282

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +R++Q +LGH  + TTQIYT+V  ++  
Sbjct: 283 IRTVQELLGHNDVKTTQIYTHVLGQHFA 310


>gi|218442340|ref|YP_002380665.1| hypothetical protein PCC7424_5613 [Cyanothece sp. PCC 7424]
 gi|218175444|gb|ACK74172.1| hypothetical protein PCC7424_5613 [Cyanothece sp. PCC 7424]
          Length = 273

 Score =  166 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 68/285 (23%), Positives = 128/285 (44%), Gaps = 32/285 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G SK T+ SY+C  +QFL F+          + +R ++  ++  ++++         ++ 
Sbjct: 20  GKSKTTVISYQCHVKQFLEFVG---------KPLRDVTLDDLSLWVNRL-NLTYQPVTVA 69

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-PRALNEKQALTLVDNVLLHTSHE 148
             +  +KS   +  +    T +    +++ K  ++L  R L+  +   L++         
Sbjct: 70  NKILTVKSLFSFACRVGYLTVNVGSFIKSPKLKDTLAERILDPSEVKRLINA-------- 121

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
               + R+S +L L+YGCGLR+SE   L   +         + GKG K RIV + P++  
Sbjct: 122 --APNERDSVLLSLMYGCGLRVSEVCGLNWSD--LKNGKATVFGKGAKTRIVIIPPNLWD 177

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            +++                +F   RG  L      + I++     G+    ++H LRHS
Sbjct: 178 RLMKL---------PRDGEAVFMSRRGNRLERTYIHKMIKECCHLSGVSEKASSHWLRHS 228

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            A+H +  G +LR +Q  LGH +L TT+ Y ++N   G    ++I
Sbjct: 229 HASHAVEAGCNLRLLQQSLGHSKLETTEKYLHINPDEGSSQFIDI 273


>gi|224543618|ref|ZP_03684157.1| hypothetical protein CATMIT_02828 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523444|gb|EEF92549.1| hypothetical protein CATMIT_02828 [Catenibacterium mitsuokai DSM
           15897]
          Length = 340

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 67/316 (21%), Positives = 131/316 (41%), Gaps = 31/316 (9%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+ +++ +I  +  ++    ++ + EIE G SK T Q Y+               E  T 
Sbjct: 49  MQEDSIQDIFEYSNMELIDKFIASKEIE-GCSKRTTQYYKSTLVML---------ENRTD 98

Query: 61  QTIRQLSYTEIRAFISKRRT----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
                ++   +R +++  +      K+   +++R+LS   SF  +L++     +S +  +
Sbjct: 99  IHFTHMTTDHLRTYLTDYQKINNCSKVSIDNIRRNLS---SFFSWLEEENYILKSPMKRI 155

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             +K    +   L+++    L D+            + R+ AI+ LL   G+R+ E +++
Sbjct: 156 HKIKTDKVIKETLSDESLECLRDSCD----------NLRDLAIIDLLASTGMRVGELVNI 205

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
             ++I  +     + GKG+K R V      +  +  Y      D   N  L +       
Sbjct: 206 NIEDIDFENRECVVFGKGNKERPVYFDARTKIHLKNYLKSRTDD---NPALFVSLDKPFN 262

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L     +  +R L R LG+      H  R + AT  +  G  +  +QS+LGH ++ TT 
Sbjct: 263 RLQISGVEIRLRNLGRRLGIHR-VHPHKFRRTVATRAIDKGMPIEQVQSLLGHSQIDTTM 321

Query: 297 IYTNVNSKNGGDWMME 312
            Y  VN  N  +   +
Sbjct: 322 HYAMVNQNNVKESHRK 337


>gi|308070088|ref|YP_003871693.1| integrase/recombinase y4qK [Paenibacillus polymyxa E681]
 gi|305859367|gb|ADM71155.1| Putative integrase/recombinase y4qK [Paenibacillus polymyxa E681]
          Length = 358

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 67/271 (24%), Positives = 118/271 (43%), Gaps = 32/271 (11%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           + R  S  T+++Y   T +F   L           T   ++   ++ +      + +   
Sbjct: 113 VARSYSSKTIKAYISQTERFFAGLQG---------TEASINDAVVQKYALVLLEKGLSHA 163

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
            + +++S +K + ++     +  +    +    KK + LP  L+  + + L+  V     
Sbjct: 164 YVNQAISALKFYFRH-----VLKQPKSADYVRPKKESKLPDVLSLNEVMHLLKAVK---- 214

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS 205
                 + ++ AILYL Y  GLR+SE + L  ++   ++  L+++ GKG K R   L  +
Sbjct: 215 ------NPKHKAILYLTYTSGLRVSEVVRLRLEDCDRERKVLKVRQGKGRKDRQTLLSEA 268

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHT 264
               + +Y  +            LF G R    L     Q+   +     G+    + H+
Sbjct: 269 AFAVVEQYRGV------EQPADWLFPGQREGRHLTERSAQKVFEKALAEAGIRKQVSIHS 322

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           LRHSFATHLL NG DLR IQ +LGH  + TT
Sbjct: 323 LRHSFATHLLENGIDLRYIQELLGHQSVRTT 353


>gi|320156126|ref|YP_004188505.1| integron integrase IntI4 [Vibrio vulnificus MO6-24/O]
 gi|326424001|ref|NP_761248.2| Integron integrase IntI4 [Vibrio vulnificus CMCP6]
 gi|319931438|gb|ADV86302.1| integron integrase IntI4 [Vibrio vulnificus MO6-24/O]
 gi|319999378|gb|AAO10775.2| Integron integrase IntI4 [Vibrio vulnificus CMCP6]
          Length = 320

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 78/327 (23%), Positives = 131/327 (40%), Gaps = 62/327 (18%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQ 81
            ++   R  +  T+Q+Y    +Q++ F          +     L+   +  F++     Q
Sbjct: 11  DHMRT-RHYATKTIQAYISWIKQYIYFHR--------MAHPSTLNEKHVEEFLTHLAVEQ 61

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
           K+  ++   +L+ +    +   +   T  +N +  +       LP  L + +    + + 
Sbjct: 62  KVAAKTQALALNSVLFLYREYFR---TPLNNEIKFQKSLLDRKLPVVLTKPELRAFIQH- 117

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV 200
                     ID R    + LLYG GLR+ E + L  Q++      LR+ QGKG K R V
Sbjct: 118 ----------IDPRYKLHIMLLYGSGLRVMECVRLRIQDVDYHYGALRVWQGKGGKNRTV 167

Query: 201 PLLPSVRKAILE-----------------------------YYDLCPFDLNLNIQLPLFR 231
            L   +   + E                              Y     D N +   P  R
Sbjct: 168 TLAKELYPLLKEQEALALRYYQKDRITAGYAGVWLSSSLQRKYQGAEMDFNWHYLFPSDR 227

Query: 232 G--------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                    +R   +N    QR +++  +  G+  S + HTLRHSFATHLL +G D+R++
Sbjct: 228 LSRDPESDLLRRHHINEQALQRAVKRAAKDAGITKSISCHTLRHSFATHLLESGADIRTV 287

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWM 310
           Q  LGH  + TTQIYT+V  +  G  +
Sbjct: 288 QEQLGHSDVKTTQIYTHVLERGAGGVL 314


>gi|254228151|ref|ZP_04921580.1| integron integrase subfamily [Vibrio sp. Ex25]
 gi|151939224|gb|EDN58053.1| integron integrase subfamily [Vibrio sp. Ex25]
          Length = 335

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 78/321 (24%), Positives = 130/321 (40%), Gaps = 61/321 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           R  +  T++SY    ++F+ F          +     L+  ++  F+S     +K+  ++
Sbjct: 31  RHYANKTIESYLFWIKRFITFHQ--------LAHPSTLAEDDVVQFLSYLAVKEKVAVKT 82

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
              +L+ I    +   K  ++ +   +  +       LP  L  ++    V +       
Sbjct: 83  QALALNSISFLYRDYFKTPLSLD---MRFQKSLTEKKLPVVLTREEIRRFVQH------- 132

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
               ID R    + LLYG GLR+ E L L  Q+I  D   +R+ QGKG K R V L   +
Sbjct: 133 ----IDPRYKLHIQLLYGSGLRVMECLRLRVQDIDYDYGAVRVWQGKGGKNRTVTLAKEL 188

Query: 207 RKAILEYYDLCPFDLNLNIQLP--------------------------LFRG-------- 232
            + +    +L       +  +P                          LF          
Sbjct: 189 HEPLKAQVNLARDYYFKDRHMPGYAGVYISEGLRRKYPKAELDFNWHFLFPSTKLSTDRD 248

Query: 233 ---IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
              +R   +N    QR +++      +  + T HTLRHSFATHLL +G D+R++Q  LGH
Sbjct: 249 TGELRRHHINESAIQRAVKRAATDACIEKTVTCHTLRHSFATHLLESGADIRTVQEQLGH 308

Query: 290 FRLSTTQIYTNVNSKNGGDWM 310
             + TTQIYT+V  +  G  +
Sbjct: 309 TDVKTTQIYTHVIERGAGGVL 329


>gi|149774736|gb|ABR28408.1| integrase [Delftia tsuruhatensis]
 gi|151500312|gb|ABS12091.1| integrase [Delftia acidovorans]
          Length = 346

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 71/329 (21%), Positives = 135/329 (41%), Gaps = 59/329 (17%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           S +LL + +  ++ L      S  T ++Y    + F+++ A         +  R++   E
Sbjct: 17  SIKLLDQVRERVRYL----HYSLQTEKAYVYWAKAFVLWTARSHG---GFRHPREMGQAE 69

Query: 71  IRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +  F++   T+K +   + +++L+ +    + +   ++     +  +    +   +P  L
Sbjct: 70  VEGFLTMLATEKQVAPATHRQALNALLFLYRQVLGMEL---PWMQQIGRPPERKRIPVVL 126

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
             ++  TL+ ++               + +  LLYG GLR+ EAL L  +++  D+  + 
Sbjct: 127 TVQEVQTLLSHM-----------AGTEALLAALLYGSGLRLREALGLRVKDVDFDRHAII 175

Query: 190 IQ-GKGDKIRIVPLLPSVRKAILE------------------------------------ 212
           ++ GKGDK R+V L  ++   +                                      
Sbjct: 176 VRSGKGDKDRVVMLPRALVPRLRAQLIQVRAVWGQDRATGRGGVYLPHALERKYPRAGES 235

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +     F        P     R   L      R +++     G+    + HTLRHSFATH
Sbjct: 236 WAWFWVFPSAKLSVDPQTGVERRHHLFEERLNRQLKKAVVQAGIAKHVSVHTLRHSFATH 295

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 296 LLQAGTDIRTVQELLGHSDVSTTMIYTHV 324


>gi|37680125|ref|NP_934734.1| super-integron integrase IntIA [Vibrio vulnificus YJ016]
 gi|37198871|dbj|BAC94705.1| super-integron integrase IntIA [Vibrio vulnificus YJ016]
          Length = 320

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 79/327 (24%), Positives = 131/327 (40%), Gaps = 62/327 (18%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQ 81
            ++   R  +  T+Q+Y    +Q++ F          +     L+   +  F++     Q
Sbjct: 11  DHMRT-RHYATKTIQAYISWIKQYIYFHR--------MAHPSTLNEKHVEEFLTHLAVEQ 61

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
           K+  ++   +L+ +    +   +   T  +N +  +       LP  L + +    + + 
Sbjct: 62  KVAAKTQALALNSVLFLYREYFR---TPLNNEIKFQKSLLDRKLPVVLTKPELRAFIQH- 117

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV 200
                     ID R    + LLYG GLR+ E + L  Q+I      LR+ QGKG K R V
Sbjct: 118 ----------IDPRYKLHIMLLYGSGLRVMECVRLRIQDIDYHYGALRVWQGKGGKNRTV 167

Query: 201 PLLPSVRKAILE-----------------------------YYDLCPFDLNLNIQLPLFR 231
            L   +   + E                              Y     D N +   P  R
Sbjct: 168 TLAKELYPLLKEQEALALRYYQKDRITAGYAGVWLSSSLQRKYQGAEMDFNWHYLFPSDR 227

Query: 232 G--------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                    +R   +N    QR +++  +  G+  S + HTLRHSFATHLL +G D+R++
Sbjct: 228 LSRDPESDLLRRHHINEQALQRAVKRAAKDAGITKSISCHTLRHSFATHLLESGADIRTV 287

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWM 310
           Q  LGH  + TTQIYT+V  +  G  +
Sbjct: 288 QEQLGHSDVKTTQIYTHVLERGAGGVL 314


>gi|119855366|ref|YP_935969.1| phage integrase family protein [Mycobacterium sp. KMS]
 gi|119867745|ref|YP_937697.1| phage integrase family protein [Mycobacterium sp. KMS]
 gi|119693834|gb|ABL90907.1| phage integrase family protein [Mycobacterium sp. KMS]
 gi|119698083|gb|ABL95154.1| phage integrase family protein [Mycobacterium sp. KMS]
          Length = 364

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 75/352 (21%), Positives = 133/352 (37%), Gaps = 74/352 (21%)

Query: 16  KERQNWLQNLE-IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
              + +L+ L  IER  S  T+++Y  D + +  FLA              +   ++ AF
Sbjct: 22  APIERYLRYLTDIER--SPNTIKAYAHDLKDWFTFLAGRGP------DWTAVQLEDVGAF 73

Query: 75  ISKRR----------------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTES------- 111
           +S  R                    G+ ++ R LS + +F  Y  +  +           
Sbjct: 74  VSWLRLPMALRQSGIVMLPTMEHHCGEATVNRKLSALAAFYTYAARDGVAVGELLTTWQV 133

Query: 112 --------NIL-----------NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
                     L            M  LK +  LPR L   +A  ++D+            
Sbjct: 134 GGSRGGWKPFLHHVSNRMPRSRRMVTLKTAKKLPRILTPVEAQAVLDSCDR--------- 184

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---------KGDKIRIVPLL 203
             R+  +L +LY  G+R+ EAL L   +I   +  + I+          K    R VP+ 
Sbjct: 185 -LRDRFLLAVLYDTGMRVGEALGLRHSDIAAAECEITIRRRDNDNGARAKSVSSRTVPVS 243

Query: 204 PSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           P + +   +Y      DL+ + + + L+    G P         +R+LRR  G+      
Sbjct: 244 PELIRLYADYLHDEYGDLDSDYVFVNLWGRPHGHPWTYAAVYDLVRRLRRRTGIDFD--P 301

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           H LRH+ AT +L +G  L  +  +LGH  ++TT   Y ++  ++    + + 
Sbjct: 302 HWLRHTAATRMLRDGIGLEVVAKLLGHANVTTTAATYGHLTVEDARKVLQQA 353


>gi|169826675|ref|YP_001696833.1| hypothetical protein Bsph_1093 [Lysinibacillus sphaericus C3-41]
 gi|168991163|gb|ACA38703.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 632

 Score =  165 bits (419), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 120/290 (41%), Gaps = 23/290 (7%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           V+ +  K    +L ++++E  LS  T+  Y     +F          K   +    L+  
Sbjct: 350 VNNDSRKIINEYLLSMKLE-NLSAGTIYQYRFFLNKFF---------KDKRENCLSLTPE 399

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           EIR +    + + +   ++K+ L+ + SF  +         S I      +KS S+P+ L
Sbjct: 400 EIRKYFIPLQ-KGLKAATIKKQLTILSSFYNFCVDEGYIHMSPIKKRWFPRKSKSIPKFL 458

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            +++   +            K    RN  ++ LL   G RISE   L   +I  +  T +
Sbjct: 459 EKEEIAKVRQLC-------EKRNQLRNRVMVELLLTSGCRISEVNMLNKSDIDLENRTAQ 511

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG KIR V    +    +         +  ++    LF   RG  L     Q+ + Q
Sbjct: 512 VLGKGKKIREVHFSETCAILLERLL-----ESYIDEHPALFISERGTRLGIRQMQKIVEQ 566

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           +     +  S   H  RH+FAT LL+ G DL  I   LGH +L TT+IY 
Sbjct: 567 VGIDAKIKSSLHPHRFRHTFATELLTKGADLSFIADELGHKQLQTTKIYA 616



 Score = 40.0 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 11/105 (10%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + + E  K    +L NL+  +  S  T++ Y    + +          K T      L  
Sbjct: 237 LPNIENRKTINEYLLNLKH-KNKSHRTIEEYRFILQAYF---------KDTDTHFTLLKN 286

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI 113
            + + +I   +  K  +++L   +S  +SF  +  ++K    S I
Sbjct: 287 YDFQNWIQSYKGVK-NEKTLDNYMSIFRSFYIFCVRKKYLERSPI 330



 Score = 39.2 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 16/147 (10%), Positives = 57/147 (38%), Gaps = 15/147 (10%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +++ E  +    +L +L + +  S+ T+       ++F            + +    ++ 
Sbjct: 10  LLNSENTEIINLFLLSL-VRKKRSQQTIIRQRSILQRFF---------GKSNKVYNCITL 59

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNS 124
            +I  ++  ++      R++   L+ ++ F  + +  +   ES + +    + +  +   
Sbjct: 60  EDITNWLLDQQM-GCNKRTISCYLATLRIFYFFCENERFIEESPLQDEETSVSHPSRYWE 118

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKW 151
           L   L   +   +++  L++  +  K 
Sbjct: 119 LKMILPNIENQNIINEFLVNLKNSGKR 145


>gi|269967891|ref|ZP_06181932.1| site-specific recombinase IntI [Vibrio alginolyticus 40B]
 gi|269827489|gb|EEZ81782.1| site-specific recombinase IntI [Vibrio alginolyticus 40B]
          Length = 320

 Score =  165 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 78/321 (24%), Positives = 130/321 (40%), Gaps = 61/321 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRS 87
           R  +  T++SY    ++F+ F          +     L+  ++  F+S     +K+  ++
Sbjct: 16  RHYANKTIESYLFWIKRFITFHQ--------LAHPSTLAEDDVIQFLSYLTVEEKVAVKT 67

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
              +L+ I    +   K  ++ +   +  +       LP  L  ++    V +       
Sbjct: 68  QALALNSISFLYRDYFKTPLSLD---MRFQKSLTEKKLPVVLTREEIRRFVQH------- 117

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
               ID R    + LLYG GLR+ E L L  Q+I  D   +R+ QGKG K R V L   +
Sbjct: 118 ----IDPRYRLHIQLLYGSGLRVMECLRLRVQDIDYDYGAVRVWQGKGGKNRTVTLAKEL 173

Query: 207 RKAILEYYDLCPFDLNLNIQLP--------------------------LFRG-------- 232
            + +    +L       +  +P                          LF          
Sbjct: 174 HEPLKAQVNLARNYYFKDRHMPGYAGVYISEGLRRKYPKAELDFNWHFLFPSTKLSADRD 233

Query: 233 ---IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
              +R   +N    QR +++      +  + T HTLRHSFATHLL +G D+R++Q  LGH
Sbjct: 234 TGELRRHHINESAIQRAVKRAASDASIEKTVTCHTLRHSFATHLLESGADIRTVQEQLGH 293

Query: 290 FRLSTTQIYTNVNSKNGGDWM 310
             + TTQIYT+V  +  G  +
Sbjct: 294 TDVKTTQIYTHVIERGAGGVL 314


>gi|56963097|ref|YP_174824.1| phage-related integrase/recombinase [Bacillus clausii KSM-K16]
 gi|56909336|dbj|BAD63863.1| phage-related integrase/recombinase [Bacillus clausii KSM-K16]
          Length = 321

 Score =  165 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 52/290 (17%), Positives = 128/290 (44%), Gaps = 15/290 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
             K  + +++++++ +  +  T+  Y+ + + F   L    E  + I+   +++   I  
Sbjct: 26  FEKAVELFIRDVKL-KNRADATVTFYKNELKGFKRTLK---EMNLPIEP-AKVTPFMIEE 80

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F      +     ++   L  +++   +L K+++  E+ + +++ LK         ++ Q
Sbjct: 81  FAFHMMEEGSKAGAVNARLRAVRALFNFLFKKRLIPENPVADLKLLKNIKGDIIPFSKDQ 140

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG- 192
              L      + +    +   RN  ++ ++   G+R+ E   +   +++ D +++ I+  
Sbjct: 141 LQRLF-----NQADRRTFTGLRNYVMMMVMLDTGVRVKELCQIDMVDVLWDDNSIVIRHP 195

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K   +R VP+     KA+ +Y +    ++  N    LF  +  K ++    Q ++ Q  +
Sbjct: 196 KNGYVRRVPISEETIKALEQYVNHRGQNIGNN---ALFVTLDDKRISKRQVQNFLSQYGK 252

Query: 253 YLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              +     + HT RH+FA   L  G ++  +Q ILGH  L   ++Y ++
Sbjct: 253 GASITDVRCSPHTFRHTFAKMALQGGANMFELQQILGHSSLEMVRVYVHL 302


>gi|254284963|ref|ZP_04959929.1| site-specific recombinase IntI4 [Vibrio cholerae AM-19226]
 gi|150424966|gb|EDN16743.1| site-specific recombinase IntI4 [Vibrio cholerae AM-19226]
          Length = 320

 Score =  165 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 78/321 (24%), Positives = 135/321 (42%), Gaps = 61/321 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           R  +K T+++Y     +++ F        +  +        E+  F++    Q  +  ++
Sbjct: 16  RYYAKKTIEAYLHWITRYIHFHNKKHPSLMGDK--------EVEEFLTYLAVQGKVATKT 67

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
              +L+ +    K + K  ++ E   ++ +  +    LP  L   +   L++        
Sbjct: 68  QSLALNSLSFLYKEILKTPLSLE---IHFQRSQLERKLPVVLTRDEIRRLLEI------- 117

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
               +D ++   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V L   +
Sbjct: 118 ----VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKEL 173

Query: 207 R-----------------------------KAILEYYDLCPFDLNLNIQLPLFR------ 231
                                          A+ E Y   P++   +   P F+      
Sbjct: 174 YPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPE 233

Query: 232 --GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
              +R   +N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH
Sbjct: 234 SDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGH 293

Query: 290 FRLSTTQIYTNVNSKNGGDWM 310
             + TTQIYT+V  +     +
Sbjct: 294 TDVKTTQIYTHVLDRGASGVL 314


>gi|210619629|ref|ZP_03292053.1| hypothetical protein CLONEX_04294 [Clostridium nexile DSM 1787]
 gi|210148832|gb|EEA79841.1| hypothetical protein CLONEX_04294 [Clostridium nexile DSM 1787]
          Length = 345

 Score =  165 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 64/343 (18%), Positives = 122/343 (35%), Gaps = 26/343 (7%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQ-NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
           M     P I     +K  + ++   +   RGLSK T+ SY+      + ++      K  
Sbjct: 1   MRKQKTPSI----FMKYLEYYVNTYMPEARGLSKNTINSYKTTFTLLIKYMYSVKNTKAD 56

Query: 60  IQTIRQLSYTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTES----NIL 114
             T   L    +  F+S     +K    +  + L+ + SF +Y +       S     +L
Sbjct: 57  EITFDCLDVNTLSDFMSWLENERKCSVTTRNQRLAALYSFSEYAQNYDFDAASTFRSAVL 116

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            + + K            +       +LL    +      R+  +L  +Y  G R  E  
Sbjct: 117 RIPSKKAPKKRRVGFTTDEVK-----ILLALPDQKSETGLRDMVLLSFMYATGTRAQEVC 171

Query: 175 SLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
            LT +++      +T+ I GKG K R + +       + +Y       +       +F  
Sbjct: 172 DLTVKSVNFRSTGTTIDIVGKGSKARRIRIPDPCASMLRKYI--RHRRIETEPDRHIFSS 229

Query: 233 IRGKPLNPGVFQRYIRQLRRYLG-------LPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
              + +     +   ++  +               + H++RH+   H+L  G  +  I++
Sbjct: 230 QTHEHMTISCVEEIYKKYIKLAKEKTPNLFKEEHYSPHSMRHTTGQHMLEAGVPIMVIKA 289

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
            LGH  + TTQIYT          + E  +   P     D+K+
Sbjct: 290 FLGHASVQTTQIYTESPQATVDKHIREWNEMNFPRSIYIDEKD 332


>gi|71725244|ref|YP_272203.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71558834|gb|AAZ38044.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 320

 Score =  165 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 126/290 (43%), Gaps = 28/290 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            W  NL+  R     T ++Y+ D   F  F+        +    RQ++ + + A+ +   
Sbjct: 31  EWFANLDNRR-----TRRAYQNDLTDFSSFIGL-----ASADDFRQVTRSHVLAWRADLE 80

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTE-SNILNMRNLKKSNSLPRALNEKQALTLV 138
            + +   +++R L+ + S   +L         + +  ++  +  +      NE +   L 
Sbjct: 81  QRGLAGATIRRKLAALASLFDHLLDNNAVAGGNPVHGVKRPRIES------NEGKTPALG 134

Query: 139 DNV---LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGK 193
           D+    LL    E+     R+ A+L +L   GLR  EA  L   +I + +    L+I GK
Sbjct: 135 DHQAKALLEAPDESTLKGRRDRAMLAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGK 194

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQ 249
           G K+R +PL P     I  Y +     L  + ++PLF  +RGK     ++       +  
Sbjct: 195 GGKVRYLPLHPVAAGRIHLYLERSEHHL-ADRKVPLFISLRGKSTGAGVSANGIYTVVEA 253

Query: 250 LRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             +  G+ +     H LR + AT+ L +  D+  +Q  LGH  +STT+IY
Sbjct: 254 YAKKAGIEVAGLGVHGLRATAATNALEHEADIAKVQVWLGHANISTTRIY 303


>gi|153827714|ref|ZP_01980381.1| chain A, Structural Basis For Broad Dna-Specificity In Integron
           Recombination [Vibrio cholerae MZO-2]
 gi|149737809|gb|EDM52714.1| chain A, Structural Basis For Broad Dna-Specificity In Integron
           Recombination [Vibrio cholerae MZO-2]
          Length = 314

 Score =  165 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 78/321 (24%), Positives = 135/321 (42%), Gaps = 61/321 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           R  +K T+++Y     +++ F        +  +        E+  F++    Q  +  ++
Sbjct: 10  RYYAKKTIEAYLHWITRYIHFHNKKHPSLMGDK--------EVEEFLTYLAVQGKVATKT 61

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
              +L+ +    K + K  ++ E   ++ +  +    LP  L   +   L++        
Sbjct: 62  QSLALNSLSFLYKEILKTPLSLE---IHFQRSQLERKLPVVLTRDEIRRLLEI------- 111

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
               +D ++   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V L   +
Sbjct: 112 ----VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKEL 167

Query: 207 R-----------------------------KAILEYYDLCPFDLNLNIQLPLFR------ 231
                                          A+ E Y   P++   +   P F+      
Sbjct: 168 YPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPE 227

Query: 232 --GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
              +R   +N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH
Sbjct: 228 SDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGH 287

Query: 290 FRLSTTQIYTNVNSKNGGDWM 310
             + TTQIYT+V  +     +
Sbjct: 288 TDVKTTQIYTHVLDRGASGVL 308


>gi|309807963|ref|ZP_07701891.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
 gi|308168814|gb|EFO70904.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
          Length = 166

 Score =  165 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 3/166 (1%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           +++    T  +  R+ AIL  LY  G+R+SE ++L   +I ++   +++ GKG K R++P
Sbjct: 1   MINMPDTTTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIP 60

Query: 202 LLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +       I +Y           +   +  +F   RG  +      + I++  +  G+  
Sbjct: 61  ISNVAMSWIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLAGINK 120

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + T HTLRH+FATHLL NG DLR +Q ILGH  +STTQIYTN+  K
Sbjct: 121 NVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQK 166


>gi|228969782|ref|ZP_04130546.1| Integrase/recombinase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228789934|gb|EEM37752.1| Integrase/recombinase [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 304

 Score =  165 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 62/312 (19%), Positives = 131/312 (41%), Gaps = 23/312 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +L + +N+L    I++G S+ T+ SY  D + F   +    +  +    I++ +    R 
Sbjct: 1   MLHKYRNYL----IDKGKSRNTVISYINDLQVFFQEMGVNPDSYVISNDIKKWT----RD 52

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK---KSNSLPRALN 130
            ++ ++ + +   ++ R L+ ++S+  + ++      + + ++++LK   + +     L 
Sbjct: 53  MLNPKKGKALSVSTINRRLNTLRSYFSWAERENYIRVNPMTDIKDLKMVDEEHEKIMWLT 112

Query: 131 EKQALTLVDNVLLHTSHET----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           EK+   L++ +  +         +    R+  I+Y+L   GLR+ E  +L   +I  D  
Sbjct: 113 EKEFEELLERMRKYPIKTRGVNAEEKYRRDRVIIYILTYAGLRVEELSNLKITDIDLDVK 172

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI----QLPLFRGIRGKPLNPGV 242
            +R+ GKG+K+R +P+   +   ILE+        N          L    R    +   
Sbjct: 173 KIRVVGKGNKVRTIPMSNFLYNEILEWLQFRSKVSNEKEIVSHSPFLLYSQRSGKFSIRG 232

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIYTNV 301
            Q  I             T H  RH+F   +L     D+  ++ + GH  +STT  Y   
Sbjct: 233 IQNMIENYST---PDKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSHISTTTRYLKS 289

Query: 302 NSKNGGDWMMEI 313
           +     D +  +
Sbjct: 290 SYDELTDAVESM 301


>gi|15643727|ref|NP_228775.1| integrase-recombinase protein [Thermotoga maritima MSB8]
 gi|222100583|ref|YP_002535151.1| Integrase-recombinase protein [Thermotoga neapolitana DSM 4359]
 gi|4981505|gb|AAD36046.1|AE001759_10 integrase-recombinase protein [Thermotoga maritima MSB8]
 gi|221572973|gb|ACM23785.1| Integrase-recombinase protein [Thermotoga neapolitana DSM 4359]
          Length = 253

 Score =  165 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 125/288 (43%), Gaps = 46/288 (15%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
             +L+ L++ +  S+ TL  Y    R+F  F      E IT +T ++        +++  
Sbjct: 2   DEYLEYLKVVKKRSERTLYQYRSILREFTRF------EPITPETWKE--------YLNT- 46

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALTL 137
              K    + +  L  +K++L +   R +   E    N     +   LP+A+   +   +
Sbjct: 47  -ISKNAPATQRNKLVVVKNYLNWRADRGLLNAEERFWNEAEPPRHTVLPKAIELDEVRRI 105

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQGKGDK 196
           ++             +    AI  +L   G+R+SE ++L+  +I  ++ + +RI+GKG+K
Sbjct: 106 IEACD----------NPLYRAIFKVLANTGMRVSEIVNLSVHDISVNETARIRIKGKGNK 155

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            RI+ +   + + ++                    G   K  +    QR +++  R  G+
Sbjct: 156 ERIINVSKELVEELMN------------------SGFFEKKPSVRSIQRAVKRYARKAGI 197

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
               T H  RHSFA  L+  G  L  IQ++LGH  +STT IY  + S+
Sbjct: 198 KKKVTPHIFRHSFAVALIERGVPLNKIQALLGHANISTTSIYLKIASE 245


>gi|332140068|ref|YP_004425806.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype']
 gi|332143134|ref|YP_004428872.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550090|gb|AEA96808.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327553156|gb|AEA99874.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 322

 Score =  165 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 73/321 (22%), Positives = 131/321 (40%), Gaps = 62/321 (19%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-Q 81
           +++ ++R  +K T+Q+Y      ++ F  F        Q  + L    + A+++   T +
Sbjct: 11  EHMMLKR-YAKRTIQTYINWISDYIRFHKF--------QHPKDLDVLHVEAYLTHLSTKR 61

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
           K    +   +L+ +        ++ + ++ N +      +   LP  L + +   L+   
Sbjct: 62  KNARSTQATALNALVFLYNKYLEQPLPSDMNFVGSG---RERKLPVVLTQLEVKALL--- 115

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV 200
                     +   +   + LLYG GLR+ E + L   +I  D   +RI  GKG K R+V
Sbjct: 116 --------GRVPTHHYLAVALLYGSGLRLMECVRLRTGDIDFDYKCVRIWFGKGGKHRVV 167

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG---------------------------- 232
            L  S+   +  +       L  ++ +P F G                            
Sbjct: 168 TLSESLIPLLKNHISESEKLLQRDLMVPDFAGAWIPHGLRKKYQQRNKTLEWQYLFPASK 227

Query: 233 ---------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                    +R   ++    QR + +     G+    T HTLRHSFATHLL +G D+R++
Sbjct: 228 LSIDPESKLLRRHHIDEKQIQRAVSRASSDAGIIKHVTPHTLRHSFATHLLQSGADIRTV 287

Query: 284 QSILGHFRLSTTQIYTNVNSK 304
           Q  LGH  + TTQIYT++  +
Sbjct: 288 QDQLGHADVRTTQIYTHILQQ 308


>gi|149908948|ref|ZP_01897607.1| site-specific recombinase, phage integrase family [Moritella sp.
           PE36]
 gi|149807959|gb|EDM67902.1| site-specific recombinase, phage integrase family [Moritella sp.
           PE36]
          Length = 288

 Score =  165 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 64/296 (21%), Positives = 127/296 (42%), Gaps = 36/296 (12%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +  Q + + + + RG S+ T  SY     Q   +           Q +  +S  ++  
Sbjct: 1   MRQLLQQFNEEITL-RGYSERTRNSYRYAINQLYKYFG---------QPLDTISDKQLEM 50

Query: 74  FISKRRTQKIG-DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +      +K     +LK  L+GI    +++  R        +++   K+   LP+ L ++
Sbjct: 51  YFRYLNLEKHHCRATLKLHLNGIHFLFEHVLHRSF-----TISVCLPKRKEKLPQLLTQQ 105

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-Q 191
               ++     +           + A++ L YGCGLR+SE   +   +I   +  L++ Q
Sbjct: 106 DISAVIYYCKTNK----------HRAMVALCYGCGLRVSELTHVKVSDIDGQRQLLKVCQ 155

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG---KPLNPGVFQRYIR 248
           GKG K R+V + P + + + +Y+     D        LF         P++   F++ + 
Sbjct: 156 GKGAKDRLVIISPVLLQFMRQYWQQYHPD------TWLFGSRWHGVIYPIHESTFRKGLT 209

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              +  G+    + H+LRH++ATH L  G  L  +Q  LGH  + +T+ Y + + +
Sbjct: 210 CAAKKAGITKPCSPHSLRHAYATHQLQAGMPLNQLQQQLGHQSIQSTERYLHWSPE 265


>gi|114319153|gb|ABI63576.1| integrase [Klebsiella pneumoniae]
          Length = 304

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 71/323 (21%), Positives = 130/323 (40%), Gaps = 64/323 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLPTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHF 290
           SFAT LL +G D+R++Q +LGH 
Sbjct: 282 SFATALLRSGYDIRTVQDLLGHS 304


>gi|56476508|ref|YP_158097.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|56312551|emb|CAI07196.1| phage-related integrase [Aromatoleum aromaticum EbN1]
          Length = 347

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 62/320 (19%), Positives = 117/320 (36%), Gaps = 24/320 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ + + L  ++  S  T+ +Y    R  L +      +     T+   +   +  F++ 
Sbjct: 27  QRFFAERLIQQQNASPRTVGAYRDTFRLLLTYAERERGKPPAKLTLGDFNAALVLDFLAH 86

Query: 78  RRTQKIGD-RSLKRSLSGIKSFLKYLKKR---KITTESNILNMRNLKKSNSLPRALNEKQ 133
             T++    RS    L+ +++F  Y+  +    +     IL +   +    L   L+  +
Sbjct: 87  LETERHHTVRSRNARLAAVRAFAHYVALQCPPTLQLAQQILAIPMKRFERPLLEYLSRDE 146

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQG 192
              ++          + W   R+  +  LLY  G R+SE + +   ++     S++R+QG
Sbjct: 147 VQAVL-----AAPDTSTWCGRRDRVMFALLYNTGARVSEMIGIRVADVTLGATSSVRLQG 201

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R VPL       I  +        +L    PL     G+ +        +     
Sbjct: 202 KGRKQRTVPLWKETAAEIRHWLKYA----DLRTDQPLVPNRSGRAMTRTNVAERLALAIT 257

Query: 253 YLGLP------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
                         + H+ RH+ A HLL  G D+  I   LGH    TT  Y   +    
Sbjct: 258 AATTQCPRLAGRRISPHSWRHTTAMHLLQAGVDITVIALWLGHESPVTTHGYVEADLAMK 317

Query: 307 GDWMMEIYDQTHPSITQKDK 326
              +    D   P  T++ +
Sbjct: 318 ERAL----DTLAPPETKRKR 333


>gi|227497530|ref|ZP_03927758.1| integrase/recombinase XerD [Actinomyces urogenitalis DSM 15434]
 gi|226832984|gb|EEH65367.1| integrase/recombinase XerD [Actinomyces urogenitalis DSM 15434]
          Length = 167

 Score =  165 bits (418), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 58/170 (34%), Positives = 96/170 (56%), Gaps = 5/170 (2%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           +  R+ A++ +LY  G+R+SE  +L   ++   + T+R+ GKG+K R+VP      +A+ 
Sbjct: 3   LARRDQALVEMLYATGVRVSELCALDLADVDRGERTVRVLGKGNKERVVPYGTPAARALE 62

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
            ++ L       +    LF G RG  ++P   ++ + +L    G+P     H LRHS AT
Sbjct: 63  GWWQLRARLARPDSGQALFLGARGGRVDPRTVRQVVHRLAAEAGVP-DLGPHGLRHSAAT 121

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           H+LS G DLRS+Q +LGH  L+TTQ YT+V+++     +  +Y+Q  P  
Sbjct: 122 HVLSGGADLRSVQELLGHSSLATTQRYTHVSAER----LRAVYEQAFPRA 167


>gi|55980943|ref|YP_144240.1| integrase/recombinase [Thermus thermophilus HB8]
 gi|55772356|dbj|BAD70797.1| integrase/recombinase [Thermus thermophilus HB8]
          Length = 313

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 128/294 (43%), Gaps = 26/294 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + + L +ERG S   ++ Y  D   +  FL                S   +RA + + R 
Sbjct: 34  YAEYLLLERGYSPRGVRRYLQDLAFWFRFLEAEGLSP---------SPEAVRALLLRER- 83

Query: 81  QKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                R ++  L+ ++S+ +Y  + +          +   K    LP     ++    ++
Sbjct: 84  --WAPRRVQGFLAALRSYYRYLREVKGEAASDPTEGIGRPKAGRRLPLHPGPEELKRFLE 141

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKGDK 196
                         A   A+   LYG GLRISEALSL  +N++ +  +   +R+ GKG+K
Sbjct: 142 AFREEKE------AALLEALARFLYGTGLRISEALSLKGRNVVLEGGSPVAVRVVGKGNK 195

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+VPL  + R+ +     L     N+NI        +G   +    +   R+     GL
Sbjct: 196 ERLVPLSKTAREVLEA---LGRPQGNVNIFTFSQGRRKGHVPSARWVEAKFREAALRAGL 252

Query: 257 -PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            P   T H LRH++AT L+  G +L +++ +LGH  ++TTQIY + + +   + 
Sbjct: 253 DPRRFTPHKLRHAYATLLVERGVELDAVKDLLGHESIATTQIYLHASRERLREA 306


>gi|219856083|ref|YP_002473205.1| hypothetical protein CKR_2740 [Clostridium kluyveri NBRC 12016]
 gi|219569807|dbj|BAH07791.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 293

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 139/311 (44%), Gaps = 22/311 (7%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+G ++  ++   +  + + +L  +  E+  SK T+  Y    ++   +L    E+    
Sbjct: 1   MKGRDIMILLKAAV-NQYKKYL--INTEK--SKETITGYSNHLKRMESYL---IEKFNYP 52

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             ++ ++ T +  ++  +  + +   S  +S   I+SF  Y  ++++  ++  LN+  +K
Sbjct: 53  PYLQDITLTNLEEYLDSQLARGLAQASRSKSYYIIRSFYNYCCRKELVEKNIALNLEPIK 112

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                   L + + + LV           K  +     I+  +Y  G+RISE  +L  ++
Sbjct: 113 VKRKERTYLTKNEVIVLVQ----------KMENELIKTIVMAIYHTGMRISECTNLKIKS 162

Query: 181 IMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           +      + I G KG+K R +P+  ++ K + +Y      ++N N     F       ++
Sbjct: 163 VDFKNKVIHIIGGKGNKDRDIPISDTLNKILTKYIKNERLEVNSN---YFFATKASGRIS 219

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           P    R I +  + LG     +AH LRHSFA+ L+    +L  IQ +LGH  L  T IYT
Sbjct: 220 PQHINRQINETVKRLGWEKHVSAHILRHSFASKLIQQEVNLVKIQKLLGHSDLRVTSIYT 279

Query: 300 NVNSKNGGDWM 310
           + + +     +
Sbjct: 280 HTSKEELRQAV 290


>gi|14010726|ref|NP_114212.1| hypothetical protein pFKN_p22 [Pseudomonas syringae pv. maculicola
           str. M6]
 gi|13926143|gb|AAK49554.1|AF359557_19 unknown [Pseudomonas syringae pv. maculicola str. M6]
          Length = 320

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 65/277 (23%), Positives = 123/277 (44%), Gaps = 23/277 (8%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T ++Y+ D   F  F+   + ++      R ++ + + A+ ++   + +   +++R L
Sbjct: 39  PRTRRAYQNDLEDFCSFVGLASADE-----FRVVTRSHVLAWRAQLEHRGLAGATIRRKL 93

Query: 93  SGIKSFLKYLKKRKITTE-SNILNMRNLKKSNSLPRALNEKQALTLVDNV---LLHTSHE 148
           + + S   +L +       + +  ++  +  +      NE +   L D+    LL    E
Sbjct: 94  AALASLFDHLLENNAIAGGNPVHGVKRPRIES------NEGKTPALGDHQAKALLEAPDE 147

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSV 206
           T     R+ A+L +L   GLR  EA  L   +I + +    L++ GKG K+R +PL P  
Sbjct: 148 TTLKGQRDRALLAVLLYHGLRREEAALLQVSDIQERRGIQHLKVHGKGGKVRYLPLHPIA 207

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLP-LSTT 261
              I +Y +     L    ++PLF  +RGK     +        +    +  G+      
Sbjct: 208 AGRIHQYLENSEHHLAER-KVPLFMPLRGKLTGAGITANGIYAVVTAYAKKAGIEVDGLG 266

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            H LR + AT+ L +  D+  +Q+ LGH  +STT+IY
Sbjct: 267 VHGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303


>gi|229193382|ref|ZP_04320331.1| Site-specific recombinase, phage integrase [Bacillus cereus ATCC
           10876]
 gi|228590096|gb|EEK47966.1| Site-specific recombinase, phage integrase [Bacillus cereus ATCC
           10876]
          Length = 327

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 61/298 (20%), Positives = 130/298 (43%), Gaps = 16/298 (5%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
             ++  + G+ + T+  Y    R F         +++ +  +R+++   I  +I     +
Sbjct: 38  FSHIAKQEGMRERTISDYAKFYRYF--------TKEVEVTDLRKMNADHIGLYIDSLLEK 89

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +   ++   LSG+KS  + L+K +   E+  +N   L+   S     N  Q   L   V
Sbjct: 90  GLSPVTVNIRLSGLKSLFRRLEKHEYIKENPAVNFSKLRTDESKIYTFNNSQIKRLFRVV 149

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
                  T +   R+   + L+  CG+R++E  +L   +I  D   + + G  +K R   
Sbjct: 150 -----DTTSYAGFRDYVAMLLMLHCGMRVNEVAALEINDIDFDNGVILLAGAKNKNRRSR 204

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PL 258
            +P  ++ + E   L    ++   ++  +F    G+ L+  + ++ +    R  GL    
Sbjct: 205 SIPMSKRIMGEIKQLITESMDYFEEVKHVFLTQDGRRLDNDIIRKRMYTYGRLSGLYREC 264

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             + H+LRH+FA + L +GG + ++  ILGH  +++T  Y  + S+   +    +  +
Sbjct: 265 RVSPHSLRHTFACNYLRDGGSVNALMHILGHKDIASTMRYVRMTSEEVKEQYETVLSK 322


>gi|119356102|ref|YP_910746.1| integron integrase [Chlorobium phaeobacteroides DSM 266]
 gi|119353451|gb|ABL64322.1| integron integrase [Chlorobium phaeobacteroides DSM 266]
          Length = 338

 Score =  165 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 68/327 (20%), Positives = 133/327 (40%), Gaps = 61/327 (18%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  + + + + + R  S+ T ++Y    ++++ F          ++  +++   EI AF+
Sbjct: 23  KLLELFREAMRV-RHYSRRTEETYCSWVKRYVHFH--------NMRHPKEMREPEINAFL 73

Query: 76  SKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +     +K+   +  ++LS +    +++  ++I    +++  R     + LP  L   + 
Sbjct: 74  THLAVEEKVSASTQNQALSALLFLYRHVIGKEIGDLGHLIRARKP---SHLPVVLTRDEV 130

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GK 193
             L+             +      +  L+YG GLR+ E L L  Q+I    + + ++ GK
Sbjct: 131 KALLVQ-----------LAGVKWLMASLMYGAGLRLMECLRLRVQDIDFSSNEILVRDGK 179

Query: 194 GDKIRIVPLLPSVRKAI------------------------------------LEYYDLC 217
           G K RI  L  S++K +                                     E+    
Sbjct: 180 GAKDRITMLPESLKKPLADHLKQIKSLHDKDLAEGWGRVLLPGALDRKYPNAPAEWRWQW 239

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            F      +           ++  + Q+ ++    +  L    T HT RHSFATHLL  G
Sbjct: 240 VFPQEHRWKNAKTGEEGRHHMDESLIQKAVKAAVFHAQLTKRATCHTFRHSFATHLLEGG 299

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSK 304
            D+R++Q +LGH  + TT IYT+V ++
Sbjct: 300 YDIRTVQELLGHNDVRTTMIYTHVLNR 326


>gi|331090722|ref|ZP_08339570.1| hypothetical protein HMPREF9477_00213 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330399991|gb|EGG79647.1| hypothetical protein HMPREF9477_00213 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 283

 Score =  165 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 63/293 (21%), Positives = 124/293 (42%), Gaps = 33/293 (11%)

Query: 18  RQNWLQNLEI---ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
            + +L+ LE     R L + ++  Y+     FL + A   EE         L+  ++R F
Sbjct: 2   YEKYLEQLEEAGKIRNLKERSINCYKNYVSYFLKYQAKPPEE---------LTCQDVRNF 52

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +  ++ + +   +L    S I+ F + +    I  +   + +  +   + LP  L   + 
Sbjct: 53  LLAKKEEGLKATTLNLYNSSIRFFYRNVL--HILWDD--ITVPRMILEHKLPTVLTVDEI 108

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L++ V           D +  A+   +Y  G+R+SE + L   +I      + ++   
Sbjct: 109 DRLLEAVD----------DIKYRAMFATMYSSGMRVSEVIHLHYDDISRSNMQIHVRDTK 158

Query: 195 DK-IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRR 252
           ++  R   L       + +Y+           +  LF        L     ++ +R+   
Sbjct: 159 NRMDRYTILSKRCLDILTQYWFE-----KGRPRGILFPNKFTGNYLTVSTLEQVMRRAVS 213

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
              LP   T H LRHSFATHL+  G + ++IQ++LGH    +T++Y +V++K+
Sbjct: 214 DAELPKKATPHCLRHSFATHLMEQGVERQNIQALLGHRDPKSTEVYLHVSNKS 266


>gi|289595770|ref|YP_003482466.1| integrase family protein [Aciduliprofundum boonei T469]
 gi|289533557|gb|ADD07904.1| integrase family protein [Aciduliprofundum boonei T469]
          Length = 270

 Score =  165 bits (417), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 71/281 (25%), Positives = 125/281 (44%), Gaps = 43/281 (15%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R  S  T ++Y    + +L                 +L+    R F+ K  + K    ++
Sbjct: 27  RKYSYRTGKAYIYVVKNYLR---------------SELTP---REFLLKYYSDK-SKSTI 67

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           +++   +K F + +   +   E  +      KK   LP  L+  +   ++          
Sbjct: 68  RQAYFALKFFYRNVLHERFNEEIPLA-----KKKEKLPVVLSRDEVKRMIYGT------- 115

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVR 207
               + ++  +L  LY  G+R+ E  ++  +++  ++  + I+  KGDK R+V L P+++
Sbjct: 116 ---HNIKHRLVLMFLYYAGMRLQEVRNIRWEDVEFEREIIHIKVAKGDKERVVFLHPNLK 172

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             +  Y            +  +F   RGK  +P   Q  ++   R   +  + T HTLRH
Sbjct: 173 NTLEIY--------GRKSKGYVFMSQRGKKYSPKSIQLIVKNAARRAKINKNVTPHTLRH 224

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           SFATHLL  G D+R IQ +LGH  L TTQIYT+V +K+   
Sbjct: 225 SFATHLLEGGADIRYIQQLLGHKHLKTTQIYTHVANKDIKK 265


>gi|301166953|emb|CBW26532.1| putative integrase/tyrosine recombinase [Bacteriovorax marinus SJ]
          Length = 317

 Score =  165 bits (417), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 118/299 (39%), Gaps = 32/299 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q +  N       S  T +SYE D R F  +      E+  I +   L    I  + + 
Sbjct: 16  YQEFFDNFN-----SLHTRRSYEIDIRHFFSW----AHEQFNISSYGDLERDHIIKYRNF 66

Query: 78  RRTQK------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALN 130
            +            +++ R L+ + S+  +L +R I   + + +++  ++    P  AL+
Sbjct: 67  LQEAGGRDGSPCAPKTVARKLAALSSYSDFLVERSILEFNPVTSIKRPRRDVKTPTNALS 126

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTL 188
             Q   L++ +   T          + A+L + +  GLR SE L+L  ++   +++   L
Sbjct: 127 GTQVRELLEAIPGDTPA-----GILHRALLMMFFTTGLRKSEILNLKFKDYREINEYRVL 181

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGK--------PLN 239
              GKG KI    L P   + +  Y          L  +  LF+             PLN
Sbjct: 182 EFIGKGGKIGQKVLHPDAVELLDLYLVEMQRQGRELGQEDWLFQPSHNPTNPQNLNKPLN 241

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           P      I    + +GL    T H+ R +F   LL NG D+ S+   + H  + TTQ Y
Sbjct: 242 PRTINEIIDYYAKKIGLNFKVTPHSCRATFIGELLENGVDIYSVAREVNHSSVKTTQEY 300


>gi|153001869|ref|YP_001367550.1| integron integrase [Shewanella baltica OS185]
 gi|151366487|gb|ABS09487.1| integron integrase [Shewanella baltica OS185]
          Length = 319

 Score =  165 bits (417), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 77/313 (24%), Positives = 129/313 (41%), Gaps = 58/313 (18%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RG S  T +SY    + F+ F      E +  + + Q        F++ +R   +   + 
Sbjct: 18  RGYSIRTEKSYLYWIKAFINFHHKRHPETMGTEEVAQF-----LTFLANQR--NVAINTQ 70

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           K +L+ +    +     ++      L      K   LP  L+  +   +++         
Sbjct: 71  KIALNALAYLYQKHLHHELGN----LGFCYATKQRYLPTVLSPSEISLILNE-------- 118

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVR 207
              +D R+  I+ LLYG GLR+SE L L  Q+I  +Q++L ++ GKG K R + L     
Sbjct: 119 ---LDGRDRLIIELLYGSGLRVSECLRLRVQDIDIEQASLTVRDGKGHKDRQIILSHKCA 175

Query: 208 KAILEYYDLCPFDLNLNIQL-----------------------------------PLFRG 232
             +  Y +      + + Q                                    P    
Sbjct: 176 IKLTAYINKAMEIQHSDNQQGIGPSLPNALERKYPNAFKQHGWMFIFPSTTTCINPYTGT 235

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +    L+  V ++ +    R + +    T HT RHSFATHLL +G D+RS+Q +LGH  +
Sbjct: 236 LCRHHLHQSVIRKALGNAVRNIKITKRVTCHTFRHSFATHLLQSGSDIRSVQELLGHNDV 295

Query: 293 STTQIYTNVNSKN 305
           STTQIYT+V  ++
Sbjct: 296 STTQIYTHVLGQH 308


>gi|75909304|ref|YP_323600.1| tyrosine recombinase XerD subunit [Anabaena variabilis ATCC 29413]
 gi|75703029|gb|ABA22705.1| tyrosine recombinase XerD subunit [Anabaena variabilis ATCC 29413]
          Length = 311

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 126/292 (43%), Gaps = 27/292 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GLS+ T + Y  D RQF  F        + +  IR +S     A+      Q     + +
Sbjct: 39  GLSRTTREQYSRDMRQFRAF--------VKLDDIRIISPMTFIAYAQHL-EQTYAVATTR 89

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEKQALTLVDNVLLHTSHE 148
           R L+ + SF  +  +      + +  +R  K S +L  ++L ++Q   ++D         
Sbjct: 90  RKLASLSSFCSFAVRLGFLAANPMAAVRKPKASTTLAGKSLTQQQVFRMLDRTD------ 143

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPS 205
               D RN  +L +LY  GLR+SEA+ L   +       ++T+ + GKG K R + +  S
Sbjct: 144 ----DHRNRCLLKVLYSLGLRVSEAVGLRWSDFTEVNPTKTTVSVLGKGGKYRTLVVPQS 199

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP----LNPGVFQRYIRQLRRYLGLPLSTT 261
           V   + E       +   +     +     K     L+     + ++     +GLP S +
Sbjct: 200 VWLELTELRTNQQHNGQNDYVFQSYSNRHRKQSGKQLDRCNASKIVKACAVAVGLPESVS 259

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           AH LRH+ A+H L+NG  ++ ++  LGH  +STT  Y   N  +     + +
Sbjct: 260 AHFLRHACASHSLANGASIQLVKETLGHANISTTNWYLEANPDDCASLYLNV 311


>gi|38257059|ref|NP_940713.1| Orf28 [Pseudomonas syringae pv. syringae]
 gi|37723836|gb|AAR02162.1| Orf28 [Pseudomonas syringae pv. syringae]
          Length = 319

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 65/277 (23%), Positives = 118/277 (42%), Gaps = 24/277 (8%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T ++Y+ D   F  F+        +    RQ++ + + A+ +    + +   +++R L
Sbjct: 39  PRTRRAYQNDLTDFSSFIGL-----ASADDFRQVTRSHVLAWRADLEQRGLAGATIRRKL 93

Query: 93  SGIKSFLKYLKKRKITTE-SNILNMRNLKKSN---SLPRALNEKQALTLVDNVLLHTSHE 148
           + + S   +L +       + +  ++  +  +     P AL + QA  L+D         
Sbjct: 94  AALASLFDHLLENNAVAGGNPVHGVKRPRIESNEGKTP-ALGDHQAKQLLD-----APDT 147

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSV 206
                 R+ AIL +L   GLR  EA  L   ++ + +    LR+ GKG KIR +PL P  
Sbjct: 148 ETLKGLRDRAILAVLLYHGLRREEAAQLKTGDLQERRGIKHLRVHGKGSKIRFLPLHPVA 207

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPL-STT 261
            + I  Y +            PLFR +RG      ++       +    +  G+ +    
Sbjct: 208 AERIYAYLEQDVERDAAP--GPLFRSLRGTTTGAGISANGIYTVVEACAKKAGIVVEHLG 265

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            H LR + AT+ L +  D+  +Q  LGH  +STT++Y
Sbjct: 266 VHGLRATAATNALEHDADIAKVQMWLGHANISTTRLY 302


>gi|168185301|ref|ZP_02619965.1| tyrosine recombinase [Clostridium botulinum Bf]
 gi|182671650|gb|EDT83611.1| tyrosine recombinase [Clostridium botulinum Bf]
          Length = 278

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 64/285 (22%), Positives = 121/285 (42%), Gaps = 26/285 (9%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE------- 55
             N+ ++      +   ++L  L   +G S+ T++SY+ D   F  FL  Y         
Sbjct: 2   KYNIQQLYDANFPQRLNDFLNYLRTIKGKSENTIESYKLDLIMFFRFLKLYKGMVPGETE 61

Query: 56  ------EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL-KRSLSGIKSFLKYLKKR-KI 107
                 + I+ + I+ +S T++ AF+S     +        R ++ +KSF ++L+ + KI
Sbjct: 62  FNDIEIKDISDEDIKNISLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKI 121

Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
             E+  L + + K S   P  L   ++  L+ ++              +  I+ +   CG
Sbjct: 122 IKENPALELESPKISKRNPVYLTLDESKRLLSSIDGKFKER-------DLCIVTMFLNCG 174

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQ 226
           LR+SE   +   NI +D   L + GKG+K R V L  +  K + +Y  +       +  +
Sbjct: 175 LRLSELCGINISNIKND--ILTVVGKGNKERTVYLNKACIKTLNDYLSVRKEIGEKIVDK 232

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFA 270
             LF       +N    +  +++  +  GL     + H LRH+ A
Sbjct: 233 DALFLSKNYTRINKRSVEMLVKKYVKKAGLDGEKYSPHKLRHTAA 277


>gi|325286409|ref|YP_004262199.1| integrase family protein [Cellulophaga lytica DSM 7489]
 gi|324321863|gb|ADY29328.1| integrase family protein [Cellulophaga lytica DSM 7489]
          Length = 297

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 76/280 (27%), Positives = 135/280 (48%), Gaps = 32/280 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRS 87
           +  SK T ++Y    +QFL ++            + Q+S   I  +  +  T Q +    
Sbjct: 34  KNYSKNTTKTYMHMFKQFLTYMY--------PMPLHQVSTAHIMYYHKELVTKQNVSASY 85

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
             +S++ IK +       K+     +  +    +K+  LP+ L+ ++   ++        
Sbjct: 86  QNQSINAIKFY-----IEKVLNLPKVQYDFCRPRKAKKLPKVLSLQEVADII-------- 132

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPS 205
             T   + ++  IL ++YGCGLRISE ++L  ++I  +   + ++  KG+K RI  L P+
Sbjct: 133 --TVTNNIKHKTILKMIYGCGLRISECVNLKVEDIDSNNMRVWVRNAKGNKDRITLLSPT 190

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           +   +  YY +         +  LF G  GK  +    ++   + ++   + +  T HTL
Sbjct: 191 MLAQLRAYYIVY------KPKKWLFEGADGKQYSASSIRQVFNRSKKKARVHMPATVHTL 244

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           RHSFATHLL  G +LR IQ +LGH    TT+IYT+V++ N
Sbjct: 245 RHSFATHLLDAGTNLRYIQKLLGHNSSKTTEIYTHVSTTN 284


>gi|28871740|ref|NP_794359.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|66044722|ref|YP_234563.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
 gi|302185971|ref|ZP_07262644.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Pseudomonas syringae pv. syringae 642]
 gi|28854992|gb|AAO58054.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|63255429|gb|AAY36525.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 320

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 65/277 (23%), Positives = 122/277 (44%), Gaps = 23/277 (8%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T ++Y+ D   F  F+   + ++      R ++ + + A+ +    + +   +++R L
Sbjct: 39  PRTRRAYQNDLEDFCSFIGLASADE-----FRVVTRSHVLAWRAHLEHRGLAGATIRRKL 93

Query: 93  SGIKSFLKYLKKRKITTE-SNILNMRNLKKSNSLPRALNEKQALTLVDNV---LLHTSHE 148
           + + S   +L +       + +  ++  +  +      NE +   L D+    LL    E
Sbjct: 94  AALASLFDHLLENNAIAGGNPVHGVKRPRIES------NEGKTPALGDHQAKALLEAPDE 147

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSV 206
           T     R+ A+L +L   GLR  EA  L   +I + +    L++ GKG K+R +PL P  
Sbjct: 148 TTLKGQRDRALLAVLLYHGLRREEAALLQVSDIQERRGIQHLKVHGKGGKVRYLPLHPIA 207

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLP-LSTT 261
              I +Y +     L    ++PLF  +RGK     +        +    +  G+      
Sbjct: 208 AGRIHQYLENSEHHLAER-KVPLFMPLRGKLTGAGITANGIYAVVTAYAKKAGIEVDGLG 266

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            H LR + AT+ L +  D+  +Q+ LGH  +STT+IY
Sbjct: 267 VHGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303


>gi|167746743|ref|ZP_02418870.1| hypothetical protein ANACAC_01455 [Anaerostipes caccae DSM 14662]
 gi|167653703|gb|EDR97832.1| hypothetical protein ANACAC_01455 [Anaerostipes caccae DSM 14662]
          Length = 351

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 59/304 (19%), Positives = 119/304 (39%), Gaps = 24/304 (7%)

Query: 34  LTLQSYECDTRQFLIFL-------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ----- 81
            T  +Y  D R F  FL         YT        + ++   ++  ++   +T      
Sbjct: 43  RTRIAYAYDLRVFFHFLMDENPVYKNYTVIDFKPADLDRIESVDLEEYMEYLKTYVSDDK 102

Query: 82  --KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
             +  +R + R +S +++F  Y  KR++   +  L +   +        L   +  +L+D
Sbjct: 103 RMQNTERGIFRKMSSLRTFYAYYYKRQLIKTNPTLLVDMPRIHEKEIIRLEADEVASLLD 162

Query: 140 NVLLHTSHETKWIDAR-------NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
            +     + T             + AI+ LL G G+R+SE + L   ++    + L +  
Sbjct: 163 FIEKGGDNLTGQKRMYYEKTKERDLAIITLLLGTGIRVSELVGLDMNDVDFKNNGLHLIR 222

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           KG K   V     V  A+L+Y +     +      +  LF  ++ K +     Q  +++ 
Sbjct: 223 KGRKEMTVYFGDEVSDALLQYIEGSRSKIIPREGHENALFYSMQRKRIGVQAVQNLVKKY 282

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDW 309
            R +      T H LR ++ T L     D+  +  +LGH  ++TT+  Y+ ++       
Sbjct: 283 ARQVTPLKKITPHKLRSTYGTALYEETDDIYLVAEVLGHNDVNTTRKHYSAMSDTKRRQA 342

Query: 310 MMEI 313
             ++
Sbjct: 343 AKKV 346


>gi|218128919|ref|ZP_03457723.1| hypothetical protein BACEGG_00491 [Bacteroides eggerthii DSM 20697]
 gi|217988882|gb|EEC55199.1| hypothetical protein BACEGG_00491 [Bacteroides eggerthii DSM 20697]
          Length = 350

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 71/311 (22%), Positives = 138/311 (44%), Gaps = 14/311 (4%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +   L I RG S  T +SY     Q++ FL    +      +    S + +  ++   
Sbjct: 17  EWFTSYLPIARGCSSHTQRSYFTALSQYMQFLQEEKKVTPNTLSAESYSKSNLNDWLLWL 76

Query: 79  R-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           + T+K  + +    LSG+KSF+K+L  + I   +  ++ + +K   ++ + ++E+     
Sbjct: 77  KKTRKCSNSTCNDRLSGVKSFIKFLSIKDIRFNAVYISSKEIKPMRTV-KVIHEEITQKA 135

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ----STLRIQGK 193
           + + L  T         R+ AI YL+Y  G RI E LS+   ++   +    + L I GK
Sbjct: 136 IKS-LFSTIRTDTRTGKRDLAIFYLIYSIGARIDEILSVKICDLHLHEYPNPNYLTIIGK 194

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLR 251
           G K R  P+L  V K +L Y ++   +   +       F     K ++     + ++   
Sbjct: 195 GYKCRTPPILKDVTKILLRYIEVFHNNDFASHSYLFYSFYNGEKKKISQEAINKRLKMYA 254

Query: 252 RYLG-----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
                    +P +   H+LRH+ A+H L  G ++ +IQ ++GH  + TT  Y  V+ +  
Sbjct: 255 AKANEIDKCVPRNLHCHSLRHARASHWLEQGLNIIAIQRLMGHADIRTTMRYIFVSVEQK 314

Query: 307 GDWMMEIYDQT 317
              +  +  ++
Sbjct: 315 NKALATLESKS 325


>gi|291522352|emb|CBK80645.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 159

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 58/164 (35%), Positives = 88/164 (53%), Gaps = 6/164 (3%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +L L+Y  G+R+SE +SLT  +I      +R   +  + RI+P+    R ++ +Y     
Sbjct: 1   MLELMYATGIRVSELVSLTIDDINVQAGYIRC-SERGRERIIPIGSVARISLRQYLKQAR 59

Query: 219 FDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
             +  +     LF    G+P++   F + ++Q     G+    T HTLRHSFA HLL NG
Sbjct: 60  PAMISDDSSAILFPNYSGQPMSRQGFWKILKQYAAKAGIESDITPHTLRHSFAAHLLENG 119

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            DLRS+Q +LGH  +STTQIY  +N+      + +IY  THP  
Sbjct: 120 ADLRSVQEMLGHSDISTTQIYLKMNT----GRIRDIYSHTHPRA 159


>gi|319654979|ref|ZP_08009052.1| hypothetical protein HMPREF1013_05674 [Bacillus sp. 2_A_57_CT2]
 gi|317393333|gb|EFV74098.1| hypothetical protein HMPREF1013_05674 [Bacillus sp. 2_A_57_CT2]
          Length = 258

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 58/256 (22%), Positives = 115/256 (44%), Gaps = 21/256 (8%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           I  ++   I+ ++ +   + +   SL   +  IKS  K+ ++ K  + + + +++  K  
Sbjct: 22  ITDITTESIKLYLGEVAAE-LKASSLCHRIRFIKSLFKWAQEEKYVSINPVSSIKEPKPE 80

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           + +P+ L E++   L +                  A+   +Y  G RI E ++L   +I 
Sbjct: 81  SRIPKFLTEEEIELLREACKT----------TFEKALFEFMYSTGYRIGEVVNLDKHSIN 130

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPG 241
             + ++ + GKG K R V +       +  Y      +   + Q  LF  IR    ++  
Sbjct: 131 MAEQSVIVFGKGKKEREVYINTRCSIWLKRY-----REERADDQQALFVTIRAPHRMSIA 185

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             +  I+Q+ +  G+      H LRHS+AT L++NG  L  IQ+++GH +  TT++Y  +
Sbjct: 186 QMRYVIKQISKRAGINKCIYPHQLRHSYATTLINNGAPLEVIQNLMGHEKSETTRVYAYL 245

Query: 302 NSKNGGDWMMEIYDQT 317
           +    G    E+Y + 
Sbjct: 246 S----GHLRRELYKKF 257


>gi|120553909|ref|YP_958260.1| integron integrase [Marinobacter aquaeolei VT8]
 gi|120323758|gb|ABM18073.1| integron integrase [Marinobacter aquaeolei VT8]
          Length = 329

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/326 (22%), Positives = 124/326 (38%), Gaps = 64/326 (19%)

Query: 20  NWLQNLE---IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
            +L  L      RGL+  T ++Y    ++F+ F      E +           E+ AF+S
Sbjct: 13  RFLDRLRNFIRLRGLAYKTEKTYVFWIKRFIRFHGRKHPESMG--------TAEVEAFLS 64

Query: 77  KRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
               Q  +   + + +L+ +    +      +      L     KK   LP   +  +A 
Sbjct: 65  HLVLQANVSVATQRVALNALIFLYREFLGTPLEN----LEYEAAKKPKRLPVVFSPDEAR 120

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKG 194
            ++DN           ++     +  L+YG GLRI+EAL L  +++      L ++ GKG
Sbjct: 121 RVIDN-----------LEGEFKLVAMLIYGAGLRINEALRLRVKDVDFGMQQLIVREGKG 169

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLN-------------------------IQLPL 229
            K R+  L   + + + +           +                             +
Sbjct: 170 SKDRVTLLPDRLIQPLQDQIHAALMQHQADLAKGCGSVYMPAGLSKKYPNASQEPDWQYV 229

Query: 230 FRG-----------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
           F              R   +     Q++ +   R  G+     +HT RHSFAT LL +G 
Sbjct: 230 FPALDLSIDPRSGIRRRHHMMDRTVQKHFKHAIRKAGIHKPAGSHTFRHSFATRLLESGY 289

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSK 304
           DLR+IQ +LGH  + TT+IYT+V  K
Sbjct: 290 DLRTIQKLLGHSDVRTTEIYTHVVRK 315


>gi|295402897|ref|ZP_06812822.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975066|gb|EFG50719.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
          Length = 301

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 63/303 (20%), Positives = 124/303 (40%), Gaps = 19/303 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  L  E    + T+ SY      FL +      E I    I +    +I+ +IS  + 
Sbjct: 8   FIGYL-YEEAKDEKTIASYRTTVVHFLTWKEQRDGEYI----IEETRPIDIKEYISYLKH 62

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS----LPRALNEKQAL 135
           Q K    ++ + ++ +K F  +L    I  ++ +  ++  K   +      + L +++  
Sbjct: 63  QCKRKPATINKYIAALKVFFAFLLSSGIIKDNPMTRIKVEKLDYANGANQTKWLTKEEQD 122

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQG 192
             +  V L      ++   RN AI+ L+   GLR++E  SL   +I     D   +  +G
Sbjct: 123 RFISYVQLE---PNEFKRLRNLAIIDLMLYSGLRVNEVSSLEINDIITKDKDVQVIIREG 179

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQL 250
           KG+K   V L+    K + ++       D +++   P LF   R         Q+ + + 
Sbjct: 180 KGNKFATVILVQKHAKNLRKWLKYRKGLDKDIHKSSPRLFVSERSPFFTERGIQKMLNKY 239

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                +    T H  RHSF  +L + G  +  I+ +  H  + TT IY   + +   + +
Sbjct: 240 AELANMD-HITPHRFRHSFCKNLANAGTPIELIRRLARHESIQTTAIYLESSQEEQIEAL 298

Query: 311 MEI 313
            ++
Sbjct: 299 RKV 301


>gi|46198918|ref|YP_004585.1| DNA integration/recombination/invertion protein [Thermus
           thermophilus HB27]
 gi|46196542|gb|AAS80958.1| DNA integration/recombination/invertion protein [Thermus
           thermophilus HB27]
          Length = 313

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 128/294 (43%), Gaps = 26/294 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + + L +ERG S   ++ Y  D   +  FL                S   +RA + + R 
Sbjct: 34  YAEYLLLERGYSPRGVRRYLQDLAFWFRFLEAEGLPP---------SPEAVRALLLRER- 83

Query: 81  QKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                R ++  L+ ++S+ +Y  + +          +   K    LP     ++    ++
Sbjct: 84  --WAPRRVQGFLAALRSYYRYLREVKGEAASDPTEGIGRPKAGRRLPLHPGPEELKRFLE 141

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKGDK 196
                         A   A+   LYG GLRISEALSL  +N++ +  +   +R+ GKG+K
Sbjct: 142 AFREEKE------AALLEALARFLYGTGLRISEALSLKGRNVVLEGGSPVAVRVVGKGNK 195

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+VPL  + R+ +     L     N+NI        +G   +    +   R+     GL
Sbjct: 196 ERLVPLSKTAREVLEA---LGRLQGNVNIFTFSQGRRKGHVPSARWVEAKFREAALRAGL 252

Query: 257 -PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            P   T H LRH++AT L+  G +L +++ +LGH  ++TTQIY + + +   + 
Sbjct: 253 DPRRFTPHKLRHAYATLLVERGVELDAVKDLLGHESIATTQIYLHASRERLREA 306


>gi|28371755|gb|AAO38263.1| tyrosine recombinase IntIA [Vibrio natriegens]
          Length = 320

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 81/321 (25%), Positives = 129/321 (40%), Gaps = 61/321 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRS 87
           R  S  T++SY    +++++F  F    K        LS   +  F+S    + K+  ++
Sbjct: 16  RHYSNKTIESYLFWIKRYIVFHQFAHPSK--------LSEEHVVQFLSHIAVKDKVAVKT 67

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
              +L  I    +   +  ++ E   +  +       LP  L   +    + +       
Sbjct: 68  QALALCSIAFLYRDFFQTPLSLE---MRFQKSLTERKLPVVLTRDEIRRFIQH------- 117

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
               ID +      LLYG GLR+ E L L  Q+I  D   +R+ QGKG K R V L   +
Sbjct: 118 ----IDPKYKLQTLLLYGSGLRLMECLRLRIQDIDYDYGAIRVWQGKGGKNRTVTLAKEL 173

Query: 207 RKAILEYYDLCPFDLNLNIQLP--------------------------LFRG-------- 232
             ++    DL       +  +P                          LF          
Sbjct: 174 HSSLKAQVDLARSYYQKDCHMPGYAGVYISEGLQRKYPNAQLDFNWHFLFPSAKLSVDPE 233

Query: 233 ---IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
              +R   +N    QR +++  +  G+  S T HTLRHSFATHLL +G D+R++Q  LGH
Sbjct: 234 MGELRRHHINESALQRAVKRSAKDAGIEKSVTCHTLRHSFATHLLESGADIRTVQEQLGH 293

Query: 290 FRLSTTQIYTNVNSKNGGDWM 310
             + TTQIYT+V  +     +
Sbjct: 294 SDVKTTQIYTHVIERGASGVL 314


>gi|262403450|ref|ZP_06080008.1| integron integrase IntI4 [Vibrio sp. RC586]
 gi|262349954|gb|EEY99089.1| integron integrase IntI4 [Vibrio sp. RC586]
          Length = 320

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 79/321 (24%), Positives = 132/321 (41%), Gaps = 61/321 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           R  +K T+++Y     +++ F        +  +        E+  F++    Q  +  ++
Sbjct: 16  RYYAKKTIEAYLHWITRYIHFHNKKHPSLMGDK--------EVEEFLTDLAVQGKVATKT 67

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
              +L+ +    K + K  ++ E   +  +  +    LP  L   +   L+D        
Sbjct: 68  QSLALNSLSFLYKEILKTPLSLE---IRFQRSQLERKLPVVLTRDEIRCLLDV------- 117

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
               +D +      LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V L   +
Sbjct: 118 ----VDPKYQLPAKLLYGSGLRLMECIRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKEL 173

Query: 207 R-----------------------------KAILEYYDLCPFDLNLNIQLPLFR------ 231
                                          A+ E Y   P++   +   P F+      
Sbjct: 174 YPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPE 233

Query: 232 --GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
              +R   +N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH
Sbjct: 234 SDVMRRHHMNETVLQKTVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGH 293

Query: 290 FRLSTTQIYTNVNSKNGGDWM 310
             + TTQIYT+V  +     +
Sbjct: 294 TDVKTTQIYTHVLDRGASGVL 314


>gi|154502506|ref|ZP_02039566.1| hypothetical protein RUMGNA_00319 [Ruminococcus gnavus ATCC 29149]
 gi|153796902|gb|EDN79322.1| hypothetical protein RUMGNA_00319 [Ruminococcus gnavus ATCC 29149]
          Length = 345

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 64/343 (18%), Positives = 124/343 (36%), Gaps = 26/343 (7%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQ-NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
           M     P I     +K  + ++   +   RGLSK T+ SY+      + ++      K  
Sbjct: 1   MRKQKTPSI----FMKYLEYYVNTYMPEARGLSKNTINSYKTTFTLLIKYMYSVKNMKAD 56

Query: 60  IQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES----NIL 114
             T   L    +  F+S     +K    +  + L+ + SF +Y +       S     +L
Sbjct: 57  EITFGCLDVNTLSDFMSWLEHERKCSVTTRNQRLAALYSFSEYAQNYDFDAASTFRSAVL 116

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            + + K            +       +LL   +       R+  +L  +Y  G R  E  
Sbjct: 117 RIPSKKAPKKRRVGFTTDEVK-----ILLALPNPKSETGLRDMVLLSFMYATGTRAQEVC 171

Query: 175 SLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
            LT +++      +T+ I GKG K R + +  +    + +Y      +   +    +F  
Sbjct: 172 DLTVKSVNFRSTGTTIDIVGKGSKARRIRIPDTCASMLKKYIKHRRIETEPDRH--IFSS 229

Query: 233 IRGKPLNPGVFQRYIRQLRRYLG-------LPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
              + +     +   ++  +               + H++RH+   H+L  G  +  I++
Sbjct: 230 QTHEHMTISCVEEIYKKYIKLAKEKTPNLFKEEHYSPHSMRHTTGQHMLEAGVPIMVIKA 289

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
            LGH  + TTQIYT          + E  +   P     D+K+
Sbjct: 290 FLGHASVQTTQIYTESPQATVDKHIREWNEMNFPRSIYIDEKD 332


>gi|218441747|ref|YP_002380076.1| integrase [Cyanothece sp. PCC 7424]
 gi|218174475|gb|ACK73208.1| integrase family protein [Cyanothece sp. PCC 7424]
          Length = 294

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 64/282 (22%), Positives = 121/282 (42%), Gaps = 31/282 (10%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSL 88
           G SK +  +Y    +QFL ++          + +++L   +++ ++S    +Q+    +L
Sbjct: 33  GKSKTSQNTYASHIKQFLEYVG---------KPLKELKLEDMQLWVSSLENSQRYKTATL 83

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEKQALTLVDNVLLHTSH 147
           K  ++ +KS L + +K      +    ++     N L  R L+E +  TL++        
Sbjct: 84  KLKINTVKSLLTFGQKVGYLQFNIGSAVKPPNPKNELSSRMLSETEVTTLIE-------- 135

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQGKGDKIRIVPLLPS 205
                + R+  IL L+Y CG+R+SE + L  ++    ++     + GKG K R+V +   
Sbjct: 136 -KANQNQRDRIILKLMYVCGMRVSEVVGLNWRDLVPNNNGGLAIVLGKGGKTRVVLIPEK 194

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           +   I +                +F   +   ++       I+Q  +  G+  + + H L
Sbjct: 195 LWLDIQQL---------PKTDDAVFISRKKNRISRKTVHYMIKQYAKQAGINGNVSPHWL 245

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           RHS ATH +  G +L  +Q  LGH  LS T  Y +     G 
Sbjct: 246 RHSHATHSIERGCNLHLLQQSLGHSNLSITSRYLHARPNEGS 287


>gi|15822601|gb|AAK73287.1| DNA integrase IntIPac [Pseudomonas alcaligenes]
          Length = 321

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 75/320 (23%), Positives = 129/320 (40%), Gaps = 60/320 (18%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           R  S  T   Y    ++++ F  +   +++           E+ AF+S    ++ +   +
Sbjct: 18  RHYSIRTEAVYLEWVKRYIRFHKYRHPQEMGG--------PEVEAFLSDLAVRRDVSAST 69

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++LS I    K + + ++     ++  R       LP  L  ++  +++         
Sbjct: 70  QNQALSAILFLYKQVLQVELPWMDGVIRARRP---QRLPVVLTREEVASVLAQ------- 119

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
               +D     I  LLYG G+R+ E L L  +++   +  + I+ GKG K R+  L   +
Sbjct: 120 ----LDGTLWLIASLLYGSGMRLMEVLRLRVKDVEFARLEILIRDGKGQKDRVTMLPRKL 175

Query: 207 RKAIL------------------------------------EYYDLCPFDLNLNIQLPLF 230
              +                                     E+     F      + P  
Sbjct: 176 AAPLELHLQRVRALHEQDLREGYGRANLPHALARKYPNAAAEWGWQFVFPSVNRSEDPRS 235

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
            GI    L+    QR +R   R +GL    T HTLRHSFATHLL +G D+R++Q +LGH 
Sbjct: 236 GGIFRHHLHEKTIQRAVRNAVRRVGLHKPATPHTLRHSFATHLLESGQDIRTVQELLGHA 295

Query: 291 RLSTTQIYTNVNSKNGGDWM 310
            + TTQIYT+V ++ G   +
Sbjct: 296 DVKTTQIYTHVLNRGGLGVL 315


>gi|241992505|gb|ACS73587.1| IntI [uncultured bacterium]
          Length = 312

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 70/321 (21%), Positives = 129/321 (40%), Gaps = 63/321 (19%)

Query: 22  LQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           L  +  E   R  S  T ++Y   +R+F++F      +++           E+R F+S  
Sbjct: 14  LDRMRAEIRVRHYSIRTEEAYVDWSRRFILFHDKRHPKEMG--------AEEVRDFLSHL 65

Query: 79  R-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + +   +  ++ S +    + + K ++     ++     K +  LP  L   +   L
Sbjct: 66  ALERNVSASTQNQAKSALLFLYREVLKIELPWLDEVI---AAKSAKRLPVVLTPTETRRL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDK 196
           ++++                 +  LLYG G+R+ E L L  +++  ++  + ++ GKG+K
Sbjct: 123 LNSM-----------SGTMGLVASLLYGTGMRLLEGLRLRVKDVEFERREIIVREGKGNK 171

Query: 197 IRIVPLLPSVR------------------------------------KAILEYYDLCPFD 220
            R+  L  ++                                     KA   +     F 
Sbjct: 172 DRVTVLPENLILPLQAHLKKVKALHERDLEAGFGEVYLPDALAKKYPKAGRAWGWQFVFP 231

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
             +    P     R   L     QR +R+  +   +    + HTLRHSFATHLL +G D+
Sbjct: 232 STVRSVDPRSGIERRHHLYEASVQRAVREAAKLAEIIKPVSPHTLRHSFATHLLQSGYDI 291

Query: 281 RSIQSILGHFRLSTTQIYTNV 301
           R++Q +LGH  +STT IYT+V
Sbjct: 292 RTVQELLGHSDVSTTMIYTHV 312


>gi|258625491|ref|ZP_05720383.1| site-specific recombinase IntI [Vibrio mimicus VM603]
 gi|258582197|gb|EEW07054.1| site-specific recombinase IntI [Vibrio mimicus VM603]
          Length = 320

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 79/327 (24%), Positives = 135/327 (41%), Gaps = 62/327 (18%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           ++++  R  +K T+++Y     +++ F        +  +        E+  F++      
Sbjct: 11  EHMQT-RFYAKKTIEAYLHWITRYIYFHNKKHPSLMGDK--------EVELFLTHLAVNG 61

Query: 83  -IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +  ++   +L+ +    K + K  ++ E   +  +  +    LP  L   +   L+D  
Sbjct: 62  NVAAKTQSLALNSLSFLYKEILKTPLSLE---IRFQRSQLERKLPVVLTRDEIRRLLDV- 117

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV 200
                     +D +      LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V
Sbjct: 118 ----------VDPKYQLPAKLLYGSGLRLMECIRLRVQDIDFDYGAIRIWQGKGGKNRTV 167

Query: 201 PLLPSVR-----------------------------KAILEYYDLCPFDLNLNIQLPLFR 231
            L   +                               A+ E Y   P++   +   P F+
Sbjct: 168 TLAKELYPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQ 227

Query: 232 --------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                    +R   +N  V QR +R+  +  G+  + T HTLRHSFATHLL  G D+R++
Sbjct: 228 LSLDPESDAMRRHHMNETVLQRTVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTV 287

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWM 310
           Q  LGH  + TTQIYT+V  +     +
Sbjct: 288 QEQLGHTDVKTTQIYTHVLDRGASGVL 314


>gi|149377412|ref|ZP_01895156.1| integrase/recombinase (XerC/CodV family) protein [Marinobacter
           algicola DG893]
 gi|149358336|gb|EDM46814.1| integrase/recombinase (XerC/CodV family) protein [Marinobacter
           algicola DG893]
          Length = 330

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 80/344 (23%), Positives = 136/344 (39%), Gaps = 67/344 (19%)

Query: 1   MEGNNLPEIV--SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI 58
           M+ +  P I       L + +++++     RGL+  T ++Y    R+F+ F      E +
Sbjct: 1   MDMDIPPAIPVQPTRFLDKLRSFIRM----RGLAYATEKTYVFWIRRFIRFHGRKHPETM 56

Query: 59  TIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
                      ++ AF+S    Q      + + +L+ +    +      I  ++  LN  
Sbjct: 57  G--------SADVEAFLSHLVLQANASVATQRVALNALIFLYREFM--GIPLDN--LNYE 104

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             +K   LP   + ++A T ++N           ++     I  L+YG GLRI+E L L 
Sbjct: 105 AARKPAKLPTVFSPEEAKTTINN-----------LEGEYRLIAMLIYGSGLRINEVLRLR 153

Query: 178 PQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAI-------------------------- 210
            +++      L ++ GKG+K RI  L  S+ +++                          
Sbjct: 154 VKDVDFGMQQLVVRSGKGNKDRITLLPSSLIQSLTRQIEAALHQHSSDLAKGYGSVYLPA 213

Query: 211 ----------LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
                      E      F        P     R   +     Q+  R   R  G+    
Sbjct: 214 GLARKYPNASQEPGWQYVFPAAELSVDPRSGIRRRHHMIDRTVQKNFRIAIRSAGIRKPA 273

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            +HT RHSFAT LL +G D+R+IQ +LGH  + TT+IYT+V  K
Sbjct: 274 NSHTFRHSFATRLLESGYDIRTIQKLLGHADVRTTEIYTHVVRK 317


>gi|308176207|ref|YP_003915613.1| phage integrase family protein [Arthrobacter arilaitensis Re117]
 gi|307743670|emb|CBT74642.1| phage integrase family protein [Arthrobacter arilaitensis Re117]
          Length = 360

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 68/343 (19%), Positives = 125/343 (36%), Gaps = 58/343 (16%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF-- 74
           +  ++L  L  +R  S  T ++Y  D    L F  +  E+ +TI+ +   +      F  
Sbjct: 28  QANDYLGYLS-DRNYSPATTRAYGYDL---LAFCRWLHEQNLTIEAVDTNTLINYLKFCK 83

Query: 75  --------------ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----- 115
                         +  +R       ++ R ++ +     +L  R     + +       
Sbjct: 84  QSSVPGRPGPNVMTLDGQRADGYAPATVNRRMAAVSGLFTFLAMRDPCLPNPMPKGQESR 143

Query: 116 ------------------MRNL---KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
                              R+    ++   LPR+L   + + L                 
Sbjct: 144 WVSSAQRSGLLGHLATPAARSPLRVREPRRLPRSLESDEVIALFQ----------GLRTY 193

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R+ A+  L+  CGLR  E L+L  +++      L + GKG + R VPL   V   I  Y 
Sbjct: 194 RDRAMAGLMLYCGLRAGEVLALRIRDVDIGGRWLLVLGKGSRERRVPLDVDVAGVIQTYL 253

Query: 215 DLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                + +      + +G  RG PL     +   R  R   G+P     H LRH+F + L
Sbjct: 254 LAERPESDEQRLFLVAKGANRGLPLTAAGLRTIFRYHREISGVPDG-HPHALRHTFGSAL 312

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            ++G DL  ++ +LGH  ++TT  Y ++   +         ++
Sbjct: 313 AASGVDLSIMRELLGHAHVNTTARYIHLVPAHVKSEYDAAINR 355


>gi|325661848|ref|ZP_08150469.1| hypothetical protein HMPREF0490_01205 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471826|gb|EGC75043.1| hypothetical protein HMPREF0490_01205 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 322

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 67/306 (21%), Positives = 122/306 (39%), Gaps = 28/306 (9%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E+ + E L   Q +L    IE G S+ T+Q Y     + L  +            +R++S
Sbjct: 41  EVTNDEYL---QLFLDAKRIE-GCSERTIQYYSVTVDKMLQKIQ---------TPVRKIS 87

Query: 68  YTEIRAFI-SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
             EIR ++   ++       ++      I SF  +L++     +S +  +  +K    + 
Sbjct: 88  TEEIRKYLVDYQKINDCSKVTVDNVRRNISSFFSWLEEEDYILKSPMRRIHKIKTKQPVK 147

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             ++++    L D+              R+ A++ LLY  G+R+ E ++L   ++  +  
Sbjct: 148 EIISDEAIEMLRDHC----------QCPRDLAMIDLLYSTGIRVGELVNLNISDVDFEAR 197

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
              + GKGDK R V      +  +L Y        + N  L +   +    L     +  
Sbjct: 198 ECVVFGKGDKERRVYFDAKAKLHLLNYLSER---KDNNPALFVTLDVPYDRLKISGVEIR 254

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           IR L R L +      H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN  N 
Sbjct: 255 IRTLGRKLNMEK-IHPHKFRRTMATRAIDKGMPIEQVQKLLGHSQIDTTMQYAIVNQTNV 313

Query: 307 GDWMME 312
                +
Sbjct: 314 KTSHQK 319


>gi|170289596|ref|YP_001739834.1| integrase family protein [Thermotoga sp. RQ2]
 gi|281413176|ref|YP_003347255.1| integrase family protein [Thermotoga naphthophila RKU-10]
 gi|170177099|gb|ACB10151.1| integrase family protein [Thermotoga sp. RQ2]
 gi|281374279|gb|ADA67841.1| integrase family protein [Thermotoga naphthophila RKU-10]
          Length = 253

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 63/288 (21%), Positives = 122/288 (42%), Gaps = 46/288 (15%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
             +L+ L++ +  S+ TL  Y    R+F  F                ++    + +++  
Sbjct: 2   DEYLEYLKVVKKRSERTLYQYRSILREFTRF--------------EPVTPETWKEYLNT- 46

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALTL 137
              K    + +  L  +K++L +   R +   E    N     +   LP+A+   +   +
Sbjct: 47  -ISKNTPATQRNKLVVVKNYLNWKADRGLLNIEERFWNEAEPPRHTVLPKAIELDEVRRI 105

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQGKGDK 196
           ++             ++   AI  +L   G+R+SE ++L+  +I  ++ + +RI+GKG+K
Sbjct: 106 IEACD----------NSLYRAIFKVLANTGMRVSEIVNLSVHDISVNETARIRIKGKGNK 155

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            RI+ +   + + ++                    G   K  +    QR +++  R  G+
Sbjct: 156 ERIINISKELVEELMN------------------SGFFEKKPSVRSIQRAVKRYARKAGI 197

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
               T H  RHSFA  L+  G  L  IQ++LGH  +STT IY  + S+
Sbjct: 198 KKKVTPHIFRHSFAVALIERGVPLNKIQALLGHANISTTSIYLKIASE 245


>gi|332670451|ref|YP_004453459.1| integrase family protein [Cellulomonas fimi ATCC 484]
 gi|332339489|gb|AEE46072.1| integrase family protein [Cellulomonas fimi ATCC 484]
          Length = 340

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 72/316 (22%), Positives = 128/316 (40%), Gaps = 15/316 (4%)

Query: 10  VSFELLKERQNWLQNLEI--ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL- 66
           ++  L    + +L +      RGL+  +   Y  D   +   +A        +     L 
Sbjct: 1   MAVFLSTVVEPFLTDRATLTRRGLTDGSRAGYRQDVVAWAHQIAQDLGRLTGVDDEDPLA 60

Query: 67  -----SYTEIRAFISKRRTQKI-GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
                  TE+    + R  +      +++R +  ++ F+++L+     T   +L +   +
Sbjct: 61  LVSSDDLTELNVKNAYRSIRGREAASTVQRRVGTLRLFVRWLQMEGHLTGDPMLRIEAPE 120

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +   LP   ++ + L L          + +   AR+ A   LL   G+R SE  SLT ++
Sbjct: 121 RPVRLPAGWDDAELLRLAKVAWEVAPGDRRRWPARDRAAFALLSTTGVRASELCSLTDRS 180

Query: 181 ---IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGK 236
                D ++ L + GKG++ R VP+ P   + + EY               PL R   G+
Sbjct: 181 LRVEDDGEAVLTVIGKGNRQRNVPVPPEALRVVEEYMAERDERFGPPEHGAPLLRLSSGR 240

Query: 237 PLNPGVFQRYIRQLRRYLGLPL--STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           PL  G     +    R  G+       AH  RH+FA  L+ +G    ++QS+LGH  L T
Sbjct: 241 PLQRGALNHLVDGWIRRSGVAKQEGEAAHGFRHTFAKGLIRSGVPAPAVQSLLGHEDLKT 300

Query: 295 TQIYTNVNSKNGGDWM 310
           T IY    + +  D +
Sbjct: 301 TGIYVKATAADVRDAV 316


>gi|258543088|ref|YP_003188521.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-01]
 gi|256634166|dbj|BAI00142.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-01]
 gi|256637226|dbj|BAI03195.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-03]
 gi|256640278|dbj|BAI06240.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643335|dbj|BAI09290.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646390|dbj|BAI12338.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649443|dbj|BAI15384.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652429|dbj|BAI18363.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655487|dbj|BAI21414.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-12]
          Length = 291

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 78/291 (26%), Positives = 130/291 (44%), Gaps = 36/291 (12%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + WL         S  T+++Y  +  +F  F+A         + +  ++  +I+A+
Sbjct: 24  LPLVKTWLH------NRSSNTVRAYRTNVAEFARFVA---------KPMADVALADIQAW 68

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-PRALNEKQ 133
                     D + +R +S +KS L Y  K     +      R  +  ++L  R L+ +Q
Sbjct: 69  NDSMADA--ADSTRRRKISAVKSLLTYGHKLGFLPQDAGAAFRMERGRDNLNERILSRQQ 126

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ--STLRIQ 191
            L ++              D R  A+L LLYG GLRISEA +L  +++   Q      + 
Sbjct: 127 VLAML----------AGEKDPRRHALLALLYGTGLRISEACALRWRDMTRRQSGGIATVF 176

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG K R V + PS+ K I           ++    P+  G  G  L+     R +++  
Sbjct: 177 GKGGKTRHVQVSPSLWKEI------AAVRSDVGPDAPVIPGHDGGLLHERAVDRVVKRAA 230

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +  GLP   +AH LRH+FA+H L  G  +  +Q+ LGH  L+TT  Y++ +
Sbjct: 231 KRAGLPPDVSAHWLRHAFASHQLDAGQPVHWVQAQLGHSSLATTTRYSHAS 281


>gi|12831416|gb|AAK02074.1| site-specific recombinase IntIA [Vibrio metschnikovii]
          Length = 320

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 74/327 (22%), Positives = 132/327 (40%), Gaps = 62/327 (18%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQ 81
           + +++ R  +  T++SY     Q+++F        +           ++  F++     +
Sbjct: 11  EYMQV-RYYANKTIESYIHWITQYVVFHNKTHPNLLG--------SRDVEQFLTYLAVEK 61

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
           K+  ++   +   +    + + K  +T E   +  +  +    LP  +  ++     ++ 
Sbjct: 62  KVATKTQSLAFEALSFLYREIIKEPLTLE---MKFQKSQLERKLPIVMTREEIKRFFNH- 117

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV 200
                     +D +    + LLYG GLR+ E + L  Q+I  D   LRI QGKG K R V
Sbjct: 118 ----------VDPKYQLHIKLLYGSGLRLMECVRLRVQDIDFDYGALRIWQGKGGKNRTV 167

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQ--------------------------LPLFRGI- 233
            L   +   I E   L     + +++                            LF    
Sbjct: 168 TLAKELHPLIKEQISLAKRYYDKDMEAKGYGGVWLPNALNSKYPTAPFEFHWHYLFPSNA 227

Query: 234 ----------RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                     R   +N    QR +++  +   +  S + HTLRHSFATHLL +G D+R++
Sbjct: 228 LSVDQESNLLRRHHINETSLQRTVKRAVKEAEIKKSVSCHTLRHSFATHLLESGADIRTV 287

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWM 310
           Q  LGH  +STTQIYT+V  +     +
Sbjct: 288 QEQLGHADVSTTQIYTHVLDRGANGVL 314


>gi|262393940|ref|YP_003285794.1| integron integrase IntI4 [Vibrio sp. Ex25]
 gi|262337534|gb|ACY51329.1| integron integrase IntI4 [Vibrio sp. Ex25]
          Length = 320

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 78/321 (24%), Positives = 130/321 (40%), Gaps = 61/321 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           R  +  T++SY    ++F+ F          +     L+  ++  F+S     +K+  ++
Sbjct: 16  RHYANKTIESYLFWIKRFITFHQ--------LAHPSTLAEDDVVQFLSYLAVKEKVAVKT 67

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
              +L+ I    +   K  ++ +   +  +       LP  L  ++    V +       
Sbjct: 68  QALALNSISFLYRDYFKTPLSLD---MRFQKSLTEKKLPVVLTREEIRRFVQH------- 117

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
               ID R    + LLYG GLR+ E L L  Q+I  D   +R+ QGKG K R V L   +
Sbjct: 118 ----IDPRYKLHIQLLYGSGLRVMECLRLRVQDIDYDYGAVRVWQGKGGKNRTVTLAKEL 173

Query: 207 RKAILEYYDLCPFDLNLNIQLP--------------------------LFRG-------- 232
            + +    +L       +  +P                          LF          
Sbjct: 174 HEPLKAQVNLARDYYFKDRHMPGYAGVYISEGLRRKYPKAELDFNWHFLFPSTKLSTDRD 233

Query: 233 ---IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
              +R   +N    QR +++      +  + T HTLRHSFATHLL +G D+R++Q  LGH
Sbjct: 234 TGELRRHHINESAIQRAVKRAATDACIEKTVTCHTLRHSFATHLLESGADIRTVQEQLGH 293

Query: 290 FRLSTTQIYTNVNSKNGGDWM 310
             + TTQIYT+V  +  G  +
Sbjct: 294 TDVKTTQIYTHVIERGAGGVL 314


>gi|148270896|ref|YP_001245356.1| phage integrase family protein [Thermotoga petrophila RKU-1]
 gi|147736440|gb|ABQ47780.1| phage integrase family protein [Thermotoga petrophila RKU-1]
          Length = 256

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/289 (22%), Positives = 119/289 (41%), Gaps = 46/289 (15%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+ L + +  S+ TL  Y    ++F  +                ++    R ++  
Sbjct: 4   VEEYLEYLRVVKKRSERTLYQYRSILKEFAEY--------------EPVTLDSWREYLH- 48

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALT 136
            R       + +  L  +K++L +   R I   +    N     +   LP+A+  ++   
Sbjct: 49  -RISSNAPTTQRNKLVVVKNYLNWKADRGILNVKDRFWNEAEPPRYAVLPKAVELEEIKR 107

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGD 195
           +++                  AI  +L   G+R+SE + L+ Q+I   D + +RI+GKG+
Sbjct: 108 IIEACD----------HRMYKAIFKVLANTGMRVSELVGLSIQDISLNDTARIRIKGKGN 157

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RI+ +   + + ++                    G   K  +    QR +++  R  G
Sbjct: 158 KERIINVSRDLVEELVR------------------SGFFEKKPSVRSIQRAVKRYARKAG 199

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +    T H  RHSFA  L+  G  L  IQ++LGH  +STT IY  + S+
Sbjct: 200 IRKKVTPHIFRHSFAVALIERGIPLNKIQALLGHANISTTSIYLKIASE 248


>gi|169334405|ref|ZP_02861598.1| hypothetical protein ANASTE_00805 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259122|gb|EDS73088.1| hypothetical protein ANASTE_00805 [Anaerofustis stercorihominis DSM
           17244]
          Length = 353

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 59/309 (19%), Positives = 120/309 (38%), Gaps = 30/309 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTE--------EKITIQTIRQLSYTEIRAFISKRRTQ-- 81
           S  T  +Y  D + F  +L             + I++  +  +   ++  F         
Sbjct: 39  SIKTRIAYAMDLKIFFEYLIENHPLFTHLKDIKDISLSDLDNVKAVDLEDFTEYLSYYTK 98

Query: 82  ------------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
                          +R   R LS ++SF KY  K+++   +  + +   K        L
Sbjct: 99  EHYKNENSKVQLSNSNRGKMRKLSTLRSFYKYYFKKEMIKTNPTVLVDLPKNYEKPIIRL 158

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNS------AILYLLYGCGLRISEALSLTPQNIMD 183
              +   L+D +    S     +   N       AI+ LL G G+RISE + L   ++  
Sbjct: 159 EPNEVANLLDEIESGKSLTPAQLKYHNKTKVRDLAIVTLLVGTGIRISECVGLNVNDVDF 218

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           +  +  +  KG    I+ +   VR+A+L Y      +++   +  LF  ++ K +     
Sbjct: 219 NNDSFVVTRKGGNKTILYMPEEVREALLRYLRETRENIDTE-ESALFLSLQNKRMTQSSI 277

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN 302
           Q+ +++  + +    + + H LR ++ T+L    GD+  +  +LGH  ++TT + Y  + 
Sbjct: 278 QKMLKKYTKIVVPLKNISPHKLRSTYGTNLYKETGDIYLVADVLGHKDVNTTKKHYAAIE 337

Query: 303 SKNGGDWMM 311
            +       
Sbjct: 338 EERRKIAAR 346


>gi|262164337|ref|ZP_06032075.1| integron integrase IntI4 [Vibrio mimicus VM223]
 gi|262026717|gb|EEY45384.1| integron integrase IntI4 [Vibrio mimicus VM223]
          Length = 320

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 79/327 (24%), Positives = 136/327 (41%), Gaps = 62/327 (18%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           ++++  R  +K T+++Y     +++ F        +  +        E+  F++      
Sbjct: 11  EHMQT-RFYAKKTIEAYLHWITRYIYFHNKKHPSLMGDK--------EVELFLTHLAVNG 61

Query: 83  -IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +  ++   +L+ +    K + K  ++ E   +  +  +    LP  L   +   L+D  
Sbjct: 62  NVAAKTQSLALNSLSFLYKEILKTPLSLE---IRFQRSQLERKLPVVLTRDEIRRLLDV- 117

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV 200
                     +D +      LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V
Sbjct: 118 ----------VDPKYQLPAKLLYGSGLRLMECIRLRIQDIDFDYGAIRIWQGKGGKNRTV 167

Query: 201 PLLPSVR-----------------------------KAILEYYDLCPFDLNLNIQLPLFR 231
            L   +                               A+ E Y   P++   +   P F+
Sbjct: 168 TLAKELYPHLKEQIALAKRYYDKDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQ 227

Query: 232 --------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                    +R   +N  V QR +R+  +  G+  + T HTLRHSFATHLL  G D+R++
Sbjct: 228 LSLDPESDVMRRHHMNETVLQRTVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTV 287

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWM 310
           Q  LGH  + TTQIYT+V ++     +
Sbjct: 288 QEQLGHTDVKTTQIYTHVLNRGASGVL 314


>gi|13474970|ref|NP_106607.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|13474971|ref|NP_106531.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025717|dbj|BAB52317.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025794|dbj|BAB52393.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 407

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 79/300 (26%), Positives = 131/300 (43%), Gaps = 14/300 (4%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LPE+ +    K    + + L  ERGLS  TL +Y    R FL     +  +      +R 
Sbjct: 103 LPEVDTSAKGKLIDAFGEFLRKERGLSASTLTNYLPIIRGFLD--EQFGGKDPGFDHLR- 159

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-- 123
               ++  FI +R          K +++ ++SFL++L++R +      + +  +      
Sbjct: 160 --VGDVHRFIVRRAQAG-SLGRAKLAVTALRSFLRFLQQRGLLATDLAVAVPGIAGWRLA 216

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            LP+AL  +Q   L+ +    T    +     + A+L LL   GLR  E  +LT  ++  
Sbjct: 217 HLPKALRAEQVERLLASCDRRTPAGRR-----DYAVLMLLARLGLRGGEVSALTLDDLDW 271

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           D   + + GKG ++  +PL   V  A+++Y        +        R  R   ++    
Sbjct: 272 DCGEIVVHGKGQRLARLPLPADVGAALVDYLRQDRPACSTRRVFIRTRAPRRGFVSQSTI 331

Query: 244 QRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              +R+  +  GL P    AH LRHS AT LL  G  L  I  +L H + +TTQIY  V+
Sbjct: 332 CCIVRRALKRAGLTPAFKGAHLLRHSLATDLLRRGASLVEIGQLLRHSQPNTTQIYAKVD 391


>gi|326204493|ref|ZP_08194350.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
 gi|325985286|gb|EGD46125.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
          Length = 301

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 65/306 (21%), Positives = 133/306 (43%), Gaps = 16/306 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +       +L +L+     S+ T+++Y  D      FL    +  +    +  +  + + 
Sbjct: 5   DFQIAVNGFLNDLDCS-HCSESTIKAYRSDLTLLNEFLDLRYKSLLN--NLSAMKTSHVL 61

Query: 73  AFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK-KSNSLPRALN 130
            +       +    ++  R     + F +YL+      ++  L +++ K K    P  L 
Sbjct: 62  QYRDFLFHKKGFKRKTADRKYFCFRKFCEYLELAGFIEKNPALEVKHKKYKDTKAPNFLE 121

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            ++   ++D V L  +  T    AR++A+L +L   G R SE + L  ++I   ++ + I
Sbjct: 122 WEEIYQIIDVVALFETENT----ARDAAMLSVLAYLGCRRSEVIDLDWKDIDFQKNEIAI 177

Query: 191 -QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
            + K      +P+ P++  A+  YY    F      + PLF   RG  L+   F++   +
Sbjct: 178 YRRKTKTYDYLPMHPNLENAMRRYYAENRF----TPKGPLFLSERGNRLSVTAFKQMFDK 233

Query: 250 LRRYLGLPL--STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
              Y G+      T HT RHSF ++++  G  +  IQ   GH  L + Q+Y ++ +++  
Sbjct: 234 AVLYSGIKKEFDITPHTFRHSFISNMIREGASIAEIQEYTGHSDLGSLQVYFHMGTQHKR 293

Query: 308 DWMMEI 313
           + + +I
Sbjct: 294 NILSKI 299


>gi|221642264|ref|YP_002533351.1| integrase:recombinase [Bacillus cereus Q1]
 gi|229052846|ref|ZP_04195288.1| Site-specific recombinase, phage integrase [Bacillus cereus AH676]
 gi|229199805|ref|ZP_04326410.1| Site-specific recombinase, phage integrase [Bacillus cereus m1293]
 gi|221243199|gb|ACM15908.1| integrase:recombinase [Bacillus cereus Q1]
 gi|228583670|gb|EEK41883.1| Site-specific recombinase, phage integrase [Bacillus cereus m1293]
 gi|228721504|gb|EEL73006.1| Site-specific recombinase, phage integrase [Bacillus cereus AH676]
          Length = 322

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/290 (21%), Positives = 125/290 (43%), Gaps = 16/290 (5%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G  K T+  Y    R F+         ++ I+ +  ++   ++ +I+K   +++   ++ 
Sbjct: 41  GFRKRTIDDYSKLFRYFM--------RELNIEKVEIITAAHVQMYINKLLNRELAPATVN 92

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             +S +KS  K L ++     +  ++   L+   +    LN  Q   +   V      +T
Sbjct: 93  IRISALKSVFKRLNEQGYIKSNPAVDFVKLRTDEAPIFTLNHNQIKRIFRVV-----DKT 147

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
            +   R+   + L+  CGLR++E   L   +I  D  T+ + G  +K R    +P  +K 
Sbjct: 148 TYAGYRDYCAMLLMLHCGLRVNEVNQLEANDIDFDNLTIMLAGAKNKNRKTRAVPMTKKV 207

Query: 210 ILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST--TAHTLR 266
             E   L             +F    GK ++  + ++ + +     GL      + H+LR
Sbjct: 208 AEELRMLIDESREYFEGVTNVFLTQEGKVIDNDLLRKRMYRYGTLAGLLKECRPSPHSLR 267

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           H+FAT+ L NGG + ++  I+GH  ++TT  Y  +N +   +   ++  +
Sbjct: 268 HTFATNFLRNGGSVNALMRIMGHADITTTMRYVRLNDEAVKEQYEKVAAK 317


>gi|187934545|ref|YP_001886950.1| phage integrase [Clostridium botulinum B str. Eklund 17B]
 gi|187722698|gb|ACD23919.1| phage integrase [Clostridium botulinum B str. Eklund 17B]
          Length = 335

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/306 (19%), Positives = 125/306 (40%), Gaps = 24/306 (7%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           ++V  ++ ++ Q +L   ++E GLS  TL +Y+    +   +           +    +S
Sbjct: 52  DLVCSDIEEKAQLYLACKKLE-GLSSKTLYNYKLFLNKLDQYFT---------KPCSTIS 101

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
             ++R F++    +     ++   ++ +K+F  +L+  +   ++    ++  K    +  
Sbjct: 102 TMDLRMFLA-LLGKGKKASTVNGYITYLKNFFGWLQNEEYIIKNPAFKLKQAKVPKVILE 160

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
               +    L +                  A+  LL     RISE  ++  Q+I  ++ +
Sbjct: 161 GYKAENLEKLREACETKRE----------KALFELLDSTACRISEIQNIKLQDINWNEKS 210

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           +++ GKG K RIV      + A+  Y      D N       F       L     Q+ I
Sbjct: 211 IKVTGKGSKERIVYFSTRAKLALENYLKSRNDDNNSLFISKKFHNRT---LGVRSLQKTI 267

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++++   G+      H  R + AT LL+ G  +  +Q ILGH   +TTQIY  ++ +N  
Sbjct: 268 KKIKERSGVTERVHTHKFRRTQATRLLNQGMRIEGVQGILGHTTPTTTQIYAQLSQENLK 327

Query: 308 DWMMEI 313
           +    +
Sbjct: 328 NEYRRL 333


>gi|25986875|gb|AAN16061.1| integron integrase [Pseudomonas stutzeri]
          Length = 320

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/315 (22%), Positives = 126/315 (40%), Gaps = 60/315 (19%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSLKRSL 92
            T + Y    ++F+ F  +   +++  Q        EI AF+++    + +   +  ++L
Sbjct: 23  RTERVYCEWVKRFIRFHQYRHPQEMGAQ--------EIEAFLTELAVARNVSASTQNQAL 74

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           S +    K +          + ++   KK   LP  L  ++  + +  +           
Sbjct: 75  SALLFLYKEVLS---IDLPWLADVVRAKKPQRLPVVLTVEEVRSALAQLESEP------- 124

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAIL 211
                 +  LLYG G+R+ EAL L  +++   +  + I+ GKG K R+  L  S+ + + 
Sbjct: 125 ----WLVCSLLYGTGMRLMEALRLRVKDVDFSRHEILIRDGKGMKDRVTMLPRSLVQPLR 180

Query: 212 ------------------------------------EYYDLCPFDLNLNIQLPLFRGIRG 235
                                               E+     F  +     P    +R 
Sbjct: 181 RHLAVVKAIHDSEREQGRGDVWLPFALARKYPKAPKEWGWQYVFPASGLSVDPRSGVVRR 240

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             L+    QR  ++  R   +    T HTLRHSFATHLL +G D+R++Q +LGH  + TT
Sbjct: 241 HHLDEKRIQRAFKRAVRGASIVKPATPHTLRHSFATHLLESGQDIRTVQELLGHSDVKTT 300

Query: 296 QIYTNVNSKNGGDWM 310
            IYT+V ++ G   +
Sbjct: 301 MIYTHVLNRGGLSVL 315


>gi|291525804|emb|CBK91391.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 261

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/267 (25%), Positives = 123/267 (46%), Gaps = 17/267 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L    +N+++    ++ L   TL++Y+ D RQF         E+I+I  I  ++ + + +
Sbjct: 4   LETRIKNYIEYCTAQKRLDTKTLKAYKIDLRQF--------SEQISITEIEYITTSVLES 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEK 132
           +I+    Q    +S+KR ++ IK+F  YL+ + I   +    ++   ++   LP+ +  K
Sbjct: 56  YITNLHQQ-YSPKSVKRKIASIKAFFHYLEYKDIIILNPFNKLQIKFREPVILPKTIPLK 114

Query: 133 QALTLVDNVLLH----TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
               L +         TS   K    R+ A+L LL+  G+RISE  S+  QN+    + +
Sbjct: 115 TLEVLFNAAYAKYHKTTSPCQKRKTLRDIAVLELLFATGIRISELCSILLQNMDLQNNII 174

Query: 189 RIQGKGDKIRIVPLL-PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
            I GKG K R++ +  P+V   + +YY      ++       F    G  L+    +  I
Sbjct: 175 LIHGKGSKERLIHICDPNVLNILNQYYTEYYSQISA--CGYFFVNNTGNRLSDQSVRDMI 232

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLL 274
            +  R   +    T H  RH+FA ++L
Sbjct: 233 NKYCRIADIDYHITPHMFRHTFAMNIL 259


>gi|77360404|ref|YP_339979.1| integrase [Pseudoalteromonas haloplanktis TAC125]
 gi|76875315|emb|CAI86536.1| putative integrase [Pseudoalteromonas haloplanktis TAC125]
          Length = 308

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 75/317 (23%), Positives = 130/317 (41%), Gaps = 65/317 (20%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRS 87
           +  +K T+++Y      ++ F          +Q    +  T++  +++    +Q +   +
Sbjct: 4   KRYAKSTIEAYLFWIAAYIRFN--------NMQHPSSMGDTQVELYLNHLVNSQNVAQGT 55

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALTLVDNVLLHT 145
             ++L+ +    K     +I      L++  +K  +   LP  L + +   L  + +   
Sbjct: 56  QAQALNALSFLYK-----EIIKSPLSLSLDFVKSERPRKLPIVLTQTEVSALFKHCITK- 109

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLP 204
                     +     LLYG G+R+ E L L  Q+I  D + +RI  GKG K R+V L  
Sbjct: 110 ----------HYLACALLYGSGMRLMEVLRLRIQDIDFDYNCVRIWDGKGGKNRVVTLAG 159

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGI------------------------------- 233
            +   I     L    L L++  PLF G+                               
Sbjct: 160 ELIPQIRTQIQLVDNYLQLDLNNPLFCGVYMPHLLRKKYPNHNKQLGWQYLFPSYKLSID 219

Query: 234 ------RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                 R   ++    QR +++      +    T HTLRHSFATHLL +G D+R++Q+ L
Sbjct: 220 PESKQLRRHHIDEKQLQRAVKKAAFNAHINKHVTPHTLRHSFATHLLQSGADIRTVQTQL 279

Query: 288 GHFRLSTTQIYTNVNSK 304
           GH  + TTQIYT+V  +
Sbjct: 280 GHSDIRTTQIYTHVLQQ 296


>gi|319427384|gb|ADV55458.1| integron integrase [Shewanella putrefaciens 200]
          Length = 319

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 78/326 (23%), Positives = 131/326 (40%), Gaps = 61/326 (18%)

Query: 21  WLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +L  L+ E   RG S  T ++Y    + F+ F      E +  + + Q        F++ 
Sbjct: 7   FLSGLQEEMRMRGYSIRTEKTYLYWIKAFINFHNKRHPETMGTEEVTQF-----LTFLAN 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +R   +   + K +L+ +    +     ++      L      K   LP  L+  +   +
Sbjct: 62  QR--NVAINTQKIALNALAYLYQKHLHHELGD----LGFCYATKQRHLPTVLSPSEISLI 115

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDK 196
           ++            +D R+  I+ LLYG GLR+SE L L  Q+I  + ++L ++ GKG K
Sbjct: 116 LNE-----------LDGRDRLIIELLYGSGLRVSECLRLRIQDIDIESASLTVRDGKGHK 164

Query: 197 IRIVPLLPSVRKAILEYY-----------------------------------DLCPFDL 221
            R   L     + +  Y                                     +  F  
Sbjct: 165 DRQTILSHRCAEKLTTYIEKAIKIQQNDNQQGIGPSLPNALARKYPNAFRQHGWMFIFPS 224

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
           +     P    +    L+  V ++ +    R + +    T HT RHSFATHLL  G D+R
Sbjct: 225 STTCINPYTGTLCRHHLHQSVIRKALGNAVRNIQMNKRVTCHTFRHSFATHLLQAGRDIR 284

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGG 307
           S+Q +LGH  +STTQIYT+V  ++  
Sbjct: 285 SVQELLGHNDVSTTQIYTHVLGQHFA 310


>gi|58584819|ref|YP_198392.1| integrase [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|58419135|gb|AAW71150.1| Integrase [Wolbachia endosymbiont strain TRS of Brugia malayi]
          Length = 392

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 115/395 (29%), Positives = 173/395 (43%), Gaps = 87/395 (22%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE--------KITIQTIR 64
           +L    +NW + L   R  S  TL+SY  D + F+ FL+ +  E        K+++  +R
Sbjct: 2   DLGPIIENWHEWLRCYRSYSSNTLESYMRDLKDFISFLSAHIGEEVNVGSLEKLSVPELR 61

Query: 65  QL----------------SYTEIRAFISKRR-------------TQKIGDRSLKRSLS-- 93
                             + + IR F    +             ++ I  R+L ++LS  
Sbjct: 62  SWFSFRYARGINARSNTRALSVIRNFFKYIKNNYEVNNEAVFSLSRPIQRRTLPKALSIS 121

Query: 94  ---GIKSFLKYLKKRKITTESNILNMRNLKKSN------------SLP------------ 126
               +  F  +    + T  S        KK +            SLP            
Sbjct: 122 DIKTLVDFFLHNYSLQETHSSLSFQYATKKKESVLSTQLYKHCNFSLPGFQCSDTRKLII 181

Query: 127 --RALNEKQALTLVDNVLLHTSHET------------KWIDARNSAILYLLYGCGLRISE 172
             R L+ K  + ++       + +T             WI  R  AI+ LLYG GLRISE
Sbjct: 182 NKRTLSIKNWIPVLSIGTTEGNTKTSVKEIKLLDLGEPWIIKREIAIIVLLYGTGLRISE 241

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
           AL+L   +I ++  +L + GKGDK R V +LP V+  I EY   CP+    N    LF G
Sbjct: 242 ALNLKVSDISNE--SLIVTGKGDKQRQVFILPVVKMFIQEYVKACPYLSVNNEAQHLFVG 299

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +RGK L        ++++RR L LP   + H  RHSFATHLL    D+R IQ +LGH  L
Sbjct: 300 VRGKKLGRTYVANRLQKIRRMLNLPEIVSPHAFRHSFATHLLQENVDIRFIQQLLGHSSL 359

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
            TTQ+YT++N ++  + M + + Q+     +KDKK
Sbjct: 360 ETTQVYTHLNYQDVFN-MYKNFQQS----LEKDKK 389


>gi|312109424|ref|YP_003987740.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|311214525|gb|ADP73129.1| integrase family protein [Geobacillus sp. Y4.1MC1]
          Length = 301

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 63/303 (20%), Positives = 124/303 (40%), Gaps = 19/303 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  L  E    + T+ SY      FL +      E I    I +    +I+ +IS  + 
Sbjct: 8   FIGYL-YEEAKDEKTIASYRTTVVHFLTWKEQRDGEYI----IEETRPIDIKEYISYLKH 62

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS----LPRALNEKQAL 135
           Q K    ++ + ++ +K F  +L    I  ++ +  ++  K   +      + L +++  
Sbjct: 63  QCKRKPATINKYIAALKVFFAFLLSSGIIKDNPMTRIKVEKLDYANGANQTKWLTKEEQD 122

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQG 192
             +  V L      ++   RN AI+ L+   GLR++E  SL   +I     D   +  +G
Sbjct: 123 RFISYVQLE---PNEFKRLRNLAIIDLMLYSGLRVNEVSSLEINDIITKDKDVQVIIREG 179

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQL 250
           KG+K   V L+    K + ++       D +++   P LF   R         Q+ + + 
Sbjct: 180 KGNKFATVILVQKHAKNLRKWLKYRKGLDKDIHKSSPRLFVSERSPFFTERGIQKMLNKY 239

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                +    T H  RHSF  +L + G  +  I+ +  H  + TT IY   + +   + +
Sbjct: 240 AELANMD-HITPHRFRHSFCKNLANAGTPIELIRRLARHESIQTTAIYLESSQEEQIETL 298

Query: 311 MEI 313
            ++
Sbjct: 299 RKV 301


>gi|13509250|emb|CAC35342.1| integrase [Vibrio salmonicida]
          Length = 320

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 75/317 (23%), Positives = 130/317 (41%), Gaps = 65/317 (20%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRS 87
           +  +K T+++Y      ++ F          +Q    +  T++  +++    +Q +   +
Sbjct: 16  KRYAKSTIEAYLFWIAAYIRFN--------NMQHPSSMGDTQVELYLNHLVNSQNVAQGT 67

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALTLVDNVLLHT 145
             ++L+ +    K     +I      L++  +K  +   LP  L + +   L  + +   
Sbjct: 68  QAQALNALSFLYK-----EIIKSPLSLSLDFVKSERPRKLPVVLTQTEVSALFKHCITK- 121

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLP 204
                     +     LLYG G+R+ E L L  Q+I  D + +RI  GKG K R+V L  
Sbjct: 122 ----------HYLACALLYGSGMRLMEVLRLRIQDIDFDYNCVRIWDGKGGKNRVVTLAG 171

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGI------------------------------- 233
            +   I     L    L L++  PLF G+                               
Sbjct: 172 ELIPQIRTQIQLVDNYLQLDLNNPLFCGVYMPHLLRKKYPNHNKQLGWQYLFPSYKLSID 231

Query: 234 ------RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                 R   ++    QR +++      +    T HTLRHSFATHLL +G D+R++Q+ L
Sbjct: 232 PESKQLRRHHIDEKQLQRAVKKAAFNAHINKHVTPHTLRHSFATHLLQSGADIRTVQTQL 291

Query: 288 GHFRLSTTQIYTNVNSK 304
           GH  + TTQIYT+V  +
Sbjct: 292 GHSDIRTTQIYTHVLQQ 308


>gi|328474785|gb|EGF45590.1| site-specific recombinase IntIA [Vibrio parahaemolyticus 10329]
          Length = 320

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 79/321 (24%), Positives = 129/321 (40%), Gaps = 61/321 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           R  +  T++SY    ++F++F          +    +LS  ++  F+S     +K+  ++
Sbjct: 16  RHYANKTIESYLFWIKRFIVFHQ--------LAHPSKLSEDDVIRFLSHLAIDEKVAVKT 67

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
              +L+ I    +   K  ++ +   +  +       LP  L   +    V +       
Sbjct: 68  QALALNAISFLYRDFFKTPLSLD---MRFQKSLTEKKLPVVLTRDEVRRFVQH------- 117

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
               ID R    + LLYG GLRI E L L  Q+I      +R+ QGKG K R V L   +
Sbjct: 118 ----IDPRYKLHIQLLYGSGLRIMECLRLRIQDIDYYYGAVRVWQGKGGKNRTVTLAKEL 173

Query: 207 RKAILEYYDLCPFDLNLNIQLP--------------------------LFRGI------- 233
            + +    +L       +  +P                          LF          
Sbjct: 174 HEPLKSQMNLARNYYFKDRHVPGYAGVYISEGLRRKYPNAELDFNWHFLFPSNKLSVDKE 233

Query: 234 ----RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
               R   +N    QR +++      +  + T HTLRHSFATHLL +G D+R++Q  LGH
Sbjct: 234 TGQLRRHHINESAIQRAVKRSALDASIEKTVTCHTLRHSFATHLLESGADIRTVQEQLGH 293

Query: 290 FRLSTTQIYTNVNSKNGGDWM 310
             + TTQIYT+V  +  G  +
Sbjct: 294 TDVKTTQIYTHVIERGAGGVL 314


>gi|331085647|ref|ZP_08334730.1| hypothetical protein HMPREF0987_01033 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406570|gb|EGG86075.1| hypothetical protein HMPREF0987_01033 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 322

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/306 (21%), Positives = 121/306 (39%), Gaps = 28/306 (9%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E+ + E L   Q +L    IE G S+ T+Q Y     + L  +            +R++S
Sbjct: 41  EVTNDEYL---QLFLDAKRIE-GCSERTIQYYSVTVDKMLQKIQ---------TPVRKIS 87

Query: 68  YTEIRAFI-SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
             EIR ++   ++       ++      I SF  +L++     +S +  +  +K    + 
Sbjct: 88  TEEIRKYLVDYQKINDCSKVTVDNVRRNISSFFSWLEEEDYILKSPMRRIHKIKTKQPVK 147

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             ++++    L D+              R+ A++ LLY  G+R+ E ++L   ++  +  
Sbjct: 148 EIISDEAIEMLRDHC----------QCPRDLAMIDLLYSTGIRVGELVNLNISDVDFEAR 197

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
              + GKGDK R V      +  +L Y        + N  L +        L     +  
Sbjct: 198 ECVVFGKGDKERRVYFDAKAKLHLLNYLSER---KDNNPALFVTLDAPYDRLKISGVEIR 254

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           IR L R L +      H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN  N 
Sbjct: 255 IRTLGRKLNMEK-IHPHKFRRTMATRAIDKGMPIEQVQKLLGHSQIDTTMQYAIVNQTNV 313

Query: 307 GDWMME 312
                +
Sbjct: 314 KTSHQK 319


>gi|16197749|gb|AAK95987.1| site-specific tyrosine recombinase [Vibrio cholerae O1 biovar El
           Tor]
          Length = 362

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/334 (21%), Positives = 138/334 (41%), Gaps = 63/334 (18%)

Query: 18  RQNWLQNLE---IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           R  +L+++      +  S  T ++Y    ++F++F      + +  Q        E+  F
Sbjct: 46  RSPFLESIRQVMRTKHYSIQTEKTYLLWIKRFILFNKKQHPKNMGEQ--------EVTNF 97

Query: 75  ISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++     +++   +   +L  I    K++ +R++T   + +  R  K    +P  L+  +
Sbjct: 98  LTYLAVNRQVTASTQNLALCAIVFMYKHILQRELTLLPDTIKARAPK---RVPSVLSHNE 154

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QG 192
           A+++++            +      +  LLYGCGLR +E L L  ++I  +   + + +G
Sbjct: 155 AMSIINQ-----------LSGSYKLMFSLLYGCGLRKAELLMLRVKDIDFESRNVYVFRG 203

Query: 193 KGDKIRIVPLLPSVRK------------------------------------AILEYYDL 216
           KG K R+  L   + +                                    AI ++   
Sbjct: 204 KGGKDRVKMLPEKLVEPLKLHIEKVRDLHEKDLCEGEGKTSLPSGLARKYPYAISDFKWQ 263

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
             F  ++  + P+   +    L+     + +R      G+    TAH  RHSFAT LL  
Sbjct: 264 FIFPSSVRCKHPVDGYVCRHHLHWTSLTKKLRSAVIRSGVQKHVTAHIFRHSFATQLLKA 323

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           G D+R++Q +LGH  L TTQIYT+V  ++    +
Sbjct: 324 GTDIRTVQELLGHSDLKTTQIYTHVIGQHSSGTI 357


>gi|291459078|ref|ZP_06598468.1| site-specific recombinase, phage integrase family [Oribacterium sp.
           oral taxon 078 str. F0262]
 gi|291418332|gb|EFE92051.1| site-specific recombinase, phage integrase family [Oribacterium sp.
           oral taxon 078 str. F0262]
          Length = 364

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 75/354 (21%), Positives = 138/354 (38%), Gaps = 42/354 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQ--NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-- 56
           M+ +N  ++    LL+E   + +     IE   S  T  +Y  D R F  FLA    E  
Sbjct: 9   MDRDNTLKLRG--LLQELPPFCRCFFRAIEPRTSSRTRIAYAYDLRVFFQFLADSVPELS 66

Query: 57  -----KITIQTIRQLSYTEIRAFISKRRTQ----------KIGDR-------------SL 88
                K  +  I  L    +  ++   + +          +   R             S+
Sbjct: 67  GKPIEKFVLSDIAGLPVLRLEEYMEYLKYRVREQEELPEDRASGRKGKGKIEILNHEQSI 126

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL------ 142
           KR +S +KSF KYL + ++ +E     +   K  +     L+E +   L+D         
Sbjct: 127 KRKISSLKSFYKYLYRDQLISEDTASLLILPKLRDREIIRLDENEVADLLDTAESGEKLT 186

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
                  +    R++AIL L+ G G+R+SE + L  Q++  +   +RI  KG K   V  
Sbjct: 187 ERQQRFHEKTALRDTAILSLMLGTGIRVSECVGLNIQDLDLNSDGIRIHRKGGKEVTVYF 246

Query: 203 LPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
              V + +  Y         L+  +  LF  ++ K +     +  +++    +      T
Sbjct: 247 SDEVERILSSYLKARKKMPALSSSEDALFLSLQKKRIGVRAVENMVKKYASAVTPLKHIT 306

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIY 314
            H LR ++ T+L    GD+  +  +LGH  ++TT + Y  +  +        ++
Sbjct: 307 PHKLRSTYGTNLYRETGDIYLVADVLGHEDVNTTKKHYAALEEERRRSARNRVH 360


>gi|257867811|ref|ZP_05647464.1| site-specific recombinase [Enterococcus casseliflavus EC30]
 gi|257801894|gb|EEV30797.1| site-specific recombinase [Enterococcus casseliflavus EC30]
          Length = 182

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 65/183 (35%), Positives = 89/183 (48%), Gaps = 7/183 (3%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           L  +    + +  RN A+L +LYG GLR+SE  SLT   I  +   L I GKG+K R VP
Sbjct: 4   LFQSVAGDEPLQQRNQALLEVLYGSGLRVSECSSLTLGAIDWESGVLLIHGKGNKDRYVP 63

Query: 202 LLPSVRKAILEYYDLCP---FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
                + A+  Y         +        LF    G  +     +  + Q+ R   L  
Sbjct: 64  FGSYAQAAVKRYLSSGRKQLMEKQNKEHEVLFVNHLGDGITATGIEYVLNQIIRKSSLDS 123

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRH+FATHLL+NG D+R++Q +LGH  LSTTQIY +V      D + + Y Q H
Sbjct: 124 KIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVT----KDSLQKNYRQFH 179

Query: 319 PSI 321
           P  
Sbjct: 180 PRA 182


>gi|296132971|ref|YP_003640218.1| integrase family protein [Thermincola sp. JR]
 gi|296031549|gb|ADG82317.1| integrase family protein [Thermincola potens JR]
          Length = 282

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 68/275 (24%), Positives = 114/275 (41%), Gaps = 32/275 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSL 88
           G S  T   Y    + F              + +  + Y E+R F+    TQ K+    +
Sbjct: 16  GFSPKTHDDYLRHVKHFQKHFG---------KPLEHMGYDEVREFLHHAITQRKLSCSYV 66

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            ++ S I+ F + +    +  + N+  +  +K+  +LP  L+  +   + +         
Sbjct: 67  NQTYSAIRFFYETV----LGWDWNMKQVPRVKREKTLPAVLSIDEVKAIFNVTK------ 116

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVR 207
               + ++ AIL   Y  GLR+ E   L   +I      + I+ GKG K R   L P+  
Sbjct: 117 ----NIKHKAILMTTYAAGLRVGEVTRLKISDIDSKNMQILIKLGKGKKARYSLLSPANL 172

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
             + +Y+              LF G    KP++    Q+     +   G+    + HTLR
Sbjct: 173 SILRQYWRQY------RPSYWLFPGKPSDKPISVRTVQQIFYDAKVLAGIQKDVSIHTLR 226

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H FATHLL  G D+  IQ +LGH  + TT IY ++
Sbjct: 227 HCFATHLLEAGTDILHIQQLLGHTSIHTTCIYLHL 261


>gi|114047627|ref|YP_738177.1| integron integrase [Shewanella sp. MR-7]
 gi|113889069|gb|ABI43120.1| integron integrase [Shewanella sp. MR-7]
          Length = 319

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 78/326 (23%), Positives = 132/326 (40%), Gaps = 61/326 (18%)

Query: 21  WLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +L +L+ E   RG S  T  +Y    + F+ F      E +  + + Q        F++ 
Sbjct: 7   FLSSLQEEMRMRGYSIRTETTYLYWIKAFINFHGKRHPETMGTEEVTQF-----LTFLAN 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +R   +   + K +L+ +    +     ++      L      K   LP  L+  +   +
Sbjct: 62  QR--NVAINTQKIALNALAYLYQKHLHHELGD----LGFCYATKQRHLPTVLSPSEISLI 115

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDK 196
           ++            +D R+  I+ LLYG GLR+SE L L  Q+I  ++++L ++ GKG K
Sbjct: 116 LNE-----------LDGRDKLIIELLYGSGLRVSECLRLRIQDIDIERASLSVRDGKGHK 164

Query: 197 IRIVPLLPSVRKAILEYY-----------------------------------DLCPFDL 221
            R   L     + +  Y                                     +  F  
Sbjct: 165 DRQTILSHRCAEKLTTYIEKAIKTQQNDNLRGIGPSLPNALERKYPNAFRQHGWMFIFPS 224

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
           +     P    +    L+  V ++ +    R + +    T HT RHSFATHLL  G D+R
Sbjct: 225 STTCINPYTGTLCRHHLHQSVIRKALGNAVRNIQMNKRVTCHTFRHSFATHLLQAGRDIR 284

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGG 307
           S+Q +LGH  +STTQIYT+V  ++  
Sbjct: 285 SVQELLGHNDVSTTQIYTHVLGQHFA 310


>gi|227461196|gb|ACP39543.1| putative integron integrase [uncultured microorganism]
          Length = 319

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/311 (22%), Positives = 120/311 (38%), Gaps = 60/311 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           RGL+  T   Y    R+F++                ++   E+  F+++   Q  +   +
Sbjct: 31  RGLAIRTEDVYVSWIRRFILANGKRHP--------SEMGEREVEWFLTRLAVQGKVAAST 82

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++LS +    + +  + +     + N+R  K+   LP  L  ++   L+  +      
Sbjct: 83  QNQALSALLFLYREVLGQDL---PWMENIRRAKRPERLPVVLTIEEVSRLLVQM------ 133

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
                   +  +   LYG G+R+ E + L  Q+I   +  + + +GKG K R   L    
Sbjct: 134 -----SGIHHLMASPLYGSGIRLMECVRLRVQDIDFVRREILVRRGKGGKDRRTMLPARA 188

Query: 207 RKAI------------------------------------LEYYDLCPFDLNLNIQLPLF 230
             A+                                     E+     F   L    P  
Sbjct: 189 VPALQLHLAQTRMLHERDLGVGHGSVWLPGALARKYPAAAREWIWQYVFPSRLRSVDPRS 248

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
              R   ++    QR +R   +  G+    T HTLRHS ATHLL +G D+R+IQ +LGH 
Sbjct: 249 GVERRHHVDEKNLQRAVRIAAQAAGIAKHATCHTLRHSLATHLLESGSDIRTIQELLGHA 308

Query: 291 RLSTTQIYTNV 301
            +STT IYT+V
Sbjct: 309 DVSTTMIYTHV 319


>gi|258623268|ref|ZP_05718275.1| site-specific recombinase IntI [Vibrio mimicus VM573]
 gi|258584454|gb|EEW09196.1| site-specific recombinase IntI [Vibrio mimicus VM573]
          Length = 320

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 79/327 (24%), Positives = 136/327 (41%), Gaps = 62/327 (18%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           ++++  R  +K T+++Y     +++ F        +  +        E+  F++      
Sbjct: 11  EHMQT-RFYAKKTIEAYLHWITRYIYFHNKKHPSLMGDK--------EVELFLTHLAVNG 61

Query: 83  -IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +  ++   +L+ +    K + K  ++ E   +  +  +    LP  L   +   L+D  
Sbjct: 62  NVAAKTQSLALNSLSFLYKEILKTPLSLE---IRFQRSQLERKLPVVLTRDEIRCLLDV- 117

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV 200
                     +D +      LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V
Sbjct: 118 ----------VDPKYQLPAKLLYGSGLRLMECIRLRVQDIDFDYGAIRIWQGKGGKNRTV 167

Query: 201 PLLPSVR-----------------------------KAILEYYDLCPFDLNLNIQLPLFR 231
            L   +                               A+ E Y   P++   +   P F+
Sbjct: 168 TLAKELYPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQ 227

Query: 232 --------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                    +R   +N  V QR +R+  +  G+  + T HTLRHSFATHLL  G D+R++
Sbjct: 228 LSLDPESDVMRRHHMNETVLQRTVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTV 287

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWM 310
           Q  LGH  + TTQIYT+V ++     +
Sbjct: 288 QEQLGHTDVKTTQIYTHVLNRGASGVL 314


>gi|55981508|ref|YP_144805.1| putative phage integrase/recombinase [Thermus thermophilus HB8]
 gi|55772921|dbj|BAD71362.1| putative phage integrase/recombinase [Thermus thermophilus HB8]
          Length = 293

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 68/309 (22%), Positives = 126/309 (40%), Gaps = 27/309 (8%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +    + WL +    RGLS  T+  Y    +  +        + +  + + +L+  ++RA
Sbjct: 5   ITDWAEAWLLDCRA-RGLSPNTIGYYRDAVKAMV--------KVVGDKPMAELTADDLRA 55

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEK 132
           F+ K     +    +       ++F+++  K           +R  K   + LP  + E 
Sbjct: 56  FLVKSFEDGLSPGGVAARWRAARAFVRWAVKEGALGVDPTGKIRPPKVPEADLP-VVREW 114

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L+       + E      R+ A++ +L+  GLR SE L L   ++  +   +R++ 
Sbjct: 115 EVKKLL------AAAEMGKNPLRDKALVMVLWDTGLRASEVLGLRVSDVKAEA--VRVRR 166

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG  ++ VP+     +AIL Y      +   +    LF    G PL     +  +R+L  
Sbjct: 167 KGGAVQWVPVSLPTYRAILAY---ARAERPPSDHDALFLTRSGLPLAYDGLKMVLRRLAE 223

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           Y GLP     H  R   A  ++ NG    ++Q++LGH     T  Y  +  K+    + E
Sbjct: 224 YAGLPPKP-PHAFRRGAAVAMVKNGMPSYALQAMLGHKSPVMTAHYVRLAEKD----LRE 278

Query: 313 IYDQTHPSI 321
           I+    P I
Sbjct: 279 IHRTASPVI 287


>gi|227461211|gb|ACP39550.1| putative integron integrase [uncultured microorganism]
          Length = 300

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 124/311 (39%), Gaps = 60/311 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           +  S  T ++Y    ++F++F                +   ++ AF+S   T++ +   +
Sbjct: 12  KHYSLATEKNYLQWAKRFILFHGKRHP--------VDMGAPDVEAFLSALATERNVSAST 63

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             +++  I    + +          +  +   K S  LP  L +++   L+ +       
Sbjct: 64  QNQAMHAILFLYRDVLH---IDLPWLDGVTRAKVSKRLPSVLTQQETAALLAH------- 113

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
               +   N  I+ +LYG G+RI E L L  ++I   +  + I+ GKG+K R   L  S+
Sbjct: 114 ----VSGTNGLIIRMLYGTGMRIKECLRLRIKDIDLARRIIVIREGKGNKDRTTMLPGSL 169

Query: 207 RKAILEYYDLCPFDLNLNIQ------------------------------------LPLF 230
              ++++ D      NL++                                      P  
Sbjct: 170 ADDLIQHIDERLRWHNLDLSTGHADVELPDAIARKYPRAASEWAWQYVFAAPTYSTDPRT 229

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +R         QR ++   +   +      HTLRHSFATHLL  G D+R++Q +LGH 
Sbjct: 230 GSVRRHHWCERNIQRAVKVAAQQARIHKLVHPHTLRHSFATHLLETGSDIRTVQELLGHS 289

Query: 291 RLSTTQIYTNV 301
            +STT IYT+V
Sbjct: 290 DVSTTMIYTHV 300


>gi|299538026|ref|ZP_07051312.1| hypothetical protein BFZC1_18510 [Lysinibacillus fusiformis ZC1]
 gi|298726608|gb|EFI67197.1| hypothetical protein BFZC1_18510 [Lysinibacillus fusiformis ZC1]
          Length = 293

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/307 (23%), Positives = 118/307 (38%), Gaps = 27/307 (8%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
            P   + E++ E   +L +L++    S  T+++Y     +F              ++   
Sbjct: 11  FPNSANQEVVGE---FLLSLKLA-NCSVETVRTYRWYLEKFFENRE---------ESFLT 57

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           LS   I  +  K    K  D ++K  L  + SF  +    ++  +S I      +    +
Sbjct: 58  LSSDTIHQWFQKYDGVK-SDATVKLRLCILSSFYNFCVIEELLEKSPIKTRWLPRLPQPI 116

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P+ L + +        L  T  +T+    RN  ++  +   G R+SE + L   ++  + 
Sbjct: 117 PQYLGKSE--------LAKTRKQTEESTLRNRVLIEFMLTSGCRVSEIVGLNQSDVDLEN 168

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            T R+ GKG KIR V         +  Y         +     LF    GK L     Q 
Sbjct: 169 RTARVIGKGKKIREVHFSEKCAILMERYLTD-----EVKKCEALFVTANGKRLGVRGVQY 223

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +  +     L      H LRH+FAT LLS G +L  I   LGH  + TTQIY  +  + 
Sbjct: 224 IVHDIGEEAQLDKRLFPHRLRHTFATELLSKGAELSFIADELGHTDIRTTQIYARLPKQE 283

Query: 306 GGDWMME 312
                 +
Sbjct: 284 LITLYRK 290


>gi|226326689|ref|ZP_03802207.1| hypothetical protein PROPEN_00542 [Proteus penneri ATCC 35198]
 gi|225204910|gb|EEG87264.1| hypothetical protein PROPEN_00542 [Proteus penneri ATCC 35198]
          Length = 237

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 103/249 (41%), Gaps = 14/249 (5%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           N P  +   L    + +L+ +++ER LS +T+++Y          +       + I    
Sbjct: 2   NQPIDIPETLSTAIEQFLRYIQVERRLSPVTVENYHRQLMALAQMMVA-----MKITQWI 56

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            L    +R  ++K     +   SL    S ++SFL +   + +   +    +R  K    
Sbjct: 57  SLESQHVRMLLAKSNRSGLQPTSLALRFSALRSFLDWQVAQGMLEVNPAKGIRTPKSGRH 116

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP+ ++  +   L++  L         +  R+  +L ++YG GLR+SE  +L   +I  +
Sbjct: 117 LPKNMDVDEVSQLMNIDL------KDPLSVRDRTMLEVMYGAGLRLSELTNLNISDIDMN 170

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVF 243
           +  +R+ GKG K R VPL     + +  ++ +   +L       +F   +  K L+    
Sbjct: 171 EGEVRVLGKGSKERKVPLGRKALEWLQNWFPIR--ELYAPEDKAVFISTQSGKRLSVRSV 228

Query: 244 QRYIRQLRR 252
           Q+       
Sbjct: 229 QKRFELWGD 237


>gi|307826955|ref|ZP_07656735.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307732373|gb|EFO03296.1| integrase family protein [Methylobacter tundripaludum SV96]
          Length = 277

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 80/288 (27%), Positives = 124/288 (43%), Gaps = 26/288 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ  + ++ + R LS  T  SY    ++F  FL          ++    S  ++R +   
Sbjct: 12  RQRMIDDMRM-RKLSPKTQASYIRVVKRFAGFLR---------RSPDTASVEDLRRYQLH 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I   SL  +L+G+K   +    R       +  M  +   + LP  L+ ++   L
Sbjct: 62  LVDHGISPISLNATLTGLKFLFETTLDRPEL----LTKMHPVHVPHKLPVVLSREEVARL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
           +  V           + ++   L + YG GLR SE +SL   +I   + TLRI QGKG K
Sbjct: 118 IAAVD----------NLKHQTALSVAYGAGLRASEVVSLKVGDIDSQRMTLRIEQGKGSK 167

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLG 255
            R   L P + + +  ++        +     LF G+    PL+     R I        
Sbjct: 168 DRYAMLSPVLLERLRAWWKFAHAQGKMLQGGWLFPGLDPIDPLSTRQLNRAIHAAAEAAR 227

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +    + HTLRHSFATHLL    D+R IQ +LGH +L TT +Y  V +
Sbjct: 228 IDKRVSMHTLRHSFATHLLEQKVDIRVIQVLLGHKKLETTALYAQVAT 275


>gi|167623565|ref|YP_001673859.1| integron integrase [Shewanella halifaxensis HAW-EB4]
 gi|167353587|gb|ABZ76200.1| integron integrase [Shewanella halifaxensis HAW-EB4]
          Length = 320

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 76/319 (23%), Positives = 132/319 (41%), Gaps = 59/319 (18%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           +++ + RG S  T ++Y    + F+ F     ++K   +T+ Q   T+  +F++   ++ 
Sbjct: 14  EHMRM-RGYSIKTEKAYLYWIKAFINF-----QQKRHPETMGQAEVTQFLSFLA--NSRN 65

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +   + K +L+ +        K+ +      L  R   K   LP  L+ ++   ++    
Sbjct: 66  VAINTQKVALNALVYLYHKHLKQDLGD----LGFRYATKQRQLPIVLSTEEVSEVLCQ-- 119

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVP 201
                    ++ R+  I+ LLYG GLR+SE L L  Q+I   + +L ++ GKG K R   
Sbjct: 120 ---------LNGRDQLIVQLLYGSGLRVSECLRLRIQDIDLARCSLTVRNGKGHKDRQTI 170

Query: 202 LLPSVRKAILEYY-----------------------------------DLCPFDLNLNIQ 226
           L       +  Y                                     +  F       
Sbjct: 171 LSQKCAIKLPAYIDAARAIQIKDNTYCIGPSLPNALERKYPNAFRQAGWMFVFPSTTTSD 230

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
            P  +      L+  V ++ +    R   +    T HT RHSFATHLL  G D+R+IQ +
Sbjct: 231 NPYTKTHCRHHLHQSVIRKALAAAVRKTHIIKRVTCHTFRHSFATHLLQAGRDIRTIQEL 290

Query: 287 LGHFRLSTTQIYTNVNSKN 305
           LGH  ++TTQIYT+V  ++
Sbjct: 291 LGHNDVNTTQIYTHVLGQH 309


>gi|254478357|ref|ZP_05091736.1| site-specific recombinase, phage integrase family
           [Carboxydibrachium pacificum DSM 12653]
 gi|214035715|gb|EEB76410.1| site-specific recombinase, phage integrase family
           [Carboxydibrachium pacificum DSM 12653]
          Length = 306

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/306 (20%), Positives = 143/306 (46%), Gaps = 14/306 (4%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             Q +L++ +  + L+++T++ YE   + F  ++    +    I  I  +    I+A++S
Sbjct: 6   AIQEFLEDRKF-KNLTEITVKGYERSLKAFHDYIIQQHQ----ILNIEDVRPYHIKAYLS 60

Query: 77  KRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            R+ + K    ++   +  +K+F  Y  K ++  E+ +     ++K+++      +    
Sbjct: 61  YRKKELKNNAETINHEIRNLKAFFNYFVKERVINENPVT--VPVQKTDTKIETFTDYHIR 118

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            ++            +   R   ++ +L G G+R+ E  +L  ++I    + + + GKG 
Sbjct: 119 QMLRYYRKQKQRGDNFYAYRGYIMILILLGTGIRLGEMCNLRWKDIDFVNAKMTVIGKGR 178

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           + R +PL  +++K ++E+       L N+     +     GK +N    + + ++L++ +
Sbjct: 179 RQRTIPLTDNLKKELMEWRFYVEKKLGNVTEDSFVIPTQTGKRMNENSVKTFFQRLKKIM 238

Query: 255 GL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
               +  + HT RH+FA   + +GGD+ S+Q ILGH  +  T  Y N+     G  + E 
Sbjct: 239 NFRDVRLSPHTFRHTFAKQWILSGGDVFSLQRILGHSTIEVTNKYVNL----FGSALKEQ 294

Query: 314 YDQTHP 319
            D+ +P
Sbjct: 295 NDKFNP 300


>gi|257125272|ref|YP_003163386.1| integrase [Leptotrichia buccalis C-1013-b]
 gi|257049211|gb|ACV38395.1| integrase domain protein SAM domain protein [Leptotrichia buccalis
           C-1013-b]
          Length = 284

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/302 (23%), Positives = 127/302 (42%), Gaps = 27/302 (8%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           + +N+L+ L+ E+  S+ TL  Y  D  QF +F+          +   ++   EI ++I 
Sbjct: 2   QLKNFLEFLKFEKRSSQNTLNGYNRDLTQFFLFVK---------KDFSEIGEKEISSYID 52

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               +K+   S+ R +S +K+F K+    K+ T+     ++NLK+    P  L  ++   
Sbjct: 53  NL-NKKLRKNSVLRKVSVLKTFYKFCYLNKLITKDPAGIIKNLKREYQPPETLTLEEIKQ 111

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGD 195
           +VDN              +N  I+ LL   G  ISE L+L  ++I       ++  GK  
Sbjct: 112 IVDNC------PNTPAGIQNRLIIKLLIVTGAMISEILNLKIKDIENQYDKFIKTLGKNS 165

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           K +I  +  S    I  Y ++    L N N  L +F  IR +      F + ++ + +  
Sbjct: 166 KYQIKLIDNSFEIEIKNYLEIYRPKLKNANESLKIFPDIRREK-----FWKNLKIIAQNA 220

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            +  +   H  R+S    L     D+  IQ +LG   ++T      +        +  IY
Sbjct: 221 KIEKNVYPHIFRNSLVGILSEANADICIIQEVLGKVNITT----AKIKKNVEKSKLKMIY 276

Query: 315 DQ 316
           + 
Sbjct: 277 NN 278


>gi|108802537|ref|YP_642733.1| phage integrase [Mycobacterium sp. MCS]
 gi|108772956|gb|ABG11677.1| phage integrase [Mycobacterium sp. MCS]
          Length = 344

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 75/353 (21%), Positives = 134/353 (37%), Gaps = 74/353 (20%)

Query: 15  LKERQNWLQNLE-IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +   + +L+ L  IER  S  T+++Y  D + +  FLA              +   ++ A
Sbjct: 1   MAPIERYLRYLTDIER--SPNTIKAYAHDLKDWFTFLAGRGP------DWTAVQLEDVGA 52

Query: 74  FISKRR----------------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTES------ 111
           F+S  R                    G+ ++ R LS + +F  Y  +  +          
Sbjct: 53  FVSWLRLPMALRQSGIVMLPTMEHHCGEATVNRKLSALAAFYTYAARDGVAVGELLTTWQ 112

Query: 112 ---------NIL-----------NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
                      L            M  LK +  LPR L   +A  ++D+           
Sbjct: 113 VGGSRGGWKPFLHHVSNRMPRSRRMVTLKTAKKLPRILTPVEAQAVLDSCDR-------- 164

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---------KGDKIRIVPL 202
              R+  +L +LY  G+R+ EAL L   +I   +  + I+          K    R VP+
Sbjct: 165 --LRDRFLLAVLYDTGMRVGEALGLRHSDIAAAECEITIRRRDNDNGARAKSVSSRTVPV 222

Query: 203 LPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            P + +   +Y      DL+ + + + L+    G P         +R+LRR  G+     
Sbjct: 223 SPELIRLYADYLHDEYGDLDSDYVFVNLWGRPHGHPWTYAAVYDLVRRLRRRTGIDFD-- 280

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
            H LRH+ AT +L +G  L  +  +LGH  ++TT   Y ++  ++    + + 
Sbjct: 281 PHWLRHTAATRMLRDGIGLEVVAKLLGHANVTTTAATYGHLTVEDARKVLQQA 333


>gi|217962623|ref|YP_002341195.1| site-specific recombinase, phage integrase family [Bacillus cereus
           AH187]
 gi|229142474|ref|ZP_04270973.1| Site-specific recombinase, phage integrase [Bacillus cereus
           BDRD-ST26]
 gi|217067985|gb|ACJ82235.1| site-specific recombinase, phage integrase family [Bacillus cereus
           AH187]
 gi|228640987|gb|EEK97319.1| Site-specific recombinase, phage integrase [Bacillus cereus
           BDRD-ST26]
          Length = 322

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 62/290 (21%), Positives = 124/290 (42%), Gaps = 16/290 (5%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G  K T+  Y    R F+         ++ I+ +  ++   ++ +I+K   +++   ++ 
Sbjct: 41  GFRKRTIDDYSKLFRYFM--------RELNIEKVEIITVAHVQMYINKLLNRELAPTTVN 92

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             +S +KS  K L ++     +  ++   L+   +    LN  Q   L   V      +T
Sbjct: 93  IRISALKSVFKRLHEQGYIKSNPAVDFVKLRTDEAPIFTLNNNQIKRLFRVV-----DKT 147

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
            +   R+   + L+  CGLR++E   L   +I  D  T+ + G  +K R    +P  +K 
Sbjct: 148 TYAGYRDYCTMLLMLHCGLRVNEVNQLEVNDIDFDNFTIMLAGAKNKNRKTRAVPMTKKV 207

Query: 210 ILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST--TAHTLR 266
             E   L             +F    GK ++  + ++ + +     GL      + H+LR
Sbjct: 208 AEELRMLIDESREYFGGITNVFLTQEGKVIDNDLLRKRMYRYGTLAGLLKECRPSPHSLR 267

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           H+FAT  L NGG + ++  I+GH  ++TT  Y  +N +   +   ++  +
Sbjct: 268 HTFATSFLRNGGSVNALMRIMGHADITTTMRYVRLNDEAVKEQYEKVAAK 317


>gi|312136250|ref|YP_004003587.1| integrase family protein [Methanothermus fervidus DSM 2088]
 gi|311223969|gb|ADP76825.1| integrase family protein [Methanothermus fervidus DSM 2088]
          Length = 271

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 72/288 (25%), Positives = 129/288 (44%), Gaps = 35/288 (12%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R  S  T+++Y      FL F+     E   I   R L   +++ ++   + +   +R  
Sbjct: 19  RNYSDGTIRTYSYILNSFLRFI-----EDKEINKKRDL-IKQMKRYLVLLKRKNRSERYR 72

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
                  ++ LK L            N++  K   S+P++++EK+   L           
Sbjct: 73  HLVAVVFRNLLKTLNMD-------PNNLKTPKVPKSIPKSISEKEVKRLFKA-------- 117

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
                 R+  IL LLY  GLR+SE ++L  ++I     +++++GKG+K R+V      + 
Sbjct: 118 --AEKLRDKVILMLLYKTGLRVSELVNLKLKDIDFTDRSIKVRGKGNKERVVFFDEECKT 175

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            + +Y                    +   ++    QR +++  +   +    T H LRHS
Sbjct: 176 LLEKYIKNNS------------VNEKLIDISVRQIQRIVKKTAKKAKIKKRVTPHVLRHS 223

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +ATHLL  G ++R IQ +LGH  LSTT+IYT V +K   +   +I+++
Sbjct: 224 YATHLLEKGLNIRYIQKLLGHSSLSTTEIYTKVTNKKLKEKYDKIWNR 271


>gi|307591252|ref|YP_003900461.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306986817|gb|ADN18692.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 275

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 65/279 (23%), Positives = 128/279 (45%), Gaps = 32/279 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G SK T+++Y C  +QF+ F+          Q + +++  ++  ++++         ++ 
Sbjct: 22  GKSKTTVKTYVCHVKQFIDFMN---------QPLAEITLDDLVLWVNRL-NLTYTPPTVA 71

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLK-KSNSLPRALNEKQALTLVDNVLLHTSHE 148
             +  IKS   +  K    + +    ++  K +     + L++     L++         
Sbjct: 72  NKILCIKSLFSFCVKVGYLSFNIGALIKPPKTRDKRAEKILDQGDVKRLIEQ-------- 123

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
                 R+  +L L+Y  GLR+SEA++LT  +     + L + GKG K+R + +   + +
Sbjct: 124 --ATPGRDRVLLCLIYTTGLRVSEAVNLTWSD--LKGNKLAVYGKGSKLRFIIVPDWLLE 179

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            +              I   +F    GKP++     R I++     G+   T+AH LRHS
Sbjct: 180 QLQTL---------PKISEFIFATSTGKPIDRIFTHRMIKKCAEKAGIDPKTSAHWLRHS 230

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            A+H ++NG ++R +Q  LGH +L TT+ Y ++N  +G 
Sbjct: 231 HASHAINNGCNVRLLQESLGHSKLETTEKYLHINPNSGS 269


>gi|153955710|ref|YP_001396475.1| tyrosine recombinase [Clostridium kluyveri DSM 555]
 gi|146348568|gb|EDK35104.1| Predicted tyrosine recombinase [Clostridium kluyveri DSM 555]
          Length = 287

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 65/280 (23%), Positives = 124/280 (44%), Gaps = 17/280 (6%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           SK T+  Y    ++   +L    E+      ++ ++ T +  ++  +  + +   S  +S
Sbjct: 21  SKETITGYSNHLKRMESYL---IEKFNYPPYLQDITLTNLEEYLDSQLARGLAQASRSKS 77

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
              I+SF  Y  ++++  ++  LN+  +K        L + + + LV           K 
Sbjct: 78  YYIIRSFYNYCCRKELVEKNIALNLEPIKVKRKERTYLTKNEVIVLVQ----------KM 127

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAI 210
            +     I+  +Y  G+RISE  +L  +++      + I G KG+K R +P+  ++ K +
Sbjct: 128 ENELIKTIVMAIYHTGMRISECTNLKIKSVDFKNKVIHIIGGKGNKDRDIPISDTLNKIL 187

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            +Y      ++N N     F       ++P    R I +  + LG     +AH LRHSFA
Sbjct: 188 TKYIKNERLEVNSN---YFFATKASGRISPQHINRQINETVKRLGWEKHVSAHILRHSFA 244

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           + L+    +L  IQ +LGH  L  T IYT+ + +     +
Sbjct: 245 SKLIQQEVNLVKIQKLLGHSDLRVTSIYTHTSKEELRQAV 284


>gi|239828404|ref|YP_002951028.1| integrase [Geobacillus sp. WCH70]
 gi|239808697|gb|ACS25762.1| integrase family protein [Geobacillus sp. WCH70]
          Length = 301

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 62/306 (20%), Positives = 126/306 (41%), Gaps = 19/306 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +++ L  E    K T+ SY      FL +        I    I +    +++ +IS 
Sbjct: 5   IDPFVRYL-YEEAKDKKTIASYRTTVAHFLEWYEQREGNII----IEETRPVDVKEYISY 59

Query: 78  RRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK----KSNSLPRALNEK 132
            + Q K    ++ + ++ +K F  YL +  +  ++ +  ++  K    + +S  + L ++
Sbjct: 60  LKHQCKRKPATINKYIAALKVFFSYLTEVGLVKDNPMTRIKTEKIEYAQGSSQTKWLTKE 119

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLR 189
           +    +  V L    + ++   RN AI+ L+   GLR++E  SL   +I    +D   + 
Sbjct: 120 EQERFISYVELE---KNEFKRLRNLAIIDLMIYAGLRVNEVASLELSDIQVKGNDVEIIV 176

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYI 247
            QGKG+K   V L+    + + ++                 LF   R   L     Q+ +
Sbjct: 177 RQGKGNKYASVLLVQKYSRNLRKWLKYRQNLEKSTHKESQRLFVSERSMFLTERAIQKML 236

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +      +  + T H  RHSF  +L + G  +  I+ +  H  + TT IY + + +   
Sbjct: 237 TKYADLANM-KNITPHRFRHSFCKNLANAGTPIEIIRRLARHESIQTTAIYVDASKEEQV 295

Query: 308 DWMMEI 313
             + ++
Sbjct: 296 QALRKM 301


>gi|68637890|emb|CAI36095.1| XerD-like site-specific recombinase [Pseudomonas syringae pv.
           phaseolicola]
          Length = 319

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 63/277 (22%), Positives = 115/277 (41%), Gaps = 24/277 (8%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T ++Y+ D   F  F+        +    RQ++ + + A+ +    + +   +++R L
Sbjct: 39  PRTRRAYQNDLTDFSSFIGL-----ASADDFRQVTRSHVLAWRADLEHRGLAGATIRRKL 93

Query: 93  SGIKSFLKYLKKRKITTE-SNILNMRNLKKSNSLPRALNEKQALTLVDNV---LLHTSHE 148
           + + S   +L +       + +  ++  +         NE +   L D+    LL     
Sbjct: 94  AALASLFDHLLENNAVAGGNPVHGVKRPRIET------NEGKTPALGDHQAKQLLEAPDT 147

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSV 206
                 R+ AIL +L   GLR  EA  L   ++ + +    LR+ GKG K+R +PL P  
Sbjct: 148 ETLKGLRDRAILAVLLYHGLRREEAAQLKTGDLQERRGIKHLRVHGKGSKVRFLPLHPVA 207

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPL-STT 261
            + I  Y +            PLFR +RG      +        +    +  G+ +    
Sbjct: 208 AERIYAYLEQDVE--RDTAPGPLFRSLRGTTTGAGITANGIYTVVEAYAKKAGIVVEHLG 265

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            H LR + AT+ L +  D+  +Q  LGH  +STT++Y
Sbjct: 266 VHGLRATAATNALEHDADIAKVQMWLGHANISTTRLY 302


>gi|329955587|ref|ZP_08296495.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
 gi|328525990|gb|EGF53014.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
          Length = 330

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 60/304 (19%), Positives = 121/304 (39%), Gaps = 28/304 (9%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            + ELL   Q +L   +IE G S+ T+  Y+       + +          + +  ++  
Sbjct: 51  ANAELL---QAYLSAKKIE-GCSEKTIGYYQSTIDTLFVAVC---------KPVCDVTTN 97

Query: 70  EIRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           +IR ++S  +  +K+   ++        SF  +L+      +S +  +  ++  + +   
Sbjct: 98  DIRNYLSGYQEQRKVSRVTIDNMRRIFSSFFAWLEDEDFIVKSPVRRIHRVRTESLVKEV 157

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L ++    L D+            + R+ A++ LL   G+R+ E ++L  ++I   +   
Sbjct: 158 LTDENMEVLRDSC----------QEIRDIAMIDLLASTGMRVGELVNLNREDIDFHERQC 207

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            + GKG+K R V      +  +  Y      D   N  L +        L+    +  +R
Sbjct: 208 VVFGKGNKEREVYFNARTKIHLQNYLSSRTDD---NPALFVSLSNPHSRLSISGVEVRLR 264

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            L R + +      H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN  N   
Sbjct: 265 TLGRKVNIAK-VHPHKFRRTLATMAIDKGMPIEQVQRLLGHVKIDTTLHYAMVNQNNVKM 323

Query: 309 WMME 312
              +
Sbjct: 324 AHRK 327


>gi|295114677|emb|CBL35524.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1]
          Length = 345

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 68/316 (21%), Positives = 129/316 (40%), Gaps = 20/316 (6%)

Query: 13  ELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           +L    +N+L   L  +R  S  T+++Y     Q L ++A   +  +   T   + Y  +
Sbjct: 8   QLFSLLRNFLLIYLPNQRHASSNTVKAYRTAWNQLLKYIAGQKKIPMMSVTFGMIRYEMV 67

Query: 72  RAFISKR-RTQKIGDRSLKRSLSGIKSFLKY---LKKRKITTESNILNMRNLKKSN-SLP 126
            A++      + +G  +    L+ I++F+ Y    +   I+  S +  ++  KK      
Sbjct: 68  VAYLDWLSEEKGVGPATRNNRLAAIRAFITYASACRPEYISLSSELAAIKIQKKKRFREV 127

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             ++E     L              +  R+  ++  LY  G RI EAL +   ++  D++
Sbjct: 128 DYMSEDAVKALF-----AAPDTRTKMGLRDQFLMIFLYDTGARIQEALDVKICDLRIDKT 182

Query: 187 -TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNPGV 242
            T+ + GKG KIR+VPL+    + +  Y  +     ++     LF   R      +    
Sbjct: 183 PTVTLHGKGGKIRVVPLMKDTVQHLDNYMGVFHKGESVFSTEWLFYVERKGSRSAMCDDT 242

Query: 243 FQRYIRQLRRYL-----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
            +  I++           +P     H  RH+ A HL  +G DL  I   LGH ++ TT I
Sbjct: 243 ARLRIQKYAELARENCPDVPERVHPHLWRHTRAMHLYQHGMDLTMISQWLGHKQVETTLI 302

Query: 298 YTNVNSKNGGDWMMEI 313
           Y   +++     + + 
Sbjct: 303 YAYADTEAKRKAIEKA 318


>gi|254168378|ref|ZP_04875223.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|197622659|gb|EDY35229.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
          Length = 255

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 71/281 (25%), Positives = 125/281 (44%), Gaps = 43/281 (15%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R  S  T ++Y    + +L                 +L+    R F+ K  + K    ++
Sbjct: 12  RKYSYRTGKAYIYVVKNYLR---------------SELTP---REFLLKYYSDK-SKSTI 52

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           +++   +K F + +   +   E  +      KK   LP  L+  +   ++          
Sbjct: 53  RQAYFALKFFYRNVLHERFNEEIPLA-----KKKEKLPVVLSRDEVKRMIYGT------- 100

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVR 207
               + ++  +L  LY  G+R+ E  ++  +++  ++  + I+  KGDK R+V L P+++
Sbjct: 101 ---HNIKHRLVLMFLYYAGMRLQEVRNIRWEDVEFEREIIHIKVAKGDKERVVFLHPNLK 157

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             +  Y            +  +F   RGK  +P   Q  ++   R   +  + T HTLRH
Sbjct: 158 NTLEIY--------GRKSKGYVFMSQRGKKYSPKSIQLIVKNAARRAKINKNVTPHTLRH 209

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           SFATHLL  G D+R IQ +LGH  L TTQIYT+V +K+   
Sbjct: 210 SFATHLLEGGADIRYIQQLLGHKHLKTTQIYTHVANKDIKK 250


>gi|153000208|ref|YP_001365889.1| integron integrase [Shewanella baltica OS185]
 gi|151364826|gb|ABS07826.1| integron integrase [Shewanella baltica OS185]
          Length = 319

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 77/313 (24%), Positives = 128/313 (40%), Gaps = 58/313 (18%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RG S  T +SY    + F+ F      E +  + + Q        F++ +R   +   + 
Sbjct: 18  RGYSIRTEKSYLYWIKAFINFHHKRHPETMGTEEVAQF-----LTFLANQR--NVAINTQ 70

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           K +L+ +    +     ++      L      K   LP  L+  +   +++         
Sbjct: 71  KIALNALAYLYQKHLHHELGN----LGFCYATKQRYLPTVLSPSEISLILNE-------- 118

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVR 207
              +D R+  I+ LLYG GLR+SE L L  Q+I  +Q++L ++ GKG K R   L     
Sbjct: 119 ---LDGRDRLIIELLYGSGLRVSECLRLRIQDIDIEQASLTVRDGKGHKDRQTILSHKCA 175

Query: 208 KAILEYYDLCPFDLNLNIQL-----------------------------------PLFRG 232
             +  Y +      + + Q                                    P    
Sbjct: 176 IKLTAYINKAMEIQHRDNQQGIGPSLPNALERKYPNAFKQHGWMFIFPSTTTCINPYTGK 235

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +    L+  V ++ +    R + +    T HT RHSFATHLL +G D+RS+Q +LGH  +
Sbjct: 236 LCRHHLHQSVIRKALGNAVRNIKITKRVTCHTFRHSFATHLLQSGSDIRSVQELLGHNDV 295

Query: 293 STTQIYTNVNSKN 305
           STTQIYT+V  ++
Sbjct: 296 STTQIYTHVLGQH 308


>gi|88799619|ref|ZP_01115195.1| integrase/recombinase (XerC/CodV family) protein [Reinekea sp.
           MED297]
 gi|88777704|gb|EAR08903.1| integrase/recombinase (XerC/CodV family) protein [Reinekea sp.
           MED297]
          Length = 332

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 76/342 (22%), Positives = 137/342 (40%), Gaps = 65/342 (19%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEI---ERGLSKLTLQSYECDTRQFLIFLAFYTEEK 57
           M+    P  +   L ++ + +L    +    RGL+  T ++Y    ++++ F  + + + 
Sbjct: 1   MKKPE-PIDIRIALPEKPKGFLDQFRVFIRSRGLAYATEKTYLLWAKRYIRFSKYQSPKD 59

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
             +Q I         +F++    Q+     +   +L+ +    +      +  ++  L+ 
Sbjct: 60  FKLQDID--------SFLNYLAQQRFCSPNTQATALNALILLYR----EFLGFDTTGLDF 107

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              K+   +P  L++ +A  ++             +      +  L+YG GLRISEAL+L
Sbjct: 108 NYAKRRPKIPTVLSKSEADAIIQE-----------LGGVQKLVTQLMYGSGLRISEALNL 156

Query: 177 TPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRK--------------------------- 208
             ++I      L +   KGDK R   L  S+ +                           
Sbjct: 157 RVKDIDFANGGLFVMEAKGDKSRRTLLPSSLHQSLTSQIAFVEHTFEADQSIGKAGVYLP 216

Query: 209 -AILEYYDLCPFDLNLNIQLPLFRGI--------RGKPLNPGVFQRYIRQLRRYLGLPLS 259
            A+   +    F+L      P             R   ++    QR I++  + L +   
Sbjct: 217 DALSRKWPNAQFELGWQYLFPSNVYSVDPRSGVERRHHISRDQVQRAIKRAVKGLKINKR 276

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            + HT RHSFAT LL  G D+R+IQ ILGH  + TTQIYT+V
Sbjct: 277 VSCHTFRHSFATELLRQGTDIRNIQEILGHSSVETTQIYTHV 318


>gi|146296464|ref|YP_001180235.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410040|gb|ABP67044.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 286

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 140/306 (45%), Gaps = 24/306 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +LKE + +L+     +  ++ T++SY  D   F+ +    T ++   + + +    E ++
Sbjct: 1   MLKEFEEYLKT----QDFTENTIKSYTKDVELFMRWYIDTTGQEFLPENLTEFDLVEYKS 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--PRALNE 131
           ++ +   Q +   ++ RS+  ++ F+ +L  R +  +     ++ +K +     P  L++
Sbjct: 57  YLLR---QNLRPSTVNRSIISLRKFVHFLLDRGLLKKDISTRLKQVKDTTRNLSPVVLDK 113

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLR 189
           K        V        ++  AR+ A + LL   G+RISEA++L  ++I   + +  ++
Sbjct: 114 KDIYKFRRTV-------HQFGKARDIAFVELLLNTGMRISEAINLKLEDIEISERKGKVK 166

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           I GKG   R VPL    RK + EY    P+    +    LF    GKPL      + I +
Sbjct: 167 IWGKGRSYREVPLNSDARKYLSEYLKKRPY----SETNYLFVTSTGKPLTRNTAYKIILK 222

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +   +      H LRH FA  L+  G +L  +Q +LGH R+ TT  Y   N +   + 
Sbjct: 223 YAKLASVD--LHPHMLRHFFAQTLIDKGLNLYDVQQLLGHQRIETTLRYKKPNVQLQEEM 280

Query: 310 MMEIYD 315
           +  + +
Sbjct: 281 VENLLE 286


>gi|299538024|ref|ZP_07051310.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1]
 gi|298726606|gb|EFI67195.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1]
          Length = 298

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 67/301 (22%), Positives = 123/301 (40%), Gaps = 23/301 (7%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           +  E +  +  K    +L +L++    ++ T+  Y     +F             +  + 
Sbjct: 11  STHEGIPKQTRKILNEYLLSLKLA-NKAEATISKYRSFLERFCSEC---------LVELD 60

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            L+  ++  +++K       + ++   LS + SF K+           +      K    
Sbjct: 61  SLTSEDVLKWVNKFSV-GKKESTVINVLSILSSFFKFCLAEDYMDSIVMRKRWVPKLPQP 119

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LPR L E++   +           ++ +  R+ AI+  L+  G R SE  +L  QN+   
Sbjct: 120 LPRFLTEQEYARV--------KMASEQLSLRDRAIVLFLFTSGCRRSEVANLLIQNVDVK 171

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           Q T  ++GKG KIR V         + +Y        +     PLF    G+ L      
Sbjct: 172 QRTAEVRGKGKKIRKVHFSVECALVLKDYLWTR----SGVATEPLFLNKYGEKLQQSGIY 227

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
               +L R  GL  S   H  RH+FAT++L+ G +L  I   +GH  L+TT++Y  + ++
Sbjct: 228 EITTKLGRLAGLEQSLHPHCCRHTFATNMLAKGAELEFIADEMGHTNLNTTRVYARILTE 287

Query: 305 N 305
           +
Sbjct: 288 D 288


>gi|223972389|dbj|BAH23420.1| site-specific tyrosine recombinase [Vibrio cholerae O1 biovar El
           tor]
          Length = 361

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 71/334 (21%), Positives = 138/334 (41%), Gaps = 63/334 (18%)

Query: 18  RQNWLQNLE---IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           R  +L+++      +  S  T ++Y    ++F++F      + +  Q        E+  F
Sbjct: 45  RSPFLESIRQVMRTKHYSIQTEKTYLLWIKRFILFNKKQHPKNMGEQ--------EVTNF 96

Query: 75  ISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++     +++   +   +L  I    K++ +R++T   + +  R  K    +P  L+  +
Sbjct: 97  LTYLAVNRQVTASTQNLALCAIVFMYKHILQRELTLLPDTIKARAPK---RVPSVLSHNE 153

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QG 192
           A+++++            +      +  LLYGCGLR +E L L  ++I  +   + + +G
Sbjct: 154 AMSIINQ-----------LSGSYKLMFSLLYGCGLRKAELLMLRVKDIDFESRNVYVFRG 202

Query: 193 KGDKIRIVPLLPSVRK------------------------------------AILEYYDL 216
           KG K R+  L   + +                                    AI ++   
Sbjct: 203 KGGKDRVKMLPEKLVEPLKLHIEKVRDLHEKDLCEGEGKTSLPSGLARKYPYAISDFKWQ 262

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
             F  ++  + P+   +    L+     + +R      G+    TAH  RHSFAT LL  
Sbjct: 263 FIFPSSVRCKHPVDGYVCRHHLHWTSLTKKLRSAVIRSGVQKHVTAHIFRHSFATQLLKA 322

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           G D+R++Q +LGH  L TTQIYT+V  ++    +
Sbjct: 323 GTDIRTVQELLGHSDLKTTQIYTHVIGQHSSGTI 356


>gi|24373597|ref|NP_717640.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24347925|gb|AAN55084.1|AE015645_10 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 319

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 78/326 (23%), Positives = 130/326 (39%), Gaps = 61/326 (18%)

Query: 21  WLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +L  L+ E   RG S  T ++Y    + F+ F      E +  + + Q        F++ 
Sbjct: 7   FLSGLQQEMRMRGYSIRTEKTYLYWIKAFINFHGKRHPETMGTEEVAQF-----LTFLAN 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +R   +   + K +L+ +    +     ++      L      K   LP  L+  +   +
Sbjct: 62  QR--NVAINTQKIALNALAYLYQKHLHHELGD----LGFCYATKQRYLPTVLSPSEISLI 115

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDK 196
           ++            +D R+  I+ LLYG GLR+SE L L  Q+I  + ++L ++ GKG K
Sbjct: 116 LNE-----------LDGRDRLIIELLYGSGLRVSECLRLRIQDIDIESASLTVRDGKGHK 164

Query: 197 IRIVPLLPSVRKAILEYY-----------------------------------DLCPFDL 221
            R   L     + +  Y                                     +  F  
Sbjct: 165 DRQTILSHRCAEKLTTYIEKAIKIQQDDNQQGIGPSLPNALERKYPNAFRQHGWMFIFPS 224

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
                 P    +    L+  V ++ +    R + +    T HT RHSFATHLL  G D+R
Sbjct: 225 TSTCINPYTGTLCRHHLHQSVIRKALGNAVRNIQMNKRVTCHTFRHSFATHLLQAGRDIR 284

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGG 307
           S+Q +LGH  +STTQIYT+V  ++  
Sbjct: 285 SVQELLGHNDVSTTQIYTHVLGQHFA 310


>gi|189425308|ref|YP_001952485.1| TetR family transcriptional regulator [Geobacter lovleyi SZ]
 gi|189421567|gb|ACD95965.1| putative transcriptional regulator, TetR family [Geobacter lovleyi
           SZ]
          Length = 325

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 76/320 (23%), Positives = 131/320 (40%), Gaps = 60/320 (18%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           +  S+ T   Y    ++++++      +++  +        EI  F++   T++ +   +
Sbjct: 21  KHYSRRTEDVYLDWAKRYILYHNKRHPQEMGKK--------EIEGFLTYLATERQVAAAT 72

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++ + ++   K +          +  +   KK   LP  L EK+  +L+ +V    + 
Sbjct: 73  QNQAKAALQFLYKEVL---EIQLPWLDEVEQAKKPKRLPVVLTEKEVHSLLAHVPQAYA- 128

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
                      +  L+YG G+R+ E L L  Q++  +++ L I+ GKG K R+  L  S+
Sbjct: 129 ----------LLARLMYGTGMRLLEGLRLRVQDLDFERAELLIREGKGGKDRVTMLPQSL 178

Query: 207 RKAI------------------------------------LEYYDLCPFDLNLNIQLPLF 230
            K +                                     E+     F        P  
Sbjct: 179 LKPLQEHLKQVKQAHEQDLLKGYGEVWLSESVARKYPNAGREWVWQYVFPSARLSVDPRS 238

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
              R   L+    QR I+Q     GL  + T HTLRHSFATHLL  G D+R++Q +LGH 
Sbjct: 239 GVTRRHHLDEKGLQRAIKQAAVDAGLTKNVTPHTLRHSFATHLLQAGYDIRTVQELLGHK 298

Query: 291 RLSTTQIYTNVNSKNGGDWM 310
            + TT IYT+V +K G   M
Sbjct: 299 DVQTTMIYTHVLNKGGMGVM 318


>gi|66044739|ref|YP_234580.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
 gi|63255446|gb|AAY36542.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 320

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 67/277 (24%), Positives = 123/277 (44%), Gaps = 23/277 (8%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T ++Y+ D   F  F+       ++    R ++ + + A+ ++   + +   +++R L
Sbjct: 39  PRTRRAYQNDLEDFCGFVGL-----VSADEFRVVTRSHVLAWRAQLEHRGLAGATIRRKL 93

Query: 93  SGIKSFLKYLKKRKITTE-SNILNMRNLKKSN---SLPRALNEKQALTLVDNVLLHTSHE 148
           + + S   +L +       + +  ++  K  +     P AL + QA  L+D        E
Sbjct: 94  AALASLFDHLLESNAIAGGNPVHGVKRPKIESNEGKTP-ALGDHQAKALLD-----APDE 147

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSV 206
           T     R+ AIL +L   GLR  EA  L   +I + +    L++ GKG K+R +PL P  
Sbjct: 148 TTLKGQRDRAILAVLLYHGLRREEAALLQVSDIQERRGIQHLKVHGKGGKVRYLPLHPVA 207

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLP-LSTT 261
              I  + +     L  + ++PLF  +RGK     +        +    +  G+      
Sbjct: 208 AGRIHLFLESSGHHL-ADRKVPLFMPLRGKLTGAGITANGIYTVVAAYAKKAGIEVDGLG 266

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            H LR + AT+ L +  D+  +Q+ LGH  +STT+IY
Sbjct: 267 VHGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303


>gi|251797061|ref|YP_003011792.1| integrase family protein [Paenibacillus sp. JDR-2]
 gi|247544687|gb|ACT01706.1| integrase family protein [Paenibacillus sp. JDR-2]
          Length = 305

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 75/321 (23%), Positives = 134/321 (41%), Gaps = 30/321 (9%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+  +  E +  +L +  + W++    + G +  T + Y  +   +L  L     E    
Sbjct: 1   MKKQHELEDLYGKLTQAFRIWMK----QAGYTDTTQKEYMREAYAYLESLEGAAAE---- 52

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
               Q     + +F+   + +  GDR+  R+LS I+SF   L   ++ T +  + ++  K
Sbjct: 53  ----QAGKMHVISFLIS-KQRGAGDRARNRTLSAIRSFYTALIDFEMATRNPAMEVKKSK 107

Query: 121 KSNSL-PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
              +  P  L E +  + +  +            ARN AI  L+  CGLR+ E   L   
Sbjct: 108 TEKNKKPVYLEEDELASSLSCI-------EGRYRARNVAIFLLMSYCGLRVGEVHRLNRS 160

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           +    + T+ + GKG K   +P+   +   + E             +   F   +G+ L+
Sbjct: 161 DFNPVRGTIEVFGKGRKWNEIPVPEELAAVLSEVAQDRITPYKEQ-EDAFFVSQKGRRLS 219

Query: 240 PGVFQRY-------IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
               Q+         + +  +       + H LRH+FAT LL NG D+R ++ +LGH  +
Sbjct: 220 IRQIQKIAGQTFEAFKSINPHAA-NKKLSCHKLRHTFATILLKNGVDIRVVKELLGHASI 278

Query: 293 STTQIYTNVNSKNGGDWMMEI 313
            TT IYT+VN     + M  I
Sbjct: 279 ETTMIYTHVNDDQKKEAMATI 299


>gi|302387673|ref|YP_003823495.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302198301|gb|ADL05872.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 339

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 119/287 (41%), Gaps = 27/287 (9%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKRS 91
           + TL+ Y  +  + L FL          + I  ++  ++R +    R Q  I   +++  
Sbjct: 71  ENTLKQYTTEICKMLDFLG---------KRIEDITAMDLRYYYGVMREQHGIKMTTMQTR 121

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L  + SF  +L   ++ T + +  +  LK + ++ +  ++++   L  N  +        
Sbjct: 122 LHYLSSFWDFLTTEELVTSNPVKRVGILKLAKTIKKPFSQEEMEALRVNCTV-------- 173

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
              R+ A++  LY  G+R+SE   L   +I   +  L + GKG K R V L  + R  + 
Sbjct: 174 --LRDRALMEFLYSTGVRVSELALLNVCDIEMGRQELIVFGKGSKERKVYLTDNARFYLK 231

Query: 212 EYYDLCPFDLNLNIQL----PLF--RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            Y      +  +  +     PLF         L     Q   RQL R  G+      H  
Sbjct: 232 RYLKERMKEEGITEEELENKPLFATLDQPHARLTVAGIQYMFRQLGRRAGV-KKVHPHRF 290

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           R + AT LL+ G  +  +  +LGH +L TT IY  V  +N  +   +
Sbjct: 291 RRTIATDLLNRGMPVEQVSKLLGHEKLDTTMIYCTVQEENVKESHRK 337


>gi|224367178|ref|YP_002601341.1| Phage integrase/recombinase family protein [Desulfobacterium
           autotrophicum HRM2]
 gi|223689894|gb|ACN13177.1| Phage integrase/recombinase family protein [Desulfobacterium
           autotrophicum HRM2]
          Length = 301

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 59/283 (20%), Positives = 116/283 (40%), Gaps = 21/283 (7%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  ++ +Y+   R FL FL   + E+     +R +++  + AF    + Q    R++   
Sbjct: 19  SDNSVDTYDRAIRTFLDFLGISSPEE-----LRLITHGHVIAFKKFLQDQGRSARTINNR 73

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLLHTSHET 149
           LS I S   +L  +++   +    ++ +    S    + L   +   L+     ++   +
Sbjct: 74  LSAISSLFNHLIDQQVVKINVAQGVKRMPVNASRVEAKVLTPDEVRNLL-----NSPDLS 128

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVR 207
           K    R+ AIL  L+  G R+SE  SL  ++  ++Q    L    KG K   + +   ++
Sbjct: 129 KLQGLRDRAILSTLFFTGCRVSEVCSLKIKDFYEEQGFFVLDFWVKGGKRNRMAINQELQ 188

Query: 208 KAILEYYDLCPFDLNLNIQLPLFR------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            A+ +Y        +    L L            + L+         +    +G+    T
Sbjct: 189 IALDQYLTDAGHGPDPASFLFLPVKSGYKASDPKRNLSRRTIDHLFNKYANTIGIA-GIT 247

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            H+ R +F T  L N   + ++Q  +GH ++ TTQ+Y    +K
Sbjct: 248 PHSARATFITQALENNCPIEAVQKTVGHAQIKTTQMYDKRTAK 290


>gi|11345545|gb|AAD55407.2|AF180939_1 site-specific recombinase IntI [Vibrio mimicus]
          Length = 320

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 79/327 (24%), Positives = 135/327 (41%), Gaps = 62/327 (18%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           ++++  R  +K T+++Y     +++ F        +  +        E+  F++      
Sbjct: 11  EHMQT-RFYAKKTIEAYLHWITRYIYFHNKKHPSLMGDK--------EVELFLTHLAVNG 61

Query: 83  -IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +  ++   +L+ +    K + K  ++ E   +  +  +    LP  L   +   L+D  
Sbjct: 62  NVAAKTQSLALNSLSFLYKEILKMPLSLE---IRFQRSQLERKLPVVLTRDEIRRLLDV- 117

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV 200
                     +D +      LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V
Sbjct: 118 ----------VDPKYQLPAKLLYGSGLRLMECIRLRIQDIDFDYGAIRIWQGKGGKNRTV 167

Query: 201 PLLPSVR-----------------------------KAILEYYDLCPFDLNLNIQLPLFR 231
            L   +                               A+ E Y   P++   +   P F+
Sbjct: 168 TLAKELYPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQ 227

Query: 232 --------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                    +R   +N  V QR +R+  +  G+  + T HTLRHSFATHLL  G D+R++
Sbjct: 228 LSLDPESDVMRRHHMNETVLQRTVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTV 287

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWM 310
           Q  LGH  + TTQIYT+V  +     +
Sbjct: 288 QEQLGHTDVKTTQIYTHVLDRGASGVL 314


>gi|225850417|ref|YP_002730651.1| phage integrase family protein [Persephonella marina EX-H1]
 gi|225645629|gb|ACO03815.1| phage integrase family protein [Persephonella marina EX-H1]
          Length = 292

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 67/308 (21%), Positives = 129/308 (41%), Gaps = 56/308 (18%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  +      S  T+++Y  D +QF+        + +  + I +++  +I  F   
Sbjct: 7   VELYLSYISD---RSAYTVRNYRTDLKQFV--------QSVGDKDITEITKADIAKFRMF 55

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            +  +    ++ R L+ + SF +YL   ++ + S +      K S  +P +L+ ++   +
Sbjct: 56  LQANRRKSSTIARKLASVNSFFEYLIDLELISSSPVSKSHRPKVSQKIPSSLSNEEIQKV 115

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ------------ 185
           + +            +     ++ L+   G+R SE LS+   +I+ ++            
Sbjct: 116 LKSCE----------NLLEKTVIVLMLTTGIRSSELLSIRRSDILIEKDGRTFAPDTILE 165

Query: 186 --------STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                   + ++I+GKG K R+VP+       +L+Y       L+ N    LF      P
Sbjct: 166 NYTDGSEVAYIKIKGKGGKERVVPVSGKPLNILLQY-------LDKNRDERLF------P 212

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
            +    +R I  +    G+P     H LRH+ AT  L +G +LR IQ +LGH    TT  
Sbjct: 213 FSYHTLRRLISNIGSRSGIP--LHPHKLRHTAATIALKSGAELRVIQELLGHASPLTTAR 270

Query: 298 YTNVNSKN 305
           Y  V  + 
Sbjct: 271 YAKVGHEQ 278


>gi|238923684|ref|YP_002937200.1| site-specific tyrosine recombinase [Eubacterium rectale ATCC 33656]
 gi|238875359|gb|ACR75066.1| site-specific tyrosine recombinase [Eubacterium rectale ATCC 33656]
          Length = 331

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 67/302 (22%), Positives = 122/302 (40%), Gaps = 28/302 (9%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +  + +    +IE G+S  +L+ Y    + F   L          + I ++S  +IR 
Sbjct: 52  LPECYETYFVTRKIE-GMSMKSLELYNLVLKDFFFKLN---------KEICKISTNDIRV 101

Query: 74  FISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           ++ K ++ + + + +L    + I +F ++         +   N++ +K      + L   
Sbjct: 102 YLYKNQQERNLSNSTLDTKRTIIHAFFEWAANEGYIGSNPCRNIKPIKYERPKRKPLTGI 161

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   + +             + ++ A+L L Y  G R++E   L   +I      + + G
Sbjct: 162 ELEKVRNACD----------NLKDKALLELFYSTGCRVTEMERLDISDIDFQTKEVLLFG 211

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQL 250
           KGDK RI  L      AI  Y      D   + +  LF   R     L     ++ IR L
Sbjct: 212 KGDKHRISYLNAKAEIAIRNYL-----DSRNDNEEALFVSDRKPYGRLKKPAIEKRIRVL 266

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+      H +RH+ AT  L  G  +  +Q ILGH  ++TT IY  V+  N  +  
Sbjct: 267 GEKSGIGRRLYPHLIRHTTATDGLDRGMPVEEVQQILGHVNIATTMIYAEVSRANVKNNH 326

Query: 311 ME 312
            +
Sbjct: 327 RK 328


>gi|229527749|ref|ZP_04417140.1| integron integrase IntI4 [Vibrio cholerae 12129(1)]
 gi|229334111|gb|EEN99596.1| integron integrase IntI4 [Vibrio cholerae 12129(1)]
          Length = 320

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 77/321 (23%), Positives = 134/321 (41%), Gaps = 61/321 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           R  +K T+++Y     +++ F        +  +        E+  F++    Q  +  ++
Sbjct: 16  RYYAKKTIEAYLHWITRYIHFHNKKHPSLMGDK--------EVEEFLTYLAVQGKVATKT 67

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
              +L+ +    K + K  ++ E   ++ +  +    LP  L   +   L++        
Sbjct: 68  QSLALNSLSFLYKEILKTPLSLE---IHFQRSQLERKLPVVLTRDEIRRLLEI------- 117

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
               +D ++   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V L   +
Sbjct: 118 ----VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKEL 173

Query: 207 R-----------------------------KAILEYYDLCPFDLNLNIQLPLFR------ 231
                                          A+ E Y   P++   +   P F+      
Sbjct: 174 YPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPE 233

Query: 232 --GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
              +R   +N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH
Sbjct: 234 SDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLDVGADIRTVQEQLGH 293

Query: 290 FRLSTTQIYTNVNSKNGGDWM 310
             + TTQIYT+   +     +
Sbjct: 294 TDVKTTQIYTHALDRGASGVL 314


>gi|229004126|ref|ZP_04161927.1| integrase/recombinase [Bacillus mycoides Rock1-4]
 gi|228756987|gb|EEM06231.1| integrase/recombinase [Bacillus mycoides Rock1-4]
          Length = 316

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 62/309 (20%), Positives = 132/309 (42%), Gaps = 19/309 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +KE Q   +       LS  T++ Y     +F  F +     +  I  +R +    ++A+
Sbjct: 17  MKEFQEEKEY----NNLSHRTIEVYMATLNEFRNFCS-----EQEIVDLRDIREATVKAY 67

Query: 75  ISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT--ESNILNMRNLKKSNSLPRALNE 131
           +   ++T+  G  +    L  ++ F  Y +  ++    ++ +  ++  K+   +     +
Sbjct: 68  LRYCKKTRGNGVVTCNSKLHHLRIFFNYWQNEEVIEHKDNPVRKLKPAKEDTKI-EVFTD 126

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
                ++       + +  +   R+ AI+ LL   G+R+ E +++  ++I     T+ + 
Sbjct: 127 YHIQQMLRYYRRLKTRDKSFFGYRDHAIIVLLLSTGIRLGELVNIQWKDIDLVNQTVVLF 186

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GK  + + +P+   + K I E+      +L    Q  LF    GK L P   +   ++L 
Sbjct: 187 GKARRQQSIPITDKLTKEICEWRIFVEKELGSLPQ-YLFTSREGKQLTPNAVKLIFQRLS 245

Query: 252 RYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           + +       + HT RHSFA   +  G D+ ++Q +L H  L  T+ Y ++     G  +
Sbjct: 246 KVMNFKDVRLSCHTFRHSFAHRCIMQGMDVFTLQKLLRHSNLRMTERYLSL----WGTAL 301

Query: 311 MEIYDQTHP 319
            E  D+ +P
Sbjct: 302 REQNDKYNP 310


>gi|229096643|ref|ZP_04227614.1| Integrase/recombinase [Bacillus cereus Rock3-29]
 gi|228686849|gb|EEL40756.1| Integrase/recombinase [Bacillus cereus Rock3-29]
          Length = 305

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 65/305 (21%), Positives = 138/305 (45%), Gaps = 16/305 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L++ E+  GL+  T+QSY     +F ++L    E    I  I  ++   I++++  
Sbjct: 8   IKDYLEDKELS-GLAPRTIQSYGDTLNEFSLWLTTEKE----IINIEDITPQVIKSYLLY 62

Query: 78  R-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITT--ESNILNMRNLKKSNSLPRALNEKQA 134
             + +     +    L  +K+F +YL+   +     +    ++  K   ++ +  +++Q 
Sbjct: 63  CSKERGNAVVTRNGKLQHLKTFFRYLEDEDVIEIRSNPTNKIKPAKTDKTI-KVYSDEQI 121

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             ++       S E      R   ++ +L G G+R+ E +S+   ++     T+ I GK 
Sbjct: 122 KQMLRYYRRMRSRENTLYSYRGHTVIVVLAGTGIRLGELVSMRWDSVDLLNKTITIFGKN 181

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K    PL   V + + E+   C     + +   +F   RG PL     +    +L   +
Sbjct: 182 RKSLSTPLTDKVARELYEWRLFC-EKYYIKLPAHVFNDHRGNPLTVNAVKLMFTRLSVRM 240

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G    TTAH  RH++A++ L  G D+ ++  ++ H ++ TT++Y +      G+ + E  
Sbjct: 241 G--FKTTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHA----FGNSLAESN 294

Query: 315 DQTHP 319
           D+ +P
Sbjct: 295 DKYNP 299


>gi|225028632|ref|ZP_03717824.1| hypothetical protein EUBHAL_02911 [Eubacterium hallii DSM 3353]
 gi|224954042|gb|EEG35251.1| hypothetical protein EUBHAL_02911 [Eubacterium hallii DSM 3353]
          Length = 359

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 57/299 (19%), Positives = 122/299 (40%), Gaps = 23/299 (7%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEE-------KITIQTIRQLSYTEIRAFISKRRTQKIG 84
           S  T  +Y  D + F  FL     +          +  + +++ T++  ++   R  +  
Sbjct: 50  SSRTRIAYAYDLKIFFHFLQEKYPDIEESDLKNWPVTVLDKVTLTQLEEYLDYLRLYEDA 109

Query: 85  DRSLK--------RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           +  +         R  + I++F K+  ++++   +    +   KK       L   +   
Sbjct: 110 ENKVHTNEERGRMRKTASIRTFYKFFYRKQVIKNNTASLLNLPKKHEHTIVRLEIDEIAK 169

Query: 137 LVDNVLLHTSHETKWIDARNS------AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           L+D V    +         N       AIL LL G G+R+SE + +   N+  + + ++I
Sbjct: 170 LLDAVEEGDNLTKSQKKYHNKTKIRDLAILTLLLGTGIRVSECVGIDISNLDFETNGMKI 229

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
             KG    I+     VR+A+L+Y +     +     +  LF  ++ + ++    +  +++
Sbjct: 230 HRKGGADVILYFGEEVREALLDYLEEREKIIPKEGSENALFLSMQKRRISVRAVENLVKK 289

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGG 307
             R +    + T H LR ++ T L    GD+  +  +LGH  ++TT+  Y  +  +   
Sbjct: 290 YARPVTPLKTITPHKLRSTYGTQLYQETGDIYLVADVLGHKDVNTTRKHYAAMEDQRRR 348


>gi|160938560|ref|ZP_02085913.1| hypothetical protein CLOBOL_03456 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438489|gb|EDP16247.1| hypothetical protein CLOBOL_03456 [Clostridium bolteae ATCC
           BAA-613]
          Length = 331

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 65/305 (21%), Positives = 119/305 (39%), Gaps = 31/305 (10%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
             E   ++  +  E   S  T+  Y+      L+++    +E      +  L+Y      
Sbjct: 53  FPELDIFIGKMRFE-NYSASTVNQYQRFLTDLLVYVGKPVQEITGEDVVECLNY------ 105

Query: 75  ISKRRTQKIGDRSL--KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
               + ++I   +   KR ++   SF  +L  R    ++ +  +  +K    +  AL  +
Sbjct: 106 --YEQVRQISTSTKDHKRRIAS--SFFAFLHDRGYIRKNPMATVDPIKYVAEIREALTSR 161

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L               + R++A+L L    G R+SE + +  ++I      +++ G
Sbjct: 162 EVEKLRIAC---------GGNVRDNAVLELFLATGCRVSEVVGMHVEDIDMQVGCVKVLG 212

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K RIV       + +  Y      D      + L      + L     +  IR++  
Sbjct: 213 KGQKERIVFFGDRAMEYLERYL-----DGRRAGAVILSSRAPHQGLKKNALENIIRRIAN 267

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRH+FAT  L+ G  L ++  ++GH  + TT+IY     KNG   +  
Sbjct: 268 QAGLGKRVFPHLLRHTFATRALNKGMPLPTLCDLMGHASVETTRIYA----KNGVGKIKY 323

Query: 313 IYDQT 317
            YD  
Sbjct: 324 EYDMY 328


>gi|292491385|ref|YP_003526824.1| integron integrase [Nitrosococcus halophilus Nc4]
 gi|291579980|gb|ADE14437.1| integron integrase [Nitrosococcus halophilus Nc4]
          Length = 321

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 72/320 (22%), Positives = 128/320 (40%), Gaps = 60/320 (18%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           R  S  T Q+Y    ++F++F               ++   E+  F++    QK +   +
Sbjct: 17  RHFSIRTEQAYVAWIKRFILFHQRRHP--------LEMGEREVSEFLTYLACQKHVAAST 68

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++L+ +    + + +R +     + N+   KK   LP  L+ ++   L+         
Sbjct: 69  QNQALNALVFLYREVLERPLGD---LANVVRAKKPQRLPVVLSREEVSRLLGE------- 118

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
               ++     +  LLYG GLR+ E + L  ++I  ++  + ++ GKG K R+  L   +
Sbjct: 119 ----LEGEQWLMASLLYGSGLRLMECMRLRVKDIDFERQAIGVREGKGRKDRVTLLPEPL 174

Query: 207 R------------------------------------KAILEYYDLCPFDLNLNIQLPLF 230
                                                +A  E+     F        P  
Sbjct: 175 IVPLKRHLATVKTWHERDLAQGFGAVYLPYALERKYPQANKEWGWQYVFPAPKRSVDPRT 234

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
           + +R         Q  IR+  R   +    + HTLRHSFATHLL +G D+R++Q +LGH 
Sbjct: 235 KLVRRHHYYEKTLQAAIRKAVRRARIEKPASCHTLRHSFATHLLESGYDIRTVQELLGHQ 294

Query: 291 RLSTTQIYTNVNSKNGGDWM 310
            + TTQIYT+V  + G   +
Sbjct: 295 DIRTTQIYTHVLKRGGNAVI 314


>gi|160940780|ref|ZP_02088122.1| hypothetical protein CLOBOL_05674 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436300|gb|EDP14067.1| hypothetical protein CLOBOL_05674 [Clostridium bolteae ATCC
           BAA-613]
          Length = 382

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 65/306 (21%), Positives = 124/306 (40%), Gaps = 33/306 (10%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
             E + ++  +  +   +K T+  Y       L +L          + + ++   +I  F
Sbjct: 105 FPELEIYIAKMRFD-NKAKSTIDQYSKFLGDMLCYLG---------KPVDKIQDFDIMNF 154

Query: 75  IS-KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++    T  I D +         SF  +L KR    ++ +  +  +K +  +  AL +K+
Sbjct: 155 LNFYAETNGISDSTKNHKRLIASSFFTFLHKRGYIIKNPMATVDTIKYTAQVREALTQKE 214

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              +               + R++ +L L    G R+SE   +  +NI   Q T+ + GK
Sbjct: 215 VERMRVAC---------GENLRDNVVLELFLASGCRVSEVAGMRVENIDMKQKTVIVLGK 265

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR 251
           G K R V     +   + +Y       L+   + P+   +R   + +     +  +R++ 
Sbjct: 266 GKKERPVFFSDRLLVYLEKY-------LDGRREGPVVISVRAPYQGIKKNAMENIVREIS 318

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +  G+      H LRH+FATH L+ G  L S+  ++GH  + TT+IY     KN    + 
Sbjct: 319 KKAGIEKRVFPHLLRHTFATHALNKGMPLESLSDLMGHACIETTRIYA----KNHMSKIR 374

Query: 312 EIYDQT 317
             YD  
Sbjct: 375 YEYDMY 380


>gi|298206637|ref|YP_003714816.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559]
 gi|83849267|gb|EAP87135.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559]
          Length = 265

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 82/283 (28%), Positives = 127/283 (44%), Gaps = 30/283 (10%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           E+ L++ T+  Y   TR FL +L+    ++IT   +++ +Y  I            G   
Sbjct: 3   EKRLAQNTIDIYTEVTRIFLRYLSLKQADEITNIWVQRFNYDYIIG-------NGFGVAY 55

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             + ++GIK F+ +     +     +  +   KK   LP  L++++   L + +      
Sbjct: 56  QNQCINGIKKFVSF-----LGKPLVLDTLVRPKKPQKLPVVLSKEEISQLFNVINNLKHK 110

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
               +           Y  GLRI EAL LTP+ I   +  +RI Q KG+K R   L  S 
Sbjct: 111 ALLALL----------YSAGLRIGEALQLTPEAIDSKRMLIRIEQAKGNKDRYTLLSESF 160

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-STTAHTL 265
              +        +      +  LF G  G        Q+ +++  R  G+     T HTL
Sbjct: 161 LTLL------RMYYKKYKPKTYLFEGQNGGAYTSSSAQKVLKRALRDAGITRIGVTLHTL 214

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           RHSFATHLL +G DLR IQ +LGH    TT IYT+V+SK+  +
Sbjct: 215 RHSFATHLLESGTDLRYIQELLGHNSPKTTMIYTHVSSKSLQN 257


>gi|238922492|ref|YP_002936005.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|238925709|ref|YP_002939226.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|238874164|gb|ACR73871.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|238877385|gb|ACR77092.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|291525374|emb|CBK90961.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 282

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 124/292 (42%), Gaps = 32/292 (10%)

Query: 18  RQNWLQNLEI---ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
            + +L  LE     R L + ++  Y+     FL ++  + EE         L+  ++R F
Sbjct: 2   YEKYLLQLEEAGKIRNLKERSINCYKNYVSYFLNYMEKHPEE---------LTCQDVRDF 52

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +  ++   +   +L    S I+ F + +    +  +   + +  +   + LP  L+  + 
Sbjct: 53  LLAKKDNGLKATTLNLYNSAIRFFYRNVL--HVLWDD--ITVPRMIIEHKLPTVLSTDEI 108

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D             D +  A+   +Y  G+R+SE + L   +I      + ++   
Sbjct: 109 DRLLDATD----------DLKYKAMFATMYSSGMRVSEVIHLHYDDISRTNMQIHVRDTK 158

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRY 253
           +++    +L     A+L  Y           +  LF        L     ++ IR+    
Sbjct: 159 NRMDRYTILSERNLALLTEYWFR----KGRPKGILFPNQFTGQYLTVSTLEQVIRRSASA 214

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            GL    T H LRHSFATHL+  G + R+IQ++LGH    +T++Y +V++K+
Sbjct: 215 AGLS-GVTPHCLRHSFATHLMEQGVEQRNIQALLGHRDPKSTEVYLHVSNKS 265


>gi|239918537|ref|YP_002958095.1| site-specific recombinase, integrase family [Micrococcus luteus
           NCTC 2665]
 gi|281415254|ref|ZP_06246996.1| site-specific recombinase, integrase family protein [Micrococcus
           luteus NCTC 2665]
 gi|239839744|gb|ACS31541.1| site-specific recombinase, integrase family [Micrococcus luteus
           NCTC 2665]
          Length = 395

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 68/353 (19%), Positives = 136/353 (38%), Gaps = 75/353 (21%)

Query: 16  KERQNWLQNL-EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
              + +L  L +IER  S  T+++Y  D + + +FL             R++    +  F
Sbjct: 53  APIERYLAYLTQIER--SSNTVKAYAHDLKDWFVFLGVQG------LGWREVRLENVAEF 104

Query: 75  ISKRR----------------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTES------- 111
           ++  R                     + ++ R LS + +F ++  +  +           
Sbjct: 105 VAWLRRPPQLRDGTVPVLPSVEHHCTESTVNRKLSALSAFYQHAARHGVDLGELLRAWQP 164

Query: 112 ---------NILNMRNLKKSN-----------SLPRALNEKQALTLVDNVLLHTSHETKW 151
                      L+  +  K              LPR L+  +  T++D            
Sbjct: 165 AGGRGSGWKPFLHHISKGKPQARRAIVLSAQSKLPRVLSAAEVQTILDACD--------- 215

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---------KGDKIRIVPL 202
              R+  +  +L+  G+RI EAL L  ++I   +S + +Q          K    R VP+
Sbjct: 216 -HLRDRFLFAVLFDTGMRIGEALGLRHEDIAAAESQITVQRRVNDNGARSKSCAPRTVPV 274

Query: 203 LPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
              + +   +Y  L   DL+ + + + L+    G PL        +++LRR  G+     
Sbjct: 275 SAELVRLYADYLHLEYDDLDSDYVFVNLWGRPHGHPLTYTAVYDLVKRLRRRTGIDFD-- 332

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRL-STTQIYTNVNSKNGGDWMMEI 313
            H  RH+ AT +L +G  +  +  +LGH  + +TT +Y ++++++    + E 
Sbjct: 333 PHWYRHTAATRMLRDGVPIEVVSKLLGHADITTTTAVYGHLSAEDARKALEEA 385


>gi|254225618|ref|ZP_04919226.1| site-specific recombinase IntI4 [Vibrio cholerae V51]
 gi|125621833|gb|EAZ50159.1| site-specific recombinase IntI4 [Vibrio cholerae V51]
          Length = 320

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 77/321 (23%), Positives = 133/321 (41%), Gaps = 61/321 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           R  +K T+++Y     +++ F        +  +        E+  F++    Q  +  ++
Sbjct: 16  RYYAKKTIEAYLHWITRYIHFHNKKHPSLMGDK--------EVEEFLTYLAVQGKVATKT 67

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
              +L+ +    K + K  ++ E   +  +  +    LP  L   +   L++        
Sbjct: 68  QSLALNSLSFLYKEILKTPLSLE---IRFQRSQLERKLPVVLTRDEIRRLLEI------- 117

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
               +D ++   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V L   +
Sbjct: 118 ----VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKEL 173

Query: 207 R-----------------------------KAILEYYDLCPFDLNLNIQLPLFR------ 231
                                          A+ E Y   P++   +   P F+      
Sbjct: 174 YPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPE 233

Query: 232 --GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
              +R   +N  V Q+ +R+  +   +  + T HTLRHSFATHLL  G D+R++Q  LGH
Sbjct: 234 SDVMRRHHINETVLQKAVRRSAQEARIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGH 293

Query: 290 FRLSTTQIYTNVNSKNGGDWM 310
             + TTQIYT+V  +     +
Sbjct: 294 SDVKTTQIYTHVLDRGASGVL 314


>gi|257440124|ref|ZP_05615879.1| integrase/recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
 gi|257197476|gb|EEU95760.1| integrase/recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
          Length = 327

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 62/307 (20%), Positives = 129/307 (42%), Gaps = 31/307 (10%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +  E     + ++    IE G S+ TL  Y       +  +          + ++Q++  
Sbjct: 45  IPAEETDAVEAFITAKRIE-GCSEKTLSYYRKTIESLIAGVG---------KAVQQITTD 94

Query: 70  EIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           ++R +++    +RR+ K+   +++R LS   SF  +L+      +S +  +  +K +  +
Sbjct: 95  DLRRYLTNYQVQRRSSKVTIDNIRRILS---SFFSWLEDEDFIVKSPVRRIHKVKTAKVV 151

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
                ++    + DN             AR+ A++ LL   G+R+ E ++L  ++I  ++
Sbjct: 152 KDTYTDEALELMRDNC----------TTARDLAMVDLLASSGMRVGELVTLNREDINFNE 201

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
               + GKG+K R+V      +  +  Y +    +   N  L +        L  G  + 
Sbjct: 202 RECVVIGKGNKERLVYFDARTKIHLQNYLEGRTDE---NPALFVSLKAPFDRLMIGGVET 258

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +R+L + L +P     H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V  +N
Sbjct: 259 RLRELGKRLNIPK-VHPHKFRRTLATTAIDKGMPIEQVQQLLGHQKIDTTMHYAMVKQQN 317

Query: 306 GGDWMME 312
                 +
Sbjct: 318 VKLAHRK 324


>gi|218282511|ref|ZP_03488761.1| hypothetical protein EUBIFOR_01343 [Eubacterium biforme DSM 3989]
 gi|218216498|gb|EEC90036.1| hypothetical protein EUBIFOR_01343 [Eubacterium biforme DSM 3989]
          Length = 343

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 62/299 (20%), Positives = 119/299 (39%), Gaps = 25/299 (8%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ++    ++   EIE G S+ T + Y     +    +          + +  L+  ++R +
Sbjct: 66  IELINKFIAAKEIE-GCSERTTKYYYATLIKMDSMIT---------KNVTHLTTDDLRMY 115

Query: 75  I-SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +   ++       S+      + SF  +L++     +S +  +  +K    +    +++ 
Sbjct: 116 LTEYQKINNCSKASIDNIRRNLSSFFSWLEEENYILKSPMKRIHKIKTDKVIKETYSDET 175

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L DN            + R+ AI+ LL   G+R+ E + L   +I  +     + GK
Sbjct: 176 LELLRDNC----------NNLRDLAIIDLLSSTGMRVGELVRLNINDIDFENRECVVFGK 225

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R V      +  +  Y +    D   N+ L +        LN    +  +RQL R 
Sbjct: 226 GNKERPVYFDARTKIHLRNYINSRNDD---NVALFVSLDAPHDRLNISGVEIRLRQLGRK 282

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           LG+      H  R + AT  +  G  +  +QS+LGH ++ TT  Y  VN  N  +   +
Sbjct: 283 LGINK-VHPHKFRRTVATKAIDKGMPIEQVQSLLGHSQIDTTMHYAMVNQNNVKESHRK 340


>gi|295101278|emb|CBK98823.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 327

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 62/307 (20%), Positives = 129/307 (42%), Gaps = 31/307 (10%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +  +     + ++    IE G S+ TL  Y       +  +          + +RQ++  
Sbjct: 45  IPADEADAVEAFITAKRIE-GCSEKTLSYYRKTIEALIAGVG---------KAVRQITTD 94

Query: 70  EIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           ++R +++    +RR+ K+   +++R LS   SF  +L+      +S +  +  +K +  +
Sbjct: 95  DLRRYLTNYQVQRRSSKVTIDNIRRILS---SFFSWLEDEDFIVKSPVRRIHKVKTAKVV 151

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
                ++    + DN             AR+ A++ LL   G+R+ E ++L  ++I  ++
Sbjct: 152 KDTYTDEVLELMRDNC----------TTARDLAMIDLLASSGMRVGELVTLNREDINFNE 201

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
               + GKG+K R+V      +  +  Y +    +   N  L +        L  G  + 
Sbjct: 202 RECVVIGKGNKERLVYFDARTKIHLQNYLEGRTDE---NPALFVSLKAPFDRLMIGGVET 258

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +R+L + L +P     H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V  +N
Sbjct: 259 RLRELGKRLNIPK-VHPHKFRRTLATTAIDKGMPIEQVQQLLGHQKIDTTMHYAMVKQQN 317

Query: 306 GGDWMME 312
                 +
Sbjct: 318 VKLAHRK 324


>gi|228900732|ref|ZP_04064950.1| Integrase/recombinase [Bacillus thuringiensis IBL 4222]
 gi|228858916|gb|EEN03358.1| Integrase/recombinase [Bacillus thuringiensis IBL 4222]
          Length = 305

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 66/305 (21%), Positives = 136/305 (44%), Gaps = 16/305 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L++ E+  GL+  T+QSY     +F  +L    E    I  I  ++   I+ ++  
Sbjct: 8   IKDYLEDKELS-GLAPRTIQSYGDTLNEFSRWLVVEKE----IINIEDITPPVIKGYLLY 62

Query: 78  R-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITT--ESNILNMRNLKKSNSLPRALNEKQA 134
             + +     +    L  +K+F +YL+   I     +    ++  K   ++ +  +++Q 
Sbjct: 63  CSKERGNTVVTRNGKLQHLKTFFRYLEDEDIIEIRSNPTNKIKPAKTDKTI-KVYSDEQI 121

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             ++       S E      R   ++ +L G G+R+ E +S+   ++     T+ I GK 
Sbjct: 122 KQMLRYYRRMRSRENTLYSYRGHTVIVVLAGTGIRLGELVSMRWDSVDLLNKTITIFGKN 181

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K    PL   V + + E+   C     + +   +F   RG PL     +    +L   +
Sbjct: 182 RKSLSTPLTDKVARELYEWRLFC-EKYYIKLPAHVFNDHRGNPLTVNAVKLMFTRLSSRM 240

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G    TTAH  RH++A++ L  G D+ ++  ++ H ++ TT++Y +      G+ + E  
Sbjct: 241 G--FKTTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHA----FGNSLAESN 294

Query: 315 DQTHP 319
           D+ +P
Sbjct: 295 DKYNP 299


>gi|28866934|gb|AAM95157.1| site-specific recombinase IntIA [Listonella anguillarum]
          Length = 320

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 74/327 (22%), Positives = 132/327 (40%), Gaps = 62/327 (18%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + ++  R  +K T+++Y     +F+ F       ++  +        E+  F++      
Sbjct: 11  EYMQA-RHYAKKTIEAYLHWITRFIYFNNKTHPMRMGSK--------EVEMFLTDLAVNG 61

Query: 83  -IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +  ++   +L+ +    + + K  ++     +N +  + +  LP  +   +    +++ 
Sbjct: 62  KVAAKTQALALNSLHFLYREIIKEPLSIS---MNFKKSQLAQKLPVVMTRTEIKRFLEH- 117

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV 200
                     I+ R    + LLYG GLR+ E + L  Q+I  D   +R+ QGKG K R V
Sbjct: 118 ----------IEPRYQLQIMLLYGSGLRLMECVRLRIQDIDLDYGAVRVWQGKGGKNRTV 167

Query: 201 PLLPSVR-----------------------------KAILEYYDLCPFDLNLNIQLPLFR 231
            L   +                               A+ E Y   P++ N +   P   
Sbjct: 168 TLAKELYPQLAEQQALAKRYYDKDMQTKGYGGVWLPNALREKYPSAPYEFNWHYLFPSNL 227

Query: 232 G--------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                     R   +N    QR +R+      +  S + HTLRHSFATHLL  G D+R++
Sbjct: 228 LTLDENSGLKRRHHINESALQRAVRKTAHDAEIQKSVSCHTLRHSFATHLLEAGADIRTV 287

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWM 310
           Q  LGH  + TTQIYT+V  +     +
Sbjct: 288 QEQLGHSDVKTTQIYTHVLDRGASGVL 314


>gi|319425156|gb|ADV53230.1| integron integrase [Shewanella putrefaciens 200]
          Length = 319

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 78/326 (23%), Positives = 132/326 (40%), Gaps = 61/326 (18%)

Query: 21  WLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +L  L+ E   RG S  T ++Y    + F+ F      E +  + + Q        F++ 
Sbjct: 7   FLSGLQEEMRMRGYSIRTEKTYLYWIKAFINFHDKRHPETMGTEEVTQF-----LTFLAN 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +R   +   + K +L+ +    +     ++      L      K   LP  L+  +   +
Sbjct: 62  QR--NVAINTQKIALNALAYLYQKHLHHELGD----LGFCYATKQRHLPTVLSPLEISLI 115

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDK 196
           ++            +D R+  I+ LLYG GLR+SE L L  Q+I  ++++L ++ GKG K
Sbjct: 116 LNE-----------LDGRDRLIIELLYGSGLRVSECLRLRIQDIDIERASLTVRDGKGHK 164

Query: 197 IRIVPLLPSVRKAILEYY-----------------------------------DLCPFDL 221
            R   L     + +  Y                                     +  F  
Sbjct: 165 DRQTILSHRCAEKLTTYIEKAIKIQQNDNQQGIGPSLPNALERKYPNAFRQHGWMFIFPS 224

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
           +     P    +    L+  V ++ +    R + +    T HT RHSFATHLL  G D+R
Sbjct: 225 STTCINPYTGTLCRHHLHQSVIRKALGNAVRNIQMNKRVTCHTFRHSFATHLLQAGRDIR 284

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGG 307
           S+Q +LGH  +STTQIYT+V  ++  
Sbjct: 285 SVQELLGHNDVSTTQIYTHVLGQHFA 310


>gi|26986514|gb|AAK02082.2| site-specific recombinase IntIA [Listonella pelagia]
          Length = 319

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 80/312 (25%), Positives = 127/312 (40%), Gaps = 61/312 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRS 87
           R  S  T++SY    +++++F  F    K        LS   +  F+S    + K+  ++
Sbjct: 16  RHYSNKTIESYLFWIKRYIVFHQFAHPSK--------LSEEHVVQFLSHIAVKDKVAVKT 67

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
              +L  I    +   +  ++ E   +  +       LP  L   +    + +       
Sbjct: 68  QALALCSIAFLYRDFFQTPLSLE---MRFQKSLTEKKLPVVLTRDEIRRFIQH------- 117

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
               ID +      LLYG G+R+ E L L  Q+I  D   +R+ QGKG K R V L   +
Sbjct: 118 ----IDPKYKLQTLLLYGSGVRLMECLRLRIQDIDYDYGAIRVWQGKGGKNRTVTLAKEL 173

Query: 207 RKAILEYYDLCPFDLNLNIQLP--------------------------LFRG-------- 232
             ++    DL       +  +P                          LF          
Sbjct: 174 HSSLKAQVDLARSYYQKDCHMPGYAGVYISEGLQRKYPNAQLDFNWHFLFPSAKLSVDPE 233

Query: 233 ---IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
              +R   +N    QR +++  +  G+  S T HTLRHSFATHLL +G D+R++Q  LGH
Sbjct: 234 MGELRRHHINESALQRAVKRSAKDAGIEKSVTCHTLRHSFATHLLESGADIRTVQEQLGH 293

Query: 290 FRLSTTQIYTNV 301
             + TTQIYT+V
Sbjct: 294 SDVKTTQIYTHV 305


>gi|13474966|ref|NP_106529.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|13474967|ref|NP_106605.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025715|dbj|BAB52315.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025792|dbj|BAB52391.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 332

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 70/312 (22%), Positives = 109/312 (34%), Gaps = 22/312 (7%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
             LL+    +   L  +R  S  TL SY       L +      +  +  T+  L    +
Sbjct: 8   PALLEAF--FTDRLIRQRQASPHTLASYRDTFCLLLAYAQRQLRKGASHVTLPDLDTAFL 65

Query: 72  RAFISKR-RTQKIGDRSLKRSLSGIKSFLKY---LKKRKITTESNILNMRNLKKSNSLPR 127
            AF+    R +    RS    L+ I SF +Y              +L + + +       
Sbjct: 66  GAFLDHLERDRDNSARSRNVRLAAIHSFFRYVALHAPEHSALAQRVLAIPSKRYVRRPVA 125

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QS 186
            L   +   L+            WI  R+ A+L L    GLR +E + L  ++I+    +
Sbjct: 126 FLTSIEVAALL-----AAPDLGSWIGRRDRALLLLAVQTGLRAAEIVGLRCEDIVLGPAA 180

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            ++ QGKG K+R  PL       +  +              P F  I G  L+    Q  
Sbjct: 181 YVQCQGKGRKLRNTPLRKDTVTVLRAWLAER----RGRSADPAFPTISGTSLSHDALQYL 236

Query: 247 IRQLRRYLGLP------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           + +                 T H LRH+ A  LL +G D   I   LGH  + TT IY  
Sbjct: 237 LNKHLAVARRDCPSLASKHVTPHVLRHTLAMDLLQHGVDRSVIALWLGHESVETTAIYLQ 296

Query: 301 VNSKNGGDWMME 312
            + K     +  
Sbjct: 297 ADMKLKEQALAR 308


>gi|317481251|ref|ZP_07940322.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902584|gb|EFV24467.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 355

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 72/332 (21%), Positives = 130/332 (39%), Gaps = 21/332 (6%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQ-NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
           M+ NN  E  S  +    + WL   +   R  S  T ++Y    + ++ FL      + T
Sbjct: 1   MKNNNCREDESILIASSIREWLTMYIPQVRANSPHTQRAYTITLKLYVEFLESEKFVRHT 60

Query: 60  IQTIRQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSF---LKYLKKRKITTESNILN 115
             T +      I+ ++   +  +   + +    L+ ++SF   L +   R +  E+ I  
Sbjct: 61  RLTAQCFDTNVIQDWLLWLKNVRNCSNSTCNHRLACLRSFIIYLGHSNPRFLEQENKISE 120

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           ++ +K        + +K    L       +  +T     R+ A+  L+Y    RI+E LS
Sbjct: 121 VKRMKTVRKNIVEITKKAMKALF-----SSIDQTMVTGKRDLALFTLMYSTATRINEILS 175

Query: 176 LTPQNIMDDQ----STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           L  ++I   +    + + + GKG K R +PL+      I  Y      D      L  F 
Sbjct: 176 LRIRDIQLHEKNIHNCIYVMGKGSKRRTIPLMKDCVNIIKSYIRQFHGDKPTENDLLFFS 235

Query: 232 GIRGKP--LNPGVFQRYIRQLRRYLG-----LPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
              G    L      + ++   R        +P     H LR + ATH L  G ++  IQ
Sbjct: 236 SHNGNKVKLTQEAISKRLKIYARKANGICAEMPPDIHCHNLRAARATHWLEEGLNIVMIQ 295

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            +LGH  ++TT  Y  V++    + +  + D 
Sbjct: 296 KLLGHENIATTMNYVAVSNAQKSEALASLEDN 327


>gi|271965872|ref|YP_003340068.1| integrase family protein [Streptosporangium roseum DSM 43021]
 gi|270509047|gb|ACZ87325.1| integrase family protein [Streptosporangium roseum DSM 43021]
          Length = 339

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 69/320 (21%), Positives = 118/320 (36%), Gaps = 15/320 (4%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M G + P  V   L +    +L  L  ++ LS  T+  Y  D        A      +  
Sbjct: 1   MSGGDRP--VPVGLSEVVAEFLSALRTKK-LSSHTVAGYRRDLELVAGLAAAAAGVGVAD 57

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             +R LS   +R   ++  +      S+ R+ S    FL +     +   + +  +   K
Sbjct: 58  LEVRSLSGRLVRTAFAEF-SGPRSPASVNRAWSAWNQFLSFCVAEGLLEGNPMAAVPRPK 116

Query: 121 KSNSLPRAL--NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           +    P+ L  +   + TL++ +             R+  +L L    G+R +E L LT 
Sbjct: 117 QPAKAPKPLLGDGSASATLLERIAAGARRARDPWVERDLVVLALALVTGMRSAELLGLTL 176

Query: 179 QNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI---QLPLFRGI 233
            +I        +++ GKG + R +P+   V + +  Y         L+       L    
Sbjct: 177 GSIGGSPGDRRIQVVGKGGRSRSLPIEAPVERLVERYLHSRMVRFGLSALPRSAALLVDT 236

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTT----AHTLRHSFATHLLSNGGDLRSIQSILGH 289
             +PL  G  Q  +RQ  R+ G+          H LRH FAT L   G     +  +LGH
Sbjct: 237 GNEPLRRGGLQYLVRQCYRHAGVHDRVQRGTLVHALRHEFATRLAERGASAHELMELLGH 296

Query: 290 FRLSTTQIYTNVNSKNGGDW 309
             + T Q Y    ++     
Sbjct: 297 SSIVTGQAYIASTAREVRRA 316


>gi|39997562|ref|NP_953513.1| bifunctional hypothetical protein/integrase [Geobacter
           sulfurreducens PCA]
 gi|39984453|gb|AAR35840.1| hypothetical protein/integrase, fusion [Geobacter sulfurreducens
           PCA]
 gi|298506503|gb|ADI85226.1| integrase domain protein [Geobacter sulfurreducens KN400]
          Length = 457

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 71/309 (22%), Positives = 123/309 (39%), Gaps = 59/309 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRS 87
           R  S+ TLQ+Y    RQF  FL          +   +L+  +++ +++    +  +   +
Sbjct: 155 RHYSRKTLQTYAKWCRQFQRFLKN--------KPPVELTTADVKEYLTWLAVKCNVAAST 206

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++ + +    ++  KR       + ++   KKS  +P  L+  +   ++ +       
Sbjct: 207 QNQAFNSLLFLFRHALKRDFGE---LRDVPRAKKSLYVPVVLSRAEIDAILAH------- 256

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
               +   +  I+ LL+GCGLR+ E L L  ++   D   L + GKG K R +PL  S+ 
Sbjct: 257 ----LYHPHGLIVKLLFGCGLRLFECLQLRVRDFNFDAGILTVHGKGKKDRTLPLPESIL 312

Query: 208 KAILEYYDLCPFDLNLN-------------------------IQLPLFRGI--------- 233
             +             +                         I    F            
Sbjct: 313 NDLQRQMRRVKELHEKDLEQGYDGVFLDDAMEKKYPKAPKELIHQWFFPQKDLTPVEANG 372

Query: 234 --RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
             R   ++  + Q+ +    R   +P   TAHT RHS+ATHLL    D+R+IQ+ LGH  
Sbjct: 373 QLRRAHVHESLLQKALYLAVRKAKIPKRVTAHTFRHSYATHLLQANYDIRTIQTKLGHAS 432

Query: 292 LSTTQIYTN 300
           L TT IYT+
Sbjct: 433 LKTTMIYTH 441


>gi|125624456|ref|YP_001032939.1| putative integrase/recombinase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124493264|emb|CAL98231.1| putative integrase/recombinase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300071244|gb|ADJ60644.1| putative integrase/recombinase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 324

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 128/291 (43%), Gaps = 25/291 (8%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RGLSK T+   E   + F +FL         I  I ++    I+ ++  R      + ++
Sbjct: 19  RGLSKNTIIFREKILKIFSVFLCQN-----DILNINEIKPIHIKQYLVDRLECGYSETTV 73

Query: 89  KRSLSGIKSFLKYLKKRKIT--TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
              L  I++   Y    +     E+ I  ++ +K+   +     + +   ++      T 
Sbjct: 74  NGHLRVIRALFSYCINEEYIRYEEAPIHRVKWIKEKKMIVNTFTDSEIKRMLHYTRKRTF 133

Query: 147 HE------------TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           H             TK+++ RN  ++ +L   G+RI+EALSL  +NI D Q  ++  GKG
Sbjct: 134 HTIKKTGKGRTGFCTKFVNERNYLLILILTDTGMRINEALSLKLENINDSQIIIK-NGKG 192

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL---FRGIRGKPLNPGVFQRYIRQLR 251
            K RIV   P V K  L+Y          N  +P+   F    GK  +  + ++ I ++ 
Sbjct: 193 KKDRIVHCSPLVYKQYLKYNRAKENYFLSNGIVPIENIFVTKFGKKYDYRLAEKEIYKIG 252

Query: 252 RYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           + + +   +  + HT RH FA  L+    D+  IQ +LGH  + TT+IY  
Sbjct: 253 KAVNIRDTIRISPHTFRHYFAQKLVRENVDIYMIQKLLGHASIKTTEIYLR 303


>gi|261250897|ref|ZP_05943471.1| integron integrase IntI4 [Vibrio orientalis CIP 102891]
 gi|260937770|gb|EEX93758.1| integron integrase IntI4 [Vibrio orientalis CIP 102891]
          Length = 320

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 79/321 (24%), Positives = 131/321 (40%), Gaps = 62/321 (19%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQ 81
           +++   R  +  T+ +Y     +F+ F          +    +L    +  F++      
Sbjct: 11  EHMRA-RHYATKTIDAYINWISRFVTFH--------HMAHPSRLDERSVEEFLTHLALHD 61

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
           K+  ++   +L+ I    +   +  +  E+++   ++L     LP  L + +    +   
Sbjct: 62  KVAAKTQALALNAINFLYRDFYRTPL--ENDMKFQKSL-LDRKLPVVLTKHETRQFL--- 115

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV 200
                   K ID R    + LLYG GLR+ EA+ L   +I  D S +RI QGKG K R+V
Sbjct: 116 --------KHIDPRYKLHIMLLYGSGLRVMEAVRLRVHDIDYDYSAVRIWQGKGGKNRVV 167

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP--------------------------LFRGI- 233
            L   +   + E   L       ++  P                          LF    
Sbjct: 168 TLAKELVPMLNEQQALAQRYYKKDMNTPGYAGVWLNQSLQKKYRGAELEFKWHYLFPSNK 227

Query: 234 ----------RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                     R   +N    QR +++  +  G+    T HTLRHSFATHLL +G D+R++
Sbjct: 228 LSTDPETGLVRRHHINAVALQRAVKRTAKEAGIDKHVTCHTLRHSFATHLLESGADIRTV 287

Query: 284 QSILGHFRLSTTQIYTNVNSK 304
           Q  LGH  + TTQIYT+V  +
Sbjct: 288 QEQLGHSDVRTTQIYTHVLER 308


>gi|187921294|ref|YP_001890326.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187923078|ref|YP_001894720.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187714272|gb|ACD15496.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187719732|gb|ACD20955.1| integrase family protein [Burkholderia phytofirmans PsJN]
          Length = 291

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 127/298 (42%), Gaps = 30/298 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ  + ++ + R L+  T   Y    R+F  FL          ++    +  ++R +   
Sbjct: 12  RQRMIDDMRM-RQLAPKTQDIYLHIVREFARFLG---------RSPDTATVEDLRRYQLY 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    SL  +++G+K F      R       I+ M+ ++    LP  L+  +   L
Sbjct: 62  LVDHGTSAVSLNHAITGLKFFFTVTLDRPEL----IVRMQPVRVPRILPVVLSPDEVRRL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
           ++             + ++   L + YG GLR SE ++L   ++  ++ TLRI QGKG +
Sbjct: 118 IEA----------AGNLKHQTALSVAYGAGLRASEVVALKVTDVDSERMTLRIEQGKGRR 167

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLG 255
            R   L P + + +  ++ +      +     LF G+     L+     R I        
Sbjct: 168 DRYAMLSPVLLERLRVWWRMARAQGKMFDGGWLFPGLDPLDQLSTRQLNRAIHAAAEAAH 227

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +    + HTLRHSFATHLL    D+R IQ +LGH +L  T +Y  V +    D + E+
Sbjct: 228 IDKRVSMHTLRHSFATHLLEQKVDIRVIQVLLGHAKLENTALYVQVAT----DLLHEV 281


>gi|300872287|gb|ADK38971.1| IntI4 [Vibrio sp. V89(2010)]
          Length = 297

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 75/311 (24%), Positives = 131/311 (42%), Gaps = 61/311 (19%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRS 91
           + T+++Y     +++ F        +  +        E+  F++    Q  +  ++   +
Sbjct: 4   QKTIEAYLHWITRYIHFHNKKHPSLMGDK--------EVEEFLTYLAVQGKVATKTQSLA 55

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L+ +    K + K  ++ E   +  +  +    LP  L   +   L++            
Sbjct: 56  LNSLSFLYKEILKTPLSLE---IRFQRSQLERKLPVVLTRDEIRRLLEI----------- 101

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR--- 207
           +D ++   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V L   +    
Sbjct: 102 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 161

Query: 208 --------------------------KAILEYYDLCPFDLNLNIQLPLFR--------GI 233
                                      A+ E Y   P++   +   P F+         +
Sbjct: 162 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 221

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   +N  V Q+ +R+  +  G+  + T HTLRHSFATH L  G D+R++Q +LGH  + 
Sbjct: 222 RRHHMNETVLQKAVRRAAQEAGIEKTVTCHTLRHSFATHSLEVGADIRTVQELLGHTDVK 281

Query: 294 TTQIYTNVNSK 304
           TTQIYT+V  +
Sbjct: 282 TTQIYTHVLDR 292


>gi|262173546|ref|ZP_06041223.1| integron integrase IntI4 [Vibrio mimicus MB-451]
 gi|261890904|gb|EEY36891.1| integron integrase IntI4 [Vibrio mimicus MB-451]
          Length = 320

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 78/327 (23%), Positives = 134/327 (40%), Gaps = 62/327 (18%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           ++++  R  +K T+++Y     +++ F        +  +        E+  F++      
Sbjct: 11  EHMQT-RFYAKKTIEAYLHWITRYIYFHNKKHPSLMGDK--------EVELFLTHLAVNG 61

Query: 83  -IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +  ++   +L+ +    K + K  ++ E   +  +  +    LP  L   +   L+D  
Sbjct: 62  NVAAKTQSLALNSLSFLYKEILKMPLSLE---IRFQRSQLERKLPVVLTRDEIRRLLDV- 117

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV 200
                     +D +      LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V
Sbjct: 118 ----------VDPKYQLPAKLLYGSGLRLMECIRLRIQDIDFDYGAIRIWQGKGGKNRTV 167

Query: 201 PLLPSVR-----------------------------KAILEYYDLCPFDLNLNIQLPLFR 231
            L   +                               A+ E Y   P++   +   P F+
Sbjct: 168 TLAKELYPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQ 227

Query: 232 --------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                    +R   +N  V QR +R+  +  G+  + T HTLRHSFATHLL  G D+R++
Sbjct: 228 LSLDPESDVMRRHHMNETVLQRTVRKSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTV 287

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWM 310
           Q  LGH  + TTQIY +V  +     +
Sbjct: 288 QEQLGHTDVKTTQIYAHVLDRGASGVL 314


>gi|162448726|ref|YP_001611093.1| integrase/recombinase [Sorangium cellulosum 'So ce 56']
 gi|161159308|emb|CAN90613.1| Integrase/recombinase [Sorangium cellulosum 'So ce 56']
          Length = 316

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 73/313 (23%), Positives = 122/313 (38%), Gaps = 60/313 (19%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSL 88
             S  T ++Y    RQF+ F           +  RQ+   E+ AF++     ++    + 
Sbjct: 15  HYSPRTEEAYVHWIRQFIRFHHG--------KHPRQMGAEEVTAFLNDLAVARRTAASTQ 66

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            ++L  +    + +   +I     +  +   ++   LP  L+ + ALTL+++++      
Sbjct: 67  NQALCALLFLYRRVLDLQI---PRLEALERARRPEHLPTVLSRQDALTLLEHLI------ 117

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR 207
                     I  LLYG GLR+ EALS+  +++  D+  + + +GKG   R   L    R
Sbjct: 118 -----PPFRLIGELLYGSGLRLLEALSIRVKDVDLDRRQIMVRRGKGQHDRPALLPARAR 172

Query: 208 KAILEYY------------------------------------DLCPFDLNLNIQLPLFR 231
             +                                            F  +     P   
Sbjct: 173 DELQAQLDAVAQRHKKELAVGRGEVDLPHALRAKMPGAATSLAWQYIFPASRPCTDPATG 232

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
                 L+    QR +    R  GL    T H LRHSFATHLL  G D+R+IQ++LGH  
Sbjct: 233 RQVLYHLHESAVQRAVHDAGRAAGLTKRATCHILRHSFATHLLEAGTDIRTIQTLLGHKD 292

Query: 292 LSTTQIYTNVNSK 304
           + TT IYT++  +
Sbjct: 293 VRTTMIYTHIVDR 305


>gi|327183903|gb|AEA32350.1| phage integrase family protein [Lactobacillus amylovorus GRL 1118]
          Length = 322

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 66/307 (21%), Positives = 121/307 (39%), Gaps = 25/307 (8%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           PE       +    +L+  +IE G S+ T++ Y+    Q L  +         +  IR++
Sbjct: 37  PEKKKISNQEYLTKFLEAKKIE-GCSERTIKYYKVTVEQLLRKV---------LDPIRKV 86

Query: 67  SYTEIRAFI-SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +  ++R ++   ++    G  ++      I SF  +L++     +S +  +  ++    +
Sbjct: 87  TTEQMREYLVDYQKINNCGKTTIDNVRRNISSFFSWLEEEDYILKSPMRRIHKIRAEKLV 146

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
              + ++    L D               R+ A++ LLY  G+R+ E + L   +I   +
Sbjct: 147 KNVITDEDIERLRDGCD----------CLRDVAMIDLLYSTGIRVGELVRLNRSDINFSE 196

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
               + GKGDK R V      +  ++ Y        + N  L +        L     + 
Sbjct: 197 RECVVFGKGDKERRVYFDAKSKIHLINYLKSRT---DANPALFVSLDRPYSRLKISGVEI 253

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +RQL R L L      H  R S AT  +  G  +  +Q ILGH ++ TT  Y  VN  N
Sbjct: 254 RLRQLGRKLNLDR-VHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVNQNN 312

Query: 306 GGDWMME 312
                 +
Sbjct: 313 VKAAHRK 319


>gi|163753743|ref|ZP_02160866.1| tyrosine type site-specific recombinase [Kordia algicida OT-1]
 gi|161325957|gb|EDP97283.1| tyrosine type site-specific recombinase [Kordia algicida OT-1]
          Length = 428

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 73/284 (25%), Positives = 132/284 (46%), Gaps = 31/284 (10%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RT 80
           +  L+  R  S+ T++ Y+     F  +   Y  +        +++   IR ++    + 
Sbjct: 158 IDKLKALR-YSESTIKIYKSFLSIFFTYHYAYEPQ--------EITNEMIRTYMRYLVQE 208

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           ++I +    + ++ IK + +    + +  +     +   K+S  LP  L++K+ + L+ +
Sbjct: 209 REISESYQNQMINAIKFYYE----KVLGGKQQTYFIDRPKRSKPLPIVLSQKETIQLLKS 264

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRI 199
           +           + ++  IL ++Y CGLR+SE + L   +I  +++ + I  GKG K R 
Sbjct: 265 I----------PNLKHKTILTVIYSCGLRVSELIDLKLSSIYLEENKIHIVAGKGKKDRY 314

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           V L      A+     +  +      +  L  G +G        Q++I++     GL  +
Sbjct: 315 VTL------AVRTKKLIKIYIKKYAPEHYLIEGQKGGKYATSSIQKFIKKYSNEAGLTKN 368

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            T HTLRHSFATHLL  G  LR IQ ILGH    TT+IYT++  
Sbjct: 369 VTPHTLRHSFATHLLEKGISLRYIQYILGHQNSKTTEIYTHITQ 412


>gi|156974288|ref|YP_001445195.1| integrase [Vibrio harveyi ATCC BAA-1116]
 gi|156525882|gb|ABU70968.1| hypothetical protein VIBHAR_02003 [Vibrio harveyi ATCC BAA-1116]
          Length = 318

 Score =  162 bits (410), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 86/321 (26%), Positives = 130/321 (40%), Gaps = 68/321 (21%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           R  +K T+++Y    +++++F          +    +L   ++  F+S     +K+  ++
Sbjct: 16  RHYAKKTIETYLFWIKRYIVFHQ--------LTHPSKLCEDDVERFLSHLAIDEKVAVKT 67

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALTLVDNVLLHT 145
              +L+ I    +     +       LNMR  K      LP  L   +    V +     
Sbjct: 68  QALALNAISFLYR-----EYFQMPLSLNMRFQKSLTEKKLPVVLTRDEVRRFVQH----- 117

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLP 204
                 ID +    + LLYG GLRI E L L  Q+I  D   LR+ QGKG K R V L  
Sbjct: 118 ------IDPKYKLHIQLLYGSGLRIMECLRLRIQDIDYDYGALRVWQGKGGKNRTVTLAK 171

Query: 205 SVRK-----------------------------AILEYYDLCPFDLNLNIQLPLFR---- 231
            + +                              +   Y     D N +   P  +    
Sbjct: 172 ELHEPLKAQVNLTRDYYQKDRHMGGYAGVYISDGLRRKYPGAELDFNWHFLFPSTKLSID 231

Query: 232 ----GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                 R   +N    QR +++  +  G+  S T HTLRHSFATHLL  G D+R++Q  L
Sbjct: 232 ADTGEFRRHHVNESAIQRAVKRAAKDAGIEKSVTCHTLRHSFATHLLETGADIRTVQEQL 291

Query: 288 GHFRLSTTQIYT---NVNSKN 305
           GH  + TTQIYT   +VN KN
Sbjct: 292 GHTDVKTTQIYTAVHHVNHKN 312


>gi|315038770|ref|YP_004032338.1| phage integrase family protein [Lactobacillus amylovorus GRL 1112]
 gi|312276903|gb|ADQ59543.1| phage integrase family protein [Lactobacillus amylovorus GRL 1112]
          Length = 322

 Score =  162 bits (410), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 68/307 (22%), Positives = 121/307 (39%), Gaps = 25/307 (8%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           PE       +    +L+  +IE G S+ T++ Y+    Q L         K  +  IR++
Sbjct: 37  PEKKMISNQEYLNKFLEAKKIE-GCSERTIKYYKVTVEQLL---------KKVLHPIRKV 86

Query: 67  SYTEIRAFI-SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +  ++R ++   ++    G  ++      I SF  +L++     +S +  +  ++    +
Sbjct: 87  TTEQMREYLVDYQKINNCGKTTIDNVRRNISSFFSWLEEEDYILKSPMRRIHKIRAEKLV 146

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
              + ++    L D               R+ A++ LLY  G+R+ E + L   +I   +
Sbjct: 147 KNVITDEDIERLRDGCD----------CLRDVAMIDLLYSTGIRVGELVRLNRADINFSE 196

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
               + GKGDK R V      +  ++ Y      D   N  L +        L     + 
Sbjct: 197 RECVVFGKGDKERRVYFDAKSKIHLINYLKSRTDD---NPALFVSLDRPYSRLKISGVEI 253

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +RQL R L L      H  R S AT  +  G  +  +Q ILGH ++ TT  Y  VN  N
Sbjct: 254 RLRQLGRKLNLDR-VHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVNQNN 312

Query: 306 GGDWMME 312
                 +
Sbjct: 313 VKAAHRK 319


>gi|71725297|ref|YP_272272.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71558887|gb|AAZ38096.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 319

 Score =  162 bits (410), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 69/290 (23%), Positives = 120/290 (41%), Gaps = 29/290 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            W  NL+  R     T ++Y+ D   F  F+        +    RQ++ + + A+ +   
Sbjct: 31  EWFANLDNRR-----TRRAYQNDLTDFSSFIGL-----ASADDFRQVTRSHVLAWRADLE 80

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTE-SNILNMRNLKKSNSLPRALNEKQALTLV 138
            + +   +++R L+ + S   YL +       + +  ++  +         NE +   L 
Sbjct: 81  QRGLAGATIRRKLAALASLFDYLLENNAVAGGNPVHGVKRPRIET------NEGKTPALG 134

Query: 139 DNV---LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGK 193
           D+    LL           R+ AIL +L   GLR  EA  L   ++ + +    LR+ GK
Sbjct: 135 DHQAKQLLEAPDTETLKGLRDRAILAVLLYHGLRREEAAQLHTHDLQERRGIKHLRVHGK 194

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQ 249
           G KIR +PL P   + I  Y +            PLFR +RG      +        +  
Sbjct: 195 GSKIRFLPLHPVAAERIYAYLEQDSERAAKPG--PLFRSLRGTTTGAAITANGIYSVVEA 252

Query: 250 LRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             +  G+ +     H LR + AT+ L +  D+  +Q  LGH  +STT++Y
Sbjct: 253 YAKKAGIVVEHLGVHGLRATAATNALEHDADIAKVQMWLGHANISTTRLY 302


>gi|297561148|ref|YP_003680122.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296845596|gb|ADH67616.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 329

 Score =  162 bits (410), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 67/319 (21%), Positives = 123/319 (38%), Gaps = 20/319 (6%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGL--SKLTLQSYECDTRQFLIFLAFYTEEKI 58
           M     P   + E         Q L   R    S  T+ +Y  D R  L  +A     + 
Sbjct: 1   MSAQTGPVAEAVE---------QYLVARRAAKPSPHTVAAYRRDLRGVLGCVAQVMGVEP 51

Query: 59  TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
                + L    +RA  ++   ++    S+ R+ S    F  +     +   + +  +  
Sbjct: 52  EQVEWQDLEAGVLRAAFAEFAGER-AASSVVRAWSTWNGFFGFWVSEGVVAGNPMSAVPR 110

Query: 119 LKKSNSLPRAL-NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
            +   S P+ L  E     L++ +             R+ A+L L    G+R +E LSL 
Sbjct: 111 PRVRPSGPKPLMGEDTPERLLEALARGARKARDPWPERDLAVLALALLTGMRSAEMLSLR 170

Query: 178 PQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIR 234
            +++     +  +R+ GKG   R++P+   +   +  Y         +     PL    R
Sbjct: 171 VESVGGRSGERRIRVVGKGGGERVLPIEVPLEALLEAYLVSRRERFGVVRGSDPLLVDNR 230

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTT----AHTLRHSFATHLLSNGGDLRSIQSILGHF 290
           G+ L  G  Q  ++Q  ++ G+          H LRH+FAT L  +G  +  I  +LGH 
Sbjct: 231 GEGLRRGGLQYLVQQCYKHAGVHDRVARGTLVHALRHTFATRLAEDGASVSEIMHLLGHA 290

Query: 291 RLSTTQIYTNVNSKNGGDW 309
            ++++Q Y  V ++   + 
Sbjct: 291 SVASSQAYIEVTARAQREA 309


>gi|148264909|ref|YP_001231615.1| integron integrase [Geobacter uraniireducens Rf4]
 gi|146398409|gb|ABQ27042.1| integron integrase [Geobacter uraniireducens Rf4]
          Length = 452

 Score =  162 bits (410), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 72/319 (22%), Positives = 127/319 (39%), Gaps = 62/319 (19%)

Query: 22  LQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           L+ L  E   R  S+ TL++Y   +RQF  FL          +  ++LS  +++ +++  
Sbjct: 140 LEKLAEEIKVRHYSRKTLKTYALWSRQFQRFLKN--------KPPQELSTADVKEYLTYL 191

Query: 79  RTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             +  +   +  ++ + +    ++  +R       + ++   KKS  +P  L+  +   +
Sbjct: 192 AVKCHVAASTQNQAFNSLLFLFRHALQRDFGE---LRDVPRAKKSLYIPAVLSRLEIDAI 248

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++            +    + ++ +L+GCGLR+ E L L  ++   D + L + GKG K 
Sbjct: 249 LEQ-----------LSHPYNLVVKMLFGCGLRLFEGLQLRVRDFNFDVNILTVHGKGKKD 297

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLN-------------------------IQLPLFRG 232
           R VPL  S+   +           + +                         I    F  
Sbjct: 298 RTVPLPESILTELKAQIKRVGVLHDRDLVAGYDGVFLDDAVERKYPNAAKEFIHQWFFPQ 357

Query: 233 -----------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
                       R   L+    Q  +    R   +P   T+H  RHSFATHLL    D+R
Sbjct: 358 QSLTMVEETGERRRWHLHESELQEALYHAVRRAKIPKRVTSHIFRHSFATHLLQANYDIR 417

Query: 282 SIQSILGHFRLSTTQIYTN 300
            IQ +LGH  L TT IYT+
Sbjct: 418 VIQKLLGHASLKTTMIYTH 436


>gi|260462714|ref|ZP_05810920.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
 gi|259031620|gb|EEW32890.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
          Length = 280

 Score =  162 bits (410), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 57/249 (22%), Positives = 110/249 (44%), Gaps = 16/249 (6%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            +    +  ++R F  +++   +   ++   +S ++ F      R          +  L 
Sbjct: 10  DSPDTATADDLRRFQIEQQEDGVPVPTMNSIVSALRFFFTQTLDR----PDLARRLVRLA 65

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
              +LP  L+  +   L++               ++ A L + YG GLR++E   L   +
Sbjct: 66  HPRNLPVVLSRDEVARLLNAT----------TCLKHQAALSVAYGAGLRVAEVSMLKVTD 115

Query: 181 IMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPL 238
           +  ++  LR+ +GKG + R   L   + + + E++ +      ++    LF G    KP+
Sbjct: 116 LDSERMLLRVERGKGGRYRNAMLSEDLLRLLREWWKVGRQQGVMHRDGWLFPGQHAMKPI 175

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +     R + +  +   +      HTLRHSFATHLL +G D+R IQ +LGH +L+ T +Y
Sbjct: 176 STRQLYRIVVEAAQAADIAKRVGPHTLRHSFATHLLEDGTDIRIIQVLLGHAKLNNTALY 235

Query: 299 TNVNSKNGG 307
             V ++   
Sbjct: 236 AKVATRTVR 244


>gi|302035314|ref|YP_003799985.1| class 3 integrase Int3 [Escherichia coli]
 gi|28207197|gb|AAO32355.1| IntI3 integrase [Klebsiella pneumoniae]
 gi|262234436|gb|ACY39221.1| Int3 [Escherichia coli]
          Length = 346

 Score =  162 bits (410), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 69/327 (21%), Positives = 133/327 (40%), Gaps = 62/327 (18%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           + ++ER  +L  +         T ++Y    + F+++ A         +  R++   E+ 
Sbjct: 22  DQVRERVRYLHYIL-------QTEKAYVYWAKAFVLWTARSHG---GFRHPREMGQAEVE 71

Query: 73  AFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
            F++   T+K +   + +++L+ +    + +   ++     +  +    +   +P  L  
Sbjct: 72  GFLTMLATEKQVAPATHRQALNALLFLYRQVLGMEL---PWMQQIGRPPERKRIPVVLTV 128

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           ++  TL+ ++               + +  LLYG GLR+ EAL L  +++  D+  + ++
Sbjct: 129 QEVQTLLSHM-----------AGTEALLAALLYGSGLRLREALGLRVKDVDFDRHAIIVR 177

Query: 192 -GKGDKIRIVPLLPSVRKAILE------------------------------------YY 214
            GKGDK R+V L  ++   +                                      + 
Sbjct: 178 SGKGDKDRVVMLPRALVPRLRAQLIQVRAVWGQDRATGRGGVYLPHALERKYPRAGESWA 237

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
               F        P     R   L      R +++     G+    + HTLRHSFATHLL
Sbjct: 238 WFWVFPSAKLSVDPQTGVERRHHLFEERLNRQLKKAVVQAGIAKHVSVHTLRHSFATHLL 297

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301
             G D+R++Q +LGH  +STT IYT+V
Sbjct: 298 QAGTDIRTVQELLGHSDVSTTMIYTHV 324


>gi|262274250|ref|ZP_06052061.1| integron integrase IntI4 [Grimontia hollisae CIP 101886]
 gi|262220813|gb|EEY72127.1| integron integrase IntI4 [Grimontia hollisae CIP 101886]
          Length = 320

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 72/314 (22%), Positives = 130/314 (41%), Gaps = 61/314 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           +  +K ++++Y      F+ F          ++   ++   ++  F+S    Q+ +   +
Sbjct: 16  KRYAKKSIEAYLHWIAAFIRFH--------NMKHPAEMGDVDVELFLSHLANQRDVSPNT 67

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
              +L+ +    + + ++ +   S  L+    K+   LP  L  ++   L+         
Sbjct: 68  QALALNALVFLYRDIIQQPL---SVSLDFAMTKRKQKLPVVLTREEVKKLL--------- 115

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRI----VPL 202
               + A++  I  L+YG GLR+ EA+ L  +++  D   LRI  GKG K RI      L
Sbjct: 116 --SLVPAQHYLISALMYGSGLRLMEAVRLRVKDVDFDYQCLRIFDGKGGKSRIVTLATEL 173

Query: 203 LPSVRKAILEYYDLCPFDLNLN----------------------IQLPLFRGI------- 233
              +++ I +   +   D+N +                          LF          
Sbjct: 174 QCPLKQQIDQVNSILCRDVNHHNYAGVWMPHRLRQKYASQSKSLPWQYLFPSHKVSIDPE 233

Query: 234 ----RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
               R   +N    QR I    +   +    T HTLRHSFATHLL +G D+R++Q+ LGH
Sbjct: 234 TRVIRRHHINEKQIQRSINTTAKKANIRKHVTPHTLRHSFATHLLQSGADIRTVQAQLGH 293

Query: 290 FRLSTTQIYTNVNS 303
             + TTQ+YT++  
Sbjct: 294 SDVRTTQVYTHILQ 307


>gi|320335754|ref|YP_004172465.1| integrase family protein [Deinococcus maricopensis DSM 21211]
 gi|319757043|gb|ADV68800.1| integrase family protein [Deinococcus maricopensis DSM 21211]
          Length = 291

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 122/296 (41%), Gaps = 29/296 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GLS  TL+ Y     +F      Y+ E+ T      +    ++ ++   +       S+ 
Sbjct: 18  GLSPETLRYYRQCWERF----KQYSGEEPT------VDRMTLQQYLISLQA-THTPSSIA 66

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
               G+K FLK+    + +       ++N +      + L+E + L L++          
Sbjct: 67  TRWRGLKIFLKWCYVEEYSEFDPS-RLKNPRAPFKKKQPLSEIEVLKLLNACR------- 118

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRK 208
              + R+ AI+ LL+  G+R  E  +LT  ++      + ++ GKG + RIVP  PS  +
Sbjct: 119 ---NFRDKAIVALLFDTGIRSKELCNLTVGDVDLVNRCVYVRNGKGGRDRIVPFSPSALR 175

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            + ++      +        + +G  G  LN       +    +  GL      H LRHS
Sbjct: 176 DLRKWAQQRNVESPW--FFHVVKGEVGGALNRRWLHGLLMSAGKRAGLGEIVGPHKLRHS 233

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           +A   +++ G+  ++Q  LGH  +  TQ Y N+N ++    + + +    P    +
Sbjct: 234 YARSYIASNGNPMALQETLGHSSIIVTQRYVNLNFED----LKKSHITHSPLTNAR 285


>gi|229176440|ref|ZP_04303876.1| Site-specific recombinase, phage integrase [Bacillus cereus MM3]
 gi|228607031|gb|EEK64417.1| Site-specific recombinase, phage integrase [Bacillus cereus MM3]
          Length = 322

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 61/290 (21%), Positives = 124/290 (42%), Gaps = 16/290 (5%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G  K T+  Y    R F+         ++ I+ +  ++   ++ +I+K   +++   ++ 
Sbjct: 41  GFRKRTIDDYSKLFRYFM--------RELNIEKVEIITAAHVQMYINKLLNRELAPATVN 92

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             +S +KS  K L +      +  ++   L+   +    LN  Q   +   V      +T
Sbjct: 93  IRISALKSVFKRLNELGYIKSNPAVDFVKLRTDEAPIFTLNHNQIKRIFRVV-----DKT 147

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
            +   R+   + L+  CGLR++E   L   +I  D  T+ + G  +K R    +P  +K 
Sbjct: 148 TYAGYRDYCAMLLMLHCGLRVNEVNQLEANDIDFDNLTIMLAGAKNKNRKTRAVPMTKKV 207

Query: 210 ILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST--TAHTLR 266
             E   L             +F    GK ++  + ++ + +     GL      + H+LR
Sbjct: 208 AEELRMLIDESREYFEGVTNVFLTQEGKVIDNDLLRKRMYRYGTLAGLLKECRPSPHSLR 267

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           H+FAT+ L NGG + ++  I+GH  ++TT  Y  +N +   +   ++  +
Sbjct: 268 HTFATNFLRNGGSVNALMRIMGHADITTTMRYVRLNDEAVKEQYEKVAAK 317


>gi|120556113|ref|YP_960464.1| integron integrase [Marinobacter aquaeolei VT8]
 gi|120325962|gb|ABM20277.1| integron integrase [Marinobacter aquaeolei VT8]
          Length = 322

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 82/322 (25%), Positives = 136/322 (42%), Gaps = 64/322 (19%)

Query: 21  WLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +LQ++  E   +  S  T +SY    R F++F           +  + +   EI  F++ 
Sbjct: 6   FLQSVRTEIRTKQYSYRTEKSYLYWVRLFILFN--------DKKHPKVMGNHEIERFLNH 57

Query: 78  RR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               + +   +  ++L  I    K++ KR+I      L  +  K    +P  L+  +  +
Sbjct: 58  LAVNRGVSPGTQNQALCAIIFVYKHVLKREIEN----LQYKMTKTPRRMPTVLSPDEVAS 113

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195
           ++ N+           DA    I  LLYGCGLRI+EALSL  ++I     +L +  GKG 
Sbjct: 114 ILQNM-----------DAEYWLITALLYGCGLRINEALSLRVKDIDLKSRSLLVFNGKGR 162

Query: 196 KIRIVPLLPSVRK------------------------------------AILEYYDLCPF 219
           K R   +  ++R+                                    A+ ++     F
Sbjct: 163 KDRYTLIPGNLRENMERQFAHVRAVHESDLADGFGLTSVPASLHKKYGPAMKDFGWQHLF 222

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
                   P+   +    L+   + R +RQ     G+    TAHT RH+FAT LL +G D
Sbjct: 223 PSVTRCVHPIAGYVCRHHLHHSSYSRRLRQAVLATGITKRVTAHTFRHAFATELLRSGSD 282

Query: 280 LRSIQSILGHFRLSTTQIYTNV 301
           +R++Q ILGH  + TT+IYT+V
Sbjct: 283 IRTVQEILGHSDIRTTEIYTHV 304


>gi|258515435|ref|YP_003191657.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257779140|gb|ACV63034.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 349

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 78/326 (23%), Positives = 130/326 (39%), Gaps = 29/326 (8%)

Query: 13  ELLKERQNWLQ-NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           E     +++L+  L   R +S+ T+++Y+      + +L      + TI TI   +   I
Sbjct: 12  EFWSLARSFLKVYLPNAREVSQNTVKAYKQALETLIKYLEDSGFTRDTI-TIGTFTPACI 70

Query: 72  RAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES---NILNMRNLKKSNSLPR 127
             F+    + Q    R+    LS IK+FL+Y     IT ES    +L +   K       
Sbjct: 71  EGFMVWMSKEQNCKPRTCNLRLSAIKTFLRYCGHHVITNESISREVLELPMKKVRKEKIE 130

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS- 186
            ++      ++     +     + I  RN A+L LLY    R+ E + +   ++  ++  
Sbjct: 131 YMSNGATAAIM-----NAPDNRRLIGRRNKAMLSLLYDSAARVQELVDIKVDDLYLNEKA 185

Query: 187 ------TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG---KP 237
                  + ++GKGDK+R V L P   K I  Y +      N     PLF   R     P
Sbjct: 186 SADGESFVTLRGKGDKLRNVNLSPKTAKLIQSYLNEFHPRENRGA--PLFYTKRAGSLWP 243

Query: 238 LNPGVFQRYIRQLRRYL-----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           L+     R +++           +P     H LR S A HL   G  L  I  +LGH  +
Sbjct: 244 LSVDSVSRILKENADKARLCVPDIPERIHCHLLRKSRAMHLYIAGVPLPVIMELLGHASM 303

Query: 293 STTQ-IYTNVNSKNGGDWMMEIYDQT 317
           +TT   Y  V  +   + M +  +  
Sbjct: 304 NTTSGFYAFVTWEMVSEAMKKANEGH 329


>gi|227892233|ref|ZP_04010038.1| phage integrase/recombinase [Lactobacillus salivarius ATCC 11741]
 gi|227865955|gb|EEJ73376.1| phage integrase/recombinase [Lactobacillus salivarius ATCC 11741]
          Length = 322

 Score =  162 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 65/298 (21%), Positives = 126/298 (42%), Gaps = 29/298 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q++L    +E G S  T + Y      F+  +          + I+Q++  ++R +++ 
Sbjct: 48  LQDFLAAKRVE-GCSDRTEKYYRMTLDTFMNEIQ---------KNIQQVTTEDLRKYLTD 97

Query: 78  RRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            + ++   + ++        SF  +L+   I  +S +  +  +K  N++    ++++   
Sbjct: 98  YQKKRNSSKVTIDNIRRIFSSFFSWLEDEDIIIKSPVRRIHKVKTPNNIKETYSDEELEK 157

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L DN            + R+ A++ LL   G+R+ E + L   +I  ++    + GKG+K
Sbjct: 158 LRDNC----------TEIRDLALIDLLASTGMRVGELVRLNRDDIDFEERECVVLGKGNK 207

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYL 254
            RIV      +  +  Y      D N      LF  ++   K ++ G  +  IRQL R +
Sbjct: 208 ERIVYFDARSKLHLKNYLLSRSDDNN-----ALFVSLKKPQKRMSIGGIENRIRQLGREI 262

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           G+      H  R + AT+ +  G  +  +Q +LGH R+ TT  Y  V   N       
Sbjct: 263 GITK-AHPHKFRRTLATNAIDKGMPIEQLQKLLGHERIDTTLHYAMVKQTNVKIAHRR 319


>gi|293372459|ref|ZP_06618843.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292632642|gb|EFF51236.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 196

 Score =  162 bits (409), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 60/190 (31%), Positives = 100/190 (52%), Gaps = 6/190 (3%)

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           + ++     +K    RN AIL  LY CGLR+SE ++L   ++  D+  ++++GKG K R+
Sbjct: 5   DRIISAVDRSKAEGQRNRAILETLYSCGLRVSELITLKLSDLYFDEGFIKVEGKGSKQRL 64

Query: 200 VPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLGLP 257
           VP+ P     I  Y       ++    +  +F   R    L+  +    I++L    G+ 
Sbjct: 65  VPISPRAINEIKLYIPDRNQIEVKKGHEDFVFVSQRRGKGLSRIMIFHMIKELAEKAGIT 124

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + + HT RHSFATHLL  G +LR+IQ +LGH  ++TT+IYT+++       ++E     
Sbjct: 125 KNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIE----H 180

Query: 318 HPSITQKDKK 327
           HP   +  K+
Sbjct: 181 HPRNIKYRKE 190


>gi|229115620|ref|ZP_04245025.1| Integrase/recombinase [Bacillus cereus Rock1-3]
 gi|228667762|gb|EEL23199.1| Integrase/recombinase [Bacillus cereus Rock1-3]
          Length = 305

 Score =  162 bits (409), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 66/305 (21%), Positives = 136/305 (44%), Gaps = 16/305 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L++ E+  GL+  T+QSY     +F  +L    E    I  I  ++   I+ ++  
Sbjct: 8   IKDYLEDKELS-GLAPRTIQSYGDTLNEFSRWLVAEKE----IINIEDITPPVIKGYLLY 62

Query: 78  R-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITT--ESNILNMRNLKKSNSLPRALNEKQA 134
             + +     +    L  +K+F +YL+   I     +    ++  K   ++ +  +++Q 
Sbjct: 63  CSKERGNTVVTRNGKLQHLKTFFRYLEDEDIIEIRSNPTNKIKPAKTDKTI-KVYSDEQI 121

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             ++       S E      R   ++ +L G G+R+ E +S+   ++     T+ I GK 
Sbjct: 122 KQMLRYYRRMRSRENTLYSYRGHTVIVVLAGTGIRLGELVSMRWDSVDLLNKTITIFGKN 181

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K    PL   V + + E+   C     + +   +F   RG PL     +    +L   +
Sbjct: 182 RKSLSTPLTDKVARELYEWRLFC-EKYYIKLPAHVFNDHRGNPLTVNAVKLMFTRLSVRM 240

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G    TTAH  RH++A++ L  G D+ ++  ++ H ++ TT++Y +      G+ + E  
Sbjct: 241 G--FKTTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHA----FGNSLAESN 294

Query: 315 DQTHP 319
           D+ +P
Sbjct: 295 DKYNP 299


>gi|284037946|ref|YP_003387876.1| integrase family protein [Spirosoma linguale DSM 74]
 gi|283817239|gb|ADB39077.1| integrase family protein [Spirosoma linguale DSM 74]
          Length = 390

 Score =  162 bits (409), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 59/277 (21%), Positives = 117/277 (42%), Gaps = 31/277 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSL 88
             S  TL++Y+      + +             + +L+  + +A++     +K +   ++
Sbjct: 129 NYSYRTLKNYKQALIALIRYAGSI--------PLDELTRAQYQAYLLFLTEKKRLSSATI 180

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
              ++      K+ +++ +  +    ++   ++   LP   +  +   ++          
Sbjct: 181 NVHINA----YKFYQEKVLQRDKLYFDIDYPRQPTKLPTVYSVDEVRAIIKAT------- 229

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVR 207
                 +   +  L+Y  GLR+SEA  L   ++  D+  + ++ GKG K R+V L   + 
Sbjct: 230 ---TSLKYRTLFRLIYSTGLRLSEAAHLHLVDLDRDRRLITVRAGKGKKDRVVMLSEKLD 286

Query: 208 KAILEYYDLCPFDLNLNIQLPLFR-GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
             I  Y +             LF      +P++    Q+      R+ G+      H+LR
Sbjct: 287 LDINTYLNQY------RPHRYLFEDASTREPISIRTIQQVYSNTVRFAGIVKRGGIHSLR 340

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           HSFATHLL +G D+R IQ +LGH  + TT  YT+V +
Sbjct: 341 HSFATHLLESGVDIRHIQELLGHESILTTMRYTHVTA 377


>gi|296450797|ref|ZP_06892548.1| integrase/recombinase [Clostridium difficile NAP08]
 gi|296260358|gb|EFH07202.1| integrase/recombinase [Clostridium difficile NAP08]
          Length = 280

 Score =  162 bits (409), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 62/278 (22%), Positives = 121/278 (43%), Gaps = 30/278 (10%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           + L + T ++Y      FL           T +  ++L+  +   +++ +R   I   + 
Sbjct: 16  KNLKESTTKAYCHALSPFL---------NATGKPWQELTVADADDYLTTKRRMGILPETY 66

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
                 ++   K + K     +     +  +K+  SLP  L+ ++   ++D         
Sbjct: 67  NHYYGALRFMYKRVLKLNWDED----EIPRMKRDRSLPTVLSREEVNAILDVT------- 115

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK-IRIVPLLPSVR 207
               + +  AI  ++Y  GLR+SEA  L   +I     ++ I+   ++  R   L     
Sbjct: 116 ---TNLKYKAIFAVMYSGGLRVSEATHLHYDDISRSNHSIHIRNTKNRMDRYTILADRTL 172

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
             + +Y+  C    N+     LF      + L+     + +R+     G+P   T+H  R
Sbjct: 173 DILTQYWFQCQRPRNI-----LFPSQTTGEYLDISAVNQVLRRSSERAGIPKHVTSHAFR 227

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           HSFA+HLL +G D++ IQ++LGH    +T+IY +V++K
Sbjct: 228 HSFASHLLEDGCDIKYIQALLGHLDPKSTEIYLHVSNK 265


>gi|13488150|ref|NP_085857.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14028106|dbj|BAB54698.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 338

 Score =  162 bits (409), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 61/305 (20%), Positives = 115/305 (37%), Gaps = 14/305 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  L  +RG S  T ++Y    +    F+A     +I    +  L+   I  F+    +
Sbjct: 17  FISYLPRQRGASPHTTRAYRDTLKLLFQFVAQRRGREIADLVLEDLNADTIAGFLDHLES 76

Query: 81  QK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           ++     +     + ++SF K+L +  +        +  L       + +   +A+ +  
Sbjct: 77  ERSNSAATRNCRRAALRSFFKHLLRNDLDNALRYTRVLALPAKRMKQKPVTYLEAVDV-- 134

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQGKGDKIR 198
             ++           R+  +L  LY    R+SEA  L  +++       +R++GKG K R
Sbjct: 135 RAIIGNPDRRTHDGWRDHTLLLFLYNSAARVSEATGLLWRDLQLTPPRQVRLRGKGRKER 194

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +VP+      A+     L            +F     +PL        + +    +    
Sbjct: 195 LVPIWRETADALGRLRKLS----GGADHEHVFVNRHNQPLTRDGVAYILAKHAASVARGR 250

Query: 259 ------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                   T H LRHS A  LL +G D+  I+  LGH  ++TT  Y + N K   D +  
Sbjct: 251 PRLARDRITPHVLRHSAAVALLQSGTDVTVIRDYLGHSSIATTNRYISTNLKMRRDALET 310

Query: 313 IYDQT 317
            +   
Sbjct: 311 FWKHA 315


>gi|326943857|gb|AEA19747.1| integrase/recombinase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 314

 Score =  162 bits (409), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 63/303 (20%), Positives = 134/303 (44%), Gaps = 11/303 (3%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N++  L+ E+G  + T++ YE   ++F+ +           ++I  +   E + F+ + 
Sbjct: 8   ENYIVWLK-EQGKRENTIKQYETTLKEFIQWYEDTNGVVFQGESITPMDLQEWKQFLMEV 66

Query: 79  RT----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-PRALNEKQ 133
                 +++   ++   +  +K + K+L +   T  +    ++  K  N    + L+   
Sbjct: 67  AKTNSGKQLSVSTVSTKIGRVKPYFKFLYETNRTQTNLGAMVKQPKIQNKNDAKWLDRIS 126

Query: 134 ALTLVDN-VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
              L+     +    +  W + RN AI+ ++   GLR+SE   L   +I D   ++R  G
Sbjct: 127 KNRLMRYLEDVELIKKNPWKNYRNLAIVNIMLQAGLRVSEVSKLKLDDIEDGFISVR-DG 185

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           KG K R +P+   V  +I ++ +          N    LF   +  PL+    +   + +
Sbjct: 186 KGGKARKIPMNSDVVNSINKWKEHRQIHQAFKENQTEYLFVSQKNGPLSVVGIENIFKTI 245

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           R++ GL    T H LRH+F   L+  G  +  +  ++GH  ++TT+IY     +   + +
Sbjct: 246 RKHTGLE-ELTPHVLRHTFGHDLVQKGIPISYVAELMGHTDINTTKIYVTAGQQEKQEAV 304

Query: 311 MEI 313
            ++
Sbjct: 305 EKL 307


>gi|227461200|gb|ACP39545.1| putative integron integrase [uncultured microorganism]
          Length = 308

 Score =  162 bits (409), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 72/311 (23%), Positives = 127/311 (40%), Gaps = 60/311 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           R +S  T  +Y    R+++ F +            R+L   ++ AF++   T+  +   +
Sbjct: 20  RHMSLRTEAAYLQWIRRYVEFHSRRHS--------RELGPLQVEAFLTALATRSHVAAST 71

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++L  +    +++ K        + N+    +   LP  L   +   ++         
Sbjct: 72  QNQALCAVLFLYRHVLK---VDLPWLENIVRAVRPRRLPVVLTVDEVRCVLAE------- 121

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
               +      +  LLYG GLR+ E L++  +++   +  L ++ GKG K R+  L  S+
Sbjct: 122 ----LAGVPWLVASLLYGSGLRLHEGLTVRVKDLDFARRELVVRNGKGQKDRVTLLPESL 177

Query: 207 RK-------AILEYYDLCPFDLNLNIQLP------------------LFRGIRGK----- 236
           R         + E+++         + LP                  LF           
Sbjct: 178 RDPLVGHLTRLREWFENERRQKRPGVSLPFALAKKYPAASVSWGRQYLFPSASICADPYS 237

Query: 237 ------PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
                  L+PG  QR + +  R  GL    + HT RHSFATHLL +G D+R++Q +LGH 
Sbjct: 238 RLPVRHHLHPGTVQRGVARAVRAAGLAKPASCHTFRHSFATHLLDSGYDIRTVQELLGHS 297

Query: 291 RLSTTQIYTNV 301
            + TT IYT+V
Sbjct: 298 NVKTTMIYTHV 308


>gi|78224199|ref|YP_385946.1| integron integrase [Geobacter metallireducens GS-15]
 gi|78195454|gb|ABB33221.1| Integron integrase [Geobacter metallireducens GS-15]
          Length = 334

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 70/317 (22%), Positives = 124/317 (39%), Gaps = 60/317 (18%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRS 87
           +  S  T Q+Y    +++++F               ++   E+ AF+S    +  +   +
Sbjct: 31  KHYSLRTEQTYTEWAKRYILFHGKRHP--------AEMGKEEVEAFLSHLAVKHNVSAST 82

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++ + I    + +   ++       ++   KK   LP  L   +   L+         
Sbjct: 83  QSQARAAILFLYREVLDIELPWLD---DVEQAKKPQRLPVVLTVSEVQALL--------- 130

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
               +   ++ +  L+YG G+R+ E + L  +++  ++S + ++ GKG K RI  L  +V
Sbjct: 131 --SRLTGTHALMGRLMYGTGMRLMETVRLRVKDVDFERSEIIVREGKGAKDRITMLPQAV 188

Query: 207 RKAI------------------------------------LEYYDLCPFDLNLNIQLPLF 230
              +                                     E+     F        P  
Sbjct: 189 AAPLREHLGRVEALHGADLRAGFGEVHLPHALGKKYPNAGREWGWQYVFPAKQLSTDPRT 248

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
              R    +    QR IRQ  R   L    T HTLRHSFATHLL +G D+R++Q +LGH 
Sbjct: 249 GVTRRHHADEKGIQRAIRQAVRDAELAKPATPHTLRHSFATHLLQSGYDIRTVQELLGHK 308

Query: 291 RLSTTQIYTNVNSKNGG 307
            + TT IYT+V ++ G 
Sbjct: 309 DVQTTMIYTHVLNRGGK 325


>gi|171057457|ref|YP_001789806.1| integrase family protein [Leptothrix cholodnii SP-6]
 gi|170774902|gb|ACB33041.1| integrase family protein [Leptothrix cholodnii SP-6]
          Length = 337

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 66/307 (21%), Positives = 117/307 (38%), Gaps = 20/307 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +Q + + L  +R +S  T+  Y      FL F +    +  T   +  +    I AF+  
Sbjct: 17  QQFFTEYLVAQRAVSPRTVACYRDALSLFLGFASHKLGKAPTAMQLADIRPELILAFLDH 76

Query: 78  RRT-QKIGDRSLKRSLSGIKSFLKYLKKRKIT---TESNILNMRNLKKSNSLPRALNEKQ 133
               +K   RS    L+ +++FLK+  +R +T        L +   +    +   L   +
Sbjct: 77  LEQGRKNTVRSRNLRLTALRAFLKFAARRDVTALHDIERALAVPMKRFERPMLGFLTRPE 136

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLRIQG 192
            L ++            W   R+  +L +LY  G R+SE + +   +++ D    + + G
Sbjct: 137 MLAVLGQP------GENWSSQRDHLLLAMLYNTGARVSEMIGVRVVDVILDGGACVHLHG 190

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K+R +PL  S    I  +  L P    L  +  L     G+ +      + +     
Sbjct: 191 KGRKLRSIPLWKSTVVEIRAWLRLNPV---LRGEAALLPNRDGQAMCRSNVTQRLSLAVT 247

Query: 253 YLGL------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
                         + HTLRH+ A HLL +G     I   LGH   +TT  Y   +    
Sbjct: 248 RATAEQPSLATKRVSPHTLRHTSAMHLLQSGVPFNVIALWLGHESTTTTHRYVEADLAMK 307

Query: 307 GDWMMEI 313
              +  +
Sbjct: 308 EKALARL 314


>gi|313896449|ref|ZP_07830000.1| site-specific recombinase, phage integrase family [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312974873|gb|EFR40337.1| site-specific recombinase, phage integrase family [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 331

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 54/284 (19%), Positives = 113/284 (39%), Gaps = 24/284 (8%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS-KRRTQKIGDRSL 88
           G S+ TL  Y+    + L     +         I +++  ++R ++S  +   +    ++
Sbjct: 68  GCSERTLNYYQTTLLKVLGSFDKH---------ITRITTDDLRKYLSEYQEEHRCSKSNI 118

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
                 + SF  +L++     +S +  +  +K +  +     ++    + DN        
Sbjct: 119 DNIRRILSSFFAWLEEENYILKSPVRRIHKIKTAKVVKETYTDEALEQMRDNC------- 171

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
               ++R+ A++ LL   G+R+ E + L   ++  +     + GKG K R V      + 
Sbjct: 172 ---TNSRDLAMIDLLASTGMRVGELVRLNRSDVDFESRECIVFGKGSKERPVYFDARTKI 228

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            +  Y D    D   N  L +        L+    +  +R + + LG+P     H  R +
Sbjct: 229 HLKNYLDSRIDD---NPALFVSLQKPHNRLHISGVEIRLRDMGKKLGIPK-VHPHKFRRT 284

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            AT  +  G  +  +Q +LGH ++ TT  Y  V+  N  +   +
Sbjct: 285 LATRAIDKGMPIEQVQQLLGHSKIDTTMEYAMVDQNNVKNSHRK 328


>gi|257485790|ref|ZP_05639831.1| Orf28 [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|302130312|ref|ZP_07256302.1| Orf28 [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|331012886|gb|EGH92942.1| Orf28 [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 319

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 64/277 (23%), Positives = 116/277 (41%), Gaps = 24/277 (8%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T ++Y+ D   F  F+        +    RQ++ + + A+ +    + +   +++R L
Sbjct: 39  PRTRRAYQNDLTDFSSFIGL-----ASADDFRQVTRSHVLAWRADLEHRGLAGATIRRKL 93

Query: 93  SGIKSFLKYLKKRKITTE-SNILNMRNLKKSNSLPRALNEKQALTLVDNV---LLHTSHE 148
           + + S   +L +       + +  ++  +         NE +   L D+    LL     
Sbjct: 94  AALASLFDHLLENNAVAGGNPVHGVKRPRIET------NEGKTPALGDHQAKQLLEAPDT 147

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSV 206
                 R+ AIL +L   GLR  EA  L   ++ + +    LR+ GKG KIR +PL P  
Sbjct: 148 ETLKGLRDRAILAVLLYHGLRREEAAQLHTHDLQERRGIKHLRVHGKGSKIRFLPLHPVA 207

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPL-STT 261
            + I  Y +    +       PLFR +RG      +        +    +  G+ +    
Sbjct: 208 AERIHAYLE--QDNERAATPGPLFRSLRGTTTGAGITANGIYTVVEAYAKKAGIVVEHLG 265

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            H LR + AT+ L +  D+  +Q  LGH  +STT++Y
Sbjct: 266 VHGLRATAATNALEHDADIAKVQMWLGHANISTTRLY 302


>gi|326774393|ref|ZP_08233658.1| integrase family protein [Streptomyces cf. griseus XylebKG-1]
 gi|326654726|gb|EGE39572.1| integrase family protein [Streptomyces cf. griseus XylebKG-1]
          Length = 387

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 68/352 (19%), Positives = 129/352 (36%), Gaps = 72/352 (20%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            + +++L  L   RG S  T+Q Y  D R F ++L             R++    +  F 
Sbjct: 44  DDVEDFLAYLTA-RGASPNTVQGYAYDLRDFFVWLGQVG------LDFRRVRLEVVAQFF 96

Query: 76  SKRRTQKIGDR----------------SLKRSLSGIKSFLKYLKKRKITTESNILNM--- 116
              R  K+                   +L+R  + + SF ++  +R  +  + + N+   
Sbjct: 97  DWLRRPKLARAPEVFVLPGVGQALENTTLQRKRAALASFYRFHARRDESVPALLGNLLAR 156

Query: 117 -----------------------RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
                                    +      PR L   +   L+               
Sbjct: 157 QPTGSYTPMLAHTQRGGEVEYSPIRIHAHRKPPRTLTSDETQRLMSACNRR--------- 207

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----------QGKGDKIRIVPLL 203
            R+  ++ LL   GLRISEAL L   ++   +  + +          + KG K RI+P+ 
Sbjct: 208 -RDRFLIALLDEAGLRISEALGLRHADLNLRKGEVHVVPRENNANQARVKGMKGRIIPVR 266

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           P +      Y +     L+ +     LFR   G P+        + +L++  G+    + 
Sbjct: 267 PELFDRYAAYMESEYGTLDCDFVFANLFRAPIGSPMTRANVNELVERLQKRTGIT-HFSP 325

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           H  RH++AT LL     +  +  +LGH    TT +IY++++ ++    ++  
Sbjct: 326 HVCRHTYATRLLRAEVPIEVVAELLGHASPQTTAEIYSHLDVEDHRRVLLSA 377


>gi|323344112|ref|ZP_08084338.1| tyrosine recombinase [Prevotella oralis ATCC 33269]
 gi|323094841|gb|EFZ37416.1| tyrosine recombinase [Prevotella oralis ATCC 33269]
          Length = 345

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 70/313 (22%), Positives = 128/313 (40%), Gaps = 17/313 (5%)

Query: 13  ELLKERQNWLQ-NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           ++    +++ +  L  ERG+S  T++SY    +    F       +     ++ LS   I
Sbjct: 9   DMALLLKDFFETYLPKERGVSSHTIRSYSATFQSLYAFFKDNKGIRANKLFVKDLSRRSI 68

Query: 72  RAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKR---KITTESNILNMRNLKKSNSLPR 127
             +++     +     +    L+ +K+F  Y + +    I     IL++++ K       
Sbjct: 69  NDYLNWLEMKKGNKVPARNSRLASVKAFCHYAQYKDFKNIARWQEILSIKSKKSDMPCIS 128

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-S 186
            L ++   TL+  V   T    + +     AIL  LY  G R +E +S +  N+   +  
Sbjct: 129 FLTQEGMKTLLSEVPTDTIQGRRHL-----AILAFLYDTGARANELISFSAHNLNLTKPY 183

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            + + GKG K RIVP+   +   +  Y      + +   + PLF  I G+ L        
Sbjct: 184 HVVLSGKGRKKRIVPIHEKLVLILKAYMKDTNIEPDNISKQPLFVNIHGRRLTSAGLTHI 243

Query: 247 IRQLRRY------LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           I              +P   + H+ RHS ATHLL  G ++  I+  LGH  + TT+ Y  
Sbjct: 244 IMMYADKVREKHPALMPERLSPHSFRHSKATHLLQAGMNIIYIRDFLGHSSVKTTETYVR 303

Query: 301 VNSKNGGDWMMEI 313
           ++S+     +   
Sbjct: 304 MDSEQKRKALEAA 316


>gi|294340300|emb|CAZ88677.1| putative Phage integrase [Thiomonas sp. 3As]
          Length = 334

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 68/307 (22%), Positives = 127/307 (41%), Gaps = 20/307 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +   +  +R LS  T+ SY       L F            T+  LS   +  F+  
Sbjct: 14  QEFFTDYMVQQRALSPRTVASYRDTFVLLLRFAEDKLRLPAHGMTMTDLSARFLADFLDH 73

Query: 78  RRTQKIG-DRSLKRSLSGIKSFLKYLKKR---KITTESNILNMRNLKKSNSLPRALNEKQ 133
              Q+    RS    L+ +++FLK+  +R    +    N L +   +    +   +  +Q
Sbjct: 74  LEAQRHNCVRSRNVRLAAVRAFLKFAARRDPANLGVIENALAVPMKRFERRMVGFVPHEQ 133

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTLRIQG 192
            L ++D           WI  R+  +L L++  G R+SE + +   +++    +++R+ G
Sbjct: 134 MLAVIDV------ASDTWIGQRDRLMLTLMFNTGARVSEIIGVHVADVVLGPSNSIRLHG 187

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +PL  S  +A+ ++  L P    L  + PL     G+ +      + ++   +
Sbjct: 188 KGRKQRSLPLWKSSARAVRDWLHLNPQ---LGQESPLLPTRDGRAMTRANVAQRLKLAVK 244

Query: 253 YLGLP------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
              +       +S + H +RHS A  LL +G D   I   LGH   STT +Y   +    
Sbjct: 245 VASVKHAQLKTMSVSPHIVRHSTAMSLLQSGVDPCEIALWLGHESPSTTHMYVEADLAMK 304

Query: 307 GDWMMEI 313
              +  +
Sbjct: 305 ERALARL 311


>gi|257055983|ref|YP_003133815.1| site-specific recombinase XerD [Saccharomonospora viridis DSM
           43017]
 gi|256585855|gb|ACU96988.1| site-specific recombinase XerD [Saccharomonospora viridis DSM
           43017]
          Length = 354

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 76/340 (22%), Positives = 128/340 (37%), Gaps = 57/340 (16%)

Query: 22  LQNLEI-ERG-----LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           L+ LEI ER      LS  TL SY  D  +F   L            +  +   ++   +
Sbjct: 17  LEYLEILERRVMRSQLSAATLTSYRRDLLEFTTLLG-------PDTDLDSIEADDLEIAL 69

Query: 76  SKRRTQ-------------------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           +                          G  SL R  + ++   ++   +        + +
Sbjct: 70  TTLAKSPDRRYRVGVKIAEDGSTPPGRGPYSLARWFTAVRGLFRWAVDKGYVQVDPTVKV 129

Query: 117 RNLKKSNSL---PRALNEKQALTLVDNVLLHTSHE---TKWIDARNSAILYLLYGCGLRI 170
              +    +      L   +ALTL +   + +S +    + +  R+ AIL LL   G R+
Sbjct: 130 TPPRVPTRVGGTRVGLRLDEALTLREAPAVRSSGQLRADQRLSLRDEAILRLLVESGPRV 189

Query: 171 SEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPSVRKAILEYY---------DLC 217
           SE       +I   + T    L ++GKG K R +PL     + I  Y             
Sbjct: 190 SELCGANRSDIRVHEETGTPVLHVRGKGRKDRDLPLSKPTVEVIERYLAEERPAPPTPQR 249

Query: 218 PFDLNLNIQL-----PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           P D+    ++      LF  +RG  L+P   QR +++  +   L    T H+LRH+  T 
Sbjct: 250 PHDMVERRRIDDAAGALFVSVRGWRLSPRDVQRMVQRYAKEF-LGRRATPHSLRHTALTV 308

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           L   G D+ ++  I GH  LSTT +Y + +     + + E
Sbjct: 309 LARAGVDIATVAQIAGHASLSTTSVYMDDSMSAAVEAIAE 348


>gi|206976115|ref|ZP_03237024.1| prophage lambdaba03, site-specific recombinase, phage integrase
           family [Bacillus cereus H3081.97]
 gi|206745569|gb|EDZ56967.1| prophage lambdaba03, site-specific recombinase, phage integrase
           family [Bacillus cereus H3081.97]
          Length = 303

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 64/291 (21%), Positives = 129/291 (44%), Gaps = 15/291 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL    + +L +    +G ++ T+++   + +Q   FL      +  I  +  ++   ++
Sbjct: 2   ELEDVIEEYLYHCMA-KGFTQKTMKNKRQEMKQLKRFL----MNEKRISELEAINTLHLK 56

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            ++  +  + +  +S+      +++F  + +K +   E+    +   K    L +    +
Sbjct: 57  QYVRTKHEEGLQPQSIVAMSKIVRAFFSWCQKEEYLKENIAKKVELPKVPKKLLKGFTVQ 116

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   +++           +I+ARN AI+ +L  CGLR  E   L  QN+   ++ + + G
Sbjct: 117 EVSAMIEAF-----SYKNYIEARNKAIVAMLSDCGLRAMEIRGLLTQNV--KETKILVNG 169

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQL 250
           KG+K RI+ + P ++K ++ Y  L    L   I      F      PL+       I++ 
Sbjct: 170 KGNKERIMFISPPLKKILIRYERLKKDYLKDRIVKTDHYFLSYTADPLSHMGIYNVIKEA 229

Query: 251 RRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              + +     + HT RH FA   + NG D+ ++  +LGH  LSTTQ Y  
Sbjct: 230 GERVKIEEARCSPHTFRHFFAVQCILNGVDILTLSKLLGHGDLSTTQRYLQ 280


>gi|157502100|ref|YP_001485199.1| integrase/recombinase [Bacillus thuringiensis]
 gi|87133405|gb|ABD24315.1| integrase/recombinase [Bacillus thuringiensis]
          Length = 314

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 63/303 (20%), Positives = 134/303 (44%), Gaps = 11/303 (3%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N++  L+ E+G  + T++ YE   ++F+ +           ++I  +   E + F+ + 
Sbjct: 8   ENYIIWLK-EQGKRENTIKQYETTLKEFIQWYEDTNGVVFQGESITPMDLQEWKQFLMEV 66

Query: 79  RT----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-PRALNEKQ 133
                 +++   ++   +  +K + K+L +   T  +    ++  K  N    + L+   
Sbjct: 67  AKTNSGKQLSVSTVSTKIGRVKPYFKFLYETNRTQTNLGAMVKQPKIQNKNDAKWLDRIS 126

Query: 134 ALTLVDN-VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
              L+     +    +  W + RN AI+ ++   GLR+SE   L   +I D   ++R  G
Sbjct: 127 KNRLMRYLEDVELIKKNPWKNYRNLAIVNIMLQAGLRVSEVSKLKLDDIEDGFISVR-DG 185

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           KG K R +P+   V  +I ++ +          N    LF   +  PL+    +   + +
Sbjct: 186 KGGKARKIPMNSDVVNSINKWKEHRQIHQAFKENQTEYLFVSQKNGPLSVVGIENIFKTI 245

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           R++ GL    T H LRH+F   L+  G  +  +  ++GH  ++TT+IY     +   + +
Sbjct: 246 RKHTGLE-ELTPHVLRHTFGHDLVQKGIPISYVAELMGHTDINTTKIYVTAGQQEKQEAV 304

Query: 311 MEI 313
            ++
Sbjct: 305 EKL 307


>gi|268316885|ref|YP_003290604.1| integrase family protein [Rhodothermus marinus DSM 4252]
 gi|262334419|gb|ACY48216.1| integrase family protein [Rhodothermus marinus DSM 4252]
          Length = 309

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 60/300 (20%), Positives = 129/300 (43%), Gaps = 12/300 (4%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LPE +         + L  L + R  S+ T ++Y  D  +F  F  F+ + +++++ + +
Sbjct: 2   LPEKLPLPAASAFADDLLPLFLSRCRSENTRRAYRNDLEEF--FGLFFEDGRLSLENVSK 59

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN--MRNLKKSN 123
           +++  +  +I   +     + +L+R +S + SF K+ +  ++   S ++   ++  + S 
Sbjct: 60  VTFAHVNLYIEHLKRSGCAENTLRRKISSVSSFFKWAEAVELVDRSPVVRLLVQLPRASK 119

Query: 124 -SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI- 181
                 L+ ++A  +++    H          R+ A++ +L  C LR SEA ++  ++I 
Sbjct: 120 ERHIVTLSREEARQMLEAARAH-----PRTGIRDEALVRVLLYCWLRRSEAAAMNFEHIR 174

Query: 182 -MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
            +     LR+         +  +P      LE       +    +        RG+ L+ 
Sbjct: 175 KIGAHYVLRLPRTKKGTEEIVKIPPHCMTSLERLAAFYGEARGPVWRSFSNNSRGRRLSA 234

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                 + +L R +GL     AHTLRH+  T  +  G  L  +++   H  + TT +Y +
Sbjct: 235 QSIYNIVARLAREIGLDRRIGAHTLRHTGITLAVQGGAPLHKVRTQARHADIQTTMVYVH 294


>gi|331007978|ref|ZP_08331026.1| Integron integrase IntI4 [gamma proteobacterium IMCC1989]
 gi|330418212|gb|EGG92830.1| Integron integrase IntI4 [gamma proteobacterium IMCC1989]
          Length = 323

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 73/314 (23%), Positives = 122/314 (38%), Gaps = 59/314 (18%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R  SK T+ SY    + F+ F      +K     +          +++  RT  +   + 
Sbjct: 17  RRYSKRTISSYIYWIKAFIHFH-----DKRHPSELGDADAARFLTYLAVERT--VSSSTQ 69

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           + +L+ +        ++ + +   +      K+   LP  L+ ++   L  +        
Sbjct: 70  RTALNALAFLYNRFLEKPLGS---MAEFTRSKRQAKLPIVLSREEVKVLFSH-------- 118

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR 207
              ID +    + LLYG GLR  E L L   ++      +RI  GKG K R+  L P + 
Sbjct: 119 ---IDPKYKLAVGLLYGSGLRRIECLRLRVNDVDFSHLQIRIWNGKGFKHRLTTLAPELI 175

Query: 208 -----------------------------KAILEYYDLCPFDLNLNIQLPLFR------- 231
                                         A+   Y     +L      P +R       
Sbjct: 176 PAIKCQIERANAFLQEDITYPEYCGVWLPDALARKYRNASKELGWQYLFPSYRLSIEPGT 235

Query: 232 -GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             IR   ++     + I   R+   L    ++HTLRHSFATHLL +G D+R++Q  LGH 
Sbjct: 236 SNIRRHHMDESTLNKVIASARKRAKLGKPVSSHTLRHSFATHLLQSGADIRTVQQQLGHS 295

Query: 291 RLSTTQIYTNVNSK 304
            + TT+IYT+V ++
Sbjct: 296 DVKTTEIYTHVLNQ 309


>gi|317477406|ref|ZP_07936636.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906434|gb|EFV28158.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 239

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 60/236 (25%), Positives = 108/236 (45%), Gaps = 21/236 (8%)

Query: 70  EIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           EI  ++      + I      + ++ IK + + +  ++         +   K+  +LP  
Sbjct: 3   EINDYLLYLIHEKNISSCQQNQRINAIKFYYEKVLGQERR----CYKVNRAKREKTLPDV 58

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L++++   ++D             D R   +  +LY  GLRISE L L P +I + +S +
Sbjct: 59  LSKEEIKKILDA---------TVTDLRFFCMFSILYSAGLRISELLELKPGDINESRSLI 109

Query: 189 RIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           R++ GKG K R   L   + K + EY  L         ++ LF    G+P    +  + +
Sbjct: 110 RVRQGKGKKDRYTLLSKPLMKKLTEYNRLY------KPKVWLFEHRPGEPFTESIVSKRL 163

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +   R  G+      H LRHSFATHLL  G D++ ++ ++GH  + TT+ Y ++  
Sbjct: 164 KAAAREAGITKRIYPHLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHIAD 219


>gi|167969523|ref|ZP_02551800.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           H37Ra]
          Length = 352

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 59/199 (29%), Positives = 90/199 (45%), Gaps = 6/199 (3%)

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            K   +LP  L + QAL  +       + +   +  R+  I+ LLY  G+R+SE   L  
Sbjct: 2   PKARRTLPAVLRQDQALRAM-AAAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDV 60

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKP 237
            +I      +R+ GKG+K R VP       A+  +       L        L  G RG+ 
Sbjct: 61  DDIDTGHRLVRVLGKGNKQRTVPFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRR 120

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+    +  + Q    +        H LRHS ATHLL  G DLR +Q +LGH  L+TTQ+
Sbjct: 121 LDVRQARTAVHQTVAAVDGAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQL 180

Query: 298 YTNVNSKNGGDWMMEIYDQ 316
           YT+V        +  ++++
Sbjct: 181 YTHVAVAR----LRAVHER 195


>gi|329925024|ref|ZP_08279968.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
 gi|328940143|gb|EGG36475.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
          Length = 346

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 56/331 (16%), Positives = 126/331 (38%), Gaps = 31/331 (9%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+E  +++  ++    L + T+  Y  +   F+ ++     E+    TIR+++   +R +
Sbjct: 26  LQEAVDFVVKIKRANNLKERTISGYIQNMNYFIEWVT----ERYGEITIREVTADLLREY 81

Query: 75  ISKRRTQ------------------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           +    T                    +   S+   +  +K+F   L + ++   +   N+
Sbjct: 82  VLWCATDKEYYAGHPFKAEYEKGKLGLSPASVNVRIRVLKTFFAVLFEEEVIDRNPAANV 141

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             +++       L++++    +         + +W   R+  I+ L+   GLR+ E  +L
Sbjct: 142 SLMRQDVDTVMPLSDEELRRFM-----KAPDQRQWAQWRDYVIMTLILDTGLRLGEICAL 196

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
               I   + ++ +    +K R    LP   +       L            +F    G+
Sbjct: 197 EKPEIDFVKKSITLPASKNKNRKSRTLPLSTETARLLKQLIAETERNFDTTYVFTTNYGE 256

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L+    Q+          L  + + H LRH+FAT    NG  +  +Q ++GH  ++TT+
Sbjct: 257 QLSEKTIQKSFDNYAERAKLGRTVSPHVLRHNFATMAAENGMSIFHLQKLMGHADIATTR 316

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
            Y  ++       + E + +  P      +K
Sbjct: 317 KYVQISE----GSLAEEHKRFSPLTRLTSRK 343


>gi|149199670|ref|ZP_01876702.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Lentisphaera araneosa HTCC2155]
 gi|149137187|gb|EDM25608.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Lentisphaera araneosa HTCC2155]
          Length = 424

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 82/346 (23%), Positives = 136/346 (39%), Gaps = 66/346 (19%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           + + L    + E       + + + ++   S  T+QSY     ++L     + +E     
Sbjct: 96  KSDRLESRFNEEFDGLLVEFEKAMRLQ-QKSYRTIQSYVTWVERYLAHAKTHYKE----- 149

Query: 62  TIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
                    +R F+S       +   +  ++L  +  F KY+ K  +   S  L     K
Sbjct: 150 ------SDYVRDFLSHLVMRYNVAASTQNQALCALVLFFKYILKCDLGDVSGSLRS---K 200

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K   LP  L   +   ++                +   ++ L+YG GLR SE L L  ++
Sbjct: 201 KDVRLPVVLTVDEVREIL-----------SASTGKEQLMMKLIYGGGLRKSECLRLRIKD 249

Query: 181 IMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ------------- 226
           +   + +L I+ GKG+K R   L   +++ I  + +       ++ +             
Sbjct: 250 LDFSRGSLNIRDGKGNKDRQTLLSRDLKEQIDCHLNEVRKLFEIDRESEVAGVFLPNALI 309

Query: 227 ------------LPLFRG-------------IRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
                         LF               IR    +  +  R+++     LG+    T
Sbjct: 310 KKYPNAGRKWAWFWLFPSEKLSIDPMTSQKTIRRHHNSGQMLSRFLKATCEDLGIKKQCT 369

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            HTLRHSFATHLL  G DLR+IQ +LGH  +STTQIYT+V S N  
Sbjct: 370 VHTLRHSFATHLLERGTDLRTIQELLGHEDISTTQIYTHVLSLNQS 415


>gi|228942745|ref|ZP_04105273.1| Integrase/recombinase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228975855|ref|ZP_04136385.1| Integrase/recombinase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228982303|ref|ZP_04142579.1| Integrase/recombinase [Bacillus thuringiensis Bt407]
 gi|228777408|gb|EEM25699.1| Integrase/recombinase [Bacillus thuringiensis Bt407]
 gi|228783881|gb|EEM31930.1| Integrase/recombinase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228816956|gb|EEM63053.1| Integrase/recombinase [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 308

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 63/303 (20%), Positives = 134/303 (44%), Gaps = 11/303 (3%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +N++  L+ E+G  + T++ YE   ++F+ +           ++I  +   E + F+ + 
Sbjct: 2   ENYIVWLK-EQGKRENTIKQYETTLKEFIQWYEDTNGVVFQGESITPMDLQEWKQFLMEV 60

Query: 79  RT----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-PRALNEKQ 133
                 +++   ++   +  +K + K+L +   T  +    ++  K  N    + L+   
Sbjct: 61  AKTNSGKQLSVSTVSTKIGRVKPYFKFLYETNRTQTNLGAMVKQPKIQNKNDAKWLDRIS 120

Query: 134 ALTLVDN-VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
              L+     +    +  W + RN AI+ ++   GLR+SE   L   +I D   ++R  G
Sbjct: 121 KNRLMRYLEDVELIKKNPWKNYRNLAIVNIMLQAGLRVSEVSKLKLDDIEDGFISVR-DG 179

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           KG K R +P+   V  +I ++ +          N    LF   +  PL+    +   + +
Sbjct: 180 KGGKARKIPMNSDVVNSINKWKEHRQIHQAFKENQTEYLFVSQKNGPLSVVGIENIFKTI 239

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           R++ GL    T H LRH+F   L+  G  +  +  ++GH  ++TT+IY     +   + +
Sbjct: 240 RKHTGLE-ELTPHVLRHTFGHDLVQKGIPISYVAELMGHTDINTTKIYVTAGQQEKQEAV 298

Query: 311 MEI 313
            ++
Sbjct: 299 EKL 301


>gi|58583855|ref|YP_202871.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625654|ref|YP_453026.1| site-specific recombinase IntIA [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188574819|ref|YP_001911748.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58428449|gb|AAW77486.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84369594|dbj|BAE70752.1| site-specific recombinase IntIA [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188519271|gb|ACD57216.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 291

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 65/273 (23%), Positives = 117/273 (42%), Gaps = 52/273 (19%)

Query: 67  SYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
              E+ AF+++  T+  +   +  ++L+ +    + +   ++     + N+   K+   +
Sbjct: 11  DQIEVEAFLTELATRGQVSAGTQNQALAALLFLYREVLGVEL---PWMENLVRAKRPRRI 67

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P  L+ ++   L+             ++     +  LLYG G+R+ E L L  +++   +
Sbjct: 68  PVVLSAEEVARLL-----------TMLEGSCRLMAGLLYGSGMRLLECLRLRIKDVDVVR 116

Query: 186 STLRIQ-GKGDKIRIVPLLPSVRKAIL--------------------------------- 211
             + ++ GKG K R VPL  S+R  ++                                 
Sbjct: 117 GEIVVRVGKGGKDRWVPLPHSLRGELMQQRERALLLHAADLAEGAGRAFLPHALARKYPN 176

Query: 212 ---EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
              E+     F        P    +    ++  V QR ++  R+  GL    T HTLRHS
Sbjct: 177 ADVEHGWQYLFPAAPRSVDPRSGRVGRHHVSEKVLQRAVQAARQQAGLAKPATCHTLRHS 236

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           FATHLL  G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 237 FATHLLEAGHDIRTVQELLGHKDVATTQIYTHV 269


>gi|325270622|ref|ZP_08137220.1| phage integrase family integrase/recombinase [Prevotella
           multiformis DSM 16608]
 gi|324987017|gb|EGC19002.1| phage integrase family integrase/recombinase [Prevotella
           multiformis DSM 16608]
          Length = 330

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 59/296 (19%), Positives = 113/296 (38%), Gaps = 25/296 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              ++   +IE G S  TL  Y       L  L          + I  +   +IR ++S 
Sbjct: 56  LNAFIAAKKIE-GCSDKTLHYYRSSIEALLAKLN---------KKIDVIVTNDIRNYLSD 105

Query: 78  RRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            + +++  R ++        SF  +L+      +S +  +  ++  + +   L+++    
Sbjct: 106 YQEERLSSRVTIDNLRRIFSSFFAWLEDEDYIGKSPVRRIHKVRTESLVKEVLSDENMEV 165

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L D             + R+ A++ LL   G+R+ E   +  ++I   +    + GKG+K
Sbjct: 166 LRDTC----------HEIRDLAMIDLLASTGMRVGELAKMNREDIDFQERQCVVFGKGNK 215

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R V      +  +  Y +      + N  L +        L     +  +RQL R  G+
Sbjct: 216 EREVYFNARTKIHLKRYLESR---KDNNPALFVSLSSPHNRLTISGVEVRLRQLGRKAGI 272

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                 H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN  N      +
Sbjct: 273 SK-VHPHKFRRTLATMAIDKGMPIEQVQKLLGHVKIDTTLHYAMVNQTNVKIAHRK 327


>gi|163814364|ref|ZP_02205753.1| hypothetical protein COPEUT_00515 [Coprococcus eutactus ATCC 27759]
 gi|158449999|gb|EDP26994.1| hypothetical protein COPEUT_00515 [Coprococcus eutactus ATCC 27759]
          Length = 323

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 59/297 (19%), Positives = 119/297 (40%), Gaps = 27/297 (9%)

Query: 20  NWLQNLEIERGL---SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI- 75
           ++L      + L   S  T++ Y C+  + L        + I I  I+ ++   +R ++ 
Sbjct: 47  DFLDMFLTAKHLEGCSDKTIRYYRCNIEKML--------DTINIPVIK-ITTEMLRKYLV 97

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
             + T   G  ++      + +F  +L++     +S +  +  +K +  +   + +++  
Sbjct: 98  EYQTTNNCGKVTIDNIRRSLSTFFSWLEEEDYIIKSPMKRIHKVKTAVIVKDTIPDEKIE 157

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L DN            + R+ A++  L   G+R+ E + L   +I   +    + GKGD
Sbjct: 158 ILRDNC----------NNLRDRAMIDFLLSTGIRVGELVRLNIDDIDFSERECVVYGKGD 207

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R        +  +L Y +      + NI L +        L     +  +R++ + LG
Sbjct: 208 KERKAYFDAKTKIHLLNYIESRT---DNNIALFVSLNKPHSRLTESGVELRLREMGKKLG 264

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           +      H  R + AT  +  G  +  +Q ILGH ++ TT  Y  VN  N      +
Sbjct: 265 VEK-VHPHKFRRTMATRAIEKGMPIEQVQKILGHEQIDTTLRYAMVNQNNVKLSHRK 320


>gi|16519719|ref|NP_443839.1| putative integrase/recombinase of undefined transposable element
           [Sinorhizobium fredii NGR234]
 gi|2497416|sp|P55429|Y4EF_RHISN RecName: Full=Putative integrase/recombinase y4eF
 gi|2182375|gb|AAB91651.1| putative integrase/recombinase of undefined transposable element
           [Sinorhizobium fredii NGR234]
          Length = 251

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 69/241 (28%), Positives = 107/241 (44%), Gaps = 22/241 (9%)

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L   +IR +       +K+   S+  +LS ++ F     +R    E     +   KK   
Sbjct: 2   LGREDIRTYQVYLANEKKLAPGSIHIALSALRFFFNVTLERDWAPEEV---LPLPKKPQK 58

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L+  +    +  V           D ++ AIL   Y  GLRISEA+ L P +I   
Sbjct: 59  LPIILSPDEVQHFLGCV----------ADVKHHAILTTCYAAGLRISEAVQLKPTDIDSQ 108

Query: 185 QSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGV 242
           +  +R+  GKG K R V L P + + + +Y+ +         +  LF G R G P+    
Sbjct: 109 RMVVRVEHGKGQKDRYVMLSPKLLEILRDYWRMW------RPEAWLFPGDRAGHPITRYA 162

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             +   +      L    T H+LRH+F  HLL  G D+R+IQ +LGH  L+TT  Y  + 
Sbjct: 163 VGQACVKPHDLSRLSKPVTPHSLRHAFVVHLLEAGADVRTIQPLLGHRSLATTAHYLRIA 222

Query: 303 S 303
           +
Sbjct: 223 T 223


>gi|257486889|ref|ZP_05640930.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331013460|gb|EGH93516.1| Phage integrase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 319

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 63/277 (22%), Positives = 119/277 (42%), Gaps = 24/277 (8%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T ++Y+ D + F  F+     ++      R ++   + A+ ++   + +   +++R L
Sbjct: 39  PRTRRAYQIDLQDFCSFVGLAGADE-----FRAVTRAHVLAWRAQLEQRGLAGATIRRKL 93

Query: 93  SGIKSFLKYLKKRKITTE-SNILNMRNLKK---SNSLPRALNEKQALTLVDNVLLHTSHE 148
           + + S   +L +       + +  ++  +        P AL + QA  L+D         
Sbjct: 94  AALASLFDHLLENNAVAGGNPVHGVKRPRIDSNEGKTP-ALADHQAKALLD-----APPA 147

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSV 206
                 R+ A+L +L   GLR  EA  L   ++ + +    LR+QGKG K+R +PL P  
Sbjct: 148 ESLKGLRDRAVLAVLLYHGLRREEAAQLQTSDLQERRGIKHLRVQGKGGKLRWLPLHPVA 207

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKP----LNPGVFQRYIRQLRRYLGLPL-STT 261
            + I  Y +             LFR +RG+     L+     + +       G+ +    
Sbjct: 208 AERIYAYIEQNMERGAGYGS--LFRSLRGRSSGTGLSADGIYKIVCHWAISAGIKVEGLG 265

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            H LR + AT+ L +  D+  +Q  LGH  +STT++Y
Sbjct: 266 VHGLRATAATNALEHDADIAKVQIWLGHANISTTRLY 302


>gi|332994570|gb|AEF04625.1| integrase [Alteromonas sp. SN2]
          Length = 322

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 76/321 (23%), Positives = 131/321 (40%), Gaps = 62/321 (19%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           Q++   R  +K ++Q Y      ++ F       ++  +        E+  F+S    +K
Sbjct: 11  QHMRN-RRYAKRSIQLYSGWIVSYIRFHNTRHPAEMGDK--------EVELFLSHLVNKK 61

Query: 83  -IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +   +   +L+ +    + + ++ ++     L+    ++   LP  L + + + L    
Sbjct: 62  NVAPATQASALNALAFLYRDILEKPLSLS---LDFVTSRRQAKLPVVLTQDEVVALFAQ- 117

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV 200
                     + A     + LLYG GLR+ EA+ L  ++I  D + +RI  GKG K R+V
Sbjct: 118 ----------LPAHLKLPISLLYGSGLRLMEAVRLRVKDIDFDYNAIRIWDGKGGKHRVV 167

Query: 201 PLLPSVR-----------------------------KAILEYYDLCPFDLNLNIQLPLFR 231
            L   ++                               +   Y   P +L  +   P  R
Sbjct: 168 TLASELKPGLNRQISVVESYLIADLDNPSYQGVYLPHRLRVKYQNAPKELGWHYLFPSAR 227

Query: 232 --------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                     R   ++    Q+ IR      GL    T HTLRHSFATHLL +G D+R++
Sbjct: 228 LSVDPENGKTRRHHIDESSIQKAIRITASACGLKKKVTPHTLRHSFATHLLQSGADIRTV 287

Query: 284 QSILGHFRLSTTQIYTNVNSK 304
           Q+ LGH  + TTQIYT+V  +
Sbjct: 288 QTQLGHSDVKTTQIYTHVLQQ 308


>gi|34451618|gb|AAQ72365.1| putative integrase [Thermus sp. R]
          Length = 391

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 64/267 (23%), Positives = 115/267 (43%), Gaps = 19/267 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + + LE+E G S  T + Y  D   F  +               ++    IRAF++ R  
Sbjct: 88  FRRYLEMEEGRSPRTAKEYLMDAGLFARWFRERHGRPPR---WEEVGSQHIRAFLASRE- 143

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKK-RKI-TTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +      R L+ ++   +YL +   +   +     ++  K    LP  L   +   L+
Sbjct: 144 --VSPYRAGRVLASLRKLFRYLAEVEGLPLLKDPTEGVKRPKLPRRLPVYLTPPEVARLL 201

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKGD 195
                   + +  +  R+ A+L  LYG GLR+SEAL+LT  ++         +R+QGKG 
Sbjct: 202 Q---AAYQNRSPRVALRDWALLAFLYGTGLRLSEALALTYADLTYQDGIPHAIRVQGKGG 258

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG---IRGKPLNPGVFQRYIRQLRR 252
           K R+V L P+ ++A+ ++      + +              RGKP +    +  ++++ +
Sbjct: 259 KERVVVLSPTAQRALHQWLKHRNLEGHPTSPYIWSHTSGPNRGKPFSARAVEAMVKRVAK 318

Query: 253 YLGLP--LSTTAHTLRHSFATHLLSNG 277
             GL      T H LRHS+A+ L+  G
Sbjct: 319 RAGLKDWRRITPHKLRHSYASALVEAG 345


>gi|227529436|ref|ZP_03959485.1| phage integrase/recombinase [Lactobacillus vaginalis ATCC 49540]
 gi|227350646|gb|EEJ40937.1| phage integrase/recombinase [Lactobacillus vaginalis ATCC 49540]
          Length = 322

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 54/296 (18%), Positives = 119/296 (40%), Gaps = 29/296 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L   ++E G S+ T+  Y+   +    +L  +         +++++  ++R ++   +
Sbjct: 50  DYLAAKQVE-GCSEKTINYYQVTLKMMFSYLGKH---------VQKITTEDLRDYLGNYQ 99

Query: 80  TQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +   R ++        SF  +L+   +  +S +  +  +K S  +    +++    L 
Sbjct: 100 QSRNSSRVTIDNIRRIFSSFFSWLEDEDVIIKSPVRRIHKVKSSAKVKDTYSDEDLERLR 159

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D+              R+ A++ +L   G+RI E ++L   +I  D+    + GKG+K R
Sbjct: 160 DHCNSE----------RDVAMIDILASTGMRIGELVNLNQNDINFDERECVVLGKGNKQR 209

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGL 256
           IV      +  +  Y          +    LF  +    + ++    +  ++ L +  G+
Sbjct: 210 IVYFDARSKIHLQNYLAKR-----KDANSALFVSLHAPHQRMSINGIENRLKSLGKKAGI 264

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                 H  R + AT+ +  G  +  +Q +LGH R+ TT  Y  V   N       
Sbjct: 265 AK-VYPHKFRRTLATNAIDKGMPIEQVQKLLGHERIDTTLHYAMVKQSNVKIAHRR 319


>gi|227544652|ref|ZP_03974701.1| phage integrase/recombinase [Lactobacillus reuteri CF48-3A]
 gi|300909431|ref|ZP_07126892.1| phage integrase family integrase/recombinase [Lactobacillus reuteri
           SD2112]
 gi|227185377|gb|EEI65448.1| phage integrase/recombinase [Lactobacillus reuteri CF48-3A]
 gi|300893296|gb|EFK86655.1| phage integrase family integrase/recombinase [Lactobacillus reuteri
           SD2112]
          Length = 322

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 54/294 (18%), Positives = 119/294 (40%), Gaps = 25/294 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L   ++E G S+ T+  Y+   +    +L  +         +++++  ++R ++   +
Sbjct: 50  DYLAAKQVE-GCSEKTINYYQATLKMMFSYLGKH---------VQKITTEDLRDYLGNYQ 99

Query: 80  TQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +   R ++        SF  +L+   +  +S +  +  +K S  +    +++    L 
Sbjct: 100 QSRNSSRVTIDNIRRIFSSFFSWLEDEDVIIKSPVRRIHKVKSSAKVKDTYSDEDLERLR 159

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D+              R+ A++ +L   G+RI E + L   +I  D+    + GKG+K R
Sbjct: 160 DHCNSE----------RDVAMIDILASTGMRIGELVHLNQNDINFDERECVVLGKGNKQR 209

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IV      +  +  Y        + N  L +   +  + ++    +  ++ L +  G+  
Sbjct: 210 IVYFDARSKIHLQNYLAKR---KDANSALFVSLHVPHQRMSINGIENRLKNLGKRAGIAK 266

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
               H  R + AT+ +  G  +  +Q +LGH R+ TT  Y  V   N       
Sbjct: 267 -VYPHKFRRTLATNAIDKGMPIEQVQKLLGHERIDTTLHYAMVKQSNVKMAHRR 319


>gi|296162872|ref|ZP_06845653.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886909|gb|EFG66746.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 337

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 64/324 (19%), Positives = 122/324 (37%), Gaps = 21/324 (6%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M     P+  SF  L +   + + L  +R LS  T+  Y      FL F      ++ T 
Sbjct: 1   MRETLAPKQPSFAALVQT-FFTEYLVAQRALSPQTVACYRDALLLFLHFACRQLGKEPTT 59

Query: 61  QTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITT---ESNILNM 116
             +  +    I AF+    + +K   RS    L+ +++FLK+  +R + +       L +
Sbjct: 60  MRLADIQPNLILAFLDYLEQDRKNSVRSRNLRLTALRAFLKFAGRRDVASLHCVERALAV 119

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              +    +   L   + + ++            W   R+  +L +LY  G R+SE + +
Sbjct: 120 PMKRFERPMLNYLTRAEMVAVLGQP------GESWSSRRDHLLLTMLYNTGARVSEIIGV 173

Query: 177 TPQNIMDDQS-TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
              +++ D +  + ++GKG K+R +PL  +    I  +      +  +  +  L     G
Sbjct: 174 RVVDVVLDGAACVHLRGKGRKLRSIPLWDATVAEIRSWLRS---NSAMRGEAALLPNRDG 230

Query: 236 KPLNPGVFQRYIRQLRRYLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           + ++     + +              L    + H LRH+ A HLL        I   LGH
Sbjct: 231 QAMSRSNVAQRLDLAVSRASVEQPSLLKKRISPHILRHTTAMHLLQADVPFNVIALWLGH 290

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEI 313
               TT  Y   +       +  +
Sbjct: 291 ESPMTTHRYVEADLAMKEKALGRL 314


>gi|253577473|ref|ZP_04854788.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843173|gb|EES71206.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 326

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 76/326 (23%), Positives = 137/326 (42%), Gaps = 26/326 (7%)

Query: 1   MEGNNLPEI-----VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE 55
           M  ++ PEI       F+  +    +LQ+    R L+  T++ Y    ++    L     
Sbjct: 1   MPNHDHPEINLLHQTDFKWSELVSLFLQDCRS-RNLTNETIRRYRNGLKKLQQHLGS--- 56

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           + + +  +  L  +     I     + +  R++  +L  +K F K+L +  I   +    
Sbjct: 57  QNLKLNDLTDLLLSH--RIIPSMLDEGLALRTINCNLCILKEFFKFLYEDGIAEANIAAE 114

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +R LK   SL     +     L           + +   RN  I+ +L   G+R+ E  +
Sbjct: 115 LRPLKVKTSLTHTFTDGHLQRLF-----VQPDRSTFTGYRNYVIMLVLLETGIRLKELAN 169

Query: 176 LTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           L   N+  D+ TLRI QGKG K R+VP+       + +Y               L+  + 
Sbjct: 170 LRVTNVFLDEGTLRIIQGKGRKARMVPIQHVAAFELKQYMFERGTLETDR----LWVTLD 225

Query: 235 GKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
             P      +  I +      +  +  + HT RH+FA   L NGGD+ +++SILGH R+ 
Sbjct: 226 NHPFYEAGIRVMISRYCIAANIQGVQCSCHTFRHTFAKKYLMNGGDVFTLKSILGHERIE 285

Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHP 319
           TT++Y  + S++    M   +++  P
Sbjct: 286 TTEMYVELFSRD----MQIQHEKFSP 307


>gi|210619453|ref|ZP_03292039.1| hypothetical protein CLONEX_04273 [Clostridium nexile DSM 1787]
 gi|210148851|gb|EEA79860.1| hypothetical protein CLONEX_04273 [Clostridium nexile DSM 1787]
          Length = 288

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/286 (24%), Positives = 127/286 (44%), Gaps = 28/286 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           RGL+  T++SY      +  FL          ++   +++ E+R F+   + T+ + DR+
Sbjct: 15  RGLTDHTIKSYSTYILAYFDFLTDVIH-----KSPEDVTWDEMRQFVRWLQDTRSLSDRT 69

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           +   +S ++ F  Y+  +      +   +   K  N LP   ++++  T +         
Sbjct: 70  MNAVISQLRFFTIYVLHKPW----DATQLPFRKFDNYLPYVPSQQEVKTFI--------- 116

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
            +   D +  A++ L+Y  GLRI E   L  Q+I      + I  GK    R   L  + 
Sbjct: 117 -STIPDLKQKAMVSLMYSSGLRIGEVCHLKYQDIERRNMRIHISHGKNRSDRYALLSKTA 175

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            + + +Y+              LF   R   +P++     R+I +  R LG P   T H+
Sbjct: 176 LEILSQYWFAYD-----KPVDWLFPKQRDKSQPIDTFYLSRHIHEHERRLGWPERITCHS 230

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            RH+F THL  NG DL +IQ+ LGH  L++T IY ++ + +    +
Sbjct: 231 FRHAFGTHLYENGADLLTIQAYLGHKSLASTSIYVHLATNSMHKAV 276


>gi|78045912|ref|YP_362087.1| putative integrase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78034342|emb|CAJ21987.1| putative integrase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 349

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 125/311 (40%), Gaps = 60/311 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           R  S  T Q+Y    R+F++                Q+   E+ AF++   T+  +   +
Sbjct: 53  RHYSLRTEQAYVGWIRRFILANGKRHPG--------QMGQVEVEAFLTDLATRGQVSAGT 104

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++L+ +    + +   ++     + N+   K+   +P  L+ ++   L+         
Sbjct: 105 QNQALAALLFLYREVLGVEL---PWMENLVRAKRPRRIPVVLSAEEVARLL--------- 152

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
               ++     +  LLYG G+R+ E L L  +++   +  + ++ GKG K R VP   S+
Sbjct: 153 --TMLEGSCRLMAGLLYGSGMRLLECLRLRIKDVDVVRGEIVVRDGKGGKDRRVPPPHSL 210

Query: 207 RKAILEYY------------------------------------DLCPFDLNLNIQLPLF 230
           R  +++                                          F        P  
Sbjct: 211 RGELMQQRERALLLHAADLAEGAGRVFLPHALARKYPNANVEPGWQYLFLAARRSVDPRS 270

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +    ++  V QR ++  RR  G+    T HTLRHSFATHLL  G D+R++Q +LGH 
Sbjct: 271 GRVGRHHVSEEVLQRAVQSARRQAGIAKPATCHTLRHSFATHLLEAGHDIRTVQELLGHK 330

Query: 291 RLSTTQIYTNV 301
            ++T QIY +V
Sbjct: 331 DVTTKQIYAHV 341


>gi|159901675|ref|YP_001547921.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894714|gb|ABX07793.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 291

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 125/292 (42%), Gaps = 30/292 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ  + +++I RGLS  T  +Y    RQ   +               +LS  ++R +   
Sbjct: 6   RQRMIDDMQI-RGLSAQTQSAYVQAVRQLAQYFN---------TPPDRLSDDQLRRYFLY 55

Query: 78  RRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            RT+K +   ++  +L  I+   ++  +R       +L+     K+  LP  L+  +   
Sbjct: 56  LRTEKQVSASTITVTLCAIRFLYQHTLQRSW----PLLDALRPPKAQPLPVVLSRDEVRA 111

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGD 195
           ++  V             R+   L ++Y CGLR+ E + L   NI   +  L IQ GKG+
Sbjct: 112 ILHQVRT----------PRHRVCLSIIYACGLRLMEGVRLQVCNIDSARLMLHIQHGKGN 161

Query: 196 KIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           K R +PL P     +  ++           +  +   L    R   ++    QR      
Sbjct: 162 KDRYIPLPPPALAMLRAHWRSHQHPRWLFPSHWVDKALPIAARSVSMSRDGVQRAFLLAC 221

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +  G+    T HTLRHS+ATHLL  G +LR IQ  LGH   +TT  YT++  
Sbjct: 222 QASGMRKHATVHTLRHSWATHLLEAGVNLRIIQGWLGHTSPTTTAHYTHLTQ 273


>gi|307149687|ref|YP_003890995.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306986753|gb|ADN18630.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 286

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/303 (24%), Positives = 127/303 (41%), Gaps = 36/303 (11%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           LK  Q WL       G S  + +SY  D + FL F         T + I Q++  +I  +
Sbjct: 12  LKLIQMWLH------GKSPDSRRSYMRDIQDFLEF---------THKPIEQITIADIIDW 56

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEKQ 133
            S     +    S KR L+ IKS   +  K ++ + +    + + K  +++  R L E +
Sbjct: 57  DSAL-ALRYAPTSRKRKLAAIKSLFSFAHKNELISTNPGAAVPSPKTKDAISERILTEDE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRI 190
              ++              + ++  +L LLY    R+SE  +L  ++I    D  + + +
Sbjct: 116 WERMLYAE----------PNRQHQLMLTLLYETRARVSEFCALKWKDIREKPDGAALVTL 165

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG+K R V + P + + +           +     PLF   R K  +     R ++  
Sbjct: 166 FGKGNKTRKVTITPQLWQVLK-----ATKAADAKGDSPLFLNYRHKAYSTVQVWRIVKAA 220

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              +G+    + H +RH+ ATH L NG  L   Q  LGH  L+TT  Y ++   + G   
Sbjct: 221 GERVGI-YGVSPHWIRHTGATHQLINGSPLHLQQQELGHSGLNTTSKYLHILPGDYGAQY 279

Query: 311 MEI 313
            ++
Sbjct: 280 TKV 282


>gi|160938914|ref|ZP_02086265.1| hypothetical protein CLOBOL_03808 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437877|gb|EDP15637.1| hypothetical protein CLOBOL_03808 [Clostridium bolteae ATCC
           BAA-613]
          Length = 350

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/310 (21%), Positives = 123/310 (39%), Gaps = 23/310 (7%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFL-------AFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           IE   S  T  +Y  D   F  FL       A  T + I +  + QLS T+   ++   +
Sbjct: 36  IEPRTSSRTRIAYAYDLHVFFDFLHKENPALARITVQDIKLDQLDQLSVTDFEEYMEYLK 95

Query: 80  TQ--------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
            +           +R + R +S +KSF  Y  + +    +    ++  K        L+ 
Sbjct: 96  YRFNDKNQEVMNKERGIMRKISSLKSFYNYYYRNERIKNNPAALVQLPKLHEKEIIRLDV 155

Query: 132 KQALTLVDNVLLHTSHETKWIDAR------NSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
            +   L+D V        K  +        + A+L LL G G+R+SE + L   +I    
Sbjct: 156 DEVALLLDEVEQGDKLTDKQKNYHAKTKTRDLALLTLLLGTGIRVSECVGLNISDIDFKN 215

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQ 244
             +RI  KG K   V     V  A+L+Y +     +     +  LF  ++ + +     +
Sbjct: 216 GGIRIYRKGGKEVTVYFGTEVEDALLDYLEERDRIIPEQGHEDALFLSLQRRRMAVRSVE 275

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI-YTNVNS 303
             +++  R +      T H LR ++ T+L    GD+  +  +LGH  ++TT+  Y  +  
Sbjct: 276 NLVKKYARTVAPLKPITPHKLRSTYGTNLYRETGDIYLVADVLGHSDVNTTKRHYAALED 335

Query: 304 KNGGDWMMEI 313
           +       ++
Sbjct: 336 ERRRSARNKV 345


>gi|254457347|ref|ZP_05070775.1| phage integrase [Campylobacterales bacterium GD 1]
 gi|207086139|gb|EDZ63423.1| phage integrase [Campylobacterales bacterium GD 1]
          Length = 278

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 83/300 (27%), Positives = 152/300 (50%), Gaps = 38/300 (12%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +LQ+LE  RG S+LT++SY+    + L +          ++ I + ++T I     + +
Sbjct: 11  EFLQSLEDFRGYSELTIKSYDEAITEALRY----------VEIIEEDTHTTINLMPYRIK 60

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
             ++  +++ + LS I++F+KYL   KI  +  +    ++K + +LP+ ++ K  L  ++
Sbjct: 61  ISQLNPKTISKKLSAIRTFVKYLNDNKI--KIYLKADESVKVAKTLPKPISHKHILEALE 118

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           +            +     ++ +LY  GLRISE  SL   +I D+   +R+ GKG+K R 
Sbjct: 119 H-----------AEFYERFVVTMLYSLGLRISELASLKLSDISDE--WIRVLGKGNKHRD 165

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPLL + R+ I EY            ++ LF     + L+    +  + ++ + +GL   
Sbjct: 166 VPLLRTTRELIDEYLSNNC------PKIFLFE-ANDERLSENSLRYTVNKVFKRVGL--K 216

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T H LRHS+AT LL++   +  +  +LGH  ++TTQIYT +    G     + Y++ HP
Sbjct: 217 VTPHQLRHSYATALLNSSAPIADVSELLGHSSMATTQIYTKL----GSALKQQNYNKAHP 272


>gi|94499085|ref|ZP_01305623.1| site-specific recombinase, phage integrase family protein
           [Oceanobacter sp. RED65]
 gi|94428717|gb|EAT13689.1| site-specific recombinase, phage integrase family protein
           [Oceanobacter sp. RED65]
          Length = 319

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 74/316 (23%), Positives = 128/316 (40%), Gaps = 61/316 (19%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSL 88
           G S+ T+++Y    + F+ F      E         L   E+ +F+S   + K +   S 
Sbjct: 18  GYSERTIKTYIYWIKYFIHFHGKRHPET--------LHNDEVCSFLSHLASNKHMAINSQ 69

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           K +L+ +        K+ +      L     ++   LP+ L +++   +++         
Sbjct: 70  KTALNALAFLYNQFLKQPLGD----LGFVYAQRQRRLPQVLTQQEVKRIINE-------- 117

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-RIQGKGDKIRIVPLLPSVR 207
              +  R+  I+ L+YG GLRISE L L  ++I  +  +L  I GKG K R   L  ++ 
Sbjct: 118 ---LGERDRLIVSLMYGSGLRISECLRLRVKDIHFETGSLDVIDGKGGKDRKTILSKNIV 174

Query: 208 -----------------------------------KAILEYYDLCPFDLNLNIQLPLFRG 232
                                               A  +   +  F      + P+   
Sbjct: 175 GDLQNQIQNSIALQEKDNLSGLGPSLPGALGRKLPNAYRQPAWMFVFPSTTICKHPITGI 234

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
                L+  V ++ + +  +  G+     T HT RHSFAT LL  G D+R++Q +LGH  
Sbjct: 235 HCRHHLHETVMRKALAKACKSAGIYNKRITCHTFRHSFATELLRAGRDIRTVQELLGHKD 294

Query: 292 LSTTQIYTNVNSKNGG 307
           +STTQIYT+V  ++  
Sbjct: 295 VSTTQIYTHVVGQHFA 310


>gi|291528623|emb|CBK94209.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 282

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 123/293 (41%), Gaps = 34/293 (11%)

Query: 18  RQNWLQNLEI---ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
            + +L  LE     R L + ++  Y+     FL ++  + EE         L+  ++R F
Sbjct: 2   YEKYLLQLEEAGKIRNLKERSINCYKNYVSYFLNYMEKHPEE---------LTCQDVRDF 52

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +  ++   +   +L    S I+ F + +    +  +   + +  +   + LP  L+  + 
Sbjct: 53  LLAKKDDGLKATTLNLYNSAIRFFYRNVL--HVLWDD--ITVPRMIIEHKLPTILSTDEI 108

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D             D +  A+   +Y  G+R+SE + L   +I      + ++   
Sbjct: 109 DRLLDATD----------DLKYKAMFATMYSSGMRVSEVIHLHYDDISRTNMQIHVRDTK 158

Query: 195 DK-IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRR 252
           ++  R   L       + EY+           +  LF        L     ++ IR+   
Sbjct: 159 NRMDRYTILSERNLALLTEYWFQ-----KGRPKGILFPNQFTGQYLTVSTLEQVIRRSAS 213

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             GL    T H LRHSFATHL+  G + R+IQ++LGH    +T++Y +V++K+
Sbjct: 214 AAGLS-GVTPHCLRHSFATHLMEQGVEQRNIQALLGHRDPKSTEVYLHVSNKS 265


>gi|319427383|gb|ADV55457.1| ISSod25 integrase [Shewanella putrefaciens 200]
          Length = 287

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 124/292 (42%), Gaps = 36/292 (12%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q +   + + RG S  T  +Y     Q   +           Q +  ++  ++ A+   
Sbjct: 5   LQQFHDEIRL-RGYSARTRSAYLRAITQLQHYAN---------QPLDSITDEQLTAYFRY 54

Query: 78  RR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               +     +LK  L+GI    +++  R        + +   K+ + LP+ L+ +    
Sbjct: 55  LNLERHHSRATLKLQLNGIHFLYEHVLGRDF-----TVQLSLPKRPHKLPQLLSCQDIAA 109

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195
           L+ +            + +  A+L L YGCGLR+SE   +   +I   +  L++ QGKG 
Sbjct: 110 LLYHC----------QNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGA 159

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG---KPLNPGVFQRYIRQLRR 252
             R+V + P++   + +Y+              LF         PL+   F++ + +  R
Sbjct: 160 YDRLVIISPTLLTLLRQYWRAYH------PVEWLFASTYHDVVYPLHESTFRKALAKSAR 213

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             G+    + H+LRH++ATH L  G  L  +Q+ LGH  + +T+ Y + + +
Sbjct: 214 LAGITKPCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPE 265


>gi|295087379|emb|CBK68902.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 351

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/341 (22%), Positives = 143/341 (41%), Gaps = 23/341 (6%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQ-NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
           M+    P+ +  ++     +WL+  +   +  S  T ++Y+   + ++ FL         
Sbjct: 1   MKKKINPQAM--QIADYLHDWLEHYVPSIKACSPHTKRNYKISVKLYVEFLRVIKGTTPE 58

Query: 60  IQTIRQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL---N 115
             +        I  +I   +  +     +    LS ++ FLKYL  R I+  S  L   N
Sbjct: 59  TLSAECFCMEYIMEWIIWLKENRGCSPATCNVRLSALRVFLKYLSFRDISYMSVFLQAEN 118

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           + N K S      L+++       +VLL   ++   I  R+  ++ LLY   +RI+E L+
Sbjct: 119 VPNEKNSKRKVIGLSKQAV-----DVLLSMPNQGSTIGFRDYTLMLLLYSTAVRINELLT 173

Query: 176 LTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
           L   NI+ D  +  + + GKG K R +PLL    + +  Y        N +    LF   
Sbjct: 174 LKISNIVIDCVKPHIIVIGKGRKKRPIPLLAKPAQCLKRYLIKYHPKQN-DANALLFCSK 232

Query: 234 R---GKPLNPGVFQRYIRQLRRYLG-----LPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
                 P++     + +++           +P+   AH  RH+ A+H L NG ++  I  
Sbjct: 233 SKGIYVPMSAENVNKMLKKYATMAHERCQDVPMDLHAHQFRHAKASHWLENGMNIAQISY 292

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
           +LGH  + TT +Y ++ +K     +  +  +    + +K K
Sbjct: 293 LLGHESIQTTMVYLDITTKQEEKALETLEGENQKKMRKKWK 333


>gi|325929257|ref|ZP_08190393.1| integron integrase [Xanthomonas perforans 91-118]
 gi|60550151|gb|AAX24163.1| truncated integrase [Xanthomonas perforans]
 gi|60550154|gb|AAX24165.1| truncated integrase [Xanthomonas perforans]
 gi|325540396|gb|EGD12002.1| integron integrase [Xanthomonas perforans 91-118]
          Length = 315

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 125/311 (40%), Gaps = 60/311 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           R  S  T Q+Y    R+F++                Q+   E+ AF++   T+  +   +
Sbjct: 19  RHYSLRTEQAYVGWIRRFILANGKRHPG--------QMGQVEVEAFLTDLATRGQVSAGT 70

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++L+ +    + +   ++     + N+   K+   +P  L+ ++   L+         
Sbjct: 71  QNQALAALLFLYREVLGVEL---PWMENLVRAKRPRRIPVVLSAEEVARLL--------- 118

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
               ++     +  LLYG G+R+ E L L  +++   +  + ++ GKG K R VP   S+
Sbjct: 119 --TMLEGSCRLMAGLLYGSGMRLLECLRLRIKDVDVVRGEIVVRDGKGGKDRRVPPPHSL 176

Query: 207 RKAILEYY------------------------------------DLCPFDLNLNIQLPLF 230
           R  +++                                          F        P  
Sbjct: 177 RGELMQQRERALLLHAADLAEGAGRVFLPHALARKYPNANVEPGWQYLFLAARRSVDPRS 236

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +    ++  V QR ++  RR  G+    T HTLRHSFATHLL  G D+R++Q +LGH 
Sbjct: 237 GRVGRHHVSEEVLQRAVQSARRQAGIAKPATCHTLRHSFATHLLEAGHDIRTVQELLGHK 296

Query: 291 RLSTTQIYTNV 301
            ++T QIY +V
Sbjct: 297 DVTTKQIYAHV 307


>gi|307720464|ref|YP_003891604.1| integrase family protein [Sulfurimonas autotrophica DSM 16294]
 gi|306978557|gb|ADN08592.1| integrase family protein [Sulfurimonas autotrophica DSM 16294]
          Length = 278

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 77/304 (25%), Positives = 141/304 (46%), Gaps = 38/304 (12%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K ++ +L +LE  RG S+LT+++Y     +   ++    E+  T+  +        R +I
Sbjct: 7   KYKKEFLVSLEEYRGYSELTVKTYADVLGEAFQYIEIVQEDGHTVFNLMP-----YRIYI 61

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +      +  +++ + LS I+SF+++L ++ +          ++K + +LP+ ++    L
Sbjct: 62  A-----GLNAKTISKKLSAIRSFVEFLNEQGLHVALQAD--ESIKVAKTLPKPVSHAHIL 114

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
             +    L               +  +LY  GLRISE  SL           +R+ GKG+
Sbjct: 115 EALSQSDLQE-----------KLLAVMLYTLGLRISELASLEL--HNITNEWIRVIGKGN 161

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R +PLL + R  I EY           ++  LF    G+ L+    +  I ++ + + 
Sbjct: 162 KQRDIPLLGTTRALIDEYLSTFV------VKKFLFE-KNGERLSENSLRYMITKIFKRVA 214

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L    T H LRHS+A+ LL+ G  +  +  +LGH  ++TTQIYT +    G     + Y+
Sbjct: 215 L--KVTPHQLRHSYASSLLNGGAPIVDVSELLGHSSMATTQIYTKL----GSALKQQNYN 268

Query: 316 QTHP 319
           + HP
Sbjct: 269 KAHP 272


>gi|254445476|ref|ZP_05058952.1| integron integrase subfamily, putative [Verrucomicrobiae bacterium
           DG1235]
 gi|198259784|gb|EDY84092.1| integron integrase subfamily, putative [Verrucomicrobiae bacterium
           DG1235]
          Length = 459

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/317 (21%), Positives = 121/317 (38%), Gaps = 55/317 (17%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA---FISKRRT-QKIG 84
           +G +  T +SY   T +   +        + +++  Q      RA   F+      + + 
Sbjct: 145 KGRALKTEKSYVTWTGRLRRWWKVQGVGSVGLESREQAGEELERAISGFLDHIAVVEGVA 204

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             + +++L+ +    +            +   R   +  +LP  L++ +    +D V L 
Sbjct: 205 VATQRQALNALIFAFRACLG---IEPGLLPEYRGATRGRALPVVLSKGEIGRFLDCVELK 261

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLL 203
                         ++ LLYG GLR+SEAL L  +++     ++ ++ GKG K R   L 
Sbjct: 262 VG-----------VLVKLLYGGGLRLSEALRLRVKDLDFAHGSVVVRDGKGGKDRRTTLP 310

Query: 204 PSVR------------------------------------KAILEYYDLCPFDLNLNIQL 227
             +                                      A  E+     F  +  ++ 
Sbjct: 311 AGLVGPLREQLRKVRVLFDKDRAEGRDGVYLPNKLERKYPNASREWIWQYVFPTDKLVKD 370

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           P     R       V QR ++      G+    T H +RHSFATHLL +G D+R++Q +L
Sbjct: 371 PRSEAFRRHHWGERVIQRAVKDAAMAAGIHKRVTPHVMRHSFATHLLEDGYDIRTVQELL 430

Query: 288 GHFRLSTTQIYTNVNSK 304
           GH  + TT IY +V ++
Sbjct: 431 GHASVETTMIYLHVMNR 447


>gi|331266258|ref|YP_004325888.1| integrase/recombinase, phage integrase family protein
           [Streptococcus oralis Uo5]
 gi|326682930|emb|CBZ00547.1| integrase/recombinase, phage integrase family protein
           [Streptococcus oralis Uo5]
          Length = 321

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 123/298 (41%), Gaps = 29/298 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q ++   ++E G S  T++ Y+         +          +++ QL+  ++R++++ 
Sbjct: 47  LQLFITAKQVE-GCSAKTIRYYQRTIENLFHHIK---------ESVTQLTTDDLRSYLAN 96

Query: 78  RRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            +++K     +L      + SF  +L++ +   ++ I  ++ +K   ++     ++    
Sbjct: 97  YQSEKDCSKANLDNIRRILSSFFAWLEQEEYIIKNPIRRIKKIKTEQTVKETYTDEHLEI 156

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           + DN            + R+ A++ LL   G+R+ E + L   +I  +     + GKG K
Sbjct: 157 MRDNCE----------NLRDLAMIDLLASTGMRVGELVQLNRSDIDFENRECVVFGKGKK 206

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--RGKPLNPGVFQRYIRQLRRYL 254
            R V      +  +  Y +        +    LF  +  + + L     +  +R+L + L
Sbjct: 207 ERPVYFDARTKIHLRNYLNDR-----KDSHPALFVTLLGKAQRLGIAGVEIRLRKLGQKL 261

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           G+      H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN  N      +
Sbjct: 262 GIQK-VHPHKFRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYAMVNQSNVKHSHQK 318


>gi|325922658|ref|ZP_08184403.1| integron integrase [Xanthomonas gardneri ATCC 19865]
 gi|325546862|gb|EGD17971.1| integron integrase [Xanthomonas gardneri ATCC 19865]
          Length = 298

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 68/281 (24%), Positives = 120/281 (42%), Gaps = 52/281 (18%)

Query: 59  TIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
             +   Q+   E+ AF+++  T   +   +  ++L+ +    + + +        + N+ 
Sbjct: 10  GKRHPAQMGQAEVEAFLTRLATDGQVSAGTQNQALAALLFLYREVLR---IELPWMENLV 66

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             K+   +P  L   +   L+             ++     +  LLYG G+R+ E L L 
Sbjct: 67  RAKRPRRIPVVLARAEVARLL-----------AVLEGPCWLMASLLYGSGMRLMECLRLR 115

Query: 178 PQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI----------- 225
            +++   +  + ++ GKG K R VPL  S+R+A+    +        ++           
Sbjct: 116 IKDVDAARGEIVVRDGKGGKDRRVPLPLSLREALQRQRERALVVHAADLAAGTGRVFLPH 175

Query: 226 --------------QLPLFRGIRG-----------KPLNPGVFQRYIRQLRRYLGLPLST 260
                            LF   R              ++  V QR ++  RR  G+  S 
Sbjct: 176 ALARKYPNADAEPGWQYLFPSARQSRDPRSGRVGRHHVSEEVLQRAVQVARRRAGIAKSA 235

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T HTLRHSFATHLL +G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 236 TCHTLRHSFATHLLEDGHDIRTVQELLGHKDVATTQIYTHV 276


>gi|260770269|ref|ZP_05879202.1| integron integrase IntI4 [Vibrio furnissii CIP 102972]
 gi|260615607|gb|EEX40793.1| integron integrase IntI4 [Vibrio furnissii CIP 102972]
          Length = 329

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 75/315 (23%), Positives = 120/315 (38%), Gaps = 61/315 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRS 87
           R  ++ T++SY     Q++ F       K+  +        ++ AF+S    ++++   +
Sbjct: 16  RHYARKTIESYLYWVVQYIRFHGNQHPNKLGNR--------DVEAFLSDLVVSKQVAAST 67

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
              +L+ +    K   K+ +  +   L  R+ KK   LP  L   +   L   +   T  
Sbjct: 68  QNLALNALVFLYKEFLKKPLDID---LRFRHSKKQRKLPVVLTPTEIKKLFAAIPAQTLL 124

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSV 206
                         L+YG GLR+ E + L  ++I  D   +R  Q KG K R+V L   +
Sbjct: 125 PY-----------QLMYGSGLRLMETIRLRVKDIDFDYGAIRGWQSKGGKSRVVTLAKEL 173

Query: 207 R-----------------------------KAILEYYDLCPFDLNLNIQLPL-------- 229
                                           + E Y      L      P         
Sbjct: 174 HPLLRFQIETVKHLYTQDQLNPNYDGVQMPNRLAEKYPSASKSLEWQFLFPAKQLCRYGD 233

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
             G     L+    Q+ I + R    +    + HTLRHSFATHLL  G D+R++Q  LGH
Sbjct: 234 KPGWYRHHLHETTLQKTIIKARFTAEIAKPLSCHTLRHSFATHLLEAGADIRTVQEQLGH 293

Query: 290 FRLSTTQIYTNVNSK 304
             + TTQIYT+V  +
Sbjct: 294 SDVKTTQIYTHVIER 308


>gi|291516261|emb|CBK69877.1| Site-specific recombinase XerD [Bifidobacterium longum subsp.
           longum F8]
          Length = 319

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/296 (21%), Positives = 120/296 (40%), Gaps = 31/296 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK--- 77
           +L   E+E G S  T+  YE   +     LA         +   +++  ++R ++++   
Sbjct: 48  FLTAKEVE-GCSPKTIAYYESTLQHMTQALA---------KPCTRINSDDLREYLNRYEN 97

Query: 78  -RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            R   K+   +++R +S   SF  +L+      +S +  +  +K +      L+++   T
Sbjct: 98  ERHAGKVTIDNIRRIMS---SFFAWLEDEDYIVKSPVRRIHRVKTAVMAKEVLSDENLET 154

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L D               R+ AI+ +L   G+R+ E + L   ++   +    + GKG+K
Sbjct: 155 LRDRC----------GTLRDLAIVDILASTGMRVGELVGLNIADVNLQERECLVTGKGNK 204

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R V      +  +  Y        + N  L +     G  ++ G  +  +RQL +  G+
Sbjct: 205 QRPVYFDARTKLHLTAYLQSRN---DSNPALFVALNGDGDRISIGGIESRLRQLGKDAGI 261

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                 H  R + ATH +  G  +  +Q +LGH R+ TT  Y  VN  N       
Sbjct: 262 HR-VHPHKFRRTLATHAIDKGMPIEQVQKLLGHARIDTTMHYAMVNQNNVKASHRR 316


>gi|88797010|ref|ZP_01112600.1| tyrosine recombinase [Reinekea sp. MED297]
 gi|88779879|gb|EAR11064.1| tyrosine recombinase [Reinekea sp. MED297]
          Length = 317

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 77/306 (25%), Positives = 127/306 (41%), Gaps = 19/306 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L++  + RG +  T+   E    +F  +         +   I        R F+ K R 
Sbjct: 17  FLEDC-LARGQADATVDGKEVLCLRFFDWCTHQGVH--SEHDIDLALLEAYRRFLYKYRK 73

Query: 81  QK----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL-NEKQAL 135
            +    +   + +  L  + SFLK L   ++         R  +    LP+ + + +Q  
Sbjct: 74  ARTAMPLALSTQRARLMAVTSFLKCLYYHEMIASDFYTKFRLPRVRKRLPKTIPDVEQIE 133

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKG 194
            L+   +   +     I  R+ AIL L Y    R +E  +L  ++I   + T+ I  GKG
Sbjct: 134 QLIRQTMTKGA-----IGLRDRAILELFYASAPRRAELANLDIRDIDFKRGTVTIHKGKG 188

Query: 195 DKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           D+ R+VP+       I  Y D L P    L+    LF G  GK +        + +    
Sbjct: 189 DQDRVVPVGERALFWIKSYLDKLRPLHARLDSGEALFLGTTGKRIRKSTLTDLVHEYILR 248

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +    + H LRH+  TH+  NG +LR +Q  LGH    TT+IYT+V  ++    +   
Sbjct: 249 SAVADKGSCHLLRHTTPTHMHRNGAELRDLQEFLGHEDPKTTEIYTHVTIRD----LKRT 304

Query: 314 YDQTHP 319
           Y  THP
Sbjct: 305 YKSTHP 310


>gi|312136007|ref|YP_004003345.1| integrase family protein [Caldicellulosiruptor owensensis OL]
 gi|311776058|gb|ADQ05545.1| integrase family protein [Caldicellulosiruptor owensensis OL]
          Length = 291

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/308 (23%), Positives = 136/308 (44%), Gaps = 27/308 (8%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +   + + ++L+ + G S+ T+ SY  D  +FL +       K   + + Q    E R +
Sbjct: 1   MDWLKKFEEDLK-QTGKSQNTVASYCADINEFLQWFEETYANKFDGRILEQ-DAREYRNY 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +      K    S+ R ++ +K+F ++L +    TE NI  +      +   + ++ K+ 
Sbjct: 59  L--LNVVKQKPSSINRKMASLKNFNQFLIQVGTGTEVNICGISVADIHDREIKTISRKEL 116

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-------T 187
             L   V    +         + A++ LL   G+R+SE +SLT Q+I   +         
Sbjct: 117 NRLKRAVYASGNKR-------DIALIELLINTGVRVSELVSLTVQDIHLTERNGSQNYSY 169

Query: 188 LRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           + ++ GKG+K R +PL   V++A+ EY          +    +F   RG PL      + 
Sbjct: 170 IAVRNGKGNKYREIPLNSQVKRALEEYLSTR-----SSSSDKIFISQRG-PLRRESVDKI 223

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKN 305
           I++  R  G+    +AH LRH+F T L++    L  I  + GH  + TT   Y  V+  +
Sbjct: 224 IKKYCRLAGIE-EISAHVLRHTFCTRLVAENVPLPIISKLAGHLSVQTTMDFYVRVSRAD 282

Query: 306 GGDWMMEI 313
               + ++
Sbjct: 283 KAAAVEKL 290


>gi|270307506|ref|YP_003329564.1| site-specific recombinase, phage integrase family [Dehalococcoides
           sp. VS]
 gi|270153398|gb|ACZ61236.1| site-specific recombinase, phage integrase family [Dehalococcoides
           sp. VS]
          Length = 332

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 68/279 (24%), Positives = 123/279 (44%), Gaps = 20/279 (7%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            LS  T+ +Y     +F+ F +        + T  Q++   +  FI + +      +S+ 
Sbjct: 42  QLSPATIHNYSYMVGKFIDFCSRN-----GVSTPPQITQLVVCLFIQELQMTN-SAQSVL 95

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
                ++ F+ +L++    +   + N+R  K    + +  N++Q  TL+D V L T    
Sbjct: 96  DYFKQVRRFINWLRENDQISIDPLKNIRLPKVPRRIIQPFNKEQCQTLLDLVSLPTLEAR 155

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           +     N AIL +    G+R  E   +  +++  +  T++I GKG K R+V +    +KA
Sbjct: 156 R-----NKAILMVFMDTGIRCQELADMKLEDLNFETETIKIFGKGAKERVVRISRRTQKA 210

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP--------GVFQRYIRQLRRYLGL-PLST 260
           +LEY       +  +    ++        +            +R I  L +  G+  L  
Sbjct: 211 LLEYQFERMKLMPNDKCPFVWVSRLKNRYSRKQSHQLTNDGIRRMIENLGKKAGIQNLRC 270

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           + HT RH+FAT  L NG     +QS+LGH  L+ T+ YT
Sbjct: 271 SPHTFRHTFATMSLLNGAGEFELQSLLGHSTLTMTRRYT 309


>gi|12667367|gb|AAK01408.1|AF324211_1 site-specific tyrosine recombinase IntIA [Shewanella putrefaciens]
          Length = 317

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/313 (24%), Positives = 127/313 (40%), Gaps = 58/313 (18%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RG S  T +SY    + F+ F      E +  + + Q        F++ +R   +   + 
Sbjct: 18  RGYSIRTEKSYLYWIKAFINFHHKRHPETMGTEEVAQF-----LTFLANQR--NVAINTQ 70

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           K +L+ +    +     ++      L      K   LP  L+  +   +++         
Sbjct: 71  KIALNALAYLYQKHLHHELGN----LGFCYATKQRYLPTVLSPSEISLILNE-------- 118

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVR 207
              +D R+  I+  LYG GLR+SE L L  Q+I  +Q++L ++ GKG K R   L     
Sbjct: 119 ---LDGRDRLIIERLYGSGLRVSECLRLRIQDIDIEQASLTVRDGKGHKDRQTILSHKCA 175

Query: 208 KAILEYYDLCPFDLNLNIQL-----------------------------------PLFRG 232
             +  Y +      + + Q                                    P    
Sbjct: 176 IKLAAYINKAMEIQHSDNQQGIGHALPNALERKYPNAFKQHGWMFIFPSTTTSINPYTGT 235

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +    L+  V ++ +    R + +    T HT RHSFATHLL +G D+RS+Q +LGH  +
Sbjct: 236 LCRHHLHQSVIRKVLGNAVRNIKITKRVTCHTFRHSFATHLLQSGSDIRSVQELLGHNDV 295

Query: 293 STTQIYTNVNSKN 305
           STTQIYT+V  ++
Sbjct: 296 STTQIYTHVLGQH 308


>gi|325107529|ref|YP_004268597.1| integrase family protein [Planctomyces brasiliensis DSM 5305]
 gi|324967797|gb|ADY58575.1| integrase family protein [Planctomyces brasiliensis DSM 5305]
          Length = 310

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 62/272 (22%), Positives = 117/272 (43%), Gaps = 29/272 (10%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           K T  +Y  +  +F+ ++          + +R +   +++AF  +     + + SL R+L
Sbjct: 53  KNTQTAYGREIVRFMDWVK---------KPLRTVKLGDVQAFADELSDS-LKESSLHRAL 102

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEKQALTLVDNVLLHTSHETKW 151
           + +KS   +  +    +      M+     + L  R L E   L ++          +  
Sbjct: 103 TAVKSLFAFGFRLGYLSFDVGRAMKLPTFRDELADRILGETDVLRII----------SLE 152

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              RN A+L  LY  G R+SE  SL   +    D    + + GKG K R V +  SV +A
Sbjct: 153 PQPRNRALLLTLYAGGFRVSELCSLKWCHLQERDSAGQITVFGKGGKTRTVLMPQSVWEA 212

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +++  D      + + + P+FR  +   L+     R +++     G+  + + H  RH+ 
Sbjct: 213 VMKLRD------SDSSEAPVFRSRKNGHLDESAVWRIVKKAAERAGIDKNVSCHWFRHAH 266

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           A+H L     +  +Q+ LGH  +STT  Y + 
Sbjct: 267 ASHALDRNCPIHLVQATLGHASISTTGRYLHA 298


>gi|258514706|ref|YP_003190928.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257778411|gb|ACV62305.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 342

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 81/318 (25%), Positives = 138/318 (43%), Gaps = 18/318 (5%)

Query: 20  NWLQ-NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            +L   +  + G S  T++SY      F  ++       IT  T  Q +   I  F+   
Sbjct: 15  EFLDIYMVKQVGRSPDTIESYRDALTIFRRYVLNELNISITKFTFAQCTRNCIFGFLEYL 74

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     +  + L+ +KS+L +   + +T +S  L +  + +   L   + EK  L+  
Sbjct: 75  AAQGNKPGTRNQRLAALKSYLWFAADKDVTLQSIALELSRIPQ---LKNPVTEKFVLSEE 131

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDK 196
               +     +  +  R+  I+ LLY   +R++E L+L   +I    D   +R+ GKG K
Sbjct: 132 ALNAIFIQPASSRMGLRDRTIMILLYDSAVRLAEILNLRVNDICLNQDNPYIRVMGKGSK 191

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI---RGKPLNPGVFQRYIRQLRRY 253
            R+V +     K + +Y D+     N +  L LF  +   R   ++ G  +R+I+Q    
Sbjct: 192 ERVVAINIKTVKHVNQYLDVYRSRDNPDSNL-LFYTVIKGRAGKMSEGNVERFIQQYADK 250

Query: 254 L-----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                  +PL    H LR + AT+L  NG +L  I  ILGH  L TT++Y    +K    
Sbjct: 251 ARESCPDIPLRVYPHMLRRTRATNLYQNGIELALISRILGHAFLDTTRVY---YAKPSLA 307

Query: 309 WMMEIYDQTHPSITQKDK 326
            M E  D      T+++K
Sbjct: 308 MMREAMDSVEAPQTREEK 325


>gi|291457408|ref|ZP_06596798.1| integrase/recombinase, phage integrase family [Bifidobacterium
           breve DSM 20213]
 gi|322691668|ref|YP_004221238.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|291381243|gb|EFE88761.1| integrase/recombinase, phage integrase family [Bifidobacterium
           breve DSM 20213]
 gi|320456524|dbj|BAJ67146.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 319

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/296 (21%), Positives = 120/296 (40%), Gaps = 31/296 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK--- 77
           +L   E+E G S  T+  YE   +     LA         +   +++  ++R ++++   
Sbjct: 48  FLTAKEVE-GCSPKTIAYYESTLQHMTQALA---------KPCTRINSDDLREYLNRYEN 97

Query: 78  -RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            R   K+   +++R +S   SF  +L+      +S +  +  +K +      L+++   T
Sbjct: 98  ERHAGKVTIDNIRRIMS---SFFAWLEDEDYIVKSPVRRIHRVKTAVMAKEVLSDENLET 154

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L D               R+ AI+ +L   G+R+ E + L   ++   +    + GKG+K
Sbjct: 155 LRDRC----------GTLRDLAIVDILASTGMRVGELVGLNIADVNLQERECLVTGKGNK 204

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R V      +  +  Y        + N  L +     G  ++ G  +  +RQL +  G+
Sbjct: 205 QRPVYFDARTKLHLTAYLQSRN---DSNPALFVALNGDGDRISIGGIESRLRQLGKDAGI 261

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                 H  R + ATH +  G  +  +Q +LGH R+ TT  Y  VN  N       
Sbjct: 262 HR-VHPHKFRRTLATHAIDKGMPIEQVQKLLGHARIDTTMHYVMVNQNNVKASHRR 316


>gi|77918979|ref|YP_356794.1| site-specific recombinase XerD [Pelobacter carbinolicus DSM 2380]
 gi|77545062|gb|ABA88624.1| site-specific recombinase XerD [Pelobacter carbinolicus DSM 2380]
          Length = 333

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 68/331 (20%), Positives = 129/331 (38%), Gaps = 63/331 (19%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L+ + +  L+        +  T Q+Y     +F+ F              + +   EI 
Sbjct: 14  KLMDQVREVLRY----HHYAYRTEQNYCQWIVRFIRFFDAKI-------HPKDMGKGEIE 62

Query: 73  AFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           +F+S   T+  +   + +++L+ I    K +  +       IL     K+    P  L++
Sbjct: 63  SFLSHLATEGNVSAATQRQALNAIIFLYKRVLDQ---PVDEILEHIRAKRKRRPPIVLSQ 119

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            +   +++ +              +  +  LLYG GLR+ E + L  Q +  +++ + ++
Sbjct: 120 GEVQKVLNQM-----------TGTHLLMTQLLYGGGLRLMECIRLRIQGLDFERNLIYLR 168

Query: 192 -GKGDKIRIVPLLPSVRKAIL------------------------------------EYY 214
            GKG K R      S+++A+                                     E+ 
Sbjct: 169 DGKGGKDRTTIFPASMKRALQKHVEKVKQLHEQDLADGYGTVFLPHALAKKYPKAPQEFG 228

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
               F        P    IR   +     Q+ ++      G+      HT RHSFATHLL
Sbjct: 229 WQYLFPARGRSTDPRSGKIRRHHVLESGLQKAVKVAVNRAGIHKRVGCHTFRHSFATHLL 288

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            NG ++R +Q ++GH  + TT+IYT+V +K+
Sbjct: 289 ENGVNIRVVQELMGHADVKTTEIYTHVMAKD 319


>gi|75761085|ref|ZP_00741082.1| Integrase/recombinase (XerC/CodV family) [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228902689|ref|ZP_04066836.1| Integrase/recombinase (XerC/CodV family) [Bacillus thuringiensis
           IBL 4222]
 gi|74491427|gb|EAO54646.1| Integrase/recombinase (XerC/CodV family) [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228856876|gb|EEN01389.1| Integrase/recombinase (XerC/CodV family) [Bacillus thuringiensis
           IBL 4222]
          Length = 323

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 70/334 (20%), Positives = 137/334 (41%), Gaps = 46/334 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +N+L + +  + LS+ T++SY+   + F  +L    E ++ I  + ++    IR +I  
Sbjct: 8   VENFLLHCDA-KHLSRKTIRSYDQTLKLFTSYL----ERELKITDVDKVKPLHIRTYIKY 62

Query: 78  RRTQK-------------------------IGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
            R +                          I + ++   L  IK F  +L+  +   ++ 
Sbjct: 63  LRERGKYTFTSNTASEQINYPTRRTDYGKTISETTIANYLRNIKVFFNFLEAEEDIAKNP 122

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           I N+ ++K        L+  +   ++ ++ + T H       R+  ++ L+   G+R  E
Sbjct: 123 ISNIESIKPQRKQKILLSVDEIKKVLYSIDISTFH-----GFRSYVMIKLILDTGIRAGE 177

Query: 173 ALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
             S+  +++     ++ I   K  K R V     +   +  +        +      LF 
Sbjct: 178 CCSMQAEDLDIKNKSILITNPKNKKQRYVYFSNIMANDLKRWLKYRDRFSDAE---YLFP 234

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
            IRG  LN   F+  IR + + +G+    T H LR++FA + + NGGD  S+  +LGH  
Sbjct: 235 TIRGTMLNVNNFEASIRSIGKKVGV--HFTPHQLRNNFAKYYILNGGDWFSLSRVLGHSS 292

Query: 292 LSTTQI-YTNVNSKNGGDWMMEIYDQTHPSITQK 324
           +  TQ  Y +       D +   Y +  P  + K
Sbjct: 293 VEVTQRAYLDFTD----DEIKNKYQRHSPLASMK 322


>gi|294500323|ref|YP_003564023.1| putative tyrosine recombinase XerC-like protein [Bacillus
           megaterium QM B1551]
 gi|294350260|gb|ADE70589.1| probable tyrosine recombinase XerC-like protein [Bacillus
           megaterium QM B1551]
          Length = 283

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 69/317 (21%), Positives = 138/317 (43%), Gaps = 38/317 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+ N+L  I    L+ +   WL    IE G S  T+++Y     QF  +L          
Sbjct: 1   MKKNSLEVIP---LIDDFSQWL----IESGKSDNTIKTYRAVLNQFHEWLLSEG------ 47

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           + + Q++   ++ ++    +      +++++   I  F ++L+K +I    NI   R  K
Sbjct: 48  RHLDQVTKNNVQTYMINLESNNKSASTIEKAFVTISVFARFLEKPEIVQ--NIERKRKEK 105

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
            +  +P++L   +   L+  V           + R+ AI+Y L   G+R+SE  +L  ++
Sbjct: 106 NNEVVPQSLEASELDRLLSEVKQQG-------NLRDIAIVYTLLHTGVRVSEICALNHKD 158

Query: 181 --IMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
             I      L I+  KG K R VPL    R ++ +Y      D   +    LF     + 
Sbjct: 159 VEINKSDGFLIIRNAKGCKKRFVPLSTEARNSLKKYI-----DSLDSNHEALFVSNFDRR 213

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           ++P   Q  +++         +   H LRH+F   L+  G D+ ++  + GH  ++ T+ 
Sbjct: 214 MSPRTVQYMLKKY--------NVNPHKLRHTFCHELVKKGIDIATVAELAGHSDVNVTKR 265

Query: 298 YTNVNSKNGGDWMMEIY 314
           Y   ++++  + + + +
Sbjct: 266 YLKSSTRDLENAITQTF 282


>gi|254436771|ref|ZP_05050265.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198252217|gb|EDY76531.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 290

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 122/293 (41%), Gaps = 30/293 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           R+  ++++ I  G+     +++    + F  FL          ++    +  ++RA+   
Sbjct: 5   RERMIEDMRIH-GMGDKAQKAHIRAVKHFAGFLK---------RSPDTATPDDLRAYQLH 54

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
               ++   +    +  ++        RK         M+   +   LP  L+ ++   +
Sbjct: 55  MTDTEVTPPTFNARIMALRFLFGTTCDRKGMK----RYMQFCTQPRRLPTVLSIEEVAEV 110

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
           +                +  A L + YG GLR SE  SL   +I  D+  + + +GKG K
Sbjct: 111 IAA--------APGPGLKYRAALSISYGAGLRASEVCSLKVSDIDSDRMLIHVDEGKGGK 162

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLG 255
            R V L P +   + +Y+              LF G  +  P++     R     +  +G
Sbjct: 163 DRKVMLSPDLLDLLRDYWREA------QPAGWLFPGKPKINPISARQLSRAFNSAKHVVG 216

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +    T HTLRHSFATHLL    D+R IQ +LGH +LSTT  YT+V +K   D
Sbjct: 217 ISKPATLHTLRHSFATHLLEANIDVRVIQVLLGHAKLSTTARYTHVATKIIRD 269


>gi|66044755|ref|YP_234596.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
 gi|63255462|gb|AAY36558.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 319

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 63/277 (22%), Positives = 118/277 (42%), Gaps = 24/277 (8%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T ++Y+ D + F  F+     E+      R ++   + A+ ++   + +   +++R L
Sbjct: 39  PRTRRAYQIDLQDFCSFVGLAGAEE-----FRAVTRAHVLAWRARLEKRGLAGATIRRKL 93

Query: 93  SGIKSFLKYLKKRKITTE-SNILNMRNLKKSN---SLPRALNEKQALTLVDNVLLHTSHE 148
           + + S   +L +       + +  ++  +  +     P AL + QA  L+D         
Sbjct: 94  AALASLFDHLLENNAVAGGNPVHGVKRPRIESNEGKTP-ALADHQAKALLD-----APPA 147

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSV 206
                 R+ A+L +L   GLR  E   L   ++ + +    LR+ GKG K+R +PL P  
Sbjct: 148 DSLKGLRDRAVLAVLLYHGLRREEGAQLKTSDLQERRGIKHLRVNGKGGKLRWLPLHPVA 207

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKP----LNPGVFQRYIRQLRRYLGLP-LSTT 261
            + I  Y +        N    LFR +RG+     L+     + +       G+      
Sbjct: 208 AERIYAYMEKDLERGAGNGS--LFRSLRGRASGTGLSADGIYKIVCHWAMSAGIKVDGLG 265

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            H LR + AT+ L +  D+  +Q  LGH  +STT++Y
Sbjct: 266 VHGLRATAATNALEHDADIAKVQIWLGHANISTTRLY 302


>gi|114566275|ref|YP_753429.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337210|gb|ABI68058.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 337

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 68/312 (21%), Positives = 126/312 (40%), Gaps = 27/312 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L  +RG    T+ SY    +   +FL     +K++   +  +S T +  F+    T
Sbjct: 14  FLSYLISQRGYGNNTVASYRDTFKLLFMFLES-DGKKLSKLKLTDISQTCVLQFLEWAET 72

Query: 81  QKI-GDRSLKRSLSGIKSFLKYLKKR-----KITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++     +    L+ +KSF  Y+           T+  I+N+   +     P  L E + 
Sbjct: 73  ERHNSVSTRNLRLTVLKSFFGYVLSTSPEFSGQCTD--IINIPAKRVEKKPPLYLTESET 130

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-LRIQGK 193
             L+     +          R+ AIL LLY    R+ E ++L   ++   +   + ++GK
Sbjct: 131 KLLL-----NAPDRNSREGIRHMAILTLLYDSACRVQELINLNVADVTIGRCCKVFVKGK 185

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR- 252
           G K R +P+     K +  Y +       L     LF    G  L        + + ++ 
Sbjct: 186 GSKYREIPIFGETGKILERYINAY----GLKPGEVLFTNRSGGRLTRAGVSYIMNKYKKI 241

Query: 253 -------YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
                       LS + H +RHS ATHL++   ++ +++  LGH  + TTQ+Y   N + 
Sbjct: 242 LQERYANRFNSNLSLSPHLMRHSKATHLVNENVNIYNVRDFLGHTSVITTQVYLTSNPEV 301

Query: 306 GGDWMMEIYDQT 317
               + +   +T
Sbjct: 302 TRKAIEKASSKT 313


>gi|315182768|gb|ADT89681.1| site-specific recombinase IntIA [Vibrio furnissii NCTC 11218]
          Length = 329

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 77/315 (24%), Positives = 121/315 (38%), Gaps = 61/315 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRS 87
           R  ++ T++SY     Q++ F       K+  +        ++ AF+S    ++++   +
Sbjct: 16  RHYARKTIESYLYWVVQYIRFHGNQHPNKLGNR--------DVEAFLSDLVVSKQVAAST 67

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
              +L+ +    K   K+ +  +   L  R+ KK   LP  L   +   L   +   T  
Sbjct: 68  QNLALNALVFLYKEFLKKPLDID---LRFRHSKKQRKLPVVLTPTEIKKLFAAIPAQTLL 124

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
                         L+YG GLR+ E + L  ++I  D   +R+ Q KG K RIV L   +
Sbjct: 125 PY-----------QLVYGSGLRLMETIRLRVKDIDFDYGAIRVWQSKGGKSRIVTLAKEL 173

Query: 207 R-----------------------------KAILEYYDLCPFDLNLNIQLPLF------- 230
                                           I E Y      L      P         
Sbjct: 174 HPLLRFQIETVKHLYTQDQLNPNYDGVQMPNRIAEKYPSASKSLEWQFLFPAKQLCRYGD 233

Query: 231 -RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
             G     L+    Q+ I + R    +    + HTLRHSFATHLL  G D+R++Q  LGH
Sbjct: 234 EPGWYRHHLHETTLQKTIIKARFTAEIAKPLSCHTLRHSFATHLLEAGADIRTVQEQLGH 293

Query: 290 FRLSTTQIYTNVNSK 304
             + TTQIYT+V  +
Sbjct: 294 SDVKTTQIYTHVIER 308


>gi|218902477|ref|YP_002450311.1| integrase/recombinase [Bacillus cereus AH820]
 gi|218540144|gb|ACK92542.1| integrase/recombinase [Bacillus cereus AH820]
          Length = 306

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 60/309 (19%), Positives = 134/309 (43%), Gaps = 19/309 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +KE Q   +       LS  T++ Y     +F  F +     ++ I  +R +    ++++
Sbjct: 7   MKEFQEEKEY----NNLSHRTIEVYMATLNEFRNFCS-----ELEIVDLRDIREVTVKSY 57

Query: 75  ISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT--ESNILNMRNLKKSNSLPRALNE 131
           +   ++T+  G  +    L  ++ F  Y +  ++    ++ +  ++  K+   +     +
Sbjct: 58  LRYCKKTRGNGVVTCNSKLHHLRIFFNYWQNEEVMEHKDNPVRKLKPAKEDTKI-EVFTD 116

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
                ++       + +  +   R+ AI+ LL   G+R+ E +++  ++I     ++ + 
Sbjct: 117 YHIQQMLRYYRRLKTRDKSFFGYRDHAIIVLLLSTGIRLGELVNIQWKDIDLVNRSVVLF 176

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GK  K + +P+   + K I E+      +L    Q  LF    GK L+P   +   ++L 
Sbjct: 177 GKARKQQSIPITDKLTKEICEWRIFVEKELGSIPQ-YLFTSREGKQLSPNAVKLIFQRLS 235

Query: 252 RYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           + +       + HT RHSFA   +  G D+ ++Q +L H  L  T+ Y ++     G  +
Sbjct: 236 KVMNFKDVRLSCHTFRHSFAHRCIMQGMDVFTLQKLLRHSNLRMTERYLSL----WGTAL 291

Query: 311 MEIYDQTHP 319
            E  ++ +P
Sbjct: 292 REQNEKFNP 300


>gi|239623915|ref|ZP_04666946.1| integrase family protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521946|gb|EEQ61812.1| integrase family protein [Clostridiales bacterium 1_7_47FAA]
          Length = 350

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/310 (21%), Positives = 121/310 (39%), Gaps = 23/310 (7%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTE-------EKITIQTIRQLSYTEIRAFISKRR 79
           IE   S  T  +Y  D   F  FL              IT++ + QLS T+   ++   +
Sbjct: 36  IEPRTSSRTRIAYAYDLHVFFDFLHRENPVLSKLEIRDITLEHLDQLSVTDFEEYMEYLK 95

Query: 80  TQ--------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
            +           +R + R +S +KSF  Y  + +    +    ++  K        L+ 
Sbjct: 96  YRFNDKKQEVMNKERGIMRKISSLKSFYNYFYRNERIKNNPAALVQLPKLHEKEIIRLDI 155

Query: 132 KQALTLVDNVLLHTSHETKWIDAR------NSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
            +   L+D V        K           + A+L LL G G+R+SE + L   +I    
Sbjct: 156 DEVALLLDEVEQGEKLTDKQKSYHQKTKVRDLALLTLLLGTGIRVSECVGLNIADIDFKN 215

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQ 244
             +RI  KG K   V     V  A+L+Y +     +     +  LF  ++ + +     +
Sbjct: 216 GGIRIYRKGGKEVTVYFGTEVEDALLDYLEERDRIIPEKGHEDALFLSLQRRRMAVRSVE 275

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI-YTNVNS 303
             +++  R +      T H LR ++ T+L    GD+  +  +LGH  ++TT+  Y  +  
Sbjct: 276 NLVKKYARIVSPLKPITPHKLRSTYGTNLYRETGDIYLVADVLGHSDVNTTKRHYAALED 335

Query: 304 KNGGDWMMEI 313
           +       ++
Sbjct: 336 ERRRSARNKV 345


>gi|114566841|ref|YP_753995.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337776|gb|ABI68624.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 306

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/307 (20%), Positives = 137/307 (44%), Gaps = 16/307 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             + + ++ E  R +SK TL +Y    ++F  +          I  +  ++   I++++ 
Sbjct: 6   AIKEFQEDREF-RQISKATLTNYMGCLKEFHTYCLEKE-----IIEVTDITSNTIKSYLI 59

Query: 77  K-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQ 133
             ++ +     ++   L  IK F  YL++ +I  E  + I  +  +K +  +    ++KQ
Sbjct: 60  YCQKERGNNPTTINSKLRSIKIFFNYLQEIEIFNEKNNPIHKVNYIKANVKI-EVFSDKQ 118

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++       + +      R+S I+  L G G+R+ E  +L   ++  +   + + GK
Sbjct: 119 INEMLSYYRRIKTRDKSLYAYRDSTIIITLLGTGMRLGELCNLKWSDVDFENQHIILFGK 178

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
                 +P+   ++  + EY   C       + + +F    GKPL+P   +   ++L++ 
Sbjct: 179 LQTQTSIPMADKLKSELQEYKLFCQKQFG-KLPMFVFVDRTGKPLSPNAVKNMFKRLKQI 237

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           +  P +   A+  RH+FA   L NGGD+ ++Q +L H   + T+ Y  +     G  + E
Sbjct: 238 MNFPNVRCCAYDFRHTFAHRFLMNGGDVFTLQKLLRHSSPAMTERYLAI----WGTALQE 293

Query: 313 IYDQTHP 319
             +Q +P
Sbjct: 294 RANQFNP 300


>gi|258651475|ref|YP_003200631.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258652720|ref|YP_003201876.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258653844|ref|YP_003203000.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258554700|gb|ACV77642.1| integrase family protein [Nakamurella multipartita DSM 44233]
 gi|258555945|gb|ACV78887.1| integrase family protein [Nakamurella multipartita DSM 44233]
 gi|258557069|gb|ACV80011.1| integrase family protein [Nakamurella multipartita DSM 44233]
          Length = 334

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 67/327 (20%), Positives = 127/327 (38%), Gaps = 53/327 (16%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L+ +         TL +   D + F   +     E         ++  ++  FI +
Sbjct: 22  LDEYLRFVAA--RCRPNTLLAQMFDLKVFFTVVGRPPVE---------VTTADVLRFIER 70

Query: 78  RR-------------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI----------- 113
           +R                +   ++KR L+ +    +YL  R +   + +           
Sbjct: 71  QRAARNGNVVRLADGESGLALTTIKRRLATVSGLFEYLAIRGLVARNPVPRSLSARPGRA 130

Query: 114 --LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
                  ++    LPR L+  +   L+          +    AR+ A+++L+   GLR  
Sbjct: 131 PVRGAPLIRAPRRLPRILSPAEVNALI----------SALRTARDRAMVWLMLLGGLRRC 180

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           E L L  +++   +  + + GKG   R+VP+       +  YY     D + +    + +
Sbjct: 181 EVLGLRHRDVQPGERRVFVTGKGGHERVVPVGKVFFAELAGYYATERPDTDTDQVFVVLK 240

Query: 232 GIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
           G R  +PL+       +   RR  GL    T H LRH+  T L  +G  L +IQ+  GH 
Sbjct: 241 GQRRGQPLSAAGVDEVLSGARRRAGLA-HATCHELRHTCFTRLRESGMALEAIQAQAGHV 299

Query: 291 RLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + TT+IY ++      DW+++ Y + 
Sbjct: 300 SIETTKIYLHL----APDWLVDEYRKA 322


>gi|317128823|ref|YP_004095105.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
 gi|315473771|gb|ADU30374.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
          Length = 280

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 59/302 (19%), Positives = 131/302 (43%), Gaps = 24/302 (7%)

Query: 15  LKERQNWLQNLEIE--RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +K  + WL   + +     SK TL+SY  +    + FL     E +TI          ++
Sbjct: 1   MKLSELWLHYEQDKTLENYSKKTLKSYRLELGLLIRFLGDMEAEDVTIF--------HLK 52

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            ++ +   +++   S +     I+SF ++  +  + +++  + ++  K    +P+ +NE+
Sbjct: 53  NYLIE-EQKRLKPSSFQHRCKFIRSFFRWAHEYDLLSKNPAIKVKMPKDHYRIPKPVNEE 111

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
                    LL  + ++         ++  +Y  G+R+ E  +L  ++      ++ + G
Sbjct: 112 TLE------LLRIASKSPLEG----LLVEFMYSAGVRVGEVYNLNKKDFNFTNRSVYVFG 161

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KGDK R V         I  Y+D    +          +    + ++    + + ++L R
Sbjct: 162 KGDKEREVYFSKRAEIWIQRYFDSRQDE---EECFICSKNKPYRRMSIDQIRWHFKKLAR 218

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +  +   H LRHS+A+HL++ G  L  ++ +LGH R  TT++YT ++     +   +
Sbjct: 219 KAEVDENVYPHRLRHSYASHLINRGASLEMVRDMLGHKRTETTRVYTLLHGDKRREEYRK 278

Query: 313 IY 314
            +
Sbjct: 279 YF 280


>gi|332971270|gb|EGK10233.1| TnP I resolvase [Desmospora sp. 8437]
          Length = 287

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 61/303 (20%), Positives = 123/303 (40%), Gaps = 20/303 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           + + + W++      G S  T++SY    R +  +              R+L    I  +
Sbjct: 1   MDDFRRWMEM----NGYSANTIESYIRGVRSYFDWFNGKYGR-----DPRELFRENIVDY 51

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRALNEK 132
           +   + +++G  +    L+ ++    +  +  + +++ IL     K    N  P     +
Sbjct: 52  LQDLKVREVGHVTYNSHLAALQRLNAFWIESGVQSDTVILKRDRWKAQAGNESPTQHTTE 111

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ- 191
           +    +  +L   +         +  + + L   GLR+SEA+ L  +++      L +Q 
Sbjct: 112 EVERFLQVILESGNRR-------DYTLAFFLAYTGLRVSEAIHLQIKDVNLPARQLVVQF 164

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQL 250
           GKG K R +PL   + + I  Y            + P LF   RG+ ++       + + 
Sbjct: 165 GKGQKRREIPLSTRLVQVIRSYLRDTRPQYRTAERSPYLFVSSRGRQISRKTVYSLLVKY 224

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            R  G+    T H+LRH F T  L  G  +  ++ I GH  ++TT IY + + K+  + +
Sbjct: 225 SRQAGVNPEITPHSLRHFFCTRALEAGYTIEEVRQIAGHANVNTTLIYAHPSRKSMLEKI 284

Query: 311 MEI 313
             +
Sbjct: 285 DRL 287


>gi|91224344|ref|ZP_01259606.1| site-specific recombinase IntIA [Vibrio alginolyticus 12G01]
 gi|91190686|gb|EAS76953.1| site-specific recombinase IntIA [Vibrio alginolyticus 12G01]
          Length = 308

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 80/319 (25%), Positives = 130/319 (40%), Gaps = 64/319 (20%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           R  +  T++SY    ++F+ F          +     L+  ++  F+S     +K+  ++
Sbjct: 4   RHYANKTIESYLFWIKRFITFHQ--------LAHPSTLAEDDVIQFLSYLAVEEKVAVKT 55

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
              +L+ I    +   K  ++ +   +  +       LP  L  ++    V +       
Sbjct: 56  QALALNSISFLYRDYFKTPLSLD---MRFQKSLTEKKLPVVLTREEIRRFVQH------- 105

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
               ID R    + LLYG GLR+ E L L  Q+I  D   +R+ QGKG K R V L   +
Sbjct: 106 ----IDPRYRLHIQLLYGSGLRVMECLRLRVQDIDYDYGAVRVWQGKGGKNRTVTLAKEL 161

Query: 207 RKAILEYYDLCPFDLNLNIQLP--------------------------LFRG-------- 232
            + +    +L       +  +P                          LF          
Sbjct: 162 HEPLKAQVNLARNYYFKDRHMPGYAGVYISEGLRRKYPKAELDFNWHFLFPSTKLSADRD 221

Query: 233 ---IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
              +R   +N    QR +++      +  + T HTLRHSFATHLL +G D+R++Q  LGH
Sbjct: 222 TGELRRHHINESAIQRAVKRAASDASIEKTVTCHTLRHSFATHLLESGADIRTVQEQLGH 281

Query: 290 FRLSTTQIYT---NVNSKN 305
             + TTQIYT   +VN KN
Sbjct: 282 TDVKTTQIYTAAHHVNHKN 300


>gi|229144736|ref|ZP_04273135.1| Integrase/recombinase [Bacillus cereus BDRD-ST24]
 gi|228638697|gb|EEK95128.1| Integrase/recombinase [Bacillus cereus BDRD-ST24]
          Length = 305

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 67/305 (21%), Positives = 135/305 (44%), Gaps = 16/305 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L++ E+  GL+  T+QSY     +F  +L    E    I  I  ++   I+ ++  
Sbjct: 8   IKDYLEDKELS-GLAPRTIQSYGDTLNEFSRWLVAEKE----IINIEDITPQVIKGYLLY 62

Query: 78  R-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITT--ESNILNMRNLKKSNSLPRALNEKQA 134
             + +     +    L  +K+F +YL+   I     +    ++  K   ++ +  +++Q 
Sbjct: 63  CSKERGNTVVTRNGKLQHLKTFFRYLEDEDIIEIRSNPTNKIKPAKTDKAI-KVYSDEQI 121

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             ++       S E      R   I+  L G G+R+ E +S+   ++     T+ I GK 
Sbjct: 122 KQMLRYYRRMRSRENTLYSYRGHTIIVALAGTGIRLGELVSMRWDSVDLLNKTITIFGKN 181

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K    PL   V + + E+   C     + +   +F   RG PL     +    +L   +
Sbjct: 182 RKSLSTPLTDKVARELYEWRLFC-EKYYIKLPAHVFNDHRGNPLTVNAVKLMFTRLSLRM 240

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G    TTAH  RH++A++ L  G D+ ++  ++ H ++ TT++Y +      G+ + E  
Sbjct: 241 G--FKTTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHA----FGNSLAESN 294

Query: 315 DQTHP 319
           D+ +P
Sbjct: 295 DKYNP 299


>gi|254499439|ref|ZP_05112100.1| putative phage integrase family protein [Legionella drancourtii
           LLAP12]
 gi|254351338|gb|EET10212.1| putative phage integrase family protein [Legionella drancourtii
           LLAP12]
          Length = 326

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 129/288 (44%), Gaps = 15/288 (5%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           LS+ ++ SY      F  +   + ++++ +  I        R ++SK   +K    ++  
Sbjct: 40  LSESSISSYIQGINVFTTWALDFYQQEVCLLEITANDLRAYREYVSKILRRK--PSTINH 97

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQALTLVDNVLLHTSHET 149
            +  +K F  +  K  +  ++    +  +K++ +  P ALN+ +   L+    L T    
Sbjct: 98  HIQVLKRFYAWAAKTNLIPDNPASAIHFVKRATTTKPNALNKDEIHALLRASGLST---- 153

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSV 206
             +  RN AI+ LL   GLR+ E  +L  ++++  + +  +    GKG K R +PL    
Sbjct: 154 HGLALRNYAIVQLLLQSGLRVGELNNLLMKDVVIRERSGCVNVVDGKGRKHREIPLNSIA 213

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-STTAHTL 265
           R+A+  Y +      +L     LF   RG+       Q  I  L +   +   + TAHTL
Sbjct: 214 RRALTRYLETRD---SLGSDDILFTTKRGEQGTIRALQALISSLAKRANITRINVTAHTL 270

Query: 266 RHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           RH+FAT  L    G L  +  ++GH  ++TT IYT  + +   + M  
Sbjct: 271 RHTFATQFLQANPGCLVELAMLMGHESVNTTAIYTKASKEKLAEHMER 318


>gi|153822305|ref|ZP_01974972.1| site-specific tyrosine recombinase [Vibrio cholerae B33]
 gi|229508697|ref|ZP_04398190.1| integron integrase [Vibrio cholerae B33]
 gi|229608748|ref|YP_002879396.1| integron integrase [Vibrio cholerae MJ-1236]
 gi|255743891|ref|ZP_05417847.1| integron integrase [Vibrio cholera CIRS 101]
 gi|126520201|gb|EAZ77424.1| site-specific tyrosine recombinase [Vibrio cholerae B33]
 gi|229354221|gb|EEO19151.1| integron integrase [Vibrio cholerae B33]
 gi|229371403|gb|ACQ61826.1| integron integrase [Vibrio cholerae MJ-1236]
 gi|255738522|gb|EET93911.1| integron integrase [Vibrio cholera CIRS 101]
          Length = 319

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 71/334 (21%), Positives = 138/334 (41%), Gaps = 63/334 (18%)

Query: 18  RQNWLQNLE---IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           R  +L+++      +  S  T ++Y    ++F++F      + +  Q        E+  F
Sbjct: 3   RSPFLESIRQVMRTKHYSIQTEKTYLLWIKRFILFNKKQHPKNMGEQ--------EVTNF 54

Query: 75  ISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++     +++   +   +L  I    K++ +R++T   + +  R  K    +P  L+  +
Sbjct: 55  LTYLAVNRQVTASTQNLALCAIVFMYKHILQRELTLLPDTIKARAPK---RVPSVLSHNE 111

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QG 192
           A+++++            +      +  LLYGCGLR +E L L  ++I  +   + + +G
Sbjct: 112 AMSIINQ-----------LSGSYKLMFSLLYGCGLRKAELLMLRVKDIDFESRNVYVFRG 160

Query: 193 KGDKIRIVPLLPSVRK------------------------------------AILEYYDL 216
           KG K R+  L   + +                                    AI ++   
Sbjct: 161 KGGKDRVKMLPEKLVEPLKLHIEKVRDLHEKDLCEGEGKTSLPSGLARKYPYAISDFKWQ 220

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
             F  ++  + P+   +    L+     + +R      G+    TAH  RHSFAT LL  
Sbjct: 221 FIFPSSVRCKHPVDGYVCRHHLHWTSLTKKLRSAVIRSGVQKHVTAHIFRHSFATQLLKA 280

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           G D+R++Q +LGH  L TTQIYT+V  ++    +
Sbjct: 281 GTDIRTVQELLGHSDLKTTQIYTHVIGQHSSGTI 314


>gi|254785433|ref|YP_003072862.1| integron integrase [Teredinibacter turnerae T7901]
 gi|237684485|gb|ACR11749.1| integron integrase [Teredinibacter turnerae T7901]
          Length = 322

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 76/329 (23%), Positives = 132/329 (40%), Gaps = 65/329 (19%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
            LK  ++++     +R  +K T+ SY    R+F+++       ++  +        E+  
Sbjct: 6   FLKSIKDYM----FQRRYAKRTIDSYLVWIRRFIVYSNKRHPAEMGDR--------EVEL 53

Query: 74  FISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           F+S     + +  ++   +L+ +    + +  R ++     ++    +K   LP  L   
Sbjct: 54  FLSYLVLERNVAAQTQALALNALSFLYRDIVNRPLSQTLRFVHSHAPRK---LPVVLTPD 110

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-Q 191
           +   L++            I         LLYG GLR+ E++ L   +I  +   +RI  
Sbjct: 111 EVRRLLE-----------RISPVYFLPAALLYGSGLRLMESVRLRVHDIDFEYCCIRIWN 159

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----------------------- 228
           GKG K R V + P +   +     +    L L+I  P                       
Sbjct: 160 GKGGKHRTVTVAPELLAPLRVQTSVVERYLALDINNPKYGGVWLPSALRRKYTSASKELE 219

Query: 229 ---LFRGIR-----------GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
              LF   R              +     Q+ +R+      +  + +AHTLRHSFATHLL
Sbjct: 220 WHYLFPSSRLSIDPETGHLASHHICETGLQKAVRKAAGVAAISKTVSAHTLRHSFATHLL 279

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            +G D+R++Q  LGH  L TTQIYT+V  
Sbjct: 280 QSGTDIRTVQEQLGHADLRTTQIYTHVLQ 308


>gi|312131663|ref|YP_003999003.1| integrase family protein [Leadbetterella byssophila DSM 17132]
 gi|311908209|gb|ADQ18650.1| integrase family protein [Leadbetterella byssophila DSM 17132]
          Length = 275

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 140/289 (48%), Gaps = 33/289 (11%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +LKE +  L    IE+  +  T+++Y   ++ +L  +  Y       ++++ +  +EI +
Sbjct: 6   ILKEFEKQL----IEQRYAPNTIRAYLDYSKLYLQHVQPY-------ESLQDVPLSEIES 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+ K+++ +I     K  +  IK     + K+K+     +  +   +K  SLP+  ++++
Sbjct: 55  FV-KQKSDQISISYQKGLVGAIKKIHDLVGKQKL----ELKFLYPKRKFESLPKYFSKEE 109

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-G 192
              + D             + ++ AIL ++Y CGLR+S+ ++L   +I      L I+  
Sbjct: 110 IKRIFDAT----------PNVKHKAILMIIYSCGLRVSDLINLKMSDIKTHDKLLSIRST 159

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K  K R V L   + K +  YY+          +  LF    G   +    Q  +++  +
Sbjct: 160 KNSKDRWVTLPDPLIKILRSYYN------EYQPKNYLFENPDGGQYSERSVQLILKRALK 213

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             G+  + T H+LRHSFA HLL +G DL ++QS++GH  + TT+IY  +
Sbjct: 214 NGGIKTAGTVHSLRHSFAIHLLQSGTDLHTVQSLMGHQSIKTTEIYAQM 262


>gi|254427016|ref|ZP_05040723.1| integron integrase subfamily [Alcanivorax sp. DG881]
 gi|196193185|gb|EDX88144.1| integron integrase subfamily [Alcanivorax sp. DG881]
          Length = 328

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 73/332 (21%), Positives = 133/332 (40%), Gaps = 65/332 (19%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
             +L+ + + WL+    +   S  T Q+Y     +++ +          ++    +   E
Sbjct: 12  PVKLMDQFRFWLR----QNQYSYRTEQTYVLWVVRYIRYNQ--------LRHPSTMGAKE 59

Query: 71  IRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           I+AF+S    Q+     + K  L+ +  F +   ++        LN R  K+   +P   
Sbjct: 60  IQAFLSYMSVQRHCSPSTQKIVLNALNCFYRRFLQQDYGE----LNFRQSKRKPRIPAVF 115

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +E++A  ++             +   +  I  LLYG GLR+SEAL +  +++  D+  + 
Sbjct: 116 SEQEAQAVI-----------ALLSEPSQLICELLYGAGLRVSEALRIRIKDLDFDRMIIT 164

Query: 190 I-QGKGDKIRIVPLLPSVRKAIL------------------------------------E 212
           + QGKGDK R   L  S  + +                                     +
Sbjct: 165 VHQGKGDKDRRTLLPKSCEERLRQQIAIASNLYEMDRKNGVGPAWMPHALSRKYSGAGSQ 224

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                 F      + P    IR    +    +++++Q      +      HT RHSFATH
Sbjct: 225 RIWQFIFPSKEPARDPETGIIRRHHYHQDNVRKHVKQAAAEAEITKLCGPHTFRHSFATH 284

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           LL  G D+R++Q +LGH  +STT+ Y +V ++
Sbjct: 285 LLEKGYDIRTVQELLGHSDVSTTERYLHVMNR 316


>gi|116625160|ref|YP_827316.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116228322|gb|ABJ87031.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 301

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 120/291 (41%), Gaps = 28/291 (9%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RT 80
           L+ LE  R  S+ T + Y    ++F              ++  QL    IR +     + 
Sbjct: 16  LEELE-RRNYSQATARPYVGAIQRFAEHFH---------RSPDQLGPEHIREYQLHLVQD 65

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQALTLVD 139
           +K+  R++   +S ++ F + + KR+   +     +   K     +P  L+  +   L+ 
Sbjct: 66  RKLHPRTVMIQMSALRFFFRKVLKRRFDRDD----LPLPKLLRRQIPTVLSRDEVARLI- 120

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR 198
                        + R+  IL  LY  G+R +E   L  ++I  ++  L I+ GKG K R
Sbjct: 121 ---------AAAGNLRHRTILMALYATGMRRAELCHLRIEDIDKERMVLHIRQGKGGKDR 171

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            VPL P +   +  +Y   P      +   L      +P+         RQ     G+  
Sbjct: 172 EVPLPPKLLAQLRIHYRALPHRSAW-VFPSLQSRRPDQPMTEKAVWHACRQAAWRAGITK 230

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           S   HTLRH FATHLL NG +L  IQ +LGH     T IY ++ ++     
Sbjct: 231 SVHPHTLRHCFATHLLDNGAELPVIQVLLGHSDPRDTMIYLHLCTRQLRAA 281


>gi|296161182|ref|ZP_06843991.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295888523|gb|EFG68332.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 316

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 65/275 (23%), Positives = 113/275 (41%), Gaps = 22/275 (8%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T ++Y  D R F+ F A    E       R ++   + A+      + +   +++R L
Sbjct: 38  PRTRRAYRIDLRDFMSFTAITRPE-----DFRIVARAHVLAWRKVLEDRALSGATIRRKL 92

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSN---SLPRALNEKQALTLVDNVLLHTSHET 149
           + + S  +YL ++     + +   +  K  +     P AL + QA  L+D          
Sbjct: 93  AALSSLFEYLCEKNAVDFNPVKGAKRPKVESNEGKTP-ALGDHQARALLD-----APDPA 146

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL--RIQGKGDKIRIVPLLPSVR 207
                R+ A+L +L   GLR  E   L  ++I   +  L  RI GKG+K+R +PL     
Sbjct: 147 TLKGKRDRALLSVLLYHGLRREELCQLKVRDIHARRGVLHLRIHGKGNKLRYLPLHAGSA 206

Query: 208 KAILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNPGVFQRYIRQLRRYLGLPL-STTAH 263
           + I  Y ++           PLF   R      L      + +        + +     H
Sbjct: 207 ERIHAYLEVAGH--GETPHAPLFQPARRKTHAALTADGVYKIVLAYAAGAQIEVQGFGVH 264

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +LR + AT+ L +  D+  +Q  LGH  ++TT+IY
Sbjct: 265 SLRATAATNALEHEADIAKVQEWLGHANIATTRIY 299


>gi|157362896|ref|YP_001469663.1| phage integrase family protein [Thermotoga lettingae TMO]
 gi|157313500|gb|ABV32599.1| phage integrase family protein [Thermotoga lettingae TMO]
          Length = 276

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 138/296 (46%), Gaps = 29/296 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   L  ++ LS +T+++Y    R+F              Q+I +L+  EI  + ++
Sbjct: 8   LKRFEAVLRSQK-LSSMTVRAYMSAVRKF-------------TQSIEELNVEEILKW-AE 52

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     ++      I+ FL+ +    +    N L ++   +S+++P+AL+E++ L L
Sbjct: 53  TTAEGRKPSTVNLYYCAIRRFLEEVSPEILLDLRNKLKVKG--RSSTIPKALSEREFLKL 110

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            +  +     + + +      I+ L    GLR+SE  SL   +I   +  + + GKG K+
Sbjct: 111 WNKAVKIFDEDYRQL-----LIVGLAGYAGLRVSEIRSLKVGHINLREDHILVNGKGRKM 165

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RIVP+   ++  I +          L  + PL + + GKP+        ++ L +  G+ 
Sbjct: 166 RIVPIPSKLKPYIFKIVP------KLKEEEPLLKNLSGKPITSHGISYLLKNLAKKTGI- 218

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              + H LRH+ AT+LL  G +L+ +Q  LGH  L+TT+ Y  V   +  + + + 
Sbjct: 219 KHISPHVLRHTAATNLLKKGVNLKIVQEFLGHSSLATTERYLRVTINDMKENLRKA 274


>gi|315644277|ref|ZP_07897447.1| hypothetical protein PVOR_02010 [Paenibacillus vortex V453]
 gi|315280652|gb|EFU43941.1| hypothetical protein PVOR_02010 [Paenibacillus vortex V453]
          Length = 348

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 58/332 (17%), Positives = 130/332 (39%), Gaps = 33/332 (9%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+E   ++  ++    L + T+  Y  +   F+ ++     E+    TIR+++   +R +
Sbjct: 26  LQEAVEFVVKIKRANNLKERTISGYIQNMNYFIEWIT----ERYGEITIREVTADLLREY 81

Query: 75  ISKRRTQ------------------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           +    T                    +   S+   +   K+F   L + ++   +  +N+
Sbjct: 82  VLWCATDKEYYAGHPFKAEYEKGKLGLSPASVNVRIRVFKTFFAVLHEEEVIDRNPAVNV 141

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             L++       L++++    +      +  + +W   R+  I+ L+   GLR+ E  +L
Sbjct: 142 SLLRQDIDTIMPLSDEELRRFM-----KSPDQRQWAQWRDYVIMTLILDTGLRLGEICAL 196

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
               I   + ++ +    +K R   +LP   +       L            +F    G+
Sbjct: 197 EKMEIDFVKKSITLPASKNKNRKSRMLPLSTETARLLKQLIAETERNFDTTYVFTTNYGE 256

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L+    Q+   +      L  + + H LRH+FAT    NG  +  +Q ++GH  ++TT+
Sbjct: 257 QLSEKTIQKSFDKYAEKAKLGRNVSPHVLRHNFATMAAENGMSVFHLQKLMGHADIATTR 316

Query: 297 IYTNVNSKNGGDWMMEIYDQTHP--SITQKDK 326
            Y  ++       + E + +  P   +T + K
Sbjct: 317 KYVQISE----GSLAEEHKRFSPLTRLTSRKK 344


>gi|148264912|ref|YP_001231618.1| phage integrase family protein [Geobacter uraniireducens Rf4]
 gi|146398412|gb|ABQ27045.1| phage integrase family protein [Geobacter uraniireducens Rf4]
          Length = 279

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 80/292 (27%), Positives = 130/292 (44%), Gaps = 32/292 (10%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +   R+  +++L++  G S  T +SY    R    +          +++   LS  ++R 
Sbjct: 1   MTDLRRRMMEDLQLA-GYSARTQKSYLDAVRGLAKYY---------MRSPDLLSEDDVRG 50

Query: 74  FISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           F     + +K    +    LSGIK F +   +RK +    +  +    KS  LP  L+ K
Sbjct: 51  FFLHLLKVRKAARSTFTIYLSGIKFFFETTLQRKWS----VFGITKPAKSKRLPVVLSRK 106

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ- 191
           +  TL+ ++           + R    L ++Y CGLR+SE   L  ++I   +  L ++ 
Sbjct: 107 EVRTLLKSIK----------NPRVKMALTIIYACGLRLSEGARLKVKDIDSGRKLLWVRD 156

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG K R VPL     + +  +Y      L       LF       +N    Q   R   
Sbjct: 157 GKGMKDRCVPLPKRPLELLQTHY-----RLFGAGSEYLFPS-GDGHINICTIQTAFRVAV 210

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           R   +  + T HTLRHS+ATHLL NG D  +++ ILGH  ++TT IY ++  
Sbjct: 211 RKSDIGKTATVHTLRHSYATHLLENGEDSATLKEILGHSSITTTNIYLHMTE 262


>gi|289668108|ref|ZP_06489183.1| putative integrase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 285

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 64/275 (23%), Positives = 116/275 (42%), Gaps = 52/275 (18%)

Query: 65  QLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           Q+   E+ AF+++  T+  +   +  ++L+ +    + +   ++     + N+   K+  
Sbjct: 3   QMGQIEVEAFLTELATRGQVSAGTQNQALAALLFLYREVLGVEL---PWMENLVRAKRPR 59

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            +P  L+  +   L+             ++     +  LLYG G+R+ E L L  +++  
Sbjct: 60  RIPVVLSADEVARLL-----------TMLEGSCRLMAGLLYGSGMRLLECLRLRTKDVDV 108

Query: 184 DQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY---------------------------- 214
            +  + ++ GKG K R VPL   +R  +++                              
Sbjct: 109 VRGEIVVRDGKGGKDRQVPLPHILRGKLMQQRERALLLHDADLAEGAGRVFLPHALARKY 168

Query: 215 --------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
                       F        P    +    L+  V QR ++  RR  G+    T HTLR
Sbjct: 169 PNVDVEPGWQYLFLAARRSVDPRSGRVGRHHLSEEVLQRAVQVARRQAGITKPATCHTLR 228

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H+FATHLL  G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 229 HAFATHLLEAGHDIRTVQELLGHKDVTTTQIYTHV 263


>gi|15900773|ref|NP_345377.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae TIGR4]
 gi|111656825|ref|ZP_01407676.1| hypothetical protein SpneT_02001908 [Streptococcus pneumoniae
           TIGR4]
 gi|148988317|ref|ZP_01819764.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP6-BS73]
 gi|148993703|ref|ZP_01823150.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP9-BS68]
 gi|149002427|ref|ZP_01827361.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP14-BS69]
 gi|168490325|ref|ZP_02714524.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae SP195]
 gi|182683810|ref|YP_001835557.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae CGSP14]
 gi|225858687|ref|YP_002740197.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae 70585]
 gi|225861217|ref|YP_002742726.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|237650544|ref|ZP_04524796.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae CCRI 1974]
 gi|237822639|ref|ZP_04598484.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae CCRI 1974M2]
 gi|298229452|ref|ZP_06963133.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254243|ref|ZP_06977829.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503103|ref|YP_003725043.1| phage integrase/recombinase [Streptococcus pneumoniae TCH8431/19A]
 gi|303262774|ref|ZP_07348712.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP14-BS292]
 gi|303267703|ref|ZP_07353526.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS457]
 gi|303270062|ref|ZP_07355780.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS458]
 gi|307127558|ref|YP_003879589.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae 670-6B]
 gi|14972364|gb|AAK75017.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae TIGR4]
 gi|147759364|gb|EDK66356.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP14-BS69]
 gi|147925998|gb|EDK77072.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP6-BS73]
 gi|147927783|gb|EDK78806.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP9-BS68]
 gi|182629144|gb|ACB90092.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CGSP14]
 gi|183571337|gb|EDT91865.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae SP195]
 gi|225720290|gb|ACO16144.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae 70585]
 gi|225727056|gb|ACO22907.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298238698|gb|ADI69829.1| phage integrase/recombinase [Streptococcus pneumoniae TCH8431/19A]
 gi|301794021|emb|CBW36419.1| putative integrase/recombinase [Streptococcus pneumoniae INV104]
 gi|301801716|emb|CBW34422.1| putative integrase/recombinase [Streptococcus pneumoniae INV200]
 gi|302636096|gb|EFL66593.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP14-BS292]
 gi|302640408|gb|EFL70837.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS458]
 gi|302642766|gb|EFL73090.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS457]
 gi|306484620|gb|ADM91489.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae 670-6B]
 gi|332073220|gb|EGI83699.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus
           pneumoniae GA17570]
 gi|332076174|gb|EGI86640.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus
           pneumoniae GA41301]
 gi|332076339|gb|EGI86804.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus
           pneumoniae GA17545]
          Length = 321

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 57/298 (19%), Positives = 122/298 (40%), Gaps = 29/298 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q ++   ++E G S  T++ Y+         +          +++ QL+  ++R++++ 
Sbjct: 47  LQLFITAKQVE-GCSSKTIRYYQRTIENLFNAIK---------ESVTQLTTDDLRSYLAN 96

Query: 78  RRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            +++K     +L      + SF  +L++ +   ++ I  ++ +K   ++     ++    
Sbjct: 97  YQSEKDCSKANLDNIRRILSSFFAWLEQEEYIIKNPIRRIKKIKTEQNVKETYTDEHLEI 156

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           + DN            + R+ AI+ LL   G+R+ E + L   +I  +     + GKG K
Sbjct: 157 MRDNCE----------NLRDLAIIDLLASTGMRVGELVQLNRSDIDFENRECVVFGKGKK 206

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--RGKPLNPGVFQRYIRQLRRYL 254
            R V      +  +  Y +        +    LF  +  + + L     +  +R+L   L
Sbjct: 207 ERPVYFDARTKIHLRNYLNDR-----KDSHPALFVTLVGKVQRLGIAGVEIRLRKLGDKL 261

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           G+      H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN  N      +
Sbjct: 262 GIQK-VHPHKFRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYAMVNQNNVKHSHQK 318


>gi|119714857|ref|YP_921822.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119535518|gb|ABL80135.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 329

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 64/296 (21%), Positives = 108/296 (36%), Gaps = 20/296 (6%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIG 84
             +R LS  T+ SY    R  L +L       +       ++ T I  F+      +   
Sbjct: 17  RSQRDLSNHTIGSYRDTWRMLLKYLTTTLGVSVDAVDFDAVTATNITRFLDYLEHERGNS 76

Query: 85  DRSLKRSLSGIKSFLKY---LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            ++    L+ I++ L +          T + +L +   + +  +   L   + + L    
Sbjct: 77  AKTRNVRLTAIRAVLGHALPDHPEHAATITQVLAIPPKRTTRPVIEFLRPDEVVAL---- 132

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLRIQGKGDKIRIV 200
            L     T     R+ A+L +    GLRISE  SLT  ++       +   GKG + RI 
Sbjct: 133 -LAAPDPTTRTGRRDHALLAMTVQTGLRISEVCSLTIDDVHLGTGPHVTCTGKGRRRRIT 191

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP--- 257
           PL  +    + +Y        +      LF G RG  L+    +  +             
Sbjct: 192 PLTGATVSVMTDYLTER----SARPGTALFCGPRGLSLSRDALEHRLATHVAAAAAACPS 247

Query: 258 ---LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                 T HTLRH+ A +LL+ G D+  I   LGH    +T  Y + +       +
Sbjct: 248 LTGKHVTMHTLRHTAAMNLLAAGVDVAVIALWLGHADTHSTDGYLHADMAIKQAAL 303


>gi|160874836|ref|YP_001554152.1| integron integrase [Shewanella baltica OS195]
 gi|160860358|gb|ABX48892.1| integron integrase [Shewanella baltica OS195]
 gi|315267074|gb|ADT93927.1| integron integrase [Shewanella baltica OS678]
          Length = 319

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 76/313 (24%), Positives = 127/313 (40%), Gaps = 58/313 (18%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RG S  T +SY    + F+ F      E +  + + Q        F++ +R   +   + 
Sbjct: 18  RGYSIRTEKSYLYWIKAFINFHHKRHPETMGTEEVAQF-----LTFLANQR--NVAINTQ 70

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           K +L+ +    +     ++      L      K   LP  L+  +   +++         
Sbjct: 71  KIALNALAYLYQKHLHHELGN----LGFCYATKQRYLPTVLSPSEISLILNE-------- 118

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVR 207
              +D R+  I+  LYG GLR+SE L L  Q+I  +Q++L ++ GKG K R   L     
Sbjct: 119 ---LDGRDRLIIERLYGSGLRVSECLRLRIQDIDIEQASLTVRDGKGHKDRQTILSHKCA 175

Query: 208 KAILEYYDLCPFDLNLNIQL-----------------------------------PLFRG 232
             +  Y +      + + Q                                    P    
Sbjct: 176 IKLTAYINKAMEIQHRDNQQGIGPSLPNALERKYPHAFKQHGWMFIFPSTTTCINPYTGT 235

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +    L+  V ++ +    R + +    T HT RHSFATHLL +G D+RS+Q +LGH  +
Sbjct: 236 LCRHHLHQSVIRKALGNAVRNIKITKRVTCHTFRHSFATHLLQSGSDIRSVQELLGHNDV 295

Query: 293 STTQIYTNVNSKN 305
           STTQIYT+V  ++
Sbjct: 296 STTQIYTHVLGQH 308


>gi|37677230|ref|NP_937626.1| putative integrase [Vibrio vulnificus YJ016]
 gi|37201775|dbj|BAC97596.1| putative integrase [Vibrio vulnificus YJ016]
          Length = 296

 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 76/305 (24%), Positives = 129/305 (42%), Gaps = 32/305 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q  L  L+++ G    T+ +Y    R+   +                L+  ++R + S+
Sbjct: 13  YQQHLTQLKLQ-GKRAKTISAYSLAVRRITEYFDRC---------PDTLTIEDLRRYFSQ 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q +   ++K    G++ F K+   ++       + +    K   LP  ++ +Q   +
Sbjct: 63  LIGQ-VSWSTIKLDRCGLQFFYKHTLNKQW----EWIGIIKPPKVKRLPNIISPEQVAQI 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDK 196
           ++             + R   +   LY  GLRI+EAL+LT  +I      + I+ GKG K
Sbjct: 118 INTTR----------EPRYRVLFLTLYTMGLRINEALNLTISDIDSHNMQVHIRYGKGGK 167

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+VPL      A+  Y+          +  P          N    Q+ ++Q+    G+
Sbjct: 168 DRLVPLPHRTLHALRRYWCTHRH---PKLLFPSKGKCCDVAFNDQGAQKALKQVVHECGI 224

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD---WMMEI 313
               T H+LRH FATHLL  G DLRS+Q +LGH  L+TT  YT +      D    + ++
Sbjct: 225 HKRITPHSLRHCFATHLLEQGLDLRSLQILLGHASLNTTARYTQLTQLKLHDANQALNQL 284

Query: 314 YDQTH 318
            D+ H
Sbjct: 285 ADRLH 289


>gi|302668703|ref|YP_003832528.1| tyrosine recombinase XerC2 [Butyrivibrio proteoclasticus B316]
 gi|302397043|gb|ADL35946.1| tyrosine recombinase XerC2 [Butyrivibrio proteoclasticus B316]
          Length = 352

 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 69/315 (21%), Positives = 124/315 (39%), Gaps = 23/315 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-------KITIQTIRQL 66
           L K  Q++++       LS  TL  Y  D   F  FL+   E+       + T+  + QL
Sbjct: 25  LPKFVQDYIE--SSRDYLSVSTLLQYTYDFVDFFTFLSSRIEKYKDKPIPEYTLVDMMQL 82

Query: 67  SYTEIRAFISKRRTQKI----GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           S  ++   +   +          R++ R LS + S   +  KR+   ++ +  +R     
Sbjct: 83  SCEDMDECMKWYKHPDKDVFRKPRTINRFLSTLSSLFTFYVKRRKLADNPVSAVRRPAVK 142

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDAR------NSAILYLLYGCGLRISEALSL 176
                 L E +    +  V+  T    + +         +  I  +    G+R+SE + L
Sbjct: 143 RKEVNRLYEGEKSQFLSAVMNGTGLTKRQLPYHERQWLRDYTIARVFLFTGIRVSELVGL 202

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
              ++   + +LR+  KG  I  V L       + EY          + +  LF   + +
Sbjct: 203 DISDVNLREHSLRVVRKGGNIERVYLDDETDLILREYLAEREEMELTDDETALFISRKKQ 262

Query: 237 PLNPGVFQRYIRQLRRYLGLPLS---TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            +     ++ I++  +  GLP      T H LR +FAT L S  GD+      +GH  ++
Sbjct: 263 RIGVRAVEKLIKKY-QQAGLPSHPNGLTPHRLRATFATDLYSATGDIYRTSKAMGHKSIA 321

Query: 294 TTQIYTNVNSKNGGD 308
           TT IY  V+ K   +
Sbjct: 322 TTTIYAEVSDKQKKE 336


>gi|170728630|ref|YP_001762656.1| integron integrase [Shewanella woodyi ATCC 51908]
 gi|169813977|gb|ACA88561.1| integron integrase [Shewanella woodyi ATCC 51908]
          Length = 319

 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 72/331 (21%), Positives = 136/331 (41%), Gaps = 63/331 (19%)

Query: 15  LKERQNWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           +K    +L+++  +   RG S  T ++Y    +++++F      E         LS  ++
Sbjct: 1   MKASSPFLESVRQDIRLRGYSLRTEKAYLYWIKRYILFHNKAHPET--------LSADDV 52

Query: 72  RAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           ++F++   T Q +   + K +L+ +        K ++      L      K  +LP  L+
Sbjct: 53  KSFLTWLATTQNVAVNTQKVALNSLVFLYHQYLKIELGD----LGFTLATKQRTLPTVLS 108

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            K+   ++ N+           +     ++ +LYG G+R++E L L  Q+I  +  +L I
Sbjct: 109 PKEIAQILSNM-----------NGTAKFVIEMLYGSGMRVNECLRLRVQDINIENLSLTI 157

Query: 191 Q-GKGDKIRIVPLLPSVRKAILEYY----------------------------------- 214
           + GKG+K R   L  S    +  Y                                    
Sbjct: 158 RDGKGNKDRQTLLSRSCSHLLTAYIDSAIELQSSDNENGFGPSLPYSLGKKYPKAFQQPA 217

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
            +  F  N   + P+ +       +    ++ ++       +      HT RHSFATHLL
Sbjct: 218 WMFVFPSNNISEHPVTKMPCRHHRHDSTIRKALQNAVGMTNIMKKVNCHTFRHSFATHLL 277

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             G D+R++Q +LGH  L+TT+IYT+V  ++
Sbjct: 278 QTGTDIRTVQELLGHNDLNTTKIYTHVLGQH 308


>gi|148984624|ref|ZP_01817892.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP3-BS71]
 gi|148997026|ref|ZP_01824680.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|149007165|ref|ZP_01830829.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP18-BS74]
 gi|149010476|ref|ZP_01831847.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP19-BS75]
 gi|168484778|ref|ZP_02709723.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC1873-00]
 gi|168575549|ref|ZP_02721485.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae MLV-016]
 gi|169832442|ref|YP_001694344.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae Hungary19A-6]
 gi|194397446|ref|YP_002037527.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae G54]
 gi|221231667|ref|YP_002510819.1| integrase/recombinase [Streptococcus pneumoniae ATCC 700669]
 gi|225854397|ref|YP_002735909.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae JJA]
 gi|225856554|ref|YP_002738065.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae P1031]
 gi|307067543|ref|YP_003876509.1| integrase [Streptococcus pneumoniae AP200]
 gi|147756726|gb|EDK63766.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|147761203|gb|EDK68170.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP18-BS74]
 gi|147764957|gb|EDK71886.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP19-BS75]
 gi|147923015|gb|EDK74130.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP3-BS71]
 gi|168994944|gb|ACA35556.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae Hungary19A-6]
 gi|172042056|gb|EDT50102.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC1873-00]
 gi|183578532|gb|EDT99060.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae MLV-016]
 gi|194357113|gb|ACF55561.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae G54]
 gi|220674127|emb|CAR68646.1| putative integrase/recombinase [Streptococcus pneumoniae ATCC
           700669]
 gi|225723828|gb|ACO19681.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae JJA]
 gi|225725861|gb|ACO21713.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae P1031]
 gi|301799879|emb|CBW32455.1| putative integrase/recombinase [Streptococcus pneumoniae OXC141]
 gi|306409080|gb|ADM84507.1| Integrase [Streptococcus pneumoniae AP200]
 gi|332201355|gb|EGJ15425.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus
           pneumoniae GA47368]
          Length = 321

 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 57/298 (19%), Positives = 122/298 (40%), Gaps = 29/298 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q ++   ++E G S  T++ Y+         +          +++ QL+  ++R++++ 
Sbjct: 47  LQLFITAKQVE-GCSSKTIRYYQRTIENLFNAIK---------ESVTQLTTDDLRSYLAN 96

Query: 78  RRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            +++K     +L      + SF  +L++ +   ++ I  ++ +K   ++     ++    
Sbjct: 97  YQSEKDCSKANLDNIRRILSSFFAWLEQEEYIIKNPIRRIKKIKTEQNVKETYTDEHLEI 156

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           + DN            + R+ AI+ LL   G+R+ E + L   +I  +     + GKG K
Sbjct: 157 MRDNCE----------NLRDLAIIDLLASTGMRVGELVQLNRSDIDFENRECVVFGKGKK 206

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--RGKPLNPGVFQRYIRQLRRYL 254
            R V      +  +  Y +        +    LF  +  + + L     +  +R+L   L
Sbjct: 207 ERPVYFDARTKIHLRNYLNDR-----KDSHPALFVTLVGKAQRLGIAGVEIRLRKLGDKL 261

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           G+      H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN  N      +
Sbjct: 262 GIQK-VHPHKFRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYAMVNQNNVKHSHQK 318


>gi|239828409|ref|YP_002951033.1| integrase [Geobacillus sp. WCH70]
 gi|239808702|gb|ACS25767.1| integrase family protein [Geobacillus sp. WCH70]
          Length = 292

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 70/304 (23%), Positives = 132/304 (43%), Gaps = 21/304 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ELL   + WL     E G +  T++SY  D + +  FL         +   + LS     
Sbjct: 3   ELLDAFKQWL----TEEGKAPKTIESYVGDIKSYQRFLGEKA-----VSDQQPLSRFSFV 53

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK----SNSLPRA 128
            +      +     ++ + ++ +K +  +L+K+ I +ES I   R+  +    S  +  A
Sbjct: 54  RYKQHLLDEGFAVATINKKINSLKVYNDFLQKKGIVSESYIQLKRDRVQIAAGSEHVVTA 113

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+E++   L+  +      +   +  RN  I YLL   G+R+SE +++   +I    +TL
Sbjct: 114 LSEEEVEKLLFYL-----EDRTKVSLRNKLIAYLLLYTGVRVSELVNIKLTDIDVLTATL 168

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            I+GKG K+R + L   + + I EY      +        L    R K ++    + ++ 
Sbjct: 169 MIRGKGGKVREISLRQDLVQLIKEYQIGERQESRFRESEYLLVSQRSKKMHRDAVRNWLA 228

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGG 307
            + + +G+      H  RH+FAT LL  G DL ++  + GH  ++ T + Y     +   
Sbjct: 229 NISKDIGI--KLHPHLFRHTFATRLLRKGVDLTTVSKLTGHSTVNMTAKFYIQTTREEKK 286

Query: 308 DWMM 311
             + 
Sbjct: 287 AAVE 290


>gi|303241940|ref|ZP_07328433.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302590495|gb|EFL60250.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 283

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 75/301 (24%), Positives = 121/301 (40%), Gaps = 23/301 (7%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           + + +   L+ E   S  T++ Y  D R +  +      +  TI     +    I  + S
Sbjct: 2   DIEEFANFLKNE-NKSTNTIKGYIADIRDYNKWFHETFSKDFTI-----IIRQNILEYKS 55

Query: 77  KRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--PRALNEKQ 133
             +  ++   +++   LS +  +  YL  + I  E  I N   +K       P  + E +
Sbjct: 56  YLQNIKRNNAKTINHKLSSLLKYNHYLVYKNIQKEIAIENNDKIKIQLQYASPTKVTETE 115

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-G 192
               + ++L          + RN A++  L   GLRISEAL++   +   D     I+ G
Sbjct: 116 VKQFLQSILESK-------NLRNYALMVFLAYTGLRISEALNIKMDDFDLDGKECIIRTG 168

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KGDK R V L   V  A+ EY  +       N    LF   + K L+     R  ++   
Sbjct: 169 KGDKQRSVMLNSKVITAVKEYLKVRSNISTANGSNYLFVSRKNKKLDRTTVNRIFKKYSN 228

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                 S T H LRH F T+ L  G     + +  GH  + TT +YTN + K   D M  
Sbjct: 229 ------SITPHQLRHFFCTNALEKGMLAHEVANQAGHSNIHTTLLYTNPDKKKLIDKMER 282

Query: 313 I 313
           +
Sbjct: 283 L 283


>gi|300872267|gb|ADK38961.1| IntI4 [Vibrio sp. V1(2010)]
          Length = 293

 Score =  159 bits (402), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 74/313 (23%), Positives = 129/313 (41%), Gaps = 61/313 (19%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGI 95
           ++Y     +++ F        +  +        E+  F++    Q  +  ++   +L+ +
Sbjct: 1   RAYLHWITRYIHFHNKKHPSLMGDK--------EVEEFLTYLAVQGKVATKTQSLALNSL 52

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
               K + K  ++ E   +  +  +    LP  L   +   L++            +D +
Sbjct: 53  SFLYKEILKTPLSLE---IRFQRSQLERKLPVVLTRDEIRRLLEI-----------VDPK 98

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR------- 207
           +   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V L   +        
Sbjct: 99  HQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQI 158

Query: 208 ----------------------KAILEYYDLCPFDLNLNIQLPLFR--------GIRGKP 237
                                  A+ E Y   P++   +   P F+         +R   
Sbjct: 159 ALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHH 218

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +N  V Q+ +++  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH  + TTQI
Sbjct: 219 MNETVLQKAVKRAAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQI 278

Query: 298 YTNVNSKNGGDWM 310
           YT+V  +     +
Sbjct: 279 YTHVLDRGASGVL 291


>gi|60256918|gb|AAX14941.1| integrase [Xanthomonas campestris pv. oryzae]
          Length = 315

 Score =  159 bits (402), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 68/311 (21%), Positives = 124/311 (39%), Gaps = 60/311 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           R  S  T Q+Y    R+F++                Q+   E+ AF++   T+  +   +
Sbjct: 19  RHYSLRTEQAYVGWIRRFILANGKRHPG--------QMGQVEVEAFLTDLATRGQVSAGT 70

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++L+ +    + +   ++     + N+   K+   +P  L+ ++   L+         
Sbjct: 71  QNQALAALLFLYREVLGVEL---PWMENLVRAKRPRRIPVVLSAEEVARLL--------- 118

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
               ++     +  LLYG G+R+ E L L  +++   +  + ++ GKG K R VP   S+
Sbjct: 119 --TMLEGSCRLMAGLLYGSGMRLLECLRLRIKDVDVVRGEIVVRDGKGGKDRRVPPPHSL 176

Query: 207 RKAILEYY------------------------------------DLCPFDLNLNIQLPLF 230
           R  +++                                          F        P  
Sbjct: 177 RGELMQQRERALLLHAADLAEGAGRVFLPHALARKYPNANVEPGWQYLFLAARRSVDPRS 236

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +    ++  V QR ++  RR  G+    T HTLRHSFATHLL  G D+ ++Q +LGH 
Sbjct: 237 GRVGRHHVSEEVLQRAVQSARRQAGIAKPATCHTLRHSFATHLLEAGHDIATVQELLGHK 296

Query: 291 RLSTTQIYTNV 301
            ++T QIY +V
Sbjct: 297 DVTTKQIYAHV 307


>gi|32474109|ref|NP_867103.1| integrase/recombinase [Rhodopirellula baltica SH 1]
 gi|32444646|emb|CAD74648.1| putative integrase/recombinase [Rhodopirellula baltica SH 1]
          Length = 347

 Score =  159 bits (402), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 104/226 (46%), Gaps = 21/226 (9%)

Query: 78  RRTQKIGDRSLKRSLSGIKSFL-KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                     +  +LS +++ L K+   R        + + + +KS  LP  +++K+   
Sbjct: 4   LVNGGASASEVSVTLSALRTGLDKFCLLRC------TVGLVSPRKSKQLPVVMSKKEVQR 57

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGD 195
           +++               R+  +L +LY  GLR++E   L   +   D+  +R+Q GKG 
Sbjct: 58  MMEA----------ARTLRDKLLLTVLYATGLRVAEVARLQWSDFDFDRQQIRVQLGKGK 107

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R V L   +   + + +        +    P       + L+P   QR ++Q R   G
Sbjct: 108 KDRYVMLADDLLPLMRQLWR---HTKGVGYLFPSEGRRVDRHLSPRTIQRAVKQARILSG 164

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  + T H+ RHSFATHL+ +G D+R IQ +LGH  L TT +YT V
Sbjct: 165 IGKAVTPHSFRHSFATHLIESGTDIRFIQKLLGHTNLETTSLYTKV 210


>gi|332204893|gb|EGJ18958.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus
           pneumoniae GA47901]
          Length = 321

 Score =  159 bits (402), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 57/298 (19%), Positives = 122/298 (40%), Gaps = 29/298 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q ++   ++E G S  T++ Y+         +          +++ QL+  ++R++++ 
Sbjct: 47  LQLFITAKQVE-GCSSKTIRYYQRTIENLFNAIK---------ESVTQLTTDDLRSYLAN 96

Query: 78  RRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            +++K     +L      + SF  +L++ +   ++ I  ++ +K   ++     ++    
Sbjct: 97  YQSEKDCSKANLDNIRRILSSFFAWLEQEEYIIKNPIRRIKKIKTEQNVKETYTDEHLEI 156

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           + DN            + R+ AI+ LL   G+R+ E + L   +I  +     + GKG K
Sbjct: 157 MRDNCE----------NLRDLAIIDLLASTGMRVGELVQLNRSDIDFENRECVVFGKGKK 206

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--RGKPLNPGVFQRYIRQLRRYL 254
            R V      +  +  Y +        +    LF  +  + + L     +  +R+L   L
Sbjct: 207 ERPVYFDARTKIHLRNYLNDR-----KDSHPALFVTLVGKVQRLGIAGVEIRLRKLGDKL 261

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           G+      H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN  N      +
Sbjct: 262 GIQK-VPPHKFRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYAMVNQNNVKHSHQK 318


>gi|229015121|ref|ZP_04172177.1| Integrase/recombinase [Bacillus mycoides DSM 2048]
 gi|228746174|gb|EEL96121.1| Integrase/recombinase [Bacillus mycoides DSM 2048]
          Length = 330

 Score =  159 bits (402), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 61/288 (21%), Positives = 123/288 (42%), Gaps = 14/288 (4%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA--FISKRRTQKIGDR 86
           R L   T++ Y  + + FL  L    E  ++I     ++   ++    +  +  + I   
Sbjct: 41  RNLRPFTIKYYLNELQAFLNLLTE-QEIDVSILKPYNMTEEHVKENVILYMKNYRGIKVV 99

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S+   L  +++F  +L K+K    + + N++ LK    +    +++Q      N L    
Sbjct: 100 SINTRLRALRAFYNFLYKQKHIPRNPMENIKLLKDRKRIIPTFSKEQL-----NKLFRQP 154

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPS 205
           +   +   R+  I+ L+   G+RI+E + L+ ++I  + S L I+  K  + R VP+   
Sbjct: 155 NLRTFTGVRDYTIMMLMLETGIRINELVGLSVKDIRWEDSLLVIRNAKSYRERQVPIQKD 214

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-STTAHT 264
           ++  + +Y  +  +         LF  + G  L     Q+ I        +     + HT
Sbjct: 215 MKSQLKKYIAIRGYV----ESSALFVTVDGTRLTRRGIQQRISIYGNMAQIKDVRCSPHT 270

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            RH+FA   +  G ++  +Q+ILGH  +   + Y N+   +  D   E
Sbjct: 271 FRHTFAKLSVQQGANIFELQAILGHTNMEIVRTYVNLFGNDVRDRHKE 318


>gi|37955774|gb|AAP22612.1| IntI1 [Pseudomonas aeruginosa]
          Length = 319

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 69/320 (21%), Positives = 128/320 (40%), Gaps = 64/320 (20%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSIL 287
           SFAT LL +G D+R++Q +L
Sbjct: 282 SFATALLRSGYDIRTVQDLL 301


>gi|227461207|gb|ACP39548.1| putative integron integrase [uncultured microorganism]
          Length = 307

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 67/311 (21%), Positives = 118/311 (37%), Gaps = 60/311 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           R  +  T ++Y     +++ F   +          R+L    I AF++    +  +   +
Sbjct: 19  RHYALRTEEAYVDWIVRYIRFHRPHHP--------RELDAAAIAAFLTHLAVEGQVSAAT 70

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++ S +    + +    I T   +  +   +    LP  L+  +   ++         
Sbjct: 71  QNQARSALLFLYRAVLDIDIET---LQEIAPARMPKRLPAVLSRAEVRAVLRE------- 120

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
               +D     +  LLYG GLR+ E + L  ++I  +Q  L I+ GKG K R+  L   +
Sbjct: 121 ----LDGSYRLMGQLLYGSGLRLLECVRLRVKDISFEQHQLTIRDGKGAKDRVTMLPDQL 176

Query: 207 RKAI------------------------------------LEYYDLCPFDLNLNIQLPLF 230
            + +                                     E+     F        P  
Sbjct: 177 VEPLGEHLQRARRLHQDDLERGCGAVYLPTALERKYPNASAEWGWQYVFPAERLSVDPRS 236

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
              R   ++    Q+ +R+     G+    + HT RHSFATHLL NG D+R++Q +LGH 
Sbjct: 237 GVRRRHHVSESGLQKAVRRAVLASGVQKPASCHTFRHSFATHLLENGYDIRTVQELLGHA 296

Query: 291 RLSTTQIYTNV 301
            + TT IYT+V
Sbjct: 297 DVRTTMIYTHV 307


>gi|332532602|ref|ZP_08408479.1| integron integrase IntI4 [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038023|gb|EGI74471.1| integron integrase IntI4 [Pseudoalteromonas haloplanktis ANT/505]
          Length = 320

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 75/326 (23%), Positives = 135/326 (41%), Gaps = 64/326 (19%)

Query: 21  WLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +L  +  +   +  +K T+++Y      F+ F         +++    +   E+  F++ 
Sbjct: 5   FLTMIAEQMYLKRYAKSTVKAYLYWIASFIRFN--------SMRHPTTMGDNEVELFLNH 56

Query: 78  R-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               Q +   +  ++L+ +    K + K+ ++     L     K++  LP  L +++   
Sbjct: 57  LVNQQNVAPNTQAQALNALSFLFKEVIKKPLSLS---LGFIKSKRATKLPVVLTQQEINN 113

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGD 195
                        K   A++     LLYG G+R+ E L L   +I  D + +RI  GKG 
Sbjct: 114 FF-----------KVCSAKHYLPCGLLYGSGMRLMEVLRLRIHDIDFDYNCIRIWDGKGG 162

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG----------------------- 232
           K R+V L   +   +     L    L L+++ PL+ G                       
Sbjct: 163 KNRVVTLAVELTPQLRSQIQLVDSYLQLDLKNPLYSGAYMPHLLRKKYPNHNRQLGWQYL 222

Query: 233 --------------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
                         +R   ++    QR +++      +    T HTLRHSFATHLL +G 
Sbjct: 223 FSSHKLSIDPESKQLRRHHIDEKQLQRAVKKAAFDAHINKHVTPHTLRHSFATHLLQSGA 282

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSK 304
           D+R++Q+ LGH  + TTQIYT+V  +
Sbjct: 283 DIRTVQTQLGHSDVRTTQIYTHVLQQ 308


>gi|192361592|ref|YP_001983640.1| integrase [Cellvibrio japonicus Ueda107]
 gi|190687757|gb|ACE85435.1| integrase [Cellvibrio japonicus Ueda107]
          Length = 323

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 74/314 (23%), Positives = 131/314 (41%), Gaps = 61/314 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRS 87
           R  +K T+++Y    +++++F        +  +        E+ A++     Q  +   +
Sbjct: 17  RRYAKRTIETYLHWIKRYIVFHNKQHPSLMGDR--------EVEAYLDHLVLQHNVAGPT 68

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
               L+ +    + +  + ++ E   L     +K+  LP  L   +   L+ N       
Sbjct: 69  QALVLNALSFLYREILHKPLSLE---LRFVKSQKTRKLPVVLTRDEITALMAN------- 118

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
               I + +     L+YG GLR+ EA+ L  ++I  D   +R+  GKG K R V L P +
Sbjct: 119 ----ISSNHYLPAALMYGSGLRLMEAVRLRTKDIDFDYCCVRVWNGKGGKHRTVTLAPEL 174

Query: 207 RKAILEYYDLCPFDLNLNIQLP--------------------------LFRG-------- 232
           +K +        + L+ ++  P                          LF          
Sbjct: 175 KKPLTVQIQRVEYLLSKDLLNPTYDGVWLPHALRHKYVSANTSLGWQYLFPSDRLSIDPE 234

Query: 233 ---IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
              +R   ++    Q+ IR   +   +    +AHTLRHSFATHLL++G D+R++Q  LGH
Sbjct: 235 NQRVRRHHIDESGLQKAIRNASQKANIRKHVSAHTLRHSFATHLLASGADIRTVQDQLGH 294

Query: 290 FRLSTTQIYTNVNS 303
             + TTQIYT+V  
Sbjct: 295 TDVKTTQIYTHVLQ 308


>gi|12642604|gb|AAK00305.1|AF314190_1 integrase IntI7 [uncultured bacterium PG11]
          Length = 303

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 71/317 (22%), Positives = 126/317 (39%), Gaps = 60/317 (18%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQ 81
           ++L   R LS  T +SY    +++++F               +L    + AF+S     +
Sbjct: 9   RDLIRTRHLSIRTEESYLAWIKRYILFHRKRHP--------SELGAQHLSAFLSHPAVKR 60

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +   +  +SLS I    + +   ++     I ++   ++   LP A    +   ++   
Sbjct: 61  HVSASTQNQSLSAILFLYREVLGVEL---DWITDVARAQRPKRLPVAFTRAEVNAVL--- 114

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV 200
                 +T W+      +  LLYG GLR+ E + L  +++      + ++ GKG K R+ 
Sbjct: 115 --ARLRDTTWL------MASLLYGSGLRLMECVRLRVKDVDFGNHQIIVRDGKGAKDRVT 166

Query: 201 PLLPSVRKAI------------------------------------LEYYDLCPFDLNLN 224
            L   V +++                                     E+     F  +  
Sbjct: 167 MLPAPVEESLKRHLTRVKALHEQDVRDGFGGVYLPFALERKYKHAEREWMWQYVFPASRR 226

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
            + P     +   +   V QR ++   R  G+    + HT RHSFATHLL  G D+R+IQ
Sbjct: 227 SRDPRSGREQRHHVAETVLQRAVKAAVRQAGIEKPGSCHTFRHSFATHLLGAGYDIRTIQ 286

Query: 285 SILGHFRLSTTQIYTNV 301
            ++GH  L TT IYT+V
Sbjct: 287 ELMGHSDLHTTMIYTHV 303


>gi|30248467|ref|NP_840537.1| Phage integrase [Nitrosomonas europaea ATCC 19718]
 gi|30138353|emb|CAD84361.1| Phage integrase [Nitrosomonas europaea ATCC 19718]
          Length = 292

 Score =  158 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 65/305 (21%), Positives = 119/305 (39%), Gaps = 60/305 (19%)

Query: 41  CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFL 99
              ++F++F      +++           EI AF++      K+   +  ++LS +    
Sbjct: 2   QWIKRFILFHGKRHPQEMG--------SAEIEAFLTHLAVAGKVSASTQNQALSALLFLY 53

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           K +    +   +    +   K+   LP  L   +   ++             +      +
Sbjct: 54  KEILSIDLPWLN---EIVRAKQPQRLPTVLTRTEVQAIL-----------VRMSGTYGLM 99

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAIL------- 211
             LLYG G+R+ E + L  +++  ++  + I+ GKG K R+  L  S+   +        
Sbjct: 100 ANLLYGTGMRLMECVRLRVKDVDFERGEILIRDGKGSKDRVTMLPESLAGPLQAHLLHRR 159

Query: 212 -----------------------------EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
                                        ++     F        P     R   ++  +
Sbjct: 160 TLFDDDSRLGKASVYLPDALERKYPNAATDWVWQYIFSSGSFSIDPRSGTERRHHIDEKL 219

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            QR +++  +  G+    T HTLRHSFATHLL +G D+R+IQ +LGH  + TT IYT+V 
Sbjct: 220 LQRAMKKAVQASGITKLATPHTLRHSFATHLLDSGYDIRTIQELLGHKDVHTTMIYTHVL 279

Query: 303 SKNGG 307
           +K G 
Sbjct: 280 NKGGR 284


>gi|295087104|emb|CBK68627.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 470

 Score =  158 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 63/301 (20%), Positives = 121/301 (40%), Gaps = 27/301 (8%)

Query: 16  KERQNWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +E + +L +    +   G S  TL  Y     + L+ L+           I  ++ ++IR
Sbjct: 190 QENEQFLNSFISAKKIEGCSDKTLAYYRNTIERLLVTLSM---------AICHITTSDIR 240

Query: 73  AFISKRRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
            ++S  + +    + ++        SF  +L+      +S +  +  +K  + +   L++
Sbjct: 241 TYLSDYQEEHQSSKVTIDNMRRIFSSFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSD 300

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           +Q   L D+            + R+ AI+  L   G+R+ E + L  ++I   +    + 
Sbjct: 301 EQLEQLRDSC----------TNKRDLAIIDFLSSTGIRVGELVKLNREDIDFHERQCVVF 350

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG+K R+V      +  + +Y +    D   N  L +        L     +  IR+L 
Sbjct: 351 GKGNKERVVYFNARTKLHLQQYLNGRTDD---NPALFVSLHSPHTRLTISGVEVRIRKLG 407

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             L +P     H  R + AT  +  G  +  +Q +LGH R+ TT  Y  VN  N      
Sbjct: 408 HTLSMPK-VHPHKFRRTLATMAIDKGMPIEQVQRLLGHVRIDTTLHYAIVNQNNVKLAHK 466

Query: 312 E 312
           +
Sbjct: 467 K 467


>gi|120597821|ref|YP_962395.1| phage integrase family protein [Shewanella sp. W3-18-1]
 gi|120598661|ref|YP_963235.1| phage integrase family protein [Shewanella sp. W3-18-1]
 gi|120557914|gb|ABM23841.1| phage integrase family protein [Shewanella sp. W3-18-1]
 gi|120558754|gb|ABM24681.1| phage integrase family protein [Shewanella sp. W3-18-1]
          Length = 287

 Score =  158 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 124/292 (42%), Gaps = 36/292 (12%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q +   + + RG S  T  +Y     Q   +           Q +  ++  ++ A+   
Sbjct: 5   LQQFHDEISL-RGYSARTRNAYLYAITQLQQYAN---------QPLDNITDEQLTAYFRY 54

Query: 78  RR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               +     +LK  L+GI  F +++ KR        + +   K+ + LP+ L+ +    
Sbjct: 55  LNLERHHSRATLKLQLNGIHFFYEHVLKRDF-----TIQLSLPKRPHKLPQLLSCQDIAA 109

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195
           L+ +              +  A+L L YGCGLR+SE   +   +I   +  L++ QGKG 
Sbjct: 110 LLYHC----------QSLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGA 159

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG---KPLNPGVFQRYIRQLRR 252
             R V + P++   + +Y+              LF         PL+   F++ + +  R
Sbjct: 160 CDRWVIISPTLLTLLRQYWQAYH------PVEWLFASTYHDVVYPLHESTFRKALAKAAR 213

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             G+    + H+LRH++ATH L  G  L  +Q+ LGH  + +T+ Y + + +
Sbjct: 214 LAGITKPCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPE 265


>gi|196041298|ref|ZP_03108592.1| integrase/recombinase [Bacillus cereus NVH0597-99]
 gi|196027783|gb|EDX66396.1| integrase/recombinase [Bacillus cereus NVH0597-99]
          Length = 330

 Score =  158 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 63/290 (21%), Positives = 128/290 (44%), Gaps = 18/290 (6%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR--QLSYTEIRA--FISKRRTQKIG 84
           R L   T++ Y  + + FL  L   TE++I +  +R   ++   ++    +  +  + I 
Sbjct: 41  RNLRPFTIKYYLNELQAFLNLL---TEQEIDVSLLRPYNMTEEHVKENVILYMKNYRGIK 97

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S+   L  +++F  +L K+K    + + N++ LK    +    +++Q      N L H
Sbjct: 98  VVSINTRLRALRAFYNFLYKQKHIPRNPMENIKLLKDRKRIIPTFSKEQL-----NKLFH 152

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLL 203
             +   +   R+  I+ L+   G+R++E + L+ ++I  + S L I+  K  + R VP+ 
Sbjct: 153 QPNLRTFTGVRDYTIMMLMLETGIRVNELVGLSVKDIRWEDSLLVIRNAKSYRERQVPIQ 212

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-STTA 262
             ++  + +Y  +  +         LF  + G  L     Q+ I        +     + 
Sbjct: 213 RDMKNQLKKYIAIRGYV----ESTALFVTVDGTRLTRRGIQQRISIYGNMAQIKDVRCSP 268

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           HT RH+FA   +  G ++  +Q+ILGH  +   + Y N+   +  D   E
Sbjct: 269 HTFRHTFAKLSVQQGANIFELQAILGHTNMEIVKTYVNLFGNDVRDRHKE 318


>gi|167628714|ref|YP_001679213.1| phage recombinase [Heliobacterium modesticaldum Ice1]
 gi|167591454|gb|ABZ83202.1| phage recombinase [Heliobacterium modesticaldum Ice1]
          Length = 349

 Score =  158 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 66/328 (20%), Positives = 130/328 (39%), Gaps = 28/328 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+ N L  +++         ++  L   +G S+ T+ SY+   +    FL          
Sbjct: 1   MKTNTLLTVLT-------DYFMSYLPDVKGYSQNTITSYQYAFQLLYDFLLEEKGLPPEK 53

Query: 61  QTIRQLSYTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITT----ESNILN 115
            T + LS   I  +++     +     +     + I SF K+  K+ +       S++  
Sbjct: 54  ITFKSLSSEIISKYLTWLEVNRGCSPATRNLRRTAISSFSKFALKKNLGEALQFHSSVAE 113

Query: 116 MRNLKKSNSL-PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           +       +   +   +++       ++L+     + I  R+  +L LLY  G R  E  
Sbjct: 114 IPPKNTHKNTDIKYFTKEEI-----AIILNMPDTGRAIGKRDVMLLSLLYASGARAQELC 168

Query: 175 SLTPQNIMDDQST-LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN--LNIQLPLFR 231
            LT  +I   + T +R+ GKG+K R+V +  +    +  Y +    D +   +    +F 
Sbjct: 169 DLTLNDIYLGKETNIRLVGKGNKARLVTIPQNCAVMLKNYLESRNLDSSSPKDRLKHIFS 228

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLP-------LSTTAHTLRHSFATHLLSNGGDLRSIQ 284
               + ++    +  +++                + T H+ RHS A H+L  G  L  I+
Sbjct: 229 SQTNEKMSISCVEEIVKKYVIKSKKAYPQLFKRKTYTPHSFRHSIAVHMLECGESLVVIK 288

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMME 312
           + LGH  + TT IY NV  +    ++ E
Sbjct: 289 AFLGHTSIMTTTIYANVTPELANKYLRE 316


>gi|290243122|ref|YP_003494792.1| integrase family protein [Thioalkalivibrio sp. K90mix]
 gi|288945627|gb|ADC73325.1| integrase family protein [Thioalkalivibrio sp. K90mix]
          Length = 322

 Score =  158 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 57/258 (22%), Positives = 121/258 (46%), Gaps = 6/258 (2%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102
            R     L + + + +  +T+R+    ++R    +  +Q++   +    LS  +  +  +
Sbjct: 46  LRSVAASLGYESPDAVPWETLRRGDALDLRD---ELVSQELSPATQSLYLSVFRGVMHEV 102

Query: 103 KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
                 +     ++R +K +    +      A   +D    H   +   I  R++A++ +
Sbjct: 103 WVAGRISGDEFQHIREVKAAKGKRQPRGRAVAEDEMDCFTQHLERDRTPIGIRDAALVNV 162

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           LY  G+R SE + L   +++ ++  + I+GKG++ R   +      A+  + D    + +
Sbjct: 163 LYSTGMRRSEVVDLRIGDLVPEEKAVLIRGKGNRERTGYMDDVAWDALNHWIDEVRGERD 222

Query: 223 LNIQLPLFRG--IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
             + LP+ RG  I+ + ++     + +R+      +P +   H +R SFAT LL NG DL
Sbjct: 223 GPLFLPMARGGHIQWRRMSDQAVAKVVRERSMEAAMPPTL-PHDMRRSFATQLLDNGTDL 281

Query: 281 RSIQSILGHFRLSTTQIY 298
            ++Q ++GH  ++TTQIY
Sbjct: 282 LTVQRLMGHSSVTTTQIY 299


>gi|223983261|ref|ZP_03633454.1| hypothetical protein HOLDEFILI_00734 [Holdemania filiformis DSM
           12042]
 gi|223964754|gb|EEF69073.1| hypothetical protein HOLDEFILI_00734 [Holdemania filiformis DSM
           12042]
          Length = 343

 Score =  158 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 67/310 (21%), Positives = 126/310 (40%), Gaps = 25/310 (8%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           +++ EI  +   +    ++   EIE G SK T + YE    +          EKI + +I
Sbjct: 55  DSVSEICKYSNEELISKFISAKEIE-GCSKRTTKYYESTLIKM--------NEKINM-SI 104

Query: 64  RQLSYTEIRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
             ++  ++R +++  ++       S+      + SF  +L++     +S +  +  +K  
Sbjct: 105 TYMTTDDLRTYLTDYQKMNNCSKASVDNIRRNLSSFFSWLEEENYILKSPMKRIHKIKTD 164

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             +    +++    L D+              R+ AI+ LL   G+R+ E + L   +I 
Sbjct: 165 KVIKETYSDETLELLRDSC----------TSLRDLAIIDLLSSTGMRVGELVKLNINDID 214

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
            +     + GKG+K R V      +  +  Y +    D   N  L +   +    L    
Sbjct: 215 FENRECVVFGKGNKERPVYFDARTKIHLKNYLNTRNDD---NPALFVSLDLPHDRLKISG 271

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +  +RQL R LG+      H  R + AT  +  G  +  +QS+LGH ++ TT  Y  VN
Sbjct: 272 VEIRLRQLGRRLGISK-VHPHKFRRTVATKAIDKGMPIEQVQSLLGHSQIDTTMHYAMVN 330

Query: 303 SKNGGDWMME 312
             N  +    
Sbjct: 331 QNNVKESHRR 340


>gi|239828168|ref|YP_002950792.1| integrase [Geobacillus sp. WCH70]
 gi|239808461|gb|ACS25526.1| integrase family protein [Geobacillus sp. WCH70]
          Length = 329

 Score =  158 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 62/322 (19%), Positives = 132/322 (40%), Gaps = 22/322 (6%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M  N++ +  + +     + +L++ EI R     T+Q Y  +   F   L     E    
Sbjct: 16  MHTNSI-QSDAIDFQIALEKFLEDCEI-RNCRPQTIQYYRNELSVFYKILREQGIEVNIY 73

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRN 118
           +   ++    +  ++  ++  K    ++   L  +++F  +L++ KI ++  +    ++ 
Sbjct: 74  RMTPEIIKQNVILYMKNQKNCK--TVTINTRLRALRAFFNFLEREKIISKKQNPFHEIKL 131

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           LK          +++      ++L    +   +   R+  I+ LL   G+R SE + +  
Sbjct: 132 LKDRKKAVPTFTKEEI-----HILFKQPNLRTFTGVRDLTIMMLLLETGIRASECVGIRL 186

Query: 179 QNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
            +I   +S + IQ  KG + R VP+   +++ + +Y  +            LF  +   P
Sbjct: 187 GDIDFQRSRILIQNTKGYRQRYVPIQKQMKEQLKKYLAIRGTL----DHDYLFVSVDDTP 242

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L     Q  I    +  G+    T H  RH+FA   +  G  +  +Q++LGH  +   + 
Sbjct: 243 LTKRQMQAQIESYGKKCGI--HATCHKFRHTFARLSVEAGAGIFELQAVLGHSSMEMVKH 300

Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319
           Y N+      D ++E +    P
Sbjct: 301 YVNL----FSDDVVEKHKSFSP 318


>gi|134298789|ref|YP_001112285.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134051489|gb|ABO49460.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 294

 Score =  158 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 133/295 (45%), Gaps = 15/295 (5%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+  + +R  S LT+  Y+ +  +F  +L     E   ++    +   + + ++     +
Sbjct: 7   LEYQKQDR--SPLTVAGYQTELEKFQQWLWTTVNEP--LERATDMDVKDYKQYL--LTVK 60

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
           K    ++ R L  ++ +  +   + +   +   N++ ++   + P+ L+   A  L   V
Sbjct: 61  KQKPSTVNRGLKVLRKYYSWAVIQGLIQYNPAANVKLVRVQQAAPKWLDRIDAARLKRAV 120

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQ-GKGDKIR 198
           L        +  AR+ AIL L+ G GLR++E  +L   +  + + + T+ ++ GKG+K  
Sbjct: 121 L--NDEHNAFKRARDYAILLLMLGAGLRVAEVAALELADIIMSERKGTVIVRKGKGNKYA 178

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            VPL   VR+A+ EY D+    +  +    LF G RG P+     Q  + +      +  
Sbjct: 179 EVPLNKDVRQALNEYLDIRKT-VKCSDSTFLFLGERG-PIKKRAIQFRVEKYAGKSSV-- 234

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +AH LRH+F   L+++G  L  +  +  H  ++TT  Y   +       + +I
Sbjct: 235 KASAHQLRHTFCKELINHGEPLNVVAHLSRHSDVNTTMRYITPSESELSHAVEKI 289


>gi|78223999|ref|YP_385746.1| integron integrase [Geobacter metallireducens GS-15]
 gi|78195254|gb|ABB33021.1| Integron integrase [Geobacter metallireducens GS-15]
          Length = 449

 Score =  158 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 75/309 (24%), Positives = 131/309 (42%), Gaps = 59/309 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRS 87
           R  S+ TL++Y   +R+F  FL          +  ++LS  +++ +++    +  +   +
Sbjct: 147 RHYSRKTLKTYALWSRKFQRFLKN--------KPPQELSTADVKEYLTYLAVKCNVAAST 198

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++ + +    ++  KR+      + ++   KKS  +P  L+ ++   ++         
Sbjct: 199 QNQAFNSLLFLFRHGLKREFGE---LRDVPRAKKSLYVPVVLSREEIDAIL--------- 246

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
             K +    S ++ LL+GCGLR+ E L L  ++   D   L + GKG K R VPL  ++ 
Sbjct: 247 --KHLSHPFSLVVNLLFGCGLRLFECLQLRVRDFNFDAVVLTVHGKGKKDRTVPLPEAIL 304

Query: 208 ----------------------------KAILEYYDLCPFDLNLNIQLP--------LFR 231
                                        A+ + Y   P +L      P           
Sbjct: 305 PELTAQIERVKALHEKDLAAGYAGVFLDDAVEKKYPHAPKELIHQWFFPQQSLTLVEETG 364

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
            +R   L+  + Q  +    R   +P   TAHT RHS+ATHLL    D+R+IQ+ LGH  
Sbjct: 365 ELRRYHLHESLLQEALYVAVRRAKIPKRVTAHTFRHSYATHLLQANYDIRTIQTKLGHAS 424

Query: 292 LSTTQIYTN 300
           L TT IYT+
Sbjct: 425 LKTTMIYTH 433


>gi|118470883|ref|YP_888435.1| transposase A [Mycobacterium smegmatis str. MC2 155]
 gi|118172170|gb|ABK73066.1| transposase A [Mycobacterium smegmatis str. MC2 155]
          Length = 346

 Score =  158 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 74/352 (21%), Positives = 127/352 (36%), Gaps = 74/352 (21%)

Query: 16  KERQNWLQNLE-IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
              + +L+ L  IER  S  T+++Y  D + +  FL             + +S  +I AF
Sbjct: 4   APVERYLKYLTDIER--SPNTIKAYAHDLKDWFTFLGGRG------LDWQSVSLEDIGAF 55

Query: 75  ISKRR----------------TQKIGDRSLKRSLSGIKSFLKYLKKRKIT---------- 108
           +   R                    G+ ++ R LS + +F  +  +  I           
Sbjct: 56  VVWLRLPTALRQGGIAVLPSVEHHCGESTVNRKLSALAAFYLHAVRDGIDVGELLTTWQI 115

Query: 109 ----------------TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
                              +     +LK    LPR L   +  TL+D             
Sbjct: 116 GGSRGGWKPFLHHISKHMPSPRRTVSLKAPKKLPRVLTPGEVQTLLDACDR--------- 166

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR------IVPLLPSV 206
             R+  +L LLY  G+RI EAL L   +I   +  + +  + +  R         ++P  
Sbjct: 167 -LRDRFLLALLYDAGMRIGEALGLRHSDIAAAERQVTVCRRDNDNRARAKSLTARIVPVS 225

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRG----KPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            + I  Y D    +        +F  + G     PL  G     +R+LRR   +      
Sbjct: 226 AELIRLYADYLHAEYGDLDSDYVFVNLWGRPHGHPLTYGAVYDLVRRLRRRTAIDFD--P 283

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           H LRH+ AT +L +G  L  +  +LGH  ++ T   Y ++N ++    M + 
Sbjct: 284 HWLRHTAATRMLRDGIGLEVVAKLLGHANVTVTAATYGHLNVEDARKAMEQA 335


>gi|134098863|ref|YP_001104524.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
 gi|291005779|ref|ZP_06563752.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
 gi|133911486|emb|CAM01599.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
          Length = 329

 Score =  158 bits (400), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 73/322 (22%), Positives = 131/322 (40%), Gaps = 13/322 (4%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +P      L    + +L++L+  R L+  +L++Y  D       LA  T        + +
Sbjct: 1   MPRQEDASLAHWIEVYLEHLQA-RKLAANSLRAYRLDLTAVAGELAELTGRGTAELPVDE 59

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           L+ + +R+    R        S+ R+ S    F  +L    +   + +  +   + + + 
Sbjct: 60  LTTSVLRS-AFARHAAARSASSVTRTWSTWNGFFGFLVVEGVVGGNPMQVIPKPRTAPAT 118

Query: 126 PRALN-EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           P+ L  E     L+  V             R+ A+L  L   G+R +E L L   ++   
Sbjct: 119 PKPLQGEDTPERLLRTVSAGVRRARNPWPERDLAVLATLLCTGVRSAELLDLKVGSLAGR 178

Query: 185 QS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNP 240
                L ++GKG K R +P+  ++   I  Y +         +    PLF   R +PL  
Sbjct: 179 AGDRRLHVRGKGGKNRSIPIEDALDSVIQNYLETRRARFGERLPGSDPLFVDHREEPLRR 238

Query: 241 GVFQRYIRQLRRYLG----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           G  Q  +RQ  R  G    +      H LRH+FAT L  +G     I  +LGH  ++++Q
Sbjct: 239 GGLQYLVRQSLRAAGMSDRVQRGAMVHALRHTFATRLAEDGASAAEIAKLLGHASINSSQ 298

Query: 297 IYTNVNSKNGGDWMMEIYDQTH 318
            Y +V ++     +    ++TH
Sbjct: 299 TYIDVTAREQRLSVRA--NRTH 318


>gi|300872279|gb|ADK38967.1| IntI4 [Vibrio sp. V49(2010)]
          Length = 297

 Score =  158 bits (400), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 77/317 (24%), Positives = 132/317 (41%), Gaps = 61/317 (19%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGI 95
            +Y     +++ F        +  +        E+  F++    Q  +  ++   +L+ +
Sbjct: 1   AAYLHWITRYIHFHNKKHPSLMGDK--------EVEEFLTYLAVQGKVATKTQSLALNSL 52

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
               K + K  ++ E   ++ +  +    LP  L   +   L++            +D +
Sbjct: 53  SFLYKEILKTPLSLE---IHFQRSQLERKLPVVLTRDEIRRLLEI-----------VDPK 98

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRK------ 208
           +   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V L   + +      
Sbjct: 99  HQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYQHLKEQI 158

Query: 209 -----------------------AILEYYDLCPFDLNLNIQLPLFR--------GIRGKP 237
                                  A+ E Y   P++   +   P F+         +R   
Sbjct: 159 ALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHH 218

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH  + TTQI
Sbjct: 219 INETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQI 278

Query: 298 YTNVNSKNGGDWMMEIY 314
           YT+V  +     +  IY
Sbjct: 279 YTHVLDRWCSSIIKPIY 295


>gi|300872281|gb|ADK38968.1| IntI4 [Vibrio sp. V82(2010)]
          Length = 293

 Score =  158 bits (400), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 75/313 (23%), Positives = 129/313 (41%), Gaps = 61/313 (19%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGI 95
           ++Y     +++ F        +  +        E+  F++    Q  +  ++   +L+ +
Sbjct: 1   RAYLHWITRYIHFHNKKHPSLMGDK--------EVEEFLTYLAVQGKVATKTQSLALNSL 52

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
               K + K  ++ E   +  +  +    LP  L   +   L++            +D +
Sbjct: 53  SFLYKEILKTPLSLE---IRFQRSQLERKLPVVLTRDEIRRLLEI-----------VDPK 98

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR------- 207
           +   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V L   +        
Sbjct: 99  HQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQI 158

Query: 208 ----------------------KAILEYYDLCPFDLNLNIQLPLFR--------GIRGKP 237
                                  A+ E Y   P++   +   P F+         +R   
Sbjct: 159 ALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHH 218

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH  + TTQI
Sbjct: 219 MNETVLQKAVRRAAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQI 278

Query: 298 YTNVNSKNGGDWM 310
           YT+V  +     +
Sbjct: 279 YTHVLDRGASSVL 291


>gi|256845343|ref|ZP_05550801.1| tyrosine recombinase XerC [Fusobacterium sp. 3_1_36A2]
 gi|256718902|gb|EEU32457.1| tyrosine recombinase XerC [Fusobacterium sp. 3_1_36A2]
          Length = 290

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 62/293 (21%), Positives = 115/293 (39%), Gaps = 12/293 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + K  ++++  LE E      T+ S   D   FL +L      K  I T+ +L    IR 
Sbjct: 7   IEKAVKDFIYYLEFEENKKNNTVISIRKDLNNFLGYL-----NKKNITTLDKLDELIIRE 61

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++++ +   + + +  R LS IK F KYL    +  +   + +   K      + LN  +
Sbjct: 62  YLTELKDFDLSNSTYNRRLSSIKKFYKYLINNNLKEKGKEILIEGKKSDEKKIQYLNSDE 121

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L + +      E  +   R+  +  LLY  G+ ++E LSL   N   ++  + +  K
Sbjct: 122 IKILREEM-----KEESFNVLRDRLMFELLYSSGMTVAELLSLGELNFNLEKREVYLL-K 175

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
               R +    + ++  L++           N    +F       L     +R I +   
Sbjct: 176 NKISRTLYFSQTCKEVYLKFLIAKKEKFKEENNTNIIFVNNSNMRLTDRSVRRLINKYSE 235

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
              L    + +TLRHSF  ++L NG     +  +L    +    +Y N+  K 
Sbjct: 236 KANLQKEVSPYTLRHSFCIYMLKNGMPKEYLAKLLDLKSIGLLDVYENLCKKE 288


>gi|222094274|ref|YP_002528333.1| site-specific integrase/recombinase [Bacillus cereus Q1]
 gi|229042377|ref|ZP_04190125.1| Integrase/recombinase [Bacillus cereus AH676]
 gi|221238331|gb|ACM11041.1| site-specific integrase/recombinase [Bacillus cereus Q1]
 gi|228726924|gb|EEL78133.1| Integrase/recombinase [Bacillus cereus AH676]
          Length = 330

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 61/288 (21%), Positives = 124/288 (43%), Gaps = 14/288 (4%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA--FISKRRTQKIGDR 86
           R L   T++ Y  + + FL  L    E  ++I     ++   ++    +  +  + I   
Sbjct: 41  RNLRPFTIKYYLNELQAFLNLLTE-QEIDVSILKPYNMTEEHVKENVILYMKNYRGIKVV 99

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S+   L  +++F  +L K+K    + + N++ LK    +    +++Q      N L H  
Sbjct: 100 SINTRLRALRAFYNFLYKQKHIPRNPMENIKLLKDRKRIIPTFSKEQL-----NKLFHQP 154

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPS 205
           +   +   R+  I+ L+   G+RI+E + L+ ++I  + S L I+  K  + R VP+   
Sbjct: 155 NLRTFTGVRDYTIMMLMLETGIRINELVGLSVKDIRWEDSLLVIRNAKSYRERQVPIQKD 214

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-STTAHT 264
           ++  + +Y  +  +         LF  + G  L     Q+ I        +     + HT
Sbjct: 215 MKSQLKKYIAIRGYV----ESNALFVTVDGTRLTRRGIQQRISIYGNMAQIKDVRCSPHT 270

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            RH+FA   +  G ++  +Q+ILGH  +   + Y N+   +  +   E
Sbjct: 271 FRHTFAKLSVQQGANIFELQAILGHTNMEIVKTYVNLFGNDVRERHKE 318


>gi|330448031|ref|ZP_08311679.1| integron integrase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492222|dbj|GAA06176.1| integron integrase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 321

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/322 (23%), Positives = 128/322 (39%), Gaps = 64/322 (19%)

Query: 21  WLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++Q + +E      S  T ++Y    R F+ F          ++    +   EI  F++ 
Sbjct: 6   FMQKVRMELRTHQYSLRTEKNYMYWIRLFIRFN--------DLKHPEDMGNHEIERFLNH 57

Query: 78  RR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               +++   +  ++L  I    +Y+ +++I+     L   N K    LP  L+  +   
Sbjct: 58  LAVNRQVSVSTQNQALCAIIFLYRYVVRKEISN----LKYHNAKLPKRLPTVLSNNEVTA 113

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195
           + +N           +      I  +LYGCGLRI+EALSL  ++I  +  ++ I   KG 
Sbjct: 114 IFNN-----------LTGEYKLIAGILYGCGLRINEALSLRIKDINFESKSIFIFNSKGR 162

Query: 196 KIRIVPLLPSVRK------------------------------------AILEYYDLCPF 219
           K R   L  ++                                      A+        F
Sbjct: 163 KDRYTLLPNTIITPLKKQIEYVKRIHSDDLHHGYGTASVPTALYRKYQGALKLCGWQYIF 222

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
                   P    I    L+   F +++ +  +   +    TAHT RHSFAT LL NG D
Sbjct: 223 PSKHRCTHPYDGYICRHHLHVSAFSKHLHRAAKLSQIDKRVTAHTFRHSFATRLLENGTD 282

Query: 280 LRSIQSILGHFRLSTTQIYTNV 301
           +R++Q +LGH  + TT+IYT+V
Sbjct: 283 IRTVQELLGHTDIRTTEIYTHV 304


>gi|254513132|ref|ZP_05125198.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11]
 gi|221533131|gb|EEE36126.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11]
          Length = 236

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 101/231 (43%), Gaps = 20/231 (8%)

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +        ++ ++ F      R+         M+   +   LP  L+ ++   L+ 
Sbjct: 3   DAGVTPSVYTARITALRFFFSMTCGREEMK----RYMQFRTQPRKLPAVLSAEEVSELL- 57

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR 198
                          +  A L + YG GLR SE  +LT  +I  D+  + + QGKG K R
Sbjct: 58  -------AVAPGPGLKYRAALSISYGAGLRASEVCNLTAGDIDSDRVLIHVVQGKGRKDR 110

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLGLP 257
            V L P +   + +Y+           +  LF G  +  P++P    R     +R  G+ 
Sbjct: 111 KVMLSPDLLDLLRDYWCEA------RPEGWLFPGKPKINPISPRQLNRAFTSAKRMAGIN 164

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
              T HTLRHSFATHLL  G D+R IQ +LGH +L+TT  YT V +K   D
Sbjct: 165 KPATLHTLRHSFATHLLEAGTDVRVIQVLLGHAKLTTTAQYTKVATKMIRD 215


>gi|327490261|gb|EGF22049.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK1058]
          Length = 328

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 61/298 (20%), Positives = 121/298 (40%), Gaps = 25/298 (8%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  + ++    IE G S+ +L+ Y+      L  L           +IR L+ +++R ++
Sbjct: 52  KLLELFISAKRIE-GCSEKSLKYYKIVIENMLTSLK---------TSIRDLTTSDLRTYL 101

Query: 76  SKRRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++ + ++   + ++        SF  +L+      +S +  +  +K   ++    +++  
Sbjct: 102 ARYQQERKSSKVTIDNMRRIFSSFFGWLEDEDYILKSPVRRIHKIKTDKTIKETFSDEGL 161

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L D               R+ A++ LL   G+R+ E + L  ++I   +    + GKG
Sbjct: 162 ELLRDACDK----------IRDLAMIDLLASTGMRVGELVRLNREDINFYERECVVFGKG 211

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +  RIV      +  ++ Y D    D   N  L +        L  G  +  +RQL +  
Sbjct: 212 NSERIVYFDARTKIHLINYLDSRQDD---NPALFVSLSSPHDRLLIGGVETRLRQLGQKA 268

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            L      H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN  N  +   +
Sbjct: 269 DLNK-VHPHKFRRTLATRAIDKGMPIEQVQHLLGHVKIDTTMHYAMVNQANVKNSHRK 325


>gi|227461191|gb|ACP39542.1| putative integron integrase [uncultured microorganism]
          Length = 307

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 67/311 (21%), Positives = 118/311 (37%), Gaps = 60/311 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           R  +  T ++Y     +++ F   +          R+L    I AF++    +  +   +
Sbjct: 19  RHYALRTEEAYVDWIVRYIRFHRPHHS--------RELDAAAIAAFLTHLAVEGQVSAAT 70

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++ S +    + +    I T   +  +   +    LP  L+  +   ++         
Sbjct: 71  QNQARSALLFLYRAVLDIDIET---LQEIAPARMPKRLPAVLSRAEVRAVLRE------- 120

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
               +D     +  LLYG GLR+ E + L  ++I  +Q  L I+ GKG K R+  L   +
Sbjct: 121 ----LDGSYRLMGQLLYGSGLRLLECVRLRVKDISFEQHQLTIRDGKGAKDRVTMLPDQL 176

Query: 207 RKAI------------------------------------LEYYDLCPFDLNLNIQLPLF 230
            + +                                     E+     F        P  
Sbjct: 177 VEPLGEHLQRARRLHQDDLERGCGAVYLPTALERKYPNASAEWGWQYVFPAERLSVDPRS 236

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
              R   ++    Q+ +R+     G+    + HT RHSFATHLL NG D+R++Q +LGH 
Sbjct: 237 GVRRRHHVSESGLQKAVRRAVLASGVQKPASCHTFRHSFATHLLENGYDIRTVQELLGHA 296

Query: 291 RLSTTQIYTNV 301
            + TT IYT+V
Sbjct: 297 DVRTTMIYTHV 307


>gi|125973642|ref|YP_001037552.1| phage integrase [Clostridium thermocellum ATCC 27405]
 gi|125713867|gb|ABN52359.1| phage integrase [Clostridium thermocellum ATCC 27405]
          Length = 301

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 63/289 (21%), Positives = 128/289 (44%), Gaps = 20/289 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L E   +L  + I++  S  T+++Y    + F  +             I ++   ++R++
Sbjct: 14  LDEFSAYL--MSIDK--SDSTIKTYIEHIQAFAKWFEETNCIDFDPAVITEIDIRDMRSY 69

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK-KSNSLPRALNEKQ 133
           +  + T+ + + ++   L+ +K +  +L+  K    +   N+R +K +S ++ ++L+E+ 
Sbjct: 70  L--QGTRHLKETTINLRLASLKCYFSFLESEKYIKHNPARNIRKIKLQSPNIAKSLDEQT 127

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQ 191
              L         H  +  +  + A+  +   CG+R  E +++   +    D + TL+I 
Sbjct: 128 YRALRR-------HVYRGGNKAHIAMFEIFTRCGVRNFELINIRLTDFDISDRKGTLKIV 180

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GK +K+R +PL   VR AI  + ++            LF   R  P       +  ++  
Sbjct: 181 GKLNKVRYIPLHKDVRDAINNWMEIRKNI--KTEYDNLFISERKTPYTRSGIWKIFKKYC 238

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR-LSTTQIYT 299
             +G+    T H+ RH F   LL NG D+  +  + GH     T Q+YT
Sbjct: 239 EQIGIT-DVTIHSFRHYFCRTLLKNGVDISVVAKLAGHSSGFVTAQVYT 286


>gi|153000209|ref|YP_001365890.1| phage integrase family protein [Shewanella baltica OS185]
 gi|151364827|gb|ABS07827.1| phage integrase family protein [Shewanella baltica OS185]
          Length = 287

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 125/292 (42%), Gaps = 36/292 (12%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q +   + + RG S  T  +Y     Q   +           Q +  ++  ++ A+   
Sbjct: 5   LQQFHDEISL-RGYSARTRSAYLRAITQLQHYAN---------QPLDSITDEQLTAYFRY 54

Query: 78  RR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               +     +LK  L+GI  F +++  R        + +   K+ + LP+ L+ +    
Sbjct: 55  LNLERHHSRATLKLQLNGIHFFYEHVLGRDF-----TVQLSLPKRPHKLPQLLSCQDIAA 109

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195
           L+ +            + +  A+L L YGCGLR+SE   +   +I   +  L++ QGKG 
Sbjct: 110 LLCHC----------QNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGA 159

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG---KPLNPGVFQRYIRQLRR 252
             R+V + P++   + +Y+              LF         PL+   F++ + +  R
Sbjct: 160 YDRLVIISPTLLTLLRQYWRAYH------PVEWLFASTYHDVVYPLHESTFRKALAKAAR 213

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             G+    + H+LRH++ATH L  G  L  +Q+ LGH  + +T+ Y + + +
Sbjct: 214 LAGITKPCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPE 265


>gi|265753910|ref|ZP_06089265.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263235624|gb|EEZ21148.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 342

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/329 (22%), Positives = 138/329 (41%), Gaps = 21/329 (6%)

Query: 13  ELLKERQNWLQ-NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           ++     +WL+  +   +  S  T ++Y+   + ++ FL           +        I
Sbjct: 2   QIADYLHDWLEHYVPSIKACSPHTKRNYKISVKLYVEFLRVIKGTTPETLSAECFCMEYI 61

Query: 72  RAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL---NMRNLKKSNSLPR 127
             +I   +  +     +    LS ++ FLKYL  R I+  S  L   N+ N K S     
Sbjct: 62  MEWIIWLKENRGCSPATCNVRLSALRVFLKYLSFRDISYMSVFLQAENVPNEKNSKRKVI 121

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD--Q 185
            L+++       +VLL   ++   I  R+  ++ LLY   +RI+E L+L   NI+ D  +
Sbjct: 122 GLSKQAV-----DVLLSMPNQGSTIGFRDYTLMLLLYSTAVRINELLTLKISNIVIDCVK 176

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR---GKPLNPGV 242
             + + GKG K R +PLL    + +  Y        N +    LF         P++   
Sbjct: 177 PHIIVIGKGRKKRPIPLLAKPAQCLKRYLIKYHPKQN-DANALLFCSKSKGIYVPMSAEN 235

Query: 243 FQRYIRQLRRYLG-----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
             + +++           +P+   AH  RH+ A+H L NG ++  I  +LGH  + TT +
Sbjct: 236 VNKMLKKYATMAHERCQDVPMDLHAHQFRHAKASHWLENGMNIAQISYLLGHESIQTTMV 295

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
           Y ++ +K     +  +  +    + +K K
Sbjct: 296 YLDITTKQEEKALETLEGENQKKMRKKWK 324


>gi|82703905|ref|YP_413470.1| Phage integrase [Nitrosospira multiformis ATCC 25196]
 gi|82411970|gb|ABB76078.1| Phage integrase [Nitrosospira multiformis ATCC 25196]
          Length = 323

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 68/279 (24%), Positives = 118/279 (42%), Gaps = 28/279 (10%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T ++Y    + F+ F      ++      R ++   + A+  +   + +   +++  L+ 
Sbjct: 45  TRRAYNNALKDFMGFTDITRPDE-----FRSVTRAHVIAWRDELVKRSLSGTTIRHRLAA 99

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSN---SLPRALNEKQALTLVDNVLLHTSHETKW 151
           + S  +YL +R   T + +  ++     +     P AL + QA  L+D       H    
Sbjct: 100 LSSLFEYLCERNAVTHNPVKGVKRPPVESYEGKTP-ALGDHQARALLD-----APHSLSL 153

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGDKIRIVPLLPSVRK 208
              R+ A+L  L    LR  E   LT ++   ++     LR+ GKG K R +PL P+   
Sbjct: 154 KGKRDRALLATLLYHALRRDELCRLTVKDFRHERRGVRHLRVLGKGGKTRYIPLHPAAST 213

Query: 209 AILEYYDLCPFDLNLNIQLPLFR-------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            I EY +            PLF        G+  K L P    + +R+    LG      
Sbjct: 214 LITEYLEAAGH--GAEDSAPLFHPVSNNCAGVSSKALTPDGVYKLVREYSSNLG--FEIG 269

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            H+LR + AT+ L +  D+  +Q  LGH  +STT+IY +
Sbjct: 270 PHSLRATAATNALDHQADISKVQEWLGHANISTTRIYDH 308


>gi|37520018|ref|NP_923395.1| integrase/recombinase [Gloeobacter violaceus PCC 7421]
 gi|35211010|dbj|BAC88390.1| integrase/recombinase [Gloeobacter violaceus PCC 7421]
          Length = 282

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/310 (23%), Positives = 121/310 (39%), Gaps = 32/310 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             ++   LE ER L   T ++Y CD +Q+  +L                   ++R+++ +
Sbjct: 4   LDDFWDYLERERRLQPATCRAYRCDLKQWFGYLQTANP--------LAARPEQLRSYLVQ 55

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + IG  +L+R  S ++ F  YL ++ +        +         P  L  +Q   L
Sbjct: 56  LGERGIGHGTLRRKRSSLRVFYGYLHRQGVIAADPAAALPTETSRVPGPPPLRPQQLEAL 115

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +  V              + A++  LY  GLR +E  +   +N+  ++   R+       
Sbjct: 116 LGAV------GDDACGVCHRALILALYAGGLRSAEVSAANLENLDWERGLWRL-----PQ 164

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R V L P +  A+L+Y       L   I +  LF   RG  L+    Q Y+ +       
Sbjct: 165 RDVLLDPRLYAALLDYLRCGRPGLAAGIAERALFVSRRGHRLSVRALQAYLSRY------ 218

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               TA  LR+S+A HLL  G D   +Q++LG   L +TQ             +  +YD 
Sbjct: 219 --GVTAQQLRNSYAAHLLEGGTDPVDVQALLG---LRSTQA-AAGRQPTVAQGLRRVYDL 272

Query: 317 THPSITQKDK 326
            HP      K
Sbjct: 273 AHPRSGLHKK 282


>gi|78777937|ref|YP_394252.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
 gi|78498477|gb|ABB45017.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
          Length = 270

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 79/300 (26%), Positives = 142/300 (47%), Gaps = 38/300 (12%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+ LE  RG S LT++SY+    + L  + F  ++   +  +             + +
Sbjct: 2   EFLKYLEDIRGYSDLTIKSYDESITEALKSIEFVQDKNHILLNLMPY----------RIK 51

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +  +++ + LS I+SF  YL   +I+    +    ++K + +LP+ ++    + +++
Sbjct: 52  ISTLNPKTISKKLSAIRSFADYLNDNEISVM--LKGDDSIKVAKTLPKPISH---VNIIE 106

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            + L +  E          ++ L Y  GLRISE  SL  +N+ D+   +R+ GKG K R 
Sbjct: 107 AINLASLDE--------RVVVTLFYTLGLRISELASLELKNVSDE--WVRVIGKGSKQRD 156

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPLL   +K + EY    P    +  +        G+ L+    +  I ++ R +GL   
Sbjct: 157 VPLLEQSKKVLDEYLSKSPHKKFVFEK-------NGEKLSENSLRYIITKVFRRVGL--K 207

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            + H LRHSFA+ LL+    +  +  +LGH  ++TTQIYT +    G     + Y+  HP
Sbjct: 208 VSPHQLRHSFASQLLNGNAPIADVSELLGHSSMATTQIYTKL----GSALKQQNYNMAHP 263


>gi|148544647|ref|YP_001272017.1| phage integrase family protein [Lactobacillus reuteri DSM 20016]
 gi|184154000|ref|YP_001842341.1| integrase [Lactobacillus reuteri JCM 1112]
 gi|227365077|ref|ZP_03849107.1| phage integrase/recombinase [Lactobacillus reuteri MM2-3]
 gi|325682980|ref|ZP_08162496.1| phage integrase family integrase/recombinase [Lactobacillus reuteri
           MM4-1A]
 gi|148531681|gb|ABQ83680.1| phage integrase family protein [Lactobacillus reuteri DSM 20016]
 gi|183225344|dbj|BAG25861.1| integrase [Lactobacillus reuteri JCM 1112]
 gi|227069885|gb|EEI08278.1| phage integrase/recombinase [Lactobacillus reuteri MM2-3]
 gi|324977330|gb|EGC14281.1| phage integrase family integrase/recombinase [Lactobacillus reuteri
           MM4-1A]
          Length = 322

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 117/294 (39%), Gaps = 25/294 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI-SKR 78
            +L+  ++E G S  T++ Y     Q L         K  ++ +R+++  E+R ++   +
Sbjct: 50  KFLEAKKME-GCSDRTIKYYRVTVEQLL---------KKVVRPVRRITTEEMREYLVDYQ 99

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +    G  ++      I SF  +L++     +S +  +  ++    +   + ++    L 
Sbjct: 100 KINNCGKTTIDNIRRNISSFFSWLEEEDYILKSPMRRIHKIRAEKLVKNVITDEDIEKLR 159

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D               R+ AI+ LLY  G+R+ E + L   +I   +    + GKGDK R
Sbjct: 160 DGC----------SCLRDVAIIDLLYSTGIRVGELVRLNRTDINFSERECVVFGKGDKER 209

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            V      +  ++ Y      D   N  L +        L     +  +RQL R L L  
Sbjct: 210 RVYFDAKSKVHLINYLRSRNDD---NPALFVSLDKPNDRLKISGVEIRLRQLGRKLHLDR 266

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
               H  R S AT  +  G  +  +Q ILGH ++ TT  Y  VN  N      +
Sbjct: 267 -IHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVNQNNVKAAHRK 319


>gi|224370500|ref|YP_002604664.1| Phage integrase/recombinase family protein [Desulfobacterium
           autotrophicum HRM2]
 gi|223693217|gb|ACN16500.1| Phage integrase/recombinase family protein [Desulfobacterium
           autotrophicum HRM2]
          Length = 301

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 62/284 (21%), Positives = 119/284 (41%), Gaps = 23/284 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  ++ +Y+   R FL FL   + E+     +R +++  + AF    + Q    R++   
Sbjct: 19  SDNSVDTYDRAIRTFLDFLGISSPEE-----LRTITHGHVIAFKKFLQDQGRSARTINNR 73

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD---NVLLHTSHE 148
           LS I S   +L  +++   +    +        +P   +  +A  L       LL++   
Sbjct: 74  LSAISSLFNHLIDQQVVKINVAQGV------KRMPVNASRVEAKVLAPVEVRNLLNSPDV 127

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSV 206
           +K    R+ AIL  L+  G R+SE  SL  ++  ++Q    L    KG K   + +   +
Sbjct: 128 SKLQGLRDKAILSTLFFTGCRVSEVCSLKVRDFYEEQGFFVLDFWVKGGKRNRMAINQEL 187

Query: 207 RKAILEYYDLCPF--DLNLNIQLPLFRGIR----GKPLNPGVFQRYIRQLRRYLGLPLST 260
           +  + +Y        D    + LP+  G +     + L+         +    +G+    
Sbjct: 188 QITLDQYLTETGHGPDQASFLFLPVKSGYKALDPKRKLSRRTIDHLFNKYANTIGIA-GI 246

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           T H+ R +F T  L N   + ++Q  +GH ++ TTQ+Y    +K
Sbjct: 247 TPHSARATFITQALENNCPIEAVQKTVGHAQIKTTQMYDKRTAK 290


>gi|258515633|ref|YP_003191855.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257779338|gb|ACV63232.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 323

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 61/298 (20%), Positives = 120/298 (40%), Gaps = 20/298 (6%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ TL  +  +   F  FL            I  +S   +  ++   +       ++   
Sbjct: 41  SQRTLNYHLENLTAFKKFLTTQ------AVNISLISAKTLDEYVKSMKNADKKKNTINGR 94

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           +  ++ F + L +++   ++  L ++ ++         +++Q   L+          T +
Sbjct: 95  VKTLRVFFRILNEKEYIPDNPALGLKTIRGPKPEIFPFSDEQINALL-----AQPDRTTF 149

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAI 210
              R+  I+ +L   G+R+ E  ++   ++      + ++ GKG+K R V      R+ I
Sbjct: 150 AGLRDYMIMQILLDTGVRLEELCNIKYSDVNLKTCRILVRKGKGNKSRTVLFGSETRRTI 209

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSF 269
           ++Y  +     +L+ +  L     G PL     Q  I       GL  +  + HT RH+F
Sbjct: 210 MKYLKVTG---DLDAETNLILNQDGNPLKQRSVQDRISLHASAAGLKGVRPSPHTFRHTF 266

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
           A   L NGGD   ++ +LGH  +ST  IY  +      D + + Y    P  +   KK
Sbjct: 267 AKKFLMNGGDPYVLRDLLGHNSMSTVIIYLRL----FSDDLAKKYQGKSPVDSILRKK 320


>gi|325983789|ref|YP_004296190.1| integrase family protein [Nitrosomonas sp. AL212]
 gi|325533308|gb|ADZ28028.1| integrase family protein [Nitrosomonas sp. AL212]
          Length = 316

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 69/281 (24%), Positives = 119/281 (42%), Gaps = 28/281 (9%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           K T ++YE   + F+ F      E+      R ++   I A+      + +   S++  L
Sbjct: 36  KATRRAYENALKDFMNFTGIQNPEE-----FRVVTRAHIIAWRDDLVNRSLSSMSIRHRL 90

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSN---SLPRALNEKQALTLVDNVLLHTSHET 149
           S + S  +YL +R   T + +  ++     +     P A+ + QA  L++         +
Sbjct: 91  SALSSLFEYLCERNTVTHNPVKGVKRPAVESYEGKTP-AIGDHQARELLE-----VPDGS 144

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGDKIRIVPLLPSV 206
                R+ AIL  L    LR  E   L  ++   ++     ++I GKG K R VPL P+ 
Sbjct: 145 SLKGKRDRAILATLLYHALRRDELCRLKVKDFKQERRGVPHIKISGKGGKTRYVPLHPAA 204

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGK-------PLNPGVFQRYIRQLRRYLGLPLS 259
              I +Y D    D        LFR +          P+ P    + +++    LG    
Sbjct: 205 SGLIHDYLDAAGHD--HEETGALFRSVSNNRIKESQKPITPDGVYKLVQKYSEKLG--FK 260

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             AH+LR + AT+ L +  D+  +Q  LGH  ++TT+IY +
Sbjct: 261 IGAHSLRATAATNALDHQADIAKVQEWLGHANIATTRIYDH 301


>gi|294785359|ref|ZP_06750647.1| integrase/recombinase [Fusobacterium sp. 3_1_27]
 gi|294487073|gb|EFG34435.1| integrase/recombinase [Fusobacterium sp. 3_1_27]
          Length = 290

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 62/293 (21%), Positives = 115/293 (39%), Gaps = 12/293 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + K  ++++  LE E      T+ S   D   FL +L      K  I T+ +L    IR 
Sbjct: 7   IEKAVKDFIYYLEFEENKKNNTVISIRKDLNNFLEYL-----NKKNITTLDKLDELIIRE 61

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++++ +   + + +  R LS IK F KYL    +  +   + +   K      + LN  +
Sbjct: 62  YLTELKDFDLSNSTYNRRLSSIKKFYKYLINNNLKEKGKEILIEGKKSDEKKIQYLNSDE 121

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L + +      E  +   R+  +  LLY  G+ ++E LSL   N   ++  + +  K
Sbjct: 122 IKILREEM-----KEESFNVLRDKLMFELLYSSGMTVAELLSLGELNFNLEKREVYLL-K 175

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
               R +    + ++  L++           N    +F       L     +R I +   
Sbjct: 176 NKISRTLYFSQTCKEVYLKFLIAKKEKFKEENNTNIIFVNNSNMRLTDRSVRRLINKYSE 235

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
              L    + +TLRHSF  ++L NG     +  +L    +    +Y N+  K 
Sbjct: 236 KANLQKEVSPYTLRHSFCIYMLKNGMPKEYLAKLLDLKSIGLLDVYENLCKKE 288


>gi|332306644|ref|YP_004434495.1| integron integrase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332173973|gb|AEE23227.1| integron integrase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 321

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/331 (22%), Positives = 134/331 (40%), Gaps = 68/331 (20%)

Query: 21  WLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +L  ++ E      SK ++++Y      ++ F        +  +        E+ AF+S 
Sbjct: 6   FLNMIKDEMYQLRYSKRSIEAYLKWISSYIHFHQKKHPNLMHDK--------EVEAFLSH 57

Query: 78  RRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQA 134
              +  +   + K +L+ +    +      I  +     +  +K  +   LP  L   + 
Sbjct: 58  LVLELDVAASTQKSALNALVFLYR-----DIIRQPLNFKLSFIKSTRQQKLPIVLTTDEV 112

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGK 193
             L+             ++A+N   + +LY  GLR+ E + L  Q+I  D  ++R+  GK
Sbjct: 113 RNLL-----------AVVNAQNKLAVSILYASGLRLMECMRLRVQDIDFDFKSIRVWHGK 161

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-------------------- 233
           G K R+V L   +   + +   +    L+ ++  P + G+                    
Sbjct: 162 GGKHRVVTLADELIPTLQQQITVVKQYLDADLLNPEYSGVYLPHRLRLKFKNANRSIQWQ 221

Query: 234 -----------------RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
                            R   ++    Q+ IR   +   +P + T HTLRHSFATHLL +
Sbjct: 222 YVFASRQLSKDPEDQSLRRHHIDGSTVQKAIRHAAKKASIPKTVTPHTLRHSFATHLLQS 281

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           G D+R++Q  LGH  L TTQIYT++  + G 
Sbjct: 282 GADIRTVQDQLGHSDLRTTQIYTHILQRGGN 312


>gi|152975083|ref|YP_001374600.1| phage integrase family protein [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152023835|gb|ABS21605.1| phage integrase family protein [Bacillus cytotoxicus NVH 391-98]
          Length = 304

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/305 (20%), Positives = 130/305 (42%), Gaps = 14/305 (4%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             Q +L + E+ R LSK TL+SY+   ++F  F          I    +++    + F+ 
Sbjct: 6   AMQEFLDDREL-RNLSKHTLKSYKGILKRFESFCVNK-----GIFDTDKVTSKVAKEFLI 59

Query: 77  KRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
             + + K    ++      +K + KYL++  I  E+    ++  K  +++   L ++Q  
Sbjct: 60  YCKHELKNSISTINEKNRTLKVYFKYLEEEGIVEENPFKKIKFSK-EDTITDVLTDEQVK 118

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +++++        T +   RN  ++ LL   GLR  E ++L   +I     T+   GK  
Sbjct: 119 SVLEHFDRGHYKGTNFALMRNRMVIVLLISTGLRREELVNLKWSDIDMRNRTIMTYGKKR 178

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            +  +P    ++K + EY     F      + + +F     + L         ++L++ L
Sbjct: 179 TVATIPYTRKLQKELAEYKTFLEFYFEEEKEVVYVFPDKWNRQLTTEAISTLFKRLKKNL 238

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            +    T H  R  FA+  L  G D  ++Q ++ H  L  T+ Y  +     G  + ++ 
Sbjct: 239 NME-GLTCHAFRRYFASKCLKMGMDSLNLQKLMRHETLQMTERYVKL----YGHALHDVN 293

Query: 315 DQTHP 319
           D+ +P
Sbjct: 294 DKYNP 298


>gi|120403139|ref|YP_952968.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119955957|gb|ABM12962.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 367

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 73/354 (20%), Positives = 135/354 (38%), Gaps = 73/354 (20%)

Query: 12  FELLKERQNWLQNL-EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           F +++    +L +L  IER  S  T+++Y  D R +  FLA +          R +    
Sbjct: 23  FAVVEPADVFLAHLTAIER--SPGTVRAYAFDLRDYFEFLAAHGI------DWRAVRLEH 74

Query: 71  IRAFISKRR----------------TQKIGDRSLKRSLSGIKSFLKYLKKRKI------- 107
           +  F+   R                  +    ++ R L+ + SF K+  +  +       
Sbjct: 75  LGRFVGWLRLPPTQRTASVTSLSTMEAQCSASTINRKLAAVGSFYKFYHRHGVGCGELLS 134

Query: 108 -------------------TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
                              +          LK    LPR L E+    +V+         
Sbjct: 135 TMKAGGARGSWRPFLAHLGSAGDQHRRTIKLKTRRRLPRTLPEESVQLIVNACDR----- 189

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK--------GDKIRIV 200
                 R+  ++ LL G G+RI EAL L  ++I    + +RI+ +            R +
Sbjct: 190 -----LRDRFLIELLAGTGMRIGEALGLRHEDIDAAGTLIRIRARRNSNGARVKGGQREI 244

Query: 201 PLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+  S+ +   +Y      +L+ + + + L+ G  G PL        + +LR   G+  +
Sbjct: 245 PVAASLIRLYTDYLVDEYGELDCDYVFVNLWGGSVGTPLRYWNVTDLVSRLRARSGVEFT 304

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMME 312
              H LRH++AT LL  G     +Q +LGH  ++TT   Y ++  ++    + +
Sbjct: 305 V--HMLRHTYATDLLRRGVPAEVVQKLLGHASVTTTASTYAHLEVEDLRRVLRD 356


>gi|309811471|ref|ZP_07705253.1| phage integrase, N-terminal SAM domain protein [Dermacoccus sp.
           Ellin185]
 gi|308434522|gb|EFP58372.1| phage integrase, N-terminal SAM domain protein [Dermacoccus sp.
           Ellin185]
          Length = 352

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 58/178 (32%), Positives = 97/178 (54%), Gaps = 5/178 (2%)

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
               E + + AR++A+L LLY  G+R+ E  SL    + +    +R+ GKG K R+VP  
Sbjct: 180 AAGPEERAVRARDAAVLELLYASGMRVGELASLDVSALDEANQLVRVMGKGRKERMVPYG 239

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              R+A+  +   C   L  + +  LF G+RG+ ++  + +  + +    +    + + H
Sbjct: 240 LPAREALERWL-RCRGALAADGERALFVGVRGRRIDQRIVRELVNRATASVDGAPTLSPH 298

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            LRHS ATHL+  G DLR++Q  LGH  L+TTQIYT+V+++     +   ++Q HP  
Sbjct: 299 ALRHSAATHLVEGGADLRTVQEYLGHASLATTQIYTHVSAER----LRAGFEQAHPRA 352



 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 51/112 (45%), Gaps = 5/112 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L +L  ER  S  T+++Y  D     + L         + +   L+  ++R++++ 
Sbjct: 2   IEQFLDHLSAERDRSTNTVRAYSVDLASLRLHLT-----GADVASWSDLTLNDLRSWLAA 56

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +        +L R +S +K+F ++ ++R +      + +   ++  SLP  L
Sbjct: 57  QSEAGNSRSTLARRVSAVKTFCRWARRRGVIATDPSVRLSAPRRMTSLPEVL 108


>gi|297624037|ref|YP_003705471.1| integrase family protein [Truepera radiovictrix DSM 17093]
 gi|297165217|gb|ADI14928.1| integrase family protein [Truepera radiovictrix DSM 17093]
          Length = 292

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 58/292 (19%), Positives = 121/292 (41%), Gaps = 22/292 (7%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GL+  +L+ +E   + F  +L   +            + T IR ++   ++  +   ++ 
Sbjct: 16  GLTTRSLEWHETSLKSFTRWLEACSHS----AEPETWNPTLIREYVVYLQSSGLSGWTVT 71

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             +  + +F ++L + + T ++    +R  K   +  +   + +   L+         + 
Sbjct: 72  NKVQSLLAFTRWLHEEEFTEKNVAERVRKPKPPQTQRQPFTDAELRRLL---------KA 122

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
                R++AI+ LL    +R SE  +L   + + DQ  +++ GKG+K R+VP  P   K 
Sbjct: 123 SQSSIRDAAIVALLLDTAIRASELCTLKLSDCLLDQCLIKVMGKGNKERVVPHSPQTGKL 182

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           + ++          +    +F   R +   P    + I ++     +      H LRHS 
Sbjct: 183 VSKWLLKG----RASEGPYVFHTERSERFTPRSLHKLIERIGNRAAVD-DCYPHRLRHSA 237

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           A  +L NG D  ++Q +LGH  L+ T  Y  +N+ +    +   +    P  
Sbjct: 238 AITMLRNGMDPLTLQRMLGHTSLNMTMRYVALNTTD----LQNAHAVASPLA 285


>gi|183981455|ref|YP_001849746.1| site-specific integrase [Mycobacterium marinum M]
 gi|183174781|gb|ACC39891.1| site-specific integrase [Mycobacterium marinum M]
          Length = 359

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/352 (21%), Positives = 134/352 (38%), Gaps = 68/352 (19%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            + E       +L  L  +R  S  T ++Y  D   F  +L    +E++    + +++  
Sbjct: 20  TAAEQFGLVNEFLGYLA-DRNFSPRTCRAYAYDLLAFARWLR---DEQLG---VAEVNVD 72

Query: 70  EIRAFISKRRT-------------------QKIGDRSLKRSLSGIKSFLKYLKKRK---- 106
            +  F++  R                    Q     ++ R L+ I S   + + R     
Sbjct: 73  VLLRFLTACREATLPGRPGGNVYSIRDGRNQGYAPATINRRLAAISSLFAFREMRDPDAR 132

Query: 107 -ITTESNILNMRN---------------------LKKSNSLPRALNEKQALTLVDNVLLH 144
            +   S    +R+                     +++   LPR L+ +++  L+      
Sbjct: 133 SLVGSSRAARLRSRGERSGLLAHTAKPKSRSQLRVREPRWLPRGLSREESAALL------ 186

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
                 +   R+ AI  L+   GLR +E L L   +I   +  +R+ GKG K R VP+  
Sbjct: 187 ----GSFRSWRDRAIGGLMLLSGLRSAEVLGLRVSDIDIARRWVRVLGKGGKERSVPIDT 242

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
            V  AI  Y      + + +    + +G  RG+PL     +   R  R   G+      H
Sbjct: 243 DVAGAIQTYLLAERPETDADELFVVAKGAHRGRPLTAAGLRTVFRYHRERSGVAAG-HPH 301

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            LRHSF T L   G DL  IQ+++GH  + +   Y ++       ++ E +D
Sbjct: 302 ALRHSFGTALAEAGVDLSVIQALMGHDHVDSAAAYIHL----APTFLREEFD 349


>gi|168208010|ref|ZP_02634015.1| putative integrase/recombinase [Clostridium perfringens E str.
           JGS1987]
 gi|170660693|gb|EDT13376.1| putative integrase/recombinase [Clostridium perfringens E str.
           JGS1987]
          Length = 284

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 79/308 (25%), Positives = 137/308 (44%), Gaps = 35/308 (11%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE--- 70
           +  E   +L N+E   GLS+ TL+ YE D   F  ++    E K  I+++  ++  E   
Sbjct: 1   MKDEILKFL-NIESNNGLSEGTLKKYEIDLNLFFEYM----EHKQNIKSLNSVTGEEGQK 55

Query: 71  -IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPR 127
            I  +I+  + +     ++   +  I  FLKYL              + +K  N   +  
Sbjct: 56  IIDRYINYLKREGYKPSTINGKIVSINKFLKYLGHE--------FKAKAIKVQNKMYIEN 107

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            ++E++   L+     +          R+  I+  L   GLRISE LSLT  +    + +
Sbjct: 108 IISEREFERLIRACKDNK---------RDYTIIMTLANTGLRISELLSLTINDP--KKES 156

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           + I GKG K R + L P ++K + +Y D      +  +   LF G RG  L      + +
Sbjct: 157 IYIYGKGGKGRELILSPQLKKILNDYIDNYRMKTHKRL---LFTGERG-ALKRNAINKML 212

Query: 248 RQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
            + ++  G+       H+ RH +A +L+S G  L  IQ++LGH  ++TT IYT  + K  
Sbjct: 213 LKYQKKTGISKEKMHPHSFRHFYAKYLISKGIGLDIIQTLLGHENINTTSIYTKSSKKEL 272

Query: 307 GDWMMEIY 314
              +   +
Sbjct: 273 VSIINRTF 280


>gi|116629555|ref|YP_814727.1| integrase [Lactobacillus gasseri ATCC 33323]
 gi|238854086|ref|ZP_04644435.1| integrase [Lactobacillus gasseri 202-4]
 gi|116095137|gb|ABJ60289.1| Integrase [Lactobacillus gasseri ATCC 33323]
 gi|238833293|gb|EEQ25581.1| integrase [Lactobacillus gasseri 202-4]
          Length = 322

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 118/294 (40%), Gaps = 25/294 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI-SKR 78
            +L+  ++E G S  T++ Y+    Q L  +         I+ IR+++  E+R ++   +
Sbjct: 50  KFLEAKKME-GCSDRTIKYYKVTVEQLLAKV---------IRPIRRITTEEMREYLVEYQ 99

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +    G  ++      I SF  +L++     +S +  +  ++    +   + ++    L 
Sbjct: 100 KINNCGKTTIDNIRRNISSFFSWLEEEDYILKSPMRRIHKIRAEKLVKNVITDEDIEKLR 159

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D               R+ A++ LLY  G+R+ E + L   +I   +    + GKGDK R
Sbjct: 160 DGC----------SCLRDVAMIDLLYSTGIRVGELVRLNRNDINFSERECVVFGKGDKER 209

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            V      +  ++ Y      D   N  L +        L     +  +RQL R L L  
Sbjct: 210 RVYFDAKSKVHLINYLRSREDD---NPALFVSLDKPNDRLKISGVEIRLRQLGRKLHLDR 266

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
               H  R S AT  +  G  +  +Q ILGH ++ TT  Y  VN  N      +
Sbjct: 267 -IHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVNQNNVKAAHRK 319


>gi|19704406|ref|NP_603968.1| integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|19714664|gb|AAL95267.1| Integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 290

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 61/286 (21%), Positives = 113/286 (39%), Gaps = 12/286 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + K  ++++  LE E      T+ S   D   FL +L      K  I T+ +L    IR 
Sbjct: 7   IEKAVKDFIYYLEFEENKKNNTVISIRKDLNNFLEYL-----NKKNITTLDKLDELIIRE 61

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++++ +   + + +  R LS IK F KYL    +  +   + +   K      + LN  +
Sbjct: 62  YLTELKDFDLSNSTYNRRLSSIKKFYKYLINNNLKEKGKEILIEGKKSDEKKIQYLNSDE 121

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L + +      E  +   R+  +  LLY  G+ ++E LSL   N   ++  + +  K
Sbjct: 122 IKILREEM-----KEESFNILRDRLMFELLYSSGMTVAELLSLGELNFNLEKREVYLL-K 175

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
               R +    + ++  L++  +        N    +F       L     +R I +   
Sbjct: 176 NKISRTLYFSQTCKEVYLKFLIVKKEKFKEENNTNIIFVNNSNMRLTDRSVRRLINKYSE 235

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              L    + +TLRHSF  ++L NG     +  +L    +    IY
Sbjct: 236 KANLQKEVSPYTLRHSFCLYMLRNGMSKEYLAKLLDLKSIGLLDIY 281


>gi|153939017|ref|YP_001391193.1| phage integrase family site specific recombinase [Clostridium
           botulinum F str. Langeland]
 gi|152934913|gb|ABS40411.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum F str. Langeland]
 gi|295319232|gb|ADF99609.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum F str. 230613]
          Length = 330

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/336 (19%), Positives = 134/336 (39%), Gaps = 47/336 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              ++   E  + LSK T+ SYE   R F  +L    EE+  I  +++++   IR +I+ 
Sbjct: 8   IDEFMIYCES-KNLSKKTMMSYEQTLRLFTKYL----EEEKGIGDVKKVTEKMIREYINY 62

Query: 78  RRTQK-------------------------IGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
            + +                          +   ++   +  IK F  +L ++    +  
Sbjct: 63  TKNRGKYTIVGDKETLKTNTPEMRKDYGKKVSITTINNYIRNIKVFFNFLLEQSYIKKDV 122

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           + N++  K        + + Q   L+ ++       TK+ + R+   + +L   G+RI E
Sbjct: 123 VKNIKQFKNQRKAKEFITDSQFAELLRHI-----DTTKFHERRDHLCIMMLLDTGMRIGE 177

Query: 173 ALSLTPQNIMDDQSTLR---IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
            L +  +NI  +  ++    +  KG + R V     ++K +  +       +  +    L
Sbjct: 178 CLEIKVENIDMNYRSILLPAVDTKGKRDRYVYFSQVMQKELRRWLQYKDRYVESD---YL 234

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F   +G P+    F+R ++      GL      H LR++FA   L +GG +  +  +LGH
Sbjct: 235 FCTTKGTPVLIRTFERKLKDYANRAGL-KDIHPHQLRNNFAKRFLMSGGSIYILSQVLGH 293

Query: 290 FRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
             +  T Q Y ++   +    + + Y Q  P    K
Sbjct: 294 SSVKVTEQAYLDLTDAD----IRKNYQQFSPLANMK 325


>gi|154492484|ref|ZP_02032110.1| hypothetical protein PARMER_02118 [Parabacteroides merdae ATCC
           43184]
 gi|254881869|ref|ZP_05254579.1| phage integrase [Bacteroides sp. 4_3_47FAA]
 gi|154087709|gb|EDN86754.1| hypothetical protein PARMER_02118 [Parabacteroides merdae ATCC
           43184]
 gi|254834662|gb|EET14971.1| phage integrase [Bacteroides sp. 4_3_47FAA]
          Length = 330

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 59/293 (20%), Positives = 119/293 (40%), Gaps = 25/293 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS-KRR 79
           +L   ++E G +  T++ Y    RQ    +          + +   +  +IRA+++  +R
Sbjct: 59  FLSAKQVE-GCTTPTIKYYGSTIRQLFKKM---------PKKVTDYTTEDIRAYLAVFQR 108

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
             K    ++        SF  +L++     +S +  +  +K    +   L+++    L D
Sbjct: 109 KNKSSRVTIDNIRRIFSSFFAWLEEEDYIIKSPVRRIHKVKTGTQVKEVLSDENIEQLRD 168

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           +            + R+ AI+ +L   G+R+ E + L  ++I  ++    + GKG+K RI
Sbjct: 169 SC----------TEIRDLAIIDILASTGMRVGELVKLNREDINFNERECIVFGKGNKERI 218

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           V      +  + +Y        + N  L +      K L     +  +R+L R   + + 
Sbjct: 219 VYFNARAKIHLQQYLASR---KDRNKALFVSLAKPHKRLGISGVETRLRKLGRSAKI-VR 274

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN  N      +
Sbjct: 275 VHPHKFRRTLATMAIDKGMPVEQVQRLLGHVKIDTTMHYAMVNQSNVKLSHRK 327


>gi|126661477|ref|ZP_01732531.1| tyrosine recombinase xerC [Cyanothece sp. CCY0110]
 gi|126617235|gb|EAZ88050.1| tyrosine recombinase xerC [Cyanothece sp. CCY0110]
          Length = 285

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 120/297 (40%), Gaps = 32/297 (10%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +P   S    +  ++WL     ++  S  T Q Y    +QF  F         + + +  
Sbjct: 1   MPITRSTSDPEIIRSWL----FDKN-SNHTRQLYNNTLKQFQSF---------SSEPLSN 46

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +   +I+ +I   + +     +++  +  +KS   Y         +    ++  K   +L
Sbjct: 47  VKIEDIQLWIDSLKLRGYSLHTIRVKVLCLKSLFSYCFDVGYLPFNVAARVKPPKPKETL 106

Query: 126 P-RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IM 182
             R LN      L+     H          R+  +L L+Y CGLRISEA  LT Q+    
Sbjct: 107 SQRLLNVADIEKLIRATKTH----------RDFLMLSLIYACGLRISEASRLTWQDLQPR 156

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
            D     I GKG + R+V +   +   +     +    L       +F   R K L    
Sbjct: 157 KDGGQALIDGKGGQSRVVLIPVGLWAKL-----MAFQSLRSPHTDAVFYSRRQKELARSR 211

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
             + ++Q     G+   T+AH LRH+ ATH L NG D+  +Q  LGH  ++TTQ Y 
Sbjct: 212 IHQIVKQAALDAGINPKTSAHWLRHAHATHSLENGCDISLLQQSLGHSDITTTQRYL 268


>gi|205320825|gb|ACI02940.1| TnpF [uncultured bacterium HH1107]
          Length = 221

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 106/226 (46%), Gaps = 21/226 (9%)

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +K+      ++++ IK + +    R +  +     +   KK  +LP  ++E++ + ++ 
Sbjct: 2   ERKVSISYQNQAINAIKFYYE----RVLGGQRKTYFIERPKKEKTLPVVMSEEETIRVLR 57

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR 198
            +           + ++ AIL  +Y  GLRISE ++L  ++I   +  +RI Q KG + R
Sbjct: 58  AIE----------NVKHKAILMTIYSAGLRISECINLKIKDIDSKRMQIRIEQSKGKRDR 107

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
              L       +  Y+           +  LF G +G   +    Q   +       +  
Sbjct: 108 YTILSEKTLIILRTYFM------EYKPKDYLFEGQKGGAYSSRSIQNIFKAAVLKAKIQK 161

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             T HTLRHSFATHLL NG  LR IQS+LGH    TT++YT++ +K
Sbjct: 162 EVTVHTLRHSFATHLLENGTSLRYIQSLLGHSSSKTTEVYTHITTK 207


>gi|319644364|ref|ZP_07998837.1| hypothetical protein HMPREF9011_04440 [Bacteroides sp. 3_1_40A]
 gi|317384161|gb|EFV65135.1| hypothetical protein HMPREF9011_04440 [Bacteroides sp. 3_1_40A]
          Length = 346

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 79/320 (24%), Positives = 128/320 (40%), Gaps = 24/320 (7%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QK 82
            L   R LS   L+SY      ++ FL                    I  +I+  +  +K
Sbjct: 21  YLPCIRNLSHNALKSYGEGMGIYIDFLESSKGVTSNTLCGECFRKDWIEEWIAWLKEVRK 80

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKI------TTESNILNMRNLKKSNSLPRALNEKQALT 136
              ++    LS +K+FL++L  +KI         + I  M+  KK   +      K+   
Sbjct: 81  CSPQTCNHRLSILKNFLRFLAHKKIQFIKYDCDAAEIKRMQQPKKQVEVITKYTIKRIFA 140

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ--STLRIQGKG 194
            ++   L        I  R+ A+  LLY  G RI E LSL    +  D+    + + GKG
Sbjct: 141 SINTRTL--------IGKRDFALFNLLYSTGTRIDEILSLRLSALHLDETKGYILVLGKG 192

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR--GIRGKPLNPGVFQRYIRQLRR 252
           +K R + LL S+ + +  Y  L      L      F   G   K +      + ++   R
Sbjct: 193 NKQRTIYLLNSMVRILRHYVKLFHPANPLPSDFVFFPIYGHANKKITSEAISKRLKMYVR 252

Query: 253 YLG-----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                   +P+    H+ RH+ ATH L +G +L  IQ +LGH  + TT  Y  V+S+   
Sbjct: 253 IASQGLLEIPVDFHCHSFRHARATHWLEDGVNLAQIQKLLGHESIETTMKYVGVSSEQMI 312

Query: 308 DWMMEIYDQTHPSITQKDKK 327
             +  + D     + +K KK
Sbjct: 313 QALCSMEDNLTLGVEKKYKK 332


>gi|327470621|gb|EGF16077.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK330]
          Length = 328

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 61/298 (20%), Positives = 122/298 (40%), Gaps = 25/298 (8%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  + ++    IE G S+ +L+ Y+       + L           +IR L+ +++R ++
Sbjct: 52  KLLELFISAKRIE-GCSEKSLKYYKMVIENMFVSLK---------TSIRDLTTSDLRTYL 101

Query: 76  SKRRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++ + ++   + ++        SF  +L+      +S +  +  +K   ++   L+++  
Sbjct: 102 ARYQQERKSSKVTIDNMRRIFSSFFGWLEDEDYILKSPVRRIHKIKTDKTIKETLSDEGL 161

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L D               R+ A++ LL   G+R+ E + L  ++I   +    + GKG
Sbjct: 162 ELLRDACDK----------IRDLAMIDLLTSTGMRVGELVRLNREDINFYERECVVFGKG 211

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +  RIV      +  ++ Y D    D   N  L +        L  G  +  +RQL +  
Sbjct: 212 NSERIVYFDARTKIHLINYLDSRQDD---NPALFVSLSSPHDRLLIGGVETRLRQLGQKA 268

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            L      H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN  N  +   +
Sbjct: 269 DLNK-VHPHKFRRTLATRAIDKGMPIEQVQHLLGHVKIDTTMHYAMVNQANVKNSHRK 325


>gi|210611276|ref|ZP_03288831.1| hypothetical protein CLONEX_01021 [Clostridium nexile DSM 1787]
 gi|210152040|gb|EEA83047.1| hypothetical protein CLONEX_01021 [Clostridium nexile DSM 1787]
          Length = 327

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 59/298 (19%), Positives = 120/298 (40%), Gaps = 25/298 (8%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
              + ++    IE G S+ TL+ Y       L  +          +   Q++  ++R ++
Sbjct: 51  DAVEAFITAKRIE-GCSEKTLRYYRKTIESMLSAIG---------KKASQVTTEDLRKYL 100

Query: 76  SKRRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +  +TQ+   + ++      + SF  +L+      +S +  +  +K +  +     ++  
Sbjct: 101 TTYQTQRKSSKVTIDNIRRILSSFFSWLEDEDFILKSPVRRIHKVKTAKLVKDTYTDEAL 160

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             + DN              R+ AI+ LL   G+R+ E + L  ++I  ++    + GKG
Sbjct: 161 ELMRDNC----------TTTRDLAIIDLLASSGMRVGEMVMLNREDIDFNERECVVIGKG 210

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +K R+V      +  +  Y +      + N  L +        L  G  +  +R+L + L
Sbjct: 211 NKERLVYFDARTKIHLQNYLNERT---DTNPALFVSLNPPHDRLMIGGVETRLRELGKRL 267

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            LP     H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V  +N      +
Sbjct: 268 NLPK-VHPHKFRRTLATSAIDKGMPIEQVQQLLGHQKIDTTMHYAMVKQQNVKLAHRK 324


>gi|218263889|ref|ZP_03477845.1| hypothetical protein PRABACTJOHN_03535 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222439|gb|EEC95089.1| hypothetical protein PRABACTJOHN_03535 [Parabacteroides johnsonii
           DSM 18315]
          Length = 327

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 57/296 (19%), Positives = 111/296 (37%), Gaps = 25/296 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI-S 76
             ++L    +E G S  ++  Y       +  +          + IR ++  ++R ++  
Sbjct: 53  IDSFLSAKRVE-GCSDKSIHYYRSTLNNAIRKIG---------KNIRHITTDDLRNYLND 102

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            ++T      ++      + SF  +L+      +S +  +  +K   ++    +++    
Sbjct: 103 YQQTSGATKVTVDNIRRILSSFFSWLEDEDYIVKSPVRRIHKVKVGKTVKETYSDEALEQ 162

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           + D+              R+ A++ LL   G+R+ E + L   +I  +     + GKGDK
Sbjct: 163 MRDHCE----------GIRDLALIDLLASTGMRVGELVKLNRNDIDFENRECIVTGKGDK 212

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R V      +  +  Y      D   N  L +        L     +  +R+L R L +
Sbjct: 213 QRRVYFDARAKIHLQRYLAERIDD---NPALFVSLLAPYDRLQISGVEIRLRRLGRELNI 269

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           P     H  R + AT  +  G  +  +Q +LGH  L TT  Y  VN  N      +
Sbjct: 270 PK-VHPHKFRRTLATMAIDKGMPIEQVQHLLGHQSLDTTLQYAMVNQTNVKMSHRK 324


>gi|291485998|dbj|BAI87073.1| hypothetical protein BSNT_05256 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 329

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/294 (21%), Positives = 118/294 (40%), Gaps = 22/294 (7%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSL 88
              + T+  Y     +F+        + IT      ++   +R++IS     + +   ++
Sbjct: 44  NYRERTINDYRKYWSEFMEVAGIQPTDNIT-----DITEDHLRSYISTMLNVRDLSPVTI 98

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
              L GIKS L  + KR +  E+    +  L+      + L + Q       +      +
Sbjct: 99  NIRLGGIKSILSRMTKRGLINENPAKRVTKLRVDEKTIKMLTDSQVRRFFKMI-----DK 153

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPS 205
             +   R+     +   CGLR +E   L P++I  D   + + G   K  K R+VP+   
Sbjct: 154 DTFPGFRDYVAFLIALKCGLRSNELEGLKPEDIDFDNLVIMLPGAVNKNRKNRMVPMTEQ 213

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA--H 263
           V + + +                +F    G+ +     ++   +      L        H
Sbjct: 214 VAEELRQLLTEMTEYF--GTFTHVFVNQYGEKIAKDHLRKRAAKYGEMADLKKECRPSLH 271

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           +LRH+FA + L NG D+RS+Q I+GH  L++T+IY +       D ++E Y + 
Sbjct: 272 SLRHTFAINYLRNGSDIRSLQKIMGHADLASTEIYLDY----VDDIVIEQYRKA 321


>gi|227889876|ref|ZP_04007681.1| phage integrase/recombinase [Lactobacillus johnsonii ATCC 33200]
 gi|227849567|gb|EEJ59653.1| phage integrase/recombinase [Lactobacillus johnsonii ATCC 33200]
          Length = 322

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 117/294 (39%), Gaps = 25/294 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI-SKR 78
            +L+  ++E G S  T++ Y     Q L  +         ++ +R+++  E+R ++   +
Sbjct: 50  KFLEAKKME-GCSDRTIKYYRVTVEQLLNKV---------VRPVRRVTTEEMREYLVDYQ 99

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +    G  ++      I SF  +L++     +S +  +  ++    +   + ++    L 
Sbjct: 100 KINNCGKTTVDNIRRNISSFFSWLEEEDYILKSPMRRIHKIRAEKLVKNVITDEDIEKLR 159

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D               R+ A++ LLY  G+R+ E + L   +I   +    + GKGDK R
Sbjct: 160 DGC----------SCLRDVAMIDLLYSTGIRVGELVRLNKTDINFSERECVVFGKGDKER 209

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            V      +  ++ Y      D   N  L +        L     +  +RQL R L L  
Sbjct: 210 RVYFDAKSKVHLINYLKSRTDD---NPALFVSLDRPNDRLKISGVEIRLRQLGRKLHLDR 266

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
               H  R S AT  +  G  +  +Q ILGH ++ TT  Y  VN  N      +
Sbjct: 267 -IHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVNQNNVKAAHRK 319


>gi|312884536|ref|ZP_07744240.1| phage integrase family site specific recombinase [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367848|gb|EFP95396.1| phage integrase family site specific recombinase [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 327

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/323 (21%), Positives = 132/323 (40%), Gaps = 62/323 (19%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQ 81
           +++ + RG S  T ++Y    + F+ F          ++  + +  TE+ A++S     Q
Sbjct: 11  RHMRM-RGYSLKTEKAYIYWIKYFIRFNK--------LKHPQDMGTTEVTAYLSYLANEQ 61

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +   + K +L+ I        +R +      L     KK   +P  L   +   ++ + 
Sbjct: 62  HVAINTQKVALNAIAFLYNQFLQRPLGD----LGFTYAKKQRKVPSVLTPNEVQLILSH- 116

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV 200
                     +   N +I  LLYG GLR++E L +  Q++     +L ++ GKG K R+ 
Sbjct: 117 ----------LSGVNHSIFSLLYGSGLRVNECLRIRVQDLDLQNLSLTVRDGKGKKDRVT 166

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQ---------------------------------- 226
            L P++  ++             +I+                                  
Sbjct: 167 LLSPTLIDSLQLQIQKASKIQEEDIKQGIGPSLPHALGKKYPNAFKQIAWMFIFPSLSIC 226

Query: 227 -LPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
             PL   +    L+    ++ +++  +   +     T HT RHSFAT LL +G D+R++Q
Sbjct: 227 RHPLTNKLCRHHLHDSAPRKALKRAVQQAKIFNKRITCHTFRHSFATELLRSGQDIRTVQ 286

Query: 285 SILGHFRLSTTQIYTNVNSKNGG 307
            +LGH  ++TTQIYT+V  ++  
Sbjct: 287 ELLGHSDVATTQIYTHVIGEHFA 309


>gi|327460988|gb|EGF07321.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK1057]
          Length = 328

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 59/298 (19%), Positives = 118/298 (39%), Gaps = 25/298 (8%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  + ++    IE G S+ +L+ Y+         L            IR L+ +++R ++
Sbjct: 52  KLLELFISAKRIE-GCSEKSLKYYKIVIENMFTSLK---------TAIRDLTTSDLRTYL 101

Query: 76  SKRRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +  + ++   + ++        SF  +L+      +S +  +  +K   ++    +++  
Sbjct: 102 AHYQQERKSSKVTIDNMRRIFSSFFGWLEDEDYILKSPVRRIHKIKTDKTIKETFSDEGL 161

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L D             + R+ A++ LL   G+R+ E + L  ++I   +    + GKG
Sbjct: 162 ELLRDAC----------HEIRDLAMIDLLASTGMRVGELVGLNREDINFYERECLVFGKG 211

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +  RIV      +  ++ Y D    D   N  L +        L  G  +  +RQ+    
Sbjct: 212 NSERIVYFDARTKIHLINYLDSRQDD---NPALFVSLSSPYNRLLIGGVETRLRQIGEKA 268

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            L      H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN  N  +   +
Sbjct: 269 DLNK-VHPHKFRRTLATRAIDKGMPIEQVQHLLGHVKIDTTMHYAMVNQANVKNSHRK 325


>gi|300872293|gb|ADK38974.1| IntI4 [Vibrio sp. V92(2010)]
          Length = 296

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 76/313 (24%), Positives = 131/313 (41%), Gaps = 61/313 (19%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLK 89
           L + T+++Y     +++ F        +  +        E+  F++    Q  +  ++  
Sbjct: 1   LKQKTIEAYLHWITRYIHFHNKKHPSLMGDK--------EVEEFLTYLAVQGKVATKTQS 52

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
            +L+ +    K + K  ++ E   +  +  +    LP  L   +   L++          
Sbjct: 53  LALNSLSFLYKEILKTPLSLE---IRFQRSQLERKLPVVLTRDEIRRLLEI--------- 100

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR- 207
             +D ++   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V L   +  
Sbjct: 101 --VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYP 158

Query: 208 ----------------------------KAILEYYDLCPFDLNLNIQLPLFR-------- 231
                                        A+ E Y   P++   +   P F+        
Sbjct: 159 HLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESD 218

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
            +R   +N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R++   LGH  
Sbjct: 219 VMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVHEQLGHTD 278

Query: 292 LSTTQIYTNVNSK 304
           + TTQIYT+V  +
Sbjct: 279 VKTTQIYTHVLDR 291


>gi|326201175|ref|ZP_08191047.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
 gi|325988743|gb|EGD49567.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
          Length = 291

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 126/295 (42%), Gaps = 27/295 (9%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +     +  +L+     S  T+ S+  D  +F+ + A    +K   Q + Q    E R F
Sbjct: 1   MNWITEYENHLKTA-QKSPNTISSFVSDVHEFVEWFAITYGKKFDCQVLEQ-DAREFRGF 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +      +    ++ R ++ +KSF ++L ++ ++ +  I  +     S+   + L   + 
Sbjct: 59  L--LNILRRKPATINRKMAALKSFNQFLVEKGLSKDIPIAGLLLADPSDREIKTLERTEQ 116

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-------- 186
             L   +    +         + AI  LLY  G+R+SE +SL+ +++   +         
Sbjct: 117 NKLKRAIYAKGNKR-------DIAIYELLYNIGVRVSELVSLSLEDVHLTERNGNINYSY 169

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            +  QGKG K R  PL    R A+ EY  +      ++    +F G RG PL      + 
Sbjct: 170 VIIRQGKGSKYRECPLNAQARSALDEYLKIR-----VSSSDNIFIGQRG-PLGREAVDKI 223

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI-YTN 300
           +++     G+    ++H +RH+F T L+  G  L ++  + GH  + TT   Y +
Sbjct: 224 LKKYCADAGIDR-ISSHVIRHTFCTRLIQEGVPLPTVSRLAGHSSVETTTRFYVH 277


>gi|229157770|ref|ZP_04285845.1| Integrase/recombinase (XerC/CodV family) [Bacillus cereus ATCC
           4342]
 gi|228625727|gb|EEK82479.1| Integrase/recombinase (XerC/CodV family) [Bacillus cereus ATCC
           4342]
          Length = 323

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 69/334 (20%), Positives = 136/334 (40%), Gaps = 46/334 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +N+L + +  + LS+ T++SY+   + F  +L    E ++ I  + ++    IR +I  
Sbjct: 8   VENFLLHCDA-KHLSRKTIRSYDQTLKLFASYL----ERELKITDVDKVKPLHIRTYIKY 62

Query: 78  RRTQK-------------------------IGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
            R +                          I + ++   L  IK F  +L+  +   ++ 
Sbjct: 63  LRERGKYTFTSNTASEQINYPTRRTDYGKTISETTIANYLRNIKVFFNFLEAEEDIAKNP 122

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           I N+ ++K        L+  +   ++ ++ + T H       R+  ++ L+   G+R  E
Sbjct: 123 ISNIESIKPQRKQKILLSVDEIKKVLYSIDISTFH-----GFRSYVMIKLILDTGIRAGE 177

Query: 173 ALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
             S+  +++     ++ I   K  K R V     +   +  +        +      LF 
Sbjct: 178 CCSMQAEDLDIKNKSILITNPKNKKQRYVYFSNIMANDLKRWLKYRDRFSDAE---YLFP 234

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
            IRG  LN   F+  IR + + + +    T H LR++FA + + NGGD  S+  +LGH  
Sbjct: 235 TIRGTMLNVNNFEASIRSIGKKVRV--HFTPHQLRNNFAKYYILNGGDWFSLSRVLGHSS 292

Query: 292 LSTTQI-YTNVNSKNGGDWMMEIYDQTHPSITQK 324
           +  TQ  Y +       D +   Y +  P  + K
Sbjct: 293 VEVTQRAYLDFTD----DEIKNKYQRHSPLASMK 322


>gi|293372407|ref|ZP_06618791.1| phage integrase, N-terminal SAM domain protein [Bacteroides ovatus
           SD CMC 3f]
 gi|292632590|gb|EFF51184.1| phage integrase, N-terminal SAM domain protein [Bacteroides ovatus
           SD CMC 3f]
          Length = 330

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 124/294 (42%), Gaps = 25/294 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +++   +IE G S+ TL  Y     + L+ L+           I  ++ ++IRA++S  +
Sbjct: 58  SFISAKKIE-GCSEKTLAYYRNTIERLLLTLSV---------AICHITTSDIRAYLSDYQ 107

Query: 80  TQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            +    + ++        SF  +L+      +S +  +  +K  + +   L+++Q   L 
Sbjct: 108 EEHQSSKVTIDNMRRIFSSFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQLR 167

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D+            + R+ A++ +L   G+R+ E + L  ++I   +    + GKG+K R
Sbjct: 168 DSC----------TNKRDLALIDILSSTGIRVGELVKLNREDIDFHERQCVVFGKGNKER 217

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +V      +  + +Y D    D   N  L +        L     +  IR+L + L +P 
Sbjct: 218 VVYFNARTKLHLQQYLDERTDD---NPALFVSLHSPHTRLTISGVEVRIRKLGKSLSMPK 274

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
               H  R + AT  +  G  +  +Q +LGH R+ TT  Y  VN  N      +
Sbjct: 275 -VHPHKFRRTLATMAIDKGMPIEQVQRLLGHVRIDTTLHYAIVNQNNVKLAHKK 327


>gi|237742003|ref|ZP_04572484.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           4_1_13]
 gi|229429651|gb|EEO39863.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           4_1_13]
          Length = 290

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 60/286 (20%), Positives = 112/286 (39%), Gaps = 12/286 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + K  ++++  LE E      T+ S   D   FL +L      K  I T+ +L    I+ 
Sbjct: 7   IEKAIKDFIYYLEFEENKKNNTVISIRKDLNNFLEYL-----NKKNIITLDKLDELIIKE 61

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++++ +   + + +  R LS IK F KYL    +  +   + +   K      + LN  +
Sbjct: 62  YLTELKDFDLSNSTYNRRLSSIKKFYKYLINNNLKEKGKEILIEGKKSDEKKIQYLNSDE 121

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L + +      E  +   R+  +  LLY  G+ ++E LSL   N   ++  + +  K
Sbjct: 122 IKILREEM-----KEESFNVLRDRLMFELLYSSGMTVAELLSLGELNFNLEKREIYLL-K 175

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
               R +    + ++  L++           N    +F       L     +R I +   
Sbjct: 176 NKISRTLYFSQTCKEVYLKFLIAKKEKFKEENNTNIIFVNNSNMRLTDRSVRRLINKYSE 235

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              L    + +TLRHSF  ++L NG     +  +L    +    IY
Sbjct: 236 KANLQKEVSPYTLRHSFCIYMLKNGMPKEYLAKLLDLKSIGLLDIY 281


>gi|167767086|ref|ZP_02439139.1| hypothetical protein CLOSS21_01604 [Clostridium sp. SS2/1]
 gi|167711061|gb|EDS21640.1| hypothetical protein CLOSS21_01604 [Clostridium sp. SS2/1]
 gi|291559577|emb|CBL38377.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2]
          Length = 328

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 61/303 (20%), Positives = 127/303 (41%), Gaps = 29/303 (9%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E L   + +L   +IE G S+ TL  Y    +Q L  +          +++  +   ++R
Sbjct: 49  EELDYLEIFLSAKKIE-GCSEKTLIYYRNTIQQMLDSVE---------KSVCSIGTEDLR 98

Query: 73  AFISKRRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
            +++  + +K   + ++        SF  +L+      +S +  +  +K  +++     +
Sbjct: 99  DYLADYQAEKKSSKITIDNIRRIFSSFFAWLEDEDYIIKSPVRRIHRIKSGSTIKETYTD 158

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           +Q  T+ DN            + R+ A++ +L   G+R+ E + L  ++I  D+    + 
Sbjct: 159 EQLETMRDNC----------GNLRDLALIDILASTGMRVGELVLLNKEDISFDERECIVF 208

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQ 249
           GKGDK R+V      +  +  Y +       ++    LF  ++     +  G  +  +R+
Sbjct: 209 GKGDKERMVYFDARTKIHLQNYLNSR-----VDTNNALFVSLKAPYDRMKIGGIEVRLRE 263

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           L + L +      H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V   N  + 
Sbjct: 264 LGKRLNIDK-VHPHKFRRTLATVAIDKGMPIEQLQKLLGHQRIDTTLQYAMVKQSNVKNA 322

Query: 310 MME 312
             +
Sbjct: 323 HRK 325


>gi|208703309|ref|YP_002267578.1| integrase/recombinase [Bacillus cereus H3081.97]
 gi|208658164|gb|ACI30531.1| integrase/recombinase [Bacillus cereus H3081.97]
          Length = 319

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/312 (17%), Positives = 123/312 (39%), Gaps = 16/312 (5%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-----IQTIRQLSYT 69
           +   + ++++L+ ++ LS  T+  Y+     F+ +         +      + +  ++  
Sbjct: 1   MTYLKMYVEHLQ-QKDLSHNTVIMYKKSINYFIRWFEETHANYESYYTTFDKAVGDITLD 59

Query: 70  EIRAFISKRRTQK------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK-KS 122
            +  +       K          +++  ++ +K F  YL +  +   +   N +N++   
Sbjct: 60  HLIKYREYLFETKSVTGKPYSLETIRLRVNCVKDFFSYLYEENVIESNPAKNFKNVRYVK 119

Query: 123 NSLPRALNEKQALTLVDN-VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
            S  R L   +   L+          + +W   RN AI+ ++   GLR SE  +L  +++
Sbjct: 120 ESQVRWLTHDEKNRLLRYVEDPKLIIKNEWRGYRNLAIINIMLLAGLRASEVSNLKLEDL 179

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
            +    +R   KG K R +P+   + K + ++ ++       +    +F   RG      
Sbjct: 180 DNGFILIR-SSKGLKGRKLPINHDLGKVLNKWLNVRNEKEQFSDSQYVFLSQRGSKFTEM 238

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              +    L +  G+    + HTLRH+F   L+  G  +  I    GH  + TT IY   
Sbjct: 239 GLTKLFITLEKKTGIE-GLSPHTLRHTFCHDLVEKGTPIHIIADYAGHSSVKTTMIYVTS 297

Query: 302 NSKNGGDWMMEI 313
           ++      + ++
Sbjct: 298 SNMEKKTAVEKL 309


>gi|313148282|ref|ZP_07810475.1| phage integrase [Bacteroides fragilis 3_1_12]
 gi|313137049|gb|EFR54409.1| phage integrase [Bacteroides fragilis 3_1_12]
          Length = 413

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 73/318 (22%), Positives = 145/318 (45%), Gaps = 22/318 (6%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
           G  + E  +F        +L  L+  +G S  T++S     +  +  L         + +
Sbjct: 106 GQFIHEDGAFPFKGFVMEYLDWLKQCKGYSPRTIESRYSQLKTMMQTLK--------VDS 157

Query: 63  IRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           +  ++ + +  +I KR  +     R++  +++ ++ F KY +++ +     + +++  + 
Sbjct: 158 LEDITPSILDNYICKRHDEDGCNRRTIAATVTILRGFFKYAEEKGLCNPGLVYSLKAPRV 217

Query: 122 --SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
               +LP  +       ++      +  +T  I  R+ AIL LL   GLR SE  ++  +
Sbjct: 218 YAHENLPSFVPYNIVQQIL-----QSKKDTAGIGVRDYAILLLLSVYGLRCSEVTNMKLK 272

Query: 180 NIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           +I     TL ++  K  + +++PLLP V  AI+ Y     F+ +    L L +    + L
Sbjct: 273 DIDWRNETLYLRRAKNCRPQVLPLLPIVGNAIVRYIKEVRFNKSKKEYLFLCKRAPHEQL 332

Query: 239 NPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +       +++  +  GL       H+LRH+ ATHL++ G  L+ I  +LGH  L TT+I
Sbjct: 333 STSTIYNLVKKELKDKGLELRHYGPHSLRHTCATHLINTGHSLKEIADLLGHVGLDTTRI 392

Query: 298 YTNVNSKNGGDWMMEIYD 315
           Y  V+ KN    + ++ D
Sbjct: 393 YAKVDIKN----LRKVAD 406


>gi|254443000|ref|ZP_05056476.1| integron integrase subfamily, putative [Verrucomicrobiae bacterium
           DG1235]
 gi|198257308|gb|EDY81616.1| integron integrase subfamily, putative [Verrucomicrobiae bacterium
           DG1235]
          Length = 485

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/332 (21%), Positives = 127/332 (38%), Gaps = 61/332 (18%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E VS E     + +L  L   R  S  T  SY    R F +FL            +R+  
Sbjct: 155 EHVSGEGEVWLEEFLCELR-RRKYSYSTEVSYLQWIRAFAVFLGS--------NALREFG 205

Query: 68  YTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
             ++R F+      +++   S +++L+ +    K + + ++       +    K   +LP
Sbjct: 206 RLDVRRFLDYLALERRVSASSQRQALNAVVFLYKQVFRVELGD---FSDYLRAKSKTNLP 262

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             L + +   L+  +                 +  L YG GLR+SE   L  +++  +  
Sbjct: 263 TVLGKGEMRRLLGEMK-----------GNRLLMAKLQYGTGLRVSELCRLRVKDLDFELG 311

Query: 187 -TLRIQGKGDKIRIVPLLPSVRKAILE--------------------------------- 212
             L + GKG+K R +PL   + K + +                                 
Sbjct: 312 KVLVVGGKGNKDRALPLPKKLAKELEQQLASAREVFEKDRSDEVAGVYLPEALERKFSKA 371

Query: 213 ---YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
              +     +        P    +R   + P  +Q  I +      +    ++H LRHSF
Sbjct: 372 GTDWKWFWVWPSRELGVDPRSDVLRRHHVLPRSYQAAISRAASKAEIQKRVSSHALRHSF 431

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           ATHLL +G +LR++Q ++GH  + TTQ+Y ++
Sbjct: 432 ATHLLDSGINLRTLQELMGHKDIKTTQVYLHL 463


>gi|325696149|gb|EGD38040.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK160]
 gi|328946727|gb|EGG40865.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK1087]
          Length = 328

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 60/298 (20%), Positives = 118/298 (39%), Gaps = 25/298 (8%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  + ++    IE G S+ +L+ Y+      L  L            IR L+  ++R ++
Sbjct: 52  KLLELFISAKRIE-GCSEKSLKYYKIVIENMLTSLK---------TAIRDLTTGDLRTYL 101

Query: 76  SKRRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +  + ++   + ++        SF  +L+      +S +  +  +K   ++    +++  
Sbjct: 102 AHYQQERKSSKVTIDNMRRIFSSFFGWLEDEDYILKSPVRRIHKIKTDKTIKETFSDEGL 161

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L D             + R+ A++ LL   G+R+ E + L  ++I   +    + GKG
Sbjct: 162 ELLRDACD----------EIRDLAMIDLLASTGMRVGELVRLNREDINFYERECLVFGKG 211

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +  RIV      +  ++ Y D    D   N  L +        L  G  +  +RQ+    
Sbjct: 212 NSERIVYFDARTKIHLINYLDNRQDD---NPALFVSLSFPYNRLLIGGVETRLRQIGEKA 268

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            L      H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN  N  +   +
Sbjct: 269 DLNK-VHPHKFRRTLATRAIDKGMPIEQVQHLLGHVKIDTTMHYAMVNQANVKNSHRK 325


>gi|302669260|ref|YP_003832410.1| tyrosine recombinase XerC3 [Butyrivibrio proteoclasticus B316]
 gi|302396924|gb|ADL35828.1| tyrosine recombinase XerC3 [Butyrivibrio proteoclasticus B316]
          Length = 361

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 61/329 (18%), Positives = 127/329 (38%), Gaps = 29/329 (8%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-------EKITI 60
           E +   L      ++    +       T  +Y  D   F  +L              I  
Sbjct: 20  ENIKSTLPLHVHGFVDECLL--RYQPSTAFNYAQDILFFYKYLKEKNPICRNLELRNIPF 77

Query: 61  QTIRQLSYTEIRAFISKRRT----------QKIGDRSLKRSLSGIKSFLKYLKKRKITTE 110
           + I  L   +I  F +   +          +   +R++ R ++ ++++ +Y+ K      
Sbjct: 78  EVIENLGPQDINEFQNYVASGHKPDKTGNIKPANERAIARKMAAVRNYFQYMVKYDYLNA 137

Query: 111 SNILNMRNLKK--SNSLPRALNEKQALTLVDNVL------LHTSHETKWIDARNSAILYL 162
              +     KK       R L+ +Q   L+D+V        H+   ++    R+  I+ L
Sbjct: 138 DPTIKAVVKKKDPEKKDIRRLDSEQVQKLIDSVENVNSASYHSRVMSEITAKRDLTIVTL 197

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           L   G+R+SE   L   ++  +++++ I  KG     + +   +R  + +Y       L 
Sbjct: 198 LLNTGIRVSECAGLDLADVNFNENSITIVRKGGYEDHLYINELIRNTLKDYIKNERPTLL 257

Query: 223 LNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
            N + P LF  ++ + ++    Q  I +  +  GL    T H LR ++ T L +   D+ 
Sbjct: 258 ENAEDPALFISLKHRRMSIRSIQHMIEKYGKNTGLSQKLTPHKLRRTYGTALYNKTSDIY 317

Query: 282 SIQSILGHFRLSTT-QIYTNVNSKNGGDW 309
            +  +LGH  ++TT + Y  +  ++    
Sbjct: 318 MVADVLGHKDVNTTVKHYAAIEEEHKRQA 346


>gi|14600982|ref|NP_147508.1| tyrosine recombinase XerC/XerD [Aeropyrum pernix K1]
 gi|5104468|dbj|BAA79783.1| tyrosine recombinase XerC/XerD [Aeropyrum pernix K1]
          Length = 362

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/318 (22%), Positives = 129/318 (40%), Gaps = 37/318 (11%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           +I  + L    + +L  LE   G S  T++ Y    + FL         ++ +     ++
Sbjct: 16  DIREYSLEDAARLFLTILEST-GWSSKTIKVYRAALKDFLKSYG-----RVRVGDASHMT 69

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSG-IKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           Y +  + +S+R  + +  R+     S  ++ FLK+     +    +       +      
Sbjct: 70  YVQWMSSVSERVRKGVISRTTAHYYSIMVRRFLKWAGVEGVMRPFS-------RGERRFS 122

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
            +L+ +    L+              D  ++ I+ +L   GLR+SE LSL   ++   + 
Sbjct: 123 GSLSWRDVEALLSASR----------DIIDALIVSMLAETGLRVSELLSLRLSDVDLGRG 172

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            +R+ GK  K RIV L P  R  + EY              PL    R   L+     + 
Sbjct: 173 VVRVVGKYGKERIVFLGPLSRMLLEEYL----------ASNPLPPDSRIIELSYQAVYKR 222

Query: 247 IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           ++ L +  GL P     H LRH+FAT  L  G  L ++Q +LGH  +  TQ+Y ++   +
Sbjct: 223 LKSLAKRAGLDPRKVRPHILRHTFATEALRRGMSLAALQRLLGHSDIKVTQLYLHMTYDD 282

Query: 306 GGDWMMEIYDQTHPSITQ 323
                 + +    P +TQ
Sbjct: 283 VEREYYQTF--ASPMLTQ 298


>gi|324993830|gb|EGC25749.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK405]
 gi|324994849|gb|EGC26762.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK678]
 gi|327474704|gb|EGF20109.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK408]
          Length = 328

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 61/298 (20%), Positives = 119/298 (39%), Gaps = 25/298 (8%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  + ++    IE G S+ +L+ Y+      LI L            IR L+  ++R ++
Sbjct: 52  KLLELFISAKRIE-GCSEKSLKYYKIVIENMLISLK---------TAIRDLTTGDLRTYL 101

Query: 76  SKRRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +  + ++   + ++        SF  +L+      +S +  +  +K   ++    +++  
Sbjct: 102 AHYQQERKSSKVTIDNMRRIFSSFFGWLEDEDYILKSPVRRIHKIKTDKTIKETFSDEGL 161

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L D             + R+ A++ LL   G+R+ E + L  ++I   +    + GKG
Sbjct: 162 ELLRDACD----------EIRDLAMIDLLASTGMRVGELVRLNREDINFYERECLVFGKG 211

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +  RIV      +  ++ Y D    D   N  L +        L  G  +  +RQ+    
Sbjct: 212 NSERIVYFDARTKIHLINYLDNRQDD---NPALFVSLSFPYNRLLIGGVETRLRQIGEKA 268

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            L      H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN  N  +   +
Sbjct: 269 DLNK-VHPHKFRRTLATRAIDKGMPIEQVQHLLGHVKIDTTMHYAMVNQANVKNSHRK 325


>gi|300869256|ref|ZP_07113849.1| Integrase family protein [Oscillatoria sp. PCC 6506]
 gi|300332747|emb|CBN59047.1| Integrase family protein [Oscillatoria sp. PCC 6506]
          Length = 281

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 68/285 (23%), Positives = 120/285 (42%), Gaps = 33/285 (11%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L +L +  G SK T  SY   T + L F        +  + +  ++  +I+A+  +    
Sbjct: 13  LLDLWLH-GRSKNTAGSYRLHTSRLLSF--------VDNKPLSSVTLADIQAW--ELTLS 61

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEKQALTLVDN 140
            +   S + ++  IKS L +  K  +   +  L +R+    ++L  R L+E +   ++  
Sbjct: 62  NLSSGSQRTAIFAIKSLLSFGHKLGVLPVNVGLLVRSRGVKDTLSERILSEAEVQAMI-- 119

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD---QSTLRIQGKGDKI 197
                       D RN  +L LLY  GLR+SE   L  +++ +       + I GKG+K 
Sbjct: 120 --------ASETDPRNRVMLRLLYSGGLRVSELCGLKWKDLKERPGAGGQVTIFGKGNKT 171

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLGL 256
           R+V L P +   +++               P+F     G  L+     R ++      G+
Sbjct: 172 RVVLLPPGIWGGLIQ-------LGPGQPDDPVFHSYLGGGHLHRSHLWRIVKAAAIRAGI 224

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               + H LRH+ A+H L  G  +  +Q  LGH  L+T   Y + 
Sbjct: 225 SDKVSPHWLRHAHASHSLDRGAPIHLVQQTLGHSSLATITRYLHA 269


>gi|291551222|emb|CBL27484.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 327

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 125/296 (42%), Gaps = 25/296 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L    IE G S+ TL+ Y    +  L  +          ++I+ +   +IR ++++
Sbjct: 53  VESFLSAKRIE-GCSEKTLKYYNATIQSMLDGIG---------KSIKYIVTDDIRCYLTE 102

Query: 78  RRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            + +K   + ++      + SF  +L+      +S +  +  +K   ++    +++    
Sbjct: 103 YQAKKKSSKVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVKTGTNIKETYSDEALEL 162

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           + DN            + R+ A++ +L   G+R+ E + L  ++I  ++    + GKGDK
Sbjct: 163 MRDNC----------TELRDLAMIDMLASTGMRVGEMVLLNREDIDFNERECVVFGKGDK 212

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            RIV      +  +  Y +    D   N  L +        +N G  +  +RQL + LGL
Sbjct: 213 ERIVYFDARTKIHLQNYLNSRKDD---NPALFVSLQSPHNRMNIGGIEVRLRQLGKRLGL 269

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                 H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V   N      +
Sbjct: 270 NK-VHPHKFRRTLATMAIDKGMPIEQLQQLLGHRRIDTTLQYAMVKQSNVKIAHRK 324


>gi|299538027|ref|ZP_07051313.1| hypothetical protein BFZC1_18515 [Lysinibacillus fusiformis ZC1]
 gi|298726609|gb|EFI67198.1| hypothetical protein BFZC1_18515 [Lysinibacillus fusiformis ZC1]
          Length = 278

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 122/293 (41%), Gaps = 31/293 (10%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           E ER + K T   Y+    + + + +            ++++  +IR ++     +    
Sbjct: 13  EYERRIEKKTSVLYQRTVSEMITYCSI---------PFQEITTRDIRKWLCHLEEKGRAP 63

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            ++ + L G++ F KY  + ++   + +  +R  + ++ +P           +    L  
Sbjct: 64  ATISKKLFGLRLFYKYCLEEQLIAHNPVKAIRLPEINDRMPHY---------LLPNQLLL 114

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLP 204
                  + R  AI+ +LY  G+R+SE +++  ++I   +  + I+ GKG K RIV    
Sbjct: 115 LQRMTETNKRERAIVEVLYTTGVRLSELVAIQLKDIDWSERLIHIRKGKGKKARIVLFTR 174

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              + +  Y          +    LF  +R  KPL     Q         LG+P   + H
Sbjct: 175 MCAEYLQAYLQERD-----SSCPYLFLNMRGTKPLGVRGIQHKFSDYSEELGIPF--SPH 227

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           TLRH+FA HL   G  L  IQ++LGH     TQIY  +          E YDQ
Sbjct: 228 TLRHTFAAHLAMKGMSLDCIQTLLGHEDPHQTQIYARL----YNHARKEQYDQ 276


>gi|311110801|ref|ZP_07712198.1| integrase/recombinase, phage integrase family [Lactobacillus
           gasseri MV-22]
 gi|311065955|gb|EFQ46295.1| integrase/recombinase, phage integrase family [Lactobacillus
           gasseri MV-22]
          Length = 295

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 118/294 (40%), Gaps = 25/294 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI-SKR 78
            +L+  ++E G S  T++ Y+    Q L  +         I+ IR+++  E+R ++   +
Sbjct: 23  KFLEAKKME-GCSDRTIKYYKVTVEQLLAKV---------IRPIRRITTEEMREYLVEYQ 72

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +    G  ++      I SF  +L++     +S +  +  ++    +   + ++    L 
Sbjct: 73  KINNCGKTTIDNIRRNISSFFSWLEEEDYILKSPMRRIHKIRAEKLVKNVITDEDIEKLR 132

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D               R+ A++ LLY  G+R+ E + L   +I   +    + GKGDK R
Sbjct: 133 DGC----------SCLRDVAMIDLLYSTGIRVGELVRLNRNDINFSERECVVFGKGDKER 182

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            V      +  ++ Y      D   N  L +        L     +  +RQL R L L  
Sbjct: 183 RVYFDAKSKVHLINYLRSREDD---NPALFVSLDKPNDRLKISGVEIRLRQLGRKLHLDR 239

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
               H  R S AT  +  G  +  +Q ILGH ++ TT  Y  VN  N      +
Sbjct: 240 -IHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVNQNNVKAAHRK 292


>gi|226949169|ref|YP_002804260.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
 gi|226843724|gb|ACO86390.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
          Length = 330

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 68/336 (20%), Positives = 133/336 (39%), Gaps = 47/336 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              ++   E  + LSK T+ SYE   R F  +L    EE+  I  +++++   IR +I+ 
Sbjct: 8   IDEFMIYCES-KNLSKKTMMSYEQTLRLFTKYL----EEEKGIGDVKKVTEKMIREYINY 62

Query: 78  RRTQK-------------------------IGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
            + +                          +   ++   +  IK F  +L ++    +  
Sbjct: 63  TKNRGKYTIVGDKETLKTNTPEMRKDYGKKVSITTINNYIRNIKVFFNFLLEQSYIKKDV 122

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           + N++  K        + + Q   L+ ++       TK+ + R+   + LL   G+RI E
Sbjct: 123 VKNIKQFKNQRKAKEFITDSQFAELLRHI-----DTTKFHERRDHLCIMLLLDTGMRIGE 177

Query: 173 ALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
            L +  +NI  +  ++ +     KG + R V     + K +  +       +  +    L
Sbjct: 178 CLEIKVENIDMNYRSILLPAEDTKGKRDRYVYFSQVMNKELRRWLQYKDRYVESD---YL 234

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F   +G P+    F+R ++      GL      H LR++FA   L +GG +  +  +LGH
Sbjct: 235 FCTTKGTPVLIRTFERKLKDYANRAGL-KDIHPHQLRNNFAKRFLMSGGSIYILSQVLGH 293

Query: 290 FRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
             +  T Q Y ++   +    + + Y Q  P    K
Sbjct: 294 SSVKVTEQAYLDLTDTD----IRKNYQQFSPLANMK 325


>gi|328554916|gb|AEB25408.1| integrase [Bacillus amyloliquefaciens TA208]
          Length = 343

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 62/316 (19%), Positives = 123/316 (38%), Gaps = 31/316 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-------- 81
           GL + TL  Y+   R F  +L     +   +  I +++   +R +I+  +          
Sbjct: 40  GLRERTLTDYKKMWRYFTEWLN----DNYEVTYIDEITTEILRNYINYMKYDKPRYHGHK 95

Query: 82  ---------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
                     + D ++  +L  IK+   YL + ++   +    ++ L++   L     + 
Sbjct: 96  YIKSDDNKVGLSDTTININLRTIKALFNYLDREELIEVNPATRVKLLRQDIDLTNCFTDD 155

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   ++        +   ++  R+   +  L   GLRI E LSL  ++I      + I  
Sbjct: 156 EIKAIL-----RQPNLRDYVGFRDYCAMNCLLDSGLRIEELLSLREKDIDFSSRFITINA 210

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
              K R   L+P     +     L   + +      +F    G+PL    F + ++    
Sbjct: 211 DVSKNRKHRLVPISAHCVKLLLQLITENKSHFTTDRIFLSSYGEPLGANHFNKRLKYYAE 270

Query: 253 YLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             G+     TAH  RH++A  ++ NG D  ++Q I G   + T + Y  ++++     M 
Sbjct: 271 KAGVKDKKVTAHVYRHTWAKTMILNGCDPFTLQKIGGWSDIRTMRRYIQMDTR----AMR 326

Query: 312 EIYDQTHPSITQKDKK 327
             +D   P  T + KK
Sbjct: 327 RSHDDFSPLTTIRKKK 342


>gi|303255271|ref|ZP_07341342.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae BS455]
 gi|303260417|ref|ZP_07346386.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP-BS293]
 gi|303265063|ref|ZP_07350977.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS397]
 gi|302597740|gb|EFL64815.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae BS455]
 gi|302638452|gb|EFL68918.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP-BS293]
 gi|302645423|gb|EFL75656.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS397]
          Length = 321

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 121/298 (40%), Gaps = 29/298 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q ++   ++E G S  T++ Y+         +          +++ QL+  ++R++++ 
Sbjct: 47  LQLFITAKQVE-GCSSKTIRYYQRTIENLFNAIK---------ESVTQLTTDDLRSYLAN 96

Query: 78  RRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            +++K     +L      + SF  +L++ +   ++ I  ++ +K   ++     ++    
Sbjct: 97  YQSEKDCSKANLDNIRRILSSFFAWLEQEEYIIKNPIRRIKKIKTEQNVKETYTDEHLEI 156

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           + DN            + R+ AI+ LL   G+R+ E + L   +I  +     + GKG K
Sbjct: 157 MRDNCE----------NLRDLAIIDLLASTGMRVGELVQLNRSDIDFENRECVVFGKGKK 206

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--RGKPLNPGVFQRYIRQLRRYL 254
            R V      +  +  Y +        +    LF  +  + + L     +  +R+L   L
Sbjct: 207 ERPVYFDARTKIHLRNYLNDR-----KDSHPALFVTLVGKVQRLGIAGVEIRLRKLGDKL 261

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            +      H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN  N      +
Sbjct: 262 SIQK-VHPHKFRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYAMVNQNNVKHSHQK 318


>gi|119709809|ref|YP_919149.1| phage integrase family protein [Thermofilum pendens Hrk 5]
 gi|119525915|gb|ABL79286.1| phage integrase family protein [Thermofilum pendens Hrk 5]
          Length = 278

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 76/302 (25%), Positives = 134/302 (44%), Gaps = 45/302 (14%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ++    +N+L  ++  R  S  T ++Y      +  F+    +                 
Sbjct: 10  DIRALVENYLGVVKALR--SHNTYKTYASVLFAYAKFVEDTGKPDPA------------- 54

Query: 73  AFISKRRTQKI-GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           AFIS           S++ +   ++ F K+              +  +KK  S+P+AL  
Sbjct: 55  AFISWLEKNGWEKRTSIRTAYVVLRGFHKFAGL--------PWTLPPVKKPESVPKALGT 106

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTL 188
           +    L+    + +  E          ++  L   GLR+SE +    ++++   D +  L
Sbjct: 107 EDVRKLLS---VASPAE--------REVIVFLLKTGLRVSEFVHSRCEDVLVVGDGRYML 155

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R++GKGDK+R+VPL   V + I          +  +   P       KP++    Q  + 
Sbjct: 156 RVRGKGDKVRLVPLTKDVVEIIKARCTGRAGYIFPSPLDP------DKPVSARSIQHLVS 209

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           ++ R  GL    T HTLRH++AT LL+NG D+R+IQ++LGH +L+TTQ+YT V+     D
Sbjct: 210 RVARRAGLQR-VTPHTLRHTYATLLLNNGVDIRTIQTLLGHAQLTTTQVYTKVDVARMVD 268

Query: 309 WM 310
            +
Sbjct: 269 AI 270


>gi|228964325|ref|ZP_04125444.1| Integrase [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228795422|gb|EEM42910.1| Integrase [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 376

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 67/321 (20%), Positives = 140/321 (43%), Gaps = 36/321 (11%)

Query: 8   EIVSFELLKERQNWLQNL--EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           E+   E+   ++ +   +  +   GL+K TL++     + + +    Y EE+    T   
Sbjct: 55  EVTQIEIYTFQELFNIYMFAKEAEGLAKRTLEN----KKGYFLVFHRYLEERHEDVTPNT 110

Query: 66  LSYTEIRAFISKRRTQ-----------------KIGDRSLKRSLSGIKSFLKYLKKRKIT 108
           L    IR F+   +                    +    +   +  +++F  +L + +  
Sbjct: 111 LDTNTIREFLYYLKNDHIKHKNNHCIKEKYKSIGVSVSYINTIMKHMRAFYNFLVEEEYV 170

Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
             +    +++LK++     AL+  Q  TL+        ++  +   R+  ++ LL   G+
Sbjct: 171 QLNPFTKIKSLKEAQDNIEALSVDQLKTLL-----KQPNQRTYAGFRDYVLMMLLADTGM 225

Query: 169 RISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           RISEAL+L  +++    + + ++G   K  + R VP+     K + E       ++    
Sbjct: 226 RISEALNLQQEDLDFKTNIIELKGTNTKNRQTRYVPISQKTSKLLRELLV----EIEEFD 281

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQ 284
            L +F  + G  ++P  F++ ++      G+  +  + HT RH+FA + L N GD+ ++Q
Sbjct: 282 TLHIFATVYGNAIDPARFRQRLKMYGHNSGIKGVRVSPHTFRHTFAKYYLLNNGDVMTLQ 341

Query: 285 SILGHFRLSTTQIYTNVNSKN 305
            ILGH  +   + Y N+ SK+
Sbjct: 342 KILGHSSIEMVRKYINMTSKD 362


>gi|224538864|ref|ZP_03679403.1| hypothetical protein BACCELL_03760 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519518|gb|EEF88623.1| hypothetical protein BACCELL_03760 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 330

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 60/298 (20%), Positives = 120/298 (40%), Gaps = 25/298 (8%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + +L   ++E G +  T++ Y    +Q L  +          + +   S  +IRA++
Sbjct: 54  RLLEIFLSAKQVE-GCTTPTIKYYSSTIKQLLKKM---------PKKVVDYSTEDIRAYL 103

Query: 76  S-KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +  +R  K    ++        SF  +L++     +S I  +  +K    +   L ++  
Sbjct: 104 AVFQRKNKSSKVTIDNIRRIFSSFFAWLEEEDYIIKSPIRRIHKVKTGTQVKEILTDENI 163

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L DN           I  R+ A++ LL   G+R+ E + L  ++I  ++    + GKG
Sbjct: 164 EHLRDNC----------IKIRDLAMIDLLASTGMRVGELVKLDREDINFNERECIVFGKG 213

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +K RIV      +  + +Y        + N  L +        L     +  +R++ R  
Sbjct: 214 NKERIVYFNARAKIHLQQYLSTR---KDRNKALFVSLAKPHNRLQISGVETRLRKIGRQA 270

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            + +    H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V+  N      +
Sbjct: 271 KI-VRVHPHKFRRTLATMAIDKGMPVEQVQKLLGHVKIDTTMHYAMVSQNNVKLSHRK 327


>gi|168218110|ref|ZP_02643735.1| DNA integration/recombination protein [Clostridium perfringens NCTC
           8239]
 gi|182379864|gb|EDT77343.1| DNA integration/recombination protein [Clostridium perfringens NCTC
           8239]
          Length = 338

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 69/343 (20%), Positives = 136/343 (39%), Gaps = 46/343 (13%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ELL     ++ + +  R L + +++ YE   +    FL    E+   +  +  +    IR
Sbjct: 11  ELLDVLDTFMTDCKY-RDLRRASIRLYERSLKLLFKFL----EDDYKLIYVEDVKEEHIR 65

Query: 73  AFISKRRTQK-------------------------IGDRSLKRSLSGIKSFLKYLKKRKI 107
            +I   + +                          I   +L   +  IK F K+    K 
Sbjct: 66  NYIKFTKERGKYSYVSNDNNLDINSPQNRGDFGQPISLCTLDSYVGTIKMFFKWCVDNKY 125

Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
             ++    ++ +K S +  + +   +   L+ N+ L     T + + R+  I+ LL   G
Sbjct: 126 LKQNPTNKIKRIKFSRNPKQEVTIDEFNKLLQNLDL-----TLFSEYRDYVIIQLLLDTG 180

Query: 168 LRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
           +RI E L L   ++     T+ I     KG K R V     +++ + ++       +   
Sbjct: 181 MRIGECLELKEDDVDIRNKTIFISAEIAKGRKDRYVFFSNIMQRTLEKWLIYKDRYVG-- 238

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
               LF   RG       F++++R   +   +    T HTLR++FA   L +GGD+ ++ 
Sbjct: 239 -SEYLFVTNRGSKYQIHSFEKHMRNYLKRARIDKKITPHTLRNNFAKRFLMSGGDIYTLS 297

Query: 285 SILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
            +LGH  +  T+  Y ++ + +    + + Y +  P    K K
Sbjct: 298 KLLGHSSVRVTESAYLDLTTSD----IRKNYLKFSPLENMKKK 336


>gi|189467606|ref|ZP_03016391.1| hypothetical protein BACINT_03996 [Bacteroides intestinalis DSM
           17393]
 gi|189435870|gb|EDV04855.1| hypothetical protein BACINT_03996 [Bacteroides intestinalis DSM
           17393]
          Length = 330

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 60/298 (20%), Positives = 120/298 (40%), Gaps = 25/298 (8%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + +L   ++E G +  T++ Y    +Q L  +          + +   S  +IRA++
Sbjct: 54  RLLEIFLSAKQVE-GCTTPTIKYYSSTIKQLLKKM---------PKKVVDYSTEDIRAYL 103

Query: 76  S-KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +  +R  K    ++        SF  +L++     +S I  +  +K    +   L ++  
Sbjct: 104 AVFQRKNKSSKVTIDNIRRIFSSFFAWLEEEDYIIKSPIRRIHKVKTGTQVKEILTDENI 163

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L DN           I  R+ A++ LL   G+R+ E + L  ++I  ++    + GKG
Sbjct: 164 EHLRDNC----------IKIRDLAMIDLLASTGMRVGELVKLDREDINFNERECIVFGKG 213

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +K RIV      +  + +Y        + N  L +        L     +  +R++ R  
Sbjct: 214 NKERIVYFNARAKIHLQQYLSTR---KDRNKALFVSLAKPHNRLQISGVETRLRKIGRQA 270

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            + +    H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V+  N      +
Sbjct: 271 KI-VRVHPHKFRRTLATMAIDKGMPVEQVQKLLGHVKIDTTMHYAMVSQNNVKLSHRK 327


>gi|154504725|ref|ZP_02041463.1| hypothetical protein RUMGNA_02232 [Ruminococcus gnavus ATCC 29149]
 gi|153794899|gb|EDN77319.1| hypothetical protein RUMGNA_02232 [Ruminococcus gnavus ATCC 29149]
          Length = 288

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 61/293 (20%), Positives = 124/293 (42%), Gaps = 33/293 (11%)

Query: 18  RQNWLQNLEI---ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
            + +L+ LE     R L   ++  Y+     FL +           +  ++L+  ++R F
Sbjct: 7   YEKYLEQLEEAGKIRNLKDRSISCYKNYVSYFLKYQN---------KNPKELTCQDVRVF 57

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +  ++ + +   +L    S I+ F + +    I  +   + +  +   + LP  L   + 
Sbjct: 58  LLAKKEEGLKATTLNLYNSAIRFFYRNVL--HILWDD--ITVPRMILEHKLPTVLTASEI 113

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D V           D +  A+  ++Y  G+R+SE + L   +I      + ++   
Sbjct: 114 DRLLDAVD----------DIKYKAMFAVMYSSGMRVSEVIHLHYDDISRSNMQIHVRDTK 163

Query: 195 DK-IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRR 252
           ++  R   L       + +Y+           +  LF        L     ++ +R+   
Sbjct: 164 NRMDRYTILSKRCLDILTQYWFE-----KGRPRGILFPNKFTGNYLTVSTLEQVMRRAVA 218

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
              LP + T H LRHSFATHL+  G +  +IQ++LGH    +T++Y +V++K+
Sbjct: 219 DTELPKAATPHCLRHSFATHLMEQGIERHNIQALLGHRDPKSTEVYLHVSNKS 271


>gi|157168021|gb|ABV25530.1| IntI1 [Klebsiella pneumoniae]
          Length = 300

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 68/319 (21%), Positives = 127/319 (39%), Gaps = 64/319 (20%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSI 286
           SFAT LL +G D+R++Q +
Sbjct: 282 SFATALLRSGYDIRTVQDL 300


>gi|220683968|gb|ACL80790.1| IntIA [Vibrio tasmaniensis]
          Length = 324

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 75/324 (23%), Positives = 133/324 (41%), Gaps = 61/324 (18%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            ++Q   + R  +  T ++Y     Q++++           +  + L+   +  F++   
Sbjct: 8   AYIQEYMLARHYALRTTKAYIYWIHQYILYH--------DKKHPKSLTSRHVEDFLTHLV 59

Query: 80  -TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +K+  ++   +L+ +    K + +  I  +   +  R   KS  LP  +  ++     
Sbjct: 60  IDKKLAQKTQSLALNALVFLYKEIIQEPIELD---MQFRRSDKSRKLPTVMTPEEIGRFF 116

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197
           ++                     L+YG GLR+ E L L  Q+I  D  ++R+ QGKG K 
Sbjct: 117 NHC-----------SPNFKLPYQLMYGSGLRLMECLRLRMQDIDYDYKSVRVWQGKGGKN 165

Query: 198 RIVPLLPSVRKAIL-------EYYDLCPFDLNLN-------------------IQLPLFR 231
           RIV + P +  AI        EY+     D   +                       LF 
Sbjct: 166 RIVTIAPELFPAIKLQQQKSAEYHQQDIHDEAFSGVYLPDSLAKKYPSAERSLNWQFLFP 225

Query: 232 G-----------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
                       +R   ++P   Q++I+   +   +    + HTLRHSFATHLL +G D+
Sbjct: 226 SARLAPDLRTGVLRRHHIHPTALQKHIKVASQKADIEKDISCHTLRHSFATHLLQSGADI 285

Query: 281 RSIQSILGHFRLSTTQIYTNVNSK 304
           R++Q  LGH  L TTQIYT++  +
Sbjct: 286 RTVQEQLGHADLKTTQIYTHIIDR 309


>gi|237740650|ref|ZP_04571131.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           2_1_31]
 gi|229422667|gb|EEO37714.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           2_1_31]
          Length = 280

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 59/275 (21%), Positives = 113/275 (41%), Gaps = 12/275 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + K  +N++  LE E      T+ S   D  QFL +L  +      I    +L    I+ 
Sbjct: 2   IEKSIKNFIYYLEFEENKKHNTVISIRKDLNQFLTYLNEH-----DIIDFNKLDELLIKE 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           + +K +T+KI   +  R LS IK F KYL  + +  + + + + + K        L  ++
Sbjct: 57  YFTKLKTEKISASTFNRRLSSIKKFYKYLVDKGLKEKGSEILIESEKNDEKKIEYLTPEE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                 N++  T     +   R+  +  LLY  G+ ++E LSL   N   ++  + I  K
Sbjct: 117 I-----NLVRTTMEGESFNILRDRLMFELLYSSGMTVAELLSLGEVNFNLEKREIYIL-K 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRR 252
               + +    + ++  +++ +        +    + F     + L     +R I +   
Sbjct: 171 NKLSKTMYFSETCKEFYIKFLNSKKEKFKEDYNPNIIFTNNSNERLTDRSVRRLINKYAE 230

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
              L    + +TLRHSF  ++L NG     +  +L
Sbjct: 231 MANLNKEISPYTLRHSFCIYMLKNGMPKEYLARLL 265


>gi|300872269|gb|ADK38962.1| IntI4 [Vibrio sp. V2(2010)]
          Length = 293

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 77/313 (24%), Positives = 127/313 (40%), Gaps = 61/313 (19%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGI 95
           ++Y     +++ F        +  +        E+  F++    Q  +  ++   +L+ +
Sbjct: 1   EAYLHWITRYIHFHNKKHPSLMGDK--------EVEEFLTYLAVQGKVATKTQSLALNSL 52

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
               K + K  ++ E   +  +  +    LP  L   +   L+D            +D +
Sbjct: 53  SFLYKEILKTPLSLE---IRFQRSQLERKLPVVLTRDEIRRLLDV-----------VDPK 98

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR------- 207
                 LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V L   +        
Sbjct: 99  YQLPAKLLYGSGLRLMECIRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPYLKEQI 158

Query: 208 ----------------------KAILEYYDLCPFDLNLNIQLPLFR--------GIRGKP 237
                                  A+ E Y   P++   +   P F+         +R   
Sbjct: 159 ALAKRYYDRDLHQNNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHH 218

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +N  V QR +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH  + TTQI
Sbjct: 219 MNETVLQRTVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQI 278

Query: 298 YTNVNSKNGGDWM 310
           YT+V  +     +
Sbjct: 279 YTHVLDRGASSVL 291


>gi|330834471|ref|YP_004409199.1| phage integrase family protein [Metallosphaera cuprina Ar-4]
 gi|329566610|gb|AEB94715.1| phage integrase family protein [Metallosphaera cuprina Ar-4]
          Length = 284

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 64/301 (21%), Positives = 130/301 (43%), Gaps = 31/301 (10%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
              Q ++Q+L++  G  + T++ Y      FL F+     E  T   I  ++   +R   
Sbjct: 13  DPFQYFIQSLKLS-GAGQGTIKLYYSAINDFLKFVNKNPNEVTTQDVINWINVLSVREGR 71

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           SK   +K    +++  +  ++ FL++L    +     +  +R  ++     RAL E +  
Sbjct: 72  SKTGDRKGRASTIRSYVIAVRRFLRWL---GVNVRPPVPRIRTPER-----RALRESEIE 123

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKG 194
            ++ +              R+ A++ LL   GLR SE LS+T  ++   + T+R++  K 
Sbjct: 124 NIISSCKR----------LRDRALISLLLDTGLRSSELLSITVGDLDLQERTIRVRETKN 173

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            + RIV         + ++        N  +            +      + +++L +  
Sbjct: 174 GEERIVFFTARTASLLNQFIRKTKKGENERVFE----------ITYQALYKLVKRLGKKN 223

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+      H LRH+FAT+ +  G  L  +Q +LGH  + TTQIYT++ + +      +++
Sbjct: 224 GISW-LRPHILRHTFATNAIKKGAPLPVVQRLLGHKDIKTTQIYTHLMTDDLKRVYRDVF 282

Query: 315 D 315
           +
Sbjct: 283 E 283


>gi|188989765|ref|YP_001901775.1| tyrosine recombinase [Xanthomonas campestris pv. campestris str.
           B100]
 gi|167731525|emb|CAP49700.1| tyrosine recombinase [Xanthomonas campestris pv. campestris]
          Length = 327

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 73/328 (22%), Positives = 133/328 (40%), Gaps = 61/328 (18%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           R  S  T Q+Y    R+F++                Q+   E+ AF++   T+  +   +
Sbjct: 19  RHYSLRTEQAYVGWIRRFILANGKRHP--------AQMGQAEVEAFLTDLATRGQVSAGT 70

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++L+ +    + +   ++     + N+   K+   +P  L+ ++   L+         
Sbjct: 71  QNQALAALLFLYREILGLEL---PWMENLVRAKRPRRIPVVLSVEEVARLL--------- 118

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
               ++     +  LLYG G+R+ E L L  +++   +  + ++ GKG K R VPL  S+
Sbjct: 119 --TMLEGACRLMAGLLYGSGMRLLECLRLRIKDVDMVRCEIVVRDGKGGKDRRVPLPRSL 176

Query: 207 RKAILEYY------------------------------------DLCPFDLNLNIQLPLF 230
           R  +++                                          F        P  
Sbjct: 177 RGELMQQRERALLLHAADLAEGAGQVFLPHALARKYPSADVEPGWQYLFPAARRSVDPRS 236

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +    ++  + QR ++  RR  G+    T HTLRH+FATHLL  G D+R++Q +LGH 
Sbjct: 237 GRVGRHHVSEEILQRAVQAARRRAGIDKPATCHTLRHAFATHLLEAGHDIRTVQELLGHK 296

Query: 291 RLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
            ++TTQIYT+V  + G   +    D  H
Sbjct: 297 DVATTQIYTHVLGR-GASAVRSPLDGLH 323


>gi|325980818|ref|YP_004293221.1| integrase family protein [Nitrosomonas sp. AL212]
 gi|325533323|gb|ADZ28042.1| integrase family protein [Nitrosomonas sp. AL212]
          Length = 316

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 67/279 (24%), Positives = 117/279 (41%), Gaps = 28/279 (10%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T ++YE   + F+ F      E+      R ++   I A+      + +   S++  L+ 
Sbjct: 38  TRRAYENALKDFMNFTGIQNPEE-----FRVVTRAHIIAWRDDLMNRSLSSMSIRHRLAA 92

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSN---SLPRALNEKQALTLVDNVLLHTSHETKW 151
           + S  +YL ++   T + +  ++     +     P A+ + QA  L+D         +  
Sbjct: 93  LSSLFEYLCEKNTVTHNPVKGVKRPAVESYEGKTP-AIGDHQARKLLD-----APDGSSL 146

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL---RIQGKGDKIRIVPLLPSVRK 208
              R+ AIL  L    LR  E   L  ++   ++  +   +I GKG K R VPL P+   
Sbjct: 147 KGKRDRAILATLLYHALRRDELCRLKVKDFKQERRGVPHMKISGKGGKTRYVPLHPAASG 206

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGK-------PLNPGVFQRYIRQLRRYLGLPLSTT 261
            I +Y D     L       LFR            P+ P    + +++    LG      
Sbjct: 207 LIHDYLDAAEHGLE--DTGALFRSTSNNRDKESQKPITPDGVYKLVQKYSEKLG--FKIG 262

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           AH+LR + AT+ L +  D+  +Q  LGH  ++TT+IY +
Sbjct: 263 AHSLRATAATNALDHQADIAKVQEWLGHANIATTRIYDH 301


>gi|240173410|ref|ZP_04752068.1| Integrase [Mycobacterium kansasii ATCC 12478]
          Length = 346

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 69/330 (20%), Positives = 124/330 (37%), Gaps = 23/330 (6%)

Query: 7   PEIVSFELLKERQNWLQ-NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           P   + +     +++L   +   RGLS  T+++Y      FL +LA          +  +
Sbjct: 5   PHTGAPDFFGVARDYLHSYIPKTRGLSPKTVEAYRISLECFLDYLAEAEHIGREHVSFDR 64

Query: 66  LSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTES---NILNMRNLKK 121
                ++ +++    Q+    +++   LS IK+FL Y     +T  +       ++    
Sbjct: 65  FDRPHLKGWLAWMTDQRHYTPKTVTLRLSAIKAFLAYAAYEDLTLVALSQAAKALKAPAG 124

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
                  L E Q   ++      T+   +     N  +L LLY    R+ E   LT  ++
Sbjct: 125 PRRPVEYLTEAQTRAILAAFTGQTAKSRR-----NRMLLILLYDTAARVGEITGLTLGDL 179

Query: 182 MD-DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKP-- 237
              +   + + GKG+K R+VPL       +  Y D    ++  L  + PLF  +      
Sbjct: 180 RLTEPGHILLTGKGNKTRVVPLTDKTIGHLHVYLDEFHPNITKLPARRPLFYSLHRGRPA 239

Query: 238 -LNPGVFQRYIRQLRRYL-----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
            L+       ++Q           +P +   H LR + A  L   G  L  I  +LGH  
Sbjct: 240 ELSADTVAAVLKQAAESARTQCPSIPANIHCHLLRKTKAMDLYQQGIPLPIIMRLLGHEN 299

Query: 292 LSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            STT       +    D M +  +   P+I
Sbjct: 300 ASTT---AAFYAFATLDMMRQAINAATPAI 326


>gi|255010477|ref|ZP_05282603.1| site-specific recombinase, phage integrase family protein
           [Bacteroides fragilis 3_1_12]
          Length = 537

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 73/318 (22%), Positives = 145/318 (45%), Gaps = 22/318 (6%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
           G  + E  +F        +L  L+  +G S  T++S     +  +  L         + +
Sbjct: 230 GQFIHEDGAFPFKGFVMEYLDWLKQCKGYSPRTIESRYSQLKTMMQTLK--------VDS 281

Query: 63  IRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           +  ++ + +  +I KR  +     R++  +++ ++ F KY +++ +     + +++  + 
Sbjct: 282 LEDITPSILDNYICKRHDEDGCNRRTIAATVTILRGFFKYAEEKGLCNPGLVYSLKAPRV 341

Query: 122 --SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
               +LP  +       ++      +  +T  I  R+ AIL LL   GLR SE  ++  +
Sbjct: 342 YAHENLPSFVPYNIVQQIL-----QSKKDTAGIGVRDYAILLLLSVYGLRCSEVTNMKLK 396

Query: 180 NIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           +I     TL ++  K  + +++PLLP V  AI+ Y     F+ +    L L +    + L
Sbjct: 397 DIDWRNETLYLRRAKNCRPQVLPLLPIVGNAIVRYIKEVRFNKSKKEYLFLCKRAPHEQL 456

Query: 239 NPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +       +++  +  GL       H+LRH+ ATHL++ G  L+ I  +LGH  L TT+I
Sbjct: 457 STSTIYNLVKKELKDKGLELRHYGPHSLRHTCATHLINTGHSLKEIADLLGHVGLDTTRI 516

Query: 298 YTNVNSKNGGDWMMEIYD 315
           Y  V+ KN    + ++ D
Sbjct: 517 YAKVDIKN----LRKVAD 530


>gi|325690779|gb|EGD32780.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK115]
          Length = 328

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 62/298 (20%), Positives = 119/298 (39%), Gaps = 25/298 (8%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  + ++    IE G S+ +L+ Y          L           T+R ++ +++R ++
Sbjct: 52  KLLELFISAKRIE-GCSEKSLKYYRMVIENMFTSLNL---------TVRDITTSDLRTYL 101

Query: 76  SK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +  +R +K    ++        SF  +L+      +S +  +R +K   ++    +++  
Sbjct: 102 AHYQRERKSSKVTIDNMRRIFSSFFSWLEDEDFILKSPVRRIRKIKTDKTIKETFSDEGL 161

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L D             + R+ A++ LL   G+R+ E + L  ++I   +    + GKG
Sbjct: 162 ELLRDACD----------EIRDLAMIDLLASTGMRVGELVRLNREDINFYERECLVFGKG 211

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +  RIV      +  ++ Y D    D   N  L +        L  G  +  +RQL    
Sbjct: 212 NSERIVYFDARTKIHLINYLDSRQDD---NPALFVSLSSPHDRLLIGGVETRLRQLGEKA 268

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            L      H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN  N  +   +
Sbjct: 269 DLNK-VHPHKFRRTLATRAIDKGMPIEQVQHLLGHVKIDTTMHYAMVNQANVKNSHRK 325


>gi|27363605|ref|NP_759133.1| site-specific recombinase XerD [Vibrio vulnificus CMCP6]
 gi|27359721|gb|AAO08660.1| Site-specific recombinase XerD [Vibrio vulnificus CMCP6]
          Length = 348

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 70/327 (21%), Positives = 126/327 (38%), Gaps = 40/327 (12%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                +L         S  T++ Y     Q   F+     +K+ ++ + Q S        
Sbjct: 18  DPIDQFLTWKRDSENCSAKTVRKYRGLLEQLKKFVDGQF-DKVELKDLEQFSG------- 69

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                      S K +++ I+ F  +L KR++  ++   ++   K    LPR +  K A 
Sbjct: 70  GWLHRAGYSAASRKVAVAAIRGFYSFLAKRRLVAKNPASDLVYPKIGRRLPRFMGLKSAE 129

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD------DQSTLR 189
            L+          T     R+SA+L LL GCG R++    L    ++       ++  +R
Sbjct: 130 ALL-----FQPELTSLSGVRDSAMLSLLIGCGFRVAGLCGLNESQLIWYQYGEVERLAIR 184

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGK--------- 236
              KG++ R+VP+       +  Y           L  +    LF  +R +         
Sbjct: 185 TMEKGERERLVPVPLEAMLLVQAYLGHPDLKHVDRLLDDGDQVLFVNLRNRHVPEWEHRG 244

Query: 237 ---PLNPGVFQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
               L+     R I++     G+P     AH LRH F T L  +      IQ+++GH   
Sbjct: 245 ELRRLSTRAVDRMIKKYAIAAGVPEDQAHAHALRHLFGTELAESDSSTLQIQALMGHADP 304

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T++IYT+++ +     M  + D+ +P
Sbjct: 305 KTSEIYTHISMR----KMTNVLDKGNP 327


>gi|300872271|gb|ADK38963.1| IntI4 [Vibrio sp. V3(2010)]
          Length = 293

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 75/312 (24%), Positives = 128/312 (41%), Gaps = 61/312 (19%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIK 96
           +Y     +++ F        +  +        E+  F++    Q  +  ++   +L+ + 
Sbjct: 2   AYLHWITRYIHFHNKKHPSLMGDK--------EVEEFLTYLAVQGKVATKTQSLALNSLS 53

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
              K + K  ++ E   +  +  +    LP  L   +   L++            +D ++
Sbjct: 54  FLYKEILKTPLSLE---IRFQRSQLERKLPVVLTRDEIRRLLEI-----------VDPKH 99

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR-------- 207
              + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V L   +         
Sbjct: 100 QLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIA 159

Query: 208 ---------------------KAILEYYDLCPFDLNLNIQLPLFR--------GIRGKPL 238
                                 A+ E Y   P++   +   P F+         +R   +
Sbjct: 160 LAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHM 219

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH  + TTQIY
Sbjct: 220 NETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIY 279

Query: 299 TNVNSKNGGDWM 310
           T+V  +     +
Sbjct: 280 THVLDRGASGVL 291


>gi|88800925|ref|ZP_01116478.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Reinekea sp. MED297]
 gi|88776370|gb|EAR07592.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Reinekea sp. MED297]
          Length = 325

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 63/318 (19%), Positives = 132/318 (41%), Gaps = 60/318 (18%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           ++++      S  T+Q+Y    ++++ F      + + ++ + Q        F++   TQ
Sbjct: 14  MRDILARNHYSPNTIQTYLHWAKEYIYFHNKRHPKDLGVEELAQ--------FLTHLATQ 65

Query: 82  K-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           K +   +  ++L+ +    +++ +  +        +R+ ++  ++P  L++ +   L++ 
Sbjct: 66  KRVSPSTQAQALNALVYLYRHVLEIDLGDID---FLRSQRRFKNIPTVLSQAEVTDLLN- 121

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRI 199
                      I  +   +  LLYG GLR++E ++L  +++     ++ I+ GKG K R+
Sbjct: 122 ----------RIRGKLRVMDSLLYGSGLRVNECVTLRMKDVDLAMKSITIRNGKGLKARV 171

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNI-------------------------QLPLFRG-- 232
           VP+   +   +             +                             LF    
Sbjct: 172 VPIPERLVGPLQSVMVHRKEQHIQDTLQGAGYVQLPWAFDRKSPNAAQSIQWQFLFSSGV 231

Query: 233 ---------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                          +    Q+ +++      L    T HTLRHSFATHLL+ G D+R+I
Sbjct: 232 LNVDKKSGRKMRWHCSTSTLQKAVKKAAEQAQLTKRVTCHTLRHSFATHLLTTGTDIRTI 291

Query: 284 QSILGHFRLSTTQIYTNV 301
           Q ++GH  L+TT IYT++
Sbjct: 292 QQLMGHKDLNTTMIYTHI 309


>gi|154505016|ref|ZP_02041754.1| hypothetical protein RUMGNA_02526 [Ruminococcus gnavus ATCC 29149]
 gi|153794686|gb|EDN77106.1| hypothetical protein RUMGNA_02526 [Ruminococcus gnavus ATCC 29149]
          Length = 288

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 61/293 (20%), Positives = 125/293 (42%), Gaps = 33/293 (11%)

Query: 18  RQNWLQNLEI---ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
            + +L+ LE     R L   ++  Y+     FL +           +  ++L+  ++R F
Sbjct: 7   YEKYLEQLEEAGKIRNLKDRSISCYKNYVSYFLKYQN---------KNPKELTCQDVRVF 57

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +  ++ + +   +L    S I+ F + +    I  +   + +  +   + LP  L   + 
Sbjct: 58  LLAKKEEGLKATTLNLYNSAIRFFYRNVL--HILWDD--ITVPRMILEHKLPTVLTASEI 113

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D V           D +  A+  ++Y  G+R+SE + L   +I   +  + ++   
Sbjct: 114 DRLLDAVD----------DIKYKAMFAVMYSSGMRVSEVIHLHYDDISRSKMQINVRDTK 163

Query: 195 DK-IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRR 252
           ++  R   L       + +Y+           +  LF        L     ++ +R+   
Sbjct: 164 NRMDRYTILSKRCLDILTQYWFE-----KGRPRGILFPNKFTGNYLTVSTLEQVMRRAVA 218

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
              LP + T H LRHSFATHL+  G +  +IQ++LGH    +T++Y +V++K+
Sbjct: 219 DTELPKAATPHCLRHSFATHLMEQGIERHNIQALLGHRDPKSTEVYLHVSNKS 271


>gi|222530398|ref|YP_002574280.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222457245|gb|ACM61507.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 283

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 74/302 (24%), Positives = 136/302 (45%), Gaps = 22/302 (7%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ++E  NWL    + +G  + T ++Y      FL +     + +   + +       IR +
Sbjct: 1   MQEFHNWL----LGKGKMESTAKTYIRAVENFLKWYQESYDREFDGKVL----PLHIRNY 52

Query: 75  ISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN--MRNLKKSNSLPRALNE 131
            S   T +K+  +++  +LS IKS+  +L ++ +   + +L+    ++++    P  L  
Sbjct: 53  RSYLMTVKKLNAKTINNNLSAIKSYCDFLVEKGLIETNPVLDDYFIDVQEPGVSPAKLEN 112

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           K    L + V+ + S       AR+ AI Y L   G+R+SE  ++   +I+ D+  +   
Sbjct: 113 KDFNKLEEAVVHYGS-------ARDIAIFYTLAYTGVRVSELCNIRLNDIVKDELIIY-Y 164

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG K R +PL  +VR+AI  +          +    LF   RG  L+     R I++  
Sbjct: 165 GKGGKQRKIPLNRTVREAIDNWLKER-GKYKYSHLDYLFISERG-KLDRSTVYRIIKEYC 222

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R   +      H LRH F    L  G  +  + ++ GH R++TTQIY N +     + + 
Sbjct: 223 RIAKIE-PIGPHQLRHYFCKRALEKGFTITEVAALAGHSRITTTQIYINPSMLELKEKIE 281

Query: 312 EI 313
            +
Sbjct: 282 RL 283


>gi|256840313|ref|ZP_05545821.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737585|gb|EEU50911.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 350

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 72/318 (22%), Positives = 132/318 (41%), Gaps = 20/318 (6%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-Q 81
             +   +  S  T ++Y+   + ++ FL           +        I  +I   +  +
Sbjct: 21  HYVPSIKACSPHTKRNYKISVKLYVEFLRVIKGTTPETLSAECFCMEYIMEWIIWLKENR 80

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL---NMRNLKKSNSLPRALNEKQALTLV 138
                +    LS ++ FLKYL  R I+  S  L   N+ N K S      L+++      
Sbjct: 81  GCSPATCNVRLSALRVFLKYLSFRDISYMSVFLQAENVPNEKNSKRKVIGLSKQAV---- 136

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDK 196
            +VLL   ++   I  R+  ++ LLY   +RI+E L+L   NI+ D  +  + + GKG K
Sbjct: 137 -DVLLSMPNQGSTIGFRDYTLMLLLYSTAVRINELLTLKISNIVIDCVKPHIIVIGKGRK 195

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR---GKPLNPGVFQRYIRQLRRY 253
            R +PLL    + +  Y        N +    LF         P++     + +++    
Sbjct: 196 KRPIPLLAKPAQCLKRYLIKYHPKQN-DANALLFCSKSKGIYVPMSAENVNKMLKKYATM 254

Query: 254 LG-----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                  +P+   AH  RH+ A+H L NG ++  I  +LGH  + TT +Y ++ +K    
Sbjct: 255 AHERCQDVPMDLHAHQFRHAKASHWLENGMNIAQISYLLGHESIQTTMVYLDITTKQEEK 314

Query: 309 WMMEIYDQTHPSITQKDK 326
            +  +  +    + +K K
Sbjct: 315 ALETLEGENQKKMRKKWK 332


>gi|255652516|ref|ZP_05399418.1| site-specific tyrosine recombinase XerC [Clostridium difficile
           QCD-37x79]
          Length = 323

 Score =  156 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 54/305 (17%), Positives = 130/305 (42%), Gaps = 10/305 (3%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA- 73
           ++  + +L NL++     + T+++Y  D ++ + +L  + +E  T++ + ++ +T+I+  
Sbjct: 4   IEALEEFLLNLKLYNDRDEKTIKAYRADVKEGIRYL--FKKENCTMEELDKILFTDIQEK 61

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK-KSNSLPRALNEK 132
           ++   + + +   ++ R  +  K++  +L+ +    ++ +  ++ L+ K     + L + 
Sbjct: 62  WLILLKEKGMKAATINRKRASFKAYCGFLRAKGKIKDNPVSYVKKLQDKIQFEKKILTKD 121

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + + L++ +         +   R++ I+ +L   G+RI E   +  ++I        + G
Sbjct: 122 EIIKLLETMNKLYVDNKNYNTCRDNLIINILIFTGMRIHEIEKMNIKDINFSNGDFEVIG 181

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPF----DLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           K    R V L   V K   ++            N +    LF       L     +R + 
Sbjct: 182 KRKLKRNVGLNEQVLKMYRDFLYFRNQIEGKKDNKDSTNALFLSKNNSRLTTRSIERLVE 241

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGG 307
           +  +   LP   T H+ +HSF + +   G  L  I    G+  + T  + Y + N  +  
Sbjct: 242 KALKLAELP-HVTPHSFKHSFVSLMSETGVKLEEIGKFTGNKSIETMYRHYMHQNKDSNT 300

Query: 308 DWMME 312
             M E
Sbjct: 301 KKMTE 305


>gi|90020074|ref|YP_525901.1| XerC/CodV family integrase/recombinase [Saccharophagus degradans
           2-40]
 gi|89949674|gb|ABD79689.1| Integron integrase [Saccharophagus degradans 2-40]
          Length = 373

 Score =  156 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 70/311 (22%), Positives = 118/311 (37%), Gaps = 61/311 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           R L+  T ++Y      F+ F          +    +L+   + A++S     +     S
Sbjct: 26  RQLAYKTEKTYCYWIADFIRFN--------NMVHPDELTPEHVDAYLSSLAIKRNCSVNS 77

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
            K +L+ +    K   KR++      L      K   LP   +  +A+ ++ +       
Sbjct: 78  QKTALNALSYLFKRYLKRELGD----LAYTPSSKHKKLPTVFSHDEAMRVISH------- 126

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
               +   +  ++ L+YG GLR+ EA+ L  Q++      L I+  KG K R   L  S+
Sbjct: 127 ----LQGVHQVLVMLMYGSGLRVMEAVRLRVQDVDFANECLMIRESKGLKWRRTLLPKSL 182

Query: 207 RKAILEYY------------------------------------DLCPFDLNLNIQLPLF 230
            + +  Y                                         F  +     P  
Sbjct: 183 IEPLTIYRDIALARHKADLADGYGSVYLPNALNVKYPNASKEPAWQYMFPAHHLSTDPRS 242

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +R   +     QR ++   +   +      HT RHSFAT+LL  G D+R+IQ +LGH 
Sbjct: 243 GVLRRHHMGEQSVQRVVKIALKEARIYKKAGCHTFRHSFATNLLRAGTDIRNIQEMLGHT 302

Query: 291 RLSTTQIYTNV 301
            +STTQIYT+V
Sbjct: 303 DISTTQIYTHV 313


>gi|291521086|emb|CBK79379.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 340

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 74/322 (22%), Positives = 127/322 (39%), Gaps = 22/322 (6%)

Query: 20  NWLQ-NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++L   L  +   S  T+++Y      F  ++    +  I            +  ++   
Sbjct: 17  DFLSCYLPCQAARSIHTIETYRDGLTVFRRYITNVRKISIKKFLFTDCISELMLDYLGYL 76

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL---NMRNLKKSNSLPRALNEKQAL 135
            +Q     +    L+ ++++L Y     I+ +S  L   ++  LK+         EKQ +
Sbjct: 77  NSQGCEASTCNNRLAALRAYLWYASDMDISLQSIALSASHVPFLKEPKK------EKQII 130

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLRIQGKG 194
              D   L  +        R+  I+ LLY   +RI+E L L   ++      ++ I GKG
Sbjct: 131 QDEDMKALLAAPPDTQKGNRDRMIMILLYDTAIRITELLELKISSLKLTSVPSIHIHGKG 190

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI---RGKPLNPGVFQRYIRQLR 251
           DK R V +  +    + +Y     F   +    PLF         P++PG   R I +  
Sbjct: 191 DKERSVSITDATLSHLKKYL--RQFLSEMLPNQPLFYMKIKGSIAPMSPGNVSRIINKYA 248

Query: 252 RYL-----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
             +      LP     H  R + AT L  NG +L  I  ILGH    TT+IY   + +  
Sbjct: 249 DAIRPEHPNLPKHLHCHMFRRTRATGLYRNGVELEMISVILGHSSTETTRIYATPSIEML 308

Query: 307 GDWMMEIYDQTHPSITQKDKKN 328
           G+ M    + T P  T + ++N
Sbjct: 309 GEAMNTA-NSTIPDETPEWEEN 329


>gi|291300674|ref|YP_003511952.1| integrase family protein [Stackebrandtia nassauensis DSM 44728]
 gi|290569894|gb|ADD42859.1| integrase family protein [Stackebrandtia nassauensis DSM 44728]
          Length = 345

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 113/293 (38%), Gaps = 14/293 (4%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  T  +Y  D       +A     +        LS + +R   +     +    S+ R+
Sbjct: 20  SPHTTAAYRRDLLAVAEVVAAEVGCETGRVDCGGLSVSVMRRAFAGFSASR-AKSSIGRA 78

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN-EKQALTLVDNVLLHTSHETK 150
            S   +F  +L    I   + +  +   K +  LP+ L  E     L++ ++        
Sbjct: 79  WSVWNAFFSFLVGEGIVEGNPMSGVARPKAARPLPKPLRGEDAPDRLLEALMSGARAGRH 138

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVR 207
               R+ A++ +L   GLR SE L+L   ++       R+    GKG   R+VP+   + 
Sbjct: 139 PWPQRDVAVVAVLLLTGLRSSELLALRAGDVAGGAGERRLVVRDGKGGADRVVPVEGPLE 198

Query: 208 KAILEYYDLCP-----FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT- 261
             + +Y              L    PLF   RG+ L     Q  +RQ  R+ G+  +   
Sbjct: 199 VLLADYLASRRGRFPGGRWPLAPSEPLFVDHRGEALTRNQLQYLVRQCYRFAGVDDAVQR 258

Query: 262 ---AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               H LRH+FAT + ++G     +  +LGH  L+ +Q Y  V  +   D   
Sbjct: 259 GALVHALRHTFATRVGASGASAMEVMELLGHRSLNASQGYLGVTGRELRDAAR 311


>gi|325067049|ref|ZP_08125722.1| integrase family protein [Actinomyces oris K20]
          Length = 236

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 52/216 (24%), Positives = 93/216 (43%), Gaps = 2/216 (0%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRAFISKR 78
           ++   L ++R LS  T+++Y  D    L FL     +   + T +  L   ++R +++  
Sbjct: 20  SYRSYLALQRDLSAHTVRAYLVDISDLLSFLGVGEGDAEPVDTALATLDLADLRDWLAAM 79

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   +L R  + +++F  +  +  + T      +R  +  N LP  L  +QA  L+
Sbjct: 80  AASGHSRATLARRSASVRTFSSWAFETGLLTSDVAARLRAPRVDNRLPGVLTTQQASQLL 139

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                  S     +  R+ AI+  LY  G+R+SE + L   ++   Q TLR+ GKG K R
Sbjct: 140 KTASDLASDG-HVLAVRDLAIVETLYATGVRVSELVGLDVADLDHSQRTLRVLGKGRKER 198

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
            VP      +A+  +         ++    LF G R
Sbjct: 199 TVPYGLPAARALEAWLHRRGEICAVDAGGALFLGAR 234


>gi|268609386|ref|ZP_06143113.1| putative integrase [Ruminococcus flavefaciens FD-1]
          Length = 328

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 70/316 (22%), Positives = 132/316 (41%), Gaps = 38/316 (12%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
            N   E  + E+L E   +L    IE G S+ +L  Y       L  +          + 
Sbjct: 42  TNAKEETNNDEILSE---FLSAKRIE-GCSEKSLNYYSKTITAALDSIG---------KG 88

Query: 63  IRQLSYTEIRAFISKRRTQKIGDR----SLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
           I+ ++  ++RA+++  + +K   +    +++R LS   SF  +L+      +S +  + N
Sbjct: 89  IKHITTDDLRAYLTDYQAEKKSSKVTMDNIRRILS---SFFSWLEDEDYIIKSPVRRIHN 145

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           +K S ++     ++    + DN           ++ R+ A++ +L   G+R+ E + L  
Sbjct: 146 VKTSKTIKETYTDENLELMRDNC----------VELRDLAMIDMLASTGMRVGEMVLLNR 195

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GK 236
            +I  ++    + GKGDK R+V      +  +  Y          +    LF  +R   K
Sbjct: 196 SDIDFNERECVVVGKGDKERMVYFDARTKLHLQSYLASR-----TDSDSALFVSLRSPHK 250

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L  G  +  +R++ R LG+      H  R + AT  +  G  +  +Q +LGH R+ TT 
Sbjct: 251 RLTIGAIELRLREMGRKLGISK-VHPHKFRRTLATMAIDKGMPIEQLQRLLGHQRIDTTL 309

Query: 297 IYTNVNSKNGGDWMME 312
            Y  V   N      +
Sbjct: 310 QYAMVKQSNVKLAHRK 325


>gi|34763136|ref|ZP_00144105.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27887199|gb|EAA24301.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 290

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 60/286 (20%), Positives = 114/286 (39%), Gaps = 12/286 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + K  ++++  LE E      T+ S   D   FL +L      K  I T+ +L    I+ 
Sbjct: 7   IEKAIKDFVYYLEFEENKKNNTVISIRKDLNNFLEYL-----NKKNIITLDKLDELIIKE 61

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++++ +   + + +  R LS IK F KYL    +  +   + +   K      + LN  +
Sbjct: 62  YLTELKDFDLSNSTYNRRLSSIKKFYKYLINNNLKEKGKEILIEGKKSDEKKIQYLNSDE 121

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L + +      E  +   R+  +  LLY  G+ ++E LSL   N   ++  + +  K
Sbjct: 122 IKILREEM-----KEESFNFLRDRLMFELLYSSGMTVAELLSLGELNFNLEKREIYLL-K 175

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
               +++    + ++  L++           N    +F       L     +R I +   
Sbjct: 176 NRISKVLYFSQTCKEVYLKFLIAKKEKFKEDNNTNIIFVNNSNMRLTDRSVRRLINKYSE 235

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              LP   + +TLRHSF  ++L NG     +  +L    +    IY
Sbjct: 236 KANLPKEVSPYTLRHSFCIYMLKNGMPKEYLAKLLDLKSIGLLDIY 281


>gi|319948060|ref|ZP_08022234.1| site-specific tyrosine recombinase XerC [Dietzia cinnamea P4]
 gi|319438299|gb|EFV93245.1| site-specific tyrosine recombinase XerC [Dietzia cinnamea P4]
          Length = 177

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 89/177 (50%), Gaps = 5/177 (2%)

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           + E   +  R+  ++ LLY CG+R++E   L   ++  ++  LR+ GKGD+ R VP    
Sbjct: 5   AAEGDPLAVRDRLVVELLYSCGIRVAELCGLDVDDVDAERRLLRVIGKGDRERAVPYGAP 64

Query: 206 VRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             +A+  + D     L N      L  G RG  L+P   +R + ++          + H 
Sbjct: 65  ADRALRAWLDTGRPALTNARSGPALLLGARGGRLDPRAARRIVNEVSEATPGAPRVSPHA 124

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           LRHS ATHLL  G DLR +Q +LGH   +TTQIYT+V+++     +   Y   HP  
Sbjct: 125 LRHSSATHLLEGGADLRHVQELLGHSTPATTQIYTHVSAER----LRAAYRGAHPRA 177


>gi|88704224|ref|ZP_01101938.1| site-specific recombinase IntIA [Congregibacter litoralis KT71]
 gi|88701275|gb|EAQ98380.1| site-specific recombinase IntIA [Congregibacter litoralis KT71]
          Length = 330

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 73/328 (22%), Positives = 129/328 (39%), Gaps = 63/328 (19%)

Query: 20  NWLQNLE-IER--GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
            +L  L    R  GL+  T Q+Y    R++++F           Q    L    I  F++
Sbjct: 14  RFLDQLRQHIRSTGLAYRTEQTYVHWVRRYILFHKK--------QHPGSLGAKHIEQFLN 65

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               +     + + +L+ +    +      +      L  +  + +  LP   +  +   
Sbjct: 66  HLTVRSCSVSTQRVALNALVYLYRKFLAVDVGD----LEFKPARANRRLPVVYSRSEVAA 121

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGD 195
           ++             +   +  ++ L+YG G+R +E LSL  ++I  D + + ++ GKG+
Sbjct: 122 IL-----------SKLKGVHRLMVALMYGSGMRSAELLSLRVKDIDFDSNNIIVRSGKGN 170

Query: 196 KIRIVPLLPSVR----------------------------KAILEYYDLCPFDLNLNIQL 227
           K R   L   +                              A+   Y     +       
Sbjct: 171 KDRSTMLPQRLVPALKRQICTVELLHAQDLADGFGAVYLPDALERKYPNAAEETAWQFLF 230

Query: 228 PLFR--------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
           P  R         +R   L+P    R IR+  R  G+     +H+ RHSFATHLL +G D
Sbjct: 231 PASRIGRDPRSGVLRRHHLHPTALTRQIRRAVRNAGIHKPARSHSFRHSFATHLLEDGYD 290

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           LR+IQ +LGH  ++TT+IYT+V ++ G 
Sbjct: 291 LRTIQELLGHSDITTTEIYTHVVNRGGR 318


>gi|91214773|ref|ZP_01251746.1| tyrosine type site-specific recombinase [Psychroflexus torquis ATCC
           700755]
 gi|91187200|gb|EAS73570.1| tyrosine type site-specific recombinase [Psychroflexus torquis ATCC
           700755]
          Length = 379

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 131/294 (44%), Gaps = 37/294 (12%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRS 87
           +G SK T+ +Y+   + F  +           Q+++ ++  +I  ++ +  ++ KI + +
Sbjct: 105 KGFSKNTVDNYKSSLKPFFKYFEN--------QSLKSVTKEQIEGYVFELISKYKISESA 156

Query: 88  LKRSLSGIKSFLKYLK--KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
               ++ IK + ++     R+        N+   KKS  LP  L+  +   ++       
Sbjct: 157 QNTIINAIKCYYEHTLGLPREY------YNITRPKKSQDLPNILHINEVRRII------- 203

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLP 204
                  + ++  IL+ +YG GLR+ E + L   +I  ++  + I+  KG K R   L  
Sbjct: 204 ---NSPSNLKHKTILHTIYGAGLRVGELIRLRVVDIRSEEGYIFIKDSKGKKDRHTVLSK 260

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            + + + EYY +            LF G  G   +    Q   R+  +       +T HT
Sbjct: 261 HLLELLREYYKIY------KPAYWLFEGQTGGQYSSTSIQSIYRKAVKETNGNPWSTPHT 314

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGDWMMEIYD 315
           LRHSFATHL+  G  LR IQ+ LGH    TT+IYT V   N+K     +  +Y+
Sbjct: 315 LRHSFATHLMERGTSLRHIQAALGHNSSKTTEIYTRVLAINNKTIKSPLDTMYE 368


>gi|182420352|ref|ZP_02951578.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum 5521]
 gi|237668584|ref|ZP_04528568.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182375796|gb|EDT73391.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum 5521]
 gi|237656932|gb|EEP54488.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 333

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 50/308 (16%), Positives = 124/308 (40%), Gaps = 30/308 (9%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           ++V+ ++ ++   +L   ++E GLS  TL +Y+    +  ++           + +  +S
Sbjct: 52  DLVASDIEEKASLYLACKKLE-GLSSKTLYNYKLFLIKLNMYFT---------KPVSTIS 101

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
             ++R F++    +     +    ++ +K+F  +L+  +   ++    ++  K    + +
Sbjct: 102 TMDLRMFLAVL-GKGKQASTTNGYITYLKNFFGWLQNEEYILKNPAAKLKQTKVPKVILQ 160

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
               +    L +  +                +  LL     RISE   +  ++I   + +
Sbjct: 161 GYKAENLEKLREACVTEKQ----------KCLFELLDSTACRISEIDEIKIEDINWQEQS 210

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQR 245
           + + GKG+K R+V      +  +  Y            +  +F   +   + +     Q 
Sbjct: 211 IIVTGKGNKQRVVYFSTKAKLHLKAYITGR-------EEGHVFVSDKAPHQHIGVRALQL 263

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            + +++   G+      H  R + AT+LL++G  ++ +Q ILGH     TQ Y  ++ +N
Sbjct: 264 IVAKIKEKAGVTEKVHCHKFRRTQATYLLNSGMTIQGVQKILGHTSPDVTQRYAQLSQEN 323

Query: 306 GGDWMMEI 313
             +    +
Sbjct: 324 LKNEYKRL 331


>gi|251779032|ref|ZP_04821952.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083347|gb|EES49237.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 335

 Score =  155 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 57/306 (18%), Positives = 124/306 (40%), Gaps = 24/306 (7%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           ++V+ ++ ++   +L   ++E GLS  TL +Y+    +  ++           +    + 
Sbjct: 52  DLVTSDIEEKATLYLACKKLE-GLSPKTLNNYKLFLIKLNMYFT---------KPCSTIG 101

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
             ++R F++    +     ++   ++ +K+F  +L+  +   ++    ++  K    + +
Sbjct: 102 TMDLRMFLA-LLGKGKQPSTVNGYITCLKNFFGWLQNEEYIIKNPAFRLKQTKVPKVVRQ 160

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
               +    L +                  A+  LL     RISE  ++   +I   + +
Sbjct: 161 GYKAENLEKLREACKTERE----------KALFELLDSTACRISEIQNIKLPDINWHEKS 210

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           +++ GKG K RIV      + A+  Y      + N       F+      +     Q  I
Sbjct: 211 IKVLGKGSKERIVYFSTRAKLALENYIKDRSDNNNSLFISKKFKNKT---IGVRSLQNII 267

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +++    G+     AH  R + AT LL+ G  +  +Q ILGH   +TTQIY  ++ +N  
Sbjct: 268 KKIYERSGVTERVYAHKFRRTQATRLLNQGMRIEGVQGILGHTTPTTTQIYAQLSQENLK 327

Query: 308 DWMMEI 313
           +    +
Sbjct: 328 NEYRRL 333


>gi|74317233|ref|YP_314973.1| integron integrase [Thiobacillus denitrificans ATCC 25259]
 gi|74056728|gb|AAZ97168.1| integron integrase [Thiobacillus denitrificans ATCC 25259]
          Length = 326

 Score =  155 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 74/327 (22%), Positives = 126/327 (38%), Gaps = 63/327 (19%)

Query: 22  LQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           L  +  E   R  S  T QSY    R++++F               ++   E+R F+S  
Sbjct: 14  LDRVRAEIRVRHYSLRTEQSYVDWARRYILFHQKRHP--------AEMGAAEVREFLSHL 65

Query: 79  R-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + +   +  ++ S +    + + K ++        +   K +  LP  L + +   L
Sbjct: 66  AVERNVSASTQNQAKSALLFLYREVLKIELPWLD---EVVVAKSAKRLPVVLTQVEVRAL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDK 196
           ++ +                 +  LLYG G+R+ E L L  +++   +  + ++ GKG+K
Sbjct: 123 LNAM-----------SGTMGLVASLLYGTGMRLLEGLRLRVKDVEFSRREIIVREGKGNK 171

Query: 197 IRIVPLLPSVR------------------------------------KAILEYYDLCPFD 220
            R+  L  ++                                      A   +     F 
Sbjct: 172 DRVTVLPENLILPLKAHLEKVRTLHERDLEAGYGAVYLPDALAAKYPNAARAWGWQYVFP 231

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
             +    P     R   +     QR +R+  R  GL    T H LRHSFATHLL  G D+
Sbjct: 232 SPVRAVDPRSGVERRHHVYETSVQRAVREAARAAGLHKPVTPHVLRHSFATHLLQAGYDI 291

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGG 307
           R++Q +LGH  +STT IYT+V +K G 
Sbjct: 292 RTVQELLGHKDVSTTMIYTHVLNKGGR 318


>gi|312126649|ref|YP_003991523.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
 gi|311776668|gb|ADQ06154.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 283

 Score =  155 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 71/302 (23%), Positives = 136/302 (45%), Gaps = 22/302 (7%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ++E  NWL    + +G  + T ++Y      FL + +   + +   + +       IR +
Sbjct: 1   MQEFFNWL----LGKGKMESTAKTYIRAVENFLKWYSESYDREFDGKVL----PLHIRNY 52

Query: 75  ISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN--MRNLKKSNSLPRALNE 131
            S   T +K+  +++  +LS IKS+  +L ++ +   + +L+    ++++    P  L  
Sbjct: 53  RSYLMTVKKLNAKTINNNLSAIKSYCDFLVEKGVIETNPVLDDYFIDVQEPGVSPAKLEN 112

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           K    L + V+ + S         + AI Y L   G+R+SE  ++   +I+ D+  +   
Sbjct: 113 KDFNKLEEAVVHYGSAR-------DIAIFYTLAYTGVRVSELCNIRLNDIVKDELIIY-Y 164

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG K R +PL  +VR+AI  +          +    LF   RG  L+     R I++  
Sbjct: 165 GKGGKQRKIPLNRTVREAIDNWLKER-GKYKYSHLDYLFISERG-KLDRSTVYRIIKEYC 222

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R   +      H LRH F    L  G  +  + ++ GH R++TTQ+Y N + +   + + 
Sbjct: 223 RIAKIE-PIGPHQLRHYFCKRALEKGFTITEVAALAGHSRITTTQVYINPSLQELKEKIE 281

Query: 312 EI 313
            +
Sbjct: 282 RL 283


>gi|332526187|ref|ZP_08402322.1| integrase/recombinase [Rubrivivax benzoatilyticus JA2]
 gi|332110027|gb|EGJ10655.1| integrase/recombinase [Rubrivivax benzoatilyticus JA2]
          Length = 297

 Score =  155 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 66/281 (23%), Positives = 114/281 (40%), Gaps = 52/281 (18%)

Query: 59  TIQTIRQLSYTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
            ++    ++  E+ AF+      + +   S +++LS +      +  + +        + 
Sbjct: 12  GLRHPATMAGPEVAAFLCHLAAERGLSVSSHRQALSALLFLYGKVLGQSLPWMD---EIG 68

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
                  LP  L+  +   ++             +D     +  LLYG GLRI+EAL L 
Sbjct: 69  RPVPKRRLPVVLSPAEVAAVL-----------ARLDGTCRLLGELLYGTGLRITEALQLR 117

Query: 178 PQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------ 212
            +++   Q  + ++ GKG K R+V L  ++   + +                        
Sbjct: 118 VKDVDFAQRAILVRAGKGGKDRVVMLPAALEAPLRDQLRAVHAVWAEDAAAGRAGVQLPD 177

Query: 213 ------------YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
                       +     F    +   P    +R   L PG FQR   +  +  G+    
Sbjct: 178 ALERKYPRAGASWAWFWVFPQGRHSADPRSGVVRRHHLVPGSFQRAFARALQAAGVAKPA 237

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T HTLRHSFATHLL +G D+R++Q +LGH  ++TT IYT+V
Sbjct: 238 TPHTLRHSFATHLLQSGSDIRTVQELLGHADVATTMIYTHV 278


>gi|160874309|ref|YP_001553625.1| integrase family protein [Shewanella baltica OS195]
 gi|217972349|ref|YP_002357100.1| integrase family protein [Shewanella baltica OS223]
 gi|160859831|gb|ABX48365.1| integrase family protein [Shewanella baltica OS195]
 gi|217497484|gb|ACK45677.1| integrase family protein [Shewanella baltica OS223]
 gi|315266542|gb|ADT93395.1| integrase family protein [Shewanella baltica OS678]
          Length = 287

 Score =  155 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 124/292 (42%), Gaps = 36/292 (12%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q +   + + RG S  T  +Y     Q   +           Q +  ++  ++ A+   
Sbjct: 5   LQQFHDEIRL-RGYSARTRSAYLRAITQLQHYAN---------QPLDSITDEQLTAYFRY 54

Query: 78  RR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               +     +LK  L+GI  F +++  R        + +   K+ + LP+ L+ +    
Sbjct: 55  LNLERHHSRATLKLQLNGIHFFYEHVLGRDF-----TVQLSLPKRPHKLPQLLSCQDIAA 109

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195
           L+ +            + +  A+L L YGCGLR+SE   +   +I   +  L++ QGKG 
Sbjct: 110 LLCHC----------QNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGA 159

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG---KPLNPGVFQRYIRQLRR 252
             R+V + P++   + +Y+              LF         PL+   F++ + +  R
Sbjct: 160 YDRLVIISPTLLTLLRQYWRAYH------PVEWLFASTYHDVVYPLHESTFRKALAKAAR 213

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              +    + H+LRH++ATH L  G  L  +Q+ LGH  + +T+ Y + + +
Sbjct: 214 LASITKPCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPE 265


>gi|90578175|ref|ZP_01233986.1| hypothetical protein VAS14_14029 [Vibrio angustum S14]
 gi|90441261|gb|EAS66441.1| hypothetical protein VAS14_14029 [Vibrio angustum S14]
          Length = 296

 Score =  155 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 127/287 (44%), Gaps = 29/287 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +  L +L ++ G    T+ +Y    R+    L          ++   L+  +++ + ++
Sbjct: 13  YEQHLIHLTLQ-GKRPATIDAYSRALRRITHQLD---------KSPDTLTTDDLKRYFTQ 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     ++K + +G++ F K++ +R        LN+       +LP  L   +   L
Sbjct: 63  L-IKTHSWSTVKINRNGLQFFFKHVLQRDW----EWLNIVKPPHVKTLPDILTPTEVSLL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDK 196
           ++               R       LY  GLR+ E L+LT  NI   +  + I+ GKG K
Sbjct: 118 INAT----------SQLRYQVFFLTLYSLGLRLGEGLNLTVGNIDSHRMLVHIRQGKGGK 167

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R +PL      A+  Y+       N +   P    +    ++ G  Q+ ++ + +  G+
Sbjct: 168 DRFIPLPRRTLYALRYYWQTH---KNSHYLFPSQFNVNHTVMDRGGVQKAMKAVIKSCGI 224

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             S + H LRHS+ATHLL  G DLRS+Q +LGH  L+TT  YT++  
Sbjct: 225 TKSISPHNLRHSYATHLLERGLDLRSVQHLLGHNSLNTTAKYTHLTD 271


>gi|255690132|ref|ZP_05413807.1| integrase/recombinase, phage integrase family [Bacteroides
           finegoldii DSM 17565]
 gi|260624416|gb|EEX47287.1| integrase/recombinase, phage integrase family [Bacteroides
           finegoldii DSM 17565]
          Length = 327

 Score =  155 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 57/296 (19%), Positives = 111/296 (37%), Gaps = 25/296 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI-S 76
             ++L    +E G S  ++  Y       +  +          + IR ++  ++R ++  
Sbjct: 53  IDSFLSAKRVE-GCSDKSIHYYRSTLNNAIRKIE---------KNIRHITTDDLRNYLND 102

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            ++T      ++      + SF  +L+      +S +  +  +K   ++    +++    
Sbjct: 103 YQQTSGATKVTVDNIRRILSSFFSWLEDEDYIVKSPVRRIHKVKVGKTVKETYSDEALEQ 162

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           + D+              R+ A++ LL   G+R+ E + L   +I  +     + GKGDK
Sbjct: 163 MRDHCE----------GIRDLALIDLLASTGMRVGELVKLNRNDIDFENRECIVTGKGDK 212

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R V      +  +  Y      D   N  L +        L     +  +R+L R L +
Sbjct: 213 QRRVYFDARTKIHLQRYLAERIDD---NPALFVSLLAPYDRLQISGVEIRLRRLGRELNI 269

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           P     H  R + AT  +  G  +  +Q +LGH  L TT  Y  VN  N      +
Sbjct: 270 PK-VHPHKFRRTLATMAIDKGMPIEQVQHLLGHQSLDTTLQYAMVNQTNVKMSHRK 324


>gi|302345835|ref|YP_003814188.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302149177|gb|ADK95439.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 330

 Score =  155 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 65/313 (20%), Positives = 123/313 (39%), Gaps = 31/313 (9%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+ NN    VS E L E   +L   ++E G +  T++ Y     Q    +          
Sbjct: 45  MQENN----VSNERLLEI--FLSAKQVE-GCTTPTIKYYGSTINQLFKKM---------P 88

Query: 61  QTIRQLSYTEIRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           + +   +  +IRA+++  +R  K    ++        SF  +L+      +S +  +  +
Sbjct: 89  KKVTNYTTEDIRAYLAVFQRKHKSSKVTIDNIRRIFSSFFSWLEDEDYIIKSPVRRIHKV 148

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K    +   L ++    L DN              R+ A++ LL   G+R+ E + L  +
Sbjct: 149 KTGTQIKEVLTDENLEQLRDNC----------TRVRDLAMIDLLASTGMRVGELVKLNRE 198

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           +I  ++    + GKG+K RIV      +  + +Y        + N  L +        L 
Sbjct: 199 DINFNERECIVFGKGNKERIVYFNARAKIHLQQYLAER---KDRNKALFVSLAKPHNRLQ 255

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               +  +R++ R   + +    H  R + AT  +  G  +  +Q +LGH ++ TT  Y 
Sbjct: 256 ISGVETRLRKIGRLSKI-VRVHPHKFRRTLATMAIDKGMPVEQVQKLLGHVKIDTTMHYA 314

Query: 300 NVNSKNGGDWMME 312
            VN  N      +
Sbjct: 315 MVNQTNVKLSHRK 327


>gi|220919754|ref|YP_002495057.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|219952174|gb|ACL62565.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 286

 Score =  155 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 122/293 (41%), Gaps = 32/293 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           R+  ++++ I R   + T + Y    R+F IFL          +        ++R +   
Sbjct: 10  RRRMIEDMTI-RRFGEHTKRDYIRQIREFTIFLG---------RAPDLAEPEDLRRYQLH 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             +       +  +++ ++ F      R    +     +  +     LP  L+ ++   L
Sbjct: 60  MASLGASYARMNLAITALRFFFHVTLGRSGFAD----RLARIPTPERLPVVLSPEEVALL 115

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
           + +              +  A L + YGCGLR+SE  +L   +I   +  +R+ QGKG K
Sbjct: 116 LAH----------APSLKYRAALSVAYGCGLRVSEIANLKVTDIDSARMLIRVEQGKGRK 165

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLG 255
            R V L P +   + +++ +         +  LF G +  +P+      R          
Sbjct: 166 DRFVMLSPDLLDLLRQWWRV------KRPRGWLFPGQQPAQPITTRQLNRACHAAAEAAR 219

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +    + HTLRHSFATHLL    D+R IQ +LGH +L TT +YT V  K   +
Sbjct: 220 IDKRVSMHTLRHSFATHLLERKTDIRVIQVLLGHRKLDTTAVYTRVALKAIRE 272


>gi|298241379|ref|ZP_06965186.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297554433|gb|EFH88297.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 293

 Score =  155 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 57/299 (19%), Positives = 120/299 (40%), Gaps = 26/299 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L +L   R     T+++Y  D R FL               + +++   I+ F+  
Sbjct: 8   VEQFLASLRA-RHAPANTIKAYSHDLRHFLA---------AAPTFLVEVTAPLIQEFL-- 55

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +        +  R  S + +F  +  ++++ + + +  +  + +    PR L  ++   +
Sbjct: 56  QGDGHHSVATRGRRYSTLCTFYHWAIRQELVSSNPMERLDPITQPQKEPRPLAPEEVDKI 115

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGD 195
              +             R+  +  LLY  G+R+ EAL+L   ++    D   +R+ GKG 
Sbjct: 116 FKAI--------SPSRLRDRTLFMLLYETGVRVGEALALQYSDVTLAQDDEKIRVFGKGQ 167

Query: 196 KIRIVPLL--PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           + R V L   P   + +  +            +     G    PL+  V Q+  ++  + 
Sbjct: 168 RERTVMLTAAPQSIRLLRRHLKESHITSGSVFRGDPRYGGSPLPLDYTVVQKAWQKYCQA 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+  +   H LRHS A+ L+  G  + +++  +GH  L +T  Y  V+       ++E
Sbjct: 228 AGVQATI--HQLRHSRASQLIQAGVPVTTVRKQMGHRNLQSTLRYAEVDQATVKQDLLE 284


>gi|317131475|ref|YP_004090789.1| integrase family protein [Ethanoligenens harbinense YUAN-3]
 gi|315469454|gb|ADU26058.1| integrase family protein [Ethanoligenens harbinense YUAN-3]
          Length = 330

 Score =  155 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 123/298 (41%), Gaps = 25/298 (8%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  + ++    +E G S+ +L+ Y+   R  ++ +A         + +R++   ++R ++
Sbjct: 54  KLLEIFISAKRVE-GCSEKSLKYYDATIRHMIVDIA---------KPVREIDTGDLRIYL 103

Query: 76  S-KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +  ++ +     ++        SF  +L+      +S +  +  +K   ++    +++  
Sbjct: 104 ANYQKLRNSSKVTIDNMRRIFSSFFGWLEDEDYILKSPVRRIHKIKTEKTIKDTFSDEGL 163

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L D             + R+ A++ LL   G+R+ E + L  +++   +    + GKG
Sbjct: 164 EKLRDACD----------ELRDLAMVDLLASTGMRVGELVQLNREDMNFHERECLVLGKG 213

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K R+V      +  +  Y D    D   N  L +      + L  G  +  IR++ +  
Sbjct: 214 GKERMVYFDARTKIHLRNYLDSRSDD---NPALFVSLTSPHERLLIGGVETRIREIGKNA 270

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            L      H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN +N  +   +
Sbjct: 271 ALQK-VHPHKFRRTLATRAIDKGMPIEQVQRLLGHVKIDTTMHYAMVNQENVKNSHRK 327


>gi|197336974|ref|YP_002158308.1| site-specific recombinase IntIA [Vibrio fischeri MJ11]
 gi|197314226|gb|ACH63675.1| site-specific recombinase IntIA [Vibrio fischeri MJ11]
          Length = 327

 Score =  155 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 72/333 (21%), Positives = 130/333 (39%), Gaps = 64/333 (19%)

Query: 10  VSFELLKERQNWLQNLEI---ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           +  +L  + Q +   L I    R L+  T + Y      F+    + +++        ++
Sbjct: 3   IPLDLKPDSQRFTDQLRIFIRTRALAYNTEKQYIYWISCFIRHNNYTSKD--------EI 54

Query: 67  SYTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +  +I  ++      Q +   + K +L+ +    +   ++ +      L  +  KK+  L
Sbjct: 55  NAFDIPDYLEHLVVKQNVSPNTQKTALNALIFLCREYLQQSVDN----LEFKRSKKATKL 110

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P   +  +A+++++            ++     I  L+YG GLRI+EAL L   +I    
Sbjct: 111 PTVFSHSEAISVINE-----------LNHPTKLIAQLMYGSGLRINEALRLRVDDIDLIH 159

Query: 186 STLRIQ-GKGDKIRIVPLLPSVRKAILE-------------------------------- 212
            T+ I+ GKG+K R   L   +   +                                  
Sbjct: 160 KTITIRNGKGNKDRTTVLPEIIISELKTQLAFVKQQHKVDAINGDDEVYLPNAIAKKYPH 219

Query: 213 ----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
               Y     F      + P     R   +     Q+ +    + L +    ++HT RHS
Sbjct: 220 RAKSYGWQYVFPSKQISKDPRSGQRRRHHMLDRSVQKQVTNAIKKLEIDKKASSHTFRHS 279

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           FAT +L  GGDLR+IQ +LGH  + TTQIYT+V
Sbjct: 280 FATRILERGGDLRTIQELLGHSDIKTTQIYTHV 312


>gi|154498614|ref|ZP_02036992.1| hypothetical protein BACCAP_02604 [Bacteroides capillosus ATCC
           29799]
 gi|150272353|gb|EDM99547.1| hypothetical protein BACCAP_02604 [Bacteroides capillosus ATCC
           29799]
          Length = 285

 Score =  155 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 126/296 (42%), Gaps = 27/296 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + + L  + G S+ T+++Y    ++++ +      +++ +          +  +IS 
Sbjct: 9   LEGFCEYLCRQ-GKSENTVKAYCQGMKEYMRWHEETFGKRMKM-----FLRANVLDYISY 62

Query: 78  RRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--PRALNEKQA 134
             T + + +RS+   L+ + SF  YL     T E  +     LK   +   P  ++ ++ 
Sbjct: 63  LHTVKGLSNRSVNAKLASLHSFNLYLIAAGYTKEVVLDKQDYLKVQLAYASPSTVSREEV 122

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GK 193
                 +L  +         R+ AI+ +L   GLRISE L+L  ++I      ++++ GK
Sbjct: 123 ERFRQEILERS-------GVRDYAIVTILAYAGLRISECLALRVEDISLPAREIKVRHGK 175

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GDK+R+V     V  A+ EY    P   N      LF G     L      R   +    
Sbjct: 176 GDKMRVVYFGDKVVNAVREYLRNRPKTGNP----YLFPGRGDSHLTRSQVNRIFNEYSE- 230

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                S T HTLRH F ++ L NG  +  + +  GH  + TT +YTN   +   + 
Sbjct: 231 -----SITPHTLRHFFCSNALENGYTIADLANQAGHSNVHTTLLYTNPTREKMKEK 281


>gi|299144869|ref|ZP_07037937.1| integrase/recombinase, phage integrase family [Bacteroides sp.
           3_1_23]
 gi|298515360|gb|EFI39241.1| integrase/recombinase, phage integrase family [Bacteroides sp.
           3_1_23]
          Length = 330

 Score =  155 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 124/294 (42%), Gaps = 25/294 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +++   +IE G S+ TL  Y     + L+ L+           I  ++ ++IRA++S  +
Sbjct: 58  SFISAKKIE-GCSEKTLAYYRNTIERLLLTLSI---------AICHITTSDIRAYLSDYQ 107

Query: 80  TQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            +    + ++        SF  +L+      +S +  +  +K  + +   L+++Q   L 
Sbjct: 108 EEHQSSKVTMDNMRRIFSSFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQLR 167

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D+            + R+ A++ +L   G+R+ E + L  ++I   +    + GKG+K R
Sbjct: 168 DSC----------TNKRDLALIDILSSTGIRVGELVKLNREDIDFHERQCVVFGKGNKER 217

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IV      +  + +Y D    D   N  L +   +    L     +  IR L + L +P 
Sbjct: 218 IVYFNARTKLHLQQYLDERTDD---NPALFVSLHLPHTRLTISGVEVRIRDLGKSLSMPK 274

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
               H  R + AT  +  G  +  +Q +LGH R+ TT  Y  VN  N      +
Sbjct: 275 -VHPHKFRRTLATMAIDKGMPIEQVQRLLGHVRIDTTLHYAIVNQNNVKLAHKK 327


>gi|237801966|ref|ZP_04590427.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331024824|gb|EGI04880.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 318

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 69/277 (24%), Positives = 115/277 (41%), Gaps = 24/277 (8%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T ++Y+ D R F  F+     E+      R ++ + + A+ ++   + +   +++R L
Sbjct: 38  PRTRRAYQADLRDFCSFVGLAGAEE-----FRAVNRSHVLAWRAQLERRALSGATIRRKL 92

Query: 93  SGIKSFLKYLKKRK-ITTESNILNMRNLKKSN---SLPRALNEKQALTLVDNVLLHTSHE 148
           + + S   YL     +   + +  +   K        P AL + QA  L+D         
Sbjct: 93  AALASLFDYLLNNNALAGGNPVHGVARPKVETNEGKTP-ALGDDQAKRLLD-----APDA 146

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSV 206
                 R+ AIL +L   GLR  E   L   ++ + +    LRI GKG KIR +PL P  
Sbjct: 147 ESLQGVRDRAILAVLLYHGLRREELSLLQTGDLQERRGVKHLRIHGKGGKIRYLPLHPVA 206

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLP-LSTT 261
            + I  Y  +   D  L     LFR  RGK     +        + +      +      
Sbjct: 207 AERIYVYL-VRDGDRALTP-GALFRSQRGKTSGTGITGKGVYGVVTKWASAAQIRVDGLG 264

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            H LR + AT+ L +  D+  +Q  LGH  +STT++Y
Sbjct: 265 VHGLRATAATNALEHDADIAKVQIWLGHANISTTRLY 301


>gi|154504412|ref|ZP_02041150.1| hypothetical protein RUMGNA_01916 [Ruminococcus gnavus ATCC 29149]
 gi|153795341|gb|EDN77761.1| hypothetical protein RUMGNA_01916 [Ruminococcus gnavus ATCC 29149]
          Length = 237

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 93/232 (40%), Gaps = 10/232 (4%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET-- 149
           +S ++SF  Y  K +I  ++  L +   K        L+  +  +L+D V       T  
Sbjct: 1   MSALRSFYGYYFKHQIIEKNPTLFVDMPKLHEKAIVRLDTDEVASLLDFVEHGGDELTGQ 60

Query: 150 -----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
                +    R+ AI+ LL G G+R+SE + L  Q++    + + +  KG    ++    
Sbjct: 61  KKVYYEKTKNRDLAIITLLLGTGIRVSECVGLDIQDVDFKNNGITVVRKGGNEMVIYFGE 120

Query: 205 SVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            V  A+ +Y              +  LF   + + +     +  +++  R +      T 
Sbjct: 121 EVEHALKQYLYTTREAATPLPGHENALFLSTQRRRMGVQAVENMVKKYARQVTPNKKITP 180

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           H LR ++ T L    GD+  +  +LGH  ++TT + Y  ++          +
Sbjct: 181 HKLRSTYGTTLYKETGDIYLVADVLGHKDVNTTKKHYAAIDEDRRRMAAKAV 232


>gi|153805908|ref|ZP_01958576.1| hypothetical protein BACCAC_00148 [Bacteroides caccae ATCC 43185]
 gi|149130585|gb|EDM21791.1| hypothetical protein BACCAC_00148 [Bacteroides caccae ATCC 43185]
          Length = 328

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 55/293 (18%), Positives = 113/293 (38%), Gaps = 29/293 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI-S 76
            +N++   ++E G S  ++  Y       LI L          + +  ++  ++R ++ +
Sbjct: 54  VENFISAKKVE-GCSPNSIAYYRSTINNALIKLG---------KEVIHITTDDLRHYLNT 103

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            +        ++      + SF  +L++     +S +  +  +K   ++     ++    
Sbjct: 104 YQSESGASKVTVDNIRRILSSFFSWLEEENYIVKSPVRRIHKVKVGKTVKETYTDESLEL 163

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           + D+            + R+ A++ LL   G+R+ E + L   +I        + GKGDK
Sbjct: 164 MRDHC----------SNPRDLALIDLLASTGMRVGELVKLNRSDIDYHNRECIVTGKGDK 213

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--RGKPLNPGVFQRYIRQLRRYL 254
            R V      +  + +Y +        +    LF  +      L     +  +RQ+ + L
Sbjct: 214 QRKVYFDARTKIHLQKYINSR-----TDNNEALFVSLLAPYDRLQISGVEIRLRQMGKDL 268

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +P     H  R + AT  +  G  +  +Q +LGH  L TT  Y  VN  N  
Sbjct: 269 NIPK-VHPHKFRRTLATMAIDKGMPIEQVQHLLGHQSLDTTLQYAMVNQNNVK 320


>gi|12831423|gb|AAK02079.1| site-specific recombinase IntIA [Aliivibrio fischeri]
          Length = 327

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 73/333 (21%), Positives = 131/333 (39%), Gaps = 64/333 (19%)

Query: 10  VSFELLKERQNWLQNLEI---ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           +  +L  + Q +   L I    R L+  T + Y      F+    + +++        ++
Sbjct: 3   IPLDLKPDSQRFTDQLRIFIRTRALAYNTEKQYIYWISCFIRHNNYTSKD--------EI 54

Query: 67  SYTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +  +I  ++      Q +   + K +L+ +    +   ++ +      L  +  KK+  L
Sbjct: 55  NAFDIPDYLEHLVVKQNVSPNTQKTALNALIFLCREYLQQSVDN----LEFKRSKKATKL 110

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P   +  +A+++++            ++     I  L+YG GLRI+EAL L   +I    
Sbjct: 111 PTVFSHSEAISVINE-----------LNHPTKLIAQLMYGSGLRINEALRLRVDDIDLIH 159

Query: 186 STLRIQ-GKGDKIRIVPLLPSVRKAILE-------------------------------- 212
            T+ I+ GKG+K R   L  S+   +                                  
Sbjct: 160 KTITIRNGKGNKDRTTVLPDSIIPELKTQLAFVKQQHKMDAINGDDEVYLPNAIAKKYPH 219

Query: 213 ----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
               Y     F      + P     R   +     Q+ +    + L +    ++HT RHS
Sbjct: 220 RAKSYGWQYVFPSKQISKDPRSGQRRRHHMLDRSVQKQVTNAIKKLEIDKKASSHTFRHS 279

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           FAT +L  GGDLR+IQ +LGH  + TTQIYT+V
Sbjct: 280 FATRILERGGDLRTIQELLGHSDIKTTQIYTHV 312


>gi|289806186|ref|ZP_06536815.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 164

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 57/166 (34%), Positives = 87/166 (52%), Gaps = 2/166 (1%)

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D   L        +  R+ A+L ++YG GLR+SE + L  +++  D   + + GKG K R
Sbjct: 1   DVNRLLDIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKER 60

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            +P+  +    I  + DL    L  + +  LF    GK ++    Q+   +     GL  
Sbjct: 61  RLPIGRNAVTWIEHWLDLRG--LFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNS 118

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
               H LRHSFATH+L + GDLR +Q +LGH  LSTTQIYT+++ +
Sbjct: 119 HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQ 164


>gi|21229822|ref|NP_635739.1| site-specific recombinase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66766698|ref|YP_241460.1| site-specific recombinase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|12746334|gb|AAK07444.1|AF324483_1 site-specific recombinase IntIA [Xanthomonas campestris pv.
           campestris]
 gi|21111319|gb|AAM39663.1| site-specific recombinase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66572030|gb|AAY47440.1| site-specific recombinase [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 327

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 72/329 (21%), Positives = 134/329 (40%), Gaps = 63/329 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           R  S  T Q+Y    R+F++                Q+   E+ AF++   T+  +   +
Sbjct: 19  RHYSLRTEQAYVGWIRRFILANGKRHP--------AQMGQAEVEAFLTDLATRGQVSAGT 70

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++L+ +    + +   ++     + N+   K+   +P  L+ ++   L+         
Sbjct: 71  QNQALAALLFLYREILGLEL---PWMENLVRAKRPRRIPVVLSVEEVTRLL--------- 118

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
               ++     +  LLYG G+R+ E L L  +++   +  + ++ GKG K R VPL  S+
Sbjct: 119 --TMLEGACRLMAGLLYGSGMRLLECLRLRIKDVDMVRCEIVVRDGKGGKDRRVPLPRSL 176

Query: 207 RKAILEYYDLCPFDLNLNI-------------------------QLPLFRGIRGKPLNPG 241
           R  +++  +        ++                            LF G R   ++P 
Sbjct: 177 RGELMQQRERALLLHAADLAEGAGQVFLPHALARKYPSADVEPGWQYLFPGARRS-VDPR 235

Query: 242 VFQRYIRQLRRYL------------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
             +  +  +   +            G+    T HTLRHSFATH L  G D+R++Q +LGH
Sbjct: 236 SGRVGLHHVSEEIRQRAVHAARRRAGIDKPATCHTLRHSFATHPLEAGHDIRTVQELLGH 295

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             ++TTQIYT+V  + G   +    D  H
Sbjct: 296 KDVATTQIYTHVLGR-GASAVRSPLDGLH 323


>gi|168698681|ref|ZP_02730958.1| phage integrase family protein [Gemmata obscuriglobus UQM 2246]
          Length = 303

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 69/286 (24%), Positives = 124/286 (43%), Gaps = 24/286 (8%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T +++  D ++F ++ A    E   +  +     T+ R  +  RR +     ++ R+L  
Sbjct: 35  TRKAFTLDIKKFAVWFAEVNREPFRVGRVTMRDVTDFREHL--RREKGQAVSTVNRALVA 92

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           ++ +  +L ++     +  + ++ L++    P+ L   Q   L+  V L         D 
Sbjct: 93  VRRYFGWLAEQGHVASNPAVGVKELRRVQLAPKGLQRDQVRKLLREVELRQ-------DV 145

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQ--STLRIQ-GKGDKIRIVPLLPSVRKAIL 211
           R SA+ +LL   G RI + ++L  Q++M  +   T+  + GKG K R VPL    RK+I 
Sbjct: 146 RASAVFHLLLYTGCRIGDLVNLKLQDLMLTERSGTVVFRLGKGGKQRSVPLPLPARKSIQ 205

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
            Y D  P       +  +F G R  PL     +    +    +G+      H  RH+ A 
Sbjct: 206 AYLDTRPPV----KEQIVFIGER-GPLTDRGVRAMCDKYSALIGV--KLHPHLFRHTMAH 258

Query: 272 HLL-SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             L  N  DL ++  +LGH  L+TT  Y     +   D + +  D+
Sbjct: 259 QFLADNENDLVALAQLLGHENLNTTARYA----RRSHDQLADAADK 300


>gi|298375507|ref|ZP_06985464.1| integrase [Bacteroides sp. 3_1_19]
 gi|298268007|gb|EFI09663.1| integrase [Bacteroides sp. 3_1_19]
          Length = 330

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 62/296 (20%), Positives = 122/296 (41%), Gaps = 25/296 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             +++   +IE G S+ TL  Y     + L+ L+           I  ++ T+IR ++S 
Sbjct: 56  LNSFISAKKIE-GCSEKTLTYYRNTIERLLVTLSL---------AICHITTTDIRTYLSD 105

Query: 78  RRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            + +    + ++        SF  +L+      +S +  +  +K  + +   L+++Q   
Sbjct: 106 YQEEHQSSKVTIDNMRRIFSSFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQ 165

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L D+              R+ AI+  L   G+R+ E + L+ ++I   +    + GKG+K
Sbjct: 166 LRDSC----------TTKRDLAIIDFLSSTGIRVGELVKLSREDIDFHERQCVVFGKGNK 215

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+V      +  + +Y +      + N  L +        L     +  IR++ + L +
Sbjct: 216 ERVVYFNARTKLHLQQYLNERT---DSNPALFVSLNSPHSRLTISGVEVRIRKMGQALSM 272

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           P     H  R + AT  +  G  +  +Q +LGH R+ TT  Y  VN  N      +
Sbjct: 273 PK-VHPHKFRRTLATMAIDKGMPIEQVQRLLGHVRIDTTLHYAIVNQNNVKLAHKK 327


>gi|300872295|gb|ADK38975.1| IntI4 [Vibrio sp. V95(2010)]
          Length = 296

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 75/310 (24%), Positives = 128/310 (41%), Gaps = 61/310 (19%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGI 95
           ++Y     +++ F        +  +        E+  F++    Q  +  ++   +L+ +
Sbjct: 7   RAYLHWITRYIHFHNKKHPSLMGDK--------EVEEFLTYLAVQGKVATKTQSLALNSL 58

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
               K + K  ++ E   +  +  +    LP  L   +   L++            +D +
Sbjct: 59  SFLYKEILKTPLSLE---IRFQRSQLERKLPVVLTRDEIRRLLEI-----------VDPK 104

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR------- 207
           +   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V L   +        
Sbjct: 105 HQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQI 164

Query: 208 ----------------------KAILEYYDLCPFDLNLNIQLPLFR--------GIRGKP 237
                                  A+ E Y   P++   +   P F+         +R   
Sbjct: 165 ALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHH 224

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH  + TTQI
Sbjct: 225 MNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQI 284

Query: 298 YTNVNSKNGG 307
           YT+V   +  
Sbjct: 285 YTHVLDSSAS 294


>gi|294782271|ref|ZP_06747597.1| integrase/recombinase [Fusobacterium sp. 1_1_41FAA]
 gi|294480912|gb|EFG28687.1| integrase/recombinase [Fusobacterium sp. 1_1_41FAA]
          Length = 280

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 60/275 (21%), Positives = 114/275 (41%), Gaps = 12/275 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + K  +N++  LE E      T+ S   D  QFLI+L  +      I    +L    I+ 
Sbjct: 2   IEKSIKNFIYYLEFEENKKHNTVISIRKDLNQFLIYLNEH-----DIIDFNKLDELLIKE 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           + +K +T++I   +  R LS IK F KYL  + +  + + + + + K        L  ++
Sbjct: 57  YFTKLKTEEISASTFNRRLSSIKKFYKYLVDKGLKEKGSEILIESEKNDEKKIEYLTPEE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                 N++  T     +   R+  +  LLY  G+ ++E LSL   N   ++  + I  K
Sbjct: 117 I-----NLVRTTMEGENFNILRDRLMFELLYSSGMTVAELLSLGEVNFNLEKREIYIL-K 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRR 252
               + +    + +K  +++ +        +    + F     + L     +R I +   
Sbjct: 171 NKLSKTMYFSETCKKFYIKFLNSKKEKFKEDYNPNIIFNNNSNERLTDRSVRRLINKYAE 230

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
              L    + +TLRHSF  ++L NG     +  +L
Sbjct: 231 MANLNKEISPYTLRHSFCIYMLKNGMPKEYLARLL 265


>gi|160945433|ref|ZP_02092659.1| hypothetical protein FAEPRAM212_02955 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443164|gb|EDP20169.1| hypothetical protein FAEPRAM212_02955 [Faecalibacterium prausnitzii
           M21/2]
          Length = 357

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 65/311 (20%), Positives = 125/311 (40%), Gaps = 23/311 (7%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            +  + +  + + +   + + LS+ +L  Y    R F  FL        T Q I  ++  
Sbjct: 47  ANPTIQQAFERFQKYNRL-KNLSQGSLDFYVAKGRSFFRFLGD------TEQPINTITEE 99

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +  +I   + Q++ D ++  +L  +++FL +  ++    +     +R ++  + +    
Sbjct: 100 TVEDYIFYMKDQQLHDTTINTNLRMVRAFLYWCMEKGYLEKYP---IRLVRADDPIKEPY 156

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              +   L+      T     + + RN  I+  L G G R S  L+L   ++     T+ 
Sbjct: 157 TTDELQKLLKEPDCKT---CSFAEYRNWVIVNFLLGTGCRASTLLNLQIGDLDLFAGTVF 213

Query: 190 IQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            +  K    +IVPL  ++ K + EY +    D       PLF    G  +        I 
Sbjct: 214 FRHMKARNQQIVPLSKALVKIMEEYLEHRTSD----PTAPLFVSEYGNQMTLNSLGNAIW 269

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                 G+   T+ H  RH++A   +  GGD   +Q +LGH  L+ T+ Y  +      D
Sbjct: 270 NYNHSRGVEK-TSMHLFRHTYAKLYIQAGGDPFRLQKLLGHADLTMTRRYVAL----YAD 324

Query: 309 WMMEIYDQTHP 319
            +   YD  +P
Sbjct: 325 DLRANYDALNP 335


>gi|169825072|ref|YP_001692683.1| putative integrase [Finegoldia magna ATCC 29328]
 gi|167831877|dbj|BAG08793.1| putative integrase [Finegoldia magna ATCC 29328]
          Length = 327

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 63/312 (20%), Positives = 129/312 (41%), Gaps = 28/312 (8%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           E  ++ E  S +LL   +N+L    IE G S+ +L  Y    +     +          +
Sbjct: 40  ESYSVQEDTSEDLL---ENFLSAKRIE-GCSEKSLVYYRNTIQAMRDKVE---------K 86

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            +R++   ++R +++  + +K   + ++        SF  +L+      +S +  +  +K
Sbjct: 87  PVREIETNDLREYLTGYQKEKNSSKVTIDNIRRIFSSFFSWLEDEDYIIKSPVRRIHRVK 146

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
            + ++    +++   T+ D+            + R+ A++ +L   G+RI E + L  ++
Sbjct: 147 SATTIKETYSDENLETMRDSC----------SELRDLALIDILASTGMRIGELVHLNRKD 196

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I  ++    + GKG K R+V      +  + EY +    D   N  L +        +  
Sbjct: 197 INFEERECVVFGKGSKERMVYFDARTKIHLQEYLNSRKDD---NPALFVSLKAPYDRMKI 253

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           G  +  +R + R LG+      H  R + AT  +  G  +  +Q +LGH R+ TT  Y  
Sbjct: 254 GGIEARLRGIGRNLGIEK-VHPHKFRRTLATMAIDKGMPIEQLQQLLGHKRIDTTLQYAM 312

Query: 301 VNSKNGGDWMME 312
           V   N      +
Sbjct: 313 VKQSNVKIAHRK 324


>gi|59713846|ref|YP_206621.1| XerC/CodV family integrase/recombinase [Vibrio fischeri ES114]
 gi|59482094|gb|AAW87733.1| integrase/recombinase (XerC/CodV family) [Vibrio fischeri ES114]
          Length = 327

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 74/333 (22%), Positives = 131/333 (39%), Gaps = 64/333 (19%)

Query: 10  VSFELLKERQNWLQNLEI---ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           +  +L  + Q +   L I    R L+  T + Y      F+    + +++        ++
Sbjct: 3   IPLDLKPDSQRFTDQLRIFIRTRALAYNTEKQYIYWISCFIRHNNYTSKD--------EI 54

Query: 67  SYTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +  +I A++      Q +   + K +L+ +    +   ++ +      L  +  KK+  L
Sbjct: 55  NAFDIPAYLEHLVVKQNVSPNTQKTALNALIFLCREYLQQSVDN----LEFKRSKKATKL 110

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P      +A+++++            ++     I  L+YG GLRI+EAL L   +I    
Sbjct: 111 PTVFTHGEAISVINE-----------LNHPTKLIAQLMYGSGLRINEALRLRVDDIDLIH 159

Query: 186 STLRIQ-GKGDKIRIVPLLPSVRKAILE-------------------------------- 212
            T+ I+ GKG+K R   L  S+   +                                  
Sbjct: 160 KTITIRNGKGNKDRTTVLPESIIPELKTQLEFVKQQHKMDAINGDDEVYLPNAIAKKYPH 219

Query: 213 ----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
               Y     F      + P     R   +     Q+ +    + L +    ++HT RHS
Sbjct: 220 RAKSYGWQYVFPSKQISKDPRSGQHRRHHMLDRSVQKQVTNAIKKLEIDKKASSHTFRHS 279

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           FAT +L  GGDLR+IQ +LGH  + TTQIYT+V
Sbjct: 280 FATRILERGGDLRTIQELLGHSDIKTTQIYTHV 312


>gi|255527617|ref|ZP_05394479.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296187660|ref|ZP_06856054.1| site-specific recombinase, phage integrase family [Clostridium
           carboxidivorans P7]
 gi|255508689|gb|EET85067.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296047617|gb|EFG87057.1| site-specific recombinase, phage integrase family [Clostridium
           carboxidivorans P7]
          Length = 329

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 121/298 (40%), Gaps = 35/298 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++    +E G S+ +++ Y+      L  L          + ++ ++  ++R ++++   
Sbjct: 58  FICAKRVE-GCSEKSIKYYKSTIENMLRTLG---------KPVKHITTEDLRGYLAEYHK 107

Query: 81  Q----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           +    K+   +++R LS   +F  +L+      +S +  +  +K    +     ++    
Sbjct: 108 RSSCSKVSIDNIRRILS---TFFSWLEDENYILKSPVRRIHKIKTGKIVKEVYTDENLEI 164

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           + D+            + R+ AI+ LL   G+R+ E + L   +I  ++    ++GKGDK
Sbjct: 165 MRDSCK----------EIRDLAIIDLLNSTGIRVGELVKLNIDDIDFNERECIVEGKGDK 214

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--RGKPLNPGVFQRYIRQLRRYL 254
            R V      +  +  Y +       ++    LF  +      LN    +  +R L + L
Sbjct: 215 QRRVYFDARTKIHLQNYINSR-----VDNNRALFVSLIEPYNRLNISGVEIRMRSLGKKL 269

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            +      H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN  N      +
Sbjct: 270 NINK-VHPHKFRRTLATRAIDKGMPIEQVQQLLGHQKIDTTLQYAMVNQNNVKISHRK 326


>gi|229020853|ref|ZP_04177558.1| Integrase/recombinase [Bacillus cereus AH1273]
 gi|229022059|ref|ZP_04178613.1| Integrase/recombinase [Bacillus cereus AH1272]
 gi|228739211|gb|EEL89653.1| Integrase/recombinase [Bacillus cereus AH1272]
 gi|228740440|gb|EEL90733.1| Integrase/recombinase [Bacillus cereus AH1273]
          Length = 315

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 57/285 (20%), Positives = 119/285 (41%), Gaps = 24/285 (8%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R L   T++ Y                 +  I+ +  ++  +I+  I + + + +   ++
Sbjct: 46  RNLRPYTIKYYRESL-------------QTKIKPLVLMTEDDIKNMIMEMQRRGLKVTTI 92

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
              L   KSF  +L K K   ++ I +++ LK+   +   L++ Q   L+          
Sbjct: 93  NTKLRAFKSFYNFLHKHKHIKKNPIADIKLLKQRKEVVPTLSKDQIKLLLSLC-----DR 147

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
             ++  R+  I+ L+    +R++E  ++   ++  ++  +R + K    RIVP+   +++
Sbjct: 148 KTFVGVRDYTIMMLMLDTAIRVNELANIEVADVKHNEIVIR-ETKTFFERIVPMSKKLKE 206

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-STTAHTLRH 267
            +  Y  +  +         LF    G  L     Q  I    +  G+     +AHT RH
Sbjct: 207 QMEIYIKIRGYA----ESDKLFLNQDGNELKKRSIQTRIEYYGKLSGIKDVRVSAHTFRH 262

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           + A   + NGG+   +Q +LGH  L  T+ Y N+ S +  +   +
Sbjct: 263 TSAKLFIQNGGNAFHLQQLLGHTSLEITKKYVNLWSTDIAESHKK 307


>gi|239736500|gb|ACS12989.1| class 1 integrase IntI1 [Pseudomonas aeruginosa]
          Length = 298

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 68/317 (21%), Positives = 126/317 (39%), Gaps = 64/317 (20%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVNWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQ 284
           SFAT LL +G D+R++Q
Sbjct: 282 SFATALLRSGYDIRTVQ 298


>gi|25169070|emb|CAD47906.1| putative transposase [Arthrobacter nicotinovorans]
          Length = 368

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 72/355 (20%), Positives = 134/355 (37%), Gaps = 75/355 (21%)

Query: 14  LLKERQNWLQNLE-IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +++  + +L  L  +ER  S  TL++Y  D + + +FL             RQ+    + 
Sbjct: 24  VVEPVERFLAYLTDVER--SPNTLKAYAHDLKDWFVFLRHRGI------DWRQVRLENVG 75

Query: 73  AFISKRR----------------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTES----- 111
            F++  R                +   G  +L R L+ +  F  +  +  +         
Sbjct: 76  EFVAWLRLPPAGRAADVTLLPSASHHCGPGTLNRKLAAVSGFYVFHSRHGVPLGDLVTEF 135

Query: 112 -----------NIL-----------NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
                        L            +  L++   LP  L    A  ++D          
Sbjct: 136 ETVRYRRTGWRPFLAHLAGDRPQRRRIVKLREPKRLPTVLPAATAQAVLDAC-------- 187

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---------QGKGDKIRIV 200
                R+  +  LL+  G+RI EAL L  ++I   +  L I         + K    R +
Sbjct: 188 --TRLRDRFLFVLLWESGIRIGEALGLRHEDIAVAEGELTIRRRVNANRARAKSVSPRTI 245

Query: 201 PLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P+   V +   +Y      DL+ + + + L+ G RG+P+        +++LRR  G+   
Sbjct: 246 PIGADVVRLYGDYLHEEYGDLDSDYVFVNLWAGPRGRPMGYAAVYDLVKRLRRDTGVDFD 305

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
              H  RH++AT LL  G  +  I S+LGH  ++TT  +Y ++  ++      + 
Sbjct: 306 --PHWFRHTYATRLLRAGTPIEVISSLLGHASVATTIDVYGHLTVEDARRAFEKA 358


>gi|24374071|ref|NP_718114.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24348549|gb|AAN55558.1|AE015694_7 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 287

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 124/292 (42%), Gaps = 36/292 (12%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q +   + + RG S  T  +Y     Q   +           Q +  ++  ++ A+   
Sbjct: 5   LQQFHDEISL-RGYSARTRNAYLYAITQLQHYAN---------QPLDNITDEQLTAYFRY 54

Query: 78  RR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               +     +LK  L+GI  F +++ KR        + +   K+ + LP+ L+ +    
Sbjct: 55  LNLERHHSRATLKLQLNGIHFFYEHVLKRDF-----TIQLSLPKRPHKLPQLLSCQDIAA 109

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195
           L+ +            + +  A+L L YGCGLR+SE   +   +I   +  L++ QGKG 
Sbjct: 110 LLYHC----------QNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGA 159

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG---KPLNPGVFQRYIRQLRR 252
             R V L P++   + +Y+              LF         PL+   F++ + +  R
Sbjct: 160 CDRWVILSPTLLILLRQYWQAYH------PVEWLFASTYHDVVYPLHESTFRKALAKAAR 213

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              +    + H+LRH++ATH L  G  L  +Q+ LGH  + +T+ Y + + +
Sbjct: 214 LASITKPCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPE 265


>gi|282882640|ref|ZP_06291251.1| phage integrase family protein [Peptoniphilus lacrimalis 315-B]
 gi|281297516|gb|EFA90001.1| phage integrase family protein [Peptoniphilus lacrimalis 315-B]
          Length = 327

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 58/296 (19%), Positives = 120/296 (40%), Gaps = 25/296 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L    IE G S+ +L+ Y+      L  L          + ++++   +IR ++++
Sbjct: 53  VELFLSAKRIE-GCSEKSLKYYKSTIEAMLDELK---------KDVKRIVTDDIREYLTE 102

Query: 78  RRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            + +K   + ++      + SF  +L+      +S +  +  +K   ++    +++    
Sbjct: 103 YQEKKKSSKVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVKTGTNIKETYSDEALEL 162

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           + DN            + R+ AI+ +L   G+R+ E + L   +I  ++    + GKG K
Sbjct: 163 MRDNC----------TELRDLAIIDMLASTGMRVGEMVLLNRNDIDFNERECIVFGKGSK 212

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+V      +  +  Y      D   N  L +      + L  G  +  +R+  + LGL
Sbjct: 213 ERVVYFDARTKIHLQNYLKSRTDD---NPALFVSLKSPHERLKIGGVEVRLREYGKKLGL 269

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                 H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V   N      +
Sbjct: 270 QK-VHPHKFRRTLATMAIDKGMPIEQLQQLLGHRKIDTTLQYAMVKQSNVKIAHRK 324


>gi|326331386|ref|ZP_08197676.1| tyrosine recombinase XerC [Nocardioidaceae bacterium Broad-1]
 gi|325950642|gb|EGD42692.1| tyrosine recombinase XerC [Nocardioidaceae bacterium Broad-1]
          Length = 331

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 72/309 (23%), Positives = 126/309 (40%), Gaps = 19/309 (6%)

Query: 18  RQNWLQNLEI--ERGLSKLTLQSYECDTRQFLIFL-----AFYTEEKITIQTIRQLSYTE 70
            +++L +      RGL+  +  +Y  D   +   L          + + +  I  L+   
Sbjct: 6   VEDFLTDRATLTRRGLNDKSRSAYRQDIVAWARQLHVDAGGEPDADVLALVPISALTDQN 65

Query: 71  IRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +R  I+ R   +     + +R +  ++ F  +L+          L +   ++ + LP   
Sbjct: 66  VR--IAYRSLRENSAAATCQRRVGTLRLFTHWLQLEGHLLVDPTLRIEAPERPSRLPAGW 123

Query: 130 NEKQALTL--VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DD 184
           +  +   L  V +     +   +W   R+ AI  +L   G+R +E   LT  +I    D 
Sbjct: 124 SVDELRRLARVASTPREGTDRRRWPT-RDRAIFAVLVTTGVRAAELCDLTVGSIRREPDG 182

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKPLNPGVF 243
           ++ +R+ GKGDK R +PL P    A+  Y           +    LF    GK L PG  
Sbjct: 183 ETLVRVIGKGDKQRNLPLPPEAVDAVDAYLAELEARFGTRDPADNLFVLTSGKQLRPGAL 242

Query: 244 QRYIRQLRRYLGLPL--STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              +    R  G+P      AH  RHS A  L+ +G  + ++Q +LGH  L TT IY   
Sbjct: 243 NHLVETWIRLAGVPKQPGEAAHAFRHSAAKGLIRSGVPVPAVQGLLGHEDLKTTGIYVKA 302

Query: 302 NSKNGGDWM 310
            + +  D +
Sbjct: 303 TASDTRDAV 311


>gi|111025268|ref|YP_707688.1| integrase/recombinase [Rhodococcus jostii RHA1]
 gi|110824247|gb|ABG99530.1| probable integrase/recombinase [Rhodococcus jostii RHA1]
          Length = 439

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 67/303 (22%), Positives = 111/303 (36%), Gaps = 13/303 (4%)

Query: 14  LLKERQNWLQ-NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
            LK  ++W    L  +R  S  T++S        L  +       +   T   L    I 
Sbjct: 8   FLKHLRDWFTVFLPRQRAASPHTIESARRAWNMLLSHVCDTGGIPVDKITFPMLDRACIT 67

Query: 73  AFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
            F+ + R  +     +  + L+ I+SF KY    + T   ++ ++  +    + P     
Sbjct: 68  GFLEQTRAERNWTAATYNQRLACIRSFFKYAATAEPTLAIHLADLAGIPLMKA-PATKPV 126

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
                     LL     T     R+   + L+Y    R +E LS    ++   + T+ + 
Sbjct: 127 SHMSQQAIKALLAQPDPTIRTGLRDQFFMILMYDTAARDAEMLSAAIGDLDATRLTIDLL 186

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNPGVFQRYIR 248
           GKG K R +P+          Y     F  +  +  PLF      R + ++     R IR
Sbjct: 187 GKGSKPRRIPITKETAAHYRRY--TAAFHPDPQLGDPLFYTIHSHRKRRMSDDNAARIIR 244

Query: 249 QLRRYLG-----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           Q  +        +P     H LRHS A HL   G  L  +   LGH    TT IY + ++
Sbjct: 245 QHAQAAHRKCAEVPAGAHPHMLRHSRAMHLYQAGMPLALLTEWLGHADPETTLIYAHADT 304

Query: 304 KNG 306
           +  
Sbjct: 305 EMK 307


>gi|24373596|ref|NP_717639.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24347924|gb|AAN55083.1|AE015645_9 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 287

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 124/292 (42%), Gaps = 36/292 (12%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q +   + + RG S  T  +Y     Q   +           Q +  ++  ++ A+   
Sbjct: 5   LQQFHDEISL-RGYSARTRNAYLYAITQLQHYAN---------QPLDNITDEQLTAYFRY 54

Query: 78  RR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               +     +LK  L+GI  F +++ KR        + +   K+ + LP+ L+ +    
Sbjct: 55  LNLERHHSRATLKLQLNGIHFFYEHVLKRDF-----TIQLSLPKRPHKLPQLLSCQDIAA 109

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195
           L+ +            + +  A+L L YGCGLR+SE   +   +I   +  L++ QGKG 
Sbjct: 110 LLYHC----------QNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGA 159

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG---KPLNPGVFQRYIRQLRR 252
             R V L P++   + +Y+              LF         PL+   F++ + +  R
Sbjct: 160 CDRWVILSPTLLILLRQYWQAYH------PVEWLFASTYHDVVYPLHESTFRKALAKAAR 213

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              +    + H+LRH++ATH L  G  L  +Q+ LGH  + +T+ Y + + +
Sbjct: 214 LASITKPCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPE 265


>gi|229092873|ref|ZP_04224007.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-42]
 gi|228690495|gb|EEL44278.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-42]
          Length = 204

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 49/202 (24%), Positives = 95/202 (47%), Gaps = 10/202 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  Q ++  L+IER  SK T+ SY+ D   F+ F+     E+  I +   ++Y ++R ++
Sbjct: 5   KLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDITYADVRLYL 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +    +K+  +S+ R +S ++S  ++L +     ++        KK  S+P+ L  ++  
Sbjct: 60  TTLHDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFAIASLPKKELSIPKFLYAEELE 119

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L +      S     +  RN A+L L+Y  G+R+SE ++L   +I     T+ + GK  
Sbjct: 120 ELFE-----VSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKRK 174

Query: 196 KIRIVPLLPSVRKAILEYYDLC 217
           K +I  +     +     Y   
Sbjct: 175 KTKIYSVRELCTRCFNYLYRER 196


>gi|315651213|ref|ZP_07904243.1| phage integrase family integrase/recombinase [Eubacterium saburreum
           DSM 3986]
 gi|315486509|gb|EFU76861.1| phage integrase family integrase/recombinase [Eubacterium saburreum
           DSM 3986]
          Length = 327

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 59/296 (19%), Positives = 120/296 (40%), Gaps = 25/296 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L    IE G S+ +L+ Y+      L  L          + ++ +   +IR ++++
Sbjct: 53  VELFLSAKRIE-GCSEKSLKYYKATIEAMLNELQ---------KDVKHIVTDDIRGYLTE 102

Query: 78  RRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            + +K   + ++      + SF  +L+      +S +  +  +K   ++    +++    
Sbjct: 103 YQEKKKSSKVTIDNIRRILSSFFAWLEDEDYILKSPVRRIHKVKTGTNIKETYSDEALEL 162

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           + DN            + R+ AI+ +L   G+R+ E + L   +I  ++    + GKG K
Sbjct: 163 MRDNC----------TELRDLAIIDMLASTGMRVGEMVLLNRNDIDFNERECIVFGKGSK 212

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+V      +  +  Y +    D   N  L +      K L  G  +  +R+  + LGL
Sbjct: 213 ERVVYFDARTKIHLQNYLNSRIDD---NPALFVSLKEPHKRLKIGGIEVRLREYGKKLGL 269

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                 H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V   N      +
Sbjct: 270 QK-VHPHKFRRTLATMAIDKGMPIEQLQQLLGHRKIDTTLQYAMVKQSNVKIAHRK 324


>gi|257898705|ref|ZP_05678358.1| integrase-recombinase [Enterococcus faecium Com15]
 gi|257836617|gb|EEV61691.1| integrase-recombinase [Enterococcus faecium Com15]
          Length = 313

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 131/293 (44%), Gaps = 28/293 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RG+S+ T++ ++   + F  FL     +K  I  I  ++   IR F+  +  +   +  +
Sbjct: 8   RGISQKTIKKHQKFLKLFFEFL-----KKEQIYFIEDVTPKSIRQFMLMKLEEGCAETYV 62

Query: 89  KRSLSGIKSFLKYLKKRKIT--TESNILNMRNLKKSNSLPRALNEKQALTLVD------- 139
              L  I+++ KY           +  + ++ +K+   + +  N+ +   +++       
Sbjct: 63  NSHLRSIRAYFKYCVDEDYIRYDRNPCMRVKWVKERKVIIQTFNDMEIKEMLNVAKKLTF 122

Query: 140 -----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGK 193
                    HT ++TK+ + R+  +L +L   GLRI+E ++L   +       L +  GK
Sbjct: 123 FKPQKMDKQHTGYQTKFTNQRDYLLLLILVDTGLRINEVMNLK--DFHITNKELFVENGK 180

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCP----FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           G K RIV   P + K  ++Y  +      ++   NI   +F    GK  N  + +R I +
Sbjct: 181 GKKDRIVHCSPLIYKEYIKYKRVANSFFEYNEIENIDNYVFLTREGKQYNYILAERAIIK 240

Query: 250 LRRYLGLPL--STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +     +      + H+ RH FA  L+ NG D+  IQ +LGH  + TT++Y  
Sbjct: 241 IGNQCKIRKSIRVSPHSFRHYFAQKLVRNGTDIYRIQKLLGHASIKTTEVYLR 293


>gi|300872289|gb|ADK38972.1| IntI4 [Vibrio sp. V90(2010)]
          Length = 290

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 74/307 (24%), Positives = 128/307 (41%), Gaps = 61/307 (19%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGI 95
           ++Y     +++ F        +  +        E+  F++    Q  +  ++   +L+ +
Sbjct: 1   RAYLHWITRYIHFHNKKHPSLMGDK--------EVEEFLTYLAVQGKVATKTQSLALNSL 52

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
               K + K  ++ E   +  +  +    LP  L   +   L++            +D +
Sbjct: 53  SFLYKEILKTPLSLE---IRFQRSQLERKLPVVLTRDEIRRLLEI-----------VDPK 98

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR------- 207
           +   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V L   +        
Sbjct: 99  HQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQI 158

Query: 208 ----------------------KAILEYYDLCPFDLNLNIQLPLFR--------GIRGKP 237
                                  A+ E Y   P++   +   P F+         +R   
Sbjct: 159 ALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHH 218

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +N    Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q +LGH  + TTQI
Sbjct: 219 MNETELQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQELLGHTDVKTTQI 278

Query: 298 YTNVNSK 304
           YT+V  +
Sbjct: 279 YTHVLDR 285


>gi|124028392|ref|YP_001013712.1| integrase [Hyperthermus butylicus DSM 5456]
 gi|123979086|gb|ABM81367.1| possible integrase [Hyperthermus butylicus DSM 5456]
          Length = 406

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 61/301 (20%), Positives = 125/301 (41%), Gaps = 49/301 (16%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG-DRSL-- 88
           S  T+++Y    R FL F        I  + I Q+  +++ A+I +R ++ +   RS   
Sbjct: 35  SPKTVKAYRAALRDFLDF--------IGDKHIFQIDSSDVSAWIYERLSKGVRRPRSSGN 86

Query: 89  ----KRSLSG--------IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                RS           ++ FL +L    +  +  +  ++  + +     AL+ ++   
Sbjct: 87  NLLDARSRQATMHYYTLFLRGFLAWL---GLDVKVPV--VKKPRGARV--EALSREEVEK 139

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+              D  +  I+ LL+  GLR  EA+ L   +I   +  +R++G    
Sbjct: 140 LL----------AAARDPLDLLIVALLFETGLRAQEAVELRLGDIDFQRREIRVRGAKYG 189

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
              + L   + +  ++ +     D+  + +L          ++     + ++ L +  GL
Sbjct: 190 EERIVLYGPLTEYAMQIWLQLHPDMKPDDKL--------LGISYSGLYKRLKTLAKRAGL 241

Query: 257 -PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            P     H LRH+FAT  L  G  L ++Q +LGH  +  TQ+Y ++ +++      + + 
Sbjct: 242 DPRKVRPHVLRHTFATEALRRGLPLPAVQRLLGHKDIKVTQVYLHLVNEDIRRLYQQAFS 301

Query: 316 Q 316
           Q
Sbjct: 302 Q 302


>gi|160945578|ref|ZP_02092804.1| hypothetical protein FAEPRAM212_03107 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443309|gb|EDP20314.1| hypothetical protein FAEPRAM212_03107 [Faecalibacterium prausnitzii
           M21/2]
          Length = 327

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 66/309 (21%), Positives = 127/309 (41%), Gaps = 31/309 (10%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E    E       ++    IE G S+ TL  Y       L  +          ++ +Q++
Sbjct: 43  EQPKAEEQDSAAAFITAKRIE-GCSEKTLTYYSKTIEAMLNDVG---------KSPQQIT 92

Query: 68  YTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
             ++R +++    +RR+ K+   +++R LS   SF  +L+      +S +  +  +K + 
Sbjct: 93  TDDLRKYLTDYQTQRRSSKVTIDNIRRILS---SFFSWLEDEDFIVKSPVRRIHKVKTAK 149

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            +     ++    + DN              R+ AI+ LL   G+R+ E ++L  ++I  
Sbjct: 150 IIKETYTDEALELMRDNC----------STVRDLAIIDLLASSGMRVGELVTLNREDINF 199

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           ++    + GKG+K R+V      +  +  Y D      + N  L +      + L  G  
Sbjct: 200 NERECVVFGKGNKERLVYFDARTKIHLQNYLDERS---DSNPALFVTLKEPHERLMIGGV 256

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +  +R+L R L L      H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V  
Sbjct: 257 ETMLRELGRRLKLNK-VHPHKFRRTLATSAIDKGMPIEQVQQLLGHQKIDTTMRYAMVKQ 315

Query: 304 KNGGDWMME 312
           +N      +
Sbjct: 316 QNVKLAHRK 324


>gi|213972099|ref|ZP_03400191.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato T1]
 gi|302061577|ref|ZP_07253118.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. tomato K40]
 gi|302131091|ref|ZP_07257081.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213923137|gb|EEB56740.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato T1]
          Length = 318

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 66/277 (23%), Positives = 112/277 (40%), Gaps = 24/277 (8%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T ++Y+ D R F  F+     E+      R ++   + A+ ++   + +   +++R L
Sbjct: 38  PRTRRAYQADLRDFCSFVGLAGAEE-----FRVVNRAHVLAWRAQLERRALSGATIRRKL 92

Query: 93  SGIKSFLKYLKKRK-ITTESNILNMRNLKKSN---SLPRALNEKQALTLVDNVLLHTSHE 148
           + + S   YL     +   + +  +            P AL + QA  L+D        +
Sbjct: 93  AALASLFDYLLDNNALAGGNPVHGVARPPVETNEGKTP-ALGDDQAKRLLD-----APDD 146

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSV 206
                 R+ AIL +L   GLR  E   L   ++ + +    LRI GKG KIR +PL P  
Sbjct: 147 ESLQGLRDRAILAVLLYQGLRREELSLLQTGDLQERRGVKHLRIHGKGGKIRYLPLHPVA 206

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLP-LSTT 261
            + I  Y  L            LF  +RGK     +        + +      +      
Sbjct: 207 AERI--YVCLVRDGDRAQTPGALFCSLRGKTSGTGITGKGVYGVVSKWASAALIHVDGLG 264

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            H LR + AT+ L +  D+  +Q  LGH  +STT++Y
Sbjct: 265 VHGLRATAATNALEHDADIAKVQMWLGHANISTTRLY 301


>gi|238059127|ref|ZP_04603836.1| integrase [Micromonospora sp. ATCC 39149]
 gi|237880938|gb|EEP69766.1| integrase [Micromonospora sp. ATCC 39149]
          Length = 333

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 69/285 (24%), Positives = 115/285 (40%), Gaps = 18/285 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY-TEIRAFISK 77
           + WL+N    R LS+ T  +Y  D   +L +      + +    +   +Y  E+ A  + 
Sbjct: 28  EAWLRN----RRLSEHTRDAYRRDVAGWLAWCRARQLDPLRANFLDVNAYGRELEATPAA 83

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA--LNEKQAL 135
           R  + +   ++ R LS + S+  +L K +    + +      +          L  ++  
Sbjct: 84  RSGRPLTPATVARKLSALSSWYDFLVKLRAIEANPVTAADRPRVDRDHSSTVGLTPQEVD 143

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGK 193
            L    L     E+    ARN A + LL   GLR+ E +SL   ++  ++    +R  GK
Sbjct: 144 AL----LAAAQAESGPTAARNRAAVALLADLGLRVGELVSLDLADLGAERGHRSVRFVGK 199

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQL 250
           G K R   L PS   A+  Y         +       PL     G  L+     R +R+L
Sbjct: 200 GGKPRRRALTPSTAYAVDAYLAERAAAQGVGTHQLTGPLLVTATGARLDRHSVFRLVRRL 259

Query: 251 RRYLGLPL--STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            R  G+P     + H+LRH+FAT   + G  L  +Q  +GH    
Sbjct: 260 ARTAGIPAWAKLSPHSLRHAFATTARAEGVPLEDVQDAMGHADPR 304


>gi|187935337|ref|YP_001886583.1| DNA integration/recombination protein [Clostridium botulinum B str.
           Eklund 17B]
 gi|187723490|gb|ACD24711.1| DNA integration/recombination protein [Clostridium botulinum B str.
           Eklund 17B]
          Length = 337

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 69/338 (20%), Positives = 137/338 (40%), Gaps = 45/338 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q++L      + LS  T++SY      F  +L    EE+  I+ + ++    +  +I  
Sbjct: 15  IQDFLDYCNY-KNLSLKTIKSYHQTLTLFFKYL----EEEKDIKNVNKIGKQIVEEYIKF 69

Query: 78  RRTQK-------------------------IGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
            + +                          +   +L   L  IK F  YL++ +I  E+ 
Sbjct: 70  TQERGKYSFVASIDGMVKANIDKRTDIGEKVSTSTLNNYLRNIKVFFSYLEENQIIRENT 129

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           +   + +K        L + +   L+ ++ L     TK+ + R+  I  L++  G+R++E
Sbjct: 130 VKKCKYIKNERKSKEQLTDNEFNKLIKSMDL-----TKFHEYRDYVITNLIFDTGMRLNE 184

Query: 173 ALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
            L+LT  ++   + T+ I     KG K R+V    ++ K +  +           +  P 
Sbjct: 185 TLNLTINDVDFTRRTIMIDSQISKGRKDRVVFYSQTMSKLLQRWLRFKDTMQETELLFPT 244

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
            R      L+   F+R  R   +   +  S T H LR++FA   L    D+ ++  ILGH
Sbjct: 245 QRTNGV--LSVSNFERNFRIYLKRAKINKSITPHGLRNNFARRFLLASSDIHTLSKILGH 302

Query: 290 FRLSTTQI-YTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
             ++ T+  Y ++  ++      + Y +  P    K++
Sbjct: 303 SSVTVTEKAYLDLMDEDF----RKKYQRYSPLENMKER 336


>gi|153810222|ref|ZP_01962890.1| hypothetical protein RUMOBE_00603 [Ruminococcus obeum ATCC 29174]
 gi|153811732|ref|ZP_01964400.1| hypothetical protein RUMOBE_02125 [Ruminococcus obeum ATCC 29174]
 gi|153811869|ref|ZP_01964537.1| hypothetical protein RUMOBE_02262 [Ruminococcus obeum ATCC 29174]
 gi|149832003|gb|EDM87088.1| hypothetical protein RUMOBE_02262 [Ruminococcus obeum ATCC 29174]
 gi|149832135|gb|EDM87220.1| hypothetical protein RUMOBE_02125 [Ruminococcus obeum ATCC 29174]
 gi|149833401|gb|EDM88482.1| hypothetical protein RUMOBE_00603 [Ruminococcus obeum ATCC 29174]
          Length = 345

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 69/312 (22%), Positives = 127/312 (40%), Gaps = 29/312 (9%)

Query: 20  NWLQ-NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           N+L   L  + G S+ T +SY      F  +L     + I+       +   I  F    
Sbjct: 20  NFLNVYLVKQVGRSQATAESYRDSLTIFKNYLVGELGKSISTFQFSDCTKECIYNFREYL 79

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM------RNLKKSNSLPRALNEK 132
                   ++   ++ I+++L Y     I+ +S  L +      + +KK   +   L++ 
Sbjct: 80  LANGSQPSTVNVRVAAIRAYLNYASDMDISVQSVALAISQISPCKTIKKEKPI---LSDD 136

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRI 190
               ++      ++        R+ AIL LLY   +RISE L++   +I  +     + I
Sbjct: 137 ALAAIL------SAPPNTKFGVRDRAILILLYDTAVRISELLNIRLCDIAMESKYPNIFI 190

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI---RGKPLNPGVFQRYI 247
            GKG+K R + L     + + EY     +  N + +  LF          ++ G  QR I
Sbjct: 191 TGKGNKERTIQLTAKAVEHLREYI--RVYHSNSSKEAYLFSTTIKGVTDRMSVGNVQRII 248

Query: 248 RQLR-----RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNV 301
           ++       + + LP S   H  R + AT+L  +G  +  + ++LGH R  TT+  Y   
Sbjct: 249 KKYAALVSEKGVSLPDSVHCHMFRRTRATNLYQDGIAIELVSTVLGHARTDTTKSYYAKP 308

Query: 302 NSKNGGDWMMEI 313
           + +   D M  +
Sbjct: 309 SVEQLRDAMESV 320


>gi|300872297|gb|ADK38976.1| IntI4 [Vibrio sp. V96(2010)]
          Length = 291

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/310 (24%), Positives = 128/310 (41%), Gaps = 61/310 (19%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGI 95
           ++Y     +++ F        +  +        E+  F++    Q  +  ++   +L+ +
Sbjct: 2   RAYLHWITRYIHFHNKKHPSLMGDK--------EVEEFLTYLAVQGKVATKTQSLALNSL 53

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
               K + K  ++ E   +  +  +    LP  L   +   L++            +D +
Sbjct: 54  SFLYKEILKTPLSLE---IRFQRSQLERKLPVVLTRDEIRRLLEI-----------VDPK 99

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR------- 207
           +   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V L   +        
Sbjct: 100 HQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQI 159

Query: 208 ----------------------KAILEYYDLCPFDLNLNIQLPLFR--------GIRGKP 237
                                  A+ E Y   P++   +   P F+         +R   
Sbjct: 160 ALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHH 219

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH  + TTQI
Sbjct: 220 MNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQI 279

Query: 298 YTNVNSKNGG 307
           YT+V   +  
Sbjct: 280 YTHVLDSSAS 289


>gi|294647358|ref|ZP_06724951.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294809021|ref|ZP_06767743.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|292637317|gb|EFF55742.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294443746|gb|EFG12491.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 330

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 65/296 (21%), Positives = 122/296 (41%), Gaps = 25/296 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             +++   +IE G S  TL  Y     + L+ L+           I  ++ T+IR ++S 
Sbjct: 56  LNSFISAKKIE-GCSDKTLTYYRNTIERLLVTLSL---------AICHITTTDIRTYLSD 105

Query: 78  RRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            + +    + ++        SF  +L+      +S +  +  +K  + +   L+++Q   
Sbjct: 106 YQEEHQSSKVTIDNMRRIFSSFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQ 165

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L D+            + R+ AI+ +L   G+R+ E + L  ++I   +    + GKG+K
Sbjct: 166 LRDSC----------TNKRDLAIIDILASTGIRVGELVKLNREDIDFHERQCVVFGKGNK 215

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            RIV      +  + +Y +    D   N  L +        L     +  IR+L + L +
Sbjct: 216 ERIVYFNARTKLHLQQYLNERTDD---NPALFVSLHSPHTRLTISGVEIRIRKLGQSLSM 272

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           P     H  R + AT  +  G  +  +Q +LGH R+ TT  Y  VN  N      +
Sbjct: 273 PK-VHPHKFRRTLATMAIDKGMPIEQVQRLLGHVRIDTTLHYAIVNQNNVKLAHKK 327


>gi|158320856|ref|YP_001513363.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
 gi|158141055|gb|ABW19367.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
          Length = 312

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 65/284 (22%), Positives = 130/284 (45%), Gaps = 21/284 (7%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR--------- 79
           +G ++ T+Q+YE     F  F+     E+IT+  ++Q      + ++S ++         
Sbjct: 18  KGNTEKTIQNYERMITYFQNFIGNKAMEEITLFDVKQ-----YQLYLSSKKAEFKFTDKI 72

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +  ++++     I+ FL +     +  E     ++  K    +   L++++   L  
Sbjct: 73  DRTLSKKTIQTYTRQIRVFLNWAYAESLLKEDIGSKIKLPKAPKKVIEILSDEEIELLYK 132

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            +     ++      RN  ++ L+   GLR  E ++L    I   Q+ +++ GKG+K RI
Sbjct: 133 CI-----NDNTEFGLRNKCMISLMLDSGLRREEVITLDLDCIHFTQNIIKVHGKGEKERI 187

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +PL    +K + +Y +     +       +F      P+   V +  + +L++  G+   
Sbjct: 188 IPLGVYTKKLLFKYLN-GYRPMPSYPTNRVFISQEKVPVTMDVMKMLMLRLKKRTGIQR- 245

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              H LRH+FAT  L  GGD  S+Q ILGH  L  T++Y+++ S
Sbjct: 246 LKPHLLRHTFATKYLIAGGDAFSLQMILGHTSLEMTRMYSHLAS 289


>gi|251778556|ref|ZP_04821476.1| putative site-specific recombinase/integrase [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|243082871|gb|EES48761.1| putative site-specific recombinase/integrase [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 291

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 130/298 (43%), Gaps = 19/298 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +  +++  +L +E G S  T++SY  D + F+ FL     E     T+++      + 
Sbjct: 1   MCQVIEDFKISL-VEDGKSSKTIESYVGDIKAFIEFLGDKGAEFNG--TLQRFYVVSYKN 57

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLK----KRKITTESNILNMRNLKKSNSLPRAL 129
           F+           ++ + ++ I +  +YL      ++I  E++   ++    S       
Sbjct: 58  FLV---ESNYEVATINKKINSIHALNRYLVATGAMKEIVVENSKDRIKIAYGSEKQVEVY 114

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           ++K+   ++  +        + +  RN  I+ LL   G+R+SE  S+  ++I     +++
Sbjct: 115 SDKEVERILFYI-----QNEEKVSKRNKVIVMLLLYTGVRVSELCSIKIKDIDFLNYSIK 169

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           I GKG K R VPL   +   I EY      D N+     L  G RG  L        + +
Sbjct: 170 IYGKGGKFREVPLKFDLADVIKEYIKDR--DYNVKDSEYLVIGQRG-ALKRDAINTMLER 226

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI-YTNVNSKNG 306
           L + +G+      HT RH+F T L++ G  + ++  + GH  + TT   Y N + +  
Sbjct: 227 LTKDIGMVNKLKPHTFRHTFCTRLINRGVPISTVSKLAGHSSVDTTATFYINSSREEK 284


>gi|77918157|ref|YP_355972.1| integrase [Pelobacter carbinolicus DSM 2380]
 gi|77544240|gb|ABA87802.1| integrase [Pelobacter carbinolicus DSM 2380]
          Length = 330

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 124/333 (37%), Gaps = 63/333 (18%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L+ + +  L+        +  T Q+Y     +++ F                +   EI 
Sbjct: 14  KLMDQVREVLRY----HHYAYRTEQTYCDWIVRYIRFFGAKY-------HPCDMGKKEIE 62

Query: 73  AFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           AF+S   T  K+   + +++L+ I    + +  +       ++     +K+      L++
Sbjct: 63  AFLSHLATDCKVSANTQRQALNAIVFLYRQVLDQ---PVDELIEHIKARKNRRPQVVLSQ 119

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            +   ++             +   +  +  LLYG GLR  E + L  Q++  ++  + ++
Sbjct: 120 SEVQQVL-----------ARMTGTHLLMAQLLYGGGLRWMECIRLRVQDLDFERDLIYVR 168

Query: 192 -GKGDKIRIVPLLPSVRKAIL------------------------------------EYY 214
            GKG K R      S++  +                                     E+ 
Sbjct: 169 DGKGGKDRTTTFPASIKNGLQTHVDRIGQLHEQDLAKGYGSVYLPNALDIKYPNAEKEFA 228

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
               F        P    IR   +     Q+ ++      G+      HT RHSFATHLL
Sbjct: 229 WQYVFPSKRLSTDPRSGKIRRHHVLESGLQKAVKVAVNRAGIHKRVGCHTFRHSFATHLL 288

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            NG ++R +Q ++GH  + TT+IYT+V +KN  
Sbjct: 289 ENGVNIRVVQELMGHADVKTTEIYTHVMAKNID 321


>gi|225376750|ref|ZP_03753971.1| hypothetical protein ROSEINA2194_02392 [Roseburia inulinivorans DSM
           16841]
 gi|225211376|gb|EEG93730.1| hypothetical protein ROSEINA2194_02392 [Roseburia inulinivorans DSM
           16841]
          Length = 323

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 58/297 (19%), Positives = 119/297 (40%), Gaps = 27/297 (9%)

Query: 20  NWLQNLEIERGL---SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           ++L      + L   S  T++ Y C+  + L        + I I  I+ ++   +R ++ 
Sbjct: 47  DFLDMFLTTKHLERCSDKTIRYYRCNIEKML--------DTINIPVIK-ITTEMLRKYLV 97

Query: 77  KRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           + +T    G  ++      + +F  +L++     +S +  +  +K +  +   + +++  
Sbjct: 98  EYQTINNCGKVTIDNIRRSLSTFFSWLEEEDYIIKSPMKRIHKVKTAVIVKDTIPDEKIE 157

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L DN            + R+ A++  L   G+R+ E + L   +I   +    + GKGD
Sbjct: 158 ILRDNC----------NNLRDRAMIDFLLSTGIRVGELVRLNIDDIDFSERECVVYGKGD 207

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R        +  +L Y +      + NI L +        L     +  +R++ + LG
Sbjct: 208 KERKAYFDAKTKIHLLNYIESRT---DNNIALFVSLNKPHSRLTESGVELRLREMGKKLG 264

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           +      H  R +  T  +  G  +  +Q ILGH ++ TT  Y  VN  N      +
Sbjct: 265 VEK-VHPHKFRRTMDTRAIEKGMLIEQVQKILGHEQIDTTLRYAMVNQNNVKLSHRK 320


>gi|293402584|ref|ZP_06646711.1| integrase/recombinase, phage integrase family [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291303976|gb|EFE45238.1| integrase/recombinase, phage integrase family [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 327

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/295 (21%), Positives = 123/295 (41%), Gaps = 29/295 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L    IE G S+ +L+ Y       L  L          + +++++  +IR+++++ ++
Sbjct: 56  FLAAKRIE-GCSEKSLKYYNSTIHAMLERLN---------KNVKEITTDDIRSYLTEYQS 105

Query: 81  QKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            K   R ++      + SF  +L+      +S +  +  +K  +++    +++    + D
Sbjct: 106 NKNSSRVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVKTVSNIKETYSDETLELIRD 165

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           N            + R+ A++ LL   G+RI E + L   +I   +    + GKGDK R+
Sbjct: 166 NC----------NEIRDLALIDLLASTGMRIGELVLLNRNDINFYERECVVFGKGDKERV 215

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGLP 257
           V      +  +  Y D    D N      LF  ++     +  G  +  +R L + LGL 
Sbjct: 216 VYFDARAKIHLKNYLDSRTDDNN-----ALFVTLKAPFNRITIGGIETRLRTLGKQLGLS 270

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V   N      +
Sbjct: 271 K-VHPHKFRRTLATMAIDKGMPIEQLQQLLGHRRIDTTLQYAMVKQSNVKIAHRK 324


>gi|54303070|ref|YP_133063.1| hypothetical protein PBPRB1396 [Photobacterium profundum SS9]
 gi|46916498|emb|CAG23263.1| hypothetical protein PBPRB1396 [Photobacterium profundum SS9]
          Length = 295

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 124/297 (41%), Gaps = 29/297 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +  L NL ++ G    T+ +Y    R+   F                ++  +++ + + 
Sbjct: 13  YEQHLTNLTLQ-GKRPATIDAYSRAVRRISQFFDRC---------PDAMTTADLKQYFAS 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q     ++K   +G++ F ++  +++       L++    +S  LP  +  +Q   L
Sbjct: 63  L-IQTHSWSTVKLDRNGLQFFYRHTLEKEW----QWLDIVKPPQSKKLPDIITAQQVALL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDK 196
           +                R       LY  GLR+ E LSLT  +I      + I+ GKG K
Sbjct: 118 ISMTKQK----------RYQIFFLTLYTMGLRLGEGLSLTVHDIDQHTMQVHIRDGKGGK 167

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+VP+      A+  ++          +  P        P++ G  Q+ ++ + +  G+
Sbjct: 168 DRLVPVPQRTLNALRAHWLTHRH---PRLIFPGKGCNTDNPMDRGGVQKAMKLVLKDCGI 224

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
               + H+LRH FATHLL  G DLRS+Q +LGH  L+TT  YT +      D  + I
Sbjct: 225 NKPISPHSLRHCFATHLLEQGLDLRSLQILLGHASLNTTARYTRMTQIKQRDAALAI 281


>gi|269102990|ref|ZP_06155687.1| phage integrase family protein [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162888|gb|EEZ41384.1| phage integrase family protein [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 291

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 124/287 (43%), Gaps = 29/287 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +  L +L ++ G    T+ +Y    R+    L          ++   L+  +++ + ++
Sbjct: 13  YEQHLTHLTLQ-GKRPATIDAYSRALRRITHQLD---------KSPDTLTTDDLKRYFTQ 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +     ++K   +G++ F K++ +R        LN+       +LP  L   +   L
Sbjct: 63  L-IKTHSWSTVKIDRNGLQFFFKHVLQRDW----EWLNIVKPPHVKTLPDILTPSEVSLL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDK 196
           ++               R       LY  GLR+ E L+LT  +I   +  + I+ GKG K
Sbjct: 118 INAT----------SQLRYQVFFLTLYSLGLRLGEGLNLTVGDIDSHRMLVHIRQGKGGK 167

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R +PL      A+  Y+       N     P    +    ++ G  Q+ ++ + +  G+
Sbjct: 168 DRFIPLPRRTLYALRYYWQTH---KNSRYLFPSQFNLNHTVMDRGGVQKAMKAVIKSCGI 224

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             S + H LRHS+ATHLL  G DLRS+Q +LGH  L+ T  YT++  
Sbjct: 225 TKSISPHNLRHSYATHLLERGLDLRSVQHLLGHNSLNATAKYTHLTD 271


>gi|281358281|ref|ZP_06244764.1| integrase family protein [Victivallis vadensis ATCC BAA-548]
 gi|281315371|gb|EFA99401.1| integrase family protein [Victivallis vadensis ATCC BAA-548]
          Length = 330

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 58/295 (19%), Positives = 118/295 (40%), Gaps = 29/295 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS-KRR 79
           ++   +IE G S  T+  Y+    +F  ++          + I  +   ++R +++  ++
Sbjct: 59  FISAKQIE-GCSGKTVIYYQETIGRFFAWIK---------KEITLIDTDDLRLYLAEYQQ 108

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +   ++      + SF  +L+      +S +  +  +K +  +  A  ++    L D
Sbjct: 109 ERNVSKVTIDNIRRILSSFFAWLEDEDYIVKSPVRRIHRIKTAKIIKEAFTDETIEVLRD 168

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                        + RN A++ LL   G+R+ E + L   +I  ++ +  + GKG   R 
Sbjct: 169 TC----------SEVRNLAMVELLASSGMRVGELVKLNRTDINFNERSCIVFGKGSSERE 218

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGLP 257
           V      +  + +Y +    D        LF  +R   K L  G  +  +R+L R   + 
Sbjct: 219 VYFDARTKIHLWQYLNSRTDD-----NPALFVSLRSPHKRLEIGGVEFLLRKLGRIAAIE 273

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            +   H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN  N       
Sbjct: 274 -NVHPHRFRRTLATRAIDKGMPIEQVQRLLGHKKIDTTMCYALVNQSNVKIAHRR 327


>gi|218709877|ref|YP_002417498.1| Site-specific recombinase IntIA [Vibrio splendidus LGP32]
 gi|218322896|emb|CAV19073.1| Site-specific recombinase IntIA [Vibrio splendidus LGP32]
          Length = 324

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 77/324 (23%), Positives = 132/324 (40%), Gaps = 61/324 (18%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            ++Q   + R  +  T Q+Y     Q++++           +  R L+   +  F++   
Sbjct: 8   AYIQEYMLGRHYALRTTQAYIYWIHQYILYHNK--------KHPRNLTSRHVEDFLTHLV 59

Query: 80  TQKIGD-RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +    ++   +L+ I    K + +  I  +   +  R   KS  LP  +  ++     
Sbjct: 60  VDRKSAQKTQSLALNAIVFLYKEIIQEPIELD---MQFRRSDKSRKLPTVMTPEEISRFF 116

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197
           ++                     L+YG GLR+ E L L  Q+I  D  ++R+ QGKG K 
Sbjct: 117 NHC-----------SPNFKLPYQLMYGSGLRLMECLRLRMQDIDYDYKSVRVWQGKGGKN 165

Query: 198 RIVPLLPSVRKAIL-------EYYDLCPFDLNLN-------------------IQLPLFR 231
           RIV + P +  +I        EYY     D   +                       LF 
Sbjct: 166 RIVTIAPELFPSIKLQQQKSAEYYQQDIHDKAFSGVYLPDSLAKKYPSAERSLNWQFLFP 225

Query: 232 G-----------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
                       +R   ++P   Q++I+   +   +  + + HTLRHSFATHLL +G D+
Sbjct: 226 SARLAPDLRTGELRRHHIHPTALQKHIKVASQKADIEKNISCHTLRHSFATHLLQSGADI 285

Query: 281 RSIQSILGHFRLSTTQIYTNVNSK 304
           R++Q  LGH  L TTQIYT++  +
Sbjct: 286 RTVQEQLGHTDLKTTQIYTHIIDR 309


>gi|325107724|ref|YP_004268792.1| integrase family protein [Planctomyces brasiliensis DSM 5305]
 gi|324967992|gb|ADY58770.1| integrase family protein [Planctomyces brasiliensis DSM 5305]
          Length = 303

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 65/276 (23%), Positives = 115/276 (41%), Gaps = 20/276 (7%)

Query: 42  DTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY 101
           D R+F  + A    E+  +  +     T+ + F+  R+ +     ++ RSL  ++ F  +
Sbjct: 42  DLRKFAGWFAEANGERFEVGRVTTRDITDFKTFL--RKDKGQAVATINRSLVTLRRFFGW 99

Query: 102 LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
           L +R   + +    ++ LK+    P+ L+  +   L+  + L              AI  
Sbjct: 100 LAERGTVSLNPAKPVKELKRQQLAPKGLDRTEVRKLLREIELRNDLRAG-------AIFS 152

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCP 218
           ++   G R+S+ ++L   ++M  +    +    GKG+K R+VPL    R+++  Y D  P
Sbjct: 153 VMLYTGCRVSDLVTLELTDLMIGERKGSVTFRLGKGNKQRVVPLPLPARQSLRAYLDSRP 212

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL-SNG 277
                     +F G R  PL     +    +    +G+    T H  RH+ A   L  N 
Sbjct: 213 PI----PSDLVFVGER-GPLTDKGVRALCDKYSAIIGV--KLTPHLFRHTMAHQFLADNE 265

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            DL  +  ILGH  L+TT  YT        D   +I
Sbjct: 266 NDLVGLAQILGHENLNTTARYTRRTDAALSDAAEKI 301


>gi|126664355|ref|ZP_01735339.1| integrase [Marinobacter sp. ELB17]
 gi|126630681|gb|EBA01295.1| integrase [Marinobacter sp. ELB17]
          Length = 319

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 63/312 (20%), Positives = 118/312 (37%), Gaps = 59/312 (18%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSL 88
             S  T ++Y    R F+ F          ++  R +   ++  F++     + +   + 
Sbjct: 20  HYSIRTEKTYWYWIRYFIRFHQ--------MKHPRDMGPRDVNEFLTWLAVHRNVAAATQ 71

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            ++L+ +      +  + +     I  +   KK   LP  L  ++A+ ++          
Sbjct: 72  SQALNALVFLYAKVLDKPLGE---IGEVIRSKKPRKLPVVLTHEEAMCII---------- 118

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVR 207
              +   +  I  L+YG GLR++EA  L  +++  +Q  + ++ GKG K R   L  ++ 
Sbjct: 119 -GKLRHPDHIIASLMYGSGLRVTEACRLRIKDLDFNQQVITVRDGKGAKDRTTLLPGTLI 177

Query: 208 KAILEY---YDLCPFDLNLNIQLPLFR--------------------------------G 232
             +  +           +   Q P+                                   
Sbjct: 178 AELKSHADNICKAWKQKDPQFQHPVSLPHALSRKYSNAGHSLEWQWLFSSPSLSSDNLGN 237

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +     +    QR +R   +   +      HT RHSFAT LL  G D+R++Q +LGH  L
Sbjct: 238 VARHHRHITSVQRSVRNAVKQACIGKPAGCHTFRHSFATELLKRGNDIRTVQDLLGHADL 297

Query: 293 STTQIYTNVNSK 304
            TTQIYT+V  +
Sbjct: 298 RTTQIYTHVLGQ 309


>gi|167761886|ref|ZP_02434013.1| hypothetical protein BACSTE_00229 [Bacteroides stercoris ATCC
           43183]
 gi|167700256|gb|EDS16835.1| hypothetical protein BACSTE_00229 [Bacteroides stercoris ATCC
           43183]
          Length = 330

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 65/296 (21%), Positives = 120/296 (40%), Gaps = 25/296 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             +++   +IE G S  TL  Y     + L+ L+           I  ++ T+IR ++S 
Sbjct: 56  LNSFISAKKIE-GCSDKTLAYYRNTIERLLVTLSL---------AICHITTTDIRTYLSD 105

Query: 78  RRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            + +    + ++        SF  +L+      +S +  +  +K  + +   L+++Q   
Sbjct: 106 YQEEHQSSKVTIDNMRRIFSSFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQ 165

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L D+              R+ AI+  L   G+R+ E + L  ++I   +    + GKG+K
Sbjct: 166 LRDSC----------TTKRDLAIIDFLSSTGIRVGELVKLNREDIDFHERQCVVFGKGNK 215

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            RIV      +  + +Y +    D   N  L +        L     +  IR+L + L +
Sbjct: 216 ERIVYFNARTKLHLQQYLNGRTDD---NPALFVSLHSPHTRLTISGVEIRIRKLGQSLSM 272

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           P     H  R + AT  +  G  +  +Q +LGH R+ TT  Y  VN  N      +
Sbjct: 273 PK-VHPHKFRRTLATMAIDKGMPIEQVQRLLGHVRIDTTLHYAIVNQNNVKLAHKK 327


>gi|319744173|gb|EFV96543.1| phage integrase family integrase/recombinase [Streptococcus
           agalactiae ATCC 13813]
          Length = 328

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 58/295 (19%), Positives = 120/295 (40%), Gaps = 29/295 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS-KRR 79
           ++    IE G S+ +L+ Y+    + +  L          + IRQ+S +++R +++  ++
Sbjct: 57  FISAKRIE-GCSEKSLKYYKMVIEKMVAELD---------KPIRQISTSDLRTYLANYQK 106

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            ++    ++        SF  +L+      +S +  +  +K    +   L+++    L D
Sbjct: 107 ERQSSKVTIDNMRRIFSSFFSWLEDEDYILKSPVRRIHKIKTDKVIKETLSDESLELLRD 166

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                        + R+ A++ LL   G+R+ E + L  ++I   +    + GKG+  RI
Sbjct: 167 TCD----------NIRDLAMIDLLASTGMRVGELVRLNREDINFHERECLVFGKGNSERI 216

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG--IRGKPLNPGVFQRYIRQLRRYLGLP 257
           V      +  ++ Y      D   +    LF         L  G  +  +R++ +   L 
Sbjct: 217 VYFDARTKIHLINYL-----DSRKDDSSALFVSLAYPYDRLMIGGVETRLREIGKRANLQ 271

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                H  R + AT  +  G  +  +Q +LGH ++ TT  Y  VN  N  +   +
Sbjct: 272 K-VHPHKFRRTLATRAIDKGMPIEQVQHLLGHVKIDTTMHYAMVNQANVKNSHRK 325


>gi|204600310|gb|ACI01670.1| integrase [Escherichia coli]
          Length = 298

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 68/317 (21%), Positives = 126/317 (39%), Gaps = 64/317 (20%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQ 284
           SFAT LL +G D+R++Q
Sbjct: 282 SFATALLRSGYDIRTVQ 298


>gi|258512500|ref|YP_003185934.1| integrase family protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257479226|gb|ACV59545.1| integrase family protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 350

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 61/312 (19%), Positives = 118/312 (37%), Gaps = 18/312 (5%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E +    L     +L N     G    ++++     + F  + A              ++
Sbjct: 29  EQIRMSWLAAVDWFLANARRA-GHKPGSIETRRQRIQAFADWCAVRN------LPPGYVT 81

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
             +I+ F+       +   ++   L  +K+F        I   +    +R L++  +   
Sbjct: 82  PDDIQNFVDHCLNINLSVFTINGRLRVLKTFYSEGVAEGIFLSNPADGVRRLREPTNAVL 141

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            ++E     L+         + +W++ R+ AI  L+   GLRI EAL    +++   +  
Sbjct: 142 PVSEDHVQKLL-----AVFDKRQWVEFRDLAITVLVLDTGLRIREALLAKVEDLDLREGA 196

Query: 188 LRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVF 243
           L +     KG K R V    + R+ + E+        +L    + L       PL+   +
Sbjct: 197 LWVPPVHAKGGKGRTVYFGQATRELLSEWLRKRGVGSDLLFPSVYLDVSGAYHPLSRHAY 256

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            + + Q     G+P     H LRH+FA   L  +GGDL ++   +GH    TT+ Y  V 
Sbjct: 257 WKRLAQYAERAGVP-HIHPHQLRHTFAIQFLVRSGGDLVTLARQMGHSSTRTTERYLAVA 315

Query: 303 SKNGGDWMMEIY 314
                  + + +
Sbjct: 316 ETKAQKILTQQH 327


>gi|154488695|ref|ZP_02029544.1| hypothetical protein BIFADO_02002 [Bifidobacterium adolescentis
           L2-32]
 gi|154082832|gb|EDN81877.1| hypothetical protein BIFADO_02002 [Bifidobacterium adolescentis
           L2-32]
          Length = 323

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 60/295 (20%), Positives = 121/295 (41%), Gaps = 29/295 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-R 79
           +L   ++E G S+ +L+ Y     +F   ++         +    ++  +IR ++++  R
Sbjct: 52  FLAAKKLE-GCSERSLRYYATTLSRFATEIS---------RPAHDITTDDIRDYLTRYSR 101

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
             ++G  ++      I S   +L++     +S +  ++ ++ S  L    +++    L D
Sbjct: 102 DGRVGKTTIDNIRRVISSCFSWLEEEDYIYKSPVRRIKKIRTSRMLKPVYSDESLEQLRD 161

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                        + R+ A++ LL   G+R+ E + L  ++I  D     + GKGDK R 
Sbjct: 162 ACK----------ETRDLAMIDLLTSTGIRVGELVQLNRRDIDFDARECVVHGKGDKERR 211

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGLP 257
           V      +  +L Y +    D     +  LF  +    K L     +  +R+L    G+ 
Sbjct: 212 VYFDARAKTHLLVYLEQRMDD-----EPALFVSLHRPFKRLEISGVEARLRKLGDDSGV- 265

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V+  N      +
Sbjct: 266 KHVHPHKFRRTLATKAIDKGMPIEQVQVLLGHSKIDTTLCYAQVDQDNVKRSHRK 320


>gi|328947971|ref|YP_004365308.1| integrase family protein [Treponema succinifaciens DSM 2489]
 gi|328448295|gb|AEB14011.1| integrase family protein [Treponema succinifaciens DSM 2489]
          Length = 332

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 56/293 (19%), Positives = 119/293 (40%), Gaps = 29/293 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS- 76
            +N+L    +E G S+ +++ Y+   ++ +  L          +   Q+   ++R ++S 
Sbjct: 56  LENFLAAKHVE-GCSERSIKYYKSTLQKAITILH---------KPFNQIETEDLRKYLSD 105

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            ++       ++      + +F  +L+      +S +  +  +K +  +    +++  + 
Sbjct: 106 YQKINNASRMTIDNVRRILSTFFTWLEDENYILKSPVRRIHKIKTAKLIKETYSDETLVL 165

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L DN              R+ AI+ +L   G+R+SE ++L  Q++        + GKG K
Sbjct: 166 LRDNCKT----------TRDLAIIDMLASTGMRVSELVTLNKQDVDFVNRECVVFGKGSK 215

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--RGKPLNPGVFQRYIRQLRRYL 254
            R V      +  +L Y +        +    LF  +      L     +  +R+L R L
Sbjct: 216 ERPVYFDARTKIHLLNYLNER-----KDNNPALFVSLLEPHNRLQISGVEITLRKLGRSL 270

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +      H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V+ +N  
Sbjct: 271 NIQK-VHPHKFRRTLATQAIDKGMPIEQVQRLLGHQKIDTTMEYAMVDQQNVK 322


>gi|291485679|dbj|BAI86754.1| hypothetical protein BSNT_04757 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 348

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 54/324 (16%), Positives = 129/324 (39%), Gaps = 37/324 (11%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ---- 81
           +I  GL + T+  Y+   R F  +L    E+   ++ +  ++   +RA+I   R +    
Sbjct: 36  KIAEGLRERTIIDYKKIVRYFTEWLTQKYED---MEYVNDVTIEHLRAYIHYLRYERRRY 92

Query: 82  -------------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
                         + + ++  ++  + ++  YL        + +  ++ +K+   +   
Sbjct: 93  EGHTNIDATKQPVGLSETTVNIAIRTLTAYFNYLYAEGFIDPNPVERLKLIKQDVDMTNN 152

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
              ++   +++        +  ++  R+   + LL   GLRI E + LT   I      +
Sbjct: 153 FTNEEVARILEQ-----PEQRDFVGFRDYVGISLLLDSGLRIGELVGLTVDEIDFSAPQI 207

Query: 189 RI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            +   + KG   RIVP+     K + +  +      + N    +F    G  L    F +
Sbjct: 208 VLGGGRTKGRYFRIVPISTYCAKLLKQLIEENRAHFDTNS---VFVSSLGDQLTTNHFNK 264

Query: 246 YIRQLRRYLGLP-LSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            ++      G+     TAH  RH++A  ++     D+ ++Q + G   + T + Y  +++
Sbjct: 265 RLKFYAERAGIKTKKVTAHVYRHTWAKIMIVDKKIDIYTVQKMGGWKDIRTLRRYVQLST 324

Query: 304 KNGGDWMMEIYDQTHPSITQKDKK 327
           ++    +   +D+  P +  +D +
Sbjct: 325 ED----LRRSHDEGSPLMAIRDSR 344


>gi|312621873|ref|YP_004023486.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202340|gb|ADQ45667.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 310

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 65/314 (20%), Positives = 126/314 (40%), Gaps = 29/314 (9%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++  +  +  Q +L     E G S+LTL+ YE     F         ++           
Sbjct: 6   VIKMDWREALQQFLFYKRAE-GRSELTLRDYEYHVTHFFDLYPNCFHDE----------- 53

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            +++  + +  +Q I   +    L+ +K+F K+  +  I   + +  +   K    +   
Sbjct: 54  QQLKKCLYEYLSQPIKPATYNLRLTYLKAFFKWCVEENILKSNPLEGLPKKKAEGRI--- 110

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
                  T +   LL    +  +   R+ A++ L    G+R  EA SL  ++       +
Sbjct: 111 ---VNIDTEILEKLLKLPDKNTFCGLRDYALILLTLDTGIRPKEAFSLLIEHFDFKTLQV 167

Query: 189 RIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            I     K    R++P+LP    A+ +   +   +   + ++P+F  + G+PL   ++  
Sbjct: 168 FIPSDAAKTRVSRVLPILPVTANAVKKLIAVRHPE--WDEKVPVFCTVTGRPLTRDIWND 225

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +    + LG+      + LRH+FA   L NGG   S+Q  LGH  L  T+ Y +    +
Sbjct: 226 RMEMYSKKLGV--KIRPYDLRHTFALLYLKNGGYELSLQKTLGHTTLEMTKRYVHFTQND 283

Query: 306 GGDWMMEIYDQTHP 319
               + EI +   P
Sbjct: 284 ----LREINNTASP 293


>gi|294053866|ref|YP_003547524.1| integron integrase [Coraliomargarita akajimensis DSM 45221]
 gi|293613199|gb|ADE53354.1| integron integrase [Coraliomargarita akajimensis DSM 45221]
          Length = 448

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 72/327 (22%), Positives = 127/327 (38%), Gaps = 63/327 (19%)

Query: 19  QNWLQNLEIERGL--SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           ++ LQ L   R L  S  T +SY    R F+         + ++Q    ++ + ++ ++ 
Sbjct: 129 EDELQILATMRRLGMSLRTERSYLGHYRNFV--------RQQSVQDGCSMTASAVKCYLD 180

Query: 77  KR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                + +   + K++L+ +    K +    +     I      K    +P  L++ +  
Sbjct: 181 HMAMDRGVASSTQKQALNALVFVAKQVFMVDLGE---IGEYVRAKAGKRIPVVLSQAELR 237

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKG 194
            L + +                 +  + Y  GLR+SE + L  Q++   +  + I+ GKG
Sbjct: 238 ALFEQMESEK-----------LLMAEVQYASGLRVSELVRLRIQDLDFSRGQIVIRSGKG 286

Query: 195 DKIRIVPLLPSVR-------------------------------------KAILEYYDLC 217
           +K RIVPL                                           A  ++    
Sbjct: 287 NKDRIVPLSEKAAPGLRTHLELVETFFREDQERTDLAGVYLPEALARRHSNAGRDWRWQW 346

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            +        P    +R   +    +QR IR+     G+    T+H LRHSFATH+L NG
Sbjct: 347 VWPSRKVSVDPRSGKLRRHHVLDRAYQRTIREAALAAGITKRVTSHALRHSFATHMLENG 406

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSK 304
            D+R++Q +LGH R+ TTQ Y +V  K
Sbjct: 407 TDIRTVQDLLGHRRIETTQTYLHVMQK 433


>gi|257870365|ref|ZP_05650018.1| integrase/recombinase [Enterococcus gallinarum EG2]
 gi|257804529|gb|EEV33351.1| integrase/recombinase [Enterococcus gallinarum EG2]
          Length = 320

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 58/295 (19%), Positives = 118/295 (40%), Gaps = 28/295 (9%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +   + +  + +I+ GLS  TL  Y      F+  +          ++   ++  +IR F
Sbjct: 44  IAAYKQFFVSKKIQ-GLSSGTLNLYMQTINLFMRSVR---------KSFSDVTTNDIRLF 93

Query: 75  ISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           I+ R    ++   +L R    I  F K+L   +   +     + N+K      +  +E +
Sbjct: 94  IANREMIDRVSKGTLARERGCIVRFFKWLCNEEYIAKDPGARVENIKVPKRRKQEFSELE 153

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L           +   +++ + I+ LL   G R+SE +SL  ++   +  ++ + GK
Sbjct: 154 VEKL----------RSATANSKEALIIELLLSTGCRVSELVSLNFRDYDQENDSITVIGK 203

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRR 252
           G+K R + L    + A+  Y          +I  PLF G      +     Q+ +++L  
Sbjct: 204 GNKQRTLYLNAKAKMALNHYLKDV-----PHITGPLFFGQTVGKEMTSAGVQKLVKRLGN 258

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
              +  +   H  R + AT    +G  +  + + LGH  + TT  Y+ +  +   
Sbjct: 259 RAEVA-NVHPHRFRRTAATLARRHGMPIELVMNFLGHESIDTTLKYSMIGDEELK 312


>gi|257784003|ref|YP_003179220.1| integrase family protein [Atopobium parvulum DSM 20469]
 gi|257472510|gb|ACV50629.1| integrase family protein [Atopobium parvulum DSM 20469]
          Length = 328

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 58/296 (19%), Positives = 119/296 (40%), Gaps = 25/296 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI-S 76
              +     +E G S+ T+  Y      +++ +             RQ++  E+R+++  
Sbjct: 54  LDAFYAAKRLE-GCSERTISYYASVLHHYMVNIT---------TGFRQVTTEEVRSYLIE 103

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             + + +   ++      I S   +L+      +S +  ++ ++   ++   + + +  T
Sbjct: 104 YGQRKGVSKITVDNVRRVISSLFSWLEAEDYILKSPVRRIKKIRSPRNIKPVITDDELET 163

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           + D               R+ A++ LL   G+R+ E + L  ++I  +     ++GKGDK
Sbjct: 164 MRDGC----------TCVRDLALVDLLTSSGMRVGELVRLNREDIDFEGRQCVVRGKGDK 213

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R V      +  + EY +    +   N  L +      K L     +  +R L R LGL
Sbjct: 214 ERRVYFDARTKVHLHEYLNSRHDE---NPALFISLDGTKKRLEISGVELRLRMLGRSLGL 270

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           P     H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V+ +N      +
Sbjct: 271 PR-VHPHKFRRTMATRAIDKGMPIEQVQVLLGHSKIDTTLCYAMVDQENVKQAHRK 325


>gi|227461227|gb|ACP39554.1| putative integron integrase [uncultured microorganism]
          Length = 347

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/310 (22%), Positives = 119/310 (38%), Gaps = 56/310 (18%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSL 88
            L+  T Q Y     +++ F          I+  + +S  E+ AF++    Q  +   + 
Sbjct: 56  HLAYSTEQCYAYWIERYIRFH--------GIRHPQTMSGPEVEAFLTDLAVQGRVAASTQ 107

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            ++LS +    +      +  E  +L+     +   +P  L+  +   L+         +
Sbjct: 108 NQALSALLFLYR----EVLRMEIGMLDAVRANRPKRVPAVLSVPEIRALL------AGID 157

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVR 207
                     +  L+YG GLR+ E   L  +++  ++  L ++ GKGDK R V L  + R
Sbjct: 158 HLPTTEPYGLMARLMYGAGLRLMECCRLRVKDVDLERGQLTVREGKGDKDRYVMLPAAAR 217

Query: 208 K----------------------------AILEYYDLCPFDLNLNIQLPLFRGIR----- 234
                                        A+   Y     +L         R        
Sbjct: 218 DGLGRQRAWRRSLHERDLTRGYGRVELPHALHRKYLHADCELGWQFLFASTRMSHDPRTG 277

Query: 235 ---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
                 ++    QR +  + R LG     T HTLRHSFATHLL  G D+R++Q +LGH  
Sbjct: 278 EIGRHHVHDSAVQRAMTTVVRQLGWTKRVTCHTLRHSFATHLLEQGQDIRTVQELLGHSD 337

Query: 292 LSTTQIYTNV 301
           + TT IYT+V
Sbjct: 338 VRTTMIYTHV 347


>gi|24373721|ref|NP_717764.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24373766|ref|NP_717809.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24348094|gb|AAN55208.1|AE015659_2 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
 gi|24348149|gb|AAN55253.1|AE015663_3 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 287

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 120/292 (41%), Gaps = 36/292 (12%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q +   + + RG S  T  +Y     Q   +           Q +  ++  ++ A+   
Sbjct: 5   LQQFHDEISL-RGYSARTRNAYLYAITQLQHYAN---------QPLDNITDEQLTAYFRY 54

Query: 78  RRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              +      +LK  L+GI  F        +      + +   K+ + LP+ L+ +    
Sbjct: 55  LNLEWHHSRATLKLQLNGIHFFY-----EHVLKRDFTIQLSLPKRPHKLPQLLSCQDIAA 109

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195
           L+ +            + +  A+L L YGCGLR+SE   +   +I   +  L++ QGKG 
Sbjct: 110 LLYHC----------QNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGA 159

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG---KPLNPGVFQRYIRQLRR 252
             R V L P++   + +Y+              LF         PL+   F++ + +  R
Sbjct: 160 CDRWVILSPTLLILLRQYWQAYH------PVEWLFASTYHDVVYPLHESTFRKALAKAAR 213

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              +    + H+LRH++ATH L  G  L  +Q+ LGH  + +T+ Y + + +
Sbjct: 214 LASITKPCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPE 265


>gi|146304382|ref|YP_001191698.1| phage integrase family protein [Metallosphaera sedula DSM 5348]
 gi|145702632|gb|ABP95774.1| phage integrase family protein [Metallosphaera sedula DSM 5348]
          Length = 286

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 65/305 (21%), Positives = 133/305 (43%), Gaps = 47/305 (15%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++++L+   G  + T++ Y    + FL F+          +  R ++  ++  +I    +
Sbjct: 18  FMESLKFS-GAGQGTIKLYSTAIQDFLQFVK---------KDPRSVTTQDVIDWIGSLNS 67

Query: 81  QKIGDR---------SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           +K   R         +++  +  ++ FLK+L    +  +  +  +R+ ++      AL E
Sbjct: 68  RKGRSRVVDKRGRSATIRSYVIAVRRFLKWL---GVNVKPPVPRIRSPER-----MALRE 119

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           +  + L+                R+  I+ LL   GLR SE LSL   ++  ++  +R++
Sbjct: 120 EDIVALLSACRR----------LRDKVIVSLLVDTGLRSSELLSLRRSDVDLERMLIRVR 169

Query: 192 -GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
             K  + RIV         + +Y          +   PLF       L+     + I++L
Sbjct: 170 ETKNGEERIVFFTSRTATLLRQYL--RKTQDKESDDAPLFN------LSYQALYKLIKRL 221

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            R  GL      H LRH+FAT+ +  G  L ++Q ++GH  + TTQIYT++ +++  +  
Sbjct: 222 GRKTGLTW-LRPHVLRHTFATNAIRRGVPLPAVQRLMGHKDIKTTQIYTHLVTEDLENAY 280

Query: 311 MEIYD 315
              ++
Sbjct: 281 RRAFE 285


>gi|153807716|ref|ZP_01960384.1| hypothetical protein BACCAC_01998 [Bacteroides caccae ATCC 43185]
 gi|160886162|ref|ZP_02067165.1| hypothetical protein BACOVA_04169 [Bacteroides ovatus ATCC 8483]
 gi|160889100|ref|ZP_02070103.1| hypothetical protein BACUNI_01521 [Bacteroides uniformis ATCC 8492]
 gi|149129325|gb|EDM20539.1| hypothetical protein BACCAC_01998 [Bacteroides caccae ATCC 43185]
 gi|156108047|gb|EDO09792.1| hypothetical protein BACOVA_04169 [Bacteroides ovatus ATCC 8483]
 gi|156861567|gb|EDO54998.1| hypothetical protein BACUNI_01521 [Bacteroides uniformis ATCC 8492]
          Length = 327

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 57/296 (19%), Positives = 111/296 (37%), Gaps = 25/296 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI-S 76
             ++L    +E G S  ++  Y       +  +          + IR ++  ++R ++  
Sbjct: 53  IDSFLSAKRVE-GCSDKSMHYYRSTLNNAIRKIE---------KNIRHITTDDLRNYLND 102

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            ++T      ++      + SF  +L+      +S +  +  +K   ++    +++    
Sbjct: 103 YQQTSGATKVTVDNIRRILSSFFSWLEDEDYIVKSPVRRIHKVKVGKTVKETYSDEALEQ 162

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           + D+              R+ A++ LL   G+R+ E + L   +I  +     + GKGDK
Sbjct: 163 MRDHCE----------GIRDLALIDLLASTGMRVGELVKLNRNDIDFENRECIVTGKGDK 212

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R V      +  +  Y      D   N  L +        L     +  +R+L R L +
Sbjct: 213 QRRVYFDARTKIHLQRYLAERIDD---NPALFVSLLAPYDRLQISGVEIRLRRLGRELNI 269

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           P     H  R + AT  +  G  +  +Q +LGH  L TT  Y  VN  N      +
Sbjct: 270 PK-VHPHKFRRTLATMAIDKGMPIEQVQHLLGHQSLDTTLQYAMVNQTNVKMSHRK 324


>gi|28211234|ref|NP_782178.1| DNA integration/recombination protein [Clostridium tetani E88]
 gi|28203674|gb|AAO36115.1| DNA integration/recombination protein [Clostridium tetani E88]
          Length = 343

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 65/332 (19%), Positives = 138/332 (41%), Gaps = 46/332 (13%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
              +++   + ++ L   T+ SYE   R F    A Y E+  +I  ++ ++    + +I+
Sbjct: 19  AIDDFMFYCQ-QKDLRPKTIASYESTLRLF----ARYLEDTFSINNVKDITEEMCKDYIT 73

Query: 77  KRRTQK-------------------------IGDRSLKRSLSGIKSFLKYLKKRKITTES 111
             + +                          I   ++   +  +K F  +  + +IT  +
Sbjct: 74  YTKERGKYTFVADKNTTFINQPSNREDYGKKISTTTVNNYIRNLKVFFNWCIEERITNVN 133

Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
           N+  ++  K +      L +++   LV  +       TK+ + R+  I+ L+   G+RI 
Sbjct: 134 NMQRIKQFKNNRISKDQLTDEEFKRLVRYL-----DTTKYHEFRDYVIIQLIIDTGMRIG 188

Query: 172 EALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
           E L+LT  N+  D+  + IQ    KG K R V    ++ + +  +       +  ++   
Sbjct: 189 ETLALTIDNVDLDRRAILIQAEINKGRKDRYVFYSYTMSRLLKRWIQYKDRYVESDL--- 245

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LF   RG  L    F++   +  +   +    + HTLR+++A   L  GG +  +  ILG
Sbjct: 246 LFCVKRGTQLQISNFEKNFSKYIKRARIDKKISPHTLRNNYARRFLLAGGSIFDLSRILG 305

Query: 289 HFRLSTTQI-YTNVNSKNGGDWMMEIYDQTHP 319
           H  ++ T+  Y ++ +++    + + Y    P
Sbjct: 306 HSSVTVTEKAYADLTTED----IRKNYQLFSP 333


>gi|225155384|ref|ZP_03723876.1| integrase/recombinase (E2 protein) [Opitutaceae bacterium TAV2]
 gi|224803840|gb|EEG22071.1| integrase/recombinase (E2 protein) [Opitutaceae bacterium TAV2]
          Length = 341

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 72/314 (22%), Positives = 129/314 (41%), Gaps = 53/314 (16%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT--QKIGDR 86
           R  S  T +SY    R+F ++L         ++T+   +   + AF++   +        
Sbjct: 30  RKWSLATEKSYCAWVRRFGVWLMVTP----AVKTLPDATAR-VTAFLAGLVSGPSPRSGT 84

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           +LK++L+ +  F ++++   +     + ++   K +   P  L  +Q    +  V     
Sbjct: 85  TLKQALNALVFFYEHVRDEPLGR---LGDIPRPKMAVRAPTVLTREQVKAWIGAV----- 136

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPS 205
                 D     I  LLY  G+RISE L+L  Q+I+ + S + ++  KG+K R VPL  +
Sbjct: 137 --EDSHDQPYKLICRLLYFTGMRISEVLNLRVQDIIWEHSEILLRAAKGNKDRRVPLPCA 194

Query: 206 VRKAILE-----------------------------------YYDLCPFDLNLNIQLPLF 230
           V   + +                                   +     F    +   P  
Sbjct: 195 VMTDLRQQLERVRLLWQRDQFDKVPVALPDSVFNKCPRYGFGWPWFFVFAAGKHCTHPRL 254

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +    L+    Q   R     +GL    T H LRH++ATHLL +G D+R++Q +LGH 
Sbjct: 255 GHVVRWRLHDKTLQTVTRVAAEKVGLLGVATPHRLRHAYATHLLESGVDIRTVQDMLGHA 314

Query: 291 RLSTTQIYTNVNSK 304
            ++TT IYT+ + +
Sbjct: 315 DVATTMIYTHTSVR 328


>gi|254303087|ref|ZP_04970445.1| recombinase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148323279|gb|EDK88529.1| recombinase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 290

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 58/286 (20%), Positives = 113/286 (39%), Gaps = 12/286 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + K  +N++  LE E      T+ S   D   FL +L      K  + T+ +L    I+ 
Sbjct: 7   IEKSIKNFIFYLEFEENKKNNTVISIRKDLNNFLEYL-----NKKKLVTLDKLDELVIKE 61

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++++ +   + + +  R LS IK F KYL    +  +   + +  +K        LN  +
Sbjct: 62  YLTELKAADLSNSTYNRRLSSIKKFYKYLINNNLKEKGKEILIEGIKSDEKKLEYLNPDE 121

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L + +      E  +   R+  +  LLY  G+ ++E LSL   N   ++  + +  K
Sbjct: 122 INLLREEM-----KEESFNVLRDRLMFELLYSSGMTVAELLSLGELNFNLEKREVYLL-K 175

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
               +++    + ++  L++           +    +F       L     +R I +   
Sbjct: 176 NKISKVLYFSQTCKEVYLKFLVAKKEKFKEEDNSNIIFVNNSNMRLTDRSIRRLINKYSE 235

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              L    + +TLRHSF  ++L NG     +  +L    +    IY
Sbjct: 236 KANLQKEVSPYTLRHSFCLYMLKNGMPKEYLAKLLDLKSIGLLDIY 281


>gi|328947969|ref|YP_004365306.1| integrase family protein [Treponema succinifaciens DSM 2489]
 gi|328448293|gb|AEB14009.1| integrase family protein [Treponema succinifaciens DSM 2489]
          Length = 330

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 120/298 (40%), Gaps = 29/298 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS- 76
            +N+L    +E G S+ +++ Y+   ++ +  L          +   Q+   ++R ++S 
Sbjct: 56  LENFLAAKHVE-GCSERSIKYYKSTLQKAITILH---------KPFNQIETEDLRKYLSD 105

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            ++       ++      + +F  +L+      +S +  +  +K +  +    +++  + 
Sbjct: 106 YQKINNASRMTIDNVRRILSTFFTWLEDENYILKSPVRRIHKIKTAKLIKETYSDETLVL 165

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L DN              R+ AI+ +L   G+R+SE ++L  Q++        + GKG K
Sbjct: 166 LRDNCKT----------TRDLAIIDMLASTGMRVSELVTLNKQDVDFVNRECVVFGKGSK 215

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--RGKPLNPGVFQRYIRQLRRYL 254
            R V      +  +L Y +        +    LF  +      L     +  +R+L R L
Sbjct: 216 ERPVYFDARTKIHLLNYLNER-----KDNNPALFVSLLEPHNRLQISGVEITLRKLGRSL 270

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            +      H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V+ +N      +
Sbjct: 271 NIQK-VHPHKFRRTLATQAIDKGMPIEQVQRLLGHQKIDTTMEYAMVDQQNVKVSHKK 327


>gi|51245830|ref|YP_065714.1| site-specific recombinase (XerD-like) [Desulfotalea psychrophila
           LSv54]
 gi|50876867|emb|CAG36707.1| probable site-specific recombinase (XerD-like) [Desulfotalea
           psychrophila LSv54]
          Length = 345

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 77/333 (23%), Positives = 133/333 (39%), Gaps = 64/333 (19%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL++ Q  L+        +  T QSY     +FL F         + Q   Q+  TE+  
Sbjct: 26  LLEQVQEVLRYY----NYAYRTEQSYCAWIIRFLNFYD-------SPQEPAQMGITEVEE 74

Query: 74  FISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           ++   +  +     + +++L+ I    + +   ++T  +   + R+LK    LP  L ++
Sbjct: 75  YLHYLQEHENASTSTQRQALNAISFLFQRVLGIELTAIAPSRSKRHLK----LPTVLTQE 130

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ- 191
           +   L+             +  ++  +  LLYGCGL + E + L  ++I+  +  + +  
Sbjct: 131 EVSQLLSQ-----------LRGQHLLMAQLLYGCGLGLMECIRLRVKDIVFAEGHVFVNA 179

Query: 192 GKGDKIRIVPLLP----------------------------SVRKAILEYYDLCPFDLNL 223
           GKG   R VPL                               + +A+   Y L   D+N 
Sbjct: 180 GKGGYDRTVPLPRLITDQLQAQVSRVIQLHKEDIVEGYGEVYLPQAVAFKYPLAAMDVNW 239

Query: 224 NIQLPLFR--------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
               P  +          R   +     Q+ I+       +    T HTLRHS+ATHLL 
Sbjct: 240 QFLFPASKISSDPRSGKRRRHHVMESGLQKAIKTATSRTNIEKHVTCHTLRHSYATHLLE 299

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            G  L  +Q +LGH  + TT+IYT++  KN  D
Sbjct: 300 QGTHLHLLQKLLGHKDVKTTEIYTHLMKKNVHD 332


>gi|212634737|ref|YP_002311262.1| Phage integrase [Shewanella piezotolerans WP3]
 gi|212556221|gb|ACJ28675.1| Phage integrase [Shewanella piezotolerans WP3]
          Length = 342

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 76/333 (22%), Positives = 136/333 (40%), Gaps = 62/333 (18%)

Query: 9   IVSFELLKERQNWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +V FE+  +   ++  +  E   R  S  T +SY    R F+ +       +I+   I Q
Sbjct: 18  VVFFEVTMKESGYISAIRTEIRVRHYSYQTEKSYLYWNRYFINYCQISHGSEISASKIGQ 77

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
                   +I+++    +   + K++L  I    +Y+ K     +++ L+    K    +
Sbjct: 78  F-----LCYIAEQ--CNVSASTQKQALCAIVFACRYVLKM----DTSGLDFPYAKAPKRI 126

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P+ L+ ++A  ++  +              +  I  +L+G GLR+ EAL +  ++I  + 
Sbjct: 127 PQVLSTEEAKQIIGQM-----------SGDHFLIAAILFGAGLRLKEALRIRVKDIDLNN 175

Query: 186 STLRI-QGKGDKIRIVPLLPSVRKAI---------------------------------- 210
            ++ I QGKG K R+  L   +   +                                  
Sbjct: 176 KSIFIHQGKGKKDRVCILPNELISPLELQIEKVRKIHNKDYKAGFGMAALPISLIKKYGA 235

Query: 211 --LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
              +++    F        P    I    ++P  F + +R   +   +    TAHT RHS
Sbjct: 236 SARKFHWQFFFPATRRCIHPSDGYICRHHIHPTAFSKALRLATKKAAIDKRVTAHTFRHS 295

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           FAT LL  G DLR+IQ ++GH  + TTQIYT+V
Sbjct: 296 FATALLRKGYDLRTIQELMGHTDIKTTQIYTHV 328


>gi|118477873|ref|YP_895024.1| phage integrase [Bacillus thuringiensis str. Al Hakam]
 gi|118417098|gb|ABK85517.1| phage integrase [Bacillus thuringiensis str. Al Hakam]
          Length = 317

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 59/293 (20%), Positives = 123/293 (41%), Gaps = 15/293 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK-----ITIQTIRQLSYTEIR 72
            + ++++  +E  LS+ TL+SYE    +F ++L      +      +I  I  ++   ++
Sbjct: 7   IKEYIEDRSLE-NLSRRTLESYENTLTEFRLWLNGCNGNEEEASSRSITHIEDITSQHVK 65

Query: 73  AFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRAL 129
            ++    + ++    ++   L+ IK +  YL    +  E  + IL ++N +K  ++   L
Sbjct: 66  GYMRYCYQERRNSHTTVAGKLTNIKVYFNYLANEGLIDERDNPILRVKNPQKDTNV-ETL 124

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            E+Q   ++   L        +   R+  ++  L G G R+ E + L  ++I      + 
Sbjct: 125 TEEQVRLML-RHLRRRRRVDDFYHYRDYTLVVFLLGTGARLGEIMDLCWKDIDLKDGQVV 183

Query: 190 I--QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
               GK    +  PL   +   + EY      D    +   LF    G+ L+    +   
Sbjct: 184 FPATGKARTQQGQPLGAKLVSELKEYKQYLEND-TYGLPAYLFTTRTGRKLSREAIKLVF 242

Query: 248 RQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            +L + L       +AH+LRH + + L+  G     +Q ++ H ++ TT  Y 
Sbjct: 243 VRLAQELKFEYGRVSAHSLRHFYCSSLIKAGVSPFVVQKLMRHSKIETTMKYV 295


>gi|297539030|ref|YP_003674799.1| integron integrase [Methylotenera sp. 301]
 gi|297258377|gb|ADI30222.1| integron integrase [Methylotenera sp. 301]
          Length = 313

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 65/311 (20%), Positives = 118/311 (37%), Gaps = 60/311 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRS 87
           R  S    ++Y    R+F+ F      + +          +E+  F++   R +++   +
Sbjct: 11  RHFSPRNEEAYVHWIRRFIFFHQKRHPDLMG--------SSEVELFLNYLARDRQVSAST 62

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
              +L+ I      + ++ +     +  ++ +++ + +P  L   +     + +      
Sbjct: 63  QTIALNAIVFLYNDVLEKPLGL---MTGLKRVQRQHRVPVVLTADEVKATFEVM------ 113

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
                      +  LLYG GLR+SE + L  ++I     TL ++ GKG K R   L   +
Sbjct: 114 -----SGTCQLMAQLLYGAGLRVSECIGLRVKDIDFGAKTLTVRDGKGGKDRTTLLPSQL 168

Query: 207 RKAILEY----------------------------YDLCPFDLNLNIQLPLFRGIRG--- 235
            + + ++                            Y      +      P          
Sbjct: 169 IERLQKHLVMVAQLHSADIAKGGGYAAMPNALYRKYPAASRSIAWQFVFPSKVLRPWQNE 228

Query: 236 -----KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
                  ++    QR  +      G+    + HTLRHSFATHLLS G D+R+IQ +LGH 
Sbjct: 229 FQLARWHMSDTTIQRAFKSALNLAGVRKHASVHTLRHSFATHLLSAGTDIRTIQLLLGHR 288

Query: 291 RLSTTQIYTNV 301
            L TT IYT+V
Sbjct: 289 SLQTTMIYTHV 299


>gi|312876294|ref|ZP_07736280.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796940|gb|EFR13283.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 314

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 66/314 (21%), Positives = 122/314 (38%), Gaps = 29/314 (9%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           IV  +  +  Q +L     E G S+ TL  Y+     F         ++           
Sbjct: 6   IVKLDWQEAMQQFLFYKRAE-GRSERTLSDYKYHITHFFDIYPNCFNDE----------- 53

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            +++  + +  +Q I   +    L+ +K+F K+  +  I   + +  +   K    +   
Sbjct: 54  QQLKKCLYEYLSQPIKPATYNLRLTYLKAFFKWCVEENILKSNPLEGLPKKKAEGRI--- 110

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
                  T +   LL    +  +   R+ A++ L    G+R  EA SL  ++       +
Sbjct: 111 ---VNIDTEILEKLLKLPDKNTFCGLRDYALILLALDTGIRPKEAFSLLIEHFDFKTLQV 167

Query: 189 RIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            I     K    R++P+LP    A+ +       +   + ++P+F  + G+PL   ++  
Sbjct: 168 FIPSNAAKTRVSRVLPILPVTANAVKKLIAARHPE--WDEKVPVFCTVTGRPLTSDIWHG 225

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            I    + LG+      + LRH+FA   L NGG   S+Q  LGH  L  T+ Y +    +
Sbjct: 226 RIEMYSKKLGV--KIRPYDLRHTFALLYLKNGGYELSLQKTLGHTTLEMTKRYVHFTQND 283

Query: 306 GGDWMMEIYDQTHP 319
               + EI     P
Sbjct: 284 ----LREINANASP 293


>gi|149182724|ref|ZP_01861190.1| integrase-recombinase protein [Bacillus sp. SG-1]
 gi|148849584|gb|EDL63768.1| integrase-recombinase protein [Bacillus sp. SG-1]
          Length = 279

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 61/300 (20%), Positives = 120/300 (40%), Gaps = 34/300 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++   LE E G S  T+++YE +  ++  +L           +++++S  +++ +I  
Sbjct: 9   IEDFTVWLENE-GKSANTVRTYERELTKYQDWLQQKG------LSLKEVSQEDVQQYIRF 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q     +  + L  I++F K++K+ +ITT   +          +    LN  Q  TL
Sbjct: 62  LEGQGRSPVTTDKILGAIRTFSKFIKRPEITTGIEMKTTDK----RTEIECLNGSQCATL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +  V    +         N+AI+Y L   G+R+SE  +L   +I  D+  L ++      
Sbjct: 118 LKKVKEEGNDR-------NTAIVYTLLHTGIRVSELCALNQSDIDLDKGRLEVRTSTGHP 170

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R +PL    +      Y L        ++  +F     + L     Q  ++         
Sbjct: 171 RTIPLSVEAK------YYLECHLATSPVKDAVFVSRANERLTERAIQYILK--------K 216

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H LRH+F   L+  G  +  +  + GH  ++ T+ Y    S+     + E   +T
Sbjct: 217 FDVNPHKLRHTFCQQLVDKGVSIEIVSRLAGHKDINVTKRYAK--SRIEPFALEEAIQKT 274


>gi|77454860|ref|YP_345728.1| putative transposase [Rhodococcus erythropolis PR4]
 gi|229492444|ref|ZP_04386248.1| putative transposase [Rhodococcus erythropolis SK121]
 gi|77019860|dbj|BAE46236.1| putative transposase [Rhodococcus erythropolis PR4]
 gi|229320673|gb|EEN86490.1| putative transposase [Rhodococcus erythropolis SK121]
          Length = 341

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/329 (21%), Positives = 130/329 (39%), Gaps = 55/329 (16%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L+ +         TL +   D + F   +          +   Q+S +++ AFI  
Sbjct: 23  LDEYLRFVAA--RARTNTLLAQTFDLKVFFTIIG---------KEPTQVSTSDVLAFIQA 71

Query: 78  RR-------------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI----------- 113
           +R                +   ++KR L+ I     YL +R +  ++ +           
Sbjct: 72  QRLPRKENVVRLSDGESGLATSTIKRRLASISGLFSYLHERGLVEKNPVPRGLSTRSGRS 131

Query: 114 --LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
                  ++    LPR L+  +   L+  +             R+ A++ L+   GLR  
Sbjct: 132 HVRGTPLIRAPRRLPRVLSPDEVNALLAALRCE----------RDRAMVLLMLFGGLRRC 181

Query: 172 EALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPF--DLNLNIQLP 228
           E L L   ++   +  + +  GKG   RIVP+ P+  +++  Y D          ++ + 
Sbjct: 182 EVLGLRMPDVRPGERRVFVAAGKGGHQRIVPVAPTFFESLGRYLDAERPIDSATDHVFVV 241

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           L R  RG PL+       +   R   GLP   T H LRH+  T L  +G  L +IQ+  G
Sbjct: 242 LKRPRRGNPLSAAGLDEILSGARVRGGLP-HATCHELRHTCFTRLRESGMALEAIQAQAG 300

Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           H  + +T+IY ++ +    DW++  Y + 
Sbjct: 301 HASIESTRIYLHLAN----DWLIGEYSKA 325


>gi|294141273|ref|YP_003557251.1| site-specific recombinase, phage integrase family [Shewanella
           violacea DSS12]
 gi|294141423|ref|YP_003557401.1| site-specific recombinase, phage integrase family [Shewanella
           violacea DSS12]
 gi|293327742|dbj|BAJ02473.1| site-specific recombinase, phage integrase family [Shewanella
           violacea DSS12]
 gi|293327892|dbj|BAJ02623.1| site-specific recombinase, phage integrase family [Shewanella
           violacea DSS12]
          Length = 296

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 78/318 (24%), Positives = 131/318 (41%), Gaps = 40/318 (12%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           N  E   F+ L   +  L NL ++ G    T+ +Y    R+   F               
Sbjct: 2   NTSEQQRFDFL--YEQHLTNLTLQ-GKRPATIDAYSRAVRRIAAFFDCC---------PD 49

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            L+  +++ + +          ++K   +G++ F +Y+           LN+    +   
Sbjct: 50  NLTTDDLKRYFASLIDSH-SWSTVKLDRNGLQFFYRYVLNHSW----EWLNIVKPPQVQR 104

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   +   ++                R       LY  GLR+ EA+SL   +I   
Sbjct: 105 LPDILTPCEVAIVISLTR----------QLRYQVCFLTLYSMGLRLGEAISLRVGDIDSQ 154

Query: 185 QSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---LNP 240
              + I+  KG K R+VPL     +A+  Y+              LF G   +P   ++ 
Sbjct: 155 IMQVHIRNAKGGKDRLVPLPKRTLQALRYYWKTHHHPR------YLFPGKDSQPDSLIDK 208

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           G  Q+ ++++     +  S + H LRHS+ATHLL  G DLRS+QS+LGH  L+TT  YT 
Sbjct: 209 GGIQKALKRVIGECNIHKSISPHNLRHSYATHLLEQGLDLRSVQSLLGHNSLNTTARYTR 268

Query: 301 VNS---KNGGDWMMEIYD 315
           +     KN  + + ++ D
Sbjct: 269 LTQITRKNTVEAINQLAD 286


>gi|160875127|ref|YP_001554443.1| integrase family protein [Shewanella baltica OS195]
 gi|160875848|ref|YP_001555164.1| integrase family protein [Shewanella baltica OS195]
 gi|160860649|gb|ABX49183.1| integrase family protein [Shewanella baltica OS195]
 gi|160861370|gb|ABX49904.1| integrase family protein [Shewanella baltica OS195]
 gi|315267318|gb|ADT94171.1| integrase family protein [Shewanella baltica OS678]
          Length = 287

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 123/292 (42%), Gaps = 36/292 (12%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q +   + + RG S  T  +Y     Q   +           Q    ++  ++ A+   
Sbjct: 5   LQQFHDEISL-RGYSARTRNAYLYAITQLQHYAN---------QPFDNITDEQLTAYFRY 54

Query: 78  RR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               +     +LK  L+GI  F +++  R        + +   K+ + LP+ L+ +    
Sbjct: 55  LNLERHHSRATLKLQLNGIHFFYEHVLGRDF-----TVQLSLPKRPHKLPQLLSCQDIAA 109

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195
           L+ +            + +  A+L L YGCGLR+SE   +   +I   +  L++ QGKG 
Sbjct: 110 LLCHC----------QNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGA 159

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG---KPLNPGVFQRYIRQLRR 252
             R+V + P++   + +Y+              LF         PL+   F++ + +  R
Sbjct: 160 YDRLVIISPTLLTLLRQYWRAYH------PVEWLFASTYHDVVYPLHESTFRKALAKAAR 213

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              +    + H+LRH++ATH L  G  L  +Q+ LGH  + +T+ Y + + +
Sbjct: 214 LASITKPCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPE 265


>gi|229829078|ref|ZP_04455147.1| hypothetical protein GCWU000342_01163 [Shuttleworthia satelles DSM
           14600]
 gi|229792241|gb|EEP28355.1| hypothetical protein GCWU000342_01163 [Shuttleworthia satelles DSM
           14600]
          Length = 360

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 58/303 (19%), Positives = 117/303 (38%), Gaps = 24/303 (7%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQT-------IRQLSYTEIRAFISKR------RTQ 81
           TL SY  D   FL FL     +   I         ++Q+   +I  +             
Sbjct: 45  TLISYSYDLLTFLRFLREKNPQLKDIDPKSMKLEILKQIQSEDILEYQRYLSLNVDGEYH 104

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNEKQALTLVDN 140
           + G +++ R +S ++   KY    K  +E     +   +         +N  +   +++ 
Sbjct: 105 ENGKKAIARKMSALRGMYKYQLIHKHISEDPAALVAMPRLKKDKNIVRMNNYEVQDILNA 164

Query: 141 VLLHTSHETKW-------IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           + +     +            R+ AIL +L   G+R+SE   L   ++   +++L I  K
Sbjct: 165 ITIGNQQMSDRQRKYCLKTQQRDLAILTILLNTGMRVSECRGLDLNDVNLIENSLVIVRK 224

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G    I+     V   + +Y +     ++     Q  LF  ++GK ++    ++ +++  
Sbjct: 225 GGGQDIIYFGKPVHSTLSDYIEGERQTISPLEGHQQALFYSLQGKRISVDAIEKLVKKYA 284

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           R        T H LR ++ T L    GD+R +  +LGH  ++TT   Y  +  ++     
Sbjct: 285 RIAVPGKHITPHKLRSTYGTALYRETGDIRLVADVLGHENINTTIDYYAAIEDEHKRQAA 344

Query: 311 MEI 313
             +
Sbjct: 345 NAV 347


>gi|118578673|ref|YP_899923.1| phage integrase domain/SAM domain-containing protein [Pelobacter
           propionicus DSM 2379]
 gi|118501383|gb|ABK97865.1| phage integrase domain protein SAM domain protein [Pelobacter
           propionicus DSM 2379]
          Length = 362

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 61/322 (18%), Positives = 115/322 (35%), Gaps = 27/322 (8%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
            + +P+ +  +L    +NWL+         + T+++Y      +L +            T
Sbjct: 17  SSQIPDNLPADLEAAVRNWLEREVALGDPREDTIKTYTSHLNHWLRWCNARGI------T 70

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--K 120
              ++  ++ +F  +     +   S+   L+ I+ F +    R + T +   N+R    +
Sbjct: 71  PAAMTQADVESFRHELIQAGMKASSIAVKLTVIRRFYQVAMNRGLITINPAANVRPPVAR 130

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           ++ S  + L   QA  L+    +H          R+ AI+ L+   GLR  E      ++
Sbjct: 131 EAKSEQKHLTAGQAELLI----MHLPELGSIKGLRDRAIIALMLLEGLRRVEIKRANVED 186

Query: 181 IMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC--------PFDLNLNIQLPLFR 231
           I D +  +RI      K   +        AI  Y                      P+F 
Sbjct: 187 IEDVEGGVRILVHGKRKDGYIYPREDTVAAIRAYLAARGEVTVEETTIHNRQAFVTPMFL 246

Query: 232 GIRGK-----PLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQS 285
            +R        ++       I       GL     + H LRH+  T L     D+R++Q 
Sbjct: 247 SVRKNGRGRGRISRIGLNSVIDGYLSKAGLKRKRVSCHALRHTCGTMLYDVTKDIRAVQD 306

Query: 286 ILGHFRLSTTQIYTNVNSKNGG 307
            L H  +ST+ IY     ++  
Sbjct: 307 TLRHEDISTSAIYAASGREHKR 328


>gi|253563520|ref|ZP_04840977.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251947296|gb|EES87578.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|301162178|emb|CBW21723.1| putative phage integrase protein [Bacteroides fragilis 638R]
          Length = 330

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 64/296 (21%), Positives = 120/296 (40%), Gaps = 25/296 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             +++   +IE G S+ TL  Y     + L+ L+           I  ++ T+IR ++S 
Sbjct: 56  LNSFISAKKIE-GCSEKTLTYYRNTIERLLVSLSL---------AICHITTTDIRTYLSN 105

Query: 78  RRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            + +    + ++        SF  +L+      +S +  +  +K  + +   L+++Q   
Sbjct: 106 YQEEHQSSKVTIDNMRRIFSSFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQ 165

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L D+              R+ AI+  L   G+R+ E + L  ++I   +    + GKG+K
Sbjct: 166 LRDSC----------TTKRDLAIIDFLSSTGIRVGELVKLNREDIDFHERQCVVFGKGNK 215

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+V      +  + +Y +    D   N  L +        L     +  IR+L   L +
Sbjct: 216 ERVVYFNARTKLHLQQYLNGRTDD---NPALFVSLHSPHTRLTISGVEVRIRKLGHTLSM 272

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           P     H  R + AT  +  G  +  +Q +LGH R+ TT  Y  VN  N      +
Sbjct: 273 PK-VHPHKFRRTLATMAIDKGMPIEQVQRLLGHVRIDTTLHYAIVNQNNVKLAHKK 327


>gi|300872291|gb|ADK38973.1| IntI4 [Vibrio sp. V91(2010)]
          Length = 299

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 74/313 (23%), Positives = 129/313 (41%), Gaps = 61/313 (19%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGI 95
           ++Y     +++ F        +  +        E+  F++    Q  +  ++   +L+ +
Sbjct: 7   RAYLHWITRYIHFHNKKHPSLMGDK--------EVEEFLTYLAVQGKVATKTQSLALNSL 58

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
               K + K  ++ E   +  +  +    LP  L   +   L++            +D +
Sbjct: 59  SFLYKEILKTPLSLE---IRFQRSQLERKLPVVLTRDEIRRLLEI-----------VDPK 104

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR------- 207
           +   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V L   +        
Sbjct: 105 HQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQI 164

Query: 208 ----------------------KAILEYYDLCPFDLNLNIQLPLFR--------GIRGKP 237
                                  A+ E Y   P++   +   P F+         +R   
Sbjct: 165 ALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHH 224

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R+++  LGH  + TTQI
Sbjct: 225 MNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVREQLGHTDVKTTQI 284

Query: 298 YTNVNSKNGGDWM 310
           YT+V  +     +
Sbjct: 285 YTHVLDRVASGVL 297


>gi|218132478|ref|ZP_03461282.1| hypothetical protein BACPEC_00337 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992588|gb|EEC58590.1| hypothetical protein BACPEC_00337 [Bacteroides pectinophilus ATCC
           43243]
          Length = 350

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 69/319 (21%), Positives = 130/319 (40%), Gaps = 24/319 (7%)

Query: 13  ELLKER-QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY------TEEKITIQTIRQ 65
           ++L +  +++  +LE  +     T  +Y  D R F  F+         + ++IT+     
Sbjct: 22  DMLPDFTRDYFFSLEYTKQ--PRTKVAYAMDLRGFFEFIRERKYNSYESLKQITLVDAEN 79

Query: 66  LSYTEIRAFISKRR-------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
           +S T+I  ++   R            +R+ KR LS ++SF  Y  K+ +  ++    +  
Sbjct: 80  ISSTDIIEYLRHSRLYVKNGREVTNSERAAKRKLSSLRSFYGYYNKQGLMKKNPAFQVDM 139

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR------NSAILYLLYGCGLRISE 172
            K  +     L+  +   L+DNV          + A       + A+L LL G G+R+SE
Sbjct: 140 PKIHDQAITRLDVNEVAELLDNVESGNRLTKNQLAAHEELKTRDLALLTLLLGTGIRVSE 199

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFR 231
            + L   ++  D   +++  KG     V     VR+A+L+Y D           +  LF 
Sbjct: 200 CVGLDINDVDFDNDRIKVVRKGGAESFVYFGDEVREALLDYMDERSTLQPAAGHENALFI 259

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
               K L     +  +++    +      T H LR ++ T+L     D+  +  +LGH  
Sbjct: 260 SRNNKRLCVRSVENLVKKYAMTVTTVKHITPHKLRSTYGTNLYQESNDIYLVADVLGHKD 319

Query: 292 LSTTQ-IYTNVNSKNGGDW 309
           ++TT+  Y  +   N    
Sbjct: 320 VNTTRKHYAEIVDNNRRKA 338


>gi|320100283|ref|YP_004175875.1| integrase family protein [Desulfurococcus mucosus DSM 2162]
 gi|319752635|gb|ADV64393.1| integrase family protein [Desulfurococcus mucosus DSM 2162]
          Length = 334

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 69/321 (21%), Positives = 130/321 (40%), Gaps = 52/321 (16%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
             + E+ + E+L+E +  L+      G S  T+++Y    + FL F        I  + +
Sbjct: 12  QGILELGNDEILEEFKVSLEA----SGASSETVKAYLSAVKDFLSF--------IGGKPL 59

Query: 64  RQLSYTEIRAFISKRRTQKIGDR----------SLKRSLSGIKSFLKYLKKRKITTESNI 113
           R+++  ++ A+ ++R      +R          +L      +K F ++L           
Sbjct: 60  REVTLKDVVAWRNERLRNGFPNRKMEGREKWQVTLHYYTMFLKRFFEWLGLN-------- 111

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
           + + ++KK  +   AL++++   L++                +  IL LL   GLR  E 
Sbjct: 112 IGVSSVKKPPARINALSDEEIEKLMNA----------ARTPLDKLILRLLVDTGLRSREL 161

Query: 174 LSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
           L L  +++      +R+   K  K R V       + +  +  L            L  G
Sbjct: 162 LGLRVEDVDFHSRVIRVSSAKYGKERYVTATGETFEMLRSWIALNG----------LKPG 211

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
            R   L      + +++L    G+P      H LRH+FAT  L  G  L S+Q +LGH  
Sbjct: 212 DRLFNLTYSGLYKKLKRLAARAGIPPEKIRPHVLRHTFATRALRRGLSLPSLQRLLGHAD 271

Query: 292 LSTTQIYTNVNSKNGGDWMME 312
           + TTQ+Y +++ ++      E
Sbjct: 272 IKTTQVYLHLSIEDLKKEYQE 292


>gi|296502316|ref|YP_003664016.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           BMB171]
 gi|296505552|ref|YP_003667252.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           BMB171]
 gi|296323368|gb|ADH06296.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           BMB171]
 gi|296326604|gb|ADH09532.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           BMB171]
          Length = 301

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 64/311 (20%), Positives = 134/311 (43%), Gaps = 19/311 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + ++  L+I +  S  T+ +Y+ +   F+ +L  + E    +  I  ++   I+ F+  
Sbjct: 6   LKEFIFELKI-KNYSDRTVDTYKYNVGLFITYLNEHHE----VDDIEDIAPFHIKKFVQH 60

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +         +   +  ++SF KYL   +    + +  ++ LK+   + +   + + + +
Sbjct: 61  QIGLGKKANYINTLIKSLRSFFKYLVTEEYMPMNIMSKIQLLKEDTEVIKTFTDDEVVKM 120

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D+    T     +++ARN  I+ +    G+R+SE ++L  + + D    +RI+GKG K 
Sbjct: 121 IDSYDFKT-----YLNARNKVIMAMFVDTGIRMSELINLQSEWVYDTN--IRIKGKGSKW 173

Query: 198 RIVPLLPSVRKAILEY--YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R  P+   ++K ++ Y       F+         F    GKP+     +  ++       
Sbjct: 174 RFAPISLMLKKYMIRYERIKTKYFEKKALEHDNYFLSRAGKPICTVQIENIVKNAGLRAD 233

Query: 256 LPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +      + HTLRH      L NG DL S   I GH  +  T+ Y         + ++E+
Sbjct: 234 VRKDIRCSPHTLRHYAIQANLRNGLDLYSCSKIAGHENIQVTKRYL---QGLETENILEM 290

Query: 314 YDQTHPSITQK 324
             +T P +  +
Sbjct: 291 AQKTSPLMNLR 301


>gi|193214734|ref|YP_001995933.1| integron integrase [Chloroherpeton thalassium ATCC 35110]
 gi|193088211|gb|ACF13486.1| integron integrase [Chloroherpeton thalassium ATCC 35110]
          Length = 355

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 67/304 (22%), Positives = 122/304 (40%), Gaps = 60/304 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           R  SK T ++Y    +QF+ F          ++  + +S  EI AF++     +K+    
Sbjct: 35  RPYSKRTQKAYCYWVKQFVYFYQ--------LRHPKDMSEPEINAFLTHLAVEKKVSASP 86

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++LS +    +++  +++    +++  R       LP  L  ++  +++         
Sbjct: 87  QNQALSALLFLYRHVIGKELGDLGHVIRARKP---IRLPVVLTREEVKSVL--------- 134

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
               + A    +  L+YG GLR+ E L L   +I   ++ + I+ GKG K R+  L  S+
Sbjct: 135 --TGLKAEKWLMASLMYGSGLRLMECLQLRIHDIDFSRNEIPIRDGKGAKDRLTMLPESL 192

Query: 207 RKAI------------------------------------LEYYDLCPFDLNLNIQLPLF 230
           +K +                                     E+     F      +    
Sbjct: 193 KKPLADHLKRVKRIHDKDLADGWGRVILPNALDRKYPNAPAEWRWQWVFPQENRWKNTNT 252

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
                  ++  + Q+ + +  R  GL    T HT RHSFATHLL +G D+R+IQ +LGH 
Sbjct: 253 GEEGRHHVHESIIQKAVTRAVRKAGLTKRATCHTFRHSFATHLLESGYDIRTIQELLGHK 312

Query: 291 RLST 294
            + T
Sbjct: 313 NVET 316


>gi|149200531|ref|ZP_01877542.1| Integron integrase [Lentisphaera araneosa HTCC2155]
 gi|149136380|gb|EDM24822.1| Integron integrase [Lentisphaera araneosa HTCC2155]
          Length = 415

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 85/329 (25%), Positives = 138/329 (41%), Gaps = 66/329 (20%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           S ELL   Q  ++ + ++R  S  T QSY     ++L F               +    E
Sbjct: 100 SRELL--LQKMVEVMRVQR-KSYRTEQSYLSWVERYLDFHKE-----------GEFDAQE 145

Query: 71  IRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           + +FIS    QK +   +  ++ + +  F +Y+ + ++   S   ++R ++K   LP   
Sbjct: 146 VSSFISHLAVQKCVAASTQNQAFNALVFFFRYVLEIELGDLS--QSVRAVRKEK-LPLVY 202

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              +   ++ N+           +     +  L+YG GLR SEA  L  +++   +  L 
Sbjct: 203 TRDEVKAIMANM-----------EGVPLLMARLIYGGGLRHSEAYRLRIKDLDRGRMCLT 251

Query: 190 IQG-KGDKIRIVPLLPSVRKAI------------------------------------LE 212
           I+G KGDK R VPL  S+  AI                                     E
Sbjct: 252 IRGAKGDKDREVPLGKSLLPAIDEQLERIRKLYDEDRTNDVAGCYLPHTLENKSPNVGKE 311

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +     F  +     P    IR   ++        ++  R  G+  + T HTLRHSFATH
Sbjct: 312 WGWFWLFPADNLSLDPRANKIRRHHVSSNYLNGPYKKALRKAGIVKAGTVHTLRHSFATH 371

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +L +G D+R +Q +LGH  +STTQIYT+V
Sbjct: 372 ILEDGYDIRVLQELLGHSDVSTTQIYTHV 400


>gi|170293805|gb|ACB12942.1| putative site specific tyrosine recombinase [Thauera sp. E7]
          Length = 282

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 127/290 (43%), Gaps = 36/290 (12%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ  +  + + RGL++ T Q+Y     Q                +  +L    ++A++  
Sbjct: 5   RQQMIDAMVL-RGLARRTQQAYLSVVAQLAAHYHC---------SPDRLDGAHVKAWLLH 54

Query: 78  RRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           R T++ +   ++ +++  +K F   +  R     +  + +         P  L+ ++   
Sbjct: 55  RITERHLAYTTVNQAVCALKFFFDIVLGR----TAEAITIPYAHTPQRQPEILSREELAR 110

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQ-GK 193
           L +             + R   +L   Y  GLR+SE  +L   +I    D+  +R+  GK
Sbjct: 111 LFEA----------AANLRARTLLMTAYAAGLRVSEVCALRVADIDSAPDRMCIRVVAGK 160

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLR 251
           G K R   L PS+ +A+  Y+ +C        ++ LF       +P +    QR   + R
Sbjct: 161 GGKDRYTLLSPSLLEALRVYWRIC------KPRVWLFPRATDAAQPYDISSAQRAYYRAR 214

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              G+  +   HTLRH+FATHLL  G DL ++  +LGH  LSTTQ Y ++
Sbjct: 215 DRAGITKTGGIHTLRHAFATHLLEAGVDLATLAKLLGHGHLSTTQRYLHL 264


>gi|120402127|ref|YP_951956.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119954945|gb|ABM11950.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 364

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 72/361 (19%), Positives = 133/361 (36%), Gaps = 68/361 (18%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            + E      ++L +L  +R  S  T ++Y  D   F  +L     E      + +++  
Sbjct: 25  PAAERFGLVNDFLGHLA-DRNFSVHTCRAYAYDLLAFARWLIDEQVE------LAEVNVD 77

Query: 70  EIRAFISKRRT-------------------QKIGDRSLKRSLSGIKSFLKYLKKRKITTE 110
            +  F++  R                    Q     ++ R L+ I S   + + R+    
Sbjct: 78  VLLRFLTACREATLPGRPGGNVYSIRDGRNQGYAPATINRRLAAISSLFAFQEMREPDAR 137

Query: 111 SNI------------------LNMRNLK--------KSNSLPRALNEKQALTLVDNVLLH 144
           + +                   ++   K        +   LPR L  +++  L+      
Sbjct: 138 NPVSGGRSARLRSRGERSGLLTHIAKPKSRSQLRVREQRRLPRGLTRQESAALL------ 191

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
                 +   R+ +I  L+   GLR +E LS+   ++   +  +R+ GKG K R VP+  
Sbjct: 192 ----GSFRSWRDRSIGGLMLMSGLRSTEVLSVRVADVDIARRWVRVLGKGSKERSVPIDT 247

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
            V  AI  Y  +   + +      + +G  RG+PL     +   R  R   G+      H
Sbjct: 248 DVAGAIQTYLLVERPETDAEALFVVAKGVHRGQPLTAAGLRTVFRYHRERSGVSAG-HPH 306

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            LRHSF T L   G DL  IQ+++GH    +   Y ++       ++ E +D     +  
Sbjct: 307 ALRHSFGTALAEAGVDLSVIQALMGHDHADSAAAYIHL----APTFLREEFDAARARLRS 362

Query: 324 K 324
           +
Sbjct: 363 R 363


>gi|54303359|ref|YP_133352.1| hypothetical protein PBPRB1692 [Photobacterium profundum SS9]
 gi|46916789|emb|CAG23552.1| hypothetical protein PBPRB1692 [Photobacterium profundum SS9]
          Length = 295

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 124/297 (41%), Gaps = 29/297 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +  L NL ++ G    T+ +Y    R+   F                ++  +++ + + 
Sbjct: 13  YEQHLTNLTLQ-GKRPATIDAYSRAVRRISQFFDRC---------PDAMTTADLKQYFAS 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q     ++K   +G++ F ++  +++       L++    +S  LP  +  +Q   L
Sbjct: 63  LI-QTHSWSTVKLDRNGLQFFYRHTLEKEW----QWLDIVKPPQSKKLPDIITAQQVALL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDK 196
           +                R       LY  GLR+ E LSLT  +I      + I+ GKG K
Sbjct: 118 ISMTKQK----------RYQIFFLTLYTMGLRLGEGLSLTVHDIDQHTMQVHIRDGKGGK 167

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+VP+      A+  ++          +  P        P++ G  Q+ ++ + +  G+
Sbjct: 168 DRLVPVPQRTLNALRAHWLTHRH---PRLIFPGKGCNTDNPMDRGGVQKAMKLVLKDCGI 224

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
               + H+LRH FATHLL  G DLRS+Q +LGH  L+TT  YT +      D  + I
Sbjct: 225 NKPISPHSLRHGFATHLLEQGLDLRSLQILLGHASLNTTARYTRMTQIKQRDAALAI 281


>gi|300872283|gb|ADK38969.1| IntI4 [Vibrio sp. V84(2010)]
          Length = 290

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 74/307 (24%), Positives = 128/307 (41%), Gaps = 61/307 (19%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGI 95
           ++Y     +++ F        +  +        E+  F++    Q  +  ++   +L+ +
Sbjct: 1   RAYLHWITRYIHFHNKKHPSLMGDK--------EVEEFLTYLAVQGKVATKTQSLALNSL 52

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
               K + K  ++ E   +  +  +    LP  L   +   L++            +D +
Sbjct: 53  SFLYKEILKTPLSLE---IRFQRSQLERKLPVVLTRDEIRRLLEI-----------VDPK 98

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR------- 207
           +   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V L   +        
Sbjct: 99  HQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQI 158

Query: 208 ----------------------KAILEYYDLCPFDLNLNIQLPLFR--------GIRGKP 237
                                  A+ E Y   P++   +   P F+         +R   
Sbjct: 159 ALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHH 218

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R+++  LGH  + TTQI
Sbjct: 219 MNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVREQLGHTDVKTTQI 278

Query: 298 YTNVNSK 304
           YT+V  +
Sbjct: 279 YTHVLDR 285


>gi|49146142|ref|YP_025580.1| site-specific recombinase [Mycobacterium ulcerans Agy99]
 gi|42414776|emb|CAE46869.1| possible site-specific recombinase [Mycobacterium ulcerans Agy99]
          Length = 345

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 61/301 (20%), Positives = 111/301 (36%), Gaps = 24/301 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L +    R  S  T ++Y  D     + LA    + I+      L+   +RA  +   
Sbjct: 21  EFLAD-RAIRKPSPHTTKAYRQDFEAVALLLAG-GADAISTLPTNALNKESLRAAFA-VY 77

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +     S++R  S   +   +L    +   + +  +   K   +LP++        L+ 
Sbjct: 78  AETHSAASIRRCWSTWNTLCTFLYTANLLDANPMPAIGRPKVPKALPKSYTADAVNNLIA 137

Query: 140 NVLLHT-SHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQGKGDK 196
            +     S        R+ AI++     GLR  E +     +     D   L + GKG+K
Sbjct: 138 AIDTDDGSARRSNWPERDRAIIFTALLTGLRADELIRANIGDIRCNADGGVLHVSGKGNK 197

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL--------------NLNIQLPLFRGIRGKPLNPGV 242
            R +P    + + +  Y       +                +   PLF G  G+ +  G 
Sbjct: 198 DRRIPCDTKLIEMLQRYLQTREDRIPHLRKRSASPDVMGRFSPTAPLFVGSDGERITRGT 257

Query: 243 FQRYIRQLRRYLGLPLSTTA----HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            Q  I +  +  G+     A    H LRH+FAT L +    + ++  +LGH  + T+Q Y
Sbjct: 258 LQYRILRGFKKAGINNDRAAGALVHGLRHTFATELANANVSVYALMKLLGHESMVTSQRY 317

Query: 299 T 299
            
Sbjct: 318 V 318


>gi|190410500|ref|YP_001965320.1| putative integrase [Streptococcus thermophilus]
 gi|84316431|gb|ABC55707.1| putative integrase [Streptococcus thermophilus]
          Length = 314

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 69/313 (22%), Positives = 130/313 (41%), Gaps = 32/313 (10%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           + N+L  + +F+       ++  L+     S  T+++Y+   RQF  +LA        I 
Sbjct: 10  QNNSLDVVKTFDFNT-FDRFINYLDA----SPKTVETYKKALRQFFNYLA--------IN 56

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            IRQ    ++ AF    +   +   +++  ++  + F K+ ++  +   +   +++  K 
Sbjct: 57  GIRQPQREDVLAFRDDLKASGLKPTTVQNYITATRIFFKWTEQEGLYP-NIAEHVKGAKL 115

Query: 122 SNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
             +  +  L  +QA  ++ ++   T         RN AIL L+   GLR  E       +
Sbjct: 116 DKNHKKDYLTSRQAKEVLASIETDTEE-----GLRNYAILSLMVTGGLRTIEVSRADVGD 170

Query: 181 --IMDDQSTLRIQGKGDKIRIVPLLPSV--RKAILEYYDLCPFDLNLNIQLPLFR----G 232
              + + + L +QGKG + +   +  S    KAI  Y        N+    PLF      
Sbjct: 171 LRTVGENTVLFLQGKGREEKTEYIKISAPVEKAIRNYLKARG---NVEEGQPLFTSTSNN 227

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
            RGK ++       ++   +  G      TAH+LRH+  T  L  G ++  +Q    H  
Sbjct: 228 SRGKRISTRTVSAIVKNALKNAGYDSARLTAHSLRHTAITLALLAGREITEVQQFARHAN 287

Query: 292 LSTTQIYTNVNSK 304
           L+TT IY +   +
Sbjct: 288 LNTTMIYNHALDQ 300


>gi|330504266|ref|YP_004381135.1| integron integrase [Pseudomonas mendocina NK-01]
 gi|328918552|gb|AEB59383.1| integron integrase [Pseudomonas mendocina NK-01]
          Length = 321

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 76/330 (23%), Positives = 129/330 (39%), Gaps = 63/330 (19%)

Query: 22  LQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           L  L  +   R  S  T   Y    ++++ F  +            ++   EI AF++  
Sbjct: 9   LDQLRQQIRVRNYSIRTEAVYAEWAKRYIRFHHYRHP--------AEMGAAEIEAFLTHL 60

Query: 79  RTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             ++ +   +  ++L+ +    K + K  +     +  +   KK   LP  L   +   L
Sbjct: 61  AVKRDVSASTQNQALAALLFLYKEVLKLDL---PWLQGVVRAKKPKHLPVVLTRIEVDAL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDK 196
           +             +   +  +  LLYG GLR+ EAL L  +++   +  + ++ GKG K
Sbjct: 118 L-----------GQLQGDSWIVANLLYGAGLRLLEALRLRVKDVDFTRREIIVRDGKGQK 166

Query: 197 IRIVPLLPSVRKAIL------------------------------------EYYDLCPFD 220
            R+  L   V + +                                     E+     F 
Sbjct: 167 DRVTMLPMRVVEPLRQHLNKVRHVHQGDLADGFGEANLPFALARKYPNAAKEWGWQFVFP 226

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
                Q P   GI    L+    QR +R+  +  GL    T H+LRHSFATHLL  G D+
Sbjct: 227 SVNRSQDPRGHGIYRHHLHEKTIQRAVREAAQRAGLIKHATPHSLRHSFATHLLEAGQDI 286

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           R++Q +LGH  + TT IYT+V ++ G   +
Sbjct: 287 RTVQELLGHSDVKTTMIYTHVLNRGGLAVL 316


>gi|91792490|ref|YP_562141.1| integron integrase [Shewanella denitrificans OS217]
 gi|91714492|gb|ABE54418.1| Integron integrase [Shewanella denitrificans OS217]
          Length = 319

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 74/322 (22%), Positives = 127/322 (39%), Gaps = 64/322 (19%)

Query: 21  WLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +L+ +  E   R  S  T +SY    R F+                  ++   I  F+  
Sbjct: 6   FLEAIRTEIRVRHYSYQTEKSYLYWNRYFIRHCNIRHG--------ADITPALIEQFLCF 57

Query: 78  RRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              + ++   + K++L  I    +++ K     E N L     K    +P+ L+ ++A  
Sbjct: 58  LAVECEVSASTQKQALCAIVFACRHVLK----IEPNELQFPYAKAPKRIPQVLSNEEAKL 113

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195
           ++ N           +   +  I  +L+G GLR+ EAL L  ++I     ++ + +GKG 
Sbjct: 114 IISN-----------LSGYHYLIGAILFGSGLRLKEALKLRVKDIDLTTKSIFVYRGKGQ 162

Query: 196 KIRIVPLLPSVRKAIL------------------------------------EYYDLCPF 219
           K R+  L   +   +                                     +++    F
Sbjct: 163 KDRVCMLPNGLIDVLKSQMKQVKKLHEADLSDGFGLASLPISLIRKYRSNASKFHWQYIF 222

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
             +     P    +    ++P  F R +RQ     G+    TAHT RHSFAT LL  G D
Sbjct: 223 PASRRCMHPSDNYVCRHHIHPTAFSRALRQATTNCGIDKRVTAHTFRHSFATSLLLKGHD 282

Query: 280 LRSIQSILGHFRLSTTQIYTNV 301
           +R+IQ +LGH  + TT+IYT+V
Sbjct: 283 IRTIQELLGHSDVKTTEIYTHV 304


>gi|237744889|ref|ZP_04575370.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           7_1]
 gi|229432118|gb|EEO42330.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           7_1]
          Length = 290

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 58/285 (20%), Positives = 105/285 (36%), Gaps = 10/285 (3%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + K  +N++  LE E      T+ S + D  QFL +L         I T+ +L    I+ 
Sbjct: 7   IEKAIKNFIYYLEFEENKKNNTVISIKKDLNQFLEYLNRK-----NITTLDKLDELVIKE 61

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++ + +   + + +  R LS IK F KYL    +  +   + +  +K        LN  +
Sbjct: 62  YLVELKAVDLSNSTYNRRLSSIKKFYKYLINNNLKEKGKEILIEGMKNDEKKIEYLNYNE 121

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L +     T  E  +   R+  +  LLY  G+ ++E LSL   N   ++  + +   
Sbjct: 122 IALLRE-----TMKEESFNILRDRLMFELLYSSGMTVAELLSLGELNFNLEKREIYLLKN 176

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
                +          +             +    +F       L     +R I +    
Sbjct: 177 KTSKVLYFSQTCKEVYLKFLIAKKEKFKERDSSNIIFVNNSNVRLTDRSVRRLISKYSEK 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             L    + +TLRHSF  ++L NG     +  +L    +    IY
Sbjct: 237 ANLQKEISPYTLRHSFCIYMLKNGMPKEYLAKLLDLKSIGLLDIY 281


>gi|265763570|ref|ZP_06092138.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_16]
 gi|263256178|gb|EEZ27524.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_16]
          Length = 352

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 73/341 (21%), Positives = 142/341 (41%), Gaps = 24/341 (7%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
           M+  N   ++  + L E   WL+  +   +  S  T ++YE     +++FL    +    
Sbjct: 1   MKKINPQALLIAKYLNE---WLEYHVPSIKACSPYTKRNYETSVALYVMFLRSVKQISPK 57

Query: 60  IQTIRQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKI---TTESNILN 115
             + +  S   +  +I   +  +     +    LS +++FLKY+  + I   T+      
Sbjct: 58  TLSAQCFSLENMNEWILWLKEHRSCSPATCNVRLSALRAFLKYMADKDIAFMTSYLQAET 117

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           + N K        L++     L         ++      R+  ++  LY   +RI+E LS
Sbjct: 118 VPNQKTPKRKVVGLSKMAVNALF-----TVPNQRTIRGLRDYTLMLTLYSTAVRINELLS 172

Query: 176 LTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
           L   NI  D  +  + + GKG K R +PLL    + I +Y   C  + N N    LF   
Sbjct: 173 LKIGNIFTDGPKPRIIVIGKGRKKRPIPLLAKPVQYIKQYLAECHPNPN-NPDALLFYSK 231

Query: 234 R---GKPLNPGVFQRYIRQLRRYLG-----LPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
                 P++     + +++           +PL+  AH  RH+ A+H L NG ++  I  
Sbjct: 232 SRGIYVPMSAENVNKLLKRYAAIAKKICKEVPLNLHAHQFRHAKASHWLENGMNIAQISY 291

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
           +LGH  + TT +Y ++ ++     +  + ++    + ++ K
Sbjct: 292 LLGHECIQTTMVYLDITTEQESKALETLENEDQRKLQKRWK 332


>gi|169245911|gb|ACA50932.1| site-specific recombinase [Mycobacterium marinum DL240490]
          Length = 345

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 61/301 (20%), Positives = 111/301 (36%), Gaps = 24/301 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L +    R  S  T ++Y  D     + LA    + I+      L+   +RA  +   
Sbjct: 21  EFLAD-RAIRKPSPHTTKAYRQDFEAVALLLAG-GADAISTLPTNALNKESLRAAFA-VY 77

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +     S++R  S   +   +L    +   + +  +   K   +LP++        L+ 
Sbjct: 78  AETHSAASIRRCWSTWNTLCTFLYTANLLDANPMPAIGRPKVPKALPKSYTADAVNNLIA 137

Query: 140 NVLLHT-SHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQGKGDK 196
            +     S        R+ AI++     GLR  E +     +     D   L + GKG+K
Sbjct: 138 AIDTDDGSARRSNWPERDRAIIFTALLTGLRADELIRANIGDIRCNADGGVLHVSGKGNK 197

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL--------------NLNIQLPLFRGIRGKPLNPGV 242
            R +P    + + +  Y       +                +   PLF G  G+ +  G 
Sbjct: 198 DRRIPCDTKLIEMLQRYLQTREDRIPHLRKRSASPDAMGRFSPTAPLFVGSDGERITRGT 257

Query: 243 FQRYIRQLRRYLGLPLSTTA----HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            Q  I +  +  G+     A    H LRH+FAT L +    + ++  +LGH  + T+Q Y
Sbjct: 258 LQYRILRGFKKAGINNDRAAGALVHGLRHTFATELANANVSVYALMKLLGHESMVTSQRY 317

Query: 299 T 299
            
Sbjct: 318 V 318


>gi|269929227|ref|YP_003321548.1| integrase family protein [Sphaerobacter thermophilus DSM 20745]
 gi|269788584|gb|ACZ40726.1| integrase family protein [Sphaerobacter thermophilus DSM 20745]
          Length = 335

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 123/326 (37%), Gaps = 25/326 (7%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            +  +    +++ +NL     LS  + ++Y     +F   L    +       +  LS  
Sbjct: 5   AAPTIADAIEDFFENLR----LSPRSKKTYRTAVTKFTEHLKERFDLDPETSPVTALSED 60

Query: 70  EIRAFISKRRTQKIGD-------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRN---- 118
            +  F++      +         R+ + +L+ ++    YL    +    +   +R     
Sbjct: 61  HVTDFVAALMPDDVRSPEEVSRMRTAQTNLAAVRKLYAYLVSYDLHPNLSTEKLRTRVAA 120

Query: 119 --LKKSNSLPRALNEK--QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
              + +   P        + +  V ++      + +    +  A++  LY  G+R+SE  
Sbjct: 121 MMPRFTPPPPDVQTSDLDRIVEYVRSLPHEVDPDKELRRLKLRAMILFLYRTGVRVSELC 180

Query: 175 SLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF--- 230
            L  ++I     T  I + KG K R V       +A++ Y+             P F   
Sbjct: 181 GLRRRDIQLADGTASIYRAKGGKSRTVLFDSETAEALVAYWAARGDSGRGVGAFPAFSGR 240

Query: 231 --RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
              G+ G+ ++P   +  + QL    G+    T H+ RH  AT L+       ++Q+ILG
Sbjct: 241 DKVGVPGRAISPRTVEHIVAQLCVAAGVENPITPHSFRHGLATELVRRRVRESTVQTILG 300

Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIY 314
           H   +TT+IY +  +    +   E +
Sbjct: 301 HASPTTTRIYVHKVAAEVAEEYQEAF 326


>gi|237707916|ref|ZP_04538397.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229458068|gb|EEO63789.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 352

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 65/330 (19%), Positives = 132/330 (40%), Gaps = 19/330 (5%)

Query: 11  SFELLKERQNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           + ++      WL+  +   +  S  T ++Y+     +  FL                   
Sbjct: 9   AIQITSYLHEWLEYYVPSIKACSPHTKRNYKISVTLYAEFLKKVKGILPETLNAECFCRE 68

Query: 70  EIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL---NMRNLKKSNSL 125
            I  +I   +  +     +    LS +++FLKY+  R +T  +  L   N+ N K     
Sbjct: 69  YIMEWIIWMKSDRNCTPATCNVRLSALRAFLKYVANRDMTYMAVFLQAENIPNEKTPKRK 128

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD- 184
              L++K    ++        ++      R+  ++ LLY   +R++E L+L   N + D 
Sbjct: 129 VIGLSKKAVKAIL-----SVPNQRTATGFRDFTLMLLLYSTAIRVNELLTLKISNTVMDC 183

Query: 185 -QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPG 241
            +  + + GKG K R +PLL    + +  Y        N    L  +   +    P++  
Sbjct: 184 SKPHMIVIGKGRKKRPLPLLSQPVQCLKRYLKKYHPKYNDMDALIFYSKSKGVYAPMSAE 243

Query: 242 VFQRYIRQLRRYLG-----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
              + +++           +PL+  AH  RH+ A+H L NG ++  I  +LGH  + TT 
Sbjct: 244 NVNKMLKKYASIAHETCEDVPLNLHAHQFRHAKASHWLENGMNIAQISYLLGHECIQTTM 303

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
           +Y ++ ++     +  + D+      ++ K
Sbjct: 304 VYLDITTEQEEKALETLEDENQKHKKKEWK 333


>gi|332655467|ref|ZP_08421204.1| integrase/recombinase, phage integrase family [Ruminococcaceae
           bacterium D16]
 gi|332515602|gb|EGJ45215.1| integrase/recombinase, phage integrase family [Ruminococcaceae
           bacterium D16]
          Length = 327

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 63/294 (21%), Positives = 123/294 (41%), Gaps = 27/294 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++    IE G S+ TL  Y       L  +    +E +T + +R+     +  + + R++
Sbjct: 56  FINAKRIE-GCSEKTLSYYRQTIVSMLSGIDKEPQEIVT-EDLRKY----LTEYQTSRKS 109

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            K+   +++R LS   S+  +L+      +S +  +  +K +  +     ++    + DN
Sbjct: 110 SKVTIDNIRRILS---SYFSWLEDEDYIVKSPVRRIHKVKTAKVIKETYTDEALEIMRDN 166

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                       + R+ A++ LL   G+R+ E ++L   +I  ++    + GKG K RIV
Sbjct: 167 C----------CNVRDLAMIDLLASSGMRVGEMIALNRDDINFNERECVVFGKGSKERIV 216

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--RGKPLNPGVFQRYIRQLRRYLGLPL 258
                 +  +  Y      +   +    LF  +      L  G  +R +R+L + L LP 
Sbjct: 217 YFDARTKIHLQNYL-----ESRTDTCSALFVSLTAPNDRLQIGGVERRLRELGKRLNLPR 271

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
               H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V  +N      +
Sbjct: 272 -VHPHKFRRTLATSAIDKGMPIEQVQQLLGHQKIDTTMHYAMVKQQNVKLAHRK 324


>gi|309378134|emb|CBX23224.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 164

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 54/168 (32%), Positives = 88/168 (52%), Gaps = 6/168 (3%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            R+ A+L L+Y  GLR+SEA+ L   N+  D+  +   GKGDK R+VP+       +  Y
Sbjct: 1   MRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYWVGRY 60

Query: 214 YDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           Y    P  L       LF   +   ++  +    +++     G+    + H+LRH+FATH
Sbjct: 61  YTEARPVLLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIG-HISPHSLRHAFATH 119

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           L+ +G DLR +Q +LGH  L+TTQIYT++ +      + ++  + H  
Sbjct: 120 LVQHGLDLRVVQDMLGHADLNTTQIYTHIANVR----LQKVVKEHHSR 163


>gi|322433743|ref|YP_004215955.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321161470|gb|ADW67175.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 304

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 66/305 (21%), Positives = 121/305 (39%), Gaps = 42/305 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+  +  + +S  TL +Y  D + F +FLA    ++IT     Q+ +  I  FI+ 
Sbjct: 3   FEPFLEFYKNIKKVSDDTLAAYRSDLKHFGLFLATEHVDRIT-----QIDHALIAKFITY 57

Query: 78  RR--------TQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRA 128
            +           + D ++ R L+ + SF  Y          + I +  N  K N+ P+ 
Sbjct: 58  MKISGKGKGGKVGLSDATIARRLAAVSSFFDYTRATTGRKLHNPIEDFSNRWKRNNKPKP 117

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ--- 185
           + E     L+          +     R+  ++ L    GLR+ E   L    I+ +Q   
Sbjct: 118 VEEVVLEKLL----------SAITSPRDRVLINLFLATGLRLGEMEQLNRDTIVIEQHKG 167

Query: 186 ---------STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
                     T  ++GKG KIR   +          Y +    D        LF   R +
Sbjct: 168 NGPNECFVIGTGEVEGKGGKIRTFMVSQQALIPYARYVNGRKDD-----HPALFISERKQ 222

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            ++    Q  +    +  G+   T  H LRH++ T L++ G D+  ++ ++GH  ++TT 
Sbjct: 223 RMSERAMQERLAHWCKVAGVS-HTNVHRLRHTYGTRLVNAGMDILQLKELMGHSSVATTL 281

Query: 297 IYTNV 301
            Y  +
Sbjct: 282 NYAKI 286


>gi|222430247|gb|ACM50312.1| integrase [Escherichia coli]
          Length = 298

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 68/317 (21%), Positives = 126/317 (39%), Gaps = 64/317 (20%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLPTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQ 284
           SFAT LL +G D+R++Q
Sbjct: 282 SFATALLRSGYDIRTVQ 298


>gi|332796945|ref|YP_004458445.1| XerC/D integrase-recombinase protein [Acidianus hospitalis W1]
 gi|332694680|gb|AEE94147.1| XerC/D integrase-recombinase protein [Acidianus hospitalis W1]
          Length = 286

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 60/295 (20%), Positives = 116/295 (39%), Gaps = 51/295 (17%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ---------KI 83
           + T++ Y    + FL F+          +  + ++  ++  +I    ++         K 
Sbjct: 29  EGTVKLYSTAVKDFLEFIK---------KDPKSVTSEDVNRWIIHLMSKEGKIKGTEMKR 79

Query: 84  GDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
               +L+  +  ++ FLK++        + ++     +      RALNE +   L +   
Sbjct: 80  ARSVTLRNYVIAVRRFLKWIG----VNVNPVI----PRARRKEIRALNEDEINRLFEATR 131

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVP 201
                       R+  IL L    GLR  E LSL  ++I      +R++  K  + RIV 
Sbjct: 132 R----------LRDKLILRLFLDTGLRSKELLSLRVEDIDLKNRMIRVKETKNGEERIVF 181

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
                 K + +Y                    R  P+      + I++L    G+     
Sbjct: 182 FTEETEKLLRKYLTKQGS------------SERLFPMTYQALYKLIKRLGERAGI-KGLR 228

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            H LRH+FAT  +  G  L ++Q +LGH  + TTQIYT++  ++      +++++
Sbjct: 229 PHILRHTFATIAIRRGLPLPAVQRLLGHKDIKTTQIYTHLVLEDLMQAYKKVFEE 283


>gi|260778906|ref|ZP_05887798.1| integron integrase IntI2 [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605070|gb|EEX31365.1| integron integrase IntI2 [Vibrio coralliilyticus ATCC BAA-450]
          Length = 321

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 76/338 (22%), Positives = 130/338 (38%), Gaps = 67/338 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +PE   F  L+E     +++ +  G S  T +SY    R ++ +               Q
Sbjct: 1   MPEKSPF--LREV---CEHMRLS-GYSIRTEKSYLYWIRSYIFYHEKRHPM--------Q 46

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           +   E+  F+S    ++ +   + K +L+ +    +   K ++      L  R+  K   
Sbjct: 47  MGSEEVIQFLSYLANSRNVAINTQKVALNALVYLYQAFLKIELGE----LGFRHATKQRQ 102

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  +   +   ++ +           ++ +   I+ LLYG GLRISE L L  Q+I   
Sbjct: 103 LPVVITPNEVKQVLSH-----------LNGKEKLIVELLYGSGLRISECLRLRVQDIDLS 151

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAI----------------------LEYYDLCPFDL 221
             ++ ++ GKG K R   L       +                      L Y     +  
Sbjct: 152 NLSITVRDGKGKKDRQTLLSKQCVDVLKLLIEQAEQVQIADNKHGIGPSLPYAIHKKYPN 211

Query: 222 NLNIQLPLFR--------------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                  +F                     L+  V ++ + +      +    T HT RH
Sbjct: 212 AFRKLAWMFIFPSPSISHSQYNSDHPSRHHLHSSVIRKALSRAVAKTTINKKVTCHTFRH 271

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           SFATHLL  G D+RS+Q +LGH  + TTQIYT+V  ++
Sbjct: 272 SFATHLLQAGRDIRSVQELLGHNDVKTTQIYTHVIGQH 309


>gi|329769602|ref|ZP_08261006.1| hypothetical protein HMPREF0433_00770 [Gemella sanguinis M325]
 gi|328838357|gb|EGF87966.1| hypothetical protein HMPREF0433_00770 [Gemella sanguinis M325]
          Length = 301

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 62/309 (20%), Positives = 131/309 (42%), Gaps = 13/309 (4%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           + +++   L  ++  S  T+ SYE D R+  I+L     +   I++   L+   I  ++ 
Sbjct: 5   DFKDFQNYLIDKKHFSSNTVNSYERDLRKLFIYLDSNGYDCDDIRSW--LTEVCINNYME 62

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             R  K    +L R++S +  + +YL  + I  +   ++++  K +          +   
Sbjct: 63  YLRDNKYSAATLARTVSTVHVYSEYLFDKNIIKDKPQIDIKITKDAEHDLVIFTRDEIAQ 122

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           ++D             D R+ AI  L Y  G++ +E ++L  +++  +   ++ + K D 
Sbjct: 123 ILDI------DTLTLNDFRDKAIFELSYSIGIKPTECINLEMKDVNLEIGYIKYR-KQDG 175

Query: 197 IRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R V L     +AI  Y D L    + ++ +  LF    G+ ++   + +  ++ ++ L 
Sbjct: 176 YRTVALNTESIEAIRNYLDALKKHKVPISEESKLFLNHDGEGISRQGYWKIFKKRQKELE 235

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L         R+S A HLL +   ++ +Q ILG   + + + Y     K     +  ++ 
Sbjct: 236 LTKELNTMNFRNSLAVHLLEDNVPIQDVQEILGLKNIHSLKSYIKSLKK--TKAIKRMFS 293

Query: 316 QTHPSITQK 324
             HP    K
Sbjct: 294 N-HPRKAMK 301


>gi|253575298|ref|ZP_04852636.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845295|gb|EES73305.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 344

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 63/344 (18%), Positives = 135/344 (39%), Gaps = 31/344 (9%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
              L E    +L +     +   + E GL + TL  Y    + +  F+ +  E    ++ 
Sbjct: 14  ARTLHEYPRIKLDQAIDFVISAKKAE-GLRERTLVDYA---KHYGYFVDWLREAHADVEY 69

Query: 63  IRQLSYTEIRAFISKRRTQ-----------------KIGDRSLKRSLSGIKSFLKYLKKR 105
           + +++   +R  IS  +                    + D ++   L  +K+    L++ 
Sbjct: 70  VDEVTTQMVRDHISYLKYDRTRYEGHKYIPTKDQRVGLSDTTINIRLRTLKAIFNQLERD 129

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
            +   + +  ++ L++   L   L + +   ++        +   ++  R+   +  L  
Sbjct: 130 DLIEVNPLAKVKLLRQDVDLTNCLTDDEVKAIL-----AQPNRRDFVGFRDYVGIVTLLD 184

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
            GLRISE L L   +I      + + G+ +K R   ++P           L   +     
Sbjct: 185 SGLRISELLKLRAGDIDFQTRFIVLPGEMNKNRKPRMVPISAHTAKLLLQLIEENRQFFS 244

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQ 284
              LF    G+P++P  F + ++      G+     TAH  RH++A  ++ NG D  +IQ
Sbjct: 245 TDRLFMSSFGEPISPNHFNKRLKYYGEKAGVAGKKMTAHVYRHTWARAMVLNGADPFTIQ 304

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
            + G   + T + Y  +++    D + + +D+  P+     K+N
Sbjct: 305 KMGGWADMRTMRRYVQMDT----DDLRKSHDEFSPTNRFIKKRN 344


>gi|301054003|ref|YP_003792214.1| DNA integration/recombination/invertion protein [Bacillus anthracis
           CI]
 gi|300376172|gb|ADK05076.1| DNA integration/recombination/invertion protein [Bacillus cereus
           biovar anthracis str. CI]
          Length = 317

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 58/293 (19%), Positives = 120/293 (40%), Gaps = 15/293 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK-----ITIQTIRQLSYTEIR 72
            + ++++  +E  LS  TL+SYE    +F ++L      +       +  +  +    I+
Sbjct: 7   IKEYIEDRSLE-NLSHRTLESYENTLNEFRLWLNGCNGNEEEASSRAVTHVEDIKSQHIK 65

Query: 73  AFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRAL 129
            ++    + +     ++   L+ +K +  YL +  +  E  +  L ++N +K  ++   L
Sbjct: 66  DYMRYCYKERSNSHTTVAGKLTNLKVYFNYLAQEGLIEERNNPTLRVKNPRKDTNV-ETL 124

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            E+Q   ++   L        +   R+  ++  L G G R+ E + L  ++I      + 
Sbjct: 125 TEEQIRLIL-RHLRRRRRVDDFYHYRDYTLVVFLLGTGARLGEIMDLRWEDIDLKAGQV- 182

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYI 247
           +     K R     P   K I E  D   +  N    LP  LF    G+ ++    +   
Sbjct: 183 VFPDTGKARTQQGQPLGAKLISELKDYKQYLENDTYGLPAYLFTTRTGRKMSREAIKLVF 242

Query: 248 RQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            +L + L       +AH+LRH + + L+  G     +Q ++ H ++ TT  Y 
Sbjct: 243 VRLAQELNFKSGRVSAHSLRHFYCSSLIKAGVSPFVVQKLMRHSKIETTMKYV 295


>gi|325272710|ref|ZP_08139063.1| Orf28 [Pseudomonas sp. TJI-51]
 gi|324102156|gb|EGB99649.1| Orf28 [Pseudomonas sp. TJI-51]
          Length = 315

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 121/290 (41%), Gaps = 31/290 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            WL N++        T ++Y  D   F  F+     ++      R++    + A+ +   
Sbjct: 29  EWLANIDN-----PQTRRAYSIDIGDFTAFVGIVHPDQ-----FREVQRAHVLAWRADLE 78

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTE-SNILNMRNLKKSN---SLPRALNEKQAL 135
            + +   +++R L+ + S   +L         + +  ++     +     P AL + QA 
Sbjct: 79  RRVLSAATIRRKLAALTSLFDHLLDSNAVAGGNPVHGVKRPPNESNEGKTP-ALGDDQAK 137

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGK 193
            L+D               R+ A+L +L   GLR  EA  L   ++ + +    L++ GK
Sbjct: 138 ALLD-----APDLDSVKGLRDRALLAVLLYHGLRREEAAMLDVDDLQERRGVRHLKVHGK 192

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQ 249
           G K+R +PL P   + I +Y +            PLFR +RG+     L        I  
Sbjct: 193 GRKVRYLPLHPVAAERIHQYLEA----DGERTTGPLFRSVRGRTPGARLLANGIYSIIGF 248

Query: 250 LRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             +  G+ +     H LR + AT+ L +  D+  +Q+ LGH  +STT++Y
Sbjct: 249 WAKTAGIAVAGLGVHGLRATAATNALEHEADIAKVQTWLGHSNISTTRLY 298


>gi|41057046|ref|NP_957649.1| putative site-specific recombinase/integrase [Bacillus
           methanolicus]
 gi|40074231|gb|AAR39395.1| putative site-specific recombinase/integrase [Bacillus methanolicus
           MGA3]
          Length = 284

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 70/302 (23%), Positives = 130/302 (43%), Gaps = 20/302 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++ E + +L    +E G S+ T++ Y      FL + +   + + T     +L    ++ 
Sbjct: 1   MIDEFERYL----LEEGKSENTIKGYIQSVSGFLKWFSESKDVEFT-----KLHRENVKE 51

Query: 74  FISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +IS  RT +    +++   L+ +  F ++L +     +  +L  ++  K+     +L + 
Sbjct: 52  YISFLRTVKNAKPKTINTKLNALVKFNEFLVETN-VQQDMVLTKKDYMKAQQQYASLAKV 110

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ- 191
           +   +     L      K     N A++ LL   GLRISEAL+L  Q+       + ++ 
Sbjct: 111 KLKDVEKFRQLVLDSGNKR----NYALVTLLAYAGLRISEALNLKMQDFNLVSREITVRS 166

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKGDK R+V +   V+ A+  +               LF   R +PLN     +  ++  
Sbjct: 167 GKGDKFRVVFMNDKVKAALQSWLKERKE--KGIEHDFLFVSNRNQPLNRTTINKLFKEYS 224

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             +G     T H LRH F +H +S G  +  + +  GH  + TT +YTN         M 
Sbjct: 225 EPIG--KDITPHDLRHFFCSHAISRGLSVHEVANQAGHSNIHTTLLYTNPTKDELIQKMN 282

Query: 312 EI 313
           ++
Sbjct: 283 QL 284


>gi|257438273|ref|ZP_05614028.1| integrase/recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
 gi|257199350|gb|EEU97634.1| integrase/recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
          Length = 327

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 66/309 (21%), Positives = 127/309 (41%), Gaps = 31/309 (10%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E    E       ++    IE G S+ TL  Y       L  +          ++ +Q++
Sbjct: 43  EQPKAEEQDSAAAFITAKRIE-GCSEKTLTYYSKTIEAMLNGVG---------KSPQQIT 92

Query: 68  YTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
             ++R +++    +RR+ K+   +++R LS   SF  +L+      +S +  +  +K + 
Sbjct: 93  TDDLRRYLTDYQTQRRSSKVTIDNIRRILS---SFFSWLEDEDFIVKSPVRRIHKVKTAK 149

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            +     ++    + DN              R+ AI+ LL   G+R+ E ++L  ++I  
Sbjct: 150 IIRETYTDEALELMRDNC----------STVRDLAIIDLLASSGMRVGELVTLNREDINF 199

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           ++    + GKG+K R+V      +  +  Y D      + N  L +      + L  G  
Sbjct: 200 NERECVVFGKGNKERLVYFDARTKIHLQNYLDERS---DSNPALFVTLKEPHERLMIGGV 256

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +  +R+L R L L      H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V  
Sbjct: 257 ETMLRELGRRLKLNK-VHPHKFRRTLATSAIDKGMPIEQVQQLLGHQKIDTTMHYAMVKQ 315

Query: 304 KNGGDWMME 312
           +N      +
Sbjct: 316 QNVKLAHRK 324


>gi|283796718|ref|ZP_06345871.1| integrase/recombinase, phage integrase family [Clostridium sp.
           M62/1]
 gi|291075602|gb|EFE12966.1| integrase/recombinase, phage integrase family [Clostridium sp.
           M62/1]
          Length = 331

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 64/300 (21%), Positives = 128/300 (42%), Gaps = 29/300 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  + ++   ++E G S+ +L+ Y    R  L        +KI  Q + +++  ++RA++
Sbjct: 55  KIEELFIAAKKVE-GCSEKSLKYYASTIRTML--------DKIGKQVL-EITTDDLRAYL 104

Query: 76  SKRRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +  + +K   + ++      + SF  +L+      +S I  +  +K + ++    +++  
Sbjct: 105 TDYQAEKKSSKVTIDNIRRILSSFFTWLEDEDYILKSPIRRIHKVKSAATIKETYSDESL 164

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             + D          K    R+ A++ +L   G+R+ E + L   +I  D+    + GKG
Sbjct: 165 EKMRD----------KCDSLRDLAMIDMLSSTGMRVGEMVRLNRDDIRFDERECVVFGKG 214

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRR 252
           DK RIV      +  +  Y          + +  LF  +R   + L  G  +  +R+L +
Sbjct: 215 DKERIVYFDARTKIHLQNYLQSR-----TDSEPALFVSLRSPHRRLTIGGIELRLRELGK 269

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            L +P     H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V   N      +
Sbjct: 270 RLDIPK-VHPHKFRRTLATMAIDKGMPIEQLQHLLGHQRIDTTMHYAMVKQSNVKLAHKK 328


>gi|126667022|ref|ZP_01737997.1| putative integrase [Marinobacter sp. ELB17]
 gi|126628428|gb|EAZ99050.1| putative integrase [Marinobacter sp. ELB17]
          Length = 286

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 63/283 (22%), Positives = 111/283 (39%), Gaps = 26/283 (9%)

Query: 55  EEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI 113
            +  +   +  +  T + AF+      + I  R+    L+ I+SF +++   +    + I
Sbjct: 2   GKPPSSLNLEDIDATLVSAFLEDLEVNRSISARTRNLRLTAIRSFFRFVSYEEPAHSAQI 61

Query: 114 ---LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
              L + + ++   +   L   +   L+         ++ WI  R+  +L L    GLR+
Sbjct: 62  QRVLAVPDKRQDRRIVHFLARPEIEALL-----AAPDQSTWIGRRDHTLLLLAVQTGLRL 116

Query: 171 SEALSLTPQNIMDD-QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
           SE   L   +++    + +   GKG K R  PL  +V +AI E       +        L
Sbjct: 117 SELTGLDRASVVLGSDAHVHCLGKGRKERCTPLTRTVSRAIQEGLK----EPARCDSKAL 172

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLP---------LSTTAHTLRHSFATHLLSNGGDL 280
           F   +G+ L+    Q  +    +Y  +             T H LRHS A  LL  G D 
Sbjct: 173 FSTRQGRRLSADAVQYLV---AKYADITRQHCPSLKQKRITPHVLRHSAAMELLQAGVDC 229

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
             I   LGH  + TTQ+Y + +       + +I    H  I +
Sbjct: 230 SVIALWLGHESVETTQVYLHAHMALKEAALAKIDPLGHAGIKR 272


>gi|154499004|ref|ZP_02037382.1| hypothetical protein BACCAP_02996 [Bacteroides capillosus ATCC
           29799]
 gi|150271844|gb|EDM99070.1| hypothetical protein BACCAP_02996 [Bacteroides capillosus ATCC
           29799]
          Length = 327

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 124/294 (42%), Gaps = 27/294 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++    IE G S+ TL  Y       L  +    +E +T + +R+     +  + + R++
Sbjct: 56  FINAKRIE-GCSEKTLSYYRQTIVSMLSGIDKEPQEIVT-EDLRKY----LTEYQANRKS 109

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            K+   +++R LS   S+  +L+      +S +  +  +K +  +     ++    + DN
Sbjct: 110 SKVTIDNIRRILS---SYFSWLEDEDYIVKSPVRRIHKVKTAKVIKETYTDEALEIMRDN 166

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                       + R+ A++ LL   G+R+ E ++L   +I  ++    + GKG K RIV
Sbjct: 167 C----------CNVRDLAMIDLLASSGMRVGEMVALNRDDINFNERECVVFGKGSKERIV 216

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--RGKPLNPGVFQRYIRQLRRYLGLPL 258
                 +  +L Y      +   +    LF  +      L  G  +R +R+L + L LP 
Sbjct: 217 YFDARTKIHLLNYL-----ESRTDTCSALFVSLTAPHDRLQIGGVERRLRELGKRLHLPR 271

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
               H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V  +N      +
Sbjct: 272 -VHPHKFRRTLATSAIDKGMPIEQVQQLLGHQKIDTTMHYAMVKQQNVKLAHRK 324


>gi|262067704|ref|ZP_06027316.1| integrase/recombinase [Fusobacterium periodonticum ATCC 33693]
 gi|291378429|gb|EFE85947.1| integrase/recombinase [Fusobacterium periodonticum ATCC 33693]
          Length = 280

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 58/275 (21%), Positives = 114/275 (41%), Gaps = 12/275 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + K  +N++  LE E      T+ S   D  QFLI+L  +      I    +L    I+ 
Sbjct: 2   IEKSIKNFIYYLEFEENKKHNTVISIRKDLNQFLIYLNEH-----GIIDFNKLDELLIKE 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           + +K +T++I   +  R LS +K F KYL  + +  + + + + + K        L  ++
Sbjct: 57  YFTKLKTEEISVSTFNRRLSSVKKFYKYLVDKGLKEKGSEILIESEKNDEKQIEYLTPEE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                 N++  T     +   R+  +  LLY  G+ ++E LSL   N   ++  + I  K
Sbjct: 117 I-----NLVRATMQGENFNILRDRLMFELLYSSGMTVAELLSLGEVNFNLEKREIYIL-K 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRR 252
               + +    + ++  +++ +        +    + F     + L     +R I +   
Sbjct: 171 NKLSKTMYFSETCKEFYIKFLNSKKEKFKEDYNPNIIFTNNSNERLTDRSVRRLINKYGE 230

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
              L    + +TLRHSF  ++L NG     +  +L
Sbjct: 231 MANLNKEISPYTLRHSFCIYMLRNGMPKEYLARLL 265


>gi|256841220|ref|ZP_05546727.1| tyrosine recombinase XerC [Parabacteroides sp. D13]
 gi|256737063|gb|EEU50390.1| tyrosine recombinase XerC [Parabacteroides sp. D13]
          Length = 327

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 57/293 (19%), Positives = 111/293 (37%), Gaps = 25/293 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI-SKRR 79
           +L    +E G S  ++  Y       +  +          + IR ++  ++R+++   + 
Sbjct: 56  FLSAKRVE-GCSDKSMHYYRSTLNNAIRKIG---------KNIRHITTDDLRSYLNDYQL 105

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           T      ++      + SF  +L+      +S +  +  +K   ++    +++    + D
Sbjct: 106 TSGATKVTVDNIRRILSSFFSWLEDEDYIVKSPVRRIHKVKVGKTVKETYSDEALEQMRD 165

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           +              R+ A++ LL   G+R+ E + L   +I  +     + GKGDK R 
Sbjct: 166 HCE----------GIRDLALIDLLASTGMRVGELVKLNRNDIDFENRECIVTGKGDKQRR 215

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           V      +  +  Y+     D   N  L +        L     +  +R+L R L +P  
Sbjct: 216 VYFDARTKIHLQRYFAERIDD---NPALFVSLLAPYDRLQISGVEIRLRRLGRELNIPK- 271

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              H  R + AT  +  G  +  +Q +LGH  L TT  Y  VN  N      +
Sbjct: 272 VHPHKFRRTLATMAIDKGMPIEQVQHLLGHQSLDTTLQYAMVNQTNVKMSHRK 324


>gi|295090947|emb|CBK77054.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 327

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 56/296 (18%), Positives = 120/296 (40%), Gaps = 25/296 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS- 76
            + ++    IE G S+ +L+ Y       L  +          +T +Q++  ++R +++ 
Sbjct: 53  VEAFIIAKRIE-GCSEKSLKYYRKTIEALLAGIG---------KTAQQITTEDLRTYLTN 102

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            +  +     ++      + SF  +L+      +S +  +  +K +  +     ++    
Sbjct: 103 YQIQRGSSKVTIDNIRRILSSFFSWLEDEDFILKSPVRRIHKVKTAKVVKDTYTDEALEL 162

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           + DN            +AR+ AI+ LL   G+R+ E + L   +I  ++    + GKG+K
Sbjct: 163 MRDNC----------TNARDLAIIDLLASSGMRVGEMVMLNRDDIDFNERECVVIGKGNK 212

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+V      +  +  Y +      + N  L +      + L  G  +  +R++ + L L
Sbjct: 213 ERLVYFDARTKIHLQNYLNERT---DANPALFVSLKAPNERLMIGGVETRLREMGKRLNL 269

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                 H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V  +N      +
Sbjct: 270 QK-VHPHKFRRTLATSAIDKGMPIEQVQQLLGHQKIDTTMHYAMVKQQNVKLAHRK 324


>gi|218232818|ref|YP_002365323.1| integrase/recombinase [Bacillus cereus B4264]
 gi|218160775|gb|ACK60767.1| integrase/recombinase [Bacillus cereus B4264]
          Length = 308

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 56/297 (18%), Positives = 127/297 (42%), Gaps = 20/297 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + + ++  + R L   T+  Y+           F+  +KI  + + +    +I   I
Sbjct: 23  EAYEKFFKDCYL-RNLRPATIGYYKN---------EFHGAKKIINKQLVEWVQKDIEDLI 72

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            K + Q +   ++   L  ++SF  +L K K+  ++ + N++ L+        L+ ++  
Sbjct: 73  LKSK-QLMKVTTINTRLRALRSFYNFLDKNKLIDKNPMKNIKLLRDRQKTIETLDNQEIE 131

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+  +      +  ++  R+  IL +    G+R+SE + +  +++  ++  +R + K  
Sbjct: 132 KLIKTIR----KQKTFVGFRDEVILLVFLDTGVRLSELVGINVEDVRYNKLIIR-RTKNL 186

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
             R V L  + ++ +  Y  +            LF     K LNP   Q  + +  +   
Sbjct: 187 FERTVYLSDTTQERLESYIKVRGEVATNK----LFISQDNKELNPHSIQTRLTKYGKEAK 242

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           +    + HT RH+ A  ++ +G D  S+  +LGH  ++ T+ Y N+  ++      E
Sbjct: 243 ISKRVSPHTFRHTMAKRMIVSGLDAFSLMHLLGHTDITVTKRYVNLWGQDLEQKHKE 299


>gi|332521448|ref|ZP_08397902.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
 gi|332042847|gb|EGI79046.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
          Length = 279

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 132/293 (45%), Gaps = 29/293 (9%)

Query: 15  LKERQNWLQN--LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           + +   +L    L   +  S+ ++ +Y    + F  ++ F    +I + ++       I 
Sbjct: 1   MADIATFLDFQKLLKIKRYSENSINTYLGLIKSFHKYVGF----QIDLISLENKQLLAII 56

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
             I     + +   + K+  + +K F + +  R     S +   R     + LP  ++ K
Sbjct: 57  --IQIVHDKNLAYTTHKQLCAALKLFYREMYSRD-IDFSPVYPTRRP---SPLPNIISTK 110

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ- 191
           +   + ++            + ++ A+L  +Y  GLR  E +++  ++I  D++ + I+ 
Sbjct: 111 EVKAISESH----------NNIKHKAMLTAIYALGLRSGELINIKIEDINSDRNQIFIRS 160

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG K R++PL  S+R    EYY      L    +  LF G  G    P   ++  +   
Sbjct: 161 GKGRKDRVLPLPNSLRVLFREYY------LQYRPKNYLFCGRNGDKYAPESLRKVFKMAV 214

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              G+    T H+LRH++ATHL+  G D+R I+ +LGH  + TT IYT+V  K
Sbjct: 215 FKAGINKQITLHSLRHAYATHLMDRGTDVRIIKELLGHSSIKTTLIYTHVTQK 267


>gi|297527277|ref|YP_003669301.1| integrase family protein [Staphylothermus hellenicus DSM 12710]
 gi|297256193|gb|ADI32402.1| integrase family protein [Staphylothermus hellenicus DSM 12710]
          Length = 333

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 66/310 (21%), Positives = 121/310 (39%), Gaps = 49/310 (15%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + ++  LE   G S+ T+++Y    + FL FL          + +R +S  +I  + + 
Sbjct: 23  LEEFIFALEAA-GASEDTVRAYRSAIKDFLEFLGE--------KPLRNVSLRDIILWRNH 73

Query: 78  RRTQKIGDR----------SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
           R                  +L      +  F  +L           + +  ++K      
Sbjct: 74  RLKNGFSKAKTRDKKKWQTTLHYYSMFLNRFFNWLGLN--------IRIPRIRKPPRKIH 125

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            LN+ +   L+ ++           D  +  IL++L   GLR  E L +   +I  +  T
Sbjct: 126 VLNDDEIRKLLKSIR----------DPLDKLILFILLDTGLRSKELLGIRVSDIDFENRT 175

Query: 188 LRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           + +   K DK R V +     + I  + +L            L +  R  PL      + 
Sbjct: 176 ITVTSTKYDKERKVLVTSRTIELIRSWIELKN----------LGKEDRLIPLTYSGLYKR 225

Query: 247 IRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           I++L +  G+P+     H LRH+FAT  L  G  L  +Q +LGH  + TTQ+Y +V   +
Sbjct: 226 IKRLGKRAGIPVWKIRPHILRHTFATQALKKGLSLPYLQRLLGHSDIKTTQVYLHVTVDD 285

Query: 306 GGDWMMEIYD 315
                 ++ +
Sbjct: 286 IRSEYDKVME 295


>gi|255011911|ref|ZP_05284037.1| putative integrase [Bacteroides fragilis 3_1_12]
 gi|313149745|ref|ZP_07811938.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313138512|gb|EFR55872.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 327

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 60/301 (19%), Positives = 115/301 (38%), Gaps = 35/301 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             ++L    +E G S  ++  Y       +  +          + IR ++  ++R +++ 
Sbjct: 53  IDSFLSAKRVE-GCSDKSMHYYRSTLSNAIRKIE---------KNIRHITTDDLRNYLND 102

Query: 78  RR----TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            +      K+   +++R LS   SF  +L+      +S +  +  +K   ++    +++ 
Sbjct: 103 YQQISGATKVTVDNIRRILS---SFFAWLEDEDYIVKSPVRRIHKVKVGKTVKETYSDEA 159

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              + D+              R+ A++ LL   G+R+ E + L   +I  +     + GK
Sbjct: 160 LEQMRDHCE----------GIRDLALIDLLASTGMRVGELVKLNRNDIDFENRECIVTGK 209

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--RGKPLNPGVFQRYIRQLR 251
           GDK R V      +  +  Y      D        LF  +      L     +  +R+L 
Sbjct: 210 GDKQRRVYFDARTKIHLQRYLAGRIDD-----NSALFVSLLAPYDRLQISGVEIRLRRLG 264

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           R L +P     H  R + AT  +  G  +  +Q +LGH  L TT  Y  VN  N      
Sbjct: 265 RELNIPK-VHPHKFRRTLATMAIDKGMPIEQVQHLLGHQSLDTTLQYAMVNQTNVKMSHR 323

Query: 312 E 312
           +
Sbjct: 324 K 324


>gi|227461205|gb|ACP39547.1| putative integron integrase [uncultured microorganism]
          Length = 288

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 66/276 (23%), Positives = 113/276 (40%), Gaps = 52/276 (18%)

Query: 64  RQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
             L   ++ AF++   T+  +   +  ++L  I    +++ K        + N+    + 
Sbjct: 27  ASLDPLQVEAFLTALATRSHVAASTQNQALCAILFLYRHVLK---VDLPWLENIVRAVRP 83

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             LP  L   +   ++             +      +  LLYG GLR+ E L++  +++ 
Sbjct: 84  RRLPVVLTVDEVRCVLAE-----------LAGVPWLVASLLYGSGLRLHEGLTVRVKDLD 132

Query: 183 DDQSTLRIQ-GKGDKIRIVPLLPSVRK-------AILEYYDLCPFDLNLNIQLP------ 228
             +  L ++ GKG K R+  L  S+R         + E+++         + LP      
Sbjct: 133 FARRELVVRNGKGQKDRVTLLPESLRDPLVGHLTRLREWFENERRQKRPGVSLPFALAKK 192

Query: 229 ------------LFRGIRGK-----------PLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
                       LF                  L+PG  QR + +  R  GL    + HT 
Sbjct: 193 YPAASVSWGWQYLFPSASICADPYSRLPVRHHLHPGTVQRGVARAVRAAGLAKPASCHTF 252

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           RHSFATHLL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 253 RHSFATHLLDSGYDIRTVQELLGHSNVKTTMIYTHV 288


>gi|149198666|ref|ZP_01875710.1| Integron integrase [Lentisphaera araneosa HTCC2155]
 gi|149138381|gb|EDM26790.1| Integron integrase [Lentisphaera araneosa HTCC2155]
          Length = 425

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 82/350 (23%), Positives = 149/350 (42%), Gaps = 72/350 (20%)

Query: 5   NLPEIVS----FELLKERQNWLQNL----EIERGLSKLTLQSYECDTRQFLIFLAFYTEE 56
           ++P++VS     E  +  + +L  L     ++R  S  T Q+Y     ++L F+      
Sbjct: 84  SVPQVVSKVKATEESQVTKEYLAKLVEVMRLQR-KSYKTEQAYGSWVVRYLAFVKGEG-- 140

Query: 57  KITIQTIRQLSYTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
                    L+   +  FIS     + +   +  ++ + +  F +Y+ ++++   S   +
Sbjct: 141 ---------LNGENVTRFISYLAVDKDVAASTQNQAFNALVYFFRYVLEKELGDLS--QS 189

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +R ++K+  LP      + + L+             ++     ++ L+YG GLR SEA  
Sbjct: 190 LRAVRKAK-LPVVFTRDEVMALM-----------SVMEGVPLLMVRLIYGGGLRHSEAYR 237

Query: 176 LTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAIL----------------------- 211
           L  +++   +  L I+ GKGDK R VPL  S+ + +                        
Sbjct: 238 LRIKDVDTARMCLTIRSGKGDKDREVPLGDSLLEDLKNHLAQIRKLYDVDRAEEVAGCYL 297

Query: 212 -------------EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
                        E+     F  +     P    +R   + PG    + +      G+  
Sbjct: 298 PNALERKSVNKGKEWAWFWLFPASTLSIDPRADVLRRHHVAPGYLSNHYKNAIEKAGISK 357

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           S T HTLRHSFATH+L +G D+R++Q I+GH  ++TTQIYT+V  K+  +
Sbjct: 358 SATVHTLRHSFATHVLEDGYDIRTLQEIMGHNDVNTTQIYTHVMGKHKSN 407


>gi|157265299|ref|YP_001467858.1| XerD-like integrase [Thermus phage P23-45]
 gi|156905194|gb|ABU96838.1| XerD-like integrase [Thermus phage P23-45]
          Length = 327

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 64/304 (21%), Positives = 117/304 (38%), Gaps = 24/304 (7%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E  +  + +  + +L+   +E G  + TL+ YE   R  L        + +T        
Sbjct: 37  EGEAMTIEQALKEFLKEKRLE-GKREKTLRWYESTVRYLLKEHLNKPLDALT-------- 87

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
               R  + +   + +   +L      ++ F+ +L   +    +     +  K+   L  
Sbjct: 88  ----RNLVVEVLDKPVAPATLANYDRALRGFVNWLIGVEYLEHNPFKGRKRPKEEFYLKD 143

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L   +   L        +        RN++IL L  G GLR +E   L   +I+ D+  
Sbjct: 144 VLTLDEIKALF-----KAAMRDPRYRYRNASILALALGSGLRAAEICRLQVADILWDEMA 198

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           +R+ GK         +  V +  L Y  L            LF   R +PL   V   +I
Sbjct: 199 VRVHGKTG-----HGVVPVTRETLRYLRLYLDRERKATSPYLFV-HRNRPLTSEVLSHWI 252

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++  +  G+      H LRH+FAT+ L +GGD  ++Q IL H   + T  Y +  + +  
Sbjct: 253 KRQAKVAGINKKVGMHLLRHTFATNYLKSGGDPFTLQRILRHKSPAMTSRYLHFLTADLR 312

Query: 308 DWMM 311
           + + 
Sbjct: 313 ERLE 316


>gi|119945130|ref|YP_942810.1| integron integrase [Psychromonas ingrahamii 37]
 gi|119863734|gb|ABM03211.1| integron integrase [Psychromonas ingrahamii 37]
          Length = 324

 Score =  152 bits (384), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 76/314 (24%), Positives = 126/314 (40%), Gaps = 61/314 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRS 87
           +  ++ T+++Y    + ++ F           +   +    E+ AF+S    ++K+  ++
Sbjct: 16  KFYAEKTIKAYIYWIKSYIYFNNK--------KHPFECHNAEVEAFLSYLANSKKVAPKT 67

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
              +L+ +    +      +T     LN +       LP  L   +   L+ ++    + 
Sbjct: 68  QALALNALVYLYREFLDNPLTLS---LNFKRTNTQPKLPIVLTIDEVSLLLKSLSSSVTL 124

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
                        YLLYG GLR+ EA++L  Q+I  D  ++ I QGKG K R V L P +
Sbjct: 125 PC-----------YLLYGSGLRLMEAVNLRIQDINFDYLSINIWQGKGGKHRSVTLAPEL 173

Query: 207 RKAILE-------YYDLCPFDLNLN-------------------IQLPLFR--------- 231
            +++         YY       +                         LF          
Sbjct: 174 IESLQNQITKVNLYYQQDMQRTDYQGVYLPHALAGKYPNAAKELKWHYLFPSTQLSFEPG 233

Query: 232 --GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
              +R   ++    Q+ ++   R L      T HTLRHSFATHLL  G D+R++Q  LGH
Sbjct: 234 TTNLRRHHMHESNIQKAVKNAARTLDFKKQVTCHTLRHSFATHLLQRGTDIRTVQEQLGH 293

Query: 290 FRLSTTQIYTNVNS 303
             L TTQIYT+V  
Sbjct: 294 TDLRTTQIYTHVLQ 307


>gi|294507521|ref|YP_003571579.1| Tyrosine recombinase xerD [Salinibacter ruber M8]
 gi|294343849|emb|CBH24627.1| Tyrosine recombinase xerD [Salinibacter ruber M8]
          Length = 360

 Score =  152 bits (384), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 65/303 (21%), Positives = 107/303 (35%), Gaps = 53/303 (17%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  T + Y  D  QF+ F+            +R ++   ++ +    +       S KR 
Sbjct: 60  SARTQEEYARDFEQFVEFVDL---------PLRYVTLGHLQEYREHLKD-GYARSSQKRK 109

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNEKQALTLVDNVLLHTSHETK 150
           LS +KS   +  K +    +    +      N    R L+E     L+            
Sbjct: 110 LSAVKSLFTFGTKLRYFAHNVGAALSTPSVRNDRAERILSEADLWALL----------RD 159

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDD----------QSTLRIQGKGDKIRIV 200
             D RN  +L L Y  G RIS+   L  +++ D              +   GKG K R V
Sbjct: 160 ERDLRNHVLLRLFYASGGRISDVEDLRWRDLKDRPDLNGPDGRPGGQVTFFGKGGKTRAV 219

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-- 258
            L   V   I+   +    + +     P+FR  +G  L+     R +++     G+ L  
Sbjct: 220 TLYSKVWSLIIRLRENEESEGHGAADDPVFRSQKGGCLSRSQIWRVVKKAAVRAGVKLTE 279

Query: 259 --------------------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                                 + H  RH+ A+H L  G DL  ++  LGH  + TT+ Y
Sbjct: 280 KTGPEGAVKRDEEGEPIMTSEVSPHWFRHAHASHALQKGADLELVRETLGHESIETTKTY 339

Query: 299 TNV 301
            + 
Sbjct: 340 LHA 342


>gi|220683973|gb|ACL80794.1| IntIA [Vibrio splendidus]
          Length = 324

 Score =  152 bits (384), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 77/324 (23%), Positives = 131/324 (40%), Gaps = 61/324 (18%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            ++Q   + R  +  T Q+Y     Q++++           +  R L+   +  F++   
Sbjct: 8   AYIQEYMLGRHYALRTTQAYIYWIHQYILYH--------DKKHPRSLTSRHVEDFLTHLV 59

Query: 80  TQKIGD-RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +    ++   +L+ I    K + +  I  +   +  R   KS   P  +  ++     
Sbjct: 60  VDRKSAQKTQSLALNAIVFLCKEIVQEPIELD---MQFRRSDKSRKSPTVMTPEEIGRFF 116

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197
           ++                     L+YG GLR+ E L L  Q+I  D  ++R+ QGKG K 
Sbjct: 117 NHC-----------SPNFKLPYQLMYGSGLRLMECLRLRMQDIDYDYKSVRVWQGKGGKN 165

Query: 198 RIVPLLPSVRKAIL-------EYYDLCPFDLNLN-------------------IQLPLFR 231
           RIV + P +  AI        EYY     D   +                       LF 
Sbjct: 166 RIVTIAPELFPAIKLQQQKSAEYYQQDIHDKAFSGVYLPDSLAKKYPSAERSLNWQFLFP 225

Query: 232 G-----------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
                       +R   ++P   Q++I+   +   +  + + HTLRHSFATHLL +G D+
Sbjct: 226 SARLAPDLRTGELRRHHIHPTALQKHIKVASQKADIEKNISCHTLRHSFATHLLQSGADI 285

Query: 281 RSIQSILGHFRLSTTQIYTNVNSK 304
           R++Q  LGH  L TTQIYT++  +
Sbjct: 286 RTVQEQLGHTDLKTTQIYTHIIDR 309


>gi|295402694|ref|ZP_06812637.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975266|gb|EFG50901.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
          Length = 284

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 120/298 (40%), Gaps = 17/298 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + + L  E G S+ T++ Y      FL +     +        +QL    ++ +IS 
Sbjct: 2   LEQFERYLWEE-GKSENTVKGYLQSVAGFLKWFNESKD-----VEFKQLHRENVQEYISF 55

Query: 78  RRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            RT +    +++   L+ +  F ++           +L  ++  K      +L + +   
Sbjct: 56  LRTVKNAKPKTINTKLNALVKFNEF-LIEMKVQRDMVLTKKDYMKVQQQYASLAKVELKD 114

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGD 195
           +     L      K     N A++ LL   GLRISEALSL   +       + ++ GKG+
Sbjct: 115 VEKFRQLVLDSGNKR----NYALVTLLAYAGLRISEALSLKMNDFNLVSREIIVRSGKGN 170

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R+V +   V+ A+  +               LF   R K L+     +  ++   ++G
Sbjct: 171 KFRVVFMNDKVKAALQSWLKERKE--KGIESEYLFVSNRNKRLDRTTVNKLFKEYSEHIG 228

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                T H LRH F +H +S G  +  + +  GH  + TT +YTN         M ++
Sbjct: 229 --KEITPHDLRHFFCSHAISRGLSVHEVANQAGHSNIHTTLLYTNPTKDELIQKMNQL 284


>gi|183220599|ref|YP_001838595.1| putative integrase/recombinase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910707|ref|YP_001962262.1| site-specific recombinase XerD [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775383|gb|ABZ93684.1| Site-specific recombinase XerD [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167779021|gb|ABZ97319.1| Putative integrase/recombinase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 298

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 63/277 (22%), Positives = 107/277 (38%), Gaps = 33/277 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G ++ T++SY     + + +           ++   L   +I  F    R     D +L 
Sbjct: 16  GYAQKTIRSYTLCMSRLVRYFQ---------KSPLDLQPIDIYNFFLNLRQSNKTDSTLV 66

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
                   F     ++ +            K+        ++ +    + N         
Sbjct: 67  LFYCAFLFFYSLRDRKDMLELVPF-----PKRKRKAVAVFSQTEVTNFLGNC-------- 113

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRK 208
                   +I  LLY  G+RI E LSL   +I  ++  + I+ GKG   R   L      
Sbjct: 114 --TSVCEKSIFTLLYSSGIRIGEGLSLQLSDIDFERKAIFIRSGKGGHGRYAILADKTAL 171

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            + +Y ++       N +  LF   +    P++P   Q   +++R    +    T HTLR
Sbjct: 172 LLRQYLEIY------NPKSYLFFSQKGKNIPISPRTIQAAFQKIRNLSKIQKYATVHTLR 225

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           HSFATHLL +G  L  IQ +LGH  + +T IY +V+ 
Sbjct: 226 HSFATHLLEDGYSLVYIQKLLGHADIKSTMIYLHVSP 262


>gi|228927542|ref|ZP_04090595.1| Phage integrase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228832150|gb|EEM77734.1| Phage integrase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
          Length = 317

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 58/293 (19%), Positives = 120/293 (40%), Gaps = 15/293 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK-----ITIQTIRQLSYTEIR 72
            + ++++  +E  LS  TL+SYE    +F ++L      +       +  +  +    I+
Sbjct: 7   IREYIEDRSLE-NLSHRTLESYENTLNEFRLWLNGCNGNEEEASSRAVTHVEDIKSQHIK 65

Query: 73  AFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRAL 129
            ++    + +     ++   L+ +K +  YL +  +  E  +  L ++N +K  ++   L
Sbjct: 66  DYMRYCYKERSNSHTTVAGKLTNLKVYFNYLAQEGLIEERNNPTLRVKNPRKDTNV-ETL 124

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            E+Q   ++   L        +   R+  ++  L G G R+ E + L  ++I      + 
Sbjct: 125 TEEQIRLIL-RHLRRRRRVDDFYHYRDYTLVVFLLGTGARLGEIMDLRWEDIDLKAGQV- 182

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYI 247
           +     K R     P   K I E  D   +  N    LP  LF    G+ ++    +   
Sbjct: 183 VFPDTGKARTQQGQPLGAKLISELKDYKQYLENDTYGLPAYLFTTRTGRKMSREAIKLVF 242

Query: 248 RQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            +L + L       +AH+LRH + + L+  G     +Q ++ H ++ TT  Y 
Sbjct: 243 VRLAQELNFKSGRVSAHSLRHFYCSSLIKAGVSPFVVQKLMRHSKIETTMKYV 295


>gi|251779512|ref|ZP_04822432.1| phage integrase family protein, putative [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243083827|gb|EES49717.1| phage integrase family protein, putative [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 292

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 69/304 (22%), Positives = 125/304 (41%), Gaps = 19/304 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++K  + +  ++ +E G S  T+QSY  D   FL +L     E   +     L    I +
Sbjct: 1   MIKIVEEFKTHI-MEDGKSINTIQSYVGDVSAFLKYLGTMNVEFDGV-----LKRFYITS 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           + +          ++ + ++ I +F  +L  +    E+    + +LKK        +E Q
Sbjct: 55  YKNYLIDNSYEPATINKKVNSIGAFNNFLIWKGYMQEN----VIDLKKDRVKIAVGSEHQ 110

Query: 134 ALTLVDNVLLHTS---HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
                DN L          K +  R+  I+ LL   G+R+SE   +  +NI    S ++I
Sbjct: 111 VEVYSDNQLERLQFYIQNQKKVSIRDKMIIQLLMFTGVRVSELCDIKLKNIDFLLSQIKI 170

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG K+R VP        I EY      +   + +  L  G RG+ +        + + 
Sbjct: 171 IGKGGKVREVPAKFEAMDTIEEYISERNNNPYKDSEF-LILGQRGE-IQRDAVNTLLEKH 228

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDW 309
                  +    HT RH+F T L++ G  + ++  + GH  + TT + Y N + +   + 
Sbjct: 229 TVRGNFEMKLKPHTFRHTFCTRLVAKGIPITTVSKLAGHSSIETTAKFYINSSKE---EK 285

Query: 310 MMEI 313
           M  +
Sbjct: 286 MRAV 289


>gi|225378419|ref|ZP_03755640.1| hypothetical protein ROSEINA2194_04087 [Roseburia inulinivorans DSM
           16841]
 gi|225209734|gb|EEG92088.1| hypothetical protein ROSEINA2194_04087 [Roseburia inulinivorans DSM
           16841]
          Length = 328

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 60/306 (19%), Positives = 128/306 (41%), Gaps = 29/306 (9%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +  E +   + +L    IE G S+ TL  Y+   +Q L  +          +++  +   
Sbjct: 46  IDKEEVDYLEVFLSAKRIE-GCSEKTLIYYKNTIQQMLDSIG---------KSVCTIVTE 95

Query: 70  EIRAFISKRRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           ++R ++++ + +K   + ++        SF  +L+      +S +  +  +K ++++   
Sbjct: 96  DLRTYLAEYQREKQSSKVTIDNIRRIFSSFFAWLEDEDYIIKSPVRRIHRIKAASTIKET 155

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
             ++Q  ++ DN            + R+ A++ +L   G+R+ E + L   +I  D+   
Sbjct: 156 YTDEQLESMRDNCD----------NPRDLALIDILASTGMRVGELVLLNRDDISFDEREC 205

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRY 246
            + GKGDK R+V      +  +  Y      D  L+    LF  ++     +  G  +  
Sbjct: 206 IVFGKGDKERMVYFDARTKIHLQNYL-----DSRLDGNEALFVSLKAPYNRMKIGGIELR 260

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +R++ + L +      H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V   N 
Sbjct: 261 LREIGKKLNIEK-VHPHKFRRTLATVAIDKGMPIEQLQKLLGHQRIDTTLQYAMVKQSNV 319

Query: 307 GDWMME 312
                +
Sbjct: 320 KIAHRK 325


>gi|291529887|emb|CBK95472.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 327

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 58/296 (19%), Positives = 119/296 (40%), Gaps = 25/296 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L    IE G S+ TL+ Y    +  L  +          + +R +   ++R+++++
Sbjct: 53  VELFLSAKRIE-GCSEKTLKYYNATIQAMLTCVG---------KGVRHIVTDDVRSYLTE 102

Query: 78  RRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            + +    + ++      + SF  +L+      +S +  +  +K   ++     ++    
Sbjct: 103 YQEKNQSSKVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVKTGTNIKETYTDEALEL 162

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           + D+            + R+ AI+ +L   G+R+ E + L   +I  ++    + GKGDK
Sbjct: 163 MRDSC----------TELRDLAIIDMLASTGMRVGEMVLLNRADINFNERECVVFGKGDK 212

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            RIV      +  +  Y +    +   N  L +      K L     +  +R+  + LGL
Sbjct: 213 ERIVYFDARTKIHLQNYLNSRRDE---NPALFVSLQKPHKRLQISGIEVRLREYGKRLGL 269

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                 H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V   N      +
Sbjct: 270 SK-VHPHKFRRTLATMAIDKGMPIEQLQQLLGHRRIDTTLQYAMVKQSNVKIAHRK 324


>gi|91786614|ref|YP_547566.1| phage integrase [Polaromonas sp. JS666]
 gi|91695839|gb|ABE42668.1| phage integrase [Polaromonas sp. JS666]
          Length = 414

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 75/309 (24%), Positives = 123/309 (39%), Gaps = 22/309 (7%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M    LP             + ++++ ERGLS +T+ +     R FL +LA         
Sbjct: 105 MGRLQLPPAKPGAGTDLIDEFARHMQRERGLSPITINNRCWHVRAFLTWLAEQH------ 158

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           +     +  ++ AF+S R  Q     S+  + + ++SF  ++       E  +  +    
Sbjct: 159 RGAEDATLHQVDAFLSMRGVQGWCRASIATAATALRSFYAHMTATGRCAEGFVAGIEGP- 217

Query: 121 KSNSLPRALNEKQALTLVDNV-----LLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
                   L +++AL +         L+ ++   +  D R+  IL LL   GLR  E ++
Sbjct: 218 -------PLFKQEALAVGPCWDDVQRLIASTDTDQPRDIRDRVILMLLAIYGLRRGEVVA 270

Query: 176 LTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           LT  +I  ++  L + + K       PL   V  AIL Y            +L L     
Sbjct: 271 LTLDDIDWERDILHVARPKQRCKHDYPLTTEVGNAILRYVREVRPRCASR-RLFLTLKAP 329

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
             PL P      +      LG+    T  H LRH+ ATHL++ G  L+ I   LGH   S
Sbjct: 330 LVPLAPNGLHHAVASRLEALGIRCPRTGPHALRHACATHLVAEGLSLKQIGDHLGHRSAS 389

Query: 294 TTQIYTNVN 302
            T+ Y  V+
Sbjct: 390 ATRTYAKVD 398


>gi|30265160|ref|NP_847537.1| prophage LambdaBa03, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Ames]
 gi|47778394|ref|YP_022022.2| prophage lambdaba03, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187970|ref|YP_031223.1| prophage LambdaBa03, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Sterne]
 gi|165869874|ref|ZP_02214531.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0488]
 gi|167635252|ref|ZP_02393567.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0442]
 gi|167642002|ref|ZP_02400235.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0193]
 gi|170687981|ref|ZP_02879194.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0465]
 gi|170707721|ref|ZP_02898172.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0389]
 gi|177652943|ref|ZP_02935270.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0174]
 gi|190567810|ref|ZP_03020722.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis Tsiankovskii-I]
 gi|227817893|ref|YP_002817902.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. CDC 684]
 gi|229603805|ref|YP_002869354.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0248]
 gi|254686439|ref|ZP_05150298.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. CNEVA-9066]
 gi|254724438|ref|ZP_05186222.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. A1055]
 gi|254735645|ref|ZP_05193352.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Western North
           America USA6153]
 gi|254744268|ref|ZP_05201948.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Kruger B]
 gi|254755566|ref|ZP_05207599.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Vollum]
 gi|254757021|ref|ZP_05209049.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Australia 94]
 gi|30259837|gb|AAP29023.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. Ames]
 gi|47552099|gb|AAT34497.2| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181897|gb|AAT57273.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. Sterne]
 gi|164714197|gb|EDR19717.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0488]
 gi|167510052|gb|EDR85465.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0193]
 gi|167529295|gb|EDR92047.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0442]
 gi|170127278|gb|EDS96154.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0389]
 gi|170668090|gb|EDT18840.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0465]
 gi|172081718|gb|EDT66788.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0174]
 gi|190561226|gb|EDV15199.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis Tsiankovskii-I]
 gi|227006502|gb|ACP16245.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. CDC 684]
 gi|229268213|gb|ACQ49850.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0248]
          Length = 301

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 66/315 (20%), Positives = 137/315 (43%), Gaps = 19/315 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L    + ++ +L+I +  S  T+ +Y  +  Q + +L  + E    +  +  ++   I+ 
Sbjct: 2   LKDLLKEFVFDLKI-KNYSDRTIDTYNYNVGQLITYLNEHHE----VNDVEDVATFHIKK 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+  + +       +   +  ++SF KYL   +  + + +  ++ LK+   + +   + +
Sbjct: 57  FVQHQISLGKKANYINTLIKSLRSFYKYLVVEEYVSVNIMNKIKLLKEDVEVIKTFTDDE 116

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              +++     T     +++ARN  I+ +    G+R+SE ++L    I D   +LRI+GK
Sbjct: 117 VAKMIEAYDFKT-----YLNARNKVIIAMFVDTGMRMSELINLQSSWIYDT--SLRIKGK 169

Query: 194 GDKIRIVPLLPSVRKAILEY--YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G K R VP+   ++K ++ Y       F+         F    GKP+     +  ++   
Sbjct: 170 GSKWRHVPMSLMLKKYMIRYERIKAKYFEKKALEHDNYFLSRAGKPICTVQIENIVKIAG 229

Query: 252 RYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
              G+      + HT+RH      L NG DL S   I GH  +  T+ Y         + 
Sbjct: 230 LRAGVREDIRCSPHTVRHYAIQSNLRNGLDLYSCSKIAGHENIQVTKRYL---QGLEMEN 286

Query: 310 MMEIYDQTHPSITQK 324
           ++E+  +T P +  +
Sbjct: 287 ILEMAQKTSPLMNLR 301


>gi|157265417|ref|YP_001467975.1| phage XerD-like integrase [Thermus phage P74-26]
 gi|156905312|gb|ABU96955.1| phage XerD-like integrase [Thermus phage P74-26]
          Length = 327

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 64/304 (21%), Positives = 117/304 (38%), Gaps = 24/304 (7%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E  +  + +  + +L+   +E G  + TL+ YE   R  L        + +T        
Sbjct: 37  EGEAMTIEQALKEFLKEKRLE-GKREKTLRWYESTVRYLLKEHLHKPLDALT-------- 87

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
               R  + +   + +   +L      ++ F+ +L   +    +     +  K+   L  
Sbjct: 88  ----RNLVVEVLDKPVAPATLANYDRALRGFVNWLIGVEYLEHNPFKGRKRPKEEFYLKD 143

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L   +   L        +        RN++IL L  G GLR +E   L   +I+ D+  
Sbjct: 144 VLTLDEIKALF-----KAAMRDPRYRYRNASILALALGSGLRAAEICRLQVADILWDEMA 198

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           +R+ GK         +  V +  L Y  L            LF   R +PL   V   +I
Sbjct: 199 VRVHGKTG-----HGVVPVTRETLRYLRLYLDRERKATSPYLFV-HRNRPLTSEVLSHWI 252

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++  +  G+      H LRH+FAT+ L +GGD  ++Q IL H   + T  Y +  + +  
Sbjct: 253 KRQAKVAGINKKVGMHLLRHTFATNYLKSGGDPFTLQRILRHKSPAMTSRYLHFLTADLR 312

Query: 308 DWMM 311
           + + 
Sbjct: 313 ERLE 316


>gi|944942|gb|AAA74432.1| RipX [Bacillus subtilis]
          Length = 163

 Score =  152 bits (383), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 63/167 (37%), Positives = 85/167 (50%), Gaps = 6/167 (3%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
           + A+L LLY  G+R+SE + L   ++      +R  GKG K RIVP+  +   AI EY  
Sbjct: 2   DKAMLELLYATGIRVSEMIELKTADVHLSMGFIRCFGKGRKERIVPIGEAAASAIEEYMT 61

Query: 216 L-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                 L  N+   LF    G      + +   +  R         T HTLRHSFATHLL
Sbjct: 62  KARGKLLKNNVSDALFLNHHGNRSAARILEEPEKN-RIGSRHKKELTPHTLRHSFATHLL 120

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
            NG DLR++Q +LGH  +STTQIYT+V        + ++Y Q HP  
Sbjct: 121 ENGADLRAVQEMLGHADISTTQIYTHVTKTR----LKDVYKQFHPRA 163


>gi|291529765|emb|CBK95351.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 367

 Score =  152 bits (383), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 68/311 (21%), Positives = 125/311 (40%), Gaps = 44/311 (14%)

Query: 33  KLTLQSYECDTRQFLIFLAFYT---------EEKITIQTIRQLSYTEIRAFISKRRTQKI 83
            LT  +Y    + FL++L  Y           E+ T+Q + +L   +   F++  +    
Sbjct: 41  PLTQLAYLQRIQFFLMWLLDYNVYFNKKYDSIEQFTVQDLDRLKKADFEEFLNHIQKYGA 100

Query: 84  -------------------GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
                                 +    LS ++S   Y  +  I  ++ +L +R  K   +
Sbjct: 101 VLKEELDARMQTGKYIVPSKSSTRNNYLSALRSLYNYFLENDIVDKAPVLKIRQKKVDKT 160

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWID-------ARNSAILYLLYGCGLRISEALSLT 177
           +P AL ++QA ++ D +L  +   +   +       AR+ AI  L    G+R+SE +SL 
Sbjct: 161 IPIALTDRQAESIYDTILGGSEQISARQEASRIITSARDLAIYTLALHTGIRVSELVSLD 220

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN----LNIQLPLFRG- 232
            ++I  D+   +I  K     +V    +    +L++ D            + +  LF   
Sbjct: 221 VRDINLDEHCFKIIRKRGNEDVVYFDNTTENVLLDWLDERRNMKETLGIADDEDALFVST 280

Query: 233 ---IRGKPLNPGVFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILG 288
               RG  L+    +  +++  +     + +  AH+LR S AT +     DL   QS+LG
Sbjct: 281 KGKKRGTRLSVRSVEIMVKKYAQIAAPEVTNFHAHSLRSSCATKIYDKSLDLVYTQSVLG 340

Query: 289 HFRLSTTQIYT 299
           H  +STT  Y 
Sbjct: 341 HANISTTMRYV 351


>gi|296328241|ref|ZP_06870771.1| integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296154641|gb|EFG95428.1| integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 290

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 58/292 (19%), Positives = 108/292 (36%), Gaps = 10/292 (3%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + K  +N++  LE E      T+ S   D   FL +L      K  + T+ +L    I+ 
Sbjct: 7   IEKSIKNFIYYLEFEENKKNNTVISIRKDLNNFLEYL-----NKKNLVTLDKLDELVIKE 61

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++++ +   + + +  R LS IK F KYL    +  +   + +  +K        LN  +
Sbjct: 62  YLAELKAIDLSNSTHNRRLSSIKKFYKYLINNNLKEKGKEILIEGIKNDEKKVEYLNPNE 121

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L + +      E  +   R+  +  LLY  G+ ++E LSL   N   ++  + +   
Sbjct: 122 IELLREEM-----KEESFNVLRDRLMFELLYSSGMTVAELLSLGELNFNLEKREVYLLKN 176

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
                +          +             +    +F       L     +R I +    
Sbjct: 177 KISKVLYFSQTCKEVYLKFLIAKKEKFKEEDNPNIIFINNSNMRLTDRSVRRLINKYSEK 236

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             L    + +TLRHSF  ++L NG     +  +L    +    IY N+  K 
Sbjct: 237 ANLQKEVSPYTLRHSFCLYMLRNGMSKEYLAKLLDLKSIGLLDIYENLCKKE 288


>gi|89092929|ref|ZP_01165881.1| site-specific recombinase [Oceanospirillum sp. MED92]
 gi|89082954|gb|EAR62174.1| site-specific recombinase [Oceanospirillum sp. MED92]
          Length = 323

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 75/334 (22%), Positives = 131/334 (39%), Gaps = 63/334 (18%)

Query: 20  NWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
            ++Q+L      R  SK T ++Y      F+ F      +K+ +         EI  ++ 
Sbjct: 4   QFIQSLREHIRARNYSKRTEKTYVHWVLDFIRFHNRIHPQKLGV--------PEIVRYLE 55

Query: 77  KRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
               ++ +   + + +L+ +    K+   R  +    + + +   K   +P  L + +  
Sbjct: 56  YLAVKRQVSPSTQRTALNALVYLYKHYFGRDESLL-QLGSFKRATKPKKIPTVLTQHEIR 114

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKG 194
            +  +           +         L+YG GLR+ EA  L  ++I  D+ ++ I +GKG
Sbjct: 115 LIFQH-----------LQGDYLLCAKLMYGSGLRLMEACRLRIKDIDLDRLSIHIFEGKG 163

Query: 195 DKIRIVPLLPSVRK-----------------------------AILEYYDLCPFDLNLNI 225
            K RI  L                                   A+   Y   PF+ +   
Sbjct: 164 KKQRITTLSEFCVSELKNQIAHARLCWQEDKLCHDWGGCYLPPALSRKYPNAPFEFSWQY 223

Query: 226 QLPLFR---------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
            LP  +          IR   L+    QR  ++     G+    T H+LRHSFATHLL  
Sbjct: 224 LLPTKKRLVDERNDNAIRRHHLHERSMQREFKRAVLKSGIAKQATCHSLRHSFATHLLER 283

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           G D+R++Q  LGH  + TT+IYT+V ++ G   +
Sbjct: 284 GADIRTVQEQLGHSDVRTTEIYTHVLNRGGRAVI 317


>gi|228950288|ref|ZP_04112465.1| hypothetical protein bthur0007_63540 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228809450|gb|EEM55894.1| hypothetical protein bthur0007_63540 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 278

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 66/304 (21%), Positives = 125/304 (41%), Gaps = 32/304 (10%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +    +++ + E E G S  T++ Y      F  +L            + + S ++++ +
Sbjct: 1   MHILDSFINH-EKEHGKSPETIRGYHYKLLHFEKWLGAVE------TDLYEFSRSDVQQY 53

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +    +QK    ++    + I+SF ++ KK     +  I  ++        P AL  K+ 
Sbjct: 54  LDDLTSQKKSASTVNGHYAAIRSFSQFAKKTDCIKD--IRIVKAPNLYREAPVALERKEV 111

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQ- 191
           L ++  V    +         + AIL      G+R++E +SL   +I     Q T+R++ 
Sbjct: 112 LRILREVDRSGNKR-------DKAILLTCVYAGIRVAEIVSLDIDDISFSERQGTIRVRQ 164

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG+K RI+PL    R AI +Y          +    LF   R   ++    Q    +  
Sbjct: 165 GKGNKERIIPLHKEARYAISDYLKTR-----ESTAAALFLSNRQTRISKRTVQHICNKY- 218

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
                      H  RH+F T L+  G D ++IQ++ GH   +    Y +V  ++  + + 
Sbjct: 219 -------GVNPHQFRHTFVTDLVDAGIDDKTIQTLTGHESPAMITRYRSVRPEDKQNAIE 271

Query: 312 EIYD 315
            +Y 
Sbjct: 272 ALYR 275


>gi|167463333|ref|ZP_02328422.1| tyrosine recombinase xerC [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322384830|ref|ZP_08058491.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321150299|gb|EFX43801.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 317

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 65/286 (22%), Positives = 121/286 (42%), Gaps = 23/286 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           +  T ++YE   +QF  F+++   +++T + +     + I+   +K + + +   S+   
Sbjct: 34  AANTRRNYERALQQFREFISYKPFQQVTWKEVEAYKLSLIQGRFAKSK-KPLAPASVAAF 92

Query: 92  LSGIKSFLKY--LKKRKITTESNILNMRNLKKS-NSLPRALNEKQALTLVDNVLLHTSHE 148
           ++ ++SF K+       I   +  +++R      NS    L + +   L+  +       
Sbjct: 93  ITPLRSFYKWGSESNIGIFKHNPTVSVRMPPIQVNSKKHFLTKYEVGKLLQCL------- 145

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD----QSTLRI-QGKGDKIRIVPLL 203
            K    RN  I   L   GLR+SE +S+   +   D       L I + KG K R + + 
Sbjct: 146 -KQQSLRNYLIGLSLVLLGLRVSELVSMKWGDFHPDPLETSVWLTIPKAKGGKSRDIKIP 204

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
            ++ K   E+ +      N +  L LF      P++    +R I+      G+    T H
Sbjct: 205 KALWKLYTEHAETLSESANPHANLQLF------PISVRQIERIIKSAGIQSGIVKKLTPH 258

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            LRH+ AT  L  G  L+ +Q  LGH  ++TTQ Y +   +     
Sbjct: 259 WLRHTNATLALLQGASLQQVQETLGHSHINTTQRYLHTVEQMKKAA 304


>gi|54308529|ref|YP_129549.1| putative integrase [Photobacterium profundum SS9]
 gi|46912958|emb|CAG19747.1| putative integrase [Photobacterium profundum SS9]
          Length = 295

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 67/285 (23%), Positives = 118/285 (41%), Gaps = 28/285 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G    T+ +Y    R+   F                ++  +++ + +    Q     ++K
Sbjct: 24  GKRPATIDAYSRAVRRISQFFDRC---------PDAMTTADLKQYFASLI-QTHSWSTVK 73

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
              +G++ F ++  +++       L++    +S  LP  +  +Q   L+           
Sbjct: 74  LDRNGLQFFYRHTLEKEW----QWLDIVKPPQSKKLPDIITAQQVALLISMTKQK----- 124

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRK 208
                R       LY  GLR+ E LSLT  +I      + I+ GKG K R+VP+      
Sbjct: 125 -----RYQIFFLTLYTMGLRLGEGLSLTVHDIDQHTMQVHIRDGKGGKDRLVPVPQRTLN 179

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           A+  ++          +  P        P++ G  Q+ ++ + +  G+    + H+LRH 
Sbjct: 180 ALRAHWLTHRH---PRLIFPGKGCNTDNPMDRGGVQKAMKLVLKDCGINKPISPHSLRHC 236

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           FATHLL  G DLRS+Q +LGH  L+TT  YT +      D  + I
Sbjct: 237 FATHLLEQGLDLRSLQILLGHASLNTTARYTRMTQIKQRDAALAI 281


>gi|32472343|ref|NP_865337.1| integrase/recombinase Y4QK [Rhodopirellula baltica SH 1]
 gi|32443579|emb|CAD73021.1| putative integrase/recombinase Y4QK [Rhodopirellula baltica SH 1]
          Length = 348

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 80/320 (25%), Positives = 129/320 (40%), Gaps = 40/320 (12%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
           G++ PE +   L ++      +L    G +K T   Y    RQ   F            +
Sbjct: 48  GSHFPESLRLRLSEDL-----HLT---GKAKRTHDGYIRAVRQLSDFAGC---------S 90

Query: 63  IRQLSYTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
             Q++   +R F    +  +     SL+ + SGIK F  +  KR       I+ M  L+ 
Sbjct: 91  PDQVNEQHVRQFFLHLKNDRNFAYGSLRVAFSGIKFFFTHTCKRDW----EIIKMLKLQN 146

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
             +LP  L  +Q   L+                R     + +Y  GLR++EAL L   +I
Sbjct: 147 ITTLPEVLTIEQVHELI----------GSATTQRMFVYFWTVYSLGLRLNEALHLQVSDI 196

Query: 182 MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPF-------DLNLNIQLPLFRGI 233
             ++  + + +GKG K R VPL  +  + +  Y+            D   +         
Sbjct: 197 DAERGWVHVHRGKGAKDRYVPLPTTTVRLLRNYWASHRHPSFLFPADGRKHDLAKDGVSE 256

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
              P++    Q  ++Q+ + L      + HTLRHS+ATHLL  G  L+ IQ  LGH  L 
Sbjct: 257 ATTPMSETAVQGAMKQITKNLRFGKKVSIHTLRHSYATHLLEAGVGLKVIQKYLGHSSLQ 316

Query: 294 TTQIYTNVNSKNGGDWMMEI 313
           TT +Y ++      +   EI
Sbjct: 317 TTMVYLHLTDTAEANAREEI 336


>gi|126466056|ref|YP_001041165.1| phage integrase family protein [Staphylothermus marinus F1]
 gi|126014879|gb|ABN70257.1| phage integrase family protein [Staphylothermus marinus F1]
          Length = 333

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 67/310 (21%), Positives = 119/310 (38%), Gaps = 49/310 (15%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + ++  LE   G S+ T+++Y    + FL FL          + +R ++  +I  + + 
Sbjct: 23  LEEFIFTLEAA-GASEDTIKAYRSAIKDFLEFLGE--------KPLRDITLRDIILWRNY 73

Query: 78  RRTQKIGD----------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
           R                  +L      +  F ++L             +  ++K      
Sbjct: 74  RLKHGFSKAKTKDKKKWQTTLHYYSMFLNRFFEWLGLN--------FRIPRIRKPPRKIH 125

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            LN+++   L++++           D  +  IL +L   GLR  E L +   +I  +  T
Sbjct: 126 VLNDEEVHKLLESIR----------DPLDKLILSILLDTGLRSKELLGIRVSDIDFENRT 175

Query: 188 LRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           + I   K DK R V +     + I  +  L   +             R  PL      + 
Sbjct: 176 ITITSTKYDKERKVLVTSRTMELIRSWIKLNNLEKED----------RLIPLTYSGLYKR 225

Query: 247 IRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           I++L R   +P      H LRH+FAT  L  G  L  +Q +LGH  + TTQIY +V  ++
Sbjct: 226 IKRLGRRASIPAWKIRPHILRHTFATQALRKGLSLPYLQRLLGHSDIKTTQIYLHVTIED 285

Query: 306 GGDWMMEIYD 315
                 +I +
Sbjct: 286 IRSEYDKIME 295


>gi|168698263|ref|ZP_02730540.1| Phage integrase [Gemmata obscuriglobus UQM 2246]
          Length = 349

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 68/315 (21%), Positives = 105/315 (33%), Gaps = 34/315 (10%)

Query: 4   NNLPEI--VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
             LP +  +  +L +    WL      R  S  T   Y  D  QF+              
Sbjct: 36  QRLPSVNDLRSQLAEAVSAWLT-----RSPSVETRSGYARDLNQFMAHAGIAVR---AWD 87

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNL 119
            +  +    I A+  +     + + ++ R LS ++S   YL+       +      +   
Sbjct: 88  ELPHVRPGHIAAWRDQLLAAGLTNAAISRKLSVVRSLFGYLRAYGYEGPNPADTAFVAAP 147

Query: 120 KKSN-SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
                    AL  +    L+D     T         R+ A+L +L   G R+ E   L  
Sbjct: 148 PVPRDGKTVALTPEDCRRLLDATSAQTPE-----GVRDRALLAVLAFTGCRVGELCRLRV 202

Query: 179 QNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR----- 231
            +         L I+GKG K R VPL P   + +  + +            PLFR     
Sbjct: 203 GDYKTSGGHKVLEIRGKGGKERRVPLHPEAFERLDAWLETAGLQ---GATGPLFRPVRTA 259

Query: 232 ------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
                 G R  PL+    Q  + +  R L L    T H+ R +  T     G D+  +Q 
Sbjct: 260 RGGGREGFRAAPLSRRAVQVLVARYVRRLQLDPHVTVHSFRVTALTTARERGADIVDLQD 319

Query: 286 ILGHFRLSTTQIYTN 300
             GH    TT  Y  
Sbjct: 320 FAGHADPRTTLGYIR 334


>gi|145321085|gb|ABP63570.1| integrase [Pseudomonas putida]
          Length = 297

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 67/316 (21%), Positives = 125/316 (39%), Gaps = 64/316 (20%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRSI 283
           SFAT LL +G D+R++
Sbjct: 282 SFATALLRSGYDIRTV 297


>gi|330468102|ref|YP_004405845.1| integrase family protein [Verrucosispora maris AB-18-032]
 gi|328811073|gb|AEB45245.1| integrase family protein [Verrucosispora maris AB-18-032]
          Length = 333

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 71/310 (22%), Positives = 122/310 (39%), Gaps = 14/310 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR--QLSYTEI 71
           +++  + +L      R  S  T  +Y  D        A  T   + +  +R   LS   +
Sbjct: 9   VIELIEGFLTA-RATRKPSPHTQAAYRRDLIGVATLAAELTTPPLPLADLRIGALSPGLL 67

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN- 130
           R     R        S+ R+ S   SF  +L   ++   + +  +   +     P+ L  
Sbjct: 68  RT-AFARFAADRAAASVGRAWSTWNSFFTFLVAEQVVPGNPMPAVGRPRMPLPQPKPLRG 126

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           E     L+ +       +      R+ A+L L    GLR+SE L+L   ++       R+
Sbjct: 127 EDTPEQLLASAARGEGRQRDPWPERDVAVLALALCAGLRLSELLALRVGSLSGRPGERRV 186

Query: 191 Q--GKGDKIRIVPLLPSVRKAILEYYDLCPFDLN---LNIQLPLFRGIRGKPLNPGVFQR 245
           +  GKG + R++P+ P + + +  Y D          +    PL    RG+PL  G  Q 
Sbjct: 187 EVAGKGGRPRVLPVEPGLDEVLSAYLDSRVRRFGTRTVRPDSPLLVDRRGEPLRRGGLQY 246

Query: 246 YIRQLRRYLGL----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            +    R  G+    P     H LRH+FAT L  +G     I  +LGH  L+++Q Y  V
Sbjct: 247 LVESCYRRAGIGDRVPRGARLHALRHTFATRLAEDGAGAAEIMRLLGHASLASSQTYIEV 306

Query: 302 NSKNGGDWMM 311
            +    + + 
Sbjct: 307 TAVQQREAVR 316


>gi|330468061|ref|YP_004405804.1| integrase family protein [Verrucosispora maris AB-18-032]
 gi|328811032|gb|AEB45204.1| integrase family protein [Verrucosispora maris AB-18-032]
          Length = 332

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 65/285 (22%), Positives = 114/285 (40%), Gaps = 18/285 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT-EIRAFISK 77
           + WL+N    R LS+ T  +Y  D   +L +      + + +  +    Y   + + +  
Sbjct: 27  EAWLRN----RRLSEHTRDAYRRDVANWLAWCTDRHLDPLRVNFLHVNEYARTLESTLVA 82

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA--LNEKQAL 135
           R  + +   ++ R LS + S+  +L K +    + + +    +          L   +  
Sbjct: 83  RTGRPLTPATVARRLSALSSWYDFLVKLRAVDTNPVADADRPRVDRDHSATIGLTPDEVD 142

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGK 193
            L    L     +T    ARN A + LL   GLR+ E ++L   ++  ++    +R  GK
Sbjct: 143 AL----LTAADADTGPTAARNRAAIALLADLGLRVGELVALDITDLGAERGHRSVRFVGK 198

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI---QLPLFRGIRGKPLNPGVFQRYIRQL 250
           G K R   L PS   A+  Y         + +     PL     G  L+     R +R+L
Sbjct: 199 GGKARRRALTPSTAHAVDTYLAQRAAAEGVQVNELTGPLLVTASGARLDRHSVFRLVRRL 258

Query: 251 RRYLGLPL--STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            R   +P     + H+LRH+FAT   + G  L  +Q  +GH    
Sbjct: 259 ARSAQIPAWAHLSPHSLRHAFATTARAEGVPLEDVQDAMGHADPR 303


>gi|283769290|ref|ZP_06342191.1| site-specific recombinase, phage integrase family [Bulleidia
           extructa W1219]
 gi|283104100|gb|EFC05482.1| site-specific recombinase, phage integrase family [Bulleidia
           extructa W1219]
          Length = 327

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 58/296 (19%), Positives = 118/296 (39%), Gaps = 25/296 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L    IE G S+ +L+ Y+      L  L          + ++ +   +IR +++ 
Sbjct: 53  VELFLSAKRIE-GCSEKSLKYYKATIEAMLDELK---------KDVKHIVTDDIRGYLTD 102

Query: 78  RRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            + +K   + ++      + SF  +L+      +S +  +  +K   ++    +++    
Sbjct: 103 YQKKKKSSKVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVKTGTNIKETYSDEALEL 162

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           + DN            + R+ AI+ +L   G+R+ E + L   +I  ++    + GKG K
Sbjct: 163 MRDNC----------TELRDLAIIDMLASTGMRVGEMVLLNRNDIDFNERECIVFGKGSK 212

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+V      +  +  Y      D   N  L +      + L  G  +  +R+  + LGL
Sbjct: 213 ERVVYFDARTKIHLQNYLGSRTDD---NPALFVSLKSPHERLKIGGVEVRLREFGKQLGL 269

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                 H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V   N      +
Sbjct: 270 QK-VHPHKFRRTLATMAIDKGMPIEQLQQLLGHRKIDTTLQYAMVKQSNVKIAHRK 324


>gi|32472034|ref|NP_865028.1| integrase [Rhodopirellula baltica SH 1]
 gi|32397406|emb|CAD72712.1| integrase [Rhodopirellula baltica SH 1]
          Length = 348

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 80/320 (25%), Positives = 129/320 (40%), Gaps = 40/320 (12%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
           G++ PE +   L ++      +L    G +K T   Y    RQ   F            +
Sbjct: 48  GSHFPESLRLRLSEDL-----HLT---GKAKRTHDGYIRAVRQLSDFAGC---------S 90

Query: 63  IRQLSYTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
             Q++   +R F    +  +     SL+ + SGIK F  +  KR       I+ M  L+ 
Sbjct: 91  PDQVNEQHVRQFFLHLKNDRNFAYGSLRVAFSGIKFFFTHTCKRDW----EIIKMLKLQN 146

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
             +LP  L  +Q   L+                R     + +Y  GLR++EAL L   +I
Sbjct: 147 ITTLPEVLTIEQVHELI----------GSATTQRMFVYFWTVYSLGLRLNEALHLQVSDI 196

Query: 182 MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPF-------DLNLNIQLPLFRGI 233
             ++  + + +GKG K R VPL  +  + +  Y+            D   +         
Sbjct: 197 DAERGWVHVHRGKGAKDRYVPLPTTTVRLLRNYWASHRHPSFLFPADGRKHDLAKDGVSE 256

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
              P++    Q  ++Q+ + L      + HTLRHS+ATHLL  G  L+ IQ  LGH  L 
Sbjct: 257 ATTPMSETAVQGAMKQITKNLRFGKKVSIHTLRHSYATHLLEAGVGLKVIQKYLGHSSLQ 316

Query: 294 TTQIYTNVNSKNGGDWMMEI 313
           TT +Y ++      +   EI
Sbjct: 317 TTMVYLHLTDTAEANAREEI 336


>gi|32471281|ref|NP_864274.1| integrase [Rhodopirellula baltica SH 1]
 gi|32396983|emb|CAD71953.1| integrase [Rhodopirellula baltica SH 1]
          Length = 348

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 80/320 (25%), Positives = 128/320 (40%), Gaps = 40/320 (12%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
           G + PE +   L ++      +L    G +K T   Y    RQ   F            +
Sbjct: 48  GAHFPESLRLRLSEDL-----HLT---GKAKRTHDGYIRAVRQLSDFAGC---------S 90

Query: 63  IRQLSYTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
             Q++   +R F    +  +     SL+ + SGIK F  +  KR       I+ M  L+ 
Sbjct: 91  PDQVTEQHVRQFFLHLKNDRNFAYGSLRVAFSGIKFFFTHTCKRDW----EIIKMLKLQN 146

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
             +LP  L  +Q   L+                R     + +Y  GLR++EAL L   +I
Sbjct: 147 ITTLPEVLTIEQVHELI----------GSATTQRMFVYFWTVYSLGLRLNEALHLQVSDI 196

Query: 182 MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPF-------DLNLNIQLPLFRGI 233
             ++  + + +GKG K R VPL  +  + +  Y+            D   +         
Sbjct: 197 DAERGWVHVHRGKGAKDRYVPLPTTTVRLLRNYWASHRHPSFLFPADGRKHDLAKDGVSE 256

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
              P++    Q  ++Q+ + L      + HTLRHS+ATHLL  G  L+ IQ  LGH  L 
Sbjct: 257 ATTPMSETAVQGAMKQITKNLRFGKKVSIHTLRHSYATHLLEAGVGLKVIQKYLGHSSLQ 316

Query: 294 TTQIYTNVNSKNGGDWMMEI 313
           TT +Y ++      +   EI
Sbjct: 317 TTMVYLHLTDTAEANAREEI 336


>gi|118476848|ref|YP_893999.1| integrase [Bacillus thuringiensis str. Al Hakam]
 gi|118416073|gb|ABK84492.1| integrase [Bacillus thuringiensis str. Al Hakam]
          Length = 382

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 129/297 (43%), Gaps = 34/297 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-------- 81
           GL + TL++ +     F  +L  + E+     T   L    IR F+   +          
Sbjct: 85  GLVRKTLENKKGYFLVFHRYLEEHHED----VTPNTLDTNTIREFLYYLKNDHVKHKNNH 140

Query: 82  ---------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
                     +    +   +  +++F  +L + +    +    +++LK+      AL+  
Sbjct: 141 CVKEKYKSVGVSVSYINTIMKHMRAFYNFLVEEEYVQLNPFTKIKSLKEVQDNIEALSVD 200

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q  TL+        ++  +   R+  ++ LL   G+RISEAL+L  ++I    + + ++G
Sbjct: 201 QLKTLL-----KQPNQRTYAGFRDYVLMMLLADTGMRISEALNLQQEDIDFKTNVIELKG 255

Query: 193 ---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
              K  K R VP+     K + E       ++     L +F  + G  ++P  F++ ++ 
Sbjct: 256 TNTKNRKTRYVPISQKTSKLLRELLV----EIEEFDTLHIFATVYGNTIDPARFRQRLKM 311

Query: 250 LRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
                G+  +  + HT RH+FA + L N GD+ ++Q ILGH  +   + Y N+ SK+
Sbjct: 312 YGNNSGIKGVRVSPHTFRHTFAKYYLLNNGDVMTLQKILGHSSIEMVRKYINMTSKD 368


>gi|325001053|ref|ZP_08122165.1| integrase family protein [Pseudonocardia sp. P1]
          Length = 297

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 71/277 (25%), Positives = 110/277 (39%), Gaps = 30/277 (10%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT------QKIGD 85
           S  T ++Y  D R F  + A +         + ++    I  +I+   T      +    
Sbjct: 14  SANTRRAYTRDIRDFHTWCAQHG------LDLLEVRRVHIDGYIAALATPQPRTGRPAAP 67

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            ++ R LS +     Y         S +  +   +         ++ Q   L  + L   
Sbjct: 68  ATVARKLSALAGLYDYAAAEGYLPGSPLTRVERPRVG-------DDSQTTGLDRDELRRL 120

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLL 203
                    R+ A++ LL   GLRI+EALS   +++  ++    LR++ KG +   VPL 
Sbjct: 121 LAAAAADGTRSHALMLLLAHNGLRINEALSRDVEHLDTERGHQVLRLRRKGGRGATVPLS 180

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP--LSTT 261
             V  AI  Y       L+     P+F    G+ L+     R IR+L RY  LP      
Sbjct: 181 APVAHAIATY-------LDGRPTGPIFITRTGRRLDEPAAWRLIRRLARYAELPQADRIN 233

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            HTLRH+F T  L  G  LR +Q   GH    TT+ Y
Sbjct: 234 PHTLRHAFVTAALDAGVSLRDVQDGAGHSDPRTTRRY 270


>gi|56475445|ref|YP_157034.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|56311488|emb|CAI06133.1| phage-related integrase [Aromatoleum aromaticum EbN1]
          Length = 335

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 69/316 (21%), Positives = 127/316 (40%), Gaps = 60/316 (18%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSL 88
             +  T ++Y    ++F+ F       ++           E+ AF+S   T + +   + 
Sbjct: 32  HYALSTERTYCHWIKRFIFFHNKRHPIEMG--------APEVEAFLSHLATAENVSANTQ 83

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            +++  +    K++          +  +   ++S  LP  + +++   L+ +        
Sbjct: 84  NQAMHAVLYLYKHVLG---IDLPWLDGITRARESKRLPVVMTQRETQALLRH-------- 132

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVR 207
              +   +  I+ LLYG G+R+ E L L  ++I  ++  + I+ GKG+K R+  L  S+ 
Sbjct: 133 ---VHGTSGTIIKLLYGTGMRLLEGLRLRVKDIDLERREIIIREGKGNKDRVTMLPASLV 189

Query: 208 KAIL------------------------------------EYYDLCPFDLNLNIQLPLFR 231
             +                                     ++     F        P   
Sbjct: 190 DELRDHLQARRVIHDRDLSTGHADVELPHAIERKYPQAGRQWAWQYVFAAKSYSTDPRTG 249

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
             R   +   V QR +R   R  G+P     HTLRHSFA+HLL NG D+R++Q +LGH  
Sbjct: 250 IYRRHHVGEWVIQRGVRAAARAAGIPKLVHPHTLRHSFASHLLENGSDIRTVQELLGHAD 309

Query: 292 LSTTQIYTNVNSKNGG 307
           + TT IYT+V ++ G 
Sbjct: 310 VKTTMIYTHVLNRGGK 325


>gi|189423359|ref|YP_001950536.1| integrase [Geobacter lovleyi SZ]
 gi|189419618|gb|ACD94016.1| integrase domain protein SAM domain protein [Geobacter lovleyi SZ]
          Length = 362

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 60/322 (18%), Positives = 114/322 (35%), Gaps = 27/322 (8%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
            + +P+ +  +L    +NWL+         + T+++Y      +L +            T
Sbjct: 17  SSQIPDNLPADLEAAVRNWLEREVALGDPREDTIKTYTSHLNHWLRWCNARGI------T 70

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--K 120
              ++  ++ +F  +     +   S+   L+ I+ F +    R +   +   N+R    +
Sbjct: 71  PAAMTQADVESFRHELIQAGMKASSIAVKLTVIRRFYQVAMNRGLVAINPAANVRPPVAR 130

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           ++ S  + L   QA  L+    +H          R+ AI+ L+   GLR  E      ++
Sbjct: 131 EAKSEQKHLTAGQAELLI----MHLPVLGSIKGLRDRAIIALMLLEGLRRVEIKRANVED 186

Query: 181 IMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC--------PFDLNLNIQLPLFR 231
           I D +  +RI      K   +        AI  Y                      P+F 
Sbjct: 187 IEDVEGGVRILVHGKRKDGYIYPREDTVAAIRAYLAARGEVTVEETTIHHRQAFVTPMFL 246

Query: 232 GIRGK-----PLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQS 285
            +R        ++       I       GL     + H LRH+  T L     D+R++Q 
Sbjct: 247 SVRKNGRGRGRISRIGLNSVIDGYLSKAGLKRKRVSCHALRHTCGTMLYDVTKDIRAVQD 306

Query: 286 ILGHFRLSTTQIYTNVNSKNGG 307
            L H  +ST+ IY     ++  
Sbjct: 307 TLRHEDISTSAIYAASGREHKR 328


>gi|312792356|ref|YP_004025279.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312179496|gb|ADQ39666.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 314

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 66/314 (21%), Positives = 123/314 (39%), Gaps = 29/314 (9%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           IV  +  +  Q +L     E G S+ TL  Y+     F         ++           
Sbjct: 6   IVKLDWQEAMQQFLFYKRAE-GRSERTLSDYKYHITHFFDIYPNCFHDE----------- 53

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            +++  + +  +Q I   +    L+ +K+F K+  +  I   + +  +   K    +   
Sbjct: 54  QQLKKCLYEYLSQPIKPATYNLRLTYLKAFFKWCVEENILKSNPLEGLPKKKAEGRI--- 110

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
                  T +   LL    +  +   R+ A++ L    G+R  EA SL  ++       +
Sbjct: 111 ---VNIDTEILEKLLKLPDKNTFCGLRDYALILLTLDTGIRPKEAFSLLIEHFDFKTLQV 167

Query: 189 RIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            I     K    R++P+LP    A+ +   +   +   + ++P+F  + G+PL   ++  
Sbjct: 168 FIPSNAAKTRVSRVLPILPVTANAVKKLIAVRHPE--WDEKVPVFCTVTGRPLTSDIWHG 225

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            I    + LG+      + LRH+FA   L NGG   S+Q  LGH  L  T+ Y +    +
Sbjct: 226 RIEMYSKKLGV--KIRPYDLRHTFALLYLKNGGFELSLQKTLGHTTLEMTKRYVHFTQND 283

Query: 306 GGDWMMEIYDQTHP 319
               + EI     P
Sbjct: 284 ----LREINTSASP 293


>gi|298249757|ref|ZP_06973561.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297547761|gb|EFH81628.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 297

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 121/289 (41%), Gaps = 32/289 (11%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T ++Y     ++L  L          +  + ++  E++ +            ++   ++ 
Sbjct: 31  TQRAYRRFAYEYLTALG---------KPFQMIAPLELKQYAMSLEGD---AGTVAYRVNA 78

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSL-PRALNEKQALTLVDNVLLHTSHETKWID 153
           +KS   Y  K      +    +   K    L  R L E + L LV              +
Sbjct: 79  LKSLYSYATKLGYIQVNLGELLEAPKVRQKLAERILEEDEMLRLV----------AGETN 128

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMD---DQSTLRIQGKGDKIRIVPLLPSVRKAI 210
            RN A L L+Y  GLR+SE +SL  +NI       +TL + GKG++ R VP+ PS+ + +
Sbjct: 129 PRNHATLRLMYHAGLRVSEIVSLKWENIHKTKSGGATLDVWGKGEEQRYVPISPSMLEEL 188

Query: 211 LEYYDLCPF--DLNLNIQLPLFRGIRG----KPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
                  P      +     +F+G +      PL+     R +++  + +G+  + + H 
Sbjct: 189 EALPGRLPLLTRSTVGNDRYVFQGRKSKGGSIPLDTRHVHRIVQEAAKRVGIEDNVSPHW 248

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            RH+ A+H L NG  +  +Q  LGH  L+TT  Y +V +  G    ++ 
Sbjct: 249 FRHANASHSLDNGAPISVVQQSLGHKSLATTMKYLHVKADTGTSQYLKA 297


>gi|119491191|ref|ZP_01623288.1| recombinase [Lyngbya sp. PCC 8106]
 gi|119453532|gb|EAW34693.1| recombinase [Lyngbya sp. PCC 8106]
          Length = 345

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 62/304 (20%), Positives = 127/304 (41%), Gaps = 22/304 (7%)

Query: 14  LLKERQNWLQNLEIERG-LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           LL+   ++L  L++  G  +  TL +Y+    QFL +               +++  +I+
Sbjct: 21  LLEVFADFLD-LDVGAGDAATDTLITYKRQLIQFLDWCDQRQLHP------AEINKNDIK 73

Query: 73  AFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
            +      +      ++   LS ++ F +   ++ + T +    ++  K+ +     +  
Sbjct: 74  KYRRWMIDKKGFKPATIALKLSVVRRFYQAAMEKGLLTVNPATGVKAPKEKHDPAEKITY 133

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLR 189
            +A   V+ +      +     AR+ A+L +L   G R  E       +I+       +R
Sbjct: 134 LEASE-VEQLFATIPDDGSLKSARDKALLAILTLEGPRTVELHRANICDIVRQGKNWGIR 192

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGK----PLNPGVFQ 244
           ++GK + IRIVPL P + + +  Y +     +  L    PLF  +  +     ++    +
Sbjct: 193 VEGKRN-IRIVPLTPEIAQLLRVYLERREAAEGQLKPSSPLFVAVGNRAGGKRISRRGIR 251

Query: 245 RYIRQLRRYLGLP----LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             +    +   L      + + H+LRH+  T  L +G +LR +Q +LGH    TT IY +
Sbjct: 252 LIVDGYLKEAQLKQTPGRTLSTHSLRHTAGTLALRSGAELRQVQDLLGHADPRTTCIYAH 311

Query: 301 VNSK 304
           V  +
Sbjct: 312 VGDR 315


>gi|330900242|gb|EGH31661.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 299

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 68/274 (24%), Positives = 111/274 (40%), Gaps = 24/274 (8%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T ++Y+ D R F  F+     E+      R ++   + A+ ++   + +   +++R L
Sbjct: 39  PRTRRAYQADLRDFCSFVGLAGAEE-----FRAVNRAHVLAWRAQLERRALSGATIRRKL 93

Query: 93  SGIKSFLKYLKKRK-ITTESNILNMRNLKKSN---SLPRALNEKQALTLVDNVLLHTSHE 148
           + + S   YL     +   + +  +   K        P AL + QA  L+D         
Sbjct: 94  AALASLFDYLLNNNALAGGNPVHGVARPKVETNEGKTP-ALGDDQAKRLLD-----APDA 147

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSV 206
                 R+ AIL +L   GLR  E   L   ++ + +    LRI GKG KIR +PL P  
Sbjct: 148 ESLQGVRDRAILAVLLYQGLRREELSLLQTGDLQERRGVKHLRIHGKGGKIRYLPLHPVA 207

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLP-LSTT 261
            + I  Y  +   D  L     LFR  RGK     +        + +      +      
Sbjct: 208 AERIYVYL-VRDGDRALTP-GALFRSQRGKTSGTGITGKGVYGVVTKWASAAQIRVDGLG 265

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            H LR + AT+ L +  D+  +Q  LGH  +STT
Sbjct: 266 VHGLRATAATNALEHDADIAKVQIWLGHANISTT 299


>gi|160873053|ref|YP_001557059.1| integron integrase [Shewanella baltica OS195]
 gi|160858575|gb|ABX51799.1| integron integrase [Shewanella baltica OS195]
          Length = 319

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 75/322 (23%), Positives = 128/322 (39%), Gaps = 64/322 (19%)

Query: 21  WLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +L+ +  E   R  S  T +SY    R F+                  ++ T I  F+  
Sbjct: 6   FLEAIRTEIRVRHYSYQTEKSYLYWNRYFIRHCYIRHG--------ADITPTLIEQFLCF 57

Query: 78  RRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              + ++   + K++L  I    +++ K     E N L     K    +P+ L+ ++A  
Sbjct: 58  LAVECEVSASTQKQALCAIVFACRHVLK----IEPNELQFPYAKAPKRIPQVLSNEEAKL 113

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195
           ++ N           +   +  I  +L+G GLR+ EAL L  ++I     ++ + +GKG 
Sbjct: 114 IISN-----------LSGYHYLIGAILFGSGLRLKEALKLRVKDIDLTTKSIFVYRGKGQ 162

Query: 196 KIRIVPLLPSVRKAIL------------------------------------EYYDLCPF 219
           K R+  L   +   +                                     +++    F
Sbjct: 163 KDRVCMLPNGLIDVLKSQMKQVKKLHEADLSDGFGLASLPISLIRKYRSNASKFHWQYLF 222

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
             +     P    +    ++P  F R +RQ     G+    TAHT RHSFAT LL  G D
Sbjct: 223 PASRRCMHPSDNYVCRHHIHPTAFSRALRQATTNCGIDKRVTAHTFRHSFATSLLLKGHD 282

Query: 280 LRSIQSILGHFRLSTTQIYTNV 301
           +R+IQ +LGH  + TT+IYT+V
Sbjct: 283 IRTIQELLGHSDVKTTEIYTHV 304


>gi|157502123|ref|YP_001485222.1| TnpI resolvase [Bacillus thuringiensis]
 gi|228911345|ref|ZP_04075148.1| TnP I resolvase [Bacillus thuringiensis IBL 200]
 gi|228943117|ref|ZP_04105604.1| TnP I resolvase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228956360|ref|ZP_04118192.1| TnP I resolvase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228969737|ref|ZP_04130512.1| TnP I resolvase [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228975589|ref|ZP_04136137.1| TnP I resolvase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228982244|ref|ZP_04142527.1| TnP I resolvase [Bacillus thuringiensis Bt407]
 gi|135957|sp|P10020|TNRI_BACTU RecName: Full=TnP I resolvase
 gi|40317|emb|CAA31832.1| TnpI resolvase [Bacillus thuringiensis]
 gi|40348|emb|CAA30491.1| unnamed protein product [Bacillus thuringiensis]
 gi|87133428|gb|ABD24338.1| TnpI resolvase [Bacillus thuringiensis]
 gi|117553204|gb|ABK35132.1| putative Tn4430 TnpI resolvase [Bacillus thuringiensis serovar
           aizawai]
 gi|145559600|gb|ABP73626.1| TnpI resolvase [Bacillus thuringiensis]
 gi|228777484|gb|EEM25768.1| TnP I resolvase [Bacillus thuringiensis Bt407]
 gi|228784127|gb|EEM32158.1| TnP I resolvase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228789977|gb|EEM37784.1| TnP I resolvase [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228803317|gb|EEM50104.1| TnP I resolvase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228816555|gb|EEM62693.1| TnP I resolvase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228848282|gb|EEM93133.1| TnP I resolvase [Bacillus thuringiensis IBL 200]
 gi|326943288|gb|AEA19183.1| TnpI resolvase [Bacillus thuringiensis serovar chinensis CT-43]
 gi|326943302|gb|AEA19197.1| TnpI resolvase [Bacillus thuringiensis serovar chinensis CT-43]
 gi|326944009|gb|AEA19895.1| TnpI resolvase [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 284

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 74/299 (24%), Positives = 122/299 (40%), Gaps = 19/299 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +   + +   L+ E   ++ T+Q Y    RQ++ +     + K+T     +L    I  +
Sbjct: 1   MDVAKQFSSYLKQE-NKTENTVQGYTSGIRQYIKWFEGSYDRKLT-----KLYRQNILEY 54

Query: 75  ISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           IS  +  K +  +S+   +S +  F ++L ++    +  IL    +K         +  Q
Sbjct: 55  ISYLKNVKMLNAKSINHKISSLAKFNEFLIQKGSQQDQVILKTDMIKVQT---VYASPTQ 111

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-G 192
            + L     L +  E    + RN AI  LL   G+RISEALS+   +         I+ G
Sbjct: 112 IVELDVKKFLQSVLEDN--NKRNYAIATLLAYTGVRISEALSIKMNDFNLQTGECIIRSG 169

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K RIV L   V  AI +Y          +    LF   + + L+  V  R  +    
Sbjct: 170 KGGKQRIVLLNSKVLSAIKDYLIDRKTYSTAHESPYLFISKKREKLDRTVVNRIFKSYSN 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
                   T H LRH F T+ +  G  +  + +  GH  + TT +YTN N     + M 
Sbjct: 230 V------ITPHQLRHFFCTNAIEKGFSIHEVANQAGHSNIHTTLLYTNPNQLQLKNKME 282


>gi|325261264|ref|ZP_08128002.1| integrase/recombinase [Clostridium sp. D5]
 gi|324032718|gb|EGB93995.1| integrase/recombinase [Clostridium sp. D5]
          Length = 340

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/304 (24%), Positives = 124/304 (40%), Gaps = 18/304 (5%)

Query: 20  NWLQNLEIERGL-SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            +L++   E+ L S+ T+++Y      F  ++       I        ++  + +++   
Sbjct: 17  EFLEHYLPEQALKSRNTVETYRDALTVFRRYVTDTLHLSIRSFGFEDCTHDFLLSYMEFL 76

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL---NMRNLKKSNSLPRALNEKQAL 135
                 + +    L+ I+++L Y+    I+ +S  L   ++  LK        L  +   
Sbjct: 77  NKNGNAETTCNNRLAAIRAYLWYVADGDISLQSVALTASHVPFLKVPK-----LTREMIF 131

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGK 193
                 LL    +TK I  R+  IL LLY   +R+SE LSL   ++  D     LRI GK
Sbjct: 132 KDDLKALLSAPPDTK-IGRRDQMILILLYDSAVRVSELLSLDVSSVNLDAEIPYLRIYGK 190

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRR 252
           GDK RIV +  +    I  Y          +  L       R   ++ G  +R I++   
Sbjct: 191 GDKERIVAITDTTAGHIRNYLKAYYPTRVPDSPLIYTVIKGRKDRMSVGNVERIIKKYAS 250

Query: 253 YL-----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +      LP     H +R + AT+L  +G +L  I  ILGH    TT+IY   + +   
Sbjct: 251 KIRPEHPNLPEHCYPHMVRRTRATNLYQDGTELELISRILGHSSTETTRIYAVPSVEMMR 310

Query: 308 DWMM 311
             M 
Sbjct: 311 KAME 314


>gi|218754647|ref|ZP_03533443.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           GM 1503]
 gi|289763070|ref|ZP_06522448.1| integrase/recombinase xerC [Mycobacterium tuberculosis GM 1503]
 gi|289710576|gb|EFD74592.1| integrase/recombinase xerC [Mycobacterium tuberculosis GM 1503]
          Length = 285

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 95/223 (42%), Gaps = 2/223 (0%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           ++  L+ + +R++++          +L R  S +K+F  +  +R +        ++  K 
Sbjct: 44  SLDALTLSVLRSWLAATAGAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKA 103

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
             +LP  L + QAL  +       + +   +  R+  I+ LLY  G+R+SE   L   +I
Sbjct: 104 RRTLPAVLRQDQALRAM-AAAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDI 162

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNP 240
                 +R+ GKG+K R VP       A+  +       L        L  G RG+ L+ 
Sbjct: 163 DTGHRLVRVLGKGNKQRTVPFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDV 222

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
              +  + Q    +        H LRHS ATHLL  G DLR +
Sbjct: 223 RQARTAVHQTVAAVDGAPDMGPHGLRHSAATHLLEGGADLRVV 265


>gi|120553910|ref|YP_958261.1| phage integrase family protein [Marinobacter aquaeolei VT8]
 gi|120323759|gb|ABM18074.1| phage integrase family protein [Marinobacter aquaeolei VT8]
          Length = 283

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 74/287 (25%), Positives = 124/287 (43%), Gaps = 34/287 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ  +Q +  + G S  T +SY         +           ++  QL   +++ + + 
Sbjct: 5   RQAMIQTMR-QHGFSPQTQKSYLYVVADLARYYR---------RSPDQLEVGDLQTYFNY 54

Query: 78  R-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             + + +   S +  L GI+        + +      +N+   K+   +P  L  +    
Sbjct: 55  LVQERSLAPASCRLYLHGIRFLY----LQVLHWADFDVNLVLPKRPQRIPELLTRQDVAR 110

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195
           +V              + ++ A+L + YGCGLR+SEA+SL  +NI  ++  L I QGKG 
Sbjct: 111 IVGATK----------NPKHRALLLITYGCGLRVSEAVSLQVKNIDGERHLLHIHQGKGG 160

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG--IRGKPLNPGVFQRYIRQLRRY 253
           K R+VPL   +   +  Y+ L          L LF    + G+ L     Q+  R  +R 
Sbjct: 161 KDRMVPLTDVLLDVLRAYWCLG------RPVLWLFPSEVLVGQHLTATTAQKVYRHAKRL 214

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            G+      H LRH++ATH L +G  L  +Q  LGH  L TT+ Y +
Sbjct: 215 SGVQRRGGIHALRHAYATHQLEHGVPLNELQKYLGHSDLRTTERYLH 261


>gi|52079925|ref|YP_078716.1| lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme,
           catalytic core [Bacillus licheniformis ATCC 14580]
 gi|52785296|ref|YP_091125.1| hypothetical protein BLi01531 [Bacillus licheniformis ATCC 14580]
 gi|52003136|gb|AAU23078.1| Hypothetical Lambda integrase-like, N-terminal,DNA
           breaking-rejoining enzyme, catalytic core [Bacillus
           licheniformis ATCC 14580]
 gi|52347798|gb|AAU40432.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 352

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 53/320 (16%), Positives = 120/320 (37%), Gaps = 33/320 (10%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQ------- 81
           GL+K T+  Y         F            ++  +     R +++     +       
Sbjct: 39  GLTKETIDRYRRVCESVEEFAEIKGLS----TSVESIDVEFARQYMTYILHEKKTFKGHR 94

Query: 82  ---------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
                        +     L  +++   +  K  + +E+    +  +K+   + + L+ +
Sbjct: 95  YKPESVKTPGCSPKYANDHLKTMRAVFTFCIKENMISENPFQKINKVKQPEPVIQILSVE 154

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L+      T ++ K+ + R+  ++  L     RI E ++L  +NI  + S + ++ 
Sbjct: 155 EMKQLL-----KTPNKRKFSEFRDYVVMMCLINSMCRIGEIVTLEIENINFELSYIILEA 209

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           +  K R   ++P  +  +     L   +        +F    G  L    F++ +     
Sbjct: 210 QKTKTRKGRMIPLDKNTMQLLKKLLLRNTRFKPSKYVFITEEGTRLTTDNFRKRLADYAH 269

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN------SKNG 306
             G+      H  RH+ A+  L  GGDLR +Q+I+GH  L     YT+++       ++ 
Sbjct: 270 QAGINKRVHPHLFRHTAASMFLQAGGDLRHLQTIIGHKDLRMVLRYTHLSLESLARQQSE 329

Query: 307 GDWMMEIYDQTH-PSITQKD 325
              + ++ D  + P  T++ 
Sbjct: 330 YSLINQVVDGLNKPRKTKRK 349


>gi|300863888|ref|ZP_07108808.1| Integrase family protein [Oscillatoria sp. PCC 6506]
 gi|300338109|emb|CBN53954.1| Integrase family protein [Oscillatoria sp. PCC 6506]
          Length = 288

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 64/308 (20%), Positives = 126/308 (40%), Gaps = 34/308 (11%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
            ++S E      + L N+ +  G SK T   Y    ++FL F           + +  ++
Sbjct: 2   ALLSAEKTDTATDQLLNMWLH-GKSKRTQSYYRLYAQRFLEFAG---------KPLLLVT 51

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP- 126
             E++ F +      +   + +  ++ +KS L +  K +I   +    +   K  ++L  
Sbjct: 52  LAEVQGFATSLEQNNLSASTQRTIMAAVKSLLSFGTKIEILPRNVGAPLPLPKAPDTLSE 111

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDD 184
           R L+E + LT++D             + RN  I+  LY  G R+SE  +L  ++  I ++
Sbjct: 112 RLLSEIEVLTMIDLE----------SNLRNKLIIKTLYYGGFRVSELCALKWKHLSIRNN 161

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-----LN 239
           +  + + GKG K R V +  S+      + +L     +     P+FR  +        L 
Sbjct: 162 KGQITVTGKGIKTRTVLIPASL------WVELQRLRGDSGENEPVFRSQKHSHDGQGHLQ 215

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                + ++   +   +    + HTLRH+ A+H L  G  +  +   LGH  ++ T  Y 
Sbjct: 216 REWVHKIVQAAAKPAKITGKVSPHTLRHAHASHALERGAKIHLVSETLGHSSIAITSRYL 275

Query: 300 NVNSKNGG 307
           +    +  
Sbjct: 276 HAQPDDSS 283


>gi|228990374|ref|ZP_04150339.1| Integrase/recombinase [Bacillus pseudomycoides DSM 12442]
 gi|228768900|gb|EEM17498.1| Integrase/recombinase [Bacillus pseudomycoides DSM 12442]
          Length = 306

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 129/294 (43%), Gaps = 15/294 (5%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSL 88
            LS  T+QSY     +F  F +    E I  + IR+ +   +++++   ++T+     + 
Sbjct: 18  NLSPRTIQSYMATLHEFQEFCSER--ELIDTRDIREAT---VKSYLMYCQKTRGNNVVTR 72

Query: 89  KRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
              L  +K F  YL+   I +E  + I  M+  K+   +     ++    ++       +
Sbjct: 73  NTKLHHLKIFFNYLQHEDIISEKENPIRKMKLAKEDIKI-EVFQDEHIKQMLRYYRRLKT 131

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
               +   R+  I+  L G G R+ E +++    +     T+ + GK  K + VPL   +
Sbjct: 132 RNKSFYAYRDHTIIIFLLGTGSRLGELINIRWSELDLVNQTVTLFGKARKQQTVPLTNKL 191

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTL 265
            K   EY      +L   +   +F    GK ++P   +   ++L++ +    +  +AHT 
Sbjct: 192 VKEFCEYKVFMERELG-RLPEYVFTTREGKQMSPNSVKLIFKRLKQVMNFSDVRLSAHTF 250

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           RH+FA   L  G D+ ++Q +L H  L  T+ Y ++     G  + E  D+ +P
Sbjct: 251 RHTFAHRCLMAGMDVFTLQRMLRHSNLRMTERYLSL----WGTALREQNDKFNP 300


>gi|312135654|ref|YP_004002992.1| integrase family protein [Caldicellulosiruptor owensensis OL]
 gi|311775705|gb|ADQ05192.1| integrase family protein [Caldicellulosiruptor owensensis OL]
          Length = 310

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 66/314 (21%), Positives = 125/314 (39%), Gaps = 29/314 (9%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           IV  +  +  Q +L       G S+LTL+ YE     F         ++  ++       
Sbjct: 6   IVKLDWQEALQQFLFFKRAV-GRSELTLRDYEYHITHFFKLYPNCFHDEQQLKKC----- 59

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +  ++S    Q +   +    L+ +K+F K+  +  I   + +  +   K    +   
Sbjct: 60  --LLEYLS----QPVKPATYNLRLTYLKAFFKWCVEENILKSNPLEGLPKKKAEGRI--- 110

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
                  T +   LL    +  +   R+ A++ L    G+R  EA SL  ++       +
Sbjct: 111 ---VNIDTEILEKLLKLPDKNTFCGLRDYALILLTLDTGIRPKEAFSLLIEHFDFKTLQV 167

Query: 189 RIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            I     K    R++P+LP    A+ +   +   +   + ++P+F  + G+PL   ++  
Sbjct: 168 FIPSDAAKTRVSRVLPILPVTANAVKKLIAVRHPE--WDDKVPVFCTVTGRPLTRDIWHD 225

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +    + LG+      + LRH+FA   L NGG   S+Q  LGH  L  T+ Y +    +
Sbjct: 226 RMEMYSKKLGV--KIRPYDLRHTFALLYLKNGGYELSLQKTLGHTTLEMTKRYVHFTQND 283

Query: 306 GGDWMMEIYDQTHP 319
               + EI +   P
Sbjct: 284 ----LREINNSASP 293


>gi|325680339|ref|ZP_08159898.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324107968|gb|EGC02225.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 327

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 56/296 (18%), Positives = 124/296 (41%), Gaps = 29/296 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +++ +  IE G S+ +L+ Y+      L+ +          + ++ +   ++R +++  +
Sbjct: 55  SFISSKRIE-GCSEKSLKYYQKTITNMLVAVG---------KQVKHIDTDDLRKYLTSYQ 104

Query: 80  TQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                 R ++      + SF  +L++     +S +  +  +K ++++     ++    + 
Sbjct: 105 EDNNSSRVTIDNIRRILSSFFSWLEEENYIMKSPVRRIHKIKTASTIKDTYTDEALEQMR 164

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D+            D R+ A++ +L   G+R+ E + L   +I  ++    + GKG+K R
Sbjct: 165 DDC----------TDLRDLALIDMLASTGMRVGELVLLNRSDIDFEERECVVLGKGNKER 214

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGL 256
           IV      +  + +Y      D   +    LF  ++   K L  G  +  IR++ + L +
Sbjct: 215 IVYFDARTKLHLKQYL-----DSRTDDNEALFVSLKAPHKRLKIGGVEVRIRKIGKRLNI 269

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                 H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V   N      +
Sbjct: 270 QK-AHPHKFRRTLATMAIDKGMPIEQLQQLLGHRRIDTTLQYAMVKQSNVKIAHRK 324


>gi|313652036|ref|YP_004046714.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940787|gb|ADR19978.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672]
          Length = 318

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 66/311 (21%), Positives = 124/311 (39%), Gaps = 18/311 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L K ++N+L  L+ +   SK T+ +Y  +   F+ F   + ++      I  ++   I+ 
Sbjct: 13  LQKHKENFLNELKSQ-NYSKNTITAYSQEIDYFIEFFRGFQDDM----EIIDINRPFIQQ 67

Query: 74  FISKR----RTQKIGDRSLKRSLSGIKSFLKY--LKKRKITTESNILNMRNLKKSNSLPR 127
            +  R    +T KI   + K  L  +  F  Y       I   + + +   +K       
Sbjct: 68  SLIFREENSKTGKIATNTKKMYLKALYQFFVYLTDAMNGIKDFTTLFSKIKIKAETRQKE 127

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-----IM 182
            LNE +   L++ + +  +    +I  RN  ++ +L   G+R SE +++   +       
Sbjct: 128 YLNEVEIKRLLNYINVKKNKRMSFITCRNILLIKILLYTGMRASEVINIKLSDITTYEQD 187

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
            +   +RI GKG+K     +        LE   L    LN+  +  LF    G+ +    
Sbjct: 188 KNIIQIRIIGKGNKEGFCYIDHLKISEELEDTLLFRKRLNITSE-YLFTTKTGRQMTRQE 246

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                  + +  G+      H  RH+   HL   G  +  IQ IL H  ++TT+IY    
Sbjct: 247 AFLATANILKKAGINKK-GLHLFRHTLGFHLAQKGVRIEDIQEILRHSNINTTRIYVQRR 305

Query: 303 SKNGGDWMMEI 313
             +  + + +I
Sbjct: 306 EADKINGIKKI 316


>gi|317128840|ref|YP_004095122.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
 gi|315473788|gb|ADU30391.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
          Length = 324

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/303 (20%), Positives = 125/303 (41%), Gaps = 19/303 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++  L +  + +L   + E GLSK TL  Y+   +  L FL    E  +    +    + 
Sbjct: 26  INLSLTEMYERFLLFKKSE-GLSKQTLFDYDVHFKYLLDFL----ERDLMADEMTTEIFL 80

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           E R ++       +   ++   L  I++FL+Y  +     +      + +K       AL
Sbjct: 81  EYRNYM--LNDLGLKASTVNIRLRTIRAFLRYSYEEGWIDQPIHEKFKPVKAPQKEVDAL 138

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           + ++   L+  +     ++  +   R+  + + +     RISE L++  +N+      ++
Sbjct: 139 SPREIKLLLSQI-----NDDYYAGFRDKVLFFTMLDSMARISELLAIKRENVDLRNGVIK 193

Query: 190 IQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           ++    K    R VP+     K + EY +    + +   Q  LF    G+ L+    ++ 
Sbjct: 194 LEADGTKTKVDRFVPISTRTSKLLQEYIN----ETSDFEQEILFLTYDGQVLSANTVRKS 249

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +    +  G+    + H  RHS A   + NGGD  S++SILGH  L  T  Y  + + + 
Sbjct: 250 LMDYGKAAGINKQVSPHIWRHSGAILYIMNGGDPFSLKSILGHTTLHMTNHYVQMANTDV 309

Query: 307 GDW 309
              
Sbjct: 310 KKR 312


>gi|302867639|ref|YP_003836276.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
 gi|302570498|gb|ADL46700.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
          Length = 329

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 117/297 (39%), Gaps = 18/297 (6%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P  +        + WL+N    R LS+ T  +Y  D   +L + A    + +    +   
Sbjct: 12  PAALPAGPADVTEAWLRN----RRLSEHTRDAYRRDVTGWLTWCAEQAVDPLRATFLDVN 67

Query: 67  SY-TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-- 123
           +Y  E+ +    R  + +   ++ R LS + S+  +L K      + +      +     
Sbjct: 68  TYGRELESTPRGRAGRPLTPATVARRLSALSSWYDFLVKLGAVPANPVSAADRPRVDRDH 127

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           S    L   +   L+         +T    ARN A + LL   GLR+ E ++L   ++  
Sbjct: 128 SATVGLTPDEVDALI----AAAEADTGPAAARNRAAVALLADLGLRVGELVALDVSDLGT 183

Query: 184 DQST--LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIRGKPL 238
           ++    +R  GKG K+R   L P    A+  Y  +      +    +  PL     G  L
Sbjct: 184 ERGHRSIRFVGKGGKVRRRALTPGTAYAVDAYLAVRAAAQGVTVPELTGPLLVTATGGRL 243

Query: 239 NPGVFQRYIRQLRRYLGLPL--STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           +     R +R+L +  G+      + H+LRH+FAT   S G  L  +Q  +GH    
Sbjct: 244 DRHAVFRLVRRLAQRAGIAAWAKLSPHSLRHAFATTARSEGVPLEDVQDAMGHADPR 300


>gi|210610698|ref|ZP_03288579.1| hypothetical protein CLONEX_00769 [Clostridium nexile DSM 1787]
 gi|210152331|gb|EEA83337.1| hypothetical protein CLONEX_00769 [Clostridium nexile DSM 1787]
          Length = 328

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 61/304 (20%), Positives = 124/304 (40%), Gaps = 29/304 (9%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            E     + +L    IE G S+ TL  Y     Q +  +          +T+  +   ++
Sbjct: 48  PETQDYLEIFLSAKRIE-GCSEKTLTYYRNTIHQMMESIG---------KTVCTIETEDL 97

Query: 72  RAFISKRRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           R ++S+ + +K   + ++        SF  +L+      +S +  +  +K ++ +     
Sbjct: 98  RTYLSRYQAEKESSKVTIDNIRRIFSSFFAWLEDEDYIIKSPVRRIHRIKSASVIKETYT 157

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           ++Q  T+ DN            + R+ A++ +L   G+R+ E + L   +I  ++    +
Sbjct: 158 DEQLETMRDNCD----------NLRDLALIDILASTGMRVGELVLLNRDDISFEERECVV 207

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIR 248
            GKGDK R+V      +  +  Y      D   + +  LF  ++   K +  G  +  +R
Sbjct: 208 FGKGDKERMVYFDARTKLHLQNYL-----DSRTDNENALFVSLKAPYKRMKIGGIEVRLR 262

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           ++ + L +      H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V   N   
Sbjct: 263 EMGKRLNIEK-VHPHKFRRTLATVAIDKGMPIEQLQKLLGHQRIDTTLQYAMVKQSNVKI 321

Query: 309 WMME 312
              +
Sbjct: 322 AHRK 325


>gi|32472856|ref|NP_865850.1| integrase [Rhodopirellula baltica SH 1]
 gi|32444093|emb|CAD73535.1| integrase [Rhodopirellula baltica SH 1]
          Length = 436

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 80/320 (25%), Positives = 129/320 (40%), Gaps = 40/320 (12%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
           G++ PE +   L ++      +L    G +K T   Y    RQ   F            +
Sbjct: 136 GSHFPESLRLRLSEDL-----HLT---GKAKRTHDGYIRAVRQLSDFAGC---------S 178

Query: 63  IRQLSYTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
             Q++   +R F    +  +     SL+ + SGIK F  +  KR       I+ M  L+ 
Sbjct: 179 PDQVNEQHVRQFFLHLKNDRNFAYGSLRVAFSGIKFFFTHTCKRDW----EIIKMLKLQN 234

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
             +LP  L  +Q   L+                R     + +Y  GLR++EAL L   +I
Sbjct: 235 ITTLPEVLTIEQVHELI----------GSATTQRMFVYFWTVYSLGLRLNEALHLQVSDI 284

Query: 182 MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPF-------DLNLNIQLPLFRGI 233
             ++  + + +GKG K R VPL  +  + +  Y+            D   +         
Sbjct: 285 DAERGWVHVHRGKGAKDRYVPLPTTTVRLLRNYWASHRHPSFLFPADGRKHDLAKDGVSE 344

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
              P++    Q  ++Q+ + L      + HTLRHS+ATHLL  G  L+ IQ  LGH  L 
Sbjct: 345 ATTPMSETAVQGAMKQITKNLRFGKKVSIHTLRHSYATHLLEAGVGLKVIQKYLGHSSLQ 404

Query: 294 TTQIYTNVNSKNGGDWMMEI 313
           TT +Y ++      +   EI
Sbjct: 405 TTMVYLHLTDTAEANAREEI 424


>gi|78776978|ref|YP_393293.1| integron integrase [Sulfurimonas denitrificans DSM 1251]
 gi|78497518|gb|ABB44058.1| Integron integrase [Sulfurimonas denitrificans DSM 1251]
          Length = 320

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 68/320 (21%), Positives = 124/320 (38%), Gaps = 59/320 (18%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           +  S  T ++Y    + ++ +           Q    L   EI  F++    T+K+   +
Sbjct: 16  KHYSISTEKTYVFWIKHYIFYHQK--------QHPVNLGKKEIEDFLTFLAVTKKVSPTT 67

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++ S +    + +   +I+T + +  +R  ++   +P  L + +   ++ N+      
Sbjct: 68  QNQAFSALLFLYREVLDIEISTWN-VQALRA-QQRKHIPVVLTKDEVQNIILNM------ 119

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
                +     ++ L+YGCGLR+SE  ++  ++I      + +  GK  K R +PL   +
Sbjct: 120 -----NGIYQLMVKLMYGCGLRMSEVQNIRIKDIDFGFDKIYVWDGKSLKDRTLPLPMKI 174

Query: 207 RKAIL------------------------------------EYYDLCPFDLNLNIQLPLF 230
           +  +                                     E      F +N     P  
Sbjct: 175 KDELKIQVEKVRELHQKDLKDGYGSVYIPYAFERKFPKAKFETKWQYIFPMNTIATDPRS 234

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
              R   +      R I+Q      +    T+H  RHS+ATHLL  G DLRSIQ +LGH 
Sbjct: 235 GERRRHHILDATLSRNIKQAVTKSNIDKRVTSHIFRHSYATHLLQAGIDLRSIQELLGHK 294

Query: 291 RLSTTQIYTNVNSKNGGDWM 310
            + TT IYT+V S+     +
Sbjct: 295 SVETTMIYTHVVSEMNKAKL 314


>gi|240047536|ref|YP_002960924.1| Tyrosine recombinase xerC [Mycoplasma conjunctivae HRC/581]
 gi|239985108|emb|CAT05101.1| Tyrosine recombinase xerC [Mycoplasma conjunctivae]
          Length = 326

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 52/287 (18%), Positives = 121/287 (42%), Gaps = 30/287 (10%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR--- 86
           G S  T++ Y       +  +          + I ++   ++R ++S  + +    +   
Sbjct: 63  GCSDKTIKYYISTIDSMVKSIN---------KQINEIETNDLRNYLSNYQYKNNSSKVTI 113

Query: 87  -SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            +++R LS   SF  +L+      +S +  ++ +K   ++    ++++   + DNV    
Sbjct: 114 DNIRRILS---SFFSWLEDENYIVKSPVRRIKKVKAPITVKETYSDEELEIMRDNV---- 166

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
                  + R+ A++ +L   G+R+ E + L  +++  ++    + GKG+K RIV     
Sbjct: 167 ------NNYRDLALIDILASTGMRVGELVKLNIEDVDFNERECIVVGKGNKQRIVYFDAR 220

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            +  + +Y D     ++ N  L +   +    ++    +  +R++ + L +      H  
Sbjct: 221 TKIHLKKYLDSR---VDKNKSLFVSLKLPYGRISINGIESRLRKIGKDLNI-KKVHPHKF 276

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           R + AT  +  G  +  +Q +LGH ++ TT  Y  V   N      +
Sbjct: 277 RRTLATIAIDKGMPIEQVQRLLGHEKVDTTLKYAMVKQSNVKKAHQK 323


>gi|300872285|gb|ADK38970.1| IntI4 [Vibrio sp. V87(2010)]
          Length = 290

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 73/307 (23%), Positives = 128/307 (41%), Gaps = 61/307 (19%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGI 95
           ++Y     +++ F        +  +        E+  F++    Q  +  ++   +L+ +
Sbjct: 1   RAYLHWITRYIHFHNKKHPSLMGDK--------EVEEFLTYLAVQGKVATKTQSLALNSL 52

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
               K + K  ++ E   +  +  +    LP  L   +   L++            +D +
Sbjct: 53  SFLYKEILKTPLSLE---IRFQRSQLERKLPVVLTRDEIRRLLEI-----------VDPK 98

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR------- 207
           +   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V L   +        
Sbjct: 99  HQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQI 158

Query: 208 ----------------------KAILEYYDLCPFDLNLNIQLPLFR--------GIRGKP 237
                                  A+ E Y   P++   +   P F+         +R   
Sbjct: 159 ALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHH 218

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +N  V Q+ +R+  +  G+  + T HTLRHSFAT+LL  G D+R++  +LGH  + TTQI
Sbjct: 219 MNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATNLLEVGADIRTVHELLGHTDVKTTQI 278

Query: 298 YTNVNSK 304
           YT+V  +
Sbjct: 279 YTHVLDR 285


>gi|262202504|ref|YP_003273712.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262202581|ref|YP_003273789.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262204533|ref|YP_003275741.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262085851|gb|ACY21819.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262085928|gb|ACY21896.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262087880|gb|ACY23848.1| integrase family protein [Gordonia bronchialis DSM 43247]
          Length = 324

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 78/338 (23%), Positives = 139/338 (41%), Gaps = 56/338 (16%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             ++L+ L   R     T+ +   D + F   +    E+         +S  ++  F+ +
Sbjct: 9   VDDYLE-LVATRAR-PNTVLATAYDLKVFFEVVDREPEK---------VSVDDVLDFLKQ 57

Query: 78  RR--------------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI---------- 113
           +R               Q +  R++KR LS I    +YL+ R + T + +          
Sbjct: 58  QRQPRRGATVVRIEDGEQGLSARTIKRRLSSIAGLYEYLRIRGVVTANPVPRGLATRSPG 117

Query: 114 ---LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
                +  ++   +LPR L+  QA   V ++             R+ A++  +   GLR 
Sbjct: 118 RAVRGVPLIRAPRTLPRVLDPAQADAFVASLRTD----------RDRAMVAAMLLGGLRR 167

Query: 171 SEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLP 228
            E L L   ++   +  + I +GKG   RIVP+      A+ +Y +   P D   +    
Sbjct: 168 CEVLGLGLNDLNPGERRVFIAEGKGGHQRIVPISTRFFTAVTDYLNRERPQDTATDRLFV 227

Query: 229 LFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           + +G  RG+PL+       I   RR  G+    T H LRH+  T L   G  L +IQS  
Sbjct: 228 VLKGPRRGQPLSAAGLDEIIAGARRRAGIEQ-LTCHQLRHTCFTRLREAGMALEAIQSQA 286

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           GH  + +T+IY ++ +    DW+   Y +   +I  ++
Sbjct: 287 GHRSIESTRIYLHLAN----DWLASEYRRAMEAIDAQN 320


>gi|298528846|ref|ZP_07016249.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298529859|ref|ZP_07017261.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298529886|ref|ZP_07017288.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509233|gb|EFI33137.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509260|gb|EFI33164.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510282|gb|EFI34185.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 338

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 116/299 (38%), Gaps = 19/299 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + Q L   +G+S  T+ +Y      FL F +      I    I  LS   I  F+    +
Sbjct: 11  FDQYLPRTKGVSSNTILAYRHTFSLFLPFASKTLGRDINSLEIEHLSTQLILDFLDHLES 70

Query: 81  -QKIGDRSLKRSLSGIKSFLK---YLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            +    R+    L+  KS  +   +L          I+++   +    L   L  ++ L 
Sbjct: 71  GRNNSARTRGHRLAVFKSLARMIRFLYPEHKLLADRIISIPQKRFPKKLAAFLTHEEVLL 130

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           ++D++ L  S        R+  I++LLY  G R  E+ SL        + TL I GKG++
Sbjct: 131 VLDSINLKKSG-----AFRDYTIIHLLYNSGARAEESASLRLDYFDPHKKTLAILGKGNR 185

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR----- 251
            R + L P   + +  Y            Q  LF   R +        R  R+       
Sbjct: 186 YRQIELWPKTVQLMSMYIQKYRPRPKPLHQNTLFLNQRRQGFTRNGIYRLCRKYLSLVFE 245

Query: 252 --RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
             R+ GL      H  RHS A ++L  G  L  I++ LGH  L +T +Y  ++     +
Sbjct: 246 ENRFQGLNP---VHCFRHSCAINMLGTGFSLTDIKNHLGHENLQSTMVYLKLSLNRKRE 301


>gi|41057040|ref|NP_957522.1| putative integrase [Streptococcus thermophilus]
 gi|34980337|gb|AAQ84064.1| putative integrase [Streptococcus thermophilus]
          Length = 308

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 119/297 (40%), Gaps = 31/297 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              ++  L+     S  T+++Y+   RQF  +L  +         IRQ    ++ AF   
Sbjct: 25  FDRFINYLDA----SPKTVETYKKALRQFFNYLGLHG--------IRQPQREDVLAFRDD 72

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALT 136
            +   +   +++  ++  + F K+ ++  +   +   +++  K   +  +  L  +QA  
Sbjct: 73  LKASGLKPTTVQNYITATRIFFKWTEQEGLYP-NIAEHVKGAKLDKNHKKDYLTSRQAKE 131

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQGKG 194
           ++ N+   T         RN AIL L+   GLR  E       +   + + + L +QGKG
Sbjct: 132 VLANIKTDTEE-----GLRNYAILSLMVTGGLRTIEVSRADVGDLRTVGENTVLFVQGKG 186

Query: 195 DKIRIVPLLPSV--RKAILEYYDLCPFDLNLNIQLPLFR----GIRGKPLNPGVFQRYIR 248
            + +   +  S    KAI  Y            + PLF       RGK +        ++
Sbjct: 187 REEKTEYIKISAPVEKAIRTYLKARDL---TTEEQPLFTSTSNNSRGKRITTRTVSAVVK 243

Query: 249 QLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              +  G      TAH+LRH+  T  L  G ++  +Q    H  L+TT IY +   +
Sbjct: 244 NALKNAGYDSARLTAHSLRHTAITLALLAGREITEVQQFARHANLNTTMIYNHALDQ 300


>gi|160894142|ref|ZP_02074920.1| hypothetical protein CLOL250_01696 [Clostridium sp. L2-50]
 gi|160894145|ref|ZP_02074923.1| hypothetical protein CLOL250_01699 [Clostridium sp. L2-50]
 gi|156864175|gb|EDO57606.1| hypothetical protein CLOL250_01696 [Clostridium sp. L2-50]
 gi|156864178|gb|EDO57609.1| hypothetical protein CLOL250_01699 [Clostridium sp. L2-50]
          Length = 351

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 58/296 (19%), Positives = 120/296 (40%), Gaps = 25/296 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L    IE G S+ +L+ Y+      L  L          + ++ +   +IR ++++
Sbjct: 77  VELFLSAKRIE-GCSEKSLKYYKATIEAMLDELQ---------KDVKHIVTDDIRGYLTE 126

Query: 78  RRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            + +K   + ++      + SF  +L+      +S +  +  +K   ++    +++    
Sbjct: 127 YQEKKKSSKVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHRVKTGTNIKETYSDEALEL 186

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           + DN            + R+ AI+ +L   G+R+ E + L   +I  ++    + GKG K
Sbjct: 187 MRDNC----------TELRDLAIIDMLASTGMRVGEMVLLNRDDIDFNERECVVFGKGSK 236

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+V      +  +  Y +      + N  L +      K L  G  +  +R+  + LGL
Sbjct: 237 ERVVYFDARTKIHLQNYLESRR---DNNPALFVSLKSPHKRLKIGGVEVRLREFGKQLGL 293

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                 H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V   N      +
Sbjct: 294 NK-VHPHKFRRTLATMAIDKGMPIEQLQQLLGHRKIDTTLQYAMVKQSNVKIAHRK 348


>gi|255527476|ref|ZP_05394346.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296187574|ref|ZP_06855969.1| phage integrase [Clostridium carboxidivorans P7]
 gi|308390320|ref|YP_003933773.1| putative integrase/recombinase [Clostridium carboxidivorans P7]
 gi|255508819|gb|EET85189.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296048096|gb|EFG87535.1| phage integrase [Clostridium carboxidivorans P7]
 gi|308066827|gb|ADO12131.1| putative integrase/recombinase [Clostridium carboxidivorans P7]
          Length = 295

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 120/291 (41%), Gaps = 34/291 (11%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           +I+ G    T++ Y  D  QF+ +L      +I    +  +   EI  F  K   + +  
Sbjct: 36  KIDEGKRTETIKGYFNDLIQFIRYL------EIKGVDLFNIDSKEIELFKGKMLRRGLKP 89

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS--NSLPRALNEKQALTLVDNVLL 143
           +S+ R L+ I  FLK +  +        +  R +K+   N L      ++   L+     
Sbjct: 90  KSINRKLTSINQFLKSIDSQ--------VKFRKIKEQSQNFLNDVFTREEIERLIKCC-- 139

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
                    + R+ AI+  L+  G+R+SE L L  +++   + ++ I+GKG K R + + 
Sbjct: 140 --------SNIRDKAIISTLWKTGIRVSELLQLKVRDV--GKESIDIEGKGGKHRDILIS 189

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-STTA 262
             + K + EY  +            LF G RG  L  G   + I +  +   +       
Sbjct: 190 NELNKLLKEYLKVRISVPGNE----LFTGKRG-ALKRGAINKIILKYAKLAKIRKEKAHP 244

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           H+ RH+F   L  NG  +  I  + GH  L TT+IYT    K     +  I
Sbjct: 245 HSFRHAFCKALADNGVSIDIIADLAGHKSLDTTRIYTRHTKKELIKILDNI 295


>gi|298531267|ref|ZP_07018667.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508877|gb|EFI32783.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 338

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 115/299 (38%), Gaps = 19/299 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR- 79
           + Q L   +G+S  T+ +Y      FL F +      I    I  LS   I  F+     
Sbjct: 11  FDQYLPRTKGVSSNTILAYRHTFSLFLPFASKTLGRDINSLEIEHLSTQLILDFLDHLES 70

Query: 80  TQKIGDRSLKRSLSGIKSFLK---YLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            +    R+    L+  KS  +   +L          I+++   +    L   L  ++ L 
Sbjct: 71  DRNNSARTRGHRLAVFKSLARMIRFLYPEHKLLADRIISIPQKRFPKKLAAFLTHEEVLL 130

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           ++D++ L  S        R+  I++LLY  G R  E+ SL        + TL I GKG++
Sbjct: 131 VLDSINLKKSG-----AFRDYTIIHLLYNSGARAEESASLRLDYFDPHKKTLAILGKGNR 185

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR----- 251
            R + L P   + +  Y            Q  LF   R +        R  R+       
Sbjct: 186 YRQIELWPKTVQLMSMYIQKYRPRPKPLHQNTLFLNQRRQGFTRNGIYRLCRKYLSLVFE 245

Query: 252 --RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
             R+ GL      H  RHS A ++L  G  L  I++ LGH  L +T +Y  ++     +
Sbjct: 246 ENRFQGLNP---VHCFRHSCAINMLGTGFSLTDIKNHLGHENLQSTMVYLKLSLNRKRE 301


>gi|138895723|ref|YP_001126176.1| integrase-recombinase protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|196250982|ref|ZP_03149665.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|134267236|gb|ABO67431.1| Integrase-recombinase protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|196209546|gb|EDY04322.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 243

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 107/243 (44%), Gaps = 8/243 (3%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEK 132
           ++++ R  K    SL      +  F  +L    +   ++ +  ++  K+  +L + L ++
Sbjct: 2   YLAEER--KNNPVSLNTKRKLMSVFFNFLISEGLLNGDNPVKQLKKAKEEKTL-KTLTDE 58

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +  +L+  +         +   R+  I   L G G+R+ E  +L  ++I       +I G
Sbjct: 59  EVNSLIAWLKRQKRRNNSFYTVRDYTIFVTLLGTGMRLGELCNLKWEDIDFSSQRAKIFG 118

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K  K+  +PL   +   +  + +     L    +  +F  I+G+ L     ++  ++L  
Sbjct: 119 KARKVETIPLNSKLLSELALWKEYSSDSLGKLPE-YVFTNIKGERLGENGTKQVFKRLTN 177

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    + H LRH+FA   + +GGD+  +  +L H  + TT+IY +  S    D M E
Sbjct: 178 ETGI--KVSPHMLRHTFARKFIESGGDVSVLSKLLRHSSIKTTEIYLHYFSNTLKD-MNE 234

Query: 313 IYD 315
            ++
Sbjct: 235 AHN 237


>gi|294793172|ref|ZP_06758318.1| integrase/recombinase, phage integrase family [Veillonella sp.
           6_1_27]
 gi|294456117|gb|EFG24481.1| integrase/recombinase, phage integrase family [Veillonella sp.
           6_1_27]
          Length = 329

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 59/301 (19%), Positives = 120/301 (39%), Gaps = 35/301 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L    IE G S+ +L  Y          +          + +R+    ++R ++++
Sbjct: 55  LERFLAAKRIE-GCSEKSLAYYRTTIDAMTAKVE---------KNVRETETDDLRTYLTE 104

Query: 78  RRTQKIGDR----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            + +K   +    +++R LS   SF  +L+      +S    +  +K + ++     ++ 
Sbjct: 105 YQQEKNSSKVTVDNIRRILS---SFFSWLEDEDYILKSPARRIHKVKAALTIKETYTDEA 161

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              + D+            + R+ A++ +L   G+R+ E + L   +I  ++    + GK
Sbjct: 162 LEKMRDSCE----------EPRDLALIDMLASTGMRVGELVLLNRDDINFEERECVVFGK 211

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR 251
           G K R+V      +  +  Y      D        LF  +R   + L  G  +R +R+L 
Sbjct: 212 GSKERMVYFDARTKIHLQNYLQERTDD-----NPALFVSLRAPHERLQSGGVERRLRELG 266

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           + L +      H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V   N      
Sbjct: 267 KKLDIEK-VHPHKFRRTLATMAIDKGMPIEQLQQLLGHKRIDTTLQYAMVKQSNVKLAHR 325

Query: 312 E 312
           +
Sbjct: 326 K 326


>gi|229015108|ref|ZP_04172164.1| integrase/recombinase [Bacillus mycoides DSM 2048]
 gi|228746161|gb|EEL96108.1| integrase/recombinase [Bacillus mycoides DSM 2048]
          Length = 308

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 54/297 (18%), Positives = 126/297 (42%), Gaps = 20/297 (6%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + + ++  + R L   T+  Y+           F+  +KI  + + +    ++   I
Sbjct: 23  EAYEKFFKDCYL-RNLRPATIGYYKN---------EFHGAKKIINKQLVEWEQKDVEDLI 72

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            K + Q +   ++   L  ++SF  +L K K+  ++ + N++ L+        L+ ++  
Sbjct: 73  LKSK-QLMKVTTINTRLRALRSFYNFLDKHKLIDKNPMKNIKLLRDRQKTIETLDNQEIE 131

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+  +      +  ++  R+  IL +    G+R+SE + +  +++  ++  +R   K  
Sbjct: 132 KLIKTIR----KQKTFVGFRDEVILLVFLDTGVRLSELIGINVEDVRHNKLIIR-STKNL 186

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
             R V L  + ++ +  Y  +            LF     K L+P   Q  + +  +   
Sbjct: 187 FERTVYLSDTTQERLESYIKVRGEVATNK----LFISQNNKELHPHSIQTRLTKYGKEAK 242

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           +    + HT RH+ A  ++ +G D  S+  +LGH  ++ T+ Y N+  ++      E
Sbjct: 243 ISKRVSPHTFRHTMAKRMIVSGLDAFSLMHLLGHTDITVTKRYVNLWGQDLEQKHKE 299


>gi|229546531|ref|ZP_04435256.1| integrase/recombinase [Enterococcus faecalis TX1322]
 gi|307277324|ref|ZP_07558423.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|307296545|ref|ZP_07576367.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|229308343|gb|EEN74330.1| integrase/recombinase [Enterococcus faecalis TX1322]
 gi|306496018|gb|EFM65604.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|306505991|gb|EFM75162.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|315157760|gb|EFU01777.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0312]
          Length = 302

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 125/258 (48%), Gaps = 12/258 (4%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RG SK+T+++Y+   R    F      E        Q+   +I+++I   + +++   ++
Sbjct: 37  RGFSKITIKNYKSKLRNTANFFKSINVEP------SQIEKKQIKSWIIDMQEKEMQASTI 90

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
             S+S +K    Y+   K    +  +++  LK+   +   LN+ +   ++    +   H 
Sbjct: 91  NVSVSRLKKLFDYMLIEKYIDYNPFVDIERLKEQRKVIYPLNDYEIKQML---TVAKKHP 147

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
            K I  RN  IL L+  CGLRISE   +  ++IM++Q  +R + K +K R V + P ++K
Sbjct: 148 YKHIAQRNVVILMLMIECGLRISEVCEIRDEDIMNNQIIIR-KSKNNKDRAVAVSPILKK 206

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST--TAHTLR 266
            I++Y  +      L    P      GK LN     + ++++++ + +      + HTLR
Sbjct: 207 EIIKYQRIKKRKFGLLEGNPFIVSNLGKKLNEKSIWQIMQEIKKQIDIRDCVRFSGHTLR 266

Query: 267 HSFATHLLSNGGDLRSIQ 284
           H++A+  L NG D+ ++ 
Sbjct: 267 HTYASMQLRNGLDIYTLS 284


>gi|228904845|ref|ZP_04068899.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis IBL 4222]
 gi|228854859|gb|EEM99463.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis IBL 4222]
          Length = 365

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 73/334 (21%), Positives = 140/334 (41%), Gaps = 49/334 (14%)

Query: 30  GLSKLTLQSYECDTRQFL-IFLAFYTEEKITIQTIR--------QLSYTEIRAFISKRRT 80
            L+  T+ SY  D + F   F   +  EK  I+ I         ++  +  R+ +  R  
Sbjct: 33  QLTPTTVLSYTIDIQDFFEWFWHTFVPEKPGIKEISLEDLERLIEIDISHYRSHLKYRED 92

Query: 81  Q----------KIGDRSLKRSLSGIKSFLKY-------LKKRKITTESNILN-------M 116
                      K  D ++ R +S ++S  +Y          R   +++ + N       +
Sbjct: 93  SHNIGNRYYKTKNKDTTISRKISALRSLFEYLTKNTNRETGRPYLSKNVLENTKVFSTKV 152

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHET----------KWIDARNSAILYLLYGC 166
               K+  L   +   + LT   + +L    +           K    R++AI+ LL   
Sbjct: 153 SVRAKAQKLKNNIIRLEELTEFQDFILEGYGKEQISNMEKAYWKINRHRDAAIISLLLTS 212

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC--PFDLNLN 224
           G+R+ E  SL  ++++ D   L ++ K  K  +V       + I++Y ++    +  +  
Sbjct: 213 GIRVGELSSLRLKDVIFDSRKLVVERKRSKEDVVFFSKQTLEYIVQYLEVRESHYKADDK 272

Query: 225 IQLPLFRGI---RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
              PLF      +  P++    Q+ I +  +  G P   TAH LRHSF T++     ++R
Sbjct: 273 PTSPLFVTKYAGKINPISKNTVQKMIMKYAKIYGKP-ELTAHILRHSFGTNVFKKTKNIR 331

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            +Q  LGH  ++TTQIYT++   +  + + E+++
Sbjct: 332 GVQEALGHSSINTTQIYTHMFEDDERELIDEVFE 365


>gi|209418091|ref|YP_002274120.1| site-specific recombinase [Mycobacterium liflandii 128FXT]
 gi|169409223|gb|ACA57629.1| site-specific recombinase [Mycobacterium liflandii 128FXT]
          Length = 345

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 61/301 (20%), Positives = 110/301 (36%), Gaps = 24/301 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L +    R  S  T ++Y  D     + LA    + I+      L+   +RA  +   
Sbjct: 21  EFLAD-RAIRKPSPHTTKAYRQDFEAVALLLAG-GADAISTLPTNALNKESLRAAFA-VY 77

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +     S++R  S   +   +L    +   + +  +   K   +LP++        L+ 
Sbjct: 78  AETHSAASIRRCWSTWNTLCTFLYTANLLDANPMPAIGRPKVPKALPKSYTADAVNNLIA 137

Query: 140 NVLLHT-SHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQGKGDK 196
            +     S        R+ AI++     GLR  E +           D   L + GKG+K
Sbjct: 138 AIDTDDGSARRSNWPERDRAIIFTALLTGLRADELIRANIGAIRCNADGGVLHVSGKGNK 197

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL--------------NLNIQLPLFRGIRGKPLNPGV 242
            R +P    + + +  Y       +                +   PLF G  G+ +  G 
Sbjct: 198 DRRIPCDTKLIEMLQRYLQTREDRIPHLRKRSASPDVMGRFSPTAPLFVGSDGERITRGT 257

Query: 243 FQRYIRQLRRYLGLPLSTTA----HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            Q  I +  +  G+     A    H LRH+FAT L +    + ++  +LGH  + T+Q Y
Sbjct: 258 LQYRILRGFKKAGINNDRAAGALVHGLRHTFATELANANVSVYALMKLLGHESMVTSQRY 317

Query: 299 T 299
            
Sbjct: 318 V 318


>gi|91790655|ref|YP_551607.1| phage integrase [Polaromonas sp. JS666]
 gi|91699880|gb|ABE46709.1| phage integrase [Polaromonas sp. JS666]
          Length = 291

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 112/289 (38%), Gaps = 30/289 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ  L  + + RGL++ T + Y     +               ++   LS  E+ A++  
Sbjct: 5   RQRMLDAMTV-RGLAERTQECYAEAVSRMARHYH---------RSPDLLSPQEVEAYLLH 54

Query: 78  R-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             + +K+   S+  + S  +   + +  RK       L     K     P  L  ++   
Sbjct: 55  LVKDRKLSYSSVNHAASASRFLFETVLGRK---SDEHLRPPMAKVPQKQPHLLAREEIAR 111

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQ-GK 193
           L                      L  LY  GLR+SE   L   +I    D+  +R+  GK
Sbjct: 112 LFACC----------AHPAYRMALQTLYATGLRVSEVGRLRVSDIDSAADRMCVRVNAGK 161

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRR 252
           G   R   L PS+   +  Y     +    N    LF    G+  +     QR  +  R 
Sbjct: 162 GGADRYSILSPSLLALLRLYCQ--TYAPQRNPGKWLFANGTGERGVGIESLQRAYQAARH 219

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             G+  S   HTLRH FATHLL +G DL +I  +LGH  +STT  Y ++
Sbjct: 220 CAGITKSGGTHTLRHCFATHLLESGVDLYTISRLLGHRHISTTSRYLHL 268


>gi|75758220|ref|ZP_00738345.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74494274|gb|EAO57365.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 368

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 73/334 (21%), Positives = 140/334 (41%), Gaps = 49/334 (14%)

Query: 30  GLSKLTLQSYECDTRQFL-IFLAFYTEEKITIQTIR--------QLSYTEIRAFISKRRT 80
            L+  T+ SY  D + F   F   +  EK  I+ I         ++  +  R+ +  R  
Sbjct: 36  QLTPTTVLSYTIDIQDFFEWFWHTFVPEKPGIKEISLEDLERLIEIDISHYRSHLKYRED 95

Query: 81  Q----------KIGDRSLKRSLSGIKSFLKY-------LKKRKITTESNILN-------M 116
                      K  D ++ R +S ++S  +Y          R   +++ + N       +
Sbjct: 96  SHNIGNRYYKTKNKDTTISRKISALRSLFEYLTKNTNRETGRPYLSKNVLENTKVFSTKV 155

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHET----------KWIDARNSAILYLLYGC 166
               K+  L   +   + LT   + +L    +           K    R++AI+ LL   
Sbjct: 156 SVRAKAQKLKNNIIRLEELTEFQDFILEGYGKEQISNMEKAYWKINRHRDAAIISLLLTS 215

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC--PFDLNLN 224
           G+R+ E  SL  ++++ D   L ++ K  K  +V       + I++Y ++    +  +  
Sbjct: 216 GIRVGELSSLRLKDVIFDSRKLVVERKRSKEDVVFFSKQTLEYIVQYLEVRESHYKADDK 275

Query: 225 IQLPLFRGI---RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
              PLF      +  P++    Q+ I +  +  G P   TAH LRHSF T++     ++R
Sbjct: 276 PTSPLFVTKYAGKINPISKNTVQKMIMKYAKIYGKP-ELTAHILRHSFGTNVFKKTKNIR 334

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            +Q  LGH  ++TTQIYT++   +  + + E+++
Sbjct: 335 GVQEALGHSSINTTQIYTHMFEDDERELIDEVFE 368


>gi|213021541|ref|ZP_03335988.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 236

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 78/184 (42%), Gaps = 8/184 (4%)

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           S ++SF  +L  +     +    +   K    LP+ ++      L+D  L         +
Sbjct: 1   SALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDL------NDPL 54

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
             R+ A+L ++YG GLR+SE + L  +++  D   + + GKG K R +P+  +    I  
Sbjct: 55  AVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEH 114

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           + DL    L  + +  LF    GK ++    Q+   +     GL      H LRHSF   
Sbjct: 115 WLDLRG--LFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFGPI 172

Query: 273 LLSN 276
             + 
Sbjct: 173 CWNR 176


>gi|301057343|ref|ZP_07198461.1| integron integrase [delta proteobacterium NaphS2]
 gi|300448573|gb|EFK12220.1| integron integrase [delta proteobacterium NaphS2]
          Length = 326

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 69/313 (22%), Positives = 127/313 (40%), Gaps = 58/313 (18%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSL 88
             S  T +SY    ++F+ F    + + +     +      I  F++       +   + 
Sbjct: 20  HYSIHTERSYCDWIKRFVHFHGMKSRDDLKEGEPK------IEQFLTHLAVVGNVSPSTQ 73

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            ++++ +    K + ++ +    N +  R   K  ++P  L + + ++++  +    +  
Sbjct: 74  NQAMNALVFLYKKVLEQPLDGRINAIRAR---KRQNIPVVLTKGEVVSVISLMKGTPN-- 128

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVR 207
                     ++ LLYG GLR  EAL L   +I  D   + ++ GKG+K R+ P   S+ 
Sbjct: 129 ---------LVVKLLYGSGLRAMEALRLRVHDIDYDLRQITVRSGKGNKDRVTPFPVSLA 179

Query: 208 KAIL------------------------------------EYYDLCPFDLNLNIQLPLFR 231
             +                                     E+     F      + P   
Sbjct: 180 PLLQSHLTRVKAIHEKDITDGYGAVYLPYALERKYPNAAKEWQWQYIFPSGSLSRDPESG 239

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
             R   ++P V  + I+   +  G+    ++HT RHSFATHLL  G D+R+IQ++LGH  
Sbjct: 240 RTRRHHIDPSVINKAIKAAAKRAGIHKRISSHTFRHSFATHLLERGTDIRTIQTLLGHSD 299

Query: 292 LSTTQIYTNVNSK 304
           LSTT IYT+V  +
Sbjct: 300 LSTTMIYTHVLGQ 312


>gi|16611927|gb|AAL27410.1|AF429957_1 XerC-like protein [uncultured bacterium]
          Length = 312

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 74/313 (23%), Positives = 126/313 (40%), Gaps = 32/313 (10%)

Query: 23  QNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           Q L  ER   G S  T+         +    A    E+   + + +L+   +  + + +R
Sbjct: 20  QYLR-EREAHGKSPATV--------HWQETAARLLMEETGARDLAELTPAILLDWFAAKR 70

Query: 80  TQK-------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +Q        +   +L +    ++ FLK+L +R  T     L + + +    + +     
Sbjct: 71  SQGGRGRRISVSISTLSQYERALRPFLKWLYQRGYTQTDLSLELPHYRPPKQVVQPFTPD 130

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +            +        R  A+  LL   G+R  EA+SL    I   + T+R++G
Sbjct: 131 ELRAFF------AAASEPPNARRKLALYRLLLDTGIRRGEAVSLQLDAIYWRERTMRVEG 184

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K    RIV       +AI EY +          +  LF    G PL  G   +   ++ R
Sbjct: 185 KTGG-RIVYFSERSLRAINEYLNNERRPRRPG-EATLFLDRHGDPLRAGEITQETIRIAR 242

Query: 253 YLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             G+       HT RH+FA   L  GGDLRS+Q +LGH +L TT IY +++S      + 
Sbjct: 243 RAGIMRDHVGPHTFRHTFAVEYLKAGGDLRSLQVLLGHSKLETTSIYLHMDSAT----LR 298

Query: 312 EIYDQTHPSITQK 324
           + + +  P    +
Sbjct: 299 DAHRRFSPLERLR 311


>gi|253577466|ref|ZP_04854781.1| integrase/recombinase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843166|gb|EES71199.1| integrase/recombinase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 339

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 61/292 (20%), Positives = 110/292 (37%), Gaps = 21/292 (7%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA-FISKR-RTQKIGDRSLK 89
           S  T++      + +   L     E      I  +S   +R  F+      +     ++ 
Sbjct: 55  SDDTIKFERNSLKCYQRILEEQDIEP----DIYDISIDLLRNKFVMFMVEKKGYKLNTIN 110

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             +  IK F  +L +     ++   +++  K       +  E+Q + L          + 
Sbjct: 111 NRIKAIKRFFTFLHEEGWIPDNPAAHLKTRKGHQPTIPSFTEEQVVALF-----KQPDQN 165

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRIVPLLPSVRK 208
            +   R+  +L L+   GLR+ E + L    +   D   L + GK  K R +P    VRK
Sbjct: 166 TFTGFRDFVMLSLILDTGLRVGEMIKLKTSQVDIKDSQLLGVIGKSKKPRDIPFCDDVRK 225

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRH 267
            ++ Y                F  + G+ L    FQ  + Q  +  G+  +  + HTLRH
Sbjct: 226 LLIRYIKARGDV----PSQYFFVTLHGRQLGVRTFQDTLHQYGKDAGITNVRVSPHTLRH 281

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           +FA   +   GD  S+Q ILGH      + Y N+        M   ++++ P
Sbjct: 282 TFAKMYILQDGDPYSLQDILGHTSQDMVKKYVNL----WRPEMKSKHEKSSP 329


>gi|298528030|ref|ZP_07015434.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511682|gb|EFI35584.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 338

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 116/299 (38%), Gaps = 19/299 (6%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + Q L   +G+S  T+ +Y      FL F +      I    I  LS   I  F+    +
Sbjct: 11  FDQYLPRTKGVSSNTILAYRHTFSLFLPFASKTLGRDINSLEIGHLSTQLILDFLDHLES 70

Query: 81  -QKIGDRSLKRSLSGIKSFLK---YLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            +    R+    L+  KS  +   +L          I+++   +    L   L  ++ L 
Sbjct: 71  GRNNSARTRGHRLAVFKSLARMIRFLYPEHKLLADRIISIPQKRFPKKLAAFLTHEEVLL 130

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           ++D++ L  S        R+  I++LLY  G R  E+ SL        + TL I GKG++
Sbjct: 131 VLDSINLKKSG-----AFRDYTIIHLLYNSGARAEESASLRLDYFDPHKKTLAILGKGNR 185

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR----- 251
            R + L P   + +  Y            Q  LF   R +        R  R+       
Sbjct: 186 YRQIELWPKTVQLMSMYIQKYRPRPKPLHQNTLFLNQRRQGFTRNGIYRLCRKYLSLVFE 245

Query: 252 --RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
             R+ GL      H  RHS A ++L  G  L  I++ LGH  L +T +Y  ++     +
Sbjct: 246 ENRFQGLNP---VHCFRHSCAINMLGTGFSLTDIKNHLGHENLQSTMVYLKLSLNRKRE 301


>gi|206895665|ref|YP_002247136.1| site-specific integrase/recombinase XerD protein [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738282|gb|ACI17360.1| site-specific integrase/recombinase XerD protein [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 289

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 79/295 (26%), Positives = 123/295 (41%), Gaps = 48/295 (16%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L++E + WL    + +  S  T++SY  D   FL F             + Q   T+I  
Sbjct: 22  LVEEYEQWL---VLRKQASPRTVRSYLKDVDDFLAF-------------VEQERSTDIEL 65

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F      + +   ++ R LS + SF  +L+++ I  E        +K    L +  N   
Sbjct: 66  FKQFLHDKGLSPSTVARKLSAVSSFSAFLRRQGIALE---FERPKVKIPQKLMQVPNWND 122

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              LVD V           D      L ++  CGLR SE L L   +I DD   + ++GK
Sbjct: 123 LDQLVDEV----------QDHEVRLALRMMLHCGLRASEVLELRWSDIGDD--YMLVRGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R++P+  ++R  I         +        +F   +GK  +     R  R     
Sbjct: 171 GGKQRMLPVSEAIRTDI---------ESIKRKGSYVFCDKKGKKRSRVWLWRKTRAFL-- 219

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                 T  H LRH+FAT L +N  D+R +Q  LGH  ++TTQ YT+V  +   +
Sbjct: 220 -----GTHPHILRHAFATEL-TNYADIRVVQESLGHSDITTTQRYTHVYREALKE 268


>gi|91792496|ref|YP_562147.1| phage integrase [Shewanella denitrificans OS217]
 gi|91714498|gb|ABE54424.1| phage integrase [Shewanella denitrificans OS217]
          Length = 296

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 125/290 (43%), Gaps = 35/290 (12%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q  L NL ++ G    T+ +Y    R+   +     ++         L+  +++ + + 
Sbjct: 13  YQQHLTNLTLQ-GKRPATIDAYSRAVRRIAAYFDCCPDK---------LTTADLKRYFAD 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    ++K   +G++ F +++  +        L++    + N LP  L   +   +
Sbjct: 63  LIASH-SWSTVKLDRNGLQFFYRHVLNQAW----QWLSIVKPPQVNHLPDILTPAEVSMV 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDK 196
           +          +     R       LY  GLR+ EA+SL   +I      + I+  KG K
Sbjct: 118 I----------SLTHKLRYQVCFLTLYSMGLRLGEAVSLQIGDIDSQLMQVHIRDAKGGK 167

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---LNPGVFQRYIRQLRRY 253
            R++PL     +A+  Y+              LF G  GKP   ++ G  Q+ ++++   
Sbjct: 168 DRLIPLPQRTLQALRYYWQTHRHPR------YLFPGKDGKPNSLMDRGGIQKAMKKVISE 221

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             +  S + H LRHS+ATHLL  G DLRS+Q +LGH  L+TT  YT + +
Sbjct: 222 CHIHKSISPHNLRHSYATHLLEQGLDLRSVQQLLGHNSLNTTARYTRLTT 271


>gi|256854437|ref|ZP_05559801.1| predicted protein [Enterococcus faecalis T8]
 gi|256709997|gb|EEU25041.1| predicted protein [Enterococcus faecalis T8]
 gi|315029064|gb|EFT40996.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4000]
          Length = 302

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 125/258 (48%), Gaps = 12/258 (4%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RG SK+T+++Y+   R    F      E        Q+   +I+++I   + +++   ++
Sbjct: 37  RGFSKITIKNYKSKLRNTANFFKSINVEP------SQIEKKQIKSWIIDMQEKEMQASTI 90

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
             S+S +K    Y+   K    +  +++  LK+   +   LN+ +   ++    +   H 
Sbjct: 91  NVSVSRLKKLFDYMLIEKYIDYNPFVDIERLKEQRKVIYPLNDYEIKQML---TVAKKHP 147

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
            K I  RN  IL L+  CGLRISE   +  ++IM++Q  +R + K +K R V + P ++K
Sbjct: 148 YKHIAQRNVVILMLMIECGLRISEVCEIRDEDIMNNQIIIR-KSKNNKDRAVAVSPILKK 206

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST--TAHTLR 266
            I++Y  +      L    P      GK LN     + ++++++ + +      + HTLR
Sbjct: 207 EIIKYQRIKKRKFGLLEGNPFIVSNLGKKLNEKSIWQIMQEIKKQIDIRDCVRFSGHTLR 266

Query: 267 HSFATHLLSNGGDLRSIQ 284
           H++A+  L NG D+ ++ 
Sbjct: 267 HTYASMQLRNGLDIYTLS 284


>gi|325288245|ref|YP_004264426.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324963646|gb|ADY54425.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 341

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 61/303 (20%), Positives = 118/303 (38%), Gaps = 13/303 (4%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-T 80
           L+ L  +R  S+ T++SY      F+++L       +       ++   I  F+      
Sbjct: 13  LEYLPNQRCFSENTVRSYRQALNLFILYLRTEQRMSVKQIRFDAMNREMILNFLDWLEND 72

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +  G  +  + L  ++SF  Y  +   T  +  + ++N+       + +       L   
Sbjct: 73  RHCGVNTRNQRLMVLRSFFNYAGELDCTQIALSVTVQNIPIKTPQSKVVEYLSETAL--E 130

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIR 198
           VLL   + TK    RN   + L+Y    R  E L +  +++          + GKG+K R
Sbjct: 131 VLLKQPYPTKRTGLRNLFFMVLMYDTAARCGELLDMKVRDLRVKVQHPIAYLHGKGNKTR 190

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG---KPLNPGVFQRYIRQLRRYL- 254
            VPLL    +    Y      +   + + PLF  +     +P++      ++++      
Sbjct: 191 TVPLLTGTVQHCERYLRTFHTNEPADSEKPLFYTVIHGIQQPMSADTVALFLKKYGDLAC 250

Query: 255 ----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                +P    AH LRH+ A HL   G  +  +   LGH    TT++Y   +++     +
Sbjct: 251 RACPEVPPHIHAHMLRHTRAMHLYHQGMPMMLLSEYLGHASEETTKVYAYADTEMKRAAI 310

Query: 311 MEI 313
            + 
Sbjct: 311 NKA 313


>gi|300872273|gb|ADK38964.1| IntI4 [Vibrio sp. V4(2010)]
          Length = 290

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 73/307 (23%), Positives = 126/307 (41%), Gaps = 61/307 (19%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGI 95
           ++Y     +++ F        +  +        E+  F++    Q  +  ++   +L+ +
Sbjct: 1   RAYLHWITRYIHFHNKKHPSLMGDK--------EVEEFLTYLAVQGKVATKTQSLALNSL 52

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
               K + K  ++ E   +  +  +    LP  L   +   L++            +D +
Sbjct: 53  SFLYKEILKTPLSLE---IRFQRSQLERKLPVVLTRDEIRRLLEI-----------VDPK 98

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR------- 207
           +   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V L   +        
Sbjct: 99  HQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQI 158

Query: 208 ----------------------KAILEYYDLCPFDLNLNIQLPLFR--------GIRGKP 237
                                  A+ E Y   P++   +   P F+         +R   
Sbjct: 159 ALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHH 218

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH  + TT  
Sbjct: 219 MNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTTN 278

Query: 298 YTNVNSK 304
           YT+V  +
Sbjct: 279 YTHVLDR 285


>gi|320161519|ref|YP_004174743.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
 gi|319995372|dbj|BAJ64143.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
          Length = 300

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 65/311 (20%), Positives = 123/311 (39%), Gaps = 33/311 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L+    +R LS+ TL  YE   R+F          +I    I  +    I  +++ 
Sbjct: 8   IDEFLEFKRAQR-LSRWTLLDYETVLRRF--------NREIGDFDIDHIERKTIAHYLAS 58

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +  + +K   + + S   +  +    T   I  ++  K            Q + +
Sbjct: 59  L---DLSKKRVKNIYTALSSLWTWAVEMGYCTVHIIRQIKPPKPEKRPILPFTRDQIMNM 115

Query: 138 VDNVLLHTSHETK---------WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           + +      +                R+ AI+ LL   G+R SE   +  ++I      +
Sbjct: 116 LASTDASKEYTRPGKRACRNRLKTGVRDRAIILLLLDTGIRASELCGIKVKDI--KPHGI 173

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            I GKG K R+VP+  + R A+ +Y          +I+  +F+  +G  L+    +  IR
Sbjct: 174 YIHGKGSKDRLVPISETTRSALCDYIGE-----QKDIEKYVFKTEQGNVLSRDALRLIIR 228

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           ++    G+      H  RH+FA + L NGGD+ ++Q+ILGH  L   + Y  +   +   
Sbjct: 229 RIGDRAGVN-DAHPHRFRHTFAINFLRNGGDVFTLQAILGHETLDMVRRYLAIAQTDING 287

Query: 309 WMMEIYDQTHP 319
               ++ +  P
Sbjct: 288 ----VHQRASP 294


>gi|169350996|ref|ZP_02867934.1| hypothetical protein CLOSPI_01773 [Clostridium spiroforme DSM 1552]
 gi|169292058|gb|EDS74191.1| hypothetical protein CLOSPI_01773 [Clostridium spiroforme DSM 1552]
          Length = 340

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 62/316 (19%), Positives = 118/316 (37%), Gaps = 17/316 (5%)

Query: 11  SFELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
                K  +++L + + + R LS  T++SY+   + +L F+           T    S  
Sbjct: 8   DHSFWKLARSFLHEYMPLVRNLSDKTIESYKTSIKLYLRFINKEKHIINDKITFEIFSRE 67

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI---TTESNILNMRNLKKSNSLP 126
            +  +I   +  +   +++   ++ +KSFLKY  +         +N  ++R  K      
Sbjct: 68  NMTDYIIWLKNNQASPKTINLRMTALKSFLKYASEEDFELTVFYNNAKSIRGQKTIKKPI 127

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             L  +    ++      T    +     N  +L L+Y  G R+ E   L   ++  D S
Sbjct: 128 EYLKPEATKAILSAYGNDTKKHRR-----NQVLLILMYDSGCRVQELSDLKVSSLHLDVS 182

Query: 187 --TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
              + + GKG K+R VPL       + +Y D    +             +   L+     
Sbjct: 183 CPYITVIGKGKKLRNVPLTTKTVCHLKKYLDEFHDESIDEYLFYSNLDNKPHQLSTDSIA 242

Query: 245 RYIRQLRRYL-----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IY 298
             ++Q  +        +P     H +R + A  L  NG  L  I  +LGH  +STT   Y
Sbjct: 243 LILKQAVKIAREKNESVPKKVHCHMIRKTKAMDLYKNGVPLPFIMQLLGHESMSTTTGFY 302

Query: 299 TNVNSKNGGDWMMEIY 314
                +   + + + +
Sbjct: 303 AFATLEMMSEALNKTF 318


>gi|60550182|gb|AAX24185.1| integrase [Xanthomonas campestris pv. campestris]
          Length = 327

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 71/328 (21%), Positives = 126/328 (38%), Gaps = 61/328 (18%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           R  S  T Q+Y    R+F++                Q+   E+ AF++   T+  +   +
Sbjct: 19  RHYSLRTEQAYVGWIRRFILANGKRHP--------AQMGQAEVEAFLTDLATRGQVSAGT 70

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++L+ +    + +   ++     + N+   K+   +P  L+ ++   L+         
Sbjct: 71  QNQALAALLFLYREILGLEL---PWMENLVRAKRPRRIPVVLSVEEVTRLL--------- 118

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
               ++     +  LLYG G+R+ E L L  +++   +  + ++ GKG K R VPL  S+
Sbjct: 119 --TMLEGACRLMAGLLYGSGMRLLECLRLRIKDVDMVRCEIVVRDGKGGKDRRVPLPRSL 176

Query: 207 R----------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           R                             A+   Y     +       P  R       
Sbjct: 177 RGESMQQRERALLLHAADLAEGAGQVFLPHALARKYPSADVEPGWQYLFPGARRSVDPRS 236

Query: 239 NPGVFQRYIRQLRRYL--------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
                     ++R+          G+    T HTLRHSFATH    G D+R++Q +LGH 
Sbjct: 237 GRVGLHHVSEEIRQRAVHAARRRAGIDKPATCHTLRHSFATHPPEAGHDIRTVQELLGHK 296

Query: 291 RLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
            ++TTQIYT+V  + G   +    D  H
Sbjct: 297 DVATTQIYTHVLGR-GASAVRSPLDGLH 323


>gi|86741040|ref|YP_481440.1| phage integrase [Frankia sp. CcI3]
 gi|86567902|gb|ABD11711.1| phage integrase [Frankia sp. CcI3]
          Length = 322

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 65/315 (20%), Positives = 122/315 (38%), Gaps = 37/315 (11%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF-------YTEEKITIQTIR 64
            EL    +  L ++     L++ + ++Y      FL +L            + ++    R
Sbjct: 25  AELFAAYRAELDHVR----LAEHSRRAYASRVAGFLRWLDTDGAAADPTGADPLSDAHAR 80

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
             +  + RA +      K    ++   L+ +  F  +    +         +        
Sbjct: 81  DFAVRDYRAHL--LTVAKKRPATINAHLTALDHFFTWRHLGRAV-------VDRADLPEQ 131

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
            PRAL + +A  ++           +    R+  I+ LLY  G+R +E ++L   ++   
Sbjct: 132 APRALTDDEARRVLRA-------AERLPSLRDRTIIELLYNTGVRCAELVALDLDDVPVT 184

Query: 185 QST--LRIQ----GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
             T  + ++      G K R +P  P  R+A+ ++        N      LF    G+ L
Sbjct: 185 ARTGAVHVRAGKGRDGGKPRTIPANPRARRALTDWKPARAAWPNAEADPALFLNRYGRRL 244

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +     + +  L R +G+    T H LRH+FAT +L  G DL  +  +LGH R  TT++Y
Sbjct: 245 STRTVDQVVADLGRSVGID-DLTPHVLRHTFATAMLRRGADLVLVAELLGHARTDTTRVY 303

Query: 299 TNVNSKNGGDWMMEI 313
           T        D +  +
Sbjct: 304 TKPTE---ADRLRAV 315


>gi|325520794|gb|EGC99805.1| site-specific tyrosine recombinase XerD [Burkholderia sp. TJI49]
          Length = 239

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 56/236 (23%), Positives = 93/236 (39%), Gaps = 16/236 (6%)

Query: 9   IVSFELLKER---QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
             S  LL  R     +   L +E GL++ TL +Y  D   F  +LA   +  + +     
Sbjct: 16  AASPALLASRASIDAFCDALWLEHGLARNTLDAYRRDLVLFSRWLAATHDAPLDLA---- 71

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
              T +  +I+ R   K    S  R LS  + +  +  +    +    L + + K++   
Sbjct: 72  -DETMVTGYIAARSDGK--ATSSNRRLSVFRRYYGWAVREHRASADPTLRITSAKQAARF 128

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P  L+E Q   L+             +  R+  +L L+Y  GLR+SE ++L    +  ++
Sbjct: 129 PSTLSEAQVEALL-----GAPDIATPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNE 183

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNP 240
             +R+ GKG K R+VP        I  Y     P  L       LF   RG  +  
Sbjct: 184 GVVRVMGKGSKERLVPFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTR 239


>gi|296164065|ref|ZP_06846688.1| integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295900613|gb|EFG79996.1| integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 369

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 63/353 (17%), Positives = 126/353 (35%), Gaps = 75/353 (21%)

Query: 16  KERQNWLQNLE-IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +  + +L  L  IER  S  T+++Y  D + + +FL   +         R++   ++  F
Sbjct: 27  EPIERYLAYLTDIER--SPNTVKAYAHDLKDWFVFLDARS------LNWREVRLEDLGEF 78

Query: 75  ISKRR----------------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR- 117
           +S  R                       ++ R L+ I     +  +  +     +  +  
Sbjct: 79  VSWLRLPPAGRAGAVVLLPSAEHHCSAGTVNRKLAAISGLYTFHARHGVDLGDLVTELHP 138

Query: 118 --------------------------NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
                                      L+     P  L   Q   ++D            
Sbjct: 139 GRRRRSGWKPFLYHLSSGQPERRRTIKLRTPRQHPTILTAGQVQAILDAC---------- 188

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---------QGKGDKIRIVPL 202
           I  R+  +  LL+  G+RI EAL L  +++   +  L +         + K    R +P+
Sbjct: 189 IHLRDRLLWALLWDTGIRIGEALGLRHEDVAAAEGELTVAPRSNDNRARAKSATPRTIPI 248

Query: 203 LPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            P + +   +Y      DL+ + + + L+    G P         + +LRR  G+     
Sbjct: 249 SPQLIRLYADYLHDEYGDLDSDYVFVNLWGEPFGHPWGYPAVYDLVLRLRRSTGIDFD-- 306

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
            H  RH++AT LL     +  + ++LGH  ++TT  IY +++ ++    +   
Sbjct: 307 PHWYRHTYATRLLRQNTPIEVVSTLLGHSSIATTMDIYGHLSVEDARRALEAA 359


>gi|298245910|ref|ZP_06969716.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297553391|gb|EFH87256.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 328

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 67/321 (20%), Positives = 134/321 (41%), Gaps = 26/321 (8%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL----AFYTEEKITIQTIRQL-- 66
           +L +  +++L  ++++  L + T  SY+   R  +  L         EK+TI  +R    
Sbjct: 2   KLQEVIKHFL--VDVDNRLGENTHGSYQRALRHLVNLLNSVYGIDELEKVTILHLRDCVR 59

Query: 67  ----SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
               + +E+    S  +   + D S+K  ++  K F  +  + ++   +    ++  K  
Sbjct: 60  HMIDTPSEVVRERSYGKKSNLADSSVKTYVNIWKVFFNWCYQEELIDSNPSARLKAPKLE 119

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             + +    +    ++D++ L T      I  R+  IL LL   G+R+ E  +L  +++ 
Sbjct: 120 KRVLKTFTSEHIYRMLDSLNLSTD-----IGFRDYVILLLLLDTGIRLDEIGTLLLEDVH 174

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---LN 239
           D    ++++GKG K R V + P V K + +Y        N +         +      ++
Sbjct: 175 DT--YIKVRGKGRKEREVGIHPDVSKQLWKYVHKHRHPGNPDEPKIFIDCSKQGRGKAIS 232

Query: 240 PGVFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
               +  + +L+  L L     +AHT RH+FA   L+ GGD+  +   +GH  +  TQ Y
Sbjct: 233 RAGVKGMLARLKVALDLKDVRLSAHTFRHTFAKMYLAQGGDIFKLSREMGHTNVRITQKY 292

Query: 299 TNVNSKNGGDWMMEIYDQTHP 319
                        + +D   P
Sbjct: 293 L---EDFTSTEARKEHDSHSP 310


>gi|150402206|ref|YP_001329500.1| phage integrase family protein [Methanococcus maripaludis C7]
 gi|150033236|gb|ABR65349.1| phage integrase family protein [Methanococcus maripaludis C7]
          Length = 282

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 116/296 (39%), Gaps = 27/296 (9%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + LE   GLSK T+ SY+   R F         +K   +  R +   ++  F +  +  K
Sbjct: 8   RYLEFCTGLSKSTINSYKYGLRTF---------QKYANKRWRDVMVNDVILFYTNHKATK 58

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVDNV 141
               S+   L  +  F  +  + K   ++ +   ++ L++       L   QA  L+ N+
Sbjct: 59  NSKMSV---LGTVSRFYDWGIEEKYLLDNPVKKFLKTLRREKKERNYLTTSQANYLLSNI 115

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV 200
                            I   +   G+RISE ++L  Q++  D     I  GKG K R V
Sbjct: 116 KR----------YDYYVITMFILKTGVRISELVNLKVQDVDLDSKIAFIGSGKGKKDRYV 165

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-GLPLS 259
                +   + EY     +         LF G+     +      Y   +      + + 
Sbjct: 166 FFDRDLAFHLREYIKERSY--RDPKCDNLFLGVYRGHFSQRSLTLYKEYINEVAPNIHIR 223

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            T H LRH+FAT +L  G DL+S+  ILGH  LSTT IY + N +        + +
Sbjct: 224 ITPHILRHTFATSMLERGIDLKSLSLILGHEDLSTTSIYLHKNKEALQREYQRVME 279


>gi|229004115|ref|ZP_04161916.1| Integrase/recombinase [Bacillus mycoides Rock1-4]
 gi|228756976|gb|EEM06220.1| Integrase/recombinase [Bacillus mycoides Rock1-4]
          Length = 306

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 128/294 (43%), Gaps = 15/294 (5%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSL 88
            LS  T+QSY     +F  F +    E I  + IR+ +   +++++   ++T+     + 
Sbjct: 18  NLSPRTIQSYMATLHEFQEFCSER--ELIDTRDIREAT---VKSYLMYCQKTRGNNVVTR 72

Query: 89  KRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
              L  +K F  YL+   I +E  + I  M+  K+   +     ++    ++       +
Sbjct: 73  NTKLHHLKIFFNYLQHEDIISEKENPIRKMKLAKEDIKI-EVFQDEHIKQMLRYYRRLKA 131

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
               +   R+  I+  L G G R+ E +++    +     T+ + GK  K + VPL   +
Sbjct: 132 RNKSFYAYRDHTIIIFLLGTGSRLGELINIRWSELDLVNQTVTLFGKARKQQTVPLTNKL 191

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTL 265
            K   EY      +L   +   +F    GK ++    +   ++L++ +    +  +AHT 
Sbjct: 192 VKEFCEYKVFMERELG-RLPEYVFTTREGKQMSSNSVKLIFKRLKQVMNFSDVRLSAHTF 250

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           RH+FA   L  G D+ ++Q +L H  L  T+ Y ++     G  + E  D+ +P
Sbjct: 251 RHTFAHRCLMAGMDVFTLQRMLRHSNLRMTERYLSL----WGTALREQNDKFNP 300


>gi|300872277|gb|ADK38966.1| IntI4 [Vibrio sp. V48(2010)]
          Length = 293

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 73/314 (23%), Positives = 128/314 (40%), Gaps = 61/314 (19%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIK 96
           +Y     +++ F        +  +        E+  F++    Q  +  ++   +L+ + 
Sbjct: 2   AYLHWITRYIHFHNKKHPSLMGDK--------EVEEFLTYLAVQGKVATKTQSLALNSLS 53

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
              K + K  ++ E   +  +  +    LP  L   +   L++            +D ++
Sbjct: 54  FLYKEILKTPLSLE---IRFQRSQLERKLPVVLTRDENRRLLEI-----------VDPKH 99

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR-------- 207
              + LLYG GLR+ E + L  Q+I  D   + I QGKG K R V L   +         
Sbjct: 100 QLPIKLLYGSGLRLMECMRLRVQDIDFDYIAISIWQGKGGKNRTVTLAKELYPHLKEQIA 159

Query: 208 ---------------------KAILEYYDLCPFDLNLNIQLPLFR--------GIRGKPL 238
                                 A+ E Y   P++   +   P F+         +R   +
Sbjct: 160 LAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHM 219

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           N  V Q+ +R+  +  G+  + T +TLRHSFATHLL  G D+R++Q  LGH  + TTQIY
Sbjct: 220 NETVLQKAVRRSAQEAGIEKTVTCNTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIY 279

Query: 299 TNVNSKNGGDWMME 312
           T+V   +    + +
Sbjct: 280 THVLDSSASSVLSQ 293


>gi|167767979|ref|ZP_02440032.1| hypothetical protein CLOSS21_02522 [Clostridium sp. SS2/1]
 gi|167710308|gb|EDS20887.1| hypothetical protein CLOSS21_02522 [Clostridium sp. SS2/1]
          Length = 372

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 59/288 (20%), Positives = 120/288 (41%), Gaps = 30/288 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI-SKRR 79
           +L  L +E   S  T++ Y     QF+ +         T +  + +  T IR+F+ + ++
Sbjct: 100 FLATLIVE-NKSNRTIEQYNLHLTQFVNYF--------TGKDAKDIDATGIRSFLYAYKK 150

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + I + SL    S I SF  +L   +   +     ++ +K +    +A    +   +  
Sbjct: 151 NRGISNLSLNNKRSAISSFFSWLVDEEYIDKDPTRKIKKIKVTKKKKKAFTADEMERM-- 208

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                        D R+ A++ +L   G R+SE  +++  ++   +  +RI GKGDK R 
Sbjct: 209 --------RIACTDIRDRALIEMLACTGCRVSELSNISLNDVDFLRKKVRIVGKGDKERT 260

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGLP 257
           V +  +    +  Y +        +  + LF   R     L     +R +R L R   + 
Sbjct: 261 VFISDTAMIYLNRYLETRQ-----DNNIALFVSKRFPYDRLRKDGIERVVRDLGRMCNV- 314

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
                H  R +  T+L+  G  L+++  ++GH  ++ T  +Y + + +
Sbjct: 315 -YAHPHKFRRTLCTNLIMRGMPLQNVAILMGHADINMTANVYYDASDR 361


>gi|240171150|ref|ZP_04749809.1| site-specific recombinase [Mycobacterium kansasii ATCC 12478]
 gi|296165403|ref|ZP_06847944.1| site specific recombinase XerD [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295899294|gb|EFG78759.1| site specific recombinase XerD [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 366

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 65/330 (19%), Positives = 120/330 (36%), Gaps = 28/330 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFL-IFLAFYTEEKITIQTIRQLSYTEIR-AFI 75
            + +L +    R  S  TLQ+Y  D              + ++      L+   +R AF 
Sbjct: 25  FRAFLTD-RATRKPSPHTLQAYRQDFDAIASAITGADPGQDLSRLDPLDLTKDALRQAFA 83

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +          S++R  S   +   YL   ++   + +  +   K + +LPR+L  + A 
Sbjct: 84  AY--AGSHEAASIRRCWSTWNTLCTYLYTTELLPGNPMQVIGQPKPAKALPRSLPAEAAE 141

Query: 136 TLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQG 192
            L+  +    +++       R+ AI+      GLR +E       ++   D    LR++G
Sbjct: 142 ALITAIEAPAANKRATDWPERDRAIILTALLAGLRAAELRGANIGDLRLSDGGGVLRVRG 201

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLC--------------PFDLNLNIQLPLFRGIRGKPL 238
           KG K R VP+  ++   +  Y                             LF G  G  +
Sbjct: 202 KGGKHRSVPIEQALVDVLNSYLTTRAARFPATTRGRSGQNPRPQWPASAALFVGRDGARI 261

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTA----HTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
             G  Q  + +     G     T     H LRH++AT L      + ++  +LGH  ++T
Sbjct: 262 TRGALQYRVLRAFNLAGPDAQRTPGAMVHALRHTYATELAGANISVYTLMKLLGHESMAT 321

Query: 295 TQIYTNVNSKNGGDWMME--IYDQTHPSIT 322
           +Q Y             +  +Y+   P++ 
Sbjct: 322 SQRYVTAAGSETRSAAAQNPLYELLAPTVE 351


>gi|237740351|ref|ZP_04570832.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
 gi|294782552|ref|ZP_06747878.1| integrase/recombinase, phage integrase family [Fusobacterium sp.
           1_1_41FAA]
 gi|229422368|gb|EEO37415.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
 gi|294481193|gb|EFG28968.1| integrase/recombinase, phage integrase family [Fusobacterium sp.
           1_1_41FAA]
          Length = 329

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 54/299 (18%), Positives = 117/299 (39%), Gaps = 25/299 (8%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ++  + +L    +E G S+ +L+ Y+         +          ++I+ ++  ++R +
Sbjct: 52  IEYLEAFLSAKHVE-GCSRKSLKYYKATIENLFKKID---------KSIKHITTNDLREY 101

Query: 75  ISKRRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +   + +    + ++        SF  +L++     +S +  +  +K    +    +++ 
Sbjct: 102 LDNYQKEGNASKITIDNIRRIFSSFFAWLEEEDYILKSPVRRIHKVKTGTVVKETYSDEA 161

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              + DN              R+ AI+ +L   G+R+ E + L  ++I  +     + GK
Sbjct: 162 MEIMRDNCK----------SLRDLAIIDILASTGMRVGELVKLNIEDIDFEGRECVVFGK 211

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GDK R V      +  +  Y      D   N  L +      K L     +  +R+L + 
Sbjct: 212 GDKERKVYFDARTKIHLHNYLKTRDDD---NSALFVSLLKPHKRLQISGVEIMLRELGKK 268

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           L +      H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V+  N      +
Sbjct: 269 LNITK-VHPHKFRRTLATKAIDKGMPIEQVQQLLGHQKIDTTLQYAMVSQNNVKISHRK 326


>gi|172034831|ref|YP_001798608.1| integrase/recombinase [Cyanothece sp. ATCC 51142]
 gi|171701595|gb|ACB54574.1| probable integrase/recombinase [Cyanothece sp. ATCC 51142]
          Length = 290

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 64/287 (22%), Positives = 114/287 (39%), Gaps = 29/287 (10%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GL   T ++Y     QFL F+          + +  +   ++  ++     +     S+ 
Sbjct: 30  GLRLGTQKTYARTVNQFLGFVE---------KPLVNVLLEDLTRWVDLLFIKDYSQNSIA 80

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEKQALTLVDNVLLHTSHE 148
             +S IKS   Y  K      +    ++     N+L  R L + +   L++         
Sbjct: 81  LKISIIKSLFSYAWKIGYLPLNIAKAVKAPSSVNALHERILEQPEVKALIEA-------- 132

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ--STLRIQGKGDKIRIVPLLPSV 206
               + R+  IL L+Y  GLR +EALS+  +++   +      I GKG K+R V +  ++
Sbjct: 133 --AKEGRDRTILTLIYATGLRATEALSINWRDLRPRKQGGQATITGKGGKVRTVLISDNL 190

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            K + +                +F    G  L+     R +++     G+   T+ H LR
Sbjct: 191 WKELKK-------LPRSQKTEAVFTTRFGNRLDRHQLHRIVKKTAEKAGINEHTSTHWLR 243

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           H+ A H L NG D+  +   LGH  L+ T  Y +     G    ++I
Sbjct: 244 HAHACHSLENGCDIDVLMRSLGHSSLTITSKYLHARPNEGSSQFIDI 290


>gi|291528111|emb|CBK93697.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
 gi|291540208|emb|CBL13319.1| Site-specific recombinase XerD [Roseburia intestinalis XB6B4]
          Length = 328

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 58/298 (19%), Positives = 124/298 (41%), Gaps = 29/298 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L    IE G S+ TL  Y+   +Q L  +          +++  +   ++R ++++
Sbjct: 54  LEVFLSAKRIE-GCSEKTLIYYKNTIQQMLDSIG---------KSVCTIVTEDLRTYLAE 103

Query: 78  RRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            + +K   + ++        SF  +L+      +S +  +  +K ++++     ++Q  +
Sbjct: 104 YQKEKQSSKVTIDNIRRIFSSFFSWLEDEDYIIKSPVRRIHRIKAASTIKETYTDEQLES 163

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           + DN            + R+ A++ +L   G+R+ E + L   +I  D+    + GKGDK
Sbjct: 164 MRDNCD----------NPRDLALIDILASTGMRVGELVLLNRDDISFDERECIVFGKGDK 213

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYL 254
            R+V      +  +  Y      D   +    LF  ++     +  G  +  +R++ + L
Sbjct: 214 ERMVYFDARTKIHLQNYL-----DSRTDNNEALFVSLKAPYNRMKIGGIELRLREMGKRL 268

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            +      H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V   N      +
Sbjct: 269 NIEK-VHPHKFRRTLATVAIDKGMPIEQLQKLLGHQRIDTTLQYAMVKQSNVKIAHRK 325


>gi|258516804|ref|YP_003193026.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257780509|gb|ACV64403.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 348

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 62/328 (18%), Positives = 132/328 (40%), Gaps = 21/328 (6%)

Query: 14  LLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           L +    +L + +  ++  S  TL++Y      ++ FL        +           I 
Sbjct: 10  LARHINAFLNEYVPSQKTKSAHTLKAYSDALSLYIGFLETEKSINSSNLNGNCFCAANIE 69

Query: 73  AFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKIT---TESNILNMRNLKKSNSLPRA 128
            ++      +     +    L+ +++FLKYL  R ++      +   +   K        
Sbjct: 70  DWLVWLMESRSCSPETCNNRLASLRAFLKYLSSRDVSYLHLSQSASQIERRKVYTKKVTG 129

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ--NIMDDQS 186
           +++K    L++         +     R+ A++ ++Y    RI E LS+  +  ++  D+ 
Sbjct: 130 MSKKAVSALLE-----APDSSTKAGRRDIALMVVMYSTAARIDEILSMRIEQLHLDTDKP 184

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---LNPGVF 243
            + + GK  KIR + LLP     +  Y          N    +F      P   ++    
Sbjct: 185 NITVIGKRGKIRTLYLLPKATAHLRAYIKDSHG-ATPNPSSFVFYSRNTGPAGKMSQKAV 243

Query: 244 QRYIRQLRRYL-----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            + +R+  +        +P    AH LRH+ ++H L +G ++  I  +LGH +L TT +Y
Sbjct: 244 NKQLRKHAQAARSVCGEVPAEIHAHQLRHAKSSHWLEDGMNIVQISFLLGHAQLQTTMVY 303

Query: 299 TNVNSKNGGDWMMEIYDQTHPSITQKDK 326
            ++ ++     +  + D+   S+T+K +
Sbjct: 304 LDITTEQEAKALATLEDENDKSLTKKWR 331


>gi|257091624|ref|YP_003165267.1| hypothetical protein CAP2UW1_4695 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048633|gb|ACV37820.1| hypothetical protein CAP2UW1_4695 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 318

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 122/297 (41%), Gaps = 15/297 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +   +  E   +  +L   RGL+  T +++     Q L       +    + TI +LS  
Sbjct: 19  IPDPIADELHRYDDHLRDVRGLAAGTRRNHCRIVAQLL-----RKKFAGGVVTIAKLSAA 73

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLPR 127
           ++R FI+++        +  +  + ++S+L+Y      +       + +  +    SLPR
Sbjct: 74  DVRRFIARQLGDSPSHSAAAQVATALRSYLRYRTVCGDSVVRLSAAISSPVQWKLASLPR 133

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           AL   +   L    L    +  K       AI+      GLR  E  +L+   I   + T
Sbjct: 134 ALKPDEVQRL----LAALPYGRKPRRG--YAIVRCALDMGLRAGEIANLSIDAIDWREGT 187

Query: 188 LRIQGKGDKIRIVPLLPSVR-KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           + ++G   + + +  LP    +A+ +Y                 R  R  P+     +  
Sbjct: 188 VTLKGTKSRRQDILPLPMATGQALADYLQHERLANPSRALFLCRRESRDIPITTYAVENV 247

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           IR+  R  GLP S + H LRH+ A  L+ NG  L+ +  +L H  L TT+IY  +++
Sbjct: 248 IRRACRRAGLPDSGS-HLLRHTLACRLVGNGSSLKEVADVLRHRSLETTRIYAKLDT 303


>gi|254774453|ref|ZP_05215969.1| phage integrase family protein [Mycobacterium avium subsp. avium
           ATCC 25291]
 gi|254777680|ref|ZP_05219196.1| phage integrase family protein [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 357

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 69/352 (19%), Positives = 131/352 (37%), Gaps = 74/352 (21%)

Query: 16  KERQNWLQNLE-IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
                +L  L  IER  S  T+++Y  D + +  FLA            R +   ++  F
Sbjct: 16  AAVDRYLAYLTDIER--SPNTVKAYAHDLKDWFGFLAERG------LDWRAVRLDDVGEF 67

Query: 75  ISKRR----------------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTES------- 111
           ++  R                     + ++ R LS + +F  +  +  +   +       
Sbjct: 68  VAWLRLPLRARHGQVAVLPSVPHHCTESTVNRKLSAVGAFYTHAARDGLDVSALLTSWQV 127

Query: 112 --------NIL-----------NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
                     L            +  LK    LPR L+  +   ++D             
Sbjct: 128 GGARGGWKPFLHHISKGAPRSRRVIALKAPKKLPRVLSPDEVQAILDGCGR--------- 178

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---------KGDKIRIVPLL 203
             R+  +  +LY  G+RI EAL L   +I   +  + ++          K   +R +P+ 
Sbjct: 179 -LRDRLLFAVLYDTGMRIGEALGLRHNDIAAAEHEVTVRRRDNANGARAKSQTVRTIPVS 237

Query: 204 PSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            ++ +   +Y      DL+ + + + L+   +G PL        +R+LRR  G+      
Sbjct: 238 SALIRLFADYLHSEYGDLDSDYVFVNLWGRPQGHPLTYAAVYDLVRRLRRRTGIDFD--P 295

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDWMMEI 313
           H LRH+ AT LL +G  +  +  +LGH  ++ TT  Y ++  ++    M + 
Sbjct: 296 HWLRHTAATRLLRDGVSIEVVAHLLGHAHVATTTTTYGHLTVEDARRVMEQA 347


>gi|149195410|ref|ZP_01872494.1| Integrase [Caminibacter mediatlanticus TB-2]
 gi|149134460|gb|EDM22952.1| Integrase [Caminibacter mediatlanticus TB-2]
          Length = 315

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 68/309 (22%), Positives = 134/309 (43%), Gaps = 11/309 (3%)

Query: 13  ELLKERQNWLQNLEIERGL---SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           E+ K+ + WL     +R L   S+ T+ +++    +F+ F              +  +  
Sbjct: 8   EIEKDLEFWLNEAIKDRKLLNQSENTIYTFKNSIEKFIEFCYLERINDYPDLDFKDFNKY 67

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPR 127
            I+ +IS  +       S+   L  + +F K++ +        +  +  +  K+  ++  
Sbjct: 68  FIKNYISYLKDLNYKPSSINTHLKYLYAFFKFISENNEDGVDLLYKLDKIFLKEEKNVIY 127

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS- 186
             + ++   +   ++   +    +   RN+ I+YLL   G R+SE ++L   +I ++   
Sbjct: 128 TFSNEELEKIQLALINKLNLTKSYTTFRNAFIVYLLSLTGARVSEIINLKNDDIKENGEF 187

Query: 187 -TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             L++ GKG+K RIVP+        LE         N+N +  L    +G        Q 
Sbjct: 188 FYLKLTGKGNKERIVPIEKDYIIDFLEKLQELKDKDNINSEYFL-PDKQGYKTAITSIQS 246

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
           + + L + LG+  +   H  RH+FAT LL  G D+ +I+ +LGH  + TT   Y  V  K
Sbjct: 247 FNKTLLKNLGIKGNI--HQYRHTFATILLEKGVDINTIKELLGHSSIQTTASYYAKVTDK 304

Query: 305 NGGDWMMEI 313
              + + ++
Sbjct: 305 AKQEAIRKL 313


>gi|300727390|ref|ZP_07060803.1| phage integrase family protein [Prevotella bryantii B14]
 gi|299775330|gb|EFI71927.1| phage integrase family protein [Prevotella bryantii B14]
          Length = 328

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 54/293 (18%), Positives = 113/293 (38%), Gaps = 29/293 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS- 76
             N++   ++E G S  ++  Y+      L+ +          + +  ++  ++R +++ 
Sbjct: 54  IDNFIAAKKVE-GCSDKSISYYKSTINNALVKIK---------KEVVHITTDDLRGYLNQ 103

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            +        ++      + SF  +L++     +S +  +  +K   ++     ++    
Sbjct: 104 YQEESGASKVTVDNIRRILSSFFSWLEEENYIVKSPVRRIHKVKVGKTVKETYTDEALEQ 163

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           + D+            + R+ A++ LL   G+R+ E + L   +I        + GKGDK
Sbjct: 164 MRDHC----------SNIRDLALIDLLASTGMRVGELVRLNKNDIDYQNRECIVTGKGDK 213

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--RGKPLNPGVFQRYIRQLRRYL 254
            R V      +  + +Y +        +    LF  +      L     +  +R+L R L
Sbjct: 214 QRKVYFDARTKIHLQKYVNSR-----TDTNDALFVSLLSPNNRLEISGVEIRLRRLGREL 268

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +P     H  R + AT  +  G  +  +Q +LGH  L TT  Y  VN  N  
Sbjct: 269 NIPK-VHPHKFRRTLATMAIDKGMPIEQVQHLLGHQSLDTTLQYAMVNQNNVK 320


>gi|315505957|ref|YP_004084844.1| integrase family protein [Micromonospora sp. L5]
 gi|315412576|gb|ADU10693.1| integrase family protein [Micromonospora sp. L5]
          Length = 329

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 65/303 (21%), Positives = 119/303 (39%), Gaps = 30/303 (9%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P  +        + WL+N    R LS+ T  +Y  D   +L + A    + +      + 
Sbjct: 12  PAALPAGPADVTEAWLRN----RRLSEHTRDAYRRDVTGWLTWCAEQAVDPL------RA 61

Query: 67  SYTEIRAFISKRRT-------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           ++ ++ A+  +  +       + +   ++ R LS + S+  +L K      + +      
Sbjct: 62  TFLDVNAYGRELESTPRGRAGRPLTPATVARRLSALSSWYDFLVKLGAVPANPVSAADRP 121

Query: 120 KKSN--SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           +     S    L   +   L+         +T    ARN A + LL   GLR+ E ++L 
Sbjct: 122 RVDRDHSATVGLTPDEVDALI----AAAEADTGPAAARNRAAVALLADLGLRVGELVALD 177

Query: 178 PQNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRG 232
             ++  ++    +R  GKG K+R   L P    A+  Y  +      +    +  PL   
Sbjct: 178 VSDLGTERGHRSIRFVGKGGKVRRRALTPGTAYAVDAYLAVRAAAQGVTVPELTGPLLVT 237

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPL--STTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             G  L+     R +R+L +  G+      + H+LRH+FAT   S G  L  +Q  +GH 
Sbjct: 238 ATGGRLDRHAVFRLVRRLAQRAGIAAWAKLSPHSLRHAFATTARSEGVPLEDVQDAMGHA 297

Query: 291 RLS 293
              
Sbjct: 298 DPR 300


>gi|262068300|ref|ZP_06027912.1| integrase/recombinase, phage integrase family [Fusobacterium
           periodonticum ATCC 33693]
 gi|291377988|gb|EFE85506.1| integrase/recombinase, phage integrase family [Fusobacterium
           periodonticum ATCC 33693]
          Length = 329

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 56/299 (18%), Positives = 117/299 (39%), Gaps = 25/299 (8%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ++  + +L    +E G S+ +L+ Y+         +          ++I+ ++  ++R +
Sbjct: 52  IEYLEAFLSAKHVE-GCSRKSLKYYKATIENLFKKID---------KSIKHITTNDLREY 101

Query: 75  ISKRRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +   + +    + ++        SF  +L++     +S +  +  +K    +    +++ 
Sbjct: 102 LDNYQKEGNASKITIDNIRRIFSSFFAWLEEEDYILKSPVRRIHKVKTGTVVKETYSDEA 161

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              + DN              R+ AI+ +L   G+R+ E + L  ++I  +     + GK
Sbjct: 162 MEIMRDNCK----------SLRDLAIIDILASTGMRVGELVKLNIEDIDFEGRECVVFGK 211

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GDK R V      +  +  Y      D   N  L +      K L     +  +RQL R 
Sbjct: 212 GDKERKVYFDARTKIHLHNYLKTRDDD---NSALFVSLLKPHKRLQISGVEIMLRQLGRK 268

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           L +      H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V+  N      +
Sbjct: 269 LNITK-VHPHKFRRTLATKAIDKGMPIEQVQQLLGHQKIDTTLQYAMVSQNNVKISHRK 326


>gi|329926877|ref|ZP_08281280.1| site-specific recombinase, phage integrase family [Paenibacillus
           sp. HGF5]
 gi|328938864|gb|EGG35237.1| site-specific recombinase, phage integrase family [Paenibacillus
           sp. HGF5]
          Length = 343

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 58/296 (19%), Positives = 117/296 (39%), Gaps = 26/296 (8%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-------- 81
           GL K T++ YE     F+ +L     E    + I  +S   +R F+   +          
Sbjct: 36  GLRKRTIRDYEKHYGYFVKWLRVNHPE---AEYIEDVSAAILRDFVLYMKHDARRYDGHK 92

Query: 82  ---------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
                     + D ++   L  +K+    L++ ++   +    ++ L++   L   L ++
Sbjct: 93  YINSDKQRIGLEDTTINIRLRTLKALFNQLERDELIEVNPAGPVKLLRQDVDLTNGLTDE 152

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   ++            ++  R+   + L+   GLRISE LSL   +I      + + G
Sbjct: 153 EVTAIL-----AQPDRRDFVGFRDYVAICLMLDSGLRISEMLSLRAADIDFQTRFITLPG 207

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
             +K R   L+P   +       L   +        LF    G P+    F + ++    
Sbjct: 208 DRNKNRKPRLVPISAQVTKLLLQLIDENRAHFTTDRLFLSCYGDPVTANHFNKRLKYYGE 267

Query: 253 YLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
             G+     TAH  RH++A  ++ NG DL ++Q + G   + T + Y  +++++  
Sbjct: 268 KAGIEGKKMTAHVYRHTWARSMVLNGADLFTLQKMGGWQDVRTMRRYVQMDTRDVR 323


>gi|183219889|ref|YP_001837885.1| putative integrase/recombinase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910016|ref|YP_001961571.1| tyrosine site-specific recombinase XerC [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167774692|gb|ABZ92993.1| Tyrosine site-specific recombinase XerC [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167778311|gb|ABZ96609.1| Putative integrase/recombinase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 428

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 131/300 (43%), Gaps = 34/300 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++ +    ER  S  T ++Y     + L+F      EK+ I     ++  ++  ++  
Sbjct: 137 LEDFFRAAR-ERNFSFCTTKTYYSHLYRLLLFT-----EKLPI----NINSRDLENYLDF 186

Query: 78  R-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           + + + +   +++ +      + +      +  +   L    +K    LP  L+ ++   
Sbjct: 187 QVKEKTVKSATIRGARQAFIFYFR-----DVRQQMKHLKFPKIKSDVKLPEVLSAEETRA 241

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195
           +               + ++  +L + Y  GLR+SE + L  ++I  +++ +RI QGKG 
Sbjct: 242 IF----------NSLPNIKHKMLLLISYSAGLRVSEVIHLKTKDIDLERNMIRITQGKGK 291

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-------PLFRGIRGKPLNPGVFQRYIR 248
           K R   L  S+   + EY  +  ++L L            LF G   KPL+    +    
Sbjct: 292 KDRYTILANSLVFELQEYLKIREYNLLLKYSYNEVKNIPWLFPGAGTKPLHIRTAETIFN 351

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           Q      +    T H+LRH+FATHLL  G DLR IQ++LGH  + TTQIYT V      +
Sbjct: 352 QAAAKAKITKKVTFHSLRHAFATHLLELGTDLRMIQTLLGHSSVRTTQIYTKVARSRLEN 411


>gi|326331609|ref|ZP_08197898.1| putative integrase/recombinase XerD [Nocardioidaceae bacterium
           Broad-1]
 gi|325950597|gb|EGD42648.1| putative integrase/recombinase XerD [Nocardioidaceae bacterium
           Broad-1]
          Length = 334

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 112/299 (37%), Gaps = 33/299 (11%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N LP+    E L   + +L         +  T  +Y  D   +  + A    + +     
Sbjct: 30  NELPQEKRAEALA--RRFLL------SYAGHTRAAYARDLADWFGWCAALEIDPLAA--- 78

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
              +   +  +     T++    ++ R LS I  F +Y     + + S   +++  K S 
Sbjct: 79  ---NRAMVDGYARHLETRR-SPATIARRLSAIAGFYRYGVAEDVLSASPAQHIKRPKTS- 133

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--I 181
                 N+ Q L +            +   +R +A++ LL   GLRISEAL     +   
Sbjct: 134 ------NDSQTLGMDRGEARAFLAAAREHSSRAAALVMLLLHDGLRISEALGADVTDLSH 187

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
                 L I  KG   R V L P+  +A+  Y       L+  +  P+F    G   +  
Sbjct: 188 SRGHRILTITRKGGARRDVVLNPATSQALDAY-------LDARVDGPVFVTSTGNRWHRS 240

Query: 242 VFQRYIRQLRRYLGLP--LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              R IR+L    G+      + H+LRH+F T     G  L  +Q   GH    TT+ Y
Sbjct: 241 EAFRLIRRLGASAGIEHGDKLSPHSLRHTFVTLAREAGVPLEDVQDAAGHADPRTTRRY 299


>gi|37515379|emb|CAE48333.1| IntI1 DNA integrase [Pseudomonas aeruginosa]
 gi|46092528|dbj|BAD14384.1| integrase [Pseudomonas aeruginosa]
          Length = 296

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 67/315 (21%), Positives = 124/315 (39%), Gaps = 64/315 (20%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLRS 282
           SFAT LL +G D+R+
Sbjct: 282 SFATALLRSGYDIRT 296


>gi|149198037|ref|ZP_01875085.1| Integron integrase [Lentisphaera araneosa HTCC2155]
 gi|149138949|gb|EDM27354.1| Integron integrase [Lentisphaera araneosa HTCC2155]
          Length = 419

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 76/322 (23%), Positives = 141/322 (43%), Gaps = 64/322 (19%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-I 83
           + ++R  S  T Q+Y    +++L+F+              +LS   +  F+S    +K +
Sbjct: 110 MRLQR-KSYKTEQAYCSWIQRYLVFVKG-----------EELSGENVSRFVSHLAVEKNV 157

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
              +  ++ + +  F +Y+ ++++   S    +R ++KS  LP  L  ++   ++  +  
Sbjct: 158 ASSTQNQAFNALVFFFRYVLEKEVGDLSQT--LRAIRKSK-LPLVLTREEVCKIMAKM-- 212

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPL 202
                    +     ++ L+YG GLR SEA  +  +++  ++  L ++ GKGDK R VPL
Sbjct: 213 ---------EGVPLLMVRLIYGGGLRHSEAYRMRVKDVDMERMCLTVKSGKGDKDREVPL 263

Query: 203 LPSVRKAILE------------------------------------YYDLCPFDLNLNIQ 226
             S+ + + E                                    +     F  N+   
Sbjct: 264 GESLVEELHEHLKKIREIYDEDRSNGVEGCYLPGALENKYPNAGKEWGWFWLFPANVLSN 323

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
            P    IR   +         +Q  R  G+    T HTLRHSFATH+L +G D+R++Q +
Sbjct: 324 DPRANKIRRHHVLSSYLSGPYKQALRAAGIAKVATIHTLRHSFATHVLEDGYDIRTLQEL 383

Query: 287 LGHFRLSTTQIYTNVNSKNGGD 308
           +GH  ++TTQIYT+V  K+  +
Sbjct: 384 MGHNDVNTTQIYTHVMGKHKSN 405


>gi|237744716|ref|ZP_04575197.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
 gi|229431945|gb|EEO42157.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
          Length = 329

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 56/296 (18%), Positives = 115/296 (38%), Gaps = 25/296 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L    +E G S+ +L+ Y+         +          ++I+ ++  ++R ++  
Sbjct: 55  LEAFLSAKHVE-GCSRKSLKYYKATIENLFKKIE---------KSIKHITTNDLREYLDN 104

Query: 78  RRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            + +    + ++        SF  +L++     +S +  +  +K    +    +++    
Sbjct: 105 YQKEGNASKITIDNIRRIFSSFFAWLEEEDYILKSPVRRIHKVKTGTVVKETYSDEAMEI 164

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           + DN              R+ AI+ +L   G+R+ E + L  ++I  +     + GKGDK
Sbjct: 165 MRDNCR----------SLRDLAIIDILASTGMRVGELVKLNIEDIDFEGRECVVFGKGDK 214

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R V      +  +  Y      D   N  L +      K L     +  +RQL R L +
Sbjct: 215 ERKVYFDARTKIHLHNYLKTRDDD---NSALFVSLLKPHKRLQISGVEIMLRQLGRKLNI 271

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                 H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V+  N      +
Sbjct: 272 TK-VHPHKFRRTLATKAIDKGMPIEQVQQLLGHQKIDTTLQYAMVSQNNVKISHRK 326


>gi|119774492|ref|YP_927232.1| phage integrase family site specific recombinase [Shewanella
           amazonensis SB2B]
 gi|119766992|gb|ABL99562.1| site-specific recombinase, phage integrase family [Shewanella
           amazonensis SB2B]
          Length = 318

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 67/314 (21%), Positives = 125/314 (39%), Gaps = 60/314 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           RG S  T ++Y    + +++F      + +           EI AF++     + +   +
Sbjct: 17  RGYSLRTEKTYLHWIKFYILFNQKRHPDTMG--------SAEITAFLTYLAVERHVAANT 68

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
            K +L+ +    +   + ++      L      K  SLP  + + +   ++         
Sbjct: 69  QKVALNALIYLYQKFLQIELGE----LPFSLATKQRSLPIVVTQTEVAHIL--------- 115

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
               +   +  ++ +LYG GLR++E L L  Q++  ++ ++ +  GKG+K R   L  S 
Sbjct: 116 --AKLSGVHLHVIQMLYGSGLRVTECLRLRVQDVDLERLSVTVHDGKGNKDRQTLLSRSC 173

Query: 207 RKAI-----------------------------------LEYYDLCPFDLNLNIQLPLFR 231
              +                                    E   +  F  +     P+  
Sbjct: 174 LNWLPDQIEHSLNIQQKDNQRGIGPSMPTALSVKYPNAFREPGWMYLFPSSGLCPHPITG 233

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
            I    L+    ++ +R   R+ G+      HT RHSFATHLL  G D+R++Q +LGH  
Sbjct: 234 EICRHHLHDSAIRKALRIAVRHAGVRKKVNCHTFRHSFATHLLQAGYDIRTVQELLGHND 293

Query: 292 LSTTQIYTNVNSKN 305
           + TTQIYT+V  ++
Sbjct: 294 VKTTQIYTHVLGQH 307


>gi|291531147|emb|CBK96732.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 305

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 128/294 (43%), Gaps = 22/294 (7%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK----RRTQKIG 84
           R  SK TL  Y  +   F  +L     E   + ++   +Y     F+      R  Q + 
Sbjct: 22  RNNSKRTLIWYNENLSAFFNWLG----ENKNVDSLTVENYKSYCTFLQHDYVKRNGQPLK 77

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTE-SNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
             S+   +  IK+F  Y  +  +  + S  L    ++K+  LP  L++ +  TLV     
Sbjct: 78  SSSVNSRVRAIKAFYNYCIEEDLLPDFSKKLKATKIRKTEKLP--LDDDEIHTLV----- 130

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
            ++     ++ RN   + L+   GLR  E ++L   N+   +  + + GKGDK R VPL 
Sbjct: 131 -SAFGDSALEERNRCWVILMCDSGLRRGEIINLQIGNVHLARGFMIVTGKGDKQRFVPLG 189

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              + ++  Y     +        P+F    G+       ++  ++L++  G+ L   AH
Sbjct: 190 ELSKISLATYI--RKYRNEAKESEPVFVNRFGEKCTINTVKQVFQKLKKQTGI-LRLHAH 246

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            LRH+FAT+ L +GGDL +++ ++GH  L  T +Y ++        +   +   
Sbjct: 247 LLRHTFATNYLVDGGDLETLRLLMGHSDLQVTMMYLHLA--ENKKLLQRKHQSH 298


>gi|159038073|ref|YP_001537326.1| integrase family protein [Salinispora arenicola CNS-205]
 gi|157916908|gb|ABV98335.1| integrase family protein [Salinispora arenicola CNS-205]
          Length = 332

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 114/291 (39%), Gaps = 30/291 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI--- 75
           + WL N    R LS  T  +Y  D   +L + A    + +      Q ++  + A+    
Sbjct: 27  EAWLGN----RRLSDHTRDAYRRDVAGWLGWCAGADLDPL------QATFLHVNAYARTL 76

Query: 76  ----SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLPRAL 129
               + R  + +   ++ R LS + S+  +L K +    + +            S    L
Sbjct: 77  ESTPTARSGKPLTPATVARKLSALSSWYDFLVKLRAVGVNPVTGADRPHVDRDHSATVGL 136

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-- 187
             ++   +    L+     +    ARN A + LL   GLR+ E +SL   ++  ++    
Sbjct: 137 TPEEVNAM----LVVADTASGPTAARNRAAVALLADLGLRVGELVSLDITDLGVERGHHS 192

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIRGKPLNPGVFQ 244
           +R  GKG + R   L P    A+  Y         +    +  PL     G  L+     
Sbjct: 193 VRFAGKGGRARRRALTPHTSSAVHAYLTQRAGAAGVPTHRLTGPLLVTSTGARLDRHSVF 252

Query: 245 RYIRQLRRYLGLP--LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R +R+L R  G+P     + H+LRHSFAT   + G  L  +Q  +GH    
Sbjct: 253 RLVRRLARAAGIPGWARLSPHSLRHSFATTARAEGVPLEDVQDAMGHADPR 303


>gi|315222639|ref|ZP_07864528.1| site-specific recombinase, phage integrase family [Streptococcus
           anginosus F0211]
 gi|315188325|gb|EFU22051.1| site-specific recombinase, phage integrase family [Streptococcus
           anginosus F0211]
          Length = 322

 Score =  149 bits (376), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 59/296 (19%), Positives = 111/296 (37%), Gaps = 25/296 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS- 76
            Q +L    +E G S  T+  YE   R           EKI  + + +++  ++R F+  
Sbjct: 48  IQLFLAAKRVE-GCSNKTVHYYESTIRN--------AVEKID-KDVVKITTDDLRMFLDG 97

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            +    I   ++      + SF  +L+      +S++  +  +K   ++     ++    
Sbjct: 98  YQEENNISKVTVDNIRRILSSFFAWLEDEDYIVKSSVRRIHKVKTCKTVKETYTDEALEI 157

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           + D               R+ A++ LL   G+R+ E + L   +I  +     + GKG+K
Sbjct: 158 MRDECD----------GLRDLAMIDLLASTGMRVGELVKLNCDDIDFENRECVVLGKGNK 207

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R V      +  + +Y +      + N  L +        L     +  +R L   L L
Sbjct: 208 QRRVYFDARTKLHLQKYLNSRE---DSNEALFVSLQKPYNRLLISGVEIRLRNLGEKLNL 264

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                 H  R + AT  +  G  +  +Q +LGH  + TT  Y  VN  N      +
Sbjct: 265 HK-VHPHKFRRTLATTAIDKGMPIEQVQQLLGHQSIDTTLQYAMVNQNNVKQSHRK 319


>gi|124010377|ref|ZP_01695023.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134]
 gi|123983544|gb|EAY24009.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134]
          Length = 295

 Score =  149 bits (376), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 74/299 (24%), Positives = 124/299 (41%), Gaps = 26/299 (8%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E L+  + WL++L    G +  T   Y    R+FL FL     E+     + ++  +++ 
Sbjct: 13  EHLQGFEAWLRSL----GYASSTCDKYPRQLREFLYFL-----EQQGRFGLAEVGASDVS 63

Query: 73  AFISKRRTQK-------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           A+      ++       +    L+     ++ F +YL+   +   S +  +     S + 
Sbjct: 64  AYFDYLSGRRSVKTGELLSHSHLRSVRKTLRGFQRYLRSLGVPVFS-LPGVSLPGLSAAP 122

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
            R L+  +   L D               R+ A+L L YGCGLR SE   L   ++   +
Sbjct: 123 IRVLSRVEVGLLYDGC------GFDHWGLRDQALLSLGYGCGLRRSEIHLLDVGDVHFKK 176

Query: 186 STLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR-GIRGKPLNPGVF 243
             +++  GKG K R VP++  V+  +  Y        +     P F    RG  L P   
Sbjct: 177 GWVQVLSGKGRKERFVPMVGRVKDDLYAYLTEGRRFFSGRSPSPAFLLSQRGHRLGPKSL 236

Query: 244 QRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              + +L     L       H+LRHS ATHL + G  L  +   LGH  L +TQ+YT++
Sbjct: 237 SERLEKLATKAELSGGSVGLHSLRHSIATHLHNGGMSLSKVSLFLGHSSLDSTQLYTHL 295


>gi|309808160|ref|ZP_07702071.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
 gi|308168596|gb|EFO70703.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
          Length = 329

 Score =  149 bits (376), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 65/313 (20%), Positives = 127/313 (40%), Gaps = 37/313 (11%)

Query: 8   EIVSFELLKER--QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           E V+ EL  E+   N+L    IE G S+ +L  Y          +          + +R+
Sbjct: 43  EEVNAELTNEQFLNNFLAAKRIE-GCSEKSLTYYRATIEVMTTKIK---------KNVRE 92

Query: 66  LSYTEIRAFISKRRTQKIGDR----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           +   ++R ++++ + +K   +    +++R LS   SF  +L+      +S    +  +K 
Sbjct: 93  METDDLRTYLTEYQHEKNSSKVTVDNIRRILS---SFFSWLEDENYILKSPARRIHKVKA 149

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           + ++     ++    + D+            + R+ A++ +L   G+R+ E + L   +I
Sbjct: 150 ALTIKETYTDEALEKMRDSCE----------EPRDLALIDILASTGMRVGELVLLNRDDI 199

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLN 239
             ++    + GKG K R+V      +  +L Y      D        LF  +R   + L 
Sbjct: 200 NFEERECVVFGKGSKERMVYFDARTKIHLLTYLQGRTDD-----NPALFVSLRAPHERLR 254

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            G  +  +R+L   L +      H  R + AT  +  G  +  +Q +LGH R+ TT  Y 
Sbjct: 255 IGGVECRLRELGNKLNIEK-VHPHKFRRTLATMAIDKGMPIEQLQQLLGHKRIDTTLQYA 313

Query: 300 NVNSKNGGDWMME 312
            V   N      +
Sbjct: 314 MVKQSNVKLAHRK 326


>gi|83815097|ref|YP_445629.1| tyrosine recombinase xerC [Salinibacter ruber DSM 13855]
 gi|83756491|gb|ABC44604.1| tyrosine recombinase xerC [Salinibacter ruber DSM 13855]
          Length = 311

 Score =  149 bits (376), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 65/303 (21%), Positives = 107/303 (35%), Gaps = 53/303 (17%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  T + Y  D  QF+ F+            +R ++   ++ +    +       S KR 
Sbjct: 11  SARTQEEYARDFEQFVEFVDL---------PLRYVTLGHLQEYREHLKD-GYARSSQKRK 60

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNEKQALTLVDNVLLHTSHETK 150
           LS +KS   +  K +    +    +      N    R L+E     L+            
Sbjct: 61  LSAVKSLFTFGTKLRYFAHNVGAALSTPSVRNDRAERILSEADLWALL----------RD 110

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDD----------QSTLRIQGKGDKIRIV 200
             D RN  +L L Y  G RIS+   L  +++ D              +   GKG K R V
Sbjct: 111 ERDLRNHVLLRLFYASGGRISDVEDLRWRDLKDRPDLNGPDGRPGGQVTFFGKGGKTRAV 170

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-- 258
            L   V   I+   +    + +     P+FR  +G  L+     R +++     G+ L  
Sbjct: 171 TLYSKVWSLIIRLRENEESEGHGAADDPVFRSQKGGCLSRSQIWRVVKKAAVRAGVKLTE 230

Query: 259 --------------------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                                 + H  RH+ A+H L  G DL  ++  LGH  + TT+ Y
Sbjct: 231 KTGSEGAVKRDEEGEPIMTSEVSPHWFRHAHASHALQKGADLELVRETLGHESIETTKTY 290

Query: 299 TNV 301
            + 
Sbjct: 291 LHA 293


>gi|330880190|gb|EGH14339.1| Phage integrase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 271

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 60/251 (23%), Positives = 111/251 (44%), Gaps = 18/251 (7%)

Query: 59  TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE-SNILNMR 117
           +    R ++ + + A+ +    + +   +++R L+ + S   +L +       + +  ++
Sbjct: 11  SADEFRVVTRSHVLAWRAHLEHRGLAGATIRRKLAALASLFDHLLENNAIAGGNPVHGVK 70

Query: 118 NLKKSNSLPRALNEKQALTLVDNV---LLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
             +  +      NE +   L D+    LL    ET     R+ A+L +L   GLR  EA 
Sbjct: 71  RPRIES------NEGKTPALGDHQAKALLEAPDETTLKGQRDRALLAVLLYHGLRREEAA 124

Query: 175 SLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
            L   +I + +    L++ GKG K+R +PL P     I +Y +     L    ++PLF  
Sbjct: 125 LLQVSDIQERRGIQHLKVHGKGGKVRYLPLHPIAAGRIHQYLENSEHHLAER-KVPLFMP 183

Query: 233 IRGK----PLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           +RGK     +        +    +  G+       H LR + AT+ L +  D+  +Q+ L
Sbjct: 184 LRGKLTGAGITANGIYAVVTAYAKKAGIEVDGLGVHGLRATAATNALEHEADIAKVQAWL 243

Query: 288 GHFRLSTTQIY 298
           GH  +STT+IY
Sbjct: 244 GHANISTTKIY 254


>gi|237719899|ref|ZP_04550380.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229450451|gb|EEO56242.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 337

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 67/332 (20%), Positives = 136/332 (40%), Gaps = 19/332 (5%)

Query: 11  SFELLKERQNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           + ++      WL+  +   +  S  T ++Y+     +  FL                   
Sbjct: 9   AIQIASYLHEWLEYYVPSIKACSPHTKRNYKISVTLYAEFLKKVKGILPETLNAECFCRK 68

Query: 70  EIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL---NMRNLKKSNSL 125
            I  +I   +  +     +    LS +++FLKY+  R +T  +  L   N+ N K     
Sbjct: 69  YIMEWIIWMKSDRNCTFATCNVRLSALRAFLKYVADRDMTYMAVFLQAENIPNEKTPKRK 128

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD- 184
              L++K    ++        ++      R+  ++ LLY   +R++E L+L   NI+ D 
Sbjct: 129 VIGLSKKAVKAIL-----SVPNQRTATGFRDFTLMLLLYSTAIRVNELLTLKISNIVMDC 183

Query: 185 -QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPG 241
            +  + + GKG K R +PLL    + +  Y        N    L  +   +    P++  
Sbjct: 184 TKPHMIVIGKGRKKRPLPLLSQPVQCLKRYLKKYHPKYNDMDALIFYSKSKGVYAPMSAE 243

Query: 242 VFQRYIRQLRRYLG-----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
              + +++           +PL+  AH  RH+ A+H L NG ++  I  +LGH  + TT 
Sbjct: 244 NVNKMLKKYALIAHETCEDVPLNLHAHQFRHAKASHWLENGMNIAQISYLLGHECIQTTM 303

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
            Y ++ ++     +  + +++  ++ +K K N
Sbjct: 304 AYLDITTEQEEKALETLENESQKNMAKKWKNN 335


>gi|254417428|ref|ZP_05031169.1| site-specific recombinase, phage integrase family protein
           [Microcoleus chthonoplastes PCC 7420]
 gi|196175771|gb|EDX70794.1| site-specific recombinase, phage integrase family protein
           [Microcoleus chthonoplastes PCC 7420]
          Length = 319

 Score =  148 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 72/311 (23%), Positives = 134/311 (43%), Gaps = 25/311 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE----- 55
           M+G +L   ++   L + Q+ L  + ++   S  T  +Y  D R F   +A   E     
Sbjct: 1   MDG-SLSTSINDSWLSQSQDDLIFMLLQDKRSPHTRAAYGKDLRNFFFVVANTPEPTPQI 59

Query: 56  --EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI 113
             E +++     +S   +  + +    Q +   ++ R L+ IKS +K+ +K      S +
Sbjct: 60  VIEFLSLDRFAAVSL--VLKYKAFLLEQGLMPATVNRRLAAIKSLVKFARKIGRCNYS-L 116

Query: 114 LNMRNLK-KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
            ++   + ++      ++ K    ++          +     R+ AIL+LL+   LR SE
Sbjct: 117 EDIEGERNRAYRDTTGIDIKAFKRVLMEC-----DRSTKKGLRDYAILHLLWSNALRRSE 171

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVP-LLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            +SL  ++   +  TL I GKG   R V  +  +  +AIL + +       ++ + PLF 
Sbjct: 172 VVSLDVKDFEPNNKTLTILGKGQASRQVISISEATTQAILAWLNERNC---VDPKAPLFV 228

Query: 232 ----GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                 RG  L     ++ +    +  G+    + H +RHS  TH L   GD+R +Q + 
Sbjct: 229 AVSYNKRGNRLTGEALRQLVCLYCKKAGISKQMSPHRIRHSSITHALDVTGDVRKVQGLS 288

Query: 288 GHFRLSTTQIY 298
            H +L T  IY
Sbjct: 289 RHVKLETLMIY 299


>gi|294782725|ref|ZP_06748051.1| integrase/recombinase, phage integrase family [Fusobacterium sp.
           1_1_41FAA]
 gi|294481366|gb|EFG29141.1| integrase/recombinase, phage integrase family [Fusobacterium sp.
           1_1_41FAA]
          Length = 323

 Score =  148 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 51/293 (17%), Positives = 115/293 (39%), Gaps = 25/293 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++    +E G S  T+  Y       +  +          ++I ++   ++R ++S  + 
Sbjct: 52  FIDAKRLE-GCSDKTILYYVSTIETMITKIN---------KSIVEIETEDLRTYLSDYQI 101

Query: 81  QKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                + ++      + SF  +L+      +S +  ++ +K  + +     +++  T+ D
Sbjct: 102 NNNSSKVTIDNIRRILSSFFSWLENENYIIKSPVRRIKKVKAPSIVKETYTDEELETMRD 161

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           NV             R+  ++ +L   G+R+ E + L  ++I   +    + GKG+K R+
Sbjct: 162 NVEA----------LRDLVLIDILASTGMRVGELVKLNIEDINFTERECIVLGKGNKERV 211

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           V      +  +  Y +      + N  L +        L+    +  +R++   LG+   
Sbjct: 212 VYFDARTKIHLKRYLENR---KDNNKALLISLKAPCNRLSIAGVELRLRKIGEKLGI-KK 267

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V   N      +
Sbjct: 268 VHPHKFRRTLATIAIDKGMPIEQVQKLLGHEKIDTTLQYAMVKQSNVKIAHQK 320


>gi|313126748|ref|YP_004037018.1| site-specific recombinase xerd [Halogeometricum borinquense DSM
           11551]
 gi|312293113|gb|ADQ67573.1| site-specific recombinase XerD [Halogeometricum borinquense DSM
           11551]
          Length = 311

 Score =  148 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 69/319 (21%), Positives = 125/319 (39%), Gaps = 36/319 (11%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           + E   + Q++ +++  ++ T   Y    R++  +L     E          +  ++ + 
Sbjct: 1   MSEIDTFQQHVSVKQ--TEGTANRYASAIRRYRDWLDERGVE------FGDANQDDVESH 52

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLK----YLKKRKITTESNILNMRNLKKSNSLP---R 127
           +     +     SLK + +GI  F      Y     ++  S     +  KKS SL     
Sbjct: 53  LLDLADEDYAKGSLKIARAGIAKFYDEMYDYNPVEDVSIGSWTAVKKGSKKSQSLRDDVH 112

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L   +   LVDNV             RN  I+ +L+  G+R  E   +   ++  ++ +
Sbjct: 113 YLTPDEVQQLVDNV-------HSPPKLRNELIIKMLFQTGMRRGELCKVKLHDVNREERS 165

Query: 188 LRIQG-KGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
           +RI   K    R V   PS+   +  + D      L  +    LF   + + + P    R
Sbjct: 166 IRIHADKTHSNRTVYYQPSLSTPLNIWIDAERNGVLTADDSPHLFPTQKAEHIKPNSVSR 225

Query: 246 YIRQLRRYLGL------------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            +R+     G+                T HTLRHSFA   L NG D+R++Q ++GH  + 
Sbjct: 226 IVREAAEEAGIQEVMYHDKGGRPKRKITGHTLRHSFAVAALKNGMDVRTLQKLMGHADIE 285

Query: 294 TTQIYTNVNSKNGGDWMME 312
           TTQ+Y ++   +      +
Sbjct: 286 TTQMYLDLADDDVKTKARQ 304


>gi|159036854|ref|YP_001536107.1| integrase family protein [Salinispora arenicola CNS-205]
 gi|157915689|gb|ABV97116.1| integrase family protein [Salinispora arenicola CNS-205]
          Length = 363

 Score =  148 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 57/159 (35%), Positives = 83/159 (52%), Gaps = 6/159 (3%)

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLN 222
           Y  G+R+SEA  L   ++   +  LR+ GKG++ R VP     ++A+  +     P+   
Sbjct: 210 YATGVRVSEACGLDIADVDPGRRVLRVLGKGNRERTVPYGVPAQRALDAWLRHGRPWLAG 269

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
                 L  G RG  LNP   +  + +     GLP  TT H LRH+ ATHLL  G DLR+
Sbjct: 270 PRSANALLLGARGGRLNPTTARGVVARCAAAAGLP-PTTPHGLRHATATHLLEGGADLRT 328

Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           +Q +LGH  L++TQIYT+V+ +     +   Y Q HP  
Sbjct: 329 VQELLGHTSLASTQIYTHVSVER----LRAAYRQAHPRA 363



 Score = 70.0 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 53/137 (38%), Gaps = 5/137 (3%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
              L   +   L +   ++  +L      S  T+++Y  D    L         +  I+T
Sbjct: 7   TRALHAALPPPLREAVDDFANHLSQVHNRSAHTVRAYVTDVVHLLDHAV-----RAGIRT 61

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
              L+  ++R++++++RT      +L R  +  ++F  +  +           + + +  
Sbjct: 62  PSDLTLAQVRSWLARQRTTGAARSTLARRAAAARTFSAWAHRCGWIPTDVAAPLASPRAQ 121

Query: 123 NSLPRALNEKQALTLVD 139
             LP  L   QA  L++
Sbjct: 122 RELPAVLPVHQAAALLE 138


>gi|44286|emb|CAA37686.1| integrase [Mycobacterium fortuitum]
 gi|226924|prf||1611403A sul3 assocd ORF 2M
          Length = 303

 Score =  148 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 67/314 (21%), Positives = 123/314 (39%), Gaps = 64/314 (20%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLR 281
           SFAT LL +G D+R
Sbjct: 282 SFATALLRSGYDIR 295


>gi|323704109|ref|ZP_08115704.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
 gi|323530929|gb|EGB20873.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
          Length = 290

 Score =  148 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 64/280 (22%), Positives = 115/280 (41%), Gaps = 16/280 (5%)

Query: 46  FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKK 104
           FL F+            ++ ++   +  F+     ++     +    L+ + SF +YL+ 
Sbjct: 1   FLTFMKDEKGILADKVMLKHVNKEIVVDFLDWIEEKRHCCAATRNVPLAALHSFFQYLQY 60

Query: 105 ---RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
                +     IL++   K        L+ +    L++         +     R+ A+L 
Sbjct: 61  QSPENLLEWQRILSIPVKKTEKPSISYLSLEGIRLLLEQ-----PDCSTRNGRRDLALLS 115

Query: 162 LLYGCGLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           L+Y  G R+ E + LTP  +  D   T+++ GKG+K R+VPLL    K +  Y       
Sbjct: 116 LMYDSGARVQEIIDLTPSMVRLDVPCTVKLIGKGNKSRVVPLLDVQVKFLKTYMVEQKLL 175

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTAHTLRHSFATHLL 274
                  PLF   R + L        + +  +         +P   + H LRHS A HLL
Sbjct: 176 EPHANLYPLFSNSRKEKLTRAGVNYILEKYAKQARLKNPTLIPEKLSCHCLRHSKAMHLL 235

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            +G +L  I+ ILGH  +  T++Y   +S+   + + + Y
Sbjct: 236 QSGVNLVYIRDILGHTSVQVTEVYARTDSRQKREAIEKAY 275


>gi|262067772|ref|ZP_06027384.1| integrase/recombinase, phage integrase family [Fusobacterium
           periodonticum ATCC 33693]
 gi|291378498|gb|EFE86016.1| integrase/recombinase, phage integrase family [Fusobacterium
           periodonticum ATCC 33693]
          Length = 329

 Score =  148 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 56/301 (18%), Positives = 115/301 (38%), Gaps = 21/301 (6%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+  + ++   +++  LS  T++ Y      F  FL          +  + ++  ++ +F
Sbjct: 49  LELIKQFVIQKKVQ-NLSDRTIKYYVLTLELFNSFLRN--------KPFQTVTSNDVISF 99

Query: 75  I-SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           + SK    K+   +       + SF  +L++     ++ +  ++ + +     +A +  +
Sbjct: 100 LGSKMYKDKVTSTTANNLRRNLSSFFTFLQEFDFILKNPMARVKKINEVREKKKAFSATE 159

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              +             + + R+ AI  LL   G+R+     L   +I     TL +  K
Sbjct: 160 LAKI----------RKVFTNKRDRAIFELLLHSGIRVGGLCGLKFDDINFSDKTLTVFEK 209

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R V         + EY +           + +      K L     +  IRQ  + 
Sbjct: 210 GRKYRTVYFNEEAEFYLKEYLEERQHLDTKEKHIFVSLLKPYKKLQISGVEIMIRQAGKE 269

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+  +   H  R +FAT     G  +  I+++LGH +L TTQIY +           ++
Sbjct: 270 AGVN-NVHPHRFRRTFATTAWKKGMSIIDIKNLLGHKKLDTTQIYLDETEGLTKAAYNKV 328

Query: 314 Y 314
           +
Sbjct: 329 F 329


>gi|253573841|ref|ZP_04851184.1| DNA integration/recombination/inversion protein [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251847369|gb|EES75374.1| DNA integration/recombination/inversion protein [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 356

 Score =  148 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 71/323 (21%), Positives = 131/323 (40%), Gaps = 39/323 (12%)

Query: 29  RGLSKLTLQSYECDTRQFLIFL-----AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-K 82
           R LS  TL +Y  D   F  +L     A  + + + +  + +L+  EI +F++    Q  
Sbjct: 33  RKLSHTTLLNYCHDYIIFFDWLVAERFAAPSRKDVELSVLEKLTVREIESFLTFLEYQLG 92

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRK-------ITTESNILNMR--NLKKSN---------S 124
               ++ R LS +KS   YL+ +            + +  +    LK+S           
Sbjct: 93  NSKLTINRKLSALKSLFDYLQNKAETADLKPYLERNVMAKIEFNALKESQETIANRIEGK 152

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDAR-------NSAILYLLYGCGLRISEALSLT 177
           + RA + +     V       + E K +          ++AI+ L+ G GLR+SE   + 
Sbjct: 153 ILRADDFELFRQFVAYDFGEQNRENKRLFQFHEFNRERDTAIVSLILGSGLRLSEVAGIN 212

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRGI--- 233
            +++  ++  +R+  KG+K + V      +  +  Y  +          +  LF G    
Sbjct: 213 LEDLDMNKGLVRVIRKGNKEQYVYFSEQAKLDLENYIKIREARYKPEKSETYLFMGAPIG 272

Query: 234 ---RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
              + + L P   ++ I +     G P   T H LRHSFAT       D+  +++ LGH 
Sbjct: 273 RKGKNRRLTPRSIEKLIEKYATAFGKPA-LTVHALRHSFATRYHQENNDVPRLKNQLGHA 331

Query: 291 RLSTTQIYTNVNSKNGGDWMMEI 313
            + TT IYT++  +     +  +
Sbjct: 332 SIQTTMIYTHLTDEEMRKAVNNM 354


>gi|261746151|gb|ACX94072.1| putative integrase [Acinetobacter genomosp. 3]
          Length = 203

 Score =  148 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 17/191 (8%)

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            +   K    LP  L++++ + +V          +   + ++  ++ L+Y  GLRISEA+
Sbjct: 17  KIERPKTPRKLPNVLSKEEIIKIV----------SVLKNLKHRTVISLIYSAGLRISEAV 66

Query: 175 SLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
            +  ++I  ++  + I+  KG K R   L   + K +LEY               +F G 
Sbjct: 67  KMEIRDIDFNRKIINIKDAKGKKDRQTALSLKIEKLLLEYMAFY------KPSKYIFEGA 120

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            G+  +    Q+      +  G+    + H+LRHS+ATHL   G D++ IQ +LGH    
Sbjct: 121 GGEKYSERSIQQVFTIAVKEAGIKKEVSVHSLRHSYATHLHEAGTDIKIIQELLGHESTK 180

Query: 294 TTQIYTNVNSK 304
           TT+IYT+V+ K
Sbjct: 181 TTEIYTHVSRK 191


>gi|256026508|ref|ZP_05440342.1| putative integrase [Fusobacterium sp. D11]
 gi|289764520|ref|ZP_06523898.1| conserved hypothetical protein [Fusobacterium sp. D11]
 gi|289716075|gb|EFD80087.1| conserved hypothetical protein [Fusobacterium sp. D11]
          Length = 329

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 56/299 (18%), Positives = 117/299 (39%), Gaps = 25/299 (8%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ++  + +L    +E G S+ +L+ Y+         +          ++I+ ++  ++R +
Sbjct: 52  IEYLEAFLSAKHVE-GCSRKSLKYYKATIENLFKKID---------KSIKHITTNDLREY 101

Query: 75  ISKRRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +   + +    + ++        SF  +L++     +S +  +  +K    +    +++ 
Sbjct: 102 LDNYQKEGNASKITIDNIRRIFSSFFAWLEEEDYILKSPVRRIHKVKTGTLVKETYSDEA 161

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              + DN              R+ AI+ +L   G+R+ E + L  ++I  +     + GK
Sbjct: 162 MEIMRDNCR----------SLRDLAIIDILASTGMRVGELVKLNIEDIDFEGRECVVFGK 211

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GDK R V      +  +  Y      D   N  L +      K L     +  +RQL R 
Sbjct: 212 GDKERKVYFDARTKIHLHNYLKTRDDD---NSALFVSLLKPYKRLQISGVEIMLRQLGRK 268

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           L +      H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V+  N      +
Sbjct: 269 LNITK-VHPHKFRRTLATKAIDKGMPIEQVQQLLGHQKIDTTLQYAMVSQNNVKISHRK 326


>gi|312872206|ref|ZP_07732279.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2062A-h1]
 gi|311092290|gb|EFQ50661.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2062A-h1]
          Length = 329

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 65/313 (20%), Positives = 127/313 (40%), Gaps = 37/313 (11%)

Query: 8   EIVSFELLKER--QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           E V+ EL  E+   N+L    IE G S+ +L  Y          +          + +R+
Sbjct: 43  EEVNAELTNEQFLNNFLAAKRIE-GCSEKSLTYYRATIEVMTTKIK---------KNVRE 92

Query: 66  LSYTEIRAFISKRRTQKIGDR----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           +   ++R ++++ + +K   +    +++R LS   SF  +L+      +S    +  +K 
Sbjct: 93  METDDLRTYLTEYQHEKNSSKVTVDNIRRILS---SFFSWLEDENYILKSPARRIHKVKA 149

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           + ++     ++    + D+            + R+ A++ +L   G+R+ E + L   +I
Sbjct: 150 ALTIKETYTDEALEKMRDSCE----------EPRDLALIDILASTGMRVGELVLLNRDDI 199

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLN 239
             ++    + GKG K R+V      +  +L Y      D        LF  +R   + L 
Sbjct: 200 NFEERECVVFGKGSKERMVYFDARTKIHLLTYLQGRTDD-----NPALFVSLRAPHERLK 254

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            G  +  +R+L   L +      H  R + AT  +  G  +  +Q +LGH R+ TT  Y 
Sbjct: 255 IGGVECRLRELGNKLDIEK-VHPHKFRRTLATMAIDKGMPIEQLQQLLGHKRIDTTLQYA 313

Query: 300 NVNSKNGGDWMME 312
            V   N      +
Sbjct: 314 MVKQSNVKLAHRK 326


>gi|119869601|ref|YP_939553.1| phage integrase family protein [Mycobacterium sp. KMS]
 gi|119695690|gb|ABL92763.1| phage integrase family protein [Mycobacterium sp. KMS]
          Length = 300

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 62/303 (20%), Positives = 117/303 (38%), Gaps = 16/303 (5%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +PE +  +L     +W   L  E G +  T+++Y      FL + A          T   
Sbjct: 1   MPETL-PDLADLLPSWQLALRSE-GKAPGTIKTYTDGVAAFLRWCAAT-------DTPPA 51

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           ++   ++ FI           +      G++ F +++          ++ ++   +   +
Sbjct: 52  ITKPAVQGFIGDLLDGGAESATAVARFKGVRQFARWMADEGEIDGDPLVGLKRPAQVRKV 111

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
             AL++ Q   L+D               R+ AI+ L+   G+R +E L LT  ++   +
Sbjct: 112 VPALSDDQLRALLDAC-----RGKTLKHRRDEAIVRLMAETGMRAAELLGLTVADVDLTR 166

Query: 186 ST-LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
              +  +GKG K R+VP  P    A+  Y      +  L    PL+ G  GK        
Sbjct: 167 GLAIVRRGKGSKGRVVPFGPQTGAALDRYVRSARRENRLTDHGPLWVGAGGKTFGYHGLD 226

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +++     G+  +  AH LRH+ AT  L  GG  + + ++ G    +    YT  ++ 
Sbjct: 227 GTLKERAAAAGIA-NFHAHRLRHTAATRWLRAGGSEQGLMAVAGWSTRAMIDRYTGASAA 285

Query: 305 NGG 307
              
Sbjct: 286 ERA 288


>gi|209516756|ref|ZP_03265608.1| integrase family protein [Burkholderia sp. H160]
 gi|209502873|gb|EEA02877.1| integrase family protein [Burkholderia sp. H160]
          Length = 416

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 68/311 (21%), Positives = 134/311 (43%), Gaps = 17/311 (5%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           L   V      +   ++  L  ERGL + T++    +  Q L  +           +++Q
Sbjct: 111 LKAPVCAPEAPQLAAYIDFLRTERGLCEETIEGRRHNVAQLLEQMKERGH------SLKQ 164

Query: 66  LSYTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           ++  ++ A + +R   +    R+++    G+++F ++ + R          ++  +    
Sbjct: 165 VTLAQLDALLLERYGERHYAPRTIQGHACGLRAFFQHAESRHWCPPGIAQGIQVPRVYRH 224

Query: 125 --LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             LP + + +    L+     +T+  ++  D R+ AIL LL   GLR  E   L  +++ 
Sbjct: 225 ATLPSSPSWQDVQRLL-----NTTEGSRPTDIRDRAILLLLAVYGLRSGEVRRLRLEDLD 279

Query: 183 DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
            +Q TL I   K  + +  PL  +  +AI+ Y        +   ++ L      +PLN  
Sbjct: 280 WEQETLTITHSKSGRSQTYPLSRTAGQAIIRYLKEVRPQCSCR-EIFLPMRAPLRPLNSS 338

Query: 242 VFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              + + +  + L +P+     H LRH+ AT L++ G  L++I   LGH  L TT+IY  
Sbjct: 339 AIFQLVNRRMKALDIPVLHHGPHALRHACATRLINQGLPLKAIADQLGHRSLETTRIYAK 398

Query: 301 VNSKNGGDWMM 311
           V+     +   
Sbjct: 399 VDLPRLREVAR 409


>gi|557887|gb|AAA50502.1| integrase [Bergeyella zoohelcum]
 gi|1098132|prf||2115270D integrase
          Length = 259

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 59/245 (24%), Positives = 114/245 (46%), Gaps = 20/245 (8%)

Query: 64  RQLSYTEIRAFISKRRTQKIGDR--SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            +L   +I  ++   + +         K ++ G++  LK      ++ +   L++  +K+
Sbjct: 10  TELDPEQIHDYLFYLQKKSKSPSQSYFKHTVYGLRFLLK---SEGLSYD--FLSLPEIKR 64

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              LP  L++++   ++    L           ++  ++ +LYGCGLR  E  +L   ++
Sbjct: 65  EKKLPVVLSKQEVWQMLSGCKL----------LKHKILIGILYGCGLRCMEVRNLRLCDL 114

Query: 182 MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPL 238
             D+  L++ QGKG K R +PL   + + + +Y +    +  L    +     G      
Sbjct: 115 DFDRKQLKVVQGKGKKDRYLPLSEHLIRGLKKYIEAEKPEDYLFGEPRGNRAGGEFDSRY 174

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +    Q  ++Q  +   +    + HTLRHSFATHLL +G D+ SI+++LGH  + TT IY
Sbjct: 175 SQRGVQWAVKQASKTANILKEVSVHTLRHSFATHLLEDGMDILSIKNLLGHESIDTTLIY 234

Query: 299 TNVNS 303
             +  
Sbjct: 235 LQIAQ 239


>gi|332706105|ref|ZP_08426177.1| site-specific recombinase XerD [Lyngbya majuscula 3L]
 gi|332355197|gb|EGJ34665.1| site-specific recombinase XerD [Lyngbya majuscula 3L]
          Length = 341

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 59/311 (18%), Positives = 127/311 (40%), Gaps = 26/311 (8%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           I +  LL+   ++L         +  T+ +Y    +QF+ +                ++ 
Sbjct: 28  ITTANLLEAFADFLDIDVAAGDAAADTVNTYRRQVQQFVNWCDRINLHP------AAVTK 81

Query: 69  TEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK---SNS 124
            +I+ +      T+K    ++   LS +K F +   ++ + T +  L ++  ++     +
Sbjct: 82  DDIKRYRRWMVETKKFKPATVSLKLSVVKRFYQAAVEKGLITINPALGVKPPREKLDPAA 141

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
               L + +   L+  ++   S + K     +  +L ++   G R  E       +++  
Sbjct: 142 RITYLEKPEVEKLLGAIVNDGSLKAKR----DKLLLAIMILEGPRSIELHRANVSDVVKQ 197

Query: 185 QS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIRGK----P 237
                +R++GK + IRIVPL P +   ++ Y +    +  +     PLF  +  +     
Sbjct: 198 GGNLGIRVEGKRN-IRIVPLTPDLADLLMAYLEARAENGEVVKPSSPLFIAVGNRAGGKR 256

Query: 238 LNPGVFQRYIRQLRRYLGLP----LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           ++    +  +        L      + +AH+LRH+  T  L +G +LR +Q +LGH    
Sbjct: 257 ISRRGIRLVVDSYLEQTNLKQTPGRTISAHSLRHTAGTLALRSGAELRQVQDLLGHADPR 316

Query: 294 TTQIYTNVNSK 304
           TT IY +V  +
Sbjct: 317 TTCIYAHVADR 327


>gi|154496779|ref|ZP_02035475.1| hypothetical protein BACCAP_01072 [Bacteroides capillosus ATCC
           29799]
 gi|150274031|gb|EDN01131.1| hypothetical protein BACCAP_01072 [Bacteroides capillosus ATCC
           29799]
          Length = 349

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 58/331 (17%), Positives = 127/331 (38%), Gaps = 46/331 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L   +  R L   T+ SYE   R F  ++     ++  ++   +++   IR +I  
Sbjct: 31  IDEYLYYCQS-RRLRPKTMASYEQTLRLFERWIR----DQEGLERPSEITEQNIRHYICD 85

Query: 78  RRTQK-------------------------IGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
            + +                          I   ++   L  +++F ++ +      ++ 
Sbjct: 86  LQERGKYSFYICDRAKETNLPERRRDYRTPISVTTINNYLRNLRAFFRWYE-ECSGGKNP 144

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           +  ++ L         L + +   L+D++      ++ + + R+  I+ L+   G+R+ E
Sbjct: 145 MAKVKLLSNERKPREYLEDAEVKKLLDSL-----DKSYFSENRDRTIILLILDTGMRLGE 199

Query: 173 ALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
            L L+ + I   +  + I     KG K R V       KA+ ++       +  +   P 
Sbjct: 200 CLKLSMEYIDMHERVISIPAELTKGRKARCVYFSIKTAKALQQWLRFKDRYVESSYIFP- 258

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
                G PL    F+   R+     G+    + H LR++FA   +  G D+ ++  ILGH
Sbjct: 259 -TKESGMPLELRSFESNFRRYVMRSGIQKEISPHALRNNFAKRCILAGMDIYTLSRILGH 317

Query: 290 FRLSTTQI-YTNVNSKNGGDWMMEIYDQTHP 319
             ++ T+  Y ++  ++    +   Y    P
Sbjct: 318 SSVTVTEKAYLDLTDQD----IKRCYQNYSP 344


>gi|145594876|ref|YP_001159173.1| phage integrase family protein [Salinispora tropica CNB-440]
 gi|145304213|gb|ABP54795.1| phage integrase family protein [Salinispora tropica CNB-440]
          Length = 332

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 64/290 (22%), Positives = 108/290 (37%), Gaps = 30/290 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + WL N    R LS+ T  +Y  D   +L + A    + +      + ++  + A+    
Sbjct: 27  EAWLAN----RRLSEHTRDAYRRDVGGWLDWCADADLDPL------RATFLHVNAYARWL 76

Query: 79  RTQKIG-------DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA--L 129
            +             ++ R LS + S+  +L   +    + +                 L
Sbjct: 77  ESTPTARSGKPPTPATVARKLSALSSWYDFLVTLRAVGTNPVTGADRPHVDRDHSATIGL 136

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-- 187
             ++   L    L      T    ARN A + LL   GLR+ E +SL   ++  ++    
Sbjct: 137 TPEEVDAL----LTVADSATGPTAARNRAAVALLVDLGLRVGELVSLDVADLGTERGHHS 192

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIRGKPLNPGVFQ 244
           +R  GKG + R   L P    A+  Y         +    +  PL     G  L+     
Sbjct: 193 VRFTGKGGRARRRALTPGASAAVQAYLTRRARTEGVPVHRLTGPLLVTSTGARLDRHSVF 252

Query: 245 RYIRQLRRYLGLP--LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           R +R+L R   +P     + H+LRHSFAT   + G  L  +Q  +GH   
Sbjct: 253 RLVRRLAREASIPGWARLSPHSLRHSFATTARAEGVPLEDVQDAMGHADP 302


>gi|304436275|ref|ZP_07396258.1| phage integrase family integrase/recombinase [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304370732|gb|EFM24374.1| phage integrase family integrase/recombinase [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 328

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 57/296 (19%), Positives = 122/296 (41%), Gaps = 29/296 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI-SKR 78
            +++   IE G S  TL  YE   R  L  +          + +   +  ++R+++ S +
Sbjct: 56  KFIEAKRIE-GCSSKTLHYYEKSIRTMLAHVQ---------KEVVHTTTEDLRSYLTSYQ 105

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +   ++      + SF  +L+      +S +  +  +K + ++    ++++   + 
Sbjct: 106 ERGGLSRVTVDNVRRILSSFFAWLEDEDYIVKSPVRRIHRVKTAENIKATYSDEELEAMR 165

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D+            ++R+ A++ +L   G+R+ E + L   ++  ++    + GKG+K R
Sbjct: 166 DSC----------HESRDLAMIDMLASTGMRVGEMVRLNRSDVDFNERECVVLGKGNKER 215

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP--LNPGVFQRYIRQLRRYLGL 256
           IV      +  +  Y      +   + +  LF G+R     L+    +  +R L R +G+
Sbjct: 216 IVYFDARTKIHLQAYL-----ESRTDGEAALFVGLRSPRSRLSISGIESRLRTLGRRIGM 270

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                 H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V   N      +
Sbjct: 271 EK-VHPHKFRRTLATRAIDKGMPIEQLQQLLGHKRIDTTLHYAMVKQSNVKAAHRK 325


>gi|256377530|ref|YP_003101190.1| integrase family protein [Actinosynnema mirum DSM 43827]
 gi|255921833|gb|ACU37344.1| integrase family protein [Actinosynnema mirum DSM 43827]
          Length = 324

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 66/309 (21%), Positives = 119/309 (38%), Gaps = 12/309 (3%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ++L  ++ + Q     +  S  T  +Y  D       L      ++    +  L+   +R
Sbjct: 2   DVLAAQEAFFQARRPRKD-SPHTTAAYRRDLAGVNALLGEVVGREVGELRVEDLTGAHLR 60

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN-E 131
           +             S+ R+ S    FL +L    +   + +  +   K    +P+ L  E
Sbjct: 61  SAFGVFADSH-AKSSVLRAWSTWNQFLTFLVAEDLVPGNPMGAVARPKTPPLVPKPLRGE 119

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLR 189
                L+                R+  +L L    GLR  E  +LT  +++    +  L 
Sbjct: 120 DTPERLLAAAAEGARKARDPWPERDVLVLALGLVAGLRSVEMRTLTLASVVGRSGERRLH 179

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRY 246
           + GKG++ R VP+ P++ + + EY   C         +    L R   G+P+  G  +  
Sbjct: 180 VLGKGNRDRSVPIEPAMERVVDEYLASCRKRFPQGRFDRGSALLRDRHGEPIGRGGLEYL 239

Query: 247 IRQLRRYLGLPLST----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +R   R+ GL          H LRH+FAT L  +G     I ++LGH  L+T+Q Y    
Sbjct: 240 VRSCFRWAGLHDRVPSGANLHALRHTFATRLAEDGATASEIMALLGHASLATSQNYIEAT 299

Query: 303 SKNGGDWMM 311
           ++     + 
Sbjct: 300 AREQRSAVA 308


>gi|257093399|ref|YP_003167040.1| integrase family protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257045923|gb|ACV35111.1| integrase family protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 305

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 67/322 (20%), Positives = 129/322 (40%), Gaps = 41/322 (12%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ME  ++  + + +  K  +  L++L++ +GL   T+++Y    R+   +           
Sbjct: 1   ME--DMSAVAATDFEKNDELHLKHLKL-KGLQPKTIEAYSRAIRRVGDYFDHQ------- 50

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             I  LS  ++  + +  R +     S+K  L G+K   +++ K+     S    +    
Sbjct: 51  --IGDLSEADLVDYFTDLR-ETHSWSSVKLDLYGLKFHYEHVLKKPWVAPS----LIKPP 103

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +S  LP  +  ++   +     +                 + LY  GLR+ E L LT  +
Sbjct: 104 RSQRLPDIVTVEETERIFLATQV----------LSYRVFFFTLYSLGLRLGEGLRLTVGD 153

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR------ 234
           I      + I+        +  LP+    +L  +     +  L     LF          
Sbjct: 154 IDGACERVHIRDAKGNKDRLVPLPTATHQLLRRFWQRHRNPVL-----LFPNRHGGLAGA 208

Query: 235 ---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
                PL+ G  Q+ +R +    G+    + H+LRH++ATHL+  G +L  +Q ILGH  
Sbjct: 209 RAARTPLDRGGVQKALRAVVESCGVKKHISPHSLRHAYATHLVEAGVELTEVQDILGHHS 268

Query: 292 LSTTQIYTNVNSKNGGDWMMEI 313
           + TT  YT++  ++    +  I
Sbjct: 269 ILTTVRYTHLTDRSRHHAIDRI 290


>gi|302874927|ref|YP_003843560.1| integrase family protein [Clostridium cellulovorans 743B]
 gi|307690455|ref|ZP_07632901.1| integrase family protein [Clostridium cellulovorans 743B]
 gi|302577784|gb|ADL51796.1| integrase family protein [Clostridium cellulovorans 743B]
          Length = 276

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 70/300 (23%), Positives = 125/300 (41%), Gaps = 25/300 (8%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           + +   W+  +  E   S  T++SY+ D  QF+ F+    EE         ++  +I  +
Sbjct: 1   MTDLDKWIIKMREED-KSINTIESYKGDVIQFMNFIEKEPEE---------ITKEDILKY 50

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
                  ++  +S  R    + SF  +L+      +   + ++  K  N     L E  A
Sbjct: 51  KEYLALNEMSVKSANRKYISVNSFFSFLQTE--LEKDVQMRIKKDKIQNQ--EYLEEMLA 106

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
               +N++   S    + D R  AI   L+  G+RISEAL L   +I +D   + I+GKG
Sbjct: 107 KEDFENLVQVAS---SYNDYRAVAIFNTLFYTGMRISEALQLKTTDISND--VVVIKGKG 161

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K R V +   ++  +  Y               LF G +G P+N       I++     
Sbjct: 162 SKHRNVFIPQKLKSILNTYMIYRLPC----KSDALFTGKKG-PINRKTVDAIIKKYAAIA 216

Query: 255 GLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           G+ +    AH  RH +   L+  G  + ++  + GH  ++TT+IYT        D + ++
Sbjct: 217 GISMTKAHAHNFRHLYCLTLIEKGLTIDTVADLAGHSNINTTRIYTRKTKNQLLDTINDL 276


>gi|38637709|ref|NP_942683.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527047|gb|AAP85797.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 284

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 99/265 (37%), Gaps = 20/265 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ + + L  +R  S  T+ SY    R  L F      +         ++   + AF++ 
Sbjct: 12  QRFFTERLMQQRQASPHTISSYRDTFRLLLRFAYKRLHKPPDHLAFEDINAPLVTAFLND 71

Query: 78  R-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI---LNMRNLKKSNSLPRALNEKQ 133
             +T+ I  R+    L+ I+SF +Y         + I   L+M N +    L   L   +
Sbjct: 72  LEKTRAISVRTRNLRLTAIRSFFRYAAFETPAYSAQIQRVLSMPNKRYDRRLIHFLTRPE 131

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLRIQG 192
              L+         +  W   R+ A+L L    GLR+SE   LT +++       + + G
Sbjct: 132 VKALL-----AAPDKRTWCGRRDHALLRLGVETGLRVSEMTGLTREDVTLGAGAHIDVMG 186

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R+ P        +  +      +        LF  +RG  L+P   QR +++   
Sbjct: 187 KGRKQRVTPFSKETAAILKAW----MKEPRTPNSDALFPSVRGGHLSPDAVQRLLKKYAT 242

Query: 253 YLGL------PLSTTAHTLRHSFAT 271
              +          T H LRH    
Sbjct: 243 QAAMGCPSLRKKRVTPHVLRHYMPF 267


>gi|254785845|ref|YP_003073274.1| integron integrase [Teredinibacter turnerae T7901]
 gi|237686300|gb|ACR13564.1| integron integrase [Teredinibacter turnerae T7901]
          Length = 355

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 64/338 (18%), Positives = 123/338 (36%), Gaps = 70/338 (20%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           + LPE  + + + + + +++     R ++  T ++Y      F+ F              
Sbjct: 6   HRLPEK-TVKFMDKLREFMRA----RHMAYRTEKTYCNWIADFIRFHNR--------THP 52

Query: 64  RQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYL--KKRKITTESNILNMRNLK 120
            +L    I +++S    ++     + K +L+ +    +            +         
Sbjct: 53  SELEQGSIDSYLSHLAVRRCYSINTQKTALNALVFLYEKFLGVPVGELAFTPST------ 106

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +   LP   + ++AL ++             +      I  L+YG GLR+ EA+ L  Q+
Sbjct: 107 RPRILPVVFSHREALKVLSE-----------LSGIYRIIGSLMYGSGLRVMEAVRLRLQD 155

Query: 181 IMDDQSTLRIQGKGD-----------------KIRIVPLLPSVRKAI------------- 210
           +  +Q  + ++                       R   L    +  +             
Sbjct: 156 VDFEQQCIMVREAKGMKSRRTLLPKSLIPGLQAQRTFVLSLHAKDLLEGFGEVYLPFALA 215

Query: 211 -------LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
                   E      F  N+    P  + +R   +     QR +++      +    + H
Sbjct: 216 KKYPNAPKEPGWQYLFPANMRALDPRSQVVRRHHIGEQQVQRQVKKAIVAAAIHKKASCH 275

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T RH FAT+LL +G D+R+IQ +LGH  LSTTQIYT+V
Sbjct: 276 TFRHCFATNLLRSGADIRNIQELLGHKDLSTTQIYTHV 313


>gi|331000358|ref|ZP_08324039.1| site-specific recombinase, phage integrase family [Parasutterella
           excrementihominis YIT 11859]
 gi|329572154|gb|EGG53819.1| site-specific recombinase, phage integrase family [Parasutterella
           excrementihominis YIT 11859]
          Length = 320

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 64/285 (22%), Positives = 115/285 (40%), Gaps = 11/285 (3%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
            SY C   +   F  F+  + +     + +    +  F++ +       R+    LS +K
Sbjct: 37  DSYRCMKSKLNKFARFFGYKGLVDCDWKSMQPNHVTVFLTAQSWG--SARTYNCYLSALK 94

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
           S      + K     +   +++LK+   + RAL+ +   +     L+ +         RN
Sbjct: 95  SVALNAWRNKQIDLDHFQRIKSLKQ-RRVFRALSGRAISSEESASLIKSLEANSLRTVRN 153

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
            AI YL+ GCGLR +E   L  + +     + +I GKG+K R +     V   +  +++ 
Sbjct: 154 RAIFYLMLGCGLRRAEVCELRVKQVSFKNRSAKIIGKGNKERTIYFPDVVLDVLKTWFEF 213

Query: 217 CPFDLNLNIQLPLF-------RGIRGKPLNPGVFQRYIRQLRRYL-GLPLSTTAHTLRHS 268
              + N      +F       R      L+P    R I +L      L    T H LR +
Sbjct: 214 RQLNKNEIDAGFVFGRIDNKLRLYLDTALDPSSVSRIIEKLVTETENLDSRLTPHDLRRT 273

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           FAT L+S   D+  +Q ++GH  ++TT  Y   + +N      + 
Sbjct: 274 FATRLISKNVDIVEVQKLMGHASVATTGNYVRKDEENLRKAAEKA 318


>gi|254303662|ref|ZP_04971020.1| possible bacteriophage integrase/recombinase [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148323854|gb|EDK89104.1| possible bacteriophage integrase/recombinase [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 329

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 56/299 (18%), Positives = 117/299 (39%), Gaps = 25/299 (8%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ++  + +L    +E G S+ +L+ Y+         +          ++I+ ++  ++R +
Sbjct: 52  IEYLEAFLSAKHVE-GCSRKSLKYYKATIENLFKKID---------KSIKHITTNDLREY 101

Query: 75  ISKRRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +   + +    + ++        SF  +L++     +S +  +  +K    +    +++ 
Sbjct: 102 LDNYQKEGNASKITIDNIRRIFSSFFAWLEEEDHILKSPVRRIHKVKTGTVVKETYSDEA 161

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              + DN              R+ AI+ +L   G+R+ E + L  ++I  +     + GK
Sbjct: 162 MEIMRDNCK----------SLRDLAIIDMLASTGMRVGELVKLNIEDIDFEGRECVVFGK 211

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GDK R V      +  +  Y      D   N  L +      K L     +  +RQL R 
Sbjct: 212 GDKERKVYFDARTKIHLHNYLKTRDDD---NSALFVSLLKPHKRLQISGVEIMLRQLGRK 268

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           L +      H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V+  N      +
Sbjct: 269 LNITK-VHPHKFRRTLATKAIDKGMPIEQVQQLLGHQKIDTTLQYAMVSQNNVKISHRK 326


>gi|34762210|ref|ZP_00143217.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27888171|gb|EAA25230.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 348

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 53/295 (17%), Positives = 118/295 (40%), Gaps = 34/295 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK----IGD 85
            LS  +L  Y+     F +F+          ++  +++  +IR +++  R +     +  
Sbjct: 74  NLSDKSLLYYKNSLELFSLFVK---------KSFLKVTTDDIRLYLAVEREKNQQKAVSI 124

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            +++R L+   SF  +L + +  + + +  ++ +K   +   A  + +   L        
Sbjct: 125 DNIRRILN---SFFSFLNEEEYISNNPVKRIKKVKGQKTEKTAFTQLELEKLRMACENSL 181

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
                       AI+ +L    +R +E  ++  ++I  +++ ++I  KG+K  I  +   
Sbjct: 182 E----------KAIMEVLISSAIRATELANIKIRDIDFEKNEIKIVRKGNKEGIAFMSTI 231

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-------LNPGVFQRYIRQLRRYLGLPL 258
              AI +Y           + +      +          +    F+R ++ +     +  
Sbjct: 232 AALAIKKYISERGNYNTPYLWVVDGLMYKCYKNQILGSKIETEGFRRVLKSIATRAKVE- 290

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +   H  R +FAT  L  G D+  IQ +LGH  ++TT IY NV+  +  +    I
Sbjct: 291 NVHPHRFRRTFATMALKKGMDVEEIQQVLGHQNINTTMIYVNVDKSSVKEKYKNI 345


>gi|312793729|ref|YP_004026652.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180869|gb|ADQ41039.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 319

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 66/312 (21%), Positives = 120/312 (38%), Gaps = 29/312 (9%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           + +     Q +L   + + G S LT++ YE   R F                       +
Sbjct: 11  NSDWEDALQLFLSYKKAQ-GRSDLTIRDYEIHIRAFFKRYPDCFN-----------DTQK 58

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +R  + +  +Q +   +    +  +K+FL +  +  I   + I   +  K  + +     
Sbjct: 59  LRKCLIEYLSQPMKPVTYNLRMKNLKAFLNWCVEEGIIPTNPIAKFKPRKTDDRI----- 113

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             +        LL       +   R+ A++ L    G+R  EA SL   +       + I
Sbjct: 114 -VEIDIETLQKLLQLPDRKTFAGLRDYALMLLTLDTGIRPKEAFSLLKDHFDFKNMQVVI 172

Query: 191 QG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
                K    R++P+ P    AI +           +  +P+F  + GKPLN   +   +
Sbjct: 173 PSDVAKTRVSRVLPISPVTANAIKKLISSRHPQ--WDDSVPVFCSVTGKPLNRYRWNERM 230

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           R+  + LG+      + LRH FA   L NGG   S+Q I+GH  L  T+ Y +   K+  
Sbjct: 231 REYSKQLGV--KIKPYDLRHMFALLYLKNGGYELSLQKIMGHTTLEMTKKYVHFTQKD-- 286

Query: 308 DWMMEIYDQTHP 319
             + +I+ +  P
Sbjct: 287 --LQDIHAKATP 296


>gi|307243971|ref|ZP_07526092.1| phage integrase, N-terminal SAM domain protein [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492621|gb|EFM64653.1| phage integrase, N-terminal SAM domain protein [Peptostreptococcus
           stomatis DSM 17678]
          Length = 327

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 60/298 (20%), Positives = 120/298 (40%), Gaps = 29/298 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L    IE G S+ +L+ Y+      L  L          + ++Q+   +IR ++++
Sbjct: 53  VELFLSAKRIE-GCSEKSLKYYKTMIETMLFQLQ---------KDVKQIVTDDIRTYLTE 102

Query: 78  RRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            +  K   R ++      + SF  +L+      +S +  +  +K   S+    +++    
Sbjct: 103 YQNSKHSSRVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVKTGTSVKETYSDEALEL 162

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           + D+            + R+ A++ +    G+R+ E + L  ++I  ++    + GKGDK
Sbjct: 163 MRDSC----------TELRDLAMIDMFASTGMRVGEMVLLNREDINFNERECVVFGKGDK 212

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYL 254
            RIV      +  +  Y          +    LF  ++     +  G  +  +R L   L
Sbjct: 213 ERIVYFDARTKIHLQNYLQSR-----KDNNPALFVSLQSPHNRMKIGGIEVRLRNLGNRL 267

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           GL +    H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V   N      +
Sbjct: 268 GL-VKVHPHKFRRTLATVAIDKGMPIEQVQQLLGHRRIDTTLQYAMVKQSNVKIAHRK 324


>gi|257074479|ref|YP_003162877.1| integrase [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257048700|gb|ACV37886.1| integrase family protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 322

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 68/282 (24%), Positives = 118/282 (41%), Gaps = 29/282 (10%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           K T ++YE     F+ F      E+      R +    + A+      + +   +++  L
Sbjct: 41  KATRRAYENALGDFMKFTGIVKPEE-----FRTVIRAHVIAWRDDLVQRALSGMTVRHRL 95

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSN---SLPRALNEKQALTLVDNVLLHTSHET 149
           + + S  + L ++   T + +  ++     +     P AL + QA  L+D          
Sbjct: 96  AALSSLFESLCEKNAVTHNPVKGVKRPPVESYEGKTP-ALGDHQARKLLD-----APDGA 149

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGDKIRIVPLLPSV 206
                R+ AIL  L    LR  E   LT ++   ++     L++ GKG KIR VPL P+ 
Sbjct: 150 SLKGKRDRAILATLLYHALRRDELCRLTVKDYKHERRGVPHLKVFGKGGKIRYVPLHPAA 209

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGK--------PLNPGVFQRYIRQLRRYLGLPL 258
              I +Y ++       +    LFR +R           + P    + +RQ    LG   
Sbjct: 210 GGLIGDYLEIAGH--GADDAGALFRPLRNNCTTGGLERAITPDAVYKLVRQYSTALG--F 265

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +  AH LR + AT+ L +  D+  +Q  LGH  ++TT+IY +
Sbjct: 266 AIGAHALRATAATNALDHQADIAKVQEWLGHANIATTRIYDH 307


>gi|303258389|ref|ZP_07344392.1| integrase/recombinase [Burkholderiales bacterium 1_1_47]
 gi|302858835|gb|EFL81923.1| integrase/recombinase [Burkholderiales bacterium 1_1_47]
          Length = 320

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 63/289 (21%), Positives = 124/289 (42%), Gaps = 19/289 (6%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
            SY C   +   F  F+  + +     + +    +  F++ +       R+    LS +K
Sbjct: 37  DSYRCMKSKLNKFARFFGYKGLVDCDWKSMQPNHVTVFLTAQSWG--SARTYNCYLSALK 94

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSN--SLP--RALNEKQALTLVDNVLLHTSHETKWI 152
           S      + K     +   +++LK+      P  RA++ +++ +L+ ++  ++    +  
Sbjct: 95  SVALNAWRNKQIDLDHFQRIKSLKQRRVFRAPSGRAISSEESASLIKSLEANSLRTVR-- 152

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
              N AI YL+ GCGLR +E   L  + +     + +I GKG+K R +    +V   +  
Sbjct: 153 ---NRAIFYLMLGCGLRRAEVCELKVKQVSLKSRSAKIIGKGNKERNIYFPDAVLDVLKI 209

Query: 213 YYDLCPFDLNLNIQLPLF-------RGIRGKPLNPGVFQRYIRQLRRYL-GLPLSTTAHT 264
           +++    + N +    +F       R      L+P    R I++L      L    T H 
Sbjct: 210 WFEFRQLNKNESDAGFVFGRIDNKQRLHLDIALDPSSVTRIIKKLVSETENLEGRLTPHD 269

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           LR +FAT L+S   D+  +Q ++GH  ++TT  Y   + +N      ++
Sbjct: 270 LRRTFATRLISKNVDIVEVQKLMGHASVATTGNYVRKDEENLRMAAEKV 318


>gi|296165947|ref|ZP_06848413.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295898700|gb|EFG78240.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 349

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 60/327 (18%), Positives = 121/327 (37%), Gaps = 47/327 (14%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                +L +L   RG S  T+++Y  D      FL         +       + + +   
Sbjct: 20  DAVNAFLNHLAG-RGFSAATVRAYAFDVANLSRFLVQQAVGLAAVDAPLVFDWIDWQGVR 78

Query: 76  -------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN---------- 118
                    R +      ++ R ++ +++  +YL    + T++ + + R           
Sbjct: 79  RTDQPTGGHRSSTPPAASTVNRRVAAVRALFEYLVMTGVCTDNPVPSPRRGQGLRQSQRG 138

Query: 119 ----------------LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
                           +++   LP +L+       +  +  H          R+ A++ +
Sbjct: 139 LLGHLGPGRARSGGRLVRQPQRLPESLSTNDVDAFLATLATH----------RDRAMVLV 188

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDL 221
           +   GLR +EA  L   ++   +  LR+ GKG K R VP+  +    +  Y     P  L
Sbjct: 189 MLLGGLRSAEARGLLLADVDMGRRRLRVIGKGGKERHVPVDAAFFTELAAYLRWERPPGL 248

Query: 222 NLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
                  + RG     P++    +   R+ R   G       H LRH++ T L + G DL
Sbjct: 249 ATPQCFVVLRGPTTGAPVSEAGLRSLFRRHRETSGATR-VRPHRLRHTYGTELSAAGIDL 307

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGG 307
            ++++++GH    TT  Y +++ +   
Sbjct: 308 LALRALMGHVSPETTARYVHLSIEQLA 334


>gi|229521999|ref|ZP_04411416.1| site-specific recombinase XerD [Vibrio cholerae TM 11079-80]
 gi|229340924|gb|EEO05929.1| site-specific recombinase XerD [Vibrio cholerae TM 11079-80]
          Length = 348

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 72/342 (21%), Positives = 132/342 (38%), Gaps = 47/342 (13%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+ +++P             +L         S  T++ Y     Q   FL+        +
Sbjct: 10  MKTSSMP-------TDLIDQFLTWKGENENCSARTVKKYRGLLSQLDKFLSGNFA-AAEL 61

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           +T+ Q S                   S K +++ I+ F  +L KR+I   +   ++   +
Sbjct: 62  KTLEQFSG-------GWLHRAGYSAASRKVAVAAIRGFYSFLAKRRIVARNPAADLVYPR 114

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               LPR +  K A  L+        + T     R+SA+L LL GCG R++    L    
Sbjct: 115 MGRRLPRFMGLKSAEALL-----FQPNLTSLSGVRDSAMLALLIGCGFRVAGLCGLNESQ 169

Query: 181 IMD------DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF----DLNLNIQLPLF 230
           ++       ++  +R   KG++ R+VP+       +  Y           +  N    LF
Sbjct: 170 LIWYQYGEVERLAIRTLEKGERERLVPVPLEAMLLVQAYLGHHDLKHVDRVLDNGDQVLF 229

Query: 231 RGIRGK------------PLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNG 277
             +R +             L+     R I++     G+P   + AH LRH F T L  + 
Sbjct: 230 VNLRNRHVPEWEHRGELRRLSTRAVDRMIKKYAIAAGVPEDQSHAHALRHLFGTELAESD 289

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
                IQ+++GH    T++IY++++ +     M  + D+ +P
Sbjct: 290 SSTLQIQALMGHADPKTSEIYSHISMR----KMTHVLDKGNP 327


>gi|260588402|ref|ZP_05854315.1| site-specific recombinase, phage integrase family [Blautia hansenii
           DSM 20583]
 gi|260541276|gb|EEX21845.1| site-specific recombinase, phage integrase family [Blautia hansenii
           DSM 20583]
          Length = 337

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 56/296 (18%), Positives = 111/296 (37%), Gaps = 25/296 (8%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-----KIGDRSLK 89
           T + Y  D   FL  +A     +I    +  ++ + I  + +KR  +      I + ++ 
Sbjct: 40  TKRKYLGDVEMFLNSIADGMGVEIAELKLENITTSVINRYFTKRNQELISGKPISNATIA 99

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKS----NSLPRALNEKQALTLVDN----- 140
             +S + +F  +L + +  +E+ +   + +K+           L E +   ++ N     
Sbjct: 100 TQISSLHNFFDFLYRFEYISENPME--KAIKRPSVKLKDEISYLTEDEISIIIKNLNEGV 157

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
              H     K    R+  +  +    G R+S    +   +I  +   +    K DK    
Sbjct: 158 GSKHARTSQKKYQDRDRLLFLIPLSTGCRVSALSEINVSDIDFENCLIHTIDKRDKEFEY 217

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR---GKPLNPGVFQRYIRQLRRYLGLP 257
            +   +   I  + D       +     LF   +    K L  G  Q+ I +     G+ 
Sbjct: 218 EVTKELMDIIRRWCDRRKLIPGIEATDALFVSKKSDGCKRLGVGAIQKIIAKYSE--GID 275

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              + H LR +F T++    GD+     +LGH   +TT+ Y +VN +     M E+
Sbjct: 276 RKISPHELRRTFGTNVYRMKGDIYLTSELLGHSSPTTTKRYASVNKQE----MKEV 327


>gi|312875769|ref|ZP_07735763.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2053A-b]
 gi|311088704|gb|EFQ47154.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2053A-b]
          Length = 329

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 61/301 (20%), Positives = 119/301 (39%), Gaps = 35/301 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             N+L    IE G S+ +L  Y          +          + +R++   +IR ++++
Sbjct: 55  LNNFLSAKRIE-GCSEKSLTYYRATIEVMTTKIK---------KNVREMETDDIRTYLTE 104

Query: 78  RRTQKIGDR----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            + +K   +    +++R LS   SF  +L+      +S    +  +K + ++     ++ 
Sbjct: 105 YQQEKNSSKVTVDNIRRILS---SFFSWLEDENYILKSPARRIHKVKAALTIKETYTDEA 161

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              + D+            + R+ A++ +L   G+R+ E + L   +I  ++    + GK
Sbjct: 162 LEKMRDSCE----------EPRDLALIDILTSTGMRVGELVLLNRDDINFEERECVVFGK 211

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR 251
           G K R+V      +  +L Y      D        LF  +R     L  G  +  +R+L 
Sbjct: 212 GSKERMVYFDARTKIHLLTYLQGRTDD-----NPALFVSLRAPHDRLKIGGVECRLRELG 266

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             L +      H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V   N      
Sbjct: 267 NKLDIEK-VHPHKFRRTLATMAIDKGMPIEQLQQLLGHKRIDTTLQYAMVKQSNVKLAHR 325

Query: 312 E 312
           +
Sbjct: 326 K 326


>gi|25986886|gb|AAN16071.1| site-specific recombinase [Pseudomonas stutzeri]
          Length = 299

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 66/304 (21%), Positives = 118/304 (38%), Gaps = 60/304 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           +  S  T + Y    ++F+ F  +   +++  Q        EI AF+++    + +   +
Sbjct: 18  KHYSIRTERVYCEWVKRFIRFHQYRHPQEMGAQ--------EIEAFLTELAVARNVSAST 69

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++LS +    K +          + ++   KK   LP  L  ++  + +  +      
Sbjct: 70  QNQALSALLFLYKEVLS---IDLPWLADVVRAKKPQRLPVVLTVEEVRSALAQLESEP-- 124

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
                      +  LLYG G+R+ EAL L  +++   +  + I+ GKG K R+  L  S+
Sbjct: 125 ---------WLVCSLLYGTGMRLMEALRLRVKDVDFSRHEILIRDGKGMKDRVTMLPRSL 175

Query: 207 RKAIL------------------------------------EYYDLCPFDLNLNIQLPLF 230
            + +                                     E+     F  +     P  
Sbjct: 176 VQPLRRHLAVVKAIHDSEREQGRGDVWLPFALARKYPKAPKEWGWQYVFPASGLSVDPRS 235

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +R   L+    QR  ++  R  G+    T HTLRHSFATHLL +G D+R+ Q +LGH 
Sbjct: 236 GAVRRHHLDEKRIQRAFKRAIRGAGIVKPATPHTLRHSFATHLLESGQDIRTDQELLGHS 295

Query: 291 RLST 294
            + T
Sbjct: 296 DVKT 299


>gi|259501397|ref|ZP_05744299.1| phage integrase family integrase/recombinase [Lactobacillus iners
           DSM 13335]
 gi|302190882|ref|ZP_07267136.1| phage integrase, N-terminal SAM domain protein [Lactobacillus iners
           AB-1]
 gi|259167201|gb|EEW51696.1| phage integrase family integrase/recombinase [Lactobacillus iners
           DSM 13335]
          Length = 329

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 61/301 (20%), Positives = 120/301 (39%), Gaps = 35/301 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             N+L    IE G S+ +L  Y          +          + +R++   +IR ++++
Sbjct: 55  LNNFLSAKRIE-GCSEKSLTYYRATIEVMTTKIK---------KNVREMETDDIRTYLTE 104

Query: 78  RRTQKIGDR----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            + +K   +    +++R LS   SF  +L+      +S    +  +K + ++     ++ 
Sbjct: 105 YQQEKNSSKVTVDNIRRILS---SFFSWLEDENYILKSPARRIHKVKAALTIKETYTDEA 161

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              + D+            + R+ A++ +L   G+R+ E + L   +I  ++    + GK
Sbjct: 162 LEKMRDSCE----------EPRDLALIDILASTGMRVGELVLLNRDDINFEERECVVFGK 211

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR 251
           G K R+V      +  +L Y      D        LF  +R   + L  G  +  +R+L 
Sbjct: 212 GSKERMVYFDARTKIHLLTYLQGRTDD-----NPALFVSLRAPHERLKIGGVECRLRELG 266

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             L +      H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V   N      
Sbjct: 267 SKLDIEK-VHPHKFRRTLATMAIDKGMPIEQLQQLLGHKRIDTTLQYAMVKQSNVKLAHR 325

Query: 312 E 312
           +
Sbjct: 326 K 326


>gi|322381501|ref|ZP_08055481.1| site-specific tyrosine recombinase XerC-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154543|gb|EFX46839.1| site-specific tyrosine recombinase XerC-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 314

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 68/300 (22%), Positives = 123/300 (41%), Gaps = 20/300 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL--AFYTEEKITIQTIRQLSYTEIRAFI 75
            Q+++ +L I   L+  TL+ Y  D + F+ +   A Y EE I  + I  ++   +  + 
Sbjct: 28  VQDFIHSLTIHEDLNPKTLKEYASDLKHFIGWFETANYQEENIVFR-IEDVATPTLTRYQ 86

Query: 76  -SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
            + ++  ++   ++ R L  +K F ++     I        ++ + +    PR + +K+ 
Sbjct: 87  EASQKVMELKPATINRRLITLKRFFEWAASNSIIRRDPSKPVKLVPEEKVSPRQMTDKEE 146

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+       S        R+  IL ++   GLR  E   L P +I   + T+R  GK 
Sbjct: 147 DALIAAAEHGGS-------LRDQTILIVMLHTGLRTMEVCDLAPGDIQIGKLTVR-SGKR 198

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRY 253
           +K R VPL  + R A+ +Y    P          LF   +    L+    +  I++  + 
Sbjct: 199 NKQREVPLNATCRSALEKYLVYLPP-----GSPYLFPSEKTGDRLSERALRHLIQKYMKK 253

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L    +AH LRH F   +  N   L  +  I+GH    T  IY      +    + +I
Sbjct: 254 ARL-KGLSAHDLRHRFGYVMAVN-TPLHRLAQIMGHDSPDTMMIYVKATRSDLQSEVEKI 311


>gi|257452045|ref|ZP_05617344.1| putative integrase [Fusobacterium sp. 3_1_5R]
 gi|317058593|ref|ZP_07923078.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
 gi|313684269|gb|EFS21104.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
          Length = 329

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 59/312 (18%), Positives = 129/312 (41%), Gaps = 25/312 (8%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           E N+  E   +   +    +L    +E G S+ +L  Y+      L  +          +
Sbjct: 39  EKNDFMEEDIWTNERLLNTFLSAKRVE-GCSEKSLSYYQKTIETMLNSIG---------K 88

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            I+ +   ++R+++++ +++K   R ++      + SF  +L+      +S +  +  +K
Sbjct: 89  EIKYIVTDDLRSYLTEYQSEKQSSRVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVK 148

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
             +S+    ++++   + D+            + R+ A++ +L   G+R+ E + L  Q+
Sbjct: 149 TISSIKDTYSDEELERMRDSC----------HEIRDLALIDILASTGMRVGELVLLNRQD 198

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I   +    + GKGDK R+V      +  +  Y +     ++ N  L +        L  
Sbjct: 199 IQFGERECIVFGKGDKERVVYFDARTKIHLQNYLNTR---VDSNPALFVALRKPYNRLTI 255

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           G  +  +R++ + L +      H  R + AT  +  G  +  +Q +LGH R+ TT  Y  
Sbjct: 256 GGIEVRLRKIGKELEINK-VHPHKFRRTLATIAIDKGMPIEQLQKLLGHRRIDTTLQYAM 314

Query: 301 VNSKNGGDWMME 312
           V   N      +
Sbjct: 315 VKQSNVKLAHKK 326


>gi|33867240|ref|NP_898798.1| putative transposase [Rhodococcus erythropolis]
 gi|33669074|gb|AAP74068.1| putative transposase [Rhodococcus erythropolis]
          Length = 373

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/333 (20%), Positives = 117/333 (35%), Gaps = 43/333 (12%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            S +       +L  L  +R  S  T+++Y  D   F  +L  ++        I  ++  
Sbjct: 35  PSADKYPLVNEYLAYL-TDRNYSPRTVRAYGYDLLAFCRWLESHS------NDIDSVTTD 87

Query: 70  EIRAFISKRRT------------------QKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111
            +  F+   R                         ++   L+ +     +   R+    +
Sbjct: 88  TVLDFMRHCRETAIEGRPANVLSMTGKRLDHYSATTINHRLAALTGLFTFRTLREPELRN 147

Query: 112 NILNMRNLKK-----------SNSLPRALNEKQALTLVDNVLLHTSHETKWI-----DAR 155
            I + R  ++               P+  +  +              E   +       R
Sbjct: 148 PIPSGREARRVSAEERDGLLGHLVRPKRRSALRLREPRRLPRPLDRREAADLLSSLRTWR 207

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
           + +I  L+   GLR  E L+L   +I      +R+ GKG K R VPL   V   I  Y  
Sbjct: 208 DRSIAGLMLLSGLRSGEILALDGTDIDIGARWIRVFGKGAKERRVPLDVEVAGLIQTYLL 267

Query: 216 LCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
               + +      + +G  RG+PL P   +   R  R   G+P     H LRH+F T + 
Sbjct: 268 TERPESSSPRLFLVAKGPNRGQPLTPAGLRTIFRYHRIKSGVPAG-HPHALRHTFGTAMA 326

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
             G DL  +Q++LGH  + TT  Y ++   +  
Sbjct: 327 EAGVDLAVMQALLGHAHVDTTARYIHLTPTHVK 359


>gi|289450059|ref|YP_003474822.1| phage integrase, N-terminal SAM domain-containing protein
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184606|gb|ADC91031.1| phage integrase, N-terminal SAM domain protein [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 329

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/301 (19%), Positives = 120/301 (39%), Gaps = 35/301 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             N+L    IE G S+ +L  Y          +          + +R++   ++R ++++
Sbjct: 55  LNNFLSAKRIE-GCSEKSLTYYRATIESMTTRIK---------KNVREIETDDLRTYLTE 104

Query: 78  RRTQKIGDR----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            + +K   +    +++R LS   SF  +L+      +S    +  +K + ++     ++ 
Sbjct: 105 YQQEKNSSKVTVDNIRRILS---SFFSWLEDENYILKSPARRIHKVKAALTIKDTYTDEA 161

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              + D+            + R+ A++ +L   G+R+ E + L   +I  ++    + GK
Sbjct: 162 LEKMRDSCE----------ELRDLALIDILASTGMRVGELVLLNRDDINFEERECVVFGK 211

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR 251
           G K R+V      +  +L Y      D        LF  +R   + L  G  +  +R+L 
Sbjct: 212 GSKERMVYFDARTKIHLLTYLQGRTDD-----NPALFVSLRAPHERLKIGGVECRLRELG 266

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             L +      H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V   N      
Sbjct: 267 NKLDIEK-VHPHKFRRTLATMAIDKGMPIEQLQQLLGHKRIDTTLQYAMVKQSNVKLAHR 325

Query: 312 E 312
           +
Sbjct: 326 K 326


>gi|312870846|ref|ZP_07730951.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 3008A-a]
 gi|311093536|gb|EFQ51875.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 3008A-a]
          Length = 329

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 64/313 (20%), Positives = 124/313 (39%), Gaps = 37/313 (11%)

Query: 8   EIVSFELLKE--RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           E  + EL  E    N+L    IE G S+ +L  Y          +          + +R+
Sbjct: 43  EETNAELTNEHFLNNFLSAKRIE-GCSEKSLTYYRATIEVMTTKIK---------KNVRE 92

Query: 66  LSYTEIRAFISKRRTQKIGDR----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           +   ++R ++++ + +K   +    +++R LS   SF  +L+      +S    +  +K 
Sbjct: 93  METDDLRTYLTEYQQEKNSSKVTVDNIRRILS---SFFSWLEDENYILKSPARRIHKVKA 149

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           + ++     ++    + D+            + R+ A++ +L   G+R+ E + L   +I
Sbjct: 150 ALTIKETYTDEALEKMHDSCD----------EPRDLALIDILASTGMRVGELVLLNRDDI 199

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLN 239
             ++    + GKG K R+V      +  +L Y      D        LF  +R     L 
Sbjct: 200 NFEERECVVFGKGSKERMVYFDARTKIHLLTYLQGRTDD-----NPALFVSLRAPHDRLK 254

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            G  +  +R+L   L +      H  R + AT  +  G  +  +Q +LGH R+ TT  Y 
Sbjct: 255 IGGVECRLRELGNKLNIEK-VHPHKFRRTLATMAIDKGMPIEQLQQLLGHKRIDTTLRYA 313

Query: 300 NVNSKNGGDWMME 312
            V   N      +
Sbjct: 314 MVKQSNVKLAHRK 326


>gi|325912538|ref|ZP_08174926.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners UPII 60-B]
 gi|325478159|gb|EGC81283.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners UPII 60-B]
          Length = 329

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 64/317 (20%), Positives = 127/317 (40%), Gaps = 37/317 (11%)

Query: 4   NNLPEIVSFELLKER--QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           N + E  +  L  E+   N+L    IE G S+ +L  Y          +          +
Sbjct: 39  NEMEEETNAGLKNEQFLNNFLSAKRIE-GCSEKSLTYYRATIEVMTTKIK---------K 88

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDR----SLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
            +R++   ++R ++++ + +K   +    +++R LS   SF  +L+      +S    + 
Sbjct: 89  NVREMETDDLRTYLTEYQHEKNSSKVTVDNIRRILS---SFFSWLEDENYILKSPARRIH 145

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
            +K + ++     ++    + D+            + R+ A++ +L   G+R+ E + L 
Sbjct: 146 KVKAALTIKETYTDEALEKMRDSCE----------EPRDLALIDILASTGMRVGELVLLN 195

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--G 235
             +I  ++    + GKG K R+V      +  +L Y      D        LF  +R   
Sbjct: 196 RDDINFEERECVVFGKGSKERMVYFDARTKIHLLTYLQGRTDD-----NPALFVSLRAPH 250

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           + L  G  +  +R+L   L +      H  R + AT  +  G  +  +Q +LGH R+ TT
Sbjct: 251 ERLKIGGVECRLRELGNKLDIEK-VHPHKFRRTLATMAIDKGMPIEQLQQLLGHKRIDTT 309

Query: 296 QIYTNVNSKNGGDWMME 312
             Y  V   N      +
Sbjct: 310 LQYAMVKQSNVKLAHRK 326


>gi|124265889|ref|YP_001019893.1| phage integrase [Methylibium petroleiphilum PM1]
 gi|124258664|gb|ABM93658.1| phage integrase [Methylibium petroleiphilum PM1]
          Length = 338

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 68/326 (20%), Positives = 126/326 (38%), Gaps = 60/326 (18%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQ 81
           +++ + +  +  T ++Y    R++++F              R +   EI AF+S     +
Sbjct: 29  EHIRV-KHYALRTERTYVEWVRRYILFHGKRHP--------RDMGALEIEAFLSHLALER 79

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +   +  ++ + +    K +   +      +  +   K S  LP  L +++A  L+   
Sbjct: 80  GVASATQNQAKAALLFLYKEVL--RAVDLPWLTEVVAAKTSRRLPVVLTQREARELLMQ- 136

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV 200
                     +   +     LLYG GLR+ E L L  +++  ++  L ++ GKG K R+ 
Sbjct: 137 ----------LHGAHWLAASLLYGSGLRLLECLRLRVKDVEFERRELVVRQGKGSKDRVT 186

Query: 201 PLLPSVR------------------------------------KAILEYYDLCPFDLNLN 224
            L  ++                                     +A   +     F   + 
Sbjct: 187 VLPENLLLPLRNQLAQARALHERDLAAGRGAVWLPDALAVKFPRAARAWGWQWVFPSRVL 246

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
              P     R   L     QR +    R  G+    + H LRHSFATH+L  G D+R++Q
Sbjct: 247 SVDPRSGVERRHHLAEQGLQRAVSLAARRAGIDKPCSPHVLRHSFATHMLQAGYDIRTVQ 306

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWM 310
            +LGH  + TT IYT+V ++ G   +
Sbjct: 307 ELLGHADVKTTMIYTHVLNRGGRGVL 332


>gi|324323949|gb|ADY24992.1| integrase family protein [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 296

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 71/301 (23%), Positives = 127/301 (42%), Gaps = 17/301 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             ++   L+ E G    T+Q Y         ++   T E         L+  ++  ++S 
Sbjct: 4   IDSFQCYLQEE-GKRHRTIQEYVASVVALEKWVVERTGENFNPDF---LTSRDLHEWVSF 59

Query: 78  RRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            +T +K+   ++ + ++ IK +  YL +   +  +  + +   K+    P A   +    
Sbjct: 60  MQTVEKLAPATINKRVAAIKVYWSYLVQAGYSILNPTIKV---KRKRISPLAQAPRWLSR 116

Query: 137 LVDNVLLHTSHETK--WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGK 193
           L  +  LH  H+ K  W   RN AI+ ++   GLRISE +SL  ++I   + T+  I GK
Sbjct: 117 LEQDKFLHQIHKEKHVWKKTRNLAIVQIMLQAGLRISEVVSLDIEDIDLKRRTITVISGK 176

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRR 252
           G K RI  +   + K +  +  +         Q+ LF   R    +        I+    
Sbjct: 177 GGKNRIALMNLELMKTVENWLGVRGEL----SQVALFLSARHSTRITRQGIHYLIKNYLH 232

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            +GL    +AH+LRHSF  +L+     L+ I  + GH  L TT+ Y   +  +    +  
Sbjct: 233 SIGLT-DYSAHSLRHSFCRNLVDANQPLQIIAQLAGHESLETTRRYITPSENDLRRAVES 291

Query: 313 I 313
           I
Sbjct: 292 I 292


>gi|221636287|ref|YP_002524163.1| tyrosine recombinase [Thermomicrobium roseum DSM 5159]
 gi|221157480|gb|ACM06598.1| tyrosine recombinase [Thermomicrobium roseum DSM 5159]
          Length = 334

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 70/323 (21%), Positives = 124/323 (38%), Gaps = 28/323 (8%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +    +L +L     LS  +  +Y    R+FL  L            + +L      A
Sbjct: 5   IEEAVARFLDDLR----LSPRSRTTYALALRKFLRHLEEVQGLSPEA-AVSELREEHAIA 59

Query: 74  FISKRRTQKIGD-------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           F+       I         R+ + + + ++ F  YL    + T  +   +R ++ +  LP
Sbjct: 60  FLRDLVPDDIKTPEQVSRMRTAQTTFAAVRKFYGYLISFDLHTGLSTEKLR-VRAATVLP 118

Query: 127 RALNE------KQALTLVDNVLLHTSHETKWIDARN---SAILYLLYGCGLRISEALSLT 177
           R               +VD+V           + R     A++  L+  G+R+SE  +L 
Sbjct: 119 RFTPPPPDVRTSDLERIVDHVRRLAPESDPIKELRRLKVRALILFLFRTGVRVSELCALR 178

Query: 178 PQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF-----R 231
            Q+I  +  T RI + KG K R V       +A+  Y+             P F      
Sbjct: 179 RQDIDLETGTARIYRAKGGKSRTVHFDSETAEALAAYWRARGDSGRGVNAFPAFSGRDRP 238

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           G  GK + P   Q  + +L    G+  + T H+ RH  AT L+       ++Q+ILGH  
Sbjct: 239 GQPGKAIAPRTVQALVSRLSEEAGVEFAVTPHSFRHGLATELVRRRVRESTVQTILGHAS 298

Query: 292 LSTTQIYTNVNSKNGGDWMMEIY 314
             TT+IY ++ ++   +     +
Sbjct: 299 PVTTRIYVHLTAQEAAEEYQAAF 321


>gi|159905040|ref|YP_001548702.1| integrase family protein [Methanococcus maripaludis C6]
 gi|159886533|gb|ABX01470.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 282

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 118/296 (39%), Gaps = 27/296 (9%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + LE   GLSK T  +Y+   R F  ++          +  R +   ++  F +     K
Sbjct: 8   RYLEFCAGLSKSTKNAYKYGLRTFQKYVN---------KRWRDVMVNDVILFYTNHNATK 58

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVDNV 141
                L   L  +  F  +  +     E+ +   ++ L++       L   QA  L+ N+
Sbjct: 59  NSKMGL---LGIVNRFYDWAIEENYLLENPVKKFLKTLRREKKERNYLTTSQAEYLLSNM 115

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV 200
             ++             +   +   G+RISE  ++  Q+I  +   + I+ GKG K R V
Sbjct: 116 KKYS----------YYVMTLFILRTGVRISEIRNIKLQDIDFESKCIFIRAGKGKKDRYV 165

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-GLPLS 259
               ++   I EY     +         LF    G+P++      Y   L      + + 
Sbjct: 166 FFDNNLEFHIKEYIKERCY--RDPDCDNLFINRFGRPVSRRSIIYYTEYLNEVAPNIHIR 223

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            T H LRH+FAT +L  G DL+S+  ILGH  +STT IY + N +        + +
Sbjct: 224 ITPHILRHTFATSMLERGIDLKSLSLILGHENISTTSIYLHKNKEALQREYQRVME 279


>gi|153000221|ref|YP_001365902.1| phage integrase family protein [Shewanella baltica OS185]
 gi|151364839|gb|ABS07839.1| phage integrase family protein [Shewanella baltica OS185]
          Length = 296

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 72/303 (23%), Positives = 126/303 (41%), Gaps = 37/303 (12%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           ++ E   F+LL   +  L NL ++ G    T+ +Y    R+   +               
Sbjct: 2   DIHEQQRFDLL--YEQHLTNLTLQ-GKRPATIDAYSRAIRRIAAYFDCC---------PD 49

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            L+  +++ + +          ++K   +G++ F  ++  +        LN+    +   
Sbjct: 50  TLTTDDLKRYFADLIASH-SWSTVKLDRNGLQFFYFHVLNKSW----QWLNIVKPPQVKH 104

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   +   ++                R       LY  GLR+ EA+SL   +I   
Sbjct: 105 LPDILTPCEVAIVISLTR----------QLRYQVCFLTLYSMGLRLGEAISLQVGDIDAG 154

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---LNP 240
              + I+  KG K R+VPL      A+  Y+              LF G   +P   ++ 
Sbjct: 155 LMQVHIRDAKGGKDRLVPLPQRTLLALRYYWRTHRHPR------WLFPGKDNQPDSLMDR 208

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           G  Q+ ++Q+     +  + + H+LRHS+ATHLL  G DLRS+Q++LGH  L+TT  YT 
Sbjct: 209 GGLQKAMKQVIAECNIHKAISPHSLRHSYATHLLEQGLDLRSVQTLLGHHSLNTTARYTR 268

Query: 301 VNS 303
           +  
Sbjct: 269 LTD 271


>gi|167461250|ref|ZP_02326339.1| phage integrase family protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322382057|ref|ZP_08055993.1| site-specific tyrosine recombinase XerC-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321153972|gb|EFX46316.1| site-specific tyrosine recombinase XerC-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 301

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 70/304 (23%), Positives = 126/304 (41%), Gaps = 28/304 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL--AFYTEEKI--TIQTIRQLSYTEIRA 73
            Q+++  L     L+  TL+ Y  D + F+ +   A + EE++   I+ +   + T  R 
Sbjct: 15  IQDFIHALTTHEDLNPKTLKEYASDLKHFIGWFETADHQEEEVLFRIEDVATPTLTRYRE 74

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             + ++  K+   ++ R L  +K F ++         +    ++ + +    PR + +K+
Sbjct: 75  --TAQKVMKLKPATINRRLITLKRFFEWAVSE----SNPSKPVKLVPEEKISPRQMTDKE 128

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQ 191
              L+       S        R+  IL L++  GLR  E   L P +I     +  L ++
Sbjct: 129 EAALIAASEHGGS-------LRDQTILILMFHTGLRTMEVCDLAPGDIQIGKRRGQLTVR 181

Query: 192 -GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQ 249
            GK +K R VPL  + R A+ +Y  + P D        LF   +    L     +  I++
Sbjct: 182 SGKRNKQREVPLNATCRAALEKYLAVHPSD-----SPYLFPSEKTGDRLTERALRHLIQK 236

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +   L    +AH LRH F   +  N   L  +  I+GH  L TT IY      +    
Sbjct: 237 YMKSARL-KGLSAHDLRHRFGYVMAEN-TPLHRLAQIMGHDSLDTTMIYVKATRSDLQSE 294

Query: 310 MMEI 313
           + +I
Sbjct: 295 VEKI 298


>gi|228982672|ref|ZP_04142931.1| Integrase [Bacillus thuringiensis Bt407]
 gi|228776855|gb|EEM25163.1| Integrase [Bacillus thuringiensis Bt407]
          Length = 327

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 69/324 (21%), Positives = 135/324 (41%), Gaps = 22/324 (6%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-KITIQTIRQLS 67
           + SF + +  +++L  LE  R  +  T++SY  D   F  F   + +  +   + + QL 
Sbjct: 2   LHSFNIERSIEDFLLYLEGLR-YAPNTIKSYRFDLEGFFTFAIPHNKSMEFEFKRLEQLL 60

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK-KSNSLP 126
              I +        +    +L R  +  + ++K+L K +  +      + ++K K N   
Sbjct: 61  LLYINSLRVYNNKSEYEISTLNRKRACFRKYIKFLNKWEYISSDFSHKIESMKNKKNPNK 120

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDA-------RNSAILYLLYGCGLRISEALSLTPQ 179
             LN ++   +     L +   + W+         RN  I Y L   GLR+SE  +L  +
Sbjct: 121 DILNHEEVAKV--QYYLDSIQTSPWLTPKKQEKYIRNRFIFYTLLYSGLRVSELTNLRWK 178

Query: 180 NIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY---YDLCPFDLNLNIQLPLFRGIRG 235
           +    +  + + +GKG+K R +P+   + +    Y           +  +   LF     
Sbjct: 179 HFNITEGIIIVDEGKGNKNRTIPIHEELVQEYDTYKSSLLSMYGKEHPILTGYLFPRNEK 238

Query: 236 KP---LNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
            P   L     +  IR + +   +     + H LRH+FA++ + N   +  + SILGH +
Sbjct: 239 HPDISLTTKTIRLIIRTIVKESSIVDKHISPHNLRHTFASYSVLNNISIPVLSSILGHSK 298

Query: 292 LSTTQ-IYTNV-NSKNGGDWMMEI 313
            S T  IY +V + K   + + ++
Sbjct: 299 KSITMDIYAHVIDDKQKENELKKL 322


>gi|254452011|ref|ZP_05065448.1| integrase [Octadecabacter antarcticus 238]
 gi|198266417|gb|EDY90687.1| integrase [Octadecabacter antarcticus 238]
          Length = 202

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/151 (39%), Positives = 84/151 (55%), Gaps = 4/151 (2%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYD 215
             +L L YGCG+R  E + L   +I  DQ  +RI Q KG K RIV L   +   + +++ 
Sbjct: 26  RVMLSLAYGCGMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDILSLLRDWWK 85

Query: 216 LCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
             P   + ++  P   LF G RGK L+     R  ++  R  G+    T HTLRHSFATH
Sbjct: 86  ERPTGQDKDVPAPERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTLRHSFATH 145

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           LL  G D+R IQ++LGH +L+TT  Y +V +
Sbjct: 146 LLERGVDIRVIQALLGHSKLTTTARYASVAT 176


>gi|312876873|ref|ZP_07736850.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796388|gb|EFR12740.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 319

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 68/312 (21%), Positives = 122/312 (39%), Gaps = 29/312 (9%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           + +     Q +L   + + G S LT++ YE   R F                       +
Sbjct: 11  NSDWEDALQLFLSYKKAQ-GRSDLTIRDYEIHIRAFFKRYPDCFN-----------DTQK 58

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +R  + +  +Q +   +    +  +K+FL +  +  I   + I   +  K  + +     
Sbjct: 59  LRKCLIEYLSQPMKPVTYNLRMKNLKAFLSWCVEEGIIPTNPIAKFKPRKTDDRI----V 114

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           E    TL    LL       +   R+ A++ L    G+R  EA SL   +       + I
Sbjct: 115 EIDIETL--QKLLQLPDRKTFAGLRDYALMLLTLDTGIRPKEAFSLLKDHFDFKNMQVVI 172

Query: 191 QG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
                K    R++P+ P    AI +           +  +P+F  + GKPLN   +   +
Sbjct: 173 PSDVAKTRVSRVLPISPVTANAIKKLISSRHPQ--WDDSVPVFCSVTGKPLNRYRWNERM 230

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           R+  + LG+      + LRH FA   L NGG   S+Q I+GH  L  T+ Y +   ++  
Sbjct: 231 REYSKQLGV--KIKPYDLRHMFALLYLKNGGYELSLQKIMGHTTLEMTKKYVHFTQQD-- 286

Query: 308 DWMMEIYDQTHP 319
             + +I+ +  P
Sbjct: 287 --LQDIHAKATP 296


>gi|148544102|ref|YP_001271472.1| phage integrase family protein [Lactobacillus reuteri DSM 20016]
 gi|184153472|ref|YP_001841813.1| integrase [Lactobacillus reuteri JCM 1112]
 gi|227364526|ref|ZP_03848588.1| phage integrase/recombinase [Lactobacillus reuteri MM2-3]
 gi|325682358|ref|ZP_08161875.1| phage integrase family integrase/recombinase [Lactobacillus reuteri
           MM4-1A]
 gi|148531136|gb|ABQ83135.1| phage integrase family protein [Lactobacillus reuteri DSM 20016]
 gi|183224816|dbj|BAG25333.1| integrase [Lactobacillus reuteri JCM 1112]
 gi|227070435|gb|EEI08796.1| phage integrase/recombinase [Lactobacillus reuteri MM2-3]
 gi|324978197|gb|EGC15147.1| phage integrase family integrase/recombinase [Lactobacillus reuteri
           MM4-1A]
          Length = 324

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 56/284 (19%), Positives = 112/284 (39%), Gaps = 24/284 (8%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR-SL 88
           G S+ +L+ Y+    + L  +    +E +T          E+R +++  +      + ++
Sbjct: 61  GCSEKSLKYYKTTITKALASIGKNAKEIVT---------DELRNYLTNYQEVHNSSKVTI 111

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
                 + SF  +L+      +S +  +  +K S ++     +++   L DN        
Sbjct: 112 DNIRRILSSFFNWLEDEDYIIKSPVRRIHKVKVSTTVKETYTDEELEKLRDNCK------ 165

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
               D R+ A++  L   G+R+ E + L   +I   +    + GKG K RI       + 
Sbjct: 166 ----DIRDLAMIDFLASTGMRVGELVLLNRDDINFQERECIVFGKGSKERIAYFDARAKL 221

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            + +Y        + N  L +    +   L  G  +  ++ L + LG+      H  R +
Sbjct: 222 HLQKYLYTRT---DSNEALFVSLYRKHTRLTIGGVESRLKHLGKRLGISR-VYPHKFRRT 277

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            AT  +  G  +  +Q +LGH R+ TT  Y  V  +N      +
Sbjct: 278 LATTAIDKGMPIEQLQRLLGHKRIDTTLHYAMVKQQNVKIAHRK 321


>gi|38637701|ref|NP_942675.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527039|gb|AAP85789.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 333

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 115/291 (39%), Gaps = 14/291 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +++ L   R LSK T+ +Y    R+FL     + + ++ +  +R         F ++  
Sbjct: 43  AYVEYLREVRALSKATIINYTPFIREFLEDC--FGDRRVRLSRLRAGDVVNFVQFQAQHL 100

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQALTL 137
             K      K   + ++SFL+Y   R   T      +  +      S+PR +  +Q   L
Sbjct: 101 HLKRA----KLMTAALRSFLRYACYRGDMTLDLAAAVPVVANWSMQSIPRGIPPEQIQEL 156

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           + ++          +  R+ AI+ LL   GLR  E   L   +I  +   L ++GK    
Sbjct: 157 LVSI-----DRRTAVGRRDYAIILLLARLGLRSGEVAFLDLDDIDWNTGVLSVRGKSGLR 211

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
             +PL   V KAI  Y                 +       +       +R   +  G+ 
Sbjct: 212 NGLPLPADVGKAIAAYLRYGRPQSTSRRVFLRAKAPFTGFRSACGVGSIVRHSLQRAGIN 271

Query: 258 LSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
             TT AH  RH+ A+ +L +G  LR I  +LGH    TT IYT V+ K   
Sbjct: 272 APTTGAHQFRHALASQMLRHGASLREIGELLGHHHPQTTSIYTKVDIKALR 322


>gi|222151103|ref|YP_002560257.1| hypothetical protein MCCL_0854 [Macrococcus caseolyticus JCSC5402]
 gi|222120226|dbj|BAH17561.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 339

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 113/289 (39%), Gaps = 30/289 (10%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-------- 81
            LS+ T+ +Y        IF          I    +++  + R +I   + +        
Sbjct: 34  NLSRATIINYNKVFTSLSIFFD-------NIDDPFKITEKQAREYIRYLKNEHVHYKDKL 86

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
                   +   ++   +   KS  + L +      +    ++ LKK N   + +  +  
Sbjct: 87  HHKNEIRGLKASTINTYIKLCKSIYQTLVELNYIESNPFKAIKCLKKQNERIKTIPPEDI 146

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
                N LL++  ++ + D R    +++      RI E L++   +I  D+ ++      
Sbjct: 147 -----NKLLNSLDKSYYTDFRMFTAIHVFLDTFGRIDEVLNIKITDIDFDKRSIYFPNTK 201

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +      +     K +L        D N +    +F  + G       F+  +++  +  
Sbjct: 202 NNDGRYVMFSLKTKKLLVELIDEMKDYNNDF---VFLAVDGGKFTNQAFRNQLKKYCKEY 258

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            +  + T H  RH+ +   L NGG++R +Q ILGH +L+TT+IY +V+ 
Sbjct: 259 NIKTNITPHMFRHTASMLFLENGGNIRVLQKILGHKKLATTEIYAHVSE 307


>gi|229193213|ref|ZP_04320164.1| Integrase [Bacillus cereus ATCC 10876]
 gi|228590190|gb|EEK48058.1| Integrase [Bacillus cereus ATCC 10876]
          Length = 345

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 62/307 (20%), Positives = 126/307 (41%), Gaps = 29/307 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR---------- 79
           GL + TL  Y      F  +LA   E    I+ + +L+    R +I+  +          
Sbjct: 38  GLRERTLTDYMKMWGYFTDWLA---ENYSDIEYVNELTADIFRNYINYLQYDAIRYDGHK 94

Query: 80  ------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
                  + + + ++   L   +S L YL++ ++   + + N+R L++   L   L E +
Sbjct: 95  FITNREERGLKETTINIRLRTYRSMLNYLEREELIEYNPMDNVRLLRQDIDLTNCLTEDE 154

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              ++        ++  ++  R+  I+ LL   GLRI+EAL+L  + I      + + G+
Sbjct: 155 VKAVL-----AQPNQRDYVGFRDFVIINLLLDSGLRINEALNLRVEEIDFKTRFITLTGE 209

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            +K R    +P           L   +        +F    G+ L    F + ++     
Sbjct: 210 RNKNRKPRYVPISAFVAKLLLQLIEENRAHFKTDRIFLSCFGELLGANHFNKRLKYYAEK 269

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+     TAH  RH++A +++ NG D  ++Q + G   + T + Y  ++++     +  
Sbjct: 270 AGIKGKKVTAHVYRHTWAKNMILNGCDPFTLQKMGGWADMRTMRRYIQMDTEE----IRR 325

Query: 313 IYDQTHP 319
            +D   P
Sbjct: 326 SHDDFSP 332


>gi|120401480|ref|YP_951309.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|120404558|ref|YP_954387.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|120406442|ref|YP_956271.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119954298|gb|ABM11303.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119957376|gb|ABM14381.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119959260|gb|ABM16265.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 349

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/327 (18%), Positives = 122/327 (37%), Gaps = 47/327 (14%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                +L +L   RG S  T+++Y  D      FL       + +       + + +   
Sbjct: 20  DAANAFLNHLGG-RGFSAATVRAYAFDVANLSRFLVQQAVGLVAVDAPLVFDWIDWQGVR 78

Query: 76  -------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN---------- 118
                    R +      ++ R ++ +++  +YL    + T++ + + R           
Sbjct: 79  RTDQPTSGHRSSTPPAASTVNRRVAAVRALFEYLVMTGVCTDNPVPSPRRGQGLRQSQRG 138

Query: 119 ----------------LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
                           +++   LP +L+       +  +  H          R+ A++ +
Sbjct: 139 LLGHLGPGRARSGGRLVRQPQRLPESLSTNDVDAFLATLATH----------RDRAMVLV 188

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDL 221
           +   GLR +EA  L   ++   +  LR+ GKG K R VP+  +    +  Y     P  L
Sbjct: 189 MLLGGLRSAEARGLLLTDVDMGRRRLRVIGKGGKERHVPVDAAFFTELAAYLRWERPPGL 248

Query: 222 NLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
                  + RG     P++    +   R+ R   G       H LRH++ T L + G DL
Sbjct: 249 ATPQCFVVLRGPTTGAPVSEAGLRSLFRRHRETSGATR-VRPHRLRHTYGTELSAAGIDL 307

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGG 307
            ++++++GH    TT  Y +++ +   
Sbjct: 308 LTLRALMGHVSPETTARYVHLSIEQLA 334


>gi|329919718|ref|ZP_08276674.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners SPIN 1401G]
 gi|328937237|gb|EGG33663.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners SPIN 1401G]
          Length = 329

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 62/301 (20%), Positives = 121/301 (40%), Gaps = 35/301 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             N+L    IE G S+ +L  Y          +          + +R++   ++R ++++
Sbjct: 55  LNNFLSAKRIE-GCSEKSLTYYRATIEVMTTKIK---------KNVREMETDDLRTYLTE 104

Query: 78  RRTQKIGDR----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            + +K   +    +++R LS   SF  +L+      +S    +  +K + ++     ++ 
Sbjct: 105 YQQEKNSSKVTVDNIRRILS---SFFSWLEDENYILKSPARRIHKVKAALTIKETYTDES 161

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              + DN            +AR+ A++ +L   G+R+ E + L   +I  ++    + GK
Sbjct: 162 LEKMRDNCE----------EARDLALIDMLASTGMRVGELVLLNRDDINFEERECVVFGK 211

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR 251
           G K R+V      +  +L Y      D        LF  +R   + L  G  +  +R+L 
Sbjct: 212 GSKERMVYFDARTKIHLLTYLRERTDD-----NPALFVSLRSPHERLKIGGVECRLRELG 266

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             L +      H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V   N      
Sbjct: 267 NKLNIEK-IHPHKFRRTLATMAIDKGMPIEQLQQLLGHKRIDTTLQYAMVKQSNVKLAHR 325

Query: 312 E 312
           +
Sbjct: 326 K 326


>gi|254446471|ref|ZP_05059947.1| integron integrase subfamily [Verrucomicrobiae bacterium DG1235]
 gi|198260779|gb|EDY85087.1| integron integrase subfamily [Verrucomicrobiae bacterium DG1235]
          Length = 422

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 67/310 (21%), Positives = 118/310 (38%), Gaps = 60/310 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           R  S  TL++Y    R+F  +L          + +  +      +F +     +++   +
Sbjct: 119 RQYSTNTLRTYVMWVRRFQDYLKG--------KAVVAVDAENAASFFTYLACEKRVVAST 170

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++ S +    +++ KR+         +   +++  +P  L+  +   + +        
Sbjct: 171 QNQAFSALLFLFRHVLKRRF---EGFEGVVRARRTKYIPVVLSRAEVDAVFEQ------- 220

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
                   + A   L+YGCGLR+ E +++   ++      L +  GKG K R VPL   +
Sbjct: 221 ---LTHPFDLA-TRLMYGCGLRLFEVVNVRVGSLNFGAGILTVHDGKGRKDRTVPLPRCL 276

Query: 207 RKAILEYYDLCPFDLNLNIQ-------------------------LPLFRGI-------- 233
            + +          L  +I+                           LF           
Sbjct: 277 MQDLERQVRRVRIQLGRDIEGGFDGVFMPGSMDRKGGSLAKELPWQWLFPYRKLTLVRGT 336

Query: 234 ---RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
              R    +       IR+  R +GL    TAHT RHSFA+HLL    D+R+IQ +LGH 
Sbjct: 337 EERRRYHAHEKKLGAAIREAARRVGLAKRVTAHTFRHSFASHLLEANYDIRTIQELLGHS 396

Query: 291 RLSTTQIYTN 300
            L TT IYT+
Sbjct: 397 SLETTMIYTH 406


>gi|226228936|ref|YP_002763042.1| integrase [Gemmatimonas aurantiaca T-27]
 gi|226092127|dbj|BAH40572.1| integrase [Gemmatimonas aurantiaca T-27]
          Length = 320

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 69/315 (21%), Positives = 123/315 (39%), Gaps = 60/315 (19%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSLK 89
            S  T++ Y     +F+ F          +Q    L  + + AF++     +K+   +  
Sbjct: 19  YSPRTVEVYVRWIVRFVRFH--------GMQHPSALGDSAVSAFLTYLASERKVAASTQN 70

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           ++L+ +      +  + +     +      K  + LP  L+      ++   +  T H  
Sbjct: 71  QALAALAFLYAEVLGQPLGA---VQGFLVAKVPHRLPNVLSRAAVRRVL-VHMRGTPH-- 124

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRK 208
                    +  LLYG GLR++E   L  +++  D+  LR++ GKG + R+  +  S+  
Sbjct: 125 --------LMASLLYGTGLRLNECCQLRVKDLDLDRKELRVRAGKGGRDRVTMVPESLIA 176

Query: 209 AILE------------------------------------YYDLCPFDLNLNIQLPLFRG 232
            + E                                    +     F      +      
Sbjct: 177 PLREHLRAAKVLMARRASAGGGYVALPGAMDRKAAGASRQWGWCWVFPAAREYRDASTGE 236

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
            R   L+  V QR + +  R  G+      HT RHSFATHLL +G D+R++Q +LGH  +
Sbjct: 237 RRTHHLHHTVLQRAVAEAARRAGIGQRVGCHTFRHSFATHLLEDGYDIRTVQELLGHRDV 296

Query: 293 STTQIYTNVNSKNGG 307
           STT IYT+V ++ G 
Sbjct: 297 STTMIYTHVLNRGGR 311


>gi|229175638|ref|ZP_04303146.1| Integrase [Bacillus cereus MM3]
 gi|228607779|gb|EEK65093.1| Integrase [Bacillus cereus MM3]
          Length = 330

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 57/313 (18%), Positives = 121/313 (38%), Gaps = 31/313 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-------- 81
           G    TL+ Y      F  +L     +   I+ + +L+    R +I+  +          
Sbjct: 28  GCRDRTLKDYMKMWGYFTDWLF----DNYEIEYLEELTTEMFRNYINYMKYDKKRYEGHK 83

Query: 82  ---------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
                     + D ++  ++  +++ + YL + ++   + I  ++ L++   L  + N++
Sbjct: 84  FIDSDKQGIGLCDTTININIRTLRALINYLYREELIEVNPIEKIKLLRQDIDLTNSFNDE 143

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   +     L   +   ++  R+   + +L   GLRI E + L   +I      + IQ 
Sbjct: 144 EIKEI-----LRQPNLRDFVGFRDFVGINVLLDSGLRIQELMGLRVSDIDFQTRFITIQA 198

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
              K R   L+P           L   +        +F    G+PL    F + ++    
Sbjct: 199 NKSKNRKPRLVPVSTHVTKVLLQLINENQAHFKTDRVFLSSYGEPLGANHFNKRLKYYAE 258

Query: 253 YLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             G+     TAH  RH++A +++ NG D  ++Q I G   + T + Y  ++       M 
Sbjct: 259 KAGIKDKKVTAHVYRHTWAKNMILNGCDAFTLQKIGGWSDIRTMRRYIQMD----VGEMR 314

Query: 312 EIYDQTHPSITQK 324
           + +D+  P    +
Sbjct: 315 KSHDEFSPLTRLR 327


>gi|327538850|gb|EGF25494.1| phage integrase family protein [Rhodopirellula baltica WH47]
          Length = 312

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 110/289 (38%), Gaps = 28/289 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSL 88
           GLSK T+  Y    RQ   +                ++  ++R +    + ++     S+
Sbjct: 30  GLSKRTVHGYLRAVRQLADWAQTQ---------PDHVTELQLRKYFLHLKNERQFAYGSI 80

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           + + SGIK F     KR        L    L+++ +LP  L   Q   ++D         
Sbjct: 81  RVAFSGIKFFYTRTCKRNW----ETLATMKLQQAKTLPEVLTIDQVHAIIDACRTERIAL 136

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR 207
             W            Y  GLR+ E  +L   +I   +  + I +GKG K R +PL     
Sbjct: 137 FYWTT----------YSMGLRLDETRNLQVGDIDGKRMMVHIHRGKGAKDRYIPLPAETL 186

Query: 208 KAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             +  ++       F      +          P+     Q+ I ++   L      + HT
Sbjct: 187 LWLRRHWATHRHPRFLFPAEGRDHKQSSTSQTPIQTSTVQKAIGKISVKLRFQKKVSTHT 246

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           LRHS+ATHLL  G  L+ IQ  LGH  L TT +Y ++      +   EI
Sbjct: 247 LRHSYATHLLEAGVSLKVIQKYLGHSSLQTTMVYLHLTETAEANAREEI 295


>gi|327537427|gb|EGF24153.1| Integrase, integron-type [Rhodopirellula baltica WH47]
          Length = 408

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 135/337 (40%), Gaps = 59/337 (17%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++   +   Q + +++    GL+  T +SY    + F+            +    ++  +
Sbjct: 71  INPNEMDAIQEFRRSMRRA-GLAIATERSYVKKLKAFMADRGLNC-----LADFDRIHAS 124

Query: 70  EIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           ++ A ++       +   +  ++   +  F + + KR++     I  +R  K S + P  
Sbjct: 125 DVEAHLTDLAVDGNVSPSTQNQAFHSLLKFFELVLKREMGK---IEAIRANKNSMA-PTV 180

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++ ++   + +            ++     I  LLYGCG+RISEA  L  ++I      +
Sbjct: 181 MSPEEVGQVFEG-----------LEGVYLVIAKLLYGCGMRISEAHRLRVKDIDFANKQI 229

Query: 189 RIQ-GKGDKIRIVPLLPSVRK----------------------------AILEYYDLCPF 219
            I+  KG+K R+VP+   + +                            A+   Y     
Sbjct: 230 EIRQSKGNKSRLVPMPDDLIEPLRRFVKTREALHEHDLANGTASVYLPYALDRKYPSAHR 289

Query: 220 DLNLN--------IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           +L            + P    I    L+   F  ++R+     G+    T+HT RH FAT
Sbjct: 290 ELKWQYLFASHRLSRDPRTGRIHRHHLHASTFPTHLRRAVEQAGILKHVTSHTFRHCFAT 349

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           HLL  G D+R IQ +LGH  + TT+IYT+V + +   
Sbjct: 350 HLLWQGTDIRQIQQLLGHSDVKTTEIYTHVRNPHEAK 386


>gi|217038356|gb|ACJ76643.1| class 1 integrase intI1 [Klebsiella pneumoniae]
          Length = 295

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 67/314 (21%), Positives = 123/314 (39%), Gaps = 64/314 (20%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLPTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNGGDLR 281
           SFAT LL +G D+R
Sbjct: 282 SFATALLRSGYDIR 295


>gi|32267344|ref|NP_861376.1| integrase/recombinase XerD [Helicobacter hepaticus ATCC 51449]
 gi|32263397|gb|AAP78442.1| integrase/recombinase XerD [Helicobacter hepaticus ATCC 51449]
          Length = 362

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 131/296 (44%), Gaps = 22/296 (7%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y     +   FL      + +I T+  +    +  F+S   T  + + S K     +
Sbjct: 74  INTYSTPLLKLYAFLT-----QSSIDTMEDIDEEVLSDFLS-VETSALSNASKKNYRIAL 127

Query: 96  KSFLKYLKKRKITTE-----SNILNMRNL--KKSNSLPRALNEKQALTLVDNVLLHTSHE 148
             F  Y+ K+  +          L + +L  K    LP  LN+K+    +  +      E
Sbjct: 128 IGFFGYIDKQNESDGASYVYDITLKISSLQGKSGQKLPSFLNQKELEQFLRAIDESQLGE 187

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSV 206
              + ARN  I+ L+   G+R+SEAL+L  ++I+   D   + I+GKG+K R+V +  S 
Sbjct: 188 K--VAARNKLIIKLIVYTGIRVSEALNLRCKDILPAKDCYLISIRGKGNKPRVVMIRQSH 245

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTL 265
            + +L  + L        +   LF   +GK L      + +  +    G+      AH L
Sbjct: 246 IQNLLNTW-LTQRLGFSPMHDLLFCNAKGKALTQSYIYKNVENILTQAGIRKEKNGAHML 304

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD---WMMEIYDQTH 318
           RHSFAT L     DL  +Q  LGH  L+T++IYT+ + +   +    M  I ++TH
Sbjct: 305 RHSFATLLYQQKHDLVMVQEALGHSDLNTSRIYTHFDMERLQEVVSVMDNISNKTH 360


>gi|298243705|ref|ZP_06967512.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297556759|gb|EFH90623.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 332

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 59/307 (19%), Positives = 124/307 (40%), Gaps = 24/307 (7%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTE----EKITIQTIRQL------SYTEIRAFIS 76
           +E  L   T  +Y+      +  L+        EKIT+  +R+       + +E+    +
Sbjct: 14  VENRLGHHTSIAYQQALGYLVSLLSSVCGVNELEKITVLHLRECLRYMIETPSEVIRQRT 73

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             +   + D ++K  ++  K F  +  + ++        ++  +    + +    +    
Sbjct: 74  FGKKSNLADSTMKTYVTNWKVFFNWCYQEELIDSDPSARLKTPRPEKRVLKTFTSEHIYK 133

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           ++D + L T      +  R+  IL LL   G+R+SE  +L  +++ D    ++++GKG K
Sbjct: 134 MLDTLDLSTD-----MGFRDYVILLLLLDTGIRLSEIGTLLLEDVHDT--YIKVRGKGRK 186

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---LNPGVFQRYIRQLRRY 253
            R V + P + K + +Y        N +         +      ++    +  + +LR  
Sbjct: 187 EREVGIHPDLGKLLWKYVHKYRHPGNPDEPKIFIDCTKQGKGKAISGPGVKGILYRLRLA 246

Query: 254 LGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           LG      + HT RH+FA   +++GGD+  +   +GH  +  TQ Y             +
Sbjct: 247 LGFKDVRLSPHTFRHTFAKMYMAHGGDIFKLSREMGHSSVRITQRYL---EDFDSTEARK 303

Query: 313 IYDQTHP 319
            +D   P
Sbjct: 304 EHDSHSP 310


>gi|327542930|gb|EGF29382.1| Integron integrase [Rhodopirellula baltica WH47]
          Length = 446

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 68/311 (21%), Positives = 122/311 (39%), Gaps = 65/311 (20%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR---RTQKIGDRSLKRS 91
           T ++Y     +FL             +++ +L   E+R F++      +  +   +L ++
Sbjct: 140 TEKAYTGWVIRFLQMF--------PGRSLEELGEVEVRTFLNDLVANESGGVAASTLGQA 191

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
            S +    K    R++    N +      K   LP  L   +   +            K 
Sbjct: 192 KSALLFLFKETLGREL----NFIEHSQATKPKKLPVVLTIDEVKRV-----------RKH 236

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAI 210
           +      +  L+YG GLR  E   L  +++  D+ T+ ++ GKG+K R+  L   VR+ +
Sbjct: 237 VTGTRRLMFDLMYGSGLRHKECRRLRIKDLQIDEGTILVRNGKGEKDRVTVLPGRVRQEV 296

Query: 211 LEYYDLC-------------------------PFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
           +E  ++C                         P +        LF   R   ++P   + 
Sbjct: 297 IEQIEVCRVRHLQDLEMGEGEVFLPDALKRKYPAESRKFRWQWLFPSPR-TRMDPRSGRY 355

Query: 246 YIRQ------------LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           +                    G+  +   HTLRHSFATHLL  G D+R++Q ++GH  +S
Sbjct: 356 WRHHVSEEFLSKSFAKALEASGVLKNAVPHTLRHSFATHLLEGGSDIRTVQELMGHADVS 415

Query: 294 TTQIYTNVNSK 304
           TT IY +V ++
Sbjct: 416 TTMIYLHVMNR 426


>gi|282901889|ref|ZP_06309792.1| Phage integrase [Cylindrospermopsis raciborskii CS-505]
 gi|281193227|gb|EFA68221.1| Phage integrase [Cylindrospermopsis raciborskii CS-505]
          Length = 287

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 63/276 (22%), Positives = 117/276 (42%), Gaps = 32/276 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G S  + ++Y    R ++ +L+           I   +    R +            ++ 
Sbjct: 30  GKSNHSKRNYTRVIRSYISYLSDI--------HIANSTAAHFRNYQEYLYQSGKTINTIN 81

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEKQALTLVDNVLLHTSHE 148
              + IKSF  +L+   +   +    +++ K  ++L  R L   +   ++          
Sbjct: 82  TYTNIIKSFFTFLRDESVLPTNITHRVKSPKPVSALRERILTRAEIDAMI---------- 131

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSV 206
           T   + RN  IL LL+ CGLR+SE   L   +I D+ ST  + I GKG+K R + + P +
Sbjct: 132 TLETNTRNRLILQLLFFCGLRVSELTILLWADIKDNGSTAYVHITGKGNKQRTLIIPPLL 191

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
             ++  +            + P+F+  +G   L        +R   + +G+  S + H L
Sbjct: 192 WASLKSH--------KTTNESPVFKSRKGGKNLTQKAVWDIVRTASQRIGI--SASPHWL 241

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           RH+ A+  L NG D+  + + LGH  ++TT  Y + 
Sbjct: 242 RHTHASLALHNGADINQVSTSLGHSSVATTTKYLHA 277


>gi|227461198|gb|ACP39544.1| putative integron integrase [uncultured microorganism]
          Length = 299

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 68/311 (21%), Positives = 126/311 (40%), Gaps = 60/311 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           R LS+ T Q+Y    R+++ F        +    I          F++   T++ +   +
Sbjct: 11  RHLSRRTEQAYRFWIRKYVHFHGRRHPRDVGPAGIAP--------FVNWLATKRQVAAST 62

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++L+ +    + + +  +        +R +++ + LP  L  ++   L+         
Sbjct: 63  QSQALNAVLFRYRDVLELDVGQLD---GLRRVQRLSRLPVVLTIEEVRRLL--------- 110

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
               ++  +  +  LLYG GLRI+E ++L  ++I    +T+ ++ GKG + R   L   +
Sbjct: 111 --GALEGTSKLLAELLYGTGLRITECMTLRTKDIDLSATTIHVRAGKGGEDRTALLPSRL 168

Query: 207 RKAILEYYDLCPFDLNLNI-------------------------QLPLFRGIRGKPL--- 238
           R  I +           +I                            LF     +P    
Sbjct: 169 RDRIRDQVLAVARLHKRDIAAGAGHAPLPGGLGRKYPNASRELKWQFLFPSRSIRPCPGT 228

Query: 239 --------NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
                   +    Q+  +     +G+    +  TLRHSFATHLL+ G D+R+IQ +LGH 
Sbjct: 229 GRLLRWHASESTLQKRFKMALLAVGIHKQASVRTLRHSFATHLLATGTDIRTIQLLLGHR 288

Query: 291 RLSTTQIYTNV 301
            L TT+IYT+V
Sbjct: 289 NLKTTRIYTHV 299


>gi|56475688|ref|YP_157277.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|56311731|emb|CAI06376.1| phage-related integrase [Aromatoleum aromaticum EbN1]
          Length = 417

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 66/305 (21%), Positives = 127/305 (41%), Gaps = 14/305 (4%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P + +  + +E + + ++++  RGL+  T  S     R+ L  +  + E++I +  +R  
Sbjct: 114 PTMRTTPVDEELRRYDEHMDHIRGLAPKTRSSALRIVRRLL--VTRFGEDEIDVAAVR-- 169

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--S 124
               +R F +++        +    ++ ++ + +Y           I  +         S
Sbjct: 170 -PDHVRRFFAQQAKLYSKPANAGTVVAALRGYFRYRASLGDAVHGLIGAVSYPANWQLAS 228

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP+ L  ++   LV   L       +  D    AI+      GLR  E   L+  +I   
Sbjct: 229 LPKTLTTEEVEQLV-GSLGQAGRSLRRAD----AIVRCALDLGLRSGEVARLSLDDIDWR 283

Query: 185 QSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
             T+ ++  KG    ++PL  +   AI  Y        +           R +P  P + 
Sbjct: 284 AGTITVRHTKGRHDDVLPLPVTTGAAIAAYLKHERPKTHNRAIFVRHVAPRDQPAGPDLV 343

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           ++ IRQ  +  GLP + + H LRH+ A  LL+ G  L+ +  +L H  L+TT IY  ++S
Sbjct: 344 RKTIRQAFKRAGLPYTRS-HLLRHTMANRLLAGGASLKEVADVLRHRSLNTTLIYAKLDS 402

Query: 304 KNGGD 308
           +   +
Sbjct: 403 RKLAE 407


>gi|167465690|ref|ZP_02330779.1| phage integrase family protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 301

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 68/300 (22%), Positives = 123/300 (41%), Gaps = 20/300 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL--AFYTEEKITIQTIRQLSYTEIRAFI 75
            Q+++ +L I   L+  TL+ Y  D + F+ +   A Y EE I  + I  ++   +  + 
Sbjct: 15  VQDFIHSLTIHEDLNPKTLKEYASDLKHFIGWFETANYQEENIVFR-IEDVATPTLTRYQ 73

Query: 76  -SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
            + ++  ++   ++ R L  +K F ++     I        ++ + +    PR + +K+ 
Sbjct: 74  EASQKVMELKPATINRRLITLKRFFEWAASNSIIRRDPSKPVKLVPEEKVSPRQMTDKEE 133

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+       S        R+  IL ++   GLR  E   L P +I   + T+R  GK 
Sbjct: 134 DALIAAAEHGGS-------LRDQTILIVMLHTGLRTMEVCDLAPGDIQIGKLTVR-SGKR 185

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRY 253
           +K R VPL  + R A+ +Y    P          LF   +    L+    +  I++  + 
Sbjct: 186 NKQREVPLNATCRSALEKYLVYLPP-----GSPYLFPSEKTGDRLSERALRHLIQKYMKK 240

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L    +AH LRH F   +  N   L  +  I+GH    T  IY      +    + +I
Sbjct: 241 ARL-KGLSAHDLRHRFGYVMAVN-TPLHRLAQIMGHDSPDTMMIYVKATRSDLQSEVEKI 298


>gi|160875353|ref|YP_001554669.1| integrase family protein [Shewanella baltica OS195]
 gi|160860875|gb|ABX49409.1| integrase family protein [Shewanella baltica OS195]
 gi|315267553|gb|ADT94406.1| integrase family protein [Shewanella baltica OS678]
          Length = 296

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 72/303 (23%), Positives = 126/303 (41%), Gaps = 37/303 (12%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           ++ E   F+LL   +  L NL ++ G    T+ +Y    R+   +               
Sbjct: 2   DIHEQQRFDLL--YEQHLTNLTLQ-GKRPATIDAYSRAIRRIAAYFDCC---------PD 49

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            L+  +++ + +          ++K   +G++ F  ++  +        LN+    +   
Sbjct: 50  TLTTDDLKRYFADLIASH-SWSTVKLDRNGLQFFYFHVLNKSW----QWLNIVKPPQVKH 104

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   +   ++                R       LY  GLR+ EA+SL   +I   
Sbjct: 105 LPDILTPCEVAIVISLTR----------QLRYQVCFLTLYSMGLRLGEAISLQVGDIDAG 154

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---LNP 240
              + I+  KG K R+VPL      A+  Y+              LF G   +P   ++ 
Sbjct: 155 LMQVHIRDAKGGKDRLVPLPQRTLLALRYYWRTHRHP------HWLFPGKDNQPDSLMDR 208

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           G  Q+ ++Q+     +  + + H+LRHS+ATHLL  G DLRS+Q++LGH  L+TT  YT 
Sbjct: 209 GGLQKAMKQVILECNIHKAISPHSLRHSYATHLLEQGLDLRSVQTLLGHHSLNTTARYTR 268

Query: 301 VNS 303
           +  
Sbjct: 269 LTD 271


>gi|126668245|ref|ZP_01739205.1| site-specific recombinase, phage integrase family protein
           [Marinobacter sp. ELB17]
 gi|126627271|gb|EAZ97908.1| site-specific recombinase, phage integrase family protein
           [Marinobacter sp. ELB17]
          Length = 283

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 70/275 (25%), Positives = 119/275 (43%), Gaps = 29/275 (10%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDR 86
           + G S  T  SY         +           ++  QL   ++  F +   + + +   
Sbjct: 14  QHGFSPRTQHSYLYVVTALARYYR---------RSPDQLKVEDLHVFFNYLVQERSLSPA 64

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S +  L GI+     +           + +   K+   +P  L  ++   L+  VL    
Sbjct: 65  SCRVYLHGIRFLYLKVLHWAHFD----VTLVLPKRPQRIPELLTRQEVTRLLAAVL---- 116

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205
                 + ++ A+L + YGCGLR+SEA++L  ++I  ++  LRI QGKG K R+VPL P 
Sbjct: 117 ------NPKHQALLSVTYGCGLRVSEAVALKVKDIDGERHLLRIEQGKGAKDRMVPLAPG 170

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           V +A+  Y+ +    L L     L      + L+    Q+     +   G+      H L
Sbjct: 171 VLQALRRYWQIRHPMLWLFSSDLL----PDRHLHITTPQKVYHTAKTTSGIEKCGGIHAL 226

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           RH++ATH L  G  +  +Q +LGH  L +TQ Y +
Sbjct: 227 RHAYATHQLERGLPIHELQRLLGHSDLRSTQRYLH 261


>gi|257466156|ref|ZP_05630467.1| putative integrase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917313|ref|ZP_07913553.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691188|gb|EFS28023.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 329

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 59/312 (18%), Positives = 130/312 (41%), Gaps = 25/312 (8%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           E N+  E   +   +    +L    +E G S+ +L  Y+    + L  +          +
Sbjct: 39  EKNDSMEEDIWTNERLLNTFLSAKRVE-GCSEKSLSYYQKTIERMLNSIG---------K 88

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            I+ +   ++R+++++ +++K   R ++      + SF  +L+      +S +  +  +K
Sbjct: 89  EIKYIVTDDLRSYLTEYQSEKQSSRVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVK 148

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
             +S+    ++++   + D+            + R+ A++ +L   G+R+ E + L  Q+
Sbjct: 149 TISSIKDTYSDEELERMRDSC----------HEIRDLALIDILASTGMRVGELVLLNRQD 198

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I   +    + GKGDK R+V      +  +  Y +     ++ N  L +        L  
Sbjct: 199 IKFGERECIVFGKGDKERVVYFDARTKIHLQNYLNTR---VDSNPALFVALRKPYNRLTI 255

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           G  +  +R++ + L +      H  R + AT  +  G  +  +Q +LGH R+ TT  Y  
Sbjct: 256 GGIEVRLRKIGKELEINK-VHPHKFRRTLATIAIDKGMPIEQLQKLLGHRRIDTTLQYAM 314

Query: 301 VNSKNGGDWMME 312
           V   N      +
Sbjct: 315 VKQSNVKLAHKK 326


>gi|294056434|ref|YP_003550092.1| integron integrase [Coraliomargarita akajimensis DSM 45221]
 gi|293615767|gb|ADE55922.1| integron integrase [Coraliomargarita akajimensis DSM 45221]
          Length = 443

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 62/322 (19%), Positives = 126/322 (39%), Gaps = 62/322 (19%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RT 80
           L  +    G +  T +SY    R F+         +  +     +S   ++ +++     
Sbjct: 133 LAYMRRT-GKALRTERSYIAHYRDFV--------RRSGLADGSLMSGAMVKDYLNYLAME 183

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +K+   + K +L+ +    + + +  +    + +  +N      +P  +++++       
Sbjct: 184 RKVASSTQKVALNALVYIARDVFEMDLGDIGDFVRAQN---RQRIPVVMSKEETRLFFAE 240

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRI 199
                      +   +  +  + Y  GLR+SE   L  Q++   ++ + ++ GKG K R+
Sbjct: 241 -----------LKGESRLMAQVQYAAGLRVSELCRLRIQDLDLKRNQIMVRCGKGGKDRV 289

Query: 200 VPLLPSVRKAI-------------------------------------LEYYDLCPFDLN 222
            PL   + +A+                                      ++     +   
Sbjct: 290 APLSEKLVEALEVHLRWVRTGFEEDLARSDLDGVYLPDALKRKHSNAGRDWRWQWVWPSR 349

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
                P     R   + P  +QR +    +  GL    T+HTLRHSFATHLL +G D+R+
Sbjct: 350 EISTDPRGGARRRHHVLPRGYQRVVSMAGKRAGLNKRITSHTLRHSFATHLLEDGVDIRT 409

Query: 283 IQSILGHFRLSTTQIYTNVNSK 304
           +Q +LGH ++ TTQ+Y +V  K
Sbjct: 410 VQDLLGHQQVETTQVYLHVMQK 431


>gi|145225223|ref|YP_001135901.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
 gi|315445672|ref|YP_004078551.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315445685|ref|YP_004078564.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315445693|ref|YP_004078572.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315446113|ref|YP_004078992.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|145217709|gb|ABP47113.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
 gi|315263975|gb|ADU00717.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315263988|gb|ADU00730.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315263996|gb|ADU00738.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315264416|gb|ADU01158.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
          Length = 360

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 66/323 (20%), Positives = 119/323 (36%), Gaps = 43/323 (13%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+ L  +R  S  TL++Y  D   F  +L     E      +  ++   +  F+   R
Sbjct: 32  EYLRYLA-DRNYSPRTLRAYGYDLLAFCRWLGSVDVE------LSSVTTETVLDFMRHCR 84

Query: 80  T------------------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
                               +    ++   L+ +     + + R     + I + R  ++
Sbjct: 85  QTPIAGRPTNVVSMTGTRLDRYSSTTINHRLAALTGLFTFRELRDPGLRTPIPSGREARR 144

Query: 122 -----------SNSLPRALNEKQALTLVDNVLLHTSHETKWI-----DARNSAILYLLYG 165
                          P+  +  +              ET  +       R+ A+  L+  
Sbjct: 145 VSAEERNGLLGHLVRPKRRSALRLREPRRLPRALNRRETAELLSSLRTWRDRALAGLMLL 204

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
            GLR  E L+L   ++      +++ GKG K R VPL   V   I  Y  +   + + N 
Sbjct: 205 SGLRSGELLTLDVTDVDIGARWVKVMGKGAKERRVPLDVEVAGLIQTYLLVERPESDSNR 264

Query: 226 QLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
              + +G  RG+PL     +   R  R   G+ L+   H LRH+F T +   G DL  +Q
Sbjct: 265 LFLVAKGPHRGQPLTAAGLRTIFRYHRIKSGV-LAGHPHALRHTFGTAMAEAGVDLAVMQ 323

Query: 285 SILGHFRLSTTQIYTNVNSKNGG 307
           ++LGH  + TT  Y ++   +  
Sbjct: 324 ALLGHAHIDTTARYIHLAPTHVK 346


>gi|226312180|ref|YP_002772074.1| site-specific tyrosine recombinase XerS [Brevibacillus brevis NBRC
           100599]
 gi|226095128|dbj|BAH43570.1| putative recombinase [Brevibacillus brevis NBRC 100599]
          Length = 399

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 63/353 (17%), Positives = 131/353 (37%), Gaps = 59/353 (16%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEI 71
            + ++++ + ++  S  TL  Y  D   F  ++           + I +  +  L    +
Sbjct: 52  VEKFIEHKKAKKN-SPSTLLGYLRDFSFFFRWMMTEGLSTASDMKDIPLSDLNDLRKETV 110

Query: 72  RAFISKRRT------------------QKIGDRSLKRSLSGIKSFLKY-------LKKRK 106
            ++I   +                   ++  DR++ R +S +KS   Y            
Sbjct: 111 ESYILYLQESHLYERSALLSNPTKSAKKEYSDRTISRKISSLKSLFHYLSALAEDENGES 170

Query: 107 ITTESNILNMRN--------LKKSNSLPRALNEKQALTLVDN----VLLHTSHETKWIDA 154
             T + +  +           +      + L + +    VD      L H   E K    
Sbjct: 171 YLTRNVLAKIELEITELTPLARAHAIRAKILIDDEIYQFVDFVYNGYLAHCDTEKKKQYH 230

Query: 155 R-----NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
                 ++A++ ++   G R+SE +SL   +I+ +++ L++  KG K          ++ 
Sbjct: 231 MQNRDRDTALIAMILSGGFRVSEIVSLDLSDIIMEKNQLKLIRKGKKEDAPFFSDWGKEH 290

Query: 210 ILEYYDLCPFDLNLNIQLPLFR-----GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           + +Y  L         +  +F         G  +     Q+ +++  +  G+P   + H 
Sbjct: 291 LAKYLQLRDKYNPEPQEDAVFLAVSPANPNGHRIEVRSVQKLVKKYAKAFGIP-DLSVHK 349

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           LRHSFAT  L    D   +Q+ LGH ++ TT  Y +V      D + +  ++T
Sbjct: 350 LRHSFATQFLRLNPDPHQLQAQLGHSKIETTMQYAHV----LEDALGKAVNRT 398


>gi|126667008|ref|ZP_01737983.1| hypothetical protein MELB17_05659 [Marinobacter sp. ELB17]
 gi|126628414|gb|EAZ99036.1| hypothetical protein MELB17_05659 [Marinobacter sp. ELB17]
          Length = 303

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 126/298 (42%), Gaps = 35/298 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L  L + RG S  T+  Y    RQ   +               QLS  +++ +    
Sbjct: 14  QRYLTELTL-RGKSPKTIDLYTRCLRQVCDYFETC---------PDQLSTDQLQQYFMHL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLPRALNEKQALT 136
              +     +K + + ++SF +Y+  +          +  +K     +L   L+ K+   
Sbjct: 64  VEHR-SWSLVKIARNALQSFYQYVLGK------PWEYVPIVKAPKVQTLQDVLSLKEVER 116

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGD 195
           L+          ++             Y  GLR+SE+L+LT  ++      + ++ GKG 
Sbjct: 117 LI----------SRTRKLSYQVYFLTTYSLGLRLSESLNLTIADVDSHLMRVHVRCGKGK 166

Query: 196 KIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGI----RGKPLNPGVFQRYIRQL 250
           K R VPL     KA+  Y+      DL      P +  +    + + +  G  Q+ I+Q+
Sbjct: 167 KDRFVPLPLMTLKALRRYWATHRHPDLLFPGWHPPYASVATSGKPRVMARGGVQKAIKQV 226

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
               G+      H+LRHSFATHLL NG +LRSIQ++LGH    TT  YT +  +   +
Sbjct: 227 ALDCGIRKHVHIHSLRHSFATHLLENGVNLRSIQTLLGHASPVTTARYTRMTHEAQQN 284


>gi|218534740|ref|YP_002424501.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218525889|gb|ACK86472.1| integrase family protein [Methylobacterium chloromethanicum CM4]
          Length = 291

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 126/298 (42%), Gaps = 31/298 (10%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P+ V+     +    +  L + R  S  T ++YE + R+FL  +          + +  +
Sbjct: 10  PQPVAIPAQADDDEHMLRLWLARSSSPNTRRNYEREARRFLAHVG---------RPLAAV 60

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL- 125
              +++ +I+ R            S + +KS   + ++      +    ++     N+L 
Sbjct: 61  RMGDLQEYIAGRPGSSATTA---LSAAALKSLFAFAQEAGYLRFNVGAAVKVPPIKNTLA 117

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMD 183
            R + E  AL ++                RN  +L +LYG GLRISE  SL  ++    D
Sbjct: 118 ERIMPEGDALLMIRQE----------PALRNRVLLTVLYGGGLRISEVCSLRWRDLAPRD 167

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           +     + GKG K R+V L  +  K +    +    D       P+FR  +G  L+P   
Sbjct: 168 EAGQATVFGKGGKTRVVLLSAATWKVLQALREEALAD------DPVFRSRKGGALDPSAV 221

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            R ++      GLP   +AH LRH+ A+H L  G  +  +Q+ LGH  ++TT  Y + 
Sbjct: 222 HRIVKAAAARAGLPADVSAHWLRHAHASHALDRGAPIHLVQATLGHASVATTGRYLHA 279


>gi|293375666|ref|ZP_06621939.1| phage integrase, N-terminal SAM domain protein [Turicibacter
           sanguinis PC909]
 gi|325842952|ref|ZP_08167804.1| phage integrase, N-terminal SAM-like domain protein [Turicibacter
           sp. HGF1]
 gi|292645717|gb|EFF63754.1| phage integrase, N-terminal SAM domain protein [Turicibacter
           sanguinis PC909]
 gi|325489478|gb|EGC91846.1| phage integrase, N-terminal SAM-like domain protein [Turicibacter
           sp. HGF1]
          Length = 326

 Score =  146 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 57/302 (18%), Positives = 125/302 (41%), Gaps = 25/302 (8%)

Query: 20  NWLQNLEIERGLSKL-TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++++    +  S   T  SYE D    L F      E+I ++ I  ++  ++  ++   
Sbjct: 18  HFIRHFLNLKASSSHYTAISYERDI---LDFFQVDYIEQIQLEQIIAVNMFDVEHYLLDL 74

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKK-------RKITTESNILNMR--NLKKSNSLPRAL 129
           + +     ++ R +S + S  K+L K       + +   +   N++    K +N     L
Sbjct: 75  KGKGCASATINRKVSSLSSLYKWLLKYQDNRTGKSLLYFNPFGNLKDEKPKVNNKETEFL 134

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQST 187
            + +   L+           K ++ RN  I+ L     LR SE +++  ++I    +   
Sbjct: 135 TQDECQRLISIF-----DTRKIVELRNKTIIVLALTTALRKSEMINIKLKDITTYGEYDV 189

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-----IRGKPLNPGV 242
           + +  KG+K  +V +  S+++ I EY +    D+  + +  LF G        + L+P  
Sbjct: 190 IHVMRKGNKKDMVKIQSSLKRLIEEYIERTNRDMIQDAESYLFIGHSRNKRNNEKLDPSS 249

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               ++   +  G+      H+ RH+  T  ++ G  +  ++    H  ++TT  Y +  
Sbjct: 250 LNYMLKSTCKKAGIDKHLKVHSTRHTAITLAITGGASIEKVRDFAAHQNIATTNRYVHSI 309

Query: 303 SK 304
            K
Sbjct: 310 DK 311


>gi|312200217|ref|YP_004020278.1| integrase family protein [Frankia sp. EuI1c]
 gi|311231553|gb|ADP84408.1| integrase family protein [Frankia sp. EuI1c]
          Length = 310

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 70/300 (23%), Positives = 110/300 (36%), Gaps = 25/300 (8%)

Query: 4   NNLPEIVSFELLKERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           + LP   +  L  +R  W  L  L ++ G S  T ++Y     ++      +    +  +
Sbjct: 10  DVLPAAGAVALAGDRDPWPALVALWLDSGFSPRTREAYGRAVAEWTRACEAWGIHPLDAR 69

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
                       +            ++ R L+ + S   Y     +   S +  ++  K 
Sbjct: 70  ------RPHADRWARDLEAAGQASTTIGRKLASVASVYAYALDEHLIDASPLAKVKRPKT 123

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           ++         QA  +  +              R SA++ LL   GLR+SEA+      +
Sbjct: 124 TDR-------HQAPGMTLDQARAFLAAADADGPRTSALMRLLLANGLRVSEAIEADVDQL 176

Query: 182 MDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
             ++    LRI GKG K   V L P   +AI  Y       L      PLF    G  L+
Sbjct: 177 GHERGHRVLRIVGKGSKAATVVLAPPTARAIDAY-------LAGRTAGPLFVTATGNRLD 229

Query: 240 PGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                R IR+L +  GL  L  + H+LR +  T LL  G  LR  Q    H    TT+ Y
Sbjct: 230 RPAVWRTIRRLAKRAGLGDLQLSPHSLRATSVTLLLDAGASLRDAQDHARHADPRTTRAY 289


>gi|116622414|ref|YP_824570.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116626674|ref|YP_828830.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225576|gb|ABJ84285.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229836|gb|ABJ88545.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 412

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 72/282 (25%), Positives = 113/282 (40%), Gaps = 14/282 (4%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
            L  ERGLS  TL  Y     QFL            + +   +  T +  F+  R  +++
Sbjct: 126 YLLQERGLSPSTLLHYVPVAEQFLA-----ERFHNAVPSFAMIRATHVTGFVL-RHARQL 179

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLPRALNEKQALTLVDNV 141
                   ++ ++SF +YL+ R +        +  +   +  +LPR L       +++  
Sbjct: 180 SPVRAGLMVTALRSFFRYLRHRGVIATDLAACVPTVPNWSLSTLPRFLPAAAVERILECC 239

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
                  T  +  RN  IL LL   G+R  E + L+  +I      + I+GKG K   +P
Sbjct: 240 -----DRTTSVGRRNHTILLLLARLGVRAGEVVGLSLDDIDWSTGQITIRGKGGKSAQLP 294

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LST 260
           L+  V  A+ +Y                 R       N       +R+  ++ G+    T
Sbjct: 295 LVNDVGSALADYLRHDRPRSATRRVFLRHRAPLVGFGNSSTISSLVRRALKHAGVESAHT 354

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            AH LRHS AT LL  GG L  I  +L H   +TT IY  V+
Sbjct: 355 GAHVLRHSLATSLLRQGGSLDEIGELLRHQSPNTTAIYAKVD 396


>gi|116511440|ref|YP_808656.1| integrase-recombinase [Lactococcus lactis subsp. cremoris SK11]
 gi|116107094|gb|ABJ72234.1| Integrase [Lactococcus lactis subsp. cremoris SK11]
          Length = 311

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 70/299 (23%), Positives = 130/299 (43%), Gaps = 23/299 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
             K  + +L  L++    SK T+++Y     +F+ F       ++ I  I ++     + 
Sbjct: 3   FEKLVKEYLLELKLG-NYSKETMETYRQHIDKFIDFYKKEISNEMDIYAINKI---HYKL 58

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           FIS+     +    +   L   K+F  YL + ++   S + +++ LK++       N+ +
Sbjct: 59  FISQLLDNSLRATYINAILKSNKAFYSYLIREQVLKTSPMDSIKLLKETKQALTTFNDDE 118

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              +++    +T     +++ARN  I+ +L   G+RISE +++   +       +R+ GK
Sbjct: 119 VKAMLNVWNFNT-----YLNARNKCIIAVLADTGIRISELINIK--DSDLTDQYIRVLGK 171

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLN---------LNIQLPLFRGIRGKPL-NPGVF 243
           GDK R+VP+   +   + +Y  L     N           +   LF G  G+ +      
Sbjct: 172 GDKWRVVPISNELNYLLTKYKRLRDNHFNKIRNRNGKVRELDSELFLGKTGRSIKTITNI 231

Query: 244 QRYIRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +  I Q      +  S   + H  RH +    L  G D+ +I  +LGH  LSTTQIY  
Sbjct: 232 EVMIAQTGLQANVRASVRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIYLQ 290


>gi|149194209|ref|ZP_01871307.1| Phage integrase [Caminibacter mediatlanticus TB-2]
 gi|149136162|gb|EDM24640.1| Phage integrase [Caminibacter mediatlanticus TB-2]
          Length = 268

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 144/306 (47%), Gaps = 44/306 (14%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L KE + +L+ +   +  S  T ++YE   ++ L F+   +        I  ++      
Sbjct: 5   LNKEAEKFLKFIA--KTNSLQTHRTYENVLKEALNFIELES-------NIIDITP----- 50

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
              +     +  +++ + +S ++SF  +LK+     +  I+   ++K   +LP+ ++ + 
Sbjct: 51  --YRLHIANLSKKTIAKKVSVLRSFFDFLKQEGY--KFKIVGDEHIKVPKTLPKPISLEN 106

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
               +           K  +      + +++  GLRISEAL++   +I  D   + I+GK
Sbjct: 107 IKEAL-----------KVANMDEYLAIIVIFSLGLRISEALNIKLSDIHGD--WIEIKGK 153

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K RI+PL P +++ I +Y       L +N +        GK  +    +  I++  + 
Sbjct: 154 GNKTRILPLHPKLKEFIQKY-------LKINPKKEYLFEKDGKKYSENQLRYNIQKAFKK 206

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +G+    T H LRHSFAT++L  G  +  +  +LGH  +STTQIYT +++       ++ 
Sbjct: 207 IGI--HATPHQLRHSFATYMLDKGARINDVSELLGHEFISTTQIYTKLSNSLK----LKN 260

Query: 314 YDQTHP 319
           Y + HP
Sbjct: 261 YLKAHP 266


>gi|296163716|ref|ZP_06846430.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886037|gb|EFG65941.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 418

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 123/288 (42%), Gaps = 15/288 (5%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
            L+  RGL+  T +++    R FL  +  +   +I    +R++   ++  FI + R++  
Sbjct: 131 YLDEIRGLAASTRRNHRDCVRDFL--VDQFGGHRI---DMRRIKPADVLHFIVE-RSKGH 184

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS--NSLPRALNEKQALTLVDNV 141
              S     S ++ +L++ +     TE+ I  +  +       LP+ L + Q    +   
Sbjct: 185 TPASAGTIASSVRVYLRFRQFSGDHTEALIAAVPKVAVWSMARLPKLLTQAQLAQFLSAF 244

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV 200
              T+   +     + A+  LL   GLR+ E  +L   ++   + TLRI+  K  +  ++
Sbjct: 245 DTQTASGRR-----DYAMARLLVELGLRVGEVAALQLADVDWHEGTLRIRATKCKRTDLL 299

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS- 259
           PL     +A+ +Y        +        R    +P+ P V    IR      G P S 
Sbjct: 300 PLPVQTGRALFDYVRFGRPQTSSRALFVRHRAPFDRPVTPAVVCSAIRLAYARCGWPSSS 359

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
              H LRH+ A+ +L NG  L+ I  +L H  ++TT IY  V+ +   
Sbjct: 360 MGTHLLRHTAASRMLGNGASLKDIADVLRHRSINTTMIYAKVDFRRLA 407


>gi|209526214|ref|ZP_03274744.1| integron integrase [Arthrospira maxima CS-328]
 gi|209493311|gb|EDZ93636.1| integron integrase [Arthrospira maxima CS-328]
          Length = 277

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 62/279 (22%), Positives = 110/279 (39%), Gaps = 50/279 (17%)

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +   E+RA       +K+   +   + S +    + +    +        +   +    L
Sbjct: 1   MGVPELRASYYLAVDKKMAASTQNVAPSALLFLYRQVLDPPLPDLDV---LERPQCPKRL 57

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P   +  + L ++           K  D   + ++ LLYG G+R++E L L  +++  D 
Sbjct: 58  PTVFSRPEVLAIL----------AKVGDDPEALVIRLLYGTGMRLTECLRLRVKDVDFDH 107

Query: 186 STLRIQ-GKGDKIRIVPLLPSVR------------------------------------K 208
             + I+  KG K RI  L  S+                                      
Sbjct: 108 GQILIRNSKGKKDRITMLPRSLILPLQQHIARTKLAHDRELLDGYGEVELPDALARKYPN 167

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           A  E+     F      + P    +R   L+    QR ++  ++   +    + HTLRHS
Sbjct: 168 AQREWGWQYVFPAAHRSRDPRSGAVRRHHLSEDRIQRRMKPAKQQASITKHGSCHTLRHS 227

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           FATHLL +G D+R++Q +LGH  + TT+IYT+V ++ G 
Sbjct: 228 FATHLLEDGYDIRTVQELLGHKDVKTTRIYTHVLNRGGR 266


>gi|298251414|ref|ZP_06975217.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297546006|gb|EFH79874.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 350

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 75/336 (22%), Positives = 139/336 (41%), Gaps = 47/336 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF-IS 76
            + ++ +L    G +  T ++   D  QF  +     +       + Q+   ++RA+   
Sbjct: 6   LERYVASLTTA-GKTPATQRAIRSDLAQFCAWWEQMHQRPF---DLTQVVERDLRAWKTV 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           +++ +     ++ R LS ++    +  ++++ TE+ + ++ ++  +   PR+L +     
Sbjct: 62  RQQEEGAAPATINRGLSTLRRLCTWAVEQQLLTENPVKDVADIPSTPVSPRSLPDLAVDA 121

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGD 195
           L+             +  R+ A+L LL   G+RI EA  L  +++     TL ++ GKG 
Sbjct: 122 LLRATRAEPDLR---LRLRDEALLALLVYAGVRIQEACDLQLRDLDLASGTLVVRSGKGG 178

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNL------NIQLPLFRGIRG----KPLNPGVFQR 245
           K R +P+    ++A+  Y         L        + PL  G++     +PL PG+  R
Sbjct: 179 KARRLPVHSEAQRALSRYLQEVRCPEGLPPIGSEQERTPLLVGMQRAVAGRPLAPGIKTR 238

Query: 246 YIRQLRRYLG------LPLSTT----------------------AHTLRHSFATHLLSNG 277
             RQ    LG      L  + T                       H LRHSFA  +L  G
Sbjct: 239 VARQRIAQLGKVAATQLEEAATRERDLARAEQLRACVLQLETAAPHQLRHSFARRMLKTG 298

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             L  +Q +LGH RLSTT IY   + ++    +   
Sbjct: 299 AQLPEVQRMLGHSRLSTTGIYLTPSEEDIRAAVERA 334


>gi|163846861|ref|YP_001634905.1| integrase domain-containing protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222524682|ref|YP_002569153.1| integrase domain-containing protein SAM domain-containing protein
           [Chloroflexus sp. Y-400-fl]
 gi|163668150|gb|ABY34516.1| integrase domain protein SAM domain protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222448561|gb|ACM52827.1| integrase domain protein SAM domain protein [Chloroflexus sp.
           Y-400-fl]
          Length = 317

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 62/312 (19%), Positives = 124/312 (39%), Gaps = 32/312 (10%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           E N      +  ++ E + +L +L+ + GLS  T+ SY CD R   + L+         Q
Sbjct: 3   EANGAGSQHARTIISELEQFLHDLKCDDGLSDNTITSYRCDLRTAGLALS---------Q 53

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            +  ++  +I+ F+++R+ Q     +  R ++ +  F ++  +R   T + +  +     
Sbjct: 54  ELSAITTADIQQFLARRQEQ---PGTTNRRIASLGRFFRWALERGYVTHNPVEQIDGRLP 110

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           +   P+ +  +  L  +D  +                I  +L   G+R  E L+L   ++
Sbjct: 111 TEHRPQPITNEAELRALDQAIAAAPQP-------YRLIFTMLREIGIRTDEVLNLNVGDV 163

Query: 182 MDDQST---LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKP 237
           + +      L    K    R++ L P      L    +   D+ +   + PLFR  RG  
Sbjct: 164 ILEPGREMLLVQDSKSGSKRMIVLTPDAMPRSLRGLRVWVRDMEDAAPETPLFRSSRGTR 223

Query: 238 LNPGVFQRYIRQLRRYLGL--------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           ++     R    + +   L            T H LRH+ A  L+      + ++ ILGH
Sbjct: 224 VSYDTLHRRWVAVCKAARLIDIVDGREQPRYTLHHLRHTAAAELI-AFYPEQVVRRILGH 282

Query: 290 FRLSTTQIYTNV 301
               +T+ Y+ +
Sbjct: 283 RDPRSTRRYSEL 294


>gi|91780851|ref|YP_556058.1| putative phage integrase [Burkholderia xenovorans LB400]
 gi|91693511|gb|ABE36708.1| Putative phage integrase [Burkholderia xenovorans LB400]
          Length = 266

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 66/273 (24%), Positives = 114/273 (41%), Gaps = 26/273 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ  + ++ + R L+  T   Y    R+F  F           ++    +  ++R +   
Sbjct: 12  RQRMIDDMRM-RQLAPKTQDVYLHIVREFARF---------PGRSPDTATVEDLRRYQLY 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    SL  +++G+K F      R       I+ M+ ++    LP  L+  +   L
Sbjct: 62  LVDHGTSAVSLNHAITGLKFFFTVTLDRPEL----IVRMQPVRVPRILPVVLSPDEVRRL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
           ++             + ++   L + YG GLR SE ++L   ++  ++ TLRI QGKG +
Sbjct: 118 IEA----------AGNLKHQTALSVAYGAGLRASEVVALKVTDVDSERMTLRIEQGKGRR 167

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLG 255
            R   L P + + +  ++ +      +     LF G+     L+     R I        
Sbjct: 168 DRYAMLSPVLLERLRVWWRMARAQGKMFDGGWLFPGLDPLDQLSTRQLNRAIHAAAEAAH 227

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +    + HTLRHSFATHLL    D+R IQ +LG
Sbjct: 228 IDKRVSMHTLRHSFATHLLEQKVDIRVIQVLLG 260


>gi|194015373|ref|ZP_03053989.1| site-specific recombinase, phage integrase family protein [Bacillus
           pumilus ATCC 7061]
 gi|194012777|gb|EDW22343.1| site-specific recombinase, phage integrase family protein [Bacillus
           pumilus ATCC 7061]
          Length = 353

 Score =  145 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 54/313 (17%), Positives = 117/313 (37%), Gaps = 25/313 (7%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-------- 81
             +  T+  Y    R  L +      +          +   + A++   R +        
Sbjct: 43  NRAPETIDRYRRACRYLLEYARMIGLDDDIRDIDVDFARGFV-AYLLHERVKFDGHKFKK 101

Query: 82  ------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                  +  +S+   +  +++  ++ +       +   + + +     +   L+  +  
Sbjct: 102 DEHKTPGMSPKSVNDYIKTLRTLFRFAQHEGSALLNPFDDTKLVSDPEEMVNILSPDELR 161

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+         +  ++  R+  I+  L     RI E LSLT +N+    ST+       
Sbjct: 162 RLL-----SAPDQRTFVGFRDYVIMTFLVDSMARIGEILSLTKENVDYASSTVYFSAWDV 216

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R    +P  RK +    +L   + +      +F    G+ L    F++ + +    +G
Sbjct: 217 KTRQGRFVPLERKTMNLIKELLIENEDFESPF-VFLSNYGEQLETNHFRKQLNRYAEQVG 275

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +      H  RH+ AT  L NGGD+R +Q++LGH  +   + YT+++       + E + 
Sbjct: 276 ITKKVHPHLFRHTGATMYLENGGDIRHLQAMLGHRDMRMVKRYTHLS----KSSLKEQHS 331

Query: 316 QTHPSITQKDKKN 328
           +  P +   +K N
Sbjct: 332 KHSPLVQITEKLN 344


>gi|169830694|ref|YP_001716676.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637538|gb|ACA59044.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 390

 Score =  145 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 55/302 (18%), Positives = 119/302 (39%), Gaps = 13/302 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
             +  + + +   + RG++  T+++Y CD R F  FL     E   +  +R+++   +  
Sbjct: 3   FEEAIEAYFEVGVVLRGMAAGTVEAYRCDFRDFSRFL-----ESQGVGEVREITTAVVNT 57

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEK 132
           ++   R + +   ++ R  + + S L +  ++     + +  +    K  ++    L++ 
Sbjct: 58  YLVGLRKRGLSLSTVHRRKNALSSLLGFCVQQGWVDNNPLRKVILQTKPRTVRNVVLSDM 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
              T + + + + S +        +AI  LL   GLR SE +S    ++  +   L +  
Sbjct: 118 AVRTFLQSDVTYRSVD----GLTVTAIKMLLVFTGLRCSEIVSADWAHVNLNSGLLTVFN 173

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
             +  R        R   L    +   +     Q PL +   G  L     +  + +L +
Sbjct: 174 SKNTARKGLPEGKDRDIPLCQTVIQALNALPYRQGPLLQTRGGLRLGVDALREIVARLSQ 233

Query: 253 YLGLP---LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
              L       T H  RH+ A+ L+S G     + ++LGH   + TQ Y +   +   + 
Sbjct: 234 ASRLEYDHRPLTPHCFRHNLASQLVSRGYSEADVATLLGHKPGTVTQAYIHSTIERLREA 293

Query: 310 MM 311
           + 
Sbjct: 294 VQ 295


>gi|221067020|ref|ZP_03543125.1| integrase family protein [Comamonas testosteroni KF-1]
 gi|220712043|gb|EED67411.1| integrase family protein [Comamonas testosteroni KF-1]
          Length = 322

 Score =  145 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 80/309 (25%), Positives = 128/309 (41%), Gaps = 22/309 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L +L  + GL++ TLQ  +   R F  +L      ++T ++    S  ++ AF+   R
Sbjct: 22  DFLTDLFFQEGLAESTLQVLQIQLRAFNAWLL-----EVTGRSWEHASVKDLNAFLLSWR 76

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
             +    +L+     ++    + K   I   S    M +L+     P+      A+    
Sbjct: 77  DAR-SVSTLRLKQWMLQRLYAWAKDAGIVDLSVERAMLSLRGGLRRPKLPPSSNAIA--- 132

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             L+     T     R+ A+L LLYG GLR +E L+LT   +      ++I GKG K R+
Sbjct: 133 -QLMELPDTTTAKGMRDRAVLELLYGSGLRAAELLNLTLDQLPSKGKPMQIWGKGSKERL 191

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKP-LNPGVFQRYIRQLRRY 253
           V +    R  I +Y    P  L            LF      P       +R + +  R 
Sbjct: 192 VVVGDHARHWIAQYKSARPLILADGGHGHRSTAKLFVSSGRYPDYRYYQLRRMVSRYGRE 251

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GL    T H LRH+FA+HL      L +IQ +LGH    TT  Y ++  ++       +
Sbjct: 252 CGL--RLTPHALRHAFASHLYQGKASLHTIQLLLGHECQETTAHYVSIFHEDS----RAL 305

Query: 314 YDQTHPSIT 322
            DQ HP   
Sbjct: 306 VDQHHPRSR 314


>gi|138895716|ref|YP_001126169.1| transposition regulatory protein TnpA [Geobacillus
           thermodenitrificans NG80-2]
 gi|138897050|ref|YP_001127503.1| transposition regulatory protein TnpA [Geobacillus
           thermodenitrificans NG80-2]
 gi|196250971|ref|ZP_03149654.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|134267229|gb|ABO67424.1| Transposition regulatory protein TnpA [Geobacillus
           thermodenitrificans NG80-2]
 gi|134268563|gb|ABO68758.1| Transposition regulatory protein TnpA [Geobacillus
           thermodenitrificans NG80-2]
 gi|196209535|gb|EDY04311.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 379

 Score =  145 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 67/369 (18%), Positives = 144/369 (39%), Gaps = 82/369 (22%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+ L+   G S+ TL++Y    +Q+ +FL          +  R++   ++  F+   R
Sbjct: 30  KYLKYLDTT-GKSRNTLKTYCYALKQYFVFLQEKK------KDYREVRLEDLVEFVVWLR 82

Query: 80  T--------------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI------------ 113
                           K  ++++  +++ + +F  YL + +      +            
Sbjct: 83  NPYESAKVTSLQPVKAKKTEKTINLTITAVTNFYDYLYRNEEIQNDMVDKLLKQVFTGGR 142

Query: 114 -----------------LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
                             ++  +K+     + L +++   L++             + R+
Sbjct: 143 TRYKDFLYHVNKNKPSNRHILKVKEPRKKLKVLTKEEVQQLIEAT----------TNIRD 192

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQ-----------GKGDKIRIVPLLP 204
             ++ LL+  GLRI EALSL  ++ + D  +  RI+                 R + +  
Sbjct: 193 RLLIQLLFETGLRIGEALSLFIEDFIFDHKNGHRIRLVNRGELENGAKLKTGEREIYVSQ 252

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRG----KPLNPGVFQRYIRQLRRYLGLPLST 260
           ++   + +Y      +LNLN    +F  +RG    +P+     +   ++LR+  G+    
Sbjct: 253 ALMDLLDDYLYEVVDELNLNTNF-VFVKLRGKNVGQPMTYCDVEALFKRLRKKTGI--HV 309

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQTHP 319
             H LRH+ AT       D++ +Q  LGH ++ TT  +Y + + +   +   +     H 
Sbjct: 310 HPHLLRHTHATMYYQQTKDIKQVQERLGHSQIQTTMNLYLHPSDEEIRENWEKAQHAFH- 368

Query: 320 SITQKDKKN 328
            IT+K  K+
Sbjct: 369 -ITKKSGKD 376


>gi|94984539|ref|YP_603903.1| phage integrase [Deinococcus geothermalis DSM 11300]
 gi|94554820|gb|ABF44734.1| phage integrase [Deinococcus geothermalis DSM 11300]
          Length = 291

 Score =  145 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 122/299 (40%), Gaps = 20/299 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +    + + +  +  RG +  T++ Y    R+ L        E +T  T+ +        
Sbjct: 3   VADAIEEFQREHKA-RGSTPRTVKWYGETLRRLLTDHLSENVEALTPFTLSRA------- 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            ++    + I   +L      ++ F  +L   ++     +   +       + +    ++
Sbjct: 55  -LNIAGERGIRPATLANYDRALRGFTAWLHGVELLPRDPMKAKKRPVVRWQMKQVATPEE 113

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
             TL +      +   K    RN AIL LL GCGLR  E  SL   ++    S +++ GK
Sbjct: 114 IRTLFE-----LARRDKRYADRNCAILALLAGCGLRAGEVASLKLTDVDWHGSAVKVSGK 168

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
               RIVP+  + ++ +  Y        + N+   LF G    P+        + ++   
Sbjct: 169 TG-ERIVPMDRTTQRLLRRYVTHGRRGNHPNVF--LFSGR---PIKAMTLTHLLSRMSDR 222

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G     T H LRH+ AT  L NGGD+ S++ ILGH  ++TT +Y ++  ++    +  
Sbjct: 223 AGFTRRVTPHLLRHTAATTYLRNGGDVASLRRILGHATINTTALYLHLVPEDLQTKLER 281


>gi|296273270|ref|YP_003655901.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
 gi|296097444|gb|ADG93394.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
          Length = 351

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 65/264 (24%), Positives = 118/264 (44%), Gaps = 20/264 (7%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI--- 113
           K    ++R++    +  F++ + T  + D S K     + SF  Y+ K+      N    
Sbjct: 89  KFGASSMREIDEEILSDFLASQ-TANLSDASKKNHRIALISFFGYIDKQNEEENGNAYRY 147

Query: 114 -LNMRNL-----KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
            + ++N      K    LP  +N+++    +  +      +   I  RN  I+ ++   G
Sbjct: 148 GIELKNWGGLSGKSGTKLPSYMNKEEVNKFIKAID-EYPFKNPIIGTRNRLIIKIILYTG 206

Query: 168 LRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKA-ILEYYDLCPFDLNLN 224
           +R+ EA+S+  ++I    D   ++++GKG+K RIV +   + K  +  + +    + NL 
Sbjct: 207 IRVGEAISIKIKDINKDGDAYIIQVRGKGNKPRIVMIKEHIIKDDLSTWLENNCCEENL- 265

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSI 283
               LF   + K L      R + Q+    G+       H LRHSFAT L  N  DL  +
Sbjct: 266 ----LFCNQKNKKLTQAYIGRLVEQILISCGIRKEKNGPHMLRHSFATLLYQNSHDLILV 321

Query: 284 QSILGHFRLSTTQIYTNVNSKNGG 307
           Q  LGH  ++T++IYT+ +     
Sbjct: 322 QESLGHADINTSRIYTHFDKNRLN 345


>gi|296165952|ref|ZP_06848417.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295898696|gb|EFG78237.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 380

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 67/351 (19%), Positives = 128/351 (36%), Gaps = 75/351 (21%)

Query: 14  LLKERQNWLQNL-EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +++  + +L +L  IER  S  T+++Y  D R +  FL              ++   E+ 
Sbjct: 38  VVEPVEAFLSHLHAIER--SPNTVKAYAHDLRDWFEFL------DRGGLVWSRVRLEEVG 89

Query: 73  AFISKRR----------------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTES----- 111
            F++  R                     + ++ R LS I +F ++ ++  +         
Sbjct: 90  RFVAWLRLPAAGRVGNVSALPTAESMCSEATVNRKLSAISAFYEFHQRHGVDLGDLLTTW 149

Query: 112 -----------NILNMRNLKKSNS----------LPRALNEKQALTLVDNVLLHTSHETK 150
                       +L     +   S          +P  L+ +    +V            
Sbjct: 150 QRHKGHGGSWRPLLAHLGSRPERSRRIRLRAQRRIPDTLDTELVAAIVAACDR------- 202

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---------QGKGDKIRIVP 201
               R+  +  LL   GLR+ EAL L   +I      + +         + KG   R VP
Sbjct: 203 ---LRDRFLFSLLAASGLRVGEALGLRHSDIDAAARLVTVVPRVNTNRARAKGGG-RQVP 258

Query: 202 LLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +  +V +   +Y      +L+ + + + L+ G  G PL        + +LR   G+    
Sbjct: 259 VPGAVIRLYADYLHGEYGELDSDYVFVNLWSGPIGYPLTYASVYDLVCRLRERTGIMFG- 317

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
             HT RHS+AT LL     +  +  +LGH  ++TT   Y ++  ++    +
Sbjct: 318 -PHTFRHSYATELLRRQVPVEVVAHLLGHASIATTSDAYAHLKVEDTRRAL 367


>gi|10956538|ref|NP_043131.1| integrase/recombinase [Lactobacillus delbrueckii]
 gi|971481|emb|CAA90742.1| integrase/recombinase [Lactobacillus delbrueckii]
          Length = 333

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 82/330 (24%), Positives = 139/330 (42%), Gaps = 37/330 (11%)

Query: 5   NLPEIVSFELLKERQ---NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
            LP+I   +L+   Q    ++ +L      S+ T+++Y    + F  +LA          
Sbjct: 22  ELPKISMIDLILNEQVMSAFIVDL----NKSQSTIKTYTRCLKSFAQWLAMNG------- 70

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            I+Q S + I+ ++     Q     ++   +  +K + K+L+ ++I       N+ N++ 
Sbjct: 71  -IQQTSESTIKLYMQWLENQGRQPSTIHLYIVVVKRWFKWLEAKRIYP-DVAKNVENVRV 128

Query: 122 SNSLPRALNEK-QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               P++  +  Q   ++D     T  +T     RN A+L LL+ CGLR  EA      N
Sbjct: 129 RKDSPKSFFQAHQVKKILD-----TVDQTSEKGKRNYALLVLLFTCGLRTIEASRARVDN 183

Query: 181 IMDDQS--TLRIQGKGD--KIRIVPLLPSVRKAILEYYDLCPFDLN--LNIQLPLFRGI- 233
           I  + S   L I GKG       VPL       + EY              + PLF    
Sbjct: 184 IRLNGSQLVLYIHGKGHKTDDDYVPLPDKTYAVLCEYLSTRGIKPKDFETCKQPLFTSTS 243

Query: 234 ---RGKPLNPGVFQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
              + + ++     +  +   R  G      TAH+ RH+ AT  L+NG DLR  Q +L H
Sbjct: 244 NRSKDQSISTNAISKICKSCFRKAGYDQHDWTAHSTRHTAATLALTNGADLRETQMLLRH 303

Query: 290 FRLSTTQIYTN----VNSKNGGDWMMEIYD 315
              +TT+IY +    + ++ G D    I+D
Sbjct: 304 SSPTTTEIYLHQLGKLENQAGKDVANAIFD 333


>gi|315641029|ref|ZP_07896112.1| integrase/recombinase [Enterococcus italicus DSM 15952]
 gi|315483198|gb|EFU73711.1| integrase/recombinase [Enterococcus italicus DSM 15952]
          Length = 325

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 131/293 (44%), Gaps = 28/293 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RG+S+ T++ ++   + F  FL     +K  I  +  ++   IR F+  +  +   +  +
Sbjct: 20  RGISQKTIKKHQKFLKLFFDFL-----KKEQIYFVEDVTPKSIRQFMLMKLEEGCAETYV 74

Query: 89  KRSLSGIKSFLKYLKKRKIT--TESNILNMRNLKKSNSLPRALNEKQALTLVD------- 139
              L  I+++ KY           +  + ++ +K+   + +  N+ +   ++        
Sbjct: 75  NSHLRSIRAYFKYCVDEDYIRYDRNPCVRVKWVKERKVIIQTFNDMEIKEMLRVAKKLTF 134

Query: 140 -----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGK 193
                    HT ++TK+ + R+  +L +L   GLRI+E ++L   ++      L +  GK
Sbjct: 135 FKPQKMDKQHTGYQTKFTNQRDYLLLLILIDTGLRINEVMNLK--DVHITNKELFVENGK 192

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCP----FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           G K RIV   P + K  ++Y  +      ++   NI   +F    GK  N  + +R I +
Sbjct: 193 GKKDRIVHCSPLIYKEYIKYKRVANSFFEYNEIENIDNYVFLTREGKQYNYILAERAIIK 252

Query: 250 LRRYLGLPL--STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +     +      + H+ RH FA  L+ NG D+  IQ +LGH  + TT++Y  
Sbjct: 253 IGNQCKIRKSIRVSPHSFRHYFAQKLVRNGTDIYRIQKLLGHASIKTTEVYLR 305


>gi|163751332|ref|ZP_02158558.1| site-specific recombinase, phage integrase family protein
           [Shewanella benthica KT99]
 gi|161328741|gb|EDP99888.1| site-specific recombinase, phage integrase family protein
           [Shewanella benthica KT99]
          Length = 312

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 77/311 (24%), Positives = 132/311 (42%), Gaps = 61/311 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           R  S  T + Y    + F++F      + +  Q        EI  F++     +++   +
Sbjct: 11  RRYSIKTEKVYLYWIKGFIVFNDKKHPQDMGNQ--------EIERFLNHLAVNRQVSGAT 62

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++L  I    +++ +R I+     L     K+  S+P  L  ++A  ++D        
Sbjct: 63  QNQALCAIIFLYRHIIQRDISG----LRYSFTKREKSMPTVLTHEEARAIID-------- 110

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
               ++ +   I  LLYG GLRI+EAL L  ++I  + +TL I +GKG K R   L  S+
Sbjct: 111 ---RLNGKYWLIASLLYGSGLRINEALQLRIKDINLNDNTLFIFRGKGKKDRYTLLPRSL 167

Query: 207 R----------------------------KAILEYYDLCPFDLNLNIQLPLFRG------ 232
           +                             A+L  Y     D++     P          
Sbjct: 168 KPEVELQMTHVKERHSQDLSEGFGLTSLPPALLRKYGDAAKDISWQYFFPSTTRCVHPYD 227

Query: 233 --IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             I    ++   F++ +R+      +P    AHT RHSFAT LL +G D+R++Q +LGH 
Sbjct: 228 GYICRHHIHETSFRKQLRKAVIATQIPKQVKAHTFRHSFATQLLQHGSDIRTVQELLGHT 287

Query: 291 RLSTTQIYTNV 301
            + TT++YT+V
Sbjct: 288 DVKTTELYTHV 298


>gi|257095506|ref|YP_003169147.1| integrase family protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257048030|gb|ACV37218.1| integrase family protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 282

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 68/278 (24%), Positives = 114/278 (41%), Gaps = 34/278 (12%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRS 87
           RG++    ++Y         +           ++   L   E++A++    R +K+   S
Sbjct: 15  RGMAARAQEAYIDALVGLAKYYH---------RSPADLRVEEVQAYLLHLIRDKKLAYAS 65

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           + ++    +   + +  R         ++   K    LP+ L+ ++   L+D+       
Sbjct: 66  VNQASCAFRFLYRRVLGR----PEAGFDIPMAKVPQRLPQILSREEVARLIDSARTLRG- 120

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQ-GKGDKIRIVPLLP 204
                      +L   Y  GLR+SE  +L   +I    D+  L+++ GKG K R   L P
Sbjct: 121 ---------RTLLMTTYAAGLRVSEVCALQVGDIESAADRMCLKVRQGKGGKDRYTLLSP 171

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRRYLGLPLSTTAH 263
            +  A+  Y+       +   +L LF    G  P+     QR     R   G+      H
Sbjct: 172 HLLAALRTYWR------DTRPRLWLFPNRAGTGPMEIQTAQRIYYAARNAAGIAPEGGIH 225

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            LRH+FATHLL  G DL SI  +LGH  LSTT  Y ++
Sbjct: 226 GLRHAFATHLLEAGVDLYSIGRLLGHGHLSTTSRYLHL 263


>gi|49146367|ref|YP_025475.1| putative site-specific recombinase [Caedibacter taeniospiralis]
 gi|40458335|gb|AAR87083.1| putative site-specific recombinase [Caedibacter taeniospiralis]
          Length = 282

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 60/294 (20%), Positives = 128/294 (43%), Gaps = 23/294 (7%)

Query: 16  KERQNWLQNLE-IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
              + +++ LE  E+  S  TL +Y  D   F  +      +        +++ T++R +
Sbjct: 4   DAIERFIKYLESTEK--SPATLINYRRDLNAFAKWFEDNNGDAFLP---AKITTTDLRQY 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
            S         +++ R +  ++SF+ +L        +     + +K++   P  L++ Q 
Sbjct: 59  KSMLIDHPFKPKTINRRIGSLRSFINWLWDIGEIN-NKFPLPKLVKENQPTPMWLDKNQQ 117

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQG 192
             L+        H  ++ + R+++I+ +    G+R+ E ++L   ++   D +  + I+ 
Sbjct: 118 HALMR-------HLERYGNERDASIISIFMNTGMRVQEFVNLKWIDVTLSDKKGIIMIRH 170

Query: 193 -KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            K +K R +PL    R A    +    F  +      + +G RG  +     Q  I++  
Sbjct: 171 SKANKYREIPLNKDARYA----FVKLGFKTHAGSDEYVLQGQRGN-ITTRGIQMMIKRRV 225

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            Y  L    + H LRH+F  +L++ G  L  +  + GH  L TT+IY + + ++
Sbjct: 226 AYTDLDY-LSPHMLRHTFCKNLVNAGVSLEKVAVLAGHETLETTKIYCHPSMES 278


>gi|298250455|ref|ZP_06974259.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297548459|gb|EFH82326.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 350

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 77/321 (23%), Positives = 144/321 (44%), Gaps = 32/321 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+ L+     ++ T++ Y      FL++     +  +T  T+  ++    R  +  +RT
Sbjct: 15  WLEELQANDR-ARGTIRRYRSAVEGFLVWYECCEQRSLTFATLTPITLVGYRNDL--QRT 71

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTLVD 139
           Q+    ++   +S +++F  +L +      +   +++ + ++  S    L++ Q   L+ 
Sbjct: 72  QRRATSTVNGQISALRAFCAWLTEEHYLETNPARHLKLVGRQEVSSREGLDDAQVNALLR 131

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDK 196
                    T     RN AI+ +L   G+R+ E   LT  +I   + + R+   QGKG+K
Sbjct: 132 Q------ARTSRDPLRNYAIVQVLLQTGIRLDECSQLTLDDIELGERSGRVTIRQGKGNK 185

Query: 197 IRIVPLLPSVRKAILEYY--------------DLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
             +VPL  SVR+A+ EY                  P   + +  +PL+   +   L    
Sbjct: 186 ACMVPLNASVRQALAEYMASRLNCDPTVKAVARHWPAYSSDSPTIPLWLSQKKGILTTSA 245

Query: 243 FQRYIRQLRRYLG----LPLSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLSTTQI 297
            ++ I  L R       +P  T+AHTLRH+FA + L  + GDL  + S+LGH  L TT+I
Sbjct: 246 MRQMIDVLVRDTATRGLVPAQTSAHTLRHTFARNYLAEHPGDLVGLASLLGHTSLDTTRI 305

Query: 298 YTNVNSKNGGDWMMEIYDQTH 318
           Y+    +     + ++    +
Sbjct: 306 YSLPTLEQLSTRVEQLRQNAY 326


>gi|119714859|ref|YP_921824.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119535520|gb|ABL80137.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 412

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 67/311 (21%), Positives = 122/311 (39%), Gaps = 19/311 (6%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ++ + + E  S         W + + ++RGL++ ++  Y       L  +          
Sbjct: 108 LQADGVDEDRSTPTQVAAAQWCEWMRVQRGLTEKSIVRYRYYAVGLLDQVTTAD----GS 163

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            +  +L+ T I A+++  R +  G  +    +  ++  L++              +    
Sbjct: 164 VSWDRLNATMINAYVAD-RGRGYGVAAKAHVVGSVRCLLRWALSTGRLDRDLSAGILKPS 222

Query: 121 -KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
               SLPR +   Q   L+          T  I AR+ A++ +L   GLR  EA  L   
Sbjct: 223 GTKRSLPRGVTADQVAALL-----AVCDPTTAIGARDRALVLMLVRLGLRAGEAAHLMLD 277

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-- 237
           +I      +R+ GKG    ++PL   V +A+  +  L P  L+      +F  +R     
Sbjct: 278 DIDWAGGQVRVTGKGR-EHVLPLPVDVGQALEAWLRLRPEALDR----AVFVRLRAPRQM 332

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +        I +L    G+     AH LRH+ A  +L+ GG L   + +LGH    TT  
Sbjct: 333 MTASGTSGVIARLSSMAGIE-PIHAHRLRHTAAMDVLAAGGTLSEAKELLGHVYTVTTMT 391

Query: 298 YTNVNSKNGGD 308
           Y  V+  +  +
Sbjct: 392 YAKVDLASLRE 402


>gi|213579719|ref|ZP_03361545.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 167

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 8/175 (4%)

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
           +    +   K    LP+ ++      L+D  L         +  R+ A+L ++YG GLR+
Sbjct: 1   NPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRL 54

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
           SE + L  +++  D   + + GKG K R +P+  +    I  + DL    L  + +  LF
Sbjct: 55  SELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWLDLRG--LFASDEEALF 112

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
               GK ++    Q+   +     GL      H LRHSFATH+L + GDLR +Q 
Sbjct: 113 LSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQE 167


>gi|60115682|ref|YP_209473.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|168239749|ref|ZP_02664807.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194733830|ref|YP_002112908.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|45758240|gb|AAS76452.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|194709332|gb|ACF88555.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197287589|gb|EDY26981.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 325

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 70/316 (22%), Positives = 127/316 (40%), Gaps = 30/316 (9%)

Query: 14  LLKERQNWLQNLEIERG---------LSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTI 63
           L    + +L  L  E           LS  + +S       FL  +A       +   + 
Sbjct: 13  LPAASEEFLPALSGENAPVSPARAYLLSLNSHRS-RQTMASFLNIVAVMLGAASLESCSW 71

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--K 121
             L    + A     R       ++   LS +K   K     ++    +  ++R ++  +
Sbjct: 72  GSLRRHHVMAVTELLRDTGRATATVNTYLSALKGVAKEAWMLRLMDVESFQHIRAVRNLR 131

Query: 122 SNSLP--RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
            + LP  RAL + +   L          +   + AR++A+L ++ GCGLR SE +SL  +
Sbjct: 132 GSRLPSGRALPQGEIRALFAVCEA----DRSCLGARDAAMLAVILGCGLRRSEVVSLDLR 187

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK--- 236
           +++     LR+ GKG+K R+  +     + +  + D    ++      PLF  IR     
Sbjct: 188 DVVTQDRALRVLGKGNKERLAYVPAGAWQRLQIWID----EIRGETPGPLFTRIRRFGDV 243

Query: 237 ---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
               L        ++  +   G+    + H LR +FAT +L NG DL +++  +GH  ++
Sbjct: 244 TLNRLTDQAVYHILQVRQGQAGITK-CSPHDLRRTFATAMLDNGEDLITVKDAMGHASVT 302

Query: 294 TTQIYTNVNSKNGGDW 309
           TTQ Y     +   D 
Sbjct: 303 TTQQYDRRGEQRLQDA 318


>gi|251780937|ref|ZP_04823857.1| DNA integration/recombination protein [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243085252|gb|EES51142.1| DNA integration/recombination protein [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 338

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 70/329 (21%), Positives = 136/329 (41%), Gaps = 45/329 (13%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L+     + LS  T++SY     Q L+  + Y EE+  I+ I +++   +  +IS  +
Sbjct: 17  DYLEFCNY-KNLSLKTIKSY----HQCLMLFSKYLEEEKDIKDITKVNKNIVEEYISFTK 71

Query: 80  TQK-------------------------IGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
            +                          + + +L   L  IK+F  YL++  I   S I 
Sbjct: 72  ERGKYSYTSTIEGSIKANLHKRTDIGKEVSNSTLNNYLRNIKAFATYLEENNIVKNSRIH 131

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
             + +K         N++Q   +    L+     TK+ + R+  I+ L++  G+R+ E L
Sbjct: 132 ECKFIKTERR-----NKEQLTDVEYQKLVKCLDCTKFHEFRDYTIINLIFDTGMRLGETL 186

Query: 175 SLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            LT  ++   + T+ I     KG K R+V    ++ K +  +           +  P  R
Sbjct: 187 HLTANDVDLLRRTILIPADLTKGRKDRVVFFSMNMAKLLQRWLKFKDTMQETELLFPTQR 246

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
                 ++   F+R  R   +   +  + T H LR++F+   L +GG L  +  ILGH  
Sbjct: 247 TNGI--ISNPNFERNFRGYLKKSDIHKNITPHGLRNNFSRRFLLSGGSLMILSKILGHSS 304

Query: 292 LSTTQ-IYTNVNSKNGGDWMMEIYDQTHP 319
           +  T+  Y ++  ++    + + Y    P
Sbjct: 305 VKVTESAYLDLQDED----LRKKYQSYSP 329


>gi|226366647|ref|YP_002784430.1| tyrosine recombinase [Rhodococcus opacus B4]
 gi|226245137|dbj|BAH55485.1| putative tyrosine recombinase [Rhodococcus opacus B4]
          Length = 307

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 61/289 (21%), Positives = 121/289 (41%), Gaps = 14/289 (4%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
              +++ + L   +  S++T Q Y    R FL  +A    +      + QLS  ++R+++
Sbjct: 15  DAIKDFDRYLITGKNASEMTRQCYTRHARAFLNTVA----QSAAAVDLEQLSGPQVRSYV 70

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLPRALNEKQ 133
           +    ++   +SLK   + ++ FL++       +      +  +       +P+AL+  +
Sbjct: 71  TDL-GERYAPQSLKLKATALRIFLRFAWMSGQMSSDLTGAVGPVITHRSGKIPKALHPDE 129

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
            + L+                R+ A+L L+   G R  E   L   +I    + +R++ K
Sbjct: 130 LVRLL-----AAPDRHTLGGTRDYALLVLMSRLGFRAGEVGGLRLDDIDWAHAKVRVRVK 184

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G  +  +P+   V  A++EY    P     + ++ L       P+  G   + + +  R 
Sbjct: 185 GGNVLELPIPGDVGSALVEYLQRRPTP-TPHREVFLTNYGAPVPMTRGAVTQVVERNART 243

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            GL +   AH LRHS A  +L  GG    +  +LGH     T  Y++ +
Sbjct: 244 AGLGM-VHAHRLRHSAARAVLVGGGTFEEVGELLGHATRQVTMAYSSFD 291


>gi|168186351|ref|ZP_02620986.1| putative integrase/recombinase [Clostridium botulinum C str.
           Eklund]
 gi|169295760|gb|EDS77893.1| putative integrase/recombinase [Clostridium botulinum C str.
           Eklund]
          Length = 274

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 115/287 (40%), Gaps = 31/287 (10%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
            E   S  T+ SY  D  QF  ++    ++   I         E + ++     + +  +
Sbjct: 13  AENRKSSKTIDSYIRDINQFNEYIKSKKKKINKINN---SDIDEYKNYLIY--DRGLKIK 67

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNEKQALTLVDNVLLH 144
           ++ R L  I  F K+         +  +++R  K      L   L+ K    LV+     
Sbjct: 68  TINRKLVSINQFFKFN--------NIAVDIRQEKVQMQNFLDDILSNKDVQALVNATY-- 117

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
                K  D R   I+Y LY  G+R+SE L LT       + ++ I GKG K R V +  
Sbjct: 118 -----KKDDLRARTIIYTLYYTGMRVSEMLQLTI--YDTKKQSITILGKGAKHREVFIPN 170

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-STTAH 263
            ++     Y ++      +     LF G RG P+N       I++     G+      AH
Sbjct: 171 KLKDIWEAYMNVR-----IRKGTALFTGKRG-PINRKTVDSLIKEYAALAGVSKSKAHAH 224

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
             RH +  +L   G D+ +I  I GH  ++TT+IYT    +   D +
Sbjct: 225 NFRHLYCKNLADKGIDISTIADIAGHQNINTTRIYTRKTKEELLDII 271


>gi|161868003|ref|YP_001598184.1| Int2 [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|313116779|ref|YP_004032929.1| integrase/recombinase [Edwardsiella tarda]
 gi|161087382|gb|ABX56852.1| Int2 [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|312192416|gb|ADQ43902.1| integrase/recombinase [Edwardsiella tarda]
          Length = 363

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 70/316 (22%), Positives = 127/316 (40%), Gaps = 30/316 (9%)

Query: 14  LLKERQNWLQNLEIERG---------LSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTI 63
           L    + +L  L  E           LS  + +S       FL  +A       +   + 
Sbjct: 51  LPAASEEFLPALSGENAPVSPARAYLLSLNSHRS-RQTMASFLNIVAVMLGAASLESCSW 109

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--K 121
             L    + A     R       ++   LS +K   K     ++    +  ++R ++  +
Sbjct: 110 GSLRRHHVMAVTELLRDTGRATATVNTYLSALKGVAKEAWMLRLMDVESFQHIRAVRNLR 169

Query: 122 SNSLP--RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
            + LP  RAL + +   L          +   + AR++A+L ++ GCGLR SE +SL  +
Sbjct: 170 GSRLPSGRALPQGEIRALFAVCEA----DRSCLGARDAAMLAVILGCGLRRSEVVSLDLR 225

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK--- 236
           +++     LR+ GKG+K R+  +     + +  + D    ++      PLF  IR     
Sbjct: 226 DVVTQDRALRVLGKGNKERLAYVPAGAWQRLQIWID----EIRGETPGPLFTRIRRFGDV 281

Query: 237 ---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
               L        ++  +   G+    + H LR +FAT +L NG DL +++  +GH  ++
Sbjct: 282 TLNRLTDQAVYHILQVRQGQAGITK-CSPHDLRRTFATAMLDNGEDLITVKDAMGHASVT 340

Query: 294 TTQIYTNVNSKNGGDW 309
           TTQ Y     +   D 
Sbjct: 341 TTQQYDRRGEQRLQDA 356


>gi|295698025|ref|YP_003602682.1| putative Integrase/recombinase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295060137|gb|ADF64874.1| putative Integrase/recombinase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 325

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 75/323 (23%), Positives = 131/323 (40%), Gaps = 34/323 (10%)

Query: 14  LLKERQNWLQNLEIERG---------LSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTI 63
           L    + +L  L  E           LS  + +S       FL  +A       +   + 
Sbjct: 13  LPAASEEFLPALSGENAPVSPARAYLLSLNSHRS-RQTMASFLNIVAVMLGAASLESCSW 71

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--K 121
             L    + A     R       ++   LS +K   K     ++    +  ++R ++  +
Sbjct: 72  GSLRRHHVMAVTELLRDTGRATATVNTYLSALKGVAKEAWMLRLMDVESFQHIRAVRNLR 131

Query: 122 SNSLPR--ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
            + LPR  AL  ++   L          +   I  R++A+L ++ GCGLR SEA+ L   
Sbjct: 132 GSRLPRGRALPPEEIRALFGACEA----DDSSIGVRDAAMLGVILGCGLRRSEAVGLDLC 187

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK--- 236
           +I+ D+  LR+ GKG+K R+  +     + + ++ D    D+      PLF  IR     
Sbjct: 188 DIVTDERALRVLGKGNKERLAYMPAGTWQRLRKWID----DVRGEKDGPLFTRIRRFDTL 243

Query: 237 ---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
               L        ++  +R  G+      H LR +FAT +L NG DL +++  +GH  ++
Sbjct: 244 TNDRLTDQTVYHVLQVRQRLAGIAK-CAPHDLRRTFATSMLDNGEDLITVKDAMGHASVT 302

Query: 294 TTQIYTNVNSKNGGDWMMEIYDQ 316
           TTQ Y     + G   +    D+
Sbjct: 303 TTQQY----DRRGEARLRTARDR 321


>gi|111025561|ref|YP_707981.1| integrase/recombinase [Rhodococcus jostii RHA1]
 gi|110824540|gb|ABG99823.1| probable integrase/recombinase [Rhodococcus jostii RHA1]
          Length = 384

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 109/299 (36%), Gaps = 15/299 (5%)

Query: 17  ERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           E +  L +L  +RG   S  T++S        L  +       +   T   L    I  F
Sbjct: 90  EIRQLLTHLR-DRGHVASPHTIESARRAWNMLLRHVCDTGGIPVDKITFPMLDRACITGF 148

Query: 75  ISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           + + R  +     +  + L+ I+SF +Y    + T   ++ ++  +    + P       
Sbjct: 149 LEQTRAERNWTAATYNQRLACIRSFFEYAATAEPTLAIHLADLAGIPLMKA-PATKPVSH 207

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                   LL           R+   + L+Y    R +E LS    ++   + T+ + GK
Sbjct: 208 MSQQAIKALLAQPDPIIRTGLRDQFFMILMYDTAARDAEMLSAAIGDLDAQRLTIDLLGK 267

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNPGVFQRYIRQL 250
           G K R +P+          Y     F  +  +  PLF      R   ++     R IRQ 
Sbjct: 268 GSKPRRIPITKETAAHYRRY--TAAFHPDPQLGDPLFYTIHSHRKTRMSDDNAARIIRQH 325

Query: 251 RRYLG-----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            +        +P     H LRHS A HL   G  L  +   LGH    TT IY + ++K
Sbjct: 326 AQAAHRKCAEVPAGAHPHMLRHSRAMHLYQAGMPLALLTEWLGHADPETTLIYAHADTK 384


>gi|125623479|ref|YP_001031962.1| integrase-recombinase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124492287|emb|CAL97219.1| integrase-recombinase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070227|gb|ADJ59627.1| integrase-recombinase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 311

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 70/300 (23%), Positives = 133/300 (44%), Gaps = 23/300 (7%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +  +  + +L  L++    SK T+++YE    +F+ F      +++ I  I ++     +
Sbjct: 2   QFEQLVKEYLLELKLG-NYSKRTMETYEQHIDKFIDFYRKEICKEMDIYAINKM---HYK 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            FIS+     +    +   L   K+F  YL + ++   S + +++ LK++       N+ 
Sbjct: 58  LFISQLLDNSLRATYINAILKSNKAFYSYLIREQVLKTSPMDSIKLLKETKQALTTFNDD 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   +++    +T     +++ARN  I+ +L   G+RISE +++   +       +R+ G
Sbjct: 118 EVKAMLNVWNFNT-----YLNARNKCIIAVLADTGIRISELINIK--DSDLTDQYIRVLG 170

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLN---------LNIQLPLFRGIRGKPL-NPGV 242
           KGDK R+VP+   +   + +Y  L     N           +   LF G  G+ +     
Sbjct: 171 KGDKWRVVPISNELNYLLTKYKRLRDNHFNKIRNRNGKVRELDSELFLGKTGRSIKTITN 230

Query: 243 FQRYIRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            +  I Q      +  S   + H  RH +    L  G D+ +I  +LGH  LSTTQIY  
Sbjct: 231 IEVMITQTGLQANVRASVRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIYLQ 290


>gi|254827675|ref|ZP_05232362.1| tyrosine recombinase XerC subunit [Listeria monocytogenes FSL
           N3-165]
 gi|258600054|gb|EEW13379.1| tyrosine recombinase XerC subunit [Listeria monocytogenes FSL
           N3-165]
          Length = 291

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 67/258 (25%), Positives = 111/258 (43%), Gaps = 12/258 (4%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            ++  E R  +S  R + +   ++   ++ IK F  YL   K     N  +   +K + S
Sbjct: 43  DITKVEYRKILSSMRNR-LSKNTMYSYVNVIKRFYDYLIDFKFYNGKNPFSSSVVKITAS 101

Query: 125 LPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            P+  L E + L +     +               +   LY  G+R++E ++L   +   
Sbjct: 102 KPKNVLYEDEILDIYKIFDME-----DKTTGYQEFLFDFLYSTGIRLAEFINLNIYDFDF 156

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           +   + + GKG+K RIV    S+ + +L Y       +  + +   +  I          
Sbjct: 157 ENRVITVVGKGNKERIVVYNESLEQTMLSYLKARQAIMKFHRKSHSYFLIDFNTGQRLKA 216

Query: 244 QRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            R   ++ R   +       H LRHSFATHLL NG DLR IQ +LGH  +STT+IYT V 
Sbjct: 217 ARVYNEIIRVGDIVHRKIHPHMLRHSFATHLLENGCDLRYIQELLGHSSVSTTEIYTKVQ 276

Query: 303 SKNGGDWMMEIYDQTHPS 320
            K   + ++    + HP 
Sbjct: 277 LKQKQNTIL----KFHPR 290


>gi|312878202|ref|ZP_07738129.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795015|gb|EFR11417.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 324

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 58/301 (19%), Positives = 130/301 (43%), Gaps = 17/301 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ++ +  Q++L + E+ R LSK T+  Y+   + F+ F      ++ +++ +  ++   + 
Sbjct: 17  KIEEAIQDFLLDCEV-RSLSKWTIDFYKRTLKPFVFF-----GKQNSVEYVNDITKEMVN 70

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            +I+  +       ++   L G+++FL +LKK +     N + +  LK+   +    +++
Sbjct: 71  KYIAHLKDSIENTTTINTYLRGLRTFLNFLKKEEFLE--NEIEINMLKEEEKIKETYSDE 128

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
                   +      +  + + RN  ++  L   G R+S  +++   ++  +   + I+ 
Sbjct: 129 DIKK---LLKKPDLKKCSFAEYRNWVLVNYLLETGNRLSSVINIKVSDVDLENGIVTIKH 185

Query: 193 -KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            K       P+  ++ K + EY        NL     LF    G  +     ++ IR   
Sbjct: 186 SKNKSHYFSPISNTMCKILREYIATW----NLKEDDYLFPSQSGAQMTKNTIEKAIRDYN 241

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +  G+ L T+ H  RH+FA + +   G+   ++ +LGH  L  T  Y  + S++      
Sbjct: 242 KKRGVKL-TSIHAFRHTFAKNYIKTNGNPFKLKQLLGHKTLEITNRYVRLYSEDLKKDFE 300

Query: 312 E 312
           E
Sbjct: 301 E 301


>gi|114217149|dbj|BAF31251.1| integron integrase [uncultured bacterium]
          Length = 239

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 104/252 (41%), Gaps = 51/252 (20%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           +  ++LS +  F   +    +     +  +   + S  LP  L  ++   ++        
Sbjct: 1   TQNQALSALLFFYGLVLCTDL---PWLPEILRPRPSRRLPVVLTPEEVCRIL-------- 49

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS 205
              ++++  +     LLYG G+ I+E L L  +++  D  T+ ++ GKG + R + L  S
Sbjct: 50  ---RFLEGEHRLFAQLLYGTGMPITEGLLLRIKDLDFDHCTIILREGKGSEDRALMLPES 106

Query: 206 VRKAILE------------------------------------YYDLCPFDLNLNIQLPL 229
           +  ++ E                                    +     F  + +   P 
Sbjct: 107 LVPSLREQLSRARAWWLKDQAEGRNGVALPDALERKYPRAGHSWPWFWVFAHHTHSTDPR 166

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
              +R   +    FQR  ++  +  G+    T HTLRHS AT LL +G D+R++Q +LGH
Sbjct: 167 SGVVRRHHMYDQTFQRAFKRAVQQAGITKPATPHTLRHSLATALLRSGYDIRTVQDLLGH 226

Query: 290 FRLSTTQIYTNV 301
             +STT IYT+V
Sbjct: 227 SDVSTTMIYTHV 238


>gi|520404|gb|AAA64588.1| site-specific recombinase [Bacillus thuringiensis serovar
           morrisoni]
          Length = 306

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 61/311 (19%), Positives = 132/311 (42%), Gaps = 21/311 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI--TIQTIRQLS 67
           +S +      +++ +L  E  L   TL+ Y  D + F+ +      +    T+    +++
Sbjct: 7   ISIQATSLISDFISSLSQEGDLHTKTLKEYTSDLKDFVFWFENVWGKHAEDTLFHPIEVT 66

Query: 68  YTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
              I  +    + T+ +   ++ R ++ IK +  + K++ +   +   +++ +    + P
Sbjct: 67  ARTIARYRGHMQVTRLLKPSTINRRINSIKRYFDWAKQKGLVQTNYSKSIKFVPTEKTSP 126

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + +++K+   L+  V        K+   R+ A++  +   GLR  E   +  ++++  + 
Sbjct: 127 KRMSDKEEAALMHAV-------EKYGTLRDRAMIIFMLHTGLRSMEVCDVQIEDVIMRKR 179

Query: 187 TLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGV 242
              +    GK +K R VPL  + R A+ E+       L+   Q  LF   +  K L    
Sbjct: 180 GGYVVVRSGKRNKQREVPLNSTARCALEEHI-----RLSEISQSYLFPSSKTGKRLQERA 234

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +  +++  R   L    +AH LRH F   +      L  +  I+GH  L+TT IY    
Sbjct: 235 IRHILQKYIRLAKLE-GFSAHDLRHRFGYVMAER-TPLHRLAQIMGHDNLNTTMIYVRAT 292

Query: 303 SKNGGDWMMEI 313
            ++    + +I
Sbjct: 293 QEDLQGEVEKI 303


>gi|253771281|ref|YP_003034141.1| putative integrase/recombinase [Clostridium botulinum D str. 1873]
 gi|253721433|gb|ACT33725.1| putative integrase/recombinase [Clostridium botulinum D str. 1873]
          Length = 272

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 129/298 (43%), Gaps = 34/298 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +++ L  ++  SK T+ +Y+ D ++F+ +      E      I  ++  + + ++  
Sbjct: 5   LEKFIEYL-YQKDKSKKTIYTYKNDIKRFIEYFEKNKLE------INTINMRKFKDYL-- 55

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNEKQAL 135
                +  +++ R++  I+ FL+Y+    I       +++ +K      L   L   + +
Sbjct: 56  LEALLLSPKTVNRNIIAIRQFLEYIHINNI-------DIKMIKIQEQGFLEDTLTNDEVI 108

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            ++           K  D R  A +  LY  G+R+SEA+SL  ++I  D  ++RI GKG 
Sbjct: 109 RMI-------KETEKMHDLRAKAFICTLYYTGMRVSEAISLLSEDINKD--SIRILGKGG 159

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R + +   ++    +Y  +       N    LF G R   ++       +++      
Sbjct: 160 KYRDILIPKKLKNIWKDYMIVR-----ENNSDKLFTG-REGGISRFTALNIVKKYGHMAK 213

Query: 256 LPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           +       H  RH +  +L+  G  L +I+ + GH  +STT IYT  + K   D + +
Sbjct: 214 IKKDKVYNHAFRHLYCLNLVDRGIPLDAIKDLAGHKNISTTIIYTRKSKKQLLDIINQ 271


>gi|319760125|ref|YP_004124064.1| integrase family protein [Alicycliphilus denitrificans BC]
 gi|317119731|gb|ADV02219.1| integrase family protein [Alicycliphilus denitrificans BC]
          Length = 323

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 61/300 (20%), Positives = 120/300 (40%), Gaps = 14/300 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +E   + ++L   RGL+  + Q+   + R     L     E      I +L   ++R 
Sbjct: 23  VAEELLRYDEHLCNVRGLAARSRQN---NLRIVGWLLQQKFAE--CPVEIAKLRPEDVRR 77

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLPRALNE 131
           F++ +        +     S ++S+ +Y        ++    + +       ++PRAL  
Sbjct: 78  FLASQLDAHRTTSNASHLASSLRSYFRYRTTCGDRVDALTAVISSPVNWRLATIPRALKP 137

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            +   L++    +       +  R+ AI+      GLR  E   L   +I     T+ ++
Sbjct: 138 DEVERLLNYFTANL-----RLPKRDYAIVRCALDMGLRAGEIAHLMISDIDWRAGTVMLR 192

Query: 192 GKGD-KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           G    +  I+PL     +A+ +Y                 +  R  P+     Q+ I+  
Sbjct: 193 GTKSLRQDIMPLPMKTGQALADYLQHERPATRNPAIFVRQKEGRDCPITSMAIQKVIKHA 252

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              +GLP  ++AH LRH+ A  L+ NG  L+ +  +L H  L+TT IY  +++      +
Sbjct: 253 CCRVGLP-HSSAHALRHTLACRLVENGSSLKEVADLLRHRSLNTTLIYAKLDTLRIPRKL 311


>gi|317130968|ref|YP_004097250.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
 gi|315475916|gb|ADU32519.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
          Length = 291

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 71/305 (23%), Positives = 132/305 (43%), Gaps = 24/305 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
            LK   N+L++++     S+ T+ SY     QF  +L     ++  I  +  ++  EI+A
Sbjct: 3   YLKGFNNYLEDMD----KSERTIVSYLNTISQFSNWL----IKEKFIDDLSIVATREIKA 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +      +K    ++ + L+ IK+F K++ +  I  E     ++  K  N   + +   +
Sbjct: 55  YRQILL-EKYSPATVNQKLACIKTFYKFMTQTHIIKEDPAKYIKLQKVDNIKSQYMTRAE 113

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLRIQ- 191
            L ++         + K    +  AIL +L  CGLR SE  SLT   +  D+  TL ++ 
Sbjct: 114 ELRVM--------SKAKEKGIKAYAILMVLLKCGLRPSELSSLTLDCLFLDKEPTLLVKD 165

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQ 249
            K +K R VP+     KA+  + D       +       +F   R   L     QR +  
Sbjct: 166 SKRNKSRYVPIPMDTCKALNAWIDERNKSDKIYHTRSKYVFTSQRQDRLEVRAIQRVVEV 225

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +    G+        LR ++A  L+ N    L ++ +++GH  + TT  YT +N ++   
Sbjct: 226 IGIEAGVE--LYCIRLRATYANSLIQNANIPLSALATLMGHDSIQTTSRYTTINEQDKRR 283

Query: 309 WMMEI 313
           ++  I
Sbjct: 284 YVNSI 288


>gi|148265141|ref|YP_001231847.1| phage integrase family protein [Geobacter uraniireducens Rf4]
 gi|146398641|gb|ABQ27274.1| phage integrase family protein [Geobacter uraniireducens Rf4]
          Length = 290

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 123/294 (41%), Gaps = 42/294 (14%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSL 88
           GL++ + Q Y    R  ++F           +T   +S  E++ +   RR   K    +L
Sbjct: 17  GLAEGSQQCYTRAVRMLVLFYD---------KTPDLISEEELQEYFLHRRNVDKWSSGTL 67

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           +     I+ F + + +R      +I      ++S  LP  L++++   ++  V       
Sbjct: 68  RICYCAIRFFFEKVLRRDW----HIFGYLKAERSKKLPAVLSQEEIARILSCVRT----- 118

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR 207
                  N A L+ +Y CGLR+ E L L   +I  D+  + + +GKG K R+VPL P   
Sbjct: 119 -----PHNRAYLFTVYSCGLRLQEGLHLEVGDIDSDRMLIHVHRGKGAKDRMVPLPPPTL 173

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRG---------KPLNPGVFQRYIRQLRRYLGLPL 258
             + E++             P+F  +            PL        ++   R  G+  
Sbjct: 174 AVLREHWKSH------KNPRPIFPALGCGDKQGATAESPLAITTVVGAMKDAVRQAGITK 227

Query: 259 S-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
                HTLRH +ATHLL  G +LR IQ  LGH  + TT +Y ++  K   D + 
Sbjct: 228 RSVHIHTLRH-YATHLLEEGVNLRVIQRYLGHSSIETTMVYLHLTRKGHDDAVQ 280


>gi|218884315|ref|YP_002428697.1| phage integrase family protein [Desulfurococcus kamchatkensis
           1221n]
 gi|218765931|gb|ACL11330.1| phage integrase family protein [Desulfurococcus kamchatkensis
           1221n]
          Length = 321

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 69/326 (21%), Positives = 131/326 (40%), Gaps = 53/326 (16%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           + ++ + E+++E +  L+      G S+ T+++Y    + FL F        I  + +R 
Sbjct: 1   MLDLSNKEIVEEFKASLEA----SGASEETVKAYLSAIKDFLGF--------IGDKPLRD 48

Query: 66  LSYTEIRAFISKRRTQKIGDR----------SLKRSLSGIKSFLKYLKKRKITTESNILN 115
           ++  +I A+ + R      +R          +L      +K F ++L    + T      
Sbjct: 49  VTLRDILAWRNDRLRNGFPNRKISDKEKWLVTLHYYTLFLKRFFEWLGVNIVVT------ 102

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
              ++K ++    L++++   L +                +  +L LL   GLR  E L 
Sbjct: 103 --PVRKPHASINVLSDEEVEKLYNV----------ARTPLDKLVLRLLVDTGLRSRELLG 150

Query: 176 LTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           L  +++      +++   K  K R V       K +  +  L            L  G R
Sbjct: 151 LRVEDVNFHSRVIKVTSAKYGKERYVVATEETFKMLDAWIRLNG----------LMPGDR 200

Query: 235 GKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
              L      + +++L    G+ P     H LRH+FAT  L  G  L ++Q +LGH  + 
Sbjct: 201 LFNLTYSGLYKKLKRLATRAGIAPERVRPHVLRHTFATRALRRGLSLPALQRLLGHSDIK 260

Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHP 319
           TTQIY +++ ++      E  D+ HP
Sbjct: 261 TTQIYLHLSVEDLKKEYYEKMDK-HP 285


>gi|94985220|ref|YP_604584.1| phage integrase [Deinococcus geothermalis DSM 11300]
 gi|94555501|gb|ABF45415.1| phage integrase [Deinococcus geothermalis DSM 11300]
          Length = 369

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 70/307 (22%), Positives = 125/307 (40%), Gaps = 11/307 (3%)

Query: 14  LLKERQNWLQNLEIERGL-SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           L+     +++     +G  S LTL++Y    RQFL F       +   + + QLS  +  
Sbjct: 37  LIDLLNTYIRLKSSRKGRTSALTLKAYAESVRQFLAF---TGPPESPSRALNQLSAEDFE 93

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS---LPRAL 129
            ++   +   +   ++KR L G+++ +K L    +        +             RAL
Sbjct: 94  VWLLHLQEAGLKPNTIKRHLYGVRNLMKALVWANVLKADPSAGVSPPTDPTPAHAKKRAL 153

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            + Q   L+  +      E     +R++ +L L    GLR +E + L   ++     TL 
Sbjct: 154 TQAQMRALL-ALPGELHPEDSVQASRDALLLALGGTLGLRAAEIVGLDLADVDLATGTLT 212

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG--IRGKPLNPGVFQRYI 247
           ++GKG K R+VPL   V+  +  +             L +      RG  L+    +   
Sbjct: 213 VRGKGGKTRVVPLPAGVKALLQRWLPARQTVNPKVPALLVSLSSLNRGGRLSTDGARFIA 272

Query: 248 RQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
               R LGLP      HTLR +  THL     DL  +  +LGH  ++T+ IY  +++   
Sbjct: 273 HAYYRQLGLPPEMWGLHTLRRTAGTHLYRATRDLHVVADLLGHASVTTSAIYAKMDADVR 332

Query: 307 GDWMMEI 313
            + +  +
Sbjct: 333 REAVEAL 339


>gi|159901727|ref|YP_001547973.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894766|gb|ABX07845.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 326

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 79/331 (23%), Positives = 133/331 (40%), Gaps = 35/331 (10%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +P+  S  +      W  N   +  L+  T   Y    R+   + A      + +  +  
Sbjct: 1   MPQPESEPIESLIDRWWTNPGDD--LTAATRTRYRSALRRLCRWFAAAERRSLLLADLHP 58

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS- 124
           +S    R  +     Q     ++   LS I+++  +L  +     +    ++ +K++   
Sbjct: 59  ISLAGYREAL----KQTDAASTVNTHLSAIRTWCVWLVDQGYLATNPAQRLKLVKRTTPS 114

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
            P+AL+      L+         +      RN+AIL +L   G+RISE  +L   +I   
Sbjct: 115 APKALSPAHVNALLRQ------AQFTRYPLRNTAILQVLIQTGMRISECAALCWHDIQYG 168

Query: 185 QST---LRIQGKGDKIRIVPLLPSVRKAILEYY--------------DLCPFDLNLNIQL 227
           + +   L   GKG+ +R VPL  S R A+  Y                  P     + + 
Sbjct: 169 ERSGHALIRAGKGNTVRTVPLNESARCALASYVAPLLGVQPSLHKVARAWPQRQEGDPRC 228

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLG----LPLSTTAHTLRHSFATHLLSNG-GDLRS 282
           PL+   R   L+       I QL R       LP STT H+LRH+FAT  L+    DL  
Sbjct: 229 PLWTSERQHALSLREMSHMIHQLVRDTSARKLLPASTTPHSLRHTFATRYLARHPHDLVG 288

Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +  +LGH  ++TTQIY    ++     + +I
Sbjct: 289 LARLLGHRSITTTQIYIQPTAEQLAARVDQI 319


>gi|120611395|ref|YP_971073.1| phage integrase family protein [Acidovorax citrulli AAC00-1]
 gi|120589859|gb|ABM33299.1| phage integrase family protein [Acidovorax citrulli AAC00-1]
          Length = 352

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 70/307 (22%), Positives = 125/307 (40%), Gaps = 26/307 (8%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
             E GL+  +L++ +   R F  ++           +  + +  +++A+  + R  +   
Sbjct: 44  AAEEGLADDSLRALQIQLRCFNAWVLAREGR-----SWDRATADDLKAYFQEARELR-SA 97

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALTLVDNVLL 143
            +++     ++   ++ +   I   S    +  ++      L    +  Q   ++     
Sbjct: 98  ATVRLKRWVVQRLYRWARSEGIIDVSFESALIAVRATPPMRLTTVPSVDQMQRIL----- 152

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
                      R+ A L LLYG GLR +E L L     + D   +R+ GKG K R+V L 
Sbjct: 153 SLPDTGTPNGVRDRAALELLYGAGLRSAELLGLHVAQ-VPDAPGMRLMGKGAKERLVILG 211

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKP-LNPGVFQRYIRQLRRYLGLP 257
              R  I +Y  +    L            LF      P       +R + +    +GL 
Sbjct: 212 EHARYWIAQYKAVRRTLLGSGGHRATATNRLFVSTGIHPDYQYSQLRRMVGRYAAMVGL- 270

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            S T H+LRH+FA+HL  +   L++IQ +LGH  L+TT IY + + ++    +    DQ 
Sbjct: 271 -SLTPHSLRHAFASHLYQHKAPLKTIQLLLGHEHLATTTIYVSRHFEDDHKLL----DQH 325

Query: 318 HPSITQK 324
           HP   Q 
Sbjct: 326 HPRGGQH 332


>gi|2078344|gb|AAB54012.1| transposase-like [Mycobacterium gordonae]
          Length = 369

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 71/353 (20%), Positives = 132/353 (37%), Gaps = 75/353 (21%)

Query: 16  KERQNWLQNLE-IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
                +L  L  IER  S  T+++Y  D + +  FLA            R +   ++  F
Sbjct: 27  APVDRYLAYLTDIER--SPNTVKAYAHDLKDWFGFLAERG------LDWRAVRLDDVGEF 78

Query: 75  ISKRR---------TQKIG--------DRSLKRSLSGIKSFLKYLKK------------- 104
           ++  R          + +         +R L R LS + +F  +  +             
Sbjct: 79  VAWLRLPLAGPAWAGRGVAVVAAITARNRLLNRKLSAVGAFYTHAARDGVDVGTLLTSWQ 138

Query: 105 ------------RKITTESN-ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
                         I+  +     +  LK    LPR L   +   ++D            
Sbjct: 139 VGGARGGWRPFLHHISKGTPRSRRVIALKTPKKLPRVLAPNEVQAILDGCGR-------- 190

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---------KGDKIRIVPL 202
              R+  +  +LY  G+RI EAL L   +I   ++ + ++          K    R +P+
Sbjct: 191 --LRDRLLFAVLYDTGMRIGEALGLRHNDIAAAENEVTVRRRDNANGARAKSQTDRTIPV 248

Query: 203 LPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
             ++ +     +     DL+ + + + L+   +G PL  G     +R+LRR  G+     
Sbjct: 249 SSALIRLWPTTFTASYGDLDSDYVFVNLWGRPQGYPLTYGAVYDLVRRLRRRTGIDFD-- 306

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDWMMEI 313
            H LRH+ AT LL +G  +  +  +LGH  ++ TT  Y +++ ++    M   
Sbjct: 307 PHWLRHTAATRLLRDGVSIEVVAHLLGHAHVATTTTTYGHLSVEDARRVMERA 359


>gi|115379507|ref|ZP_01466601.1| tyrosine recombinase XerC [Stigmatella aurantiaca DW4/3-1]
 gi|115363485|gb|EAU62626.1| tyrosine recombinase XerC [Stigmatella aurantiaca DW4/3-1]
          Length = 182

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 90/190 (47%), Gaps = 11/190 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L    + +  +LE E+G S  T+++Y  D   F  +L    +      ++   ++  IR 
Sbjct: 4   LSPLLEKFRIHLEHEKGASPHTVRNYLIDLVDFEKYLVGTMK-----LSLLAGTHAAIRG 58

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++           S  R L+ IKSF KYL ++K+ + S    +++ K   SLP+ L   +
Sbjct: 59  YLGTLSVDH-APASRGRRLASIKSFYKYLVRQKLLSASPAKLVKSPKLPKSLPKVLPVDE 117

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              +++   L T      +  R+ AIL +LYG GLRISE   L   ++      +R+ GK
Sbjct: 118 VFAILEMPSLKT-----VLGLRDRAILEILYGGGLRISELCGLNLLDVDRSGRIVRVMGK 172

Query: 194 GDKIRIVPLL 203
           G K R+ P+ 
Sbjct: 173 GGKERLCPVN 182


>gi|38637707|ref|NP_942681.1| Orf2/integrase/recombinase fusion protein [Ralstonia eutropha H16]
 gi|32527045|gb|AAP85795.1| Orf2/integrase/recombinase fusion protein [Ralstonia eutropha H16]
          Length = 875

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 73/309 (23%), Positives = 125/309 (40%), Gaps = 14/309 (4%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
               +PE     +    Q +++ L   R LSK T+ +Y    R+FL     + + +I + 
Sbjct: 567 SAQRMPERRLTPIESCTQAYVEYLHEARALSKATIVNYVPFIREFLEDC--FGDGRIRLS 624

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-- 119
            +R     ++  F+ + +  ++  +  K   + ++SFL+Y   R   T      +  +  
Sbjct: 625 RLR---AGDVVNFV-QCQALRLHLKRAKLMTTALRSFLRYACYRGDMTLDLAAAVPVVAN 680

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
               S+PR +  +Q   L+ ++     +    +  R+ AI+ LL   GLR  E   L   
Sbjct: 681 WSMQSIPRGIPPEQIQQLLVSI-----NRRTAVGRRDYAIILLLARLGLRSGEVAFLELD 735

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           +I  +   L ++GK  +   +PL   V KAI  Y                 +        
Sbjct: 736 DIDWNTGVLSVRGKSGQRNGLPLPADVGKAIAAYLRDGRPQSTSRRVFLRAKAPVIGFRG 795

Query: 240 PGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                  +R   +  G+   TT AH  RH  A  +LS+G  L  I  +LGH    TT+IY
Sbjct: 796 ASGVGSIVRHSLQRAGIDAPTTGAHQFRHGLACQMLSHGASLSEIGELLGHHHPQTTKIY 855

Query: 299 TNVNSKNGG 307
           T V+ K   
Sbjct: 856 TKVDIKALR 864


>gi|228937164|ref|ZP_04099861.1| Site-specific recombinase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228822497|gb|EEM68429.1| Site-specific recombinase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 293

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 60/301 (19%), Positives = 129/301 (42%), Gaps = 21/301 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI--TIQTIRQLSYTEIRAFISK 77
           +++ +L  E  L   TL+ Y  D + F+ +      +    T+    +++   I  +   
Sbjct: 4   DFISSLSQEGDLHTKTLKEYTSDLKDFVFWFENVWGKHAEDTLFHPIEVTARTIARYREH 63

Query: 78  RR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            + T+ +   ++ R ++ IK +  + K++ +   +   +++ +    + P+ +++K+   
Sbjct: 64  MQVTRLLKPSTINRRINSIKRYFDWAKQKGLVQTNYSKSIKFVPTEKTSPKRMSDKEEAA 123

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGK 193
           L+  V        K+   R+ A++  +   GLR  E   +  ++++  +    +    GK
Sbjct: 124 LMYAV-------EKYGTLRDRAMIIFMLHTGLRSMEVCDVQIEDVIMRKRGGYVVVRSGK 176

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRR 252
            +K R VPL  + R A+ E+       L+   Q  LF   +  K L     +  +++  R
Sbjct: 177 RNKQREVPLNSTARCALEEHI-----RLSEISQSYLFPSSKTGKRLQERAIRHILQKYIR 231

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L    +AH LRH F   +      L  +  I+GH  L+TT IY     ++    + +
Sbjct: 232 LAKLE-GFSAHDLRHRFGYVMAER-TPLHRLAQIMGHDNLNTTMIYVRATQEDLQGEVEK 289

Query: 313 I 313
           I
Sbjct: 290 I 290


>gi|171915255|ref|ZP_02930725.1| integron integrase [Verrucomicrobium spinosum DSM 4136]
          Length = 260

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 64/266 (24%), Positives = 104/266 (39%), Gaps = 52/266 (19%)

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +   +  ++L+ +    + + KR++      +  +  K S  LP  L  ++   L+ 
Sbjct: 2   KRGVSASTQNQALNALVFLYRQVLKRELEN----IQAQRAKTSRHLPVVLAVEEIKVLL- 56

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR 198
                       +D   +    LLYGCGLR+ E L L  +++      + ++ GKG K R
Sbjct: 57  ----------AVMDGVEALQAGLLYGCGLRVMELLRLRIKDVDLAGGKIEVRDGKGGKDR 106

Query: 199 IVPLLPSVRKAILE------------------------------------YYDLCPFDLN 222
           +V L  S   A+                                      +     F  +
Sbjct: 107 VVCLPGSAMAALQRQMERAKRVYEQDEMANLSPVWLPDAYATKNPSAGKSWPWFWLFPAD 166

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
                P    +R    +     R +    +  GL    TAHT+RHSFATHLL  G D+RS
Sbjct: 167 KLATDPRSGTLRRHHSHEQRLGRALSLAAKRAGLAKKVTAHTMRHSFATHLLLRGVDIRS 226

Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGD 308
           +Q +LGH  + TT+IYT +     GD
Sbjct: 227 VQELLGHADVRTTEIYTQLARAMRGD 252


>gi|15672627|ref|NP_266801.1| integrase-recombinase [Lactococcus lactis subsp. lactis Il1403]
 gi|12723549|gb|AAK04743.1|AE006297_6 integrase-recombinase [Lactococcus lactis subsp. lactis Il1403]
          Length = 312

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 73/304 (24%), Positives = 134/304 (44%), Gaps = 25/304 (8%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++ FE L   + +L  L++    SK T+  YE    +F+ F      +++ I  I ++  
Sbjct: 1   MMQFEQL--VKEYLLELKLG-NYSKKTMAVYEQHIDKFIDFYKKEICKEMDIYAINKM-- 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
              + FIS+     +    +   L   K+F  YL + ++   S + +++ LK++      
Sbjct: 56  -HYKLFISQLLDNSLRATYINAILKSNKAFYSYLIREQVLKTSPMDSIKLLKETKQALTT 114

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
            N+ +   +++    +T     +++ARN  I+ +L   G+RISE +++   +       +
Sbjct: 115 FNDDEVKAMLNVWNFNT-----YLNARNKCIIAVLADTGIRISELINIK--DSDLTDQYI 167

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN---------LNIQLPLFRGIRGKPL- 238
           R+ GKGDK R+VP+   +   + +Y  L     N           +   LF G  G+ + 
Sbjct: 168 RVLGKGDKWRVVPISNELNYLLTKYKRLRDNHFNKIRNRNGKVRELDSELFLGNTGRSIK 227

Query: 239 NPGVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
                +  I Q      +  S   + H  RH +    L  G D+ +I  +LGH  LSTTQ
Sbjct: 228 TITNIEVMITQTGLQANVRASVRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQ 287

Query: 297 IYTN 300
           IY  
Sbjct: 288 IYLQ 291


>gi|134299674|ref|YP_001113170.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134052374|gb|ABO50345.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 283

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 53/298 (17%), Positives = 111/298 (37%), Gaps = 22/298 (7%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +   + +   L  +   S  T++SY      +  +        I+   + + +  + +++
Sbjct: 1   MSGIEEFKSYLLNQD-KSINTIKSYVSHVEDYSRWFQESFG--ISFTKLYRENILDFKSY 57

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--PRALNEK 132
           +     + +  +S+   L+ +    +++  + I  +  +     +K       P  +  +
Sbjct: 58  L--LNIKNLNAKSINAKLAALMKLNEFILSKNIQEDIVVFKTDYIKVQTEYASPAIITRQ 115

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ- 191
              +    +L + S         + AI+ LL   G+RISEA++L   ++      + ++ 
Sbjct: 116 DVESFRQTILENESKR-------DYAIVTLLAYSGMRISEAVNLKLSDVNLTAREIVVRY 168

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG K R+V +   V  AI  Y        N + +  LF       ++            
Sbjct: 169 GKGKKQRLVIINDKVVNAIKTYLSERTKLRNRDSE-YLFVSRESCRISRTRINHIFNGY- 226

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                    T H LRH F ++ L  G  +  +    GH  + TT IYTN + +     
Sbjct: 227 -----SDKITPHMLRHFFCSYALEKGWSVHEVAGQAGHANIHTTLIYTNPSMEEMKRK 279


>gi|152990726|ref|YP_001356448.1| phage integrase family site specific recombinase [Nitratiruptor sp.
           SB155-2]
 gi|151422587|dbj|BAF70091.1| site-specific recombinase, phage integrase family [Nitratiruptor
           sp. SB155-2]
          Length = 353

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 68/283 (24%), Positives = 126/283 (44%), Gaps = 22/283 (7%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y     +    L       + + +++++    I  F++   T  + D + K     +
Sbjct: 73  VNTYYKPLEKLYKHLTA-----LGLASMQEIDEEMIIDFLTS-STAGLSDATKKNYRIAM 126

Query: 96  KSFLKYLKKRKITTESNILNMRNL-----KKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +F +Y+ K         + ++N      K    LP  L+E +    +  +  +      
Sbjct: 127 INFFRYIDKNNEDKHLYEIELKNWGGLKGKAGQKLPVFLSEDEITKFLHAIDTYPFRPD- 185

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLL-PSVR 207
            + ARN AI+ ++   G+R+SEA++L  +NI+  +    L+I GKG+K R+V +    +R
Sbjct: 186 -VAARNRAIIKMILYTGIRVSEAMNLEMKNIILQKDVYLLKITGKGNKARVVMIKAQKIR 244

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLR 266
           K + E+      +  L     LF   +G PL      R + ++    G+      AH LR
Sbjct: 245 KDLEEWLTKRNCEKGL-----LFCNKKGSPLTQAYISRMVEKILLSCGIRKEKNGAHMLR 299

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           H+FAT L +   DL  +Q  LGH  L T++IYT+ + +     
Sbjct: 300 HTFATLLYNKSKDLVLVQESLGHASLDTSRIYTHFDKEKLSKA 342


>gi|126657051|ref|ZP_01728222.1| phage integrase [Cyanothece sp. CCY0110]
 gi|126621594|gb|EAZ92304.1| phage integrase [Cyanothece sp. CCY0110]
          Length = 359

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 63/355 (17%), Positives = 140/355 (39%), Gaps = 69/355 (19%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
            +++++  Q +L  L   +  S  T++SY    + +  FL             +++  T+
Sbjct: 24  DYQVVEPIQRYLTFLSGTK--SPNTVESYGYGLKAWWEFLQSKN------LDWKEVQLTD 75

Query: 71  IRAFISKRR-------------TQKIGDRSLKRSLSGIKSFLKYLKKR------------ 105
           +  F+   R               K  +RS+  +L+ + +F +Y                
Sbjct: 76  LEDFVHWLRIGDTSNIVSMQPVKAKRSERSINLALTAVTTFYEYHDAHKNIDPKKFDRLI 135

Query: 106 ------------KITTESNIL-NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
                        I+        +  LK+    P  L ++Q  TLV+N            
Sbjct: 136 TTRGNTRRGLLDGISKSKPTRQKLVKLKEPKKFPGCLTDEQVETLVNNC----------H 185

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGK--------GDKIRIVPLL 203
             R+  ++ LL G G+R+ E L L  +++       + ++ +          + R +P++
Sbjct: 186 RLRDKFLILLLNGTGIRVGELLGLQHEDVGDGSDYFIHVRKRRHGNEARAKGQERTIPVI 245

Query: 204 PSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           P + +   +Y      ++  N + + ++ G  G P+   V      +L +  G+      
Sbjct: 246 PELLQMYNDYLIYEYPEVESNYVFVNIWEGAIGMPMKAPVINTMFTRLSKKTGI--KVYP 303

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQ 316
           H  RH++AT LL  G  +  ++ +LGH  + TT  IY+++  +   + ++++ ++
Sbjct: 304 HLFRHTYATRLLKAGMRVDRVKYLLGHASVQTTLDIYSHIIDEADLNSVIKLEEE 358


>gi|259419368|ref|ZP_05743284.1| putative transposase A [Silicibacter sp. TrichCH4B]
 gi|259344609|gb|EEW56496.1| putative transposase A [Silicibacter sp. TrichCH4B]
          Length = 369

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/341 (19%), Positives = 118/341 (34%), Gaps = 64/341 (18%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +   ++L+ L   RG S  T++SY  D R+   F      E         +         
Sbjct: 25  EPIHDFLRYL-YARGSSPNTIRSYAYDLRRVWEFFEARGLEWQGFNISNAVDLIACLHDR 83

Query: 76  SKRRTQ---------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN-------- 118
              R           ++   ++ R+L+ + SF  +     + T  N + +          
Sbjct: 84  IDLRAGRLTTSSGPDRLSPATVNRALAAMSSFCDWAIIAGLLTPPNPMRVSKSINKPSVT 143

Query: 119 ---------------------LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
                                ++  + LPR +++ Q   L+           +    R+ 
Sbjct: 144 DRHRPFFEGISRRSASVRVIRVRSVHRLPRPMSDDQIKRLL----------AEVTSLRDR 193

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----------QGKGDKIRIVPLLP-SV 206
           A++ L+   GLR  EALSL  ++I   +  + +          +GK    R+V L     
Sbjct: 194 ALVLLMLHGGLRPGEALSLHLEDIAYGRRRVTVRCRADHPKGARGKSRVERVVDLHDGQA 253

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRG---IRGKPLNPGVFQRYIRQLRRYLGLP-LSTTA 262
             AI  Y             + L  G    R +PL+     +   +     G+     T 
Sbjct: 254 LDAISGYVMRDRPRETDTPFIFLVGGNGTRRSEPLSYAALAKAFARAAERAGIKSPGVTP 313

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           H LRH+ AT +   G    ++Q  LGH    +T+IYT V+ 
Sbjct: 314 HALRHTHATRMWEAGMRELTLQRRLGHASPESTRIYTRVSD 354


>gi|219848551|ref|YP_002462984.1| integrase domain-containing protein SAM domain-containing protein
           [Chloroflexus aggregans DSM 9485]
 gi|219542810|gb|ACL24548.1| integrase domain protein SAM domain protein [Chloroflexus aggregans
           DSM 9485]
          Length = 317

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/312 (21%), Positives = 122/312 (39%), Gaps = 32/312 (10%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           + N   +  +  +L E +N+L  L  E  LS+ T+ SY CD R   + L          Q
Sbjct: 3   DANGFGQQPARTILGELENFLAELRQEDRLSENTITSYRCDLRTAGLALC---------Q 53

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            +  ++  +I+ F++ R+ Q     +  R ++ +  F ++ K+R   T + +  +     
Sbjct: 54  ELSTITAHDIQQFLAGRKEQ---PGTTNRRIASLNRFFRWAKERGYVTHNPVEQIGGRLP 110

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           +   P+ +  +  L  +D  +                I  LL   G+R  E L+L   ++
Sbjct: 111 TEHRPQPIANEHELRALDQAIAAAPQP-------YRLIFTLLREIGIRTDEVLNLNLGDV 163

Query: 182 MDDQST---LRIQGKGDKIRIVPLLPSVR-KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
           + +      L    K    R++ L P    +++           +L    PLFR  RG  
Sbjct: 164 ILEPGREMLLVRDSKSGSKRMIALTPDAMPRSLRGLRHWVREMDHLPPDTPLFRSSRGTR 223

Query: 238 LNPGVFQRYIRQLRRYLGL--------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
            +     R    + R   L            T H LRH+ AT L+      + ++ ILGH
Sbjct: 224 ASYDTLHRRWVAVCRAARLIDVVDGREQPRYTLHHLRHTAATKLV-AFYPEQVVRRILGH 282

Query: 290 FRLSTTQIYTNV 301
               +T+ YT +
Sbjct: 283 RDPRSTRRYTEL 294


>gi|291276943|ref|YP_003516715.1| DNA recombinase [Helicobacter mustelae 12198]
 gi|290964137|emb|CBG39982.1| DNA recombinase [Helicobacter mustelae 12198]
          Length = 354

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 65/279 (23%), Positives = 123/279 (44%), Gaps = 18/279 (6%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y     +F  ++A        + +++++    +  F++   T  +  ++ K     +
Sbjct: 74  INTYANPLMKFYEYIAQK-----NLSSLKEIDEEVLNDFLA-IYTSALSTQTRKNYRIAL 127

Query: 96  KSFLKYLKKRKITTESN------ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
                Y+  +     S        L +     S  LP  L +++    ++ +    ++ +
Sbjct: 128 LGLFGYIDGQNEIAPSQSYIFGITLKIPIKNASPKLPAYLKKEEIEGFLNAL---QNYPS 184

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVR 207
             +  R+ AI+ L+   G+RISEAL L  +++    D   L ++GKGDK R++ + P V 
Sbjct: 185 TPMFCRDRAIIKLIIYTGMRISEALYLGLKDLRLEGDFYLLNVRGKGDKTRVLMVRPRVL 244

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-STTAHTLR 266
           +  L+ +      +       LF    G PL+     R +  + +Y G+      AH LR
Sbjct: 245 QEDLKQWLTERAKIPTIEHHLLFCNKHGAPLSQAYIYRMVDSILQYAGIKKEKMGAHMLR 304

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           HSFAT L     DL  +Q  LGH  L T++IYT+ +  +
Sbjct: 305 HSFATLLYQKHKDLILVQETLGHASLDTSRIYTHFDKDH 343


>gi|237717514|ref|ZP_04547995.1| phage integrase [Bacteroides sp. 2_2_4]
 gi|229453183|gb|EEO58974.1| phage integrase [Bacteroides sp. 2_2_4]
          Length = 407

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 70/308 (22%), Positives = 127/308 (41%), Gaps = 17/308 (5%)

Query: 6   LPEIVSFELLKER-QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           LPE  S  +   R   +L +L   R  S   ++        F   +    +E        
Sbjct: 96  LPESGSPSISDIRINEYLNHLAY-RRYSHAYIKGRRYILTYFYKIIEKENQEHP------ 148

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--S 122
            L+  +I  +I      ++   +LK  L  I+ +L+Y  ++          +   K    
Sbjct: 149 -LTLEDIDKYIEYYTINQVQRNTLKEYLCCIRVYLRYAVEKGWCIADLDKALITPKVYSE 207

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            +LP  L   +   L+  V      +T    +R+ AI  LL   GLR SE  +L   +I 
Sbjct: 208 ENLPSFLPWDKVQKLLQTV----KEQTGKSASRDYAIFMLLAMYGLRCSEVANLKLSDID 263

Query: 183 DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
             +  + I + K  + +I+PLL +V +AI++Y      +   +  L        +P++  
Sbjct: 264 WRKEQIYIKRAKNCRPQILPLLHNVGEAIIDYLKNGRPNEVDSDSLFFCAPAPIRPISCN 323

Query: 242 VFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                + +  +Y G+       H+LRHS AT L++ G  L+ +  +LGH  +  T++Y  
Sbjct: 324 AIASVVYRYLKYSGINIKHKGPHSLRHSHATFLINEGQTLKDVGDLLGHKSMEATRVYAK 383

Query: 301 VNSKNGGD 308
           V+  +  D
Sbjct: 384 VDLNSLRD 391


>gi|327537283|gb|EGF24020.1| phage integrase family protein [Rhodopirellula baltica WH47]
          Length = 286

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 119/293 (40%), Gaps = 32/293 (10%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSL 88
           G +K T   Y    RQ   F            +  Q++   +R F    +  +     SL
Sbjct: 5   GKAKRTHDGYIRAVRQLSDFAGC---------SPEQVTEQHVRQFFLHLKNDRNFAYGSL 55

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           + + SGIK F  +  KR       I+ M  L+   +LP  L  +Q   L+          
Sbjct: 56  RVAFSGIKFFFTHTCKRDW----EIIKMLKLQNITTLPEVLTIEQVHELI---------- 101

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR 207
                 R     + +Y  GLR++EAL L   +I  ++  + + +GKG K R VPL  +  
Sbjct: 102 GSATTQRMFVYFWTVYSLGLRLNEALHLQVSDIDAERGWVHVHRGKGAKDRYVPLPTTTV 161

Query: 208 KAILEYYDLCPF-------DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           + +  Y+            D   +            P++    Q  ++Q+ + L      
Sbjct: 162 RLLRNYWASHRHPCLLFPADGRKHDLAKDGVSQATTPMSETAVQGAMKQITKNLRFGKKV 221

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           + HTLRHS+ATHLL +G  L+ IQ  LGH  L TT +Y ++      +   EI
Sbjct: 222 SIHTLRHSYATHLLESGVGLKVIQRYLGHSSLQTTLVYLHLTDTAEANAREEI 274


>gi|158312286|ref|YP_001504794.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158107691|gb|ABW09888.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 304

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 70/307 (22%), Positives = 118/307 (38%), Gaps = 22/307 (7%)

Query: 1   MEGNNLPEIVSFE--LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI 58
           ME    P  V  +  LL E + WL     ERGLS ++++ Y   ++ FL  +        
Sbjct: 1   MEMGVDPGCVQPDVALLVEFRGWLDR---ERGLSPVSVRCYAKQSKVFLAGIG------- 50

Query: 59  TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
               +  L   ++ AF+    T      S K  ++ +++FL++      T  S    +  
Sbjct: 51  GAGAVSGLDAGKVTAFMVA-WTAGRNTWSAKAMVTSLRAFLRFAHATGRTAVSLAGAVPA 109

Query: 119 LKKSN--SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           +      +LPR L   +   L+             +  R+ A+L LL   GLR +EA  L
Sbjct: 110 VASWRMSALPRGLKASEIERLLTGC-----DRDTAVGLRDYAVLSLLARLGLRSAEAAGL 164

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
              +I      + + GKG +   +PL     +AI  +               +      +
Sbjct: 165 RLDDIDWRAGEIAVTGKGSRTERLPLPAPAGEAIAAWLTGGRPRCESRSVF-VTVRRPYR 223

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           PL P   +  + +     GL    T H  RH+ AT +L  G  L  +  +L H    +T 
Sbjct: 224 PLTPESVRAVMGRACERAGLERRGT-HRFRHALATEMLRAGASLPEVGQVLRHRSQLSTS 282

Query: 297 IYTNVNS 303
           +Y  V+ 
Sbjct: 283 LYAKVDQ 289


>gi|71733392|ref|YP_273045.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71553945|gb|AAZ33156.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 318

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 66/277 (23%), Positives = 112/277 (40%), Gaps = 24/277 (8%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T ++Y+ D R+F  F+     E+      R ++   + A+ ++   + +   +++R L
Sbjct: 38  PRTRRAYQADLREFCSFVDLAGAEE-----FRVVNRAHVLAWRAQLERRALSGATIRRKL 92

Query: 93  SGIKSFLKYLKKRK-ITTESNILNMRNLKKSN---SLPRALNEKQALTLVDNVLLHTSHE 148
           + + S   YL     +   + +  +            P AL   Q   L+D        +
Sbjct: 93  ATLASPFDYLLDNNALAGGNQVHGVARPPVETNEGKTP-ALGGDQTKRLLD-----APDD 146

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSV 206
                 R+ AIL +L   GLR  E   L   ++ + +    LRI GKG KIR +PL P  
Sbjct: 147 ESLQGVRDRAILAVLLYQGLRREELSLLQTGDLQERRGVKHLRIHGKGGKIRYLPLHPVA 206

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLP-LSTT 261
            + I  Y  L            LFR +RGK     +        + +      +      
Sbjct: 207 AERI--YVYLVRDGDRAQTPGALFRSLRGKTSGTGITGKGVYGVVSKWASAAQIHVDGLG 264

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            H LR + AT+ L +  D+  +Q  LGH  +STT++Y
Sbjct: 265 VHGLRATAATNALEHDADIAKVQIWLGHANISTTRLY 301


>gi|260893051|ref|YP_003239148.1| integrase family protein [Ammonifex degensii KC4]
 gi|260865192|gb|ACX52298.1| integrase family protein [Ammonifex degensii KC4]
          Length = 311

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 65/316 (20%), Positives = 120/316 (37%), Gaps = 29/316 (9%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +   L    + +L   + + GL++LTL +Y      F+ F          +    +L   
Sbjct: 7   IRLSLPDLLEEFLLARKAD-GLAELTLSTYRKIVTAFVRFCG-------PLVGYEELRRA 58

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            IR F      +          L  +K+F  +  +      + +  +R  K+  S  R  
Sbjct: 59  AIRYF-----ARPSSPGYHNIKLRHLKAFFNWCVREGHLPANPLEGIRKAKEDLSRVRHA 113

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
             +    L+            +   R+  +L      G R  E L +TP ++      L 
Sbjct: 114 PLEALKRLL-----AQPDRKTYAGLRDYCLLLTQLDTGARPGELLRVTPSDLNLAARELH 168

Query: 190 IQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           I+    K    R + + P   +A+       P       ++PLF    GKP+NP  +   
Sbjct: 169 IRPEVAKTRVGRTLVVSPLTAQALARLLRARPSW--WGEEVPLFASETGKPMNPTYWAER 226

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +R+  +  G+    T + LRH+FA   L    D  ++Q +LGH  LS T+ Y     ++ 
Sbjct: 227 VREYCQRAGV--KVTPYGLRHTFALEFLKASNDPFALQRVLGHRDLSMTRRYVRYLQED- 283

Query: 307 GDWMMEIYDQTHPSIT 322
              + +I+++  P + 
Sbjct: 284 ---VRQIHEKASPVVK 296


>gi|256371427|ref|YP_003109251.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008011|gb|ACU53578.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331]
          Length = 332

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 77/303 (25%), Positives = 121/303 (39%), Gaps = 30/303 (9%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + L     L   T + Y           A      +   +  QL    +R  ++   +  
Sbjct: 55  EFLAENVQLRPATRRRYRVVLSNIQARAA-----SLGAASPAQLDAHVLRRLLAAPGSNG 109

Query: 83  -IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                +       ++ +L +         +  L     ++   LPR ++E    + +D +
Sbjct: 110 PYAPATRDLERVVLRRYLVWEGSEGALALAAQLAAFARRRPRPLPRGIDETTLGSTLDGL 169

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV 200
                            IL L Y  GLR SE  +L   ++      L ++ GKG + R V
Sbjct: 170 DARADARAMA-------ILELAYATGLRASELCALDRSDLGPGDRWLVVRAGKGGRTRRV 222

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+  + R A+  Y      D        L  G RG  L+P   QR  R+           
Sbjct: 223 PIGEAARTALRAYLATRDDDA-----PALLLGARGARLSPRGLQRLTRRYL-------DV 270

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
             H LRH+FATHLL +G D+RSIQ +LGH RL+TT+IYT+V+     + +  +YD THP 
Sbjct: 271 HPHQLRHAFATHLLDHGADVRSIQELLGHARLATTEIYTHVS----RETLTRVYDATHPR 326

Query: 321 ITQ 323
             +
Sbjct: 327 AGR 329


>gi|34557587|ref|NP_907402.1| integrase-recombinase protein XERCD family [Wolinella succinogenes
           DSM 1740]
 gi|34483304|emb|CAE10302.1| INTEGRASE-RECOMBINASE PROTEIN XERCD FAMILY [Wolinella succinogenes]
          Length = 363

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 76/305 (24%), Positives = 134/305 (43%), Gaps = 26/305 (8%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y     +    L++     + + +++++    +  ++    T  + D S K     +
Sbjct: 73  INTYVNPLIKLYERLSY-----LGLASMKEIDEEMLSDYLV-IATSGLSDASKKNHRIAL 126

Query: 96  KSFLKYLKKRKITTESNILNMR---------NLKKSNSLPRALNEKQALTLVDNVLLHTS 146
            SF  Y+ K+    + N    R           K    LP  +NEK+    ++   L + 
Sbjct: 127 LSFFGYIDKQNQDDQGNSHLFRIELKNWGGLRGKSGEKLPAYMNEKELERFLEA--LDSY 184

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLP 204
             +  I ARN  ++ L+   G+R+SEAL L  ++     D   L+I+GKG+K R+V +  
Sbjct: 185 EFSLDIRARNRLVIKLILYTGIRVSEALGLRLKDFLPDQDSYLLKIRGKGNKERMVMVKK 244

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AH 263
              +  L+ +      LN   +  LF   +G  L      R + Q+  + G+      AH
Sbjct: 245 EPIQKELDEWLGVRQSLNAQ-EDWLFCNQKGGRLTQAYVSRIVEQILLWAGIRKEKNGAH 303

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            LRHSFAT L     DL  +Q  LGH  L+T++IYT+ + +   +    + D     +T 
Sbjct: 304 MLRHSFATLLYQKKRDLVLVQEALGHADLNTSRIYTHFDRERLREAASLMDD-----LTP 358

Query: 324 KDKKN 328
           K K+N
Sbjct: 359 KKKEN 363


>gi|218666422|ref|YP_002425617.1| tyrosine recombinase, phage integrase family [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|218518635|gb|ACK79221.1| tyrosine recombinase, phage integrase family [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 301

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 63/287 (21%), Positives = 108/287 (37%), Gaps = 27/287 (9%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD-RSLK 89
            SK T++ Y  +  +FL FL F       ++ I + S   +R F+   ++       +  
Sbjct: 24  YSKATIRIYGRNVHRFLEFLDFD-----GVERISEASIHLVRKFVMTGQSGGTAPVNTQN 78

Query: 90  RSLSGIKSFLKY---LKKRKITTESNILNMRNLKKSN----------SLPRALNEKQALT 136
                +  F  Y    ++    + +    +   +K             L   L       
Sbjct: 79  VRTGALALFFDYLESTEEHGPFSGNPARALIEDQKHKKGGNVGKATARLRPVLEWDDMDR 138

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQGKGD 195
           L        S +      R++A++  ++  GLR SE  +L         Q  LR+ GKGD
Sbjct: 139 L----QYEASKQETIAGIRDAALIGFIFDTGLRASEICALPHSAAEYYFQGRLRVIGKGD 194

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R+V   P     +  +         ++    LF    G  L+  V    +R+L    G
Sbjct: 195 KERLVRFTPEHADRLRAWI--RTRARVVSKSDALFLTDEGNALSTQVLYMIVRRLLDRAG 252

Query: 256 LPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +       H LRH+ A+  L+ G DLR +Q  +GH  + TT  Y ++
Sbjct: 253 IQKAQQGPHLLRHTAASRWLAKGMDLRQVQENMGHSNIGTTSKYLHL 299


>gi|67077924|ref|YP_245544.1| integrase-recombinase protein [Bacillus cereus E33L]
 gi|66970230|gb|AAY60206.1| integrase-recombinase protein [Bacillus cereus E33L]
          Length = 285

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 69/304 (22%), Positives = 135/304 (44%), Gaps = 35/304 (11%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L E + +L     E+G    T+  Y      F  +L           +I  ++  +I+ +
Sbjct: 13  LGEFERFL----FEQGKRPNTVHDYSRHICNFHRWLVTEG------SSIHDITRYDIQQY 62

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I+    Q     ++    S I +++K++ K K+      L +R+++  N  P++L++KQ 
Sbjct: 63  INFLSIQGNQATTITPKYSAIVAYMKFVGKEKLLNHIKRLEVRHIR--NISPKSLSKKQR 120

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQ- 191
             L+  V        K  + RN AI+Y +   G+R+ E ++L   +  + +    + I+ 
Sbjct: 121 NQLLREV-------EKSQNLRNIAIVYTMLYTGVRVFELVALNRDDVEMKERSGFIIIRD 173

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG   R +PL    R  +  Y          ++++PLF     K L+    QR   Q  
Sbjct: 174 GKGGISRKIPLPAESRYHLQNYLQKR-----TDLEVPLFLSNFRKRLSKRSAQRIFEQY- 227

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
                     AH LRH++   L+++G DL ++  ++GH  ++TT+ Y   +  +    + 
Sbjct: 228 -------GIGAHMLRHTYGRELVASGIDLATVADLMGHNDVNTTKRYAAPSMSDLEQAVE 280

Query: 312 EIYD 315
           +I++
Sbjct: 281 KIFN 284


>gi|13959816|gb|AAK49012.1| USC7-1p [Myxococcus xanthus]
          Length = 168

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 60/171 (35%), Positives = 87/171 (50%), Gaps = 13/171 (7%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +L L+Y  GLR+SE + L    +   Q  LR+ GKG K R+VPL    +  +  Y     
Sbjct: 1   MLELMYAAGLRVSELVLLPATAVNLRQGVLRVTGKGSKERLVPLGEESQHWLERYLQQSR 60

Query: 219 FDLN--------LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSF 269
             L          + Q PLF       L    F   +++  +  G+ P   + H LRHSF
Sbjct: 61  PQLVGKGRVHALADGQTPLFIEPTLHALTRQAFWHLVKRHAQVAGIDPARISPHGLRHSF 120

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           ATHLL+ G DLR++Q +LGH  LSTTQIYT V  ++    + +++ + HP 
Sbjct: 121 ATHLLNRGADLRALQMLLGHSSLSTTQIYTLVAREH----LQKLHARHHPR 167


>gi|291280612|ref|YP_003497446.1| site-specific recombinase, phage integrase family [Deferribacter
           desulfuricans SSM1]
 gi|290755314|dbj|BAI81690.1| site-specific recombinase, phage integrase family [Deferribacter
           desulfuricans SSM1]
          Length = 321

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 63/308 (20%), Positives = 125/308 (40%), Gaps = 14/308 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L++ ++ ++++L + R  S  T++ Y  +   F+ +   Y +E      I  ++   I+
Sbjct: 14  DLIRWKKLFIEDLRV-RNYSNNTIELYSKEIDYFIEYSRGYVDEM----DINDINRPYIQ 68

Query: 73  AFISKRRT----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLP 126
             ++ R        I   + +  +  +K F  ++ +     +      R +K        
Sbjct: 69  GSLAYREEISIKDSISSNTKQIYIKALKQFFIFITENNREYKDYTTIFRKIKIVTQTKEK 128

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-- 184
             L E++   L++ + +  S     +  RN  ++ LL   GLRISEAL L   +  +   
Sbjct: 129 EYLTEQEISKLLNYLEVLKSRRESIVTFRNVFLIKLLLYSGLRISEALQLKFTDFEEIAI 188

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
            +T   Q K            V K ++E   L   +   N    +F    G  L      
Sbjct: 189 NNTYYYQIKVKGKGQTESYAYVPKELIEDEYLYLSESYSNKHNNIFITRNGSILKRQDAY 248

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + I  + +  G+   T  H LRH+FA  L++ G DL  I+ +L H  +++T +Y     +
Sbjct: 249 KIITNIYKKAGINK-TGIHLLRHTFAMKLVNAGVDLLHIKELLRHKNVNSTLVYAKSTQQ 307

Query: 305 NGGDWMME 312
              +   +
Sbjct: 308 MVDESFKK 315


>gi|189426739|ref|YP_001953915.1| integrase domain protein SAM domain protein [Geobacter lovleyi SZ]
 gi|189422998|gb|ACD97395.1| integrase domain protein SAM domain protein [Geobacter lovleyi SZ]
          Length = 337

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 49/320 (15%), Positives = 109/320 (34%), Gaps = 23/320 (7%)

Query: 6   LPEIVS-FELLKERQNWLQNLEIERG-LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           LP      +L+ +   W   L++  G     T+ +Y      +L +       ++     
Sbjct: 25  LPVAADVPDLIDQAAEWFA-LDVANGDARPDTIATYISHLNHWLNWC------RVNNIDP 77

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
              + T ++AF  +         ++   L+ ++ F      R +   + +  ++  +K  
Sbjct: 78  GHATTTHLKAFRQELVQSGAAHATISLKLTTVRRFYDGAVSRGLLEANPVNGVKAPRKRT 137

Query: 124 S---LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +   + + L   +     + +     H+ K    R+ A+  L+   GLR  E      ++
Sbjct: 138 ADAEIIKCLTAGETERFFEAI----PHDHKLKSLRDRAMAALMTLEGLRRIEICRANLED 193

Query: 181 IMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR----- 234
           I +  S +RI      K   +         I  Y        +     P+F  +      
Sbjct: 194 IEETDSGVRILVHGKGKDGYIYPREDTVACIQNYLIQRGPVQSDKDGEPIFVSLSKGDKV 253

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
              +      ++I  +    G+       H LRH+    L     D++ +Q  L H  ++
Sbjct: 254 RGRITRIGLSKWIDTMLAKAGITKKGRGCHALRHTCGALLYQATRDVKVVQETLRHASIA 313

Query: 294 TTQIYTNVNSKNGGDWMMEI 313
               Y++V  +    +  +I
Sbjct: 314 MAAKYSHVQERGKARYTQQI 333


>gi|16519919|ref|NP_444039.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
 gi|2497418|sp|P55634|Y4RA_RHISN RecName: Full=Putative integrase/recombinase y4rA
 gi|2182598|gb|AAB92467.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
          Length = 409

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 123/295 (41%), Gaps = 15/295 (5%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
              + +  Q + ++L   R LS+ T+ +Y    R FL F   + + +I+   + QL   +
Sbjct: 111 PSAVEQHVQAYERHLRDARALSRQTIINYRPVVRDFLSF--RFGDGEIS---LAQLRAAD 165

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLPRA 128
           +  F+ K +  ++  R  K   + ++SFL Y + R   T      +  +   +  S+PRA
Sbjct: 166 VTDFVQK-KVSRLNMRRAKIVTTALRSFLSYARYRGDITSDLAAAVPIVANWSLSSIPRA 224

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           +       L+      +      I  R+ A++  L   GLR SE ++L   +I      +
Sbjct: 225 IGRDDVSRLL-----SSIDRDTPIGCRDYAMILALARLGLRSSEVVTLELDDIDWVAGRI 279

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R++GK  +   +PL   V +AI +Y                 +      + P      +R
Sbjct: 280 RVRGKHGR-NELPLPADVGEAIADYLWRARPRNASRRVFLRDKAPIRGFVGPSGLGSIVR 338

Query: 249 QLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +  +  G+   T   H  RH  A+ +L  G  L  I  +LGH  + TT IY  V+
Sbjct: 339 RSLKRTGIDSPTKGTHQFRHGLASEMLRGGASLGEIGEVLGHRHVQTTAIYAKVD 393


>gi|38637799|ref|NP_942773.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527137|gb|AAP85887.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 412

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 73/309 (23%), Positives = 125/309 (40%), Gaps = 14/309 (4%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
               +PE     +    Q +++ L   R LSK T+ +Y    R+FL     + + +I + 
Sbjct: 104 SAQRMPERRLTPIESCTQAYVEYLHEARALSKATIVNYVPFIREFLEDC--FGDGRIRLS 161

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-- 119
            +R     ++  F+ + +  ++  +  K   + ++SFL+Y   R   T      +  +  
Sbjct: 162 RLR---AGDVVNFV-QCQALRLHLKRAKLMTTALRSFLRYACYRGDMTLDLAAAVPVVAN 217

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
               S+PR +  +Q   L+ ++     +    +  R+ AI+ LL   GLR  E   L   
Sbjct: 218 WSMQSIPRGIPPEQIQQLLVSI-----NRRTAVGRRDYAIILLLARLGLRSGEVAFLELD 272

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           +I  +   L ++GK  +   +PL   V KAI  Y                 +        
Sbjct: 273 DIDWNTGVLSVRGKSGQRNGLPLPADVGKAIAAYLRDGRPQSTSRRVFLRAKAPVIGFRG 332

Query: 240 PGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                  +R   +  G+   TT AH  RH  A  +LS+G  L  I  +LGH    TT+IY
Sbjct: 333 ASGVGSIVRHSLQRAGIDAPTTGAHQFRHGLACQMLSHGASLSEIGELLGHHHPQTTKIY 392

Query: 299 TNVNSKNGG 307
           T V+ K   
Sbjct: 393 TKVDIKALR 401


>gi|239625431|ref|ZP_04668462.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519661|gb|EEQ59527.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 278

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 68/304 (22%), Positives = 121/304 (39%), Gaps = 43/304 (14%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L E + +L+    ER  S  T+  Y  D R F  F+               L    + +F
Sbjct: 6   LSEYETYLR--SEER--SANTIAKYIRDLRAFFSFMGN-----------EPLCKEAVVSF 50

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL---P-RALN 130
                T+     S+   L+ +  FL++    ++        ++ LK    L   P + L 
Sbjct: 51  KGYL-TESYAPASVNSMLAAVNGFLEWSGMAQM-------KVKPLKIQKCLFTRPEKELT 102

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           +++   L+       +            +L  +   G+R+SE   +T + +   Q+ +  
Sbjct: 103 QEEYWRLIKAAEEKGNDRLS-------MLLQTICATGIRVSEVRHITVEAVRAGQAKVDC 155

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +GK    R+V L   + +A+  Y      D+      P+F+   GKPLN     R ++ L
Sbjct: 156 KGKN---RVVFLPKVLCRALQRYCRRYGIDIG-----PVFKTASGKPLNRTNIWRDMKAL 207

Query: 251 RRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            +  G+ P     H LRH FA        DL  +  +LGH  ++TT+IYT  + ++    
Sbjct: 208 CKRAGVEPGKVFPHNLRHLFARTYYKLEKDLSRLADLLGHSSVTTTRIYTMESGRSHIRQ 267

Query: 310 MMEI 313
           +  I
Sbjct: 268 LERI 271


>gi|90020115|ref|YP_525942.1| Fis family transcriptional regulator [Saccharophagus degradans
           2-40]
 gi|89949715|gb|ABD79730.1| phage integrase [Saccharophagus degradans 2-40]
          Length = 362

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 67/308 (21%), Positives = 125/308 (40%), Gaps = 30/308 (9%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           I +G +  T+ +Y    R+   F           ++   L+      +      Q     
Sbjct: 21  IRQGKAATTIDAYSRAVRRITYFFD---------ESPDTLTQDHFEKYFQSLI-QTHSWS 70

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++K   +G++ F KY+ +++    +    +        LP  L   +   L+D+      
Sbjct: 71  TVKTDRNGLQFFYKYVLQKEWKWVN----IVKPPVVKVLPDVLTIDEIHRLLDS------ 120

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS 205
                 D R    + + +  GLR+SE L+L   +I  ++  + I+ GKG K R V L  S
Sbjct: 121 ----AKDLRYQTFILVCFSMGLRLSETLNLKVGDIDSERMKVHIREGKGKKDRYVTLPLS 176

Query: 206 VRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
             +A+ +Y+     P  L  +      R      +  G  Q+  R + R+ G+    + H
Sbjct: 177 ALQALRKYWKTHRNPNYLFPSGNTAAQRQDATIHMGRGRLQQKFRSIVRHSGIRKKISIH 236

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS---KNGGDWMMEIYDQTHPS 320
           +LRHS+ T L      LR IQ  +GH   +TT  YT ++     +  + +  + ++    
Sbjct: 237 SLRHSYGTLLTEANISLRKIQQEMGHVSPNTTARYTQLSDVFEMHTENKINTLMNRVAWR 296

Query: 321 ITQKDKKN 328
             +K+K N
Sbjct: 297 QPEKNKTN 304


>gi|124010561|ref|ZP_01695187.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134]
 gi|123982265|gb|EAY23838.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134]
          Length = 299

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 76/311 (24%), Positives = 126/311 (40%), Gaps = 29/311 (9%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N+LP       +     WL+ L    G +  T + Y    R+FL FL     E+  I  +
Sbjct: 2   NSLPLYHYQSYVAGFSGWLRTL----GYAPDTCRKYPRQLREFLHFL-----EETGIVDL 52

Query: 64  RQLSYTEIRAFISKRRTQ-------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
             +    +  F +  +++        +    L      ++ F +YL    +        +
Sbjct: 53  SSVDGAVVECFFTYLQSRPSIKTGKSLSTTHLLSMQKTLRQFTRYLDALGL----PGFAL 108

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             L+      ++L   +  +  +   L+ +  T +   R+ A+L L YGCGLR +E   L
Sbjct: 109 PRLRLQGLAAQSL---EVFSQAEIDGLYAACGTDFYGLRDQALLALGYGCGLRRAEVSQL 165

Query: 177 TPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIR 234
              ++   +  L ++ GKG K R VP+   V   +  Y       L  +   P L    R
Sbjct: 166 EVSDLHFKKGWLEVKAGKGAKARSVPMPTKVAAYLYRYVYQARAQLPQSGTTPALLLSWR 225

Query: 235 GKPLNPGVFQRYIRQLRRYLGL----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
              L+  +     R+L     L       T+ H LRHS ATHL + G  L +I   LGH 
Sbjct: 226 ATRLSKQMVSIRFRELVIKAELLSSEDKRTSFHCLRHSIATHLHAAGVSLANIALFLGHS 285

Query: 291 RLSTTQIYTNV 301
            L +T+IYT++
Sbjct: 286 SLDSTRIYTHL 296


>gi|87307065|ref|ZP_01089211.1| Integron integrase [Blastopirellula marina DSM 3645]
 gi|87290438|gb|EAQ82326.1| Integron integrase [Blastopirellula marina DSM 3645]
          Length = 354

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 64/322 (19%), Positives = 125/322 (38%), Gaps = 70/322 (21%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           R  S  T  +Y    R+++ F           Q  R L+ +++  F++     + +   +
Sbjct: 45  RRYSLRTEAAYLHSIRRYIDFHQH--------QHPRNLAESDLNRFLTHLAVKEHVAAST 96

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV-----DNVL 142
             ++LS I    +++ ++ +     I  +   ++   LP  L   +   ++     D  L
Sbjct: 97  QNQALSAILFLYEHVLEQPL---DRIEGVVRARRPKRLPVVLTVDEVSRVMVHLTSDKWL 153

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVP 201
           +        +                   EAL +  +++  ++S + I+ GKGDK R+  
Sbjct: 154 IAMLLYGGGLRLL----------------EALRMRVKDLDFERSEITIREGKGDKDRVTT 197

Query: 202 LLPSVRKAI------------------------------------LEYYDLCPFDLNLNI 225
           +  +V  ++                                     E+     F      
Sbjct: 198 MPRAVVHSLQEHLQRVKLVHEQDVADGYGRAELPHALARKYPNANQEWCWQFVFPQERRW 257

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
           +    R      ++  +F R ++   +  GL    T+HT RHSFATHLL++G D+R++Q 
Sbjct: 258 RNSRTREQGRHHIDESLFSRSLKAAVKQAGLTKRVTSHTFRHSFATHLLADGYDIRTVQE 317

Query: 286 ILGHFRLSTTQIYTNVNSKNGG 307
           +LGH  + TT IYT+V ++ G 
Sbjct: 318 LLGHKDVRTTMIYTHVLNRGGR 339


>gi|156936639|ref|YP_001440553.1| hypothetical protein ESA_pESA3p05520 [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156534893|gb|ABU79717.1| hypothetical protein ESA_pESA3p05520 [Cronobacter sakazakii ATCC
           BAA-894]
          Length = 325

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 63/285 (22%), Positives = 114/285 (40%), Gaps = 24/285 (8%)

Query: 40  ECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSF 98
               R FL  +A       +       L    ++  +           ++   LS +K  
Sbjct: 48  RQTMRSFLHIVAGMLGARALQHCPWGSLRRHHVQGLLEMLSASGRAPATINTYLSALKGT 107

Query: 99  LKYLKKRKITTES---NILNMRNLKKSN-SLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
            +     K+        IL +R ++ S  +  RAL  ++   L          +      
Sbjct: 108 AREAWMMKLMDTDSYQQILAVRAVRGSRLTRGRALTPEEVRALFSLC----EQDKSCKGP 163

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R++A+L ++ GCGLR SE + L   +I++    LR+ GKG+K R+  +  +V + +  + 
Sbjct: 164 RDAAMLAVMLGCGLRRSEVVGLDYASILEQDQALRVLGKGNKERLAFMPDTVWQRLRHW- 222

Query: 215 DLCPFDLNLNIQLPLFRGIR------GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
                 +      PLF  IR       + L P      + + R   G+  +   H LR +
Sbjct: 223 ---TDSVRGEYPGPLFTRIRAGDDVTSERLTPQAVYHILNERRMQCGID-NCAPHDLRRT 278

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           FA+ +L NG DL +++  +GH  ++TTQ Y     + G   +   
Sbjct: 279 FASMMLDNGEDLITVRDAMGHASVTTTQKY----DRRGDARLRRA 319


>gi|118444090|ref|YP_878186.1| integrase/recombinase [Clostridium novyi NT]
 gi|118134546|gb|ABK61590.1| integrase/recombinase, putative [Clostridium novyi NT]
          Length = 274

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 118/288 (40%), Gaps = 33/288 (11%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGD 85
            E   S  T+ SY  D  QF  ++    ++   I        ++I  + +     + +  
Sbjct: 13  AENRKSGKTIDSYIRDINQFNEYIKVNKKKLNKIN------NSDIDEYKNHLIYDRGLKI 66

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNEKQALTLVDNVLL 143
           +++ R L  I  FLK+         +  +++R  K      L   L+ +    LV+    
Sbjct: 67  KTINRKLVSINQFLKFN--------NITVDIRQEKVQMQNFLDDILSNEDVKALVNATY- 117

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
                 K  D R  AI+Y LY  G+R+SE L LT       + ++ I GKG K R V + 
Sbjct: 118 ------KKDDLRARAIIYTLYYTGMRVSEMLQLTI--YDIKKQSITILGKGSKHREVFVP 169

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-STTA 262
             ++     Y ++      +     LF G RG P+N       I++     G+      A
Sbjct: 170 NKLKDIWEAYMNVR-----IKKGTALFTGKRG-PINRKTVDSLIKEYAALAGVNKSKAHA 223

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           H  RH +  +L   G D+ +I  I GH  ++TT+IYT    +   D +
Sbjct: 224 HNFRHLYCKNLADKGIDISTIADIAGHQNINTTRIYTRKTKEELLDII 271


>gi|172039474|ref|YP_001805975.1| putative integrase/recombinase [Cyanothece sp. ATCC 51142]
 gi|171700928|gb|ACB53909.1| putative integrase/recombinase [Cyanothece sp. ATCC 51142]
          Length = 360

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 66/343 (19%), Positives = 134/343 (39%), Gaps = 69/343 (20%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
            +++++  Q +L  L   +  S  T++SY    + +  FL   T         +++  T+
Sbjct: 24  DYQVVEPIQRYLTFLSGTK--SPNTVESYGYGLKAWWEFLQSKT------LNWKEVQLTD 75

Query: 71  IRAFISKRR-------------TQKIGDRSLKRSLSGIKSFLKYLKKR------------ 105
           +  F+   R               K  +RS+  +L+ + +F +Y                
Sbjct: 76  LEDFVHWLRVGDTSNIVSMQPVKAKRSERSINLALTAVTTFYEYHDAHKNVDPKKFDRLI 135

Query: 106 ------------KITTESNIL-NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
                        I+        +  LK+    P  L ++Q  TLV++            
Sbjct: 136 TTRGNTRRGLLDGISKSKPTRQKLVKLKEPKKFPGCLTDEQLETLVNSC----------H 185

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGK--------GDKIRIVPLL 203
             R+  ++ LL G G+R+ E L L  ++I       + ++ +          + R +P++
Sbjct: 186 RLRDKFLILLLNGTGIRVGELLGLQHEDIGDGSDYFIHVRKRRHNNEARAKGQERTIPVI 245

Query: 204 PSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           P + +   +Y      ++  N + + ++ G  G P+   V      +L +  G+      
Sbjct: 246 PELLQMYNDYLIYEYPEVESNYVFVNIWEGAIGMPMKAPVINTMFTRLSKKTGI--KVYP 303

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
           H  RH++AT LL  G     ++ +LGH  + TT  IY++V S+
Sbjct: 304 HLFRHTYATRLLKAGYSPERVKYLLGHTSIQTTLDIYSHVISE 346


>gi|323709102|gb|ADY02574.1| IntI1 integron integrase [Aeromonas caviae]
          Length = 291

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 65/310 (20%), Positives = 120/310 (38%), Gaps = 64/310 (20%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNG 277
           SFAT LL +G
Sbjct: 282 SFATALLRSG 291


>gi|147678470|ref|YP_001212685.1| integrase [Pelotomaculum thermopropionicum SI]
 gi|146274567|dbj|BAF60316.1| integrase [Pelotomaculum thermopropionicum SI]
          Length = 314

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 64/316 (20%), Positives = 122/316 (38%), Gaps = 30/316 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  Q +L   + + GL++ TL  Y     QF              +  +  +   +++ +
Sbjct: 19  EALQGFLFWKQAQ-GLAERTLTDYRKHVSQFFN------------RHPKAYNSKNLKSAV 65

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            +   Q +   +    L  +K+F  +  +  I T++ +   +  K      R +N ++  
Sbjct: 66  LEYMAQPVKPATFNLRLVNLKAFFDWCIQEGIFTDNPLAGFKRRKAEG---RVVNIEEEK 122

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG--- 192
                 LL   ++  +   R+ A+L L    G+R  EA SL   +I      + I+    
Sbjct: 123 L---ARLLTLPNKETFAGLRDYALLLLTLDTGIRPKEAFSLLVDDINLRSLEVCIRSEIA 179

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K    R +P+ P   + I E               P+F    G  +    +   +    +
Sbjct: 180 KTRTTRTLPISPVTAQVIRELLQSRHP--AWKNSTPVFCSSEGGKMTDLKWGDRLEVYSK 237

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            LG+      + LRH+FA   L NGG   ++Q ILGH  L+ T+ Y  +  ++    + E
Sbjct: 238 QLGV--WIRPYDLRHAFALQFLRNGGQPFALQRILGHTDLTMTKRYIALTQQD----LRE 291

Query: 313 IYDQTHPSITQKDKKN 328
            +    P  T   +K+
Sbjct: 292 QHTVASPLNTLAPQKH 307


>gi|145594863|ref|YP_001159160.1| phage integrase family protein [Salinispora tropica CNB-440]
 gi|145304200|gb|ABP54782.1| phage integrase family protein [Salinispora tropica CNB-440]
          Length = 322

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 70/317 (22%), Positives = 127/317 (40%), Gaps = 16/317 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ--TIRQLSYTEI 71
           +++  +++L +    R  S  T+++Y  D R      A      + +    +  L    +
Sbjct: 1   MVRLIEDFLTD-RATRKPSPHTVEAYRRDLRTVASIAADALTSPLPLDALPLAALHSRTL 59

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           R+  +     +    S+ R+ S   SF  +L    +   + +  +   +     P+ L  
Sbjct: 60  RSAFAHFAATR-SAASVHRAWSTWNSFFVFLVADGVVAGNPMPAVGRPRAPLPRPKPLRG 118

Query: 132 KQA-LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTL 188
                 L+  V      +      R+ A+L L    GLR++E L+L   +      +  L
Sbjct: 119 ADTPEQLLTAVARVDGRQRDPWPQRDLAVLALALCGGLRLAEMLALRVASLAGRVGERRL 178

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN---LNIQLPLFRGIRGKPLNPGVFQR 245
            + GKG + R+VP+ P + + + +Y + C        +    PL    RG PL  G  Q 
Sbjct: 179 DVAGKGGRPRVVPVEPELDQVLADYLESCRRRFGSATVRPDAPLLMDRRGGPLRRGGLQY 238

Query: 246 YIRQLRRYLGL----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            +    R  G+    P     H LRH+FAT L  +G     I  +LGH  L+++Q Y  V
Sbjct: 239 LVDSCFRRAGIGDRVPQGARLHALRHTFATRLAEDGASAAEIMRLLGHVSLASSQAYIEV 298

Query: 302 NSKNGGDWMMEIYDQTH 318
            +      +    ++TH
Sbjct: 299 TAGQQRAAVRA--NRTH 313


>gi|86742414|ref|YP_482814.1| phage integrase-like SAM-like protein [Frankia sp. CcI3]
 gi|86569276|gb|ABD13085.1| phage integrase-like SAM-like [Frankia sp. CcI3]
          Length = 323

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 64/326 (19%), Positives = 122/326 (37%), Gaps = 73/326 (22%)

Query: 16  KERQNWLQNLE-IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +  + +L  L  IER  S  T+++Y  D +   +FL +           R++   +I  F
Sbjct: 15  EPVERYLAYLSDIER--SPNTVKAYAHDLKDHWVFLGWRG------LDWREVRLEDIGEF 66

Query: 75  ISKRR----------------TQKIGDRSLKRSLSGIKSFLKYLKKRKI-------TTES 111
           ++  R                   +   ++ R LS + +F  Y  +  +       T  S
Sbjct: 67  VAWLRLPAAGRDGRVAVLSSVEPAVSASTVNRKLSALAAFYAYQVRHGVELGELLTTWGS 126

Query: 112 N-------------------ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
                                  +  LK +  LPR L   +   ++D+            
Sbjct: 127 PGRRGGWKPFLHHVGKGRPQPRRVIALKTAKKLPRVLAAAEVQAVLDSC----------T 176

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---------QGKGDKIRIVPLL 203
             R+  +  +LY  G+R+ EAL L   +I      + +         + K    R+VP+ 
Sbjct: 177 RLRDRFLFAVLYDTGMRVGEALGLRHDDIDAAACEVTVVARDNDNGARSKSRGRRMVPVS 236

Query: 204 PSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
             + +   +Y      DL+ + + + LF   RG+ L+       +++LR+   +      
Sbjct: 237 AGLVRLYADYLHGEYGDLDSDYVFVNLFAEPRGQALSYPASYDLVKRLRKRTRIDFD--P 294

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILG 288
           H  RH++AT LL +G  L  + ++LG
Sbjct: 295 HWYRHTYATRLLRDGVPLEVVSTLLG 320


>gi|332292898|ref|YP_004431507.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170984|gb|AEE20239.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 274

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 64/281 (22%), Positives = 122/281 (43%), Gaps = 29/281 (10%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           +  S  T+ +Y      +  +L      E++ +  +     T +R FI K   ++    +
Sbjct: 12  KRYSDSTVTTYIGLLVSYQNYLGDSRPLERLDLSYL----ITTLRDFILK---KEYTFNT 64

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
            K+ +S +  + K      +  E ++ ++R       LP  L+  +  +++ +       
Sbjct: 65  QKQLISAVSLYYK----EALRQEIDLSSLRPRSPQRVLPDILSTYEVKSILHHT------ 114

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSV 206
                + ++ A L  +Y  GLR+ E + L    +   ++T+ I+  KG K R +P   S+
Sbjct: 115 ----TNLKHKAALTTIYALGLRVGELVDLRLAAMDKKRNTITIKAAKGKKDRQLPFPESL 170

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           +  + +YY              LF G           +   R   +   +    T H+LR
Sbjct: 171 KPLLRQYY------KEYKPTDYLFEGQSKPQYTAASLRSVFRASCKKARIKKKVTLHSLR 224

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           H++ATHL+ +G DLR IQ +LGH  + TT IYT+V +++  
Sbjct: 225 HAYATHLMDSGTDLRMIQELLGHSDIKTTMIYTHVTTRSIQ 265


>gi|258624140|ref|ZP_05719090.1| Integrase [Vibrio mimicus VM603]
 gi|258583571|gb|EEW08370.1| Integrase [Vibrio mimicus VM603]
          Length = 350

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 62/307 (20%), Positives = 126/307 (41%), Gaps = 31/307 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L +L  +R  S+ T+ S+     + + F      + +       +    I A +    
Sbjct: 60  AYLVSLGSKR--SRQTMSSFLNIVAKMIGF------QNLRDCAWSSMRRHHILAVLEMLG 111

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPR--ALNEKQAL 135
                  ++   LS +K         K     +  +++ ++  + + LP+  AL   +  
Sbjct: 112 DAGKAPATINTYLSALKGVALEAWTMKQIDTDSFQHIKQVRSVRGSRLPKGRALERHEIR 171

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +L          ++     R++AIL +L GCGLR SE ++L   +++     L++ GKG+
Sbjct: 172 SLFFTC----ESDSSAKGLRDAAILGVLLGCGLRRSEIVALDMGSMIHKDRALKVLGKGN 227

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK------PLNPGVFQRYIRQ 249
           K R+  +     K + ++      ++    + PLF  IR         ++       +  
Sbjct: 228 KERMAYVPGGAWKRLDKW----VEEVRGTHEGPLFPRIRRFDDVTGERMSDQAIYHILET 283

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            R   GL      H LR +FA+ +L NG D+ +++  +GH  ++TTQ Y     + G + 
Sbjct: 284 RRVEAGLEK-FAPHDLRRTFASSMLDNGEDIVTVKDAMGHSSIATTQKY----DRRGDER 338

Query: 310 MMEIYDQ 316
           +     +
Sbjct: 339 LKRASQR 345


>gi|126665398|ref|ZP_01736380.1| putative integrase [Marinobacter sp. ELB17]
 gi|126630026|gb|EBA00642.1| putative integrase [Marinobacter sp. ELB17]
          Length = 321

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 70/311 (22%), Positives = 125/311 (40%), Gaps = 21/311 (6%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P+       ++   +++ +  ERGLS  T+      + Q   FL+      I+   +  +
Sbjct: 19  PQNQPKRFAEQIDTFVKFMRDERGLSPATIT---FRSEQVTHFLSTICGPDIS---LAAI 72

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNS 124
           +  ++ A++S + +      SL      ++SF +Y + +   +     ++   +      
Sbjct: 73  TINDVDAYLSYQGSHGWSRTSLHTLADALRSFFRYSEAQGW-SSGIAASVDAPRIYAQED 131

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP     +Q   L+ +           +D R+ AI+ LL   GLR  E   L   ++   
Sbjct: 132 LPLGPTWEQVQQLITSF-----SSNNAVDIRDRAIVLLLAVYGLRSGEVTRLRLGDVDWV 186

Query: 185 QSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
              L I + K    +  PL P V  AIL Y        +   QL +      +PL P   
Sbjct: 187 GEILHITRPKQRCTQQYPLDPEVGDAILRYLKEARPRCSSR-QLFMALNAPIRPLMPKCI 245

Query: 244 QRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              +      LG+ +    AH LRH+ A HLL+    L+ I   LGH   S+T++Y  V+
Sbjct: 246 TPIVHSRLDALGIHVPRRGAHCLRHACARHLLAASFSLKQIGDQLGHRSASSTRVYAKVD 305

Query: 303 SKNGGDWMMEI 313
                D + ++
Sbjct: 306 ----LDGLRQV 312


>gi|315644272|ref|ZP_07897442.1| integrase family protein [Paenibacillus vortex V453]
 gi|315280647|gb|EFU43936.1| integrase family protein [Paenibacillus vortex V453]
          Length = 303

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 56/315 (17%), Positives = 124/315 (39%), Gaps = 28/315 (8%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           ++ S       + +L+  ++  G++K T + Y                    ++      
Sbjct: 9   QMTSRHWEDILEEFLRF-KLLNGIAKTTHKDYIRTVNLLFKRFPDAWGSYYKLE------ 61

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
                A I     + I   +    L+ +++F K+  +     ++ +  ++  K+ + +  
Sbjct: 62  ----EAVIDHLNQEGIAPATFNSRLTYLRTFFKWCVEEGHLKKNPLTKIKKRKEGSRI-V 116

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           A++ +    L+         ++ ++  R+  ++      G+R SEAL+L P +       
Sbjct: 117 AISIETLQELI-----RVPDQSTFVGMRDYTLIIFTLDTGIRPSEALALQPNDFNLISGW 171

Query: 188 LRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           +RI     K    R + + P    A+    D+ P   +   ++P+F    G  LN   + 
Sbjct: 172 VRIPDGAAKTRVSRTLNISPVTVDALKRLIDMRPR--SWANKVPVFSTETGNVLNRHTWG 229

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             + +  + +G+    T + LRH+FA   L NG    S+Q  LGH  +S T+ Y  +  +
Sbjct: 230 DRLERHSKQVGV--HITPYALRHAFALEFLRNGASAFSLQKTLGHVDISMTKRYVALADE 287

Query: 305 NGGDWMMEIYDQTHP 319
           +    +   + +  P
Sbjct: 288 D----LKRDHIKASP 298


>gi|227461203|gb|ACP39546.1| putative integron integrase [uncultured microorganism]
          Length = 310

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 73/334 (21%), Positives = 127/334 (38%), Gaps = 62/334 (18%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           + +    +L    +  +++L   RG  +    +Y    ++F++F                
Sbjct: 1   MSQKSPLKLHDHFRLRIRSLHYSRGPKE----TYWHWIKRFIVFHGKRHP--------SL 48

Query: 66  LSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L   E  AF+S   T + +   +   +L+ I    K +    +     + ++   KK   
Sbjct: 49  LGRAEAEAFLSSLATDRNVAANAQNLALASILFLYKEVLAEDL---PWLSDVTRAKKPKR 105

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           +P  L+ ++   L+                     ++LLYG G+R+ EAL L  +++  D
Sbjct: 106 IPTVLSRQETEALLAAAGPQGGAALA---------VHLLYGTGMRLLEALRLRVKDVDFD 156

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRK----------------------------------- 208
           +  L ++ GKG K R+      +                                     
Sbjct: 157 RRELCVRDGKGGKDRMTVFPQVLLAPMRAHLAWRRTVFDEDSRRDMADVWLPDALAVKYP 216

Query: 209 -AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
            A  E+     F  N     P+    R   L     Q+ +R      G+    + HTL H
Sbjct: 217 NAAREWGWQYVFVANRFSTDPVSGVARRHHLGESQIQKLVRGAGIQAGVAKPVSPHTLHH 276

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFATHLL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 277 SFATHLLESGADIRTVQELLGHANVSTTMIYTHV 310


>gi|253681402|ref|ZP_04862199.1| putative integrase/recombinase [Clostridium botulinum D str. 1873]
 gi|253561114|gb|EES90566.1| putative integrase/recombinase [Clostridium botulinum D str. 1873]
          Length = 274

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 71/285 (24%), Positives = 124/285 (43%), Gaps = 27/285 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
             S+ T+ SY  D  QF  +L    ++   I+ I  +   E + F+   +  KI   ++ 
Sbjct: 16  RKSEKTIDSYIRDISQFNDYLKTNKKKLAKIK-ISDID--EFKNFLIYHKELKIK--TIN 70

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R L  IK +LK+         +  ++++  K        L++  +   ++N++  T  + 
Sbjct: 71  RKLVSIKQYLKFN--------NISVDIKQEKVQMQ--NFLDDMLSNQDIENIIKATYAKD 120

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              D R   I+Y LY  G+R+SE L LT       +S++ I GKG K R V +   ++  
Sbjct: 121 ---DLRARTIIYTLYYTGMRVSEMLQLTI--YDTKKSSISIIGKGSKHREVFVPNKLKTI 175

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-STTAHTLRHS 268
              Y  +      +     LF G RG P+N       I+      G+      AH  RH 
Sbjct: 176 WDNYLQVR-----IKKSTALFTGKRG-PINRKTVDSIIKTYAEAAGVDKSKAHAHNFRHL 229

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +  +L   G D+ +I  I GH  ++TT+IYT    +   + + ++
Sbjct: 230 YCKNLADRGIDISTIADIAGHQNINTTRIYTRKTKEELLNIIEDM 274


>gi|313676056|ref|YP_004054052.1| integrase family protein [Marivirga tractuosa DSM 4126]
 gi|312942754|gb|ADR21944.1| integrase family protein [Marivirga tractuosa DSM 4126]
          Length = 286

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 126/293 (43%), Gaps = 43/293 (14%)

Query: 22  LQNLEIER-----GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           LQ   + R     G S+ TL +Y        ++             + +L   +I  ++ 
Sbjct: 6   LQYKRLRRSIDIAGKSQSTLTNYGRCLAHMGLYFEC---------DLLELDDEQILDYLY 56

Query: 77  KRRTQKI--GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
             ++++    D     ++ G++   +  ++R+       + + ++++  +LP  L++++ 
Sbjct: 57  MLKSKRKTPSDSFFMHTVYGLRYLYRIFEQRESR-----VILPSIERQKALPVVLSQQEV 111

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GK 193
                               ++  ++ LLYGCGLR  E  +L   ++  ++  L +Q GK
Sbjct: 112 RL----------LLKTPKLLKHRLMMALLYGCGLRNFELCNLKIVHLDLERKQLHVQQGK 161

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-----GKPLNPGVFQRYIR 248
           G K R VPL   + + +  Y               LF G          L+    Q  +R
Sbjct: 162 GRKDRYVPLCDLLVRGVNTYLQ------AEKPTEYLFNGQPDEDGGHTQLSTRGVQWVMR 215

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           Q R+  G+    TAHTLRHS+ATHLL  G D+ +++ +LGH  + TT  Y +V
Sbjct: 216 QARQQSGIKKQITAHTLRHSYATHLLEMGTDIMTLKDLLGHGDIQTTLGYLHV 268


>gi|229104798|ref|ZP_04235459.1| Integrase/recombinase (XerC/CodV family) [Bacillus cereus Rock3-28]
 gi|228678671|gb|EEL32887.1| Integrase/recombinase (XerC/CodV family) [Bacillus cereus Rock3-28]
          Length = 328

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 69/335 (20%), Positives = 127/335 (37%), Gaps = 47/335 (14%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E   +  N++      + LS  TL+SY+     FL+++     E   ++   ++    I 
Sbjct: 7   EFELQLDNFMLYCSS-KNLSTKTLKSYDQTLNLFLLYMR----ETYQVEEAGKVKAVHIG 61

Query: 73  AFISKRRTQK-------------------------IGDRSLKRSLSGIKSFLKY-LKKRK 106
            +I   + +                          + D ++   L  IK F  +  +  +
Sbjct: 62  QYIKYLKERGKYTVASTTIANDINRPHNRTDYKKPLSDTTIANYLRNIKVFFNFLFQVER 121

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
               + + +++N+K        L E + + ++          T +   RN  +  LL   
Sbjct: 122 EIKINPVESIQNIKPKRKQKPLLTEDEIIRVLRVF-----DVTTFHGYRNWIVTRLLLDT 176

Query: 167 GLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           G+RISE L L P+ I      + I   K  + R       +   +  +        N + 
Sbjct: 177 GMRISECLELCPEKIDFKHKAILIENSKNKQQRYTYFSFKMANDLKRWLLYRDRYSNSD- 235

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
              +F  IRG  L    F++ +R+  + +G+  S   H LR++FA + + NGGD  S+  
Sbjct: 236 --YMFPTIRGTQLEVRNFEKSLREAGKRVGV--SIHPHQLRNNFAKYYVLNGGDWASLSR 291

Query: 286 ILGHFRLSTTQI-YTNVNSKNGGDWMMEIYDQTHP 319
           ILGH  +  TQ  Y +      G      Y +  P
Sbjct: 292 ILGHSSVEVTQKAYLDFTDSEIGKK----YQKHSP 322


>gi|94985803|ref|YP_605167.1| phage integrase [Deinococcus geothermalis DSM 11300]
 gi|94556084|gb|ABF45998.1| phage integrase [Deinococcus geothermalis DSM 11300]
          Length = 285

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 64/305 (20%), Positives = 118/305 (38%), Gaps = 36/305 (11%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L  + + +L  L+     S  T+++Y  D R    +L   T + +  + +          
Sbjct: 6   LQTQAERFLTELK----RSPQTVRAYRADLRHLTTWLEE-TGQVLNGEGLDAY------- 53

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F +          +  R  + ++ F  +  +R++      L++         PR L  ++
Sbjct: 54  FAAHLH---WAPATRNRKQTALERFCHWALQRELLDRDPTLHLERPSLPPPHPRGLRREE 110

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQ 191
              +   +             R++ +  L++  GLRI EAL +  +++   +    L + 
Sbjct: 111 IERIFAVIPAEQ--------VRDALLFRLVFETGLRIGEALGVHVEDLDLTRGDEHLTVL 162

Query: 192 GKGDKIRIVPLL-PSVRKAILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNPGVFQRYI 247
           GKG + R V L  P +   +  Y     +        PLF   +  RG PL     Q   
Sbjct: 163 GKGSRRRTVLLDDPKLVNMLRRYLRTLGY-----THGPLFQATKNGRGGPLRYQSVQERW 217

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +      G+    T H LRHS AT L++ G  L +I+  LGH  + TT  Y  V+ +   
Sbjct: 218 QGYAERAGVT--CTLHQLRHSHATELVNGGVSLATIRKRLGHQHIQTTLRYAEVSDQTAD 275

Query: 308 DWMME 312
             + +
Sbjct: 276 AEVRQ 280


>gi|169838713|ref|ZP_02871901.1| recombinase [candidate division TM7 single-cell isolate TM7a]
          Length = 222

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 57/228 (25%), Positives = 99/228 (43%), Gaps = 17/228 (7%)

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +S IK+F K+    +   +     +R+LK+    P  L  ++   +VD+          
Sbjct: 4   KVSAIKAFYKFCYLNRAVEKDPAGMVRSLKREYRSPEILTLEEIKKIVDSC------PNM 57

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
               +N  I+  L   G RISE L+L  ++        +++ GK  K RIVP+  S+   
Sbjct: 58  PEGMQNRLIIKFLIATGARISEILNLEIKDLENKKYEFIKVLGKDSKYRIVPIYDSLENE 117

Query: 210 ILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           I  Y D   P   N N    +F   R +      F + ++ + +  G+  +   H  R+S
Sbjct: 118 IKNYLDVYRPKLKNANDSFKIFPNARREK-----FWKDLKNIAKNAGIEKNVYPHIFRYS 172

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            A  LL +  D R +Q I G+  ++TT+  T+V        + +IY+ 
Sbjct: 173 LAEILLGDNADTRIVQEIFGYASITTTETCTHV----EKSKLKKIYNN 216


>gi|290475364|ref|YP_003468252.1| integrase/recombinase [Xenorhabdus bovienii SS-2004]
 gi|289174685|emb|CBJ81481.1| Integrase/recombinase [Xenorhabdus bovienii SS-2004]
          Length = 305

 Score =  142 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 65/304 (21%), Positives = 130/304 (42%), Gaps = 27/304 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L +L  +R  S+ T++S+     + L +      + +   T   L    ++A +    
Sbjct: 17  AYLVSLGSKR--SRQTMKSFLNIVAKMLGY------QNVQDCTWNALRRHHVQAIMEMLS 68

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPR--ALNEKQAL 135
                  ++   L+ +K         K     +  +++ ++  + N LP+  AL+  +  
Sbjct: 69  DSGKAPATINTYLAALKGVALEAWTMKQIDTDSFQHIKQVRSVRGNRLPKGRALDRYEIK 128

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           TL         ++      R++AI+ +L GCGLR SE +SL  ++++  +  LR+ GKG+
Sbjct: 129 TLFFTC----ENDFSTKGLRDAAIIGVLVGCGLRRSEIISLDLKHVIRREQALRVMGKGN 184

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG------KPLNPGVFQRYIRQ 249
           K R+  +     + +  + D    ++  +   PLF  IR         L+       +  
Sbjct: 185 KERLSYMPEGTWERLNRWID----EIRGDYAGPLFTRIRRDDDVTDNRLSDQAIYHILET 240

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            R   GL      H LR +FA+ +L NG D+ +++  +GH  ++TTQ Y     +   + 
Sbjct: 241 RRIESGLEK-FAPHDLRRTFASAMLDNGEDIVTVKDAMGHSSITTTQKYDRRGDERLKNA 299

Query: 310 MMEI 313
              +
Sbjct: 300 AKNL 303


>gi|240173390|ref|ZP_04752048.1| phage integrase family protein [Mycobacterium kansasii ATCC 12478]
          Length = 346

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 68/330 (20%), Positives = 127/330 (38%), Gaps = 48/330 (14%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
            +E L     +L +L   RG S  T+++Y  D      FL   TE  +T+  ++     +
Sbjct: 17  DWEGLDSANAFLTHLAG-RGFSAATVRAYAFDVANLARFL---TERDVTLSEVQAPLVFD 72

Query: 71  IRAFISKRRTQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN------- 118
              +   RRT +         ++ R ++ +++  +YL        + + + R        
Sbjct: 73  WIDWQGVRRTGRPQPGSAAASTVNRRVAAVRALFEYLAMTGRRGNNPVPSPRRGQGLRRS 132

Query: 119 -------------------LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
                              +++   LP +L        V                R+ A+
Sbjct: 133 ERGLLGHLGPGRARPGGRLVRQPQLLPESLPASDIDAFV----------ATLGSHRDRAM 182

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CP 218
           +  +   GLR +EA  L   ++   +  LR+ GKG K R VP+  +    +  Y  L  P
Sbjct: 183 VLAMLLGGLRSAEARGLLLADVDMGRRRLRVIGKGGKERYVPVDAAFFTEVAAYLRLERP 242

Query: 219 FDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
             L+      + RG     P++    +   R+ R   G  +    H LRH++ T L S G
Sbjct: 243 AGLSTPQCFVVLRGPTTGAPVSEAGLRSLFRRHRELSG-SIRVRPHRLRHTYGTELASAG 301

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            DL ++++++GH    TT  Y +++ +   
Sbjct: 302 IDLLALRALMGHASPETTARYVHLSLEQLA 331


>gi|134044556|ref|YP_001101862.1| phage integrase [Yersinia ruckeri]
 gi|133904919|gb|ABO40936.1| phage integrase [Yersinia ruckeri]
          Length = 336

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 62/307 (20%), Positives = 127/307 (41%), Gaps = 31/307 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L +L  +R  S+ T+ S+     + + F      + +       +    I A +    
Sbjct: 46  AYLVSLGSKR--SRQTMSSFLNIVAKMIGF------QNLRDCAWSSMRRHHILAVLEMLG 97

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPR--ALNEKQAL 135
                  ++   LS +K         K     +  +++ ++  + + LP+  AL   +  
Sbjct: 98  DAGKAPATINTYLSALKGVALEAWTMKQIDTDSFQHIKQVRSVRGSRLPKGRALERHEIR 157

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +L          ++     R++AIL +L GCGLR SE ++L  ++++     L++ GKG+
Sbjct: 158 SLFFTC----ESDSSAKGLRDAAILGVLLGCGLRRSEIVALDMESMIYKDRALKVLGKGN 213

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK------PLNPGVFQRYIRQ 249
           K R+  +     K + ++      ++    + PLF  IR         ++       +  
Sbjct: 214 KERMAYVPGGAWKRLDKW----VEEVRGTHEGPLFPRIRRFDDVTGERMSDQAIYHILET 269

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            R   GL      H LR +FA+ +L NG D+ +++  +GH  ++TTQ Y     + G + 
Sbjct: 270 RRVEAGLEK-FAPHDLRRTFASSMLDNGEDIVTVKDAMGHSSIATTQKY----DRRGDER 324

Query: 310 MMEIYDQ 316
           +     +
Sbjct: 325 LKRASQR 331


>gi|313667356|ref|YP_004049757.1| integrase family protein [Oceanithermus profundus DSM 14977]
 gi|313153987|gb|ADR37837.1| integrase family protein [Oceanithermus profundus DSM 14977]
          Length = 345

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 55/297 (18%), Positives = 123/297 (41%), Gaps = 21/297 (7%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ--TIRQLSYTEIRAFISKRRTQK---- 82
           R  S+ +L++Y+        ++A+    ++      + + +  ++  +++    +     
Sbjct: 43  RQRSRTSLRTYQLYGLAVRDWIAWAWPPEVEAPQVPLLKATEDDVDRWLADLLDRGGHLS 102

Query: 83  -----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +   +    LSG+++F + L       ++    +R  +     PR+         
Sbjct: 103 ENPWPLSPSTAAAYLSGLRAFYRALVWAGAVAKNPAAEVRAPRDPT--PRSERRPALPYP 160

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDK 196
           +   LL      +    R+ A++ L+   GLRI+E  +L  +++   +  + ++ GKG K
Sbjct: 161 LYIRLLEHLSGDEAQQVRDRAVIRLMGDAGLRIAEVEALDVKDVDLGEHVVVVRAGKGGK 220

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-----RGKPLNPGVFQRYIRQLR 251
            R VP+  ++  A++E+  +         +  LF  +     +G+ L     +R++    
Sbjct: 221 QRTVPMTRALSSALVEWLGVR-RAYAAPGEEALFVNLGGRKAKGRRLRAHSIRRFLEGYY 279

Query: 252 RYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           R LG P     AHTLRH   T       D+  + ++LGH  + T+ +Y  ++     
Sbjct: 280 RELGFPERYRGAHTLRHLAGTRFYQASRDIHVVAALLGHENVGTSTVYAKMDRSRLR 336


>gi|225386262|ref|ZP_03756026.1| hypothetical protein CLOSTASPAR_00004 [Clostridium asparagiforme
           DSM 15981]
 gi|225047634|gb|EEG57880.1| hypothetical protein CLOSTASPAR_00004 [Clostridium asparagiforme
           DSM 15981]
          Length = 354

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 56/295 (18%), Positives = 116/295 (39%), Gaps = 35/295 (11%)

Query: 16  KERQNWLQNLEI--ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
            ER  +L  L +  +R LSK TL SY    ++ ++        +I  +++ Q+  T+I  
Sbjct: 65  DERNKYLIQLFMIKKRDLSKETLTSYLSAVKRLMV--------EINGKSLDQMDETDIDW 116

Query: 74  FISKRRTQKIG-------DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           ++++   + +          ++      + +F  +++K K+  ++ + ++   K      
Sbjct: 117 YLTQYEQRNVSSGGKKNEASTVNNERRFLSAFYTWMRKAKLIADNPVESIPAKKVPRKPI 176

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
              + ++   + D             + R  AI+ +    G R+ E   +T   +  +  
Sbjct: 177 DYYSAEEIARIRDACK----------NPRERAIVEVFRSTGARVGEIAEITLDQLDLETG 226

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVF 243
            + IQG KG + R + L    R     YY         +    L    R     ++   +
Sbjct: 227 DIMIQGEKGGRYRTIYLDDDAR-----YYYRMYLATRKDDSPYLLPHSRKPYGKMSTDAY 281

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +  ++ + R  GL      H +R +   +L + G DL  IQ +LGH   + T  Y
Sbjct: 282 RSVMKTIGRRAGLMCRVYPHKMRKTLGMNLKNRGVDLGIIQEVLGHANPAVTSQY 336


>gi|126667680|ref|ZP_01738648.1| hypothetical protein MELB17_10268 [Marinobacter sp. ELB17]
 gi|126627783|gb|EAZ98412.1| hypothetical protein MELB17_10268 [Marinobacter sp. ELB17]
          Length = 303

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 125/298 (41%), Gaps = 35/298 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L  L + RG S  T+  Y    RQ   +               QLS  +++ +    
Sbjct: 14  QRYLTELTL-RGKSPKTIDLYTRCLRQVCDYFETC---------PDQLSTDQLQQYFMHL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLPRALNEKQALT 136
              +     +K + + ++SF +Y+  +          +  +K     +L   L+ K+   
Sbjct: 64  VEHR-SWSLVKIARNALQSFYQYVLGK------PWEYVPIVKAPKVQTLQDVLSLKEVER 116

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGD 195
           L+          ++             Y  GLR+SE+L+LT  ++      + ++ GKG 
Sbjct: 117 LI----------SRTRKLSYQVYFLTTYSLGLRLSESLNLTIADVDSHLMRVHVRCGKGK 166

Query: 196 KIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGI----RGKPLNPGVFQRYIRQL 250
           K R VPL     KA+  Y+      DL      P +  +    + + +  G  Q+ I+Q+
Sbjct: 167 KDRFVPLPLMTLKALRRYWATHRHPDLLFPGWHPPYASVATSGKPRVMARGGVQKAIKQV 226

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
               G+      H++ HSFATH+L NG +LRSIQS+LGH    TT  YT +  +   +
Sbjct: 227 ALDCGIRKHVHIHSMGHSFATHMLENGVNLRSIQSLLGHASPVTTARYTRMTHEAQQN 284


>gi|42516778|emb|CAF05907.1| DNA integrase [Pseudomonas aeruginosa]
          Length = 295

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 65/310 (20%), Positives = 120/310 (38%), Gaps = 64/310 (20%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSNG 277
           SFAT LL +G
Sbjct: 282 SFATALLRSG 291


>gi|58616527|ref|YP_195656.1| putative integrase [Azoarcus sp. EbN1]
 gi|56315989|emb|CAI10632.1| putative integrase [Aromatoleum aromaticum EbN1]
          Length = 318

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 71/302 (23%), Positives = 129/302 (42%), Gaps = 15/302 (4%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +   +  E + +  +L   RGLS  T +       Q L     + +  + + T+R +   
Sbjct: 19  IPAPIADELRRYDDHLRDVRGLSAGTRRDRCRIVEQLLR--KKFADGVVNMATLRAV--- 73

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLPR 127
           ++R FI+++        +  +  S ++S+L+Y      +       + +  +    SLPR
Sbjct: 74  DVRRFIARQLGDSPSHSAAAQLASALRSYLRYRTICGDSVAGLNAVISSPVQWKLASLPR 133

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           AL   Q   L+       +        R  AI+      GLR  E  +L  ++I   + T
Sbjct: 134 ALRPDQVQRLL------GAFPYGRWPRRGYAIVRCALDMGLRAGEIANLLIEDIDWREGT 187

Query: 188 LRIQGKGDKIRIVPLLPSVR-KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           + ++G   + + V  LP    +A+ +Y       ++        RG R  P+     Q  
Sbjct: 188 VTLKGTKSRRQDVLPLPMATGQALADYLQHERPAISSRAIFLCRRGSRDIPITTDAVQNV 247

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           IR+  R +GLP S + H LRH+ A  L+ NG  L+ +  +L H  L TT+IY  +++ N 
Sbjct: 248 IRRACRRVGLPDSGS-HLLRHTLACRLVENGSSLKEVADVLRHRSLETTRIYAKLDTPNL 306

Query: 307 GD 308
            +
Sbjct: 307 AE 308


>gi|218133860|ref|ZP_03462664.1| hypothetical protein BACPEC_01749 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991235|gb|EEC57241.1| hypothetical protein BACPEC_01749 [Bacteroides pectinophilus ATCC
           43243]
          Length = 248

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 54/253 (21%), Positives = 109/253 (43%), Gaps = 15/253 (5%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           ++I+ +   +IR ++++ + +K   + ++      + SF  +L+      +S +  +  +
Sbjct: 7   KSIKYIVTDDIRCYLTEYQAKKKSSKVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKV 66

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K   ++    +++    + DN            + R+ A++ +L   G+R+ E + L  +
Sbjct: 67  KTGTNIKETYSDEALELMRDNC----------TELRDLAMIDMLASTGMRVGEMVLLNRE 116

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           +I  ++    + GKGDK RIV      +  +  Y +    D   N  L +        +N
Sbjct: 117 DIDFNERECVVFGKGDKERIVYFDARTKIHLQNYLNSRKDD---NPALFVSLQSPHNRMN 173

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            G  +  +RQL + LGL      H  R + AT  +  G  +  +Q +LGH R+ TT  Y 
Sbjct: 174 IGGIEVRLRQLGKRLGLNK-VHPHKFRRTLATMAIDKGMPIEQLQQLLGHRRIDTTLQYA 232

Query: 300 NVNSKNGGDWMME 312
            V   N      +
Sbjct: 233 MVKQSNVKIAHRK 245


>gi|126664435|ref|ZP_01735419.1| probable integrase/recombinase [Marinobacter sp. ELB17]
 gi|126668632|ref|ZP_01739584.1| probable integrase/recombinase [Marinobacter sp. ELB17]
 gi|126626891|gb|EAZ97536.1| probable integrase/recombinase [Marinobacter sp. ELB17]
 gi|126630761|gb|EBA01375.1| probable integrase/recombinase [Marinobacter sp. ELB17]
          Length = 346

 Score =  142 bits (358), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 70/325 (21%), Positives = 122/325 (37%), Gaps = 25/325 (7%)

Query: 19  QNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +N+L + +   R LS  T+++Y      F+ +L      +    +        I+ ++  
Sbjct: 17  RNYLHEYMPKVRALSPKTIEAYRISLECFVDYLIEVQHIQRKDISFDHFERKFIKGWLIW 76

Query: 78  RR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITT---ESNILNMRNLKKSNSLPRALNEKQ 133
            R T++   R+L   L+ +K+FL Y+ +  +           ++           L E +
Sbjct: 77  MRETKRYQPRTLTLRLTAVKAFLSYVSREDLRLVALNDAAKTLKAPTPPKKPIEYLPENE 136

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQG 192
                   +L     +     RN  +L LLY    R+ E   LT   +   + + L + G
Sbjct: 137 T-----ASILAAFDGSTMKSRRNRMLLILLYETAARVGEITGLTLGELKLTKPAHLTLSG 191

Query: 193 KGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIR---GKPLNPGVFQRYIR 248
           K DK R+VPL     + +  Y +   P   NL    PLF          L+       ++
Sbjct: 192 KRDKSRVVPLGDKTVEHLQVYLNEFYPHWANLPAVRPLFYSRHLGEPIRLSEDSVSAILK 251

Query: 249 QLRRYL-----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVN 302
           +           +P++   H +R + A  L   G  L  I  +LGH  +STT   Y    
Sbjct: 252 KAGDLARGTCSSIPVTLHCHMMRKTKAMDLYKQGIPLPIIMQLLGHESMSTTSAFYAFAT 311

Query: 303 SKNGGDWMMEIYDQTHPSITQKDKK 327
                D M    +   P I+Q D +
Sbjct: 312 ----LDMMRAAMNAATPGISQSDME 332


>gi|291521083|emb|CBK79376.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 398

 Score =  142 bits (358), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 59/296 (19%), Positives = 124/296 (41%), Gaps = 18/296 (6%)

Query: 20  NWLQNLEIERGLS-KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            +         LS  +TL +     R+   FL     +   I     ++  ++  ++SK 
Sbjct: 103 QYASYCRDFLHLSEPVTLAA----VRETKKFLKAVVPDIHDI-AWTSITANDVINYLSKE 157

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE----SNILNMRNLKKSNSLPRALNEKQA 134
           R   +   S+  +++ ++ F ++L+   I       +  L++    K + LP  L + + 
Sbjct: 158 RND-LCTASIGVTVTALRRFFRFLQHHDIVIHTSVLNLPLSVPAWSKGSILPITLTKDE- 215

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-K 193
                + L + S  +     R+ +IL      GLR SE  +L   +I  ++ T+ ++  K
Sbjct: 216 ----QSRLSNYSFPSTPTGLRDYSILLCFTELGLRCSEVANLQIGDIEWNRGTVIVRKTK 271

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
               R +P+   + KA+ +Y          +           +P +    +  IRQL   
Sbjct: 272 THAERELPMSVKLGKALEDYVMNARPISLGSPLYFKSARRMLEPASTDNIRSVIRQLYSK 331

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +G+       H LR +  ++L + G DL+++  +LGH  +STT+ Y  ++ ++  +
Sbjct: 332 VGITGWHVGTHALRRTVGSYLYNAGNDLKTVADLLGHTSVSTTKAYVRIDVESLRE 387


>gi|149198071|ref|ZP_01875119.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149198416|ref|ZP_01875461.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149200078|ref|ZP_01877103.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149136836|gb|EDM25264.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149138422|gb|EDM26830.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149138983|gb|EDM27388.1| phage integrase [Lentisphaera araneosa HTCC2155]
          Length = 294

 Score =  142 bits (358), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 130/300 (43%), Gaps = 31/300 (10%)

Query: 16  KERQNWLQNLEIERGL---SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
              Q + + +++E  L   +K T+ +Y    R+    +A           + QL   E++
Sbjct: 3   DSFQKYYRAMQLELKLQAKAKSTVDNYLRALRRVNDLIA---------SPLDQLKEEELK 53

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            + S+         ++K     +  F +Y+ KR+       L +  + +  SLP  L++ 
Sbjct: 54  LYFSELVD-TYSWSTVKMDRCALSFFYQYVLKREWK----WLEIVRIPRVKSLPDILSQD 108

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + L ++ ++             R    L  +Y  GLRISE + +   +I  D+  L ++ 
Sbjct: 109 ETLLILSHLEKA----------RYRTCLTAIYSMGLRISEGVRIQTGDICKDRMRLHVRN 158

Query: 193 -KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIR 248
            KG K R+VPL     + + +Y+ +    L L  +              ++ G  Q   +
Sbjct: 159 SKGYKDRLVPLPQVTYQMLRDYWVMHRNPLLLFPRYAGKSRSNSKTTLHMDKGGVQSAFK 218

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                 GL    + H+LRHS+ATHL+  G +LR IQ ILGH   +TT IY++++     D
Sbjct: 219 AALADSGLAKQVSVHSLRHSYATHLVEAGVNLRVIQEILGHSSPATTAIYSHLSKPVIQD 278


>gi|291326772|ref|ZP_06125804.2| putative integrase/recombinase y4rA [Providencia rettgeri DSM 1131]
 gi|291312880|gb|EFE53333.1| putative integrase/recombinase y4rA [Providencia rettgeri DSM 1131]
          Length = 322

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 127/294 (43%), Gaps = 14/294 (4%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E + +   L   RG ++ T ++      +FL     + +  I + T   L+   +R F++
Sbjct: 21  ELRRFDDYLLQARGFARSTRETSIRIVGRFLR--DKFNDGAINLST---LTPAHVRDFLA 75

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQA 134
            +        S    +S ++ + ++   +K      I  + N    +  SLP++L+  + 
Sbjct: 76  SQANVYRTPVSFSLVVSSLRGYFRWRIMQKDDLYVLIGALANPANWQQASLPKSLSTDEI 135

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-K 193
             L     L++  +T  I  R  A++      GLRI E   L+  +I     T+ ++  K
Sbjct: 136 EQL-----LNSLGQTDPIGLRADAMVRCALDLGLRIGEIARLSLDDIDWVSGTITLRRTK 190

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G +  ++PL  +   AI  Y                 +  R +P++  V    IRQ+   
Sbjct: 191 GRRDDVMPLPVTTGNAIAAYLQNGRPKTLHREVFASHKTPRERPISRSVVSIAIRQVYTR 250

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            GL   T+AH LRH+ A  LL+ G  ++ I  IL H  L+ T+IY  ++S+N  
Sbjct: 251 AGLQY-TSAHLLRHTMANRLLATGASIKDIADILRHRSLNATRIYAKLDSRNLA 303


>gi|149200435|ref|ZP_01877450.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149200455|ref|ZP_01877470.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149136449|gb|EDM24887.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149136469|gb|EDM24907.1| phage integrase [Lentisphaera araneosa HTCC2155]
          Length = 294

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 130/300 (43%), Gaps = 31/300 (10%)

Query: 16  KERQNWLQNLEIERGL---SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
              Q + + +++E  L   +K T+ +Y    R+    +A           + QL   E++
Sbjct: 3   DSFQKYYRAMQLELKLQAKAKSTVDNYLRALRRVNDLIA---------SPLDQLKEEELK 53

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            + S+         ++K     +  F +Y+ KR+       L +  + +  SLP  L++ 
Sbjct: 54  LYFSELVD-TYSWSTVKMDRCALSFFYQYVLKREWK----WLEIVRIPRVKSLPDILSQD 108

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + L ++ ++             R    L  +Y  GLRISE + +   +I  D+  L ++ 
Sbjct: 109 ETLLILSHLEKA----------RYRTCLTAIYSMGLRISEGVRIQTGDICKDRMRLHVRN 158

Query: 193 -KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIR 248
            KG K R+VPL     + + +Y+ +    L L  +              ++ G  Q   +
Sbjct: 159 SKGYKDRLVPLPQVTYQMLRDYWVIHRNPLLLFPRYAGKSRSNSKTTLHMDKGGVQSAFK 218

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                 GL    + H+LRHS+ATHL+  G +LR IQ ILGH   +TT IY++++     D
Sbjct: 219 AALADSGLAKQVSVHSLRHSYATHLVEAGVNLRVIQEILGHSSPATTAIYSHLSKPVIQD 278


>gi|258515632|ref|YP_003191854.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257779337|gb|ACV63231.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 335

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 67/276 (24%), Positives = 119/276 (43%), Gaps = 15/276 (5%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG--DR 86
           +   K T+Q ++ + + F   +     E      +  ++Y  IR  +     +K G   +
Sbjct: 50  KNRLKRTIQWHQENIQAFKRAMFEQGIE----LNLNNITYRTIRNNLVLYAIEKWGNQPQ 105

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++   +  +K F  +L       E+    +  LK +N+L  ALN+ Q   L     L   
Sbjct: 106 TVNMRIRTLKQFFDFLVSEGYLAENPAARVEKLKTANTLIVALNKDQVRRL-----LAVP 160

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
            +      R+  I+ LL   GLR+SE   L   ++   ++ +++ GKG K R VPL   +
Sbjct: 161 DKDTLTGFRDYTIMLLLLDTGLRLSEISGLRISDLHFTENFIKVMGKGAKERTVPLQGKL 220

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-STTAHTL 265
           +K + EY      + +      +F  I   P+     Q  +  + +  G+    T+ HT 
Sbjct: 221 KKTLREYLQHRGKEPD---HDFVFITIDNNPIKNRTIQDRLDIISKKAGVTEIRTSPHTW 277

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           RH+FA   + NGGD  S+++ILGH        Y  +
Sbjct: 278 RHTFARMYILNGGDAFSLKTILGHNSWEMVHRYVKI 313


>gi|32472354|ref|NP_865348.1| integrase/recombinase Y4QK [Rhodopirellula baltica SH 1]
 gi|32443590|emb|CAD73032.1| probable integrase/recombinase Y4QK [Rhodopirellula baltica SH 1]
          Length = 450

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 69/337 (20%), Positives = 131/337 (38%), Gaps = 59/337 (17%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++   +   Q + +++    GL+  T + Y    + F+            +    ++   
Sbjct: 113 INPNEMDAIQEFRRSMRRA-GLAIATERCYVRKLKAFMADRGLNC-----LADFDRIHAC 166

Query: 70  EIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           ++ A ++       +   +  ++   +  F + + KR++     I  +R  K S + P  
Sbjct: 167 DVEAHLTDLAVDGNVSPSTQNQAFHSLLKFFELVLKREMGK---IEAIRANKDSMA-PTV 222

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++ ++   + +            ++     I  LLYGCG+RISE   L  ++I      +
Sbjct: 223 MSPEEVGQVFEG-----------LEGVYLVIAKLLYGCGMRISETHRLRVKDIDFANKQI 271

Query: 189 RIQ-GKGDKIRIVPLLPSVRK----------------------------AILEYYDLCPF 219
            I+  KG+K R+VP+   + +                            A+   Y     
Sbjct: 272 EIRQSKGNKSRLVPMPDDLIEPLRRFVKTRDALHEHDLANGTASVYLPYALDRKYPSAHR 331

Query: 220 DLNLN--------IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           +L            + P    I    L    F  ++R+     G+    T+HT RH FAT
Sbjct: 332 ELKWQYLFASHRLSRDPRTGRIHRHHLRATTFPTHLRRAVEQAGILKHVTSHTFRHCFAT 391

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           HLL  G D+R IQ +LGH  + TT+IYT+V + +   
Sbjct: 392 HLLWQGTDIRQIQQLLGHSDVKTTEIYTHVRNPHEAK 428


>gi|331270786|ref|YP_004397223.1| integrase/recombinase [Clostridium botulinum BKT015925]
 gi|329127504|gb|AEB77447.1| integrase/recombinase [Clostridium botulinum BKT015925]
          Length = 272

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 133/298 (44%), Gaps = 34/298 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +++ L  E   S+ T+ +Y+ D ++F+ +      E      I  ++  + + ++  
Sbjct: 5   LEKFIEYLYQED-KSEKTIYTYKNDIKRFVKYFEKNKLE------ITTINMRKFKDYL-- 55

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNEKQAL 135
                +  +++ R++  I+ FL+YL    I       +++ +K  +   L   L   +A+
Sbjct: 56  LEVLLLSPKTVNRNIIAIRQFLEYLHINNI-------DIKMIKIQDQGFLDDILTNDEAI 108

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            ++           K  D R  A +  LY  G+R+SEA+S+  ++I +D  ++RI GKG 
Sbjct: 109 RMI-------KETEKARDLRAKAFICTLYYTGMRVSEAISVLSKDINED--SIRILGKGR 159

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R V +   ++K   +Y  +      +N    LF G R   ++       +++      
Sbjct: 160 KYRDVLIPKKLKKIWKDYMTVR-----INNSDKLFTG-REGGISRFTALNIVKKYGGMAK 213

Query: 256 LPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           +       H  RH +  +L+  G  + +++ + GH  +STT IYT  + K   D + +
Sbjct: 214 IKKDKVYNHAFRHLYCINLVDRGIPIDAVKDLAGHENISTTTIYTRKSKKQLLDIINQ 271


>gi|308067605|ref|YP_003869210.1| Site-specific recombinase XerC [Paenibacillus polymyxa E681]
 gi|305856884|gb|ADM68672.1| Site-specific recombinase XerC [Paenibacillus polymyxa E681]
          Length = 281

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 65/302 (21%), Positives = 130/302 (43%), Gaps = 26/302 (8%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ++  Q +  +L   +  S+ T+  Y  D  QF+ +    TE    +    +L   E + +
Sbjct: 1   MEYIQGFEAHLRS-KDRSENTVSCYIRDVLQFIAWYRGKTEN--GLDQWIELDGIEYKKY 57

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +       +   ++ R ++ +  F +++ ++    E   +++  ++           +Q 
Sbjct: 58  LQSTNQAIL---TINRKIASVNVFAQWMHQQGYIKEE--IHIEAVRNKV-------VRQY 105

Query: 135 LTLVDNVLLHTSHETKWID-ARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQ 191
             L +  L    +E   +    +  ++ LL G G+R+SE + +  ++I   + +  L++ 
Sbjct: 106 KGLAEKDLWKLRNEIHRMGNRMHICMIELLLGTGIRVSELVGIKLKDIEISERKGLLKVF 165

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           GKG+  R +PL   VRKAI  Y ++ P     +    L  G RG  L        + +  
Sbjct: 166 GKGNSFRTIPLNKDVRKAITRYLEVRPH----SESEYLCIGQRGS-LERNAINLILNKYG 220

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               + +  T H LRH+    L+     L +IQ ILGH  ++TT IYT    ++  + + 
Sbjct: 221 DR--INVKVTPHMLRHTLGYKLV-KTTPLTTIQQILGHDHVATTNIYTLTTQQDMAEALA 277

Query: 312 EI 313
            I
Sbjct: 278 NI 279


>gi|260424444|ref|YP_003212645.1| hypothetical protein Ctu_1p00690 [Cronobacter turicensis z3032]
 gi|260219252|emb|CBA34606.1| hypothetical protein Ctu_1p00690 [Cronobacter turicensis z3032]
          Length = 318

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 63/288 (21%), Positives = 115/288 (39%), Gaps = 24/288 (8%)

Query: 40  ECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSF 98
               R FL  +A       +       L    ++  +           ++   LS +K  
Sbjct: 41  RQTMRSFLHIVAGMLGAGALQRCPWGSLRRHHVQGLLEMLSASGRAPATINTYLSALKGT 100

Query: 99  LKYLKKRKITTES---NILNMRNLKKSN-SLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
            +     K+        IL +R ++ S  +  RAL  ++   L          +      
Sbjct: 101 AREAWMMKLMDTDSYQQILAVRAVRGSRLTRGRALTTEEVRALFAFC----EQDKSCKGP 156

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R++A+L ++ GCGLR SE + L  ++I++    LR+ GKG+K R+  +  +V + +  + 
Sbjct: 157 RDAAMLAVMLGCGLRRSEVVGLDYESILEPDQALRVLGKGNKERLAFMPDTVWQRLRHW- 215

Query: 215 DLCPFDLNLNIQLPLFRGIR------GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
                 +      PLF  IR       + L P      + + R   G+      H LR +
Sbjct: 216 ---TDTVRGEHPGPLFTRIRAGDDVTSERLTPQAVYHILTERRTQCGID-DCAPHDLRRT 271

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           FA+ +L NG DL +++  +GH  ++TTQ Y     + G   +     +
Sbjct: 272 FASMMLDNGEDLITVRDAMGHASVTTTQKY----DRRGDARLRRAASK 315


>gi|116619764|ref|YP_821920.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222926|gb|ABJ81635.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 412

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 71/282 (25%), Positives = 114/282 (40%), Gaps = 14/282 (4%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
            L  + GLS  TL +Y     QFL            +  +  L  T +  F+  R  +++
Sbjct: 126 YLLQDLGLSPSTLLNYVPVAEQFLA-----ERFHNAVPNVAMLRATHVTGFVL-RHARQL 179

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLPRALNEKQALTLVDNV 141
                   ++ ++SF +YL+ R +        +  +   +  +LPR L      ++++  
Sbjct: 180 SPVRAGLMVTALRSFFRYLRHRGVIATDLAACVPTVPNWSLSTLPRFLPTAAVESILECC 239

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
                  T  +  RN  IL LL   G+R  E + L+  +I      + I+GKG K   +P
Sbjct: 240 -----DRTTSVGRRNHTILLLLARLGVRAGEVVGLSLDDIDWSTGQITIRGKGGKSAQLP 294

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LST 260
           L+  V  A+ +Y                 R       N       +R+  ++ G+    T
Sbjct: 295 LVNDVGSALADYLRHDRPRSATRRVFLRNRAPLVGFGNSSTISSLVRRALKHAGVESAHT 354

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            AH LRHS AT LL  GG L  I  +L H   +TT IY  V+
Sbjct: 355 GAHVLRHSLATSLLRQGGSLDEIGELLRHQSPNTTAIYAKVD 396


>gi|15897309|ref|NP_341914.1| XerC/D integrase-recombinase protein (xerC/D) [Sulfolobus
           solfataricus P2]
 gi|284174561|ref|ZP_06388530.1| XerC/D integrase-recombinase protein (xerC/D) [Sulfolobus
           solfataricus 98/2]
 gi|13813520|gb|AAK40704.1| XerC/D integrase-recombinase protein (xerC/D) [Sulfolobus
           solfataricus P2]
 gi|261601982|gb|ACX91585.1| integrase family protein [Sulfolobus solfataricus 98/2]
          Length = 291

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 61/296 (20%), Positives = 121/296 (40%), Gaps = 58/296 (19%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR------------RTQK 82
           T++ Y    R FL F+          +  R+++  ++  +IS                ++
Sbjct: 31  TIKLYSTAVRDFLDFIN---------KDPRKVTSEDLNRWISSLLNREGKVKGDEVEKKR 81

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
               +++  +  ++ FLK++        +  +     K      +AL+E Q   +++   
Sbjct: 82  AKSVTIRYYIIAVRRFLKWI--------NVSVRPPIPKVRRKEVKALDEIQIQKVLNACK 133

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVP 201
                        +  I+ LL   GLR +E LS+  ++I  + + +R++  K  + RIV 
Sbjct: 134 RTK----------DKLIIRLLLDTGLRANELLSVLVKDIDLENNMIRVRNTKNGEERIVF 183

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
                +  + +Y            +  LF       L      R +++L + +G+ L   
Sbjct: 184 FTDETKLLLRKYI------KGKKAEDKLFD------LKYDTLYRKLKRLGKKVGIDLR-- 229

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            H LRH+FAT  L  G ++ ++Q +LGH  + TTQIYT++      D +   Y + 
Sbjct: 230 PHILRHTFATLSLKRGINVITLQKLLGHKDIKTTQIYTHL----VLDDLRNEYLKA 281


>gi|67923785|ref|ZP_00517248.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera
           watsonii WH 8501]
 gi|67854373|gb|EAM49669.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera
           watsonii WH 8501]
          Length = 362

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 127/358 (35%), Gaps = 65/358 (18%)

Query: 1   MEGNNLP-EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
           M     P ++   +LL     +++    +   +  T+++Y C  +QF  +        + 
Sbjct: 1   MLTQTTPNDLTPTDLLDNFAAFVRLDTADGNAADDTVKTYACTVKQFFSWCHVQRLHPL- 59

Query: 60  IQTIRQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
                + +  +I+ +       Q     ++   L+ ++ F     +R +   +  L ++ 
Sbjct: 60  -----EATRDDIKLYRRWLVEIQDYKCATIALKLTVVRRFYAGAVERGLILANPALGIKP 114

Query: 119 LKK---SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
            ++          L E + + L++        E      R+  ++ ++   G R  E   
Sbjct: 115 PRENIDPAERINYLEEPEVIGLLE----SLPTENTIGGLRDRFLVAVMVLEGCRTVEMHR 170

Query: 176 LTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRG 232
               +I+       +R+ GK  + RIVPL P + K + +Y +        LN   PLF  
Sbjct: 171 ACIGDIVKRGGDIGIRVSGKRSR-RIVPLTPDLAKLLNKYLNARKRSGEVLNADTPLFIA 229

Query: 233 IRGK----PLNPGVFQRYIRQLRRYLGLP------------------------------- 257
           +  +     L+    QR I +  R  GL                                
Sbjct: 230 LDKRTYGGRLSRRSIQRLIDKYLRAAGLKEQPKKNKGKKPASFQEYQPSNGEQQRPSQSA 289

Query: 258 -----------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
                         +AH+LRH+  T  +  G DLR +Q +LGH    TT +Y +V  +
Sbjct: 290 SSTSTKFQQPQRQLSAHSLRHTAGTLAIRAGSDLRQVQDLLGHADPRTTALYAHVADR 347


>gi|116622058|ref|YP_824214.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225220|gb|ABJ83929.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 406

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 60/304 (19%), Positives = 116/304 (38%), Gaps = 16/304 (5%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E  +  L    + +        G+S+ TL     D      FL          ++I + +
Sbjct: 107 EKCAPPLSPLMKEYCHYRHAHGGVSESTL---VRDVETARGFLGQLQRRT---KSIARAN 160

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSL 125
             ++  F+     + +  R++  + S +++FL++L             +  L+       
Sbjct: 161 LADVDGFVQALAAR-LSKRTVADTCSSLRAFLRFLHMTGRLPTDLAGGVIALRYRIDERP 219

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           PR L       ++  +       T     R+ AI+ LL   GL  +E L +  +++    
Sbjct: 220 PRCLPWSDVQKILRGI-----SRTAAPGKRDYAIVLLLATYGLGAAEVLGIRLEDVDWQG 274

Query: 186 STLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
             LR+ + K      +PLLP+V +A+  Y             + L   +  +P+  G  +
Sbjct: 275 GVLRVCRPKTKVSIELPLLPAVAQALSAYLRWERPPARSVPHIFLRENMPYEPITSGAIR 334

Query: 245 RYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             IR      G+      AH  R S A+  + +G +++ +  ILGH   S+T +Y  V  
Sbjct: 335 HRIRYYAGLAGISTKVIGAHAFRRSHASRQIDSGANVKVVSDILGHRSSSSTSVYVRVAL 394

Query: 304 KNGG 307
           +   
Sbjct: 395 ERLR 398


>gi|225570683|ref|ZP_03779706.1| hypothetical protein CLOHYLEM_06783 [Clostridium hylemonae DSM
           15053]
 gi|225160510|gb|EEG73129.1| hypothetical protein CLOHYLEM_06783 [Clostridium hylemonae DSM
           15053]
          Length = 262

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 95/251 (37%), Gaps = 10/251 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +++ LE  + +S  T  +Y  D  +   +L  +      I+     +   + +F+  
Sbjct: 22  VKEYIEYLEARKHISANTRSAYLRDLERMYGYLREH-----GIEQFEDATAATLNSFLLF 76

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +G  ++ R+ + ++ F +YL ++KI  +     M   K    LP++   +    +
Sbjct: 77  LEKNGLGGATIARNAAVVRGFYQYLFRKKIIEDDITEMMEAPKVERKLPKSARREDIDKI 136

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +                R+ A++ +L   G+ + E + L  +++  +   ++    G++ 
Sbjct: 137 L-----SVPEGGSPKALRDRAMIEVLRCTGILVEELIKLRTEDVKLELGYVQCHFPGNQN 191

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
                 PS+        +     +       LF  +RG  ++   F + IR+        
Sbjct: 192 AYPLDGPSLGALRRYLEEGRGKLIRREQDEVLFPNVRGAYMSRQGFWKVIRRYSEETDGE 251

Query: 258 LSTTAHTLRHS 268
              T   +RH+
Sbjct: 252 QKITPSMIRHT 262


>gi|313680019|ref|YP_004057758.1| integrase family protein [Oceanithermus profundus DSM 14977]
 gi|313152734|gb|ADR36585.1| integrase family protein [Oceanithermus profundus DSM 14977]
          Length = 345

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 66/324 (20%), Positives = 135/324 (41%), Gaps = 28/324 (8%)

Query: 14  LLKERQNWLQNLEIERGL--SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           L++  + +L  L+  +    S  TL++Y    R FL + A+          I + +  ++
Sbjct: 30  LVELLEAYL-FLKGRKKALVSPETLRTYRTALRDFLAW-AWPEGAPGPRVPILKATGDDL 87

Query: 72  RAFISKRRTQK---------IGDRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRNLK 120
             ++++ +T+          +   S+   L+G+++F + L+     +  +          
Sbjct: 88  DRYLNELQTRGGHLPENARPLKPASVATYLAGVRAFYRALEWAGAAVAPDDVHAPADPTP 147

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +    P AL  +    L++    H          R+ A++ L+   GLRISE + L   +
Sbjct: 148 REERRP-ALPLELYRRLLE----HLDDPEDAGKLRDRAMVRLMAEAGLRISEVIHLDEAD 202

Query: 181 IMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-----IR 234
            ++ +  + ++ GKG K R VP+   +   +  +  L         +  LF        R
Sbjct: 203 FLEAERLVVVRSGKGGKQRTVPVTRGLAAELAAWRRLR-RAYAEPGESALFVNTGGRKNR 261

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           G+ L+  + ++ + +    LG P     AH LRH+  T      GDL     +LGH  ++
Sbjct: 262 GRRLSASLLRKRLARYYEALGFPPRYRGAHMLRHTAGTRFYRATGDLHVTARLLGHANVN 321

Query: 294 TTQIYTNVNSKNGGDWMMEIYDQT 317
           T+ IY  ++ +   D +  + D+ 
Sbjct: 322 TSAIYAKMDLEGLRDAVDRLEDEA 345


>gi|307721075|ref|YP_003892215.1| integron integrase [Sulfurimonas autotrophica DSM 16294]
 gi|306979168|gb|ADN09203.1| integron integrase [Sulfurimonas autotrophica DSM 16294]
          Length = 338

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 67/309 (21%), Positives = 118/309 (38%), Gaps = 59/309 (19%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSL 88
             S  T ++Y    + +++F           +    ++  EI  F++    +K +   + 
Sbjct: 19  HYSISTEKTYIHWIKHYILFHNK--------KHPIDMAKKEIEEFLTFLAVKKQVSPTTQ 70

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            ++ S I    K +     T E NI  +R  ++   +P  L +++   ++ N        
Sbjct: 71  NQAFSAILFLYKEVLGLD-TVEWNIQALRA-QERKHIPVVLTKEEVQKVLQN-------- 120

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD------------- 195
              +      +  L+YGCGLR+SE L++  ++I    + L I                  
Sbjct: 121 ---LTGIYKLVTTLMYGCGLRMSEVLNIRIKDIDFGFNKLYIWDSKSLKDKTIPLPLKLK 177

Query: 196 ---KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----------LFRGI--------- 233
               +++  +     K + + Y           + P          LF            
Sbjct: 178 EELLVQVQRVQDIHVKDLEDGYGSVYLPFAYEKKYPNAKYETKWQFLFPMRNISKDPRSN 237

Query: 234 --RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
             R   ++P    R I+   +   L    T+H  RHS+ATHLL  G DLRSIQ +LGH  
Sbjct: 238 LKRRHHIHPQTLGRNIKIASKKANLNKRVTSHIFRHSYATHLLQTGIDLRSIQELLGHKS 297

Query: 292 LSTTQIYTN 300
           + TT IYT+
Sbjct: 298 VETTMIYTH 306


>gi|224542974|ref|ZP_03683513.1| hypothetical protein CATMIT_02168 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524112|gb|EEF93217.1| hypothetical protein CATMIT_02168 [Catenibacterium mitsuokai DSM
           15897]
          Length = 354

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/313 (19%), Positives = 121/313 (38%), Gaps = 25/313 (7%)

Query: 10  VSFELLKE---RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           +S E+L +    Q +L   +I+ GLSK T+  Y     ++L F           +++ + 
Sbjct: 45  ISTEVLDDNELIQRFLIQKKID-GLSKRTIDYYRVTLEKWLHFYIK--------KSVLEW 95

Query: 67  SYTEIRAFISKRRTQ--KIGDRSLKRSLSGIKSFLKYLKKRKITTE-SNILNMRNLKKSN 123
           +  ++R   ++R      +   ++        SF  +L         + +  M+ +K   
Sbjct: 96  TRDDVRMHFARRMIDYPDVSKVTINNDRRNFSSFFTWLMDEGYLRNGNPMKAMKKIKVDK 155

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDAR-----NSAILYLLYGCGLRISEALSLTP 178
            +   + + Q   + D +    S              + AI  LL   G RI E  +   
Sbjct: 156 VIKEPIPDDQIEVMRDKLAEKKSANKIGTRLWLKAVRDQAIFELLLTTGCRIGELTTAKI 215

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN----LNIQLPLFRGIR 234
           +++  ++  +++ GKG K R+  L       + ++ +      N    ++      +   
Sbjct: 216 KDLDLERKEIKVFGKGAKERVCYLNTLSVLRMQQWLEARKDIENEYIFVSCDSANGKKGN 275

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              L     +  IR+L R  G   +   H  R + AT  L  G  +  +Q +LGH ++ T
Sbjct: 276 HARLQISGVEINIRKLGRECGFE-NIHPHRFRRTAATTALRKGMPIEQVQLMLGHEQIDT 334

Query: 295 TQIYTNVNSKNGG 307
           T IY   ++K+  
Sbjct: 335 TMIYAKTDTKSVK 347


>gi|225568371|ref|ZP_03777396.1| hypothetical protein CLOHYLEM_04448 [Clostridium hylemonae DSM
           15053]
 gi|225162819|gb|EEG75438.1| hypothetical protein CLOHYLEM_04448 [Clostridium hylemonae DSM
           15053]
          Length = 330

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 54/290 (18%), Positives = 125/290 (43%), Gaps = 25/290 (8%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L + + +L +  +E G S  T++ Y  +  + L ++          + ++ ++   I  +
Sbjct: 52  LVDLEEFLMSKALE-GKSPGTVKRYRYELYRLLSYIN---------KNVKDITDGNISGY 101

Query: 75  I-SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           + + +  +++ +++LK   +   SF  +L+ R    ++ +  +  +K    + +   +++
Sbjct: 102 MRTYKAIRQVTNQTLKNVRAVYSSFFIWLRDRDRIRKNPMALVEAIKVEQKIRKPYTDEE 161

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+ +              R+ A++   Y   +R+SE  +L  +++      L + GK
Sbjct: 162 RELLLRSCKT----------LRDKAMMEFFYSTAVRVSELAALNREDVHFVSKDLIVMGK 211

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R V L       + EY +      + N  L +        L     +  IR+  + 
Sbjct: 212 GNKERTVYLNDRTNMYMKEYLESRT---DSNQALFVSLKKPHGRLGKTGIEDIIRRTGQI 268

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            G+      H  R + AT+ L+ G  ++ +  +LGH +L TT +Y +V+ 
Sbjct: 269 AGVER-AYPHRFRRTAATNALNRGMPVQEVAQLLGHAKLETTMVYCSVDQ 317


>gi|220909514|ref|YP_002484825.1| integrase family protein [Cyanothece sp. PCC 7425]
 gi|219866125|gb|ACL46464.1| integrase family protein [Cyanothece sp. PCC 7425]
          Length = 373

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/349 (18%), Positives = 127/349 (36%), Gaps = 69/349 (19%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
            ++  +++++ LE   G S  T+Q+Y    + F  FL             +QL    +  
Sbjct: 24  FVEPVKSYVRYLESV-GRSPNTIQAYLNHLKLFWEFLGGAD------LDWKQLKLEHLAD 76

Query: 74  FISKRR------------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI-------- 113
           F++  R              K  + ++   LS +  F  + ++        +        
Sbjct: 77  FMTWLRRPDPRVISLQPVEAKRSEATVNLVLSAVYGFYDFHERNGTIEGIELYRHQFQPG 136

Query: 114 -----------------LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
                            + +  +K    LP+ L+E+    +++               R+
Sbjct: 137 RKYKSFLHHVNKGKETRIRLLKIKPPRKLPKTLDEEAVKRVIEACKR----------IRD 186

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-------QGKGDKIRIVPLLPSVRKA 209
             ++ LL+  G+RI +AL L  +++    + ++I        G   K R    L   ++ 
Sbjct: 187 KFLITLLHETGMRIGQALGLRHEDVHSWDNEIQIVPRDDNINGARAKTRDTYKLHVSKEL 246

Query: 210 ILEYYDLCPFDLNLNIQ-LPLFRG----IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           +  Y      +   +I    +F      +RG PL+    Q   R+L R     +  T H 
Sbjct: 247 MGLYSAYVTTEYPEDIDSDYVFVNIWEGMRGYPLSYSTVQALFRRLSRDA--EVRVTPHM 304

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMME 312
            RH+ AT L+  G  +  +Q  LGH  + TT   Y +V +++      +
Sbjct: 305 FRHTHATDLIRTGMQMSYVQKRLGHASIQTTIDTYVHVTNEDMKHEYQK 353


>gi|323483758|ref|ZP_08089138.1| phage integrase family Integrase/recombinase [Clostridium symbiosum
           WAL-14163]
 gi|323402949|gb|EGA95267.1| phage integrase family Integrase/recombinase [Clostridium symbiosum
           WAL-14163]
          Length = 289

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 71/304 (23%), Positives = 121/304 (39%), Gaps = 44/304 (14%)

Query: 2   EGNNLP-EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           +G N P E+ S   + E QN+L   + ER  S+ T+  Y  D + F  FL     +K  +
Sbjct: 3   QGQNKPDELFSCTRIAEFQNYLH--QEER--SRNTITKYIRDLKVFFTFLDGQPMDKEAL 58

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
              +            K  TQ     S+   L+ +  FL +        E   L ++ LK
Sbjct: 59  LDWK------------KHLTQTHAPASVNSMLASVNKFLDW-------LELPGLKVKPLK 99

Query: 121 KSNSL----PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
               +     + L  ++   L+       ++           +L  +   G+R+SE   +
Sbjct: 100 IQRQIFSNPKKELTAEEYRRLIKAAESRQNNRLS-------LLLQTICSTGIRVSELKFI 152

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
           T ++    ++    +GK    RI+ L P + +A+  Y      D  +     +F    G 
Sbjct: 153 TAESAKTGRAEADCKGK---TRIIFLPPDLCRALRHYCRERGIDAGI-----IFCTKNGC 204

Query: 237 PLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           PL+     + ++ L    G+ P     H LRH FA    +   DL  +  +LGH  +STT
Sbjct: 205 PLDRSNIWKDMKMLCDSAGVEPGKVFPHNLRHLFARTYYALEKDLSRLADLLGHSNVSTT 264

Query: 296 QIYT 299
           +IYT
Sbjct: 265 RIYT 268


>gi|322688558|ref|YP_004208292.1| phage integrase [Bifidobacterium longum subsp. infantis 157F]
 gi|320459894|dbj|BAJ70514.1| putative phage integrase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 587

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/332 (18%), Positives = 121/332 (36%), Gaps = 26/332 (7%)

Query: 12  FELLKERQNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
            +  +  ++WL + L   RG S  T+++Y      ++ +L      + +           
Sbjct: 250 PDFWRVARDWLHHWLPKVRGSSPKTVEAYRIGLESYVRWLETTEGTQRSHIGFGHFDRAR 309

Query: 71  IRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTE---SNILNMRNLKKSNSLP 126
           +  ++   RT+    DR++   ++ ++ FL +            ++   +R    +    
Sbjct: 310 LGRWVEWMRTERGYSDRTIMLRMTTMRVFLDHAGLEHPALTALGNDAAGIRVKPPARKPV 369

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ- 185
             L E+    L+       +   +     N  +L L+Y    RI E  +LT  ++  D+ 
Sbjct: 370 DHLGEEHTKALLTAWGTGDAKSRR-----NRMLLILMYDTAARIGELAALTIADVGMDKP 424

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRG---KPLNPG 241
           + + + GK  K R+VPL    R  +  Y +      ++     PLF   R    +PL+  
Sbjct: 425 ARVTLTGKRGKSRVVPLGERTRTHLAAYLEEFHPGPSMRDGDRPLFHSTRNGAIQPLSVD 484

Query: 242 VFQRYIRQLRRYL------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                ++             +P     H +R + A  L   G  L  I  +LGH  +STT
Sbjct: 485 RIDEILKTAAARARRGTCPSMPERVHCHLIRRTRAMDLYQQGVPLPLIMQLLGHESMSTT 544

Query: 296 Q-IYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
              Y         D M +  D  +P      +
Sbjct: 545 SAFYAFAT----LDMMRKAVDAANPGPDPSKE 572



 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 71/196 (36%), Gaps = 17/196 (8%)

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
               P  L +++A   +      T         ++ A   L+  CGLR  E   L   ++
Sbjct: 21  PRPTPYLLTDREAALFLRA--AGTLESPSPWAWQSRAFFMLMACCGLRTREVRRLAVGHV 78

Query: 182 MDDQSTL-RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                ++  +  K  + R +P+   V   +LE  D    +   + +   F    G P++P
Sbjct: 79  DHKARSIDVVDSKAGRSRRLPVGDEVAAELLE-CDQRSRERFGDDRPAFFVTSTGNPVSP 137

Query: 241 GVFQRYIRQLRRYLGLP-----LSTTAHTLRHSFATHLLSN----GGD----LRSIQSIL 287
           G+     R++    GL           +  RH FA   +      G D    L  + + +
Sbjct: 138 GMPGVVFRRVWTRAGLEWPQAGKRPRPYDFRHRFAFANIERWTRDGVDVMAMLPYLAAYM 197

Query: 288 GHFRLSTTQIYTNVNS 303
           GH  + +T  Y + + 
Sbjct: 198 GHAGIDSTLYYVHASP 213


>gi|323139352|ref|ZP_08074404.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322395418|gb|EFX97967.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 317

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 57/291 (19%), Positives = 110/291 (37%), Gaps = 22/291 (7%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T ++Y      FL +      E+  + +I  +    I A++    T+     + K+ L
Sbjct: 37  PHTRRAYGRAIGDFLAWC-----EQRGLASIVDIEPLHIGAYVEAM-TRSHSAPTAKQRL 90

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR--ALNEKQALTLVDNVLLHTSHETK 150
           + I+    +L   +I   +   ++R  K    + +   L+  +A  L+D++ +       
Sbjct: 91  AAIRMLFDWLVTGQIVPTNPAASVRGPKHVVKVGKTPVLDPAEARALLDSIDVTAP---- 146

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKA 209
            +  R+ A++ L+     R+  AL++  +++      L ++  +    R         +A
Sbjct: 147 -VGLRDRALIGLMIYSFARVGAALAMKVEDVYVQNRRLWVRLHEKGGKRHEMPCHHNLEA 205

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGI-------RGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            L  Y      L  + + PLFR I          PL        IR+     G+      
Sbjct: 206 YLHAYIDGCG-LASDPKAPLFRTIGRGAGALTFTPLPQANAYAMIRRRAVAAGIATKVGN 264

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           H+ R +  T  L NGG L    S+  H    TTQ+Y     +   D +  +
Sbjct: 265 HSFRATGITAYLKNGGTLEKAASMANHASTRTTQLYDRRRDEMSLDEVERV 315


>gi|218203973|ref|YP_002364826.1| integrase family protein [Cyanothece sp. PCC 8801]
 gi|218169724|gb|ACK68459.1| integrase family protein [Cyanothece sp. PCC 8801]
          Length = 362

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 129/358 (36%), Gaps = 65/358 (18%)

Query: 1   MEGNNLPEIVS-FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
           M  N  P  +S  +LL     +++    +   S  T+++Y C  +QFL +        + 
Sbjct: 1   MLTNATPSPLSEADLLARFAQFVRLDTADGNASDDTVKTYACTVKQFLGWCDAQRLHPL- 59

Query: 60  IQTIRQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
                  +  +++++       Q+    ++   L+ ++ F     +R +   +  L ++ 
Sbjct: 60  -----DATRDDLKSYRRWLVDGQQYKCATIALKLTVVRRFYAGAVERGLILANPALGIKP 114

Query: 119 LKK---SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
            ++          L E +   L++        E      R+  ++ ++   G R  E   
Sbjct: 115 PRETIDPAERINYLEEAEVTRLLE----SLPTENTVGALRDRFLVAVMVLEGCRTVEMHR 170

Query: 176 LTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRG 232
            +  +I+       +R+ GK  + RIVPL P + K + +Y +        L    PLF  
Sbjct: 171 ASIGDIVKRGGDIGIRVSGKRSR-RIVPLTPDLAKLLNKYLNARKRSGEALLADTPLFIA 229

Query: 233 IRGK----PLNPGVFQRYIRQLRRYLGLP------------------------------- 257
           +  +     L+    QR I +  +  GL                                
Sbjct: 230 LDKRTYGGRLSRRSIQRVIDKYLQASGLKEQPTKQKSPKRASNQSHQPSSGEKQRSSQSA 289

Query: 258 -----------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
                         +AH+LRH+  T  +  G DLR +Q +LGH    TT +Y +V  +
Sbjct: 290 SSTSTKFQQPERQLSAHSLRHTAGTLAIRAGSDLRQVQDLLGHADPRTTALYAHVADR 347


>gi|312111596|ref|YP_003989912.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|312112616|ref|YP_003990932.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|311216697|gb|ADP75301.1| integrase family protein [Geobacillus sp. Y4.1MC1]
 gi|311217717|gb|ADP76321.1| integrase family protein [Geobacillus sp. Y4.1MC1]
          Length = 379

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 64/369 (17%), Positives = 144/369 (39%), Gaps = 82/369 (22%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+ L+   G S+ TL++Y    +Q+ +FL          +  R++   ++  F++  R
Sbjct: 30  KYLKYLDTT-GKSRNTLKTYCYALKQYFVFLQEKK------KDYREVRLEDLVEFVAWLR 82

Query: 80  T--------------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI------------ 113
                           K  ++++  +++ + +F  YL + +      +            
Sbjct: 83  NPYESAKVTPLQPVKAKKTEKTINLTITAVTNFYDYLYRNEEIQNDMVDKLLKQVFTGGR 142

Query: 114 -----------------LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
                             ++  +K+     + L +++   L++             + R+
Sbjct: 143 TRYKDFLYHVNKNKPSNRHILKVKEPRKKLKVLTKEEVQQLIEAT----------TNIRD 192

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQ-----------GKGDKIRIVPLLP 204
             ++ LL+  GLRI EALSL  ++ + D  +  RI+                 R + +  
Sbjct: 193 RLLIQLLFETGLRIGEALSLFIEDFIFDHKNGHRIRLVNRGELENGAKLKTGEREIYVSQ 252

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRG----KPLNPGVFQRYIRQLRRYLGLPLST 260
           ++   + +Y      +L+L+    +F  +RG    +P+     +   ++LR+  G+    
Sbjct: 253 ALMNLLDDYLYEVVDELDLDTNF-VFVKLRGKNIGQPMTYSDVEALFKRLRKKTGI--HV 309

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQTHP 319
             H LRH+ AT       D++ +Q  LGH ++ TT  +Y + + +   +   +       
Sbjct: 310 HPHLLRHTHATMYYQQTKDIKQVQERLGHSQIQTTMNLYLHPSDEEIRENWEKAQHAF-- 367

Query: 320 SITQKDKKN 328
            IT+K  K+
Sbjct: 368 DITKKTGKD 376


>gi|90580685|ref|ZP_01236489.1| Tn554, transposase A [Vibrio angustum S14]
 gi|90438142|gb|EAS63329.1| Tn554, transposase A [Vibrio angustum S14]
          Length = 359

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 58/330 (17%), Positives = 118/330 (35%), Gaps = 67/330 (20%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR------------- 78
           S  T+++Y    + +  FL   T++ I+      +   ++  FI                
Sbjct: 41  SPNTIKAYSHHLKLYWQFL---TQDDIS---WTDICIEDLANFIRWLQSGDQDGVISIVK 94

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----------------------- 115
           R  K  ++++   ++ + +F  Y  +     +  I                         
Sbjct: 95  RDAKRTNKTINLIMAAVSAFYDYHSRSGKVADLKIYRDGAFSGKYKSFLHHITSGKSIQS 154

Query: 116 -MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            +  LK+     + L + Q   +++             + R+  I+ L+Y  G+RI + L
Sbjct: 155 RVLKLKEPKRGLKTLTKPQVQQVIEAC----------NNLRDKFIICLMYETGMRIGQVL 204

Query: 175 SLTPQNIMDDQSTLRIQGKGDKI-------RIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
            L  ++I    + + I+ + +         R   L+      +  Y D    +       
Sbjct: 205 GLRHEDIKSGDNQIAIRFRSNNENNARSKSREDNLVDVSSSIVSLYTDYFIHEYGEVESD 264

Query: 228 PLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
            +F  +       P+  G      +++ +  G+    T H  RH+ AT LL  G DL  I
Sbjct: 265 YVFVNLWDGEIGAPMKYGSVITLFKRISKKTGID--VTPHIFRHTHATELLRAGWDLAYI 322

Query: 284 QSILGHFRLSTTQ-IYTNVNSKNGGDWMME 312
           Q  LGH  + TT  IY +++S +    + +
Sbjct: 323 QKRLGHSDIQTTANIYAHLSSDDMKKELAK 352


>gi|160903194|ref|YP_001568775.1| integrase family protein [Petrotoga mobilis SJ95]
 gi|160360838|gb|ABX32452.1| integrase family protein [Petrotoga mobilis SJ95]
          Length = 306

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 64/300 (21%), Positives = 116/300 (38%), Gaps = 40/300 (13%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L+  +  +  T+  Y+   + +  F+  Y            L+      ++ +  
Sbjct: 23  EFLSYLKFVKRRADSTIYEYKKILKSYKKFVQIYG-----------LTRGCFLKYLEE-- 69

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +  R++K  +  +KSFL YL +    +        N K  + +P+ L E Q      
Sbjct: 70  ISNLSQRTIKLRIVVLKSFLNYLYENGEISGKKYWKDANAKIPSDVPKGLTESQIKVFFS 129

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKI 197
            +           D  +     LL   GLRISEAL L  + I+   D + L I GKG+++
Sbjct: 130 VIE----------DKFDKTFYSLLLKTGLRISEALWLEKEQIIFYNDHAELVINGKGNRV 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R + +     + ++ +            +  +F      P+     +R  +         
Sbjct: 180 RYLKISKQYAEQLITF-AEKNTPKGAQGKKYIFSNDNDVPITSRTMERRFKDYVIKANNK 238

Query: 258 L--------------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +              + T H LRH+ A  LL++G +L  ++ ILGH  +STT IY   +S
Sbjct: 239 IDQLRTKGYNNINYINATPHALRHTCAKRLLNSGKNLEEVRYILGHTTISTTGIYVRSDS 298


>gi|190015612|ref|YP_001967367.1| site-specific tyrosine recombinase XerS [Bacillus cereus]
 gi|208702064|ref|YP_002267276.1| integrase/recombinase, phage integrase family [Bacillus cereus
           H3081.97]
 gi|217956900|ref|YP_002335996.1| site-specific tyrosine recombinase XerS [Bacillus cereus AH187]
 gi|229142253|ref|ZP_04270775.1| Integrase [Bacillus cereus BDRD-ST26]
 gi|116584519|gb|ABK00636.1| phage integrase family protein [Bacillus cereus]
 gi|208657919|gb|ACI30289.1| integrase/recombinase, phage integrase family [Bacillus cereus
           H3081.97]
 gi|217068588|gb|ACJ82836.1| integrase/recombinase, phage integrase family [Bacillus cereus
           AH187]
 gi|228641191|gb|EEK97500.1| Integrase [Bacillus cereus BDRD-ST26]
          Length = 361

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 76/336 (22%), Positives = 131/336 (38%), Gaps = 43/336 (12%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-----------KITIQTIRQLSYTE 70
           ++  E++  LS  TL +Y  +  +FL +L                  + I T+  L   E
Sbjct: 25  IEYAEMKTALSPATLYAYITEYEKFLKWLVNNRLAVDNGKVVTDICDVPITTLETLPLNE 84

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKY-------LKKRKITTESNILNMRNLKKSN 123
            R+F    + + I  R++ R+ S +KS  KY              + + +  +   K+  
Sbjct: 85  ARSFQRYLQGEGIETRAINRTFSALKSLFKYLAQNTENEHGENYISRNVMEKIELHKEKV 144

Query: 124 SLPR--------ALNEKQALTLVDNVLLHTSHETKWIDAR-----------NSAILYLLY 164
                         NEK  +  +  +        K I  R           + AI+ L+ 
Sbjct: 145 DAAARADDVANMIFNEKDDVAFLQFLANDYGEMLKDISPRKYSFFQRDKERDIAIISLIL 204

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-L 223
           G GLR+SE  SLT  +I   Q T+++  KG+K   +    S    + EY  + P   N  
Sbjct: 205 GTGLRVSEVASLTISSINFRQGTVKVTRKGNKRSSILATRSCLDDVQEYIKVRPSKYNCP 264

Query: 224 NIQLPLFRGI---RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
             +  LF      +   L     Q+ I +           + H LRH++AT+      DL
Sbjct: 265 ENEDLLFVTNYKGKFTQLTVRAIQKLIDKYTSA--FDEKRSPHKLRHTYATNHYKENKDL 322

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             ++  LGH  +  T IYTN+N+K   + + ++  +
Sbjct: 323 VLLRDQLGHTSVEVTSIYTNINNKKKREAIDKLERR 358


>gi|224826550|ref|ZP_03699651.1| integron integrase [Lutiella nitroferrum 2002]
 gi|224601151|gb|EEG07333.1| integron integrase [Lutiella nitroferrum 2002]
          Length = 274

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 53/276 (19%), Positives = 106/276 (38%), Gaps = 52/276 (18%)

Query: 66  LSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           +   E+  F++    Q+ +   +  ++L+ +    + +  R +     +  +R ++K + 
Sbjct: 1   MGPAEVETFLNHLAVQRQVAASTQSQALNALVFLYENVLTRPLGQ---MQGLRRVQKRHR 57

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           +P  L + +  T++             ++     +  L+YG GLR+ E ++L  +++   
Sbjct: 58  VPVVLTQDEVKTVL-----------SLMEGTCRLMAELMYGAGLRVHECVTLRIKDVDFS 106

Query: 185 QSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN------------------- 224
             T+ ++  KG K R   L   +   + ++          +                   
Sbjct: 107 TRTISVRNSKGSKDRTTVLPAQLGSKLQQHLLRVATQHKEDLARGAGLAPMPDALSRKYP 166

Query: 225 ------IQLPLFRG-----------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                      F             +     +    QR  ++      +    + H LRH
Sbjct: 167 SASSSFAWQYAFPSTALRPWGDSGRLVRWHTSDTTIQRAFKKAVAQAQIHKHASVHCLRH 226

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           SFATHLL+ G D+R+IQ +LGH  L TT IYT+V  
Sbjct: 227 SFATHLLAAGTDIRTIQLLLGHRSLQTTMIYTHVLQ 262


>gi|146284555|ref|YP_001165508.1| phage integrase family protein [Enterobacter sp. 638]
 gi|145320688|gb|ABP62834.1| phage integrase family protein [Enterobacter sp. 638]
          Length = 329

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 68/323 (21%), Positives = 132/323 (40%), Gaps = 26/323 (8%)

Query: 2   EGNNLPEIVSFEL-LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF-YTEEKIT 59
           E + LP +   EL L   + +L        LS  + +S       FL  +A       + 
Sbjct: 21  EDDFLPVLAGGELPLSPARAYL--------LSLNSPRS-RQTMASFLNIVAGMLGAASLE 71

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
             +   L    +       R       ++   LS +K   K     K+    +  ++R +
Sbjct: 72  TCSWGSLRRHHVMGVTELLRDTGRATATVNTYLSALKGVAKEAWMLKLMDVESFQHIRAV 131

Query: 120 K--KSNSLPR--ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +  + + LPR  AL  ++   L             ++  R++A+L ++ GCGLR SE + 
Sbjct: 132 RNLRGSRLPRGRALPAEEIGKLFAVCEADA----TYLGVRDAALLGVILGCGLRRSETVG 187

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL--FRGI 233
           L+  +++  +  LR+ GKG+K R+  +     + +  + D    +    +   +  F  +
Sbjct: 188 LSLSDVVTHERALRVLGKGNKERLAYMPAGTWQRLQTWIDQVRGEAAGPLFTRIRRFDTL 247

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
               L        ++  +R   +      H LR +FAT +L NG DL +++  +GH  ++
Sbjct: 248 TNDRLTDQAVYHILQMRQRQAQIER-CAPHDLRRTFATAMLDNGEDLITVKDAMGHASVT 306

Query: 294 TTQIYTNVNSKNGGDWMMEIYDQ 316
           TTQ Y     + G + + +  D+
Sbjct: 307 TTQQY----DRRGEERLRQARDR 325


>gi|315648604|ref|ZP_07901701.1| integrase family protein [Paenibacillus vortex V453]
 gi|315275983|gb|EFU39331.1| integrase family protein [Paenibacillus vortex V453]
          Length = 305

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 66/302 (21%), Positives = 121/302 (40%), Gaps = 20/302 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFI- 75
            Q+++  L     L+  TL+ Y  D + F+ +    Y +E+  I  I  ++   +  +  
Sbjct: 15  IQDFIHALTTHEDLNPKTLKEYASDLKHFIGWFETAYHQEEEIIFRIEDVATPTLTRYRE 74

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           + ++  ++   ++ R L  +K F ++              ++ + +    PR + +K+  
Sbjct: 75  AAQKIMELKPATINRRLITLKRFFEWAVSESRIRRDPSKPVKLVPEEKVSPRQMTDKEEA 134

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ--STLRIQ-G 192
            LV       S        R+  IL +++  GLR  E   L P +I   +    L ++ G
Sbjct: 135 ALVAAAEHGGS-------LRDQTILIVMFHTGLRSMEVCDLAPGDIQIGKRSGQLTVRSG 187

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLR 251
           K +K R VPL  + R A+ +Y    P          LF   +    L     +  I++  
Sbjct: 188 KRNKQREVPLNATCRVALEKYLAELPPH-----SPFLFPSEKTGDRLTERALRHLIQKYM 242

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +   L    +AH LRH F   +  N   L  +  I+GH  L TT IY      +    + 
Sbjct: 243 KAARLE-GLSAHDLRHRFGYVMAEN-TPLHRLAQIMGHDSLDTTMIYVKATRADLQAEVE 300

Query: 312 EI 313
           +I
Sbjct: 301 KI 302


>gi|307592267|ref|YP_003899858.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306985912|gb|ADN17792.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 338

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/301 (20%), Positives = 115/301 (38%), Gaps = 41/301 (13%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           TL++Y    +QFL +      + I+     + +    R ++   +T+K    S+   L+ 
Sbjct: 33  TLKTYSAALKQFLTWCKI---KAISPMCATEGTICSYRQYL--LKTKKYKPASVALKLTV 87

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKK---SNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           ++ F     K+     +   +++   +     +    L+  +A  L++       ++   
Sbjct: 88  VRRFYTMATKQGFIAANPATDVKPPTQSYDPATHNNYLDLTEAKQLIE----SLPNDDSL 143

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKA 209
              R+ A++ ++   G R  E   L   +I+       L +QGK  + RIVPL P + + 
Sbjct: 144 PSLRDRALIEIMVWQGCRTVELYRLNVGDIIKRNEDLGLNVQGKRSR-RIVPLTPDLAQL 202

Query: 210 ILEYYDLCPFDLN-LNIQLPLFRG---IRGKPLNPGVFQRYIRQLRRYLGL--------- 256
           + +Y          L    PLF      +G  L      R + +  +  G          
Sbjct: 203 LQKYLKARKKAGEILKADTPLFTSLTRNKGSRLTRRSIARIVDKYLKINGWKNNNLDEHQ 262

Query: 257 -------------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
                        P   +AH+LRH+  T  L  G  LR +Q +LGH    TT +Y +   
Sbjct: 263 VDHDDFDDLFICSPRKLSAHSLRHTCGTLALWAGVSLRQVQDLLGHRDPETTALYAHAGD 322

Query: 304 K 304
           +
Sbjct: 323 R 323


>gi|305663679|ref|YP_003859967.1| integrase family protein [Ignisphaera aggregans DSM 17230]
 gi|304378248|gb|ADM28087.1| integrase family protein [Ignisphaera aggregans DSM 17230]
          Length = 368

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/317 (19%), Positives = 123/317 (38%), Gaps = 32/317 (10%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
           G   P  +  +     + +L  LE   G  + T++SY      F  F+ +     ITI  
Sbjct: 11  GRAPPGTIDEDPRIVVERFLTVLEAS-GADEKTVKSYRAALNDFFSFIGWKPIRSITIDD 69

Query: 63  IRQLSYTEIRAFI--SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           + +     +R     +K   ++  + ++   +  ++ F ++     +  +  I  +R  +
Sbjct: 70  VYRWRAERLRKGFPNAKYNDRRSRESTMYYYMLFLRRFFRW-----LGLDIEIPGVRRPR 124

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                 + L  ++   L +            +              GLR  EALS+T  +
Sbjct: 125 --RREIQTLKPEEISRLFNASRDLMDLLILSLLL----------ETGLRAEEALSITYGD 172

Query: 181 IMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           I      +R++  K  + RIV +     + +            +    P+    R  P++
Sbjct: 173 IDLHNREIRVRNAKYGEERIVFIGDLTLQVL----------STITSIKPVAPDERVIPIS 222

Query: 240 PGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                + ++ L +  G+ P     H LRH+FAT  L  G ++  +Q ILGH  L TT+IY
Sbjct: 223 YSGLYKRLKSLAKRAGIDPQKVRPHILRHTFATEALKKGLNIAYLQKILGHRDLKTTEIY 282

Query: 299 TNVNSKNGGDWMMEIYD 315
            ++  ++  D  ++ + 
Sbjct: 283 LHLLREDVKDQYLKSFR 299


>gi|254426414|ref|ZP_05040130.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus
           sp. PCC 7335]
 gi|196187828|gb|EDX82794.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus
           sp. PCC 7335]
          Length = 339

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 56/311 (18%), Positives = 120/311 (38%), Gaps = 25/311 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +W+     +R +   T ++Y    R F ++  F        +    +   ++  +    +
Sbjct: 34  DWVDEFLGDREIRPNTKKAYTRQLRGFQVWCEF--------KHWGDVGEADVSRYKEHLK 85

Query: 80  TQ-------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            +        +   S+ ++++ ++SF K+L  ++  T +  LN+  +  + +  + +   
Sbjct: 86  NKPTKAGKIGLSPASVNQAIATLQSFFKWLATKRYITYNPTLNVEKVPAAPTETKDIEVA 145

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L +   L    + + +  R++AI  LL   GLR +E   L   +       +  + 
Sbjct: 146 AVRQLAEG--LEYRGQREQLSTRDTAIFELL-KHGLRATEVSKLNIGDYNGQAVQVS-KA 201

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGK----PLNPGVFQRYI 247
           K      VPL P+ R+A+  Y   C     + +   PLFR +        L        +
Sbjct: 202 KWRSDGTVPLAPNARQALDSYLGWCVRKGFDTSSGEPLFRSLSRNGYGKRLGYWGIYEMV 261

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT-NVNSKNG 306
           + L        +   H LRH+F T L+ N      ++ ++      T++ YT     K  
Sbjct: 262 KDLGVIAESTENVHPHRLRHTFGTQLVLNDMSPDYVRKLMRIKSPVTSERYTKRALEKKA 321

Query: 307 GDWMMEIYDQT 317
            D   E+ +++
Sbjct: 322 EDAFNELIERS 332


>gi|309810139|ref|ZP_07703985.1| phage integrase, N-terminal SAM domain protein [Lactobacillus iners
           SPIN 2503V10-D]
 gi|308169638|gb|EFO71685.1| phage integrase, N-terminal SAM domain protein [Lactobacillus iners
           SPIN 2503V10-D]
          Length = 326

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/295 (20%), Positives = 116/295 (39%), Gaps = 29/295 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS-KRR 79
           +L   +IE G S+ +L+ YE    +    +          +  R ++  +IR ++S  + 
Sbjct: 55  FLAAKKIE-GRSEKSLKYYESTILKMTEKVG---------KDARYITTEDIREYLSNYQL 104

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
             K    ++      + SF  +L+      +S +  +  +K   S+    ++++   + D
Sbjct: 105 NHKSSKVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVKTGQSIKETYSDEELEIMRD 164

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           +              R+ AI+ +L   G+R+ E + L   ++  ++    + GKGDK RI
Sbjct: 165 SC----------TKIRDLAIIDMLASTGMRVGEMVLLNRDDVNFEERECMVFGKGDKERI 214

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLF--RGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           V      +  + +Y      D   +    LF       + L     +  +R+L   LG+ 
Sbjct: 215 VYFDARTKLHLEKYL-----DSRTDNNSALFTSLSAPHERLGIAGIEARLRKLGGELGIY 269

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V   N       
Sbjct: 270 K-VHPHKFRRTLATKAIDKGMPIEQLQKLLGHQRIDTTLQYAMVKQSNVKMAHRR 323


>gi|303247551|ref|ZP_07333822.1| integrase family protein [Desulfovibrio fructosovorans JJ]
 gi|302491031|gb|EFL50925.1| integrase family protein [Desulfovibrio fructosovorans JJ]
          Length = 413

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 120/296 (40%), Gaps = 30/296 (10%)

Query: 24  NLEIER-GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
            LE  R      T+Q+ +   R++L  +       I    ++ +S   +           
Sbjct: 112 YLEHARQNKKPNTVQTEQGLFRKWLGPV-------IGDVPLKDISPFHLERIRKNIAAAG 164

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
           +  RS   +L  ++    + +   +T   S    ++  K  N   R L  ++A  L+++V
Sbjct: 165 LSARSAHYALCVVRQVFNFARDHDMTDCVSPTCKVKAPKTDNRRLRFLTHEEADKLLEHV 224

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV 200
              +            AI  +   CGLR  E  +LT  ++  D+ TL ++  K  + RI 
Sbjct: 225 AKRS--------HELHAISLVSLHCGLRAGEIFNLTWSDVDFDRETLTLRDTKNGRTRIA 276

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN--PGVFQRYIRQLRRYLGLPL 258
            +   VR  +          +      P+F G  G   +     F+R ++ L    G+  
Sbjct: 277 YMTGQVRGMLAA-------RVKGGPGDPVFPGRGGVRRSYVSNAFERAVKDLGFNEGITD 329

Query: 259 ---STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
                  H+LRH+FA+ L+  G DL S++ ++GH  LS T+ Y++++  +    + 
Sbjct: 330 SRQKVVFHSLRHTFASWLVEQGTDLYSVKELMGHRTLSMTERYSHLSPDSLRRAVK 385


>gi|255021753|ref|ZP_05293790.1| Site-specific recombinase XerD [Acidithiobacillus caldus ATCC
           51756]
 gi|254968809|gb|EET26334.1| Site-specific recombinase XerD [Acidithiobacillus caldus ATCC
           51756]
          Length = 307

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 64/314 (20%), Positives = 123/314 (39%), Gaps = 36/314 (11%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           + + LP   + + + E   +  +       ++ T + Y    R FL + A  +       
Sbjct: 6   KSSALP--FNPDAMLEFVEYPDH-------AENTQKQYITVARTFLHWCANRSLHP---- 52

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI-------- 113
               ++   ++ F+  R    +   S    +  + +    L+ R +  ++          
Sbjct: 53  --DHVTAAHLQRFLDDR---GLSRSSQLAYMQALSALYGILQDRGLADDNPTSSWSVQYR 107

Query: 114 --LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
                   + +  LP  L+ ++    +  + L       +   R    L+LL   GLR+S
Sbjct: 108 KKKGKSGPRMAKRLPTVLDSEEETRFLATIPL--DDLLPFSVYRKRVFLHLLLFTGLRVS 165

Query: 172 EALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
           EALSL+   +    D   +R+ GKG+K R VP+ P+++  +  Y +       +     L
Sbjct: 166 EALSLSLAQVRLEADPPVVRVIGKGNKEREVPISPTLQVVLEGYLERRQR--FVRNGDWL 223

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILG 288
           F    G P         + ++ R  G+       H LRH+FAT  L  G     +++ LG
Sbjct: 224 FSTAVGAPFTRTWAYTTVSEVIRGAGIQKPAYGPHVLRHTFATRQLRAGIAPAIVKAWLG 283

Query: 289 HFRLSTT-QIYTNV 301
           H  L+ T ++Y +V
Sbjct: 284 HEDLAITFRVYEHV 297


>gi|313637890|gb|EFS03211.1| tyrosine recombinase XerC [Listeria seeligeri FSL S4-171]
          Length = 291

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 70/313 (22%), Positives = 126/313 (40%), Gaps = 28/313 (8%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E+    + ++  L   + LS  T++       +  + L  + +E+ +I   +   Y  I 
Sbjct: 3   EVNTYIEKYIDFLSY-KNLSSNTIK-------KSNVVLTNFFKERNSISITKNEQYEYIE 54

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNE 131
             +       +   +    +  +  F  Y       +  +   N+   +        L  
Sbjct: 55  MLL-----NTVKKSTAYDYIRILNKFYDYIHTFVDSSIANLFENVSFKRTPAQNISVLYS 109

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           ++ L L + +          + A    I   L+  G+R+SE  S+    I  +  T+ I 
Sbjct: 110 EEILELYERI-----KNDNRVTAYQEFIFDFLFSTGIRVSELSSIKINLIDLENRTILIT 164

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCP--FDLNLNIQLPLFRGIRG-KPLNPGVFQRYIR 248
           GKG+K RI+     +   ++ +  L     + N      LF  +   KP+        I 
Sbjct: 165 GKGNKERIIFYNDKLEHKLIRFLKLRHQIMEFNKKYHSYLFIKLTTGKPVTNNFIYYEIV 224

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           ++ +   +  +   HTLRHSFAT+LL NG D+R IQ  LGH  + TTQ YT++  KN  +
Sbjct: 225 KIGKLYDI--NLHPHTLRHSFATNLLENGCDIRYIQEFLGHSSILTTQRYTHLQLKNKTN 282

Query: 309 WMMEIYDQTHPSI 321
            +M    + HP  
Sbjct: 283 TIM----KHHPRA 291


>gi|268315977|ref|YP_003289696.1| integrase family protein [Rhodothermus marinus DSM 4252]
 gi|262333511|gb|ACY47308.1| integrase family protein [Rhodothermus marinus DSM 4252]
          Length = 320

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 124/297 (41%), Gaps = 27/297 (9%)

Query: 15  LKERQNWLQNLEIE--RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           L E Q  L++ + E  +  S  T+ +Y     +F  + A    +        +    +++
Sbjct: 19  LNELQRRLRDFQQEYLKNKSPETVGTYRRALHEFERWFATQRGQF-------RFRVADVQ 71

Query: 73  AFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALN 130
            +     R +K+   S+   L+ ++ F +YL    +  E+    ++  ++ +S  R  L 
Sbjct: 72  RYKQYLMREKKLHQVSVSTYLTALRRFCQYLVDIGLLPENPARTVKGNRRPSSHSRSVLT 131

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTL 188
             +   L    L     +T  I  R+ AI++++   GL   E +    +++        L
Sbjct: 132 RVEIEQL----LAVLDQDTSQIGLRDRAIVHMMLFAGLSEVEIVRADVRDLDQTLLGWYL 187

Query: 189 RIQGKGD--KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG----KPLNPGV 242
           R+QGKG   K + VPL P V +A+  Y +     + L+   PLF         + LN   
Sbjct: 188 RVQGKGHTAKDQQVPLDPPVVEALQAYLNTR---VPLHPGEPLFVSHGHRSEGQRLNTRS 244

Query: 243 FQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            +  I+Q     G+     T H+L H+ A   L+ G  +  +Q  + H  L TT IY
Sbjct: 245 VRSRIKQHLEAAGITRRGVTPHSLTHTAALIWLNQGMSIEEVQRRMRHGTLETTMIY 301


>gi|168699006|ref|ZP_02731283.1| Integron integrase [Gemmata obscuriglobus UQM 2246]
          Length = 322

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 64/317 (20%), Positives = 121/317 (38%), Gaps = 61/317 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           R  S  T  +Y     +F+ F          I+   ++   E+ AF++    T+ +   +
Sbjct: 20  RHYSIRTEDAYHDWAERFIRFH--------GIKHPDRMGEPEVNAFLTDLAVTRNVAAST 71

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++L  +      + +R +      L +    +   LP  ++  +   ++         
Sbjct: 72  QNQALCALLFLYAVVLERPLNE----LMVVRAHRRVRLPVVMSRDEVRAVLAE------- 120

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
               ++  +  +  + YG GLR+ E L L  +++  D + L ++G         +LP V 
Sbjct: 121 ----LEGVHRLVALIQYGSGLRLLECLRLRVKDVEWDLNQLVVRGGKGDKDRRTMLPQVC 176

Query: 208 KAILEYY-------------------------------------DLCPFDLNLNIQLPLF 230
           + +LE++                                         F  +     P  
Sbjct: 177 RGLLEWHLADVRKLHQEDLANGLGAVYVPKAFAAKNPAAPTAWAWQYVFPAHRLSVDPRS 236

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
              R   L+     R +    R  G+    T+H+ RHSFATHL+ +G D+R++Q +LGH 
Sbjct: 237 GAARRHHLHESGMNRVLADAVRDAGVDKRVTSHSFRHSFATHLIESGTDIRTVQELLGHE 296

Query: 291 RLSTTQIYTNVNSKNGG 307
            + TT IYT+V +K G 
Sbjct: 297 SVETTMIYTHVLNKGGR 313


>gi|134044785|ref|YP_001102264.1| integrase/recombinase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|134047110|ref|YP_001102052.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|165938094|ref|ZP_02226654.1| integrase [Yersinia pestis biovar Orientalis str. IP275]
 gi|229516079|ref|ZP_04405529.1| integrase [Vibrio cholerae RC9]
 gi|237640345|ref|YP_002891200.1| site-specific recombinase, phage integrase family protein
           [Escherichia coli]
 gi|237810080|ref|YP_002894520.1| site-specific recombinase, phage integrase family protein
           [Escherichia coli]
 gi|237810260|ref|YP_002894699.1| site-specific recombinase, phage integrase family protein
           [Salmonella enterica]
 gi|300836964|ref|YP_003754018.1| integrase/recombinase [Klebsiella pneumoniae]
 gi|300927180|ref|ZP_07142917.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|133905029|gb|ABO41044.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|133905319|gb|ABO42081.1| integrase/recombinase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165914117|gb|EDR32734.1| integrase [Yersinia pestis biovar Orientalis str. IP275]
 gi|229346859|gb|EEO11827.1| integrase [Vibrio cholerae RC9]
 gi|229561564|gb|ACQ77767.1| site-specific recombinase, phage integrase family protein
           [Escherichia coli]
 gi|229561744|gb|ACQ77946.1| site-specific recombinase, phage integrase family protein
           [Salmonella enterica]
 gi|229561936|gb|ACQ78137.1| site-specific recombinase, phage integrase family protein
           [Escherichia coli]
 gi|299474768|gb|ADJ18592.1| integrase/recombinase [Klebsiella pneumoniae]
 gi|300416847|gb|EFK00158.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|324008197|gb|EGB77416.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 57-2]
 gi|327536617|gb|AEA95450.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Dublin]
          Length = 336

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/307 (20%), Positives = 127/307 (41%), Gaps = 31/307 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L +L  +R  S+ T+ S+     + + F      + +       +    I A +    
Sbjct: 46  AYLVSLGSKR--SRQTMSSFLNIVAKMIGF------QNLRDCAWSSMRRHHILAVLEMLG 97

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPR--ALNEKQAL 135
                  ++   LS +K         K     +  +++ ++  + + LP+  AL   +  
Sbjct: 98  DAGKAPATINTYLSALKGVALEAWTMKQIDTDSFQHIKQVRSVRGSRLPKGRALERHEIR 157

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +L          ++     R++AIL +L GCGLR SE ++L   +++     L++ GKG+
Sbjct: 158 SLFFTC----ESDSSAKGLRDAAILGVLLGCGLRRSEIVALDMGSMIYKDRALKVLGKGN 213

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK------PLNPGVFQRYIRQ 249
           K R+  +     K + ++      ++    + PLF  IR         ++       +  
Sbjct: 214 KERMAYVPGGAWKRLDKW----VEEVRGTHEGPLFPRIRRFDDVTGERMSDQAIYHILET 269

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            R   GL +    H LR +FA+ +L NG D+ +++  +GH  ++TTQ Y     + G + 
Sbjct: 270 RRVEAGLEM-FAPHDLRRTFASSMLDNGEDIVTVKDAMGHSSIATTQKY----DRRGDER 324

Query: 310 MMEIYDQ 316
           +     +
Sbjct: 325 LKRASQR 331


>gi|309796487|ref|ZP_07690895.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
 gi|308119992|gb|EFO57254.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
          Length = 338

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/307 (20%), Positives = 127/307 (41%), Gaps = 31/307 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L +L  +R  S+ T+ S+     + + F      + +       +    I A +    
Sbjct: 48  AYLVSLGSKR--SRQTMSSFLNIVAKMIGF------QNLRDCAWSSMRRHHILAVLEMLG 99

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPR--ALNEKQAL 135
                  ++   LS +K         K     +  +++ ++  + + LP+  AL   +  
Sbjct: 100 DAGKAPATINTYLSALKGVALEAWTMKQIDTDSFQHIKQVRSVRGSRLPKGRALERHEIR 159

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +L          ++     R++AIL +L GCGLR SE ++L   +++     L++ GKG+
Sbjct: 160 SLFFTC----ESDSSAKGLRDAAILGVLLGCGLRRSEIVALDMGSMIYKDRALKVLGKGN 215

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK------PLNPGVFQRYIRQ 249
           K R+  +     K + ++      ++    + PLF  IR         ++       +  
Sbjct: 216 KERMAYVPGGAWKRLDKW----VEEVRGTHEGPLFPRIRRFDDVTGERMSDQAIYHILET 271

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            R   GL +    H LR +FA+ +L NG D+ +++  +GH  ++TTQ Y     + G + 
Sbjct: 272 RRVEAGLEM-FAPHDLRRTFASSMLDNGEDIVTVKDAMGHSSIATTQKY----DRRGDER 326

Query: 310 MMEIYDQ 316
           +     +
Sbjct: 327 LKRASQR 333


>gi|126660459|ref|ZP_01731568.1| Tn554, transposase A [Cyanothece sp. CCY0110]
 gi|126618272|gb|EAZ89032.1| Tn554, transposase A [Cyanothece sp. CCY0110]
          Length = 368

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 65/353 (18%), Positives = 127/353 (35%), Gaps = 75/353 (21%)

Query: 15  LKERQNWLQNL-EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++  Q +L  L  +ER  S  T+ +Y  + + +  FL             ++++   +  
Sbjct: 26  IEPIQKYLHYLDSLER--SPNTISAYAHNLKLYWEFLQDKH------LNWKEITLETLSE 77

Query: 74  FISKRRT------------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI-------- 113
           FI   R              K  ++++   L+ +  F ++ ++       +         
Sbjct: 78  FIHWLRNPNKNVISVQPQVSKRSEKTINHCLTTVCGFYEFYERLGEFEGIDADRYQVQPG 137

Query: 114 -----------------LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
                              +  +K+  + P  L  +Q  TLV+             + R+
Sbjct: 138 RKYKSFLHHISKGKEVKTRLLKVKEPKTFPGCLTPEQVNTLVEAC----------CNLRD 187

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQS-----------TLRIQGKGDKIRIVPLLPS 205
             ++ LLY  GLRI E L L  ++++   +              ++ K    R V +   
Sbjct: 188 KFLIRLLYESGLRIGEGLGLRHEDMVTGNNNQIKVIPRVHNINYVRAKAGVERTVHVNKE 247

Query: 206 VRKA-----ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           + +      I EY +    D    +     +G  G PLN        R+L +   +    
Sbjct: 248 LMQWYSAYLIDEYPEDIDCDFVFIVIKAPGKGKIGNPLNYKTVDSLFRRLSKKTRIE--V 305

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMME 312
           T H LRH+ AT L+  G D+  +Q  LGH  + TT   Y +++ ++      +
Sbjct: 306 TPHLLRHTHATELIRAGWDMSYVQKRLGHADIQTTVNTYIHLSDEDLSKTYQK 358


>gi|170726991|ref|YP_001761017.1| integron integrase [Shewanella woodyi ATCC 51908]
 gi|169812338|gb|ACA86922.1| integron integrase [Shewanella woodyi ATCC 51908]
          Length = 319

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 72/322 (22%), Positives = 123/322 (38%), Gaps = 64/322 (19%)

Query: 21  WLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +++ +  E   R  S  T +SY    R F+        +         ++   I  F+  
Sbjct: 6   YIEAIRAEIRVRHYSYQTEKSYLYWNRYFIRHCNIRHGD--------DITPALIEHFLCF 57

Query: 78  RRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              Q K+   + K++L  I    +++ K +       L     K    +P+ L+  +A  
Sbjct: 58  LAVQCKVSASTQKQALCAIIFACRHVLKIETKE----LQFPYAKTPQRIPQVLSSDEAKL 113

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195
           ++            ++   +  I  +L+G GLR+ EAL L  ++I     ++ + QGKG 
Sbjct: 114 II-----------SFLSNYHHLIGSILFGAGLRLKEALRLRIKDIDLSTKSIFVYQGKGQ 162

Query: 196 KIRIVPLLPSVRKAI------------------------------------LEYYDLCPF 219
           K R+  L   +   +                                     +++    F
Sbjct: 163 KDRVCMLPNGLVDELTLQMSHVKKIHDRDLVEGFGLASLPISLIKKYRSSAAKFHWQYIF 222

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
             +     P         ++P  F R +R+           TAHT RHSFAT LL  G D
Sbjct: 223 PASRRCIHPSDEYTCRHHIHPTAFSRELRKATTKSNTNKRVTAHTFRHSFATSLLLKGHD 282

Query: 280 LRSIQSILGHFRLSTTQIYTNV 301
           +R+IQ +LGH  + TTQIYT+V
Sbjct: 283 IRTIQELLGHSDVKTTQIYTHV 304


>gi|166031050|ref|ZP_02233879.1| hypothetical protein DORFOR_00731 [Dorea formicigenerans ATCC
           27755]
 gi|166029317|gb|EDR48074.1| hypothetical protein DORFOR_00731 [Dorea formicigenerans ATCC
           27755]
          Length = 329

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/299 (18%), Positives = 122/299 (40%), Gaps = 29/299 (9%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI- 75
           + +++L +  +E G S  T+  Y  +  + L ++          + +  ++  +I +++ 
Sbjct: 53  DLEDYLMSKALE-GKSVDTVNRYRYELTRLLSYIN---------KAVADITDGDISSYLR 102

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           + +  + + + +LK   +   SF  +L+ R     + ++ + ++K    + R   + +  
Sbjct: 103 AYKNIRAVKNSTLKGVRAVYSSFFVWLRDRDRVRRNPMVLVESIKVEKRIKRPFTDAERE 162

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+ +              R+ A++  LY   +R+SE  SL   +I      L + GKG 
Sbjct: 163 QLLRSCAT----------IRDKAMMEFLYSTAVRVSELASLNRDDIRWSSKDLIVYGKGG 212

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRY 253
           K R V L       + EY          +    LF G++     L+    +  IR+    
Sbjct: 213 KERTVYLNERTNMYLQEYLQSR-----TDNNPALFVGLKSPHNRLSKAGIEDMIRRTGER 267

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+      H  R +  T+ ++ G  L+    + GH +  TT +Y +V+ ++      +
Sbjct: 268 AGVEK-AHPHRFRGTSITNAINRGMPLQEASIMAGHAKTETTMLYCSVDQESVKYHHKK 325


>gi|284991910|ref|YP_003410464.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284065155|gb|ADB76093.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 309

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/306 (17%), Positives = 115/306 (37%), Gaps = 13/306 (4%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
            +  E    R+++   L  E   S  T++ Y     +   +      E     +   ++ 
Sbjct: 10  AMGQEWTALRRDFATTLRAE-NKSPNTVRLYTGAVDKLSAWC----IETGGPASPLAVTR 64

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++  F++  +T+     +       ++ F  ++ + +   +S +  MR           
Sbjct: 65  GDLTRFMADMQTE-WKPGTCSLVYRALQQFFGWMVREEEIEKSPMEGMRPPHTPEVPVPV 123

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L + Q   L     L T +   + D R+ A++ L    G R +E   L   ++     T+
Sbjct: 124 LTDLQLREL-----LATCNGRSFTDRRDHAMIRLFVDTGCRRAEIAELAVDSVDLANQTI 178

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           ++ GKG +IR+VP      +A+  Y  +   D   +            PL+PG   + + 
Sbjct: 179 QVLGKGRRIRVVPFGSRTAQALGRYLRMRDKDPWAHTGHLWLSEKGRGPLSPGGIVQMLE 238

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN-SKNGG 307
           +  R +G+  +  AH  RH+ A    +NGG    +  ++G   +   + Y      +   
Sbjct: 239 RRGRSVGIT-NLHAHQFRHTAAHRWGANGGSETDLMRLMGWRSVQMLRRYAASTADERAR 297

Query: 308 DWMMEI 313
           D    +
Sbjct: 298 DAHRRM 303


>gi|254425489|ref|ZP_05039206.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus
           sp. PCC 7335]
 gi|196187912|gb|EDX82877.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus
           sp. PCC 7335]
          Length = 339

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 56/311 (18%), Positives = 122/311 (39%), Gaps = 25/311 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +W+     +R +   T ++Y    R F ++  F        +    +S  ++  +    +
Sbjct: 34  DWVDEFLGDREIRPNTKKAYTRQLRGFQVWCEF--------KHWGDVSEADVSRYKVHLK 85

Query: 80  TQ-------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            +        +   S+ ++++ ++SF K+L  ++  T +  LN+  +  + +  + +   
Sbjct: 86  NKPTKAGKIGLSPASVNQAIATLQSFFKWLATKRYITYNPTLNVEKVPAAPTETKDIEVA 145

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L +   L    + + +  R++AI  LL   GLR +E   L   +       +  + 
Sbjct: 146 AVRQLAEG--LEYRGQREQLSTRDTAIFELL-KHGLRATEVSKLNIGDYNGQAVQVS-EA 201

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGK----PLNPGVFQRYI 247
           K      VPL P+ R+A+  Y   C     + +   PLFR +        L        +
Sbjct: 202 KWRSDGTVPLAPNARQALDSYLGWCVRKGFDTSSGEPLFRSLSRNGYGKRLGYWGIYEMV 261

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT-NVNSKNG 306
           + L   +    +   H LRH+F T L+ N      ++ ++      T++ YT     K  
Sbjct: 262 KDLGAIVETTENVHPHRLRHTFGTQLVLNDMSPDYVRKLMRIKSPVTSERYTKRALEKKA 321

Query: 307 GDWMMEIYDQT 317
            D   ++ +++
Sbjct: 322 EDAFNDLIERS 332


>gi|157164045|ref|YP_001467592.1| transport protein [Campylobacter concisus 13826]
 gi|112801157|gb|EAT98501.1| site-specific recombinase, phage integrase family [Campylobacter
           concisus 13826]
          Length = 353

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 72/283 (25%), Positives = 125/283 (44%), Gaps = 24/283 (8%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y    ++    + FY      + +++Q+    +   ++   T  + D S K     +
Sbjct: 73  INTYFNPLKKIYETMKFYE-----LSSLKQIDEELLSEILAS-TTGGLSDASKKNYRISV 126

Query: 96  KSFLKYLKKRKITTESNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTSH 147
            +F  +L K+        +   NLK        K   LP  + E++    +D +      
Sbjct: 127 INFFAFLDKQNEEDGKAHVFDINLKNWGGVSGNKGQKLPEFMGEEEVKKFLDAIE---ES 183

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPS 205
           + K    RN  I+ ++   G+R+SEAL+L  ++I    D   +RI+GKG+K RIV +   
Sbjct: 184 DFKQNSNRNKLIIKVIIFTGIRVSEALNLKRKDITEDGDLFIIRIRGKGNKYRIVMIKRH 243

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHT 264
           + +A L    +      +N +  LF   +G  L      R + Q+    G+      AH 
Sbjct: 244 LIEAHLNAIAINY----INKEGYLFINKKGTRLTQAYVSRIVEQILFKAGIRKEKNGAHM 299

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           LRH+FAT L     DL  +Q  LGH  L+T++IYT+ +S    
Sbjct: 300 LRHTFATMLYKKQKDLVLVQEALGHASLNTSRIYTHFDSDKLK 342


>gi|157165114|ref|YP_001466903.1| hydrogenase expression/formation protein [Campylobacter concisus
           13826]
 gi|112800281|gb|EAT97625.1| site-specific recombinase, phage integrase family [Campylobacter
           concisus 13826]
          Length = 354

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 72/283 (25%), Positives = 125/283 (44%), Gaps = 24/283 (8%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y    ++    + FY      + +++Q+    +   ++   T  + D S K     +
Sbjct: 73  INTYFNPLKKIYETMKFYE-----LSSLKQIDEELLSEILAS-TTGGLSDASKKNYRISV 126

Query: 96  KSFLKYLKKRKITTESNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTSH 147
            +F  +L K+        +   NLK        K   LP  + E++    +D +      
Sbjct: 127 INFFAFLDKQNEEDGKAHVFDINLKNWGGVSGNKGQKLPEFMGEEEVKKFLDAIE---ES 183

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPS 205
           + K    RN  I+ ++   G+R+SEAL+L  ++I    D   +RI+GKG+K RIV +   
Sbjct: 184 DFKQNSNRNKLIIKVIIFTGIRVSEALNLKRKDITEDGDLFIIRIRGKGNKYRIVMIKRH 243

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHT 264
           + +A L    +      +N +  LF   +G  L      R + Q+    G+      AH 
Sbjct: 244 LIEAHLNAIAINY----INKEGYLFINKKGTRLTQAYVSRIVEQILFKAGIRKEKNGAHM 299

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           LRH+FAT L     DL  +Q  LGH  L+T++IYT+ +S    
Sbjct: 300 LRHTFATMLYKKQKDLVLVQEALGHASLNTSRIYTHFDSDKLK 342


>gi|94972399|ref|YP_595617.1| integrase/recombinase [Lawsonia intracellularis PHE/MN1-00]
 gi|94731936|emb|CAJ53953.1| similar to integrase/recombinase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 361

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 61/278 (21%), Positives = 113/278 (40%), Gaps = 26/278 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  T++ Y       + ++          +    ++  ++ AFI  R+       ++   
Sbjct: 83  SFATMELYARYITDLINYVQ---------KDFHHITSQDVDAFIRYRQLNGSKPATINTI 133

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLK------KSNSLPRALNEKQALTLVDNVLLHT 145
           +  +KSF ++L    I T +    ++  +          L  +L+E +   L D ++   
Sbjct: 134 IGALKSFFRHLVDAGILTLNPTAFLKKRRNDTKQNLPGHLSHSLSESELQRLFDGMIEQG 193

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLL 203
           +        R+ A++ +L+  G+R  EA+ L   +I+    +  L + GKG K R V L 
Sbjct: 194 A------SLRDQALMQVLFLTGIRAEEAVRLKWSHIVTWQSRWYLDVFGKGSKRRRVYLP 247

Query: 204 PSVRKAILEYYDLCPFDLNL-NIQLPLFRGIRGK--PLNPGVFQRYIRQLRRYLGLPLST 260
                 I EY  L   +L L +   PLF  +R     ++       +++  + L      
Sbjct: 248 IQALTVIQEYGKLLGIELGLASNSKPLFAHLRRPNEHISRHGLYVLVKKWCKRLLGRTDV 307

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           + H  RHS  T L   G  L SI+++ GH  + TT  Y
Sbjct: 308 SPHWFRHSCFTQLAHKGASLESIKALAGHESVETTMQY 345


>gi|121997131|ref|YP_001001918.1| phage integrase family protein [Halorhodospira halophila SL1]
 gi|121588536|gb|ABM61116.1| phage integrase family protein [Halorhodospira halophila SL1]
          Length = 379

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/270 (17%), Positives = 105/270 (38%), Gaps = 17/270 (6%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           +SY+   +   I L  +    +  + +  ++  ++ A ++  +++     ++ R L+ I 
Sbjct: 111 KSYKRSWKTDEIMLNHHALPTLGTKKMSDINRNQVEAIMNDMKSRGYAPSTVDRVLTLIS 170

Query: 97  SFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
              K     +I     +    ++     N +   L  ++   +++          +    
Sbjct: 171 YMFKVAMDNEIPGVVSNPTEKIKRPVIDNKIENYLTREEVNRMLEA-------ARRRNHP 223

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
              +I+ +    G R +E LS   ++   D     I    +  R V L     + + E  
Sbjct: 224 HIYSIIRMAVLTGARKAEILSARFEDFDLDNKIWNIPKGKNGSRKVILAEKAVQMVKELP 283

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                DL       LF             Q+  + + R  G+  S   H LRHS+A+ L+
Sbjct: 284 KQEGTDL-------LFPQPGTDK-PYQCIQKPFKAVLRDSGIDESVRFHDLRHSYASLLV 335

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             G ++  ++ +LGH +++TT  Y +++++
Sbjct: 336 QGGVNIYEVKELLGHSQITTTMRYAHLSAQ 365


>gi|118602010|ref|YP_908710.1| integrase [Photobacterium damselae subsp. piscicida]
 gi|118614748|ref|YP_908531.1| integrase [Photobacterium damselae subsp. piscicida]
 gi|118596839|dbj|BAF38143.1| integrase [Photobacterium damselae subsp. piscicida]
 gi|118597019|dbj|BAF38322.1| integrase [Photobacterium damselae subsp. piscicida]
          Length = 307

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 62/307 (20%), Positives = 127/307 (41%), Gaps = 31/307 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L +L  +R  S+ T+ S+     + + F      + +       +    I A +    
Sbjct: 17  AYLVSLGSKR--SRQTMSSFLNIVAKMIGF------QNLRDCAWSSMRRHHILAVLEMLG 68

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPR--ALNEKQAL 135
                  ++   LS +K         K     +  +++ ++  + + LP+  AL   +  
Sbjct: 69  DAGKAPATINTYLSALKGVALEAWTMKQIDTDSFQHIKQVRSVRGSRLPKGRALERHEIR 128

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +L          ++     R++AIL +L GCGLR SE ++L   +++     L++ GKG+
Sbjct: 129 SLFFTC----ESDSSAKGLRDAAILGVLLGCGLRRSEIVALDMGSMIYKDRALKVLGKGN 184

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK------PLNPGVFQRYIRQ 249
           K R+  +     K + ++      ++    + PLF  IR         ++       +  
Sbjct: 185 KERMAYVPGGAWKRLDKW----VEEVRGTHEGPLFPRIRRFDDVTGERMSDQAIYHILET 240

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            R   GL +    H LR +FA+ +L NG D+ +++  +GH  ++TTQ Y     + G + 
Sbjct: 241 RRVEAGLEM-FAPHDLRRTFASSMLDNGEDIVTVKDAMGHSSIATTQKY----DRRGDER 295

Query: 310 MMEIYDQ 316
           +     +
Sbjct: 296 LKRASQR 302


>gi|300723172|ref|YP_003712470.1| integrase/recombinase [Xenorhabdus nematophila ATCC 19061]
 gi|297629687|emb|CBJ90293.1| Integrase/recombinase [Xenorhabdus nematophila ATCC 19061]
          Length = 338

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 63/285 (22%), Positives = 117/285 (41%), Gaps = 20/285 (7%)

Query: 40  ECDTRQFLIFLAFYTE-EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSF 98
               + FL  +A     + +   T   +    I+A +           ++   LS +K  
Sbjct: 61  RQTMKSFLNIVAKMLGYQNVRDCTWGAMRRHHIQAIMEMLSDAGKAPATINTYLSALKGV 120

Query: 99  LKYLKKRKITTESNILNMRNLK--KSNSLPR--ALNEKQALTLVDNVLLHTSHETKWIDA 154
                  K     N  +++ ++  + N LP+  AL   +  TL         ++      
Sbjct: 121 ALEAWTMKQLDTDNFQHIKQIRSVRGNRLPKGRALERYEIKTLFFTC----ENDVSTKGL 176

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R++AI+ +L GCGLR SE +SL  ++I+  +  LR+ GKG+K R+  +       +  + 
Sbjct: 177 RDAAIIGVLLGCGLRRSEIVSLDMKHIIRREQALRVMGKGNKERLSYMPEGTWDRLTRWV 236

Query: 215 DLCPFDLNLNIQLPLFRGIRGK------PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           D    ++  +   PLF  IR         L+       +   R   G+      H LR +
Sbjct: 237 D----EVRGDHAGPLFTRIRRHDDVTDNRLSDQAIYHILETRRIESGVEK-FAPHDLRRT 291

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           FA+ +L NG D+ +++  +GH  ++TTQ Y     +   +    +
Sbjct: 292 FASAMLDNGEDIVTVKDAMGHSSITTTQKYDRRGDERLRNAARNL 336


>gi|296241818|ref|YP_003649305.1| integrase family protein [Thermosphaera aggregans DSM 11486]
 gi|296094402|gb|ADG90353.1| integrase family protein [Thermosphaera aggregans DSM 11486]
          Length = 339

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 71/323 (21%), Positives = 127/323 (39%), Gaps = 52/323 (16%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
            + E+ + E+L+E       L    G SK T+++Y+     FL F        I  + ++
Sbjct: 13  EILELSNQEILQEF----IMLLESTGASKDTVKAYQSAISDFLDF--------IGDKPLK 60

Query: 65  QLSYTEIRAFISKRRTQKIGDR----------SLKRSLSGIKSFLKYLKKRKITTESNIL 114
           +++  ++ A+ ++R       +          +L      +K F ++L  +        L
Sbjct: 61  EVTLRDVLAWRNERLKSGFPRKKTLDKSRWQATLHYYTLFLKRFFEWLGLQ--------L 112

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            + ++KK +S    L +++   L              +              GLR  E L
Sbjct: 113 RVPSVKKPSSRITVLTDEEVGKLFQAARNPLDKLILRLLL----------DTGLRSKEVL 162

Query: 175 SLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
           ++   +I  D  T+R+ +GK  K R V       K I  +  L            L R  
Sbjct: 163 NIKVGDIDFDGRTIRVVEGKYGKERYVTASNETFKLIEAWVKLNN----------LGRDD 212

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           R   L  G   + +++L    G+P      H LRH+FAT  L  G  L S+Q +LGH  +
Sbjct: 213 RLVDLTYGGLYKKLKRLAAKAGIPPEKIRPHVLRHTFATRALRLGISLPSLQRLLGHTDI 272

Query: 293 STTQIYTNVNSKNGGDWMMEIYD 315
            TTQ+Y ++   +      E ++
Sbjct: 273 RTTQVYLHLTIDDIKKEYREKFE 295


>gi|150390297|ref|YP_001320346.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
 gi|149950159|gb|ABR48687.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
          Length = 372

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 65/342 (19%), Positives = 132/342 (38%), Gaps = 40/342 (11%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-------EKITIQT 62
           +  +L    +++   L+   G++  T  +Y  D   F  +L  +TE         I I+T
Sbjct: 33  IESQLPPFMKDFFLYLKN--GVALTTRLAYSEDVLFFCKYLVSHTELTDADHTTLIKIET 90

Query: 63  IRQLSYTEIRAFISK-------RRTQKIG-----DRSLKRSLSGIKSFLKYLKKRKITTE 110
            +Q++  +I  ++          + + I      +R+L R  S +    K+L +  +  +
Sbjct: 91  FQQMTAKDINRYLGDFCSRYSIEKEESIKIMENHNRALARKKSSLAVLFKFLYRDGLIKQ 150

Query: 111 SNILNMRNLKKSNSLP---RALNEKQALTLVDNVLLHTSHETKWIDAR------NSAILY 161
           +    +  ++     P   + L   +   ++D V L  +   K           + AIL 
Sbjct: 151 NISDGLNPIRLPKPQPDAIKRLEIDEVARMIDCVDLGEAFTEKEKTYWQKTKLRDKAILM 210

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD- 220
           L    GLR+SE   L   +   ++   +I  K  K   +P+  +    I EY        
Sbjct: 211 LFLTYGLRLSELEQLNISSFNFNRGEFKIYRKRGKETAMPINRTCETVIKEYMANERPQS 270

Query: 221 --LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL---GLPLSTTAHTLRHSFATHLLS 275
             L+   +  LF  ++ K +     +  +++    +         + H LR + AT L+ 
Sbjct: 271 SALDEEHKDALFLSLQRKRMTTRAIRNMVKKYTALVLDTTAKNGYSPHKLRATAATSLIQ 330

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            G  +  +Q++L H  ++TTQ+Y      +  D   +I    
Sbjct: 331 QGFSIYDVQNLLDHDDVTTTQLYA----AHKKDVKRQIVKNF 368


>gi|323692724|ref|ZP_08106953.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
 gi|323503278|gb|EGB19111.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
          Length = 289

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 72/304 (23%), Positives = 120/304 (39%), Gaps = 44/304 (14%)

Query: 2   EGNNLP-EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           +G N P EI S   + E QN+L   + ER  S+ T+  Y  D + F  FL      K  +
Sbjct: 3   QGQNKPDEIFSCTRIAEFQNYLH--QEER--SRNTITKYIRDLKVFFTFLDGQPMAKEAL 58

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
              +            K  TQ     S+   L+ +  FL +        E   L ++ LK
Sbjct: 59  LDWK------------KHLTQTHAPASVNSMLASVNKFLDW-------LELPGLKVKPLK 99

Query: 121 KSNSL----PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
               +     + L  ++   L+       ++           +L  +   G+R+SE   +
Sbjct: 100 IQRQIFSNPKKELTTEEYRRLIKAAENRQNNRLS-------LLLQTICSTGIRVSELKFI 152

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
           T ++    ++    +GK    RI+ L P + +A+  Y      D  +     +F    G 
Sbjct: 153 TAESAKTGRAEADCKGK---TRIIFLPPDLCRALRHYCRERGIDAGI-----IFCTRNGC 204

Query: 237 PLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           PL+     + ++ L    G+ P     H LRH FA    +   DL  +  +LGH  +STT
Sbjct: 205 PLDRSNIWKDMKMLCDSAGVEPGKVFPHNLRHLFARTYYALEKDLSRLADLLGHSNVSTT 264

Query: 296 QIYT 299
           +IYT
Sbjct: 265 RIYT 268


>gi|188026429|ref|ZP_02997898.1| hypothetical protein PROSTU_04137 [Providencia stuartii ATCC 25827]
 gi|188019828|gb|EDU57868.1| hypothetical protein PROSTU_04137 [Providencia stuartii ATCC 25827]
          Length = 643

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 125/294 (42%), Gaps = 14/294 (4%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E + +   L   RG ++ T ++      +FL       +       +  L+   +R F++
Sbjct: 21  ELRRFDDYLLQARGFARSTRETSIRIVGRFL-----RDKFNDGAINLSTLTPAHVRDFLA 75

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQA 134
            +        S    +S ++ + ++   +K      I  + N    +  SLP++L+  + 
Sbjct: 76  SQANVYRTPVSFSLVVSSLRGYFRWRIMQKDDLYVLIGALANPANWQQASLPKSLSTDEI 135

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-K 193
             L++++      +T  I  R  A++      GLRI E   L+  +I     T+ ++  K
Sbjct: 136 EQLLNSL-----GQTDPIGLRADAMVRCALDLGLRIGEIARLSLDDIDWVSGTITLRRTK 190

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G +  ++PL  +   AI  Y                 +  R +P++  V    IRQ+   
Sbjct: 191 GRRDDVMPLPVTTGNAIAAYLQNGRPKTLHREVFASHKTPRERPISRSVVSIAIRQVYTR 250

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            GL   T+AH LRH+ A  LL+ G  ++ I  IL H  L+ T+IY  ++S+N  
Sbjct: 251 AGLQY-TSAHLLRHTMANRLLATGASIKDIADILRHRSLNATRIYAKLDSRNLA 303



 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 65/282 (23%), Positives = 106/282 (37%), Gaps = 28/282 (9%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR-SLSGIKSFLKY 101
            R F  ++     +         L+   +  + SK R  +    S+    L  +++F+++
Sbjct: 351 LRSFARYVQRANHQGP-------LTLELMTEWASKGRFTEAVPISMAHGRLKYLRTFMRW 403

Query: 102 LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
           L+  +   E    ++   K     P   +E++   L+        H +         +  
Sbjct: 404 LQFSEPEHEVPDGSVCGRKPERGTPHIYSEQEIEDLLAAAKRLGPHNSIR-GLLYETLFG 462

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPF- 219
           LL   GLRISEALSL   ++   +S L I+  K  K R + L PS  KA+ +Y +     
Sbjct: 463 LLASTGLRISEALSLRISDVDLRRSILIIRRTKFGKSRSIVLHPSTSKALHQYLNQRKLT 522

Query: 220 DLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLSTTAHT-----LRHSFA 270
               +     F G+R       L      +  R LRR LG     T H      LRHSF 
Sbjct: 523 RAASDEDAYFFIGLRADVLGKRLGGQQVCQVFRALRRELGWVNRGTHHAPRIHDLRHSFV 582

Query: 271 TH----LLSNGGD----LRSIQSILGHFRLSTTQIYTNVNSK 304
                     G D    + S+ + LGH  ++ T  Y     +
Sbjct: 583 VRRIILWQQQGIDVAHEMLSLSTYLGHASIAETYWYLQAVPE 624


>gi|158339285|ref|YP_001520462.1| phage integrase [Acaryochloris marina MBIC11017]
 gi|158309526|gb|ABW31143.1| phage integrase [Acaryochloris marina MBIC11017]
          Length = 335

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 121/293 (41%), Gaps = 33/293 (11%)

Query: 22  LQNLEIE-----RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           L+ + +E     R +S  T ++YE D +QF+ +         T +   +++  ++  + +
Sbjct: 36  LRWMRVEEFMRSREISSNTRKAYERDLKQFMDW---------TDKGWHEITARDLDRYKN 86

Query: 77  KR------RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
                   R Q   + ++ R+L+ ++ F K+L  R   T+   L +  LK    LP+  +
Sbjct: 87  YLKVEPNQRGQLRKNATINRNLAALQGFFKWLTVRDYITKDPTLLLEKLKSDPVLPQEFS 146

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           + +      + L     +  +   R+ A+L+L+   GLR SE   L   +    + T+R+
Sbjct: 147 QDEV-----DNLYQAICDRGFHAFRDRALLHLI-DHGLRASEIHRLNVGDYDGQRITIRV 200

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGI----RGKPLNPGVFQR 245
             K D +  VPLL   RKAI +Y        + L    PLF       +G+ L      +
Sbjct: 201 -AKADSVGTVPLLKKARKAIDQYKQWREQQGDALGNDSPLFVSHSNNSKGQRLQYWGIYK 259

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             + +     +  +   H  RH+ AT L+    D    + I  H    +   Y
Sbjct: 260 IFKAIAEIAEVE-NAHPHRGRHTLATRLVMKDMDSVLARRITRHASEQSFVRY 311


>gi|217963765|ref|YP_002349443.1| integrase/recombinase [Listeria monocytogenes HCC23]
 gi|217333035|gb|ACK38829.1| integrase/recombinase, putative [Listeria monocytogenes HCC23]
 gi|307571661|emb|CAR84840.1| integrase/recombinase, putative [Listeria monocytogenes L99]
          Length = 314

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 59/299 (19%), Positives = 123/299 (41%), Gaps = 17/299 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q ++++  I R + + T+Q Y  D    L     Y   +  I  + Q    ++  +   
Sbjct: 27  FQEFIRSRRI-RNVRETTIQYY-TDAINVLKRDREYIHVQKPIMHLSQRDLEDMIMY--- 81

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +   ++   +   K++  +L ++     +   N+  L+    +   LN  +   +
Sbjct: 82  -WKGFMRANTINSKIKAFKAYYNFLYQQGFIKINPCENLSLLRVREEIRETLNPDEIKKI 140

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            ++       +  +   R+  I  LL   G+RISEA+ +  Q+I  D   + ++ K  K 
Sbjct: 141 ANHF----KKKETFSSYRDLVIFQLLLDTGIRISEAVGINIQDIHSD-YIIVVESKNLKQ 195

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RIV +   +R+ +  Y  +     +      +F      P N   FQ+ +R+ R   G+ 
Sbjct: 196 RIVYISKRMREKLTSYLKIRGNLSHTK----VFINRDQLPYNKNTFQQNLREARVLCGIQ 251

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG--DWMMEIY 314
              + H  R ++A + + +G D  S+ ++LGH  L  T+ Y  +  K+      + + Y
Sbjct: 252 KQVSPHVCRRTYAKNAILSGMDAFSLATLLGHSSLEVTKRYVQIWGKDLKIQSKLKKDY 310


>gi|331269495|ref|YP_004395987.1| integrase/recombinase [Clostridium botulinum BKT015925]
 gi|329126045|gb|AEB75990.1| integrase/recombinase, putative [Clostridium botulinum BKT015925]
          Length = 274

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 122/291 (41%), Gaps = 39/291 (13%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
             S+ T+ SY  D  QF  +L    ++ + I+ +  +   E + F+     +++  +++ 
Sbjct: 16  RKSEKTIDSYIRDISQFNDYLKTNKKKLVKIK-LSDID--EFKNFLIY--DKELKIKTIN 70

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R L  I  +LK+         +  ++++  K            Q    +D++L +   E 
Sbjct: 71  RKLVSINQYLKFN--------NISVDIKQEKV-----------QMQNFLDDMLSNQDIED 111

Query: 150 ------KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
                    D R   I+Y LY  G+R+SE L LT       +S++ I GKG K R V + 
Sbjct: 112 IIKATYAKDDVRARTIIYTLYYTGMRVSEMLQLTI--YDTKKSSISIIGKGSKHREVFVP 169

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-STTA 262
             ++     Y  +      +     LF G RG P+N       I+      G+      A
Sbjct: 170 NKLKTIWDNYMQVR-----IKKSTALFTGKRG-PINRKTVDSIIKTYAETAGVDKSKAHA 223

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           H  RH +  +L   G D+ +I  I GH  ++TT+IYT    +   + + ++
Sbjct: 224 HNFRHLYCKNLADRGIDISTIADIAGHQNINTTRIYTRKTKEELLNIIEDM 274


>gi|313906409|ref|ZP_07839747.1| integrase family protein [Eubacterium cellulosolvens 6]
 gi|313468744|gb|EFR64108.1| integrase family protein [Eubacterium cellulosolvens 6]
          Length = 354

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 64/288 (22%), Positives = 111/288 (38%), Gaps = 25/288 (8%)

Query: 35  TLQSYECDTRQFLIFL-------AFYTEEKITIQTIRQLSYTEIRAFISKRRT------- 80
           +L +Y  D   F  +L          T + I I  + +L+  +I  F+   R+       
Sbjct: 44  SLVNYARDFYIFCEYLCANNPLLEGVTPKNIPISFMEKLTVDDIDEFLIASRSYTTPGGM 103

Query: 81  -QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK-KSNSLPRALNEKQALTLV 138
            +      LK   S +     +L       +        ++ K   +   L  ++   LV
Sbjct: 104 IKDTSPSRLKAIKSSLSVIFSWLYAHDYIPKDPTAGSMTIRVKKEKMINTLEMREVKKLV 163

Query: 139 DNVLLHT------SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + V   +      S   K    R++AI+ L    G+RISE + L  ++I  D+S + +  
Sbjct: 164 NTVENSSLSTELKSKRAKKSAYRDTAIILLFLNTGIRISELVGLNLKDIDFDESCIYVTR 223

Query: 193 KGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG K   V        A+++Y  L     +    +  LF     K +     Q  IR+  
Sbjct: 224 KGGKPDQVYFNDETAAALMDYIQLERGTYVTEECEDALFISAFHKRMAVRSVQEMIRKYS 283

Query: 252 RY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           R  L      T H  R ++ + L     DL+++Q++LGH  + TT  Y
Sbjct: 284 RETLPNKKKVTGHVFRKTYGSLLYEAS-DLKNVQAVLGHESIVTTSTY 330


>gi|253577741|ref|ZP_04855025.1| tyrosine recombinase xerC [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251842867|gb|EES70932.1| tyrosine recombinase xerC [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 321

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 61/284 (21%), Positives = 104/284 (36%), Gaps = 37/284 (13%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-------QKIG 84
           +  T ++Y      F  FL+            R +++ EI A+             + + 
Sbjct: 39  APNTRRNYFRALEHFRQFLSGMR--------FRDVTWREIEAYKIYLTKGFYRDGQKPLA 90

Query: 85  DRSLKRSLSGIKSFLKY--LKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVDNV 141
             S+   ++ +KSF K+           +   N+R    + +  R  L   +   L++ +
Sbjct: 91  PASVAAFIAPLKSFYKWGSDSSIGFFDHNPAQNVRIPAIAVTSRRHYLTRNEVGKLLEAL 150

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-----QGKGDK 196
              +         RN  I   L   GLR+SE   +  ++   D     I       K  K
Sbjct: 151 RRQS--------LRNYLIGLSLVLLGLRVSELCGIKWKDFHADMLETSIWLTVSHAKRGK 202

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R V +   +     E+          + +L LF       + P   +R I+Q     G+
Sbjct: 203 TREVKIPRELWNMYQEHARRLAKGHEPDPELKLF------AITPRQIERIIKQAGIASGI 256

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               T H LRH+ AT  L  G  L+ +Q  LGH  ++TTQ Y +
Sbjct: 257 QKQPTPHWLRHTNATLALLQGASLQQVQESLGHSHINTTQRYLH 300


>gi|317123483|ref|YP_004097595.1| integrase [Intrasporangium calvum DSM 43043]
 gi|315587571|gb|ADU46868.1| integrase family protein [Intrasporangium calvum DSM 43043]
          Length = 357

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 67/326 (20%), Positives = 118/326 (36%), Gaps = 44/326 (13%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE-------- 70
             +L+ L+        T+ +   D R F   +     E +    +  ++           
Sbjct: 28  DEYLEFLQG--RCRPNTVVAAAYDLRVFFGVVGKEPREVVPADVLGFITAQRTGRLEPGP 85

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP---- 126
           ++A ++      +   ++ R LS I  F  YL+ R     + +      ++    P    
Sbjct: 86  VQAVVADGEPAGVATSTVARRLSSISGFFGYLQARGDVVVNPVPRGLPTRRERQRPSQGV 145

Query: 127 ----------RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
                     R L   +   L   +  H          R+ A++  +   GLR  E L L
Sbjct: 146 PLTRRVWRLSRILTPAEVDALTGALRTH----------RDRAMVAAMVLGGLRRCEVLGL 195

Query: 177 TPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRG-I 233
              ++   +  L I +GKG   R+VP+       +  Y +   P     +    + RG  
Sbjct: 196 RMGDVRVAERRLFIAEGKGGHQRLVPVSSRFFTELASYLEAERPRATGTDRVFVVLRGPN 255

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI--QSILGHFR 291
           RG PL+       +   RR  GL    T H LRH+  T L   G  L ++  Q+  GH  
Sbjct: 256 RGNPLSVRGIDEVLAGARRRAGLA-HATCHELRHTCLTRLREAGMALEAVQAQAQAGHDS 314

Query: 292 LSTTQIYTNVNSKNGGDWMMEIYDQT 317
           + +T+IY ++      DW+   Y + 
Sbjct: 315 IESTRIYLHLAD----DWLASQYRKA 336


>gi|168187085|ref|ZP_02621720.1| putative integrase/recombinase [Clostridium botulinum C str.
           Eklund]
 gi|169294988|gb|EDS77121.1| putative integrase/recombinase [Clostridium botulinum C str.
           Eklund]
          Length = 274

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 65/301 (21%), Positives = 128/301 (42%), Gaps = 28/301 (9%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + K+   +   L +E+  S  T+  Y  D RQF+ +L  + ++   I  +      + + 
Sbjct: 1   MDKQFMEFQNYL-LEQRKSIATINGYMQDIRQFVEYLTNHHKQ---INKLHNQDIEDYKN 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++     +++  +++ R L  I  FL +         +  +    ++  N L   L  + 
Sbjct: 57  YL--LYDEQLKVKTVNRKLVSINQFLTFNNV------AVTIRQEKVQMQNFLSNLLTNED 108

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              +++          K  D R   I+  LY  G+R+SE L LT      +Q  + I+GK
Sbjct: 109 VQKMINTTY-------KINDVRARTIINTLYYTGMRVSEMLQLTI--YDINQPRINIKGK 159

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R V +   +     EY  +      +N    LF G RG  +N       ++++ R 
Sbjct: 160 GSKFRTVFIPHKLLNTWAEYIPVR-----INKSDKLFTGERG-AINRVTVDTILKKIARL 213

Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             +      AH  RH +  +L+ N  D+ ++  + GH  ++TT++YT ++     + + E
Sbjct: 214 SNVSLDKAHAHNFRHLYCKNLIKNDIDISTVADLCGHSSINTTRLYTRLSENELMNIINE 273

Query: 313 I 313
           +
Sbjct: 274 L 274


>gi|228911789|ref|ZP_04075557.1| Integrase [Bacillus thuringiensis IBL 200]
 gi|228847849|gb|EEM92735.1| Integrase [Bacillus thuringiensis IBL 200]
          Length = 362

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 78/336 (23%), Positives = 131/336 (38%), Gaps = 43/336 (12%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFL-----AFYTEE------KITIQTIRQLSYTE 70
           ++  E++  LS  TL +Y  +  +FL +L     A    E       + I T+  L   E
Sbjct: 25  IEYAEMKTALSPATLYAYITEFEKFLKWLISNRLAVENGEVVTNICDVPITTLENLPLNE 84

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-------RKITTESNILNMRNLKKSN 123
            R F    + + I  R++ R+ S +KS  KYL +           + + +  +   K+  
Sbjct: 85  ARTFQRYLQGEGIETRAINRTFSALKSLFKYLAQNTENEQGENYISRNVMEKIELHKEKV 144

Query: 124 SLPR--------ALNEKQALTLVDNVLLHTSHETKWIDA-----------RNSAILYLLY 164
                         NEK  +  +  +        K I             R+ AI+ L+ 
Sbjct: 145 DAAARADDVANMIFNEKDDVAFLQFLANDYGEMLKDISPKKYSYFQRDKERDIAIISLIL 204

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-L 223
           G GLR+SE  SLT  +I   Q  +R+  KG+K   V    S    + EY  + P   N  
Sbjct: 205 GTGLRVSEVASLTISSINFRQGKVRVTRKGNKRSSVLATRSCLDDVQEYIKVRPSKYNCP 264

Query: 224 NIQLPLFRGI---RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
             +  LF      +   L     Q+   +           + H LRH++AT+      DL
Sbjct: 265 QDEDLLFVTNYKGKYTQLTVRAIQKLCDKYSSA--FDEKRSPHKLRHTYATNHYKENKDL 322

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             ++  LGH  +  T IYTN+N++   + +  +  +
Sbjct: 323 VLLRDQLGHTSVEVTSIYTNINNEKKREAVDRLEKR 358


>gi|229070581|ref|ZP_04203819.1| Integrase [Bacillus cereus F65185]
 gi|228712486|gb|EEL64423.1| Integrase [Bacillus cereus F65185]
          Length = 361

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 77/336 (22%), Positives = 130/336 (38%), Gaps = 43/336 (12%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-----------KITIQTIRQLSYTE 70
           ++  E++  LS  TL +Y  +  +FL +L                  + I T+  L   E
Sbjct: 25  IEYAEMKTALSPATLYAYITEFEKFLKWLISNRLAVENGKVVTNICDVPITTLENLPLNE 84

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-------RKITTESNILNMRNLKKSN 123
            R F    + + I  R++ R+ S +KS  KYL +           + + +  +   K+  
Sbjct: 85  ARTFQRYLQGEGIETRAINRTFSALKSLFKYLAQNTENEQGENYISRNVMEKIELHKEKV 144

Query: 124 SLPR--------ALNEKQALTLVDNVLLHTSHETKWIDA-----------RNSAILYLLY 164
                         NEK  +  +  +        K I             R+ AI+ L+ 
Sbjct: 145 DAAARADDVANMIFNEKDDVAFLQFLANDYGEMLKDISPKKYSFFQRDKERDIAIISLIL 204

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-L 223
           G GLR+SE  SLT  +I   Q  +++  KG+K   V    S  + I EY  + P   N  
Sbjct: 205 GTGLRVSEVASLTISSINFRQGKVKVTRKGNKRSSVLATRSCLEDIQEYIRVRPSKYNCP 264

Query: 224 NIQLPLFRGI---RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
             +  LF      +   L     Q+   +           + H LRH++AT+      DL
Sbjct: 265 QDEDLLFVTNYKGKYTQLTVRAIQKLCDKYSSA--FDEKRSPHKLRHTYATNHYKENKDL 322

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             ++  LGH  +  T IYTN+N+K   + +  +  +
Sbjct: 323 VLLRDQLGHTSVEVTSIYTNINNKKKREAIDRLEKR 358


>gi|319653998|ref|ZP_08008091.1| hypothetical protein HMPREF1013_04710 [Bacillus sp. 2_A_57_CT2]
 gi|317394320|gb|EFV75065.1| hypothetical protein HMPREF1013_04710 [Bacillus sp. 2_A_57_CT2]
          Length = 359

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 72/348 (20%), Positives = 131/348 (37%), Gaps = 57/348 (16%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL-------AFYTEEKITIQTIRQLSYTE 70
            Q++++     R LS  TL++Y  D   F  ++        F     I +  + QL    
Sbjct: 8   VQDYIEYKS--RKLSSATLRAYVIDFIDFFTWIKEIKTFGEFQHISLIPLSVLEQLRSDM 65

Query: 71  I-RAFISKRRT-----------------QKIGDRSLKRSLSGIKSFLKY-------LKKR 105
           I R +++                       +   S+ R LS +KS   +          +
Sbjct: 66  IERKYLTYLNNAHRDRIRAMKTRKKRTVNDMKSTSINRKLSSLKSLFYWLSNIAEDENLK 125

Query: 106 KITTESNILNMRNLKKSNSLP--------RALNEKQALTLVDNVLLHTSHETKWIDA--- 154
            +   + +  +   K   ++         + L   Q    +  +     ++     A   
Sbjct: 126 PLLNRNVMAKIELDKIKTNIKTKAQALEGKILIGDQIDDFIRFIRDEYPNKINSKLAVKK 185

Query: 155 ------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
                 R+ AI+ L+   GLRI+E  +L   ++   +  + +  KG+K + VP     +K
Sbjct: 186 YNENVERDIAIVSLILSAGLRIAEVSNLDLSDLDLAEEKVYVLRKGEKEQFVPFSSIAKK 245

Query: 209 AILEYYDLCPFDLN-LNIQLPLFRGIRGKP----LNPGVFQRYIRQLRRYLGLPLSTTAH 263
            I  Y ++     N    +  LF   + +P    +     Q  I +  +  G P+  +AH
Sbjct: 246 NIQHYLEIRNVRYNSPKDEQALFLTKQQQPYGVRMTKRAMQLMIEKYAKAFGKPM-LSAH 304

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            LRHS AT       D+ S++  LGH  + TT IYT+V S +  D + 
Sbjct: 305 KLRHSMATRHYQKNKDIASLKDHLGHESIETTMIYTHVLSSDQKDKIE 352


>gi|126661412|ref|ZP_01732472.1| integrase-recombinase protein [Cyanothece sp. CCY0110]
 gi|126617296|gb|EAZ88105.1| integrase-recombinase protein [Cyanothece sp. CCY0110]
          Length = 317

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 62/284 (21%), Positives = 118/284 (41%), Gaps = 15/284 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE----IRAFISKRRT 80
           L +E   S +T + YE D R F   ++    ++  +    ++S ++    + A+ +  + 
Sbjct: 20  LWLEDKSSAMTRREYEKDLRYFFKVMSGKEVDEELVSAFLKVSQSQANAALMAYKATLKR 79

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +++   ++ R +S +KSF+    +  +   S    +++   S  L    +          
Sbjct: 80  RELAPTTINRKISAVKSFVSTANRLGLCQYS----LKDAVSSEKLKPYRDTSGIPLAEFK 135

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +L     T     R+ A+L L +   LR +E   L   + +  +  L ++GKG   +  
Sbjct: 136 KVLALCDLTTLKGKRDRALLMLFWSNALRRNEVSLLDIGDFVPSRRILWVRGKGRSEKES 195

Query: 201 -PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI----RGKPLNPGVFQRYIRQLRRYLG 255
             L P   KAI ++         +    PLF  +    RG  L+     + IR   +  G
Sbjct: 196 VDLSPKTIKAICDWLADR-GSAGIKSSSPLFISLDSRSRGSRLSGDGLYKIIRCYCKDAG 254

Query: 256 LPLSTTAHTLRHSFATHLLS-NGGDLRSIQSILGHFRLSTTQIY 298
           +    + H +RHS  T  L  + GD+R +Q +  H  L+T  IY
Sbjct: 255 IDKLMSPHRIRHSSITTALDKSDGDVRKVQKLSRHKNLNTLMIY 298


>gi|220930346|ref|YP_002507255.1| integrase family protein [Clostridium cellulolyticum H10]
 gi|220000674|gb|ACL77275.1| integrase family protein [Clostridium cellulolyticum H10]
          Length = 307

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 64/304 (21%), Positives = 119/304 (39%), Gaps = 28/304 (9%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           +I   +  K   ++L  L+   G S+ T++ Y+     F                     
Sbjct: 5   QIKKADWKKALSDFLL-LKRAEGKSERTIKDYDKHVNIFFKRYPNA-------------- 49

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
             ++ A +     + I   +     + +K F  YLK+  I T + I+ +   K  + +  
Sbjct: 50  LADLEASVLGYMGENIKPATYNLRRAYLKCFFDYLKEEDIITSNPIIKLPKRKAQDKII- 108

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
                     V   LL    ++ +    +  ++ L+  CG+R  EAL+L   +     + 
Sbjct: 109 -----DIPVDVLQQLLALPDKSSFTGLVDHCLILLMMDCGIRPKEALTLKVSDFDIKHNC 163

Query: 188 LRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           + I     K    R +PL     + I +     P D N N+  P+F     + L+  V  
Sbjct: 164 VTIPAELAKTGVSRTLPLSIETVRPITKVISSRPKDWNNNV--PVFCSCSAETLDSEVLS 221

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R  ++  + LG     T ++LRH FA + L NGG+   +Q I+GH     T+ Y  ++  
Sbjct: 222 RRFKRYSQKLG--TDITPYSLRHCFALYYLRNGGNSLMLQKIMGHTTQDMTRKYVALSDT 279

Query: 305 NGGD 308
           +  +
Sbjct: 280 DVKE 283


>gi|213691190|ref|YP_002321776.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213522651|gb|ACJ51398.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320457248|dbj|BAJ67869.1| putative phage integrase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 487

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 62/324 (19%), Positives = 119/324 (36%), Gaps = 25/324 (7%)

Query: 12  FELLKERQNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
            +  +  + WL + L   RG S  T+++       ++ +L      +             
Sbjct: 112 PDFWRVARGWLHHRLSRVRGNSPKTVEACRIGLESYIRWLETMEGVERDDIGFGHFDRAH 171

Query: 71  IRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITT---ESNILNMRNLKKSNSLP 126
           +  ++   R  +   DR++   ++ +++FL +      T     ++   +R    +    
Sbjct: 172 LGRWVEWMRAGRGYSDRTIMLRMTTMRAFLGHASLEHPTLTALANDAAGIRVRPPARKPV 231

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ- 185
             L E+    L+       +   +     N  +  L+Y    RI E  +LT +++  D+ 
Sbjct: 232 DHLGEEHTKALLTAWGTGDAKSRR-----NRMLPILMYDTAARIGELAALTLEDVRMDEP 286

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRG---KPLNPG 241
           + + I GK  K RIVP+    R+ +  Y D    D +  +   PLF   R    +PL+  
Sbjct: 287 ARITITGKRGKTRIVPMGERTRRHLTSYLDEFHPDTDGSDGARPLFHSTRNGTIRPLSVD 346

Query: 242 VFQRYIRQLRRYL-----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
                ++            +P       +R + A  L   G  L ++  +LGH  +STT 
Sbjct: 347 RIDEILKTAASKARGTCPSMPGRIHCRLIRRTRAMDLYQQGVPLPTVMQLLGHESMSTTS 406

Query: 297 -IYTNVNSKNGGDWMMEIYDQTHP 319
             Y         D M +  D   P
Sbjct: 407 AFYAFAT----LDMMRKAVDAADP 426


>gi|4958942|dbj|BAA78093.1| aminoglycoside adenyltransferase [Corynebacterium glutamicum]
          Length = 309

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 64/309 (20%), Positives = 118/309 (38%), Gaps = 64/309 (20%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLPTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFATHLLSN 276
           SFAT LL  
Sbjct: 282 SFATALLRA 290


>gi|317052534|ref|YP_004113650.1| integrase family protein [Desulfurispirillum indicum S5]
 gi|316947618|gb|ADU67094.1| integrase family protein [Desulfurispirillum indicum S5]
          Length = 303

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 73/307 (23%), Positives = 129/307 (42%), Gaps = 36/307 (11%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIER--GLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
              +P+  SF  L     + ++L+  +  GL   T+ +Y    R+   +           
Sbjct: 2   NTTMPQDPSFNKL-----YQKHLKCLKLGGLQPKTIDAYARALRRIGHYFDG-------- 48

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             +  LS  ++  + ++         ++K  L G+K F   + ++      NIL ++  K
Sbjct: 49  -NVCDLSSDQLLDYFTELLD-THSWSAVKLDLYGLKFFYSEVLRKPW---ENILLIKPPK 103

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
            S  +P  L+ +QA  L                       +  Y  GLR+ E + LT  +
Sbjct: 104 ASR-IPDILSVEQAGRLFAAT----------STLSYKVFFFTCYSMGLRLGEGIRLTVDD 152

Query: 181 IMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK--- 236
           I      + I+  KG+K R+VPL     + + E++ +      L                
Sbjct: 153 IDTGNMRVHIRDAKGNKDRLVPLPDKTLQVLREFWAVHRHPCFLFPSRKRGLKNAHLVDL 212

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           PL+ G  Q  ++ + R+LGL    + ++LRHS+ATH+L  G DL  +Q ILGH  + TT 
Sbjct: 213 PLDRGGIQSAMQSVVRHLGL-RRISCYSLRHSYATHMLEAGVDLLELQQILGHVSILTTA 271

Query: 297 IYTNVNS 303
            YT++ +
Sbjct: 272 RYTHLTA 278


>gi|261406276|ref|YP_003242517.1| site-specific tyrosine recombinase XerS [Paenibacillus sp.
           Y412MC10]
 gi|261282739|gb|ACX64710.1| integrase family protein [Paenibacillus sp. Y412MC10]
          Length = 360

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 71/338 (21%), Positives = 124/338 (36%), Gaps = 47/338 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK---------ITIQTIRQLSY 68
            Q ++     +  LS  TL  Y  D   F  +L      +         + ++T+R  S 
Sbjct: 23  VQQFIDYKLPD--LSPSTLLEYVRDYETFFNWLRSEGLSQAASNRDVTLLELETLRMDSI 80

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL------------KKRKITTESNILNM 116
           T  R +++ RR       ++ R LS ++S   YL             KR I  +  I  +
Sbjct: 81  TGYRLYLTTRREGTNSRITVSRKLSSLRSLFHYLSQIAEDEDFYPLLKRNIMAKVEIKRI 140

Query: 117 RNLK-KSNSLP-RALNEKQALTLVDNVLLHTSHE----------TKWIDARNSAILYLLY 164
              K  +  L  + L E++    +  +     H+           +    R++ I  L+ 
Sbjct: 141 HKPKDTAAKLKGKILEEEELQDFITYIHEGYGHDVENNKQALYAHEQNKVRDACIASLIL 200

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV----PLLPSVRKAILEYYDLCPFD 220
             GLR+SE ++L   +I  +   L +  KG+               +  +  Y  L    
Sbjct: 201 NSGLRVSEVVNLNLADIDLNNKMLHVYRKGNNDETFKTPVYFRAQAKDDLEHYLQLRQTR 260

Query: 221 LNL-NIQLPLFRGIRG-----KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
             +   +  LF  +R      + +     Q  I +  +  G P S T H LRHSFAT   
Sbjct: 261 YKVPKKEKALFVALRNGQNEGQRMTKRAIQAMIIKYAKRFGKP-SLTVHKLRHSFATDYY 319

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
               D+   +  LGH    TT++Y ++  K   + +  
Sbjct: 320 LQN-DIYKTKEQLGHASTETTEVYAHLTDKTMSEAIER 356


>gi|154175082|ref|YP_001408312.1| metallo-beta-lactamase family protein [Campylobacter curvus 525.92]
 gi|112803167|gb|EAU00511.1| metallo-beta-lactamase family protein [Campylobacter curvus 525.92]
          Length = 353

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 68/283 (24%), Positives = 129/283 (45%), Gaps = 24/283 (8%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y    ++    L FY      + +++++    +   ++   T  + D S K     +
Sbjct: 73  INTYFNPLKKIYEALCFYE-----LDSLKRIDEELLSEVLAS-VTGGLSDASKKNYRISV 126

Query: 96  KSFLKYLKKRKITTESNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTSH 147
            +F  +L K+      + +   NLK        K   LP  ++E++    ++ +      
Sbjct: 127 INFFSFLDKQNEEDGKSHVFDVNLKHWGGISGSKGQKLPEFMSEEEVKKFLNAIDTA--- 183

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPS 205
           + K    RN  I+ ++   G+R+SEAL+L  ++I    +   +RI+GKG+K RIV +  +
Sbjct: 184 DFKVNTNRNRLIIKIIVFTGIRVSEALNLKRKDISEDGELYVIRIRGKGNKYRIVMIKRA 243

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHT 264
           + + +L+   +      +N +  LF   +G  L      R + Q+    G+      AH 
Sbjct: 244 LIEDLLDMIAINY----INKEGYLFINKKGTRLTQAYVSRIVEQILFRAGIRKEKNGAHM 299

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           LRH+FAT L     DL  +Q  LGH  L+T++IYT+ ++    
Sbjct: 300 LRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLK 342


>gi|254498877|ref|ZP_05111582.1| putative integrase/recombinase [Legionella drancourtii LLAP12]
 gi|254351862|gb|EET10692.1| putative integrase/recombinase [Legionella drancourtii LLAP12]
          Length = 418

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 73/317 (23%), Positives = 123/317 (38%), Gaps = 21/317 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           + F + K    + +    +R LS  T          FL F+      K  I+T RQ+   
Sbjct: 113 IPFAMQKSLYEYKKYCIEKRYLSPNTASVSISQISLFLDFMG-----KRDIKTFRQIQPK 167

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS--NSLPR 127
           +I  FI      +   +++    S ++ + K+L  R         ++ ++       +P 
Sbjct: 168 DISDFICSL--SRYSKKTISGIASYLRMYFKFLIYRGDLKNDLSQSVPSVSVPYQAKIPS 225

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
             + +    L+D     T   +     R+ A+L L    GLR+ +   LT  NI  +   
Sbjct: 226 VWDRELITKLLD-----TVDRSSPRGKRDYAMLLLACRLGLRLGDIRELTLDNIDWEAEM 280

Query: 188 LRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV-FQR 245
           + I QGK      +PL   V  A+++Y      + N   Q+ L       P +    F  
Sbjct: 281 ISITQGKTKAPLCLPLTNEVGNALIDYIKFARPETNYR-QVFLKLTQPFTPYSKNTHFYN 339

Query: 246 YIRQLRRYLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            +R  R   G+          H+LRHS AT+LL +      I  ILGH  ++TT IY   
Sbjct: 340 IVRYWRDLSGIKFRSQQHQGLHSLRHSLATYLLEDNIPFSLIADILGHASMNTTMIYAKA 399

Query: 302 NSKNGGDWMMEIYDQTH 318
           + +      + I +  H
Sbjct: 400 SVETLRQVALSINEVNH 416


>gi|255527483|ref|ZP_05394353.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296187567|ref|ZP_06855962.1| phage integrase [Clostridium carboxidivorans P7]
 gi|308390327|ref|YP_003933780.1| phage integrase family protein [Clostridium carboxidivorans P7]
 gi|255508826|gb|EET85196.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296048089|gb|EFG87528.1| phage integrase [Clostridium carboxidivorans P7]
 gi|308066834|gb|ADO12138.1| phage integrase family protein [Clostridium carboxidivorans P7]
          Length = 278

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 63/299 (21%), Positives = 124/299 (41%), Gaps = 28/299 (9%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +L E + +L    ++ G +K T++SY      +  +      E      + + +  E ++
Sbjct: 1   MLDEFEKYL----LQEGKAKNTIKSYMLHVGNYFKWFRDSFGED--PLKLYRQNVLEYKS 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--PRALNE 131
           ++ K + +     ++   L+ +  F  +L  + I +ES +    N+K   S   P  + +
Sbjct: 55  YLEKIKKEN--GNTINAKLAALTKFNDFLIYKNIQSESVLSKKDNIKIQMSYASPATITK 112

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           +        +L +  + +        A++ +L   GLRISE L+L   ++      L ++
Sbjct: 113 QDVEVFRQRILQNECNRS-------YAVVTVLSYAGLRISECLNLKIDDVNLVSKELIVR 165

Query: 192 -GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG K RIV +   +  AI EY               +F   +G  L+  V  +   + 
Sbjct: 166 EGKGSKQRIVYINTKIVDAIKEYLKER----KKVACEYMFVSNKGNRLDRTVVNKLFNKY 221

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                     T HTLRH + ++ L +G  +  + +  GH  + TT +YTN + +     
Sbjct: 222 ------SDKITPHTLRHFYCSNALESGFSVHEVANQAGHSNIHTTLLYTNPSKEELKRK 274


>gi|330874852|gb|EGH09001.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 149

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 53/149 (35%), Positives = 75/149 (50%), Gaps = 5/149 (3%)

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFR 231
            +SLT + +   Q  LR+ GKG K R+VP+       +  Y        L       LF 
Sbjct: 4   VISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAIVWVERYLRGARDELLGGKPSDVLFP 63

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
             RG  +    F   I+      G+  S + HTLRH+FATHLL++G DLR +Q +LGH  
Sbjct: 64  STRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSD 123

Query: 292 LSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           LSTTQIYT++        + E++ + HP 
Sbjct: 124 LSTTQIYTHL----ARARLQELHAKHHPR 148


>gi|190015178|ref|YP_001966799.1| integrase/recombinase [Bacillus cereus]
 gi|190015443|ref|YP_001967123.1| site-specific tyrosine recombinase XerS [Bacillus cereus]
 gi|218848308|ref|YP_002455193.1| integrase/recombinase, phage integrase family [Bacillus cereus
           AH820]
 gi|116584854|gb|ABK00969.1| integrase/recombinase [Bacillus cereus]
 gi|116585124|gb|ABK01233.1| integrase/recombinase [Bacillus cereus]
 gi|218540359|gb|ACK92755.1| integrase/recombinase, phage integrase family [Bacillus cereus
           AH820]
          Length = 361

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 76/336 (22%), Positives = 129/336 (38%), Gaps = 43/336 (12%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-----------KITIQTIRQLSYTE 70
           ++  E++  LS  TL +Y  +  +FL +L                  + I T+  L   E
Sbjct: 25  IEYAEMKTALSPATLYAYITEYEKFLNWLVNNRLAVDNGKVVTDICDVPIATLETLPLNE 84

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKY-------LKKRKITTESNILNMRNLKKSN 123
            R+F    +   I  R++ R+ S +KS  KY              + + +  +   K+  
Sbjct: 85  ARSFQRYLQGAGIETRAINRTFSALKSLFKYLAQNTENEHGENYISRNVMEKIELHKEKV 144

Query: 124 SLPR--------ALNEKQALTLVDNVLLHTSHETKWIDAR-----------NSAILYLLY 164
                         NEK  +  +  +        K I  R           + AI+ L+ 
Sbjct: 145 DAAARADDVANMIFNEKDDVAFLQFLANDYGEMLKDISPRKYSFFQRDKERDIAIISLIL 204

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-L 223
           G GLR+SE  SLT  +I   Q T+++  KG+K   +    S    + EY  + P   N  
Sbjct: 205 GTGLRVSEVASLTISSINFRQGTVKVTRKGNKRSSILATRSCLDDVQEYIKVRPLKYNCP 264

Query: 224 NIQLPLFRGI---RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
             +  LF      +   L     Q+ I +           + H LRH++AT+      DL
Sbjct: 265 ENEDLLFVTNYKGKFTQLTVRAIQKLIDKYTSA--FDEKRSPHKLRHTYATNHYKENKDL 322

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             ++  LGH  +  T IYTN+N+K   + +  +  +
Sbjct: 323 VLLRDQLGHTSVEVTSIYTNINNKKKREAIDRLEKR 358


>gi|124268171|ref|YP_001022175.1| putative site specific integrase [Methylibium petroleiphilum PM1]
 gi|124260946|gb|ABM95940.1| putative site specific integrase [Methylibium petroleiphilum PM1]
          Length = 318

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 128/327 (39%), Gaps = 37/327 (11%)

Query: 1   MEGNNLPEIVSFEL---LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK 57
           +   ++P +++ +     +  + +  ++         T ++Y    + F  + A +    
Sbjct: 10  LPAASVPALLAPDARAKARTLEFFTAHIRN-----PNTRKAYARAGQHFADWCARF---- 60

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
             I  +RQ+    +  ++ +     +   S+K+ L+ +++   +L   ++   +    +R
Sbjct: 61  -GIGDVRQVQPVHVALYVEQL---DLAAPSVKQRLAALRALFDWLVVGQVMPINPAAAVR 116

Query: 118 NLKKSNSLPR--ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
             + S    +   L+  +   LV+++   +      +  R+ A++  +     R+     
Sbjct: 117 GPRYSVKTGKTPVLSASEVRDLVESIDAES-----LVGMRDRALIGTMVYTFARVGAVTR 171

Query: 176 LTPQNIMDDQSTLRIQ--GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
           L  +++   +  L ++   KG K   +P    + + + +Y +     +  +   PLFR  
Sbjct: 172 LRVEDVYTQRRRLWVRLDEKGGKRHEMPCHHRLEEWLYDYLEAAG--IADDPGGPLFRSA 229

Query: 234 R-------GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           R        +P++     R IR+     G+  +   H+ R +  T  L NGG L   Q +
Sbjct: 230 RAATDTLTSRPMSQADVYRMIRRRAEAAGIATAIGCHSFRATGITEYLLNGGKLEIAQQM 289

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             H    TT +Y   + +     + E+
Sbjct: 290 ANHESSRTTGLY---DRRGDQIKLNEV 313


>gi|302035678|ref|YP_003796000.1| phage integrase [Candidatus Nitrospira defluvii]
 gi|300603742|emb|CBK40074.1| Phage integrase [Candidatus Nitrospira defluvii]
          Length = 373

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 111/263 (42%), Gaps = 19/263 (7%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNM 116
              +T+ +++   I  + S+R    +   S+ R L+ ++      K+  +   ++ +  +
Sbjct: 92  FGDRTLAEITPKLIVEYKSRRSATGVKPASINRELTCLRKAFSLAKREWEWCRDNPVSRV 151

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              K +    R L E +   L+D              +    ++      G+R+ E LSL
Sbjct: 152 SLEKGATKRDRWLMEDEEARLLDAC-----------PSWLRELVVFALHSGMRLGEILSL 200

Query: 177 TPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           T   +   + T  + + K ++ R VPL  +V   + E   +      L     +F  + G
Sbjct: 201 TWNGVDLFRRTATVFESKNEERRTVPLNQTVMALLTEKAKVRHIKTAL-----VFPSLAG 255

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             L+P   +R +R      G+ ++   H LRH+FAT L+  G DL  +Q +LGH     T
Sbjct: 256 TRLDPNHLRRALRPAMAKAGI-VNCHFHDLRHTFATRLVQAGVDLYKVQRLLGHKSPLMT 314

Query: 296 QIYTNVNSKNGGDWMMEIYDQTH 318
           Q Y +   ++  D +  +  ++H
Sbjct: 315 QRYAHHYPESLRDGVEILDRRSH 337


>gi|329922311|ref|ZP_08277988.1| putative site-specific tyrosine recombinase XerS [Paenibacillus sp.
           HGF5]
 gi|328942174|gb|EGG38445.1| putative site-specific tyrosine recombinase XerS [Paenibacillus sp.
           HGF5]
          Length = 360

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 71/338 (21%), Positives = 124/338 (36%), Gaps = 47/338 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK---------ITIQTIRQLSY 68
            Q ++     +  LS  TL  Y  D   F  +L      +         + ++T+R  S 
Sbjct: 23  VQQFIDYKLPD--LSPSTLLEYVRDYETFFNWLRSEGLSQAASNRDVTLLELETLRMDSI 80

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL------------KKRKITTESNILNM 116
           T  R +++ RR       ++ R LS ++S   YL             KR I  +  I  +
Sbjct: 81  TGYRLYLTTRREGTNSRITVSRKLSSLRSLFHYLSQIAEDEDFYPLLKRNIMAKVEIKRI 140

Query: 117 RNLK-KSNSLP-RALNEKQALTLVDNVLLHTSHE----------TKWIDARNSAILYLLY 164
              K  +  L  + L E++    +  +     H+           +    R++ I  L+ 
Sbjct: 141 HKPKDTAAKLKGKILEEEELQDFITYIHEGYGHDVEKNKQALYAHEQNKVRDACIASLIL 200

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV----PLLPSVRKAILEYYDLCPFD 220
             GLR+SE ++L   +I  +   L +  KG+               +  +  Y  L    
Sbjct: 201 NSGLRVSEVVNLNLADIDLNNKMLHVYRKGNNDETFKTPVYFRAQAKDDLEHYLQLRQTR 260

Query: 221 LNL-NIQLPLFRGIRG-----KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
             +   +  LF  +R      + +     Q  I +  +  G P S T H LRHSFAT   
Sbjct: 261 YKVPKKEKALFVALRNGQNEGQRMTKRAIQAMIIKYAKRFGKP-SLTVHKLRHSFATDYY 319

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
               D+   +  LGH    TT++Y ++  K   + +  
Sbjct: 320 LQN-DIYKTKEQLGHASTETTEVYAHLTDKTMSEAIER 356


>gi|153810539|ref|ZP_01963207.1| hypothetical protein RUMOBE_00920 [Ruminococcus obeum ATCC 29174]
 gi|149833718|gb|EDM88799.1| hypothetical protein RUMOBE_00920 [Ruminococcus obeum ATCC 29174]
          Length = 332

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 60/302 (19%), Positives = 112/302 (37%), Gaps = 33/302 (10%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K    +L +  IE   S  TL  Y+    + +  L          + ++ ++  +IR ++
Sbjct: 56  KILNTFLASKRIE-NCSLGTLDRYKECVTKLITSLN---------KRLQDITTNDIRYYL 105

Query: 76  S-KRRTQKIGDR---SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           +  + T+KI      +++R LS   SF  ++        + +  ++ +K    + +    
Sbjct: 106 AMYQETRKISISYMDTIRRYLS---SFFAWISDEGYININPMRRLKKIKVPQKIKKPFTP 162

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            +   L                 R+ AI+  LY    RI E + L  ++I  +++ + I 
Sbjct: 163 AEREHL----------RCSARCQRDIAIMEFLYSTAARIGEVVRLDRRDIDWNRNEIIIY 212

Query: 192 G-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           G KG K R V L       + +Y        + N  L +        L     Q  +R L
Sbjct: 213 GEKGKKERKVYLTDECAYHLRKYLLSRN---DANPALFVSSKQPHTRLGKQAIQSMLRTL 269

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +   +      H  R +  T   + G  L+ IQ   GH +  TT +Y  V+ +N     
Sbjct: 270 GQKTDI--HAHPHKFRRTLLTDAGNRGIPLQEIQHYAGHEKPDTTMMYVTVSEENVRASF 327

Query: 311 ME 312
             
Sbjct: 328 RR 329


>gi|313144154|ref|ZP_07806347.1| integrase/recombinase XerD [Helicobacter cinaedi CCUG 18818]
 gi|313129185|gb|EFR46802.1| integrase/recombinase XerD [Helicobacter cinaedi CCUG 18818]
          Length = 354

 Score =  139 bits (350), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 120/283 (42%), Gaps = 19/283 (6%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y     +   FL           T+  +    +  F+S   T  + + S K     +
Sbjct: 35  INTYSTPLLKLYTFLTQGH-----FHTMESIDEEVLSDFLS-VETSTLSNASKKNYRIAL 88

Query: 96  KSFLKYLKKRKITTE-----SNILNMRNL--KKSNSLPRALNEKQALTLVDNVLLHTSHE 148
                Y+ K+             L +  L  K    LP  LN+ +    +    +  +  
Sbjct: 89  IGLFGYIDKQNEFEGKSYVYDITLKITALQGKSGQKLPAYLNQDELERFLQA--IDEAEL 146

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQGKGDKIRIVPLLPSV 206
            + + ARN  I+ L+   G+R+SEAL+L  ++     D   ++I+GKG+K R+  +  S 
Sbjct: 147 GEKVAARNKLIIKLIVYTGIRVSEALNLRRKDIYPHLDCYIIQIRGKGNKPRVAMIRQSH 206

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTL 265
            + +L+ + L        +   LF   +GK L      + + ++    G+      AH L
Sbjct: 207 IQNLLDVW-LTQRLSFAPLHDLLFCNTKGKALTQSYIYQNVEKILAQSGIRKEKNGAHML 265

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           RHSFAT L     DL  +Q  LGH  L+T++IYT+ +SK   +
Sbjct: 266 RHSFATLLYQQKHDLVMVQEALGHADLNTSRIYTHFDSKRLRE 308


>gi|268679893|ref|YP_003304324.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268617924|gb|ACZ12289.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 353

 Score =  139 bits (350), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 59/264 (22%), Positives = 121/264 (45%), Gaps = 21/264 (7%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
            + + +++++    +  F++ + T  + D + K     + SF K+L K+    +      
Sbjct: 89  PLQLHSLKEIDEELLSEFLASQ-TGSLSDATKKNYRIALLSFFKFLDKQNEDEKGTTYQF 147

Query: 117 R---------NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           R           ++   LP  + +++    +    +  +    +  A+N  ++ ++   G
Sbjct: 148 RIELKNWGGLGGRRGEKLPAHMYKEEITRFLKA--IEETEFKPYAQAKNRLLIKMILYTG 205

Query: 168 LRISEALSLTPQNIMDDQSTL--RIQGKGDKIRIVPLLPSVRKA-ILEYYDLCPFDLNLN 224
           +R+SEAL L  ++++ +++ L   I+GKG+K R   +     +A + E+ +    D  L 
Sbjct: 206 MRVSEALGLKIKDMVKEENYLICHIRGKGNKPRTAMIKYETIEADLQEWMEYRSSDSAL- 264

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSI 283
               LF+   GKPL        + ++  + G+      AH LRH+FAT L     DL  +
Sbjct: 265 ----LFQSRTGKPLTQAYVSYVMDKMLFHAGIRKEKNGAHMLRHTFATLLYQKNRDLILV 320

Query: 284 QSILGHFRLSTTQIYTNVNSKNGG 307
           Q  LGH  L+T++IYT+ + +   
Sbjct: 321 QEALGHADLNTSRIYTHFDKERLK 344


>gi|227461216|gb|ACP39552.1| putative integron integrase [uncultured microorganism]
          Length = 311

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 76/316 (24%), Positives = 124/316 (39%), Gaps = 60/316 (18%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQ 81
           + L   R  S  T Q+Y    R+F++F              R+L   E+ AF+S     +
Sbjct: 18  RELIRIRHYSIRTEQAYLQWIRRFIVFHGRRHP--------RELGADEVTAFLSHLAIQR 69

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +   +  ++L+ I    + + + ++     + N++  KK   LP  L   +   ++   
Sbjct: 70  NVAASTQNQALNAILFLYRDVLRCQL---PWLENVQRAKKPQRLPVVLTRDEVRAVL--- 123

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV 200
                  T W+      +  L+YG GLR+ E L L  ++I      L I+  KG K R+ 
Sbjct: 124 --AQLQGTPWL------MAALVYGGGLRLLECLRLRVKDIDFQYRQLLIRDAKGQKDRVT 175

Query: 201 PLLPSVRKAIL------------------------------------EYYDLCPFDLNLN 224
            L  ++ + +                                     E+     F     
Sbjct: 176 LLPQNLLEPLRNHLVRVRTLHENDLRESCGCVHLPFALARKYPGAEREWSWQYVFPSTRR 235

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
              P     R         QR +RQ  R  G+    + HTLRHSFATHLL +G D+R++Q
Sbjct: 236 SIDPRSGIERRHHAPEDSLQRALRQAVRGAGIIKPASVHTLRHSFATHLLESGYDIRTVQ 295

Query: 285 SILGHFRLSTTQIYTN 300
            +LGH  + TT IYT+
Sbjct: 296 ELLGHADVKTTMIYTH 311


>gi|238897940|ref|YP_002923620.1| integrase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229465698|gb|ACQ67472.1| integrase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 336

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 70/298 (23%), Positives = 122/298 (40%), Gaps = 23/298 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L  ++  S+ T++S                           L+   I+  + +  
Sbjct: 29  SYLLRLRSKK--SQKTMRSCLTSVSSMFGCNEPLH------FDWSSLTRDMIQVVLQRLL 80

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +     ++   L  IK   +  +  ++    N  +++N+K+       ++  + L   +
Sbjct: 81  NEHKAPNTINLILCAIKGVAEEARASRLMDADNYHDVKNIKRIRG--ARISRGRMLECAE 138

Query: 140 NVLLHT--SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
              L T    +T     R++A++ L++GCGLR SE   L   +I  + + + I GKG+K 
Sbjct: 139 IKQLFTFLDIQTTGAAIRDAALISLMFGCGLRRSEVADLDIDHIDFENNKIDIHGKGNKE 198

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK------PLNPGVFQRYIRQLR 251
           RI  + P   K +     L    +  +   PLF  IR         L        I+QL 
Sbjct: 199 RINYMPPETAKRM----CLWVDSVRGDHSGPLFTRIRKNDDVTSDRLTTNGIGFIIKQLV 254

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             L L  S T H LR S+A+ LL NG D+ +++  LGH  + TTQ Y   + K     
Sbjct: 255 TKLSL-KSFTPHDLRRSYASLLLENGEDILTVKEALGHASVVTTQQYDKRSIKRLEAA 311


>gi|331270979|ref|YP_004385690.1| putative integrase/recombinase [Clostridium botulinum BKT015925]
 gi|329127371|gb|AEB77315.1| putative integrase/recombinase, putative [Clostridium botulinum
           BKT015925]
          Length = 272

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 135/303 (44%), Gaps = 36/303 (11%)

Query: 14  LLKERQNWLQNLEIE-RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ++K    +++ L  E +G  + T+ +Y+ D ++F+ +      E      +  +   + +
Sbjct: 1   MIKRLDEFIEYLYQEDKG--EKTIYTYKNDIKRFIEYFQKNKLE------VNTIELRKFK 52

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALN 130
            ++   +  ++  +++ +++  I+ +L ++    +       N++ +K  +   L   L 
Sbjct: 53  DYL--LQGLQLSPKTVNKNIVAIRKYLDFIHINDV-------NIKMIKIQDQGFLDDILT 103

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             +A+ ++           K  D R  A +  LY  G+R+SEA+S+  ++I +D  ++RI
Sbjct: 104 NSEAMRMI-------KEADKSHDLRAKAFICTLYYTGMRVSEAISVLVKDIDED--SIRI 154

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG K R V +   +++   +Y  +      +N    LF G RG  ++       +++ 
Sbjct: 155 LGKGKKYRTVLIPKKLQRIWGDYMTVR-----VNNSDKLFTGQRGG-ISRFTALNMVKKY 208

Query: 251 RRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                +       H  RH F  +L+  G  +  ++ + GH  + TT IYT  + K   D 
Sbjct: 209 GGKAKVKKDKVYNHAFRHLFCMNLVDKGIPIDVVKDLAGHASILTTNIYTRRSKKQLLDV 268

Query: 310 MME 312
           + +
Sbjct: 269 INQ 271


>gi|302385146|ref|YP_003820968.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302195774|gb|ADL03345.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 335

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 56/292 (19%), Positives = 107/292 (36%), Gaps = 32/292 (10%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GLS+ T+++Y    R  L          +T + IR ++  +I+ ++     +    R++ 
Sbjct: 67  GLSEKTVKAYMGAMRNMLC---------VTDKNIRHITSVDIKYYLDLYAGKGNNVRTVN 117

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
                + +   + +K  I   + +  +   K+       L   +   L            
Sbjct: 118 NERRFLSAVFTWFRKHGIINANPVEAVPIKKERKPPIDYLKGVEIEKL----------RV 167

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRK 208
              + R+ A++  L   G RI E   +  Q+I  +   + I   K    R V L      
Sbjct: 168 ACKEPRDRALMEFLLSTGARIGEVPQIRRQDIDWNTGEILIYAHKTSDYRTVYLNDVAMV 227

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            + +Y      D   +    LF G+R     ++    +  I+++    GL      H  R
Sbjct: 228 HLEKYL-----DSREDNSEALFAGVRAPYNTVHEDGLRLIIKRIGEKAGLKRRVYPHLFR 282

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQT 317
            + AT L      +  IQ ILGH   STT   Y   N  +    + +++++ 
Sbjct: 283 KTMATTLRMKDCAIEDIQQILGHKDPSTTLGFYAAANQVH----LRQVHNRY 330


>gi|218462165|ref|ZP_03502256.1| site-specific tyrosine recombinase XerD [Rhizobium etli Kim 5]
          Length = 191

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 86/188 (45%), Gaps = 8/188 (4%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             +++L+ +  ERG +  TLQSYE D      FL   +        + +    ++ A+++
Sbjct: 8   HVESFLEMMSAERGAAVNTLQSYERDLDDIRSFLNGRSIR------LTEAVSADLSAYLA 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              +Q     S  R L+ ++ F K+L    I T+     +   KK   LP+ +  ++   
Sbjct: 62  SLASQGFKPSSQARRLAAMRQFYKFLYAEGIRTDDPTGVLDAPKKGRPLPKTMGVEEVGR 121

Query: 137 LVDNVLLHTSHETK--WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           L+                  R  A+L LLY  G+R+SE +SL  + +  +   L I+GKG
Sbjct: 122 LLSQAQAEADDPAPGQLQRLRMLALLELLYATGMRVSELVSLPARVLDQEGRFLMIRGKG 181

Query: 195 DKIRIVPL 202
           +K R+VPL
Sbjct: 182 NKERLVPL 189


>gi|322688285|ref|YP_004208019.1| phage integrase [Bifidobacterium longum subsp. infantis 157F]
 gi|320459621|dbj|BAJ70241.1| phage integrase [Bifidobacterium longum subsp. infantis 157F]
          Length = 353

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 64/334 (19%), Positives = 121/334 (36%), Gaps = 26/334 (7%)

Query: 12  FELLKERQNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
            +  +  ++WL + L   RG S  T+++Y      ++ +L      + +           
Sbjct: 14  PDFWRVARDWLHHWLPKVRGSSPKTVEAYRIGLESYVRWLETTEGTQRSHIGFGHFDRAR 73

Query: 71  IRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTE---SNILNMRNLKKSNSLP 126
           +  ++   RT+    DR++   ++ ++ FL +            ++   +R    +    
Sbjct: 74  LGRWVEWMRTERGYSDRTIMLRMTTMRVFLDHAGLEHPALTALGNDAAGIRVKPPARKPV 133

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ- 185
             L E+    L+       +   +     N  +L L+Y    RI E  +LT  ++  D+ 
Sbjct: 134 DHLGEEHTKALLTAWGTGDAKSRR-----NRMLLILMYDTAARIGELAALTIADVGMDKP 188

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRG---KPLNPG 241
           + + + GK  K R+VPL    R  +  Y +      ++     PLF   R    +PL+  
Sbjct: 189 ARVTLTGKRGKSRVVPLGERTRTHLAAYLEEFHPGPSMRDGDRPLFHSTRNGAIQPLSVD 248

Query: 242 VFQRYIRQLRRYL------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                ++             +P     H +R + A  L   G  L  I  +LGH  +STT
Sbjct: 249 RIDEILKTAAARARRGTCPSMPERVHCHLIRRTRAMDLYQQGVPLPLIMQLLGHESMSTT 308

Query: 296 Q-IYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
              Y         D M +  D  +P       K 
Sbjct: 309 SAFYAFAT----LDMMRKAVDAANPGPDPDPSKE 338


>gi|163784459|ref|ZP_02179335.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880274|gb|EDP73902.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 283

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 58/311 (18%), Positives = 123/311 (39%), Gaps = 43/311 (13%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           L E    +L +  + +L+     R  S  T +  +    +F        ++ I    ++ 
Sbjct: 9   LSEGKKIKLSEFIEEYLEWCRENR--SDETFKKAQYVLNKF--------KDYIGDIYVKS 58

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           ++   +  +ISK  ++ +   +    +  IKS L    + +   E  +   + LK     
Sbjct: 59  INKKHMDDYISKLLSEGLSRTTANIHIRTIKSALTKAVEWEYVKEHPLRGYKLLKIQQKP 118

Query: 126 PRAL---NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           P+ L     K+   ++D  +                +  L    G+R+ E   L  ++I 
Sbjct: 119 PKFLLPQQIKEVEKIIDEEIWQ-------------FVFRLFIYTGMRLGEITRLKWEHIN 165

Query: 183 DDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
            ++  + ++  K    R++P+ P+++K I+ Y                    +  P    
Sbjct: 166 LNREIITVEKSKSFHSRVIPIHPTLKKDIIRYKKDIG---------------KVVPFKRR 210

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             Q  ++   R  G P     H LRH+FA+ ++  G DL+++Q +LGH    TT+IY ++
Sbjct: 211 YIQERLKNYFRKAGYP-DLRVHDLRHTFASLMVMAGVDLKTVQELLGHQSYRTTEIYAHL 269

Query: 302 NSKNGGDWMME 312
              +  + + +
Sbjct: 270 APHHLKEAIKK 280


>gi|322690987|ref|YP_004220557.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|322691351|ref|YP_004220921.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320455843|dbj|BAJ66465.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320456207|dbj|BAJ66829.1| putative phage integrase [Bifidobacterium longum subsp. longum JCM
           1217]
          Length = 351

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 63/332 (18%), Positives = 121/332 (36%), Gaps = 26/332 (7%)

Query: 12  FELLKERQNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
            +  +  ++WL + L   RG S  T+++Y      ++ +L      + +           
Sbjct: 14  PDFWRVARDWLHHWLPKVRGSSPKTVEAYRIGLESYVRWLETTEGTQRSHIGFGHFDRAR 73

Query: 71  IRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTE---SNILNMRNLKKSNSLP 126
           +  ++   RT+    DR++   ++ ++ FL +            ++   +R    +    
Sbjct: 74  LGRWVEWMRTERGYSDRTIMLRMTTMRVFLDHAGLEHPALTALGNDAAGIRVKPPARKPV 133

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ- 185
             L E+    L+       +   +     N  +L L+Y    RI E  +LT  ++  D+ 
Sbjct: 134 DHLGEEHTKALLTAWGTGDAKSRR-----NRMLLILMYDTAARIGELAALTIADVGMDKP 188

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRG---KPLNPG 241
           + + + GK  K R+VPL    R  +  Y +      ++     PLF   R    +PL+  
Sbjct: 189 ARVTLTGKRGKSRVVPLGERTRTHLAAYLEEFHPGPSMRDGDGPLFHSTRNGAIQPLSVD 248

Query: 242 VFQRYIRQLRRYL------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                ++             +P     H +R + A  L   G  L  I  +LGH  +STT
Sbjct: 249 RIDEILKTAAARARRGTCPSMPERVHCHLIRRTRAMDLYQQGVPLPLIMQLLGHESMSTT 308

Query: 296 Q-IYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
              Y         D M +  D  +P      +
Sbjct: 309 SAFYAFAT----LDMMRKAVDAANPGPDPSKE 336


>gi|294506796|ref|YP_003570854.1| Tyrosine recombinase xerD [Salinibacter ruber M8]
 gi|294343124|emb|CBH23902.1| Tyrosine recombinase xerD [Salinibacter ruber M8]
          Length = 315

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 64/301 (21%), Positives = 118/301 (39%), Gaps = 27/301 (8%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E+   EL    Q +  +   ++  S  T+ +Y      F  +       + T   +R   
Sbjct: 13  ELSLRELRDHLQAFQDDYLEDK--SDETVGTYRRSLNSFEKWFVQQNTFRFTEDGVR--- 67

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
             E + ++     + +   S+   L+ ++ F +YL      TE+    ++  ++  +  R
Sbjct: 68  --EYKRYL--MEDRDLSQVSVSTYLTALRRFCQYLTDVGELTENPATGVKGNRRPETHSR 123

Query: 128 -ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDD 184
             L E     L          +   ID R+ AI+ L+   GL   E +    ++      
Sbjct: 124 SVLTESDIEKL-----EAVVDDATQIDKRDHAIISLMLYAGLSEIEIVRADVEDLEHTLM 178

Query: 185 QSTLRIQGKGDKIRIV--PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PL 238
              LR+QGKG +++    PL P V +A+  Y D      +++ + PLF     +     L
Sbjct: 179 GPVLRVQGKGREVKDQEAPLDPPVLEAVEAYLDTRD---DVHPEDPLFVSHGHRSKGKRL 235

Query: 239 NPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
                +  I    +  G+     T H+L H+ A   L++G  L  ++  + H  L TT I
Sbjct: 236 QTRSVRSRINGYLKEAGIKRKGVTPHSLTHTAALLWLNDGMPLEEVKERMRHGTLDTTMI 295

Query: 298 Y 298
           Y
Sbjct: 296 Y 296


>gi|325911644|ref|ZP_08174052.1| phage integrase, N-terminal SAM domain protein [Lactobacillus iners
           UPII 143-D]
 gi|325476630|gb|EGC79788.1| phage integrase, N-terminal SAM domain protein [Lactobacillus iners
           UPII 143-D]
          Length = 326

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 59/295 (20%), Positives = 115/295 (38%), Gaps = 29/295 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS-KRR 79
           +L   +IE G S+ +L+ YE    +    +          +  R ++  +IR ++S  + 
Sbjct: 55  FLAAKKIE-GRSEKSLKYYESTILKMTEKVG---------KDARYITTEDIREYLSNYQL 104

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
             K    ++      + SF  +L+      +  +  +  +K   S+    ++++   + D
Sbjct: 105 NHKSSKVTIDNIRRILSSFFSWLEDEDYILKIPVRRIHKVKTGQSIKETYSDEELEIMRD 164

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           +              R+ AI+ +L   G+R+ E + L   ++  ++    + GKGDK RI
Sbjct: 165 SC----------TKIRDLAIIDMLASTGMRVGEMVLLNRDDVNFEERECMVFGKGDKERI 214

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLF--RGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           V      +  + +Y      D   +    LF       + L     +  +R+L   LG+ 
Sbjct: 215 VYFDARTKLHLEKYL-----DSRTDNNSALFTSLSAPHERLGIAGIEARLRKLGGELGIY 269

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                H  R + AT  +  G  +  +Q +LGH R+ TT  Y  V   N       
Sbjct: 270 K-VHPHKFRRTLATKAIDKGMPIEQLQKLLGHQRIDTTLQYAMVKQSNVKMAHRR 323


>gi|15921682|ref|NP_377351.1| integrase/recombinase [Sulfolobus tokodaii str. 7]
 gi|15622469|dbj|BAB66460.1| 284aa long hypothetical integrase/recombinase [Sulfolobus tokodaii
           str. 7]
          Length = 284

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 62/315 (19%), Positives = 128/315 (40%), Gaps = 56/315 (17%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++     ++  L I  G S+ T++ Y      FL ++          +  R ++  ++  
Sbjct: 11  IINPFDEFITALMIA-GASENTIRLYSIAISDFLSYIR---------KDPRTVTTYDLNN 60

Query: 74  FI-------------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           +I             ++   ++    + +  +  +  FLK+L           +     +
Sbjct: 61  WIRNILSRETKSKNENEIEKRRKKSVTARHYIIAVLRFLKWLG----VDVKPTI----PR 112

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                 RAL+E++ + + +NV             ++  ++ LL   GLR  E LS+   +
Sbjct: 113 IRRKEIRALSEEEIVKIKENVKK----------LKDRLLIQLLLDTGLRSKELLSIKKSD 162

Query: 181 IMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           I  ++  + ++  K  + RIV       + +  Y        N+     LF       + 
Sbjct: 163 INIERRYIIVRNTKNGEERIVFFTEETARLLKSYLR------NIEDNGILFN------MT 210

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                R +++L + LG+ L    H LRH+FAT  +  G  L  +Q +LGH  + TTQIYT
Sbjct: 211 YHALYRKLKRLGKKLGIDLR--PHILRHTFATQAIRKGMPLPVVQKLLGHKDIRTTQIYT 268

Query: 300 NVNSKNGGDWMMEIY 314
           ++ +++  +   +I+
Sbjct: 269 HLVTEDLQEIYKKIF 283


>gi|239620866|ref|ZP_04663897.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239516231|gb|EEQ56098.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 351

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 64/332 (19%), Positives = 122/332 (36%), Gaps = 26/332 (7%)

Query: 12  FELLKERQNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
            +  +  ++WL + L   RG S  T+++Y      ++ +L      + +           
Sbjct: 14  PDFWRVARDWLHHWLPKVRGSSPKTVEAYRIGLESYVRWLETTEGTQRSHIGFGHFDRAR 73

Query: 71  IRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTE---SNILNMRNLKKSNSLP 126
           +  ++   RT+    DR++   ++ ++ FL +            ++   +R    +    
Sbjct: 74  LGRWVEWMRTERGYSDRTIMLRMTTMRVFLDHAGLEHPALTALGNDAAGIRVKPPARKPV 133

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ- 185
             L E+ A  L+       +   +     N  +L L+Y    RI E  +LT  ++  D+ 
Sbjct: 134 DHLGEEHAKALLTAWGTGDAKSRR-----NRMLLILMYDTAARIGELAALTIADVGMDKP 188

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRG---KPLNPG 241
           + + + GK  K R+VPL    R  +  Y +      ++     PLF   R    +PL+  
Sbjct: 189 ARVTLTGKRGKSRVVPLGERTRTHLAAYLEEFHPGPSMRDGDRPLFHSTRNGAIQPLSVD 248

Query: 242 VFQRYIRQLRRYL------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                ++             +P     H +R + A  L   G  L  I  +LGH  +STT
Sbjct: 249 RIDEILKTAAARARRGTCPSMPERVHCHLIRRTRAMDLYQQGVPLPLIMQLLGHESMSTT 308

Query: 296 Q-IYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
              Y         D M +  D  +P      +
Sbjct: 309 SAFYAFAT----LDMMRKAVDAANPGPDPSKE 336


>gi|300872275|gb|ADK38965.1| IntI4 [Vibrio sp. V37(2010)]
          Length = 293

 Score =  138 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 71/313 (22%), Positives = 125/313 (39%), Gaps = 61/313 (19%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGI 95
           ++Y     +++ F        +  +        E+  F++    Q  +  ++   +L+ +
Sbjct: 1   RAYLHWITRYIHFHNKKHPSLMGDK--------EVEEFLTYLAVQGKVATKTQSLALNSL 52

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
               K + K  ++ E   +  +  +    LP  L   +   L++            +D +
Sbjct: 53  SFLYKEILKTPLSLE---IRFQRSQLERKLPVVLTRDEIRRLLEI-----------VDPK 98

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR------- 207
           +   + LLYG GLR+ E + L  Q+I  D   +RI QGKG K R V L   +        
Sbjct: 99  HQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQI 158

Query: 208 ----------------------KAILEYYDLCPFDLNLNIQLPLFR--------GIRGKP 237
                                  A+ E Y   P++   +   P F+         +R   
Sbjct: 159 ALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHH 218

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +N  V Q+ +R+  +  G+  + T HTLRHSFATH L  G D+R+   +LGH  + T Q 
Sbjct: 219 MNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHSLEVGADIRTGHELLGHTDVKTEQN 278

Query: 298 YTNVNSKNGGDWM 310
           YT+V  +     +
Sbjct: 279 YTHVLDRGASGVL 291


>gi|254426111|ref|ZP_05039828.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus
           sp. PCC 7335]
 gi|196188534|gb|EDX83499.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus
           sp. PCC 7335]
          Length = 352

 Score =  138 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 67/313 (21%), Positives = 128/313 (40%), Gaps = 35/313 (11%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
            +  + +L+     R L++ T + YE   RQF  +           +  +Q+++ +I  +
Sbjct: 29  WQRVEEFLR----VRELAENTRKVYERQLRQFYEWAQ---------KPWQQVTHRDIDRY 75

Query: 75  ISKRRT------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
               +         +   ++ +S++ +KSF K+L  +   + ++ L +  LK +   P+ 
Sbjct: 76  KQHLKALPSKQGGSLSPATINQSINSLKSFFKWLTVKDYISRNSTLTIEQLKDAPKPPKD 135

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+E +   L D +      E +     + AIL LL   GLR  E  +L  ++    +  +
Sbjct: 136 LDEAEVDALFDGLNYRGESEVR-----DLAILQLL-SHGLRAGEVSALNIEDYDGKRVHV 189

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLF----RGIRGKPLNPGVF 243
            +  K      VPL P    A+  Y   L    +    + PL     R  RGK L     
Sbjct: 190 -LGAKWGSDGKVPLKPEAIMALDSYLGWLVRQGMATTPESPLLVSLSRNSRGKRLGYRGI 248

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              +++L     L      H LRH+ AT L++ G D   +   L   R+ + +++   + 
Sbjct: 249 YDLVKELAAASELE-DVHPHRLRHTCATSLVAQGMD-SILAKRL--VRIKSDRVFARYSD 304

Query: 304 KNGGDWMMEIYDQ 316
           +     M E +D+
Sbjct: 305 RALDIKMEEAFDE 317


>gi|158341027|ref|YP_001522194.1| phage integrase [Acaryochloris marina MBIC11017]
 gi|158311268|gb|ABW32880.1| phage integrase [Acaryochloris marina MBIC11017]
          Length = 351

 Score =  138 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 67/304 (22%), Positives = 127/304 (41%), Gaps = 33/304 (10%)

Query: 7   PEIVSFELLKER-QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           P+    +L + R + ++++    R +S  T ++YE D +QF+ +         T +   +
Sbjct: 29  PKSTPADLRRTRVEEFMRS----REISSNTRKAYERDLKQFMDW---------TDKGWHE 75

Query: 66  LSYTEIRAFISKR------RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           +S  ++  + +        R Q   + ++ R+L+ ++SF K+L  R   T+   L +  L
Sbjct: 76  ISARDLDRYKNHLKVEPNQRGQLRKNATINRNLAALQSFFKWLTVRDYITKDPTLLLEKL 135

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K    LP+  ++ +      + L     +  +   R+ A+L+L+   GLR SE   L   
Sbjct: 136 KADPVLPQEFSQDEV-----DNLYQAICDRGFHTFRDRALLHLI-DHGLRASEIHRLNVG 189

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGI----R 234
           +    +  +R+  K D +  VPLL   RKAI +Y        + L    PLF       +
Sbjct: 190 DYDGQRIIIRV-AKADSVGTVPLLKKARKAIDQYKQWREQQGDVLGNDSPLFVSHSNNSK 248

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G+ L      +  + +     +  +   H  RH+ AT L+    D    + I  H    +
Sbjct: 249 GQRLQYWGIYKIFKAIADIAEVE-NAHPHRGRHTLATRLVMKDMDSVLARRITRHTSEQS 307

Query: 295 TQIY 298
              Y
Sbjct: 308 FVRY 311


>gi|323475083|gb|ADX85689.1| XerC/D integrase-recombinase protein [Sulfolobus islandicus REY15A]
 gi|323477815|gb|ADX83053.1| XerC/D integrase-recombinase protein [Sulfolobus islandicus
           HVE10/4]
          Length = 291

 Score =  138 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 57/296 (19%), Positives = 119/296 (40%), Gaps = 58/296 (19%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR------------RTQK 82
           T++ Y    + FL F+          +  R+++  ++  +IS                ++
Sbjct: 31  TIKLYSTAVKDFLDFIN---------KDPRKVTSEDLNKWISNLLNREGKVKGDEVEKRR 81

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
               +++  +  ++ FLK+L        +  +     K      +AL+E Q   +++   
Sbjct: 82  AKSVTIRYYIIAVRRFLKWL--------NVSVKPPIPKVRRKEVKALDESQIQKVLNMCK 133

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVP 201
                        +  I+ LL   GLR +E LS+  +++  + + +R++  K  + R+V 
Sbjct: 134 RTK----------DKLIIRLLLDTGLRANELLSVLVKDVDLENNMIRVRNTKNGEERVVF 183

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
                ++ + +Y      D  L              +      R +++L   + + L   
Sbjct: 184 FTDETKQLLRKYMKGKKLDEKLFD------------ITYDALYRKLKRLGNKVEIELR-- 229

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            H LRH+FAT  L  G ++ ++Q +LGH  + TTQIYT++      D +   Y + 
Sbjct: 230 PHILRHTFATLSLKRGINVITLQKLLGHKDIKTTQIYTHL----VLDDLRNEYLKA 281


>gi|300786599|ref|YP_003766890.1| phage integrase family protein [Amycolatopsis mediterranei U32]
 gi|299796113|gb|ADJ46488.1| phage integrase family protein [Amycolatopsis mediterranei U32]
          Length = 326

 Score =  138 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 58/310 (18%), Positives = 116/310 (37%), Gaps = 12/310 (3%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +  ++ + +Q +       +  S  T  +Y  D       L            +  L+  
Sbjct: 5   IHMKVSEAQQAFFAARRPRKD-SPHTTDAYRRDLAGITTLLVSELGRPAEDLEVADLTGP 63

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R+             S+ R+ S    FL +     +   + +  +   +     P+ L
Sbjct: 64  ALRSAFGAFAD-GHAKSSVLRAWSTWNQFLTFCVADGLLAGNPMGAVARPRTPALTPKPL 122

Query: 130 NEKQA-LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
             ++    L+      +         R+  ++ L    GLR +E  +L+ ++++     L
Sbjct: 123 RGEETPEQLLSAAAAGSRRARDPWPERDVLVIALGLVAGLRAAEMRALSARSLVGRAGEL 182

Query: 189 R--IQGKGDKIRIVPLLPSVRKAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           R  ++GKG + R +P+ P + + I  Y     +   ++  +   PL     G+P+  G  
Sbjct: 183 RLHVKGKGSRDRSIPVQPVLAELIERYRESCRVRFPNVRFSPGSPLLLDRAGEPIGRGAL 242

Query: 244 QRYIRQLRRYLGLPLST----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           +  ++   R  GL          H LRH+FAT L  +G     I ++LGH  L+T+Q Y 
Sbjct: 243 EYLVKSCYRGAGLHDRVPAGANLHALRHTFATRLAEDGATASEIMALLGHASLATSQNYI 302

Query: 300 NVNSKNGGDW 309
               +     
Sbjct: 303 EATGREQRAA 312


>gi|261366729|ref|ZP_05979612.1| integrase/recombinase, phage integrase family [Subdoligranulum
           variabile DSM 15176]
 gi|282571556|gb|EFB77091.1| integrase/recombinase, phage integrase family [Subdoligranulum
           variabile DSM 15176]
          Length = 327

 Score =  138 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 59/293 (20%), Positives = 118/293 (40%), Gaps = 25/293 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++    IE G S+ TL  Y       L  +    +E         ++  ++R +++  +T
Sbjct: 56  FITAKRIE-GCSEKTLNYYRQTIFAMLSGIGKLAQE---------ITTEDLRRYLTDYQT 105

Query: 81  QKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           Q+   + ++      + S+  +++      +S +  +  +K +  +    +++    + D
Sbjct: 106 QRKSSKVTIDNIRRILSSYFSWMEDEDHIVKSPVRRIHKVKTAKVIKETYSDETLEIMRD 165

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           N              R+ A++ LL   G+R+ E  +L   +I  ++    + GKG K RI
Sbjct: 166 NC----------SSIRDLAMIDLLASSGMRVGEMSALNRDDINFNERECVVFGKGSKERI 215

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           V      +  +  Y +      + N  L +        L  G  +R +R+L R L LP  
Sbjct: 216 VYFDARTKIHLQNYLESRS---DSNPALFVSLASPHGRLQIGGIERRLRELGRRLDLPR- 271

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              H  R + AT  +  G  +  +Q +LGH ++ TT  Y  V  +N      +
Sbjct: 272 VHPHKFRRTLATSAIDKGMPIEQVQQLLGHQKIDTTMHYAMVKQQNVKLAHRK 324


>gi|296164229|ref|ZP_06846822.1| site specific recombinase XerD [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295900420|gb|EFG79833.1| site specific recombinase XerD [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 342

 Score =  138 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 61/315 (19%), Positives = 115/315 (36%), Gaps = 26/315 (8%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P        +    +L +    R  S  T+ +Y  D   F         ++  I  +  +
Sbjct: 11  PVFPEAGFPQWFSAFLAD-RAVRKPSTHTVTAYRQD---FAAIAELLAGDRARIGELTPV 66

Query: 67  SYT-EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           + T E  +             S++R  S   +   +L   ++   + +  +   K   SL
Sbjct: 67  AITKEAMSAAFAAYAATHEAASIRRCWSTWNTLCAFLYTDELIPSNPMPLIGRPKVPKSL 126

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMD- 183
           P+ L  +    L+  +      + +     R++A++      GLR  E L     +I   
Sbjct: 127 PKGLGTETVSGLLAAIDADAGSQRRSDWPERDAALVLTAVLAGLRADELLRANVGDIRTT 186

Query: 184 -DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--------------LP 228
            +   + ++GKG+K R +P+  ++ K +  Y D        + +                
Sbjct: 187 TEGGVIHVRGKGNKDRRIPVEEALIKVLETYLDSRAVRFPADTKRRGASVGIGAWPTTAA 246

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLP----LSTTAHTLRHSFATHLLSNGGDLRSIQ 284
           LF G  G  +  GV Q  + +  +  GL          H LRH FAT L ++   +  + 
Sbjct: 247 LFVGSTGDRITRGVLQYRVLRAFKKAGLNSQRARGAMVHALRHEFATQLANSDTSVYVLM 306

Query: 285 SILGHFRLSTTQIYT 299
            +LGH  + T+Q Y 
Sbjct: 307 KLLGHESMVTSQRYV 321


>gi|227827993|ref|YP_002829773.1| integrase family protein [Sulfolobus islandicus M.14.25]
 gi|229585262|ref|YP_002843764.1| integrase family protein [Sulfolobus islandicus M.16.27]
 gi|238620221|ref|YP_002915047.1| integrase family protein [Sulfolobus islandicus M.16.4]
 gi|227459789|gb|ACP38475.1| integrase family protein [Sulfolobus islandicus M.14.25]
 gi|228020312|gb|ACP55719.1| integrase family protein [Sulfolobus islandicus M.16.27]
 gi|238381291|gb|ACR42379.1| integrase family protein [Sulfolobus islandicus M.16.4]
          Length = 291

 Score =  138 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 57/296 (19%), Positives = 119/296 (40%), Gaps = 58/296 (19%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR------------RTQK 82
           T++ Y    + FL F+          +  R+++  ++  +IS                ++
Sbjct: 31  TIKLYSTAVKDFLDFIN---------KDPRKVTSEDLNKWISNLLNREGKVKGDDVEKRR 81

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
               +++  +  ++ FLK+L        +  +     K      +AL+E Q   +++   
Sbjct: 82  AKSVTIRYYIIAVRRFLKWL--------NVSVKPPIPKVRRKEVKALDESQIQKVLNTCK 133

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVP 201
                        +  I+ LL   GLR +E LS+  +++  + + +R++  K  + R+V 
Sbjct: 134 RTK----------DKLIIRLLLDTGLRANELLSVLVKDVDLENNMIRVRNTKNGEERVVF 183

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
                ++ + +Y      D  L              +      R +++L   + + L   
Sbjct: 184 FTDETKQLLRKYMKGKKLDEKLFD------------ITYDALYRKLKRLGNKVEIELR-- 229

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            H LRH+FAT  L  G ++ ++Q +LGH  + TTQIYT++      D +   Y + 
Sbjct: 230 PHILRHTFATLSLKRGINVITLQKLLGHKDIKTTQIYTHL----VLDDLRNEYLKA 281


>gi|258517018|ref|YP_003193240.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257780723|gb|ACV64617.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 321

 Score =  138 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 68/309 (22%), Positives = 122/309 (39%), Gaps = 27/309 (8%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           E   L   VS+E  +  Q +L  L+   G S+ T++ Y    + F             I 
Sbjct: 15  EQEELTRSVSWE--EALQEFLL-LKKAEGKSERTIKDYGYHIKHFFRLYPDTDLADAGIL 71

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
             R + Y            +++        L  +K+F  +  K ++  E+ +   +  K 
Sbjct: 72  KRRIIDY----------MAEEVKPAYYNNKLVYMKTFFNWCVKERVLIENPVKEFKRRKA 121

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              +       Q    +   LL    ++ +   R+ A+L L    G+R  EALSL   ++
Sbjct: 122 DERI------VQFDLELLKKLLAIPDQSTYPGLRDYALLLLQLDSGIRPKEALSLLISDV 175

Query: 182 MDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
                 + I+    K    R +P+ P   KAI +  ++ P D N    +P+F    G  +
Sbjct: 176 NFKSLEVYIRAENAKTRVSRTLPISPITAKAIQKLINVRPSDWN---DVPIFCSCEGNKM 232

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
               + + + +    LG       + LRH+FA   L NGG+  ++Q  LGH  L+ T+ Y
Sbjct: 233 LGNTWYKRLSKYGEKLG--TKLYPYQLRHTFALEFLRNGGNSFALQKTLGHADLNMTKRY 290

Query: 299 TNVNSKNGG 307
            ++   +  
Sbjct: 291 VSLADNDVK 299


>gi|227830730|ref|YP_002832510.1| integrase [Sulfolobus islandicus L.S.2.15]
 gi|229581710|ref|YP_002840109.1| integrase family protein [Sulfolobus islandicus Y.N.15.51]
 gi|284998243|ref|YP_003420011.1| phage integrase family protein [Sulfolobus islandicus L.D.8.5]
 gi|227457178|gb|ACP35865.1| integrase family protein [Sulfolobus islandicus L.S.2.15]
 gi|228012426|gb|ACP48187.1| integrase family protein [Sulfolobus islandicus Y.N.15.51]
 gi|284446139|gb|ADB87641.1| phage integrase family protein [Sulfolobus islandicus L.D.8.5]
          Length = 291

 Score =  138 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 57/296 (19%), Positives = 119/296 (40%), Gaps = 58/296 (19%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR------------RTQK 82
           T++ Y    + FL F+          +  R+++  ++  +IS                ++
Sbjct: 31  TIKLYSTAVKDFLDFIN---------KDPRKVTSEDLNKWISNLLNREGKVKGDEVEKRR 81

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
               +++  +  ++ FLK+L        +  +     K      +AL+E Q   +++   
Sbjct: 82  AKSVTIRYYIIAVRRFLKWL--------NVSVKPPIPKVRRKEVKALDESQIQKVLNTCK 133

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVP 201
                        +  I+ LL   GLR +E LS+  +++  + + +R++  K  + R+V 
Sbjct: 134 RTK----------DKLIIRLLLDTGLRANELLSVLVKDVDLENNMIRVRNTKNGEERVVF 183

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
                ++ + +Y      D  L              +      R +++L   + + L   
Sbjct: 184 FTDETKQLLRKYMKGKKLDEKLFD------------ITYDALYRKLKRLGNKVEIELR-- 229

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            H LRH+FAT  L  G ++ ++Q +LGH  + TTQIYT++      D +   Y + 
Sbjct: 230 PHILRHTFATLSLKRGINVITLQKLLGHKDIKTTQIYTHL----VLDDLRNEYLKA 281


>gi|254426076|ref|ZP_05039793.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus
           sp. PCC 7335]
 gi|196188499|gb|EDX83464.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus
           sp. PCC 7335]
          Length = 326

 Score =  138 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 68/313 (21%), Positives = 127/313 (40%), Gaps = 35/313 (11%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
            +  + +L+     R L++ T + YE   RQF  ++          +  +Q+++ +I  +
Sbjct: 29  WQRVEEFLR----VRELAENTRKVYERQLRQFYEWVK---------KPWQQVTHRDIDRY 75

Query: 75  ISKR------RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
                     R   +   ++ +S++ +KSF K+L  +   + +  L +  LK +   P+ 
Sbjct: 76  KQHLKALPSKRGGSLSPATINQSINSLKSFFKWLTVKDYISRNPTLTIEQLKDAPKPPKD 135

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+E +   L D +      E +     + AIL LL   GLR  E  +L  ++    +  +
Sbjct: 136 LDEAEVDALFDGLNYRGESEVR-----DLAILQLL-SHGLRAGEVSALNIEDYDGKRVHV 189

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLF----RGIRGKPLNPGVF 243
            +  K      VPL P    A+  Y   L    +    + PL     R  RGK L     
Sbjct: 190 -LGAKWGSDGKVPLKPEAIMALDSYLGWLVRQGMATTPESPLLVSLSRNSRGKRLGYRGI 248

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              +++L     L      H LRH+ AT L++ G D   +   L   R+ + +++   + 
Sbjct: 249 YDLVKELAAASELE-DVHPHRLRHTCATSLVAQGMD-SILAKRL--VRIKSDRVFARYSD 304

Query: 304 KNGGDWMMEIYDQ 316
                 M E +D+
Sbjct: 305 HALDMKMEEAFDE 317


>gi|326943669|gb|AEA19562.1| site-specific tyrosine recombinase XerS [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 332

 Score =  138 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 74/327 (22%), Positives = 123/327 (37%), Gaps = 43/327 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEE-----------KITIQTIRQLSYTEIRAFISKRR 79
           LS  TL +Y  +  +FL +L                  + I T+  L   E R F    +
Sbjct: 5   LSPATLYAYITEFEKFLKWLISNRLAVENGKVVTNICDVPISTLENLPLNEARTFQRYLQ 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKY-------LKKRKITTESNILNMRNLKKSNSLPR----- 127
            + I  R++ R+ S +KS  KY        +     + + +  +   K+           
Sbjct: 65  GEGIETRAINRTFSALKSLFKYLALNTENEQGENYISRNVMEKIELHKEKVDAAARADDV 124

Query: 128 ---ALNEKQALTLVDNVLLHTSHETKWIDA-----------RNSAILYLLYGCGLRISEA 173
                NEK  +  +  +        K I             R+ AI+ L+ G GLR+SE 
Sbjct: 125 ANMIFNEKDDVAFLQFLANDYGEMLKDISPKKYNFFQRDKERDIAIISLILGTGLRVSEV 184

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRG 232
            SLT  +I   Q  +++  KG+K   V    S    I EY  + P   N    +  LF  
Sbjct: 185 ASLTISSINFRQGKVKVTRKGNKRSSVLATRSCLDDIQEYIKVRPSKYNCPQDEDLLFVT 244

Query: 233 I---RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
               +   L     Q+   +           + H LRH++AT+      DL  ++  LGH
Sbjct: 245 NYKGKYTQLTVRAIQKLCDKYSSA--FDEKRSPHKLRHTYATNHYKENKDLVLLRDQLGH 302

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             +  T IYTN+N++   + +  +  +
Sbjct: 303 TSVEVTSIYTNINNEKKREAVDRLERR 329


>gi|56475686|ref|YP_157275.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|56311729|emb|CAI06374.1| phage-related integrase [Aromatoleum aromaticum EbN1]
          Length = 294

 Score =  138 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 56/278 (20%), Positives = 107/278 (38%), Gaps = 21/278 (7%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M     P+  SF  L  +Q + + L  +R +S  T+  Y      FL F A    +  T 
Sbjct: 1   MRNTATPKPPSFAAL-VQQFFTEYLVAQRAVSPRTVACYRDALMLFLDFAAQKLGKTPTA 59

Query: 61  QTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITT---ESNILNM 116
             +  L    I AF+      +    R+    L+ +++FLK+  +R + +       L +
Sbjct: 60  LQLADLQPDMILAFLDHLEHERHNAIRTRNLRLTAMRAFLKFAGRRDVASLYVVERALAV 119

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              +    +   L  ++ + ++            W   R+  +  LLY  G R+SE + +
Sbjct: 120 PMKRFERPMVGFLTREEMVAVLGQP------GATWSSQRDHLLFALLYNTGARVSEIIGV 173

Query: 177 TPQNIMDDQ-STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
              +++ D  + + ++GKG K R VPL  +  + I  +  L P       +  L     G
Sbjct: 174 RVIDVVLDSAACVHLRGKGRKQRSVPLWKTTVQEIRAWLRLNPTR---RGEAALLPNRDG 230

Query: 236 KPLNPGVFQRYIRQLRRYLG------LPLSTTAHTLRH 267
           + ++     + ++             L    + H LRH
Sbjct: 231 QAMSRSNVAQRLKLAVARASEEEPSLLKKHVSPHVLRH 268


>gi|281422020|ref|ZP_06253019.1| putative integrase/recombinase XerD [Prevotella copri DSM 18205]
 gi|281403809|gb|EFB34489.1| putative integrase/recombinase XerD [Prevotella copri DSM 18205]
          Length = 298

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 68/280 (24%), Positives = 122/280 (43%), Gaps = 36/280 (12%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSL 88
             +  ++  Y     Q ++F             + + + T+I  ++S    + +      
Sbjct: 31  QYADGSIYDYRLKIAQAVLFFKKL---------LDEFTQTDIDYYLSTLLDKNRCSLSFF 81

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           K  + G++++ K +    +     ++ +  ++K   LPR L+++Q   L+ N  L     
Sbjct: 82  KHMIFGLQAYYKVM---GLKQPDGLV-LPPVRKPKRLPRVLSQEQIARLLRNCSL----- 132

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR 207
                  +  +L ++Y C LR+ EA  L   +I  D+  L + QGKG K R VP+   + 
Sbjct: 133 ------YDKTLLAIIYDCALRVGEACRLRWDDICFDRKKLFVFQGKGRKDRYVPISDQML 186

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGI----RGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
             +  Y    P D        +F+        + + PG  +  ++     + L  S T H
Sbjct: 187 VVLKAYRKKYPSD------DYVFKSHGSKTEPQRITPGYVRIILKNALARVVLDHSITIH 240

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            LRHS ATHLL NG ++  +Q  LGH RL+TT +Y +V  
Sbjct: 241 DLRHSAATHLLENGENIVHVQKRLGHARLTTTMVYLHVAD 280


>gi|237746537|ref|ZP_04577017.1| integrase/recombinase [Oxalobacter formigenes HOxBLS]
 gi|229377888|gb|EEO27979.1| integrase/recombinase [Oxalobacter formigenes HOxBLS]
          Length = 308

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 59/277 (21%), Positives = 106/277 (38%), Gaps = 23/277 (8%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
            S  T+++Y      F  ++A    +              I ++    + Q     + + 
Sbjct: 6   FSPTTIRTYRTALASFFDWMALCGTDFPA--------REHIVSWKEYLK-QTRSLATAQT 56

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHET 149
            L+ ++ F K+  +          +++ +K   S  R  L   Q L+++D      SH  
Sbjct: 57  YLAAVRLFFKWTGRYGKYP-DIASSVKGVKVGRSPKRDFLAPHQVLSVLDETKSGNSH-- 113

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQGKG--DKIRIVPLLPS 205
                R+ +++ L+  CGLR+SE      ++   +  +  L I GKG   K   V +   
Sbjct: 114 ----LRDYSMILLMVTCGLRVSEVAQANVEDLNHVGGEPVLYIHGKGRDGKTDFVNVPKK 169

Query: 206 VRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAH 263
           V  AI  Y          +     + R   G  +      R ++ + +  G      TAH
Sbjct: 170 VASAIRRYLLSRGSPAGPSPLFASVSRNNGGGRMTSHSVSRIVKTMLKSAGFDSRRLTAH 229

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +LRH+  T  L  G  L+ +Q    H  + TTQIY +
Sbjct: 230 SLRHTAVTVSLQAGATLQQVQQFARHSLIMTTQIYAH 266


>gi|317487235|ref|ZP_07946033.1| phage integrase [Bilophila wadsworthia 3_1_6]
 gi|316921525|gb|EFV42813.1| phage integrase [Bilophila wadsworthia 3_1_6]
          Length = 352

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 62/277 (22%), Positives = 113/277 (40%), Gaps = 29/277 (10%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  T++ Y     + L +    +           ++  ++ ++I + R + +  RS+   
Sbjct: 68  SLATVELYCRYVVELLNYARKPSF---------SVTARDVESYIRQCRMKGLKPRSVNTI 118

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLP----RALNEKQALTLVDNVLLHT 145
           +  +KS+ K L        +    ++  K     SLP     +L+E + L L D +  H 
Sbjct: 119 IGALKSYFKRLADTGAIALNPTAFIKKRKDGAGISLPGNLTHSLSESEMLLLFDRLAEHG 178

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLL 203
           +         +  +L  L+  GLR  EA+SL  +++     Q    + GKG K R + L 
Sbjct: 179 APRR------DILLLKTLFMTGLRGEEAVSLCWKDVTVWQGQRYFNVLGKGSKERRIYLP 232

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK--PLNPGVFQRYIRQLRRYLGLPLSTT 261
             + + + EY  L       +   P+F  +R     +        +++    L      +
Sbjct: 233 DEIDEGLNEYGKL----TGTSPNQPIFGNLRKPSRRIGRHALYHMVKKWLTTLMNRPDVS 288

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            H  RHS  T+L S G  L SIQ++ GH  + TT +Y
Sbjct: 289 PHWFRHSCFTYLASKGVRLESIQALAGHASIDTTMLY 325


>gi|284990058|ref|YP_003408612.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284063303|gb|ADB74241.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 308

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/306 (16%), Positives = 112/306 (36%), Gaps = 14/306 (4%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
            +  E    R+++  ++  E G S  T + Y     +   +         T     ++  
Sbjct: 10  AMEQEWAALRRDFAISMRAE-GKSVNTQRVYLRAVNRLGAWCVDMQRGGPT-----RIRR 63

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++ AF++   ++     +       ++ F  ++ + +   +S +  MR      +    
Sbjct: 64  QDVMAFLADM-SETWSPGTRNLVYRALQQFFGWMVREEEIEKSPMAGMRAPTAPETPVPV 122

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L E+Q   L+      T     +   R++A++ L    G R+ E   L  +++     ++
Sbjct: 123 LTEEQLRQLL-----ATCCGKTFTGRRDNALIRLFTDTGCRLGELSGLKFEDVDLTDQSI 177

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R+ GKG +IR+VP      +A+  Y  +     + +             L        +R
Sbjct: 178 RVLGKGSRIRVVPFGARTAQAMGRYLRVRERSAHASRPELWLAEKDRGVLGYSGVTLMLR 237

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN-SKNGG 307
           +  R +G+  +  AH  RH+ A    +NGG    +  ++G       + Y      +   
Sbjct: 238 RRGRQIGIA-NLHAHQFRHTAAHRWGANGGSETDLMRLMGWRSPQMLRRYAASTADERAR 296

Query: 308 DWMMEI 313
           D    +
Sbjct: 297 DAHRRM 302


>gi|224372317|ref|YP_002606689.1| phage integrase [Nautilia profundicola AmH]
 gi|223589124|gb|ACM92860.1| phage integrase [Nautilia profundicola AmH]
          Length = 269

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/306 (23%), Positives = 136/306 (44%), Gaps = 44/306 (14%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L KE   +L    +++  S  T ++YE    + + F+                       
Sbjct: 5   LQKEINKFLNF--VKKTKSHNTYKTYETVLNEAINFIEIENNIINITP------------ 50

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
              +    ++  +++ + +S ++SF ++L+      +  I+   ++K   +LP+ ++ + 
Sbjct: 51  --YRLHIAELNKKTIAKKVSALRSFFEFLETEGH--KFKIIGDEHIKVPKTLPKPVSMEH 106

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
               +           K         +  ++  GLRISEA  +T  +I  D   + I+GK
Sbjct: 107 IKKAL-----------KSATMDEYLAIITIFSLGLRISEAAGITLSDIKGD--WIEIRGK 153

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R++P+ P ++  I +Y ++ P       +  LF    G PL     +  I++  + 
Sbjct: 154 GAKTRLLPVHPKLKDFINKYLEIHP------KKEYLFE-KEGVPLGADKIRYLIQRAFKK 206

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    T H LRHSFAT++L NG  +  +  +LGH  +STTQIYT +++       ++ 
Sbjct: 207 HGI--HVTPHQLRHSFATYMLQNGARINDVSELLGHEFISTTQIYTKLSNSLK----LQN 260

Query: 314 YDQTHP 319
           Y + HP
Sbjct: 261 YLKAHP 266


>gi|32455522|ref|NP_862274.1| ORF-2 [Lactobacillus sakei]
 gi|24461249|gb|AAN61996.1|AF438419_6 ORF-2 [Lactobacillus sakei]
          Length = 319

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 56/295 (18%), Positives = 112/295 (37%), Gaps = 29/295 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RR 79
           +L    IE G S  T+  Y+                  T +TI+Q +  ++R ++S+ + 
Sbjct: 48  FLSAKTIE-GKSPKTMMYYKN---------TLTRLLTTTKKTIKQTTTNDLRNYLSEFQN 97

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           T  + + ++      + SF  +L+      +S +  +  +K    + + L+++    + +
Sbjct: 98  THGVSNVTIDNIRRILSSFFSWLEDEDFIIKSPMRRIHKVKTIKVVNKTLSDEDLEKIRE 157

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                          R+ AI+  L   G+R+ E ++L    I   + +  + GKG+  R 
Sbjct: 158 ----------TASSYRDRAIVEFLASTGVRVGEIVNLDINAIRLAERSAIVLGKGNSERE 207

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGLP 257
           V      +  +  Y          +    LF   +     L  G  +  ++++     L 
Sbjct: 208 VYFDARTKIHLERYLKTR-----TDKNEALFVSHKRPNNRLTIGTIESIVKKIGEKS-LV 261

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                H  R + AT  +  G  +  +Q +LGH R+ TT  Y  VN  N      +
Sbjct: 262 NHVHPHKFRRTLATRAIDKGMPIEQVQKLLGHVRIDTTMNYAMVNQTNVKISHRK 316


>gi|167470505|ref|ZP_02335209.1| tyrosine recombinase XerD [Yersinia pestis FV-1]
          Length = 145

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/149 (34%), Positives = 77/149 (51%), Gaps = 6/149 (4%)

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGI 233
            LT  ++   Q  +R+ GKG+K R+VPL       I  Y     P+ +N      LF   
Sbjct: 1   GLTISDVSLRQGVVRVIGKGNKERLVPLGEEAVYWIENYMEHGRPWLVNGASLDVLFPSN 60

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           R + +    F   I+      G+     + H LRH+FATHLL++G DLR +Q +LGH  L
Sbjct: 61  RSQQMTRQTFWHRIKHYAILAGIDSERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDL 120

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           STTQIYT+V ++     + +++ Q HP  
Sbjct: 121 STTQIYTHVATER----LRQLHQQHHPRA 145


>gi|134045801|ref|YP_001097287.1| phage integrase family protein [Methanococcus maripaludis C5]
 gi|132663426|gb|ABO35072.1| phage integrase family protein [Methanococcus maripaludis C5]
          Length = 287

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 116/298 (38%), Gaps = 25/298 (8%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + LE    LSK +L+ Y+     F+ +           ++   L+  +   F    R+  
Sbjct: 11  KYLEFHTSLSKDSLKYYKAGLNAFMKYFPDEN------KSWENLTVEDAIFF---YRSYN 61

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVDNV 141
           +   +  R L+ +  F  +  K+K   E+ I   +  L+        L EKQ   L+ NV
Sbjct: 62  VSKNTKIRRLNDVNRFYNWAMKQKYLVENPIETFVTTLRPEKKERAYLTEKQFKILLSNV 121

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV 200
                      D         L   G+RISE ++L  + +  +   + I  GKG K R V
Sbjct: 122 K----------DFNYYTYTLFLLKTGVRISEFVNLKVKQVDFENGIIFIHAGKGAKDRYV 171

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG--LPL 258
            +   +   +  Y ++    L        F    G+ L      +Y   L   +   +  
Sbjct: 172 FMDVELASRLEYYLEMRI--LTNLSCNNFFVNKHGRKLAEDQITKYTDYLNEVMDGSISF 229

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             T H LRH+FAT +L  G DL+S+  ILGH  + TT  Y + N +      ++   +
Sbjct: 230 RITPHILRHTFATAMLEKGMDLKSLSLILGHEDIKTTSQYLHKNKEALQKEYLKAMAR 287


>gi|331018714|gb|EGH98770.1| integrase/recombinase XerD, putative [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 320

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 125/320 (39%), Gaps = 23/320 (7%)

Query: 5   NLPEIVSFELLKERQNWLQNLEI-ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           +LP +VS    +    +L+      R     T ++Y     +FL + A      I +  +
Sbjct: 13  SLPTLVSQAGDRAGIRFLEFFTANIRN--PNTRRAYARAANEFLTWCA-----DIGVPDL 65

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
             ++   +  +I + + Q++   S+K+ L+ ++    +L   ++   +   ++R    S 
Sbjct: 66  ATVAPLHVSTWI-ELQMQRLAAPSVKQRLAALRHLFDWLVVGQVVPNNPAASVRGPSHSA 124

Query: 124 SLPR--ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              +   L+  +A  L+D++ + T         R+ A++ L+     RI  AL++  +++
Sbjct: 125 RTGKTPVLDPSEARQLLDSIDVSTPA-----GLRDRALIALMVFSFARIGAALAMRVEDV 179

Query: 182 MDDQSTLRI--QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
                 L +  + KG K   +P   S+   +  Y      D +L   L    G     L+
Sbjct: 180 YTQNRRLWVLLKEKGGKQHAMPCHHSLEAYLHAYLSGTGIDTDLKGPLFRTVGRGTSQLS 239

Query: 240 PGVF-----QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
                       +R+     G+      HT R +  T  L NGG L +  ++  H    T
Sbjct: 240 TTALPQANAHAMVRRRALAAGIKTQIGNHTFRATGITAYLKNGGTLENAAAMANHASTRT 299

Query: 295 TQIYTNVNSKNGGDWMMEIY 314
           TQ+Y         D +  IY
Sbjct: 300 TQLYDRRREDISLDEVERIY 319


>gi|255692292|ref|ZP_05415967.1| putative integrase/recombinase y4rA [Bacteroides finegoldii DSM
           17565]
 gi|260622025|gb|EEX44896.1| putative integrase/recombinase y4rA [Bacteroides finegoldii DSM
           17565]
          Length = 413

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 73/307 (23%), Positives = 130/307 (42%), Gaps = 23/307 (7%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           +L  E+ LS  T+  YE     FL  L+        +  I  +   ++  FIS       
Sbjct: 118 HLLEEQRLSPKTIDGYEHVFSYFLRHLSLR-----NVSRISDIGEDDVLTFISS------ 166

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNLKKSNSLPRALNEKQALTLVDNV 141
              S +R L+ +++F +YL ++K+  ++   ++          LP     ++ L +    
Sbjct: 167 SQNSKQRVLATMRAFCRYLYEQKLINKNIDYVIGRNRYIVKEKLPSTYTCEEVLQI---- 222

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIV 200
              + +++  +  R+ A+L L    GLR S+   L   N+  D++ +R IQ K  +   +
Sbjct: 223 -ESSVNQSTPVGKRDYAMLLLATRLGLRSSDIAGLQFSNLDWDRNIIRLIQYKTKREIEL 281

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP--- 257
           PLL  V +AI+ Y        + + Q+ L       P+N  V    +R++  +  +    
Sbjct: 282 PLLKDVGEAIINYVKYG-RPSSSSKQIFLSSLAPYNPVNGAVVSLSVRKIICHSRIDTRD 340

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H +RH+ A+ LL NG  L  I   LGH    TT  Y  ++       ++E+ D  
Sbjct: 341 RKKGPHAMRHTLASQLLRNGISLPVISETLGHKTTQTTMGYLRIDIDGLMKCVLEVPDVP 400

Query: 318 HPSITQK 324
               TQK
Sbjct: 401 SDFYTQK 407


>gi|328950733|ref|YP_004368068.1| integrase family protein [Marinithermus hydrothermalis DSM 14884]
 gi|328451057|gb|AEB11958.1| integrase family protein [Marinithermus hydrothermalis DSM 14884]
          Length = 344

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 60/299 (20%), Positives = 121/299 (40%), Gaps = 20/299 (6%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK--------- 82
           S  TL++Y    R +L + A+  E +  +  + + +  ++  +++  +T           
Sbjct: 49  SPQTLRTYRVAVRDYLAW-AWPPEAEGPVVPLLKATADDLDRYVADLQTHGGHLPETSAP 107

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +   ++   L+G+++F + L+            +   +     PR          +   L
Sbjct: 108 LKPSTIATYLAGVRAFYRALEWAGAARL--PEGVAAPRDPT--PREERRPALPLRLYRAL 163

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVP 201
           L      +    R+   + LL   GLRISE + L  +++   +  L ++ GKG K R +P
Sbjct: 164 LEHLAGEEPRVLRDRVAVRLLGEVGLRISEVIHLKVEDVHLAEGLLVVRRGKGGKQRTLP 223

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLF----RGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           L   V++ +  +  +            L     R  RG+ ++    ++ + +  R LG P
Sbjct: 224 LPRGVQRDLAAWLRVRAAHAAPGEDTLLVNLGGRKNRGRAVSDSTLRKTLNRYYRALGFP 283

Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                AH LRH+  T       DL     +LGH  ++TT IY  ++ +   + +  + D
Sbjct: 284 ARYRGAHMLRHTAGTRFYKATRDLHVTARLLGHSNINTTAIYAKMDLEGLREAVERLED 342


>gi|295090287|emb|CBK76394.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 289

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/285 (24%), Positives = 126/285 (44%), Gaps = 23/285 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +++ L+  + L+  T++ Y+   + +L +L           +    S+  +R F+   +T
Sbjct: 7   FIEMLQA-KNLAPNTIRGYQTYLKPYLSYLLERNI------SPEHASWEMVRDFLKTLQT 59

Query: 81  -QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + + DR++   +S ++ F  Y+  +          +   K    LP   +  Q    ++
Sbjct: 60  SRHLSDRTMNMVISHLQFFWIYVLHQPW---DPS-QIPFRKFRTYLPFVPDRNQVALFLN 115

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR 198
           ++           D +      +LY  GLR+ E   L  + I      L I   K    R
Sbjct: 116 SLD----------DPKARLACSILYAAGLRLDELCHLECRYIFLSSHRLYIPVSKNRSDR 165

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            VP+  S+ + I EY+  CP  +     L   +  R +P++    QR I   R  LG+  
Sbjct: 166 YVPIPESICRDIREYWYSCPAHMKPKTWLFTQQTNRSRPMDKQWLQRIILDHRNALGMDS 225

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              AH+LRH++ATH   NG DL S++S LGH  L++T IY ++ S
Sbjct: 226 RFCAHSLRHAYATHSYENGLDLLSLKSRLGHRSLNSTAIYVHLAS 270


>gi|134045984|ref|YP_001097470.1| phage integrase family protein [Methanococcus maripaludis C5]
 gi|132663609|gb|ABO35255.1| phage integrase family protein [Methanococcus maripaludis C5]
          Length = 275

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/279 (23%), Positives = 111/279 (39%), Gaps = 26/279 (9%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + L+   GLS+ TL +Y+   + FL +            +   L+  +I  F        
Sbjct: 11  RYLKFCSGLSETTLVNYKSTMKIFLNYYDDSL-------SFENLTIEDIIEFFEVYEA-- 61

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVDNV 141
               +    +  +  F ++  K K  T + + + +  LK        L +KQ+  L+ ++
Sbjct: 62  -SRNTKIYRIRSLNRFYEWANKHKYITGNPVRSFLNTLKPDKKERDYLTQKQSDDLLRSI 120

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIV 200
                     ID             G+R+SE  ++   ++  ++ T+ I+G KG K R V
Sbjct: 121 ----------IDVNFYIFTMFFIKTGVRVSEFQNILLDDVDFNEQTIFIRGGKGRKDRFV 170

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG--LPL 258
                +   +  +      D+       LF   RGK +       YI  L    G  +  
Sbjct: 171 FFDLDMGINLKRWL--RERDILKPKAPNLFLNRRGKAIGKSSITHYINYLNDVYGKKVNK 228

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
             T H LRH+FAT  +  G DLR++Q ILGH  + TT I
Sbjct: 229 RITPHILRHTFATTCVDKGMDLRTLQDILGHEDIKTTSI 267


>gi|218442682|ref|YP_002381002.1| integrase [Cyanothece sp. PCC 7424]
 gi|218175040|gb|ACK73772.1| integrase domain protein SAM domain protein [Cyanothece sp. PCC
           7424]
          Length = 319

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/306 (21%), Positives = 130/306 (42%), Gaps = 29/306 (9%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           + N  P+  +   +   + +L+     R LS  + ++Y  + ++F+ +         + +
Sbjct: 16  KANRHPQKQTDLRMARVEEFLRA----RSLSSNSQKAYRRELKRFINW---------SNK 62

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            + Q++  +I  +    + + +   S+ R+L  +KSF  +  +    T++  +++   K 
Sbjct: 63  PLNQITPRQIVQYKEYLQGESLAASSINRALCAVKSFFAW-LEETYQTQNPTVSVALNKL 121

Query: 122 SNSLPRA-LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
             SLP   L++K+   L     L      + +  R++AI+ +L   GLR  E ++L   +
Sbjct: 122 P-SLPAFDLSDKEIEAL----QLVLPQRPEVMRKRDAAIIAVLRH-GLRACEVVALNLGD 175

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGI-----R 234
               +  +R+ GK D    VPL  + R AI  Y           +   P+F        +
Sbjct: 176 YDGVRVHVRV-GKDDSGGTVPLDATARAAINAYLQQRREKGEKFSATAPMFASHSPVPGK 234

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              L        I++L    G+  + T H LRH+FAT+LL  G D    +++  H    +
Sbjct: 235 PTRLGYQGLYYLIKELGSNAGIE-NLTPHRLRHTFATNLLLKGMDSLHARTLTRHKSEVS 293

Query: 295 TQIYTN 300
            + Y  
Sbjct: 294 FKRYAK 299


>gi|255535352|ref|YP_003095723.1| probable integrase [Flavobacteriaceae bacterium 3519-10]
 gi|255341548|gb|ACU07661.1| probable integrase [Flavobacteriaceae bacterium 3519-10]
          Length = 253

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 58/255 (22%), Positives = 114/255 (44%), Gaps = 29/255 (11%)

Query: 64  RQLSYTEIRAFISKR--RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            +L   +++ ++ +   R++       K ++ G++  LK      +    + L++  + +
Sbjct: 13  TELDPEQVKDYLFELQQRSKTPSQSYFKHTVYGLRFLLK---TEGL--PYSFLHLPAIPQ 67

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              LP  L+ ++   ++ +  L           ++  ++ L+YGCGLR  E  ++  Q++
Sbjct: 68  VKKLPVILSREEIWRMLQSAEL----------LKHKLLIGLIYGCGLRCMEVRNIELQHL 117

Query: 182 MDDQSTLRI-QGKGDKIRIVPLLPSVRKAIL---------EYYDLCPFDLNLNIQLPLFR 231
             D+  L I QGKG K R VPL   + + +          +Y      + N+     L  
Sbjct: 118 DFDRKMLHIVQGKGSKDRYVPLSEHLIRGLKTFISIENPNQYLFNGNQNRNIEDIDVLAP 177

Query: 232 GIRGK--PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
             +      +    Q  I+ + +  G+      HTLRHS+ATHLL +G  +  +Q +LGH
Sbjct: 178 NRKDFDSRYSQRGVQWVIKTISKKAGITKEVHTHTLRHSYATHLLEDGVPIIMVQKLLGH 237

Query: 290 FRLSTTQIYTNVNSK 304
            R+ +T  Y +  S+
Sbjct: 238 ERIESTMEYLHSLSR 252


>gi|317124018|ref|YP_004098130.1| integrase [Intrasporangium calvum DSM 43043]
 gi|315588106|gb|ADU47403.1| integrase family protein [Intrasporangium calvum DSM 43043]
          Length = 511

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 117/293 (39%), Gaps = 13/293 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLI-FLAFYTEEKITIQTIRQLSYTEIRAFIS 76
            Q W ++L   RG+S    Q +  + R+F   FLA    +    +    +    +  +++
Sbjct: 219 LQEWTEHLRTRRGVS----QGWATEARRFAAGFLAELPVDPDGQRLWDGVDAATVNRYVT 274

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQAL 135
            R  +     S +  +S ++  L +         +    +     +   LPRAL+  Q  
Sbjct: 275 -RHGEGYSLSSRRHLVSSMRGLLDWAFLTGRLDRAISAGVLRPAPAVPGLPRALSAAQVQ 333

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+       +  +     R+ AI+ L+    LR  E  +L    +     TL + GKG 
Sbjct: 334 ALI-----AAADTSTPAGRRDRAIVVLISRLALRAGEVAALALDELNWHAGTLVVHGKGG 388

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           ++  +P+   V +A+++Y         ++  +          L+       I  L    G
Sbjct: 389 RVLTLPIPTDVGQALVDYLRDGRPPGAVDRAVFTRLRPPLVGLSSKGISGVIAHLATEAG 448

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           L  +  AH LRH+ AT +L+ GG L   +++LGH R  TT +Y   +     D
Sbjct: 449 LG-TVHAHALRHTAATAVLAAGGSLIEARALLGHARTDTTMVYARTDLAALRD 500


>gi|225418776|ref|ZP_03761965.1| hypothetical protein CLOSTASPAR_06000 [Clostridium asparagiforme
           DSM 15981]
 gi|225041697|gb|EEG51943.1| hypothetical protein CLOSTASPAR_06000 [Clostridium asparagiforme
           DSM 15981]
          Length = 267

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 106/260 (40%), Gaps = 13/260 (5%)

Query: 67  SYTEIRAFISKR---RTQKI--GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            + E   ++  R   R Q++   +R +KR +S +KSF  Y  + +    +    ++  K 
Sbjct: 3   DFEEYMEYLKYRFNDRDQEVMNKERGIKRKVSTLKSFYNYFYRAERLNNNPAARIQLPKL 62

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR------NSAILYLLYGCGLRISEALS 175
                  L+  +   L+D V        K           + A+L LL G GLR+SE + 
Sbjct: 63  REKEIIRLDVDEVALLLDEVEQGDKLTAKQKQFHEKTRVRDLALLTLLLGTGLRVSECVG 122

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIR 234
           L  +++      L++  KG K   V     V  A+ +Y       +     +  LF  ++
Sbjct: 123 LNIKDVDFKNGGLKVYRKGGKEVTVYFGEEVEDALADYLIERNHIIPESGSEDALFLSLQ 182

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            K ++    +  +++  + +      T H LR ++ T L    GD+  +  +LGH  ++T
Sbjct: 183 KKRMSVRSVENLVKKYAKTVSPLKPITPHKLRSTYGTALYQETGDIYLVADVLGHSDVNT 242

Query: 295 T-QIYTNVNSKNGGDWMMEI 313
           T + Y  +  +       ++
Sbjct: 243 TKKHYAALEDQRRRSARNKV 262


>gi|172055007|ref|YP_001806334.1| integrase-recombinase protein [Cyanothece sp. ATCC 51142]
 gi|171701288|gb|ACB54268.1| integrase-recombinase protein [Cyanothece sp. ATCC 51142]
          Length = 316

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 62/284 (21%), Positives = 118/284 (41%), Gaps = 15/284 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE----IRAFISKRRT 80
           L +E   S +T + YE D R F   ++    ++  +    ++S ++    + A+ +  + 
Sbjct: 19  LWLEDKSSAMTRREYEKDLRYFFKVMSGKEVDEELVSAFLKVSQSQANAALMAYKATLKK 78

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +++   ++ R +S +KSF+    +  +   S    +++   S  L    +          
Sbjct: 79  RELAPTTINRKISAVKSFISTANRLGLCQYS----LKDAVSSEKLKPYRDTSGIPLTEFK 134

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +L     T     R+ A+L L +   LR +E   L   + +  +  L ++GKG   +  
Sbjct: 135 KVLALCDLTTLKGKRDRALLMLFWSNALRRNEVSLLDIGDFVPSRRILWVKGKGRSEKES 194

Query: 201 -PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI----RGKPLNPGVFQRYIRQLRRYLG 255
             L P   KAI ++         +    PLF  +    RG  L+     + IR   +  G
Sbjct: 195 VDLSPKTIKAICDWLAER-GSAGIKSSSPLFIALDSRSRGSRLSGDGLYKIIRCYCKDAG 253

Query: 256 LPLSTTAHTLRHSFATHLLS-NGGDLRSIQSILGHFRLSTTQIY 298
           +    + H +RHS  T  L  + GD+R +Q +  H  L+T  IY
Sbjct: 254 IDKLMSPHRIRHSSITTALDKSDGDVRKVQKLSRHKNLNTLMIY 297


>gi|23464847|ref|NP_695450.1| integrase/recombinase [Bifidobacterium longum NCC2705]
 gi|23464848|ref|NP_695451.1| integrase/recombinase [Bifidobacterium longum NCC2705]
 gi|23465124|ref|NP_695727.1| integrase/recombinase [Bifidobacterium longum NCC2705]
 gi|46190514|ref|ZP_00206495.1| COG0582: Integrase [Bifidobacterium longum DJO10A]
 gi|189438893|ref|YP_001953974.1| Integrase [Bifidobacterium longum DJO10A]
 gi|189439173|ref|YP_001954254.1| Integrase [Bifidobacterium longum DJO10A]
 gi|189440197|ref|YP_001955278.1| Integrase [Bifidobacterium longum DJO10A]
 gi|189440668|ref|YP_001955749.1| Integrase [Bifidobacterium longum DJO10A]
 gi|227547385|ref|ZP_03977434.1| integrase/recombinase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|317483182|ref|ZP_07942178.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
 gi|23325432|gb|AAN24086.1| probable integrase/recombinase [Bifidobacterium longum NCC2705]
 gi|23325433|gb|AAN24087.1| probable integrase/recombinase [Bifidobacterium longum NCC2705]
 gi|23325741|gb|AAN24363.1| probable integrase/recombinase [Bifidobacterium longum NCC2705]
 gi|189427328|gb|ACD97476.1| Integrase [Bifidobacterium longum DJO10A]
 gi|189427608|gb|ACD97756.1| Integrase [Bifidobacterium longum DJO10A]
 gi|189428632|gb|ACD98780.1| Integrase [Bifidobacterium longum DJO10A]
 gi|189429103|gb|ACD99251.1| Integrase [Bifidobacterium longum DJO10A]
 gi|227212129|gb|EEI80025.1| integrase/recombinase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|291516769|emb|CBK70385.1| Site-specific recombinase XerD [Bifidobacterium longum subsp.
           longum F8]
 gi|316915355|gb|EFV36781.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 351

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 63/332 (18%), Positives = 121/332 (36%), Gaps = 26/332 (7%)

Query: 12  FELLKERQNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
            +  +  ++WL + L   RG S  T+++Y      ++ +L      + +           
Sbjct: 14  PDFWRVARDWLHHWLPKVRGSSPKTVEAYRIGLESYVRWLETTEGTQRSHIGFGHFDRAR 73

Query: 71  IRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTE---SNILNMRNLKKSNSLP 126
           +  ++   RT+    DR++   ++ ++ FL +            ++   +R    +    
Sbjct: 74  LGRWVEWMRTERGYSDRTIMLRMTTMRVFLDHAGLEHPALTALGNDAAGIRVKPPARKPV 133

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ- 185
             L E+    L+       +   +     N  +L L+Y    RI E  +LT  ++  D+ 
Sbjct: 134 DHLGEEHTKALLTAWGTGDAKSRR-----NRMLLILMYDTAARIGELAALTIADVGMDKP 188

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRG---KPLNPG 241
           + + + GK  K R+VPL    R  +  Y +      ++     PLF   R    +PL+  
Sbjct: 189 ARVTLTGKRGKSRVVPLGERTRTHLAAYLEEFHPGPSMRDGDRPLFHSTRNGAIQPLSVD 248

Query: 242 VFQRYIRQLRRYL------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                ++             +P     H +R + A  L   G  L  I  +LGH  +STT
Sbjct: 249 RIDEILKTAAARARRGTCPSMPERVHCHLIRRTRAMDLYQQGVPLPLIMQLLGHESMSTT 308

Query: 296 Q-IYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
              Y         D M +  D  +P      +
Sbjct: 309 SAFYAFAT----LDMMRKAVDAANPGPDPSKE 336


>gi|319942072|ref|ZP_08016391.1| hypothetical protein HMPREF9464_01610 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804456|gb|EFW01334.1| hypothetical protein HMPREF9464_01610 [Sutterella wadsworthensis
           3_1_45B]
          Length = 331

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 64/286 (22%), Positives = 116/286 (40%), Gaps = 17/286 (5%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQ-TIRQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKS 97
               R  L   A +            +L Y  +  F+      + +   S+   LS ++ 
Sbjct: 53  RRAVRSRLNIAARWLGAADAFSCEWGRLRYVHVLGFMHALADKEGLAAASVNAYLSALRG 112

Query: 98  FLKYLKKRKITTESNILNMRNLKKSN--SLP--RALNEKQALTLVDNVLLHTSHETKWID 153
             +   + +    +    ++ +K+      P  RAL   ++  L    L     +T    
Sbjct: 113 VAETAWRLRQIDLTTYAEIKAVKQLRVHREPTGRALQADESQKL----LAAVDEDTGPKA 168

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            R+ A++ LL GCGLR +E  +L  +N+     TLR+ GKG+K R V L P V + +  +
Sbjct: 169 VRDRALIALLLGCGLRRAEVTTLRMENLERSSGTLRVIGKGNKERKVFLTPEVAQKVNAW 228

Query: 214 YDLCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
            DL   +           G      PL+P    R ++  +    +    T H LR +FAT
Sbjct: 229 LDLRGTEPGWLFGRLTKVGQLILTNPLDPASIGRVVKHAQDLAKIA-PITTHDLRRTFAT 287

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            LL+   D+ ++++++GH  +STT  Y     +   + + +     
Sbjct: 288 RLLAKNVDIVAVKNLMGHANVSTTAKY----DRRSEEALQQAAQLA 329


>gi|167760042|ref|ZP_02432169.1| hypothetical protein CLOSCI_02414 [Clostridium scindens ATCC 35704]
 gi|167662335|gb|EDS06465.1| hypothetical protein CLOSCI_02414 [Clostridium scindens ATCC 35704]
          Length = 331

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 119/289 (41%), Gaps = 25/289 (8%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI- 75
           + + +L +  +E G S  T+  Y  + ++ L ++          + +R ++  +I  ++ 
Sbjct: 55  DLEEYLMSKALE-GKSPGTVDRYRYELQRLLSYVN---------KAVRDITEGDISGYMR 104

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           + +  +++ +++LK   +   SF  +L+ R     + +  +  +K    + +   +++  
Sbjct: 105 AYKAIRQVSNQTLKNVRAVYSSFFAWLRDRDRIRRNPMALVEAIKVEQKIRKPYTDEERE 164

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+ N              R+ A++   Y   +R+SE ++L   +I      L + GKG 
Sbjct: 165 MLLRNC----------STLRDKAMMEFFYSTAVRVSELVTLNRDDIRFTSKDLIVFGKGS 214

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R V L       + EY D      + +  L +        L+    +  IR+  +  G
Sbjct: 215 KERRVYLNDRTNLYMKEYLDSRT---DGSPALIVSIRRPHSRLSKTGIEDIIRRTGQRAG 271

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +      H  R +  T+ L+ G  L+    + GH +  TT  Y  V+ +
Sbjct: 272 VEK-AHPHRFRRTSLTNALNRGMPLQEAMVMAGHAKPETTMGYCTVDQE 319


>gi|186474498|ref|YP_001863469.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198457|gb|ACC76419.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 418

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 120/287 (41%), Gaps = 15/287 (5%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
             L   RGL+  T +++     +FL  +  +    I    +R++   ++  F+ + R++ 
Sbjct: 130 AYLAETRGLAASTRRNHRDRIGEFL--VNHFGNRSI---DMRRVKPRDVLNFVVE-RSKG 183

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS--NSLPRALNEKQALTLVDN 140
           +  RS       ++++L+Y +     TES I  +  +       +PR L ++Q    +  
Sbjct: 184 LSPRSAGALAGSLRTYLRYRQSVGDHTESLIAAIPKVAVWSMARIPRLLTKEQISQFL-- 241

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRI 199
              H          R  A+  LL   GLR  E  +L   +I   + TLRIQ  K  ++  
Sbjct: 242 ---HAFDTRTPSGQRGYAMARLLVDLGLRAGEVAALQLSDIDWREGTLRIQAAKCKRVDF 298

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL- 258
           +PL     +A+  Y                 R    +P+   V    +RQ     G P  
Sbjct: 299 LPLPVQTGRALANYVHDGRGRTPSRALFVRHRAPFDRPVTSAVVGCSVRQAYARCGWPAT 358

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           S   H LRHS A+ +LSNG  L+ I  +L H  L+TT IY+ ++   
Sbjct: 359 SMGPHLLRHSLASRMLSNGASLKDIADVLRHRSLNTTMIYSKIDFNR 405



 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 60/173 (34%), Gaps = 25/173 (14%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L   RQ ++  L +  G +  T+  Y      F  +L F          + Q++   IR 
Sbjct: 19  LAPSRQAYIDYL-LGHGYALHTIGHYLACLAHFSRWLTFRH------VDLDQINEELIRQ 71

Query: 74  FISKRRTQ----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           FIS              ++  + + ++  LK L+ + +             +  S P   
Sbjct: 72  FISVHLPDCDCPGRSACAVNFTRAALRHLLKMLRAQGLI------------RPRSSPLPS 119

Query: 130 NEKQALTLVDNVLLHTS--HETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                L L+D  L  T     +   + R+    +L+   G R  +   + P++
Sbjct: 120 TVVDELRLLDAYLAETRGLAASTRRNHRDRIGEFLVNHFGNRSIDMRRVKPRD 172


>gi|291586235|gb|ADE18862.1| IntI1 integrase [Pseudomonas aeruginosa]
          Length = 285

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 61/303 (20%), Positives = 115/303 (37%), Gaps = 64/303 (21%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVNWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFA 270
           SFA
Sbjct: 282 SFA 284


>gi|223041236|ref|ZP_03611485.1| hydrogenase expression/formation protein [Campylobacter rectus
           RM3267]
 gi|222877495|gb|EEF12627.1| hydrogenase expression/formation protein [Campylobacter rectus
           RM3267]
          Length = 354

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 69/284 (24%), Positives = 133/284 (46%), Gaps = 26/284 (9%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL-KRSLSG 94
           + +Y    ++    L FY      +++++Q+    +   ++   T  + D S     +S 
Sbjct: 73  INTYFNPLKKIYETLKFYE-----LESLKQIDEELLSEVLAS-VTGGLSDASKKNYRISA 126

Query: 95  IKSFLKYLKKRKITTESNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTS 146
           I  F    K+ +   ++++ ++  LK        +   LP  ++E +    ++ +    +
Sbjct: 127 INFFAFLDKQNEEDGKAHVFDV-GLKNWGGVGGARGQKLPEFMSEDEVKRFLEAIE---N 182

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLP 204
            + K    RN  I+ ++   G+R+SEALSL  ++I    +   +RI+GKG+K R+V +  
Sbjct: 183 ADFKSNANRNKLIIKIIIFTGIRVSEALSLKRKDIAEDGELYVIRIRGKGNKYRVVMIKR 242

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AH 263
            + +A L+   +      +N +  LF   +G  L      R + Q+    G+      AH
Sbjct: 243 RLIEAHLDAIAINY----INKEGYLFINKKGTRLTQAYVSRIVEQILFKAGIRKEKNGAH 298

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            LRH+FAT L     DL  +Q +LGH  L+T++IYT+ +S+   
Sbjct: 299 MLRHTFATMLYKKQKDLVLVQEVLGHASLNTSRIYTHFDSEKLK 342


>gi|91787470|ref|YP_548422.1| phage integrase [Polaromonas sp. JS666]
 gi|91696695|gb|ABE43524.1| phage integrase [Polaromonas sp. JS666]
          Length = 286

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 120/293 (40%), Gaps = 35/293 (11%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + + RQ  +  + ++RG +  T +SY    R+   +           +     +  E++A
Sbjct: 1   MTELRQRMIDAM-VQRGFAARTQESYIRAIRRMAKYYR---------RDPALYTPQEVQA 50

Query: 74  FISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           ++    + +++   S+ ++    +   + +            ++   K     P  L  +
Sbjct: 51  YLLHMVKDEQLSYSSMNQAACAAQFLFQTVLGHGREH----FHVPFAKVPAKQPELLARE 106

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRI 190
           +   L+                +   +L  +Y  GLR+SEA +L   +I    D+  +R+
Sbjct: 107 EISRLLVAC----------THPKRRMLLQTIYASGLRVSEACALRVSDIDSAPDRMCIRV 156

Query: 191 -QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIR 248
             GKG K R   L P++   +  Y        N      LF      +P+N  + QR   
Sbjct: 157 ACGKGGKGRYSILSPTLLDLLRAYVR------NYRPTTWLFANASGTQPMNIEIAQRAYH 210

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             R +  +  S   HTLRH FATHLL  G DL +IQ +LGH  ++TT  Y ++
Sbjct: 211 AARAHALITKSGGIHTLRHCFATHLLEGGVDLFTIQKLLGHGHIATTGRYLHL 263


>gi|325103320|ref|YP_004272974.1| integrase family protein [Pedobacter saltans DSM 12145]
 gi|324972168|gb|ADY51152.1| integrase family protein [Pedobacter saltans DSM 12145]
          Length = 279

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 74/287 (25%), Positives = 135/287 (47%), Gaps = 32/287 (11%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR- 78
           ++ + L I+R  S  T++SY      FL ++  +        +++ +    I  FI+++ 
Sbjct: 9   SFEKKLVIQRYAS-NTIRSYMDYAGLFLKYVDKF-------ASLKDVPIAIIETFINEKV 60

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS-NSLPRALNEKQALTL 137
             + I     K  +  IK   + +   KI      L+    K+S + LP+  ++++   L
Sbjct: 61  ENENISASYQKGLVGAIKKLYELILDEKI-----SLDYLYPKRSFSKLPKFFSKEEVRKL 115

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
           +D+            + ++ A+L  +Y CGLR++E L+L   +I      +RI Q KG+K
Sbjct: 116 LDSTE----------NLKHKAMLMTIYSCGLRLNELLNLRISDIRSSDKIIRINQSKGNK 165

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            RIV L   +   + +YY +            LF G +    +    Q  +++      +
Sbjct: 166 DRIVSLPDKLLTILRDYYQVY------KPSHYLFEGEKRNRYSERSVQLVLKKALAKAKI 219

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
               T H+LRHS+ATHL+ +G D+R +Q +LGH  + TT IYT++  
Sbjct: 220 KTEGTVHSLRHSYATHLIQSGIDVRIVQELLGHENIKTTMIYTHITD 266


>gi|67925842|ref|ZP_00519134.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera
           watsonii WH 8501]
 gi|67852313|gb|EAM47780.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera
           watsonii WH 8501]
          Length = 290

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 57/268 (21%), Positives = 108/268 (40%), Gaps = 28/268 (10%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           SKLT Q Y+ + +QF+ F+           ++ ++   +I  F+     +     ++K  
Sbjct: 23  SKLTRQHYQSNIKQFIRFIGL---------SLEEVKIEDINGFVRMLELKGNKPSTIKGK 73

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-PRALNEKQALTLVDNVLLHTSHETK 150
           LS +KS   +  K    T +  + +++ K +       +  +    +VD           
Sbjct: 74  LSTVKSLFSFAYKVGYLTSNVTVLVKSPKVNKRTASMRIEHEDIRKMVDGT--------- 124

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
               R+  I+ +++  GLR+SE L L   +    Q+ + I GKG+K R + L   +    
Sbjct: 125 -NSKRDRLIIKMMFFLGLRVSEVLRLKWSD--FYQNKVFISGKGNKERSLNLPEELFL-- 179

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
               +L       N         + + L        + +L++ LG+  +   H  RH  +
Sbjct: 180 ----ELSELKSEFNPTFVFTAYQKDEQLKRQAVNIMLNRLKKRLGIDANIHPHKFRHEHS 235

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIY 298
              L NG D+  +   LGH  +S T+ Y
Sbjct: 236 MTSLDNGCDIHLLSRSLGHGSVSITESY 263


>gi|291586256|gb|ADE18879.1| IntI1 integrase [Klebsiella pneumoniae]
          Length = 284

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 61/303 (20%), Positives = 115/303 (37%), Gaps = 64/303 (21%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVNWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFA 270
           SFA
Sbjct: 282 SFA 284


>gi|67920907|ref|ZP_00514426.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera
           watsonii WH 8501]
 gi|67857024|gb|EAM52264.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera
           watsonii WH 8501]
          Length = 279

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 58/268 (21%), Positives = 108/268 (40%), Gaps = 28/268 (10%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           SKLT Q Y+ + +QF+ F+           ++ ++   +I  F+     +     ++K  
Sbjct: 23  SKLTRQHYQSNIKQFIRFIGL---------SLEEVKIEDIHGFVRMLELKGNKPSTIKGK 73

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-PRALNEKQALTLVDNVLLHTSHETK 150
           LS +KS   +  K    T +  + +++ K +  +    +  +    +VD           
Sbjct: 74  LSTVKSLFSFAYKVGYLTSNVAVLVKSPKVNKRIASMRIENEDIRKMVDGT--------- 124

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
               R+  I+ ++Y  GLR+SE L L        Q+ + I GKG+K R + L   +    
Sbjct: 125 -NSKRDRLIIKMMYFLGLRVSEVLRLKWS--YFYQNKVFISGKGNKERSLNLPEELF--- 178

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
               +L       N         R + L        + +L++ LG+  +   H  +H  +
Sbjct: 179 ---LELSELKSEFNPTFVFTAYQRDEQLKRQAVNIMLNRLKKRLGIDANIHPHKFKHEHS 235

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIY 298
              L NG D+  +   LGH  +S T+ Y
Sbjct: 236 MTSLDNGCDIHLLSRSLGHSSVSITESY 263


>gi|228943437|ref|ZP_04105881.1| Tyrosine recombinase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228976308|ref|ZP_04136779.1| Tyrosine recombinase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228783412|gb|EEM31520.1| Tyrosine recombinase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228816217|gb|EEM62398.1| Tyrosine recombinase [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 357

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 68/330 (20%), Positives = 125/330 (37%), Gaps = 37/330 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEI 71
            + +++  E+    S  TL +Y  D R F  +L       F   + I+   +  L   ++
Sbjct: 27  IEEFVEYKELHD-ASPSTLLNYVYDFRVFFNWLLSEQIIEFKPIKDISFSDLENLKKKDV 85

Query: 72  RAFISKRR-TQKIGDRSLKRSLSGIKSFLKY------------------LKKRKITTESN 112
             F+   +  Q + + S+ R +S +KS  KY                  + K +I  +  
Sbjct: 86  ENFMRFLKLQQNMQNSSVNRKISALKSLFKYLTSLSENEDGECYFYRNVMAKIEIHKDKE 145

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID-----ARNSAILYLLYGCG 167
            LN R  +  + +    ++++ L  V         + +         R+ AIL L  G G
Sbjct: 146 TLNARAKRMRSKIFHNDDDQEFLNYVKYEHEKALTKHQLFYFLRDKERDVAILSLFLGSG 205

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           +R+SE   L  ++I   +  + +  KG+K   V + P   K + +Y ++         +L
Sbjct: 206 IRVSELADLRMEDINLKERLIDVIRKGNKEDSVWITPIALKDLEKYMEIRDNKYAPGKEL 265

Query: 228 -PLFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             +F         PL+    Q  + +  +  G     + H LRH+ A  L     D   +
Sbjct: 266 QNVFLSKYKHTAQPLSVRAIQDIVEKYTKAFG--KKMSPHKLRHTLANKLYMEEKDSLQV 323

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              LGH    T  +YT +      D +  I
Sbjct: 324 MQQLGHTSQDTALLYTQLGETTIKDSLGRI 353


>gi|255322209|ref|ZP_05363355.1| hydrogenase expression/formation protein [Campylobacter showae
           RM3277]
 gi|255300582|gb|EET79853.1| hydrogenase expression/formation protein [Campylobacter showae
           RM3277]
          Length = 354

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/284 (24%), Positives = 132/284 (46%), Gaps = 26/284 (9%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL-KRSLSG 94
           + +Y    ++    L FY      +++++Q+    +   ++   T  + D S     +S 
Sbjct: 73  INTYFNPLKKIFETLKFYE-----LESLKQIDEELLSEVLAS-VTGGLSDASKKNYRISA 126

Query: 95  IKSFLKYLKKRKITTESNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTS 146
           I  F    K+ +   ++++ ++  LK        +   LP  ++E +    ++ +    +
Sbjct: 127 INFFAFLDKQNEEDGKAHVFDI-GLKNWGGVGGARGQKLPEFMSEDEVKRFLEAIE---N 182

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLP 204
            E K    RN  I+ ++   G+R+SEAL+L  ++I    +   +RI+GKG+K R+V +  
Sbjct: 183 AEFKSNANRNKLIIKIIIFTGIRVSEALNLKRKDIAEDGELYVIRIRGKGNKYRVVMIKR 242

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AH 263
            + +A L+   +      +N +  LF   +G  L      R + Q+    G+      AH
Sbjct: 243 RLIEAHLDAIAINY----INKEGYLFINKKGTRLTQAYVSRIVEQILFKAGIRKEKNGAH 298

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            LRH+FAT L     DL  +Q  LGH  L+T++IYT+ +S+   
Sbjct: 299 MLRHTFATMLYKKQKDLVLVQEALGHASLNTSRIYTHFDSEKLK 342


>gi|295116103|emb|CBL36950.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1]
          Length = 289

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 71/285 (24%), Positives = 126/285 (44%), Gaps = 23/285 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +++ L+  + L+  T++ Y+   + +L +L           +    S+  +R F+   +T
Sbjct: 7   FIEMLQA-KNLAPNTIRGYQTYLKPYLSYLLERNI------SPEHASWEMVRDFLKTLQT 59

Query: 81  -QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + + DR++   +S ++ F  Y+  +          +   K    LP   +  Q    ++
Sbjct: 60  SRHLSDRTMNMVISHLQFFWIYVLHQPW---DPS-QIPFRKFRTYLPFVPDRNQVALFLN 115

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR 198
           ++           D +      +LY  GLR+ E   L  + I      L I   K    R
Sbjct: 116 SLD----------DPKARLACSILYAAGLRLDELCHLECRYIFLSSHRLYIPVSKNRSDR 165

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            VP+  S+ + I EY+  CP  +     L   +  R +P++    QR I   R  LG+  
Sbjct: 166 YVPIPESICRDIREYWYSCPAHMKPKTWLFTQQTNRSRPMDKQWLQRIILDRRNALGMDS 225

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              AH+LRH++ATH   NG DL S++S LGH  L++T IY ++ S
Sbjct: 226 RFCAHSLRHAYATHSYENGLDLLSLKSRLGHRSLNSTAIYVHLAS 270


>gi|224437705|ref|ZP_03658652.1| integrase/recombinase XerD [Helicobacter cinaedi CCUG 18818]
          Length = 393

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 120/283 (42%), Gaps = 19/283 (6%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y     +   FL           T+  +    +  F+S   T  + + S K     +
Sbjct: 74  INTYSTPLLKLYTFLTQGH-----FHTMESIDEEVLSDFLS-VETSTLSNASKKNYRIAL 127

Query: 96  KSFLKYLKKRKITTE-----SNILNMRNL--KKSNSLPRALNEKQALTLVDNVLLHTSHE 148
                Y+ K+             L +  L  K    LP  LN+ +    +    +  +  
Sbjct: 128 IGLFGYIDKQNEFEGKSYVYDITLKITALQGKSGQKLPAYLNQDELERFLQA--IDEAEL 185

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQGKGDKIRIVPLLPSV 206
            + + ARN  I+ L+   G+R+SEAL+L  ++     D   ++I+GKG+K R+  +  S 
Sbjct: 186 GEKVAARNKLIIKLIVYTGIRVSEALNLRRKDIYPHLDCYIIQIRGKGNKPRVAMIRQSH 245

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTL 265
            + +L+ + L        +   LF   +GK L      + + ++    G+      AH L
Sbjct: 246 IQNLLDVW-LTQRLSFAPLHDLLFCNTKGKALTQSYIYQNVEKILAQSGIRKEKNGAHML 304

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           RHSFAT L     DL  +Q  LGH  L+T++IYT+ +SK   +
Sbjct: 305 RHSFATLLYQQKHDLVMVQEALGHADLNTSRIYTHFDSKRLRE 347


>gi|284008020|emb|CBA74104.1| phage integrase [Arsenophonus nasoniae]
          Length = 318

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 121/296 (40%), Gaps = 19/296 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L  L  ++  S+ T++S                           L+   I+  + +  
Sbjct: 26  SYLLRLRSKK--SQKTMRSCLTTVSSMFGCNEPLH------FDWSSLTRDMIQVVLQRLL 77

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +     ++   L  IK   +  +  ++    N  +++N+K+      +       T + 
Sbjct: 78  NEHKAPNTINLILCAIKGVAEEARASRLMDADNYHDVKNIKRIRGARISRGRMLECTEIK 137

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           ++      +T     R++A++ L++GCGLR SE   L   +I  + + + I GKG+K RI
Sbjct: 138 HLFTFLDIQTTGAAIRDAALISLMFGCGLRRSEVADLDIDHIDFENNKIDIHGKGNKERI 197

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK------PLNPGVFQRYIRQLRRY 253
             + P   K +  + D     +  +   PLF  IR         L        I+QL   
Sbjct: 198 NYMPPETAKRMSLWVDT----VRGDHSGPLFTRIRKNDDVTSDRLTTNGIGFIIKQLVTK 253

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           L L L  T H LR S+A+ LL NG D+ +++  LGH  + TTQ Y   + K     
Sbjct: 254 LSLKL-FTPHDLRRSYASLLLENGEDILTVKEALGHASVVTTQQYDKRSIKRLEAA 308


>gi|291586244|gb|ADE18869.1| IntI1 integrase [Proteus mirabilis]
          Length = 283

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/302 (19%), Positives = 114/302 (37%), Gaps = 64/302 (21%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVNWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SF 269
           SF
Sbjct: 282 SF 283


>gi|298388138|ref|ZP_06997681.1| tyrosine recombinase [Bacteroides sp. 1_1_14]
 gi|298259111|gb|EFI01992.1| tyrosine recombinase [Bacteroides sp. 1_1_14]
          Length = 320

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 104/254 (40%), Gaps = 30/254 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L+  R  S  T++ Y    R F                I  ++  EI  ++   
Sbjct: 94  EGYLEKLQQVR-YSDHTVRVYTSYFRDFQQHFEGRK--------IETVTPGEINDYLLYL 144

Query: 79  -RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + I      + ++ IK + + +  ++         +   K+  +LP  L++++   +
Sbjct: 145 IHEKNISSCQQNQRINAIKFYYEKVLGQERR----CYKVNRAKREKTLPDVLSKEEIKKI 200

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDK 196
           +D             D R   +  +LY  GLRISE L L P +I + +S +R++ GKG K
Sbjct: 201 LDA---------TVTDLRFFCMFSILYSAGLRISELLELKPGDINESRSLIRVRQGKGKK 251

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R   L   + K + EY  L         ++ LF    G+P    +  + ++   R  G+
Sbjct: 252 DRYTLLSKPLMKKLTEYNRLY------KPKVWLFEHRPGEPFTESIVSKRLKAAAREAGI 305

Query: 257 PLSTTAHTLRHSFA 270
                 H LRHSFA
Sbjct: 306 TKRIYPHLLRHSFA 319


>gi|172034883|ref|YP_001798679.1| integrase/recombinase [Cyanothece sp. ATCC 51142]
 gi|171701647|gb|ACB54625.1| integrase/recombinase [Cyanothece sp. ATCC 51142]
          Length = 362

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 127/358 (35%), Gaps = 65/358 (18%)

Query: 1   MEGNNLP-EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
           M  ++ P ++   +LL     +++    +   +  T+++Y C  +QF  +        + 
Sbjct: 1   MLTHSTPSDLTPTDLLDNFAAFVRLDTADGNAADDTVKTYACTVKQFFSWCHVQRLHPL- 59

Query: 60  IQTIRQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
                  +  +I+ +       Q     ++   L+ ++ F     +R +   +  L ++ 
Sbjct: 60  -----DATRDDIKLYRRWLVEIQDYKCATIALKLTVVRRFYAGAVERGLILANPALGIKP 114

Query: 119 LKK---SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
            ++          L E +   L    L     E      R+  ++ ++   G R  E   
Sbjct: 115 PRENIDPAERINYLEEAEVTGL----LASLPTENTIGGLRDRFLVAVMVLEGCRTVEMHR 170

Query: 176 LTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRG 232
            +  +I+   S   +R+ GK  + RIVPL P + K + +Y          LN   PLF  
Sbjct: 171 ASIGDIVKRGSDIGIRVSGKRSR-RIVPLTPDLAKLLNKYLQARKRSGEALNGDTPLFIA 229

Query: 233 IRGK----PLNPGVFQRYIRQLRRYLGLP------------------------------- 257
           +  +     L+    QR I +  R  GL                                
Sbjct: 230 LDKRTYGGRLSRRSIQRVIDKYLRAAGLKEQPTKHKSKKRASNKSHQPSNGEKQNSSQSA 289

Query: 258 -----------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
                         +AH+LRH+  T  +  G DLR +Q +LGH    TT +Y +V  +
Sbjct: 290 SAKSHKFQQPQRQLSAHSLRHTAGTLAIRAGSDLRQVQDLLGHADPRTTALYAHVADR 347


>gi|152995812|ref|YP_001340647.1| phage integrase family protein [Marinomonas sp. MWYL1]
 gi|150836736|gb|ABR70712.1| phage integrase family protein [Marinomonas sp. MWYL1]
          Length = 283

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 115/285 (40%), Gaps = 31/285 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           R+  +  + +E G S  T ++Y     +   +               +L+ T+I+ ++  
Sbjct: 5   RKQVIDQMTLE-GFSVSTQRAYLYQLTEVARYFHM---------PPDRLNQTDIQQYLLY 54

Query: 78  R-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             R +     S +++L  +    + +  + +      +++ +  KS  +P  L   +   
Sbjct: 55  LIRERGWSWSSCRQALHALNFLYRKVANKTM----PSVSLPHPNKSQKIPDLLYPDEVQA 110

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGD 195
           ++                +    + L Y  G+RISE   L   ++      ++++ GKG 
Sbjct: 111 MIRCC----------QHPKVYVAMVLAYTTGMRISEVNELRVNDLDLTHHCIKVRQGKGQ 160

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           + R V    S+++ +  Y+            + ++   + +PL+    +   ++  +  G
Sbjct: 161 QDRYVLFPQSLQQVLGRYWQRYEP-----CDVVVYGLDKHRPLHSKYLRLETKEAAKRAG 215

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +      H+LRH+FA H L  G  L  +Q++LGH ++ TT  Y  
Sbjct: 216 IQKCIRFHSLRHAFACHQLLAGMPLPRLQALLGHKQIQTTFRYLQ 260


>gi|10956379|ref|NP_052828.1| site-specific tyrosine recombinase XerS [Bacillus anthracis]
 gi|21392873|ref|NP_652953.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str.
           A2012]
 gi|47566509|ref|YP_022461.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str.
           'Ames Ancestor']
 gi|165873427|ref|ZP_02218026.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0488]
 gi|167636785|ref|ZP_02395068.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0442]
 gi|167642201|ref|ZP_02400423.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0193]
 gi|170689789|ref|ZP_02880959.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0465]
 gi|170709646|ref|ZP_02900046.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0389]
 gi|177656331|ref|ZP_02937224.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0174]
 gi|190569527|ref|ZP_03022388.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227811617|ref|YP_002811628.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. CDC 684]
 gi|229599771|ref|YP_002860851.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0248]
 gi|254687687|ref|ZP_05151543.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str.
           CNEVA-9066]
 gi|254739175|ref|ZP_05196877.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str.
           Western North America USA6153]
 gi|254744974|ref|ZP_05202651.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str.
           Kruger B]
 gi|254762469|ref|ZP_05214309.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str.
           Australia 94]
 gi|301068233|ref|YP_003787004.1| tyrosine recombinase [Bacillus anthracis CI]
 gi|4894348|gb|AAD32436.1| pXO1-132 [Bacillus anthracis]
 gi|20520260|gb|AAM26142.1| integrase/recombinase, phage integrase family, (pXO1-132) [Bacillus
           anthracis str. A2012]
 gi|47552324|gb|AAT35489.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|164710802|gb|EDR16380.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0488]
 gi|167509884|gb|EDR85308.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0193]
 gi|167527711|gb|EDR90550.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0442]
 gi|170125607|gb|EDS94534.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0389]
 gi|170666164|gb|EDT16957.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0465]
 gi|172079691|gb|EDT64808.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0174]
 gi|190559306|gb|EDV13330.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227007971|gb|ACP17713.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. CDC 684]
 gi|229269390|gb|ACQ51026.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0248]
 gi|300379318|gb|ADK08221.1| tyrosine recombinase [Bacillus cereus biovar anthracis str. CI]
          Length = 361

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 75/336 (22%), Positives = 129/336 (38%), Gaps = 43/336 (12%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-----------KITIQTIRQLSYTE 70
           ++  E++  LS  TL +Y  +  +FL +L                  + I T+  L   E
Sbjct: 25  IEYAEMKTALSPATLYAYITEFEKFLKWLISNRLAVENGKVVTNICDVPISTLENLPLNE 84

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-------RKITTESNILNMRNLKKSN 123
            R F    + + I  R++ R+ S +KS  KYL +           + + +  +   K+  
Sbjct: 85  ARTFQRYLQGEGIETRAINRTFSALKSLFKYLAQNTENEQGENYISRNVMDKIELHKEKV 144

Query: 124 SLPR--------ALNEKQALTLVDNVLLHTSHETKWIDA-----------RNSAILYLLY 164
                         NEK  +  +  +        K I             R+ AI+ L+ 
Sbjct: 145 DAAARADDVANMIFNEKDDVAFLQFLANDYGEMLKDISPKKYSFFQRDKERDIAIISLIL 204

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-L 223
           G GLR+SE  SLT  +I   Q  +++  KG+K   V    S    + EY  + P   N  
Sbjct: 205 GTGLRVSEVASLTISSINFRQGKVKVTRKGNKRSSVLATRSCLDDVQEYIKVRPSKYNCP 264

Query: 224 NIQLPLFRGI---RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
             +  LF      +   L     Q+   +           + H LRH++AT+      DL
Sbjct: 265 QDEDLLFVTNYKGKYTQLTVRAIQKLCDKYSSA--FDEKRSPHKLRHTYATNHYKENKDL 322

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             ++  LGH  +  T IYTN+N++   + +  +  +
Sbjct: 323 VLLRDQLGHTSVEVTSIYTNINNEKKREAVDRLERR 358


>gi|152996970|ref|YP_001341805.1| phage integrase family protein [Marinomonas sp. MWYL1]
 gi|150837894|gb|ABR71870.1| phage integrase family protein [Marinomonas sp. MWYL1]
          Length = 283

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 115/285 (40%), Gaps = 31/285 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           R+  +  + +E G S  T ++Y     +   +               +L+ T+I+ ++  
Sbjct: 5   RKQVIDQMTLE-GFSVSTQRAYLYQLTEVARYFRM---------PPDRLNQTDIQQYLLY 54

Query: 78  R-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             R +     S +++L  +    + +  + +      +++ +  KS  +P  L   +   
Sbjct: 55  LIRERGWSWSSCRQALHALNFLYRKVANKTM----PSVSLPHPNKSQKIPDLLYPDEVQA 110

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGD 195
           ++                +    + L Y  G+RISE   L   ++      ++++ GKG 
Sbjct: 111 MIRCC----------QHPKVYVAMVLAYTTGMRISEVNELRVNDLDLTHHCIKVRQGKGQ 160

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           + R V    S+++ +  Y+            + ++   + +PL+    +   ++  +  G
Sbjct: 161 QDRYVLFPQSLQQVLGRYWQRYEP-----CDVVVYGLDKHRPLHSKYLRLETKEAAKRAG 215

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +      H+LRH+FA H L  G  L  +Q++LGH ++ TT  Y  
Sbjct: 216 IQKCIRFHSLRHAFACHQLLAGMPLLRLQALLGHKQIQTTFRYLQ 260


>gi|32471146|ref|NP_864139.1| integrase [Rhodopirellula baltica SH 1]
 gi|32396848|emb|CAD71816.1| integrase [Rhodopirellula baltica SH 1]
          Length = 292

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 50/147 (34%), Positives = 76/147 (51%), Gaps = 4/147 (2%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY 214
           +  +L +LY  GLR++E   L   +   D+  +R+Q GKG K R V L   +   + + +
Sbjct: 12  DKLLLTVLYATGLRVAEVARLQWSDFDFDRQQIRVQLGKGKKDRYVMLADDLLPLMRQLW 71

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                   +    P       + L+P   QR ++Q R   G+  + T H+ RHSFATHL+
Sbjct: 72  R---HTKGVGYLFPSEGRRVDRHLSPRTIQRAVKQARILSGIGKAVTPHSFRHSFATHLI 128

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301
            +G D+R IQ +LGH  L TT +YT V
Sbjct: 129 ESGTDIRFIQKLLGHTNLETTSLYTKV 155


>gi|295696553|ref|YP_003589791.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295412155|gb|ADG06647.1| integrase family protein [Bacillus tusciae DSM 2912]
          Length = 305

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 68/309 (22%), Positives = 128/309 (41%), Gaps = 27/309 (8%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
              Q +L   + E G S LTL+ Y      F      + E   T   +  L    + A  
Sbjct: 8   DAFQEFLLCKQAE-GRSPLTLRDYHNHVPAF------FQEHPDTWPDVHALKRAVV-AHF 59

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +  R +     +L+R    +K+F  +  + +   ++ +  +   +K++  PR L+++   
Sbjct: 60  AGLRERSATHYNLRRE--YLKAFFSWCVREEYLPKNPVDGIPK-RKNDGTPRNLDDQTLK 116

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QG 192
            L++        ++ +   R+ A++ L    G+R  EAL L P +       + +     
Sbjct: 117 RLLE-----LPDKSTYAGVRDHALVLLQLDTGIRPGEALQLLPAHFNLGALEVTVPSATA 171

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K    R V + P   KAI     + P D      +P+F    G+P++  ++ + + Q  R
Sbjct: 172 KTRTARTVVMSPQTAKAIRRLLSVRPAD--WTDDVPVFATYSGRPMDRNMWGKRLAQYGR 229

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            LG+    T + LRHS A   L  GG + ++Q  LGH  L  T+ Y ++   +    + +
Sbjct: 230 TLGV--RITPYMLRHSSALMFLRGGGHVFALQRQLGHTSLVMTKRYVHLADSD----LHQ 283

Query: 313 IYDQTHPSI 321
            +    P  
Sbjct: 284 QHAVASPVA 292


>gi|327399861|ref|YP_004346892.1| site-specific recombinase, phage integrase family protein
           [Lactobacillus amylovorus GRL 1112]
 gi|327399877|ref|YP_004346908.1| site-specific recombinase, phage integrase family protein
           [Lactobacillus amylovorus GRL 1112]
 gi|327182531|gb|AEA32966.1| site-specific recombinase, phage integrase family protein
           [Lactobacillus amylovorus GRL 1112]
 gi|327182547|gb|AEA32982.1| site-specific recombinase, phage integrase family protein
           [Lactobacillus amylovorus GRL 1112]
          Length = 284

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 63/297 (21%), Positives = 118/297 (39%), Gaps = 31/297 (10%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K    ++++L ++ G ++ TL  YE   ++F  F       ++    + Q+  +++  F+
Sbjct: 8   KLIDEFIEDLRLQ-GRAEGTLLEYEMRLKEFAEFF------QLKALALDQVKKSDLTEFM 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            ++ +  +   +++  LS  + F  +   +   +E        +      P+  N K+  
Sbjct: 61  EQKLSNCLKVSTIRGKLSTFRVFCLWAVNKNYLSE-------VIISPQDYPKNTNVKRIR 113

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QG 192
            L D  L    H    +     A  YLL G G R++EA +L  +++    +++ I     
Sbjct: 114 RLSDENLTIFKHYIDTLQPNARAAFYLLIGSGCRVAEAANLRAEDVTLRGNSVYIDIRNA 173

Query: 193 KGDKIRIVPLLP-SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           K    R +P++     K + +Y      D       PLF       L+    Q Y     
Sbjct: 174 KWGSDRNIPIVDADAAKIVWKYRTEVEVD-----NRPLF------RLSKRTLQNYATNFA 222

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +  G+      H LRH+FA  L   G  L ++Q +LGH  L  T  Y      +  D
Sbjct: 223 KSTGINF--YCHLLRHTFAGLLTEKGVPLTTVQYLLGHKSLGMTAHYAQSARVDITD 277


>gi|322688580|ref|YP_004208314.1| phage integrase [Bifidobacterium longum subsp. infantis 157F]
 gi|320459916|dbj|BAJ70536.1| putative phage integrase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 343

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 63/332 (18%), Positives = 121/332 (36%), Gaps = 26/332 (7%)

Query: 12  FELLKERQNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
            +  +  ++WL + L   RG S  T+++Y      ++ +L      + +           
Sbjct: 6   PDFWRVARDWLHHWLPKVRGSSPKTVEAYRIGLESYVRWLETTEGTQRSHIGFGHFDRAR 65

Query: 71  IRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTE---SNILNMRNLKKSNSLP 126
           +  ++   RT+    DR++   ++ ++ FL +            ++   +R    +    
Sbjct: 66  LGRWVEWMRTERGYSDRTIMLRMTTMRVFLDHAGLEHPALTALGNDAAGIRVKPPARKPV 125

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ- 185
             L E+    L+       +   +     N  +L L+Y    RI E  +LT  ++  D+ 
Sbjct: 126 DHLGEEHTKALLTAWGTGDAKSRR-----NRMLLILMYDTAARIGELAALTIADVGMDKP 180

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRG---KPLNPG 241
           + + + GK  K R+VPL    R  +  Y +      ++     PLF   R    +PL+  
Sbjct: 181 ARVTLTGKRGKSRVVPLGERTRTHLAAYLEEFHPGPSMRDGDRPLFHSTRNGAIQPLSVD 240

Query: 242 VFQRYIRQLRRYL------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                ++             +P     H +R + A  L   G  L  I  +LGH  +STT
Sbjct: 241 RIDEILKTAAARARRGTCPSMPERVHCHLIRRTRAMDLYQQGVPLPLIMQLLGHESMSTT 300

Query: 296 Q-IYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
              Y         D M +  D  +P      +
Sbjct: 301 SAFYAFAT----LDMMRKAVDAANPGPDPSKE 328


>gi|294101938|ref|YP_003553796.1| integrase family protein [Aminobacterium colombiense DSM 12261]
 gi|293616918|gb|ADE57072.1| integrase family protein [Aminobacterium colombiense DSM 12261]
          Length = 311

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 61/293 (20%), Positives = 117/293 (39%), Gaps = 30/293 (10%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GL+  T++ Y     +F         E +     ++     +  ++S  R+         
Sbjct: 30  GLAPRTVKDYRYHLTRFFTAY----PEGLNPDKAKRC----VLEYMSLERSPGYH----N 77

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             L  ++ F ++     I   +    +R+ K    +       Q    V   LL    ++
Sbjct: 78  MVLKYLRCFFRWTVNEGILYSNPCSGIRSRKAQPKI------AQHSPDVVKALLALPDQS 131

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSV 206
            +   R+ A+L L    G+R  EALSL  +++      + ++    K    R +P+    
Sbjct: 132 TYTGLRSYALLLLSLDTGIRPREALSLRVEDVSIPARVVVVRAETAKTRVQRTLPISDQT 191

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            +AI++   + P +       PLF    G+PL    +   ++     +G     T ++LR
Sbjct: 192 AQAIMKLVSIRPKEWR---NAPLFCSRDGQPLRVNSWYHTVKGYGEKIG--ADITPYSLR 246

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           H FA + L N G+  ++Q I+GH  L TT+IY  +   +    + E ++   P
Sbjct: 247 HLFALYFLRNNGNTFALQRIMGHDNLDTTKIYVALAQSD----LEEQHELASP 295


>gi|309792261|ref|ZP_07686733.1| integrase domain-containing protein [Oscillochloris trichoides DG6]
 gi|308225802|gb|EFO79558.1| integrase domain-containing protein [Oscillochloris trichoides DG6]
          Length = 301

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/304 (21%), Positives = 114/304 (37%), Gaps = 33/304 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L +++ E+GLS  T+ SY CD R         T   +  + +  ++  +I++F+  R
Sbjct: 2   ETFLNDIQAEQGLSGNTITSYRCDLR---------TAAGVVDKPLETITTLDIQSFLDSR 52

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q     +  R ++ +  F ++   R     + +  +     +   P+ +  +     +
Sbjct: 53  NEQ---PGTTNRRIASLGRFFRWAVARGYCLYNPLEQIAGRYHTEHRPQPIVSEAERRAL 109

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKGD 195
           D  +   S            I  LL   G+R  E L+L   +++ +      L    K  
Sbjct: 110 DTAIAACSQP-------YRLIFTLLREIGVRTDEVLNLNVGDVILETGREVLLVQDTKSG 162

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLN--IQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
             R+V L P      L        DL  N     PLF   RGK  +     R   Q+ R 
Sbjct: 163 NKRMVALTPDAMPRSLRGLRSWMRDLGPNPAPDAPLFCSSRGKRASYDTLHRRWVQVCRA 222

Query: 254 LGL--------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             L            T H LRH+ A  L+      + ++ ILGH    +T+ Y ++  K 
Sbjct: 223 AHLIDLVEGKEQPRYTLHHLRHTAAAELI-AFYPEQVVRRILGHRDPRSTRRYADIVRKG 281

Query: 306 GGDW 309
             + 
Sbjct: 282 AHNA 285


>gi|315646660|ref|ZP_07899777.1| site-specific tyrosine recombinase XerS [Paenibacillus vortex V453]
 gi|315277986|gb|EFU41307.1| site-specific tyrosine recombinase XerS [Paenibacillus vortex V453]
          Length = 360

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 72/342 (21%), Positives = 127/342 (37%), Gaps = 47/342 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT------EEKITIQTIRQL---SY 68
            Q ++     +  LS  TL  Y  D + F  +L           ++IT+  + +L   S 
Sbjct: 23  VQQFIDYKLPD--LSPSTLLEYVRDYQTFFNWLRSEGLSQASSNQEITLMELEKLRMESI 80

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL------------KKRKITTESNILNM 116
           T  R +++ RR       ++ R LS ++S   YL             KR I  +  I  +
Sbjct: 81  TSYRLYLTTRRDGTNSRITVSRKLSSLRSLFHYLSQIAEDEEFYPLLKRNIMAKVEIKRI 140

Query: 117 RNLK-KSNSLP-RALNEKQALTLV----DNVLLHTSHETKWIDAR------NSAILYLLY 164
              K  +  L  + L E++    +    +       +  + + A       ++ I  L+ 
Sbjct: 141 HKPKDTAAKLKGKILEEEELQDFITYIHEGYGQDVENNKQALYAHELNKVRDACIASLIL 200

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV----PLLPSVRKAILEYYDLCPFD 220
             GLR+SE ++L   +I  +   L +  KG+               +  +  Y  L    
Sbjct: 201 NSGLRVSEVVNLNLADIDLNNKMLHVFRKGNNDETFKTPVYFRAQAKDDLEFYLQLRQTR 260

Query: 221 LNL-NIQLPLFRGIRG-----KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
             +   +  LF  +R      + +     Q  I +  +  G P S T H LRHSFAT   
Sbjct: 261 YKVPKKEKALFVALRNGQHEGQRMTKRAIQAMIIKYAKRFGKP-SLTVHKLRHSFATDYY 319

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               D+   +  LGH    TT++Y ++  K     +    D+
Sbjct: 320 LQN-DIYKTKEQLGHASTETTEVYAHLTDKTMSQAIERRADE 360


>gi|83816142|ref|YP_445021.1| integron integrase subfamily protein [Salinibacter ruber DSM 13855]
 gi|83757536|gb|ABC45649.1| integron integrase subfamily [Salinibacter ruber DSM 13855]
          Length = 318

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/216 (26%), Positives = 91/216 (42%), Gaps = 14/216 (6%)

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +    + + + ++     +      K    LP  L+ ++   L D +           
Sbjct: 102 RALIFLYEQVLEIELDDIGPLDRADRPK---RLPTVLSREEVHRLFDAM----------S 148

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAIL 211
              N  I +LLYG GLR+SEAL L  + +    S L ++ G G       +      A  
Sbjct: 149 TGPNRLIAHLLYGSGLRLSEALRLRVKELDVGTSRLHVRDGVGGVSLPDAIAEKYPNAKT 208

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           E+     F      + P     R    +    QR +++      +    T HTLRHSFAT
Sbjct: 209 EWRWQYVFPPTTLSEDPRSGAARRHHRSDSAVQRAVKKAADATDIEKRATCHTLRHSFAT 268

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           HLL +G D+R+IQ +LGH +L TT  Y +V  ++G 
Sbjct: 269 HLLQDGTDVRTIQRLLGHEQLRTTMQYVHVLEQSGD 304


>gi|325955709|ref|YP_004293183.1| integrase/recombinase [Lactobacillus acidophilus 30SC]
 gi|325334689|gb|ADZ08242.1| integrase/recombinase [Lactobacillus acidophilus 30SC]
          Length = 284

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 63/297 (21%), Positives = 117/297 (39%), Gaps = 31/297 (10%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K    ++++L ++ G ++ TL  YE   ++F  F       ++    + Q+  +++  F+
Sbjct: 8   KLIDEFIEDLRLQ-GRAEGTLLEYEMRLKEFAEFF------QLKALALDQVKKSDLTEFM 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            ++ +  +   +++  LS  + F  +   +   +E        +      P+  N K+  
Sbjct: 61  EQKLSNCLKVSTIRGKLSTFRVFCLWAVNKNYLSE-------VIISPQDYPKNTNVKRIR 113

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QG 192
            L D  L    H    +     A  YLL G G R++EA +L  +++     ++ I     
Sbjct: 114 RLSDENLTIFKHYIDTLQPNARAAFYLLIGSGCRVAEAANLKAEDVTLRGKSVYIDIRNA 173

Query: 193 KGDKIRIVPLLP-SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           K    R +P++     K + +Y      D       PLF       L+    Q Y     
Sbjct: 174 KWGSDRNIPIVDADAAKIVWKYRTEVEVD-----NRPLF------RLSKRTLQNYATNFA 222

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +  G+      H LRH+FA  L   G  L ++Q +LGH  L  T  Y      +  D
Sbjct: 223 KSTGINF--YCHLLRHTFAGLLTEKGVPLTTVQYLLGHKSLGMTAHYAQSARVDITD 277


>gi|295692919|ref|YP_003601529.1| integrase/recombinase [Lactobacillus crispatus ST1]
 gi|295031025|emb|CBL50504.1| Integrase/recombinase [Lactobacillus crispatus ST1]
          Length = 203

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/201 (22%), Positives = 85/201 (42%), Gaps = 9/201 (4%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E   +L  L+ ER  S  T+ +Y+ D  +   F      E        ++   +I+ ++ 
Sbjct: 7   ELDQFLSYLQNERHYSAKTVLAYQTDLHEAERFW----HENGGFPGWTKVRERDIQVYLQ 62

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               +K+   S  R +S + SF ++L +RK+        +   +    LP+   + +   
Sbjct: 63  HLAERKLARSSQLRKMSSLHSFYRFLTRRKLVAIDPTQGITLRRGEKKLPQFFYQPELKQ 122

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           + D++        K +  RN A+  L Y  G+R+SE  +LT   +  D  T+ + GKG+K
Sbjct: 123 VFDSL-----KGNKPLTMRNLAMFELFYATGMRVSEVSNLTLNQLDLDLQTILVHGKGNK 177

Query: 197 IRIVPLLPSVRKAILEYYDLC 217
            R V      +K     +  C
Sbjct: 178 DRYVAFDDKTKKYFDCLFRKC 198


>gi|208743365|ref|YP_002267816.1| site-specific tyrosine recombinase XerS [Bacillus cereus]
          Length = 361

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 75/330 (22%), Positives = 127/330 (38%), Gaps = 43/330 (13%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-----------KITIQTIRQLSYTE 70
           ++  E++  LS  TL +Y  +  +FL +L                  + I T+  L   E
Sbjct: 25  IEYAEMKTALSPATLYAYITEFEKFLKWLISNRLAVENGKVVTNICDVPISTLENLPLNE 84

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-------RKITTESNILNMRNLKKSN 123
            R F    + + I  R++ R+ S +KS  KYL +           + + +  +   K+  
Sbjct: 85  ARTFQRYLQGEGIETRAINRTFSALKSLFKYLAQNTENEQGENYISRNVMDKIELHKEKV 144

Query: 124 SLPR--------ALNEKQALTLVDNVLLHTSHETKWIDA-----------RNSAILYLLY 164
                         NEK  +  +  +        K I             R+ AI+ L+ 
Sbjct: 145 DAAARADDVANMIFNEKDDVAFLQFLANDYGEMLKDISPKKYSFFQRDKERDIAIISLIL 204

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-L 223
           G GLR+SE  SLT  +I   Q  +++  KG+K   V    S    + EY  + P   N  
Sbjct: 205 GTGLRVSEVASLTISSINFRQGKVKVTRKGNKRSSVLATRSCLDDVQEYIKVRPSKYNCP 264

Query: 224 NIQLPLFRGI---RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
             +  LF      +   L     Q+   +           + H LRH++AT+      DL
Sbjct: 265 QDEDLLFVTNYKGKYTQLTVRAIQKLCDKYSSA--FDEKRSPHKLRHTYATNHYKENKDL 322

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
             ++  LGH  +  T IYTN+N++   + +
Sbjct: 323 VLLRDQLGHTSVEVTSIYTNINNEKKREAV 352


>gi|149196595|ref|ZP_01873649.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149140275|gb|EDM28674.1| phage integrase [Lentisphaera araneosa HTCC2155]
          Length = 298

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 72/304 (23%), Positives = 130/304 (42%), Gaps = 35/304 (11%)

Query: 16  KERQNWLQNLEIERGL---SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
              Q + + +++E  L   +K T+ +Y    R+    +A           + QL   E++
Sbjct: 3   DSFQKYYRAMQLELKLQAKAKSTVDNYLRALRRVNDLIA---------SPLDQLKEEELK 53

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            + S+         ++K     +  F +Y+ KR+       L +  + +  SLP  L++ 
Sbjct: 54  LYFSELVD-TYSWSTVKMDRCALSFFYQYVLKREWK----WLEIVRIPRVKSLPDILSQD 108

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + L ++ ++             R    L  +Y  GLRISE + +   +I  D+  L ++ 
Sbjct: 109 ETLLILSHLEKA----------RYRTCLTAIYSMGLRISEGVRIQTGDICKDRMRLHVRN 158

Query: 193 -KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIR 248
            KG K R+VPL     + + +Y+ +    L L  +              ++ G  Q   +
Sbjct: 159 SKGYKDRLVPLPQVTYQMLRDYWVMHRNPLLLFPRYAGKSRSNSKTTLHMDKGGVQSAFK 218

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGG----DLRSIQSILGHFRLSTTQIYTNVNSK 304
                 GL    + H+LRHS+ATHL+  G     +LR IQ ILGH   +TT IY++++  
Sbjct: 219 AALADSGLAKQVSVHSLRHSYATHLVEAGVEAGVNLRVIQEILGHSSPATTAIYSHLSKP 278

Query: 305 NGGD 308
              D
Sbjct: 279 VIQD 282


>gi|17227375|ref|NP_478426.1| integrase/recombinase [Nostoc sp. PCC 7120]
 gi|17134774|dbj|BAB77331.1| integrase/recombinase [Nostoc sp. PCC 7120]
          Length = 322

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/318 (19%), Positives = 120/318 (37%), Gaps = 23/318 (7%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYTEE 56
            N LP ++ +    +    L  L  E+  S+ T ++Y+ D + F   +      A +   
Sbjct: 10  NNTLPSVLDWWTQPDV---LAMLLAEKR-SQSTRRAYDRDIQDFFAKMFGVELTAEWVVR 65

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
            + +   + L +  +  + +K   Q + + ++ R LS +++ +   +   +        +
Sbjct: 66  FLALPGAQALGW--VVKYKAKMIEQGLSEATVNRRLSALRALVHKGRLLGVCG----YTL 119

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
            ++K   ++ +  +           +L T   T     R+ A+L LL+   LR  E   L
Sbjct: 120 EDIK-GETVIKYRDTSGITPQEFKQILLTCDRTTAKGVRDYALLRLLWDNALRRGEIAKL 178

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIV--PLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGI 233
              +     S L I GKG   +     L P  R AI  +          +   + L    
Sbjct: 179 KMGDFDRQNSKLLILGKGRGSQREAIDLTPKTRDAICYWLAFRGLASTKDALFVALDPNT 238

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            G PL+     + +R   +  G+    + H +RHS  T  L  G  +R +Q +  H +L 
Sbjct: 239 PGHPLSDTGLAKMVRTRAKKAGITKPLSPHRIRHSSITAALDAGQSVREVQKLSRHTKLE 298

Query: 294 TTQIYTNVNSKNGGDWMM 311
           T  IY   +       + 
Sbjct: 299 TLMIY---DDNRQQHQLK 313


>gi|304312589|ref|YP_003812187.1| Integron integrase [gamma proteobacterium HdN1]
 gi|301798322|emb|CBL46544.1| Integron integrase [gamma proteobacterium HdN1]
          Length = 334

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 65/336 (19%), Positives = 123/336 (36%), Gaps = 64/336 (19%)

Query: 10  VSFELLKERQNWLQNLEI---ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           V  EL      +   L      R LS  T ++Y     +F+ F      + +  + + + 
Sbjct: 11  VPIELPANPTRFTDQLRTFIRARNLSYSTEKTYVHWVLRFIRFHHKRHPKDMADKEVDE- 69

Query: 67  SYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
                  F+S           + K +L+ +    +   K  ++     L     +K + +
Sbjct: 70  -------FLSHLAVSLHCSPATQKVALNALIFLYREFLKLPLSG----LGFSRARKPSRI 118

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P   + ++A+ ++             +   +  ++ L+YG G+RI+E L L  +++    
Sbjct: 119 PTVFSHQEAMDII-----------GRLSGTHQLVVQLIYGTGMRINEVLRLRIKDVDFSM 167

Query: 186 STLRIQ-GKGDKIR----IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-------- 232
             + ++ GKGDK R       L+  +++ I     +   DL+                  
Sbjct: 168 QQIIVRAGKGDKDRVTLLPDRLISPLKQQIDVALAVHRQDLSQGFGDVYMPNALAKKYNA 227

Query: 233 ------------------------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
                                    R   +     Q+ +    +   +      HT RHS
Sbjct: 228 KAPEWQYVFAAAQMSVDPRSENQIRRRHHILDRGVQKAVAHAMQQAKVYKKGNTHTFRHS 287

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           FAT LL  G D+R+IQ +LGH  + TT+IYT+V  +
Sbjct: 288 FATRLLEVGYDIRTIQKLLGHADVKTTEIYTHVVKR 323


>gi|218442606|ref|YP_002380927.1| integrase [Cyanothece sp. PCC 7424]
 gi|218175377|gb|ACK74108.1| integrase family protein [Cyanothece sp. PCC 7424]
          Length = 329

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 61/307 (19%), Positives = 117/307 (38%), Gaps = 27/307 (8%)

Query: 15  LKERQNWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           L   + W   L +E      S  TL++Y    +QF  +       ++    + +L     
Sbjct: 18  LTLEEQWTTFLRVEVASGNASDDTLKTYIAHIKQFFKWCRH---NRLDPLHLNRLQIKNY 74

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPRA 128
           R ++ +R        ++   L+ ++ F        + + +  L ++     +        
Sbjct: 75  RHYLVERM--NYKPATIALKLTTVRRFYDCAISYGLISFNPALGIKPPVEKRDPAERINY 132

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQS 186
           L   +   L    L     +      R   ++ ++   G R  E   L   +I+   +  
Sbjct: 133 LERAEVAQL----LASLPTDDSVASLRERTLIGIMVLQGCRTVEMHRLKMHDIIRQGNNV 188

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRG----KPLNPG 241
            LR+ GK   IR+VPL P +   + +Y        + LN   P+F  +      +PL+  
Sbjct: 189 GLRVSGKRS-IRVVPLTPDLALLLDKYLAARTAAGDRLNDNTPIFISLSNANYGEPLSRR 247

Query: 242 VFQRYIRQLRRYLGLP----LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
             QR +++  +            T H+LRH+  T  L  G +LR +Q +LGH    TT +
Sbjct: 248 SIQRIVQKHLQAFKQTGTNARKLTTHSLRHTAGTLALRTGAELRQVQDMLGHADPRTTAL 307

Query: 298 YTNVNSK 304
           Y ++  +
Sbjct: 308 YAHIADR 314


>gi|325919984|ref|ZP_08181967.1| site-specific recombinase XerD [Xanthomonas gardneri ATCC 19865]
 gi|325923568|ref|ZP_08185208.1| site-specific recombinase XerD [Xanthomonas gardneri ATCC 19865]
 gi|325545956|gb|EGD17170.1| site-specific recombinase XerD [Xanthomonas gardneri ATCC 19865]
 gi|325549539|gb|EGD20410.1| site-specific recombinase XerD [Xanthomonas gardneri ATCC 19865]
          Length = 180

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 68/174 (39%), Gaps = 12/174 (6%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
              LP + + +     + +L     E G+++ TL SY  D      +        +    
Sbjct: 13  AQQLPPLQAAD-ASAIERFLDRFWAENGVARQTLDSYRRDLEGLARWRDGAGGGLLG--- 68

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
              +    +  ++  R   +   RS  R LS +++F     +  + ++     +      
Sbjct: 69  ---VDRAAVFDYLRWRSEARYSPRSTARLLSTLRAFYGLCLREGLRSDDPTALIDPPHLP 125

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
            SLP+AL E Q   L     L        +  R+ A+L L+Y  GLR+SE ++L
Sbjct: 126 RSLPKALTESQIEAL-----LAAPDIDSPLGLRDRAMLELMYAAGLRVSELVNL 174


>gi|299821501|ref|ZP_07053389.1| integrase/recombinase [Listeria grayi DSM 20601]
 gi|299817166|gb|EFI84402.1| integrase/recombinase [Listeria grayi DSM 20601]
          Length = 314

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 56/299 (18%), Positives = 118/299 (39%), Gaps = 17/299 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            ++++++  + + + + T++ Y  D    L       +    +  + Q    +I  +   
Sbjct: 27  IEDFIRSRRL-KNVRETTIKYYL-DIFNVLNRDKVKVDLDKPLSELSQRDLEDIVMY--- 81

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + +   S+   +   K+F  YL  +K    + + +   L++   + + L   +   +
Sbjct: 82  -WKKSLKVTSINSKIKAFKAFYNYLFSKKYIKVNPVADFSLLRQREEIRKTLEANEIKKI 140

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            +        +  +   R+  +  LL   GLRISEA+++   +I DD   + ++ K    
Sbjct: 141 ANYY----KRKETFTAFRDLVLFQLLLDTGLRISEAINIKVPDIHDD-YIVVVETKNLTQ 195

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RIV +  S+++ +  Y  +            LF    G       FQ  +R   R   L 
Sbjct: 196 RIVYISKSMKQKLNSYISIR----GECNHQYLFIIQDGTKYTKYSFQESLRNAGRMCQLR 251

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV--NSKNGGDWMMEIY 314
              + H  R ++A + + +G D  S+ S+LGH  L  T+ Y  +  N       +   Y
Sbjct: 252 KQVSPHVCRRTYAKNAILSGMDAFSLASLLGHSSLEVTKRYVQIWGNDLKKQAKLKRDY 310


>gi|323702858|ref|ZP_08114516.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
 gi|323532116|gb|EGB21997.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
          Length = 358

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 68/309 (22%), Positives = 129/309 (41%), Gaps = 22/309 (7%)

Query: 19  QNWLQNLEIER--GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           Q  L  +E  +  GLS+ T++ Y+ + + FL +L         I T+  ++   +  +++
Sbjct: 54  QTMLSYIEYRKSYGLSRETVEEYKRNFQHFLNYLNVN-----GITTLNLINQHLLLNYVN 108

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQA 134
           +         +  R+LS IK +L+YL  + +T       +   K  K   LP   ++++ 
Sbjct: 109 QL--GFFTHYTRHRNLSVIKGYLRYLYDQGLTETDFSRVIPKDKYIKQPKLPSTYSKEEV 166

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+          +     R+ A++ +    GLR S+  +LT +NI  +++ + +  + 
Sbjct: 167 KALL-----AAIDRSSPKGKRDYAMVLITALLGLRASDVCNLTFENIQWEKNLIVLNQQK 221

Query: 195 DKIRIV-PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            ++RI  PLL  V +AI++Y         L   + L        LN       +    R 
Sbjct: 222 TQVRIELPLLSEVGEAIIDYLKYGRPSSEL-PYIFLHVTSPYDRLNRSTLHSIVCFYLRR 280

Query: 254 LGL----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +          H LRHS A  LL     L  I  +LGH    +T++Y  ++  +    
Sbjct: 281 ADIHYEKQRKHGPHALRHSLAGVLLEKKTPLPVISEVLGHKNTESTRLYLRIDMNSLRQC 340

Query: 310 MMEIYDQTH 318
            +E+   +H
Sbjct: 341 ALEVPPVSH 349


>gi|229579624|ref|YP_002838023.1| integrase family protein [Sulfolobus islandicus Y.G.57.14]
 gi|228010339|gb|ACP46101.1| integrase family protein [Sulfolobus islandicus Y.G.57.14]
          Length = 291

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 57/296 (19%), Positives = 119/296 (40%), Gaps = 58/296 (19%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR------------RTQK 82
           T++ Y    + FL F+          +  R+++  ++  +IS                ++
Sbjct: 31  TIKLYSTAVKDFLDFIN---------KDPRKVTSEDLNKWISNLLNREGKVKGDEVEKRR 81

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
               +++  +  ++ FLK+L        +  +     K      +AL+E Q   +++   
Sbjct: 82  AKSVTIRYYIIAVRRFLKWL--------NVSVKPPIPKVRGKEVKALDESQIQKVLNTCK 133

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVP 201
                        +  I+ LL   GLR +E LS+  +++  + + +R++  K  + R+V 
Sbjct: 134 RTK----------DKLIIRLLLDTGLRANELLSVLVKDVDLENNMIRVRNTKNGEERVVF 183

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
                ++ + +Y      D  L              +      R +++L   + + L   
Sbjct: 184 FTDETKQLLRKYMKGKKLDEKLFD------------ITYDALYRKLKRLGNKVEIELR-- 229

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            H LRH+FAT  L  G ++ ++Q +LGH  + TTQIYT++      D +   Y + 
Sbjct: 230 PHILRHTFATLSLKRGINVITLQKLLGHKDIKTTQIYTHL----VLDDLRNEYLKA 281


>gi|307149944|ref|YP_003890987.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306986744|gb|ADN18622.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 321

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/310 (20%), Positives = 121/310 (39%), Gaps = 20/310 (6%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M  + L       L+    + L  L   +  S+ T  +Y  D R F  ++A    E+ T 
Sbjct: 1   MTSSALVPSYQSALINSEPDVLAQLLAGKR-SRNTQNAYAKDLRDFFYYVA--GVEEPTA 57

Query: 61  QTIRQLSYTE-------IRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
           + +++    +       +  + +     +K+ + ++ R L+ IKS ++   +      + 
Sbjct: 58  EIVKEFLELDQFAALSLVLKYKAHLSNERKLKEATVNRRLAAIKSLVRLGNQLGQCRFTL 117

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
                   K + + R  +           +L           R+ AIL LL+   LR  E
Sbjct: 118 AE-----VKGDKIVRYRDTTGISKEAYRKMLAIPALDTLKGKRDYAILRLLWDNALRRGE 172

Query: 173 ALSLTPQNIMDDQSTLRI--QGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPL 229
                 +++  D  +L I  +GKG + + + L     +AI ++       D+N  + + L
Sbjct: 173 IEQADIKDLDLDGRSLLILGKGKGQQKQSITLSRPTVEAITQWLHARRELDINQPLFIAL 232

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILG 288
            R   G  L      + +  +    G+    + H +RHS  T  L   GGD+R +Q +  
Sbjct: 233 DRSSYGHRLTGTAIYKIVESIATGAGITKKLSPHRIRHSSVTAALDATGGDVRKVQKLSR 292

Query: 289 HFRLSTTQIY 298
           H  L+T  IY
Sbjct: 293 HADLNTLMIY 302


>gi|225419809|ref|ZP_03762112.1| hypothetical protein CLOSTASPAR_06150 [Clostridium asparagiforme
           DSM 15981]
 gi|225041550|gb|EEG51796.1| hypothetical protein CLOSTASPAR_06150 [Clostridium asparagiforme
           DSM 15981]
          Length = 361

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 112/283 (39%), Gaps = 32/283 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR- 79
           +L  + + RG +++T++SY  +   F   L          + I  ++  +IR +++  + 
Sbjct: 83  YLATM-VIRGCTEMTVESYRQEYTTFFHTLK---------KAIPDITTGDIRGYLAHCKL 132

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +   D ++      ++    +L +      + +L +++ K  + +    +++    + D
Sbjct: 133 VRHNKDVTINNKTRMLRGLFTWLTEEDYIDRNPMLRIKDNKVEHRVKEVFSDEHITIIKD 192

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             + H             AI+  L+  G+RISE ++L   +I        + GKG K R 
Sbjct: 193 AAVRHGPRSI--------AIVDFLHRTGVRISEMVALDRSDIDFQDRQCIVYGKGRKERP 244

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR----RY 253
           V         + +Y      +   +    LF GIR     L     +  +R++R    R 
Sbjct: 245 VYFSGDAAVHLRDYL-----ESRTDNNPALFVGIRKPFNRLTDDAVRLILREIRDMDDRL 299

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            G+      H  R  F T LL     L  +  + GH  L+TT+
Sbjct: 300 AGIA--INPHKWRRQFVTELLEKDVPLTLVADLAGHKNLNTTK 340


>gi|134045285|ref|YP_001096771.1| tyrosine recombinase XerC subunit [Methanococcus maripaludis C5]
 gi|132662910|gb|ABO34556.1| tyrosine recombinase XerC subunit [Methanococcus maripaludis C5]
          Length = 291

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 61/294 (20%), Positives = 114/294 (38%), Gaps = 24/294 (8%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
            +    G S  T+ +     R F+ F    T ++I+++ +           I   R  + 
Sbjct: 20  YMAFRSGHSDKTVITNISGIRIFMRFHKNKTFDEISLEDV-----------IEFYRKHES 68

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVDNVL 142
            + +  + LS +  F  +         + +   +  L+KS      L ++Q   L+ NV 
Sbjct: 69  SENTKIQYLSRLTLFYNWGISENYFLRNPVEKFLVTLRKSKKEREYLTKEQTNYLLSNVF 128

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
                     +      L      G+R SE  +L   ++  D+ T+RI GKG K R V +
Sbjct: 129 ----------EYEYRLFLMFFLHTGVRNSEFRNLKIHDVDMDERTIRILGKGRKERYVFI 178

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTT 261
              +   +  +          +    + R      L     F  Y+ ++ +   +    T
Sbjct: 179 DNELYSYLKIWLIQRDSKFPKSDHFFVNRLGNPIRLTHLVSFTDYLNEVSKN-KIGFRIT 237

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            H LRH+FAT  +  G DL+++  ILGH  + TT IY + N ++     + + +
Sbjct: 238 PHILRHTFATRCIDMGMDLKTLSLILGHEDIKTTSIYLHKNKESLKREFLRVMN 291


>gi|325125902|gb|ADY85232.1| Integrase/recombinase, phage integrase family [Lactobacillus
           delbrueckii subsp. bulgaricus 2038]
          Length = 323

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 57/308 (18%), Positives = 117/308 (37%), Gaps = 32/308 (10%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E+ + ELL     +      E G S+ +L  Y     + L         KI    I  ++
Sbjct: 42  ELSNQELLA---KYFAAKRAE-GCSEKSLAYYRATIVKALS--------KIGSNAIEIVT 89

Query: 68  YTEIRAFISKRRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
             ++R +++  +T     + ++      + SF  +L+      +S I  +  ++   ++ 
Sbjct: 90  -DQLRKYLTDYQTAHNSSKVTIDNIRRILSSFFNWLEDEDYIVKSPIRRIHKVRVVKTVK 148

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
              ++++   L D             + R+ A++  L   G+R+ E + L  Q+I   + 
Sbjct: 149 ETYSDEELEKLRDGCD----------NLRDLAMIDFLSTTGMRVGELVLLNRQDINFQER 198

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG--KPLNPGVFQ 244
              + GKG K R+       +  +  Y +        +    LF G++     L     +
Sbjct: 199 ECIVFGKGSKERVTYFDARSKLHLQRYLESRD-----DANEALFVGLKWPHNRLTISGVE 253

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             ++ +   LG+      H  R + AT  +  G  +  +Q +L H R+ TT  Y  V  +
Sbjct: 254 SRLKVVGNRLGISA-VYPHKFRRTLATKAIDKGMPIEQLQRLLEHSRIDTTLHYAMVKQQ 312

Query: 305 NGGDWMME 312
           N  +    
Sbjct: 313 NVKNAHRR 320


>gi|228924524|ref|ZP_04087724.1| Tyrosine recombinase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228835149|gb|EEM80590.1| Tyrosine recombinase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 357

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 67/330 (20%), Positives = 124/330 (37%), Gaps = 37/330 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEI 71
            + +++  E+    S  TL +Y  D R F  +L       F   + I+   +  L   ++
Sbjct: 27  IEEFVEYKELHD-ASPSTLLNYVYDFRVFFNWLLSEQIIEFKPIKDISFSDLENLKKKDV 85

Query: 72  RAFISKRR-TQKIGDRSLKRSLSGIKSFLKY------------------LKKRKITTESN 112
             F+   +  Q + + S+ R +S +KS  KY                  + K +I  +  
Sbjct: 86  ENFMRFLKLQQNMQNSSVNRKISALKSLFKYLTSLSENEDGECYFYRNVMAKIEIHKDKE 145

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID-----ARNSAILYLLYGCG 167
            LN R  +  + +    ++++ L  V         + +         R+ AIL L  G G
Sbjct: 146 TLNARAKRMRSKIFHNDDDQEFLNYVKYEHEKALTKHQLFYFLRDKERDVAILSLFLGSG 205

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           +R+SE   L  ++I   +  + +  KG+K   V + P     + +Y ++         +L
Sbjct: 206 IRVSELADLRMEDINLKERLIDVIRKGNKEDSVWITPIALNDLEKYMEIRDNKYAPGKEL 265

Query: 228 -PLFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             +F         PL+    Q  + +  +  G     + H LRH+ A  L     D   +
Sbjct: 266 QNVFLSKYKHTAQPLSVRAIQDIVEKYTKAFG--KKMSPHKLRHTLANKLYMEEKDSLQV 323

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              LGH    T  +YT +      D +  I
Sbjct: 324 MQQLGHTSQDTALLYTQLGETTIKDSLGRI 353


>gi|99034662|ref|ZP_01314606.1| hypothetical protein Wendoof_01000576 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 191

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 88/171 (51%), Gaps = 13/171 (7%)

Query: 158 AILYLLYGCGLRISEALSLTPQ------NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           AIL +LY  G+R+SE +S+         N  + +  + I+GK  + R +       +++ 
Sbjct: 18  AILDILYSSGMRVSELISMKLCEVSHLINSNNKECYIIIKGKSGRERQILFNEQALQSLR 77

Query: 212 EYYDLCPFDLNLNIQ-LPLFRGIRGK-PLNPGVFQRYIRQLRRYLGLPL-STTAHTLRHS 268
            Y  +    ++   +   LF G +   P+      + +++L R   +     + H +RHS
Sbjct: 78  NYLSVRDNLISKEKESDWLFPGDKPNKPITRQRVGQLMKELARKCNIDENKISPHVVRHS 137

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           FATHLL++G ++  IQ +LGH  LSTTQIYT++ ++   D + +    +HP
Sbjct: 138 FATHLLNSGANIVLIQKVLGHTNLSTTQIYTHIANEKLKDKLAD----SHP 184


>gi|224825788|ref|ZP_03698892.1| integrase family protein [Lutiella nitroferrum 2002]
 gi|224602012|gb|EEG08191.1| integrase family protein [Lutiella nitroferrum 2002]
          Length = 342

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 68/334 (20%), Positives = 124/334 (37%), Gaps = 45/334 (13%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + +L       GL+  ++++Y     ++  +L          +   +++  ++ AF 
Sbjct: 3   RLFEEFLLFKADNDGLADRSVRAYRDILVRYEAWL--------DGRDPLEVNGDQLLAFC 54

Query: 76  S-KRRTQ-KIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEK 132
                 Q K+   S    ++ I    +Y    R +T       +   +K   LPR     
Sbjct: 55  GPYLHKQLKLAPVSRTPYVACIHELYRYLSAVRGLTGRDPSQAVPYPRKPGKLPRVATLD 114

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD------QS 186
            A  L+            +   R++A+L LL GCGLR+S   +L   N+         + 
Sbjct: 115 TAERLM-----WAPDFNTFEGVRDAAMLALLLGCGLRVSGLAALNEGNLTTQVVDGEPRL 169

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKP---- 237
            L+   KG K R++P+       +L  Y   P    ++   P     LF   R +     
Sbjct: 170 ALKPIEKGGKERLIPVPREA-DLLLRVYMEHPDLEGIDRSTPSGDRVLFITTRNRRCPAH 228

Query: 238 --------LNPGVFQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILG 288
                    +       I++  +  G+P      H LRH F T L     DL   Q+++G
Sbjct: 229 EYYGERRRFSTRGVFAMIQRHGKAAGIPEEQLNPHALRHLFGTELAEGDIDLLERQNLMG 288

Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           H    +T IYT++  +     + +  DQ +P   
Sbjct: 289 HKDPKSTAIYTHLAFR----KLTKSVDQANPLAK 318


>gi|326955337|gb|AEA29030.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
          Length = 346

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 62/272 (22%), Positives = 103/272 (37%), Gaps = 20/272 (7%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T ++Y  D   F  +      E    + +    Y    A    R  +     ++ R 
Sbjct: 47  SEHTRRAYAGDVTDFFDWCDQVGLEVFAARRVHLDGYVTALAAPRPRTGRPAAASTVARR 106

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLVDNVLLHTSHETK 150
           L+ +  F  Y     +   S +  +R  +  +  P   L+  +   L+          T 
Sbjct: 107 LAALAGFYDYAADEDLIESSPVTRVRRPRVESDSPSTGLDRDEQRALLAAAAADGPRAT- 165

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRK 208
                  A++ LL   GLRI EALS   +++  ++    LR+  KG +     L     +
Sbjct: 166 -------ALVTLLLHNGLRIDEALSRDVEHLQVERGHRVLRLHRKGGRAATAALAAPTAR 218

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP--LSTTAHTLR 266
           A+  Y       L+     P+F    G+ ++     R IR+L    GL        H+LR
Sbjct: 219 ALDAY-------LDGRETGPIFTTRTGRRMDGPAAWRLIRRLAHTAGLASADRIGPHSLR 271

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           H+F T  L    +LR +Q   GH    TT+ Y
Sbjct: 272 HTFVTTALDAKVELRDVQDAAGHADPRTTRRY 303


>gi|226361765|ref|YP_002779543.1| transposase [Rhodococcus opacus B4]
 gi|226240250|dbj|BAH50598.1| putative transposase [Rhodococcus opacus B4]
          Length = 374

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 72/354 (20%), Positives = 125/354 (35%), Gaps = 74/354 (20%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR- 78
            +L+ + ++ G S  T  +Y  D R    F A   E  I  +  R     E+  ++ +R 
Sbjct: 30  RFLRYV-LDSGRSPNTALAYGYDLRLVFEFFA---EHNIDWRRFRPAHALELLGWLRRRP 85

Query: 79  ---------------RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE-SNILNMR----- 117
                          R + +   S+ R L+ + SF  +    ++ ++ + +   R     
Sbjct: 86  ARRPAQRLGLAAVGPRGRLLAPASVARVLAAVSSFYDWAIVAELVSDQNPMRRRRDIALA 145

Query: 118 -----------------------NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
                                   ++    LPR L+E +   +++++             
Sbjct: 146 MVAERHRPFAGHASRQQPVSRDIRVRIPRRLPRPLSESEVTAVLESM----------TCL 195

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP-----------LL 203
           R+ A++ L+   GLR  E L L   +I   +  + I+ + D  R V            L 
Sbjct: 196 RDLAMVLLMLDGGLRPGEVLGLQLGDIAYGRRRVTIRKRDDHPRGVRGKSRHERVVDLLD 255

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPL---FRGIRGKPLNPGVFQRYIRQLRRYLGL-PLS 259
           P    A+  Y          N  + L     G R  PL+     R   +    LGL  + 
Sbjct: 256 PRTLDAVNRYVLHERPVDAPNPFVFLVGGRGGRRCVPLSYAALVRMFARRLEALGLRTVD 315

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            T H LRH+ AT +   G    ++Q  LGH    +T+IYT V+     D     
Sbjct: 316 KTPHALRHTHATVMWEAGMRELALQRRLGHASPESTRIYTRVSDIQVRDEYAAA 369


>gi|83814313|ref|YP_444939.1| phage integrase family site specific recombinase [Salinibacter
           ruber DSM 13855]
 gi|83755707|gb|ABC43820.1| site-specific recombinase, phage integrase family [Salinibacter
           ruber DSM 13855]
          Length = 297

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 64/296 (21%), Positives = 116/296 (39%), Gaps = 30/296 (10%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           + L+  Q+    LE     S  T+ +Y      F  +       + T   +R     E +
Sbjct: 3   DHLQAFQD--DYLED---KSDETVGTYRRSLNSFEKWFVQQNTFRFTEDGVR-----EYK 52

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNE 131
            ++     + +   S+   L+ ++ F +YL      TE+    ++  ++  +  R  L E
Sbjct: 53  RYL--MEDRDLSQVSVSTYLTALRRFCQYLTDVGELTENPATGVKGNRRPETHSRSVLTE 110

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLR 189
                L          +   ID R+ AI+ L+   GL   E +    ++         LR
Sbjct: 111 SDIEKL-----EAVVDDATQIDKRDHAIISLMLYAGLSEIEIVRADVEDLEHTLMGPVLR 165

Query: 190 IQGKGDKIRIV--PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVF 243
           +QGKG +++    PL P V +A+  Y D      +++ + PLF     +     L     
Sbjct: 166 VQGKGREVKDQEAPLDPPVLEAVEAYLDTRD---DVHPEDPLFVSHGHRSKGKRLQTRSV 222

Query: 244 QRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +  I    +  G+     T H+L H+ A   L++G  L  ++  + H  L TT IY
Sbjct: 223 RSRINGYLKEAGIKRKGVTPHSLTHTAALLWLNDGMPLEEVKERMRHGTLDTTMIY 278


>gi|302670790|ref|YP_003830750.1| tyrosine recombinase XerC1 [Butyrivibrio proteoclasticus B316]
 gi|302395263|gb|ADL34168.1| tyrosine recombinase XerC1 [Butyrivibrio proteoclasticus B316]
          Length = 353

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 64/305 (20%), Positives = 118/305 (38%), Gaps = 22/305 (7%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTE-------EKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           S  T   Y  D R F  +L                +  + Q+   +I  ++         
Sbjct: 46  SARTRLGYAYDLRTFFEYLHNVNPSLSKKDIRDYDVSILNQIEREDIEEYLEYLSLYAKD 105

Query: 85  DRSL-------KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           DR +       KR +S ++S   Y  K +  + +    +   K        L   +  TL
Sbjct: 106 DREITNNEQGKKRKMSALRSMYSYFYKSEQISRNTAELINMPKLHEHEIIRLEPNEVATL 165

Query: 138 VDNVLLHTSHETKWIDAR------NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           +D V          +         + A+L LL G G+R+SE + +   +I  D + LRI 
Sbjct: 166 LDQVEAGEKLTKAQLKYHEKTKLRDVALLTLLLGTGIRVSECVGIDFDDIDFDTNGLRIH 225

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            KG    +V     VR+A+L Y +     +     +  LF  ++ K ++    ++ +++ 
Sbjct: 226 RKGGYNTVVYFPDEVREALLTYINQRKEIIPEEGSENALFLSLQNKRISVRAVEKLVKKY 285

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDW 309
            + +      T H LR +F T+L    GD+  +  +LGH  ++TT+  Y   +  N    
Sbjct: 286 AQNVTTLKKITPHKLRSTFGTNLYQESGDIYLVADVLGHKDVNTTRKHYAAQDDANRRKA 345

Query: 310 MMEIY 314
              ++
Sbjct: 346 AKMVH 350


>gi|241890154|ref|ZP_04777452.1| putative tyrosine recombinase XerD [Gemella haemolysans ATCC 10379]
 gi|241863776|gb|EER68160.1| putative tyrosine recombinase XerD [Gemella haemolysans ATCC 10379]
          Length = 299

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 62/306 (20%), Positives = 127/306 (41%), Gaps = 15/306 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +N+ + L   +  S  T+ SY+ D ++  ++L    E+  + Q    L+   I  +I  
Sbjct: 6   LKNFNEYLLNRKEFSTNTINSYDRDLKKIFLYLE---EKGYSTQDYSWLNEEFISRYIDY 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R ++    +L R++S +  F++YL   K       +++   K+ +         +   +
Sbjct: 63  LREKEYSSATLSRTISTVHIFVEYLWFEKFIPNRVNIDVHIDKEEHQDLVIFTRHEISKI 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D       +    I  R+ AI  L Y  G++ +E ++L  +++      L+ + K    
Sbjct: 123 LDV------NTKNLIGYRDKAIFELSYSIGIKPTECINLELRDVNTTIGYLKYRKKDGY- 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R + L     +AI +Y      +  N+     LF    G+ ++   F +  ++ ++ LGL
Sbjct: 176 RTIALNKESVEAIEKYIVELKKEYPNIKDDSKLFLNHDGEGISRQGFWKIFKKRQQELGL 235

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                    R+S A HLL +      +Q +LG   + + ++Y +    N    M+     
Sbjct: 236 TKELNTMNFRNSLAIHLLEDKVPAEEVQELLGLKNIHSLKLYFSSLEGNKSKRMI----T 291

Query: 317 THPSIT 322
            HP  T
Sbjct: 292 NHPRKT 297


>gi|126661403|ref|ZP_01732464.1| phage integrase [Cyanothece sp. CCY0110]
 gi|126617310|gb|EAZ88118.1| phage integrase [Cyanothece sp. CCY0110]
          Length = 401

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 57/340 (16%), Positives = 117/340 (34%), Gaps = 54/340 (15%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            +   L   +++L++   E      T+++Y C  +QFL +        I   T  QL+  
Sbjct: 16  TATAHLNVFEDFLKHHVGEGSAESDTIRTYRCHIKQFLQWCQNTELNPIEA-TFNQLTR- 73

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLP 126
             R ++  +  Q+  + ++   L+ ++ F   L++      +  + ++     +   +  
Sbjct: 74  -FRHWLIHQ--QQYQNATISLKLTILRRFYDGLREYGYIINNPAIRLKAPTAVRDPAASI 130

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDD 184
             L  ++   L+D        E      R+  ++ L+   G R  +   +T +N+     
Sbjct: 131 NFLENEEMNRLLD----SLPTENTVHALRDRLLISLMVLQGCRTVDLHRVTMENMVKNGK 186

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK------PL 238
              LR+  K     +       +               +    PLF  +         PL
Sbjct: 187 NIGLRVSSKRHTRVVPLTPDLAKLLRRYLRARRKAGELITESTPLFISVAWNNKKIWKPL 246

Query: 239 NPGVFQRYIRQLRRYLGL----------------------------------PLSTTAHT 264
           +   F+R + +    +GL                                  P   + H+
Sbjct: 247 SRRSFRRIVDKYLGVIGLKELPCPKTLKKLTGSQEKSNLPTKAREFSQHKPKPRKLSPHS 306

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           LRH+ AT  L  G  L  +Q +LGH    TT +Y ++  +
Sbjct: 307 LRHTAATLALRAGATLEQVQDLLGHTDPKTTMVYVHIGDR 346


>gi|225871676|ref|YP_002753034.1| integrase/recombinase, phage integrase family [Bacillus cereus
           03BB102]
 gi|225785556|gb|ACO25774.1| integrase/recombinase, phage integrase family [Bacillus cereus
           03BB102]
          Length = 361

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 75/336 (22%), Positives = 129/336 (38%), Gaps = 43/336 (12%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-----------KITIQTIRQLSYTE 70
           ++  E++  LS  TL +Y  +  +FL +L                  + I T+  L   E
Sbjct: 25  IEYTEMKTALSPATLYAYITEFEKFLKWLLSNRLAVENGKVVTNICDVPITTLENLPLNE 84

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-------RKITTESNILNMRNLKKSN 123
            R F    + + I  R++ R+ S +KS  KYL +           + + +  +   K+  
Sbjct: 85  ARTFQRYLQGEGIETRAINRTFSALKSLFKYLAQNTENEQGENYISRNVMEKIELHKEKV 144

Query: 124 SLPR--------ALNEKQALTLVDNVLLHTSHETKWIDA-----------RNSAILYLLY 164
                         NEK  +  +  +        K I             R+ AI+ L+ 
Sbjct: 145 DAAARADDVANMIFNEKDDVAFLQFLANDYGEMLKDISPKKYSFFQRDKERDIAIMSLIL 204

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-L 223
           G GLR+SE  SLT  +I   Q  +++  KG+K   V    S    + EY  + P   N  
Sbjct: 205 GTGLRVSEVASLTISSINFRQGKVKVTRKGNKRSSVLATRSCLDDVQEYIKVRPSKYNCP 264

Query: 224 NIQLPLFRGI---RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
             +  LF      +   L     Q+   +           + H LRH++AT+      DL
Sbjct: 265 QDEDLLFVTNYKGKYTQLTVRAIQKLCDKYSSA--FDEKRSPHKLRHTYATNHYKENKDL 322

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             ++  LGH  +  T IYTN+N++   + +  +  +
Sbjct: 323 VLLRDQLGHTSVEVTSIYTNINNEKKREAVDRLERR 358


>gi|162447445|ref|YP_001620577.1| tyrosine recombinase/integrase [Acholeplasma laidlawii PG-8A]
 gi|161985552|gb|ABX81201.1| tyrosine recombinase/integrase, xerDC family [Acholeplasma
           laidlawii PG-8A]
          Length = 310

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 73/308 (23%), Positives = 128/308 (41%), Gaps = 29/308 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL-SYTEIRAFISKRRTQKIGDRSLKR 90
           S  T QSYE   +QF+ +            T+  L + ++I A+      +K+ + ++K 
Sbjct: 21  SLTTKQSYERILQQFVEY----------ANTLSDLPTRSDIMAYRDHLFKRKLEETTIKY 70

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLVDNVLLHTSHET 149
            L  +++F ++         +    +++ K      RA L+E ++  L+   L   + + 
Sbjct: 71  HLVVVRNFYRWYHTNGH-GANPSEGIKSPKIEKKFKRAHLSESESRQLL--KLAQINSDK 127

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIR--IVPLLPS 205
             I  R+  ++ L+   G+R  E       ++   DD   L + GKG   +   V L P 
Sbjct: 128 NIIKYRDYVMVLLMLTTGMRTVEVERADVSDLNVIDDGEILYVHGKGKTSKSSFVRLSPL 187

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRG----KPLNPGVFQRYIRQLRRYLGLPL-ST 260
           V KAI  Y          +   PLF   +     + +     +R I+ L R +G      
Sbjct: 188 VNKAIETYIMKR-----SDQYEPLFIDHKPKYLGQRMKTRNIRRIIKDLLRDIGFDDDKH 242

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           TAH+LRH+ AT     G +    Q I+ H   +TT+IY +   K+   +   I  +    
Sbjct: 243 TAHSLRHTTATLARQYGANKDDTQKIMRHSDPATTEIYMHAEIKSQHVYEHVIAQKLLNQ 302

Query: 321 ITQKDKKN 328
              +DKKN
Sbjct: 303 EEDEDKKN 310


>gi|86142418|ref|ZP_01060928.1| probable integrase [Leeuwenhoekiella blandensis MED217]
 gi|85831170|gb|EAQ49627.1| probable integrase [Leeuwenhoekiella blandensis MED217]
          Length = 195

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 57/209 (27%), Positives = 98/209 (46%), Gaps = 24/209 (11%)

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           + ++++   LP  L+ ++   L+    L           ++  +L LLYGCGLR  E  +
Sbjct: 2   LPSIERPKKLPVVLSFREVKRLLKAPKL----------LKHRLVLALLYGCGLRCFELCN 51

Query: 176 LTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI- 233
           L  +++  D+  L I+ GKG K R VPL     + +  Y             +  F G  
Sbjct: 52  LQLKDLDFDRMMLHIRQGKGRKDRYVPLSKMQIRGLQTYLR------AEQPSIWCFTGNN 105

Query: 234 ---RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
              +  PL+    +  + + R++ G+    T H+LRHS+ATHLL  G D+ S++ +LGH 
Sbjct: 106 SEGKAVPLSTQGVRWIVSEARKHSGIRKQVTTHSLRHSYATHLLEMGLDIMSVKDLLGHA 165

Query: 291 RLSTTQIYTNVNS---KNGGDWMMEIYDQ 316
            + TT  Y +V     +     + ++Y Q
Sbjct: 166 DIQTTLTYLHVAQLGRQKSFSPLDKLYKQ 194


>gi|255535345|ref|YP_003095716.1| probable integrase [Flavobacteriaceae bacterium 3519-10]
 gi|255341541|gb|ACU07654.1| probable integrase [Flavobacteriaceae bacterium 3519-10]
          Length = 295

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 59/267 (22%), Positives = 116/267 (43%), Gaps = 37/267 (13%)

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSL--KRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            +L   +++ ++ + + +         K ++ G++  LK      +    + L++  + +
Sbjct: 13  TELDPEQVKDYLFELQQRSKTPSQTYFKHTVYGLRFLLK---TEGL--PYSFLHLPAIPQ 67

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              LP  L+ ++   ++ +  L           ++  ++ L+YGCGLR  E  ++  Q++
Sbjct: 68  VKKLPVILSREEIWRMLQSAEL----------LKHKLLIGLIYGCGLRCMEVRNIELQHL 117

Query: 182 MDDQSTLRI-QGKGDKIRIVPLLPSVRKAIL---------EYYDLCPFDLNL---NIQLP 228
             D+  L + QGKG K R VPL   + + +          +Y      + N+   +   P
Sbjct: 118 DFDRKMLHVVQGKGPKDRYVPLSEHLIRGLRTFINIENPNQYLFNGNQNRNIEEIDASTP 177

Query: 229 LFRGIRGK-------PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
           L  G             +    Q  I+ + +  G+      HTLRHS+ATHLL +G  + 
Sbjct: 178 LRTGASPFASKDFDSRYSQRGVQWVIKTISKKAGITKEVHTHTLRHSYATHLLEDGVSII 237

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGD 308
            +Q +LGH R+ +T  Y +  S +  D
Sbjct: 238 MVQKLLGHERIESTMEYLHSLSVHRRD 264


>gi|225017866|ref|ZP_03707058.1| hypothetical protein CLOSTMETH_01800 [Clostridium methylpentosum
           DSM 5476]
 gi|224949378|gb|EEG30587.1| hypothetical protein CLOSTMETH_01800 [Clostridium methylpentosum
           DSM 5476]
          Length = 333

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 60/298 (20%), Positives = 112/298 (37%), Gaps = 35/298 (11%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L      +L         S  T+ +Y    +QF ++LA           I   +  ++ 
Sbjct: 39  DLFARFAQYLD-------ASPRTVDTYARALKQFRLWLATQG--------IGSPTRADVL 83

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNE 131
            +    R Q     + +  ++ I+ F ++ ++  +       +++  K S    + AL  
Sbjct: 84  RYRDSLR-QTRKPATTQLYMAAIRQFFRWTEQEGLYP-DIAAHLKGAKISREHKKDALTP 141

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLR 189
            Q   ++             +  R+ A++ +    GLR  E +     +     + + L 
Sbjct: 142 AQMQAVL-----GALSGHDLMSRRDFALVSVAVTGGLRTVELVRADVGDLRNRGEHTVLY 196

Query: 190 IQGKGDKIR--IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVF 243
           IQGKG   +   V L   V +A+  Y  +         +  LF  +  +     L     
Sbjct: 197 IQGKGQMEKADYVKLPFPVLEAVNAYLTMRG---KTRPEDALFASLSHRNGGGRLTTRSV 253

Query: 244 QRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            R ++   R  G      TAH+LRH+ AT  L  GG L   Q +L H  ++TT +Y +
Sbjct: 254 SRIVKTAFRRAGWDSDRLTAHSLRHTAATLNLLGGGSLEETQQLLRHSDINTTMVYLH 311


>gi|58616534|ref|YP_195663.1| putative integrase [Azoarcus sp. EbN1]
 gi|56315996|emb|CAI10639.1| putative integrase [Aromatoleum aromaticum EbN1]
          Length = 294

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 55/274 (20%), Positives = 105/274 (38%), Gaps = 22/274 (8%)

Query: 7   PEIVSFELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           P           Q +  + L  +R LS  T+ +Y      FL F      +      +  
Sbjct: 4   PAKTPPSFATLVQAYFAEYLTQQRALSPQTIAAYRDAFVLFLEFAQSRLGKSSAAIALAD 63

Query: 66  LSYTEIRAFISKRRTQKIG-DRSLKRSLSGIKSFLKYLKKRKITTESNI---LNMRNLKK 121
           ++   I AF++    Q+    RS    L+ ++SFLK+  +R +++   +   L +   + 
Sbjct: 64  MTPELITAFLNHLEQQRHNCVRSRNARLAALRSFLKFAGRRDVSSLQVVERGLGIPAKRF 123

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              +   L+ ++ L ++D      + +  WI  R+  +  +LY  G R+SE   +   ++
Sbjct: 124 ERPMFGYLSREEMLAVID------APDKTWIGQRDHVLFLMLYNTGARVSEITGVKVGDV 177

Query: 182 MDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           + ++    + + GKG K R VPL  S  KA+  +    P    L  + PL        + 
Sbjct: 178 VLEERAACVHLHGKGRKQRSVPLWRSTVKAVRAWLKQNP---QLEPESPLLPNRNWHAMT 234

Query: 240 PGVFQRYIRQLRRYLGLP------LSTTAHTLRH 267
                  +         P         + H +RH
Sbjct: 235 RTNVALRLALAVHTATQPYPDLAKRHVSPHVIRH 268


>gi|320160972|ref|YP_004174196.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
 gi|319994825|dbj|BAJ63596.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
          Length = 337

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 62/311 (19%), Positives = 126/311 (40%), Gaps = 29/311 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+++ + R  S  T ++Y+     F+  L  +  +      ++    + +  F    +
Sbjct: 22  QYLESVSLSR--SPHTFRTYKNALNAFIQCLIEHDLDP-NATLVKNFDESPLTWFSVYLK 78

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTES-NILNM----RNLKKSNSLPRALNEKQA 134
                  +    L+ +K+F +YL   K+   +   + +    R+ K    LP+   +   
Sbjct: 79  NH--SPATETLYLTAVKNFYEYLAAEKLADINLPRVKLLIRQRSRKPGQRLPQF-PKDYI 135

Query: 135 LTLVDNVLLHTSHET-----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
             L++ +       T     +    R+ A L  L   GLR+ EA +L   ++  ++    
Sbjct: 136 EILLEKMQSFIPDATMDETERIRFLRDRAFLLTLADTGLRVHEACNLRRGDMDWNEGKAL 195

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN----IQLPLF------RGIRGKPLN 239
           I GKG++  IV        A+ EY        + +      LPLF       G + KP+ 
Sbjct: 196 IIGKGNREAIVRFSTRTIHALKEYLTQRAALDSSSGKPLSSLPLFARHDKGSGKKIKPIT 255

Query: 240 PGVFQRYIRQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
               +  ++Q  +      + L  T H+ RH F T +L + G+L+  Q +  H  ++ TQ
Sbjct: 256 TTTGRNIVKQRVKEFLDEEISLEITPHSFRHYFVTRVLVSSGNLKLAQELARHRNIAVTQ 315

Query: 297 IYTNVNSKNGG 307
            Y +++++   
Sbjct: 316 RYAHLSNEELD 326


>gi|294783281|ref|ZP_06748605.1| integrase/recombinase, phage integrase family [Fusobacterium sp.
           1_1_41FAA]
 gi|294480159|gb|EFG27936.1| integrase/recombinase, phage integrase family [Fusobacterium sp.
           1_1_41FAA]
          Length = 346

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 117/295 (39%), Gaps = 34/295 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK----IGD 85
            LS  +L  Y+     F +F+          +   +++  +IR +++  R +     +  
Sbjct: 72  NLSDKSLLYYKNSLELFSLFIK---------KDFLKVTTDDIRLYLAVEREKNQQKAVSI 122

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            +++R L+   SF  +L + +  + + +  ++ +K   +   A  + +   L        
Sbjct: 123 DNIRRILN---SFFSFLNEEEYISNNPVKKIKKVKGQKTEKTAFTQLELEKLRMACENSL 179

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
                       A++ +L    +R +E  ++  ++I  +++ ++I  KG+K  +  +   
Sbjct: 180 E----------KAMMEVLISSAVRATELANIKIRDIDFEKNEIKIIRKGNKEGVAFMSTI 229

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-------LNPGVFQRYIRQLRRYLGLPL 258
              AI +Y           + +      +          +    F+R ++ +     +  
Sbjct: 230 AALAIKKYISERGNYNTPYLWIVDGLMYKCYKNQILGSKIETEGFRRVLKSIATRAKVE- 288

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +   H  R +FAT  L  G D+  IQ +LGH  ++TT IY NV+  +  +    I
Sbjct: 289 NVHPHRFRRTFATMALKKGMDVEEIQQVLGHQNINTTMIYVNVDKSSVKEKYKNI 343


>gi|94264575|ref|ZP_01288360.1| Phage integrase:Phage integrase, N-terminal SAM-like [delta
           proteobacterium MLMS-1]
 gi|93454993|gb|EAT05227.1| Phage integrase:Phage integrase, N-terminal SAM-like [delta
           proteobacterium MLMS-1]
          Length = 420

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 64/291 (21%), Positives = 122/291 (41%), Gaps = 16/291 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF-IS 76
              +L+ + + +  +  TL        QFL +L      + T + ++QL+   +  F +S
Sbjct: 126 LDAYLEWMRVHQHAAPGTLDIRSHCLSQFLQWLGP----QATPEGLQQLTSEAVEEFFLS 181

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLPRALNEKQA 134
             R+     R  +   S +++F ++   +  T +     +  L+     ++PR L ++QA
Sbjct: 182 YSRSMGHAGR--RSMQSALRTFFRFCLHQGYTQKQLDRAVPTLRTYKLATVPRGLTDEQA 239

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-K 193
             ++D +  +++        R+ AI  LLY  G+R  +  +L  ++I      +  +  K
Sbjct: 240 RKVLDGISRNSNA-----GQRDYAICQLLYTYGVRGGQVRALCLEDIDWTNDRILFKALK 294

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
             K  ++PL   V +++L Y          +      R       N       + +  R 
Sbjct: 295 HGKDSLLPLTVEVGQSLLSYLQNARPPCRYSEVFLTVRAPYRPLPNSSTLAVIVDRHIRA 354

Query: 254 LGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            G+      AH  RH FAT +L  G  L+ +  +LGH  L+TT IY  V+ 
Sbjct: 355 AGIDSHAKGAHVFRHGFATRMLQEGHSLKKVADVLGHRHLATTFIYAKVDF 405


>gi|170690854|ref|ZP_02882020.1| integrase family protein [Burkholderia graminis C4D1M]
 gi|170144103|gb|EDT12265.1| integrase family protein [Burkholderia graminis C4D1M]
          Length = 408

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 71/304 (23%), Positives = 124/304 (40%), Gaps = 17/304 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           I+          +++ +  ERG +  T+  ++  T QFL +         T + +  L  
Sbjct: 106 IIVLPFQGHLDRYVKWMRDERGFTPSTVAQWQSRTTQFLQWCVD------TDRRLEDLQP 159

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLP 126
            +I A+  +    + G  S+K  +  ++ +L+Y   + +        +R  +     SLP
Sbjct: 160 DDIDAYFIQ-NASRWGRISMKGVMGALRIYLRYSATQGLCDSRLAAALRTPRVYTQESLP 218

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
            A        ++      T+   K  D RN AIL LL   G+R  E ++L    +     
Sbjct: 219 YAPRWTDVQQIL-----ATTATDKPADIRNRAILMLLSIYGMRRGEVVALRLDQVNWAGR 273

Query: 187 TLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
           TL + + K  + ++ PLLP+V +A+  Y D      +   Q+ L      +PL P     
Sbjct: 274 TLHVFRLKRRQPQVYPLLPTVAEALASYIDTVRPPASA-PQIFLGLHAPHRPLTPQAVFD 332

Query: 246 YIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            +    + LG+       H LRH+ A  L+  G  L+ I   LGH   S T  Y  V+ +
Sbjct: 333 LVNDRFKALGIEVKHRGPHALRHACAARLVDQGLSLKEIGDHLGHHSASATMTYAKVDMR 392

Query: 305 NGGD 308
              +
Sbjct: 393 ALRE 396


>gi|295098993|emb|CBK88082.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87]
          Length = 187

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 87/193 (45%), Gaps = 14/193 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +LQ +      S+ T+ +Y+ D  QF  +L     E   I     +       F+ +
Sbjct: 5   IERFLQYIYRRNSQSEKTVDAYKRDLTQFKEYL-----ESQGITNFEDVDRLTFMNFLME 59

Query: 78  RR----TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            R         + ++ R +S  +SF +YL +      + + +++  K    +P  L   +
Sbjct: 60  LRVLPDGTSAKNSTIARKISTYRSFYRYLNEYIGINANPLSSIKTPKNKRKIPDFLFLSE 119

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
               +D     T  E   ++ R+  +  ++Y CGLR+SE ++L  Q++  +Q  +RI GK
Sbjct: 120 IENFLD-----TYDENDPVEFRDKTMFTMMYACGLRVSELVNLKWQDVDLNQRCVRILGK 174

Query: 194 GDKIRIVPLLPSV 206
           G+K RIVP    +
Sbjct: 175 GNKERIVPFFQRI 187


>gi|315505932|ref|YP_004084819.1| integrase family protein [Micromonospora sp. L5]
 gi|315412551|gb|ADU10668.1| integrase family protein [Micromonospora sp. L5]
          Length = 353

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 70/304 (23%), Positives = 116/304 (38%), Gaps = 12/304 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L      R  S  TL +Y  D       +A   +       +  LS   +RA  + 
Sbjct: 37  IEEFLTA-RATRKPSPHTLAAYRRDLTTVAELVAAAGDASPLRLPVSTLSPKVMRAAFA- 94

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN-EKQALT 136
           R        S+ R+ S   SF  +L    +   + +  +   +     P+ L  E     
Sbjct: 95  RFAGPRAAASVHRAWSTWNSFFTFLVAEGVVPGNPMPAVGRPRTPLPRPKPLRGEDTPEE 154

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKG 194
           L+  V      +      R+ A+L L    GLR+SE L+L   ++   D +  + + GKG
Sbjct: 155 LLAAVARAEGRQRDPWPERDLAVLALALCAGLRLSELLALRVSSVAGRDGERRVDVAGKG 214

Query: 195 DKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            + R VP+   V + +  Y     L     ++    P     +G+ L  G  Q  +    
Sbjct: 215 GRPRTVPIEDGVDRVLAGYLDSRRLRFGSRSVRPDSPFLVDRQGEALRRGGLQYLVESCY 274

Query: 252 RYLGL----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           R  G+    P     H LRH+FAT L  +G     I  +LGH  L+++Q Y  V +    
Sbjct: 275 RRAGIGDRVPRGARLHALRHTFATRLAEDGASAAEIMRLLGHASLASSQTYIEVTAGQQR 334

Query: 308 DWMM 311
             + 
Sbjct: 335 AAVA 338


>gi|149200178|ref|ZP_01877201.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149136715|gb|EDM25145.1| phage integrase [Lentisphaera araneosa HTCC2155]
          Length = 328

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 122/290 (42%), Gaps = 30/290 (10%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G +  T  SY    R+    L            + +++  +++ +  K   +     ++K
Sbjct: 20  GKAHRTRDSYLRALRRINKMLTL---------ELDEITEEDLKKYFLKLL-RTYAVPTVK 69

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
               G+  F KY+  R+     N   +  ++  + LP  L +K+   ++  V        
Sbjct: 70  SDRCGLAFFYKYVLSREF----NWGKIIRIQTVHKLPSVLTQKEIAHVLSYVKR------ 119

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRK 208
                R+   L  +Y  GLR+SEAL + P +I  ++  L I+  KG + R+VPL     +
Sbjct: 120 ----WRHRVCLTAIYSMGLRVSEALKMRPSDICVERKILHIRNSKGCRDRLVPLPDLSLQ 175

Query: 209 AILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            I +++     P  +   I+         K +  G  Q   R      G+    + H LR
Sbjct: 176 MINDFWLSHRSPNYIFPQIRDKSNMVNIDKHMYIGAVQGAFRMAVLESGIMKRVSVHNLR 235

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS---KNGGDWMMEI 313
           HS+ATH++  G  + +IQ ILGH  + TT IY  +     +N  D + ++
Sbjct: 236 HSYATHMMEKGVPIMAIQEILGHRDIKTTMIYARLTELIYENRHDQIRKL 285


>gi|330998384|ref|ZP_08322208.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329568490|gb|EGG50295.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 397

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 57/259 (22%), Positives = 95/259 (36%), Gaps = 27/259 (10%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDR-------SLKRSLSGIKSFLKYLKKRKITTESNIL 114
           T+R ++     AFI+  R   +          +        +  L    + +I  E+ + 
Sbjct: 146 TMRDITRDFCLAFINFLRNIYVSPSGKKLSQFTCVSYFGCFRGALNAAVREEIIAENPVN 205

Query: 115 NM---RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
            +     +K   S    L   +   L+D        +         A L+  Y CGLRIS
Sbjct: 206 RLNTDEKIKMPESKREFLTIDEVKILIDTPCRREDVKG--------AFLFSCY-CGLRIS 256

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           + L L  +N+       RI     K R    LP    A  ++        + ++  P   
Sbjct: 257 DVLVLKWKNVDSSAEQWRINIIMQKTRQPLYLPLSMNA-RKWMPERNGAGDEDLVFPTLP 315

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
                          ++   +  G+    T H  RH+FAT LL+ G DL ++  +LGH  
Sbjct: 316 CEDTC-------NVQLKPWVKAAGITKHVTYHVSRHTFATMLLTLGADLYTVCKLLGHSD 368

Query: 292 LSTTQIYTNVNSKNGGDWM 310
           + TTQIY  + +K   D +
Sbjct: 369 VKTTQIYAKIINKKKEDAI 387


>gi|325001049|ref|ZP_08122161.1| integrase family protein [Pseudonocardia sp. P1]
          Length = 336

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 114/297 (38%), Gaps = 37/297 (12%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT------QKI 83
             S  T ++Y  D R F  +      + + ++ +       I A+  +         +  
Sbjct: 45  RRSAHTRRAYARDIRDFYTWCHQAGLDPLRLRRV------HIDAYAHELAQPQPRTGRPA 98

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNEKQALTLVDNVL 142
            + ++ R LS +     Y    ++   S +  ++  +    S+   L   +   L+    
Sbjct: 99  AESTIARKLSTLAGLYAYGVGEELLDRSPLTGVQRPRGGQDSVSTGLTRDEVAALLSAAA 158

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIV 200
              +            ++ LL   GLRI EALS   +++  ++    LR++ KG +    
Sbjct: 159 ADGARAHA--------LISLLVHNGLRIDEALSRDVEHLQTERGHQVLRLRRKGGRTATA 210

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP--L 258
           PL P V  A+  Y       L      PLF    G+ ++     R IR+L R  GLP   
Sbjct: 211 PLAPPVLHALTVY-------LAGRTSGPLFSTRTGRRVDEPAAWRLIRRLARRAGLPQAD 263

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY-----TNVNSKNGGDWM 310
               H+LRH+F T  L  G  LR +Q   GH    TT+ Y      +  S+ G   +
Sbjct: 264 RINPHSLRHTFVTAALDAGVALRDVQDGAGHSDPRTTRKYDNPRELHQTSEKGPGRL 320


>gi|158340051|ref|YP_001521220.1| phage integrase / plasmid pRiA4b ORF-3-like protein [Acaryochloris
           marina MBIC11017]
 gi|158310292|gb|ABW31907.1| phage integrase / plasmid pRiA4b ORF-3-like protein [Acaryochloris
           marina MBIC11017]
          Length = 654

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 60/293 (20%), Positives = 119/293 (40%), Gaps = 33/293 (11%)

Query: 22  LQNLEIE-----RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           L+ + +E     R +   T ++YE D +Q + +         T +   +++  ++  + +
Sbjct: 36  LRWMRVEEFLRSREIRPNTHKAYERDLKQLMDW---------TPKGWHEITSRDLDRYKT 86

Query: 77  KRRTQKIGD------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
             +T+           ++ RSL+ ++SF K+L  R   T++  L +  LK    LP+  +
Sbjct: 87  YLKTEPNHRGKLRKCATINRSLAALQSFFKWLTVRDYITKNPALLLEKLKSDPLLPQEFS 146

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           + +      + L     +  +   R+ A+L+L+   GLR SE   L   +    +  +R 
Sbjct: 147 QDEV-----DNLYQAICDRGFHSFRDRALLHLI-DHGLRASEIQGLNVGDYDGQRVHIR- 199

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGI----RGKPLNPGVFQR 245
           + K D +  VPLL   R+A  +Y          L  + PLF       +G+ L      +
Sbjct: 200 EAKADSVGSVPLLSKARRAFDQYKQWREQQGEVLEDESPLFVSHSNNSKGQRLQYWGIYK 259

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             + +     +  +   H  RH+ AT L+    D    + +  H    +   Y
Sbjct: 260 IFKAIADIAEVE-NAHPHRGRHTLATRLVMKDMDSILARKVTRHKSEQSFVRY 311


>gi|310829015|ref|YP_003961372.1| integrase family protein [Eubacterium limosum KIST612]
 gi|308740749|gb|ADO38409.1| integrase family protein [Eubacterium limosum KIST612]
          Length = 408

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 62/327 (18%), Positives = 132/327 (40%), Gaps = 46/327 (14%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           L +  + WL+         K T++  SY      +   +  +   ++    +  L    I
Sbjct: 98  LAEWLRKWLE------SYKKYTIKQSSYTR----YSNVVNRHLVPRLGHCELENLKPDAI 147

Query: 72  RAFI-SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           + +I +     KI   +++  +  + + LK  +K  +  ++   ++   K+    P  L+
Sbjct: 148 QDYIKATLEENKIAVSTVRGHIVILSAALKQAQKEGLIHKNPCDDIILPKRPIKKPVFLD 207

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            K+A  L + VL ++    K         +      G+R+ E  +L  +++  D+  ++I
Sbjct: 208 VKEAQKL-ETVLKNSRDHKKSTA------VLFALKTGIRLGELAALRWKDVDFDEQVIQI 260

Query: 191 Q-----------------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           +                             R +P+ P + + + +YY+      N + + 
Sbjct: 261 RDSVQRVKNSEKSGMKTKMVFEGTKSYSSNRTIPMNPEIHELLYQYYETMKHRENFS-ET 319

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
            +F   +   ++P V+Q Y R++ +  G+      H LRH+FATH  S    +  +  IL
Sbjct: 320 FVFTNRKNSFIDPRVYQLYFRRILKKAGI-RHVNFHALRHTFATHAASKNMQISVLSRIL 378

Query: 288 GHFRLS-TTQIYTNVNSKNGGDWMMEI 313
           GH  +  T Q+Y +V S      M+++
Sbjct: 379 GHSNVGLTLQLYVHVLSGQDQQEMLKL 405


>gi|331697264|ref|YP_004333503.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326951953|gb|AEA25650.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
          Length = 331

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 68/316 (21%), Positives = 123/316 (38%), Gaps = 52/316 (16%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             ++L  +   RG    TL +   D + F   +          +    +   +I AFI+ 
Sbjct: 8   LDDYLAFVAS-RGR-PNTLLATAYDLKVFFTVVR---------KEPAAVVTADIFAFITA 56

Query: 78  RR--------------TQKIGDRSLKRSLSGIKSFLKYLKKRK--ITTESNI-------- 113
           +R                 +  R++KR L+ +     YL  R       + +        
Sbjct: 57  QRAPRRGVKVVRLEDGEAGLSARTIKRRLASVSGLFGYLMTRDDVAVDRNPVPSGLAGRR 116

Query: 114 ----LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
                    L+   +LPR L   +   ++   +L+T          + A++  +   GLR
Sbjct: 117 QGATRGAPLLRTPRTLPRVLGPDEVDAVLR--VLNTDR--------DRAMVLAMLLGGLR 166

Query: 170 ISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
             E L+L   ++   +  + I +GKG   R+VP+      A+ EY D     ++ +    
Sbjct: 167 RCEVLALRLPDLSPGERRVFIAEGKGGHQRLVPVSAQFFAAVGEYLDRERPAVDHDRLFV 226

Query: 229 LFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           + RG  RG+PL        +   R   GLP   T H LRH+  T L   G  L ++Q+  
Sbjct: 227 VLRGPTRGRPLTAAGLDEIVHGARWRAGLPK-LTCHQLRHTCLTRLREAGMALEAVQAQA 285

Query: 288 GHFRLSTTQIYTNVNS 303
           GH  + +T++Y ++ +
Sbjct: 286 GHRSIESTRVYLHLAN 301


>gi|229082797|ref|ZP_04215228.1| Tyrosine recombinase [Bacillus cereus Rock4-2]
 gi|228700494|gb|EEL53049.1| Tyrosine recombinase [Bacillus cereus Rock4-2]
          Length = 373

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 67/330 (20%), Positives = 124/330 (37%), Gaps = 37/330 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEI 71
            + +++  E+    S  TL +Y  D R F  +L           + I+   +  L   ++
Sbjct: 42  IEEFVEYKELHD-ASPSTLLNYVYDFRVFFNWLLSEQIIELKPIKDISFSDLENLKKKDV 100

Query: 72  RAFISKRR-TQKIGDRSLKRSLSGIKSFLKY------------------LKKRKITTESN 112
             FI   +  Q + + S+ R +S +KS  KY                  + K +I  +  
Sbjct: 101 ENFIRFLKLQQNMQNSSVNRKISALKSLFKYLTSLSENEDGECYFYRNVMAKIEIHKDKE 160

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-----RNSAILYLLYGCG 167
            LN R  +  + +    ++++ L  V      +  + +         R+ AIL L  G G
Sbjct: 161 TLNARAKRMRSKIFHNDDDQEFLNYVKYEHEKSLTKHQLFYFLRDKDRDVAILSLFLGSG 220

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           +R+SE   L  ++I   +  + +  KG+K   V + P     + +Y ++         +L
Sbjct: 221 IRVSELADLRIEDINLKERLIDVIRKGNKEDSVWITPIALNDLEKYIEIRDNKYAPGKEL 280

Query: 228 P-LFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             +F         PL+    Q  + +  +  G     + H LRH+ A  L     D   +
Sbjct: 281 KNVFLSKYKHTAQPLSVRAIQDIVEKYTKAYG--KRMSPHKLRHTLANKLYMEEKDSLQV 338

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              LGH    T  +YT +      D +  I
Sbjct: 339 MQQLGHTSQDTALLYTQLGETTIKDSLGRI 368


>gi|163943257|ref|YP_001642487.1| site-specific tyrosine recombinase XerS [Bacillus
           weihenstephanensis KBAB4]
 gi|163865454|gb|ABY46512.1| integrase family protein [Bacillus weihenstephanensis KBAB4]
          Length = 357

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 66/330 (20%), Positives = 125/330 (37%), Gaps = 37/330 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEI 71
            + +++  E+    S  TL +Y  D R F  +L       F   + I+   +  L   ++
Sbjct: 27  IEEFVEYKELHD-ASPSTLLNYVYDFRVFFNWLLSEQIIEFKPIKDISFSDLENLKKKDV 85

Query: 72  RAFISKRR-TQKIGDRSLKRSLSGIKSFLKY------------------LKKRKITTESN 112
             F+   +  Q + + S+ R +S +KS  KY                  + K +I  +  
Sbjct: 86  ENFMRFLKLQQNMQNSSVNRKISALKSLFKYLTSLSENDDGECYFYRNVMAKIEIHKDKE 145

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-----RNSAILYLLYGCG 167
            LN R  +  + +    ++++ L  +      +  + +         R+ AIL L  G G
Sbjct: 146 TLNARAKRMRSKIFHNDDDQEFLNYIKYEHEKSLTKHQLFYFLRDKDRDVAILSLFLGSG 205

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           +R+SE   L  ++I   +  + +  KG+K   V + P     + +Y ++         +L
Sbjct: 206 IRVSELADLRMEDINLKERLIDVIRKGNKEDSVWITPIALNDLEKYMEIRDKKYAPGKEL 265

Query: 228 P-LFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             +F         PL+    Q  + +  +  G     + H LRH+ A  L     D   +
Sbjct: 266 KNVFLSKYKHTAQPLSVRAIQDIVEKYTKAFG--KRMSPHKLRHTLANKLYMEEKDSLQV 323

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              LGH    T  +YT +      D +  I
Sbjct: 324 MQQLGHTSQDTALLYTQLGETTIKDSLGRI 353


>gi|317484015|ref|ZP_07942950.1| phage integrase [Bilophila wadsworthia 3_1_6]
 gi|316924742|gb|EFV45893.1| phage integrase [Bilophila wadsworthia 3_1_6]
          Length = 311

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 109/273 (39%), Gaps = 21/273 (7%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  T++ Y         +           ++  QL   +I A++     + +   S   +
Sbjct: 37  STKTIELYALYVIGLFNYAK---------KSFNQLKAWDIDAYLRHLTNKGLKPSSRNTA 87

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNEKQALTLVDNVLLHTSHET 149
            + ++SF ++L    + T +    ++  +      LP  L+       ++   L    E 
Sbjct: 88  AATLRSFFRHLVDSGVCTVNPAAFLKRKRNDGKGSLPGHLSHSLGRDELER--LFAGMEE 145

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVR 207
                R+  +  +L+  GLR  EA+SL   N+++   +  L + GKG K R V L    +
Sbjct: 146 VGAPFRDIVLFRVLFMTGLRAEEAVSLKWMNVINWQGRWYLDVLGKGSKARRVYLPQKAQ 205

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGK--PLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            A+ E         +   + P+F  +R +  P++       +++    +      + H  
Sbjct: 206 AALEELR----RHTSPRPEYPIFENLRHRGRPISRHGLYALVKKWSSLVISRGDVSPHWF 261

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           RHS  T L S G  L SIQ++ GH  + TT  Y
Sbjct: 262 RHSCFTQLASRGARLESIQALAGHANIQTTMHY 294


>gi|242310752|ref|ZP_04809907.1| integrase-recombinase protein xercd family protein [Helicobacter
           pullorum MIT 98-5489]
 gi|239523150|gb|EEQ63016.1| integrase-recombinase protein xercd family protein [Helicobacter
           pullorum MIT 98-5489]
          Length = 353

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 61/282 (21%), Positives = 116/282 (41%), Gaps = 17/282 (6%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y     +   +L +     + + +++++    ++ F++   T  + D + K     +
Sbjct: 73  INTYFTPLMKLYEYLNY-----LGLASLKEVDEEMLKEFLT-IHTSSLSDATKKNYRIAL 126

Query: 96  KSFLKYLKKRKITTESNILNMR---------NLKKSNSLPRALNEKQALTLVDNVLLHTS 146
            +F  ++ K+    +S     R           K    LP  +NE++    + N +    
Sbjct: 127 INFFGFIDKQNEDDDSTSYIFRIELKNWGGLRGKSGQKLPSYMNEEEVQRFL-NGIETYP 185

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
            + + + ARN  +L  +   G+R+ EAL+L  ++IM D     IQ KG   +   ++   
Sbjct: 186 FKHQDLGARNRLLLKTIIYTGIRVGEALNLKIKDIMLDGEFYVIQVKGKGNKPRVVMIKA 245

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTL 265
           +    ++               LF   + K L      R + Q+    G+      AH L
Sbjct: 246 KNIHSDFGAWINSRPLEVENELLFCNHKAKKLTQAYVSRIVEQVLLTNGIRKEKNGAHML 305

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           RHSFAT L     DL  +Q  LGH  L T++IYT+ + +   
Sbjct: 306 RHSFATLLYQKSQDLVLVQEALGHASLDTSRIYTHFDKQKLK 347


>gi|322435609|ref|YP_004217821.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321163336|gb|ADW69041.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 414

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 116/293 (39%), Gaps = 15/293 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   L + RGL+  T + Y      FL +            ++  +S +++  FI  
Sbjct: 123 VRGFAHYLSVVRGLAPETTRIYRTRVSHFLEWALDRR------ASLSVISLSDVDDFILM 176

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +R      RS+      I+ F +Y ++R        LN+R       +PR L+  +  T 
Sbjct: 177 KRASGYLPRSIVSFCGAIRMFFRYAEERGWNNSHIPLNLRGP----HIPRYLSAPKGPTW 232

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDK 196
            D   L  +     ++ R +AILYL    GLR SE + L   +      T  +   K  +
Sbjct: 233 KDVRRLINNKTETPVELRATAILYLCSIYGLRSSEVVGLRLSDFNWVSETFVVHRAKRGR 292

Query: 197 IRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           ++  P+   V +AIL Y     P  +  N+ + L    R                 + LG
Sbjct: 293 VQQFPIQFEVGEAILGYLQRGRPQCVCRNVFVTLRPPYRTVRAT--TLWGIAADRMKKLG 350

Query: 256 LP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +   +   H LRHS AT LL  G  L+ I   LGH  + +  IY   + K+  
Sbjct: 351 ITSENYGGHALRHSCATELLRRGSSLKDIADFLGHRDMRSVSIYAKYDLKSLR 403


>gi|1906652|gb|AAC77499.1| DNA integrase [Klebsiella oxytoca]
          Length = 284

 Score =  135 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 61/303 (20%), Positives = 115/303 (37%), Gaps = 64/303 (21%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVNWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEXVRIL-----------GFLEGXHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVRXGKGSKDRALMLPXSLAPSLREQLSRARAWWLKDXAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281

Query: 268 SFA 270
           SFA
Sbjct: 282 SFA 284


>gi|260435817|ref|ZP_05789787.1| site-specific recombinase, phage integrase family [Synechococcus
           sp. WH 8109]
 gi|260413691|gb|EEX06987.1| site-specific recombinase, phage integrase family [Synechococcus
           sp. WH 8109]
          Length = 318

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 67/304 (22%), Positives = 127/304 (41%), Gaps = 34/304 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L      R  S  T++ Y+ + R+F  +     +       +R+++    + ++S+
Sbjct: 30  IKRFLTQCS--RSGSSETVRGYKREIREFTRW----RDRNHPHLHLREINAAFCQDWVSQ 83

Query: 78  RRTQ----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-RNLKKSNSL---PRA- 128
            R Q     +  R+  R ++ I S  ++       + S +  + RN   + SL   P+  
Sbjct: 84  LREQVDAGLMKPRTFNRRIAAISSLYRWAS---EASRSPVTGVPRNPVPTRSLLQAPKTT 140

Query: 129 --LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDD 184
             ++E+   TL+   ++  +  T     R+ A++   Y  G R+SE   +  ++I  +DD
Sbjct: 141 RGISEEAVATLL--AVIRQAFSTDRNSRRDYALIKGSYLLGCRVSEIAVIRWKDIEALDD 198

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVF 243
              + + GKG K R V +  +      E           + +  +F   RG+  L     
Sbjct: 199 GGQIHLFGKGSKRRTVRVSAATLDLFQE-------LGRGDAEAFVFPSPRGEGHLTRQAI 251

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
               R+  R  G       H LRHS ATH +  G D+ ++Q+ LGH   +TT  Y   N 
Sbjct: 252 GDVCRKWGRAAG--FHVHPHQLRHSHATHAVQRGVDVFTLQATLGHSSSATTGHYVASNP 309

Query: 304 KNGG 307
           ++  
Sbjct: 310 RDSS 313


>gi|218848058|ref|YP_002454802.1| integrase/recombinase, phage integrase family protein [Bacillus
           cereus G9842]
 gi|218546189|gb|ACK98582.1| integrase/recombinase, phage integrase family protein [Bacillus
           cereus G9842]
          Length = 361

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 73/355 (20%), Positives = 136/355 (38%), Gaps = 54/355 (15%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE------ 56
            NN+P  V           ++ LE++  LS  TL +Y  +  +F  ++            
Sbjct: 17  KNNMPWYV-----------IEYLEMKTALSPATLYAYITEFEKFFKWIILKRLAVVNGNV 65

Query: 57  -----KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111
                 I I+T++ L   ++  F    + + I  R++ R+ S +KS  KYL +       
Sbjct: 66  VTNITDIPIETLQTLPLNDVNRFHMYLQGEGIETRAINRTFSALKSLFKYLAQNSEDEHG 125

Query: 112 NILNMRNLKKSNSLPR-----ALNEKQALTLVDNVLLHTSHETKWIDAR----------- 155
                RN+ +   L +     A    +   ++ N     +     I+             
Sbjct: 126 KSYLSRNVMEKIELHKEKVDAAARADEVANIIFNDNEDVAFLRFLINDYATILKETSTRK 185

Query: 156 ----------NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
                     + A++ L+ G GLR+SE  SLT  +I   Q T+++  KG+K   +    S
Sbjct: 186 YNYFLRDKERDIALISLILGTGLRVSELASLTLSSINFRQGTIKVTRKGNKKSSILATKS 245

Query: 206 VRKAILEYYDLCPFD-LNLNIQLPLFRGI---RGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
               + EY  +     +    +  LF      +   L+    Q  + +           +
Sbjct: 246 CLDDVQEYMKVRLEKYMCPPEEDILFVTRYQGKYTQLSVRAIQNLVEKYSSA--FDEKRS 303

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            H LRH++AT+      DL  ++  LGH  +  T IYTN+N++   + +  +  +
Sbjct: 304 PHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAIDRLEKR 358


>gi|145301320|ref|YP_001144160.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142856097|gb|ABO92412.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 315

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 55/284 (19%), Positives = 116/284 (40%), Gaps = 16/284 (5%)

Query: 40  ECDTRQFLIFLAFYTE-EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSF 98
                 FL  +A     + +       +    ++A I           ++   L+ +K  
Sbjct: 38  RQTMGSFLNIVARMIGFQNLRDCAWESIRRHHVQAVIQMLSDSDRAPATINTYLAALKGV 97

Query: 99  LKYLKKRKITTESNILNMRNLK--KSNSLP--RALNEKQALTLVDNVLLHTSHETKWIDA 154
                  K     +  +++ ++  + + LP  RAL + +   L         ++      
Sbjct: 98  ALEAWTMKQIDTDSYQHIKQVRSVRGSRLPNGRALEKHEVRALYFTC----ENDRSSKGL 153

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R++AIL +L GCGLR SE ++L  + ++     LR+ GKG+K RI  +     + ++ + 
Sbjct: 154 RDAAILAVLVGCGLRRSEVVALDMECVITRDQALRVLGKGNKERIAYVPDGAWQRLMRWV 213

Query: 215 DLCPFDLNLNIQLPL--FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +    +   ++   +  F  +  + +        +   R   GL      H LR +FA+ 
Sbjct: 214 EEVRGEQPGSLFQRIRRFDDVTAERMTDQAIYHILETRRIEAGLEK-FAPHDLRRTFASA 272

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +L NG D+ +++  +GH  ++TTQ Y     + G + + +   +
Sbjct: 273 MLDNGEDIITVKDAMGHASVTTTQKY----DRRGDERLKQASRR 312


>gi|332139698|ref|YP_004425436.1| site-specific recombinase, phage integrase family protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549720|gb|AEA96438.1| site-specific recombinase, phage integrase family protein
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 297

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 64/291 (21%), Positives = 122/291 (41%), Gaps = 20/291 (6%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITI-QTIRQLSYTEIRAFISKRRTQKIGDRSL 88
            L+  + +S           + +  EE+      I     T I+   +K  TQ    RS+
Sbjct: 13  RLAPNSQRSIASQLNSIADMMGWTDEEREDKYHHIDFQQATYIK---TKLITQGWSARSI 69

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKK---SNSLPRALNEKQALTLVDNVLLHT 145
            R++  I+S +K      +  E   + +R + K        + L+ +Q   L    L+  
Sbjct: 70  NRAMIAIRSIVKIAVLSGLVPEMQSIQLRAISKVNHGKHDGKPLSTEQVNKL----LIKL 125

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
             +   +  RN A++  L G GLR SE ++L  ++ ++  + +  +GKG+K R V L   
Sbjct: 126 QRDKSVLGIRNYALISTLLGTGLRRSELVALLVEDFIEGTALIVRKGKGNKSRTVHLPAW 185

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRG---IRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            + A+ ++  L     N ++ + + +G        L+        ++    +G+    + 
Sbjct: 186 TQLALNQWLTLRS-KSNGHLFVRVAKGGNIKHNTALSSCSIYSLTKKSLASIGIE-GVSP 243

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           H LR +F T LL    D+ +++ + GH  +STT +Y     K     M E 
Sbjct: 244 HDLRRTFITRLLEQNVDINTVRQMAGHEDISTTIMY----DKRDEKVMKEA 290


>gi|228911726|ref|ZP_04075500.1| Tyrosine recombinase [Bacillus thuringiensis IBL 200]
 gi|228847955|gb|EEM92835.1| Tyrosine recombinase [Bacillus thuringiensis IBL 200]
          Length = 373

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 66/330 (20%), Positives = 125/330 (37%), Gaps = 37/330 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEI 71
            + +++  E+    S  TL +Y  D R F  +L       F   + I+   +  L   ++
Sbjct: 42  IEEFVEYKELHD-ASPSTLLNYVYDFRVFFNWLLSEQIIEFKPIKDISFSDLENLKKKDV 100

Query: 72  RAFISKRR-TQKIGDRSLKRSLSGIKSFLKY------------------LKKRKITTESN 112
             F+   +  Q + + S+ R +S +KS  KY                  + K +I  +  
Sbjct: 101 ENFMRFLKLQQNMQNSSVNRKISALKSLFKYLTSLSENDEGECYFYRNVMAKIEIHKDKE 160

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-----RNSAILYLLYGCG 167
            LN R  +  + +    ++++ L  V      +  + +         R+ AIL L  G G
Sbjct: 161 TLNARAKRMRSKIFHNDDDQEFLNYVKYEHEKSLTKHQLFYFLRDKDRDVAILSLFLGSG 220

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           +R+SE   L  ++I   +  + +  KG+K   V + P     + +Y ++         +L
Sbjct: 221 IRVSELADLRMEDINLKERLIDVIRKGNKEDSVWITPIALNDLEKYMEIRDNKYAPGKEL 280

Query: 228 P-LFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             +F         PL+    Q  + +  +  G     + H LRH+ A  L     D   +
Sbjct: 281 KNVFLSKYKHTAQPLSVRAIQDIVEKYTKAYG--KRMSPHKLRHTLANKLYMEEKDSLQV 338

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              LGH    T  +YT +      D +  +
Sbjct: 339 MQQLGHTSQDTALLYTQLGETTIKDSLGRL 368


>gi|118474094|ref|YP_892018.1| phage integrase family site specific recombinase [Campylobacter
           fetus subsp. fetus 82-40]
 gi|118413320|gb|ABK81740.1| site-specific recombinase, phage integrase family [Campylobacter
           fetus subsp. fetus 82-40]
          Length = 354

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 72/284 (25%), Positives = 126/284 (44%), Gaps = 26/284 (9%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y    ++    L FY      + ++  +    I   ++   T  + D S K      
Sbjct: 73  INTYFNPLKKIYEVLKFYE-----LTSLAVIDEELISEVLAS-ITGSLSDASKKNYRIAA 126

Query: 96  KSFLKYLKKRKITT-ESNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTS 146
            +F +++ K+     +++I ++  LK        K   LP  +NE++    ++ +     
Sbjct: 127 INFFEFIGKQNEEDGKAHIFDIE-LKNWGGVSGNKGQKLPEFMNEEEVKRFLNAID---E 182

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLP 204
            + K    RN  I+  +   G+R+SEAL+L  ++I    D   LRI+GKG+K RIV +  
Sbjct: 183 TDFKMNSNRNKLIIKTIVFTGIRVSEALNLKRKDISEDGDLYILRIRGKGNKYRIVMIKK 242

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AH 263
            +    L+   +      +N +  LF    G+ L      R + Q+    G+      AH
Sbjct: 243 HLIDEHLQNIVINY----INSEGYLFVNRNGEKLTQAYVSRIVEQILFGAGIRKEKNGAH 298

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            LRH+FAT L     DL  +Q  LGH  L+T++IYT+ +S    
Sbjct: 299 MLRHTFATMLYKKQKDLVLVQEALGHASLNTSRIYTHFDSDKLK 342


>gi|119716408|ref|YP_923373.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119537069|gb|ABL81686.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 303

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 68/282 (24%), Positives = 110/282 (39%), Gaps = 30/282 (10%)

Query: 23  QNLEIERGLSK-LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT- 80
             L   +G S+  T    E D R +L +      + +  Q         +  F+   +  
Sbjct: 23  AYLARFKGQSRIHT----ESDLRSYLGWCGRQGLDPLAAQ------RPHVELFLRWMQEV 72

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVD 139
            +    ++ R LS +  F +      +   S    +R  + S   P   L+  Q   ++ 
Sbjct: 73  GRYKPSTVSRRLSVVAGFYRTCVIDGLLKHSPAEYVRRPRVSTESPTLGLSHLQLEAML- 131

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQGKGDKI 197
                 +   K  +  + A++ +L   GLRI EA     +    +     LR+ GKGDKI
Sbjct: 132 ------TAGRKSANINDFALVTMLGLLGLRIFEATGANVEALEEVHGHRVLRVWGKGDKI 185

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL- 256
            +VPL P+V +AI          ++     P+ R   G  ++     R +R L R  G+ 
Sbjct: 186 ALVPLPPAVGRAIE-------RAVDGRTGGPILRSRTGNRMDRHCATRRLRALARVAGIA 238

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                 H LRH+F T +L  G DLR +Q    H    TT  Y
Sbjct: 239 TDRMHPHMLRHTFVTTMLDAGVDLRDVQIAARHADPRTTMRY 280


>gi|254885280|ref|ZP_05257990.1| phage integrase [Bacteroides sp. 4_3_47FAA]
 gi|254838073|gb|EET18382.1| phage integrase [Bacteroides sp. 4_3_47FAA]
          Length = 534

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 121/294 (41%), Gaps = 16/294 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +LQ+L   RG S  TL S       F   +     EK        ++  +I   I  
Sbjct: 244 IEKYLQDLRY-RGYSYATLTSSLRSLHYFYDTIGKQNTEKP-------ITLADIDKCIEM 295

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQAL 135
             +      + K  ++ I+S+L Y  ++          +   +  K  +LP  ++     
Sbjct: 296 YTSCHTNRHTNKAYMARIRSYLHYATEQGWCQPGVCEAVVLPRIYKEENLPSFMSWNMVQ 355

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KG 194
            ++  +        +     N  ++ LL   GLR SE  +L   +I   +  + IQ  KG
Sbjct: 356 AILQRMKNAKGKSARR----NYTVVLLLATYGLRCSEVANLKISDIDWRKEQIHIQHAKG 411

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K +  PLL SV +AI+EY      +   N  L        + +        +R+    +
Sbjct: 412 GKSQTFPLLHSVGEAIIEYLRFERRNDLYNDSLFFCAKAPFRTITCHAIHDIVRKELHDV 471

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            +      H+LRHS+AT L++NG  ++ +  +LGH  + +T+IY  V+ ++  +
Sbjct: 472 SI-KHKGPHSLRHSYATFLINNGQTMKEVGDLLGHKSIDSTRIYAKVDFQSLRE 524


>gi|257451607|ref|ZP_05616906.1| integrase/recombinase, phage integrase family protein
           [Fusobacterium sp. 3_1_5R]
          Length = 346

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 53/299 (17%), Positives = 120/299 (40%), Gaps = 40/299 (13%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR--- 86
            LS+ +L+ Y+ +  +F         + +  +    ++  ++R +I+   ++    +   
Sbjct: 75  NLSENSLKVYKDNLERF---------DSVIKKNFLDVTTEDVRFYIATVISKNSSVKETY 125

Query: 87  --SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALTLVDNVL 142
             +++R L   K+F ++L    +   + +  ++ ++   S  LP   +  +   L +   
Sbjct: 126 LDNIRRFL---KTFFQFLVDEGLIKTNPVTRIKPIRGNTSEKLP--FSNMEIEKLRNAC- 179

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
                          A++ +L     R  E   +   +I  ++ ++R  GKG K+    L
Sbjct: 180 ---------SSCLEKAVIEILISTAFRRQELAEIKLSDIDFEKGSIRTIGKGKKLGYGFL 230

Query: 203 LPSVRKAILEYYDLCPFD----LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
                 A++EY +         L +  +   FR   G+P +       I+++ +  G+  
Sbjct: 231 NAKALLALIEYIEKERESKSVFLFIRGKNKRFREKAGEPYDASSLYALIKKIGKKAGVT- 289

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
               H  R + AT  L  G  L  ++ +L H  + TT IYT +N     D + + +++ 
Sbjct: 290 HVHPHRFRRTAATKALDRGLGLEDVKELLRHEDIKTTLIYTTLN----KDRLKDKHNRF 344


>gi|296126706|ref|YP_003633958.1| integrase family protein [Brachyspira murdochii DSM 12563]
 gi|296018522|gb|ADG71759.1| integrase family protein [Brachyspira murdochii DSM 12563]
          Length = 374

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 74/317 (23%), Positives = 128/317 (40%), Gaps = 23/317 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--------RQLSYTEI 71
            +L+ +++ +  SK T+Q+Y    + F  FL FY   + +   +         ++    I
Sbjct: 20  KYLEYIKLYK--SKATIQTYAHSLKNFYDFLYFYYNNRQSKDILLYNTTVWYNKVDRKLI 77

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-RNLKKSNSLPRA-L 129
             +I  +  +K+    +   +  +K++ KYL K K  +     ++   LK    + +  L
Sbjct: 78  EDYIVYQADKKLSADIIHCRIMAVKNYFKYLLKLKKISTETFFDIFDELKTPKIIVKNQL 137

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
             K   TL     +  +    + D RN  IL L+   G+R  E   +  QNI    +T+ 
Sbjct: 138 LIKADKTLSITKAIAKNKNRSFTDDRNIFILLLMSNTGIRRKELACIDIQNINLSNNTIT 197

Query: 190 IQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRY 246
           I   KGDK RI+     ++  ++EY  L    L    +    LF    G           
Sbjct: 198 IYKTKGDKPRIISFSDHIKNKLIEYLKLRKEILQQKNKQHSMLFIKSNGDIFKTKTLTDI 257

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKN 305
           +  + +   +    T H+LR  FAT +  NG D+  I  +LGH  ++TT   Y  V +  
Sbjct: 258 MTSISKKTNI--KVTCHSLRRGFATDMAENGTDVYVISKMLGHQNINTTVSRYIYVLAGM 315

Query: 306 GGDWMMEIYDQTHPSIT 322
             + M       HP   
Sbjct: 316 IKEAMEN-----HPFAK 327


>gi|163782910|ref|ZP_02177906.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882031|gb|EDP75539.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 361

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 107/263 (40%), Gaps = 20/263 (7%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           E    +T+   S   I ++   R  + +   ++ R L+ +++ L+ +K+  + +   +  
Sbjct: 110 EVFGDKTLDYFSEFLIDSYKQDRIKEGVKPSTVNRELNILRAILRKVKEWGMYSGD-LPR 168

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           ++  K  +   R L+ ++   L+D                   ++      GLR SE  S
Sbjct: 169 IKTYKVDDERVRYLSPEELKALIDAC-----------PDWFKPVVKFACLTGLRASELFS 217

Query: 176 LTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
           LT   +   +  + +     K  + + +PL P   + + E       +        +F  
Sbjct: 218 LTWDMVNLSEGYITVPAKYSKTKETKRIPLHPKALEVLRE--VKARQEERWIDYGYVFTN 275

Query: 233 IRGKPLNP--GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             GKP +     ++R  +      G+      H LRH+FA++L+ +G D  ++Q ++ H 
Sbjct: 276 RMGKPYSVEGQGYKRVFKTACEKAGI-RDFRFHDLRHTFASYLVMSGVDFYTVQELMRHS 334

Query: 291 RLSTTQIYTNVNSKNGGDWMMEI 313
               T+ Y +++ ++    + ++
Sbjct: 335 SPRMTKRYAHLSPEHIRKELEKV 357


>gi|158341559|ref|YP_001522723.1| phage integrase [Acaryochloris marina MBIC11017]
 gi|158311800|gb|ABW33409.1| phage integrase [Acaryochloris marina MBIC11017]
          Length = 337

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 62/281 (22%), Positives = 116/281 (41%), Gaps = 28/281 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG---- 84
           R +S  T ++YE D +QF+ +         T +   +++  ++  + +  +T+       
Sbjct: 48  REISSNTRKAYERDLKQFMDW---------TDKGWHEITARDLDRYKNHLKTEPNQRGQL 98

Query: 85  --DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
             + ++ R+L+ ++SF K+L  R    +   L +  LK    LP+  ++ +   L     
Sbjct: 99  RRNATINRNLAALQSFFKWLTVRDYIPKDPTLLLEKLKADPVLPQEFSQDEVDKLY---- 154

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
                +  +   R+ A+L+L+   GLR SE   L   +    + T+R+  K D +  VPL
Sbjct: 155 -QAICDRGFHAFRDRALLHLI-DHGLRASEIHRLNVGDYDGQRITIRV-AKADSVGTVPL 211

Query: 203 LPSVRKAILEYYDLCPFDLN-LNIQLPLFRGI----RGKPLNPGVFQRYIRQLRRYLGLP 257
           L   RKAI +Y        + L    PLF       +G+ L      +  + +     + 
Sbjct: 212 LKKARKAIDQYKQWREQQGDVLENDSPLFVSHSNNSKGQRLQYWGIYKIFKAIAEIAEVE 271

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            +   H  RH+ AT L+    D    + I  H    +   Y
Sbjct: 272 -NAHPHRGRHTLATQLVMKDMDSVLARRITCHASEQSFVRY 311


>gi|33322490|gb|AAQ06972.1|AF496299_2 integrase/recombinase [Lactobacillus delbrueckii subsp. lactis]
          Length = 173

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/179 (22%), Positives = 80/179 (44%), Gaps = 10/179 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L  L+ ER  S  T+ +Y+ D      F     +E        Q+S  ++  ++   
Sbjct: 5   EQFLSYLKNERSYSPKTVLAYQKDLAAAKKFW----QENGGFPGWDQISRRDLEIYLLA- 59

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             QK+   +L R LS +KSF + L +R +      + ++  +    LP    + +   ++
Sbjct: 60  TGQKLASSTLSRKLSSLKSFYRLLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQVI 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                 + ++ K +  RN AI+ L Y  G+R+SE   L  + +  +   + + GKG+K 
Sbjct: 120 -----RSLNDGKPLTVRNRAIVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKD 173


>gi|58616455|ref|YP_195584.1| putative site specific integrase [Azoarcus sp. EbN1]
 gi|56315917|emb|CAI10560.1| putative site specific integrase [Aromatoleum aromaticum EbN1]
          Length = 328

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/292 (20%), Positives = 118/292 (40%), Gaps = 23/292 (7%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T ++Y      F  +     E++  I  +R +    + A++   +T+ +   S+K+ L
Sbjct: 47  PNTRRAYGRAVAGFAAWC----EQEARITALRDIEPVHVAAYVETLQTR-LSAPSVKQHL 101

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR--ALNEKQALTLVDNVLLHTSHETK 150
           + I+    +L   ++   +    +R  K S    +   L   +A  L+D + + T+    
Sbjct: 102 AAIRMLFDWLVVGQVVATNPASAVRGPKHSVKKGKTPVLAADEARALLDAIDVSTA---- 157

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRK 208
            +  R+ A++ L+     RI  AL +  +++     +S +R+  KG K   +P   ++ +
Sbjct: 158 -VGLRDRALIGLMVYTFARIGAALKMRIEDVYVQGRRSWVRLHEKGGKRHEMPCHHNLEE 216

Query: 209 AILEYYDLCPFDLNLNIQLPLFRG-------IRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            +  Y +     L    +  LFR        +  +P++     R I +     G+     
Sbjct: 217 YLHAYIEGAQ--LAGAGKAFLFRTAIGHTGRLSERPMSQADAYRMIGRRAADAGILTRIG 274

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            H+ R +  T  L NGG L   Q +  H    TT +Y   N +   D +  I
Sbjct: 275 NHSFRATGITEYLRNGGKLEIAQQMANHESARTTGLYDRRNDQLTLDEVERI 326


>gi|229015025|ref|ZP_04172100.1| Tyrosine recombinase [Bacillus mycoides DSM 2048]
 gi|228746267|gb|EEL96195.1| Tyrosine recombinase [Bacillus mycoides DSM 2048]
          Length = 358

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 66/330 (20%), Positives = 125/330 (37%), Gaps = 37/330 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEI 71
            + +++  E+    S  TL +Y  D R F  +L       F   + I+   +  L   ++
Sbjct: 27  IEEFVEYKELHD-ASPSTLLNYVYDFRVFFNWLLSEQIIEFKPIKDISFSDLENLKKKDV 85

Query: 72  RAFISKRR-TQKIGDRSLKRSLSGIKSFLKY------------------LKKRKITTESN 112
             F+   +  Q + + S+ R +S +KS  KY                  + K +I  +  
Sbjct: 86  ENFMRFLKLQQNMQNSSVNRKISALKSLFKYLTSLSENDDGECYFYRNVMAKIEIHKDKE 145

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-----RNSAILYLLYGCG 167
            LN R  +  + +    ++++ L  +      +  + +         R+ AIL L  G G
Sbjct: 146 TLNARAKRMRSKIFHNDDDQEFLNYIKYEHEKSLTKHQLFYFLRDKDRDVAILSLFLGSG 205

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           +R+SE   L  ++I   +  + +  KG+K   V + P     + +Y ++         +L
Sbjct: 206 IRVSELADLRMEDINLKERLIDVIRKGNKEDSVWITPIALNDLEKYMEIRDKKYAPGKEL 265

Query: 228 P-LFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             +F         PL+    Q  + +  +  G     + H LRH+ A  L     D   +
Sbjct: 266 KNVFLSKYKHTAQPLSVRAIQDIVEKYTKAYG--KRMSPHKLRHTLANKLYMEEKDSLQV 323

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              LGH    T  +YT +      D +  I
Sbjct: 324 MQQLGHTSQDTALLYTQLGETTIKDSLGRI 353


>gi|85706620|ref|ZP_01037713.1| probable integrase [Roseovarius sp. 217]
 gi|85669032|gb|EAQ23900.1| probable integrase [Roseovarius sp. 217]
          Length = 175

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/148 (39%), Positives = 77/148 (52%), Gaps = 7/148 (4%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD 215
            A L   Y  GLR SEA+SL   +I  D+  L+++ GKG K R V L P +   +  Y+ 
Sbjct: 13  RAALTTAYAAGLRASEAVSLKVTDIDSDRMVLQVRHGKGAKDRTVMLSPQLLGILRTYWR 72

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
           L         +  LF G   KP++  V     R   +  GL    + HTLRHS ATHLL 
Sbjct: 73  LA------RPKDWLFPGRGDKPIDVQVLHSTCRSATKAAGLTKKVSVHTLRHSSATHLLE 126

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +G D+R IQ +LGH  LSTT  YT V +
Sbjct: 127 SGVDIRVIQVLLGHSNLSTTARYTQVAT 154


>gi|229188200|ref|ZP_04315278.1| Tyrosine recombinase [Bacillus cereus BGSC 6E1]
 gi|228595276|gb|EEK53018.1| Tyrosine recombinase [Bacillus cereus BGSC 6E1]
          Length = 358

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 67/330 (20%), Positives = 124/330 (37%), Gaps = 37/330 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEI 71
            + +++  E+    S  TL +Y  D R F  +L       F   + I+   +  L   ++
Sbjct: 27  IEEFVEYKELHD-ASPSTLLNYVYDFRVFFNWLLSEQIIEFKPIKDISFSDLENLKKKDV 85

Query: 72  RAFISKRR-TQKIGDRSLKRSLSGIKSFLKY------------------LKKRKITTESN 112
             F+   +  Q + + S+ R +S +KS  KY                  + K +I     
Sbjct: 86  ENFMRFLKLQQNMQNSSVNRKISALKSLFKYLTSLSENEDGECYFYRNVMAKIEIHKNKE 145

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-----RNSAILYLLYGCG 167
            LN R  +  + +    ++++ L  V      +  + +         R+ AIL L  G G
Sbjct: 146 TLNARAKRMRSKIFHNDDDQEFLNYVKYEHEKSLTKHQLFYFLRDKDRDVAILSLFLGSG 205

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           +R+SE   L  ++I   +  + +  KG+K   V + P     + +Y ++         +L
Sbjct: 206 IRVSELADLRMEDINLKERLIDVIRKGNKEDSVWITPIALNDLEKYMEIRVNKYAPGKEL 265

Query: 228 P-LFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             +F         PL+    Q  + +  +  G     + H LRH+ A  L     D   +
Sbjct: 266 KNVFLSKYKHTAQPLSVRAIQDIVEKYTKAYG--KKMSPHKLRHTLANKLYMEEKDSLQV 323

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              LGH    T  +YT +      D +  I
Sbjct: 324 MQQLGHTSQDTALLYTQLGETTIKDSLGRI 353


>gi|217968817|ref|YP_002354051.1| integrase [Thauera sp. MZ1T]
 gi|217506144|gb|ACK53155.1| integrase domain protein SAM domain protein [Thauera sp. MZ1T]
          Length = 259

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 100/257 (38%), Gaps = 26/257 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ  L ++ + R L+  T  +Y     +F  +L          +     +  ++R +   
Sbjct: 12  RQRMLDDMRM-RKLTPKTQSAYIRAVCRFTRYLG---------RAPDTATVEDLRNYQLH 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    SL  ++SG+K F     +R       +  M+ ++    LP  L+ ++   L
Sbjct: 62  LVDSGTSPMSLNAAISGLKFFFDITLQRGEL----MARMQPVRLPQRLPVVLSREEVARL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
           +              + ++   L L Y  GLR SE +SL   ++   + TLR+ QGKG K
Sbjct: 118 IAAC----------NNLKHQTALSLAYATGLRASEVVSLKVSDVDSGRMTLRVEQGKGRK 167

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRRYLG 255
            R   L P + + +  ++ +      +     LF G+     L+P    R ++      G
Sbjct: 168 DRYAMLSPLLLERLRVWWRVARAQGKMLDGGWLFPGLNPIESLSPRQLNRAVQAAALAAG 227

Query: 256 LPLSTTAHTLRHSFATH 272
           +    + HTLRH     
Sbjct: 228 IDKGVSMHTLRHYSVCR 244


>gi|251772576|gb|EES53141.1| putative phage integrase [Leptospirillum ferrodiazotrophum]
          Length = 367

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/268 (20%), Positives = 101/268 (37%), Gaps = 21/268 (7%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKIT 108
            A +  EKI  +    L+ +++R  +++ R  + +  +++      +++ L    +    
Sbjct: 92  YASWWIEKIGEKRTNDLTPSDLRKILNEARDSRDLSPQTINHFFGHLRAALNEALRDGKI 151

Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
             S +     L       R L E + L L + +              +  ++      GL
Sbjct: 152 DHSPMQGFSLLPTPRGRLRFLTEGEELRLREVM-----------TPADFRLVRFAILTGL 200

Query: 169 RISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           R  E  SLT  +I      L I + K    R VPL     + +              +  
Sbjct: 201 RREEQFSLTWSDIDLQNRVLTIPRSKHGGTRHVPLSDEAVEILKAIRTERRV-----VSA 255

Query: 228 PLFRGIRG-KPLNPGVFQRYIR-QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
             F        ++P  F R +        G+      HTLRH+ A+ L+  G D+R++Q 
Sbjct: 256 WCFPSQNPATHIDPQNFYRRVYLPALEKAGI-KDVIWHTLRHTCASRLVMAGVDIRTVQE 314

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           ILGH  L+ T  Y++++  +    +  I
Sbjct: 315 ILGHKTLAMTTRYSHLSGAHLTQAVNRI 342


>gi|206973194|ref|ZP_03234116.1| integrase/recombinase, phage integrase family [Bacillus cereus
           AH1134]
 gi|206732078|gb|EDZ49278.1| integrase/recombinase, phage integrase family [Bacillus cereus
           AH1134]
          Length = 332

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 72/327 (22%), Positives = 123/327 (37%), Gaps = 43/327 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL-----------AFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           LS  TL +Y  +  +FL +L                  + I T+  L   E R F    +
Sbjct: 5   LSPATLYAYITEFEKFLKWLISNRLVVENGKVVTNICDVPITTLENLPLNEARTFQRYLQ 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKK-------RKITTESNILNMRNLKKSNSLPR----- 127
            + I  R++ R+ S +KS  KYL +           + + +  +   K+           
Sbjct: 65  GEGIETRAINRTFSALKSLFKYLAQNTENEQGENYISRNVMEKIELHKEKVDAAARADDV 124

Query: 128 ---ALNEKQALTLVD-------NVLLHTSHETKWIDARNSA----ILYLLYGCGLRISEA 173
                NEK  +  +         +L   S +      R+      I+ L+ G GLR+SE 
Sbjct: 125 ANMIFNEKDDVAFLQFLANDYGEMLNDISPKKYSFFQRDKERDIPIISLILGTGLRVSEV 184

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRG 232
            SLT  +I   Q  + +  KG+K   +    S    + EY  + P   N    +  LF  
Sbjct: 185 ASLTISSINFRQGKVEVTRKGNKRSSILATRSCLDDVQEYIKVRPGKYNCPQDEDLLFVT 244

Query: 233 I---RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
               +   L     Q+   +           + H LRH++AT+      DL  ++  LGH
Sbjct: 245 NYKGKYTQLTVRSIQKLCDKYSSA--FDEKRSPHKLRHTYATNHYKENKDLVLLRDQLGH 302

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             +  T IYTN+N++   + +  +  +
Sbjct: 303 TSIEVTSIYTNINNEKKREAVDRLERR 329


>gi|225405812|ref|ZP_03761001.1| hypothetical protein CLOSTASPAR_05033 [Clostridium asparagiforme
           DSM 15981]
 gi|225042679|gb|EEG52925.1| hypothetical protein CLOSTASPAR_05033 [Clostridium asparagiforme
           DSM 15981]
          Length = 348

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 115/283 (40%), Gaps = 32/283 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR- 79
           +L  + + RG ++ T+++Y  + + F   +          + I  ++  +IR +++  + 
Sbjct: 70  YLATMVV-RGCTEKTVETYTQEYKTFFGTIN---------KAIPNITTRDIRGYLAHCKL 119

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +   D ++      ++   ++L + +    + +L +++ K  + +    +++Q     D
Sbjct: 120 VRHNKDTTINNKTRMLRGLFEWLTEEEYIDRNPMLRIKDNKVDHRVKEVFSDEQVTIYKD 179

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                     K    R+ AI+  L+  G+RISE ++L   +I        + GKG K R 
Sbjct: 180 L--------AKQHGKRSIAIVDFLHRTGVRISEMVALDRSDIDFQDRQCIVYGKGRKERP 231

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR----RY 253
           V         + +Y      +   +    LF GIR     L     +  +R++R    R 
Sbjct: 232 VYFSGDAAVHLRDYL-----ESRTDNNPALFVGIRKPFNRLTDDAVRLILREIRDMDDRM 286

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            G+      H  R  F T LL     L  +  + GH  L+TT+
Sbjct: 287 AGIA--INPHKWRRQFVTELLEKDVPLTLVADLAGHKNLNTTK 327


>gi|67077907|ref|YP_245527.1| site-specific tyrosine recombinase XerS [Bacillus cereus E33L]
 gi|66970213|gb|AAY60189.1| tyrosine recombinase [Bacillus cereus E33L]
          Length = 358

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 66/330 (20%), Positives = 123/330 (37%), Gaps = 37/330 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEI 71
            + +++  E+    S  TL +Y  D R F  +L           + I+   +  L   ++
Sbjct: 27  IEEFVEYKELHD-ASPSTLLNYVYDFRVFFKWLLSEQIIELKPIKDISFSDLENLKKKDV 85

Query: 72  RAFISKRR-TQKIGDRSLKRSLSGIKSFLKY------------------LKKRKITTESN 112
             F+   +  Q + + S+ R +S +KS  KY                  + K +I  +  
Sbjct: 86  ENFMRFLKLQQNMQNSSVNRKISALKSLFKYLTSLSENEDGECYFYRNVMAKIEIHKDKE 145

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-----RNSAILYLLYGCG 167
            LN R  +  + +    ++++ L  V      +  + +         R+ AIL L  G G
Sbjct: 146 TLNARAKRMRSKIFHNDDDQEFLNYVKYEHEKSLTKHQLFYFLRDKDRDVAILSLFLGSG 205

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           +R+SE   L  ++I   +  + +  KG+K   V + P     + +Y  +         +L
Sbjct: 206 IRVSELADLRMEDINLKERLIDVIRKGNKEDSVWITPIALNDLEKYMGIRDNKYAPGKEL 265

Query: 228 P-LFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             +F         PL+    Q  + +  +  G     + H LRH+ A  L     D   +
Sbjct: 266 KNVFLSKYKHTAQPLSVRAIQDIVEKYTKAYG--KKMSPHKLRHTLANKLYMEEKDSLQV 323

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              LGH    T  +YT +      D +  I
Sbjct: 324 MQQLGHTSQDTALLYTQLGETTIKDSLGRI 353


>gi|307149816|ref|YP_003890859.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306986616|gb|ADN18494.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 321

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 66/310 (21%), Positives = 121/310 (39%), Gaps = 20/310 (6%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT------ 54
           M+ + L     F L+    + L  L   +  S+ T  +Y  D R F  ++A         
Sbjct: 1   MKPSVLVHQNEFALIPTEPDVLAQLLAGKR-SRNTQNAYALDLRDFFYYVAGVDSPTPVI 59

Query: 55  -EEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
            +E + +     LS   +  + +     +K+ + ++ R L+ IKS ++   +      + 
Sbjct: 60  VKEFLELDQFAALSL--VLKYKAHLSNERKLKEATVNRRLAAIKSLVRLGNQLGQCRFTL 117

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
                   K + + R  +           +L           R+ AIL LL+   LR  E
Sbjct: 118 AE-----VKGDKIVRYRDTTGISKEAYRKMLAIPALDTLKGKRDYAILRLLWDNALRRGE 172

Query: 173 ALSLTPQNIMDDQSTLRI--QGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPL 229
                 +++  D  +L I  +GKG + + + L     +AI ++       D+N  + + L
Sbjct: 173 IEQADIKDLDLDGRSLLILGKGKGQQKQSITLSRPTVEAITQWLHARRELDINQPLFIAL 232

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILG 288
            R   G  L      + +  +    G+    + H +RHS  T  L   GGD+R +Q +  
Sbjct: 233 DRSSYGHRLTGTAIYKIVESIATGAGITKKLSPHRIRHSSVTAALDATGGDVRKVQKLSR 292

Query: 289 HFRLSTTQIY 298
           H  L+T  IY
Sbjct: 293 HADLNTLMIY 302


>gi|225574819|ref|ZP_03783429.1| hypothetical protein RUMHYD_02896 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038019|gb|EEG48265.1| hypothetical protein RUMHYD_02896 [Blautia hydrogenotrophica DSM
           10507]
          Length = 279

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/296 (18%), Positives = 117/296 (39%), Gaps = 34/296 (11%)

Query: 17  ERQNWLQNL-EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  ++L  L   ER L+  T++ Y+ D + FL+++  +                 +  + 
Sbjct: 9   QLDSYLDYLKRQERSLA--TIKQYQRDIQSFLMYIKKHG-----------FCKESVIQYK 55

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            K R + +   S+   L+ I  FL Y    ++        ++ L+      +    K+  
Sbjct: 56  EKLRKEYL-PASVNVKLAAINGFLNYSGATEL-------KVKQLRIQK---KTYCAKEKE 104

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
              +  L   +        + + +L  + G G+R+SE   +T + + + ++ + ++GK  
Sbjct: 105 LSKNEYLCMVNTARSLGQEKLALLLQTICGTGIRVSELSFITAEAVCNGEALIHMKGK-- 162

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
             R V +   +RK +  Y               +F    G+PL+     + +++L    G
Sbjct: 163 -TRTVLIPGKLRKVLKRYMGSQKI-----SSGAVFVTRTGRPLDRSNIWKMMKRLCGKAG 216

Query: 256 L-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           +       H LRH FA    +   D+  +  +LGH  ++TT+IY   +       M
Sbjct: 217 VETKKVFPHNLRHLFARCFYAADKDIAKLADVLGHSSINTTRIYIKSSGVEHRQRM 272


>gi|186686716|ref|YP_001869910.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186469601|gb|ACC85399.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
          Length = 322

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 63/305 (20%), Positives = 117/305 (38%), Gaps = 20/305 (6%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
            N LP ++ +    +    L  L  E+  S+ T ++Y+ D + F  F   +  E      
Sbjct: 10  NNTLPSVLDWWTQPDV---LAMLLSEKR-SESTRKAYDRDIKDF--FTKMFAVESTAEWV 63

Query: 63  IRQLSYTEIRAFI------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           +R L+    +A +      +K   Q++ + ++ R LS +++ +   +   +        +
Sbjct: 64  VRFLALPGAQALLWVVKYKAKMIEQRLSEATVNRRLSALRALVHKGRVLGVCG----YTL 119

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
            ++K   ++ +  +           +L T   T     R+ A+L LL+   LR  E   L
Sbjct: 120 EDIK-GETVIKYRDTSGVTPQEFKQILLTCDPTTAKGVRDYALLRLLWDNALRRGEIAKL 178

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLL--PSVRKAILEYYDLCPFDLNLNI-QLPLFRGI 233
              +     S L I GKG   +   +   P  R AI  +          +   + L    
Sbjct: 179 KMGDFDRQNSKLLILGKGRGSQRETIDLTPKTRDAICYWLAFRGLASTKDALFVALDLNT 238

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            G PL      + +R   +   +    + H +RHS  T  L  G  +R +Q +  H +L 
Sbjct: 239 PGHPLTDTGIAKMVRTRAKKANISKPLSPHRIRHSSITAALDAGQSVREVQKLSRHTKLE 298

Query: 294 TTQIY 298
           T  IY
Sbjct: 299 TLMIY 303


>gi|190404489|ref|YP_001961120.1| rcorf145 [Agrobacterium rhizogenes]
 gi|158322285|gb|ABW33702.1| rcorf145 [Agrobacterium rhizogenes]
          Length = 413

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 60/284 (21%), Positives = 108/284 (38%), Gaps = 15/284 (5%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
             L  ERGL+  T+ SY+  + +FL  +               L+   +  ++ +     
Sbjct: 125 AYLSNERGLAASTVGSYKLLSLRFLREVC-----PAGANGFAALTPEIVIGYVERHALDG 179

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLPRALNEKQALTLVDN 140
               S K     +++ L+YL  +   + +    + ++++     LP  L  ++   ++D 
Sbjct: 180 -SADSGKAMCGVVRALLRYLHLKGFISTALADCVPSIRRWRLAGLPTFLPPEKVQKVLDA 238

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                   T  +  R+ A+L +L   GLR SE  +L   +I     T+ + GKG +   +
Sbjct: 239 C-----DRTTAMGHRDYAVLMILAKLGLRASEVATLNLDDIDWQSGTILVHGKGRRQATM 293

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP--L 258
           PL   V  AI+ Y                         +        +Q     G+    
Sbjct: 294 PLRHDVGTAIVAYIRHGRPASACRRVFLRTLAPHVGFASGCAITMIAKQALERAGIDGYA 353

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              AH  RHS AT LL +G     I  +L H  + +T+IY  ++
Sbjct: 354 HHGAHLFRHSLATDLLRSGASFAEIGQLLRHRSIDSTRIYAKLD 397


>gi|332300582|ref|YP_004442503.1| integrase family protein [Porphyromonas asaccharolytica DSM 20707]
 gi|332177645|gb|AEE13335.1| integrase family protein [Porphyromonas asaccharolytica DSM 20707]
          Length = 414

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 74/309 (23%), Positives = 128/309 (41%), Gaps = 25/309 (8%)

Query: 14  LLKERQNWLQNLEIE--RGLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTE 70
           LL     +L ++  +  + LSK +LQ Y      F+ FL   Y  E I +    + + + 
Sbjct: 109 LLPVIDRYLDHIAQQVGKSLSKDSLQKYTVVKTHFVRFLKSTYNREDIGLL---EFTPSV 165

Query: 71  IRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +  F    +T+  +   + ++ L  +K+   + +KR I      L+++   K       L
Sbjct: 166 VMDFELYLKTKANLAHNTAQKKLKLLKTMTIFAQKRGIIMHDPFLDIKFHTKPVDR-GFL 224

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQST 187
            E +   +V   L          D     I       GL   +  +LTP++I  MDD+  
Sbjct: 225 TEDEVSLIVAKDLTRLPRLELVRD-----IFIFSCFTGLAYIDVRNLTPEDIVVMDDKEW 279

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           +  + K   I    LL  + KAI+  Y+   +         LF       L+      Y+
Sbjct: 280 VMSKRKKTNIAFNVLLLDLPKAIISKYNHDTYR-----DGKLFP-----ILSNQKTNSYL 329

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +++    G+  + T H  RH+FAT  LS G  + S+  +LGH  + TTQIY  + +K   
Sbjct: 330 KEIADICGIKKNLTFHLARHTFATLCLSKGVPMESVSKMLGHTNIRTTQIYARITNKKIE 389

Query: 308 DWMMEIYDQ 316
             M +  D+
Sbjct: 390 HDMEQFADK 398


>gi|186474605|ref|YP_001863576.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198564|gb|ACC76526.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 413

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 61/289 (21%), Positives = 126/289 (43%), Gaps = 16/289 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             ++ +    E+GL++ T+  Y     +FL +           +++ ++  ++I A+++ 
Sbjct: 121 LDDYCKWATNEQGLAESTVGLYARRITRFLRWYG------PGGRSLSEVRVSDIDAYLAY 174

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS--NSLPRALNEKQAL 135
            R Q  G  +++ ++  +++F ++         S    ++  +     +LP         
Sbjct: 175 ERRQGWGRLTIRSAVDAMRAFFRFGGVSHWCKPSFAAAIQGPRIYSLENLPAGPAWVDVS 234

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KG 194
            +       + + T   D R  A+L LL   G+R SE   L   +I  ++  LR++  K 
Sbjct: 235 RVF-----ASLNSTDPKDIRARAVLMLLSIYGMRASEVAKLRLDDIDWERDQLRVRRAKR 289

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            ++++ PLLPSV KAI++Y        + + ++ L      +PL+       +    +  
Sbjct: 290 RELQVYPLLPSVGKAIVDYLQH-VRPRSAHREVFLILMSPFRPLSAKGIYGVVSPRLKAA 348

Query: 255 GLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +       H LRH+ A  L++ G  L+ +   LGH     T+IYT V+
Sbjct: 349 DVHCAHHGPHALRHACAARLVAQGLSLKEVGDHLGHRSTRATRIYTKVD 397


>gi|323487258|ref|ZP_08092561.1| hypothetical protein HMPREF9474_04312 [Clostridium symbiosum
           WAL-14163]
 gi|323399484|gb|EGA91879.1| hypothetical protein HMPREF9474_04312 [Clostridium symbiosum
           WAL-14163]
          Length = 344

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 63/307 (20%), Positives = 120/307 (39%), Gaps = 38/307 (12%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           +FE+L + QN L    I  G +K T++ Y  + +  L++             IR +    
Sbjct: 60  TFEILHDWQNQL----IIDGKTKSTIKQYGYEIKNLLLYAG---------TGIRDIREKH 106

Query: 71  IRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +  ++++ + QK   D++    +  +++F K+  +  + T   +  ++  K+   +   L
Sbjct: 107 VIGYLTRGKVQKKWKDKTYNSKVRSLRAFFKWAYEYDVITTDPMKRIKETKEEYRMGSIL 166

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
             +Q                        A++ LLY  G R+SE + L   +I      + 
Sbjct: 167 TPEQREIFRCCCKNERE----------LALVDLLYSSGGRVSEIIQLNRDSIDLSNRRVN 216

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYI 247
           I GKG K R +      +  I  Y      D        LF   +   K L+    +  +
Sbjct: 217 IVGKGRKEREIRFSAQAKVHIEGYLRSRKDD-----SQALFVSQKAPHKRLSDDGVRYIL 271

Query: 248 RQL----RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN 302
           + +     R  GL    + HT R +  T +++ G     +Q  LGH ++ TT Q Y  ++
Sbjct: 272 KTIQSRDVRLKGLQ--ISPHTFRRTCGTDMINRGAPAELVQKKLGHTKVDTTLQCYAKIS 329

Query: 303 SKNGGDW 309
            +   D 
Sbjct: 330 QEAARDA 336


>gi|297618854|ref|YP_003706959.1| integrase family protein [Methanococcus voltae A3]
 gi|297377831|gb|ADI35986.1| integrase family protein [Methanococcus voltae A3]
          Length = 295

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/302 (23%), Positives = 127/302 (42%), Gaps = 26/302 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L      SK TL+SY      F+ F    + E ITI       Y   R+      
Sbjct: 11  RYLNFLSA---RSKDTLKSYRASLNIFMNFFQEKSWETITIDDALFF-YNNYRSH----N 62

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLKKSNSLPRALNEKQALTLV 138
            + I   +  R L+ +  F ++  + K    + + L ++ L+      + L++ QA  L+
Sbjct: 63  GKPIQISTTIRRLTDVNRFYEWAIENKYLINNPLKLYVKTLRPQLKERQCLSKNQAKLLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKI 197
                     +K  D         L   G+RISE ++++  ++     ++ I+ GKG+K 
Sbjct: 123 ----------SKIEDYHYYIFTLFLIKTGVRISEFINISLNDMDLSDRSIIIKSGKGNKD 172

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF---QRYIRQLRRYL 254
           R V +   +   I +Y     F LN  I   LF    G  L+ G     +RY+R + + +
Sbjct: 173 RYVFIDDELLLHIKQYLKYREF-LNPKIDR-LFLTKSGYKLSEGQISDYRRYLRTISKDI 230

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            L +  T H LRH+F T    +  ++  +  I+GH  ++TT  Y + + +      + + 
Sbjct: 231 -LNIIVTPHVLRHTFGTLACESNMNIEILSKIMGHANVNTTMTYIHSSKEFRKKEFLRVM 289

Query: 315 DQ 316
           + 
Sbjct: 290 NN 291


>gi|229065294|ref|ZP_04200573.1| Tyrosine recombinase [Bacillus cereus AH603]
 gi|228715944|gb|EEL67681.1| Tyrosine recombinase [Bacillus cereus AH603]
          Length = 357

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 67/330 (20%), Positives = 125/330 (37%), Gaps = 37/330 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEI 71
            + +++  E+    S  TL +Y  D R F  +L       F   + I+   +  L   ++
Sbjct: 27  IEEFVEYKELHD-ASPSTLLNYVYDFRVFFNWLLSEQIIEFKPIKDISFSDLENLKKKDV 85

Query: 72  RAFISKRR-TQKIGDRSLKRSLSGIKSFLKY------------------LKKRKITTESN 112
             F+   +  Q + + S+ R +S +KS  KY                  + K +I  +  
Sbjct: 86  ENFMRFLKLQQNMQNSSVNRKISALKSLFKYLTSLSENDDGECYFYRNVMAKIEIHKDKE 145

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-----RNSAILYLLYGCG 167
            LN R  +  + +    ++++ L  +      +  + +         R+ AIL L  G G
Sbjct: 146 TLNARAKRMRSKIFHNDDDQEFLNYIKYEHEKSLTKHQLFYFLRDKDRDVAILSLFLGSG 205

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           +R+SE   L  ++I   +  + +  KG+K   V + P     +  Y ++      L  +L
Sbjct: 206 IRVSELADLRMEDINLKERLIDVIRKGNKEDSVWITPIALNDLENYMEIRDKKYALGKEL 265

Query: 228 P-LFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             +F         PL+    Q  + +  +  G     + H LRH+ A  L     D   +
Sbjct: 266 KNVFLSKYKHTAQPLSVRAIQDIVEKYTKAYG--KRMSPHKLRHTLANKLYMEEKDSLQV 323

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              LGH    T  +YT +      D +  I
Sbjct: 324 MQQLGHTSQDTALLYTQLGETTIKDSLGRI 353


>gi|297618820|ref|YP_003706925.1| integrase family protein [Methanococcus voltae A3]
 gi|297377797|gb|ADI35952.1| integrase family protein [Methanococcus voltae A3]
          Length = 295

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 71/302 (23%), Positives = 127/302 (42%), Gaps = 26/302 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L      SK TL+SY      F+ F    + E ITI       Y   R+      
Sbjct: 11  RYLNFLSA---RSKDTLKSYRASLNIFMNFFQEKSWETITIDDALFF-YNNYRSH----N 62

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLKKSNSLPRALNEKQALTLV 138
            + I   +  R L+ +  F ++  + K    + + L +R L+      + L++ QA  L+
Sbjct: 63  GKPIQISTTIRRLTDVNRFYEWAIENKYLINNPLKLYVRTLRPQLKERQCLSKNQAKLLL 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKI 197
                     +K  D         L   G+RISE ++++  ++     ++ I+ GKG+K 
Sbjct: 123 ----------SKIEDYHYYIFTLFLIKTGVRISEFINISLNDMDLSDRSIIIKSGKGNKD 172

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF---QRYIRQLRRYL 254
           R V +   +   I +Y     F LN  I   LF    G  L+ G     +RY+R + + +
Sbjct: 173 RYVFIDDELLLHIKQYLKYREF-LNPKIDR-LFLTKGGYKLSEGQISDYRRYLRTISKDI 230

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            L +  T H LRH+F T    +  ++  +  I+GH  ++TT  Y + + +      + + 
Sbjct: 231 -LNIIVTPHVLRHTFGTLACESNMNIEILSKIMGHANVNTTMTYIHSSKEFRKKEFLRVM 289

Query: 315 DQ 316
           + 
Sbjct: 290 NN 291


>gi|228931343|ref|ZP_04094272.1| Tyrosine recombinase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228828346|gb|EEM74052.1| Tyrosine recombinase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 361

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 66/330 (20%), Positives = 124/330 (37%), Gaps = 37/330 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEI 71
            + +++  E+    S  TL +Y  D R F  +L           + I+   +  L   ++
Sbjct: 27  IEEFVEYKELHD-ASPSTLLNYVYDFRVFFNWLLSEQIIELKPIKDISFSDLENLKKKDV 85

Query: 72  RAFISKRR-TQKIGDRSLKRSLSGIKSFLKY------------------LKKRKITTESN 112
             F+   +  Q + + S+ R +S +KS  KY                  + K +I  +  
Sbjct: 86  ENFMRFLKLQQNMQNSSVNRKISALKSLFKYLTSLSENEEGECYFYRNVMAKIEIHKDKE 145

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-----RNSAILYLLYGCG 167
            LN R  +  + +    ++++ L  V      +  + +         R+ AIL L  G G
Sbjct: 146 TLNARAKRMRSKIFHNDDDQEFLNYVKYEHEKSLTKHQLFYFLRDKNRDVAILSLFLGSG 205

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           +R+SE   L  ++I   +  + +  KG+K   V + P     + +Y ++         +L
Sbjct: 206 IRVSELADLRMEDINLKERLIDVIRKGNKEDSVWITPIALNDLEKYMEIRDNKYAPGKEL 265

Query: 228 P-LFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             +F         PL+    Q  + +  +  G     + H LRH+ A  L     D   +
Sbjct: 266 KNVFLSKYKHTAQPLSVRAIQDVVEKYTKAYG--KRMSPHKLRHTLANKLYMEEKDSLQV 323

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              LGH    T  +YT +      D +  I
Sbjct: 324 MQQLGHTSQDTALLYTQLGETTIKDSLGRI 353


>gi|228950100|ref|ZP_04112285.1| Integrase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228809627|gb|EEM56063.1| Integrase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 380

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/355 (20%), Positives = 136/355 (38%), Gaps = 54/355 (15%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE------ 56
            NN+P  V           ++ LE++  LS  TL +Y  +  +F  ++            
Sbjct: 36  KNNMPWYV-----------IEYLEMKTALSPATLYAYITEFEKFFKWIILKRLAVVNGNV 84

Query: 57  -----KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111
                 I I+T++ L   ++  F    + + I  R++ R+ S +KS  KYL +       
Sbjct: 85  VTNITDIPIETLQTLPLNDVNRFHMYLQGEGIETRAINRTFSALKSLFKYLVQNSEDEHG 144

Query: 112 NILNMRNLKKSNSLPR-----ALNEKQALTLVDNVLLHTSHETKWIDAR----------- 155
                RN+ +   L +     A    +   ++ N     +     I+             
Sbjct: 145 KSYLSRNVMEKIELHKEKVDAAARADEVANIIFNDNEDVAFLRFLINDYATILKETSTRK 204

Query: 156 ----------NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
                     + A++ L+ G GLR+SE  SLT  +I   Q T+++  KG+K   +    S
Sbjct: 205 YNYFLRDKERDIALISLILGTGLRVSELASLTLSSINFRQGTIKVTRKGNKKSSILATKS 264

Query: 206 VRKAILEYYDLCPFD-LNLNIQLPLFRGI---RGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
               + EY  +     +    +  LF      +   L+    Q  + +           +
Sbjct: 265 CLDDVQEYMKVRLEKYMCPPEEDILFVTRYQGKYTQLSVRAIQNLVEKYSSA--FDEKRS 322

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            H LRH++AT+      DL  ++  LGH  +  T IYTN+N++   + +  +  +
Sbjct: 323 PHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAIDRLEKR 377


>gi|229136804|ref|ZP_04265451.1| Tyrosine recombinase [Bacillus cereus BDRD-ST196]
 gi|228646665|gb|EEL02853.1| Tyrosine recombinase [Bacillus cereus BDRD-ST196]
          Length = 357

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 67/330 (20%), Positives = 125/330 (37%), Gaps = 37/330 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEI 71
            + +++  E+    S  TL +Y  D R F  +L       F   + I+   +  L   ++
Sbjct: 27  IEEFVEYKELHD-ASPSTLLNYVYDFRVFFNWLLSEQIIEFKPIKDISFSDLENLKKKDV 85

Query: 72  RAFISKRR-TQKIGDRSLKRSLSGIKSFLKY------------------LKKRKITTESN 112
             F+   +  Q + + S+ R +S +KS  KY                  + K +I  +  
Sbjct: 86  ENFMRFLKLQQNMQNSSVNRKISALKSLFKYLTSLSENDDGECYFYRNVMAKIEIHKDKE 145

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-----RNSAILYLLYGCG 167
            LN R  +  + +    ++++ L  +      +  + +         R+ AIL L  G G
Sbjct: 146 TLNARAKRMRSKIFHNDDDQEFLNYIKYEHEKSLTKHQLFYFLRDKDRDVAILSLFLGSG 205

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           +R+SE   L  ++I   +  + +  KG+K   V + P     + +Y ++         +L
Sbjct: 206 IRVSELADLRMEDINLKERLIDVIRKGNKEDSVWITPIALNDLEKYMEIRDKKYAPGKEL 265

Query: 228 P-LFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             +F         PL+    Q  + +  +  G     + H LRHS A  L     D   +
Sbjct: 266 KNVFLSKYKHTAQPLSVRAIQDIVEKYTKSFG--KRMSPHKLRHSLANKLYMEEKDSLQV 323

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              LGH    T  +YT +      D +  I
Sbjct: 324 MQQLGHTSQDTALLYTQLGETTIKDSLGRI 353


>gi|324323830|gb|ADY24874.1| integrase-recombinase protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
 gi|324323973|gb|ADY25016.1| integrase-recombinase protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 280

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 62/303 (20%), Positives = 132/303 (43%), Gaps = 32/303 (10%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E +++   L +E+G  ++T++ Y+   + F  +L           +++ L+  +I+ +I 
Sbjct: 7   ELKDFGTYL-LEQGKREITVEDYKRHIQNFHSWLVHEN------SSLQDLTRYDIQQYIY 59

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                     ++    S I S++ ++ +  +  +     +R+++  +  P++L+  Q   
Sbjct: 60  FLSGCGNQATTITPKFSAIVSYVHFIDREDLLHDIKRPEVRHIRHIS--PKSLSRNQRNQ 117

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQ-GK 193
           L+  V           + RN AI+YL    G+RI E ++L  ++  + +    L +Q GK
Sbjct: 118 LLRKVEQSE-------NLRNIAIIYLTLYTGVRIFELVALNREDIEMRERSGFLTVQDGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G   R +PL    R  +  Y          + Q  LF    GK L+    QR        
Sbjct: 171 GGISRKIPLPVESRYHLQRYLQSR-----TDSQSALFLSNYGKRLSKRSAQRVFENY--- 222

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                   AH LRH++   L+++G D+ ++  ++GH  ++TT+ Y   +  +    +  +
Sbjct: 223 -----GIHAHMLRHTYGRELVASGIDIATVAELMGHNDVNTTKRYAAPSMTDLEQAIDNV 277

Query: 314 YDQ 316
           + +
Sbjct: 278 FQR 280


>gi|325002054|ref|ZP_08123166.1| integrase family protein [Pseudonocardia sp. P1]
          Length = 264

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 96/250 (38%), Gaps = 8/250 (3%)

Query: 49  FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT 108
               +  E+   +T+ +L+ + IR ++           +++    G+  F  +L      
Sbjct: 1   MYCEWLREQGRPETLDELTRSAIRGWLESLIEAGREPSTVRTRFKGLHRFCGWLVAEGDL 60

Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
           +E  +  M            L++++   LV            +   R+ A++  L   G+
Sbjct: 61  SEHPMTGMEPPTAQQKPVPVLSDQELDKLVKVC-----RGRDFTSRRDEAMIRFLLDTGV 115

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
           R+SE   L+  ++  D+ T  ++GKG+K+R V       +A+ +Y               
Sbjct: 116 RVSELCGLSVTDVDLDRETAIVRGKGNKVRAVYPSTKTVRALDQYLRAR-RAHRWTHLDA 174

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           L+   R   L+    +  +R      G+P     H  RH+FA   + +GG  R ++ + G
Sbjct: 175 LWLTQR-GALSTDGARERVRIRGEQAGIP-DLHPHRFRHTFAHDYMVSGGQERDLKRLAG 232

Query: 289 HFRLSTTQIY 298
                  + Y
Sbjct: 233 WSSDVMLERY 242


>gi|317058175|ref|ZP_07922660.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           3_1_5R]
 gi|313683851|gb|EFS20686.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           3_1_5R]
          Length = 325

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/299 (17%), Positives = 120/299 (40%), Gaps = 40/299 (13%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR--- 86
            LS+ +L+ Y+ +  +F         + +  +    ++  ++R +I+   ++    +   
Sbjct: 54  NLSENSLKVYKDNLERF---------DSVIKKNFLDVTTEDVRFYIATVISKNSSVKETY 104

Query: 87  --SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALTLVDNVL 142
             +++R L   K+F ++L    +   + +  ++ ++   S  LP   +  +   L +   
Sbjct: 105 LDNIRRFL---KTFFQFLVDEGLIKTNPVTRIKPIRGNTSEKLP--FSNMEIEKLRNAC- 158

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
                          A++ +L     R  E   +   +I  ++ ++R  GKG K+    L
Sbjct: 159 ---------SSCLEKAVIEILISTAFRRQELAEIKLSDIDFEKGSIRTIGKGKKLGYGFL 209

Query: 203 LPSVRKAILEYYDLCPFD----LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
                 A++EY +         L +  +   FR   G+P +       I+++ +  G+  
Sbjct: 210 NAKALLALIEYIEKERESKSVFLFIRGKNKRFREKAGEPYDASSLYALIKKIGKKAGVT- 268

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
               H  R + AT  L  G  L  ++ +L H  + TT IYT +N     D + + +++ 
Sbjct: 269 HVHPHRFRRTAATKALDRGLGLEDVKELLRHEDIKTTLIYTTLN----KDRLKDKHNRF 323


>gi|75761190|ref|ZP_00741178.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|228905242|ref|ZP_04069233.1| Tyrosine recombinase [Bacillus thuringiensis IBL 4222]
 gi|74491323|gb|EAO54551.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|228854396|gb|EEM99063.1| Tyrosine recombinase [Bacillus thuringiensis IBL 4222]
          Length = 358

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/330 (19%), Positives = 124/330 (37%), Gaps = 37/330 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEI 71
            + +++  E+    S  TL +Y  D R F  +L       F   + ++   +  L   ++
Sbjct: 27  IEEFVEYKELHD-ASPSTLLNYVYDFRVFFNWLLSEQIIEFKPIKDVSFSDLENLKKKDV 85

Query: 72  RAFISKRR-TQKIGDRSLKRSLSGIKSFLKY------------------LKKRKITTESN 112
             F+   +  Q + + S+ R +S +KS  KY                  + K +I  +  
Sbjct: 86  ENFMRFLKLQQNMQNSSVNRKISALKSLFKYLTSLSENEDGECYFYRNVMAKIEIHKDKE 145

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID-----ARNSAILYLLYGCG 167
            LN R  +  + +    ++++ L  +      +    +         R+ AIL L  G G
Sbjct: 146 TLNARAKRMRSKIFHNDDDQEFLNYIKYEHEKSLTRHQLFYFLRDKERDVAILSLFLGSG 205

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           +R+SE   L  ++I   +  + +  KG+K   V + P     + +Y ++         +L
Sbjct: 206 IRVSELADLRMEDINLKERLIDVIRKGNKEDSVWITPIALNDLEKYMEIRGNKYAPGKEL 265

Query: 228 -PLFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             +F         PL+    Q  + +  +  G     + H LRH+ A  L     D   +
Sbjct: 266 QNVFLSKYKHTAQPLSVRAIQDIVEKYTKAYG--KRMSPHKLRHTLANKLYMEEKDSLQV 323

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              LGH    T  +YT +      D +  I
Sbjct: 324 MQQLGHTSQDTALLYTQLGETTIKDSLGRI 353


>gi|158340058|ref|YP_001521228.1| phage integrase family protein [Acaryochloris marina MBIC11017]
 gi|158310299|gb|ABW31914.1| phage integrase family protein [Acaryochloris marina MBIC11017]
          Length = 324

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/306 (18%), Positives = 113/306 (36%), Gaps = 14/306 (4%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLI--FLAFYTEEKI 58
           ME + +P   +  L     + L +L  ++  S  T ++Y  D   F    F    T E +
Sbjct: 1   MELDAIPTPPASALKILENDVLSDLLRDKR-SPSTRRAYRKDLTDFFRKMFAEDPTPEMV 59

Query: 59  TI--QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
            +     R  +   +  +       ++ + ++ R LS ++S + Y ++           +
Sbjct: 60  GLFLGMDRHEALQLVARYKGILIELELAEATVNRRLSALRSLVSYARRAGQC----TWGL 115

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
            ++K    +    +           +L        +  R+ AIL LL+   LR  E    
Sbjct: 116 EDIKGEKVI-AYRDTSGVDLEDFQKMLAIPDRETQLGKRDYAILALLWETALRRGELNRC 174

Query: 177 TPQNIMDDQSTLRIQGKGD---KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
              +   ++  L IQGKG    K R+     S              + +  + + L    
Sbjct: 175 NVGDWEPEEKALWIQGKGRGTQKERVTVGNVSAIALEDWLSTRKHLEDDDPLIVALDIVH 234

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRL 292
            G+ L+     + +R +    G+    + H +RHS  T  L   GG++R++Q +  H + 
Sbjct: 235 WGQRLSTTSIYKVVRNIATKAGISKVMSPHRVRHSSITAALDATGGNVRAVQQLSRHAKP 294

Query: 293 STTQIY 298
            T   Y
Sbjct: 295 ETVMRY 300


>gi|297374655|emb|CBL42942.1| phage integrase family protein [Candidatus Magnetobacterium
           bavaricum]
          Length = 324

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/300 (19%), Positives = 113/300 (37%), Gaps = 35/300 (11%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +  + +L+  +  R  +  T +  E   R+    +          + I  +    +  
Sbjct: 58  LQEFVKAYLEWCQSNR--AGRTCERAELALRKLTEVVGKN-------KLIADIKKKNMDD 108

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++   + K    ++   +  IK+   +  +R+    +     + LK  N++PR L+E Q
Sbjct: 109 YVAYCTSIKNKPTTINIEIRHIKAAFSWAVEREYLKTNPFAGYKQLKYQNTIPRFLSENQ 168

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              +         +     +     I  L    G R +E  ++   +I  D   +  + K
Sbjct: 169 IQDV---------YTAIGDNKTYRLIFALYIHTGARRNEIQNIKWSDIKPD-GIIFEKTK 218

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
             + R +P    ++  + EY        N               + P      ++   + 
Sbjct: 219 TYRSRKIPTSKGLKAILSEYDRGIGQIFN---------------ITPSHISHVMKDYFKK 263

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+      H LRH+FA+ L+  G DLR+IQ +LGH   STT IY +++     D +  I
Sbjct: 264 AGIG-HFKLHDLRHTFASLLVQAGIDLRTIQVLLGHTSYSTTLIYAHLSQNQLQDAIDHI 322


>gi|317495285|ref|ZP_07953655.1| phage integrase [Gemella moribillum M424]
 gi|316914707|gb|EFV36183.1| phage integrase [Gemella moribillum M424]
          Length = 299

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/284 (20%), Positives = 123/284 (43%), Gaps = 11/284 (3%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K   ++ + LE ++  S  T+ SY+ D R+  ++L    E   +I+    L+   I  ++
Sbjct: 4   KLLNDFREYLENKKKFSMNTINSYDRDLRKIFLYL---VEMGYSIEEYSWLNEELITRYL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
              + +     +L R++S +  F++YL   ++ +    +++   K           ++  
Sbjct: 61  GYLKEKDYSSATLSRTISTVHIFIEYLYNTRLISNKINIDVHVDKDDQHNLIIFTRQEIA 120

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            ++D           W+D R+ AI  L Y  G++ +E ++L  +++      L+ + K  
Sbjct: 121 KILDI------DTKNWMDYRDKAIFELSYSIGIKPTECINLELKDVNTTIGYLKYKKKEG 174

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
             R V L      AI  Y +    +  ++  +  LF    G+ ++   F +  ++ ++ L
Sbjct: 175 Y-RTVALNKESTDAIKNYIEELKKEYPDIEDESKLFLNHDGEGISRQGFWKIFKKRQQDL 233

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           GL         R+S A HLL +      +Q +LG   + + ++Y
Sbjct: 234 GLEKELNTMNFRNSLAIHLLEDKVPAEEVQELLGLKNIHSLKLY 277


>gi|134100181|ref|YP_001105842.1| tyrosine recombinase XerC [Saccharopolyspora erythraea NRRL 2338]
 gi|291006600|ref|ZP_06564573.1| tyrosine recombinase XerC [Saccharopolyspora erythraea NRRL 2338]
 gi|133912804|emb|CAM02917.1| tyrosine recombinase XerC [Saccharopolyspora erythraea NRRL 2338]
          Length = 398

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/356 (18%), Positives = 121/356 (33%), Gaps = 75/356 (21%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT------------------ 59
           R+ + + L I    S  T  +Y  D    L ++  Y     T                  
Sbjct: 17  RERFAEFLRI--YASLNTRLAYATDLGIPLEWVPGYRPPDPTRRRGRARRTQPTGLEWLT 74

Query: 60  ------IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLK-YLKKRKITTESN 112
                   +   +    +  ++++       D +  R LS + +F + YL +  +   + 
Sbjct: 75  WCVRNGFDSFVDIRVEHVERWLAELAEAGYRDATRARMLSAVSAFYRKYLMREGLAEHNP 134

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVD-----NVLLHTSHETKWIDARNSAILYLLYGCG 167
              +    +  + P     +  +   +      +      + +    R+ A++ +L G G
Sbjct: 135 AALVDRAAQHLNRPGGTPSQTTMWSFEACRALLLAACLLADHRRDGPRDRAMVEILVGTG 194

Query: 168 LRISEALSLTPQNIM----DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC------ 217
           +R  E + +   +         ++LR+ GKG K R+V L P V  A+  Y  +       
Sbjct: 195 VRAEELVGVNLDDYDRPTPGGSASLRVHGKGAKDRLVALAPPVADAVEAYLAVRLPPTVP 254

Query: 218 --PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR------------------------ 251
             P       + PLF    G  ++    Q  +R+L                         
Sbjct: 255 ALPGHTGPATREPLFLTRTGARVHVSHVQAVLRRLCTTFAPDPDAPPPRARWLRDLLATE 314

Query: 252 RYLGLPLS-------TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           R   +             H+ RHS+ATH  + G + R +Q  LGH  LSTT+ Y +
Sbjct: 315 RAAFIAEHLAPLRDSIHPHSARHSYATHAKNRGAEARQVQKDLGHTSLSTTEGYLH 370


>gi|228989062|ref|ZP_04149089.1| Integrase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228770690|gb|EEM19228.1| Integrase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 380

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 73/355 (20%), Positives = 136/355 (38%), Gaps = 54/355 (15%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE------ 56
            NN+P  V           ++ LE++  LS  TL +Y  +  +F  ++            
Sbjct: 36  KNNMPWYV-----------IEYLEMKTALSPATLYAYITEFEKFFKWIILKRLAVVNGNV 84

Query: 57  -----KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111
                 I I+T++ L   ++  F    + + I  R++ R+ S +KS  KYL +       
Sbjct: 85  VTNITDIPIETLQTLPLNDVNRFHMYLQGEGIETRAINRTFSALKSLFKYLAQNSEDEHG 144

Query: 112 NILNMRNLKKSNSLPR-----ALNEKQALTLVDNVLLHTSHETKWIDAR----------- 155
                RN+ +   L +     A    +   ++ N     +     I+             
Sbjct: 145 KSYLSRNVMEKIELHKEKVDAAARADEVANIIFNDNEDVAFLRFLINDYATILKETSTRK 204

Query: 156 ----------NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
                     + A++ L+ G GLR+SE  SLT  +I   Q T+++  KG+K   +    S
Sbjct: 205 YNYFLRDKERDIALISLILGTGLRVSELASLTLSSINFRQGTIKVTRKGNKKSSILATKS 264

Query: 206 VRKAILEYYDLCPFD-LNLNIQLPLFRGI---RGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
               + EY  +     +    +  LF      +   L+    Q  + +           +
Sbjct: 265 CLDDVQEYMKVRLEKYMCPPEEDILFVTRYQGKYTQLSVRAIQNLVEKYSSA--FDEKRS 322

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            H LRH++AT+      DL  ++  LGH  +  T IYTN+N++   + +  +  +
Sbjct: 323 PHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAIDRLEKR 377


>gi|229073648|ref|ZP_04206763.1| Tyrosine recombinase [Bacillus cereus F65185]
 gi|228709503|gb|EEL61562.1| Tyrosine recombinase [Bacillus cereus F65185]
          Length = 358

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/330 (20%), Positives = 124/330 (37%), Gaps = 37/330 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEI 71
            + +++  E+    S  TL +Y  D R F  +L           + I+   +  L   ++
Sbjct: 27  IEEFVEYKELHD-ASPSTLLNYVYDFRVFFNWLLSEQVIELKPIKDISFADLENLKKKDV 85

Query: 72  RAFISKRR-TQKIGDRSLKRSLSGIKSFLKY------------------LKKRKITTESN 112
             F+   +  Q + + S+ R +S +KS  KY                  + K +I  +  
Sbjct: 86  ENFMRFLKLQQNMQNSSVNRKISALKSLFKYLTSLSENEDGECYFYRNVMAKIEIHKDKE 145

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-----RNSAILYLLYGCG 167
            LN R  +  + +    ++++ L  V      +  + +         R+ AIL L  G G
Sbjct: 146 TLNARAKRMRSKIFHNNDDQEFLNYVKYEHEKSLTKHQLFYFLRDKDRDVAILSLFLGSG 205

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           +R+SE   L  ++I   +  + +  KG+K   V + P     + +Y ++         +L
Sbjct: 206 IRVSELADLRMEDINLKERLIDVIRKGNKEDSVWITPIALNDLEKYMEIRDNKYAPGKEL 265

Query: 228 P-LFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             +F         PL+    Q  + +  +  G     + H LRH+ A  L     D   +
Sbjct: 266 KNVFLSKYKHTAQPLSVRAIQDIVEKYTKAYG--KRMSPHKLRHTLANKLYMEEKDSLQV 323

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              LGH    T  +YT +      D +  I
Sbjct: 324 MQQLGHTSQDTALLYTQLGETTIKDSLGRI 353


>gi|23320701|gb|AAN16072.1| integron integrase [uncultured bacterium]
          Length = 292

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/304 (21%), Positives = 123/304 (40%), Gaps = 60/304 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRS 87
           R LS+ T ++Y    R+++ F +             ++  + I AF++     Q++   +
Sbjct: 11  RHLSRRTEEAYRFWIRRYIYFHSKRHP--------SEVGPSGIVAFVNHLAANQQVAAST 62

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++ + +    + +   +I     ++ +R +++   LP  L+  +  +++  ++     
Sbjct: 63  QSQAFNALLFLYRDVLDVEIGA---LVGLRRIQRLQRLPVVLSIDEVRSVLLQMVGTP-- 117

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSV 206
                      I  LLYG GLRI+EA++L  ++I     T+ ++G KG K R   L   +
Sbjct: 118 ---------RLIAELLYGTGLRITEAMTLRIKDIDFAARTITVRGGKGGKDRATLLPSKL 168

Query: 207 RK----------------------------AILEYYDLCPFDLNLNIQLPLFRGIRG--- 235
           R+                            A+   Y L   + +     P          
Sbjct: 169 REPLHRHVLRVLALHKQDCLQGRGHAPLPGALHRKYPLASRNPSWQFVFPSRVIRNCPES 228

Query: 236 -----KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
                   +  + QR  R       +    + HTLRHSFATHLL++G D+R+IQ +LGH 
Sbjct: 229 GRQLRWHASETMVQRAFRNTLALAEVRKHASVHTLRHSFATHLLADGTDIRTIQLLLGHR 288

Query: 291 RLST 294
            L T
Sbjct: 289 SLKT 292


>gi|157377375|ref|YP_001475975.1| phage integrase [Shewanella sediminis HAW-EB3]
 gi|157319749|gb|ABV38847.1| phage integrase [Shewanella sediminis HAW-EB3]
          Length = 309

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/284 (21%), Positives = 111/284 (39%), Gaps = 19/284 (6%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
                  L    +  E  +       L+Y +I      +  +    R++   L  +K+ +
Sbjct: 23  RSQLNTVLKLFKWKGE--VEALPFHTLNYAQIEYVKRHKLDEGKSPRTVNLVLFALKAIV 80

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLP----RALNEKQALTLVDNVLLHTSHETKWIDAR 155
           K      +  +     ++ +K+    P    +AL+      L+    L    + ++I  R
Sbjct: 81  KTGFLMGVVDDVQWRQVQAVKRLPINPSSRGKALSSSSVGQLITICYL----DKRYIGKR 136

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY 214
           +  IL L    GLR  E  +LT  +I  D+ TL ++ GKG K R  P+       I  + 
Sbjct: 137 DCCILALFLSTGLRRFELANLTVSDIHLDKRTLTVKSGKGKKPRKQPIPTWALTYIDNWL 196

Query: 215 DLCPFDLNLNIQLPLFRG--IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
            +       ++  P++       + L+     + ++  R      ++ + H LR +F T 
Sbjct: 197 RVRTHQPG-DLFNPIWNNVIKHDRGLSSAALYQIVK-ARTLAATGITISPHDLRRTFITE 254

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           LL+   DL +   + GH  ++TTQIY     K     M E  DQ
Sbjct: 255 LLNQKVDLSTASKLAGHANVTTTQIY----DKRDESVMREAIDQ 294


>gi|206972881|ref|ZP_03233803.1| integrase family protein [Bacillus cereus AH1134]
 gi|206731765|gb|EDZ48965.1| integrase family protein [Bacillus cereus AH1134]
          Length = 358

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/330 (20%), Positives = 124/330 (37%), Gaps = 37/330 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEI 71
            + +++  E+    S  TL +Y  D R F  +L           + I+   +  L   ++
Sbjct: 27  IEEFVEYKELHD-ASPSTLLNYVYDFRVFFNWLLSEQVIELKLIKDISFADLENLKKKDV 85

Query: 72  RAFISKRR-TQKIGDRSLKRSLSGIKSFLKY------------------LKKRKITTESN 112
             F+   +  Q + + S+ R +S +KS  KY                  + K +I  +  
Sbjct: 86  ENFMRFLKLQQNMQNSSVNRKISALKSLFKYLTSLSENEDGECYFYRNVMAKIEIHKDKE 145

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-----RNSAILYLLYGCG 167
            LN R  +  + +    ++++ L  V      +  + +         R+ AIL L  G G
Sbjct: 146 TLNARAKRMRSKIFHNNDDQEFLNYVKYEHEKSLTKHQLFYFLRDKDRDVAILSLFLGSG 205

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           +R+SE   L  ++I   +  + +  KG+K   V + P     + +Y ++         +L
Sbjct: 206 IRVSELADLRMEDINLKERLIDVIRKGNKEDSVWITPIALNDLEKYMEIRDNKYAPGKEL 265

Query: 228 P-LFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             +F         PL+    Q  + +  +  G     + H LRH+ A  L     D   +
Sbjct: 266 KNVFLSKYKHTAQPLSVRAIQDIVEKYTKAYG--KRMSPHKLRHTLANKLYMEEKDSLQV 323

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              LGH    T  +YT +      D +  I
Sbjct: 324 MQQLGHTSQDTALLYTQLGETTIKDSLGRI 353


>gi|253577885|ref|ZP_04855157.1| integrase [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850203|gb|EES78161.1| integrase [Ruminococcus sp. 5_1_39BFAA]
          Length = 323

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 100/254 (39%), Gaps = 22/254 (8%)

Query: 34  LTLQSYECDTRQFLIFL-------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
            T  SY  D R F  FL         Y+ +  T+  + QL   +I  +    +  K GD+
Sbjct: 53  KTRISYAYDIRIFFQFLLDENPAFKDYSMKDFTVDVLDQLKAIDIEEYQEYLKVYKNGDK 112

Query: 87  S-------LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           +       LKR +S ++SF  Y  K +    +  + +   K        L+  +   L++
Sbjct: 113 TETNGERGLKRKISALRSFYAYYYKHEFIQTNPTVLVDVPKTHEKNIIRLDADEVAMLLE 172

Query: 140 NVLLHTSHET-------KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           ++       T       +    R+ AI+ LL G G+R+SE + L  +++    + +++  
Sbjct: 173 HIEHCGDELTGQKRVYYEKTKERDLAIVTLLLGTGIRVSECVGLDVEDVDFKNNGIKVTR 232

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG    +V     V KA+ +Y ++    +     +  LF   + K +     +  +++  
Sbjct: 233 KGGNEMVVYFGHEVEKALKKYLEVRKNIVPVAGHEHALFYSTQRKRIGIQAVENLVKKYA 292

Query: 252 RYLGLPLSTTAHTL 265
             +     +   + 
Sbjct: 293 GAITTTKKSHHTSF 306


>gi|284031468|ref|YP_003381399.1| integrase family protein [Kribbella flavida DSM 17836]
 gi|283810761|gb|ADB32600.1| integrase family protein [Kribbella flavida DSM 17836]
          Length = 318

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 64/288 (22%), Positives = 106/288 (36%), Gaps = 15/288 (5%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  T  +Y  D        A  T++  ++Q +  L+   +RA             S+ R+
Sbjct: 20  SPHTTAAYRRDL---AGITALLTDDPDSLQ-VEDLTAPALRAAFGAFAD-GHAKSSVLRA 74

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN-EKQALTLVDNVLLHTSHETK 150
            S    FL +     +   + +  +   K     P+ L  E     L+            
Sbjct: 75  WSTWNQFLTFCVSDGLLAGNPMGAVARPKTPPLSPKPLRGEDTPERLLQAAADGVRRGRD 134

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
               R+  ++ L    GLR +E   LT  +      +  L + GKG + R +P+ P + +
Sbjct: 135 PWPERDVLVIALGLVAGLRSAEMRMLTADSLAGRPGEMRLHVHGKGSRDRSIPVEPIMER 194

Query: 209 AILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL----PLSTT 261
            I  Y D C              L     G P+  G  +  ++   R+ GL    P+   
Sbjct: 195 IIAAYLDSCARRFPRKRFGRSAKLLLDREGSPIGRGGLEYLVKSCYRWAGLHDRVPVGAN 254

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            H LRH+FAT L  +G     I ++LGH  L+T+Q Y     +     
Sbjct: 255 LHALRHTFATRLAEDGATASEIMALLGHASLATSQNYIEATGREQRAA 302


>gi|261368880|ref|ZP_05981763.1| site-specific recombinase, phage integrase family [Subdoligranulum
           variabile DSM 15176]
 gi|282568975|gb|EFB74510.1| site-specific recombinase, phage integrase family [Subdoligranulum
           variabile DSM 15176]
          Length = 391

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/333 (20%), Positives = 125/333 (37%), Gaps = 47/333 (14%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P   +  L    ++WL+++  ++ L+  T   Y  D +     L      K+T      L
Sbjct: 66  PVNHAMTLAAYTEHWLRDIAPDK-LAAST---YSRDQQDIRRILPALGHYKLT-----DL 116

Query: 67  SYTEIRAFISKRRT-------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
               IRAF    R+       Q + +RS++   + + S L         T +    +   
Sbjct: 117 RKETIRAFYEAMRSEPKLTDGQPLSERSVEGLHNTLCSILSGAVDEGYLTHNPAWRVYKP 176

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K         +E+    ++  +   +         +      L+   G+R  EA  L   
Sbjct: 177 KGVRKERPVADEETVQKMIAALETQS--------MKYEVYFKLVLATGMRRGEACGLRWS 228

Query: 180 NIMDDQSTLRIQ----------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLN- 222
           +I     T+ +Q                      R V +   + K +  +   C + +  
Sbjct: 229 DIDWRHRTIHVQRTVVKLSGQKIFTKEPKTASGNRRVYISKEMCKLLKAWKQECAWQMEQ 288

Query: 223 -----LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
                L  +  LFR   G P+ P  F    +++ +  GLP + + H+LRH+ A+ L++ G
Sbjct: 289 AEGQTLTEEDYLFRQPSGDPMVPTTFTFRFKKILKENGLPQNLSVHSLRHTNASLLIAQG 348

Query: 278 GDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDW 309
            D+R++  +LGH + STT  IY +   K   + 
Sbjct: 349 VDVRTVAGLLGHSQPSTTLDIYAHAFDKTKREA 381


>gi|17232918|ref|NP_489456.1| integrase-recombinase protein [Nostoc sp. PCC 7120]
 gi|17134908|dbj|BAB77464.1| integrase-recombinase protein [Nostoc sp. PCC 7120]
          Length = 339

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/282 (19%), Positives = 104/282 (36%), Gaps = 15/282 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE----IRAFISKRRT 80
           L  +R     T ++YE D R F + +        ++     L   +    +  + +K   
Sbjct: 42  LADKRN--PNTRRAYEKDLRDFFVKMTLLPPTGDSVLEFLHLQREQAVMVVLKYKAKLIA 99

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             + + ++ R L+ +KS  K  +K  +   S + ++        +    + +   +    
Sbjct: 100 SGVREATINRRLAALKSLAKMGRKLGVCNYS-LEDVE----GEKVKAYRDTRGVDSKTIA 154

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--QGKGDKIR 198
           ++L        I  RN AI  +L+G  LR  E   L   +       LR+  +GKG    
Sbjct: 155 LVLQQFDRETLIGKRNYAIFLVLWGLALRRQEICQLNVGDFDFYGRKLRVLGKGKGTNEE 214

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
            + +   V  A+ ++         +L I   L     G  L      + +    +  G+ 
Sbjct: 215 YLDMSKDVAAALADWLIARGDLKPDLPIFTALDFHNSGHRLTTDAIYKIVSAAFKKAGVK 274

Query: 258 LSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
              + H +RHS  T  L    G++R +Q +  H    T  IY
Sbjct: 275 KPMSPHRVRHSAITAALDATDGNIRKVQKLSRHADPRTLMIY 316


>gi|228918520|ref|ZP_04081963.1| Tyrosine recombinase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228949462|ref|ZP_04111716.1| Tyrosine recombinase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228810185|gb|EEM56552.1| Tyrosine recombinase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228841136|gb|EEM86335.1| Tyrosine recombinase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 358

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/330 (20%), Positives = 124/330 (37%), Gaps = 37/330 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEI 71
            + +++  E+    S  TL +Y  D R F  +L           + I+   +  L   ++
Sbjct: 27  IEEFVEYKELHD-ASPSTLLNYVYDFRVFFNWLLSEQIIELKPIKDISFSDLENLKKKDV 85

Query: 72  RAFISKRR-TQKIGDRSLKRSLSGIKSFLKY------------------LKKRKITTESN 112
             F+   +  Q + + S+ R +S +KS  KY                  + K +I  +  
Sbjct: 86  ENFMRFLKLQQNMQNSSVNRKISALKSLFKYLTSLSENDEGECYFYRNVMAKIEIHKDKE 145

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-----RNSAILYLLYGCG 167
            LN R  +  + +    ++++ L  V      +  + +         R+ AIL L  G G
Sbjct: 146 TLNARAKRMRSKIFHNDDDQEFLNYVKYEHEKSLTKHQLFYFLRDKDRDVAILSLFLGSG 205

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           +R+SE   L  ++I   +  + +  KG+K   V + P     + +Y ++         +L
Sbjct: 206 IRVSELADLRMEDINLKERLIDVIRKGNKEDSVWITPIALNDLEKYMEIRDNKYAPGKEL 265

Query: 228 P-LFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             +F         PL+    Q  + +  +  G     + H LRH+ A  L     D   +
Sbjct: 266 KNVFLSKYKHTAQPLSVRAIQDIVEKYTKAYG--KRMSPHKLRHTLANKLYMEEKDSLQV 323

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              LGH    T  +YT +      D +  I
Sbjct: 324 MQQLGHTSQDTALLYTQLGETTIKDSLGRI 353


>gi|255690723|ref|ZP_05414398.1| putative Na+/H+ antiporter NhaA [Bacteroides finegoldii DSM 17565]
 gi|260623758|gb|EEX46629.1| putative Na+/H+ antiporter NhaA [Bacteroides finegoldii DSM 17565]
          Length = 536

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 69/308 (22%), Positives = 123/308 (39%), Gaps = 17/308 (5%)

Query: 6   LPEIVSFELLKER-QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           LPE  S  +   R   +L +L   R  S   ++        F   +    +E        
Sbjct: 231 LPESGSPSISDIRINEYLNHLAY-RRYSHAYIKGRRYILTYFYKIIEKENQEHP------ 283

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--S 122
            L+  +I  +I      K+   +LK  L  I+ +L+Y  ++          +   K    
Sbjct: 284 -LTLEDIDKYIEYYTINKVQRNTLKEYLCCIRVYLRYAVEKGWCITDLDKALITPKVYSE 342

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            +LP  L   +   L+  V      +T    +R+ AI  LL   GLR SE  +L   +I 
Sbjct: 343 ENLPSFLPWNKVQKLLQTV----KEQTGKSASRDYAIFMLLAMYGLRCSEVANLKISDID 398

Query: 183 DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
             +  + I + K  + +++PLL +V +AI+ Y      +   +  L        +P++  
Sbjct: 399 WRKEQVYIKRAKNCRPQVLPLLHNVGEAIIAYLKQGRPNDIGSDSLFFCTPAPIRPISCT 458

Query: 242 VFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                + +  +   +       H LRHS AT L++ G  L+ +  +LGH  +  T+IY  
Sbjct: 459 AIASVVYRYLKSSEMDVRHKGPHCLRHSHATFLINEGQTLKDVGDLLGHKSMEATRIYAK 518

Query: 301 VNSKNGGD 308
           V+  +  D
Sbjct: 519 VDLNSLRD 526


>gi|47060319|ref|NP_665769.2| ANL28 [Synechococcus elongatus PCC 7942]
 gi|81230370|ref|YP_398752.1| integrase/recombinase [Synechococcus elongatus PCC 7942]
 gi|51338807|sp|Q8KUV2|XERC_SYNE7 RecName: Full=Tyrosine recombinase xerC
 gi|47059650|gb|AAM81156.2|AF441790_27 ANL28 [Synechococcus elongatus PCC 7942]
 gi|81170342|gb|ABB58680.1| integrase/recombinase [Synechococcus elongatus PCC 7942]
          Length = 320

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/302 (22%), Positives = 121/302 (40%), Gaps = 18/302 (5%)

Query: 8   EIVSFELLKERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
            +V    +   Q+W  LQ L +E   S  T ++Y+ D R F  +          I     
Sbjct: 6   AVVESRAIAPVQDWDVLQML-LEDHRSPNTRRAYDRDLRLFFAWWLDEDPHPEAIAYWLS 64

Query: 66  LSYTE----IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           L  +E    +  + +  R + + + ++ R L+ +KS +++ ++          ++ ++K 
Sbjct: 65  LPQSEAIAVVLRWKASMRDRGLAEATINRRLAALKSLVRFSRRLGRC----TFSLEDVK- 119

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
            + +    +           LL   +      AR+ AIL LL+   LR SEA+    Q++
Sbjct: 120 GDRVQSYRDTTGTTPERFRELLALPNRQTAKGARDYAILRLLWENALRRSEAVQTRVQDL 179

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF----RGIRGKP 237
                 L I GKG   R    +    + +    D   +      + PLF    R   G+ 
Sbjct: 180 EQGDRRLWILGKGKG-RQRLPVSLSVEMVQALQDWLRWHPKAEPEQPLFTALDRRSYGQQ 238

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQ 296
           L+       +++    + L    + H +RHS  T  L   GG++R +Q +  H RL T Q
Sbjct: 239 LSDQAVYLLVKRSAEAIKLGKRLSPHRIRHSAITAALDATGGNIRLVQKLSRHSRLETLQ 298

Query: 297 IY 298
            Y
Sbjct: 299 RY 300


>gi|307243898|ref|ZP_07526023.1| site-specific recombinase, phage integrase family
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492720|gb|EFM64748.1| site-specific recombinase, phage integrase family
           [Peptostreptococcus stomatis DSM 17678]
          Length = 357

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 68/350 (19%), Positives = 131/350 (37%), Gaps = 42/350 (12%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGL-SKLTLQSYECDTRQFLIFL-------AF 52
           M+   L E      +KE   +L      RG  +  T ++Y  D + F  ++         
Sbjct: 1   MDECMLLESQLPPFMKEYFIYL------RGAVAVTTRRAYLNDIKFFCTYIIDSGLYTNA 54

Query: 53  YTEEKITIQTIRQLSYTEIRAFI------------SKRRTQKIGDRSLKRSLSGIKSFLK 100
                I+++   ++S  +I  F+            S R   +  ++SL R  S + +  K
Sbjct: 55  EKLSDISLEDFAEISARDINIFLGDYCNRYYKEVNSDRVLYENNNKSLARKKSSLSTLFK 114

Query: 101 YLKKRKITTESNILNMRNLKKSNSLP---RALNEKQALTLVDNVLLHTSHETKWIDAR-- 155
           +L +     +        +K     P   + L   +  T++D V        K  D    
Sbjct: 115 FLYRNGQLKDDISGGFNPIKLPKPQPDAIKRLEIDEVATMLDVVENGNGLTDKEKDYWLK 174

Query: 156 ----NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL---LPSVRK 208
               + AIL L    GLR++E   L   +    +    I  K  K  ++P+      V K
Sbjct: 175 TKLRDKAILVLFITYGLRLNELRELNISSFNFSRGEFMIYRKRGKEVLMPINEACERVVK 234

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL---GLPLSTTAHTL 265
             ++Y      D+       LF  ++ K +     +  +++              + H L
Sbjct: 235 DYIDYERPKSSDIEEEYLDALFLSLQKKRMTSRSIRDLVKKYTSIAMKTSRDKGYSPHKL 294

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           R + AT L+  G  +  +Q+++ H  ++TTQ+Y   + KN    ++E ++
Sbjct: 295 RATAATSLIETGFSIYDVQNLMDHDNVTTTQLYA-AHRKNLKRDIVENFN 343


>gi|323139749|ref|ZP_08074786.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322394986|gb|EFX97550.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 331

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/291 (18%), Positives = 111/291 (38%), Gaps = 22/291 (7%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T ++Y     +FL +      E+  + +I  +    I A++    T+     + K+ L
Sbjct: 51  AHTRRAYGRSIGEFLAWC-----EQRGLASIIDIDPLHIGAYVEAL-TRSHSAPTAKQRL 104

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR--ALNEKQALTLVDNVLLHTSHETK 150
           + I+    +L   +I   +   ++R  K    + +   L+ ++   L+D++       T 
Sbjct: 105 AAIRMLFDWLVTGQIIPTNPAASVRGPKHVVKVGKTPVLDPEETRILLDSI-----DVTT 159

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKA 209
            +  R+ A++ L+     R+  AL++  +++      L ++  +    R         ++
Sbjct: 160 TVGLRDRALIALMVYSFARVGAALAMKVEDVYVQNRRLWVRLHEKGGKRHEMPCHHNLES 219

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRG-------KPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            L  Y    + L  + +  LFR I          PL        IR+     G+      
Sbjct: 220 YLHAYIDGCY-LAADPKAHLFRTIGRGTGELTLTPLPQANAYAMIRRRALAAGIATKVGN 278

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           H+ R +  T  L NGG L    S+  H    TTQ+Y     +   D +  +
Sbjct: 279 HSFRATGITAYLKNGGTLEKAASMANHASTRTTQLYDRRRDEMSLDEVERV 329


>gi|147677726|ref|YP_001211941.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
 gi|146273823|dbj|BAF59572.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
          Length = 317

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 60/299 (20%), Positives = 110/299 (36%), Gaps = 23/299 (7%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S +  +  + +L + + E G +  TL  Y+    +   F   Y E     + +R+    
Sbjct: 10  LSVKWEQALEEFLLHKKAE-GRAARTLFDYKA---RITPFFQAYPEAWPDYEALRRA--- 62

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R ++++         S    L  ++SF  +     +   +    +   K         
Sbjct: 63  -VRLYLAQF--TGKAPASYNLPLQYLRSFFSWCMAENMLHANPTEGIAKRKDEGK----- 114

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
             ++        LL       +   R+ A++ L    G+R  EAL+L P +    Q  + 
Sbjct: 115 -AREIPEDTLKNLLALPDRRTYAGIRDYALILLQVDTGIRPGEALNLKPSDFNIPQLEVV 173

Query: 190 IQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           I     K    R     P   KAI    D+ P D   N  +P+F    GK +    +   
Sbjct: 174 IPRETAKTRTQRTAVYSPVTAKAIKRLLDVRPPD--WNDSVPVFASQDGKRMLETSWANR 231

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +R   + +G       + LRH+ A   L NG     +Q  LGH  +  T+ Y  +  ++
Sbjct: 232 LRAYGKRIG--ADLQPYMLRHTSAIMALRNGATAFFVQKQLGHSDMQMTKRYCRLVEED 288


>gi|288561514|ref|YP_003428920.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4]
 gi|288548146|gb|ADC52028.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4]
          Length = 362

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 66/329 (20%), Positives = 136/329 (41%), Gaps = 41/329 (12%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY-----TEEKITIQTIRQLSYTEIRAF 74
            ++ +    R LS  +L +Y  D + F  ++          +++ ++ + +L+  ++ +F
Sbjct: 27  EFIDHRR--RKLSSSSLMNYCHDFKIFFNWIISESIYQGNIKEVPLEIMEKLTVQQMESF 84

Query: 75  ISKRRT-QKIGDRSLKRSLSGIKSFLKYLKK-------RKITTESNILNMRNLKKSNSLP 126
           +       +  + ++ R LS +KS   YL+            + + +  +      +S+ 
Sbjct: 85  LGFLEYVLENKEITVNRKLSALKSLFNYLQNIAETPDLNPYISRNVMTKIDFNVMKDSIE 144

Query: 127 RALNEKQALTLV----DNVLLHTSHETKWID--------------ARNSAILYLLYGCGL 168
              N+ +   L+    +      SH+   I+               R++AI+ L+ G GL
Sbjct: 145 TTANKMEGKILMGDEYEAFRQFISHDYGQINKNNKKIFNFHILNKERDTAIISLILGSGL 204

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL- 227
           R+SE ++L   +I  ++ T R   KG+K + V         + EY  +      +   + 
Sbjct: 205 RLSEVVNLDLADIDFNKFTARAIRKGNKEQFVYFSKLAMDDLQEYLTVRTERYKVEKGVK 264

Query: 228 PLFRGIRGKP------LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
            LF      P      L+    ++ + +     G P S + H LRHSFAT       D+ 
Sbjct: 265 ALFVSAPMGPKGTSRRLSARAIEKMVEKYALAYGKP-SLSVHKLRHSFATRYHREINDVP 323

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            ++  LGH  + TT IYT++ + +  + +
Sbjct: 324 KLRRQLGHSSIQTTMIYTHIKNDDLKNAV 352


>gi|242348058|ref|YP_002995619.1| phage integrase family protein [Aeromonas hydrophila]
 gi|242348136|ref|YP_002995696.1| phage integrase family protein [Escherichia coli]
 gi|224831725|gb|ACN66857.1| phage integrase family protein [Escherichia coli]
 gi|224831877|gb|ACN67008.1| phage integrase family protein [Aeromonas hydrophila]
          Length = 334

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/284 (19%), Positives = 116/284 (40%), Gaps = 16/284 (5%)

Query: 40  ECDTRQFLIFLAFYTE-EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSF 98
                 FL  +A     + +       +    ++A I           ++   L+ +K  
Sbjct: 57  RQTMGSFLNIVAKMIGFQNLRDCAWSSMRRHHVQAVIQILSDSDRAPATINTYLAALKGV 116

Query: 99  LKYLKKRKITTESNILNMRNLK--KSNSLP--RALNEKQALTLVDNVLLHTSHETKWIDA 154
                  K     +  +++ ++  + + LP  RAL + +   L         ++      
Sbjct: 117 ALEAWTMKQIDTDSYQHIKQVRSVRGSRLPNGRALEKHEVRALYFTC----ENDRSSKGL 172

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           R++AIL +L GCGLR SE ++L  + ++  +  LR+ GKG+K RI  +     + ++ + 
Sbjct: 173 RDAAILAVLVGCGLRRSEVVALDMECVITREQALRVLGKGNKERIAYVPDGAWQRLMRWV 232

Query: 215 DLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +    +    L  ++  F  +    +        +   R   GL      H LR +FA+ 
Sbjct: 233 NEVRGEQPGALFQRIRRFDDVTADRMTDQAIYHILETRRIEAGLEK-FAPHDLRRTFASA 291

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +L NG D+ +++  +GH  ++TTQ Y     + G + + +   +
Sbjct: 292 MLDNGEDIITVKDAMGHASVTTTQKY----DRRGDERLKQASRR 331


>gi|197285081|ref|YP_002150953.1| integrase/recombinase [Proteus mirabilis HI4320]
 gi|194682568|emb|CAR42606.1| putative integrase/recombinase [Proteus mirabilis HI4320]
          Length = 330

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 63/300 (21%), Positives = 124/300 (41%), Gaps = 23/300 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L++L  +R  S+ T+ S+     + + F +    +         L    I+A I    
Sbjct: 42  AYLRSLGSKR--SRQTMGSFLTIVAKMIGFSSIKHCQ------WGALRRHHIQAIIDMLS 93

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPR--ALNEKQAL 135
                  ++   L+ +K         K+    +  ++R +K  + + LP+  AL   +  
Sbjct: 94  DADKAPATINTYLAALKGVALEAWAMKLMDTESYQHIRQVKSVRGSRLPKGRALTGHEIR 153

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L          +      R++AIL +L GCGLR SE ++L  ++I        ++GKG+
Sbjct: 154 ALFRCC----EKDHSSKGLRDAAILSVLLGCGLRRSEIVALNYEHIQFRDQAFIVRGKGN 209

Query: 196 KIRIVPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K RI  +     + +  + D      D  L  ++  F  +  + +        +   ++ 
Sbjct: 210 KERISYMPEDTWERVQLWIDEIRGAQDGALFTRIRRFDDVTDERITDQAIYYILETRQQE 269

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+      H LR +FA+ +L NG D+ +++  +GH  + TTQ Y     + G D + + 
Sbjct: 270 SGIDK-FAPHDLRRTFASAMLDNGEDIVTVKDAMGHASIMTTQRY----DRRGDDRLRKA 324


>gi|289423763|ref|ZP_06425558.1| integrase family protein [Peptostreptococcus anaerobius 653-L]
 gi|289155802|gb|EFD04472.1| integrase family protein [Peptostreptococcus anaerobius 653-L]
          Length = 377

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 64/339 (18%), Positives = 131/339 (38%), Gaps = 41/339 (12%)

Query: 13  ELLKERQNWLQNLEIERGL-SKLTLQSYECDTRQFLIFL-------AFYTEEKITIQTIR 64
           +L    +++   L   RG  S  T ++Y  D + FL +L       +  +   I+I   +
Sbjct: 32  QLPSFLRDYFVYL---RGAVSVTTRRAYLMDIKFFLDYLIDTDLYTSAKSVSDISIDDFK 88

Query: 65  QLSYTEIRAFISKRRTQKIGD------------RSLKRSLSGIKSFLKYLKKRKITTESN 112
           ++   +I  FI     +   +            +SL R  S + +  K+L + +      
Sbjct: 89  EIGARDINLFIGDYCNRYYKNVNNDRVLYENNNKSLARKKSSLSTMFKFLFRNEQLDTDI 148

Query: 113 ILNMRNLKKSNSLP---RALNEKQALTLVDNVLLHTSHETKWIDAR------NSAILYLL 163
                 +K     P   + L   +   +++ V        K  D        + AIL L 
Sbjct: 149 TSGFNPIKLPKPQPDAIKRLEIDEVAIMLEAVETGNGLTDKEKDYWLKTKKRDRAILVLF 208

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY---DLCPFD 220
              GLR++E   L   +    +    I  K  K  ++P+  +    + +Y         +
Sbjct: 209 ITYGLRLNELRELNISSFNFSRGEFMIYRKRGKEVLMPINKACETVVKDYIENERPSDDE 268

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP----LSTTAHTLRHSFATHLLSN 276
           ++   Q  LF  ++ K +     +  +++    +G+        + H LR + AT L+  
Sbjct: 269 ISEEYQDALFLSLQKKRMTARSIRDLVKKY-TAIGMNTSRSKGYSPHKLRATAATSLIET 327

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           G  +  +Q+++ H  ++TTQ+Y   + KN    ++E +D
Sbjct: 328 GFSIYDVQNLMDHDNVTTTQLYA-AHRKNLKRDVVENFD 365


>gi|227355496|ref|ZP_03839891.1| integrase/recombinase [Proteus mirabilis ATCC 29906]
 gi|227164292|gb|EEI49181.1| integrase/recombinase [Proteus mirabilis ATCC 29906]
          Length = 330

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 63/300 (21%), Positives = 124/300 (41%), Gaps = 23/300 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L++L  +R  S+ T+ S+     + + F +    +         L    I+A I    
Sbjct: 42  AYLRSLGSKR--SRQTMGSFLTIVAKMIGFSSIKHCQ------WGALRRHHIQAIIDMLS 93

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPR--ALNEKQAL 135
                  ++   L+ +K         K+    +  ++R +K  + + LP+  AL   +  
Sbjct: 94  NADKAPATINTYLAALKGVALEAWAMKLMDTESYQHIRQVKSVRGSRLPKGRALTGHEIR 153

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L          +      R++AIL +L GCGLR SE ++L  ++I        ++GKG+
Sbjct: 154 ALFRCC----EKDHSSKGLRDAAILSVLLGCGLRRSEIVALNYEHIQFRDQAFIVRGKGN 209

Query: 196 KIRIVPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           K RI  +     + +  + D      D  L  ++  F  +  + +        +   ++ 
Sbjct: 210 KERISYMPEDTWERVQLWIDEIRGSQDGALFTRIRRFDDVTDERITDQAIYYILETRQQE 269

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+      H LR +FA+ +L NG D+ +++  +GH  + TTQ Y     + G D + + 
Sbjct: 270 SGIDK-FAPHDLRRTFASAMLDNGEDIVTVKDAMGHASIMTTQRY----DRRGDDRLRKA 324


>gi|46198973|ref|YP_004640.1| transposase [Thermus thermophilus HB27]
 gi|46196597|gb|AAS81013.1| transposase [Thermus thermophilus HB27]
          Length = 391

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 67/319 (21%), Positives = 127/319 (39%), Gaps = 27/319 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKR 78
           ++L+ LE E GL   +++    +    L  L      + +    ++++    +RA + + 
Sbjct: 77  DYLKRLERE-GLRPNSIRLAREELAHALPSLKDPKAHDPLGRMRLQEVKPVHVRAAVDRV 135

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTL 137
                  R++ R L  +K+  +   + ++   +    +R  L K     RAL   +   L
Sbjct: 136 AEAGYAPRTVNRVLMRLKALFREALRLELVARNPAEAVRLRLPKGEKTARALEPHEVARL 195

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK- 196
           ++      S +        + +L L+   GLR  EAL+L  ++I  +   L +     K 
Sbjct: 196 LEAAEASRSKDM-------ALLLRLMLETGLRRGEALALQWRDIDLEAGELTVWRSWTKA 248

Query: 197 --------------IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
                          R VPL   +   +    +     L       LF     KP++P  
Sbjct: 249 GGKGVFSEPKTPTAKRKVPLPRGLLLRLKARREELLERLTPEEVDGLFLVGGVKPVDPDA 308

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           F  Y+R+L    GL      H LRH++AT  LS G  L  +   LGH   + T  +Y ++
Sbjct: 309 FNHYLRRLAEKAGLGR-VRVHDLRHTWATLALSRGVPLEVVSERLGHASPTITLNVYRHL 367

Query: 302 NSKNGGDWMMEIYDQTHPS 320
             +    W++++ +  +P+
Sbjct: 368 LEEERRGWVLDLEELLYPA 386


>gi|310658541|ref|YP_003936262.1| tyrosine recombinase [Clostridium sticklandii DSM 519]
 gi|308825319|emb|CBH21357.1| putative tyrosine recombinase [Clostridium sticklandii]
          Length = 371

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 69/324 (21%), Positives = 126/324 (38%), Gaps = 37/324 (11%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE--------KITIQ 61
           +   L    +++   L+    LS  T  +Y  D   FL +L    E         +ITI+
Sbjct: 28  IETALPHFMKDYFIYLKNAVSLS--TRLAYLEDIEFFLKYLISNDESFIHLNNLSEITIE 85

Query: 62  TIRQLSYTEIRAFISKRRTQKIG------------DRSLKRSLSGIKSFLKYLKKRKITT 109
              +L   +I  +I +  T+ +             +RSL R  S + S  KY+ +     
Sbjct: 86  QFSKLKARDINYYIGEYCTRYLKSINGNDYLFKNDNRSLARKKSSLSSLFKYMYRNNQLE 145

Query: 110 ESNILNMRNLKKSNSLP---RALNEKQALTLVDNVLLHTSHETKWIDAR------NSAIL 160
            +       +K     P   + L   +   ++D V        K           + AIL
Sbjct: 146 NNITDGFNPIKLPKPQPDAIKKLAVDEVAIMLDIVSTGEGLTDKEKIYWEKTKLRDKAIL 205

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
            L    GLR+SE   L   +    +   +I  K  K  ++PL  +++KA+ +Y      +
Sbjct: 206 LLFVTYGLRLSEIQQLNLSSFNYGRDEFKIYRKRSKEALMPLNSTIKKALDDYISCERPN 265

Query: 221 ---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL---GLPLSTTAHTLRHSFATHLL 274
              L+ N +  LF  I+ K L     +  +++              + H LR + A+ L+
Sbjct: 266 SDLLDENNEDALFLSIQNKRLTMKAIRELVKKYTSLAMGTTRDKGYSPHKLRATAASSLI 325

Query: 275 SNGGDLRSIQSILGHFRLSTTQIY 298
             G  +  ++++L H  ++TTQ+Y
Sbjct: 326 DYGFSIYDVKTLLDHENITTTQLY 349


>gi|329766934|ref|ZP_08258462.1| hypothetical protein HMPREF0428_00159 [Gemella haemolysans M341]
 gi|328837659|gb|EGF87284.1| hypothetical protein HMPREF0428_00159 [Gemella haemolysans M341]
          Length = 301

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 58/282 (20%), Positives = 118/282 (41%), Gaps = 11/282 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             N+ + L   +  S  T+ SY+ D ++  ++LA   E   +      L+   I  +I  
Sbjct: 6   LNNFNEYLINRKEFSTNTINSYDRDLKKIFLYLA---ERGYSTDDYSWLNEEFISRYIDY 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R ++    +L R++S +  F++YL   KI      +++   K+ +        ++   +
Sbjct: 63  LREKEYSSATLSRTISTVHIFVEYLWMEKIIPNRINIDVHIDKEEHQDLVIFTRQEISKI 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D            I  R+ AI  L Y  G++ +E ++L  +++      L+ + K    
Sbjct: 123 LDV------KTHNLIGYRDKAIFELSYSIGIKPTECINLELKDVNTTIGFLKYRKKEGY- 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R V L     +AI  Y      +  ++     LF    G+ ++   F +  ++ ++ LGL
Sbjct: 176 RTVALNRESVEAIENYITELKKEYPDIKDDSKLFLNHDGEGISRQGFWKIFKKRQQDLGL 235

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                    R+S A HLL +      +Q +LG   + + ++Y
Sbjct: 236 TKELNTMNFRNSLAIHLLEDKVPAEEVQELLGLKNIHSLKLY 277


>gi|46200178|ref|YP_005845.1| DNA integration/recombination/invertion protein [Thermus
           thermophilus HB27]
 gi|46197806|gb|AAS82218.1| DNA integration/recombination/invertion protein [Thermus
           thermophilus HB27]
          Length = 392

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 67/319 (21%), Positives = 131/319 (41%), Gaps = 27/319 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKR 78
           ++L+ LE E GL   +++  + +    L  L      + +    ++++    +RA + + 
Sbjct: 78  DYLKRLERE-GLRPNSIRLAQEELAHALPSLKDPKAHDPLGRMRLQEVKPVHVRAAVDRV 136

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTL 137
                  R++ R L  +K+  +   + ++   +    +R  L K     RAL  ++   L
Sbjct: 137 AEAGYAPRTVNRVLMRLKALFREALRLELVARNPAEAVRLRLPKGEKTARALEPQEVARL 196

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++      S +        + +L L+   GLR  EAL+L  ++I  +   L +     K 
Sbjct: 197 LEAAEASRSKDM-------ALLLRLMLETGLRRGEALALQWRDIDLEAGELTVWRSWTKA 249

Query: 198 R-----IVPLLPSVRKAILEYYDLCPFDLNLNIQL----------PLFRGIRGKPLNPGV 242
           R       P  P+ ++ +     L         +L           LF     KP++P  
Sbjct: 250 RGKGAFSEPKTPTAKRKVPLPRGLLLRLKARREELLERLTPEEVDGLFLVGGVKPVDPDA 309

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           F  Y+R+L    GL      H LRH++AT  LS G  L  +   LGH   + T  +Y ++
Sbjct: 310 FNHYLRRLAERAGLGR-VRVHDLRHTWATLALSRGVPLEVVSERLGHASPTITLNVYRHL 368

Query: 302 NSKNGGDWMMEIYDQTHPS 320
             +    W++++ +  +P+
Sbjct: 369 LEEERRGWVLDLEELLYPA 387


>gi|167946117|ref|ZP_02533191.1| site-specific tyrosine recombinase XerD [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 223

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 97/222 (43%), Gaps = 10/222 (4%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
             L +ERGLS+ TL +Y+ D  +  ++L     ++     + +    ++  +++    Q 
Sbjct: 2   DALWMERGLSQNTLVAYQSDLSKLSLWLQRQRGKR-----LLEAGQKDLLGYLAVLAQQG 56

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
              RS  R LS ++ F +Y  +  + +      + + K+++ + RA +    L+   +  
Sbjct: 57  RQARSSARLLSCMRQFYQYAVRESLLSADPSAQIESPKRASPVTRAPS----LSARLSSY 112

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
                       R+  +L LLY  GLR+SE + L P+ I   Q  +R+ GKGDK R+VP+
Sbjct: 113 WRPPTWAILQGVRDRTMLELLYATGLRVSELIDLRPEQISLSQGVVRVIGKGDKERLVPM 172

Query: 203 LPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
               +  I  +        L   + + LF     +  +P   
Sbjct: 173 GDEAQSWIERFLRGPRQAILGQRVCIHLFHYSTRQRHDPTGI 214


>gi|260893825|ref|YP_003239922.1| integrase family protein [Ammonifex degensii KC4]
 gi|260865966|gb|ACX53072.1| integrase family protein [Ammonifex degensii KC4]
          Length = 315

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 116/320 (36%), Gaps = 27/320 (8%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           L E +     +  + +  + + + G ++ TL  Y     +F                  +
Sbjct: 7   LSERLQSTWQEVLEEFCLHQQAQ-GKAERTLYDYRAWIGRFFR------RHPDAWGDYER 59

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           L    +  F +    +     +   +   +K F  +  +      + +  ++  ++ +  
Sbjct: 60  LRRAVLEHF-AHLSHK--APATFNMARKYLKLFFAWCVREGYLPANPVDGIKK-RREDGT 115

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           PR ++ +    L+            +   R+ A++      G+R  EAL L P++     
Sbjct: 116 PRPVSLEAVQKLLTAC-----DRKSFTGLRDYALILFQLDTGVRPGEALKLLPEHFNLRS 170

Query: 186 STLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
             + I     K    R V + P   +A+     + P       + P+F    G+P+    
Sbjct: 171 LEVYIPAQVSKTRAARTVVISPQTARAVQRLLAVRP--AAWGSKAPVFCSETGQPMQVSS 228

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +   +  + R  G+    T + LRH+ AT LL  G    ++   LGH  LSTT+ Y  + 
Sbjct: 229 WTHRLALISRRAGV--KVTPYQLRHTAATELLRGGASAFAVARQLGHLHLSTTRRYIQLV 286

Query: 303 SKNGGDWMMEIYDQTHPSIT 322
            ++    +   +D+  P   
Sbjct: 287 EED----LRREHDRASPVAR 302


>gi|317481410|ref|ZP_07940477.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902395|gb|EFV24282.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 410

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 120/289 (41%), Gaps = 29/289 (10%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L  + + RG  K TL+ Y      FL +L     + I +Q I+Q++   +  F+S ++  
Sbjct: 115 LHLISLRRG--KNTLKHYRSCLGNFLYYL-----DMIGVQNIKQITEEHVIRFLSSQQLN 167

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVD 139
           +         LS I+    + ++  I             L+K   +P     ++      
Sbjct: 168 REKT------LSIIRCLFLFWRQENIIDGRFEEFFATYKLRKKERIPSYYTTEEIK---- 217

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR 198
            V+ ++   +  +  RN A++ L    GLR S+ +SL   +I  D   +R++  K  K  
Sbjct: 218 -VIENSVSRSSALGKRNYAMILLASRLGLRASDIMSLKFSDIDWDNDLIRLRIQKTGKTI 276

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL--NPGVFQRYIRQLRRYLGL 256
            +PLL  V  AI++Y          +    +F   R   +     +    I ++ R  G+
Sbjct: 277 ELPLLADVGNAIIDYLRYGRP---ASTSQNIFLSSRAPYIAATQSMVCGNINKIIRLSGV 333

Query: 257 ---PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                    H+LRHS A+++L NG  +  I  +LGH    TT  Y  +N
Sbjct: 334 NIDKKRHGPHSLRHSLASNMLENGATMPIISEVLGHRNTETTMTYLKIN 382


>gi|262204532|ref|YP_003275740.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262087879|gb|ACY23847.1| integrase family protein [Gordonia bronchialis DSM 43247]
          Length = 608

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 61/297 (20%), Positives = 118/297 (39%), Gaps = 23/297 (7%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK----RRTQKIGDR 86
           L   T+   E D R+F  +L     +      ++++   E + ++S     R  + +   
Sbjct: 226 LRPNTVTGIEHDLRRFGSWLTDTHPQIANCAELQRVHIEEFKKWLSTTPTPRTGKPLNRG 285

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLVDNVL 142
           S+K +L  +  F   +        + +  +            LPR L++  A  L+    
Sbjct: 286 SIKNALINLHCFFDRITDWDY-PNAPVRPLVFIGDLPIIDKPLPRFLDDGAATKLLRAAR 344

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRI 199
             T       D  +  I+ LL   G+RISE L LT   ++   +   ++   GK    R 
Sbjct: 345 ADT-------DPLSRLIVELLARTGIRISELLGLTTDAVVQIGTAFWLRIPLGKMHNDRY 397

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +PL P +++ + ++ D       +     L    R  P+        + +     G+   
Sbjct: 398 IPLHPQLKELLDDWIDN-HRPTGIRTSRLLVENHR--PITSHRVTAALDRHAEAAGIG-H 453

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            TAH LRH+ AT  ++ G  L +I ++LGH  L+ T +Y  +  +   +    + ++
Sbjct: 454 VTAHQLRHTLATQAINRGMSLDAIAALLGHKTLAMTMVYARIADRTVAEQYFSVTEK 510


>gi|17227484|ref|NP_478666.1| integrase-recombinase protein [Nostoc sp. PCC 7120]
 gi|17134950|dbj|BAB77505.1| integrase-recombinase protein [Nostoc sp. PCC 7120]
          Length = 339

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 57/282 (20%), Positives = 105/282 (37%), Gaps = 15/282 (5%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE----IRAFISKRRT 80
           L  +R     T ++YE D R F + +        ++     L   +    +  + +K   
Sbjct: 42  LADKRN--PNTRRAYEKDLRDFFMKMTLMPPTGDSVLEFLHLQREQAVMVVLKYKAKLIA 99

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             + + ++ R L+ IKS  K  +K  +   S + ++        +    + +   +    
Sbjct: 100 SGVREATINRRLAAIKSLAKMGRKLGVCNYS-LEDVE----GEKVKAYRDTRGVDSKTIA 154

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--QGKGDKIR 198
           ++L        I  RN AI  +L+G  LR  E   L   +       LR+  +GKG    
Sbjct: 155 LVLGQFDRETLIGKRNYAIFLVLWGLALRRQEICQLNVGDFDFYGRKLRVLGKGKGTNEE 214

Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
            + +   V  AI ++         +L I   L     G  L      + +    + +G+ 
Sbjct: 215 YLDMSKDVAAAIADWLIARGDLKPDLPIFTALDFHNSGHRLTTDAIYKIVASAFKKVGVK 274

Query: 258 LSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
              + H +RHS  T  L    G++R +Q +  H    T  IY
Sbjct: 275 KPMSPHRVRHSAITAALDATDGNIRKVQKLSRHADPRTLMIY 316


>gi|300781921|ref|YP_003739156.1| phage integrase [Erwinia billingiae Eb661]
 gi|308186479|ref|YP_003930610.1| Tyrosine recombinase xerC [Pantoea vagans C9-1]
 gi|299060187|emb|CAX53378.1| phage integrase [Erwinia billingiae Eb661]
 gi|308056989|gb|ADO09161.1| Tyrosine recombinase xerC [Pantoea vagans C9-1]
          Length = 327

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 70/329 (21%), Positives = 127/329 (38%), Gaps = 38/329 (11%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
             S  +L   + WLQ L  + G ++ TL +Y    R +  F +    +        +  +
Sbjct: 4   PPSEHVLLLAERWLQ-LLSDLGRAQATLTAYRNALRHYFAFCSQNGIKP------EKARF 56

Query: 69  TEIRAFISKRRTQ---KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL------ 119
            ++ A+IS +           +L+  LS I+ +  +L    + T + +            
Sbjct: 57  EDLAAYISPQLPGMPFSAASATLQLRLSAIRLWYDFLMYLDLCTVNPLPRSGTPGMLSSG 116

Query: 120 ----KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
                +   LPR  ++ Q    + +              R+  +L L Y   LR SE  S
Sbjct: 117 RGLVPRVVKLPRIPDDAQWQCFLYHAAASP--------LRDRLMLALTYYGALRRSEITS 168

Query: 176 LTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
           L+  +       +RI+    K  + RIV   P+V   +  +           ++  LFR 
Sbjct: 169 LSIDDFDFAHRLIRIRAETTKSRRERIVCYSPAVVPVLAAHLM--QMKRTGIVRGALFRS 226

Query: 233 ----IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
                +G PL+   + + +R+     G+P   + HT RH   THL   G  L  + +  G
Sbjct: 227 ESDRNQGGPLSFWTWSKTVRKWALESGMP-DISTHTFRHLRLTHLARAGWKLHELATYAG 285

Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           H  L+TTQIY +++ ++    M    +  
Sbjct: 286 HRDLTTTQIYIHLSGRDLAARMAGAIETA 314


>gi|332799019|ref|YP_004460518.1| integrase family protein [Tepidanaerobacter sp. Re1]
 gi|332696754|gb|AEE91211.1| integrase family protein [Tepidanaerobacter sp. Re1]
          Length = 297

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 67/308 (21%), Positives = 122/308 (39%), Gaps = 28/308 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  + +L   + + GL++ TLQ YE +   F        ++   ++         +  + 
Sbjct: 4   KHLKMFLLYKKAQ-GLAERTLQDYEYNIGLFFKAYPNALKDDERLE-------MAVLEYF 55

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKSNSLPRALNEKQA 134
           S      +   +       + +F  +LK    I  ++ I +++  +K   LPRA ++++ 
Sbjct: 56  SS--IGHLAPATFNSRRKNLNTFFLWLKDEKGIIEQNPICHIKR-RKEEKLPRA-SDEET 111

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-- 192
           L      LL     T +   R+ A++ L    G+R  EA  L  ++   +   + I    
Sbjct: 112 LA----KLLKAPDITTFAGLRDYALIVLTLDTGIRPGEAFGLLKKDFDLETGQIEIPAEV 167

Query: 193 -KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            K    RI+P+LP    AI E              +P+F    G  L    + R + +  
Sbjct: 168 AKTRTRRILPILPQTVLAIAELIQSRH--KYWPDTVPVFCTENGGKLGKNQWGRRMIEYG 225

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             +G     T + LRHSFA   L N G    +Q +LGH  +  T+ Y  ++  +      
Sbjct: 226 EKIG--KKVTPYQLRHSFALLFLRNKGSAFHLQQMLGHTTMEMTEKYVYLSKSDVD---- 279

Query: 312 EIYDQTHP 319
           E++    P
Sbjct: 280 EVHYTASP 287


>gi|224025070|ref|ZP_03643436.1| hypothetical protein BACCOPRO_01804 [Bacteroides coprophilus DSM
           18228]
 gi|224018306|gb|EEF76304.1| hypothetical protein BACCOPRO_01804 [Bacteroides coprophilus DSM
           18228]
          Length = 418

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 69/323 (21%), Positives = 127/323 (39%), Gaps = 28/323 (8%)

Query: 3   GNNLPEIVSFELLKER-QNWLQNLEIERG-LSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           G   P    FE   +    + + +  ER   S LT+  +    R    FL          
Sbjct: 95  GKPTPRSPMFEFKGDLGIQFNEFICHERRIKSPLTVSKHHLYLRDLYDFLKENN------ 148

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE------SNIL 114
           + +++    +   F+ + + +K   R     +S +++F++Y  +R +  +        IL
Sbjct: 149 KLVKEFGIPDCLLFLRELKRKK---RPWHHVVSSVRAFVRYSCERNLLADCNFSRWDRIL 205

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            +   K    LP   + ++   ++D         +     R+ A+L L    GLR S+ +
Sbjct: 206 CLHRPKNPQ-LPSYYSREEIKKMLD-----AIDRSCPKGKRDYAMLLLAARYGLRASDIV 259

Query: 175 SLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
            +T  N   + + L  +Q K  K    PL   +  AI++Y      D++ +  + L    
Sbjct: 260 GITYANFEWEFNRLSLVQAKTGKPVSFPLSEEIGSAIIDYIKFGRPDID-SPHVFLEHMA 318

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLP---LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             + ++P    R + +      +         H+LRHS A +L  NG     I  ILGH 
Sbjct: 319 PYQRISPQALSRIVSEWMLAARIDISTRKHGPHSLRHSLAINLFENGESPSVISEILGHS 378

Query: 291 RLSTTQIYTNVNSKNGGDWMMEI 313
            L TT  Y  V+ K+     +E+
Sbjct: 379 NLLTTMSYVKVDLKHLRQCALEV 401


>gi|229916806|ref|YP_002885452.1| integrase family protein [Exiguobacterium sp. AT1b]
 gi|229468235|gb|ACQ70007.1| integrase family protein [Exiguobacterium sp. AT1b]
          Length = 287

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 57/292 (19%), Positives = 109/292 (37%), Gaps = 22/292 (7%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
             L +  G S  T+      T +F  F     + + T+   +  +  ++  +I+  R++ 
Sbjct: 14  HYLRMT-GKSDNTVS---QATYKFARFQKLMGQNR-TLDDFK--TRQDVMPYITALRSEG 66

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
               ++   LS ++    +    ++ T +   ++R                   ++D + 
Sbjct: 67  CQPVTINNYLSALRGLYDWAITEQLVTHNPFHHLRVKVTERPPSDVPTPSDLHRVIDAID 126

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVP 201
           +                L L    G+RI+E   LT   I  +   L I   K  K R VP
Sbjct: 127 V----------PLYRTFLTLQLHTGMRINEVRQLTLDAIDLNARLLYIHESKTGKPRKVP 176

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           L       +  Y +     ++      +F   RG  +      R++++    + L  S T
Sbjct: 177 LNDVTHAMMTTYLEEERRCID---SPYVFPSARGDLICKTTINRHLKRAAEDV-LGTSVT 232

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +HTLRH+F +HL   G    ++  +LGH    TT+ Y  V   +  D +  +
Sbjct: 233 SHTLRHAFTSHLYDMGVKETTLSELLGHSEPKTTRRYIRVREDHLRDAVERL 284


>gi|186687205|ref|YP_001870348.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186469508|gb|ACC85307.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
          Length = 309

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 62/300 (20%), Positives = 126/300 (42%), Gaps = 26/300 (8%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            + +  L  L +E G +  ++++Y+  TR+FL FL          + +++++Y ++  + 
Sbjct: 21  AQAEAKLIALWLE-GKASSSIRAYQRYTRRFLDFLD---------KPLKKVTYEDLVEYA 70

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-PRALNEKQA 134
           S        + + +  ++  KS + +  K      +  + ++  +  + +  R L+E   
Sbjct: 71  SSF--GGNAESTKRIYIAAAKSLISFAHKIGYLPFNVGMALKLGELPDVINERYLDEADI 128

Query: 135 LTLVDNVLLHTSH----ETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTL 188
             LV     H +     + ++   RN  I+ LLY  GLR SE   LT  +     D   +
Sbjct: 129 KLLVRAASKHLTDAKTPKRQYTALRNLLIIKLLYQAGLRASEICELTWGDLTPRGDSGQV 188

Query: 189 RIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
            ++  KG K R + + P +   ++E      F  N +    +F   +G  L+       +
Sbjct: 189 YVRKAKGSKNRTILIKPKLWAELIE------FKDNAHSNQAVFPSQKGGHLDRQNLHPIV 242

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           + +    GL    +AH LRH+  +H +  G +   ++  LGH  L+ T  Y      +  
Sbjct: 243 KAIALEAGLSELVSAHWLRHAHGSHAIERGTNPVLVKETLGHANLAITDRYLKARPNDSS 302


>gi|126660765|ref|ZP_01731862.1| phage integrase [Cyanothece sp. CCY0110]
 gi|126617956|gb|EAZ88728.1| phage integrase [Cyanothece sp. CCY0110]
          Length = 362

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 65/350 (18%), Positives = 121/350 (34%), Gaps = 64/350 (18%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           ++   +LL     +++    +   +  T+++Y C  RQF  +        +        +
Sbjct: 9   DLTPTDLLDRFAAFVRLDTADGNAADDTVKTYACTVRQFFGWCNSLRLHPL------DAT 62

Query: 68  YTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK---SN 123
             +I+ +       Q     ++   L+ ++ F     +R +   +  L ++  ++     
Sbjct: 63  RDDIKLYRRWLVEIQDYKCATIALKLTVVRRFYAGAVERGLILANPALGIKPPRENIDPA 122

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
                L E +   L    L     E      R+  ++ ++   G R  E       +I+ 
Sbjct: 123 ERINYLEEAEVTGL----LASLPTENTIGALRDRFLVAVMVLEGCRTVEMHRACIGDIVK 178

Query: 184 DQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLF----RGIRGK 236
                 +R+ GK  + RIVPL P + K + +Y +        L    PLF    +   G 
Sbjct: 179 RGGDIGIRVSGKRSR-RIVPLTPDLAKLLNKYLNARKRSGEALLADTPLFIALDKRTHGG 237

Query: 237 PLNPGVFQRYIRQLRRYLGLP--------------------------------------- 257
            L+    QR I +  R  GL                                        
Sbjct: 238 RLSRRSIQRVIDKYLRASGLKEQPTKAKSKKRASNQSHQPSIREKQSPAQSASSKSHKFQ 297

Query: 258 ---LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
                 +AH+LRH+  T  +  G DLR +Q +LGH    TT +Y +V  +
Sbjct: 298 QPQRQLSAHSLRHTAGTLAIRAGSDLRQVQDLLGHADPRTTALYAHVADR 347


>gi|262202503|ref|YP_003273711.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262202582|ref|YP_003273790.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262085850|gb|ACY21818.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262085929|gb|ACY21897.1| integrase family protein [Gordonia bronchialis DSM 43247]
          Length = 608

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 61/297 (20%), Positives = 118/297 (39%), Gaps = 23/297 (7%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK----RRTQKIGDR 86
           L   T+   E D R+F  +L     +      ++++   E + ++S     R  + +   
Sbjct: 226 LRPNTVTGIEHDLRRFGSWLTDTHPQIANCAELQRVHIEEFKKWLSTTPTPRTGKPLNRV 285

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLVDNVL 142
           S+K +L  +  F   +        + +  +            LPR L++  A  L+    
Sbjct: 286 SIKNALINLHCFFDRITDWDY-PNAPVRPLVFIGDLPIIDKPLPRFLDDGAATKLLRAAR 344

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRI 199
             T       D  +  I+ LL   G+RISE L LT   ++   +   ++   GK    R 
Sbjct: 345 ADT-------DPLSRLIVELLARTGIRISELLGLTTDAVVQIGTAFWLRIPLGKMHNDRY 397

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +PL P +++ + ++ D       +     L    R  P+        + +     G+   
Sbjct: 398 IPLHPQLKELLDDWIDN-HRPTGIRTSRLLVENHR--PITSHRVTAALDRHAEAAGIG-H 453

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            TAH LRH+ AT  ++ G  L +I ++LGH  L+ T +Y  +  +   +    + ++
Sbjct: 454 VTAHQLRHTLATQAINRGMSLDAIAALLGHKTLAMTMVYARIADRTVAEQYFSVTEK 510


>gi|154148966|ref|YP_001406688.1| phage integrase family site specific recombinase [Campylobacter
           hominis ATCC BAA-381]
 gi|153804975|gb|ABS51982.1| site-specific recombinase, phage integrase family [Campylobacter
           hominis ATCC BAA-381]
          Length = 352

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 62/262 (23%), Positives = 117/262 (44%), Gaps = 19/262 (7%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY---LKKRKITTESNI 113
           K  +++I Q+    +   ++   T  + D + K     + +F  +     +    + +  
Sbjct: 88  KYNLKSISQIDEELVSEILA-VITGGLSDATKKNYRVVMINFFGFLDSQNEENGKSHNFG 146

Query: 114 LNMRNL-----KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
           + ++N      +K   LP  L+E +    ++ V      +      RN   + ++   G+
Sbjct: 147 VTLKNWGGISGQKGVKLPEFLSEDELKIFLEAVEKADFGKNT---NRNMLAVKIIIYTGI 203

Query: 169 RISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           R+ EA++L  ++I ++     LRI+GKG+K R+V +   + +  +E   +      LN  
Sbjct: 204 RVGEAINLKFKDISEENGIYILRIRGKGNKYRVVMIKKHLIEKHIEALSINY----LNED 259

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQS 285
             L    +GKPL      R + ++    G+      AH LRH+FAT L     DL  +Q 
Sbjct: 260 GYLLVNAKGKPLTQAYISRIVEKILISAGIRKEKNGAHMLRHTFATMLYKKQKDLVLVQE 319

Query: 286 ILGHFRLSTTQIYTNVNSKNGG 307
            LGH  L T++IYT+ +S+   
Sbjct: 320 ALGHASLDTSRIYTHFDSQKLR 341


>gi|229106681|ref|ZP_04236913.1| Tyrosine recombinase [Bacillus cereus Rock3-28]
 gi|228676734|gb|EEL31348.1| Tyrosine recombinase [Bacillus cereus Rock3-28]
          Length = 358

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 67/330 (20%), Positives = 123/330 (37%), Gaps = 37/330 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEI 71
            + +++  E+    S  TL +Y  D R F  +L           + I    +  L   ++
Sbjct: 27  IEEFVEYKELHD-ASPSTLLNYVYDFRVFFNWLLSEQIIELKPIKDIPFSDLENLKKKDV 85

Query: 72  RAFISKRR-TQKIGDRSLKRSLSGIKSFLKY------------------LKKRKITTESN 112
             F+   +  Q + + S+ R +S +KS  KY                  + K +I  +  
Sbjct: 86  ENFMRFLKLQQSMQNSSVNRKISALKSLFKYLTALSENEDGECYFYRNVMAKIEIHKDKE 145

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-----RNSAILYLLYGCG 167
            LN R  +  + +    ++++ L  V      +  + +         R+ AIL L  G G
Sbjct: 146 TLNARAKRMRSKIFHNDDDQEFLNYVKYEHEKSLTKHQLFYFLRDKDRDVAILSLFLGSG 205

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           +R+SE   L  ++I   +  + +  KG+K   V + P     I +Y ++         +L
Sbjct: 206 IRVSELADLRMEDINLKERLIDVIRKGNKEDSVWITPIALNDIEKYMEIRDNKYAPGKEL 265

Query: 228 P-LFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             +F         PL+    Q  + +  +  G     + H LRH+ A  L     D   +
Sbjct: 266 KNVFLSKYKHTAQPLSVRAIQDIVEKYTKAYG--KRMSPHKLRHTLANKLYMEEKDSLQV 323

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              LGH    T  +YT +      D +  I
Sbjct: 324 MQQLGHTSQDTALLYTQLGETTIKDSLGRI 353


>gi|70607234|ref|YP_256104.1| integrase/recombinase XerD [Sulfolobus acidocaldarius DSM 639]
 gi|68567882|gb|AAY80811.1| integrase/recombinase XerD [Sulfolobus acidocaldarius DSM 639]
          Length = 287

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 62/299 (20%), Positives = 119/299 (39%), Gaps = 52/299 (17%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI-------------- 75
           G S+ T++ Y    + FL F+          +  RQ++ +++ A++              
Sbjct: 26  GASENTIRLYSIAIKDFLDFVK---------KDPRQVTNSDVNAWLLKILKSSTRSKRVR 76

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            +   +++   + K  L+ +  FLK+L K         +     K   +  RAL  ++  
Sbjct: 77  EENEKRRMKLTTAKIYLTAVLRFLKWLGK----DVKPTV----PKARKNEIRALTYEELE 128

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L          +      R++ IL LL   G+R  E LS+  Q+I  ++  + I+   +
Sbjct: 129 KL----------KASAKKLRDAVILNLLIDTGIRAKELLSIKVQDIDLERRRIIIRNTKN 178

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
               +    S   A+L+ Y         +         +   +      R +R+L + +G
Sbjct: 179 GESRIVFFTSHTGALLKKYIQKNKKEPED---------KLINMTYQALYRKLRRLGKKIG 229

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           + L    H LRH+FAT  +  G  L  +Q ILGH  +  TQ+YT++  ++        +
Sbjct: 230 IDLR--PHILRHTFATEAIRKGIPLPVVQKILGHKDIRVTQVYTHLVIEDVEKAYKNTF 286


>gi|312195374|ref|YP_004015435.1| integrase family protein [Frankia sp. EuI1c]
 gi|311226710|gb|ADP79565.1| integrase family protein [Frankia sp. EuI1c]
          Length = 304

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 106/286 (37%), Gaps = 14/286 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L     +W ++L      S  T+QSY      F+ +L     E+   ++   ++   + 
Sbjct: 11  DLTTLLPDWRRHLRAL-NRSPATIQSYLTVGESFVGYLT----EQGMPRSAGAIAREHVE 65

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           A++    ++++   ++ +    ++   ++L +    + +    M         P  +   
Sbjct: 66  AYLVSL-SERVSAATVAKHYRSLQQLFRWLVEDGEISRTPFERMSAPAVPEQ-PVPILGD 123

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
             L      LL       + + R++AI+ L    G+RI E + L+  ++  D     + G
Sbjct: 124 DVLR----KLLDACKGNSFENRRDAAIIRLFLDTGVRIGELVGLSVDDLDFDHDVAHVMG 179

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG + R VP       A+  Y               L+ G +  P+      + + +   
Sbjct: 180 KGRRGRAVPYGNRTADALRRYIRARARHGQAK-SPALWLGKK-GPMTSSGISQMLERRAA 237

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             G+P    AH  RH+FA   L+ G   + +  + G         Y
Sbjct: 238 DAGVPK-LHAHQFRHTFAHAWLAAGHQEQDLMRLAGWRSREMVGRY 282


>gi|253576683|ref|ZP_04854010.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843893|gb|EES71914.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 360

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 70/338 (20%), Positives = 119/338 (35%), Gaps = 47/338 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEI 71
            Q ++     +  LS  TL  Y  D  QF  +L      A  T  ++T+  +  L    I
Sbjct: 23  VQQFIDYKLPD--LSPSTLLEYVRDYEQFFSWLRAEGLTAAQTNAQVTLHDLETLHMESI 80

Query: 72  ---RAFISKRRTQKIGDRSLKRSLSGIKSFLKYL------------KKRKITTESNILNM 116
              R  ++ R        ++ R +S ++S   YL             KR I  +  I  +
Sbjct: 81  VGYRLHLTTRTESTNSKITVSRKMSSLRSLFHYLSQIAEDENFYPLLKRNIMAKVEIKRI 140

Query: 117 RNLK-KSNSLP-RALNEKQALTLV----DNVLLHTSHETKWIDAR------NSAILYLLY 164
              K  +  L  + L E +    +    +      +   + + A       ++ I  L+ 
Sbjct: 141 HKPKDTAAKLKGKILEEDELTEFIAYIAEGYGRDIADNKQALYAYELNKERDACIASLIL 200

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI----RIVPLLPSVRKAILEYYDLCPFD 220
             GLR+SE ++L   ++      + +  KG+        V      R  +  Y  L    
Sbjct: 201 NSGLRVSEVVNLNIDDLDLANKLIYVYRKGNNDESFKTPVYFREQCRDDLAAYLTLRQAR 260

Query: 221 LN-LNIQLPLFRGIRG-----KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                 +  LF  I       K +     Q  I +  +  G P   T H LRHSFAT   
Sbjct: 261 YRTPKREKALFVAIPNGQKEGKRMTKRAIQAMIIKYAKRFGKPY-LTVHKLRHSFATDYY 319

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
               D+   +  LGH    TT++Y ++  K   + +  
Sbjct: 320 LQN-DIYKTKEQLGHASTETTEVYAHLTDKTMSEAIER 356


>gi|65317106|ref|ZP_00390065.1| COG0582: Integrase [Bacillus anthracis str. A2012]
          Length = 272

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 58/276 (21%), Positives = 117/276 (42%), Gaps = 14/276 (5%)

Query: 53  YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
           Y  E   +  +  ++   I+  +  + +       +   +  ++SF KYL   +  + + 
Sbjct: 7   YLNEHHEVNDVEDVATFHIKKLVQHQISLGKKANYINTLIKSLRSFYKYLVVEEYVSVNI 66

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           +  ++ LK+   + +   + +   +++     T     +++ARN  I+ +    G+R+SE
Sbjct: 67  MNKIKLLKEDVEVIKTFTDDEVAKMIEAYDFKT-----YLNARNKVIIAMFVDTGMRMSE 121

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY--YDLCPFDLNLNIQLPLF 230
            ++L    I D   +LRI+GKG K R VP+   ++K ++ Y       F+         F
Sbjct: 122 LINLQSSWIYDT--SLRIKGKGSKWRHVPMSLMLKKYMIRYERIKAKYFEKKALEHDNYF 179

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILG 288
               GKP+     +  ++      G+      + HT+RH      L NG DL S   I G
Sbjct: 180 LSRAGKPICTVQIENIVKIAGLRAGVREDIRCSPHTVRHYAIQSNLRNGLDLYSCSKIAG 239

Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           H  +  T+ Y         + ++E+  +T P +  +
Sbjct: 240 HENIQVTKRYL---QGLEMENILEMAQKTSPLMNLR 272


>gi|298250834|ref|ZP_06974638.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297548838|gb|EFH82705.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 309

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 65/279 (23%), Positives = 118/279 (42%), Gaps = 25/279 (8%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            L+  + ++Y  D + F  +LA          ++  L+   + A+ +    +     +  
Sbjct: 28  QLAPSSRKTYTIDAKHFAHWLAGRD------LSLTSLNRDNLVAYRTHL-AETYAQSTAA 80

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-PRALNEKQALTLVDNVLLHTSHE 148
           R  +  +  L    +R +  ++    +R  K  +   P AL  ++A  L+D         
Sbjct: 81  RMWAVARRLLDEAVQRGLLLKNPAEGVRGFKTGDDESPHALKREEAKALLD-----AIDR 135

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKGDKIRIVPLLPS 205
              +  R++A+L LL   G+R +EA++LT  ++M +Q     +   GKG K  +  L   
Sbjct: 136 RTALGKRDNALLMLLLRTGIRRAEAVALTIGDLMMEQGYHIVIIRHGKGKKRGLAKLPVE 195

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRG------KPLNPGVFQRYIRQLRRYLGLPLS 259
           VR+AI +Y +          + PLF   R       +PL+P    R ++Q  + +G+   
Sbjct: 196 VRQAIDDYLEAVGRACAA-PEAPLFISFRKGDHPQERPLHPNQVGRIVKQRAQVVGIV-- 252

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            + H +R SF T     G DL  +Q    H    TT+ Y
Sbjct: 253 MSPHGMRASFITLAFEGGADLALVQDGARHKDPRTTRRY 291


>gi|327184452|gb|AEA32897.1| putative integrase [Lactobacillus amylovorus GRL 1118]
          Length = 326

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 57/297 (19%), Positives = 115/297 (38%), Gaps = 31/297 (10%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L    Q ++  ++     +  T+++Y    +Q+ ++L            I       +R 
Sbjct: 29  LEDLFQQFIIFIDA----TPNTVRTYRGSLKQWFLYLRQNQ--------IGHPDSETVRQ 76

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEK 132
           +  K +       ++K  +  +K F ++ ++      +    +++   S +  +  L   
Sbjct: 77  YRQKLQNSGKKPTTVKNYIIAVKRFFEWTEEAGFYP-NIAKYIKSGHLSKNFKKDYLTGS 135

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRI 190
           QA  ++D +       +     R+ A+L  +   GLR  E       +I    +   L +
Sbjct: 136 QARQILDKI-----DRSTIKGKRDYAMLVTMLTMGLRTIEVSRADIDDIRTKGNMTVLYV 190

Query: 191 QGKGDKIRIV--PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQ 244
           QGKG + +     +   V  AI +Y  +   +   ++  PLF           +     +
Sbjct: 191 QGKGHEEKDDLIRMPQHVESAIRDYLSVRKAN---DLSKPLFVSTSNHNANGRMTTRSIR 247

Query: 245 RYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           R ++      G      TAH+ RH+ AT  L NG  L+  Q +L H  + TT+IY +
Sbjct: 248 RIVKTAFISAGYDSPRLTAHSTRHTAATLSLLNGATLQQTQELLRHRNIGTTEIYAH 304


>gi|310697970|gb|ADP06874.1| integrase IntI1 [Serratia marcescens]
          Length = 281

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 64/300 (21%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 281


>gi|289650500|ref|ZP_06481843.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. aesculi str. 2250]
          Length = 279

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 56/251 (22%), Positives = 106/251 (42%), Gaps = 23/251 (9%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T ++Y+ D   F  F+        +    RQ++ + + A+ +    + +   +++R L
Sbjct: 40  PRTRRAYQNDLTDFSAFIGL-----ASADDFRQVTRSHVLAWRANLEQRGLAGATIRRKL 94

Query: 93  SGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALTLVDNV---LLHTSHE 148
           + + S   +L +       + +  ++  K  +      NE +   L D+    LL    E
Sbjct: 95  AALASLFDHLLESNAIAGGNPVHGVKRPKIES------NEGKTPALGDHQAKALLEAPDE 148

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSV 206
           +     R+ A+L +L   GLR  EA  L   +I + +    L+I GKG K+R +PL P  
Sbjct: 149 STLKGLRDRAMLAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKGGKVRYLPLHPVA 208

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPL-STT 261
              I  Y +     L  + ++PLF  +RGK     ++       +    +  G+ +    
Sbjct: 209 AGRIHWYLERSGHHLG-DKKVPLFISLRGKSTGASISANGIYTVVEAYTKKAGIEVAGLG 267

Query: 262 AHTLRHSFATH 272
            H LR + AT+
Sbjct: 268 VHGLRATAATN 278


>gi|46562173|ref|YP_009122.1| phage integrase family site specific recombinase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46447710|gb|AAS94376.1| site-specific recombinase, phage integrase family [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311235464|gb|ADP88317.1| integrase family protein [Desulfovibrio vulgaris RCH1]
          Length = 343

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 61/290 (21%), Positives = 108/290 (37%), Gaps = 29/290 (10%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
            ++   R  S  T++ Y      F  F             +  +    I  +++      
Sbjct: 50  AHMVSLRRGSPGTVRVYLPTLLAFFRFAE---------TPVTHIRVWHIEDWLNSLEQAA 100

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALTLVDN 140
               ++   L+ IKSF  YL K  +   +    ++  K  + +   R L  ++   L+++
Sbjct: 101 YKPATIATKLACIKSFFGYLWKCGLLPLNPAAPVKGPKHIEGHHGDRVLLAEEVQELLEH 160

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD---QSTLRIQGKGDKI 197
              H         AR+  +  LL+  G R +EA+SL   ++  D   +    + GKG K 
Sbjct: 161 TRRHAP-------ARDHLMCRLLFAAGARAAEAVSLRWGDLRRDVRGRWYATVMGKGRKT 213

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQ-----LPLFRGIR--GKPLNPGVFQRYIRQL 250
           R + +   +   +L +                  +PLF   R   +P+      R + + 
Sbjct: 214 RHLHIPKDLAADLLVWKGALYSIEPYQPAPGLDAVPLFPNRRVLTQPITVKTAYRIVTRW 273

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                L    + H LRH+FATH    G  L  I+  LGH  + TT  Y +
Sbjct: 274 GEAA-LGRKISPHWLRHTFATHSRLAGATLEQIRVALGHESIQTTIRYEH 322


>gi|126664399|ref|ZP_01735383.1| putative transcriptional regulator, Fis family protein
           [Marinobacter sp. ELB17]
 gi|126667639|ref|ZP_01738608.1| putative transcriptional regulator, Fis family protein
           [Marinobacter sp. ELB17]
 gi|126627908|gb|EAZ98536.1| putative transcriptional regulator, Fis family protein
           [Marinobacter sp. ELB17]
 gi|126630725|gb|EBA01339.1| putative transcriptional regulator, Fis family protein
           [Marinobacter sp. ELB17]
          Length = 301

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 57/278 (20%), Positives = 114/278 (41%), Gaps = 27/278 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G +  T+  Y    R+   F                L+   ++ + +          ++K
Sbjct: 24  GKAATTIDVYSRAVRRVTEFFDRC---------PDTLTLDNLKEYFTAL-VHSHSWSTVK 73

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
              +G++ F K++  +  T     +++    +  +LP  L + +   ++++         
Sbjct: 74  VDRNGLQFFYKHVLNKTWT----WVDIVKPPQKKTLPDILTQAEIERVINHTR------- 122

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRK 208
              + R    + + Y  GLR+ EAL+L   +I   +  + ++ GKG K R+V L    R 
Sbjct: 123 ---ELRYQTFILVAYSMGLRLGEALNLKVGDIDGQRMKVHVRLGKGQKDRVVTLPTITRT 179

Query: 209 AILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           A+  Y+     P  L    + P  R +    ++    Q+  + + +   +    T H+LR
Sbjct: 180 ALRYYWSTHRHPQFLFPRGRTPEERKLAIAVMDRSGLQKSFKAILKSCNIHKDITPHSLR 239

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           H +  HL ++   LR+IQ  +GH    TT IYT +  +
Sbjct: 240 HCYGAHLTASNLHLRAIQFEMGHACPKTTAIYTQLTDE 277


>gi|194466381|ref|ZP_03072368.1| integrase family protein [Lactobacillus reuteri 100-23]
 gi|194453417|gb|EDX42314.1| integrase family protein [Lactobacillus reuteri 100-23]
          Length = 359

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 66/352 (18%), Positives = 138/352 (39%), Gaps = 42/352 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYT 54
           ME +   +++  EL +   +++    +    +  T   Y  + R+F  +L      A  +
Sbjct: 1   MEADKYLKLIQEEL-QNLPDYVNEYYLGTNHAVTTTYQYLTEIRRFFDWLRSSGLVAVNS 59

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRT------QKIGDRSLKRSLSGIKSFLKY------- 101
            + + I T+  L  +++  +I+  +       +     S+ RS++ ++S  K+       
Sbjct: 60  NKDLPIDTLANLRRSDVMLYINYLQHTTNAQGRLNSPTSINRSINALRSLYKFLTVTADN 119

Query: 102 LKKRKITTESNILNMRNLKKSNSL-----------PRALNEKQALTLVDNVLLHTSHETK 150
                    + +L + +L  + +L            R   +   +T ++    +   +  
Sbjct: 120 NNGESYFDRNVMLKIDSLNDTKTLNYRAHTLASHMYRGQMKFDFITFIEKEYPNKCDKRA 179

Query: 151 WIDA-----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
                    R+ AI+ L+ G G+R+SEA ++   ++   QS L +  KG +   VP+ P 
Sbjct: 180 LPSYKVNKERDIAIIALILGTGVRVSEAANVNLGDLNLKQSLLDVTRKGGQRDSVPIAPW 239

Query: 206 VRKAILEYYDLCPFDLN-LNIQLPLFRGIRG---KPLNPGVFQRYIRQLRRYLGLPLSTT 261
               I  Y  +     + L      F  +     + +     ++ +++     G P   T
Sbjct: 240 AITYIQTYQAIRAQRYHALKRDTAFFLTVYHKQTRRMTANAIEKMVKKYSTAFGHP--LT 297

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            H LRH+ A+ +     D   +   LG    S T +YT+V+ K   D + EI
Sbjct: 298 PHKLRHTLASEMYEVTKDQVLVAQQLGQKGTSATDLYTHVDQKQQRDALKEI 349


>gi|323484865|ref|ZP_08090221.1| phage integrase family Integrase/recombinase [Clostridium symbiosum
           WAL-14163]
 gi|323401861|gb|EGA94203.1| phage integrase family Integrase/recombinase [Clostridium symbiosum
           WAL-14163]
          Length = 279

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 56/284 (19%), Positives = 111/284 (39%), Gaps = 40/284 (14%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + ++LE +   S+ T++ Y  D R+F+ F+              +++   +  F      
Sbjct: 13  FCEHLE-QDEKSRHTIEKYRRDLRKFIDFING-----------GEVTKERVINFKEYL-V 59

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP----RALNEKQALT 136
           +     S+   L+ I  F+ +   ++         ++ LKK   +     R L+ ++   
Sbjct: 60  ENYALNSVNSILASINHFMVFAGWQEF-------RVKQLKKQRQVYCPEERELSRQEYFE 112

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+                    I+  +   G+RISE  S+T Q + D    +  +GK   
Sbjct: 113 LIRTAKREGKERIC-------LIIQTIGSTGIRISELPSITVQAVKDGGVQVDCKGKS-- 163

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R V +   +   ++ Y              P+FR  +G P++     + ++++ R  G+
Sbjct: 164 -RQVLMPKKLTMKLMHYIKKEKIR-----SGPVFRTKQGNPIDRSNIWKEMKKICRKAGI 217

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                  H LRH FA        D+  +  +LGH  ++TT+IY 
Sbjct: 218 KEKKVFPHNLRHLFACSFYQMEKDIAKLADLLGHSNINTTRIYI 261


>gi|24375372|ref|NP_719415.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24350199|gb|AAN56859.1|AE015821_4 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 310

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 65/290 (22%), Positives = 123/290 (42%), Gaps = 17/290 (5%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            L+  + +S     R     + +   +++  + +  ++Y +     +    ++   RS+ 
Sbjct: 13  RLAPNSQRSIASQMRSIAQLMDW--PDEVIGKQLSSINYQQAMQIRALLIHEQWSARSIN 70

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPRALNEKQALTLVDNVLLHTS 146
           R+++ IKS +K            + ++ ++   K        L+ +Q   L    L   S
Sbjct: 71  RAMTAIKSIVKVAALMGEADMQQVAHINSIANMKHGAHQGNPLSAEQVTKL----LALLS 126

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS 205
                   R  AI  L  G GLR SE  +LT  +     ST+++  GKG+K RI+ L   
Sbjct: 127 KRQDTYGLRTLAIFALFLGTGLRRSELAALTLADYDSATSTIKVVAGKGNKSRILFLPDW 186

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGI--RGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           V + ++ + ++    L   I      GI    +P++     R ++     +G+ +  + H
Sbjct: 187 VEQHVIAWLNVRKMQLGPLICHCRTTGIIVHYRPVSRDALYRLVKDKLGDIGV-VGASPH 245

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            LR +F T LL    D+ +++ + GH  +STT IY     K G  +M E 
Sbjct: 246 DLRRTFITRLLEQNVDINTVRQMAGHADISTTTIY----DKRGDAFMREA 291


>gi|148544222|ref|YP_001271592.1| site-specific tyrosine recombinase XerS [Lactobacillus reuteri DSM
           20016]
 gi|184153585|ref|YP_001841926.1| site-specific tyrosine recombinase XerS [Lactobacillus reuteri JCM
           1112]
 gi|227364653|ref|ZP_03848711.1| site-specific tyrosine recombinase XerS [Lactobacillus reuteri
           MM2-3]
 gi|325682232|ref|ZP_08161749.1| phage integrase family integrase/recombinase [Lactobacillus reuteri
           MM4-1A]
 gi|148531256|gb|ABQ83255.1| phage integrase family protein [Lactobacillus reuteri DSM 20016]
 gi|183224929|dbj|BAG25446.1| integrase [Lactobacillus reuteri JCM 1112]
 gi|227070324|gb|EEI08689.1| site-specific tyrosine recombinase XerS [Lactobacillus reuteri
           MM2-3]
 gi|324978071|gb|EGC15021.1| phage integrase family integrase/recombinase [Lactobacillus reuteri
           MM4-1A]
          Length = 359

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 65/352 (18%), Positives = 135/352 (38%), Gaps = 42/352 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT------ 54
           ME +   +++  EL +   +++    +    +  T   Y  + R+F  +L          
Sbjct: 1   MEADKYLKLIQEEL-QNLPDYVNEYYLGTNHAVTTTYQYLTEIRRFFDWLRSSGLVSVNS 59

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRT------QKIGDRSLKRSLSGIKSFLKY------- 101
            + + I T+  L  +++  +I   +       +     S+ RS++ ++S  K+       
Sbjct: 60  NKDLPIDTLANLRRSDVMLYIDYLQHTTNAQGRLNSPTSINRSINALRSLYKFLTVTADN 119

Query: 102 LKKRKITTESNILNMRNLKKSNSL-----------PRALNEKQALTLVDNVLLHTSHETK 150
                    + +L + +L  + +L            R   +   +T ++    +   +  
Sbjct: 120 NNGESYFDRNVMLKIDSLNDTKTLNYRAHTLASHMYRGQMKFDFITFIEEEYPNKCDKRA 179

Query: 151 WIDA-----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
                    R+ AI+ L+ G G+R+SEA ++   ++   QS L +  KG +   VP+ P 
Sbjct: 180 LPSYKVNKERDIAIIALILGTGVRVSEAANVNLGDLNLKQSLLDVTRKGGQRDSVPIAPW 239

Query: 206 VRKAILEYYDLCPFDLN-LNIQLPLFRGIRG---KPLNPGVFQRYIRQLRRYLGLPLSTT 261
               I  Y  +     + L      F  +     + +     ++ +++     G P   T
Sbjct: 240 AITYIKAYQAIRAQRYHALKKDTAFFLTVYHKQTRRMTANAIEKMVKKYSTAFGHP--LT 297

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            H LRH+ A+ +     D   +   LG    S T +YT+V+ K   D + EI
Sbjct: 298 PHKLRHTLASEMYEVTKDQVLVAQQLGQKGTSATDLYTHVDQKQQRDALKEI 349


>gi|239917189|ref|YP_002956747.1| site-specific recombinase, integrase family [Micrococcus luteus
           NCTC 2665]
 gi|281414340|ref|ZP_06246082.1| site-specific recombinase, integrase family protein [Micrococcus
           luteus NCTC 2665]
 gi|239838396|gb|ACS30193.1| site-specific recombinase, integrase family [Micrococcus luteus
           NCTC 2665]
          Length = 312

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 56/306 (18%), Positives = 115/306 (37%), Gaps = 66/306 (21%)

Query: 62  TIRQLSYTEIRAFISKRR----------------TQKIGDRSLKRSLSGIKSFLKYLKKR 105
              ++    +  F++  R                     + ++ R LS + +F ++  + 
Sbjct: 9   DWCEVRLENVAEFVAWLRRPPQLRDGTVPILPSVEHHCTESTVNRKLSALSAFYQHAARH 68

Query: 106 KITTES----------------NILNMRNLKKSN-----------SLPRALNEKQALTLV 138
            +                      L+  +  K              LPR L+  +  T++
Sbjct: 69  GVDLGELLRAWQPAGGRGSGWKPFLHHISKGKPQARRAIVLSAQSKLPRVLSAAEVQTIL 128

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG------ 192
           D               R+  +  +L+  G+RI EAL L  ++I   +S + +Q       
Sbjct: 129 DACD----------HLRDRFLFAVLFDTGMRIGEALGLRHEDIAAAESQITVQRRVNDNG 178

Query: 193 ---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIR 248
              K    R VP+   + +   +Y  L   DL+ + + + L+    G PL        ++
Sbjct: 179 ARSKSCAPRTVPVSAELVRLYADYLHLEYDDLDSDYVFVNLWGRPHGHPLTYTAVYDLVK 238

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL-STTQIYTNVNSKNGG 307
           +LRR  G+      H  RH+ AT +L +G  +  +  +LGH  + +TT +Y ++++++  
Sbjct: 239 RLRRRTGIDFD--PHWYRHTAATRMLRDGVPIEVVSKLLGHADITTTTAVYGHLSAEDAR 296

Query: 308 DWMMEI 313
             + E 
Sbjct: 297 KALEEA 302


>gi|293980664|ref|YP_003543422.1| putative integrase/recombinase [Sphingobium japonicum UT26S]
 gi|292677681|dbj|BAI99196.1| putative integrase/recombinase [Sphingobium japonicum UT26S]
          Length = 320

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 62/306 (20%), Positives = 121/306 (39%), Gaps = 27/306 (8%)

Query: 5   NLPEIVSFELLKERQNWLQNLEI-ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
            LP +++    + R  +L+   +  R     T ++Y      FL ++A        + ++
Sbjct: 13  ALPALIASADDRARLRFLEFFAVTIRN--AHTRRAYARAAGDFLTWVAAR-----GVTSL 65

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
             +    + A+I     + +   S+K+ L+G++    +L   ++   +   ++R    S 
Sbjct: 66  GAVQPLHVGAWIEALGGE-MSAPSVKQQLAGVRRLFDWLVIGQVMPVNPAASVRGPAHSQ 124

Query: 124 SLPR--ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              +   L   +A  L+D     T         R+ A++ L+     RI  ALS+  +++
Sbjct: 125 RRGKTPVLAPDEARRLLD-----TIDVGGPAGLRDRALIGLMVYSFARIGAALSMRVEDV 179

Query: 182 MDDQSTLRIQ--GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI------ 233
                 L ++   KG K   +P   ++   +  Y D C  +L    + PLFR I      
Sbjct: 180 FMQNRRLWVRLHEKGGKQHEMPCHHNLEDYLTAYIDGC--ELRAQAKGPLFRTIARGTKR 237

Query: 234 -RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
               PL        +R+      +  +   H+ R +  T  L NGG L +  ++  H   
Sbjct: 238 LSDTPLPQANAFAMVRRRAVAAEIGTAIGNHSFRATGITTYLKNGGTLETAATMANHSST 297

Query: 293 STTQIY 298
            TTQ+Y
Sbjct: 298 RTTQLY 303


>gi|332088977|gb|EGI94089.1| integrase [Shigella boydii 5216-82]
          Length = 337

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 81/315 (25%), Positives = 128/315 (40%), Gaps = 44/315 (13%)

Query: 8   EIVSFE----LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT- 62
           E V+FE         + WL     +R LS+LT   +  D +            KI I T 
Sbjct: 34  EAVAFEKYTLYNHHNKEWLSKPTDKRRLSELTQIWW--DLKGKHEEHGKSNLGKIEIFTK 91

Query: 63  ------IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILN 115
                   Q++ + I  + + RR+Q I   S+ R L+ I   F   ++      E  I  
Sbjct: 92  ITNDPCAFQITKSLISQYCATRRSQGIKPSSINRDLTCISGMFTALIEAELYFGEHPIRG 151

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
            + LK+       L +++   L+             +D  N  I  L    G R  EA  
Sbjct: 152 TKRLKEEKPNTGYLTQEEIALLL-----------AALDGDNKKIAILCLSTGARWGEAAR 200

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           L  +NI+ ++ T  ++ K +K R VP+  +V K I +           N +  LF     
Sbjct: 201 LKAENIIHNRVTF-VKTKTNKPRTVPISEAVAKMIAD-----------NKRGFLFPDADY 248

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  F+R ++       LP+    H LRHSFATH + NGG + ++Q ILGH R+  T
Sbjct: 249 PR-----FRRTMK--AIKPDLPMGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQT 301

Query: 296 QIYTNVNSKNGGDWM 310
            +Y +   +   D +
Sbjct: 302 MVYAHFAPEYLQDAI 316


>gi|296392530|ref|YP_003657414.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296179677|gb|ADG96583.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 349

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 67/300 (22%), Positives = 132/300 (44%), Gaps = 35/300 (11%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L++E + ++    + R LS+ T+       + F           I I+   Q S  ++  
Sbjct: 69  LVQEWELFM----LARRLSQRTITERIRVIKSFAS--------SIGIEP-SQASALDVAR 115

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++++ +  +G  SL      +K++ K+L+  +  T+  ++ +  ++  +  PR ++++ 
Sbjct: 116 WLAQQSS--LGQSSLATYSQYLKAWFKWLQVHEHRTDDPMVKVGTVRYPDRAPRPVSDRD 173

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++ V    +            ++ L    GLR  E   L  ++I+ D   +R+ GK
Sbjct: 174 LARLLETVNRKRT----------RLMVLLYCLAGLRAFEIAKLRGEDIV-DGVFVRVLGK 222

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K R+VPL P + +AI        +    + + P      G  ++     + I    R 
Sbjct: 223 GNKERLVPLHP-ILQAIAPTMPERGWWFPRDSRWP------GMHISGKSVSQTISLTMRR 275

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    T H LRH   T LL  G D+R +Q I+ H  +STT  YT V +    + +  +
Sbjct: 276 AGV--RATPHQLRHWQGTTLLDEGVDIRVVQEIMRHASISTTAQYTQVPTHKTSEAVSRL 333


>gi|120435584|ref|YP_861270.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|120435708|ref|YP_861394.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|117577734|emb|CAL66203.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|117577858|emb|CAL66327.1| phage integrase family protein [Gramella forsetii KT0803]
          Length = 425

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 60/313 (19%), Positives = 127/313 (40%), Gaps = 18/313 (5%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P +    + +    +L++  ++  L+  TL  Y  +   FL +       K +I ++  +
Sbjct: 108 PIVFGGAIGRAITGFLEHKRLKERLTVSTLYGYRKNLFPFLQYC-----NKNSIGSMGDI 162

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNS 124
               I  ++++   +K     ++ ++  ++SF+KY  ++K+        +   +      
Sbjct: 163 DQAFILGYLNQLDCRKKTV--VQVTILALRSFMKYAYQQKLLAIDYSSKIPRYRAVDQPK 220

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP   ++++   L+ +V       +     RN AI+      GLR S+   L    +  D
Sbjct: 221 LPSTYSKEEIEKLIVSV-----DRSNPQGKRNYAIILFAARLGLRASDISRLKFTELHWD 275

Query: 185 QSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
            ST+ I Q K  K  ++P+LP V  A+++Y               + +    +     V 
Sbjct: 276 TSTIEIKQVKTGKELVLPILPDVGNALIDYLKYGRPKSESPFVFLIAKAPYAQFHTSQVV 335

Query: 244 QRYIRQLRRYLGLP---LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              +++  R  G+         H+LRHS    +L     L  I  + GH    +T+ Y  
Sbjct: 336 THVVQRAYRKAGIDIKGRKFGPHSLRHSLGFRMLEESTALPIISEVFGHKSTESTRYYLR 395

Query: 301 VNSKNGGDWMMEI 313
           ++ K+    M+++
Sbjct: 396 IDLKSMRQCMLDV 408


>gi|298250459|ref|ZP_06974263.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297548463|gb|EFH82330.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 382

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 64/354 (18%), Positives = 125/354 (35%), Gaps = 79/354 (22%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ++    ++++L   RG S  T  +Y  D   F+ FL    ++++T      +   ++ A+
Sbjct: 26  IEAVSGFMRHLHA-RGFSPNTQAAYAYDLLHFMSFLE---QQQLTYLDFTPIHALDLLAY 81

Query: 75  I--------------------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT----- 109
           +                    + +    +   S+ R L+ + SF +YL      +     
Sbjct: 82  LRAVPNRKQVQRLGLVLCTTEASQPATHLSASSINRILAAVSSFYEYLILSGRLSGRENP 141

Query: 110 -------------------------ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
                                    +  I  +  +K  + +PR ++E+Q   L+      
Sbjct: 142 IQKTDDPVTARVPTRHQPFMGHASQQRPIRRVVRVKTISRVPRPMSEEQITALL------ 195

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR----------IQGKG 194
                   + R+ A++ L+   GLR  E L+L  ++I   +  +           ++ K 
Sbjct: 196 ----GSLRNCRDKAMILLMLQGGLRPGEILNLHLEDIQYGKRRVIVRYRDDHPKGVRTKS 251

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG----IRGKPLNPGVFQRYIRQL 250
            + R+V L        L  Y +          L    G     R +PL      +   + 
Sbjct: 252 RRERVVDLYEPETLLTLSTYVMQERPQEGESSLVFLVGGQGKRRLEPLGYHALVKLFERH 311

Query: 251 RRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              L +     T H LRH+ AT +   G    ++Q  LGH    +T++YT V+ 
Sbjct: 312 CERLSIREPWVTPHALRHTHATRMWEGGMRELALQKRLGHASPESTRMYTQVSD 365


>gi|227544527|ref|ZP_03974576.1| site-specific tyrosine recombinase XerS [Lactobacillus reuteri
           CF48-3A]
 gi|300908115|ref|ZP_07125584.1| site-specific tyrosine recombinase XerS [Lactobacillus reuteri
           SD2112]
 gi|227185505|gb|EEI65576.1| site-specific tyrosine recombinase XerS [Lactobacillus reuteri
           CF48-3A]
 gi|300894731|gb|EFK88084.1| site-specific tyrosine recombinase XerS [Lactobacillus reuteri
           SD2112]
          Length = 376

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 65/352 (18%), Positives = 135/352 (38%), Gaps = 42/352 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT------ 54
           ME +   +++  EL +   +++    +    +  T   Y  + R+F  +L          
Sbjct: 18  MEADKYLKLIQEEL-QNLPDYVNEYYLGTNHAVTTTYQYLTEIRRFFDWLRSSGLVSVNS 76

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRT------QKIGDRSLKRSLSGIKSFLKY------- 101
            + + I T+  L  +++  +I   +       +     S+ RS++ ++S  K+       
Sbjct: 77  NKDLPIDTLANLRRSDVMLYIDYLQHTTNAQGRLNSPTSINRSINALRSLYKFLTVTADN 136

Query: 102 LKKRKITTESNILNMRNLKKSNSL-----------PRALNEKQALTLVDNVLLHTSHETK 150
                    + +L + +L  + +L            R   +   +T ++    +   +  
Sbjct: 137 NNGESYFDRNVMLKIDSLNDTKTLNYRAHTLASHMYRGQMKFDFITFIEKEYPNKCDKRA 196

Query: 151 WIDA-----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
                    R+ AI+ L+ G G+R+SEA ++   ++   QS L +  KG +   VP+ P 
Sbjct: 197 LPSYKVNKERDIAIIALILGTGVRVSEAANVNLGDLNLKQSLLDVTRKGGQRDSVPIAPW 256

Query: 206 VRKAILEYYDLCPFDLN-LNIQLPLFRGIRG---KPLNPGVFQRYIRQLRRYLGLPLSTT 261
               I  Y  +     + L      F  +     + +     ++ +++     G P   T
Sbjct: 257 AITYIKAYQAIRAQRYHALKKDTAFFLTVYHKQTRRMTANAIEKMVKKYSTAFGHP--LT 314

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            H LRH+ A+ +     D   +   LG    S T +YT+V+ K   D + EI
Sbjct: 315 PHKLRHTLASEMYEVTKDQVLVAQQLGQKGTSATDLYTHVDQKQQRDALKEI 366


>gi|198282466|ref|YP_002218787.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198282807|ref|YP_002219128.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218665405|ref|YP_002425001.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218666076|ref|YP_002426784.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218666400|ref|YP_002425323.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198246987|gb|ACH82580.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198247328|gb|ACH82921.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218517618|gb|ACK78204.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218518289|gb|ACK78875.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218518613|gb|ACK79199.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 414

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 72/286 (25%), Positives = 122/286 (42%), Gaps = 16/286 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + +++  ERGLS +T+ +      +   F A     +    T+  ++  ++ AF+  +  
Sbjct: 125 FARHMREERGLSPVTIAT---RCERLGWFFAGLNPPR---GTLDAITICDLDAFVELKGQ 178

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALTLV 138
           Q     SL    S ++SF  + + R    +     + + +      +P     +    L+
Sbjct: 179 QGWTRASLGSLASSLRSFFAFAEARGWCAKGLTATIESPRLYTREGIPEGPGWEDVQRLL 238

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKI 197
                 ++     +D R+ AIL LL   GLR  E  +L  +++  D   +  ++ K    
Sbjct: 239 -----VSTAGDHPVDIRDRAILMLLALYGLRRGEVAALQLEHLDWDGDKICVVRPKQRIA 293

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +  PLLPSV +AI+ Y             L L  G   +PL+        R     LGL 
Sbjct: 294 QRYPLLPSVGEAIVRYLRDVRPQCEHRA-LFLTIGAPMRPLSAESISHVARARLNQLGLT 352

Query: 258 L-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           L    AH LRH+ A+HLLS+G  L+ I   LGH   ++   YT V+
Sbjct: 353 LSPRGAHCLRHACASHLLSSGFSLKQIGDHLGHRNANSALSYTKVD 398


>gi|323530187|ref|YP_004232339.1| hypothetical protein BC1001_5915 [Burkholderia sp. CCGE1001]
 gi|323387189|gb|ADX59279.1| Protein of unknown function DUF3701 [Burkholderia sp. CCGE1001]
          Length = 570

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 72/346 (20%), Positives = 138/346 (39%), Gaps = 42/346 (12%)

Query: 5   NLPEIVSFE--LLKERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           +L E V+ +    KE +  +    +ERG  LS LT      D   +  FL   T  +  +
Sbjct: 232 SLHESVATQRTYRKEAERLILWAIVERGRALSSLT----TDDAIVYRAFLRRPTPRERWV 287

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             +R  S  + R F +      +   S+  +LS + +  ++L +++    +    ++ +K
Sbjct: 288 GPLRPRSSPDWRPFAA-----NLAASSVAHALSILNALFRWLIEQRYVLANPFSGVK-VK 341

Query: 121 KSNSLP-----RALNEKQ--ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
                      RA +E +   +  +   L  +   +K    R   IL   +  GLR SE 
Sbjct: 342 GGKKTSDFDSSRAFSEWEWNLVRTIAQRLEWSHGWSKPSAERLRFILDFGFATGLRASEL 401

Query: 174 LSLTPQNIMDD---QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-- 228
           +  +  ++  D   +  L++ GKG K   V L P    A+  Y  L    +     +P  
Sbjct: 402 VGASLGHVTTDSHGEHWLKVTGKGHKTGRVALPPLAWDALTRYLTLRELPVTPARWVPET 461

Query: 229 -LFRGIRGKPLNP-------GVFQRYIRQLRRY--------LGLPLSTTAHTLRHSFATH 272
            L   + G+ ++         + +R+ R              G     + H +RH+ ATH
Sbjct: 462 SLVGNLAGESMSAITGVRLWAILKRFFRLAADQIAVDHPPLAGKLRRASPHWMRHTHATH 521

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
            L +G +L +++  L H  +STT +Y + +       +  I+ + +
Sbjct: 522 ALEHGAELTTVRDNLRHASISTTSLYLHADDAKRAKQLGSIFARAN 567


>gi|260892325|ref|YP_003238422.1| integrase family protein [Ammonifex degensii KC4]
 gi|260864466|gb|ACX51572.1| integrase family protein [Ammonifex degensii KC4]
          Length = 414

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 65/328 (19%), Positives = 122/328 (37%), Gaps = 47/328 (14%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +    WL+  +  + L   TL +YE   R +++         +    +R ++   ++A
Sbjct: 100 LGEWLATWLETYKKGK-LRPTTLANYETVIRAYIL-------PSLGSVPLRSVTPASLQA 151

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEK 132
             +    + +  R+++     + + LK   K  +   +        K    +P R L  +
Sbjct: 152 LYNSLSARGLSARTVRLVHVVLNACLKQAVKNGLLVRNPAEATEPPKLKRRVPVRPLARE 211

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +    +        +              L    GLR  E L L  +++  ++  LR++ 
Sbjct: 212 EVEAFLKAARGERLYPA----------FALALKTGLRRGEVLGLKWEDVDLERGVLRVRR 261

Query: 193 --------------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---- 228
                               K +K R    L     A+L+ +     +  L         
Sbjct: 262 SLVEAKDPETGKVRLVFQEPKTEKSRRTVPLTRDVVALLKSHKARQNEEKLYFGEAYEDN 321

Query: 229 --LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
             +F    GKP+ P  F R    + +  GL      H LRH+FAT LL++G +L+++Q +
Sbjct: 322 GLVFCTELGKPIWPRNFLRAFHSVLKKAGLERH-RFHALRHTFATLLLASGEELKNVQEL 380

Query: 287 LGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           LGH R+STT  +Y  V        +  +
Sbjct: 381 LGHERISTTADVYAEVLEDAKKKAVTRL 408


>gi|163785285|ref|ZP_02179942.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879446|gb|EDP73293.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 324

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 52/307 (16%), Positives = 113/307 (36%), Gaps = 35/307 (11%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           L E    +L +  + +L+     R  S  T +      ++         ++      I+ 
Sbjct: 50  LSEGKKIKLSEFIEEYLEWCRENR--SDETFKKARYVLQKL--------KDHTGDIYIKA 99

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           L+   +  ++S    Q I   ++   +  IKS L    + +      +   + LK   + 
Sbjct: 100 LTKKHLDEYVSTLLAQGISRTTINIHIRTIKSALTKAVEWEYVQNHPLEGYKQLKVHQTP 159

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           PR L  +    +          E    D     +  L    G+R+ E   L  ++I  ++
Sbjct: 160 PRFLLPEDIAKV----------EKVIDDEFWLFVFRLFVYTGMRLGEIHKLRWKHIDLNR 209

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
           + ++++        V  +    +A LE                     +  P      + 
Sbjct: 210 NVIKVEKTKTFQSRVIPIHPKLRAELEARTPAMG--------------KVVPYAKPTIEH 255

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            ++   +  G       H LRH+FA+ ++  G DL+++Q +LGH    TT+IY +++ ++
Sbjct: 256 KLKNCFKKAGF-KDLRIHDLRHTFASLMVMAGVDLKTVQELLGHQSYRTTEIYAHLSPQH 314

Query: 306 GGDWMME 312
             + + +
Sbjct: 315 LHEAIKK 321


>gi|310825725|ref|YP_003958082.1| phage integrase family site specific recombinase [Eubacterium
           limosum KIST612]
 gi|308737459|gb|ADO35119.1| phage integrase family site specific recombinase [Eubacterium
           limosum KIST612]
          Length = 412

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 67/355 (18%), Positives = 128/355 (36%), Gaps = 57/355 (16%)

Query: 2   EGNNLPEIVSFELLKERQNW--------------LQNLEIERGLSKLTLQSYECDTRQFL 47
           + NNLP + S E + E  ++              +Q LE  +  S     SY      + 
Sbjct: 69  KRNNLP-VTSLEHMAENYSFRNSVQGGTTLRQCLVQWLEEHKKFSVK-ASSYTR----YC 122

Query: 48  IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-----QKIGDRSLKRSLSGIKSFLKYL 102
             +  +   ++    +  ++   ++ +I   RT     + +   ++K  L  + SF + +
Sbjct: 123 SIVYKHIVPQLGDFPVADVTAAVVQDYIHYLRTDANKHKGLAPSTIKIHLVLLSSFFEKM 182

Query: 103 KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
            + ++   +    +R        P  L + +   L          E K  D R  AIL L
Sbjct: 183 IELEMVQNNPCEAVRIPPSQKKKPNYLKQNEYQKL------EKVLEDKICDKRARAIL-L 235

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK-----------------------IRI 199
               G+R+ E  +L   +I     T+ ++    +                        R 
Sbjct: 236 ALKTGIRLGELAALRWTDIDLQSKTIHVRHSIQRVKAKSPGKNKTEIVFGQTKSVCSQRD 295

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +P+   +   +  Y  +         +  +F   +G  L+P  +Q Y  +L +  G+   
Sbjct: 296 IPMNDGIYTLLYSYQKVLKKSGIFTEESFVFSNRQGSYLDPRAYQNYFSKLLKKAGI-RC 354

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
              H LRH+FAT   S    + ++  ILGH   + T QIY +   +     M +I
Sbjct: 355 VNFHALRHTFATIAASKNMQISTLSRILGHSTPTITLQIYVHAVDEQDRIEMAKI 409


>gi|120586881|ref|YP_961226.1| phage integrase family protein [Desulfovibrio vulgaris subsp.
           vulgaris DP4]
 gi|120564295|gb|ABM30038.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
          Length = 343

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 61/290 (21%), Positives = 108/290 (37%), Gaps = 29/290 (10%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
            ++   R  S  T++ Y      F  F             +  +    I  +++      
Sbjct: 50  AHMVSLRRGSPGTVRVYLPTLLAFFRFAE---------TPVTHIRVWHIEDWLNSLEQAA 100

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALTLVDN 140
               ++   L+ IKSF  YL K  +   +    ++  K  + +   R L  ++   L+++
Sbjct: 101 YKPATIATKLACIKSFFGYLWKCGLLPLNPAAPVKGPKHIEGHHGDRVLLAEEVQELLEH 160

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD---QSTLRIQGKGDKI 197
              H         AR+  +  LL+  G R +EA+SL   ++  D   +    + GKG K 
Sbjct: 161 TRRHAP-------ARDHLMCRLLFAAGARAAEAVSLRWGDLRRDVRGRWYATVMGKGRKT 213

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQ-----LPLFRGIR--GKPLNPGVFQRYIRQL 250
           R + +   +   +L +                  +PLF   R   +P+      R + + 
Sbjct: 214 RHLHIPKDLAADLLVWKGALYSIEPYQPAPGLDAVPLFPNRRVLTRPITVKTAYRIVTRW 273

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                L    + H LRH+FATH    G  L  I+  LGH  + TT  Y +
Sbjct: 274 GEAA-LGRKISPHWLRHTFATHSRLAGATLEQIRVALGHESIQTTIRYEH 322


>gi|295704637|ref|YP_003597712.1| phage integrase family protein [Bacillus megaterium DSM 319]
 gi|294802296|gb|ADF39362.1| phage integrase family protein [Bacillus megaterium DSM 319]
          Length = 360

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 73/325 (22%), Positives = 136/325 (41%), Gaps = 38/325 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q +     I++ LS  T++SY  D +  L F   + E +IT+++I    + E++ F  +
Sbjct: 43  IQLFFSMRIIKKSLSPHTIRSYNQDMKTILSF---FYEREITLKSI---GFMEVKLFNEE 96

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-----------KKSNSLP 126
              Q   +R+  R L   +  L++              +              K++ +  
Sbjct: 97  MMNQ-YANRTAARKLEFFRRMLEFGHATHFYPSLYTTWIEKPSIAKGHYSDKEKQNRTEY 155

Query: 127 RALNEKQALTLVD--NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           R L +++A  +V+    ++      K   ARN  +  LLY  G+R SE LSL   +  +D
Sbjct: 156 RELTDREAQVIVNALESVVRIRQHEKEFKARNRLMGMLLYMSGMRSSELLSLNWGSFRED 215

Query: 185 QS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF--DLNLNIQLPLFRGIRGK--- 236
           +     + + GKG K R +P+   V++ +  Y        +L+     PLF  I+     
Sbjct: 216 RRGNLVVDVIGKGKKERTIPVFDDVKETLFTYRQALNESTELSPFDTDPLFYSIKEYYRT 275

Query: 237 ----PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                L+     R I+     +    S + H  RH+F T+ L+N   L  ++ ++GH  +
Sbjct: 276 GAKKRLSYTTLYRTIKSAVYKVKGNASISPHWFRHTFITNSLANDVPLAVVKQVVGHSSI 335

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQT 317
           +TT +Y     ++       +YD  
Sbjct: 336 ATTNVYLEKLQEDT------VYDAF 354


>gi|254491767|ref|ZP_05104946.1| site-specific recombinase, phage integrase family protein
           [Methylophaga thiooxidans DMS010]
 gi|224463245|gb|EEF79515.1| site-specific recombinase, phage integrase family protein
           [Methylophaga thiooxydans DMS010]
          Length = 409

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 53/273 (19%), Positives = 106/273 (38%), Gaps = 30/273 (10%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           + + +++  +I ++ SKR    +   +  R +  +K+      + ++  ++ I  ++  K
Sbjct: 140 KRLDKVTAWDIESWRSKRHKDGLSASTSNRYIGTLKAMFNRAVEWEVIEQNPITKVKKQK 199

Query: 121 KSNS-LPRALNEKQALTLV------DNVLLHTSH----------ETKWIDARNSA--ILY 161
             N  + R L+  +   L       D  L  ++           ET     ++    ++ 
Sbjct: 200 SDNRAIIRYLSPDEEERLRASLRSRDRRLTQSNPFYADGRFTRLETILGGFQDHVHPMVL 259

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCP 218
           LL   G+R  E  +L  Q++  +   + I G   K  + R +PL       +  +     
Sbjct: 260 LLMNTGMRRGEMFNLRWQDVDLNNKRITIVGNTSKTGQTRYIPLNVEAFNVLQMW----- 314

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
                     +F G  GK        +  + L R   +      H LRH FA+ L+S G 
Sbjct: 315 SKQTKRNAGHVFVGKNGKRFT--NIDKAWKVLLRDAKIH-DFRLHDLRHHFASRLVSAGI 371

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           DL S++ +LGH  +  T  Y ++   +  D + 
Sbjct: 372 DLNSVRELLGHSDIKMTLRYAHLAPAHLSDAVA 404


>gi|148243781|ref|YP_001220021.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|325113222|ref|YP_004277168.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|325113260|ref|YP_004277206.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|326402545|ref|YP_004282626.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|146400344|gb|ABQ28879.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|325049406|dbj|BAJ79744.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|325052689|dbj|BAJ83026.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|325052727|dbj|BAJ83064.1| phage integrase family protein [Acidiphilium multivorum AIU301]
          Length = 403

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 62/289 (21%), Positives = 115/289 (39%), Gaps = 20/289 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N+   L   RGLS  T+  Y    R    FL     +   I    +L   ++ +FI    
Sbjct: 111 NFETYLVKHRGLSPRTI--Y-HTLRFANRFLDHRFGD--AIVDPGRLRPADVISFIEHVL 165

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--NLKKSNSLPRALNEKQALTL 137
                D+++    + ++ FL+YL     T  +  L++     +    LPR L+ +    +
Sbjct: 166 AGARRDKTVA---THVRIFLQYLFGSGATATNLALSVPRAAKRWGARLPRHLSPEGVEAV 222

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +         ++    AR+ A+L ++   GLR +E +++   +I      L ++GKG   
Sbjct: 223 L-----ACVRDSPRHGARDYAMLLIMARLGLRAAEVIAIQLDDIDWRAGELLVRGKGKLH 277

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
             VP+   V +A+  Y        +        R       +  +    ++   +  G  
Sbjct: 278 DRVPISAEVGEALCRYLREERGPASCRTMFVTHRAPYRPFKDSQIVNAVLKDALKATG-Q 336

Query: 258 LSTTA----HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              T     H LRHS AT L+++G  L  +  +L H   ++T IY  ++
Sbjct: 337 KPVTPYVGSHLLRHSLATQLVNSGASLDEVGDVLRHRSRTSTMIYARLD 385


>gi|325525691|gb|EGD03450.1| site-specific tyrosine recombinase XerC [Burkholderia sp. TJI49]
          Length = 138

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 46/143 (32%), Positives = 83/143 (58%), Gaps = 5/143 (3%)

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
             ++ + ++GKG+K R VP+     +A+  +  +    +  +   PLF  +RG  + PGV
Sbjct: 1   LAEAEVTVRGKGNKERKVPVGRKAIEALNAWLAVRGEFVKHDPH-PLFLSVRGNRMAPGV 59

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +  +++     G+P     H LRHSFATH+L + GDLR++Q +LGH  ++ TQ+YT+++
Sbjct: 60  VRERVKRAALAAGIPAHVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYTSLD 119

Query: 303 SKNGGDWMMEIYDQTHPSITQKD 325
            ++    + +IYD  HP   ++D
Sbjct: 120 FQH----LAKIYDSAHPRAKKRD 138


>gi|237752297|ref|ZP_04582777.1| integrase/recombinase XerD [Helicobacter winghamensis ATCC BAA-430]
 gi|229375786|gb|EEO25877.1| integrase/recombinase XerD [Helicobacter winghamensis ATCC BAA-430]
          Length = 355

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 69/285 (24%), Positives = 122/285 (42%), Gaps = 20/285 (7%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y     +   +L      +I +++++ +    ++ F++   T  + D + K     +
Sbjct: 73  INTYILPLSKLHEYLT-----QIDLESLKNVDEELLKEFLT-IHTSSLSDATKKNYRMAL 126

Query: 96  KSFLKYLKKRKITTESNILNMR---------NLKKSNSLPRALNEKQALTLVDNVLLHTS 146
            +F  ++ K+    +    N R           K    LP  +NE +    +D +   T 
Sbjct: 127 LNFFSFIDKQNEDEQGTSYNFRIELKNWGGLRGKSGQKLPSFMNENEVHRFIDGINNFTF 186

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLP 204
                + ARN  IL ++   G+R+ EAL L  ++IM D     ++++GKG+K R+V L  
Sbjct: 187 KHQD-LGARNRLILKIIIYTGIRVGEALGLKLKDIMQDGEFYLIQVRGKGNKPRVVMLKS 245

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AH 263
                 L+       D     +  LF   +GK L      R + Q+    G+      AH
Sbjct: 246 KNIHTDLQ-LWKSTRDTMQAEEDLLFCNHKGKKLTQAYISRIVEQVLVANGIRKEKNGAH 304

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            LRHSFAT L     DL  +Q  LGH  L T++IY + + +   +
Sbjct: 305 MLRHSFATLLYQKSQDLVLVQEALGHASLDTSRIYMHFDKQKLKN 349


>gi|281178375|dbj|BAI54705.1| phage integrase [Escherichia coli SE15]
          Length = 314

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 57/267 (21%), Positives = 106/267 (39%), Gaps = 13/267 (4%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQT--IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97
                  L   A   +           QL+Y  +    +          S+  +LS ++ 
Sbjct: 35  RRGITSLLNRSASILKHGADAADYPWEQLNYAAVAKVRAALLDDGYAVSSVNMALSALRG 94

Query: 98  FLKYLKKRKITTESNILNMRNLKKS----NSLPRALNEKQALTLVDNVLLHTSHETKWID 153
             +            +  +R++K+         RAL  ++   L+        H      
Sbjct: 95  VAQTAFNLNYMDAETLARIRSVKRVSGDVQRKGRALGRQEIRVLIQ---AAKQHPQSVRR 151

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            R+ AI+ +L G GLR  E + L  ++  +   T+R QGKG K R + +  +V KAI  +
Sbjct: 152 CRDVAIVLMLCGTGLRAGELVKLERRDYDNGILTVR-QGKGRKYREIHVADAVDKAIRAW 210

Query: 214 YDLCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
             +   + +  +   + R  +   +PL        + +L++  G+    T H +R +F T
Sbjct: 211 LKVGADEADSALFRRIQRSGKVASQPLTTTGLTGILAELQQTAGIAR-FTPHDMRRTFIT 269

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIY 298
            LL  G D+ +++ + GH  +STT  Y
Sbjct: 270 RLLEQGVDINTVRQLAGHSDISTTTRY 296


>gi|298244848|ref|ZP_06968654.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297552329|gb|EFH86194.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 970

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 56/297 (18%), Positives = 114/297 (38%), Gaps = 20/297 (6%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P   S  + +  Q +L+     +     TL+ ++     F  +L    +  +    I Q+
Sbjct: 619 PRGASLSIEQAIQAYLEAQRRGKRR-PKTLEWHQTALHLFQQYLLTECQCDL----IHQI 673

Query: 67  SYTEIRAFISKRRTQK------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           +   ++ + +  R +           ++       ++F ++L +++    +  +++    
Sbjct: 674 TEAAVQGWFTFLRERPTARGMFRAAGTIASYARSARAFCQWLVRQRYLMRTPFVHLHVPH 733

Query: 121 KSNSLPRALNEKQALTLVDNVLL--HTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           +       +  ++   L+         +       ARN A+L++L   G+R +E   +  
Sbjct: 734 EEPGFLHLVEPEEWERLLLACQPGGEKATGEDQAAARNQAVLWILAETGMRTAEVCGMRL 793

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI------QLPLFRG 232
            ++  +Q  LR+QGKG   R VPL       +  Y D        ++      + PLF  
Sbjct: 794 SDVDREQGRLRVQGKGSTQRWVPLGYEGFHYLCLYLDHHRLKAGQDVKRRRVGEEPLFLS 853

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
             G PL          +LR+  G+         LR +FA   L  GGDL +++  LG
Sbjct: 854 KTGHPLTSNGIALLFGRLRKQAGITRKEVGPVLLRDTFAVRYLQEGGDLLTLRQQLG 910


>gi|282892190|ref|ZP_06300661.1| hypothetical protein pah_c212o013 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497924|gb|EFB40272.1| hypothetical protein pah_c212o013 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 313

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 59/299 (19%), Positives = 125/299 (41%), Gaps = 27/299 (9%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           F+     + ++ +++ +      +  +Y+   + F  +++    E+ +  ++ +++  +I
Sbjct: 17  FDFEDLIERFISSIDAK----ANSKDTYKRQIKPFFEWVS----ERYSFNSLHKMTQQDI 68

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LN 130
            A+            ++   L+ ++ F ++L+  KI   +   +++ LKK     +  L 
Sbjct: 69  FAYKEFLVRDGKSAYTISGYLTAVRKFFEWLESNKIFP-NIAKSVKGLKKPKGFRKDCLT 127

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TL 188
            +Q  T + +  + TS        R+ A+  LL   GLR  E    T  ++  +     L
Sbjct: 128 VEQIRTALSSFDVETSD-----GLRDYALFNLLVRTGLRTVEISRATVGDLRQESGEAIL 182

Query: 189 RIQGKGDKIRIVP--LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGV 242
           +IQGKG   +     L+    + + +Y         L+ + PLF     +    PL    
Sbjct: 183 QIQGKGRDSKDDFVLLVDETLRPLRKYLASRG---ALSEKDPLFSSTSNRTNGEPLKERT 239

Query: 243 FQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               I++  R + +     TAH+LRH+  +  + NG  L   Q++  H    TT IY +
Sbjct: 240 ISWIIKETLRRIDIDDSRLTAHSLRHTAVSLSIKNGASLIQAQAMARHSDPKTTMIYFH 298


>gi|300901301|ref|ZP_07119398.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|300355266|gb|EFJ71136.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
          Length = 337

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 81/315 (25%), Positives = 127/315 (40%), Gaps = 44/315 (13%)

Query: 8   EIVSFE----LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT- 62
           E V+FE         + WL     +R LS+LT   +  D +            KI I T 
Sbjct: 34  EAVAFEKYTLYNHHNKEWLSKPTDKRRLSELTQIWW--DLKGKHEEHGKSNLGKIEIFTK 91

Query: 63  ------IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILN 115
                   Q++ + I  + + RR+Q I   S+ R L+ I   F   ++      E  I  
Sbjct: 92  ITNDPCAFQITKSLISQYCATRRSQGIKPSSINRDLTCISGMFTALIEAELFFGEHPIRG 151

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
            + LK+       L +++   L+             +D  N  I  L    G R  EA  
Sbjct: 152 TKRLKEEKPETGYLTQEEIALLL-----------AALDGDNKKIAILCLSTGARWGEAAR 200

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           L  +NI+ ++ T  ++ K +K R VP+  +V K I +           N +  LF     
Sbjct: 201 LKAENIIHNRVTF-VKTKTNKPRTVPISEAVAKMIAD-----------NKRGFLFPDADY 248

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  F+R ++       LP     H LRHSFATH + NGG + ++Q ILGH R+  T
Sbjct: 249 PR-----FRRTMK--AIKPDLPTGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQT 301

Query: 296 QIYTNVNSKNGGDWM 310
            +Y +   +   D +
Sbjct: 302 MVYAHFAPEYLQDAI 316


>gi|168789050|ref|ZP_02814057.1| integrase [Escherichia coli O157:H7 str. EC869]
 gi|261225024|ref|ZP_05939305.1| integrase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257629|ref|ZP_05950162.1| integrase [Escherichia coli O157:H7 str. FRIK966]
 gi|331678036|ref|ZP_08378711.1| integrase [Escherichia coli H591]
 gi|189371222|gb|EDU89638.1| integrase [Escherichia coli O157:H7 str. EC869]
 gi|320172729|gb|EFW47964.1| Integrase [Shigella dysenteriae CDC 74-1112]
 gi|323944901|gb|EGB40966.1| phage integrase [Escherichia coli H120]
 gi|324118070|gb|EGC11969.1| phage integrase [Escherichia coli E1167]
 gi|331074496|gb|EGI45816.1| integrase [Escherichia coli H591]
          Length = 337

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 81/315 (25%), Positives = 127/315 (40%), Gaps = 44/315 (13%)

Query: 8   EIVSFE----LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT- 62
           E V+FE         + WL     +R LS+LT   +  D +            KI I T 
Sbjct: 34  EAVAFEKYTLYNHHNKEWLSKPTDKRRLSELTQIWW--DLKGKHEEHGKSNLGKIEIFTK 91

Query: 63  ------IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILN 115
                   Q++ + I  + + RR+Q I   S+ R L+ I   F   ++      E  I  
Sbjct: 92  ITNDPCAFQITKSLISQYCATRRSQGIKPSSINRDLTCISGMFTALIEAELFFGEHPIRG 151

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
            + LK+       L +++   L+             +D  N  I  L    G R  EA  
Sbjct: 152 TKRLKEEKPETGYLTQEEIALLL-----------AALDGDNKKIAILCLSTGARWGEAAR 200

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           L  +NI+ ++ T  ++ K +K R VP+  +V K I +           N +  LF     
Sbjct: 201 LKAENIIHNRVTF-VKTKTNKPRTVPISEAVAKMIAD-----------NKRGFLFPDADY 248

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  F+R ++       LP     H LRHSFATH + NGG + ++Q ILGH R+  T
Sbjct: 249 PR-----FRRTMK--AIKPDLPTGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQT 301

Query: 296 QIYTNVNSKNGGDWM 310
            +Y +   +   D +
Sbjct: 302 MVYAHFAPEYLQDAI 316


>gi|9630357|ref|NP_046786.1| Int [Enterobacteria phage P2]
 gi|117624294|ref|YP_853207.1| putative phage integrase [Escherichia coli APEC O1]
 gi|168750144|ref|ZP_02775166.1| integrase [Escherichia coli O157:H7 str. EC4113]
 gi|168756346|ref|ZP_02781353.1| integrase [Escherichia coli O157:H7 str. EC4401]
 gi|168770061|ref|ZP_02795068.1| integrase [Escherichia coli O157:H7 str. EC4486]
 gi|168775961|ref|ZP_02800968.1| integrase [Escherichia coli O157:H7 str. EC4196]
 gi|168782415|ref|ZP_02807422.1| integrase [Escherichia coli O157:H7 str. EC4076]
 gi|168798987|ref|ZP_02823994.1| integrase [Escherichia coli O157:H7 str. EC508]
 gi|195937855|ref|ZP_03083237.1| putative phage integrase [Escherichia coli O157:H7 str. EC4024]
 gi|208807655|ref|ZP_03249992.1| integrase [Escherichia coli O157:H7 str. EC4206]
 gi|208813905|ref|ZP_03255234.1| integrase [Escherichia coli O157:H7 str. EC4045]
 gi|208818402|ref|ZP_03258722.1| integrase [Escherichia coli O157:H7 str. EC4042]
 gi|209400896|ref|YP_002271366.1| integrase [Escherichia coli O157:H7 str. EC4115]
 gi|254793910|ref|YP_003078747.1| integrase [Escherichia coli O157:H7 str. TW14359]
 gi|307314933|ref|ZP_07594523.1| integrase family protein [Escherichia coli W]
 gi|6136261|sp|P36932|VINT_BPP2 RecName: Full=Integrase
 gi|3139116|gb|AAD03297.1| Int [Enterobacteria phage P2]
 gi|115513418|gb|ABJ01493.1| putative phage integrase [Escherichia coli APEC O1]
 gi|187768624|gb|EDU32468.1| integrase [Escherichia coli O157:H7 str. EC4196]
 gi|188015634|gb|EDU53756.1| integrase [Escherichia coli O157:H7 str. EC4113]
 gi|189000073|gb|EDU69059.1| integrase [Escherichia coli O157:H7 str. EC4076]
 gi|189356536|gb|EDU74955.1| integrase [Escherichia coli O157:H7 str. EC4401]
 gi|189360964|gb|EDU79383.1| integrase [Escherichia coli O157:H7 str. EC4486]
 gi|189378536|gb|EDU96952.1| integrase [Escherichia coli O157:H7 str. EC508]
 gi|208727456|gb|EDZ77057.1| integrase [Escherichia coli O157:H7 str. EC4206]
 gi|208735182|gb|EDZ83869.1| integrase [Escherichia coli O157:H7 str. EC4045]
 gi|208738525|gb|EDZ86207.1| integrase [Escherichia coli O157:H7 str. EC4042]
 gi|209162296|gb|ACI39729.1| integrase [Escherichia coli O157:H7 str. EC4115]
 gi|254593310|gb|ACT72671.1| integrase [Escherichia coli O157:H7 str. TW14359]
 gi|306905639|gb|EFN36169.1| integrase family protein [Escherichia coli W]
 gi|315061400|gb|ADT75727.1| putative phage integrase [Escherichia coli W]
 gi|323378021|gb|ADX50289.1| integrase family protein [Escherichia coli KO11]
 gi|323951882|gb|EGB47756.1| phage integrase [Escherichia coli H252]
 gi|323961683|gb|EGB57287.1| phage integrase [Escherichia coli H489]
          Length = 337

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 81/315 (25%), Positives = 128/315 (40%), Gaps = 44/315 (13%)

Query: 8   EIVSFE----LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT- 62
           E V+FE         + WL     +R LS+LT   +  D +            KI I T 
Sbjct: 34  EAVAFEKYTLYNHHNKEWLSKPTDKRRLSELTQIWW--DLKGKHEEHGKSNLGKIEIFTK 91

Query: 63  ------IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILN 115
                   Q++ + I  + + RR+Q I   S+ R L+ I   F   ++      E  I  
Sbjct: 92  ITNDPCAFQITKSLISQYCATRRSQGIKPSSINRDLTCISGMFTALIEAELFFGEHPIRG 151

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
            + LK+       L +++   L+             +D  N  I  L    G R  EA  
Sbjct: 152 TKRLKEEKPETGYLTQEEIALLL-----------AALDGDNKKIAILCLSTGARWGEAAR 200

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           L  +NI+ ++ T  ++ K +K R VP+  +V K I +           N +  LF     
Sbjct: 201 LKAENIIHNRVTF-VKTKTNKPRTVPISEAVAKMIAD-----------NKRGFLFPDADY 248

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  F+R ++       LP+    H LRHSFATH + NGG + ++Q ILGH R+  T
Sbjct: 249 PR-----FRRTMK--AIKPDLPMGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQT 301

Query: 296 QIYTNVNSKNGGDWM 310
            +Y +   +   D +
Sbjct: 302 MVYAHFAPEYLQDAI 316


>gi|227461180|gb|ACP39537.1| putative integron integrase [uncultured microorganism]
          Length = 306

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 67/311 (21%), Positives = 114/311 (36%), Gaps = 60/311 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           R L+  T QSY    R ++ F              R+L    +  F++     +K+G  +
Sbjct: 18  RHLAYRTEQSYLYWIRGYVAFHHRRHP--------RELGAPGVEQFLTHLAVNRKVGAST 69

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++L  +  F + +    +     + N+    +S  LP  L   +  +++  V      
Sbjct: 70  QNQALQALLFFYRQVLGLDL---PWLENVTRAPRSRRLPVVLGRSEVRSILAFVEGTPGL 126

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
               +      +L            AL L  ++++ ++STL I+        V +LP   
Sbjct: 127 VAGLLYGGGLRLLE-----------ALRLRVKDVVFERSTLVIRDAKGGKDRVTILPDAM 175

Query: 208 KAILEYYDLC---PFDLNLNIQLP-----------------------LFRGIRGKP---- 237
              L  +       FDL      P                       +F           
Sbjct: 176 AMPLRAHVARLHIWFDLERQRGAPGVSVPGALARKYRGVATQWGWQYIFPSRNLCRDPYS 235

Query: 238 -------LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
                  L+    QR ++Q  R  G+    + HT RH FATHLL +G D+R++Q +LGH 
Sbjct: 236 GQWIRHHLHEQTVQRAVKQAVRRAGIQQPASCHTFRHCFATHLLEDGYDIRTVQELLGHS 295

Query: 291 RLSTTQIYTNV 301
            + TT IYT+V
Sbjct: 296 DVKTTMIYTHV 306


>gi|29028384|gb|AAO64735.1| integrase [Enterobacteria phage P2]
          Length = 337

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 81/315 (25%), Positives = 128/315 (40%), Gaps = 44/315 (13%)

Query: 8   EIVSFE----LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT- 62
           E V+FE         + WL     +R LS+LT   +  D +            KI I T 
Sbjct: 34  EAVAFEKYTLYNHHNKEWLSKPTDKRRLSELTQIWW--DLKGKHEEHGKSNLGKIEIFTK 91

Query: 63  ------IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILN 115
                   Q++ + I  + + RR+Q I   S+ R L+ I   F   ++      E  I  
Sbjct: 92  ITNDPCAFQITKSLISQYCATRRSQGIKPSSINRDLTCISGMFTALIEAELFFGEHPIRG 151

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
            + LK+       L +++   L+             +D  N  I  L    G R  EA  
Sbjct: 152 TKRLKEEKPETGYLTQEEIALLL-----------AALDGDNKKIAILCLSTGARWGEAAR 200

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           L  +NI+ ++ T  ++ K +K R VP+  +V K I +           N +  LF     
Sbjct: 201 LKAENIIHNRVTF-VKTKTNKPRTVPISEAVAKMIAD-----------NKRGFLFPDADY 248

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  F+R ++       LP+    H LRHSFATH + NGG + ++Q ILGH R+  T
Sbjct: 249 PR-----FRRTMK--AIKPDLPMGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQT 301

Query: 296 QIYTNVNSKNGGDWM 310
            +Y +   +   D +
Sbjct: 302 MVYAHFAPEYLTDAI 316


>gi|256423767|ref|YP_003124420.1| integrase family protein [Chitinophaga pinensis DSM 2588]
 gi|256038675|gb|ACU62219.1| integrase family protein [Chitinophaga pinensis DSM 2588]
          Length = 284

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 114/293 (38%), Gaps = 31/293 (10%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           + QN+LQ               Y   T++ L        E    ++I ++S   I  F  
Sbjct: 7   QFQNYLQ------------QSGYGLSTQRMLPACVREFLEYGGFKSIVEISPGIIVLFYE 54

Query: 77  KRRTQKIGDRS-------LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
               + +  RS       +   +  +K F  + +       + +  ++  + ++    AL
Sbjct: 55  WLHIRPLKYRSGALSGIMISHYVYALKVFFSWQESSDGLQYNPMSGLKFRRHASGRREAL 114

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           + +    L           T  I  R   +L+L Y CGLR SEA  L  +++      L 
Sbjct: 115 SVEVVEALF----------TAAISMREKVMLHLFYSCGLRRSEAEMLNVRDVQVRHRLLY 164

Query: 190 IQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           ++ GKG   R++PL   V   +  Y +       +  +        G+ ++   + R ++
Sbjct: 165 VRSGKGASRRVIPLTGKVAGELGVYLEEYRKSGAVE-KGAFMLNREGRRMSGSSYNRLLK 223

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            L    GL    + H LRHS ATHLL  G  L  ++  LGH  L  TQIY  V
Sbjct: 224 GLVGRAGLWQGISLHYLRHSIATHLLQGGMSLEYVRDFLGHRHLEATQIYAKV 276


>gi|126664742|ref|ZP_01735726.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126664865|ref|ZP_01735849.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126666647|ref|ZP_01737625.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126666885|ref|ZP_01737861.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126667760|ref|ZP_01738728.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126669121|ref|ZP_01740050.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126626417|gb|EAZ97085.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126627863|gb|EAZ98492.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126628601|gb|EAZ99222.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126629035|gb|EAZ99654.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126631068|gb|EBA01682.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126631191|gb|EBA01805.1| integrase/recombinase [Marinobacter sp. ELB17]
          Length = 417

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 116/311 (37%), Gaps = 15/311 (4%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M     P +    +  E   + + L    GLS  T  S       FL  +          
Sbjct: 107 MRSQPSPTMAKDPVTIELTRFAEYLTDTCGLSSATRDSRAQHVGAFLYDVGVT-----DT 161

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            ++  LS T+I A+ S   T ++   SL+   + ++S+ +Y   R   T+     +  + 
Sbjct: 162 VSVLSLSATDIDAYFSTL-TSRLRPASLRIVCNSLRSYFRYRAVRGDETDGLAAALPRIA 220

Query: 121 KSNS--LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
                 LP+ L++ +    +D         T  +  R+ AI   L   GLR  E   LT 
Sbjct: 221 DWRRATLPKVLSDAELTAFLDAF-----DRTDPVGLRDYAIARCLLDLGLRGHEVTYLTL 275

Query: 179 QNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
           ++I   ++ L I G K  +I+ +PL  S  +A+ +Y                 R     P
Sbjct: 276 ESIDWRRAILTISGTKSKRIQQLPLPASTGEAVAQYLRQGRPQTTSRRLFVRHRAPLDTP 335

Query: 238 LNPGVFQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           L+    +  + +     GL       H LR + AT L   G  ++ I  +L H  L T  
Sbjct: 336 LSVPAIRNSMNRAFVRCGLRDQFCNTHVLRRTMATQLQRAGVSVKEIADVLRHKSLDTAY 395

Query: 297 IYTNVNSKNGG 307
            Y  V+ +   
Sbjct: 396 SYARVDVEQLR 406


>gi|44004569|ref|NP_982238.1| integrase/recombinase, putative [Bacillus cereus ATCC 10987]
 gi|208702025|ref|YP_002267328.1| integrase/recombinase, putative [Bacillus cereus H3081.97]
 gi|217956830|ref|YP_002335924.1| integrase/recombinase, putative [Bacillus cereus AH187]
 gi|42741635|gb|AAS45080.1| integrase/recombinase, putative [Bacillus cereus ATCC 10987]
 gi|208657880|gb|ACI30250.1| integrase/recombinase, putative [Bacillus cereus H3081.97]
 gi|217068527|gb|ACJ82775.1| putative integrase/recombinase [Bacillus cereus AH187]
          Length = 347

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 66/286 (23%), Positives = 119/286 (41%), Gaps = 29/286 (10%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +  S+ T Q Y  D   FL ++        TI TI++LS+ ++  +  +  ++K    +L
Sbjct: 59  KKRSERTKQQYLHDLSHFLRYIKE------TIGTIQELSHNDMEIYFYQL-SKKYAATTL 111

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQALTLVDNVLLHTS 146
           +R  + ++ FLKY+      +++    ++ +  KK   + R L  ++   ++D       
Sbjct: 112 RRKKTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLFPEEVNEILD------- 164

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKGDKIRIVPL 202
              K  +    ++ +LL   GLRI E  +    +       +   LR+ GKG+K R V +
Sbjct: 165 -TLKKTNFFMYSLFFLLTTTGLRIEEVANAKWADLAFHPSLNVYLLRVVGKGNKTREVRI 223

Query: 203 LPSVRKAILEYYDLCPF--DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-- 258
              V   +     L     +L+ +          G         +Y+ +      LP   
Sbjct: 224 FEDVLNDLCRLRQLRKQTSELDASSSSAFLPKADGSHYRADYLSKYVAEKIEETNLPFLR 283

Query: 259 ----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                 T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y  
Sbjct: 284 YRKDRITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLR 329


>gi|300923563|ref|ZP_07139594.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|300420171|gb|EFK03482.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
          Length = 337

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 81/315 (25%), Positives = 128/315 (40%), Gaps = 44/315 (13%)

Query: 8   EIVSFE----LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT- 62
           E V+FE         + WL     +R LS+LT   +  D +            KI I T 
Sbjct: 34  EAVAFEKYTLYNHHNKEWLSKPTDKRRLSELTQIWW--DLKGKHEEHGKSNLGKIEIFTK 91

Query: 63  ------IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILN 115
                   Q++ + I  + + RR+Q I   S+ R L+ I   F   ++      E  I  
Sbjct: 92  ITNDPCAFQITKSLISQYCATRRSQGIKPSSINRDLTCISGMFTALIEAELYFGEHPIRG 151

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
            + LK+       L +++   L+             +D  N  I  L    G R  EA  
Sbjct: 152 TKRLKEEKPDTGYLTQEEIALLL-----------AALDGDNKKIAILCLSTGARWGEAAR 200

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           L  +NI+ ++ T  ++ K +K R VP+  +V K I +           N +  LF     
Sbjct: 201 LKAENIIHNRVTF-VKTKTNKPRTVPISEAVAKMIAD-----------NKRGFLFPDADY 248

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  F+R ++       LP+    H LRHSFATH + NGG + ++Q ILGH R+  T
Sbjct: 249 PR-----FRRTMK--AIKPDLPMGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQT 301

Query: 296 QIYTNVNSKNGGDWM 310
            +Y +   +   D +
Sbjct: 302 MVYAHFAPEYLQDAI 316


>gi|62768244|gb|AAY00032.1| putative integrase/recombinase [uncultured bacterial symbiont of
           Discodermia dissoluta]
          Length = 410

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 111/294 (37%), Gaps = 16/294 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
             + ++L   RGL+  T   Y     + L FL F          +  L   ++  F+   
Sbjct: 114 DAYREHLGQVRGLATSTQTEYRRVALKLLDFLGF----DHDPAVLTTLDGPQLDKFVRSL 169

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNEKQALT 136
             +  G   L+   S ++SFL++L  R         +  + +      LPRAL  +  L 
Sbjct: 170 -AKGCGLSKLQNRASFLRSFLRFLAGRGEIVAGLDQSFDSPRVPRRACLPRALPWESVLA 228

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGD 195
            +  +    +   +     + A+  L+   GLR SE  +L   +I    +  R+Q  K  
Sbjct: 229 FLAGISRDAARGRR-----DYAMFLLIATYGLRSSEIAALLLDDISWRSAQFRVQRPKVL 283

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI--RQLRRY 253
               +PL      A+ +Y        + +  + L      +PL+    Q     R     
Sbjct: 284 APITLPLTDEAGAALADYLRHA-RPQSTHRAVFLTLRQPTRPLSTRGIQSVFSRRIAAGD 342

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           L +      H LRHS A HLL     ++ I  +LGH  +++T  Y  V  ++  
Sbjct: 343 LSIEGKVGPHILRHSLALHLLRQHTSVKVIGDLLGHRSVASTGGYLRVYEEHLR 396


>gi|254162098|ref|YP_003045206.1| integrase [Escherichia coli B str. REL606]
 gi|253973999|gb|ACT39670.1| integrase [Escherichia coli B str. REL606]
          Length = 337

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 81/315 (25%), Positives = 127/315 (40%), Gaps = 44/315 (13%)

Query: 8   EIVSFE----LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT- 62
           E V+FE         + WL     +R LS+LT   +  D +            KI I T 
Sbjct: 34  EAVAFEKYTLYNHHNKKWLSKPTDKRRLSELTQIWW--DLKGKHEEHGKSNLGKIEIFTK 91

Query: 63  ------IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILN 115
                   Q++ + I  + + RR+Q I   S+ R L+ I   F   ++      E  I  
Sbjct: 92  ITNDPCAFQITKSLISQYCATRRSQGIKPSSINRDLTCISGMFTALIEAELFFGEHPIRG 151

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
            + LK+       L +++   L+             +D  N  I  L    G R  EA  
Sbjct: 152 TKRLKEEKPETGYLTQEEIALLL-----------AALDGDNKKIAILCLSTGARWGEAAR 200

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           L  +NI+ ++ T  ++ K +K R VP+  +V K I +           N +  LF     
Sbjct: 201 LKAENIIHNRVTF-VKTKTNKPRTVPISEAVAKMIAD-----------NKRGFLFPDADY 248

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  F+R ++       LP     H LRHSFATH + NGG + ++Q ILGH R+  T
Sbjct: 249 PR-----FRRTMK--AIKPDLPTGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQT 301

Query: 296 QIYTNVNSKNGGDWM 310
            +Y +   +   D +
Sbjct: 302 MVYAHFAPEYLQDAI 316


>gi|294499284|ref|YP_003562984.1| phage integrase family protein [Bacillus megaterium QM B1551]
 gi|294349221|gb|ADE69550.1| phage integrase family protein [Bacillus megaterium QM B1551]
          Length = 360

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 73/325 (22%), Positives = 136/325 (41%), Gaps = 38/325 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q +     I++ LS  T++SY  D +  L F   + E +IT+++I    + E++ F  +
Sbjct: 43  IQLFFSMRIIKKSLSPHTIRSYNQDMKTILSF---FYEREITLKSI---GFMEVKLFNEE 96

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-----------KKSNSLP 126
              Q   +R+  R L   +  L++              +              K++ +  
Sbjct: 97  MMNQ-YANRTAARKLEFFRRMLEFGHATHFYPSLYTTWIEKPSISKGHYSDKEKQNRTEY 155

Query: 127 RALNEKQALTLVD--NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           R L +++A  +V+    ++      K   ARN  +  LLY  G+R SE LSL   +  +D
Sbjct: 156 RELTDREAQVIVNALESVVRIRQHEKEFKARNRLMGMLLYMSGMRSSELLSLNWGSFRED 215

Query: 185 QS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF--DLNLNIQLPLFRGIRGK--- 236
           +     + + GKG K R +P+   V++ +  Y        +L+     PLF  I+     
Sbjct: 216 RRGNLVVDVIGKGKKERTIPVFDDVKETLFTYRQALNESTELSPFDTDPLFYSIKEYYRT 275

Query: 237 ----PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                L+     R I+     +    S + H  RH+F T+ L+N   L  ++ ++GH  +
Sbjct: 276 GEKKRLSYTTLYRTIKSAVYKVKGNASISPHWFRHTFITNSLANDVPLAVVKQVVGHSSI 335

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQT 317
           +TT +Y     ++       +YD  
Sbjct: 336 ATTNVYLEKLQEDT------VYDAF 354


>gi|289578559|ref|YP_003477186.1| integrase [Thermoanaerobacter italicus Ab9]
 gi|289528272|gb|ADD02624.1| integrase family protein [Thermoanaerobacter italicus Ab9]
          Length = 398

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 58/345 (16%), Positives = 120/345 (34%), Gaps = 48/345 (13%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           EGN   E          + WL+    E  L+  TL  Y+         L       +   
Sbjct: 60  EGNLFVEPSKLTFKAFIEKWLKEYA-ENNLAPKTLHRYK-------EMLEKRIIPALGHL 111

Query: 62  TIRQLSYTEIRAFISKRRT---------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
            + ++    +  F++  +            +  +++K     I +  +   K ++   + 
Sbjct: 112 KLDKIKPIHVLEFLNMLKEDGARLDGKEGGLSPQTIKHHYRLIHAIFEDAVKWQLIPSNP 171

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
             N+   K         NE++   L+  +             +    + +    GLRI E
Sbjct: 172 ASNIEPPKVPKKEAGYYNEEEVRKLIKALENEK--------LKYKVAVMVTLAAGLRIGE 223

Query: 173 ALSLTPQNIMDDQSTLRIQ----------------GKGDKIRIVPLLPSVRKAILEYYDL 216
            + L  ++I  + + ++I+                      R++ +   +   + EY   
Sbjct: 224 LMGLKWEHIDFENNIIKIEQANQYLPGEGTFTKNPKTETSKRLIAMPKEIMDLLREYKKE 283

Query: 217 CPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
              +      +      +F    G+P+ P  F ++  +     GL    T H LRH+ AT
Sbjct: 284 QNIERLKKGSMWIDTGYVFTQWNGQPMYPYTFTKWFPKFLEKHGL-RRITFHQLRHTSAT 342

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYD 315
            L++ G ++R++ + LGH   STT  IY +       +   +I +
Sbjct: 343 LLINAGENVRTVSARLGHSNTSTTMNIYAHALKSADRNAADKIAN 387


>gi|42519103|ref|NP_965033.1| site-specific tyrosine recombinase XerS [Lactobacillus johnsonii
           NCC 533]
 gi|41583390|gb|AAS08999.1| hypothetical protein LJ_1177 [Lactobacillus johnsonii NCC 533]
 gi|329667361|gb|AEB93309.1| site-specific tyrosine recombinase XerS [Lactobacillus johnsonii
           DPC 6026]
          Length = 356

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 66/352 (18%), Positives = 135/352 (38%), Gaps = 42/352 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT------ 54
           ME N   E++  EL     ++++   +    S  T   Y  + R+F  +L          
Sbjct: 1   METNKYLELIKQEL-ANMPDFVKEYNLGTSHSLTTTYQYLTEIRRFFDWLRQNNIASVSS 59

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKI------GDRSLKRSLSGIKSFLKY------- 101
            ++I + T+  L   ++  +I   +  K          ++ RS++ ++S  K+       
Sbjct: 60  NKEIEVTTLENLQRNDVMLYIHHLKHTKNQQGRLNSPTTINRSINALRSLYKFLTITSDN 119

Query: 102 LKKRKITTESNILNMRNLKKSNSL---PRALN--------EKQALTLVDNVLLHTSHET- 149
                    + +L + +L  + +L      L         + Q L  ++N  +H  ++  
Sbjct: 120 NHGEPYFDRNVMLKINSLNDTKTLNYRAHVLESHMYMGDLKYQFLDFIENEYIHKCNKQS 179

Query: 150 ----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
               K    R+ AI+ L+ G G+R+SE + +  +NI    + L +  KG +   VP+   
Sbjct: 180 LPAFKKNHERDMAIIALILGTGIRVSECVGVNMRNINLKDAMLDVTRKGGQKDSVPIAEW 239

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLSTT 261
               + +Y ++     +   +   F   R       +     ++ + +     G     T
Sbjct: 240 TIPYLKKYREIRADHYHAEKEDIAFFLTRWHGKTKRITTNAVEKMVNKYSAAFG--KPLT 297

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            H LRH+ A+ L     D   +   LG    + T +YT+V+ K     + +I
Sbjct: 298 PHKLRHTLASELYEVTKDQVLVAQQLGQKGTTATDLYTHVDQKKQKAALNKI 349


>gi|323703102|ref|ZP_08114757.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
 gi|323531996|gb|EGB21880.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
          Length = 317

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 60/313 (19%), Positives = 121/313 (38%), Gaps = 39/313 (12%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           ++L + +  +  T ++Y    +  +     +         ++ +   +++   +K     
Sbjct: 10  KHLFLYKIYAISTWKNYYRSIKNHIFPALGHIL-------LKDIKTDDVQRLYNKMAKAG 62

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +   +++R+   I S L    K K+ + +    ++  K +++  R +  ++    +  + 
Sbjct: 63  LAPATIRRNHQIIHSCLNQAVKNKLLSWNPADAVKLPKLNDTPVRTMTPEEMAKFISVLE 122

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----------- 191
                     D   +A L LL G G+ + E L+L  Q+I      L I            
Sbjct: 123 ---------NDLWGAAFLTLL-GTGISLGELLALRWQDIDLKSKVLTINQALARTKSRGL 172

Query: 192 -----GKGDKIRIVPLLPSVRKAILEYYDLCPFDL-----NLNIQLPLFRGIRGKPLNPG 241
                      R +P+   V +A+ ++                 Q  +F    G P++P 
Sbjct: 173 IFVEPKTDKSKRTIPMPEPVAEALQKHRVQMAQIKLAAGPKYTDQDLVFCTTYGTPIHPR 232

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTN 300
            F R    LR    +P     H LRH+FAT LL  G +L+ +Q +LGH  +STT   Y++
Sbjct: 233 NFTRKFYTLREKAKVPKDINLHALRHTFATRLLEEGENLKVVQDLLGHADISTTANTYSH 292

Query: 301 VNSKNGGDWMMEI 313
           V+         ++
Sbjct: 293 VSPDVKRKAAAKM 305


>gi|224418352|ref|ZP_03656358.1| integrase-recombinase protein XERCD family [Helicobacter canadensis
           MIT 98-5491]
 gi|253827673|ref|ZP_04870558.1| integrase/recombinase XerD [Helicobacter canadensis MIT 98-5491]
 gi|313141883|ref|ZP_07804076.1| integrase-recombinase protein xercd family protein [Helicobacter
           canadensis MIT 98-5491]
 gi|253511079|gb|EES89738.1| integrase/recombinase XerD [Helicobacter canadensis MIT 98-5491]
 gi|313130914|gb|EFR48531.1| integrase-recombinase protein xercd family protein [Helicobacter
           canadensis MIT 98-5491]
          Length = 353

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 60/284 (21%), Positives = 124/284 (43%), Gaps = 21/284 (7%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y     +   +L +     + + +++++    ++ F++   T  + D + K     +
Sbjct: 73  INTYIIPLLKLYEYLNY-----LGLASLKEVDEEMLKEFLT-INTSSLSDATKKNYRVAL 126

Query: 96  KSFLKYLKKRKITTE--SNILNMRNL-------KKSNSLPRALNEKQALTLVDNVLLHTS 146
            +F  ++ K+    +  S I  +          K    LP  + E++    +  +  +  
Sbjct: 127 INFFGFIDKQNEDDDGTSYIFRIELKNWGGLRGKSGQKLPSYMIEEEVQRFLKGIDTY-P 185

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLP 204
            + + + ARN  +L ++   G+R+ E+L+L  ++I    D   ++++GKG+K R+V +  
Sbjct: 186 FKHQDLGARNRLLLKVIIYTGIRVGESLNLKIKDITLDGDFYVIQVRGKGNKPRVVMI-- 243

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AH 263
             +    ++        N      LF   +GK L      R + Q+    G+      AH
Sbjct: 244 KAKNISNDFSLWINSRPNEVENDLLFCNHKGKKLTQAYVSRIVEQVLLTNGIRKEKNGAH 303

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            LRHSFAT L     DL  +Q  LGH  + T++IYT+ + +   
Sbjct: 304 MLRHSFATLLYQKSQDLVLVQEALGHASVETSRIYTHFDKQKLK 347


>gi|320352375|ref|YP_004193714.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320120877|gb|ADW16423.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 344

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 67/316 (21%), Positives = 128/316 (40%), Gaps = 30/316 (9%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           ++L E  + ++      +L+    E   S  T+     D R     L  +          
Sbjct: 52  DHLVEGSAPKIKDVVTLFLEWYRTEN--SINTV----NDMR---FCLDNHIIPWFGNFQP 102

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKS 122
           +QL+      F +    + +   ++ +++S + S LK+  +            R + KK+
Sbjct: 103 KQLTIALFNKFKADLLERGLAPVTINKNMSYLSSLLKWASEHGYCQPLAFTIPRFSKKKT 162

Query: 123 NSLP-RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
            + P + L  +Q   L +            +D     +  L+   GLR  EAL+L  ++I
Sbjct: 163 TAEPVQPLTRRQLDALYEC-----------LDPEYRLLFLLMADHGLRKEEALNLQVEDI 211

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
            + + T+R+ GKG K RIVP L       + + +     L+  ++  L            
Sbjct: 212 DEARKTIRVYGKGSKYRIVPFLS------VRFEEELNKVLSERLEGFLVVNPATGKPYYS 265

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTN 300
             ++ + +  +  GL      H LRH+F +     G +  ++Q I+GH  + TT +IYT+
Sbjct: 266 -IRKVLTRAAKKAGLSRQVYHHLLRHTFGSLAAEAGMNPYALQRIMGHSNIETTNKIYTH 324

Query: 301 VNSKNGGDWMMEIYDQ 316
           V     G+   +I +Q
Sbjct: 325 VGLDFVGEEARKIREQ 340


>gi|221642149|ref|YP_002533236.1| integrase/recombinase, putative [Bacillus cereus Q1]
 gi|221243084|gb|ACM15793.1| integrase/recombinase, putative [Bacillus cereus Q1]
          Length = 347

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 121/293 (41%), Gaps = 29/293 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +  S+ T + Y  D   FL ++        +I TI++LS+ E+  +  +  ++K    +L
Sbjct: 59  KKRSERTKKLYLHDLSHFLRYIKE------SIGTIKELSHNEVEIYFYQL-SKKYAASTL 111

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQALTLVDNVLLHTS 146
           +R  + ++ FLKY+      +++    ++ +  KK   + R L  ++   ++D       
Sbjct: 112 RRKKTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLFPEEVNEILD------- 164

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKGDKIRIVPL 202
              K  +    ++ +LL   GLRI E  +    +       +   LR+ GKG+K R V +
Sbjct: 165 -TLKKTNFFMYSLFFLLTTTGLRIEEVANAKWADLAFHPSLNVYLLRVVGKGNKTREVRI 223

Query: 203 LPSVRKAILEYYDLCPF--DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-- 258
              V   +     L     +L+ +          G         +Y+ +      LP   
Sbjct: 224 FEDVLNDLCRLRQLRKQTSELDASSSSAFLPKADGSHYRADYLSKYVAEKIEETNLPFLR 283

Query: 259 ----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                 T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y    ++   
Sbjct: 284 YRKDRITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLRERTRRQN 336


>gi|167757961|ref|ZP_02430088.1| hypothetical protein CLOSCI_00297 [Clostridium scindens ATCC 35704]
 gi|167664393|gb|EDS08523.1| hypothetical protein CLOSCI_00297 [Clostridium scindens ATCC 35704]
          Length = 349

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/312 (16%), Positives = 115/312 (36%), Gaps = 35/312 (11%)

Query: 16  KERQNWLQNLEIER--GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +E+ N+L +L   +   L+K T+  Y     + +  +          + +  +   +I  
Sbjct: 61  EEKNNYLIDLYRLKKSRLAKETMDQYIGAITRLITQVD---------KPLTDIDEIDIDY 111

Query: 74  FISKRRTQKIG-------DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           ++     + +          +       + +F  +L+K K  T + +  +   ++     
Sbjct: 112 YLRYYENRNVKNNRGKNQASTCNNERRYLSAFFTWLRKEKFVTYNPVECVEPKRERRKPI 171

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
                 Q   L +            I  R+ A++  L   G R+ E + +   +I  +  
Sbjct: 172 DYFRPGQMEELREGC----------ITLRDRALVEALRSTGARVGEIVPINRDDIDWNTG 221

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            + I G KG + R++ L    R  + +Y +    +   N  L ++       L+    + 
Sbjct: 222 DVTILGEKGGRYRVIYLDEVARYHLRKYLESRKDE---NEALFVWERSPHNRLDKTGIRA 278

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            ++ +    GL      H +R +    L + G D+  IQ ILGH   + T  Y    +++
Sbjct: 279 SLKTIAGRAGLKCRVYPHKMRKTLGMQLKNQGVDIGDIQEILGHSNPNVTSRY---YAES 335

Query: 306 GGDWMMEIYDQT 317
             D + ++  + 
Sbjct: 336 TPDTLRDVRRRA 347


>gi|296455012|ref|YP_003662156.1| phage integrase family protein [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296184444|gb|ADH01326.1| phage integrase family protein [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 351

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 63/332 (18%), Positives = 119/332 (35%), Gaps = 26/332 (7%)

Query: 12  FELLKERQNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
            +  +  ++WL + L   RG S  T+++Y      ++ +L      + +           
Sbjct: 14  PDFWRVARDWLHHWLPKVRGSSPKTVEAYRIGLESYVRWLETTEGTQRSHIGFGHFDRAR 73

Query: 71  IRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTE---SNILNMRNLKKSNSLP 126
           +  ++   RT+    DR++   ++ ++ FL +            ++   +R    +    
Sbjct: 74  LGRWVEWMRTERGYSDRTIMPRMTTMRVFLDHAGLEHPALTALGNDAAGIRVKPPAREPV 133

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ- 185
             L E+    L+       +   +     N  +  L+Y    RI E  +LT  ++  D+ 
Sbjct: 134 DHLGEEHTKALLTAWGTGDAKSRR-----NRMLPILMYDTAARIGELAALTIADVGMDKP 188

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRG---KPLNPG 241
           + + + GK  K R+VPL    R  +  Y +   P     +   PLF   R    +PL+  
Sbjct: 189 ARVTLTGKRGKSRVVPLGERTRTHLAAYLEEFHPGPSTRDGDRPLFHSTRNGAIQPLSVD 248

Query: 242 VFQRYIRQLRRYL------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                 +             +P     H +R + A  L   G  L  I  +LGH  +STT
Sbjct: 249 RIDEIPKTAAARARRGTCPSMPERVHCHLIRRTRAMDLYQQGVPLPLIMQLLGHESMSTT 308

Query: 296 Q-IYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
              Y         D M +  D  +P      +
Sbjct: 309 SAFYAFAT----LDMMRKAVDAANPGPDPSKE 336


>gi|227890002|ref|ZP_04007807.1| site-specific tyrosine recombinase XerS [Lactobacillus johnsonii
           ATCC 33200]
 gi|227849446|gb|EEJ59532.1| site-specific tyrosine recombinase XerS [Lactobacillus johnsonii
           ATCC 33200]
          Length = 356

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/352 (18%), Positives = 135/352 (38%), Gaps = 42/352 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT------ 54
           ME N   E++  EL     ++++   +    S  T   Y  + R+F  +L          
Sbjct: 1   METNKYLELIKQEL-ANMPDFVKEYNLGTSHSLTTTYQYLTEIRRFFDWLRQNNIASVSS 59

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKI------GDRSLKRSLSGIKSFLKY------- 101
            ++I + T+  L   ++  +I   +  K          ++ RS++ ++S  K+       
Sbjct: 60  NKEIEVTTLENLQRNDVMLYIHHLKHTKNQQGRLNSPTTINRSINALRSLYKFLTITSDN 119

Query: 102 LKKRKITTESNILNMRNLKKSNSL---PRALN--------EKQALTLVDNVLLHTSHET- 149
                    + +L + +L  + +L      L         + Q L  ++N  +H  ++  
Sbjct: 120 NHGEPYFDRNVMLKINSLNDTKTLNYRAHVLESHMYMGDLKYQFLDFIENEYVHKCNKQS 179

Query: 150 ----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
               K    R+ AI+ L+ G G+R+SE + +  +NI    + L +  KG +   VP+   
Sbjct: 180 LPAFKKNHERDMAIIALILGTGIRVSECVGVNMRNINLKDAMLDVTRKGGQKDSVPIAAW 239

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLSTT 261
               + +Y ++     +   +   F   R       +     ++ + +     G     T
Sbjct: 240 TIPYLKKYREIRADRYHAEKEDTAFFLTRWHGKTKRITTNAVEKMVNKYSAAFG--KPLT 297

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            H LRH+ A+ L     D   +   LG    + T +YT+V+ K     + +I
Sbjct: 298 PHKLRHTLASELYEVTKDQVLVAQQLGQKGTTATDLYTHVDQKKQKAALNKI 349


>gi|303239646|ref|ZP_07326171.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302592817|gb|EFL62540.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 333

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 71/318 (22%), Positives = 132/318 (41%), Gaps = 29/318 (9%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+  N    V   L    + +L   E E  LS  T++ YE + ++F+ +L+   E  +  
Sbjct: 1   MKNTN----VKISLRDSFELFLDRCERE-NLSPSTIKFYEDNMKRFIKYLSI--EHNLQN 53

Query: 61  QTIRQLSYTEIRAFISK--------------RRTQKIGDRSLKRSLSGIKSFLKYLKKRK 106
             I   +   I  +++K               R +K+G +S+K     +++   +     
Sbjct: 54  PLIPDFNSVHINKYLAKIKKSKKWNGHTHIKAREEKVGSQSIKTYARALRAIGNWFFTED 113

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
             +E+ I  +   K + S    L + +   ++             +  RNS I  L +  
Sbjct: 114 YISENIIETVDLPKAAKSDKEVLCDDEIKAIITKF-----DTKTKLGLRNSIIFLLAFDA 168

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G+R     +L   ++     TLR++ KG  I ++PL  +V   I EY        NLN  
Sbjct: 169 GIRQGGIANLKIGDVDLKAKTLRVRLKGGNITVLPLGNTVLWQIKEYIVKYRGIDNLNE- 227

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
            PL   I G  L     ++   +L++  G+ +    H  RH+FAT+ +S G   + +Q  
Sbjct: 228 -PLLTNINGSKLTENAIKKMFSKLKKKSGV-IRVNCHLGRHTFATNYISEGHTQQELQLA 285

Query: 287 LGHFRLSTTQIYTNVNSK 304
           L H   + ++ Y +++ K
Sbjct: 286 LAHESDTMSKEYVHLDEK 303


>gi|32474105|ref|NP_867099.1| integrase/recombinase [Rhodopirellula baltica SH 1]
 gi|32474789|ref|NP_867783.1| integrase/recombinase y4qk [Rhodopirellula baltica SH 1]
 gi|32444642|emb|CAD74644.1| putative integrase/recombinase [Rhodopirellula baltica SH 1]
 gi|32445329|emb|CAD75330.1| putative integrase/recombinase y4qk [Rhodopirellula baltica SH 1]
          Length = 282

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 117/291 (40%), Gaps = 29/291 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G    T+  Y           A          +  +LS  ++R ++   R Q++   S++
Sbjct: 5   GKQPSTIACYRNAIAHLAEHFAC---------SPEKLSEAQVRQYVL-LRRQQLQLGSMR 54

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             +  +K F +    R        L      KSN+LP  L  ++   L+D  +       
Sbjct: 55  PIVGALKFFFRVTVPRDW----PTLQAIRFPKSNTLPMVLVPERCWQLIDATVAS----- 105

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRK 208
                    I   +Y CGLR  +   L PQ++  D+  LR+   KG + R VPL  +   
Sbjct: 106 -----HLQVIFRAMYSCGLRGVDVRHLRPQDVDADRMMLRVCTTKGHRQREVPLPQATLD 160

Query: 209 AILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-STTAHTL 265
           A   ++     P  L    Q         +P++    QR   ++   LG      T HTL
Sbjct: 161 AFRAHWATHRNPNWLFPATQRNTPASKADQPISARTIQRGFTKVTESLGWQDSGLTPHTL 220

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           RHS+AT +L  G +L+ +Q  LGH  L  T++Y ++  + G +   +I  Q
Sbjct: 221 RHSYATAMLDAGVNLKVLQGYLGHKNLQATEVYLHLT-RLGDERARQIVAQ 270


>gi|190015705|ref|YP_001967309.1| phage integrase family protein [Bacillus cereus]
 gi|116584612|gb|ABK00729.1| phage integrase family protein [Bacillus cereus]
          Length = 319

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/286 (23%), Positives = 119/286 (41%), Gaps = 29/286 (10%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +  S+ T Q Y  D   FL ++        TI TI++LS+ ++  +  +  ++K    +L
Sbjct: 31  KKRSERTKQQYLHDLSHFLRYIKE------TIGTIQELSHNDMEIYFYQL-SKKYAATTL 83

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQALTLVDNVLLHTS 146
           +R  + ++ FLKY+      +++    ++ +  KK   + R L  ++   ++D       
Sbjct: 84  RRKKTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLFPEEVNEILD------- 136

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKGDKIRIVPL 202
              K  +    ++ +LL   GLRI E  +    +       +   LR+ GKG+K R V +
Sbjct: 137 -TLKKTNFFMYSLFFLLTTTGLRIEEVANAKWADLAFHPSLNVYLLRVVGKGNKTREVRI 195

Query: 203 LPSVRKAILEYYDLCPF--DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-- 258
              V   +     L     +L+ +          G         +Y+ +      LP   
Sbjct: 196 FEDVLNDLCRLRQLRKQTSELDASSSSAFLPKADGSHYRADYLSKYVAEKIEETNLPFLR 255

Query: 259 ----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                 T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y  
Sbjct: 256 YRKDRITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLR 301


>gi|317487260|ref|ZP_07946055.1| phage integrase [Bilophila wadsworthia 3_1_6]
 gi|316921450|gb|EFV42741.1| phage integrase [Bilophila wadsworthia 3_1_6]
          Length = 347

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 102/253 (40%), Gaps = 23/253 (9%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            I +++  +I  +++   T+   + ++ R L+ +    +   +R        + +R  K+
Sbjct: 111 PIGKITLDDIDDYVNTLLTKGNSNGTINRKLAILSRIFRTAVERGKLEVVPKIPLR--KE 168

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           ++   R L +++    V   + +  +        ++ +  +L   G R+ E   +  ++I
Sbjct: 169 AHHRVRFLTQEEENAFVKAFIQNGYNT-------HAEVFLILLYTGFRLGECWRIECRDI 221

Query: 182 MDDQSTLR-IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
             +  T+   + K    R +P++  +R  +         +        LF        + 
Sbjct: 222 NLELGTITAWKTKNGHPRTIPIVDKIRPILERKIFEAGENGK------LFPTA-----DN 270

Query: 241 GVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             F+    +++R LGL        H LRH+ A+ L   G  +  I+  +GH  + TT  Y
Sbjct: 271 RWFESAWNRIKRLLGLEKDVQLVPHALRHTCASRLAQRGVSMMVIKEWMGHSNIKTTMRY 330

Query: 299 TNVNSKNGGDWMM 311
           T+++ K+  +   
Sbjct: 331 THLSPKDLQEAAK 343


>gi|159039223|ref|YP_001538476.1| integrase family protein [Salinispora arenicola CNS-205]
 gi|157918058|gb|ABV99485.1| integrase family protein [Salinispora arenicola CNS-205]
          Length = 296

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/272 (18%), Positives = 100/272 (36%), Gaps = 17/272 (6%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R  S  T+ SY    RQ   F         + + + +++  ++  F+   +       ++
Sbjct: 18  RRTSPETVDSYVTTLRQLAGFC--------SGRDLAEVTRVDVEEFLIDAQEIGNSSATV 69

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTLVDNVLLHTSH 147
            +    +++F ++ +  +I   + +  +      S  +P    +  AL      LL    
Sbjct: 70  HKKFRNLRAFYRWCEVEEIVDSNPMARIAEPAVTSKPIPIVPADHMAL------LLKACG 123

Query: 148 ETKWIDARNSAILYLLYGCG-LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
              + + R++A++ L    G  R+SE + +T   +      + + GKGDKIR VP     
Sbjct: 124 GKGFTERRDTAMIRLWCEAGSPRVSEMVGITLDALDMRHDLVTLHGKGDKIRSVPFGAKT 183

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            +AI  Y  +     +      L+   RG  L      + + +      +P     H LR
Sbjct: 184 GQAIDRYLRVRSKHRDAGRLEALWLAERGGALTSSGAYQMLERRCEEAKIPK-INPHKLR 242

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           H  A      GG      ++ G       + Y
Sbjct: 243 HLAAHLWADAGGSEGDAMALFGWSSAEMPRRY 274


>gi|300871067|ref|YP_003785939.1| bacteriophage-associated integrase XerDC family protein
           [Brachyspira pilosicoli 95/1000]
 gi|300688767|gb|ADK31438.1| bacteriophage-associated: putative integrase XerDC family protein
           [Brachyspira pilosicoli 95/1000]
          Length = 392

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 76/328 (23%), Positives = 138/328 (42%), Gaps = 31/328 (9%)

Query: 22  LQNLEIER-GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT--------IRQLSYTEIR 72
           ++ LE  +   SK T+Q Y    ++F  FL FY + + +  T          ++    I 
Sbjct: 24  IEYLEYSKLYKSKATIQIYSSCIKRFYDFLFFYYDNRQSENTQSYYTTVLYNKVDRKCIE 83

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            +I+ +  +K+    +   +  +K++ KYL K K  +     ++ +       P+ + +K
Sbjct: 84  DYIAYQVNKKVSADFIHCMIMAVKNYFKYLLKLKKISTETFFDIFD---DLKTPKIIVKK 140

Query: 133 QALTLVDNVLLHTSHETK--------WIDARNSAILYLLYGCGLRISEA-LSLTPQNIMD 183
           Q L   D  L  T    +        +++ RN  +L L+   G+R  E          M+
Sbjct: 141 QLLIKADKTLSITKAIAEKSKSPNLFFLEKRNIFMLLLMSNTGIRRKELACIDITNINMN 200

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPG 241
           + +    + KGDK RI+    S++  ++EY  L    L    +    LF     +PLN  
Sbjct: 201 NNTITIYKTKGDKPRIISFSDSIKSKLIEYLKLREERLTRKNKKHNMLFIKKNSEPLNIN 260

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTN 300
                +  + +   +    T H+LR  FAT +  +G D+  I  +LGH  ++TT   Y  
Sbjct: 261 TISTIMNIISKKTNI--KVTCHSLRRGFATDMAESGTDIYVISKMLGHQNINTTVSRYIY 318

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           V +    + M     Q HP    ++K+N
Sbjct: 319 VMASMIKEAM-----QNHPFAKNREKQN 341


>gi|296453592|ref|YP_003660735.1| phage integrase family protein [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296453893|ref|YP_003661036.1| phage integrase family protein [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183023|gb|ADG99904.1| phage integrase family protein [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183324|gb|ADH00206.1| phage integrase family protein [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 351

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 63/332 (18%), Positives = 119/332 (35%), Gaps = 26/332 (7%)

Query: 12  FELLKERQNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
            +  +  ++WL + L   RG S  T+++Y      ++ +L      + +           
Sbjct: 14  PDFWRVARDWLHHWLPKVRGSSPKTVEAYRIGLESYVRWLETTEGTQRSHIGFGHFDRAR 73

Query: 71  IRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTE---SNILNMRNLKKSNSLP 126
           +  ++   RT+    DR++   ++ ++ FL +            ++   +R    +    
Sbjct: 74  LGRWVEWMRTERGYSDRTIMPRMTTMRVFLDHAGLEHPALTALGNDAAGIRVKPPAREPV 133

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ- 185
             L E+    L+       +   +     N  +  L+Y    RI E  +LT  ++  D+ 
Sbjct: 134 DHLGEEHTKALLTAWGTGDAKSRR-----NRMLPILMYDTAARIGELAALTIADVGMDKP 188

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRG---KPLNPG 241
           + + + GK  K R+VPL    R  +  Y +   P     +   PLF   R    +PL+  
Sbjct: 189 ARVTLTGKRGKSRVVPLGERTRTHLAAYLEEFHPGPSTRDGDRPLFHSTRNGAIQPLSVD 248

Query: 242 VFQRYIRQLRRYL------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                 +             +P     H +R + A  L   G  L  I  +LGH  +STT
Sbjct: 249 RIDEIPKTAAARARRGTCPSMPERVHCHLIRRTRAMDLYQQGVPLPLIMQLLGHESMSTT 308

Query: 296 QI-YTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
              Y         D M +  D  +P      +
Sbjct: 309 SASYAFAT----LDMMRKAVDAANPGPDPSKE 336


>gi|282878602|ref|ZP_06287378.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281299273|gb|EFA91666.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 418

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 70/319 (21%), Positives = 132/319 (41%), Gaps = 31/319 (9%)

Query: 14  LLKERQNWL----QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLS 67
           LL+  + +L    + + I+R L    L++Y+      L  L  Y ++K  +  I   QL 
Sbjct: 122 LLQSFEEYLRQTKERIGIDRALKTFKLRTYQ------LSLLREYLQKKYKVSDIPLSQLD 175

Query: 68  YTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
              I  F       +K+   S+  +LS +KS ++   K+ +      L   + ++    P
Sbjct: 176 KAFIEGFEYYLSIDRKLKRSSVSSALSTLKSIVRMAVKKGVLDFYPFLGY-SYERPKGEP 234

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R++++ Q   ++D   L    E   I      +       GL IS+  +L  +NI+ ++ 
Sbjct: 235 RSISQDQLQRIID---LEIEWENYRIV---RDLFVFSCFSGLAISDVRNLREENIVLEEG 288

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            L I+GK  K +    +  +  A                 +P             +    
Sbjct: 289 ELCIKGKRMKTKTPYRVQVLPPAWAIMERYRGKRAGFVFDVP----------TNDIIHNG 338

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +  ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQ+Y  V+S+ 
Sbjct: 339 MHYIQRSIGMKSPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSER 398

Query: 306 GGDWMMEIYDQTHPSITQK 324
               M ++  +   + T K
Sbjct: 399 IHREMQKVQQRIQDTFTLK 417


>gi|284929494|ref|YP_003422016.1| site-specific recombinase XerD [cyanobacterium UCYN-A]
 gi|284809938|gb|ADB95635.1| site-specific recombinase XerD [cyanobacterium UCYN-A]
          Length = 316

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 62/302 (20%), Positives = 120/302 (39%), Gaps = 23/302 (7%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY----TEIRAFISK 77
           L  L +    S +T   YE D   F   ++  T  +  I+    +        + A+   
Sbjct: 17  LITLWLLDKSSPMTRYEYEKDLCYFFESMSQKTVTEELIKEFLSIKPFQANAALIAYKGY 76

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA--LNEKQAL 135
            R +++   ++ R +S IKSF+    +  +   S + ++   ++S        +  ++  
Sbjct: 77  LRKKQLAPSTINRKISVIKSFVCAAHRLGLCQYS-LKDVVGSERSKPFRDTSGITLEEFK 135

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            ++    L T   T+     + A+L LL+   LR +E  +L   +I    S L I+GKG 
Sbjct: 136 KVLMVCDLKTIKGTR-----DKALLMLLWSNALRRNEISALDIDDIDYSNSKLWIKGKGY 190

Query: 196 KIRI-VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG----KPLNPGVFQRYIRQL 250
             +  + L     +AI  +      ++      PLF  +        L+     + +R+ 
Sbjct: 191 NEKHAIDLSVKCVEAIKYWLVYRGNEVKK--YTPLFTSLDSKSIGNRLSGDGIYKIVRRY 248

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLS-NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
               G+    + H +RHS  T  L  + G++R +Q +  H  L+T  IY   +     D 
Sbjct: 249 CEKAGIEKRISPHRIRHSSITTALDKSNGNVRKVQKLSRHKNLNTLMIY---DDNRNQDQ 305

Query: 310 MM 311
           + 
Sbjct: 306 LK 307


>gi|332652921|ref|ZP_08418666.1| phage integrase [Ruminococcaceae bacterium D16]
 gi|332518067|gb|EGJ47670.1| phage integrase [Ruminococcaceae bacterium D16]
          Length = 540

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 61/313 (19%), Positives = 111/313 (35%), Gaps = 54/313 (17%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS-- 87
           GL   T  +YE    Q       +   ++    + QL+  +++ F +  + +    R+  
Sbjct: 87  GLRPATQNTYESTIYQ-------HIIPQLGKIPLCQLTQKDLQQFYAHLKKEGRLVRTEQ 139

Query: 88  --------LKRSLSG-IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   + R      ++ L    +  +   +  +  +   K +   + L+ ++    +
Sbjct: 140 YGKGLSDRMARMCHAKCRAALDQAVQENLIRSNPAVGCKLPPKRSREMQVLSRQELQRFL 199

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG------ 192
                    E          +  L    GLR  E L+L   ++  D  TL +        
Sbjct: 200 IQAKADGYFE----------LFLLDLSTGLRRGELLALQWSDLDLDTGTLSVTKQVYEVN 249

Query: 193 ---------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG--KPLNPG 241
                        IR + L P+V +   EY               LF   +    PL PG
Sbjct: 250 GKMQLSVPKTKASIRKLVLPPAVVEVFREYR-------KTAKSRWLFPSPKNLDMPLTPG 302

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTN 300
              R +  +    G       H LRH+FAT  L NG D++++ ++LGH   +TT  IYT+
Sbjct: 303 SMLRRLHIILERAGC-KQIRFHDLRHTFATMALENGMDIKTLSAMLGHVSAATTLDIYTH 361

Query: 301 VNSKNGGDWMMEI 313
           + S    +   +I
Sbjct: 362 ITSDMLSEAAAKI 374


>gi|268319484|ref|YP_003293140.1| site-specific tyrosine recombinase XerS [Lactobacillus johnsonii
           FI9785]
 gi|262397859|emb|CAX66873.1| site-specific tyrosine recombinase XerS [Lactobacillus johnsonii
           FI9785]
          Length = 356

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/352 (18%), Positives = 135/352 (38%), Gaps = 42/352 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT------ 54
           ME N   E++  EL     ++++   +    S  T   Y  + R+F  +L          
Sbjct: 1   METNKYLELIKQEL-ANMPDFVKEYNLGTSHSLTTTYQYLTEIRRFFDWLRQNNIASISS 59

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKI------GDRSLKRSLSGIKSFLKY------- 101
            ++I + T+  L   ++  +I   +  K          ++ RS++ ++S  K+       
Sbjct: 60  NKEIEVTTLENLQRNDVMLYIHHLKHTKNQQGRLNSPTTINRSINALRSLYKFLTITSDN 119

Query: 102 LKKRKITTESNILNMRNLKKSNSL---PRALN--------EKQALTLVDNVLLHTSHET- 149
                    + +L + +L  + +L      L         + Q L  ++N  +H  ++  
Sbjct: 120 NHGEPYFDRNVMLKINSLNDTKTLNYRAHVLESHMYMGDLKYQFLDFIENEYVHKCNKQS 179

Query: 150 ----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
               K    R+ AI+ L+ G G+R+SE + +  +NI    + L +  KG +   VP+   
Sbjct: 180 LPAFKKNHERDMAIIALILGTGIRVSECVGVNMRNINLKDAMLDVTRKGGQKDSVPIAAW 239

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLSTT 261
               + +Y ++     +   +   F   R       +     ++ + +     G     T
Sbjct: 240 TIPYLKKYREIRADRYHAEKEDTAFFLTRWHGKTKRITTNAVEKMVNKYSAAFG--KPLT 297

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            H LRH+ A+ L     D   +   LG    + T +YT+V+ K     + +I
Sbjct: 298 PHKLRHTLASELYEVTKDQVLVAQQLGQKGTTATDLYTHVDQKKQKAALNKI 349


>gi|299531115|ref|ZP_07044528.1| phage integrase family protein [Comamonas testosteroni S44]
 gi|298721072|gb|EFI62016.1| phage integrase family protein [Comamonas testosteroni S44]
          Length = 313

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 74/314 (23%), Positives = 129/314 (41%), Gaps = 24/314 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI-SKR 78
           ++L +L  + GL++ TLQ  +   R F  +L      + T ++    S  +++ F+ S +
Sbjct: 13  DFLTDLFFQEGLAESTLQVLQIQLRAFNAWLL-----EATGRSWEHASVDDLQVFLLSWK 67

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            T+ +    LK+ +  ++   ++ K+  I      L +               +   +  
Sbjct: 68  DTRSVSALRLKQWM--LQRLYRWAKESGIVD----LGVHRALLPLRGGLRRPRRPPSSNA 121

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              L+           R+ A L LLYG GLR  E L++T   +      ++I GKG K R
Sbjct: 122 IAKLMELPDTKTAKGMRDRAALELLYGSGLRAGELLNITLDQVPASGKPMQIWGKGSKER 181

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQ-----LPLFRGIRGKP-LNPGVFQRYIRQLRR 252
           +V +       I +Y       L            LF      P       +R + +  R
Sbjct: 182 LVVVGEHAMYWIAQYKTARQVILAAGGHGKRSTSKLFVSSGRYPDYRYYQLRRMVSRYGR 241

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL    T H LRH+FA+HL      L +IQ +LGH R  TT  Y ++  ++    +  
Sbjct: 242 ECGL--RLTPHALRHAFASHLYQGKATLHTIQLLLGHERQETTAHYVSILHED----IRA 295

Query: 313 IYDQTHPSITQKDK 326
           + DQ HP  ++ ++
Sbjct: 296 MADQHHPRSSKYER 309


>gi|284990383|ref|YP_003408937.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284063628|gb|ADB74566.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 347

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 62/277 (22%), Positives = 106/277 (38%), Gaps = 16/277 (5%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           +L  ER  S  T++SY    R+FL +        +       L    + AF ++      
Sbjct: 15  HLRAER-KSPETVKSYGDGVRRFLAWADGEGRPAV-------LDRASVNAFTAELLEGGA 66

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
              + +     ++ F  +L +        +L +R  K    +   L  +Q   LV     
Sbjct: 67  EPATARARQLALRRFSAWLVEEGEADADPLLGLRAPKLDAKVVEPLTAEQIKALV----- 121

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPL 202
                 +  D RN A++ L+   G R  E ++L  +++     T    +GKG + R+VP 
Sbjct: 122 AACAGRELRDRRNEALVRLMIETGARAGEVVALGTEDVDLSNGTATVRRGKGGRGRVVPF 181

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            P   +A+  Y         L   L L+ G RGK  +     + + +  R  G+      
Sbjct: 182 GPQTSRALDRYLRAR-RSHRLAGTLALWLGDRGKAFSYDALHKTLGERARAAGIE-GFRP 239

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           H LRH+ A   L+ GG    + ++ G  R      YT
Sbjct: 240 HRLRHTAAHRWLAAGGIEGGLMAVAGWTRPDMLLRYT 276


>gi|298388233|ref|ZP_06997754.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14]
 gi|298259008|gb|EFI01911.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14]
          Length = 170

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 7/147 (4%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDL 216
            +  +LY  GLRISE L L P +I + +S +R++ GKG K R   L   + K + EY  L
Sbjct: 10  CMFSILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSRPLMKKLTEYNRL 69

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
                    ++ LF    G+P    +  + ++   R  G+      H LRHSFATHLL  
Sbjct: 70  Y------KPKVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQ 123

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNS 303
           G D++ ++ ++GH  + TT+ Y ++  
Sbjct: 124 GTDIKIVKELMGHNNIKTTERYVHIAD 150


>gi|229107361|ref|ZP_04237229.1| Tyrosine recombinase [Bacillus cereus Rock3-28]
 gi|228676090|gb|EEL31067.1| Tyrosine recombinase [Bacillus cereus Rock3-28]
          Length = 358

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/330 (20%), Positives = 125/330 (37%), Gaps = 37/330 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEI 71
            + +++  E+    S  TL +Y  D R F  +L           + I+   +  L   ++
Sbjct: 27  IEEFVEYKELHD-ASPSTLLNYVYDFRVFFNWLLSEQIIELKPIKDISFSDLENLKKKDV 85

Query: 72  RAFISKRR-TQKIGDRSLKRSLSGIKSFLKY------------------LKKRKITTESN 112
             F+   +  Q + + S+ R +S +KS  KY                  + K +I  +  
Sbjct: 86  ENFMRFLKLQQNMQNSSVNRKISALKSLFKYLTSLSENEDGECYFYRNVMAKIEIHKDKE 145

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-----RNSAILYLLYGCG 167
            LN R  +  + +    ++++ L  V      +  + +         R+ AIL L  G G
Sbjct: 146 TLNARAKRMRSKIFHNDDDQEFLDYVKYEHEKSLTKHQLFYFLRDKNRDVAILSLFLGSG 205

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           +R+SE  +L  ++I   +  + +  KG+K   V + P     + +Y ++         +L
Sbjct: 206 VRVSELAALRMEDINIKERLIDVIRKGNKEDSVWITPIALNDLEKYMEIRDNKYVPGKEL 265

Query: 228 P-LFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             +F         PL+    Q  + +  +  G     + H LRH+ A  L     D   +
Sbjct: 266 KNVFLSKYKHTAQPLSVRAIQDIVEKYTKAYG--KRMSPHKLRHTLANKLYMEEKDSLQV 323

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              LGH    T  +YT +      D +  I
Sbjct: 324 MQQLGHTSQDTALLYTQLGETTIKDSLGRI 353


>gi|330507934|ref|YP_004384362.1| site-specific integrase/recombinase [Methanosaeta concilii GP-6]
 gi|328928742|gb|AEB68544.1| site-specific integrase/recombinase [Methanosaeta concilii GP-6]
          Length = 279

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 122/284 (42%), Gaps = 31/284 (10%)

Query: 42  DTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA------FISKRRTQKIGDRSLKRSLSGI 95
           D  +F  +L  +     TI +        I+A      F+     +K+   ++   ++ I
Sbjct: 16  DLDKFRRYLRDHGHRPSTIDSYLMCISKYIQANKSVPDFLDGLHNRKLAGSTIDNYITSI 75

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
           K + + L +         +++  LK+S  +P   NE     +   +           + +
Sbjct: 76  KKYHEMLGQE--------ISIPYLKRSEGIPHYFNEDDVRRIFCVI----------HNIK 117

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY 214
           + A+L +L+   LR SE  ++  ++I     TLRI+ GKG +   VPL       + EY 
Sbjct: 118 HLAMLNVLFYGCLRASELTAIDDEDIDLGLMTLRIRDGKGGRSGTVPLSNECIAVLKEYL 177

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL-RHSFATHL 273
            + P  ++++ + PLF   RG+  +     R     +    +  +   H   RH+ AT +
Sbjct: 178 QVRP-AIDIDGRKPLFYTDRGRRWDRKDLYRMFIIYKHKSNVQKAGGLHVFSRHTPATLM 236

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           ++NG D+R ++ +L H  + TT  Y +V  K     + E Y+Q 
Sbjct: 237 IANGCDIRIVKELLRHRDIRTTLRYAHVADKT----LRERYNQC 276


>gi|323484510|ref|ZP_08089875.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
 gi|323402088|gb|EGA94421.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
          Length = 280

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/296 (18%), Positives = 119/296 (40%), Gaps = 43/296 (14%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +++ E+      +L+  + E+  SK T++ Y  D R+F+ ++              +++ 
Sbjct: 5   VITAEMEILFGEYLE--QDEK--SKNTIEKYRRDLRKFVEYIDG-----------EEVTK 49

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--P 126
             +  F      +     S+   ++ +  F+++   ++         ++ LKK   +  P
Sbjct: 50  ELVIGFKEYL-VEHYAVNSVNSIIASLNRFMQFAGWQEF-------RVKQLKKQRQVYCP 101

Query: 127 --RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
             + L +++   L+         +          I+  +   G+RISE  S+T Q + + 
Sbjct: 102 EEKELTKQEYFELIRTAKREGKEKIG-------LIIQTIGSTGIRISELPSITVQAVKNG 154

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
            + +  +GK    R V L   +   ++ Y              P+F   +G PL+     
Sbjct: 155 VAQVDCKGKN---RQVLLPRKLLVKLMHYIRKEHIQ-----CGPIFITKQGNPLDRSNIW 206

Query: 245 RYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           + ++++ R  G+       H LRH FA        D+  +  +LGH  ++TT+IY 
Sbjct: 207 KEMKKICRLAGVNEKKVFPHNLRHLFAYSFYQMEKDIAKLADLLGHSNINTTRIYI 262


>gi|191168019|ref|ZP_03029820.1| integrase [Escherichia coli B7A]
 gi|190901957|gb|EDV61705.1| integrase [Escherichia coli B7A]
          Length = 337

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 81/315 (25%), Positives = 128/315 (40%), Gaps = 44/315 (13%)

Query: 8   EIVSFE----LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT- 62
           E V+FE         + WL     +R LS+LT   +  D +            KI I T 
Sbjct: 34  EAVAFEKYTLYNHHNKEWLSKPTDKRRLSELTQIWW--DLKGKHEEHGKSNLGKIEIFTK 91

Query: 63  ------IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILN 115
                   Q++ + I  + + RR+Q I   S+ R L+ I   F   ++      E  I  
Sbjct: 92  ITNDPCAFQITKSLISQYCATRRSQGIKPSSINRDLTCISGMFTALIEAELFFGEHPIRG 151

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
            + LK+       L +++   L+             +D  N  I  L    G R  EA  
Sbjct: 152 TKRLKEEKPDTGYLTQEEIALLL-----------AALDGDNKKIAILCLSTGARWGEAAR 200

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           L  +NI+ ++ T  ++ K +K R VP+  +V K I +           N +  LF     
Sbjct: 201 LKAENIIHNRVTF-VKTKTNKPRTVPISEAVAKMIAD-----------NKRGFLFPDADY 248

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  F+R ++       LP+    H LRHSFATH + NGG + ++Q ILGH R+  T
Sbjct: 249 PR-----FRRTMK--AIKPDLPMGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQT 301

Query: 296 QIYTNVNSKNGGDWM 310
            +Y +   +   D +
Sbjct: 302 MVYAHFAPEYLQDAI 316


>gi|20804051|emb|CAD31628.1| PUTATIVE INTEGRASE/RECOMBINASE PROTEIN [Mesorhizobium loti R7A]
          Length = 413

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 62/304 (20%), Positives = 118/304 (38%), Gaps = 15/304 (4%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           I   E  +    +   L  ERGL+  T++S++  +R+FL  +               L+ 
Sbjct: 111 IERTEYEQIVDVFAAYLTNERGLAASTVESHKLLSRRFLQEVC-----PAGADGFAALTP 165

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLP 126
             +  ++ +         S K     +++FL+YL  +   + +    + ++++     LP
Sbjct: 166 EIVIGYVERHALDG-SADSGKAMCGVVRAFLRYLHLKGFISVALADCVPSIRRWRLAGLP 224

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             L  ++   ++D   L     T  +  R+ A+L  L   GLR  E  +L+  +I     
Sbjct: 225 TFLPPQKVQVVLDACDL-----TTAMGLRDYAVLMALAKLGLRAGEVAALSLDDIDWQLG 279

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           ++ I GKG +  ++PL   V  AI+ Y                         +       
Sbjct: 280 SVLIHGKGRRQAMMPLRHDVGAAIVAYIRHGRPASPCRRLFLRMLAPHVGFASGCAITMI 339

Query: 247 IRQLRRYLGLP--LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            ++     G+       AH  RHS AT LL +G     I  +L H  + +T+IY  ++ +
Sbjct: 340 AKEALERAGIHGYAHHGAHLFRHSLATDLLRSGASFAEIGQLLRHRSIDSTRIYAKLDIE 399

Query: 305 NGGD 308
              +
Sbjct: 400 KLRE 403


>gi|256818734|ref|YP_003135801.1| integrase family protein [Cyanothece sp. PCC 8802]
 gi|256592474|gb|ACV03344.1| integrase family protein [Cyanothece sp. PCC 8802]
          Length = 373

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 60/339 (17%), Positives = 122/339 (35%), Gaps = 58/339 (17%)

Query: 11  SFELLKERQNWLQNLEIERGLSKL-TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           + + L    ++L   ++  G +   TL++Y C  +QFL +        I      + ++ 
Sbjct: 33  ATQFLSFFDDFLAT-DVGDGAAANDTLRTYRCHLKQFLGWCHTNQVHPI------EATFA 85

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLP 126
           +++ +      Q     ++   LS ++ F   L +      +  + ++     K   +  
Sbjct: 86  QLKQYRHWLIEQ-YQQATISLKLSVLRRFYDALLENGYILSNPAMGLKPPREVKDPAAKI 144

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-- 184
             L  ++   L+D        +      R+  ++ ++   G R  E   +   +I+ D  
Sbjct: 145 NYLQVEEMHRLLD----ALPDDNSVHSLRDRLLISVMVLEGCRTVELHRVNVGDIVKDGP 200

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKPLNP--- 240
              LR+  K   IR+VPL P + + + +Y          L    P+F  I          
Sbjct: 201 NVGLRVWAKRS-IRVVPLTPDLAQLLRQYLAARRKQGETLTPDTPVFVSIARTTYGQRLS 259

Query: 241 -----GVFQRYIRQL------------------------------RRYLGLPLSTTAHTL 265
                 +  +Y+  +                               R+   P   +AH+L
Sbjct: 260 RRSIRRIVDKYLTAISLKTVPPKPRTEKRLKSSESVAPSQGRGKKSRHQSSPRKLSAHSL 319

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           RH+  T  L  G  LR +Q +LGH    TT +Y +++ +
Sbjct: 320 RHTAGTLALRAGASLRQVQDLLGHSDPRTTVLYAHISDR 358


>gi|323936701|gb|EGB32986.1| phage integrase [Escherichia coli E1520]
          Length = 337

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 81/315 (25%), Positives = 128/315 (40%), Gaps = 44/315 (13%)

Query: 8   EIVSFE----LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT- 62
           E V+FE         + WL     +R LS+LT   +  D +            KI I T 
Sbjct: 34  EAVAFEKYTLYNHHNKEWLSKPTDKRRLSELTQIWW--DLKGKHEEHGRSNLGKIEIFTK 91

Query: 63  ------IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILN 115
                   Q++ + I  + + RR+Q I   S+ R L+ I   F   ++      E  I  
Sbjct: 92  ITNDPCAFQITKSLISQYCATRRSQGIKPSSINRDLTCISGMFTALIEAELFFGEHPIRG 151

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
            + LK+       L +++   L+             +D  N  I  L    G R  EA  
Sbjct: 152 TKRLKEEKPDTGYLTQEEIALLL-----------AALDGDNKKIAILCLSTGARWGEAAR 200

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           L  +NI+ ++ T  ++ K +K R VP+  +V K I +           N +  LF     
Sbjct: 201 LKAENIIHNRVTF-VKTKTNKPRTVPISEAVAKMIAD-----------NKRGFLFPDADY 248

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  F+R ++       LP+    H LRHSFATH + NGG + ++Q ILGH R+  T
Sbjct: 249 PR-----FRRTMK--AIKPDLPMGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQT 301

Query: 296 QIYTNVNSKNGGDWM 310
            +Y +   +   D +
Sbjct: 302 MVYAHFAPEYLQDAI 316


>gi|206599577|ref|YP_002242016.1| gp33 [Mycobacterium phage Brujita]
 gi|206282726|gb|ACI06247.1| gp33 [Mycobacterium phage Brujita]
 gi|302858513|gb|ADL71260.1| gp33 [Mycobacterium phage island3]
          Length = 297

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/284 (18%), Positives = 108/284 (38%), Gaps = 35/284 (12%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLK 89
           LS  T++      R+   +     E            + ++   +S          R+  
Sbjct: 14  LSARTVEERVATVRRMAAWCGVEPE------------FAQVEQIVSWLAEGGNWSARTRW 61

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
                + ++  +L+++    ++ ++ +   K+  S+PR ++      L+           
Sbjct: 62  TYYGALSAWFLWLQQQGHRHDNPMVMIGRPKRPKSVPRPVSNLDVQRLL----------A 111

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
                R  A++ L    GLR+ E   +  +++   + T+ + GKG+    +PL   V + 
Sbjct: 112 VRAHKRTKAMILLAAFQGLRVHEIAQIKGEHLDLIERTMTVTGKGNVTATLPLHHRVVEI 171

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
             +      +          F G              I++     G+    +AH LRH F
Sbjct: 172 AYQMPRRGHW----------FPGPDRGHQRRESVSGTIKEAMIRAGVV--GSAHCLRHWF 219

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            T LL  G DLR++Q ++ H  L++T+IYT V  +   + +  +
Sbjct: 220 GTALLEAGVDLRTVQELMRHQSLTSTEIYTRVTDQRRAEGIERL 263


>gi|323694873|ref|ZP_08109025.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
 gi|323501067|gb|EGB16977.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
          Length = 280

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/296 (18%), Positives = 119/296 (40%), Gaps = 43/296 (14%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +++ E+      +L+  + E+  SK T++ Y  D R+F+ ++              +++ 
Sbjct: 5   VITAEMEILFGEYLE--QDEK--SKNTIEKYRRDLRKFVEYIDG-----------EEVTK 49

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--P 126
             +  F      +     S+   ++ +  F+++   ++         ++ LKK   +  P
Sbjct: 50  ELVIGFKEYL-VEHYAVNSVNSIIASLNRFMQFAGWQEF-------RVKQLKKQRQVYCP 101

Query: 127 --RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
             + L +++   L+         +          I+  +   G+RISE  S+T Q + + 
Sbjct: 102 EEKELTKQEYFELIRTAKREGKEKIG-------LIIQTIGSTGIRISELPSITVQAVKNG 154

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
            + +  +GK    R V L   +   ++ Y              P+F   +G PL+     
Sbjct: 155 VAEVDCKGKN---RQVLLPRKLLVKLMYYIRKEHIQ-----CGPIFITKQGNPLDRSNIW 206

Query: 245 RYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           + ++++ R  G+       H LRH FA        D+  +  +LGH  ++TT+IY 
Sbjct: 207 KEMKKICRLAGVNEKKVFPHNLRHLFAYSFYQMEKDIAKLADLLGHSNINTTRIYI 262


>gi|315637161|ref|ZP_07892383.1| phage integrase family site-specific recombinase [Arcobacter
           butzleri JV22]
 gi|315478528|gb|EFU69239.1| phage integrase family site-specific recombinase [Arcobacter
           butzleri JV22]
          Length = 350

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 64/285 (22%), Positives = 121/285 (42%), Gaps = 24/285 (8%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y     +   FL       + + +++++    +  F++   T  + D S K     +
Sbjct: 73  VNTYFNPLFKLYNFLI-----NLGLASMKEIDEELLSDFLAS-ETSSLSDASKKNHRIAL 126

Query: 96  KSFLKYLKKRKITTESNILNMR---------NLKKSNSLPRALNEKQALTLVDNVLLHTS 146
            SF  Y+ K+    + +    +         + K    LP  +N+ +    +    +   
Sbjct: 127 LSFFSYIDKQNQNEDGSSYLFKIELKNWGGLSGKSGTKLPSFMNKDEIDRFLKA--IDDF 184

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLP 204
             T     RN  I+ ++   G+R+SE L+L  ++I  + +   L+I+GKG+K R+V +  
Sbjct: 185 EFTDNTGFRNRLIIKIIIYTGIRVSEILNLRIKDIFKEDNVYMLQIKGKGNKPRVVMIKS 244

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AH 263
           S    I+E       D+ +     L    +G+ L      R +  +    G+      AH
Sbjct: 245 S----IIEKELQNWLDMRVCNSDLLVCNQKGERLTQAYISRVVENILISAGIRKEKNGAH 300

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            LRHSFAT L     DL  +Q  LGH  ++T++IYT+ + +    
Sbjct: 301 MLRHSFATLLYQKHHDLILVQEALGHADINTSRIYTHFDKERLKK 345


>gi|149919060|ref|ZP_01907545.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
 gi|149820213|gb|EDM79632.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
          Length = 361

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/303 (17%), Positives = 115/303 (37%), Gaps = 33/303 (10%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T+ +     R     L  +         + Q+   +I  +    + + +  +++   L+ 
Sbjct: 79  TVNNKPSSVRSKRSMLEHHLTPFFGKMRLSQIGPRQIERY-KALKAKTLSAKTINNHLTT 137

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           ++  L    +          +++ ++      R L+ ++A  L++        E  W   
Sbjct: 138 VRKMLVVASEWGYLEAVP--SVKWMRAPKPEFRFLDFEEADRLLE----GAKEEPMW--- 188

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----------KGDKIRIVPLLP 204
               ++ +    GLR  E L L   ++      L I+           K  + R +PL  
Sbjct: 189 --WTMILVAMRTGLRQGELLGLRWCDVDLKSGRLVIRQAVAEGIVGTPKNHRQRELPLAE 246

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           SV +A+  +               +F    G  L   + +  + + +R  G+      H 
Sbjct: 247 SVHQALEAWRHRLGPL--------VFCQPDGTMLTKNMCKWPLIRAKRKAGIEA-LGWHD 297

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LRH+FA+HL+  G  LR++Q +LGH  +  T  Y +++ K     +  + D+   +  ++
Sbjct: 298 LRHTFASHLVMRGVPLRAVQELLGHSTIEMTMRYAHLSPKVLHSAVQSLDDEV--AAQER 355

Query: 325 DKK 327
            KK
Sbjct: 356 HKK 358


>gi|55980996|ref|YP_144293.1| DNA integration/recombination/invertion protein [Thermus
           thermophilus HB8]
 gi|55772409|dbj|BAD70850.1| DNA integration/recombination/invertion protein [Thermus
           thermophilus HB8]
          Length = 391

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/319 (21%), Positives = 131/319 (41%), Gaps = 27/319 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKR 78
           ++L+ LE E GL   +++  + +    L  L      + +    ++++    +RA + + 
Sbjct: 77  DYLKRLERE-GLRPNSIRLAQEELAHALPSLKDPKAHDPLGRMRLQEVKPVHVRAAVDRV 135

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTL 137
                  R++ R L  +K+  +   + ++   +    +R  L K     RAL  ++   L
Sbjct: 136 AEAGYAPRTVGRVLMRLKALFREALRLELVARNPAEAVRLRLPKGEKTARALEPQEVARL 195

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++      S +        + +L L+   GLR  EAL+L  ++I  +   L +     K 
Sbjct: 196 LETAEASRSKDM-------ALLLRLMLETGLRRGEALALQWRDIDLEAGELTVWRSWTKA 248

Query: 198 R-----IVPLLPSVRKAILEYYDLCPFDLNLNIQL----------PLFRGIRGKPLNPGV 242
           R       P  P+ ++ +     L         +L           LF     KP++P  
Sbjct: 249 RGKGAFSEPKTPTAKRKVPLPRGLLLRLKARREELLERLTPEEVDGLFLVGGVKPVDPDA 308

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           F  Y+R+L    GL      H LRH++AT  LS G  L  +   LGH   + T  +Y ++
Sbjct: 309 FNHYLRRLAERAGLGR-VRVHDLRHTWATLALSRGVPLEVVSERLGHASPTITLNVYRHL 367

Query: 302 NSKNGGDWMMEIYDQTHPS 320
             +    W++++ +  +P+
Sbjct: 368 LEEERRGWVLDLEELLYPA 386


>gi|293368859|ref|ZP_06615463.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292636164|gb|EFF54652.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 397

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/307 (19%), Positives = 118/307 (38%), Gaps = 39/307 (12%)

Query: 20  NWLQNLEI---ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           ++L N+     ERG S      YE      +  L  +  + I  + I +   +    F+ 
Sbjct: 106 DYLVNMRNQSKERG-SLN----YEKTIGNTIRELKLFRGDYIAFRDIDKDFLSNFVDFLK 160

Query: 77  KRRTQK----------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM---RNLKKSN 123
           + +             + + S+      +++ L    K  I T +          +K   
Sbjct: 161 QAKKASKYGLAKAGGVLSNNSVVAYYGVLRTALNKAFKEGIITINPTKEFNFADKVKAEA 220

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           S    L  ++   L+       + E K+   + + +   L  CGLR+S+   L   ++  
Sbjct: 221 SRREYLTIEELKLLI-------ATECKYEIMKQAFLFSCL--CGLRVSDIRKLKWSDLQK 271

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
               +RI+ K  K +    LP   +A+ ++        + +   PL         + G  
Sbjct: 272 SGERIRIEIKMQKTKEPLYLPISDEAL-KWLPQRGEAKDDDFIFPL--------THEGTI 322

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              +++  +  G+    + H  RH+ AT +L+ G DL ++  +LGH  ++TTQIY  +  
Sbjct: 323 NNILQKWAKAAGVTKHISFHVARHTHATMMLTLGADLYTVSKLLGHKNIATTQIYAKIVD 382

Query: 304 KNGGDWM 310
           K   + +
Sbjct: 383 KKKEEAI 389


>gi|206602932|gb|EDZ39412.1| Integrase [Leptospirillum sp. Group II '5-way CG']
          Length = 367

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 88/263 (33%), Gaps = 16/263 (6%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKIT 108
            A +    +  + I  +   E+       R    +   ++ R  + +K       +  + 
Sbjct: 89  YAKFWTNTLGGRPIASIKTAELERIQVSLREAGKLAPSTINRHFAFLKHTFNIALRDGLI 148

Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
            E+ +  +   K+       L+E       +  L  +     W        + L    GL
Sbjct: 149 KENPVKGVHFFKEPKGRTVFLSEAD-----EAKLKESFSPEYWPY------VELAIHTGL 197

Query: 169 RISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           R SE  +L  +NI      L +   K    R VPL  +    + +               
Sbjct: 198 RQSEQFNLRWENIDMTSRVLTVPVSKSGLTRHVPLNDTALAVLRDLKARQVILSPW--VF 255

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           P              +++         GL      HTLRH+F + L+  G  L ++Q + 
Sbjct: 256 PSPVDHTKPRDGNAFYKKVFVPAIEKAGLS-GVVWHTLRHTFCSRLVQAGVPLTTVQKLA 314

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH   STT IY +++  +  + +
Sbjct: 315 GHKDYSTTLIYAHLSPDHLHEAV 337


>gi|82754993|gb|ABB90250.1| integrase [Pseudomonas aeruginosa]
          Length = 280

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/299 (19%), Positives = 111/299 (37%), Gaps = 64/299 (21%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVNWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLR
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLR 280


>gi|157149591|ref|YP_001456672.1| phage integrase family site specific recombinase [Campylobacter
           concisus 13826]
 gi|112800190|gb|EAT97534.1| site-specific recombinase, phage integrase family [Campylobacter
           concisus 13826]
          Length = 329

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 69/335 (20%), Positives = 129/335 (38%), Gaps = 29/335 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+ N   +    E+   R +++   +I    S  T+ +Y      F+ F  +   + I+ 
Sbjct: 1   MKNNEKLDFAD-EMANYRDSFISYNKIAD-KSINTINTYRNCLDGFVEFC-YENNDVISF 57

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKR-----------SLSGIKSFLKYLKKR---- 105
             + Q   T+   ++     +K   +S  R            L+ +K F KY+       
Sbjct: 58  NNLSQKHITDYFIWLDDLYRKKQHKKSATRAKSISSSTKISYLTILKIFFKYITNNNDKL 117

Query: 106 ---KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
              +   ++  +  + + K  +  +     + L  V+N L+         + R+S ++ L
Sbjct: 118 IDLEKILDNYKIAKKKVNKFENFMKESERDKILDYVENRLVKKPEYRYNKNYRDSLLIKL 177

Query: 163 LYGCGLRISEALSLTPQNI----MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +   GLRISEAL+L   +       +   + I  KG + +   +  S  KA  E      
Sbjct: 178 MLKSGLRISEALNLKFCDFQESDDGEFYDINILAKGGEYQTAYIAKSYIKADFE----RL 233

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
             +NL        G   KP++       + ++ R  G+      H LRHSFA +++    
Sbjct: 234 LSINLPENYIFTSGCSDKPISRQNVYSLLARIYRKCGIVNKRGCHILRHSFAMNMVEKNT 293

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +L  IQ  L H ++ TT IY +         M  +
Sbjct: 294 NLGVIQKALRHKKIQTTMIYADATGDMVKKEMKRV 328


>gi|302527392|ref|ZP_07279734.1| tyrosine recombinase XerC [Streptomyces sp. AA4]
 gi|302436287|gb|EFL08103.1| tyrosine recombinase XerC [Streptomyces sp. AA4]
          Length = 387

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/371 (17%), Positives = 114/371 (30%), Gaps = 70/371 (18%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI----------------- 58
             R+ + + L +    S  T  +Y  D    L ++  Y                      
Sbjct: 14  DARERFGEFLRV--YASINTRVAYATDLGIPLDWVPGYQPPDPNRRRGRARRTDPDALAW 71

Query: 59  -------TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLK-YLKKRKITTE 110
                     +   +    +  ++ +       D +  R LS + +F + YL +  +   
Sbjct: 72  LPWCLRNGFTSFADVRVEHVEQWLDELARAGYRDATRGRMLSAVSAFYRKYLLREGLAGH 131

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH-----ETKWIDARNSAILYLLYG 165
           +    +    +  + P  +  + A    D             E      R+ A++ +L G
Sbjct: 132 NPAALVDRRAQHLNRPSGVPSQTARWSFDACRALLLAAWLLVEHSRNGLRDRAMVEILIG 191

Query: 166 CGLRISEALSLTPQNIM----DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC---- 217
            G+R  E + +   +           LR+ GKG K R V L   V  A+  Y        
Sbjct: 192 TGVRAEELVGVDLGDYRRPTAGGFGVLRVHGKGSKDREVALAAPVADALDAYLAGRVTPQ 251

Query: 218 ----PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS-------------- 259
                  +  +   PLF    G  ++       +R+L      P                
Sbjct: 252 VPALRGQVGASRAEPLFVTSTGARVHVSHVTALLRRLCATFCQPPKTARLREVLDTAEAR 311

Query: 260 ------------TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                          H+ RHS+ATH +  G   R +Q  LGH  LSTT+ Y +  +    
Sbjct: 312 FVATHLQPLCDTIHPHSARHSYATHAIERGVPPRQVQRDLGHAALSTTEGYLHDENAVRD 371

Query: 308 DWMMEIYDQTH 318
               E+    H
Sbjct: 372 SAAHELAPALH 382


>gi|228470660|ref|ZP_04055516.1| putative tyrosine type site-specific recombinase [Porphyromonas
           uenonis 60-3]
 gi|299143043|ref|ZP_07036164.1| integrase [Prevotella oris C735]
 gi|228307668|gb|EEK16647.1| putative tyrosine type site-specific recombinase [Porphyromonas
           uenonis 60-3]
 gi|298575494|gb|EFI47379.1| integrase [Prevotella oris C735]
          Length = 427

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/329 (20%), Positives = 122/329 (37%), Gaps = 28/329 (8%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           +   +P +   EL +    + + L+  R LSK T+++++   + F+ FL           
Sbjct: 102 QSRPMPTLT--ELYQSVCEYKEELQG-RTLSKATVRAFKDSYKSFVHFLQVRDRADCMPT 158

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            + +    + R F+   R     + S+   L  +   ++   + +   E     +     
Sbjct: 159 EVDKTLLEDYRLFM--LRDLGNKESSVGNRLRHLHQVIRKALQERYVREDPFELID---- 212

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              +     E+ ALT  D   L      +  D     I  L    GL  S+   L   ++
Sbjct: 213 ---IETPTYERNALTADDLQKLLAYRPHRSTDNHCRLIFLLGCFTGLAFSDLKKLRMDDV 269

Query: 182 M---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
               D +  + +     + R +  L  V + IL        +     + P          
Sbjct: 270 YTFGDGRRYISLCRTKTQNRSIVPLLPVAEKILAIVSHGRREGLFFREFP---------- 319

Query: 239 NPGVFQRYIRQLRRYLGLPLS--TTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTT 295
           +   F R I+++    GLP     T+HT RH+FAT   L NG  + ++  +LGH  +STT
Sbjct: 320 SNSNFNRTIQEICIKAGLPPHTQATSHTARHTFATTICLENGLPIETVSKMLGHRFISTT 379

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           +IY  V        M  +    H  + +K
Sbjct: 380 EIYARVTKSKIAKEMQPLMGSEHTRVLRK 408


>gi|327309842|ref|YP_004336740.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326955177|gb|AEA28873.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
          Length = 337

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 68/279 (24%), Positives = 109/279 (39%), Gaps = 30/279 (10%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT------QKI 83
             S+ T ++Y  D R FL + A +  + +  + +       I A+++          +  
Sbjct: 54  QRSEHTRRAYRSDIRHFLAWCAQHHVDALRARRV------HIDAYVASMAAPSPRTGRPA 107

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
            + ++ R L+ +     Y     +   S +  +   +          +  +  L  + + 
Sbjct: 108 AESTVARRLATLAGLYAYGIAEDLLDRSPLGGVHRPRLGQ-------DSTSTGLARDEVA 160

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVP 201
                     AR  A+L LL   GLRI EALS    ++  ++    LR++ KG      P
Sbjct: 161 RLLAAAAADGARAHALLSLLAHNGLRIDEALSRDVDHLQTERGHQVLRLRRKGGHTATAP 220

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP--LS 259
           L P V  A+  Y       L+     PLF    G+ ++     R IR+L R   LP    
Sbjct: 221 LAPPVVHALQVY-------LDGRETGPLFMTRTGRRMDEPAAWRLIRRLARRAELPQADR 273

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              HTLRH F T  L  G  LR +Q   GH    TT+ Y
Sbjct: 274 INPHTLRHGFVTAALDAGVSLRDVQDSAGHADPRTTRAY 312


>gi|323183907|gb|EFZ69298.1| integrase [Escherichia coli 1357]
          Length = 321

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 81/315 (25%), Positives = 128/315 (40%), Gaps = 44/315 (13%)

Query: 8   EIVSFE----LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT- 62
           E V+FE         + WL     +R LS+LT   +  D +            KI I T 
Sbjct: 22  EAVAFEKYTLYNHHNKEWLSKPTDKRRLSELTQIWW--DLKGKHEEHGKSNLGKIEIFTK 79

Query: 63  ------IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILN 115
                   Q++ + I  + + RR+Q I   S+ R L+ I   F   ++      E  I  
Sbjct: 80  ITNDPCAFQITKSLISQYCATRRSQGIKPSSINRDLTCISGMFTALIEAELFFGEHPIRG 139

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
            + LK+       L +++   L+             +D  N  I  L    G R  EA  
Sbjct: 140 TKRLKEEKPDTGYLTQEEIALLL-----------AALDGDNKKIAILCLSTGARWGEAAR 188

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           L  +NI+ ++ T  ++ K +K R VP+  +V K I +           N +  LF     
Sbjct: 189 LKAENIIHNRVTF-VKTKTNKPRTVPISEAVAKMIAD-----------NKRGFLFPDADY 236

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  F+R ++       LP+    H LRHSFATH + NGG + ++Q ILGH R+  T
Sbjct: 237 PR-----FRRTMK--AIKPDLPMGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQT 289

Query: 296 QIYTNVNSKNGGDWM 310
            +Y +   +   D +
Sbjct: 290 MVYAHFAPEYLQDAI 304


>gi|197336531|ref|YP_002157554.1| phage integrase, putative [Vibrio fischeri MJ11]
 gi|197315234|gb|ACH64682.1| phage integrase, putative [Vibrio fischeri MJ11]
          Length = 323

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 71/302 (23%), Positives = 114/302 (37%), Gaps = 19/302 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            ++  L  E   S+ T++        F   L     + I  + +       I   ++K  
Sbjct: 26  RYIYTLRAE--SSRKTME---YTLNGFAKVLNVSNHKLIPWEKLNDF---HIAMALNKLE 77

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              + D  L   L+ IK    +       +   +  +  ++      R +++ + L   +
Sbjct: 78  KNGLKDTRLNTYLTAIKRSATFANGMGRLSTDVLFRINQIQPRKG--RVVSKARPLKPFE 135

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQGKGDKI 197
              L  ++     D RN+AI  LL GCGLR SE ++L        DDQ  +R  GKG   
Sbjct: 136 MTELFITNSPSLRDIRNNAIFALLVGCGLRCSELMTLQIDALVYKDDQHWVRFFGKGHVE 195

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-----GKPLN-PGVFQRYIRQLR 251
           R VP+  S    + E+  +   +L L       R  R       P+       R ++   
Sbjct: 196 RCVPINDSTLPYLEEWVQIRK-ELKLTSTTLFIRTRRGNTFVDHPIKARSSIYRLVQSRC 254

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             LG     + H LR + AT L   G  +  IQ ILGH    TTQ Y   + K   D + 
Sbjct: 255 LALGAKFMVSPHDLRRTTATILYHAGVRISVIQDILGHADEKTTQRYIQKDEKLLIDAIK 314

Query: 312 EI 313
            +
Sbjct: 315 NV 316


>gi|120406878|ref|YP_956707.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119959696|gb|ABM16701.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 395

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 126/293 (43%), Gaps = 25/293 (8%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL + + WL +   ERGL+++T+  YE   R+FL            +     ++  E+ A
Sbjct: 108 LLADYRGWLID---ERGLAQMTVIRYENLARRFLTLY--------PLDAGVAVTGAEVVA 156

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNE 131
           F+ +  +Q++   S K  ++ ++S L++L  R +T       +  +   +   +P+AL  
Sbjct: 157 FLLQ-ESQRVSVGSAKGRVAELRSLLRFLFVRGLTPRLLTTAVPPVAGWRDTGIPKALPA 215

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
                L+D+        +  +  R+ AIL ++   GLR  E   +   +I      + + 
Sbjct: 216 GHVQQLLDHC-----DRSDPVQVRDYAILMMVARLGLRSIEVARMQLDDIDWRTGRIILH 270

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP--LNPGVFQRYIRQ 249
           GK  +   +PL   V  A+ +Y         L     +F   +     + P +     R+
Sbjct: 271 GKASRKDGMPLPEEVGAALADYLTDIRPRTQLR---AVFVSCKAPRRAIRPDLVSDVTRR 327

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                GLP    AH LRH+ AT +L  G  L  I  +L H  L+TT +Y  V+
Sbjct: 328 ACDRAGLPR-VGAHRLRHTLATEMLQRGVKLADIGQVLRHRDLATTALYAKVD 379


>gi|313146639|ref|ZP_07808832.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313135406|gb|EFR52766.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 320

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/300 (18%), Positives = 112/300 (37%), Gaps = 41/300 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             +++  L      S  T+  Y    +++  +               +++    R FI  
Sbjct: 56  LNDFIVWLTDNNDYSPHTVDLYHTSMKKYFEYA-------------NEVNMDNCRRFIKM 102

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR--ALNEKQAL 135
              +K    +++  ++ I+ F K++KK         L ++  K    L       E +  
Sbjct: 103 LEEEKFAPATIRLRITAIERFSKWMKK--------PLELKRPKMKRKLDTNNVPTEDEYN 154

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L++ +   ++ +           + +L   G R+SE L  T ++I+  + TL+  GKG+
Sbjct: 155 RLLEYLKTKSNKD-------YYFFIRVLGTTGARLSEFLQFTWEDIISGEVTLK--GKGN 205

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R       +++ +  Y   C        +  LF   R  P+      + ++      G
Sbjct: 206 KYRRFFFQKQLQQEVKAYAKEC-------GKTGLFAVGRFGPMTQRGLSQGMKAWGNCCG 258

Query: 256 L-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN-SKNGGDWMMEI 313
           +       H  RH FA   L    D+  +  +LGH  + TT+IY   +  +   D+   +
Sbjct: 259 IDKKKMHPHAFRHFFAKMFLKKNKDVIQLADLLGHGSVDTTRIYLQKSYDEQKRDFNKNV 318


>gi|269137402|ref|YP_003294102.1| putative integrase [Edwardsiella tarda EIB202]
 gi|267983062|gb|ACY82891.1| putative integrase [Edwardsiella tarda EIB202]
          Length = 306

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 64/266 (24%), Positives = 107/266 (40%), Gaps = 11/266 (4%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQ--TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97
               R  L   A       T        L Y  +    +    Q     ++   L+ +K 
Sbjct: 28  RRSMRSLLNLSATILRHNATADSHDWSALRYVHVATLRATLAEQGYAVATINMVLAALKG 87

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNS----LPRALNEKQALTLVDNVLLHTSHETKWID 153
             +            +  ++ +K   S      RAL++++   L++      +H  K   
Sbjct: 88  VAQTAFNLGQMDADALARIKAVKGMRSDSEAAGRALSKEEVRLLLNAT---KTHPCKVRQ 144

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILE 212
            R+ A+L  L G GLR  E ++L   +      TL ++ GKG K R V + P V KA+  
Sbjct: 145 NRDRALLLTLCGAGLRAGELVTLESHDYDVATRTLTVRQGKGRKKRAVVVAPPVGKALAA 204

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +  +     +L  ++     + G+PL        +RQL+    + L  T H LR +F T 
Sbjct: 205 WIKVSADHDSLFCRIHRSGSVTGQPLTTAGLAGILRQLQETAQIHL-FTPHDLRRTFITR 263

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIY 298
           LL  G DL  ++ + GH  +STT +Y
Sbjct: 264 LLEQGTDLNIVRQLAGHSDISTTALY 289


>gi|228470648|ref|ZP_04055504.1| transposase [Porphyromonas uenonis 60-3]
 gi|313887085|ref|ZP_07820784.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|228307656|gb|EEK16635.1| transposase [Porphyromonas uenonis 60-3]
 gi|312923496|gb|EFR34306.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 406

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 70/319 (21%), Positives = 131/319 (41%), Gaps = 31/319 (9%)

Query: 14  LLKERQNWL----QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLS 67
           LL+  + +L    + + I+R L    L++Y+      L  L  Y ++K  +  I   QL 
Sbjct: 110 LLQSFEEYLRQTKERIGIDRALKTFKLRTYQ------LSLLREYLQKKYKVSDIPLSQLD 163

Query: 68  YTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
              I  F       +K+   S+  +LS +KS ++   K+ +      L   + ++    P
Sbjct: 164 KAFIEGFEYYLSIDRKLKRSSVSSALSTLKSIVRMAVKKGVLDFYPFLGY-SYERPKGEP 222

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R++++ Q   ++D   L    E   I      +       GL IS+  +L  +NI+ ++ 
Sbjct: 223 RSISQDQLQRIID---LEIEWENYRIV---RDLFVFSCFAGLAISDVRNLREENIVLEEG 276

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            L I+GK  K +    +  +  A                 +P             +    
Sbjct: 277 ELCIKGKRMKTKTPYRVQVLPPAWAIMERYRGKRAGFVFDVP----------TNDIIHNG 326

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +  ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQ+Y  V+S+ 
Sbjct: 327 MHYIQRNIGMESPLTFHMARHTFASLITLSAGVPIETVSQMLGHTNLRTTQVYAAVSSER 386

Query: 306 GGDWMMEIYDQTHPSITQK 324
               M  +  +   + T K
Sbjct: 387 IHREMQNVQQRIQDTFTLK 405


>gi|218295944|ref|ZP_03496724.1| integrase family protein [Thermus aquaticus Y51MC23]
 gi|218243682|gb|EED10210.1| integrase family protein [Thermus aquaticus Y51MC23]
          Length = 391

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/318 (20%), Positives = 130/318 (40%), Gaps = 27/318 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKR 78
            +L+ LE E GL   +++  + +    L  L      + +    ++++    +RA + + 
Sbjct: 77  EYLRRLERE-GLRPNSIRLAQGELAYALPSLKDPKAHDPLGRMRLQEVKPVHVRAAVDRV 135

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTL 137
                  R++ R L  +K+  +   + ++   +    ++  L K     RAL  ++   L
Sbjct: 136 IEAGYAPRTVARVLMRLKALFREALRLELVARNPAEAIQVRLPKGEKAARALEPEEVARL 195

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++      S +        + +L L+   GLR  EAL+L   ++  ++  +R+     K+
Sbjct: 196 LEAAEASRSRDM-------ALLLRLMLETGLRRGEALALQWGDVDLERGEVRVWRAWAKV 248

Query: 198 ---------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
                          R+VPL   + + +    +     LN      L      KP++P  
Sbjct: 249 GSKGAFTPLKTPTAKRVVPLPLGLLRRLKARKEELLERLNPEEVDGLHLVGGVKPVDPDA 308

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           F  Y+R+L    GL      H LRH++AT  LS G  L  +   LGH   + T  +Y ++
Sbjct: 309 FNHYLRRLAEKAGLGR-VRVHDLRHTWATLALSRGIPLEVVSERLGHASPTITLNVYRHL 367

Query: 302 NSKNGGDWMMEIYDQTHP 319
             +    +++++ D   P
Sbjct: 368 LEEERRGYVLDLEDLLSP 385


>gi|159897174|ref|YP_001543421.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890213|gb|ABX03293.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 328

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 62/305 (20%), Positives = 120/305 (39%), Gaps = 24/305 (7%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  + ++ E    +    + F     +      QL     +A  +K  + K    +    
Sbjct: 36  STNSQRTMEKQLHRLATMMGFADAHAV---PWSQLRVEHTQALWAKLASSK-SAATANLI 91

Query: 92  LSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLP-----RALNEKQALTLVDNVLLHT 145
           LS ++  LK   +  + T E     +       + P     R+L   +   L        
Sbjct: 92  LSALRGVLKMAWRMGLMTGEDYTRAVDLKTVKGNAPDAAAGRSLTAAELRALF----AAC 147

Query: 146 SHETKWIDARNSAILYLLY-GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           + ++  I  R++AIL L Y G GLR +E ++L   +   + + L I+GKG+K+R   +  
Sbjct: 148 AADSSPIGRRDAAILALAYAGGGLRRAEIVNLDLSDFNPETAMLTIRGKGNKVRTAYVRG 207

Query: 205 SVRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
             R+A+ E+  +   +   L   +Q     G   + L+        ++  +   +    +
Sbjct: 208 GAREALDEWLAVRGDEAGPLFWRLQAGGVAGQMYERLSDQAIYILCQRRGKEANV-RHFS 266

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH-PS 320
            H +R +F +  L  G D+ ++  + GH   +TT  Y     + G        D  H P 
Sbjct: 267 PHDIRRTFISDQLDAGTDVLTVARLAGHSNANTTSRY----DRRGERAKQAAADALHVPF 322

Query: 321 ITQKD 325
           I+Q++
Sbjct: 323 ISQQE 327


>gi|126661051|ref|ZP_01732135.1| phage integrase [Cyanothece sp. CCY0110]
 gi|126617662|gb|EAZ88447.1| phage integrase [Cyanothece sp. CCY0110]
          Length = 401

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 56/340 (16%), Positives = 120/340 (35%), Gaps = 56/340 (16%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
             +++   +++L+        +  T ++Y C  +QF+ +    T   +      + ++  
Sbjct: 17  DTQIIDFFKDFLETDVGNGKAADDTQRTYLCHLKQFVHWCQNQTLNPV------EATFAN 70

Query: 71  IRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLP 126
           ++ F     + Q+    ++   L+ ++ F   L + +  + +  L +R     +   +  
Sbjct: 71  LKRFRRWLVKEQQYQTATISLKLAVLRRFYDALLENEYISFNPALRLRPPTEVRDPAATI 130

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDD 184
             L  ++   L+D        E      R+  ++ L+   G R  +   +T +N+     
Sbjct: 131 NFLENEEMNRLLD----SLPTENTVHALRDRLLISLMVLQGCRTVDLHRVTMENMVKNGK 186

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI------RGKPL 238
              LR+  K     +       +               +  + PLF  +      + KPL
Sbjct: 187 NIGLRVSSKRHTRVVPLTPDLAKLLRRYLRARRKAGETITDETPLFISVARNNEEQDKPL 246

Query: 239 NPGVFQRYIRQLRRYLGL----------------------------------PLSTTAHT 264
           +   F+R + +    +GL                                  P   +AH+
Sbjct: 247 SRRSFRRIVDKYLGVIGLKELPCPKTLKKLTGSQEKSNLPTKAREFSQHKPKPRKLSAHS 306

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           LRH+ AT  L  G  L  +Q +LGH    TT IY ++  +
Sbjct: 307 LRHTAATLALRAGATLEQVQDLLGHTDPKTTMIYAHIGDR 346


>gi|320195795|gb|EFW70420.1| Putative integrase/recombinase [Escherichia coli WV_060327]
          Length = 309

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/267 (21%), Positives = 107/267 (40%), Gaps = 13/267 (4%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQ--TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97
                  L   A   +           QL+Y  +    +          S+  +LS ++ 
Sbjct: 30  RRGITSLLNRSAGILKRGADAAGYPWEQLNYAAVAKVRAALLDDGYAVSSVNMALSALRG 89

Query: 98  FLKYLKKRKITTESNILNMRNLKKS----NSLPRALNEKQALTLVDNVLLHTSHETKWID 153
             +            +  +R++K+         RAL+ ++   L+     H  H  ++  
Sbjct: 90  VAQTAFNLNCMNAETLARIRSVKRVSGDIQRKGRALDRQEIRALIHAAKQHPQHVRRY-- 147

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            R+ AI   L G GLR  E + L  ++  +   T+R QGKG K R + +  +V KAI  +
Sbjct: 148 -RDVAIALTLCGTGLRAGELVKLERRDYDNGVLTVR-QGKGRKYREIHVADAVDKAIRAW 205

Query: 214 YDLCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
             +   + +  +   + R  +   +PL        +  L++  G+    T H +R +F T
Sbjct: 206 LKVGADEADSALFSRIQRNGKVASQPLTTTGLTGILADLQQTSGIAR-FTPHDMRRTFIT 264

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIY 298
            LL  G D+ +++ + GH  +STT  Y
Sbjct: 265 RLLEQGVDINTVRQLAGHSDISTTTRY 291


>gi|325853917|ref|ZP_08171433.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325484254|gb|EGC87184.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 427

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/329 (20%), Positives = 123/329 (37%), Gaps = 28/329 (8%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           +   +P +   EL +    + + L+  R LSK T+++++   + F+ FL           
Sbjct: 102 QSRPMPTLA--ELYQSVCEYKEELQG-RTLSKATVRAFKDSYKSFVHFLQVRDRADCMPT 158

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            + +    + R F+   R     + S+   L  +   ++   + +   E     +     
Sbjct: 159 EVDKTLLEDYRLFM--LRDLGNKESSVGNRLRHLHQVIRKALQERYVREDPFELID---- 212

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              +     E+ ALT  D   L      + +D     I  L    GL  S+   L   ++
Sbjct: 213 ---IETPTYERNALTADDLQKLLAYRPHRSVDNHCRLIFLLGCFTGLAFSDLKKLRMDDV 269

Query: 182 M---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
               D +  + +     + R +  L  + + IL        +     + P          
Sbjct: 270 YTFGDGRRYISLCRTKTQNRSIVPLLPIAEKILAIVSPGRREGLFFREFP---------- 319

Query: 239 NPGVFQRYIRQLRRYLGLPLS--TTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTT 295
           +   F R I+++    GLP     T+HT RH+FAT   L NG  + ++  +LGH  +STT
Sbjct: 320 SNSNFNRTIQEICIKAGLPPHTQATSHTARHTFATTICLENGLPIETVSKMLGHRFISTT 379

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           +IY  V        M  +    H  + +K
Sbjct: 380 EIYARVTKSKIAKEMQPLMGSEHTRVLRK 408


>gi|332994822|gb|AEF04877.1| phage integrase family site-specific recombinase [Alteromonas sp.
           SN2]
          Length = 305

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 117/295 (39%), Gaps = 27/295 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            L+  + +S           L +  + +  +    ++ Y +     +   +     RS+ 
Sbjct: 13  RLAPSSQRSIASQLNSIADQLDWPRQGREAM--FCKIDYQQASRIKAMLLSNGWSARSIN 70

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMR---NLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           R+++ I++ +K      IT E   L ++    +K  N     L+ KQ   L     +  S
Sbjct: 71  RAMTAIRNIVKVAVLSGITDEMQALQLQTITKVKHGNHRGTPLSSKQVEKLF----VTLS 126

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS 205
                I  R+ AI  LL G GLR SE ++L   +   D  TL I+ GKG+K R V L   
Sbjct: 127 KNHSLIGIRDHAIFALLLGTGLRRSELVTLMYADYSPDFQTLFIRQGKGNKSRTVYLPHW 186

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRG-------IRGKPLNPGVFQRYIRQLRRYLGLPL 258
               ++++  +       +I  PLF             PL+       IR      G+  
Sbjct: 187 SNDLLMDWVQIR-----GSICGPLFLRIARGGHIQPDSPLSTSFIYSLIRSTLASHGIE- 240

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             + H LR +F T LL    DL +++ + GH  ++TT IY     K     M + 
Sbjct: 241 GVSPHDLRRTFITRLLEQNVDLNTVRQMAGHADIATTIIY----DKRHEKVMKKA 291


>gi|298245229|ref|ZP_06969035.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297552710|gb|EFH86575.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 368

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/343 (19%), Positives = 126/343 (36%), Gaps = 54/343 (15%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------------AFYTE 55
           E     +    +++L +  ++R L+  T   Y  +   F  +              ++  
Sbjct: 12  ERAPISVSDAVKDFLASPNVKR-LAHTTQIGYTLELVVFANWCDTHGLAQNPTSKEWHVV 70

Query: 56  EKITIQTIRQLSYTEIRAFISKRR---------TQKIGDRSLKRSLSGIKSFLKYLKKRK 106
                 ++ Q++   +  ++   +          ++I   +L R    IK+FL +    +
Sbjct: 71  SGKGQISLDQINDRVMMLYLDDFKQTHRPSRADREEISTYTLSRVSRVIKTFLNWCVLDE 130

Query: 107 ----ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
                    +I  ++  K    +      +Q   L          E++ +  R+ AIL  
Sbjct: 131 QYSQYVLSISIQRIKKPKVEEVIIETFTIEQIEALFAACDRE---ESEHLQVRDRAILAC 187

Query: 163 LYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEY------- 213
           L   G+R  E  +LT  N+  D     +R+ GKG K   V L    R+AI +Y       
Sbjct: 188 LLDSGIRAHELCTLTIGNVCLDSKDAHIRVFGKGGKWGEVGLGEQARRAIQKYVRMFREP 247

Query: 214 ---YDLCPFDLNLNIQLP------------LFRGIRGKPLNPGVFQRYIRQLRRYLGLP- 257
              Y++      L  +              +F    GK L      R + +L  + G+  
Sbjct: 248 TIEYEIREQLQRLPARQAQQIKRQALGKALVFVNRSGKALTISGLYRMVDRLGSWAGIEG 307

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +  + HT RH+ A   + NGG++  +  +L H  +STT+ Y  
Sbjct: 308 VRCSPHTFRHTMAAMFIRNGGNIYQLSKLLRHASVSTTEEYLK 350


>gi|168210502|ref|ZP_02636127.1| putative integrase/recombinase [Clostridium perfringens B str. ATCC
           3626]
 gi|170711397|gb|EDT23579.1| putative integrase/recombinase [Clostridium perfringens B str. ATCC
           3626]
          Length = 280

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/295 (20%), Positives = 118/295 (40%), Gaps = 25/295 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +++  E +RGL+  T + YE + + FL F+   T+++++   +       ++ +   
Sbjct: 6   LNEFIRY-EFDRGLTLETTKRYEREIKCFLKFIKIKTDKELS-DLLEDEIKMCLKKYKMN 63

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +K    ++   +  I  FL++ +               ++K   +   L+E + L L
Sbjct: 64  LEKEKYKPSTINGKIIIINKFLRFCEIE------VKEKCVKIQKKPYITNVLSESEYLRL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++             + R+  I+ +L   GLR+SE LSL  + I      ++I+GKG K 
Sbjct: 118 LNVCD----------NFRDKVIIRVLANTGLRVSELLSLEIREIY--NGDIQIKGKGAKY 165

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R       + K I +Y +      + +         R   L      + + +  +   + 
Sbjct: 166 RECFCSSEIIKLIKQYIETERLGTDKSKVF----TGRKGALKRQAINKMLFKYAKKAHIK 221

Query: 258 L-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
                 H+LRH F  +L      L  I++ +GH  + TT IYT    +   D + 
Sbjct: 222 KEKAHPHSLRHLFGKNLAERRVSLDVIKTFMGHEDIRTTAIYTKRTREELVDTLE 276


>gi|310779272|ref|YP_003967605.1| integrase domain protein SAM domain protein [Ilyobacter polytropus
           DSM 2926]
 gi|309748595|gb|ADO83257.1| integrase domain protein SAM domain protein [Ilyobacter polytropus
           DSM 2926]
          Length = 283

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/297 (16%), Positives = 128/297 (43%), Gaps = 26/297 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+ ++ ++G S+ ++++Y  D   F +FL    ++ + ++ +      ++ +FI   +
Sbjct: 7   EFLKFIKDKKGFSESSIEAYRKDLEDFTVFL--MGKDYVEVEDL------DVMSFIETMK 58

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +   + S+ R L  +++F KYL K+ I  +     ++ +K +  +P  L  ++   +++
Sbjct: 59  KE-YSENSIYRKLVSLRAFYKYLYKKGIVEKLPTEGLKPVKPTVQMPETLEWEEVERIIN 117

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                     +    R+  ++ +L   GL ISE L +   +I+  +       K +++  
Sbjct: 118 QC------GNQPKGERDKLVIEMLLQSGLLISEVLEIKISDIISTEYKKIKYVKNNRLHF 171

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           + +   + + I  + +     +  +    LF+G+         F    ++  +  G+  +
Sbjct: 172 IEIGNELSEKIKSFVNEDREKVVNSEDDFLFQGV-----TRQNFGARFKKYGQKAGISQN 226

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
              + LR++ A   L +  D   ++  +   +L  T +Y         D + E+Y +
Sbjct: 227 IYPNMLRNTLAKKYLDSSID--DVKDKMHLEKLEGTGVYI----TRNLDKIRELYME 277


>gi|237737268|ref|ZP_04567749.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817]
 gi|229421130|gb|EEO36177.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817]
          Length = 325

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 62/305 (20%), Positives = 128/305 (41%), Gaps = 27/305 (8%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI----RQLSYTEIRAFISKR-RTQ 81
            E   S+ T++ Y    + FL ++  Y  E I    +    + +   ++  ++S     +
Sbjct: 28  FETYRSQKTIKDYLFYLKDFLQYI--YEGENIRADELIDLMKDIEKQDVEDYLSHLIEDR 85

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL--NEKQALTLVD 139
           K+   S+ + +S +KS  K ++K      +    +   K S ++   L  + +    ++ 
Sbjct: 86  KMKKTSVNKVISALKSLYKEMEKNGY--PNPFKYVELFKVSRNIDNVLKLSAEDIKKIIG 143

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDK 196
              +    E      RN  ILY L+  G+R SE ++L  +++++ +    I+    K  K
Sbjct: 144 QYTIKGEKE-----YRNITILYTLFYTGMRSSELINLKFKHLLNREGNYFIKLEETKSGK 198

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQ----LPLFRGI--RGKPLNPGVFQRYIRQL 250
            +   + P++ + +LEY        +++ +      +F     +   L+       I+  
Sbjct: 199 EQYKSIYPTLVEKLLEYKKYKQMFFSISDENIEEQYIFNSSIEKNTKLSYRTLYDIIQNF 258

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            + +G     + H +RH+ AT L  NG D+  I+  LGH     T+IY N  S      +
Sbjct: 259 GKIIG--KDISPHNIRHAVATELSLNGADILEIRDFLGHSDTRVTEIYINAKSVLEKRVL 316

Query: 311 MEIYD 315
            ++ D
Sbjct: 317 EKLPD 321


>gi|298528636|ref|ZP_07016040.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298512288|gb|EFI36190.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 414

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 67/300 (22%), Positives = 126/300 (42%), Gaps = 25/300 (8%)

Query: 37  QSYEC-DTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           ++Y+  DT + L     + +  I      +++   +     + R   +  RS+  +LS +
Sbjct: 120 KAYKSWDTERHL--YKKWIQPFIGEVFFTKVTAFHLEKIKKEMRDASLSPRSIGYALSVV 177

Query: 96  KSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +    Y     I      +  ++     N   R L   +A  L+D +   +       + 
Sbjct: 178 RQVFCYASDHGIFEGVDPVSLVKMPHYDNRRIRFLTHSEAEILLDVLCFSS------QNT 231

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEY 213
            + A++ L   CG R  E  SLT Q+I   Q  +  +  K   +R +P+   VRK +   
Sbjct: 232 HDIALIAL--HCGPRAGEIFSLTWQDIDFSQGLVTFRDTKNKYVRHIPITKRVRKMLER- 288

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL---STTAHTLRHSFA 270
                 D +  +  P   G R K ++   F+R I++L    G+         HTLRH+ A
Sbjct: 289 ---RSDDRSSALVFPDRNGGRRKKVS-KAFERTIKELGWNKGIDDPRQKVVFHTLRHTCA 344

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS---KNGGDWMMEIY-DQTHPSITQKDK 326
           + L+  G  L +++  LGH ++S T+ Y ++     K   + + +I   ++ P I+ K K
Sbjct: 345 SWLVMAGVPLYTVKEYLGHKQISQTERYAHLAPDSLKQATEALNKINSHKSEPGISGKAK 404


>gi|147668708|ref|YP_001213526.1| phage integrase family protein [Dehalococcoides sp. BAV1]
 gi|146269656|gb|ABQ16648.1| phage integrase family protein [Dehalococcoides sp. BAV1]
          Length = 332

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 67/279 (24%), Positives = 115/279 (41%), Gaps = 20/279 (7%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            LS  T+ +Y     +F+ F   +      +    Q++   +     ++     G +S+ 
Sbjct: 42  QLSPATISNYRYMCGKFVDFCQEH-----GVTKPAQITSIHLGL-FLQQLQLTNGPQSVT 95

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
                I+ F+ +LK     T   +  +R  K    + +   ++    L     L      
Sbjct: 96  DYFKQIRPFINWLKDNGQITVDPLKQVRLPKVPRKVIQPFTQEHCQRL-----LALVSGE 150

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
            + D RN A++ LL   GLR+ E   L   +I  D   +++ GKG K RIV + P V++A
Sbjct: 151 TFEDKRNKALILLLLDTGLRLRECTELKWSDINYDSELVKVMGKGAKERIVRIGPKVQRA 210

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIR--------GKPLNPGVFQRYIRQLRRYLGLP-LST 260
           +LEY  L       +    ++              PL      + I  L +  G+  +  
Sbjct: 211 LLEYQYLKIQSFPGDKTPDVWVSRHKTRYSDKECHPLTKNGIMQTIVVLGKRAGITNIRC 270

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           + HT RH+FAT  L NG     +QS++GH  L+ T+ Y 
Sbjct: 271 SPHTFRHTFATMCLRNGAGEFEVQSLMGHSTLTQTRKYA 309


>gi|283970301|gb|ADB54783.1| integrase [Aeromonas hydrophila]
          Length = 280

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 57/299 (19%), Positives = 111/299 (37%), Gaps = 64/299 (21%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
                +     F  + +   P    +R   +    FQR  ++     G+    T HTLR
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLR 280


>gi|182627230|ref|ZP_02954933.1| tyrosine recombinase XerD [Clostridium perfringens D str. JGS1721]
 gi|177907367|gb|EDT70067.1| tyrosine recombinase XerD [Clostridium perfringens D str. JGS1721]
          Length = 280

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 59/295 (20%), Positives = 120/295 (40%), Gaps = 25/295 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +++  E +RGL+  T + YE + + FL F+   T+++++ + +       ++ +   
Sbjct: 6   LNEFIRY-EFDRGLTLETTKRYEREIKYFLKFIKIKTDKELS-ELLEDEIKMCLKKYKMT 63

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +K    ++   +  I  FL++ +               ++K   +   L+E + L L
Sbjct: 64  LEKEKYKPSTINGKIIIINKFLRFCEIE------VKEKCVKIQKKPYITNVLSESEYLRL 117

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++             + R+  I+ +L   GLR+SE LSL  + I      ++I+GKG K 
Sbjct: 118 LNVCD----------NFRDKVIIRVLANTGLRVSELLSLEIREIY--NGDIQIKGKGAKY 165

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R       + K I +Y +    + + +         R   L      + + +  +   + 
Sbjct: 166 RECFCSSEIIKLIKQYIETERLETDKSKVF----TGRKGALKRQAINKMLFKYAKKAHIK 221

Query: 258 L-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
                 H+LRH F  +L      L  I++ +GH  + TT IYT    +   D + 
Sbjct: 222 KEKAHPHSLRHLFGKNLAERRVSLDVIKTFMGHEDIRTTAIYTKRTREELVDTLE 276


>gi|116629648|ref|YP_814820.1| site-specific tyrosine recombinase XerS [Lactobacillus gasseri ATCC
           33323]
 gi|116095230|gb|ABJ60382.1| Site-specific recombinase XerD [Lactobacillus gasseri ATCC 33323]
          Length = 356

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 66/355 (18%), Positives = 133/355 (37%), Gaps = 42/355 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY------T 54
           ME N    ++  EL     ++++   +    S  T   Y  + R+F  +L         +
Sbjct: 1   METNRYLTLIKQEL-ANMPDFVKEYNLGTSHSLTTTYQYLTEIRRFFDWLRQNKISTASS 59

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKI------GDRSLKRSLSGIKSFLKY------- 101
            ++I + T+  +   ++  +I   +  K          ++ RS++ ++S  K+       
Sbjct: 60  NKEIELSTLEGMQRNDVMLYIHYLKHTKNQQGRLNSPTTINRSINALRSLYKFLTITSDN 119

Query: 102 LKKRKITTESNILNMRNLKKSNSL---PRALN--------EKQALTLVDNVLLHTSHET- 149
                    + +L + +L  + +L      L         + Q L  ++N   H  ++  
Sbjct: 120 NHGEPYFDRNVMLKIDSLNDTKTLNYRAHVLESHMYMGDLKYQFLDFIENEYEHKCNKQS 179

Query: 150 ----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
               K    R+ AI+ L+ G G+R+SE + +  +NI      L +  KG +   VP+   
Sbjct: 180 LPSFKKNHERDIAIIALILGTGIRVSECVGVNVRNINLKDEMLDVVRKGGQKDSVPIADW 239

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLSTT 261
               + +Y  +     + N     F   R       +     ++ + +     G     T
Sbjct: 240 TIPYLKKYQKIRTDRYHANKNDIAFFLTRWHGKTRRMTANAVEKMVNKYSAAFG--KPLT 297

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            H LRH+ A+ L     D   +   LG    + T +YT+V+ K   D + +I   
Sbjct: 298 PHKLRHTLASELYEVTKDQVLVAQQLGQKGTTATDLYTHVDQKKQKDALNKINRH 352


>gi|292669090|ref|ZP_06602516.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292649253|gb|EFF67225.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 392

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 56/282 (19%), Positives = 107/282 (37%), Gaps = 16/282 (5%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T  +YE   R FL +       +  +  +  +   +IR ++ + RT+     +L    + 
Sbjct: 97  TRDTYELAIRLFLHWC-----MEQNLHPLSDVHDYQIRIYMEEMRTRGYSAATLMIKGAA 151

Query: 95  IKSFLKYLKKRKITTESNILNM--RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           I++F K  ++     E+   ++  RN +  +   + L   Q   + + +    + +    
Sbjct: 152 IRAFYKVAQRLSFIAENPCADLQLRNPQHLDEDYKYLTVDQIKEICEGL---AADQNALR 208

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
             RN  I+YL+   GLR+ E + L+ ++I   +  + I+GKG    I+       + +  
Sbjct: 209 RLRNLLIVYLMGVEGLRVVEVMRLSDEDIDWQRGRIEIRGKG-HAGIIYPCEETFQLLKA 267

Query: 213 YYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRH 267
           Y +        N   P      R      +     +  I +     GL       H  RH
Sbjct: 268 YIEERGPVPPENRLTPTVISCARNNAQGRITRVGIRYVINKALTDAGLKQPGYACHLFRH 327

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           S  T+L     DLR +Q  L       T  Y +V+ +    +
Sbjct: 328 SCGTNLYQETKDLRVVQETLRQRSPKVTAKYAHVHDRMERRY 369


>gi|313157227|gb|EFR56657.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 402

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 110/291 (37%), Gaps = 30/291 (10%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR------RTQKIGDRSLKRSLS 93
           + D  Q  I +    +    + T+ Q+     R +I+        + + I + +L     
Sbjct: 130 KKDGSQIKIAMRILKDYAGEMVTLDQIDGDFCRGYITYLLTEYHPKGKDISNYTLHNYYR 189

Query: 94  GIKSFLKYLKKRKITTESNILNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +   L    ++K    +    +     ++K  S+   +  ++   L+D  + H  +E  
Sbjct: 190 ALNGALNSAVRKKKMKANPFNELEKSEKIRKPESMRSYMTIEEVQALIDTPMPHEEYEIV 249

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVR 207
                          CGLRIS+ + L   ++  D+   R+     K  +   +PL P   
Sbjct: 250 ------KCAYLFSCFCGLRISDIIKLKWNDVFVDRGQYRLAVSMKKTKEPIYLPLSPEAL 303

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           K + E       D   ++             +    +  ++   +  G+    + HT RH
Sbjct: 304 KWMPERGGKSSEDNVFDLP------------SANTIRMQLKPWAKAAGISKRFSYHTSRH 351

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           +FAT +L+ G DL ++  +LGH  +  TQ+Y  + +K   + +  +    H
Sbjct: 352 TFATMMLTLGADLYTVSKLLGHADVKMTQVYAKIINKKKDEAVNLVNGLFH 402


>gi|167772512|ref|ZP_02444565.1| hypothetical protein ANACOL_03890 [Anaerotruncus colihominis DSM
           17241]
 gi|167665615|gb|EDS09745.1| hypothetical protein ANACOL_03890 [Anaerotruncus colihominis DSM
           17241]
          Length = 305

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 66/318 (20%), Positives = 122/318 (38%), Gaps = 43/318 (13%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ME     ++++ +LL++   +L++   E+  S  T+  Y         FL          
Sbjct: 21  MESKVQTQVITQKLLRQFAAYLRD--QEKSCS--TIAQYNRGLAALHRFLQG-------- 68

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
                ++   + A+      +     S+   L+ +  FL +              ++ LK
Sbjct: 69  ---APVTKHALIAWKEHLM-RHYAAASVNAMLAAVNGFLSFCGWSD-------CRVKPLK 117

Query: 121 KSNSL----PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
               L     + L+ ++ L LV   +   +            +L  +   G+R+SE L +
Sbjct: 118 IQRELFCREEQELSREEYLRLVRAAVQSGNERLS-------LVLQTICSTGIRVSELLFI 170

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
           T + +   ++ +R +GK    R + L   +R+A+  Y              P+F    GK
Sbjct: 171 TAEAVRGGRAVVRCKGK---TRYILLPERLRRALSAYL-----AKQKRAAGPVFITRTGK 222

Query: 237 PLNPGVFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           PL+     R ++ L +  G+       H LRH FA    S   DL  +  ILGH  ++TT
Sbjct: 223 PLDRSNIWRDMKALCKRAGVKAGKVFPHNLRHLFARTFYSLEKDLSRLADILGHTNVATT 282

Query: 296 QIYTNVNSKNGGDWMMEI 313
           +IYT  +       M  +
Sbjct: 283 RIYTVESGAAHRRQMERM 300


>gi|205356361|ref|ZP_03223126.1| DNA recombinase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205345746|gb|EDZ32384.1| DNA recombinase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|315058313|gb|ADT72642.1| Integrase-recombinase protein XERCD family [Campylobacter jejuni
           subsp. jejuni S3]
          Length = 354

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 127/283 (44%), Gaps = 24/283 (8%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y    ++   +L FY      + +++Q+    I   ++   T  + D S K     +
Sbjct: 73  VNTYFNPLKKVFEYLNFYK-----LYSLKQIDEELIVEVLAS-ITGALSDASKKNYRIAV 126

Query: 96  KSFLKYLKKRKITTESNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTSH 147
            +F  +L K+    E   +   NLK        K   LP  ++E++    +D +    + 
Sbjct: 127 INFFDFLDKQNEEDEKAHIFDINLKNWAGIAGSKGVKLPEFMSEEELKKFLDAIE---NA 183

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ--STLRIQGKGDKIRIVPLLPS 205
           + K    RN  I+ ++   G+R+SEA+++   +I ++     +RI+ KG+K R+V +   
Sbjct: 184 DFKNNTIRNKLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVVMIKKE 243

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHT 264
           +   +L+   +     +      LF   +G PL      R + QL    G+      AH 
Sbjct: 244 LIYDLLKNVSINYMSKDA----LLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHM 299

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           LRH+FAT L     DL  +Q  LGH  L+T++IYT+ ++    
Sbjct: 300 LRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLK 342


>gi|157737437|ref|YP_001490120.1| integrase/recombinase XerD [Arcobacter butzleri RM4018]
 gi|157699291|gb|ABV67451.1| integrase/recombinase XerD [Arcobacter butzleri RM4018]
          Length = 350

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 64/285 (22%), Positives = 120/285 (42%), Gaps = 24/285 (8%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y     +   FL         + +++++    +  F++   T  + D S K     +
Sbjct: 73  VNTYFNPLFKLYNFLI-----NSGLASMKEIDEELLSDFLAS-ETSSLSDASKKNHRIAL 126

Query: 96  KSFLKYLKKRKITTESNILNMR---------NLKKSNSLPRALNEKQALTLVDNVLLHTS 146
            SF  Y+ K+    + +    +         + K    LP  +N+ +    +    +   
Sbjct: 127 LSFFSYIDKQNQNEDGSSYLFKIELKNWGGLSGKSGTKLPSFMNKDEIDRFLKA--IDDF 184

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLP 204
             T     RN  I+ ++   G+R+SE L+L  ++I  + +   L+I+GKG+K R+V +  
Sbjct: 185 EFTDNTGFRNRLIIKIIIYTGIRVSEILNLRIKDIFKEDNVYMLQIRGKGNKPRVVMIKS 244

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AH 263
           S    I+E       D+ +     L    +G+ L      R +  +    G+      AH
Sbjct: 245 S----IIEKELQNWLDMRVCNSDLLVCNQKGERLTQAYISRVVENILISAGIRKEKNGAH 300

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            LRHSFAT L     DL  +Q  LGH  ++T++IYT+ + +    
Sbjct: 301 MLRHSFATLLYQKHHDLILVQEALGHADINTSRIYTHFDKERLKK 345


>gi|57237704|ref|YP_178952.1| phage integrase family site specific recombinase [Campylobacter
           jejuni RM1221]
 gi|57166508|gb|AAW35287.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni RM1221]
          Length = 354

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 127/283 (44%), Gaps = 24/283 (8%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y    ++   +L FY      + +++Q+    I   ++   T  + D S K     +
Sbjct: 73  VNTYFNPLKKVFEYLNFYK-----LYSLKQIDEELIVEVLAS-ITGALSDASKKNYRIAV 126

Query: 96  KSFLKYLKKRKITTESNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTSH 147
            +F  +L K+    E   +   NLK        K   LP  ++E++    +D +    + 
Sbjct: 127 INFFDFLDKQNEEDEKAHIFDINLKNWAGIAGSKGVKLPEFMSEEELKKFLDAIE---NA 183

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ--STLRIQGKGDKIRIVPLLPS 205
           + K    RN  I+ ++   G+R+SEA+++   +I ++     +RI+ KG+K R+V +   
Sbjct: 184 DFKNNTIRNKLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVVMIKKE 243

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHT 264
           +   +L+   +     +      LF   +G PL      R + QL    G+      AH 
Sbjct: 244 LIYDLLKNVSINYMSKDA----LLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHM 299

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           LRH+FAT L     DL  +Q  LGH  L+T++IYT+ ++    
Sbjct: 300 LRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLK 342


>gi|86152145|ref|ZP_01070357.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|86153297|ref|ZP_01071501.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|121612957|ref|YP_001000547.1| phage integrase family site specific recombinase [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|315124372|ref|YP_004066376.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
 gi|85840930|gb|EAQ58180.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|85843023|gb|EAQ60234.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|87249540|gb|EAQ72500.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|315018094|gb|ADT66187.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
          Length = 354

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 127/283 (44%), Gaps = 24/283 (8%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y    ++   +L FY      + +++Q+    I   ++   T  + D S K     +
Sbjct: 73  VNTYFNPLKKVFEYLNFYK-----LYSLKQIDEELIVEVLAS-ITGALSDASKKNYRIAV 126

Query: 96  KSFLKYLKKRKITTESNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTSH 147
            +F  +L K+    E   +   NLK        K   LP  ++E++    +D +    + 
Sbjct: 127 INFFDFLDKQNEEDEKAHIFDINLKNWAGIAGSKGVKLPEFMSEEELKKFLDAIE---NA 183

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ--STLRIQGKGDKIRIVPLLPS 205
           + K    RN  I+ ++   G+R+SEA+++   +I ++     +RI+ KG+K R+V +   
Sbjct: 184 DFKNNTIRNKLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVVMIKKE 243

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHT 264
           +   +L+   +     +      LF   +G PL      R + QL    G+      AH 
Sbjct: 244 LIYDLLKNVSINYMSKDA----LLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHM 299

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           LRH+FAT L     DL  +Q  LGH  L+T++IYT+ ++    
Sbjct: 300 LRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLK 342


>gi|319644101|ref|ZP_07998650.1| hypothetical protein HMPREF9011_04253 [Bacteroides sp. 3_1_40A]
 gi|317384343|gb|EFV65312.1| hypothetical protein HMPREF9011_04253 [Bacteroides sp. 3_1_40A]
          Length = 381

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 110/291 (37%), Gaps = 30/291 (10%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR------RTQKIGDRSLKRSLS 93
           + D  Q  I +    +    + T+ Q+     R +I+        + + I + +L     
Sbjct: 109 KKDGSQIKIAMRILKDYAGEMVTLDQIDGDFCRGYITYLLTEYHPKGKDISNYTLHNYYR 168

Query: 94  GIKSFLKYLKKRKITTESNILNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +   L    ++K    +    +     ++K  S+   +  ++   L+D  + H  +E  
Sbjct: 169 ALNGALNSAVRKKKMKANPFNELEKSEKIRKPESMRSYMTIEEVQALIDTPMPHEEYEIV 228

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVR 207
                          CGLRIS+ + L   ++  D+   R+     K  +   +PL P   
Sbjct: 229 ------KCAYLFSCFCGLRISDIIKLKWSDVFVDRGQYRLAVSMKKTKEPIYLPLSPEAL 282

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           K + E       D   ++             +    +  ++   +  G+    + HT RH
Sbjct: 283 KWMPERGGKSSEDNVFDLP------------SANTIRMQLKPWAKAAGISKRFSYHTSRH 330

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           +FAT +L+ G DL ++  +LGH  +  TQ+Y  + +K   + +  +    H
Sbjct: 331 TFATMMLTLGADLYTVSKLLGHADVKMTQVYAKIINKKKDEAVNLVNGLFH 381


>gi|172055124|ref|YP_001806451.1| integrase/recombinase [Cyanothece sp. ATCC 51142]
 gi|171701405|gb|ACB54385.1| integrase/recombinase [Cyanothece sp. ATCC 51142]
          Length = 409

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 64/347 (18%), Positives = 124/347 (35%), Gaps = 61/347 (17%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           I   ++L    ++L         +  T+++Y C  +QF+ +    T   I      + ++
Sbjct: 18  ISDTQILNFFDDFLNTDVGNGRAADDTVRTYLCHLKQFVHWCQTNTLNPI------EATF 71

Query: 69  TEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNS 124
             ++ F     + Q+    ++   L+ ++ F   L + +  + +  L +R     K   +
Sbjct: 72  ANLKRFRRWLVKEQQYQTATISLKLAVLRRFYDALLENEYISFNPALRLRPPTEVKDPAA 131

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
               L  ++   L+D        E      R+  ++  +   G R ++   +   NI+ D
Sbjct: 132 TINYLQSEEMSRLLD----SLPAENTVHALRDRFLVSAMVLQGFRTADLHRVCVGNIVRD 187

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRG------IRGK 236
              + ++       R+VPL P + K +  Y         L     PLF           K
Sbjct: 188 GKNVGLRVSSKRHTRVVPLTPDLAKLLRCYLRARRKAGELITESTPLFLSVARNNKKMWK 247

Query: 237 PLNPGVFQRYIRQLRRYLGL---------------------------------------P 257
           PL+   F+R + +    +GL                                       P
Sbjct: 248 PLSRRSFRRIVDKYLNAIGLKELPRPQNPKKLTGSQEKKNLPTTGKSKKAHNLSKYKPKP 307

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              +AH+LRH+ AT  L  G  L  +Q +LGH    TT +Y ++  +
Sbjct: 308 RKLSAHSLRHTAATLALRAGATLEQVQDLLGHTDPKTTMVYVHIGDR 354


>gi|218249160|ref|YP_002374530.1| integrase domain protein SAM domain protein [Cyanothece sp. PCC
           8801]
 gi|218169736|gb|ACK68470.1| integrase domain protein SAM domain protein [Cyanothece sp. PCC
           8801]
          Length = 314

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 115/290 (39%), Gaps = 29/290 (10%)

Query: 22  LQNLEIE-----RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           LQN+ +E     + LS  + ++Y  +   FL  +          +   ++    I  +  
Sbjct: 21  LQNVRVEEFLATKALSPNSQKAYRRELLTFLAIVN---------KPFARIQSRHIVQYKV 71

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           +  T+K+   S+ R+LS + SF  +  +      +  L +R  K      R L++ +   
Sbjct: 72  QL-TEKLAPSSVNRALSALSSFFDW-LEEAYGNPNPTLTIRQNKLPLPPARDLSDAELEA 129

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L +  L +  + TK    R+ A+   L   GLR  E  SL   +    +  +R+  K D 
Sbjct: 130 LFEA-LENRPNLTK---VRDKAVFAALRH-GLRAGEVASLNLGDYDGIRLHIRV-AKDDS 183

Query: 197 IRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNP-----GVFQRYIRQL 250
              VPL    R AI  Y         + N   PLF      P  P          +I++L
Sbjct: 184 SGHVPLDAPGRDAINTYLQQRRETGESFNPTSPLFLSHSPVPNTPPRFGYQGIYYFIKEL 243

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               G+  + T H LRH+FAT LL  G +    +++  H    + + Y  
Sbjct: 244 GEMAGVA-NLTPHRLRHTFATQLLLTGMEPLHARTLTRHKSEVSFKRYAK 292


>gi|298388238|ref|ZP_06997757.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14]
 gi|298259004|gb|EFI01909.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14]
          Length = 160

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/146 (32%), Positives = 76/146 (52%), Gaps = 7/146 (4%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLC 217
           +  +LY  GLRISE L L P +I + +S +R++ GKG K R   L   + K + EY  L 
Sbjct: 1   MFSILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSKPLMKKLTEYNRLY 60

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
                   ++ LF    G+P    +  + ++   R  G+      H LRHSFATHLL  G
Sbjct: 61  ------KPKVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQG 114

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNS 303
            D++ ++ ++GH  + TT+ Y ++  
Sbjct: 115 TDIKIVKELMGHNNIKTTERYVHIAD 140


>gi|293372928|ref|ZP_06619297.1| phage integrase, N-terminal SAM domain protein [Bacteroides ovatus
           SD CMC 3f]
 gi|292631996|gb|EFF50605.1| phage integrase, N-terminal SAM domain protein [Bacteroides ovatus
           SD CMC 3f]
          Length = 368

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 55/310 (17%), Positives = 119/310 (38%), Gaps = 41/310 (13%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E++S +  K   +++  L      S  T+  Y    R++  +               +L+
Sbjct: 94  EVISEKNKKLLNDFIIWLTDNNDYSSHTIDVYYTSLRKYFEYA-------------NELN 140

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
               R FI     +K+   +++  ++ I+ F K++KK         + ++  +    L  
Sbjct: 141 MDNCRRFIKSLEEEKLSPATIRLRITAIEKFSKWVKK--------PIELKRPRMKRKLDV 192

Query: 128 --ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
                E++   L++ +          ++      + +L   G R+SE    T ++I    
Sbjct: 193 NNVPTEEEYNRLLEYL-------KTKLNKDYYFFIKVLGTTGARLSEFQQFTWEDI--AA 243

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             + ++GKG+K R       +++ + +Y         L +        R  PL      +
Sbjct: 244 GEVVLKGKGNKYRRFFFQKQLQREVKDYIKETGKSGTLAVG-------RFGPLTQRGLSQ 296

Query: 246 YIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN-S 303
           +++   ++ G+      AH  RH FA   L    D+  +  +LGH  + TT+IY   +  
Sbjct: 297 HLKVWGKHCGIDSKKMHAHAFRHFFAKMFLKKTKDVIQLADLLGHGSVDTTRIYLQKSYD 356

Query: 304 KNGGDWMMEI 313
           +   D+   +
Sbjct: 357 EQQRDFNKNV 366


>gi|29565931|ref|NP_817502.1| gp53 [Mycobacterium phage Cjw1]
 gi|109302806|ref|YP_654808.1| gp53 [Mycobacterium phage 244]
 gi|194303347|ref|YP_002014372.1| gp51 [Mycobacterium phage Porky]
 gi|29424656|gb|AAN01667.1| gp53 [Mycobacterium phage Cjw1]
 gi|88910097|gb|ABD58028.1| gp53 [Mycobacterium phage 244]
 gi|194150832|gb|ACF33868.1| gp51 [Mycobacterium phage Porky]
 gi|255928372|gb|ACU41988.1| gp54 [Mycobacterium phage Pumpkin]
          Length = 293

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 60/300 (20%), Positives = 119/300 (39%), Gaps = 21/300 (7%)

Query: 10  VSFELLKERQN-WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++ +LL E ++ WL  L   R  S  T+++Y      +L F             +  L  
Sbjct: 1   MTDDLLAELKDSWLMELRAAR-KSAETIRAYGGSVEGYLNFCVE--------GELAPLEK 51

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             + A+++   +  +   ++   L+ +K F++++   +      +L +R  K    + + 
Sbjct: 52  ASLLAWVNSMAS--LQPATVHLRLTAVKQFMRWVADEEGVNVDGLLVVRPPKLDQKVVKH 109

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+++    LV      T     + D R+ A++ L    G+R +E L+L  +++      L
Sbjct: 110 LSDRAVQALV-----ATCAGNTFRDRRDKALIVLFTETGIRAAEMLALDVEDVSLVDCQL 164

Query: 189 RI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
            + +GKG K R V   P     I +Y            + PL+ G+ G  L+    +  +
Sbjct: 165 TVRRGKGAKGRRVKYSPMCAATIDKYLRAR-RRAGHGSEGPLWIGL-GGRLSYTGMKSSL 222

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++     G+P     H LRH+ A   L  GG    + +  G         Y    ++   
Sbjct: 223 KRRADDAGVP-GFHPHRLRHTSAVRWLKAGGSEAGLMAQAGWQSRRQIDRYIKSAAEELA 281


>gi|149184910|ref|ZP_01863227.1| phage integrase [Erythrobacter sp. SD-21]
 gi|148831021|gb|EDL49455.1| phage integrase [Erythrobacter sp. SD-21]
          Length = 338

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 61/273 (22%), Positives = 112/273 (41%), Gaps = 20/273 (7%)

Query: 13  ELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            L      +L ++L  ER +S  T+++Y       + F +   + + T   I       I
Sbjct: 3   ALAPHLTAFLREHLPRERAVSPHTVKTYANCFVLLVRFASDRLKRRPTDLEIEDFGTDMI 62

Query: 72  RAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPR 127
            AF+      +    R+    L+ I+SF +Y++ R        L +R++   K + +L  
Sbjct: 63  MAFLGHVEVERGSCVRTRNGRLAAIRSFFRYIEYRVPACLDQALRVRSIPSKKANKTLID 122

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQS 186
            L+  +   L+D            +  R+ A+L+L Y  GLR+SE +SL  ++      S
Sbjct: 123 YLDRAEIKALLD-----APDPRTRLGTRDRAMLHLTYAAGLRVSELVSLQLRDFPDRSLS 177

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           T+ I GKG + R++PL    + A+  +  + P          +F    G+P+    F   
Sbjct: 178 TVHIMGKGRRERVLPLWKETQSALRAWLVIRPETEVAE----VFLNANGQPITRDGFAFR 233

Query: 247 IRQLRRYLGLPLSTTAHTLR--HSFATHLLSNG 277
              L +++          LR  H+ +    S G
Sbjct: 234 ---LAKHVNAAAKKQPSFLRDAHARSDRRYSQG 263


>gi|295084504|emb|CBK66027.1| Site-specific recombinase XerC [Bacteroides xylanisolvens XB1A]
          Length = 368

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 56/310 (18%), Positives = 119/310 (38%), Gaps = 41/310 (13%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E++S +  K   +++  L      S  T+  Y    +Q+  +               +L+
Sbjct: 94  EVISEKNKKLLNDFIIWLTDNNDYSLHTVDIYHTSLKQYFEYA-------------NELN 140

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
               R FI     +K+   +++  ++ I+ F K++KK         + ++  K    L  
Sbjct: 141 MDNCRRFIKSLEEEKLSPATIRLRITAIEKFSKWVKK--------PIELKRPKMKRKLDV 192

Query: 128 --ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
                E++   L++ +          ++      + +L   G R+SE    T ++I    
Sbjct: 193 NNVPTEEEYNRLLEYL-------KTKLNKDYYFFIKVLGTTGARLSEFQQFTWEDIAI-- 243

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             + ++GKG+K R       +++ + +Y         L +        R  PL      +
Sbjct: 244 GEVVLKGKGNKYRRFFFQKQLQREVKDYIKETGKSGTLAVG-------RFGPLTQRGLSQ 296

Query: 246 YIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN-S 303
           +++   ++ G+      AH  RH FA   L    D+  +  +LGH  + TT+IY   +  
Sbjct: 297 HLKVWGKHCGIDSKKMHAHAFRHFFAKMFLKKTKDVIQLADLLGHGSVDTTRIYLQKSYD 356

Query: 304 KNGGDWMMEI 313
           +   D+   +
Sbjct: 357 EQQRDFNKNV 366


>gi|288801169|ref|ZP_06406624.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331780|gb|EFC70263.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 439

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 59/289 (20%), Positives = 110/289 (38%), Gaps = 18/289 (6%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           R    F+       I I++I +  + E R F+   + + +   S+   L  +   +    
Sbjct: 137 RMLCEFIKDLGSTDIEIRSITEELFEEYRFFL---KKKGLKGSSINNYLCWLSRLMFRAV 193

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
            ++I   +   +    K   ++ R L++     L+   +  +  E          +    
Sbjct: 194 SQRIIRYNPFEHAEYEKVEKAI-RFLSKSDVKKLMAMKICDSDAELA------RQMFIFS 246

Query: 164 YGCGLRISEALSLTPQNIM---DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
              GL I++   LT  +I    D Q  +R  + K     IVPL P  +  I +   L   
Sbjct: 247 CFTGLAITDMEHLTFGHIKSAADGQMYIRKERQKTKVEFIVPLHPIAKTIIEQQRQLKAV 306

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
               N      R I     +  V    +  + +  G+    + H  RH+F T  LS G  
Sbjct: 307 KEEGNNTDMDNRLIFQPCCSRSVLAAKLSIVGKACGIKQRLSYHMGRHTFGTMCLSAGIP 366

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           + SI  ++GH  +++TQIY  V      + M ++  +      +K+K+N
Sbjct: 367 IESIAKMMGHTSIASTQIYAQVTDCKISEDMDKLIAKHQ----EKNKEN 411


>gi|283957150|ref|ZP_06374614.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|283791326|gb|EFC30131.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 1336]
          Length = 354

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 127/283 (44%), Gaps = 24/283 (8%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y    ++   +L FY      + +++Q+    I   ++   T  + D S K     +
Sbjct: 73  INTYFNPLKKVFEYLNFYK-----LYSLKQIDEELIVEVLAS-ITGALSDASKKNYRIAV 126

Query: 96  KSFLKYLKKRKITTESNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTSH 147
            +F  +L K+    E   +   NLK        K   LP  ++E++    +D +    + 
Sbjct: 127 INFFDFLDKQNEEDEKAHIFNINLKNWAGIAGSKGVKLPEFMSEEELKKFLDAIE---NA 183

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ--STLRIQGKGDKIRIVPLLPS 205
           + K    RN  I+ ++   G+R+SEA+++   +I ++     +RI+ KG+K R+V +   
Sbjct: 184 DFKNNTIRNKLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVVMIKKE 243

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHT 264
           +   +L+   +     +      LF   +G PL      R + QL    G+      AH 
Sbjct: 244 LIYDLLKNVSINYMSKDA----LLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHM 299

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           LRH+FAT L     DL  +Q  LGH  L+T++IYT+ ++    
Sbjct: 300 LRHTFATLLYKKQKDLILVQEALGHASLNTSRIYTHFDNDKLK 342


>gi|89098276|ref|ZP_01171161.1| tyrosine recombinase [Bacillus sp. NRRL B-14911]
 gi|89087133|gb|EAR66249.1| tyrosine recombinase [Bacillus sp. NRRL B-14911]
          Length = 389

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 63/330 (19%), Positives = 125/330 (37%), Gaps = 46/330 (13%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTE------EKITIQTIRQLSYTEIRAFISKRR---- 79
             S  TL +Y  D R F  +L             I +  +  L   + + F    +    
Sbjct: 54  NRSSSTLLNYLHDYRIFFEWLIREGITDSVQIRDIPLSVLENLKLDDAKNFFKYLQRREI 113

Query: 80  ------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTE-------SNILNMRNLKKSNSL- 125
                 T+K    S+ R +S ++S  KYL  +    E       + +L +   K   +L 
Sbjct: 114 PINKNETKKPEKVSINRKISSLRSLFKYLTTQTENEEGEPYFYRNVMLKIEVNKVKETLG 173

Query: 126 -------PRALNEKQALTLVD----NVLLHTSHET------KWIDARNSAILYLLYGCGL 168
                   +     + ++ +D            ++      K    R+ AIL L  G G+
Sbjct: 174 ARASKISSKIFQNDEDVSFLDFVQNIYETELPEDSRKKAYFKRDKERDIAILSLFLGSGI 233

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
           R++E  +L  +++   ++T+ I  KG K   +P++P   + +     +     N + +  
Sbjct: 234 RVNELSNLRLRDLDFQENTINIIRKGGKQDTIPVVPESMEDVKNLLKIRAERYNASNEDY 293

Query: 229 --LFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             +F   +     PL+       +++  +      S + H LRH++ T+L    GD+  +
Sbjct: 294 DYVFVNKKKNVAVPLSNRAIGDLVKKYTKAFKSNKSMSPHKLRHTYGTNLWEETGDIHLL 353

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              LGH   ST  +Y+N + +       ++
Sbjct: 354 MRQLGHSSTSTAALYSNPDQEKAKQAAKQL 383


>gi|58698751|ref|ZP_00373635.1| tyrosine recombinase XerC, putative [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58534724|gb|EAL58839.1| tyrosine recombinase XerC, putative [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 261

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 58/247 (23%), Positives = 109/247 (44%), Gaps = 20/247 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  L  ER  ++ TL+SY  D  QF  FL        +  T+  ++ T I+ ++    T
Sbjct: 18  YIDALASERFAAQNTLESYRSDLHQFEEFLLE------SGTTLVGVNKTNIKDYVKSLCT 71

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNI----LNMRNLKKSNSLPRALNEKQAL 135
           Q K    S+ R +S +K+F K L    I   +        ++N K S  LP+ L+ ++  
Sbjct: 72  QKKYKSSSISRKISAMKNFYKCLFNDGIIDFNPAPANDAELKNPKVSRPLPKYLSVEEIF 131

Query: 136 TLVDNVLLHTSHETKWIDARNS-AILYLLYGCGLRISEALSLTPQ------NIMDDQSTL 188
            L+D V    S   K I ++   AIL +LY  G+R+SE +S+         N  + +  +
Sbjct: 132 LLMDTVRKSASESNKEISSKRLCAILDILYSSGMRVSELISMKLCEVSHLINSNNKECYI 191

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGK-PLNPGVFQRY 246
            I+GK  + R +       +++  Y  +    ++   +   LF G +   P+      + 
Sbjct: 192 IIKGKSGRERQILFNEQALQSLRNYLSVRDNLISKEKESDWLFPGDKPNKPITTQRVGQL 251

Query: 247 IRQLRRY 253
           ++ + + 
Sbjct: 252 MKGVGKK 258


>gi|302387561|ref|YP_003823383.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302198189|gb|ADL05760.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 285

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 64/304 (21%), Positives = 120/304 (39%), Gaps = 43/304 (14%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M        ++ EL+K    +L+    E+  S  T++ Y+ D      FL          
Sbjct: 1   MSQAKKKRDITPELIKRFSVYLR----EQEKSTSTIEKYKRDLAVLCNFLGDV------- 49

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             I + +  + + ++    T+     S+   L+ + +FL +     +        ++ LK
Sbjct: 50  -PITKSALIDWKEYL----TRNYAAASVNTMLAAVNAFLNFAGWIDL-------KVKPLK 97

Query: 121 KSNSL----PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              +L     + L  K+ L LV       +            ++  +   G+R+SE   +
Sbjct: 98  IQRNLFCREEKELTRKEYLRLVQAAEREGNQRLS-------LVIQSICATGIRVSELQFI 150

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
           T + +   ++ +  +GK    R + L   +R+A++ Y              P+F    GK
Sbjct: 151 TMEAVQAGRADVNCKGK---TRTIFLPEKLRRALISY-----ARRQKRSFGPVFVTKTGK 202

Query: 237 PLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           PL+     R ++ L +   + P     H LRH FA    +   DL  +  ILGH  ++TT
Sbjct: 203 PLDRSNIWRDMKDLCKSADVKPEKVFPHNLRHLFARIYYTLEKDLFRLADILGHSNINTT 262

Query: 296 QIYT 299
           +IYT
Sbjct: 263 RIYT 266


>gi|253571052|ref|ZP_04848460.1| integrase [Bacteroides sp. 1_1_6]
 gi|251840001|gb|EES68084.1| integrase [Bacteroides sp. 1_1_6]
          Length = 381

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 110/291 (37%), Gaps = 30/291 (10%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR------RTQKIGDRSLKRSLS 93
           + D  Q  I +    +    + T+ Q+     R +I+        + + I + +L     
Sbjct: 109 KKDGSQIKIAMRILKDYAGEMVTLDQIDGDFCRGYITYLLTEYHPKGKDISNYTLHNYYR 168

Query: 94  GIKSFLKYLKKRKITTESNILNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +   L    ++K    +    +     ++K  S+   +  ++   L+D  + H  +E  
Sbjct: 169 ALNGALNSAVRKKKMKANPFNELEKSEKIRKPESMRSYMTIEEVQALIDTPMPHEEYEIV 228

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVR 207
                          CGLRIS+ + L   ++  D+   R+     K  +   +PL P   
Sbjct: 229 ------KCAYLFSCFCGLRISDIIKLKWNDVFVDRGQYRLAVSMKKTKEPIYLPLSPEAL 282

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           K + E       D   ++             +    +  ++   +  G+    + HT RH
Sbjct: 283 KWMPERGGKSSEDNVFDLP------------SANTIRMQLKPWAKAAGISKRFSYHTSRH 330

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           +FAT +L+ G DL ++  +LGH  +  TQ+Y  + +K   + +  +    H
Sbjct: 331 TFATMMLTLGADLYTVSKLLGHADVKMTQVYAKIINKKKDEAVNLVNGLFH 381


>gi|157415130|ref|YP_001482386.1| phage integrase family site specific recombinase [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|157386094|gb|ABV52409.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|307747772|gb|ADN91042.1| Site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni M1]
          Length = 354

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 68/283 (24%), Positives = 124/283 (43%), Gaps = 24/283 (8%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y    ++   +L FY      + +++Q+    I   ++   T  + D S K     +
Sbjct: 73  VNTYFNPLKKVFEYLNFYK-----LYSLKQIDEELIVEVLAS-ITGALSDASKKNYRIAV 126

Query: 96  KSFLKYLKKRKITTESNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTSH 147
            +F  +L K+    E   +   NLK        K   LP  ++E++    +D +      
Sbjct: 127 INFFDFLDKQNEEDEKAHIFDINLKNWAGIAGSKGVKLPEFMSEEELKKFLDAIENADFR 186

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ--STLRIQGKGDKIRIVPLLPS 205
                  RN  I+ ++   G+R+SEA+++   +I ++     +RI+ KG+K R+V +   
Sbjct: 187 NNT---VRNKLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVVMIKKE 243

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHT 264
           +   +L+   +     +      LF   +G PL      R + QL    G+      AH 
Sbjct: 244 LIYDLLKNVSINYMSKDA----LLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHM 299

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           LRH+FAT L     DL  +Q  LGH  L+T++IYT+ ++    
Sbjct: 300 LRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLK 342


>gi|260170629|ref|ZP_05757041.1| putative phage integrase/recombinase [Bacteroides sp. D2]
          Length = 368

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 55/310 (17%), Positives = 119/310 (38%), Gaps = 41/310 (13%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E++S +  K   +++  L      S  T+  Y    R++  +               +L+
Sbjct: 94  EVISEKNKKLLNDFIIWLTDNNDYSSHTIDVYYTSLRKYFEYA-------------NELN 140

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
               R FI     +K+   +++  ++ I+ F K++KK         + ++  +    L  
Sbjct: 141 MDNCRRFIKSLEEEKLSPATIRLRITAIEKFSKWVKK--------PIELKRPRMKRKLDV 192

Query: 128 --ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
                E++   L++ +          ++      + +L   G R+SE    T ++I    
Sbjct: 193 NNVPTEEEYNRLLEYL-------KTKLNKDYYFFIKVLGTTGARLSEFQQFTWEDI--AT 243

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             + ++GKG+K R       +++ + +Y         L +        R  PL      +
Sbjct: 244 GEVVLKGKGNKYRRFFFQKQLQREVKDYIKETGKSGTLAVG-------RFGPLTQRGLSQ 296

Query: 246 YIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN-S 303
           +++   ++ G+      AH  RH FA   L    D+  +  +LGH  + TT+IY   +  
Sbjct: 297 HLKVWGKHCGIDSKKMHAHAFRHFFAKMFLKKTKDVIQLADLLGHGSVDTTRIYLQKSYD 356

Query: 304 KNGGDWMMEI 313
           +   D+   +
Sbjct: 357 EQQRDFNKNV 366


>gi|90421232|ref|ZP_01229131.1| integrase/recombinase [Aurantimonas manganoxydans SI85-9A1]
 gi|90334507|gb|EAS48293.1| integrase/recombinase [Aurantimonas manganoxydans SI85-9A1]
          Length = 318

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 66/316 (20%), Positives = 123/316 (38%), Gaps = 25/316 (7%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +V+    +    +L+     R  ++ T ++Y      FL +   Y      + +I  +  
Sbjct: 15  LVAAAGERASMRFLEFFAS-RIRNRNTRRAYGRAIGAFLAWCEAY-----GVTSITAVRS 68

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR- 127
             + AFI +  T+K    + K+ LS I+    +L   ++   +   ++R    S    + 
Sbjct: 69  LHVAAFIEEL-TRKRSAPTAKQQLSAIRMLFDWLVVGQVVPVNPAASVRGPSHSVRRGKT 127

Query: 128 -ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             L+  +A  L+D         T     R+ A++ L+    +R+  AL +  +++     
Sbjct: 128 PVLDPTEARQLLD-----AIDVTTPAGLRDRALIGLMIYSFVRVGAALGMKVEDVYVQNR 182

Query: 187 TLRIQ--GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-------RGKP 237
            L ++   KG K   +P   ++   +  Y D C   +  + + PLFR I         KP
Sbjct: 183 RLWVRLNEKGGKRHEMPCHHNLEGYLHSYLDGCG--IAEDCRGPLFRTIGRGTRELTTKP 240

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L        I++     G+      HT R +  T  L NGG L    ++  H    TTQ+
Sbjct: 241 LAQANAYAMIQRRTAAAGIGTKIGNHTFRATGITAYLKNGGTLERAAAMANHASTRTTQL 300

Query: 298 YTNVNSKNGGDWMMEI 313
           Y     +   D +  I
Sbjct: 301 YDRRKDEVTLDEVERI 316


>gi|315932644|gb|EFV11575.1| phage integrase family protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 354

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 68/283 (24%), Positives = 124/283 (43%), Gaps = 24/283 (8%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y    ++   +L FY      + +++Q+    I   ++   T  + D S K     +
Sbjct: 73  VNTYFNPLKKVFEYLNFYK-----LYSLKQIDEELIVEVLAS-ITGALSDASKKNYRIAV 126

Query: 96  KSFLKYLKKRKITTESNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTSH 147
            +F  +L K+    E   +   NLK        K   LP  ++E++    +D +      
Sbjct: 127 INFFDFLDKQNEEDEKAHIFDINLKNWAGIAGSKGVKLPEFMSEEELKKFLDAIENADFR 186

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ--STLRIQGKGDKIRIVPLLPS 205
                  RN  I+ ++   G+R+SEA+++   +I ++     +RI+ KG+K R+V +   
Sbjct: 187 NNT---VRNKLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVVMIKKE 243

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHT 264
           +   +L+   +     +      LF   +G PL      R + QL    G+      AH 
Sbjct: 244 LIYDLLKNVSINYMSKDA----LLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHM 299

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           LRH+FAT L     DL  +Q  LGH  L+T++IYT+ ++    
Sbjct: 300 LRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLK 342


>gi|109897057|ref|YP_660312.1| phage integrase [Pseudoalteromonas atlantica T6c]
 gi|109699338|gb|ABG39258.1| phage integrase [Pseudoalteromonas atlantica T6c]
          Length = 305

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 64/282 (22%), Positives = 124/282 (43%), Gaps = 15/282 (5%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            L+  + +S +    +    + +  +++   + + Q+ Y        +        +S+ 
Sbjct: 13  RLAPNSRRSIKSQLYKVAEIMEWPPDKR--DEMLHQVDYQTACQIKVELIQHGSSSKSVN 70

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR---ALNEKQALTLVDNVLLHTS 146
           R++S I++ +K      +  E+ ++ +  +K   +       LN  Q  TL   +  HTS
Sbjct: 71  RAMSAIRNVVKVGVIMGLVPENQLIQLSAIKLEKTSQHQGNPLNATQVNTLFSYLNKHTS 130

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS 205
                ID RN AI  LL G GLR SE  +L  ++++  +  L +Q GKG+K R   L   
Sbjct: 131 ----IIDVRNQAIFALLLGAGLRRSELTALHLKDLILHERQLVVQKGKGNKRRTAFLPKW 186

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
             + +  +  L   D    +  P+ +  R    + +        +R   + +GL  + + 
Sbjct: 187 CVEHVYSWLLLR-GDNAGYLFNPVNKTNRININRGITTESVYLLVRNTAKQVGLG-NVSP 244

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           H LR ++ T LL    DL +++ + GH  +STT +Y   ++K
Sbjct: 245 HDLRRTYITRLLEQNIDLNTVRLMAGHQDISTTVVYDKRDNK 286


>gi|167621620|ref|YP_001672128.1| integrase family protein [Caulobacter sp. K31]
 gi|167645969|ref|YP_001683632.1| integrase family protein [Caulobacter sp. K31]
 gi|167646192|ref|YP_001683855.1| integrase family protein [Caulobacter sp. K31]
 gi|167348399|gb|ABZ71134.1| integrase family protein [Caulobacter sp. K31]
 gi|167348622|gb|ABZ71357.1| integrase family protein [Caulobacter sp. K31]
 gi|167351743|gb|ABZ74469.1| integrase family protein [Caulobacter sp. K31]
          Length = 403

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 63/303 (20%), Positives = 118/303 (38%), Gaps = 27/303 (8%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           EI    LL + + +L     +RGLS  ++       R+FL +          +    +L 
Sbjct: 102 EIARATLLADFETYLAK---QRGLSPRSIPHSVGFARRFLDYRFGKA-----LPDPGRLC 153

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--- 124
             ++  F+         D+++    + ++ FL+YL  R  T  +  L++   K +     
Sbjct: 154 PADVIGFMEHVLASARRDKTVA---THVRIFLQYLFARGATATNLALSV--PKTAKRWAA 208

Query: 125 -LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            +PR L+      ++      +  +     AR+ A+L ++   GLR +E +++   +I  
Sbjct: 209 RMPRHLSPDGVEAVL-----ASVRDNHLHGARDYAMLLVMARLGLRAAEVVAIQLDDIDW 263

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
               L ++GKG     +PL   V  A+  Y                 R       +  + 
Sbjct: 264 RAGELMVRGKGKLHDRLPLTAEVGDALSRYLREERGPATCRTLFVAHRAPHRPFKDGTIV 323

Query: 244 QRYIRQLRRYLGLPLSTTA----HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
              ++   +  G     T     H LRHS AT L++ G  L  +  +L H   S+T IY 
Sbjct: 324 NAILKDALKATG-QKPVTPYVGSHLLRHSLATQLVNTGASLDEVGDMLRHRSRSSTMIYA 382

Query: 300 NVN 302
            ++
Sbjct: 383 RLD 385


>gi|255008897|ref|ZP_05281023.1| putative phage integrase/recombinase [Bacteroides fragilis 3_1_12]
          Length = 368

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 55/300 (18%), Positives = 112/300 (37%), Gaps = 41/300 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             +++  L      S  T+  Y    +++  +               +++    R FI  
Sbjct: 104 LNDFIVWLTDNNDYSPHTVDLYHTSMKKYFEYA-------------NEVNMDNCRRFIKM 150

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR--ALNEKQAL 135
              +K    +++  ++ I+ F K++KK         L ++  K    L       E +  
Sbjct: 151 LEEEKFAPATIRLRITAIERFSKWMKK--------PLELKRPKMKRKLDTNNVPTEDEYN 202

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L++ +   ++ +           + +L   G R+SE L  T ++I+  + TL+  GKG+
Sbjct: 203 RLLEYLKTKSNKD-------YYFFIRVLGTTGARLSEFLQFTWEDIISGEVTLK--GKGN 253

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R       +++ +  Y   C        +  LF   R  P+      + ++      G
Sbjct: 254 KYRRFFFQKQLQQEVKAYAKEC-------GKTGLFAVGRFGPMTQRGLSQGMKAWGNCCG 306

Query: 256 L-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN-SKNGGDWMMEI 313
           +       H  RH FA   L    D+  +  +LGH  + TT+IY   +  +   D+   +
Sbjct: 307 IDKKKMHPHAFRHFFAKMFLKKNKDVIQLADLLGHGSVDTTRIYLQKSYDEQKRDFNKNV 366


>gi|289192574|ref|YP_003458515.1| integrase family protein [Methanocaldococcus sp. FS406-22]
 gi|288939024|gb|ADC69779.1| integrase family protein [Methanocaldococcus sp. FS406-22]
          Length = 326

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 73/335 (21%), Positives = 136/335 (40%), Gaps = 35/335 (10%)

Query: 1   MEGNNL---------PEIVSFELLKERQNWLQNLEIER---GLSKLTLQSYECDTRQFLI 48
           M+GN L         P+    E   E + W+     ER   G+ + T++S   D  +  +
Sbjct: 1   MKGNGLNFKNLLLVKPKREKVEESPEIKKWVDRFREEREFDGIKESTIRS---DILRLRV 57

Query: 49  FLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI 107
           FL F Y     T +T+    +     ++ K R  K+   S  +    +K F + ++    
Sbjct: 58  FLDFVYNRLNKTPETMTNADFVRFFNYLEKER--KVSRSSQDKYFKLLKVFYRLMRLNNF 115

Query: 108 TT--ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
               E +    R  K       A++      +++ ++         +  RN  I+ LL+ 
Sbjct: 116 REFAEESKERRRFSKFEVKHYDAIDANALNLILEKMM----ESNSRMSIRNCLIVRLLWD 171

Query: 166 CGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
            G RISE L+L  ++   D+ T RI   K  + R+V       +A+  Y     F+   N
Sbjct: 172 TGARISEVLNLKYKDCDFDEGTFRITNTKTHEERVVVCSSDTLEALRWY---VQFNPRQN 228

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQ----LRRYLGLPLS--TTAHTLRHSFATHLLSNGG 278
               +F+  +G+ ++     +  ++    L++   +P +     H+LRH  A  LL  G 
Sbjct: 229 SDDYIFQTPKGERVSKDTIYKVFKRAVDELKKEGKIPKNKRIVLHSLRHGRAVDLLDKGV 288

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            +  ++  LGH  L TT  Y++ + +     +  I
Sbjct: 289 PIDIVKEYLGHRSLDTTLYYSH-SKERALKMLKTI 322


>gi|167625964|ref|YP_001676258.1| integrase family protein [Shewanella halifaxensis HAW-EB4]
 gi|167355986|gb|ABZ78599.1| integrase family protein [Shewanella halifaxensis HAW-EB4]
          Length = 313

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 62/285 (21%), Positives = 110/285 (38%), Gaps = 21/285 (7%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
            C     L    +  E  +  Q    L+Y +I      +  +    R++   +  +K+ +
Sbjct: 23  RCQLNTVLKLFNWKGE--VEAQPFHTLNYAQIEYVKRHKLDEGKSPRTVNLVVFALKAIV 80

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLP----RALNEKQALTLVDNVLLHTSHETKWIDAR 155
           K      +  +     ++ +K+    P    +AL+      L+    L   H    I  R
Sbjct: 81  KTGFLMGMVDDIQWRQVQAVKRLPINPSSRGKALSSNSVGELITTCYLDKRH----IGKR 136

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY 214
           +  IL L    GLR  E  +LT  +I  D+ TL ++ GKG K R  P        I  + 
Sbjct: 137 DCCILALFLSTGLRRFELANLTVSDIHLDKRTLTVKSGKGKKPRKQPFPTWALTYIDSWL 196

Query: 215 DLCPFDLNLNIQLPLFRG--IRGKPLNPGVFQRYIRQLRRYL-GLPLSTTAHTLRHSFAT 271
            +  +    ++  P++       + L+     + ++       G+    + H LR +F T
Sbjct: 197 RVRTYQPG-DLFNPIWNNVIKHDRGLSCAALYQIVKARTLEATGIT--ISPHDLRRTFIT 253

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            LL+   DL +   + GH  ++TTQIY     K     M E  +Q
Sbjct: 254 ELLNQKVDLSTASKLAGHANVTTTQIY----DKRDESVMREAINQ 294


>gi|160886776|ref|ZP_02067779.1| hypothetical protein BACOVA_04789 [Bacteroides ovatus ATCC 8483]
 gi|298383599|ref|ZP_06993160.1| tyrosine type site-specific recombinase [Bacteroides sp. 1_1_14]
 gi|156107187|gb|EDO08932.1| hypothetical protein BACOVA_04789 [Bacteroides ovatus ATCC 8483]
 gi|298263203|gb|EFI06066.1| tyrosine type site-specific recombinase [Bacteroides sp. 1_1_14]
          Length = 381

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 111/291 (38%), Gaps = 30/291 (10%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR------RTQKIGDRSLKRSLS 93
           + D  Q  I +    +    + T+ Q+     R +I+        + + I + +L     
Sbjct: 109 KKDGNQIKIAMRILKDYAGEMVTLDQIDGDFCRGYITYLLTEYHPKGKDISNYTLHNYYR 168

Query: 94  GIKSFLKYLKKRKITTESNILNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +   L    ++K    +    +     ++K  S+   +  ++   L+D  + H  +E  
Sbjct: 169 ALNGALNSAVRKKKMKANPFNELEKSEKIRKPESMRSYMTIEEVQALIDTPMPHEEYEIV 228

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVR 207
                          CGLRIS+ + L  +++  D+   R+     K  +   +PL P   
Sbjct: 229 ------KCAYLFSCFCGLRISDIIKLKWKDVFVDRGQYRLAVSMKKTKEPIYLPLSPEAL 282

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           K + E       D   ++             +    +  ++   +  G+    + HT RH
Sbjct: 283 KWMPERGGKSSEDNVFDLP------------SANTIRMQLKPWAKAAGISKRFSYHTSRH 330

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           +FAT +L+ G DL ++  +LGH  +  TQ+Y  + +K   + +  +    H
Sbjct: 331 TFATMMLTLGADLYTVSKLLGHADVKMTQVYAKIINKKKDEAVNLVNGLFH 381


>gi|57242638|ref|ZP_00370575.1| integrase/recombinase (xerC) [Campylobacter upsaliensis RM3195]
 gi|57016567|gb|EAL53351.1| integrase/recombinase (xerC) [Campylobacter upsaliensis RM3195]
          Length = 354

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 68/283 (24%), Positives = 126/283 (44%), Gaps = 24/283 (8%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y    ++   +L FY      + +++Q+    I   ++   T  + D S K     +
Sbjct: 73  VSTYFNPLKKLFDYLTFYK-----LHSLKQIDEALIVEILASI-TGALSDASKKNYRIAV 126

Query: 96  KSFLKYLKKRKITTESNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTSH 147
            +F  +L K+        +   NLK        +   LP  ++E +    ++ +    + 
Sbjct: 127 MNFFDFLNKQNEEDSKAHIFDINLKNWAGISGARGTKLPEFMSEDELKKFLEAID---NA 183

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPS 205
           + K    RN  I+ ++   G+R+SEAL +  ++I ++     +RI  KG+K R+V +   
Sbjct: 184 DFKANTIRNKLIIKIIIFTGIRVSEALHIKLKDISEEDGLYHIRIHAKGNKYRLVMIKKE 243

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHT 264
           +   +L+   +      L+    LF   +G PL      R + Q+    G+      AH 
Sbjct: 244 LISTLLDNVKINY----LSQDSLLFVNKKGTPLTQAYVSRIVEQILFKAGIRKQKNGAHM 299

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           LRH+FAT L     DL  +Q  LGH  L+T++IYT+ +S+   
Sbjct: 300 LRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDSEKLK 342


>gi|312880385|ref|ZP_07740185.1| integrase family protein [Aminomonas paucivorans DSM 12260]
 gi|310783676|gb|EFQ24074.1| integrase family protein [Aminomonas paucivorans DSM 12260]
          Length = 309

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 62/311 (19%), Positives = 115/311 (36%), Gaps = 34/311 (10%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
             L +  + +L    ++  L+  T+++     RQF    A   +E      +R L +   
Sbjct: 12  PTLSQMVEEYLDERSLD--LAPSTVKNQGYILRQFA---AQSQDEGNRADAVRLLQHA-- 64

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
                                + +K F  +   +   T++    +R  K ++        
Sbjct: 65  -----------KSPNVHNLYRATLKCFFDWCISQGYRTDNPGEGIRTKKGTHKFIDT--- 110

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
              +  +D+ +      T ++  R+ A +  L   G R +EA  L P+++   Q    ++
Sbjct: 111 --PVQALDSFIREGFDTTTYVGLRDKAAVLFLIDTGARPNEAWQLRPEDVDLVQGIALLR 168

Query: 192 ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
               K    R V       K +       P        +P+F    G P+    F   +R
Sbjct: 169 AETTKTRTPRTVFFSKPTAKLLNTLLGNRPDW--WGPDVPIFAASTGSPMTSTEFGHRLR 226

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            +    GL  + T ++LRH FAT+ L  GG    +Q ILGH  ++ T  Y N+N ++   
Sbjct: 227 PVTARFGL--NLTVYSLRHIFATNFLRGGGSALELQRILGHSNMTMTTRYANLNRED--- 281

Query: 309 WMMEIYDQTHP 319
            + E +    P
Sbjct: 282 -LQEAHRHASP 291


>gi|300727862|ref|ZP_07061241.1| integrase/recombinase, phage integrase family [Prevotella bryantii
           B14]
 gi|299774846|gb|EFI71459.1| integrase/recombinase, phage integrase family [Prevotella bryantii
           B14]
          Length = 216

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 90/223 (40%), Gaps = 21/223 (9%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           +++R LS   SF  +L++     +S +  +  +K   ++     ++    + D+      
Sbjct: 5   NIRRILS---SFFSWLEEENYIVKSPVRRIHKVKVGKTVKETYTDEALEQMRDHC----- 56

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                 + R+ A++ LL   G+R+ E + L   +I        + GKGDK R V      
Sbjct: 57  -----SNIRDLALIDLLASTGMRVGELVRLNKNDIDYQNRECIVTGKGDKQRKVYFDART 111

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGI--RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           +  + +Y +        +    LF  +      L     +  +R+L R L +P     H 
Sbjct: 112 KIHLQKYVNSR-----TDTNDALFVSLLSPNNRLEISGVEIRLRRLGRELNIPK-VHPHK 165

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            R + AT  +  G  +  +Q +LGH  L TT  Y  VN  N  
Sbjct: 166 FRRTLATMAIDKGMPIEQVQHLLGHQSLDTTLQYAMVNQNNVK 208


>gi|163783234|ref|ZP_02178228.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881568|gb|EDP75078.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 369

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 103/270 (38%), Gaps = 22/270 (8%)

Query: 41  CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLK 100
              R++   +  +   +   + + +++   ++ ++++R +Q +   ++ + +  +K   K
Sbjct: 78  STFRRYEGIIRNHFMPRFGDKKLSRITTGMLQGYVAERLSQ-VSPTTVLQEVVLLKEMFK 136

Query: 101 YLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
           + +       +   N++  ++       L  ++   L++N                    
Sbjct: 137 HAQSWGYIKHNPAQNLQRPRREKKEIDILTPEEVEFLLEN-----------THEHYRVAF 185

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK-------GDKIRIVPLLPSVRKAILEY 213
                 GLR  E   L   +I      + ++           K R       +   ++E 
Sbjct: 186 LTAVMTGLRAGELWGLKWDDIDWHSKQIYVRRTLWNGEFHTPKSRHSIGKVDMPDVLVEE 245

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
             L       N    +F   +G+P  +  V  RY +   R  GL +  + H+LRH+ A+ 
Sbjct: 246 LKLWEIRCPPNKYNLVFPSPKGEPSEHQNVVNRYFKPALRRAGLRV-VSFHSLRHTNASI 304

Query: 273 LLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
            +  G +++ IQ  LGH  ++TT  IY ++
Sbjct: 305 RIRAGQNIKYIQRQLGHASINTTLDIYGHL 334


>gi|322836802|ref|YP_004210716.1| integrase [Acidobacterium sp. MP5ACTX9]
 gi|321165889|gb|ADW71589.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 317

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 96/275 (34%), Gaps = 21/275 (7%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  + ++Y      F+ +                   T +  +  +  ++++   ++   
Sbjct: 34  SAASKRTYGAAIEDFITWYCSEPRLAFG--------RTVVLRYRYELESRRLAPATINLG 85

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR----ALNEKQALTLVDNVLLHTSH 147
           L+ ++          +        +R +K    L       L   Q   L+         
Sbjct: 86  LAAVRRLAYEASDNGLLNPDLAAGIRRVKGVKRLGMRLGNWLTADQGKKLL-----AVPA 140

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--GKGDKIRIVPLLPS 205
                D R+ A+L LL GCGLR +E  SLT  +   D     +   GK   IR VP+   
Sbjct: 141 SNSTRDKRDYAVLALLLGCGLRRAELTSLTLGHQQRDGHWAIVNLFGKCGHIRTVPVPSW 200

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           V+ A+  +            +     G    P ++  +    +R+     G+      H 
Sbjct: 201 VKVALDRWVIAASISEGAIFRRVSRTGTVWGPRISEKLVWWIVRRRAETAGIEK-LAPHD 259

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           LR + A    + GG+L  IQ +LGH    TT+ Y 
Sbjct: 260 LRRTCARLCHAAGGELEQIQFLLGHRSAETTERYL 294


>gi|158320580|ref|YP_001513087.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
 gi|158140779|gb|ABW19091.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
          Length = 405

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 69/333 (20%), Positives = 132/333 (39%), Gaps = 40/333 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-------KITIQTIRQLSYTEI 71
           +++   L+   G++  T  +Y  D   F  +L   T+         IT+    +++   I
Sbjct: 74  RDFFTYLKN--GVALSTRLAYLSDVLFFCKYLIKETDITSAEEVIHITVDDFNKITAKTI 131

Query: 72  RAFISKRRTQ------------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN---M 116
             FI    ++            +  +R+L R  S +    K+L + +I  E+       +
Sbjct: 132 NRFIGDYCSRYAVESYDVVKIMENDNRALGRKKSSLSVLFKFLYRDEIVKENITDGFNPI 191

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLH---TSHETKWID---ARNSAILYLLYGCGLRI 170
           R  K+     + L   +   ++D V      T  E K+ +    R+ AIL L    GLR+
Sbjct: 192 RLPKQEPDAIKRLEIDEVALMLDAVDSGEHFTESEKKYWEKTKLRDKAILVLFVTYGLRL 251

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP---FDLNLNIQL 227
           SE   L   +   ++   RI  K  K  ++P+  +    I +Y +        L+   + 
Sbjct: 252 SELEQLNLSSFNFNRGEFRIYRKRGKEVLMPINKTCEIVIKDYVENERTSSELLDDENKD 311

Query: 228 PLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPL--STTAHTLRHSFATHLLSNGGDLRSIQ 284
            LF  ++ K +     +  +++     LG       + H LR + AT L+  G  +  +Q
Sbjct: 312 ALFLSLQNKRMTTRAIRNLVKKYTAIVLGTTKENGYSPHKLRATAATSLIQQGFSIYDVQ 371

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           ++L H  ++TTQ+Y      +  +   EI    
Sbjct: 372 NLLDHDNVTTTQLYA----AHKKNVKREIVKNF 400


>gi|94442304|dbj|BAE93651.1| integron integrase [uncultured bacterium]
          Length = 238

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 65/241 (26%), Positives = 98/241 (40%), Gaps = 50/241 (20%)

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
           FL     R+   +   +     KK   L   L+  +A  +++            +     
Sbjct: 10  FLHDHVLRQPIQQ--PIRPVMAKKPVRLLVVLSRTEAKQVLEQ-----------LTGVPL 56

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVR--------- 207
            I  LLYG GLR++E+L L  Q+I   Q+ + I+ GKG K R+  L  S++         
Sbjct: 57  LITQLLYGAGLRLNESLRLRVQDIDFTQNQILIRDGKGAKDRVTILPQSLQPPLQEHLRR 116

Query: 208 ---------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                                       A  E+     F  +   + P    +R   L+ 
Sbjct: 117 VRILHDQDLEAGYGAVYLPDALARKIPNAAREWPWQWVFPASRISKDPRTGILRRHHLDS 176

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            V Q+ +R   R   +P   T H  RHSFATHLL  G D+R++Q +LGH  + TT IYT+
Sbjct: 177 SVVQKAVRDAARRADIPKRVTPHVFRHSFATHLLEAGYDIRTVQELLGHKDVRTTMIYTH 236

Query: 301 V 301
           V
Sbjct: 237 V 237


>gi|329964322|ref|ZP_08301403.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328525371|gb|EGF52419.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 412

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 61/287 (21%), Positives = 115/287 (40%), Gaps = 25/287 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSLKR 90
           S  TL +Y     +   F++     K++     QL+   IR F       + +G ++++ 
Sbjct: 133 SHRTLPNYLYTRNRLADFVSGRF--KVSDLAFCQLNEQFIREFQEFVVIEKGLGVQTVRH 190

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L+ +K   +   K   + +    + +  K+  + PRAL+++    + D  L     E  
Sbjct: 191 YLAILKKICRIAFKEGYSDKYYFEHYKLPKQKETAPRALSKEDFEKIRDIELTGCRPEHS 250

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRI---QGKGDKIRIVPLLPSV 206
            +      +       G    + +++TP N   DD   L +   +GK  ++  V LLP  
Sbjct: 251 IV----RDMFLFACYAGTSYVDVVAITPDNLSRDDNGALWLKYRRGKNGQLSRVKLLPEA 306

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              I +Y D          +  LF  I          +  +  ++    +    + H  R
Sbjct: 307 VALIEKYRD--------ETRATLFPVIPY-----QTLKWCLTSIKIKADIKGRLSYHMGR 353

Query: 267 HSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           HSF+T + L NG  + ++  +LGH  + TTQ+Y  V  K   + M +
Sbjct: 354 HSFSTLMTLENGVPIETVSKMLGHADIRTTQVYARVTPKKLFEDMDK 400


>gi|315638502|ref|ZP_07893679.1| phage integrase family site-specific recombinase [Campylobacter
           upsaliensis JV21]
 gi|315481493|gb|EFU72120.1| phage integrase family site-specific recombinase [Campylobacter
           upsaliensis JV21]
          Length = 355

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 68/283 (24%), Positives = 126/283 (44%), Gaps = 24/283 (8%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y    ++   +L FY      + +++Q+    I   ++   T  + D S K     +
Sbjct: 74  VSTYFNPLKKLFDYLTFYK-----LHSLKQIDEALIVEILASI-TGALSDASKKNYRIAV 127

Query: 96  KSFLKYLKKRKITTESNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTSH 147
            +F  +L ++        +   NLK        +   LP  ++E +    ++ V    + 
Sbjct: 128 MNFFDFLNRQNEEDSKAHIFDINLKNWAGVSGARGIKLPEFMSEDELKKFLEAVD---NA 184

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPS 205
           + K    RN  I+ ++   G+R+SEAL +  ++I ++     +RI  KG+K R+V +   
Sbjct: 185 DFKANTIRNKLIIKIIIFTGIRVSEALHIKLKDISEEDGLYHIRIHAKGNKYRLVMIKKE 244

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHT 264
           +   +L+   +      L+    LF   +G PL      R + Q+    G+      AH 
Sbjct: 245 LISTLLDNVKINY----LSQDSLLFVNKKGTPLTQAYVSRIVEQILFKAGIRKQKNGAHM 300

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           LRH+FAT L     DL  +Q  LGH  L+T++IYT+ +S+   
Sbjct: 301 LRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDSEKLK 343


>gi|116512034|ref|YP_809250.1| site-specific tyrosine recombinase XerS [Lactococcus lactis subsp.
           cremoris SK11]
 gi|122940166|sp|Q02YZ4|XERS_LACLS RecName: Full=Tyrosine recombinase xerS
 gi|116107688|gb|ABJ72828.1| tyrosine recombinase XerC subunit [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 356

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 56/323 (17%), Positives = 127/323 (39%), Gaps = 45/323 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKI------TIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  +  +F  +L       +      ++  +  L+  ++ +FI   R +   
Sbjct: 33  YSLNTLYEYLKEYERFFSWLVDSGVADVDKITDVSLSVLENLTKRDLESFILYLRERPRL 92

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTE-------SNILNMRNLKKSNSLP- 126
                   +   ++ R+LS + S  KYL +     +       + +  ++  KKS +L  
Sbjct: 93  NTHSTRYGVSQTTINRTLSALSSLYKYLTEEVENEDGEPYFYRNVMKKVQTKKKSETLAS 152

Query: 127 -------RALNEKQALTLVDNV-------LLHTSHETKWID-ARNSAILYLLYGCGLRIS 171
                  +     +    +D +       L + +H + + +  R+ AI+ L+   G+R+S
Sbjct: 153 RAENIKGKLFLGDETQGFLDYIDSEYEKTLSNRAHSSFFKNKERDLAIIALILASGIRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLF 230
           EA+++  +++  +   + +  KG K   VP  P  +     Y ++         +    F
Sbjct: 213 EAVNVDLRDLNLNTMIVEVTRKGGKRDAVPFAPFAKTYFERYLEVRSQRYKTTAKDTAFF 272

Query: 231 RGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
             +       ++P   ++ + +  +     +  T H LRH+ AT L +       + + L
Sbjct: 273 VTLYRDIASRIDPSSVEKLVAKYSQA--FKVRVTPHKLRHTLATRLYAQTNSQVLVSNQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH     T +YT++ ++   + +
Sbjct: 331 GHASTQVTDLYTHIINEEQKNAL 353


>gi|159904961|ref|YP_001548623.1| integrase family protein [Methanococcus maripaludis C6]
 gi|159886454|gb|ABX01391.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 295

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 57/302 (18%), Positives = 120/302 (39%), Gaps = 27/302 (8%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + L+   G S+ T++ Y+   + F+ +           +T   ++  +   F +      
Sbjct: 11  KFLKFHSGHSQNTVKYYKSGLKAFMRYFDEN-------KTWENITIEDAINFYNGYNKTG 63

Query: 83  IGDR----SLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTL 137
            G      +  + L+ +  F ++  + +   ++ I   ++ LK        L+EKQ  T+
Sbjct: 64  DGRAVNKNTKIKRLNDVNRFYEWAVEHQFLFKNPIKTFVKTLKFEKKERINLSEKQVATV 123

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDK 196
           +           K ++         L   G+RISE  ++   ++  +  ++ I+ GKG K
Sbjct: 124 L----------AKVMNYDYYVYTLFLLKTGVRISEFQNILFNDVDLEDRSIYIRDGKGGK 173

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR--YL 254
            R V +   +   + +Y      +LNL      F   +GK +      ++   L+     
Sbjct: 174 DRYVFIDNELLNHLKKYIAYR-ENLNLKTDC-FFVTEQGKKVTNYAIDKFRDYLKEVTKD 231

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            +P   T H  RH+F T    +  +L  +  I+GH  L+TT  Y + N ++     + + 
Sbjct: 232 KIPFDVTPHVFRHTFGTLACEDEMNLIVLSKIMGHSNLNTTSGYVHSNKESRKKEYLRVM 291

Query: 315 DQ 316
           + 
Sbjct: 292 NN 293


>gi|320353544|ref|YP_004194883.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320122046|gb|ADW17592.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 311

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 60/275 (21%), Positives = 114/275 (41%), Gaps = 13/275 (4%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
           + +T++    +          ++++ ++  +I A+   R  Q +G  S+ + LS +    
Sbjct: 44  KRNTQRLDQEIGGRLIRYFDGKSLQTITSKDIAAYRDYRLQQ-VGPSSVIQDLSFLSCMY 102

Query: 100 KYLKKR-KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           +  +    +        +R      +    L  KQ  TL+D   +  S +          
Sbjct: 103 RMARIEWGLDVNDPGAEIRRPSAPKNRLSLLTPKQIDTLLDYCCVSKSEKL-------YC 155

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
            + LL    +R SE   L    ++  Q  + +       R VP+  ++RK + E   +  
Sbjct: 156 YVLLLLHTAMRPSEGAGLRWDQVLIGQGMIDLTETKTDPRRVPMTRTIRK-MFERMRVAG 214

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
              N  + LP  +G R +P     F+R      RY G+  + T + LRHS A++L+ NG 
Sbjct: 215 EGENGFVFLPPGKGYRDQP--HRYFRRSFDNACRYAGI-CNFTLYGLRHSAASYLIMNGV 271

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           D+R++  I+GH  +S T  YT+    +    +  I
Sbjct: 272 DIRTVAEIMGHRNISQTMKYTHFLDDHKLSAIGAI 306


>gi|288561589|ref|YP_003428995.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4]
 gi|288548221|gb|ADC52103.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4]
          Length = 368

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 66/355 (18%), Positives = 138/355 (38%), Gaps = 54/355 (15%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYTEEKI 58
           +L + +   +++   + L         S LTL +Y  D ++FL +L           + +
Sbjct: 15  DLMDKMPPYIIEYLDSRLDY------RSSLTLFNYARDYQEFLNWLISEGISEAKDIKDV 68

Query: 59  TIQTIRQLSYTEIRAFISKRRTQKI------------GDRSLKRSLSGIKSFLKYLKKRK 106
           +++T+  LS  E +AF      +K              ++++ R  S ++S  KYL    
Sbjct: 69  SVETLANLSLQEAQAFFKTMLRRKYLVSKKSEEYKQVQEKTVNRMKSALRSLFKYLTVEA 128

Query: 107 ITTESNILNMRNLKKSNSLPRAL-NEKQALTLVDNVLLHTSHETKWIDA----------- 154
                     RN+ +   + + + +  +    + + +   + +  ++             
Sbjct: 129 EAENHEPYFHRNVMQKIPVHKVIESRSERAANMTSKIFVDNADADFLHYVQKEYEQTLTK 188

Query: 155 -----------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
                      R+ AIL L  G G+R++E  +L   ++   Q  +R+  KG+K   V ++
Sbjct: 189 GQTRYFKRDKERDFAILSLFLGSGIRLNELSNLKLGDVDFTQRLIRVIRKGNKKDSVTVI 248

Query: 204 PSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPL 258
           P   + +  Y ++     N +      +F         PL+    Q+ I +         
Sbjct: 249 PEALEDLEAYLEIRNERYNADSDPNAYVFITKGKNGYSPLSNRAIQKIIAKYTE--SYDK 306

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             + H LRH++AT+L    GD+  + + LGH    T+ +Y N + +       E+
Sbjct: 307 RMSPHKLRHTYATNLAEQTGDIPLVMTQLGHSSPETSLLYINTSLEKAKKAAEEM 361


>gi|134046324|ref|YP_001097809.1| phage integrase family protein [Methanococcus maripaludis C5]
 gi|132663949|gb|ABO35595.1| phage integrase family protein [Methanococcus maripaludis C5]
          Length = 295

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 54/301 (17%), Positives = 121/301 (40%), Gaps = 25/301 (8%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + L+   G S+ T++ Y+   + F+ +           +T   ++  +   F +      
Sbjct: 11  KFLKFHSGHSQNTVKYYKSGLKAFMRYFDEN-------KTWENITIEDAINFYNGYNKTG 63

Query: 83  IGDR----SLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTL 137
            G      +  + L+ +  F ++  + +   ++ +   ++ LK        L+EKQ  T+
Sbjct: 64  DGRAVNKNTKIKRLNDVNRFYEWAVEHQFLFKNPVKTFVKTLKFEKKERINLSEKQVATV 123

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDK 196
           +           K ++         L   G+RISE  ++   ++  +  ++ I+ GKG K
Sbjct: 124 L----------AKVMNYDYYVYTLFLLKTGVRISEFQNILFNDVDLEDRSIYIRDGKGGK 173

Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R V +   +   + +Y       +L  N      +G +        F+ Y++++ +   
Sbjct: 174 DRYVFIDNELLNHLKKYIAYRENLNLKTNCFFVTEQGKKVTNYAIDKFREYLKEVTKD-K 232

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +P   T H  RH+F T    +  +L  +  I+GH  L+TT  Y + N ++     + + +
Sbjct: 233 IPFDVTPHVFRHTFGTLACEDEMNLIVLSKIMGHSNLNTTSGYVHSNKESRKKEYLRVMN 292

Query: 316 Q 316
            
Sbjct: 293 N 293


>gi|302336436|ref|YP_003801643.1| integrase family protein [Olsenella uli DSM 7084]
 gi|301320276|gb|ADK68763.1| integrase family protein [Olsenella uli DSM 7084]
          Length = 268

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 54/297 (18%), Positives = 112/297 (37%), Gaps = 35/297 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q + Q+L  E GLS  T++SY      F        EE              + A+   
Sbjct: 3   YQEFEQHLRRE-GLSSNTVESYLWTVEYFHANYDGLCEEN-------------LLAYKGY 48

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                   +++   +  +  +L +L  + +      + +  +++   L      +  ++ 
Sbjct: 49  LMEY-FKPKTVNLRIQAMNKYLDFLGLQHLR-----VRVVKIQQKPFL------ENVISN 96

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            D   L T  +          +++ L   G R+SE + L  +++  ++    I  KG K+
Sbjct: 97  SDYRFLKTCLKDAGNYQW-YFVVWFLGATGARVSELIKLKVEHV--EEGHFDIYSKGGKL 153

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R + +   +R+  L +               LF    GK + P    + +++  R  G+ 
Sbjct: 154 RRLYIPKKLREEALSWLRER-----GRKSGYLFVNRYGKTITPRGISQQLKKYARKYGIE 208

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            S    H+ RH FA + L    D+  +  ++GH  + TT+IY    +    + +  +
Sbjct: 209 ESVVYPHSFRHLFAKNFLERYNDIALLADLMGHESIETTRIYLRRTASEQREIVDRV 265


>gi|291295938|ref|YP_003507336.1| integrase family protein [Meiothermus ruber DSM 1279]
 gi|290470897|gb|ADD28316.1| integrase family protein [Meiothermus ruber DSM 1279]
          Length = 339

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 123/288 (42%), Gaps = 25/288 (8%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR----------T 80
           LS  TL++Y    R +L +    T+       I + S  ++  +I+  +           
Sbjct: 48  LSPRTLENYRLAVRDYLAWAWSETQS----LEILKASSDDLDRYIAHLQLYGGNLEPGER 103

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q++   S+   L+G+++F + L+         + + R+         AL E     L+D+
Sbjct: 104 QRLKPGSIATYLAGVRAFYRALEWANAAKLPQVHSPRDPTPPEERRPALPEDLYKKLLDH 163

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRI 199
           +        +     +   + L+   GLRISE ++L+  ++   +  L ++ GKG K R 
Sbjct: 164 LSGADPEHRR-----DRLAVRLMAEAGLRISEVINLSLDDLSLAERLLLVRAGKGGKQRT 218

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLF----RGIRGKPLNPGVFQRYIRQLRRYLG 255
           VPL  S+ + I ++  L       N Q  L     R   G+ +     +R + Q  R LG
Sbjct: 219 VPLSKSLAQEIQDWLKLRLAHAAPNEQSLLINLGGRKAYGRAMTDKSLRRILNQHYRDLG 278

Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            P     AH LRH+  T +     DL +   +LGH  ++T+ IY  ++
Sbjct: 279 FPKRYYGAHMLRHTAGTRIYKKSRDLHATARLLGHANVNTSAIYAKMD 326


>gi|56475685|ref|YP_157274.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|58616517|ref|YP_195646.1| putative integrase [Azoarcus sp. EbN1]
 gi|58616533|ref|YP_195662.1| putative integrase [Azoarcus sp. EbN1]
 gi|56311728|emb|CAI06373.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|56315979|emb|CAI10622.1| putative integrase [Aromatoleum aromaticum EbN1]
 gi|56315995|emb|CAI10638.1| putative integrase [Aromatoleum aromaticum EbN1]
          Length = 412

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 120/293 (40%), Gaps = 14/293 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q++ Q L   RGL+  T+ +Y    R+FL     + EE  T   + +L+ +++  F+  
Sbjct: 120 VQDYAQYLCEARGLATATIINYVPFVREFLK--QQFGEEGAT---LSRLNASDVVRFVQG 174

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQAL 135
           +  + +  +  K   + ++SFL+Y + R   T      +  +      S+PRA+  ++  
Sbjct: 175 QVPR-LHLKRAKLMTTALRSFLRYARYRGDVTRDLAAAVPVVANWSMTSIPRAIAAEEVR 233

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+      +    +    R+ AIL LL   GLR  E   L   +I  +   L ++GKG 
Sbjct: 234 QLL-----GSIDRDQPTGRRDYAILLLLARLGLRSGEVAFLELDDIDWNAGQLHVRGKGG 288

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           +    PL   V +AI+ Y                 R               +R      G
Sbjct: 289 QRNEFPLPVEVGEAIVAYLHSGRPRSASRRVFLRTRAPNRGFQGACGVCSLVRHAIERAG 348

Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +   T  AH  RH  AT +L  G  L  I  +LGH    TT+IYT V+ +   
Sbjct: 349 IHAPTRGAHQFRHGLATEMLRQGASLGEIGELLGHRHPQTTKIYTKVDLEALR 401


>gi|311110709|ref|ZP_07712106.1| site-specific recombinase, phage integrase family [Lactobacillus
           gasseri MV-22]
 gi|311065863|gb|EFQ46203.1| site-specific recombinase, phage integrase family [Lactobacillus
           gasseri MV-22]
          Length = 343

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 61/321 (19%), Positives = 121/321 (37%), Gaps = 41/321 (12%)

Query: 32  SKLTLQSYECDTRQFLIFLAFY------TEEKITIQTIRQLSYTEIRAFISKRRTQKI-- 83
           S  T   Y  + R+F  +L         + ++I + T+  +   ++  +I   +  K   
Sbjct: 18  SLTTTYQYLTEIRRFFDWLRQNKISTASSNKEIELSTLEGMQRNDVMLYIHYLKHTKNQQ 77

Query: 84  ----GDRSLKRSLSGIKSFLKY-------LKKRKITTESNILNMRNLKKSNSL---PRAL 129
                  ++ RS++ ++S  K+                + +L + +L  + +L      L
Sbjct: 78  GRLNSPTTINRSINALRSLYKFLTITSDNNHGEPYFDRNVMLKIDSLNDTKTLNYRAHVL 137

Query: 130 N--------EKQALTLVDNVLLHTSHET-----KWIDARNSAILYLLYGCGLRISEALSL 176
                    + Q L  ++N   H  ++      K    R+ AI+ L+ G G+R+SE + +
Sbjct: 138 ESHMYMGDLKYQFLDFIENEYEHKCNKQSLPSFKKNHERDIAIIALILGTGIRVSECVGV 197

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
             +NI      L +  KG +   VP+       + +Y  +     + N     F   R  
Sbjct: 198 NVRNINLKDEMLDVVRKGGQKDSVPIADWTIPYLKKYQKIRTDRYHANKNDIAFFLTRWH 257

Query: 237 ----PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                +     ++ + +     G     T H LRH+ A+ L     D   +   LG    
Sbjct: 258 GKTRRMTANAVEKMVNKYSAAFG--KPLTPHKLRHTLASELYEVTKDQVLVAQQLGQKGT 315

Query: 293 STTQIYTNVNSKNGGDWMMEI 313
           + T +YT+V+ K   D + +I
Sbjct: 316 TATDLYTHVDQKKQKDALNKI 336


>gi|168213629|ref|ZP_02639254.1| phage integrase [Clostridium perfringens CPE str. F4969]
 gi|170714780|gb|EDT26962.1| phage integrase [Clostridium perfringens CPE str. F4969]
          Length = 400

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 71/339 (20%), Positives = 131/339 (38%), Gaps = 46/339 (13%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP      L +    WL    I   L   + + YE   R ++ F +    + I ++T   
Sbjct: 70  LPTDDKITLSQWFYTWLFTYRIHD-LKPSSFERYEGLYRNYIEFSSLGKIKLIDLRT--- 125

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
                I+A+ +     +     ++K     +KS L    K    T++    +   K   +
Sbjct: 126 ---HHIQAYYNSLVAEKGKSPSTIKTINKCLKSCLNQALKEGYITKNYCTLITLPKGPET 182

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
               +N     TL +      +   + ++ +N  +  L  G GLR+ E L+L   +I   
Sbjct: 183 SKETIN---IFTLEE----QQTFMRECMNNKNGMLYILALGTGLRLGEILALKWTDINFK 235

Query: 185 QSTLRIQG------------------------KGDKIRIVPLLPSVRKAILEYYDLCPFD 220
            + + I                            + IR VPL  ++ + + ++      D
Sbjct: 236 NNYIDINKAIKSTYKIDSKGNREFQIIEQQPKTKNSIRTVPLNNNLIELLQQHRKKQMID 295

Query: 221 LNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
            + NI++      +F    G  LN    ++  +++ +   L      H LRH+FAT L  
Sbjct: 296 RDSNIEIYFDNNLVFSTPIGNYLNESNVRKTFKRILKKCNL-KELRFHDLRHTFATRLFE 354

Query: 276 NGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           NG   +++Q+ILGH  +STT  IYT+V        + ++
Sbjct: 355 NGVPPKTVQTILGHSDISTTLNIYTHVMKDTKDKAIDKL 393


>gi|116621638|ref|YP_823794.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116224800|gb|ABJ83509.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 710

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 75/320 (23%), Positives = 134/320 (41%), Gaps = 17/320 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E++     WL ++    GLSK TL+      R F+ +L     ++    ++ ++   +I 
Sbjct: 400 EVIDGYGRWLVDIH---GLSKGTLRKNGDAARVFVQWLG----DRANRDSLSRIGLADID 452

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNLKKSNSLPRALN 130
            ++S R    +   +       ++SFL+YL   K   +    +++   + K   +PRA  
Sbjct: 453 QYLSWRMP-GLRRATRHGVSQCLRSFLRYLHAEKFVAKDLSPVVSGPIMYKFEDIPRAFT 511

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           E Q   L++     T  +      R+ AIL LL   GLR  E + L   +I      LR+
Sbjct: 512 EPQVKALLET----TRQDKTPTGLRDHAILMLLSTYGLRAGEVVRLRLDDIDWRADRLRV 567

Query: 191 Q-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           +  K      +PLLP V +A+L Y        ++       R   G     G     I++
Sbjct: 568 RQSKSGAGSFLPLLPPVGEALLNYLRRGRPQTDIREVFLRVRAPHGAFPWGGSLHTIIQR 627

Query: 250 LRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
             +  G+ +     AH  R + A  LL     L+SI  +LGH    +T+IY  + +++  
Sbjct: 628 RLKQAGIQVKGRHGAHAFRFARAGSLLEADVPLKSIGDLLGHRSAESTEIYLRLATEDLR 687

Query: 308 DWMMEIYDQTHPSITQKDKK 327
              +++  +  P    + KK
Sbjct: 688 AISIDLPGKGEPCQIGRTKK 707


>gi|158317270|ref|YP_001509778.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158112675|gb|ABW14872.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 477

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 62/315 (19%), Positives = 116/315 (36%), Gaps = 40/315 (12%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            WL  ++   G    TL++Y          +  +    I    + +L+  ++R  ++  +
Sbjct: 158 EWLD-IKEGDGTRASTLRAYR-------WLINMHIVPVIGRVQLDKLTPLDVRRLVASAK 209

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +   S++   S I++ L   ++  +   +    ++     +   RAL  ++A  LV+
Sbjct: 210 KSGLSAGSVRHVHSLIRNALAEAERLDLVARNVAKAVKAPPTPHREVRALRPEEARRLVE 269

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------- 191
            +             R  A+       GLR  E L L   ++  D +TL ++        
Sbjct: 270 VLR----------GERLEAVFACGLMLGLRRGEILGLRWSDVDLDGATLHVRQTLQRVDG 319

Query: 192 -------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLN 239
                        R +P+ P +   +  +      +             +F    G PL 
Sbjct: 320 SLMFVPAKTERSHRRLPIPPKLVTILRRHRATQTAERTGLGDAWTETGLVFTSSIGTPLE 379

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IY 298
           P    R    LRR  GLP     H LRH+FA+ L + G   R++  +LGH  +  T   Y
Sbjct: 380 PRNVNRRFDVLRRQAGLPW-LRLHDLRHAFASMLFAEGVPARTVMELLGHSTIQLTMNTY 438

Query: 299 TNVNSKNGGDWMMEI 313
           T+V  +   D +  +
Sbjct: 439 THVMPETQRDAVGRL 453


>gi|238018829|ref|ZP_04599255.1| hypothetical protein VEIDISOL_00689 [Veillonella dispar ATCC 17748]
 gi|237864595|gb|EEP65885.1| hypothetical protein VEIDISOL_00689 [Veillonella dispar ATCC 17748]
          Length = 357

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 123/320 (38%), Gaps = 46/320 (14%)

Query: 19  QNWLQN---LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           + W +    L+ +  +S+ TL SY+   + +++         I    + +LS   +RA +
Sbjct: 55  ERWCEYWIRLKTD-TVSQNTLSSYQYIIKTYIVPF-------IGSIRLVELSALNVRALM 106

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-PRALNEKQA 134
                  +  R++  +L+ +++ LK     +I +++    ++  K+        L++++ 
Sbjct: 107 DSM--SHLSARTISYTLTVLRAILKQAVMDEIISKNVATLVKKPKQERKREMVTLSKEEV 164

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--- 191
            T ++ +      + +W      A+  L +  GLR SE L LT  ++   Q TL +    
Sbjct: 165 ETFLEQI-----DDVEW-----HALFKLAFTTGLRRSEILGLTWDDVNLKQKTLTVNQTV 214

Query: 192 -------------GKGDKIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIR 234
                              R + L       +L+             N      +F G  
Sbjct: 215 LRIDEVTTISKTTKNSSSRRSISLDDKTIAELLKLRTCVDKRRLKAPNWRNNNLVFPGKF 274

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G P +P       ++    +G P   T H  RH+ AT LL  G + + +Q  LGH     
Sbjct: 275 GNPRDPAKVSLKCKKFATAIGRP-DFTMHDTRHTHATLLLEAGVNFKVVQMRLGHSSYQQ 333

Query: 295 TQ-IYTNVNSKNGGDWMMEI 313
           T   Y++V      D + +I
Sbjct: 334 TMDTYSHVTPIMEADVVEKI 353


>gi|238854267|ref|ZP_04644611.1| site-specific tyrosine recombinase XerS [Lactobacillus gasseri
           202-4]
 gi|238833078|gb|EEQ25371.1| site-specific tyrosine recombinase XerS [Lactobacillus gasseri
           202-4]
          Length = 356

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 66/352 (18%), Positives = 133/352 (37%), Gaps = 42/352 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY------T 54
           ME N    ++  EL     ++++   +    S  T   Y  + R+F  +L         +
Sbjct: 1   METNRYLTLIKQEL-ANMPDFVKEYNLGTSHSLTTTYQYLTEIRRFFDWLRQNKISTASS 59

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKI------GDRSLKRSLSGIKSFLKY------- 101
            ++I + T+  +   ++  +I   +  K          ++ RS++ ++S  K+       
Sbjct: 60  NKEIELSTLEGMQRNDVMLYIHYLKHTKNQQRRLNSPTTINRSINALRSLYKFLTITSDN 119

Query: 102 LKKRKITTESNILNMRNLKKSNSL---PRALN--------EKQALTLVDNVLLHTSHET- 149
                    + +L + +L  + +L      L         + Q L  ++N   H  ++  
Sbjct: 120 NHGEPYFDRNVMLKIDSLNDTKTLNYRAHVLESHMYMGDLKYQFLDFIENEYEHKCNKQS 179

Query: 150 ----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
               K    R+ AI+ L+ G G+R+SE + +  +NI      L +  KG +   VP+   
Sbjct: 180 LPSFKKNHERDIAIIALILGTGIRVSECVGVNVRNINLKDEMLDVVRKGGQKDSVPIADW 239

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLSTT 261
               + +Y  +     + N     F   R       +     ++ + +     G     T
Sbjct: 240 TIPYLKKYQKIRTDRYHANKNDIAFFLTRWHGKTRRMTANAVEKMVNKYSAAFG--KPLT 297

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            H LRH+ A+ L     D   +   LG    + T +YT+V+ K   D + +I
Sbjct: 298 PHKLRHTLASELYEVTKDQVLVAQQLGQKGTTATDLYTHVDQKKQKDALNKI 349


>gi|237725482|ref|ZP_04555963.1| integrase [Bacteroides sp. D4]
 gi|229436169|gb|EEO46246.1| integrase [Bacteroides dorei 5_1_36/D4]
          Length = 383

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 57/316 (18%), Positives = 118/316 (37%), Gaps = 45/316 (14%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEK-------------------ITIQTIRQLSY 68
           E+G+S  TL+       + L   A + E+                         IR L  
Sbjct: 81  EKGVSNATLRG-RIKLSELLDLYARWLEDNGKKSSIRGVNSIRKATFQFRGDVPIRMLDK 139

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLS---------GIKSFLKYLKKRKITTESNILNMRNL 119
               AF++  R      R+  R++S          + + L +  +    +E+   ++   
Sbjct: 140 DYCMAFMNFLRND-YKART-NRTISMTTATGYVTVLSAMLNWAVRNDYLSENPFTHIAA- 196

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
             ++ + R  ++++ L + +   L  +        + + +      C LRIS+ + LT  
Sbjct: 197 --ADRIHRPESKREFLQIDELKKLIATECPTRPAVKQAFLFSC--YCALRISDVIGLTWG 252

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           +I  D    R+    +K      LP  ++A+ ++        + +    L         +
Sbjct: 253 DIHKDGDQWRVFTVMEKTNDPIYLPLSKQAM-KWLPERGDAKDEDKVFDLP--------S 303

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                  + +  +  G+    T H  RH+FAT +L+   D+ +   +LGH  +STTQIY 
Sbjct: 304 ESRICIILDKWAKAAGINKHVTYHVSRHTFATMMLTLDVDIYTTSKLLGHKNISTTQIYA 363

Query: 300 NVNSKNGGDWMMEIYD 315
            +  +   + +  + D
Sbjct: 364 KIIDQKKDEAVNRVND 379


>gi|153953104|ref|YP_001393869.1| recombinase [Clostridium kluyveri DSM 555]
 gi|146345985|gb|EDK32521.1| Predicted recombinase [Clostridium kluyveri DSM 555]
          Length = 321

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 65/311 (20%), Positives = 118/311 (37%), Gaps = 26/311 (8%)

Query: 18  RQNWLQNLEI--ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           ++ + + + I   RGLS+ T+++Y    + F  FL          +    L    I +++
Sbjct: 24  QEAFKEYIAISKVRGLSEDTIKTYYYHNKYFCEFLGKN-------KNCGGLDVKTIESYV 76

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
              + + +   ++   L  I   LKY  K+    E    N+  +K          E +  
Sbjct: 77  LFLQEKGMKGTTINSYLQNISPVLKYCMKKGYIFEY--FNIPYVKVQQEHKEIFTEDELN 134

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKG 194
           TL+            ++  R    ++LL   GLR SE   L   N+      +     K 
Sbjct: 135 TLL-----QPPKSKDFVSIRVYTCVWLLASTGLRASELRHLKVNNLNMIDRIITCNYTKN 189

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K R +P+  S+ + +  Y +L   D     +  LF  + G  L+    Q+ I +     
Sbjct: 190 KKARYLPISSSLYEVLDNYLNLRKGD----GEDYLFPTVYGDILSRTSLQKGIVKYCHQR 245

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+  S   H  RH+F T  +        +++I GH        Y N    +    M+E+ 
Sbjct: 246 GIKKS-GIHIYRHTFITRSVEKNVSPLILKNITGHATFKQLNNYYN----SRMSSMVEVI 300

Query: 315 DQTHPSITQKD 325
           D   P + +K+
Sbjct: 301 DNIAPQLNKKE 311


>gi|319425166|gb|ADV53240.1| integrase family protein [Shewanella putrefaciens 200]
          Length = 311

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 122/299 (40%), Gaps = 23/299 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L I    S+ ++ S      + + +     ++K+     +Q    +IRA ++    
Sbjct: 10  YLSRLSIN---SQRSISSQMRSIARLMQWQEDCLDDKLCQIDYQQ--ALQIRAMMTH--- 61

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPRALNEKQALTL 137
            +   RS+ R++  IK+ +K          S + N++ +   K        L+ +Q   +
Sbjct: 62  AQWSARSINRAMIAIKNIVKVAALMNKADLSQVANLQTINQVKHGEHQGTPLSTEQVTAV 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDK 196
           +D               RN  I  L  G GLR SE  +L   +   +  TL +  GKG+K
Sbjct: 122 LDYCKTQ----KGTFATRNLLIFSLFLGTGLRRSELSALMLSDYDANLHTLTVAAGKGNK 177

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYL 254
            R + L   V + +L +  L        +      G     +P +P    R +++    L
Sbjct: 178 SRTLFLPEWVEQNLLAWLKLRQRQQGYLVCKSTLTGKLKLSEPTSPTALYRLVKETLYEL 237

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           G+  + + H LR +F T LL    D+ +++ + GH  +STT IY     K    +M + 
Sbjct: 238 GVD-NVSPHDLRRTFITRLLEQNVDINTVRQMAGHADISTTTIY----DKRDHAFMKQA 291


>gi|288557179|ref|YP_003429246.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4]
 gi|288548473|gb|ADC52354.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4]
          Length = 368

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 72/355 (20%), Positives = 135/355 (38%), Gaps = 54/355 (15%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYTEEKI 58
           +L + +   +++   + L         S LTL +Y  D ++FL +L           +++
Sbjct: 15  DLMDKMPPYIIEYLDSRLDY------RSSLTLFNYARDYQEFLKWLISEGISDANDIKEV 68

Query: 59  TIQTIRQLSYTEIRAFISKRRTQKI------------GDRSLKRSLSGIKSFLKYLKKRK 106
           ++ T+  LS  E +AF      +K              ++++ R  S ++S  KYL    
Sbjct: 69  SVDTLANLSLQEAQAFFKTMLRRKYLVSKKSEEYKQVQEKTVNRMKSALRSLFKYLTVEA 128

Query: 107 ITTESNILNMRNLKKSNSLPRA----------LNEKQALTLVDNVLLHTSHET------- 149
                     RN+ +   + +           + EK  +   D   LH   +        
Sbjct: 129 EAENHEPYFHRNVMQKIPVHKVSESRSERAANMTEKIFIENADADFLHYVQKEYELTLTK 188

Query: 150 ------KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
                 K    R+ AIL L  G G+R++E  +L   ++   Q  +R+  KG+K   V ++
Sbjct: 189 GQMRYFKRDKERDFAILSLFLGSGIRLNELSNLKLGDVDFTQKVIRVIRKGNKKDSVTVI 248

Query: 204 PSVRKAILEYYDLCPFDLNLN--IQLPLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPL 258
           P     +  Y ++     N +      +F         PL+    Q+ I +         
Sbjct: 249 PEALDDLKTYLEIRNERYNADGDPHAYVFITKGKNGYSPLSNRAIQKIIAKYTE--SYDK 306

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             + H LRH++AT+L    GD+  + + LGH    T+ +Y N +         E+
Sbjct: 307 RMSPHKLRHTYATNLAEQTGDIPLVMTQLGHSSPETSLLYINTSLAKAKKAAEEM 361


>gi|228918658|ref|ZP_04082085.1| Integrase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228841003|gb|EEM86218.1| Integrase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 368

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 69/351 (19%), Positives = 129/351 (36%), Gaps = 47/351 (13%)

Query: 10  VSFELLKERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL-----------AFYTEE 56
              E  KE+  W  ++ +E +  LS  TL  Y  +   FL +L                 
Sbjct: 14  ARVECHKEKMPWYIIEYIEEKTNLSPATLYGYLIEYEMFLQWLISSRLATVDGKVVTEIH 73

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY-------LKKRKITT 109
           ++TI+T+  L   +++ F S    Q    +++ R+ S +KS   Y               
Sbjct: 74  EVTIETLEHLPLKQVKRFKSYLERQGNKTKAVIRTFSALKSLFNYLTSNTEDDNGECYFY 133

Query: 110 ESNILNMRNLKKSN--------------------SLPRALNEKQALTLVDNVLLHTSHET 149
            + +  M   K+                         R L+  +   ++           
Sbjct: 134 RNVMAKMEIHKEKIDAAARAKEISEVIFHNNDDIKFMRFLS-NEYEQMLQENAPGKLRFF 192

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           +    R+ AIL L+ G GLR+SEA SLT  +I      +++  KGDK   +    +    
Sbjct: 193 RRDKERDIAILSLILGTGLRVSEAASLTISSINFRTRYIKVVRKGDKKSSILATQTALDD 252

Query: 210 ILEYYDLCPFDLN-LNIQLPLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           + EY  +          +  LF          ++    Q+   +  +        + H L
Sbjct: 253 VQEYLKVRAVRYKCPEDEDILFVTNYKGSYAQISVNAIQKLTEKYTKA--FDEKKSPHKL 310

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           RH++AT+  +   DL  + + +GH  + TT +YTN++     + +  +  +
Sbjct: 311 RHTYATNHYNENKDLVLLANQMGHNSMETTSLYTNIDDSKRREAIERLEKR 361


>gi|237714827|ref|ZP_04545308.1| site-specific recombinase [Bacteroides sp. D1]
 gi|262406900|ref|ZP_06083449.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646188|ref|ZP_06723843.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294810609|ref|ZP_06769260.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229445152|gb|EEO50943.1| site-specific recombinase [Bacteroides sp. D1]
 gi|262355603|gb|EEZ04694.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638483|gb|EFF56846.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294442202|gb|EFG11018.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 397

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 59/310 (19%), Positives = 118/310 (38%), Gaps = 45/310 (14%)

Query: 20  NWLQNLEI---ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           ++L N+     ERG S      YE      +  L  +  + I     R +    + +F+ 
Sbjct: 106 DYLMNMRSQSKERG-SLN----YEKTVGNTIRELKLFRGDYI---AFRDIDKDFLNSFVD 157

Query: 77  KRRTQK-------------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM---RNLK 120
             +  K             + + S+      +++ +    K  I T +          +K
Sbjct: 158 FLKQAKKASKFGLLKAGGVLSNNSVIAYYGVLRTAINRAYKEGIITVNPTKEFDFASKVK 217

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
              S    L  ++   L+         E K+   + + +   L  CGLR+S+   L   +
Sbjct: 218 AEVSRREYLTIEELKRLI-------GTECKYEIMKQAFLFSCL--CGLRVSDIRKLKWND 268

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           +      +RI+ K  K +    LP   +A+ ++          ++  PL         + 
Sbjct: 269 LQKSGERIRIEIKMQKTKEPLYLPISDEAL-KWLPQQNEAKGDDLIFPL--------THE 319

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           G   + +++  +  G+    + H  RH+ AT +L+ G DL ++  +LGH  ++TTQIY  
Sbjct: 320 GTINKILQKWAKDAGIIKHISFHVARHTHATMMLTLGADLYTVSKLLGHKNIATTQIYAK 379

Query: 301 VNSKNGGDWM 310
           +  K   + +
Sbjct: 380 IVDKKKEEAI 389


>gi|310830775|ref|YP_003965876.1| hypothetical protein PPSC2_p0418 [Paenibacillus polymyxa SC2]
 gi|309250242|gb|ADO59808.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
          Length = 384

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 58/326 (17%), Positives = 117/326 (35%), Gaps = 34/326 (10%)

Query: 35  TLQSYECDTRQFLIFLAFYTE------EKITIQTIRQLSYTEIRAFISKR---------- 78
           T   Y  D   FL FL +  +      + I    + QL   ++  F              
Sbjct: 39  TRFEYAKDISLFLEFLLYSHKCDKSTIKAIEPGDLDQLEDRDLIDFFDYLSSYQTSYISN 98

Query: 79  ------RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNE 131
                 +          R L+ ++    YL ++++ ++    N+   +     + + L+ 
Sbjct: 99  TGRQVMKEFTNAPVGKARKLATLRKLFAYLFQKRMISKDITPNIEIRVPTKVKVKQRLSP 158

Query: 132 KQALTLVDNVLLHTSHETKWI-------DARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
            +       ++   S E   +         R+  +  LL   G+RISE + L   +I   
Sbjct: 159 DEVQRFFTTIMNDLSIENNRLLKFHEKVKHRDYIMTLLLAYTGVRISELVQLDISDIRLH 218

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF--DLNLNIQLPLFRGIRGKPLNPGV 242
           + T  +  KG   + + +   + + I  Y +       ++   Q  LF  +  K + P  
Sbjct: 219 KKTFVVTRKGGDEQEITMPERIIEDITAYCEHRKKLTHVDHRDQNALFISLHRKRIKPST 278

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI-YTNV 301
            +  + + R    + +  T H  R +F T+  +   D+     +LGH    TT+  Y + 
Sbjct: 279 VRALLDKYRLRSNVSIHVTPHVFRRTFGTNHYNTYEDMYLTAQVLGHASAETTRKFYADP 338

Query: 302 NSKNGGDWMMEI-YDQTHPSITQKDK 326
           + +     M +  Y QT  ++  K K
Sbjct: 339 SEERVNRSMKQFDYAQTETTLDNKGK 364


>gi|237740506|ref|ZP_04570987.1| integrase/recombinase [Fusobacterium sp. 2_1_31]
 gi|229422523|gb|EEO37570.1| integrase/recombinase [Fusobacterium sp. 2_1_31]
          Length = 328

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 62/298 (20%), Positives = 125/298 (41%), Gaps = 26/298 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTI----RQLSYTEIRAFISKR-RTQKIGDR 86
           S+ T++ Y    + FL F+ +  E   +I  +    + +   ++ A+I      +K+   
Sbjct: 33  SEKTVKDYMFHLKDFLHFV-YEGENDFSISEVIPLMQDIEKEDVEAYIVHLFEDRKLKKT 91

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL--NEKQALTLVDNVLLH 144
           S+   LS +KS  K L+   +  ++ +  ++  K + ++   L  +      ++    + 
Sbjct: 92  SVNTILSALKSLYKELESNGL--KNPVKYIKLFKVNRNIENVLKVSIDDIRKIIGLYKID 149

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR---IQGKGDKIRIVP 201
           +  +      RN  ILY L+  G+R  E L+L  ++ +  +       +Q K  K    P
Sbjct: 150 SEKK-----YRNITILYTLFYTGMRSKELLTLQFKHFLRREDEYFFKLVQTKSGKDVYKP 204

Query: 202 LLPSVRKAILEY----YDLCPFDLNLNIQLPLFRGI--RGKPLNPGVFQRYIRQLRRYLG 255
           +  S+ K + EY     ++   D     +  +F        PL+       I+ + +   
Sbjct: 205 IHKSLVKKLEEYRSYLMNMYSLDSKDLDEHYIFATSVSNNSPLSYRSLNVIIQDMGKL-- 262

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +    + H +RH+ AT L  NG D+  I+  LGH     T++Y NV S      + ++
Sbjct: 263 IEKDISPHNIRHAIATELSLNGADILEIRDFLGHSDTKVTEVYINVRSVLEKKVLEKL 320


>gi|164688222|ref|ZP_02212250.1| hypothetical protein CLOBAR_01867 [Clostridium bartlettii DSM
           16795]
 gi|164602635|gb|EDQ96100.1| hypothetical protein CLOBAR_01867 [Clostridium bartlettii DSM
           16795]
          Length = 393

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 55/315 (17%), Positives = 124/315 (39%), Gaps = 36/315 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-------EKITIQTIRQLSYTEI 71
           +++   L+    ++  T  +Y  D   F  ++   +        + +T++  + +   ++
Sbjct: 23  KDYFVYLKS--SVAVSTRAAYLEDIIFFCEYIVNESGLTDKDDMKNLTVEDFKNIKSRDV 80

Query: 72  RAFISKRRTQKIG------------DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
             F+     +               +R+L R  S I +  K+L + +    +       +
Sbjct: 81  NLFLGDYCPRYYKEREDHTFVYENNNRALARKKSSISTLFKFLYRNEQLPTNITDGFNPI 140

Query: 120 KKSNSLP---RALNEKQALTLVDNVLLHTSHETKWIDAR------NSAILYLLYGCGLRI 170
           K     P   + L+  + + ++D V        K           + AIL L    GLR+
Sbjct: 141 KLPKPQPDAIKRLDIDEVMVMLDAVESGEGLTEKEKVYWEKTKLRDKAILALFVTYGLRL 200

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP---FDLNLNIQL 227
           +E   L   +    +   +I  K  K  ++P+  +    +++Y +       DL  ++Q 
Sbjct: 201 NELRELNISSFNFSRGEFKIYRKRGKEVLMPINKTCENVVIDYINYERPKSEDLPEDVQD 260

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
            LF  ++ K L P   ++ +++              + H LR + AT L+ +G  +  ++
Sbjct: 261 ALFLSLQRKRLTPRAIRQLVKKYTSICMHTSRDKGYSPHKLRATAATSLIQSGFSIYDVK 320

Query: 285 SILGHFRLSTTQIYT 299
           ++L H  ++TTQ+Y 
Sbjct: 321 ALLDHDNVTTTQLYA 335


>gi|160937813|ref|ZP_02085172.1| hypothetical protein CLOBOL_02705 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439252|gb|EDP17005.1| hypothetical protein CLOBOL_02705 [Clostridium bolteae ATCC
           BAA-613]
          Length = 316

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 51/317 (16%), Positives = 120/317 (37%), Gaps = 33/317 (10%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P + + +  +    +  +    RG S  T+ SY    R F                 R +
Sbjct: 20  PSMYNPDNYQANLQYFHDFLQRRGSSANTIDSYLTSVRHFHSLY-------------RDV 66

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES----NILNMRNLKKS 122
           +   ++++ +    ++    ++   + GI  ++  L+     +++       ++  L + 
Sbjct: 67  TVENLQSYKAWLM-ERYKPSTVNTRIYGINQYVAALQSGGDISDTGPYTPAASIDFL-EP 124

Query: 123 NSLPRALNEKQ-----ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             LP   ++++      ++  D   L    +          ++  L   G R+SE + + 
Sbjct: 125 YKLPSVRHQQKPFLNNVISKRDYERLKRGLKRDNNMFW-YFVVRFLGATGARVSELIQIK 183

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
            +++      + +  KG K+R +     +   +L + D             +F   RG P
Sbjct: 184 AEHMQI--GCMDLYSKGGKVRRIYFPEKLCGEMLSWLDSRQIQTG-----FIFTNRRGNP 236

Query: 238 LNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           + P      ++ L +   + P +   H+ RH FA + L+   D+  +  ++GH  + TT+
Sbjct: 237 ITPRGISSQLKVLAKKYRICPDTVYPHSFRHRFAKNFLTKFNDISLLADLMGHESIETTR 296

Query: 297 IYTNVNSKNGGDWMMEI 313
           IY   +S    + +  I
Sbjct: 297 IYLTRSSDEQRELIDRI 313


>gi|222528753|ref|YP_002572635.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222455600|gb|ACM59862.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 325

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 65/285 (22%), Positives = 112/285 (39%), Gaps = 37/285 (12%)

Query: 46  FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR 105
           ++  +  + + K+    ++ LS   I+   +    + +  +++K     I S LK   K 
Sbjct: 37  YIQLINKHIKPKLGHIQLQNLSPLAIQECYNSLLLENLSPKTVKNIHVIIHSALKQAIKC 96

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
               ++    +   K      + L+ +Q  T +              D+   A L  LY 
Sbjct: 97  GYINQNVSEAVALPKVERPEIKTLSSEQVTTFLQA---------AQTDSLYPAFLLELY- 146

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQ---------------------GKGDKIRIVPLLP 204
            GLR  E L L   +I  D  T+ ++                           R++P+  
Sbjct: 147 TGLRRGELLGLKWDDIDFDNCTIHVKRSLVRVYDHNLKKTTLLLQPPKTKAGYRVIPIPD 206

Query: 205 SVRKAILEYYDLCPF----DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
            V   + E Y+          N N    +F   +G P++P  F+R  +QL +   LP + 
Sbjct: 207 FVVAELKELYEEHQRIKLSQPNFNSLNLMFVTTQGTPIDPRNFERKFKQLLKKANLP-NI 265

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
             H LRH+ AT LL      + +Q ILGH  +STT  IY++VN +
Sbjct: 266 RLHDLRHTVATLLLQQNVHPKIVQEILGHRDISTTLDIYSHVNIE 310


>gi|125624094|ref|YP_001032577.1| site-specific tyrosine recombinase XerS [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|229892067|sp|A2RKP9|XERS_LACLM RecName: Full=Tyrosine recombinase xerS
 gi|124492902|emb|CAL97863.1| tyrosine recombinase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070867|gb|ADJ60267.1| site-specific tyrosine recombinase XerS [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 356

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 54/323 (16%), Positives = 120/323 (37%), Gaps = 45/323 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKI------TIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  +  +F  +L       +      ++  +  L+  ++ +FI   R +   
Sbjct: 33  YSLNTLYEYLKEYERFFSWLVDSGVADVDKITDVSLSVLENLTKRDLESFILYLRERPRL 92

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTE-------SNILNMRNLKKSNSLP- 126
                   +   ++ R+LS + S  KYL +     +       + +  ++  KKS +L  
Sbjct: 93  NTHSTRYGVSQTTINRTLSALSSLYKYLTEEVENEDGEPYFYRNVMKKVQTKKKSETLAS 152

Query: 127 -------RALNEKQALTLVDNVLLHTSHETKWID--------ARNSAILYLLYGCGLRIS 171
                  +     +    +D +                     R+ AI+ L+   G+R+S
Sbjct: 153 RAENIKGKLFLGDETQGFLDYIDSEYEKTLSNRARSSFFKNKERDLAIIALILASGIRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLF 230
           EA+++  +++  +   + +  KG K   VP  P  +     Y ++         +    F
Sbjct: 213 EAVNVDLRDLNLNTMIVEVTRKGGKRDAVPFAPFAKTYFERYLEVRSQRYKTTAKDTAFF 272

Query: 231 RGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
             +       ++P   ++ + +  +     +  T H LRH+ AT L +       + + L
Sbjct: 273 VTLYRDIASRIDPSSVEKLVAKYSQA--FKVRVTPHKLRHTLATRLYAQTNSQVLVSNQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH     T +YT++ ++   + +
Sbjct: 331 GHASTQVTDLYTHIINEEQKNAL 353


>gi|218130593|ref|ZP_03459397.1| hypothetical protein BACEGG_02182 [Bacteroides eggerthii DSM 20697]
 gi|217986937|gb|EEC53268.1| hypothetical protein BACEGG_02182 [Bacteroides eggerthii DSM 20697]
          Length = 409

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 65/307 (21%), Positives = 124/307 (40%), Gaps = 27/307 (8%)

Query: 14  LLKERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           LLK     ++ +    G  +S  TL +Y     +   F++     K++     QL+   I
Sbjct: 110 LLKLFDRHIEEIRARVGIDVSHRTLPNYLYTRNRLADFVSSRF--KVSDLAFCQLNEQFI 167

Query: 72  RAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           R F       + +G ++++  L+ +K   +   K   + +    + +  K   + PRAL+
Sbjct: 168 REFQEYVVIEKGLGVQTVRHYLAILKKICRIAFKEGYSDKYYFEHYKLPKLKETAPRALS 227

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLR 189
           ++    + D  L     E   +      +       G    + +++T  N   DD   L 
Sbjct: 228 KEDFEKIRDIELTGCRPEHSIV----RDMFLFACYAGTSYVDVVAITLDNLSRDDNGALW 283

Query: 190 I---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           +   +GK  ++  V LLP     I +Y D        + +  LF  I          +  
Sbjct: 284 LKYRRGKNGQLSRVKLLPEAVALIEKYRD--------DTRPTLFPVIPY-----QALKWC 330

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +  ++  +G+    + H  RHSF+T + L NG  + ++  +LGH  + TTQ+Y  V  K 
Sbjct: 331 LTSIKMKVGIKGRLSYHMGRHSFSTLMTLENGVPIETVSKMLGHADIRTTQVYARVTPKK 390

Query: 306 GGDWMME 312
             + M +
Sbjct: 391 LFEDMDK 397


>gi|159026600|emb|CAO86533.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 335

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 61/296 (20%), Positives = 106/296 (35%), Gaps = 16/296 (5%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P     +  +   +WL         S  T + Y  D   FL  L     + +T+   R  
Sbjct: 33  PVSPDLDWDRVLTDWLNTKR-----SPHTQRVYRRDIENFLADLNLELGKFLTLD--RHG 85

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           +Y  +  +  +     +   ++ R L+ IKS + +              + ++K    L 
Sbjct: 86  AYAIVSRYKGELIKNNLKSATINRRLAAIKSLVSFAYNCGHCE----FMLESVK-GEKLC 140

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
              +           +L     T     R+ A+L LL+   LR SE       +      
Sbjct: 141 AYRDTTGIDPETFKRVLGGIDRTSLKGIRDYALLILLWSNALRRSEVSKANIGDFDPVTK 200

Query: 187 TLRIQGK--GDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVF 243
           TLRI GK  G+   IV L  +  +AI  + +       +  + + +  G     L     
Sbjct: 201 TLRIFGKGRGNNSEIVSLGIATVRAIEAWLEARGEHQPDKALFVSVNPGYSDGRLCTQGI 260

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIY 298
              ++   +  G+    + H +RHS  T  L    GD+R +Q +  H  L+T  IY
Sbjct: 261 YTIVKTRCQDAGITKIMSPHRIRHSAITAALDATNGDVRRVQKLSRHSSLNTLLIY 316


>gi|38234408|ref|NP_940175.1| putative phage integrase [Corynebacterium diphtheriae NCTC 13129]
 gi|38200671|emb|CAE50367.1| Putative phage integrase [Corynebacterium diphtheriae]
          Length = 271

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 56/286 (19%), Positives = 116/286 (40%), Gaps = 43/286 (15%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++ ++L +  G ++ T+        + L F+          + +  ++  +I  +++   
Sbjct: 12  DYQEHL-LAGGRARGTIHVRISHISRCLTFID---------KPLWAVTTGDIERWLA--- 58

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
             + G  + K + + ++ F  +  +  +   +  + +  + +  S+PR            
Sbjct: 59  AGEWGPAARKSARTSVRVFFAWAVREGLIETNPAITIIPVPQVRSVPRP----------- 107

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQGKGDKI 197
                 S   K    R    + ++  CGLR  E   +   +   +     LR++GKG   
Sbjct: 108 CPDALISDAMKVAAPRVRLAIEIMATCGLRRDECARVRAGDVEPVGQGWILRVRGKGGHE 167

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R++P  P + + I               Q  +F G     ++ G   + I +      LP
Sbjct: 168 RLIPCPPHLARRI------------AAAQGWVFPGGANGHVSAGWLGKLISRA-----LP 210

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            + T H +RH +AT    +  DLR++Q +LGH  ++TTQIYT V+ 
Sbjct: 211 GAWTPHKIRHRYATVAYGDTYDLRAVQELLGHASVATTQIYTAVSD 256


>gi|327395182|dbj|BAK12604.1| phage integrase [Pantoea ananatis AJ13355]
          Length = 327

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 63/319 (19%), Positives = 121/319 (37%), Gaps = 38/319 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + WL+ L  + G +  TL +Y      +  F +    E        ++ + ++ A+I  +
Sbjct: 14  ERWLK-LLSDLGRAPATLTAYRAALCHYFAFCSRNRIEP------EKVRFDDMAAYIRPQ 66

Query: 79  RTQ---KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL----------KKSNSL 125
                      +L+  LS ++ +  +L    +   + +                 +   L
Sbjct: 67  LPGMPFPAASATLQLRLSAVRLWYDFLMYLDLCKVNPLPRSGTPGMLCSARGLVPRIVKL 126

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           PR  ++ Q   L       +         R+  +L L Y   LR SE  +L+  ++    
Sbjct: 127 PRIPDDAQ-WQLFQAHAADSP-------LRDRLMLALTYCGALRRSEVTALSTDDLDFAH 178

Query: 186 STLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG----IRGKPL 238
             +R++    K    RIV   P++   +  +       L+  ++  LFR      +G PL
Sbjct: 179 RLIRVRAETTKNRHERIVCYSPALTPVLAAHL--LQMKLSGMVKGALFRSESDRNQGAPL 236

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +   + + +R+     GLP   + HT RH   THL   G  L  + +  GH    TTQIY
Sbjct: 237 SYWSWSKTVRKWALESGLP-DISTHTFRHLRLTHLARAGWKLHELATYAGHRDPRTTQIY 295

Query: 299 TNVNSKNGGDWMMEIYDQT 317
            +++ ++    M    +  
Sbjct: 296 IHLSGRDLAARMAGAIETA 314


>gi|258651476|ref|YP_003200632.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258652719|ref|YP_003201875.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258554701|gb|ACV77643.1| integrase family protein [Nakamurella multipartita DSM 44233]
 gi|258555944|gb|ACV78886.1| integrase family protein [Nakamurella multipartita DSM 44233]
          Length = 617

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 64/323 (19%), Positives = 119/323 (36%), Gaps = 38/323 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
             +L  L +   L   ++ S E   RQ    L   +    ++ T+  +   +I A+ +  
Sbjct: 225 HRYLDQLRV--SLRASSVASIEITLRQIAGHLISTS----SVTTVADIGRPQIEAYGTWL 278

Query: 79  RTQK-------IGDRSLKRSLSGIKSFLKYLKKRKITTES---NILNMRNLKKSNSLPRA 128
             +        I   ++   +  + +F + + +           + +     K   LPR 
Sbjct: 279 AGRGGYRKNSTISKTTIGMRMCHLGAFFRRIIEWGYPDAPLRPPVFSSDRPAKDKPLPRF 338

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQS 186
           L++              +   +  D      + +L   G+R  E L LT      +    
Sbjct: 339 LDDA-------ATAKFMAAARELPDPFGRLAIEILARTGMRKGELLGLTTDAVVQIGSAY 391

Query: 187 TLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            LRI  GK    R VPL P ++  I  + +  P   N +    L    RG+P+ P     
Sbjct: 392 WLRIPVGKLHNDRYVPLHPQLKTMIDNWLEQRPDWQNSH----LLFTDRGRPIPPTRVDH 447

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            ++      G+      H LRH+ AT  ++ G  L +I ++LGH  +S T +Y  +  + 
Sbjct: 448 AVQTAATAAGIG-HVHPHQLRHTLATQAINRGMSLEAIAALLGHKTMSMTLVYARIADRT 506

Query: 306 GGD-------WMMEIYDQTHPSI 321
             D        +  +Y Q  P++
Sbjct: 507 VADQYFTVTEKVQALYQQQQPAM 529


>gi|288800626|ref|ZP_06406084.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332839|gb|EFC71319.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 431

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 59/286 (20%), Positives = 106/286 (37%), Gaps = 16/286 (5%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           R    F+     E I I+TI +  + E R F+   + + +   S+   L  +   +    
Sbjct: 136 RMLCEFIKDKGNEDIDIRTITEELFEEYRFFL---KKKGLKGSSINNYLCWLSRLMFRAV 192

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
            ++I   +   +    K   ++ R L++     L+   +  +  E          +    
Sbjct: 193 SQRIIRYNPFEHAEYEKVEKAI-RFLSKSDVANLMAMKMCDSDAELA------RRMFIFS 245

Query: 164 YGCGLRISEALSLTPQNIM---DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
              GL I++   LT  +I    D Q  +R  + K     IVPL P  +  I +   L   
Sbjct: 246 CFTGLAITDMEHLTFGHIKSAADGQMYIRKERQKTKVEFIVPLHPIAKTIIEQQRQLKAV 305

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
               N      R I     +  V    +  + +  G+    + H  RH+F T  LS G  
Sbjct: 306 KEEGNNMDMDNRLIFQPCCSRNVLAAKLSIVGKACGIKQRLSYHMGRHTFGTMCLSAGIP 365

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           + SI  ++GH  +++TQIY  V        M  +  +      +K+
Sbjct: 366 IESIAKMMGHASIASTQIYAQVTDCKISKDMDRLIAKH--KAKEKE 409


>gi|332184082|gb|AEE26336.1| site-specific recombinase, phage integrase family [Francisella cf.
           novicida 3523]
          Length = 375

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 59/292 (20%), Positives = 116/292 (39%), Gaps = 34/292 (11%)

Query: 35  TLQSYECDT-----------RQFLIFLAFYTEEKITIQTIRQL-SYTEIRAFI-SKRRTQ 81
           TL+ Y  D             + L F      EKI  +++++L     +  ++   ++  
Sbjct: 98  TLREYINDFYYDWYNKNNKNTKALEFSLGRRLEKIMDKSLKELNDKKVMIKYLNDYQKIN 157

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
           K  D +  R LS +K       +      +NI +++ LK + +  R L+  +     +++
Sbjct: 158 KTSDATYNRMLSTLKGMFSRAYEFGYIETNNIKDVKLLKINATKVRYLSSSETTRFFESL 217

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIR 198
            L TS + K        I+ + Y  G+R SE L+LT  +I  D   + +     K  K+R
Sbjct: 218 ELITSQQAKE-------IIIIAYYTGMRKSEILTLTFDDIDFDTKQIVLKSENTKSSKVR 270

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            +P+   V + +                  +F   +          R   +L +   +  
Sbjct: 271 YIPMHEKVLQILSN---------KNQKSGYIFVSEKTGKPYDN-IDRSWTKLMKLSEIE- 319

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           +   H LRH+F + L+  G  + ++  + GH  + TTQIY +++       +
Sbjct: 320 NFRFHDLRHNFCSMLVMKGVPIYTVAQLAGHADVKTTQIYAHLSPDVKKSAI 371


>gi|266619589|ref|ZP_06112524.1| integrase/recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
 gi|288868877|gb|EFD01176.1| integrase/recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
          Length = 279

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 110/298 (36%), Gaps = 31/298 (10%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           + + + Q L  E   +  T++ Y  D + F  +L   TE          +S   +  +  
Sbjct: 8   QLEKFKQFLIDEERAAA-TIEKYRRDVQAFFTWLPEKTE----------VSKEMVLEYKR 56

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           K   Q     S    L  +  F  +  +R +        +R LK       +  E+    
Sbjct: 57  KLAAQ-YKSTSANSMLVALNRFFGFCGRRDL-------QVRLLKVQR---VSFRERSREM 105

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
            V+          +  D R S ++  L   G+R+SE   +T +       ++ I GKG  
Sbjct: 106 SVEEYKRLVRAAREKKDERLSLLIQTLCSTGIRVSEHRCITVEA--LRSGSICIDGKGK- 162

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R V L   ++K +  Y              P+F    GKPLN       ++ L +  G+
Sbjct: 163 ERAVFLPKKLQKQLKYYCKEKKI-----TTGPVFITKSGKPLNRCNIWAEMKALCKNAGI 217

Query: 257 -PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            P     H LRH FA        D+  +  ILGH  + TT+IYT+   +     +  +
Sbjct: 218 EPQKVFPHNLRHLFALTYYRLEKDIVRLADILGHANIETTRIYTSTTEEECLRSLSRM 275


>gi|219853755|ref|YP_002470877.1| hypothetical protein CKR_0412 [Clostridium kluyveri NBRC 12016]
 gi|219567479|dbj|BAH05463.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 323

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 65/311 (20%), Positives = 118/311 (37%), Gaps = 26/311 (8%)

Query: 18  RQNWLQNLEI--ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           ++ + + + I   RGLS+ T+++Y    + F  FL          +    L    I +++
Sbjct: 26  QEAFKEYIAISKVRGLSEDTIKTYYYHNKYFCEFLGKN-------KNCGGLDVKTIESYV 78

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
              + + +   ++   L  I   LKY  K+    E    N+  +K          E +  
Sbjct: 79  LFLQEKGMKGTTINSYLQNISPVLKYCMKKGYIFEY--FNIPYVKVQQEHKEIFTEDELN 136

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKG 194
           TL+            ++  R    ++LL   GLR SE   L   N+      +     K 
Sbjct: 137 TLL-----QPPKSKDFVSIRVYTCVWLLASTGLRASELRHLKVNNLNMIDRIITCNYTKN 191

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K R +P+  S+ + +  Y +L   D     +  LF  + G  L+    Q+ I +     
Sbjct: 192 KKARYLPISSSLYEVLDNYLNLRKGD----GEDYLFPTVYGDILSRTSLQKGIVKYCHQR 247

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           G+  S   H  RH+F T  +        +++I GH        Y N    +    M+E+ 
Sbjct: 248 GIKKS-GIHIYRHTFITRSVEKNVSPLILKNITGHATFKQLNNYYN----SRMSSMVEVI 302

Query: 315 DQTHPSITQKD 325
           D   P + +K+
Sbjct: 303 DNIAPQLNKKE 313


>gi|298531237|ref|ZP_07018637.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508847|gb|EFI32753.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 384

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 56/281 (19%), Positives = 106/281 (37%), Gaps = 19/281 (6%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           +Q Y+   +  L FL  +   K     + Q++  +I A   +R        S  R +  +
Sbjct: 114 VQGYKRSWKSDLSFLRTHLVPKFGKLHLDQITRDDIMAMHQERLKNGAAPASANRLVILL 173

Query: 96  KSFLK--YLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
           +         +    T +    +   +++N   R L E++   L   V    +   +   
Sbjct: 174 RYMFNLAIQWETPGVTVNPTKGVPLAEENNQRERYLTEEEVQRLCKAVKESENPLLEP-- 231

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILE 212
                I+ +L   G R SE L+   +++  ++   RI   K  K R VPL  S  + +  
Sbjct: 232 -----IISMLILTGARKSEVLNAKWEDLDLERKRWRIPYTKSGKPRTVPLSESALEVLRS 286

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                     +     +F                    R   GL      HTLRHSFA+ 
Sbjct: 287 VP-------KVEGSEYIFPSPVTGKPF-NSIYNSWNTARIKSGLE-DVKIHTLRHSFASF 337

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           L++ G +L  +  +LGH ++ TT  Y++++ +   + +  +
Sbjct: 338 LVNAGRNLYEVGKLLGHTQMRTTMRYSHLSDETLAEAVNTV 378


>gi|165873378|ref|ZP_02217977.1| integrase/recombinase, putative [Bacillus anthracis str. A0488]
 gi|167636799|ref|ZP_02395082.1| integrase/recombinase, putative [Bacillus anthracis str. A0442]
 gi|167642097|ref|ZP_02400319.1| integrase/recombinase, putative [Bacillus anthracis str. A0193]
 gi|170689746|ref|ZP_02880916.1| integrase/recombinase, putative [Bacillus anthracis str. A0465]
 gi|170709562|ref|ZP_02899962.1| integrase/recombinase, putative [Bacillus anthracis str. A0389]
 gi|177656393|ref|ZP_02937286.1| integrase/recombinase, putative [Bacillus anthracis str. A0174]
 gi|190569558|ref|ZP_03022419.1| integrase/recombinase, putative [Bacillus anthracis Tsiankovskii-I]
 gi|225871653|ref|YP_002753011.1| integrase/recombinase, putative [Bacillus cereus 03BB102]
 gi|227811599|ref|YP_002811610.1| integrase/recombinase, putative [Bacillus anthracis str. CDC 684]
 gi|229599814|ref|YP_002860839.1| integrase/recombinase, putative [Bacillus anthracis str. A0248]
 gi|254687863|ref|ZP_05151719.1| integrase/recombinase, putative [Bacillus anthracis str.
           CNEVA-9066]
 gi|254739157|ref|ZP_05196859.1| integrase/recombinase, putative [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744957|ref|ZP_05202634.1| integrase/recombinase, putative [Bacillus anthracis str. Kruger B]
 gi|254756553|ref|ZP_05208582.1| integrase/recombinase, putative [Bacillus anthracis str. Vollum]
 gi|254762487|ref|ZP_05214327.1| integrase/recombinase, putative [Bacillus anthracis str. Australia
           94]
 gi|301068214|ref|YP_003786985.1| integrase/recombinase [Bacillus anthracis CI]
 gi|164710753|gb|EDR16331.1| integrase/recombinase, putative [Bacillus anthracis str. A0488]
 gi|167509780|gb|EDR85204.1| integrase/recombinase, putative [Bacillus anthracis str. A0193]
 gi|167527725|gb|EDR90564.1| integrase/recombinase, putative [Bacillus anthracis str. A0442]
 gi|170125523|gb|EDS94450.1| integrase/recombinase, putative [Bacillus anthracis str. A0389]
 gi|170666121|gb|EDT16914.1| integrase/recombinase, putative [Bacillus anthracis str. A0465]
 gi|172079753|gb|EDT64870.1| integrase/recombinase, putative [Bacillus anthracis str. A0174]
 gi|190559337|gb|EDV13361.1| integrase/recombinase, putative [Bacillus anthracis Tsiankovskii-I]
 gi|225785568|gb|ACO25786.1| putative integrase/recombinase [Bacillus cereus 03BB102]
 gi|227007973|gb|ACP17715.1| integrase/recombinase, putative [Bacillus anthracis str. CDC 684]
 gi|229269433|gb|ACQ51069.1| integrase/recombinase, putative [Bacillus anthracis str. A0248]
 gi|300379300|gb|ADK08203.1| integrase/recombinase, putative [Bacillus cereus biovar anthracis
           str. CI]
          Length = 347

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 66/286 (23%), Positives = 120/286 (41%), Gaps = 29/286 (10%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +  S+ T + Y  D   FL ++        TI  I++LS+ E+  +  +  ++K    +L
Sbjct: 59  KKRSERTKKLYLHDLSHFLRYIKE------TIGIIKELSHNEMEIYFYQL-SKKYAATTL 111

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQALTLVDNVLLHTS 146
           +R  + ++ FLKY+      +++    ++ +  KK   + R L  ++   ++D       
Sbjct: 112 RRKKTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLFPEEVNEILD------- 164

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPL 202
              K  +    ++ +LL   GLRI E  +    +++   S     LR+ GKG+K R V +
Sbjct: 165 -TLKKTNFFMYSLFFLLTTTGLRIEEVANAKWADLVFHPSLNVYLLRVVGKGNKTREVRI 223

Query: 203 LPSVRKAILEYYDLCPF--DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-- 258
              V   +     L     +L+ +          G         +Y+ +      LP   
Sbjct: 224 FEDVLNDLCHLRQLRKQKSELDASSSSAFLPKADGSHYRADYLSKYVAEKIEETNLPFLR 283

Query: 259 ----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                 T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y  
Sbjct: 284 YRKHRITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLR 329


>gi|228924908|ref|ZP_04088061.1| Integrase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228834752|gb|EEM80238.1| Integrase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 371

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 70/351 (19%), Positives = 130/351 (37%), Gaps = 47/351 (13%)

Query: 10  VSFELLKERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL-----------AFYTEE 56
              E  KE+  W  ++ +E +  LS  TL  Y  +   FL +L                 
Sbjct: 18  ARVERHKEKMPWYIIEYIEEKTNLSPATLYGYLIEYEMFLQWLITSRLATVDGKVVTEIH 77

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY-------LKKRKITT 109
           ++TI+T+  L   +++ F S    Q    +++ R+ S +KS   Y               
Sbjct: 78  EVTIETLEHLPLKQVKRFKSYLERQGNKTKAVIRTFSALKSLFNYLTSNTEDDNGECYFY 137

Query: 110 ESNILNMRNLKKSN--------------------SLPRALNEKQALTLVDNVLLHTSHET 149
            + +  M   K+                         R L+  +   ++           
Sbjct: 138 RNVMAKMEIHKEKIDAAARAKEISEVIFHNNDDIKFMRFLSI-EYEKMLQETAPGKLRFF 196

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           K    R+ AIL L+ G GLR+SEA SLT  +I      +++  KGDK   +    +    
Sbjct: 197 KRDRERDIAILSLILGTGLRVSEAASLTISSINFRTRYIKVVRKGDKKSSILATQTALDD 256

Query: 210 ILEYYDLCPFDLN-LNIQLPLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           + EY  +        + +  LF          ++    Q+   +  +        + H L
Sbjct: 257 VQEYLKVRAVRYKCPDNEDILFVTNYKGSYAQISVNAIQKLTEKYTKA--FDEKKSPHKL 314

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           RH++AT+  +   DL  + + +GH  + TT +YTN++     + +  +  +
Sbjct: 315 RHTYATNHYNENKDLVLLANQMGHNSMETTSLYTNIDDSKRREAIERLEKR 365


>gi|186471688|ref|YP_001863006.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184197997|gb|ACC75960.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 405

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 142/299 (47%), Gaps = 20/299 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++LQ+L   RG +  T   ++   R FL  +A      +  +T+R LS T++  +I + +
Sbjct: 112 HYLQHLRELRGFAVSTAAQHDSTLRDFLGRVA------LPDRTLRTLSATDVENYI-RLK 164

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALTL 137
           ++++  ++L+  ++ +++FL+Y + R   T   +  +   +  +    PRAL+ K    L
Sbjct: 165 SREVTRQTLQHVIAHLRAFLRYCEDRGDITPG-LHCIDTPRTYRGELPPRALDWKLVPKL 223

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           V++V  H+         R+ A+L+L+   GLR SE  +LT  +I  +  TL +Q +    
Sbjct: 224 VNSVDRHS-----RTGWRDHAVLHLMAYYGLRASEVAALTLSSINWESRTLHVQQRK--T 276

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK--PLNPGVFQRYIRQLRRYLG 255
           R V +LP   + I           + +    LF   R    PL          +  R  G
Sbjct: 277 RSVLVLPLADRTINLLRRYLRCGRSGSDCPALFLRARSPAGPLTHYGVVDIFCKRARLSG 336

Query: 256 LPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           L + +++++ LRH+FA  LL  G   ++I  ILGH  L +T +Y  ++        +++
Sbjct: 337 LAITNSSSYALRHAFAMRLLDRGVGTKAIGDILGHRSLESTCVYLRLDIAMLRSVALQV 395


>gi|149921935|ref|ZP_01910378.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149817197|gb|EDM76675.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 369

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 94/279 (33%), Gaps = 20/279 (7%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102
            R+    L  +         + ++   +I  +I+++    +   ++   L  +K  L   
Sbjct: 105 LREKRRTLDNHLIPAFGELRLDEIRARDIDRYITRKHADGLSTSTISNHLIVLKRLLN-- 162

Query: 103 KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
             R+      I  +   KK       L++ +A  L+                        
Sbjct: 163 VARRWELLDRIPEIPTPKKPART-DFLSKDEARALLVGAEEQWRSLVLLGLRTGLR---- 217

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQ------GKGDKIRIVPLLPSVRKAILEYYDL 216
                  + E   L  +++  +   +R++      G G           + + I E   +
Sbjct: 218 -------LGELRGLRWRDVDLEGGQVRVEQAVTNAGIGTPKSGKGRSVPLARDIREALAV 270

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
                       +F    G+PL      R + +     G+    T H LRH+FA+H +  
Sbjct: 271 RRGPRRRKPDTLVFAQSDGRPLAHNTIGRALTRAAEAAGIERRITPHVLRHTFASHAVLA 330

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           G  +R +Q  LGH  ++ T  Y +++ +  G  +  + D
Sbjct: 331 GVPIRIVQGWLGHADITMTMRYAHLSPEGHGGMIDRLLD 369


>gi|283954436|ref|ZP_06371956.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283794053|gb|EFC32802.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 354

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 124/283 (43%), Gaps = 24/283 (8%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y    ++   +L FY      + +++Q+    I   ++   T  + D S K     +
Sbjct: 73  VNTYFNPLKKVFEYLNFYK-----LYSLKQIDEELIVEVLAS-ITGALSDASKKNYRIAV 126

Query: 96  KSFLKYLKKRKITTESNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTSH 147
            +F  +L K+    E   +   NLK        K   LP  ++E++    +D +      
Sbjct: 127 INFFDFLDKQNEEDEKAHIFDINLKNWAGIAGSKGVKLPEFMSEEELKKFLDAIENVDFR 186

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ--STLRIQGKGDKIRIVPLLPS 205
                  RN  I+ ++   G+R+SEA+++   +I ++     +RI+ KG+K RIV +   
Sbjct: 187 SNT---IRNKLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRIVMIKKE 243

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHT 264
           +   +L+   +     +      LF   +G PL      R + QL    G+      AH 
Sbjct: 244 LIYDLLKNVSINYMSKDA----LLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHM 299

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           LRH+FAT L     DL  +Q  LGH  L+T++IYT+ ++    
Sbjct: 300 LRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLK 342


>gi|153951127|ref|YP_001398120.1| phage integrase family site specific recombinase [Campylobacter
           jejuni subsp. doylei 269.97]
 gi|152938573|gb|ABS43314.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. doylei 269.97]
          Length = 354

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 127/283 (44%), Gaps = 24/283 (8%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y    ++   +L FY      + +++Q+    I   ++   T  + D S K     +
Sbjct: 73  VNTYFNPLKKVFEYLNFYK-----LYSLKQIDEELIVEVLAS-ITGALSDASKKNYRIAV 126

Query: 96  KSFLKYLKKRKITTESNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTSH 147
            +F  +L K+    E   +   NLK        K   LP  ++E++    +D +    + 
Sbjct: 127 INFFVFLDKQNEEDEKAHIFDINLKNWAGIAGSKGVKLPEFMSEEELKKFLDAIE---NA 183

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ--STLRIQGKGDKIRIVPLLPS 205
           + K    RN  I+ ++   G+R+SEA+++   +I ++     +RI+ KG+K R+V +   
Sbjct: 184 DFKNNTIRNKLIIKIIIFTGIRVSEAINIKIGDISEENDLYIIRIRAKGNKYRVVMIKKE 243

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHT 264
           +   +L+   +     +      LF   +G PL      R + QL    G+      AH 
Sbjct: 244 LIYDLLKNVSINYMSKDA----LLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHM 299

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           LRH+FAT L     DL  +Q  LGH  L+T++IYT+ ++    
Sbjct: 300 LRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLK 342


>gi|83816861|ref|YP_446969.1| phage integrase family site specific recombinase [Salinibacter
           ruber DSM 13855]
 gi|83758255|gb|ABC46367.1| site-specific recombinase, phage integrase family, truncation
           [Salinibacter ruber DSM 13855]
          Length = 191

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 52/194 (26%), Positives = 88/194 (45%), Gaps = 10/194 (5%)

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           + + LPR L E++   L+        ++  +   R+   + ++   GLR SEA +L P+ 
Sbjct: 3   RPDKLPRVLTEEETDRLLSE-----PNQRYFGPHRDYLYMRVMLKAGLRASEATALRPER 57

Query: 181 IMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           I      L ++ GKG K R + +   + + +  + D             L    +G  + 
Sbjct: 58  IDLMSGKLMVREGKGAKDRTLWIGEELLEELQGWMDRRQE--KAPKADYLLPTSKGTQVA 115

Query: 240 PGVFQRYIRQLRRYLGLPL--STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
               +R +++  R  G+      + HTLRH+FAT L  + G +R +Q  LGH  LSTT I
Sbjct: 116 TSHLRRSVKRYARDAGIEEVERVSPHTLRHTFATRLYRSAGKIRLVQKALGHSDLSTTMI 175

Query: 298 YTNVNSKNGGDWMM 311
           YT+V  +     M 
Sbjct: 176 YTHVVDEELEGAMK 189


>gi|167463246|ref|ZP_02328335.1| integrase-recombinase protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322382733|ref|ZP_08056583.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321153302|gb|EFX45740.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 232

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 49/252 (19%), Positives = 104/252 (41%), Gaps = 25/252 (9%)

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           ++  +++ +I      +    +++   + +    +YL   +I    NI      K  +  
Sbjct: 1   MTRIDVQQYIQHLEKNRNSAATIENKFAALSVLARYLNVAEILK--NIRRPEARKSRHVA 58

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P++L+  +   ++  V        +  + R+ AI+YL    GLR+SE ++L  ++I+  Q
Sbjct: 59  PKSLDRNERNRILREV-------ERTRNQRDIAIVYLFVYSGLRVSEMVALDREDIVIGQ 111

Query: 186 STLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
            +  +    GKG+  R VPL    R  +  Y +    D     Q  LF     + ++   
Sbjct: 112 RSGSVTVRNGKGNIERTVPLPVEARLQLSLYLESRTDD-----QSALFLSNYRRRISVRS 166

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            QR +               H LRH++   L+  G D+ ++  + GH  ++ T+ Y   +
Sbjct: 167 VQRVLE--------KFGVHPHQLRHTYCRELVGAGVDIATVAELAGHADINMTRRYAKPS 218

Query: 303 SKNGGDWMMEIY 314
           +      + + +
Sbjct: 219 AAELEHAIEKAF 230


>gi|296163644|ref|ZP_06846371.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886111|gb|EFG66002.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 355

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 64/325 (19%), Positives = 120/325 (36%), Gaps = 54/325 (16%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK------- 82
           GL++ T+ +Y      FL F   +         +R  S+  I  +I + RT+        
Sbjct: 35  GLARNTITAYMYAVEGFLRFGQEHG------VDLRGTSHEVIARYIGEMRTRPRRSRPNE 88

Query: 83  --------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--------------NLK 120
                   + + +L++ ++ ++    +L    +   + +   R               ++
Sbjct: 89  TRTGSGGFLSNATLQQRITAVRLLFDFLIDEGLLRTNPVSRGRCTSSSRFGAGSERGLVQ 148

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           + + LP    E+Q  TL+  V             RN  +L   Y   LR  E   L   +
Sbjct: 149 RFHKLPWIPTEEQWTTLLAAVREEP--------MRNRCMLAFAYDAALRREELCRLRSSD 200

Query: 181 IMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG----I 233
           +      LR++    KG + R+VP   +  + + +Y    P       +  LF       
Sbjct: 201 LDPAHRLLRVRAETTKGRRERVVPYSETAAELLRDYLRHRPP---GRDRHALFLSESPRN 257

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            G P+    + + +R +     +    + HTLRH   T L  +G  L  I    GH  L 
Sbjct: 258 HGAPITLWTWSKVVRSIALRADVTA-FSTHTLRHLCLTDLARSGWQLHEIARFAGHQSLE 316

Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTH 318
           TT+ Y +++ ++  D   +   Q H
Sbjct: 317 TTRQYIHLSGQDLADRFAKTMRQIH 341


>gi|256845130|ref|ZP_05550588.1| integrase/recombinase [Fusobacterium sp. 3_1_36A2]
 gi|256718689|gb|EEU32244.1| integrase/recombinase [Fusobacterium sp. 3_1_36A2]
          Length = 328

 Score =  128 bits (323), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 126/298 (42%), Gaps = 26/298 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTI----RQLSYTEIRAFISKR-RTQKIGDR 86
           S+ T++ Y    + FL F+ +  E   +I  +    + +   ++ A+I      +K+   
Sbjct: 33  SEKTVKDYMFHLKDFLHFV-YDGENDFSISEVIPLMQDIEKEDVEAYIVHLFEDRKLKKT 91

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL--NEKQALTLVDNVLLH 144
           S+   LS +KS  K L+   +  ++ +  ++  K + ++   L  +      ++    + 
Sbjct: 92  SVNTILSALKSLYKELESNGL--KNPVKYIKLFKVNRNIENVLKVSIDDIRKIIGLYKID 149

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR---IQGKGDKIRIVP 201
           +  +      RN  ILY L+  G+R  E L+L  ++ +  +       IQ K  K    P
Sbjct: 150 SEKK-----YRNITILYTLFYTGMRSKELLTLKFKHYLKREDEYFFKLIQTKSGKDVYKP 204

Query: 202 LLPSVRKAILEY----YDLCPFDLNLNIQLPLFRG--IRGKPLNPGVFQRYIRQLRRYLG 255
           +  S+ K + EY      +   DL    +  +F    +   PL+       I+ + + +G
Sbjct: 205 IHKSLVKKLEEYKKYLISMYSLDLKDLDEKYIFLTSVLDNTPLSYRSLNAIIQDMGKMIG 264

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                + H +RH+ AT L  +G D+  I+  LGH     T++Y N  S      + ++
Sbjct: 265 --KDISPHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARSILEKKVLEKL 320


>gi|325855562|ref|ZP_08171873.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483776|gb|EGC86736.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 439

 Score =  128 bits (323), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 57/289 (19%), Positives = 111/289 (38%), Gaps = 18/289 (6%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           R    F+     + I IQ++ +  + E R F+   + + +   ++   L  +   +    
Sbjct: 137 RMLCEFIKDLESKDIEIQSVTEELFEEYRFFL---KKKGLKGSTINNYLCWLSRLMFRAV 193

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
            ++I   +   +    K   ++ R L++     L+   +  +  E          +    
Sbjct: 194 SQRIIRYNPFEHAEYEKVEKAI-RFLSKSDVKNLMAMKMCDSDAELA------RRMFIFS 246

Query: 164 YGCGLRISEALSLT---PQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
              GL I++   LT    ++  D Q  +R  + K     IVPL P  +  I +   L   
Sbjct: 247 CFTGLAITDMEHLTFGYIKSAADGQMYIRKERQKTKMEFIVPLHPIAKTIIEQQRQLQAV 306

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
               N      R I     +  V    +  + +  G+    + H  RH+F T  LS G  
Sbjct: 307 KEESNNTNMDNRLIFQPCCSRSVLAAKLSIVGKACGIKQRLSYHMARHTFGTMCLSAGIP 366

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           + SI  ++GH  +++TQIY  V      + M ++  +      +K+K+N
Sbjct: 367 IESIAKMMGHASIASTQIYAQVTDCKISEDMDKLIAKHQ----EKNKEN 411


>gi|294023683|ref|YP_003547002.1| invertase/recombinase like protein [Sphingobium japonicum UT26S]
 gi|292677463|dbj|BAI98979.1| invertase/recombinase like protein [Sphingobium japonicum UT26S]
          Length = 320

 Score =  128 bits (323), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 61/305 (20%), Positives = 124/305 (40%), Gaps = 27/305 (8%)

Query: 6   LPEIVSFELLKERQNWLQNLEI-ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           LP +++    + R  +L+   +  R     T ++Y      FL +      E   + ++ 
Sbjct: 14  LPALIAAADERARLRFLEFFAVTIRN--PHTRRAYARAAGDFLAWC-----EARGVASLA 66

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            +    + A++     +++   S+K+ L+G++    +L    I   +   ++R    S  
Sbjct: 67  GVQPLHVAAWVEAL-GRELAAPSVKQQLAGVRHLFDWLVTGHIVPVNPAGSVRGPAHSQR 125

Query: 125 LPR--ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             +   L   +A  L+D++ + T         R+ A++ L+     RI  AL++  +++ 
Sbjct: 126 RGKTPVLAPDEARRLLDSIDVIT-----HAGLRDRALIGLMVYSFARIGAALAMRVEDVF 180

Query: 183 DDQSTLRIQ--GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI------- 233
                L ++   KG K   +P   ++   +  Y D C  +L  + + PLFR I       
Sbjct: 181 MQNRRLWVRLHEKGGKRHEMPCHHNLEDYLSAYIDGC--ELREDRKGPLFRTIARGTKRL 238

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
              PL        +R+      +  +   H+ R +  T  L NGG L +  ++  H    
Sbjct: 239 SETPLPQANAFAMVRRRAGAAEIGTAIGNHSFRATGITTYLKNGGTLETAATMANHSSTR 298

Query: 294 TTQIY 298
           TTQ+Y
Sbjct: 299 TTQLY 303


>gi|297620069|ref|YP_003708174.1| integrase family protein [Methanococcus voltae A3]
 gi|297379046|gb|ADI37201.1| integrase family protein [Methanococcus voltae A3]
          Length = 320

 Score =  128 bits (323), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 127/298 (42%), Gaps = 25/298 (8%)

Query: 15  LKERQNWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           + +   W+     ER    + + T++S   D  +  +FLAF  +      T   L+ +E 
Sbjct: 20  ITDENKWIAQFREEREFDRIKENTIKS---DISRLKVFLAFCKKLDKEPDT---LNRSEF 73

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNL-KKSNSLPRAL 129
             F +    ++    S+ +    +K F + L+       E+     R   K       ++
Sbjct: 74  TKFFNYLENERKLGNSVIQYFKLLKVFYRVLRLHNFKEFETECKERRRFSKFEVKHYDSI 133

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           + K    ++  +L H S      + R++ ++ +L+  G R+SE + +T ++    ++  R
Sbjct: 134 DSKILNEILKAILQHRSR----SNLRDALMIRMLWDTGCRVSEVIGITYEDCDFKEAKFR 189

Query: 190 IQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP----GVFQ 244
           I+  K    R V        A+ EY     +++N     P+F+ IRG P+       V++
Sbjct: 190 IRNTKSSNERFVVCSSDTLNALKEYVK---YNVNTGNSDPIFQSIRGGPVRRGWLSQVYR 246

Query: 245 RYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             + +L+    +P +     H+LRH  A  LL+ G  +  ++  LGH  + TT  Y +
Sbjct: 247 NAVVKLKEQGKIPKNRRVVVHSLRHGRAVELLNKGVPIEVVKEYLGHSSIETTLFYAH 304


>gi|312142468|ref|YP_003993914.1| integrase family protein [Halanaerobium sp. 'sapolanicus']
 gi|311903119|gb|ADQ13560.1| integrase family protein [Halanaerobium sp. 'sapolanicus']
          Length = 221

 Score =  128 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 91/225 (40%), Gaps = 31/225 (13%)

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            K+   +P  L E++   L++       +E      RN  ++ L+   GLR+ E L+L  
Sbjct: 2   PKRGRRIPEVLREEEQKQLLEVF-----NERYPTALRNKTMIRLMLKAGLRLGETLNLKW 56

Query: 179 QNIMDDQSTL-RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGI 233
            NI    + L  ++GKG K R + L       + ++ +     L      N    +F  +
Sbjct: 57  NNINFPAAKLSIVEGKGRKDRNLWLGEKTLNQLGKWRERQNKVLAEKNLENENNLVFTSL 116

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLP---------------------LSTTAHTLRHSFATH 272
            GK LN    ++ +       G+                         + H LRH+FAT 
Sbjct: 117 AGKKLNEANVRKMVYNYAEKTGIQEEVEKNYRDEEGKELEETYWQKKVSPHVLRHTFATE 176

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           L     DLR +Q  LGH  + TT IYT++  +   + M ++ ++ 
Sbjct: 177 LYRMTNDLRKVQKTLGHSSIQTTMIYTHLVDEELENDMKKLDEKY 221


>gi|291586238|gb|ADE18864.1| IntI1 integrase [Providencia stuartii]
          Length = 279

 Score =  128 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 110/298 (36%), Gaps = 64/298 (21%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVNWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
                +     F  + +   P    +R   +    FQR  ++     G+    T HTL
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTL 279


>gi|109947411|ref|YP_664639.1| integrase-recombinase protein [Helicobacter acinonychis str.
           Sheeba]
 gi|109714632|emb|CAJ99640.1| integrase-recombinase protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 361

 Score =  128 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 63/286 (22%), Positives = 124/286 (43%), Gaps = 16/286 (5%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y     +F  + +    E++   +++ +    +  F+S   T  +   + K     +
Sbjct: 73  INTYALPLLKFHEYFSKLITERLAFNSLKNIDEVMLAEFLS-IYTGGLSLATKKNYRIAL 131

Query: 96  KSFLKYLKKRK-------ITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLLHTS 146
                Y+ K+              + N+  + +   N LP  LN ++    +++  + T 
Sbjct: 132 LGLFSYIDKQNQDENEKSYIYNITLKNISGVSQSAGNKLPTYLNSEELEKFLES--IDTI 189

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLP 204
             +  +  RN  ++ ++   G+R +EAL L  ++   +    T+ I+GKGDK R V L  
Sbjct: 190 EMSAKVRVRNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVVLKA 249

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AH 263
              + +L+ + +      +   L LF   +G  L      + + ++  + GL      AH
Sbjct: 250 FHIENLLKEWLIERELYPVKNDL-LFCNQKGMALTQAYLYKQVERIINFAGLRREKNGAH 308

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            LRHSFAT L     DL  +Q  LGH  L+T++IYT+ + +   + 
Sbjct: 309 MLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 354


>gi|38637721|ref|NP_942695.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527059|gb|AAP85809.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 420

 Score =  128 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 64/321 (19%), Positives = 131/321 (40%), Gaps = 25/321 (7%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +PE +S  L    +++       R L   TL++       F  FL         I    Q
Sbjct: 116 VPEPMSTAL----RDYELYCRDRRHLRTTTLRARMRVIALFADFLGSR-----NITFFDQ 166

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNLKKSN 123
           +   ++ AF++ +   ++  +S+ R +S ++ FL++L  R I  +   ++L + ++ +  
Sbjct: 167 VQPADLCAFVTAQH--RLSAKSVSRIVSDVRCFLRFLLMRGILQQDLSHVLPVVHVPRDA 224

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           ++P   + +    L++         T     R+ AI  L    GLR+ +  +L+  ++  
Sbjct: 225 TIPSVWDPEVLTKLLE-----AVDRTSPKGKRDYAIFLLACRLGLRVGDIRALSLDDLKW 279

Query: 184 DQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PG 241
           + +T+ ++  K      +PL   V +A+++Y        + + ++ L       P     
Sbjct: 280 ETATIEVRQSKTLTPLCLPLTEEVGEALIDYLRSGRPQSD-HREVFLTLNAPFLPFREAD 338

Query: 242 VFQRYIRQLRRYLGL----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
                +R  +   G+    P     H+LRH+ AT LL      + I  ILGH   ++T I
Sbjct: 339 SLYWIVRHWKAIAGIHFRTPQRHGLHSLRHTLATRLLHEQTPFQVISDILGHATTASTLI 398

Query: 298 YTNVNSKNGGDWMMEIYDQTH 318
           Y   + +      +      H
Sbjct: 399 YAKTDVETLRTAALNTEKMRH 419


>gi|291444654|ref|ZP_06584044.1| site-specific recombinase [Streptomyces roseosporus NRRL 15998]
 gi|291444673|ref|ZP_06584063.1| site-specific recombinase [Streptomyces roseosporus NRRL 15998]
 gi|291347601|gb|EFE74505.1| site-specific recombinase [Streptomyces roseosporus NRRL 15998]
 gi|291347620|gb|EFE74524.1| site-specific recombinase [Streptomyces roseosporus NRRL 15998]
          Length = 314

 Score =  128 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 59/300 (19%), Positives = 105/300 (35%), Gaps = 31/300 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFL------------AFYTEEKITIQTIRQLS 67
           +W+++L   R LS  T++ Y      F  FL               T  +     +  + 
Sbjct: 4   SWIRSLRS-RNLSDNTIRIYSTAAAAFAEFLLDPENGYRPAVDQDGTPGRPAPADLDDIH 62

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
              + A+I+    ++    +       +K+   +L   +    S +  M+          
Sbjct: 63  REHVEAYITATM-RRTSASNAHNHFRSLKTMFNWLVDEEELDRSPMRTMKPP-------- 113

Query: 128 ALNEKQALTLVDNVL---LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
            L E +   + D  L         T + D R++A+L LL   G+R+SE       ++  D
Sbjct: 114 TLPEVEVPVIPDADLSKLFKACKGTTYADRRDTALLMLLLDTGVRLSELTDRRVGDLDLD 173

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIRG--KPLN 239
              L + GKG K R VP   +   A+  Y             + ++ L+ G R   + L 
Sbjct: 174 LKVLHVLGKGGKTRPVPFGNTCATALDRYLRAAAKHKGKPLDDDEMWLWWGHRNKGQRLT 233

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                  +++     G+      H  RH+FA     NGG+   +  I G         Y 
Sbjct: 234 IWGVGTMLKRRCAQAGIG-ELHPHQFRHTFAHQWKVNGGNEDDLMRITGWKSRQMLSRYA 292


>gi|148548062|ref|YP_001268164.1| phage integrase family protein [Pseudomonas putida F1]
 gi|148512120|gb|ABQ78980.1| phage integrase family protein [Pseudomonas putida F1]
          Length = 304

 Score =  128 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 57/287 (19%), Positives = 113/287 (39%), Gaps = 19/287 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           LQ +     L+  + Q+     +     L F     + +    +L    + A ++  R  
Sbjct: 10  LQYMA---RLAPSSQQTMRYILQDAADRLGFVDCNIVDV-PWHRLEPGHVIALVAALRAD 65

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLP--RALNEKQALTL 137
                S    ++ I+  +    ++ +     +L +R +K    + LP  R L       L
Sbjct: 66  GYAPNSSSLYVNAIRGVMNEAWRQGLIDHEQLLRIREVKPATGSRLPPGRNLRRSLIREL 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D      + + +    R++AI+ LLYG G+R SE++ +    +  +  +L++ GKG+  
Sbjct: 126 MDVC----AADPRPQGVRDAAIIALLYGTGMRKSESVDIDLDQVDFEARSLQVVGKGNHQ 181

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNP-GVFQRYIRQLRRY 253
            +    P   + +  + +L   DL    +   F   R  RG  +    + +  I  + R 
Sbjct: 182 LVKYAPPWAFEKLQAWLELRRQDLPAGAEDDPFLFNRIRRGNHITRARITKHAIYYIARQ 241

Query: 254 --LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
               + +    H  R +F T ++    DL   Q +  H  + TT IY
Sbjct: 242 RGAQVGVKIMPHDFRRAFITRVIEE-HDLSIAQKLAHHANIQTTAIY 287


>gi|149920837|ref|ZP_01909300.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149818355|gb|EDM77807.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 369

 Score =  128 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 94/279 (33%), Gaps = 20/279 (7%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102
            R+    L  +         + ++   +I  +I+++    +   ++   L  +K  L   
Sbjct: 105 LREKRRTLDNHLIPAFGELRLDEIRARDIDRYITRKHADGLSTSTISNHLIVLKRLLN-- 162

Query: 103 KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
             R+      I  +   KK       L++ +A  L+                        
Sbjct: 163 VARRWELLDRIPEIPTPKKPART-DFLSKDEARALLVGAEEQWRSLVLLGLRTGLR---- 217

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQ------GKGDKIRIVPLLPSVRKAILEYYDL 216
                  + E   L  +++  +   +R++      G G           + + I E   +
Sbjct: 218 -------LGELRGLRWRDVDLEGGRVRVEQAVTNAGIGTPKSGKGRSVPLARDIREALAV 270

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
                       +F    G+PL      R + +     G+    T H LRH+FA+H +  
Sbjct: 271 RRGPRRRKPDTLVFAQSDGRPLAHNTIGRALTRAAEAAGIERRITPHVLRHTFASHAVLA 330

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           G  +R +Q  LGH  ++ T  Y +++ +  G  +  + D
Sbjct: 331 GVPIRIVQGWLGHADITMTMRYAHLSPEGHGGMIDRLLD 369


>gi|296162870|ref|ZP_06845651.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886907|gb|EFG66744.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 417

 Score =  128 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 61/307 (19%), Positives = 125/307 (40%), Gaps = 14/307 (4%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
            +P   +  + +E + + + ++  RGL+  T         + L   A + +  + +  I+
Sbjct: 112 AVPANRATPVDEELRRYDEYMDHVRGLAPKTRSIALRIVGRLLT--ARFGKGAVDVAAIK 169

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN- 123
                 +R F + +        +    ++ ++ + +Y           I  +      + 
Sbjct: 170 ---PEHVRRFFAGQAKLYSKPANAGSVVASLRGYFRYRASLGDLVHGLIGAVSYPVNWSL 226

Query: 124 -SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            SLP++L  ++   L+      +  +      R  AI+      GLR  E   L+  +I 
Sbjct: 227 SSLPKSLTAEEVERLI-----RSLDQQGRSMRRADAIVRCALDLGLRSGEIARLSLDDID 281

Query: 183 DDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
               TL ++  KG +  ++PL  +  +AI  Y +      +           R +P    
Sbjct: 282 WQAGTLVLRHTKGRREDMLPLPATTGEAIAAYLEQERPKTSNRAIFVRHIAPRDQPAGTD 341

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + ++ IRQ     GLP + + H LRH+ A  LL++G  L+ +  +L H  L+TT IY  +
Sbjct: 342 LVRKTIRQAFTRAGLPYTRS-HLLRHTMANRLLASGSSLKEVADVLRHRSLNTTLIYAKL 400

Query: 302 NSKNGGD 308
           +S+   +
Sbjct: 401 DSRKLVE 407


>gi|227878623|ref|ZP_03996544.1| tyrosine recombinase [Lactobacillus crispatus JV-V01]
 gi|293381039|ref|ZP_06627062.1| site-specific tyrosine recombinase XerS [Lactobacillus crispatus
           214-1]
 gi|227861782|gb|EEJ69380.1| tyrosine recombinase [Lactobacillus crispatus JV-V01]
 gi|290922395|gb|EFD99374.1| site-specific tyrosine recombinase XerS [Lactobacillus crispatus
           214-1]
          Length = 355

 Score =  128 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 132/357 (36%), Gaps = 42/357 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT------ 54
           ME     E++  E+ K   ++++   +    S  T   Y  + R+F  +L          
Sbjct: 1   METAKYLELIQIEVNK-LPDFVKQFNLGTNHSLTTTYQYLTEIRRFFDWLRQENISSASD 59

Query: 55  EEKITIQTIRQLSYTEIRAFISKR------RTQKIGDRSLKRSLSGIKSFLKY------- 101
              +T  T+  L   +I  +I         + +     ++ RS++ ++S  K+       
Sbjct: 60  NAHVTTDTLANLRRNDIMLYIDYLGHTRNKQGRLNSPTTINRSINALRSLFKFLTITADN 119

Query: 102 LKKRKITTESNILNMRNLKKSNSL---PRALN--------EKQALTLVDNVLLHTSHETK 150
                    + +L + +L  + +L      L         + + LT +D   ++  ++  
Sbjct: 120 NHGEPYFERNVMLKINSLNDTQTLNYRAHVLESHMYTGKLKFEFLTFIDQDYINHCNKQA 179

Query: 151 WID-----ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
            I       R+ AI  L+ G G+R+SE   +   ++    + L +  KG +   VP+   
Sbjct: 180 KIGFKQNKERDMAIAALILGTGIRVSECAGVDLSDLNLKDAVLDVTRKGGQKDSVPIAEW 239

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLSTT 261
               I  Y  +     + + +   F   +       +     ++ I +     G P   T
Sbjct: 240 TLPYIKRYKGIRNERYHADSKQVAFFLTQWHGQTRRITTNAIEKMINKYSAAFGHP--LT 297

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
            H LRH+ A+ L     D   +   LG    S T +YT+V+ K     + EI  + H
Sbjct: 298 PHKLRHTVASELYEVTKDQVLVAQQLGQKGTSATDLYTHVDQKKQRAALNEISKKNH 354


>gi|300710820|ref|YP_003736634.1| integrase/recombinase [Halalkalicoccus jeotgali B3]
 gi|299124503|gb|ADJ14842.1| integrase/recombinase [Halalkalicoccus jeotgali B3]
          Length = 310

 Score =  128 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 53/318 (16%), Positives = 114/318 (35%), Gaps = 37/318 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L   +G    T   Y    +Q+  +L           + +++   +I  FI  
Sbjct: 11  IERFLDRLMRIKGDDHGTYIQYSMCLKQYDQWLHEQN------LSAKEVEPLDIEDFILS 64

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNI-------LNMRNLKKSNSLPRAL 129
            +       +++   + ++S     K + ++             LN+ + +  ++L   +
Sbjct: 65  LKNDNYSANTIRTRYTAVQSLYSSAKDKFQVIDHHPCDGITLSDLNISSKRDDDTL-HYV 123

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            E +   ++D +        +     N  I+ +L+  G+R+SE + +   N+    + ++
Sbjct: 124 TEDEKDKMIDAL-------PERHFVSNKLIIEILWQTGMRVSELIDIEVDNVDQRNNRIK 176

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           I  K           +    +L+ +      L  N +  LF G     +   V +  I  
Sbjct: 177 IYRKKTSEWDYVHYQNSLNRLLDIWLETERPLRANSE-YLFPGQSSDQIGYSVVRSVILD 235

Query: 250 LRRYLG----------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
             +               +    H+ RH  A H L +G ++R++Q  LGH  L  T  Y 
Sbjct: 236 AAQEFNEVAQETQDGNKRMRIRPHSFRHGHAVHALKSGVNVRAVQEQLGHASLERTMQYM 295

Query: 300 NVNSKNGGDWMMEIYDQT 317
            +      D + E Y + 
Sbjct: 296 RL----VEDDVAEAYKKF 309


>gi|258517010|ref|YP_003193232.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257780715|gb|ACV64609.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 295

 Score =  128 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 58/304 (19%), Positives = 115/304 (37%), Gaps = 27/304 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT--EEKITIQTIRQLSYTEIRAFISKR 78
           +L  L+ E G S LT++ Y     +F  +               I Q +  +I  F  + 
Sbjct: 5   YLDKLKRE-GKSDLTIRQYRSSLARFQNWFEAEGVGRGDGGTTGIGQATAIDISHF-KRF 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     ++K+SLS ++S+ ++L  + I  ++ +  +  +  + + P+ L   +  T++
Sbjct: 63  AVRNFKPNTVKQSLSHLRSYFQFLVSQNIIPDNPVQFVATITTAKTTPKWLTRTEQNTII 122

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGD 195
             V  +       +                R+ E   L   +I   +     +  QGK D
Sbjct: 123 RYVRKYGDLRELTMTTLLLHTGL-------RVQELADLRLVDIEIGERKGKVIVRQGKHD 175

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           + R +PL   VR  + +Y          +I   LF    G  +     Q  + + R+  G
Sbjct: 176 RHREIPLNADVRHLLKKYLT------EYSISAYLFPSKTGDKMTTRNIQYIMEKYRKLTG 229

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF------RLSTTQIYTNVNSKNGGDW 309
           +      H LRH+F   L++    L  +  + GH        +  T +YT    ++    
Sbjct: 230 ID-HFNCHALRHTFCHELVTRKISLDVVARLAGHMRTDGTPNIQQTLVYTQPGEEDLQRA 288

Query: 310 MMEI 313
           + E+
Sbjct: 289 VEEL 292


>gi|239941212|ref|ZP_04693149.1| phage integrase family site specific recombinase [Streptomyces
           roseosporus NRRL 15998]
 gi|239941232|ref|ZP_04693169.1| phage integrase family site specific recombinase [Streptomyces
           roseosporus NRRL 15998]
 gi|239987688|ref|ZP_04708352.1| phage integrase family site specific recombinase [Streptomyces
           roseosporus NRRL 11379]
          Length = 324

 Score =  128 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 59/300 (19%), Positives = 105/300 (35%), Gaps = 31/300 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFL------------AFYTEEKITIQTIRQLS 67
           +W+++L   R LS  T++ Y      F  FL               T  +     +  + 
Sbjct: 14  SWIRSLRS-RNLSDNTIRIYSTAAAAFAEFLLDPENGYRPAVDQDGTPGRPAPADLDDIH 72

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
              + A+I+    ++    +       +K+   +L   +    S +  M+          
Sbjct: 73  REHVEAYITATM-RRTSASNAHNHFRSLKTMFNWLVDEEELDRSPMRTMKPP-------- 123

Query: 128 ALNEKQALTLVDNVL---LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
            L E +   + D  L         T + D R++A+L LL   G+R+SE       ++  D
Sbjct: 124 TLPEVEVPVIPDADLSKLFKACKGTTYADRRDTALLMLLLDTGVRLSELTDRRVGDLDLD 183

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIRG--KPLN 239
              L + GKG K R VP   +   A+  Y             + ++ L+ G R   + L 
Sbjct: 184 LKVLHVLGKGGKTRPVPFGNTCATALDRYLRAAAKHKGKPLDDDEMWLWWGHRNKGQRLT 243

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                  +++     G+      H  RH+FA     NGG+   +  I G         Y 
Sbjct: 244 IWGVGTMLKRRCAQAGIG-ELHPHQFRHTFAHQWKVNGGNEDDLMRITGWKSRQMLSRYA 302


>gi|28868299|ref|NP_790918.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|28851536|gb|AAO54613.1| integrase/recombinase XerD, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 296

 Score =  128 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 58/304 (19%), Positives = 122/304 (40%), Gaps = 23/304 (7%)

Query: 20  NWLQNLEI-ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            +L+      R     T ++Y   T++FL +        + + ++ ++S   +  +I + 
Sbjct: 2   RFLEFFTANIRN--PNTRRAYARATQEFLTWCQV-----VGVPSLTEVSPLHVATWI-EL 53

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR--ALNEKQALT 136
           + Q +   S+K+ L+ I+    +L   ++   +   ++R    ++   +   L   +A  
Sbjct: 54  QMQTLAAPSVKQRLAAIRHLFDWLVVGQVVPHNPAASVRGPSHTSRTGKTPVLEPLEARQ 113

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--GKG 194
           L+D++ + T         R+ A++ L+     RI  AL++  +++      L ++   KG
Sbjct: 114 LLDSIDICTPA-----GLRDRALIALMVFSFARIGAALAMKVEDVYIQNQRLWVRLKEKG 168

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF-----QRYIRQ 249
            K  ++P   S+   +  Y      D +    L    G   + L+            +R+
Sbjct: 169 GKQHVMPCQHSLEAYLHAYLVETGIDNDPKGPLFRTIGRGTEQLSVNALPQANAHAMVRR 228

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+  S   HT R +  T  L NGG L +  ++  H    TTQ+Y     +   D 
Sbjct: 229 RALAAGIKTSIGNHTFRATGITAYLKNGGTLENAAAMANHASTRTTQLYDRRRDEISLDE 288

Query: 310 MMEI 313
           +  I
Sbjct: 289 VERI 292


>gi|289751559|ref|ZP_06510937.1| integrase xerC [Mycobacterium tuberculosis T92]
 gi|289692146|gb|EFD59575.1| integrase xerC [Mycobacterium tuberculosis T92]
          Length = 292

 Score =  128 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 7/173 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +      + + L ++ G S  T ++Y  D R    FLA          ++  L+ + +R+
Sbjct: 1   MQAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRG------SSLDALTLSVLRS 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +++          +L R  S +K+F  +  +R +        ++  K   +LP  L + Q
Sbjct: 55  WLAATAGAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQ 114

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           AL  +       + +   +  R+  I+ LLY  G+R+SE   L   +I     
Sbjct: 115 ALRAM-AAAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHR 166


>gi|270297099|ref|ZP_06203298.1| phage integrase [Bacteroides sp. D20]
 gi|270273086|gb|EFA18949.1| phage integrase [Bacteroides sp. D20]
          Length = 368

 Score =  128 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 56/310 (18%), Positives = 120/310 (38%), Gaps = 41/310 (13%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           + +S +  K+  +++  L      S  T+  Y    +++  +               +++
Sbjct: 94  DAISEKNKKQLHDFIIWLTDNNDYSSHTVDIYYTSMKKYFEYA-------------NEVN 140

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
               R FI     +K+   +++  ++ I+ F K+LKK         + ++  K    L  
Sbjct: 141 MDNCRRFIKSLEEEKLSPATIRLRITAIEKFSKWLKK--------PIELKRPKIKRKLDV 192

Query: 128 --ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
                E +   L++ +    + +           + +L   G R+SE    T ++I+  +
Sbjct: 193 NNVPTEDEYNRLLEYLKAKNNKD-------YYFFIKVLGTTGARLSEFQQFTWEDIISGE 245

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            TL+  GKG+K R       +++    Y          + +  LF   +  P     F +
Sbjct: 246 VTLK--GKGNKYRRFFFQKQLQQEAKAY-------AKEHGKTGLFAVGKFGPFTQRGFSQ 296

Query: 246 YIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN-S 303
           +++   ++ G+      AH  RH FA   L    D+  +  +LGH  + TT+IY   +  
Sbjct: 297 HLKAWGKHCGIDSRKMHAHAFRHFFAKMFLKKNKDVIQLADLLGHGSVDTTRIYLQKSYD 356

Query: 304 KNGGDWMMEI 313
           +   D+   +
Sbjct: 357 EQKRDFNRNV 366


>gi|322836737|ref|YP_004210651.1| integrase [Acidobacterium sp. MP5ACTX9]
 gi|321165824|gb|ADW71524.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 327

 Score =  128 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 108/291 (37%), Gaps = 22/291 (7%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS-KRRTQKIGDRSLKRS 91
             + +++    RQ   F A +      I  + Q+    + AF+  + +TQ     + K  
Sbjct: 47  PSSRRAHREAVRQVSDFCAEH-----GIGDLAQVEPVHVAAFVETQLKTQ--SKPTAKLR 99

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR--ALNEKQALTLVDNVLLHTSHET 149
           L+ ++    ++   ++   +   ++R  K S    +   L   +A TL+D         T
Sbjct: 100 LAALRMLFDWMVVGQVIPTNPAHSVRGPKHSQRRGKTPVLQADEARTLID-----AIDTT 154

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVR 207
                R+ A++ L+      +  A+S+  ++      +  +R+  KG K   +P   ++ 
Sbjct: 155 SLPGLRDRALIGLMVYTFSCVGAAISMRVEDFFVQGRRGWVRLHEKGGKEHEMPTHHNLD 214

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV-----FQRYIRQLRRYLGLPLSTTA 262
           + + EY D      +    +      R   L           R IR+     G+      
Sbjct: 215 RYLEEYIDAAGIAEDRKGPMFRTTSGRSGELTGNSLLQSDVWRMIRRRALAAGIKTEIGC 274

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           HT R +  T  L NGG L   Q +  H    TT +Y   + +   D +  I
Sbjct: 275 HTFRATGITAYLKNGGRLEIAQQMAAHESARTTGLYDRRSDEVSLDEVERI 325


>gi|222080269|ref|YP_002540133.1| integrase/recombinase [Agrobacterium vitis S4]
 gi|221738914|gb|ACM39693.1| integrase/recombinase [Agrobacterium vitis S4]
          Length = 325

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 59/291 (20%), Positives = 112/291 (38%), Gaps = 24/291 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +   L  E G +  T+++Y     +FL F+            + +     + AF++   
Sbjct: 32  KFQAALRAE-GCAVSTVRTYGTLAGEFLSFVDTRGR-------LTECDARTVEAFVATL- 82

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLPRALNEKQALTL 137
                 +++++ L  ++SFL+Y +++       +  +  +K S    +P   +      +
Sbjct: 83  -SGYQAKTVEQKLCAVRSFLRYAERQGQVNADVLKAVPAVKSSKHARVPSVWDPADVARI 141

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D        +      R+ AI+ L+   GLR  +   L   +     + L ++      
Sbjct: 142 LD-----AIDQGNPSGKRDYAIITLVTRLGLRSIDVKRLELDDFDWPGNRLWVRQTKTGH 196

Query: 198 RIV-PLLPSVRKAILEYYDLC-----PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           RI  PLL  V  AI+ Y            + L    P+        L+  +  ++ R  R
Sbjct: 197 RIQLPLLKDVGWAIINYIRHGRPSTDCRQVFLRHTTPVGPFSDQDHLH-QILCKHARVAR 255

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             L        H+LRH+ AT L+  G  +  I  ILGH  + TT +Y   +
Sbjct: 256 VTLSDHRRHGMHSLRHTLATRLMEGGTPIEEIADILGHQSVGTTGVYLKTS 306


>gi|226366649|ref|YP_002784432.1| phage integrase family protein [Rhodococcus opacus B4]
 gi|226245139|dbj|BAH55487.1| phage integrase family protein [Rhodococcus opacus B4]
          Length = 286

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 64/290 (22%), Positives = 106/290 (36%), Gaps = 21/290 (7%)

Query: 10  VSFELLKERQNWLQ-NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++  L    Q +       +R LS  T+++Y       L F+A  T+       +  + +
Sbjct: 1   MNHRLAPILQRYFTTYALTQRALSPATIRTYRDSWALLLTFVAERTQIPPHALELAHIDH 60

Query: 69  TEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLK---KRKITTESNILNMRNLKKSNS 124
             + AF+      +     +    L+ IK+ L +        + T + +  +   K    
Sbjct: 61  RCVTAFLDHLENERGNSIATRNLRLAAIKAVLAFECATMPEHLETIAAVQAIPVKKHPRP 120

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
               L   Q   L+D +       T W   R+ A+  L    GLR+SE +SLT  ++   
Sbjct: 121 QLSYLTATQVKALLDGI-----DTTTWTGRRDQAMFTLAAHTGLRVSELISLTVDSVHLG 175

Query: 185 -QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
             + +   GKG K R  PL  +    +  Y          +    LF   RG+PL+    
Sbjct: 176 TAAHVACTGKGRKHRATPLTTATAALLKTYLHERH----THPGHALFPNPRGEPLSVDAI 231

Query: 244 QRYIRQLRRYLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
            + +R   R              T HTLRH+ A   L+ G D   I   L
Sbjct: 232 GQRLRTHVRRAARACPELAGTHVTVHTLRHTAAMRFLAAGIDTAVIALWL 281


>gi|296328607|ref|ZP_06871124.1| integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296154206|gb|EFG95007.1| integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 338

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 126/298 (42%), Gaps = 26/298 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTI----RQLSYTEIRAFISKR-RTQKIGDR 86
           S+ T++ Y    + FL F+ +  E   +I  +    + +   ++ A+I      +K+   
Sbjct: 43  SEKTVKDYMFHLKDFLHFV-YDGENDFSISEVIPLMQDIEKEDVEAYIVHLFEDRKLKKT 101

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL--NEKQALTLVDNVLLH 144
           S+   LS +KS  K L+   +  ++ +  ++  K + ++   L  +      ++    + 
Sbjct: 102 SVNTILSALKSLYKELESNGL--KNPVKYIKLFKVNRNIENVLKVSIDDIRKIIGLYKID 159

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR---IQGKGDKIRIVP 201
           +  +      RN  ILY L+  G+R  E L+L  ++ +  +       IQ K  K    P
Sbjct: 160 SEKK-----YRNITILYTLFYTGMRSKELLTLQFKHYLKREDEYFFKLIQTKSGKDVYKP 214

Query: 202 LLPSVRKAILEY----YDLCPFDLNLNIQLPLFRG--IRGKPLNPGVFQRYIRQLRRYLG 255
           +  S+ K + EY      +   DL    +  +F    +   PL+       I+ + + +G
Sbjct: 215 IHKSLVKKLEEYKKYLISMYSLDLKDLDEKYIFSTSVLDNTPLSYRSLNAIIQDMGKLIG 274

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                + H +RH+ AT L  +G D+  I+  LGH     T++Y N  S      + ++
Sbjct: 275 --KDISPHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARSILEKKVLEKL 330


>gi|148244011|ref|YP_001220249.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|146400574|gb|ABQ29107.1| phage integrase family protein [Acidiphilium cryptum JF-5]
          Length = 403

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 114/291 (39%), Gaps = 24/291 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N+   L  +RGLS+ T+  Y    R    FL     E  T+    +L   +   FI    
Sbjct: 111 NFETYLVKQRGLSQRTI--Y-HTLRFADRFLDHRFGE--TMVDPGRLRPADAIGFIEHVL 165

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS----LPRALNEKQAL 135
                D+++    + ++ FL+YL     T  +  L++   K +      LPR L+     
Sbjct: 166 AGARRDKTIA---THVRIFLQYLFGCGATATNLALSV--PKTARRWGARLPRHLSPNGVE 220

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            ++      +  + +   AR+ A+L L+   GLR +E +++   +I      L ++GKG 
Sbjct: 221 AVL-----ASVRDNQRHGARDYAMLLLMARLGLRAAEVIAIQLDDIDWRAGELLVRGKGK 275

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
               +P+   V  A+  Y                 R       +  +    ++   +  G
Sbjct: 276 LHDRLPITVEVGDALSRYLREERGPATCRTMFVTHRAPHRPFKDGQIVNAILKDALKATG 335

Query: 256 LPLSTTA----HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                T     H LRHS AT L++ G  L  +  +L H   S+T IY  ++
Sbjct: 336 -QKPVTPYVGSHLLRHSLATRLVNTGASLDEVGDVLRHRSRSSTMIYARLD 385


>gi|298480948|ref|ZP_06999143.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           D22]
 gi|298272971|gb|EFI14537.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           D22]
          Length = 368

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 112/298 (37%), Gaps = 41/298 (13%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            ++ +L      S  T+  Y    +++  +               +++    + F+    
Sbjct: 106 EFIVHLTDSNDYSPHTVDIYYTSLKKYFEYA-------------NEVNMDNCKRFVKMLE 152

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR--ALNEKQALTL 137
                 ++++  ++ ++ F K++KK         + ++  K    L       E +   L
Sbjct: 153 ENSFSPQTIRLRITALEKFSKWIKK--------PIELKRPKMKRKLDVSNVPTEDEYNRL 204

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++ +   ++ +           + +L   G R+SE L  T ++I+     + ++GKG+K 
Sbjct: 205 LEYLKTKSNKD-------YYFFIKVLGTTGARLSEFLQFTWEDIV--AGEVTLKGKGNKY 255

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R       +++ +  Y       +  N +  LF   R  P+      + ++    + G+ 
Sbjct: 256 RRFFFQKQLQREVKIY-------VAENNKTGLFAVGRYGPITQRGLAQSMKVWGSHCGID 308

Query: 258 -LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN-SKNGGDWMMEI 313
                 H  RH FA   L    D+  +  +LGH  + TT+IY   +  +   D+   +
Sbjct: 309 SKKMHPHAFRHFFAKMFLKKTKDVIQLADLLGHGSVDTTRIYLQKSYDEQQRDFNKNV 366


>gi|304384214|ref|ZP_07366629.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
 gi|325270616|ref|ZP_08137214.1| tyrosine type site-specific recombinase [Prevotella multiformis DSM
           16608]
 gi|304334715|gb|EFM00993.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
 gi|324987011|gb|EGC18996.1| tyrosine type site-specific recombinase [Prevotella multiformis DSM
           16608]
          Length = 387

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 66/329 (20%), Positives = 123/329 (37%), Gaps = 28/329 (8%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           +   +P +   EL +    + + L+  R LSK T+++++   + F+ FL           
Sbjct: 62  QSRPMPTLA--ELYQSVCEYKEELQG-RTLSKATVRAFKDSYKSFVHFLQVRDRADCMPT 118

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            + +    + R F+   R     + S+   L  +   ++   + +   E     +     
Sbjct: 119 EVDKTLLEDYRLFM--LRDLGNKESSVGNRLRHLHQVIRKALQERYVREDPFELID---- 172

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              +     E+ ALT  D   L      + +D     I  L    GL  S+   L   ++
Sbjct: 173 ---IETPTYERNALTADDLQKLLAYRPHRSVDNHCRLIFLLGCFTGLAFSDLKKLRMDDV 229

Query: 182 M---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
               D +  + +     + R +  L  + + IL        +     + P          
Sbjct: 230 YTFGDGRRYISLCRTKTQNRSIVPLLPIAEKILAIVSPGRREGLFFREFP---------- 279

Query: 239 NPGVFQRYIRQLRRYLGLPLS--TTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTT 295
           +   F R I+++    GLP     T+HT RH+FAT   L NG  + ++  +LGH  +STT
Sbjct: 280 SNSNFNRTIQEICIKAGLPPHTQATSHTARHTFATTICLENGLPIETVSKMLGHRFISTT 339

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           +IY  V        M  +    H  + +K
Sbjct: 340 EIYARVTKSKIAKEMQPLMGSEHTRVLRK 368


>gi|269928745|ref|YP_003321066.1| integrase family protein [Sphaerobacter thermophilus DSM 20745]
 gi|269788102|gb|ACZ40244.1| integrase family protein [Sphaerobacter thermophilus DSM 20745]
          Length = 376

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 125/333 (37%), Gaps = 40/333 (12%)

Query: 2   EGNNLPEIVSFELLKER-QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           +   LP +   E +K+  + WL+++     L   T +SY     + L          +  
Sbjct: 56  QQYGLPVVSERETVKDYLERWLEDVARP-SLRPRTYESYRGIITRHLT-------PALGR 107

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             + +LS  +++ +I++++   +  R++    + ++  L    +  + + +        K
Sbjct: 108 TRLARLSPDQVQRYINQKQAAGLSPRTVTYHRAVLRKALNDAMRWGLVSRNAAALAAPPK 167

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +     R L  ++A   +D               R  A+  +    GLR  EAL L   +
Sbjct: 168 QDRPPARFLTPEEARHFLD----------TVAGHRLEALFTVALAVGLRQGEALGLRWDD 217

Query: 181 IMDDQSTLRIQ---------------GKGDKIRIVPLLPSVRKAILEY----YDLCPFDL 221
           +  +  TL ++                     R V L     +A+ E+     +      
Sbjct: 218 VDLEAGTLTVRYALQRSGGALVLVEPKTQRSRRTVALPAVALRALREHRTRQLEERIAAP 277

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
             + Q  +F    G  ++     R   +LR   GLP     H LRH  A+ L++ G + R
Sbjct: 278 YWDDQGFVFTSTIGTAIDARNLTREFHRLRAEAGLPW-LRFHDLRHGCASLLMAQGVNPR 336

Query: 282 SIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
            +  ILGH +++ T   Y++V      D   +I
Sbjct: 337 VVMEILGHSQITLTLGTYSHVAPTLARDAADKI 369


>gi|251778719|ref|ZP_04821639.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243083034|gb|EES48924.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 380

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 57/315 (18%), Positives = 114/315 (36%), Gaps = 38/315 (12%)

Query: 18  RQNWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
             ++L     E   +     T Q+Y+        F+    +  + I  ++QL+Y  ++ F
Sbjct: 64  FSDYLDYWFNEYVMKNCKYNTQQTYKT-------FININLKPNLGIYKLKQLNYAGLQEF 116

Query: 75  ISKRRTQKIGDRSLKRSLSGI-KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++K+        +L R  S I  S    +    +   +    +       ++PR  N  +
Sbjct: 117 LNKQYAHGYSKNTLARLRSIITHSLEMAVFPYDLIKVNPAQYL-------TIPRFDNISK 169

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG- 192
              ++     +   E           L + +  G+R+ E   LT   +  +  T++++  
Sbjct: 170 KNIVISIENFNKITERFPCGTSFYIPLQIAFNTGMRVGEVCGLTWDCVDFENKTIKVEKI 229

Query: 193 ---------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                              IR + +  ++   +  +      +     +           
Sbjct: 230 LIFKTKQGYEFSTPKTKKSIRTISIGDTLINILKAHKKWQEQNKQEYGEYYNDNNFVCTK 289

Query: 238 LNPGVFQRY-IRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            N        +R L + +   L +    H+LRH+ AT LL  G +++ IQ  LGH  LST
Sbjct: 290 ENGSFVTMTSLRYLSKIVNMELQIEFNFHSLRHTHATMLLEGGANIKDIQDRLGHSSLST 349

Query: 295 TQ-IYTNVNSKNGGD 308
           T  IY++V +K   D
Sbjct: 350 TMNIYSHVTNKMKND 364


>gi|217968816|ref|YP_002354050.1| integrase [Thauera sp. MZ1T]
 gi|217506143|gb|ACK53154.1| integrase family protein [Thauera sp. MZ1T]
          Length = 411

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 117/299 (39%), Gaps = 13/299 (4%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P I    + +    +   LE ER L+  T+  Y    R+FL  +    E      ++  +
Sbjct: 107 PPIAPTAVEQLETEFRYYLERERRLAPATVFHYLEFARRFLAQMVPKGE-----ASLAHV 161

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNLKKSNS 124
              ++  F+ +   +    +  K   + ++SFL+Y + R +        +         S
Sbjct: 162 QAADVVDFVQREAARLHHAKRAKLMTTAVRSFLQYARYRGLIEADLKPSVPAVANWSMAS 221

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LPRAL+  +   L+ +    T+     +  RN AIL LL   GLR  E  +LT  +I   
Sbjct: 222 LPRALSAVELQRLLASCERGTA-----VGRRNWAILLLLARLGLRAGEVTALTLDDIDWA 276

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
            + L IQG G     +PL   V  A+ +Y                 R       +     
Sbjct: 277 AAELCIQGAGVSANRLPLPHEVGAALADYLRDGRPACTSRRVFVRMRAPTRGFKSSSAVS 336

Query: 245 RYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             +R+     GL P    AH LRH+ AT +L  G  L  I  +L H    TT IY  V+
Sbjct: 337 TVVRRALARAGLDPAHHGAHLLRHTVATQMLRQGASLAEIGELLRHRSPQTTMIYAKVD 395


>gi|299137463|ref|ZP_07030645.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
 gi|298600868|gb|EFI57024.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
          Length = 430

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 67/308 (21%), Positives = 123/308 (39%), Gaps = 22/308 (7%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P+ + FE L   + +  +L   RGL   T+++YE   R FL F +           +  +
Sbjct: 129 PQEMWFEEL--LRAYSHSLVYNRGLVHRTVETYESKARTFLKFFSRSNH------NLSGI 180

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL- 125
           S  ++ AF+ ++  ++    ++      I+SFL++ + R          +++ +   +  
Sbjct: 181 SLLDVDAFMQEKVMEEWKAEAIASHCQAIRSFLRFAESRNWCDRGIHQGIKSPRVPRNTG 240

Query: 126 -PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
             +     Q   L+ +     + E +       A+L L    GLR SE + L  ++    
Sbjct: 241 ESKGPTWPQVKKLLRSFKGQKASERRA-----KAMLMLCAIYGLRASEVIGLQLEDFDWR 295

Query: 185 QSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPG 241
             T  ++  K   ++  P+   V +AIL Y           +   LF  +R     ++  
Sbjct: 296 NETFMVRRAKRGGVQHFPMEYEVGEAILAYLKQDRPRCASRL---LFVSLRAPYVAVSTT 352

Query: 242 VFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              R +    R  G+ L     H+LRH+ AT LL  G  L  I   LGH  L +  IY  
Sbjct: 353 SLWRAVGPRLRSFGVQLNHVGVHSLRHACATRLLHKGSSLHQIADFLGHRDLKSVSIYAR 412

Query: 301 VNSKNGGD 308
            + ++   
Sbjct: 413 CDVRSLRK 420


>gi|294787223|ref|ZP_06752476.1| putative phage integrase family protein [Parascardovia denticolens
           F0305]
 gi|315227229|ref|ZP_07869016.1| possible integrase [Parascardovia denticolens DSM 10105]
 gi|294484579|gb|EFG32214.1| putative phage integrase family protein [Parascardovia denticolens
           F0305]
 gi|315119679|gb|EFT82812.1| possible integrase [Parascardovia denticolens DSM 10105]
          Length = 280

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 62/309 (20%), Positives = 124/309 (40%), Gaps = 47/309 (15%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E +     W++ L I RG +  T++++  +  +  + L          + + Q+S  +I 
Sbjct: 12  EWVPLLDQWVKYLRI-RGCTPATIENWWYNVSRLALILN---------KPVYQISDEDII 61

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            ++     + +    ++ + +   SF  YL    +  ++ +  +  +K+     R  + +
Sbjct: 62  DYM----DRGLSANGIRNNRNAFNSFFDYLITAGLREDNPLAALPKVKRDKHKMRPASRQ 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRI 190
           Q    + +            D     ++ +L   G+R SE   +  ++++ +    T+ I
Sbjct: 118 QVEKGLHD-----------PDPTARLMVMMLADLGVRRSELAQIRKEDLIQEDKYTTIII 166

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKGDK RI+PL   +++ +                  LF G     ++P    RY+++ 
Sbjct: 167 HGKGDKDRILPLSQRLQQILTAM-----------PDGYLFPGRFHGHVHPDTVYRYVKRA 215

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                     T H +R  FAT L    GD   +Q +LGH  L+TTQ Y      +    +
Sbjct: 216 -------TGATPHAIRRRFATDLWHATGDAVKVQGMLGHESLATTQAYIYSTQDDLKQAV 268

Query: 311 ME--IYDQT 317
            +  IY Q 
Sbjct: 269 DQLVIYRQH 277


>gi|262067553|ref|ZP_06027165.1| integrase/recombinase [Fusobacterium periodonticum ATCC 33693]
 gi|291378728|gb|EFE86246.1| integrase/recombinase [Fusobacterium periodonticum ATCC 33693]
          Length = 328

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 64/301 (21%), Positives = 127/301 (42%), Gaps = 29/301 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTI----RQLSYTEIRAFISKR-RTQKIGDR 86
           S+ T++ Y    + FL F+ +  E   +I  +    + +   ++ A+I      +K+   
Sbjct: 33  SEKTVKDYMFHLKDFLHFV-YEGENDFSISEVIPLMQDIEKEDVEAYIVHLFEDRKLKKT 91

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL--NEKQALTLVDNVLLH 144
           S+   LS +KS  K L+   +  ++ +  ++  K + ++   L  +      +++   + 
Sbjct: 92  SVNTILSALKSLYKELESNGL--KNPVKYIKLFKVNRNIENVLKVSIDDIRKIIELYKID 149

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR---IQGKGDKIRIVP 201
           +  +      RN  ILY L+  G+R  E L+L  ++ +  +       +Q K  K    P
Sbjct: 150 SEKK-----YRNITILYTLFYTGMRSKELLTLQFKHFLRREDEYFFKLVQTKSGKDVYKP 204

Query: 202 LLPSVRKAILEY----YDLCPFDLNLNIQLPLFRGI--RGKPLNPGVFQRYIRQLRRYLG 255
           +  S+ K + EY     ++   D     +  +F        PL+       I+ + +   
Sbjct: 205 VHKSLVKKLEEYRSYLMNMYSLDSKDLDEHYIFATSVSNNSPLSYRSLNVIIQDMGKL-- 262

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN---VNSKNGGDWMME 312
           +    + H +RH+ AT L  NG D+  I+  LGH     T++Y N   V  K   + + E
Sbjct: 263 IEKDISPHNIRHAIATELSLNGADILEIRDFLGHSDTKVTEVYINARSVLEKKVLEKLPE 322

Query: 313 I 313
           I
Sbjct: 323 I 323


>gi|310642299|ref|YP_003947057.1| integrase family protein [Paenibacillus polymyxa SC2]
 gi|309247248|gb|ADO56815.1| Integrase family protein [Paenibacillus polymyxa SC2]
          Length = 366

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 70/344 (20%), Positives = 117/344 (34%), Gaps = 47/344 (13%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQ 65
            +L    Q ++     +  LS  TL  Y  D   F  +L      A  T  ++T++ +  
Sbjct: 17  PDLPWYVQQFMDYKLPD--LSPSTLLEYVRDYEAFFSWLRSEGLSAGETNAQVTLEELET 74

Query: 66  LSYTEI---RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           L    I   R F+S +R       ++ R LS ++S   YL +         L  RN+   
Sbjct: 75  LHMDSITGFRLFLSTKREGSNSRITISRKLSSLRSLFHYLSQIAEDENFYPLLKRNIMAK 134

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDA------------------------RNSA 158
             + R    K     +   +L      ++I                          R++ 
Sbjct: 135 VEIKRVHKPKDTAAKLKGKILEEEELLEFIGYIYEGYGQDLADNKQALYSYELNKERDAC 194

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV----PLLPSVRKAILEYY 214
           I  L+   GLR+SE ++L   ++  +   L +  KG+               +  +  Y 
Sbjct: 195 IASLILNSGLRVSEIVNLNMDDLDINNKLLYVYRKGNNDETFKTPVYFREQSKDDLALYL 254

Query: 215 DLCPFDLNL-NIQLPLFRGIRG-----KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            L          +  LF          K +     Q  I +  +  G P   T H LRHS
Sbjct: 255 SLRHTRYRAPKKEKALFVARPNGSTEGKRMTKRAIQAMIIKYAKRFGKPY-LTVHKLRHS 313

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           FAT       D+   +  LGH    TT++Y ++  K     +  
Sbjct: 314 FATDYYLQN-DIYKTKEQLGHASTETTEVYAHLTDKTMSQAIER 356


>gi|222823741|ref|YP_002575315.1| integrase/recombinase [Campylobacter lari RM2100]
 gi|222538963|gb|ACM64064.1| integrase/recombinase [Campylobacter lari RM2100]
          Length = 355

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 133/294 (45%), Gaps = 25/294 (8%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y    ++   +L FY      + +++Q+    +   ++   +  + D S K     +
Sbjct: 73  VNTYFNPLKKLYEYLLFYK-----LYSLKQIDEELLVEILASI-SASLSDASKKNYRIAV 126

Query: 96  KSFLKYLKKRKITTESNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTSH 147
            +F  +L K+    +   +   NLK        +   LP  ++E +    +D +    + 
Sbjct: 127 INFFAFLDKQNEEEQKAHIFDINLKNWAGISGSRGVKLPEYMSEDEVGKFLDAID---TI 183

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ--STLRIQGKGDKIRIVPLLPS 205
           + K    RN  I+ ++   G+R+SEA+++  ++I ++     +RI+ KG+K R+V +   
Sbjct: 184 DFKNNTIRNRLIIKIIIFTGIRVSEAINIKLKDISEENDLYIIRIRAKGNKYRVVMIKKE 243

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHT 264
           + + +L+   +      L+    LF    GK L      R + Q+    G+      AH 
Sbjct: 244 LIEHLLKDVRVNY----LSYDGLLFVNRNGKALTQAYISRIVEQILFKAGIRKQKNGAHM 299

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           LRH+FAT L     DL  +Q  LGH  L+T++IYT+ +++       E+  + H
Sbjct: 300 LRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNEKLKLA-AEVAKKLH 352


>gi|313903435|ref|ZP_07836826.1| integrase family protein [Thermaerobacter subterraneus DSM 13965]
 gi|313466256|gb|EFR61779.1| integrase family protein [Thermaerobacter subterraneus DSM 13965]
          Length = 226

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 102/226 (45%), Gaps = 15/226 (6%)

Query: 102 LKKRKITTESNILNMRNL---KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR--- 155
           +    +        +      ++   LP  L E +A  L+  VL       +        
Sbjct: 1   MVAEGVLPRDPFAGLERPVRGERHKRLPVYLAETEAERLLRTVLSDQGLTPRQKAHHARL 60

Query: 156 ---NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
              + A++  L   GLRISEA+ L   ++  D+ TLR+ GKGDK R++PL    ++A+L 
Sbjct: 61  KERDHALVTTLLCQGLRISEAVGLRYGDVDFDEDTLRVIGKGDKERLLPLHRRTKEALLR 120

Query: 213 YYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           Y    P        Q P++  + G+PL     Q  +++     GL    +AH LRH+F T
Sbjct: 121 YLATWPGRKKPKAPQDPVWWTLTGQPLTKNAAQVAVKRHLVRAGL-WRASAHKLRHTFGT 179

Query: 272 HLLSNGGDLRSIQSILGHFR----LSTTQIYTNVNSKNGGDWMMEI 313
            L   G DL  I+ +LGH       +TTQIY +V  +   + + +I
Sbjct: 180 RLAEAGVDLLVIKDLLGHATVATTQATTQIYAHVAQRRLREAVEKI 225


>gi|239624491|ref|ZP_04667522.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520877|gb|EEQ60743.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 281

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 64/319 (20%), Positives = 119/319 (37%), Gaps = 48/319 (15%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+ N    I+  ++L + + +L N+E     S  T+  Y  D   F+ +L+         
Sbjct: 1   MQENK---IIKNDIL-DFKKYLINME----RSARTIDKYCRDVAAFIQYLSPG------- 45

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
                ++  ++  +    +       S    L+ +  F  Y    +         +   K
Sbjct: 46  ---EMVTREKVIEYKGYLQ-GSYKVSSANSMLAALNCFFHYKNWDRY-------RVSQFK 94

Query: 121 KSNSLP----RALNEKQALTLVDNVLLHTSHETKWIDARNSAIL-YLLYGCGLRISEALS 175
               L     R L +++   LV   L        ++D +  A++   +   G+RISE   
Sbjct: 95  VQRHLMGGEERRLTKEEYARLVTTAL--------YLDNQRLAMIMETIGNTGIRISELPF 146

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           +T + +   +  +  +GK    R + L+  +R  +  Y        N     P+F    G
Sbjct: 147 ITVEALDAGRVEIYNKGKF---RTIFLIEKLRCRLRGYC-----RENGLTSGPVFVTSGG 198

Query: 236 KPLNPGVFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
             +N       +++L    G+P      H LRH FA        DL  +  ILGH  + T
Sbjct: 199 MAVNRSNIWAEMKRLCIKAGIPEQKVFPHNLRHLFAYTYYGVDKDLVHLADILGHSSVET 258

Query: 295 TQIYTNVNSKNGGDWMMEI 313
           T+IYT    +   + M ++
Sbjct: 259 TRIYTISTGEEQQEAMQKM 277


>gi|322376313|ref|ZP_08050806.1| integrase/recombinase XerD [Streptococcus sp. M334]
 gi|321282120|gb|EFX59127.1| integrase/recombinase XerD [Streptococcus sp. M334]
          Length = 212

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 61/196 (31%), Positives = 90/196 (45%), Gaps = 8/196 (4%)

Query: 120 KKSNSLPRALNEKQA----LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +    LP+ +         + L   V++  +   K    RN  I+ LL   G+RISE   
Sbjct: 6   RTEKVLPKTIPHDILKSIFIYLEQKVIVSKTDYQKQHAERNLLIISLLLSTGIRISELCH 65

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           +  ++I     TL I GKG K RI+ L       +LE Y     +        LF G   
Sbjct: 66  IRLKDINLSNKTLHIIGKGKKERILFLGDQTTFNLLETYINKTRN---ESNDFLFPGKHS 122

Query: 236 -KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            KPL+    +  ++++     L  + T H  RHSFAT LL +  D+R IQ ILGH  +S 
Sbjct: 123 LKPLSEQSVRLILKRIVEQNSLSRTITPHMFRHSFATMLLDSDVDIRYIQQILGHSSISV 182

Query: 295 TQIYTNVNSKNGGDWM 310
           TQIYT+V+     + +
Sbjct: 183 TQIYTHVSHSKQKEIL 198


>gi|300361712|ref|ZP_07057889.1| site-specific tyrosine recombinase XerS [Lactobacillus gasseri
           JV-V03]
 gi|300354331|gb|EFJ70202.1| site-specific tyrosine recombinase XerS [Lactobacillus gasseri
           JV-V03]
          Length = 356

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 65/352 (18%), Positives = 135/352 (38%), Gaps = 42/352 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY------T 54
           ME N    ++  EL     ++++   +    S  T   Y  + R+F  +L         +
Sbjct: 1   METNKYLSLIKQEL-ANMPDFIKEYNLGTTHSLTTTYQYLTEIRRFFDWLRQNKLSTASS 59

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKI------GDRSLKRSLSGIKSFLKY------- 101
            ++I + T++ +   ++  +I   +  K          ++ RS++ ++S  K+       
Sbjct: 60  NKEIELVTLKDMQRNDVMLYIHHLKHTKNQQGRLNSPTTINRSINALRSLYKFLTITSDN 119

Query: 102 LKKRKITTESNILNMRNLKKSNSL---PRALN--------EKQALTLVDNVLLHTSHET- 149
                    + +L + +L  + +L      L         + Q L  ++N   H  ++  
Sbjct: 120 NHGEPYFDRNVMLKINSLNDTKTLNYRAHVLESHMYMGNLKYQFLDFIENEYEHKCNKQS 179

Query: 150 ----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
               K    R+ AI+ L+ G G+R+SE +S+  +NI      L +  KG +   VP+   
Sbjct: 180 LPSFKKNHERDIAIIALILGTGIRVSECVSVNVRNINLKDEMLDVIRKGGQKDSVPIADW 239

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLSTT 261
               + +Y ++     + +     F   R       +     ++ + +     G     T
Sbjct: 240 TIPYLKKYQEIRADRYHADRDNIAFFLTRWHGKTRRMTANAVEKMVNKYSAAFG--KPLT 297

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            H LRH+ A+ L     D   +   LG    + T +YT+V+ K     + +I
Sbjct: 298 PHKLRHTLASELYEVTKDQVLVAQQLGQKGTTATDLYTHVDQKKQKAALNKI 349


>gi|86150256|ref|ZP_01068483.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|88597569|ref|ZP_01100803.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|218562491|ref|YP_002344270.1| DNA recombinase [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|85839372|gb|EAQ56634.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|88190161|gb|EAQ94136.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|112360197|emb|CAL34991.1| DNA recombinase [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284926106|gb|ADC28458.1| DNA recombinase [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315926491|gb|EFV05873.1| phage integrase family protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 354

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 68/283 (24%), Positives = 127/283 (44%), Gaps = 24/283 (8%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y    ++   +L FY      + +++Q+    I   ++   T  + D S K     +
Sbjct: 73  VNTYFNPLKKVFEYLNFYK-----LYSLKQIDEELIVEVLAS-ITGALSDASKKNYRIAV 126

Query: 96  KSFLKYLKKRKITTESNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTSH 147
            +F  +L K+    E   +   NLK        K   LP  +++++    +D +    + 
Sbjct: 127 INFFDFLDKQNEEDEKAHIFDINLKNWAGIAGSKGVKLPEFMSKEELKKFLDAIE---NA 183

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ--STLRIQGKGDKIRIVPLLPS 205
           + K    RN  I+ ++   G+R+SEA+++   +I ++     +RI+ KG+K R+V +   
Sbjct: 184 DFKNNTIRNKLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVVMIKKE 243

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHT 264
           +   +L+   +     +      LF   +G PL      R + QL    G+      AH 
Sbjct: 244 LIYDLLKNVSINYISKDA----LLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHM 299

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           LRH+FAT L     DL  +Q  LGH  L+T++IYT+ ++    
Sbjct: 300 LRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLK 342


>gi|292905278|ref|YP_003541149.1| phage integrase [Anabaena variabilis ATCC 29413]
 gi|75705016|gb|ABA24691.1| Phage integrase [Anabaena variabilis ATCC 29413]
          Length = 309

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/274 (20%), Positives = 117/274 (42%), Gaps = 19/274 (6%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T++    D    L               +R      IRA +     +K    +  + 
Sbjct: 31  SRRTMKQ-ALDAIALLATNQTCDAMNCPWGLLRYQHTMAIRAEL----MEKYAPATANKM 85

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPR--ALNEKQALTLVDNVLLHTSH 147
           L+ ++  LK  ++    T  +     ++K+  S  LP+  AL+  +   L++  +     
Sbjct: 86  LAALRRVLKEAQRLGQMTPEDYAKAADIKRVKSSGLPKGRALSSDELGKLLNVCV----E 141

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSV 206
           +      R++A+L +L   GLR  E ++L   ++  ++ +++++G KG K R+V    S 
Sbjct: 142 DESIFGVRDAAMLMILRV-GLRRGEVVNLDLADLDLNEGSVKVRGGKGRKDRVVFFPESA 200

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFR--GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
              + ++  +   D +  + LP+ +   +  + L+       +       G+  + T H 
Sbjct: 201 IAYLQKWVKIRGDDSSP-LLLPISKSGNLVWRRLSDQAVLSIMLGRGEEAGIE-NFTPHD 258

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            R +FA  LL  G D+ ++Q ++GH   +TT  Y
Sbjct: 259 FRRTFAGDLLDAGVDIVTVQKLMGHADPATTAKY 292


>gi|260907656|ref|ZP_05915978.1| phage integrase family protein [Brevibacterium linens BL2]
          Length = 265

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 60/261 (22%), Positives = 98/261 (37%), Gaps = 39/261 (14%)

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR----------------- 117
           ++ +R  +    ++ R L+ I     +   R    ++ +   R                 
Sbjct: 1   MTGQRLDRYAATTINRRLAAISGLFTFAGLRDPDAKNPVPRGREARWLASGEKSGMLAHT 60

Query: 118 ----------NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
                      L++   LP AL+   A  LV          T     R+ A+  L+  CG
Sbjct: 61  RRRHQPRSALRLREPKKLPVALSTADATKLV----------TSLRTWRDRAMAGLMLWCG 110

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           LR  E L+L  +++      + + GKG K R VPL   V   I  Y        + +   
Sbjct: 111 LRSCEVLALHVKDVDIGGRWITVTGKGAKQRRVPLDADVASVIDVYLLAERPASDSDQLF 170

Query: 228 PLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
            + +G  RG+ L     +   R  R   G+      H LRH+F T L   G DL  +Q++
Sbjct: 171 LVAKGTHRGQGLTAAGLRTIFRYHRDLTGVA-GGHPHALRHTFGTVLAEAGVDLAVMQAL 229

Query: 287 LGHFRLSTTQIYTNVNSKNGG 307
           LGH  + TT  Y ++   +  
Sbjct: 230 LGHAHVDTTARYVHLAPVHVK 250


>gi|320450087|ref|YP_004202183.1| transposase [Thermus scotoductus SA-01]
 gi|320150256|gb|ADW21634.1| transposase [Thermus scotoductus SA-01]
          Length = 380

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 67/335 (20%), Positives = 126/335 (37%), Gaps = 44/335 (13%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           E   LP      L    + WL     E+ L+  TL +Y  +   FL +L          +
Sbjct: 54  EKGLLPRRDPRTLQAFAEAWLA--RKEKSLAAKTLANYRREVGYFLKYLGQ--------K 103

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            ++ +   +IR  + +   + +G R+ K++L  +++  K     ++        +R   K
Sbjct: 104 RLQDIRPLDIRQALDRMAAEGLGVRAQKKALLHLRALFKEALGLELVARDPTAAVRL--K 161

Query: 122 SNSLPRA---LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           +   P+A   L   +A  L+            W        L L    GLR  EAL L  
Sbjct: 162 AERRPKAGRSLEPHEAEALLAAFDA-------WPTWGVGMALRLCLALGLRAGEALGLKW 214

Query: 179 QNIMDDQSTLRIQGKGDK---------------IRIVPLLPSVRKAILEYYDLCP---FD 220
            +I  +  TL ++                     R +P+  +    + + ++        
Sbjct: 215 GDIDLEAGTLSVRRAWTCLGGRGHLTTPKTSRAQRTIPVPRATLGRLRDRWETLVAQGLR 274

Query: 221 LNLNIQLPLFRGIRGK--PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
                +  +F   +    PLNP      +R++   LG+P     H LRHS+ + LL+NG 
Sbjct: 275 PKDLKEWWVFPSEKDPSRPLNPHSLNHALRKMTAKLGIP-PVRVHDLRHSYGSLLLANGA 333

Query: 279 DLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMME 312
            L  +   +GH   + T  +Y ++ +     W+++
Sbjct: 334 PLELVAERMGHASPNVTLSVYRHLLAHERTAWVVD 368


>gi|326791264|ref|YP_004309085.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326542028|gb|ADZ83887.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 314

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 67/322 (20%), Positives = 136/322 (42%), Gaps = 35/322 (10%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + K  Q ++ +LE E  LS  T+++Y  D  QF  +           + +  L++ + + 
Sbjct: 3   IEKAIQYFISSLEAE-QLSSHTIKAYLQDLNQFKNWTQK--------KEVDDLNFEDFQD 53

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK-KSNSLPR-ALNE 131
           +  +    K+   S+KR    +  F K+  ++K+ TE     +  ++ K N +P+  L+ 
Sbjct: 54  YFIE--ISKLKMTSIKRKRVVMHRFFKFCYRKKLCTEKLHEYIDPIRSKKNVVPKEVLSR 111

Query: 132 KQALTLVDNVLLHTS-----------HETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           ++   + D +                    +   RN  ++ +L   G R  E ++L  Q+
Sbjct: 112 EEISLIFDFLKKEEKQYKLKVNNTYYDYLYYCSLRNQLLISILLYTGCRAHEVVALKKQD 171

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-----LNIQLPLFRGI-- 233
           I   Q+T+ +  KG K   VP+   ++KA+  Y +            L     LF     
Sbjct: 172 INLLQNTITLFTKGGKYNQVPIHDELKKALDNYNESISTLSLGLQNLLQESHYLFPSKTD 231

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
               +        +++L    G      AH  RH+FA++ ++   D+ +I S++ H   S
Sbjct: 232 SNNYMPTRTLHDLMKKLSAATG--RHIHAHLFRHTFASYCIAANMDISTISSLISHSNPS 289

Query: 294 TT-QIYTN-VNSKNGGDWMMEI 313
            T  IYT+ +++ N  + + ++
Sbjct: 290 ITLSIYTHEIDAHNKQEQIKKL 311


>gi|113971550|ref|YP_735343.1| phage integrase family protein [Shewanella sp. MR-4]
 gi|113886234|gb|ABI40286.1| phage integrase family protein [Shewanella sp. MR-4]
          Length = 310

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 123/288 (42%), Gaps = 20/288 (6%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ ++ S      Q + +      ++++  +I      +IRA +     ++   RS+ R+
Sbjct: 18  SQRSIASQMRSIAQLMDWPDATIGKQLS--SINYQQAMQIRALLIH---EQWSARSINRA 72

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           ++ IKS +K            + ++ ++   K        L+ +Q   L    L   S  
Sbjct: 73  MTAIKSIVKVAALMGEADMQQVAHINSIANMKHGAHQGNPLSAEQVTKL----LALLSKR 128

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVR 207
                 R  AI  L  G GLR SE  +L   +     ST+++  GKG+K RI+ L   V 
Sbjct: 129 QDTYGLRTLAIFALFLGTGLRRSELAALMLADYDSATSTIKVVAGKGNKSRILFLPNWVE 188

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGI--RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           + ++ + ++    L   I      GI    +P++     R ++     +G+ +  + H L
Sbjct: 189 QHVIAWLNVRKMQLGPLICHCRTTGIIVHYRPVSQDALYRLVKDKLGDIGV-MGASPHDL 247

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           R +F T LL    D+ +++ + GH  +STT IY     K G  +M E 
Sbjct: 248 RRTFITRLLEQNVDINTVRQMAGHADISTTTIY----DKRGDAFMREA 291


>gi|225870541|ref|YP_002746488.1| tyrosine recombinase XerC [Streptococcus equi subsp. equi 4047]
 gi|254799369|sp|C0MBC3|XERS_STRE4 RecName: Full=Tyrosine recombinase xerS
 gi|225699945|emb|CAW93891.1| tyrosine recombinase XerC [Streptococcus equi subsp. equi 4047]
          Length = 356

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 65/326 (19%), Positives = 121/326 (37%), Gaps = 45/326 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  + ++F  +L             + + T+  LS  ++ AFI   R +   
Sbjct: 33  YSFTTLYEYLKEYKRFFEWLIDSDLSKAARIADVDLTTLEHLSKKDMEAFILYLRERPSL 92

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTE-------SNILNMRNLKKSNSLP- 126
                   +   ++ R+LS + S  KYL +             + +  +   KK  +L  
Sbjct: 93  NIYSTKKGVSQTTINRTLSALSSLYKYLTEEVENEHGEPYFYRNVMKKVATKKKRETLAA 152

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDA---------------RNSAILYLLYGCGLRIS 171
           RA N KQ L L D  +    +  K  +                R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETMAFLDYVDKEYEYKLSNRAKASFRKNKERDLAIIALLLASGIRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           EA++L  +++  +   + +  KG K   V +    +  +  Y  +         Q   F 
Sbjct: 213 EAVNLDLKDVNLNMMLVEVTRKGGKRDSVNVAAFAKPHLEAYLSVRKDRYQAEKQDVAFF 272

Query: 232 GIRG----KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +     G  +  T H LRH+ AT L         +   L
Sbjct: 273 LTAYRGLPNRIDASSIEKMVGKYSE--GFKIRVTPHKLRHTLATRLYDTTKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH     T +YT++ +    + + ++
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNALDKL 356


>gi|118579558|ref|YP_900808.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
 gi|118502268|gb|ABK98750.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
          Length = 367

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 51/314 (16%), Positives = 110/314 (35%), Gaps = 32/314 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+  + +R       +S     R+            IT++ + +            +
Sbjct: 73  EKYLEYCKAQRDY-----KSKAGRVRRLQRTFGEMRLIDITLEELERYQSARCTEAKQPK 127

Query: 79  RTQKIG-----DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN---SLPRALN 130
           +   +        ++ R L+ +K+     ++  +  +S +  +R ++ +       R L 
Sbjct: 128 KEGGVSSGAVSPATVNRELTALKNMFTKAEQWGLIPDSTLKTVRKVRLTKENNRRLRFLA 187

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             +   LVD+                  I+      G R  E LSLT  ++      +RI
Sbjct: 188 VAEMTALVDSCSRGL-----------REIVVFALNTGCRRGEILSLTWDHVDLKHGFIRI 236

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
               +       + +    +          +   I  P               +R     
Sbjct: 237 ADSKNGESRDIPINAALADM-------FKGVVRRIDSPYVFTNPDTGTRYQDVKRSFATA 289

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            R   + ++   H LRH+FA+HL+ NG DL ++  +LGH  L+ T  Y+++   +    +
Sbjct: 290 CRRAAI-MNFHFHDLRHTFASHLVMNGVDLTTVSRLLGHKSLTMTLRYSHLAPDHLKKAV 348

Query: 311 MEIYDQTHPSITQK 324
             +  +  P+I Q+
Sbjct: 349 ERLTWKDGPTIEQQ 362


>gi|308069260|ref|YP_003870865.1| Integrase [Paenibacillus polymyxa E681]
 gi|305858539|gb|ADM70327.1| Integrase [Paenibacillus polymyxa E681]
          Length = 366

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 67/338 (19%), Positives = 116/338 (34%), Gaps = 47/338 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA------FYTEEKITIQTIRQLSYTEI 71
            Q ++     +  LS  TL  Y  D   F  +L         T  ++T++ +  L    I
Sbjct: 23  VQQFMDYKLPD--LSPSTLLEYVRDYEAFFSWLRSEGLSTGETNAQVTLEELETLHMDSI 80

Query: 72  ---RAFISKRRTQKIGDRSLKRSLSGIKSFLKYL------------KKRKITTESNILNM 116
              R F+S +R       ++ R LS ++S   YL             KR I  +  I  +
Sbjct: 81  TGFRLFLSTKREGSNSRITISRKLSSLRSLFHYLSQIAEDENFYPLLKRNIMAKVEIKRI 140

Query: 117 RNLK------KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR------NSAILYLLY 164
              K      K   L      +    + +      +   + + +       ++ I  L+ 
Sbjct: 141 HKPKDTAAKLKGKILEEEELLEFIGYIYEGYGQDLADNKQALYSYELNKERDACIASLIL 200

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV----PLLPSVRKAILEYYDLCPFD 220
             GLR+SE ++L   ++  +   L +  KG+               +  ++ Y  L    
Sbjct: 201 NSGLRVSEIVNLNLDDLDINNKLLYVYRKGNNDETFKTPVYFREQSKDDLVLYLSLRHTR 260

Query: 221 LNL-NIQLPLFRGIRG-----KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                 +  LF          K +     Q  I +  +  G P   T H LRHSFAT   
Sbjct: 261 YRAPKKEKALFVTRPNGSTEGKRMTKRAIQAMIIKYAKRFGKPY-LTVHKLRHSFATDYY 319

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
               D+   +  LGH    TT++Y ++  K     +  
Sbjct: 320 LQN-DIYKTKEQLGHASTETTEVYAHLTDKTMSQAIER 356


>gi|212715402|ref|ZP_03323530.1| hypothetical protein BIFCAT_00297 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661708|gb|EEB22283.1| hypothetical protein BIFCAT_00297 [Bifidobacterium catenulatum DSM
           16992]
          Length = 276

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 70/306 (22%), Positives = 128/306 (41%), Gaps = 43/306 (14%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
              E     ++W+++L I  G S+ T++          I L          ++   ++  
Sbjct: 8   PPPEWRVSVEDWVKSL-IASGYSEDTVRCRRYKLTHAAIGLG---------KSPVDVTTG 57

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++ ++++ +        +LK   + + SF   L++  +  ++   ++  +K+  + PR  
Sbjct: 58  DLVSWMAGQH---WKPETLKAYRNTLTSFFGRLQRTSVRPDNPAADLPKVKRPKAHPRPC 114

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD--QST 187
            +K  L       L  + ET+ +      +L L   CGLR  E   +  +++MDD    +
Sbjct: 115 PDKYILA-----ALAKADETETL------MLRLAAECGLRRGEIAGVNSRDVMDDLLGKS 163

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           L ++GKGDK RIVPL   + +AI             +    LF G     +      + I
Sbjct: 164 LIVRGKGDKQRIVPLPDDLAEAIE------------SCGGWLFPGRWQGHVEESYVGKRI 211

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +L     LP    AH+LRH +AT   +   DL  +  +LGH  + TTQIY  +      
Sbjct: 212 SRL-----LPEGYGAHSLRHRYATATYAATHDLYLVARLLGHASVETTQIYVAMPDARLR 266

Query: 308 DWMMEI 313
             M  +
Sbjct: 267 AGMAAV 272


>gi|320161781|ref|YP_004175006.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
 gi|319995635|dbj|BAJ64406.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
          Length = 288

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 49/297 (16%), Positives = 102/297 (34%), Gaps = 31/297 (10%)

Query: 24  NLEIERGL-SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
            LE ++G  S  TL+ Y    R  +  L               ++ +++       RT  
Sbjct: 16  FLESQKGFISDSTLRWYVFYLRPLVAHLGDRETN--------SITTSDLINLFHLMRTDD 67

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
               +L   + G K   ++         +    +R        P  +  +    ++D   
Sbjct: 68  REPYTLFNFIRGWKRLFRWAVDEGYIAMNPAKKLRRPPLPQKSPAGIQAEDLSKMLD--- 124

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD---KIRI 199
              +        R+ A++  +   G+R+     LT   +  ++    +  KG    K R+
Sbjct: 125 ---AASKTGTPERDLALVLFVADTGVRLGGVAGLTVDRLDINKRRAIVLEKGRGGQKERV 181

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           V        A+  + +      +  + L          L P    +  ++L R   +   
Sbjct: 182 VFFSSRTAIALENWLEKRGETEDQRVFL----------LKPNGIYQLFKRLARKSEITGK 231

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
              H+ RH++A  LL+ G  +  +  ++GH  +  T    +   +   D + EIYD+
Sbjct: 232 WNPHSFRHAYARKLLAEGVSIGIVSHLMGHSNVQVT---IDFYGRFSHDELQEIYDK 285


>gi|325125744|gb|ADY85074.1| Hypothetical conserved protein [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 358

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 65/355 (18%), Positives = 131/355 (36%), Gaps = 42/355 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYT 54
           ME      ++  E + +  ++++  ++E   S  T   Y  + R+F  +L         +
Sbjct: 1   METKKYLSLIDRE-MAQMPDFVKEYQLETRHSLTTSYQYLTEIRRFFSWLIAENLTQAKS 59

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKI------GDRSLKRSLSGIKSFLKY------- 101
             ++    + +LS +++  ++ K    K          ++ RSL+ ++S  KY       
Sbjct: 60  PSQVLPSDLEKLSRSDVMLYLDKLEHSKNKQGHLNSPTTVNRSLNALRSLYKYLTITADK 119

Query: 102 LKKRKITTESNILNMRNLKKSNSL---PRALN--------EKQALTLVDNVLL-----HT 145
                    + +L +  L  +++L     AL         + Q +  +D           
Sbjct: 120 NNGEPYFDRNVMLKINFLPYTSTLNYRAHALEAHMYTGNLKYQFMDFLDQKFAGLCSGRA 179

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
               K    R+ A++ L+ G G+R+SE   +  +++   ++TL I  KG +   VP+   
Sbjct: 180 LSSFKQNKERDMAVIALILGTGIRVSECAGVDMKDLNLKEATLDITRKGGQRDSVPVADW 239

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLSTT 261
               + +Y  +             F   R       +     ++ + Q     G P   T
Sbjct: 240 TLPYLEKYLAIRADRYKAPATNKAFFLTRYHQECRRMTTNAIEKMVGQYSAAFGHP--IT 297

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            H LRH+ A+ L     D   +   LG    S T +YT+V+ +     +     Q
Sbjct: 298 PHKLRHTVASELYQATKDQVMVAQQLGQKGTSATDLYTHVDQREQRAALNASAKQ 352


>gi|282859345|ref|ZP_06268455.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282587877|gb|EFB93072.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 355

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 106/289 (36%), Gaps = 18/289 (6%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           R    F+     + I    IR ++      +    + + +   ++   L  +   +    
Sbjct: 53  RMLCEFIKDLESKDI---EIRSITEELFEKYRFFLKKKGLKGSTINNYLCWLSRLMFRAV 109

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
            ++I   +   +    K   ++ R L++     L+   +  +  E          +    
Sbjct: 110 SQRIIRYNPFEHAEYEKVEKAI-RFLSKSDVKNLMAMKMCDSDAELA------RRMFIFS 162

Query: 164 YGCGLRISEALSLT---PQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
              GL I++   LT    ++  D Q  +R  + K     IVPL P  +  I +   L   
Sbjct: 163 CFTGLAITDMEHLTFGYIKSAADGQMYIRKERQKTKMEFIVPLHPIAKTIIEQQRQLKAV 222

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
               N      R I     +  V    +  + +  G+    + H  RH+F T  LS G  
Sbjct: 223 KEEGNNTDMDNRLIFQPCCSRSVLAAKLSIVGKACGIKQRLSYHMARHTFGTMCLSAGIP 282

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           + SI  ++GH  +++TQIY  V      + M ++  +      +K+K+N
Sbjct: 283 IESIAKMMGHASIASTQIYAQVTDCKISEDMDKLIAKHQ----EKNKEN 327


>gi|10956351|ref|NP_052799.1| hypothetical protein pxo1_103 [Bacillus anthracis]
 gi|21392858|ref|NP_652938.1| integrase/recombinase, putative [Bacillus anthracis str. A2012]
 gi|47566494|ref|YP_022446.1| integrase/recombinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|208743354|ref|YP_002267805.1| integrase/recombinase, putative, (pxo1-103) [Bacillus cereus]
 gi|4894320|gb|AAD32408.1| pXO1-103 [Bacillus anthracis]
 gi|20520245|gb|AAM26127.1| putative integrase/recombinase [Bacillus anthracis str. A2012]
 gi|47552309|gb|AAT35474.1| integrase/recombinase, putative [Bacillus anthracis str. 'Ames
           Ancestor']
          Length = 317

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 122/293 (41%), Gaps = 29/293 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +  S+ T + Y  D   FL ++        TI  I++LS+ E+  +  +  ++K    +L
Sbjct: 29  KKRSERTKKLYLHDLSHFLRYIKE------TIGIIKELSHNEMEIYFYQL-SKKYAATTL 81

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQALTLVDNVLLHTS 146
           +R  + ++ FLKY+      +++    ++ +  KK   + R L  ++   ++D       
Sbjct: 82  RRKKTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLFPEEVNEILD------- 134

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPL 202
              K  +    ++ +LL   GLRI E  +    +++   S     LR+ GKG+K R V +
Sbjct: 135 -TLKKTNFFMYSLFFLLTTTGLRIEEVANAKWADLVFHPSLNVYLLRVVGKGNKTREVRI 193

Query: 203 LPSVRKAILEYYDLCPF--DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-- 258
              V   +     L     +L+ +          G         +Y+ +      LP   
Sbjct: 194 FEDVLNDLCHLRQLRKQKSELDASSSSAFLPKADGSHYRADYLSKYVAEKIEETNLPFLR 253

Query: 259 ----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                 T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y    ++   
Sbjct: 254 YRKHRITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLRERTRRQN 306


>gi|238926351|ref|ZP_04658111.1| recombinase [Selenomonas flueggei ATCC 43531]
 gi|238885755|gb|EEQ49393.1| recombinase [Selenomonas flueggei ATCC 43531]
          Length = 334

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 54/282 (19%), Positives = 107/282 (37%), Gaps = 16/282 (5%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T  +YE   R FL +       +  +  +  +   +IR ++ + RT+     +L    + 
Sbjct: 39  TRDTYELAIRLFLHWC-----MEQGLHPLNDVHDYQIRVYMEEMRTRGYSAATLMIKGAA 93

Query: 95  IKSFLKYLKKRKITTESNILNM--RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           I++F K  ++     E+   ++  RN +  +   + L   Q   + + +    + + +  
Sbjct: 94  IRAFYKVAQRLSFIAENPCADLQLRNPQHLDEDYKYLTVDQIKEICEGL---AADKNELR 150

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
             RN  I+YL+   GLR+ E + L+ ++I   +  + I+GKG    I+         +  
Sbjct: 151 RLRNLLIVYLMGVEGLRVVEVMRLSDEDIDWQRGRIEIRGKG-HAGIIYPCEETFGILRA 209

Query: 213 YYDLCPFDLNLNIQLPLFR----GIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRH 267
           Y +        +   P             ++    +  I +     GL       H  RH
Sbjct: 210 YIEKRGAVPPESRLTPTIISCANNNPKGRISRVGIRYVINKALTEAGLKQPGYACHLFRH 269

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           S  T+L     DLR +Q  L       T  Y +V+ +    +
Sbjct: 270 SCGTNLYQETKDLRVVQETLRQRSPKVTAKYAHVHDRMERRY 311


>gi|163792550|ref|ZP_02186527.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|159182255|gb|EDP66764.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
          Length = 256

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 59/250 (23%), Positives = 97/250 (38%), Gaps = 31/250 (12%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R LS  T +SY     +F  +           ++  +L   ++RAF     +  I   +L
Sbjct: 8   RNLSPATQRSYVLAVSKFSRYFD---------RSPDRLGLEDVRAFQVHLVSTGISWAAL 58

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            +++  ++ F           E     +   ++  +LP  L+  + +  ++ V    S  
Sbjct: 59  NQTVCALRFFYGVTLGHGEIPE----RIPYAREPRNLPVVLSADEVVRFLEAVASLKS-- 112

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR 207
                    A L   Y  GLR+SE ++L   ++   +  +R+  GKG K R V L   + 
Sbjct: 113 --------RAALTTAYAAGLRVSEVVALRVGDVDSGRMVIRVEHGKGGKDRYVMLSAQLL 164

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
             +  Y+ L         +  LF G    KP++  V     R  R   GL    T HTLR
Sbjct: 165 GILRTYWRLA------RPEHWLFPGREASKPIDVQVLHAACRSARAAAGLDKRVTVHTLR 218

Query: 267 HSFATHLLSN 276
           HSFAT     
Sbjct: 219 HSFATTCWRA 228


>gi|258511054|ref|YP_003184488.1| integrase family protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257477780|gb|ACV58099.1| integrase family protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 391

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 61/322 (18%), Positives = 120/322 (37%), Gaps = 38/322 (11%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           SF L +    W  +      L   T ++Y    + +++        ++    I ++    
Sbjct: 69  SFTLHEWASRWFADKSS--SLRPWTRRTYHHVLQAYIL-------PELGKMPISKIEARH 119

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           I+A + ++ + ++   ++ R    +K+ L    K     +S  LN+   +        L+
Sbjct: 120 IQA-LYRKLSNRLKPVTVHRIHRVLKTCLLAAVKAGYLDKSPFLNVEPPEHKTPPKPVLS 178

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-- 188
              A  L+  +  H                +L    G+R+ E   L  ++I  D   +  
Sbjct: 179 VNDAFRLLAWLREHRPTS--------YMAAFLAIHTGMRMGEIAGLQWRDIDLDTGVIQL 230

Query: 189 ---RIQGKGDKI-----------RIVPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRG 232
              R + KG +            R + +   V   +  +          +   +  + R 
Sbjct: 231 ERTRYRPKGGQDFLGPPKTFGSRRRIVVTREVVDELRRWKQSQQEIERESWTPESFVVRL 290

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
               P +P  F   I+  R+ LGLP   + H LRH+ AT LL +G DL+ +   LGH  +
Sbjct: 291 PNSAPPSPASFNNAIQNARKELGLP-PVSFHGLRHTHATWLLESGVDLKIVSERLGHSSI 349

Query: 293 STT-QIYTNVNSKNGGDWMMEI 313
           + T  IY +V      + + ++
Sbjct: 350 TITADIYAHVTDALQREAIEKL 371


>gi|325271510|ref|ZP_08138027.1| tyrosine recombinase, phage integrase family protein [Pseudomonas
           sp. TJI-51]
 gi|324103357|gb|EGC00687.1| tyrosine recombinase, phage integrase family protein [Pseudomonas
           sp. TJI-51]
          Length = 313

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 61/306 (19%), Positives = 110/306 (35%), Gaps = 29/306 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
              +NWL+        S  T++ Y      FL ++   +EE         L    + AF+
Sbjct: 9   DAFENWLRT-AFASPYSSKTIRVYCAVATGFLRYIDSRSEEAF----PNALDDDCVIAFL 63

Query: 76  SKRRTQK--IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK-----------KS 122
                              S + +   +L +  + T+S +  +               + 
Sbjct: 64  RAPGVGGKPYSRAYQVLRHSALCALFHWLVETGVVTDSPMERLPRHTGRRPGTPGGGNRP 123

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             LP  L  +    L+  +             R+SAI+ L    GLR  E  + T   + 
Sbjct: 124 KRLPPVLMWRDQRHLLQVIDSS----HGPAKVRDSAIVSLGLATGLRNEEICNATISGLD 179

Query: 183 DDQSTLRIQGKGDKIRIVPLLPS--VRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPL 238
                +R+ GKG+K R++           +  +       L  +      LF    G+ L
Sbjct: 180 LHYRRMRVVGKGNKERLIDFSHDDRALDPMRAWLKTRAEVLQQHERESDLLFISRAGRRL 239

Query: 239 NPGVFQRYIRQLRRYLGLP---LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           +  +  + + +  +  GL        AH LRH+ A+ + + G  +  I+  LGH  L+TT
Sbjct: 240 SGSLVYQQVSRHLQSAGLAGKLKRCGAHVLRHTAASVMFARGVPILQIKENLGHEDLATT 299

Query: 296 QIYTNV 301
           QIY ++
Sbjct: 300 QIYAHL 305


>gi|295425505|ref|ZP_06818197.1| phage integrase family site-specific recombinase [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064796|gb|EFG55712.1| phage integrase family site-specific recombinase [Lactobacillus
           amylolyticus DSM 11664]
          Length = 357

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 69/354 (19%), Positives = 132/354 (37%), Gaps = 42/354 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT------ 54
           ME      ++  EL K   ++++   +    S  T   Y  + R+F  +L          
Sbjct: 1   METKKYLALIQVELNK-MPDYVKQYNLGTNHSLATSYQYLTEIRRFFEWLRKEGISKADN 59

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKI------GDRSLKRSLSGIKSFLKY------- 101
             +++  T+  L   +I  +I   R  K          ++ RS++ ++S  K+       
Sbjct: 60  NRQVSTSTLAHLRRNDIMLYIDYLRHSKNQQGHLNSPTTVNRSINALRSLFKFLTITADN 119

Query: 102 LKKRKITTESNILNMRNLKKSNSL------------PRALNEKQALTLVDNVLLHTSHET 149
              +     + +L + +L  + +L               L  +    +  N   H + + 
Sbjct: 120 NHGQPYFERNVMLKIDSLNSTKTLNYRAHILESHMYTGNLKYEFLDFIAKNYEQHCNKQA 179

Query: 150 ----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
               K    R+ AI+ L+ G G+R+SE  ++  +++    + L +  KG +   VP+   
Sbjct: 180 LPAFKKNKQRDLAIIALILGTGIRVSECANVNLKDLNLKDAVLDVTRKGGQRDSVPIAEW 239

Query: 206 VRKAILEYYDLCPFD-LNLNIQLPLFRGIRG---KPLNPGVFQRYIRQLRRYLGLPLSTT 261
               ++EY  +     L    Q   F        + +     ++ I +     G P   T
Sbjct: 240 TVNYLIEYKKIRQQRYLADKTQTAFFLTRWHDQTRRITSNAIEKMINKYSAAFGHP--LT 297

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            H LRH+ A+ L     D   +   LG    S T +YT+VN +     + EI D
Sbjct: 298 PHKLRHTLASELYEVTKDQVLVAQQLGQKSTSATDLYTHVNQEKQRAALNEIPD 351


>gi|256393762|ref|YP_003115326.1| integrase family protein [Catenulispora acidiphila DSM 44928]
 gi|256359988|gb|ACU73485.1| integrase family protein [Catenulispora acidiphila DSM 44928]
          Length = 353

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 63/329 (19%), Positives = 122/329 (37%), Gaps = 44/329 (13%)

Query: 24  NLEIERGL-SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR-------AFI 75
           +L +  G  S  T  +Y  D  +    L    ++ +       + Y  +R        + 
Sbjct: 24  HLRVATGAMSPATRDAYVRDLTEAATLLGL--DKALDDVEAEDVEYALVRIANAPDRRYT 81

Query: 76  SKRRT---------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
             R+          + +  R   R  + ++    +  ++       + ++  ++      
Sbjct: 82  RTRKAGPGGEPAPGRGLQAR--ARWTAAVRGLFAWAAEQGYVRADPMPHVSRVRVPTRAV 139

Query: 127 RA---LNEKQALTLVDNVLLHTSHE----TKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
            A   L  +QA  L +   +  S       + +  R+  IL LL   G R++E  +    
Sbjct: 140 GARLGLTVEQAQALQETPAVAASRSELRADQRLTIRDEVILRLLTETGPRVAEVCAANLD 199

Query: 180 NIMDDQST----LRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDL--------NLNIQ 226
           ++   + T    LRI+ GKG + R VPL  ++   + +Y                  +  
Sbjct: 200 DVRQHELTGMPVLRIRAGKGGRSRDVPLSQTLVSMLEQYQQHERPAPPAGDAEADRSDAA 259

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRY--LGLPLSTTAHTLRHSFATHLL-SNGGDLRSI 283
             L   IRG+ +     QR + +  +     L  + T H LRH+ AT LL   G D+ ++
Sbjct: 260 RALLVTIRGRRMTARDVQRMVERRVKQMPAQLRRAVTPHGLRHTAATVLLRQAGADVGTV 319

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             ILGH  + TT +Y + ++      +  
Sbjct: 320 ADILGHADVGTTSVYLDPSATAAAQALQR 348


>gi|228943081|ref|ZP_04105576.1| Phage integrase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228975868|ref|ZP_04136397.1| Phage integrase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228783831|gb|EEM31881.1| Phage integrase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228816610|gb|EEM62740.1| Phage integrase [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 351

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 121/293 (41%), Gaps = 29/293 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +  S+ T + Y  D   FL ++        +I TI++LS+ E+  +  +  ++K    +L
Sbjct: 63  KKRSERTKKLYLHDLSHFLRYIKE------SIGTIKELSHNEMEIYFYQL-SKKYAATTL 115

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQALTLVDNVLLHTS 146
           +R  + ++ FLKY+      +++    ++ +  +K   + R L  ++   ++D       
Sbjct: 116 RRKKTVVQQFLKYVYDNNGLSDNFSSRLKKVSVRKEELINRDLFPEEVNEILD------- 168

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPL 202
              K  +    ++ +LL   GLRI E  +    ++    S     LR+ GKG+K R V +
Sbjct: 169 -TLKKTNFFMYSLFFLLTTTGLRIEEVANTKWADLAFHSSLNVYLLRVVGKGNKTREVRI 227

Query: 203 LPSVRKAILEYYDLCPF--DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-- 258
              V   I     L      L+ +          G         +Y+ +      LP   
Sbjct: 228 FEDVLDDICRLRQLRKQTSQLDASSISAFLPKANGSHYRADYLSKYVAEKIEETNLPFLR 287

Query: 259 ----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                 T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y    ++   
Sbjct: 288 YRKDRITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLRERTRRQN 340


>gi|298531262|ref|ZP_07018662.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508872|gb|EFI32778.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 394

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 105/248 (42%), Gaps = 16/248 (6%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           + +++  +++   S          S+ R ++ +K      ++ ++  +S   ++  L++ 
Sbjct: 141 LSEITRDDVQELQSNFLRMGHKPGSVNRYMALVKYIFNLAERWEVIDKSPTRHVSRLEEE 200

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           N   R L+  +   L+       S   K        I+  L   G R SEA++L  Q + 
Sbjct: 201 NHKERYLSSDETERLL-------SELKKCRSPVVPDIIEFLILTGARRSEAVNLPWQELD 253

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPG 241
             +    I  + +K ++  ++P  R A+             N    +F      +P+   
Sbjct: 254 MAKGVWIIPAERNKAKVKKVIPLSRGAL-----NVLERRKENGCEYVFPNPETGEPM--K 306

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            F     ++R+  G+P     H LRH+FA+ L+++G  L  +Q +LGH  +STTQ Y ++
Sbjct: 307 HFHGTWDRIRKKAGIP-DVRIHDLRHNFASLLINSGRSLYEVQKLLGHADISTTQRYAHL 365

Query: 302 NSKNGGDW 309
           +     D 
Sbjct: 366 SQDTLKDA 373


>gi|296164226|ref|ZP_06846819.1| probable phage integrase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295900417|gb|EFG79830.1| probable phage integrase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 390

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 135/365 (36%), Gaps = 53/365 (14%)

Query: 1   MEGNNLPEIVSFELLKERQ--NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI 58
           ++G+ L  I+  EL+  R+  N+L+ L      S  T++ Y      FL + A   E+ +
Sbjct: 30  LDGSQLWVILDSELVMHREASNFLRTLHGADR-SPHTIRVYAGRVAAFLGWCA---EQGV 85

Query: 59  TIQTIRQLSYTEIRAFIS---KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
              +I   +    + F++    R  +     ++  +L+ +  FL++  +  +  ++    
Sbjct: 86  EWSSISLANLARFKHFLAVTPHRGGRLRSGTTVNATLTAVCEFLRFCARTGVIEQAVADR 145

Query: 116 MRNLKKSNSLPRALNEKQA--LTLVDNVLLHTSHETKWID----------------ARNS 157
           +   +     P   +  ++    +V   +L    +  + +                 R  
Sbjct: 146 LAEPRWLRFTPAGFDAGESGQFRMVRARMLKARAQATFPEALSAEQSQRVLACCRRPRER 205

Query: 158 AILYLLYGCGLRISEALSLTPQNIMD--DQST---------LRIQG---------KGDKI 197
            I  L++  GLRI EAL L   ++    D  T         + I+          K    
Sbjct: 206 FIATLMHESGLRIGEALGLRRGDLHLLPDSRTLGCAVLGAHIHIRHRANPNGALAKSPFP 265

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP----LNPGVFQRYIRQLRRY 253
           R VP   +V     +Y       L  +    +F  +  +P    +     + +  +L   
Sbjct: 266 RSVPTSQAVLSTYADYQFERSEILGEDDCDMVFVNLYHQPLGAPMTYRAAKAFFERLATE 325

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G   +   H  RH+ AT+ +  G DL  +Q +LGH  L +T +Y +   ++    +  +
Sbjct: 326 CG--FAVRPHMFRHTAATNWVRAGVDLDVVQRLLGHAALGSTAVYLHARDEDKRRAVEAV 383

Query: 314 YDQTH 318
               H
Sbjct: 384 AAGEH 388


>gi|239628066|ref|ZP_04671097.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518212|gb|EEQ58078.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 293

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 126/297 (42%), Gaps = 32/297 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +   L  E   ++ T+  Y  D ++ L+F+            + + S  E R ++S 
Sbjct: 6   INEFQSYLRNEE-KAEATISKYLHDVKEMLVFIEEM--------DLNKESLIEYRKYLSS 56

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +       +++   LS I +FLK+   + +      L ++ LK    +   ++EK+ LT 
Sbjct: 57  Q----YKPQTVNGKLSAINAFLKF---KDLLE----LKVKFLKVQKRV--YVDEKRELTE 103

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            D   L  + +          ++ +LYG G+RISE   +T + I   ++ + ++GK    
Sbjct: 104 QDFKRLIAAADRNGNKQLYYLMM-VLYGTGIRISELPFVTVEAIETGRAEISMKGK---Y 159

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL- 256
           R++    ++ + + EY  +         Q  +FR   G+ L+       +++L R   + 
Sbjct: 160 RVIIFPKNLVRLLKEYTKVSNIR-----QGCIFRTRSGRNLDRSNIYHSMKRLCRDAQVQ 214

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           P     H  RH FA    S   +L  +  ILGH  + TT+IY   + K     M ++
Sbjct: 215 PSKVFPHNFRHLFAKCFYSIEKNLSHLADILGHSSIETTRIYVAASIKQYEKIMDKM 271


>gi|13475042|ref|NP_106602.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025789|dbj|BAB52388.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 237

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 88/210 (41%), Gaps = 13/210 (6%)

Query: 113 ILNMRNLKKSNSLP-RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
           ++ +   + +   P   L E +  +++  +   T         R+ A+  L++  G R+ 
Sbjct: 7   VVTLPFKRGARVAPVEYLEEPEIKSVLARIDRRTP-----SGQRDYALFSLMFNTGARVQ 61

Query: 172 EALSLTPQNIMD-DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
           E L+L   ++       +R+ GKG+K+R+ P+  +  + + E  +      +   +  +F
Sbjct: 62  EILNLRICDLRLVSPCQVRLHGKGNKVRLCPIWRNTAQLLQELINTQHSPSDNPAEQRVF 121

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
              RG PL     +  +R+               S   H+LRH+ A HLL  G D+ +I 
Sbjct: 122 LNDRGTPLTRFGVRYLLRKYVDMAAGEESTLAEKSIHPHSLRHTTAIHLLKAGVDIATIS 181

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
             LGH  L+ T  Y   +       + +++
Sbjct: 182 QWLGHSGLNVTMRYARADIDMKRQALEQVF 211


>gi|170690856|ref|ZP_02882022.1| integrase domain protein SAM domain protein [Burkholderia graminis
           C4D1M]
 gi|170144105|gb|EDT12267.1| integrase domain protein SAM domain protein [Burkholderia graminis
           C4D1M]
          Length = 261

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 59/236 (25%), Positives = 98/236 (41%), Gaps = 16/236 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-T 80
           L+++  ER  S  T  SY       L F A      I   T++ LS T +R F+      
Sbjct: 16  LEHMVAERNFSPNTQASYRDTLTLLLPFAAKLGGFAIDRMTVKDLSPTIVRQFLDHVECD 75

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKR---KITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +  G  +    LS + S  +++       ++  S + ++   K + +L   L + +   L
Sbjct: 76  RHCGGATRNLRLSALHSLARFIGMHSPVHLSWCSEVRSIPFKKTARTLIGYLEKSEMDAL 135

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGDK 196
                L        I+AR+ A+L  LY  G R  EA  LT   +   + ST+RI GKG+K
Sbjct: 136 -----LAAPDRRTAIEARDYALLLFLYNSGARADEAAKLTIGRLQLTEPSTVRILGKGNK 190

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           +R+ PL P+    + +       D        +FRG   +P+      R + Q  +
Sbjct: 191 MRVCPLWPTTSSILTQLVAGRSAD------DTVFRGRTNQPMTRFGIHRVVTQYAK 240


>gi|313499139|gb|ADR60505.1| Phage integrase family protein [Pseudomonas putida BIRD-1]
          Length = 304

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 113/287 (39%), Gaps = 19/287 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           LQ +     L+  + Q+     +     L F     + +    +L    + A ++  R  
Sbjct: 10  LQYMA---RLAPSSQQTMRYILQDAADRLGFVDCNIVDV-PWHRLEPGHVIALVAALRAD 65

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLP--RALNEKQALTL 137
                S    ++ I+  +    ++ +     +L +R +K    + LP  R L       L
Sbjct: 66  GYAPNSSSLYVNAIRGVMNEAWRQGLIDHEQLLRIREVKPATGSRLPPGRNLRRSLIREL 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D      + + +    R++AI+ LLYG G+R SE++ +    +  +  +L++ GKG+  
Sbjct: 126 MDVC----AADPRPQGVRDAAIIALLYGTGMRKSESVDIDLDQVDFEARSLQVVGKGNHQ 181

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNP-GVFQRYIRQLRRY 253
            +    P   + +  + +L   +L    +   F   R  RG  +    + +  I  + R 
Sbjct: 182 LVKYAPPWAFEKLQAWLELRRQELPAGAEDDPFLFNRIRRGNHITRARITKHAIYYIARQ 241

Query: 254 --LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
               + +    H  R +F T ++    DL   Q +  H  + TT IY
Sbjct: 242 RGAQVGVKIMPHDFRRAFITRVIEE-HDLSIAQKLAHHANIQTTAIY 287


>gi|295692999|ref|YP_003601609.1| tyrosine recombinase xerc [Lactobacillus crispatus ST1]
 gi|295031105|emb|CBL50584.1| Tyrosine recombinase xerC [Lactobacillus crispatus ST1]
          Length = 355

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 132/357 (36%), Gaps = 42/357 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT------ 54
           ME     E++  E+ K   ++++   +    S  T   Y  + R+F  +L          
Sbjct: 1   METAKYLELIKIEVNK-LPDFVKQFNLGTNHSLTTTYQYLTEIRRFFDWLRQENISSASD 59

Query: 55  EEKITIQTIRQLSYTEIRAFISKR------RTQKIGDRSLKRSLSGIKSFLKY------- 101
              +T  T+  L   +I  +I         + +     ++ RS++ ++S  K+       
Sbjct: 60  NAHVTTDTLANLRRNDIMLYIDYLGHTRNKQGRLNSPTTINRSINALRSLFKFLTITADN 119

Query: 102 LKKRKITTESNILNMRNLKKSNSL---PRALN--------EKQALTLVDNVLLHTSHETK 150
                    + +L + +L  + +L      L         + + LT +D   ++  ++  
Sbjct: 120 NHGEPYFERNVMLKINSLNDTQTLNYRAHVLESHMYTGKLKFEFLTFIDQDYINHCNKQA 179

Query: 151 WID-----ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
            I       R+ AI  L+ G G+R+SE   +   ++    + L +  KG +   VP+   
Sbjct: 180 KIGFKQNKERDMAIAALILGTGIRVSECAGVDLSDLNLKDAVLDVTRKGGQKDSVPIAEW 239

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLSTT 261
               I  Y  +     + + +   F   +       +     ++ I +     G P   T
Sbjct: 240 TLPYIKRYKGIRNERYHADSKQVAFFLTQWHGQTRRITTNAIEKMINKYSAAFGHP--LT 297

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
            H LRH+ A+ L     D   +   LG    S T +YT+V+ K     + EI  + H
Sbjct: 298 PHKLRHTVASELYEVTKDQVLVAQQLGQKGTSATDLYTHVDQKKQRAALNEISKENH 354


>gi|326943329|gb|AEA19224.1| Phage integrase [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 347

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 121/293 (41%), Gaps = 29/293 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +  S+ T + Y  D   FL ++        +I TI++LS+ E+  +  +  ++K    +L
Sbjct: 59  KKRSERTKKLYLHDLSHFLRYIKE------SIGTIKELSHNEMEIYFYQL-SKKYAATTL 111

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQALTLVDNVLLHTS 146
           +R  + ++ FLKY+      +++    ++ +  +K   + R L  ++   ++D       
Sbjct: 112 RRKKTVVQQFLKYVYDNNGLSDNFSSRLKKVSVRKEELINRDLFPEEVNEILD------- 164

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPL 202
              K  +    ++ +LL   GLRI E  +    ++    S     LR+ GKG+K R V +
Sbjct: 165 -TLKKTNFFMYSLFFLLTTTGLRIEEVANTKWADLAFHSSLNVYLLRVVGKGNKTREVRI 223

Query: 203 LPSVRKAILEYYDLCPF--DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-- 258
              V   I     L      L+ +          G         +Y+ +      LP   
Sbjct: 224 FEDVLDDICRLRQLRKQTSQLDASSISAFLPKANGSHYRADYLSKYVAEKIEETNLPFLR 283

Query: 259 ----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                 T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y    ++   
Sbjct: 284 YRKDRITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLRERTRRQN 336


>gi|169825501|ref|YP_001695676.1| tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41]
 gi|168994778|gb|ACA42317.1| Tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41]
          Length = 368

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 63/338 (18%), Positives = 127/338 (37%), Gaps = 49/338 (14%)

Query: 23  QNLEIERG-LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFI 75
           + +  ++   S LTL  Y  +  +FL +L             I  +++  L+  ++  F+
Sbjct: 28  EYIRDKKSKYSPLTLSGYLYNIEKFLNWLLEEGIVDAKNIRDIHYESLSTLAKLDVELFV 87

Query: 76  SKRRTQ-----------KIGDRSLKRSLSGIKSFLKY--------LKKRKITTESNILNM 116
            K  ++           +    S+ R++  +KS  +Y        + +      + +L +
Sbjct: 88  DKMASEILSGEDDNEPKRRSKTSVARAVQALKSLFRYLTVETEDKVTQEPYFNRNVMLKI 147

Query: 117 -----------RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-----RNSAIL 160
                      R+ +      ++    + L  +D     T    K         R+ AIL
Sbjct: 148 SVDLELESKSRRSKRIEKKTYKSDEIDELLHFIDEEYAATLSSRKLTYFEMNKIRDLAIL 207

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
            +L+G G+R +E + L  +++      L +  KGDK   V + PS    + EY       
Sbjct: 208 AVLFGSGIRGNELVGLKIKDVYMKDCYLDVIRKGDKADSVAIRPSALTYLEEYLKQRSKL 267

Query: 221 LNLNIQLP-LFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
            ++    P +F           ++     R +++     G     T H  R++F+    +
Sbjct: 268 YSVKTNYPFVFVAKSPDGTVKQMSNQTLIRLVKKYTLAYG--KEITPHKARYTFSKQYQA 325

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            GG L  ++  LGH  + TT +YT  + K   D +  +
Sbjct: 326 QGGTLIGLRDQLGHQNIETTSLYTTESMKEQKDVVTRM 363


>gi|320449745|ref|YP_004201841.1| transposase [Thermus scotoductus SA-01]
 gi|320149914|gb|ADW21292.1| transposase [Thermus scotoductus SA-01]
          Length = 391

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 65/319 (20%), Positives = 125/319 (39%), Gaps = 28/319 (8%)

Query: 22  LQNL-EIER-GLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKR 78
           L+ L  +ER GL   +++    +    L  L      + +    ++++    +RA + + 
Sbjct: 76  LEYLKRLEREGLRPNSIRLALDELAHALPSLKDPKAHDPLGRMRLQEVKPVHVRAAVDRV 135

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTL 137
                  R++ R L  +K+  +   + ++   +    ++  L K     RAL   +   L
Sbjct: 136 VEAGYAPRTVGRVLMRLKALFREALRLELVARNPAEAVKVRLPKGEKAARALEPHEVARL 195

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI------- 190
           ++      S +        + +L L+   GLR  EAL+L  ++I  +   L +       
Sbjct: 196 LEAAEASRSKDM-------ALLLRLMLETGLRRGEALALQWRDIDLEAGELTVGRAWVKV 248

Query: 191 --------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
                          R VPL   +   +    +     L       LF     KP++P  
Sbjct: 249 AGRGAFSEPKTPTAKRKVPLPRGLLLRLKARREELLARLTPEEVDGLFLVGGVKPVDPDA 308

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           F  Y+R+L    GL      H LRH++AT  LS G  L  +   LGH   + T  +Y ++
Sbjct: 309 FNHYLRRLAERAGLGR-VRVHDLRHTWATLALSRGVPLEVVSERLGHASPTITLNVYRHL 367

Query: 302 NSKNGGDWMMEIYDQTHPS 320
             +    W++++ +  +P+
Sbjct: 368 LEEERRGWVLDLEELLYPA 386


>gi|209916846|ref|YP_002291166.1| phage integrase [Escherichia coli SE11]
 gi|209915272|dbj|BAG80344.1| phage integrase [Escherichia coli SE11]
          Length = 332

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/304 (18%), Positives = 110/304 (36%), Gaps = 31/304 (10%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSLK 89
            +  T+ +Y      +L F            T        +  ++    T +++   +++
Sbjct: 30  CAPNTIDAYARGVNDWLAFCHSV------ALTAAVAGRDTVALYVRSLHTGRQLAAATIR 83

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRN----------LKKSNSLPRALNEKQALTLVD 139
             L+ ++ +  +L +  I   + +               +     LP   ++ + L  ++
Sbjct: 84  HRLTVVRLYNDWLCEEGIRERNPVRRGVWKNGGKGKAGIVPLQRRLPWIPDDAEWLRFLE 143

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDK 196
                        D R   +L L Y CGLR  E  ++   +I   Q  L ++    K   
Sbjct: 144 V--------AGQADIRTRFMLALAYDCGLRREELCTVATGDIDPSQRLLTVRAEHTKNRF 195

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK--PLNPGVFQRYIRQLRRYL 254
            R+VP  P   +    +        +    L L R  R +  P++   + + +R L    
Sbjct: 196 GRVVPYSPVTGELYTAWLTERRMLSSSRGPLFLSRSPRNRAEPISNWTWSKVVRGLAIKA 255

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            LPL  + HT RH   T L   G D+  I +  GH R+ +T +Y ++++++         
Sbjct: 256 DLPL-ISTHTFRHLCLTELARVGWDIHEIAAFAGHRRIQSTLLYIHLSARDLSSRFNYTV 314

Query: 315 DQTH 318
              H
Sbjct: 315 ASLH 318


>gi|240143906|ref|ZP_04742507.1| integrase [Roseburia intestinalis L1-82]
 gi|257204099|gb|EEV02384.1| integrase [Roseburia intestinalis L1-82]
          Length = 270

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 58/302 (19%), Positives = 123/302 (40%), Gaps = 37/302 (12%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +K+ + + + L+ +  LSK T Q Y  +  +F+ +L             ++++      +
Sbjct: 1   MKQFEGYEEYLK-QSELSKQTRQVYLREAEKFVRYLNG-----------KEITKDRTMLY 48

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEK 132
             K R + +   ++   +  +  +L+YL+  +        +++ LK  K  S+   ++ K
Sbjct: 49  REKLREEDLSPATINLYVIAVNRYLRYLECGQ-------ASIKTLKVQKKRSVENVISRK 101

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L++        +          I+  L   G+R+SE   +T +    +   +++  
Sbjct: 102 EYQELLNYAKSSGRKK-------YYYIMRTLALTGIRVSELQYITVE--TLETGRVQVYN 152

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG  IR V L   + + + ++               +FRG  G P+N     + I  L  
Sbjct: 153 KGK-IRDVYLPDVLIRELKKFCRE-----EKENDGIIFRGRGGDPINRITVYKMIAYLGD 206

Query: 253 YLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            +G+       H+ RH FA   +   G+L  +  +LGH  + TT+IYT    +     + 
Sbjct: 207 MVGIKKEKVHPHSFRHFFAISYMERYGNLAELADLLGHTSIETTRIYTTSTVEEKRRKLN 266

Query: 312 EI 313
            +
Sbjct: 267 NL 268


>gi|239623220|ref|ZP_04666251.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522186|gb|EEQ62052.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 284

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 53/310 (17%), Positives = 118/310 (38%), Gaps = 43/310 (13%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           + EL++    +   L + + +S  T+ +Y    + F       + + I++  +  + +  
Sbjct: 12  NQELIEALDAFQNYL-LRQNMSSNTITAYMYGVKHFYSCYDQLSPDNISLYKVSLMDH-- 68

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRA 128
                          +++   +  +  FLK+L  R          +R ++      L R 
Sbjct: 69  ------------YQPQTVNIRIRALNCFLKFLGIRDY-------KIRAIRIQQKCYLDRV 109

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARN--SAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           +++     L             W D +     I+  +   G+R+SE +    +++   Q 
Sbjct: 110 ISQADYEYL---------KRRLWEDGQYTFYFIIRFITATGVRVSELVMFEVRDVY--QG 158

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
              I  KG+K+R + +  S++K  + +      +       PLF    G  ++    +  
Sbjct: 159 YKDIYSKGNKMRRIYIPSSLQKNAIHWL-----EAEGRHSGPLFLSHLGCCISISGIRAQ 213

Query: 247 IRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           ++       L       H+ RH FA + + NGGD+  + ++LGH  + +T+IY    S  
Sbjct: 214 LKTYACRYNLDPRVVYPHSFRHRFAKNFIENGGDIAFLSNLLGHDSIESTRIYLRRTSTE 273

Query: 306 GGDWMMEIYD 315
                 ++ +
Sbjct: 274 QAQIFNQVVN 283


>gi|229065704|ref|ZP_04200929.1| Phage integrase [Bacillus cereus AH603]
 gi|228715567|gb|EEL67367.1| Phage integrase [Bacillus cereus AH603]
          Length = 351

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 120/293 (40%), Gaps = 29/293 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +  S+ T + Y  D   FL ++        TI TI  LS+ E+  +  +  ++K    +L
Sbjct: 63  KKRSERTKKIYLHDLSHFLRYIKE------TIGTIHDLSHNEMEIYFYQL-SKKYAATTL 115

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQALTLVDNVLLHTS 146
           +R  + ++ FLKY+      ++     ++ +  KK   + R L  ++   ++D +     
Sbjct: 116 RRKKTVVQQFLKYVYDNTGLSDDYSSRLKKVSVKKEELVNRDLFPEEVNEILDAL----- 170

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----DQSTLRIQGKGDKIRIVPL 202
              K  +     + +LL   GLRI E  +    +++     +   LR+ GKG+K R V +
Sbjct: 171 ---KKTNFFMYTLFFLLTTTGLRIEEVANAKWADLVFHSSLNAYLLRVVGKGNKAREVRI 227

Query: 203 LPSVRKAILEYYDLCPF--DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-- 258
              V   I     L     +L+ +          G         +Y+ +      LP   
Sbjct: 228 FEDVLDDICRLRQLRKQTSELDASSTSAFLPKADGSYYRADYLSKYVAEKIEETNLPFLR 287

Query: 259 ----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                 T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y    ++   
Sbjct: 288 YRKDRITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLRERTRRQN 340


>gi|326795207|ref|YP_004313027.1| integrase family protein [Marinomonas mediterranea MMB-1]
 gi|326545971|gb|ADZ91191.1| integrase family protein [Marinomonas mediterranea MMB-1]
          Length = 283

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 107/281 (38%), Gaps = 31/281 (11%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RT 80
           +  + +E GLS LT ++Y     +   +               ++   +I+ +I    R 
Sbjct: 9   IDTMTLE-GLSPLTQKAYLYQIGEASRYFNL---------PPDRIRRADIQRYILHLIRD 58

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     S ++S+  +    + +  R        + + +  K   +P  L   +   ++  
Sbjct: 59  RGWSWSSCRQSVHALNFLYQKVLSRNRLR----VALPHPNKQQRIPDLLYPNEVHRMISA 114

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRI 199
                +           A + L Y  G+R  E + L   ++    S ++I+ GKG + R 
Sbjct: 115 CERGKA----------KAAIMLAYATGMRAGEIVRLKVPDLDGKNSCIKIREGKGRRDRY 164

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           V     ++  + EY+      +       ++   + + ++    +R ++   +   +   
Sbjct: 165 VLFPEGLKVPLREYW-----RVFRPTDYVVYGLDKDRKIDTSTLRRGLKLAAQQAEIHKE 219

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              H+LRH+FA H L  G  L  +Q +LGH  + TT  Y  
Sbjct: 220 VRFHSLRHAFACHQLLRGMPLPRLQILLGHQVIQTTFRYLQ 260


>gi|253573104|ref|ZP_04850494.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|256842101|ref|ZP_05547606.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|301308733|ref|ZP_07214685.1| mobilizable transposon, int protein [Bacteroides sp. 20_3]
 gi|251837298|gb|EES65399.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|256736417|gb|EEU49746.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|300833257|gb|EFK63875.1| mobilizable transposon, int protein [Bacteroides sp. 20_3]
          Length = 397

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 59/310 (19%), Positives = 118/310 (38%), Gaps = 45/310 (14%)

Query: 20  NWLQNLEI---ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           ++L N+     ERG S      YE      +  L  +  + I     R +    + +F+ 
Sbjct: 106 DYLMNMRSQSKERG-SLN----YEKTVGNTIRELKLFRGDYI---AFRDIDKDFLNSFVD 157

Query: 77  KRRTQK-------------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM---RNLK 120
             +  K             + + S+      +++ +    K  I T +          +K
Sbjct: 158 FLKQAKKASKFGLLKAGGVLSNNSVIAYYGVLRTAINRAYKEGIITVNPTKEFDFASKVK 217

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
              S    L  ++   L+         E K+   + + +   L  CGLR+S+   L   +
Sbjct: 218 AEVSRREYLTIEELKRLI-------GTECKYEIMKQAFLFSCL--CGLRVSDIRKLKWND 268

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           +      +RI+ K  K +    LP   +A+ ++          ++  PL         + 
Sbjct: 269 LQKSGERIRIEIKMQKTKEPLYLPISDEAL-KWLPQQNEAKGDDLIFPL--------THE 319

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           G   + +++  +  G+    + H  RH+ AT +L+ G DL ++  +LGH  ++TTQIY  
Sbjct: 320 GTINKILQKWAKDAGVIKHISFHVARHTHATMMLTLGADLYTVSKLLGHKNIATTQIYAK 379

Query: 301 VNSKNGGDWM 310
           +  K   + +
Sbjct: 380 IVDKKKEEAI 389


>gi|261377411|ref|YP_003208350.1| putative integrase [uncultured bacterium]
 gi|257735399|emb|CAZ72214.1| putative integrase [uncultured bacterium]
          Length = 312

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/293 (21%), Positives = 115/293 (39%), Gaps = 28/293 (9%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
            S  T+++Y    R+F ++L            I Q    +I A+    + +     +++ 
Sbjct: 32  ASPKTIETYSKAIRRFFVYLMENG--------ITQPQREDIVAYRDYLKLEH-KPTTVQG 82

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKS-NSLPRALNEKQALTLVDNVLLHTSHET 149
            L+ +K F ++  +  +   +    ++  K         L  KQ   L+          +
Sbjct: 83  YLAAVKLFFQWTAQEGLYP-NVADRVKGAKLDTEHKKDYLTTKQVARLL-----GAIDRS 136

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIR--IVPLLPS 205
                R+ A+L ++   GLR    +     +I    D   L  QGKG + +   V L   
Sbjct: 137 TLKGLRDYAMLSVMVTTGLREISIVRADIGDIRTAGDAVALFYQGKGHEEKADYVKLAEP 196

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGI----RGKPLNPGVFQRYIRQLRRYLGLP-LST 260
           V +A+  Y          + + PLF  I     G+ +      R  ++    +GL     
Sbjct: 197 VEEAVRAYLKARG---GADPKAPLFSSIANRNNGERMTTRSVSRVAKERLIAVGLESDRL 253

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           T H++RH+ AT  L NGG +   + +LGH  ++TT IY++   +   +    I
Sbjct: 254 TGHSMRHTAATLNLLNGGTVEETRQLLGHTNINTTLIYSHALERAKNNSEERI 306


>gi|291563740|emb|CBL42556.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4]
          Length = 425

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 49/305 (16%), Positives = 117/305 (38%), Gaps = 34/305 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +   +E+K+   +I  +  ++ + +  + + + +   ++  S   +K+      +     
Sbjct: 115 MKLLSEDKLGAASIDSVKLSDAKEWALRMQEKGVAYSTICNSKRSLKAIFYMAVQDDCLR 174

Query: 110 ESNI-LNMRNLKKSNSLPRA-LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     +  +   +++P+  L   Q   L+D +     ++  ++   +  ++  L   G
Sbjct: 175 KNPFDFQINEVINDDTVPKVPLTPTQENELLDFM----QNDPVYVKYYDEVVI--LLETG 228

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKA-- 209
           LRISE   LTP ++  ++  + +                       R VP+  +  +A  
Sbjct: 229 LRISELCGLTPADLNFEKRFVNVDHQLLRSTEDGYYIEAPKTESGFRQVPMSAAAYEAFE 288

Query: 210 -ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTA 262
            +L+             +  LF    G P     +    + L +         LP   T 
Sbjct: 289 RVLKKRRDGKCIEVDGYKDFLFLNRDGLPKTAVNYDAMFKCLAKKYNKCHKEPLPDVMTP 348

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPSI 321
           HT+RH+F T + + G + +++Q I+GH  +  T   Y +    +  + M  +  +  P+ 
Sbjct: 349 HTMRHTFCTRMANAGMNPKALQYIMGHANIVMTLNYYAHATFHSAQEEMERLQAKAKPTA 408

Query: 322 TQKDK 326
             K +
Sbjct: 409 EVKPE 413


>gi|229014934|ref|ZP_04172022.1| Phage integrase [Bacillus mycoides DSM 2048]
 gi|228746346|gb|EEL96261.1| Phage integrase [Bacillus mycoides DSM 2048]
          Length = 351

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 120/293 (40%), Gaps = 29/293 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +  S+ T + Y  D   FL ++        TI TI  LS+ E+  +  +  ++K    +L
Sbjct: 63  KKRSERTKKIYLHDLSHFLRYIKE------TIGTIHDLSHNEMEIYFYQL-SKKYAATTL 115

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQALTLVDNVLLHTS 146
           +R  + ++ FLKY+      ++     ++ +  KK + + R L  ++   ++D +     
Sbjct: 116 RRKKTVVQQFLKYVYDNTGLSDDYSSRLKKISVKKEDLVNRDLFPEEVNEILDAL----- 170

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----DQSTLRIQGKGDKIRIVPL 202
              K        + +LL   GLRI E  +    +++     +   LR+ GKG+K R V +
Sbjct: 171 ---KKTSFFMYTLFFLLTTTGLRIEEVANAKWADLVFHSSLNAYLLRVVGKGNKAREVRI 227

Query: 203 LPSVRKAILEYYDLCPF--DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-- 258
              V   I     L     +L+ +          G         +Y+ +      LP   
Sbjct: 228 FEDVLDDICHLRQLRKQTSELDASSTSAFLPKADGSYYRADYLSKYVAEKIEETNLPFLR 287

Query: 259 ----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                 T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y    ++   
Sbjct: 288 YRKDRITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLRERTRRQN 340


>gi|237710114|ref|ZP_04540595.1| transposase [Bacteroides sp. 9_1_42FAA]
 gi|229455576|gb|EEO61297.1| transposase [Bacteroides sp. 9_1_42FAA]
          Length = 320

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/288 (18%), Positives = 109/288 (37%), Gaps = 15/288 (5%)

Query: 32  SKLTLQSYECDTRQFLIF-LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +  T+Q YE   +    F    Y ++ + +  I +    +   ++  +  +K    +  +
Sbjct: 44  APATVQRYETSLKHTRDFVWETYHKKDVLLDEISRQFIEDYEFWL--KTEKKCCHNTATK 101

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L   K  ++    +        L +R        P  L + +   L+   +       +
Sbjct: 102 YLKNFKKIIRIALAKGWMKNDPFLEIR-FSLDKVEPDFLEDSEIQKLISKEI----DIPR 156

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
               R+  I       GL  S+   L  ++I++D + +R   KG +   +     + +  
Sbjct: 157 LSQVRD--IFVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQKTKIMCNIPLMEIP 214

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           L+  +    +        LF  +  + +N      Y+++L    G+  + T H  RH+FA
Sbjct: 215 LKILEKYSTNEYCKKHGVLFPVLCNQKMNA-----YLKELADICGIKKTLTTHVGRHTFA 269

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           T  L+NG  + S+  +LGH  +  T+ Y  V  +     M +I    H
Sbjct: 270 TFALANGVSIESVAKMLGHTNVQMTRHYARVLDRTVIREMSQIKMDFH 317


>gi|288927180|ref|ZP_06421060.1| integrase/recombinase y4rA [Prevotella buccae D17]
 gi|288336049|gb|EFC74450.1| integrase/recombinase y4rA [Prevotella buccae D17]
          Length = 426

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 120/297 (40%), Gaps = 24/297 (8%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L  L  +R     T+ ++      F+  L+        I +I  ++   I  F+   +T 
Sbjct: 130 LDFLREQRRCEP-TIHNHRRLLSYFIAGLSQK-----GIDSICGITEKVIVEFVDHAQTC 183

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNLKKSNSLPRALNEKQALTLVD 139
           K            I+ F  +L +R +T+ +   +L   N  +   LP   +  +   +  
Sbjct: 184 K------SEHFYAIRQFCSFLYERGMTSTNLSYVLTRSNFPQHEKLPSVYSCDEIKQI-- 235

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR 198
                +  ++  +  R+ AI  L    GLR+S+  SLT  NI  D   + + Q K     
Sbjct: 236 ---EGSIEQSSAVGKRDYAIFLLASRLGLRVSDIASLTWDNIDWDNGKITLYQYKTKAPM 292

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP- 257
            +PLL  + +A++ Y        +L  ++ L      +P+        I ++ +  G+  
Sbjct: 293 ELPLLREIGEALVTYARDSRPKSHLK-EVFLTASAPYRPMTRISLNGVITRIMQSSGIDI 351

Query: 258 --LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                  H++RHS A+++L  G  L  I  ILGH    TT  Y  V+  N  + +++
Sbjct: 352 SSRRFGPHSMRHSLASNMLRQGTSLPVISGILGHESTQTTMEYLRVDIVNLRECVLD 408


>gi|266620800|ref|ZP_06113735.1| site-specific recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
 gi|288867585|gb|EFC99883.1| site-specific recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
          Length = 285

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 64/305 (20%), Positives = 119/305 (39%), Gaps = 38/305 (12%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L++E + +L     E+  SK T+  Y  D  ++L FL         I     + Y     
Sbjct: 10  LMEEYRKYLVY--NEK--SKSTINKYLRDAGKYLQFLKTREGAGNEITKESTMDYKM--- 62

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL----PRAL 129
                  +K    S+   L+ + SFL +  K          ++R LK    +     R L
Sbjct: 63  ----ELMEKYKPASVNSYLTAVNSFLTFYGKTD-------CHVRLLKIQKRIFTDQSREL 111

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            + + + LV+                 + I+  + G G+RISE  ++T ++++   +++ 
Sbjct: 112 TKAEYIRLVETARYDKKERL-------ALIMETICGTGIRISELQNITVESLLSGYASVS 164

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
            +GK    RI+ +   +++ + EY               +F    GKP++       + +
Sbjct: 165 CKGK---ERIILIPVKLKEKLREYCFKHEIQSGS-----IFITRSGKPIDRSNVWTEMNK 216

Query: 250 LRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           L     +       H +RH FA        D+  +  ILGH  + TT+IYT  +S     
Sbjct: 217 LCEKANISHGKVFPHNMRHLFARTYYGKQKDIVHLADILGHSSIETTRIYTMTSSFEYER 276

Query: 309 WMMEI 313
            + E+
Sbjct: 277 QLEEM 281


>gi|296840910|ref|ZP_06899429.1| tyrosine recombinase XerD [Neisseria polysaccharea ATCC 43768]
 gi|296839547|gb|EFH23485.1| tyrosine recombinase XerD [Neisseria polysaccharea ATCC 43768]
          Length = 219

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 86/216 (39%), Gaps = 15/216 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L ++R LS+ TL  Y  D  +    L+               +   +          
Sbjct: 10  LETLWLDRRLSQNTLNGYRRDLEKIARRLSQSGRTLKDADEADLAAAVYV---------D 60

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                S  R+LS  K    ++++  + T++    ++  K   ++P  + E+Q   L+   
Sbjct: 61  GEQRSSQARALSACKRLYIWMEREGMRTDNPTRLLKPPKIDKNIPTLITEQQISRLL--- 117

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
                        R+ A+L L+Y  GLR+SEA+ L+  N+  D+  +   GKG+K RIVP
Sbjct: 118 --SAPDTDTPHGLRDKALLELMYATGLRVSEAVRLSFGNLDLDRGCITTLGKGNKQRIVP 175

Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGK 236
           +       +  YY    P  L       LF   + +
Sbjct: 176 MGRESVYWVERYYKEARPLLLKGRSCDALFVSQKKQ 211


>gi|304437725|ref|ZP_07397676.1| integrase domain protein SAM domain protein [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304369274|gb|EFM22948.1| integrase domain protein SAM domain protein [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 352

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 54/282 (19%), Positives = 107/282 (37%), Gaps = 16/282 (5%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T  +YE   R FL +       +  +  +  +   +IR ++ + RT+     +L    + 
Sbjct: 56  TRDTYELAIRLFLHWC-----MEQGLHPLNDMHDYQIRVYMEEMRTRGYSAATLMIKGAA 110

Query: 95  IKSFLKYLKKRKITTESNILNM--RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           I++F K  ++     E+   ++  RN +  +   + L   Q   + + +    + + +  
Sbjct: 111 IRAFYKVAQRLSFIAENPCADLQLRNPQHLDEDYKYLTVDQIKEICEGL---AADKNELR 167

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
             RN  I+YL+   GLR+ E + L+ ++I   +  + I+GKG    I+         +  
Sbjct: 168 RLRNLLIVYLMGVEGLRVVEVMRLSDEDIDWQRGRIEIRGKG-HAGIIYPCEETFGILRA 226

Query: 213 YYDLCPFDLNLNIQLPLFR----GIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRH 267
           Y +        +   P             ++    +  I +     GL       H  RH
Sbjct: 227 YIETRGAVPPESRLTPTIISCANNNPKGRISRVGIRYVINKALTEAGLKQPGYACHLFRH 286

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           S  T+L     DLR +Q  L       T  Y +V+ +    +
Sbjct: 287 SCGTNLYQETKDLRVVQETLRQRSPKVTAKYAHVHDRMERRY 328


>gi|150005370|ref|YP_001300114.1| putative phage integrase/recombinase [Bacteroides vulgatus ATCC
           8482]
 gi|149933794|gb|ABR40492.1| putative phage integrase/recombinase [Bacteroides vulgatus ATCC
           8482]
          Length = 368

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/310 (18%), Positives = 123/310 (39%), Gaps = 41/310 (13%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           + +S +  K   +++  L      S  T+  Y    +Q+  +             + +++
Sbjct: 94  DAISEKNRKLLNDFIVWLTDNNDYSPHTVDIYYTSLKQYFEY-------------VNEIN 140

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
               + FI     + +  ++++  ++ ++ F K+LKK         + ++  K    L  
Sbjct: 141 MENCKRFIRTLEEKSLSPQTIRLRITALEKFSKWLKK--------PIELKRPKMKRKLDV 192

Query: 128 --ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
                E++   L+D +   ++ +           + +L   G R+SE    T ++I+  +
Sbjct: 193 NNVPTEEEYNRLLDFLKTKSNKD-------YYFFIKVLGTTGARLSEFQQFTWEDIISGE 245

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            TLR  GKG+K R       +++    Y          + +  +F   R  P+    F +
Sbjct: 246 VTLR--GKGNKYRRFFFQKQLQQEAKAY-------AKEHGKTGIFAVGRFGPITQRGFSQ 296

Query: 246 YIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN-S 303
           +++   ++ G+      AH  RH FA   L    D+  +  +LGH  + TT+IY   +  
Sbjct: 297 HLKAWGKHCGIDSRKMHAHAFRHFFAKMFLKKNKDVIQLADLLGHGSVDTTRIYLQKSYD 356

Query: 304 KNGGDWMMEI 313
           +   D+   +
Sbjct: 357 EQKRDFNRNV 366


>gi|113867686|ref|YP_726175.1| phage integrase family protein [Ralstonia eutropha H16]
 gi|113526462|emb|CAJ92807.1| phage integrase family protein [Ralstonia eutropha H16]
          Length = 566

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 71/318 (22%), Positives = 125/318 (39%), Gaps = 40/318 (12%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           E ER LS LT +    D   +  F+      +  +   R  +  + R F     T  +  
Sbjct: 257 ERERPLSSLTTE----DATAYRSFVRRPAPRERWVGPARPRTSPDWRPF-----TGSLSA 307

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           RS   +LS + +  ++L +++    +    ++      S+  AL+   A T  + +L+ T
Sbjct: 308 RSTAHALSVLGAMFRWLIQQRYVLANPFAGIKVRGGGRSV--ALDSSHAFTEGEWLLIRT 365

Query: 146 -SHETKWIDARN-------SAILYLLYGCGLRISEALSLTPQNIMDD---QSTLRIQGKG 194
            +   +W    +         +L   Y  GLR SE +  T  ++  D      L++ GKG
Sbjct: 366 IADGLEWSYGWDGPAAQRLRFVLDFGYATGLRASELVGATLGDVESDPHGDHWLKLVGKG 425

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLN-------PGVFQ 244
            K   V L P  R A+  Y       +     +   PL  G+   P +        GV +
Sbjct: 426 AKAGKVALPPLARLALDSYLVERGLPVTPARWDPHTPLIGGLGQDPASGITGTRLWGVLR 485

Query: 245 RYIRQLRR--------YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           R+ RQ+                  + H +RH+ ATH L+ G +L +++  L H  +STT 
Sbjct: 486 RFFRQVADLIQADHPSAADKLRQASPHWMRHTHATHALARGAELTTVRDNLRHASISTTS 545

Query: 297 IYTNVNSKNGGDWMMEIY 314
           IY + +       +   +
Sbjct: 546 IYLHGDEMKRARQIGAAF 563


>gi|187940078|gb|ACD39211.1| phage integrase [Pseudomonas aeruginosa]
          Length = 379

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 78/363 (21%), Positives = 131/363 (36%), Gaps = 68/363 (18%)

Query: 4   NNLPEIVSFEL--LKERQNWLQNLEIERGL--SKLTLQSYECDTRQFLIFL--AFYTEEK 57
              P I++ EL  + E   +L    + RG   SK T  SY      +L FL  A      
Sbjct: 18  PGFPIILTAELRSIPEVSAFLIYRCLHRGRVESKHTWASYGQALYDYLGFLNAANRDWRD 77

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN--ILN 115
           +    +        R +    R+  + + ++   L  + SF  Y +++         +  
Sbjct: 78  VGFFELGSSPLAAYRDW--SMRSCGLSENTINLRLRVVCSFYNYARRQGWIERVPYDVET 135

Query: 116 MR-----------------------NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           +R                        +K   +  + L ++Q    +++V   T       
Sbjct: 136 VRVAVHSVFLAHVDVTGGYVASPDILVKGKRTAIKVLTKEQVRIFLNSVSCSTQ------ 189

Query: 153 DARNSAILYLLYGCGLRISEALSL------TPQNIMDDQSTLRIQG-------KGDKIRI 199
                 I  L    GLR  E L+        P  I    S  R+         KG+K R 
Sbjct: 190 ----KLIARLALSSGLRKEELLTFPSSYIFDPAQISKGSSHFRVFCSPKDMELKGNKARE 245

Query: 200 VPLLPSVRKAILEYYDL---CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           + +  S+  A+ +Y           +    +PLF    G P +P    + +  + + LGL
Sbjct: 246 IDIPRSLMAALWQYKIHERNRSMQTSCVESIPLFLSRYGVPYSPKG--QSLNHMWKDLGL 303

Query: 257 PLSTTAHTLRHSFATHLLSNGG-------DLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           P + T H LRH++ATH L +          L  ++  LGH  ++TTQ Y ++ S    D 
Sbjct: 304 PFTVTPHMLRHTYATHTLHDMRRRKSVIDPLLYVRDRLGHSSVATTQRYLHLISMIEDDV 363

Query: 310 MME 312
           M E
Sbjct: 364 MGE 366


>gi|294782426|ref|ZP_06747752.1| integrase/recombinase [Fusobacterium sp. 1_1_41FAA]
 gi|294481067|gb|EFG28842.1| integrase/recombinase [Fusobacterium sp. 1_1_41FAA]
          Length = 328

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 64/301 (21%), Positives = 127/301 (42%), Gaps = 29/301 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTI----RQLSYTEIRAFISKR-RTQKIGDR 86
           S+ T++ Y    + FL F+ +  E   +I  +    + +   ++ A+I      +K+   
Sbjct: 33  SEKTVKDYMFHLKDFLHFV-YEGENDFSISEVIPLMQDIEKEDVEAYIVHLFEDRKLKKT 91

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL--NEKQALTLVDNVLLH 144
           S+   LS +KS  K L+   +  ++ +  ++  K + ++   L  +      ++    + 
Sbjct: 92  SVNTILSALKSLYKELESNGL--KNPVKYIKLFKVNRNIENVLKVSIDDIRKIIGLYKID 149

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR---IQGKGDKIRIVP 201
           +  +      RN  ILY L+  G+R  E L+L  ++ +  +       +Q K  K    P
Sbjct: 150 SEKK-----YRNITILYTLFYTGMRSKELLTLQFKHFLRREDEYFFKLVQTKSGKDVYKP 204

Query: 202 LLPSVRKAILEY----YDLCPFDLNLNIQLPLFRG--IRGKPLNPGVFQRYIRQLRRYLG 255
           +  S+ K + EY     ++   D     +  +F    +   PL+       I+ + +   
Sbjct: 205 IHKSLVKKLEEYRSYLMNMYSLDSKDLDEHYIFATSVLNNSPLSYRSLNVIIQDMGKL-- 262

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN---VNSKNGGDWMME 312
           +    + H +RH+ AT L  NG D+  I+  LGH     T++Y N   V  K   + + E
Sbjct: 263 IEKDISPHNIRHAIATELSLNGADILEIRDFLGHSDTKVTEVYINARSVLEKKVLEKLPE 322

Query: 313 I 313
           I
Sbjct: 323 I 323


>gi|86159979|ref|YP_466764.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776490|gb|ABC83327.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 275

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 101/273 (36%), Gaps = 28/273 (10%)

Query: 49  FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT 108
            L  +       + +  +   EI  F +K+  +    +S+   L+ ++  L    + ++ 
Sbjct: 1   MLKTHLSPFFGKKKLIDIGPAEIEEFKAKKLAEGQSKKSINNHLAALRKLLNLAVEWEVI 60

Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
             +       +K   +    + E+Q LT  +   L  +   +W        +      GL
Sbjct: 61  PRAP-----KVKGFRAKTEYITEEQFLTFDEAERLVHAAAPEW-----RTFIITALKTGL 110

Query: 169 RISEALSLTPQNIMDDQSTLRIQG----------KGDKIRIVPLLPSVRKAILEYYDLCP 218
           R+ E L+L  +++      L ++           KG + R VPL       +  +  L  
Sbjct: 111 RVGELLALKWEDLDLVAGQLVVRRTLWHKQEGPPKGGRNRKVPLSDEAIAVLKAHRHL-- 168

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
                     +F    G+ L     +  +    R   L    T H LRH+FA+HL+  G 
Sbjct: 169 ------KGTYVFCEADGRRLTHSRVKDVVPSTCRRAQLAKRLTTHGLRHTFASHLVMRGV 222

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            L +++ +LGH  +     Y++++     D + 
Sbjct: 223 SLMAVKELLGHESIEMPLRYSHLSPDVKRDAVK 255


>gi|294505690|ref|YP_003569751.1| Tyrosine recombinase xerD [Salinibacter ruber M8]
 gi|294342129|emb|CBH22793.1| Tyrosine recombinase xerD [Salinibacter ruber M8]
          Length = 191

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 10/194 (5%)

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           + + LP+ L E +   L+        ++  +   R+   +  +   GLR SEA +L P++
Sbjct: 3   RPDKLPKILTEAETDRLL-----AQPNQRYFGPHRDYLYMRAMLKAGLRASEATALRPEH 57

Query: 181 IMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           I      L ++ GKG K R + +   + + +  + D             L    +   + 
Sbjct: 58  IDLMSGKLMVREGKGAKDRTLWIGEELLEELQAWMDRR--KATAPGADYLLPTSKSTQVA 115

Query: 240 PGVFQRYIRQLRRYLGLPL--STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
               +R +++      +      + HTLRH+FAT L    G +R +Q  LGH  LSTT I
Sbjct: 116 TSHLRRSVKRYAEGANIEEVGRVSPHTLRHTFATRLYQETGKIRLVQKALGHSDLSTTMI 175

Query: 298 YTNVNSKNGGDWMM 311
           YT+V  +     M 
Sbjct: 176 YTHVVDEELEGAMK 189


>gi|294506890|ref|YP_003570948.1| Integrase [Salinibacter ruber M8]
 gi|294343218|emb|CBH23996.1| Integrase [Salinibacter ruber M8]
          Length = 261

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 94/253 (37%), Gaps = 50/253 (19%)

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +    + + + ++     +      K    LP  L+ ++   L               
Sbjct: 9   RALIFLYEQVLEIELDDIGPLDRADRPK---RLPTVLSREEVRQLF----------AALS 55

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAIL 211
              N  I +LLYG GLR+SEAL L  + +    S L ++ GKG K R   L   +   + 
Sbjct: 56  PGPNRLIAHLLYGSGLRLSEALRLRVKELDVGTSRLHVRDGKGRKDRTTVLPERLHGPLR 115

Query: 212 ------------------------------------EYYDLCPFDLNLNIQLPLFRGIRG 235
                                               E+     F      + P    +R 
Sbjct: 116 RHLKTVKAQHEADCADGVGGVYLPDAIAEKHPNAKTEWRWQYVFPSTTLSEDPRSGAVRR 175

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
              +    QR ++       +    T HTLRHSFATHLL +G D+R+IQ +LGH +L TT
Sbjct: 176 HHRSDSAVQRAVKNAADAADIEKRATCHTLRHSFATHLLQDGTDVRTIQKLLGHEQLRTT 235

Query: 296 QIYTNVNSKNGGD 308
             Y +V  ++G D
Sbjct: 236 MQYIHVLEQSGAD 248


>gi|163855346|ref|YP_001629644.1| integrase/recombinase [Bordetella petrii DSM 12804]
 gi|163259074|emb|CAP41373.1| integrase/recombinase [Bordetella petrii]
          Length = 402

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/305 (20%), Positives = 118/305 (38%), Gaps = 26/305 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +LQ+L  + G++  +L+++     +   FL  +      I+  R +    I ++I  
Sbjct: 114 FEGFLQHLSAQ-GVAPGSLRTWRSRLFRLEYFLLHH-----GIEEFRLIRIQHINSYIES 167

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQAL 135
                    ++  +L  +K   +Y        E   N + +   ++   LP   +  +  
Sbjct: 168 LA--GFSSNTVGSTLRILKQLFQYACSNGFHVESFDNAIPIVRRQRRQRLPTVFSVGETE 225

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-RIQGKG 194
            ++          +  +  RN AI  LL   GLRIS+   L   +    ++ +  +Q K 
Sbjct: 226 KIL-----SAIDRSNALGKRNYAIFLLLARMGLRISDVRGLMFHHFDWSRNVISIVQQKT 280

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN--PGVFQRYIRQLRR 252
            K   +P++  V  AI++Y      +   + + PL       P +       + + Q  R
Sbjct: 281 KKPVDLPIMDEVGWAIIDYL----RNGRPHSECPLVFIKHIAPFDGLTSALHQQMLQYLR 336

Query: 253 YLGL----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
              +          H+LRHS AT LL     +++I   LGH  + +T  Y  VN      
Sbjct: 337 RADIHVPANKPRGVHSLRHSLATTLLQKQVPIQTISHTLGHLDIGSTSGYVQVNLPQLRL 396

Query: 309 WMMEI 313
             +E+
Sbjct: 397 CALEV 401


>gi|296269704|ref|YP_003652336.1| integrase family protein [Thermobispora bispora DSM 43833]
 gi|296092491|gb|ADG88443.1| integrase family protein [Thermobispora bispora DSM 43833]
          Length = 317

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/305 (20%), Positives = 108/305 (35%), Gaps = 23/305 (7%)

Query: 1   MEGNNLPE--IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI 58
           M    +PE    +  L    Q +L +L+     S  + ++ +    +    +        
Sbjct: 1   MNVPAVPERNTPARPLRDPYQAYLDSLQ-----SPESRRTMKGCLDRIARLITGDPRATG 55

Query: 59  TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT--TESNILNM 116
             Q   +L Y       S  R Q      + + L  ++  LK   +  +    +      
Sbjct: 56  AGQPWERLRYEHTVRLRSLMREQGWSPAHVNKHLVALRRVLKEAWRLGLMSGEDYQRATD 115

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
               +   LP   + +    ++   L     +      R+ A+L LLY  G R +E  +L
Sbjct: 116 LPPYRHTRLPAGRHVE--PEMLAAALRVCDADESPAGRRDGALLALLYSTGCRRAEVAAL 173

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--- 233
           T  +      +LR++GKGDK R V L  +  + +  +  +           PLF  I   
Sbjct: 174 TLADFDPWDRSLRVRGKGDKERFVYLTVAAAERLDRWLAVR-----GRADGPLFCPINKA 228

Query: 234 ---RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
              R   +        + +     G     T H  R +F   LL  G DL + Q+++GH 
Sbjct: 229 GRLRLAHMTGQAIADIVTRRLTAAGAAKR-TPHDFRRTFIGELLDAGVDLATAQALVGHA 287

Query: 291 RLSTT 295
             +TT
Sbjct: 288 SPATT 292


>gi|256375754|ref|YP_003099414.1| integrase family protein [Actinosynnema mirum DSM 43827]
 gi|255920057|gb|ACU35568.1| integrase family protein [Actinosynnema mirum DSM 43827]
          Length = 325

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/312 (17%), Positives = 106/312 (33%), Gaps = 23/312 (7%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQF---------LIFLA 51
           M    LP   + +      +W ++L   +   + T  +Y+    Q          L F  
Sbjct: 1   MPPERLPRPTAAQWSTWLDDWDRSLRA-KNHPRTTRYNYQLAVTQLADYLLHELALDFDT 59

Query: 52  FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111
                    +    +    + AF+    T      S K     ++ F  Y+ + +     
Sbjct: 60  RPPNTAEAAKDPIAVRRPHVEAFVIWM-TDTRSAASAKSKFKALQQFFNYIAEEEELDHH 118

Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
            +  MR  K      R + ++Q    +            +   R+ A++ L +  G R++
Sbjct: 119 PMAKMRQPKVDEKQRRVIPDEQIAAFL-----AALEGKDYRSRRDFALVRLYFETGGRLA 173

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           E ++    ++      L ++GKG K R +P      +A+  Y       L       L+ 
Sbjct: 174 EVVNAGLGDLDLKLDVLHVRGKGGKHRSLPFAAKTGQAVTRYLRARERHLAGRESAALWL 233

Query: 232 GIR-----GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
                     PL     +   R+    +G      AH  RH+F+ + L NGG    +  +
Sbjct: 234 PENLPKGAPTPLTVSAVKSMFRRRADAVG--PRIHAHLFRHTFSHNWLRNGGSETDLMRL 291

Query: 287 LGHFRLSTTQIY 298
           +G    +  Q+Y
Sbjct: 292 MGWSTRAMLQVY 303


>gi|126175754|ref|YP_001051903.1| phage integrase family protein [Shewanella baltica OS155]
 gi|125998959|gb|ABN63034.1| phage integrase family protein [Shewanella baltica OS155]
          Length = 311

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 122/299 (40%), Gaps = 23/299 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L I    S+ ++ S      + + +     ++K+     +Q    +IRA ++    
Sbjct: 10  YLSRLSIN---SQRSISSQMRSIARLMQWQEDCLDDKLCQIDYQQ--ALQIRAVMTH--- 61

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPRALNEKQALTL 137
            +   RS+ R++  IK+ +K          S + N++ +   K        L+ +Q   +
Sbjct: 62  AQWSARSINRAMIAIKNIVKVAALMNKADLSQVANLQTINQVKHGEHQGTPLSTEQVTAV 121

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDK 196
           +D +             RN  I  L  G GLR SE  +L   +   +  TL +  GKG+K
Sbjct: 122 LDYLRAQ----KGTFATRNLVIFSLFLGTGLRRSELSALMLSDYDANLHTLTVAAGKGNK 177

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYL 254
            R + L   V + +L +  L        +      G     +P +P    R ++     L
Sbjct: 178 SRTLFLPEWVEQNLLAWLKLRQRQQGYLVCKSTLTGKLKLTEPTSPTALYRLVKDTLYEL 237

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           G+  + + H LR +F T LL    D+ +++ + GH  +STT IY     K    +M + 
Sbjct: 238 GVD-NVSPHDLRRTFITRLLEQNVDINTVRQMAGHADISTTTIY----DKRDHAFMKQA 291


>gi|315918974|ref|ZP_07915214.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313692849|gb|EFS29684.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 266

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 52/300 (17%), Positives = 113/300 (37%), Gaps = 41/300 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             +++  L      S  T+  Y    R++  +               +L+    R FI  
Sbjct: 2   LNDFIIWLTDNNDYSSHTIDVYYTSLRKYFEYA-------------NELNMDNCRRFIKS 48

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR--ALNEKQAL 135
              +K+   +++  ++ I+ F K++KK         + ++  +    L       E++  
Sbjct: 49  LEEEKLSPATIRLRITAIEKFSKWVKK--------PIELKRPRMKRKLDVNNVPTEEEYN 100

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L++ +          ++      + +L   G R+SE    T ++I      + ++GKG+
Sbjct: 101 RLLEYL-------KTKLNKDYYFFIKVLGTTGARLSEFQQFTWEDI--ATGEVVLKGKGN 151

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R       +++ + +Y         L +        R  PL      ++++   ++ G
Sbjct: 152 KYRRFFFQKQLQREVKDYIKETGKSGTLAVG-------RFGPLTQRGLSQHLKVWGKHCG 204

Query: 256 LP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN-SKNGGDWMMEI 313
           +      AH  RH FA   L    D+  +  +LGH  + TT+IY   +  +   D+   +
Sbjct: 205 IDSKKMHAHAFRHFFAKMFLKKTKDVIQLADLLGHGSVDTTRIYLQKSYDEQQRDFNKNV 264


>gi|253567964|ref|ZP_04845375.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251842037|gb|EES70117.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 266

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/300 (17%), Positives = 113/300 (37%), Gaps = 41/300 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             +++  L      S  T+  Y    +Q+  +               +L+    R FI  
Sbjct: 2   LNDFIIWLTDNNDYSLHTVDIYHTSLKQYFEYA-------------NELNMDNCRRFIKS 48

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR--ALNEKQAL 135
              +K+   +++  ++ I+ F K++KK         + ++  K    L       E++  
Sbjct: 49  LEEEKLSPATIRLRITAIEKFSKWVKK--------PIELKRPKMKRKLDVNNVPTEEEYN 100

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L++ +          ++      + +L   G R+SE    T ++I      + ++GKG+
Sbjct: 101 RLLEYL-------KTKLNKDYYFFIKVLGTTGARLSEFQQFTWEDIAI--GEVVLKGKGN 151

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R       +++ + +Y         L +        R  PL      ++++   ++ G
Sbjct: 152 KYRRFFFQKQLQREVKDYIKETGKSGTLAVG-------RFGPLTQRGLSQHLKVWGKHCG 204

Query: 256 LP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN-SKNGGDWMMEI 313
           +      AH  RH FA   L    D+  +  +LGH  + TT+IY   +  +   D+   +
Sbjct: 205 IDSKKMHAHAFRHFFAKMFLKKTKDVIQLADLLGHGSVDTTRIYLQKSYDEQQRDFNKNV 264


>gi|90577779|ref|ZP_01233590.1| integrase/recombinase [Vibrio angustum S14]
 gi|90440865|gb|EAS66045.1| integrase/recombinase [Vibrio angustum S14]
          Length = 480

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/292 (21%), Positives = 118/292 (40%), Gaps = 30/292 (10%)

Query: 43  TRQFLIFLAFYTEEKITIQTI--RQLSYTEIRAFISKR-------RTQKIGDRSLKRSLS 93
              F  F      E+     I    +  + +++F+S R       R +     +    L 
Sbjct: 194 LEAFSCFCIRSCVERFDWSRILYAPILQSTMQSFLSDRIDNQISDRKKAYAPATADNLLR 253

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLP----RALNEKQALTLVDNVLLHTSHET 149
            ++   ++    ++ +   +  ++ +K          R L+  +   +    L+    + 
Sbjct: 254 MLRGVAQHAWLAELISVETLERIKAIKLPRGSRQSSGRYLSYNELDHISAITLIQ---KN 310

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL--LPSVR 207
           K    R++AI +L+Y  GLR +E +++   +I  D+  LR+ GKG+K R VP      + 
Sbjct: 311 KTKALRDNAIFWLMYEAGLRRAEVVNINTYDIDMDRCQLRVVGKGNKERYVPFSRNSDLY 370

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIR------GKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            A+ ++  +   + N N+   LF  I          L         ++L   LG     +
Sbjct: 371 NAMEKWLAIRQQNFNPNL-PALFCTINRYQTLTYMRLTTQTLNDLCKKL-NMLGFSRVVS 428

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            H  RHS AT+LL +G DL  +   +GH  ++TTQ Y     +   D +  +
Sbjct: 429 PHDFRHSVATNLLRSGYDLLLVSKFMGHSSITTTQRY----DRRTDDDLKGV 476


>gi|281426313|ref|ZP_06257226.1| integrase [Prevotella oris F0302]
 gi|281399555|gb|EFB30386.1| integrase [Prevotella oris F0302]
          Length = 406

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 68/319 (21%), Positives = 132/319 (41%), Gaps = 31/319 (9%)

Query: 14  LLKERQNWL----QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLS 67
           LL+    +L    + + I+R L    L++Y+      L  L  Y ++K  +  I   QL 
Sbjct: 110 LLESFSEYLTQTKERIGIDRALKTFKLRTYQ------LSLLREYVQKKHRVSDIPLSQLD 163

Query: 68  YTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
            + I  F       +K+   S+  +LS ++  ++   K+ I          + ++    P
Sbjct: 164 KSFIEGFEYYLTIDRKLKRSSISSALSTLQIIVRMAVKKGILDFYPFFGY-SYERPKGEP 222

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R++ + +   ++D   L    E   I  R+  I       GL IS+  +L  +NI+ ++ 
Sbjct: 223 RSITQDELQRIID---LEIEWENYRI-VRDLFIFSCF--SGLAISDVRNLREENIVLEEG 276

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            + I+G+  K +    +  +  A+                +P             +    
Sbjct: 277 EICIKGRRMKTKTPYRVQVLPPALAIMNRYRGIRAGFIFDVP----------TEDIIHNG 326

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +  ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQIY  V+S+ 
Sbjct: 327 MHHIQRNIGMESPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLQTTQIYAAVSSER 386

Query: 306 GGDWMMEIYDQTHPSITQK 324
               M ++  +   + T K
Sbjct: 387 IHRDMQKVQQRIQDTFTLK 405


>gi|170079366|ref|YP_001736004.1| tyrosine recombinase [Synechococcus sp. PCC 7002]
 gi|169887035|gb|ACB00749.1| Tyrosine recombinase [Synechococcus sp. PCC 7002]
          Length = 321

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 59/283 (20%), Positives = 110/283 (38%), Gaps = 16/283 (5%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEE-KITIQTIRQLS----YTEIRAFISKRRTQ 81
           +E   S  T ++Y+ D R F  F+A   E   + ++    L        +  + +  R  
Sbjct: 25  LENQKSPHTWRAYKKDIRDFFRFVADANEPTPLLVEAFLNLEQPQALALVLRYKNHLRDV 84

Query: 82  K-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + + + ++ R L+ +K+ ++   +           +  +K    + R  +       V  
Sbjct: 85  RCLKEATINRRLAALKALVRLANQLGQCR----YTLGGIK-GEKVSRYRDTTGISQTVYR 139

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +L   ++      R+ AIL LL+   LR +E +    +++  ++ +L I GKG   +  
Sbjct: 140 QILKIPNQKTIKGKRDYAILRLLWDNALRRNEIVQTNLEDLDLERRSLAILGKGKGRQKQ 199

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLF----RGIRGKPLNPGVFQRYIRQLRRYLGL 256
            +  S          L     + N   PLF    R   G  L      + +R   +  G+
Sbjct: 200 WVTLSAATIAALKAWLAVRPGSKNKIQPLFVALDRAHLGHRLTGTAIYQLVRNTAKAAGV 259

Query: 257 PLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIY 298
               + H +RHS  T  L    GD+R +Q    H  L+T  IY
Sbjct: 260 TKLLSPHRIRHSGITAALDATNGDVRKVQKFSRHADLNTLMIY 302


>gi|242279119|ref|YP_002991248.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
 gi|242122013|gb|ACS79709.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
          Length = 395

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/293 (20%), Positives = 114/293 (38%), Gaps = 30/293 (10%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
            SK   +S+  D  +F + L     +      +  L    I    S    + +   ++K 
Sbjct: 114 YSKNNKKSWRHDCTRFRLHLQPVIGQIY----LDDLRLKHIEELKSVVTKKGLSKGTIKH 169

Query: 91  SLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
            L+  +    Y  KR   T ++ +  ++  K +N   R  + ++     +      +   
Sbjct: 170 CLTLARQICYYAIKRGWLTGDNPVKGIKFPKPNNRRLRYCSVEE-----EYDFFEMAVNM 224

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
            + +  +  +L L    G+R+ E  +LT Q+I   ++ + I+G+           S    
Sbjct: 225 GYSECHDICLLSL--YTGMRMGEIFALTRQDIDLVENRIIIKGRSGADDGPKAGGSRVAY 282

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYI----RQLRRYLGLPLSTT-- 261
           I+E          L  +L LF+G      P   G  ++ I      L ++LG     T  
Sbjct: 283 IIEKIRPM-----LENRLALFQGREALIFPKPNGGIRKCIGPDFATLMKHLGWNDGVTDR 337

Query: 262 -----AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                AH  RH+FA+ L++ G  L  ++ +LGH  + TT  YT+   +   D 
Sbjct: 338 RLRFCAHCFRHTFASRLIAKGAPLTVVKKMLGHSNIQTTMRYTHTQDEQCRDA 390


>gi|160874839|ref|YP_001554155.1| integrase family protein [Shewanella baltica OS195]
 gi|160860361|gb|ABX48895.1| integrase family protein [Shewanella baltica OS195]
          Length = 210

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 90/192 (46%), Gaps = 20/192 (10%)

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           +  K+ + LP+ L+ +    L+ +            + +  A+L L YGCGLR+SE   +
Sbjct: 13  KAPKRPHKLPQLLSCQDIAALLCHC----------QNLKQRAMLALCYGCGLRVSELTHI 62

Query: 177 TPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
              +I   +  L++ QGKG   R+V + P++   + +Y+              LF     
Sbjct: 63  KVADIDGQRQLLKVCQGKGAYDRLVIISPTLLTLLRQYWRAYH------PVEWLFASTYH 116

Query: 236 ---KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
               PL+   F++ + +  R   +    + H+LRH++ATH L  G  L  +Q+ LGH  +
Sbjct: 117 DVVYPLHESTFRKALAKAARLASITKPCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSI 176

Query: 293 STTQIYTNVNSK 304
            +T+ Y + + +
Sbjct: 177 KSTERYLHWSPE 188


>gi|196048148|ref|ZP_03115325.1| integrase/recombinase, phage integrase family [Bacillus cereus
           03BB108]
 gi|196020885|gb|EDX59615.1| integrase/recombinase, phage integrase family [Bacillus cereus
           03BB108]
          Length = 368

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 71/351 (20%), Positives = 128/351 (36%), Gaps = 47/351 (13%)

Query: 10  VSFELLKERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL-----------AFYTEE 56
              E  KE+  W  ++ +E +  LS  TL  Y  +   FL +L                 
Sbjct: 11  ARVERHKEKMPWYIIEYIEEKTNLSPATLYGYLIEYEMFLQWLISSRLATSDGEGVTRIH 70

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY-------LKKRKITT 109
           ++ I+T+  L   +++ F S    Q    +++ R+ S +KS   Y               
Sbjct: 71  EVPIETLEHLPLKQVKRFKSYLERQGNKTKAVIRTFSALKSLFNYLTSNTEDDNGECYFY 130

Query: 110 ESNILNMRNLKKSN--------------------SLPRALNEKQALTLVDNVLLHTSHET 149
            + +  M   K+                         R L+  +   ++           
Sbjct: 131 RNVMAKMEIHKEKIDAAARAKEISEVIFHNNDDIKFMRFLS-NEYEQMLQETAPGKLRFF 189

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           K    R+ AIL L+ G GLR+SEA SLT  +I      +++  KGDK   +    +    
Sbjct: 190 KRDRERDIAILSLILGTGLRVSEAASLTISSINFRTRYIKVIRKGDKKSSILATQTALDD 249

Query: 210 ILEYYDLCPFDLN-LNIQLPLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           + EY  +        N +  LF          ++    Q+   +  R        + H L
Sbjct: 250 VQEYLKVRANRYKCPNDEDILFVTNYKGSYAQISVNAIQKLTEKYTRA--FDEKKSPHKL 307

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           RH++AT+  +   DL  + + +GH  + TT +YTN++       +  +  +
Sbjct: 308 RHTYATNHYNENKDLVLLANQMGHNSMETTSLYTNIDDTKRRAAIERLEQR 358


>gi|219667494|ref|YP_002457929.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
 gi|219537754|gb|ACL19493.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
          Length = 317

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/289 (21%), Positives = 117/289 (40%), Gaps = 20/289 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
             + ++ +L+   +   LS+ TL+ YE     F  F+       ++     +++   I  
Sbjct: 20  FTELQKRYLKKCLV-NNLSEYTLRFYEVSCNTFNKFI------DLSQLMASEVNRDLIDN 72

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +I   R   +   ++   + GI   +KY     +  +        +K +  + +     +
Sbjct: 73  YILYLRNTGVKAVTINTYIHGISPIIKYGMSLGLIEK---FGFNEIKTTEEIKQIYTPHE 129

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QG 192
                  +LL   +   + + RN  I+  L G G+R  E  S+  ++I    S L + + 
Sbjct: 130 L-----QILLKKPNMKSFAEYRNWVIINFLLGTGVRALELRSIRIKDIDLKMSMLIVPRT 184

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K  K R +P+  S+ K + +Y D    +   + +  LF    G+ L     Q  I +  +
Sbjct: 185 KNGKQRYIPISKSLNKILTDYLDYRKAE---SEEDFLFCNEFGQYLPRTTLQIGITKYCK 241

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             G+    + H  RH+FA   + N G L  +Q ILGH  L     Y N+
Sbjct: 242 KRGVNKY-SLHLFRHTFANMWIVNNGSLFILQKILGHASLKQVNHYANL 289


>gi|300813158|ref|ZP_07093534.1| site-specific tyrosine recombinase XerS [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300495873|gb|EFK31019.1| site-specific tyrosine recombinase XerS [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 358

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/355 (17%), Positives = 132/355 (37%), Gaps = 42/355 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYT 54
           ME      ++  E + +  ++++  ++E   S  T   Y  + R+F  +L         +
Sbjct: 1   METKKYLSLIDRE-MAQMPDFVKEYQLETRHSLTTSYQYLTEIRRFFSWLIAENFTQAKS 59

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKI------GDRSLKRSLSGIKSFLKY------- 101
             ++    + +LS +++  ++ K    +          ++ RSL+ ++S  KY       
Sbjct: 60  PSQVLPSDLEKLSRSDVMLYLDKLEHSRNKQGHLNSPTTVNRSLNALRSLYKYLTITADK 119

Query: 102 LKKRKITTESNILNMRNLKKSNSL---PRALN--------EKQALTLVDNVLL-----HT 145
                    + +L + +L  +++L     AL         + Q +  +D           
Sbjct: 120 NNGEPYFDRNVMLKINSLPYTSTLNYRAHALEAHMYTGNLKYQFMDFLDQKFAGLCSGRA 179

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
               K    R+ A++ L+ G G+R+SE   +  +++   ++TL I  KG +   VP+   
Sbjct: 180 LSSFKQNKERDMAVIALILGTGIRVSECAGVDIKDLNLKEATLDITRKGGQRDSVPVADW 239

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFR----GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
               + +Y  +             F         + +     ++ + +     G P   T
Sbjct: 240 TLPYLEKYLAIRADRYKAPATNKAFFLTSYHQECRRMTTNAIEKMVGKYSAAFGHP--LT 297

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            H LRH+ A+ L     D   +   LG    S T +YT+V+ +     +     Q
Sbjct: 298 PHKLRHTVASELYQATKDQVMVAQQLGQKGTSATDLYTHVDQREQRAALNASAKQ 352


>gi|291087774|ref|ZP_06347445.2| site-specific DNA tyrosine recombinase, XerD [Clostridium sp.
           M62/1]
 gi|291073872|gb|EFE11236.1| site-specific DNA tyrosine recombinase, XerD [Clostridium sp.
           M62/1]
          Length = 286

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 66/315 (20%), Positives = 130/315 (41%), Gaps = 35/315 (11%)

Query: 1   MEGNNLPEIVSFEL-LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
           ME   + ++   E  ++  + +L  +E E+  S  T++ Y  D R F  FL    EEKI 
Sbjct: 1   MEKIAMKKMKMTEAKMEAYRIYL--MESEK--SPSTIEKYLRDIRNFYQFL---PEEKI- 52

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
                 +    +  +  +    K    S    +  +  FL ++   ++        ++  
Sbjct: 53  ------IDREAVLLYKRQLIP-KYQISSANSMIIAVNGFLSFMGLEEL-------RVKVF 98

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K   ++   +++ +     +  +       +   +R S IL  L   G+RISE + +T +
Sbjct: 99  KFQRAM---VSDPEREIQREEYIRLVEEAERMGKSRLSLILQTLGATGIRISELVCITRE 155

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
            +   ++ + ++GK    R+V L   +R+ +  Y        N     P+F    GKP++
Sbjct: 156 AVSSGRAAVNLKGKM---RVVILPKRLREKMEIYCRE-----NQIYSGPVFVTRGGKPVD 207

Query: 240 PGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                  ++ L +  G+       H LRH FA     N  D+  +  ILGH  + TT+IY
Sbjct: 208 RSNIWSEMKILCKTAGINEKKIFPHNLRHLFARIYYKNNHDIVYLADILGHSSVETTRIY 267

Query: 299 TNVNSKNGGDWMMEI 313
           T+++       + ++
Sbjct: 268 TSISGFEHEKVLEDM 282


>gi|16519924|ref|NP_444044.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
 gi|2497423|sp|P55639|Y4RF_RHISN RecName: Full=Putative integrase/recombinase y4rF
 gi|2182603|gb|AAB92472.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
          Length = 425

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 115/294 (39%), Gaps = 14/294 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++   L   RGL   T +      R+FL +           Q +  L+   + A +  R 
Sbjct: 131 SFSDYLRTVRGLEPKTREGILLGGRRFLDWFRHRHPG----QNLEALTAEHVLAAVEHRL 186

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLPRALNEKQALTL 137
           +      +   + S I++FL++L       +     +          LP  L        
Sbjct: 187 SLSATSGTRTAATSHIRTFLRFLCWAGHHRQDLARIVPRTPYWRLAHLPPRLAWGDVRRA 246

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDK 196
           +D +   T      +  R+ A+L LL   G+R  E  ++  Q+I      + I+  KG +
Sbjct: 247 IDAIGATTP-----VAIRDRAVLLLLATTGIRNGELRAIRLQDIDWRTGEVFIRRTKGKR 301

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+VPLL     A+++Y       ++       F    G   +     R +R+  R+ G+
Sbjct: 302 DRVVPLLEETGAALVDYILRARPKVDSPYLFLSFTPPVGAFKSAAPVSRIVRKRLRHGGV 361

Query: 257 PLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            L     AH LRHS AT L+     +  +  +LGH  ++TT +Y  V +    +
Sbjct: 362 ELGRVAGAHLLRHSLATQLVGQRRPINEVADLLGHRSINTTALYVKVAASQLAE 415


>gi|330997656|ref|ZP_08321501.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329570184|gb|EGG51924.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 409

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/287 (21%), Positives = 118/287 (41%), Gaps = 25/287 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSLKR 90
           S  TL +Y     +   F++     K++     QL+   IR F       + +G ++++ 
Sbjct: 130 SHRTLPNYLYTRSRLADFVSSRF--KVSDLAFCQLNEQFIREFQEYVVIEKGLGVQTVRH 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L+ +K   +   K   + +    + +  K+  + PRAL+++    + D  L     E  
Sbjct: 188 YLAILKKICRIAFKEGHSDKFYFEHYKLPKQKETAPRALSKEDFEKIRDIELTGCRPEHS 247

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRI---QGKGDKIRIVPLLPSV 206
            +      +       G    + +++TP N   DD   L +   +GK  ++  V LLP  
Sbjct: 248 IV----RDMFLFACYAGTSYVDVVAITPDNLSRDDSGALWLKYRRGKNGQLSRVKLLPEA 303

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              I +Y D        + +  LF  I          +  +  ++  +G+    + H  R
Sbjct: 304 IDLIDKYRD--------DTRATLFPVIPY-----QALKWCLTSIKMKVGIKGRLSYHMGR 350

Query: 267 HSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           HSF+T + L NG  + ++  +LGH  + TTQ+Y  V  K   + M +
Sbjct: 351 HSFSTLMTLENGVPIETVSRMLGHADIRTTQVYARVTPKKLFEDMDK 397


>gi|254884980|ref|ZP_05257690.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|254837773|gb|EET18082.1| integrase [Bacteroides sp. 4_3_47FAA]
          Length = 368

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 54/310 (17%), Positives = 117/310 (37%), Gaps = 41/310 (13%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           +++S +  K   +++  L      S  T+  Y    + +  +               +++
Sbjct: 94  DVISEKNKKLLHDFIIWLTDNNDYSSHTVDIYYTSIKMYFEYA-------------NEVN 140

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-- 125
               R FI      K+   +++  ++ I+ F K++KK         + ++  K    L  
Sbjct: 141 MDNCRRFIKSLEEAKLSPATIRLRITAIEKFSKWMKK--------PIELKRPKMKRKLDI 192

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
                E +   L++ +          ++      + +L   G R+SE    T ++I    
Sbjct: 193 SNVPTENEYNRLLEYL-------KTKLNKDYYFFIKVLGTTGARLSEFQQFTWEDIAI-- 243

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             + ++GKG+K R       +++ + +Y         L +        R  PL    F +
Sbjct: 244 GEVVLKGKGNKYRRFFFQKQLQQEVKDYIKETGKSGTLAVG-------RYGPLTQRGFSQ 296

Query: 246 YIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN-S 303
           +++   ++ G+      AH  RH FA   L    D+  +  +LGH  + TT+IY   +  
Sbjct: 297 HLKAWGKHCGIDSKKMHAHAFRHFFAKMFLKKTKDIIQLADLLGHGSVDTTRIYLQKSYD 356

Query: 304 KNGGDWMMEI 313
           +   D+   +
Sbjct: 357 EQQRDFNKNV 366


>gi|315608606|ref|ZP_07883589.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
 gi|315249709|gb|EFU29715.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
          Length = 410

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 120/297 (40%), Gaps = 24/297 (8%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L  L  +R     T+ ++      F+  L+        I +I  ++   I  F+   +T 
Sbjct: 114 LDFLREQRRCEP-TIHNHRRLLSYFIAGLSQK-----GIDSICGITEKVIVEFVDHAQTC 167

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNLKKSNSLPRALNEKQALTLVD 139
           K            I+ F  +L +R +T+ +   +L   N  +   LP   +  +   +  
Sbjct: 168 K------SEHFYAIRQFCSFLYERGMTSTNLSYVLTRSNFPQHEKLPSVYSCDEIKQI-- 219

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR 198
                +  ++  +  R+ AI  L    GLR+S+  SLT  NI  D   + + Q K     
Sbjct: 220 ---EGSIEQSSAVGKRDYAIFLLASRLGLRVSDIASLTWDNIDWDNGKITLYQYKTKAPM 276

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP- 257
            +PLL  + +A++ Y        +L  ++ L      +P+        I ++ +  G+  
Sbjct: 277 ELPLLREIGEALVTYARDSRPKSHLK-EVFLTASAPYRPMTRISLNGVITRIMQSSGIDI 335

Query: 258 --LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                  H++RHS A+++L  G  L  I  ILGH    TT  Y  V+  N  + +++
Sbjct: 336 SSRRFGPHSMRHSLASNMLRQGTSLPVISGILGHESTQTTMEYLRVDIVNLRECVLD 392


>gi|228911572|ref|ZP_04075361.1| Integrase [Bacillus thuringiensis IBL 200]
 gi|228848075|gb|EEM92940.1| Integrase [Bacillus thuringiensis IBL 200]
          Length = 364

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/351 (19%), Positives = 129/351 (36%), Gaps = 47/351 (13%)

Query: 10  VSFELLKERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL-----------AFYTEE 56
              E  KE+  W  ++ +E +  LS  TL  Y  +   FL +L                 
Sbjct: 11  ARVERHKEKMPWYIIEYIEEKTNLSPATLYGYIIEYEMFLQWLLSSRLAVADGEVVTKIH 70

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY-------LKKRKITT 109
           ++TI+T+  L   +++ F S    Q    +++ R+ S +KS   Y               
Sbjct: 71  EVTIETLEHLPLKQVKRFKSYLERQGNKTKAVIRTFSALKSLFHYLTSNTEDDNGECYFY 130

Query: 110 ESNILNMRNLKKSN--------------------SLPRALNEKQALTLVDNVLLHTSHET 149
            + +  +   K+                         R L+  +   ++           
Sbjct: 131 RNVMAKVEIHKEKIDAAARAKEISEVIFHNNDDIKFMRFLS-NEYEQMLQETAPGKLRFF 189

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           K    R+ AIL L+ G GLR+SEA +LT  +I      +++  KGDK   +    +    
Sbjct: 190 KRDRERDIAILSLILGTGLRVSEAANLTISSINFRTRYIKVVRKGDKKSSILATQTALDD 249

Query: 210 ILEYYDLCPFDLN-LNIQLPLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           + EY  +        + +  LF          ++    Q+   +  R        + H L
Sbjct: 250 VQEYLKVRAVRYRCPDDEDILFVTNYKGAYAQISVNAIQKLTEKYSRA--FDEKKSPHKL 307

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           RH++AT+  +   DL  + + +GH  + TT +YTN++       +  +  +
Sbjct: 308 RHTYATNHYNENKDLVLLANQMGHNSMETTSLYTNIDDTKRRAAIERLEQR 358


>gi|224540991|ref|ZP_03681530.1| hypothetical protein CATMIT_00142 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526090|gb|EEF95195.1| hypothetical protein CATMIT_00142 [Catenibacterium mitsuokai DSM
           15897]
          Length = 417

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 68/304 (22%), Positives = 124/304 (40%), Gaps = 24/304 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             ++L + E    LSK T + Y    R  LIFL +  ++ IT   +  +  +    +I  
Sbjct: 120 FNDYLDHTE----LSKSTKKHY---IRISLIFLDYLNQKGIT--DVSYIDLSICNDYI-- 168

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLPRALNEKQAL 135
           R    +  +++++ + G++ FL+YL +  +        +     S    +P    E +  
Sbjct: 169 RTFTGMSFKTIEQHICGLRYFLRYLNEENVLESDVASLIHMPAISKSTKIPSVWTEDEIK 228

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-RIQGKG 194
            L+             I  R+ A++ L    GLRIS+  +L   N   ++  L  IQ K 
Sbjct: 229 KLL-----QAIDRNSPIGKRDYAMIVLACILGLRISDIKNLKFDNFNWEEKKLSIIQHKT 283

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRY 253
            K   +P+  +V  A+++Y          +  + L        L+        I    + 
Sbjct: 284 KKPLTLPIPDAVGWAVIDYIKNGRPKYYESKFIFLKHMPPFGSLSDENHLSDRIHFYMKK 343

Query: 254 LGLPLSTTAH----TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +PL+   H    +LRH+ A+ LL  G +L  I SILGH     T IY   +     + 
Sbjct: 344 AKIPLNKNCHRGFHSLRHTSASMLLDAGVELPVITSILGHSSTDITSIYLKTDLDKLKEC 403

Query: 310 MMEI 313
           ++++
Sbjct: 404 VLDL 407


>gi|284991929|ref|YP_003410483.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284065174|gb|ADB76112.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 365

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 52/328 (15%), Positives = 116/328 (35%), Gaps = 46/328 (14%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTR-QFLIFLAFYTEEKITIQTIRQ 65
           PE     +    + WL     + GL   TL  Y    R Q L     +         +  
Sbjct: 58  PERGRVTVEAWAEQWL---AAQTGLKPSTLYRYRSLLRAQILPRWGRHR--------LAD 106

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +++ ++ A++++     +   +++++   +   L    +      +    +   +   + 
Sbjct: 107 ITHADVAAWVAQLVAGGLAPPTVRQAHRVLALILTLAVRDGRIPRNPAAGVPLPRTRRAD 166

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           PR L  ++   L D    +              ++ LL   GLR  E  +L  + +   +
Sbjct: 167 PRFLTREEVERLADAAGEYGD------------VVRLLAYTGLRFGEMAALRVRRVDFLR 214

Query: 186 STLRI--------------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
             L +                K  + R VP+   + + +                L L  
Sbjct: 215 RRLTVAESATEVGGTVEYGTPKTHQQRTVPIPAVLVEPL-----SRRCGGKGRDDLVLTS 269

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
                  +    +R+     +  GL    + H LRH+ A+ L+++G +++++Q +LGH  
Sbjct: 270 PGGAVLRSGNFRRRFFDPAAKAAGLE-DLSPHDLRHTAASLLVASGANVKAVQRMLGHAS 328

Query: 292 LSTT-QIYTNVNSKNGGDWMMEIYDQTH 318
            + T  +Y+ +   + G  + +  D  H
Sbjct: 329 AAMTLDVYSGLFDDDLG-ALADRMDAAH 355


>gi|294785567|ref|ZP_06750855.1| integrase/recombinase [Fusobacterium sp. 3_1_27]
 gi|294487281|gb|EFG34643.1| integrase/recombinase [Fusobacterium sp. 3_1_27]
          Length = 328

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 126/298 (42%), Gaps = 26/298 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTI----RQLSYTEIRAFISKR-RTQKIGDR 86
           S+ T++ Y    + FL F+ +  E   +I  +    + +   ++ A+I      +K+   
Sbjct: 33  SEKTVKDYMFHLKDFLHFV-YDGENDFSISEVIPLMQDIEKEDVEAYIVHLFEDRKLKKT 91

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL--NEKQALTLVDNVLLH 144
           S+   LS +KS  K L+   +  ++ +  ++  K + ++   L  +      ++    + 
Sbjct: 92  SVNTILSALKSLYKELESNGL--KNPVKYIKLFKVNRNIENVLKVSIDDIRKIIGLYKID 149

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR---IQGKGDKIRIVP 201
           +  +      RN  ILY L+  G+R  E L+L  ++ +  +       IQ K  K    P
Sbjct: 150 SEKK-----YRNITILYTLFYTGMRSKELLTLQFKHYLKREDEYFFKLIQTKSGKDVYKP 204

Query: 202 LLPSVRKAILEY----YDLCPFDLNLNIQLPLFRG--IRGKPLNPGVFQRYIRQLRRYLG 255
           +  S+ K + EY      +   DL    +  +F    +   PL+       I+ + + +G
Sbjct: 205 IHKSLVKKLEEYKKYLISMYSLDLKDLDEKYIFSTSVLDNTPLSYRSLNAIIQDMGKLIG 264

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                + H +RH+ AT L  +G D+  I+  LGH     T++Y N  S      + ++
Sbjct: 265 --KDISPHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARSILEKKVLEKL 320


>gi|325686176|gb|EGD28224.1| phage integrase family integrase/recombinase [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 358

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/355 (17%), Positives = 132/355 (37%), Gaps = 42/355 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYT 54
           ME      ++  E + +  ++++  ++E   S  T   Y  + R+F  +L         +
Sbjct: 1   METKKYLSLIDRE-MAQMPDFVKEYQLETRHSLTTSYQYLTEIRRFFSWLIAENLTQAKS 59

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKI------GDRSLKRSLSGIKSFLKY------- 101
             ++    + +LS +++  ++ K    +          ++ RSL+ ++S  KY       
Sbjct: 60  PSQVLPSDLEKLSRSDVMLYLDKLEHSRNKQGHLNSPTTVNRSLNALRSLYKYLTITADK 119

Query: 102 LKKRKITTESNILNMRNLKKSNSL---PRALN--------EKQALTLVDNVLL-----HT 145
                    + +L + +L  +++L     AL         + Q +  +D           
Sbjct: 120 NNGEPYFDRNVMLKINSLPYTSTLNYRAHALEAHMYTGNLKYQFMDFLDQKFAGLCSGRA 179

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
               K    R+ A++ L+ G G+R+SE   +  +++   ++TL I  KG +   VP+   
Sbjct: 180 LSSFKQNKERDMAVIALILGTGIRVSECAGVDMKDLNLKEATLDITRKGGQRDSVPVADW 239

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFR----GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
               + +Y  +             F         + +     ++ + +     G P   T
Sbjct: 240 TLPYLEKYLAIRADRYKAPATNKAFFLTSYHQECRRMTTNAIEKMVGKYSAAFGHP--LT 297

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            H LRH+ A+ L     D   +   LG    S T +YT+V+ +     +     Q
Sbjct: 298 PHKLRHTVASELYQATKDQVMVAQQLGQKGTSATDLYTHVDQREQRAALNASAKQ 352


>gi|320352237|ref|YP_004193576.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320120739|gb|ADW16285.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 354

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/264 (20%), Positives = 109/264 (41%), Gaps = 11/264 (4%)

Query: 51  AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT- 109
           A    E  +   +++++ + + AF   +R + +G  ++++ L+ +               
Sbjct: 96  ANRLREHFSGLKLKEITPSLVAAF-RDKRLKSVGPSTVQKDLALLSHLFTIANAEWALDI 154

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
           ++ +  +R   K +S  R L++ +A  L++      + +           L L+   G+R
Sbjct: 155 KNPVATIRKPAKPDSRLRLLSKDEARHLLETSKQSRNKKL-------YHFLQLMLHTGMR 207

Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
            SEA  +T   I  D   + +     K R VPL     + +LE      ++ N  + LP 
Sbjct: 208 PSEAAGITWGQIDIDARIIDLTVTKTKPRRVPLTVKAVELLLE-LMPDQYEKNSFVFLPN 266

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
                 +      F+R      +   +      H LRH+ A++LL  G DLR++  ILGH
Sbjct: 267 NCSETLRRRPNLFFRRAFWNALKKANIE-DFHMHDLRHTAASYLLMAGVDLRTLADILGH 325

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEI 313
             +   Q YT++   +    + +I
Sbjct: 326 STMQMVQRYTHLLDDHKLKAIDKI 349


>gi|86139483|ref|ZP_01058051.1| integrase/recombinase [Roseobacter sp. MED193]
 gi|85823666|gb|EAQ43873.1| integrase/recombinase [Roseobacter sp. MED193]
          Length = 274

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/261 (21%), Positives = 101/261 (38%), Gaps = 30/261 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ  + ++ I RG+ +   +S+    + F  FL          +     +  ++RA+   
Sbjct: 10  RQRMIDDMRI-RGMGEKAQKSHIRAIKDFAAFLG---------RPPDTATPEDLRAYQLH 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +   +    +  ++ F      R+         M+   +   LP   + ++   +
Sbjct: 60  MTDSGVTPSTFNVRIVALRFFFSMTCGREEMK----RYMQFRTEPRKLPVVFSVEEVSDI 115

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDK 196
           +                +  A L + YG GLR SE  +L   +I  D+  + ++ GKG K
Sbjct: 116 LMA--------APGPGLKYRAALSISYGAGLRASEVCNLKISDIDSDRMLIHVELGKGQK 167

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLG 255
            R V L P + + +  ++           +  LF G  +  P++P    R     +   G
Sbjct: 168 DRKVMLSPGLLELLRAWWREA------RPEGWLFPGKPKINPISPRQLSRAFTSAKHMAG 221

Query: 256 LPLSTTAHTLRHSFATHLLSN 276
           +    T HTLRHSFATHLL  
Sbjct: 222 VKKPATLHTLRHSFATHLLEQ 242


>gi|323138766|ref|ZP_08073831.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322396013|gb|EFX98549.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 409

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 64/286 (22%), Positives = 110/286 (38%), Gaps = 21/286 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            ++     ++GL++ TL +Y      F+  L          +         IR ++   R
Sbjct: 125 EYMVWAREQQGLAETTLATYASAIIPFVAALG---------EDPAAYDAAAIRGYMLG-R 174

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLPRALNEKQALTL 137
              +    L      I++FL++L             M    +    S+PR L E     +
Sbjct: 175 AGAVSVARLNGIGVAIRAFLRFLIAMGRCPPGRDRAMPQAAEWRLASIPRFLPEDDIARI 234

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +                R+ AI+ LL   G+R SE   L   +I   Q ++R+ GKG + 
Sbjct: 235 IAACESERR-------LRDRAIILLLVRLGMRASEVARLGFDDIDWRQGSIRLHGKGRRE 287

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
            ++PL   V  A++ Y +           L L      +P++ G  +  +R+     G+ 
Sbjct: 288 ELLPLSQEVGDALIAYIECARPAFAARA-LFLTESAPLRPIDRGTIKCVVRRALERAGVE 346

Query: 258 LSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                AH LRHS AT +L +G  L  +  +L H   + T  Y  V+
Sbjct: 347 SRFKGAHVLRHSAATSMLRHGVSLAGVSIVLRHRSPAMTVHYAKVD 392


>gi|134291527|ref|YP_001115296.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134134716|gb|ABO59041.1| phage integrase family protein [Burkholderia vietnamiensis G4]
          Length = 319

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 66/323 (20%), Positives = 124/323 (38%), Gaps = 26/323 (8%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLE-IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
            N+ P +V+    +    +L+      R     T ++Y      FL +       ++ I 
Sbjct: 9   ANSTPALVTAAGERAGVRFLEFFASAIRN--PHTRRAYARAAGDFLTWCG-----EMGIP 61

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           +I  +    + A+I + +TQ +   ++K+ L+ I+    +L   +I + +   ++R    
Sbjct: 62  SIAAVQPLHVAAWI-ELQTQALSAPTVKQQLAAIRHLFDWLVTGQIVSVNPAASVRGPSH 120

Query: 122 SNSL---PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
                  P  L+  +A  L+D++ + T      I  R+ A++ L+     RI  AL++  
Sbjct: 121 PARTGATP-VLDRTEARQLLDSIDVSTP-----IGLRDRALIALMVFSFARIGAALAMRL 174

Query: 179 QNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI---- 233
            ++   Q  L ++  +              +A L  Y           + PLFR I    
Sbjct: 175 DDVYVQQRRLWVRLREKGGKAHAMPCHHTLEAALHAYLEHLSGTGAEPKGPLFRTIARGT 234

Query: 234 ---RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
                 PL        +R+     G+  +   HT R +  T  L NGG L S  ++  H 
Sbjct: 235 RQLSCTPLPQANAYAMVRRRAAAAGIATAIGNHTFRATGITAYLQNGGTLESAAAMANHA 294

Query: 291 RLSTTQIYTNVNSKNGGDWMMEI 313
              TTQ+Y   +     D +  I
Sbjct: 295 STRTTQLYDRRHDALSLDEIERI 317


>gi|134288322|ref|YP_001110485.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134132972|gb|ABO59682.1| phage integrase family protein [Burkholderia vietnamiensis G4]
          Length = 576

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 71/318 (22%), Positives = 118/318 (37%), Gaps = 41/318 (12%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           E+ R LS LT +    D   +  FL   T     I  +R  S  + R F        +  
Sbjct: 267 ELGRALSSLTTE----DAIAYRTFLRHPTPRDRWIGPVRPRSSPDWRPF-----NGNLSA 317

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           RS+  +LS I +  ++L +++    +    +   K   S P AL+   A T  +  L+  
Sbjct: 318 RSVAHALSIIGALFRWLVEQRYVLANPFAGI---KVRGSNPTALDASHAFTDGEWALVRA 374

Query: 146 -SHETKWIDARN-------SAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKG 194
            +   +W +            +L   Y  GLR SE +  T   +  D      LR+ GKG
Sbjct: 375 IADGLEWSNGWAIPAAQRLRFLLDFGYATGLRASELVGATLGGVETDARGDHWLRVNGKG 434

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            K+  V L P   +A+  Y       +   +   + P+   +           R    +R
Sbjct: 435 KKLARVALPPLAWEALARYLAERGLPVVPVHWQPKTPIIGSLDTDRGTAISSVRLWMIMR 494

Query: 252 R---------------YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           R                       + H +RH+ ATH L +G +L +++  L H  +STT 
Sbjct: 495 RFFLLSADSIEADHAPLADKLRRASPHWMRHTHATHALGSGAELTAVRDNLRHASVSTTS 554

Query: 297 IYTNVNSKNGGDWMMEIY 314
           IY + +       M   +
Sbjct: 555 IYLHSDEVKRARQMANAF 572


>gi|237744578|ref|ZP_04575059.1| integrase/recombinase [Fusobacterium sp. 7_1]
 gi|229431807|gb|EEO42019.1| integrase/recombinase [Fusobacterium sp. 7_1]
          Length = 328

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 62/298 (20%), Positives = 127/298 (42%), Gaps = 26/298 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTI----RQLSYTEIRAFISKR-RTQKIGDR 86
           S+ T++ Y    + FL F+ +  E   +I  +    + +   ++ A+I      +K+   
Sbjct: 33  SEKTVKDYMFHLKDFLHFV-YDGENNFSISEVIPLMQDIEKEDVEAYIVHLFEDRKLKKT 91

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL--NEKQALTLVDNVLLH 144
           S+   LS +KS  K L+   +  ++ +  ++  K + ++   L  +      ++    + 
Sbjct: 92  SVNTILSALKSLYKELESNGL--KNPVKYIKLFKVNRNIENILKVSIDDIRKIIGLYKID 149

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR---IQGKGDKIRIVP 201
           +  +      RN  ILY L+  G+R  E L+L  ++ +  ++      I+ K  K    P
Sbjct: 150 SEKK-----YRNITILYTLFYTGMRSKELLTLKFKHYLKRENEYFFKLIETKSGKDVYKP 204

Query: 202 LLPSVRKAILEY----YDLCPFDLNLNIQLPLFRG--IRGKPLNPGVFQRYIRQLRRYLG 255
           +  S+ K + EY      +   DL    +  +F    +   PL+       I+ + + +G
Sbjct: 205 IHKSLVKKLEEYKEYLMSMYSLDLKDLEEKYIFSTSVLDNSPLSYRSLNAIIQDMGKLIG 264

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                + H +RH+ AT L  +G D+  I+  LGH     T++Y N  S      + ++
Sbjct: 265 --KDISPHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARSILEKKVLEKL 320


>gi|91202076|emb|CAJ75136.1| similar to site-specific tyrosine recombinase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 351

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 53/271 (19%), Positives = 102/271 (37%), Gaps = 27/271 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S    +SY    +  L F            ++  ++  ++  +   R+       ++ + 
Sbjct: 74  SLNMQKSYTTSAKHLLSFFGDL--------SLLAITPKKVNDYKVSRKNLGKKPATINKE 125

Query: 92  LSGI-KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           L+ + K+F   +K+ +   ++    +   K++N   R L++ +   L++N     S    
Sbjct: 126 LAMLSKAFCLAVKEWEWIRDNPASKISKEKEANERDRWLSDDEEKRLLENSPEWLSD--- 182

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKA 209
                   I+      GLR  E LSLT   +   +  + IQ  K  K R +PL       
Sbjct: 183 --------IIVFDLHTGLRQDELLSLTWDRVDLFRKVIIIQESKNGKPRTIPLNQISLDI 234

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           ++E   +     +      +F       +N     R     +    +  +   H +RH F
Sbjct: 235 LMEKTKVRSLKGD-----FVFPSSVMTKMNRRNLVRAFDIAKEKASIQ-NFHFHDVRHCF 288

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           AT L   G D+  I  +LGH  ++ TQ Y +
Sbjct: 289 ATRLAQRGVDIYRISKLLGHLNITMTQRYAH 319


>gi|313123709|ref|YP_004033968.1| site-specific recombinase xerd [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280272|gb|ADQ60991.1| Site-specific recombinase XerD [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 358

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 62/355 (17%), Positives = 132/355 (37%), Gaps = 42/355 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYT 54
           ME      ++  E + +  ++++  ++E   S  T   Y  + R+F  +L         +
Sbjct: 1   METKKYLSLIDRE-MAQMPDFVKEYQLETRHSLTTSYQYLTEIRRFFSWLIAENLTQAKS 59

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKI------GDRSLKRSLSGIKSFLKY------- 101
             ++    + +LS +++  ++ K    +          ++ RSL+ ++S  KY       
Sbjct: 60  PSQVLPSDLEKLSRSDVMLYLDKLEHSRNKQGHLNSPTTVNRSLNALRSLYKYLTITADK 119

Query: 102 LKKRKITTESNILNMRNLKKSNSL---PRALN--------EKQALTLVDNVLL-----HT 145
                    + +L + +L  +++L     AL         + Q +  +D           
Sbjct: 120 NNGEPYFDRNVMLKINSLPYTSTLNYRAHALEAHMYTGNLKYQFMDFLDQKFAGLCSGRA 179

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
               K    R+ A++ L+ G G+R+SE   +  +++   ++TL I  KG +   VP+   
Sbjct: 180 LSSFKQNKERDMAVIALILGTGIRVSECAGVDMKDLNLKEATLDITRKGGQRDSVPVADW 239

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFR----GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
               + +Y  +             F         + +     ++ + +     G P   T
Sbjct: 240 TLPYLEKYLAIRADRYKAPATNKAFFLTSYHQECRRMTTNAIEKMVGKYSAAFGHP--LT 297

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            H LRH+ A+ L     D   +   LG    S T +YT+V+ +     +     Q
Sbjct: 298 PHKLRHTVASELYQATKDQVMVAQQLGQKGTSATDLYTHVDQREQRAALNASAKQ 352


>gi|150400371|ref|YP_001324138.1| phage integrase family protein [Methanococcus vannielii SB]
 gi|150013074|gb|ABR55526.1| phage integrase family protein [Methanococcus vannielii SB]
          Length = 322

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 67/318 (21%), Positives = 134/318 (42%), Gaps = 37/318 (11%)

Query: 17  ERQNWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           E + WL   + ER   G+   T+     D  +  +FL F  E     ++  +L+  +   
Sbjct: 22  ELKKWLNKFKEEREFDGIKTSTI---GNDITRLKVFLNFVLERL--EKSPNELTNADFVK 76

Query: 74  FISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           F +   R +K+   +  R    +K F + ++           N ++ K+ +   +  +  
Sbjct: 77  FFNFLERERKLSRNTQNRYYQLLKVFYRLMRLE---------NFKDFKEESQERKRFSGF 127

Query: 133 QAL-------TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           +          L+++++            R++ I+  L+  G RISEAL+LT  +   ++
Sbjct: 128 EIKHYDAVSSELLNDIINIVVESKSRTKIRDATIIRFLWDSGCRISEALNLTYGDSDLEE 187

Query: 186 STLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG--- 241
            T  ++  KG+  R V         I  Y     +++    +  LF+   G+P+  G   
Sbjct: 188 GTFVLRNTKGNAERTVVCSRDTLDVINYY---VQYNVKKGSKDKLFQNSDGEPIGRGWIG 244

Query: 242 -VFQRYIRQLRRYLGLP--LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            +F++ + +L++   +P       H+LRH  A  LL  G  +  ++  LGH  L TT  Y
Sbjct: 245 EIFRKAVDRLKKEGRIPANKKVVVHSLRHGRAVDLLEKGQPIDIVKEYLGHKSLDTTLFY 304

Query: 299 TNVNSKNGGDWMMEIYDQ 316
           ++  SK   + M++   +
Sbjct: 305 SH--SKERKEKMIKNIQK 320


>gi|257469860|ref|ZP_05633952.1| integrase/recombinase [Fusobacterium ulcerans ATCC 49185]
 gi|317064089|ref|ZP_07928574.1| DNA integration/recombination/inversion protein [Fusobacterium
           ulcerans ATCC 49185]
 gi|313689765|gb|EFS26600.1| DNA integration/recombination/inversion protein [Fusobacterium
           ulcerans ATCC 49185]
          Length = 333

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 61/303 (20%), Positives = 128/303 (42%), Gaps = 26/303 (8%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI----RQLSYTEIRAFISKR-RTQ 81
            E   S+ TL+ Y    + FL F+ +  EE I  + +    + +   ++  +I+     +
Sbjct: 28  FEIYRSQKTLKDYMFYLKDFLNFV-YEGEEGIRAEELIELMKDVEKQDVEDYIAYLVEDR 86

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL--NEKQALTLVD 139
           K+   S+ + +S +KS  K ++K     E+    +   K S ++   L  + +    ++ 
Sbjct: 87  KLKKTSINKIISSLKSLYKEMEKNGY--ENPFKYVELFKVSRNIDNVLKLSFEDIKKIIG 144

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDK 196
              ++        D RN  ILY L+  G+R  E ++L  ++I++ +    I+    K  +
Sbjct: 145 QYQINGEK-----DYRNVNILYTLFYTGMRSQELINLKFKHILEREGNYYIKLEETKSGR 199

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQL----PLFRGI--RGKPLNPGVFQRYIRQL 250
            +   +   + K + EY +      N++        +F     +   L+       ++ +
Sbjct: 200 EQYKSVHDILIKKLKEYKEYLQSLYNIDDSDIEDHYVFSSSTEKNTQLSYRALYDLVQNM 259

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            + +G     + H +RH+ AT L  NG D+  I+  LGH     T++Y N  S      +
Sbjct: 260 GKLIG--KDISPHNVRHAVATELSINGADILEIRDFLGHADTRVTEVYINAKSILEKRVL 317

Query: 311 MEI 313
            ++
Sbjct: 318 EKL 320


>gi|251777699|ref|ZP_04820619.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243082014|gb|EES47904.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 313

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 65/266 (24%), Positives = 103/266 (38%), Gaps = 13/266 (4%)

Query: 38  SYECD-TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           +Y  D    +       T+       +R ++         K   + I + +LK  L   K
Sbjct: 28  NYRKDSITHYYYTYNQITKIIDGKTLLRDINIDVYNTLTIKLIEKGIKNVTLKTYLKTFK 87

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
           + + Y  K           M   K         ++++   L+    + T     + + R+
Sbjct: 88  TIINYCIKNGYVEH---FVMELPKVDQKTIETYSDEELKILLRKPNMKTCI---FTEYRD 141

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYD 215
             I+  L   G+R+S   ++   +I  D ST+ I   K  K  IVPL   +   + EY  
Sbjct: 142 WVIINFLLSTGVRLSSLANIKIGDIDFDTSTINITHTKNRKALIVPLNNQILTILKEYLY 201

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
               D +      LF  I GKPL        IR      G+  +T  H  RH+FA   + 
Sbjct: 202 QRGGDKDE----ILFCTIWGKPLTRNSLGTAIRHYNNSRGVT-TTGIHRFRHTFAKKWVL 256

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNV 301
           NG ++ ++Q ILGH  L  TQ Y NV
Sbjct: 257 NGNNIVALQKILGHSSLDMTQKYINV 282


>gi|291535007|emb|CBL08119.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
          Length = 270

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 56/302 (18%), Positives = 121/302 (40%), Gaps = 37/302 (12%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +K+ + + + L+ +  LSK T Q Y  +  +F+ +L             ++++      +
Sbjct: 1   MKQFEGYEEYLK-QSELSKQTRQVYLREAEKFVRYLNG-----------KEITKDRTMLY 48

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNEK 132
             K R + +   ++   +  +  +L+YL+  +        +++ LK      +   ++ K
Sbjct: 49  REKLREEDLSPATINLYVIAVNRYLRYLECGQ-------ASIKTLKVQKKCSVENIISRK 101

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L++        +          I+  L   G+R+SE   +T +    +   +++  
Sbjct: 102 EYQELLNYAKRSGREK-------YYYIMRTLALTGIRVSELQYITVE--TLETGRVQVYN 152

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG  IR V L   + + + ++               +FRG  G P+N     + I  L  
Sbjct: 153 KGK-IRDVYLPDVLIRELKKFCRE-----EKENDGIIFRGRGGDPINRITVYKMIAYLGD 206

Query: 253 YLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            +G+       H+ RH FA   +   G+L  +  +LGH  + TT+IYT    +     + 
Sbjct: 207 MVGIKKEKVHPHSFRHFFAISYMERYGNLAELADLLGHTSIETTRIYTTSTVEEKRRKLN 266

Query: 312 EI 313
            +
Sbjct: 267 NL 268


>gi|222834321|gb|EEE72798.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 75/191 (39%), Gaps = 21/191 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L   R L+  TL SY  D       L            +  L    IR+F ++  
Sbjct: 478 RYLDWLATSRKLAAHTLTSYGHDL----SVLQSQAIRLAPGVALLALETRHIRSFAARLH 533

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNILNMRNLKKSNSLPRALNEKQALTLV 138
              +  R++ R+LS  + F  +  +       + +  +R  K+   LP+AL+ + A+ LV
Sbjct: 534 GNGLSARTIARTLSAWRGFYLWAARHGHGVQSNPVDGVRAPKRGRPLPKALSVEHAVALV 593

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-----------MDDQST 187
            +       +      R+ A+  L Y  GLR+SE + L  +               D + 
Sbjct: 594 AHR-----QDDTNESLRDQAVFELFYSSGLRLSELIQLDVRYTEDGDYRSSGWLDLDGAE 648

Query: 188 LRIQGKGDKIR 198
           + + GKG + R
Sbjct: 649 VTVLGKGSRRR 659


>gi|67920313|ref|ZP_00513833.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera
           watsonii WH 8501]
 gi|67857797|gb|EAM53036.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera
           watsonii WH 8501]
          Length = 322

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 56/273 (20%), Positives = 115/273 (42%), Gaps = 17/273 (6%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T++ Y  +T   L+       + +    +R      +R  +     QK+   +  + 
Sbjct: 41  SRRTIR-YSLNTIASLLTNGDCDADTLDWSKLRYHHTAAVRVALL----QKLAPVTANKM 95

Query: 92  LSGIKSFLKYLKKRKITTESN---ILNMRNLKKSNSLP-RALNEKQALTLVDNVLLHTSH 147
           LS ++  L    +  +    +    ++  N++    L  R+L+  +   L+      T  
Sbjct: 96  LSALRRVLLEAYRLGLMAADDYQKAVDFPNIQAEPELRGRSLDSTEIRALL-----GTCG 150

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
           E   +D R++AI+ +L G G+R SE + L  ++  +    + ++ GK  K R V L    
Sbjct: 151 EESVMDIRDAAIMVMLRGTGIRRSELVKLELRDFDEQTGEVLVRKGKRGKTRRVYLPFDA 210

Query: 207 RKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              I  +  +    ++ L  ++     ++   +N     R I++  +  G+  S + H  
Sbjct: 211 ISFIQRWLGVRGEEEVCLFCRIHRGGHLKLGQMNSDTVWRIIQKRAKMAGIE-SFSPHDF 269

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           R +F + LL  G D+ ++Q + GH    TT  Y
Sbjct: 270 RRTFCSDLLDAGVDIVTVQKLAGHSSPVTTAKY 302


>gi|38637711|ref|NP_942685.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527049|gb|AAP85799.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 410

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 74/283 (26%), Positives = 113/283 (39%), Gaps = 17/283 (6%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
            L  ERGL+  T++ Y      FL       +       +  LS  EI  F+    TQ  
Sbjct: 125 YLHQERGLAATTIRKYRWCAHLFLT-----KQFGDGATRLSDLSAREIIDFVQHEATQSP 179

Query: 84  GDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS--NSLPRALNEKQALTLVDN 140
           G   S+ +    ++SFL+Y + R +        +  +      S+P+A++ + A      
Sbjct: 180 GRAQSIAK---VLRSFLQYARYRGLIKLDLAAAIPRVAHWSMASIPKAISPEYARR---- 232

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             L +    + +  R+ AIL LL   GLR  E +SLT  +I  +  TL I GKG +   +
Sbjct: 233 -ALASCDRRRPVGRRDYAILLLLARLGLRSGEVVSLTLDDIDWETGTLNIHGKGGQESPL 291

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LS 259
           PLL  V +AI +Y      D                          +R      G+  L 
Sbjct: 292 PLLAPVGEAIADYLKNGRADSESRSVFLRINAPIRGFKTEKAVCNVVRYALERAGIDSLR 351

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              H  RH+ AT +L  G  L  I  +L H    +T+IY  V+
Sbjct: 352 KGTHQFRHALATQMLRQGSSLAEISEVLRHKSPDSTRIYAKVD 394


>gi|332829974|gb|EGK02602.1| hypothetical protein HMPREF9455_00852 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 409

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 62/292 (21%), Positives = 115/292 (39%), Gaps = 25/292 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSLKR 90
           +  TL +Y+   R          + K       QL+   IR +       Q    ++++ 
Sbjct: 130 APTTLSTYKYTHRSLAK--FIKKKFKTKDVAFGQLNEQFIREYQDSVLGEQGYAMQTVRH 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L+ +K   K   K  I+ + +    +  K+  + P+AL+ +    + D  +      T+
Sbjct: 188 YLAILKKICKIAFKEGISEKLHFAYYKLPKQKEATPKALSRESFEKVRDLEIPARCPSTR 247

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGDKIR-IVPLLPSV 206
           +       +       G   ++ + +T  N+  D+     L+   K    R  V LLP  
Sbjct: 248 FT----RDLFLFACYTGTAYADVIRITKDNLFTDEGGELWLKYARKKTDYRARVKLLPEA 303

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              I +Y            +  +F        +P + +  ++ LR   G+    T H+ R
Sbjct: 304 IALIEKY--------KDENRDTIFPWQ-----SPEMVKANMKGLRVLAGVKEPMTYHSGR 350

Query: 267 HSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           HSFA+ + L  G  + +I  +LGH  +STTQIY  V  K   + M ++ + T
Sbjct: 351 HSFASLITLEEGVPIETISRMLGHSNISTTQIYARVTPKKLFEDMDKLIEAT 402


>gi|253573171|ref|ZP_04850542.1| LOW QUALITY PROTEIN: phage integrase [Bacteroides sp. 1_1_6]
 gi|251837240|gb|EES65361.1| LOW QUALITY PROTEIN: phage integrase [Bacteroides sp. 1_1_6]
          Length = 237

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 57/235 (24%), Positives = 101/235 (42%), Gaps = 12/235 (5%)

Query: 21  WL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +L + L  +R +SK T+ SY     QF+ ++       +    ++ L+   +  ++    
Sbjct: 8   FLSEYLPHQRNVSKNTIASYRDSFVQFINYMKDINGIPVERLLLKHLTRDNVINYLQWLH 67

Query: 80  -TQKIGDRSLKRSLSGIKSF---LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            T+K    +    L+ I+SF   L+Y+    +    +IL+++  K   S P  L+ +   
Sbjct: 68  NTKKNTSATCNYRLAAIRSFCSYLQYIVIDNMVEWQSILSIKAKKTEISPPNYLSMEGIK 127

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ--STLRIQGK 193
            L     L     T W   R+ A+L L+Y  G R+ E   LT   +  D    T+R+ GK
Sbjct: 128 LL-----LAQPDTTSWKGRRHLALLSLMYDTGARVQEIADLTVDCVRIDTTPYTIRLTGK 182

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           G K RIVPL  +    +  Y +    +    ++ PLF   R + L        ++
Sbjct: 183 GRKTRIVPLAEAQVDILRSYMEENNLNDPNMMKKPLFFNGRHEKLTREGITYILK 237


>gi|26989560|ref|NP_744985.1| phage integrase family site specific recombinase [Pseudomonas
           putida KT2440]
 gi|24984438|gb|AAN68449.1|AE016478_1 site-specific recombinase, phage integrase family [Pseudomonas
           putida KT2440]
          Length = 292

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 110/279 (39%), Gaps = 16/279 (5%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            L+  + Q+     +     L F     + +    +L    + A ++  R       S  
Sbjct: 3   RLAPSSQQTMRYILQDAADRLGFVDCNIVDV-PWHRLEPGHVIALVAALRADGFAPNSSS 61

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLP--RALNEKQALTLVDNVLLHT 145
             ++ I+  +    ++ +     +L +R +K    + LP  R L       L+D      
Sbjct: 62  LYVNAIRGVMNEAWRQGLIDHEQLLRIREVKPATGSRLPPGRNLRRSLIRELMDVC---- 117

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           + + +    R++AI+ LLYG G+R SE++ +    +  +  +L++ GKG+   +    P 
Sbjct: 118 AADPRPQGVRDAAIIALLYGTGMRKSESVDIDLDQVDFEARSLQVVGKGNHQLVKYAPPW 177

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNP-GVFQRYIRQLRRY--LGLPLS 259
             + +  + +L   DL    +   F   R  RG  +    + +  I  + R     + + 
Sbjct: 178 AFEKLQAWLELRRQDLPAGAEDDPFLFNRIRRGNHITRARITKHAIYYIARQRGAQVGVK 237

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              H  R +F T ++    DL   Q +  H  + TT IY
Sbjct: 238 IMPHDFRRAFITRVIEE-HDLSIAQKLAHHANIQTTAIY 275


>gi|295106975|emb|CBL04518.1| Site-specific recombinase XerD [Gordonibacter pamelaeae 7-10-1-b]
          Length = 395

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 58/315 (18%), Positives = 102/315 (32%), Gaps = 46/315 (14%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK------I 83
           G S  T+ +Y    R ++  L       +    I         +     R         +
Sbjct: 82  GYSPTTVDAYASHLRCYVDPL-------VGGVRIDDAQPYMFASLYKALREDGGKDGNPL 134

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
              ++++  + +      L +  +   + I  +   ++       L+E    TL      
Sbjct: 135 AANTVRQVHAHLSGSFGRLAETHVIGFNPIAGVTPPRQERVEAVPLSEPDFSTL------ 188

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------------ 191
                       +  I  L    G R  E      ++    +S + ++            
Sbjct: 189 --QSRADAGGGIDEEIAALDLATGFRRGEVSGFQERDWSFRRSDMSVERVVVQSASAGSP 246

Query: 192 ------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-----IQLPLFRGIRGKPLNP 240
                      IR V L       + ++Y+    DL  +        PLF    G P  P
Sbjct: 247 WVYKSPKSKAGIRRVSLDAETNDRLADWYERSRADLRADGFRRTASTPLFAREDGSPYLP 306

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYT 299
            +       + R +GL  +   HTLRH+ AT+LL  G  +R +Q  LGH  ++ T QIY 
Sbjct: 307 SMVYAGFSAMAREVGLDPAAHFHTLRHTHATYLLDQGVSIRVLQERLGHSSVNVTLQIYG 366

Query: 300 NVNSKNGGDWMMEIY 314
           +V      +   E Y
Sbjct: 367 HVLPGR-DEAAAEAY 380


>gi|229170556|ref|ZP_04298204.1| Phage integrase [Bacillus cereus AH621]
 gi|228612905|gb|EEK70082.1| Phage integrase [Bacillus cereus AH621]
          Length = 336

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 121/293 (41%), Gaps = 29/293 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +  S  T + Y  D   FL ++         + TI++LS+ E+  +  +  ++K    +L
Sbjct: 48  KKRSDRTKKIYLHDLSHFLRYIKEK------VGTIQELSHNEMEIYFYEL-SKKYAATTL 100

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQALTLVDNVLLHTS 146
           +R  + ++ FL+Y+      T+     ++ +  KK   + R L  ++   ++D       
Sbjct: 101 RRKKTVVQQFLRYVYDNNGLTDDYSTRIKKVSVKKEALVNRDLFPEEVNEILD------- 153

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----DQSTLRIQGKGDKIRIVPL 202
              K  +    A+ +LL   GLRI E  +    +++     +   LR+ GKG+K R V +
Sbjct: 154 -TLKKTNHFMYALFFLLTTTGLRIEEVANAKWADLVFHSSLNTYLLRVVGKGNKAREVRI 212

Query: 203 LPSVRKAILEYYDLCPF--DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-- 258
              V + I     L      L+++          G         +Y+ +      LP   
Sbjct: 213 FEDVLEDICRLRQLRRQTSKLDVSSTSAFLPKADGSHYRADYLSKYVAEKIEETNLPFLR 272

Query: 259 ----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                 T HT RH FA +L+  G +L+ I+  LGH  + TT+ Y    ++   
Sbjct: 273 HRRDRITPHTCRHFFANYLMGKGVELKKIRDYLGHESIMTTERYLRERTRRQN 325


>gi|297627411|ref|YP_003689174.1| Phage integrase:Phage integrase, N-terminal SAM-like
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296923176|emb|CBL57769.1| Phage integrase:Phage integrase, N-terminal SAM-like
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 313

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 75/302 (24%), Positives = 129/302 (42%), Gaps = 16/302 (5%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ++L E + W   L  ER   + T  +Y      F+ +L    EE     ++R+L+   + 
Sbjct: 14  DVLDEFERW---LLQERSAQECTAAAYTARVAAFVEWLPAPVEE-----SLRKLTAAMLI 65

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNLKKSNSLPRALN 130
            ++     + +   +L + L  ++SFL+Y  +     +    ++      + +S+P  + 
Sbjct: 66  EWVDLEAARGLKASTLGKQLVMLRSFLQYAHRSGRMGQDLSGVVPHAAAWRLSSIPDPVP 125

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
                 L D + L +         R+ AIL LL G GLR  E   L   +I     +LRI
Sbjct: 126 AGTIEALFDTLDLRSPK-----GLRDRAILLLLTGLGLRACEIAGLRLDDIGWRTGSLRI 180

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +GKGD++  +PL   V  A+ +Y            ++        +PL+       IRQ+
Sbjct: 181 RGKGDRVDELPLPDEVGHALEDYVLHGRGGRVQGEEVFWTVIDPVQPLSANGVCGTIRQI 240

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+      H LRH+FAT +L+ G  L+ +Q +L H  L TT +Y  V+        
Sbjct: 241 CIKAGVEK-FGPHRLRHTFATGMLATGATLQEVQGLLRHAHLRTTALYAKVDKNRLTALA 299

Query: 311 ME 312
            E
Sbjct: 300 RE 301


>gi|115334655|ref|YP_764501.1| DNA integration/recombination protein [Geobacillus phage GBSV1]
 gi|155042957|ref|YP_001425624.1| DNA integration/recombination /inversion [Bacillus virus 1]
 gi|297528601|ref|YP_003669876.1| integrase [Geobacillus sp. C56-T3]
 gi|84688605|gb|ABC61301.1| DNA integration/recombination protein [Geobacillus phage GBSV1]
 gi|115529861|gb|ABJ09640.1| DNA integration/recombination /inversion [Bacillus virus 1]
 gi|297251853|gb|ADI25299.1| integrase family protein [Geobacillus sp. C56-T3]
          Length = 394

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/295 (14%), Positives = 109/295 (36%), Gaps = 34/295 (11%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T+++ + +    + +             ++ ++    +  +   + +   D +L    + 
Sbjct: 87  TIRARKHELGHLMRYFGNLK--------LKDVTRKMYQDMLLDLKKKGYADNTLDGIHTT 138

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
            +   K   + ++   +     +  K+  ++    +  + +  ++   L    +T     
Sbjct: 139 GRMIFKKAMELELINSNPTEYAKVPKQKKTVEDIESGNKDMKFLEKHELALFLKTAQEHG 198

Query: 155 --RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----GDKIRIVPLLPSVRK 208
              +  +   L   G+R+ E L+L  ++I   + T+ I        +  R   LLP   +
Sbjct: 199 LAMDYVVFSTLAYTGMRLGELLALQWKDINFKEHTIAITKTLYSPRNNERYYQLLPPKTQ 258

Query: 209 -------------AILEYYDLCPFDLNL------NIQLPLFRGIRGKPLNPGVFQRYIRQ 249
                        ++L+ +     ++ L      +    +F    G P  P   +  +++
Sbjct: 259 GSIRTIKVDPNIISLLKKHKAEQNEIKLRMGELYHDLGFVFARPSGFPEVPKKIEIRMKR 318

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNS 303
           L R   +    T H+LRH+  + L+  G  ++ IQ  LGH  + TT  IY ++  
Sbjct: 319 LLRIANIHKHVTPHSLRHTHTSLLIEAGVGIKEIQQRLGHADIETTMNIYAHLTK 373


>gi|258539633|ref|YP_003174132.1| site-specific tyrosine recombinase XerS [Lactobacillus rhamnosus Lc
           705]
 gi|257151309|emb|CAR90281.1| Tyrosine recombinase xerC [Lactobacillus rhamnosus Lc 705]
          Length = 370

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 68/372 (18%), Positives = 148/372 (39%), Gaps = 48/372 (12%)

Query: 1   MEGNNLPEIVSFELLKERQNWL-QNLEIERGL--SKLTLQSYECDTRQFLIFL------A 51
           M   N P+++   +L    +++      ++ +  +  TL  Y    ++FL +L       
Sbjct: 1   MSTQNYPKLIQA-MLPSLPDYIQDYYHSQKAIPIADSTLYQYLHFYQEFLHWLISSRVTD 59

Query: 52  FYTEEKITIQTIRQLSYTEIRAFISKRRTQ--------KIGDRSLKRSLSGIKSFLKYLK 103
             + + + ++T+ +LS  + +AF++    +        ++  RS+   L GIK+  ++L 
Sbjct: 60  AISPQNVPLETLERLSLRDAQAFVAYLLERPSKTHPNKRMTRRSVALRLVGIKALYRFLT 119

Query: 104 KR-------------------KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           +                    K+ T +     RN K    L     + + L  +D     
Sbjct: 120 EESEPNADGEPYFYRNVWNKVKLKTHAETTTYRNHKLQEMLFVDGEDARFLQWLDQQYAQ 179

Query: 145 TSHETKWID-----ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                          RN AI+ LL+G G+R+SE +++  +++  D+ T+++  KG+    
Sbjct: 180 QLPSKPRAYFEATKERNLAIIALLFGSGVRVSELVNMNLEDLNMDRHTVQVVRKGNFQDR 239

Query: 200 VPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFR---GIRGKPLNPGVFQRYIRQLRRYLG 255
           V     +   +  Y       +       PLF    G     +     + + ++     G
Sbjct: 240 VNFADWIDPYLTAYLKSRTAMIGQQKPTSPLFVTQIGQMVNRIRQNTIEAFFKRYTTAYG 299

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
               +T H  RH+  T++ +   D++ +   LG    S T +Y N++ K+G   + E+ +
Sbjct: 300 --RPSTPHKARHTLGTNIYTVTKDVQQVADQLGQTTTSATDLYINLSDKSGKAALREVSE 357

Query: 316 QTHPSITQKDKK 327
               ++ Q  ++
Sbjct: 358 TAAKALDQHPQQ 369


>gi|42526683|ref|NP_971781.1| phage integrase family site specific recombinase [Treponema
           denticola ATCC 35405]
 gi|41816876|gb|AAS11662.1| site-specific recombinase, phage integrase family [Treponema
           denticola ATCC 35405]
          Length = 354

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 94/249 (37%), Gaps = 14/249 (5%)

Query: 64  RQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
             L+ T    F     R  ++   + +     +++  K   +  +  +   + ++++   
Sbjct: 107 DALTPTWFENFQQTLQRETELSPYTCENYACSLRTLFKKAVRDGVLVKDPTIGVKHIHCP 166

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            S+   L  +    L              + A            GLRIS+  SL    + 
Sbjct: 167 ESIKEFLMPEDIRKL------AAEPIGGILGADVKKAFLFACCTGLRISDLKSLKWGGVS 220

Query: 183 DDQSTL-RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
            ++ TL +IQ K  +   +P+       +   + L   + N   +  +F           
Sbjct: 221 FEKKTLTKIQQKTKRAVYLPIKDEAIAFL---HLLAEENPNRTDEDFIFP---HVATTGT 274

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              +Y+ +  +  G+      H  RH+ AT LL +G DL ++Q +LGH ++STT  YT V
Sbjct: 275 NMNQYLIEWGKRAGVRQKIGWHLARHTHATLLLESGADLYTVQKLLGHTKISTTAQYTQV 334

Query: 302 NSKNGGDWM 310
             +   + +
Sbjct: 335 TDRKKKEAI 343


>gi|167033938|ref|YP_001669169.1| integrase family protein [Pseudomonas putida GB-1]
 gi|166860426|gb|ABY98833.1| integrase family protein [Pseudomonas putida GB-1]
          Length = 304

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 58/287 (20%), Positives = 111/287 (38%), Gaps = 19/287 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           LQ +     L+  + Q+     +     L F     + +    +L    + A ++  R  
Sbjct: 10  LQYMA---RLAPSSQQTMRYILQDAADRLGFVDCNIVDV-PWHRLEPGHVIALVAALRAD 65

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLP--RALNEKQALTL 137
                S    ++ I+  +    ++ +     +L +R +K      LP  R L       L
Sbjct: 66  GYAPNSSSLYVNAIRGVMNEAWRQGLIDHELLLRIREVKPATGTRLPPGRNLRRSLIREL 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D      + + +    R++AI+ LLYG G+R SE++ +    +     +L++ GKG+  
Sbjct: 126 MDVC----AADPRPQGVRDAAIIALLYGTGMRKSESVDIDLDQVDFQARSLQVVGKGNHQ 181

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNP-GVFQRYIRQLRRY 253
            +    P   + +  + DL   DL    +   F   R  RG  +    + +  I  + R 
Sbjct: 182 LVKYAPPWAFEKLQAWLDLRRQDLPAGAEDDPFLFNRIRRGSHITRARITKHAIYYIARQ 241

Query: 254 --LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
               + +    H  R +F T ++    DL   Q +  H  + TT IY
Sbjct: 242 RGAQVGVKIMPHDFRRAFITRVIEE-HDLSIAQKLAHHANIQTTAIY 287


>gi|302669325|ref|YP_003832475.1| phage integrase family protein [Butyrivibrio proteoclasticus B316]
 gi|302396989|gb|ADL35893.1| phage integrase family protein [Butyrivibrio proteoclasticus B316]
          Length = 354

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 61/308 (19%), Positives = 118/308 (38%), Gaps = 30/308 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTE-------EKITIQTIRQLSYTEIRAFISKRRT-Q 81
           G S LT  SY  D R FL +L  +         ++++I   RQ+  ++I  FI      +
Sbjct: 35  GKSILTRISYALDIRYFLDYLIAFAPSFLDKKVKELSIDDFRQIETSDINDFIKWMAESE 94

Query: 82  KIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNS-LPRALNEKQALTLVD 139
            + +R+  R  S I    +Y +   K    + +    +++   +     LN ++   L+ 
Sbjct: 95  HLSERTRARRRSSISGLYEYLINIEKRLEHNPVSGSASIEIPENDRVTYLNLEEQEKLLS 154

Query: 140 NVLLHTSHETKWIDAR------NSAILYLLYGCGLRISEALSLTPQN-------IMDDQS 186
            +   T    + +         + AI++L    GLRISE  +L   +       I D++S
Sbjct: 155 CIKSGTGLTGRQLKYHEKYKKRDLAIIFLFLDTGLRISELQALNVSDVVIYEDLIDDNKS 214

Query: 187 TLRI------QGKGDKIRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLN 239
              +      +        +      +  I +Y D    +  + +   PLF    GK L+
Sbjct: 215 ECYVLAVRKDRKNSLSTTKIYFSDESKAYIQDYLDSRKGNGEDTSDNSPLFTTTTGKRLS 274

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               Q+ +++           +   LR SFA     +  ++  +Q  LGH  ++ T +Y 
Sbjct: 275 IREIQQMLKKYVAVSLNRNDISIGKLRSSFAMEFYKHEKNILILQQRLGHKSITATNMYA 334

Query: 300 NVNSKNGG 307
             + +   
Sbjct: 335 RASDREEA 342


>gi|317967959|ref|ZP_07969349.1| integrase/recombinase [Synechococcus sp. CB0205]
          Length = 319

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 59/307 (19%), Positives = 110/307 (35%), Gaps = 39/307 (12%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L      R  S+ T   Y  + R ++ +   +         +R++  +    +I++
Sbjct: 30  LKRFLAQCS--RSGSQETRDGYAREIRHYVSWRDRHHPH----LHLREIDPSLTENWIAE 83

Query: 78  R----RTQKIGDRSLKRSLSGIKSFLKYL----------KKRKITTESNILNMRNLKKSN 123
                   ++  RS  R +S + +  ++             R        + +   K + 
Sbjct: 84  LLHAVEVGELKPRSFNRRVSAVSAMYRWASEPSRSAVTGVPRNPIP--PRVQLHAPKLAK 141

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-- 181
            LP     +  L+ V   +     E     AR+  ++   Y  G R+SE   L   +I  
Sbjct: 142 PLP-----EADLSAVLGRISQAKAEGSKTAARDFVLVRGSYLLGCRVSELARLKWGDIEA 196

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNP 240
           +D    + + GKG K R V +     +       L            +F   R   PL+ 
Sbjct: 197 VDGGGQVTLLGKGSKQRTVRISVETLE-------LFESLGRRESGDWVFPSNRKDGPLSR 249

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                 +R+  R     +    H LRH+ ATH +  G D+ ++Q+ LGH   +TT  Y  
Sbjct: 250 QAIAERMRRWGREA--EVHLHPHKLRHTHATHAIRRGVDVFTLQATLGHSSSATTSGYVA 307

Query: 301 VNSKNGG 307
            N  +  
Sbjct: 308 ANPADSS 314


>gi|15673214|ref|NP_267388.1| site-specific tyrosine recombinase XerS [Lactococcus lactis subsp.
           lactis Il1403]
 gi|281491737|ref|YP_003353717.1| site-specific tyrosine recombinase XerC [Lactococcus lactis subsp.
           lactis KF147]
 gi|34223004|sp|Q9CG78|XERS_LACLA RecName: Full=Tyrosine recombinase xerS
 gi|12724203|gb|AAK05330.1|AE006355_5 integrase-recombinase [Lactococcus lactis subsp. lactis Il1403]
 gi|281375451|gb|ADA64961.1| Site-specific tyrosine recombinase XerC [Lactococcus lactis subsp.
           lactis KF147]
 gi|326406772|gb|ADZ63843.1| site-specific tyrosine recombinase XerC [Lactococcus lactis subsp.
           lactis CV56]
          Length = 356

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 54/323 (16%), Positives = 119/323 (36%), Gaps = 45/323 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKI------TIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  +  +F  +L       +      ++  +  L+  ++ +FI   R +   
Sbjct: 33  YSLNTLYEYLKEYERFFSWLVDSGVADVDKITDVSLSVLENLTKRDLESFILYLRERPRL 92

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTE-------SNILNMRNLKKSNSLP- 126
                   +   ++ R+LS + S  KYL +     +       + +  ++  KKS +L  
Sbjct: 93  NTRSTRYGVSQTTINRTLSALSSLYKYLTEEVENEDGEPYFYRNVMKKVQTKKKSETLAS 152

Query: 127 -------RALNEKQALTLVDNVLLHTSHETKWID--------ARNSAILYLLYGCGLRIS 171
                  +     +    +D +                     R+ AI+ L+   G+R+S
Sbjct: 153 RAENIKGKLFLGDETQGFLDYIDNEYEKTLSNRARSSFFKNKERDLAIIALILASGIRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLF 230
           EA+++  +++      + +  KG K   VP  P  +     Y ++         +    F
Sbjct: 213 EAVNVDLRDLNLITMVVEVTRKGGKRDAVPYAPFAKTYFERYLEVRSQRYKTTAKDTAFF 272

Query: 231 RGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
             +       ++P   ++ + +  +     +  T H LRH+ AT L +       + + L
Sbjct: 273 VTLYRDVPSRIDPSSVEKLVAKYSQA--FKVRVTPHKLRHTLATRLYAQTNSQVLVSNQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH     T +YT++ ++   + +
Sbjct: 331 GHASTQVTDLYTHIINEEQKNAL 353


>gi|262046435|ref|ZP_06019397.1| site-specific tyrosine recombinase XerS [Lactobacillus crispatus
           MV-3A-US]
 gi|260573306|gb|EEX29864.1| site-specific tyrosine recombinase XerS [Lactobacillus crispatus
           MV-3A-US]
          Length = 388

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 66/355 (18%), Positives = 131/355 (36%), Gaps = 42/355 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT------ 54
           ME     E++  E+ K   ++++   +    S  T   Y  + R+F  +L          
Sbjct: 1   METAKYLELIQIEVNK-LPDFVKQFNLGTNHSLTTTYQYLTEIRRFFDWLRQENISSASD 59

Query: 55  EEKITIQTIRQLSYTEIRAFISKR------RTQKIGDRSLKRSLSGIKSFLKY------- 101
              +T  T+  L   +I  +I         + +     ++ RS++ ++S  K+       
Sbjct: 60  NAHVTTDTLANLRRNDIMLYIDYLGHTRNKQGRLNSPTTINRSINALRSLFKFLTITADN 119

Query: 102 LKKRKITTESNILNMRNLKKSNSL---PRALN--------EKQALTLVDNVLLHTSHETK 150
                    + +L + +L  + +L      L         + + LT +D   ++  ++  
Sbjct: 120 NHGEPYFERNVMLKINSLNDTQTLNYRAHVLESHMYTGKLKFEFLTFIDQDYINHCNKQA 179

Query: 151 WID-----ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
            I       R+ AI  L+ G G+R+SE   +   ++    + L +  KG +   VP+   
Sbjct: 180 KIGFKQNKERDMAIAALILGTGIRVSECAGVDLSDLNLKDAVLDVTRKGGQKDSVPIAEW 239

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLSTT 261
               I  Y  +     + + +   F   +       +     ++ I +     G P   T
Sbjct: 240 TLPYIKRYKGIRNERYHADSKQVAFFLTQWHGQTRRITTNAIEKMINKYSAAFGHP--LT 297

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            H LRH+ A+ L     D   +   LG    S T +YT+V+ K     + EI  +
Sbjct: 298 PHKLRHTVASELYEVTKDQVLVAQQLGQKGTSATDLYTHVDQKKQRAALNEISKK 352


>gi|311233617|gb|ADP86471.1| integrase family protein [Desulfovibrio vulgaris RCH1]
          Length = 395

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 63/262 (24%), Positives = 106/262 (40%), Gaps = 21/262 (8%)

Query: 49  FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT 108
           + A +    +    +  L+   I    S   T      +++  L+ I       +  +I 
Sbjct: 132 YYAKWIRPVLGDSALSDLTPPLIEQVASNAMTAGRSAATIRHLLAIISQIWGMARNHEIV 191

Query: 109 T-ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
             E     ++  +K N   R L E +A TL+         E +  D  +SA+L L   CG
Sbjct: 192 NGECPCTRIKKPRKDNRRMRFLTEAEASTLL------VELEKRSKDTHDSALLSLF--CG 243

Query: 168 LRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           LR  E  SLT  ++     T+ I+  K    R   +   VR  ++E          LN  
Sbjct: 244 LRAGEIHSLTWTDLNFTSGTIYIRDPKNKHSRHAYMTDEVRSMLIE------RSKQLNAT 297

Query: 227 LPLFRGIRGKPLN--PGVFQRYIRQLRRYLGLPL---STTAHTLRHSFATHLLSNGGDLR 281
             +F    G   N     F+R + QL    G+         HTLRH+FA+ L+ +G  L 
Sbjct: 298 EYVFPAQNGAKRNWVSDTFERVVDQLGLNDGITDSRQRVVFHTLRHTFASWLVQDGTPLY 357

Query: 282 SIQSILGHFRLSTTQIYTNVNS 303
           ++  ++GH  L  T+ Y++++ 
Sbjct: 358 TVAELMGHTTLEMTKRYSHLSP 379


>gi|328913318|gb|AEB64914.1| Tyrosine recombinase xerC [Bacillus amyloliquefaciens LL3]
          Length = 385

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 55/281 (19%), Positives = 113/281 (40%), Gaps = 29/281 (10%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKK 121
           ++ +S TE + +I++ R     + +++R  S + + L       +I  E+ +  ++  K+
Sbjct: 105 LKDVSRTEYQKWINELR-FNYSEGTVRRIHSLMNTALNDAVHEFRILRENPVTRIKIPKE 163

Query: 122 SN--SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           +      +     Q    ++ V     +       +   +  L+   GLRI EAL+LT  
Sbjct: 164 TKNNKEIKFFTVDQLEKFLNQVKEPQKNSKYKHSIQYYVLFSLMARTGLRIGEALALTWN 223

Query: 180 NIMDDQSTLRIQGK----------------GDKIRIVPLLPSVRKAILEYYDLC------ 217
           +I  ++ T+++                      +RI+ L     + + ++          
Sbjct: 224 DIDFEECTIKVNKTLVYPTNSTPYLSTPKSKAGLRIIKLDIHTVQLLKKHRINRKEVVLK 283

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
             +        +F    G+ L   V + Y +++ +   LP+  + H LRHS A HL+   
Sbjct: 284 YKNYKKPEDDIVFYQHDGRWLRTNVVREYFKEICKRAELPI-LSPHALRHSHAVHLIEAK 342

Query: 278 GDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQT 317
            DL+ +   LGH  +  T   Y +V  K   D + E+Y + 
Sbjct: 343 ADLKFVSERLGHSSIKITADTYLHVTKKIENDAL-EMYLRY 382


>gi|240169979|ref|ZP_04748638.1| integrase family protein [Mycobacterium kansasii ATCC 12478]
          Length = 359

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 68/349 (19%), Positives = 122/349 (34%), Gaps = 53/349 (15%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           PE   FE +     W ++ +  R L +  + S E   R+F+ F   +             
Sbjct: 18  PEPALFEAM--LDGW-RSQQRARRLGESIIGSRERTVRRFVEFTGGWPW---------SW 65

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-----------------ITT 109
           +  ++ ++I+   T      +++     +  FL+Y+   +                 I  
Sbjct: 66  TAGQLESWIA---TGGWAHSTVRSYQGAVAVFLEYVCDNRYGWVVECEQRVGARPAQICH 122

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVL-----LHTSHETKWIDAR-NSAILYLL 163
           E N        +     R L   +     D          TS    W+ A  ++A+  + 
Sbjct: 123 EWNTARHVCEYEGRPARRPLTRAELQAFFDAADDWAEQAVTSGRKGWLAAFRDAALFKVC 182

Query: 164 YGCGLRISEALSLTPQNI--------MDDQSTLRIQ----GKGDKIRIVPL---LPSVRK 208
           YG GLR  E   L   +         +      +++     +G   R   +   +P   +
Sbjct: 183 YGFGLRRREVAMLDVADFTANPAAPQLGGLGVCQVRFGKAMRGSPPRRRSVAAVMPWALE 242

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           A+ +Y  L            L+   RG  ++P        + R   GLP   + H LRHS
Sbjct: 243 ALEQYLTLVRPRYAAAAHPALWLTERGGRISPRQVDDRFARWRAAAGLPTELSVHCLRHS 302

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           + +HL+ +G D   +Q  +GH   STT +YT V +      +    D  
Sbjct: 303 YVSHLIEDGVDPLFVQQQVGHSWASTTAVYTQVGADAKNRMLRAALDAA 351


>gi|228969855|ref|ZP_04130590.1| Integrase [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228789860|gb|EEM37707.1| Integrase [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 375

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 71/351 (20%), Positives = 128/351 (36%), Gaps = 47/351 (13%)

Query: 10  VSFELLKERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL-----------AFYTEE 56
              E  KE+  W  ++ +E +  LS  TL  Y  +   FL +L                 
Sbjct: 18  ARVERHKEKMPWYIIEYIEEKTNLSPATLYGYLIEYEMFLQWLISSRLATTDGEVVTKIH 77

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY-------LKKRKITT 109
           ++ I+T+  L   +++ F S    Q    +++ R+ S +KS   Y               
Sbjct: 78  EVPIETLEHLPLKQVKRFKSYLERQGNKTKAVIRTFSALKSLFNYLTSNTEDDNGECYFY 137

Query: 110 ESNILNMRNLKKSN--------------------SLPRALNEKQALTLVDNVLLHTSHET 149
            + +  M   K+                         R L+  +   ++           
Sbjct: 138 RNVMAKMEIHKEKIDAAARAKEISEVIFHNNDDIKFMRFLS-NEYEQMLQETAPGKLRFF 196

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           K    R+ AIL L+ G GLR+SEA SLT  +I      +++  KGDK   +    +    
Sbjct: 197 KRDRERDIAILSLILGTGLRVSEAASLTISSINFRTRYIKVIRKGDKKSSILATQTALDD 256

Query: 210 ILEYYDLCPFDLN-LNIQLPLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           + EY  +        N +  LF          ++    Q+   +  R        + H L
Sbjct: 257 VQEYLKVRANRYKCPNDEDILFVTNYKGSYAQISVNAIQKLTEKYTRA--FDEKKSPHKL 314

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           RH++AT+  +   DL  + + +GH  + TT +YTN++       +  +  +
Sbjct: 315 RHTYATNHYNENKDLVLLANQMGHNSMETTSLYTNIDDTKRRAAIERLEQR 365


>gi|163855610|ref|YP_001629908.1| integrase/recombinase [Bordetella petrii DSM 12804]
 gi|163855757|ref|YP_001630055.1| integrase/recombinase [Bordetella petrii DSM 12804]
 gi|163259338|emb|CAP41638.1| integrase/recombinase [Bordetella petrii]
 gi|163259485|emb|CAP41785.1| integrase/recombinase [Bordetella petrii]
          Length = 379

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 61/305 (20%), Positives = 118/305 (38%), Gaps = 26/305 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +LQ+L  + G++  +L+++     +   FL  +      I+  R +    I ++I  
Sbjct: 91  FEGFLQHLSAQ-GVAPGSLRTWRSRLFRLEYFLLHH-----GIEEFRLIRIQHINSYIES 144

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQAL 135
                    ++  +L  +K   +Y        E   N + +   ++   LP   +  +  
Sbjct: 145 LA--GFSSNTVGSTLRILKQLFQYACSNGFHVESFDNAIPIVRRQRRQRLPTVFSVGETE 202

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-RIQGKG 194
            ++          +  +  RN AI  LL   GLRIS+   L   +    ++ +  +Q K 
Sbjct: 203 KIL-----SAIDRSNALGKRNYAIFLLLARMGLRISDVRGLMFHHFDWSRNVISIVQQKT 257

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN--PGVFQRYIRQLRR 252
            K   +P++  V  AI++Y      +   + + PL       P +       + + Q  R
Sbjct: 258 KKPVDLPIMDEVGWAIIDYL----RNGRPHSECPLVFIKHIAPFDGLTSALHQQMLQYLR 313

Query: 253 YLGL----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
              +          H+LRHS AT LL     +++I   LGH  + +T  Y  VN      
Sbjct: 314 RADIHVPANKPRGVHSLRHSLATTLLQKQVPIQTISHTLGHLDIGSTSGYVQVNLPQLRL 373

Query: 309 WMMEI 313
             +E+
Sbjct: 374 CALEV 378


>gi|315607168|ref|ZP_07882172.1| integrase [Prevotella buccae ATCC 33574]
 gi|315251222|gb|EFU31207.1| integrase [Prevotella buccae ATCC 33574]
          Length = 448

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 58/292 (19%), Positives = 114/292 (39%), Gaps = 23/292 (7%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           R    F+     + I+I TI +  + E R F+ KR    +   ++  +L  +   +    
Sbjct: 144 RNLREFVENKGVQDISIGTITEDLFEEYRFFLKKR---GLKASTINSNLCWLSRLMFRAV 200

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
            ++I   +   N +  K+   + R L +   + L+   +     E          +    
Sbjct: 201 SKRIIRCNPFENTKYEKEEKKI-RFLQKSDVMKLMAMKMNDKEAELA------RLMFVFS 253

Query: 164 YGCGLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
              GL IS+  +L  ++I    D+Q  +R + +  K+  +  L  + +AI+ +       
Sbjct: 254 CFTGLAISDMENLENKHIQTTADEQMYIRKERQKTKVEFIVPLHPIAEAIISH----CQK 309

Query: 221 LNLNIQLPLFRGIRGKPL------NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                +  L    +G  L      +  V    +  + +  G+    + H  RH+F T  L
Sbjct: 310 EQERSEEYLLVKEKGDHLVFHRDCSRSVMDAKLSIVGKACGICQRLSFHMARHTFGTMSL 369

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
           S G  + SI  ++GH  +S+TQ+Y  V  K   + M  +  +      + DK
Sbjct: 370 SAGIPIESIAKMMGHASISSTQVYAQVTDKKISEDMDRLIAKHQEKNKEDDK 421


>gi|295087392|emb|CBK68915.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 382

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 55/288 (19%), Positives = 110/288 (38%), Gaps = 15/288 (5%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKR 90
           +  T+Q YE   +    F+     +K  +  + ++S   I  +    +T+K     +  +
Sbjct: 106 APATVQRYETSLKHTRDFVWETYHKKDVL--LDEVSRQFIEDYEFWLKTEKKCCHNTATK 163

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L   K  ++    +        L +R        P  L + +   L+   +       +
Sbjct: 164 YLKNFKKIIRIALAKGWMKNDPFLEIR-FSLDKVEPDFLEDSEIQKLISKEI----DIPR 218

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
               R+  I       GL  S+   L  ++I++D + +R   KG +   +     + +  
Sbjct: 219 LSQVRD--IFVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQKTKIMCNIPLMEIP 276

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           L+  +    +        LF  +  + +N      Y+++L    G+  + T H  RH+FA
Sbjct: 277 LKILEKYSTNEYCKKHGVLFPVLCNQKMNA-----YLKELADICGIKKTLTTHVGRHTFA 331

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           T  L+NG  + S+  +LGH  +  T+ Y  V  +     M +I    H
Sbjct: 332 TFALANGVSIESVAKMLGHTNVQMTRHYARVLDRTVIREMSQIKMDFH 379


>gi|237708556|ref|ZP_04539037.1| transposase [Bacteroides sp. 9_1_42FAA]
 gi|229457485|gb|EEO63206.1| transposase [Bacteroides sp. 9_1_42FAA]
          Length = 320

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 55/288 (19%), Positives = 109/288 (37%), Gaps = 15/288 (5%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKR 90
           +  T+Q YE   +    F+     +K  +  + ++S   I  +    +T+K     +  +
Sbjct: 44  APATVQRYETSLKHTRDFVWETYHKKDVL--LDEVSRQFIEDYEFWLKTEKKCCHNTATK 101

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L   K   +    +        L +R        P  L + +   L+   +       +
Sbjct: 102 YLKNFKKITRIALAKGWMKNDPFLEIR-FSLDKVEPDFLEDSEIQKLISKEI----DIPR 156

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
               R+  I       GL  S+   L  ++I++D + +R   KG +   +     + +  
Sbjct: 157 LSQVRD--IFVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQKTKIMCNIPLIEIP 214

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           L+  +    +        LF  +  + +N      Y+++L    G+  + T H  RH+FA
Sbjct: 215 LKILEKYSTNEYCKKHGVLFPVLCNQKMNA-----YLKELADICGIKKTLTTHVGRHTFA 269

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           T  L+NG  + S+  +LGH  +  T+ Y  V  +     M +I    H
Sbjct: 270 TFALANGVSIESVAKMLGHTNVQMTRHYARVLDRTVIREMSQIKMDLH 317


>gi|56130683|ref|YP_145586.1| putative integrase/recombinase [Ralstonia metallidurans CH34]
 gi|94152390|ref|YP_581797.1| tyrosine-based site-specific recombinase BimA [Cupriavidus
           metallidurans CH34]
 gi|56068674|emb|CAI11238.1| putative integrase/recombinase [Cupriavidus metallidurans CH34]
 gi|93358760|gb|ABF12847.1| Tyrosine-based site-specific recombinase BimA [Cupriavidus
           metallidurans CH34]
          Length = 495

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 58/311 (18%), Positives = 115/311 (36%), Gaps = 37/311 (11%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-- 81
            L    G S  TL++Y  + R+ + +   +      +  +  L+  ++ A+    +    
Sbjct: 173 FLRDRTGRSPHTLRAYGAELRRLMRWCGVHE-----VGPLSDLTRQQLLAYRHTLQHGEP 227

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNEK 132
                  ++ + +  R+L+ + S   Y         +    +    ++ +   P  L   
Sbjct: 228 GTENASPQLSEATCTRALAVVASLYGYWYDTGYLQANPAAGLSAGSRARAGFAPTRLIPP 287

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL------TPQNIMDDQS 186
             L   D  L  ++ +      R  AI  L    G R++E +          +  +    
Sbjct: 288 ALLDACDAWLDASAVDASLPALRRRAIWALYRYAGARLAELVWSDEAALPRLEAEVPGHW 347

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           TL + GKG K+R +PL       +  Y      P +   +  LP+  G +G+ L      
Sbjct: 348 TLYVCGKGRKVRAIPLPVPCVAVLRAYRHARGLPPEPPAHEALPVIHGHKGEALQSAGLY 407

Query: 245 RYIRQLRRYL--GLPLS----------TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFR 291
           R ++ +   +  GL              + H LRH++A  L + +   L + Q++LGH  
Sbjct: 408 REVKAIFAAVADGLQARDPAQALLLRAASPHWLRHAYARTLVVDHQVPLPAAQALLGHAS 467

Query: 292 LSTTQIYTNVN 302
           + TT  Y   +
Sbjct: 468 VQTTAAYARTD 478


>gi|237750921|ref|ZP_04581401.1| site-specific recombinase [Helicobacter bilis ATCC 43879]
 gi|229373366|gb|EEO23757.1| site-specific recombinase [Helicobacter bilis ATCC 43879]
          Length = 374

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 63/288 (21%), Positives = 126/288 (43%), Gaps = 21/288 (7%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y      F  +       ++    +R++    ++ F+S   T  +   +++     +
Sbjct: 73  INTYANPLFTFYEYC-----MRLGFSDMREIHVENVQEFLS-IYTANLSLTTIRNYQFAL 126

Query: 96  KSFLKYLKKRKITTESNILNMRNL-----KKSNS--LPRALNEKQALTLVDN---VLLHT 145
            +F  +++++  T E+   ++ N+     K+S S  LP  L E +    ++      +  
Sbjct: 127 TNFFDFIQRQN-TLENGAAHIYNMDIVLSKRSVSHDLPEFLTEAELNAFLNALKSYDIKQ 185

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLL 203
            H    +  RN  I+ ++   G R+SE L +  +++    D   LR++GKG+K+RIV + 
Sbjct: 186 KHINSVVRLRNQLIILMIVYSGARVSEILEIGYKDVSLEGDYYVLRLRGKGNKMRIVFIA 245

Query: 204 PSVRK-AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-STT 261
            ++ +     +  L     ++   +PLF   +            I  L    G+      
Sbjct: 246 KTLIEEYYNNWVALRATFPHVADDMPLFVNKKFHVPAQSYIYVVIENLLLSAGIRKAKNG 305

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           AH LRHSFAT L +   DL  +Q  LGH  + T++IYT+ +++     
Sbjct: 306 AHLLRHSFATMLYNKSKDLILVQESLGHSSVETSRIYTHFDNQRLKHA 353


>gi|26554273|ref|NP_758207.1| integrase [Mycoplasma penetrans HF-2]
 gi|26454282|dbj|BAC44611.1| integrase [Mycoplasma penetrans HF-2]
          Length = 272

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 56/301 (18%), Positives = 118/301 (39%), Gaps = 38/301 (12%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++KE + +L    I++ LSK T+ +Y     Q+++      ++KI    +       I  
Sbjct: 6   MIKEFKTYL----IQQNLSKNTIDAYCTAVNQYIV-----NKDKIDKNNLLLWKANMIET 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F           R++   +  I ++L ++    +        ++++K    L   L  + 
Sbjct: 57  F---------KARTINLKIQAINNYLDFINLGHL-------KLKSVKVQQRL--FL--EN 96

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
            ++  D   L T  + +        I+  L   G R+SE + +  +++      + I  K
Sbjct: 97  VISDADYNFLKTKLKKEKNKEW-YFIVRFLAATGARVSELIKIKVEHVHL--GYIDIYTK 153

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G KIR + +  ++R    E+      +        +F    GK +      + ++     
Sbjct: 154 GGKIRRIYIPRNLRIEATEWLKKLNLE-----SGYIFLNRYGKLITARGISQQLKNYAIK 208

Query: 254 LGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             L  S    H+ RH FA + L    D+  +  ++GH  + TT+IY    +    + + +
Sbjct: 209 YKLNPSVVYPHSFRHRFAKNFLEKYNDISLLADLMGHESIETTRIYLRKTASEQQEIVDK 268

Query: 313 I 313
           I
Sbjct: 269 I 269


>gi|87300841|ref|ZP_01083683.1| integron integrase [Synechococcus sp. WH 5701]
 gi|87284712|gb|EAQ76664.1| integron integrase [Synechococcus sp. WH 5701]
          Length = 278

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 63/293 (21%), Positives = 106/293 (36%), Gaps = 81/293 (27%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKIT 108
           L     ++  ++  R++   E+ AF+S     +++   +  ++L+ +    +        
Sbjct: 10  LIQRYRKERQVRHPREMGSAEVNAFLSHLAVERQVSASTQNQALAALLFLYR-------- 61

Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
                                       L+D  L         +D   + +  LLYG G+
Sbjct: 62  ---------------------------ELLDRDLE--------LDGVEALVAGLLYGSGV 86

Query: 169 RISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAIL---------------- 211
           R+ EAL L   ++   +  L ++ GKG K R   L   +   +                 
Sbjct: 87  RLIEALRLRVHDLDFSRHELMVRDGKGGKDRRTLLPERLGAQLRGHLEEVRQVHRQDLAQ 146

Query: 212 --------------------EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
                               E+     F  +   +           L+P + QR +R+  
Sbjct: 147 GWGRVMLPHALGRKYPNAGVEWGWQWVFPQHQRWRDASSGQQGRHHLDPSLIQRAVRRAV 206

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              GL    T HT RHSFATHLL  G D+R+IQ +LGH  + TT IYT V ++
Sbjct: 207 LAAGLTKPATCHTFRHSFATHLLERGQDIRTIQGLLGHSDVKTTMIYTQVLNR 259


>gi|291286626|ref|YP_003503442.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290883786|gb|ADD67486.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 342

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 62/298 (20%), Positives = 117/298 (39%), Gaps = 40/298 (13%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L++ + ++  +  T  SY      F  F        I  + +  ++  ++  F + R   
Sbjct: 64  LEDYKYKKEKATYTSMSYS--LNAFEGF--------IGEKLLNGVTKKDLSDFTTHRLKA 113

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ----ALTL 137
                S+   +  IK+      + +   ++ +   + LK   +LP+ L        A  L
Sbjct: 114 GYAKTSINIDIRNIKAAFSKAVEWEKLAQNPLNGFKQLKIDKNLPKFLTFDDLDKFANIL 173

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            DN L H                +     G R SEAL LT  +I   +  + I+   +  
Sbjct: 174 GDNPLRHA--------------FFFYVLTGCRRSEALVLTWDDIDFTRMVVHIRKTKNHE 219

Query: 198 -RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLG 255
            R +P+  S+ + +         +     Q  LF G  +G  L+       I+      G
Sbjct: 220 ARDIPICDSLYELL---------NGITPKQGYLFPGKIKGTHLDKDTMTHNIKDCLTEAG 270

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            P     H LRH+FA+ L  +G  L++I+ +LGH  + TT+IY ++ + +    + ++
Sbjct: 271 FP-DMRLHDLRHTFASLLALSGETLQTIRDLLGHSDIRTTEIYAHLTADHLKAAVNKL 327


>gi|303243822|ref|ZP_07330162.1| integrase family protein [Methanothermococcus okinawensis IH1]
 gi|302485758|gb|EFL48682.1| integrase family protein [Methanothermococcus okinawensis IH1]
          Length = 325

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 64/306 (20%), Positives = 132/306 (43%), Gaps = 20/306 (6%)

Query: 18  RQNWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
            + W++    ER   G+   T+     D  +  IFL F    ++  +  + ++   +R F
Sbjct: 26  IKQWVERFREEREFDGIKPSTI---RNDILRITIFLDFVY-NRLNKEPDKLVNSDFVRFF 81

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
               R +K+   +  +    +K F +  + +              K+         +   
Sbjct: 82  NYLERERKLSRNTQDKYFQLLKVFYRLARLQNFRKF--AEESSERKRFRRYEVKHYDAVD 139

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GK 193
             +++ +L          + RNS I+ +L+  G R+SE L++  ++   ++ T RI+  K
Sbjct: 140 GGILNEILQKILSSNSRTNIRNSLIIRMLWDTGCRVSELLNIRYKDCDFEEGTFRIRNTK 199

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQRYIRQ 249
           G + RIV       +A+  Y     ++++ +   P+F+ + GK +N      VF   I++
Sbjct: 200 GKEERIVVCSNDTLEALRYYIQ---YNIDKSPDAPIFQTVDGKQINRNTITHVFSNVIKE 256

Query: 250 LRRYLGLP--LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           L++   +P       H+LRH  A  LL+ G  L  ++ +LGH  + TT  Y++ ++    
Sbjct: 257 LKKEGKIPQNKRIVLHSLRHGRAVDLLNKGVPLDVVKEVLGHKSIDTTLFYSH-SNDRAN 315

Query: 308 DWMMEI 313
             + +I
Sbjct: 316 SMLKDI 321


>gi|251796688|ref|YP_003011419.1| site-specific tyrosine recombinase XerS [Paenibacillus sp. JDR-2]
 gi|247544314|gb|ACT01333.1| integrase family protein [Paenibacillus sp. JDR-2]
          Length = 348

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 66/326 (20%), Positives = 109/326 (33%), Gaps = 45/326 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL---------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           LS  +L  Y  D   F+ +L              + I ++ +   S    R F++     
Sbjct: 17  LSPSSLLEYVRDYETFMGWLIAEGLSSAEKVKDVQLIELERLHMDSIDTFRMFLATNPNH 76

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                ++ R LS ++S   YL +     E   L  RN+    S+ R    K     ++  
Sbjct: 77  SNTRTTITRKLSSLRSLFHYLSQIAEDEEFYPLLKRNVMAKVSIKRTHKPKDTAAKLEGK 136

Query: 142 LLHTSHETKWIDA------------------------RNSAILYLLYGCGLRISEALSLT 177
           LL      +++                          R+S I+ L+   GLR+SE ++L 
Sbjct: 137 LLQEEEIYEFLAYIHADYEKDVAENKQALYSYQLNRTRDSCIISLILHSGLRVSEIVNLN 196

Query: 178 PQNIMDDQSTLRIQGKGDKIRIV----PLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRG 232
             +I   +    +  KG                   +  Y  +          +  LF  
Sbjct: 197 TDDIDVKKKLAYVYRKGKNDDTFKTPVYFRQEAVDDLTAYLQMRDSHYKAPKREKALFLA 256

Query: 233 IRG-----KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           I         +     Q  + +  +  G P   + H LRHSFAT       D+   Q  L
Sbjct: 257 IANGKKEGSRMTKRAIQEMVIKYAKRFGKPY-LSVHKLRHSFATDYYLRN-DIYMTQEQL 314

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH    TTQIY ++  K   + +  I
Sbjct: 315 GHASPETTQIYAHLTDKTMAEAIDRI 340


>gi|298482012|ref|ZP_07000201.1| transposase [Bacteroides sp. D22]
 gi|298271876|gb|EFI13448.1| transposase [Bacteroides sp. D22]
          Length = 407

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 55/288 (19%), Positives = 110/288 (38%), Gaps = 15/288 (5%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKR 90
           +  T+Q YE   +    F+     +K  +  + ++S   I  +    +T+K     +  +
Sbjct: 131 APATVQRYETSLKHTRDFVWETYHKKDVL--LDEVSRQFIEDYEFWLKTEKKCCHNTATK 188

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L   K  ++    +        L +R        P  L + +   L+   +       +
Sbjct: 189 YLKNFKKIIRIALAKGWMKNDPFLEIR-FSLDKVEPDFLEDSEIQKLISKEI----DIPR 243

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
               R+  I       GL  S+   L  ++I++D + +R   KG +   +     + +  
Sbjct: 244 LSQVRD--IFVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQKTKIMCNIPLMEIP 301

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           L+  +    +        LF  +  + +N      Y+++L    G+  + T H  RH+FA
Sbjct: 302 LKILEKYSTNEYCKKHGVLFPVLCNQKMNA-----YLKELADICGIKKTLTTHVGRHTFA 356

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           T  L+NG  + S+  +LGH  +  T+ Y  V  +     M +I    H
Sbjct: 357 TFALANGVSIESVAKMLGHTNVQMTRHYARVLDRTVIREMSQIKMDFH 404


>gi|227892499|ref|ZP_04010304.1| tyrosine recombinase [Lactobacillus ultunensis DSM 16047]
 gi|227865620|gb|EEJ73041.1| tyrosine recombinase [Lactobacillus ultunensis DSM 16047]
          Length = 356

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 66/355 (18%), Positives = 134/355 (37%), Gaps = 42/355 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT------ 54
           ME     E++  EL K   ++++   +    S  T   Y  + R+F  +L          
Sbjct: 1   METTKYLELIRIELDK-MPDYVKQYHLGTNHSLTTTYQYLTEIRRFFDWLRKEGISNASD 59

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKI------GDRSLKRSLSGIKSFLKY------- 101
            + +   T+  L   +I  +I      K          ++ RS++ ++S  K+       
Sbjct: 60  NQHVETDTLASLRRNDIMLYIDYLGHTKNKQGHLNSPTTINRSINALRSLFKFLTITADN 119

Query: 102 LKKRKITTESNILNMRNLKKSNSL---PRALN--------EKQALTLVDNVLLHTSHET- 149
              +     + +L +++L  + +L      L         + + L  +D+   +  ++  
Sbjct: 120 NHGKPYFDRNVMLKIQSLNDTKTLNYRAHVLESHMYTGNLKFEFLKFIDHDYENKCNKQA 179

Query: 150 ----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
               K    R+ AI+ L+ G G+R+SE   +  Q++    + L +  KG +   VP+   
Sbjct: 180 KPGFKRNKERDMAIIALILGTGIRVSECAGVDLQDLNLKDAVLDVTRKGGQKDSVPIAEW 239

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLSTT 261
               I +Y  +       + Q   F   R       +     ++ + +     G P   T
Sbjct: 240 TLDYIQKYKTIRRNRYMADPQQTAFFLTRWHNQTRRITTNAIEKMVNKYSAAFGHP--LT 297

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            H LRH+ A+ L     D   +   LG    + T +YT+V+ K     + +I ++
Sbjct: 298 PHKLRHTLASELYEVTKDQVLVAQQLGQKGTTATDLYTHVDQKKQKAALDKISNE 352


>gi|254438890|ref|ZP_05052384.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198254336|gb|EDY78650.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 420

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 70/316 (22%), Positives = 124/316 (39%), Gaps = 29/316 (9%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P +  F     ++ +   L  +RGLS+ T+        +FL       +    +  +  +
Sbjct: 114 PALDMFPRAVLKREYETYLRSQRGLSQDTIYHCLRFCDRFLT-----AKFGTGLGELNTI 168

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-- 124
              +I  FI + R  +   R  K   S +++  ++L     T  +    +   ++  S  
Sbjct: 169 KPGDITGFILRLREAQNAPRD-KTGPSHLRNLFQFLFWSGKTERNLSNAVPKARQPKSTG 227

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           +PR L  +Q   L++ V      E +    RN A+L L+   GLR  E  ++   +I   
Sbjct: 228 IPRYLEPEQVNRLIEVV-----REHRKTGRRNYAMLMLIARLGLRAPEVTAIELDDIDWR 282

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP---- 240
              + I+GK      +P+   V +AI++Y      +     +  LF  ++  PL      
Sbjct: 283 AGEILIRGKRQLHDRMPMPSEVGEAIVDYIQ----NERRGPERALFVSVKP-PLKRFKDA 337

Query: 241 GVFQRYIRQLRRYLGLPLS---TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
            + +  +R      G+         H LRHS AT +L  G  L  I  +L H    TT I
Sbjct: 338 QILRWILRDAYDATGISPPQAYIGTHILRHSLATDMLRKGASLDEIGDVLRHRSAMTTTI 397

Query: 298 YTNVNSKNGGDWMMEI 313
           Y     ++  D +  I
Sbjct: 398 YA----QHDVDALRTI 409


>gi|195978129|ref|YP_002123373.1| site-specific tyrosine recombinase XerS [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|254799370|sp|B4U2Z3|XERS_STREM RecName: Full=Tyrosine recombinase xerS
 gi|195974834|gb|ACG62360.1| tyrosine recombinase XerC [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 356

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 64/326 (19%), Positives = 120/326 (36%), Gaps = 45/326 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  + ++F  +L             + + T+  LS  ++ AFI   R +   
Sbjct: 33  YSFTTLYEYLKEYKRFFEWLIDSDLSKAARIADVDLTTLEHLSKKDMEAFILYLRERPSL 92

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTE-------SNILNMRNLKKSNSLP- 126
                   +   ++ R+LS + S  KYL +             + +  +   KK  +L  
Sbjct: 93  NTYSTKKGVSQTTINRTLSALSSLYKYLTEEVENEHGEPYFYRNVMKKVATKKKRETLAA 152

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDA---------------RNSAILYLLYGCGLRIS 171
           RA N KQ L L D  +    +  K  +                R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETMAFLDYVDKEYEYKLSNRAKASFRKNKERDLAIIALLLASGIRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           EA++L  +++  +   + +  KG K   V +    +  +  Y  +         Q   F 
Sbjct: 213 EAVNLDLKDVNLNMMLVEVTRKGGKRDSVNVAAFAKPHLEAYLSVRKDRYQAEKQDVAFF 272

Query: 232 GIRG----KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +      +    T H LRH+ AT L         +   L
Sbjct: 273 LTAYRGLPNRIDASSIEKMVGKYSESFKI--RVTPHKLRHTLATRLYDTTKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH     T +YT++ +    + + ++
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNALDKL 356


>gi|260494457|ref|ZP_05814587.1| integrase/recombinase [Fusobacterium sp. 3_1_33]
 gi|260197619|gb|EEW95136.1| integrase/recombinase [Fusobacterium sp. 3_1_33]
          Length = 328

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 62/298 (20%), Positives = 127/298 (42%), Gaps = 26/298 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTI----RQLSYTEIRAFISKR-RTQKIGDR 86
           S+ T++ Y    + FL F+ +  E   +I  +    + +   ++ A+I      +K+   
Sbjct: 33  SEKTVKDYMFHLKDFLHFV-YDGENDFSISEVIPLMQDIEKEDVEAYIVHLFEDRKLKKT 91

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL--NEKQALTLVDNVLLH 144
           S+   LS +KS  K L+   +  ++ +  ++  K + ++   L  +      ++    + 
Sbjct: 92  SVNTILSALKSLYKELETNGL--KNPVKYIKLFKVNRNIENILKVSIDDIRKIIGLYKID 149

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR---IQGKGDKIRIVP 201
           +  +      RN  ILY L+  G+R  E L+L  ++ +  ++      I+ K  K    P
Sbjct: 150 SEKK-----YRNITILYTLFYTGMRSKELLTLQFKHYLKRENEYFFKLIETKSGKDVYKP 204

Query: 202 LLPSVRKAILEY----YDLCPFDLNLNIQLPLFRG--IRGKPLNPGVFQRYIRQLRRYLG 255
           +  S+ K + EY      +   DL    +  +F    +   PL+       I+ + + +G
Sbjct: 205 IHKSLVKKLEEYKEYLMSMYSLDLKDLEEKYIFSTSVLDNSPLSYRSLNAIIQDMGKLIG 264

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                + H +RH+ AT L  +G D+  I+  LGH     T++Y N  S      + ++
Sbjct: 265 --KDISPHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARSILEKKVLEKL 320


>gi|320352402|ref|YP_004193741.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320120904|gb|ADW16450.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 415

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 59/321 (18%), Positives = 124/321 (38%), Gaps = 48/321 (14%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            E + +L +   E+  +K T +SYE   + F  +           + + ++    I A+ 
Sbjct: 96  DEFKKYLASFLAEQN-TKNTRRSYENQVKLFFTWAG---------KDLAEIDIQAILAYR 145

Query: 76  SKRRTQKI-GDRSLKRSLSGIKSFLKYLKKRKITTESNI----LNMRNLKKSNSLPRALN 130
              R +K   D ++      +  F K++++     ++ I    L +   KK       L+
Sbjct: 146 DHLRNEKRHKDSTIWNKFVALNRFFKFVERENRKFKNPIFFKGLKLIFPKKDKGYYSVLS 205

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ----- 185
             ++  L+  V     ++   I  R+ A+L L+   GLR +E   L  +N+  ++     
Sbjct: 206 TAESERLLKQV-----NKRTAIGKRDYALLLLILVYGLRANEVAGLRHKNLERERVKGQQ 260

Query: 186 -STLRIQGKGDKIRIV---PLLPSVRKAILEYYDLCPFD-LNLNIQLPLF---------- 230
            + +  +    + R      L     +A  ++ D      + ++ + P+F          
Sbjct: 261 KAWIVDRKGKFQNRPKTAIILSGRALRAFDDWLDTVGRQGVTVDGETPVFLPFIYDRNNQ 320

Query: 231 -----RGIRGKPLNPGVFQRYIRQLRRYLGLPLS---TTAHTLRHSFATHLLSNGGDLRS 282
                R  + +PL+    +  +++      +       + H LRH+  T L   G  L+ 
Sbjct: 321 ELVIRRDRKHQPLSVKAVENVVKKYLVKAKISREEATLSPHALRHTAFTMLAQEGVKLQD 380

Query: 283 IQSILGHFRLSTTQIYTNVNS 303
           IQ + GH  ++TT IY +   
Sbjct: 381 IQKLAGHQDINTTMIYVHAAQ 401



 Score = 41.5 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 45/145 (31%), Gaps = 17/145 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + + L   +G S+   + Y  + +QF  F             I Q+    +  +      
Sbjct: 2   FAKYLAKYKGGSQ---RVYRSEIQQFFDFKGL---------DINQVDAAALHEYQGHLAV 49

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q     + KR  S + +F K++        + I ++   K            +    + +
Sbjct: 50  QH-SPATTKRKFSILNNFFKFVATAVKGFVNPIESLDTFKTHKGA----ASDEFKKYLAS 104

Query: 141 VLLHTSHETKWIDARNSAILYLLYG 165
            L   + +       N   L+  + 
Sbjct: 105 FLAEQNTKNTRRSYENQVKLFFTWA 129


>gi|41408850|ref|NP_961686.1| hypothetical protein MAP2752 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41397209|gb|AAS05069.1| hypothetical protein MAP_2752 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 381

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 65/285 (22%), Positives = 112/285 (39%), Gaps = 31/285 (10%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RGLS  T+       R+          E++T +    ++   I  F++    + +G RS 
Sbjct: 33  RGLSARTITDSMLTLRRL---------ERVTRRPAHAVAALAISRFLA---DEALGPRSR 80

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
                 +  F ++L        + +  +   +   S+PR +   Q   L+   +   +  
Sbjct: 81  YTYHVQLAGFFRWLANEDG-APNIMAQIPRPRLPRSVPRPITTGQLQALLAVRMHKRT-- 137

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
                     ++ L    GLR  E   +  Q++  D  TL + GKG     +PL P + +
Sbjct: 138 --------RVMILLAAFAGLRAHEIAKVRGQDVDPDARTLHVVGKGGHAATIPLHPVLVE 189

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           A         +           R      L+ GV    I    R  G+P   TAH LRH 
Sbjct: 190 AAETMPRHGWW------FPANSRRPGQHVLSRGVVD-AIGDAMRRAGIP-GGTAHRLRHW 241

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           + T L+++G DLR+ Q++L H  L++T IYT V      + +  +
Sbjct: 242 YGTTLVASGTDLRTAQTLLRHSNLASTAIYTEVYDDRRIEAIDRL 286


>gi|193062841|ref|ZP_03043934.1| integrase [Escherichia coli E22]
 gi|192931484|gb|EDV84085.1| integrase [Escherichia coli E22]
          Length = 337

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 78/315 (24%), Positives = 123/315 (39%), Gaps = 46/315 (14%)

Query: 8   EIVSFELLKER----QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT- 62
           E V+FE   +     + WL     +R LS+LT   +  D +            KI I T 
Sbjct: 34  EAVAFEKHTQYNHHDKEWLAKPTDKRHLSELTKVWW--DLKGKHEEHGKSNLGKIEIFTR 91

Query: 63  ------IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT-TESNILN 115
                   Q++   I  +   RR Q I   S+ R L+ +      L   ++   E     
Sbjct: 92  ITDDPCAFQITKALISQYSMTRRGQGIKPTSINRDLTCLSGMFTALIDAELFFGEHPFRG 151

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           M+ LK+       L +++   L+ N           +D  N  I  L    G R  EA  
Sbjct: 152 MKKLKEQKPETGYLTQEEITLLLAN-----------LDGDNKKIAILCLSTGARWGEAAK 200

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           L  +N++ ++ T  ++ K +K R VP+   V   I               +  LF     
Sbjct: 201 LKAENVIQNRVTF-VKTKTNKPRTVPISEEVAVMI-------------AGKGYLFPDASY 246

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  F+R ++ +     LP     H LRHSFATH + NGG + ++Q ILGH R+  T
Sbjct: 247 PK-----FRRTMKDV--KPDLPDGQATHALRHSFATHFMINGGSIITLQRILGHSRIEQT 299

Query: 296 QIYTNVNSKNGGDWM 310
            +Y +   +   D +
Sbjct: 300 MVYAHFAPEYLQDAV 314


>gi|284991405|ref|YP_003409959.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284064650|gb|ADB75588.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 377

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 55/300 (18%), Positives = 107/300 (35%), Gaps = 32/300 (10%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
           +     +      +   K+    + +L  + + A +  +R   +   S++   + +++ L
Sbjct: 88  QATIDLYATIARSHLVPKLGSLPLDRLRPSNVEALVLAKRRAGLSASSVRTIYAVLRAAL 147

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
               +  +   +    ++           L+ +QA  L++ V             R  A+
Sbjct: 148 DVAVRDGLIQRNPAALVKRPAVERKDAGYLSAQQAEALLEAVR----------GDRLEAL 197

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---------------GKGDKIRIVPLLP 204
             ++   GLR  EAL+L  +++  D + +R++                     R VPL  
Sbjct: 198 YRVMLATGLRRGEALALHWRDVDLDAAVVRVRWTLSRTSAGLELGEPKTEKSRRTVPLPV 257

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
              + +  +      +      L      +F    G PL P    R    L    GL   
Sbjct: 258 PAVETLRAHRKRQAAEQLAAGSLWQASGLVFTSEIGTPLEPRNVLRRFEALAERAGL-RG 316

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTH 318
              HTLRHS A+ LL+ G   + +Q  LGH   + T  IY++V      +   ++    H
Sbjct: 317 VHLHTLRHSAASFLLAAGTHTKVVQEHLGHSSYAITADIYSHVAPAQQREAADKLGQAIH 376


>gi|163782731|ref|ZP_02177727.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881852|gb|EDP75360.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 351

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 50/271 (18%), Positives = 112/271 (41%), Gaps = 31/271 (11%)

Query: 51  AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE 110
           A   EE    + + Q+S   + ++  KR  + +  +++   L+ + S L+  K+  +  +
Sbjct: 93  ARRLEEFFGSRKLSQISTFLVESYKKKRLEEGVKPQTINMELNILGSILRRAKEAGLF-D 151

Query: 111 SNILNMRNLKKSNSLP-RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
             +  +   + ++    R L+E++A  L+                    ++      GLR
Sbjct: 152 GELPKIEKFRNADRERLRFLSEREAQRLISAC-----------PEWFKPVVIFALNTGLR 200

Query: 170 ISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
             E  SL  +++  ++  + ++    K  K+R +P+  +V+K +          L     
Sbjct: 201 AGEIFSLRWEDVDFERGVITVREASSKSGKVRKLPMNATVKKLLQ--------GLERKEH 252

Query: 227 LPLFRGIRGKPLN--PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
             +F    G P       ++R  +      G+      H LRH+FA+ +  N  D+ ++Q
Sbjct: 253 GYIFTNRFGLPYKYEDKTYRRVFKTACEKAGI-KDFRFHDLRHTFASWVAMNSKDIYAVQ 311

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           ++LGH   S T+ Y ++      D++  + +
Sbjct: 312 NLLGHSSPSVTKRYAHLTD----DYLRSVVE 338


>gi|320529667|ref|ZP_08030746.1| phage integrase, SAM-like domain protein [Selenomonas artemidis
           F0399]
 gi|320138028|gb|EFW29931.1| phage integrase, SAM-like domain protein [Selenomonas artemidis
           F0399]
          Length = 352

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 53/282 (18%), Positives = 102/282 (36%), Gaps = 16/282 (5%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T  +YE   R FL +       +  +  +  +   +IR ++ + R       +L    + 
Sbjct: 68  TRDTYELAIRLFLRWCV-----EQGLHPLNDIRDYQIRVYMEEMRRSNYSAATLMIKGAA 122

Query: 95  IKSFLKYLKKRKITTESNILNM--RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           I++F K  ++     E+   ++  RN +  +   + L   Q     +        +    
Sbjct: 123 IRAFYKVAQRLSFIAENPCADLQLRNPQHLDEDYKYLTVDQI---GEICAYLKEDKDALK 179

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
             RN  I+YL+   GLR+ E + L+ ++I   +  + I+GKG    ++       + +  
Sbjct: 180 RLRNLLIVYLMGVEGLRVVEVMRLSDEDIDWQRGRIEIRGKG-HAGLIYPCEETLELLKA 238

Query: 213 YYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRH 267
           Y +        N   P             ++    +  I +     GL       H  RH
Sbjct: 239 YLEERGAVPQENRLTPTIISCSSNNAQGRISRVGIRYVINRALTAAGLKQPGYACHLFRH 298

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           S  T+L     DLR +Q  L       T  Y +V+ +    +
Sbjct: 299 SCGTNLYQETKDLRVVQETLRQRSPKVTAKYAHVHDRMERRY 340


>gi|299136538|ref|ZP_07029721.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
 gi|298601053|gb|EFI57208.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
          Length = 381

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 54/283 (19%), Positives = 107/283 (37%), Gaps = 34/283 (12%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  T+++Y    R+++         +   + + ++  T++ A++      +     L+  
Sbjct: 95  SVATIKTYRGYIRRWIR-------PQWGSRKLDEIKATDVEAWLRSLNLARGSRSKLRSI 147

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           LS +     +  + ++   + I  +R   K    P  L   +   LV+++ L        
Sbjct: 148 LSIL---FNHACRHELFDHNPIRFVRQGAKRLHTPDVLTGSEIKLLVESLPLRE------ 198

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-----------QGKGDKIRIV 200
                  ++ L    GLR  E   L  +++  +   L +                  R V
Sbjct: 199 -----RTLVLLAASTGLRQGEIFGLKWRDVDFEHGELNVIRSMVCGVVGACKTESSQRPV 253

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLS 259
           PL   +  A+L +   C F    +           KP   P + ++YI+   + LG+   
Sbjct: 254 PLHHRLAAALLAWRPNCNFKTQDDWVFASRLHNGRKPYWGPVILRKYIQPAAQKLGIHKQ 313

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
              HT R ++AT L S G + + +Q ++ H  L TT  +YT  
Sbjct: 314 IGWHTFRRTYATLLRSLGVEFKVMQELMRHSSLRTTLDVYTQA 356


>gi|282852244|ref|ZP_06261596.1| site-specific tyrosine recombinase XerS [Lactobacillus gasseri
           224-1]
 gi|282556663|gb|EFB62273.1| site-specific tyrosine recombinase XerS [Lactobacillus gasseri
           224-1]
          Length = 346

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 65/346 (18%), Positives = 130/346 (37%), Gaps = 42/346 (12%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY------T 54
           ME N    ++  EL     ++++   +    S  T   Y  + R+F  +L         +
Sbjct: 1   METNRYLTLIKQEL-ANMPDFVKEYNLGTSHSLTTTYQYLTEIRRFFDWLRQNKISTASS 59

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKI------GDRSLKRSLSGIKSFLKY------- 101
            ++I + T+  +   ++  +I   +  K          ++ RS++ ++S  K+       
Sbjct: 60  NKEIELSTLEGMQRNDVMLYIHYLKHTKNQQGRLNSPTTINRSINALRSLYKFLTITSDN 119

Query: 102 LKKRKITTESNILNMRNLKKSNSL---PRALN--------EKQALTLVDNVLLHTSHET- 149
                    + +L + +L  + +L      L         + Q L  ++N   H  ++  
Sbjct: 120 NHGEPYFDRNVMLKIDSLNDTKTLNYRAHVLESHMYMGDLKYQFLDFIENEYEHKCNKQS 179

Query: 150 ----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
               K    R+ AI+ L+ G G+R+SE + +  +NI      L +  KG +   VP+   
Sbjct: 180 LPSFKKNHERDIAIIALILGTGIRVSECVGVNVRNINLKDEMLDVVRKGGQKDSVPIADW 239

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLSTT 261
               + +Y  +     + N     F   R       +     ++ + +     G     T
Sbjct: 240 TIPYLKKYQKIRTDRYHANKNDIAFFLTRWHGKTRRMTANAVEKMVNKYSAAFG--KPLT 297

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            H LRH+ A+ L     D   +   LG    + T +YT+V+ KN  
Sbjct: 298 PHKLRHTLASELYEVTKDQVLVAQQLGQKGTTATDLYTHVDQKNKR 343


>gi|283798863|ref|ZP_06348016.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
 gi|291073401|gb|EFE10765.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
          Length = 307

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 57/304 (18%), Positives = 119/304 (39%), Gaps = 35/304 (11%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E+    Q + Q L   + ++  T+  Y    RQFL                RQ+ ++ + 
Sbjct: 37  EIDSAIQGFCQYLHT-KNMASNTIHVYSYALRQFLCRY-------------RQVDFSNLH 82

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            +      +    +++   +  + S+L++        +S  L+M  +++ N L   ++E 
Sbjct: 83  LYKVFLL-EHYKPQTVNLRIRALNSYLEFT-----RAKSQKLSMVKIQQRNYLENVISEA 136

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L + +L                I+  +   G R+SE +    ++I +    L    
Sbjct: 137 DYEYLKNCLLRDEK-------YLYYFIIRFMAATGARVSEVIQFQAEDIRNGYKDLY--S 187

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG+K+R + +  ++ +  L + +             +F    GK + P   +  ++ L  
Sbjct: 188 KGNKVRRIYIPKALHQDALRWLEASKIQSGD-----IFLNRFGKRITPAGIRGQLKVLAL 242

Query: 253 YLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             G+       H+ RH FA   +   GD+  +  +LGH  + TT+IY   +S    D + 
Sbjct: 243 NYGINPDVVYPHSFRHRFAKSFIEKCGDISLLSDLLGHRNIETTRIYLRRSSSEQYDIIN 302

Query: 312 EIYD 315
           ++ D
Sbjct: 303 KVVD 306


>gi|255994620|ref|ZP_05427755.1| site-specific recombinase, phage integrase family [Eubacterium
           saphenum ATCC 49989]
 gi|255993333|gb|EEU03422.1| site-specific recombinase, phage integrase family [Eubacterium
           saphenum ATCC 49989]
          Length = 375

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 59/314 (18%), Positives = 118/314 (37%), Gaps = 33/314 (10%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTE-------EKITIQTIRQLSYTEIRAFISKRRTQKI-- 83
            L+   Y  + ++F  +L   T         +I+   I ++   ++  ++   R      
Sbjct: 54  PLSRLRYLEEVKRFFEYLIESTPFTNASDIREISASDIDKIKARDVNEYLDHSRRYSKET 113

Query: 84  ---------GDRSLKRSLSGIKSFLKYLKKRKITTESNILN---MRNLKKSNSLPRALNE 131
                     +++L R  S +    + L + +I  ++       +R  K+S    +AL +
Sbjct: 114 DNGIYIFENSNKTLARKKSALSVLFRQLYRDEIIKKNISEGFNPIRLQKQSEREIKALED 173

Query: 132 KQALTLVDNVLL------HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
            + L ++D V              K    R+ AIL      GLR+ E   L   +    +
Sbjct: 174 NEVLRMLDIVTTGDGLTGAQKRYWKVTKYRDKAILTFFLTYGLRLQELWQLNLSSFNFQR 233

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN---IQLPLFRGIRGKPLNPGV 242
              +I  K +K  I+ L  +  +A+ +Y      D           LF  ++ K +    
Sbjct: 234 EEFKIYRKRNKESIMHLNGTTAEALRDYLINERNDEKAKKYIDDDALFLSLQHKRITKRQ 293

Query: 243 FQRYIRQLRRYL-GLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            +  +++      G       + H LR + AT L+  G  +  +Q +LGH +++TTQ+Y 
Sbjct: 294 IRELVKKYTSLAIGTTQHNGYSPHKLRATTATSLIGRGESIYDVQLLLGHEQVTTTQLYA 353

Query: 300 NVNSKNGGDWMMEI 313
                   D +  +
Sbjct: 354 KHKRDVQRDLIRSL 367


>gi|260662071|ref|ZP_05862967.1| site-specific tyrosine recombinase XerS [Lactobacillus fermentum
           28-3-CHN]
 gi|260553454|gb|EEX26346.1| site-specific tyrosine recombinase XerS [Lactobacillus fermentum
           28-3-CHN]
          Length = 359

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 70/352 (19%), Positives = 126/352 (35%), Gaps = 42/352 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK--- 57
           ME      ++  EL K+  +++   ++    S  T   Y  + R+F  +L      K   
Sbjct: 1   METQRYLNLIDREL-KQLPDFVSEYQLGTRHSLTTSYQYLTELRRFFTWLRKTGLSKATD 59

Query: 58  ---ITIQTIRQLSYTEIRAFISKRRTQKI------GDRSLKRSLSGIKSFLKY------- 101
              +T   + +L   +I  FI      K          ++ RS++ ++S  KY       
Sbjct: 60  NAHVTTAELEKLRRNDIMQFIDDLAHTKNAQQRLNSPTTINRSINALRSLFKYLTVTADI 119

Query: 102 LKKRKITTESNILNMRNLKKSNSL---PRALNEK--------QALTLVDNVLLHTSHETK 150
              +     + +L + +L  + +L      L  K          LT +D           
Sbjct: 120 NGGQPYFERNVMLKIDSLNDTKTLNYRAHVLEAKMYTGQLKYDFLTFLDQEYEQKCDPRA 179

Query: 151 WID-----ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
                    R+ A++ L+ G G+R+SE   +   ++     TL +  KG +   VP+ P 
Sbjct: 180 RTAFEKNKERDIALVALILGTGIRVSETAGIDVNDLDLKGQTLEVTRKGGQRDAVPIAPW 239

Query: 206 VRKAILEYYDLCPFDLNL-NIQLPLFRGIRG---KPLNPGVFQRYIRQLRRYLGLPLSTT 261
               I  Y  +          +   F        K ++    +R + +  R  G P   T
Sbjct: 240 TMPYIQAYATIRRQRYQPEKTERAFFLTHYHGQTKRISVNGIERLVSKYSRAFGHP--LT 297

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            H LRH+ A+ L     D   +   LG    S T +YT+V+       + E+
Sbjct: 298 PHKLRHTLASELYDVTKDQVLVAQQLGQKGTSATDLYTHVDQTKQRQALDEV 349


>gi|104774028|ref|YP_619008.1| site-specific tyrosine recombinase XerS [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|103423109|emb|CAI97845.1| Integrase/recombinase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
          Length = 358

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 64/355 (18%), Positives = 131/355 (36%), Gaps = 42/355 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYT 54
           ME      ++  E + +  ++++  ++E   S  T   Y  + R+F  +L         +
Sbjct: 1   METKKYLSLIDRE-MAQMPDFVKEYQLETRHSLTTSYQYLTEIRRFFSWLIAENLTQAKS 59

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKI------GDRSLKRSLSGIKSFLKY------- 101
             ++    + +LS +++  ++ K    K          ++ RSL+ ++S  KY       
Sbjct: 60  SSQVLPSDLEKLSRSDVMLYLDKLEHSKNKQGHLNSPTTVNRSLNALRSLYKYLTITADK 119

Query: 102 LKKRKITTESNILNMRNLKKSNSL---PRALN--------EKQALTLVDNVLL-----HT 145
                    + +L +  L  +++L     AL         + Q +  +D           
Sbjct: 120 NNGEPYFDRNVMLKINFLPYTSTLNYRAHALEAHMYTGNLKYQFMDFLDQKFAGLCSGRA 179

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
               K    R+ A++ L+ G G+R+SE   +  +++   ++TL I  KG +   VP+   
Sbjct: 180 LSSFKQNKERDMAVIALILGTGIRVSECAGVDMKDLNLKEATLDITRKGGQRDSVPVADW 239

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLSTT 261
               + +Y  +             F   R       +     ++ + +     G P   T
Sbjct: 240 TLPYLEKYLAIRADRYKAPATNKAFFLTRYHQECRRMTTNAIEKMVGKYSAAFGHP--LT 297

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            H LRH+ A+ L     D   +   LG    S T +YT+V+ +     +     Q
Sbjct: 298 PHKLRHTVASELYQATKDQVMVAQQLGQKGTSATDLYTHVDQREQRAALNASAKQ 352


>gi|215481987|ref|YP_002324169.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294]
 gi|213988762|gb|ACJ59061.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294]
          Length = 398

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 49/293 (16%), Positives = 112/293 (38%), Gaps = 25/293 (8%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           +SY+ D  +    L  +    I       ++   +   +++ R++ + + S+ R  + + 
Sbjct: 120 KSYKDDEAK----LRMHILPVIGDYPFEDINAGMLNKLLTELRSKGLTNASINRVRALLS 175

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
                     +   + +  +   K++N + R LN ++   L+D  +L+  H+    +   
Sbjct: 176 VMFNMAINHDLIQVNPVSKVSKFKENNQIERYLNAQEIKRLMD--VLNAPHQHGIDNLII 233

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYD 215
            AI+  L   G+R  EA+ +   ++        + + K  K R + L       +     
Sbjct: 234 VAIVKFLLLTGVRKREAMDMKWTDVDLTTGVWLLGENKSGKARRITLNQDALAILHSLPQ 293

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
              F     +    F  +R          +  + + +   +  +   H LRH+FA+  ++
Sbjct: 294 QHAFIFANPMTGQPFNDMR----------KTFQSIMKAASI-RNIRIHDLRHNFASIAVN 342

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNV-------NSKNGGDWMMEIYDQTHPSI 321
           +G  L  +Q +LGH    TTQ Y ++        S++    +       +P+ 
Sbjct: 343 SGQSLYVVQHLLGHASPQTTQRYAHLQSSTLKQASEDVAAAIRAQSSHHNPTA 395


>gi|149916562|ref|ZP_01905077.1| site-specific recombinase, phage integrase family protein
           [Roseobacter sp. AzwK-3b]
 gi|149809536|gb|EDM69395.1| site-specific recombinase, phage integrase family protein
           [Roseobacter sp. AzwK-3b]
          Length = 363

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 104/277 (37%), Gaps = 8/277 (2%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           Q+Y  ++   +         +   + +  +   ++R    + +       S+ R++  ++
Sbjct: 84  QTYRRNSTNIVQLYRSTYHIRYGHRHLHTICQDDLRKLTKEMQDLGYAPGSVNRTVVILR 143

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
             L+           + L     K  N LP     ++ L+  +   L    + +     N
Sbjct: 144 GMLRRADDWGYCKIHSSLQ----KPPNLLPDHPRHERFLSREEAHRLQAVLQRRGATPVN 199

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD 215
            AIL+LLY  G R SE L+    ++   +   RI   K  + R V L       + +   
Sbjct: 200 LAILFLLY-TGARRSEVLNADWAHVDFARQEWRIPISKNGRPRTVILSDRAVDILEQARA 258

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                     +         + L P        +++R    L      H LRHS+A+ L+
Sbjct: 259 YQQRHFGKQARSVSTVFANPQTLQPYHNIWETWKRVRAEADLT-DVRLHDLRHSYASTLI 317

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           + G  +  +Q +LGH  ++TTQ Y ++ S+   + + 
Sbjct: 318 NAGVSIYEVQKLLGHTNITTTQRYAHLASERLHEAVK 354


>gi|254498096|ref|ZP_05110853.1| Tn554, transposase A [Legionella drancourtii LLAP12]
 gi|254352662|gb|EET11440.1| Tn554, transposase A [Legionella drancourtii LLAP12]
          Length = 358

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 57/343 (16%), Positives = 121/343 (35%), Gaps = 66/343 (19%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K    +++ L      S  T++SY    + F  FL              +++ + + AF+
Sbjct: 26  KPITEFIRYLNNVD-KSPFTVKSYAHHLKLFWEFLVSRQ------LDWTKINLSNLAAFV 78

Query: 76  SKRRTQK--------------IGDRSLKRSLSGIKSFLKYLKK----------------- 104
              R  K                  ++   L  + SF +Y  +                 
Sbjct: 79  GWLRELKDESAVIDIIEDRSARKPATINVILGCLSSFYRYHNQLGNTDVTITESKNLPGN 138

Query: 105 ------RKITTESNI-LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
                   +     +   + ++++   LP+ + ++Q + L +             + R+ 
Sbjct: 139 RYKALLHHVFKNKPVQRRIISVRQVKELPKTITDEQLVQLNEAC----------SNYRDR 188

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE----- 212
            ++ LL+  GLRI + L+L  ++I+   + + I+ + + +  V         +       
Sbjct: 189 FLVALLFETGLRIGQTLALRHEDIICWNNEIHIKYRTNNVNQVRNKSYKSNTLHVSNYVM 248

Query: 213 --YYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
             Y +         +   +F  +    PL     ++    L +  G       H LRH+ 
Sbjct: 249 NLYSEYVSSLDQNRLGDYVFINLNTYEPLCYPAIKKLFVNLSQKCG--FYIRPHMLRHTH 306

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMM 311
           A+ L+  G D+  +Q  LGH  + TT   YT++++K   D   
Sbjct: 307 ASSLVRAGWDMALVQKRLGHTSIQTTVNTYTHIDTKQMKDAFK 349


>gi|29350147|ref|NP_813650.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29342059|gb|AAO79844.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 407

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 55/288 (19%), Positives = 110/288 (38%), Gaps = 15/288 (5%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKR 90
           +  T+Q YE   +    F+     +K  +  + ++S   I  +    +T+K     +  +
Sbjct: 131 APATVQRYETSLKHTRDFVWETYHKKDVL--LDEVSRQFIEDYEFWLKTEKKCCHNTATK 188

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L   K  ++    +        L +R        P  L + +   L+   +       +
Sbjct: 189 YLKNFKKIIRIALAKGWMKNDPFLEIR-FSLDKVEPDFLEDSEIQKLISKEI----DIPR 243

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
               R+  I       GL  S+   L  ++I++D + +R   KG +   +     + +  
Sbjct: 244 LSQVRD--IFVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQKTKIMCNIPLMEIP 301

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           L+  +    +        LF  +  + +N      Y+++L    G+  + T H  RH+FA
Sbjct: 302 LKILEKYSTNEYCKKHGVLFPVLCNQKMNA-----YLKELADICGIKKTLTTHVGRHTFA 356

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           T  L+NG  + S+  +LGH  +  T+ Y  V  +     M +I    H
Sbjct: 357 TFALANGVSIESVAKMLGHTNVQMTRHYARVLDRTVIREMSQIKMDFH 404


>gi|295090532|emb|CBK76639.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 307

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 57/304 (18%), Positives = 119/304 (39%), Gaps = 35/304 (11%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E+    Q + Q L   + ++  T+  Y    RQFL                RQ+ ++ + 
Sbjct: 37  EIDSAIQGFCQYLHT-KNMASNTIHVYSYALRQFLCRY-------------RQVDFSNLH 82

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            +      +    +++   +  + S+L++        +S  L+M  +++ N L   ++E 
Sbjct: 83  LYKVFLL-EHYKPQTVNLRIRALNSYLEFT-----RAKSQKLSMVKIQQRNYLENVISEA 136

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L + +L                I+  +   G R+SE +    ++I +    L    
Sbjct: 137 DYEYLKNCLLRDEK-------YLYYFIIRFMAATGARVSEVIQFQAEDIRNGYKDLY--S 187

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG+K+R + +  ++ +  L + +             +F    GK + P   +  ++ L  
Sbjct: 188 KGNKVRRIYIPKALHQDALRWLEASKIQSGD-----IFLNRFGKRITPAGIRGQLKVLAL 242

Query: 253 YLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             G+       H+ RH FA   +   GD+  +  +LGH  + TT+IY   +S    D + 
Sbjct: 243 NYGINPDVVYPHSFRHRFAKSFIEKCGDISLLSDLLGHRNIETTRIYLRRSSSEQYDIIN 302

Query: 312 EIYD 315
           ++ D
Sbjct: 303 KVVD 306


>gi|13488299|ref|NP_085850.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14028099|dbj|BAB54691.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 416

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 113/298 (37%), Gaps = 14/298 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
            + +E   + Q ++  RGL+  T        R  L+                 ++  +IR
Sbjct: 119 AIAEEMIKFDQYMDNVRGLASRT-----RHQRVLLLTRFLTARFGRGSVVASAITAADIR 173

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALN 130
            F+    T        +     +  +L++        E     +     ++   L   L+
Sbjct: 174 KFVLDVPTGSRSTGLARVKGQALSCYLRFRALAGDPVELLAGTIPRPANRRLAKLAVTLS 233

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           + +   L+      +S  +     R+ A+L  L   GLR  E L LT  +I     TLRI
Sbjct: 234 KSEITDLL-----ASSDGSLPSARRDHAMLRCLADLGLRGCEVLKLTLSDIDWRNGTLRI 288

Query: 191 -QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
            +GK  +  ++PL     +AI EY        +        +    KPL+  V    ++ 
Sbjct: 289 VKGKSRRTDMLPLPFETGRAIAEYLSKERPATSNRALFVRCKAPFDKPLSTVVVHNIVKA 348

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
             R  G    T  H LRHS A+ LL +G  L+ I  +L H  L+T+ +Y  V++    
Sbjct: 349 AYRRCGWS-HTRPHILRHSVASQLLRDGAPLKEISDVLRHRSLNTSMVYLKVDADRLA 405


>gi|298682367|gb|ADI95428.1| phage integrase family site specific recombinase [Pseudomonas
           putida]
          Length = 292

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 54/279 (19%), Positives = 110/279 (39%), Gaps = 16/279 (5%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            L+  + Q+     +     L F     + +    +L    + A ++  R       S  
Sbjct: 3   RLAPSSQQTMRYILQDAADRLGFVDCNIVDV-PWHRLEPGHVIALVAALRADGFAPNSSS 61

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLP--RALNEKQALTLVDNVLLHT 145
             ++ I+  +    ++ +     +L +R +K    + LP  R L       L+D      
Sbjct: 62  LYVNAIRGVMNEAWRQGLIDHEQLLRIREVKPATGSRLPPGRNLRRSLIRELMDVC---- 117

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           + + +    R++AI+ LLYG G+R SE++ +    +  +  +L++ GKG+   +    P 
Sbjct: 118 AADPRPQGVRDAAIIALLYGTGMRKSESVDIDLDQVDFEARSLQVVGKGNHQLVKYAPPW 177

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNP-GVFQRYIRQLRRY--LGLPLS 259
             + +  + +L   +L    +   F   R  RG  +    + +  I  + R     + + 
Sbjct: 178 AFEKLQAWLELRRQELPAGAEDDPFLFNRIRRGNHITRARITKHAIYYIARQRGAQVGVK 237

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              H  R +F T ++    DL   Q +  H  + TT IY
Sbjct: 238 IMPHDFRRAFITRVIEE-HDLSIAQKLAHHANIQTTAIY 275


>gi|325276304|ref|ZP_08142091.1| integrase family protein [Pseudomonas sp. TJI-51]
 gi|324098565|gb|EGB96624.1| integrase family protein [Pseudomonas sp. TJI-51]
          Length = 304

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 58/287 (20%), Positives = 111/287 (38%), Gaps = 19/287 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           LQ +     L+  + Q+     +     L F     + +    +L    + A ++  R  
Sbjct: 10  LQYMA---RLAPSSQQTMRYILQDAADRLGFVDCNIVDV-PWHRLEPGHVIALVAALRAD 65

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLP--RALNEKQALTL 137
                S    ++ I+  +    ++ +     +L +R +K      LP  R L       L
Sbjct: 66  GYAPNSSSLYVNAIRGVMNEAWRQGLIDHEQLLRIREVKPATGTRLPPGRNLRRSLIREL 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D      + + +    R++AI+ LLYG G+R SE++ +    +     +L++ GKG+  
Sbjct: 126 MDVC----AADPRPQGVRDAAIIALLYGTGMRKSESVDIDLAQVDFAARSLQVVGKGNHQ 181

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNP-GVFQRYIRQLRRY 253
            I    P   + +  + DL    L   ++   F   R  RG  +    + +  I  + R 
Sbjct: 182 LIKYAPPWAFEKLQAWLDLRRQALPAGVEDDPFLFNRIRRGNHITRARITKHAIYYIARQ 241

Query: 254 --LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
               + +    H  R +F T ++    DL   Q +  H  + TT IY
Sbjct: 242 RGAQVGVKIMPHDFRRAFITRVIEE-HDLSIAQKLAHHANIQTTAIY 287


>gi|257784371|ref|YP_003179588.1| integrase family protein [Atopobium parvulum DSM 20469]
 gi|257472878|gb|ACV50997.1| integrase family protein [Atopobium parvulum DSM 20469]
          Length = 391

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 61/324 (18%), Positives = 126/324 (38%), Gaps = 41/324 (12%)

Query: 22  LQNLEIER--GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           L+ + I+R  G S  T       TRQ   F+  +   ++  + +R ++ +   +F     
Sbjct: 72  LEYVSIKRRNGASPNT-------TRQHEGFIRNHINGRLGKEDVRSITSSLFTSFEQDLL 124

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ-----A 134
            + +   S+      ++    Y     I   + ++N+    +      A++ ++      
Sbjct: 125 KKGLSRNSVINLHQFLRGAYNYFVSAGICDYNPLINVAKPSREVH--EAVSIEEWGFAGI 182

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLL-YGCGLRISEALSLTPQNIMDDQSTLRIQG- 192
            TL+++ +     E ++      A    L    G+R  E  ++   ++      + + G 
Sbjct: 183 STLINSRITTAIQEDEFNSRVVCAFAAWLSLVTGMRCGEVCAIRYSDVNMLYKHIHVSGT 242

Query: 193 ---------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                          KG + R + +  S    I +Y  L    +           + G  
Sbjct: 243 VIEESYRKPYRRESTKGKRSRNIAITDSDISFISDYMKLQQAHIAFVESSTPLISLDGSY 302

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
           + P    R   ++RR L LP   T H+LRH+ A+  L++G DL+++   LGH   +TT +
Sbjct: 303 MRPTSVSRSFTRMRRTLQLPQGITFHSLRHTHASWCLASGVDLKTLSERLGHADPATTLR 362

Query: 297 IYTNV-------NSKNGGDWMMEI 313
           IY+++        ++  GD +  I
Sbjct: 363 IYSHLLPGRDRGAAEAFGDALRTI 386


>gi|154505593|ref|ZP_02042331.1| hypothetical protein RUMGNA_03132 [Ruminococcus gnavus ATCC 29149]
 gi|166032352|ref|ZP_02235181.1| hypothetical protein DORFOR_02055 [Dorea formicigenerans ATCC
           27755]
 gi|153794032|gb|EDN76452.1| hypothetical protein RUMGNA_03132 [Ruminococcus gnavus ATCC 29149]
 gi|166028075|gb|EDR46832.1| hypothetical protein DORFOR_02055 [Dorea formicigenerans ATCC
           27755]
          Length = 387

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 60/332 (18%), Positives = 122/332 (36%), Gaps = 60/332 (18%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           K T++  E    ++  F   Y +++I  Q +   +   +   +          ++++   
Sbjct: 66  KRTIK--ESTQVRYDDFYRRYIKKQIGKQRVADFNPIILERLLQNMADDDYSTKTIRDVY 123

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           + + +  KY    +I T +    +   K      R L  K+   ++++            
Sbjct: 124 NILNAMFKYAVHNRILTFNPCAGVEVPKTKTKQIRVLTVKEQREVLEH----------AK 173

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--------------------- 191
           +  +  ++ +  G G+R  E L LT  ++   +  + +                      
Sbjct: 174 ERIHENLIQVALGTGMRGGELLGLTWDDVDFRKREISVNKTLVYIKDKETKKYVFKYQTP 233

Query: 192 GKGDKIRIVPLLPSVRKAI-LEYYDLCPFDLNLNIQLPL-------FRGIRGKPLNPGVF 243
              + IR +P+  SV KA+  ++  L    L+ +   PL       F G  GKP+    F
Sbjct: 234 KTKNSIRTIPMQDSVYKALKRQWIQLKEMQLSASEWQPLEGFENLVFVGKNGKPITEHTF 293

Query: 244 QRYIRQLRRYLGLPL---------------STTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           Q  +  + + +                       H LRH+FAT     G D + +Q  LG
Sbjct: 294 QVTLDWIEKSINKERKKQAEKNKTVFIPIPHFYPHALRHTFATRCFEAGIDAKVVQGFLG 353

Query: 289 HFRLSTT-QIYTNVNS---KNGGDWMMEIYDQ 316
           H+ ++ T  +YT+V     K+  D +  +Y +
Sbjct: 354 HYSIAITLDLYTHVTDDKAKSEMDKLQNLYKE 385


>gi|254884944|ref|ZP_05257654.1| transposase [Bacteroides sp. 4_3_47FAA]
 gi|319642539|ref|ZP_07997189.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|254837737|gb|EET18046.1| transposase [Bacteroides sp. 4_3_47FAA]
 gi|317385891|gb|EFV66820.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
          Length = 409

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 122/292 (41%), Gaps = 25/292 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSLKR 90
           +  T+ +Y    R    F+   TE K++     QL+   IR +       +K+   +++ 
Sbjct: 130 APTTMSTYVYTRRTLAEFIK--TEFKVSDLAFGQLNEQFIRDYQDFCLEKKKLAMETVRH 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            LS +K   +   K   + + +  + +  K+  + P+AL+ +    L D  +     E +
Sbjct: 188 YLSILKKICRIAYKEGHSEKYHFCHFKLPKQKETTPKALSRENFEKLRDLEI----PEKR 243

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRI---QGKGDKIRIVPLLPSV 206
                   +       G   ++A+S+T +N   DD+ +L +   + K D +  V LLP  
Sbjct: 244 RSHVITRDLFLFACYTGTAYADAVSITRENLFQDDEGSLWLKYRRKKTDYLGRVKLLPEA 303

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              I +Y D        + ++ LF      P +    +  ++ LR   GL      H  R
Sbjct: 304 LALIGKYRD--------DTRITLFP-----PQDYHTLRANMKSLRLMAGLSQDLVYHMGR 350

Query: 267 HSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           HSFA+ + L  G  + +I  +LGH  + TTQIY  V  K   + M    + T
Sbjct: 351 HSFASLVTLEEGVPIETISKMLGHSNIKTTQIYARVTPKRLFEDMDRFVEAT 402


>gi|256027362|ref|ZP_05441196.1| integrase/recombinase [Fusobacterium sp. D11]
 gi|289765331|ref|ZP_06524709.1| integrase/recombinase [Fusobacterium sp. D11]
 gi|289716886|gb|EFD80898.1| integrase/recombinase [Fusobacterium sp. D11]
          Length = 328

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 62/298 (20%), Positives = 128/298 (42%), Gaps = 26/298 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTI----RQLSYTEIRAFISKR-RTQKIGDR 86
           S+ T++ Y    + FL F+ +  E   +I  +    + +   ++ A+I      +K+   
Sbjct: 33  SEKTVKDYMFHLKDFLHFV-YDGENDFSISEVIPLMQNIEKEDVEAYIVHLFEDRKLKKT 91

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL--NEKQALTLVDNVLLH 144
           S+   LS +KS  K L+   +  ++ +  ++  K + ++   L  +      ++    + 
Sbjct: 92  SVNTILSALKSLYKELESNGL--KNPVKYIKLFKVNRNIENILKVSIDDIRKIIGLYKID 149

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR---IQGKGDKIRIVP 201
           +  +      RN  ILY L+  G+R  E L+L  ++ +  ++      I+ K  K    P
Sbjct: 150 SEKK-----YRNITILYTLFYTGMRSKELLTLQFKHYLKRENEYFFKLIETKSGKDVYKP 204

Query: 202 LLPSVRKAILEY----YDLCPFDLNLNIQLPLFRG--IRGKPLNPGVFQRYIRQLRRYLG 255
           +  S+ K + EY     ++   DL    +  +F    +   PL+       I+ + + +G
Sbjct: 205 IHKSLVKKLEEYKEYLMNMYSLDLKDLDKKYIFSTSVLNNSPLSYRSLNAIIQDMGKLIG 264

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                + H +RH+ AT L  +G D+  I+  LGH     T++Y N  S      + ++
Sbjct: 265 --KDISPHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARSILEKKVLEKL 320


>gi|19704172|ref|NP_603734.1| integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|19714390|gb|AAL95033.1| Integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 328

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 62/298 (20%), Positives = 126/298 (42%), Gaps = 26/298 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTI----RQLSYTEIRAFISKR-RTQKIGDR 86
           S+ T++ Y    + FL F+ +  E   +I  +    + +   ++ A+I      +K+   
Sbjct: 33  SEKTVKDYMFHLKDFLHFV-YDGENDFSISEVIPLMQDIEKEDVEAYIVHLFEDRKLKKT 91

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL--NEKQALTLVDNVLLH 144
           S+   LS +KS  K L+   +  ++ +  ++  K + ++   L  +      ++    + 
Sbjct: 92  SVNTILSALKSLYKELESNGL--KNPVKYIKLFKVNRNIENILKVSIDDIRKIIGLYKID 149

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR---IQGKGDKIRIVP 201
           +  +      RN  ILY L+  G+R  E L+L  ++ +  +       +Q K  K    P
Sbjct: 150 SEKK-----YRNITILYTLFYTGMRSKELLTLQFKHYLKREDEYFFKLVQTKSGKDVYKP 204

Query: 202 LLPSVRKAILEY----YDLCPFDLNLNIQLPLFRG--IRGKPLNPGVFQRYIRQLRRYLG 255
           +  S+ K + EY      +   DL    +  +F    +   PL+       I+ + + +G
Sbjct: 205 IHKSLVKKLEEYKEYLMSMYSLDLKDLDEKYIFSTSILDNSPLSYRSLNAIIQDMGKLIG 264

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                + H +RH+ AT L  +G D+  I+  LGH     T++Y N  S      + ++
Sbjct: 265 --KDISPHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARSILEKKVLEKL 320


>gi|225868545|ref|YP_002744493.1| tyrosine recombinase XerC [Streptococcus equi subsp. zooepidemicus]
 gi|259710442|sp|C0MFD9|XERS_STRS7 RecName: Full=Tyrosine recombinase xerS
 gi|225701821|emb|CAW99258.1| tyrosine recombinase XerC [Streptococcus equi subsp. zooepidemicus]
          Length = 356

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 64/326 (19%), Positives = 120/326 (36%), Gaps = 45/326 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  + ++F  +L             + + T+  LS  ++ AFI   R +   
Sbjct: 33  YSFTTLYEYLKEYKRFFEWLIDSDLSKAARIADVDLTTLEHLSKKDMEAFILYLRERPSL 92

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTE-------SNILNMRNLKKSNSLP- 126
                   +   ++ R+LS + S  KYL +             + +  +   KK  +L  
Sbjct: 93  NTYSTKKGVSQTTINRTLSALSSLYKYLTEEVENEHGEPYFYRNVMKKVATKKKRETLAA 152

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDA---------------RNSAILYLLYGCGLRIS 171
           RA N KQ L L D  +    +  K  +                R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETMAFLDYVDKEYEHKLSNRAKASFRKNKERDLAIIALLLASGIRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           EA++L  +++  +   + +  KG K   V +    +  +  Y  +         Q   F 
Sbjct: 213 EAVNLDLKDVNLNMMLVEVTRKGGKRDSVNVAAFAKPHLEAYLSVRKDRYQAEKQDVAFF 272

Query: 232 GIRG----KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +      +    T H LRH+ AT L         +   L
Sbjct: 273 LTAYRGLPNRIDASSIEKMVGKYSESFKI--RVTPHKLRHTLATRLYDTTKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH     T +YT++ +    + + ++
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNALDKL 356


>gi|304440443|ref|ZP_07400332.1| phage integrase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371195|gb|EFM24812.1| phage integrase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 387

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 59/313 (18%), Positives = 119/313 (38%), Gaps = 29/313 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTR-QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           Q +++N ++E    + T+  Y    + Q   F      + IT + ++  +   +  +IS+
Sbjct: 74  QWYIKNHKLE----ENTISWYNSYLKNQINSFFGDKPIKNITERDVKDFN-NHLMNYISE 128

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEKQALT 136
           R  +    +++K +++ +KS      +  I  ++   N++N+K   S+  +  +  +   
Sbjct: 129 RTKKPYAPKTIKHNITVLKSLFNVAVEEGILEKNPAENVKNVKVQKSVQDKYYSPSEMKK 188

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI------ 190
            +           K  D      + L    GLR +E   L    I      + I      
Sbjct: 189 ALKYAF-------KEDDVNFILCIVLTVTYGLRPAELRGLKWTKIEWTSKRVMIDDTITV 241

Query: 191 --------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
                   +G  +    V +L  + + +L+        L       +     G  L    
Sbjct: 242 VNYYGYDEKGTKNNEPRVGILTPMIEELLKLQIKEQKKLFGKKCEFVVHSTTGDHLANKT 301

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           F+   ++  + +GL      + LRH+ AT L S    + +I  ++GH  LSTT+IY +  
Sbjct: 302 FRDNWKKFCKKIGL-RYLPPYGLRHTTATLLASQNVSIPNIADVMGHKNLSTTEIYIHAI 360

Query: 303 SKNGGDWMMEIYD 315
            +  G     I D
Sbjct: 361 EEEKGIAYNIIND 373


>gi|226349272|ref|YP_002776386.1| putative transposase for insertion sequence element [Rhodococcus
           opacus B4]
 gi|226349379|ref|YP_002776493.1| putative transposase for insertion sequence element [Rhodococcus
           opacus B4]
 gi|226349408|ref|YP_002776522.1| putative transposase for insertion sequence element [Rhodococcus
           opacus B4]
 gi|226349736|ref|YP_002776850.1| putative transposase for insertion sequence element [Rhodococcus
           opacus B4]
 gi|226366657|ref|YP_002784440.1| transposase for insertion sequence element [Rhodococcus opacus B4]
 gi|226245147|dbj|BAH55495.1| putative transposase for insertion sequence element [Rhodococcus
           opacus B4]
 gi|226245187|dbj|BAH55534.1| putative transposase for insertion sequence element [Rhodococcus
           opacus B4]
 gi|226245294|dbj|BAH55641.1| putative transposase for insertion sequence element [Rhodococcus
           opacus B4]
 gi|226245323|dbj|BAH55670.1| putative transposase for insertion sequence element [Rhodococcus
           opacus B4]
 gi|226245651|dbj|BAH55998.1| putative transposase for insertion sequence element [Rhodococcus
           opacus B4]
          Length = 351

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 62/332 (18%), Positives = 120/332 (36%), Gaps = 49/332 (14%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            WLQ +  + G +  T+ +Y     ++L+       + +        +  +I  F+   R
Sbjct: 20  EWLQ-IWTDLGRAPRTIDAYARGLAEYLLVCEREGVDPVVA------TRAQIALFVRDLR 72

Query: 80  TQ---------------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR------- 117
           T+                + + +L++ L  ++ F  +L +  +   + +   R       
Sbjct: 73  TRPSRRGTNVVALDSGSGLANATLQQRLVPVRLFYDFLVEEGVRESNPVGRGRYTPGRHF 132

Query: 118 ----NLKKSN--SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
                        LP    E + L L+D   L           RN  +L L Y   LR  
Sbjct: 133 GGQPRPLVPRMVKLPWIPGEAEWLQLLDVFRLEP--------IRNRLMLALAYDSALRRE 184

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS-VRKAILEYYDLCPFDLNLNIQLPLF 230
           E  SL   ++      LR++ +  K R   ++P      +L    L         + PLF
Sbjct: 185 ELCSLRTDDLDPAHRMLRVRPETTKTRRGRVVPYSAATGVLLSGYLAHRAGISRARGPLF 244

Query: 231 RG----IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
                   G+PL+   + + +R++     +P   + HT RH   T L   G +L +I + 
Sbjct: 245 LSESRRNFGEPLSLWSWSKVVRRVALAADVPQ-FSTHTTRHLCLTDLARMGWELHAIATF 303

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
            GH    +T  Y +++ ++  + +       H
Sbjct: 304 AGHRSTESTLTYIHLSGRDLAEKLNRAMTHLH 335


>gi|308174996|ref|YP_003921701.1| Tyrosine recombinase xerC [Bacillus amyloliquefaciens DSM 7]
 gi|307607860|emb|CBI44231.1| Tyrosine recombinase xerC [Bacillus amyloliquefaciens DSM 7]
          Length = 385

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 55/281 (19%), Positives = 113/281 (40%), Gaps = 29/281 (10%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKK 121
           ++ +S TE + +I++ R     + +++R  S + + L       +I  E+ +  ++  K+
Sbjct: 105 LKDISRTEYQKWINELRLN-YSEGTVRRIHSLMNTALNDAVHEFRILRENPVTRIKIPKE 163

Query: 122 SN--SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           +      +     Q    ++ V     +       +   +  L+   GLRI EAL+LT  
Sbjct: 164 TKNNKEIKFFTVDQLEKFLNQVKEPQKNSKYKHSIQYYVLFSLMARTGLRIGEALALTWN 223

Query: 180 NIMDDQSTLRIQGK----------------GDKIRIVPLLPSVRKAILEYYDLC------ 217
           +I  ++ T+++                      +RI+ L     + + ++          
Sbjct: 224 DIDFEEGTIKVSKTLVYPTNSTPYLSTPKSKAGLRIIKLDIHTIQLLKKHRINRNEVVLK 283

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
             +        +F    G+ L   V + Y +++ +   LP+  + H LRHS A HL+   
Sbjct: 284 YKNYKKPGADIVFYQHDGRWLRTNVVREYFKEICKRAELPI-LSPHALRHSHAVHLIEAK 342

Query: 278 GDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQT 317
            DL+ +   LGH  +  T   Y +V  K   D + E+Y + 
Sbjct: 343 ADLKFVSERLGHSSIKITADTYLHVTKKIENDAL-EMYLRY 382


>gi|303243919|ref|ZP_07330259.1| integrase family protein [Methanothermococcus okinawensis IH1]
 gi|302485855|gb|EFL48779.1| integrase family protein [Methanothermococcus okinawensis IH1]
          Length = 291

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 124/294 (42%), Gaps = 26/294 (8%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + L+     SK TL+ Y      F+ F    + + IT+      +     +++S     K
Sbjct: 11  KYLDFHSSKSKETLKRYRSSLHIFMEFFPDKSWDDITVDD----AIFFYNSYLS-----K 61

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLKKSN-SLPRALNEKQALTLVDN 140
           +   ++ + L  +  FL +  + K   ++NI L +++LK  N     +LNE++   L+ N
Sbjct: 62  VSKDTVVKRLKDVSRFLDWCVEYKYILQNNIKLYVKSLKLQNNGRDISLNEEEVNILLSN 121

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRI 199
           +           D         +   G+RISE  ++T  +I  +   + I+G KG+K R+
Sbjct: 122 IK----------DYLYYVYTLFILTTGVRISEFKNITMNDIHLEDRLVYIRGGKGNKDRM 171

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-GLPL 258
           V +   +   +  Y         LN +        G  L+ G    Y   LR    GL +
Sbjct: 172 VFICDELYPFLSNYIKHREM---LNPKTDKLVNKNGYKLSEGHICEYRDYLREVSKGLSV 228

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             T H LRH+F T    +G +L+ +  ++GH  ++ T  Y + +     + + +
Sbjct: 229 KVTPHVLRHTFGTLACKHGMNLQVLSKLMGHSSMAITSKYLHPDRDTMKNDLNK 282


>gi|160937812|ref|ZP_02085171.1| hypothetical protein CLOBOL_02704 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439251|gb|EDP17004.1| hypothetical protein CLOBOL_02704 [Clostridium bolteae ATCC
           BAA-613]
          Length = 278

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 54/310 (17%), Positives = 116/310 (37%), Gaps = 38/310 (12%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P ++S   L + Q +L    +    S  T+  Y     QF                  QL
Sbjct: 5   PRLMSNHALDQFQKYL----MTHNKSPNTICVYRYAVEQFYHLYP-------------QL 47

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           +   ++ +      +    +++   +  +  +++Y +          ++M  +++   L 
Sbjct: 48  TPRNLQLYKVYLL-EHYRPQTVNLRIRALNCYMEYRQ-----ASITPVSMIKIQQKTYLD 101

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + +++     L    L  +   T         I+ L+   G+RISE ++   +++     
Sbjct: 102 KIISQADYEYL-KRCLAESEEYT------YYFIVRLITATGVRISELITFQIEDVHTGHK 154

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            +    KG+K+R V +   + + + E+              PLF      P++P   +  
Sbjct: 155 DIY--SKGNKMRRVYIPRGLVRELQEWLAATH-----RSTGPLFLNRFHSPISPSGIRAQ 207

Query: 247 IRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +      GL       H+ RH FA + +   GD+  +  +LGH  + TT+IY   +S  
Sbjct: 208 FKVFAARYGLDPEVVYPHSFRHRFAKNFIEKCGDISLLSDLLGHESIETTRIYLRRSSSE 267

Query: 306 GGDWMMEIYD 315
               + ++ D
Sbjct: 268 QYRIVNKVVD 277


>gi|307566138|ref|ZP_07628595.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345150|gb|EFN90530.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 324

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 62/315 (19%), Positives = 120/315 (38%), Gaps = 20/315 (6%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           L E+ + EL   +++      + +  ++ T  +     R    F+     + I I++I +
Sbjct: 9   LLELSNAELQSVKES------VGKSKAEGTYTNLCYANRMLCEFIKDLESKDIEIRSITE 62

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
             + E R F+   + + +   ++   L  +   +     ++I   + + N +  K    +
Sbjct: 63  ELFEEYRFFL---KKKGLKGSTINNYLCWLSRLMFRAVSKRIIRCNPLDNAKYEKDEKKI 119

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--- 182
            R L +   + L+   +     E          +       GL IS+  +L  ++I    
Sbjct: 120 -RFLQKSDVMKLMSMRMNDKETELA------RQMFIFSCFTGLAISDMENLKYKHIQTAA 172

Query: 183 DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
           D Q  +R  + K     IVPL P  +  I +   L       N      R I     +  
Sbjct: 173 DGQMYIRKERQKTKMEFIVPLHPIAKTIIEQQRQLKAVKEEGNNTDMDNRLIFQPCCSRS 232

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           V    +  + R  G+    + H  RH+F T  LS G  + SI  ++GH  +++TQIY  V
Sbjct: 233 VLAAKLSIVGRACGIKQRLSYHMGRHTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQV 292

Query: 302 NSKNGGDWMMEIYDQ 316
                 + M  +  +
Sbjct: 293 TDCKISEDMDRLIAK 307


>gi|116514048|ref|YP_812954.1| site-specific tyrosine recombinase XerS [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|116093363|gb|ABJ58516.1| Site-specific recombinase XerD [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 349

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 63/344 (18%), Positives = 129/344 (37%), Gaps = 42/344 (12%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYT 54
           ME      ++  E + +  ++++  ++E   S  T   Y  + R+F  +L          
Sbjct: 1   METKKYLSLIDRE-MAQMPDFVKEYQLETRHSLTTSYQYLTEIRRFFSWLIAENLTQAKN 59

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKI------GDRSLKRSLSGIKSFLKY------- 101
             ++    + +LS +++  ++ K    K          ++ RSL+ ++S  KY       
Sbjct: 60  PSQVLPSDLEKLSRSDVMLYLDKLEHSKNKQGHLNSPTTVNRSLNALRSLYKYLTITADK 119

Query: 102 LKKRKITTESNILNMRNLKKSNSL---PRALN--------EKQALTLVDNVLL-----HT 145
                    + +L + +L  +++L     AL         + Q +  +D           
Sbjct: 120 NNGEPYFDRNVMLKINSLPYASTLNYRAHALEAHMYTGNLKYQFMDFLDQKFAGLCSGRA 179

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
               K    R+ A++ L+ G G+R+SE   +  +++   ++TL I  KG +   VP+   
Sbjct: 180 LSSFKQNKERDMAVIALILGTGIRVSECAGVDMKDLNLKEATLDITRKGGQRDSVPVADW 239

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLSTT 261
               + +Y  +             F   R       +     ++ + +     G P   T
Sbjct: 240 TLPYLEKYLAIRADRYKAPATNKAFFLTRYHQECRRMTTNAIEKMVGKYSAAFGHP--LT 297

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            H LRH+ A+ L     D   +   LG    S T +YT+V+ + 
Sbjct: 298 PHKLRHTVASELYQATKDQVMVAQQLGQKGTSATDLYTHVDQRE 341


>gi|323693378|ref|ZP_08107593.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
 gi|323502583|gb|EGB18430.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
          Length = 283

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 59/292 (20%), Positives = 110/292 (37%), Gaps = 40/292 (13%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +E ER  S+ T++ Y  D   F  +L             +++      A+      +   
Sbjct: 20  MEQER--SEATIEKYIRDINAFFEWLPEG----------KRVDKPVTIAYKQSLLERGYA 67

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS----NSLPRALNEKQALTLVDN 140
             S+   ++ + SF  Y +            +R L+       S  R L +++   L+  
Sbjct: 68  SSSINSMVAALNSFFSYSEWGD-------CRIRPLRIQAQTMVSEERKLTKEEYKRLL-- 118

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                 H  K  + R   ++  +   GLR+SE   LT + +   ++ +  +GK    R V
Sbjct: 119 ------HAAKEKNERLYLVMQSICSVGLRVSELKFLTVEAVHRGRTVVNNKGKM---RTV 169

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LS 259
            L P +   + +Y               +F    G+PL+       +++L +  G+    
Sbjct: 170 VLPPKLCLILKQYCRRQRVTGGS-----IFVSRTGRPLDRSNIWSAMKELAKAAGVAADK 224

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              H LRH FA+       D+  +  ILGH  ++TT+IYT   +      + 
Sbjct: 225 VFPHNLRHLFASVYYERFQDIVKLADILGHSNVNTTRIYTTATAAQYQAQIA 276


>gi|148550554|ref|YP_001259993.1| phage integrase family protein [Sphingomonas wittichii RW1]
 gi|148502973|gb|ABQ71226.1| phage integrase family protein [Sphingomonas wittichii RW1]
          Length = 304

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 61/302 (20%), Positives = 120/302 (39%), Gaps = 27/302 (8%)

Query: 9   IVSFELLKERQNWLQNLEI-ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           +++      R  +L+   +  R     T ++Y      FL +      E   + ++  + 
Sbjct: 1   MIAAADDATRLRFLEFFAVTIRN--PHTRRAYARAAGDFLAWC-----EARGVASLAGVQ 53

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
              + A++     +++   S+K+ L+G++    +L    I   +   ++R    S    +
Sbjct: 54  PLHVAAWVEAL-GRELAAPSVKQQLAGVRHLFDWLVTGHIVPVNPAGSVRGPAHSQRRGK 112

Query: 128 --ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
              L   +A  L+D     T   T     R+ A++ L+     RI  AL++  +++    
Sbjct: 113 TPVLAPDEARRLLD-----TIDVTTPAGLRDRALIGLMVYSFARIGAALAMRVEDVFVQN 167

Query: 186 STLRIQ--GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-------RGK 236
             L ++   KG K   +P   ++   + EY D C  +L  + + PLFR I          
Sbjct: 168 RRLWVRLHEKGGKRHEMPCHHNLEHYLAEYLDGC--ELREDRKGPLFRTIARGTKRLSDT 225

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           PL        +R+      +  +   H+ R +  T  L NGG L +  ++  H    TTQ
Sbjct: 226 PLPQANAFAMVRRRAGAAEIGTAIGNHSFRATGITTYLKNGGTLETAATMANHSSTRTTQ 285

Query: 297 IY 298
           +Y
Sbjct: 286 LY 287


>gi|298245094|ref|ZP_06968900.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297552575|gb|EFH86440.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 396

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 56/302 (18%), Positives = 118/302 (39%), Gaps = 30/302 (9%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T++      + +   +  +    I    +++L+  +++ F +K   + +   ++      
Sbjct: 95  TIE--RSTAQMYGYHIRNHFVPGIGHIALQKLTVEDLQTFFNKLIKEGLQSTTIHLLHRI 152

Query: 95  IKSFLKYLKKRKITTESNILNMRNLK-KSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
           +K+ L    + +   ++    ++  K +     R L  +QA T + N   +  +E + I 
Sbjct: 153 LKAALNDAIRWEKIAKNPARYVKLPKEQEKREKRILTAEQAQTFI-NAAQNALNEGRQIG 211

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK-----------------GDK 196
               A+  L     +RI EALSL    +  ++  +RI+                      
Sbjct: 212 ----AVTLLFMTTAIRIGEALSLHWSEVNFEKKEIRIENTLKYDRENPGFYETGPKSKSS 267

Query: 197 IRIVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           +R + L     + +  +                   +F   +G  +     +  +R   +
Sbjct: 268 VRRILLSRLALETLSAHRINQVEQRLQASEWEDNNLVFTNPKGGHMWDTTIRYQLRSFLK 327

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMM 311
            LGLP     H LRH+ +T L+  G  ++++Q +LGH ++STT  IY +V  K   +   
Sbjct: 328 GLGLPEDLRPHELRHNVSTALIEAGVSIKTVQEMLGHSKISTTMDIYGHVTPKMKQNAAD 387

Query: 312 EI 313
           EI
Sbjct: 388 EI 389


>gi|325674670|ref|ZP_08154357.1| prophage DLP12 integrase [Rhodococcus equi ATCC 33707]
 gi|325554256|gb|EGD23931.1| prophage DLP12 integrase [Rhodococcus equi ATCC 33707]
          Length = 348

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 48/309 (15%), Positives = 111/309 (35%), Gaps = 45/309 (14%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           LA + + K     + +++   I+ ++ +     +   S+++    + S L+  +  ++  
Sbjct: 52  LAKHVDPKWGDVKLNKITGHGIQVWLRELEDAGLSASSVQKCFHLLSSSLRAAEFARMIP 111

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
            +    ++  K   ++ R L   +   L              +D  +  ++ LL G GLR
Sbjct: 112 SNPAKGVKLPKGGKNVDRYLTRDEVADL-----------AGVLDDADRLVVELLVGTGLR 160

Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGD------------KIRIVPLLPSVRKAILEYYDLC 217
           + EAL L  +++   + T+ +    D            + R VP+  S+ + + +     
Sbjct: 161 LGEALGLHWESVDLSRRTIHVARSWDPVGGSMKPPKSWQQRTVPISRSLAELLEKELRGR 220

Query: 218 ----------PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL------PLSTT 261
                       ++     L L       PL     +           +           
Sbjct: 221 GPGSPPDVEYYREVRARSGLVLPARRGHGPLGEKHLRSRWNDAFALASVVRTKRGQEPIA 280

Query: 262 A---HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
               H LRH++A+ L+ +G  +  ++++LGH  + TT+ Y ++           + D   
Sbjct: 281 PARIHDLRHTYASWLVQDGVSIYELKNLLGHESVKTTERYAHLAPTQWDAVRAALGD--- 337

Query: 319 PSITQKDKK 327
           P   +  K+
Sbjct: 338 PPAGRAKKR 346


>gi|253584229|ref|ZP_04861427.1| site-specific recombinase [Fusobacterium varium ATCC 27725]
 gi|251834801|gb|EES63364.1| site-specific recombinase [Fusobacterium varium ATCC 27725]
          Length = 333

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 128/303 (42%), Gaps = 26/303 (8%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI----RQLSYTEIRAFISKR-RTQ 81
            E   S+ TL+ Y    + FL F+ +  EE I    +    + +   ++  +I      +
Sbjct: 28  FEIYRSQKTLKDYMFYLKDFLNFV-YEGEEGIRADELIELMKDIEKQDVEDYIGYLVEER 86

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL--NEKQALTLVD 139
           K+   S+ + +S +KS  K ++K     E+    +   K S ++   L  + +    ++ 
Sbjct: 87  KLKKTSINKIISSLKSLYKEMEKNGY--ENPFKYVELFKVSRNIDNVLKLSFEDIKKIIG 144

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDK 196
              ++        D RN  ILY L+  G+R  E ++L  ++I++ + +  I+    K  +
Sbjct: 145 QYKINGEK-----DYRNVNILYTLFYTGMRSQELINLKFKHILEREGSYYIKLEETKSGR 199

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNI----QLPLFRGI--RGKPLNPGVFQRYIRQL 250
            +   +   + + + EY +      N++     +  +F     +   L+       ++ +
Sbjct: 200 EQYKSVHNILVQRLKEYKEYLQALYNIDDVMIEEQYVFSSSVEKNTQLSYRALYDLVQNM 259

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            + +G     + H +RH+ AT L  NG D+  I+  LGH     T++Y N  S      +
Sbjct: 260 GKLIG--KDISPHNVRHAVATELSINGADILEIRDFLGHADTRVTEVYINAKSILEKRVL 317

Query: 311 MEI 313
            ++
Sbjct: 318 EKL 320


>gi|116071373|ref|ZP_01468642.1| possible integrase/recombinase [Synechococcus sp. BL107]
 gi|116066778|gb|EAU72535.1| possible integrase/recombinase [Synechococcus sp. BL107]
          Length = 323

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 58/293 (19%), Positives = 110/293 (37%), Gaps = 27/293 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+     R  SK T   Y  + R F+ +     +       +R+L    +  ++S 
Sbjct: 34  LKRFLKQCS--RTGSKETQDGYRRELRHFVRW----RDRNHPHLHLRELDPALVDDWVSL 87

Query: 78  RRTQ----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK----SNSLPRAL 129
            R Q     +  RS  R +S + +  ++  +   +  S +      ++    +  L + L
Sbjct: 88  LREQVAIGSLKPRSFNRRVSAVSALYRWASELTRSAVSGVPRNPIPRRTGMSAPKLAKPL 147

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQST 187
            E    +++  V+     +   I AR+  ++   Y  G R+SE   L  ++   +D+   
Sbjct: 148 AESDLTSVL-GVISAAKVKGSAIAARDYVMVRGSYLLGCRVSELCRLRWEDIEPLDEGGN 206

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR-GIRGKPLNPGVFQRY 246
           +R+ GKG K R + +     +       L            LF    R  PL        
Sbjct: 207 VRLLGKGSKPRTIRVSTETLE-------LFESLGRGEPGDWLFPSNKRNGPLTRQAVAAR 259

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           +    R + +    T H  RH+ AT  +  G D+ ++ + LG     TT  Y 
Sbjct: 260 MAMWGREVNV--RLTPHRCRHTHATFAIRRGVDVFTLSATLGRSSTGTTSHYV 310


>gi|295840998|dbj|BAJ06875.1| integron integrase intI [uncultured bacterium]
          Length = 292

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 62/284 (21%), Positives = 115/284 (40%), Gaps = 60/284 (21%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           R  S  TL++Y     QF  F           +  + LS  +++ F++     +K+   S
Sbjct: 31  RHYSPKTLRAYRGWAGQFQSFTKS--------KDPQLLSAADVKDFLTFLAVKRKVPASS 82

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++ + +  F +++ K++      I ++   K+  ++P  L+ ++  +++         
Sbjct: 83  QNQAFNALLFFFRHVLKKEFEE---IKDVPRAKRKRNIPVVLSREEIDSII--------- 130

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
               +      ++ +LYGCGLR+SE +SL  Q++  DQ  L +  GKG K R VPL  ++
Sbjct: 131 --SALAYPYDLVVKMLYGCGLRLSECMSLRVQSLNFDQRVLTVHDGKGKKDRAVPLPETL 188

Query: 207 ------------------------------------RKAILEYYDLCPFDLNLNIQLPLF 230
                                               + A +E      F       +P  
Sbjct: 189 MPELKAQLEVVKGVHESDLTEGYAGAFLFDSLGEKYKNAAIELPWQWFFPGKTLTFVPEE 248

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           +  R   L+    Q+ IR+  +   +    +AHT RH+FATHLL
Sbjct: 249 KEYRRYHLHDSHVQKAIRRAVKKAKITKRASAHTFRHTFATHLL 292


>gi|146292724|ref|YP_001183148.1| phage integrase family protein [Shewanella putrefaciens CN-32]
 gi|145564414|gb|ABP75349.1| phage integrase family protein [Shewanella putrefaciens CN-32]
          Length = 235

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 59/262 (22%), Positives = 108/262 (41%), Gaps = 36/262 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q +   + + RG S  T  +Y     Q   +           Q +  ++  ++ A+   
Sbjct: 5   LQQFHDEISL-RGYSARTRNAYLYAITQLQQYAN---------QPLDNITDEQLTAYFRY 54

Query: 78  RR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               +     +LK  L+GI  F +++ KR        + +   K+ + LP+ L+ +    
Sbjct: 55  LNLERHHSRATLKLQLNGIHFFYEHVLKRDF-----TIQLSLPKRPHKLPQLLSCQDIAA 109

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195
           L+ +              +  A+L L YGCGLR+SE   +   +I   +  L++ QGKG 
Sbjct: 110 LLYHC----------QSLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGA 159

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG---KPLNPGVFQRYIRQLRR 252
             R V L P++   + +Y+              LF         PL+   F++ + +  R
Sbjct: 160 CDRWVILSPTLLTLLRQYWRAYH------PVEWLFASTYHDVVYPLHESTFRKALAKSAR 213

Query: 253 YLGLPLSTTAHTLRHSFATHLL 274
             G+    + H+LRH++ATH L
Sbjct: 214 LAGITKPCSPHSLRHAYATHQL 235


>gi|15668543|ref|NP_247341.1| integrase/recombinase [Methanocaldococcus jannaschii DSM 2661]
 gi|2497424|sp|Q57813|Y367_METJA RecName: Full=Probable integrase/recombinase protein MJ0367
 gi|1591073|gb|AAB98346.1| integrase/recombinase [Methanocaldococcus jannaschii DSM 2661]
          Length = 330

 Score =  125 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 60/299 (20%), Positives = 127/299 (42%), Gaps = 20/299 (6%)

Query: 13  ELLKERQNWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           E   + + +L+  E ER   G+ + T++S   D  +  +FL +        +   +L  +
Sbjct: 23  EETDKIKEYLKRFEDERRFDGIKESTIKS---DLDRLRVFLDYCI--NYLGKNPEELKTS 77

Query: 70  EIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           +   F +   T +K+   S ++    +K F + L+   +  E    +    + +    + 
Sbjct: 78  DFVKFFNYLDTVRKVSKSSQRKYFLLLKVFYRVLRMYNVIQEFVEESKDRKRFARIEIQH 137

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
            +   A  +++ +L            R++ I+ LL+  G R+SE L+L  ++   D    
Sbjct: 138 YDAVDAE-MLNMILKKIIESGSRTRIRDALIIRLLWDTGCRVSEVLNLKYKDCDLDNGIF 196

Query: 189 RIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN----PGVF 243
           +I+  K  + R V       + +  Y     F++       LF+  +G  +       VF
Sbjct: 197 KIRNTKTHEERTVVCSSDTLELLRNY---VQFNVRQGSDDYLFQNSQGGRVRKEWISEVF 253

Query: 244 QRYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           ++ + +L+    +P +     H++RH  A  LL+ G  +  ++  LGH  ++TT IY +
Sbjct: 254 RKAVNELKEEGKIPKNRRIVIHSIRHGRAVDLLNKGVPIDIVKEYLGHKSMNTTLIYAH 312


>gi|313895192|ref|ZP_07828749.1| phage integrase, N-terminal SAM domain protein [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312976087|gb|EFR41545.1| phage integrase, N-terminal SAM domain protein [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 352

 Score =  125 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 54/282 (19%), Positives = 101/282 (35%), Gaps = 16/282 (5%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T  +YE   R FL +          +  +  +   +IR ++ + R       +L    + 
Sbjct: 68  TRDTYELAIRLFLRWCVAQ-----GLHPLNDVRDYQIRVYMEEMRRSNYSAATLMIKGAA 122

Query: 95  IKSFLKYLKKRKITTESNI--LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           I++F K  ++     E+    L +RN +  +   + L   Q     +        +    
Sbjct: 123 IRAFYKVAQRLSFIAENPCAELQLRNPQHLDEDYKYLTVDQI---GEICAYLKEDKDALK 179

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
             RN  I+YL+   GLR+ E + L+ ++I   +  + I+GKG    ++       + +  
Sbjct: 180 RLRNLLIVYLMGVEGLRVVEVMRLSDEDIDWQRGRIEIRGKG-HAGLIYPCEETLELLKA 238

Query: 213 YYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRH 267
           Y +        N   P             ++    +  I +     GL       H  RH
Sbjct: 239 YLEERGAVPQENRLTPTIISCSSNNAQGRISRVGIRYVINRALTAAGLKQPGYACHLFRH 298

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           S  T+L     DLR +Q  L       T  Y +V+ +    +
Sbjct: 299 SCGTNLYQETKDLRVVQETLRQRSPKVTAKYAHVHDRMERRY 340


>gi|163855807|ref|YP_001630105.1| putative integrase/recombinase [Bordetella petrii DSM 12804]
 gi|163259535|emb|CAP41836.1| putative integrase/recombinase [Bordetella petrii]
          Length = 419

 Score =  125 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 123/294 (41%), Gaps = 17/294 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   L  E+GL + ++ +Y    R F  +LA          ++ +L+   I  FI+  R 
Sbjct: 131 FFPFLLKEKGLRQTSIHNYTFTLRPFDSYLAQAGI------SLDKLTPACITEFIND-RA 183

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALTLV 138
           + +    +  +   ++ FL+YL +  I     + ++   +  +  S+PRA+       L+
Sbjct: 184 KTLHKSGMLNTAGALRVFLRYLHREGIIANDLVRSVPRGRVYRQASIPRAIGWADVERLL 243

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197
                 +      +  R+ AIL LL   GLR  E ++L   ++      + I   KG   
Sbjct: 244 -----ASIDRRSDLGKRDYAILTLLTSYGLRAREIVALCLDDLDWAHGQIGIPMRKGGHS 298

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
              PL  +V +AI+ Y  +   D++ + ++ L       P+N       +    R +G+ 
Sbjct: 299 TRYPLSAAVGEAIIAYLHVRRTDID-DRRIFLTVRSPYTPMNHWTVSSMVAGHLRSIGIQ 357

Query: 258 L-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           +    +HTLRHS   HL+      + I   +GH   ++T +Y  V      + +
Sbjct: 358 VARAGSHTLRHSCVQHLVEADLPFKVIGDYVGHRHPASTLVYGKVAVHKLREMV 411


>gi|22096306|gb|AAM92159.1| TnpA-like protein [Staphylococcus aureus]
          Length = 361

 Score =  125 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 66/351 (18%), Positives = 137/351 (39%), Gaps = 69/351 (19%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           FE+++   ++++ L+     S  T+++Y    + F +F+           ++ ++ + E+
Sbjct: 23  FEVVEPVMSFIKYLDNT-NKSPNTIKTYCYHLKLFYVFMQQRKI------SLDEIQFDEL 75

Query: 72  RAFISKRR--------------TQKIGDRSLKRSLSGIKSFLKY---------------- 101
             F+   R                K  + ++   L+ + S+L+Y                
Sbjct: 76  ANFVGWLRNPTENANVIDIHPKEAKREESTVNAILNAVISYLEYLSRSGGFKMLDLFNET 135

Query: 102 --LKKRKITTE-----SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
                +              N+  L++   + R LN  +   +V+               
Sbjct: 136 RGRNYKGFLHHVSKGKPYKRNVLKLREKKKMIRTLNHSEVKEIVEAC----------HTL 185

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----------KGDKIRIVPLLP 204
           R+  I+ L+Y  G+RI E LSL   +I+   + + I            K  K R++ +  
Sbjct: 186 RDKLIIMLMYEGGMRIGEVLSLRLADIVTWDNQVHITPREESLNGAYIKLRKERVIHVSK 245

Query: 205 SVRKAILEYYDLCPFDLNLN--IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            +     +Y     +D   +  + + L     G+PL        +R+L +  G+    T 
Sbjct: 246 ELMALYTDYLVHEYYDELEHDYVFIALKESHFGQPLKYQSVLDLVRRLNKRTGIVF--TP 303

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMME 312
           HTLRH+ AT L+ NG D   +Q  LGH ++ TT   Y ++++++  +   +
Sbjct: 304 HTLRHTHATELIRNGWDAAYVQKRLGHAQVQTTLNTYVHLSNQDMKEEFKK 354


>gi|295092319|emb|CBK78426.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
 gi|295114672|emb|CBL35519.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1]
          Length = 281

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 63/300 (21%), Positives = 124/300 (41%), Gaps = 34/300 (11%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ++  + +L  +E E+  S  T++ Y  D R F  FL    EEKI       +    +  +
Sbjct: 11  MEAYRIYL--MESEK--SPSTIEKYLRDIRNFYQFL---PEEKI-------IDREAVLLY 56

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
             +    K    S    +  +  FL ++   ++        ++  K   ++   +++ + 
Sbjct: 57  KRQLIP-KYQISSANSMIIAVNGFLSFMGLEEL-------RVKVFKFQRAM---VSDPER 105

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
               +  +       +   +R S IL  L   G+RISE + +T + +   ++ + ++GK 
Sbjct: 106 EIQREEYIRLVEEAERMGKSRLSLILQTLGATGIRISELVCITREAVSSGRAAVNLKGK- 164

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
              R+V L   +R+ +  Y        N     P+F    GKP++       ++ L +  
Sbjct: 165 --TRVVILPKRLREKMEIYCRE-----NQIYSGPVFVTRGGKPVDRSNIWSEMKILCKTA 217

Query: 255 GL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           G+       H LRH FA     N  D+  +  ILGH  + TT+IYT+++       + ++
Sbjct: 218 GINEKKIFPHNLRHLFARIYYKNNHDIVYLADILGHSSVETTRIYTSISGFEHEKVLEDM 277


>gi|298528009|ref|ZP_07015413.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511661|gb|EFI35563.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 390

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 59/277 (21%), Positives = 116/277 (41%), Gaps = 22/277 (7%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           ++Y+    Q    +          + +  ++  ++  F +      +   S+ R ++ +K
Sbjct: 115 KTYKKSWEQDQTMIEQRMLRVWGRRKLNSINTHDLIEFQNNLVKGGLKAGSVNRYMALVK 174

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
                 ++ +I  ++   N R L+ + +  R LN+++   L++       +  K     +
Sbjct: 175 YIFNLAERWEIIDKAPTRNARKLEDNGARERYLNQEEVYRLLE-----ALNSCKSQVVPD 229

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEY 213
             ++  L   G R +EA  LT Q +  ++    +   + K  K + VPL  +  K +   
Sbjct: 230 --LIEFLLLTGARKTEAAELTWQEVDMERGIWELPAQRNKAGKPKTVPLSEAAIKVLKR- 286

Query: 214 YDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                     N    +F      KPL    F     ++R+  G+P S   H LRHSFA+ 
Sbjct: 287 -------RADNGSRWVFPNPETGKPL--RHFHNTWDRIRKQAGIP-SARLHDLRHSFASF 336

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           L+++G  L  +Q +LGH +LSTTQ Y ++      + 
Sbjct: 337 LVNSGRSLYEVQKLLGHSQLSTTQRYAHLTEDTLKEA 373


>gi|172058626|ref|YP_001815086.1| integrase family protein [Exiguobacterium sibiricum 255-15]
 gi|171991147|gb|ACB62069.1| integrase family protein [Exiguobacterium sibiricum 255-15]
          Length = 287

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 64/288 (22%), Positives = 113/288 (39%), Gaps = 39/288 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
            S LT ++Y  D R F                   +    +  +I+  + Q     ++ R
Sbjct: 19  YSPLTRKAYRVDARHFCTHA-------------ETIDIPSMHRYITLLK-QTYAPTTVSR 64

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR---ALNEKQALTLVDNVLLHTSH 147
            +  + +    L   K    + +  ++    +  LP+   A +  +A ++++        
Sbjct: 65  RIHALATLFDALVAEKSIPSNPLSRIKKP--TRPLPKHRTAFSYTEARSVIE-------- 114

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
                D       +LL   GLR +EA  L   +I   +  L ++ GKG K R VPL   +
Sbjct: 115 --TLQDETMYTFYFLLLHTGLRFNEARQLCRTDIDLTERQLFVRHGKGQKTRYVPLHDEL 172

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              ++ Y       L+L    PLF+   G  L+P   +R +R     L L  +   H LR
Sbjct: 173 VTVLIRY-------LDLQPNGPLFQNTAGGLLDPNQTRRQLRLASEQL-LKRTLRPHDLR 224

Query: 267 HSFATHLL-SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            +FAT +   +  DL ++  +LGH    TTQ Y   +S+     +  +
Sbjct: 225 VTFATTIYREHRADLLTVMRLLGHSDAKTTQQYILPSSEVARSSINRL 272


>gi|265763937|ref|ZP_06092505.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263256545|gb|EEZ27891.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 266

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 52/300 (17%), Positives = 109/300 (36%), Gaps = 41/300 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             +++  L      S  T+  Y    +++  +               +++    R FI  
Sbjct: 2   LNDFIVWLTDNNDYSPHTVDLYHTSMKKYFEYA-------------NEVNMDNCRRFIKM 48

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR--ALNEKQAL 135
               K    +++  ++ I+ F K++KK         + ++  K    L       E +  
Sbjct: 49  LEEGKFAPATIRLRITAIERFSKWMKK--------PVELKRPKMKRKLDTNNVPTEDEYN 100

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L++ +   ++ +           + +L   G R+SE L  T ++I+  + TL+  GKG+
Sbjct: 101 RLLEYLKTKSNKD-------YYFFIRVLGTTGARLSEFLQFTWEDIISGEVTLK--GKGN 151

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R       +++ +  Y            +  L    R  P+      + ++      G
Sbjct: 152 KYRRFFFQRQLQQEVKAY-------AKEYGKTGLLAVGRFGPMTQRGLSQGMKDWGNCCG 204

Query: 256 L-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN-SKNGGDWMMEI 313
           +       H  RH FA   L    D+  +  +LGH  + TT+IY   +  +   D+   +
Sbjct: 205 IDKKKMHPHAFRHFFAKMFLKKNKDVIQLADLLGHGSVDTTRIYLQKSYDEQKRDFNKNV 264


>gi|206603937|gb|EDZ40417.1| Integrase [Leptospirillum sp. Group II '5-way CG']
          Length = 388

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 85/231 (36%), Gaps = 17/231 (7%)

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +   + K   +     ++ R L  +K+      K +I   + I  +   K  NSL R L 
Sbjct: 115 VEEVMEKMNKEGYKPATIARCLVVLKAVYNRAVKNEIIERNPIARVFAPKFDNSLVRYLT 174

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             Q   L +            +  R   I+ +    G R  E L L  +++  +  T+ +
Sbjct: 175 TDQEERLFEA-----------LPERLHPIVTVALHTGCRQGELLKLVWEDVDFNAGTIFL 223

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +          L+ S  + +L                P+F    G P+     +R   + 
Sbjct: 224 RDTKSGDSRRVLMNSKVQEVLLALPGRD-----TPGAPVFTDTLGGPMEGRNLRRDFDRA 278

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            +  GL      H LRH+FA+ L   G + R++Q++LGH        Y ++
Sbjct: 279 IKKAGLA-PFRFHDLRHTFASRLAMMGANDRTLQTLLGHKSQRMILRYAHL 328


>gi|228942857|ref|ZP_04105374.1| Integrase [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228976751|ref|ZP_04137168.1| Integrase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228782964|gb|EEM31126.1| Integrase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228816813|gb|EEM62921.1| Integrase [Bacillus thuringiensis serovar berliner ATCC 10792]
          Length = 375

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 72/351 (20%), Positives = 132/351 (37%), Gaps = 47/351 (13%)

Query: 10  VSFELLKERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL-----------AFYTEE 56
              E  KE+  W  ++ +E +  LS  TL  Y  +   FL +L                 
Sbjct: 18  ARVERHKEKMPWYIIEYIEEKTNLSPATLYGYLIEYEMFLQWLISSRLATVDGKVVTEIH 77

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY--------------- 101
           ++TI+T+  L   +++ F S    Q    +++ R+ S +KS   Y               
Sbjct: 78  EVTIETLEHLPLKQVKRFKSYLERQGNKTKAVIRTFSALKSLFNYLTSNTEDDNGECYFY 137

Query: 102 --------LKKRKITTESNILNMRNLKKSN----SLPRALNEKQALTLVDNVLLHTSHET 149
                   + K KI + +    +  +   N       R L+  +   ++           
Sbjct: 138 RNVMAKMEIHKEKIDSAARAKEISEVIFHNNDDIKFMRFLS-NEYEKMLQETAPGKLRFF 196

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           K    R+ AIL L+ G GLR+SE  SLT  +I      +++  KGDK   +    +    
Sbjct: 197 KRDKERDIAILSLILGTGLRVSETASLTISSINFRTRYIKVIRKGDKKSSILATQTALDD 256

Query: 210 ILEYYDLCPFDLN-LNIQLPLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           + EY  +        + +  LF          ++    Q+   +  R        + H L
Sbjct: 257 VQEYLKVRANRYKCPDDEDILFVTNYKGSYAQISVNAIQKLTEKYTRA--FDEKKSPHKL 314

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           RH++AT+  +   DL  + + +GH  + TT +YTN++       +  +  +
Sbjct: 315 RHTYATNHYNENKDLVLLANQMGHNSMETTSLYTNIDDTKRRAAIERLEQR 365


>gi|298248766|ref|ZP_06972571.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297551425|gb|EFH85291.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 348

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 62/332 (18%), Positives = 119/332 (35%), Gaps = 50/332 (15%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WLQ ++   GL+  T+++Y     ++L          I+       +   +  ++    T
Sbjct: 21  WLQ-IQANLGLAPNTIEAYARALEEYLALCIRTKVAAISA------TKEHVSWYVHDLMT 73

Query: 81  Q---------------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-------MRN 118
           +                + + +L + L+ I+ +  YL +  I   + +         +  
Sbjct: 74  RPNPRGEKITTLDSGVGLANATLHQRLTAIRLWYDYLIEEGIRDANPVGRGRYTPGKIVY 133

Query: 119 LKKSN-------SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
            K+          LP   +E+Q   +++               RN  +L L Y   LR  
Sbjct: 134 GKQERGLIPRLSKLPWIPDEEQWKGIIEAARQEP--------VRNRVMLALAYDAALRRE 185

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV-RKAILEYYDLCPFDLNLNIQLPLF 230
           E  SL   +I   Q  L I+ +  K R   ++P     A L    L    +    + PLF
Sbjct: 186 ELCSLLTSDIDPAQRLLTIRAETTKNRRARVVPYTEATAQLYINYLKERRVLSRARGPLF 245

Query: 231 RG----IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
                  R +P+    + + I+ +    G+ +  + HT RH   T L  +G D+  I + 
Sbjct: 246 LSDSNRNRTQPITIWTWSKVIKGIAERSGV-IQLSTHTFRHLRLTDLARSGWDIHEIATF 304

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
            GH  + +T  Y +++       +       H
Sbjct: 305 AGHRSVESTLQYIHLSGGELAVKLERGMKSLH 336


>gi|254303856|ref|ZP_04971214.1| site-specific recombinase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148324048|gb|EDK89298.1| site-specific recombinase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 328

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 60/298 (20%), Positives = 126/298 (42%), Gaps = 26/298 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTI----RQLSYTEIRAFISKR-RTQKIGDR 86
           S+ T++ Y    + FL F+ +  E   +I  +    + +   ++ A+I      +K+   
Sbjct: 33  SEKTVKDYMFHLKDFLHFV-YEGENDFSISEVIPLMQDIEKEDVEAYIVHLFEDRKLKKT 91

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL--NEKQALTLVDNVLLH 144
           S+   LS +KS  K L+   +  ++ +  ++  K + ++   L  +      ++    + 
Sbjct: 92  SVNTILSALKSLYKELESNGL--KNPVKYIKLFKVNRNIENVLKVSIDDIRKIIGLYKID 149

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR---IQGKGDKIRIVP 201
           +  +      RN  ILY L+  G+R  E L+L  ++ +  +       ++ K  K    P
Sbjct: 150 SEKK-----YRNITILYTLFYTGMRSKELLTLQFKHYLKREDEYFFKLVETKSGKDVYKP 204

Query: 202 LLPSVRKAILEY----YDLCPFDLNLNIQLPLFRG--IRGKPLNPGVFQRYIRQLRRYLG 255
           +  S+ K + EY      +   D+    +  +F    +   PL+       I+ + + +G
Sbjct: 205 IHKSLVKKLEEYKKYLMSMYSLDIKDLDEHYIFSTSILDNSPLSYRSLNAIIQDMGKLIG 264

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                + H +RH+ AT L  +G D+  I+  LGH     T++Y N  S      + ++
Sbjct: 265 --KDISPHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARSILEKKVLEKL 320


>gi|58616226|ref|YP_195355.1| integrase/recombinase protein [Azoarcus sp. EbN1]
 gi|56315687|emb|CAI10331.1| probable integrase/recombinase protein [Aromatoleum aromaticum
           EbN1]
          Length = 373

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 57/308 (18%), Positives = 114/308 (37%), Gaps = 44/308 (14%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR----------- 79
            S+ T+ +Y+ +T +FL ++   +       ++  L Y +++ F    R           
Sbjct: 48  ASENTMAAYKAETLRFLAWMKTRSI------SLDGLVYEDLQDFEEWLRNPPADLIGPRR 101

Query: 80  -----------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPR 127
                      +  +   S++R+LS I +   +L + +  + + +   R   K +    R
Sbjct: 102 PIGSPDWRPFASAGLSSTSVERALSVIANLYSFLHESRRVSMNPVKFYRAWQKNARKKNR 161

Query: 128 A-LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DD 184
           +    KQ  + V++ +     +       +   +  LY  GLR+SE  S    ++   D 
Sbjct: 162 SQRTRKQLESSVESAVRQWLDDEAGASISDRWSVGALYFLGLRVSELCSARMSDLFVSDG 221

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---LNPG 241
              L + GKG K R V +     + +  Y            +     G +  P   +   
Sbjct: 222 AWFLAVVGKGLKRRDVAVSKVCLRLLAAYRLDVGLSPEPRGEDWPLVGSKWDPKKPITRR 281

Query: 242 VFQRYIRQLRRYL---------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
              + I                 L  +   H  RH+ A+  +  G +L S++  LGH  +
Sbjct: 282 AMHKRIVAAGLDAVFDENSPGKELSANLHPHLYRHAAASRWIRQGANLLSVRDQLGHSSV 341

Query: 293 STTQIYTN 300
           +TT+IY +
Sbjct: 342 TTTEIYAH 349


>gi|298531211|ref|ZP_07018611.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508821|gb|EFI32727.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 394

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 102/247 (41%), Gaps = 16/247 (6%)

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
            +++  +++ F S          ++ R ++ +K      +K  +  ++   ++  L+ +N
Sbjct: 142 SEITRDDVQQFQSNFLRAGCKPGTVNRYMALVKYIFNLAEKWDVIEKTPARHISRLEDNN 201

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
              R L+ ++   L+  +    S            I+ LL   G R SE ++L  Q +  
Sbjct: 202 CKERYLSSEETKRLLGELKNCKSQVVPD-------IIELLILTGARKSEVVNLPWQELDL 254

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGV 242
            Q    I  + +K +    +P  + A+             N    +F   +   P+    
Sbjct: 255 KQGLWTIPPERNKAKTRKTIPLSQGALRILEKRKH-----NGSEYVFPNPKTGGPI--KH 307

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           F     ++R+  G+P     H LRH+FA+ L+++G  L  +Q +LGH  +STTQ Y ++ 
Sbjct: 308 FHNTWDRVRKNAGIP-DVRIHDLRHNFASLLVNSGRSLYEVQKLLGHSNISTTQRYAHLT 366

Query: 303 SKNGGDW 309
                D 
Sbjct: 367 QDTLRDA 373


>gi|229078262|ref|ZP_04210827.1| Transposition regulatory protein TnpA [Bacillus cereus Rock4-2]
 gi|228705062|gb|EEL57483.1| Transposition regulatory protein TnpA [Bacillus cereus Rock4-2]
          Length = 374

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 60/357 (16%), Positives = 132/357 (36%), Gaps = 79/357 (22%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+ L+   G S  T ++Y    +Q+ ++L  +       +   ++   ++  F+   R
Sbjct: 29  KYLKYLDNT-GKSSNTQKTYCYALKQYFVYLQEFK------KDYNKIQLEDLVEFVGWIR 81

Query: 80  T----------QKIGDR----SLKRSLSGIKSFLKYLKKRKITTESN------------- 112
           +          Q I  R    ++   ++ + +F  YL +    +++              
Sbjct: 82  SPYENNKVIPIQPIKARKTEKTINLIVTVVTNFYDYLYRNGELSKNTKDMLMRYVFTGGN 141

Query: 113 ----------------ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
                           I N+  +K+       L ++    ++           +  + R+
Sbjct: 142 KRYRSFLHHINKDNPCIKNVLKVKEPRKRINTLTKEDVKRII----------LETTNIRD 191

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-----------GKGDKIRIVPLLPS 205
           S ++ LL+  GLRI E LSL  ++ + D    +I+                 R++ +  S
Sbjct: 192 SFLIQLLFETGLRIGEVLSLFMEDFIFDYKGHKIRLTDRGELENGAKLKTGERMIFISQS 251

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRG----KPLNPGVFQRYIRQLRRYLGLPLSTT 261
           +     +Y       L+++    +F  +RG    +P+  G  +   ++LR+  GL     
Sbjct: 252 LMDLYDDYQYEVIDKLDIDTNF-VFVKLRGENKGRPMTYGDVESLFKRLRKKTGLA--VH 308

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQT 317
            H  RH+ AT       D++ +Q  LGH  + TT  +Y + + +       +  +  
Sbjct: 309 PHLFRHTHATLYYQETKDIKQVQERLGHTNIQTTMNLYLHPSDEEIRKDWQKAQEAF 365


>gi|218260320|ref|ZP_03475692.1| hypothetical protein PRABACTJOHN_01354 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224605|gb|EEC97255.1| hypothetical protein PRABACTJOHN_01354 [Parabacteroides johnsonii
           DSM 18315]
          Length = 397

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 53/289 (18%), Positives = 109/289 (37%), Gaps = 37/289 (12%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-------------IG 84
           +YE      +  L  +  + I     R +    + +F+   +  K             + 
Sbjct: 122 NYEKTVGNTIRELKLFRGDYI---AFRDIDKDFLNSFVDFLKQAKKASKFGLLKTGGVLS 178

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNM---RNLKKSNSLPRALNEKQALTLVDNV 141
           + S+      +++ +    K  I T +          +K   S    L   +   L+   
Sbjct: 179 NNSVIAYYGVLRTAINRAYKEGIITVNPTKEFDFASKVKAEVSRREYLTIDELKLLI--- 235

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
                 E K+   + + +   L  CGLR+S+   L   ++      +RI+ K  K +   
Sbjct: 236 ----GTECKYEIMKQAFLFSCL--CGLRVSDIRKLKWNDLQKSGERIRIEIKMQKTKEPL 289

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            LP   +A+ ++          ++  PL         + G   + +++  +  G+    +
Sbjct: 290 YLPISDEAL-KWLPQQNEAKGDDLIFPL--------THEGTINKILQKWAKDAGVIKHIS 340

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            H  RH+ AT +L+ G DL ++  +LGH  ++TTQIY  +  K   + +
Sbjct: 341 FHVARHTHATMMLTLGADLYTVSKLLGHKNIATTQIYAKIVDKKKEEAV 389


>gi|295318249|gb|ADF98626.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum F str. 230613]
          Length = 264

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 101/228 (44%), Gaps = 17/228 (7%)

Query: 57  KITIQTIRQLSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNIL 114
           +  ++ I+ +   ++ +FIS  +++      +  R +  I+ F KYLK +  +   +   
Sbjct: 21  QADLEFIKSIILHDMYSFISYFQKSLNSSPGTRARKIVSIRQFWKYLKTKAHLIDNNIAE 80

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            +   K    +P+ LN ++++ L+                R+  I+ +   C LR+SE  
Sbjct: 81  ELETPKLPKRIPKYLNSEESVRLLLECKKS---------PRDHCIITIFLNCALRLSELA 131

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           SL    + +D   L + GK  K R + L P+ +KAI ++  +    +N+N    LF    
Sbjct: 132 SLNIDQVDND--ILSVVGKDTKERKIFLTPAAKKAINDWLHIRN-SINVNTN-ALFISRN 187

Query: 235 GKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNG-GDL 280
              +     Q  +++     GL P S + H LRH+ AT +   G  DL
Sbjct: 188 SNRITTRAIQNIVKKYVITSGLDPKSISTHKLRHTAATLMYKYGRVDL 235


>gi|227515102|ref|ZP_03945151.1| possible tyrosine recombinase [Lactobacillus fermentum ATCC 14931]
 gi|227086434|gb|EEI21746.1| possible tyrosine recombinase [Lactobacillus fermentum ATCC 14931]
 gi|299783228|gb|ADJ41226.1| Putative uncharacterized protein [Lactobacillus fermentum CECT
           5716]
          Length = 359

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 70/352 (19%), Positives = 126/352 (35%), Gaps = 42/352 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK--- 57
           ME      ++  EL K+  +++   ++    S  T   Y  + R+F  +L      K   
Sbjct: 1   METQRYLNLIDREL-KQLPDFVSEYQLGTRHSLTTSYQYLTELRRFFTWLRKTGLSKATD 59

Query: 58  ---ITIQTIRQLSYTEIRAFISKRRTQKI------GDRSLKRSLSGIKSFLKY------- 101
              +T   + +L   +I  FI      K          ++ RS++ ++S  KY       
Sbjct: 60  NAHVTTAELEKLRRNDIMQFIDDLAHTKNAQQRLNSPTTINRSINALRSLFKYLTVTADI 119

Query: 102 LKKRKITTESNILNMRNLKKSNSL---PRALNEK--------QALTLVDNVLLHTSHETK 150
              +     + +L + +L  + +L      L  K          LT +D           
Sbjct: 120 NGGQPYFERNVMLKIDSLNDTKTLNYRAHVLEAKMYTGQLKYDFLTFLDQEYEQKCDPRA 179

Query: 151 WID-----ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
                    R+ A++ L+ G G+R+SE   +   ++     TL +  KG +   VP+ P 
Sbjct: 180 RTAFEKNKERDIALVALILGTGIRVSETAGVDVNDLDLKGQTLEVTRKGGQRDAVPIAPW 239

Query: 206 VRKAILEYYDLCPFDLNL-NIQLPLFRGIRG---KPLNPGVFQRYIRQLRRYLGLPLSTT 261
               I  Y  +          +   F        K ++    +R + +  R  G P   T
Sbjct: 240 TMPYIQAYATIRRQRYQPEKTERAFFLTHYHGQTKRISVNGIERLVSKYSRAFGHP--LT 297

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            H LRH+ A+ L     D   +   LG    S T +YT+V+       + E+
Sbjct: 298 PHKLRHTLASELYDVTKDQVLVAQQLGQKGTSATDLYTHVDQTKQRQALDEV 349


>gi|171057459|ref|YP_001789808.1| integrase family protein [Leptothrix cholodnii SP-6]
 gi|170774904|gb|ACB33043.1| integrase family protein [Leptothrix cholodnii SP-6]
          Length = 417

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 62/304 (20%), Positives = 122/304 (40%), Gaps = 14/304 (4%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P + +  + +E + +  ++   RGL+  +         + L     +    +    I+ +
Sbjct: 114 PPVSTTPVDEELRRYDDHMNHVRGLAPKSRTMVLRIVGRLLA--ERFGGHAV---DIKAI 168

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--S 124
           +   +R F +++             +S ++ + +Y           I  +         S
Sbjct: 169 TPEHVRRFFAEQAALHSKPAGAGSVVSSLRGYFRYRASLGDLVHGLIGALAYPANWALSS 228

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP+ L +++   LV      + +       R  AI+      GLR  E   L+  +I   
Sbjct: 229 LPKKLTDEEVAQLV-----GSLNNPCRAMRRACAIVRCALDLGLRSIEVAQLSLDDIDWH 283

Query: 185 QSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
             T+ ++  KG ++ I+PL  +  +AI  Y +L                 R  P+   + 
Sbjct: 284 AGTITLRHTKGRRVDILPLPVATGEAIARYLELERPKTTNRAIFVRNVAPRDAPIGADLI 343

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +  IRQ     GLP + + H LRH+ A  LL++G  L+ +  +L H  L+TT IY  ++S
Sbjct: 344 RITIRQAYARAGLPYTRS-HLLRHTMANRLLASGSTLKEVADVLRHRSLNTTMIYAKLDS 402

Query: 304 KNGG 307
           ++  
Sbjct: 403 RSLA 406


>gi|163943259|ref|YP_001642489.1| site-specific tyrosine recombinase XerS [Bacillus
           weihenstephanensis KBAB4]
 gi|163865456|gb|ABY46514.1| integrase family protein [Bacillus weihenstephanensis KBAB4]
          Length = 368

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 69/351 (19%), Positives = 127/351 (36%), Gaps = 47/351 (13%)

Query: 10  VSFELLKERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL-----------AFYTEE 56
              E  KE+  W  ++ +E +  LS  TL  Y  +   FL +L                 
Sbjct: 11  ARVERHKEKMPWYIIEYIEEKTNLSPATLYGYLIEYEMFLQWLISSRLAVADGEVVTKIH 70

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY-------LKKRKITT 109
           ++ I T+  L   +++ F S    Q    +++ R+ S +KS   Y               
Sbjct: 71  EVPIDTLEHLPLKQVKRFKSYLERQGNKTKAVIRTFSALKSLFYYLTSNTEDDNGECYFY 130

Query: 110 ESNILNMRNLKKSN--------------------SLPRALNEKQALTLVDNVLLHTSHET 149
            + +  M   K+                         R L+  +   ++           
Sbjct: 131 RNVMAKMEIHKEKIDAAARAKEISEVIFHNNDDIKFMRFLS-NEYEQMLQENAPGKLRFF 189

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           K    R+ AIL L+ G GLR+SEA SLT  ++      +++  KGDK   +    +    
Sbjct: 190 KRDRERDIAILSLILGTGLRVSEAASLTISSVNFRTRYIKVVRKGDKKSAILATQTALDD 249

Query: 210 ILEYYDLCPFDLN-LNIQLPLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           + EY  +          +  LF          ++    Q++  +  R        + H L
Sbjct: 250 VQEYLKVRAVRYKCPEDEDILFVTNYKGSYAQISVNAIQKFTEKYTRA--FDEKKSPHKL 307

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           RH++AT+  +   DL  + + +GH  + TT +YTN++       +  +  +
Sbjct: 308 RHTYATNHYNENKDLVLLANQMGHNSMETTSLYTNIDDTKRRAAIERLEQR 358


>gi|116621892|ref|YP_824048.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225054|gb|ABJ83763.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 246

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 96/262 (36%), Gaps = 40/262 (15%)

Query: 22  LQNLEIE----RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           L+ + +E    R  ++ T++ Y    + F        ++         L    +R + + 
Sbjct: 4   LRKMMLEELQRRNYAQSTVKGYLRIVQDFAEHFHQQPDK---------LGPEHLRQYQAH 54

Query: 78  R-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             + +K+   ++++  + ++ F     KR    +     +   K+   LP  L+  +   
Sbjct: 55  LFQNKKLNASTVQQYAAVLRFFFNKTLKRHYLLDD----IPMPKRHRKLPEILSPDEVAL 110

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGD 195
           L+              +  +  +L  LY  G+R +E   L   +I   +  + I+ GKG 
Sbjct: 111 LI----------GSASNLLHQTMLMTLYSTGVRRAELCRLKSADIDSQRMMVHIRQGKGG 160

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-----IRGKPLNPGVFQRYIRQL 250
             R VPL P + + +  Y+        +  +  LF G         P+   V     RQ 
Sbjct: 161 HDRDVPLSPRLLETLRVYWRW------MKPKTYLFPGTVNNWRADVPITTKVPWEACRQA 214

Query: 251 RRYLGLPLSTTAHTLRHSFATH 272
            +  G+    + HTLRH     
Sbjct: 215 AQRAGITKHVSPHTLRHYAGFR 236


>gi|323484024|ref|ZP_08089395.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
 gi|323402641|gb|EGA94968.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
          Length = 283

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 59/292 (20%), Positives = 110/292 (37%), Gaps = 40/292 (13%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +E ER  S+ T++ Y  D   F  +L             +++      A+      +   
Sbjct: 20  MEQER--SEATIEKYIRDINAFFEWLPEG----------KRVDKPVTIAYKQSLLERGYA 67

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS----NSLPRALNEKQALTLVDN 140
             S+   ++ + SF  Y +            +R L+       S  R L +++   L+  
Sbjct: 68  SSSINSMVAALNSFFSYSEWGD-------CRIRPLRIQAQTMVSEERKLTKEEYKRLL-- 118

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                 H  K  + R   ++  +   GLR+SE   LT + +   ++ +  +GK    R V
Sbjct: 119 ------HAAKEKNERLYLVMQSICSVGLRVSELKFLTVEAVHRGRTVVNNKGKM---RTV 169

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LS 259
            L P +   + +Y               +F    G+PL+       +++L +  G+    
Sbjct: 170 VLPPKLCLILKKYCRRQRVTGGS-----IFVSRTGRPLDRSNIWSAMKELAKAAGVAADK 224

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              H LRH FA+       D+  +  ILGH  ++TT+IYT   +      + 
Sbjct: 225 VFPHNLRHLFASVYYERFQDIVKLADILGHSNVNTTRIYTTATAAQYQAQIA 276


>gi|289549678|ref|YP_003470582.1| Tn554-related, transposase A [Staphylococcus lugdunensis HKU09-01]
 gi|289179210|gb|ADC86455.1| Tn554-related, transposase A [Staphylococcus lugdunensis HKU09-01]
          Length = 367

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 60/354 (16%), Positives = 132/354 (37%), Gaps = 77/354 (21%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ LE     S+ TL++Y    +++ ++L    +           ++ ++  F+   ++
Sbjct: 30  YLKYLESVD-KSENTLKTYAYCLKRYFMYLELIDKNH------NDATFDDLVDFVMWLKS 82

Query: 81  --------------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN-------- 118
                              R++  +++ + +F  YL + K        ++          
Sbjct: 83  PQRYKKVIYKDRLLNSKSARTINLTITVVTNFYDYLFRTKKFNVDIAKSVLKESNRKSSY 142

Query: 119 -------------------LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
                              +K+     + L+  +   L++             + R+  +
Sbjct: 143 KSFLDHVNTNNLLFTNTLKVKEPREKMKILSTSEIKELINASK----------NLRDKFM 192

Query: 160 LYLLYGCGLRISEALSLTPQNIMDD-----QSTLRIQGKGDK------IRIVPLLPSVRK 208
           + LLY  GLRI E LSL   +I  D     Q  L+ +   +        R + +  S+  
Sbjct: 193 IQLLYETGLRIGELLSLYIDDIKYDLTNGHQIILKTRKNKNGARLKSGERKIYISQSLID 252

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRG----KPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
              +Y      +++ + +  LF  IRG     PL+        ++LR+  G+  +   H 
Sbjct: 253 LYDDYLYEVLDEVSTSSEF-LFIKIRGKHVGDPLDYNDVNSIFKRLRKKTGI--NVHPHL 309

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQT 317
           LRH+ AT   +   +++ +Q  LGH  + TT  +Y + + +   +   ++ D  
Sbjct: 310 LRHTHATIFYNKSKNIKQVQERLGHSNIQTTMNLYIHNDDQLIRENWEKVKDSF 363


>gi|57505077|ref|ZP_00371025.1| site-specific recombinase XerC, putative [Campylobacter coli
           RM2228]
 gi|57019162|gb|EAL55874.1| site-specific recombinase XerC, putative [Campylobacter coli
           RM2228]
          Length = 312

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 68/314 (21%), Positives = 123/314 (39%), Gaps = 25/314 (7%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S +L +  + +L++++     S  T   Y     +F+ +   Y +E      I  +  T
Sbjct: 8   ISEDLERWIEAYLKHIQAL-SYSNNTFLLYRRILLEFVEYSLDYQDEMQ----INDIKTT 62

Query: 70  EIRAFISKRRTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL----- 119
            +  F++          K+  ++    L  + SF  ++            +M+ +     
Sbjct: 63  FLVNFLNYLENNSKNGNKLSKKTKITYLRVLTSFFSFISDNNDDLFVFSFDMKKIRFRTE 122

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K    L   LNE + + L + +    + +  +   RNS ++ L+   GLRISEAL++   
Sbjct: 123 KSEEKL-NYLNENEIIRLNNVLEKEKAKKEVYNSFRNSLLIKLMLYGGLRISEALNVKLC 181

Query: 180 NI---MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
           +     D+   + I GKG K +   +        LEY     F  N+     + +   GK
Sbjct: 182 DFEEVDDEILKISIIGKGGKEQFAFIKKEEVDDELEY-----FKENIQDSDYIMQTSTGK 236

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            LN       +  +     +      H LRH+ A  L + G +L  IQ IL H  L+TT 
Sbjct: 237 HLNRSNAFLIVNNIYAKALISKK-GLHLLRHTLAMRLTAKGTNLVVIQKILRHANLNTTT 295

Query: 297 IYTNVNSKNGGDWM 310
           IY    +      +
Sbjct: 296 IYAKATNDTIKAAL 309


>gi|256843226|ref|ZP_05548714.1| site-specific tyrosine recombinase XerS [Lactobacillus crispatus
           125-2-CHN]
 gi|256850416|ref|ZP_05555844.1| site-specific tyrosine recombinase XerS [Lactobacillus crispatus
           MV-1A-US]
 gi|312977456|ref|ZP_07789204.1| site-specific recombinase, phage integrase family [Lactobacillus
           crispatus CTV-05]
 gi|256614646|gb|EEU19847.1| site-specific tyrosine recombinase XerS [Lactobacillus crispatus
           125-2-CHN]
 gi|256712813|gb|EEU27806.1| site-specific tyrosine recombinase XerS [Lactobacillus crispatus
           MV-1A-US]
 gi|310895887|gb|EFQ44953.1| site-specific recombinase, phage integrase family [Lactobacillus
           crispatus CTV-05]
          Length = 347

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 62/328 (18%), Positives = 119/328 (36%), Gaps = 41/328 (12%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYT------EEKITIQTIRQLSYTEIRAFISKR----- 78
             S  T   Y  + R+F  +L             +T  T+  L   +I  +I        
Sbjct: 21  NHSLTTTYQYLTEIRRFFDWLRQENISSASDNAHVTTDTLANLRRNDIMLYIDYLGHTRN 80

Query: 79  -RTQKIGDRSLKRSLSGIKSFLKY-------LKKRKITTESNILNMRNLKKSNSL---PR 127
            + +     ++ RS++ ++S  K+                + +L + +L  + +L     
Sbjct: 81  KQGRLNSPTTINRSINALRSLFKFLTITADNNHGEPYFERNVMLKINSLNDTQTLNYRAH 140

Query: 128 ALN--------EKQALTLVDNVLLHTSHETKWID-----ARNSAILYLLYGCGLRISEAL 174
            L         + + LT +D   ++  ++   I       R+ AI  L+ G G+R+SE  
Sbjct: 141 VLESHMYTGKLKFEFLTFIDQDYINHCNKQAKIGFKQNKERDMAIAALILGTGIRVSECA 200

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
            +   ++    + L +  KG +   VP+       I  Y  +     + + +   F   +
Sbjct: 201 GVDLSDLNLKDAVLDVTRKGGQKDSVPIAEWTLPYIKRYKGIRNERYHADSKQVAFFLTQ 260

Query: 235 GK----PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
                  +     ++ I +     G P   T H LRH+ A+ L     D   +   LG  
Sbjct: 261 WHGQTRRITTNAIEKMINKYSAAFGHP--LTPHKLRHTVASELYEVTKDQVLVAQQLGQK 318

Query: 291 RLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             S T +YT+V+ K     + EI  + H
Sbjct: 319 GTSATDLYTHVDQKKQRAALNEISKKNH 346


>gi|317495237|ref|ZP_07953607.1| phage integrase [Gemella moribillum M424]
 gi|316914659|gb|EFV36135.1| phage integrase [Gemella moribillum M424]
          Length = 350

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 64/339 (18%), Positives = 136/339 (40%), Gaps = 41/339 (12%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQ 65
            E  +  ++++        LS LTL  Y    + FL +       +    + + + T+  
Sbjct: 18  PEFPEYIEDFVD--THYDNLSPLTLHRYLETYKNFLTWTIQETISSAENIKDVKLSTLEN 75

Query: 66  LSYTEIRAFISKRRTQKI-----GDRSLKRSLSGIKSFLKY------------LKKRKIT 108
           ++  E+ ++      +++        ++    + ++S  K+              +R + 
Sbjct: 76  ITKKEMESYFKNLSREEVNGKYRSQTTINNYKAAMRSLYKFLTVTSETEQGHAYFERNVM 135

Query: 109 TESNILNM------RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK-----WIDARNS 157
            +  I  +      R+ K S  +     +++ L  V++    +  +          AR+ 
Sbjct: 136 LKIPISRVKETLSSRSKKISEKIFFDSQDEEFLNFVESEYEQSLSKHAKTFFLRDKARDL 195

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           AIL L    G+R++E  +L  ++I    S + +  KG+K+  V +  S  + I EY+   
Sbjct: 196 AILTLFLKSGIRVNELANLKVKDIDFRNSEINVIRKGNKVDTVIITKSALERISEYFQSL 255

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSN 276
           PF L    +  +F       L+    Q+ + +      +P   + H LRHS+ T L L  
Sbjct: 256 PFSLKR--EDFVFVTKNKTGLSIRAIQKLVMKYTDAFNVP--MSPHKLRHSYGTKLALKT 311

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            G++  I + +GH    T+ +Y N + K     + ++ D
Sbjct: 312 NGNIPIIMTQMGHSNSDTSMLYINESKKIIKQSIDKLDD 350


>gi|288801874|ref|ZP_06407316.1| integrase [Prevotella melaninogenica D18]
 gi|288335916|gb|EFC74349.1| integrase [Prevotella melaninogenica D18]
          Length = 328

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 66/329 (20%), Positives = 121/329 (36%), Gaps = 28/329 (8%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           +   +P +   EL +    + + L+  R LSK T+++++   + F+ FL           
Sbjct: 3   QSRPMPTLT--ELYQSVCEYKEELQG-RTLSKATVRAFKDSYKSFVHFLQVRDRADCMPT 59

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            + +    + R F+   R     + S+   L  +   ++   + +   E     +     
Sbjct: 60  EVDKTLLEDYRLFM--LRDLGNKESSVGNRLRHLHQVIRKALQERYVREDPFELID---- 113

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              +     E+ ALT  D   L      +  D     I  L    GL  S+   L   ++
Sbjct: 114 ---IETPTYERNALTADDLQKLLAYRPHRSTDNHCRLIFLLGCFTGLAFSDLKKLRMDDV 170

Query: 182 M---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
               D +  + +     + R +  L  V + IL        +     + P          
Sbjct: 171 YTFGDGRRYISLCRTKTQNRSIVPLLPVAEKILAIVSHGRREGLFFREFP---------- 220

Query: 239 NPGVFQRYIRQLRRYLGLPLS--TTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTT 295
           +   F R I+++    GL      T+HT RH+FAT   L NG  + ++  +LGH  +STT
Sbjct: 221 SNSNFNRTIQEICIKAGLLPHTQATSHTARHTFATTICLENGLPIETVSKMLGHRFISTT 280

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           +IY  V        M  +    H  + +K
Sbjct: 281 EIYARVTKSKIAKEMQPLMGSEHTRVLRK 309


>gi|160888483|ref|ZP_02069486.1| hypothetical protein BACUNI_00900 [Bacteroides uniformis ATCC 8492]
 gi|298374441|ref|ZP_06984399.1| integrase [Bacteroides sp. 3_1_19]
 gi|156862160|gb|EDO55591.1| hypothetical protein BACUNI_00900 [Bacteroides uniformis ATCC 8492]
 gi|298268809|gb|EFI10464.1| integrase [Bacteroides sp. 3_1_19]
          Length = 409

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 121/292 (41%), Gaps = 25/292 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSLKR 90
           +  T+ +Y    R    F+   TE K++     QL+   IR +       +++   +++ 
Sbjct: 130 APTTMSTYVYTRRTLAEFIK--TEFKVSDLAFGQLNEQFIRDYQDFCLEKKRLAMETVRH 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            LS +K   +   K   + + +  + +  K+  + P+AL+ +    L D  +     E +
Sbjct: 188 YLSILKKICRIAYKEGHSEKYHFCHFKLPKQKETTPKALSRENFEKLRDLEI----PEKR 243

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRI---QGKGDKIRIVPLLPSV 206
                   +       G   ++A+S+T +N   DD+ +L +   + K D +  V LLP  
Sbjct: 244 RSHVITRDLFLFACYTGTAYADAVSITRENLFRDDEGSLWLKYRRKKTDYLGRVKLLPEA 303

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              I +Y D        + +  LF      P +    +  ++ LR   GL      H  R
Sbjct: 304 LALIEKYRD--------DTRTTLFP-----PQDYHTLRANMKSLRLMAGLSQDLVYHMGR 350

Query: 267 HSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           HSFA+ + L  G  + +I  +LGH  + TTQIY  V  K   + M    + T
Sbjct: 351 HSFASLVTLEEGVPIETISKMLGHSNIKTTQIYARVTPKRLFEDMDRFVEAT 402


>gi|186474625|ref|YP_001863596.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198584|gb|ACC76546.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 405

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 140/301 (46%), Gaps = 20/301 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           R  +LQ+L   RG +  T   ++   + FL          +  +T++ L  T++  +I +
Sbjct: 110 RSQYLQHLHELRGFAVSTAAQHDSTLKDFLRRAV------LPDRTLQTLGATDVENYI-R 162

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQAL 135
            +++++  ++L+  ++ +++FL+Y + R   T   +  +   +  ++   PRAL+ K   
Sbjct: 163 LKSREVTRQTLQHVIAHLRAFLRYCEDRGDITLG-LHCIDTPRTYRAELPPRALDWKLVP 221

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            LV++V  H+         R+ A+L+L+   GLR SE  +LT  +I  +  TL +Q +  
Sbjct: 222 KLVNSVDRHS-----RTGWRDHAVLHLMAYYGLRASEVAALTLSSINWESRTLHVQQRK- 275

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK--PLNPGVFQRYIRQLRRY 253
             R V +LP   + I           + +    LF   R    PL             R 
Sbjct: 276 -TRSVLVLPLADRTINLLRRYLRCGRSGSDCPALFLRARSPVGPLTHYGVVDIFCTRARL 334

Query: 254 LGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            GLP+ +++++ LRH+FA  LL  G   ++I  ILGH  L +T +Y  ++        ++
Sbjct: 335 SGLPITNSSSYALRHAFAMRLLDRGVGTKAIGDILGHRSLESTCVYLRLDIAMLRSVALQ 394

Query: 313 I 313
           +
Sbjct: 395 V 395


>gi|199599257|ref|ZP_03212658.1| site-specific tyrosine recombinase XerS [Lactobacillus rhamnosus
           HN001]
 gi|258508420|ref|YP_003171171.1| site-specific tyrosine recombinase XerS [Lactobacillus rhamnosus
           GG]
 gi|199589869|gb|EDY97974.1| site-specific tyrosine recombinase XerS [Lactobacillus rhamnosus
           HN001]
 gi|257148347|emb|CAR87320.1| Tyrosine recombinase xerC [Lactobacillus rhamnosus GG]
          Length = 370

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 68/372 (18%), Positives = 148/372 (39%), Gaps = 48/372 (12%)

Query: 1   MEGNNLPEIVSFELLKERQNWL-QNLEIERGL--SKLTLQSYECDTRQFLIFL------A 51
           M   N P+++   +L    +++      ++ +  +  TL  Y    ++FL +L       
Sbjct: 1   MSTQNYPKLIQA-MLPSLPDYIQDYYHSQKAIPIADSTLYQYLHFYQEFLHWLISSRVTD 59

Query: 52  FYTEEKITIQTIRQLSYTEIRAFISKRRTQ--------KIGDRSLKRSLSGIKSFLKYLK 103
             + + + ++T+ +LS  + +AF++    +        ++  RS+   L GIK+  ++L 
Sbjct: 60  AVSPQNVPLKTLERLSLRDAQAFVAYLLERPSKTHPNKRMTRRSVALRLVGIKALYRFLT 119

Query: 104 KR-------------------KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           +                    K+ T +     RN K    L     + + L  +D     
Sbjct: 120 EESEPNADGEPYFYRNVWNKVKLKTHAETTTYRNHKLQEMLFVDGEDARFLQWLDRQYAQ 179

Query: 145 TSHETKWID-----ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                          RN AI+ LL+G G+R+SE +++  +++  D+ T+++  KG+    
Sbjct: 180 QLPSKPRAYFEATKERNLAIIALLFGSGVRVSELVNMNLEDLNMDRHTVQVVRKGNFQDR 239

Query: 200 VPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFR---GIRGKPLNPGVFQRYIRQLRRYLG 255
           V     +   +  Y         +     PLF    G     +     + + ++     G
Sbjct: 240 VNFADWIDPYLTAYLKSQTAMIGHQKPTSPLFVTQIGQTVNRIRQNTIEAFFKRYTTAYG 299

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
               +T H  RH+  T++ +   D++ +   LG    S T +Y N++ K+G   + E+ +
Sbjct: 300 --RPSTPHKARHTLGTNIYTVTKDVQQVADQLGQTTTSATDLYINLSDKSGKAALREVSE 357

Query: 316 QTHPSITQKDKK 327
               ++ Q  ++
Sbjct: 358 TAAKAVDQHPQQ 369


>gi|187928829|ref|YP_001899316.1| integrase family protein [Ralstonia pickettii 12J]
 gi|187725719|gb|ACD26884.1| integrase family protein [Ralstonia pickettii 12J]
          Length = 442

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 70/331 (21%), Positives = 128/331 (38%), Gaps = 42/331 (12%)

Query: 16  KERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           KE +  +    IERG  LS LT +    D   +  FL   T  +  I   R  S  + R 
Sbjct: 121 KEAERLILWAIIERGRALSSLTTE----DAIAYRGFLRRPTPRERWIGPPRARSAPDWRP 176

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F      + +  RS   +L+ + +  ++L +++    +    ++   ++   P  L+  +
Sbjct: 177 F-----ARGLSARSTAYALTVLGAMFRWLIEQRYVLANPFAGIKVRGRTRVAP--LDTTR 229

Query: 134 ALTLVDNVLLHT-SHETKWIDARN-------SAILYLLYGCGLRISEALSLTPQNIMDDQ 185
             T  + +L+ T +   +W    +         IL   Y  GLR SE +  T  +I  D+
Sbjct: 230 GFTEGEWLLVRTIADGLEWSYGWDVPAAQRLRFILDFAYATGLRASELVGATLGDIRTDE 289

Query: 186 S---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLN 239
                L + GKG +   V L P  R A+ ++       +     + + PL   +    + 
Sbjct: 290 RNDRWLHLVGKGGRPGKVALPPLARTALDQHLVQRGLPVTPARWDPRTPLIASLEQDSVT 349

Query: 240 PGVFQRYIRQLRRYLGLPLST---------------TAHTLRHSFATHLLSNGGDLRSIQ 284
                R    +RR+ G                    + H  RH+ ATH L+ G +L +++
Sbjct: 350 NITGTRLWMVMRRFFGQAADIIAGDHPTLAEKLRRASPHWTRHTHATHALARGAELTTVR 409

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
             L H  ++TT IY   +       + + + 
Sbjct: 410 DNLRHASVATTSIYLQSDEVKRAHQIGQAFA 440


>gi|330824742|ref|YP_004388045.1| integrase family protein [Alicycliphilus denitrificans K601]
 gi|329310114|gb|AEB84529.1| integrase family protein [Alicycliphilus denitrificans K601]
          Length = 419

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 123/294 (41%), Gaps = 17/294 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   L  E+GL + ++ +Y    R F  +LA          ++ +L+   I  FI+  R 
Sbjct: 131 FFPFLLKEKGLRQTSIHNYTFTLRPFDSYLAQAGI------SLDKLTPACITEFIND-RA 183

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALTLV 138
           + +    +  +   ++ FL+YL +  I     + ++   +  +  S+PRA+       L+
Sbjct: 184 KTLHKSGMLNTAEALRVFLRYLHREGIIANDLVRSVPRGRVYRQASIPRAIGWADVERLL 243

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197
                 +      +  R+ AIL LL   GLR  E ++L   ++      + I   KG   
Sbjct: 244 -----ASIDRRSDLGKRDYAILTLLTSYGLRAREIVALCLDDLDWAHGQIGIPMRKGGHS 298

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
              PL  +V +AI+ Y  +   D++ + ++ L       P+N       +    R +G+ 
Sbjct: 299 TRYPLSAAVGEAIIAYLHVRRTDID-DRRIFLTVRSPYTPMNHWTVSSMVAGHLRSIGIQ 357

Query: 258 L-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           +    +HTLRHS   HL+      + I   +GH   ++T +Y  V      + +
Sbjct: 358 VARAGSHTLRHSCVQHLVEADLPFKVIGDYVGHRHPASTLVYGKVAVHKLREMV 411


>gi|313899314|ref|ZP_07832827.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312955887|gb|EFR37542.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 396

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 56/325 (17%), Positives = 123/325 (37%), Gaps = 40/325 (12%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +   + + + L+ +R     T  +Y          L F  ++K   ++I  +  ++++A+
Sbjct: 82  MTVYELFQKYLKQQRNTRASTQNTYHY-------LLEFLKKDKFGARSIDGIKISDVKAW 134

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLKKSNSLPR-ALNEK 132
           + + R   +   ++      +K   K         ++    ++ ++ K+++  R AL ++
Sbjct: 135 LLELRDNGLAYGTVLFYKRALKPAFKMALHDDCIIKNPFDFSLSSVMKNDTQARQALTKE 194

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q   L+  +     +        +  I+  L   GLRISE   LT +++      + I  
Sbjct: 195 QEEKLLSFMRSDVCYRK----YYDEVII--LLRTGLRISEFCGLTVKDLDFTNRVINIDH 248

Query: 193 K----------------GDKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGI 233
           +                 + IR +P+   V +A            NL        LF   
Sbjct: 249 QLIKLSKTGYVVQPPKSENGIRQIPMSDEVYQAFQNILKHRRKPKNLVIDGYSDFLFINR 308

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLP-----LSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
            G P     ++   R+L               T H +RH+F T L + G + +++Q ++G
Sbjct: 309 NGNPQVAVNYETVFRKLVDKYNSKYEEPLPKITPHVMRHTFCTRLANAGMNPKALQYVMG 368

Query: 289 HFRLSTT-QIYTNVNSKNGGDWMME 312
           H  ++ T  +YT+ + +     +  
Sbjct: 369 HSNITITLNLYTHASLETVKSELQR 393


>gi|134281384|ref|ZP_01768092.1| integrase/recombinase XerD, putative [Burkholderia pseudomallei
           305]
 gi|134247051|gb|EBA47137.1| integrase/recombinase XerD, putative [Burkholderia pseudomallei
           305]
          Length = 318

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 59/319 (18%), Positives = 123/319 (38%), Gaps = 28/319 (8%)

Query: 6   LPEIVSFELLKERQNWLQNLE-IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           +P +V+    +    +L+      R     T ++Y      F  + A      + + +I 
Sbjct: 12  MPALVTAAGERAGVRFLEFFASAIRN--PHTRRAYARAAEDFFAWCA-----NMGVTSIV 64

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            +    + A++ + +TQ +   ++K+ L+ I+    +L   ++   +   ++R    S+ 
Sbjct: 65  AVQPLHVAAWV-ELQTQTLSAPTVKQRLAAIRHLFDWLVTGQVVPVNPAASVRGPSHSSK 123

Query: 125 LPR--ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           + +   L+  +A  L+D + + T         R+ A++ L+     RI  AL++   ++ 
Sbjct: 124 VGKTPVLDATEARHLLDAIDVSTPA-----GLRDRALIALMVFSFARIGAALAMRVDDVY 178

Query: 183 DDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-------R 234
                L ++  +    R         +A L  Y       N   + PLFR I        
Sbjct: 179 VQNRRLWVRLREKGGKRHEMPCHHTLEAYLHAYLDGTGLAN-ESKGPLFRTIARGTGQLS 237

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
             PL        +R+     G+      HT R +  T  L NGG + +  ++  H    T
Sbjct: 238 TTPLPQANAYAMVRRRAAAAGIATKIGNHTFRATGITAYLKNGGTIENAAAMANHASTRT 297

Query: 295 TQIYTNVNSKNGGDWMMEI 313
           TQ+Y   + +     + E+
Sbjct: 298 TQLY---DRRRDDISLDEV 313


>gi|319654079|ref|ZP_08008171.1| hypothetical protein HMPREF1013_04791 [Bacillus sp. 2_A_57_CT2]
 gi|317394272|gb|EFV75018.1| hypothetical protein HMPREF1013_04791 [Bacillus sp. 2_A_57_CT2]
          Length = 368

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 61/296 (20%), Positives = 108/296 (36%), Gaps = 40/296 (13%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           ++ T + Y  D +QFL ++      +    ++  L+   +  +       K    +L R 
Sbjct: 63  AESTKKEYFRDLKQFLEYI-----NEKGFSSLHSLNPEHLLQYQRYL-ENKYKKTTLLRK 116

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT-LVDNVLLHTSHETK 150
            S IK F +YL  ++I  +     M+  K +       +E+     L D+ +       K
Sbjct: 117 SSVIKHFFRYLANKEILLQDITRQMKRPKVN-------SEELVNRDLFDHEVKQILAYFK 169

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMD----DQSTLRIQGKGDKIRIVPLLPSV 206
             D     + YLL   G+RI+E  +    N       D   L++ GKG K+R + +   V
Sbjct: 170 KTDWFAYTLFYLLVSTGMRINELATAKWSNFRYEPSVDHFFLKVMGKGGKVRDIIIFNDV 229

Query: 207 RKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYL---------- 254
            + + E       +  +        F    GK  +         ++              
Sbjct: 230 LEVVKENRRRKSLNTQIGTFCGTAFFPKANGKHYHTTYLSNEFTRVVNTAPLDFIQARFE 289

Query: 255 ----------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                      +    T HT RH  A + + NG D +++Q +LGH  L TT+ Y  
Sbjct: 290 REKEALEGGQSIKYRITPHTCRHYTAAYYMDNGIDPKALQDMLGHSSLMTTERYLR 345


>gi|184155416|ref|YP_001843756.1| site-specific tyrosine recombinase XerS [Lactobacillus fermentum
           IFO 3956]
 gi|183226760|dbj|BAG27276.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
          Length = 359

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 70/352 (19%), Positives = 126/352 (35%), Gaps = 42/352 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK--- 57
           ME      ++  EL K+  +++   ++    S  T   Y  + R+F  +L      K   
Sbjct: 1   METQRYLNLIDREL-KQLPDFVSEYQLGTRHSLTTSYQYLTELRRFFTWLRKTGLSKATD 59

Query: 58  ---ITIQTIRQLSYTEIRAFISKRRTQKI------GDRSLKRSLSGIKSFLKY------- 101
              +T   + +L   +I  FI      K          ++ RS++ ++S  KY       
Sbjct: 60  NAHVTTAELEKLRRNDIIQFIDDLAHTKNAQQRLNSPTTINRSINALRSLFKYLTVTADI 119

Query: 102 LKKRKITTESNILNMRNLKKSNSL---PRALNEK--------QALTLVDNVLLHTSHETK 150
              +     + +L + +L  + +L      L  K          LT +D           
Sbjct: 120 NGGQPYFERNVMLKIDSLNDTKTLNYRAHVLEAKMYTGQLKYDFLTFLDQEYEQKCDPRA 179

Query: 151 WID-----ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
                    R+ A++ L+ G G+R+SE   +   ++     TL +  KG +   VP+ P 
Sbjct: 180 RTAFEKNKERDIALVALILGTGIRVSETAGVDVNDLDLKGQTLEVTRKGGQRDAVPIAPW 239

Query: 206 VRKAILEYYDLCPFDLNL-NIQLPLFRGIRG---KPLNPGVFQRYIRQLRRYLGLPLSTT 261
               I  Y  +          +   F        K ++    +R + +  R  G P   T
Sbjct: 240 TMPYIQAYATIRRQRYQPEKTERAFFLTHYHGQTKRISVNGIERLVSKYSRAFGHP--LT 297

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            H LRH+ A+ L     D   +   LG    S T +YT+V+       + E+
Sbjct: 298 PHKLRHTLASELYDVTKDQVLVAQQLGQKGTSATDLYTHVDQTKQRQALDEV 349


>gi|115374267|ref|ZP_01461552.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|310818193|ref|YP_003950551.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115368688|gb|EAU67638.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309391265|gb|ADO68724.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 402

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 109/262 (41%), Gaps = 44/262 (16%)

Query: 72  RAFISKRRT---QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR- 127
           RA I KR+    + +  +S+   L+ +   L   +++++  ++       +K    LP+ 
Sbjct: 146 RAAIRKRKDTEAKPLSLKSINNVLTVVSRLLAVAEEQRVIPQAP-----RVKLFKKLPKP 200

Query: 128 ---ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
               L+ ++   L+       + E +W      A+L +    GLR  E + L   ++   
Sbjct: 201 PFDFLSFEEVERLI------AASEPEW-----RALLLVALKTGLRQGELIGLQWADLDLQ 249

Query: 185 QSTLRIQG----------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +  L ++           KG + R V L  S  +A+  +  L            +F    
Sbjct: 250 RGKLHVRRTIWRGVVGLPKGGRERTVDLPASAGEALKGHRHLRGP--------YVFCQPD 301

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPL---STTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           GK L PG+ +  + +  R  G+         H LRH++ +HL   G  L++IQ ++GH  
Sbjct: 302 GKALTPGLLKHPLLRALRMAGVSREQGGIGWHDLRHTYGSHLAMRGVPLKAIQELMGHVT 361

Query: 292 LSTTQIYTNVNSKNGGDWMMEI 313
           +  T+ Y +++ +     + ++
Sbjct: 362 IEMTERYAHLSPEVRASAVQQL 383


>gi|22537138|ref|NP_687989.1| site-specific tyrosine recombinase XerS [Streptococcus agalactiae
           2603V/R]
 gi|25011018|ref|NP_735413.1| site-specific tyrosine recombinase XerS [Streptococcus agalactiae
           NEM316]
 gi|76788700|ref|YP_329694.1| site-specific tyrosine recombinase XerS [Streptococcus agalactiae
           A909]
 gi|76797778|ref|ZP_00780044.1| Tyrosine recombinase xerC [Streptococcus agalactiae 18RS21]
 gi|77405708|ref|ZP_00782795.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae H36B]
 gi|77413630|ref|ZP_00789816.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 515]
 gi|54039883|sp|P67633|XERS_STRA5 RecName: Full=Tyrosine recombinase xerS
 gi|54042780|sp|P67632|XERS_STRA3 RecName: Full=Tyrosine recombinase xerS
 gi|123601858|sp|Q3K1A9|XERS_STRA1 RecName: Full=Tyrosine recombinase xerS
 gi|22534000|gb|AAM99861.1|AE014236_15 site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 2603V/R]
 gi|23095418|emb|CAD46624.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563757|gb|ABA46341.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae A909]
 gi|76586854|gb|EAO63346.1| Tyrosine recombinase xerC [Streptococcus agalactiae 18RS21]
 gi|77160339|gb|EAO71464.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 515]
 gi|77175704|gb|EAO78486.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae H36B]
          Length = 356

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 65/353 (18%), Positives = 133/353 (37%), Gaps = 50/353 (14%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYTEEK 57
           + L EI+ + +L+  Q+ L         S  TL  Y  + R+FL +L        +   +
Sbjct: 11  DELKEIMPWYVLEYYQSKLSVP-----YSFTTLYEYLKEYRRFLEWLLDSGVANCHHIAE 65

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQ----------KIGDRSLKRSLSGIKSFLKYLKKRKI 107
           I +  +  L+  ++ AFI   R +           +   ++ R+LS + S  KYL +   
Sbjct: 66  IELSVLENLTKKDMEAFILYLRERPLLNANTRQNGVSQTTINRTLSALSSLFKYLTEEVE 125

Query: 108 TTESNILNMRNL---------------KKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +      RN+               +  N   +     + +  ++ +     ++    
Sbjct: 126 NADGEPYFYRNVMKKVSTKKKKETLASRAENIKQKLFLGNETIEFLEYIDCEYQNKLSKR 185

Query: 153 DA--------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
                     R+ AI+ LL   G+R+SEA++L  ++I  +   + +  KG K   V +  
Sbjct: 186 ALAFFNKNKERDLAIIALLLASGVRLSEAVNLDLKDINLNVMVIDVTRKGGKRDSVNVAS 245

Query: 205 SVRKAILEYYDLCPFDLNL-NIQLPLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLST 260
             +  +  Y D+        N  + LF          ++    ++ + +  +     +  
Sbjct: 246 FAKPYLANYLDIRKNRYKAENQDIALFLSEYRGVPNRIDASSVEKMVAKYSQ--DFKVRV 303

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           T H LRH+ AT L         +   LGH     T +YT++ +    + + ++
Sbjct: 304 TPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL 356


>gi|322383160|ref|ZP_08056982.1| integrase-like protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321152703|gb|EFX45334.1| integrase-like protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 360

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 67/323 (20%), Positives = 117/323 (36%), Gaps = 45/323 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQL---SYTEIRAFISKRRTQ 81
           LS  TL  Y  D   F  ++             I ++ + +L   S    +AF++  +  
Sbjct: 34  LSPSTLLEYVRDYETFFGWMMAEGLTEAEQMPGIPLEDLERLHTDSIDNFKAFLATHKNH 93

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA------------- 128
                ++ R LS ++S   YL +         L  RN+     + R              
Sbjct: 94  LNKKITITRKLSSLRSLFHYLSQIAEDENFYPLLKRNVMAKIEIKRTNRSKDIASKLEGK 153

Query: 129 -LNEKQALTLVDNVLLHTSHE----------TKWIDARNSAILYLLYGCGLRISEALSLT 177
            L E++ +  +  +     H+           K    R++ I+ L+   GLR+SE ++LT
Sbjct: 154 LLQEEEIIEFIHYIREGYEHDVADNKQALYAYKQNHVRDACIVSLILHSGLRVSEVVNLT 213

Query: 178 PQNIMDDQSTLRIQGKGDKI----RIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRG 232
             ++   + T+ +  KG+        V       + +  Y ++          +  LF  
Sbjct: 214 LDDLDIKKKTIYVFRKGNNDGSFKTRVYFRQEAMEDLSRYLEIRETRYRPPKKEKALFLT 273

Query: 233 IRGKP-----LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           I         +     Q  + +  +  G P   + H LRHSFAT       DL   Q  L
Sbjct: 274 IPNGRSEGKMMTKRAMQEMVLKYAKRFGKPY-LSVHKLRHSFATDYYLQN-DLYKTQEQL 331

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH    TTQIY ++  K   + +
Sbjct: 332 GHASSDTTQIYAHLTDKTMEEAI 354


>gi|288927978|ref|ZP_06421825.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330812|gb|EFC69396.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 431

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 101/278 (36%), Gaps = 15/278 (5%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           R    F+     + I I  I +  + E R ++ KR    +   ++   L  +   +    
Sbjct: 136 RNLHEFVKDKGVQDILIGAITEDLFEEYRFYLKKR---GLKGTTINNYLCWLSRLMYRAV 192

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
            ++I   +   N +  K+   + R L + +   LV+  +     E          +    
Sbjct: 193 SQRIIRCNPFDNAKYEKEDRKI-RFLQKSEVAKLVEMKMNDRESEQA------RLMFVFA 245

Query: 164 YGCGLRISEALSLTPQNIM---DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
              G+ I++   L  ++I    D Q  +R  + K     +VPL P     I         
Sbjct: 246 CFTGMAIADMERLQYKHIQTSADGQRYIRKERQKTKVEFVVPLHPIAEAIINHCRKEQEN 305

Query: 220 DLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
           +            +      +  V  + +  + +  G+    + H  RH+F T  LS G 
Sbjct: 306 NEEWQTVKEKGDSLVFHRGCSRSVMGKNLCIVGKACGISQRLSYHMARHTFGTMCLSAGI 365

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            + SI  ++GH  +S+TQIY  V  +   + M  +  +
Sbjct: 366 PIESIAKMMGHASISSTQIYAQVTDRKISEDMDRLIAK 403


>gi|292656400|ref|YP_003536297.1| XerC/D-like integrase [Haloferax volcanii DS2]
 gi|291370519|gb|ADE02746.1| XerC/D-like integrase [Haloferax volcanii DS2]
          Length = 310

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 59/292 (20%), Positives = 110/292 (37%), Gaps = 35/292 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G S+ TL +Y    ++F         E+             I  ++ +   + +   + +
Sbjct: 28  GRSERTLNAYSRILKKFY-------HEEFPELRPEDTEVFHIEDYVMRLAQRDLSQNTKR 80

Query: 90  RSLSGIKSFLKYLKKR---KITTESNILNM--RNLKKSNSLPRALNEKQALTLVDNVLLH 144
           R L  + +F  Y  KR   +  T +    +     K+    P     +    ++ N+   
Sbjct: 81  RYLESLSAFFSYAMKRPRFEKITGNPAAVVLEEIPKQVRDRPDCATWENGRQIIHNI--- 137

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLL 203
                   D R+  +  +L   G R++EAL +   ++M ++  +R++  KG K  +VP+ 
Sbjct: 138 -------SDPRDKTVATVLAKTGCRLTEALEIQVDDLMLEEGFIRLRKRKGGKQTVVPID 190

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL------- 256
               KAI  +  +     N      LF  IRG+ ++    QR +++     G+       
Sbjct: 191 QETIKAIQRFQFIR----NGRGTDYLFVSIRGERVSKTSVQRAVKKAAEEAGIMEPGEDR 246

Query: 257 -PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                T HT R  F T + + G     ++ I G     T  IYT V+     
Sbjct: 247 FHKKFTPHTYRTVFTTLMRNQGMPDHILRYIRGDSNDETMDIYTRVDRSQAR 298


>gi|239908080|ref|YP_002954821.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239797946|dbj|BAH76935.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 410

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 102/280 (36%), Gaps = 26/280 (9%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102
            R+    +  +    +    ++ +    ++  +          RS++   +  ++   + 
Sbjct: 129 IRKTEEHVKNWLGPVVGRLPLKNIRQMHMQKVLLAMANAGRSPRSIQYVFATFRAIWNHA 188

Query: 103 KKRKITT-ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
           +       +S    +   K +N   R L+  +A  L+  +   +          + A+L 
Sbjct: 189 RNNGFVQVQSPTKGVALPKVNNERKRYLSRPEADALLAELATRSPQT------HDLALLS 242

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           L    G+R SE   LT   +  D+  + I   KG+K R +P+   V++           +
Sbjct: 243 L--DTGMRFSEVTGLTWGCVDLDKGRIDILNAKGEKDRAIPMTARVKELFESMTPGASNE 300

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-------TAHTLRHSFATHL 273
           L       +F+   G  +  G   +        LGL           + H LRH+ A+ L
Sbjct: 301 L-------IFKSRVGGQI--GKISKSFDLAVEKLGLNKDVDDPKQIFSFHCLRHTCASWL 351

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +  G DL  +Q  LGH     TQ Y++V   +  +    +
Sbjct: 352 IEAGTDLYVVQKTLGHSTPVVTQRYSHVADASIANAFRAM 391


>gi|126659715|ref|ZP_01730843.1| Tn554-related, transposase A [Cyanothece sp. CCY0110]
 gi|126618963|gb|EAZ89704.1| Tn554-related, transposase A [Cyanothece sp. CCY0110]
          Length = 370

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 63/356 (17%), Positives = 128/356 (35%), Gaps = 78/356 (21%)

Query: 16  KERQNWLQNLEIERG-LSKLTLQSYECDTRQFLIFLAFYT--EEKITIQTIRQ------- 65
           +  Q +L      +G L+  T+ +Y C    F  +L + +   +++ +  +         
Sbjct: 29  EPIQRYLNYCR--KGQLAFNTVNTYACRLLDFWQWLEYKSLDWQEVGLNELADFVNWYLL 86

Query: 66  -----LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--- 117
                +   ++R  +SKR       R++  +++ ++ F ++        E +   +    
Sbjct: 87  GGEVEVISEDVREIMSKR-----SPRTVNLAITAVQGFYEFHTVEGRVDEKHFTKLAHGW 141

Query: 118 ---------------------NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
                                 +K+  + P  L ++Q   L D               R+
Sbjct: 142 GKRGGFLRGIVKSTPDKRKRIKVKEPKNFPGCLTDEQVTQLADAC----------YSYRD 191

Query: 157 SAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQGK---------GDKIRIVPLLPS 205
             I+ LL   G+R  E L L   +    D +  +RI  +             R +P++ +
Sbjct: 192 RLIVMLLRETGVRRGELLGLHLVDVADFDSRGRIRIVRRDNNPNSATAKGTEREIPIIHN 251

Query: 206 --------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
                       + EY        +  + + L     GKP++         QL    G+ 
Sbjct: 252 RDAVKETFHAYLLEEYPPEAEKLEHGMLFVNLEGEYIGKPMSSARLNSLFYQLEERTGI- 310

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMME 312
                H  RH+FAT +L  G   + +Q +LGH  ++TT+ IY++V  +   D  ++
Sbjct: 311 -KAHPHLFRHTFATRMLQAGYLDQYVQQLLGHKSIATTKDIYSHVLDEMSLDAYLQ 365


>gi|326943717|gb|AEA19610.1| Integrase [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 368

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 70/361 (19%), Positives = 129/361 (35%), Gaps = 49/361 (13%)

Query: 10  VSFELLKERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL-------------AFYT 54
              E  KE+  W  ++ +E +  LS  TL  Y  +   FL +L                 
Sbjct: 11  ARVERHKEKMPWYIIEYIEEKTNLSPATLYGYLIEYEMFLHWLISSRLVFVNGEVVTVTK 70

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY-------LKKRKI 107
             ++ I+T+  L   +++ F S    Q    +++ R+ S +KS   Y             
Sbjct: 71  LHEVPIETLEHLPLKQVKRFKSYLERQGNKTKAIIRTFSALKSLFNYLTKNTEDDNGECY 130

Query: 108 TTESNILNMRNLKKSN--------------------SLPRALNEKQALTLVDNVLLHTSH 147
              + +  M   K+                         R L+  +   ++         
Sbjct: 131 FYRNVMAKMEIHKEKIDASARAKEISEVIFHNNDDIKFMRFLS-NEYEQMLKENAPGKLR 189

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
             K    R+ AIL L+ G GLR+SE  SLT  +I      +++  KGDK   +    +  
Sbjct: 190 FFKRDRERDIAILSLILGTGLRVSETASLTISSINFRTRYIKVVRKGDKKSSILATQTAL 249

Query: 208 KAILEYYDLCPFDLN-LNIQLPLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
             + EY  +        + +  LF          ++    Q+   +  R        + H
Sbjct: 250 DDVQEYLKVRAARYKCPDAEDILFVTNYKGSYAQISVNAIQKLTEKYTRA--FDEKKSPH 307

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            LRH++AT+  +   DL  + + +GH  + TT +YTN++       +  +  +      +
Sbjct: 308 KLRHTYATNHYNENKDLVLLANQMGHNSMETTSLYTNIDDTKRRAAIERLEQRQFEDTKE 367

Query: 324 K 324
           K
Sbjct: 368 K 368


>gi|77408588|ref|ZP_00785323.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae COH1]
 gi|77172781|gb|EAO75915.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae COH1]
          Length = 356

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 65/353 (18%), Positives = 133/353 (37%), Gaps = 50/353 (14%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYTEEK 57
           + L EI+ + +L+  Q+ L         S  TL  Y  + R+FL +L        +   +
Sbjct: 11  DELKEIMPWYVLEYYQSKLSVP-----YSFTTLYEYLKEYRRFLEWLLDSGVANCHHIAE 65

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQ----------KIGDRSLKRSLSGIKSFLKYLKKRKI 107
           I +  +  L+  ++ AFI   R +           +   ++ R+LS + S  KYL +   
Sbjct: 66  IELSVLENLTKKDMEAFILYLRERPLLNANTRQNGVSQTTINRTLSALSSLFKYLTEEVE 125

Query: 108 TTESNILNMRNL---------------KKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +      RN+               +  N   +     + +  ++ +     ++    
Sbjct: 126 NADGEPYFYRNVMKKVSTKKKKETLASRAENIKQKLFLGNETIEFLEYIDCEYQNKLSKR 185

Query: 153 DA--------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
                     R+ AI+ LL   G+R+SEA++L  ++I  +   + +  KG K   V +  
Sbjct: 186 ALAFFNKNKERDLAIIALLLASGVRLSEAVNLDLKDINLNVMVIDVTRKGGKRDSVNVAS 245

Query: 205 SVRKAILEYYDLCPFDLNL-NIQLPLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLST 260
             +  +  Y D+        N  + LF          ++    ++ + +  +     +  
Sbjct: 246 FAKPYLANYLDIRKNRYKAENQDIALFLSEYRGVPNRIDSSSVEKMVAKYSQ--DFKVRV 303

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           T H LRH+ AT L         +   LGH     T +YT++ +    + + ++
Sbjct: 304 TPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL 356


>gi|261402720|ref|YP_003246944.1| integrase family protein [Methanocaldococcus vulcanius M7]
 gi|261369713|gb|ACX72462.1| integrase family protein [Methanocaldococcus vulcanius M7]
          Length = 323

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/313 (20%), Positives = 132/313 (42%), Gaps = 25/313 (7%)

Query: 16  KERQNWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
            + + WL   + ER   G  + T+++   D  +  +FL F        ++  ++  ++  
Sbjct: 23  DDIKKWLDKFKEERLFDGRKESTIKN---DLTRLKVFLDFCYNRL--GKSPDEMETSDFV 77

Query: 73  AFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
            F +   + +K+   + KR    +K F K ++ +     +        +K  +     + 
Sbjct: 78  KFFNYLEKERKLSKNTQKRYYDLLKVFYKLMRLKNF---NEFAEESKERKRFACIEIRHY 134

Query: 132 KQALT-LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
                 +++ +L            R++ I+ LL+  G R+SE L+L  +++  ++  +RI
Sbjct: 135 DAVDAEILNEILRKIVESNSRTRMRDALIVRLLWDTGARVSEILNLRYKDVDFNEGIIRI 194

Query: 191 -QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQR 245
              K  + R V       + +  Y   C F++    +  LF+  RG  +       VF++
Sbjct: 195 TNTKNREERKVVCASETLELLRHY---CQFNIRQGPEDYLFQNNRGGRVRKDWISEVFRK 251

Query: 246 YIRQLRRYLGLP--LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            + +L++   +P       H+LRH  A  LL  G  L  ++  LGH  L  T  Y++  S
Sbjct: 252 AVDELKKEGKIPPNKRIVIHSLRHGRAVDLLEKGLPLDVVKEYLGHRSLEVTLFYSH--S 309

Query: 304 KNGGDWMMEIYDQ 316
           K   + +++I  +
Sbjct: 310 KERTEKLLKIIRK 322


>gi|84517237|ref|ZP_01004592.1| Phage integrase [Loktanella vestfoldensis SKA53]
 gi|84508912|gb|EAQ05374.1| Phage integrase [Loktanella vestfoldensis SKA53]
          Length = 401

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 89/257 (34%), Gaps = 22/257 (8%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI----TTESNI 113
              + + +++  ++               S+ R L  ++        R        E+  
Sbjct: 136 FGKKHLDEITTEDVLNMQQAGLKAGAAPGSVNRRLILLRYMFN-TAWRDWKIAGVKENPT 194

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
             +R LK++N   R +   +   L   +           +     I+  L   G R +E 
Sbjct: 195 HGVRLLKENNKKERYVRADEMARLYAEICSSQ-------NTMLKHIVAFLVLTGARRNEV 247

Query: 174 LSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
           L  T  +I       RI   K    R +PL       + +          ++    +F  
Sbjct: 248 LHATWHDINMTTGKWRIPDTKSGYARHLPLNDGAMAVLHQMR-------GVSRSHFIFGN 300

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
            +                R+  GLP     H LRH+FA+ L++NG  +  +Q +LGH ++
Sbjct: 301 PKTGKAYVH-IWYAWNTARKKAGLP-DVRMHDLRHTFASLLINNGRSIYEVQKLLGHTQI 358

Query: 293 STTQIYTNVNSKNGGDW 309
            TTQ Y ++  +   D 
Sbjct: 359 KTTQRYAHLTQETLLDA 375


>gi|301308115|ref|ZP_07214069.1| integrase [Bacteroides sp. 20_3]
 gi|300833585|gb|EFK64201.1| integrase [Bacteroides sp. 20_3]
          Length = 411

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 65/298 (21%), Positives = 125/298 (41%), Gaps = 24/298 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSLKR 90
           +  T+ +Y    R    F+   TE K++     QL+   IR +       +K+   +++ 
Sbjct: 130 APTTMSTYVYTRRTLAEFIK--TEFKVSDLAFGQLNEQFIRDYQDFCLEKKKLAMETVRH 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            LS +K   +   K   + + +  + +  K+  + P+AL+ +    L D  +     E +
Sbjct: 188 YLSILKKICRIAYKEGHSEKYHFCHFKLPKQKETTPKALSRENFEKLRDLEI----PEKR 243

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRI---QGKGDKIRIVPLLPSV 206
                   +       G   ++A+S+T +N   DD+ +L +   + K D +  V LLP  
Sbjct: 244 RSHVITRDLFLFACYTGTAYADAVSITRENLFQDDEGSLWLKYRRKKTDYLGRVKLLPEA 303

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              I +Y D        + ++ LF      P +    +  ++ LR   GL      H  R
Sbjct: 304 LALIGKYRD--------DTRITLFP-----PQDYHTLRANMKSLRLMAGLSQDLVYHMAR 350

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           HSF T  L+ G  + SI  ++GH  + +TQ+Y  V  +     M  + ++  P+  ++
Sbjct: 351 HSFGTLTLTAGIPIESIARMMGHTNIDSTQVYAQVTDRKISSDMDRLMERRKPAAGKE 408


>gi|229892121|sp|Q1JGQ2|XERS_STRPD RecName: Full=Tyrosine recombinase xerS
          Length = 356

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 67/323 (20%), Positives = 119/323 (36%), Gaps = 45/323 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEK------ITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  + ++F  +L      K      I + T+  L+  ++ AF+   R     
Sbjct: 33  YSFTTLYEYLKEYKRFFDWLMDADLTKVPKIADIDLSTLEHLTKKDLEAFVLYLRERPSL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-------- 126
                 + +   ++ R+LS + S  KYL +     +      RN+ K  S          
Sbjct: 93  NTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAS 152

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDA---------------RNSAILYLLYGCGLRIS 171
           RA N KQ L L D  L    +  K  +                R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLF 230
           EA++L  +++  +   + +  KG K   V +    +  +  Y  +         Q L  F
Sbjct: 213 EAVNLDLKDVNLNMMIIEVIRKGGKRDSVNVAGFAKGYLESYLAVRQRRYKAEKQDLAFF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +      +    T H LRH+ AT L         +   L
Sbjct: 273 LTEYRGVPNRMDASSIEKMVGKYSEDFKI--RVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH     T +YT++ +    + +
Sbjct: 331 GHSSTQVTDLYTHIVNDEQKNAL 353


>gi|17233219|ref|NP_490309.1| integrase/recombinase [Nostoc sp. PCC 7120]
 gi|17135741|dbj|BAB78287.1| integrase/recombinase [Nostoc sp. PCC 7120]
          Length = 319

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/275 (22%), Positives = 121/275 (44%), Gaps = 16/275 (5%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           LS  + ++ E         L     + +++    +L Y    A I     ++    +  R
Sbjct: 31  LSPTSRRTMEKALNVIARLLTSNQCDAMSL-DWSKLRYQH-TAAIRAIFIEQYSPATTNR 88

Query: 91  SLSGIKSFLKYLKKRKITTESN---ILNMRNLKKSNSLP-RALNEKQALTLVDNVLLHTS 146
            L  ++  LK   +    +  +    +++++++  + LP R +  ++  +L+ N L    
Sbjct: 89  MLCAMRRVLKESLRLGFMSAQDYQYAIDLKSVRGDSGLPGRLIKPEEITSLLRNCL---- 144

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS 205
            +   I  R++A++ +L  CGLR SEA++L   +   + + L ++ GKG K R V L P 
Sbjct: 145 -QDNVIGIRDAALIGILSSCGLRRSEAVALEMNDFNREDNLLTVRQGKGGKSRRVYLPPG 203

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRG--IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           V   + ++  +        I  P+ RG  I  + L         ++     G+    + H
Sbjct: 204 VVGILNDWLKIRGKSSGALIC-PVKRGGHIHIQHLTDQAVMAICQKRADSTGI-KPFSPH 261

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             R +F T LL +G D+ ++  + GH  L+TTQ Y
Sbjct: 262 DFRRTFVTRLLESGIDVLTVSQLAGHVNLATTQKY 296


>gi|258650728|ref|YP_003199884.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258553953|gb|ACV76895.1| integrase family protein [Nakamurella multipartita DSM 44233]
          Length = 371

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 67/329 (20%), Positives = 127/329 (38%), Gaps = 38/329 (11%)

Query: 3   GNNLPEIV-SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
             N+P    S  +      WL +++     S  T  +YE + R        +   +I  +
Sbjct: 58  AKNMPAPPPSLTVEAYLGEWLTHMKQHVRRS--TWVAYESNAR-------LHIVPRIGRK 108

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            + QLS  ++R  I   R    G R+++   + +++ L++  + ++ T +    +R  + 
Sbjct: 109 KLSQLSVRDVRLMIDGLRKDGKGKRTVQYVHATLRAALEHAYREELVTRNVAKMVRVERP 168

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           + +    L+  +A  L+          T   D  + A+  ++   GLR SE   L   N+
Sbjct: 169 TPTPKEPLSVAEARRLL----------TATRDDEDHALWVVMLLLGLRRSEVCGLRWDNV 218

Query: 182 MDDQSTLRIQG---------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
             +  TL +                      R VPL   V +A++ +            +
Sbjct: 219 DLENRTLSVTHSVQRVDGKLRELPTKTRRSTRTVPLPAMVHQALVTHRAAMMPTSQYLPE 278

Query: 227 -LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
            + +F    G P+ P    R    L    G+      H LRHS  + LL+ G   R++  
Sbjct: 279 PVYVFGTKIGTPMEPRNLTRRWVTLAERQGI-RRVPLHALRHSCVSLLLAQGVHPRTVME 337

Query: 286 ILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
           I+GH  +  T  +Y +VN +     + E+
Sbjct: 338 IVGHSAIEMTMNVYGHVNLETQRRALDEL 366


>gi|312865168|ref|ZP_07725396.1| site-specific tyrosine recombinase XerS [Streptococcus downei
           F0415]
 gi|311099279|gb|EFQ57495.1| site-specific tyrosine recombinase XerS [Streptococcus downei
           F0415]
          Length = 356

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 67/323 (20%), Positives = 118/323 (36%), Gaps = 45/323 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  + R+F  +L             I +Q +  LS  ++ AFI   R +   
Sbjct: 33  YSFTTLYEYLKEYRRFFEWLMDADLTDAKKLADIPLQVLEHLSKKDMEAFILYLRERPSL 92

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-------- 126
                   +   ++ R+LS + S  KYL +            RN+ K  +          
Sbjct: 93  NTYSTKNGVSQTTINRTLSALSSLYKYLTEEVENDNGEPYFYRNVMKKVATKKKKETLAA 152

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDA---------------RNSAILYLLYGCGLRIS 171
           RA N KQ L L D  +    +  K  +                R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETMEFLDYVDKEYEGKLSNRAKSSFRKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLF 230
           EA++L  +++  +   + +  KG K   V +    +  +  Y  +           L LF
Sbjct: 213 EAVNLDMKDVNLNMMVIEVTRKGGKRDSVNVASFAKPYLEAYLKVRKSRYKAEKGDLALF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +  +   +    T H LRH+ AT L         +   L
Sbjct: 273 LSEYRGVPNRIDASSIEKMVGKYSQDFKI--RVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH     T +YT++ +    + +
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNAL 353


>gi|160936350|ref|ZP_02083719.1| hypothetical protein CLOBOL_01242 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440633|gb|EDP18371.1| hypothetical protein CLOBOL_01242 [Clostridium bolteae ATCC
           BAA-613]
          Length = 305

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/297 (18%), Positives = 115/297 (38%), Gaps = 32/297 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L+ E   S  T+  Y  + + FL FL             R++    +  + + 
Sbjct: 7   VEQFLDFLKEEE-KSDATISKYTYELQMFLQFLGK-----------REIGKELMIQYRTY 54

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             + +   +++   LS + +FLK+    +         ++ LK        ++E + LT 
Sbjct: 55  L-SSRYRPQTVNGKLSAVNAFLKFTGLYEY-------RVKFLKVQRR--AYIDETRELTQ 104

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            +   L  +   +        ++ +    G+R+SE   +T + +M  ++ + ++GK    
Sbjct: 105 KEYERLMETAGRQGKYQLYYLMMTIC-STGIRVSELRYVTVEAVMRGKAEIFMKGK---Y 160

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RIV    ++   +           N      LF    G+PL+       +++L    G+ 
Sbjct: 161 RIVIFPKNLAAQLK-----AFARKNGIRSGSLFCTRSGRPLDRSNICHAMKKLCAKAGVK 215

Query: 258 L-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                 H  RH FA    +   ++  +  ILGH  + TT+IY   + K     + ++
Sbjct: 216 KDKVFPHNFRHLFARSFYAAEKNMAHLADILGHSSIETTRIYVAASIKEHERILNKL 272


>gi|125973032|ref|YP_001036942.1| phage integrase [Clostridium thermocellum ATCC 27405]
 gi|125713257|gb|ABN51749.1| phage integrase [Clostridium thermocellum ATCC 27405]
          Length = 506

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 61/315 (19%), Positives = 116/315 (36%), Gaps = 48/315 (15%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            WL+ +     + + T  SY    RQ    + ++ ++K+T+  I + +   ++ F     
Sbjct: 181 EWLEMMRT--RVRETTYASYNSGIRQ--SIIPYFMDKKLTLTDIEE-NPKYLQDFYQHEL 235

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           ++ +   S+ R  + I+  L++     +   +    +   KK +       +++   L  
Sbjct: 236 SKGLSPNSVLRRHANIRKALQHAFHLGLIKSNPADRIERPKKQDYTASYYTDEELAKLF- 294

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ--NIMDDQSTLRIQ------ 191
                 + +   ++      + L    GLR SE + L     +   D   + IQ      
Sbjct: 295 -----KAAKGDPLELP----IVLAAYYGLRRSEIIGLRWDAIDFNPDDPKITIQFTVTEV 345

Query: 192 ----------------GKGDKIRIVPLLPSVRKAILEY-------YDLCPFDLNLNIQLP 228
                                 R +PL+  +   +L+          LC    N      
Sbjct: 346 NFGDGQGNVIIEKEGTKSKASKRTLPLVKPIADLLLQKKKDIENNRRLCGSCYNDKYLDF 405

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +     G+ + P    ++   L    GL      H LRHS A+ L +NG  L+ IQ  LG
Sbjct: 406 VHVNEIGERMKPNYISQHFALLLEKHGL-KKIRFHDLRHSCASLLYANGVSLKQIQEWLG 464

Query: 289 HFRLSTTQ-IYTNVN 302
           H  +STT  IYT+++
Sbjct: 465 HSDISTTANIYTHLD 479


>gi|196048146|ref|ZP_03115323.1| phage integrase family protein [Bacillus cereus 03BB108]
 gi|196020883|gb|EDX59613.1| phage integrase family protein [Bacillus cereus 03BB108]
          Length = 348

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 119/293 (40%), Gaps = 29/293 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +  S+ T Q Y  D   FL ++        TI TI++LS+ ++  +  +  + K    +L
Sbjct: 59  KKRSERTKQQYLHDLSHFLRYIKE------TIGTIQKLSHNDMEIYFYEL-SNKYAATTL 111

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRN--LKKSNSLPRALNEKQALTLVDNVLLHTS 146
           +R  + ++ FLKY+      +++    ++   +KK   + R L  ++   ++D       
Sbjct: 112 RRKKTVVQQFLKYVYDNNGLSDNFSSRLKKVSIKKEELVNRDLYPEEVTQILD------- 164

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----DQSTLRIQGKGDKIRIVPL 202
            E K  +     I +LL   GLRI E  +    +++     +   LR+ GKG+K R V +
Sbjct: 165 -ELKKSNYFVYTIFFLLTTTGLRIEEIATAKWADLVFHSSLNAYLLRVVGKGNKSREVRI 223

Query: 203 LPSVRKAILEYYDLCPF--DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-- 258
                 A+     L     +L+++          G           + +      L    
Sbjct: 224 FEDTLYALYHVRSLRKQTIELDVSNTSAFLPKADGTNYRADYLSSLVAKKIEETNLDFLR 283

Query: 259 ----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                 T HT RH  A +L+  G +L+ I+  LGH  + TT+ Y    ++   
Sbjct: 284 YRQDRITPHTCRHFMANYLMEKGIELKKIRDYLGHESIMTTERYLRERTRRQN 336


>gi|305432060|ref|ZP_07401227.1| phage integrase family site-specific recombinase [Campylobacter
           coli JV20]
 gi|304445144|gb|EFM37790.1| phage integrase family site-specific recombinase [Campylobacter
           coli JV20]
          Length = 368

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 69/290 (23%), Positives = 128/290 (44%), Gaps = 24/290 (8%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R      + +Y    ++   +L FY      + +++Q+    I   ++   T  + D S 
Sbjct: 80  RNAGLNGVNTYFNPLKKVFEYLNFYK-----LHSLKQIDEELIVEVLASI-TGALSDASK 133

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLK--------KSNSLPRALNEKQALTLVDN 140
           K     + +F  +L K+    E   +    LK        K   LP  +NE +    ++ 
Sbjct: 134 KNYRIAVINFFDFLDKQNEEDEKAHIFNIVLKNWGGITGSKGAKLPEFMNEDELKKFLEA 193

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIR 198
           +    + + K    RN  I+ ++   G+R+SEA+++  ++I ++     +RI+ KG+K R
Sbjct: 194 IE---NSDFKNNTIRNKLIIKIIIFTGIRVSEAINIKLKDISEENELYIIRIRAKGNKYR 250

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +V +   + + +L+   +      L+    LF    GK L      R + Q+    G+  
Sbjct: 251 VVMIKKELIEHLLKDVRVNY----LSEDGLLFVNRNGKALTQAYVSRIVEQILFRAGIRK 306

Query: 259 STT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
               AH LRH+FAT L     DL  +Q  LGH  L+T++IYT+ ++    
Sbjct: 307 QKNGAHMLRHTFATLLYKKQKDLVLVQEALGHANLNTSRIYTHFDNDKLK 356


>gi|229010701|ref|ZP_04167898.1| Tn554-related, transposase A [Bacillus mycoides DSM 2048]
 gi|228750375|gb|EEM00204.1| Tn554-related, transposase A [Bacillus mycoides DSM 2048]
          Length = 350

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 60/349 (17%), Positives = 134/349 (38%), Gaps = 80/349 (22%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+ L+   G S  T ++Y    +Q+  +L        T +  R++   ++  F+   +
Sbjct: 3   KYLKYLDFT-GKSSNTQKTYCYALKQYFSYLQE------TEKDYREIRLEDLADFVGWLQ 55

Query: 80  T--------------QKIGDRSLKRSLSGIKSFLKYLKKRKITTES-------------- 111
                           K  +R++  +++ + +F  YL + +  ++               
Sbjct: 56  NPYGSKRITSLVPVKTKKTERTVNLTVTAVTNFYDYLYRNEELSQDMGEKLMRQFFTGGR 115

Query: 112 ---------------NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
                          +I N+  +K+     + L ++Q    +              + R+
Sbjct: 116 TRYKSFLHHVNKDKSSIRNVLKVKEPRKRIQILTKEQVQQTLVAT----------TNIRD 165

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGD---------KIRIVPLLP 204
           + ++ LL+  GLRI EALSL  ++   D      +R+  +G+           R + +  
Sbjct: 166 TFLIQLLFETGLRIGEALSLFLEDFQFDYGKGHRIRLTDRGELENGAKLKTGEREIFVSQ 225

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRG----KPLNPGVFQRYIRQLRRYLGLPLST 260
           ++     +Y      +LN++    +F  +RG    KP+     +   ++LR+   +  + 
Sbjct: 226 ALMDLYDDYLYEVIDELNIDTNF-VFVKLRGENKGKPMTYSDVEAMFKRLRQKTRI--NV 282

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGD 308
             H  RH+ AT       D++ +Q  LGH ++ TT  +Y + + +    
Sbjct: 283 HPHLFRHTHATMYYQETKDIKQVQERLGHSQIQTTMNLYLHPSDEEIRK 331


>gi|294794983|ref|ZP_06760118.1| putative site-specific recombinase, phage integrase family
           [Veillonella sp. 3_1_44]
 gi|294454345|gb|EFG22719.1| putative site-specific recombinase, phage integrase family
           [Veillonella sp. 3_1_44]
          Length = 357

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 60/308 (19%), Positives = 120/308 (38%), Gaps = 42/308 (13%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           E+ ++  T QSY     +++        +KI    + ++    +R          +  R+
Sbjct: 66  EKSITPATYQSYTGIINRYIR-------DKIGGVKLAEIKPNTLRYVFESM--DGLSSRT 116

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNEKQALTLVDNVLLHTS 146
           +  +++ + S L+   K  I  ++ + N+   K         L+  +    + N+     
Sbjct: 117 ISYTMTILSSILEQAVKDDIIPKNYMKNIDRPKHVKVRHMVTLSADEVKNFLSNI----- 171

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---------------- 190
                 ++ + A+  L +  G+R SE L L   +I   +ST+ I                
Sbjct: 172 -----SNSEHHALFKLAFATGMRRSELLGLRWSDIDFKKSTISISQTALKIGSTAVISNT 226

Query: 191 QGKGDKIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
                  RI+ +     + ++++           +N      +F GI+G P  P    + 
Sbjct: 227 TKTTSSKRIIAIDTDTIQELMKHKTTIDKRRIKTMNWINNNLVFPGIKGAPRCPDEVSKL 286

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKN 305
            ++    +G P + T H  RH+ AT L+ NG ++++IQ  LGH     T   Y++V  K 
Sbjct: 287 CKKYANLIGKP-TFTMHGTRHTHATLLIENGANMKAIQERLGHASFQETMDTYSHVTPKM 345

Query: 306 GGDWMMEI 313
             D +  I
Sbjct: 346 EDDIVERI 353


>gi|139473728|ref|YP_001128444.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes
           str. Manfredo]
 gi|166918905|sp|A2RED8|XERS_STRPG RecName: Full=Tyrosine recombinase xerS
 gi|134271975|emb|CAM30213.1| tyrosine recombinase XerC [Streptococcus pyogenes str. Manfredo]
          Length = 356

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 66/323 (20%), Positives = 118/323 (36%), Gaps = 45/323 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  + ++F  +L             I + T+  L+  ++ AF+   R     
Sbjct: 33  YSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKNDLEAFVLYLRERPSL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-------- 126
                 + +   ++ R+LS + S  KYL +     +      RN+ K  S          
Sbjct: 93  NTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAS 152

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDA---------------RNSAILYLLYGCGLRIS 171
           RA N KQ L L D  L    +  K  +                R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIISLLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLF 230
           EA++L  +++  +   + +  KG K   V +    +  +  Y  +         Q L  F
Sbjct: 213 EAVNLDLKDVNLNMMIIEVIRKGGKRDSVNVAGFAKGYLESYLAVRQRRYKAEKQDLAFF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +      +    T H LRH+ AT L         +   L
Sbjct: 273 LTEYRGVPNRMDASSIEKMVGKYSEDFKI--RVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH     T +YT++ +    + +
Sbjct: 331 GHSSTQVTDLYTHIVNDEQKNAL 353


>gi|319641868|ref|ZP_07996545.1| transposase [Bacteroides sp. 3_1_40A]
 gi|317386541|gb|EFV67443.1| transposase [Bacteroides sp. 3_1_40A]
          Length = 407

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 52/288 (18%), Positives = 108/288 (37%), Gaps = 15/288 (5%)

Query: 32  SKLTLQSYECDTRQFLIF-LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +  T+Q YE   +    F    Y ++ I +  + +    +   ++  + ++K    +  +
Sbjct: 131 APATVQRYETSLKHTQDFVWETYHKKDILLDEVSRQFVEDYEFWL--KTSKKCCHNTATK 188

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L   K  ++    +        L +R        P  L + +   L+   +        
Sbjct: 189 YLKNFKKIIRIALAKGWMKNDPFLEIR-FSLDKVEPDFLEDSEIRKLISKEI------DI 241

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
               +   I       GL  S+   L  ++I++D + +R   KG +   +     + +  
Sbjct: 242 PRLGQVRDIFVFCCFTGLAFSDIHGLGKEHIVEDSNGVRWIRKGRQKTKIMCNIPLMEVP 301

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           L+  +    +        LF  +  + +N      Y+++L    G+  + T H  RH+FA
Sbjct: 302 LKILEKYSTNEYCRKHGVLFPVLCNQKMNA-----YLKELADICGIKKTLTTHVARHTFA 356

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           T  L+NG  + S+  +LGH  +  T+ Y  V  +     M +I    H
Sbjct: 357 TFALANGVSIESVAKMLGHTNVQMTRHYARVLDRTVIREMSQIKMDFH 404


>gi|222529021|ref|YP_002572903.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222455868|gb|ACM60130.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 400

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/328 (18%), Positives = 120/328 (36%), Gaps = 47/328 (14%)

Query: 18  RQNWLQ-NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
            ++WL   L       K TL+      + +L ++  +    I    ++ L    ++A  +
Sbjct: 74  LKDWLNTWLWE---YKKQTLR--PSTFKDYLCYIERHINPAIGHYKLKDLRPEHLQALYN 128

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK-KSNSLPRALNEKQAL 135
            +  + +   ++K+  + + S L    K  +   +        K K     R L+ ++  
Sbjct: 129 AKYQEGLSISTIKQIHTVLHSALDQALKNGLVNRNVSEATTLPKGKPKREIRILSLEEQQ 188

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---- 191
             +                R      +    GLRI E L+L  +++      + ++    
Sbjct: 189 RFI----------AALEGERLKTAFLVELASGLRIGELLALRWKDVNFKDGYIEVRRSLQ 238

Query: 192 --------------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--- 228
                                     RIVPL P + + + ++      +      L    
Sbjct: 239 RVRIFDGGNSKKTALAFQEPKTEAGKRIVPLPPVIIEELKQHRKKQLEEKLKAGALYEDN 298

Query: 229 --LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
             +F    G P++P  F+R   ++R   GL  S   H LRH++AT LL      + +Q +
Sbjct: 299 DLVFATELGTPIDPRNFERLFYRIREKAGLDKSVNFHALRHTYATRLLEANEHPKVVQEL 358

Query: 287 LGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           LGH  +STT  IY++V  +      M++
Sbjct: 359 LGHKDISTTLNIYSHVMPEIKKAAAMKL 386


>gi|218442312|ref|YP_002380638.1| integrase [Cyanothece sp. PCC 7424]
 gi|218175416|gb|ACK74145.1| integrase family protein [Cyanothece sp. PCC 7424]
          Length = 313

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/274 (21%), Positives = 115/274 (41%), Gaps = 15/274 (5%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  ++ +           L     + +T+    +L Y    A I     ++    +  + 
Sbjct: 31  SPGSVATMRSSLNVIASLLTEGECDAMTL-NWARLRYQH-TAAIRAIFKERYCATTANKM 88

Query: 92  LSGIKSFLKYLKKRKITTE---SNILNMRNLKKSNSLP-RALNEKQALTLVDNVLLHTSH 147
           L  +K  L    +  +      +  ++   +K    L  RAL+  +   L++        
Sbjct: 89  LCALKRVLAEAVRLDLMEATDYAKAVDFPKIKGKKKLRGRALSGDEISALIEVCR----Q 144

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
           +   +  R++AI+ +L G GLR +E  +L  ++ + D   L ++ GKGDK R V L  +V
Sbjct: 145 DESPLGVRDAAIIAILRGTGLRRAELAALELRDFIADGGVLEVREGKGDKDRTVYLPHNV 204

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
              + ++  +   D    +  P+ +G R   + L+P    + +++     G+  S + H 
Sbjct: 205 ISYVNDWIAVR-GDAPGALLCPIRKGGRIEGRHLHPDAVLKIVKKRATQAGVE-SFSPHD 262

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            R +F + LL  G D+ ++Q + GH    TT  Y
Sbjct: 263 FRRTFCSDLLDAGVDIVTVQKLAGHASPETTAKY 296


>gi|281491512|ref|YP_003353492.1| phage integrase [Lactococcus lactis subsp. lactis KF147]
 gi|281375230|gb|ADA64743.1| Phage protein, integrase [Lactococcus lactis subsp. lactis KF147]
          Length = 273

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 61/306 (19%), Positives = 131/306 (42%), Gaps = 46/306 (15%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           LKE + +L+    +  L K T+++Y    RQ   ++           ++ + +  E + +
Sbjct: 4   LKEYEYFLK----DNELGKNTIKNYLTTLRQLDDYIVS------NDFSLDKETLIEFKQY 53

Query: 75  I---SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           +     +  +    +++ + L  +  +LK+L+     +    L+++ LK           
Sbjct: 54  LKDFQYKSGKNYKLKTINQKLIIVNVYLKWLETEGYVSGR--LSVKLLKSQTK-----EH 106

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           ++++T  D   L  +  T+ +       + ++   G+RISE  S   ++   ++  + I+
Sbjct: 107 RESITEADYKRLIKNSTTEEM----RLFILVIGNTGMRISEVCSFKVED--LNKKIIVIE 160

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            KG   RI+ +   ++K +  Y      +     +   ++  R   +N          L+
Sbjct: 161 NKGK-QRIITIPQFLKKQLKSYVKKAGIE-----ETIFYKNQRTYRVN----------LK 204

Query: 252 RYLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +  G+          H++RH FA   L NGGD   +Q +LGH +++TT IYT ++S    
Sbjct: 205 KIAGIAKVNKEKVYPHSIRHYFAKSFLMNGGDATVLQQLLGHEQIATTTIYTKLSSNELS 264

Query: 308 DWMMEI 313
           D   +I
Sbjct: 265 DQFSKI 270


>gi|55822960|ref|YP_141401.1| site-specific tyrosine recombinase XerS [Streptococcus thermophilus
           CNRZ1066]
 gi|81559404|sp|Q5LZT9|XERS_STRT1 RecName: Full=Tyrosine recombinase xerS
 gi|55738945|gb|AAV62586.1| integrase/recombinase, tyrosine family [Streptococcus thermophilus
           CNRZ1066]
          Length = 356

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/324 (19%), Positives = 118/324 (36%), Gaps = 47/324 (14%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEK------ITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  + ++F  +L             I I+T+  L+  ++ +F+   R     
Sbjct: 33  YSFTTLYEYLKEYKRFFNWLIDSGISDADDIASIHIKTLENLTKKDMESFVLYLRERPSL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKR--------------------KITTESNIL 114
                 Q +   ++ R+LS + S  KYL +                     K   E+   
Sbjct: 93  NTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKISTKKKKETLAA 152

Query: 115 NMRNLKKSNSL----PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
              N+K+   L     + L+  +    V       S   K  + R+ AI+ LL   G+R+
Sbjct: 153 RAENIKQKLFLGDETMKFLDYVENEYEVKLSNRAKSSFYKNKE-RDLAIIALLLSSGVRL 211

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PL 229
           SEA++L  ++I   +  + +  KG +   V +    R  +  Y  +         Q   L
Sbjct: 212 SEAVNLDLKDINLKRMVIDVTRKGGQRDSVNMASFARPYLENYLSIRNKRYKAEKQDVAL 271

Query: 230 FRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           F          ++    ++ + +  +   +    T H LRH+ AT L         +   
Sbjct: 272 FLTEYRGVPNRIDASSIEKMVAKYSQDFKI--RVTPHKLRHTLATRLYDATKSQVLVSHQ 329

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWM 310
           LGH     T +YT++ +    + +
Sbjct: 330 LGHASTQVTDLYTHIVNDEQKNAL 353


>gi|229892113|sp|Q48TG2|XERS_STRPM RecName: Full=Tyrosine recombinase xerS
          Length = 356

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 66/323 (20%), Positives = 118/323 (36%), Gaps = 45/323 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  + ++F  +L             I + T+  L+  ++ AF+   R     
Sbjct: 33  YSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLEAFVLYLRERPSL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-------- 126
                 + +   ++ R+LS + S  KYL +     +      RN+ K  S          
Sbjct: 93  NTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAS 152

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDA---------------RNSAILYLLYGCGLRIS 171
           RA N KQ L L D  L    +  K  +                R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLF 230
           EA++L  +++  +   + +  KG K   V +    +  +  Y  +         Q L  F
Sbjct: 213 EAVNLDLKDVNLNMMIIEVIRKGGKRDSVNVAGFAKGYLESYLAVRQRRYKAEKQDLAFF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +      +    T H LRH+ AT L         +   L
Sbjct: 273 LTEYRGVPNRMDASSIEKMVGKYSEDFKI--RVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH     T +YT++ +    + +
Sbjct: 331 GHSSTQVTDLYTHIVNDEQKNAL 353


>gi|253700090|ref|YP_003021279.1| integrase family protein [Geobacter sp. M21]
 gi|251774940|gb|ACT17521.1| integrase family protein [Geobacter sp. M21]
          Length = 334

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 54/250 (21%), Positives = 111/250 (44%), Gaps = 26/250 (10%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           I    I ++    I+  +       +   ++ R L+ +K+ L+Y ++          +++
Sbjct: 95  IGDVPISKIDEETIKLLVRLLEGSGVKGATVNRYLATVKTLLRYHRQ-------PWEHIQ 147

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA-ILYLLYGCGLRISEALSL 176
             K+S    R ++ ++   +V N+L  T H ++ +     A ++ +L   G R+SE L+L
Sbjct: 148 LKKESKGRIRVISREE-EAMVVNLLRDTDHGSRRLYFPEVADLVEVLADTGCRLSEVLNL 206

Query: 177 TPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
             ++I  D + + +   KGDK R +P+   V   +              +  PL    + 
Sbjct: 207 GYEDINFDTNLITVWINKGDKPRSIPMTNRVGGILQ----------ARQVGNPL----KP 252

Query: 236 KPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
             ++    +   + +R+ +GL        H LRH+ AT L+  G DL +++  LGH  + 
Sbjct: 253 FTIDIDKVETAWKWVRKKMGLAGDPEFVPHALRHTTATRLIDGGIDLYTVKEWLGHSTIQ 312

Query: 294 TTQIYTNVNS 303
            T+ Y ++N 
Sbjct: 313 VTERYAHLNP 322


>gi|119715851|ref|YP_922816.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119536512|gb|ABL81129.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 368

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/300 (17%), Positives = 112/300 (37%), Gaps = 47/300 (15%)

Query: 35  TLQSYECDT-RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
           TL +Y     R F+         KI          +EI+ +++      +   S+++  +
Sbjct: 83  TLAAYRSYLDRHFIPTFGRRPMGKIL--------PSEIQRWVTTATEHGLSPASVRKYHT 134

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            + S  +   + ++ T +  ++    K      R L  ++ + ++             + 
Sbjct: 135 MLHSVFERALRDRVVTFNPCVHTELPKVVKKKARTLTPEEYVAIL-----------TALP 183

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---------------------- 191
            ++  ++      GLR  E ++L P+++   +  L ++                      
Sbjct: 184 EQHRLMVETAINTGLRWGELIALKPRHLDLIKRQLTVEETVVEVSIKNSPTGHRMLTKPY 243

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ-RYIRQL 250
            K ++ R + L   +   + ++       L+      LF    G P++   F+ R     
Sbjct: 244 PKDNEARTMGLPADLVDQLADWITTRRLRLD----DLLFATREGTPISRNTFRTRVWLPA 299

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            R  G+      H LRH+ A+ LL+ G DL+S+   +GH +++TTQ Y +         +
Sbjct: 300 IRASGVDFDVRVHDLRHAHASWLLAGGSDLKSVMDRMGHAQITTTQKYLHALPDADAKNL 359


>gi|73920478|sp|Q5XC26|XERS_STRP6 RecName: Full=Tyrosine recombinase xerS
          Length = 356

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 66/323 (20%), Positives = 118/323 (36%), Gaps = 45/323 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  + ++F  +L             I + T+  L+  ++ AF+   R     
Sbjct: 33  YSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLEAFVLYLRERPSL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-------- 126
                 + +   ++ R+LS + S  KYL +     +      RN+ K  S          
Sbjct: 93  NTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAS 152

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDA---------------RNSAILYLLYGCGLRIS 171
           RA N KQ L L D  L    +  K  +                R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIISLLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLF 230
           EA++L  +++  +   + +  KG K   V +    +  +  Y  +         Q L  F
Sbjct: 213 EAVNLDLKDVNLNMMIIEVIRKGGKRDSVNVAGFAKGYLESYLAVRQRRYKAEKQDLAFF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +      +    T H LRH+ AT L         +   L
Sbjct: 273 LTEYRGVPNRMDASSIEKMVGKYSEDFKI--RVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH     T +YT++ +    + +
Sbjct: 331 GHSSTQVTDLYTHIVNDEQKNAL 353


>gi|89073768|ref|ZP_01160282.1| integrase/recombinase [Photobacterium sp. SKA34]
 gi|89050543|gb|EAR56035.1| integrase/recombinase [Photobacterium sp. SKA34]
          Length = 480

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 60/291 (20%), Positives = 118/291 (40%), Gaps = 28/291 (9%)

Query: 43  TRQFLIFLAFYTEEKITIQTI--RQLSYTEIRAFISKR-------RTQKIGDRSLKRSLS 93
              F  F      E+     I    +  + I++F+S R       R +     +    L 
Sbjct: 194 LEAFSCFCIRSCVERFDWSRILYAPILQSTIQSFLSDRIDNQSSDRKKTYAPATADNLLR 253

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLP----RALNEKQALTLVDNVLLHTSHET 149
            ++   ++    ++ +   +  ++ +K          R L+  +   +    L   + + 
Sbjct: 254 MLRGVAQHAWLAELISVETLERIKAIKLPRGSRQSSGRYLSYSELDHISAITL---NQKN 310

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL--LPSVR 207
           K    R++AI +L+Y  GLR +E +++   +I  ++  LR+ GKG+K R VP      + 
Sbjct: 311 KVKALRDNAIFWLMYEAGLRRAEVINVNSFDIDMNRCQLRVVGKGNKERYVPFSRNSDLY 370

Query: 208 KAILEYYDLCPFDLNLNIQLPL-----FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            A+ ++  +   D N N+         ++ +    L         ++L   LG     + 
Sbjct: 371 NAMAKWLGVRLKDFNPNLPTLFCTINRYQSLTYMRLTTQTLNDLCKKL-NMLGFSRVVSP 429

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           H  RHS AT+LL +G DL  +   +GH  ++TTQ Y     +   D +  +
Sbjct: 430 HDFRHSVATNLLRSGYDLLLVSKFMGHSSITTTQRY----DRRTDDDLKGV 476


>gi|154175422|ref|YP_001408733.1| oxygen-independent coproporphyrinogen III oxidase [Campylobacter
           curvus 525.92]
 gi|112802099|gb|EAT99443.1| oxygen-independent coproporphyrinogen III oxidase [Campylobacter
           curvus 525.92]
          Length = 267

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 57/305 (18%), Positives = 119/305 (39%), Gaps = 42/305 (13%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++ + + +L N    + LS+ T+ +Y    +QFL                  +S   ++A
Sbjct: 1   MMTQFKTYLTN----KNLSQNTIFAYLFALKQFLDRY-------------DDVSRQNLQA 43

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNE 131
           +           +++   L  I  +L+       + +   L +  +K      L   +++
Sbjct: 44  YKLYLIENN-SPKTVNLRLRAINCYLQ-------SIKKPKLQLSFVKVQQKSFLQNVISK 95

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
                     LL   H+ KW       ++  L   G+R+SE +    ++++       I 
Sbjct: 96  ADYEYF-KACLLKDGHK-KW-----YFVVRFLAATGVRVSELVKFKAEHVVL--GYFDIY 146

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            KG K+R + +  S++ +  ++ D             +F     KP+ P      +++  
Sbjct: 147 SKGAKMRRIYIPKSLQASAKKWLDEIGI-----KSGFIFLNRFSKPITPRGIASELKKFA 201

Query: 252 RYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           R  GL  S    H+ RH FA + L++  D+  +  ++GH  + TT+IY    +    D +
Sbjct: 202 RIYGLDQSVIYPHSFRHLFAKNFLASCNDIAFLADLMGHTSIQTTRIYLRRTAAEQRDLI 261

Query: 311 MEIYD 315
             + D
Sbjct: 262 DSVID 266


>gi|254480874|ref|ZP_05094120.1| site-specific recombinase, phage integrase family [marine gamma
           proteobacterium HTCC2148]
 gi|214038669|gb|EEB79330.1| site-specific recombinase, phage integrase family [marine gamma
           proteobacterium HTCC2148]
          Length = 392

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 107/283 (37%), Gaps = 25/283 (8%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           +S++ D               I  + + +++ +E++ F +    + +   +    L  I+
Sbjct: 121 RSWKNDLE----MHNLRISAFIGNKRLNKITRSEVQRFHASLVEEDLSPATADHHLKLIR 176

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
             L      ++   + +  ++   + N + R L++++   L+  +   ++          
Sbjct: 177 QALNLAVDWELLEANPVAKVKLFNQDNQVERYLSDEEMQRLLKVLKTDSNRVVCN----- 231

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEY 213
             ++  L   G R+SEALS    +I        IQ    K  K R VPL       +   
Sbjct: 232 --VILFLLSTGARVSEALSAEWSDIDRKNRVWVIQATNSKSKKKRSVPLNDVAIGVLDAL 289

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                 D        LF G RG PL      +   ++R   GL      H LRHS+A+ L
Sbjct: 290 DTEGKHDR-------LFVGKRG-PLT--TINKVWFRIRSEAGLE-DYRIHDLRHSYASLL 338

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           ++ G  L  +Q  LGH     T  Y +++ ++         D+
Sbjct: 339 VNAGHSLFEVQQALGHSDPKVTMRYAHLSKESLQRAANSASDK 381


>gi|332523022|ref|ZP_08399274.1| site-specific tyrosine recombinase XerS [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314286|gb|EGJ27271.1| site-specific tyrosine recombinase XerS [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 356

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 117/326 (35%), Gaps = 45/326 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  + ++F  +L             I + T+ QL+  ++ AF+   R     
Sbjct: 33  YSFTTLYEYLKEYKRFFDWLLDSGISNVPKIADIELHTLEQLTKKDMEAFVLYLRERPSL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                 + +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 93  NTYSTKEGVSQTTINRTLSALSSLFKYLTEEVENDQGEPYFYRNVMKKVATKKKKETLAS 152

Query: 120 KKSNSLPRALNEKQALTLVDNVLL--------HTSHETKWIDARNSAILYLLYGCGLRIS 171
           +  N   +    ++ +  ++ +                +    R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGEETMEFLEYIDYGYENNLSNRAKSSFRKNKERDLAIIALLLASGIRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLF 230
           EA++L  +++      + +  KG K   V +    +  +  Y ++         Q    F
Sbjct: 213 EAVNLDLKDVNLKMMVIEVTRKGGKRDSVNVASFAKAYLEAYLEIRKKRYKAEKQDQAFF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +  +   +    T H LRH+ AT L         +   L
Sbjct: 273 LTEYRGIPNRIDASSIEKMVAKYSQNFKI--RVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH     T +YT++ +    + + ++
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNALDKL 356


>gi|295699756|ref|YP_003607649.1| integrase family protein [Burkholderia sp. CCGE1002]
 gi|295438969|gb|ADG18138.1| integrase family protein [Burkholderia sp. CCGE1002]
          Length = 584

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/335 (18%), Positives = 120/335 (35%), Gaps = 57/335 (17%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR------------ 79
           +  T ++Y  +  + +++     +     Q +  L+  +  A+ +  R            
Sbjct: 248 APHTARAYRREAERLMLWAVVERQ-----QPLSSLTTDDAIAYRAFLRHPAPRARWTGPP 302

Query: 80  -----------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-- 126
                       + +  RS   +L+ + +  ++L +++    +    +       + P  
Sbjct: 303 RPRDSVEWRPFARSLSPRSAGYALAVLNALFRWLVEQRYVLGNPFTGLTVRGGQRTTPFD 362

Query: 127 --RAL--NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-- 180
             RAL  +E QA+  + + L  +         R   +L  LY  GLR  E +  T ++  
Sbjct: 363 TARALTSSEWQAVRGLADRLEGSYGWQAPAAQRLRFLLDFLYATGLRAQELVGATLRDIQ 422

Query: 181 -IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR-----GIR 234
               D+  LR+ GKG +   V L P    A+  Y       +      P        G  
Sbjct: 423 IDDRDEWWLRVTGKGARAGSVALPPLALDALERYLAQRGLPVTRRRWDPAAPVVASLGPE 482

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLST---------------TAHTLRHSFATHLLSNGGD 279
               NP    R  + L  + GL                   + H LRH+ A+H L+ G D
Sbjct: 483 VHSNNPVSATRLRQVLDAFFGLAAGVFLDENPEFAARLQQASPHWLRHTHASHALAGGVD 542

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           L +++  L H  +STT  Y + ++      +  ++
Sbjct: 543 LVAVRDNLRHASISTTSTYLHDDNARRAQQVSAVF 577


>gi|300697577|ref|YP_003748238.1| integrase/recombinase protein [Ralstonia solanacearum CFBP2957]
 gi|299074301|emb|CBJ53848.1| putative integrase/recombinase protein [Ralstonia solanacearum
           CFBP2957]
          Length = 568

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 70/330 (21%), Positives = 121/330 (36%), Gaps = 42/330 (12%)

Query: 16  KERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           KE +  +    IERG  LS LT +    D   +  FL   T  +  +   R  +  + R 
Sbjct: 247 KEAERLILWAIIERGRPLSSLTTE----DAIAYRGFLRHPTPHERWVGPARPRASADWRP 302

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F     T  +  RS+  SLS + +  ++L +++    +    ++      +   AL+   
Sbjct: 303 F-----TDGLSARSIAYSLSVLGAMFRWLVQQRYVLANPFAGIKVRGGGRT--AALDASH 355

Query: 134 ALTLVDNVLLHT-SHETKWIDARN-------SAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           A T  +  L+ T +   +W              +L   Y  GLR SE +      +  D+
Sbjct: 356 AFTEGEWALVRTIADGLEWSYGWEAPAAQRLRFVLDFAYATGLRASELIGARLSGVETDR 415

Query: 186 ---STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-- 240
                L + GKG +   V L P  R A+  Y       +      P    I    L+P  
Sbjct: 416 QGDHWLSLVGKGGRAGKVALPPLARTALDRYLVERGLPVTRARWNPQTPLIGALGLDPDG 475

Query: 241 --------GVFQRYIRQLRR--------YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
                    V +R+                      + H +RH+ A+H L+ G +L +++
Sbjct: 476 GITGSRLWSVVRRFFWAAANIIEGDHTVLAEKLRKASPHWMRHTHASHALARGAELTTVR 535

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
             L H  +STT IY + +       +   +
Sbjct: 536 DNLRHASISTTSIYLHGDDVKRARQIEAAF 565


>gi|206579294|ref|YP_002238658.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
 gi|206568352|gb|ACI10128.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
          Length = 332

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 54/303 (17%), Positives = 109/303 (35%), Gaps = 31/303 (10%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSLKR 90
           +  T+ +Y      +L F            T        +  ++    T +++   +++ 
Sbjct: 31  APNTINAYARGVNDWLAFCHSV------ALTAAVAGRDTVALYVRSLHTGRQLAAATIRH 84

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRN----------LKKSNSLPRALNEKQALTLVDN 140
            L+ ++ +  +L +  I   + +               +     LP   ++ + L  ++ 
Sbjct: 85  RLTVVRLYNDWLCEEGIRERNPVRRGVWKNGGKGKAGIVPVQRRLPWIPDDAEWLRFLEV 144

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKI 197
                       D R   +L L Y CGLR  E  ++   +I   Q  L ++    K    
Sbjct: 145 --------AGQADIRTRFMLALAYDCGLRREELCTVATGDIDPSQRLLTVRAEHTKNRFG 196

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK--PLNPGVFQRYIRQLRRYLG 255
           R+VP  P   +    +        +    L L R  R +  P++   + + +R L     
Sbjct: 197 RVVPYSPVTGELYTAWLTERRMLSSSRGPLFLSRSPRNRAEPISNWTWSKVVRGLALKAD 256

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            PL  + HT RH   T L   G D+  I +  GH R+ +T +Y ++++++          
Sbjct: 257 FPL-ISTHTFRHLCLTELARVGWDIHEIAAFAGHRRIQSTLLYIHLSARDLSSRFNCTVA 315

Query: 316 QTH 318
             H
Sbjct: 316 SLH 318


>gi|296269753|ref|YP_003652385.1| integrase family protein [Thermobispora bispora DSM 43833]
 gi|296092540|gb|ADG88492.1| integrase family protein [Thermobispora bispora DSM 43833]
          Length = 364

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 72/345 (20%), Positives = 133/345 (38%), Gaps = 38/345 (11%)

Query: 7   PEIVSFELLKERQNWLQ---NLEIERGLSKLTLQSYECDTRQFLIFLA-FYTEEKITIQT 62
           P+++   + +    +++      +   LS  T + Y  D   F          + +T + 
Sbjct: 4   PQVIRLTVQEAADRYIELVRAKAVTGTLSPATAEVYARDVATFARLAGPDRVLDDLTGED 63

Query: 63  IRQLSYTEIRAFISKRR---------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI 113
           +  +     R    +R+           +    S  R    I    ++         + +
Sbjct: 64  VDAVLLAFARKPDERRKNPSSPGRPDEGRQSPASQLRFRRSISGLFQHAVSAGWVQMNPM 123

Query: 114 -LNMRNLKKSNSLP---RALNEKQALTLVDNVLLHTS--------HETKWIDARNSAILY 161
            ++    ++   LP   RAL  +QA  L+       +         + +  + R++ I+ 
Sbjct: 124 EVSSVMPRERGGLPPKRRALTREQAEGLIAAARSAAASPDSATSKRKDQRTEVRDALIVL 183

Query: 162 LLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           LL   G R+SE +    ++   +      RI GKG K R VPL   V +A+  Y  +   
Sbjct: 184 LLTTVGPRVSELVRANVEDFYTNNGIRYWRIFGKGGKTRDVPLPREVAEALDAYLAVR-- 241

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNG 277
                 +  L    RG+ L  G  Q  I ++ R +        T H LRH+ ATHLL++G
Sbjct: 242 --KGGDEKALLLSWRGRRLARGDVQAVIDRVLRRVEPERRRSVTPHGLRHTTATHLLADG 299

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
            D+ +++ +LGH  LST   Y     ++     +E   + HP + 
Sbjct: 300 TDMDAVRRVLGHGDLSTLGRY-----RDELPGELEAAMRVHPLLR 339


>gi|228912351|ref|ZP_04076045.1| Phage integrase [Bacillus thuringiensis IBL 200]
 gi|228847299|gb|EEM92259.1| Phage integrase [Bacillus thuringiensis IBL 200]
          Length = 319

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 65/286 (22%), Positives = 118/286 (41%), Gaps = 29/286 (10%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +  S+ T Q Y  D   FL ++        TI TI++LS+ E+  +  +  ++K    +L
Sbjct: 31  KKRSERTKQQYLHDLSHFLRYIKE------TIGTIQELSHNEMEIYFYEL-SKKYAATTL 83

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++  + ++ FLKY+      +++    ++ +  KK   + R L  ++   ++D       
Sbjct: 84  RKKKTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLYPEEVTQILD------- 136

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----DQSTLRIQGKGDKIRIVPL 202
            E K  +    A  +LL   GLRI E  +    +++     +   LR+ GKG+K R V +
Sbjct: 137 -ELKKSNYFIYATFFLLSTTGLRIEEIATAKWADLVFHSSLNAYLLRVVGKGNKSREVRI 195

Query: 203 LPSVRKAILEYYDLCPF--DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-- 258
                 AI     L     +L+ +          G           + +    + L    
Sbjct: 196 FKDTLDAICHVRSLRKQTTELDASSTSAFLPKADGTNYRADYLSSVVAKKIEEINLDFLR 255

Query: 259 ----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                 T HT RH  A +L+  G +L+ I+  LGH  + TT+ Y  
Sbjct: 256 YRQDRITPHTCRHFMANYLMEKGVELKKIRDYLGHESIMTTERYLR 301


>gi|260893196|ref|YP_003239293.1| integrase family protein [Ammonifex degensii KC4]
 gi|260865337|gb|ACX52443.1| integrase family protein [Ammonifex degensii KC4]
          Length = 391

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 47/305 (15%), Positives = 106/305 (34%), Gaps = 36/305 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R     TL +     R +           I    + +L+  ++   +++   +     + 
Sbjct: 79  RSWRPNTLANKRTAARAW--------GRLIGHLEVERLTPADVELALARLAEE-YAPSTA 129

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           K   S  +  L++ +KRK+        +   +           ++A   ++ +      E
Sbjct: 130 KEVFSSFRQALRWARKRKLLHHDPTEGVPAPRGETQEITPWTGEEAARFLEYL------E 183

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------------GKGD 195
              +     A   L    G+R+ E  +L  Q++   +  + ++                 
Sbjct: 184 KARMRKAYKAFFRLALATGMRLGELQALRWQDVDLKRGEVCVRRTYSEAGKCFHEPKTKK 243

Query: 196 KIRIVPLLPSVRKAILEYY------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
             R +P+ P     + E+        L   +   + +  +F   +G  ++     R +R+
Sbjct: 244 ARRRIPIDPVTTAWLREWRKEQLEERLRAGEGWADREGLVFTTRKGTVVDRDDLLRALRR 303

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
             R  G+P     H LRH+ A+ LL      + +Q  LGH  + TT  +Y+++       
Sbjct: 304 ACREAGVP-GIRFHDLRHTHASLLLRQNVHPKVVQERLGHASVKTTLDLYSHLLPGAQEP 362

Query: 309 WMMEI 313
            +  +
Sbjct: 363 AVRAV 367


>gi|310819252|ref|YP_003951610.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309392324|gb|ADO69783.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 395

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 102/259 (39%), Gaps = 38/259 (14%)

Query: 72  RAFISKRRTQK----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
           RA + KR+       +  +S+   L+ +   L   +++ +        ++  K       
Sbjct: 146 RAALLKRKGSGAVKLLSLKSINNVLTVLHKLLALAQEQGVLQHVP--RVKLFKTDKPAFD 203

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L+ ++A  +        + E +W       ++ +    GLR+ E + L   ++   +  
Sbjct: 204 FLSFEEAERM------SNAAEPEW-----RTLILVALKTGLRLGELIGLQWADLDLQRGK 252

Query: 188 LRIQG----------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
           L ++           KG + R V L  S  +A+  +  LC           +F    G+P
Sbjct: 253 LNVRRTIWRGVVGLPKGGRERTVDLPTSAVEALKAHRHLCGP--------YVFCQTDGRP 304

Query: 238 LNPGVFQRYIRQLRRYLGLPLS---TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           L  G+ +  + +  R  G+         H LRH++ +HL   G  L+ IQ ++GH  +  
Sbjct: 305 LTAGMTKHPLLRALRRAGVSRPEGSIGWHDLRHTYGSHLAMRGVALKVIQELMGHATIEM 364

Query: 295 TQIYTNVNSKNGGDWMMEI 313
           T  Y +++ +     + E+
Sbjct: 365 TMRYAHLSPEARESAVQEL 383


>gi|228477373|ref|ZP_04062009.1| tyrosine recombinase XerC [Streptococcus salivarius SK126]
 gi|228250808|gb|EEK09996.1| tyrosine recombinase XerC [Streptococcus salivarius SK126]
          Length = 356

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 59/323 (18%), Positives = 113/323 (34%), Gaps = 45/323 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEK------ITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  + ++F  +L             I I+T+  L+  ++ +F+   R     
Sbjct: 33  YSFTTLYEYLKEYKRFFDWLIDSGISDADDIASIDIKTLENLTKKDMESFVLYLRERPSL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                 Q +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 93  NTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKVSTKKKKETLAA 152

Query: 120 KKSNSLPRALNEKQALTLVDNVLLH--------TSHETKWIDARNSAILYLLYGCGLRIS 171
           +  N   +     + +  +D V                     R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETMEFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLF 230
           EA++L  ++I      + +  KG K   V +    +  +  Y  +         Q   LF
Sbjct: 213 EAVNLDLKDINLKMMVIDVTRKGGKRDSVNVASFAKPYLETYLSIRDKRYKAEKQDVALF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +  +   +    T H LRH+ AT L         +   L
Sbjct: 273 LTEYRGVPNRIDASSIEKMVAKYSQDFKI--RVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH     T +YT++ +    + +
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNAL 353


>gi|288561749|ref|YP_003429155.1| putative integrase-recombinase [Bacillus pseudofirmus OF4]
 gi|288548381|gb|ADC52263.1| putative integrase-recombinase [Bacillus pseudofirmus OF4]
          Length = 407

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 114/298 (38%), Gaps = 36/298 (12%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITI---QTIRQLSYTEIRAFISKRRT----- 80
           +  +K T + Y  D  QF  FL    E +  +     ++      IR++    +      
Sbjct: 99  KNRTKGTKKEYVRDLLQFFTFLQVTMENENDVPISSYLKGAHKRHIRSYQEWLKNLIRQD 158

Query: 81  --QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN--LKKSNSLPRALNEKQALT 136
             +     +  R  + +KSFL++L    I      +  +    +K     R+L+  +   
Sbjct: 159 GKKGYPSSTRARKTTVVKSFLQWLYDEDIIKHPLPIAFKKSTYRKEERPDRSLSLNEVQD 218

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST------LRI 190
           L++    H           N A+L +L+  GLR++E  +    N+  D S       LR+
Sbjct: 219 LLNYYKDH---------PVNHALLLILFTTGLRVNEVATAKRSNVYYDASVNGGSYFLRV 269

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
             KG+K R   +  +   +I     L     DL+     PLF   +G P +      YI 
Sbjct: 270 TTKGNKRRDARIFNTTMDSIKRMRQLRGLKIDLDPTDDSPLFCTNKGNPYSYKYLSNYII 329

Query: 249 QLRRYLGLPL------STTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYT 299
           ++              + + H  RH F T+ ++  G  +  +Q  +GH   STT+ Y 
Sbjct: 330 RIIGAADFDWLKRKEGNISPHWARHFFVTYSIIQKGIPIDVVQHTVGHSSRSTTEAYI 387


>gi|228982824|ref|ZP_04143083.1| hypothetical protein bthur0002_59570 [Bacillus thuringiensis Bt407]
 gi|228777007|gb|EEM25315.1| hypothetical protein bthur0002_59570 [Bacillus thuringiensis Bt407]
          Length = 388

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 105/279 (37%), Gaps = 24/279 (8%)

Query: 58  ITIQTIRQLSYTEIRAFISKRR----TQKIGDRSL---------KRSLSGIKSFLKYLKK 104
           + + ++R     +   +++       T K  + +           R L+ +  F  YL K
Sbjct: 71  VDLDSLRDRDIIDFMDYLTHYSKTFFTSKGKETTQEFTNTSSGKSRKLATLHKFFGYLFK 130

Query: 105 RKITTESNILNMR-NLKKSNSLPRALNEKQALTLV-----DNVLLHTSHET--KWIDARN 156
           +K  ++     +   +     +   L+             D  + ++  E   K +  R+
Sbjct: 131 QKRLSKDVTAGIEMKVPTKAKIKNRLSPGDIERFFKTIVEDVHIENSRKENFHKKVKFRD 190

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
             ++  +   G+R+SE + L   ++  ++  L +  KG   + +P+   +   + +Y   
Sbjct: 191 YIMVLTMAYTGIRVSELVQLDIDDVYIEKQMLVVIRKGGDEQAIPMPGRILDDLTDYLVE 250

Query: 217 CPF--DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                D+       LF  +  K +N    +  + + R   GL +  T H  R +F T+  
Sbjct: 251 RKKLTDVKKEDAKALFVSLHKKRMNERTVRLMLEKYRVRSGLDIKITPHVFRRTFGTNHY 310

Query: 275 SNGGDLRSIQSILGHFRLSTTQI-YTNVNSKNGGDWMME 312
           +   D+     +LGH    TT+  Y + + +   + M +
Sbjct: 311 NTYQDMYLTAQVLGHGSAETTRRFYADPSQERVSESMKQ 349


>gi|84517223|ref|ZP_01004578.1| Phage integrase [Loktanella vestfoldensis SKA53]
 gi|84508898|gb|EAQ05360.1| Phage integrase [Loktanella vestfoldensis SKA53]
          Length = 401

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 93/257 (36%), Gaps = 22/257 (8%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI----TTESNI 113
              + + +++  ++ +             S+ R L  ++        R        E+  
Sbjct: 136 FGKKHLDEITTEDVLSMQQAGLKAGAAPGSVNRRLILLRYMFN-TAWRDWKIAGVKENPT 194

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
             +R LK++N   R +   +   L   +           +     ++  L   G R +E 
Sbjct: 195 HGVRLLKENNKKERYVRADEMARLYAEICSSQ-------NTMLKHVVAFLLLTGARRNEV 247

Query: 174 LSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
           L  T Q+I       RI   K    R +PL       + +          ++    +F  
Sbjct: 248 LHATWQDINLTTGKWRIPDTKSGYARHLPLNDGAMAVLHQMQ-------GVSRSQYIFGN 300

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
            +       ++       RR  GLP     H LRH+FA+ L++NG  +  +Q +LGH ++
Sbjct: 301 PKTGKPYVHIYY-AWDTARRRAGLP-DVRMHDLRHTFASLLINNGRSIYEVQKLLGHTQI 358

Query: 293 STTQIYTNVNSKNGGDW 309
            TTQ Y ++  +   D 
Sbjct: 359 KTTQRYAHLTQETLLDA 375


>gi|222080175|ref|YP_002540038.1| integrase/recombinase [Agrobacterium vitis S4]
 gi|221738820|gb|ACM39599.1| integrase/recombinase [Agrobacterium vitis S4]
          Length = 408

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 70/300 (23%), Positives = 124/300 (41%), Gaps = 26/300 (8%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P      L+ E   W      +RGL++ TL +Y      F+  L           T    
Sbjct: 114 PAKPVAPLVAEFAAWA---REQRGLAETTLATYLGTITPFIDTLG---------DTPAIY 161

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT---ESNILNMRNLKKSN 123
               IRA++ + R + +    +K    GI++FL++L          +  + N+   + + 
Sbjct: 162 DAATIRAYMIE-RAKAVSVARMKGISVGIRAFLRFLIATGRCRPGLDHAMPNVAGWRLA- 219

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           S+PR L +     ++                R+ AI+ LL   GLR SE   L   +I  
Sbjct: 220 SIPRFLPDADIARIIGAC-------NGERRLRDRAIILLLVRLGLRASEVARLGFGDIDW 272

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
            Q ++R+ GKG +  ++PL   +  A+L Y +     L +   L +      +P++    
Sbjct: 273 RQGSIRLFGKGRREELLPLTQEIGDALLAYIERGRPALAV-PSLFITEYAPLRPIDRITV 331

Query: 244 QRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +  +++  +  G+      AH LRHS AT +L +G  L  + ++L H     T  Y  V+
Sbjct: 332 KCLVKRALKRGGVESHYKGAHILRHSAATAMLRHGVSLAHVGTVLRHRSPEMTAHYAKVD 391


>gi|15675163|ref|NP_269337.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes M1
           GAS]
 gi|21910375|ref|NP_664643.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes
           MGAS315]
 gi|28895951|ref|NP_802301.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes
           SSI-1]
 gi|56807698|ref|ZP_00365575.1| COG0582: Integrase [Streptococcus pyogenes M49 591]
 gi|306827323|ref|ZP_07460610.1| phage integrase family integrase/recombinase [Streptococcus
           pyogenes ATCC 10782]
 gi|54039884|sp|P67635|XERS_STRP3 RecName: Full=Tyrosine recombinase xerS
 gi|54042781|sp|P67634|XERS_STRP1 RecName: Full=Tyrosine recombinase xerS
 gi|229892119|sp|Q1JBN4|XERS_STRPB RecName: Full=Tyrosine recombinase xerS
 gi|229892122|sp|Q1J6H1|XERS_STRPF RecName: Full=Tyrosine recombinase xerS
 gi|13622326|gb|AAK34058.1| putative integrase/recombinase [Streptococcus pyogenes M1 GAS]
 gi|21904572|gb|AAM79446.1| putative integrase/recombinase (phage integrase family)
           [Streptococcus pyogenes MGAS315]
 gi|28811201|dbj|BAC64134.1| putative integrase/recombinase [Streptococcus pyogenes SSI-1]
 gi|304430470|gb|EFM33492.1| phage integrase family integrase/recombinase [Streptococcus
           pyogenes ATCC 10782]
          Length = 356

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 66/323 (20%), Positives = 118/323 (36%), Gaps = 45/323 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  + ++F  +L             I + T+  L+  ++ AF+   R     
Sbjct: 33  YSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLEAFVLYLRERPSL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-------- 126
                 + +   ++ R+LS + S  KYL +     +      RN+ K  S          
Sbjct: 93  NTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAS 152

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDA---------------RNSAILYLLYGCGLRIS 171
           RA N KQ L L D  L    +  K  +                R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLF 230
           EA++L  +++  +   + +  KG K   V +    +  +  Y  +         Q L  F
Sbjct: 213 EAVNLDLKDVNLNMMIIEVIRKGGKRDSVNVAGFAKGYLESYLAVRQRRYKAEKQDLAFF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +      +    T H LRH+ AT L         +   L
Sbjct: 273 LTEYRGVPNRMDASSIEKMVGKYSEDFKI--RVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH     T +YT++ +    + +
Sbjct: 331 GHSSTQVTDLYTHIVNDEQKNAL 353


>gi|149916304|ref|ZP_01904824.1| site-specific recombinase, phage integrase family protein
           [Roseobacter sp. AzwK-3b]
 gi|149809758|gb|EDM69610.1| site-specific recombinase, phage integrase family protein
           [Roseobacter sp. AzwK-3b]
          Length = 363

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 105/278 (37%), Gaps = 10/278 (3%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           Q+Y  ++   +         +   + +  +   ++R    + +       S+ R++  ++
Sbjct: 84  QTYRRNSTNIVQLYRSTYHIRYGHRHLHTICQDDLRKLTKEMQDLGYAPGSVNRTVVILR 143

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
             L+           + L     K  N LP     ++ L+  +   L    + +     N
Sbjct: 144 GMLRRADDWGYCKIHSSLQ----KPPNLLPDHPRHERFLSREEAQRLQAVLQRRGATPVN 199

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEY-- 213
            AIL+LLY  G R SE L+    ++   +   RI   K  + R V L       + +   
Sbjct: 200 LAILFLLY-TGARRSEVLNADWAHVDFARQEWRIPISKNGRPRTVILSDRAVDILEQARA 258

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
           Y    F         +F   +             +++R    L      H LRHS+A+ L
Sbjct: 259 YQQRHFVKQARSVSTVFANPQT-RQPYHNIWETWKRVRAEADLT-DVRLHDLRHSYASTL 316

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           ++ G  +  +Q +LGH  ++TTQ Y ++ S+   + + 
Sbjct: 317 INAGVSIYEVQKLLGHTNITTTQRYAHLASERLHETVK 354


>gi|171057466|ref|YP_001789815.1| integrase family protein [Leptothrix cholodnii SP-6]
 gi|170774911|gb|ACB33050.1| integrase family protein [Leptothrix cholodnii SP-6]
          Length = 425

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 54/298 (18%), Positives = 112/298 (37%), Gaps = 15/298 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            S  + +E   +  ++   RGL+  T      D    +  L         I  I  L   
Sbjct: 126 PSGPVAEELTRYNVHMRDARGLAIGT----RGDRLACISLLLQCKVAGKAI-AIGALQPE 180

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPR 127
           ++R F++   T+           + ++++ +Y           +  + +  +    SLPR
Sbjct: 181 DVRGFMATELTRVSSASHASAVTAALRAYFRYRGTCGDAVNGLLGAISSPVRWSQASLPR 240

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           AL  ++   L  +         + +     A++ L    GLR+ E   L   +      T
Sbjct: 241 ALTAEEVQRLEAHCAQAKRAPLRLL-----AMVRLALDLGLRVGEIAKLEITDFDWRAGT 295

Query: 188 LRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           + + + K  +  ++PL     +A+ EY         L            +P+      + 
Sbjct: 296 VTLKRTKSQRQDVLPLPAVTGQALSEYMRHERPATTLPSLFVRRVAPHDRPIGVDTVSQA 355

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           I +  R  G+    + H+LRH+ A  L+++G  ++ +  +L H  L T+ IY  ++ +
Sbjct: 356 IGRALRGAGISR--SCHSLRHTLACRLVNSGSSIKEVADVLRHRSLDTSLIYAKLDLQ 411


>gi|322372958|ref|ZP_08047494.1| site-specific recombinase, phage integrase family [Streptococcus
           sp. C150]
 gi|321278000|gb|EFX55069.1| site-specific recombinase, phage integrase family [Streptococcus
           sp. C150]
          Length = 356

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 68/323 (21%), Positives = 120/323 (37%), Gaps = 45/323 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEK------ITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  + ++F  +L             I I+T+  L+  ++ +F+   R     
Sbjct: 33  YSFTTLYEYLKEYKRFFDWLIDSGISDADEIASIDIKTLENLTKKDMESFVLYLRERPSL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-------- 126
                 Q +   ++ R+LS + S  KYL +     +      RN+ K  S          
Sbjct: 93  NTYSTKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKVSTKKKKETLAA 152

Query: 127 RALNEKQALTLVDNVLLHTSHETKWID---------------ARNSAILYLLYGCGLRIS 171
           RA N KQ L L D  +    +  K  +                R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETMEFLDYVEKEYEVKLSNRAKSSFYKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLF 230
           EA++L  ++I      + +  KG K   V +    +  +  Y  +         Q L LF
Sbjct: 213 EAVNLDLKDINLKMMVIDVTRKGGKRDSVNVASFAKPYLESYLSIRDKRYKAEKQDLALF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +  +   +    T H LRH+ AT L         +   L
Sbjct: 273 LTEYRGVPNRIDASSIEKMVAKYSQDFKI--RVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH     T +YT++ +    + +
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNAL 353


>gi|302038834|ref|YP_003799156.1| putative phage integrase [Candidatus Nitrospira defluvii]
 gi|300606898|emb|CBK43231.1| putative Phage integrase [Candidatus Nitrospira defluvii]
          Length = 361

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/308 (17%), Positives = 122/308 (39%), Gaps = 23/308 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKL-TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           L +E + + + +  ER +++  TL++ +   R        +       + + ++S  ++ 
Sbjct: 53  LEEENRTFQEMM--ERYVAERATLKAPKSRLRDQAAL--NHLLPVFGQKLLSEISPKQLA 108

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKSNSLPRALNE 131
           ++ ++RR ++    ++ + L  ++       +  +   E+ +  +   +  N + R L  
Sbjct: 109 SYKAQRRIEQAAPATINKELQLVRHAFNLAMREWEWCRENPMHRVSLEQVRNEVDRWLTP 168

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           ++   L+                    I+      G+R  E L+L  Q++   + TL + 
Sbjct: 169 EEEDRLM-----------AASSPWLREIIVFALNTGMRQGEILNLQWQDVDFSRGTLIVM 217

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
              +  R    L +    +L              + P+F+   G  L      R   + R
Sbjct: 218 QSKNGTRRTIPLNTKVYELLASKQAATGL----SRGPVFKTPLGNLLQVRFLVREFCEAR 273

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+P     H +RH+FAT L+  G DL  +Q +LGH     TQ Y + + ++  + + 
Sbjct: 274 NRAGIP-DFRFHDMRHTFATRLVQRGVDLYKVQRLLGHKTNLMTQRYAHHSPESLREGVK 332

Query: 312 EIYDQTHP 319
            + D+  P
Sbjct: 333 -VLDECQP 339


>gi|254931488|ref|ZP_05264847.1| transposase A [Listeria monocytogenes HPB2262]
 gi|293583040|gb|EFF95072.1| transposase A [Listeria monocytogenes HPB2262]
          Length = 361

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 72/350 (20%), Positives = 134/350 (38%), Gaps = 69/350 (19%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           FE+++  + +++ L+   G +  T+++Y    + F  F++           +  L + E+
Sbjct: 23  FEVIEPVKRFIKYLDNT-GKAPNTIKTYCYHLKLFYEFMSQRGI------GLEDLKFEEM 75

Query: 72  RAFISKRRT--------------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI---- 113
             F+   R                K  + S+   L+ I SFL+YL + +     ++    
Sbjct: 76  SNFVGWLRNPTGDVKVITLQPKKAKREETSVNAILNAITSFLEYLNRTEDFKAIDMTKEA 135

Query: 114 -------------------LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
                               N+  L+    L + L  +Q   ++D               
Sbjct: 136 RGRNFKGFLHHISKGKSYKKNILKLRVKKKLVQVLEHEQVKAIIDAC----------HTK 185

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----------KGDKIRIVPLLP 204
           R+  ++ L+Y  GLRI E LSL  ++I    + + I            K  K R + +  
Sbjct: 186 RDKLLIMLMYEGGLRIGEVLSLRIEDISTWDNLINITPRDHNENGAYIKLRKERTIDVSK 245

Query: 205 SVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            +     +Y      +   +  I + L     GKPL        IR+L +  G+    TA
Sbjct: 246 ELMALYTDYLVHEYGEDLEHDYIFINLKESYFGKPLKYQSVLDLIRRLGKRTGITF--TA 303

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMM 311
           H LRH+ AT L+ +G D   +Q  LGH  + TT   Y +++ ++  +   
Sbjct: 304 HMLRHTHATELIRSGWDAAYVQKRLGHAHVQTTLDTYVHLSDQDMKNEYK 353


>gi|258438228|ref|ZP_05689512.1| transposase B [Staphylococcus aureus A9299]
 gi|58577495|emb|CAG29648.1| transposase B [Staphylococcus lentus]
 gi|124001376|emb|CAL64014.1| transposase B [Staphylococcus warneri]
 gi|257848272|gb|EEV72263.1| transposase B [Staphylococcus aureus A9299]
          Length = 639

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 107/279 (38%), Gaps = 23/279 (8%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102
            ++F  F+    E    IQ I QL+  EI  + +    + +   ++   +S +  F   +
Sbjct: 250 LKEFFNFMNKNCE---GIQRIHQLTRNEIEQYFNYINLKGLKPSTVTGRISTLDVFFTTI 306

Query: 103 KKRKITTESNILNM---RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           ++       + + +      K   +LPR ++E        ++L   + +   ++   + +
Sbjct: 307 QRYDWKDTPSKILIFQEDYPKVPKALPRYIDE--------HILEQLNGKLDKLEPYIATM 358

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           + +L  CG+RISE  +L   +++ D+     L+      K   +  +     A++   + 
Sbjct: 359 VMVLQECGMRISELCTLKKGSVITDKEGDCFLKYYQWKMKKEHIIPISKEIAALILVQEQ 418

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP------LSTTAHTLRHSFA 270
              D   +  + +F      PL    F+  + +L     +           AH  RH+  
Sbjct: 419 RVADELDDGCVYVFPRKDCSPLKQDTFRVKLNELAYEEKITDSNGEIFRFHAHAFRHTVG 478

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           T +++NG     +Q  LGH     T  Y ++  +     
Sbjct: 479 TRMINNGVPQHIVQKFLGHESPEMTARYAHIFDETLKKE 517


>gi|227529280|ref|ZP_03959329.1| site-specific tyrosine recombinase XerS [Lactobacillus vaginalis
           ATCC 49540]
 gi|227350811|gb|EEJ41102.1| site-specific tyrosine recombinase XerS [Lactobacillus vaginalis
           ATCC 49540]
          Length = 355

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 68/358 (18%), Positives = 135/358 (37%), Gaps = 44/358 (12%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYT 54
           ME +    ++  EL  +  +++ +  +    +  T   Y  + R+F  +L          
Sbjct: 1   MESDKYLSLIQQEL-AQLPDYVNDYYLGTNHAVTTTYQYLTEIRRFFNWLRASGLSEANN 59

Query: 55  EEKITIQTIRQLSYTEIRAFISKR----RTQKI--GDRSLKRSLSGIKSFLKY------- 101
             +I    + +L   +I  +I         Q       S+ RS++ ++S  KY       
Sbjct: 60  NTEIQTDELAKLRRNDIMLYIDHLSHTTNAQGHLNSPTSINRSINALRSLFKYLTVTADV 119

Query: 102 LKKRKITTESNILNMRNL-------KKSNSLPRALNEKQAL---------TLVDNVLLHT 145
                    + +L + +L        ++++L   +   +                     
Sbjct: 120 NDGEPYFYRNVMLKIDSLNDTKTLNYRAHTLASHMYRGEMKFDFIDFISNQYPQMCDKRA 179

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
               K    R+ AI+ L+ G G+R+SEA ++   ++   QS L +  KG +   VP+ P 
Sbjct: 180 LPAYKVNKERDIAIITLILGTGVRVSEAANVNLADLNLKQSLLDVVRKGGQKDSVPIAPW 239

Query: 206 VRKAILEYYDLCPFDLN-LNIQLPLFRGIRG---KPLNPGVFQRYIRQLRRYLGLPLSTT 261
             + I  Y ++     + L     LF  +     + +     ++ +++     G P   T
Sbjct: 240 AVQYIKAYLEIRAKRYHALKKDTALFLTLYHGETRRMTANAIEKMVKKYSTAFGHP--LT 297

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            H LRH+ A+ + +   D   +   LG    S T +YT+V+ K     + EI +  HP
Sbjct: 298 PHKLRHTLASEMYNVTKDQVLVAQQLGQKGTSATDLYTHVDQKKQRQALDEISE--HP 353


>gi|83749979|ref|ZP_00946929.1| Hypothetical Protein RRSL_00056 [Ralstonia solanacearum UW551]
 gi|83723354|gb|EAP70582.1| Hypothetical Protein RRSL_00056 [Ralstonia solanacearum UW551]
          Length = 566

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 69/330 (20%), Positives = 121/330 (36%), Gaps = 42/330 (12%)

Query: 16  KERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           KE +  +    IERG  LS LT +    D   +  FL   +  +  +   R  +  + R 
Sbjct: 245 KEAERLILWAIIERGRPLSSLTTE----DAIAYRGFLRHPSPHERWVGPARPRASADWRP 300

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F     T  +  RS+  SLS + +  ++L +++    +    ++      +   AL+   
Sbjct: 301 F-----TDGLSARSIAYSLSVLGAMFRWLVQQRYVLANPFAGIKVRGGGRT--AALDASH 353

Query: 134 ALTLVDNVLLHT-SHETKWIDARN-------SAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           A T  +  L+ T +   +W              +L   Y  GLR SE +      +  D+
Sbjct: 354 AFTEGEWALVRTIADGLEWSYGWEAPAAQRLRFVLDFAYATGLRASELIGARLSGVETDR 413

Query: 186 ---STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-- 240
                L + GKG +   V L P  R A+  Y       +      P    I    L+P  
Sbjct: 414 QGDHWLSLIGKGGRAGKVALPPLARTALDRYLVERGLPVTRARWNPQTPLIGALGLDPDG 473

Query: 241 --------GVFQRYIRQLRR--------YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
                    V +R+                      + H +RH+ A+H L+ G +L +++
Sbjct: 474 GITGSRLWSVVRRFFWAAADIIEGDHTVLAEKLRKASPHWMRHTHASHALARGAELTTVR 533

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
             L H  +STT IY + +       +   +
Sbjct: 534 DNLRHASISTTSIYLHGDDVKRARQIEAAF 563


>gi|297566460|ref|YP_003685432.1| integrase family protein [Meiothermus silvanus DSM 9946]
 gi|296850909|gb|ADH63924.1| integrase family protein [Meiothermus silvanus DSM 9946]
          Length = 353

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/312 (21%), Positives = 122/312 (39%), Gaps = 35/312 (11%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-------- 82
           LS  TL++Y    R FL + A+  +       I + +  ++  +I+  +T+         
Sbjct: 48  LSPKTLETYRLGVRDFLAW-AWPPDAPAPQVQILKATADDLDRYIADLQTEGSHLVGRVL 106

Query: 83  ------------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
                       +   S+   L+G+++  K L+     T    + +R  +     P    
Sbjct: 107 EYRRQPGANGPSLKPSSIATYLAGVRALYKALEWADAATL--PMGVRAPRDPT--PAYER 162

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
                  +   LL      +    R+   + L+   GLRISE + L  Q+I   +  L +
Sbjct: 163 RPALPVSLYRHLLAHLETGEPHHRRDRIAVRLMAEAGLRISEVVHLQVQDIHLAERLLEV 222

Query: 191 -QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF----RGIRGKPLNPGVFQR 245
            +GKG K R VPL  S+   + ++  +            L     R   G+ +     + 
Sbjct: 223 KRGKGSKSRSVPLSKSLVAELQDWLRIRLAHAAAGEGRVLVNLGGRKADGRGMTVRGLRE 282

Query: 246 YIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            + +  R LG P   + AH LRH+  T       DL +   +LGH  ++T+ IY  ++ +
Sbjct: 283 ILNRHYRTLGFPARYSGAHLLRHTAGTRFYQVSRDLHATARLLGHSNINTSAIYAKMDLQ 342

Query: 305 NGGDWMMEIYDQ 316
                + E+ D+
Sbjct: 343 ----GLFEVVDK 350


>gi|257062249|ref|YP_003142307.1| integrase family protein [Cyanothece sp. PCC 8802]
 gi|256592509|gb|ACV03359.1| integrase family protein [Cyanothece sp. PCC 8802]
          Length = 316

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/275 (22%), Positives = 122/275 (44%), Gaps = 15/275 (5%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           LS  ++ + +         L     + +T+    +L Y    A I +   Q+    +  +
Sbjct: 33  LSPGSVITMKQSLDVMASLLTEGDCDAMTL-DWAKLRYHH-TATIRRELKQRYSATTTNK 90

Query: 91  SLSGIKSFLKYLKKRKITTESN---ILNMRNLKKSNSLP-RALNEKQALTLVDNVLLHTS 146
            L  ++  L+   +  +   ++    +++ ++K    L  RAL   +   L+   L    
Sbjct: 91  MLCALRRVLEEALRLDLMEAADYAKAVDLPSVKGKKRLRGRALTALEIEGLMSVCL---- 146

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPS 205
            ++  +  R+ A++ +L G GLR +E ++L  ++   D   L ++G KGDK R V L  S
Sbjct: 147 KDSSVLGVRDLALMGILRGTGLRRAELVALEVKDFTSDGGVLEVRGGKGDKDRTVYLPES 206

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           V   + ++ ++     +  +  P+ +G R   + LNP    + +++     G+  S + H
Sbjct: 207 VIGLVEDWLEVR-GAFSGALLCPIRKGGRVEQRHLNPDAVLKIVKKRALEAGIE-SFSPH 264

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             R +F + LL  G DL ++Q + GH    TT  Y
Sbjct: 265 DFRRTFCSDLLDAGVDLVTVQKLAGHASPETTAKY 299


>gi|126699541|ref|YP_001088438.1| putative tyrosine recombinase [Clostridium difficile 630]
 gi|254975527|ref|ZP_05271999.1| putative tyrosine recombinase [Clostridium difficile QCD-66c26]
 gi|255092915|ref|ZP_05322393.1| putative tyrosine recombinase [Clostridium difficile CIP 107932]
 gi|255306925|ref|ZP_05351096.1| putative tyrosine recombinase [Clostridium difficile ATCC 43255]
 gi|255314656|ref|ZP_05356239.1| putative tyrosine recombinase [Clostridium difficile QCD-76w55]
 gi|255517330|ref|ZP_05385006.1| putative tyrosine recombinase [Clostridium difficile QCD-97b34]
 gi|255650436|ref|ZP_05397338.1| putative tyrosine recombinase [Clostridium difficile QCD-37x79]
 gi|260683548|ref|YP_003214833.1| putative tyrosine recombinase [Clostridium difficile CD196]
 gi|260687208|ref|YP_003218342.1| putative tyrosine recombinase [Clostridium difficile R20291]
 gi|306520413|ref|ZP_07406760.1| putative tyrosine recombinase [Clostridium difficile QCD-32g58]
 gi|115250978|emb|CAJ68807.1| putative phage integrase [Clostridium difficile]
 gi|260209711|emb|CBA63463.1| putative tyrosine recombinase [Clostridium difficile CD196]
 gi|260213225|emb|CBE04727.1| putative tyrosine recombinase [Clostridium difficile R20291]
          Length = 375

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/318 (19%), Positives = 118/318 (37%), Gaps = 42/318 (13%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-------EKITIQTIRQLSYTEI 71
           +++   L+    ++  T  +Y  D   F  +L    E       + IT      +   +I
Sbjct: 43  KDYFIYLKG--SVAVSTRLAYLEDINFFCSYLIETKELTNADCVKDITEDDFNTIKSRDI 100

Query: 72  RAFISKRRTQKIGD------------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
             F+    ++   +            R+L R  S I +  K+L +      +       +
Sbjct: 101 NLFLGDYCSRYYKNTEKNTLIFENNNRALARKKSSISTLFKFLYRNSQIDNNITDGFNPI 160

Query: 120 KKSNSLP---RALNEKQALTLVDNVLLHTSHETKWIDAR------NSAILYLLYGCGLRI 170
           K     P   + L   +   ++++V        K           + AIL L    GLR+
Sbjct: 161 KLPKPQPDAIKRLEIDEVAKMLESVETGEGLTEKEKVYWRKTKLRDKAILALFVTYGLRL 220

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL---CPFDLNLNIQL 227
           +E   L   +    +   +I  K  K  ++P+  +    I +Y          LN   + 
Sbjct: 221 NELRELNISSFNFSRGEFKIYRKRGKEVLMPINHTCEHVIKDYLQNERTRDELLNDEEKD 280

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT------AHTLRHSFATHLLSNGGDLR 281
            LF  ++ K +     +  ++   +Y  +PL TT       H LR + AT L+  G  + 
Sbjct: 281 ALFLSLQNKRITAKAIRTLVK---KYTSIPLDTTRDNGYSPHKLRATAATSLIQTGFSIY 337

Query: 282 SIQSILGHFRLSTTQIYT 299
            +Q++L H  ++TTQ+Y 
Sbjct: 338 DVQNLLDHDNVTTTQLYA 355


>gi|77412001|ref|ZP_00788330.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae CJB111]
 gi|77161957|gb|EAO72939.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae CJB111]
          Length = 356

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/353 (18%), Positives = 133/353 (37%), Gaps = 50/353 (14%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYTEEK 57
           + L EI+ + +L+  Q+ L         S  TL  Y  + R+FL +L        +   +
Sbjct: 11  DELKEIMPWYVLEYYQSKLSVP-----YSFTTLYEYLKEYRRFLEWLLDSGVANCHHIAE 65

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQ----------KIGDRSLKRSLSGIKSFLKYLKKRKI 107
           I +  +  L+  ++ AFI   R +           +   ++ R+LS + S  KYL +   
Sbjct: 66  IELSVLENLTKKDMEAFILYLRERPLLNANTRQNGVSQTTINRTLSALSSLFKYLTEEVE 125

Query: 108 TTESNILNMRNL---------------KKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +      RN+               +  N   +     + +  ++ +     ++    
Sbjct: 126 NADGEPYFYRNVMKKVSTKKKKETLASRAENIKQKLFLGNETIEFLEYINCEYQNKLSKR 185

Query: 153 DA--------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
                     R+ AI+ LL   G+R+SEA++L  ++I  +   + +  KG K   V +  
Sbjct: 186 ALAFFNKNKERDLAIIALLLASGVRLSEAVNLDLKDINLNVMVIDVTRKGGKRDSVNVAS 245

Query: 205 SVRKAILEYYDLCPFDLNL-NIQLPLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLST 260
             +  +  Y D+        N  + LF          ++    ++ + +  +     +  
Sbjct: 246 FAKPYLANYLDIRKNRYKAENQDIALFLSEYRGVPNRIDASSVEKMVAKYSQ--DFKVRV 303

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           T H LRH+ AT L         +   LGH     T +YT++ +    + + ++
Sbjct: 304 TPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL 356


>gi|312862667|ref|ZP_07722907.1| site-specific tyrosine recombinase XerS [Streptococcus vestibularis
           F0396]
 gi|311101527|gb|EFQ59730.1| site-specific tyrosine recombinase XerS [Streptococcus vestibularis
           F0396]
          Length = 356

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/323 (18%), Positives = 115/323 (35%), Gaps = 45/323 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEK------ITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  + ++F  +L             I I+T+  L+  ++ +F+   R     
Sbjct: 33  YSFTTLYEYLKEYKRFFDWLIDSDISDTDDIASIDIKTLENLTKKDMESFVLYLRERPSL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                 Q +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 93  NTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKVSTKKKKETLAA 152

Query: 120 KKSNSLPRALNEKQALTLVDNVLLH--------TSHETKWIDARNSAILYLLYGCGLRIS 171
           +  N   +     + +  +D V                     R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETMDFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLF 230
           EA++L  ++I      + +  KG K   V +    R  +  Y ++         Q L LF
Sbjct: 213 EAVNLDLKDINLKMMVIDVTRKGGKRDSVNVASFARPYLENYLNIRDKRYKAEKQDLALF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +  +   +    T H LRH+ AT L         +   L
Sbjct: 273 LTEYRGVPNRIDASSIEKMVAKYSQDFKI--RVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH     T +YT++ +    + +
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNAL 353


>gi|229599881|ref|YP_002860872.1| integrase/recombinase XerD [Clostridium botulinum Ba4 str. 657]
 gi|229260405|gb|ACQ51441.1| integrase/recombinase XerD [Clostridium botulinum Ba4 str. 657]
          Length = 212

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 94/232 (40%), Gaps = 25/232 (10%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNEKQALTLVDN 140
           +  +S+ R L+ I    K          +  +  + +K+     L   L   +   +++ 
Sbjct: 1   MKAKSINRKLTSINQLFKS------ININYGVKCKRMKEQKQTFLDDVLTRDEIEKMLNK 54

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                       + R+ AI+  LY  GLR+SE L L  ++I   + ++ I+GKG K R +
Sbjct: 55  C---------GTNIRDKAIIMTLYKTGLRVSELLQLRIRDI--RKKSIEIEGKGGKYRYI 103

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-S 259
            +   +++  L+Y  +            LF G  G+ ++     R I++      +    
Sbjct: 104 IVPKELKEIWLQYLKVR----KPVETDKLFVGTNGE-MHRHNINRIIKKYAVQARITKGK 158

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              H LRHSF   L      +  I  + GH  L+TT+IYT    K   + + 
Sbjct: 159 AHPHALRHSFCKALAIQNVGIEVIADLAGHEDLNTTRIYTRQTQKELREKIE 210


>gi|255655885|ref|ZP_05401294.1| putative tyrosine recombinase [Clostridium difficile QCD-23m63]
 gi|296450693|ref|ZP_06892446.1| phage integrase family site-specific recombinase [Clostridium
           difficile NAP08]
 gi|296879190|ref|ZP_06903185.1| phage integrase family site-specific recombinase [Clostridium
           difficile NAP07]
 gi|296260537|gb|EFH07379.1| phage integrase family site-specific recombinase [Clostridium
           difficile NAP08]
 gi|296429733|gb|EFH15585.1| phage integrase family site-specific recombinase [Clostridium
           difficile NAP07]
          Length = 375

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/318 (19%), Positives = 118/318 (37%), Gaps = 42/318 (13%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-------EKITIQTIRQLSYTEI 71
           +++   L+    ++  T  +Y  D   F  +L    E       + IT      +   +I
Sbjct: 43  KDYFIYLKG--SVAVSTRLAYLEDINFFCSYLIETKELTNAECIKDITEDDFNTIKSRDI 100

Query: 72  RAFISKRRTQKIGD------------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
             F+    ++   +            R+L R  S I +  K+L +      +       +
Sbjct: 101 NLFLGDYCSRYYKNTEKNTLIFENNNRALARKKSSISTLFKFLYRNSQIDNNITDGFNPI 160

Query: 120 KKSNSLP---RALNEKQALTLVDNVLLHTSHETKWIDAR------NSAILYLLYGCGLRI 170
           K     P   + L   +   ++++V        K           + AIL L    GLR+
Sbjct: 161 KLPKPQPDAIKRLEIDEVAKMLESVETGEGLTEKEKVYWRKTKLRDKAILALFVTYGLRL 220

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL---CPFDLNLNIQL 227
           +E   L   +    +   +I  K  K  ++P+  +    I +Y          LN   + 
Sbjct: 221 NELRELNISSFNFSRGEFKIYRKRGKEVLMPINHTCEHVIKDYLQNERTRDELLNDEEKD 280

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT------AHTLRHSFATHLLSNGGDLR 281
            LF  ++ K +     +  ++   +Y  +PL TT       H LR + AT L+  G  + 
Sbjct: 281 ALFLSLQNKRITAKAIRTLVK---KYTSIPLDTTRENGYSPHKLRATAATSLIQTGFSIY 337

Query: 282 SIQSILGHFRLSTTQIYT 299
            +Q++L H  ++TTQ+Y 
Sbjct: 338 DVQNLLDHDNVTTTQLYA 355


>gi|255316601|ref|ZP_05358184.1| integrase/recombinase, putative [Clostridium difficile QCD-76w55]
          Length = 269

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 127/294 (43%), Gaps = 37/294 (12%)

Query: 25  LEIER---GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           LE E+    LSK T  +Y+ D +QFL     Y  + I    +++     I  +       
Sbjct: 8   LEFEKSIQQLSKNTKYNYKLDIKQFL---NIYGHQDINKALLKKYKDEIIENY------- 57

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
               +++ R ++ + ++L++   + I     +  ++N      +   L  ++   +++  
Sbjct: 58  --SIKTVNRKINSLNAYLRF---KNINMHVPVAKIQN---QTFIDDMLTNEEVRLMLNKS 109

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           +       +  D R  AI+  L+  G R+SE L    ++I  D+  + I+GKG K R + 
Sbjct: 110 I-------ELNDLRAKAIMLGLFYTGARVSELLQFKVKSIQKDE--IMIKGKGSKYRKIL 160

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLST 260
           +   +  A  EY D    +  ++    LF G RG  L+     R +++      +   S 
Sbjct: 161 IPSVLNNAFQEYVD----NERVDNTQFLFSGQRGV-LSRSEVFRILKKYALLANINEDSV 215

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
             H  RH F  +L   G    +I+ +LGH  LSTT IY  ++ +   + +  I+
Sbjct: 216 YPHAFRHLFTKNLDKKGVSYSAIKQLLGHA-LSTTDIYMQLSKRELLEEINSIH 268


>gi|78184009|ref|YP_376444.1| site-specific recombinase XerD-like [Synechococcus sp. CC9902]
 gi|78168303|gb|ABB25400.1| Site-specific recombinase XerD-like [Synechococcus sp. CC9902]
          Length = 291

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 60/288 (20%), Positives = 105/288 (36%), Gaps = 28/288 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ----KIGDRS 87
           S+ T   Y  D R    +   +  + +    IR+L    ++ +I   R Q    +I  R+
Sbjct: 15  SQETRDGYMRDLRHLTRWRDRHYPDLL----IRELDPPMVQNWIDDLRGQVDAGEIKPRT 70

Query: 88  LKRSLSGIKSFLKY-----LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
             R LS + +  ++              + +    +L       +A++E     L+   +
Sbjct: 71  FNRRLSVVSALFRWASEPSRSGVTGIGRNPVPGKSHLVGGKE-GKAMSEDDLSKLL--GV 127

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQGKGDKIRIV 200
           + +S +    + R+  ++   Y  G R+SE   L   +   + D   + + GKG K R V
Sbjct: 128 VASSRDRSARNNRDFVLIRGSYLLGARVSEVARLQWCDVEPLADGGQIHLLGKGSKARTV 187

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRRYLGLPLS 259
            +     +       L            LF   R K  L        +R+     G+   
Sbjct: 188 RVSADTLQ-------LFESLGRAGESDYLFPSSRTKSHLTRQAINYTMRKWGEKAGVD-- 238

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
              H LRHS ATH +  G ++  +Q  LGH    TT  Y   N  +  
Sbjct: 239 VHPHKLRHSHATHAIRRGTNVFCLQHTLGHSSTDTTSGYVKQNPDDSS 286


>gi|312278360|gb|ADQ63017.1| Tyrosine recombinase xerS [Streptococcus thermophilus ND03]
          Length = 356

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 63/324 (19%), Positives = 117/324 (36%), Gaps = 47/324 (14%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEK------ITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  + ++F  +L             I I+T+  L+  ++ +F+   R     
Sbjct: 33  YSFTTLYEYLKEYKRFFNWLIDSGISDADDIASIHIKTLENLTKKDMESFVLYLRERPSL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKR--------------------KITTESNIL 114
                 Q +   ++ R+LS + S  KYL +                     K   E+   
Sbjct: 93  NTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKISTKKKKETLAA 152

Query: 115 NMRNLKKSNSL----PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
              N+K+   L     + L+  +    V       S   K  + R+ AI+ LL   G+R+
Sbjct: 153 RAENIKQKLFLGDETMKFLDYVENEYEVKLSNRAKSSFYKNKE-RDLAIIALLLSSGVRL 211

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PL 229
           SEA++L  ++I      + +  KG +   V +    R  +  Y  +         Q   L
Sbjct: 212 SEAVNLDLKDINLKMMVIDVTRKGGQRDSVNMASFARPYLENYLSIRNKRYKAEKQDVAL 271

Query: 230 FRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           F          ++    ++ + +  +   +    T H LRH+ AT L         +   
Sbjct: 272 FLTEYRGVPNRIDASSIEKMVAKYSQDFKI--RVTPHKLRHTLATRLYDATKSQVLVSHQ 329

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWM 310
           LGH     T +YT++ +    + +
Sbjct: 330 LGHASTQVTDLYTHIVNDEQKNAL 353


>gi|19746130|ref|NP_607266.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes
           MGAS8232]
 gi|34222913|sp|Q8P0Y8|XERS_STRP8 RecName: Full=Tyrosine recombinase xerS
 gi|19748306|gb|AAL97765.1| putative integrase/recombinase [Streptococcus pyogenes MGAS8232]
          Length = 356

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/323 (20%), Positives = 118/323 (36%), Gaps = 45/323 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  + ++F  +L             I + T+  L+  ++ AF+   R     
Sbjct: 33  YSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLEAFVLYLRERPSL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-------- 126
                 + +   ++ R+LS + S  KYL +     +      RN+ K  S          
Sbjct: 93  NTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAS 152

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDA---------------RNSAILYLLYGCGLRIS 171
           RA N KQ L L D  L    +  K  +                R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLF 230
           EA++L  +++  +   + +  KG K   V +    +  +  Y  +         Q L  F
Sbjct: 213 EAVNLDLKDVNLNMMIIEVIRKGGKRDSVNVAGFAKGYLESYLAVRQRRYKAEKQDLAFF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +      +    T H LRH+ AT L         +   L
Sbjct: 273 LTEYRGVPNRMDASSIEKMVGKYSEDFKI--RVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH     T +YT++ +    + +
Sbjct: 331 GHSSTQVTDLYTHIVNDEQKNAL 353


>gi|139438848|ref|ZP_01772308.1| Hypothetical protein COLAER_01312 [Collinsella aerofaciens ATCC
           25986]
 gi|133775559|gb|EBA39379.1| Hypothetical protein COLAER_01312 [Collinsella aerofaciens ATCC
           25986]
          Length = 264

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 109/298 (36%), Gaps = 41/298 (13%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++Q L+ E+G ++ T+ SY     Q              I   + L+   + A      +
Sbjct: 4   FVQYLQ-EKGYAENTVDSYSFAICQL-------------IDKTQSLTNQSLLAHKEWLVS 49

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNEKQALTLV 138
                +++   +  I ++L ++    I        ++ ++      L   ++ +Q + L+
Sbjct: 50  S-FAPKTVNNRIGAINTYLDFIAFDGI-------RLKGVRIQQKPFLDNVISNEQYMQLI 101

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             +           D     I+  L   G R+SE      +++      + I  KG K+R
Sbjct: 102 SGLKQDG-------DWFWYFIVRFLGCTGARVSELRQFKVEHV--TAGYMDIVSKGQKLR 152

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            + +  S+R+  L +       L       LF G     +        +++     G+  
Sbjct: 153 RIWIPDSLREESLTWKAKPMNGL-------LFPGKNDNAITSRGISVGLKRAALRYGVDQ 205

Query: 259 ST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                H+ RH FA + ++   D+  +  ++GH  + TT+IY    +      + E  +
Sbjct: 206 DVVYPHSFRHLFAKNFINRNPDISLLADLMGHESIETTRIYLRRTADEQRAAVDEAVN 263


>gi|301166099|emb|CBW25674.1| putative integrase [Bacteriovorax marinus SJ]
          Length = 399

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 116/297 (39%), Gaps = 42/297 (14%)

Query: 30  GLSKLTLQSYECDTR-QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
             +K T Q+Y  D R   L  L     + I  Q  R L  + I              R++
Sbjct: 125 RKAKKTQQAYVSDLRNHILPILGEIQLKHIRYQHARLLENSIIET--------GKSARTV 176

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            + +   K+ L    K +   +S +     L++        ++++    +D         
Sbjct: 177 NKVMMEFKTILNDAVKLEYLLKSPVRGYPELQEEPRHLTFWSKEEIRVFIDF-------- 228

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-----------KGDKI 197
            K     +  I+ L    GLR+ E   L    +    + L I             K  + 
Sbjct: 229 NKANPLLDLYIVAL--NTGLRLGEICGLCWDRVDFTTNNLVINRSLTRDGIRNTTKTHRG 286

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGL 256
           R VP+   VR  + +        L   I   +F    GKPL    V QR+ ++ +R  GL
Sbjct: 287 RYVPMNTIVRDILQK-------RLRTRISKFVFSTQTGKPLPYDHVTQRHFKKSQREAGL 339

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                 H LRH+FA+H + NGG++ ++Q +LGH  + TT IY +++     D++ E 
Sbjct: 340 ENIIRFHDLRHTFASHFMMNGGNIYTLQKLLGHTDIKTTMIYAHLDQ----DFLREA 392


>gi|126661017|ref|ZP_01732103.1| Tn554-related, transposase A [Cyanothece sp. CCY0110]
 gi|126617716|gb|EAZ88499.1| Tn554-related, transposase A [Cyanothece sp. CCY0110]
          Length = 370

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 60/355 (16%), Positives = 126/355 (35%), Gaps = 76/355 (21%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF--YTEEKITIQTIRQ-------- 65
           +  Q +L     +R L+  T+ +Y C    F  +L +     +++ +  +          
Sbjct: 29  EPIQRYLNYCH-KRQLASNTVNTYACRLLDFWQWLEYKSLNWQEVGLNELADFVNWYLLG 87

Query: 66  ----LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR---- 117
               +   ++R  +SKR       R++  +++ ++ F ++        E + + +     
Sbjct: 88  GEVEVITEDVREIMSKR-----SPRTVNLAITAVQGFYEFHTVEGRVNEKHFMKLAHGWG 142

Query: 118 --------------------NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
                                +K+    P  L +++   L D               R+ 
Sbjct: 143 KRGGFLRGIVKSSPSKRKRIKVKEPKIFPGCLTDEEVTQLADAC----------YSYRDR 192

Query: 158 AILYLLYGCGLRISEALSLTPQN--------------IMDDQSTLRIQGKGDKIRIVPLL 203
            I+ LL   G+R  E L L   +                ++ +    +G   +I I+   
Sbjct: 193 LIVMLLRETGVRRGELLGLHLVDVADFDSRGRIRIIRRDNNPNGATAKGTEREIPIIHNR 252

Query: 204 PSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRG----KPLNPGVFQRYIRQLRRYLGLPL 258
            +V++    Y           ++   LF  + G    KP++         QL +   +  
Sbjct: 253 DAVKETFHAYLLEEYPPEAEKLEHGMLFVNLEGEYIGKPMSSARLNSLFYQLEKRTSI-- 310

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMME 312
               H  RH+FAT +L  G   + +Q +LGH  + TT+ IY++V  +     ++E
Sbjct: 311 KAHPHLFRHTFATRMLQAGYLDQYVQQLLGHKSIGTTKDIYSHVLDEMDLGALLE 365


>gi|327440384|dbj|BAK16749.1| integrase [Solibacillus silvestris StLB046]
          Length = 157

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 3/157 (1%)

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           A+   +Y  G RI E + L   +I    +++ +QGKGDK R V         +  Y D  
Sbjct: 4   ALFEFMYSTGCRIGEVVKLDRHDIDFRTNSVIVQGKGDKEREVYFNTRCSIWLKRYLDER 63

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
             D   +  L +      + ++    +  I+++    G+      H LRHS+ATH+++NG
Sbjct: 64  EDD---DPCLFITDRKPKRRMSIDNLRYIIKRVSNRAGIKKCIHPHQLRHSYATHMINNG 120

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
             +  IQS+LGH +  TT+IY  ++ K   D+  + +
Sbjct: 121 APIDVIQSLLGHEKSETTKIYAQLSGKLRQDYYSKYF 157


>gi|302867667|ref|YP_003836304.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
 gi|302570526|gb|ADL46728.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
          Length = 353

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 68/304 (22%), Positives = 113/304 (37%), Gaps = 12/304 (3%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L      R  S  TL +Y  D       +A   +       +  LS   +      
Sbjct: 37  IEEFLTA-RATRKPSPHTLAAYRRDLTTVAELVAAAGDASPLRLPVSTLSPK-VMRAAFA 94

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN-EKQALT 136
           R        S+ R+ S   SF  +L    +   + +  +   +     P+ L  E     
Sbjct: 95  RFAAPRAAASVHRAWSTWNSFFTFLVAEGVVPGNPMPAVGRPRTPLPRPKPLRGEDTPEE 154

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKG 194
           L+  V      +      R+ A+L L    GLR+SE L+L   ++   D +  + + GKG
Sbjct: 155 LLAAVARAEGRQRDPWPERDLAVLALALCAGLRLSELLALRVSSVAGRDGERRVDVAGKG 214

Query: 195 DKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            + R VP+   V + +  Y     L     ++    P     +G+ L  G  Q  +    
Sbjct: 215 GRPRTVPIEDGVDRVLAGYLDSRRLRFGSRSVRPDAPFLVDRQGEALRRGGLQYLVESCY 274

Query: 252 RYLGL----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           R  G+    P     H LRH+FAT L  +G     I  +LGH  L+++Q Y  V +    
Sbjct: 275 RRSGIGDRVPRGARLHALRHTFATRLAEDGASAAEIMRLLGHASLASSQTYIEVTAGQQR 334

Query: 308 DWMM 311
             + 
Sbjct: 335 AAVA 338


>gi|225573339|ref|ZP_03782094.1| hypothetical protein RUMHYD_01531 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039252|gb|EEG49498.1| hypothetical protein RUMHYD_01531 [Blautia hydrogenotrophica DSM
           10507]
          Length = 408

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/305 (15%), Positives = 114/305 (37%), Gaps = 34/305 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +   +E+K+   +I  +  ++ + +  + + + +   ++  S   +K+      +     
Sbjct: 98  MKLLSEDKLGAASIDSVKLSDAKEWALRMQEKGVAYNTICNSKRSLKAIFYMAVQDDCLR 157

Query: 110 ESNI-LNMRNLKKSNSLPRA-LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     +  +   +++P+  L   Q   L+D +     +++ +    +  ++  L   G
Sbjct: 158 KNPFDFQINEVINDDTVPKVPLTPTQENELLDFM----QNDSVYAKYYDEVVI--LLETG 211

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAIL 211
           LRISE   LTP ++  ++  + +                       R VP+  +  +A  
Sbjct: 212 LRISELCGLTPADLNFEKRFVNVDHQLLRSTEDGYYIEAPKTESGFRQVPMSAAAYEAFE 271

Query: 212 EYYDLCPFDLNL---NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTA 262
                      +     +  LF    G P     +    + L +         LP   T 
Sbjct: 272 RVLKKRRDGKGIEVDGYKDFLFLNRDGLPKTAVNYDAMFKCLAKKYNKCHKEPLPDVMTP 331

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPSI 321
           HT+RH+F T + + G + +++Q I+GH  +  T   Y +    +  + M  +  +   + 
Sbjct: 332 HTMRHTFCTRMANAGMNPKALQYIMGHANIVMTLNYYAHATFHSAQEEMERLQAKAKTTA 391

Query: 322 TQKDK 326
             K +
Sbjct: 392 EAKPE 396


>gi|168215898|ref|ZP_02641523.1| phage integrase [Clostridium perfringens NCTC 8239]
 gi|182382275|gb|EDT79754.1| phage integrase [Clostridium perfringens NCTC 8239]
          Length = 400

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/282 (21%), Positives = 112/282 (39%), Gaps = 39/282 (13%)

Query: 63  IRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           +  L    I+A+ +     ++    ++K     +KS L    K    T++    +   K 
Sbjct: 120 LMDLRTHHIQAYYNSLVSEERKSPSTIKTINKCLKSCLNQALKEGYITKNYCTLITLPKG 179

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           S S    +N     TL +      +   + ++ +N  +  L  G GLR+ E L+L   +I
Sbjct: 180 SESPKEIIN---IFTLEE----QQTFMKECMNNKNGMLYILALGTGLRLGEILALKWTDI 232

Query: 182 MDDQSTLRIQG------------------------KGDKIRIVPLLPSVRKAILEYYDLC 217
               + + I                            + IR VPL  ++ + + ++    
Sbjct: 233 NFKNNYIDINKAIKSTYKIDSKGNREFQIIEQQPKTKNSIRTVPLNDNLIELLQQHRKKQ 292

Query: 218 PFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
             D + NI++      +F    G  LN    ++  +++     L      H LRH+FAT 
Sbjct: 293 MIDRDSNIEIYFDNNLVFSTPIGNYLNESNVRKTFKRILNKCNL-KELRFHDLRHTFATR 351

Query: 273 LLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           L  NG   +++Q+ILGH  +STT  IYT+V        + ++
Sbjct: 352 LFENGVPPKTVQTILGHSDISTTLNIYTHVMKDTKDKAIDKL 393


>gi|34763511|ref|ZP_00144452.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27886817|gb|EAA23949.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 328

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/298 (20%), Positives = 127/298 (42%), Gaps = 26/298 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTI----RQLSYTEIRAFISKR-RTQKIGDR 86
           S+ T++ Y    + FL F+ +  E   +I  +    + +   ++ A+I      +++   
Sbjct: 33  SEKTIKDYMFHLKDFLHFV-YDGENDFSISEVIPLMQDIEKEDVEAYIVHLFEDRQLKKT 91

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL--NEKQALTLVDNVLLH 144
           S+   LS +KS  K L+ + +  ++ +  ++  K + ++   L  +      ++    + 
Sbjct: 92  SVNTILSALKSLYKELESKGL--KNPVKYIKLFKVNRNIENILKVSIDDIRKIIGLYKID 149

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR---IQGKGDKIRIVP 201
           +  +      RN  ILY L+  G+R  E L+L  ++ +  +       I+ K  K    P
Sbjct: 150 SEKK-----YRNITILYTLFYTGMRSKELLTLQFKHYLKREDEYFFKLIETKSGKDVYKP 204

Query: 202 LLPSVRKAILEY----YDLCPFDLNLNIQLPLFRG--IRGKPLNPGVFQRYIRQLRRYLG 255
           +  S+ K + EY      +   DL    +  +F    +   PL+       I+ + + +G
Sbjct: 205 IHKSLVKKLEEYKKYLISMYSLDLKDLDEKYIFSTSILDNSPLSYRSLNAIIQDMGKLIG 264

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                + H +RH+ AT L  +G D+  I+  LGH     T++Y N  S      + ++
Sbjct: 265 --KDISPHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARSILEKKVLEKL 320


>gi|304404690|ref|ZP_07386351.1| integrase family protein [Paenibacillus curdlanolyticus YK9]
 gi|304346497|gb|EFM12330.1| integrase family protein [Paenibacillus curdlanolyticus YK9]
          Length = 359

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/323 (20%), Positives = 113/323 (34%), Gaps = 45/323 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQL---SYTEIRAFISKRRTQ 81
           LS  +L  Y  D   F  +L      A    + + ++ + +L   S    R F+  R   
Sbjct: 34  LSPSSLLEYVRDYDTFFSYLLAEGLAAGPAIKDVKLEELEKLHMDSIDSFRMFLMTRTEH 93

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                S+ R LS ++S   YL +     +   L  RN+    S+ R    K     ++  
Sbjct: 94  TNMRVSVTRKLSSLRSLFHYLSQIAEDEQFYPLLKRNVMAKVSIKRTSKPKDTAAKLEGK 153

Query: 142 LLHTSHETKWIDA------------------------RNSAILYLLYGCGLRISEALSLT 177
           LL       ++                          R++ I+ L+   GLR+SE ++L 
Sbjct: 154 LLQEEEIAAFLSYVERDYEQDVAKNKQALYSYQLNKVRDACIISLILHSGLRVSEVVNLN 213

Query: 178 PQNIMDDQSTLRIQGKGDKIRIV----PLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRG 232
             +I   +    +  KG                 +++ +Y  L     +    +  LF  
Sbjct: 214 VDDIDLKKKLSYVFRKGKNDDTFKTPVYFRQEAVESLSQYMQLRDLAYHAPKREKGLFLA 273

Query: 233 IRG-----KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           I         +     Q  + +  +  G P   + H LRHSFAT       D+   Q  L
Sbjct: 274 IANGKKEGSRMTKRAIQEMVIKYAKRFGKPY-LSVHKLRHSFATDYYLRN-DIYKTQEQL 331

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH    TTQIY ++  +   + +
Sbjct: 332 GHASPETTQIYAHLTDRTMAEAI 354


>gi|281491739|ref|YP_003353719.1| site-specific tyrosine recombinase Xers [Lactococcus lactis subsp.
           lactis KF147]
 gi|281375453|gb|ADA64963.1| Site-specific tyrosine recombinase XerS [Lactococcus lactis subsp.
           lactis KF147]
          Length = 351

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 68/353 (19%), Positives = 139/353 (39%), Gaps = 42/353 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWL-QNLEIER--GLSKLTLQSYECDTRQFLIFL------A 51
           M  NN  +    +L+ E  N++ + ++ +R   LS+ ++  Y  D R++L +L       
Sbjct: 1   MSENNGYQYNVNKLMLEFPNYVNEYIQSKRVVPLSEASIYEYCLDFRKYLQWLLDGSITN 60

Query: 52  FYTEEKITIQTIRQLSYTEIRAFISKRRTQ-------KIGDRSLKRSLSGIKSFLKY--- 101
               ++IT+Q +  ++  E+  F+   R +            +L R+++ IKS   Y   
Sbjct: 61  HNQIKEITLQELENVTKHELEDFVLHERLRLESKCGSNAHTSALNRTIAAIKSLYNYLSE 120

Query: 102 ----LKKRKITTESNILNMRNLKKSNSLP--------RALNEKQALTLVDNVLLHTSHET 149
                      T +    +   KKS +L         +     +    ++ V  +  +  
Sbjct: 121 QTEDEHGNTYMTRNVSRLIHIRKKSETLHYRAAQLEGKLFLGDETKDFLEFVEHNYENSV 180

Query: 150 --------KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
                   K    R+ AIL L    GLR +E + +   ++  +   + +  K  K  +VP
Sbjct: 181 SNRARTSFKKNKIRDLAILSLFLSSGLRCAELVGINLDDLNLEAGKVSVMRKEGKKDVVP 240

Query: 202 LLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +     K I +Y+ +    D  +          + + ++     + + +        +  
Sbjct: 241 IAQFSHKYINDYFVIRSSIDTEIQAFFITDYDQKIRKISNASINKLVAKYSEAY--KVRV 298

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           T HTLRH+FAT L +       + + LGH     T++YT++ S    D + ++
Sbjct: 299 TPHTLRHTFATRLYNVSHSQVLVSNQLGHSSTKPTELYTHIVSAEAKDALNKL 351


>gi|329766993|ref|ZP_08258521.1| hypothetical protein HMPREF0428_00218 [Gemella haemolysans M341]
 gi|328837718|gb|EGF87343.1| hypothetical protein HMPREF0428_00218 [Gemella haemolysans M341]
          Length = 348

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 67/339 (19%), Positives = 135/339 (39%), Gaps = 41/339 (12%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQ 65
            E     ++++        LS LTL  Y    + FL +          + +++ + T+  
Sbjct: 16  PEFPDYIEDFID--TYYDNLSPLTLHRYLETYKNFLNWTIRETISDAESIKEVQLSTLEN 73

Query: 66  LSYTEIRAFISKRRTQKI-----GDRSLKRSLSGIKSFLKY-------LKKRKITTESNI 113
           +S  E+ ++      +++        ++    + ++S  K+        + R     + +
Sbjct: 74  ISKKEMESYFKSLSREQVNGKYRSQTTVNNYKAAMRSLYKFLTVTSENEQGRAYFERNVM 133

Query: 114 LNMRNLKKSNSLP---RALNEKQALTLVDNVLLH----------TSHETKWI---DARNS 157
           L +   +   +L    + ++EK  L   D   L           + H   +     AR+ 
Sbjct: 134 LKIPINRVKETLSSRSKKISEKIFLDSQDEEFLQYVEFEYEKTLSKHGKTFFLRDKARDL 193

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           AIL L    G+R++E  +L  ++I    S + +  KG+K+  V +  S    + EY    
Sbjct: 194 AILTLFLKSGIRVNELANLKVKDIDFLNSEINVIRKGNKVDTVIITKSALDRLNEYITSL 253

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSN 276
           PF LN   +  +F       L+    Q+ + +      +P   + H LRHS+ T L L  
Sbjct: 254 PFKLNR--EDYVFISKNKAGLSIRAIQKLVMKYTDAFNVP--MSPHKLRHSYGTKLALKT 309

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            G++  I + +GH    T+ +Y N + K     + ++ D
Sbjct: 310 NGNIPIIMTQMGHSNSDTSMLYINESKKIIKQSIDKLDD 348


>gi|295401863|ref|ZP_06811827.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|294976117|gb|EFG51731.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
          Length = 191

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 9/191 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
             +    ++  L+IE+  S  T+  +  + R F  FL  +         +  ++ T +R 
Sbjct: 3   FRQAIDEFVLYLQIEKNYSLNTVDGHAYNLRCFENFLVQHGYS----VQLHDITKTHVRH 58

Query: 74  FISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           FI  + T + +  R++ R +S +KSF KY  K  +     ++ +   K  + LP  ++  
Sbjct: 59  FIQHQITKENVKPRTIYRRISCLKSFSKYCVKENLIDNDFMIGIDTPKTDSKLPTYMSLS 118

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L          +   +  RN  +  LL   G+R SE + LT + I    +T+RI G
Sbjct: 119 ELRKLFHF----LEQDNSRMAMRNHLLFKLLATTGMRRSEIVELTWEQIDLSNNTIRIYG 174

Query: 193 KGDKIRIVPLL 203
           KG K R++P  
Sbjct: 175 KGKKERLLPFC 185


>gi|206580735|ref|YP_002237616.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
 gi|206569793|gb|ACI11569.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
          Length = 308

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 115/292 (39%), Gaps = 29/292 (9%)

Query: 38  SYECDTRQFLIFLAFYTEEKIT-----IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           +Y     +  I+L   T            ++  ++   ++AF++    +    ++    L
Sbjct: 12  AYRQALGE--IWLDNCTPRAFGRFMGAEASLEDVTPESVKAFLA---GKGALTQTWHIKL 66

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           SG++S  +Y   R +   + +  M   + +   P   ++ + ++L           T + 
Sbjct: 67  SGLRSLYQYAVSRGLADTNPLPVMSPARPAAFEPYIYSQAELISLFKAAETVAWARTLYA 126

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAIL 211
                 IL L+Y  GLR+SE +SL  +++   +  L+++  K  K R+VP  P +R  +L
Sbjct: 127 GDL-HLILLLIYSAGLRVSELISLNREDVGLKECVLKVRQSKFGKTRLVPFSPQLRDKLL 185

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA------HTL 265
                           P F    G  +     Q Y R+LR   G+     A      H L
Sbjct: 186 TVEARYN---TTECSTPFFVSHAGNRICTYTLQNYFRRLRNECGITRHDGARYEPRIHDL 242

Query: 266 RHSFATH----LLSNGGD----LRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           RHSFA H       NG D    L  +   LGH  L  TQ+Y ++  +   + 
Sbjct: 243 RHSFAVHRLTSWYRNGDDVQLLLPQLSVYLGHVHLRATQVYLSMTPELLEEA 294


>gi|57167914|ref|ZP_00367054.1| DNA recombinase Cj0863c [Campylobacter coli RM2228]
 gi|57021036|gb|EAL57700.1| DNA recombinase Cj0863c [Campylobacter coli RM2228]
          Length = 354

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 69/290 (23%), Positives = 127/290 (43%), Gaps = 24/290 (8%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R      + +Y    ++   +L FY      + +++Q+    I   ++   T  + D S 
Sbjct: 66  RNAGLNGVNTYFNPLKKVFEYLNFYK-----LHSLKQIDEELIVEVLAS-ITGALSDASK 119

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLK--------KSNSLPRALNEKQALTLVDN 140
           K     +  F  +L K+    E   +    LK        K   LP  +NE +    ++ 
Sbjct: 120 KNYRIAVIIFFDFLDKQNEEDEKAHIFNIVLKNWGGITGSKGAKLPEFMNEDELKKFLEA 179

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIR 198
           +    + + K    RN  I+ ++   G+R+SEA+++  ++I ++     +RI+ KG+K R
Sbjct: 180 IE---NSDFKNNTIRNKLIIKIIIFTGIRVSEAINIKLKDISEENELYIIRIRAKGNKYR 236

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           +V +   + + +L+   +      L+    LF    GK L      R + Q+    G+  
Sbjct: 237 VVMIKKELIEHLLKDVRVNY----LSEDGLLFVNRNGKALTQAYVSRIVEQILFRAGIRK 292

Query: 259 STT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
               AH LRH+FAT L     DL  +Q  LGH  L+T++IYT+ ++    
Sbjct: 293 QKNGAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLK 342


>gi|126660458|ref|ZP_01731567.1| Tn554, transposase B [Cyanothece sp. CCY0110]
 gi|126618271|gb|EAZ89031.1| Tn554, transposase B [Cyanothece sp. CCY0110]
          Length = 640

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/332 (19%), Positives = 116/332 (34%), Gaps = 35/332 (10%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           N  E+V     K  + ++   E+ R LS  TL     + + F  F+    EE        
Sbjct: 203 NFSEVVPLWAKKYIKKYILF-EVSRNLSFETLIQRLSELKLFGKFI----EESFYCHRFE 257

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN--LKKS 122
            +    I  F+   +T          +LS IK F +             L  R    K  
Sbjct: 258 DIDRNLILDFLLHLKTSDYSFSRKHHTLSAIKRFFETGTLNGWFNVEPSLIRREDWGKTP 317

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ--- 179
            +LPR + E + ++ +   + H              ++ +   CG R+ E +SL      
Sbjct: 318 KTLPRFIPE-EVMSQLMMHIEHLPESIMR-------MVLVNIECGFRVGELVSLPFDCLK 369

Query: 180 -NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP- 237
            N  D  S      K  K  I P+   +   I E        L  + +  LF G +    
Sbjct: 370 TNGKDGWSIQYKNHKMKKEAIKPISSELALVIKEQQYYIREKLESDFK-YLFCGGKLGMS 428

Query: 238 --------LNPGVFQRYIRQLRRYLGLPL------STTAHTLRHSFATHLLSNGGDLRSI 283
                   ++   F +Y+R L     +           +H  RH+  T +++ G     +
Sbjct: 429 PFYPEAKLMSSRSFTKYLRGLAEQYQIKDCNGELWHFQSHQFRHTVGTRMINAGVPQHIV 488

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           Q  LGH   + TQ+Y +++ +     + + ++
Sbjct: 489 QRYLGHESPTMTQVYAHIHDQTLRKEIEKYHE 520


>gi|94990536|ref|YP_598636.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes
           MGAS10270]
 gi|94544044|gb|ABF34092.1| Integrase/recombinase xerD [Streptococcus pyogenes MGAS10270]
          Length = 368

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 67/323 (20%), Positives = 119/323 (36%), Gaps = 45/323 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEK------ITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  + ++F  +L      K      I + T+  L+  ++ AF+   R     
Sbjct: 45  YSFTTLYEYLKEYKRFFDWLMDADLTKVPKIADIDLSTLEHLTKKDLEAFVLYLRERPSL 104

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-------- 126
                 + +   ++ R+LS + S  KYL +     +      RN+ K  S          
Sbjct: 105 NTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAS 164

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDA---------------RNSAILYLLYGCGLRIS 171
           RA N KQ L L D  L    +  K  +                R+ AI+ LL   G+R+S
Sbjct: 165 RAENIKQKLFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLS 224

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLF 230
           EA++L  +++  +   + +  KG K   V +    +  +  Y  +         Q L  F
Sbjct: 225 EAVNLDLKDVNLNMMIIEVIRKGGKRDSVNVAGFAKGYLESYLAVRQRRYKAEKQDLAFF 284

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +      +    T H LRH+ AT L         +   L
Sbjct: 285 LTEYRGVPNRMDASSIEKMVGKYSEDFKI--RVTPHKLRHTLATRLYDATKSQVLVSHQL 342

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH     T +YT++ +    + +
Sbjct: 343 GHSSTQVTDLYTHIVNDEQKNAL 365


>gi|326204540|ref|ZP_08194397.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
 gi|325985333|gb|EGD46172.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
          Length = 279

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/304 (21%), Positives = 126/304 (41%), Gaps = 29/304 (9%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +L   +++L    +  G S  T+  Y  + + +L + +             ++ +  I  
Sbjct: 1   MLDGFKDYL----VLHGKSVNTVNGYCRNVKAYLEWFSQTYG-----LEFSRIHHENILE 51

Query: 74  FISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLPRALN 130
           + S  +   ++  +++   LS +  F ++L    I   + +     +K     + P  + 
Sbjct: 52  YKSYLKNILQLDAKTINNKLSALAKFNEFLIHNGIQDNTAVTKQDFIKVQLNYASPAKIQ 111

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           ++        +L H + +          ++ +L    LRISEALSL   ++      LR+
Sbjct: 112 KEDVKKFRQLILEHENKK-------YYTVISVLEMTALRISEALSLKISDVNLTARELRV 164

Query: 191 Q-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + GKG+K RIV +   +   + +Y  L   D        LF G R  PLN  V  +   +
Sbjct: 165 RNGKGNKQRIVYINDQLADILKDYIKLYQPD------SWLFPG-RKGPLNRTVVNKVFAK 217

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            +       S T H LRH + ++ L N   +  I SI GH  + T  +YTN + +   + 
Sbjct: 218 YKNKT--SDSLTPHQLRHHWCSNALENDFTVAEIASIAGHSNIHTILLYTNPSKQKLKEK 275

Query: 310 MMEI 313
           M ++
Sbjct: 276 MNKL 279


>gi|116627800|ref|YP_820419.1| site-specific tyrosine recombinase XerS [Streptococcus thermophilus
           LMD-9]
 gi|122267603|sp|Q03KP9|XERS_STRTD RecName: Full=Tyrosine recombinase xerS
 gi|116101077|gb|ABJ66223.1| tyrosine recombinase XerC subunit [Streptococcus thermophilus
           LMD-9]
          Length = 356

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 63/324 (19%), Positives = 117/324 (36%), Gaps = 47/324 (14%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEK------ITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  + ++F  +L             I I+T+  L+  ++ +F+   R     
Sbjct: 33  YSFTTLYEYLKEYKRFFNWLIDSGISDADDIASIHIKTLENLTKKDMESFVLYLRERPSL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKR--------------------KITTESNIL 114
                 Q +   ++ R+LS + S  KYL +                     K   E+   
Sbjct: 93  NTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKISTKKKKETLAA 152

Query: 115 NMRNLKKSNSL----PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
              N+K+   L     + L+  +    V       S   K  + R+ AI+ LL   G+R+
Sbjct: 153 RAENIKQKLFLGDETMKFLDYVENEYEVKLSNRAKSSFYKNKE-RDLAIIALLLSSGVRL 211

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PL 229
           SEA++L  ++I      + +  KG +   V +    R  +  Y  +         Q   L
Sbjct: 212 SEAVNLDLKDINLKMMVIDVTRKGGQRDSVNMASFARPYLENYLSIRNKRYKAEKQDVAL 271

Query: 230 FRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           F          ++    ++ + +  +   +    T H LRH+ AT L         +   
Sbjct: 272 FLTEYRGVPNRIDASSIEKMVGKYSQDFKI--RVTPHKLRHTLATRLYDATKSQVLVSHQ 329

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWM 310
           LGH     T +YT++ +    + +
Sbjct: 330 LGHASTQVTDLYTHIVNDEQKNAL 353


>gi|303236846|ref|ZP_07323425.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483014|gb|EFL46030.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 439

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 60/292 (20%), Positives = 109/292 (37%), Gaps = 27/292 (9%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           R    F+     + I I TI +  + E R F+ KR        ++ R L  +   +    
Sbjct: 136 RNLREFVENKGVQDIPIGTITEDLFEEYRFFLKKR---GYAAPTINRHLCWLSRLMFRAV 192

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
            ++I   +   N +  K+   + R L + +   LV   +     E          +    
Sbjct: 193 SQRIIRCNPFENAKYEKEDRKI-RFLQKSEVTKLVAMKMNDRETELA------RLMFVFS 245

Query: 164 YGCGLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
              GL IS+  +L  ++     D Q  +R + +  K+  +  L  + +AI+ +       
Sbjct: 246 CFTGLAISDMENLEYRHFQTAADGQQYIRKERQKTKVEFIVPLHPIAEAIISH----CRK 301

Query: 221 LNLNIQLPLFRGIRGKPL------NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                +  L    +G  L      +  V    +  + +  G+    + H  RH+F T  L
Sbjct: 302 EQERSEEHLMVKEKGDRLVFHRDCSRSVMDTKLSIVGKACGIRERLSYHMARHTFGTMSL 361

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
           S G  + SI  ++GH  +S+TQIY  V      + M  +  +       KDK
Sbjct: 362 SAGIPIESIAKMMGHASISSTQIYAQVTDSKISEDMDRLIARY----KAKDK 409


>gi|325846637|ref|ZP_08169552.1| phage integrase, N-terminal SAM domain protein [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481395|gb|EGC84436.1| phage integrase, N-terminal SAM domain protein [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 258

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 98/239 (41%), Gaps = 27/239 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL--------------AFYTEEKITIQT- 62
             ++L  L+  R LS+ T+  Y  D   F+ +                   +E I I   
Sbjct: 9   LDDYLSYLKSIRALSEKTISEYRYDLINFIYYQILRKVYFNDKENLNKDIEDENININKI 68

Query: 63  -----IRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILN 115
                I  ++  ++ ++IS    +      +  R +S ++SF KYL +  +I   +    
Sbjct: 69  FNKSFISDINIQDMYSYISYLDNELNDNASTRSRKISALRSFYKYLHQEIEIIDNNITEK 128

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +RN K     P  L   +   L+D +      + +++  R+ AI++     G+R+SE +S
Sbjct: 129 LRNPKIQKRQPVYLTLSETEHLLDTI---NEEKNEFLRNRDMAIVFTFLTTGMRLSELVS 185

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +  ++I DD  T+   GKG+K R + L  +    I  Y  +    L       LF   R
Sbjct: 186 VDLKDIKDDHFTII--GKGNKERTIYLTKNCIDLIDNYIMIRKNYLKDIKIDALFISTR 242


>gi|238791280|ref|ZP_04634919.1| Integrase [Yersinia intermedia ATCC 29909]
 gi|238729413|gb|EEQ20928.1| Integrase [Yersinia intermedia ATCC 29909]
          Length = 291

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 59/267 (22%), Positives = 105/267 (39%), Gaps = 11/267 (4%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQT--IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97
                  L   A    ++ T QT     L + ++         +     ++  +LS +++
Sbjct: 14  RGGITSLLNHCARILSKRSTAQTYPWELLDFGKVAKIRMTMLDEGYAVSTVNMALSALRA 73

Query: 98  FLKYLKKRKITTESNILNMRNLKKSN----SLPRALNEKQALTLVDNVLLHTSHETKWID 153
             K            +L +  + +         RAL  ++   L+    +  SH+     
Sbjct: 74  IAKTAFNFDQMNVDVLLRINAVVRVKGDTTRKGRALTRQEIRQLLK---VAKSHQEPARR 130

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            R++AIL  L G GLR+ E + L   +  +    +R QGKG K R + + P+V KA+  +
Sbjct: 131 CRDAAILLTLCGAGLRVGELVKLQQDDYAEGVLVVR-QGKGRKYREIHVAPAVDKALTAW 189

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
             +      L  ++          L        + QLR    +    T H LR +F T L
Sbjct: 190 LAMSREGDALFTKIYRSGLPASTALTTAGVTAILEQLRITASVA-EFTPHDLRRTFITQL 248

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTN 300
           L  G D+ +++ + GH  +STT  Y +
Sbjct: 249 LEQGADINTVRQLAGHSDISTTARYDH 275


>gi|126661524|ref|ZP_01732572.1| Phage integrase [Cyanothece sp. CCY0110]
 gi|126617190|gb|EAZ88011.1| Phage integrase [Cyanothece sp. CCY0110]
          Length = 320

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 57/275 (20%), Positives = 112/275 (40%), Gaps = 14/275 (5%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GLS+ + ++           L     +  T+    +L Y    A       QK+   +  
Sbjct: 34  GLSEGSRRTIRYSLNTIASLLTNGDCDADTL-DWSKLRYHHTAAVRVALL-QKLAPVTAN 91

Query: 90  RSLSGIKSFLKYLKKRKITTESN---ILNMRNLKKSNSLP-RALNEKQALTLVDNVLLHT 145
           + LS ++  L    +  +    +    ++  N++ S  L  R+L+  +   L+      T
Sbjct: 92  KMLSALRRVLLEAYRLGLMAADDYQKAVDFPNIQGSPELRGRSLDSTEIRALL-----GT 146

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLP 204
             E   +D R++AI+ +L G G+R SE + L  ++       + ++ GK  K R V L  
Sbjct: 147 CGEDSVMDVRDAAIMVMLRGTGIRRSELVKLELRDFESSTGEVLVRKGKRGKSRRVYLPE 206

Query: 205 SVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
                I  +  +   +   L  ++     ++   ++     R I++  +  G+  S + H
Sbjct: 207 EAISYIQRWLGVRGEESGCLFCRIHRGGHLKLGQMHSDTVWRIIQKRAKMAGIE-SFSPH 265

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             R +F + LL  G D+ ++Q + GH    TT  Y
Sbjct: 266 DFRRTFCSDLLDAGVDIVTVQKLAGHSSPVTTAKY 300


>gi|291166427|gb|EFE28473.1| site-specific recombinase, phage integrase family [Filifactor
           alocis ATCC 35896]
          Length = 372

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/311 (21%), Positives = 135/311 (43%), Gaps = 32/311 (10%)

Query: 21  WLQNLEIERG-LSKLTLQSYECDTRQFLIFL--------AFYTEEKITIQTIRQLSYTEI 71
           +       +G +S  +  +Y  D   F  +L         + + ++I    ++ ++  EI
Sbjct: 37  FRDYFIFLKGSVSISSRYAYLIDIYSFFEYLIDSKFFETEYSSVKQIKQSDLKNITAREI 96

Query: 72  RAFI-SKRRTQKIG-----------DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
             +I    R  ++            ++SL R  S + S  K+L + +    + I     +
Sbjct: 97  NYYIGEYCRKYEVKKEDTVVIFENQNKSLSRKKSSLTSLFKFLFRNEQMKHNLIDGFNPI 156

Query: 120 KKSNSLP---RALNEKQALTLV---DNVLLHTSHETKWID---ARNSAILYLLYGCGLRI 170
           K     P   + L+  +   L+   +  +  T+HE  + +    R+ AI+ +    GLR+
Sbjct: 157 KMPKLNPDAIKRLSIDETNELIHVINTGIGLTNHEKIYWEKTKYRDKAIIMIFITLGLRL 216

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPL 229
           SE   L   +I   +  + +  K  K  ++P   ++  +IL+Y +L    + +N +  PL
Sbjct: 217 SELEQLNITSINFKRKEILVFRKRGKEVLMPFNDTIEHSILQYINLERNHIIINDENDPL 276

Query: 230 FRGIRGKPLNPGVFQRYIRQL-RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           F  ++GK +     ++ I++     LG     + H LR + A+ L+  G  +  +Q++L 
Sbjct: 277 FLSLQGKRMTGRQIRQMIKKYTSIVLGDNEGYSPHKLRSTLASSLIERGFSIYDVQNLLD 336

Query: 289 HFRLSTTQIYT 299
           H  ++TTQIY 
Sbjct: 337 HDNVTTTQIYA 347


>gi|237716536|ref|ZP_04547017.1| integrase [Bacteroides sp. D1]
 gi|262405315|ref|ZP_06081865.1| integrase [Bacteroides sp. 2_1_22]
 gi|294644634|ref|ZP_06722387.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294810165|ref|ZP_06768833.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229442519|gb|EEO48310.1| integrase [Bacteroides sp. D1]
 gi|262356190|gb|EEZ05280.1| integrase [Bacteroides sp. 2_1_22]
 gi|292640071|gb|EFF58336.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294442629|gb|EFG11428.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 409

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 58/270 (21%), Positives = 114/270 (42%), Gaps = 23/270 (8%)

Query: 50  LAFYTEEKITIQTIR--QLSYTEIRAF-ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK 106
           L  +   +  ++ +   QL+   I  + +     +     +++  L+ +K   +   K  
Sbjct: 144 LGEFIGHQYKVKDLAFGQLTEQFIHDYQVFAMENKGYAIDTVRHHLAILKKICRLAYKEG 203

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
              + +  +    K+S+  PRAL+ +    + D  +    H    I AR+  +       
Sbjct: 204 YADKIHFQHFTLPKQSDKTPRALSRESFEKIRDVEI--EPHRKSHILARD--MFLFGCYT 259

Query: 167 GLRISEALSLTPQNIMDDQS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
           G+  ++ +S+T +N+  D +    L+ + K ++ R    L     A++E Y     D   
Sbjct: 260 GVSYADVISITDENLYTDDNGALWLKYRRKKNEHRASVKLLPEAIALIEKYHSEDRDT-- 317

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRS 282
                LF  +R   L     +R+++ L    G+      H  RHSFA+ + L  G  + +
Sbjct: 318 -----LFPLLRWPNL-----RRHMKALAALAGIKDDLCYHQARHSFASLITLEAGVPIET 367

Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           I  +LGH  +STTQ+Y  V+ K   + M +
Sbjct: 368 ISRMLGHSDISTTQVYARVSPKKLFEDMDK 397


>gi|13475333|ref|NP_106897.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14026085|dbj|BAB52683.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 284

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 91/247 (36%), Gaps = 15/247 (6%)

Query: 10  VSFELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
            S +L    + W    L   RG+S  T+ SY    R    F         +  T+R L  
Sbjct: 3   ASNDLAVLIERWFTDRLMRHRGVSSNTIASYRDTFRLLFAFAQTRLGRSPSQLTLRDLDA 62

Query: 69  TEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI---LNMRNLKKSNS 124
             I AF+    T +    R+    L+ I+SF +Y    +    + I   L + + +    
Sbjct: 63  PFIGAFLEDLETLRSASVRTRNLRLTAIRSFFRYASFEEPAHSAQIQRVLAIPSKRCDKR 122

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
             + L   +   +     L     + W+  R+  +L L    GLR+SE + L   ++M  
Sbjct: 123 QLQFLTRPEIEAI-----LACPDRSTWLGRRDHTLLLLAAQTGLRVSEIIDLDRDSVMLG 177

Query: 185 QS-TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
               +R  GKG   R  PL    ++A+  + +    +        LF    G  L+    
Sbjct: 178 HGAHVRCVGKGRNERSTPLTKVAQQALRGWLN----EPRKRGATALFPNTHGGKLSADGV 233

Query: 244 QRYIRQL 250
           Q  + + 
Sbjct: 234 QALLNKY 240


>gi|315038462|ref|YP_004032030.1| site-specific tyrosine recombinase XerS [Lactobacillus amylovorus
           GRL 1112]
 gi|312276595|gb|ADQ59235.1| site-specific tyrosine recombinase XerS [Lactobacillus amylovorus
           GRL 1112]
          Length = 357

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 67/355 (18%), Positives = 135/355 (38%), Gaps = 42/355 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT------ 54
           ME     E +  EL K   ++++   +    S  T   Y  + R+FL +L          
Sbjct: 1   METAKYLERIQIELDK-MPDYVKQYNLGTNHSLTTTYQYLTEIRRFLSWLRKEGISNAPD 59

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKI------GDRSLKRSLSGIKSFLKYLKKRK-- 106
            + +T  T+  L   ++  +I      K          ++ RS++ ++S  K+L      
Sbjct: 60  NKHVTTDTLALLRRNDVMLYIDYLGHTKNKQGHLNSPTTINRSINALRSLFKFLTITADN 119

Query: 107 -----ITTESNILNMRNLKKSNSL---PRALN--------EKQALTLVDNVLLHTSHETK 150
                    + +L + +L  + +L      L         + + L  +D+   +  ++  
Sbjct: 120 NNGMPYFDRNVMLKINSLNDTKTLNYRAHVLASHMYTGNLKFEFLKFIDHDYENKCNKQA 179

Query: 151 WID-----ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
                    R+ AI+ L+ G G+R+SE   +  Q++    + L +  KG +   VP+   
Sbjct: 180 KPGFKMNKERDMAIIALILGTGIRVSECAGVDLQDLNLKDAVLDVTRKGGQKDSVPIAEW 239

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLSTT 261
               I +Y ++     + + +   F   R       +     ++ + +     G P   T
Sbjct: 240 TLDYIQKYKNIRMKRYSADQKETAFFLTRWHNQTRRITTNAIEKMVNKYSAAFGHP--LT 297

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            H LRH+ A+ L     D   +   LG    + T +YT+V+ K     + +I D+
Sbjct: 298 PHKLRHTLASELYEVTKDQVLVAQQLGQKGTTATDLYTHVDQKVQRAALNKISDE 352


>gi|218296683|ref|ZP_03497401.1| integrase family protein [Thermus aquaticus Y51MC23]
 gi|218242996|gb|EED09529.1| integrase family protein [Thermus aquaticus Y51MC23]
          Length = 416

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 63/328 (19%), Positives = 126/328 (38%), Gaps = 36/328 (10%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQ 65
           PE ++  +    Q+WL+     R +   TL  Y  +    L  L     ++ +    ++ 
Sbjct: 68  PEAIT--VRDFAQSWLE--RKAREVRPRTLFLYREELAYALPSLEDPQAKDPLGRARLQA 123

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR---NLKKS 122
           ++  +IRA I     + +  R++K+    + +  +     ++   + +  ++    L++ 
Sbjct: 124 VNPRDIRAVIDGLLNRGLSLRTVKKVREKLNAIFEEALALELVARNPVAPVKVRGGLEQE 183

Query: 123 NSLP-RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              P R L   +   L+  +  H    T       + +L L   CGLR  EAL L  ++I
Sbjct: 184 REKPGRTLETWEIEALLAALDAHPDPRT-------ALVLRLCLSCGLRKGEALGLQWEDI 236

Query: 182 MDDQSTLRIQGKGDKI---------------RIVPLLPSVRKAILEYYDLCPFDLN--LN 224
             ++  L ++                     R VP+       +  Y +     L     
Sbjct: 237 DLEKGLLYVRRTWSFDGARTAISDPKTASGRRAVPIPSKTLARLESYREWWRERLGSYPP 296

Query: 225 IQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
               +F G+   +PL      R + ++ + LGLP     H LRH++ + LL+ G  +  +
Sbjct: 297 PSFWVFPGVNGQEPLGYNTPNRALTRILKRLGLP-PARVHDLRHTYGSMLLARGAPVELV 355

Query: 284 QSILGHFRLSTT-QIYTNVNSKNGGDWM 310
              +GH   S T   Y ++ S+     +
Sbjct: 356 SERMGHTSPSITFNNYRHMFSEERQAHI 383


>gi|228911927|ref|ZP_04075666.1| Phage integrase [Bacillus thuringiensis IBL 200]
 gi|228847722|gb|EEM92637.1| Phage integrase [Bacillus thuringiensis IBL 200]
          Length = 319

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 63/286 (22%), Positives = 117/286 (40%), Gaps = 29/286 (10%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +  S+ T Q Y  D   FL ++        TI TI++LS+ ++  +  +  ++K    +L
Sbjct: 31  KKRSERTKQQYLHDLSHFLHYIKE------TIGTIQELSHNDMEIYFYEL-SKKYASTTL 83

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++  + ++ FLKY+      +++    ++ +  KK   + R L  ++   ++D       
Sbjct: 84  RKKKTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLYPEEVTQILD------- 136

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPL 202
            E K  +       +LL   GLRI E  +    +++   S     LR+ GKG+K R V +
Sbjct: 137 -ELKKSNYFVYTAFFLLTTTGLRIEEIATAKWADLVFHSSLSAYLLRVVGKGNKSREVRI 195

Query: 203 LPSVRKAILEYYDLCPF--DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-- 258
                 A+     L     +L+ +          G           + +    + L    
Sbjct: 196 FEDTLDALCHVRSLRKQTTELDASSTSAFLPKADGSNYRADYLSSLVAKKIEEINLDFLR 255

Query: 259 ----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                 T HT RH  A +L+  G +L+ I+  LGH  + TT+ Y  
Sbjct: 256 YRQDRITPHTCRHFMANYLMEKGVELKKIRDYLGHESIMTTERYLR 301


>gi|227904064|ref|ZP_04021869.1| site-specific tyrosine recombinase XerS [Lactobacillus acidophilus
           ATCC 4796]
 gi|227868083|gb|EEJ75504.1| site-specific tyrosine recombinase XerS [Lactobacillus acidophilus
           ATCC 4796]
          Length = 358

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 68/357 (19%), Positives = 133/357 (37%), Gaps = 42/357 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF------YT 54
           ME     E++  EL K   ++++   +    S  T   Y  + R+F  +L          
Sbjct: 1   METAKYLELIDIEL-KNMPDYVKQYNLGTHHSLATTYQYLTEIRRFFNWLRAEGISTAAD 59

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKI------GDRSLKRSLSGIKSFLKYLKKRK-- 106
              I+  T+  L   +I  +I      K          ++ RS++ ++S  K+L      
Sbjct: 60  NRNISTTTLENLRRNDIMLYIDHLGHTKNKQGRLNSPTTINRSINALRSLFKFLTITADN 119

Query: 107 -----ITTESNILNMRNLKKSNSLPRALNEKQ-----------ALTLVDN-----VLLHT 145
                    + +L + +L  + +L    +  +            L  +D+        H 
Sbjct: 120 NNGMPYFDRNVMLKINSLNDTQTLNYRAHVLESHMYTGDLKFKFLEFIDHDYENKCNKHA 179

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
               K    R+ AI+ L+ G G+R+SE   +  Q++   ++ L +  KG +   VP+   
Sbjct: 180 KPGFKRNKERDMAIIALILGTGIRVSECAGVDLQDLNLKEAVLDVTRKGGQKDSVPIAEW 239

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLSTT 261
               I +Y D+       + +   F   R       +     ++ + +     G P   T
Sbjct: 240 TLSYIKQYKDIRTDRYMADQKQTAFFLTRWHNQTRRITANAIEKMVNKYSASFGHP--LT 297

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
            H LRH+ A+ L     D   +   LG    + T +YT+V+ +   D + +I +  +
Sbjct: 298 PHKLRHTLASELYEVTKDQVLVAQQLGQKGTTATDLYTHVDQRKQRDALNQISNSHN 354


>gi|299536693|ref|ZP_07050004.1| transposition regulatory protein TnpA [Lysinibacillus fusiformis
           ZC1]
 gi|298727873|gb|EFI68437.1| transposition regulatory protein TnpA [Lysinibacillus fusiformis
           ZC1]
          Length = 373

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 59/349 (16%), Positives = 134/349 (38%), Gaps = 80/349 (22%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +++ L+   G S  T ++Y    + F  +L          +  + +   ++  F+   R
Sbjct: 30  KYIKYLDKT-GKSPNTQKTYCYSLKHFYTYLEEKG------KDYKFIKLEDLVDFVGWLR 82

Query: 80  T--------------QKIGDRSLKRSLSGIKSFLKYLKKRKITTES-------------- 111
           +               K  ++++  +++ I +F  YL + +                   
Sbjct: 83  SPYQSSNVTPLQQERAKRTEKTINLTITVIANFYNYLYRNEEVQNDMMEKLMKQVFTGGH 142

Query: 112 ---------------NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
                          +I N+  LK+       L ++Q   +++             + R+
Sbjct: 143 SHYKSFLHHVNKDKPSIRNILKLKEPRRKVDTLTKEQVQQILEAT----------TNIRD 192

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGD---------KIRIVPLLP 204
             ++ LL+  GLRI EAL+L  ++ + D      +R+  +G+           R + +  
Sbjct: 193 RFLIQLLFETGLRIGEALALFMEDFIFDHGKGHRIRLVDRGELENGAMLKTGEREIYVSQ 252

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLST 260
           S+     +Y      +L L+    +F  +RGK    P+     +   ++L++  G+  + 
Sbjct: 253 SLMDLYDDYLYEVLDELELDTNF-VFVKLRGKDVGKPMEYWNVESLFKRLKKKTGI--NL 309

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGD 308
             H  RH+ AT       D++ +Q  LGH ++ TT  +Y + ++++  +
Sbjct: 310 HPHLFRHTHATIYYQKTKDIKQVQERLGHSQIQTTMNLYLHPSNEDIRE 358


>gi|229892120|sp|Q1JLL7|XERS_STRPC RecName: Full=Tyrosine recombinase xerS
          Length = 356

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/323 (20%), Positives = 117/323 (36%), Gaps = 45/323 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  + ++F  +L             I + T+  L+  ++ AF+   R     
Sbjct: 33  YSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLEAFVLYLRERPSL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-------- 126
                 + +   ++ R+LS + S  KYL +     +      RN+ K  S          
Sbjct: 93  NTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAS 152

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDA---------------RNSAILYLLYGCGLRIS 171
           RA N KQ L L D  L    +  K  +                R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLF 230
           EA++L  +++  +   + +  KG K   V +    +  +  Y  +         Q L  F
Sbjct: 213 EAVNLDLKDVNLNMMIIEVIRKGGKRDSVNVAGFAKGYLESYLAVRQRRYKAEKQDLAFF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +      +    T H LRH+ AT L         +   L
Sbjct: 273 LTEYRGVPNRMDASSIEKMVGKYSEDFKI--RVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH     T +YT++ +      +
Sbjct: 331 GHSSTQVTDLYTHIVNDEQKTAL 353


>gi|148360858|ref|YP_001252065.1| site specific recombinase [Legionella pneumophila str. Corby]
 gi|296106078|ref|YP_003617778.1| Site-specific recombinase XerD [Legionella pneumophila 2300/99
           Alcoy]
 gi|148282631|gb|ABQ56719.1| site specific recombinase [Legionella pneumophila str. Corby]
 gi|295647979|gb|ADG23826.1| Site-specific recombinase XerD [Legionella pneumophila 2300/99
           Alcoy]
          Length = 407

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/280 (17%), Positives = 105/280 (37%), Gaps = 35/280 (12%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           + + +++   +  +  KR  +     +L R++S +KS +    +     E+ +  ++  K
Sbjct: 130 KPLGEITPALVEQWRVKRLNEGTSQATLNRNISMLKSLMTKAVEWGFLKENALGKLKPYK 189

Query: 121 KSN-SLPRALNEKQALTLVDNVLLHTSH---------------------ETKWIDARNSA 158
                  R L+  +   L + ++   +                      E    +A +  
Sbjct: 190 IDRSPKIRYLSFAEEARLREALIERDNQLRLMRKNGNLWREKRGYDLLPELSEDNACDYL 249

Query: 159 ILYLLYG--CGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEY 213
           +  +L     GLR  E   LT   +   + +L + G   K    R +PL     K +   
Sbjct: 250 MPMVLLSINTGLRRGELFHLTWDMVNLSEGSLILSGEITKNKHSRYIPLNDEAYKILDNL 309

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
           +        L     +F     +P N    +R    L +   +      H LRH FA+ L
Sbjct: 310 HKKAERKEGL-----VFPSKNNQPFNH--VKRSWGSLLKKANITQ-FRWHDLRHHFASKL 361

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +  G DL +++ +LGH  ++ T  Y ++  ++  + + +I
Sbjct: 362 VMAGVDLNTVRELLGHSDIAMTLRYAHLAPEHKVNAVRKI 401


>gi|90962769|ref|YP_536684.1| site-specific tyrosine recombinase XerS [Lactobacillus salivarius
           UCC118]
 gi|301300342|ref|ZP_07206546.1| site-specific tyrosine recombinase XerS [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|90821963|gb|ABE00601.1| Integrase [Lactobacillus salivarius UCC118]
 gi|300852026|gb|EFK79706.1| site-specific tyrosine recombinase XerS [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 365

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 63/356 (17%), Positives = 141/356 (39%), Gaps = 57/356 (16%)

Query: 13  ELLKERQNWLQNLEIERG---LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTI 63
           ELL E   ++ +  I +     S  T+  Y  +  QFLI+L             I  +++
Sbjct: 12  ELLHELPYYMNDFVIVKTADEYSPNTILEYLKNFHQFLIWLIENHYVNENKTSDIAPESL 71

Query: 64  RQLS---YTEIRAFISKRRTQK----------------IGDRSLKRSLSGIKSFLKY--- 101
            +L+    TE ++++ +R+ Q                 +   +++R+++ +K   K+   
Sbjct: 72  DKLTVRTATEYKSYLLRRKKQNKKALDKNGHKEESTETLSKVTIQRNITALKVIFKFLSR 131

Query: 102 ----LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR-- 155
                +++   T   + ++ N+    +L    +  +    +D+         K +  +  
Sbjct: 132 SANNSQEKPFLTHDVMQSIDNVADKQTLQARADALEEKLFLDDETDEYLQYIKEVYPQSL 191

Query: 156 --------------NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
                         + AI  L+ G GLR+SE +++  +++  + + + +  KG+K   V 
Sbjct: 192 STQAKKFYNRDVERDLAINALMLGSGLRLSEVVNINIEDLDFENNRVAVLRKGNKKDSVR 251

Query: 202 LLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRG---KPLNPGVFQRYIRQLRRYLGLP 257
           +     + +  Y D+       +  +   F  I     K +     ++ + +  +  G  
Sbjct: 252 IAAFAMEYLANYRDIRASRYRADKYEKAFFLAISRGGSKRITGSAIEKMVSKYSK--GFK 309

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +  T H LRH+ AT L     +L      LGH   +TT +YT++++    D +  +
Sbjct: 310 VRVTPHKLRHTLATRLYKQTNNLVLTAQQLGHSSTATTTLYTHIDNDETTDALNSL 365


>gi|207724626|ref|YP_002255023.1| integrase/recombinase protein [Ralstonia solanacearum MolK2]
 gi|206589849|emb|CAQ36810.1| integrase/recombinase protein [Ralstonia solanacearum MolK2]
          Length = 553

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 69/330 (20%), Positives = 121/330 (36%), Gaps = 42/330 (12%)

Query: 16  KERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           KE +  +    IERG  LS LT +    D   +  FL   +  +  +   R  +  + R 
Sbjct: 232 KEAERLILWAIIERGRPLSSLTTE----DAIAYRGFLRHPSPHERWVGPARPRASADWRP 287

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F     T  +  RS+  SLS + +  ++L +++    +    ++      +   AL+   
Sbjct: 288 F-----TDGLSARSIAYSLSVLGAMFRWLVQQRYVLANPFAGIKVRGGGRT--AALDASH 340

Query: 134 ALTLVDNVLLHT-SHETKWIDARN-------SAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           A T  +  L+ T +   +W              +L   Y  GLR SE +      +  D+
Sbjct: 341 AFTEGEWALVRTIADGLEWSYGWEAPAAQRLRFVLDFAYATGLRASELIGARLSGVETDR 400

Query: 186 ---STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-- 240
                L + GKG +   V L P  R A+  Y       +      P    I    L+P  
Sbjct: 401 QGDHWLSLIGKGGRAGKVALPPLARTALDRYLVERGLPVTRARWNPQTPLIGALGLDPDG 460

Query: 241 --------GVFQRYIRQLRR--------YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
                    V +R+                      + H +RH+ A+H L+ G +L +++
Sbjct: 461 GITGSRLWSVVRRFFWAAADIIEGDHTVLAEKLRKASPHWMRHTHASHALARGAELTTVR 520

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
             L H  +STT IY + +       +   +
Sbjct: 521 DNLRHASISTTSIYLHGDDVKRARQIEAAF 550


>gi|256811516|ref|YP_003128885.1| integrase family protein [Methanocaldococcus fervens AG86]
 gi|256794716|gb|ACV25385.1| integrase family protein [Methanocaldococcus fervens AG86]
          Length = 330

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/299 (20%), Positives = 128/299 (42%), Gaps = 20/299 (6%)

Query: 13  ELLKERQNWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           E   + + +L+  E ER   G+ + T++S   D  +  +FL +        +   +L   
Sbjct: 23  EETDKIKEYLKRFEEERRFDGIKESTIKS---DLDRLRVFLDYCI--NYLGKNPEELKTG 77

Query: 70  EIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           +   F +   T +K+   S ++    +K F + L+   +  E    +    + +    + 
Sbjct: 78  DFVKFFNYLDTVRKVSKSSQRKYFLLLKVFYRVLRMYDVIQEFVEESKERKRFARIEIQH 137

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
            +   A  +++ +L            R++ I+ LL+  G R+SE L+L   ++  D    
Sbjct: 138 YDAVDAE-MLNMILRKIIESGSRTRIRDALIIRLLWDTGCRVSEILNLKYGDVDLDNGIF 196

Query: 189 RIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN----PGVF 243
           +I+  K  + R V       + + +Y     F++       LF+  +GK +       VF
Sbjct: 197 KIRNTKTHEERTVVCSSDTLELLRDY---VQFNVRQGSDDYLFQNSQGKKVRKEWISEVF 253

Query: 244 QRYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +R + +L+    +P +     H++RH  A  LL+ G  +  ++  LGH  ++TT IY +
Sbjct: 254 RRAVNELKEEGKIPKNKRIVIHSIRHGRAVDLLNKGVPIDIVKEYLGHRSMNTTLIYAH 312


>gi|50914248|ref|YP_060220.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes
           MGAS10394]
 gi|50903322|gb|AAT87037.1| Integrase/recombinase xerD [Streptococcus pyogenes MGAS10394]
          Length = 368

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/323 (20%), Positives = 118/323 (36%), Gaps = 45/323 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  + ++F  +L             I + T+  L+  ++ AF+   R     
Sbjct: 45  YSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLEAFVLYLRERPSL 104

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-------- 126
                 + +   ++ R+LS + S  KYL +     +      RN+ K  S          
Sbjct: 105 NTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAS 164

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDA---------------RNSAILYLLYGCGLRIS 171
           RA N KQ L L D  L    +  K  +                R+ AI+ LL   G+R+S
Sbjct: 165 RAENIKQKLFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIISLLLASGVRLS 224

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLF 230
           EA++L  +++  +   + +  KG K   V +    +  +  Y  +         Q L  F
Sbjct: 225 EAVNLDLKDVNLNMMIIEVIRKGGKRDSVNVAGFAKGYLESYLAVRQRRYKAEKQDLAFF 284

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +      +    T H LRH+ AT L         +   L
Sbjct: 285 LTEYRGVPNRMDASSIEKMVGKYSEDFKI--RVTPHKLRHTLATRLYDATKSQVLVSHQL 342

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH     T +YT++ +    + +
Sbjct: 343 GHSSTQVTDLYTHIVNDEQKNAL 365


>gi|77734445|emb|CAJ26229.1| integerase-recombinase [Thermotoga sp. KOL6]
          Length = 190

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 93/220 (42%), Gaps = 32/220 (14%)

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALN 130
           R ++           + +  L  +K++L +   R +   E+   N     K + LP+A+ 
Sbjct: 1   REYLHSISMN--SPATQRNKLVVVKNYLNWKVDRGMMNVENRFWNEAEPPKHHVLPKAIE 58

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLR 189
            ++   +++                  AI  +L   G+RISE ++L  ++I   D + +R
Sbjct: 59  IEEVRKIIEICD----------HPMYKAIFKILANTGMRISELINLEKEDISLNDSARIR 108

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           I+GKG+K RI+ +   + + ++                    G   K  +    QR +R+
Sbjct: 109 IKGKGNKERIINVTKDLIEELIN------------------SGFFEKKPSVRSIQRAVRR 150

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
             R  G+    T H  RHSFA  L+  G  L  IQ++LGH
Sbjct: 151 YARKAGIKKKVTPHVFRHSFAVALIERGVPLNKIQALLGH 190


>gi|125624092|ref|YP_001032575.1| site-specific tyrosine recombinase XerS [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124492900|emb|CAL97861.1| tyrosine recombinase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070865|gb|ADJ60265.1| site-specific tyrosine recombinase XerS [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 351

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 68/353 (19%), Positives = 142/353 (40%), Gaps = 42/353 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWL-QNLEIER--GLSKLTLQSYECDTRQFLIFL------A 51
           M  N+  +    +L+ E  N++ + ++ +R   LS+ ++  Y  D R++L +L       
Sbjct: 1   MSENHGYQYNVNKLMLEFPNYVNEYIQSKRVVPLSEASIYEYCLDFRKYLQWLLDGSITN 60

Query: 52  FYTEEKITIQTIRQLSYTEIRAFISKRRTQ-------KIGDRSLKRSLSGIKSFLKYLKK 104
               ++IT+Q +  ++  E+  F+   R +            +L R+++ IKS   YL +
Sbjct: 61  HNQIKEITLQELENVTKHELEDFVLHERLRLESKCGSNAHTSALNRTIAAIKSLYNYLCE 120

Query: 105 RK-------ITTESNILNMRNLKKSNSLP--------RALNEKQALTLVDNVLLHTSHET 149
           +          T +    +   KKS +L         +     +    ++ V  +  +  
Sbjct: 121 QTEDEHGNTYMTRNVSRLIHIRKKSETLHYRAAQLEGKLFLGDETKAFLEFVEHNYENSI 180

Query: 150 --------KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
                   K    R+ AIL L    GLR +E + +   ++  +   + +  K  K  +VP
Sbjct: 181 SNRARTSFKKNKIRDLAILSLFLSSGLRCAELVGINLDDLNLEAGKVSVMRKEGKKDVVP 240

Query: 202 LLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +     K I +Y+ +    D  +          + + ++     + + +        +  
Sbjct: 241 IAQFSHKYINDYFVIRSSIDTEIQAFFITDYDQKIRKISNASINKLVAKYSEAY--KVRV 298

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           T HTLRH+FAT L +       + + LGH     T++YT++ S    D + ++
Sbjct: 299 TPHTLRHTFATRLYNVSHSQVLVSNQLGHSSTKPTELYTHIVSAEAKDALNKL 351


>gi|71903550|ref|YP_280353.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes
           MGAS6180]
 gi|71802645|gb|AAX71998.1| recombinase [Streptococcus pyogenes MGAS6180]
          Length = 368

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/323 (20%), Positives = 118/323 (36%), Gaps = 45/323 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  + ++F  +L             I + T+  L+  ++ AF+   R     
Sbjct: 45  YSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLEAFVLYLRERPSL 104

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-------- 126
                 + +   ++ R+LS + S  KYL +     +      RN+ K  S          
Sbjct: 105 NTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAS 164

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDA---------------RNSAILYLLYGCGLRIS 171
           RA N KQ L L D  L    +  K  +                R+ AI+ LL   G+R+S
Sbjct: 165 RAENIKQKLFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLS 224

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLF 230
           EA++L  +++  +   + +  KG K   V +    +  +  Y  +         Q L  F
Sbjct: 225 EAVNLDLKDVNLNMMIIEVIRKGGKRDSVNVAGFAKGYLESYLAVRQRRYKAEKQDLAFF 284

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +      +    T H LRH+ AT L         +   L
Sbjct: 285 LTEYRGVPNRMDASSIEKMVGKYSEDFKI--RVTPHKLRHTLATRLYDATKSQVLVSHQL 342

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH     T +YT++ +    + +
Sbjct: 343 GHSSTQVTDLYTHIVNDEQKNAL 365


>gi|323344111|ref|ZP_08084337.1| phage integrase family site-specific recombinase [Prevotella oralis
           ATCC 33269]
 gi|323094840|gb|EFZ37415.1| phage integrase family site-specific recombinase [Prevotella oralis
           ATCC 33269]
          Length = 327

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 108/254 (42%), Gaps = 28/254 (11%)

Query: 74  FISKRRTQKI-GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALN 130
           ++       I  +R+    +  ++ F +++      +    L     K+  +  +P   +
Sbjct: 59  YLKWLENVGICSERTRYAKILILRQFSQFMCHMGYASYIPSL----PKRPKTSYIPHVYS 114

Query: 131 EKQALTL---VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           E++  +L   +DN LL   H T  +      I   LY CG R+ E L++   ++   +  
Sbjct: 115 EQEVKSLFNAIDNTLLQCRHNTTCLIGL-PVIFRFLYYCGARVGEVLAIRNSDVNISEGF 173

Query: 188 LRI-QGKGDKIRIVPLLPSVRKAILEYYDLC---PFDLNLNIQLPLFRGIRGKPLNPGVF 243
           + + + K  K R++PL   +++ +  Y       P D +      LF   RG+ ++    
Sbjct: 174 ITLTKTKNRKHRLIPLNEQMKEVLCTYMHYRDKMPLDSSAEPDSYLFVNHRGEKISHAAV 233

Query: 244 QRYIRQLRRYLGLPLSTT-----AHTLRHSF----ATHLLSNGGDLRS----IQSILGHF 290
            +  R++ +  G+  +        H LRH+F      H++ +G D+ +    I ++LGH 
Sbjct: 234 YKRFREILKVCGITHAGHGEGPRVHDLRHTFAVHSVYHMVKSGMDIYTAWPIISTLLGHH 293

Query: 291 RLSTTQIYTNVNSK 304
            + +T+ Y  +  +
Sbjct: 294 DIYSTEHYIRLALE 307


>gi|325956878|ref|YP_004292290.1| site-specific tyrosine recombinase XerS [Lactobacillus acidophilus
           30SC]
 gi|325333443|gb|ADZ07351.1| site-specific tyrosine recombinase XerS [Lactobacillus acidophilus
           30SC]
 gi|327183657|gb|AEA32104.1| site-specific tyrosine recombinase XerS [Lactobacillus amylovorus
           GRL 1118]
          Length = 358

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 67/355 (18%), Positives = 135/355 (38%), Gaps = 42/355 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT------ 54
           ME     E +  EL K   ++++   +    S  T   Y  + R+FL +L          
Sbjct: 1   METAKYLERIQIELDK-MPDYVKQYNLGTNHSLTTTYQYLTEIRRFLSWLRKEGISNAPD 59

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKI------GDRSLKRSLSGIKSFLKYLKKRK-- 106
            + +T  T+  L   ++  +I      K          ++ RS++ ++S  K+L      
Sbjct: 60  NKHVTTDTLALLRRNDVMLYIDYLGHTKNKQGHLNSPTTINRSINALRSLFKFLTITADN 119

Query: 107 -----ITTESNILNMRNLKKSNSL---PRALN--------EKQALTLVDNVLLHTSHETK 150
                    + +L + +L  + +L      L         + + L  +D+   +  ++  
Sbjct: 120 NNGMPYFDRNVMLKINSLNDTKTLNYRAHVLASHMYTGNLKFEFLKFIDHDYENKCNKQA 179

Query: 151 WID-----ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
                    R+ AI+ L+ G G+R+SE   +  Q++    + L +  KG +   VP+   
Sbjct: 180 KPGFKMNKERDMAIIALILGTGIRVSECAGVDLQDLNLKDAVLDVTRKGGQKDSVPIAEW 239

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLSTT 261
               I +Y ++     + + +   F   R       +     ++ + +     G P   T
Sbjct: 240 TLDYIQKYKNIRMKRYSADQKETAFFLTRWHNQTRRITTNAIEKMVNKYSAAFGHP--LT 297

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            H LRH+ A+ L     D   +   LG    + T +YT+V+ K     + +I D+
Sbjct: 298 PHKLRHTLASELYEVTKDQVLVAQQLGQKGTTATDLYTHVDQKVQRAALNKISDE 352


>gi|302343156|ref|YP_003807685.1| integrase family protein [Desulfarculus baarsii DSM 2075]
 gi|301639769|gb|ADK85091.1| integrase family protein [Desulfarculus baarsii DSM 2075]
          Length = 409

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 57/339 (16%), Positives = 123/339 (36%), Gaps = 41/339 (12%)

Query: 7   PEIVSFELLKER-QNWLQNLEIERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKITIQTI 63
           PE V   L ++  Q WL+      G  K T +  +YE     +   L  Y   K+    +
Sbjct: 57  PEKVKLPLFRDYAQIWLE------GFIKHTRRPATYER----YRDVLKKYVTPKLGSLPL 106

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---- 119
            Q+S  ++R  +    ++ +   S+      I   + +    ++   + ++ +       
Sbjct: 107 DQISRGQVRDLLLGIYSKGLSKASVCIVRDTISGVMGFAVDEELIPSNPVIGITKRLNLG 166

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           +   +    +  ++    ++    H      +            +  G+R+ E L+L   
Sbjct: 167 RDDGNTVEPMTHEEVALFLETCAKHYPERYPF--------FLTAFRTGMRLGELLALQWG 218

Query: 180 NIMDDQSTLRIQG----------KGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQ 226
           +I      + ++           K  K R V +   + + +         +         
Sbjct: 219 DIDWHGRFIVVRRSFKGGYTTSTKTGKARRVDMSNQLFETLCALQTKRKREAVGAGRGEL 278

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
            PL     G P+     + + +++ +  GL      H +RH+FA+ LLS G     ++  
Sbjct: 279 APLIFHKGGLPIAQNSARNHFKRILQKAGL-REMRVHDIRHTFASLLLSAGQSPVYVKEQ 337

Query: 287 LGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LGH  +S T  IY ++   +  D + ++ D+  P  T +
Sbjct: 338 LGHSSISMTVDIYGHLIPSSNRDAVNQL-DEAAPECTPR 375


>gi|158520653|ref|YP_001528523.1| integrase family protein [Desulfococcus oleovorans Hxd3]
 gi|158509479|gb|ABW66446.1| integrase family protein [Desulfococcus oleovorans Hxd3]
          Length = 397

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/270 (19%), Positives = 108/270 (40%), Gaps = 24/270 (8%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRT------QKIGDRSLKRSLSGI-KSFLKYL 102
              +   K+  + +  ++  +I   +S  R       +     ++K  +  + + F    
Sbjct: 125 YQTHLAPKLGQKRLDAITQLDIERLLSGLRKGTSKRGKPYAAATIKHQIVLLTRMFNVAA 184

Query: 103 KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
           +  K T  +    +   + +N     L + +   L+D +        +W D  ++  +  
Sbjct: 185 RWGKYTGPNPCKLIAKPRLNNQKTGFLTDDELTRLLDVL-------EQWPDRMSAGFIAF 237

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           L   GLR  E   LT Q++  D+ TL ++  KG +  ++PL      A+          L
Sbjct: 238 LLHTGLRRGELFRLTWQDVNMDRQTLTVRDPKGGRDTVLPLSEKAIDAL--------NSL 289

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
               + P F            F+    ++++   LP     H LRH FA+ L+S G +L 
Sbjct: 290 PREHETP-FVFYGRNGAQRADFRHPWYRIKQAAALPEGFRLHDLRHHFASALVSAGTNLY 348

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           ++Q++L H   + TQ Y +++ +   D + 
Sbjct: 349 TVQALLTHKSAAMTQRYAHLSDQALRDAVK 378


>gi|201067901|ref|ZP_03217787.1| hypothetical protein CJBH_2432 [Campylobacter jejuni subsp. jejuni
           BH-01-0142]
 gi|200004519|gb|EDZ04997.1| hypothetical protein CJBH_2432 [Campylobacter jejuni subsp. jejuni
           BH-01-0142]
          Length = 312

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 68/314 (21%), Positives = 123/314 (39%), Gaps = 25/314 (7%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +S +L +  + +L++++     S  T   Y     +F+ +   Y +E      I  +  T
Sbjct: 8   ISEDLERWIETYLKHIQAL-SYSNNTSLLYRRILLEFVEYSLDYQDEMQ----INDIKMT 62

Query: 70  EIRAFISKRRTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL----- 119
            +  F++          K+  ++    L  + SF  ++            +M+ +     
Sbjct: 63  FLVNFLNYLENNSKNGNKLSKKTKITYLRVLTSFFSFISDNNDDLFVFSFDMKKIRFRTE 122

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K    L   LNE + + L + +    + +  +   RNS ++ L+   GLRISEAL++   
Sbjct: 123 KSEEKL-NYLNENEIIRLNNVLEKEKAKKEVYNSFRNSLLIKLMLYGGLRISEALNVKLC 181

Query: 180 NI---MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
           +     D+   + I GKG K +   +        LEY     F  N+     + +   GK
Sbjct: 182 DFEEVDDEILKISIIGKGGKEQFAFIKKEEVDDELEY-----FKENIQDSDYIMQTSTGK 236

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            LN       +  +     +      H LRH+ A  L + G +L  IQ IL H  L+TT 
Sbjct: 237 HLNRSNAFLIVNNIYAKALISKK-GLHLLRHTLAMRLTAKGTNLVVIQKILRHANLNTTT 295

Query: 297 IYTNVNSKNGGDWM 310
           IY    +      +
Sbjct: 296 IYAKATNDTVKAAL 309


>gi|300215391|gb|ADJ79804.1| Integrase [Lactobacillus salivarius CECT 5713]
          Length = 365

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 63/356 (17%), Positives = 141/356 (39%), Gaps = 57/356 (16%)

Query: 13  ELLKERQNWLQNLEIERG---LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTI 63
           ELL E   ++ +  I +     S  T+  Y  +  QFLI+L             I  +++
Sbjct: 12  ELLHELPYYMNDFVIVKTADEYSPNTILEYLKNFHQFLIWLIENHYINENKTSDIAPESL 71

Query: 64  RQLS---YTEIRAFISKRRTQK----------------IGDRSLKRSLSGIKSFLKY--- 101
            +L+    TE ++++ +R+ Q                 +   +++R+++ +K   K+   
Sbjct: 72  DKLTVRTATEYKSYLLRRKKQNKKALDKNGHKEESTETLSKVTIQRNITALKVIFKFLSR 131

Query: 102 ----LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR-- 155
                +++   T   + ++ N+    +L    +  +    +D+         K +  +  
Sbjct: 132 SANNSQEKPFLTHDVMQSIDNVADKQTLQARADALEEKLFLDDETDEYLQYIKEVYPQSL 191

Query: 156 --------------NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
                         + AI  L+ G GLR+SE +++  +++  + + + +  KG+K   V 
Sbjct: 192 STQAKKFYNRDVERDLAINALMLGSGLRLSEVVNINIEDLDFENNRVAVLRKGNKKDSVR 251

Query: 202 LLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRG---KPLNPGVFQRYIRQLRRYLGLP 257
           +     + +  Y D+       +  +   F  I     K +     ++ + +  +  G  
Sbjct: 252 IAAFAMEYLANYRDIRASRYRADKYEKAFFLAISRGGSKRITGSAIEKMVSKYSK--GFK 309

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +  T H LRH+ AT L     +L      LGH   +TT +YT++++    D +  +
Sbjct: 310 VRVTPHKLRHTLATRLYKQTNNLVLTAQQLGHSSTATTTLYTHIDNDETTDALNSL 365


>gi|196044477|ref|ZP_03111712.1| transposition regulatory protein TnpA [Bacillus cereus 03BB108]
 gi|196024512|gb|EDX63184.1| transposition regulatory protein TnpA [Bacillus cereus 03BB108]
          Length = 371

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 59/354 (16%), Positives = 132/354 (37%), Gaps = 80/354 (22%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+ ++   G S  T ++Y    + F  +L        T +  + +S  ++  FI   R
Sbjct: 30  KYLKYIDTT-GKSANTQRTYCYSLKHFFTYLDE------TNKDYKYISLEDLVEFIGWLR 82

Query: 80  TQKIGDR--------------SLKRSLSGIKSFLKYLKKRKITTES-------------- 111
           +     +              ++  +++ I +F  YL + +                   
Sbjct: 83  SPYKSPKVTPLQQEKATRTEKTINLTITVIANFYDYLFRNEEIQNDMMEKLMKQVFTGGH 142

Query: 112 ---------------NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
                          +I N+  LK+     + L ++Q   +++             + R+
Sbjct: 143 SRYKSFLHHINKDKPSIRNVLKLKEPRKKLKILTKEQVQQVLNAT----------TNIRD 192

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQ-----------GKGDKIRIVPLLP 204
           + ++ LL+  GLRI E LSL  ++ + D     RI+                 R + +  
Sbjct: 193 TFLIQLLFETGLRIGEVLSLFIEDFIFDHAKGHRIRLVDRGELENGAKLKTGEREIFVSQ 252

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRG----KPLNPGVFQRYIRQLRRYLGLPLST 260
           S+     +Y      +L+++    +F  +RG    KP+     +   ++L++  G+  + 
Sbjct: 253 SLMDLYDDYLYEIMDELDVDTNF-VFIKLRGENAGKPMTYSDVESLFKRLKKKTGI--NL 309

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
             H  RH+ AT       +++ +Q  LGH ++ TT  +Y + + +   +   + 
Sbjct: 310 HPHLFRHTHATIYYQKTKNIKQVQERLGHSQIQTTMNLYLHPSEEEIREDWKKA 363


>gi|258438229|ref|ZP_05689513.1| transposase A [Staphylococcus aureus A9299]
 gi|257848273|gb|EEV72264.1| transposase A [Staphylococcus aureus A9299]
          Length = 361

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 70/351 (19%), Positives = 133/351 (37%), Gaps = 69/351 (19%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           FE+++  + +++ L+   G +  T+++Y    + F  F++    E      +  L + ++
Sbjct: 23  FEVIEPVKRFIKYLDNT-GKAPNTIKTYCYHLKLFYEFMSQSRIE------LGDLQFEDL 75

Query: 72  RAFISKRRT--------------QKIGDRSLKRSLSGIKSFLKY---------------- 101
             F+   R                K  + S+   L+ + SFL+Y                
Sbjct: 76  ANFVGWLRNPAGHLKVIDIQPKKAKREETSVNSILNAVTSFLEYLNRTENFKAIDMSKEA 135

Query: 102 --LKKRKITTE-----SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
                +          S   N+  L+    L + L   Q   +++               
Sbjct: 136 RGRNFKGFLHHISKGRSYKKNILKLRVKKKLVQVLEHGQVKAIIEAC----------HTK 185

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----------KGDKIRIVPLLP 204
           R+  ++ L+Y  GLRI EALSL  ++I    + + I+           K  K R + +  
Sbjct: 186 RDKLLIMLMYEGGLRIGEALSLRIEDISTWDNQINIRPRDHNENGAYIKLKKERTIDVSK 245

Query: 205 SVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            +     +Y      +   +  I + L     G PL        IR+L +  G+    TA
Sbjct: 246 ELMALYTDYLVHEYGEDLDHDYIFINLKDSYFGHPLKYQSVLDLIRRLGKRTGITF--TA 303

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMME 312
           H LRH+ AT L+ +G D   +Q  LGH  + TT   Y +++ ++  +   +
Sbjct: 304 HILRHTHATELIRSGWDAAYVQKRLGHAHVQTTLDTYVHLSDQDMKNEYKK 354


>gi|297565034|ref|YP_003684006.1| integrase family protein [Meiothermus silvanus DSM 9946]
 gi|296849483|gb|ADH62498.1| integrase family protein [Meiothermus silvanus DSM 9946]
          Length = 251

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 83/207 (40%), Gaps = 15/207 (7%)

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           +L +    K   +   L+ +    L++     +  +          +L  L+  G R+SE
Sbjct: 56  LLELTPPPKRRRVVERLSPEAVSRLLEAAYRLSPRK-----PVYGLMLKTLFYTGCRVSE 110

Query: 173 ALSLTPQNIMDDQ---STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
            + L  Q+   D         + K   +R VP+LP++ + +  +       L    +  L
Sbjct: 111 FVFLRAQDAYLDGEAPHLYVHRAKKGSVRYVPILPALAQELRVH-------LAGRTRGYL 163

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F   R +  +P   Q+ I+Q     G+      H LRHS A  LL  G  L  +Q  LGH
Sbjct: 164 FESNRHQRYSPRAIQKLIQQAAAEAGIEKRVYPHLLRHSVAQILLDRGMPLEQLQKFLGH 223

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               TTQIY   +  + G+    ++ +
Sbjct: 224 QDPKTTQIYAESSLASVGESYRRVFTK 250


>gi|94992469|ref|YP_600568.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes
           MGAS2096]
 gi|94545977|gb|ABF36024.1| Integrase/recombinase xerD [Streptococcus pyogenes MGAS2096]
          Length = 368

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/323 (20%), Positives = 118/323 (36%), Gaps = 45/323 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  + ++F  +L             I + T+  L+  ++ AF+   R     
Sbjct: 45  YSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLEAFVLYLRERPSL 104

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-------- 126
                 + +   ++ R+LS + S  KYL +     +      RN+ K  S          
Sbjct: 105 NTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAS 164

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDA---------------RNSAILYLLYGCGLRIS 171
           RA N KQ L L D  L    +  K  +                R+ AI+ LL   G+R+S
Sbjct: 165 RAENIKQKLFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLS 224

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLF 230
           EA++L  +++  +   + +  KG K   V +    +  +  Y  +         Q L  F
Sbjct: 225 EAVNLDLKDVNLNMMIIEVIRKGGKRDSVNVAGFAKGYLESYLAVRQRRYKAEKQDLAFF 284

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +      +    T H LRH+ AT L         +   L
Sbjct: 285 LTEYRGVPNRMDASSIEKMVGKYSEDFKI--RVTPHKLRHTLATRLYDATKSQVLVSHQL 342

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH     T +YT++ +    + +
Sbjct: 343 GHSSTQVTDLYTHIVNDEQKNAL 365


>gi|168185276|ref|ZP_02619940.1| tyrosine recombinase XerD [Clostridium botulinum Bf]
 gi|182671679|gb|EDT83640.1| tyrosine recombinase XerD [Clostridium botulinum Bf]
          Length = 212

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 93/232 (40%), Gaps = 25/232 (10%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNEKQALTLVDN 140
           +  +S+ R L+ I    K          +  +  + +K+     L   L   +   ++  
Sbjct: 1   MKAKSINRKLTSINQLFKS------ININYGVKCKRMKEQKQTFLDDVLTRDEIEKMLKK 54

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                       + R+ AI+  LY  GLR+SE L L  ++I   + ++ I+GKG K R +
Sbjct: 55  C---------GTNIRDKAIIMTLYKTGLRVSELLQLRIRDI--RKKSIEIEGKGGKYRYI 103

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-S 259
            +   +++  L+Y  +            LF G  G+ ++     R I++      +    
Sbjct: 104 IVPKELKEIWLQYLKVR----KPVETDKLFVGTNGE-MHRHNINRIIKKYAVQARITKGK 158

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              H LRHSF   L      +  I  + GH  L+TT+IYT    K   + + 
Sbjct: 159 AHPHALRHSFCKALAIQNVGIEVIADLAGHEDLNTTRIYTRQTQKELREKIE 210


>gi|257900316|ref|ZP_05679969.1| phage integrase [Enterococcus faecium Com15]
 gi|257838228|gb|EEV63302.1| phage integrase [Enterococcus faecium Com15]
          Length = 361

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 62/354 (17%), Positives = 138/354 (38%), Gaps = 51/354 (14%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQL 66
           +I+   +    ++++Q+   ++  S  T   Y  + + F  +L +       +I +IRQL
Sbjct: 11  DIIILHMPDYIKDFVQD-REDKDQSPRTTLEYLKNYKLFYEWLLSESIVPDTSITSIRQL 69

Query: 67  SYTEIRAFISKRRTQ--------------------KIGDRSLKRSLSGIKSFLKY----- 101
           +  ++  + S  + +                     +   ++ R+++ +K   KY     
Sbjct: 70  TAYDLNLYKSHLKRRAKENVKKDTTKAKLEDNNNLGLSTSTINRNITALKVLFKYLSKSS 129

Query: 102 --LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD----NVLLHTSHETK----- 150
                +     + +  +  +    +L    N  +    +D    N L + ++E K     
Sbjct: 130 NNPLGKPYLDNNPMDQVTTITDKTTLAARANAIEKKLFLDEDTQNYLDYIANEYKNTLSK 189

Query: 151 -------WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
                      R+ AI  L+ G GLR+SE +++   ++  D++ + +  KG+K   V + 
Sbjct: 190 RALIYYHRDVERDLAINALILGSGLRLSEVVNINLDDLSLDKNKVVVTRKGNKRDAVNIA 249

Query: 204 PSVRKAILEYYDLCPFDLNL-NIQLPLFRGIRG---KPLNPGVFQRYIRQLRRYLGLPLS 259
               + +  Y  +      +   +  LF  I     K ++    +R + +  +  G  + 
Sbjct: 250 AFAMEYLANYLAIRKERYKVTENEKALFLAIYQGEAKRISGIAIERMVAKYSK--GFRVQ 307

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            + H LRH+ AT L      L      LGH   +TT +YT++++    D +  +
Sbjct: 308 VSPHKLRHTLATRLYQQTNSLVLTAQQLGHSSTNTTTLYTHIDNAATIDALNAL 361


>gi|317480814|ref|ZP_07939897.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316903018|gb|EFV24889.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 409

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 64/285 (22%), Positives = 119/285 (41%), Gaps = 25/285 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSLKR 90
           +  T+ +Y    R    F+   TE K++     QL+   IR +       +++   +++ 
Sbjct: 130 APTTMSTYVYTRRTLAEFIK--TEFKVSDLAFGQLNEQFIRDYQDFCLEKKRLAMETVRH 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            LS +K   +   K   + + +  + +  K+  + P+AL+ +    L D  +     E +
Sbjct: 188 YLSILKKICRIAYKEGHSEKYHFCHFKLPKQKETTPKALSRENFEKLRDLEI----PEKR 243

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRI---QGKGDKIRIVPLLPSV 206
                   +       G   ++ +S+T +N+  DD+ +L +   + K D +  V LLP  
Sbjct: 244 RPHVITRDLFLFACYTGTAYADVVSITRENLFWDDEGSLWLKYRRKKTDYLGRVKLLPEA 303

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              I +Y D        + +  LF      P +    +  ++ LR   GL      H  R
Sbjct: 304 LALIEKYRD--------DTRATLFP-----PQDYHTLRANMKSLRLMAGLSQDLVYHMGR 350

Query: 267 HSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           HSFA+ + L  G  + +I  +LGH  + TTQ+Y  V  K   + M
Sbjct: 351 HSFASLVTLEEGVPIETISKMLGHSNIKTTQVYARVTPKKLFEDM 395


>gi|27383304|ref|NP_774833.1| site-specific integrase/recombinase [Bradyrhizobium japonicum USDA
           110]
 gi|27356478|dbj|BAC53458.1| blr8193 [Bradyrhizobium japonicum USDA 110]
          Length = 366

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 84/213 (39%), Gaps = 15/213 (7%)

Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
           T S    +   +    +   L   +   ++         +T     R+ A L  L   G 
Sbjct: 63  TTSPARRIPTKRAHIEVTHHLTNAEVEAII-----AAPDQTTSRGRRDRAFLLFLARTGA 117

Query: 169 RISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           R+SEA  +   ++  ++    + + GKG + R+VP+   + +++          L  +  
Sbjct: 118 RVSEATGVNANDLQLERGRPQVLLHGKGRRDRVVPIPQDLVRSLTNLLSERG--LAHHEP 175

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP------LSTTAHTLRHSFATHLLSNGGDL 280
            P+F G+  + L        +R+     G           + H  RHS A  LL +G DL
Sbjct: 176 RPIFVGVHNERLTRFGATHIVRRAASQAGSTRPSLEGKPISPHIFRHSLAMKLLRSGVDL 235

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            +IQ+ LGH +++TT  Y   + +     + + 
Sbjct: 236 LTIQAWLGHAQVATTHRYAAADVEMMRRGLEKA 268


>gi|94994458|ref|YP_602556.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes
           MGAS10750]
 gi|94547966|gb|ABF38012.1| Integrase/recombinase xerD [Streptococcus pyogenes MGAS10750]
          Length = 373

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 66/323 (20%), Positives = 118/323 (36%), Gaps = 45/323 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  + ++F  +L             I + T+  L+  ++ AF+   R     
Sbjct: 50  YSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLEAFVLYLRERPSL 109

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-------- 126
                 + +   ++ R+LS + S  KYL +     +      RN+ K  S          
Sbjct: 110 NTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAS 169

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDA---------------RNSAILYLLYGCGLRIS 171
           RA N KQ L L D  L    +  K  +                R+ AI+ LL   G+R+S
Sbjct: 170 RAENIKQKLFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLS 229

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLF 230
           EA++L  +++  +   + +  KG K   V +    +  +  Y  +         Q L  F
Sbjct: 230 EAVNLDLKDVNLNMMIIEVIRKGGKRDSVNVAGFAKGYLESYLAVRQRRYKAEKQDLAFF 289

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +      +    T H LRH+ AT L         +   L
Sbjct: 290 LTEYRGVPNRMDASSIEKMVGKYSEDFKI--RVTPHKLRHTLATRLYDATKSQVLVSHQL 347

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH     T +YT++ +    + +
Sbjct: 348 GHSSTQVTDLYTHIVNDEQKNAL 370


>gi|308184464|ref|YP_003928597.1| integrase-recombinase protein [Helicobacter pylori SJM180]
 gi|308060384|gb|ADO02280.1| integrase-recombinase protein [Helicobacter pylori SJM180]
          Length = 356

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 63/286 (22%), Positives = 126/286 (44%), Gaps = 21/286 (7%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y     +F  +      +K+++++++ +    +  F+S   T  +   + K     +
Sbjct: 73  INTYALPLLKFYEYA-----QKLSLKSLKSIDEVMLAEFLS-VYTGGLSLATKKNYRIAL 126

Query: 96  KSFLKYLKKRK-------ITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLLHTS 146
                Y+ K+              + N+  + +   N LP  LN ++    ++   +   
Sbjct: 127 LGLFSYIDKQNQDENEKSYIYNITLKNISGVNQSAGNKLPTHLNNEELEKFLEG--IDKI 184

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLP 204
             +  + ARN  ++ ++   G+R +EAL L  ++   +    T+ I+GKGDK R V L  
Sbjct: 185 EMSAKVRARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLKA 244

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AH 263
              +++L+ + +      +   L LF   +G  L      + + ++  + GL      AH
Sbjct: 245 FHIESLLKEWLIERELYPVKNDL-LFCNQKGMALTQAYLYKQVERIINFAGLRREKNGAH 303

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            LRHSFAT L     DL  +Q  LGH  L+T++IYT+ + +   + 
Sbjct: 304 MLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLKEA 349


>gi|302527366|ref|ZP_07279708.1| tyrosine recombinase XerC [Streptomyces sp. AA4]
 gi|302436261|gb|EFL08077.1| tyrosine recombinase XerC [Streptomyces sp. AA4]
          Length = 335

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 68/305 (22%), Positives = 117/305 (38%), Gaps = 16/305 (5%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQF-LIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           + +Q +       +  S  T  +Y  D      + LA    +++    + +L+   +RA 
Sbjct: 5   EAQQAFFAARRPRKD-SPHTTAAYRRDLAGITALLLAELGRDEV---DVEELTAPVLRAA 60

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
                       S+ R+ S    FL +     +   + +  +   K     P+ L  ++ 
Sbjct: 61  FGAFADSH-AKSSVLRAWSTWNQFLTFCVSDGLLAGNPMGAVARPKTPPLTPKPLRGEET 119

Query: 135 -LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR--IQ 191
              L+                R+  +L L    GLR +E  +LTP++++     LR  + 
Sbjct: 120 PEQLLTAAADGARRARDPWPERDVLVLALGLVAGLRAAEMRALTPRSVVGRDGELRLHVH 179

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN---IQLPLFRGIRGKPLNPGVFQRYIR 248
           GKG + R +P+ P++ K I +Y   C             PL R   G P+  G  +  ++
Sbjct: 180 GKGSRDRSIPVQPALAKLIEDYQASCRRRFPRQRFPASEPLLRDRAGNPIGRGALEYLVK 239

Query: 249 QLRRYLGLPLST----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
              R+ GL          H LRH+FAT L  +G     I S+LGH  L T+Q Y     +
Sbjct: 240 SCYRWAGLHDRVPTGANLHALRHTFATRLAEDGATASEIMSLLGHASLVTSQNYIEATGR 299

Query: 305 NGGDW 309
                
Sbjct: 300 EQRAA 304


>gi|303327829|ref|ZP_07358269.1| prophage DLP12 integrase [Desulfovibrio sp. 3_1_syn3]
 gi|302862190|gb|EFL85124.1| prophage DLP12 integrase [Desulfovibrio sp. 3_1_syn3]
          Length = 320

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 64/311 (20%), Positives = 109/311 (35%), Gaps = 33/311 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L ++ + +       +S+  D R                + + ++   E+  ++     
Sbjct: 39  YLPHVRLRK-------RSWRVDER----IARQRLSPAFGARRLDRIRRGEVEDWLRDLAE 87

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLV 138
           + +   +  R L+  KS         +     S   ++   K      R L   +A  L+
Sbjct: 88  EGLCPATCNRILAVFKSVCSLAMLHGVLPAGQSPCADVPPFKIHLQRERYLAPDEAQRLM 147

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKI 197
             +      E        +A + LL   G R SE L    +N+  D   L +   K  K 
Sbjct: 148 RELERSARPE--------AAAIRLLLLTGARKSEILKARWENVRLDLRLLTVPLSKSGKP 199

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGL 256
           R +PL  +    I                  LF G    KPL+      +   LRR LGL
Sbjct: 200 RHLPLSDAAVAVIRA-------LPRGPGCPWLFPGHAPGKPLSD--VYLFWDGLRRGLGL 250

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                 H LRH+FA+ L++ G  L  +Q +LGH    TT  Y ++   +       +   
Sbjct: 251 A-DVRIHDLRHTFASFLVNAGHSLYEVQKLLGHSDPRTTMRYAHLGQASLLAAAQSVSCF 309

Query: 317 THPSITQKDKK 327
             P   +K+ K
Sbjct: 310 LSPGKGRKNTK 320


>gi|317505704|ref|ZP_07963596.1| integrase [Prevotella salivae DSM 15606]
 gi|315663181|gb|EFV02956.1| integrase [Prevotella salivae DSM 15606]
          Length = 346

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 56/278 (20%), Positives = 103/278 (37%), Gaps = 14/278 (5%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           R    F+       I I++I +  + E R F+   + + +   S+   L  +   +    
Sbjct: 79  RMLCEFIKDLGSTDIEIRSITEELFEEYRFFL---KKKGLKGSSINNYLCWLSRLMFRAV 135

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
            ++I   +   +    K   ++ R L++     L+   +  +  E          +    
Sbjct: 136 SQRIIRYNPFEHAEYEKVEKTI-RFLSKSYVANLMAMKMCDSDAELA------RRMFIFS 188

Query: 164 YGCGLRISEALSLTPQNIM---DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
              GL I++   LT  +I    D Q  +R  + K     IVPL P  +  I +   L   
Sbjct: 189 CFTGLAIADMEHLTSGHIKSAADGQMYIRKERQKTKVESIVPLHPIAKTIIAQQRQLQAV 248

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
               N      R I     +  V    +  + +  G+    + H  RH+F T  LS G  
Sbjct: 249 KEEGNNTDMDNRLIFQPCCSRSVLAAKLSIVGKACGIKQRLSYHMGRHTFGTMCLSAGIP 308

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           + SI  ++GH  +++TQIY  V      + M  +  + 
Sbjct: 309 IESIAKMMGHASIASTQIYAQVTDCKISEDMDRLIAKH 346


>gi|225028560|ref|ZP_03717752.1| hypothetical protein EUBHAL_02839 [Eubacterium hallii DSM 3353]
 gi|224954126|gb|EEG35335.1| hypothetical protein EUBHAL_02839 [Eubacterium hallii DSM 3353]
          Length = 286

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/285 (18%), Positives = 110/285 (38%), Gaps = 27/285 (9%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           IE   S+ T++ Y  D R+F  ++    +++        ++   + ++      +     
Sbjct: 18  IEEEKSQATIEKYMRDVRKFFQYVEEMGKKEG-------ITKEIVLSYKRSLIEE-YAPS 69

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S+   L+ +  F K     +   +S  +  R  +      R L +++   L+        
Sbjct: 70  SVNSMLASLNHFFKVNHWYECIVKSLKIQQRTFRAKE---RELTKEEYYRLLRAAQKEGK 126

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
           +           IL  + G G+R+SE   +T + +   ++ + ++ K    R + L P +
Sbjct: 127 YRL-------YCILQTICGSGIRVSELKYITVKAVTRGRAVIFMKNK---TRTILLPPKL 176

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-STTAHTL 265
            + + +Y         +     +F   RG P++       ++ L    G+       H L
Sbjct: 177 CRLLKDYCKQEKITSGM-----IFITRRGNPVDRSNILHEMKNLCGTAGVEREKVFPHNL 231

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           RH FA        D+  +  ILGH  ++TT+IYT  + +     +
Sbjct: 232 RHLFAYTYYKAEKDIAHLADILGHSSINTTRIYTMGSGEEEMKQL 276


>gi|303242645|ref|ZP_07329119.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302589784|gb|EFL59558.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 418

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 73/314 (23%), Positives = 124/314 (39%), Gaps = 22/314 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L+    E  L++ TL++       F  FL           T+  L   E  AF    
Sbjct: 113 QEYLEFCRNELLLAEKTLENKRLYLYDFCKFLNSKNI------TLNDLCIEETEAFFISM 166

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM--RNLKKSNSLPRALNEKQALT 136
                   +  R+LS    FL+Y    K + +   + +   N +K   LP    E +   
Sbjct: 167 NYTLASRHNAARNLS---LFLRYAYDNKYSQKDTSIYILPDNYRKDCKLPTTYEEDEIKE 223

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195
           ++ +V   +S     I  R+  IL L    GLR  +  +L   +I  D++ +RI Q K D
Sbjct: 224 VLISVERASS-----IGKRDYLILLLATEYGLRAKDITNLCFDDIDWDRNVIRINQHKTD 278

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYL 254
                PLL S+  AI++Y        +    +       +GKPL+       + +  +  
Sbjct: 279 FPVEFPLLASIGNAIIDYLKYGRPLSDAPQIIVSAENANKGKPLSSPTIHSVVTKYMKRA 338

Query: 255 GLP----LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           G+          H +RHS AT+LL     +  I +++GH R  TT  Y +V+       +
Sbjct: 339 GIKNWQNKKHGPHAMRHSLATNLLKKNISMPIISTVMGHQRTETTSTYISVDYGRLKQCV 398

Query: 311 MEIYDQTHPSITQK 324
           + +     P   ++
Sbjct: 399 LPMPAMHSPFYNKE 412


>gi|319641219|ref|ZP_07995919.1| integrase [Bacteroides sp. 3_1_40A]
 gi|124107947|gb|ABM90616.1| integrase [Bacteroides uniformis]
 gi|145308091|gb|AAR05648.2| integrase [Bacteroides uniformis]
 gi|317387152|gb|EFV68031.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 377

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 108/280 (38%), Gaps = 26/280 (9%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR---RTQKIGDRSLKRSLS 93
             Y+ D    +  L  Y  E++ +  I +        ++      R +++ + +L     
Sbjct: 110 DGYQIDIT--IRILKDYAGERMLMDQIDKTFCQNYLDYLQSEYRSRGKRVSNYTLHTYYR 167

Query: 94  GIKSFLKYLKKRKITTESNILNM---RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +   L    + +I   +    +     ++   S    +  ++   L+   + + S +  
Sbjct: 168 VLNGALNAAVRAEIIKSNPFTKISKSEKIRLPESKRSYMTIEEVRALIATPMKNESVKGA 227

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
           ++ +           CGLRIS+ + L  +++  D+   R+     K +    LP   +A+
Sbjct: 228 YLFSC---------FCGLRISDIIKLQWKDVFVDRGQYRLSVSMQKTKEPIYLPLSPEAL 278

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
              +     D   +  +           +P +    I+   +  G+    T HT RH+FA
Sbjct: 279 K--WMPARGDKTPDDHVFDLP-------SPAMVNILIKPWAKAAGINKRFTFHTARHTFA 329

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           T +L+ G DL +   +LGH  +  TQ+Y  + ++   D +
Sbjct: 330 TMMLTLGADLYTTSKLLGHADVKMTQVYAKIINQKKDDAV 369


>gi|91791328|ref|YP_552278.1| phage integrase [Polaromonas sp. JS666]
 gi|91701209|gb|ABE47380.1| phage integrase [Polaromonas sp. JS666]
          Length = 557

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 64/315 (20%), Positives = 114/315 (36%), Gaps = 36/315 (11%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +ERG +  +L +   D   +  FL   T     +   R  S  E R F        +  R
Sbjct: 251 VERGCALSSLAT--EDAVAYRAFLRRPTPRSRWVGPPRPRSSPEWRPF-----AGGLSAR 303

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT- 145
           S    LS + +  ++L +++    +    +   K     P  ++  ++ +  +  LL T 
Sbjct: 304 SAAHGLSVLSAMFRWLIEQRYVLANPFSGI---KVRGVQPAGMDTSRSFSDAEWALLRTV 360

Query: 146 SHETKWIDARN-------SAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDK 196
           +   +W              +L   Y  GLR SE +  T   I    ++  L + GKG +
Sbjct: 361 ADGLEWSYGWQPAAAQRLRFVLDFAYATGLRASELVHATLGAIEVDHEERWLHVVGKGHR 420

Query: 197 IRIVPLLPSVRKAILEYYDLC---PFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRR 252
              V L P  R A+  Y             +  +PL   I G+  +N       +++   
Sbjct: 421 AGRVTLPPLARSALDRYLVQRGLPTTPQKWSPDIPLIGNIGGEAGINRARLWVVMKRFFA 480

Query: 253 ------------YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                               T H +RH+ A+H L  G +L +++  L H  ++TT IY +
Sbjct: 481 TVADILVEDNPTLAAKLRRATPHWMRHTHASHALQGGAELTAVRDNLRHSSIATTSIYLH 540

Query: 301 VNSKNGGDWMMEIYD 315
            +       M   + 
Sbjct: 541 SDEVKRARQMDAAFA 555


>gi|317009310|gb|ADU79890.1| XerCD family integrase/recombinase [Helicobacter pylori India7]
          Length = 355

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 68/287 (23%), Positives = 128/287 (44%), Gaps = 23/287 (8%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y     +F  +      +KI++++++ +    +  F+S   T  +   + K     +
Sbjct: 72  INTYALPLLKFYEYT-----KKISLKSLKSIDEVLLAEFLS-VYTGGLSLATKKNYRIAL 125

Query: 96  KSFLKYL--KKRKITTESNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHT 145
                Y+  + +    +S I N+  LK          N LP  LN ++    ++   +  
Sbjct: 126 LGLFSYIDKQNQDENEKSYIYNI-TLKNISGANQSAGNKLPTHLNNEELEKFLEG--IDK 182

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLL 203
              +  + ARN  ++ ++   G+R +EAL L  ++   +    T+ I+GKGDK R V L 
Sbjct: 183 IEMSAKVCARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLK 242

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-A 262
               +++L+ + +      +   L LF   +G  L      R + ++  + GL      A
Sbjct: 243 AFHIESLLKEWLIERELYPVKNDL-LFCNQKGSALTQAYLYRQVERIINFAGLRREKNGA 301

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           H LRHSFAT L     DL  +Q  LGH  L+T++IYT+ + +   + 
Sbjct: 302 HMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLKEA 348


>gi|281424440|ref|ZP_06255353.1| site-specific recombinase, phage integrase family [Prevotella oris
           F0302]
 gi|281401439|gb|EFB32270.1| site-specific recombinase, phage integrase family [Prevotella oris
           F0302]
          Length = 285

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 104/287 (36%), Gaps = 34/287 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            L+  T+ SY      F                 ++++   + A+      +    +++ 
Sbjct: 31  NLAPNTITSYVWTVNYFFKHY-------------KEVNKKNLLAYKGFL-VESFKPQTVN 76

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             L  I  FL+Y K+ K+        ++ +K        L  +  ++  D   L T  + 
Sbjct: 77  LRLQAINKFLEYSKQEKL-------KVKFVKVQQK--NFL--ENVISDADYKFLKTKLKA 125

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              D     I++ +   G R+SE L +  +++      L +  KG KIR + +  ++R  
Sbjct: 126 DGYDEW-YFIIWFMAATGARVSELLQIKAEHVQV--GYLDLYSKGGKIRRLYIPKNLRTE 182

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHS 268
             ++               +F    G  +      + ++      G+       H+ RH 
Sbjct: 183 ANKWIKEKGL-----TSGYIFLNRFGNRITTRGIAQQLKYFAEKYGINRDVVYPHSFRHR 237

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           FA + L    DL  +  ++GH  + TT+IY    +      + +I +
Sbjct: 238 FAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDKIVN 284


>gi|121594243|ref|YP_986139.1| phage integrase family protein [Acidovorax sp. JS42]
 gi|120606323|gb|ABM42063.1| phage integrase family protein [Acidovorax sp. JS42]
          Length = 566

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 74/329 (22%), Positives = 115/329 (34%), Gaps = 38/329 (11%)

Query: 16  KERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           KE +  +    +ERG  LS LT +    D   F  FL         I   R  S  E R 
Sbjct: 243 KEAERLILWAVVERGRALSSLTTE----DAVAFRAFLRHPAPRARWIGPARPRSSPEWRP 298

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS----LPRAL 129
           FI       +  RS+  +LS + +  ++L +++    +    ++    S S    + R  
Sbjct: 299 FI-----GGLSARSVAYALSVVGAMFRWLIQQRYLLANPFAGIKVRGASRSESLAVTRVF 353

Query: 130 NEKQ--ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD--- 184
            E +   +  V   L            R   +L   Y  GLRI E +  T   I  D   
Sbjct: 354 GEGEWSVIQAVAEGLEWGHGWQAPAAQRLRFVLDFAYATGLRIGELVGATLGQIETDAHG 413

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR------------- 231
              L + GKG K   V L P    A+  Y       +      PL               
Sbjct: 414 DRWLHLVGKGSKAGKVALPPLACAALDRYLMQRKLPITPARWDPLAPLIGSLDQESTAGI 473

Query: 232 -GIRGKPLNPGVFQRYIRQLRRY----LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
              R   +    F +    + +            + H +RH+ ATH L+ G +L +++  
Sbjct: 474 TATRLWSVMRRFFTKVAEVIEKDSPATAEKLRRASPHWMRHTHATHALARGAELTTVRDN 533

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L H  +STT IY + +       M E + 
Sbjct: 534 LRHASISTTSIYLHGDEVKRAREMGEAFA 562


>gi|24379472|ref|NP_721427.1| site-specific tyrosine recombinase XerS [Streptococcus mutans
           UA159]
 gi|34222767|sp|O69155|XERS_STRMU RecName: Full=Tyrosine recombinase xerS
 gi|24377409|gb|AAN58733.1|AE014942_9 putative integrase/recombinase; XerC-like [Streptococcus mutans
           UA159]
          Length = 356

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 118/326 (36%), Gaps = 45/326 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  + R+F  +L             I ++T+  LS  ++ +FI   R     
Sbjct: 33  YSFTTLYEYLKEYRRFFEWLIDSGVSNANKLADIPLETLEHLSKKDMESFILYLRERTLL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                 Q +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 93  NTKNKRQGVSQTTINRTLSALSSLYKYLTEEVENADGEPYFYRNVMKKVSTKKKKETLAA 152

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHET--------KWIDARNSAILYLLYGCGLRIS 171
           +  N   +     + +  ++ V     H+         +    R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGNETMEFLEYVDCEYEHKLSKRALSSFRKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLF 230
           EA++L  +++  +   + +  KG K   V +    +  +  Y  +           L  F
Sbjct: 213 EAVNLDLKDVNLNMMIIEVTRKGGKHDSVNVAGFAKPYLENYITIRRGRYKAKKTDLAFF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +  +   +    T H LRH+ AT L         +   L
Sbjct: 273 LSEYRGVPNRMDASSIEKMVAKYSQDFKI--RVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH     T +YT++ +    + + ++
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNALDKL 356


>gi|319654362|ref|ZP_08008449.1| hypothetical protein HMPREF1013_05069 [Bacillus sp. 2_A_57_CT2]
 gi|317393861|gb|EFV74612.1| hypothetical protein HMPREF1013_05069 [Bacillus sp. 2_A_57_CT2]
          Length = 388

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 72/322 (22%), Positives = 122/322 (37%), Gaps = 42/322 (13%)

Query: 23  QNLEIERGLSKLTLQSYECDT----RQFLIFLAFYTEEKITIQT---IRQLSYTEIRAFI 75
           ++L  ++  ++ T Q Y  D     +Q L        E   +Q    ++ L+   +R + 
Sbjct: 72  KDLNEKKNRTENTKQEYFRDLLLFYQQLLEQAELLEVEIRDMQEYRLLKNLTARNMRKYQ 131

Query: 76  SKRRT-------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM--RNLKKSNSLP 126
              +        ++    +L R    I+ FLK+L + K         M   N++  +   
Sbjct: 132 EWLKDAPLGKGGKQYSVATLSRKTVVIRGFLKFLYENKYIKVPLHQKMLSSNVRSFDRPN 191

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDD 184
           + ++  + ++LV+    H              ++ +L   GLRI E  +    +   +D 
Sbjct: 192 KEMSSVEVISLVNYFRTH---------PILYGLISVLATTGLRIQELCNAKVSDLAYLDG 242

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGV 242
           +  L + GKG K R V + P+V KAI  +      D  L+     PLF   +GK      
Sbjct: 243 EYWLTVMGKGQKERQVLIHPNVLKAIEGFRKRRRLDFKLDPSDSSPLFTTSKGKAYGYKY 302

Query: 243 FQRYIRQLRRYLGLPL------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
              Y+        L          T H+ RH FA      G DL +I+  LGH  + TTQ
Sbjct: 303 LSNYLITKINKADLDFIKMRKNPITPHSFRHGFALISADQGADLLTIKESLGHSDIKTTQ 362

Query: 297 IYTNVNSKNGGDWMMEIYDQTH 318
           IY           M+   +  H
Sbjct: 363 IYLQ-------RKMLRKNNAAH 377


>gi|84517230|ref|ZP_01004585.1| Phage integrase [Loktanella vestfoldensis SKA53]
 gi|84508905|gb|EAQ05367.1| Phage integrase [Loktanella vestfoldensis SKA53]
          Length = 445

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 95/258 (36%), Gaps = 22/258 (8%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI----TTESN 112
           ++    + +++  ++ +             S+ R L  ++     L  R       T + 
Sbjct: 135 QLGTMHMDEITIEDVLSLQQIGLKAGAAPASINRRLILLRYMFN-LAWRDWKIAGVTGNP 193

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
              +R LK++N   R +  ++   L   V        +  +     I+  L   G R +E
Sbjct: 194 THGVRLLKENNQKERYVRAEELALLYRAV-------KESQNKMLQHIVAFLLLTGTRRNE 246

Query: 173 ALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            L  T +++   +   RI Q K    R VPL       + +           +    +F 
Sbjct: 247 VLHATWEDVDLIKGMWRIPQTKSGFARHVPLNDGAYAVLQQMQ-------GRSQSHYIFG 299

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
             +                R   GLP     H LRH+FA+ L++NG  +  +Q +LGH +
Sbjct: 300 NPKTGKPYVH-VWYAWNSARVKAGLP-DVRLHDLRHTFASLLINNGRSIYEVQKLLGHTQ 357

Query: 292 LSTTQIYTNVNSKNGGDW 309
           + TTQ Y ++  +   D 
Sbjct: 358 IKTTQRYAHLTQETLLDA 375


>gi|319745023|gb|EFV97351.1| phage integrase family site-specific recombinase [Streptococcus
           agalactiae ATCC 13813]
          Length = 356

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 63/353 (17%), Positives = 132/353 (37%), Gaps = 50/353 (14%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYTEEK 57
           + L EI+ + +L+  Q+ L         S  TL  Y  + R+F  +L        +   +
Sbjct: 11  DELKEIMPWYVLEYYQSKLSVP-----YSFTTLYEYLKEYRRFFEWLLDSGVANCHHIAE 65

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQ----------KIGDRSLKRSLSGIKSFLKYLKKRKI 107
           I +  +  L+  ++ AFI   R +           +   ++ R+L+ + S  KYL +   
Sbjct: 66  IELSVLENLTKKDMEAFILYLRERPLLNANTRQNGVSQTTINRTLAALSSLFKYLTEEVE 125

Query: 108 TTESNILNMRNL---------------KKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +      RN+               +  N   +     + +  ++ +     ++    
Sbjct: 126 NADGEPYFYRNVMKKVSTKKKKETLASRAENIKQKLFLGNETIEFLEYIDCEYQNKLSKR 185

Query: 153 DA--------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
                     R+ AI+ LL   G+R+SEA++L  ++I  +   + +  KG K   V +  
Sbjct: 186 ALAFFNKNKERDLAIIALLLASGVRLSEAVNLDLKDINLNVMVIDVTRKGGKRDSVNVAS 245

Query: 205 SVRKAILEYYDLCPFDLNL-NIQLPLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLST 260
             +  +  Y D+        N  + LF          ++    ++ + +  +     +  
Sbjct: 246 FAKPYLANYLDIRKNRYKAENQDIALFLSEYRGVPNRIDASSVEKMVAKYSQ--DFKVRV 303

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           T H LRH+ AT L         +   LGH     T +YT++ +    + + ++
Sbjct: 304 TPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL 356


>gi|295680709|ref|YP_003609283.1| integrase family protein [Burkholderia sp. CCGE1002]
 gi|295440604|gb|ADG19772.1| integrase family protein [Burkholderia sp. CCGE1002]
          Length = 568

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 69/330 (20%), Positives = 128/330 (38%), Gaps = 42/330 (12%)

Query: 16  KERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           KE +  +  + +ERG  LS LT +    D   +  FL   +     +  +R  +  + R 
Sbjct: 246 KEAERLILWVIVERGRALSSLTTE----DAIAYRTFLRHPSPHARWVGPVRPRTSPDWRP 301

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F        +  RS+  +LS + +  ++L +++    +    ++   +  S    L+   
Sbjct: 302 F-----NGSLSARSVAHALSILGALFRWLIEQRYVLANPFAGVKV--REASGANVLDTSH 354

Query: 134 ALTLVDNVLLHT-SHETKWIDARN-------SAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           A T  +  L+ T +   +W    +         +L   Y  GLR SE +  T  +I  D 
Sbjct: 355 AFTEGEWALVRTIADGLEWSYGWSAPAAHRLRFLLDFGYATGLRASELVGATLGHIETDA 414

Query: 186 S---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLN 239
                LR+ GKG K+  V L P    A+  Y       +       + P+   +     +
Sbjct: 415 RGDHWLRVTGKGRKLARVALPPLAWDALAHYLAERELPIAPVRWRPETPVIGSLEADSES 474

Query: 240 P-------GVFQRYIRQLRRYLGLPLS--------TTAHTLRHSFATHLLSNGGDLRSIQ 284
                   GV +R+     + +              + H +RH+ ATH L  G +L +++
Sbjct: 475 TISSVRLWGVLRRFFLVAAKSIEADHPPLAEKLRCASPHWMRHTHATHALGRGAELTTVR 534

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
             L H  +STT IY + +       M +++
Sbjct: 535 DNLRHASVSTTSIYLHSDEVKRARQMSDVF 564


>gi|229120912|ref|ZP_04250154.1| Site-specific recombinase, phage integrase [Bacillus cereus
           95/8201]
 gi|228662572|gb|EEL18170.1| Site-specific recombinase, phage integrase [Bacillus cereus
           95/8201]
          Length = 384

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 58/313 (18%), Positives = 127/313 (40%), Gaps = 25/313 (7%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + ++ + ++++ L   +L         F    AF+  +      +  ++   I  ++
Sbjct: 56  RVFERFIDS-KVKQNLRPKSLN---QFLLMFNSIKAFHETQNAQTFYMTDITTNFISDWV 111

Query: 76  SKRRTQ-----------------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
              + +                  + D ++   +  +K+F+ +  +++I +++       
Sbjct: 112 YWLKNEYVRFDGHAYVPESSQTIGLADETISSRIKRLKTFINWCLRQEIISKNPFNKFEG 171

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            +K N+    L+  +  +L+   +  +     +   R+  +L+LL     RI+EAL L+P
Sbjct: 172 FRKDNTQIDILSVDELKSLL--KVAKSYSNKSFKHFRDYVLLHLLVDGMFRITEALLLSP 229

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRK--AILEYYDLCPFDLNLNIQLPLFRGIRGK 236
            +I      + IQ    K R    +P   K   +L            ++   +F  + G+
Sbjct: 230 SDIDHTNRAVIIQSNNAKSRKTRTVPLSNKTYRLLMQLLEENEAFEDDVDDLIFLSLSGR 289

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L+     R +R+      +      H +RHS ATH LS+ GD+ S++ ILGH  L T  
Sbjct: 290 MLSKNNVLRDMRKYAIEANIKKRFYLHLIRHSAATHYLSSSGDVESLRKILGHADLRTVL 349

Query: 297 IYTNVNSKNGGDW 309
           IY+++      + 
Sbjct: 350 IYSHLADTTVQEK 362


>gi|259910166|ref|YP_002650522.1| Phage integrase [Erwinia pyrifoliae Ep1/96]
 gi|224965788|emb|CAX57320.1| Phage integrase [Erwinia pyrifoliae Ep1/96]
          Length = 235

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 12/201 (5%)

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLVDNVLLHTSHETKWID 153
           ++ + ++L K+ +   +   ++   +    LPR  L+ +Q   +V+   L T        
Sbjct: 2   LQVWFRWLAKQNLILANPAADLELPRLEKHLPRTILSVEQVEDIVNLCDLST-----LQG 56

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILE 212
            R+  +  LL+  G+R  E   L   +    +  L I QGKG + R++P+       +  
Sbjct: 57  MRDRTLPELLWSTGIRRGEVARLDTWSADFSRRILTIVQGKGKQDRVIPVGERALWWLRH 116

Query: 213 YYDLCPFDL-NLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           Y      ++  +     LF  + G   L        +    R  G+    + H  RH+ A
Sbjct: 117 YLHKVRPEIVAVAGCKALFVAMDGVAGLTANGITHAVVPYLRAAGIEKG-SCHLFRHAMA 175

Query: 271 THLLSNGGDLRSIQSILGHFR 291
           T +L NG DLR IQ++  H  
Sbjct: 176 TQMLENGADLRWIQAM--HAS 194


>gi|330448288|ref|ZP_08311936.1| phage integrase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492479|dbj|GAA06433.1| phage integrase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 480

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 60/295 (20%), Positives = 117/295 (39%), Gaps = 30/295 (10%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEIRAFISKR-------RTQKIGDRSLKR 90
                 F  F      E+    T+    +  + +++F++ R       + +     +   
Sbjct: 191 RVMLEAFSCFCIRSCVERFDWITLLYAPVLQSTMQSFLTDRIENTFGDQKKSYAPATADN 250

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP----RALNEKQALTLVDNVLLHTS 146
            L  ++   ++    ++ +   +  ++ +K          R L+ ++   L     L   
Sbjct: 251 LLRMLRGVAQHAWLAELISVETLERIKAIKLPRGSRQSSGRYLSYQE---LDHISALTLE 307

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL--LP 204
            + K    R++AI +L+Y  GLR +E +SL   +I  D+  LR+ GKG+K R VP     
Sbjct: 308 QKNKAKALRDNAIFWLMYEAGLRRAEVVSLNIYDIDMDRCQLRVVGKGNKERYVPFSINS 367

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIR------GKPLNPGVFQRYIRQLRRYLGLPL 258
            +   + ++  +   + +L  +  LF  I        + L         + L +  G   
Sbjct: 368 DLYSTMQQWLAVRQQN-SLMDKPALFCTINRYQALTHQRLTTQTLNDLCKGLNKK-GFNR 425

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             + H  RHS AT+LL  G DL  +   +GH  ++TTQ Y     +   D +  +
Sbjct: 426 VVSPHDFRHSVATNLLRAGFDLLLVSKFMGHSSITTTQRY----DRRTDDDLKGV 476


>gi|325997549|gb|ADZ49757.1| XERCD family protein/integrase/recombinase [Helicobacter pylori
           2017]
          Length = 363

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 73/319 (22%), Positives = 136/319 (42%), Gaps = 25/319 (7%)

Query: 12  FELLKER-QNWLQNLEIE------RGLSKLTLQSYECDTRQFLIFL--AFYTEEKITIQT 62
           FE L E  Q ++ + ++E      R    L + +Y     +F  +   A    E++   +
Sbjct: 42  FECLNEFNQAFISSSQLEKVCKKARNAGLLGINTYALPLLKFHEYFSKARLITERLAFNS 101

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-------ITTESNILN 115
           ++ +    +  F+S   T  +   + K     +     Y+ K+              + N
Sbjct: 102 LKNIDEVMLAEFLS-IYTGGLSLATKKNYRIALLGLFSYIDKQNQDKNEKSYIYNITLKN 160

Query: 116 MRNLKK--SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
           +    +   N LP  LN ++    +D+  +     +  + ARN  ++ ++   G+R +EA
Sbjct: 161 ISGANQSAGNKLPTHLNNEELEKFLDS--IDKIEMSAKVRARNRLLIKIIVFTGMRSNEA 218

Query: 174 LSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           L L  ++   +    T+ I+GKGDK R V L     +++L+ +        +   L LF 
Sbjct: 219 LQLKIKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLTERELYPVKNDL-LFC 277

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +G  L      + + ++  + GL      AH LRHSFAT L     DL  +Q  LGH 
Sbjct: 278 NQKGMALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 337

Query: 291 RLSTTQIYTNVNSKNGGDW 309
            L+T++IYT+ + +   + 
Sbjct: 338 SLNTSRIYTHFDKERLKEA 356


>gi|296163759|ref|ZP_06846464.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295885998|gb|EFG65911.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 321

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 116/296 (39%), Gaps = 17/296 (5%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           + E L E       L   +GL++ T + Y    R FL                + LS  +
Sbjct: 23  AAEFLSEFD---AYLGAVKGLAEGTRRKYGRFVRGFLDVWCSD-----DPPNWQDLSIED 74

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRA 128
           +R ++ +  + K   R     +  +++ L++L    +        +  +++     LP +
Sbjct: 75  LRGYLHRELSSKR-RRPSNSPIVALRAMLRFLTVMGLVPSGLEEALPRIRRWRHATLPAS 133

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L       L+            +   RN+AI+ LL   G+R +E + L   ++      +
Sbjct: 134 LTNDDVERLIKCG----GDAATFQPLRNTAIILLLARTGMRAAEVMHLNLDDVDWADGII 189

Query: 189 RIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
            I+G K  + R +PLL  V +A+L Y        +                +     R +
Sbjct: 190 HIRGAKSRRDRDLPLLRDVGRALLAYIKRERPPSSYRTIFLQALPPARPFTDSSAISRIV 249

Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           R+     G+ P    AH LRH+ AT +L+ G   ++I  +LGH  L +T  Y  ++
Sbjct: 250 RRALNRAGIAPARGAAHLLRHAAATTMLTRGMSFKNIADVLGHQSLQSTATYAKLD 305


>gi|209559468|ref|YP_002285940.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes
           NZ131]
 gi|254799374|sp|B5XLN3|XERS_STRPZ RecName: Full=Tyrosine recombinase xerS
 gi|209540669|gb|ACI61245.1| Tyrosine recombinase xerC [Streptococcus pyogenes NZ131]
          Length = 356

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 65/319 (20%), Positives = 117/319 (36%), Gaps = 45/319 (14%)

Query: 35  TLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRT-------- 80
           TL  Y  + ++F  +L             I + T+  L+  ++ AF+   R         
Sbjct: 37  TLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLEAFVLYLRERPSLNTYS 96

Query: 81  --QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP--------RALN 130
             + +   ++ R+LS + S  KYL +     +      RN+ K  S          RA N
Sbjct: 97  TKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAEN 156

Query: 131 EKQALTLVDNVLLHTSHETKWIDA---------------RNSAILYLLYGCGLRISEALS 175
            KQ L L D  L    +  K  +                R+ AI+ LL   G+R+SEA++
Sbjct: 157 IKQKLFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVN 216

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIR 234
           L  +++  +   + +  KG K   V +    +  +  Y  +         Q L  F    
Sbjct: 217 LDLKDVNLNMMIIEVIRKGGKRDSVNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEY 276

Query: 235 ---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
                 ++    ++ + +      +    T H LRH+ AT L         +   LGH  
Sbjct: 277 RGVPNRMDASSIEKMVGKYSEDFKI--RVTPHKLRHTLATRLYDATKSQVLVSHQLGHSS 334

Query: 292 LSTTQIYTNVNSKNGGDWM 310
              T +YT++ +    + +
Sbjct: 335 TQVTDLYTHIVNDEQKNAL 353


>gi|310818587|ref|YP_003950945.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309391659|gb|ADO69118.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 395

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 102/259 (39%), Gaps = 38/259 (14%)

Query: 72  RAFISKRRTQK----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
           RA + KR+       +  +S+   L+ +   L   +++ +        ++  K       
Sbjct: 146 RAALLKRKGSGAVKLLSLKSINNVLTVLHKLLALAQEQGVLQHVP--RVKLFKTDKPAFD 203

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L+ ++A  +        + E +W       ++ +    GLR+ E + L   ++   +  
Sbjct: 204 FLSFEEAERM------SNAAEPEW-----RTLILVALKTGLRLGELIGLQWADLDLQRGK 252

Query: 188 LRIQG----------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
           L ++           KG + R V L  S  +A+  +  LC           +F    G+P
Sbjct: 253 LNVRRTIWRDVVGLPKGGRERTVDLPTSTVEALKAHRHLCGP--------YVFCQTDGRP 304

Query: 238 LNPGVFQRYIRQLRRYLGLPLS---TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           L  G+ +  + +  R  G+         H LRH++ +HL   G  L+ IQ ++GH  +  
Sbjct: 305 LTAGMTKHPLLRALRRAGVSRPEGSIGWHDLRHTYGSHLAMRGVALKVIQELMGHATIEM 364

Query: 295 TQIYTNVNSKNGGDWMMEI 313
           T  Y +++ +     + E+
Sbjct: 365 TMRYAHLSPEARESAVQEL 383


>gi|295694704|ref|YP_003587942.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295410306|gb|ADG04798.1| integrase family protein [Bacillus tusciae DSM 2912]
          Length = 303

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 59/309 (19%), Positives = 111/309 (35%), Gaps = 27/309 (8%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
              + +L   + E G +  TL+ Y      F         +   ++         + A  
Sbjct: 6   DALEEFLLTKQAE-GRAVRTLKDYRKHVSAFFREHEDAWPDHHALK-------RAVVAHF 57

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +  R   +           +K+F  +  + +   ++   N+   +K++  PR L+     
Sbjct: 58  ADLRE--LSATHYNLRREYLKAFFSWCIREEYLPKNPADNIPK-RKNDGTPRNLDHDTLK 114

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QG 192
            L+         +  +   R+ A++      G R  EAL L P +       + I     
Sbjct: 115 RLL-----ALPRKDTYAGVRDYALMLFQLDTGTRPGEALQLLPDHFNLAALEVIIPSGTA 169

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K    R V + P   KAI     + P D      +P+F    G+      + + + +   
Sbjct: 170 KTRAARTVVVSPQTAKAIRRLLSVRPAD--WTDDVPVFASASGRRFTVHGWDQRLAKYGE 227

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            LG+    TA+ LRHS A   L  GG + ++Q  LGH  L  T+ Y ++   +    + +
Sbjct: 228 RLGV--RLTAYMLRHSSAILFLRGGGHVFALQRQLGHTSLVMTKRYVHLADSD----LHQ 281

Query: 313 IYDQTHPSI 321
            +    P  
Sbjct: 282 QHAVASPVA 290


>gi|302384969|ref|YP_003820791.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302195597|gb|ADL03168.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 281

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 118/306 (38%), Gaps = 29/306 (9%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + + ELL + + +L+     + LS  T+ +YE   R F                 ++++ 
Sbjct: 1   MENEELLNDYKKFLKK----KNLSNNTITAYEGSVRLFFSLN-------------KEITP 43

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             ++ + +   +      ++ + +  +  + ++L +      + I +             
Sbjct: 44  ESLQRYKNYLISH-YRPATVNQRIHAMNHYSRFLTETSGEEYTFIASYHLPSVKVQQKTF 102

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           +     ++  D  LL    + +        I+  L   G R+S  + +  +++      L
Sbjct: 103 M--DSVISNEDYELLKGKLKEEKNYFW-YFIVRFLAATGARVSVLVQIKVEHLNL--GYL 157

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            +  KG K+R +    S+ +  LE+               LF    G+ + P      ++
Sbjct: 158 DLYSKGGKVRRIYFPDSLCQEALEWCHD-----KDKRSGFLFLNKDGRLITPRGINSQLK 212

Query: 249 QLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            L +  G+ P +   H+ RH FA + L+   D+  +  ++GH  + TT+IY   +S+   
Sbjct: 213 HLAKRYGIDPDTVYPHSFRHRFAKNFLACFNDISLLADLMGHESIETTRIYLTRSSQEQQ 272

Query: 308 DWMMEI 313
             + EI
Sbjct: 273 QLLDEI 278


>gi|229070616|ref|ZP_04203854.1| Phage integrase [Bacillus cereus F65185]
 gi|228712521|gb|EEL64458.1| Phage integrase [Bacillus cereus F65185]
          Length = 351

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 119/293 (40%), Gaps = 29/293 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +  S+ T Q Y  D   FL ++        TI TI++LS+ E+  +  +  ++K    +L
Sbjct: 63  KKRSERTKQQYLHDLSHFLRYIKE------TIGTIQELSHNEMEIYFYEL-SKKYASTTL 115

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++  + ++ FLKY+      +++    ++ +  KK   + R L  ++   ++D       
Sbjct: 116 RKKKTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLYPEEVTQILD------- 168

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----DQSTLRIQGKGDKIRIVPL 202
            E K  +       +LL   GLRI E  +    +++     +   LR+ GKG+K R V +
Sbjct: 169 -ELKKSNYFVYTAFFLLTTTGLRIEEIATAKWADLVFHSSLNAYLLRVVGKGNKSREVRI 227

Query: 203 LPSVRKAILEYYDLCPF--DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-- 258
                 A+     L     +L+ +          G           + +    L L    
Sbjct: 228 FEDTLDALCHVRSLRKQTTELDASSTSAFLPKADGSNYRADYLSSLVAKKIEELNLDFLR 287

Query: 259 ----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                 T HT RH  A +L+  G +L+ I+  LGH  + TT+ Y    ++   
Sbjct: 288 YRQDRITPHTCRHFMANYLMEKGVELKKIRDYLGHESIMTTERYLRERTRRQN 340


>gi|229186070|ref|ZP_04313240.1| Tyrosine recombinase xerC [Bacillus cereus BGSC 6E1]
 gi|228597489|gb|EEK55139.1| Tyrosine recombinase xerC [Bacillus cereus BGSC 6E1]
          Length = 130

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 7/134 (5%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYI 247
            GKG K R +P     + A++ Y +     L    +     +F   +G PL     +  +
Sbjct: 1   MGKGKKQRYIPFGSYAQDALITYIENGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVL 60

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +L +   L +  + H LRH+FATH+L  G DLR++Q +LGH  LSTTQIYT+V+ +   
Sbjct: 61  NELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER-- 118

Query: 308 DWMMEIYDQTHPSI 321
             +  +Y + HP  
Sbjct: 119 --LRSVYMKHHPRA 130


>gi|124001375|emb|CAL64013.1| transposase A [Staphylococcus warneri]
          Length = 361

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 69/351 (19%), Positives = 132/351 (37%), Gaps = 69/351 (19%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           FE+++  + +++ L+   G +  T+++Y    + F  F++    E      +    + ++
Sbjct: 23  FEVIEPVKRFIKYLDNT-GKAPNTIKTYCYHLKLFYEFMSQSRIE------LGDFQFEDL 75

Query: 72  RAFISKRRT--------------QKIGDRSLKRSLSGIKSFLKY---------------- 101
             F+   R                K  + S+   L+ + SFL+Y                
Sbjct: 76  ANFVGWLRNPAGHLKVIDIQPKKAKREETSVNSILNAVTSFLEYLNRTENFKAIDMSKEA 135

Query: 102 --LKKRKITTE-----SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
                +          S   N+  L+    L + L   Q   +++               
Sbjct: 136 RGRNFKGFLHHISKGRSYKKNILKLRVKKKLVQVLEHGQVKAIIEAC----------HTK 185

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----------KGDKIRIVPLLP 204
           R+  ++ L+Y  GLRI EALSL  ++I    + + I+           K  K R + +  
Sbjct: 186 RDKLLIMLMYEGGLRIGEALSLRIEDISTWDNQINIRPRDHNENGAYIKLKKERTIDVSK 245

Query: 205 SVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            +     +Y      +   +  I + L     G PL        IR+L +  G+    TA
Sbjct: 246 ELMALYTDYLVHEYGEDLDHDYIFINLKDSYFGHPLKYQSVLDLIRRLGKRTGITF--TA 303

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMME 312
           H LRH+ AT L+ +G D   +Q  LGH  + TT   Y +++ ++  +   +
Sbjct: 304 HILRHTHATELIRSGWDAAYVQKRLGHAHVQTTLDTYVHLSDQDMKNEYKK 354


>gi|269104474|ref|ZP_06157170.1| integrase/recombinase [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268161114|gb|EEZ39611.1| integrase/recombinase [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 468

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 65/289 (22%), Positives = 118/289 (40%), Gaps = 32/289 (11%)

Query: 46  FLIFLAFYTEEKITIQTIRQLSYT-----EIRAFISKRRTQKI------GDRSLKRSLSG 94
              F  FY    I      Q+ Y       ++ F+S+R  + +         +    L  
Sbjct: 183 LEAFSCFYIGSCIERMDWYQVLYAPVLQNLMQQFLSERNDRNLIKTGSYSPATADNLLRM 242

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLP----RALNEKQALTLVDNVLLHTSHETK 150
           ++    +    +  T   +  ++ +K          R L+  +   +    L  T    K
Sbjct: 243 LRGVAHHAWLSESITVETLERIKAIKLPRGSRQSSGRYLSYSELDKISAICLNQT---NK 299

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL--LPSVRK 208
               R++AI +L+Y  GLR +E ++L+  +I  ++ T+ + GKG+K R VP      + +
Sbjct: 300 IKGIRDNAIFWLMYESGLRRAEVVNLSLDDIDINRGTIHVVGKGNKERYVPFSLESDLYR 359

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKP------LNPGVFQRYIRQLRRYLGLPLSTTA 262
           A+ +++D+  + L  NI   LF  +          L         +Q++R  G     + 
Sbjct: 360 ALSKWFDVR-YKLQGNIFNSLFCVVNKHQQVVEKSLTTQSLNDLCKQIQRM-GFERMVSP 417

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           H  RHS AT+LL  G DL  +   +GH  ++TTQ Y     +   D + 
Sbjct: 418 HDFRHSVATNLLRAGHDLLLVSKFMGHSSVTTTQRY----DRRSDDDLK 462


>gi|210616662|ref|ZP_03291167.1| hypothetical protein CLONEX_03388 [Clostridium nexile DSM 1787]
 gi|210149730|gb|EEA80739.1| hypothetical protein CLONEX_03388 [Clostridium nexile DSM 1787]
          Length = 296

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 93/255 (36%), Gaps = 24/255 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEE-------KITIQTIRQLSYTEIRAFISKR------ 78
           S  T  SY  D R F  FL     E        I+   + QL+ ++I  F+         
Sbjct: 42  SSKTKLSYAYDLRVFFNFLKASNPELSSVKIKDISCLVLDQLTPSDIEEFMEYLKYYEDP 101

Query: 79  ---RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
              R Q      + R LS ++    YL KR++        +   K        L++++  
Sbjct: 102 ETNRQQTNNVLGIARKLSSLRGLYNYLYKRQMIKNKVTDLVDMPKLHEKPIVRLDQEEIT 161

Query: 136 TLVDNVLL-------HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
            L+D +         H     K    R+ AI+ LL G G+R+SE + L   +I       
Sbjct: 162 NLLDYMESCGENLTSHQKSYYKKTILRDLAIITLLLGTGIRVSECVGLDISDIDFRNDGF 221

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
            I  KG    I+   P V  A+L Y +     + +      LF  ++ K ++    +  +
Sbjct: 222 HITRKGGDESIIYFGPEVEMALLNYLEEREQIEPHTGHDNALFLSMQKKRISVDAVENLV 281

Query: 248 RQLRRYLGLPLSTTA 262
           ++    +      + 
Sbjct: 282 KKYTSQITAKKINSP 296


>gi|188588813|ref|YP_001921530.1| phage integrase family protein [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188499094|gb|ACD52230.1| phage integrase family protein [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 382

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 59/314 (18%), Positives = 114/314 (36%), Gaps = 38/314 (12%)

Query: 18  RQNWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
             ++L     E   +     T Q+Y+        F+    +  + I  I+QL+Y  ++ F
Sbjct: 64  FSDFLDYWFDEYVMKNCKYNTQQTYKS-------FININLKPNLGIYKIKQLNYAALQEF 116

Query: 75  ISKRRTQKIGDRSLKRSLSGI-KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++K+        +L R  S I  S    +   +    +   N+       +LPR  N  +
Sbjct: 117 LNKQYAHGYSKNTLARLRSIISHSLEMAVSPYQFIKVNPAKNL-------TLPRFDNIAK 169

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG- 192
              ++     +               L + +  G+R+ E   LT   +  ++ T+RI+  
Sbjct: 170 ENIVISIENFNKIIGRFPCGTSFYIPLQIAFNTGMRVGEVCGLTWDCVDFEKKTIRIEKI 229

Query: 193 ---------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                              IR + +  ++   +  + +    +                 
Sbjct: 230 LIFKTKQGYEFSTPKTKGSIRTISIGDTLINILKTHKNWQEENKKNYGSYYNDNNFVCTK 289

Query: 238 LNPGVFQRY-IRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            N        +R L R +   L +    H+LRH+ AT LL  G +++ IQ  LGH + ST
Sbjct: 290 ENGSFVTMTSLRYLSRIINMELQIKFNFHSLRHTHATMLLEGGANIKDIQDRLGHSKFST 349

Query: 295 TQ-IYTNVNSKNGG 307
           T  +Y++V +K   
Sbjct: 350 TMDLYSHVTAKMQN 363


>gi|55821041|ref|YP_139483.1| site-specific tyrosine recombinase XerS [Streptococcus thermophilus
           LMG 18311]
 gi|81560599|sp|Q5M4E9|XERS_STRT2 RecName: Full=Tyrosine recombinase xerS
 gi|55737026|gb|AAV60668.1| integrase/recombinase, tyrosine family [Streptococcus thermophilus
           LMG 18311]
          Length = 356

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 62/324 (19%), Positives = 117/324 (36%), Gaps = 47/324 (14%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEK------ITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  + ++F  +L             I I+T+  L+  ++ +F+   R     
Sbjct: 33  YSFTTLYEYLKEYKRFFNWLIDSGISDADDIASIHIKTLENLTKKDMESFVLYLRERPSL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKR--------------------KITTESNIL 114
                 Q +   ++ R+LS +    KYL +                     K   E+   
Sbjct: 93  NTYSKKQGVSQTTINRTLSALSCLYKYLTEEVEGPDGEPYFYRNVMKKISTKKKKETLAA 152

Query: 115 NMRNLKKSNSL----PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
              N+K+   L     + L+  +    V       S   K  + R+ AI+ LL   G+R+
Sbjct: 153 RAENIKQKLFLGDETMKFLDYVENEYEVKLSNRAKSSFYKNKE-RDLAIIALLLSSGVRL 211

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PL 229
           SEA++L  ++I   +  + +  KG +   V +    R  +  Y  +         Q   L
Sbjct: 212 SEAVNLDLKDINLKRMVIDVTRKGGQRDSVNMASFARPYLENYLSIRNKRYKAEKQDVAL 271

Query: 230 FRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           F          ++    ++ + +  +   +    T H LRH+ AT L         +   
Sbjct: 272 FLTEYRGVPNRIDASSIEKMVAKYSQDFKI--RVTPHKLRHTLATRLYDATKSQVLVSHQ 329

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWM 310
           LGH     T +YT++ +    + +
Sbjct: 330 LGHASTQVTDLYTHIVNDEQKNAL 353


>gi|241889568|ref|ZP_04776866.1| tyrosine recombinase XerC [Gemella haemolysans ATCC 10379]
 gi|241863190|gb|EER67574.1| tyrosine recombinase XerC [Gemella haemolysans ATCC 10379]
          Length = 348

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 65/339 (19%), Positives = 131/339 (38%), Gaps = 41/339 (12%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE------EKITIQTIRQ 65
            E     ++++        LS LTL  Y    + FL +    T       + +++ T+  
Sbjct: 16  PEFPDYIEDFID--TYYDNLSPLTLHRYLETYKNFLNWTIRETISDAELIKDVSLSTLEN 73

Query: 66  LSYTEIRAFISKRRTQKI-----GDRSLKRSLSGIKSFLKY-------LKKRKITTESNI 113
           +S  E+ ++      +++        ++    + ++S  K+        + +     + +
Sbjct: 74  ISKKEMESYFKSLSREQVNGKYRSQTTINNYKAAMRSLYKFLTVTSETEQGKAYFERNVM 133

Query: 114 LNMRNLKKSNSLP---RALNEKQALTLVDNVLLHTSHETK-------------WIDARNS 157
           L +   +   +L    + ++EK  L   D   L                       AR+ 
Sbjct: 134 LKIPINRVKETLSSRSKKISEKIFLDSQDEEFLQYVEFEYEKTLSNHGKSFFLRDKARDL 193

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           AIL L    G+R++E  +L  ++I    S + +  KG+K+  V +  S    + EY    
Sbjct: 194 AILTLFLKSGIRVNELANLKVKDIDFLNSEINVIRKGNKVDTVIITKSALDRLNEYITSL 253

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSN 276
            F LN   +  +F       L+    Q+ + +      +P   + H LRHS+ T L L  
Sbjct: 254 SFKLNR--EDYVFISKNKTGLSIRAIQKLVMKYTDTFNVP--MSPHKLRHSYGTKLALKT 309

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            G++  I + +GH    T+ +Y N + K     + ++ D
Sbjct: 310 NGNIPIIMTQMGHSNSDTSMLYINESKKIIKQNIDKLDD 348


>gi|304383194|ref|ZP_07365667.1| phage integrase family site-specific recombinase [Prevotella
           marshii DSM 16973]
 gi|304335665|gb|EFM01922.1| phage integrase family site-specific recombinase [Prevotella
           marshii DSM 16973]
          Length = 285

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 102/287 (35%), Gaps = 34/287 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            L+  T+ SY      F        ++ +             + F+     +    +++ 
Sbjct: 31  NLAPNTITSYVWTVNYFFEHYKEVNKKNL----------LAYKGFLV----ENFKPQTVN 76

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             L  I  FL+Y K+ K+        ++ +K        L  +  ++  D   L T  + 
Sbjct: 77  LRLQAINKFLEYSKQEKL-------KVKFVKVQQK--NFL--ENVISDADYKFLKTKLKA 125

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              D     I + +   G R+SE L +  +++      L +  KG KIR + +  ++R  
Sbjct: 126 DGFDEWYFTI-WFMAATGARVSELLQIKAEHVQV--GYLDLYSKGGKIRRLYIPKNLRTE 182

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHS 268
             ++               +F    G  +      + ++      G+       H+ RH 
Sbjct: 183 ANKWIKERGL-----SSGYIFLNRFGNRITTRGIAQQLKHFAEKYGINRDVVYPHSFRHR 237

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           FA + L    DL  +  ++GH  + TT+IY    +      + ++ +
Sbjct: 238 FAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDKVVN 284


>gi|86740848|ref|YP_481248.1| phage integrase [Frankia sp. CcI3]
 gi|86742213|ref|YP_482613.1| phage integrase [Frankia sp. CcI3]
 gi|86567710|gb|ABD11519.1| phage integrase [Frankia sp. CcI3]
 gi|86569075|gb|ABD12884.1| phage integrase [Frankia sp. CcI3]
          Length = 411

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 68/361 (18%), Positives = 130/361 (36%), Gaps = 81/361 (22%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E ++  + +L++   + G S  +++SY     ++  FL              ++S  E+R
Sbjct: 38  EPVEPVEVFLRDFVAQ-GRSANSVRSYALALLRWWRFLVAVG------VAWDRVSPAEVR 90

Query: 73  AFISKR-----------------------------RTQKIGDRSLKRSLSGIKSFLKYLK 103
            F+                                     G  +++ S + +++F ++  
Sbjct: 91  DFVLWLGQATKPVAAARVGSRATVGQVNPVTRKRHLGDGYGPATVRHSNAVLRTFYEFWL 150

Query: 104 KRK------------------ITTESNILNMR-------NLKKSNSLPRALNEKQALTLV 138
           +R                       + +   R       N +     PRA+ +++   L 
Sbjct: 151 ERGEGPLVNPVVLARAGRGRAHAHHNPLEAFRPEGRLRYNPRLPKRKPRAMPDERWDALF 210

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG-DKI 197
             +  +          R+ AIL L    G R +E L +   ++      +R+  KG    
Sbjct: 211 AAMGRN----------RDRAILALGVSTGARAAELLGMRGADLDWGGQLVRVVRKGTRAE 260

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-----GKPLNPGVFQRYIRQLRR 252
           + +P  P     +  Y       + L    P++R +       +PLN    +   R+  R
Sbjct: 261 QWLPASPEAFVWLRLYLADVGGGV-LGAGDPVWRTVYRRGGVHEPLNYEALRAVFRRANR 319

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            LG   + T H LRH+ A  ++ +G   LR  Q+ILGH  LSTTQ+Y   + +     + 
Sbjct: 320 RLG--ANWTMHDLRHTCAIRMVRDGRLSLRDAQTILGHAHLSTTQLYLEQDDEEVFARVR 377

Query: 312 E 312
           E
Sbjct: 378 E 378


>gi|265751257|ref|ZP_06087320.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263238153|gb|EEZ23603.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 409

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 65/285 (22%), Positives = 120/285 (42%), Gaps = 25/285 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSLKR 90
           +  T+ +Y    R    F+   TE K++     QL+   IR +       +++   +++ 
Sbjct: 130 APTTMSTYVYTRRTLAEFIK--TEFKVSDLAFGQLNEQFIRDYQDFCLEKKRLAMETVRH 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            LS +K   +   K   + + +  + +  K+  + P+AL+ +    L D  +     E +
Sbjct: 188 YLSILKKICRIAYKEGHSEKYHFCHFKLPKQKETTPKALSRENFEKLRDLEI----PEKR 243

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRI---QGKGDKIRIVPLLPSV 206
                   +       G   ++A+S+T +N+  DD+ +L +   + K D +  V LLP  
Sbjct: 244 RSHVITRDLFLFACYTGTAYADAVSITRENLFWDDEGSLWLKYRRKKTDYLGRVKLLPEA 303

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              I +Y D        + +  LF      P +    +  ++ LR   GL      H  R
Sbjct: 304 LALIEKYRD--------DTRATLFP-----PQDYHTLRANMKSLRLMAGLSQDLVYHMGR 350

Query: 267 HSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           HSFA+ + L  G  + +I  +LGH  + TTQ+Y  V  K   + M
Sbjct: 351 HSFASLVTLEEGVPIETISKMLGHSNIKTTQVYARVTPKRLFEDM 395


>gi|218129372|ref|ZP_03458176.1| hypothetical protein BACEGG_00949 [Bacteroides eggerthii DSM 20697]
 gi|317475338|ref|ZP_07934603.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|217988442|gb|EEC54764.1| hypothetical protein BACEGG_00949 [Bacteroides eggerthii DSM 20697]
 gi|316908505|gb|EFV30194.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 409

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 65/285 (22%), Positives = 120/285 (42%), Gaps = 25/285 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSLKR 90
           +  T+ +Y    R    F+   TE K++     QL+   IR +       +++   +++ 
Sbjct: 130 APTTMSTYVYTRRTLAEFIK--TEFKVSDLAFGQLNEQFIRDYQDFCLEKKRLAMETVRH 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            LS +K   +   K   + + +  + +  K+  + P+AL+ +    L D  +     E +
Sbjct: 188 YLSILKKICRIAYKEGHSEKYHFCHFKLPKQKETTPKALSRENFEKLRDLEI----PEKR 243

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRI---QGKGDKIRIVPLLPSV 206
                   +       G   ++A+S+T +N+  DD+ +L +   + K D +  V LLP  
Sbjct: 244 RSHVITRDLFLFACYTGTAYADAVSITRENLFWDDEGSLWLKYRRKKTDYLGRVKLLPEA 303

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              I +Y D        + +  LF      P +    +  ++ LR   GL      H  R
Sbjct: 304 LALIEKYRD--------DTRATLFP-----PQDYHTLRANMKSLRLMAGLSQDLVYHMGR 350

Query: 267 HSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           HSFA+ + L  G  + +I  +LGH  + TTQ+Y  V  K   + M
Sbjct: 351 HSFASLVTLEEGVPIETISKMLGHSNIKTTQVYARVTPKRLFEDM 395


>gi|322411723|gb|EFY02631.1| site-specific tyrosine recombinase XerS [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 356

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 66/326 (20%), Positives = 121/326 (37%), Gaps = 45/326 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTE------EKITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  + ++F  +L             I + T+  L+  ++ AF+   R     
Sbjct: 33  YSFTTLYEYLKEYKRFFDWLMDADLTDATVIADIDLATLENLTKKDLEAFVLYLRERPSL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-------- 126
                 Q +   ++ R+LS + S  KYL +     +      RN+ K  S          
Sbjct: 93  NTYSTKQGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAS 152

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDA---------------RNSAILYLLYGCGLRIS 171
           RA N KQ L L D  +    +  K  +                R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETMGFLEYVDKDYELKLSNRAKSSFRKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLF 230
           EA++L  +++  +   + +  KG K   V +    +  +  Y  +         Q L  F
Sbjct: 213 EAVNLDLKDVNLNMMVIEVIRKGGKRDSVNVAGFAKPYLEAYLAIRKNRYKAEKQDLAFF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +  +   +    T H LRH+ AT L         +   L
Sbjct: 273 LTEYRGVPNRMDASSIEKMVGKYSQDFKI--RVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH     T +YT++ +    + + ++
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNALDKL 356


>gi|330898871|gb|EGH30290.1| Phage integrase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 215

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 57/198 (28%), Positives = 94/198 (47%), Gaps = 17/198 (8%)

Query: 111 SNILNMRNLKKSN---SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           + +  ++  K  +     P AL + QA  L+D        E+     R+ A+L +L   G
Sbjct: 8   NPVHGVKRPKIESNEGKTP-ALGDHQAKALLD-----APDESTLKGLRDRAMLAVLLYHG 61

Query: 168 LRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           LR  EA  L   +I + +    L+I GKG K+R +PL P     I  Y +     L+ + 
Sbjct: 62  LRREEAAQLQVSDIQERRGIQHLKIHGKGGKVRYLPLHPVAAGRIHLYLERSGHHLD-DK 120

Query: 226 QLPLFRGIRGKP----LNPGVFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDL 280
           ++PLF  +RGKP    ++       +    +  G+ +     H LR + AT+ L +  D+
Sbjct: 121 KVPLFIPLRGKPTDAGVSANGIYTVVEAYAKKAGIEVAGLGVHGLRATAATNALDHEADI 180

Query: 281 RSIQSILGHFRLSTTQIY 298
             +Q+ LGH  +STT+IY
Sbjct: 181 AKVQAWLGHANISTTKIY 198


>gi|209901048|ref|YP_002286830.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae]
 gi|209901058|ref|YP_002286840.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae]
 gi|209901077|ref|YP_002286859.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae]
 gi|294496696|ref|YP_003560389.1| resolvase [Klebsiella pneumoniae]
 gi|167077384|gb|ABZ10915.1| resolvase [Klebsiella pneumoniae]
 gi|167077391|gb|ABZ10921.1| resolvase [Klebsiella pneumoniae]
 gi|167077398|gb|ABZ10927.1| resolvase [Pseudomonas aeruginosa]
 gi|167077405|gb|ABZ10933.1| resolvase [Klebsiella pneumoniae]
 gi|209574205|gb|ACI63092.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae]
 gi|209574215|gb|ACI63101.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae]
 gi|209574234|gb|ACI63120.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae]
 gi|289065758|gb|ADC80914.1| TnpR [Klebsiella pneumoniae]
 gi|293339405|gb|ADE43959.1| resolvase [Klebsiella pneumoniae]
          Length = 571

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 68/323 (21%), Positives = 123/323 (38%), Gaps = 42/323 (13%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +ERG  LS LT      D   +  F+   T  +  +   R     E R F     +  + 
Sbjct: 254 VERGRALSSLT----TDDAIAYRAFVRHPTPRERWVGPPRPRDSVEWRPF-----SGGLS 304

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            RS   +L+ + +  ++L +++    +    ++   + ++L  AL+  +  T  + +LL 
Sbjct: 305 ARSAAYALTVLSALFRWLIEQRYVLANPFAGVKV--RGHALRPALDTARGFTEGEWLLLR 362

Query: 145 T-SHETKWIDARN-------SAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGK 193
             +   +W    +         +L   Y  GLR SE +     N+  D+     L + GK
Sbjct: 363 AIADGLEWSYGWSEPAAQRLRFMLDFGYATGLRASELVGAVLGNVRLDEHGDHWLHLVGK 422

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGK-------PLNPGVF 243
           G K   V L P    A+ +Y       +     N + PL   +          P    V 
Sbjct: 423 GGKPGKVALPPLAYTALDQYLAQRQLPVSRERWNPKTPLVGSLGEDGNAGITGPHLWCVL 482

Query: 244 QRYIRQLRRYLGLPLST--------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           +R+  Q    +              T H +RHS A+H L+ G  L +++  L H  ++TT
Sbjct: 483 RRFFTQAAEAIEADHPVAAEKLRRATPHWMRHSHASHALARGAQLTAVRDNLRHASIATT 542

Query: 296 QIYTNVNSKNGGDWMMEIYDQTH 318
            +Y + +       M + +   H
Sbjct: 543 SMYLHGDELERARQMRQAFGARH 565


>gi|296163766|ref|ZP_06846469.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295885987|gb|EFG65902.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 335

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 64/289 (22%), Positives = 110/289 (38%), Gaps = 14/289 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + + L   RGL   + + Y    R F +      E        + L    +  F+  
Sbjct: 45  LERYRKYLVDVRGLVATSARGYVDVARAFAVTRVVDGE-----LDWKCLRPQHLIQFVLS 99

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLPRALNEKQAL 135
             ++     + K +++ ++S L YL       +     + ++       LP AL  +   
Sbjct: 100 -ASRGRSTGTAKITVTALRSLLIYLHIEGFIAQPLDTAVPSVAGWRLAGLPCALERRDVQ 158

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+                R+ A+L LL   GLR  E   L   +I      L ++GKG 
Sbjct: 159 RLL-----AACDRRTHHGQRDFAMLMLLARLGLRAGEVRMLKLDDIDWRAGELVVRGKGQ 213

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           +I  +PL   V +A+  Y      D      + +      + L+       +       G
Sbjct: 214 RIERLPLPADVGQALASYLRRGRPDTAQGRTVFVRTRAPHRALSSAGVTEAVAAAASRAG 273

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           LP   +AH LRH+ AT ++ +G  L  +  +L H RL TT IY  V+ +
Sbjct: 274 LP-HMSAHRLRHTLATQMVRSGVALPEVAQVLRHRRLMTTSIYAKVDRE 321


>gi|256838892|ref|ZP_05544402.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256739811|gb|EEU53135.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 389

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 66/279 (23%), Positives = 118/279 (42%), Gaps = 25/279 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSLKR 90
           +  T+ +Y    R    F+   TE K++     QL+   IR +       +K+   +++ 
Sbjct: 130 APTTMSTYVYTRRTLAEFIK--TEFKVSDLAFGQLNEQFIRDYQDFCLEKKKLAMETVRH 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            LS +K   +   K   + + +  + +  K+  + P+AL+ +    L D  +     E +
Sbjct: 188 YLSILKKICRIAYKEGHSEKYHFCHFKLPKQKETTPKALSRENFEKLRDLEI----PEKR 243

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRI---QGKGDKIRIVPLLPSV 206
                   +       G   ++A+S+T +N   DD+ +L +   + K D +  V LLP  
Sbjct: 244 RSHVITRDLFLFACYTGTAYADAVSITRENLFQDDEGSLWLKYRRKKTDYLGRVKLLPEA 303

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              I +Y D        + ++ LF      P +    +  ++ LR   GL      H  R
Sbjct: 304 LALIGKYRD--------DTRITLFP-----PQDYHTLRANMKSLRLMAGLSQDLVYHMGR 350

Query: 267 HSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           HSFA+ + L  G  + +I  +LGH  + TTQIY  V  K
Sbjct: 351 HSFASLVTLEEGVPIETISKMLGHSNIKTTQIYARVTPK 389


>gi|290580525|ref|YP_003484917.1| putative integrase/recombinase [Streptococcus mutans NN2025]
 gi|254997424|dbj|BAH88025.1| putative integrase/recombinase [Streptococcus mutans NN2025]
          Length = 356

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 118/326 (36%), Gaps = 45/326 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  + R+F  +L             I ++T+  LS  ++ +FI   R     
Sbjct: 33  YSFTTLYEYLKEYRRFFEWLINSGVSDANKLADIPLETLEHLSKKDMESFILYLRERTLL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                 Q +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 93  NTKNKRQGVSQTTINRTLSALSSLYKYLTEEVENADGEPYFYRNVMKKVSTKKKKETLAA 152

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHET--------KWIDARNSAILYLLYGCGLRIS 171
           +  N   +     + +  ++ V     H+         +    R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGNETMEFLEYVDCEYEHKLSKRALSSFRKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLF 230
           EA++L  +++  +   + +  KG K   V +    +  +  Y  +           L  F
Sbjct: 213 EAVNLDLKDVNLNMMIIEVTRKGGKHDSVNVAGFAKPYLENYITIRRGRYKAEKTDLAFF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +  +   +    T H LRH+ AT L         +   L
Sbjct: 273 LSEYRGVPNRMDASSIEKMVAKYSQDFKI--RVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH     T +YT++ +    + + ++
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNALDKL 356


>gi|94988645|ref|YP_596746.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes
           MGAS9429]
 gi|94542153|gb|ABF32202.1| integrase/recombinase [Streptococcus pyogenes MGAS9429]
          Length = 368

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 66/323 (20%), Positives = 117/323 (36%), Gaps = 45/323 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  + ++F  +L             I + T+  L+  ++ AF+   R     
Sbjct: 45  YSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLEAFVLYLRERPSL 104

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-------- 126
                 + +   ++ R+LS + S  KYL +     +      RN+ K  S          
Sbjct: 105 NTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAS 164

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDA---------------RNSAILYLLYGCGLRIS 171
           RA N KQ L L D  L    +  K  +                R+ AI+ LL   G+R+S
Sbjct: 165 RAENIKQKLFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLS 224

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLF 230
           EA++L  +++  +   + +  KG K   V +    +  +  Y  +         Q L  F
Sbjct: 225 EAVNLDLKDVNLNMMIIEVIRKGGKRDSVNVAGFAKGYLESYLAVRQRRYKAEKQDLAFF 284

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +      +    T H LRH+ AT L         +   L
Sbjct: 285 LTEYRGVPNRMDASSIEKMVGKYSEDFKI--RVTPHKLRHTLATRLYDATKSQVLVSHQL 342

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH     T +YT++ +      +
Sbjct: 343 GHSSTQVTDLYTHIVNDEQKTAL 365


>gi|331005828|ref|ZP_08329184.1| Phage integrase [gamma proteobacterium IMCC1989]
 gi|330420367|gb|EGG94677.1| Phage integrase [gamma proteobacterium IMCC1989]
          Length = 313

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 105/262 (40%), Gaps = 12/262 (4%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102
            R+ +  L F  E +  +     LS+ ++ +  +          S+  +L+G++   K  
Sbjct: 41  LRKAIRLLGFQGEPE--LFAWHDLSFEQVHSIRASMVELGCAVNSINLTLAGLRGVTKAA 98

Query: 103 KKRKITTESNILNMRNLKKSN----SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
                     +L + ++K +      + + ++  +   L+       S       +R+ A
Sbjct: 99  FNLGYIDADQMLRITSVKNTKGDAQQVGKKISRPEIQKLIK---AAKSQSHLLQASRDHA 155

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLC 217
           ++ + +G GLR SE  +L   +       L ++ GKG + R V +   V  AI  +  L 
Sbjct: 156 LIMIGFGAGLRCSEICNLQIGDYKPHFGLLCVRQGKGRRNRQVYVARKVICAIDSWIQLR 215

Query: 218 -PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
              D  L   L     +    L+       + ++++   +    T H +R +F T LL  
Sbjct: 216 GTMDGPLLTSLRKVGKVHATKLSTQGVTYILSKIQQRAKVSK-FTPHDMRRTFITDLLEK 274

Query: 277 GGDLRSIQSILGHFRLSTTQIY 298
             D+ +++ + GH  +STT  Y
Sbjct: 275 DVDINTVRQLAGHSDISTTTRY 296


>gi|291530087|emb|CBK95672.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 418

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 67/330 (20%), Positives = 118/330 (35%), Gaps = 66/330 (20%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IG 84
           E++RGL   T ++Y+            +   +I  +T+  L  T+I+ F +    ++ + 
Sbjct: 81  ELKRGLKNNTFENYKY-------MYETFVRHQIGSKTVSSLKKTDIKRFYNYLTDERQLK 133

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN-------LKKSNSLPRALNEKQALTL 137
             ++    + +   L           +   N+          K      RAL   +   L
Sbjct: 134 PSTIDSIHTVLHQILDMAVDDDYIRNNPSDNVLRELKQAHCFKTEKR--RALTRPE-QEL 190

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK---- 193
           + + L +T     W       I  +L G GLR+ E   L   ++  +   + +       
Sbjct: 191 LLSYLKNTPAAQYW-----YPIFAVLVGTGLRVGELTGLRWCDVDLENGVIDVNHTLVYY 245

Query: 194 --------------------GDKIRIVPLLPSVRKAIL------EYYDLCPFDLNLNIQL 227
                                   R VP+L  V++AI+      E  DL           
Sbjct: 246 DHRTDGSKKGCYFNVNTPKTPAGKRKVPMLSFVKEAIIMEKERQELLDLHCTATIDGYTD 305

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLG------------LPLSTTAHTLRHSFATHLLS 275
            +F    G P + G   + IR++ R               L    + H+LRH+F T +  
Sbjct: 306 FIFINRFGNPQHQGTLNKAIRRIIRDCNDEQFLKNENPEVLLPHFSCHSLRHTFTTRMCE 365

Query: 276 NGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
            G +++ IQ  LGH  +STT  IYT+V  +
Sbjct: 366 AGVNVKVIQDTLGHKDISTTLNIYTDVTKE 395


>gi|322420382|ref|YP_004199605.1| integrase family protein [Geobacter sp. M18]
 gi|320126769|gb|ADW14329.1| integrase family protein [Geobacter sp. M18]
          Length = 334

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 63/282 (22%), Positives = 125/282 (44%), Gaps = 31/282 (10%)

Query: 31  LSKLTLQSY---ECDTRQFLI--FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           LS  T ++Y     D +  L    LA    + I    + ++    I+  + +     +  
Sbjct: 63  LSTATQKTYDERWKDNKDGLKSKRLAERAMDLIGDIPLSKIDDQMIKYLVKQLEESGVKG 122

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            ++ R L+ +K+ L   ++          +++  K+S    R L++++ L +V ++L  T
Sbjct: 123 ATINRYLATMKTLLHDHQQ-------PWEHIKLKKESKGRIRVLSKEEELAVV-SLLRDT 174

Query: 146 SHETKWIDARNSA-ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLL 203
            H++K      +A ++ +L   G R+SE L+L  ++I  D + + I   KGDK R +P+ 
Sbjct: 175 DHKSKRSYYPEAADLVEVLVDTGCRLSEILNLKYEDINWDTNLITIWVNKGDKPRSIPMT 234

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTT 261
             V   +L   +                 ++   ++    Q+    +R+ + L       
Sbjct: 235 KRVGGILLARQEGNW--------------LKPFSIDIDQAQKAWSWVRKRMMLEYDREFV 280

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            H+LRH+ AT LL  G DL +++  LGH  +  T+ Y ++N 
Sbjct: 281 MHSLRHTCATRLLDRGIDLYTVKEWLGHSTIQVTERYAHLNP 322


>gi|291276218|gb|ADD91307.1| transposase B [Bacillus sp. BS-01]
          Length = 639

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 106/279 (37%), Gaps = 23/279 (8%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102
            ++F  F+    E    IQ I QL+  EI  + +    + +   ++   +S +  F   +
Sbjct: 250 LKEFFNFMNKNCE---GIQRIHQLTRNEIEQYFNYINLKGLKPSTVTGRISTLDVFFTTI 306

Query: 103 KKRKITTESNILNM---RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           ++       + + +      K   +LPR ++E        ++L   + +   ++   + +
Sbjct: 307 QRYDWKDTPSKILIFQEDYPKVPKALPRYIDE--------HILEQLNGKLDKLEPYIATM 358

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           + +L  CG+RISE  +L   +++ D+     L+      K   +  +     A++   + 
Sbjct: 359 VMVLQECGMRISELCTLKKGSVITDKEGDCFLKYYQWKMKKEHIIPISKEIAALILVQEQ 418

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP------LSTTAHTLRHSFA 270
              D   +  + +F      PL    F+  + +L     +            H  RH+  
Sbjct: 419 RVADELDDGCVYVFPRKDCSPLKQDTFRVKLNELAYEEKITDSNGEIFRFHDHAFRHTVG 478

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           T +++NG     +Q  LGH     T  Y ++  +     
Sbjct: 479 TRMINNGVPQHIVQKFLGHESPEMTARYAHIFDETLKKE 517


>gi|228925131|ref|ZP_04088241.1| Phage integrase [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228834470|gb|EEM79999.1| Phage integrase [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 360

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 119/293 (40%), Gaps = 29/293 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +  S+ T Q Y  D   FL ++        TI TI++LS+ E+  +  +  ++K    +L
Sbjct: 72  KKRSERTKQQYLHDLSHFLRYIKE------TIGTIQELSHNEMEIYFYEL-SKKYASTTL 124

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++  + ++ FLKY+      +++    ++ +  KK   + R L  ++   ++D       
Sbjct: 125 RKKKTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLYPEEVTQILD------- 177

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----DQSTLRIQGKGDKIRIVPL 202
            E K  +       +LL   GLRI E  +    +++     +   LR+ GKG+KIR V +
Sbjct: 178 -ELKKSNYFVYTAFFLLTTTGLRIEEIATAKWADLVFHSSLNAYLLRVVGKGNKIREVRI 236

Query: 203 LPSVRKAILEYYDLCPF--DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL---- 256
                 AI     L     +L+ +          G           + +      L    
Sbjct: 237 FEDTLDAICHVRRLRKQTTELDASSSSAFLPKADGSNYRADYLSSLVAKKIEETNLAFLR 296

Query: 257 --PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                 T HT RH  A +L+  G +L+ I+  LGH  + TT+ Y    ++   
Sbjct: 297 YRQDRITPHTCRHFMANYLMEKGVELKKIRDYLGHESIMTTERYLRERTRRQN 349


>gi|315222973|ref|ZP_07864852.1| site-specific tyrosine recombinase XerS [Streptococcus anginosus
           F0211]
 gi|315187923|gb|EFU21659.1| site-specific tyrosine recombinase XerS [Streptococcus anginosus
           F0211]
          Length = 362

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 60/323 (18%), Positives = 116/323 (35%), Gaps = 45/323 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  +  +F  ++            +I +  +  ++  ++ AFI   R +   
Sbjct: 39  YSFTTLYEYLKEYNRFFHWILDSGIADGSQIAEIPLLVLENMTKKDMEAFILYLRERPLL 98

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTE-------SNILNMRNLKKSNSLP- 126
                   +   ++ R+LS + S  KYL +             + +  +   KK  +L  
Sbjct: 99  NANTTQNGVSQTTINRTLSALSSLYKYLTEEVENENGEPYFYRNVMKKVSTKKKRETLAA 158

Query: 127 RALNEKQALTLVDN--VLLHTSHETKWIDARNSA-------------ILYLLYGCGLRIS 171
           RA N KQ L L +     L+   +    +  N A             I+ LL   G+R+S
Sbjct: 159 RAENIKQKLFLGEETEQFLNYIDDEYPKNLSNRALSSFDKNKERDLAIIALLLASGVRLS 218

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLF 230
           EA++L  +++      + +  KG K   V +    +  +  Y ++             LF
Sbjct: 219 EAVNLDLKDLNLKMMVIEVTRKGGKRDSVNVAAFAKAYLERYLEVRSKRYKAEKSDTALF 278

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +        +  T H LRH+ AT L         +   L
Sbjct: 279 LTEYRGAPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQL 336

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH     T +YT++ +    + +
Sbjct: 337 GHASTQVTDLYTHIVNDEQKNAL 359


>gi|325856178|ref|ZP_08172003.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483649|gb|EGC86616.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 406

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 68/323 (21%), Positives = 134/323 (41%), Gaps = 39/323 (12%)

Query: 14  LLKERQNWL----QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLS 67
           LL+    +L    + + I+R L    L++Y+      L  L  Y ++K  +  I   QL 
Sbjct: 110 LLESFGEYLAQTKERIGIDRALKTFKLRTYQ------LSLLREYVQKKHKVSDIPLSQLD 163

Query: 68  YTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
              I  F       +K+   S+  +LS +++ ++   K+ +      L   + ++    P
Sbjct: 164 KAFIEGFEYYLTIDRKLKRSSVSSALSTLQTIVRMAVKKGVLDFYPFLGY-SYERPKGEP 222

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAIL--YLLYGC--GLRISEALSLTPQNIM 182
           R++ +++   +++            I+  N  I+    ++ C  GL IS+  +L  +NI+
Sbjct: 223 RSITQEELERIIELK----------IEWENYRIVRDLFVFSCFSGLAISDVRNLREENIV 272

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
            ++  L I+G   K +    +  +  A                 +P             +
Sbjct: 273 LEEGELCIKGSRMKTKTPYRVQVLPPAWAIMERYRGKRAGFVFDVP----------TTDI 322

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               +  ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQIY  V
Sbjct: 323 ILNGMHHIQRNIGMESPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAVV 382

Query: 302 NSKNGGDWMMEIYDQTHPSITQK 324
           +S+     M E+  +   + T K
Sbjct: 383 SSERIHRDMQEVQQRIQDTFTLK 405


>gi|317505162|ref|ZP_07963099.1| integrase [Prevotella salivae DSM 15606]
 gi|315663722|gb|EFV03452.1| integrase [Prevotella salivae DSM 15606]
          Length = 406

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 64/319 (20%), Positives = 132/319 (41%), Gaps = 31/319 (9%)

Query: 14  LLKERQNWL----QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLS 67
           LL+  + +L    + + I+R L    L++Y+      L  L  Y ++K  +  I   QL 
Sbjct: 110 LLESFEEYLTQTKERIGIDRALKTFKLRTYQ------LSLLREYVQKKHKVSDIPLSQLD 163

Query: 68  YTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
              I  F       +++   S+  +LS +++ ++   K+ +      L   + ++    P
Sbjct: 164 KAFIDGFEYYLTIDRRLKHSSISSALSTLQTIVRMALKKGVLDFYPFLGY-SYERPKGEP 222

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R++ +++   ++D  +  T++           +       GL IS+  +L  +NI+ ++ 
Sbjct: 223 RSITKEELERIIDLEIEWTNYRVV------RDLFVFSCFSGLAISDVRNLREENIVLEEG 276

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            L I+G+  K +    +  +  A                 +P             +    
Sbjct: 277 ELCIKGRRMKTKTPYRVQVLPPAWAIMERYRGKRAGFVFDVP----------TNDIILNG 326

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +  ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQIY  V+S+ 
Sbjct: 327 MHFIQRNIGMETPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAAVSSER 386

Query: 306 GGDWMMEIYDQTHPSITQK 324
               M  +  +   + T K
Sbjct: 387 IHRDMQIVQQRIQDTFTLK 405


>gi|256823872|ref|YP_003147834.1| integrase family protein [Cyanothece sp. PCC 8802]
 gi|256592540|gb|ACV03385.1| integrase family protein [Cyanothece sp. PCC 8802]
          Length = 311

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 54/279 (19%), Positives = 119/279 (42%), Gaps = 19/279 (6%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE---IRAFISKRRTQKIGD 85
           R L+  +  +           L     + +++    +L+Y     ++A + +R       
Sbjct: 26  RSLNPRSRVTMRGALNAIASLLTNGECDYMSL-DWAKLTYQHTSAVQAALLERH----AP 80

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESN---ILNMRNLKKSNSLP-RALNEKQALTLVDNV 141
            +  R +  ++  LK  K+  + +  +    +++ ++++S  L  RAL++++   L+   
Sbjct: 81  ATAARMMCALRRVLKEAKRLGLMSGDDYQTAIDLPSIRESRKLRGRALSQEEIRGLMRVC 140

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIV 200
                ++      R++A++ +L G GLR +EA+ L  ++   +  +L+I G KGDK R+V
Sbjct: 141 ----ENDPTTQGIRDAALIAILRGAGLRRAEAVKLQLKDFNQEAGSLQIIGGKGDKDRLV 196

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLGLPLS 259
            L  S    +  +  +        +      G      ++       +++     G+  S
Sbjct: 197 YLPESAISIVNRWLSVRGHSPGALLCPIQKGGRIVIRSMSSQAVLLIVQKRAIAAGVE-S 255

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            + H  R +F + LL  G D+ ++Q + GH    TT  Y
Sbjct: 256 FSPHDFRRTFCSDLLDAGVDIVTVQKLAGHASPVTTAKY 294


>gi|227874538|ref|ZP_03992701.1| integrase family protein [Mobiluncus mulieris ATCC 35243]
 gi|227844747|gb|EEJ54893.1| integrase family protein [Mobiluncus mulieris ATCC 35243]
          Length = 325

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 59/311 (18%), Positives = 106/311 (34%), Gaps = 42/311 (13%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRAFISK 77
           Q++L++       +  T+  Y           A Y   KI  QT IR L+   I  +++ 
Sbjct: 32  QSYLEHAAS--YATPGTIARYRN-------MAASYIFPKIPPQTPIRALTRESIENYVTW 82

Query: 78  RRTQ------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-PRALN 130
            R +       +  R++KR ++ + +   Y  +      +    +R    +    P  L 
Sbjct: 83  LRAKPSRYGTSLKPRTIKRIVAFLSTLFNYQIEIGNLESNPARGIRIPNDAIPTQPVFLT 142

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            +Q   + DN                  ++  LY  GLR  EA +LTP ++     T+ +
Sbjct: 143 PQQVEKIADNC------------GYYGVLVRFLYATGLRFGEATALTPADVNVKTRTITV 190

Query: 191 -QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR----------GIRGKPLN 239
            +      +         K       +      + +  PL                +PL 
Sbjct: 191 SKAWKQGEKSSDFYLGAPKTDTSTRTVLVSKSVIALLKPLLVEDAPFLFHPKTRPDRPLR 250

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIY 298
              F+    +      +      H LRHS  + L+  G  L  IQ  +GH  + TT  IY
Sbjct: 251 NKTFRNCAWKQAVE-NMDPRPRIHDLRHSHVSRLIQAGIPLPVIQKRVGHKDIQTTINIY 309

Query: 299 TNVNSKNGGDW 309
            ++  K+    
Sbjct: 310 GHITPKDARAA 320


>gi|225390518|ref|ZP_03760242.1| hypothetical protein CLOSTASPAR_04273 [Clostridium asparagiforme
           DSM 15981]
 gi|225043423|gb|EEG53669.1| hypothetical protein CLOSTASPAR_04273 [Clostridium asparagiforme
           DSM 15981]
          Length = 269

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 56/303 (18%), Positives = 121/303 (39%), Gaps = 36/303 (11%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + ++ + + + L   + LS  T++SY    RQ+                 R+++   ++ 
Sbjct: 1   MYRDLEQYQEYL-YRKNLSDNTVRSYLYAVRQYFKQH-------------RKITAENLQL 46

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           + +K        +++  S+  + ++ K+            L +    K+  + R +   +
Sbjct: 47  YRAKLIDH-YSPQTVNISIRALNNYFKF------------LGIDLTSKTIKVTRRMQLDR 93

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
            ++  D   L    +   I     AI   +   G+R+SE + +   ++        I  K
Sbjct: 94  VISQADYEYLKRRLKEDQIYNYYYAI-RFMAATGVRVSELVGVLVADVRL--GYKDIHSK 150

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           GDK+R + +  ++R  +L + +    D        LF    G P++    +R ++     
Sbjct: 151 GDKVRRIYIPKTLRTELLSWLEEEKRDHGR-----LFLNNLGDPMSTSAVRRQLKVFSGL 205

Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             + P     H+ RH FA   L   GD+  + ++LGH  L TT+IY   +S      + +
Sbjct: 206 YQIDPERMYPHSFRHYFAKTFLEACGDITLLSNLLGHENLETTRIYLRRSSNEQYQIVNK 265

Query: 313 IYD 315
           + +
Sbjct: 266 VVN 268


>gi|259503340|ref|ZP_05746242.1| phage integrase family site-specific recombinase [Lactobacillus
           antri DSM 16041]
 gi|259168711|gb|EEW53206.1| phage integrase family site-specific recombinase [Lactobacillus
           antri DSM 16041]
          Length = 362

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 68/352 (19%), Positives = 139/352 (39%), Gaps = 42/352 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT------ 54
           ME +    ++  EL K   +++    +    +  T   Y  + R+F  +L          
Sbjct: 9   MEADKYLTLIQSELAK-LPDYVNEYYLGTNHAVTTTYQYLTEIRRFFDWLRLSGLTDAPD 67

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRT------QKIGDRSLKRSLSGIKSFLKYLKKRKIT 108
            + I+ +T+ +L   +I  +I   +       +     S+ RS++ ++S  KYL      
Sbjct: 68  NDSISTKTLEKLRRNDIMLYIDHLKHTQNAQGRLNSPTSINRSINALRSLFKYLTVTADI 127

Query: 109 TE-------SNILNMRNL-------KKSNSLPRALNEKQA----LTLVDNVLLHTSHET- 149
            +       + +L + +L        ++++L   +   Q     +  + N   H   +  
Sbjct: 128 NDGEPYFYRNVMLKIDSLNDTQTLNYRAHTLSSHMYRGQMKFDFINFIQNEYPHKCDKRA 187

Query: 150 ----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
               K    R+ AI+ L+ G G+R+SEA ++   ++  +Q  L +  KG +   VP+ P 
Sbjct: 188 LPAFKVNRERDIAIIALILGTGVRVSEAANVNLGDLNINQGLLDVVRKGGQRDSVPIAPW 247

Query: 206 VRKAILEYYDLCPFDLN-LNIQLPLFRGIRG---KPLNPGVFQRYIRQLRRYLGLPLSTT 261
             + + +Y  +     + L      F  +     + +     +R +++     G P   T
Sbjct: 248 SIQYLRDYLAIRAQRYHALKKDTACFLTVYHGETRRMTANAIERMVKKYSTAFGHP--LT 305

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            H LRH+ A+ +     D   +   LG    S T +YT+V      + + EI
Sbjct: 306 PHKLRHTLASEMYEVTKDQVLVAQQLGQKGTSATDLYTHVGVTQQREALDEI 357


>gi|222153062|ref|YP_002562239.1| site-specific tyrosine recombinase XerS [Streptococcus uberis
           0140J]
 gi|254799375|sp|B9DUD2|XERS_STRU0 RecName: Full=Tyrosine recombinase xerS
 gi|222113875|emb|CAR42035.1| tyrosine recombinase XerC [Streptococcus uberis 0140J]
          Length = 356

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 116/326 (35%), Gaps = 45/326 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  + ++F  +L             I +  +  L+  ++ +FI   R +   
Sbjct: 33  YSFTTLYEYLKEYKRFFDWLIDSGISDAPRIADIKLDVLEHLTKKDMESFILYLRERPSL 92

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                   +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 93  NTYSTKSGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVATKKKKETLAS 152

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWID--------ARNSAILYLLYGCGLRIS 171
           +  N   +     + +  +D V     ++              R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETMEFLDYVDCEYENKLSNRAKSSFQKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLF 230
           EA++L  +++      + +  KG K   V +    +  +  Y ++       + Q    F
Sbjct: 213 EAVNLDLKDVNLKMMVIEVTRKGGKRDSVNVASFAKPYLEHYLEIRQKRYKADKQDQAFF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +  +   +    T H LRH+ AT L         +   L
Sbjct: 273 LTEYRGVPNRIDASSIEKMVGKYSQDFKI--RVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH     T +YT++ +    + + ++
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNALDKL 356


>gi|167851639|ref|ZP_02477147.1| integrase/recombinase [Burkholderia pseudomallei B7210]
          Length = 322

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 113/276 (40%), Gaps = 22/276 (7%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T ++Y      FL + A        + +I  +    + +++ + +T+     ++K+ L
Sbjct: 40  PHTRRAYARAASDFLTWCA-----DAGVSSITAVQPLHVASWV-ELQTRTHAASTVKQRL 93

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSL---PRALNEKQALTLVDNVLLHTSHET 149
           + I+    +L   ++   ++  ++R+   +      P  L+  +A  L+D++ + T    
Sbjct: 94  AAIRHLFDWLVTGQVVPVNSAASVRSPSHTVRTCATP-VLDPAEARQLLDSIDVSTP--- 149

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVR 207
             I  R+ A++ L+     RI  AL++   ++   Q    +R++ KGDK   +P   ++ 
Sbjct: 150 --IGLRDRALIALMVFSFARIGAALAMRVDDVYVQQRRLWIRLREKGDKAHAMPCHHTLE 207

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-----YIRQLRRYLGLPLSTTA 262
            A+  Y D      +    L          L+     +      +R+     G+     +
Sbjct: 208 MALRAYLDGTGIVFDPKGALFRTIARGTGQLSETTLAQANAYVMVRRRAAAAGIATKIGS 267

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           H LR +  T  L NGG L +  +I  H    +TQ Y
Sbjct: 268 HALRATGITTYLRNGGTLENAAAIANHVSTRSTQRY 303


>gi|293570406|ref|ZP_06681462.1| integrase [Enterococcus faecium E980]
 gi|291609501|gb|EFF38767.1| integrase [Enterococcus faecium E980]
          Length = 361

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 61/344 (17%), Positives = 134/344 (38%), Gaps = 51/344 (14%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFIS 76
            ++++Q+   ++  S  T   Y  + + F  +L +       +I +IRQL+  ++  + S
Sbjct: 21  IKDFVQD-REDKDQSPRTTLEYLKNYKLFYEWLLSESIVPDTSITSIRQLTAYDLNLYKS 79

Query: 77  KRRTQ--------------------KIGDRSLKRSLSGIKSFLKY-------LKKRKITT 109
             + +                     +   ++ R+++ +K   KY          +    
Sbjct: 80  HLKRRTKENVKKETTKTKLKDNNNLGLSTSTINRNITALKVLFKYLSKSSNNPLGKPYLD 139

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVD----NVLLHTSHETK------------WID 153
            + +  +  +    +L    N  +    +D    N L + ++E K               
Sbjct: 140 NNPMDQVATITDKTTLAARANAIEKKLFLDKDTQNYLDYIANEYKNTLSKRALIYYQRDV 199

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            R+ AI  L+ G GLR+SE +++   ++  D++ + +  KG+K   V +     + +  Y
Sbjct: 200 ERDLAINALILGSGLRLSEVININLDDLSLDKNNVVVTRKGNKRDAVNIAAFAMEYLANY 259

Query: 214 YDLCPFDLNL-NIQLPLFRGIRG---KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
             +      +   +  LF  I     K ++    +R + +  +  G  +  + H LRH+ 
Sbjct: 260 LAIRKERYKVTENEKALFLAIYQGEAKRISGIAIERMVAKYSK--GFRIQVSPHKLRHTL 317

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           AT L      L      LGH   +TT +YT++++    D +  +
Sbjct: 318 ATRLYQQTNSLVLTAQQLGHSSTNTTTLYTHIDNAATIDALNAL 361


>gi|208434593|ref|YP_002266259.1| integrase-recombinase protein [Helicobacter pylori G27]
 gi|208432522|gb|ACI27393.1| integrase-recombinase protein [Helicobacter pylori G27]
          Length = 363

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 72/319 (22%), Positives = 137/319 (42%), Gaps = 25/319 (7%)

Query: 12  FELLKER-QNWLQNLEIE------RGLSKLTLQSYECDTRQFLIFL--AFYTEEKITIQT 62
           FE L E  Q ++ + ++E      R    L + +Y     +F  +   A    E++   +
Sbjct: 42  FECLNEFNQAFINSSQLEKVCKKARNAGLLGINTYALPLLKFHEYFSKARLITERLAFHS 101

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-------ITTESNILN 115
           ++ +    +  F+S   T  +   + K     +     Y+ K+              + N
Sbjct: 102 LKSIDEVMLAEFLS-VYTGGLSLATKKNYRIALLGLFSYIDKQNQDENEKSYIYNITLKN 160

Query: 116 MRNLKK--SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
           +  + +   N LP  LN ++    ++   +     +  + ARN  ++ ++   G+R +EA
Sbjct: 161 ISGVNQSAGNKLPTHLNNEELEKFLEG--IDKIEMSAKVRARNRLLIKIIVFTGMRSNEA 218

Query: 174 LSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           L L  ++   +    T+ I+GKGDK R V L     +++L+ + +      +   L LF 
Sbjct: 219 LQLKIKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLIERELYPVKNDL-LFC 277

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +G  L      + + ++  + GL      AH LRHSFAT L     DL  +Q  LGH 
Sbjct: 278 NQKGNALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 337

Query: 291 RLSTTQIYTNVNSKNGGDW 309
            L+T++IYT+ + +   + 
Sbjct: 338 SLNTSRIYTHFDKERLKEA 356


>gi|254517350|ref|ZP_05129407.1| phage integrase family protein [gamma proteobacterium NOR5-3]
 gi|219674188|gb|EED30557.1| phage integrase family protein [gamma proteobacterium NOR5-3]
          Length = 391

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 60/288 (20%), Positives = 112/288 (38%), Gaps = 22/288 (7%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           +K T ++++ D              +     I  ++  E++ F ++ R   +   +    
Sbjct: 116 AKQTKRTWKND----ADMHRLRLGPRFGATPINGITRQEVQQFHNELRESGMAPATADHH 171

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L  ++  L       +   +    ++     N + R L + +   L++ +  H +     
Sbjct: 172 LKLLRHALNLAVDWGLLQANPAARVKQFNVFNEVERYLTDPELRRLLEVLKAHENRPVAC 231

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRK 208
                 A+L+LL   G R+ EAL+    +I        +     K  K+R +PL      
Sbjct: 232 ------AVLWLL-ATGARVGEALAAEWPDIDRGNRVWVVHATNSKSKKLRSIPLNDVALG 284

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            + E   L  +         LF G RG PL  G   +    +R   GL  S T H LRHS
Sbjct: 285 VLDELQTLPRYQPGGR----LFIGKRG-PL--GTINKVWYGIRDAAGLE-SFTLHCLRHS 336

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            A+ L+++G  L  +Q +LGH     T  Y++++ ++         D+
Sbjct: 337 HASLLVNSGHSLYEVQRVLGHSDPKVTMRYSHLSQESLQSAANSASDR 384


>gi|227891981|ref|ZP_04009786.1| site-specific tyrosine recombinase XerS [Lactobacillus salivarius
           ATCC 11741]
 gi|227866185|gb|EEJ73606.1| site-specific tyrosine recombinase XerS [Lactobacillus salivarius
           ATCC 11741]
          Length = 365

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 58/335 (17%), Positives = 132/335 (39%), Gaps = 54/335 (16%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLS---YTEIRAFISKRRTQ 81
            S  T+  Y  +  QFLI+L             I  +++ +L+    TE ++++ +R+ Q
Sbjct: 33  YSPNTILEYLKNFHQFLIWLIENHYVNENKTSDIAPESLDKLTVRTATEYKSYLLRRKKQ 92

Query: 82  K----------------IGDRSLKRSLSGIKSFLKY-------LKKRKITTESNILNMRN 118
                            +   +++R+++ +K   K+        +++   T   + ++ N
Sbjct: 93  NKKALDKNGHKEESTETLSKVTIQRNITALKVIFKFLSRSANNSQEKPFLTHDVMQSIDN 152

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR----------------NSAILYL 162
           +    +L    +  +    +D+         K +  +                + AI  L
Sbjct: 153 VADKQTLQARADALEEKLFLDDETDEYLQYIKEVYPQSLSTQAKKFYNRDVERDLAINAL 212

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           + G GLR+SE +++  +++  + + + +  KG+K   V +     + +  Y D+      
Sbjct: 213 MLGSGLRLSEVVNINIEDLDFENNRVAVLRKGNKKDSVRIAAFAMEYLANYRDIRASRYR 272

Query: 223 LN-IQLPLFRGIRG---KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
            +  +   F  I     K +     ++ + +  +  G  +  T H LRH+ AT L     
Sbjct: 273 ADKYEKAFFLAISRGGSKRITGSAIEKMVSKYSK--GFKVRVTPHKLRHTLATRLYKQTN 330

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +L      LGH   +TT +YT++++    D +  +
Sbjct: 331 NLVLTAQQLGHSSTATTTLYTHIDNDETTDALNSL 365


>gi|126665716|ref|ZP_01736697.1| hypothetical protein MELB17_04087 [Marinobacter sp. ELB17]
 gi|126629650|gb|EBA00267.1| hypothetical protein MELB17_04087 [Marinobacter sp. ELB17]
          Length = 361

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 57/295 (19%), Positives = 113/295 (38%), Gaps = 27/295 (9%)

Query: 36  LQSYECDTRQFLIFLAFYTEE------KITIQTIRQLSYTEIRAFISKRR---------T 80
           +  Y  DT   L        +      +I    I+ +S + I  +  + +          
Sbjct: 69  IDRYARDTLPALKDSDRRLAQLQWWRFQIGAVPIKDISASMIAKYRDELKSTPFKTGKTE 128

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           ++  D S  R L+ +   +       +   ++    ++  K++    R L + +   L++
Sbjct: 129 KQRTDASTNRYLAALSPVMAAAADEWEWIADNPCRKVKRGKEAKGRTRFLFDDERKRLLE 188

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR 198
                T      I      I+ L    G R SE   LT +++   + ++     K  + R
Sbjct: 189 ACDKATETPELKI------IVLLGITTGARRSELSGLTWRDVDFKRQSVTFHDTKNGETR 242

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
             PL+     A+ E+  + P + + ++        + KPL+   FQR      +   +  
Sbjct: 243 AAPLVGPALHAMTEWAKVRPLNDSSHVFSGRTEKTKNKPLD---FQRAWMTALKRAEV-K 298

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
               H LRH+ A++L  NG  LR I  ILGH  L+  Q Y+++   +    ++ +
Sbjct: 299 DFRFHDLRHTAASYLAMNGAGLREIAEILGHKTLAMVQRYSHLTQDHTNAVVLRM 353


>gi|257465870|ref|ZP_05630181.1| integrase/recombinase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917027|ref|ZP_07913267.1| tyrosine recombinase xerD-like protein [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313690902|gb|EFS27737.1| tyrosine recombinase xerD-like protein [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 262

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 59/272 (21%), Positives = 118/272 (43%), Gaps = 30/272 (11%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E +  +Q ++ +LE++RGLS+ +L++ + D  QFL ++  Y + ++T+ T++        
Sbjct: 3   EFILWKQKYIHHLELQRGLSQNSLRAIQKDLEQFLNYMEEYQDGELTVLTLK-------- 54

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           ++    + +K    +++R +S IK FL++LK+  I  E   L    ++K         E+
Sbjct: 55  SYFFHLQ-EKHASNTIQRKISSIKVFLRFLKEENIVQEDFSLYFTKVRK---------EE 104

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
             +   +  +          + R+ AI  LLY  G++  E LSLT   I  ++  +    
Sbjct: 105 DTILFFEKDVWEQFRRIFENNLRDKAIFELLYSTGMKPKEFLSLTYLQIQWEKQEIYFFQ 164

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K +  R V      ++A+  Y +                  R    +    +   ++ R 
Sbjct: 165 KKES-RTVFFSHRAKEALWNYCEEKGMKEG-----------RIWDFSEKTLRNIFKKYRE 212

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
            +    + T ++ RH+FA  LL  G     +Q
Sbjct: 213 KISGLENMTIYSFRHTFAITLLRAGMPKSELQ 244


>gi|294614065|ref|ZP_06693993.1| integrase [Enterococcus faecium E1636]
 gi|291593072|gb|EFF24653.1| integrase [Enterococcus faecium E1636]
          Length = 361

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 61/344 (17%), Positives = 134/344 (38%), Gaps = 51/344 (14%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFIS 76
            ++++Q+   ++  S  T   Y  + + F  +L +       +I +IRQL+  ++  + S
Sbjct: 21  IKDFVQD-REDKDQSPRTTLEYLKNYKLFYEWLLSESIVPDTSITSIRQLTAYDLNLYKS 79

Query: 77  KRRTQ--------------------KIGDRSLKRSLSGIKSFLKY-------LKKRKITT 109
             + +                     +   ++ R+++ +K   KY          +    
Sbjct: 80  HLKRRTKENVKKETTKTKLKDNNNLGLSTSTINRNITALKVLFKYLSKSSNNPLGKPYLD 139

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVD----NVLLHTSHETK------------WID 153
            + +  +  +    +L    N  +    +D    N L + ++E K               
Sbjct: 140 NNPMDQVTTITDKTTLAARANAIEKKLFLDEDTQNYLDYIANEYKNTLSKRALIYYHRDV 199

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            R+ AI  L+ G GLR+SE +++   ++  D++ + +  KG+K   V +     + +  Y
Sbjct: 200 ERDLAINALILGSGLRLSEVVNINLDDLSLDKNKVVVTRKGNKRDAVNIAAFAMEYLANY 259

Query: 214 YDLCPFDLNL-NIQLPLFRGIRG---KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
             +      +   +  LF  I     K ++    +R + +  +  G  +  + H LRH+ 
Sbjct: 260 LAIRKERYKVTENEKALFLAIYQGEAKRISGIAIERMVAKYSK--GFRVQVSPHKLRHTL 317

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           AT L      L      LGH   +TT +YT++++    D +  +
Sbjct: 318 ATRLYQQTNSLVLTAQQLGHSSTNTTTLYTHIDNAATIDALNAL 361


>gi|150378362|ref|YP_001314956.1| phage integrase family protein [Sinorhizobium medicae WSM419]
 gi|150032909|gb|ABR65023.1| phage integrase family protein [Sinorhizobium medicae WSM419]
          Length = 412

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 115/294 (39%), Gaps = 14/294 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++   L   RGL   + +      R+FL +   +       Q I  L+  ++ A +  R 
Sbjct: 118 SFSDYLRRVRGLEPKSREGVLLGGRRFLDWCRHHHPG----QDIEALTAKQVLAAVEYRL 173

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLPRALNEKQALTL 137
           +      S   + S I++FL++L       +     +          LP  L        
Sbjct: 174 SLSTTSGSRTAATSHIRTFLRFLYWAGRHHQDLARIVPRTPSWRLAHLPPRLAWNDVRHA 233

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDK 196
           +D +   T      +  R+ A+L LL   G+R  E  ++  ++I      + ++  KG +
Sbjct: 234 IDAIGATTP-----VGIRDRAVLLLLATTGIRNGELRAIRLRDIDWRTGEVFVRRTKGKR 288

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R+VPLL     A+ +Y       ++       F    G         R +R+  R+ G+
Sbjct: 289 DRVVPLLEETGAALADYILRARPRVDSPYLFLSFTPPVGPFKCAAPVSRIVRKRLRHGGV 348

Query: 257 PLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            L     AH LRHS AT L+     +  +  +LGH  ++TT +Y  V +    +
Sbjct: 349 ELGRVAGAHLLRHSLATQLVGQRRPINEVADLLGHRSINTTALYVKVAASQLAE 402


>gi|89098245|ref|ZP_01171130.1| integrase-recombinase [Bacillus sp. NRRL B-14911]
 gi|89087102|gb|EAR66218.1| integrase-recombinase [Bacillus sp. NRRL B-14911]
          Length = 374

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 81/326 (24%), Positives = 134/326 (41%), Gaps = 41/326 (12%)

Query: 18  RQNWL---QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-KITIQTIRQ------LS 67
            Q +L   Q+L  +   S  T++ Y+ +  QF+  L  Y+ E  I I+TIR       L+
Sbjct: 45  IQWFLYRKQHLNHKHDKSSRTIKEYKLEINQFVEQLLKYSLEINIDIETIRSSSLFKSLA 104

Query: 68  YTEIRAFISKRRTQK--------IGDRSLKRSLSGIKSFLKYLKKRKITTESNI---LNM 116
              IR +     T+             +L R  + + +FLK+L + K   E  +   L M
Sbjct: 105 PRHIRRYQEWLATKSPYVQKKGSYAPATLARKTTILNNFLKFLYESKYI-EDPLHQGLLM 163

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
            ++K  +   R L   + + L+++         K       AI+++L   GLR  E  +L
Sbjct: 164 ASIKNEDRPNRDLGPAEVIQLLNHF-------RKEKHPIAFAIIHILTTTGLRNEEFCNL 216

Query: 177 TPQNI----MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLF 230
             ++I    ++D   L++ GKG+K R VPL      +I  +      +     +   PLF
Sbjct: 217 KVKDIQYDSINDGHFLQVLGKGNKSREVPLREKTLDSIHMFRYARGLEEIAAADKDSPLF 276

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLS------TTAHTLRHSFATHLLSNGGDLRSIQ 284
               G   +P    +Y+    +   LP           HTLRHSFA     +  D+  I 
Sbjct: 277 TTNTGSAFSPSYLSQYLTNTIKQSQLPFLDGRSSLIGPHTLRHSFAIISYLSKVDIYQIM 336

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWM 310
             LGH ++ TT IY     +     +
Sbjct: 337 RSLGHEKIETTVIYLQKVMQREQHAI 362


>gi|115377467|ref|ZP_01464669.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|310823313|ref|YP_003955671.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365511|gb|EAU64544.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309396385|gb|ADO73844.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 381

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 58/312 (18%), Positives = 121/312 (38%), Gaps = 39/312 (12%)

Query: 11  SFELLKER-QNWLQ-NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +  +L+E    +++      R     T+ S E   R +L+        +   + +  L++
Sbjct: 70  AVPMLEEFVPRFIEGYARANRQK-PSTIISKESVLRIYLV-------PRFGQRRLDTLTH 121

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            +I+   +  +   +  +++   L+     LK   +  +  +  +  ++ LK        
Sbjct: 122 EDIQRLKADLKD--LSTKTVNNVLTVFNKLLKVAVEWGVLDKLPVT-IKLLKAPKPTMSF 178

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
            + ++   LV+            +D R  A++ L    GLR  E L+L   ++   +  L
Sbjct: 179 YDFEEYERLVEA--------ASKLDWRIQAMVLLGGDAGLRSGEILALEWTDVDFRRGQL 230

Query: 189 RIQG----------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
            I+           KG + R VP+   +   +     L    +             G+P 
Sbjct: 231 HIRQSEWQGHVTVPKGGRDRRVPMTKRLAALLATNRHLKGPRVLYRD--------NGQPA 282

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                 R++ + ++  GLP++   H LRH+F + L   G   ++IQ + GH  LSTTQ Y
Sbjct: 283 TRAAVSRWMAKAQKRAGLPVTRALHVLRHTFCSPLAMRGAPAKAIQELAGHENLSTTQRY 342

Query: 299 TNVNSKNGGDWM 310
            +++       +
Sbjct: 343 MHLSPAAKDAAI 354


>gi|210134881|ref|YP_002301320.1| integrase-recombinase protein [Helicobacter pylori P12]
 gi|210132849|gb|ACJ07840.1| integrase-recombinase protein [Helicobacter pylori P12]
          Length = 356

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 65/286 (22%), Positives = 126/286 (44%), Gaps = 21/286 (7%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y     +F  +      +KI++++++ +    +  F+S   T  +   + K     +
Sbjct: 73  INTYALPLLKFYEYT-----KKISLKSLKSIDEVMLAEFLS-VYTGGLSLATKKNYRIAL 126

Query: 96  KSFLKYLKKRK-------ITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLLHTS 146
                Y+ K+              + N+  + +   N LP  LN ++    ++   +   
Sbjct: 127 LGLFSYIDKQNQDENEKSYIYNITLKNISGVNQSAGNKLPTHLNNEELEKFLEG--IDKI 184

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLP 204
             +  + ARN  ++ ++   G+R +EAL L  ++   +    T+ I+GKGDK R V L  
Sbjct: 185 EMSAKVRARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLKA 244

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AH 263
              +++L+ + +      +   L LF   +G  L      R + ++  + GL      AH
Sbjct: 245 FHIESLLKEWLMERELYPVKNDL-LFCNQKGGALTQAYLYRQVERIINFAGLRREKNGAH 303

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            LRHSFAT L     DL  +Q  LGH  L+T++IYT+ + +   + 
Sbjct: 304 MLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 349


>gi|111020190|ref|YP_703162.1| transposase A [Rhodococcus jostii RHA1]
 gi|110819720|gb|ABG95004.1| possible transposase A [Rhodococcus jostii RHA1]
          Length = 374

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 67/340 (19%), Positives = 117/340 (34%), Gaps = 54/340 (15%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+ + ++ G S  T  +Y  D R    F A      I  +  R     E+  ++ +R 
Sbjct: 30  RFLRYV-LDSGRSPNTALAYGYDLRLAFEFFAECG---IDWREFRPALALELLGWLRRRP 85

Query: 80  TQK----------------IGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMR----N 118
            +                 +   S+ R L+ + SF  + +    +  E+ +   R     
Sbjct: 86  VRGPAQRLGLAPVGSGGRLLAPASVARVLAAVSSFYDWAIVAELVIGENPMRRRRDVALA 145

Query: 119 LKKSNSLP--------RALNEKQALTLVDNVLLH------TSHETKWIDARNSAILYLLY 164
           +      P        + ++ +  + L   +         T+        R+ A++ L+ 
Sbjct: 146 MVAERHRPFTGNASRQQPVSREVRVRLPRRLPRPLRECEVTALLESMRSLRDLAMVLLML 205

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP-----------LLPSVRKAILEY 213
             GLR  E L L   +I   +  + I+ + D  R V            L P    A+  Y
Sbjct: 206 DGGLRPGEVLGLQLGDIAYGRRRVTIRKRNDHPRGVRAKSRQERVVDLLEPRTLDAVNRY 265

Query: 214 YDLCPFDLNLNIQLPLFRG---IRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSF 269
                     +  + L  G    R  PL+     R   +    LG      T H LRH+ 
Sbjct: 266 VLHERPVDAPSPFVFLVGGRGARRCVPLSYDALVRMFARRLDTLGFRTADKTPHALRHTH 325

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           AT +   G    ++Q  LGH    +T+IYT V+     D 
Sbjct: 326 ATAMWEAGMRELALQRRLGHASPESTRIYTRVSDTQVRDE 365


>gi|77734437|emb|CAJ26220.1| integerase-recombinase [Thermotoga neapolitana]
 gi|77734439|emb|CAJ26226.1| integerase-recombinase [Thermotoga neapolitana]
 gi|77734447|emb|CAJ26230.1| integerase-recombinase [Thermotoga sp. SG1]
          Length = 190

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 90/210 (42%), Gaps = 30/210 (14%)

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           K    + +  L  +K++L +   R +   E    N     +   LP+A+   +   +++ 
Sbjct: 9   KNAPATQRNKLVVVKNYLNWRADRGLLNAEERFWNEAEPPRHTVLPKAIELDEVRRIIEA 68

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQGKGDKIRI 199
                       +    AI  +L   G+R+SE ++L+  +I  ++ + +RI+GKG+K RI
Sbjct: 69  CD----------NPLYRAIFKVLANTGMRVSEIVNLSVHDISVNETARIRIKGKGNKERI 118

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           + +   + + ++                    G   K  +    QR +++  R  G+   
Sbjct: 119 INVSKELVEELMN------------------SGFFEKKPSVRSIQRAVKRYARKAGIKKK 160

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
            T H  RHSFA  L+  G  L  IQ++LGH
Sbjct: 161 VTPHIFRHSFAVALIERGVPLNKIQALLGH 190


>gi|53712520|ref|YP_098512.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52215385|dbj|BAD47978.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 419

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 58/304 (19%), Positives = 116/304 (38%), Gaps = 25/304 (8%)

Query: 16  KERQNWLQNLEIE-RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           + +QN+++  ++  +     + +S   + R+    L  +  E +    I      + R F
Sbjct: 125 RSQQNFIEYFDVVSKKRHANSSESIIVNWRRTHELLKIFAGEYLPFSKIDNRLAEDFRMF 184

Query: 75  ISK-----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +       +++  +   +     S  K+ LK        T      ++ +++  S    L
Sbjct: 185 MLSAPCGGKKSGTVSQNTAATYFSIFKAALKQAFIDDYLTVDLSAKIKGIQEQESRREYL 244

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
             ++      N+L  T  E   +  + SA+   L   GLR  +   L  + I  D +  R
Sbjct: 245 TVEEL-----NMLASTPCERDVL--KRSALFSAL--TGLRHCDIQKLRWKEISMDGNQAR 295

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           +     K + V  +P   +A+    +    +  +   LP          +P    + +++
Sbjct: 296 LHFTQQKTKGVEYMPISEQALQLCGERRKPEQLVFEDLP----------DPAWISKPLKK 345

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+    T H  RH+FAT  LS+  D+ ++  +LGH  + TTQIY  V  +     
Sbjct: 346 WVESAGIKKKITYHCFRHTFATLQLSSSTDIYTVSKMLGHTNVKTTQIYAKVVDEKKNKA 405

Query: 310 MMEI 313
              I
Sbjct: 406 AQAI 409


>gi|295841287|dbj|BAJ07052.1| integrase [uncultured bacterium]
          Length = 276

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 64/285 (22%), Positives = 102/285 (35%), Gaps = 61/285 (21%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           +  S  T ++Y    R+F++F      E        Q+   E+ +F++       +   +
Sbjct: 14  KQYSLRTEKTYMEWIRRFILFHNKRHPE--------QMGAPEVESFLTHLAVNGKVSAST 65

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNM-RNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
              +LS I    +      +  E   +++    KK   LP  L   +   L   V     
Sbjct: 66  QNLALSAILFLYR----EVLEIELPWMDIFSRAKKPARLPVVLTRDEVNRLFAAVE---- 117

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS 205
                    +  +L LLYG G+R+ E  SL  ++I  D+  + I+ GKG K R+  L  S
Sbjct: 118 ------SPYHLLMLKLLYGTGMRLMECYSLRIKDIDFDRMEIIIRSGKGGKDRVTVLPVS 171

Query: 206 VRKAI------------------------------------LEYYDLCPFDLNLNIQLPL 229
           +   +                                     E+     F        P+
Sbjct: 172 LSDTMKAQVEKCRMLLQRDRANGVPGVYLPNGLERKYPNAGKEWAWFWVFPAKGLSTDPV 231

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
            + IR    +    QR  +Q  R  G+    T HTLRHSFATHLL
Sbjct: 232 TKIIRRHHQHEKALQRATKQAVRDSGISKPATPHTLRHSFATHLL 276


>gi|221198562|ref|ZP_03571607.1| phage integrase family protein [Burkholderia multivorans CGD2M]
 gi|221207791|ref|ZP_03580798.1| phage integrase family protein [Burkholderia multivorans CGD2]
 gi|221172288|gb|EEE04728.1| phage integrase family protein [Burkholderia multivorans CGD2]
 gi|221181013|gb|EEE13415.1| phage integrase family protein [Burkholderia multivorans CGD2M]
          Length = 575

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 72/337 (21%), Positives = 123/337 (36%), Gaps = 48/337 (14%)

Query: 16  KERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           KE +  +    +ERG  LS LT +    D   +  FL   T  +  I  +R     + R 
Sbjct: 247 KEAERLILWAIVERGRALSSLTTE----DALAYRTFLRRPTPHERWIGPVRPRGAPDWRP 302

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F     +  +  RS   +LS + +  ++L +++    +    ++   +      AL+   
Sbjct: 303 F-----SGALSARSAAYALSVLGAMFRWLIEQRYVLANPFAGVKV--RDTRGASALDTSH 355

Query: 134 ALTLVDNVLLHTSHETKWIDARN--------------SAILYLLYGCGLRISEALSLTPQ 179
           A T  + +L+ T  +       +                IL   Y  GLR SE +  T  
Sbjct: 356 AFTEGEWLLVRTIADGLEFRKTDVPAAAWTPAAAQRLRFILDFGYATGLRASELVGATLG 415

Query: 180 NIMDDQS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGI 233
           +I  D      L++ GKG K   V L P  R A+  Y       +         PL   +
Sbjct: 416 DIDTDAHGDAWLKVVGKGSKAARVALPPLARTALDRYLVARRLPVTPVRWRPDTPLIPRL 475

Query: 234 RGK---PLNPGVFQRYI-RQLRRYLGLP-----------LSTTAHTLRHSFATHLLSNGG 278
                 P+      + + R   +   L               + H +RH+ ATH L+ G 
Sbjct: 476 TEDGAAPITSVRLWKVMQRFFVQTADLIEADNPALAQKLRQASPHWMRHTHATHALARGA 535

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +L +++  L H  +STT IY + +       M   + 
Sbjct: 536 ELTTVRDNLRHASISTTSIYLHGDDVKRARQMASAFA 572


>gi|168213070|ref|ZP_02638695.1| putative phage integrase family protein [Clostridium perfringens
           CPE str. F4969]
 gi|170715383|gb|EDT27565.1| putative phage integrase family protein [Clostridium perfringens
           CPE str. F4969]
          Length = 312

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 62/304 (20%), Positives = 125/304 (41%), Gaps = 24/304 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L + +  R L K TL+ Y    +     +            I+ L+   +  F+ K
Sbjct: 19  VEEYLIDCK-RRNLRKDTLRHYRESYKSITRIIDENIY-------IKDLNINSVGEFVVK 70

Query: 78  RRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            + +  I D++L      +K+++ Y  +++         ++  K          +++   
Sbjct: 71  CKEKFNINDQTLHTYTRDLKTWMYYWMRQEYI---PNFKIKLPKVDKKNIEPYTDEELKK 127

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGD 195
           L+    L T    ++ + RN  ++  +   GLR++  +++  ++I  D   + +   K  
Sbjct: 128 LLKKPDLKT---CRFGEYRNWVLVNFILSTGLRLNSFVNIKVKDIDFDNEVVFVNMTKNR 184

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K  I+PL   + K + EY  +   D        LF    G  L+       +    +  G
Sbjct: 185 KPLIIPLNNIIIKILREYLRIRKPD---KEDDYLFCNDYGIQLSKCTINASLSSYNKKRG 241

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +   T  H  RH+FA   + NGG++ ++Q ILGH  L  T+ Y N+  ++    M    D
Sbjct: 242 INK-TGIHRYRHTFAKKWIMNGGNVVTLQKILGHSNLQITENYINLLVQDLKIEM----D 296

Query: 316 QTHP 319
           + +P
Sbjct: 297 KYNP 300


>gi|260593259|ref|ZP_05858717.1| integrase [Prevotella veroralis F0319]
 gi|260534816|gb|EEX17433.1| integrase [Prevotella veroralis F0319]
          Length = 414

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 50/297 (16%), Positives = 104/297 (35%), Gaps = 20/297 (6%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97
           +Y+       +   F  ++ +T   I  +       +    + + +   ++ R L  +  
Sbjct: 127 TYQNLLYSDKLLTEFVKDKGMTDIVIATIQEDLFEEYRFYLKKRGLATATMNRYLCWLSR 186

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
            +     +++   +   N +  K    + R L +     L+   ++    E         
Sbjct: 187 LMYRAVSQRLIRCNPFENAKYEKTEQKI-RFLQKSDVGKLMALRVIDKEAEQA------R 239

Query: 158 AILYLLYGCGLRISEALSLTPQNIM---DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213
            +       GL I++   L  ++I    D Q  +R  + K     IVPL P     I + 
Sbjct: 240 RMFVFACFTGLAIADMEHLQYRHIQMSADGQKYIRKGRQKTKMEFIVPLHPIAEAIINQC 299

Query: 214 YDLC-----PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
                       +       +F        +  V  + +  + +  G+    + H  RH+
Sbjct: 300 KKERPSMKEMQTVKEKGDDFIF----HCACSRSVMSKNLSIVGKACGIRERLSYHMARHT 355

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           F T  LS G  + SI  ++GH  +S+TQIY  V      + M  +  +     T+++
Sbjct: 356 FGTLSLSAGIPIESIAKMMGHASISSTQIYAQVTDNKISEDMDRLIRKHQTKETKEE 412


>gi|3152920|gb|AAC17173.1| unknown [Streptococcus mutans]
          Length = 356

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 58/326 (17%), Positives = 117/326 (35%), Gaps = 45/326 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  + R+F  +L             I ++T+  LS  ++ +FI   R     
Sbjct: 33  YSFTTLYEYLKEYRRFFEWLIDSGVSNANKLADIPLETLEHLSKKDMESFILYLRERTLL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                 Q +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 93  NTKNKRQGVSQTTINRTLSALSSLYKYLTEEVENADGEPYFYRNVMKKVSTKKKKETLAA 152

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHET--------KWIDARNSAILYLLYGCGLRIS 171
           +  N   +     + +  ++ V      +         +    R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGNETMEFLEYVDCEYEQKLSKRALSSFRKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLF 230
           EA++L  +++  +   + +  KG K   V +    +  +  Y  +           L  F
Sbjct: 213 EAVNLDLKDVNLNMMIIEVTRKGGKHDSVNVAGFAKPYLENYITIRRGRYKAKKTDLAFF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +  +   +    T H LRH+ AT L         +   L
Sbjct: 273 LSEYRGVPNRMDASSIEKMVAKYSQDFKI--RVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH     T +YT++ +    + + ++
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNALDKL 356


>gi|194303106|ref|YP_002014521.1| gp53 [Mycobacterium phage Kostya]
 gi|194153154|gb|ACF34220.1| gp53 [Mycobacterium phage Kostya]
          Length = 279

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 55/284 (19%), Positives = 109/284 (38%), Gaps = 20/284 (7%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L   R  S  T+++Y      +L F             +  L    + A+++   +  + 
Sbjct: 3   LRAAR-KSAETIRAYGGSVEGYLNFCVE--------GELAPLEKASLLAWVNSMAS--LQ 51

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             ++   L+ +K F++++   +      +L +R  K    + + L+++    LV      
Sbjct: 52  PATVHLRLTAVKQFMRWVADEEGVNVDGLLVVRPPKLDQKVVKHLSDRAVQALV-----A 106

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLL 203
           T     + D R+ A++ L    G+R +E L+L  +++      L + +GKG K R V   
Sbjct: 107 TCAGNTFRDRRDKALIVLFTETGIRAAEMLALDVEDVSLVDCQLTVRRGKGAKGRRVKYS 166

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           P     I +Y            + PL+ G+ G  L+    +  +++     G+P     H
Sbjct: 167 PMCAATIDKYLRAR-RRAGHGSEGPLWIGL-GGRLSYTGMKSSLKRRADDAGVP-GFHPH 223

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            LRH+ A   L  GG    + +  G         Y    ++   
Sbjct: 224 RLRHTSAVRWLKAGGSEAGLMAQAGWQSRRQIDRYIKSAAEELA 267


>gi|319641592|ref|ZP_07996279.1| hypothetical protein HMPREF9011_01877 [Bacteroides sp. 3_1_40A]
 gi|317386792|gb|EFV67684.1| hypothetical protein HMPREF9011_01877 [Bacteroides sp. 3_1_40A]
          Length = 386

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 62/317 (19%), Positives = 112/317 (35%), Gaps = 44/317 (13%)

Query: 15  LKERQNWLQNLE---IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            KE   +L+       ER  +  +  ++    R  L +L  Y +EK T + I        
Sbjct: 86  FKEDTPFLEYYRKMVEERHKNPESEGNWGNW-RSCLRYLEIYCDEKTTFKDITPEFINGF 144

Query: 72  RAFI------SKRRT---------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           + F+      + +RT         Q +   S     + +++ +      +I   + +  +
Sbjct: 145 KDFLNNVEKDTHKRTGPRRERDVFQGLSQNSKVSYFNKLRACINQAYDERIIPVNPLRGI 204

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              K +      L  ++   L        +   ++   + + +   L   GLR S+   L
Sbjct: 205 EGFKAAEVKRDYLTLEEVKQL-------AATPCRYPILKRAFLFSCL--TGLRKSDIQKL 255

Query: 177 TPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
           T   +       RI   Q K      + +     K + E           N + P+F G 
Sbjct: 256 TWSEVQKFGDYTRIVFKQKKTGGQEYLDISSQAEKYLGE---------RGNPEDPVFTGF 306

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
                     QR          +  + T H  RH+FA  +L  G D+ ++  +LGH  L+
Sbjct: 307 TYGAWTSLELQR----WSMAANINKNLTFHCGRHTFAVLMLDLGADIYTVSKLLGHKELA 362

Query: 294 TTQIYTNVNSKNGGDWM 310
           TTQIY  V  KN  + +
Sbjct: 363 TTQIYAKVLDKNKQNAV 379


>gi|307637362|gb|ADN79812.1| integrase/recombinase [Helicobacter pylori 908]
 gi|325995955|gb|ADZ51360.1| integrase/recombinase [Helicobacter pylori 2018]
          Length = 363

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 72/319 (22%), Positives = 136/319 (42%), Gaps = 25/319 (7%)

Query: 12  FELLKER-QNWLQNLEIE------RGLSKLTLQSYECDTRQFLIFL--AFYTEEKITIQT 62
           FE L E  Q ++ + ++E      R    L + +Y     +F  +   A    E++   +
Sbjct: 42  FECLNEFNQAFISSSQLEKVCKKARNAGLLGINTYALPLLKFHEYFSKARLITERLAFNS 101

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-------ITTESNILN 115
           ++ +    +  F+S   T  +   + K     +     Y+ K+              + N
Sbjct: 102 LKNIDEVMLAEFLS-IYTGGLSLATKKNYRIALLGLFSYIDKQNQDKNEKSYIYNITLKN 160

Query: 116 MRNLKK--SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
           +    +   N LP  LN ++    +++  +     +  + ARN  ++ ++   G+R +EA
Sbjct: 161 ISGANQSAGNKLPTHLNNEELEKFLES--IDKIEMSAKVRARNRLLIKIIVFTGMRSNEA 218

Query: 174 LSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           L L  ++   +    T+ I+GKGDK R V L     +++L+ +        +   L LF 
Sbjct: 219 LQLKIKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLTERELYPVKNDL-LFC 277

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +G  L      + + ++  + GL      AH LRHSFAT L     DL  +Q  LGH 
Sbjct: 278 NQKGMALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 337

Query: 291 RLSTTQIYTNVNSKNGGDW 309
            L+T++IYT+ + +   + 
Sbjct: 338 SLNTSRIYTHFDKERLKEA 356


>gi|56550653|ref|YP_161719.1| integrase/recombinase xerD [Cupriavidus metallidurans CH34]
 gi|94152600|ref|YP_582002.1| phage integrase [Cupriavidus metallidurans CH34]
 gi|56410359|emb|CAI30241.1| hypothetical Integrase/recombinase xerD [Cupriavidus metallidurans
           CH34]
 gi|93358966|gb|ABF13052.1| tyrosine-based site-specific recombinase BimA [Cupriavidus
           metallidurans CH34]
          Length = 495

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 60/311 (19%), Positives = 110/311 (35%), Gaps = 37/311 (11%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK- 82
            L    G S  TL++Y  + R+ + +   +            L+  ++ A+         
Sbjct: 173 FLRDRTGRSSHTLRAYGAELRRLMRWCGTH-----GFGPFSDLTRQQLLAYRHTLEHGSS 227

Query: 83  --------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNEK 132
                   + + +  R+L+ + S   Y         +    +    ++ S  +P  L   
Sbjct: 228 GTANTTPPLSEATRTRALAVVASLYGYWYATGYLHANPAAGLSAGSRARSGFVPTRLIPS 287

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL------TPQNIMDDQS 186
             L   D  L   S        R  AI  L    G+R++E            +     + 
Sbjct: 288 ALLDACDAWLDANSAGDLLPALRQRAIWALYRYAGVRLAELAWSAETALPRLEAEAPGRW 347

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           TL + GKG K+R +PL       +  Y      P + + +  LP+  G +G+ L      
Sbjct: 348 TLYVCGKGRKVRAIPLPAQCMVVLRAYRRARGLPPEPSAHETLPVIHGSKGEALQQTGLY 407

Query: 245 RYIRQLRR------------YLGLPLSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFR 291
           R I+ +                 L  + + H LRH++A  L+  +   L + Q++LGH  
Sbjct: 408 REIKAIFAVVADGLQAREPAKAMLLRAASPHWLRHAYARTLVVDHQVPLPAAQALLGHAS 467

Query: 292 LSTTQIYTNVN 302
           + TT  Y   +
Sbjct: 468 VQTTAAYAKTD 478


>gi|211927036|dbj|BAG82769.1| site-specific recombinase, phage integrase family [uncultured
           bacterium]
          Length = 345

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 59/294 (20%), Positives = 105/294 (35%), Gaps = 34/294 (11%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  + ++Y      FL +                 S   + A+ +    Q     S+ ++
Sbjct: 37  SAHSKRAYSRALVDFLDWYDENGRPG--------FSKATVNAYRAYLLQQGKSRSSINQA 88

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSN----SLPRALNEKQALTLVDN--VLLHT 145
           LS I+         ++ + +    +  +K            L +++A  L++        
Sbjct: 89  LSAIRKLAAEAADNQLMSPTLAAGVERVKGVKQEGVRAGNWLTKEEAQKLINTPVHRWRQ 148

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRIQGKGDKIRIVPL 202
               +    R+ AIL ++ G GLR SE   L  +         + + + GK  ++R V L
Sbjct: 149 DEIPRTKALRDQAILAVMIGAGLRRSEVAGLQWEQIQQRDGRWAIIDLAGKRGRVRSVGL 208

Query: 203 LPSVRKAILEY-----YDLCPFDLNLNIQLPLFRGIRGKP-------LNPGVFQRYIRQL 250
            P V+ A+  +      +       LN    L   +R K        L+       + + 
Sbjct: 209 PPWVKVALERWSRASGLNSGRVFRALNKDGSLAGRVRTKGGYRTDGNLSAQAIYNVVSEH 268

Query: 251 RRYLGL-----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               G        +  AH LR + A   L  G DLR IQ +LGH  ++TT+ Y 
Sbjct: 269 ATAAGFVDNEGHPTLAAHDLRRTAAALALKGGADLRQIQQMLGHASITTTERYL 322


>gi|196047914|ref|ZP_03115092.1| related, transposase A [Bacillus cereus 03BB108]
 gi|196021170|gb|EDX59899.1| related, transposase A [Bacillus cereus 03BB108]
          Length = 356

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 59/346 (17%), Positives = 130/346 (37%), Gaps = 80/346 (23%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+ ++   G S  T ++Y    + F  +L        T +  + +S  ++  FI   R
Sbjct: 30  KYLKYIDTT-GKSANTQRTYCYSLKHFFTYLDE------TNKDYKYISLEDLVEFIGWLR 82

Query: 80  TQKIGDR--------------SLKRSLSGIKSFLKYLKKRKITTES-------------- 111
           +     +              ++  +++ I +F  YL + +                   
Sbjct: 83  SPYKSPKVTPLQQEKATRTEKTINLTITVIANFYDYLFRNEEIQNDMMEKLMKQVFTGGH 142

Query: 112 ---------------NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
                          +I N+  LK+     + L ++Q   +++             + R+
Sbjct: 143 SRYKSFLHHINKDKPSIRNVLKLKEPRKKLKILTKEQVQQVLNAT----------TNIRD 192

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQ-----------GKGDKIRIVPLLP 204
           + ++ LL+  GLRI E LSL  ++ + D     RI+                 R + +  
Sbjct: 193 TFLIQLLFETGLRIGEVLSLFIEDFIFDHAKGHRIRLVDRGELENGAKLKTGEREIFVSQ 252

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRG----KPLNPGVFQRYIRQLRRYLGLPLST 260
           S+     +Y      +L+++    +F  +RG    KP+     +   ++L++  G+  + 
Sbjct: 253 SLMDLYDDYLYEIMDELDVDTNF-VFIKLRGENAGKPMTYSDVESLFKRLKKKTGI--NL 309

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKN 305
             H  RH+ AT       +++ +Q  LGH ++ TT  +Y + + + 
Sbjct: 310 HPHLFRHTHATIYYQKTKNIKQVQERLGHSQIQTTMNLYLHPSEEE 355


>gi|149926485|ref|ZP_01914746.1| Phage integrase [Limnobacter sp. MED105]
 gi|149824848|gb|EDM84062.1| Phage integrase [Limnobacter sp. MED105]
          Length = 393

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 68/341 (19%), Positives = 116/341 (34%), Gaps = 57/341 (16%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK------------ 77
             SK T  SY  +  + L++      + ++      L     R F+              
Sbjct: 53  QASKSTFDSYRKEAERLLLWSVLQLSKPLSSLVYEDLQL--YRQFLLDPQPADFWVSSPG 110

Query: 78  RR-----------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           RR              +   S +++L  + S   ++ +      + +   +  ++S+S P
Sbjct: 111 RRFGRNDSRWRPFAGPLSASSQRQTLVILNSMFSWMVESGYLVGNPLALGK--RRSSSSP 168

Query: 127 RALNE--KQALTL-VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           + +       L L V   +L           R   +  L Y  GLRISE       +   
Sbjct: 169 KTVTRYLDPILWLEVKAFILELRSTDLLRYHRLRWLFSLFYLGGLRISEVSQGCMGDFYF 228

Query: 184 -------DQSTLRIQGKGDKIRIVPLLPSVRKAILEY--YDLCPFDLNLNIQLPLFRGIR 234
                  D   LR+ GKG+K R +P+       +L Y  Y       ++  Q+PLF   R
Sbjct: 229 RRAPDGNDLWWLRVVGKGNKERQIPISGEFLDELLLYRSYVQVSGLPSVGEQVPLFGSAR 288

Query: 235 GKPLN--PGVFQRYI----------------RQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
              +          +                    R      S +AH LRH+  +H+ ++
Sbjct: 289 NFRIRVGRSSIHGTVTDLFADVAAKLRMQGDMHAVRRASQLESASAHWLRHTAGSHMANS 348

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           G DLR I+  LGH  +STT IY + +           +   
Sbjct: 349 GVDLRVIRDNLGHASISTTSIYLHTDDDQRHADTSTAHRVA 389


>gi|257889173|ref|ZP_05668826.1| phage integrase [Enterococcus faecium 1,141,733]
 gi|293552958|ref|ZP_06673611.1| integrase [Enterococcus faecium E1039]
 gi|293569758|ref|ZP_06680846.1| integrase [Enterococcus faecium E1071]
 gi|257825245|gb|EEV52159.1| phage integrase [Enterococcus faecium 1,141,733]
 gi|291587716|gb|EFF19592.1| integrase [Enterococcus faecium E1071]
 gi|291602888|gb|EFF33087.1| integrase [Enterococcus faecium E1039]
          Length = 361

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 60/344 (17%), Positives = 134/344 (38%), Gaps = 51/344 (14%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFIS 76
            ++++Q+   ++  S  T   Y  + + F  +L +       +I +IR L+  ++  + S
Sbjct: 21  IKDFVQD-REDKDQSPRTTLEYLKNYKLFYEWLLSESIVPDTSITSIRHLTAYDLNLYKS 79

Query: 77  KRRTQ--------------------KIGDRSLKRSLSGIKSFLKY-------LKKRKITT 109
             + +                     +   ++ R+++ +K   KY          +    
Sbjct: 80  HLKRRAKENVKKDTTKAKLEDNNNLGLSTSTINRNITALKVLFKYLSKSSNNPLGKPYLD 139

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVD----NVLLHTSHETK------------WID 153
           ++ +  +  +    +L    N  +    +D    N L + ++E K               
Sbjct: 140 DNPMDQVATITDKTTLAARANAIEKKLFLDEDTQNYLDYIANEYKNTLSKRALIYYHRDV 199

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            R+ AI  L+ G GLR+SE +++   ++  D++ + +  KG+K   V +     + +  Y
Sbjct: 200 ERDLAINALILGSGLRLSEVVNINLDDLSLDKNNVVVTRKGNKRDAVNIAAFAMEYLANY 259

Query: 214 YDLCPFDLNL-NIQLPLFRGIRG---KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
             +      +   +  LF  I     K ++    +R + +  +  G  +  + H LRH+ 
Sbjct: 260 LAIRKERYKVTENEKALFLAIYQGEAKRISGIAIERMVAKYSK--GFRVQVSPHKLRHTL 317

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           AT L      L      LGH   +TT +YT++++    D +  +
Sbjct: 318 ATRLYQQTNSLVLTAQQLGHSSTNTTTLYTHIDNAATIDALNSL 361


>gi|227550064|ref|ZP_03980113.1| tyrosine recombinase [Enterococcus faecium TX1330]
 gi|257885868|ref|ZP_05665521.1| phage integrase [Enterococcus faecium 1,231,501]
 gi|257897435|ref|ZP_05677088.1| phage integrase [Enterococcus faecium Com12]
 gi|227180803|gb|EEI61775.1| tyrosine recombinase [Enterococcus faecium TX1330]
 gi|257821724|gb|EEV48854.1| phage integrase [Enterococcus faecium 1,231,501]
 gi|257834000|gb|EEV60421.1| phage integrase [Enterococcus faecium Com12]
          Length = 364

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 60/344 (17%), Positives = 134/344 (38%), Gaps = 51/344 (14%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFIS 76
            ++++Q+   ++  S  T   Y  + + F  +L +       +I +IR L+  ++  + S
Sbjct: 24  IKDFVQD-REDKDQSPRTTLEYLKNYKLFYEWLLSESIVPDTSITSIRHLTAYDLNLYKS 82

Query: 77  KRRTQ--------------------KIGDRSLKRSLSGIKSFLKY-------LKKRKITT 109
             + +                     +   ++ R+++ +K   KY          +    
Sbjct: 83  HLKRRAKENVKKDTTKAKLEDNNNLGLSTSTINRNITALKVLFKYLSKSSNNPLGKPYLD 142

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVD----NVLLHTSHETK------------WID 153
           ++ +  +  +    +L    N  +    +D    N L + ++E K               
Sbjct: 143 DNPMDQVATITDKTTLAARANAIEKKLFLDEDTQNYLDYIANEYKNTLSKRALIYYHRDV 202

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            R+ AI  L+ G GLR+SE +++   ++  D++ + +  KG+K   V +     + +  Y
Sbjct: 203 ERDLAINALILGSGLRLSEVVNINLDDLSLDKNNVVVTRKGNKRDAVNIAAFAMEYLANY 262

Query: 214 YDLCPFDLNL-NIQLPLFRGIRG---KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
             +      +   +  LF  I     K ++    +R + +  +  G  +  + H LRH+ 
Sbjct: 263 LAIRKERYKVTENEKALFLAIYQGEAKRISGIAIERMVAKYSK--GFRVQVSPHKLRHTL 320

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           AT L      L      LGH   +TT +YT++++    D +  +
Sbjct: 321 ATRLYQQTNSLVLTAQQLGHSSTNTTTLYTHIDNAATIDALNSL 364


>gi|77454861|ref|YP_345729.1| putative transposase [Rhodococcus erythropolis PR4]
 gi|77019861|dbj|BAE46237.1| putative transposase [Rhodococcus erythropolis PR4]
          Length = 611

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 64/340 (18%), Positives = 128/340 (37%), Gaps = 38/340 (11%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E  +  ++   + +L  + I   +S  ++   E   RQF   LA  ++    +  +  + 
Sbjct: 208 EECAPVMVATMRRYLDQIGISLRVS--SVDCIETTLRQFAGHLATTSD----VVCVADID 261

Query: 68  YTEIRAFISKRRTQ-------KIGDRSLKRSLSGIKSFLKY---LKKRKITTESNILNMR 117
            T I A+ +    +        +   ++   +  + +F +         I   + + +  
Sbjct: 262 RTHIEAYKTWLAARPGYRKNTNLSKTTIGMRMGHLSAFYQRIIEWDYPDIPARAPVYSSD 321

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
              K   LPR L++  A   +       +      D      + +L   G+R  E L LT
Sbjct: 322 RPIKDKPLPRFLDDGAAAKFL-------TAARNLPDEFGRLAIEMLSRTGMRKGELLDLT 374

Query: 178 PQN--IMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
             +   +     LRI  GK    R VPL P ++  I  + +  P   +     PL    R
Sbjct: 375 IDSVVQIGSAYWLRIPVGKLHNDRYVPLHPQLKTMIDTWLEHRPDWQDS----PLLFTDR 430

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G+P+      + ++      G+      H LRH+ AT  ++ G  L +I ++LGH  +  
Sbjct: 431 GRPIPGTRIDKAVQSAAAAAGIG-HVHPHQLRHTLATQAINRGMSLEAIAALLGHKTMEM 489

Query: 295 TQIYTNVNSKNGGD-------WMMEIYDQTHPSITQKDKK 327
           T +Y  +  +   D        +  +Y +  P++   + +
Sbjct: 490 TMVYARIADRTVADQYFSVTEKVEALYSKHEPAVLPAEDE 529


>gi|167754410|ref|ZP_02426537.1| hypothetical protein ALIPUT_02704 [Alistipes putredinis DSM 17216]
 gi|167659035|gb|EDS03165.1| hypothetical protein ALIPUT_02704 [Alistipes putredinis DSM 17216]
          Length = 379

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 57/312 (18%), Positives = 104/312 (33%), Gaps = 39/312 (12%)

Query: 21  WLQNLEI--ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +         R L   +  ++            +   E+I    I Q      R ++ K 
Sbjct: 88  FFDYYRAMCARRLGAESTGNWGNWKSCLKHLQKYEPNERIRFSQITQEWVQGFRDYLEKD 147

Query: 79  ------------RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
                       +   +   S     + +++ L    + +I   + +  +   K      
Sbjct: 148 ACAWSCDERDRIKDHPLSRNSRVSYFNKLRACLNQAYEDRIIPINPMRGVEGFKAEEGTR 207

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             L  ++   L          E ++   + + +   L   GLR S+ + LT  ++     
Sbjct: 208 MYLTIEEVQRL-------AQTECEYPAIKRAFLFSCL--TGLRRSDVIRLTWGDVHQQGE 258

Query: 187 TLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
             RI   Q K      + + P   + + E                +F  I     +P   
Sbjct: 259 FTRIIFKQKKTSGQEYLDIPPQAAELMGE---------RGKDAEHIFPNIH----SPSCT 305

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              I++     G+    T H  RH+FA  +L  G D+ ++  +LGH  LSTTQIY  V  
Sbjct: 306 NETIKRWVLRAGIHKDITFHCGRHTFAVMMLDLGTDIYTVSKLLGHRELSTTQIYAKVLD 365

Query: 304 KNGGDWMMEIYD 315
           KN    + +I D
Sbjct: 366 KNKQAAVAKIPD 377


>gi|15645299|ref|NP_207469.1| integrase/recombinase (xerC) [Helicobacter pylori 26695]
 gi|2313795|gb|AAD07734.1| integrase/recombinase (xerC) [Helicobacter pylori 26695]
          Length = 362

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 64/288 (22%), Positives = 125/288 (43%), Gaps = 18/288 (6%)

Query: 36  LQSYECDTRQFLIFL--AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
           + +Y     +F  +   A    E++   +++ +    +  F+S   T  +   + K    
Sbjct: 72  INTYALPLLKFHEYFSKARLITERLAFNSLKNIDEVMLAEFLS-VYTGGLSLATKKNYRI 130

Query: 94  GIKSFLKYLKKRK-------ITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLLH 144
            +     Y+ K+              + N+  + +   N LP  LN ++    +++  + 
Sbjct: 131 ALLGLFSYIDKQNQDENEKSYIYNITLKNISGVNQSAGNKLPTHLNNEELEKFLES--ID 188

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPL 202
               +  + ARN  ++ ++   G+R +EAL L  ++   +    T+ I+GKGDK R V L
Sbjct: 189 KIEMSAKVRARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVML 248

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT- 261
                +++L+ + +      +   L LF   +G  L      + + ++  + GL      
Sbjct: 249 KAFHIESLLKEWLIERELYPVKNDL-LFCNQKGSALTQAYLYKQVERIINFAGLRREKNG 307

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           AH LRHSFAT L     DL  +Q  LGH  L+T++IYT+ + +   + 
Sbjct: 308 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 355


>gi|332653263|ref|ZP_08419008.1| phage integrase [Ruminococcaceae bacterium D16]
 gi|332518409|gb|EGJ48012.1| phage integrase [Ruminococcaceae bacterium D16]
          Length = 527

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 54/313 (17%), Positives = 108/313 (34%), Gaps = 52/313 (16%)

Query: 37  QSYECDTR---------QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK----- 82
           + Y+ D +         Q+  FL  +    +    + QL+  E + F    +        
Sbjct: 78  EWYQNDAKPRLRPTTQLQYEGFLQHHLIPGLGEIPLNQLTQGEFQQFFRHMKENGRKVQV 137

Query: 83  ------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                 + DRS++   +  +  L    + K+   +  +  +         + L  ++   
Sbjct: 138 ERYGPGMADRSVRSCHAVCQMALDKAVEEKLIHANPAVGCKLPPLKGKEMKILTLEEIQR 197

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI------ 190
            +        +E          +  L    G+R  E L+L   ++      L I      
Sbjct: 198 FLIRAKAEGMYE----------LFLLELTTGMRRGELLALRWDDLDFVTGKLHIDKQVYP 247

Query: 191 ---------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
                           R + L P++ + + EY      DL         R    +P++P 
Sbjct: 248 VGGKLVISEPKTKAANRTIILPPAMVELLAEYKKGVFSDLMFPS-----RTKPEQPIDPC 302

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTN 300
             ++ ++ + +  G       H LRH+FAT  L NG D++++ +I+GH    TT   YT+
Sbjct: 303 YVRKRLQVILKRAGCNK-VRFHDLRHTFATMSLENGMDIKTLSTIIGHVSAETTLNTYTH 361

Query: 301 VNSKNGGDWMMEI 313
           +         + I
Sbjct: 362 ITDDMRRKAALNI 374


>gi|260170442|ref|ZP_05756854.1| transposase [Bacteroides sp. D2]
 gi|315918796|ref|ZP_07915036.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313692671|gb|EFS29506.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 409

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 61/287 (21%), Positives = 114/287 (39%), Gaps = 25/287 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKR 90
           S  T+ +Y    R+   F++      +      QL+   IR F       + +G  +++ 
Sbjct: 130 SHRTIPNYLYTRRRLGEFVSKNY--NVKDLAFSQLNEQFIREFQDYLILERNLGVETVRH 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L+ +K   +   K   +     +N   LK+  + PR L+ ++   + D        E +
Sbjct: 188 YLAILKKICRIAFKEGHSDRHYFVNYPLLKQKVNPPRTLSREEFEKIRDLQF----EEHR 243

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRI---QGKGDKIRIVPLLPSV 206
           W       +       G    + + +T  N+  DD   L +   +GK  K+  V LLP  
Sbjct: 244 WSHITTRDMFLFACYTGTAYVDVIFITNDNLSKDDAGDLWLKYQRGKNGKLCRVKLLPEA 303

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            + I +Y            +  LF       +     +  ++ +R+ +G+    T H  R
Sbjct: 304 IELIEKY--------KNPSRETLFP-----KMEYNALKWNLQSIRQLIGMTGPLTYHMGR 350

Query: 267 HSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           HSF++ + L  G  + ++  +LGH  + TTQIY  V  K   + M +
Sbjct: 351 HSFSSLITLEGGVPIETVSKMLGHSDIKTTQIYARVTPKKLFEDMDK 397


>gi|229492422|ref|ZP_04386226.1| site-specific recombinase, phage integrase family protein
           [Rhodococcus erythropolis SK121]
 gi|229320651|gb|EEN86468.1| site-specific recombinase, phage integrase family protein
           [Rhodococcus erythropolis SK121]
          Length = 611

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 64/340 (18%), Positives = 128/340 (37%), Gaps = 38/340 (11%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E  +  ++   + +L  + I   +S  ++   E   RQF   LA  ++    +  +  + 
Sbjct: 208 EECAPVMVATMRRYLDQIGISLRVS--SVDCIETTLRQFAGHLATTSD----VVCVADID 261

Query: 68  YTEIRAFISKRRTQ-------KIGDRSLKRSLSGIKSFLKY---LKKRKITTESNILNMR 117
            T I A+ +    +        +   ++   +  + +F +         I   + + +  
Sbjct: 262 RTHIEAYKTWLAARPGYRKNTNLSKTTIGMRMGHLSAFYQRIIEWDYPDIPARAPVYSSD 321

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
              K   LPR L++  A   +       +      D      + +L   G+R  E L LT
Sbjct: 322 RPIKDKPLPRFLDDGAAAKFL-------TAARNLPDEFGRLAIEMLSRTGMRKGELLDLT 374

Query: 178 PQN--IMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
             +   +     LRI  GK    R VPL P ++  I  + +  P   +     PL    R
Sbjct: 375 IDSVVQIGSAYWLRIPVGKLHNDRYVPLHPQLKTMIDTWLEHRPDWQDS----PLLFTDR 430

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G+P+      + ++      G+      H LRH+ AT  ++ G  L +I ++LGH  +  
Sbjct: 431 GRPIPGTRIDKAVQSAAAAAGIG-HVHPHQLRHTLATQAINRGMSLEAIAALLGHKTMEM 489

Query: 295 TQIYTNVNSKNGGD-------WMMEIYDQTHPSITQKDKK 327
           T +Y  +  +   D        +  +Y +  P++   + +
Sbjct: 490 TMVYARIADRTVADQYFSVTEKVEALYSKHEPAVLPAEDE 529


>gi|225420398|ref|ZP_03762701.1| hypothetical protein CLOSTASPAR_06743 [Clostridium asparagiforme
           DSM 15981]
 gi|225040961|gb|EEG51207.1| hypothetical protein CLOSTASPAR_06743 [Clostridium asparagiforme
           DSM 15981]
          Length = 288

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 57/321 (17%), Positives = 115/321 (35%), Gaps = 42/321 (13%)

Query: 1   MEGNNLPE---IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK 57
           M  +N P    +    L      +L+ +   + LS  T+ SY    + F        +  
Sbjct: 3   MSSSNPPPASILPQGNLEALLGTFLRYMTA-KNLSGNTILSYVYGVKTFFSRYPELDQNN 61

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           +++  +          ++ +R       +++   +  +  FLK               + 
Sbjct: 62  VSLYKV----------YLMERYR----PQTVNMRIRALNCFLKSQDIHDY-------KIP 100

Query: 118 NLKKSNS--LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +++      +   +++     L  N L      T         I+  +   G+R+SE ++
Sbjct: 101 SVRLQQKSFIDHVISQADYEYL-KNRLWEDEQYTF------YFIVRFIAATGVRVSELVA 153

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           L   ++      L    KG+K R + +  S++K  L++              PLF    G
Sbjct: 154 LVLPDVQVGYRDLY--SKGNKTRRIYIPSSLQKMCLDWL-----AAEGRRDGPLFISRLG 206

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           +P+     ++ ++       L       H+ RH FA + + NGGD+  +  +LGH  + T
Sbjct: 207 RPMTVSGIRKQLKTFAIRYHLDPEVMYPHSFRHRFAKNFIENGGDIAFLSDLLGHDSIET 266

Query: 295 TQIYTNVNSKNGGDWMMEIYD 315
           T IY    S         + D
Sbjct: 267 THIYLRRTSTEQAILFNRVVD 287


>gi|224368839|ref|YP_002603000.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2]
 gi|223691555|gb|ACN14838.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2]
          Length = 384

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 105/274 (38%), Gaps = 32/274 (11%)

Query: 49  FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK------IGDRSLKRSLSGIKSFLKYL 102
               + +       +  +S  +I  F+   +  K          ++K  +  +       
Sbjct: 106 HYNHHLKPVFADNPLDTISPFDIEKFMVTMKKGKSKRGKPYAAATIKHQVVLLTRLYSVA 165

Query: 103 KKRKITT-ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
           ++  + + ++    ++  K +N +   L + +  +L+D +        KW +  ++  + 
Sbjct: 166 EQWGLYSGDNPCKKVKKPKLNNQVTEFLTDDELNSLLDVL-------EKWHNKMSAGFIL 218

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAI----LEYYDL 216
                GLR  E   LT +N+   + ++ ++  KG   + +PL     + +     +Y   
Sbjct: 219 FCLHTGLRRGELFKLTWENVDLTRQSMVLKDPKGKLDQTLPLSDKAVEVLNSLPKDYKTQ 278

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
             F      Q   F+G                +++   GLP     H LRH FA+ L+S 
Sbjct: 279 WIFYGKDGKQRTDFKGP-------------WDRIKVAAGLPKDFRLHGLRHHFASALVSA 325

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           G DL ++Q +L H   + TQ Y ++  K   D +
Sbjct: 326 GVDLYTVQKLLCHKDAAMTQRYAHLADKTLRDAV 359


>gi|171321805|ref|ZP_02910710.1| integrase family protein [Burkholderia ambifaria MEX-5]
 gi|171092906|gb|EDT38154.1| integrase family protein [Burkholderia ambifaria MEX-5]
          Length = 578

 Score =  122 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 71/339 (20%), Positives = 123/339 (36%), Gaps = 51/339 (15%)

Query: 16  KERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           KE +  +    +ERG  LS LT +    D   +  F+   T  +  +  +R     + R 
Sbjct: 247 KEAERLILWAIVERGRALSSLTTE----DAVAYRAFIRRPTPHERWVGPVRPRGAPDWRP 302

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F     +  +  RS   +LS + +  ++L +++    +    ++   +      AL+   
Sbjct: 303 F-----SGGLSARSAAYTLSVLGALFRWLIEQRYLLANPFAGVKV--RDTRGANALDTSH 355

Query: 134 ALTLVDNVLLHTSHE-----------------TKWIDARNSAILYLLYGCGLRISEALSL 176
           A T  + +L+ T  +                 T     R   IL   Y  GLR SE +  
Sbjct: 356 AFTEGEWLLVRTIADGLEFRKDKPSGAPASGWTPAAAQRLRFILDFGYATGLRASELVGA 415

Query: 177 TPQNIMDDQS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLF 230
           T  +I  D      L++ GKG K   V L P  R A+  Y       +         PL 
Sbjct: 416 TLGDIDTDAHGDAWLKVIGKGSKAARVALPPLARTALDRYLVARRLPVTPVRWRPDTPLI 475

Query: 231 RGIRGK---PLNPGVFQRYI-RQLRRYLGLP-----------LSTTAHTLRHSFATHLLS 275
             +       +      + + R   +   L               + H +RH+ ATH L+
Sbjct: 476 PSLAEDGAAAITSVRLWKVMQRFFAQTAALVDADNPALAQKLRQASPHWMRHTHATHALA 535

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            G +L +++  L H  +STT IY + +       M   +
Sbjct: 536 RGAELTTVRDNLRHASISTTSIYLHGDDVKRARQMSSAF 574


>gi|317497960|ref|ZP_07956267.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894759|gb|EFV16934.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 361

 Score =  122 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 61/337 (18%), Positives = 136/337 (40%), Gaps = 53/337 (15%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L+  + +R  +  TL +Y  D + F  FL+ Y           ++S   I  +     
Sbjct: 29  DYLKY-QDQRDRAINTLIAYGNDLKAFWEFLSDYGY------AYDEVSPKMIGEYKEYLM 81

Query: 80  TQK-----------IGDRSLKRSLSGIKSFLKYLKKRKITTESNIL--NMRNL------- 119
           ++               +++ R LS +  F +Y    +   ++ +L   +          
Sbjct: 82  SEDDNIIAINKEGARTAKTINRMLSTLHGFYQYKADMQEI-DNPLLMHEVNRPFNAFKGI 140

Query: 120 --------KKSNSLPRALNEKQALTLV--DNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
                   K   S+ +       + LV  D + L  S   K    R+  +  +LY  G R
Sbjct: 141 LEHARSDNKTKQSIFKVKESNYKINLVSDDEMELFLSRLDKR---RDILLYKMLYLTGAR 197

Query: 170 ISEALSLTPQ-----NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
           I E L L  +     ++       +      K R + +  S+ + + ++       ++ +
Sbjct: 198 IQEVLDLEIESVPVPDMSQPVGCFQQIKSKGKTRDLYVPMSLIQELDDFIFEERNLIDTD 257

Query: 225 IQLPLFRGIRGKPL----NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
               +F   + + L            ++++++ +G+  +   H LRH+F ++L+ +G D+
Sbjct: 258 -HSYIFVSEQARQLGKQLTYSAAYDKLKKVQKEVGIDFN--FHDLRHTFCSNLVQSGMDV 314

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
             ++ I+GH  LSTTQ YT++++    D + + ++Q+
Sbjct: 315 SVVRMIMGHEHLSTTQKYTHLSNPYIEDSLSKYWNQS 351


>gi|254512553|ref|ZP_05124619.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11]
 gi|221532552|gb|EEE35547.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11]
          Length = 158

 Score =  122 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 53/143 (37%), Positives = 74/143 (51%), Gaps = 8/143 (5%)

Query: 168 LRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           +R SE  +LT  +I  D+  + + QGKG K R V L P +   + +Y+           +
Sbjct: 1   MRASEVCNLTTGDIDSDRMLIHVVQGKGRKDRKVMLSPDLLDLLRDYWCEA------RPE 54

Query: 227 LPLFRGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
             LF G  +  P++P    R     +R  G+    T HTLRHSFATHLL  G D+R IQ 
Sbjct: 55  GWLFPGKPKINPISPRQLNRAFTSAKRMAGINKPATLHTLRHSFATHLLEAGTDVRVIQV 114

Query: 286 ILGHFRLSTTQIYTNVNSKNGGD 308
           +LGH +L+ T  YT V +K   D
Sbjct: 115 LLGHAKLTITAQYTKVATKMIRD 137


>gi|210621315|ref|ZP_03292585.1| hypothetical protein CLOHIR_00528 [Clostridium hiranonis DSM 13275]
 gi|210154825|gb|EEA85831.1| hypothetical protein CLOHIR_00528 [Clostridium hiranonis DSM 13275]
          Length = 320

 Score =  122 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 59/315 (18%), Positives = 118/315 (37%), Gaps = 36/315 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-------KITIQTIRQLSYTEI 71
           +++   L+    +S  +  +Y  D   F  +L    E         IT++   +L   +I
Sbjct: 2   KDYFIYLKG--SVSVSSRLAYLEDILFFCHYLVETAEHTSAKITHDITLEEFSELKARDI 59

Query: 72  RAFISKRRTQKIG------------DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
             F+ +  ++               +R+L R  S + +  K+L + +   E+       +
Sbjct: 60  NLFLGEYCSRYYKEIGNTTMVFENNNRALARKKSSLSTLFKFLYRNEQLKENITDGFNPI 119

Query: 120 KKSNSLP---RALNEKQALTLVDNVLLHTSHETKWIDAR------NSAILYLLYGCGLRI 170
           K     P   + L   +   ++D V        K           + AIL L    GLR+
Sbjct: 120 KLPKPQPDAIKRLEIDEVAVMLDAVETGEGLTEKEKVYWKKTKLRDKAILALFVTYGLRL 179

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL---CPFDLNLNIQL 227
           +E   L   +    +    I  K  K  ++P+  +    +L+Y +       D+    + 
Sbjct: 180 NELRELNISSFNFSRGEFTIFRKRGKEVLMPINKTCEHVVLDYINHERPHSEDIPEEHRD 239

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
            LF  ++ K +        +++              + H LR + AT L+ NG  +  +Q
Sbjct: 240 ALFLSLQKKRMTERAITSLVKKYTSISMCTTRDKGYSPHKLRATAATSLIQNGFTIYDVQ 299

Query: 285 SILGHFRLSTTQIYT 299
           ++L H  ++TTQ+Y 
Sbjct: 300 NLLDHDNVTTTQLYA 314


>gi|146283670|ref|YP_001173823.1| integrase/recombinase XerC, putative [Pseudomonas stutzeri A1501]
 gi|145571875|gb|ABP80981.1| integrase/recombinase XerC, putative [Pseudomonas stutzeri A1501]
          Length = 339

 Score =  122 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 58/314 (18%), Positives = 117/314 (37%), Gaps = 32/314 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q WL+ L    G +  TL +Y      +L+       +          ++ ++  +I +
Sbjct: 17  VQAWLE-LLGNLGRAPATLDAYGRALAHYLLHCEGSGLKP------ESATFEQVTLYIRE 69

Query: 78  R---RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS---------- 124
                   + + +L + L+ I+ +  +L  + +   + +   ++ + +            
Sbjct: 70  LLPGAKSAVANSTLHQRLTAIRLWYDHLVFQGLCEHNPVPRGQHGRLAQVPGHGGFVRGL 129

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LPR +      T  D    H          R+  +L L Y   LR +E ++L  +++   
Sbjct: 130 LPRLIKLPDIPT--DEQWRHFLSIAARSSIRDRLMLSLAYFGALRRAELVALRIEDLDVA 187

Query: 185 QSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG----IRGKP 237
              + ++    KG + R+V   P +   ++E+         +     LFR      RG P
Sbjct: 188 HRLISVRAETTKGKRSRVVCYSPDIAPVLIEHLHALRGAGWMRGS--LFRSASDRNRGSP 245

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+   + + +    +   L    + HT RH   THL   G  L  + +  GH    TT I
Sbjct: 246 LSRWAWSKTVEGWAKEAKLS-HLSTHTFRHLRLTHLARAGWKLHELTTYAGHRDPKTTLI 304

Query: 298 YTNVNSKNGGDWMM 311
           Y +++  +    M 
Sbjct: 305 YLHLSGADLTAKMA 318


>gi|298528848|ref|ZP_07016251.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298529857|ref|ZP_07017259.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509231|gb|EFI33135.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510284|gb|EFI34187.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 394

 Score =  122 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 61/313 (19%), Positives = 126/313 (40%), Gaps = 18/313 (5%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           EG    ++   +L +  + +LQ     R +  + +            +L     E     
Sbjct: 91  EGRGRSKLQRAQLPRLYEEYLQFYTQTRQVGHVQIYRVRGTLSALNDYLQNQGME----- 145

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLK 120
            ++ L    + AF+++ R +K    +     SG++ FL+Y   +R+I  +     ++   
Sbjct: 146 -LKDLDVLHMDAFLAE-RNRKYAPETRIHERSGLRGFLRYLYLERQILKKDLSALIQGPP 203

Query: 121 K--SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
               +  PR L  +Q  TL  ++      + +    R+ A+++L Y  GLR  E   +T 
Sbjct: 204 VYAQSRPPRFLTLEQIKTLFQSI-----DKDRPGGLRSYAMIHLAYSLGLRPGEICRVTL 258

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-P 237
            +I+     + +  + +       LP      L  Y      ++   +  L        P
Sbjct: 259 DDILFRDKLIYLPDRKNSSPAKLPLPQGALRALAAYLAWNRPMDPGHRFLLCNTRTPYGP 318

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L P    + I    R  G+    +A+ LRH++A +LL     +  I+ +LGH  + T++ 
Sbjct: 319 LTPLTVSQNISACFRRAGI--KGSAYWLRHTYAQNLLQAEASIFEIKEMLGHDIIKTSKR 376

Query: 298 YTNVNSKNGGDWM 310
           Y +V+++   + +
Sbjct: 377 YLHVHTRLMREVL 389


>gi|218203858|ref|YP_002364713.1| integrase family protein [Cyanothece sp. PCC 8801]
 gi|218169645|gb|ACK68381.1| integrase family protein [Cyanothece sp. PCC 8801]
          Length = 311

 Score =  122 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 56/279 (20%), Positives = 120/279 (43%), Gaps = 19/279 (6%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE---IRAFISKRRTQKIGD 85
           R L+  +  +           L     + +T+    +L+Y     ++A + +R       
Sbjct: 26  RSLNPRSRVTMRGALNAIASLLTNGECDYMTL-DWAKLTYQHTSAVQAALLERH----AP 80

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESN---ILNMRNLKKSNSLP-RALNEKQALTLVDNV 141
            +  R +  ++  LK  K+  + +  +    +++ ++++S  L  RAL++ +   L+   
Sbjct: 81  ATAARMMCALRRVLKEAKRLGLMSGDDYQTAIDLPSIRESRKLRGRALSQDEIRGLMAVC 140

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIV 200
                ++      R++A++ +L G GLR +EA+ L  ++   +  +L+I G KGDK R+V
Sbjct: 141 ----ENDPTTQGIRDAALIAILRGAGLRRAEAVKLQLKDFTQEAGSLQIIGGKGDKDRLV 196

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLGLPLS 259
            L  S    +  + ++  F     +      G      ++       +++     G+  S
Sbjct: 197 YLPESAISIVNRWLEVRGFTPGALLCPIQKGGRIVIRSMSSQSVLLIVQKRAIAAGVE-S 255

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            + H  R +F + LL  G D+ ++Q + GH    TT  Y
Sbjct: 256 FSPHDFRRTFCSDLLDAGVDIVTVQKLAGHASPVTTAKY 294


>gi|260590922|ref|ZP_05856380.1| integrase [Prevotella veroralis F0319]
 gi|260536787|gb|EEX19404.1| integrase [Prevotella veroralis F0319]
          Length = 434

 Score =  122 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 105/282 (37%), Gaps = 23/282 (8%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           R    F+     + I I  I +  + E R F+ KR    +   ++   L  +   +    
Sbjct: 136 RNLREFVEDKGVQDIPIGAITEDLFEEYRFFLKKR---GLKGTTINNYLCWLSRLMFRAV 192

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
            ++I   +   + +  K+   + R L + +   L    +  +  E          +    
Sbjct: 193 SQRIIRYNPFEHAKYEKEEKKI-RFLQKSEVAKLATMKMNDSEAELA------RLMFVFS 245

Query: 164 YGCGLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY------ 214
              GL I++   L  ++I    D +  +R + +  K   +  L  + +AI+ Y       
Sbjct: 246 CLTGLAIADMEHLLYKHIQTAADGRKYIRKERQKTKGEFIVPLHPIAEAIINYCRNEQEG 305

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           +     +       +F        +  V  + +  + +  G+    + H  RH+F T  L
Sbjct: 306 NKAHQAIKEKGDSLVFPRDC----SRSVMGKNLCIVGKACGIKERLSFHMARHTFGTMSL 361

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           S G  + SI  ++GH  +S+TQIY  V  K   + M  +  +
Sbjct: 362 SAGIPIESIAKMMGHASISSTQIYAQVTDKKISEDMDRLIAK 403


>gi|196048003|ref|ZP_03115181.1| integrase-recombinase [Bacillus cereus 03BB108]
 gi|196021259|gb|EDX59988.1| integrase-recombinase [Bacillus cereus 03BB108]
          Length = 380

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 75/333 (22%), Positives = 127/333 (38%), Gaps = 34/333 (10%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-KITIQTIRQ------ 65
           +++    ++  N++  +     T + Y  +   F   L     + +I I+ I++      
Sbjct: 55  DMVYHFIHYSTNIQENKHRKPKTRKQYLREILDFCKVLTSNAADFEIPIEEIQKHNSFIK 114

Query: 66  -LSYTEIRAFISK-------RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
            L    IR F          R  Q     +L R L+ I SFL +L K +       ++++
Sbjct: 115 ALKPWNIRKFNDWIKSVPKGRNNQPYSVSTLARKLATINSFLIHLYKTEYIQSPLHVHLK 174

Query: 118 N--LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
              ++  +   R L  ++  +L+D          K  +     I+  L   GLRI E  +
Sbjct: 175 KATVRVEDRPNRDLYFEEVQSLLDYF-------KKQNNLFGYMIILFLVTTGLRIEEIAN 227

Query: 176 LTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFR 231
               ++   +++  L++ GK  K+R V +   + + + EY      D   N     PL  
Sbjct: 228 AKIGDLFKAENKIWLKVIGKRGKLREVYISQQLFECLYEYRKRKGLDTQFNRLDTNPLLV 287

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLRHSFATHLLSNGGDLRSIQS 285
               K  NP      I Q+    GLP         T HT RH FA     N  +L  IQ 
Sbjct: 288 SNHSKKFNPNYLSNKITQMIFDTGLPFVFEKENPITPHTFRHGFAIIAAENNVELLRIQQ 347

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
            LGH    TT+IY   + K   +  +   D  +
Sbjct: 348 TLGHESPMTTKIYLEKSMKRKHNAALSFADSFN 380


>gi|58577494|emb|CAG29647.1| transposase A [Staphylococcus lentus]
          Length = 361

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 70/351 (19%), Positives = 133/351 (37%), Gaps = 69/351 (19%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           FE+++  + +++ L+   G +  T+++Y    + F  F++    E      +  L + ++
Sbjct: 23  FEVIEPVKRFIKYLDNT-GKAPNTIKTYCYHLKLFYEFMSQSRIE------LGDLQFEDL 75

Query: 72  RAFISKRRT--------------QKIGDRSLKRSLSGIKSFLKY---------------- 101
             F+   R                K  + S+   L+ + SFL+Y                
Sbjct: 76  ANFVGWLRNPAGHLKVIDIQPKKAKREETSVNSILNAVTSFLEYLNRTENFKAIDMSKEA 135

Query: 102 --LKKRKITTE-----SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
                +          S   N+  L+    L + L   Q   +++               
Sbjct: 136 RGRNFKGFLHHISKGRSYKKNILKLRVKKKLVQVLEHGQVKAIIEAC----------HTK 185

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----------KGDKIRIVPLLP 204
           R+  ++ L+Y  GLRI EALSL  ++I    + + I+           K  K R + +  
Sbjct: 186 RDKLLIMLMYEGGLRIGEALSLRIEDISTWDNQINIRPRDHNENGAYIKLKKERTIDVSK 245

Query: 205 SVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            +     +Y      +   +  I + L     G PL        IR+L +  G+    TA
Sbjct: 246 ELMALYTDYLVHEYGEDLDHDYIFINLKDSYFGHPLKYQSVLDLIRRLGKRTGITF--TA 303

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMME 312
           H LRH+ AT L+ +G D   +Q  LGH  + TT   Y +++ ++  +   +
Sbjct: 304 HILRHTHATELIRSGWDGAYVQKRLGHAHVQTTLDTYVHLSDQDMKNEYKK 354


>gi|297566000|ref|YP_003684972.1| integrase family protein [Meiothermus silvanus DSM 9946]
 gi|296850449|gb|ADH63464.1| integrase family protein [Meiothermus silvanus DSM 9946]
          Length = 385

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 61/324 (18%), Positives = 121/324 (37%), Gaps = 35/324 (10%)

Query: 25  LEIERGL---SKLTLQSYECDTRQFLIFLAFYT-EEKITIQTIRQLSYTEIRAFISKRRT 80
           L +ER        T + Y  +    L  L      + +  + ++++    IR  +    +
Sbjct: 70  LWLERKAKEVRPRTAELYRLELSYALPSLQDPEAPDALGSRPLQEVKPAHIREVLDGL-S 128

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSLP--RALNEKQALT 136
           ++   R++K     +    +     ++   + +  + ++  +  +     RAL   +   
Sbjct: 129 KRYSIRTVKMVRQRLWQVFRDALDMELIYRNPVDPVRIKTPRGQSKAKVGRALEPHEIAA 188

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+  +  H    T       +  L L+  CGLR  EAL L  Q++     TL +      
Sbjct: 189 LLSALDQHKDPRT-------ALALRLMLACGLRRGEALGLQWQDLDLGAGTLTVTRAWTD 241

Query: 197 I---------------RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRG-KPLN 239
                           R VP+  +  + + +Y         +   +  +F G    KPLN
Sbjct: 242 DGKRGVLTLPKTHTSGRTVPIPHATLERLQQYRAWYAERLGDPRPEAWVFPGNDPSKPLN 301

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IY 298
           P      ++++   LG+      H LRHS+ +H+L+NG  L  +   +GH   + T  +Y
Sbjct: 302 PHAPNWALKRITERLGIG-PLRVHDLRHSYGSHMLANGAPLELVSERMGHANANITLGVY 360

Query: 299 TNVNSKNGGDWMMEIYDQTHPSIT 322
            +V       W+++  D   P   
Sbjct: 361 RHVLEHERKGWIIDPEDLLGPRAK 384


>gi|251782381|ref|YP_002996683.1| site-specific tyrosine recombinase XerS [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242391010|dbj|BAH81469.1| tyrosine recombinase [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 356

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 65/326 (19%), Positives = 121/326 (37%), Gaps = 45/326 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTE------EKITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  + ++F  +L             I + T+  L+  ++ AF+   R     
Sbjct: 33  YSFTTLYEYLKEYKRFFDWLMDADLTDATVIADIDLATLEHLTKKDLEAFVLYLRERPSL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-------- 126
                 + +   ++ R+LS + S  KYL +     +      RN+ K  S          
Sbjct: 93  NTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAS 152

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDA---------------RNSAILYLLYGCGLRIS 171
           RA N KQ L L D  +    +  K  +                R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETMGFLEYVDKDYELKLSNRAKSSFRKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLF 230
           EA++L  +++  +   + +  KG K   V +    +  +  Y  +         Q L  F
Sbjct: 213 EAVNLDLKDVNLNMMVIEVIRKGGKRDSVNVAGFAKPYLEAYLAIRKNRYKAEKQDLAFF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +  +   +    T H LRH+ AT L         +   L
Sbjct: 273 LTEYRGVPNRMDASSIEKMVGKYSQDFKI--RVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH     T +YT++ +    + + ++
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNALDKL 356


>gi|323479888|gb|ADX79327.1| phage integrase family protein [Enterococcus faecalis 62]
          Length = 223

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 52/209 (24%), Positives = 103/209 (49%), Gaps = 6/209 (2%)

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            + +++   ++  S+S +K    Y+   K    +  +++  LK+   +   LN+ +   +
Sbjct: 1   MQEKEMQASTINVSVSRLKKLFDYMLIEKYIDYNPFVDIERLKEQRKVIYPLNDYEIKQM 60

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +    +   H  K I  RN  IL L+  CGLRISE   +  ++IM++Q  +R + K +K 
Sbjct: 61  L---TVAKKHPYKHIAQRNVVILMLMIECGLRISEVCEIRDEDIMNNQIIIR-KSKNNKD 116

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R V + P ++K I++Y  +      L    P      GK LN     + ++++++ + + 
Sbjct: 117 RAVAVSPILKKEIIKYQRIKKRKFGLLEGNPFIVSNLGKKLNEKSIWQIMQEIKKQIDIR 176

Query: 258 LST--TAHTLRHSFATHLLSNGGDLRSIQ 284
                + HTLRH++A+  L NG D+ ++ 
Sbjct: 177 DCVRFSGHTLRHTYASMQLRNGLDIYTLS 205


>gi|260641922|ref|ZP_05413998.2| integrase [Bacteroides finegoldii DSM 17565]
 gi|260624125|gb|EEX46996.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 436

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 63/285 (22%), Positives = 111/285 (38%), Gaps = 25/285 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSLKR 90
           +  TL +Y    R    F+      K++     QL+   IR +       +     +L+ 
Sbjct: 157 APTTLSTYLFTYRTLSEFIKAKF--KVSDLAFGQLNEQFIRDYQDFILMEKGHAVDTLRG 214

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L+ +K   +   K   + + +  + +  K+  S P+AL+ +    L D  +     E +
Sbjct: 215 YLAILKKICRIAYKEGHSEKYHFCHFKLPKQKESTPKALSRENFEKLRDLEI----PEKR 270

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKG-DKIRIVPLLPSV 206
                   +       G   ++ +S+T +N+  D+     L+ + K  + +  V LLP  
Sbjct: 271 RSHVITRDLFLFACYTGTAYADVVSITRENLFTDEENNLWLKYRRKKTNYLGRVKLLPEA 330

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              I +Y D     L               P +    +  ++ LR   GL      HT R
Sbjct: 331 LVLIEKYRDDARMTL-------------FPPQDYHTLRANMKSLRLMAGLSQDLVYHTAR 377

Query: 267 HSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           HSFA+ + L  G  + +I  +LGH  + TTQIY  V  K   + M
Sbjct: 378 HSFASLITLEEGVPIETISKMLGHSNIKTTQIYARVTPKRLFEDM 422


>gi|167759261|ref|ZP_02431388.1| hypothetical protein CLOSCI_01608 [Clostridium scindens ATCC 35704]
 gi|167663135|gb|EDS07265.1| hypothetical protein CLOSCI_01608 [Clostridium scindens ATCC 35704]
          Length = 287

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 58/301 (19%), Positives = 121/301 (40%), Gaps = 38/301 (12%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + +   L  ER  +K T++ Y  D R F  F+             R+++  ++ ++ 
Sbjct: 10  ESMEEFAVYLR-ERENAKATIRKYLTDIRTFYNFMGEN----------RRITKEQLLSYK 58

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN--EKQ 133
                +     S+   L+ +  FL++L   ++        ++ ++   +L   L    ++
Sbjct: 59  EWL-VEHYAISSVNSMLAALNQFLEFLGGERL-------KLKRIRVQGTL---LTGEARE 107

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                   L+ T+ E   +    + ++  +   G+R+SE    T ++       +++  K
Sbjct: 108 MEKTDYKRLVETAMEEGRVQL--ALMMETMCATGIRVSELEYFTVES--LRSGMVKVWNK 163

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G   R+VP+   ++K +  Y +       +     +FR   G P N     + ++ L   
Sbjct: 164 GKY-RMVPMPEMLKKNLQRYVEREGIQTGV-----IFRTRNGNPKNRSNIWKEMKSLAGR 217

Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+ P     H LRH FA        +L ++  ILGH  L  T++YT   ++    W+  
Sbjct: 218 AGVDPDKIFPHNLRHLFARTFYKGTNNLVNLAEILGHSSLEITRVYT---TEKIQVWIKN 274

Query: 313 I 313
           I
Sbjct: 275 I 275


>gi|29347856|ref|NP_811359.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253572433|ref|ZP_04849835.1| integrase [Bacteroides sp. 1_1_6]
 gi|29339758|gb|AAO77553.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251837848|gb|EES65937.1| integrase [Bacteroides sp. 1_1_6]
          Length = 409

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 63/285 (22%), Positives = 111/285 (38%), Gaps = 25/285 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSLKR 90
           +  TL +Y    R    F+      K++     QL+   IR +       +     +L+ 
Sbjct: 130 APTTLSTYLFTYRTLSEFIKAKF--KVSDLAFGQLNEQFIRDYQDFILMEKGHAVDTLRG 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L+ +K   +   K   + + +  + +  K+  S P+AL+ +    L D  +     E +
Sbjct: 188 YLAILKKICRIAYKEGHSEKYHFCHFKLPKQKESTPKALSRENFEKLRDLEI----PEKR 243

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKG-DKIRIVPLLPSV 206
                   +       G   ++ +S+T +N+  D+     L+ + K  + +  V LLP  
Sbjct: 244 RSHVITRDLFLFACYTGTAYADVVSITRENLFTDEENNLWLKYRRKKTNYLGRVKLLPEA 303

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              I +Y D     L               P +    +  ++ LR   GL      HT R
Sbjct: 304 LVLIEKYRDDARMTL-------------FPPQDYHTLRANMKSLRLMAGLSQDLVYHTAR 350

Query: 267 HSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           HSFA+ + L  G  + +I  +LGH  + TTQIY  V  K   + M
Sbjct: 351 HSFASLITLEEGVPIETISKMLGHSNIKTTQIYARVTPKRLFEDM 395


>gi|154423273|gb|ABS81541.1| putative phage integrase [Alcaligenes sp. NyZ215]
          Length = 443

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 71/331 (21%), Positives = 127/331 (38%), Gaps = 42/331 (12%)

Query: 16  KERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           KE +  +    +ERG  LS LT +    D   +  FL   T  +  +   R  S  + R 
Sbjct: 122 KEAERLILWAIVERGRALSSLTTE----DAIAYRAFLRRPTPRERWVGPPRARSAPDWRP 177

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F      + +  RS   +LS + +  ++L +++    +    ++   +  +   AL+  +
Sbjct: 178 F-----ARALSARSTAYALSVLGALFRWLIEQRYVLANPFAGIKV--RGRTRVAALDTSR 230

Query: 134 ALTLVDNVLLHT-SHETKWIDARN-------SAILYLLYGCGLRISEALSLTPQNIMDDQ 185
             T  + +L+ T +   +W    +         IL   Y  GLR SE +     +I  D+
Sbjct: 231 GFTEGEWLLVRTIADGLEWSYGWDASAAQRLRFILDFAYATGLRASELVGAALGDIHVDE 290

Query: 186 S---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLN 239
                L + GKG +   V L P  R A+ +Y       +     + + PL   +      
Sbjct: 291 HHDHWLHLIGKGSRPGKVALPPLARSALDQYLVQRGLPVTPARWDPKTPLLASLEQDSAA 350

Query: 240 PGVFQRYIRQLRRYLGLPLST---------------TAHTLRHSFATHLLSNGGDLRSIQ 284
                R    +RR+ G                    + H +RH+ ATH L+ G +L S++
Sbjct: 351 SITGTRLWHVMRRFFGQAADVIAPDNPTVAEKLRRASPHWMRHTHATHALARGAELTSVR 410

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
             L H  ++TT IY   +       M + + 
Sbjct: 411 DNLRHASVATTSIYLQSDEVKRARQMNQAFA 441


>gi|296126327|ref|YP_003633579.1| integrase family protein [Brachyspira murdochii DSM 12563]
 gi|296018143|gb|ADG71380.1| integrase family protein [Brachyspira murdochii DSM 12563]
          Length = 382

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 66/328 (20%), Positives = 134/328 (40%), Gaps = 30/328 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-------------L 66
            +   L I++  S  T+++Y+ +   F  F+    +   +I + +              +
Sbjct: 21  QFADYLSIDK--SPSTVKTYKNNIIYFFKFI-IKQDNDYSIFSEKDYHYICNTEVLYKNI 77

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSL 125
           +   +  +IS +   ++    +   ++ +KS+LK+L K+KI     +++   ++K+   +
Sbjct: 78  NKELLEKYISYQTEHQLSSDIINCRINVVKSYLKFLHKKKIIEAKILIDTFDDIKRPKPI 137

Query: 126 PRA-LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
            +  L  K   TL     +  + +  + + RN  ++ L+   G+R  E   +  +NI  +
Sbjct: 138 IKEQLVVKANQTLDIIKKIERTSKESFTNQRNILMMLLMSNTGIRRKETAGIDIRNINLE 197

Query: 185 QSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI---QLPLFRGIRGKPLNP 240
             T+ I   KG K RIV     ++  +++Y       L  N    Q  LF    G+ L  
Sbjct: 198 NKTITIYKTKGSKPRIVVFSDMIKDVLIDYIAERDEILRKNKIKEQNNLFIKNNGQDLAI 257

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL-STTQIYT 299
                 +R + +     +  T H+ R  FAT +  +G +   I  ++GH  + +TT  Y 
Sbjct: 258 ETMTMIMRVISKRN--KVKITCHSFRRGFATDMAESGTETYLISKMMGHSNINTTTSRYI 315

Query: 300 NVNSKNGGDWMMEIYDQTHPSITQKDKK 327
            V      + M       HP      +K
Sbjct: 316 YVLMNMIKNAMSN-----HPFNKANTEK 338


>gi|255280833|ref|ZP_05345388.1| putative phage integrase/recombinase [Bryantella formatexigens DSM
           14469]
 gi|255268770|gb|EET61975.1| putative phage integrase/recombinase [Bryantella formatexigens DSM
           14469]
          Length = 280

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 114/295 (38%), Gaps = 31/295 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q +   L+ E   ++ T++ Y  D   F  +    +E       I + +    + ++  
Sbjct: 10  LQEFRNQLKAEE-KAQATIEKYMRDVSAFFAYAKEGSE-------IDKYTVIAYKEYL-- 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             T      S+   L+ + SFLK +   + T ++  +     +      R L + +   L
Sbjct: 60  --TGHYAAASVNSMLAAVNSFLKAMGWHECTVKALKIQKEAFRARE---RDLTKGEYFRL 114

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D          K  + R   I+ +L   G+R+SE   +T   +    +T+  +GK    
Sbjct: 115 LDA-------AKKKKNLRLYWIMQVLCATGIRVSELRYITVDALQTGCATVSSKGK---Q 164

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R V L   + + + +Y        N      +F    GKP++       ++ L    G+ 
Sbjct: 165 RTVLLPAPLCRKLRKYIVCQKITGNS-----IFVTRSGKPVDRSNICHDMKALCGEAGIC 219

Query: 258 L-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
                 H LRH FA        DL  +  +LGH  ++TT+IYT  +S+     + 
Sbjct: 220 REKVFPHNLRHLFAVTYYKMKKDLSHLADLLGHASINTTRIYTLASSEEQKRQIE 274


>gi|221215737|ref|ZP_03588698.1| phage integrase family protein [Burkholderia multivorans CGD1]
 gi|221164439|gb|EED96924.1| phage integrase family protein [Burkholderia multivorans CGD1]
          Length = 575

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 123/337 (36%), Gaps = 48/337 (14%)

Query: 16  KERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           KE +  +    +ERG  LS LT +    D   +  FL   T  +  I  +R     + R 
Sbjct: 247 KEAERLILWAIVERGRALSSLTTE----DALAYRAFLRRPTPHERWIGPVRPRGAPDWRP 302

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F     +  +  RS   +LS + +  ++L +++    +    ++   +      AL+   
Sbjct: 303 F-----SGALSARSAAYALSVLGAMFRWLIEQRYVLANPFAGVKV--RDTRGASALDTSH 355

Query: 134 ALTLVDNVLLHTSHETKWIDARN--------------SAILYLLYGCGLRISEALSLTPQ 179
           A T  + +L+ T  +       +                IL   Y  GLR SE +  T  
Sbjct: 356 AFTEGEWLLVRTIADGLEFRKTDVPAAAWTPAAAQRLRFILDFGYATGLRASELVGATLG 415

Query: 180 NIMDDQS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGI 233
           +I  D      L++ GKG K   V L P  R A+  Y       +         PL   +
Sbjct: 416 DIDTDAHGDAWLKVVGKGSKAARVALPPLARTALDRYLVARRLPVTPVRWRPDTPLIPRL 475

Query: 234 RGK---PLNPGVFQRYI-RQLRRYLGLP-----------LSTTAHTLRHSFATHLLSNGG 278
                 P+      + + R   +   L               + H +RH+ ATH L+ G 
Sbjct: 476 TEDGAAPITSVRLWKVMQRFFVQTADLVEADNPALAQKLRQASPHWMRHTHATHALARGA 535

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +L +++  L H  +STT IY + +       +   + 
Sbjct: 536 ELTTVRDNLRHASISTTSIYLHGDDVKRARQLASAFA 572


>gi|169344273|ref|ZP_02865254.1| tyrosine recombinase [Clostridium perfringens C str. JGS1495]
 gi|169297604|gb|EDS79705.1| tyrosine recombinase [Clostridium perfringens C str. JGS1495]
          Length = 236

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 98/223 (43%), Gaps = 30/223 (13%)

Query: 2   EGNNLPEI--VSFELLKERQ------NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY 53
           E N L E   + F+ L++ +       +L  LE  +G S  T++ Y  D   F  FL  Y
Sbjct: 19  ESNELLEKNELKFDFLEKSKHPKRVIEFLNYLENVKGKSLNTVKGYSVDLGLFFKFLKVY 78

Query: 54  TE----------EKITIQT-----IRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKS 97
                       E++ I       I+ ++ ++I AF++   + +     +  R ++ +KS
Sbjct: 79  KGLENNIELEKIEEVEISDLGDNFIKDITLSDIYAFLAFLEKVRNNSAYARARKVATLKS 138

Query: 98  FLKYLKKR-KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
           F K+L  + K+  E+  + + + K +   P  L   Q++T+++++      +      R+
Sbjct: 139 FFKFLNSKIKLIDENPTVELESPKINKRHPVYLTLDQSITVLNSM-----DKGNKNYYRD 193

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             IL L   CG+R+SE  ++  + I  D  T+  +G       
Sbjct: 194 YCILTLFLNCGMRLSELCNIEIEKIKGDTLTIIGKGNKGATCC 236


>gi|310823396|ref|YP_003955754.1| phage integrase [Stigmatella aurantiaca DW4/3-1]
 gi|309396468|gb|ADO73927.1| phage integrase [Stigmatella aurantiaca DW4/3-1]
          Length = 385

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 103/255 (40%), Gaps = 36/255 (14%)

Query: 72  RAFISKRRTQKIGD---RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           RA I KR+  +      +++   LS +   L   +++K+  ++  + +   K        
Sbjct: 126 RAAIGKRKDGEAKPLSLKTINNVLSALSKLLNLAEEQKVIKQAPRVKLFG-KLPKPKFDF 184

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L  ++A  L+D      + E +W       ++ +    GLR  E + L   ++   +  +
Sbjct: 185 LTFEEAGRLID------AAEPEW-----RTLMLVALKTGLRQGELIGLQWADLDLSRGMV 233

Query: 189 RIQG----------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
            ++           KG + R V L  S  +A+  +  L            +F    G+PL
Sbjct: 234 TVRRTIWRGVTDLPKGGRERTVDLPASAVEALKAHRHLRGR--------FVFCQDDGQPL 285

Query: 239 NPGVFQRYIRQLRRYLGLPL---STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             G   + +R+  +   +         H LRH++A+HL   G  L+ IQ ++GH  +  T
Sbjct: 286 TAGKTAQPLRRALKMADIGREEGRIGWHDLRHTYASHLAMKGIPLKVIQELMGHVTIEMT 345

Query: 296 QIYTNVNSKNGGDWM 310
           + Y +++     + +
Sbjct: 346 ERYAHLSPDTRREAV 360


>gi|271965522|ref|YP_003339718.1| integrase/recombinase [Streptosporangium roseum DSM 43021]
 gi|270508697|gb|ACZ86975.1| integrase/recombinase [Streptosporangium roseum DSM 43021]
          Length = 324

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 55/313 (17%), Positives = 105/313 (33%), Gaps = 33/313 (10%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M    +PE     +   R  +   L+     S  + ++      +    ++         
Sbjct: 1   MNVPAVPESPRTPVEPARDPYQVYLDSL--SSAESRRAMRGCLDRLAALVSGDEVSSGAG 58

Query: 61  QTIRQLSYTE---IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES------ 111
           +    L Y     IRA +++R         + + L  ++  L+   +    T        
Sbjct: 59  RPWHLLRYEHTVRIRALMTER---GWSPAYVNKHLVALRRVLREAWRLGQMTAEEYQRAA 115

Query: 112 --NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
               +    L     +P          +V   L     +      R++A+L +LY  G R
Sbjct: 116 DLPTVEHTRLPTGQHVP--------PEVVGAALAACDRDDSPAGTRDAALLAVLYSTGCR 167

Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
            +E   +T  +      +LR++GK DK R+V L       +  +  +        +  P+
Sbjct: 168 RAEIAGMTLGDYDPGSRSLRVRGKRDKERMVYLTTEAVGRLERWLAVRGRPAGA-LFSPI 226

Query: 230 FRGIR-------GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
               R         P+        + +     G  +  T H  R +F   LL  G DL +
Sbjct: 227 GASGRLRVRDGGPAPMTGQAIADILARRLAEAG-AMPRTPHDFRRTFIGELLDAGVDLAT 285

Query: 283 IQSILGHFRLSTT 295
            Q+++GH   +TT
Sbjct: 286 AQALVGHSSPATT 298


>gi|270293803|ref|ZP_06200005.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275270|gb|EFA21130.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 386

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 62/317 (19%), Positives = 115/317 (36%), Gaps = 44/317 (13%)

Query: 15  LKERQNWLQNLE---IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            KE   +L+       +R  +  +  ++    R  L +L  Y +EK T + I        
Sbjct: 86  FKEDTPFLEYYRKMVEDRHKNPESKGNWGNW-RSCLRYLEIYCDEKTTFKDITPEFIAGF 144

Query: 72  RAFI------SKRRT---------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           + F+      + +RT         Q +   S     + +++ +      +I + + +  +
Sbjct: 145 KDFLDNVEKDTHKRTGPRRERDVFQGLSQNSKVSYFNKLRACINQAYDERIISVNPLRGI 204

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              K +      L  ++   L        +   ++   + + +   L   GLR S+   L
Sbjct: 205 EGFKAAEVKRDYLTLEEVKQL-------AATPCRYPILKRAFLFSCL--TGLRKSDIQKL 255

Query: 177 TPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
           T   +    D    +  Q K      + + P   K + E           N + P+F G 
Sbjct: 256 TWSEVQKFGDYTRIIFKQKKTGGQEYLDISPQAEKYLGE---------RGNPEDPVFTGF 306

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
                     QR         G+  + T H  RH+FA  +L  G D+ ++  +LGH  L+
Sbjct: 307 TYGSWTSVELQR----WSMKAGVNKNLTFHCGRHTFAVLMLDLGADIYTVSKLLGHKELA 362

Query: 294 TTQIYTNVNSKNGGDWM 310
           TTQIY  V  KN  + +
Sbjct: 363 TTQIYAKVLDKNKQNAV 379


>gi|149916988|ref|ZP_01905489.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149822266|gb|EDM81657.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 421

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 95/248 (38%), Gaps = 23/248 (9%)

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           +R  + +  +++   L  +   L+  +K  +        +  L+ +      L+ ++A  
Sbjct: 137 RRAGEGLKPKTINNHLMVLSRALRVAQKWGVLDRVP--EIELLRVTKQPFDFLDFEEAER 194

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----- 191
            +     H               + +    GLR+ E L+L  +++     TLR++     
Sbjct: 195 YLAAAREHYPDW--------HVFVLVAARTGLRVGELLALQWKHVRLAGRTLRVELSYTR 246

Query: 192 ------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
                  K  K R VPL   V +A+  + ++          L +F    G+  +      
Sbjct: 247 AGGVSSPKSGKAREVPLTWDVARALEVHREVLGAKARARDAL-VFPNADGERGSLRSVGH 305

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           ++ ++ +   L      H LRH+FA+H +  G  +R +Q  LGH  +  T  Y ++    
Sbjct: 306 FVSRIAKAAKL-RHVHPHMLRHTFASHAVMRGVPMRVVQEWLGHASIEMTMRYAHLAEGI 364

Query: 306 GGDWMMEI 313
           G D +  I
Sbjct: 365 GLDLIDRI 372


>gi|298529884|ref|ZP_07017286.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298531276|ref|ZP_07018676.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508886|gb|EFI32792.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509258|gb|EFI33162.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 394

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 61/313 (19%), Positives = 126/313 (40%), Gaps = 18/313 (5%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           EG    ++   +L +  + +LQ     R +  + +            +L     E     
Sbjct: 91  EGRGRSKLQRAQLPRLYEEYLQFYTQTRQVGHVQIYRVRGTLSALNDYLQNQGME----- 145

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLK 120
            ++ L    + AF+++ R +K    +     SG++ FL+Y   +R+I  +     ++   
Sbjct: 146 -LKDLDVLHMDAFLAE-RNRKYAPETRIHERSGLRGFLRYLYLERQILKKDLSALIQGPP 203

Query: 121 K--SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
               +  PR L  +Q  TL  ++      + +    R+ A+++L Y  GLR  E   +T 
Sbjct: 204 VYAQSRPPRFLTLEQIKTLFQSI-----DKDRPGGLRSYAMIHLAYSLGLRPGEICRVTL 258

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-P 237
            +I+     + +  + +       LP      L  Y      ++   +  L        P
Sbjct: 259 DDILFRDKLIYLPDRKNSSPAKLPLPQGALRALAAYLAWDRPMDPGHRFLLCNTRTPYGP 318

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L P    + I    R  G+    +A+ LRH++A +LL     +  I+ +LGH  + T++ 
Sbjct: 319 LTPLTVSQNISACFRRAGI--KGSAYWLRHTYAQNLLQAEASIFEIKEMLGHDIIKTSKR 376

Query: 298 YTNVNSKNGGDWM 310
           Y +V+++   + +
Sbjct: 377 YLHVHTRLMREVL 389


>gi|308063535|gb|ADO05422.1| integrase-recombinase protein [Helicobacter pylori Sat464]
          Length = 353

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 64/286 (22%), Positives = 126/286 (44%), Gaps = 21/286 (7%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y     +F  +      +KI++++++ +    +  F+S   T  +   + K     +
Sbjct: 72  INTYALPLLKFYEYT-----KKISLKSLKSIDEVLLAEFLS-VYTGGLSLATKKNYRIAL 125

Query: 96  KSFLKYLKKRK-------ITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLLHTS 146
                Y+ K+              + N+  + +   N LP  LN ++    ++   +   
Sbjct: 126 LGLFSYIDKQNQDENEKSYIYNITLKNISGVNQSAGNKLPTHLNNEELEKFLEG--IDKI 183

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLP 204
             +  + ARN  ++ ++   G+R +EAL L  ++   +    T+ I+GKGDK R V L  
Sbjct: 184 EMSAKVRARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLKA 243

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AH 263
              +++L+ + +      +   L LF   +G  L      + + ++  + GL      AH
Sbjct: 244 FHIESLLKEWLIERELYPVKNDL-LFCNQKGNALTQAYLYKQVERIINFAGLRREKNGAH 302

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            LRHSFAT L     DL  +Q  LGH  L+T++IYT+ + +   + 
Sbjct: 303 MLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 348


>gi|238064005|ref|ZP_04608714.1| phage integrase family site-specific recombinase [Micromonospora
           sp. ATCC 39149]
 gi|237885816|gb|EEP74644.1| phage integrase family site-specific recombinase [Micromonospora
           sp. ATCC 39149]
          Length = 306

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 51/261 (19%), Positives = 96/261 (36%), Gaps = 11/261 (4%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQ---LSYTEIRAFISKRRTQKIGDRSLKRS 91
           T  +Y     Q   +L  ++ +            ++   + AF +     +    +    
Sbjct: 37  TRYNYLLAAAQLGRYLGEHSPDPDAEDAADDPCVVTRAHVEAFQAWMIDTR-SASTALNK 95

Query: 92  LSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
             G++ F K+L    +    S +  +R  K    L   + ++    L+D           
Sbjct: 96  HKGLQQFFKWLLVDEQAIDRSPMERVRQPKTLRKLIPVMRDEDTGKLLDAC-----RGKG 150

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
           + + R+ A++ L    G R+SE  +L   ++  +  ++   GKG K R V   P   +A+
Sbjct: 151 FANMRDEALIRLYCNTGARLSEVGNLLVADVDLNTESVHFHGKGAKDRRVRFGPKTARAL 210

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
             Y           +         G PL P   +  +++L +  G+P    AH  RH+FA
Sbjct: 211 SRYLRARDKHKGAALPQLWLAERGGAPLTPNGIKILLKRLGKAAGVP-DVHAHRWRHNFA 269

Query: 271 THLLSNGGDLRSIQSILGHFR 291
                 GGD   +  +LG   
Sbjct: 270 HEWKRAGGDTGDLMLLLGWAS 290


>gi|229113593|ref|ZP_04243041.1| Integrase-recombinase [Bacillus cereus Rock1-15]
 gi|228669892|gb|EEL25287.1| Integrase-recombinase [Bacillus cereus Rock1-15]
          Length = 390

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 65/298 (21%), Positives = 116/298 (38%), Gaps = 34/298 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEE-KITIQTIRQ-------LSYTEIRAFISKRRT 80
           +   + T +SY  +   F   +    EE ++  + +++       L    IR + +  ++
Sbjct: 81  KNRKEHTKKSYVSEILSFCQCMVQNAEEFELNGEDVQRYESLLKVLQPWHIRKYSNWLKS 140

Query: 81  QK-------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--NLKKSNSLPRALNE 131
            K           +L +    I+SFLK+L       +     ++  N+ + +   R L+ 
Sbjct: 141 VKNGRGNSSYSVATLAKKTVLIRSFLKHLHLFGYVDKPLHEELQRANVNEKDRPNRDLSY 200

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRI 190
            + + ++D   +            N  +L  L   G RI E      ++   D +  L++
Sbjct: 201 DEVIKILDFYKVRG-------HLVNYTLLLALASTGARIQELCRTRVKDLYYDGKYWLKV 253

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            GKG K+R + +   + + I E      F   L+     PLF   RG   NP      + 
Sbjct: 254 IGKGGKVRELFISEHLYQCICEVRRKRGFQTILDQGDGDPLFVNQRGNFYNPKTLSNQVT 313

Query: 249 QLRRYLGLPL------STTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYT 299
            + +   L          TAHT RH+FA   +  G  DL  +   LGH  + TT+IY 
Sbjct: 314 DMIKKTNLEFLQYRENPVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYL 371


>gi|218263977|ref|ZP_03477908.1| hypothetical protein PRABACTJOHN_03598 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222388|gb|EEC95038.1| hypothetical protein PRABACTJOHN_03598 [Parabacteroides johnsonii
           DSM 18315]
          Length = 389

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 66/301 (21%), Positives = 119/301 (39%), Gaps = 31/301 (10%)

Query: 20  NWLQNLEIER-GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++L+  E E+ G S  TL+    D R  L    +  E       +  +     R FI+  
Sbjct: 97  DFLKEYEQEKFGFSASTLKG-RRDLR--LKVETYLNETCQPDIVLANVDADFCRGFIAFL 153

Query: 79  RTQKIGDR----SL-----KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           R  K   R    ++         + +   L    +  I T + + ++ +  K    P + 
Sbjct: 154 RYAKNSVRKDGSTISNGAAHHHQAVLNGALNKAVREGILTSNPLKSLAS--KEKYQP-SE 210

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ--NIMDDQST 187
           + ++ LTL +  L          D    A L+  +  GLR+S+  SLT        D  T
Sbjct: 211 SIREYLTLEE--LKAAMAAPCPRDDVKRAFLFSCF-TGLRLSDVRSLTWGKIIKAPDGHT 267

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           L I+ +  K + +  +P  ++A+   Y         +   P+F      P      +R +
Sbjct: 268 LYIRVRMQKTQKLLNVPLSKEALDCLYP------KDDADEPIF----TLPAGASNIERNL 317

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +  +   +    T H  RHSFAT +L+ G D+ +   +LGH  ++TT IY  +  +   
Sbjct: 318 TKWMQNAKITKHITYHCSRHSFATMMLTLGADIYTTSKLLGHANVNTTSIYAKIVDQKKI 377

Query: 308 D 308
           +
Sbjct: 378 E 378


>gi|323344352|ref|ZP_08084577.1| integrase [Prevotella oralis ATCC 33269]
 gi|323094479|gb|EFZ37055.1| integrase [Prevotella oralis ATCC 33269]
          Length = 389

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 52/299 (17%), Positives = 105/299 (35%), Gaps = 24/299 (8%)

Query: 23  QNLEIER-GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           + L+ +R   S+ T  +     +Q   F+    EE I +  I    + + R ++   + +
Sbjct: 110 EELKEQRESKSEGTCCNNRNSDKQLNSFVRSLGEEDIPLTAISIEFFDDYRFYL---KKE 166

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                +  R L  +   +     +     +    ++     N  PR L++     L+   
Sbjct: 167 GYAPATTNRHLCWLSRLMYRAVSQGTIRFNPFEEVKYEAVENK-PRFLSKGDVEKLLVFP 225

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLR-IQGKGDKI 197
           L     E          +       GL  ++  SL         + +  +R  + K +  
Sbjct: 226 LQDEGAELS------RRMFLFSVFSGLAFADLQSLRASQIETNSEGKRYIRKTRQKTEVE 279

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
            ++PL P   + +  Y               +F       ++ G    +++ +    G+ 
Sbjct: 280 SLIPLHPIAEQILSRY-----TKEKSKGDYKIFPDT----MSKGKLSTHLKAVGLACGIR 330

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
              T H  RHSF T  L  G  + SI  ++GH  +++TQIY  +  +     M  +  Q
Sbjct: 331 TPLTWHVGRHSFGTLTLEAGIPMESIAKMMGHSSIASTQIYAQITDQKISSDMDRLIQQ 389


>gi|297379871|gb|ADI34758.1| Tyrosine recombinase xerD [Helicobacter pylori v225d]
          Length = 356

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 63/286 (22%), Positives = 125/286 (43%), Gaps = 21/286 (7%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y     +F  +      +KI++++++ +    +  F+S   T  +   + K     +
Sbjct: 73  INTYALPLLKFYEYT-----KKISLKSLKSIDEVLLAEFLS-VYTGGLSLATKKNYRIAL 126

Query: 96  KSFLKYLKKRK-------ITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLLHTS 146
                Y+ K+              + N+  + +   N LP  LN ++    ++   +   
Sbjct: 127 LGLFSYIDKQNQDENEKSYIYNITLKNISGVNQSAGNKLPTHLNNEELEKFLEG--IDKI 184

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLP 204
             +  +  RN  ++ ++   G+R +EAL L  ++   +    T+ I+GKGDK R V L  
Sbjct: 185 EMSAKVRTRNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLKA 244

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AH 263
              +++L+ + +      +   L LF   +G  L      + + ++  + GL      AH
Sbjct: 245 FHIESLLKEWLIERELYPVKNDL-LFCNQKGSALTQAYLYKQVERIINFAGLRREKNGAH 303

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            LRHSFAT L     DL  +Q  LGH  L+T++IYT+ + +   + 
Sbjct: 304 MLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 349


>gi|282852166|ref|ZP_06261522.1| site-specific recombinase, phage integrase family [Lactobacillus
           gasseri 224-1]
 gi|282556688|gb|EFB62294.1| site-specific recombinase, phage integrase family [Lactobacillus
           gasseri 224-1]
          Length = 139

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 48/132 (36%), Positives = 66/132 (50%), Gaps = 2/132 (1%)

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLN 239
             D   + + GKG+K R VP       A+ EY D     L    +    +F   RG+ L 
Sbjct: 2   DFDLKIILVHGKGNKDRYVPFGKDALDALREYRDDVRLALLGQNEDLGYVFLNNRGQKLT 61

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               +  ++Q+    G+      H LRHSFAT +L+NG DLRS+Q +LGH  LSTTQIYT
Sbjct: 62  GRGIEYIMQQVFIKAGVGGKVHPHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYT 121

Query: 300 NVNSKNGGDWMM 311
           +V  K+      
Sbjct: 122 HVTMKHLQADYQ 133


>gi|221195298|ref|ZP_03568354.1| DNA integration/recombination/invertion protein [Atopobium rimae
           ATCC 49626]
 gi|221185201|gb|EEE17592.1| DNA integration/recombination/invertion protein [Atopobium rimae
           ATCC 49626]
          Length = 401

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 62/306 (20%), Positives = 112/306 (36%), Gaps = 37/306 (12%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT---- 80
           L+   G S  T++ Y+        F+  +  + +   T+  L   +  AF  +       
Sbjct: 77  LKRRNGASPNTIRQYQS-------FVKNHILKYLPRATVDTLVPADFTAFEQQLLKPRED 129

Query: 81  --QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE---KQAL 135
               +   ++      ++S   Y     I + + + N+    +      ++ E    +  
Sbjct: 130 GGAGLSRNTVINVHQFLRSAYNYFVASGICSINPLFNVAKPSQERHEAVSMEEWGFAEID 189

Query: 136 TLVDNVLLHTSHETKWIDARNSAILY-LLYGCGLRISEALSLTPQNIMDDQSTLRIQG-- 192
             +  VL  +    ++      A    L    G+R  E  +L  Q++   Q  + + G  
Sbjct: 190 KAITGVLDKSFTAQEYSFETVYAFAAWLALKTGMRCGEVCALRRQDVNHMQRYIHVSGTV 249

Query: 193 --------------KGDKIRIVPLLPSVRKAILEY--YDLCPFDLNLNIQLPLFRGIRGK 236
                         KG + R V +  +    I  Y         + +    PL   + G 
Sbjct: 250 IEEPRRQPYRRDVTKGRRHRNVSITDADLALIDRYSQLQGKRMGVAIKGATPL-VSVTGA 308

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT- 295
            + P         LRR L LP   T HTLRH+ A+  L+NG DL+++   LGH   +TT 
Sbjct: 309 FMRPTKVSSAFTALRRSLELPAGITFHTLRHTHASWCLANGVDLKTLSERLGHADEATTL 368

Query: 296 QIYTNV 301
           +IY +V
Sbjct: 369 RIYAHV 374


>gi|220908287|ref|YP_002483598.1| integrase domain-containing protein SAM domain-containing protein
           [Cyanothece sp. PCC 7425]
 gi|219864898|gb|ACL45237.1| integrase domain protein SAM domain protein [Cyanothece sp. PCC
           7425]
          Length = 356

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 66/333 (19%), Positives = 122/333 (36%), Gaps = 60/333 (18%)

Query: 8   EIVSFELLKERQ----NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           E+ S  LL  R+     +LQ     R L+  T ++Y  + ++FL +         + +  
Sbjct: 23  EVRSPALLDLREVRVTEFLQA----RSLAANTEKAYRRELKKFLGW---------SDRPW 69

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR--KITTESNILNMRNLKK 121
            +++   +  + +  + Q +   S+ R+L+G+ SF  + +    +         +   + 
Sbjct: 70  AEITPRHLAQYKAHLKQQGLSPNSINRALAGLMSFFDWFRTAYPEQMLHVPTTAVELERV 129

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
                + L+E Q   L          E   I  R+ A+L +L   GLR+ E + L   + 
Sbjct: 130 PLPPAQDLSEVQVAALY-----LVVEERGAISKRDQAVLSVL-AHGLRVDEVVRLNVGDF 183

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLF----RGIRGK 236
              + T+R Q K D    VPL    R  +++Y          L  + PLF    R  R +
Sbjct: 184 DGIRLTIR-QAKDDSTGTVPLARQARDHLVDYLGERQSQQGELEPETPLFLSYGRNRRQQ 242

Query: 237 PLNPGVFQRYIRQLR-RYLGLPLS----------------------------TTAHTLRH 267
            L        +++L  R   +                                  H LRH
Sbjct: 243 RLGYQGIYYLVKKLGQRAAHIAQEILNGQEGPGEEWQTWSAAQLQQILELEQVHPHQLRH 302

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +FAT LL  G +    +++  H   ++ + Y  
Sbjct: 303 TFATGLLLRGMESLHARTLTRHRSEASFKRYAK 335


>gi|49176878|ref|YP_025381.1| putative Tn5504 resolvase [Ralstonia eutropha JMP134]
 gi|72384260|ref|YP_293613.1| phage integrase [Ralstonia eutropha JMP134]
 gi|134287694|ref|YP_001109860.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134287822|ref|YP_001109987.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134288066|ref|YP_001110230.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134291498|ref|YP_001115267.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|296163802|ref|ZP_06846493.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|39777458|gb|AAR31033.1| putative Tn5504 resolvase [Ralstonia eutropha JMP134]
 gi|72123613|gb|AAZ65756.1| phage integrase [Ralstonia eutropha JMP134]
 gi|134132344|gb|ABO60079.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134132472|gb|ABO60455.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134132716|gb|ABO60342.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134134687|gb|ABO59012.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|295885953|gb|EFG65880.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 563

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 65/306 (21%), Positives = 114/306 (37%), Gaps = 45/306 (14%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           + LS LT      D   +  FL   T  +  +   R  + T+ R F+       +  RS+
Sbjct: 259 KALSSLT----TRDATDYRAFLRRPTPRERWVGPPRPRTSTDWRPFVD-----NLSARSI 309

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT-SH 147
             +L+ + +  ++L +++    +    ++   + +    AL    A T  + +L  T ++
Sbjct: 310 AHALAVLSAMFRWLVEQRYVVANPFSGIKV--RGSKRAMALETSHAFTEGEWMLTRTIAN 367

Query: 148 ETKWIDARN-------SAILYLLYGCGLRISEALSLTPQNIMDD---QSTLRIQGKGDKI 197
             +W              +L   Y  GLRISE    T ++I  D      L + GKG K 
Sbjct: 368 GLEWSYGWQAPAAQRLRFMLDFGYATGLRISELADATLRSIEVDAAGDHWLHVVGKGGKP 427

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--------------------LFRGIRGKP 237
             V L P  R A+  Y       ++     P                         R   
Sbjct: 428 ARVTLTPLARTALDRYLQERGLPVSRAHWNPTTSLIGSLDDADAGIKPLRLWEVMRRFFR 487

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L   + +     L   L      + H +RH+ ATH ++ G +L +++  L H  +STT I
Sbjct: 488 LVAQIIKNDHPVLAEKLH---RASPHWMRHTHATHAIARGVELSAVRDNLRHASISTTSI 544

Query: 298 YTNVNS 303
           Y + + 
Sbjct: 545 YLHTDD 550


>gi|298251725|ref|ZP_06975528.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297546317|gb|EFH80185.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 318

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 59/298 (19%), Positives = 108/298 (36%), Gaps = 38/298 (12%)

Query: 41  CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLK 100
               + L+ L         +    +++  + +A+      ++    ++ R+L  +  F  
Sbjct: 25  RSIPRMLVALPPGCSRNAPLLKATEVTSADAKAYRDHLLAKRYAPTTINRALISLMLFFD 84

Query: 101 YLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
                 I   +   ++  ++     P AL++ +   +          +         A+ 
Sbjct: 85  T-----IAESNPFRHLTMIEIVEPAPVALSKTEWNAVRRCAEQAARRD----HGLALALA 135

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            L    G R+SE  +L   ++         +  +GKG K R +PL+   R+ +  Y+   
Sbjct: 136 TLFRYAGPRVSEVAALQIPDVQVSARRGLLIIRRGKGLKHREIPLVQEAREPLDAYFTYR 195

Query: 218 PFDLNLNIQLP-----------------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
                   +                   LF G RG PL     +  I +L +   LP   
Sbjct: 196 EHLAERWRERAVLRGESVASWSRWPDRHLFLGQRG-PLAERGIREIIAKLGQAAKLPSPL 254

Query: 261 TAHTLRHSFATHLLS---NG-----GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
             H LRH+FA  LL     G       L +IQ +LGH  ++TT IYT V++ +    M
Sbjct: 255 GPHDLRHTFAKALLDPAAYGLDRPPMPLPAIQQLLGHADIATTTIYTRVSADDLARMM 312


>gi|170721967|ref|YP_001749655.1| integrase family protein [Pseudomonas putida W619]
 gi|169759970|gb|ACA73286.1| integrase family protein [Pseudomonas putida W619]
          Length = 304

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 58/306 (18%), Positives = 116/306 (37%), Gaps = 23/306 (7%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           LQ L     L+  + Q+     +     L F     + +    +L    +   ++  RT 
Sbjct: 10  LQYLA---RLAPSSQQTMRYILQDAADRLGFIDCNLVDV-PWHKLEPGHVIGLVAALRTD 65

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLP--RALNEKQALTL 137
                S    ++ I+  +    ++ +     +L +R +K    + LP  R L       L
Sbjct: 66  GYAPNSSSLYVNAIRGVMNEAWRQGLIDHEQLLRIREVKPATGSRLPPGRNLRRSLIREL 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D      + + +    R++AI+ LLYG G+R SE++ +  + +  +  +L++ GKG++ 
Sbjct: 126 MDVC----AADPRPQGIRDAAIIALLYGTGMRKSESVDIDLEQVDFEARSLQVLGKGNRQ 181

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNP-GVFQRYIRQLRRY 253
            I    P     +  + +L    L        F   R  RG  +    + +  I  + R 
Sbjct: 182 LIKYAPPWAFAKLQAWLELRRQSLPEGASDDPFLFNRIRRGNHITRARITKHAIYYIARQ 241

Query: 254 --LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               + +    H  R +F T ++    DL   Q +  H  + TT  Y     +   +   
Sbjct: 242 RGAQVGVKIMPHDFRRAFITRVIEE-HDLSIAQKLAHHANIQTTASY----DRRDDNERR 296

Query: 312 EIYDQT 317
           +  D+ 
Sbjct: 297 QAVDRF 302


>gi|229048170|ref|ZP_04193739.1| Phage integrase [Bacillus cereus AH676]
 gi|228723157|gb|EEL74533.1| Phage integrase [Bacillus cereus AH676]
          Length = 360

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 68/322 (21%), Positives = 133/322 (41%), Gaps = 36/322 (11%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  ++W +  ++ +G +K T+     +  +F+ F   Y  E         +S  ++  F 
Sbjct: 28  KLIEDW-ERQQVVKGFTKETVALNLRNIDEFIKFNKKYVWE---------ISAEDVEKFY 77

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL------ 129
                + +   + ++  S I +F  +LK RK     N + +   +  +   +        
Sbjct: 78  YSLVGKGLSHSTRRKYQSNISTFYSFLKSRKSLELYNSIGVLVPEVIDEFNKFFHRKDDD 137

Query: 130 ------NEKQALTLVDNVLLHT--SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
                  +K+ L +  N L     +    +  AR+      L   GLRI+E + L   ++
Sbjct: 138 DVRVIPPKKEILDMFFNELKSRILTSRKYYTVARDYVFFKTLSLSGLRINELVMLDINDL 197

Query: 182 MDD---QSTLRIQ------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFR 231
             D      + ++      G G K R VP+L  + K +  Y +     L  N +   LF 
Sbjct: 198 RFDLGHNGKIHVRYGKGSRGTGHKPRWVPMLSGLDKLLEWYLEEILPGLKNNQVNAALFL 257

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
              G+ +     +  + + ++ +G+P S   +AH LRH+FAT+ +  G D+ ++  +LGH
Sbjct: 258 SEAGERVGRDTMRSNLIRRQKEIGIPKSEQFSAHQLRHAFATNYVELGVDILTMSKLLGH 317

Query: 290 FRLSTTQIYTNVNSKNGGDWMM 311
             +STT  Y   +S    + + 
Sbjct: 318 SNVSTTAGYLEPSSNFIENRIR 339


>gi|170700906|ref|ZP_02891892.1| integrase family protein [Burkholderia ambifaria IOP40-10]
 gi|170134184|gb|EDT02526.1| integrase family protein [Burkholderia ambifaria IOP40-10]
          Length = 640

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 71/339 (20%), Positives = 123/339 (36%), Gaps = 51/339 (15%)

Query: 16  KERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           KE +  +    +ERG  LS LT +    D   +  F+   T  +  +  +R     + R 
Sbjct: 309 KEAERLILWAIVERGRALSSLTTE----DAVAYRAFIRRPTPHERWVGPVRPRGAPDWRP 364

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F     +  +  RS   +LS + +  ++L +++    +    ++   +      AL+   
Sbjct: 365 F-----SGGLSARSAAYTLSVLGALFRWLIEQRYLLANPFAGVKV--RDTRGANALDTSH 417

Query: 134 ALTLVDNVLLHTSHE-----------------TKWIDARNSAILYLLYGCGLRISEALSL 176
           A T  + +L+ T  +                 T     R   IL   Y  GLR SE +  
Sbjct: 418 AFTEGEWLLVRTIADGLEFRKDKPSGAPGSGWTPAAAQRLRFILDFGYATGLRASELVGA 477

Query: 177 TPQNIMDDQS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLF 230
           T  +I  D      L++ GKG K   V L P  R A+  Y       +         PL 
Sbjct: 478 TLGDIDTDAHGDAWLKVIGKGSKAARVALPPLARTALDRYLVARRLPVTPVRWRPDTPLI 537

Query: 231 RGIRGK---PLNPGVFQRYI-RQLRRYLGLP-----------LSTTAHTLRHSFATHLLS 275
             +       +      + + R   +   L               + H +RH+ ATH L+
Sbjct: 538 PSLAEDGAAAITSVRLWKVMQRFFAQTAALVDADNPALAQKLRQASPHWMRHTHATHALA 597

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            G +L +++  L H  +STT IY + +       M   +
Sbjct: 598 RGAELTTVRDNLRHASISTTSIYLHGDDVKRARQMSSAF 636


>gi|223932948|ref|ZP_03624943.1| integrase family protein [Streptococcus suis 89/1591]
 gi|223898394|gb|EEF64760.1| integrase family protein [Streptococcus suis 89/1591]
          Length = 175

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 49/148 (33%), Positives = 74/148 (50%), Gaps = 5/148 (3%)

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
            GLRISE  +L   NI  +  T++I  KG K+R++ +      ++LE Y         + 
Sbjct: 13  TGLRISELCNLKLDNINLENRTIQILEKGKKVRLLYIGNDETLSLLEDYIAHHC----SH 68

Query: 226 QLPLFRGIRGK-PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
              LF  ++    L     +  ++ +   L L    T H  RHSFAT LL NG D+R IQ
Sbjct: 69  SSYLFTSVKNDDHLKEQSVRLSLKNISHSLQLKKHITPHMFRHSFATMLLDNGVDIRQIQ 128

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMME 312
            +LGH  ++ TQIYT+V+     + + E
Sbjct: 129 HLLGHSNINVTQIYTHVSQSKQVEILSE 156


>gi|308182836|ref|YP_003926963.1| integrase-recombinase protein [Helicobacter pylori PeCan4]
 gi|308065021|gb|ADO06913.1| integrase-recombinase protein [Helicobacter pylori PeCan4]
          Length = 356

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 63/286 (22%), Positives = 126/286 (44%), Gaps = 21/286 (7%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y     +F  +      +K+++++++ +    +  F+S   T  +   + K     +
Sbjct: 73  INTYALPLLKFYEYA-----QKLSLKSLKNIDEVMLAEFLS-IYTGGLSLATKKNYRIAL 126

Query: 96  KSFLKYLKKRK-------ITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLLHTS 146
                Y+ K+              + N+  + +   N LP  LN ++    +++  +   
Sbjct: 127 LGLFSYIDKQNQDENEKSYIYNITLKNISGVNQSAGNKLPTHLNNEELEKFLES--IDKI 184

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLP 204
             +  + ARN  ++ ++   G+R +EAL L  ++   +    T+ I+GKGDK R V L  
Sbjct: 185 EMSAKVRARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLKA 244

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AH 263
              +++L+ +        +   L LF   +G  L      + + ++  + GL      AH
Sbjct: 245 FHIESLLKEWLTERELYPVKNDL-LFCNQKGSALTQAYLYKQVERIINFAGLRREKNGAH 303

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            LRHSFAT L     DL  +Q  LGH  L+T++IYT+ + +   + 
Sbjct: 304 MLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 349


>gi|308062001|gb|ADO03889.1| integrase-recombinase protein [Helicobacter pylori Cuz20]
          Length = 355

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 64/286 (22%), Positives = 126/286 (44%), Gaps = 21/286 (7%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y     +F  +      +KI++++++ +    +  F+S   T  +   + K     +
Sbjct: 72  INTYALPLLKFYEYT-----KKISLKSLKSIDEVLLAEFLS-VYTGGLSLATKKNYRIAL 125

Query: 96  KSFLKYLKKRK-------ITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLLHTS 146
                Y+ K+              + N+  + +   N LP  LN ++    ++   +   
Sbjct: 126 LGLFSYIDKQNQDENEKSYIYNITLKNISGVNQSAGNKLPTHLNNEELEKFLEG--IDKI 183

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLP 204
             +  + ARN  ++ ++   G+R +EAL L  ++   +    T+ I+GKGDK R V L  
Sbjct: 184 EMSAKVRARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLKA 243

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AH 263
              +++L+ + +      +   L LF   +G  L      + + ++  + GL      AH
Sbjct: 244 FHIESLLKEWLMERELYPVKNDL-LFCNQKGSALTQAYLYKQVERIINFAGLRREKNGAH 302

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            LRHSFAT L     DL  +Q  LGH  L+T++IYT+ + +   + 
Sbjct: 303 MLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 348


>gi|293379096|ref|ZP_06625248.1| site-specific tyrosine recombinase XerS [Enterococcus faecium
           PC4.1]
 gi|292642301|gb|EFF60459.1| site-specific tyrosine recombinase XerS [Enterococcus faecium
           PC4.1]
          Length = 361

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 62/344 (18%), Positives = 135/344 (39%), Gaps = 51/344 (14%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFIS 76
            ++++Q+   ++  S  T   Y  + + F  +L +       +I +IRQL+  ++  + S
Sbjct: 21  IKDFVQD-REDKDQSPRTTLEYLKNYKLFYEWLLSESIVPDTSITSIRQLTAYDLNLYKS 79

Query: 77  KRRTQ--------------------KIGDRSLKRSLSGIKSFLKY-------LKKRKITT 109
             + +                     +   ++ R+++ +K   KY          +    
Sbjct: 80  HLKRRTKENVKKETTKTKLKDNNNLGLSTSTINRNITALKVLFKYLSKSSNNPLGKPYLD 139

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVD----NVLLHTSHETK------------WID 153
            + +  +  +    +L    N  +    +D    N L + ++E K               
Sbjct: 140 NNPMDQVTTITDKTTLAARANAIEKKLFLDEDTQNYLDYIANEYKNTLSKRALIYYHRDV 199

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            R+ AI  L+ G GLR+SE +++   ++  D++ + +  KG+K   V +   V + +  Y
Sbjct: 200 ERDLAINALILGSGLRLSEVVNINLDDLSLDKNKVVVTRKGNKRDAVNIAAFVMEYLANY 259

Query: 214 YDLCPFDLNL-NIQLPLFRGIRG---KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
             +      +   +  LF  I     K ++    +R + +  +  G  +  + H LRH+ 
Sbjct: 260 LAIRKERYKVTENEKALFLAIYQGEAKRISGIAIERMVAKYSK--GFRVQVSPHKLRHTL 317

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           AT L      L      LGH   +TT +YT++++    D +  +
Sbjct: 318 ATRLYQQTNSLVLTAQQLGHSSTNTTTLYTHIDNAATIDALNAL 361


>gi|260593266|ref|ZP_05858724.1| integrase [Prevotella veroralis F0319]
 gi|260534823|gb|EEX17440.1| integrase [Prevotella veroralis F0319]
          Length = 431

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 56/290 (19%), Positives = 104/290 (35%), Gaps = 15/290 (5%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           R    F+     + I+I TI +  + E R F+ KR    +   ++  +L  +   +    
Sbjct: 136 RNLREFVENKGVQDISIGTITEDLFEEYRFFLKKR---GLKASTVNSNLCWLSRLMFRAV 192

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
            ++I   +   N +  K+   + R L +   + L+   +     E          +    
Sbjct: 193 SKRIIRCNPFENAKYDKEEKKI-RFLQKSDVMKLMAMKMNEREAELA------RLMFVFS 245

Query: 164 YGCGLRISEALSLTPQNIM---DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
              GL IS+  +L  ++I    D Q  +R  + K     IVPL P     I         
Sbjct: 246 CFTGLAISDMENLEYKHIQTAADGQMYIRKERQKTKVEFIVPLHPIAEAIINHCRSEKRR 305

Query: 220 DLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
                        +      +  V    +  + +  G+    + H  RH+F T  LS G 
Sbjct: 306 SEEQQTVKEKDDNLVFHRDCSRSVMDAKLSIVGKACGICQRLSFHMARHTFGTMSLSAGI 365

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
            + SI  ++GH  +S+TQ+Y  V  K     M  +  +      +  ++ 
Sbjct: 366 PIESIAKMMGHASISSTQVYAQVTDKKISKDMDRLIAKQSAKEKETSERE 415


>gi|229113526|ref|ZP_04242975.1| Phage integrase [Bacillus cereus Rock1-15]
 gi|229162106|ref|ZP_04290078.1| Phage integrase [Bacillus cereus R309803]
 gi|228621357|gb|EEK78211.1| Phage integrase [Bacillus cereus R309803]
 gi|228669944|gb|EEL25338.1| Phage integrase [Bacillus cereus Rock1-15]
          Length = 351

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 61/293 (20%), Positives = 116/293 (39%), Gaps = 29/293 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +  S+ T Q Y  D   FL ++         I TI++LS+ ++  +  +  ++K    +L
Sbjct: 63  KKRSERTKQQYLHDLSHFLRYIKE------AIGTIQELSHNDVEIYFYEL-SKKYAATTL 115

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++  + ++ FLKY+      +++    ++ +  KK   + R L  ++   ++D       
Sbjct: 116 RKKKTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLYPEEVTQILD------- 168

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----DQSTLRIQGKGDKIRIVPL 202
            E K  +       +LL   GLRI E  +    +++     +   LR+ GKG+K R V +
Sbjct: 169 -ELKKSNYFVYTAFFLLTTTGLRIEEIATAKWADLVFHSSLNAYLLRVVGKGNKSREVRI 227

Query: 203 LPSVRKAILEYYDLCPF--DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-- 258
                 A+     L      L+ +          G           + +      L    
Sbjct: 228 FEDTLDALCHVRSLRKQTTKLDASNTSAFLPKADGSNYRADYLSSLVAKKIEETNLTFLR 287

Query: 259 ----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                 T HT RH  A +L+  G +L+ I+  LGH  + TT+ Y    ++   
Sbjct: 288 YRQDRITPHTCRHFMANYLMEKGIELKKIRDYLGHESIMTTERYLRERTRRQN 340


>gi|121593736|ref|YP_985632.1| phage integrase family protein [Acidovorax sp. JS42]
 gi|120605816|gb|ABM41556.1| phage integrase family protein [Acidovorax sp. JS42]
          Length = 565

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 64/340 (18%), Positives = 117/340 (34%), Gaps = 68/340 (20%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK--------- 82
           S  T ++Y  +  + +++             +  L+  +  A+ +  R            
Sbjct: 235 SAATQRAYRKEAERLILWAIVERGR-----ALSSLTTEDAIAYRAFLRHPGPRARWVGAP 289

Query: 83  --------------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
                         +  RS   +LS + +  ++L +++    +    +   K   S P  
Sbjct: 290 QPRLSPAWRPFAGELSARSAAYALSVLNALYRWLIEQRYVLANPFAGV---KVRGSRPAQ 346

Query: 129 LNEKQALTLVDNVLLHT-SHETKWIDARN-------SAILYLLYGCGLRISEALSLTPQN 180
           L+   A T  +  LL   +   +W    +         +L   Y  GLRISE +      
Sbjct: 347 LDTSHAFTEHEWKLLRVVADGLEWSYGWSEPAAQRLRFMLDFAYATGLRISEFVGARLGA 406

Query: 181 IMDDQS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR-----G 232
           +  D      + + GKG K   V L P  R A+  Y       +  +   P        G
Sbjct: 407 VDSDAHGDTWIGVVGKGHKAGKVVLPPLARAALDRYLVQRGLPVTPSKWRPSTPLIGSLG 466

Query: 233 IRGKPLNPGVFQRYIRQ---------------LRRYLGLPLSTTAHTLRHSFATHLLSNG 277
             G  ++     R +++               L   L L    T H  RH+ ATHLL  G
Sbjct: 467 EDGSGISSWRLWRVMKRFFATAAEVVEEATPALAEKLRL---ATPHWTRHTHATHLLEGG 523

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            +L +++  L H  L+TT +Y + +         ++ D+ 
Sbjct: 524 AELTTVRDNLRHASLATTSMYLHTDDARRA---KQVADRF 560


>gi|303236457|ref|ZP_07323044.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483308|gb|EFL46316.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 431

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 53/290 (18%), Positives = 109/290 (37%), Gaps = 15/290 (5%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           R    F+     + I+I TI +  + E R F+ KR    +   ++  +L  +   +    
Sbjct: 136 RNLREFVENKGVQDISIGTITEDLFDEYRFFLKKR---GLKASTVNSNLCWLSRLMFRAV 192

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
            ++I   +   N +  K+   + R L +   + L+   +     E          +    
Sbjct: 193 SKRIIRCNPFENAKYEKEEKKI-RFLQKSDVMKLMSMRMNDREAELA------RLMFVFS 245

Query: 164 YGCGLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
              GL IS+  +L  ++I    D Q  +R + +  K+  +  L  + +AI+ +       
Sbjct: 246 CFTGLAISDMENLEYKHIQTTADGQMYIRKERQKTKVEFIVPLHPIAEAIISHCQKEQER 305

Query: 221 LNLNIQLPLFRGIRGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
                 +             +  V    +  + +  G+    + H  RH+F T  LS G 
Sbjct: 306 SEEQQTVKEKDDHLVFHRNCSRSVMDTKLSIVGKACGIRQRLSFHMARHTFGTMSLSAGI 365

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
            + SI  ++GH  +S+TQ+Y  V  K   + M  +  +      +  ++ 
Sbjct: 366 PIESIAKMMGHASISSTQVYAQVTDKKISEDMDRLIAKQSAKEKETSERE 415


>gi|210610558|ref|ZP_03288484.1| hypothetical protein CLONEX_00674 [Clostridium nexile DSM 1787]
 gi|210152417|gb|EEA83423.1| hypothetical protein CLONEX_00674 [Clostridium nexile DSM 1787]
          Length = 425

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 49/305 (16%), Positives = 115/305 (37%), Gaps = 34/305 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +   +E+K+   +I  +  ++ + +  + + + +   ++  S   +K+      +     
Sbjct: 115 MKLLSEDKLGAASIDSVKLSDAKEWALRMQEKGVAYNTICNSKRSLKAIFYMAVQDDCLR 174

Query: 110 ESNI-LNMRNLKKSNSLPRA-LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     +  +   +++P+  L   Q   L+D +      +   + A+    + +L   G
Sbjct: 175 KNPFDFQINEVINDDTVPKVPLTPTQENELLDFM------QNDPVYAKYYDEVVILLETG 228

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKA-- 209
           LRISE   LTP ++  ++  + +                       R VP+  +  +A  
Sbjct: 229 LRISELCGLTPADLNFEKRFVNVDHQLLRSTEDGYYIEAPKTESGFRQVPMSAAAYEAFE 288

Query: 210 -ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTA 262
            +L+             +  LF    G P     +    + L +         LP   T 
Sbjct: 289 RVLKKRRDGRCIEVDGYKDFLFLNRDGLPKTAVNYDAMFKCLAKKYNKCHKEPLPDVMTP 348

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPSI 321
           HT+RH+F T + + G + +++Q I+GH  +  T   Y +    +  + M  +  +   + 
Sbjct: 349 HTMRHTFCTRMANAGMNPKALQYIMGHANIVMTLNYYAHATFHSAQEEMERLQAKAKTTA 408

Query: 322 TQKDK 326
             K +
Sbjct: 409 EAKPE 413


>gi|191638411|ref|YP_001987577.1| site-specific tyrosine recombinase XerS [Lactobacillus casei BL23]
 gi|190712713|emb|CAQ66719.1| Tyrosine recombinase xerC [Lactobacillus casei BL23]
 gi|327382442|gb|AEA53918.1| Site-specific recombinase, phage integrase family [Lactobacillus
           casei LC2W]
 gi|327385640|gb|AEA57114.1| Site-specific recombinase, phage integrase family [Lactobacillus
           casei BD-II]
          Length = 370

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 144/362 (39%), Gaps = 48/362 (13%)

Query: 1   MEGNNLPEIVSFELLKERQNWL-QNLEIERGL--SKLTLQSYECDTRQFLIFL------A 51
           M   N  +++   +L    +++    + ++ +  +  TL  Y    ++FL +L      A
Sbjct: 1   MSTQNYSKLI-HTMLPALPDYIQDYYQSQKAIPIADSTLYQYLHFYQEFLNWLINSGVTA 59

Query: 52  FYTEEKITIQTIRQLSYTEIRAFISKR--------RTQKIGDRSLKRSLSGIKSFLKYLK 103
             + + + +  +  LS  + +AF++            +++  RS+   L GIK+  ++L 
Sbjct: 60  ASSPQTVPLTVLEHLSLRDAQAFMAYLLERPSKTHHNKRMTRRSVALRLVGIKALYRFLT 119

Query: 104 KR-------------------KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           +                    K+ T +   + RN K    L     + + L  +D     
Sbjct: 120 EESEPHADGEPYFYRNVWNKVKLKTHTETASYRNHKLQEMLFVGGEDAKFLQWLDQSYAQ 179

Query: 145 TSHETKWIDA-----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                          RN A++ LL+G G+R+SE +++  +++  D+ T+++  KG+    
Sbjct: 180 QLPAKPRRYFEATKVRNLAMIALLFGSGVRVSELVNMNLEDLNMDRHTVQVVRKGNFQDR 239

Query: 200 VPLLPSVRKAILEYYDLCPFDLNL-NIQLPLF---RGIRGKPLNPGVFQRYIRQLRRYLG 255
           V     +   +  Y       +       PLF    G +   +     + + ++     G
Sbjct: 240 VNFADWIDPYVQAYLTQRAAIIGYQKPTSPLFVTVVGQKINRIRQNTIEAFFKRYTTDYG 299

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
               +T H  RH+  T++ +   D++ +   LG    S T +Y N++ K+G + + E+ +
Sbjct: 300 --RPSTPHKARHTLGTNIYTVTKDVQQVADQLGQTTTSATDLYINLSDKSGKEALREVSE 357

Query: 316 QT 317
             
Sbjct: 358 TA 359


>gi|218905655|ref|YP_002453489.1| transposase A [Bacillus cereus AH820]
 gi|218538676|gb|ACK91074.1| transposase A [Bacillus cereus AH820]
          Length = 361

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 68/349 (19%), Positives = 132/349 (37%), Gaps = 69/349 (19%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E+++  + +++ L+   G +  T+++Y    + F  F++           +  L + E+ 
Sbjct: 24  EVVEPVKKYIKYLDNT-GKAPNTIKTYCYHLKLFYEFMSQRGI------GLEDLKFEEMS 76

Query: 73  AFISKRRT--------------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI----- 113
            F+   R                K  + S+   L+ + SFL+YL +       ++     
Sbjct: 77  NFVGWLRNPTGDVKVIDLQPKKAKREETSVNAILNAVTSFLEYLNRTGDFKAIDMTKEAR 136

Query: 114 ------------------LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
                              N+  L+    + + L  +Q   ++D               R
Sbjct: 137 GRNFKGFLYHISKGKSYQKNILKLRVKKKIVQVLEHEQVKAIIDAC----------HTKR 186

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----------KGDKIRIVPLLPS 205
           +  ++ L+Y  GLR+ E LSL  ++I    + + I            K  K R + +   
Sbjct: 187 DKLLIMLMYEGGLRVGEVLSLRIEDISTWDNQINITPRDHNENGAYIKLRKERKIDVSKE 246

Query: 206 VRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           +     +Y      +   +  I + L     GKPL        IR+L +  G+    TAH
Sbjct: 247 LMALYTDYLVHEYGEDLEHDYIFINLKESYFGKPLKYQSVLDLIRRLVKRTGITF--TAH 304

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMM 311
            LRH+ AT L+ +G D   +Q  LGH  + TT   Y +++ ++  +   
Sbjct: 305 MLRHTHATELIRSGWDAAYVQKRLGHAHVQTTLDTYVHLSDQDMKNEYK 353


>gi|229051823|ref|ZP_04195272.1| Integrase-recombinase [Bacillus cereus AH676]
 gi|229125217|ref|ZP_04254335.1| Integrase-recombinase [Bacillus cereus 95/8201]
 gi|228658243|gb|EEL13965.1| Integrase-recombinase [Bacillus cereus 95/8201]
 gi|228721530|gb|EEL73025.1| Integrase-recombinase [Bacillus cereus AH676]
          Length = 390

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 122/313 (38%), Gaps = 34/313 (10%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE--------KITIQTIRQLSYTEIRAF 74
           ++++ ++   + T +SY  +   F   +  + EE        +     ++ L    IR +
Sbjct: 75  KDMDEKKNRKEDTKKSYVSEILSFCQCMVQHAEEFELNGEEVQQNDSLLKTLQPWHIRKY 134

Query: 75  ISKRRT-------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--NLKKSNSL 125
            +  +              +L +    I+SFLK+L       +     ++  N+ + +  
Sbjct: 135 NAWLKQVENGRNGDTYAVATLAKKTVLIRSFLKHLHVFSYIEKPLHEELKRANVNEQDRP 194

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDD 184
            R L+  + + +++                N  IL  L   G RI E  +   ++   D 
Sbjct: 195 NRDLSYDEVMKILEFYKEQG-------HLVNYTILLALASTGARIQELCTARVKDLHYDG 247

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGV 242
           +  L++ GKGDK+R + +   + + I E      F   LN   + P+F   RG   NP  
Sbjct: 248 KYWLKVTGKGDKVRELFIPEHLFQCISEMRRRRGFQTVLNRGDESPVFINQRGNFYNPKT 307

Query: 243 FQRYIRQLRRYLGLPL------STTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTT 295
               +  + +   L          TAHT RH+FA   +  G  DL  +   LGH  + TT
Sbjct: 308 LSNQVTDMIKKTNLDFLKYRENPVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTT 367

Query: 296 QIYTNVNSKNGGD 308
           +IY   + K   +
Sbjct: 368 KIYLEKHMKRKNN 380


>gi|258648849|ref|ZP_05736318.1| putative nicotinate-nucleotide pyrophosphorylase [Prevotella
           tannerae ATCC 51259]
 gi|260850863|gb|EEX70732.1| putative nicotinate-nucleotide pyrophosphorylase [Prevotella
           tannerae ATCC 51259]
          Length = 334

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 122/297 (41%), Gaps = 28/297 (9%)

Query: 42  DTRQFLIFLAFYTEEKITIQT----IRQLSYTEIRAFISKRRTQKI---GDRSLKRSLSG 94
           D ++ + F   Y E  + +        ++    I + +  +  Q +     +++    S 
Sbjct: 19  DAKEAVGFSRKYFESNLGLLDRFFIEEKVQTPFITSALIDKWGQTLTNNSYKTICSKYSI 78

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +  F KY+             +   K +  +P     +Q  ++        + +   +D+
Sbjct: 79  LAQFTKYMNNIGFPCYVP--RIPKNKANTYVPYIFTHEQVRSIFTVCDSLVASDHGNMDS 136

Query: 155 RNS---AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAI 210
           R     AIL LLYG G+R+SEA SL  Q+I  ++  + I+  K    R++P+  S+ + +
Sbjct: 137 RLFSIPAILRLLYGTGMRVSEATSLLNQDINLEKRVITIRKTKNQCQRLIPVCSSLYRVL 196

Query: 211 LEYYDLCPF---DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP----LSTTAH 263
            +Y +           N++ P F    G PL+      + R + R  G+P         H
Sbjct: 197 SQYVEARDRLPLPHADNMESPFFISPSGLPLSQSRIYAWFRIILRKCGIPHCAKKGPRVH 256

Query: 264 TLRHSFATHLLS----NGGD----LRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            LRH+FA H L     NG D    L  +   LGH +LS T+ Y  +  +   D + +
Sbjct: 257 DLRHTFAVHSLMHQVKNGADVYCTLPILAVFLGHKKLSDTETYVRLTQEMYSDILKQ 313


>gi|167924633|ref|ZP_02511724.1| integrase/recombinase [Burkholderia pseudomallei BCC215]
          Length = 323

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 111/276 (40%), Gaps = 22/276 (7%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T ++Y      FL + A        + +I  +    + +++ + + +     ++K+ L
Sbjct: 41  PHTRRAYARAASDFLTWCA-----DAGVSSITAVQPLHVASWV-ELQNRTHAASTVKQRL 94

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSL---PRALNEKQALTLVDNVLLHTSHET 149
           + I+    +L   ++   ++  ++R+   +      P  L+  +A  L+D++ + T    
Sbjct: 95  AAIRHLFDWLVTGQVVPVNSAASVRSPSHTVHTGATP-VLDPAEARQLLDSIDVSTP--- 150

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVR 207
             I  R+ A++ L+     RI  AL++   ++   Q    +R++ KG K   +P   ++ 
Sbjct: 151 --IGLRDRALIALMVFSFARIGAALAMRVDDVYVQQRRLWIRLREKGGKAHAMPCHHTLE 208

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-----YIRQLRRYLGLPLSTTA 262
            A+  Y D      +    L          L+     +      +R+     G+     +
Sbjct: 209 MALRAYLDGTGIVFDRKGALFRTIARGTGQLSETTLAQANAYVMVRRRAAAAGIATKIGS 268

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           H LR +  T  L NGG L +  +I  H    +TQ Y
Sbjct: 269 HALRATGITTYLRNGGTLENAAAIANHVSTRSTQRY 304


>gi|160937770|ref|ZP_02085129.1| hypothetical protein CLOBOL_02662 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439209|gb|EDP16962.1| hypothetical protein CLOBOL_02662 [Clostridium bolteae ATCC
           BAA-613]
          Length = 321

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 62/321 (19%), Positives = 119/321 (37%), Gaps = 42/321 (13%)

Query: 1   MEGNNLPEIVSFELLKE-----RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE 55
           ME  N  E    ELL E        + + L I+  +S  T+ +Y    R F  +      
Sbjct: 36  MESPNFLEHA--ELLDENTPHYLNAFHKYL-IQHNMSPNTITAYIYSVRHFFTYFGQLNS 92

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
             +++  +  L +                 +++   +  +  FLK+              
Sbjct: 93  NNVSLYKVYLLDH--------------YQPQTVNMRIRALNCFLKFQGISDY-------R 131

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +R L+            QA        L    +  +       I+  +   G+R+SE +S
Sbjct: 132 IRALRLQQKKYTDYIISQADYEYLKRRLREDEQYTF-----YFIIRFITATGVRVSELIS 186

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
              Q+++       I  KG+K+R V +  ++++  L +      +       PLF     
Sbjct: 187 FQIQDVI--NGYKDIYSKGNKMRRVYIPTALQEDTLRWL-----ESEFRKNGPLFLSHLK 239

Query: 236 KPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           + ++    +  ++       L P     H+ RH FA + + NGGD+  + ++LGH  + T
Sbjct: 240 RGISVSGIRSQLKTFAYRYHLDPKVVYPHSFRHRFAKNFIENGGDIAFLSNLLGHTSIET 299

Query: 295 TQIYTNVNSKNGGDWMMEIYD 315
           T+IY   +S      + +I D
Sbjct: 300 TRIYLRRSSTEQSLIVNQIVD 320


>gi|115360449|ref|YP_777586.1| phage integrase family protein [Burkholderia ambifaria AMMD]
 gi|115285777|gb|ABI91252.1| phage integrase family protein [Burkholderia ambifaria AMMD]
          Length = 578

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 71/339 (20%), Positives = 123/339 (36%), Gaps = 51/339 (15%)

Query: 16  KERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           KE +  +    +ERG  LS LT +    D   +  F+   T  +  +  +R     + R 
Sbjct: 247 KEAERLILWAIVERGRALSSLTTE----DAVAYRAFIRRPTPHERWVGPVRPRGAPDWRP 302

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F     +  +  RS   +LS + +  ++L +++    +    ++   +      AL+   
Sbjct: 303 F-----SGGLSARSAAYTLSVLGALFRWLIEQRYLLANPFAGVKV--RDTRGANALDTSH 355

Query: 134 ALTLVDNVLLHTSHE-----------------TKWIDARNSAILYLLYGCGLRISEALSL 176
           A T  + +L+ T  +                 T     R   IL   Y  GLR SE +  
Sbjct: 356 AFTEGEWLLVRTIADGLEFRKDRPSGAPGSGWTPAAAQRLRFILDFGYATGLRASELVGA 415

Query: 177 TPQNIMDDQS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLF 230
           T  +I  D      L++ GKG K   V L P  R A+  Y       +         PL 
Sbjct: 416 TLGDIDTDAHGDAWLKVIGKGSKAARVALPPLARTALDRYLVARRLPVTPVRWRPDTPLI 475

Query: 231 RGIRGK---PLNPGVFQRYI-RQLRRYLGLP-----------LSTTAHTLRHSFATHLLS 275
             +       +      + + R   +   L               + H +RH+ ATH L+
Sbjct: 476 PSLAEDGAAAITSMRLWKVMQRFFAQTAALVDADNPALAQKLRQASPHWMRHTHATHALA 535

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            G +L +++  L H  +STT IY + +       M   +
Sbjct: 536 RGAELTTVRDNLRHASISTTSIYLHGDDVKRARQMSSAF 574


>gi|71910726|ref|YP_282276.1| site-specific tyrosine recombinase XerS [Streptococcus pyogenes
           MGAS5005]
 gi|71853508|gb|AAZ51531.1| recombinase [Streptococcus pyogenes MGAS5005]
          Length = 304

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 60/291 (20%), Positives = 108/291 (37%), Gaps = 39/291 (13%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRT----------QKIGDRSLKRSLSGIKSFLKYLKKRK 106
            I + T+  L+  ++ AF+   R           + +   ++ R+LS + S  KYL +  
Sbjct: 13  DIDLSTLEHLTKKDLEAFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEV 72

Query: 107 ITTESNILNMRNLKKSNSLP--------RALNEKQALTLVDNVLLHTSHETKWIDA---- 154
              +      RN+ K  S          RA N KQ L L D  L    +  K  +     
Sbjct: 73  ENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQKLFLGDETLAFLDYVDKEYEQKLSN 132

Query: 155 -----------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
                      R+ AI+ LL   G+R+SEA++L  +++  +   + +  KG K   V + 
Sbjct: 133 RAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDSVNVA 192

Query: 204 PSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLS 259
              +  +  Y  +         Q L  F          ++    ++ + +      +   
Sbjct: 193 GFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKI--R 250

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            T H LRH+ AT L         +   LGH     T +YT++ +    + +
Sbjct: 251 VTPHKLRHTLATRLYDATKSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNAL 301


>gi|167772803|ref|ZP_02444856.1| hypothetical protein ANACOL_04185 [Anaerotruncus colihominis DSM
           17241]
 gi|167665281|gb|EDS09411.1| hypothetical protein ANACOL_04185 [Anaerotruncus colihominis DSM
           17241]
          Length = 526

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 62/335 (18%), Positives = 121/335 (36%), Gaps = 56/335 (16%)

Query: 7   PEIVSFELLK-ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           PE+   E L    QN+     ++  +   T  +YE    Q       +   ++    + Q
Sbjct: 68  PEMPFGEWLDFWYQNY-----VKPQIRPTTQANYEAKIYQ-------HIIPELGKIPLNQ 115

Query: 66  LSYTEIRAFISKRRT-----------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
           L+  +++ F ++ +T           + + D  ++   +  +S L+   +  +   +  +
Sbjct: 116 LAQKDLQQFYARMKTAGRLIRTEQFGKGLSDSMVRGLHAACRSALEKAVQEGLIRTNPAV 175

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
             +   K     + L  ++    +         E          +  L    GLR  E L
Sbjct: 176 GCKLPPKRGREMQVLGREELQRFLIQAQAEGYFE----------LFLLDLCTGLRRGELL 225

Query: 175 SLTPQNIMDDQSTLRIQG---------------KGDKIRIVPLLPSVRKAILEYYDLCPF 219
           +L   ++      L +                     IR + L P V + +  Y +    
Sbjct: 226 ALQWDDLDFRTGALTVNKQVYEVKGRLQVSVPKTRASIRRLVLPPGVVEVLRAYRETV-- 283

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
           D       P+       P+ PG  +R ++ +    G       H LRH+FAT  L NG D
Sbjct: 284 DSRWMFPSPV---KEDVPMTPGAVRRRLQIILERAG-CKRIRFHDLRHTFATLSLENGMD 339

Query: 280 LRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           ++++ ++LGH   +TT  IYT+V      +   +I
Sbjct: 340 VKTLSAMLGHVSAATTLDIYTHVTGDMQSEAAAKI 374


>gi|160931503|ref|ZP_02078899.1| hypothetical protein CLOLEP_00336 [Clostridium leptum DSM 753]
 gi|160934558|ref|ZP_02081944.1| hypothetical protein CLOLEP_03431 [Clostridium leptum DSM 753]
 gi|311063707|ref|YP_003970432.1| DNA integration/recombination/inversion protein [Bifidobacterium
           bifidum PRL2010]
 gi|156866011|gb|EDO59383.1| hypothetical protein CLOLEP_03431 [Clostridium leptum DSM 753]
 gi|156869568|gb|EDO62940.1| hypothetical protein CLOLEP_00336 [Clostridium leptum DSM 753]
 gi|310866026|gb|ADP35395.1| DNA integration/recombination/inversion protein [Bifidobacterium
           bifidum PRL2010]
          Length = 397

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 52/294 (17%), Positives = 108/294 (36%), Gaps = 34/294 (11%)

Query: 48  IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI 107
             +    E+K+    I  +  ++ + +  + + + I  +++      +K+      +   
Sbjct: 108 RLMKLLEEDKLGGCPIDSVKLSDAKEWAIRMKEKGISYKTISNDKRSLKAAFYTAIQDDC 167

Query: 108 TTESNI-LNMRNLKKSNSLPRA-LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
             ++     +  + + ++ P+  L   Q     ++ L    ++  +    +  I+  L G
Sbjct: 168 IRKNPFDFQLNTVIEDDTEPKVPLTPAQE----ESFLSFAQNDKVYQKYYDELII--LLG 221

Query: 166 CGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKA 209
            GLRISE   LT  +I  +   + +                      IR +P+   V +A
Sbjct: 222 TGLRISELCGLTDTDINFENRIINVDHQLLRSAETGYYIETPKTKSGIRQIPMSEKVYEA 281

Query: 210 ILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLST 260
                        + I      LF    G P     +    R L +         LP   
Sbjct: 282 FNRVLKRRRGAKAVTIDGYSNFLFLNRDGYPKTATNYDGMFRGLAKKYNKYHEEALPKVM 341

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           T HTLRH+F T++ + G + +++Q I+GH  ++ T   Y +    +    M+ I
Sbjct: 342 TPHTLRHTFCTNMANAGMNPKALQYIMGHSNITMTLNYYAHATFDSAKAEMLRI 395


>gi|302387143|ref|YP_003822965.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302197771|gb|ADL05342.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 407

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 59/313 (18%), Positives = 117/313 (37%), Gaps = 23/313 (7%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
              L   +S +  +   ++  + + +R  +  T+Q       +F   L         +  
Sbjct: 99  NGKLQPFMSEDFRQAILSFTDHCK-KRNNADQTIQRRIRVIHKFFEHLTGS-----GVDA 152

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--K 120
              ++   I +F++         ++  + L  ++ F K L       +    ++  L   
Sbjct: 153 CNDITPQHISSFVTGLA--GYSKKTSDQYLESLRVFFKSLYFSGQRKDDLSKSVPTLYYP 210

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K + +P   +      L+                R+ A+++L+   GLR S+ L+L  +N
Sbjct: 211 KQDRIPSVWSANDIEQLL-----SVIDRGNPKGKRDYALIFLVTQLGLRTSDVLNLKLEN 265

Query: 181 IMDDQSTL-RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           I   +S +  +Q K      +P++  +  AI++Y        N   +  LF         
Sbjct: 266 INWSESRIEFVQQKTGISVNLPIVEDLGMAIIDYLKYGRPKSN---EPYLFLKHIQPFDR 322

Query: 240 PGVFQRYIRQLRRYLGLP----LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                  I Q     G+P         H+LRH+ A+ LL     L  I SILGH  + +T
Sbjct: 323 MKNGHYLITQYLVKAGIPLKTAKHHGLHSLRHTLASRLLEQDVPLEIISSILGHTTVEST 382

Query: 296 QIYTNVNSKNGGD 308
           + Y +++ +N   
Sbjct: 383 KPYLHIDIENLRK 395


>gi|229496223|ref|ZP_04389943.1| integrase [Porphyromonas endodontalis ATCC 35406]
 gi|229316801|gb|EEN82714.1| integrase [Porphyromonas endodontalis ATCC 35406]
          Length = 388

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 49/293 (16%), Positives = 101/293 (34%), Gaps = 24/293 (8%)

Query: 23  QNLEIER-GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           + L+ +R   S+ T  +  C  RQ   F+    EE I    +  ++      +    + +
Sbjct: 110 EELKAQRETKSEGTYSNNRCSDRQLNAFVRSRGEEDI---PLTAITIDFFDDYRFHLKKE 166

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                ++ R L  +   +     +     +    ++        PR L++      +   
Sbjct: 167 GYAPATINRHLCWLSRLMYRAVSQGTIRFNPFEEVKYETVERK-PRFLSKGDVAKFLAFP 225

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRI-QGKGDKI 197
           L     E          +       GL  ++  SL         + +  +R  + K +  
Sbjct: 226 LQDERAELS------RRMFLFSVFTGLAFADLQSLRASQIETNSEGKRYIRKARQKTEVE 279

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
            ++PL P   + +  Y        N      +F       ++ G    +++ +    G+ 
Sbjct: 280 SLIPLHPIAEQILSLY-----TKKNSKEDYKIFPDT----MSKGKLLTHLKAVGLACGVR 330

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              + H  RHSF T  L  G  + SI  ++GH  +++TQIY  +  +     M
Sbjct: 331 TPLSYHVGRHSFGTLTLEAGIPIESIAKMMGHSSIASTQIYAQITDQKIARDM 383


>gi|327314473|ref|YP_004329910.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|326946304|gb|AEA22189.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 409

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 63/287 (21%), Positives = 117/287 (40%), Gaps = 25/287 (8%)

Query: 32  SKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K T  +Y    R    F+   +  + I    + +    + ++F+     + +   + + 
Sbjct: 130 AKGTYPAYFYTRRTLAEFIQKKFHSKDIAFGQLTEQFIHDYQSFVVD--DKGLAIETSRH 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L+ IK   +   K     +    +    K+    P+AL+ +    + D  L+   H + 
Sbjct: 188 YLAIIKKVCRKAYKEGYADKCFFAHFSLPKQEEKTPKALSRESFEKIRD--LVIPEHCSS 245

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRI---QGKGDKIRIVPLLPSV 206
            I AR+  +       G   ++A+S+T  N+  DD+ +L +   + K +    V LLP  
Sbjct: 246 HILARD--LFLFACYTGTSYADAVSVTRDNLFTDDEGSLWLKYRRKKNELQACVKLLPEA 303

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            + I +Y        N + +  LF  +    L     +R ++ L     +    T H  R
Sbjct: 304 LELIEKY--------NDDTRPTLFPMLYHPNL-----RRLMKCLAVLADIKEDLTYHAGR 350

Query: 267 HSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           HSFA+ + L  G  + +I  +LGH  L TTQ Y  V  K   + M +
Sbjct: 351 HSFASLITLEAGVPIETICKMLGHSNLQTTQRYAKVTPKKLFEDMDK 397


>gi|323484551|ref|ZP_08089916.1| site-specific DNA tyrosine recombinase [Clostridium symbiosum
           WAL-14163]
 gi|323402129|gb|EGA94462.1| site-specific DNA tyrosine recombinase [Clostridium symbiosum
           WAL-14163]
          Length = 280

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 53/285 (18%), Positives = 112/285 (39%), Gaps = 40/285 (14%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +++ L I+   S  T++ Y+ D ++F+ FL             ++++   +  +     
Sbjct: 13  QFIRYL-IQEEKSSHTVEKYQRDLKKFVQFLRG-----------QEVTKDLVIEYKKSLS 60

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP----RALNEKQAL 135
            +     S+   L+ +  F+++    +         ++ +K    +     + L +++  
Sbjct: 61  DR-YAATSVNSMLASLNHFMQFAGWLEF-------KVKQIKLQRQVYCPEEKELTKEEYY 112

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            LV+   L               I+  +   G+RISE + +T  ++    +    +GK  
Sbjct: 113 RLVNTAKLMKKDRIG-------LIIQTICSTGIRISELIYITVDSVHTGVAYATCKGKS- 164

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
             R + L   +R  +++Y            Q P+F    GKP+N     + ++ L     
Sbjct: 165 --RQIFLPHKLRMLLMKYIRQNQIR-----QGPVFLTREGKPVNRSNVWKEMKALCASAR 217

Query: 256 -LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            L +    H LRH FA        D+  +  +LGH  ++TT+IY 
Sbjct: 218 VLAVKVFPHNLRHLFARTYYRMEKDISKLADLLGHSSINTTRIYI 262


>gi|307565760|ref|ZP_07628229.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345586|gb|EFN90954.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 431

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 104/278 (37%), Gaps = 15/278 (5%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           +    F+     + I+I TI +  + E R F+ KR    +   ++   L  +   +    
Sbjct: 136 KNLREFVEDKGLQDISISTITEDLFEEYRFFLKKR---GLKGTTINNYLCWLSRLMFRAV 192

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
            ++I   +   + +  K+   + R L + +   L    +  +  E          +    
Sbjct: 193 SKRIIRCNPFEHAKYEKEEKKI-RFLQKSEVAKLATMKMNDSEAELA------RLMFVFS 245

Query: 164 YGCGLRISEALSLTPQNIM---DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
              GL I++  +L   +I      +  +R  + K     +VPL P     I   ++    
Sbjct: 246 CLTGLAIADMETLQYGHIQTAAGGRKYIRKERQKTKVEFVVPLHPIAEAIIRHCWEEQEG 305

Query: 220 DLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
           +  L         +      +  V  + +  + +  G+    + H  RH+F T  LS G 
Sbjct: 306 NEELQTVKEKGDSLVFPRSCSRSVMGKNLCIVGKACGIRERLSYHMARHTFGTMSLSAGI 365

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            + SI  ++GH  +S+TQIY  V  +   + M  +  +
Sbjct: 366 PIESIAKMMGHASISSTQIYAQVTDRKISEDMDRLIAK 403


>gi|288573121|ref|ZP_06391478.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288568862|gb|EFC90419.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 319

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 51/316 (16%), Positives = 113/316 (35%), Gaps = 34/316 (10%)

Query: 6   LPEIVSFELLKER-------QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI 58
           +P ++S E  ++R         +L   +   G +  T+  Y      F            
Sbjct: 1   MPNVISIESWQDRPSPAQALDTFLTFKKAT-GAAPRTMTDYRKTVGAFFRDYEEAWNGPH 59

Query: 59  TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNM 116
           T++         + +++S    Q I   +    L  +++F ++  + ++  +       +
Sbjct: 60  TMRP-------SLVSWLS----QDIAPATYNLRLVYLRAFWRWAVEEELQPDSPDPFRGL 108

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           +  +K     R ++ +    L+            +   R+   +       +R  E L L
Sbjct: 109 KR-RKDRGKFRVVSLEDVKALL-----GGIPRGSYAGERDRCAVVFTLDVAIRPGEMLHL 162

Query: 177 TPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
            P ++     T+ I     K  + R +PL P     +  +        +    +P+F   
Sbjct: 163 LPGDLDLSGLTVTIPAHVAKTREARTLPLSPGTVDVLRAFL--RYRPSSWPPTVPVFASE 220

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            G+P++   +   I+   R     +  T + LRH+  T  L  G +   +Q ++GH    
Sbjct: 221 TGRPMDTTHWGHRIKNHARRA--DVDLTPYDLRHAACTLHLRAGMNTLVLQKLMGHTGPQ 278

Query: 294 TTQIYTNVNSKNGGDW 309
            T  YT+++  +  D 
Sbjct: 279 MTMRYTHLDIDDLRDQ 294


>gi|240146114|ref|ZP_04744715.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
 gi|257201767|gb|EEV00052.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
          Length = 269

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 109/294 (37%), Gaps = 35/294 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + + L  E  LS  T+ SY      F              +    +S   + A+      
Sbjct: 7   FEEYLRKE-NLSDNTITSYLWTANYF-------------TENYDSVSKDNLLAYKGYLME 52

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                +++   +  I  +L+YL+++++        ++ +K      +   E        N
Sbjct: 53  F-FKPKTVNLRIQAINKYLEYLEEQQL-------QLKTVKVQQ---KNFLENVISNADYN 101

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            L     + + I+     +++ L   G R+SE + +  ++I  +     +  KG K+R +
Sbjct: 102 FLKKQLKKDENIEW--YFVVWYLAATGARVSELIQIKIEHI--EIGYFDLYTKGGKLRRL 157

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
            +   ++K  LE+      +        LF    G  +      + ++      GL    
Sbjct: 158 YIPKKLKKETLEWL-----EKTHRSSGYLFLNRYGDRITTRGISQQLKNYAEKYGLDKKV 212

Query: 261 -TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              H+ RH +A + L    D+  +  ++GH  + TT+IY    +    + + +I
Sbjct: 213 VYPHSFRHRYAKNFLEKYNDIALLADLMGHESIETTRIYLRRTASEQQELVDKI 266


>gi|317012487|gb|ADU83095.1| integrase-recombinase protein [Helicobacter pylori Lithuania75]
          Length = 363

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 64/288 (22%), Positives = 125/288 (43%), Gaps = 18/288 (6%)

Query: 36  LQSYECDTRQFLIFL--AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
           + +Y     +F  +   A    E++   +++ +    +  F+S   T  +   + K    
Sbjct: 73  INTYALPLLKFHEYFSKARLITERLAFHSLKSIDEVLLAEFLS-VYTGGLSLATKKNYRI 131

Query: 94  GIKSFLKYLKKRK-------ITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLLH 144
            +     Y+ K+              + N+  + +   N LP  LN ++    +++  + 
Sbjct: 132 ALLGLFSYIDKQNQDENEKSYIYNITLKNISGVNQSAGNKLPTHLNNEELEKFLES--ID 189

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPL 202
               +  + ARN  ++ ++   G+R +EAL L  ++   +    T+ I+GKGDK R V L
Sbjct: 190 KIEMSAKVRARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVML 249

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT- 261
                +++L+ + +      +   L LF   +G  L      + + ++  + GL      
Sbjct: 250 KAFHIESLLKEWLIERVLYPVKNDL-LFCNQKGSALTQAYLYKQVERIINFAGLRREKNG 308

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           AH LRHSFAT L     DL  +Q  LGH  L+T++IYT+ + +   + 
Sbjct: 309 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLEEA 356


>gi|237713434|ref|ZP_04543915.1| mobilizable transposon [Bacteroides sp. D1]
 gi|262407221|ref|ZP_06083769.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229446416|gb|EEO52207.1| mobilizable transposon [Bacteroides sp. D1]
 gi|262354029|gb|EEZ03121.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 386

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 62/317 (19%), Positives = 112/317 (35%), Gaps = 44/317 (13%)

Query: 15  LKERQNWLQNLE---IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            KE   +L+       ER  +  +  ++    R  L +L  Y +EK T + I        
Sbjct: 86  FKEDTPFLEYYRKMVEERHKNPESDGNWGNW-RSCLRYLEIYCDEKTTFKDITPEFINGF 144

Query: 72  RAFI------SKRRT---------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           + F+      + +RT         Q +   S     + +++ +      +I   + +  +
Sbjct: 145 KDFLNNVEKDTHKRTGPRRERDVFQGLSQNSKVSYFNKLRACINQAYDERIIPVNPLRGI 204

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              K +      L  ++   L        +   ++   + + +   L   GLR S+   L
Sbjct: 205 EGFKAAEVKRDYLTLEEVKQL-------AATPCRYPILKRAFLFSCL--TGLRKSDIQKL 255

Query: 177 TPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
           T   +       RI   Q K      + +     K + E           N + P+F G 
Sbjct: 256 TWSEVQKFGDYTRIVFKQKKTGGQEYLDISSQAEKYLGE---------RGNPEDPVFTGF 306

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
                     QR          +  + T H  RH+FA  +L  G D+ ++  +LGH  L+
Sbjct: 307 TYGAWTSLELQR----WSMAANINKNLTFHCGRHTFAVLMLDLGADIYTVSKLLGHKELA 362

Query: 294 TTQIYTNVNSKNGGDWM 310
           TTQIY  V  KN  + +
Sbjct: 363 TTQIYAKVLDKNKQNAV 379


>gi|53714080|ref|YP_100072.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|253567394|ref|ZP_04844843.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|255009170|ref|ZP_05281296.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           3_1_12]
 gi|298483947|ref|ZP_07002117.1| tyrosine type site-specific recombinase [Bacteroides sp. D22]
 gi|313146917|ref|ZP_07809110.1| integrase [Bacteroides fragilis 3_1_12]
 gi|52216945|dbj|BAD49538.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|251943963|gb|EES84491.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|298269856|gb|EFI11447.1| tyrosine type site-specific recombinase [Bacteroides sp. D22]
 gi|313135684|gb|EFR53044.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 376

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 50/270 (18%), Positives = 101/270 (37%), Gaps = 32/270 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKR------RTQKIGDRSLKRSLSGIKSFLKYLK 103
           L  Y  E+ T   + Q+  T    +I         + + I   +           L    
Sbjct: 122 LKEYAGERFT---LNQIDLTFCHGYIDYMLTNYRPKGKPISASTRNTYYQIFNGALNAAV 178

Query: 104 KRKITTESNILNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
           + K   ++    M      K   S+   +  ++  +L+   + +   ++ ++ +      
Sbjct: 179 RAKRILKNPFNEMEKSEKPKMPESVRSYMTIEEVRSLIATPMQNEGVKSAYLFSC----- 233

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
                CGLRIS+ + L  +++  D    R+     K +    LP   +A+    +     
Sbjct: 234 ----FCGLRISDIIGLQWKDVFIDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPERGDKT 289

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
            + ++              P    + I+   +  G+    T HT RH+FAT +L+ G DL
Sbjct: 290 ADDHVFDL-----------PSGINQLIKPWAKAAGISKRFTFHTARHTFATMMLTLGADL 338

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            ++  +LGH  +  TQ+Y  + +K   D +
Sbjct: 339 YTVSKLLGHTSVKMTQVYAKIVNKKKDDAV 368


>gi|84517249|ref|ZP_01004604.1| Site-specific recombinase XerD-like [Loktanella vestfoldensis
           SKA53]
 gi|84508924|gb|EAQ05386.1| Site-specific recombinase XerD-like [Loktanella vestfoldensis
           SKA53]
          Length = 401

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 96/252 (38%), Gaps = 22/252 (8%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI----TTESNILNMR 117
            + ++S  ++               S+ R L  ++     L  R       TE+    +R
Sbjct: 140 HLDEISTEDVLNMQQAGLKAGAAPGSVNRRLILLRYMFN-LAWRDWKIAGVTENPTHGVR 198

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
            LK++N   R +  ++   L D V           +     I+  L   G R +E L  T
Sbjct: 199 LLKENNKKERYVRAEEMARLYDEVCGSQ-------NIMLKHIVAFLVLTGARRNEVLHAT 251

Query: 178 PQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
             +I       RI + K    R VPL       + +         +++    +F      
Sbjct: 252 WHDINMTTGKWRIPETKSGYARHVPLNDGAMAVLQQMQ-------DVSRSQYIFGNPNTG 304

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
                ++       RR  GLP     H LRH+FA+ L++NG  L ++Q +LGH ++ TTQ
Sbjct: 305 KPYVHIYY-AWDIARRRAGLP-DVRMHDLRHTFASLLVNNGSSLYAVQMLLGHTQIKTTQ 362

Query: 297 IYTNVNSKNGGD 308
            Y ++  +   D
Sbjct: 363 RYAHLTQETLLD 374


>gi|317181986|dbj|BAJ59770.1| integrase-recombinase protein [Helicobacter pylori F57]
          Length = 355

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 64/286 (22%), Positives = 125/286 (43%), Gaps = 21/286 (7%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y     +F  +      +KI++++++ +    +  F+S   T  +   + K     +
Sbjct: 72  INTYALPLLKFHEYT-----KKISLKSLKSIDEVLLAEFLS-VYTGGLSLATKKNYRIAL 125

Query: 96  KSFLKYLKKRK-------ITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLLHTS 146
                Y+ K+              + N+  + +   N LP  LN ++    +D   +   
Sbjct: 126 LGLFSYIDKQNQDENEKSYIYNITLKNISGVNQSAGNKLPTHLNNEELEKFLDG--IDKI 183

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLP 204
             +  +  RN  ++ ++   G+R +EAL L  ++   +    T+ I+GKGDK R V L  
Sbjct: 184 EMSAKVRTRNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLKA 243

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AH 263
              +++L+ + +      +   L LF   +G  L      + + ++  + GL      AH
Sbjct: 244 FHIESLLKEWLMERELYPVKNDL-LFCNQKGSALTQAYLYKQVERIINFAGLRREKNGAH 302

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            LRHSFAT L     DL  +Q  LGH  L+T++IYT+ + +   + 
Sbjct: 303 MLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 348


>gi|149200530|ref|ZP_01877541.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Lentisphaera araneosa HTCC2155]
 gi|149136379|gb|EDM24821.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Lentisphaera araneosa HTCC2155]
          Length = 400

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 62/344 (18%), Positives = 120/344 (34%), Gaps = 71/344 (20%)

Query: 18  RQNWLQNLE---IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           R+ W+  L     +   S  T   Y    R+FLI+        I           +IR +
Sbjct: 83  REAWILKLRGHLRQGKRSTRTEDCYVNWVRRFLIYNGKEQSWII----------EDIRIY 132

Query: 75  ISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN--ILNMRNLKKSNSLPRALNE 131
           I+     Q +   +  ++++ +  F KY     I  +    +  +   K  + LP   + 
Sbjct: 133 ITFIVSEQGVSVSTQNQAIAALSYFYKY-----ILEKDPGELPRILKAKSKHKLPAIFSH 187

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            +   + +            +      +  L+YG GLR  E   L  Q++   +  L I+
Sbjct: 188 AELKVIFEQ-----------LTGTELLVAKLMYGAGLRSGECYKLRMQDLDFKKKVLLIR 236

Query: 192 GKGDKIRIVPLLPS-------------------------VRKAILEYYDLCPFDLNLNIQ 226
            +   ++   L P                              + + Y+    +      
Sbjct: 237 DRLGVVKRETLFPESLFKELKVHIKSVKMVYSADQTIENAEVRLPDEYEAVEDEAKQWKW 296

Query: 227 LPLFRG-----------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
             LF             ++ +  +P   QR  +++ +   +       +LRHSFA H+L 
Sbjct: 297 FWLFPSAVLKIGSDKQSLKREHYHPWHLQRKFKEILKSTQIENQVNLDSLRHSFAVHMLE 356

Query: 276 NGGDLRSIQSILGHFRLSTTQIY---TNVNSKNGGDWMMEIYDQ 316
            G D+R++Q++LGH  + TT IY     V   +    + E+  +
Sbjct: 357 AGYDIRTVQTLLGHQDVKTTMIYSKLAKVGKVHPKSPLDEVLRK 400


>gi|116494901|ref|YP_806635.1| site-specific tyrosine recombinase XerS [Lactobacillus casei ATCC
           334]
 gi|116105051|gb|ABJ70193.1| tyrosine recombinase XerC subunit [Lactobacillus casei ATCC 334]
          Length = 370

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 144/362 (39%), Gaps = 48/362 (13%)

Query: 1   MEGNNLPEIVSFELLKERQNWL-QNLEIERGL--SKLTLQSYECDTRQFLIFL------A 51
           M   N  +++   +L    +++    + ++ +  +  TL  Y    ++FL +L      A
Sbjct: 1   MSTQNYSKLI-HTMLPALPDYIQDYYQSQKAIPIADSTLYQYLHFYQEFLNWLINSGVTA 59

Query: 52  FYTEEKITIQTIRQLSYTEIRAFISKR--------RTQKIGDRSLKRSLSGIKSFLKYLK 103
             + + + +  +  LS  + +AF++            +++  RS+   L GIK+  ++L 
Sbjct: 60  ASSPQTVPLTVLEHLSLRDAQAFMAYLLERPSKTHHNKRMTRRSVALRLVGIKALYRFLT 119

Query: 104 KR-------------------KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           +                    K+ T +   + RN K    L     + + L  +D     
Sbjct: 120 EESEPHADGEPYFYRNVWNKVKLKTHTETASYRNHKLQEMLFVDGEDAKFLQWLDQSYAQ 179

Query: 145 TSHETKWIDA-----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                          RN A++ LL+G G+R+SE +++  +++  D+ T+++  KG+    
Sbjct: 180 QLPAKPRRYFEATKVRNLAMIALLFGSGVRVSELVNMNLEDLNMDRHTVQVVRKGNFQDR 239

Query: 200 VPLLPSVRKAILEYYDLCPFDLNL-NIQLPLF---RGIRGKPLNPGVFQRYIRQLRRYLG 255
           V     +   +  Y       +       PLF    G +   +     + + ++     G
Sbjct: 240 VNFADWIDPYVQAYLTQRAAIIGYQKPTSPLFVTVVGQKINRIRQNTIEAFFKRYTTDYG 299

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
               +T H  RH+  T++ +   D++ +   LG    S T +Y N++ K+G + + E+ +
Sbjct: 300 --RPSTPHKARHTLGTNIYTVTKDVQQVADQLGQTTTSATDLYINLSDKSGKEALREVSE 357

Query: 316 QT 317
             
Sbjct: 358 TA 359


>gi|332673521|gb|AEE70338.1| tyrosine recombinase XerC [Helicobacter pylori 83]
          Length = 356

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 63/286 (22%), Positives = 125/286 (43%), Gaps = 21/286 (7%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y     +F  +      +KI++++++ +    +  F+S   T  +   + K     +
Sbjct: 73  INTYALPLLKFYEYT-----KKISLKSLKSIDEVLLAEFLS-VYTGGLSLATKKNYRIAL 126

Query: 96  KSFLKYLKKRK-------ITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLLHTS 146
                Y+ K+              + N+  + +   N LP  LN ++    ++   +   
Sbjct: 127 LGLFSYIDKQNQDENEKSYIYNITLKNISGVNQSAGNKLPTHLNNEELEKFLEG--IDKI 184

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLP 204
             +  +  RN  ++ ++   G+R +EAL L  ++   +    T+ I+GKGDK R V L  
Sbjct: 185 EMSAKVRTRNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLKA 244

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AH 263
              +++L+ + +      +   L LF   +G  L      + + ++  + GL      AH
Sbjct: 245 FHIESLLKEWLIERELYPVKNDL-LFCNQKGSALTQAYLYKQVERIINFAGLRREKNGAH 303

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            LRHSFAT L     DL  +Q  LGH  L+T++IYT+ + +   + 
Sbjct: 304 MLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 349


>gi|73669737|ref|YP_305752.1| site-specific recombinase [Methanosarcina barkeri str. Fusaro]
 gi|72396899|gb|AAZ71172.1| site-specific recombinase [Methanosarcina barkeri str. Fusaro]
          Length = 315

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 65/316 (20%), Positives = 115/316 (36%), Gaps = 41/316 (12%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N+L + ++ R  S  T+QSY+   R FL   +             ++S   +++F+   R
Sbjct: 23  NFLLDCQV-RNFSPRTIQSYKSCLRYFLSRHSI------------EISPEVLKSFLVHIR 69

Query: 80  TQKI-GDRSLKRSLSGIKSFLKYLKKRK----ITTESNILNMRNLKKSNSLPRAL-NEKQ 133
            +K     +++   + + SF  YL+       I  +     +R  K+     R L + +Q
Sbjct: 70  DEKNFAPSTVENYFAALSSFFDYLEYEGVQKNIVPQFRKRYLRYYKEQRHEERQLISLEQ 129

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-LRIQG 192
              L+D+        T+WI     A+       G+R  E + L  Q++   ++  +    
Sbjct: 130 MRALIDS--------TEWIGF--KAMFIFFAKTGIRRQELIDLDLQDLYLSKNYAILKPH 179

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
                RIV       + + E+               LF G++G  +N         Q   
Sbjct: 180 AKRSNRIVFFDNECSQVLQEWITWRQNKRPKVHSKALFLGVKGDRINRDTVYDATTQHAE 239

Query: 253 YLG-------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            LG       L    T H  RH F T +  +G     IQ + G  R     IY ++    
Sbjct: 240 RLGFHNPQGKLNEKFTPHCFRHFFTTWMRRSGCPRSIIQELRGDSRKEAIDIYDHITQAE 299

Query: 306 GGDWMMEIYDQTHPSI 321
               + E Y +  P +
Sbjct: 300 ----LKESYLKYVPQL 311


>gi|146300388|ref|YP_001194979.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146154806|gb|ABQ05660.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 419

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 59/312 (18%), Positives = 122/312 (39%), Gaps = 27/312 (8%)

Query: 9   IVSFELLKERQNWLQNLE--IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           +++ +  K ++++++ +     +  ++ + +S   +  + + FL  Y++ ++    I   
Sbjct: 118 LLAEQKEKAKEDFIRYIASVAAKRHARSS-KSIMINWERTIEFLKSYSKGRLVFSQIDSR 176

Query: 67  SYTEIRAFISKR-----RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
              + + F+        +   +   +  R  S  K+ LK        T      ++ + +
Sbjct: 177 MAEDFKLFLLAAPLGGGKKGILSRNTAARYFSIFKAALKQAFIDGYLTVDLSSKIKGIPE 236

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
             S    L  K+      NVL     E   +  + +A+   L   GLR S+   L  + I
Sbjct: 237 QESRREYLTIKEL-----NVLAEMPCEKDVL--KRAALFSAL--TGLRHSDIQKLRWKEI 287

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
             +    ++     K R V  +P   +A+    +       +   LP          +P 
Sbjct: 288 SLEDDMAKLHFTQKKTRGVEYMPISEQALQLCGEPRLPGQLVFEDLP----------DPS 337

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              R +++     G+  + T H  RH+FAT  LS+G D+ ++  +LGH  + TTQIY  V
Sbjct: 338 WISRPLKKWVESAGIKKNITFHCFRHTFATLQLSSGTDIYTVSKMLGHTNVKTTQIYAKV 397

Query: 302 NSKNGGDWMMEI 313
             +        I
Sbjct: 398 IDEKKNRASQAI 409


>gi|329117091|ref|ZP_08245808.1| site-specific tyrosine recombinase XerS [Streptococcus parauberis
           NCFD 2020]
 gi|326907496|gb|EGE54410.1| site-specific tyrosine recombinase XerS [Streptococcus parauberis
           NCFD 2020]
          Length = 356

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 58/326 (17%), Positives = 118/326 (36%), Gaps = 45/326 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  + ++F  +L             I + T+  L+  ++ AF+   R +   
Sbjct: 33  YSFTTLYEYLKEYKRFFEWLIDADISNVTKIADIDLSTLEHLTKKDMEAFVLYLRERPSL 92

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                   +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 93  NTYSTKSGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAS 152

Query: 120 KKSNSLPRALNEKQALTLVD------NVLLHTSHETKW--IDARNSAILYLLYGCGLRIS 171
           +  N   +     + +  ++        LL    ++ +     R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETMEFLEYVDNEYENLLSNRAKSSFRKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLF 230
           EA++L  +++      + +  KG K   V +    +  I  Y  +         Q L  F
Sbjct: 213 EAVNLDVKDLNLKMMVIEVTRKGGKRDSVNVAGFAKPYIENYLAIRKNRYKAEKQDLAFF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +  +   +    T H LRH+ AT L         +   L
Sbjct: 273 LTEYRGVPNRIDASSIEKMVAKYSQDFKI--RVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH     T +YT++ +    + + ++
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNALDKL 356


>gi|228990730|ref|ZP_04150695.1| Tn554-related, transposase A [Bacillus pseudomycoides DSM 12442]
 gi|228769256|gb|EEM17854.1| Tn554-related, transposase A [Bacillus pseudomycoides DSM 12442]
          Length = 379

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 58/349 (16%), Positives = 130/349 (37%), Gaps = 80/349 (22%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+ L++  G S  T ++Y    +Q+ ++L          +  R +   ++  F+   R
Sbjct: 32  KYLKYLDVT-GKSNNTQKTYCYALKQYFLYLQEIE------KNYRDIRLEDLVEFVGWLR 84

Query: 80  T--------------QKIGDRSLKRSLSGIKSFLKYLKKRKITTES-------------- 111
                           K  +R++  +++ + +F  YL + +                   
Sbjct: 85  NPYESSKVMSLRPVKAKKTERTVNLTVTAVTNFYDYLYRNEELPRDMKEKLIRQVFTGGR 144

Query: 112 ---------------NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
                          ++ N+  +K+     + L+++Q   ++              + R+
Sbjct: 145 TRYKSFLHHINQDKLSMRNVLKVKEPRKRVQTLSKEQVKQVLAAT----------TNIRD 194

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQ-----------GKGDKIRIVPLLP 204
           + ++ LL+  GLRI E LSL  ++     Q   RI+                 R + +  
Sbjct: 195 TFLIQLLFETGLRIGETLSLFLEDFKFSHQKGHRIRLTDRGELENGAKLKTGEREIFVSQ 254

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRG----KPLNPGVFQRYIRQLRRYLGLPLST 260
            +     +Y      +L++     +F  +RG    +P+  G  +   ++LR+  G+    
Sbjct: 255 DLMDLYDDYMYDVIDELDVETNF-VFVKLRGKNMGRPMTYGDVEALFKRLRQKTGID--V 311

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGD 308
             H  RH+ AT       D++ +Q  LGH ++ TT  +Y + + ++   
Sbjct: 312 HPHLFRHTHATMYYQETKDIKQVQERLGHSQIQTTMNLYLHPSDEDIRK 360


>gi|256840382|ref|ZP_05545890.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
 gi|256737654|gb|EEU50980.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
          Length = 376

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 50/270 (18%), Positives = 101/270 (37%), Gaps = 32/270 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKR------RTQKIGDRSLKRSLSGIKSFLKYLK 103
           L  Y  E+ T   + Q+  T    +I         + + I   +           L    
Sbjct: 122 LKEYAGERFT---LNQIDLTFCHGYIDYMLTNYHPKGKPISASTRNTYYQIFNGALNAAV 178

Query: 104 KRKITTESNILNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
           + K   ++    M      K   S+   +  ++  +L+   + +   ++ ++ +      
Sbjct: 179 RAKRILKNPFNEMEKSEKPKMPESVRSYMTIEEVRSLIATPMQNEGVKSAYLFSC----- 233

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
                CGLRIS+ + L  +++  D    R+     K +    LP   +A+    +     
Sbjct: 234 ----FCGLRISDIIGLQWKDVFIDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPERGDKT 289

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
            + ++              P    + I+   +  G+    T HT RH+FAT +L+ G DL
Sbjct: 290 ADDHVFDL-----------PSGINQLIKPWAKAAGISKRFTFHTARHTFATMMLTLGADL 338

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            ++  +LGH  +  TQ+Y  + +K   D +
Sbjct: 339 YTVSKLLGHTSVKMTQVYAKIVNKKKDDAV 368


>gi|254931487|ref|ZP_05264846.1| transposase B [Listeria monocytogenes HPB2262]
 gi|293583039|gb|EFF95071.1| transposase B [Listeria monocytogenes HPB2262]
          Length = 637

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 106/277 (38%), Gaps = 20/277 (7%)

Query: 45  QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK 104
           +   F  F  +    I+ I QL+  E+  + +    + +   ++   +S +  F   +++
Sbjct: 247 RLKEFFNFINKNCKGIRRIHQLTRNEVEQYFNYINLKGLKSSTVTGRISTLDVFFTTIQR 306

Query: 105 RKITTESNILNM---RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
                  + + +      K   +LPR ++E        ++L   + +   ++   + ++ 
Sbjct: 307 YDWKDTPSKILIFQEDYPKVPKALPRYIDE--------HILEQLNGKLDKLEPYIATMIM 358

Query: 162 LLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +L  CG+RISE  +L   +++ D+     L+      K   +  +     A++   +   
Sbjct: 359 VLQECGMRISELCTLKKGSVITDKEGDCFLKYYQWKMKKEHIIPISKEIAALILVQEQRV 418

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP------LSTTAHTLRHSFATH 272
            D   +  + +F    G PL    F+  + +L     +           AH  RH+  T 
Sbjct: 419 ADELDDGCVYVFPRKDGSPLKQDTFRVKLNELAYEEKITDSKGEIFRFHAHAFRHTVGTR 478

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           +++NG     +Q  LGH     T  Y ++  +     
Sbjct: 479 MINNGVPQHIVQKFLGHESPEMTARYAHIFDETLKKE 515


>gi|298244075|ref|ZP_06967881.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297551556|gb|EFH85421.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 379

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 56/315 (17%), Positives = 109/315 (34%), Gaps = 43/315 (13%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           K TL++      ++      +   ++    ++ L    I+   +++  + +   ++    
Sbjct: 69  KHTLRA--RSYERYEEIARLHIIPRLGKVKLQDLKPQHIQVLQAEKLEEGLSASTVGIIH 126

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +   L    K  +  ++    +   ++     + L   Q+  L++ V  H        
Sbjct: 127 QVLHKSLDDAVKLGLLGKNVCKAVPPSREKRKDVKPLTPDQSRKLLNAVKGHPLE----- 181

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--------------------- 191
                A+  L    G+R  E  +L   +I  +   L ++                     
Sbjct: 182 -----ALFILALTTGMRRGELFALKWNDIDLEHGVLYVRRTLSRVPTKVRGENQDVLVEA 236

Query: 192 --GKGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                   R + L     +A++E+                    +F    G  L+P    
Sbjct: 237 ETKTQRSRRSIVLTLLAVEALIEHRLKQDEQHHIAGDAWQDNDYVFCAHDGTYLSPNHVS 296

Query: 245 RY-IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVN 302
            Y ++QL +  GLP     H LRH  AT LLS     + +Q ILGH  +STT  IY++V 
Sbjct: 297 SYQLKQLLKAAGLP-DIRFHDLRHGAATLLLSLQVHPKVVQEILGHSDISTTMNIYSHVL 355

Query: 303 SKNGGDWMMEIYDQT 317
                D M +++   
Sbjct: 356 PSMQADAMKQLHSAF 370


>gi|217032477|ref|ZP_03437969.1| hypothetical protein HPB128_156g7 [Helicobacter pylori B128]
 gi|298736373|ref|YP_003728899.1| XerCD family integrase/recombinase [Helicobacter pylori B8]
 gi|216945823|gb|EEC24444.1| hypothetical protein HPB128_156g7 [Helicobacter pylori B128]
 gi|298355563|emb|CBI66435.1| integrase-recombinase protein (XerCD family) [Helicobacter pylori
           B8]
          Length = 355

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 63/286 (22%), Positives = 127/286 (44%), Gaps = 21/286 (7%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y     +F  +      +K+++++++ +    +  F+S   T  +   + K     +
Sbjct: 72  INTYALPLLKFYEYA-----QKLSLKSLKSIDEVMLAEFLS-IYTGGLSLATKKNYRIAL 125

Query: 96  KSFLKYLKKRK-------ITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLLHTS 146
                Y+ K+              + N+  + +   N LP  LN ++    +++  +   
Sbjct: 126 LGLFSYIDKQNQDENEKSYIYNITLKNISGVNQSAGNKLPTHLNNEELEKFLES--IDKI 183

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLP 204
             +  + ARN  ++ ++   G+R +EAL L  ++   +    T+ I+GKGDK R V L  
Sbjct: 184 EMSAKVRARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLKA 243

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AH 263
              +++L+ + +      +   L LF   +G  L      + + ++  + GL      AH
Sbjct: 244 FHIESLLKEWLIERELYPVKNDL-LFCNQKGSALTQAYLYKQVERIINFAGLRREKNGAH 302

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            LRHSFAT L     DL  +Q  LGH  L+T++IYT+ + +   + 
Sbjct: 303 MLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLKEA 348


>gi|298373373|ref|ZP_06983362.1| integrase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274425|gb|EFI15977.1| integrase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 431

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 60/294 (20%), Positives = 114/294 (38%), Gaps = 20/294 (6%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSF 98
           Y  D R    F+     + I I TI +  + E R F+ KR    +   ++  +L  +   
Sbjct: 132 YYSD-RNLREFVKDKGLQDIPISTITESLFEEYRFFLKKR---GLKASTVNTNLCWLSRL 187

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           +      +I   +   N    K+   + R L +   + L+   +     E          
Sbjct: 188 MFRAVSSRIIRCNPFENAEYEKEEKKI-RFLQKGDVMKLMAMRMNDREAELA------RL 240

Query: 159 ILYLLYGCGLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
           +       G+ I++  +L  ++I    D Q  +R + +  K+  V  L  + +AI+ YY 
Sbjct: 241 MFVFSCFTGMAIADMENLEYRHIQTAADGQRYIRKERQKTKVEFVVPLHPIAEAIINYYR 300

Query: 216 --LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
             L   +    ++      +     +  V  + +  + +  G+    + H  RH+F T  
Sbjct: 301 KELAGNEEQQAVKEKGDSLVFQPHCSRSVMGKNLSIVGKACGIRQRLSYHVARHTFGTMS 360

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
           LS G  + SI  ++GH  +S+TQIY  V        M  +  +     + KDK+
Sbjct: 361 LSAGIPIESIAKMMGHASISSTQIYAQVTDNKISKDMDRLIAK----QSAKDKE 410


>gi|188527478|ref|YP_001910165.1| integrase-recombinase protein [Helicobacter pylori Shi470]
 gi|188143718|gb|ACD48135.1| integrase-recombinase protein [Helicobacter pylori Shi470]
          Length = 356

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 64/286 (22%), Positives = 126/286 (44%), Gaps = 21/286 (7%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y     +F  +      +KI++++++ +    +  F+S   T  +   + K     +
Sbjct: 73  INTYALPLLKFHEYT-----KKISLKSLKSIDEVLLAEFLS-VYTGGLSLATKKNYRIAL 126

Query: 96  KSFLKYLKKRK-------ITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLLHTS 146
                Y+ K+              + N+  + +   N LP  LN ++    ++   +   
Sbjct: 127 LGLFSYIDKQNQDENEKSYIYNITLKNISGVNQSAGNKLPTHLNNEELEKFLEG--IDKI 184

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLP 204
             +  + ARN  ++ ++   G+R +EAL L  ++   +    T+ I+GKGDK R V L  
Sbjct: 185 EMSAKVRARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLKA 244

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AH 263
              +++L+ + +      +   L LF   +G  L      + + ++  + GL      AH
Sbjct: 245 FHIESLLKEWLMERELYPVKNDL-LFCNQKGSALTQAYLYKQVERIINFAGLRREKNGAH 303

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            LRHSFAT L     DL  +Q  LGH  L+T++IYT+ + +   + 
Sbjct: 304 MLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 349


>gi|317180442|dbj|BAJ58228.1| integrase-recombinase protein [Helicobacter pylori F32]
          Length = 355

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 64/286 (22%), Positives = 126/286 (44%), Gaps = 21/286 (7%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y     +F  +      +KI++++++ +    +  F+S   T  +   + K     +
Sbjct: 72  INTYALPLLKFHEYT-----KKISLKSLKSIDEVLLAEFLS-VYTGGLSLATKKNYRIAL 125

Query: 96  KSFLKYLKKRK-------ITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLLHTS 146
                Y+ K+              + N+  + +   N LP  LN ++    ++   +   
Sbjct: 126 LGLFSYIDKQNQDENEKSYIYNITLKNISGVNQSAGNKLPTHLNNEELEKFLEG--IDKI 183

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLP 204
             +  + ARN  ++ ++   G+R +EAL L  ++   +    T+ I+GKGDK R V L  
Sbjct: 184 EMSAKVRARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLKA 243

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AH 263
              +++L+ + +      +   L LF   +G  L      + + ++  + GL      AH
Sbjct: 244 FHIESLLKEWLIERELYPVKNDL-LFCNQKGDALTQAYLYKQVERIINFAGLRREKNGAH 302

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            LRHSFAT L     DL  +Q  LGH  L+T++IYT+ + +   + 
Sbjct: 303 MLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 348


>gi|315608518|ref|ZP_07883504.1| integrase [Prevotella buccae ATCC 33574]
 gi|315249790|gb|EFU29793.1| integrase [Prevotella buccae ATCC 33574]
          Length = 447

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 67/319 (21%), Positives = 130/319 (40%), Gaps = 31/319 (9%)

Query: 14  LLKERQNWL----QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLS 67
           LL+    +L    + + I+R L    L++Y+      L  L  Y ++K  +  I   QL 
Sbjct: 151 LLESFGEYLTQTKERIGIDRALKTFELRTYQ------LSLLREYVQKKHKVSDIPLSQLD 204

Query: 68  YTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
              I  F       +++   S+  +LS +++ ++   K+ +      L+    K+    P
Sbjct: 205 KAFIEGFEYYLTIDRRLKRSSISSALSTLQTIVRMAVKKGVLDFYPFLDY-GYKRPKGEP 263

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R++ +++   ++D   L    E   I      +       GL IS+  +L  +NI+ ++ 
Sbjct: 264 RSITKEELERIID---LEIEWENYRIV---RDLFVFSCFSGLAISDVRNLREENIVLEEG 317

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            L I+G+  K +    +  +  A                 +P             +    
Sbjct: 318 ELCIKGRRIKTKTPYRVQVLPPAWAIMERYRGKRAGFVFDVP----------TTDIILNG 367

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +  ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQ+Y  V+S+ 
Sbjct: 368 MHYIQRNIGMESPLTFHMARHTFASLITLSAGVPIETVSRMLGHTSLRTTQVYAAVSSER 427

Query: 306 GGDWMMEIYDQTHPSITQK 324
               M  I  +   + T K
Sbjct: 428 IHRDMQAIQQRIQDTFTLK 446


>gi|293371342|ref|ZP_06617779.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|294645314|ref|ZP_06723030.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294808774|ref|ZP_06767507.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|292633702|gb|EFF52257.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292639393|gb|EFF57695.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294444071|gb|EFG12805.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 376

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 50/272 (18%), Positives = 101/272 (37%), Gaps = 32/272 (11%)

Query: 48  IFLAFYTEEKITIQTIRQLSYTEIRAFISKR------RTQKIGDRSLKRSLSGIKSFLKY 101
             L  Y  E+ T   + Q+  T    +I         + + I   +           L  
Sbjct: 120 DILKEYAGERFT---LNQIDLTFCHGYIDYMLTNYRPKGKPISASTRNTYYQIFNGALNA 176

Query: 102 LKKRKITTESNILNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
             + K   ++    M      K   S+   +  ++  +L+   + +   ++ ++ +    
Sbjct: 177 AVRAKRILKNPFNEMEKSEKPKMPESVRSYMTIEEVRSLIATPMQNEGVKSAYLFSC--- 233

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
                  CGLRIS+ + L  +++  D    R+     K +    LP   +A+    +   
Sbjct: 234 ------FCGLRISDIIGLQWKDVFIDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPERGD 287

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
              + ++              P    + I+   +  G+    T HT RH+FAT +L+ G 
Sbjct: 288 KTADDHVFDL-----------PSGINQLIKPWAKAAGISKRFTFHTARHTFATMMLTLGA 336

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           DL ++  +LGH  +  TQ+Y  + +K   D +
Sbjct: 337 DLYTVSKLLGHTSVKMTQVYAKIVNKKKDDAV 368


>gi|323485587|ref|ZP_08090931.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
 gi|323401105|gb|EGA93459.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
          Length = 320

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 50/300 (16%), Positives = 118/300 (39%), Gaps = 37/300 (12%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++   L  +  +S+ T+  Y    RQF                  +++Y+ ++ +   
Sbjct: 55  IEDYRLYLSAQ-NMSENTIHVYAYAIRQFFALY-------------HEITYSNLKLYKVF 100

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLKKSNSLPRALNEKQALT 136
              +    +++   +  + S++++ K       +   + M  ++  N L   ++E     
Sbjct: 101 LL-EHYKPQTVNLRIRALNSYIEFKKL------NPGKIPMVRIQHKNYLDNVISEADYEY 153

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L + +L                I+  +   G R+SE +    ++I      +    KG+K
Sbjct: 154 LKNCLLRDEK-------YLYYFIIRFMAATGARVSEVIQFEAEDIFTGYKDIY--SKGNK 204

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +R + +  +++K  + +      +     +  +F    G P+ PG  +  ++ +    G+
Sbjct: 205 LRRIYVPKALQKDAIAWLKAIRQE-----RGFVFLNRYGNPITPGGIRGQLKNMALAYGM 259

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                  H+ RH FA   +   GD+  +  +LGH  L TT+IY   +S    + + ++ D
Sbjct: 260 NPEVVHPHSFRHRFAKSFIEKCGDISLLSDLLGHKNLETTRIYLRRSSSEQYEIINKVVD 319


>gi|317177489|dbj|BAJ55278.1| integrase-recombinase protein [Helicobacter pylori F16]
 gi|317177493|dbj|BAJ55282.1| integrase-recombinase protein [Helicobacter pylori F16]
          Length = 355

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 64/286 (22%), Positives = 127/286 (44%), Gaps = 21/286 (7%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y     +F  +      +KI++++++ +    +  F+S   T  +   + K     +
Sbjct: 72  INTYALPLLKFHEYT-----KKISLKSLKSIDEVLLAEFLS-VYTGGLSLATKKNYRIAL 125

Query: 96  KSFLKYLKKRK-------ITTESNILNMRNLKKSN--SLPRALNEKQALTLVDNVLLHTS 146
                Y+ K+              + N+  + +S    LP  LN ++    +++  +   
Sbjct: 126 LGLFSYIDKQNQDENEKSYIYNITLKNISGVNQSAGSKLPTHLNNEELEKFLES--IDKI 183

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLP 204
             +  + ARN  ++ ++   G+R +EAL L  ++   +    T+ I+GKGDK R V L  
Sbjct: 184 EMSAKVHARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLKA 243

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AH 263
              +++L+ + +      +   L LF   +G  L      + + ++  + GL      AH
Sbjct: 244 FHIESLLKEWLMERELYPVKNDL-LFCNQKGSALTQAYLYKQVERIINFAGLRREKNGAH 302

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            LRHSFAT L     DL  +Q  LGH  L+T++IYT+ + +   + 
Sbjct: 303 MLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 348


>gi|170076521|ref|YP_001733160.1| integrase/recombinase [Synechococcus sp. PCC 7002]
 gi|170079512|ref|YP_001736147.1| integrase/recombinase [Synechococcus sp. PCC 7002]
 gi|169887181|gb|ACB00892.1| integrase/recombinase [Synechococcus sp. PCC 7002]
 gi|169887383|gb|ACB01091.1| integrase/recombinase [Synechococcus sp. PCC 7002]
          Length = 289

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 55/282 (19%), Positives = 113/282 (40%), Gaps = 33/282 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
             S  T ++Y    R F+  +A         + + Q++  ++         Q     + +
Sbjct: 31  QKSSATQKTYFYIVRNFMAAIA---------KPLNQITLDDLLD--WLDSLQWQSQNTRR 79

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNEKQALTLVDNVLLHTSHE 148
             ++ I+S   +       T +    ++  K+++  + R + + +   +  N        
Sbjct: 80  NKIAVIRSLFGFCHATGYITLNPAKLLQQPKENDCRIERIITKPKVQAMAMNADT----- 134

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPS 205
                 RN  I+  LY  G+R+SE +++   +     D+   L++ GKGDK+R + +   
Sbjct: 135 -----LRNELIIKTLYLLGVRVSELINIRWDDFIQTDDNGLKLKVMGKGDKVRFIVVPTG 189

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           +   +    +   +  +        +G  G  L+     R ++     +G+    + H L
Sbjct: 190 LWDELEALRNDSAYVFSSR------KGNNGSKLSRIQVYRVVKANGDRVGVQ--VSPHFL 241

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           RHS ATH L NG DL  +   LGH  ++ T  Y + +  +G 
Sbjct: 242 RHSHATHSLKNGCDLHLLSESLGHGNIAITSRYLHASGDDGS 283


>gi|126454019|ref|YP_001068113.1| integrase/recombinase [Burkholderia pseudomallei 1106a]
 gi|242316537|ref|ZP_04815553.1| putative integrase/recombinase XerD [Burkholderia pseudomallei
           1106b]
 gi|126227661|gb|ABN91201.1| integrase/recombinase [Burkholderia pseudomallei 1106a]
 gi|242139776|gb|EES26178.1| putative integrase/recombinase XerD [Burkholderia pseudomallei
           1106b]
          Length = 310

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 113/276 (40%), Gaps = 22/276 (7%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T ++Y      FL + A        + +I  +    + +++ + +T+     ++K+ L
Sbjct: 28  PHTRRAYARAASDFLTWCA-----DAGVSSITAVQPLHVASWV-ELQTRTHAASTVKQRL 81

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSL---PRALNEKQALTLVDNVLLHTSHET 149
           + I+    +L   ++   ++  ++R+   +      P  L+  +A  L+D++ + T    
Sbjct: 82  AAIRHLFDWLVTGQVVPVNSAASVRSPSHTVRTCATP-VLDPAEARQLLDSIDVSTP--- 137

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVR 207
             I  R+ A++ L+     RI  AL++   ++   Q    +R++ KGDK   +P   ++ 
Sbjct: 138 --IGLRDRALIALMVFSFARIGAALAMRVDDVYVQQRRLWIRLREKGDKAHAMPCHHTLE 195

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-----YIRQLRRYLGLPLSTTA 262
            A+  Y D      +    L          L+     +      +R+     G+     +
Sbjct: 196 MALRAYLDGTGIVFDPKGALFRTIARGTGQLSETTLAQANAYVMVRRRAAAAGIATKIGS 255

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           H LR +  T  L NGG L +  +I  H    +TQ Y
Sbjct: 256 HALRATGITTYLRNGGTLENAAAIANHVSTRSTQRY 291


>gi|108563083|ref|YP_627399.1| integrase-recombinase protein [Helicobacter pylori HPAG1]
 gi|107836856|gb|ABF84725.1| integrase-recombinase protein [Helicobacter pylori HPAG1]
          Length = 356

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 63/286 (22%), Positives = 125/286 (43%), Gaps = 21/286 (7%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y     +F  +      +K+++++++ +    +  F+S   T  +   + K     +
Sbjct: 73  INTYALPLLKFHEYA-----QKLSLKSLKSIDEVMLAEFLS-VYTGGLSLATKKNYRIAL 126

Query: 96  KSFLKYLKKRK-------ITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLLHTS 146
                Y+ K+              + N+  + +   N LP  LN ++    ++   +   
Sbjct: 127 LGLFSYIDKQNQDENEKSYIYNITLKNISGVNQSAGNKLPTHLNNEELEKFLEG--IDKI 184

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLP 204
             +  + ARN  ++ ++   G+R +EAL L  ++   +    T+ I+GKGDK R V L  
Sbjct: 185 EMSAKVRARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLKA 244

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AH 263
              +++L+ +        +   L LF   +G  L      + + ++  + GL      AH
Sbjct: 245 FHIESLLKEWLTERELYPVKNDL-LFCNQKGSALTQAYLYKQVERIINFAGLRREKNGAH 303

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            LRHSFAT L     DL  +Q  LGH  L+T++IYT+ + +   + 
Sbjct: 304 MLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 349


>gi|270269254|gb|ACZ66246.1| Tn554-related, transposase A [Staphylococcus aureus]
          Length = 370

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 132/352 (37%), Gaps = 71/352 (20%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI---- 75
            +L+ L+  +  S  T ++Y    ++F ++L     +KI  + +   ++ +   ++    
Sbjct: 29  RYLKYLDSVK-KSLNTKKTYAYALKKFFVYLES---KKICYKEVSFDNFVDFIRWMKTPF 84

Query: 76  -------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES----------------- 111
                    R+ + +  +++  +++ + +F  YL + K    +                 
Sbjct: 85  EYENVLSYHRKGKSVSPKTINLTMTVVSNFYDYLYRSKKLDVNFYDFMHMESKYPKKYKS 144

Query: 112 ----------NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
                      + N+  +K+       L   +   L++          K  + R+  ++ 
Sbjct: 145 FMHHINKDYRTLKNILKVKEPKKKIEVLTNAEVKKLLE----------KANNIRDKFLIQ 194

Query: 162 LLYGCGLRISEALSLTPQNIMDD-QSTLRIQGKGDK----------IRIVPLLPSVRKAI 210
           LLY  GLRI E LSL   +I  D +   +I  K              R + +  S+    
Sbjct: 195 LLYETGLRIGEVLSLRIDDIKFDFRKGHQIVLKNRFNDNGTYLKTGERKIFISQSLIDLY 254

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            +Y      +L++     LF  I+G+     +N        ++L+    +  +   H  R
Sbjct: 255 DDYVYEIIDELSI-CSDYLFVKIKGRNVGEAMNYSDIYSLFKRLKHKTSI--NVHPHLFR 311

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQT 317
           H+ AT   +   D++ +Q  LGH  + TT  +Y +   ++  +   ++  Q 
Sbjct: 312 HTHATVFYNETKDIKQVQERLGHSNIQTTINLYVHPTEEDIREDWNKVKHQF 363


>gi|45358035|ref|NP_987592.1| integrase/recombinase [Methanococcus maripaludis S2]
 gi|44920792|emb|CAF30028.1| Probable integrase/recombinase [Methanococcus maripaludis S2]
          Length = 328

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 56/312 (17%), Positives = 117/312 (37%), Gaps = 30/312 (9%)

Query: 20  NWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
            W+     ER   G+ + T+     D  +  +FL F  +     +   +L  T+   F +
Sbjct: 25  KWISVFREEREFDGIKENTIIG---DLTKLGVFLEFAQQRL--EKEPDELYKTDFIKFFN 79

Query: 77  KR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKIT----TESNILNMRNLKKSNSLPRALNE 131
              + +KI   +  R  + +K F +  K           +      + +       A+ E
Sbjct: 80  YLEKERKISKNTQNRYFNLLKVFYRAFKLDNFMDFRDESNERKRFSSSRIEVKHYDAITE 139

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           +    ++  +  + S        R+  ++ +L+  G R+SE L+L  ++   +    R++
Sbjct: 140 QDLNLVIAKIFENQSSTK----IRDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLR 195

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN--------PGVF 243
                     +  S    +L+   L  ++     +  LF+    + L            F
Sbjct: 196 NTKSHEERKVVCSSDTLELLK--CLASYNFKKEPKDYLFQSTNQENLGKIADRNQITRTF 253

Query: 244 QRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            R + +L+    +        H+LRH  A  LL+ G  +  ++ ILGH  L TT  Y++ 
Sbjct: 254 GRAVDKLKEEEKIQQNKRYVVHSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSH- 312

Query: 302 NSKNGGDWMMEI 313
           + +     + +I
Sbjct: 313 SRQRKEQMLQDI 324


>gi|301596538|ref|ZP_07241546.1| IntI1 integrase [Acinetobacter baumannii AB059]
          Length = 200

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 75/171 (43%), Gaps = 37/171 (21%)

Query: 168 LRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILE-------------- 212
           +RISE L L  +++  D  T+ ++ GKG K R + L  S+  ++ E              
Sbjct: 1   MRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQA 60

Query: 213 ----------------------YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
                                 +     F  + +   P    +R   +    FQR  ++ 
Sbjct: 61  EGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRA 120

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 121 VEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 171


>gi|77734435|emb|CAJ26219.1| integerase-recombinase [Thermotoga sp. RQ7]
          Length = 190

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 90/210 (42%), Gaps = 30/210 (14%)

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           K    + +  L  +K++L +   R +   E    N     +   LP+A+   +   +++ 
Sbjct: 9   KNAPATQRNKLVVVKNYLNWRADRGLLNXEERFWNEAEPPRHTVLPKAIELDEVRRIIEA 68

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQGKGDKIRI 199
                       +    AI  +L   G+R+SE ++L+  +I  ++ + +RI+GKG+K RI
Sbjct: 69  CD----------NXLYRAIFKVLANTGMRVSEIVNLSVHDISVNETARIRIKGKGNKERI 118

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           + +   + + ++                    G   K  +    QR +++  R  G+   
Sbjct: 119 INVSKELVEELMN------------------SGFFEKKPSVRSIQRAVKRYARKAGIKKK 160

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
            T H  RHSFA  L+  G  L  IQ++LGH
Sbjct: 161 VTPHIFRHSFAVALIERGVPLNKIQALLGH 190


>gi|189463338|ref|ZP_03012123.1| hypothetical protein BACCOP_04055 [Bacteroides coprocola DSM 17136]
 gi|189429957|gb|EDU98941.1| hypothetical protein BACCOP_04055 [Bacteroides coprocola DSM 17136]
          Length = 285

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 106/287 (36%), Gaps = 34/287 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            L+K T+ SY    + FL                 +++   + A+      +    +++ 
Sbjct: 31  NLAKNTVTSYVWTVQYFLNHYG-------------EVNKKNLLAYKGYL-VENFKPQTVN 76

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             L GI  FL++ K+ K+        ++ +K        L  +  ++  D   L    + 
Sbjct: 77  LRLQGINKFLEFTKQEKL-------KVKFVKVQQK--NFL--ENVISDADYKFLKARLKA 125

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              +     I++ +   G R+SE L +  ++I      L +  KG KIR + +  ++R  
Sbjct: 126 DGYEEW-YFIVWFMAATGARVSELLHIKAEHI--KVGYLDLYSKGGKIRRLYIPKNLRTE 182

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHS 268
             ++               +F    G+ +        ++      G+       H+ RH 
Sbjct: 183 AEKWLKSQGL-----TSGYIFLNRFGQRITTRGIASQLKHFAEKYGMNKEVVYPHSFRHR 237

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           FA + L    DL  +  ++GH  + TT+IY    +      + ++ +
Sbjct: 238 FAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDKVVN 284


>gi|77734441|emb|CAJ26227.1| integerase-recombinase [Thermotoga naphthophila RKU-10]
          Length = 190

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 30/210 (14%)

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           K    + +  L  +K++L +   R +   E    N     +   LP+A+   +   +++ 
Sbjct: 9   KNTPATQRNKLVVVKNYLNWKADRGLLNIEERFWNEAEPPRHTVLPKAIELDEVRRIIEA 68

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQGKGDKIRI 199
                       ++   AI  +L   G+R+SE ++L+  +I  ++ + +RI+GKG+K RI
Sbjct: 69  CD----------NSLYRAIFKVLANTGMRVSEIVNLSVHDISVNETARIRIKGKGNKERI 118

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           + +   + + ++                    G   K  +    QR +++  R  G+   
Sbjct: 119 INISKELVEELMN------------------SGFFEKKPSVRSIQRAVKRYARKAGIKKK 160

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
            T H  RHSFA  L+  G  L  IQ++LGH
Sbjct: 161 VTPHIFRHSFAVALIERGVPLNKIQALLGH 190


>gi|315586648|gb|ADU41029.1| tyrosine recombinase XerC [Helicobacter pylori 35A]
          Length = 355

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 64/286 (22%), Positives = 126/286 (44%), Gaps = 21/286 (7%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y     +F  +      +KI++++++ +    +  F+S   T  +   + K     +
Sbjct: 72  INTYALPLLKFYEYT-----KKISLKSLKSIDEVLLAEFLS-VYTGGLSLATKKNYRIAL 125

Query: 96  KSFLKYLKKRK-------ITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLLHTS 146
                Y+ K+              + N+  + +   N LP  LN ++    ++   +   
Sbjct: 126 LGLFSYIDKQNQDENEKSYIYNITLKNISGVNQSAGNKLPTHLNNEELEKFLEG--IDKI 183

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLP 204
             +  + ARN  ++ ++   G+R +EAL L  ++   +    T+ I+GKGDK R V L  
Sbjct: 184 EMSAKVRARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLKA 243

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AH 263
              +++L+ + +      +   L LF   +G  L      + + ++  + GL      AH
Sbjct: 244 FHIESLLKEWLMERELYPIKNDL-LFCNQKGSALTQAYLYKQVERIINFAGLRREKNGAH 302

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            LRHSFAT L     DL  +Q  LGH  L+T++IYT+ + +   + 
Sbjct: 303 MLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 348


>gi|324115011|gb|EGC08976.1| phage integrase [Escherichia fergusonii B253]
          Length = 392

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 114/270 (42%), Gaps = 17/270 (6%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +  Y   ++    + Q++  +I  +++      +   +  R L+ IK+   Y  +    +
Sbjct: 138 IKNYLYPQLGALKVAQITEGDILRYLAGLE---LKPATRNRHLALIKALFTYAVRMNFVS 194

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
            S    ++ L ++ S  +A+ + Q+ + ++  +   + E           L      GLR
Sbjct: 195 CSPARYIKALPETTSQRKAMADAQSKSWMEAAIQMRNGEPDNAALALLVFLA---LTGLR 251

Query: 170 ISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
           + E   L  ++I   + T+ ++  K  K+R VP+       + E         +L  +  
Sbjct: 252 LGETRYLLLEDIDWSRQTITLRETKNGKLRCVPVGDKAFVLLTE------QRQHLGDKGW 305

Query: 229 LFRGIRGKPLNPGVF-QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           +F G      NP    +R  +++    G+    T H +RH+FAT L+ +G D+ +I+ +L
Sbjct: 306 VFPGYNTT--NPVAEPRRLQKRICEKAGIS-PFTIHEMRHTFATKLIESGADIHTIKDLL 362

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           GH  +  T+ Y + +     + + +  D  
Sbjct: 363 GHSTIKVTERYLHGSPVRYHEAINKAMDTF 392


>gi|304382579|ref|ZP_07365073.1| integrase [Prevotella marshii DSM 16973]
 gi|304336204|gb|EFM02446.1| integrase [Prevotella marshii DSM 16973]
          Length = 417

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 58/281 (20%), Positives = 110/281 (39%), Gaps = 17/281 (6%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
                 F+ +   Y  E I IQ +  +   ++  + +K +  K+        LS + S L
Sbjct: 142 RKHLANFVKY--RYRVEDILIQKVDAVLVKDLEDYFAKEKGFKLNTS--AGYLSILASLL 197

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           K L KR+I      +N  +++     PR +  ++   +          E +  +  +  +
Sbjct: 198 KDLHKRRIIDTYPFIN-HSIRWEVGTPRYITREEVRRI----AALGEDELQGYEKVSRDM 252

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDL 216
                  GL  ++   LT Q+I  +     I+    K   +  +PLLP     I  Y  +
Sbjct: 253 FLFSCLTGLAYTDVYHLTEQHIFHEAGMTWIRKPRVKTGNVCHIPLLPEAAAIIERYRGI 312

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LS 275
                           I G          +++++ R  G+  + T H  RH+FA+ + LS
Sbjct: 313 HTRAFRHEPPKGYLLPIPGC----DTVNIHLKKIARLCGIQKTLTYHMARHTFASQMTLS 368

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            G  + S+  +LGH ++ TTQ+Y   + +     + +I  Q
Sbjct: 369 EGVSIESVSKMLGHSQIKTTQVYAETSPERVFQDVEQILPQ 409


>gi|229012556|ref|ZP_04169730.1| Transposition regulatory protein TnpA [Bacillus mycoides DSM 2048]
 gi|228748716|gb|EEL98567.1| Transposition regulatory protein TnpA [Bacillus mycoides DSM 2048]
          Length = 373

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 61/366 (16%), Positives = 137/366 (37%), Gaps = 84/366 (22%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +++ L+   G    T ++Y    + F  +L        T +  + +   ++  F+   R
Sbjct: 30  KYIKYLDNT-GKRPNTQKTYCYSLKHFYTYLEE------TNKDYKFIRLEDLVDFVGWLR 82

Query: 80  T--------------QKIGDRSLKRSLSGIKSFLKYLKKRKITTES-------------- 111
           +               K  ++++  +++ I +F  YL + +                   
Sbjct: 83  SPYQSSNVTPLQQEKAKRTEKTINLTITVIANFYDYLFRNEEVQNDMMEKLMKQGFIGGY 142

Query: 112 ---------------NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
                           I N+  LK+       L ++Q   ++              + R+
Sbjct: 143 SRYKSFLHHVNKDKPAIRNVLKLKEPRKKVNTLTKEQVQQVIQAT----------TNIRD 192

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQ---STLRIQGKGD---------KIRIVPLLP 204
           + ++ LL+  GLRI EALSL  ++ + D      +R+  +G+           R + +  
Sbjct: 193 TFLIQLLFETGLRIGEALSLFMEDFIFDHQKGHRIRLVNRGELENGAMLKTGEREIFVSQ 252

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLST 260
           S+     +Y      +L  +    +F  +RGK    P+     +   ++L++  G+  + 
Sbjct: 253 SLMDLYDDYLYEVIDELEFDSNF-VFVKLRGKDIGKPMEYWNVEALFKRLKKKTGI--NL 309

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQTHP 319
             H  RH+ AT       D++ +Q  LGH ++ TT  +Y + + ++    + E++++   
Sbjct: 310 HPHLFRHTHATIYYQKTKDIKQVQERLGHSQIQTTMNLYLHPSDED----IREVWEKAQS 365

Query: 320 SITQKD 325
               K 
Sbjct: 366 EFDLKK 371


>gi|149921966|ref|ZP_01910409.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149817228|gb|EDM76706.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 531

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 102/269 (37%), Gaps = 40/269 (14%)

Query: 62  TIRQLSYTEIRAFI-------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
            +R++   ++ A++       SKR  + +   ++   L+ ++  LK   + ++       
Sbjct: 210 PLRRIGARQVDAYVCAKAQERSKRTGKPLSASTIANHLAVLRRMLKVAHRWELIDRVP-- 267

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           +++  +K  ++   L++++A  L+++    T             +  L    G+R+ E  
Sbjct: 268 DIQPPRKG-TVDNYLSKREAQALLEHADPLTRD-----------LFMLALRTGMRLGELR 315

Query: 175 SLTPQNIMDDQSTLRIQG-----------KGDKIRIVPLLPSVRKAILEYYDLCPFDL-- 221
            L   ++      ++++            K  + R V +     + + +           
Sbjct: 316 ELRTGDVDLANGRIQVRRQRTQEGEVTPPKYGRKRTVQVPADALEVLRKRLAGLGRKELV 375

Query: 222 --NLNIQLPLFRGIR----GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
                      RG R    G+P +       + + R   G+  S   HTLRH+FATH ++
Sbjct: 376 FSKPKGYKAAHRGERAAKGGEPWSHKDLFNAVNRARAGAGIERSVGVHTLRHTFATHAVA 435

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            G  L  +   LGH  + TT  Y +   +
Sbjct: 436 AGVPLSLVSRQLGHSDVRTTMRYAHHAPE 464


>gi|225388779|ref|ZP_03758503.1| hypothetical protein CLOSTASPAR_02515 [Clostridium asparagiforme
           DSM 15981]
 gi|225045161|gb|EEG55407.1| hypothetical protein CLOSTASPAR_02515 [Clostridium asparagiforme
           DSM 15981]
          Length = 285

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 65/286 (22%), Positives = 111/286 (38%), Gaps = 32/286 (11%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+    + Q+L  E+  S  T+QSY    + F +FL   +  K T    ++         
Sbjct: 12  LQTLSQYQQHL-YEQEKSHPTIQSYLRSLKAFAVFLDGRSYTKETAIRWKET-------- 62

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
                T +    ++   L+ I  F ++              ++ LK    L     E++ 
Sbjct: 63  ----LTSRYAPNTVNAMLAAINGFAEFSGC-------PQFKVKPLKIQREL-FIRPEREL 110

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
                  L++ +  +   + R S +L  +   G+R+SE   +T + +    + +  +GK 
Sbjct: 111 TRSEYGRLVNAADRSG--NRRLSLVLQTICATGIRVSELRFITAEAVEKGYAQVDCKGKR 168

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
              R V L   +R+ I  Y               +F    G+PL+     R ++ L    
Sbjct: 169 ---RTVFLPEKLRRLIGIYM-----KKQKKTAGAVFITRSGRPLDRSNIWRDMKALCERA 220

Query: 255 GL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           G+ P     H LRH FA        DL  +  ILGH  +STT+IYT
Sbjct: 221 GVEPGKVFPHNLRHLFARTYYMLEKDLSRLADILGHTNVSTTRIYT 266


>gi|172065724|ref|YP_001816436.1| integrase family protein [Burkholderia ambifaria MC40-6]
 gi|171997966|gb|ACB68883.1| integrase family protein [Burkholderia ambifaria MC40-6]
          Length = 580

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 71/339 (20%), Positives = 123/339 (36%), Gaps = 51/339 (15%)

Query: 16  KERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           KE +  +    +ERG  LS LT +    D   +  F+   T  +  +  +R     + R 
Sbjct: 249 KEAERLILWAIVERGRALSSLTTE----DAVAYRAFIRRPTPHERWVGPVRPRGAPDWRP 304

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F     +  +  RS   +LS + +  ++L +++    +    ++   +      AL+   
Sbjct: 305 F-----SGGLSARSAAYTLSVLGALFRWLIEQRYLLANPFAGVKV--RDTRGANALDTSH 357

Query: 134 ALTLVDNVLLHTSHE-----------------TKWIDARNSAILYLLYGCGLRISEALSL 176
           A T  + +L+ T  +                 T     R   IL   Y  GLR SE +  
Sbjct: 358 AFTEGEWLLVRTIADGLEFRKDKPSGAPGSGWTPAAAQRLRFILDFGYATGLRASELVGA 417

Query: 177 TPQNIMDDQS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLF 230
           T  +I  D      L++ GKG K   V L P  R A+  Y       +         PL 
Sbjct: 418 TLGDIDTDAHGDAWLKVIGKGSKAARVALPPLARTALDRYLVARRLPVTPVRWRPDTPLI 477

Query: 231 RGIRGK---PLNPGVFQRYI-RQLRRYLGLP-----------LSTTAHTLRHSFATHLLS 275
             +       +      + + R   +   L               + H +RH+ ATH L+
Sbjct: 478 PSLAEDGAAAITSVRLWKVMQRFFAQTAALVDADNPALAQKLRQASPHWMRHTHATHALA 537

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            G +L +++  L H  +STT IY + +       M   +
Sbjct: 538 RGAELTTVRDNLRHASISTTSIYLHGDDVKRARQMSSAF 576


>gi|77415041|ref|ZP_00791110.1| integrase/recombinase, phage integrase family [Streptococcus
           agalactiae 515]
 gi|77158908|gb|EAO70150.1| integrase/recombinase, phage integrase family [Streptococcus
           agalactiae 515]
          Length = 265

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 110/298 (36%), Gaps = 36/298 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++  +L    GL++ T++SY    R FL                 +L   ++  +    
Sbjct: 2   KDFELHLRKA-GLAENTIRSYLYGVRFFLEHY--------------ELKIEDLFEYKGYL 46

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  +++   L G+  +L +     I  +   L    +++   L   ++    L L 
Sbjct: 47  LDN-FKPKTVNLRLQGLNKYLVF-----IGHDDLKLKFVKIQQKPFLEDVISHADYLFLK 100

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            +  L      KW       +++ L   G R+SE + L  +++  +     I  KG K+R
Sbjct: 101 RS--LKKDDNLKW-----HFVVWFLGATGARVSELIKLKVEHV--EVGYFDIYSKGGKMR 151

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-P 257
            + +   +R +  ++      D        LF     +P+      + ++       L  
Sbjct: 152 RLYIPKKLRDSCQKWL-----DTENRQSGYLFLNKFSQPITARGIAQQLKNYAVKYQLNT 206

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                H+ RH FA + L+   D+  +  ++GH  + TT+IY    +      +  + +
Sbjct: 207 KVVYPHSFRHLFAKNFLAKYNDIALLADLMGHESIETTRIYLRKTATEQQAIIDRVVN 264


>gi|116622417|ref|YP_824573.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225579|gb|ABJ84288.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 264

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/271 (18%), Positives = 103/271 (38%), Gaps = 37/271 (13%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + + R+  L+ L+  R  ++ T++ Y    + F        ++         L    +R 
Sbjct: 1   MTRLRKMMLEELQ-RRNYAQSTVKGYLRIVQDFAEHFHQQPDK---------LGPEHLRQ 50

Query: 74  FISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + +   R + +   ++++ ++ ++ F     KR    +     +   K+   +P  L+  
Sbjct: 51  YQAHLFRDKHLNAGTVQQYVAALRFFFNKTLKRHYLLDD----IPMPKRHRKMPEILSPD 106

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ- 191
           +   L+              +  +  +L  LY  G+R +E   L   +I   +  + I+ 
Sbjct: 107 EVALLI----------GSASNLLHQTMLMTLYSTGVRRAELCRLKSADIDSQRMMVHIRQ 156

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-----IRGKPLNPGVFQRY 246
           GKG   R VPL P + + +  Y+        +  +  LF G         P+   V    
Sbjct: 157 GKGGHDRDVPLSPRLLETLRVYWRW------MKPKTYLFPGTVNNWRADVPITTKVPWEA 210

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            RQ  +  G+    + HTLRH  A+  +  G
Sbjct: 211 CRQAAQRAGITKHVSPHTLRHYAASRTMPRG 241


>gi|325270579|ref|ZP_08137179.1| integrase [Prevotella multiformis DSM 16608]
 gi|324987155|gb|EGC19138.1| integrase [Prevotella multiformis DSM 16608]
          Length = 407

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 69/286 (24%), Positives = 112/286 (39%), Gaps = 24/286 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           SK +LQ Y    R F  FL + Y ++ I +         +   ++S          +  +
Sbjct: 129 SKDSLQKYSVLRRHFAEFLIYKYGKKDIGLAEFTPSVVQDFELYLST--AAGCAYNTSVK 186

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L  +K+   Y +KR        LN R   +  +    L +++ + + +  L     E  
Sbjct: 187 KLKALKTVTIYAQKRGYLLHDPFLNHRFHLEPVNR-GFLTDEEIMKIANKDLAIQRLEL- 244

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVR 207
               R+  I       GL   +  +LTP NI    D Q  +  + K      V LL   +
Sbjct: 245 ---VRDVFIFSCF--TGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPK 299

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + I +Y      D  L   LP+        L       Y++++    G+    T H  RH
Sbjct: 300 RIITKYGHKTYRDGKL---LPV--------LTNQKINAYLKEIADLCGIKKRLTFHLARH 348

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +FAT  LS G  + S+  +LGH  + TTQIY  + +K     M E+
Sbjct: 349 TFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEEL 394


>gi|317178966|dbj|BAJ56754.1| integrase-recombinase protein [Helicobacter pylori F30]
          Length = 355

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 64/286 (22%), Positives = 127/286 (44%), Gaps = 21/286 (7%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y     +F  +      +KI++++++ +    +  F+S   T  +   + K     +
Sbjct: 72  INTYALPLLKFHEYT-----KKISLKSLKSIDEVLLAEFLS-VYTGGLSLATKKNYRIAL 125

Query: 96  KSFLKYLKKRK-------ITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLLHTS 146
                Y+ K+              + N+  + +   N LP  LN ++    +++  +   
Sbjct: 126 LGLFSYIDKQNQDENEKSYIYNITLKNISGVNQSAGNKLPTHLNNEELEKFLES--IDKI 183

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLP 204
             +  + ARN  ++ ++   G+R +EAL L  ++   +    T+ I+GKGDK R V L  
Sbjct: 184 EMSAKVRARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLKA 243

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AH 263
              +++L+ + +      +   L LF   +G  L      + + ++  + GL      AH
Sbjct: 244 FHIESLLKEWLIERKLYPVKNDL-LFCNQKGSALTQAYLYKQVERIINFAGLRREKNGAH 302

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            LRHSFAT L     DL  +Q  LGH  L+T++IYT+ + +   + 
Sbjct: 303 MLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 348


>gi|227872201|ref|ZP_03990566.1| possible phage integrase/recombinase [Oribacterium sinus F0268]
 gi|227841952|gb|EEJ52217.1| possible phage integrase/recombinase [Oribacterium sinus F0268]
          Length = 184

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 76/195 (38%), Gaps = 14/195 (7%)

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
            +K +  +   + +++   + D               R+ AIL  LY  G+R+ E ++L 
Sbjct: 1   KIKTNQQVKEVITDEEIEKMRDQC----------CCKRDLAILDFLYSTGIRVGELVNLN 50

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
             +I  ++    + GKG K R V      +  +  Y       ++ N  L +        
Sbjct: 51  ISDINFEERECIVFGKGGKERKVYFDAKAKIHLQNYLVDR---IDGNPALFVTLDAPYTR 107

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L     +  +R+L +   +      H  R + AT  +  G  +  +Q ILGH ++ TT  
Sbjct: 108 LKISGVETRMRELGKRSLVNK-IYPHKFRRTMATRAIDKGMPIEQVQKILGHSQIDTTMQ 166

Query: 298 YTNVNSKNGGDWMME 312
           Y  VN  N  +   +
Sbjct: 167 YAIVNQSNVKNAHQK 181


>gi|159904807|ref|YP_001548469.1| integrase family protein [Methanococcus maripaludis C6]
 gi|159886300|gb|ABX01237.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 328

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 55/312 (17%), Positives = 117/312 (37%), Gaps = 30/312 (9%)

Query: 20  NWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
            W+     ER   G+ + T+     D  +  +FL F  +     +   +L  T+   F +
Sbjct: 25  KWISVFREEREFDGIKENTIIG---DLTKLGVFLEFAQQRL--EKEPDELYKTDFIKFFN 79

Query: 77  KR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKIT----TESNILNMRNLKKSNSLPRALNE 131
              + +KI   +  R  + +K F +  K           +      + +       A+ E
Sbjct: 80  YLEKERKISKNTQNRYFNLLKVFYRAFKLDNFMDFRDESNERKRFSSSRIEVKHYDAITE 139

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           +    ++  +  + S        R+  ++ +L+  G R+SE L+L  ++   +    R++
Sbjct: 140 QDLNLVIAKIFENQSSTK----IRDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLR 195

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN--------PGVF 243
                     +  +    +L+   L  ++     +  LF+    + L            F
Sbjct: 196 NTKSHEERKVVCSNDTLELLK--CLASYNFKKEPKDYLFQSTNQENLGKIADRNQITRTF 253

Query: 244 QRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            R + +L+    +        H+LRH  A  LL+ G  +  ++ ILGH  L TT  Y++ 
Sbjct: 254 GRAVDKLKEEEKIQQNKRYVVHSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSH- 312

Query: 302 NSKNGGDWMMEI 313
           + +     + +I
Sbjct: 313 SRQRKEQMLQDI 324


>gi|209901196|ref|YP_002286977.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae]
 gi|209574147|gb|ACI63035.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae]
          Length = 547

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 68/323 (21%), Positives = 123/323 (38%), Gaps = 42/323 (13%)

Query: 27  IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           +ERG  LS LT      D   +  F+   T  +  +   R     E R F     +  + 
Sbjct: 230 VERGRALSSLT----TDDAIAYRAFVRHPTPRERWVGPPRPRDSVEWRPF-----SGGLS 280

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            RS   +L+ + +  ++L +++    +    ++   + ++L  AL+  +  T  + +LL 
Sbjct: 281 ARSAAYALTVLSALFRWLIEQRYVLANPFAGVKV--RGHALRPALDTARGFTEGEWLLLR 338

Query: 145 T-SHETKWIDARN-------SAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGK 193
             +   +W    +         +L   Y  GLR SE +     N+  D+     L + GK
Sbjct: 339 AIADGLEWSYGWSEPAAQRLRFMLDFGYATGLRASELVGAVLGNVRLDEHGDHWLHLVGK 398

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGK-------PLNPGVF 243
           G K   V L P    A+ +Y       +     N + PL   +          P    V 
Sbjct: 399 GGKPGKVALPPLAYTALDQYLAQRQLPVSRERWNPKTPLVGSLGEDGNAGITGPHLWCVL 458

Query: 244 QRYIRQLRRYLGLPLST--------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           +R+  Q    +              T H +RHS A+H L+ G  L +++  L H  ++TT
Sbjct: 459 RRFFTQAAEAIEADHPVAAEKLRRATPHWMRHSHASHALARGAQLTAVRDNLRHASIATT 518

Query: 296 QIYTNVNSKNGGDWMMEIYDQTH 318
            +Y + +       M + +   H
Sbjct: 519 SMYLHGDELERARQMRQAFGARH 541


>gi|75761152|ref|ZP_00741143.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|228904570|ref|ZP_04068646.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis IBL 4222]
 gi|74491351|gb|EAO54576.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|228855051|gb|EEM99634.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis IBL 4222]
          Length = 392

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 97/275 (35%), Gaps = 26/275 (9%)

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           + ++    +  ++    +     +L    +  +   K   + +I   +   N++  +K  
Sbjct: 108 KDITKKMYQTALNDLHDKGYAFNTLDGIHTAGRMIFKKAIELQIIKSNPTDNVKLPRKVE 167

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDA--RNSAILYLLYGCGLRISEALSLTPQNI 181
           ++    N+K+A+  ++   L    +         +     +L   GLR  E L+L   ++
Sbjct: 168 TVEDIENDKKAIKYLEKEELAHFLQVAKEKGLDNDYVFFSILAYSGLRAGELLALKWTDV 227

Query: 182 MDDQSTLRIQGK------------------GDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
             + +T++I                        IR + +   + K +  +          
Sbjct: 228 DFENNTIKITKTLYNPDNNSQHYHLLTPKTKGSIRTIKMDQGIMKLLKSHKAKQNELKLY 287

Query: 224 NIQLPLFRGIRGKPLN-----PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
                + +G      +       + Q  +++L +   +  + T H+ RH+  + L+  G 
Sbjct: 288 TRPQYVDQGFVITKASGYPEVMKMIQNRLKRLIKLSNITKNITPHSFRHTHTSLLIEAGV 347

Query: 279 DLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMME 312
            ++ IQ  LGH  + TT  IY ++          +
Sbjct: 348 GIKEIQQRLGHTDIETTMNIYAHMTKNMEEKASQK 382


>gi|296506648|ref|YP_003667882.1| Integrase-recombinase [Bacillus thuringiensis BMB171]
 gi|296327235|gb|ADH10162.1| Integrase-recombinase [Bacillus thuringiensis BMB171]
          Length = 390

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 66/307 (21%), Positives = 117/307 (38%), Gaps = 34/307 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEE--------KITIQTIRQLSYTEIRAFISKRRT 80
           +   + T +SY  +   F   +  + EE        +     ++ L    IR + +  + 
Sbjct: 81  KNRKEDTKKSYVSEILSFCQCMVQHAEEFELNGEEVQQNDSLLKTLQPWHIRKYNAWLKQ 140

Query: 81  -------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--NLKKSNSLPRALNE 131
                        +L +    I+SFLK+L       +     ++  N+ + +   R L+ 
Sbjct: 141 VENGRNGDTYAVATLAKKTVLIRSFLKHLHVFSYIEKPLHEELQRANVNEQDRPNRDLSY 200

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRI 190
            + + +++                N  IL  L   G RI E  +   ++   D +  L++
Sbjct: 201 DEVMKILEFYKEQG-------HLVNYTILLALASTGARIQELCTARVKDLHYDGKYWLKV 253

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            GKGDK+R + +   + + I E      F   LN   + P+F   RG   NP      + 
Sbjct: 254 TGKGDKVRELFIPEHLFQCISEMRRRRGFQTVLNCGDESPVFINQRGNFYNPKTLSNQVT 313

Query: 249 QLRRYLGLPL------STTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTNV 301
            + +   L          TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   
Sbjct: 314 DMIKKTNLDFLKYRENPVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEK 373

Query: 302 NSKNGGD 308
           + K   +
Sbjct: 374 HMKRKNN 380


>gi|326943493|gb|AEA19386.1| Phage integrase [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 347

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 62/293 (21%), Positives = 119/293 (40%), Gaps = 29/293 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +  S+ T Q Y  D   FL ++        +I TI++LS+ E+  +  +  ++K    +L
Sbjct: 59  KKRSERTKQQYLHDLSHFLRYIKE------SIGTIQELSHNEMEIYFYEL-SKKYAATTL 111

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++  + ++ FLKY+      +++    ++ +  KK   + R L  ++   ++D       
Sbjct: 112 RKKKTIVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLYPEEVNQILD------- 164

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----DQSTLRIQGKGDKIRIVPL 202
            E K  +       +LL   GLRI E  +    +++     +   LR+ GKG+K R V +
Sbjct: 165 -ELKKSNYFVYTAFFLLTTTGLRIEEIATAKWADLVFHSSLNAYLLRVVGKGNKSREVRI 223

Query: 203 LPSVRKAILEYYDLCPF--DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-- 258
                 A+     L     +L+ +          G           + +    + L    
Sbjct: 224 FEDTLDALCHVRSLRKQTTELDTSSTSAFLPKADGSNYRADYLSSLVAKKIEEINLDFLR 283

Query: 259 ----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                 T HT RH  A +L+  G +L+ I+  LGH  + TT+ Y    ++   
Sbjct: 284 YRQDRITPHTCRHFMANYLMEKGIELKKIRDYLGHESIMTTERYLRERTRRQN 336


>gi|77734449|emb|CAJ26231.1| integerase-recombinase [Thermotoga petrophila RKU-1]
          Length = 190

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 30/210 (14%)

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           K    + +  L  +K++L +   R +   E    N     +   LP+A+   +   +++ 
Sbjct: 9   KNTPATQRNKLVVVKNYLNWKADRGLLNIEERFWNEAEPPRHTVLPKAIELDEVRRIIEA 68

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQGKGDKIRI 199
                       ++   AI  +L   G+R+SE ++L+  +I  ++ + +RI+GKG+K RI
Sbjct: 69  CD----------NSLYRAIFKVLANTGMRVSEIVNLSVHDISVNETARIRIKGKGNKERI 118

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           + +   + + ++                    G   K  +    QR +++  R  G+   
Sbjct: 119 IXISKELVEELMN------------------SGFFEKKPSVRSIQRAVKRYARKAGIKKK 160

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
            T H  RHSFA  L+  G  L  IQ++LGH
Sbjct: 161 VTPHIFRHSFAVALIERGVPLNKIQALLGH 190


>gi|313677913|gb|ADR74174.1| putative integrase [uncultured bacterium 52B7]
          Length = 404

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 96/257 (37%), Gaps = 17/257 (6%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNL 119
             + L+YT +R F    R +     ++ + +  +++ +     +             + +
Sbjct: 144 DFKDLTYTSLRDFEQYLREKGNAVNTIAKHMRQLRTLVNEAINQGYMHADAYPFRKYK-I 202

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K+       L   +   L          E + +     A L+  Y  GLR S+   LTP+
Sbjct: 203 KQEKGRHEFLTPDELKKL-----ETVEVEEESMRHVLDAFLFCCY-TGLRYSDFCQLTPE 256

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           N       +R+ GK   +    +   V   +  +       L +  + P        P N
Sbjct: 257 NF------IRVNGK-RWLYFKSVKTGVEIRLPLHLLFESRALGILDRYPDIGSFAALPCN 309

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                + +R+L    G+    T H  RH+ AT L+  G  + ++Q +LGH  + TTQIY+
Sbjct: 310 SE-VNKQLRKLAGLCGIKKRITYHVSRHTCATLLVHQGVAITTVQKLLGHTSVKTTQIYS 368

Query: 300 NVNSKNGGDWMMEIYDQ 316
            V S      +  +  +
Sbjct: 369 EVLSSTIVRDLKNVQRK 385


>gi|77734443|emb|CAJ26228.1| integerase-recombinase [Thermotoga sp. RQ2]
          Length = 190

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 30/210 (14%)

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           K    + +  L  +K++L +   R +   E    N     +   LP+A+   +   +++ 
Sbjct: 9   KNTPATQRNKLVVVKNYLNWKADRGLLNIEERFWNEAEPPRHTVLPKAIELDEVRRIIEA 68

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQGKGDKIRI 199
                       ++   AI  +L   G+R+SE ++L+  +I  ++ + +RI+GKG+K RI
Sbjct: 69  CD----------NSLYRAIFKVLANTGMRVSEIVNLSVHDISVNETARIRIKGKGNKERI 118

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           + +   + + ++                    G   K  +    QR +++  R  G+   
Sbjct: 119 INISKELVEELMN------------------SGFFEKKPSVRSIQRAVKRYARKAGIKKK 160

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
            T H  RHSFA  L+  G  L  IQ++LGH
Sbjct: 161 VTPHIFRHSFAVALIERGVPLNKIQALLGH 190


>gi|229170806|ref|ZP_04298420.1| Integrase-recombinase [Bacillus cereus AH621]
 gi|228612644|gb|EEK69853.1| Integrase-recombinase [Bacillus cereus AH621]
          Length = 314

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 68/307 (22%), Positives = 119/307 (38%), Gaps = 34/307 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEE--------KITIQTIRQLSYTEIRAFISKRRT 80
           +   + T +SY  +   F   +  + EE        +     ++ L    IR + +  + 
Sbjct: 5   KNRKEDTKKSYISEILSFCQCMVQHAEEFELNGEEVQQNDSLLKTLQPWHIRKYNAWLKQ 64

Query: 81  -------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--NLKKSNSLPRALNE 131
                        +L +    I+SFLK+L       +     ++  N+ + +   R L+ 
Sbjct: 65  VENGRNGSTYAVATLAKKTVLIRSFLKHLHVFSYIEKPLHEELQRANVNEQDRPNRDLSY 124

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRI 190
            + + ++           +     N AIL  L   G RI E  +   ++   D +  LR+
Sbjct: 125 DEVMKILGFY-------KERGHVVNYAILLALASTGARIQELCTARVKDLHYDGKYWLRV 177

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           +GKGDK+R + +   + + I E      F   L+   + PLF   RG   NP      + 
Sbjct: 178 KGKGDKVRELFIPEYLYQCISEMRRRRGFQTILDRGDECPLFVNQRGNFYNPKTLSNQVT 237

Query: 249 QLRRYLGLPL------STTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTNV 301
            + +   L          TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   
Sbjct: 238 DMIKKTNLDFLKYRENPVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEK 297

Query: 302 NSKNGGD 308
           + K   +
Sbjct: 298 HMKRKNN 304


>gi|228471370|ref|ZP_04056171.1| integrase [Porphyromonas uenonis 60-3]
 gi|228306871|gb|EEK15984.1| integrase [Porphyromonas uenonis 60-3]
          Length = 388

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/324 (15%), Positives = 105/324 (32%), Gaps = 36/324 (11%)

Query: 9   IVSFELLKERQNWL------------QNLEIERGLSKL-TLQSYECDTRQFLIFLAFYTE 55
            VS ELLK    ++            + L+ +R  S   T ++     R    F+   +E
Sbjct: 84  AVSAELLKNYLQYVGQTPTTLLALSAEELKAQRECSSAGTYRNNRYADRLLNSFVRSRSE 143

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           + +    +  L+      +    +       ++   L  +   +     +     +    
Sbjct: 144 QDV---PLSALTIEFFEDYRFYLKRAGYAPATINGHLCWLSRLMYRAVSQGTIRFNPFEE 200

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           ++        PR L++     L+         E          +       GL   +   
Sbjct: 201 VKYEVVERK-PRFLSKGDVSKLLAFPFQDKGAELS------RRMFLFSVFTGLAFVDLQG 253

Query: 176 LTPQN---IMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           L         + +  +R  + K +   ++PL P   + +  Y               +F 
Sbjct: 254 LRASQIETNSEGKRYIRKARQKTEVESLIPLHPIAEQILALY-----TKAKSRGDYKIFP 308

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
                 ++     R+++ +    G+    T H  RH+F T  L  G  + SI  ++GH  
Sbjct: 309 DT----MSDWKLLRHLKAVGLACGIRTPLTWHCARHTFGTLTLEAGIPIESIAKMMGHSS 364

Query: 292 LSTTQIYTNVNSKNGGDWMMEIYD 315
           +++TQIY  V  +     M  + +
Sbjct: 365 IASTQIYAQVTDQKIAKDMERLME 388


>gi|17549123|ref|NP_522463.1| putative integrase/recombinase protein [Ralstonia solanacearum
           GMI1000]
 gi|17431374|emb|CAD18053.1| putative integrase/recombinase protein [Ralstonia solanacearum
           GMI1000]
          Length = 566

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 72/331 (21%), Positives = 127/331 (38%), Gaps = 42/331 (12%)

Query: 16  KERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           KE +  +    IERG  LS LT +    D   +  FL   +  +  +   R  +  + R 
Sbjct: 245 KEAERLILWAIIERGRPLSSLTTE----DAIAYRGFLRRPSPHERWVGPARPRASADWRP 300

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F     T  +  RS+  SLS + +  ++L +++    +    ++      +   AL+   
Sbjct: 301 F-----TDGLSARSIAYSLSVLGAMFRWLIQQRYVLANPFAGIKVRGGGRT--AALDASH 353

Query: 134 ALTLVDNVLLHT-SHETKWIDARNSA-------ILYLLYGCGLRISEALSLTPQNIMDDQ 185
           A +  +  L+ T +   +W     +A       +L   Y  GLR SE ++     I  D+
Sbjct: 354 AFSEGEWALVRTLADGLEWSYGWEAAAAQRLRFVLDFAYATGLRASELITARLGGIETDR 413

Query: 186 ---STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG- 241
                L + GKG +   V L P  R A+  Y       +      P    I    L+PG 
Sbjct: 414 QSDHWLSLIGKGGRAGKVALPPLARTALDRYLVERGLPVTQARWNPQTPLIGALGLDPGG 473

Query: 242 ---------VFQRYIRQLRRYLGLP--------LSTTAHTLRHSFATHLLSNGGDLRSIQ 284
                    V +R+ R     +              + H +RH+ A+H L+ G +L +++
Sbjct: 474 GITGSRLWSVMRRFFRVAADLIERDHTALAEKLRKASPHWMRHTHASHALARGAELTTVR 533

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
             L H  +STT IY + +       +   + 
Sbjct: 534 DNLRHASISTTSIYLHGDDVKRARQIEAAFA 564


>gi|229021527|ref|ZP_04178126.1| Phage integrase [Bacillus cereus AH1273]
 gi|229027280|ref|ZP_04183546.1| Phage integrase [Bacillus cereus AH1272]
 gi|229035259|ref|ZP_04189194.1| Phage integrase [Bacillus cereus AH1271]
 gi|228728071|gb|EEL79112.1| Phage integrase [Bacillus cereus AH1271]
 gi|228734016|gb|EEL84744.1| Phage integrase [Bacillus cereus AH1272]
 gi|228739760|gb|EEL90158.1| Phage integrase [Bacillus cereus AH1273]
          Length = 360

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 62/293 (21%), Positives = 116/293 (39%), Gaps = 29/293 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +  S+ T Q Y  D   FL ++         I TI++LS+ ++  +  +  ++K    +L
Sbjct: 72  KNRSERTKQQYLHDLSHFLRYIKE------AIGTIQELSHNDMEIYFYEL-SKKYAATTL 124

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++  + ++ FLKY+      +++    ++ +  KK   + R L  ++   ++D       
Sbjct: 125 RKKKTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLYPEEVTQILD------- 177

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----DQSTLRIQGKGDKIRIVPL 202
            E K  +       +LL   GLRI E  +    N++     +   LR+ GKG+K R V +
Sbjct: 178 -ELKKSNYFVYTAFFLLTTTGLRIEEIATAKWANLVFHSSLNAYLLRVVGKGNKSREVRI 236

Query: 203 LPSVRKAILEYYDLCPF--DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-- 258
                 A+     L      L+ +          G           + +      L    
Sbjct: 237 FEDTLDALCHVRSLRKQTTKLDASNTSAFLPKADGSNYRADYLSSLVAKKIEETNLTFLR 296

Query: 259 ----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                 T HT RH  A +L+  G +L+ I+  LGH  + TT+ Y    ++   
Sbjct: 297 YRQDRITPHTCRHFMANYLMEKGIELKKIRDYLGHESIMTTERYLRERTRRQN 349


>gi|116049139|ref|YP_792059.1| putative bacteriophage integrase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|37596415|gb|AAQ94690.1| PA0728 [Pseudomonas phage Pf1]
 gi|115584360|gb|ABJ10375.1| putative bacteriophage integrase [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 338

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 63/295 (21%), Positives = 120/295 (40%), Gaps = 43/295 (14%)

Query: 29  RGLSKLTLQSYECDT---------RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           R LS+L  + YE            +  L+ +A    + +     ++ +  ++ AF  +  
Sbjct: 58  RLLSELIERWYELHGHSITSGRRRKNLLLLIASRLGDPVG----QRFTTADLVAFRKREL 113

Query: 80  TQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            +    RS+    S +K+ F +  +   I   + +  ++ LK   S+   L++ Q   LV
Sbjct: 114 EEGALPRSINVRYSYLKTVFTELRRLGDIDYPNPLDRLKPLKPQQSVVSFLSKDQVAVLV 173

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                 ++          + I  +    G R SEA  LT   ++ D S +    K  ++R
Sbjct: 174 ------SALRDYSTFPHLALISEVCLATGARWSEAQGLTLP-MVRDGSVVFSNTKSKRVR 226

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-- 256
            VP+   ++  + +Y                F G    P     F R +    +  G+  
Sbjct: 227 SVPISTDLQARLEKY----------------FAGRNRFPSCREAFARMV----KRCGIVL 266

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           P     H LRH+FA+H + NGG++ +++ ILGH  L+ T  Y +++ +   D + 
Sbjct: 267 PRGQCTHVLRHTFASHFMMNGGNILALKEILGHSSLNMTMRYAHLSPEYLRDAIR 321


>gi|29347338|ref|NP_810841.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|167762412|ref|ZP_02434539.1| hypothetical protein BACSTE_00766 [Bacteroides stercoris ATCC
           43183]
 gi|237723042|ref|ZP_04553523.1| transposase [Bacteroides sp. 2_2_4]
 gi|253570441|ref|ZP_04847849.1| transposase [Bacteroides sp. 1_1_6]
 gi|265764111|ref|ZP_06092679.1| transposase [Bacteroides sp. 2_1_16]
 gi|293372587|ref|ZP_06618969.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|299148364|ref|ZP_07041426.1| integrase [Bacteroides sp. 3_1_23]
 gi|317479065|ref|ZP_07938206.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|29339238|gb|AAO77035.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|167699518|gb|EDS16097.1| hypothetical protein BACSTE_00766 [Bacteroides stercoris ATCC
           43183]
 gi|229447564|gb|EEO53355.1| transposase [Bacteroides sp. 2_2_4]
 gi|251839390|gb|EES67473.1| transposase [Bacteroides sp. 1_1_6]
 gi|263256719|gb|EEZ28065.1| transposase [Bacteroides sp. 2_1_16]
 gi|291515084|emb|CBK64294.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
 gi|292632396|gb|EFF50992.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|298513125|gb|EFI37012.1| integrase [Bacteroides sp. 3_1_23]
 gi|301162793|emb|CBW22340.1| putative phage integrase [Bacteroides fragilis 638R]
 gi|316904721|gb|EFV26534.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 409

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 116/292 (39%), Gaps = 25/292 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSLKR 90
           +  TL +Y    R    F+      K+      QL+   IR +       +     +L+ 
Sbjct: 130 APTTLSTYLFTYRTLSEFIKAKF--KVPDLVFGQLNEQFIRDYQDFILLEKGYAVDTLRG 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L+ +K   +   K   + + +  + +  K+  + P+AL+ +    L D  +     E +
Sbjct: 188 YLAILKKICRIAYKEGHSEKYHFCHFKLPKQKETTPKALSRENFEKLRDLEI----PEKR 243

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRI---QGKGDKIRIVPLLPSV 206
                   +       G   ++A+S+T +N   DD+ +L +   + K D +  V LLP  
Sbjct: 244 RSHVITRDLFLFACYTGTAYADAVSITRKNLFRDDEGSLWLKYQRKKTDYLGRVKLLPEA 303

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              I +Y D        + +  LF      P +    +  ++ LR   GL      H  R
Sbjct: 304 VALIEKYRD--------DTRETLFP-----PQDYHTLRANMKSLRLMAGLSQDLVYHMGR 350

Query: 267 HSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           HSFA+ + L  G  + +I  +LGH  + TTQIY  V  K   + M    + T
Sbjct: 351 HSFASLVTLEEGVPIETICKMLGHSNIKTTQIYARVTPKKLFEDMDRFVEAT 402


>gi|53714292|ref|YP_100284.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52217157|dbj|BAD49750.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 409

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 116/292 (39%), Gaps = 25/292 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSLKR 90
           +  TL +Y    R    F+      K+      QL+   IR +       +     +L+ 
Sbjct: 130 APTTLSTYLFTYRTLSEFIKAKF--KVPDLVFGQLNEQFIRDYQDFILLEKGYAVDTLRG 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L+ +K   +   K   + + +  + +  K+  + P+AL+ +    L D  +     E +
Sbjct: 188 YLAILKKICRIAYKEGHSEKYHFCHFKLPKQKETTPKALSRENLEKLRDLEI----PEKR 243

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRI---QGKGDKIRIVPLLPSV 206
                   +       G   ++A+S+T +N   DD+ +L +   + K D +  V LLP  
Sbjct: 244 RSHVITRDLFLFACYTGTAYADAVSITRKNLFRDDEGSLWLKYQRKKTDYLGRVKLLPEA 303

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              I +Y D        + +  LF      P +    +  ++ LR   GL      H  R
Sbjct: 304 VALIEKYRD--------DTRETLFP-----PQDYHTLRANMKSLRLMAGLSQDLVYHMGR 350

Query: 267 HSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           HSFA+ + L  G  + +I  +LGH  + TTQIY  V  K   + M    + T
Sbjct: 351 HSFASLVTLEEGVPIETICKMLGHSNIKTTQIYARVTPKKLFEDMDRFVEAT 402


>gi|300693953|ref|YP_003749926.1| integrase/recombinase protein [Ralstonia solanacearum PSI07]
 gi|299075990|emb|CBJ35301.1| putative integrase/recombinase protein [Ralstonia solanacearum
           PSI07]
          Length = 566

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 72/330 (21%), Positives = 121/330 (36%), Gaps = 42/330 (12%)

Query: 16  KERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           KE +  +    IERG  LS LT +    D   +  FL   T  +  +   R  +  E R 
Sbjct: 245 KEAERLILWAIIERGRPLSSLTTE----DAIAYRGFLRRPTPHERWVGPARPRASVEWRP 300

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F     T  +  RS+  SLS + +  ++L +++    +    ++      +   AL+   
Sbjct: 301 F-----TNGLSARSIAYSLSVLGAMFRWLIQQRYVLANPFAGIKVRGGGRT--AALDASH 353

Query: 134 ALTLVDNVLLHT-SHETKWIDARN-------SAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           A T  +  L  T +   +W              +L   Y  GLR SE ++     I  D+
Sbjct: 354 AFTEGEWALARTIADGLEWSYGWEAPAAQRLRFVLDFAYATGLRASELIAAKLGGIETDR 413

Query: 186 ---STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-- 240
                L + GKG +   V L P  R A+  Y       +      P    I    L+P  
Sbjct: 414 QGDHWLNLIGKGSRAGKVALPPLARTALDRYLVERGLPVTRARWNPQAPLIGALGLDPDG 473

Query: 241 --------GVFQRYIRQLRR--------YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
                    V +R+                      + H +RH+ A+H L+ G +L +++
Sbjct: 474 GITGSRLWSVVRRFFWTAADIIEGDHAVLADKLRKASPHWMRHTHASHALARGAELTTVR 533

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
             L H  +STT IY + +       +   +
Sbjct: 534 DNLRHASISTTSIYLHGDDVKRARQIEAAF 563


>gi|297618132|ref|YP_003703291.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297145969|gb|ADI02726.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 349

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 106/280 (37%), Gaps = 19/280 (6%)

Query: 46  FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR 105
           +L+ +  Y    +    ++ +    ++  I++   Q       ++ L  +    KY  + 
Sbjct: 78  YLLAMNKYIFPALGNMKLKDVRPIHVQNLINQMGEQGKSKSLQRQVLVALNGMFKYAVRN 137

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
            + + +        +   +  +AL   Q   L+       +              +L   
Sbjct: 138 GLISGNPAQYTEYYEVPANERQALTPAQVAELLQACKGTRAELAT----------HLALY 187

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGK----GDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           CGLR  E ++L   ++ ++  T+ ++       ++ +         + I+         L
Sbjct: 188 CGLRRGEMVALKWSDLDENTRTIHVKKAVEFVNNQPKEKSPKSKAEERIIPIPPHLWDML 247

Query: 222 NLNIQLPLF--RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
               +  +F     +G  +     +R +  +++   +    T H LRH++AT L   G  
Sbjct: 248 QSQPKKSMFVIPSDQGTQMTKTAVRRLLEPVQKK--VSFYFTWHMLRHTYATALDKLGIP 305

Query: 280 LRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQTH 318
            ++ Q +LGH  +STT+ IYT++  ++      +I +  H
Sbjct: 306 PKTCQYLLGHADISTTKNIYTHIQDEHIAQAARQIQNIYH 345


>gi|294085315|ref|YP_003552075.1| phage integrase family protein [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664890|gb|ADE39991.1| phage integrase family protein [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 396

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 95/276 (34%), Gaps = 17/276 (6%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
                T ++Y    +  LI              +  ++   I  +    R  +    +  
Sbjct: 111 RCKPSTQRTYRNMLQNQLI-------PNFGTMQLDAITREAIADWFD--RFSQTAPGNAN 161

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R L  +   L +  +  +   +    +   K    L R L+ ++   L   +  H +   
Sbjct: 162 RGLILLNQILNFAVRHGLLARNVAAGLTKNK-GKKLTRFLSGEELARLYHVMDEHVADCP 220

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           +    +   I+ LL   G R  E L L    I  D+  LR++      R V L  S R  
Sbjct: 221 RTERKQGRDIVRLLILTGCRKGEILRLRWDEIDGDR--LRLKDSKTGPREVHLSLSARAI 278

Query: 210 ILEYYDLCPFDLNLN----IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           +  +          +        +F             + +   +R+  GL      H L
Sbjct: 279 LDRHKRATRSHAGGHGSQYRDGYVFPSKICPDQPITSIESFWYAVRQRAGLD-DVRLHDL 337

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           RH+FA+H + +G  L  +  +LGH ++S T  Y +V
Sbjct: 338 RHTFASHAVMSGVPLPVVARLLGHSKISMTMRYAHV 373


>gi|257452338|ref|ZP_05617637.1| integrase/recombinase [Fusobacterium sp. 3_1_5R]
          Length = 262

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 59/272 (21%), Positives = 117/272 (43%), Gaps = 30/272 (11%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E +  +Q ++ +LE++RGLS+ +L++ + D  QFL ++  Y + ++T+ T++        
Sbjct: 3   EFILWKQKYIHHLELQRGLSQNSLRAIQKDLEQFLNYMEEYQDGELTVLTLK-------- 54

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           ++    + +K    +++R +S IK FL++LK+  I  E   L    ++K         E+
Sbjct: 55  SYFFHLQ-EKHASNTIQRKISSIKVFLRFLKEENIVQEDFSLYFTKVRK---------EE 104

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
             +   +  +          + R+ AI  LLY  G++  E LSLT   I   +  +    
Sbjct: 105 DTILFFEKDVWEQFRRAFENNLRDKAIFELLYSTGMKPKEFLSLTYLQIEWQKQEIYFFQ 164

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K +  R V      ++A+  Y +                  R    +    +   ++ R 
Sbjct: 165 KKES-RTVFFSHRAKEALWNYCEEKGRKEG-----------RIWDFSEKTLRNIFKKYRE 212

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
            +    + T ++ RH+FA  LL  G     +Q
Sbjct: 213 KISGLENMTIYSFRHTFAITLLRAGMPKSELQ 244


>gi|291561889|emb|CBL40692.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4]
          Length = 286

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 63/306 (20%), Positives = 123/306 (40%), Gaps = 30/306 (9%)

Query: 13  ELLKERQN----WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           EL K+++N    +   L  ++ +S  T  +Y    RQ L      TE             
Sbjct: 3   ELPKDQENLAESFRLYLR-KKNMSGNTGDAYGRAIRQLLSLYPVPTE------------- 48

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           + +R + S          ++ + +  +  FL +L++ +     ++   R   +S  +PR 
Sbjct: 49  SLLRKYRS-LLIANYRPATINQRIYAVNHFLLFLEEEQPELSPDLSGFRL--RSVKIPRD 105

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
             +   +T  D   L  + + +  D     I+  L   G+R+SE + +  ++       L
Sbjct: 106 TFQDSIITNEDCETLQRNLKAEHHDFW-YFIVRFLVTTGVRVSELVQIKAEH--LACGYL 162

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            +  KG KIR + +  S+ +    + D             LF G  G+P+        ++
Sbjct: 163 DLYSKGGKIRRIYIPDSLCQEAKAWCDRRGI-----TSGFLFVGKNGRPVTTRGIHSQLK 217

Query: 249 QLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                 G+ P +   H+ RH FA + L+   D+  +  +LGH  + TT+IY   +SK   
Sbjct: 218 HYAVRYGIDPDTMYPHSFRHRFAKNFLALSSDISLLADLLGHESIETTRIYLTRSSKEQK 277

Query: 308 DWMMEI 313
             + ++
Sbjct: 278 LLLDKM 283


>gi|317014094|gb|ADU81530.1| phage integrase family site specific recombinase [Helicobacter
           pylori Gambia94/24]
          Length = 356

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 63/286 (22%), Positives = 125/286 (43%), Gaps = 21/286 (7%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y     +F  +      +K+++++++ +    +  F+S   T  +   + K     +
Sbjct: 73  INTYALPLLKFYEYA-----QKLSLKSLKSIDEVMLAEFLS-IYTGGLSLATKKNYRIAL 126

Query: 96  KSFLKYLKKRK-------ITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLLHTS 146
                Y+ K+              + N+  + +   N LP  LN ++    +++  +   
Sbjct: 127 LGLFSYIDKQNQDKNEKSYIYNITLKNISGVNQSAGNKLPTHLNNEELEKFLES--IDKI 184

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLP 204
             +  + ARN  ++ ++   G+R +EAL L  ++   +    T+ I+GKGDK R V L  
Sbjct: 185 EMSAKVRARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLKA 244

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AH 263
              +++L+ +        +   L LF   +G  L      + + ++  + GL      AH
Sbjct: 245 FHIESLLKEWLTERELYPVKNDL-LFCNQKGMALTQAYLYKQVERIINFAGLRREKNGAH 303

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            LRHSFAT L     DL  +Q  LGH  L+T++IYT+ +     + 
Sbjct: 304 MLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKDRLKEA 349


>gi|294778653|ref|ZP_06744075.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294447602|gb|EFG16180.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 430

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 97/257 (37%), Gaps = 17/257 (6%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNL 119
             + L+YT +R F    R +     ++ + +  +++ +     +             + +
Sbjct: 168 DFKDLTYTFLRDFEQYLREKGNAVNTIAKHMRQLRTLVNEAINQGYMHADAYPFRKYK-I 226

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K+       L   +   L    +     E + +     A L+  Y  GLR S+   LTP+
Sbjct: 227 KQEKGRHEFLTPDELKKLETVKV-----EEESMRHVLDAFLFCCY-TGLRYSDFCQLTPE 280

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           N       +RI GK   +    +   V   +  +       L +  + P        P N
Sbjct: 281 NF------IRINGK-RWLYFKSVKTGVEIRLPLHLLFESRALGILDRYPDIGSFAALPCN 333

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                + +R+L    G+    T H  RH+ AT L+  G  + ++Q +LGH  + TTQIY+
Sbjct: 334 SE-VNKQLRKLAELCGIKKRITYHVSRHTCATLLVHQGVAITTVQKLLGHTSVKTTQIYS 392

Query: 300 NVNSKNGGDWMMEIYDQ 316
            V S      +  +  +
Sbjct: 393 EVLSSTIVRDLKNVQRK 409


>gi|288926490|ref|ZP_06420409.1| integrase [Prevotella buccae D17]
 gi|288336702|gb|EFC75069.1| integrase [Prevotella buccae D17]
          Length = 409

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 62/287 (21%), Positives = 117/287 (40%), Gaps = 25/287 (8%)

Query: 32  SKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K T  +Y    R    F+   +  + I    + +    + ++F+     + +   + + 
Sbjct: 130 AKGTYPAYFYTRRTLAEFIQKKFHSKDIAFGQLTEQFIHDYQSFVVD--DKGLAIETSRH 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L+ IK   +   K     +    +    K+    P+AL+ +    +  + L+   H + 
Sbjct: 188 YLAIIKKVCRKAYKEGYADKCFFAHFSLPKQEEKTPKALSRESFEKI--HDLVIPEHRSS 245

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRI---QGKGDKIRIVPLLPSV 206
            I AR+  +       G   ++A+S+T  N+  DD+ +L +   + K +    V LLP  
Sbjct: 246 HILARD--LFLFACYTGTSYADAVSVTRDNLFTDDEGSLWLKYRRKKNELQACVKLLPEA 303

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            + I +Y        N + +  LF  +    L     +R ++ L     +    T H  R
Sbjct: 304 LELIEKY--------NDDTRPTLFPMLYHPNL-----RRLMKCLAVLADIKEDLTYHAGR 350

Query: 267 HSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           HSFA+ + L  G  + +I  +LGH  L TTQ Y  V  K   + M +
Sbjct: 351 HSFASLITLEAGVPIETICKMLGHSNLQTTQRYAKVTPKKLFEDMDK 397


>gi|317058881|ref|ZP_07923366.1| tyrosine recombinase xerD-like protein [Fusobacterium sp. 3_1_5R]
 gi|313684557|gb|EFS21392.1| tyrosine recombinase xerD-like protein [Fusobacterium sp. 3_1_5R]
          Length = 266

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 59/272 (21%), Positives = 117/272 (43%), Gaps = 30/272 (11%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E +  +Q ++ +LE++RGLS+ +L++ + D  QFL ++  Y + ++T+ T++        
Sbjct: 7   EFILWKQKYIHHLELQRGLSQNSLRAIQKDLEQFLNYMEEYQDGELTVLTLK-------- 58

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           ++    + +K    +++R +S IK FL++LK+  I  E   L    ++K         E+
Sbjct: 59  SYFFHLQ-EKHASNTIQRKISSIKVFLRFLKEENIVQEDFSLYFTKVRK---------EE 108

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
             +   +  +          + R+ AI  LLY  G++  E LSLT   I   +  +    
Sbjct: 109 DTILFFEKDVWEQFRRAFENNLRDKAIFELLYSTGMKPKEFLSLTYLQIEWQKQEIYFFQ 168

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K +  R V      ++A+  Y +                  R    +    +   ++ R 
Sbjct: 169 KKES-RTVFFSHRAKEALWNYCEEKGRKEG-----------RIWDFSEKTLRNIFKKYRE 216

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
            +    + T ++ RH+FA  LL  G     +Q
Sbjct: 217 KISGLENMTIYSFRHTFAITLLRAGMPKSELQ 248


>gi|291294978|ref|YP_003506376.1| integrase family protein [Meiothermus ruber DSM 1279]
 gi|290469937|gb|ADD27356.1| integrase family protein [Meiothermus ruber DSM 1279]
          Length = 251

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 84/204 (41%), Gaps = 15/204 (7%)

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           +L +        +   L+ +    L++      ++           +L  L+  G R+SE
Sbjct: 54  MLELAPPPARRRVVERLSPEAVSRLLE-----AAYRLNPRKPVYGLMLKTLFYTGCRVSE 108

Query: 173 ALSLTPQNIMDDQS--TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
            + L  Q++  D     L +   K D +R VP+LP++ + +  +       L    +  L
Sbjct: 109 FVFLRAQDLHLDGEAPHLYVHKAKKDSVRYVPILPALAQELRVH-------LAGRTRGYL 161

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F   R +  +P   Q+ I+   +  GL      H LRHS A  LL  G  L  +Q  LGH
Sbjct: 162 FESNRHQRYSPRAVQKLIQAAAKEAGLERRVYPHLLRHSVAQILLDRGMPLEQLQKFLGH 221

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEI 313
             L TTQIY   + +  G+    +
Sbjct: 222 RDLKTTQIYAESSLEQVGESYRRV 245


>gi|255693814|ref|ZP_05417489.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|260620384|gb|EEX43255.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 409

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/285 (23%), Positives = 115/285 (40%), Gaps = 25/285 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSLKR 90
           +  TL +Y    R    F+      K+      QL+   IR +       +     +L+ 
Sbjct: 130 APTTLSTYLFTYRTLSEFIKAKF--KVPDLAFGQLNEQFIRDYQDFILLEKGYAVDTLRG 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L+ +K   +   K   + + +  + +  K+  S PRAL+ +    L D  +     E +
Sbjct: 188 YLAILKKICRIAYKEGHSEKYHFCHFKLPKQKESTPRALSRENFEKLRDLEI----PEKR 243

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRI---QGKGDKIRIVPLLPSV 206
                   +       G   ++A+S+T +N+  DD  +L +   + K D +  V LLP  
Sbjct: 244 RSHIITKDLFLFACYTGTAYADAVSITRENLFTDDGGSLWLKYRRKKTDYLGRVKLLPEA 303

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              I +Y D        + +  LF      P +    +  ++ LR   GL      H  R
Sbjct: 304 VALIEKYRD--------DTRETLFP-----PQDYHTLRGNMKALRLMAGLSQDLVYHMGR 350

Query: 267 HSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           HSFA+ + L  G  + +I  +LGH  + TTQIY  V+ K   + M
Sbjct: 351 HSFASLVTLEEGVPIETISKMLGHSNVRTTQIYARVSPKRLFEDM 395


>gi|224369728|ref|YP_002603892.1| XerC [Desulfobacterium autotrophicum HRM2]
 gi|223692445|gb|ACN15728.1| XerC [Desulfobacterium autotrophicum HRM2]
          Length = 409

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 64/308 (20%), Positives = 125/308 (40%), Gaps = 20/308 (6%)

Query: 8   EIVSFELLKER-QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           +++S    KE  +N+ +  E ++  SK+T+  Y   + +F+ +L         I     +
Sbjct: 105 DLLSDPYYKEISKNFKKYCE-QKDYSKVTVDHYVKQSERFMDYLISN-----GISDCHDI 158

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNS 124
               +  +I          ++++++L  I+SFL+YL +++I           +  +K   
Sbjct: 159 DMPAVNGYIRTLA--GYTYKTVEQNLCSIRSFLRYLLEKEILKTDLASKTPMIQARKQTR 216

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           +P    + +  TL+  ++       +     + AI+ L    GLR+++  +LT      +
Sbjct: 217 IPSVWTKDELDTLIGAIVRGNPKGKR-----DYAIILLACVLGLRVTDIKNLTFDCFHWE 271

Query: 185 QSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
              L   Q K  +   +PL   V  A+++Y       ++  I                  
Sbjct: 272 TKELIFTQSKTRETVTLPLPSEVGWAVIDYLKYSRPKVDSPIIFVRHLAPFLPFSEKDHL 331

Query: 244 QRYIRQLRRYLGLP---LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            + IR   R   LP        H+LRH+ A+ +L +G  L  I  ILGH    +T +Y  
Sbjct: 332 HQIIRDYMRIAHLPTLKKRRGMHSLRHTAASRMLEHGTPLVVISDILGHMDTDSTAVYLK 391

Query: 301 VNSKNGGD 308
           V+ K   +
Sbjct: 392 VDIKKLKE 399


>gi|291009716|ref|ZP_06567689.1| phage integrase family site specific recombinase [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 319

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 100/268 (37%), Gaps = 11/268 (4%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQ---LSYTEIRAFISKRRTQKIGDRSLKRS 91
           T  +Y     Q   +LA +  +            ++   I AF +     +    ++ + 
Sbjct: 37  TRYNYVLAAAQLARYLAEHAPDPEADAAAEDPAEVAKAHIEAFQAWMIETRSAATAVNKH 96

Query: 92  LSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
              ++   K+ +   +    S +  +R  K    L   L E+    L++           
Sbjct: 97  -KALQQLFKWLMLDEEEIDRSPMERVRLPKAPTKLVPVLEEEATTRLLEVC-----KGKD 150

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
           ++  R+ AI+ L    G R++E   L  +++     ++ + GKG K+R V +     +A+
Sbjct: 151 FLSLRDQAIIRLFCNTGARLAEVAHLRLEDVDLKTESVTLYGKGGKVRRVRMGARTARAL 210

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
             Y          ++         G+ LN    +  +++L +  GL     AH  RH++A
Sbjct: 211 SRYLRARAKRKGADLPNLWLADRGGQALNANGIKIRLKRLGQRAGLD-HVHAHRWRHTYA 269

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIY 298
                 GGD   +  +LG    +  + Y
Sbjct: 270 HQWKRAGGDTGDLMLLLGWSSDAMPRHY 297


>gi|149916267|ref|ZP_01904787.1| Phage integrase [Roseobacter sp. AzwK-3b]
 gi|149809721|gb|EDM69573.1| Phage integrase [Roseobacter sp. AzwK-3b]
          Length = 390

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 61/296 (20%), Positives = 114/296 (38%), Gaps = 21/296 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L   +  R  S   +Q Y      F +         I+   ++QL+        ++ 
Sbjct: 104 DHYLPWYKTYRRASANIVQMYRS---NFHLRFGHRQLHSISQTDLKQLT--------NEM 152

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +       S+  ++  ++  L+      +    + L+    K  N LP     ++ L+  
Sbjct: 153 KQLGYAPGSVNTTVVVLRGMLRRADDWGLCRIHHSLH----KPPNLLPDTKRHERFLSRD 208

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKI 197
           +   L      +     N AIL+LLY  G R SE L+   ++I  D+   RI   K  + 
Sbjct: 209 EAQKLQVVLRKRGATPVNLAILFLLY-TGARKSEVLNAEWRSINMDRCEWRIPLSKNGQP 267

Query: 198 RIVPLLPSVRKAIL--EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           R V L       +     Y    +         +F   +   L         +++R    
Sbjct: 268 RTVILSQKAVAILQSARSYQQRHYGKQAKQVSAVFANPQTL-LPYHNIWETWKRVRIEAD 326

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           LP     H LRHS+A+ L++ G  +  +Q +LGH  ++TTQ Y ++ S+   + + 
Sbjct: 327 LP-DLRLHDLRHSYASTLINAGVSIYEVQKLLGHSHIATTQRYAHLASERLHETVK 381


>gi|317505696|ref|ZP_07963590.1| integrase [Prevotella salivae DSM 15606]
 gi|315663187|gb|EFV02960.1| integrase [Prevotella salivae DSM 15606]
          Length = 406

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/320 (20%), Positives = 135/320 (42%), Gaps = 33/320 (10%)

Query: 14  LLKERQNWL----QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT--IRQLS 67
           LL+    +L    + + I+R L    L++Y+      L  L  Y ++K  +    + QL 
Sbjct: 110 LLESFGEYLTQTKERVGIDRALKTFKLRTYQ------LSLLREYVQKKHRVSDVPLSQLD 163

Query: 68  YTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
              I  F       +K+   S+  ++S +++ ++   K+ +      L   + ++    P
Sbjct: 164 KAFIEGFEYYLTIDRKLKRSSISSTVSTLQTIVRMAVKKGVLDFYPFLGY-SYERPKGEP 222

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARN-SAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           R++ +++   ++D        E KW + R    +       GL IS+  +L  +NI+ ++
Sbjct: 223 RSITQEELEHIIDL-------EIKWENYRIVRDLFVFSCFSGLAISDVRNLREENIVLEE 275

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             L I+G+  K +    +  +  A+                +P             +F  
Sbjct: 276 GELCIKGRRMKTKTPYRVQVLPPALEIMNRYRGIRAGFVFDVP----------TTDIFLN 325

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            +  ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQIY  V+S+
Sbjct: 326 GMHHIQRNIGMKTPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAVVSSE 385

Query: 305 NGGDWMMEIYDQTHPSITQK 324
                M ++  +   + T K
Sbjct: 386 RIHRDMQKVQQRIQDTFTLK 405


>gi|134101615|ref|YP_001107276.1| phage integrase family site specific recombinase [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133914238|emb|CAM04351.1| site-specific recombinase, phage integrase family
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 316

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 100/268 (37%), Gaps = 11/268 (4%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQ---LSYTEIRAFISKRRTQKIGDRSLKRS 91
           T  +Y     Q   +LA +  +            ++   I AF +     +    ++ + 
Sbjct: 34  TRYNYVLAAAQLARYLAEHAPDPEADAAAEDPAEVAKAHIEAFQAWMIETRSAATAVNKH 93

Query: 92  LSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
              ++   K+ +   +    S +  +R  K    L   L E+    L++           
Sbjct: 94  -KALQQLFKWLMLDEEEIDRSPMERVRLPKAPTKLVPVLEEEATTRLLEVC-----KGKD 147

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
           ++  R+ AI+ L    G R++E   L  +++     ++ + GKG K+R V +     +A+
Sbjct: 148 FLSLRDQAIIRLFCNTGARLAEVAHLRLEDVDLKTESVTLYGKGGKVRRVRMGARTARAL 207

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
             Y          ++         G+ LN    +  +++L +  GL     AH  RH++A
Sbjct: 208 SRYLRARAKRKGADLPNLWLADRGGQALNANGIKIRLKRLGQRAGLD-HVHAHRWRHTYA 266

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIY 298
                 GGD   +  +LG    +  + Y
Sbjct: 267 HQWKRAGGDTGDLMLLLGWSSDAMPRHY 294


>gi|266622075|ref|ZP_06115010.1| putative INTEGRASE/RECOMBINASE XerD [Clostridium hathewayi DSM
           13479]
 gi|288866224|gb|EFC98522.1| putative INTEGRASE/RECOMBINASE XerD [Clostridium hathewayi DSM
           13479]
          Length = 296

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 60/305 (19%), Positives = 119/305 (39%), Gaps = 40/305 (13%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +   N+ + L   R  S+ T++ Y    ++F+  +   + +K ++   +Q        
Sbjct: 13  MEETIDNYCEWLAG-REKSEGTIRKYRYYLQKFMEHMNGRSVDKGSLLIWKQYLRNH--- 68

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL----PRAL 129
                    +   ++  +L+ +  F ++ +            +R LK + S      R L
Sbjct: 69  ---------LAPITVNGALTALNGFFRFYRWED-------CEVRFLKITTSPFSQESREL 112

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           ++++ L LVD      +            +L  +   G+RISE   +T + +   ++ + 
Sbjct: 113 SKEEYLRLVDAAFRKGNERLS-------LLLQTVCSSGIRISELKYVTVEAVQKGKAEIE 165

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
            +G   +IR V L   +   + EY           +Q  +F   RG  L+     R ++ 
Sbjct: 166 CKG---RIRTVLLTRQLCNMLAEYAKRKGI-----MQGMIFITRRGNALDRSNIWREMKA 217

Query: 250 LRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           L    G+       H LRH FA        DL  +  ILGH  ++TT+IYT  +      
Sbjct: 218 LSMAAGVESDKIFPHNLRHLFARTYYEIEKDLSKLADILGHSDVNTTRIYTKESGTRHRQ 277

Query: 309 WMMEI 313
            + ++
Sbjct: 278 QLEKL 282


>gi|257451926|ref|ZP_05617225.1| integrase/recombinase [Fusobacterium sp. 3_1_5R]
 gi|317058477|ref|ZP_07922962.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           3_1_5R]
 gi|313684153|gb|EFS20988.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           3_1_5R]
          Length = 333

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 128/298 (42%), Gaps = 22/298 (7%)

Query: 32  SKLTLQSYECDTRQFLIFL----AFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDR 86
           S  TLQ Y    + FL F+      + +E+I +  ++ +   ++  +I+   + + +   
Sbjct: 33  SPKTLQDYLFYLKDFLSFVYDGDGSFQQEEI-LPLMKGIEKEDVEQYIAHLLQERNMKKT 91

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL--NEKQALTLVDNVLLH 144
           S+ + +S +KS  K  +  +   E+    ++  K + +L   L  +      +++   + 
Sbjct: 92  SVNKVVSAMKSLYK--ELEQYQVENPFRYVKLFKTTRNLDNILKISSNDIKKIIEQFQVK 149

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVP 201
           +       D RN  ILY LY  G+R  E L +  +++M+ + +  ++    K  + +  P
Sbjct: 150 SEK-----DYRNLMILYTLYYTGMRSDELLHMEFRHLMNREGSYFLKLEKTKSGREQYKP 204

Query: 202 LLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG--LP 257
           L P++ + + EY       + L        F        N  +  R +  L + LG  + 
Sbjct: 205 LHPALMEKLQEYKKEMKALYQLEEEDLQNHFVFCSHFDKNKALSYRALYDLIKSLGLSIE 264

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
              + H +RH+ AT L  NG DL  I+  LGH     T+IY N  S      + +I D
Sbjct: 265 KDMSPHNIRHAIATELSLNGADLVEIRDFLGHADTKVTEIYINAKSILEKRVLNKIPD 322


>gi|115376183|ref|ZP_01463426.1| transposase [Stigmatella aurantiaca DW4/3-1]
 gi|115366833|gb|EAU65825.1| transposase [Stigmatella aurantiaca DW4/3-1]
          Length = 385

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 102/255 (40%), Gaps = 36/255 (14%)

Query: 72  RAFISKRRTQKIGD---RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           RA I KR+  +      +++   LS +   L   ++ K+  ++  + +   K        
Sbjct: 126 RAAIGKRKDGEAKPLSLKTINNVLSALSKLLNLAEEXKVIKQAPRVKLFG-KLPKPKFDF 184

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L  ++A  L+D      + E +W       ++ +    GLR  E + L   ++   +  +
Sbjct: 185 LTFEEAGRLID------AAEPEW-----RTLMLVALKTGLRQGELIGLQWADLDLSRGMV 233

Query: 189 RIQG----------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
            ++           KG + R V L  S  +A+  +  L            +F    G+PL
Sbjct: 234 TVRRTIWRGVTDLPKGGRERTVDLPASAVEALKAHRHLRGR--------FVFCQDDGQPL 285

Query: 239 NPGVFQRYIRQLRRYLGLPL---STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             G   + +R+  +   +         H LRH++A+HL   G  L+ IQ ++GH  +  T
Sbjct: 286 TAGKTAQPLRRALKMADIGREEGRIGWHDLRHTYASHLAMKGIPLKVIQELMGHVTIEMT 345

Query: 296 QIYTNVNSKNGGDWM 310
           + Y +++     + +
Sbjct: 346 ERYAHLSPDTRREAV 360


>gi|163736010|ref|ZP_02143436.1| tyrosine recombinase [Roseobacter litoralis Och 149]
 gi|161390735|gb|EDQ15078.1| tyrosine recombinase [Roseobacter litoralis Och 149]
          Length = 153

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/146 (32%), Positives = 76/146 (52%), Gaps = 1/146 (0%)

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           +RISE  +L  +++  D   + +QGKG K RIV +     +   + Y     D + +I  
Sbjct: 1   MRISELTNLKVRDVSPDSGQILVQGKGSKERIVFVPNRELQEKFQRYCQARSD-DGSITS 59

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           PLF    G+ L    F++ +R L + LG+    T H  RHS AT L+  G D+R +Q++L
Sbjct: 60  PLFLNTEGRRLRSATFRKRLRTLSKRLGIEPHLTPHRFRHSAATLLIEEGIDIRIVQALL 119

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH  L TT+IY  V++      +  +
Sbjct: 120 GHANLKTTKIYVRVSNHALRRALERV 145


>gi|229552222|ref|ZP_04440947.1| site-specific tyrosine recombinase XerS [Lactobacillus rhamnosus
           LMS2-1]
 gi|229314408|gb|EEN80381.1| site-specific tyrosine recombinase XerS [Lactobacillus rhamnosus
           LMS2-1]
          Length = 358

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 64/338 (18%), Positives = 134/338 (39%), Gaps = 44/338 (13%)

Query: 32  SKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ---- 81
           +  TL  Y    ++FL +L         + + + ++T+ +LS  + +AF++    +    
Sbjct: 22  ADSTLYQYLHFYQEFLHWLISSRVTDAISPQNVPLETLERLSLRDAQAFVAYLLERPSKT 81

Query: 82  ----KIGDRSLKRSLSGIKSFLKYLKKR-------------------KITTESNILNMRN 118
               ++  RS+   L GIK+  ++L +                    K+ T +     RN
Sbjct: 82  HPNKRMTRRSVALRLVGIKALYRFLTEESEPNADGEPYFYRNVWNKVKLKTHAETTTYRN 141

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID-----ARNSAILYLLYGCGLRISEA 173
            K    L     + + L  +D                    RN AI+ LL+G G+R+SE 
Sbjct: 142 HKLQEMLFVDGEDARFLQWLDQQYAQQLPSKPRAYFEATKERNLAIIALLFGSGVRVSEL 201

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFR- 231
           +++  +++  D+ T+++  KG+    V     +   +  Y       +       PLF  
Sbjct: 202 VNMNLEDLNMDRHTVQVVRKGNFQDRVNFADWIDPYLTAYLKSRTAMIGQQKPTSPLFVT 261

Query: 232 --GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
             G     +     + + ++     G    +T H  RH+  T++ +   D++ +   LG 
Sbjct: 262 QIGQMVNRIRQNTIEAFFKRYTTAYG--RPSTPHKARHTLGTNIYTVTKDVQQVADQLGQ 319

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
              S T +Y N++ K+G   + E+ +    ++ Q  ++
Sbjct: 320 TTTSATDLYINLSDKSGKAALREVSETAAKALDQHPQQ 357


>gi|218892832|ref|YP_002441701.1| putative bacteriophage integrase [Pseudomonas aeruginosa LESB58]
 gi|218773060|emb|CAW28872.1| putative bacteriophage integrase [Pseudomonas aeruginosa LESB58]
          Length = 338

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 63/295 (21%), Positives = 120/295 (40%), Gaps = 43/295 (14%)

Query: 29  RGLSKLTLQSYECDT---------RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           R LS+L  + YE            +  L+ +A    + +     ++ +  ++ AF  +  
Sbjct: 58  RLLSELIERWYELHGHSITSGRRRKNLLLLIASRLGDPVG----QRFTTADLVAFRKREL 113

Query: 80  TQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            +    RS+    S +K+ F +  +   I   + +  ++ LK   S+   L++ Q   LV
Sbjct: 114 EEGALPRSINVRYSYLKTVFTELRRLGDIDYPNPLDRLKPLKPQQSVVSFLSKDQVAVLV 173

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                 ++          + I  +    G R SEA  LT   ++ D S +    K  ++R
Sbjct: 174 ------SALRDYSTFPHLALISEVCLATGARWSEAQGLTLP-MVRDGSVVFSNTKSKRVR 226

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-- 256
            VP+   ++  + +Y                F G    P     F R +    +  G+  
Sbjct: 227 SVPISTDLQARLEKY----------------FAGRNRFPSCREAFARMV----KRCGIVL 266

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           P     H LRH+FA+H + NGG++ +++ ILGH  L+ T  Y +++ +   D + 
Sbjct: 267 PRGQCTHVLRHTFASHFMMNGGNILALKEILGHSSLNMTMRYAHLSPEYLRDAIR 321


>gi|229006821|ref|ZP_04164454.1| Integrase/recombinase [Bacillus mycoides Rock1-4]
 gi|228754443|gb|EEM03855.1| Integrase/recombinase [Bacillus mycoides Rock1-4]
          Length = 322

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 60/337 (17%), Positives = 124/337 (36%), Gaps = 44/337 (13%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQN-----LEIERGLS------------KLTLQSYECDT 43
           M        VS +L    +  L+      L IE+ LS            + T+  YE   
Sbjct: 1   MSKKRDSLTVSEDLSNVFERKLERKHLNGLAIEKALSTVIRQMRATGLRERTISDYELHI 60

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
             F+             Q +++L+   I +++S      + +++    L  +K+FL    
Sbjct: 61  GHFMSV--------TGAQFLQELTVNHIYSWLSSM---NVSNQTKLTRLKCLKAFLGRCF 109

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
                  +   +++ +K  + +     +++   L+  + L     T++I+ R++  + L+
Sbjct: 110 DNGWIEVNFWKSVK-IKVDSPVKEGATDREINLLLSMLDL-----TRFIELRDAVSVLLM 163

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGK--GDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           Y  G+R+     L  +++  +   LRI G    +   I      V   +L         +
Sbjct: 164 YQTGIRVGTLSQLENKHVNLENKVLRIDGGILKNHESIHLPFDDVLARVLYALMKQNDII 223

Query: 222 NLNIQ---LPLFRGIRGKPL----NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
               +     LF    G  +          + + +  R  G   +   H LR  FA +LL
Sbjct: 224 RKECRVKNDYLFITKNGGRIATSPTNNNVTKRLSKHARDYGF-KNINPHALRRGFAKNLL 282

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             G ++  I   LGH  L+ T  Y +++ +   + + 
Sbjct: 283 KKGANIALISKALGHSDLAVTTRYLHLDKEEVAESLR 319


>gi|295105004|emb|CBL02548.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 384

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 58/317 (18%), Positives = 121/317 (38%), Gaps = 39/317 (12%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + + ++RGL   +L+SY    ++          +    + I+ +  ++ + +        
Sbjct: 77  RYMNLKRGLKPNSLRSYNTAVKR-------IHADPFGQKAIKTVKLSDAKGWFVFLHDSG 129

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
               ++    S ++   +   +  I  ++        K S+ +P+    + ALT      
Sbjct: 130 FKQNTIGILQSVVRPAFEMAVEDDIIRKNPF----KFKLSDVVPKDAYVRDALTREQQEK 185

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----------- 191
                +    +  +   + +L G GLR+SE   LT  +I  ++  + ++           
Sbjct: 186 YLQFVQDYGGNYYDD--IVILIGTGLRVSELYGLTRADIDFERHCIHVRRQLCRTAEKPY 243

Query: 192 -----GKGDKIRIVPLLPSVRKAILEYYDLC----PFDLNLNIQLPLFRGIRGKPLNPGV 242
                     IR VP+  +V  A+              L       LF    G P     
Sbjct: 244 FVTPPKTKSGIRNVPMTDTVCAALRRVVKARASTKVEALVDGCSGFLFLDKSGMPKVAMH 303

Query: 243 FQRYIRQLR----RYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
            + Y+R ++    +  G P+   T H LRH+F T++   G D++S+Q ++GH   S T  
Sbjct: 304 LENYMRGVQGKFEKAYGKPVPRVTPHVLRHTFCTNVQQAGLDVKSLQYLMGHSNASVTLD 363

Query: 297 IYTNVNSKNGGDWMMEI 313
           +YT+ + ++      +I
Sbjct: 364 VYTHSSFESVERAFEQI 380


>gi|258653763|ref|YP_003202919.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258556988|gb|ACV79930.1| integrase family protein [Nakamurella multipartita DSM 44233]
          Length = 638

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/326 (20%), Positives = 113/326 (34%), Gaps = 39/326 (11%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGL-SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           LPE     +    + +L+ L +E       T++      R+ + +LA    E   I  +R
Sbjct: 258 LPEPCPPAIRAVVERYLR-LRLEAKFDRPQTVRLTREGLRRLVNWLAKVHPE---ITNLR 313

Query: 65  QLSYTEIRAFISKR-------RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILN 115
           QL  + I  ++            Q +   ++  ++S + +F +       T      ++ 
Sbjct: 314 QLDRSLIEDYLQWLPGCLSQQTGQPLTPSTVASAISAVGAFCRDTAVWGWTDVPGRPLVT 373

Query: 116 MR-NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            R   K+   LPR L   +   ++  +           D    A L LL   G R  E  
Sbjct: 374 TRDTPKQPKPLPRFLPADELAAIMTAIDALA-------DPAQRAALLLLRWSGARRDEIR 426

Query: 175 SLTPQNIMDD---QSTLRIQ-GKGDKIRIVPLLPSVRKAIL--------EYYDLCPFDLN 222
            LT   +  D      LRI  GK    RIVPL P    A+         +          
Sbjct: 427 RLTWDCLDHDLHGNPRLRIPVGKSYTERIVPLHPDAAAALRGAITAAKAQNAIARHDQHA 486

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-----PLSTTAHTLRHSFATHLLSNG 277
                 +F           +F    R +    GL         +AH  RH+  T L   G
Sbjct: 487 SRAVNYVFMRHGKLLSKTTLFDDAFRTVCGAAGLLDAHGVPKVSAHRFRHTLGTQLAEGG 546

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNS 303
             +++I +ILGH     + +Y+ ++ 
Sbjct: 547 ARIQTIMAILGHRSAEMSLVYSRISD 572


>gi|167896302|ref|ZP_02483704.1| integrase/recombinase [Burkholderia pseudomallei 7894]
          Length = 320

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 110/276 (39%), Gaps = 22/276 (7%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T ++Y      FL + A        + +I  +    + +++ + +T+     ++K  L
Sbjct: 38  PHTRRAYARAASDFLTWCA-----DAGVSSITAVQPLHVASWV-ELQTRTHAASTVKLRL 91

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSL---PRALNEKQALTLVDNVLLHTSHET 149
           + I+    +L   ++   ++  ++R+   +      P  L+  +A  L+D++ + T    
Sbjct: 92  AAIRHLFDWLVTGQVVPVNSAASVRSPSHTVRTGATP-VLDPAEARQLLDSIDVSTP--- 147

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVR 207
             I  R+ A++ L+     RI  AL++   ++   Q    +R++  G K   +P   ++ 
Sbjct: 148 --IGLRDRALIALMVFSFARIGAALAMRVDDVYVQQRRLWIRLRETGGKAHAMPCHHTLE 205

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-----YIRQLRRYLGLPLSTTA 262
            A+  Y D      +    L          L+     +      +R+     G+     +
Sbjct: 206 MALRAYLDGTGIVFDPKGALFRTIARGTGQLSETTLAQANAYVMVRRRAAAAGIATKIGS 265

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           H LR +  T  L NGG L +  +I  H    +TQ Y
Sbjct: 266 HALRATGITTYLRNGGTLENAAAIANHVSTRSTQRY 301


>gi|319788822|ref|YP_004090137.1| integrase family protein [Ruminococcus albus 7]
 gi|315450689|gb|ADU24251.1| integrase family protein [Ruminococcus albus 7]
          Length = 359

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 62/305 (20%), Positives = 112/305 (36%), Gaps = 33/305 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            WL  L ++  + + TL++Y    ++       +            +   EI  F++ + 
Sbjct: 69  EWL--LSVQNRVKESTLENYRLKLKK-------HIIPSFGAMNCCAVGSKEIYGFMNAKI 119

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +  R +   L  +KS  KY   R+   ++    +   KK +   R L + +     +
Sbjct: 120 GNGLSSRYVSDILVLMKSMFKYAA-REYGFKNVFDGITMPKKQSKEVRLLTKDE-----E 173

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           N L     E   +     A+   +Y  GLR+ E  +LT  +I  D  TL ++    +I+ 
Sbjct: 174 NKLKSYITEKPTLAGMGIAL--TMY-TGLRVGELCALTWADIDLDYRTLTVKKTMQRIQN 230

Query: 200 VPLLPSVRKAILE-------------YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
                  +  I E                +                 + KP+ P   Q  
Sbjct: 231 HEGGGKTKLIISEPKSEKSRRIIPIPECMIEMLRSFKADDGCFLLTGKDKPMEPRAMQYR 290

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI-YTNVNSKN 305
             +L + LGLP     H LRH +A+  +  G D++++  ILGH  +  T   Y + N + 
Sbjct: 291 FSRLLKKLGLP-HIHYHALRHGWASRAIELGFDVKTLSEILGHSSVELTMRLYVHSNFER 349

Query: 306 GGDWM 310
               M
Sbjct: 350 KRACM 354


>gi|255013631|ref|ZP_05285757.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 367

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/272 (18%), Positives = 101/272 (37%), Gaps = 32/272 (11%)

Query: 48  IFLAFYTEEKITIQTIRQLSYTEIRAFISKR------RTQKIGDRSLKRSLSGIKSFLKY 101
             L  Y  E+ T   + Q+  T    +I         + + +   +           L  
Sbjct: 111 DILKEYAGERFT---LNQVDLTFCHGYIDYMLTSYRPKGKPLSASTRNTYYQIFNGALNA 167

Query: 102 LKKRKITTESNILNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
             + K   ++    M      K   S+   +  ++  +L+   + +   ++ ++ +    
Sbjct: 168 AVRAKRILKNPFNEMEKSEKPKMPESVRSYMTIEEVRSLIATPMQNEGVKSAYLFSC--- 224

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
                  CGLRIS+ + L  +N+  D    R+     K +    LP   +A+    +   
Sbjct: 225 ------FCGLRISDIIGLQWKNVFIDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPERGD 278

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
              + ++              P    + I+   +  G+    T HT RH+FAT +L+ G 
Sbjct: 279 KTADDHVFDL-----------PSGINQLIKPWAKAAGISKRFTFHTARHTFATMMLTLGA 327

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           DL ++  +LGH  +  TQ+Y  + +K   D +
Sbjct: 328 DLYTVSKLLGHTSVKMTQVYAKIVNKKKDDAV 359


>gi|218442469|ref|YP_002380790.1| integrase [Cyanothece sp. PCC 7424]
 gi|218175240|gb|ACK73971.1| integrase family protein [Cyanothece sp. PCC 7424]
          Length = 304

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 59/297 (19%), Positives = 113/297 (38%), Gaps = 24/297 (8%)

Query: 27  IER-GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           +ER  LS+ T++SYE      L        +++    +  L+  ++  ++S      +  
Sbjct: 13  LERPQLSQNTIRSYESTLMPLL--------QQLGSVKVDLLTRQQLIEYLSGLTH--LSY 62

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--------PRALNEKQALTL 137
            +  R  + ++S L +  ++   T + +  +++ K              R LN +Q   L
Sbjct: 63  TTYNRHQAILQSLLNFAVEQGFLTSNPLSGLKSRKPDREKGEHSSDEPIRYLNPEQIAVL 122

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                L   +  K    R   ++ LL+  G RI+E L+L  + I       ++ GKG+K 
Sbjct: 123 ---YRLLKENSYKPQIYRLQTLVTLLHRTGARIAEILALDLEEIDLKNRRFQVIGKGNKQ 179

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR-GIRGKPLNPGVFQRYIRQLRRYLGL 256
           R       V K +  Y     +  +  +             L+     R    L     +
Sbjct: 180 RWCFYSDDVAKILEIYLKHYRYTEHSALFTAQQPLSKEVSRLSYRTAYRDWSNLIAKSPV 239

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                 H LRH+FAT  +   G +  +++++GH  + TT  Y  V S    +   + 
Sbjct: 240 LKGFRLHDLRHTFATERVGLMG-IEELRALMGHENIQTTLRYQKVTSSRAEEVAQKA 295


>gi|260437997|ref|ZP_05791813.1| site-specific recombinase, phage integrase family [Butyrivibrio
           crossotus DSM 2876]
 gi|292809594|gb|EFF68799.1| site-specific recombinase, phage integrase family [Butyrivibrio
           crossotus DSM 2876]
          Length = 269

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/300 (17%), Positives = 110/300 (36%), Gaps = 35/300 (11%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +K +Q + + L  +  LS  T+ SY      F                   ++   + A+
Sbjct: 1   MKAKQTFEEYLR-KGNLSGNTITSYLWTVNYFTDHY-------------DTVNKENLLAY 46

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
                      +++   +  I  +L+YL K K+T       ++ +K        L  +  
Sbjct: 47  KGYLMEF-FKPKTVNLRIQAINKYLEYLGKAKLT-------LKAVKVQQK--NFL--ENV 94

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           ++  D + L    +          +++ L   G R+SE + +  ++I  +     +  KG
Sbjct: 95  ISNADYIFLKKQLKKDGNMEW-YFVVWYLAATGARVSELIQIKIEHI--EIGYFDLYTKG 151

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K+R + +   ++K  LE+      +        LF    G  +      + ++      
Sbjct: 152 GKLRRLYIPQKLKKETLEWL-----EETNRSSGYLFLNRYGDRITTRGISQQLKNYADKY 206

Query: 255 GLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GL       H+ RH +A + L    D+  +  ++GH  + TT+IY    +      + +I
Sbjct: 207 GLDKKVVYPHSFRHRYAKNFLEKYSDIALLADLMGHESIETTRIYLRRTASEQQALVDKI 266


>gi|163733376|ref|ZP_02140819.1| phage integrase family protein [Roseobacter litoralis Och 149]
 gi|161393164|gb|EDQ17490.1| phage integrase family protein [Roseobacter litoralis Och 149]
          Length = 412

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 68/305 (22%), Positives = 121/305 (39%), Gaps = 18/305 (5%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E  S ++ K  + WL     ERGL+  ++++   + R F  +    T +        +LS
Sbjct: 108 EQRSRDVCKVYERWL---RTERGLATPSIKALMWEARHFCKWFIARTGK----ADFAELS 160

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSL 125
             +I A++  R    +  +SLK     ++ FL++L + K+  +    ++          +
Sbjct: 161 VPDIDAYLDSRAP-GLTRKSLKDVAERLRGFLRHLHRSKLHGQDLSSHVIAPLLYAYEGI 219

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P  L  +Q      NVL     +   +  R+ AIL LL   GLR  E   L   +I    
Sbjct: 220 PSILTPEQIA----NVLKVAGQDVSPLGLRDHAILQLLAKYGLRSGEVGRLQIDDIDWRA 275

Query: 186 STLRIQGKGDKIR-IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
            TLR+Q      R ++PL+ +V  AIL Y        ++     L      + +  G   
Sbjct: 276 DTLRVQRSKSNTRAVLPLMETVGDAILRYLREGRPRTDVRTVF-LRSRAPYQAMTAGGLY 334

Query: 245 RYIRQLRRYLGLPL--STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             +++     G+        H  RH+ A  +L      + I  +LGH     T  Y  + 
Sbjct: 335 GVVKRRLAAAGIEPVGKRGPHIFRHARAVSMLRASTPRKIIGDVLGHRSSEATTPYLKLA 394

Query: 303 SKNGG 307
           +++  
Sbjct: 395 TEDLR 399


>gi|312869158|ref|ZP_07729332.1| site-specific tyrosine recombinase XerS [Lactobacillus oris
           PB013-T2-3]
 gi|311095404|gb|EFQ53674.1| site-specific tyrosine recombinase XerS [Lactobacillus oris
           PB013-T2-3]
          Length = 354

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/352 (19%), Positives = 137/352 (38%), Gaps = 42/352 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA------FYT 54
           ME +    ++  EL K   +++    +    +  T   Y  + R+F  +L          
Sbjct: 1   MEADKYLTLIQSELAK-LPDYVNEYYLGTNHAVTTTYQYLTEIRRFFDWLRVSGLTDAQD 59

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRT------QKIGDRSLKRSLSGIKSFLKYLKKRKIT 108
              I+ + + +L   +I  +I   +       +     S+ RS++ ++S  KYL      
Sbjct: 60  NTGISTKALEKLRRNDIMLYIDHLKHTQNAQGRLNSPTSINRSINALRSLFKYLTVTADI 119

Query: 109 TE-------SNILNMRNL-------KKSNSLPRALNEKQA----LTLVDNVLLHTSHET- 149
            +       + +L + +L        ++++L   +   Q     +  + N   H   +  
Sbjct: 120 NDGEPYFYRNVMLKIDSLNDTQTLNYRAHTLSSHMYRGQMKFDFINFIQNEYPHKCDKRA 179

Query: 150 ----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
               K    R+ AI+ L+ G G+R+SEA ++   ++  +Q  L +  KG +   VP+ P 
Sbjct: 180 LPAFKVNRERDIAIIALILGTGVRVSEAANVNLGDLNINQGLLDVVRKGGQRDSVPIAPW 239

Query: 206 VRKAILEYYDLCPFDLN-LNIQLPLFRGIRG---KPLNPGVFQRYIRQLRRYLGLPLSTT 261
             + + +Y  +     + L      F  +     + +     +R +++     G P   T
Sbjct: 240 SIQYVQDYLAIRAQRYHALKKDTAFFLTVYHGETRRMTANAIERMVKKYSTAFGHP--LT 297

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            H LRH+ A+ +     D   +   LG    S T +YT+V      + + EI
Sbjct: 298 PHKLRHTLASEMYEVTKDQVLVAQQLGQKGTSATDLYTHVGVTQQREALDEI 349


>gi|161522422|ref|YP_001585351.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189348702|ref|YP_001941898.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
 gi|160345975|gb|ABX19059.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189338840|dbj|BAG47908.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
          Length = 575

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 124/337 (36%), Gaps = 48/337 (14%)

Query: 16  KERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           KE +  +    +ERG  LS LT +    D   +  FL   T  +  I  +R     + R 
Sbjct: 247 KEAERLILWAIVERGRALSSLTTE----DALAYRAFLRRPTPHERWIGPVRPRGAPDWRP 302

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F     +  +  RS   +LS + +  ++L +++    +    ++   + +    AL+   
Sbjct: 303 F-----SGALSARSAAYALSVLGAMFRWLIEQRYVLANPFAGVKV--RDSRGASALDTSH 355

Query: 134 ALTLVDNVLLHTSHETKWIDARN--------------SAILYLLYGCGLRISEALSLTPQ 179
           A T  + +L+ T  +       +                IL   Y  GLR SE +  T  
Sbjct: 356 AFTEGEWLLVRTIADGLEFRKTDVPAAAWTPAAAQRLRFILDFGYATGLRASELVGATLG 415

Query: 180 NIMDDQS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGI 233
           +I  D      L++ GKG K   V L P  R A+  Y       +         PL   +
Sbjct: 416 DIDTDAHGDAWLKVVGKGSKAARVALPPLARTALDRYLVARRLPVTPVRWRPDTPLISRL 475

Query: 234 RGK---PLNPGVFQRYI-RQLRRYLGLP-----------LSTTAHTLRHSFATHLLSNGG 278
                 P+      + + R   +   L               + H +RH+ ATH L+ G 
Sbjct: 476 TEDGAAPITSVRLWKVMQRFFVQTADLVEADNPALAQKLRQASPHWMRHTHATHALARGA 535

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +L +++  L H  +STT IY + +       +   + 
Sbjct: 536 ELTTVRDNLRHASISTTSIYLHGDDVKRARQLASAFA 572


>gi|261879768|ref|ZP_06006195.1| integrase [Prevotella bergensis DSM 17361]
 gi|270333565|gb|EFA44351.1| integrase [Prevotella bergensis DSM 17361]
          Length = 407

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 112/289 (38%), Gaps = 24/289 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           SK +LQ Y    R F  FL + Y ++ I +         +   ++S          +  +
Sbjct: 129 SKDSLQKYSVLRRHFAEFLIYKYGKKDIGLAEFTPSVVQDFELYLST--AAGCAYNTSVK 186

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L  +K+   Y +KR        LN R   +  +    L +++ + + +  L       +
Sbjct: 187 KLKALKTVTIYAQKRGYLLHDPFLNHRFHLEPVNR-GFLTDEEIMKIANKKL----DIHR 241

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVR 207
               R+  I       GL   +  +LTP NI    D Q  +  + K +    V LL   R
Sbjct: 242 LELVRDVFIFSCF--TGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTNVETNVLLLDIPR 299

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             I +Y      D           G     L       Y++++    G+  + T H  RH
Sbjct: 300 SIIAKYSHKTYRD-----------GKLFPILTNQKTNAYLKEIADICGIKKNLTFHLARH 348

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +FAT  LS G  + S+  +LGH  + TTQIY  + +K     M ++ D+
Sbjct: 349 TFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKVEHDMEQLADK 397


>gi|171741094|ref|ZP_02916901.1| hypothetical protein BIFDEN_00161 [Bifidobacterium dentium ATCC
           27678]
 gi|171276708|gb|EDT44369.1| hypothetical protein BIFDEN_00161 [Bifidobacterium dentium ATCC
           27678]
          Length = 286

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/304 (19%), Positives = 115/304 (37%), Gaps = 38/304 (12%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           PE       +    WL  L    G    T+++       F+ +LA    E         +
Sbjct: 10  PEPFPQTWEQSVDQWLTYLRAA-GRMPSTIKTRRVKLWGFVHYLAGKPPEN--------V 60

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           +  +   ++ +   + +   + K   + + S+  +     + +++  + + ++  S   P
Sbjct: 61  TRADCEKWMGR---EGLSAETRKGIRATLTSYFDWCVDHDLRSDNPAIGLPHVAGSKPHP 117

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--D 184
           R   E      +D            +  R+  ++ L    GLR SE   ++ ++++   D
Sbjct: 118 RPCPETGIREAMDG-----------LSERDRLMVRLGAELGLRRSEIAKVSGRDVVGPAD 166

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
            + LR+ GKGDK R++PL   +   I +                LF       ++     
Sbjct: 167 NALLRVVGKGDKQRLIPLPQDLAVRIRQ-----------TGDGWLFPSRNDHGISHLTAG 215

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R  + +     LP S   H+LRH  AT       DL ++ ++LGH  ++TTQ Y  +  +
Sbjct: 216 RVGKIVGSA--LPQSYGTHSLRHRAATQAYLATHDLLAVSTLLGHSSVATTQRYVAMPPE 273

Query: 305 NGGD 308
               
Sbjct: 274 ELRK 277


>gi|166031463|ref|ZP_02234292.1| hypothetical protein DORFOR_01160 [Dorea formicigenerans ATCC
           27755]
 gi|166028868|gb|EDR47625.1| hypothetical protein DORFOR_01160 [Dorea formicigenerans ATCC
           27755]
          Length = 343

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/323 (14%), Positives = 112/323 (34%), Gaps = 35/323 (10%)

Query: 1   MEG-NNLPEIVSFELLKERQNWLQNLEIER-GLSKLTLQSYECDTRQFLIFLAFYTEEKI 58
           ME   NLP  +     ++ + ++  + I++  L   T   Y     +    +        
Sbjct: 43  MEEITNLPAEIRTSTEEQNRYYISLMMIKKKNLRPETKAQYRDAIMRLTSVIE------- 95

Query: 59  TIQTIRQLSYTEIRAFISKRRTQKIGD-------RSLKRSLSGIKSFLKYLKKRKITTES 111
             + + ++   +I +++     + +          +       + +F  +++K K  + +
Sbjct: 96  --KPLNKMDEIDIDSYLDWYEKRNVAAGGKKNQASTCNNERRYLSAFFTWMRKEKFMSYN 153

Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
            +     +K+           Q   L +            +  R+ AI+ +L   G R+ 
Sbjct: 154 PVEATEPMKEVIKPIDYFRPAQIEQLREGC----------VSLRDRAIIEVLRSTGARVG 203

Query: 172 EALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
           E   +   ++      + I   K  K R++ L    R  + +Y D    D   N  L ++
Sbjct: 204 EIPQINIDHVDWATGDIMIMSEKSYKYRLLYLDEVARYHLRKYLDSRTDD---NEALFVW 260

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
                  L     +  ++++ +   +      H LR +   +L   G D+  IQ ++GH 
Sbjct: 261 DKAPYNRLKKSGIRNAMKEVGK--NMDCKVYPHKLRKTLGVNLKDKGTDIGIIQEVMGHA 318

Query: 291 RLSTTQI-YTNVNSKNGGDWMME 312
             + T   Y  ++ +   D    
Sbjct: 319 NPTVTSRYYAQISPEAMRDVRRR 341


>gi|229029889|ref|ZP_04185958.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus AH1271]
 gi|228731397|gb|EEL82310.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus AH1271]
          Length = 378

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 114/302 (37%), Gaps = 35/302 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
             ++L + SYE D    +  +  Y     + + I+ +    I+++ ++ + + + + ++ 
Sbjct: 76  RKAELKITSYEKD----MSLVKLYILPPFSYKKIKSIKPVMIQSYYAELKEKGLSNGTIS 131

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
                ++   K+  + +I  ++ +  ++  ++     +  + ++    +  +        
Sbjct: 132 NIHRCLRCIFKHAVEWEIIHDNIMNKVKKPREEQGEMKTWSSEECNRFLQYL-------- 183

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---------------GKG 194
           K  + +      L    G+R  E L+LT ++I  D   + +                   
Sbjct: 184 KEKNIKYHMFFLLAIYTGMRRGELLALTWKDIDFDNKRILVNKSLVKTEKGLFKAAIKTK 243

Query: 195 DKIRIVPLLPSVRKAILEYYDLC-----PFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIR 248
              R + +   V   +  YY         + ++LN +  +F G     PL+     R++ 
Sbjct: 244 SSNRSISISSFVIGKLQSYYSYKKKEFFRWGIHLNEEAYIFTGNTIHSPLHIDAPHRFLN 303

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGG 307
              +  G+P     H LRH+ AT +L  G   + +Q  LGH  +  T   Y+++      
Sbjct: 304 DHYKKAGVPR-IRIHDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQNMQQ 362

Query: 308 DW 309
             
Sbjct: 363 QA 364


>gi|317503724|ref|ZP_07961739.1| integrase [Prevotella salivae DSM 15606]
 gi|315665149|gb|EFV04801.1| integrase [Prevotella salivae DSM 15606]
          Length = 362

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/276 (19%), Positives = 101/276 (36%), Gaps = 14/276 (5%)

Query: 46  FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR 105
              F+       I I++I +  + E R F+   + + +   ++   L  +   +     +
Sbjct: 81  LCEFIKDLGSTDIEIRSITEELFEEYRFFL---KKKGLKGSTINNYLCWLSRLMFRAVSQ 137

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
           +I   +   +    K   ++ R L++     L+   +  +  +          +      
Sbjct: 138 RIIRYNPFEHAEYEKVEKAI-RFLSKSDVKKLMAMKMWDSDAKLA------RRMFIFSCF 190

Query: 166 CGLRISEALSLTPQNIM---DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
            GL I++   L   +I    D Q  +R  + K     IVPL P V+  I +   L     
Sbjct: 191 TGLAIADMEHLKFGHIKSAADGQMYIRKERQKTKVEFIVPLHPIVKTIIEQQRQLKAVKE 250

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
             N      R I     +  V    +  + +  G+      H  RH+F T  LS G  + 
Sbjct: 251 ESNNTNMDNRLIFQPCCSRSVLAAKLSIVGKACGIKQRLCYHMGRHTFGTMCLSAGIPIE 310

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           SI  ++GH  +++TQIY  V      + M  +  + 
Sbjct: 311 SIAKMMGHASIASTQIYAQVTDCKMSEDMDRLIAKH 346


>gi|282881006|ref|ZP_06289696.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305082|gb|EFA97152.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
          Length = 407

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/289 (22%), Positives = 112/289 (38%), Gaps = 24/289 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           SK +LQ Y    R F  FL + Y ++ I +         +   ++S          +  +
Sbjct: 129 SKDSLQKYSVLRRHFAEFLIYKYGKKDIGLAEFTPSVVQDFELYLST--AAGCAYNTSAK 186

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L  +K+   Y +KR        LN R   +  +    L +++ + + +  +     E  
Sbjct: 187 KLKALKTVTIYAQKRGYLLHDPFLNHRFHLEPVNR-GFLTDEEIMKIANKEIAIQRLEL- 244

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVR 207
               R+  I       GL   +  +LTP NI    D Q  +  + K +    V LL   +
Sbjct: 245 ---VRDVFIFSCF--TGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTNVETNVLLLDIPK 299

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             I +Y      D           G     L       Y++++    G+  + T H  RH
Sbjct: 300 SIIAKYSHKTYRD-----------GKLFPILTNQKTNAYLKEIADICGIKKNLTFHLARH 348

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +FAT  LS G  + S+  +LGH  + TTQ+Y  + +K     M ++ D+
Sbjct: 349 TFATMSLSKGVPMESVSKMLGHTNIKTTQLYARITNKKVEHDMEQLADK 397


>gi|94266129|ref|ZP_01289843.1| Phage integrase [delta proteobacterium MLMS-1]
 gi|93453304|gb|EAT03747.1| Phage integrase [delta proteobacterium MLMS-1]
          Length = 465

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/271 (21%), Positives = 108/271 (39%), Gaps = 21/271 (7%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           ++ Y+   +    +L  +       Q + Q+   E+       + +     +  R +  +
Sbjct: 200 VKGYKRSWKSDFGYLKNHLLPLFGNQHLDQIKQAEVIELHHGMKARGYALATCNRQVILL 259

Query: 96  KSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
           +      +K KI     +    +   + +N   R L E +A  L   +    + + K+  
Sbjct: 260 RYIFNLARKWKIPGADNNPTTGVALFEANNGRERYLTEDEAARLKAALESSENTQLKY-- 317

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILE 212
                I+ LL   G R SE L+   ++    + + RI   K  K R VPL  +  + +  
Sbjct: 318 -----IVSLLLLLGCRKSELLNSRWEDFDLARRSWRIPLSKSGKARYVPLSTAALEVLAS 372

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
              L P+ +     L  F              R     R+  GLP     H LRHSFA+ 
Sbjct: 373 IPRLSPYVVPNPKTLQPFVS----------VFRSWDTARKKAGLP-DVRMHDLRHSFASF 421

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           L+++G  +  +  +LGH +L TTQ Y+++++
Sbjct: 422 LVNSGRSIYEVSQLLGHSQLKTTQRYSHLSN 452


>gi|288561495|ref|YP_003428901.1| transposition regulatory protein TnpA [Bacillus pseudofirmus OF4]
 gi|288548127|gb|ADC52009.1| transposition regulatory protein TnpA [Bacillus pseudofirmus OF4]
          Length = 368

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/340 (17%), Positives = 127/340 (37%), Gaps = 61/340 (17%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +++ L+  RG S  T ++Y    +++  FL             + +   ++  FI+  R
Sbjct: 19  KYIKYLDT-RGKSPNTQKTYCYALKEYFTFLEDVN------LGYKDVRLEDLVDFIAWLR 71

Query: 80  --------------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN---LKKS 122
                           +  + ++   L+ +  F  YL + +   ++ +  +      K +
Sbjct: 72  NPYGINKAVPLQPTEARKKENTINLILTAVNGFYDYLYRNEELDKAMVDLVTKEQLFKGA 131

Query: 123 NSL------------PRALNEKQALTLVDNVLLHTSHETKWI-----DARNSAILYLLYG 165
                          P   N  +       + + +  E + +     + R+  ++  LY 
Sbjct: 132 KRAYRDFLYHVNQNSPSHKNVLRVKKRKVKLKVLSKMEVEMLYNGATNIRDKLLIQTLYE 191

Query: 166 CGLRISEALSLTPQNIMDDQ-STLRIQ-----------GKGDKIRIVPLLPSVRKAILEY 213
            GLRI E LSL  ++ + D     RI+                 R + +  S+   + +Y
Sbjct: 192 TGLRIGELLSLFIEDFIFDHKGGHRIKLVDRGELENGAKLKTSEREIYVSQSLMDLLDDY 251

Query: 214 YDLCPFDLNLNIQLPLFRGIR----GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
                 DL+++    +F  ++    G P+N        ++LR+   +      H LRH+ 
Sbjct: 252 LYEVIDDLDIDTNF-VFVKLKGKNIGHPMNYQNVSALFKRLRKK--VKFKVHPHLLRHTH 308

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
           AT      GD++ +Q  +GH ++ TT   Y + + ++  +
Sbjct: 309 ATMYYRQTGDIKQVQERIGHSQIQTTINFYLHPSEEDIRN 348


>gi|228967125|ref|ZP_04128161.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228792494|gb|EEM40060.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 141

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 5/140 (3%)

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +   +      ++L R ++ I+SF ++L + +       +++   +    LP+ L+  + 
Sbjct: 1   MQYLKENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEV 60

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L     L T   T     R+ A+L LLY  GLR+SE ++L  +++      +R  GKG
Sbjct: 61  EAL-----LQTPKMTSAFGIRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKG 115

Query: 195 DKIRIVPLLPSVRKAILEYY 214
           +K RI+PL     +AI +Y 
Sbjct: 116 NKERIIPLGSLATEAIQKYI 135


>gi|24217183|ref|NP_714666.1| site-specific integrase/recombinase XerD-like protein [Leptospira
           interrogans serovar Lai str. 56601]
 gi|45655681|ref|YP_003490.1| phage-related integrase/recombinase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24202229|gb|AAN51681.1| XerD-related integrase [Leptospira interrogans serovar Lai str.
           56601]
 gi|45602652|gb|AAS72127.1| phage-related integrase/recombinase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 299

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/299 (19%), Positives = 120/299 (40%), Gaps = 34/299 (11%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           +R   K T  +Y      FL F           +   +++  ++  ++   + +K+   +
Sbjct: 23  QRNYKKATAYTYMKYNLDFLHFAD---------KPAEKITVKDLNRYMDHLKKRKVSSST 73

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           ++ ++S +K F        +   +   + +   +  + P A+  K+   ++     +  H
Sbjct: 74  IQINVSSLKMFF-----EDVMKMNLFQDFQRPVREYNNPNAITYKEMQNILKTASSNAKH 128

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
           E          +  L+Y  GLR+ E +SL    I   + +++I+           +P   
Sbjct: 129 E---------LMCGLVYFGGLRVGELISLRWAYIDTKRKSIQIKSPILSQSRTVEIPVEL 179

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            A+++ Y+     +N +    LF G   G        +R I ++ +  G+    T  TLR
Sbjct: 180 GALVKKYEREI--VNSSSNTYLFPGKSLGSHTTSRNVERIISEIGKNSGISSPVTVFTLR 237

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIY--------TNVNSKNGGDWMMEIYDQT 317
           HS A HL+++G  L  ++  LGH  L++T+ Y          V  K+  D +  I  + 
Sbjct: 238 HSRALHLIADGSSLNQVKDFLGHKTLASTESYLPVKKNLRAAVREKSRQDALKNIRKKF 296


>gi|34558588|gb|AAQ75061.1| putative integrase [Lactobacillus phage JCL1032]
          Length = 370

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/305 (19%), Positives = 107/305 (35%), Gaps = 25/305 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L + E ERG+   TL             L ++ E+ I     + ++   +  ++     
Sbjct: 78  FLDH-ERERGVKPTTLSVRRT---GMSAMLNYFGEDAIA----KNITKPMVTKYLQSSLK 129

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +K  + ++     G+ +   +       TE+    +R   K    P ++ +K       N
Sbjct: 130 KK-SNSTVHVYRVGMSTMYDFAIDYGYLTENPAKGLRIQWKPQK-PTSITDKYFTDEELN 187

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            L        ++      +   +Y  G+R  EA  L  +NI D  + +      + I+  
Sbjct: 188 NLFAVIDRPDYLR-----LFKFMYLTGMRFGEATGLQFKNIHDQYADITGTMWANGIKSD 242

Query: 201 PLLPSV--------RKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLR 251
                         ++AI         D N      +F    +  P        Y++   
Sbjct: 243 SPKTLASFRSVFLPKQAIEIVEWFKQHDRNAEPDDFIFINQLKHVPFKMNTVALYLKNKS 302

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           +  G+    T H  RH+  + L   G  L  IQ  +GH +  TT +IY +V  K   D  
Sbjct: 303 KEAGIDRKITTHFFRHTHISKLAEQGVPLHVIQKRVGHIKAETTREIYLHVTKKMQEDME 362

Query: 311 MEIYD 315
            +I D
Sbjct: 363 KQIND 367


>gi|38637794|ref|NP_942768.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|38637805|ref|NP_942779.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527132|gb|AAP85882.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527143|gb|AAP85893.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 410

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 115/299 (38%), Gaps = 14/299 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E+ +  + +L +L  +RGL+K +L  Y    R FL   +   +  I       ++  +  
Sbjct: 109 EIARIYRRYLDHLRQDRGLAKNSLLVYGPFIRDFLDSHS-ANDGTILADAFCAVTIRD-- 165

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLPRALN 130
            F++   ++       +     ++SF  +L  R  T      ++ +++K    ++P  L 
Sbjct: 166 HFLTY--SEGRSAEYTRLMAVALRSFCHFLFLRGDTARDLYESVPSVRKWRQSTVPTFLT 223

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            +Q   L+      ++  +     R+ AIL LL   GLR  E +++   +I      L +
Sbjct: 224 PEQQEALI-----ASADRSTPTGRRDYAILLLLARLGLRAGEIVAMQLDDIHWRSGELVV 278

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG  +  VPL   V  AI  Y                    R     P    + + Q 
Sbjct: 279 HGKGQMVEHVPLPSEVGAAIATYLRDGRGASASRHVFLRRLAPRVGLAGPAAIGKIVCQA 338

Query: 251 RRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
               G       +AH  RH  AT ++ +G  +  I  +L H    +T IY  V  ++  
Sbjct: 339 FARAGFRPACRGSAHLFRHGLATTMIRHGASIAEIAEVLRHRSPDSTAIYAKVAFEDLR 397


>gi|329314332|gb|AEB88745.1| Transposase B [Staphylococcus aureus subsp. aureus T0131]
          Length = 630

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/286 (20%), Positives = 107/286 (37%), Gaps = 24/286 (8%)

Query: 38  SYECDTRQ-FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           SY  D  Q    F  F   +   +Q + QL+  EI A++S+     I   ++   +S ++
Sbjct: 236 SYVSDIAQRLKEFFNFLDMKFKQVQRVHQLTRVEIEAYLSELNMMGIKPSTITGRISILE 295

Query: 97  SFLKYLKKRKITTESNILNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
                L + +     + + + +    K   + PR ++E   L  +++ L           
Sbjct: 296 GLFSTLLRLEWDDVPSKILIYSEDYPKIPRAKPRFIDE-FVLEQLNSHLDKLPE------ 348

Query: 154 ARNSAILYLLYGCGLRISEALSLT----PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              + +  ++  CG+RISE  +L      ++   D      Q K  K  IVP+   V  A
Sbjct: 349 -YIATMTMIVQECGMRISELCTLKKGCLLEDKDGDFFLKYYQWKMKKEHIVPISKEV--A 405

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST------TAH 263
           +L                 LF    G PL    F+  + +L     +   +       AH
Sbjct: 406 LLIKVREDKVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKSGEIYRFHAH 465

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             RH+  T +++NG     +Q  LGH     T  Y ++  +   + 
Sbjct: 466 AFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFDETLKNE 511


>gi|254884116|ref|ZP_05256826.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|254836909|gb|EET17218.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
          Length = 376

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/272 (18%), Positives = 101/272 (37%), Gaps = 32/272 (11%)

Query: 48  IFLAFYTEEKITIQTIRQLSYTEIRAFISKR------RTQKIGDRSLKRSLSGIKSFLKY 101
             L  Y  E+ T   + Q+  T    +I         + + +   +           L  
Sbjct: 120 DILKEYAGERFT---LNQVDLTFCHGYIDYMLTSYRPKGKPLSASTRNTYYQIFNGALNA 176

Query: 102 LKKRKITTESNILNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
             + K   ++    M      K   S+   +  ++  +L+   + +   ++ ++ +    
Sbjct: 177 AVRAKRILKNPFNEMEKSEKPKMPESVRSYMTIEEVRSLIATPMQNEGVKSAYLFSC--- 233

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
                  CGLRIS+ + L  +N+  D    R+     K +    LP   +A+    +   
Sbjct: 234 ------FCGLRISDIIGLQWKNVFIDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPERGD 287

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
              + ++              P    + I+   +  G+    T HT RH+FAT +L+ G 
Sbjct: 288 KTADDHVFDL-----------PSGINQLIKPWAKAAGISKRFTFHTARHTFATMMLTLGA 336

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           DL ++  +LGH  +  TQ+Y  + +K   D +
Sbjct: 337 DLYTVSKLLGHTSVKMTQVYAKIVNKKKDDAV 368


>gi|313885888|ref|ZP_07819628.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924643|gb|EFR35412.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 414

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/287 (21%), Positives = 113/287 (39%), Gaps = 21/287 (7%)

Query: 33  KLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
             TLQ YE   + F  FL   Y    + I  +  L   +   ++  R   K    +  ++
Sbjct: 130 PATLQKYEVCRKHFQAFLKTKYRRSDLKIAELTVLVIHDFELYL--RTAAKQKQNTANKT 187

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L  +K+ + + K   +       N +           L+E++ + +    L         
Sbjct: 188 LKTLKTIVLFGKSIGVINHDPFRNHQFTSTPVDR-GFLSEEEVMDIATKDLSDIPRLELV 246

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKA 209
            D     I       GL   +  +L  ++I+  D +  +  + +  K+    LL  V K+
Sbjct: 247 RD-----IFVFSCFTGLAYIDVANLKSEHIVTLDGKEWIMTRRQKTKVESNVLLLEVPKS 301

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           I+  Y     +     +  LF  +  + +N      Y++++    G+  + T H  RH+F
Sbjct: 302 IIAKY-----EGQTAREDMLFPILSNQKMNS-----YLKEIADICGIKKNLTFHLARHTF 351

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           AT  LS G  + S+  +LGH  + TTQIY  + +K     M +  D+
Sbjct: 352 ATLCLSKGVPMESVSKMLGHTNIRTTQIYARITNKKIEHDMEQFADK 398


>gi|119945594|ref|YP_943274.1| phage integrase family protein [Psychromonas ingrahamii 37]
 gi|119864198|gb|ABM03675.1| phage integrase family protein [Psychromonas ingrahamii 37]
          Length = 331

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/292 (20%), Positives = 118/292 (40%), Gaps = 26/292 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++++ L     LS+ T++SY  +        A   ++ I      QL    +   +   
Sbjct: 37  ESYMRTLSD---LSQSTVRSYLRNI-------ARIFDKNIEDFPWHQLDQDVVIYILDNL 86

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLPRA---LNEKQ 133
               +   ++   LS IK        +K  +      +  +KK     + +    L+ + 
Sbjct: 87  TKTGLAPGTVGSYLSAIKGVCLSALNKKTMSPERHHLINIIKKPKGSRIKKEGTLLSAEN 146

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+ +         K    R+ AI+ +L GCGLR +E +++    I   +  L + GK
Sbjct: 147 IKDLIKSCD---QDLNKTKGVRDKAIIIILRGCGLRRTELINIRINRINFTEKKLTVVGK 203

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY------- 246
            +K R +     V++AI ++  L     +L I    F  +R       + QR        
Sbjct: 204 SNKEREIWFSDRVKEAISDWLGL-INKASLQISDDNFLFLRAHKSGKIINQRICSQTIFD 262

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           I Q ++ L +      H  R ++ T L+++G  +  IQ ++GH    TT++Y
Sbjct: 263 IFQAKQKLMMVKKFGPHDFRRTYITELINDGNAIEDIQGLVGHSSPETTRVY 314


>gi|15611684|ref|NP_223335.1| integrase-recombinase protein (XERCD family) [Helicobacter pylori
           J99]
 gi|4155169|gb|AAD06197.1| INTEGRASE-RECOMBINASE PROTEIN (XERCD FAMILY) [Helicobacter pylori
           J99]
          Length = 356

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 63/286 (22%), Positives = 125/286 (43%), Gaps = 21/286 (7%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y     +F  +      +K+++++++ +    +  F+S   T  +   + K     +
Sbjct: 73  INTYALPLLKFYEYA-----QKLSLKSLKNIDEVMLAEFLS-IYTGGLSLATKKNYRIAL 126

Query: 96  KSFLKYLKKRK-------ITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLLHTS 146
                Y+ K+              + N+  + +   N LP  LN ++    +++  +   
Sbjct: 127 LGLFSYIDKQNQDKNEKSYIYNITLKNISGVNQSAGNKLPTHLNNEELEKFLES--IDKI 184

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLP 204
             +  + ARN  ++ ++   G+R +EAL L  ++   +    T+ I+GKGDK R V L  
Sbjct: 185 EMSAKVRARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLKA 244

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AH 263
              +++L+ +        +   L LF   +G  L      + + ++  + GL      AH
Sbjct: 245 FHIESLLKEWLTERELYPVKNDL-LFCNQKGSALTQAYLYKQVERIINFAGLRREKNGAH 303

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            LRHSFAT L     DL  +Q  LGH  L+T++IYT+ +     + 
Sbjct: 304 MLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKDRLKEA 349


>gi|317488602|ref|ZP_07947146.1| phage integrase [Eggerthella sp. 1_3_56FAA]
 gi|325832826|ref|ZP_08165557.1| integrase/recombinase, phage integrase family protein [Eggerthella
           sp. HGA1]
 gi|316912296|gb|EFV33861.1| phage integrase [Eggerthella sp. 1_3_56FAA]
 gi|325485824|gb|EGC88286.1| integrase/recombinase, phage integrase family protein [Eggerthella
           sp. HGA1]
          Length = 266

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/300 (17%), Positives = 121/300 (40%), Gaps = 39/300 (13%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + ++  L+  + +S+ T+ SY     QFL       +E +       LS+ +   ++   
Sbjct: 2   EAFINYLKS-KEMSQNTISSYSYAVSQFLSRYTTVNDESL-------LSHKD---WLVSE 50

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNEKQALT 136
                  ++    +  +  +L ++    +        +R ++      L   +++ +  T
Sbjct: 51  ----FATKTANNRIGALNCYLDHIGYDGM-------RLRGVRVQQKPFLDNVISQDEYET 99

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L D +L          D     ++  L   G RISE   LT +++      L +  KG+K
Sbjct: 100 LRDGLLEDG-------DLYWHFVVRFLACTGARISELRRLTVESVRV--GHLDLISKGEK 150

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +R + +  S+++  L ++  C        +  +F G  G P++       +++  +  G+
Sbjct: 151 LRRIYIPKSLQQDALLWFKQCSL-----GEGFVFVGPNGNPMSTRGLSLGLKRCAKRYGV 205

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                  H+ RH FA + ++   D+  +  ++GH  + TT+IY    ++     + +  D
Sbjct: 206 NPDVVYPHSFRHRFAKNFIAKNPDIAFLADLMGHESIETTRIYLRRTAEEQRAAVDKAID 265


>gi|282877849|ref|ZP_06286661.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281300060|gb|EFA92417.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 431

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/290 (17%), Positives = 111/290 (38%), Gaps = 15/290 (5%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           R    F+     + I+I+TI +  + E R F+ KR    +   ++  +L  +   +    
Sbjct: 136 RNLREFVENKGVQDISIETITEDLFEEYRFFLKKR---GLKASTVNSNLCWLSRLMFRAV 192

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
            ++I   +   N +  K+   + R L +   + L+   +     E          +    
Sbjct: 193 SKRIIRCNPFENAKFEKEEKKI-RFLQKSDVMKLMAMKMNDKEAELA------RLMFVFS 245

Query: 164 YGCGLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
              GL IS+  +L  ++I    D Q  +R + +  K+  +  L  + + I+ +    P  
Sbjct: 246 CFTGLAISDMENLEYKHIQTAADGQMYIRKERQKTKVEFIVPLHPIAETIISHCQKEPER 305

Query: 221 LNLNIQLPLFRGIRGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
             +   +             +  V    +  + +  G+    + H  RH+F T  LS G 
Sbjct: 306 SEVQQTVKEKGDHLVFHRDCSRSVMDAKLSIVGKACGICQRLSYHMARHTFGTMSLSAGI 365

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
            + SI  ++GH  +S+TQ+Y  V  +   + M  +  +      +  ++ 
Sbjct: 366 PIESIAKMMGHASISSTQVYAQVTDRKISEDMDRLIAKQSAKEKETSERE 415


>gi|325268476|ref|ZP_08135106.1| integrase [Prevotella multiformis DSM 16608]
 gi|324989004|gb|EGC20957.1| integrase [Prevotella multiformis DSM 16608]
          Length = 414

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 100/276 (36%), Gaps = 20/276 (7%)

Query: 51  AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE 110
            F  ++ +T   I  ++      +    + + +   ++ R L  +   +     +++   
Sbjct: 140 EFVKDKGMTDIAITTITEDLFEEYRFYLKKRGLATATMNRYLCWLSRLMYRAVSQRLIRC 199

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
           +   N ++ K    + R L + +   L+   ++    E          +       GL I
Sbjct: 200 NPFENAKHEKAEQKI-RFLQKSEVSKLMALRVIDKEAEQA------RRMFIFACFTGLAI 252

Query: 171 SEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY------DLCPFDL 221
           ++   L   +I    D Q  +R + +  K+  +  L  + +AI+               +
Sbjct: 253 ADMEHLQFGHIQTAADGQKYIRKERQKTKVEFIVPLHPIAEAIINQCKKEQPSMKEMQTV 312

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
                  +FR       +  V    +  + +  G+    + H  RH+F T  LS G  + 
Sbjct: 313 KDKDNSFIFRTNC----SRSVMSVKLSIVGKACGIRERLSYHMARHTFGTMSLSAGIPIE 368

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           SI  ++GH  +S+TQIY  V      + +  +  + 
Sbjct: 369 SIAKMMGHASISSTQIYAQVTDNKISEDIDRLIRKH 404


>gi|158340194|ref|YP_001521364.1| phage integrase [Acaryochloris marina MBIC11017]
 gi|158310435|gb|ABW32050.1| phage integrase [Acaryochloris marina MBIC11017]
          Length = 298

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/288 (18%), Positives = 117/288 (40%), Gaps = 13/288 (4%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GL+  T++SYE      L     +        ++  L    +  +++      +  ++  
Sbjct: 17  GLAASTVRSYEFTLLPLLQQYGQW--------SLELLDRQTLEEYLNSL--SHLSFKTHH 66

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R  + +++ L +  ++     + +  M+  +K +      +  Q +  +    L   ++ 
Sbjct: 67  RHQAILQALLNFAVEQGYLRSNPMTRMKR-RKPDPAKGEHDSDQIIRYLTPDQLQLQYQL 125

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              DAR +A++ LL+  G RISE LSL  + +  +Q   ++ GKG++ R         + 
Sbjct: 126 VSKDARTAALVRLLHRTGARISELLSLDLEALDLEQRKFQVIGKGNRQRWCFYSEDAAEV 185

Query: 210 ILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           + +Y        +  +     +   +   L+        +QL +       T  H LRH+
Sbjct: 186 LQKYLAEYRHPGSPALFTAQQYLSDQVNRLSYRSAHHNWKQLIKGHPTLAGTRLHDLRHT 245

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           FAT  +     L  +++++GH  + TT  Y  V S+   +     +D+
Sbjct: 246 FATERVGIIA-LEELRALMGHQSIQTTLRYQKVTSEQAQNAAQRAFDK 292


>gi|126437848|ref|YP_001073539.1| phage integrase family protein [Mycobacterium sp. JLS]
 gi|126237648|gb|ABO01049.1| phage integrase family protein [Mycobacterium sp. JLS]
          Length = 388

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/353 (17%), Positives = 123/353 (34%), Gaps = 75/353 (21%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L+ L      S LT++SY  D  ++  FL         + +  +    ++RAF+   R
Sbjct: 30  SYLRELAASD-CSPLTVRSYAFDLLRWFRFLHDR------LISWERAERVDVRAFVEYLR 82

Query: 80  -----------------------------TQKIGDRSLKRSLSGIKSFLKYLKKRKI--- 107
                                        + K   R++   LS +  F ++     +   
Sbjct: 83  AAPNPQRLRRRPDGPPPGSVNAVTGKAELSGKYAPRTINHQLSVLFGFYEHACAADLGPL 142

Query: 108 ----------------TTESNILNMR-------NLKKSNSLPRALNEKQALTLVDNVLLH 144
                              + + +           K    + RA+ +  A  L + +  H
Sbjct: 143 VNPVPAQRARHGGRPHAHHNPMEDFAIFRRANYRQKTPRPVWRAIPDDAAGALFNALRSH 202

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
                     R+ A++      G+R SE L L   ++   + T+ +  KG ++R      
Sbjct: 203 ----------RDRALVSFYLSSGVRASELLGLRHGDLDAGRYTITVTSKGSRMRETVPAS 252

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
                 L  Y      +     +   R  +  PLN    +  +R  R    L  + + H 
Sbjct: 253 VDSFVWLALYLAQRPPIEPGGPVWWTRRSQPAPLNYHAMRAVLR--RANASLGANWSLHD 310

Query: 265 LRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            RH+ A  +L++    L  +Q++L H  ++TTQIYT    ++    ++E + +
Sbjct: 311 FRHTAAARMLADPAFTLVDVQTVLRHASVTTTQIYTQPRLEDLIGKVLEHHAR 363


>gi|298531269|ref|ZP_07018669.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508879|gb|EFI32785.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 394

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/313 (19%), Positives = 125/313 (39%), Gaps = 18/313 (5%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           EG    ++    L +  + +LQ     R + K  +   +        +L           
Sbjct: 91  EGRGRSKLQRARLPRVYEEYLQFYTQTRQVGKQQIYRVQGTLSALNDYLQNQDM------ 144

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLK 120
            ++ L    + AF+++ R +K    +     SG++ FL+Y   +R+I  +     ++   
Sbjct: 145 GLKDLDVLHMDAFLAE-RNRKYAPETRIHERSGLRGFLRYLYLERQILKKDLSALIQGPP 203

Query: 121 K--SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
               +  PR L  +Q  TL  ++      + +    R+ A+++L Y  GLR  E   +T 
Sbjct: 204 VYAQSRPPRFLTLEQIKTLFQSI-----DKDRPGGLRSYAMIHLAYSLGLRPGEICRVTL 258

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-P 237
            +I+     + +  + +       LP      L  Y      ++   +  L        P
Sbjct: 259 DDILFRDKLIYLPDRKNSSPAKLPLPQGALRALAAYLAWNRPMDPGHRFLLCNTRTPYGP 318

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L P    + I    R  G+    +A+ LRH++A +LL     +  I+ +LGH  + T++ 
Sbjct: 319 LTPLTVSQNISACFRRAGI--KGSAYWLRHTYAQNLLQAEASIFEIKEMLGHDIIKTSKR 376

Query: 298 YTNVNSKNGGDWM 310
           Y +V+++   + +
Sbjct: 377 YLHVHTRLMREVL 389


>gi|281425544|ref|ZP_06256457.1| integrase [Prevotella oris F0302]
 gi|281400350|gb|EFB31181.1| integrase [Prevotella oris F0302]
          Length = 406

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/320 (20%), Positives = 134/320 (41%), Gaps = 33/320 (10%)

Query: 14  LLKERQNWL----QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT--IRQLS 67
           LL+    +L    + + I+R L    L++Y+      L  L  Y ++K  +    + QL 
Sbjct: 110 LLESFGEYLTQTKERVGIDRALKTFKLRTYQ------LSLLREYVQKKHRVSDVPLSQLD 163

Query: 68  YTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
              I  F       +K+   S+  ++S +++ ++   K+ +      L   + ++    P
Sbjct: 164 KAFIEGFEYYLTIDRKLKRSSISSTVSTLQTIVRMAVKKGVLDFYPFLGY-SYERPKGEP 222

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARN-SAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           R++ +++   ++D        E KW + R    +       GL IS+  +L  +NI+ ++
Sbjct: 223 RSITQEELEHIIDL-------EIKWENYRIVRDLFVFSCFSGLAISDVRNLREENIVLEE 275

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             L I+G+  K +    +  +  A+                +P             +   
Sbjct: 276 GELCIKGRRMKTKTPYRVQVLPPALEIMNRYRGIRAGFVFDVP----------TTDIILN 325

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            +  ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQIY  V+S+
Sbjct: 326 GMHHIQRNIGMKTPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAVVSSE 385

Query: 305 NGGDWMMEIYDQTHPSITQK 324
                M ++  +   + T K
Sbjct: 386 RIHRDMQKVQQRIQDTFTLK 405


>gi|322418059|ref|YP_004197282.1| integrase family protein [Geobacter sp. M18]
 gi|320124446|gb|ADW12006.1| integrase family protein [Geobacter sp. M18]
          Length = 356

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 101/271 (37%), Gaps = 20/271 (7%)

Query: 53  YTEEKITIQTIRQLSYTEI---RAFISKRRTQK---IGDRSLKRSLSGIKSFLKYLKKR- 105
           + +++I + T+  ++   I   R  +   +T+        +  R ++ +           
Sbjct: 93  WWKDEIGLYTLADVTPAMIGECRDKLLAGKTKGGGLRSPATTVRYMAALSHAFSVAVNEW 152

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
               +S +  ++  K+     R L + +   L++          +  +     ++ L   
Sbjct: 153 GWVEDSPMRKVKKPKEPRGRVRFLTDDERNRLLEA-------AKRSCNNCLYPVVLLALS 205

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
            G+R SE ++L  ++I   +  L +    +  R    + ++  ++L              
Sbjct: 206 TGMRFSEIMNLKWKDIDLKRKCLILHDTKNGERRNVPVVNLAHSVLTERSKVRRL----G 261

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
              +F  I    + P   ++      R   L      H LRHS A++L  NG  L  I  
Sbjct: 262 TELVFPSISDPTM-PSNLRKSWAAAVRDANLE-DFRFHDLRHSAASYLAMNGATLAEIAE 319

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +LGH  L+  + Y +++ ++    +  + ++
Sbjct: 320 VLGHKTLAMVKRYAHLSEQHTSRVVASMNEK 350


>gi|237711592|ref|ZP_04542073.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|229454287|gb|EEO60008.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA]
          Length = 381

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 96/256 (37%), Gaps = 27/256 (10%)

Query: 65  QLSYTEIRAFISKRRT-------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM- 116
           ++       FI   +          +  +S    +    + L    + ++  E+ I+ + 
Sbjct: 135 EIDKEWCLGFIDWLQHTYKTRWGNPLSPKSAADYVGYFSTALNAAVRAEVIPENPIMTLA 194

Query: 117 --RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
               +K   S    L   +   L+D        +         A L+  Y CGLR+S+  
Sbjct: 195 PTERIKVPESKREYLTIDEIKALIDTECPREDVK--------RAYLFSCY-CGLRLSDIY 245

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +L  ++I  D    R+     K      LP  R A+       P       +L +F G+ 
Sbjct: 246 ALRWKDIFLDGEQYRVSTVMQKTTTPIYLPLSRHAVRWL----PERDGEGDELKIFAGLP 301

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            +P       + + +     G+    T HT RHSFAT +L+ G DL +   +LGH  + T
Sbjct: 302 AEP----NINKVLAKWAVAAGITKKITYHTSRHSFATMMLTLGADLYTTSKLLGHSNVKT 357

Query: 295 TQIYTNVNSKNGGDWM 310
           TQIY  +      + +
Sbjct: 358 TQIYAKIVDSKKVEAV 373


>gi|190015183|ref|YP_001966733.1| putative integrase/recombinase [Bacillus cereus]
 gi|190015448|ref|YP_001967057.1| putative integrase/recombinase [Bacillus cereus]
 gi|218848491|ref|YP_002455116.1| phage integrase family protein [Bacillus cereus AH820]
 gi|116584859|gb|ABK00974.1| putative integrase/recombinase [Bacillus cereus]
 gi|116585129|gb|ABK01238.1| putative integrase/recombinase [Bacillus cereus]
 gi|218540542|gb|ACK92938.1| phage integrase family protein [Bacillus cereus AH820]
          Length = 347

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/293 (20%), Positives = 116/293 (39%), Gaps = 29/293 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +  S+ T Q Y  D   FL ++         I TI++LS+ ++  +  +  ++K    +L
Sbjct: 59  KKRSERTKQQYLHDLSHFLRYIKE------AIGTIQELSHNDMEIYFYEL-SKKYAATTL 111

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++  + ++ FLKY+      +++    ++ +  KK   + R L  ++   ++D       
Sbjct: 112 RKKKTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLYPEEVTQILD------- 164

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----DQSTLRIQGKGDKIRIVPL 202
            E K  +       +LL   GLRI E  +    +++     +   LR+ GKG+K R V +
Sbjct: 165 -ELKKSNYFVYTAFFLLTTTGLRIEEIATAKWADLVFHSSLNAYLLRVVGKGNKSREVRI 223

Query: 203 LPSVRKAILEYYDLCPF--DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-- 258
                 A+     L      L+ +          G           + +      L    
Sbjct: 224 FEDTLDALCHVRSLRKQTTKLDASNTSAFLPKADGSNYRADYLSSLVAKKIEETNLTFLR 283

Query: 259 ----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                 T HT RH  A +L+  G +L+ I+  LGH  + TT+ Y    ++   
Sbjct: 284 YRQDRITPHTCRHFMANYLMEKGIELKKIRDYLGHESIMTTERYLRERTRRQN 336


>gi|229106636|ref|ZP_04236877.1| Integrase-recombinase [Bacillus cereus Rock3-28]
 gi|228676818|gb|EEL31423.1| Integrase-recombinase [Bacillus cereus Rock3-28]
          Length = 390

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 122/313 (38%), Gaps = 34/313 (10%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE--------KITIQTIRQLSYTEIRAF 74
           ++++ ++   + T +SY  +   F   +  + EE        +     ++ L    IR +
Sbjct: 75  KDMDEKKNRKEDTKKSYVSEILSFCQCMVQHAEEFELNGEEVQQNDSLLKTLQLWHIRKY 134

Query: 75  ISKRRT-------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--NLKKSNSL 125
            +  +              +L +    I+SFLK+L       +     ++  N+ + +  
Sbjct: 135 NAWLKRVENGRNGATYAVATLAKKTVLIRSFLKHLHVFSYIEKPLHEELQRANVNEQDRP 194

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDD 184
            R L+  + + ++                 N  IL  L   G RI E  +   ++   D 
Sbjct: 195 NRDLSYDEVMKILGFYKEQG-------HLVNYTILLALASTGARIQELCTARVKDLHYDG 247

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGV 242
           +  L++ GKGDK+R + +   + + I E      F   L+   + PLF   RG   NP  
Sbjct: 248 KYWLKVTGKGDKVRELFISEHLFQCISEMRRRRGFQTILDRGDECPLFVNQRGNFYNPKT 307

Query: 243 FQRYIRQLRRYLGLPL------STTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTT 295
               ++ + +   L          TAHT RH+FA   +  G  DL  +   LGH  + TT
Sbjct: 308 LSNQVKDMIKKTNLDFLKYRENPVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTT 367

Query: 296 QIYTNVNSKNGGD 308
           +IY   + K   +
Sbjct: 368 KIYLEKHMKRKNN 380


>gi|302036632|ref|YP_003796954.1| putative integrase [Candidatus Nitrospira defluvii]
 gi|300604696|emb|CBK41028.1| putative Integrase [Candidatus Nitrospira defluvii]
          Length = 356

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/304 (19%), Positives = 113/304 (37%), Gaps = 31/304 (10%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P+  +    +    +L+     R         Y           A +   K     +  +
Sbjct: 53  PKEEARTFRELMDRYLREHASRR-------SGYRRYVNMVTNLTAHFGNPK-----LEHV 100

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKSNSL 125
           +   I A+ +KR    +   ++ R L+ +K       +  + T ++ +  +   +++N+ 
Sbjct: 101 TPKTIVAYKNKRYADGVTPATINRELALMKKAFNLACREWEWTKDNPVCRVSMERENNTR 160

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
            R L  ++   L+                    ++      GLR  E L+LT   +  ++
Sbjct: 161 DRWLTCEEERRLL-----------AASAPWLQEVIVFAIHTGLRCGEILNLTWAGVDLNR 209

Query: 186 STLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
            T  + + K  + R +PL  ++ +A+         D  L     +F      PL+    +
Sbjct: 210 RTATVFKSKNGERRTIPLSHTLVQALQNKARGRRMDSEL-----VFTSAAHTPLDAPNLR 264

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R  R   ++ G  L    H LRH+ AT ++  G DL  +Q ILGH     TQ Y +   +
Sbjct: 265 RSFRLALKH-GQVLDFRFHDLRHTSATRMVQAGVDLYKVQRILGHKSPMMTQRYAHHYPE 323

Query: 305 NGGD 308
           +  D
Sbjct: 324 SLRD 327


>gi|299758063|dbj|BAJ10038.1| transposase B [Staphylococcus aureus]
          Length = 630

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/286 (20%), Positives = 107/286 (37%), Gaps = 24/286 (8%)

Query: 38  SYECDTRQ-FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           SY  D  Q    F  F   +   +Q + QL+  EI A++S+     I   ++   +S ++
Sbjct: 236 SYVSDIAQRLKEFFNFLDMKFKQVQRVHQLTRVEIEAYLSELNMMGIKPSTITGRISILE 295

Query: 97  SFLKYLKKRKITTESNILNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
                L + +     + + + +    K   + PR ++E   L  +++ L           
Sbjct: 296 GLFSTLLRLEWDDVPSKILIYSEDYPKIPRAKPRFIDE-FVLEQLNSHLDKLPE------ 348

Query: 154 ARNSAILYLLYGCGLRISEALSLT----PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              + +  ++  CG+RISE  +L      ++   D      Q K  K  IVP+   V  A
Sbjct: 349 -YIATMTMIVQECGMRISELCTLKKGCLLEDKDGDFFLKYYQWKMKKEHIVPISKEV--A 405

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST------TAH 263
           +L                 LF    G PL    F+  + +L     +   +       AH
Sbjct: 406 LLIKVREDKVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKSGEIYRFHAH 465

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             RH+  T +++NG     +Q  LGH     T  Y ++  +   + 
Sbjct: 466 AFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFDETLKNE 511


>gi|109392319|ref|YP_655549.1| gp32 [Mycobacterium phage Halo]
 gi|189043119|ref|YP_001936060.1| integrase [Mycobacterium phage BPs]
 gi|239590043|ref|YP_002941890.1| gp32 [Mycobacterium phage Angel]
 gi|91980569|gb|ABE67289.1| integrase [Mycobacterium phage Halo]
 gi|171909234|gb|ACB58191.1| integrase [Mycobacterium phage BPs]
 gi|238890575|gb|ACR77564.1| gp32 [Mycobacterium phage Angel]
 gi|255927876|gb|ACU41496.1| gp32 [Mycobacterium phage Hope]
          Length = 398

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/309 (18%), Positives = 106/309 (34%), Gaps = 32/309 (10%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P     + ++   ++L +L    G    T  +     R+    L           +   +
Sbjct: 56  PVPAPRDWMQILDDYLDSLAAA-GYPSTTRATRAAHIRRLARGLGV---------SPENV 105

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           +   +  F +++  +     + +   +   SF  +  +          ++ ++K +   P
Sbjct: 106 TGASLVRFFAEQ--EHWARETRRGYRNTCVSFFGWACREGRIPTDPSADLPSIKPAPPAP 163

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDD 184
           R   ++     +                    +L L    GLR +E   ++  +     D
Sbjct: 164 RPAPDRVYRAALMAADARVM-----------LMLRLAAELGLRRAEVAQVSTSDLTESFD 212

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
              L + GKG K R +P+   + + I                  LF G     L+P    
Sbjct: 213 GYVLVVHGKGGKNRTLPVSDELAELIAR--GAAGHTDGAPATGYLFPGDDAGHLSPRWVG 270

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R          LP   T H LRH FAT       +LR++Q++LGH  ++TT+IYT V   
Sbjct: 271 RLCGDA-----LPDGWTMHKLRHRFATRAYRGSRNLRAVQTMLGHASVATTEIYTAVEDA 325

Query: 305 NGGDWMMEI 313
                MM  
Sbjct: 326 EVRAAMMAA 334


>gi|228941666|ref|ZP_04104213.1| Integrase/recombinase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228974593|ref|ZP_04135159.1| Integrase/recombinase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228981188|ref|ZP_04141488.1| Integrase/recombinase [Bacillus thuringiensis Bt407]
 gi|228778388|gb|EEM26655.1| Integrase/recombinase [Bacillus thuringiensis Bt407]
 gi|228784996|gb|EEM33009.1| Integrase/recombinase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228817878|gb|EEM63956.1| Integrase/recombinase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326942274|gb|AEA18170.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 332

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/291 (17%), Positives = 107/291 (36%), Gaps = 27/291 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GL + T+  Y      F      +         I +L+   I  ++S      + +++  
Sbjct: 57  GLRERTINDYYIHVSHFAKITDTHY--------IEELNVNHIYEWLSSM---NVSNQTKL 105

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             L  +K+FL           +   N++ +K    +     +++      N+LL     T
Sbjct: 106 TRLKCLKAFLGRCHDNGWIDINFWRNVK-IKVDTPVKEGATDREI-----NILLSVLDLT 159

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG--KGDKIRIVPLLPSVR 207
           +++D R++  + L+Y  G+R+     L  +++  +   L + G    +   I        
Sbjct: 160 RFLDLRDATAILLMYQTGIRVGTLAQLEHKHVDLEAKVLSVDGGIIKNHESIYLPFDDAL 219

Query: 208 KAILEYYDLCPFDLNLNIQL---PLFRGIRGKPL----NPGVFQRYIRQLRRYLGLPLST 260
             +L+        +    Q     LF    G  +       +  + + +  +  GL  + 
Sbjct: 220 ARLLDVLMKQNEIIRREYQAKNGYLFITKSGGSVLTSPTNNIISKRMTKHAKEYGL-KNI 278

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             H +R  FA +LL  G ++  I   LGH  +S T  Y +++     + + 
Sbjct: 279 NPHAIRRGFAKNLLKKGANVALISKALGHSDISVTTRYLHLDKNEVAESLR 329


>gi|323127261|gb|ADX24558.1| site-specific tyrosine recombinase XerS [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 356

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/326 (19%), Positives = 121/326 (37%), Gaps = 45/326 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTE------EKITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  + ++F  +L             I + T+  L+  ++ AF+   R     
Sbjct: 33  YSFTTLYEYLKEYKRFFDWLMDADLTDATVIADIDLATLEHLTKKDLEAFVLYLRERPSL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-------- 126
                 + +   ++ R+LS + S  KYL +     +      RN+ K  S          
Sbjct: 93  NTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAS 152

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDA---------------RNSAILYLLYGCGLRIS 171
           RA N KQ L L D  +    +  K  +                R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETMGFLEYVDKDYELKLSNRAKSSFRKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLF 230
           EA++L  +++  +   + +  KG K   V +    +  +  Y  +         Q L  F
Sbjct: 213 EAVNLDLKDVNLNMMVIELIRKGGKRDSVNVAGFAKPYLEAYLAIRKNRYKAEKQDLAFF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +  +   +    T H LRH+ AT L         +   L
Sbjct: 273 LTEYRGVPNRMDASSIEKMVGKYSQDFKI--RVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH     T +YT++ +    + + ++
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNALDKL 356


>gi|237719978|ref|ZP_04550459.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229450530|gb|EEO56321.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 376

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/272 (18%), Positives = 101/272 (37%), Gaps = 32/272 (11%)

Query: 48  IFLAFYTEEKITIQTIRQLSYTEIRAFISKR------RTQKIGDRSLKRSLSGIKSFLKY 101
             L  Y  E+ T   + Q+  T    +I         + + +   +           L  
Sbjct: 120 DILKEYAGERFT---LNQIDLTFCHGYIDYMLTSYRPKGKPLSASTRNTYYQIFNGALNA 176

Query: 102 LKKRKITTESNILNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
             + K   ++    M      K   S+   +  ++  +L+   + +   ++ ++ +    
Sbjct: 177 AVRAKRILKNPFNEMEKSEKPKMPESVRSYMTIEEVRSLIATPMQNEGVKSAYLFSC--- 233

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
                  CGLRIS+ + L  +N+  D    R+     K +    LP   +A+    +   
Sbjct: 234 ------FCGLRISDIIGLQWKNVFIDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPERGD 287

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
              + ++              P    + I+   +  G+    T HT RH+FAT +L+ G 
Sbjct: 288 KTADDHVFDL-----------PSGINQLIKPWAKAAGISKRFTFHTARHTFATMMLTLGA 336

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           DL ++  +LGH  +  TQ+Y  + +K   D +
Sbjct: 337 DLYTVSKLLGHTSVKMTQVYAKIVNKKKDDAV 368


>gi|57867419|ref|YP_189034.1| Tn554-related, transposase A [Staphylococcus epidermidis RP62A]
 gi|282919766|ref|ZP_06327498.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp.
           aureus C427]
 gi|283771081|ref|ZP_06343972.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp.
           aureus H19]
 gi|293367758|ref|ZP_06614407.1| transposase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|57638077|gb|AAW54865.1| Tn554-related, transposase A [Staphylococcus epidermidis RP62A]
 gi|282316404|gb|EFB46781.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp.
           aureus C427]
 gi|283459675|gb|EFC06766.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp.
           aureus H19]
 gi|283471202|emb|CAQ50413.1| transposition regulatory protein TnpA [Staphylococcus aureus subsp.
           aureus ST398]
 gi|291318097|gb|EFE58494.1| transposase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|323464882|gb|ADX77035.1| Tn554-related, transposase A [Staphylococcus pseudintermedius ED99]
 gi|329734754|gb|EGG71060.1| phage integrase, N-terminal SAM domain protein [Staphylococcus
           epidermidis VCU045]
 gi|329734787|gb|EGG71092.1| phage integrase, N-terminal SAM domain protein [Staphylococcus
           epidermidis VCU028]
          Length = 370

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 131/352 (37%), Gaps = 71/352 (20%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI---- 75
            +L+ L+  +  S  T ++Y    + F ++L     +KI  + +   ++ +   ++    
Sbjct: 29  RYLKYLDSVK-KSLNTKKTYAYALKNFFVYLES---KKICYKEVSFDNFVDFIRWMKTPF 84

Query: 76  -------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES----------------- 111
                    R+ + I  +++  +++ + +F  YL + K    +                 
Sbjct: 85  EYENVLSYHRKEKSISPKTINLTMTVVSNFYDYLYRSKKLDVNFYDFMHMESKYSKKYKS 144

Query: 112 ----------NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
                      + N+  +K+       L   +   L++          +  + R+  ++ 
Sbjct: 145 FMHHINKDYRTLKNILKVKEPKKKIEVLTNAEVKKLLE----------EANNIRDKFLIQ 194

Query: 162 LLYGCGLRISEALSLTPQNIMDD-QSTLRIQGKGDK----------IRIVPLLPSVRKAI 210
           LLY  GLRI E LSL   +I  D +   +I  K              R + +  S+    
Sbjct: 195 LLYETGLRIGEVLSLRIDDIKFDFRKGHQIVLKNRFNDNGTYLKTGERKIFISQSLIDLY 254

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            +Y      +L++     LF  I+G+     +N        ++L+    +  +   H  R
Sbjct: 255 DDYVYEIIDELSI-CSDYLFVKIKGRNVGEAMNYSDIYSLFKRLKHKTSI--NVHPHLFR 311

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQT 317
           H+ AT   +   D++ +Q  LGH  + TT  +Y +   ++  +   ++  Q 
Sbjct: 312 HTHATVFYNETKDIKQVQERLGHSNIQTTINLYVHPTEEDIREDWNKVKHQF 363


>gi|256851111|ref|ZP_05556500.1| site-specific tyrosine recombinase XerS [Lactobacillus jensenii
           27-2-CHN]
 gi|260660535|ref|ZP_05861450.1| site-specific tyrosine recombinase XerS [Lactobacillus jensenii
           115-3-CHN]
 gi|282932250|ref|ZP_06337694.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1]
 gi|297205976|ref|ZP_06923371.1| site-specific tyrosine recombinase XerS [Lactobacillus jensenii
           JV-V16]
 gi|256616173|gb|EEU21361.1| site-specific tyrosine recombinase XerS [Lactobacillus jensenii
           27-2-CHN]
 gi|260548257|gb|EEX24232.1| site-specific tyrosine recombinase XerS [Lactobacillus jensenii
           115-3-CHN]
 gi|281303645|gb|EFA95803.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1]
 gi|297149102|gb|EFH29400.1| site-specific tyrosine recombinase XerS [Lactobacillus jensenii
           JV-V16]
          Length = 351

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/352 (18%), Positives = 136/352 (38%), Gaps = 38/352 (10%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE---- 56
           ME      ++  EL      +++   +    S  T   Y  + R+F  +L   +      
Sbjct: 1   METKKYLTLIDQEL-NNLPVFIREYNLSTNHSLTTSYQYLTEIRRFFDWLRHQSLSPANS 59

Query: 57  --KITIQTIRQLSYTEIRAFISKRRTQKI------GDRSLKRSLSGIKSFLKY---LKKR 105
             +I+I  ++QL+ +++  +I   R  K          ++ RS++ ++S   +      +
Sbjct: 60  NVEISINDLKQLTRSDMMIYIDALRHSKNQQGRLNSPTTVNRSINALRSLFTFLTITADK 119

Query: 106 KITTESNILNMRNLKKSNSL---PRALN--------EKQALTLVDNVLLHTSHET----- 149
                + +L +++L    +L      L         + + L  + N      ++      
Sbjct: 120 PYFDHNIMLKIQSLNNLETLNYRAHVLESHMYTGNLKYEFLDFLSNKYASLCNKQALASF 179

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           K    R+ AI+ L+ G G+R+SE  S+   ++   ++TL +  KG +   +P+       
Sbjct: 180 KLNKERDIAIIALILGTGVRVSECSSINISDLNLKEATLDLTRKGGQKDSIPVASWTLPY 239

Query: 210 ILEYYDLCPFDLNLNIQLPLFR----GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           I  Y ++     +       F       +   + P   +R + +  +  G P   T H L
Sbjct: 240 ISAYAEVRTKRYHAEKNDKAFFLTYYHKKTSRITPNGIERLVSKYSKAFGHP--LTPHKL 297

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           RH+ A+ L     D   +   LG    + T +YT+V+ K     + ++ D  
Sbjct: 298 RHTLASELYGVTKDQVLVAQQLGQKGTTATDLYTHVDQKEQRKALDQLADNH 349


>gi|319651081|ref|ZP_08005215.1| hypothetical protein HMPREF1013_01826 [Bacillus sp. 2_A_57_CT2]
 gi|317397251|gb|EFV77955.1| hypothetical protein HMPREF1013_01826 [Bacillus sp. 2_A_57_CT2]
          Length = 370

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/351 (16%), Positives = 121/351 (34%), Gaps = 57/351 (16%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++ E  N+   L+ ++G+S  T++ Y  D + F ++L     E +    ++         
Sbjct: 19  IIPEILNFTDMLK-QKGMSPNTVRGYLNDLKAFYMWL---DHEGLLFYEVKAKHIPSFIE 74

Query: 74  FISKRRTQK-IGDRSLKRSLSGIKSFLK-YLKKRKITTESNILNMR-------------- 117
           FI  R     +   +L R L+ + SF + +        ES ++ +               
Sbjct: 75  FIDGRSGCGRVSPPTLSRYLATLSSFYRHFGAIGGYVEESPVVKVEGYRPFQRRGYFRHI 134

Query: 118 ------------NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
                         K      R      A+T     +    +E + +  RN  +  LLY 
Sbjct: 135 TNNWDKNLHNYFKRKHKKKSDRKRLFPDAVTKCYETIESLWNENESLKFRNRLMFKLLYE 194

Query: 166 CGLRISEALSLTPQNIM-----DDQSTLRI---------QGKGDKIRIVPLLPSVRKAIL 211
            G R+SE L L   +       +    + +         +      R  P+   + + + 
Sbjct: 195 TGYRVSELLHLKIDDFDYPDPTEKTGKIYLIERDTEPPDRQLKTGERTTPVSSKLLQELD 254

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-----LSTTAHTLR 266
           +Y               +F       L   + +  +  + + + L      +  T H LR
Sbjct: 255 DYI--LYHRPEKEGIDYIFVSHSKANLGEAIGRATVEGILKEIELASELRFIRLTPHALR 312

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           H+ A+ L   G D+  I+  LGH  + +T  Y   + +     +++ +++ 
Sbjct: 313 HTHASELQDLGVDVNIIKDRLGHGSIESTAKYAKPSIET----LIKAHERY 359


>gi|288923736|ref|ZP_06417832.1| integrase family protein [Frankia sp. EUN1f]
 gi|288344916|gb|EFC79349.1| integrase family protein [Frankia sp. EUN1f]
          Length = 354

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/331 (17%), Positives = 120/331 (36%), Gaps = 49/331 (14%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WLQ +  + G +  T+ +Y     ++L+       + +T       +   +  F+ +  +
Sbjct: 23  WLQ-IWTDLGRAPRTIDAYARGLAEYLLMCEREDVDPVTA------NRAHVAVFVRELTS 75

Query: 81  Q---------------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-------- 117
           +                + + ++++ L  ++ F  +L +  +   + +   R        
Sbjct: 76  RPSLRGANVVSIDSGAGLANATIQQRLVPVRLFYDFLMEEGLRESNPVGRGRYTPGGRAG 135

Query: 118 -----NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
                 + +   LP   +E++   L+         E     ARN  +L L Y   LR  E
Sbjct: 136 GAQRGLVPRLTRLPWIPSEQEWQGLL--------KEAGREPARNRLMLALAYDAALRREE 187

Query: 173 ALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
             SL   +I     TLR++    K    R+VP   S    + +Y             L L
Sbjct: 188 LCSLRTDDIDPAHRTLRVRAETTKNRLERVVPYSASTGVLLSQYLAHRVSVSRARGPLFL 247

Query: 230 FRGIRGK--PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
               R    PL+   + + +R++    G+    + HT RH   T L   G ++ +I +  
Sbjct: 248 SESRRNHAQPLSLWTWSKVVRRIALASGVER-FSTHTTRHLCLTDLARMGWEVHAIAAFA 306

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           GH    +T  Y +++ +     + +     H
Sbjct: 307 GHRHTDSTLRYIHLSGRELAGKLSQGMRHIH 337


>gi|261879699|ref|ZP_06006126.1| integrase [Prevotella bergensis DSM 17361]
 gi|270333720|gb|EFA44506.1| integrase [Prevotella bergensis DSM 17361]
          Length = 406

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/319 (20%), Positives = 129/319 (40%), Gaps = 31/319 (9%)

Query: 14  LLKERQNWL----QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLS 67
           LL+    +L    + + I+R L    L++Y+      L  L  Y ++K  +  I   QL 
Sbjct: 110 LLESFGEYLTQTKERIGIDRALKTFKLRTYQ------LSLLREYVQKKHKVCDIPLSQLD 163

Query: 68  YTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
              I  F       +++   S+  +LS +++ ++   K+ +      L   + ++    P
Sbjct: 164 KAFIEGFEYYLTIDRRLKRSSISSALSTLQTIVRMTVKKGVLDFYPFLGY-SYERPKGEP 222

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R++ + +   ++D   L    E   I      +       GL IS+  +L  +NI+ ++ 
Sbjct: 223 RSITQDELQKIID---LEIEWENYRIV---RDLFVFSCFTGLAISDVRNLREENIVTEEG 276

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            L I+G+  K +    +  +  A                 +P             +    
Sbjct: 277 ELCIKGRRMKTKTPYRVQVLPPAWAIMERYRGKRAGFVFDVP----------TTDIILNG 326

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +  ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQ+Y  V+S+ 
Sbjct: 327 MHYIQRNIGMETPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSER 386

Query: 306 GGDWMMEIYDQTHPSITQK 324
               M  I  +   + T K
Sbjct: 387 IHRDMQAIQQRIQDTFTLK 405


>gi|296127267|ref|YP_003634519.1| integrase family protein [Brachyspira murdochii DSM 12563]
 gi|296019083|gb|ADG72320.1| integrase family protein [Brachyspira murdochii DSM 12563]
          Length = 382

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/329 (19%), Positives = 130/329 (39%), Gaps = 32/329 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIF-------LAFYTEEKI-----TIQTIRQLS 67
            +   L I++  S  T+++Y+ +   F  F        + + E+       T    + ++
Sbjct: 21  QFSDYLSIDK--SPSTVKTYKNNIIYFFKFIIKQDNDYSIFAEKDYLYICSTEVLYKNIN 78

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE----SNILNMRNLKKSN 123
              +  +IS +   ++    +   ++ +KS+LK+L K+KI           +++  K   
Sbjct: 79  KELLEKYISYQTEHQLSSDIINCRINVVKSYLKFLHKKKIIEAKILIDTFDDIKRPKPII 138

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
                +   Q L ++    +  + +  + + RN  ++ L+   G+R  E   +  +NI  
Sbjct: 139 KEQLVIKANQTLDIIKK--IERTSKESFTNQRNILMMLLMSNTGIRRKETAGIDIRNINL 196

Query: 184 DQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI---QLPLFRGIRGKPLN 239
           +  T+ I   KG K RIV     ++  +++Y       L  N    Q  LF    G+ L 
Sbjct: 197 ENKTITIYKTKGSKPRIVVFSDMIKDVLIDYIAERDEILRKNKIKEQNNLFIKNNGQDLA 256

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL-STTQIY 298
                  +R + +     +  T H+ R  FAT +  +G +   I  ++GH  + +TT  Y
Sbjct: 257 IETMTMIMRVISKRN--KVKITCHSFRRGFATDMAESGTETYLISKMMGHSNINTTTSRY 314

Query: 299 TNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
             V      + M       HP      +K
Sbjct: 315 IYVLMNMIKNAMSN-----HPFNKANTEK 338


>gi|229829883|ref|ZP_04455952.1| hypothetical protein GCWU000342_01989 [Shuttleworthia satelles DSM
           14600]
 gi|229791181|gb|EEP27295.1| hypothetical protein GCWU000342_01989 [Shuttleworthia satelles DSM
           14600]
          Length = 405

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 108/292 (36%), Gaps = 35/292 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +     +K+  ++I  +  ++ + +  +         ++      +++      +     
Sbjct: 110 MEILKNDKLGARSIDSIKPSDAKEWAIRMSENGFAYSTINNYKRSLRASFYIAIQDDYVR 169

Query: 110 ESNI-LNMRNLKKSNSLPRA-LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     +  +   +++P+  L  +Q   L+D        ++  +  +N   + +L   G
Sbjct: 170 KNPFDFQLNTVIDDDTVPKTILTLEQEARLLDF------AKSDTVYHKNYDEILILLKTG 223

Query: 168 LRISEALSLTPQNIMDDQSTLRIQG----------------KGDKIRIVPLLPSVRKAIL 211
           LRISE   +T  ++  +   + +                       R VP++    +A+ 
Sbjct: 224 LRISELCGMTVTDLDFENHLILVNHQLLRNTELGYYIETPKTKSSERQVPMVEVTCQALK 283

Query: 212 EYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTA 262
               +   +  + I      LF    G P     F   +R L +         LP   T 
Sbjct: 284 RVLAVQNQNECVEIDGYSNFLFLNRNGYPKTACDFNSILRNLIKKYNKCHEEKLP-HITP 342

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           HTLRH+F T+  + G + +++Q I+GH  ++ T   Y +    +  + M  +
Sbjct: 343 HTLRHTFCTNCANAGMNPKALQYIMGHANITMTLNYYAHATCNSAMEEMKRL 394


>gi|330971325|gb|EGH71391.1| Phage integrase [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 286

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 104/258 (40%), Gaps = 21/258 (8%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T ++Y+ D   F   +        T    R ++ + + A+ ++ + + +   +++R L
Sbjct: 39  PRTRRAYQTDLEDFCSSVGL-----ATADEFRMVTRSHVLAWRAQLKKRGLAGSTIRRKL 93

Query: 93  SGIKSFLKYLKKRKITT-ESNILNMRNLKKSN---SLPRALNEKQALTLVDNVLLHTSHE 148
           S + S   +L +       + +  ++           P AL + QA  L+D         
Sbjct: 94  SALASLFDHLLESNAVAGGNPVHGIKRPMIETNEGKTP-ALGDHQAKALLD-----APDA 147

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSV 206
           T     R  AIL +L   GLR  EA  L   ++++ +    L I GKG K+R +P+ P  
Sbjct: 148 TTLKGLRGRAILAVLLYHGLRREEAAQLLVNHLVERRGIKHLVIHGKGSKVRYLPVHPMA 207

Query: 207 RKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-STTA 262
              +L Y++     L      + LPL    +G  +        +    +  G+ +     
Sbjct: 208 MDRLLSYWERSGHHLVNSKGAMFLPLRHWTKGVGVTANGIYTLVEAYAKQAGIQVEGLGV 267

Query: 263 HTLRHSFATHLLSNGGDL 280
           + LR + AT+ L +  D+
Sbjct: 268 YGLRATAATNALEHEADI 285


>gi|239631499|ref|ZP_04674530.1| site-specific tyrosine recombinase XerS [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|239525964|gb|EEQ64965.1| site-specific tyrosine recombinase XerS [Lactobacillus paracasei
           subsp. paracasei 8700:2]
          Length = 358

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 143/359 (39%), Gaps = 47/359 (13%)

Query: 14  LLKERQNWL-QNLEIERGL--SKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIR 64
           +L    +++    + ++ +  +  TL  Y    ++FL +L      A  + + + +  + 
Sbjct: 1   MLPALPDYIQDYYQSQKAIPIADSTLYQYLHFYQEFLNWLINSGVTAASSPQTVPLTVLE 60

Query: 65  QLSYTEIRAFISKR--------RTQKIGDRSLKRSLSGIKSFLKYLKKR----------- 105
            LS  + +AF++            +++  RS+   L GIK+  ++L +            
Sbjct: 61  HLSLRDAQAFMAYLLERPSKTHHNKRMTRRSVALRLVGIKALYRFLTEESEPHADGEPYF 120

Query: 106 --------KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA--- 154
                   K+ T +   + RN K    L     + + L  +D                  
Sbjct: 121 YRNVWNKVKLKTHTETASYRNHKLQEMLFVDGEDAKFLQWLDQSYAQQLQAKPRRYFEAT 180

Query: 155 --RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
             RN A++ LL+G G+R+SE +++  +++  D+ T+++  KG+    V     +   +  
Sbjct: 181 KVRNLAMIALLFGSGVRVSELVNMNLEDLNMDRHTVQVVRKGNFQDRVNFADWIDPYVQA 240

Query: 213 YYDLCPFDLNL-NIQLPLF---RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           Y       +       PLF    G +   +     + + ++     G    +T H  RH+
Sbjct: 241 YLTQRAAIIGYQKPTSPLFVTVVGQKINRIRQNTIEAFFKRYTTDYG--RPSTPHKARHT 298

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
             T++ +   D++ +   LG    S T +Y N++ K+G + + E+ +    +  +  ++
Sbjct: 299 LGTNIYTVTKDVQQVADQLGQTTTSATDLYINLSDKSGKEALREVSETAAKATDRGHEQ 357


>gi|288801960|ref|ZP_06407401.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica D18]
 gi|288335395|gb|EFC73829.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica D18]
          Length = 281

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 107/287 (37%), Gaps = 34/287 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            L+K T+ SY      FL                ++++   + A+      +    +++ 
Sbjct: 27  NLAKNTITSYLWTVDYFLNHY-------------KEVNKKNLLAYKGYL-VENFKPQTVN 72

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             L  I  +L++ K+ K+        ++ +K        L  +  ++  D   L T  +T
Sbjct: 73  LRLQAINKYLEFTKQEKL-------KVKFVKVQQK--NFL--ENVISDADYKFLKTKLKT 121

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              D     I++ +   G R+SE L +  +++      L +  KG KIR + +  ++R  
Sbjct: 122 DGYDEW-YFIVWFMAATGARVSELLHIKAEHVQV--GYLDLYSKGGKIRRLYIPKTLRIE 178

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHS 268
             ++               +F    G+ +      + ++      GL       H+ RH 
Sbjct: 179 ATKWIKEKEL-----SSGYIFLNRFGQRITTRGIAQQLKHFAEKYGLNRDVVYPHSFRHR 233

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           FA + L    DL  +  ++GH  + TT+IY    +      +  + +
Sbjct: 234 FAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVNRVVN 280


>gi|149919028|ref|ZP_01907513.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
 gi|149820181|gb|EDM79600.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
          Length = 363

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 60/297 (20%), Positives = 116/297 (39%), Gaps = 32/297 (10%)

Query: 33  KLTLQSYECDTR-QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
             T +S E   R   + F  +   + I  + I +   T+++ +           ++L   
Sbjct: 74  PSTQRSKERVLRLHLIPFFGYMRLDAIGPRHIERYKATKLKDY---------SRKTLNNH 124

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L+ ++  L+  ++  +  +    ++R LK +    R L+  +A  L++            
Sbjct: 125 LTILRKLLETAREWGLIDKVP--SIRWLKAAKPEFRWLDFAEAERLLEASRCEPEW---- 178

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----------KGDKIRIVP 201
                  ++ L    GLR  E L+L  Q++  +   + ++           K  + R VP
Sbjct: 179 -----RMMILLGLRTGLRQGELLALRWQDVCFEARRIAVRQAVAEGILGTPKSGRAREVP 233

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           L P+     + +        +  +   L     G+ L  G+ +  +R+ R    L     
Sbjct: 234 LSPATLAEFVRHQARYRHLRSPWVFCQLDGDHAGEMLTKGMCKWPLRRARDRADLEA-LG 292

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
            H LRHSFA+HL   G  L++IQ +LGH  +  T  Y ++      D +  +  Q H
Sbjct: 293 WHDLRHSFASHLAMRGVPLKAIQELLGHSTIEMTMRYAHLAPSTLIDAVAALDPQQH 349


>gi|237711591|ref|ZP_04542072.1| integrase [Bacteroides sp. 9_1_42FAA]
 gi|229454286|gb|EEO60007.1| integrase [Bacteroides sp. 9_1_42FAA]
          Length = 380

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 94/262 (35%), Gaps = 33/262 (12%)

Query: 63  IRQLSYTEIRAFISKRRT-------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           +R L       +I   R+       + +  ++     + +++ L    + K+   +    
Sbjct: 133 LRDLDKQFYLDYIDWLRSSCKTAWGKPVSPKTAHSYYTTLRTALNEAVREKLIESNPWYK 192

Query: 116 MR---NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           +     +K   S    L  ++   ++          T + +            CGLRIS+
Sbjct: 193 LEMTEKIKVPESKRDFLTIEEIKKMI---------ATPFFNEHVRQAYLFSCFCGLRISD 243

Query: 173 ALSLTPQNIMDDQSTL---RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
              L  ++I           +  K      +PL     K + E  D  P DL       +
Sbjct: 244 IRKLRWRDISISGGQWLVSVVMTKTTNPVYIPLSSQAVKWLPERKDCAPEDL-------V 296

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F G+     N G     ++      G+  + T HT RHS A  LL+ G D+ ++  ILGH
Sbjct: 297 FGGLP----NAGNLCISLKNWADKAGVKKNVTFHTARHSCAVLLLTLGADIYTVSKILGH 352

Query: 290 FRLSTTQIYTNVNSKNGGDWMM 311
             +  TQ+Y  +  K   D + 
Sbjct: 353 RSVRATQVYAKIVDKKKDDAIA 374


>gi|229071996|ref|ZP_04205206.1| Integrase/recombinase [Bacillus cereus F65185]
 gi|228711155|gb|EEL63120.1| Integrase/recombinase [Bacillus cereus F65185]
          Length = 322

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 109/291 (37%), Gaps = 27/291 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GL   T+  YE     F+             Q +++L+   I  ++S      + +++  
Sbjct: 47  GLRDRTISDYELHVGHFMSV--------TGAQFLQELTVEHIYLWLSSM---NVSNQTKL 95

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             L  +K+FL           +    ++ +K  + +     +++   L   + L     T
Sbjct: 96  TRLKCLKAFLGRCFDNGWIEFNFWKGVK-IKVDSPVKEGATDREINLLFSVLDL-----T 149

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG--KGDKIRIVPLLPSVR 207
           ++I+ R++A + L+Y  G+R+     L  +++  +   LRI G    +   I      V 
Sbjct: 150 RFIELRDAASVLLMYQTGIRVGTLSQLEHKHVNLENKVLRIDGGIIKNHESIHLPFDDVL 209

Query: 208 KAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPL----NPGVFQRYIRQLRRYLGLPLST 260
             +L         +          LF    G  +          + + +  +  GL  + 
Sbjct: 210 ARVLGALMKQNDIIRKECHVKNDYLFITKNGGRIATSPTNNNITKRLSKHSKDYGL-KNI 268

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             H LR  FA +LL  G ++  I   LGH  L+ T  Y +++ +   + + 
Sbjct: 269 NPHALRRGFAKNLLKKGANIALISKALGHSDLAVTTRYLHLDKEEVAESLR 319


>gi|146301334|ref|YP_001195925.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146155752|gb|ABQ06606.1| Bacteroides conjugative transposon integrase-like protein
           [Flavobacterium johnsoniae UW101]
          Length = 419

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/311 (16%), Positives = 115/311 (36%), Gaps = 31/311 (9%)

Query: 8   EIVSFELLKERQNWLQNLEI----ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           ++++ +  K ++++++ +          S  ++     +  +   FL  ++   +    I
Sbjct: 117 KLLAEQKEKGKEDFIKYVAAVAAKRHNRSSKSI---RINWERLAEFLKSFSNGSLNFSQI 173

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKR-----SLSGIKSFLKYLKKRKITTESNILNMRN 118
                 + + F+           ++ R       +  K+ +K        T      ++ 
Sbjct: 174 DSRMAEDFKLFLLGAPQGGGKKGTISRNTAGTYFAIFKAAVKQAFIDGYLTVDLSSKIKG 233

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           + +  S    L  ++   L        S + +    + +A+   L   GLR S+   L  
Sbjct: 234 IPEEESRREYLTIEELNAL-------ASTDCEKDVLKRAALFSAL--TGLRHSDIQKLRW 284

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           + I  +    ++     K + V  +P  ++A+    +       +   LP          
Sbjct: 285 KEIAVEDGMAKLHFTQKKTKGVEYMPISQQALQLCGEPRLPGQLVFEDLP---------- 334

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +P    R +++     G+  + T H  RH+FAT  LS+G D+ ++  +LGH  + TTQIY
Sbjct: 335 DPSWISRPLKKWVLSAGIKKNITFHCFRHTFATLQLSSGTDIYTVSKMLGHTNVKTTQIY 394

Query: 299 TNVNSKNGGDW 309
             V  +     
Sbjct: 395 AKVVDEKKNKA 405


>gi|319902259|ref|YP_004161987.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319417290|gb|ADV44401.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 388

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 105/253 (41%), Gaps = 19/253 (7%)

Query: 63  IRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            R+L+   +  ++   + +    + + +R++S IK ++    ++    E+       +K+
Sbjct: 144 FRELTPDYLSDYLIYMKKELGNTEITAQRNMSTIKIYVTAAYRKGYIEENPFQEFH-IKR 202

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
             S    L E++ +  V      T  E   +     A    +    + I++A  L  + +
Sbjct: 203 IKSDVDYLTEEELMQFVHLYYQRTLPEKLQLTL---AFFLFMCFTSMHITDARMLCIEQV 259

Query: 182 MDDQST---LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
            ++  T   ++ +    +   +P+     K + E+            +  LFR ++    
Sbjct: 260 NNNVLTYYRVKNRNCKPEPIKIPMPIPALKLLEEW-------AEDREEGRLFRNVQCD-- 310

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              V  R ++ + + LG+    +A T RH+FAT  L    DL S+Q +LGH  +  T IY
Sbjct: 311 --QVVNRQLKAIAKELGINKKISAKTGRHTFATIYLRKTKDLSSLQKLLGHSNIRETMIY 368

Query: 299 TNVNSKNGGDWMM 311
            +V  ++  + M 
Sbjct: 369 AHVMDESKREGMQ 381


>gi|313158322|gb|EFR57724.1| phage integrase, N-terminal SAM domain protein [Alistipes sp. HGB5]
          Length = 268

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 113/297 (38%), Gaps = 35/297 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +N+   L  +  +++ T+ +Y    +++        +  + +           + ++  
Sbjct: 3   IENFETYLR-QGNMAENTIAAYRYAVKEYYSRHKELNKRNLLV----------YKTYLI- 50

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +K   +++   +  +  +L Y+ K ++        ++++K        L  +  ++ 
Sbjct: 51  ---EKFKPKTVNLRIQAMNKYLDYMNKSRL-------RLKSVKVQQR--SYL--ENVISN 96

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            D   L    + +        ++  L   G R+SE + +  +++        I  KG KI
Sbjct: 97  ADYAFLKNKLKKEENQEW-YFVVRFLAATGARVSELIQMKVEHVQI--GYFDIYTKGGKI 153

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R + +  S+RK   E+ +             LF    G+ +      + ++      GL 
Sbjct: 154 RRIYIPKSLRKEATEWLNSTN-----RTSGYLFLNRFGERITTRGIAQQLKNYATKYGLN 208

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                 H+ RH FA + L    D+  +  ++GH  + TT+IY   +S    + + +I
Sbjct: 209 EKVVYPHSFRHRFAKNFLEKFNDISLLADLMGHESIETTRIYLRRSSAEQQEIVDKI 265


>gi|258447338|ref|ZP_05695484.1| transposition regulatory protein tnpB [Staphylococcus aureus A6300]
 gi|257853864|gb|EEV76821.1| transposition regulatory protein tnpB [Staphylococcus aureus A6300]
          Length = 630

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/286 (20%), Positives = 107/286 (37%), Gaps = 24/286 (8%)

Query: 38  SYECDTRQ-FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           SY  D  Q    F  F   +   +Q + QL+  EI A++S+     I   ++   +S ++
Sbjct: 236 SYVSDIAQRLKEFFNFLDMKFKQVQRVHQLTRVEIEAYLSELNMMGIKPSTITGRISILE 295

Query: 97  SFLKYLKKRKITTESNILNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
                L + +     + + + +    K   + PR ++E   L  +++ L           
Sbjct: 296 GLFSTLLRLEWDDVPSKILIYSEDYPKIPRAKPRFIDE-FVLEQLNSHLDKLPE------ 348

Query: 154 ARNSAILYLLYGCGLRISEALSLT----PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              + +  ++  CG+RISE  +L      ++   D      Q K  K  IVP+   V  A
Sbjct: 349 -YIATMTMIVQECGMRISELCTLKKGCLLEDKDGDFFLKYYQWKMKKEHIVPISKEV--A 405

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST------TAH 263
           +L                 LF    G PL    F+  + +L     +   +       AH
Sbjct: 406 LLIKVREDKVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKSGEIYRFHAH 465

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             RH+  T +++NG     +Q  LGH     T  Y ++  +   + 
Sbjct: 466 AFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFDETLKNE 511


>gi|302023570|ref|ZP_07248781.1| hypothetical protein Ssui0_02736 [Streptococcus suis 05HAS68]
          Length = 202

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/148 (33%), Positives = 74/148 (50%), Gaps = 5/148 (3%)

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
            GLRISE  +L   NI  +  T++I  KG K+R++ +      ++LE Y         + 
Sbjct: 40  TGLRISELCNLKLDNINLENRTIQILEKGKKVRLLYIGNDETLSLLEDYIAHHC----SH 95

Query: 226 QLPLFRGIRGK-PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
              LF  ++    L     +  ++ +   L L    T H  RHSFAT LL NG D+R IQ
Sbjct: 96  SSYLFTSVKNDDHLKEQSVRLSLKNISHSLQLKKHITPHMFRHSFATMLLDNGVDIRQIQ 155

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMME 312
            +LGH  ++ TQIYT+V+     + + E
Sbjct: 156 HLLGHSNINVTQIYTHVSQSKQVEILSE 183


>gi|295443920|dbj|BAJ06390.1| transposase B from transposon Tn554 [Staphylococcus aureus]
          Length = 609

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/286 (20%), Positives = 107/286 (37%), Gaps = 24/286 (8%)

Query: 38  SYECDTRQ-FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           SY  D  Q    F  F   +   +Q + QL+  EI A++S+     I   ++   +S ++
Sbjct: 215 SYVSDIAQRLKEFFNFLDMKFKQVQRVHQLTRVEIEAYLSELNMMGIKPSTITGRISILE 274

Query: 97  SFLKYLKKRKITTESNILNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
                L + +     + + + +    K   + PR ++E   L  +++ L           
Sbjct: 275 GLFSTLLRLEWDDVPSKILIYSEDYPKIPRAKPRFIDE-FVLEQLNSHLDKLPE------ 327

Query: 154 ARNSAILYLLYGCGLRISEALSLT----PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              + +  ++  CG+RISE  +L      ++   D      Q K  K  IVP+   V  A
Sbjct: 328 -YIATMTMIVQECGMRISELCTLKKGCLLEDKDGDFFLKYYQWKMKKEHIVPISKEV--A 384

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST------TAH 263
           +L                 LF    G PL    F+  + +L     +   +       AH
Sbjct: 385 LLIKVREDKVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKSGEIYRFHAH 444

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             RH+  T +++NG     +Q  LGH     T  Y ++  +   + 
Sbjct: 445 AFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFDETLKNE 490


>gi|304383251|ref|ZP_07365721.1| integrase [Prevotella marshii DSM 16973]
 gi|304335619|gb|EFM01879.1| integrase [Prevotella marshii DSM 16973]
          Length = 306

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 103/298 (34%), Gaps = 20/298 (6%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
            +Y+       +   F  ++ +   TI  ++      +    + + +   ++ R L  + 
Sbjct: 18  STYQNLLYSDKLLTEFVKDKGMMDITISAITEDLFEEYGFYLKKRGLATATMNRYLCWLS 77

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
             +     ++I   +   N +  K    + R L +     L+   ++    E        
Sbjct: 78  RLMYRAVSQRIIRCNPFENAKYEKTEQKI-RFLQKSDVAKLMALRVIDKEAEQA------ 130

Query: 157 SAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRI-QGKGDKIRIVPLLPSVRKAILE 212
             +       GL I++   L   +I    D Q  +R  + K     IVPL P     I +
Sbjct: 131 RRMFIFSCFTGLAIADMEHLQLGHIQTAADGQKYIRKERQKTKVEFIVPLHPIAEAIINQ 190

Query: 213 Y-----YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                        +       +F        +  V    +  + +  G+    + H  RH
Sbjct: 191 CKEEQPCMKEMQTVKEKGDDFIF----HCTCSRSVMSAKLSIVGKACGIRERLSYHMARH 246

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           +F T  LS G  + SI  ++GH  +S+TQIY  V      + M  +  +     T+++
Sbjct: 247 TFGTLSLSAGIPIESIAKMMGHASISSTQIYAQVTDNKISEDMDRLIRKHQTKETKEE 304


>gi|331697265|ref|YP_004333504.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326951954|gb|AEA25651.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
          Length = 573

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/317 (20%), Positives = 122/317 (38%), Gaps = 25/317 (7%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           V   +    +++LQ +     L   T+++ E   R+F + +     E   +  +R+    
Sbjct: 174 VPTAIATTMRDYLQQITTT--LRPGTVKNAELTLREFALLVTAEDPETRCVANLRRKHIE 231

Query: 70  EIRAFISKR---RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM----RNLKKS 122
             + ++ +R   R   +   +++  LS ++ F +       T +     +          
Sbjct: 232 RYKTWLLERPAARGGPLHRHTVRDRLSKLRGFFR-RLDEWDTEDRPARQLVFDSDFPIAD 290

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             LPR                  +      D      + +L   G+R SE L LT   ++
Sbjct: 291 EPLPRF-------LDDAAAAKLLAAARNDPDPFARLAIEILARTGMRRSEMLGLTIDAVV 343

Query: 183 DDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
              S   ++   GK    R VPL P ++  I ++    P  L  +    L     G+P+N
Sbjct: 344 QIGSAYWLRVPVGKMHTDRYVPLHPQLKALIDDWLARRPEGLRSD----LLFTDHGRPVN 399

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               +  +R      GL    T H LRH+ AT  ++ G  L +I ++LGH  LS T++Y 
Sbjct: 400 ASRIEAAVRNAADRAGLGR-VTPHQLRHTLATQAINRGMSLEAIAALLGHRSLSMTRVYA 458

Query: 300 NVNSKNGGDWMMEIYDQ 316
            + ++   D    + ++
Sbjct: 459 RIANRTVADEYFAVSER 475


>gi|299141756|ref|ZP_07034891.1| integrase [Prevotella oris C735]
 gi|298576607|gb|EFI48478.1| integrase [Prevotella oris C735]
          Length = 406

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 70/322 (21%), Positives = 132/322 (40%), Gaps = 37/322 (11%)

Query: 14  LLKERQNWL----QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLS 67
           LL+    +L    + + I+R L    L++Y+      L  L  Y ++K  +  I   QL 
Sbjct: 110 LLESFGEYLTQTKERIGIDRALKTFKLRTYQ------LSLLREYVQKKHKVSDIPLSQLD 163

Query: 68  YTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
            T I  F       +++   S+  +LS +++ ++   K+ +      L   + ++    P
Sbjct: 164 KTFIEGFEYYLTIDRRLKRSSISSALSTLQTIVRMAVKKGVLDFYPFLGY-SYERPKGEP 222

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R++ +++   ++D   L    E   I      +       GL IS+  +L  +NI+ ++ 
Sbjct: 223 RSITQEELQRIID---LEIEWENYRIV---RDLFVFSCFSGLAISDVRNLREENIVLEEG 276

Query: 187 TLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
            L I+G   K      V +LP     I  Y                  G         + 
Sbjct: 277 ELCIKGRRMKTKTPYRVQVLPPAWAIIERYRGKRA-------------GFVFDVPTTDII 323

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              +  ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQ+Y  V+
Sbjct: 324 LNGMHYIQRNIGMESPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVS 383

Query: 303 SKNGGDWMMEIYDQTHPSITQK 324
           S+     M ++  +   + T K
Sbjct: 384 SERIHRDMQKVQQRIQDTFTLK 405


>gi|227535100|ref|ZP_03965149.1| site-specific tyrosine recombinase XerS [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|227187315|gb|EEI67382.1| site-specific tyrosine recombinase XerS [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
          Length = 370

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/372 (17%), Positives = 147/372 (39%), Gaps = 48/372 (12%)

Query: 1   MEGNNLPEIVSFELLKERQNWL-QNLEIERGL--SKLTLQSYECDTRQFLIFL------A 51
           M   N  +++   +L    +++    + ++ +  +  TL  Y    ++FL +L       
Sbjct: 1   MSTQNYSKLI-HTMLPALPDYIQDYYQSQKAIPIADSTLYQYLHFYQEFLNWLINSGVTV 59

Query: 52  FYTEEKITIQTIRQLSYTEIRAFISKR--------RTQKIGDRSLKRSLSGIKSFLKYLK 103
             + + + +  +  LS  + +AF++            +++  RS+   L GIK+  ++L 
Sbjct: 60  ASSPQTVPLTVLEHLSLRDAQAFMAYLLERPSKTHHNKRMTRRSVALRLVGIKALYRFLT 119

Query: 104 KR-------------------KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           +                    K+ T +   + RN K    L     + + L  +D     
Sbjct: 120 EESEPHADGEPYFYRNVWNKVKLKTHTETASYRNHKLQEMLFVDGEDAKFLQWLDQSYAQ 179

Query: 145 TSHETKWIDA-----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                          RN A++ LL+G G+R+SE +++  +++  D+ T+++  KG+    
Sbjct: 180 QLPAKPRRYFEATKVRNLAMIALLFGSGVRVSELVNMNLEDLNMDRHTVQVVRKGNFQDR 239

Query: 200 VPLLPSVRKAILEYYDLCPFDLNL-NIQLPLF---RGIRGKPLNPGVFQRYIRQLRRYLG 255
           V     +   +  Y       +       PLF    G +   +     + + ++     G
Sbjct: 240 VNFADWIDPYVQAYLTQRAAIIGYQKPTSPLFVTVVGQKINRIRQNTIEAFFKRYTTDYG 299

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
               +T H  RH+  T++ +   D++ +   LG    S T +Y N++ K+G + + E+ +
Sbjct: 300 --RPSTPHKARHTLGTNIYTVTKDVQQVADQLGQTTTSATDLYINLSDKSGKEALREVSE 357

Query: 316 QTHPSITQKDKK 327
               +  +  ++
Sbjct: 358 TAAKATDRGHEQ 369


>gi|111024894|ref|YP_707314.1| integrase/recombinase [Rhodococcus jostii RHA1]
 gi|110823873|gb|ABG99156.1| probable integrase/recombinase [Rhodococcus jostii RHA1]
          Length = 399

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/312 (18%), Positives = 107/312 (34%), Gaps = 34/312 (10%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
            + RG S +T+++   D  + L  L          + + + +  ++   +       +  
Sbjct: 83  RVVRGFSAVTIENETGDLERMLAALG---------KPVWEATADDVDRVVGAMAADGLLA 133

Query: 86  RSLKRSLSGIKSFLKYLKKR---------KITTESNILNMRNLKK-----SNSLPRALNE 131
            + +R +  + SF ++L  R          +   + I      +         LP   + 
Sbjct: 134 STRRRYVQALSSFHRFLITRRAGEIEALFGVRLTNPIDEFNASRHVGDDSPRLLPPP-SV 192

Query: 132 KQALTLVDNVLLHTSHETKW-IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---T 187
            +     D +        K+   AR+ A+   LY  GLR  EA  L   ++   Q     
Sbjct: 193 SRVAVFFDFLKERIGSARKYAPAARDYALFRTLYHAGLRSDEASKLEIADVYFGQGPFGK 252

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVF 243
           L ++         P    V         +  +  ++  +LP    LF    G  +  G  
Sbjct: 253 LHVRFGKGARTSGPRPRWVPMLDHLDLVVRWYLEDVRPKLPESAVLFCDQSGGAMARGTI 312

Query: 244 QRYIRQL--RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  +R L    +       + H LR + ATH    G DL +IQ +LGH+ + +T  Y   
Sbjct: 313 RNRLRYLQDLEHCSPADRFSPHALRRACATHNYERGVDLVAIQQMLGHWTVGSTMRYVRP 372

Query: 302 NSKNGGDWMMEI 313
           +     D     
Sbjct: 373 SETFIEDAYRSA 384


>gi|237714130|ref|ZP_04544611.1| transposase [Bacteroides sp. D1]
 gi|262407180|ref|ZP_06083729.1| transposase [Bacteroides sp. 2_1_22]
 gi|294646950|ref|ZP_06724569.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294809675|ref|ZP_06768364.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229445954|gb|EEO51745.1| transposase [Bacteroides sp. D1]
 gi|262355883|gb|EEZ04974.1| transposase [Bacteroides sp. 2_1_22]
 gi|292637720|gb|EFF56119.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294443099|gb|EFG11877.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 409

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 116/292 (39%), Gaps = 25/292 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSLKR 90
           +  TL +Y    R    F+      K+      QL+   IR +       +     +L+ 
Sbjct: 130 APTTLSTYLFTYRTLSEFIKAKF--KVPDLVFGQLNEQFIRDYQDFILLEKGYAVDTLRG 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L+ +K   +   K   + + +  + +  K+  + P+A++ +    L D  +     E +
Sbjct: 188 YLAILKKICRIAYKEGHSEKYHFCHFKLPKQKETTPKAISRENFEKLRDLEI----PEKR 243

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRI---QGKGDKIRIVPLLPSV 206
                   +       G   ++A+S+T +N   DD+ +L +   + K D +  V LLP  
Sbjct: 244 RSHVITRDLFLFACYTGTAYADAVSITRKNLFRDDEGSLWLKYQRKKTDYLGRVKLLPEA 303

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              I +Y D        + +  LF      P +    +  ++ LR   GL      H  R
Sbjct: 304 VALIEKYRD--------DTRETLFP-----PQDYHTLRANMKSLRLMAGLSQDLVYHMGR 350

Query: 267 HSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           HSFA+ + L  G  + +I  +LGH  + TTQIY  V  K   + M    + T
Sbjct: 351 HSFASLVTLEEGVPIETICKMLGHSNIKTTQIYARVTPKKLFEDMDRFVEAT 402


>gi|332827492|gb|EGK00238.1| hypothetical protein HMPREF9455_03377 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 448

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/295 (19%), Positives = 103/295 (34%), Gaps = 33/295 (11%)

Query: 33  KLTLQSY------ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
             T  SY            FL     Y    I I+ I      +  A++     +K+   
Sbjct: 127 DRTEGSYEQLIINRRRIEMFLR--DRYNLSDIPIKEIEPQFIEDYYAYL--LEERKLAGS 182

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           +L  +++ +K  +   +++     +     R  K        L E +    +   L    
Sbjct: 183 TLLTAVTKLKQIMLIAQRKGYIHVNPFAGFR-FKAKTRDRGYLTEDELKRFMSVELRRYK 241

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKGDKIRIVPL 202
                       I       GL  S+   LT  +       +   +  + K +    V L
Sbjct: 242 QRQV------RDIFVFQAFTGLAYSDIKKLTFDDIQTSFDGELWLIAKRKKTNATFYVKL 295

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           LP  +K I +Y  +       N   P+       P       R ++++ +  G+    T 
Sbjct: 296 LPVAKKLIEQYRLVA----RSNYIFPV-------PTFGDSMNRCLQRIAKLCGITKRITT 344

Query: 263 HTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           H  RHSFAT   LS G  + ++  +LGH  ++TTQIY  + ++     M  + D+
Sbjct: 345 HMARHSFATTVCLSKGVPIETVSQMLGHSCITTTQIYAKITNEKISKDMAALTDK 399


>gi|327398855|ref|YP_004339724.1| integrase family protein [Hippea maritima DSM 10411]
 gi|327181484|gb|AEA33665.1| integrase family protein [Hippea maritima DSM 10411]
          Length = 370

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 56/282 (19%), Positives = 117/282 (41%), Gaps = 17/282 (6%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           +SY  +    L    F   +K T+  I  L   +++    +    +   R+++ +++ ++
Sbjct: 99  KSYNRE-ESLLRLWIFPIIDKKTLNNISPLDIEKVKK---EMIKNEKAPRTIEYAIAVMR 154

Query: 97  S-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
             F K ++       +    ++  KK N   R L +++A  L+         E K    +
Sbjct: 155 QVFNKAIEWGFYFGANPAAKVKKPKKDNRRMRFLTKEEAEKLL--------SELKKHSIQ 206

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
              + YL    G+R  E  +LT Q+I      + I+   +    V  +    + +L    
Sbjct: 207 VYEMAYLSLYTGMRFGEIANLTWQDIDFQNGIITIKDPKNSESRVAYMTDSLRDLLYAKY 266

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL---STTAHTLRHSFATH 272
                 N +  +    G   K + PG F+  +R+L    G+         HTLRH+FA+ 
Sbjct: 267 KREKPKNSSGFVFHRNGKPYKQI-PGTFKTVVRKLGLNDGITDPRDKVVFHTLRHTFASW 325

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           L   G  + +I+ ++GH  L+ T+ Y+++      + + +++
Sbjct: 326 LAIQGTPIYTIKELMGHKTLAMTERYSHLIPDAKREAVEKLF 367


>gi|217033697|ref|ZP_03439124.1| hypothetical protein HP9810_5g39 [Helicobacter pylori 98-10]
 gi|216943886|gb|EEC23323.1| hypothetical protein HP9810_5g39 [Helicobacter pylori 98-10]
          Length = 370

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/286 (22%), Positives = 126/286 (44%), Gaps = 21/286 (7%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y     +F  +      +KI++++++ +    +  F+S   T  +   + K     +
Sbjct: 72  INTYALPLLKFHEYT-----KKISLKSLKSIDEVLLAEFLS-VYTGGLSLATKKNYRIAM 125

Query: 96  KSFLKYLKKRK-------ITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLLHTS 146
                Y+ K+              + N+  + +   N LP  LN ++    ++   +   
Sbjct: 126 LGLFSYIDKQNQDENEKSYIYNITLKNISGVNQSAGNKLPTHLNNEELEKFLEG--IDKI 183

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLP 204
             +  + ARN  ++ ++   G+R +EAL L  ++   +    T+ I+GKGDK R V L  
Sbjct: 184 EMSAKVRARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLKA 243

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AH 263
              +++L+ + +      +   L LF   +G  L      + + ++  + GL      AH
Sbjct: 244 FHIESLLKEWLMERELYPVKNDL-LFCNQKGSALTQAYLYKQVERIINFAGLRREKNGAH 302

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            LRHSFAT L     DL  +Q  LGH  L+T++IYT+ + +   + 
Sbjct: 303 MLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 348


>gi|15923045|ref|NP_370579.1| transposase B [Staphylococcus aureus subsp. aureus Mu50]
 gi|15924648|ref|NP_372182.1| transposase B [Staphylococcus aureus subsp. aureus Mu50]
 gi|15925758|ref|NP_373291.1| transposase B for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|15926489|ref|NP_374022.1| transposase B for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|15927237|ref|NP_374770.1| transposase B for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|15927726|ref|NP_375259.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus N315]
 gi|15928180|ref|NP_375713.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus N315]
 gi|49482301|ref|YP_039525.1| transposase B 1 [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49483902|ref|YP_041126.1| transposase B 2 [Staphylococcus aureus subsp. aureus MRSA252]
 gi|57865839|ref|YP_190049.1| transposase B [Staphylococcus epidermidis RP62A]
 gi|57867120|ref|YP_188797.1| Tn554, transposase B [Staphylococcus epidermidis RP62A]
 gi|57867259|ref|YP_188918.1| Tn554, transposase B [Staphylococcus epidermidis RP62A]
 gi|148266487|ref|YP_001245430.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|148268139|ref|YP_001247082.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150392520|ref|YP_001315195.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150394206|ref|YP_001316881.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156978385|ref|YP_001440644.1| transposase B [Staphylococcus aureus subsp. aureus Mu3]
 gi|156979976|ref|YP_001442235.1| transposase B [Staphylococcus aureus subsp. aureus Mu3]
 gi|254663983|ref|ZP_05143455.1| transposase B [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|255006444|ref|ZP_05145045.2| transposase B [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257428441|ref|ZP_05604839.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257431610|ref|ZP_05607978.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257793728|ref|ZP_05642707.1| transposase [Staphylococcus aureus A9781]
 gi|258411263|ref|ZP_05681540.1| transposase [Staphylococcus aureus A9763]
 gi|258422475|ref|ZP_05685386.1| transposase B 2 [Staphylococcus aureus A9719]
 gi|258448321|ref|ZP_05696446.1| transposase B transposon Tn554 [Staphylococcus aureus A6224]
 gi|258451923|ref|ZP_05699940.1| transposition regulatory protein tnpB [Staphylococcus aureus A5948]
 gi|258454552|ref|ZP_05702518.1| transposase B transposon Tn554 [Staphylococcus aureus A5937]
 gi|282929819|ref|ZP_06336962.1| transposase B from transposon Tn554 [Staphylococcus aureus A10102]
 gi|293503534|ref|ZP_06667381.1| transposase B from transposon Tn554 [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|295407731|ref|ZP_06817516.1| transposase B transposon Tn554 [Staphylococcus aureus A8819]
 gi|295429347|ref|ZP_06821968.1| transposase B transposon Tn554 [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297246796|ref|ZP_06930605.1| transposase B transposon Tn554 [Staphylococcus aureus A8796]
 gi|60415973|sp|P0A053|TNPB_STAAM RecName: Full=Transposase B from transposon Tn554
 gi|60415974|sp|P0A054|TNPB_STAAN RecName: Full=Transposase B from transposon Tn554
 gi|60415975|sp|P0A055|TNPB_STAAU RecName: Full=Transposase B from transposon Tn554
 gi|43728|emb|CAA26961.1| pot. tnpB protein [Staphylococcus aureus]
 gi|5360832|dbj|BAA82202.1| transposaseB [Staphylococcus aureus]
 gi|13699970|dbj|BAB41269.1| transposase B for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|13700703|dbj|BAB42000.1| transposase B for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|13701455|dbj|BAB42749.1| transposase B for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|13701946|dbj|BAB43238.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus N315]
 gi|13702551|dbj|BAB43692.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus N315]
 gi|14021042|dbj|BAB47666.1| transposase B(Tn554) [Staphylococcus aureus]
 gi|14245822|dbj|BAB56217.1| transposase B [Staphylococcus aureus subsp. aureus Mu50]
 gi|14247430|dbj|BAB57820.1| transposase B [Staphylococcus aureus subsp. aureus Mu50]
 gi|27529891|dbj|BAC53828.1| transposase B(Tn554) [Staphylococcus aureus]
 gi|49240430|emb|CAG39081.1| transposase B 1 [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49242031|emb|CAG40730.1| transposase B 2 [Staphylococcus aureus subsp. aureus MRSA252]
 gi|57636497|gb|AAW53285.1| transposase B [Staphylococcus epidermidis RP62A]
 gi|57637778|gb|AAW54566.1| Tn554, transposase B [Staphylococcus epidermidis RP62A]
 gi|57637917|gb|AAW54705.1| Tn554, transposase B [Staphylococcus epidermidis RP62A]
 gi|62815913|emb|CAH17566.1| Tranpsosase B [Staphylococcus aureus]
 gi|147739556|gb|ABQ47854.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|147741208|gb|ABQ49506.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149944972|gb|ABR50908.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|149946658|gb|ABR52594.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156720520|dbj|BAF76937.1| transposase B [Staphylococcus aureus subsp. aureus Mu3]
 gi|156722111|dbj|BAF78528.1| transposase B [Staphylococcus aureus subsp. aureus Mu3]
 gi|221327664|gb|ACM17508.1| transposase B [Staphylococcus aureus]
 gi|238773852|dbj|BAH66415.1| transposaseB [Staphylococcus aureus]
 gi|257275282|gb|EEV06769.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257277664|gb|EEV08348.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257787700|gb|EEV26040.1| transposase [Staphylococcus aureus A9781]
 gi|257839992|gb|EEV64459.1| transposase [Staphylococcus aureus A9763]
 gi|257841541|gb|EEV65979.1| transposase B 2 [Staphylococcus aureus A9719]
 gi|257858416|gb|EEV81294.1| transposase B transposon Tn554 [Staphylococcus aureus A6224]
 gi|257860406|gb|EEV83237.1| transposition regulatory protein tnpB [Staphylococcus aureus A5948]
 gi|257863279|gb|EEV86041.1| transposase B transposon Tn554 [Staphylococcus aureus A5937]
 gi|282167044|gb|ADA81060.1| Transposase B from transposon Tn554 [Staphylococcus aureus]
 gi|282589026|gb|EFB94131.1| transposase B from transposon Tn554 [Staphylococcus aureus A10102]
 gi|285815780|gb|ADC36267.1| Transposase B from transposon Tn554 [Staphylococcus aureus
           04-02981]
 gi|285817341|gb|ADC37828.1| Transposase B from transposon Tn554 [Staphylococcus aureus
           04-02981]
 gi|291095200|gb|EFE25465.1| transposase B from transposon Tn554 [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|294967407|gb|EFG43451.1| transposase B transposon Tn554 [Staphylococcus aureus A8819]
 gi|295126725|gb|EFG56370.1| transposase B transposon Tn554 [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297176347|gb|EFH35622.1| transposase B transposon Tn554 [Staphylococcus aureus A8796]
 gi|302750707|gb|ADL64884.1| transposition regulatory protein TnpB [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|302751485|gb|ADL65662.1| transposition regulatory protein TnpB_2 [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|312828684|emb|CBX33526.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315128351|gb|EFT84363.1| transposase B [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195562|gb|EFU25949.1| transposase B [Staphylococcus aureus subsp. aureus CGS00]
 gi|329727157|gb|EGG63613.1| site-specific recombinase, phage integrase family [Staphylococcus
           aureus subsp. aureus 21172]
 gi|224808|prf||1202257D gene tnpB
          Length = 630

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/286 (20%), Positives = 107/286 (37%), Gaps = 24/286 (8%)

Query: 38  SYECDTRQ-FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           SY  D  Q    F  F   +   +Q + QL+  EI A++S+     I   ++   +S ++
Sbjct: 236 SYVSDIAQRLKEFFNFLDMKFKQVQRVHQLTRVEIEAYLSELNMMGIKPSTITGRISILE 295

Query: 97  SFLKYLKKRKITTESNILNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
                L + +     + + + +    K   + PR ++E   L  +++ L           
Sbjct: 296 GLFSTLLRLEWDDVPSKILIYSEDYPKIPRAKPRFIDE-FVLEQLNSHLDKLPE------ 348

Query: 154 ARNSAILYLLYGCGLRISEALSLT----PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              + +  ++  CG+RISE  +L      ++   D      Q K  K  IVP+   V  A
Sbjct: 349 -YIATMTMIVQECGMRISELCTLKKGCLLEDKDGDFFLKYYQWKMKKEHIVPISKEV--A 405

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST------TAH 263
           +L                 LF    G PL    F+  + +L     +   +       AH
Sbjct: 406 LLIKVREDKVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKSGEIYRFHAH 465

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             RH+  T +++NG     +Q  LGH     T  Y ++  +   + 
Sbjct: 466 AFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFDETLKNE 511


>gi|58337430|ref|YP_194015.1| site-specific tyrosine recombinase XerS [Lactobacillus acidophilus
           NCFM]
 gi|58254747|gb|AAV42984.1| phage integrase-recombinase [Lactobacillus acidophilus NCFM]
          Length = 342

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 120/326 (36%), Gaps = 41/326 (12%)

Query: 32  SKLTLQSYECDTRQFLIFLAF------YTEEKITIQTIRQLSYTEIRAFISKRRTQKI-- 83
           S  T   Y  + R+F  +L             I+  T+  L   +I  +I      K   
Sbjct: 15  SLATTYQYLTEIRRFFNWLRAEGISTAADNRNISTTTLENLRRNDIMLYIDHLGHTKNKQ 74

Query: 84  ----GDRSLKRSLSGIKSFLKYLKKRK-------ITTESNILNMRNLKKSNSLPRALNEK 132
                  ++ RS++ ++S  K+L               + +L + +L  + +L    +  
Sbjct: 75  GRLNSPTTINRSINALRSLFKFLTITADNNNGMPYFDRNVMLKINSLNDTQTLNYRAHVL 134

Query: 133 Q-----------ALTLVDN-----VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           +            L  +D+        H     K    R+ AI+ L+ G G+R+SE   +
Sbjct: 135 ESHMYTGDLKFKFLEFIDHDYENKCNKHAKPGFKRNKERDMAIIALILGTGIRVSECAGV 194

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
             Q++   ++ L +  KG +   VP+       I +Y D+       + +   F   R  
Sbjct: 195 DLQDLNLKEAVLDVTRKGGQKDSVPIAEWTLSYIKQYKDIRTDRYMADQKQTAFFLTRWH 254

Query: 237 ----PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                +     ++ + +     G P   T H LRH+ A+ L     D   +   LG    
Sbjct: 255 NQTRRITANAIEKMVNKYSASFGHP--LTPHKLRHTLASELYEVTKDQVLVAQQLGQKGT 312

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTH 318
           + T +YT+V+ +   D + +I +  +
Sbjct: 313 TATDLYTHVDQRKQRDALNQISNSHN 338


>gi|70568189|dbj|BAE06286.1| transposase B for Tn554 [Staphylococcus aureus]
          Length = 630

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/286 (20%), Positives = 107/286 (37%), Gaps = 24/286 (8%)

Query: 38  SYECDTRQ-FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           SY  D  Q    F  F   +   +Q + QL+  EI A++S+     I   ++   +S ++
Sbjct: 236 SYVSDIAQRLKEFFNFLDMKFKQVQRVHQLTRVEIEAYLSELNMMGIKPSTITGRISILE 295

Query: 97  SFLKYLKKRKITTESNILNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
                L + +     + + + +    K   + PR ++E   L  +++ L           
Sbjct: 296 GLFSTLLRLEWDDVPSKILIYSEDYPKIPRAKPRFIDE-FVLEQLNSHLDKLPE------ 348

Query: 154 ARNSAILYLLYGCGLRISEALSLT----PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              + +  ++  CG+RISE  +L      ++   D      Q K  K  IVP+   V  A
Sbjct: 349 -YIATMTMIVQECGMRISELCTLKKGCLLEDKDGDFFLKYYQWKMKKEHIVPISKEV--A 405

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST------TAH 263
           +L                 LF    G PL    F+  + +L     +   +       AH
Sbjct: 406 LLIKVREDKVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKSGEIYRFHAH 465

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             RH+  T +++NG     +Q  LGH     T  Y ++  +   + 
Sbjct: 466 AFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFDETLKNE 511


>gi|222080267|ref|YP_002540131.1| integrase/recombinase [Agrobacterium vitis S4]
 gi|221738912|gb|ACM39691.1| integrase/recombinase [Agrobacterium vitis S4]
          Length = 246

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 99/241 (41%), Gaps = 11/241 (4%)

Query: 10  VSFELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++ +     Q +L  +L   RG S  T+ SY    +  +I+L           T+ ++  
Sbjct: 1   MATDFALLLQRFLTSHLAGLRGASPNTVASYRDTFKLLVIYLRDQKAIPPEKLTLNRIDV 60

Query: 69  TEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRK---ITTESNILNMRNLKKSNS 124
             I  F++   +++     +  + L+ I SF  +++ ++   +    +I+ +   K + +
Sbjct: 61  EMITGFLNWLESRRQNSVSTRNQRLAAISSFYNWMQSQEPALMARCQDIMAIPVKKGAQA 120

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
               L  +Q        LL+    T     R++ IL  LY  G R+ E + LT +++   
Sbjct: 121 CVHHLTVEQTR-----CLLNAPDRTTRSGRRDATILATLYDTGARVQELVDLTVRDVRLQ 175

Query: 185 Q-STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           + + + + GKG K R VPL  +    +  Y      D+      P+F   +   L P   
Sbjct: 176 KPAVITLTGKGRKTRHVPLGANTAALLASYLTEFRLDMPGRDGYPVFFNQQHAKLIPACV 235

Query: 244 Q 244
           +
Sbjct: 236 E 236


>gi|167751366|ref|ZP_02423493.1| hypothetical protein EUBSIR_02352 [Eubacterium siraeum DSM 15702]
 gi|167655612|gb|EDR99741.1| hypothetical protein EUBSIR_02352 [Eubacterium siraeum DSM 15702]
          Length = 476

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 60/331 (18%), Positives = 129/331 (38%), Gaps = 51/331 (15%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT---------- 80
             + TL+        +   +  +   +I    + ++S ++++ F +K +T          
Sbjct: 85  YCRHTLR--ITTRTDYENRIYNHIIPEIGKIPLNRMSQSDLQQFYAKEKTDGRKLHAKTY 142

Query: 81  -QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + + DR+++   +  ++ L+   +  +   +  +  +   K     + L + + L  + 
Sbjct: 143 GKGLSDRTIRGIHANCRTALQRAVQDGLIRTNPAVCCKLPPKKAREMQVLTQNEILRFL- 201

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------- 191
                  H+ K        +L L  G G+R  E L+L   ++      LRI+        
Sbjct: 202 -------HQAKEEGYYELFLLEL--GTGMRRGEILALKWSDLNFATGELRIERQVYIIKA 252

Query: 192 -------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                       IR V L PS+ K ++ Y +    +              G+P NP   +
Sbjct: 253 EVIISAPKTKASIRTVILPPSLLKTLVAYKETVDSEWMFPS-----PTDNGRPRNPSSVR 307

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
           + ++ +    G       H LRH+FAT  L NG D++++ +++GH    TT  IY+++  
Sbjct: 308 KRLQLILERAG-CKKVRFHDLRHTFATMALENGMDIKTLSAMIGHVSAETTLNIYSHITD 366

Query: 304 KNGGDWMMEI------YDQTHPSITQKDKKN 328
                  + I       D   P+  ++++K+
Sbjct: 367 TMQRQAAVHIDRKIGGTDARMPTEKREERKD 397


>gi|317504687|ref|ZP_07962651.1| integrase [Prevotella salivae DSM 15606]
 gi|315664191|gb|EFV03894.1| integrase [Prevotella salivae DSM 15606]
          Length = 431

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/290 (18%), Positives = 103/290 (35%), Gaps = 15/290 (5%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           R    F+     + I+I TI +  + E R F+ KR    +   ++  +L  +   +    
Sbjct: 136 RNLREFVENKGVQDISIGTITEDLFEEYRFFLKKR---GLKASTVNSNLCWLSRLMFRAV 192

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
            ++I   +   N +  K+   + R L +   + L+   +     E          +    
Sbjct: 193 SKRIIRCNPFENAKYDKEEKKI-RFLQKSDVMKLMAMKMNDREAELA------RLMFVFS 245

Query: 164 YGCGLRISEALSLTPQNIMD---DQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
              GL IS+  +L  ++I      Q  +R  + K     IVPL P     I         
Sbjct: 246 CFTGLAISDMENLEYKHIQTAAYGQMYIRKERQKTKVEFIVPLHPIAEAIINHCRSEKRR 305

Query: 220 DLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
                        +      +  V    +  + +  G+    + H  RH+F T  LS G 
Sbjct: 306 SEEQQTVKEKDDNLVFHRDCSRSVMDAKLSIVGKACGICQRLSFHMARHTFGTMSLSAGI 365

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
            + SI  ++GH  +S+TQ+Y  V  K     M  +  +      +  ++ 
Sbjct: 366 PIESIAKMMGHASISSTQVYAQVTDKKISKDMDRLIAKQSAKEKETSERE 415


>gi|295840959|dbj|BAJ06846.1| integron integrase intI [uncultured bacterium]
          Length = 284

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/286 (19%), Positives = 107/286 (37%), Gaps = 61/286 (21%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           R  S  T +SY    ++F+ F       ++ I++ ++     I  F+S    +  +   +
Sbjct: 20  RHYSIHTERSYCDWIKRFIFFHRMKERGELFIESGKK-----IERFLSHLAIEGNVAPST 74

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALTLVDNVLLHT 145
             ++++ +    K     K+  ++  L +  ++  K  ++P  L+ ++   ++       
Sbjct: 75  QNQAMNALVFLYK-----KVLEQNLALKIDAVRSVKQKNIPVVLSREEVAAVI------- 122

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLP 204
                 +D     +  LLYG GLRI+EAL L  Q++      + ++ GKG + R+     
Sbjct: 123 ----GIMDGVPRLVAQLLYGSGLRITEALRLRVQDVDFSNKQIVVRSGKGGRDRVTTFPT 178

Query: 205 SVRKAIL------------------------------------EYYDLCPFDLNLNIQLP 228
           ++   +                                     E+     F        P
Sbjct: 179 TIEPLLKDHLNRVRNLHNQDLAAGYGSVYLPNALARKYPNAAVEWGWQYVFPSRGLSVDP 238

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                R   ++P    R I+   +  GL    +AHT RH+FATHLL
Sbjct: 239 RSGKKRRHHVDPSTVNRAIKTAVKRNGLAKKVSAHTFRHTFATHLL 284


>gi|229065157|ref|ZP_04200448.1| Transposition regulatory protein TnpA [Bacillus cereus AH603]
 gi|228716123|gb|EEL67845.1| Transposition regulatory protein TnpA [Bacillus cereus AH603]
          Length = 356

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 60/349 (17%), Positives = 134/349 (38%), Gaps = 80/349 (22%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +++ L+   G S  T ++Y    + F  +L        T +  + +   ++  F+   R
Sbjct: 13  KYIKYLDRT-GKSPNTQKTYCYSLKHFFTYLKD------TNKDYKYIRLEDLVEFVGWLR 65

Query: 80  T--------------QKIGDRSLKRSLSGIKSFLKYLKKRKITTES-------------- 111
           +               K  ++++  +++ I +F  YL + +                   
Sbjct: 66  SPYESSKVTPLQQEKAKRTEKTINLTITVIANFYDYLFRNEEVKNDMMEKLMKQVFTRGN 125

Query: 112 ---------------NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
                          +I N+  LK+       L ++Q   ++              + R+
Sbjct: 126 SRYKSFLHHVNQDKPSIRNILKLKEPRKRVDTLTKEQVQQVLQAT----------TNIRD 175

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQ---STLRIQGKGD---------KIRIVPLLP 204
           + ++ LL+  GLRI EAL+L  ++ + D      +R+  +G+           R + +  
Sbjct: 176 TFLIQLLFETGLRIGEALALFMEDFVFDHAKGHRIRLIDRGELENGAMLKTGEREIYVSQ 235

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLST 260
           S+     +Y      +L L+    +F  +RGK    P+     +   ++L++  G+  + 
Sbjct: 236 SLMDLYDDYLYEVLDELELDSNF-VFVKLRGKDVGKPMEYWNVESLFKRLKKKTGI--NL 292

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGD 308
             H  RH+ AT       D++ +Q  LGH ++ TT  +Y + + ++  +
Sbjct: 293 HPHLFRHTHATIYYQKTKDIKQVQERLGHSQIQTTMNLYLHPSDEDIRE 341


>gi|28465853|dbj|BAC57471.1| transposase B [Staphylococcus aureus]
          Length = 630

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 60/286 (20%), Positives = 106/286 (37%), Gaps = 24/286 (8%)

Query: 38  SYECDTRQ-FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           SY  D  Q    F  F   +   +Q + QL+  EI A++S+     I   ++   +S ++
Sbjct: 236 SYVSDIAQRLKEFFNFLDIKFKHVQRVHQLTRVEIEAYLSELNMMGIKPSTITGRISILE 295

Query: 97  SFLKYLKKRKITTESNILNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
                L + +     + L +      K   + PR ++E   L  +++ L           
Sbjct: 296 GLFSTLHRLEWDDVPSKLLIYPEDYPKIPRAKPRFIDE-FVLEQLNSHLDKLPE------ 348

Query: 154 ARNSAILYLLYGCGLRISEALSLT----PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              + +  ++  CG+RISE  +L      ++   D      Q K  K  IVP+   V  A
Sbjct: 349 -YIATMTMIVQECGMRISELCTLKKGCLLEDKDGDFFLKYYQWKMKKEHIVPISKEV--A 405

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST------TAH 263
           +L                 LF    G PL    F+  + +L     +   +       AH
Sbjct: 406 LLIKVREDKVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKSGEIYRFHAH 465

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             RH+  T +++NG     +Q  LGH     T  Y ++  +   + 
Sbjct: 466 AFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFDETLKNE 511


>gi|52141019|ref|YP_085810.1| integrase/recombinase [Bacillus cereus E33L]
 gi|51974488|gb|AAU16038.1| integrase/recombinase [Bacillus cereus E33L]
          Length = 322

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/291 (17%), Positives = 111/291 (38%), Gaps = 27/291 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GL   T+  YE     F+             + +++L+   I  ++S      + +++  
Sbjct: 47  GLRDRTISDYELHIGHFMSV--------TGAEFLQELTVEHIYLWLSSM---NVSNQTKL 95

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             L  +K+FL           +   +++ +K  + +     +++   L+  + L     T
Sbjct: 96  TRLKCLKAFLGRCFDNGWIEINFWKSIK-IKVDSPVKEGATDREINLLLSILDL-----T 149

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG--KGDKIRIVPLLPSVR 207
           ++I+ R++A + L+Y  G+R+     L  +++  +   LRI G    +   I      V 
Sbjct: 150 RFIELRDAASVLLMYQTGIRVGTLSQLEHKHVNLENKVLRIDGGIIKNHESIHLPFDDVL 209

Query: 208 KAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPL----NPGVFQRYIRQLRRYLGLPLST 260
             +L         +          LF    G  +          + + +  +  GL  + 
Sbjct: 210 ARVLGALMKQNDIIRKECHIKNDYLFITKNGGRIATSPTNNNITKRLSKHSKDYGL-KNI 268

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             H LR  FA +LL  G ++  I   LGH  L+ T  Y +++ +   + + 
Sbjct: 269 NPHALRRGFAKNLLKKGANIALISKALGHSDLAVTTRYLHLDKEEVAESLR 319


>gi|313892498|ref|ZP_07826087.1| site-specific recombinase, phage integrase family [Dialister
           microaerophilus UPII 345-E]
 gi|313119077|gb|EFR42280.1| site-specific recombinase, phage integrase family [Dialister
           microaerophilus UPII 345-E]
          Length = 372

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/295 (19%), Positives = 117/295 (39%), Gaps = 21/295 (7%)

Query: 22  LQNLEIERG-LSKLTLQSYECDT-RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           L  LE+++  + + T   Y+    + F+  L      +I +  I QL       ++    
Sbjct: 80  LHFLELKKNTIKESTFTYYKTHIEKDFIPILKDTPISRIDVNKINQL-----LNYM--LN 132

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLK-KSNSLPRALNEKQALTL 137
            +K    S+K   + + +  K      + T++ +  +++  K ++        +++  +L
Sbjct: 133 VKKNSPTSIKTKKTTLHAIFKQAIYESLITKNPVEFSIKLSKSRAKKEIIPFTKQEISSL 192

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK- 196
           +     + S  T +       I+ L+   G+R  E L L   +I   ++T+ I+      
Sbjct: 193 LAASKDNNSLYTLYP------IIRLVIETGMRRGEVLGLHWDDIDYTKNTITIKRSVSSF 246

Query: 197 -IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            +       S R  I+    L            +F       L+P +  +  + L   LG
Sbjct: 247 GVTSTKTTSSYRTLIVSKDTLEMLKKYKKHDTKVFVNAIYSYLSPNLLSKKFKILCDELG 306

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDW 309
           + ++   H LRH+ AT L++ G D+ ++   LGH  +STT   YT+   +     
Sbjct: 307 I-VNQHFHNLRHTNATWLINQGVDIATVSRRLGHSNISTTLNTYTHFIPEADKKA 360


>gi|294617321|ref|ZP_06696961.1| transposase B [Enterococcus faecium E1679]
 gi|291596430|gb|EFF27683.1| transposase B [Enterococcus faecium E1679]
          Length = 630

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/286 (20%), Positives = 107/286 (37%), Gaps = 24/286 (8%)

Query: 38  SYECDTRQ-FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           SY  D  Q    F  F   +   +Q + QL+  EI A++S+     I   ++   +S ++
Sbjct: 236 SYVSDIAQRLKEFFNFLDMKFKQVQRVHQLTRVEIEAYLSELNMMGIKPSTITGRISILE 295

Query: 97  SFLKYLKKRKITTESNILNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
                L + +     + + + +    K   + PR ++E   L  +++ L           
Sbjct: 296 GLFSTLLRLEWDDVPSKILIYSEDYPKIPRAKPRFIDE-FVLEQLNSHLDKLPE------ 348

Query: 154 ARNSAILYLLYGCGLRISEALSLT----PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              + +  ++  CG+RISE  +L      ++   D      Q K  K  IVP+   V  A
Sbjct: 349 -YIATMTMIVQECGMRISELCTLKKGCLLEDKDGDFFLKYYQWKMKKEHIVPISKEV--A 405

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST------TAH 263
           +L                 LF    G PL    F+  + +L     +   +       AH
Sbjct: 406 LLIKVREDKVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKSGEIYRFHAH 465

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             RH+  T +++NG     +Q  LGH     T  Y ++  +   + 
Sbjct: 466 AFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFDETLKNE 511


>gi|309776162|ref|ZP_07671153.1| integrase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916113|gb|EFP61862.1| integrase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 286

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 60/300 (20%), Positives = 123/300 (41%), Gaps = 30/300 (10%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +K+   +   L  E   SK T++ Y  D  QF  ++          +  + ++  ++ A+
Sbjct: 8   MKKIGEFKIYLYGEER-SKATIEKYMRDVMQFYKYM---------PENDKAITKEKLVAY 57

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
            +   ++K    S+   L  +   L YLK   +  + + +      +     R L + + 
Sbjct: 58  KNSL-SEKYKVSSINSMLVALNGLLDYLKLGNLKLKLHKIQRSVFYEEE---RELTKDEY 113

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D  L       K  D R   +L  + G G+R+SE   +T + + + ++ +R +GK 
Sbjct: 114 KRLLDTAL-------KRDDKRLYMLLQTICGTGIRVSEHKYITVEAVKEGKAVVRNKGK- 165

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
              R V +   ++K + +Y               +F    G+P++     + +++L +  
Sbjct: 166 --TRTVFIPKKLKKLLKDYCKQENI-----STGAVFITKNGRPMDRSNIWQAMKKLCQEA 218

Query: 255 GLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            +       H LRH FA        D+  +  +LGH  + TT+IYT +  K     + ++
Sbjct: 219 RVDDKKVFPHNLRHLFALTFYRLQKDVVRLADLLGHASIETTRIYTMITGKECQKSLSKM 278


>gi|283480272|emb|CAY76188.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 235

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 12/201 (5%)

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLVDNVLLHTSHETKWID 153
           ++ + ++L K+ +   +   ++   +    LPR  L+ +Q   +V+   L T        
Sbjct: 2   LQVWFRWLAKQNLILANPAADLELPRLEKHLPRTILSVEQVEDIVNLCDLXT-----LQG 56

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILE 212
            R+  +  LL+  G+R  E   L   +    +  L I QGKG + R++P+       +  
Sbjct: 57  MRDRTLPELLWSTGIRRGEVARLXTWSADFSRRILTIVQGKGKQDRVIPVGERALWWLRH 116

Query: 213 YYDLCPFDL-NLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           Y      ++  +     LF  + G   L        +    R  G+    + H  RH+ A
Sbjct: 117 YLHXVRPEIVAVAGCKALFVAMDGVAGLTANGITHAVVPYLRAAGIEKG-SCHLXRHAMA 175

Query: 271 THLLSNGGDLRSIQSILGHFR 291
           T +L NG DLR IQ++  H  
Sbjct: 176 TQMLENGADLRWIQAM--HAS 194


>gi|116255544|ref|YP_771377.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115260192|emb|CAK03296.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 410

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/281 (20%), Positives = 114/281 (40%), Gaps = 18/281 (6%)

Query: 29  RGLSKLTLQSYECDTRQFLI-FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           RG SK ++  +    R+FL    A +         + QL+++E+R +++     +  +  
Sbjct: 129 RGYSKHSISGHIWSARRFLQTIWAEHGG-------VSQLTHSEVRDYLANNLDGRKSNSL 181

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLPRALNEKQALTLVDNVLLHT 145
           +    S ++  L++L+   +T       + + +     +LP  ++  Q  ++++   L T
Sbjct: 182 VTWY-SHLRVLLRFLQASGLTELDLSAAVPSPRNLRFSALPAYMSVSQLNSVLEACDLST 240

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
                    R+ A+L LL   G+R SE   L+  +I      LR+ GKG ++  +PL   
Sbjct: 241 -----IPGRRDLAVLLLLSRLGMRASEVARLSLDDIDWRSGLLRVNGKGGRVATMPLPKD 295

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAH 263
           V  AI +Y          +      +                 +  +   +    S  AH
Sbjct: 296 VGAAISDYILHGRPTSGSHTIFHRVQTPCTPFTTATPVILIAGRALKRAKVTGTRSHHAH 355

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             RH+FAT  + +G  +  +  +L H    TT+IY   + +
Sbjct: 356 IFRHTFATIAIRSGVGMTELAQLLRHKDPDTTRIYAKFDIE 396


>gi|260885794|ref|ZP_05735780.2| integrase [Prevotella tannerae ATCC 51259]
 gi|260851599|gb|EEX71468.1| integrase [Prevotella tannerae ATCC 51259]
          Length = 489

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 114/289 (39%), Gaps = 24/289 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKR 90
           S  TLQ Y    R FL FL      +  I+ + +L+YT IR F    RT       +  +
Sbjct: 211 SAATLQKYNVCRRHFLEFLQN-GYRRADIK-LSELTYTVIREFDIYLRTAVGQNANTATK 268

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           ++   K+ +   +K  +      LN R   +  +    L +++ + + +        E  
Sbjct: 269 TMKTFKTIVILGQKMGVLHHDPFLNHRFHLEPVNR-GFLTDEEIMKIANKDFGIQRLEL- 326

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVR 207
               R+  I       GL   +  +LT  NI    D Q  +  + K      V LL   +
Sbjct: 327 ---VRDVFIFSCF--TGLAYIDVSNLTLDNIVTLDDKQWIMTKRQKTSVEANVLLLDIPK 381

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             I +Y      D           G     L+      Y++++    G+  + T H  RH
Sbjct: 382 SIIAKYSHKTYRD-----------GKLFPILSNQKTNSYLKEIADLCGIKKNLTFHLARH 430

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +FAT  LS G  + S+  +LGH  + TTQIY  + +K     M ++ D+
Sbjct: 431 TFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQLADK 479


>gi|300070957|gb|ADJ60357.1| site-specific tyrosine recombinase XerS [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 351

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/327 (18%), Positives = 131/327 (40%), Gaps = 46/327 (14%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYT------EEKITIQTIRQLSYTEIRAFISKRR----- 79
            S  T+ +Y  D + FL ++            +I +  +  L   ++  ++S RR     
Sbjct: 27  YSICTIDAYLNDFQIFLKWMINEKLTFGSEMREIKLDELNSLKKRDVENYLSYRRLGLMC 86

Query: 80  ----TQKIGDRSLKRSLSGIKSFLKYLKKRK-------ITTESNILNMRNLKKSNSLPRA 128
                ++    ++ R+ + ++S  KYL +            ++ +  ++  K  ++L   
Sbjct: 87  KEFSDKQTSQTTVIRNHAALRSLFKYLSEETENEYGDVYLEKNVMRKVKLKKVRDTLNYR 146

Query: 129 LNEKQALTLVDNVLLH-------------TSHETKWIDARNS----AILYLLYGCGLRIS 171
            ++ +   L++N                 TS   +W    N     AIL L    G+R S
Sbjct: 147 ASKLKGRLLLENDPHELLNFVEKKYESHTTSDVMRWKFLCNKKRDLAILALFLATGIRKS 206

Query: 172 EALSLTPQN-IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPL 229
           E +    ++ +++D+ T+ +  K  K  +V + P  ++ ++EY        +L   + PL
Sbjct: 207 ELIDTNVEDLVIEDKVTISVYRKEGKFDVVGVAPFAKRYLIEYLAQREKVGHLLEGKEPL 266

Query: 230 FR---GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           F      + K ++       + +        +  T+H LRHSFAT+L         + + 
Sbjct: 267 FVTKYSNQIKRISDASVDSVVTKY--TAAFNVRATSHDLRHSFATNLYRVSRSSGVVATQ 324

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           LGH    TT +Y ++  +   + + ++
Sbjct: 325 LGHNSTMTTDLYVHLVDEEIQEQLEKL 351


>gi|294776003|ref|ZP_06741499.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294450141|gb|EFG18645.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 429

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/298 (18%), Positives = 115/298 (38%), Gaps = 30/298 (10%)

Query: 31  LSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSL 88
            S +T+  Y+   ++    + ++Y +E IT     +L+   IRAF    +T+  +   ++
Sbjct: 147 YSPVTINRYKNVVKKLQRLIPSYYGKEDITFH---ELTPEFIRAFDIYLKTEGGLCRNTI 203

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R +   K F      ++   ++     + +++  + P  L   +  TL+         E
Sbjct: 204 VRYMKCFKKFTNMALAKEWMRKNPFYGYK-MEQDETDPVFLTYDELQTLMKKKFTIPRLE 262

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSL--------TPQNIMDDQSTLRIQGKGDKIRIV 200
                     I       GL  S+  +L           +    +  ++++ +     I 
Sbjct: 263 LV------RDIFVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRIKLEHRRKASSIS 316

Query: 201 PLLP-SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
            +    V  AILE Y   P  +     LP+    +           Y++++  + G+  +
Sbjct: 317 NIPLLPVPLAILEKYREHPVCIKKGCCLPVMCNQKM--------NSYLKEIADFCGIKKN 368

Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            T H  RH+F T + L+N   L+ +  +LGH     TQ Y  V + +  + M  + ++
Sbjct: 369 LTTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNNVKER 426


>gi|319400740|gb|EFV88962.1| transposition regulatory protein tnpA [Staphylococcus epidermidis
           FRI909]
          Length = 370

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 131/352 (37%), Gaps = 71/352 (20%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI---- 75
            +L+ L+  +  S  T ++Y    + F ++L     +KI  + +   ++ +   ++    
Sbjct: 29  RYLKYLDSVK-KSLNTKKTYAYALKNFFVYLES---KKICYKEVSFDNFVDFIRWMKTPF 84

Query: 76  -------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES----------------- 111
                    R+ + I  +++  +++ + +F  YL + K    +                 
Sbjct: 85  EYENVLSYHRKGKSISPKTINLTMTVVSNFYDYLYRSKKLDVNFYDFMHMESKYSKKYKS 144

Query: 112 ----------NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
                      + N+  +K+       L   +   L++          +  + R+  ++ 
Sbjct: 145 FMHHINKDYRTLKNILKVKEPKKKIEVLTNAEVKKLLE----------EANNIRDKFLIQ 194

Query: 162 LLYGCGLRISEALSLTPQNIMDD-QSTLRIQGKGDK----------IRIVPLLPSVRKAI 210
           LLY  GLRI E LSL   +I  D +   +I  K              R + +  S+    
Sbjct: 195 LLYETGLRIGEVLSLRIDDIKFDFRKGHQIVLKNRFNDNGTYLKTGERKIFISQSLIDLY 254

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            +Y      +L++     LF  I+G+     +N        ++L+    +  +   H  R
Sbjct: 255 DDYVYEIIDELSI-CSDYLFVKIKGRNVGEAMNYSDIYSLFKRLKHKTSI--NVHPHLFR 311

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQT 317
           H+ AT   +   D++ +Q  LGH  + TT  +Y +   ++  +   ++  Q 
Sbjct: 312 HTHATVFYNETKDIKQVQERLGHSNIQTTINLYVHPTEEDIREDWNKVKHQF 363


>gi|312134834|ref|YP_004002172.1| integrase family protein [Caldicellulosiruptor owensensis OL]
 gi|311774885|gb|ADQ04372.1| integrase family protein [Caldicellulosiruptor owensensis OL]
          Length = 400

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/328 (18%), Positives = 121/328 (36%), Gaps = 47/328 (14%)

Query: 18  RQNWLQ-NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
            ++WL   L       K TL+      + +L ++  +    I    +++L    ++   +
Sbjct: 74  LKDWLHTWLWE---YKKQTLR--PSTFKDYLCYIERHINPTIGHYKLKELRPEHLQTLYN 128

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK-KSNSLPRALNEKQAL 135
            +  + +   ++K+  + + S L    K  +   +        K K     R L+ ++  
Sbjct: 129 VKYQEGLSISTIKQIHTVLHSALDQALKNGLVNRNVSEATTLPKGKPKREIRILSLEEQQ 188

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---- 191
             +  +             R      +    GLRI E L+L  +++      + ++    
Sbjct: 189 RFIAALERE----------RLKTAFLVELASGLRIGELLALRWKDVNFKDGYIEVRRSLQ 238

Query: 192 --------------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--- 228
                                     RIVPL P + + + ++      +      L    
Sbjct: 239 RVRIFDGGNSKKTALAFQEPKTEAGKRIVPLPPVIIEELKQHRKKQLEEKLKAGALYEDN 298

Query: 229 --LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
             +F    G P++P  F+R   ++R   GL  S   H LRH++AT LL      + +Q +
Sbjct: 299 DLVFATELGTPIDPRNFERLFYRIREKAGLDKSVNFHALRHTYATRLLEANEHPKVVQEL 358

Query: 287 LGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           LGH  +STT  IY++V  +      M++
Sbjct: 359 LGHKDISTTLNIYSHVMPEIKKAAAMKL 386


>gi|301066463|ref|YP_003788486.1| site-specific recombinase XerD [Lactobacillus casei str. Zhang]
 gi|300438870|gb|ADK18636.1| Site-specific recombinase XerD [Lactobacillus casei str. Zhang]
          Length = 370

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/372 (17%), Positives = 147/372 (39%), Gaps = 48/372 (12%)

Query: 1   MEGNNLPEIVSFELLKERQNWL-QNLEIERGL--SKLTLQSYECDTRQFLIFL------A 51
           M   N  +++   +L    +++    + ++ +  +  TL  Y    ++FL +L       
Sbjct: 1   MSTQNYSKLI-HTMLPALPDYIQDYYQSQKAIPIADSTLYQYLHFYQEFLNWLINSGATT 59

Query: 52  FYTEEKITIQTIRQLSYTEIRAFISKR--------RTQKIGDRSLKRSLSGIKSFLKYLK 103
             + + + +  +  LS  + +AF++            +++  RS+   L GIK+  ++L 
Sbjct: 60  ASSPQTVPLTVLEHLSLRDAQAFMAYLLERPSKTHHNKRMTRRSVALRLVGIKALYRFLT 119

Query: 104 KR-------------------KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           +                    K+ T +   + RN K    L     + + L  +D     
Sbjct: 120 EESEPHADGEPYFYRNVWNKVKLKTHTETASYRNHKLQEMLFVDGEDAKFLQWLDQSYAQ 179

Query: 145 TSHETKWIDA-----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                          RN A++ LL+G G+R+SE +++  +++  D+ T+++  KG+    
Sbjct: 180 QLPAKPRRYFEATKVRNLAMIALLFGSGVRVSELVNMNLEDLNMDRHTVQVVRKGNFQDR 239

Query: 200 VPLLPSVRKAILEYYDLCPFDLNL-NIQLPLF---RGIRGKPLNPGVFQRYIRQLRRYLG 255
           V     +   +  Y       +       PLF    G +   +     + + ++     G
Sbjct: 240 VNFADWIDPYVQAYLTQRAAIIGYQKPTSPLFVTVVGQKINRIRQNTIEAFFKRYTTDYG 299

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
               +T H  RH+  T++ +   D++ +   LG    S T +Y N++ K+G + + E+ +
Sbjct: 300 --RRSTPHKARHTLGTNIYTVTKDVQQVADQLGQTTTSATDLYINLSDKSGKEALREVSE 357

Query: 316 QTHPSITQKDKK 327
               +  +  ++
Sbjct: 358 TAAKATDRGHEQ 369


>gi|229136719|ref|ZP_04265374.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST196]
 gi|228646739|gb|EEL02919.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST196]
          Length = 378

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 114/302 (37%), Gaps = 35/302 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
             ++L + SYE D    +  +  Y     + + I+ +    I+++ ++ + + + + ++ 
Sbjct: 76  RKAELKITSYEKD----MSLVRLYILPPFSYKKIKSIKPVMIQSYYAELKEKGLSNGTIS 131

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
                ++   K+  + +I  ++ +  ++  ++     +  + ++    +  +        
Sbjct: 132 NIHRCLRCIFKHAVEWEIIHDNIMNKVKKPREEQGEMKTWSSEECNRFLQYL-------- 183

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---------------KG 194
           K  + +      L    G+R  E L+LT ++I  D   + +                   
Sbjct: 184 KEKNIKYHMFFLLAIYTGMRRGELLALTWKDIDFDNKRILVNKSLVKTEKGLFKAATKTK 243

Query: 195 DKIRIVPLLPSVRKAILEYYDLC-----PFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIR 248
              R + +   V   +  YY         + ++LN +  +F G     PL+     R++ 
Sbjct: 244 SSNRSISISSFVIGKLQSYYSYKKKEFFRWGIHLNEEAYIFTGNTIHSPLHIDAPHRFLN 303

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGG 307
              +  G+P     H LRH+ AT +L  G   + +Q  LGH  +  T   Y+++      
Sbjct: 304 DHYKKAGVPR-IRIHDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQNMQQ 362

Query: 308 DW 309
             
Sbjct: 363 QA 364


>gi|133723146|gb|ABO37819.1| XerC [Lactococcus garvieae]
          Length = 353

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 121/326 (37%), Gaps = 48/326 (14%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  +  +F  +L             I + T+  L+ ++I  +I   R +   
Sbjct: 33  YSLTTLYQYLLEYERFFNWLIDSDVSKAKNIAGIDLDTLENLARSDIEGYILYLREKPRQ 92

Query: 82  ----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR---------- 127
                +   S+KR+L+ + S  KYL ++           RN+ K   + +          
Sbjct: 93  NNKSGLTQNSVKRTLAALSSLFKYLTEQAEGINGEPYFYRNVMKKVQIQKNRETLASRAE 152

Query: 128 --------------ALN--EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
                          L+  + +    + N  L + ++ K    R+ AI+ L+   G+R+S
Sbjct: 153 NIKGKLFLGDETQGFLDFIDNEYEKSLSNRALSSFNKNK---ERDLAIIALMLASGVRLS 209

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLF 230
           EA+++   ++      + +  KG K   V +       +L Y ++              F
Sbjct: 210 EAVNINISDLNMKTLVVEVTRKGGKRDAVNIAKFAELYLLNYLEIREQRYKPEKNNKAFF 269

Query: 231 RGIRG---KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
             I       ++    ++ + +  +     +  T H LRH+ AT L +       +   L
Sbjct: 270 LSIYRGQASRIDGSSIEKLVSKYSQA--FKVRITPHKLRHTLATRLYAQTNSQVLVSHQL 327

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH     T +YT++ S+   + + E+
Sbjct: 328 GHSSTQVTDLYTHIISQEQKNALDEL 353


>gi|163849327|ref|YP_001637371.1| integrase family protein [Chloroflexus aurantiacus J-10-fl]
 gi|222527321|ref|YP_002571792.1| integrase family protein [Chloroflexus sp. Y-400-fl]
 gi|163670616|gb|ABY36982.1| integrase family protein [Chloroflexus aurantiacus J-10-fl]
 gi|222451200|gb|ACM55466.1| integrase family protein [Chloroflexus sp. Y-400-fl]
          Length = 383

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 66/329 (20%), Positives = 115/329 (34%), Gaps = 42/329 (12%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL------------SYTEIRA 73
           E +R  ++ T+ SYE   R F+ +      E +    +  L              ++  A
Sbjct: 51  ERQRHHARPTIASYETALRIFVRWAERNGRECLGDLQVADLVAYARALRKRSYDLSQRAA 110

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-----A 128
             +  R +++ +R++   +  +  FL     +   +          + S  LPR     A
Sbjct: 111 AQADNRRERLSERTVHAYVRPLFGFLALADSQGAISFRVAAA--RPEVSRVLPRLPDPVA 168

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
                   LV         E +       RN+A+L+LL+  G RISEAL L   ++  D+
Sbjct: 169 PTPPDLRRLVRFYDKPQGEERERQMLTRLRNAALLHLLFSSGARISEALGLDVGDVARDR 228

Query: 186 STL---RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF-RGIRGKPLNPG 241
             L    ++GKG +   + +     +A+  Y     +          F     G  L+  
Sbjct: 229 RILPRVIVRGKGRREGTLFIRRHAEQALQRYLSARNWPPAREPLFIAFDPRTGGGRLSRI 288

Query: 242 VFQRYIRQLR-------------RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
              R +                     L    T HT RH    HLL+ G  L  +  IL 
Sbjct: 289 SGWRIVTGAANALADRLVWEGKADEAELLRQVTPHTFRHFVGYHLLNEGVSLAEVSQILR 348

Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           H  +  T+   +  +      + E++DQ 
Sbjct: 349 HRSVEVTR---SFYASYADVQLQEVHDQF 374


>gi|187928823|ref|YP_001899310.1| integrase family protein [Ralstonia pickettii 12J]
 gi|187725713|gb|ACD26878.1| integrase family protein [Ralstonia pickettii 12J]
          Length = 559

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 71/319 (22%), Positives = 125/319 (39%), Gaps = 42/319 (13%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           E +R LS LT +    D   +  FL      +  +   R  S  + R F     T  +  
Sbjct: 251 ERQRPLSSLTTE----DAVAYRAFLRRPMPRERWVGPPRPRSSPDWRPF-----TGALAA 301

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           RS+  +LS + +  ++L +++    +    ++      +   AL+  +A T  +  L+ T
Sbjct: 302 RSVAHALSILGAMFRWLVEQRYVLANPFAGIKVRGGGRT--AALDNSRAFTDGEWKLVRT 359

Query: 146 -SHETKWIDARNSA-------ILYLLYGCGLRISEALSLTPQNIMDD---QSTLRIQGKG 194
            +   +W     +A       +L   Y  GLR SE +  T  +I  D      L + GKG
Sbjct: 360 IADGLEWSYGWEAAAAQRLRFVLDFAYATGLRPSELVGATLGDIWTDAQGDEWLELTGKG 419

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR-----------GIRGKPLNPGVF 243
            +   V + P  R+A+  Y       ++  +  P  R           GI    L   V 
Sbjct: 420 GRSGNVAMPPLARRAVERYLTERGLPISRRLWRPEVRLVGDLGSEPEIGISSTRL-WHVV 478

Query: 244 QRYIRQLRRYLGLP--------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           +R+ +     +G             + H +RH+ ATH L +G +L  ++  L H  +STT
Sbjct: 479 KRFFKLAADVIGADHPAAADKLRRASPHWMRHTHATHALGSGAELTIVRDNLRHASVSTT 538

Query: 296 QIYTNVNSKNGGDWMMEIY 314
            IY + +       + E +
Sbjct: 539 SIYLHSDEVKRARQIGEAF 557


>gi|150004634|ref|YP_001299378.1| transposase [Bacteroides vulgatus ATCC 8482]
 gi|149933058|gb|ABR39756.1| transposase [Bacteroides vulgatus ATCC 8482]
          Length = 407

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 107/283 (37%), Gaps = 15/283 (5%)

Query: 32  SKLTLQSYECDTRQFLIF-LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +  T+Q YE   +    F    Y ++ I +  + +    +   ++  +  +K    +  +
Sbjct: 131 APATVQRYETSLKHTQDFVWETYHKKDILLGDVSRQFIEDYEFWL--KTEKKCCHNTATK 188

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L   K  ++    +          ++        P  L + +   L+   +     +  
Sbjct: 189 YLKNFKKIIRIALAKGWMKNDPFSEIK-FSLDKVEPDFLEDSEIQKLISKEI-----DIP 242

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
            +       ++  +  GL  S+   L  ++I++D +  +   KG +   +     + +  
Sbjct: 243 RLGQVRDVFVFCCF-TGLAFSDIHDLKKEHIVEDSNGAKWIRKGRQKTKIMCNIPLMEVP 301

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           L+       +     +  LF  +  + +N      Y+++L    G+  + T H  RH+FA
Sbjct: 302 LKILGKYSTNEYCKSRGVLFPVLCNQKMNA-----YLKELADICGIKKTLTTHVARHTFA 356

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           T  L+NG  + S+  +LGH  +  T+ Y  V  +     M ++
Sbjct: 357 TFALANGVSIESVAKMLGHTNVQMTRHYARVLDRTVIREMSQV 399


>gi|317010894|gb|ADU84641.1| XerCD family integrase/recombinase [Helicobacter pylori
           SouthAfrica7]
          Length = 355

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 64/267 (23%), Positives = 123/267 (46%), Gaps = 18/267 (6%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL--KKRKITTESNI 113
           +++++++++ +    +  F+S   T  +   + K     +     Y+  + +    +S I
Sbjct: 87  QRLSLKSLKNIDEVMLAEFLS-IYTGGLSLATKKNYRIALLGLFSYIDKQNQDENEKSYI 145

Query: 114 LNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
            N+  LK          N LP  LN ++    +++  +     +  + ARN  ++ ++  
Sbjct: 146 YNI-TLKNISGANQSAGNKLPTHLNSEELEKFLES--IDKIEMSAKVRARNRLLIKIIVF 202

Query: 166 CGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
            G+R +EAL L  ++   +    T+ I+GKGDK R V L     +++L+ + +      +
Sbjct: 203 TGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLIERELYPV 262

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRS 282
              L LF   +G  L      R + ++  + GL      AH LRHSFAT L     DL  
Sbjct: 263 KNDL-LFCNQKGMALTQAYLYRQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLIL 321

Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGDW 309
           +Q  LGH  L+T++IYT+ + +   + 
Sbjct: 322 VQEALGHASLNTSRIYTHFDKQRLEEA 348


>gi|228948202|ref|ZP_04110486.1| Integrase/recombinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228811560|gb|EEM57897.1| Integrase/recombinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 322

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 113/291 (38%), Gaps = 27/291 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GL   T+  YE     F+             + +++L+   I  ++S      + +++  
Sbjct: 47  GLRDRTISDYELHISHFMSV--------TGAEFLQELTVDHIYLWLSSM---NVSNQTKL 95

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             L  +K+FL           +   +++ +K  + +     +++   L+  + L     T
Sbjct: 96  TRLKCLKAFLGRCFDNGWIEINFWKSIK-IKVDSPVKEGATDREINLLLSILDL-----T 149

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG--KGDKIRIVPLLPSVR 207
           ++I+ R++A + L+Y  G+R+     L  +++  +   LRI G    +   I      V 
Sbjct: 150 RFIELRDAASVLLMYQTGIRVGTLSQLEHKHVNLENKVLRIDGGIIKNHESIHLPFDDVL 209

Query: 208 KAILEYYDLCPFDLNLNIQL---PLFRGIRGKPL----NPGVFQRYIRQLRRYLGLPLST 260
             +L         +    ++    LF    G  +          + + +  R  GL  + 
Sbjct: 210 ARVLGALMKQNDIIRKECRVNNNYLFITKNGGRIATSPTNNNITKRLSKHSRDYGL-KNI 268

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             H LR  FA +LL  G ++  I   LGH  L+ T  Y +++ +   + + 
Sbjct: 269 NPHALRRGFAKNLLKKGANIALISKALGHSDLAVTTRYLHLDKEEVAESLR 319


>gi|302064331|emb|CBK33708.2| transposase B [Staphylococcus aureus]
          Length = 630

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 61/286 (21%), Positives = 107/286 (37%), Gaps = 24/286 (8%)

Query: 38  SYECDTRQFL-IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           SY  D  Q L  F  F   +   +Q + QL+  EI A++S+     I   ++   +S ++
Sbjct: 236 SYVSDIAQKLKEFFNFLDIKFKHVQRVHQLTRVEIEAYLSELNMMGIKPSTITGRISILE 295

Query: 97  SFLKYLKKRKITTESNILNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
                L + +     + L +      K   + PR ++E   L  +++ L           
Sbjct: 296 GLFSTLHRLEWDDVPSKLLIYPEDYPKIPRAKPRFIDE-FVLEQLNSHLDKLPE------ 348

Query: 154 ARNSAILYLLYGCGLRISEALSLT----PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              + +  ++  CG+RISE  +L      ++   D      Q K  K  IVP+   V  A
Sbjct: 349 -YIATMTMIVQECGMRISELCTLKKGCLLEDKDGDYFLKYYQWKMKKEHIVPISKEV--A 405

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST------TAH 263
           +L                 LF    G PL    F+  + +L     +   +       AH
Sbjct: 406 LLIKVREDKVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKSGEIYRFHAH 465

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             RH+  T +++NG     +Q  LGH     T  Y ++  +   + 
Sbjct: 466 AFRHTVGTRMINNGVPQHIVQKFLGHESPEMTSRYAHIFDETLKNE 511


>gi|292656386|ref|YP_003536283.1| XerC/D-like integrase [Haloferax volcanii DS2]
 gi|291371835|gb|ADE04062.1| XerC/D-like integrase [Haloferax volcanii DS2]
          Length = 311

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 59/295 (20%), Positives = 110/295 (37%), Gaps = 37/295 (12%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G S+ TL SY    R+F         ++    +  ++    +  ++     + +   S K
Sbjct: 29  GRSERTLNSYSRILREFF-------HDQFPDLSPSEVEIRHVEDYLMALTDRGVSQNSKK 81

Query: 90  RSLSGIKSFLKYLKKR---KITTESNILNM--RNLKKSNSLPRALNEKQALTLVDNVLLH 144
           + L  + SF  Y  KR   +  T +    +     +     P     + A  L++ +   
Sbjct: 82  KYLEVLSSFYGYTLKRPQFEGITSNPAAVVMEEIPRVRPDRPDCATWENACKLINAI--- 138

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLL 203
                   D R+  +  +L   G R+ E LS+   ++  ++  +R++  KG K  +VP+ 
Sbjct: 139 -------PDPRDKTVTIILAKTGARLLEVLSIEEDDVDLEKGFIRLRERKGGKQTVVPID 191

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGL------ 256
                AI  Y       +N ++  P LF   +G  L+    +R ++      G+      
Sbjct: 192 DETIYAIKRYQF-----VNADLDSPYLFTSNKGGRLSKERIRREVKAAADRAGVAPKEER 246

Query: 257 --PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                 T HT R  F T +   G     ++ I G  +  T  IYT V+     + 
Sbjct: 247 RFEKKFTPHTFRTVFTTLMRKQGMKPYILKYIRGDAKTETMDIYTRVDRDEAKEE 301


>gi|295092359|emb|CBK78466.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 269

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/304 (16%), Positives = 112/304 (36%), Gaps = 39/304 (12%)

Query: 15  LKERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           + E++ + ++L   RG  LS+ T+ SY    +Q+                   ++  ++R
Sbjct: 1   MIEKEKFERHL---RGTSLSENTISSYMFAIKQYGEQY-------------DDVTQKKLR 44

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            +      +    +++   L  I  +L+ + K     +   + ++   +   L   ++E 
Sbjct: 45  EYKVWLI-ENYKPKTVNLRLRAINCYLECIGKENW--KQPFVRVQ---QKTFLENVISEA 98

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
                     L    E  W       ++  L   G R+SE + +  +++      L +  
Sbjct: 99  DYKYF--KSCLKNDDEMFW-----YFVIRFLAATGARVSELIQIKAEHVKL--GHLDLYS 149

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K+R + +   ++   L +      +        +F    G  +        +++L  
Sbjct: 150 KGGKLRRIYIPKELQSEALSWLAEKQQE-----SGFIFLNKYGDRITTRGISGQLKKLAT 204

Query: 253 YLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             G+  +    H+ RH FA   L    D+  +  ++GH  + TT+IY    +    + + 
Sbjct: 205 KYGINTAVVYPHSFRHRFAKSFLERCNDIAFLADLMGHESIETTRIYLRKTATEQREIVD 264

Query: 312 EIYD 315
            I D
Sbjct: 265 TIVD 268


>gi|41406204|ref|NP_959040.1| hypothetical protein MAP0106c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41394552|gb|AAS02423.1| hypothetical protein MAP_0106c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 343

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 54/324 (16%), Positives = 108/324 (33%), Gaps = 48/324 (14%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRS 87
           R  ++ T++       +F+ F   Y  E          +   +  + +           +
Sbjct: 17  RLCAENTVKVRASCVGEFIEFSGAYPWE---------WTARMMDEWSAHLVGSLSRAKST 67

Query: 88  LKRSLSGIKSFLKYL---------KKRKITTESNILNMRNLKKSNSL--------PRALN 130
           +++    ++ F  ++         +      +           S  L         R   
Sbjct: 68  IRQKQGAVRLFCSFITSPFYDWPAQCELWFGDHPTQICHEWNTSAHLVDYEGDPGRRPFT 127

Query: 131 EKQALTLVDNVLLH------TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
            K+    +D           +  +      R++ +  ++YG GLRISE   L   ++  +
Sbjct: 128 RKELQDFLDCADAQVEKARRSRRKGTLAAYRDTTMFKVMYGWGLRISELCRLDLADMYRN 187

Query: 185 Q--------STLRIQGKG-------DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
                      L ++           +  +  L+P   +A+L+Y +          +  L
Sbjct: 188 PHAPELGQCGFLHVRYGKASRGSPPKRRTVPTLMPWAAEALLDYVNNIRPLYEPGQKQAL 247

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           +   R   +           +R  +GL    T H  RHSF +H+  +G D R +Q I GH
Sbjct: 248 WLTERRSQVKVRTLTGTFDDIRDEVGLDRKLTPHCFRHSFISHMTEDGVDPRFLQEISGH 307

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEI 313
              STT IYT+V  +     + + 
Sbjct: 308 RFASTTGIYTHVTGEFMNKMLTDA 331


>gi|47565414|ref|ZP_00236456.1| putative integrase-recombinase [Bacillus cereus G9241]
 gi|208742323|ref|YP_002267775.1| integrase family protein [Bacillus cereus]
 gi|47557768|gb|EAL16094.1| putative integrase-recombinase [Bacillus cereus G9241]
          Length = 390

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 67/313 (21%), Positives = 120/313 (38%), Gaps = 34/313 (10%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE--------KITIQTIRQLSYTEIRAF 74
           ++++ ++   + T +SY  +   F   +  + EE        +     ++ L    IR +
Sbjct: 75  KDMDEKKNRKEDTKKSYVSEILLFCQCMVQHAEEFELNGEEVQQNDSLLKTLQPWHIRKY 134

Query: 75  ISKRRT-------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--NLKKSNSL 125
            +  +              +L R    I+SFLK+L       +     ++  N+ + +  
Sbjct: 135 NAWLKQVENGRNGDTYAVATLARKTVLIRSFLKHLHVFSYIEKPLHEELQRANVNEQDRP 194

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDD 184
            R L+  + + ++                 N  IL  L   G RI E  +   ++   D 
Sbjct: 195 NRDLSYDEVMKILGFYKEQG-------HLVNYTILLALASTGARIQELCTARVKDLHYDG 247

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGV 242
           +  L++ GKGDK R + +   + + I E      F   L+   + PLF   RG   NP  
Sbjct: 248 KYWLKVTGKGDKARELFIPEHLFQCISEMRRRRGFQTILDRGDECPLFVNQRGNFYNPKT 307

Query: 243 FQRYIRQLRRYLGLPL------STTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTT 295
               +  + +   L          TAHT RH+FA   +  G  DL  +   LGH  + TT
Sbjct: 308 LSNQVTDMIKKTNLDFLKYRENPVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTT 367

Query: 296 QIYTNVNSKNGGD 308
           +IY   + K   +
Sbjct: 368 KIYLEKHMKRKNN 380


>gi|332653262|ref|ZP_08419007.1| phage integrase [Ruminococcaceae bacterium D16]
 gi|332518408|gb|EGJ48011.1| phage integrase [Ruminococcaceae bacterium D16]
          Length = 410

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 67/328 (20%), Positives = 116/328 (35%), Gaps = 41/328 (12%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLI-FLAFYTEEKITIQTI 63
           NL E     L +    WL+       +   TL  Y     + L  +L      KIT + +
Sbjct: 87  NLNEGSRMPLSQWLDRWLEEYAAP-SVRPSTLDGYRRYIERNLKPYLGDKPVGKITREDV 145

Query: 64  RQLSYTEIRAFISKRRTQ---KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           ++L     R    +   +   K+   S++R    +   +    +  +   +    +   K
Sbjct: 146 QKLYRELQRNGRQEYHPEYGHKLSGSSIRRIHGVLHQAMDAAVRENLIARNPTEGITLPK 205

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K  +  + LN+ Q    +D +           D       Y     GLR  E   L   +
Sbjct: 206 KKTTPKQILNDAQLERFMDVI---------QKDEVWHEFFYTELTTGLRRGEICGLMWSD 256

Query: 181 IMDDQSTLRIQGKGDKI----------------RIVPLLPSVRKAILEYYDLCPFDLNLN 224
                 TL ++                      R + L PS  + + +           +
Sbjct: 257 FDAAHGTLTVRRTMHVQKGGGLAAGETKTGAGKRTITLPPSTVELLAQ-------RKKQS 309

Query: 225 IQLPLFRG--IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
               +F       +P+NP     ++++L +  GLP S   H LRH+FATH L++G D ++
Sbjct: 310 YSQWIFPNPLRPEQPVNPNAAYDHLKKLLQQAGLP-SIRFHDLRHTFATHALASGVDAKT 368

Query: 283 IQSILGHFRLS-TTQIYTNVNSKNGGDW 309
           +  ILGH + S T   YT+V        
Sbjct: 369 LSGILGHTQASFTLDTYTHVTGDMQKRA 396


>gi|303237761|ref|ZP_07324320.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302482047|gb|EFL45083.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 410

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 66/286 (23%), Positives = 110/286 (38%), Gaps = 24/286 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           SK +LQ Y    R F  FL + Y ++ I +         +   ++S          +  +
Sbjct: 129 SKDSLQKYSVLRRHFAEFLIYKYGKKDIGLAEFTPSVVQDFELYLST--AAGCAYNTSVK 186

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L  +K+   Y +KR        LN R   +  +    L +++ + + +  L     E  
Sbjct: 187 KLKALKTVTIYAQKRGYLLHDPFLNHRFHLEPVNR-GFLTDEEIMKIANKDLAIQRLEL- 244

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVR 207
               R+  I       GL   +  +LTP NI    D Q  +  + K +    V LL   +
Sbjct: 245 ---VRDVFIFSCF--TGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTNVETNVLLLDIPK 299

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             I +Y      D           G     L       Y++++    G+  + T H  RH
Sbjct: 300 SIIAKYSHKTYRD-----------GKLFPILTNQKTNAYLKEIADICGIKKNLTFHLARH 348

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +FAT  LS G  + S+  +LGH  + TTQIY  + +K     M ++
Sbjct: 349 TFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQL 394


>gi|38637722|ref|NP_942696.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527060|gb|AAP85810.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 327

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 57/281 (20%), Positives = 106/281 (37%), Gaps = 23/281 (8%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97
           Y    R    F  F ++E ++   + R +S    R + +KR  +     +  + +  ++ 
Sbjct: 32  YNAQARLLACFDRFLSDEALSACELPRSIS----RKWTAKRPHE--SKSTHDQRIGAVRQ 85

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI-DARN 156
           F  ++ +     +    ++   + S+  PR L   +   L       T      +     
Sbjct: 86  FALFMCRLGYAADVPDRSLTARRTSSFSPRILTHAEIQRLFRAADQLTPTALSPMRHLVM 145

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
             +L LLYGCGLR+ E L L   ++  ++  L ++    K R   L+P     +      
Sbjct: 146 PEVLRLLYGCGLRVGEVLHLRVADVDLERGILTVRD--GKFRKDRLVPPALPLVQRLRVY 203

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-----LSTTAHTLRHSFAT 271
                +       F      PL+        R+L    G+P          H LRH++A 
Sbjct: 204 AQVMGDRPSDAYFFPSPSDGPLSHSSIYWLYRELLLRSGIPHAGRGKGPRVHDLRHAYAV 263

Query: 272 HLL----SNGGD----LRSIQSILGHFRLSTTQIYTNVNSK 304
           H L     +G D    L  + + +GH  L+ TQ Y ++ ++
Sbjct: 264 HALLRWCQDGADLDAKLPVLATYMGHQSLAGTQRYLHLIAE 304


>gi|150005337|ref|YP_001300081.1| integrase protein [Bacteroides vulgatus ATCC 8482]
 gi|149933761|gb|ABR40459.1| integrase protein [Bacteroides vulgatus ATCC 8482]
          Length = 407

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 97/257 (37%), Gaps = 17/257 (6%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNL 119
             + L+YT +R F    R +     ++ + +  +++ +     +             + +
Sbjct: 145 DFKDLTYTFLRDFEQYLREKGNAVNTIAKHMRQLRTLVNEAINQGYMHADAYPFRKYK-I 203

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K+       L   +   L          E K +     A L+  Y  GLR S+   LTP+
Sbjct: 204 KQEKGRHEFLTPDELKKL-----ETVEVEEKSMRHVLDAFLFCCY-TGLRYSDFCQLTPE 257

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           N       +R+ GK   +    +   V   +  +       L +  + P    +   P N
Sbjct: 258 NF------IRVNGK-RWLYFKSVKTGVEIRLPLHLLFESRALGILDRYPDIGSLVSLPCN 310

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                + +R+L    G+    T H  RH+ AT L+  G  + ++Q +LGH  + TTQIY+
Sbjct: 311 SE-VNKQLRKLTGLCGIKKRITYHVSRHTCATLLVHQGVAITTVQKLLGHTSVKTTQIYS 369

Query: 300 NVNSKNGGDWMMEIYDQ 316
            V S      +  +  +
Sbjct: 370 EVLSSTIVRDLKNVQRK 386


>gi|288551749|gb|ADC53346.1| transposase B [Staphylococcus aureus]
 gi|288551789|gb|ADC53385.1| transposase B [Staphylococcus aureus]
 gi|329315329|gb|AEB89742.1| Transposase B [Staphylococcus aureus subsp. aureus T0131]
          Length = 630

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 60/286 (20%), Positives = 106/286 (37%), Gaps = 24/286 (8%)

Query: 38  SYECDTRQFL-IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           SY  D  Q L  F  F   +   +Q + QL+  EI A++S+     I   ++   +S ++
Sbjct: 236 SYVSDIAQKLKEFFNFLDIKFKHVQRVHQLTRVEIEAYLSELNMMGIKPSTITGRISILE 295

Query: 97  SFLKYLKKRKITTESNILNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
                L + +     + L +      K   + PR ++E   L  +++ L           
Sbjct: 296 GLFSTLHRLEWDDVPSKLLIYPEDYPKIPRAKPRFIDE-FVLEQLNSHLDKLPE------ 348

Query: 154 ARNSAILYLLYGCGLRISEALSLT----PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              + +  ++  CG+RISE  +L      ++   D      Q K  K  IVP+   V   
Sbjct: 349 -YIATMTMIVQECGMRISELCTLKKGCLLEDKDGDYFLKYYQWKMKKEHIVPISKEVV-- 405

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST------TAH 263
           +L                 LF    G PL    F+  + +L     +   +       AH
Sbjct: 406 LLIKVREDKVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKSGEIYRFHAH 465

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             RH+  T +++NG     +Q  LGH     T  Y ++  +   + 
Sbjct: 466 AFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFDETLKNE 511


>gi|304382578|ref|ZP_07365072.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
 gi|304336203|gb|EFM02445.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
          Length = 387

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 59/289 (20%), Positives = 105/289 (36%), Gaps = 25/289 (8%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R LSK T+++++   + F+ FL            + +    + R F+   R     + S+
Sbjct: 86  RTLSKATVKAFKDSHKSFVHFLQVRGRTDCMPTEVDKTLLEDYRLFM--LRDLGNKESSV 143

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
              L  +   ++   + +   E     +        +     E+ ALT  D   L     
Sbjct: 144 GNRLRHLHQVIRKALQERYVREDPFELID-------IETPTYERNALTADDVQKLLAYRP 196

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPS 205
            +  +     I  L    GL  S+   L   ++    D +  + +     + R +  L  
Sbjct: 197 HRSTENHCRLIFLLGCFTGLAFSDLKKLRMDDVYTLSDGRRYISLCRTKTQNRSIVPLLP 256

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS--TTAH 263
           + + IL        +     + P              F R I+++    GLP     T+H
Sbjct: 257 IAEEILAIVSHGRREGLFFREFPCNSN----------FNRTIQEISIKAGLPPHTQATSH 306

Query: 264 TLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           T RH+FAT   L NG  + ++  +LGH  +STT+IY  V        M 
Sbjct: 307 TARHTFATTICLENGLPIETVSKMLGHRFISTTEIYARVTKSKIAKEMQ 355


>gi|291539569|emb|CBL12680.1| Site-specific recombinase XerD [Roseburia intestinalis XB6B4]
          Length = 267

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 58/298 (19%), Positives = 120/298 (40%), Gaps = 40/298 (13%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +K+ + + + L+ +  LSK T Q Y  +  +F+ +L             ++++      +
Sbjct: 1   MKQFEGYEEYLK-QSELSKQTRQVYLREAEKFVRYLNG-----------KEITKDRTMLY 48

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEK 132
             K R + +   ++   +  +  +L+YL+  +        +++ LK  K  S+   ++ K
Sbjct: 49  REKLREEDLSPATINLYVIAVNRYLRYLECGQ-------ASIKTLKVQKKRSVENVISRK 101

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L++        +          I+  L   G+R+SE   +T +    +   +++  
Sbjct: 102 EYQELLNYAKSSGRKK-------YYYIMRTLALTGIRVSELQYITVE--TLETGRVQVYN 152

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG  IR V L   + + + ++               +FRG  G P+N     + I  L  
Sbjct: 153 KGK-IRDVYLPDVLIRELKKFCRE-----EKENDGIIFRGRGGDPINRITVYKMIAYLGD 206

Query: 253 YLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            +G+       H+ RH FA   +   G+L     +LGH  + TT+IYT    +     
Sbjct: 207 MVGIKKEKVHPHSFRHFFAISYMERYGNL---ADLLGHTSIETTRIYTTSTVEEKRRK 261


>gi|27468531|ref|NP_765168.1| transposition regulatory protein tnpA [Staphylococcus epidermidis
           ATCC 12228]
 gi|27316078|gb|AAO05212.1|AE016749_158 transposition regulatory protein tnpA [Staphylococcus epidermidis
           ATCC 12228]
          Length = 383

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 131/352 (37%), Gaps = 71/352 (20%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI---- 75
            +L+ L+  +  S  T ++Y    + F ++L     +KI  + +   ++ +   ++    
Sbjct: 42  RYLKYLDSVK-KSLNTKKTYAYALKNFFVYLES---KKICYKEVSFDNFVDFIRWMKTPF 97

Query: 76  -------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES----------------- 111
                    R+ + I  +++  +++ + +F  YL + K    +                 
Sbjct: 98  EYENVLSYHRKEKSISPKTINLTMTVVSNFYDYLYRSKKLDVNFYDFMHMESKYSKKYKS 157

Query: 112 ----------NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
                      + N+  +K+       L   +   L++          +  + R+  ++ 
Sbjct: 158 FMHHINKDYRTLKNILKVKEPKKKIEVLTNAEVKKLLE----------EANNIRDKFLIQ 207

Query: 162 LLYGCGLRISEALSLTPQNIMDD-QSTLRIQGKGDK----------IRIVPLLPSVRKAI 210
           LLY  GLRI E LSL   +I  D +   +I  K              R + +  S+    
Sbjct: 208 LLYETGLRIGEVLSLRIDDIKFDFRKGHQIVLKNRFNDNGTYLKTGERKIFISQSLIDLY 267

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            +Y      +L++     LF  I+G+     +N        ++L+    +  +   H  R
Sbjct: 268 DDYVYEIIDELSI-CSDYLFVKIKGRNVGEAMNYSDIYSLFKRLKHKTSI--NVHPHLFR 324

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQT 317
           H+ AT   +   D++ +Q  LGH  + TT  +Y +   ++  +   ++  Q 
Sbjct: 325 HTHATVFYNETKDIKQVQERLGHSNIQTTINLYVHPTEEDIREDWNKVKHQF 376


>gi|257899112|ref|ZP_05678765.1| phage integrase [Enterococcus faecium Com15]
 gi|257837024|gb|EEV62098.1| phage integrase [Enterococcus faecium Com15]
          Length = 379

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 57/327 (17%), Positives = 123/327 (37%), Gaps = 41/327 (12%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L    ++W+Q L  E  +S +T + YE        ++            I  L     + 
Sbjct: 62  LSDYFEDWMQ-LYKEGTVSPITYRKYEDTLMNIKKYMPAVL--------ISDLDRVGYQR 112

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP----RAL 129
           F++K     +   ++ +  + I++ LK   +  +           +K  +SL     + L
Sbjct: 113 FLNKYAKDHVK-STVIKFNNHIRASLKDAVEEGLIPFDPTRKAV-IKGKDSLKPKEDKYL 170

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  Q  +L+  V  + S +          ++ +    G+R +E L LT ++I  +   + 
Sbjct: 171 DYDQFKSLMKLVEENLSAQYSSPM-----LVLVAGATGMRFAELLGLTWEDIDFEDQIIT 225

Query: 190 IQGKGDKI-------------RIVPLLPSVRKAILEYYDLCPFDLN----LNIQLPLFRG 232
           I    +               R + +       + ++        +     N    +F  
Sbjct: 226 INKTWNYKLNEWGKTKNETSNRKISIDKHTIDLLKKFKINQKELFDNFEVKNPHNFVFFN 285

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           ++   ++     +Y+R+  + LG+    T H LRH+ A+ LL  G ++ S+   LGH  L
Sbjct: 286 LKNGLVSSNAVSKYLRKKLKELGIEKQFTLHGLRHTHASILLYQGVNILSVSKRLGHSSL 345

Query: 293 STTQ-IYTNVNSK---NGGDWMMEIYD 315
            TT   Y ++  +      + +  ++D
Sbjct: 346 ETTMSTYLHIVRELEDQDKEKINAVFD 372


>gi|269977663|ref|ZP_06184630.1| integrase [Mobiluncus mulieris 28-1]
 gi|269934266|gb|EEZ90833.1| integrase [Mobiluncus mulieris 28-1]
          Length = 368

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 58/311 (18%), Positives = 106/311 (34%), Gaps = 42/311 (13%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRAFISK 77
           Q++L++       +  T+  Y           A Y   KI  QT IR L+   I  +++ 
Sbjct: 75  QSYLEHAAS--YATPGTIARYRN-------MAASYIFPKIPPQTPIRALTRESIENYVTW 125

Query: 78  RRTQ------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-PRALN 130
            R +       +  R++KR ++ + +   Y  +      +    +R    +    P  L 
Sbjct: 126 LRAKPSRYGTSLKPRTIKRIVAFLSTLFNYQIEIGNLESNPARGIRIPNDAIPTQPVFLT 185

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            +Q   + DN                  ++  LY  GLR  EA +LTP ++     T+ +
Sbjct: 186 PQQVEKIADNC------------GYYGVLVRFLYATGLRFGEATALTPADVNVKTRTITV 233

Query: 191 -QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR----------GIRGKPLN 239
            +      +         K       +      + +  PL                +PL 
Sbjct: 234 SKAWKQGEKSSDFYLGAPKTDTSTRTVLVSKSVIALLKPLLVEDAPFLFHPKTRPDRPLR 293

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIY 298
              F+    +      +      H LRHS  + L+  G  L  IQ  +GH  + TT  +Y
Sbjct: 294 NKTFRNCAWKQAVE-NMDPRPRIHDLRHSHVSRLIQAGIPLPVIQKRVGHKDIQTTINVY 352

Query: 299 TNVNSKNGGDW 309
            ++  K+    
Sbjct: 353 GHITPKDARAA 363


>gi|160890282|ref|ZP_02071285.1| hypothetical protein BACUNI_02722 [Bacteroides uniformis ATCC 8492]
 gi|317481519|ref|ZP_07940580.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|156860014|gb|EDO53445.1| hypothetical protein BACUNI_02722 [Bacteroides uniformis ATCC 8492]
 gi|316902319|gb|EFV24212.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 388

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 103/253 (40%), Gaps = 19/253 (7%)

Query: 63  IRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            + L+   +  ++   + +    + + +R++S IK ++    ++    E+       +K+
Sbjct: 144 FQDLTPDYLTDYLIYMKKELGNTEITAQRNMSTIKIYVTAAYRKGYIEENPFQEFH-IKR 202

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
             S    L E++ +  V      T  E   +     A    +    + I++A     + +
Sbjct: 203 IKSDVDYLTEEELMQFVQLYYQRTLPEKLQLTL---AFFLFMCFTSMHITDARMFCIEQV 259

Query: 182 MDDQST---LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
            +D  T   ++ +    +   +P+     K + E+            +  LFR ++    
Sbjct: 260 NNDVLTYYRVKNRNCKPEPIKIPMPVPAEKLLEEW-------AEGREEGRLFRNVQCD-- 310

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              V  R ++ + + LG+    +A T RH+FAT  L    DL S+Q +LGH  +  T IY
Sbjct: 311 --QVVNRQLKAIAKELGINKKISAKTGRHTFATIYLRKTKDLSSLQKLLGHSNIRETMIY 368

Query: 299 TNVNSKNGGDWMM 311
            +V  ++  + M 
Sbjct: 369 AHVMDESKREGMQ 381


>gi|307701389|ref|ZP_07638409.1| site-specific recombinase, phage integrase family [Mobiluncus
           mulieris FB024-16]
 gi|307613404|gb|EFN92653.1| site-specific recombinase, phage integrase family [Mobiluncus
           mulieris FB024-16]
          Length = 368

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 59/313 (18%), Positives = 108/313 (34%), Gaps = 46/313 (14%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRAFISK 77
           Q++L++       +  T+  Y           A Y   KI  QT IR L+   I  +++ 
Sbjct: 75  QSYLEHAAS--YATPGTIARYRN-------MAASYIFPKIPPQTPIRALTRESIENYVTW 125

Query: 78  RRTQ------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-PRALN 130
            R +       +  R++KR ++ + +   Y  +      +    +R    +    P  L 
Sbjct: 126 LRAKPSRYGTSLKPRTIKRIVAFLSTLFNYQIEIGNLESNPARGIRIPNDAIPTQPVFLT 185

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            +Q   + DN                  ++  LY  GLR  EA +LTP ++     T+ +
Sbjct: 186 PQQVEKIADNC------------GYYGVLVRFLYATGLRFGEATALTPADVNVKTRTITV 233

Query: 191 QGKGDK-------------IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                +                      V K+++        +    +  P  +    +P
Sbjct: 234 SKAWKQGEKSSDFYLGSPKTDTSTRTVLVSKSVIALLKPLLVEDAPFLFHP--KTRPDRP 291

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
           L    F+    +      +      H LRHS  + L+  G  L  IQ  +GH  + TT  
Sbjct: 292 LRNKTFRNCAWKQAVE-NMDPRPRIHDLRHSHVSRLIQAGIPLPVIQKRVGHKDIQTTIN 350

Query: 297 IYTNVNSKNGGDW 309
           IY ++  K+    
Sbjct: 351 IYGHITPKDARAA 363


>gi|237729903|ref|ZP_04560384.1| phage integrase [Citrobacter sp. 30_2]
 gi|226908509|gb|EEH94427.1| phage integrase [Citrobacter sp. 30_2]
          Length = 284

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 53/284 (18%), Positives = 118/284 (41%), Gaps = 27/284 (9%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           +SY  D  +    +  Y   ++    + +++  +I  +I       +   +  R L+ +K
Sbjct: 19  KSYTSDLSK----VKNYILPRLGNAELHEINRRDIATYIHGL--DGLKPSTRNRHLALLK 72

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
           +   +  +      S    ++  ++  SL RA+  ++    +  +      E +      
Sbjct: 73  AVFSWAVEYNYLEVSPAAGIKAFREPASLRRAMEPEEFSVFIRVLKAEIKDENRDTLQ-- 130

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD 215
             +L LL   G+R+ EA S   +++   ++TL ++  K    R+VPL     + +     
Sbjct: 131 --LLGLLAFTGMRLGEARSACIEDLNLTRNTLFLRDTKSGDSRLVPLCGEAMEIV----- 183

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
            C   +    Q  LFR   G  +     +R ++++    G+ +  T H LR++  + +L+
Sbjct: 184 -CAQLMKHGNQGLLFRSAHGTKVAEP--RRLMKKICEKAGI-VPFTIHELRYTAGSAMLA 239

Query: 276 NGGDLRSIQSILGHFRLSTTQIYT-------NVNSKNGGDWMME 312
              DL +++  LGH  LST++ Y        + + +     M++
Sbjct: 240 ATRDLYAVKRFLGHKCLSTSERYANYFGGQQHADIEKAMSLMLK 283


>gi|261838090|gb|ACX97856.1| integrase/recombinase [Helicobacter pylori 51]
          Length = 355

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 64/286 (22%), Positives = 126/286 (44%), Gaps = 21/286 (7%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y     +F  +      +KI++++++ +    +  F+S   T  +   + K     +
Sbjct: 72  INTYALPLLKFHEYT-----KKISLKSLKSIDEVLLTEFLS-VYTGGLSLATKKNYRIAL 125

Query: 96  KSFLKYLKKRK-------ITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLLHTS 146
                Y+ K+              + N+  + +   N LP  LN ++    ++   +   
Sbjct: 126 LGLFSYIDKQNQDENEKSYIYNITLKNISGVNQSAGNKLPTHLNNEELEKFLEG--IDKI 183

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLP 204
             +  + ARN  ++ ++   G+R +EAL L  ++   +    T+ I+GKGDK R V L  
Sbjct: 184 EMSAKVRARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLKA 243

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AH 263
              +++L+ + +      +   L LF   +G  L      + + ++  + GL      AH
Sbjct: 244 FHIESLLKEWLMERELYPVKNDL-LFCNQKGSALTQAYLYKQVERIINFSGLRREKNGAH 302

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            LRHSFAT L     DL  +Q  LGH  L+T++IYT+ + +   + 
Sbjct: 303 MLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 348


>gi|239623223|ref|ZP_04666254.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522189|gb|EEQ62055.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 278

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/310 (16%), Positives = 115/310 (37%), Gaps = 38/310 (12%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P++     L   + +L    + R  S  T+  Y     QF                  QL
Sbjct: 5   PKLQPNHTLDLFEKYL----VARNKSPNTICVYRYAVEQFYHLYP-------------QL 47

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           +   ++ +      +    +++   +  +  F++Y +    T+ + I  ++ +++   L 
Sbjct: 48  TPRNLQLYKVYLL-EHYKPQTVNLRIRALNCFMEYRQ----TSITPITMIK-IQQKTYLD 101

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + +++     L            +  +     I+ L+   G+R+SE ++   ++I     
Sbjct: 102 KIISQADYEYL-------KRKLVENEEFTYYFIVRLITTTGVRVSELITFQIEDIDRGHK 154

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            +    KG+K+R + +   +     +++              LF    G PL+P   +  
Sbjct: 155 DIY--SKGNKMRRIYVPTQLGIEFKQWFQHI-----GRRSGHLFLNRFGSPLSPSGIRAQ 207

Query: 247 IRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +       L       H+ RH FA + +   GD+  +  +LGH  + TT+IY   +S  
Sbjct: 208 FKVFAARYHLDPEVMYPHSFRHRFAKNFIEKCGDITLLSDLLGHESIETTRIYLRRSSSE 267

Query: 306 GGDWMMEIYD 315
               + ++ D
Sbjct: 268 QYRIINKVVD 277


>gi|302064330|emb|CBL51506.1| transposase A [Staphylococcus aureus]
          Length = 361

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 131/362 (36%), Gaps = 71/362 (19%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           ++L++    +++ L+   G S  T+++Y    +    F+            +  +++  +
Sbjct: 23  YQLIEPVMKFIKYLDNT-GKSPNTIKAYCYHLKLLYEFMEQRG------VILNDINFELL 75

Query: 72  RAFISKRRTQKIGD-------------RSLKRSLSGIKSFLKYLKKRKITTESNI----- 113
             F+   R     +              ++   L+ + SFL YL +       ++     
Sbjct: 76  ADFVGWLRYPTANNVIDLQSKEAIREETTVNTILNAVMSFLDYLSRLGEFKSIDVFKQAK 135

Query: 114 -----------------LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
                             N+  L+      R L  ++   ++D               R+
Sbjct: 136 GRNFKGFLHHVNKGRYQKNVLKLRVKKKQIRTLTAEEVKQIIDAC----------HTKRD 185

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----------KGDKIRIVPLLPSV 206
             IL L+Y  GLRI E LSL  ++I    + + +            K  K R + +   +
Sbjct: 186 KLILMLMYEGGLRIGEVLSLRLEDIATWDNQIHLTPRDVNVNEAYIKLRKERTIHVSKEL 245

Query: 207 RKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
                +Y      +   +  +   L  G  GKPL        +R++ +  G+    T+H 
Sbjct: 246 MSLYTDYLVYEYSEELEHDYVFISLKEGYFGKPLKYQSVLDLVRRIVKRTGIEF--TSHM 303

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
           LRH+ AT L+  G D+  +Q  LGH  + TT   Y +++ ++    M   +++       
Sbjct: 304 LRHTHATQLIREGWDVAFVQKRLGHAHVQTTLNTYVHLSDQD----MKNEFNKYLERKEH 359

Query: 324 KD 325
           K 
Sbjct: 360 KK 361


>gi|182437392|ref|YP_001825111.1| putative phage integrase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178465908|dbj|BAG20428.1| putative phage integrase [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 423

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 67/356 (18%), Positives = 125/356 (35%), Gaps = 74/356 (20%)

Query: 1   MEGNNLPEIVSFELLKERQN-WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
           M    +P   S     +    WL  +  ER L   TL SYE  +R ++          + 
Sbjct: 56  MTRQGIPAASSTMAFGDYLTYWLATIAPER-LKPATLNSYEGLSRLYIR-------PALG 107

Query: 60  IQTIRQLSYTEIRAFISKRRT----------------------------QKIGDRSLKRS 91
            + + +LS  ++R F+++ +                             ++   R+++  
Sbjct: 108 KKRLNRLSPADVRRFLAEFKAACLCCLRGADEERPEDKRTCCAVGRCCKRRPSARTVQYI 167

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
            + ++S L+   + ++   +    +          R L+  +   L+     H       
Sbjct: 168 HAVLRSALQQAIREELIARNVARIVETPTVEPKEVRPLDAAEVRLLLKTARPH------- 220

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---------------GKGDK 196
              R  A+  LL   GLR  EAL LT  ++     TLR++                    
Sbjct: 221 ---RLYALWLLLVSTGLRRGEALGLTWADVDLTAGTLRVRRNVQRIRRELIFGTPKTMRS 277

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----------LFRGIRGKPLNPGVFQRY 246
           +R + L  S  +A+  +      +  +               +F  + G+  +P    R 
Sbjct: 278 VRTISLPKSCVQALTAHRTQQEREQKVAGAKWQQTPGQPAGLVFTTLTGRVTDPRSLNRM 337

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           +  L R   +      H LRH+ A+ LL+ G D R+I   LGH  ++ T   Y +V
Sbjct: 338 LTILCRDAKV-RRVRVHDLRHTCASLLLAQGVDARTIMETLGHSTITMTLDTYAHV 392


>gi|225377375|ref|ZP_03754596.1| hypothetical protein ROSEINA2194_03023 [Roseburia inulinivorans DSM
           16841]
 gi|225210776|gb|EEG93130.1| hypothetical protein ROSEINA2194_03023 [Roseburia inulinivorans DSM
           16841]
          Length = 404

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 63/308 (20%), Positives = 117/308 (37%), Gaps = 25/308 (8%)

Query: 10  VSFELLKERQN-WLQNLEIE--RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
            S +  +E  + + + L+ E  R  S+ T++       +F  +L       I I+  + +
Sbjct: 104 PSTDFSEELHDLFSEFLKAEEHRHFSESTMKQLRGRLMRFHDYLY-----DIGIRDFKSV 158

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNS 124
           + + I  +I      +     +  SL  I+  L +  +           + ++K  +   
Sbjct: 159 TGSIINTYILSLA--RYSTTYVSESLREIRRLLTFGYENGFIDTPLSDFIPHVKNIRQQK 216

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           +P    + +   ++++V       +  I  RN AI  +    G+R S+  +LT  NI  D
Sbjct: 217 IPSTFTDTEIEKILNSV-----DRSNPIGKRNYAIFLIAARLGIRSSDIRTLTFSNINWD 271

Query: 185 QSTL-RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
              +   Q K      +PL   V  AI++Y      + N+     +F             
Sbjct: 272 DKLISFCQQKTGHALSLPLPDDVGWAIIDYLKNGRPETNVKN---IFVSHMYPYGELHSL 328

Query: 244 QRYIRQLRRYLGLP----LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
              I +  R  G+       T  H  RH  AT +L N   L  I   LGH  +S+T++Y 
Sbjct: 329 GNVIPRQMRTAGINTPANKRTGMHAFRHGLATRMLENDVSLPVISQTLGHADISSTEVYL 388

Query: 300 NVNSKNGG 307
            ++ K   
Sbjct: 389 RISIKQLA 396


>gi|259649734|dbj|BAI41896.1| site-specific tyrosine recombinase [Lactobacillus rhamnosus GG]
          Length = 358

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 64/338 (18%), Positives = 134/338 (39%), Gaps = 44/338 (13%)

Query: 32  SKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ---- 81
           +  TL  Y    ++FL +L         + + + ++T+ +LS  + +AF++    +    
Sbjct: 22  ADSTLYQYLHFYQEFLHWLISSRVTDAVSPQNVPLKTLERLSLRDAQAFVAYLLERPSKT 81

Query: 82  ----KIGDRSLKRSLSGIKSFLKYLKKR-------------------KITTESNILNMRN 118
               ++  RS+   L GIK+  ++L +                    K+ T +     RN
Sbjct: 82  HPNKRMTRRSVALRLVGIKALYRFLTEESEPNADGEPYFYRNVWNKVKLKTHAETTTYRN 141

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID-----ARNSAILYLLYGCGLRISEA 173
            K    L     + + L  +D                    RN AI+ LL+G G+R+SE 
Sbjct: 142 HKLQEMLFVDGEDARFLQWLDRQYAQQLPSKPRAYFEATKERNLAIIALLFGSGVRVSEL 201

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFR- 231
           +++  +++  D+ T+++  KG+    V     +   +  Y         +     PLF  
Sbjct: 202 VNMNLEDLNMDRHTVQVVRKGNFQDRVNFADWIDPYLTAYLKSQTAMIGHQKPTSPLFVT 261

Query: 232 --GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
             G     +     + + ++     G    +T H  RH+  T++ +   D++ +   LG 
Sbjct: 262 QIGQTVNRIRQNTIEAFFKRYTTAYG--RPSTPHKARHTLGTNIYTVTKDVQQVADQLGQ 319

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
              S T +Y N++ K+G   + E+ +    ++ Q  ++
Sbjct: 320 TTTSATDLYINLSDKSGKAALREVSETAAKAVDQHPQQ 357


>gi|329312769|gb|AEB87182.1| Transposase B [Staphylococcus aureus subsp. aureus T0131]
          Length = 609

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 60/286 (20%), Positives = 106/286 (37%), Gaps = 24/286 (8%)

Query: 38  SYECDTRQFL-IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           SY  D  Q L  F  F   +   +Q + QL+  EI A++S+     I   ++   +S ++
Sbjct: 215 SYVSDIAQKLKEFFNFLDIKFKHVQRVHQLTRVEIEAYLSELNMMGIKPSTITGRISILE 274

Query: 97  SFLKYLKKRKITTESNILNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
                L + +     + L +      K   + PR ++E   L  +++ L           
Sbjct: 275 GLFSTLHRLEWDDVPSKLLIYPEDYPKIPRAKPRFIDE-FVLEQLNSHLDKLPE------ 327

Query: 154 ARNSAILYLLYGCGLRISEALSLT----PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              + +  ++  CG+RISE  +L      ++   D      Q K  K  IVP+   V   
Sbjct: 328 -YIATMTMIVQECGMRISELCTLKKGCLLEDKDGDYFLKYYQWKMKKEHIVPISKEVV-- 384

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST------TAH 263
           +L                 LF    G PL    F+  + +L     +   +       AH
Sbjct: 385 LLIKVREDKVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKSGEIYRFHAH 444

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             RH+  T +++NG     +Q  LGH     T  Y ++  +   + 
Sbjct: 445 AFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFDETLKNE 490


>gi|307293564|ref|ZP_07573408.1| integrase family protein [Sphingobium chlorophenolicum L-1]
 gi|306879715|gb|EFN10932.1| integrase family protein [Sphingobium chlorophenolicum L-1]
          Length = 378

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 49/308 (15%), Positives = 114/308 (37%), Gaps = 25/308 (8%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++    +  +++++ L+ E G    T++  E     +L          +  + + +++ +
Sbjct: 90  IAIPFKEAAESYIKRLKEEGG---KTIERKERTLELYLT-------PALGTKPLSKITSS 139

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++  + ++R      D ++ R ++ +                    +   K+ +     L
Sbjct: 140 DLAVYRAQRLKAGAKDATINREMAVVSHLYSKAVDWGWVAAKP--KIIRAKEGDGRIAYL 197

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              Q   ++       +            ++ L     +R+SE LS+ P+++  D+  + 
Sbjct: 198 TPDQCARII-----AAARNDLSPHIHPFCVIAL--STSMRMSEVLSIKPEHLDFDKRRIF 250

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           I       R  P+   +   +    +  P D        LF     K       ++  R+
Sbjct: 251 IPSAKAGQREQPMTKGLSDFLKAQLESLPDDAEW-----LFPNSASKSGRVMTIRKAHRR 305

Query: 250 LRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           + +  GL P     HT RH+  THL+  G DL ++Q + GH  L+    Y + N ++   
Sbjct: 306 VVKAAGLNPDEVLRHTFRHTAITHLVQAGVDLPTVQKVSGHKTLAMVARYAHANGEHIDA 365

Query: 309 WMMEIYDQ 316
            M  +  +
Sbjct: 366 AMDNLEQR 373


>gi|304439581|ref|ZP_07399486.1| phage integrase family site-specific recombinase [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304371960|gb|EFM25561.1| phage integrase family site-specific recombinase [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 309

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 74/306 (24%), Positives = 132/306 (43%), Gaps = 33/306 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N+L+   +E GLS  TL  Y  D   F +F      + +  +         +  F  ++R
Sbjct: 15  NFLKYKAME-GLSYNTLYGYSKD---FTVFNEVARGDNLEEK---------VLNFFLEKR 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-RNLKKSNSLPRALNEKQALTLV 138
             K G    ++ L+   ++  +L +R+I  E+ I+ +    KK ++ PR   ++    ++
Sbjct: 62  DLKGGYNGYRKRLN---TYFNFLIEREIIEENPIVKLGIKRKKEDAEPRPAEKESLKKIL 118

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGD 195
             + L++     + + R+   + L    G+R +EA+ +           LRI    GK +
Sbjct: 119 SLLDLNS-----YTEFRDYVFILLTLDTGIRPAEAVQVYENLFDYYNKDLRITPSIGKCN 173

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K RI+PL   V K +   +++     N      LF    GK L+    QR   +    L 
Sbjct: 174 KSRILPLSDGVIKYVKRLFEINKR--NNFKSNNLFLSDSGKELSTTAIQRKFARYCDILE 231

Query: 256 L--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           L      T + LRH FAT  L NGG++  +Q ++GH  +  T+ Y  +N     D +   
Sbjct: 232 LCGEDRITPYQLRHYFATTYLENGGNIVYLQYLMGHSDIKMTKKYLKINQ----DSVANE 287

Query: 314 YDQTHP 319
           + +  P
Sbjct: 288 HRRFSP 293


>gi|281423083|ref|ZP_06253996.1| integrase [Prevotella oris F0302]
 gi|281402796|gb|EFB33627.1| integrase [Prevotella oris F0302]
          Length = 409

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 60/287 (20%), Positives = 118/287 (41%), Gaps = 25/287 (8%)

Query: 32  SKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K T  +Y    R    F+   +  + +    + +    + ++F+     + +   + + 
Sbjct: 130 AKGTYLTYFYTRRTLAEFIQKKFHSKDLAFGQLTEQFIHDYQSFVVD--DKGLAIETCRH 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L+ IK   +   K     +    +    K+    P+AL+ +    + D  L+   H + 
Sbjct: 188 YLAIIKKVCRTAYKEGYADKCFFAHFSLPKQEEKTPKALSRESFEKIRD--LVIPEHRSS 245

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGDKIR-IVPLLPSV 206
              AR+  +       G   ++A+S+T  N+  D++    L+ + K +++R  V LLP  
Sbjct: 246 HTLARD--LFLFACYTGTAYADAVSVTRDNLFTDENGGLWLKYRRKKNELRACVKLLPEA 303

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              I +Y D        + +  LF  +    +     +R ++ L     +    T H  R
Sbjct: 304 LALIEKYRD--------DDRQTLFPMLHYPNM-----RRLMKCLAILADIKEDLTYHAGR 350

Query: 267 HSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           HSFA+ + L  G  + +I  +LGH  L TTQ+Y  V  K   + M +
Sbjct: 351 HSFASLITLEAGVPIETICKMLGHSNLQTTQVYAKVTPKKLFEDMDK 397


>gi|317481432|ref|ZP_07940499.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902417|gb|EFV24304.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 387

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 53/302 (17%), Positives = 112/302 (37%), Gaps = 33/302 (10%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT------- 80
           E GLS  +++S      +   +L +  +  +    ++++     + FI+  +T       
Sbjct: 106 ENGLSPASMRSKRNAQARVEEYLLYIGKPTL---ALKEVDKDFCKGFIAFLKTCTFNQGK 162

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL---PRALNEKQALTL 137
           + +   + +  ++ + + L       +   +    +   +K   L      L  ++   L
Sbjct: 163 KTLSSTTCRIFMNRLAAALNKAVSEGMLDRNPFKLLETKEKPQKLSAMREFLTIEELRQL 222

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGD 195
           +              D    A L+  +  GLR S+ ++L    I    D  TL I+ +  
Sbjct: 223 M--------ATPCRYDIVKKAFLFSCF-TGLRYSDMMTLKWSEIHTAADGKTLYIEHQQV 273

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K +    +P   +A+         D  +  QL          +     +  + +  +  G
Sbjct: 274 KTKNTVTIPLSNEALKWMPRKSKDDDRVFHQL---------RITSTTVEVVLGEWMQEAG 324

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T H  RH+ AT LL+ G DL ++  ILGH  +  T++Y  +  K   + M  + +
Sbjct: 325 IQKHITYHCSRHTAATLLLTLGADLYTVSKILGHRSIRMTEVYAKIVDKKKIETMNLVNN 384

Query: 316 QT 317
             
Sbjct: 385 MF 386


>gi|317471555|ref|ZP_07930902.1| phage integrase [Anaerostipes sp. 3_2_56FAA]
 gi|316900958|gb|EFV22925.1| phage integrase [Anaerostipes sp. 3_2_56FAA]
          Length = 323

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 93/244 (38%), Gaps = 23/244 (9%)

Query: 34  LTLQSYECDTRQFLIFL-------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ----- 81
            T  +Y  D R F  FL         YT        + ++   ++  ++   +T      
Sbjct: 43  RTRIAYAYDLRVFFHFLMDENPVYKNYTVIDFKPADLDRIESVDLEEYMEYLKTYVSDDK 102

Query: 82  --KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
             +  +R + R +S +++F  Y  KR++   +  L +   +        L   +  +L+D
Sbjct: 103 RMQNTERGIFRKMSSLRTFYAYYYKRQLIKTNPTLLVDMPRIHEKEIIRLEADEVASLLD 162

Query: 140 NVLLHTSHETKWIDAR-------NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
            +     + T             + AI+ LL G G+R+SE + L   ++    + L +  
Sbjct: 163 FIEKGGDNLTGQKRMYYEKTKERDLAIITLLLGTGIRVSELVGLDMNDVDFKNNGLHLIR 222

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           KG K   V     V  A+L+Y +     +      +  LF  ++ K +     Q  +++ 
Sbjct: 223 KGRKEMTVYFGDEVSDALLQYIEGSRSKIIPREGHENALFYSMQRKRIGVQAVQNLVKKY 282

Query: 251 RRYL 254
            R +
Sbjct: 283 ARQV 286


>gi|160890418|ref|ZP_02071421.1| hypothetical protein BACUNI_02860 [Bacteroides uniformis ATCC 8492]
 gi|156860150|gb|EDO53581.1| hypothetical protein BACUNI_02860 [Bacteroides uniformis ATCC 8492]
          Length = 409

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 115/289 (39%), Gaps = 25/289 (8%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSLKRSLS 93
           TL +Y    R    F+      K+      QL+   IR +       +     +L+  L+
Sbjct: 133 TLSTYLFTYRTLSEFIKAKF--KVPDLVFGQLNEQFIRDYQDFILLEKGYAVDTLRGYLA 190

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            +K   +   K   + + +  + +  K+  + P+AL+ +    L D  +     E +   
Sbjct: 191 ILKKICRIAYKEGHSEKYHFCHFKLPKQKETTPKALSRENFEKLRDLEI----PEKRRSH 246

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRI---QGKGDKIRIVPLLPSVRKA 209
                +       G   ++A+S+T +N   DD+ +L +   + K D +  V LLP     
Sbjct: 247 VITRDLFLFACYTGTAYADAVSITRKNLFRDDEGSLWLKYQRKKTDYLGRVKLLPEAVAL 306

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           I +Y D        + +  LF      P +    +  ++ LR   GL      H  RHSF
Sbjct: 307 IEKYRD--------DTRETLFP-----PQDYHTLRANMKSLRLMAGLSQDLVYHMGRHSF 353

Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           A+ + L  G  + +I  +LGH  + TTQIY  V  K   + M    + T
Sbjct: 354 ASLVTLEEGVPIETICKMLGHSNIKTTQIYARVTPKKLFEDMDRFVEAT 402


>gi|332829727|gb|EGK02373.1| hypothetical protein HMPREF9455_01643 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 409

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 59/287 (20%), Positives = 112/287 (39%), Gaps = 25/287 (8%)

Query: 32  SKLTLQSYECDTRQF-LIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +  TL  Y    R         +  + I    + +L   E + F+     Q     +++ 
Sbjct: 130 APTTLSGYVYTHRSLGKFIKKKFKTKDIAFGQLNELFIREYQDFV--LLEQGYSMDTVRH 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L+ +K   K   K  I+ + +  + +  K+  + P+AL+ +    + D  L    +   
Sbjct: 188 YLAILKKMCKIAFKEGISEKLHFAHYKLPKQKEATPKALSRESFEKIRD--LEIAPNRHS 245

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKG-DKIRIVPLLPSV 206
            +  R+  +       G   ++ + +T +N+  D+     L+ + K  D    V LLP  
Sbjct: 246 HLLTRD--LFLFACYTGTSYADIVRITEENLFTDEENNLWLKYRRKKTDFQARVKLLPEA 303

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              + +Y            +  LF        +  V Q  +R LR    +    + H+ R
Sbjct: 304 ITLLEKY--------KDEDRETLFPIQ-----SAEVVQLNMRGLRVMADIKQPISYHSGR 350

Query: 267 HSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           HSFA+ + L  G  + +I  +LGH  + TTQ+Y  V  K   + M +
Sbjct: 351 HSFASLITLEEGVPIETISRMLGHSNIKTTQVYARVTPKKLFEDMDK 397


>gi|222097940|ref|YP_002531997.1| integrase/recombinase [Bacillus cereus Q1]
 gi|221241998|gb|ACM14708.1| integrase/recombinase [Bacillus cereus Q1]
          Length = 332

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/291 (17%), Positives = 106/291 (36%), Gaps = 27/291 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GL + T+  Y      F      +         I +L+   I  ++S      + +++  
Sbjct: 57  GLRERTINDYYIHVSHFAKITDTHY--------IEELNVNHIYEWLSSM---NVSNQTKL 105

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             L  +K+FL           +   N++ +K    +     +++      N+LL     T
Sbjct: 106 TRLKCLKAFLGRCHDNGWIDINFWRNVK-IKVDTPVKEGATDREI-----NILLSVLDLT 159

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG--KGDKIRIVPLLPSVR 207
           +++D R++  + L+Y  G+R+     L  +++  D   L + G    +   I      V 
Sbjct: 160 RFLDLRDATAILLMYQTGIRVGTLAQLEHKHVDLDAKVLNVDGGIIKNHESIYLPFDDVL 219

Query: 208 KAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPL----NPGVFQRYIRQLRRYLGLPLST 260
             ++         +          LF    G  +       +  + + +  +  GL  + 
Sbjct: 220 ARLISVLMKQNEIIRREYNVKNDYLFITKSGGSVLTSPTNNIISKRMTKHAKEYGL-KNI 278

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             H +R  FA +LL  G ++  I   LGH  +S T  Y +++     + + 
Sbjct: 279 NPHAIRRGFAKNLLKKGANVALISKALGHSDISVTTRYLHLDKNEVAESLR 329


>gi|302668605|ref|YP_003833053.1| tyrosine recombinase XerC4 [Butyrivibrio proteoclasticus B316]
 gi|302397569|gb|ADL36471.1| tyrosine recombinase XerC4 [Butyrivibrio proteoclasticus B316]
          Length = 379

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 61/335 (18%), Positives = 116/335 (34%), Gaps = 48/335 (14%)

Query: 12  FELLKERQNWLQN--LEIERGLSKLTLQSYECDTRQFLIFL-----AFYTEEKITIQTIR 64
            +LL E   +  +  L   +  S  T   Y  D   F  +L          + +T   + 
Sbjct: 23  HDLLAELPQYCSDYELYARKKNSIKTRVEYLTDITNFFRYLVSVNPMVKAPKDVTTDILE 82

Query: 65  QLSYTEIRAFISKRRTQK------------IGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
           +L+  +   ++      K              + S KR +  I+S   +L  R     + 
Sbjct: 83  KLNGFDWDQYMDWLSNYKFDKKDETEKIKTNTNASKKRKMMAIRSLYHFLYVRDYIACNP 142

Query: 113 ILN--MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK-------------------W 151
                +  +K       A+ E +   L    +     E +                   +
Sbjct: 143 TEKAELPTVKNKKRGDIAILEDEQCRLFLAEIDKKYDEAREYLETAPKDEQTKKDKLRPY 202

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-----KIRIVPLLPSV 206
           +  R+ AI+Y++ G GLR+SE  ++   NI    S + +  KGD         V L   V
Sbjct: 203 LALRDKAIVYMILGTGLRVSELCAINCANISYQLSYINVYRKGDGDSKETTDEVYLSDEV 262

Query: 207 RKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYL-GLPLSTTAH 263
              +L+Y ++    +  N +    LF     + + P   +  +++      G   +   H
Sbjct: 263 MGILLDYINIARDQIGANEENYDALFLSSLHRRMTPRAIELMVKEYADKALGTDNNVHPH 322

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           TLR +F T       D+ +  +++ H  +  T  Y
Sbjct: 323 TLRATFGTRYYRKWKDISATSTVMNHSGIEITAQY 357


>gi|238854984|ref|ZP_04645313.1| site-specific tyrosine recombinase XerS [Lactobacillus jensenii
           269-3]
 gi|260664470|ref|ZP_05865322.1| site-specific tyrosine recombinase XerS [Lactobacillus jensenii
           SJ-7A-US]
 gi|282933778|ref|ZP_06339131.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1]
 gi|313472133|ref|ZP_07812625.1| site-specific recombinase, phage integrase family [Lactobacillus
           jensenii 1153]
 gi|238832355|gb|EEQ24663.1| site-specific tyrosine recombinase XerS [Lactobacillus jensenii
           269-3]
 gi|239529502|gb|EEQ68503.1| site-specific recombinase, phage integrase family [Lactobacillus
           jensenii 1153]
 gi|260561535|gb|EEX27507.1| site-specific tyrosine recombinase XerS [Lactobacillus jensenii
           SJ-7A-US]
 gi|281302080|gb|EFA94329.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1]
          Length = 351

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 64/351 (18%), Positives = 138/351 (39%), Gaps = 38/351 (10%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT------ 54
           ME      ++  EL     ++++   +    S  T   Y  + R+F  +L   +      
Sbjct: 1   METKKYLTLIDQEL-NNLPSFIREYNLSTNHSLTTSYQYLTEIRRFFDWLRHQSLSPAQS 59

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKI------GDRSLKRSLSGIKSFLKY---LKKR 105
             +++I+ + +L+ +++  +I   R  K          ++ RS++ ++S  K+      +
Sbjct: 60  NAEVSIKDLARLTRSDMMIYIDFLRHSKNQQGRLNSPTTVNRSINALRSLFKFLTITADK 119

Query: 106 KITTESNILNMRNLKKSNSL---PRALN--------EKQALTLVDNVLLHTSHET----- 149
                + +L +++L    +L      L         + + L  + N      ++      
Sbjct: 120 PFFDHNIMLKIQSLNNLETLNYRAHVLESHMYTGNLKYEFLEFLTNKYASLCNKQALASF 179

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           K    R+ AI+ L+ G G+R+SE  S+   ++   ++TL +  KG +   +P+       
Sbjct: 180 KVNKERDIAIIALILGTGVRVSECASINLSDLNLKEATLDLTRKGGQKDSIPVASWTLPY 239

Query: 210 ILEYYDLCPFDLNLNIQLPLFR----GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           I  Y D+     +       F       +   + P   +R + +  +  G P   T H L
Sbjct: 240 IAAYADIRNKRYHAEKNDKAFFLTYYHKKTSRITPNGIERLVGKYSKAFGHP--LTPHKL 297

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           RH+ A+ L     D   +   LG    + T +YT+V+ K     + ++ + 
Sbjct: 298 RHTLASELYGVTKDQVLVAQQLGQKGTTATDLYTHVDQKEQRKALDQLANN 348


>gi|298384311|ref|ZP_06993871.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           1_1_14]
 gi|298262590|gb|EFI05454.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           1_1_14]
          Length = 285

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 107/287 (37%), Gaps = 34/287 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            L+K T+ SY    + FL                 +++   + A+      +    +++ 
Sbjct: 31  NLAKNTVTSYVWTVQYFLCHYG-------------EVNKKNLLAYKGYL-VENFKPQTVN 76

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             L GI  +L++ K+ K+        ++ +K        L  +  ++  D   L    +T
Sbjct: 77  LRLQGINKYLEFTKQEKL-------KVKFVKVQQK--NFL--ENVISDADYKFLKAQLKT 125

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              D     I++ +   G R+SE L +  +++      L +  KG KIR + +  ++R  
Sbjct: 126 DGYDEW-YFIVWFMAATGARVSELLHIKAEHVQI--GHLDLYSKGGKIRRLYIPKNLRTE 182

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHS 268
             ++               +F    G+ +        ++      G+       H+ RH 
Sbjct: 183 AAKWLKEIGL-----TSGYIFLNRFGQRITTRGIASQLKHFAEKYGMNKEVVYPHSFRHR 237

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           FA + L    DL  +  ++GH  + TT+IY    +      + ++ +
Sbjct: 238 FAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDKVVN 284


>gi|269939561|emb|CBI47922.1| transposase B 1 [Staphylococcus aureus subsp. aureus TW20]
 gi|269941141|emb|CBI49528.1| transposase B 2 [Staphylococcus aureus subsp. aureus TW20]
          Length = 630

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 61/286 (21%), Positives = 105/286 (36%), Gaps = 24/286 (8%)

Query: 38  SYECDTRQFL-IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           SY  D  Q L  F  F   +   +Q + QL+  EI A++S+     I   ++   +S ++
Sbjct: 236 SYVSDIAQKLKEFFNFLDIKFKHVQRVHQLTRVEIEAYLSELNMMGIKPSTITGRISILE 295

Query: 97  SFLKYLKKRKITTESNILNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
                L + +     + L +      K   + PR ++E   L  +++ L           
Sbjct: 296 GLFSTLHRLEWDDVPSKLLIYPEDYPKIPRAKPRFIDE-FVLEQLNSHLDKLPE------ 348

Query: 154 ARNSAILYLLYGCGLRISEALSLT----PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              + +  ++  CG+RISE  +L      ++   D      Q K  K  IVP+   V   
Sbjct: 349 -YIATMTMIVQECGMRISELCTLKKGCLLEDKDGDYFLKYYQWKMKKEHIVPISKEVV-- 405

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST------TAH 263
           +L                 LF    G PL    F+  + +L     +           AH
Sbjct: 406 LLIKVREDKVSEEFPDSEYLFPRKDGSPLKQKTFRGELNKLAYEQNIVDKLGEIYRFHAH 465

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             RHS  T +++NG     +Q  LGH     T  Y ++  +   + 
Sbjct: 466 AFRHSVGTRMINNGVPQHIVQKFLGHESPEMTSRYAHIFDETLKNE 511


>gi|237725748|ref|ZP_04556229.1| integrase [Bacteroides sp. D4]
 gi|229435556|gb|EEO45633.1| integrase [Bacteroides dorei 5_1_36/D4]
          Length = 409

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 58/277 (20%), Positives = 119/277 (42%), Gaps = 25/277 (9%)

Query: 50  LAFYTEEKITIQTIR--QLSYTEIRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLKKRK 106
           L  + + +  ++ +   QL+   I  + +     +     +++  L+ +K   +   K  
Sbjct: 144 LGEFIKHQYKVKDLAFGQLTEQFIHDYQTFAMENKGYAIDTVRHHLAILKKICRLAYKDG 203

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
                +  +    KK+ + PRAL+ +    + D  +   ++    I AR+  +       
Sbjct: 204 YADRIHFRHFTLPKKTETTPRALSRESFERIRDVEI--PAYRKSHILARD--MFLFGCYT 259

Query: 167 GLRISEALSLTPQNIMDDQS---TLRIQGKGDKIRIV-PLLPSVRKAILEYYDLCPFDLN 222
           G+  ++ +S+T +N+  D+     L+ + K +++R    LLP     I +Y+        
Sbjct: 260 GVCYADVVSITHENLYTDEDGALWLKYRRKKNELRASVKLLPEAVTLIEKYH-------- 311

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLR 281
              +  LF  +    L     +R+++ L    G+      H  RHSFA+ + L  G  + 
Sbjct: 312 SEDRDTLFPLLHWPNL-----RRHMKALATLAGIKDDLCYHQARHSFASLITLEAGVPIE 366

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           +I  +LGH  +STTQ+Y  V+ K   + M +  + TH
Sbjct: 367 TISRMLGHSDISTTQVYARVSPKKLFEDMDKFIEATH 403


>gi|125624180|ref|YP_001032663.1| site-specific tyrosine recombinase XerS [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124492988|emb|CAL97951.1| putative tyrosine recombinase [Lactococcus lactis subsp. cremoris
           MG1363]
          Length = 357

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 61/327 (18%), Positives = 131/327 (40%), Gaps = 46/327 (14%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYT------EEKITIQTIRQLSYTEIRAFISKRR----- 79
            S  T+ +Y  D + FL ++            +I +  +  L   ++  ++S RR     
Sbjct: 33  YSICTIDAYLNDFQIFLKWMINEKLTFGSEMREIKLDELNSLKKRDVENYLSYRRLGLMC 92

Query: 80  ----TQKIGDRSLKRSLSGIKSFLKYLKKRK-------ITTESNILNMRNLKKSNSLPRA 128
                ++    ++ R+ + ++S  KYL +            ++ +  ++  K  ++L   
Sbjct: 93  KEFSDKQTSQTTVIRNHAALRSLFKYLSEETENEYGDVYLEKNVMRKVKLKKVRDTLNYR 152

Query: 129 LNEKQALTLVDNVLLH-------------TSHETKWIDARNS----AILYLLYGCGLRIS 171
            ++ +   L++N                 TS   +W    N     AIL L    G+R S
Sbjct: 153 ASKLKGRLLLENDPHELLNFVEKKYESHTTSDVMRWKFLCNKKRDLAILALFLATGIRKS 212

Query: 172 EALSLTPQN-IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPL 229
           E +    ++ +++D+ T+ +  K  K  +V + P  ++ ++EY        +L   + PL
Sbjct: 213 ELIDTNVEDLVIEDKVTISVYRKEGKFDVVGVAPFAKRYLIEYLAQREKVGHLLEGKEPL 272

Query: 230 FR---GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           F      + K ++       + +        +  T+H LRHSFAT+L         + + 
Sbjct: 273 FVTKYSNQIKRISDASVDSVVTKYT--AAFNVRATSHDLRHSFATNLYRVSRSSGVVATQ 330

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           LGH    TT +Y ++  +   + + ++
Sbjct: 331 LGHNSTMTTDLYVHLVDEEIQEQLEKL 357


>gi|83815635|ref|YP_444738.1| Phage integrase family protein [Salinibacter ruber DSM 13855]
 gi|83757029|gb|ABC45142.1| Phage integrase family protein [Salinibacter ruber DSM 13855]
          Length = 467

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 58/319 (18%), Positives = 121/319 (37%), Gaps = 26/319 (8%)

Query: 13  ELLKERQNWLQNLEIE-RGLSKL----TLQSYECDTRQFLIFLAF-YTEEKITIQTIRQL 66
           E+    +++L     + +G  +     T +SY    R+F  F+   Y  +++    +   
Sbjct: 156 EVKSAPEDFLAFAREKVKGYKRRGQIGTFRSYRTTCRKFTAFIEETYGRDEVPFGALEAE 215

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
            + E R +  + R       ++ R L  +++ +++  K    +     ++  +    S  
Sbjct: 216 LFREFRTYCYEER--GNSTNTVGRELGIMRTLVRHAMKEGKLSAYPFEHI-TIDSEPSQK 272

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ- 185
             L  ++   + D  +     E           L+  Y  G+R S+  +L  Q+I + + 
Sbjct: 273 ELLTPEEVERIADLEI----DEESPAAEARRWFLFAYYAGGMRFSDVATLQWQHIREGRS 328

Query: 186 ---STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
                     K      VPL+P  ++ +  Y +    D    I   +  G   + L+   
Sbjct: 329 GRPRVCYKMKKTADTVGVPLIPEAKEILCRYEEGDGEDWVFPISEGIDPGN-EEALHRRK 387

Query: 243 FQR------YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            QR      ++++L    G+    T H  R++ A  L  N GD+  +   LGH  +  TQ
Sbjct: 388 CQRNSAANRHLKELAGQAGIEKRVTFHLSRNAAAWKLYQNVGDIYKVSKFLGHSNVEQTQ 447

Query: 297 IYTN--VNSKNGGDWMMEI 313
            Y +  V+     D++  +
Sbjct: 448 DYIDGFVDESRDEDFIAAM 466


>gi|257467272|ref|ZP_05631583.1| integrase/recombinase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315918401|ref|ZP_07914641.1| DNA integration/recombination/inversion protein [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313692276|gb|EFS29111.1| DNA integration/recombination/inversion protein [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 333

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 127/298 (42%), Gaps = 22/298 (7%)

Query: 32  SKLTLQSYECDTRQFLIFL----AFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDR 86
           S  TLQ Y    + FL F+      + +E+I +  ++ +   ++  +I+   + + +   
Sbjct: 33  SPKTLQDYLFYLKDFLSFVYDGDGSFQQEEI-LPLMKGIEKEDVEQYIAHLLQERNMKKT 91

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL--NEKQALTLVDNVLLH 144
           S+ + +S +KS  K  +  +   E+    ++  K + +L   L  +      +++   + 
Sbjct: 92  SVNKVISAMKSLYK--ELEQYQVENPFRYVKLFKTTRNLDNILKISSNDIKKIIEQFQVK 149

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVP 201
                   D RN  ILY LY  G+R  E L +  +++M+ + +  ++    K  + +  P
Sbjct: 150 NEK-----DYRNLMILYTLYYTGMRSDELLHMEFRHLMNREGSYFLKLEKTKSGREQYKP 204

Query: 202 LLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG--LP 257
           L P++ + + EY       + L        F        N  +  R +  L + LG  + 
Sbjct: 205 LHPALMEKLQEYKKEMKALYQLEEEDLQNHFVFCSHFDKNKALSYRALYDLIKSLGLSIE 264

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
              + H +RH+ AT L  NG DL  I+  LGH     T++Y N  S      + +I D
Sbjct: 265 KEMSPHNIRHAIATELSLNGADLVEIRDFLGHADTKVTEVYINAKSILEKRVLNKIPD 322


>gi|150390613|ref|YP_001320662.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
 gi|149950475|gb|ABR49003.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
          Length = 321

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 62/320 (19%), Positives = 135/320 (42%), Gaps = 24/320 (7%)

Query: 1   MEGNNLPEIVSFELLKE-RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
           M+   L +  S + ++E  + + +   + + LS+ TL  Y+     F  F     +    
Sbjct: 1   MKRMTLQKNNSTKTIQEGFKEFYRFCRV-KNLSEPTLTYYQETLDTFQNFYPLSNQ---- 55

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           I TI +    +   F+  +    + D S+   + G+++ L Y  + +         ++ +
Sbjct: 56  ISTINKTITDDYVLFL--KNNSNMNDISINTKIKGLRTILYYFMELEYMDN---FKIKLM 110

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
                +     + +       +      +  + + R+  I+  L G G R+   +++  +
Sbjct: 111 MAQKKIKETYTDAELKL---LLKKPNLKQCGFAEYRDWTIVNYLLGTGNRVDTIVNVRIK 167

Query: 180 NIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           +I  +   +++ + K  + +++PL   + K + EY        +   +  LF  + G  L
Sbjct: 168 DIDFESGYIKLDKTKNKRQQLIPLSNVLAKVLTEYLQYR----DGEKEDYLFVSVYGAKL 223

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           N       I++  +  G+ L T+ H  RH+FA   + NGGD+  +Q ILGH  L   + Y
Sbjct: 224 NGNSLGHSIKKYNQRRGV-LKTSVHLFRHTFAKKWILNGGDIFRLQKILGHSTLDIVREY 282

Query: 299 TNVNSKNGGDWMMEIYDQTH 318
            N+     G+ + + YD+ +
Sbjct: 283 VNM----FGEDLQKDYDKFN 298


>gi|239627043|ref|ZP_04670074.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517189|gb|EEQ57055.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 298

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 57/314 (18%), Positives = 120/314 (38%), Gaps = 36/314 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+  N   I++++ ++E   WL++ E     S+ T++ Y    +QF  F           
Sbjct: 1   MKRKN-ERIITYQKIEEYGQWLESCE----RSRETVKKYRHYLKQFKEFTGDGP------ 49

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
                ++   +  + +  R + +   ++   ++ +  F KY       ++   ++  +  
Sbjct: 50  -----VTKEVVLLWKADLRER-LTPVTINCVIAALNGFFKYCGWDGCESKFLKISKSSFY 103

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                 + L + +   LV     + +          + +L  +   G+R+SE   +T + 
Sbjct: 104 PER---KELTKDEYGRLVKTAFANGNERL-------ALVLETICVSGIRVSELSFITVEA 153

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I   Q+ +  +G   +IR V L   +   +  Y         +     +F    GK L+ 
Sbjct: 154 IRRGQAEIECKG---RIRTVLLTRQLCTILQSYASKKNISTGM-----IFVTKSGKALDR 205

Query: 241 GVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               R ++ L    G+       H LRH FA        +L  +  ILGH  ++TT+IYT
Sbjct: 206 SNIWREMKALGMEAGVKNEKIFPHNLRHLFARTYYEIEKNLSKLADILGHRDINTTRIYT 265

Query: 300 NVNSKNGGDWMMEI 313
             +       + ++
Sbjct: 266 KESGSQHRLQLEKM 279


>gi|154500010|ref|ZP_02038048.1| hypothetical protein BACCAP_03668 [Bacteroides capillosus ATCC
           29799]
 gi|150271608|gb|EDM98865.1| hypothetical protein BACCAP_03668 [Bacteroides capillosus ATCC
           29799]
          Length = 503

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 60/310 (19%), Positives = 115/310 (37%), Gaps = 43/310 (13%)

Query: 22  LQNLEIERGLSKLTL-QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           L+ LE+ +   +LT   SY    +     + ++ ++ +T+Q + +     I+ +      
Sbjct: 182 LEWLEMMKNSVELTTYSSYANSIKG--SIVPYFKDKMLTLQDLEK-HPKHIQDYYQFELG 238

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   ++    + I+  L+Y  +  +   +    +   +K   L    N+++   L   
Sbjct: 239 KGLTANTVIHRHANIRKCLQYAFQIGLIKSNPADRVERPRKDKYLATIYNQQELEILFKT 298

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK------- 193
           V                 IL   Y  GLR SE + L    I  ++ T+ I+         
Sbjct: 299 VKGDPIELG--------VILAAFY--GLRRSEVVGLKWDAIDFEKKTISIKHTVTQVNVD 348

Query: 194 -------------GDKIRIVPLLPSVRKAILEY-------YDLCPFDLNLNIQLPLFRGI 233
                            R +PL+P   + +            +C           ++   
Sbjct: 349 GKNITVQKDRTKTKSSYRTLPLVPPFEELLRRLKQEQLVNQKVCGAAYCKKYLDYIYVNA 408

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            G+ + P    ++   + +  GL      H LRHS A+ L +NG  LR IQ  LGH  + 
Sbjct: 409 MGELVKPNFITQHFEIVLKNHGL-KKIRFHDLRHSCASLLYANGVSLRDIQEWLGHSDIG 467

Query: 294 TTQ-IYTNVN 302
           TT  IYT+++
Sbjct: 468 TTSNIYTHLD 477


>gi|300726813|ref|ZP_07060243.1| integrase [Prevotella bryantii B14]
 gi|299775926|gb|EFI72506.1| integrase [Prevotella bryantii B14]
          Length = 431

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 110/287 (38%), Gaps = 17/287 (5%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           R    F+     + I+I TI +  + E R F+ KR    +   ++  +L  +   +    
Sbjct: 136 RNLREFVENKGVQDISIGTITEDLFEEYRFFLKKR---GLKASTINSNLCWLSRLMFRAV 192

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
            ++I   +   N +  K+   + R L +   + L+   +     E          +    
Sbjct: 193 SKRIIRCNPFENAKYEKEEKKI-RFLQKSDVMKLMAMRMNDKETELA------RLMFVFS 245

Query: 164 YGCGLRISEALSLTPQNIMD---DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
              GL IS+  +L  ++I      Q  +R + +  K+  +  L  + +AI+ +       
Sbjct: 246 CFTGLAISDMENLEYKHIQTAAVGQMYIRKERQKTKVEFIVPLHPIAEAIISHCQKEQER 305

Query: 221 LNLNIQLPLFRGIRGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
             +   +             +  V    +  + +  G+    + H  RH+F T  LS G 
Sbjct: 306 SEVQQTVKEKDDHLVFHRNCSRSVMDTKLSIVGKACGIRQRLSFHMARHTFGTMSLSAGI 365

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
            + SI  ++GH  +S+TQ+Y  V  K   + M  +  +   S  +KD
Sbjct: 366 PIESIAKMMGHASISSTQVYAQVTDKKISEDMDRLIAKQ--SAKEKD 410


>gi|282858446|ref|ZP_06267625.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282588762|gb|EFB93888.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 345

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 65/319 (20%), Positives = 132/319 (41%), Gaps = 31/319 (9%)

Query: 14  LLKERQNWL----QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLS 67
           LL+  + +L    + + I+R L    L++Y+      L  L  Y ++K  +  I   QL 
Sbjct: 49  LLESFEEYLTQTKERIGIDRALKTFKLRTYQ------LSLLREYVQKKHKVSDIPLSQLD 102

Query: 68  YTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
              I  F       +++   S+  ++S +++ ++   K+ +      L   + ++    P
Sbjct: 103 KAFIEGFEYYLTIDRRLKRSSISSTVSTLQTIVRMAVKKGVLNFYPFLGY-SYERPKGEP 161

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R++ +++   ++D   L    E   I      +       GL IS+  +L  +NI+ ++ 
Sbjct: 162 RSITKEELEHIID---LEIEWENYRIV---RDLFVFSCFTGLAISDVRNLREENIVTEEG 215

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            L I+G+  K +    +  +  A+                +P             +    
Sbjct: 216 KLCIKGRRIKTKTPYRVQVLPPALTIMNRYRGIRAGFVFDVP----------TTDIVLNG 265

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +  ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQ+Y  V+S+ 
Sbjct: 266 MHYIQRNIGMETPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSER 325

Query: 306 GGDWMMEIYDQTHPSITQK 324
               M  I  +   + T K
Sbjct: 326 IHRDMQAIQQRIQDTFTLK 344


>gi|134287751|ref|YP_001109917.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134132401|gb|ABO60136.1| phage integrase family protein [Burkholderia vietnamiensis G4]
          Length = 494

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 60/314 (19%), Positives = 114/314 (36%), Gaps = 40/314 (12%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT--- 80
            L    G S  TL++Y  + R+ + +   +      +  +  L+  ++ A+    R    
Sbjct: 168 YLRDRAGRSPHTLRAYLAELRRLVAWCEAHQ-----LGPLSDLTRHDLLAYRQSLRKAHR 222

Query: 81  -------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNE 131
                  +K+ + +  R+L+ + S  +Y  +    T +    +    +S +   P+ +  
Sbjct: 223 DTPGDAHRKVSEATQSRALAVVASLFRYWTETGYLTANPAAGLVRGGRSRASFAPQRMLP 282

Query: 132 KQALTLVDNVLLHTS--HETKWIDARNSAILYLLYGCGLRISEALSL------TPQNIMD 183
              L   D  +   S   +   + AR  AI  L    G+R+ E +               
Sbjct: 283 PALLAACDASVAEASSTDDDALVIARRRAIWTLYRYAGVRLVELVWFDEAQLPKLDADDS 342

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPG 241
            + TL + GKG K R +PL P     +  Y  L       +      L  G++G  L   
Sbjct: 343 GRWTLHVLGKGRKTRAIPLPPICVPILTTYRQLRGLPAQPSPYEHAALIHGLKGGSLQSS 402

Query: 242 VFQRYIRQLRRYLG------------LPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILG 288
                ++ +                    S + H LRH++A  L + +   L + Q++LG
Sbjct: 403 GLYDEVKAIFITAAERLEKADLAAAARLRSASPHWLRHAYARTLVVDHQVPLPAAQALLG 462

Query: 289 HFRLSTTQIYTNVN 302
           H  + TT  Y   +
Sbjct: 463 HASVQTTAGYAKTD 476


>gi|332882853|ref|ZP_08450462.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332679173|gb|EGJ52161.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 409

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 57/285 (20%), Positives = 116/285 (40%), Gaps = 25/285 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K ++ +Y    R    ++   +  E +    + +    E + ++   + + +   + + 
Sbjct: 130 AKTSMSTYVYTRRYLGEYIKKRFKTEDVAFGQLNEQVAWEFQEYV--LKDKGLAVDTARH 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L+ +K   +   K     +    N +  K++   PRAL+ +    + D  +     E +
Sbjct: 188 YLAILKKICRIAFKEGHAEKRYFANFKLPKENRKPPRALSREDFEKIRDVQI----PEER 243

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRI---QGKGDKIRIVPLLPSV 206
                   +       G+  ++A+S+T  N  MDD   L +   + K + +  V LLP  
Sbjct: 244 VTHNIARDLFLFACYTGVPYADAVSITRDNIYMDDDGALWLKYLRKKNEYLAHVKLLPEA 303

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              I +Y+         + +  LF  I    +     +R+++ LR   G+      H  R
Sbjct: 304 IGLIEKYH--------SDERKELFPMIHHPNM-----RRHMKGLRDLAGIKSDLVYHMGR 350

Query: 267 HSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           H+F + + L  G  + +I  +LGH  L+TTQ+Y  V  K   + M
Sbjct: 351 HTFGSLITLEAGVPIETISKMLGHTNLATTQLYARVTPKKLFEDM 395


>gi|329848271|ref|ZP_08263299.1| phage integrase family protein [Asticcacaulis biprosthecum C19]
 gi|328843334|gb|EGF92903.1| phage integrase family protein [Asticcacaulis biprosthecum C19]
          Length = 442

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 91/241 (37%), Gaps = 21/241 (8%)

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           +R+ S   +   +  K  +   +    +          R L++ +A   +D +    +  
Sbjct: 189 RRTRSVAAAMFAWGIKHGLVKRNPFTGIDLPAAPVKE-RFLSQAEAGAFLDALAGLEAEG 247

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------GKGDKIRIVPL 202
           +      ++  L LL   G R SE  +LT   +  D+  L +       G     R + L
Sbjct: 248 SVDRVYGDA--LRLLLLTGARKSEIANLTWSEVDFDRRCLVLPPERTKAGGKTGERRIML 305

Query: 203 LPSVRKAILEYYDLCPFDLNLN---IQLPL-FRGIRGKPLNPG---VFQRYIRQLRRYLG 255
           +P+  + +   Y      + ++   + LPL F   R      G     +R   +      
Sbjct: 306 MPAALEILSRRYKARSDYVGIDGKPLDLPLVFPSPRTLNTTGGPIVGLRRIFAKACLAAD 365

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +      H +RHSFA+  ++ G  L  +  +LGH    TT+ Y +++     D + E+ +
Sbjct: 366 I-KGVRLHDMRHSFASFAVAGGASLFLVSKLLGHSNSRTTERYAHLS----ADPLQEVVN 420

Query: 316 Q 316
            
Sbjct: 421 H 421


>gi|270339835|ref|ZP_06006154.2| integrase [Prevotella bergensis DSM 17361]
 gi|270333599|gb|EFA44385.1| integrase [Prevotella bergensis DSM 17361]
          Length = 470

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 108/278 (38%), Gaps = 17/278 (6%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
                +FL     Y  + I +Q        ++  + +K +  K+        L+ + S L
Sbjct: 195 RKHLSEFLRC--RYHVDDIPVQKADTALIKDLEEYFAKEKGFKLNTS--AGYLTMLASLL 250

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           K L KR I      +   +++     PR +  ++   +       T +E +  +  +  +
Sbjct: 251 KDLHKRHIIDSYPFIG-HSIRWDVGTPRYITREEVNKI----AALTDNELQGYEQMSRDM 305

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDL 216
                  GL  ++   LT ++I+ +     I+    K   +  +PLLP     I  Y  +
Sbjct: 306 FLFSCYTGLSYTDVYHLTAEHIIHESDMDWIRKPRVKTGNVCHIPLLPEASAIIERYRGI 365

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LS 275
                           I G          +++++ R  G+  + T H  RH+FA+ + LS
Sbjct: 366 HTRAFRHEPPKGYLLPIPGC----DTLNIHLKKIARLCGIQKTLTYHMARHTFASQMTLS 421

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G  + S+  +LGH ++ TTQ+Y   + +     + +I
Sbjct: 422 EGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKI 459


>gi|269939603|emb|CBI47969.1| transposase B from transposon Tn554 [Staphylococcus aureus subsp.
           aureus TW20]
          Length = 609

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 61/286 (21%), Positives = 105/286 (36%), Gaps = 24/286 (8%)

Query: 38  SYECDTRQFL-IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           SY  D  Q L  F  F   +   +Q + QL+  EI A++S+     I   ++   +S ++
Sbjct: 215 SYVSDIAQKLKEFFNFLDIKFKHVQRVHQLTRVEIEAYLSELNMMGIKPSTITGRISILE 274

Query: 97  SFLKYLKKRKITTESNILNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
                L + +     + L +      K   + PR ++E   L  +++ L           
Sbjct: 275 GLFSTLHRLEWDDVPSKLLIYPEDYPKIPRAKPRFIDE-FVLEQLNSHLDKLPE------ 327

Query: 154 ARNSAILYLLYGCGLRISEALSLT----PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              + +  ++  CG+RISE  +L      ++   D      Q K  K  IVP+   V   
Sbjct: 328 -YIATMTMIVQECGMRISELCTLKKGCLLEDKDGDYFLKYYQWKMKKEHIVPISKEVV-- 384

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST------TAH 263
           +L                 LF    G PL    F+  + +L     +           AH
Sbjct: 385 LLIKVREDKVSEEFPDSEYLFPRKDGSPLKQKTFRGELNKLAYEQNIVDKLGEIYRFHAH 444

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             RHS  T +++NG     +Q  LGH     T  Y ++  +   + 
Sbjct: 445 AFRHSVGTRMINNGVPQHIVQKFLGHESPEMTSRYAHIFDETLKNE 490


>gi|295841005|dbj|BAJ06880.1| integron integrase intI [uncultured bacterium]
          Length = 284

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 54/286 (18%), Positives = 107/286 (37%), Gaps = 61/286 (21%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           +  S  T +SY    ++F+ F       ++ I++ ++     I  F+S    +  +   +
Sbjct: 20  KHYSIHTERSYCDWIKRFIFFHRMKERGELFIESEKK-----IERFLSHLAIEGNVAPST 74

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALTLVDNVLLHT 145
             ++++ +    K     K+  ++  L +  ++  K  ++P  L+ ++   ++       
Sbjct: 75  QNQAMNALVFLYK-----KVLEQNLALKIDAVRSVKQKNIPVVLSREEVAAVI------- 122

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLP 204
                 +D     +  LLYG GLRI+EAL L  Q++      + ++ GKG + R+     
Sbjct: 123 ----GIMDGVPRLVAQLLYGSGLRITEALRLRVQDVDFSNKQIVVRSGKGGRDRVTTFPT 178

Query: 205 SVRKAIL------------------------------------EYYDLCPFDLNLNIQLP 228
           ++   +                                     E+     F        P
Sbjct: 179 TIEPLLKDHLNRVRNLHNQDLAAGYGSVYLPNALARKYPNAAVEWGWQYVFPSRGLSVDP 238

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                R   ++P    R I+   +  GL    +AHT RH+FATHLL
Sbjct: 239 RSGKKRRHHVDPSTVNRAIKTAVKRNGLAKKVSAHTFRHTFATHLL 284


>gi|323466429|gb|ADX70116.1| Phage integrase family site-specific recombinase [Lactobacillus
           helveticus H10]
          Length = 360

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 61/349 (17%), Positives = 122/349 (34%), Gaps = 42/349 (12%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF------YT 54
           ME      ++  EL     ++++   +    S  T   Y  + R+F  +L          
Sbjct: 1   MESTKYLSLIKTEL-DNMPDFVKQYNLGTNHSLTTTYQYLTEIRRFFDWLRQEGISSAQD 59

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKI------GDRSLKRSLSGIKSFLKY------- 101
            + I   T+  L   +I  +I      K          ++ RS++ ++S  K+       
Sbjct: 60  NQHILPDTLANLRRNDIMLYIDNLGHTKNKQGHLNSPTTINRSINALRSLFKFLTITADN 119

Query: 102 LKKRKITTESNILNMRNLKKSNSLPRALNEKQ----------------ALTLVDNVLLHT 145
              +     + +L + +L  + +L    +  +                A    +      
Sbjct: 120 NNGKSYFERNVMLKIESLNDTKTLNYRAHVLESHMYTGNLKFEFLKFIAHDYENKCNKQA 179

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
               K    R+ AI+ L+ G G+R+SE   +  Q++    + L +  KG +   VP+   
Sbjct: 180 KPGFKKNKERDMAIIALILGTGIRVSECAGVDMQDLNIKDAILDVTRKGGQKDSVPIAEW 239

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLSTT 261
               I +Y  +       + +   F   R       +     ++ + +     G P   T
Sbjct: 240 TLDYIKKYKKIRAERYMADPKQTAFFLTRWHNQTKRMTTNAIEKMVNKYSASFGHP--LT 297

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            H LRH+ A+ L +   D   +   LG    + T +YT+V+ K     +
Sbjct: 298 PHKLRHTLASELYAVTKDQVLVAQQLGQKGTTATDLYTHVDQKKQRAAL 346


>gi|312134835|ref|YP_004002173.1| integrase family protein [Caldicellulosiruptor owensensis OL]
 gi|311774886|gb|ADQ04373.1| integrase family protein [Caldicellulosiruptor owensensis OL]
          Length = 376

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 57/312 (18%), Positives = 107/312 (34%), Gaps = 41/312 (13%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           + L+  T +SY+   R    F        I + T++ L+   I  F +  + Q I + +L
Sbjct: 78  KKLTPKTQESYQKMLR----FYVLPYLNDIELATLKPLT---IAKFYNTLKEQGISNTTL 130

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
                 ++    +  K +  T++   N+   KK         E Q   L +         
Sbjct: 131 NYVHRLLREIYNFAVKWQYVTKNPFDNVETPKKDRK------EMQVWNLDEIRKAEEVFR 184

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----------------G 192
              I A     + L    G+R+ E   L   +I        ++                 
Sbjct: 185 DTPIFAH----VMLALYTGMRLGEVCGLKWDDIDFKNKVCAVRRVAEYINGEVVIKEKPK 240

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLC-----PFDLNLNIQLPLFRGIRGKPLN--PGVFQR 245
               +RIV L  ++ + + E           F  N +     F  +        P    +
Sbjct: 241 TDKSLRIVALTDNLVEILKEEKKRQLENKLKFGQNYDTTYDGFISVWEDGRFKVPDYVSK 300

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
              ++            H LRH+ AT LL  G +++ I   LGH ++S T  +Y++VN  
Sbjct: 301 KFSKILSKQNEIKKIRFHDLRHTHATLLLQAGVNMKVISDRLGHSQISITMDLYSHVNLD 360

Query: 305 NGGDWMMEIYDQ 316
              + + ++  +
Sbjct: 361 MQREAIEKLEQR 372


>gi|229101972|ref|ZP_04232686.1| Site-specific recombinase, phage integrase [Bacillus cereus
           Rock3-28]
 gi|228681555|gb|EEL35718.1| Site-specific recombinase, phage integrase [Bacillus cereus
           Rock3-28]
          Length = 384

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 59/313 (18%), Positives = 126/313 (40%), Gaps = 25/313 (7%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + ++ + ++++ L   +L         F    AF+  +      +  ++   I  ++
Sbjct: 56  RVFERFVDS-KVKQNLRPKSLN---QFLLMFNSIKAFHETQNAHTFYMTDITTNFISDWV 111

Query: 76  SKRRTQ-----------------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
              + +                  + D ++   +  +K+F+ +  +++I +++       
Sbjct: 112 YWLKNEYVRFDGHAYVPESAQTVGLADETISSRIKRLKTFINWCLRQEIISKNPFNKFEG 171

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            +K N+    L+  +   L+   +  +     +   R+  +L+LL     RI+EAL L+P
Sbjct: 172 FRKDNTQIDILSVDELNNLL--KMAKSYSNKSFKHFRDYVLLHLLIDGMFRITEALLLSP 229

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRK--AILEYYDLCPFDLNLNIQLPLFRGIRGK 236
            NI      + IQ    K R    +P   K   +L            ++   +F  + G+
Sbjct: 230 SNIDHTNRAVIIQSNNAKSRKSRTVPLSNKTYRLLIQLLEENEAFEDDVDDLIFLSLSGR 289

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L+     R +R+      +      H +RHS ATH LS+ GD+ S++ ILGH  L T  
Sbjct: 290 MLSKNNVLRDMRKYAIEAKIKKRFYLHLIRHSAATHYLSSSGDVESLRKILGHADLRTVL 349

Query: 297 IYTNVNSKNGGDW 309
           IY+++      + 
Sbjct: 350 IYSHLADTTVQEK 362


>gi|34540596|ref|NP_905075.1| integrase [Porphyromonas gingivalis W83]
 gi|34541125|ref|NP_905604.1| integrase [Porphyromonas gingivalis W83]
 gi|34396909|gb|AAQ65974.1| integrase [Porphyromonas gingivalis W83]
 gi|34397441|gb|AAQ66503.1| integrase [Porphyromonas gingivalis W83]
          Length = 409

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 63/287 (21%), Positives = 116/287 (40%), Gaps = 25/287 (8%)

Query: 32  SKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K T  +Y    R    F+   +  + I    + +    + + F+     + +   + + 
Sbjct: 130 AKGTYPAYFYTRRTLAEFIQKKFHSKDIAFGQLTEQFIHDYQFFVVD--DKGLTIETSRH 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L+ IK   +   K     +    +    K+    P+AL+ +    + D  L+   H + 
Sbjct: 188 YLAIIKKVCRKAYKEGYADKCFFAHFSLPKQEEKTPKALSRESFEKIRD--LVIPEHRSS 245

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRI---QGKGDKIRIVPLLPSV 206
            I AR+  +       G   ++A+S+T  N+  DD+ +L +   + K +    V LLP  
Sbjct: 246 HILARD--LFLFACYTGTSYADAVSVTRDNLFTDDEGSLWLKYRRKKNELQACVKLLPEA 303

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            + I +Y        N + +  LF  +    L     +R ++ L     +    T H  R
Sbjct: 304 LELIEKY--------NDDTRPTLFPMLYHPNL-----RRLMKCLAVLADIKEDLTYHAGR 350

Query: 267 HSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           HSFA+ + L  G  + +I  +LGH  L TTQ Y  V  K   + M +
Sbjct: 351 HSFASLITLEAGVPIETICKMLGHSNLQTTQRYAKVTPKKLFEDMDK 397


>gi|189463335|ref|ZP_03012120.1| hypothetical protein BACCOP_04052 [Bacteroides coprocola DSM 17136]
 gi|189429954|gb|EDU98938.1| hypothetical protein BACCOP_04052 [Bacteroides coprocola DSM 17136]
          Length = 267

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 106/287 (36%), Gaps = 34/287 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            L+K T+ SY    + FL                 +++   + A+      +    +++ 
Sbjct: 13  NLAKNTVTSYVWTVQYFLNHYG-------------EVNKKNLLAYKGYL-VENFKPQTVN 58

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             L GI  FL++ K+ K+        ++ +K        L  +  ++  D   L    + 
Sbjct: 59  LRLQGINKFLEFTKQEKL-------KVKFVKVQQK--NFL--ENVISDADYKFLKARLKA 107

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              +     I++ +   G R+SE L +  ++I      L +  KG KIR + +  ++R  
Sbjct: 108 DGYEEW-YFIVWFMAATGARVSELLHIKAEHI--KVGYLDLYSKGGKIRRLYIPKNLRTE 164

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHS 268
             ++               +F    G+ +        ++      G+       H+ RH 
Sbjct: 165 AEKWLKSQGL-----TSGYIFLNRFGQRITTRGIASQLKHFAEKYGMNKEVVYPHSFRHR 219

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           FA + L    DL  +  ++GH  + TT+IY    +      + ++ +
Sbjct: 220 FAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDKVVN 266


>gi|212691118|ref|ZP_03299246.1| hypothetical protein BACDOR_00608 [Bacteroides dorei DSM 17855]
 gi|212666350|gb|EEB26922.1| hypothetical protein BACDOR_00608 [Bacteroides dorei DSM 17855]
          Length = 409

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 60/292 (20%), Positives = 118/292 (40%), Gaps = 25/292 (8%)

Query: 32  SKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K T  +Y+   R    F+ A +  + +    + +    +   FI     +     + + 
Sbjct: 130 AKGTYPAYDYTCRTMREFIEAKFKTKDLAFGQLTEQFIHDYENFI--LDEKGHAVDTARH 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L+ +K   +   K   +      +    K++   P+AL+ +    + D  +    H T 
Sbjct: 188 YLAIVKKSCRKAYKEGHSERFMFQHYVLPKQTVKTPKALSRESFEKIRDVEI--APHRTT 245

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGDKIRIV-PLLPSV 206
              AR+  +       G+  S+A+++T +N+  D+     L+ + K +++R    LLP  
Sbjct: 246 HRLARD--LFLFACYTGVAYSDAVTITKENLHTDEDGKLWLKYRRKKNELRASVKLLPEA 303

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              I +Y+D     L   I  P               + +++ L    G+  +   H  R
Sbjct: 304 VDLIEKYHDDERNTLFPMIHYP-------------SLRNHMKALAVLAGIKENLCYHVGR 350

Query: 267 HSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           HSFA+ + L  G  + +I  +LGH  + TTQ+Y  V  K   + M  + + T
Sbjct: 351 HSFASLVTLEAGVPIETISKMLGHSNIQTTQVYARVTPKKLFEDMDRLIEAT 402


>gi|332885866|gb|EGK06112.1| hypothetical protein HMPREF9456_02376 [Dysgonomonas mossii DSM
           22836]
          Length = 409

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 67/308 (21%), Positives = 118/308 (38%), Gaps = 34/308 (11%)

Query: 18  RQNWLQNLEI--ER---GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR--QLSYTE 70
            Q + +++E   ER     S  TL ++    R    F+     EK     +   QLS   
Sbjct: 111 LQQFDKHIESVKERIGIDRSPRTLPNHLYTKRVVAEFIK----EKFNASDLAFGQLSEQF 166

Query: 71  IRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           IR F S     + +   +L+  L+ +K   K   K   + ++     +  K+  S P+ L
Sbjct: 167 IRDFQSFVLDDKGLALDTLRHYLAILKKVCKIAFKEGNSDKNYFAYYKLPKQKESTPKTL 226

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQS 186
           +      + D  +     E +        +       G    + +S+T  N     D   
Sbjct: 227 SRVDFEKIRDLEI----PERRRSHVITRDMFLFSCYTGTAYIDTVSVTKDNLSTDDDGAW 282

Query: 187 TLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            L+  +GK  ++  + LLP     I +Y      D N     P+        ++ G  +R
Sbjct: 283 WLKYKRGKNGQLARIKLLPEAIALIDKY-----RDDNRETLFPM--------IHNGTIKR 329

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            ++ +R    +      H  RHSFA+ + L  G  + ++  +LGH  + TTQIY  V  K
Sbjct: 330 NMQGIRILADVKGRLHYHMSRHSFASLITLEAGVPIETVSKMLGHSDIKTTQIYARVTPK 389

Query: 305 NGGDWMME 312
              + M +
Sbjct: 390 KLFEDMDK 397


>gi|14020982|dbj|BAB47606.1| transposase B of Transposon Tn554 [Staphylococcus aureus]
 gi|169403108|emb|CAP17709.1| transposase B of Tn554 [Staphylococcus pseudintermedius]
 gi|302749959|gb|ADL64136.1| transposition regulatory protein TnpB_1 [Staphylococcus aureus
           subsp. aureus str. JKD6008]
          Length = 630

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 61/286 (21%), Positives = 105/286 (36%), Gaps = 24/286 (8%)

Query: 38  SYECDTRQFL-IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           SY  D  Q L  F  F   +   +Q + QL+  EI A++S+     I   ++   +S ++
Sbjct: 236 SYVSDIAQKLKEFFNFLDIKFKHVQRVHQLTRVEIEAYLSELNMMGIKPSTITGRISILE 295

Query: 97  SFLKYLKKRKITTESNILNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
                L + +     + L +      K   + PR ++E   L  +++ L           
Sbjct: 296 GLFSTLHRLEWDDVPSKLLIYPEDYPKIPRAKPRFIDE-FVLEQLNSHLDKLPE------ 348

Query: 154 ARNSAILYLLYGCGLRISEALSLT----PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              + +  ++  CG+RISE  +L      ++   D      Q K  K  IVP+   V   
Sbjct: 349 -YIATMTMIVQECGMRISELCTLKKGCLLEDKDGDYFLKYYQWKMKKEHIVPISKEVV-- 405

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST------TAH 263
           +L                 LF    G PL    F+  + +L     +           AH
Sbjct: 406 LLIKVREDKVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKLGEIYRFHAH 465

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             RHS  T +++NG     +Q  LGH     T  Y ++  +   + 
Sbjct: 466 AFRHSVGTRMINNGVPQHIVQKFLGHESPEMTSRYAHIFDETLKNE 511


>gi|114762272|ref|ZP_01441730.1| putative integrase [Pelagibaca bermudensis HTCC2601]
 gi|114767357|ref|ZP_01446164.1| putative integrase [Pelagibaca bermudensis HTCC2601]
 gi|114767555|ref|ZP_01446308.1| putative integrase [Pelagibaca bermudensis HTCC2601]
 gi|114540384|gb|EAU43471.1| putative integrase [Roseovarius sp. HTCC2601]
 gi|114540561|gb|EAU43636.1| putative integrase [Roseovarius sp. HTCC2601]
 gi|114544890|gb|EAU47894.1| putative integrase [Roseovarius sp. HTCC2601]
          Length = 409

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 67/313 (21%), Positives = 121/313 (38%), Gaps = 19/313 (6%)

Query: 8   EIVSFELLKER--QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           EI   ++L+     ++   +  ERGL+  T+ +   + R+FL +    +        +R 
Sbjct: 102 EIEPVKMLRHAICHDYETWMRDERGLADETIDARLREARRFLDWYFGRS----GADGLRS 157

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS--N 123
           L+  +I  ++   R   +   SL  S + ++S L+YL             +         
Sbjct: 158 LAVRDIDRYM-DMRAVGLRRISLAASAAWLRSLLRYLHLSGRVPTDLSPQVIGPMLYAYE 216

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            +P  L+  Q    +D VL  T+ +      R+ AIL +L   GLR  E  SL  ++I  
Sbjct: 217 DVPSILDRSQ----IDMVLKATARDRSPRGLRDHAILLMLAIYGLREGEICSLRLEDIDW 272

Query: 184 DQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
              +LRI+  K +    +PLL  V  A+L+Y  L    +       +F            
Sbjct: 273 HADSLRIRHTKTNACSYMPLLTPVGDAVLDYLRLGRPQVESRE---VFIRSLAPYTRMKN 329

Query: 243 FQRYIRQLRRYLGLPL--STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               +       G+        H  RH+ A  LL      + I  +LGH    +T  Y  
Sbjct: 330 LYGMVDGRLAAAGVVPVGKRGPHVFRHARAVELLRASVPQKIIGDVLGHRSTESTNAYLK 389

Query: 301 VNSKNGGDWMMEI 313
           + +++     +++
Sbjct: 390 LATEDLRAVALDV 402


>gi|24379471|ref|NP_721426.1| putative transposon integrase; Tn916 ORF3-like [Streptococcus
           mutans UA159]
 gi|24377408|gb|AAN58732.1|AE014942_8 putative transposon integrase; Tn916 ORF3-like [Streptococcus
           mutans UA159]
          Length = 388

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 48/282 (17%), Positives = 103/282 (36%), Gaps = 34/282 (12%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +     +++  ++I  +  ++ + +  +         ++      +++      +     
Sbjct: 110 MEILKNDRLGARSIDSIKPSDAKEWAIRMSENGFAYSTINNYKRSLRASFYIAIQDDYVR 169

Query: 110 ESNI-LNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     +  +   +++P+  L  +Q   L+D        ++  +  +N   + +L   G
Sbjct: 170 KNPFDFQLNTVIDDDTIPKTVLTSEQEARLLDF------AKSDTVYHKNYDEILILLKTG 223

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPL--LPSVRKA 209
           LRISE   LT  ++  +   + +                       R +P+       K 
Sbjct: 224 LRISELCGLTVSDLDFENHLISVDHQLLRNTELGYYIETPKTKSSERQIPMEATCQALKR 283

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTAH 263
            L   D             LF   +G P   G F R +R L +         LP   T H
Sbjct: 284 TLAKRDDRKCVEIDGYSHFLFLNRKGYPKTSGDFDRILRNLIKKYNKYHEEKLP-HITPH 342

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
           TLRH+F T+  + G + +++Q I+GH  ++ T   Y +   K
Sbjct: 343 TLRHTFCTNCANAGMNPKALQYIMGHANITMTLNYYAHATYK 384


>gi|323491144|ref|ZP_08096332.1| phage integrase family protein [Vibrio brasiliensis LMG 20546]
 gi|323314609|gb|EGA67685.1| phage integrase family protein [Vibrio brasiliensis LMG 20546]
          Length = 345

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 95/243 (39%), Gaps = 23/243 (9%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            + +++  +++A +     ++    ++ R  + + +  +YL        +    +  L +
Sbjct: 96  AVGKVTRQKVKAELRGLL-KRCAPSTVNRYKAALGTLYRYLLHEYDIDHNPTKGIPLLTE 154

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG--CGLRISEALSLTPQ 179
           +N+  R L++++   L+      +          N   L +L     G R SE L+   +
Sbjct: 155 NNARTRYLSDEEIERLLSACRHSS---------WNQLFLLVLLAITTGARRSELLTCRWE 205

Query: 180 NIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           +I     T+ +   K  + R++ L       +++Y               LF       +
Sbjct: 206 SINLKTRTIHLSTTKNGEQRLLTLTHEAVTELMKYR---------RSSGYLFPCPELPAM 256

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
               F  + ++      +  S   H LRH+ A+ L  NG  L  I+ +LGH  ++ TQ Y
Sbjct: 257 YFKNFDYHWKEALTKAHIH-SFRFHDLRHTCASILAMNGASLLEIKQVLGHKTIAMTQRY 315

Query: 299 TNV 301
            ++
Sbjct: 316 AHL 318


>gi|307566491|ref|ZP_07628922.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307344802|gb|EFN90208.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 456

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 108/278 (38%), Gaps = 17/278 (6%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
                +FL     Y  + I +Q        ++  + +K +  K+        L+ + S L
Sbjct: 181 RKHLSEFLRC--RYHVDDIPVQKADTALIKDLEEYFAKEKGFKLNTS--AGYLTMLASLL 236

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           K L KR I      +   +++     PR +  ++   +       T +E +  +  +  +
Sbjct: 237 KDLHKRHIIDSYPFIG-HSIRWDVGTPRYITREEVNKI----AALTDNELQGYEQVSRDM 291

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDL 216
                  GL  ++   LT ++I+ +     I+    K   +  +PLLP     I  Y  +
Sbjct: 292 FLFSCYTGLSYTDVYHLTAEHIIHESDMDWIRKPRVKTGNVCHIPLLPEASAIIERYKGI 351

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LS 275
                           I G          +++++ R  G+  + T H  RH+FA+ + LS
Sbjct: 352 HTRAFRHEPPKGYLLPIPGC----DTLNIHLKKIARLCGIQKTLTYHMARHTFASQMTLS 407

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G  + S+  +LGH ++ TTQ+Y   + +     + +I
Sbjct: 408 EGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKI 445


>gi|255505350|ref|ZP_05345621.3| putative phage integrase/recombinase [Bryantella formatexigens DSM
           14469]
 gi|255268514|gb|EET61719.1| putative phage integrase/recombinase [Bryantella formatexigens DSM
           14469]
          Length = 306

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 61/310 (19%), Positives = 121/310 (39%), Gaps = 34/310 (10%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           + N +  +++ E L+  +        E+  S  T++ Y  D   F  +            
Sbjct: 23  KENEMEHVITEERLRMFEQ--SMRRDEK--SDATVRKYLHDLLAFREYTGGGCP------ 72

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
               ++   + A+      +     S+   L+ +  F K         +S  +  ++ ++
Sbjct: 73  ----VTKEVVIAYKQYLMGR-YAVASVNSMLAALNCFFKEYGWYDCVVKSLKVQRKSFRR 127

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           S+   R L  ++   L+       S   +  + R S I+  +   G+R+SE   +T + +
Sbjct: 128 SD---RELTREEYYRLI-------STAWEKGNVRLSLIMQTICSTGIRVSELEFITVEAL 177

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
              ++T+ ++GK    R+V L   + + + +Y            +  +F    GKPL+  
Sbjct: 178 RSRRATVSLKGK---TRVVLLPAELCRILRKYVKEHNI-----SEGCIFVSRSGKPLDRS 229

Query: 242 VFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                ++ L    G+ P     H LRH FA        D+  +  ILGH  + TT+IYT 
Sbjct: 230 NIFHDMKALCETAGVNPEKVFPHNLRHLFAITYYDVEKDISHLADILGHASIDTTRIYTM 289

Query: 301 VNSKNGGDWM 310
           VN +     +
Sbjct: 290 VNGEEQAKQI 299


>gi|186473706|ref|YP_001861048.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184196038|gb|ACC74002.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 419

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 112/299 (37%), Gaps = 15/299 (5%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E + +   L    G ++ T ++     R FL   +   +E +T     +L+ T+I  F +
Sbjct: 125 ELELFRHYLVDSCGYAQTTCRNRLWHIRNFLD--SVVGQEPVTA---DRLTSTDIENFTA 179

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           +   +     + +     + S+L++        ++  L     K +  +P  L       
Sbjct: 180 RCF-KGRCHATRRSYCVDLASYLRFRGLHG--DDTRALLAAIPKMAPPIPARLPIAMTDR 236

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195
            +D         TK I  R+ AI   L    LR  E   L   +      T+ +   KG 
Sbjct: 237 ELDLF-FAAFDLTKPIGMRDFAIARCLSDLALRRMEVARLQLGSFDWPNGTVTLTHNKGG 295

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           + R +PL      A++ Y      D +             KP++       +R      G
Sbjct: 296 RERKLPLPVQTAHALVRYLQHGRPDTSNRAVFVRQIAPYDKPISAVAINHLVRAAFVRAG 355

Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           L       H LR + AT L+  G  L+ +  +LGH  L+TT IYT V+     D + ++
Sbjct: 356 LGERFRGVHVLRRTAATRLIRGGASLKEVADVLGHRHLNTTTIYTGVD----LDRLRKV 410


>gi|303237002|ref|ZP_07323575.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302482811|gb|EFL45833.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 421

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 57/285 (20%), Positives = 103/285 (36%), Gaps = 25/285 (8%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           K T++++    + F +FL          +   +      R F+   R     + ++   L
Sbjct: 130 KATVRAFRDSRKNFALFLKKRGSGDCLPKEADKDLIEHYRLFM--LRDLGNKESTVSNRL 187

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +   ++   + +   E     +        +     E+ ALT  D   L +    + +
Sbjct: 188 RHLHQVIRKALQERYIREDPFEQID-------IETPTYERNALTSDDLHKLLSYRPHRSV 240

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           D     I  L    GL  S+   L   ++    D +  + +     + R +  L  + + 
Sbjct: 241 DNHCRLIFLLGCFTGLAFSDLKKLRMDDVYTLDDGRRYISLCRTKTQNRSIVPLLPIAEE 300

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS--TTAHTLRH 267
           IL        +  L  + P              F R IR +    GLP     T+HT RH
Sbjct: 301 ILTIVSDGQKEGLLFREFP----------TNSHFNRKIRDIIIKAGLPPHTEATSHTARH 350

Query: 268 SFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +FAT   L NG  + ++  +LGH  +STT++Y  V+       M 
Sbjct: 351 TFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKSKIAREMQ 395


>gi|20092920|ref|NP_618995.1| site-specific recombinase [Methanosarcina acetivorans C2A]
 gi|19918230|gb|AAM07475.1| site-specific recombinase [Methanosarcina acetivorans C2A]
          Length = 298

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 58/306 (18%), Positives = 107/306 (34%), Gaps = 32/306 (10%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           RG S  T+  Y    R FL   +                Y +++ F+   R +K     +
Sbjct: 16  RGFSSRTVDYYVSCIRYFLELHSI------------DSDYDDLKRFLVHIRDEKKYSAST 63

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
                S + +F  YL       ++ + + R  K+     +   E ++  L+    +    
Sbjct: 64  CNGYFSSLNTFYDYLVFEGRIDKNLVPSFR--KRYMRTYKKFYESESRKLISVEDMALLV 121

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
           + +  +     I+  L   GLR +E ++L  +++  D  T+ ++    +           
Sbjct: 122 D-EPDELVYRTIILFLAKTGLRRNELITLDREDLDLDGLTVYLKPTAKRSNRTVFFDLET 180

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLG-------LPLS 259
           KA LE           + +  LF G++    +N  V    I +     G       L   
Sbjct: 181 KAFLE----AYLSERSDNEKALFVGLQNGCRINRNVIYNVITRSAEKNGLHVPGGHLDQK 236

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            T H  RH F T L  +G D+  I+ + G        IY ++      D +   Y +  P
Sbjct: 237 FTTHCTRHWFTTWLRRSGMDISFIKKLRGDSMNEAVDIYNHI----ELDELKADYLKCIP 292

Query: 320 SITQKD 325
            +  K 
Sbjct: 293 QLGVKP 298


>gi|95928516|ref|ZP_01311263.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
 gi|95135306|gb|EAT16958.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
          Length = 397

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 57/276 (20%), Positives = 101/276 (36%), Gaps = 19/276 (6%)

Query: 49  FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT 108
            L     +      +  +S  E+  F  +   +     +  R LS + S  K   +  + 
Sbjct: 131 MLDKRIIKTFGATPLADISKREVMLFHQQVCDET-SGTTGNRHLSLLSSIFKLALEYDLL 189

Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
            ++    ++  K++ S  R L E +    +  +          +D  ++  ++LL   G+
Sbjct: 190 EKNPCRGIKKAKENRSRDRFLQEDEYTRFIQVL-------QTKLDQPSACAIFLLIALGM 242

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
           R SE LSL  +++      L ++   +       L SV   +L          N     P
Sbjct: 243 RKSELLSLRWEDVSLADRHLHLRDTKNGESRYVALNSVSHGLLTKMKQKRKASNP-WVFP 301

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
                    L     +R    + R   +      H LR S A+HLL+ G D+  +  ILG
Sbjct: 302 SRTSSESGHL--QDVRRTFATVCRESKIT-GLRIHDLRRSHASHLLNAGVDISIVGKILG 358

Query: 289 HFRLSTTQIYTNV-------NSKNGGDWMMEIYDQT 317
           H  L +TQIY  V        S+     + E+ +Q 
Sbjct: 359 HKSLKSTQIYAKVATSSLARTSEIASRKIEEVMNQA 394


>gi|323126847|gb|ADX24144.1| putative transposon integrase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 414

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 60/324 (18%), Positives = 121/324 (37%), Gaps = 51/324 (15%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSL 88
           GL   T ++Y+           ++ ++ +    I+ L  ++IR+F +    ++ +   ++
Sbjct: 84  GLKDNTFKNYQY-------LYEYFVDDNLGNVLIKNLKKSDIRSFYNYLAEERNVKVNTI 136

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
               + +   L          ++   N ++ LK+S +  +    ++ALTL +  L     
Sbjct: 137 DNIHTVLHQVLDLAVDDDYILKNPSDNALKELKQSRTNGKK--SRKALTLAEQNLFEDFL 194

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK-------------- 193
            T         I   +   GLR+ E   L   +I  + +T+ +                 
Sbjct: 195 RTNNKYKGWYPIFITMLWTGLRVGEVTGLRWDDIDFNNNTISVNHTLVYYQTRTERGCDF 254

Query: 194 -------GDKIRIVPLLPSVRKAILEY------YDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                      R VPLLP V++A+          ++    +       +F    G   + 
Sbjct: 255 TVNTPKTKAGERTVPLLPKVKEALKMEKQRQTELEISCRVVINGFTNFIFLNRFGDLYHQ 314

Query: 241 GVFQRYIRQLRRYLG-------LPLSTTA-----HTLRHSFATHLLSNGGDLRSIQSILG 288
           G   + ++++ R          +    T      H+LRH+F T ++  G +L+++Q ILG
Sbjct: 315 GTLNKALKRIIRDCNFSVLDGKINSEVTLPNFSNHSLRHTFTTRMVEAGTNLKAMQDILG 374

Query: 289 HFRLSTTQ-IYTNVNSKNGGDWMM 311
           H  +STT  IY   +       M 
Sbjct: 375 HSDISTTMNIYAEASKDLKEIEME 398


>gi|150402804|ref|YP_001330098.1| phage integrase family protein [Methanococcus maripaludis C7]
 gi|150033834|gb|ABR65947.1| phage integrase family protein [Methanococcus maripaludis C7]
          Length = 291

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 98/247 (39%), Gaps = 15/247 (6%)

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN-LKKSNSLPRA 128
           E+   I     +     +    L+ +  F  +        ++ I   R  +K S      
Sbjct: 55  EVSDAIFYYNNKSCSKNTKLSYLTYLNVFFDFCVDNNYIAKNPISKYRKSMKPSKKERVY 114

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L EK    +           ++  D     +   L   GLR  E L+L   ++  D   +
Sbjct: 115 LTEKHQELVF----------SRLKDFEFRFMYVFLVQTGLRRGEFLNLKFIDVDLDDRII 164

Query: 189 RIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
            ++G KGDK R VP+   +   +  +       L   +    F   +GK  +  ++  + 
Sbjct: 165 HVKGGKGDKYRFVPISDELYMYLKRWNYER--ALRYPVDDSYFVSKKGKRQSNKIYASFS 222

Query: 248 RQLRRYL-GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
             + R +  L +  T H LRH+FAT+ ++   DL+++  ILGH  ++TT IY + N +  
Sbjct: 223 EYIDRAVPNLHIRVTPHILRHTFATNCINKKMDLKTLSLILGHEDIATTSIYLHKNKEQI 282

Query: 307 GDWMMEI 313
               +E 
Sbjct: 283 KKDFLEA 289


>gi|218905654|ref|YP_002453488.1| transposase B [Bacillus cereus AH820]
 gi|218537857|gb|ACK90255.1| transposase B [Bacillus cereus AH820]
          Length = 637

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 110/282 (39%), Gaps = 23/282 (8%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102
            R+F  F+    E    I+ I QL+  E+  ++++   + +   +    +S ++ F   L
Sbjct: 248 LREFFNFINTNCE---GIRRIHQLTRNEVEQYLNEINLKGLKPSTATGRISTLEVFFSTL 304

Query: 103 KKRKITTESNILNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           ++       + + +      K   + PR ++E        +VL   + +   ++   +A+
Sbjct: 305 QRFDWKDSPSQILIFREDYPKVPKAQPRYIDE--------HVLEQLNVKLDKLEPYMAAM 356

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           + +L  CG+RI E  +L   +++ D+     L+      K      +     A++   + 
Sbjct: 357 VMVLQECGMRIGELCTLKKGSVITDKEGDCFLKYYQWKMKKEHTIPISKEIAALILVQEQ 416

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP------LSTTAHTLRHSFA 270
              D   +  + +F    G PL    F+  + +L     +           AH  RH+  
Sbjct: 417 RVADELDDGCVYVFPRKDGSPLKQDTFRVKLNKLAYEEKITDNKGEIFRFHAHAFRHTVG 476

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           T +++NG     +Q  LGH     T  Y ++  +      ++
Sbjct: 477 TRMINNGVPQHIVQKFLGHESPEMTARYAHIFDETLKKEFIK 518


>gi|150400384|ref|YP_001324151.1| phage integrase family protein [Methanococcus vannielii SB]
 gi|150013087|gb|ABR55539.1| phage integrase family protein [Methanococcus vannielii SB]
          Length = 322

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 60/306 (19%), Positives = 124/306 (40%), Gaps = 20/306 (6%)

Query: 18  RQNWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
            + W+     ER   G+ + T++    D  +  +FL F  E     +    +  ++   F
Sbjct: 23  LKKWIDKYVSEREFDGIKESTIEG---DLNRLKVFLNFGYERL--EKEPNDMENSDFVRF 77

Query: 75  ISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            +     +K+   + KR    +K F K ++   +    N    R  K+ +S      +  
Sbjct: 78  FNYLENERKLSRNTQKRYYDVLKVFYKLMRLENLNDFKNESEDR--KRFSSFEIKHYDSL 135

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              +++ +L+           R++ I+  L+  G R+SEAL+L   +   ++   R++  
Sbjct: 136 GADILNLILMEVLESRSTTKVRDAMIIRFLWDTGARVSEALNLKYGDSDLEKGEFRLRDT 195

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQRYIRQ 249
             K     ++   +  +         ++  N    LF+  RG+PL       VF+  +++
Sbjct: 196 KGKE--ERIVTCSKDTLDFVNYCLKANIKKNPGDNLFQTYRGEPLKRNRPSDVFRNAVKE 253

Query: 250 LRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           L++   L        H+LRH  A  LL  G  +  ++  LGH  + TT  Y++ + +   
Sbjct: 254 LKKKGKLQDNKRVVIHSLRHGRAVDLLDKGMPIDIVKEYLGHKSIETTLYYSH-SKERQQ 312

Query: 308 DWMMEI 313
             + +I
Sbjct: 313 KMLNQI 318


>gi|28465873|dbj|BAC57490.1| transposaseB [Staphylococcus aureus]
          Length = 630

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 59/286 (20%), Positives = 105/286 (36%), Gaps = 24/286 (8%)

Query: 38  SYECDTRQ-FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           SY  D  Q    F  F   +   +Q + QL+  EI A++S+     I   ++   +S ++
Sbjct: 236 SYVSDIAQRLKEFFNFLDMKFKQVQRVHQLTRVEIEAYLSELNMMGIKPSTITGRISILE 295

Query: 97  SFLKYLKKRKITTESNILNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
                L + +     + + + +    K   + PR ++E   L  +++ L           
Sbjct: 296 GLFSTLLRLEWDDVPSKILIYSEDYPKIPRAKPRFIDE-FVLEQLNSHLDKLPE------ 348

Query: 154 ARNSAILYLLYGCGLRISEALSLT----PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              + +  ++  CG+RISE  +L      ++   D      Q K  K  IVP+   V   
Sbjct: 349 -YIATMTMIVQECGMRISELCTLKKGCLLEDKDGDYFLKYYQWKMKKEHIVPISKEVV-- 405

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST------TAH 263
           +L                 LF    G PL    F+  + +L     +           AH
Sbjct: 406 LLIKVREDKVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKLGEIYRFHAH 465

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             RHS  T +++NG     +Q  LGH     T  Y ++  +   + 
Sbjct: 466 AFRHSVGTRMINNGVPQHIVQKFLGHESPEMTSRYAHIFDETLKNE 511


>gi|257076019|ref|ZP_05570380.1| phage integrase family protein [Ferroplasma acidarmanus fer1]
          Length = 329

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 118/252 (46%), Gaps = 15/252 (5%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            + +    EI +++  R    +  +S++  +S +  + KY+   K  ++ ++  ++  K+
Sbjct: 37  NVNEPDIGEIYSYVEMRLRSGLKKKSVRLEISDLSHWCKYIG--KPISKDDLPVLK--KE 92

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
            +  P     +    + +  +   S + K+  ARN  ++ +L   G+R  E +    ++ 
Sbjct: 93  PDPDPFIPEPEDIQRMREFCI---SRKDKYTWARNLCMMDMLIATGMRAGELIHANLEDY 149

Query: 182 MDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
               STL I+  KG+K R VPL   +   + EY +   +  +      LF   R    N 
Sbjct: 150 --KNSTLYIRSEKGEKDRTVPLPGKLTSEVDEYIEKYRYHSDSR---ALF-TTRTGRYNY 203

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              ++ I+ +  + G+P     H+ RH +AT L+  G D+R +Q ++GH R+ TT  YT+
Sbjct: 204 NKLRQLIKYIGVHSGVP-DIHPHSFRHYYATTLVRLGVDIRRVQILVGHARIETTTRYTH 262

Query: 301 VNSKNGGDWMME 312
           +  K  G+ + E
Sbjct: 263 LTQKEVGEAVKE 274


>gi|304384215|ref|ZP_07366630.1| integrase [Prevotella marshii DSM 16973]
 gi|325270615|ref|ZP_08137213.1| integrase [Prevotella multiformis DSM 16608]
 gi|325853943|ref|ZP_08171459.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|304334716|gb|EFM00994.1| integrase [Prevotella marshii DSM 16973]
 gi|324987010|gb|EGC18995.1| integrase [Prevotella multiformis DSM 16608]
 gi|325484280|gb|EGC87210.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 417

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 57/284 (20%), Positives = 108/284 (38%), Gaps = 18/284 (6%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
                 F+ +   Y  E I +Q        ++  + +K +  K+        LS + S L
Sbjct: 142 RKHLANFVRY--RYHVEDIPVQKADAALVKDLEDYFAKEKGFKLNTS--AGYLSMLASLL 197

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           K L KR I      +N  +++     PR +  ++   +          + +  +  +  +
Sbjct: 198 KDLHKRHIIDTYPFIN-HSIRWEVGTPRYITREEVSRI----AALGEDKLQGYEKVSRDM 252

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDL 216
                  GL  ++   LT Q+I  +     I+    K   +  +PLLP     I  Y  +
Sbjct: 253 FLFSCLTGLSYTDVYHLTEQHIFHEAGMTWIRKPRIKTGNVCHIPLLPEAAAIIKRYRGI 312

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LS 275
                           I G          +++++ R  G+  + T H  RH+FA+ + LS
Sbjct: 313 HTRAFRHEPPKGYLLPIPGC----DTVNIHLKKIARLCGIQKTLTYHMARHTFASQMTLS 368

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ-TH 318
            G  + S+  +LGH ++ TTQ+Y   + +     + +I  Q  H
Sbjct: 369 KGVSIESVSKMLGHSQIKTTQVYAETSPERVFLDIEKILPQLAH 412


>gi|256377555|ref|YP_003101215.1| integrase family protein [Actinosynnema mirum DSM 43827]
 gi|255921858|gb|ACU37369.1| integrase family protein [Actinosynnema mirum DSM 43827]
          Length = 405

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 56/284 (19%), Positives = 107/284 (37%), Gaps = 31/284 (10%)

Query: 41  CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLK 100
                F  + A    + +T  +      T+++A++++         +  R L+ +K+   
Sbjct: 106 RHLHWF-RWCAGLGIDPLTAGS------TQVKAWLAQLDAAGAAVATRDRMLATVKALYT 158

Query: 101 YLKKRKITTESNI------LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +L    +   +        L +   + + +    L   Q   L D         ++   A
Sbjct: 159 HLADVGLAEGNPAALDRRRLGLVAPRGNATSTVTLTIGQVRALYDVARAPRRGASEVDTA 218

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAILE 212
           R  A++ L +  GLR+SE   L   ++  ++    LR++GKG K RIV L      A++ 
Sbjct: 219 RAGAVVAL-FTLGLRVSEICGLDRADLHVNRGRRALRVEGKGGKTRIVYLHSLAETALMG 277

Query: 213 YYDL---------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG-----LPL 258
           Y                       PL     G         + +R+L    G     +  
Sbjct: 278 YLRTQESRSKELTRADRRATAHTTPLLTTRTGNRYQRQALWQLLRRLAESGGDALLDVAD 337

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           +   H LRH + T  +  G +L ++Q+ +GH  + TT Q+Y + 
Sbjct: 338 AMHPHALRHFYVTTAVEAGAELGNVQADVGHSSIDTTSQVYNHA 381


>gi|217967670|ref|YP_002353176.1| integrase domain protein SAM domain protein [Dictyoglomus turgidum
           DSM 6724]
 gi|217336769|gb|ACK42562.1| integrase domain protein SAM domain protein [Dictyoglomus turgidum
           DSM 6724]
          Length = 227

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 96/222 (43%), Gaps = 20/222 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G    TLQ Y+     F   +            + +LS   I+ +IS  R + +   S+ 
Sbjct: 23  GKRPKTLQWYKETLIPFTKSV-----------PLEELSVYSIQKYISSLRERGLKPASID 71

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             +  IKSFL +L       E+    ++  K   S P  LN++Q L L+         + 
Sbjct: 72  THIRAIKSFLHFLYDEGYLEENISAKIKRYKLPKSYPHILNDEQILNLLKVC-----DKK 126

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRK 208
            W   RN  I+      G+R+SE L+LT  ++   + ++ I+ GKG+K R V +  ++ +
Sbjct: 127 SWDSFRNYVIVLTFLDTGIRLSELLNLTVNDVNLPKRSIFIRSGKGEKDREVYMGKTLVR 186

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            + ++  +  +      +  +F   +G PLN    +R   ++
Sbjct: 187 EMAKWLKMRGY---FPYEERVFITKQGYPLNKRGVERIFTKI 225


>gi|167762500|ref|ZP_02434627.1| hypothetical protein BACSTE_00855 [Bacteroides stercoris ATCC
           43183]
 gi|167699606|gb|EDS16185.1| hypothetical protein BACSTE_00855 [Bacteroides stercoris ATCC
           43183]
          Length = 409

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 61/292 (20%), Positives = 123/292 (42%), Gaps = 25/292 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K T  +Y+   R    F+   +  + +    + +    +   FI     +     +++ 
Sbjct: 130 AKGTYPAYDFTCRTMREFIETKFKTKDLAFGQLTEQFIHDYENFI--LDEKGYAVDTVRH 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L+ +K   K   +   +      +    K++   P+AL+ +    + D  +    H T 
Sbjct: 188 YLAILKKTCKRAYQEGHSERFMFQHYVLPKQTVKTPKALSRESFEKIRDVEI--APHRTT 245

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRIQGKGDKIR-IVPLLPSV 206
              AR+  +       G+  S+A+++T +N+    D +  L+ + K +++R  V LLP  
Sbjct: 246 HRLARD--LFLFACYTGVAYSDAVTVTRENLYTGEDGKLWLKYRRKKNELRASVKLLPEA 303

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              I +Y+D        + +  LF  I    +     + +++ L    G+  +   H  R
Sbjct: 304 VALIEKYHD--------DSRDTLFPMIHYPSM-----RNHMKALAVLAGIKENLCYHVGR 350

Query: 267 HSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           HSFA+ + L  G  + +I S+LGH  + TTQ+Y  V  K   + M  + + T
Sbjct: 351 HSFASLVTLEAGVPIETISSMLGHSNIQTTQVYARVTPKKLFEDMDRLIEAT 402


>gi|75812296|ref|YP_319915.1| Phage integrase [Anabaena variabilis ATCC 29413]
 gi|75705052|gb|ABA24726.1| Phage integrase [Anabaena variabilis ATCC 29413]
          Length = 320

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 119/273 (43%), Gaps = 17/273 (6%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+LT++       + +          +    +R      IR  +     QK    +  + 
Sbjct: 33  SRLTIEQALNAIARLIS-NGECDAYTLNWAALRYQHTAAIRTAL----MQKYAPATTNKM 87

Query: 92  LSGIKSFLKYLKKRKITTE---SNILNMRNLKKSNSLP-RALNEKQALTLVDNVLLHTSH 147
           L  ++  LK   + ++      +  ++ +N+K    L  RAL   +   L++  L     
Sbjct: 88  LCALRRVLKEALRLELMDATDYAKAVDFKNVKVKRKLRGRALTSAEIAALIEVCL----C 143

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
           +      R++A++ +L G G+R +E ++L  +++  + +    QGKGDK R V L P+  
Sbjct: 144 DPTPCGVRDAALIAILRGAGVRRAEVVNLELRDLSSNGALEIRQGKGDKDRTVYL-PTAA 202

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRG--IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            A++E +          +  P+ +G  ++ + + P      +R+     G+  S + H  
Sbjct: 203 MALVEDWLRVRGRKTGALLCPIRKGGQVQLRRMTPQAVLLIVRKRASESGVE-SFSPHDF 261

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           R +F + LL +G D+ ++Q + GH   +TT  Y
Sbjct: 262 RRTFCSDLLDSGTDIVTVQKLAGHASPATTSKY 294


>gi|296104775|ref|YP_003614921.1| phage integrase family site-specific recombinase [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295059234|gb|ADF63972.1| phage integrase family site-specific recombinase [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 361

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 94/236 (39%), Gaps = 31/236 (13%)

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R + +  R++   L+  ++    LK+    T  + + N+R  K +      L  ++A  L
Sbjct: 123 RVKTVTPRTVNLELAYFRAMFNELKRLDDWTAPNPLENVREFKIAEVELAWLTVEEATRL 182

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++      + +         AI+ +    G R  EA SLT + I   + T  I+ KG K 
Sbjct: 183 LEECEKSKADDLT-------AIVKICLATGARWGEAESLTGKQISPGKITF-IKTKGKKN 234

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL- 256
           R VP+   + + +                 PLF G               R   +  G+ 
Sbjct: 235 RAVPISEELYELL----------PKSRTSKPLFTGCYS----------AFRSAIKRAGIE 274

Query: 257 -PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            P    +H LRH+FA+H +  GG++  +Q ILGH  +  T  Y +    +  + + 
Sbjct: 275 LPDGQLSHVLRHTFASHFMMGGGNILVLQRILGHTDIKVTMRYAHFAPDHLTEAVQ 330


>gi|319641880|ref|ZP_07996555.1| integrase [Bacteroides sp. 3_1_40A]
 gi|317386499|gb|EFV67403.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 412

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 108/278 (38%), Gaps = 17/278 (6%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
                +F+     Y  E I IQ        E+  + +K +  K+        LS + S L
Sbjct: 137 RRHLSEFIKCH--YHMEDIPIQKADITFVKELEEYFAKEKEFKLNTS--AGYLSMLASLL 192

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           K L KR +      +   +++     PR + +++   +V      +  + +  +  +  +
Sbjct: 193 KDLYKRHVIETYPFIA-HSIRWDVGTPRYITKEEVGRIV----ALSEKDLQSYELVSRDM 247

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDL 216
                  GL  ++    T ++++++     I+    K   I  +PLLP     I  Y  +
Sbjct: 248 FLFSCYTGLSYTDIYHFTTEHLVEEDGMTWIRKPRVKTGNICYIPLLPEASAIIERYRGI 307

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LS 275
                           I G          +++++ R  G+    T H  RH+FA+ + LS
Sbjct: 308 HTRAFRHEPPKGYLLPIPGC----DTVNIHLKKIARLCGITKKLTFHMARHTFASQMTLS 363

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G  + S+  +LGH ++ TTQ+Y   + +     + +I
Sbjct: 364 EGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKI 401


>gi|269126622|ref|YP_003299992.1| integrase family protein [Thermomonospora curvata DSM 43183]
 gi|268311580|gb|ACY97954.1| integrase family protein [Thermomonospora curvata DSM 43183]
          Length = 345

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 57/284 (20%), Positives = 111/284 (39%), Gaps = 26/284 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQT--------IRQLSYTEIRAFISKRRTQK- 82
           S  + ++      +    L     +              +R      IRA I+++ T   
Sbjct: 40  SPGSQRAMAACLHRIAAMLLTAHGQDPGPAPAETFPWAALRAEHTEAIRALIAQQTTHGP 99

Query: 83  -----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLP--RALNEKQ 133
                       + LS ++  L+   +  + +         ++      LP  R+++ ++
Sbjct: 100 EGPRPWSPAYRNKHLSALRGVLQTAWRLGLMSTEEHRRATAVRNFPGTRLPAGRSVHAEE 159

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+         +      R++A+L +LY  G R SE  +L  ++    + +LRI GK
Sbjct: 160 FAALLQVCRA----DPTPAGRRDAALLAVLYTTGARRSEISTLRREHYDPGERSLRIIGK 215

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG--IRGKPLNPGVFQRYIRQLR 251
           GDK R+  + P   + +  +  L        +  P+ R   I+ + ++    +  + + R
Sbjct: 216 GDKERLEYVHPQAAQLLGAWLALQDRPTGP-LFTPVHRSGAIQQRAMSDAAVRNVVVKRR 274

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           R   LP   T H  R +F  +LL  G DL + Q ++GH   +TT
Sbjct: 275 RQANLP-PMTPHDFRRTFIGNLLDAGVDLVTAQQLVGHASPATT 317


>gi|15900420|ref|NP_345024.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae TIGR4]
 gi|111656906|ref|ZP_01407732.1| hypothetical protein SpneT_02001846 [Streptococcus pneumoniae
           TIGR4]
 gi|148988249|ref|ZP_01819712.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP6-BS73]
 gi|148993501|ref|ZP_01822992.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP9-BS68]
 gi|148996902|ref|ZP_01824620.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|149005620|ref|ZP_01829359.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP18-BS74]
 gi|149026392|ref|ZP_01836530.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP23-BS72]
 gi|168482749|ref|ZP_02707701.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC1873-00]
 gi|168485036|ref|ZP_02709974.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC1873-00]
 gi|168488195|ref|ZP_02712394.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae SP195]
 gi|169834025|ref|YP_001694006.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae Hungary19A-6]
 gi|221231343|ref|YP_002510495.1| phage integrase/recombinase [Streptococcus pneumoniae ATCC 700669]
 gi|225854059|ref|YP_002735571.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae JJA]
 gi|225856225|ref|YP_002737736.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae P1031]
 gi|298229903|ref|ZP_06963584.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298256069|ref|ZP_06979655.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298502303|ref|YP_003724243.1| integrase/recombinase [Streptococcus pneumoniae TCH8431/19A]
 gi|303260805|ref|ZP_07346758.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP-BS293]
 gi|303263137|ref|ZP_07349063.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP14-BS292]
 gi|303265412|ref|ZP_07351316.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS397]
 gi|303267711|ref|ZP_07353531.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS457]
 gi|303270083|ref|ZP_07355795.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS458]
 gi|307067137|ref|YP_003876103.1| integrase [Streptococcus pneumoniae AP200]
 gi|307126721|ref|YP_003878752.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae 670-6B]
 gi|14971979|gb|AAK74664.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae TIGR4]
 gi|147757477|gb|EDK64516.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|147762560|gb|EDK69520.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP18-BS74]
 gi|147926713|gb|EDK77786.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP6-BS73]
 gi|147927870|gb|EDK78891.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP9-BS68]
 gi|147929275|gb|EDK80275.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP23-BS72]
 gi|168996527|gb|ACA37139.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae Hungary19A-6]
 gi|172041857|gb|EDT49903.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC1873-00]
 gi|172043607|gb|EDT51653.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC1873-00]
 gi|183573161|gb|EDT93689.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae SP195]
 gi|220673803|emb|CAR68305.1| putative phage integrase/recombinase [Streptococcus pneumoniae ATCC
           700669]
 gi|225723018|gb|ACO18871.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae JJA]
 gi|225725635|gb|ACO21487.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae P1031]
 gi|298237898|gb|ADI69029.1| integrase/recombinase [Streptococcus pneumoniae TCH8431/19A]
 gi|301801395|emb|CBW34081.1| putative phage integrase/recombinase [Streptococcus pneumoniae
           INV200]
 gi|302635724|gb|EFL66233.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP14-BS292]
 gi|302638054|gb|EFL68536.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP-BS293]
 gi|302640385|gb|EFL70820.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS458]
 gi|302642755|gb|EFL73082.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS457]
 gi|302645053|gb|EFL75296.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS397]
 gi|306408674|gb|ADM84101.1| Integrase [Streptococcus pneumoniae AP200]
 gi|306483783|gb|ADM90652.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae 670-6B]
 gi|327390253|gb|EGE88594.1| phage integrase family protein [Streptococcus pneumoniae GA04375]
 gi|332074783|gb|EGI85256.1| phage integrase family protein [Streptococcus pneumoniae GA17570]
 gi|332204531|gb|EGJ18596.1| phage integrase family protein [Streptococcus pneumoniae GA47901]
          Length = 265

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 115/298 (38%), Gaps = 36/298 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++  +L+   GL++ T++SY    R FL                 +L   ++  +    
Sbjct: 2   KDFELHLKKA-GLAENTVRSYLYGVRFFLENY--------------ELKMEDLFEYKGYL 46

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  +++   L G+  +L ++    +        ++ +K        L  +  ++  
Sbjct: 47  LDN-FKPKTVNLRLQGVNKYLAFIGHDDL-------KLKFVKVQQKP--FL--EDVISHA 94

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D + L  S +   I      +++ L   G R+SE + L  +++  +     I  KG KIR
Sbjct: 95  DYLFLKRSLKKDGILKW-HFVVWFLGATGARVSELIKLKVEHV--EIGYFDIYSKGGKIR 151

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-P 257
            + +   +R + L +      +        LF     +P+      + ++       + P
Sbjct: 152 RLYIPKKLRNSCLSWL-----ESENRRSGYLFLNKFNEPITARGVAQQLKNYADKYKMNP 206

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                H+ RH FA + L+   D+  +  ++GH  + TT+IY    +    + + +I +
Sbjct: 207 KVIYPHSFRHLFAKNFLAKYNDIALLADLMGHESIETTRIYLRKTATEQQNIVDKIVN 264


>gi|899056|gb|AAA87238.1| lambda integrase family of site specific recombinase; ORF2 [Plasmid
           pAE1]
          Length = 415

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 115/299 (38%), Gaps = 14/299 (4%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E+ +  + +L +L  +RGL+K +L  Y    R FL   +   +  I       ++  +  
Sbjct: 109 EIARIYRRYLDHLRQDRGLAKNSLLVYGPFIRDFLDSHS-ANDGTILADAFCAVTIRD-- 165

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLPRALN 130
            F++   ++       +     ++SF  +L  R  T      ++ +++K    ++P  L 
Sbjct: 166 HFLTY--SEGRSAEYTRLMAVALRSFCHFLFLRGDTARDLYESVPSVRKWRQSTVPTFLT 223

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            +Q   L+      ++  +     R+ AIL LL   GLR  E +++   +I      L +
Sbjct: 224 PEQQEALI-----ASADRSTPTGRRDYAILLLLARLGLRAGEIVAMQLDDIHWRSGELVV 278

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            GKG  +  VPL   V  AI  Y                    R     P    + + Q 
Sbjct: 279 HGKGQMVEHVPLPSEVGAAIATYLRDGRGASASRHVFLRRLAPRVGLAGPAAIGKIVCQA 338

Query: 251 RRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
               G       +AH  RH  AT ++ +G  +  I  +L H    +T IY  V  ++  
Sbjct: 339 FARAGFRPACRGSAHLFRHGLATTMIRHGASIAEIAEVLRHRSPDSTAIYAKVAFEDLA 397


>gi|94498364|ref|ZP_01304923.1| putative integrase [Sphingomonas sp. SKA58]
 gi|94422244|gb|EAT07286.1| putative integrase [Sphingomonas sp. SKA58]
          Length = 410

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 62/307 (20%), Positives = 117/307 (38%), Gaps = 20/307 (6%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            E+ +E + WL     ERGL+  ++ +   + R FL +      ++    ++  LS  +I
Sbjct: 112 HEICREYEAWL---REERGLASASIAALMWEARNFLRW----QFDRAGAASLETLSIVDI 164

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS--NSLPRAL 129
             ++   R   +  +SL      ++S +++L +          ++          +P  L
Sbjct: 165 DLYM-DMRAPGLRRKSLADVAERLRSVVRHLHRTGRIPTDLTPHIIGPMLYAYEDVPSTL 223

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              Q   +    L  T  +      R+ AIL LL   GLR  E   L   ++     +LR
Sbjct: 224 ERSQIAAV----LATTQEDRSPRGLRDYAILQLLATYGLREGEICRLRLDDVDWRAESLR 279

Query: 190 IQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           I   K +    +PL+ +V +A+L+Y  L    + +     +F       +        IR
Sbjct: 280 ICHTKTNAYSYMPLMVTVGEALLDYLRLGRPQVEVRE---IFVRSCAPYIAMTNLYGMIR 336

Query: 249 QLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
                 G+        H  RH+ A  +L      + I  +LGH    +T  Y  + + + 
Sbjct: 337 GRLAAAGVVPAGKRGPHVFRHARAVEMLRASVPQKIIGDVLGHRSTESTNTYLKLATDDL 396

Query: 307 GDWMMEI 313
               +E+
Sbjct: 397 RAVALEV 403


>gi|312109773|ref|YP_003988089.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|311214874|gb|ADP73478.1| integrase family protein [Geobacillus sp. Y4.1MC1]
          Length = 297

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 121/291 (41%), Gaps = 22/291 (7%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M  N++ +  + +     + +L++ EI R     T+Q Y     +  +F     E++I +
Sbjct: 16  MHANSI-QSDAIDFQIALEKFLEDCEI-RNCRPQTIQYYRN---EMSVFYKLLREQEIEV 70

Query: 61  QTIRQLSYTEIRA--FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNM 116
             I +++   I+    +  +  +K    ++   L  +++F  +L++ KI ++  +    +
Sbjct: 71  -NIYRMTPEIIKQNVILYMKNQKKCKTVTINTRLRALRAFFNFLEREKIISKKQNPFHEI 129

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           + LK          +++      ++L    +   +   R+  ++ LL   G+R SE + +
Sbjct: 130 KLLKDRKKAVPTYTKEEI-----HILFKQPNLRTFTGVRDLTLMMLLLETGIRASECVGI 184

Query: 177 TPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
              +I   +S + IQ  KG + R VP+   +++ + +Y  +            LF  I  
Sbjct: 185 RLGDIDFQRSRILIQNTKGYRQRYVPIQKQMKEQLKKYLAIRGTL----DHDYLFVSIDD 240

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
            PL     Q  I    +  G+    T H  RH+FA   +  G  +   Q +
Sbjct: 241 TPLTKRQMQAQIESYGKKCGI--HATCHKFRHTFARLSVEAGAGVFCKQKM 289


>gi|228911396|ref|ZP_04075196.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis IBL 200]
 gi|228848231|gb|EEM93085.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis IBL 200]
          Length = 356

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 48/302 (15%), Positives = 113/302 (37%), Gaps = 35/302 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
             ++L + SYE D       +  Y       + I+ +    I+++ ++ + + + + ++ 
Sbjct: 54  RKAELKITSYEKDI----SLVKLYILPTFGYKKIKSIKPVIIQSYYAELKEKGLSNGTIS 109

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
                 +   K+  + +I  ++ +  ++  ++     +  + ++    +        H  
Sbjct: 110 NIHRCFRCIFKHAVEWEILHDNIMNKVKKPREEQVEMKTWSSEECNRFL--------HYL 161

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---------------KG 194
           K  + +      L    G+R  E L+LT ++I  D   + +                   
Sbjct: 162 KEKNKKYYMFFLLAIYTGMRRGELLALTWKDIDFDNQRILVNKSLVKTEEGLFKAATKTK 221

Query: 195 DKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIR 248
              R + +   V   +  YY     +   + ++LN +  +F G     PL+     R+++
Sbjct: 222 SSNRSISISSFVVIELQTYYLYKKKEFFRWGISLNEEAYIFAGNTIHSPLHIDAPHRFLK 281

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGG 307
              +  G+P     H LRH+ AT +L  G   + +Q  LGH  +  T   Y+++      
Sbjct: 282 DHYKKAGVPR-IRIHDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQNMQQ 340

Query: 308 DW 309
             
Sbjct: 341 QA 342


>gi|52841461|ref|YP_095260.1| site specific recombinase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628572|gb|AAU27313.1| site specific recombinase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 405

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 58/285 (20%), Positives = 111/285 (38%), Gaps = 35/285 (12%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           +K+  + + +++ + I  +  KR    I + +L R +  +KS      +     E+ + N
Sbjct: 125 DKLFSKPLEEITPSIIEQWRIKRLNDGISNATLNRDIGTLKSLFTKAVEWGFIKENYLKN 184

Query: 116 M------RNLK-------KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-------- 154
           +      R  K       +  +L RAL E++     D    +   + +  D         
Sbjct: 185 LKLSKIDRAPKVRYLSIDEERNLRRALFEREGKLKQDRKRGNEWRQARGYDLLPEYEENE 244

Query: 155 -RNSA--ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRK 208
             +    ++ +    GLR  E   LT + I   + ++ I G   K    R +PL   V  
Sbjct: 245 LCDYLTPMVLISINTGLRQGELFHLTWEMIDLQERSIIIAGQITKNSSSRYIPLNNEVYG 304

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            I + Y+       L     +F     KP N    +R    + +   +      H LRH 
Sbjct: 305 IIKQLYEKSNSKKGL-----VFLSKDNKPFN--NIKRSWTTILKKAQIT-EFRWHDLRHH 356

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           FA+ L+  G DL +++ +LGH  +  T  Y ++  ++    + +I
Sbjct: 357 FASKLVMAGIDLNTVRELLGHSDIKMTLRYAHLAPEHKIKAVNKI 401


>gi|313123990|ref|YP_004034249.1| integrase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280553|gb|ADQ61272.1| Putative integrase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 370

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 61/308 (19%), Positives = 107/308 (34%), Gaps = 31/308 (10%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L + E ERG+   TL             L ++ E+ I     + ++   +  ++     
Sbjct: 78  FLDH-ERERGVKPTTLSVRRT---GMSAMLKYFGEDAIA----KNITKPMVTKYLQSSLK 129

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +K  + ++     G+ +   +       TE+    +R   K    P ++ +K       N
Sbjct: 130 KK-TNSTVHVYRVGMSTMYDFAIDYGYLTENPAKGLRIQWKPQK-PTSITDKYFTDEELN 187

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ----STLRIQGKGDK 196
            L        ++      +   +Y  G+R  EA  L  +NI D       T+   G    
Sbjct: 188 NLFAVIDRPDYLR-----LFKFMYLTGMRFGEATGLQFKNIHDQYADITGTMWANGIKSD 242

Query: 197 I-------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIR 248
                   R V L     + I        +D N      +F    +  P        Y++
Sbjct: 243 SPKTLASFRSVFLPKQAVEIIK---WFKQYDRNTEPDDFIFINQLKHVPFKMNTVALYLK 299

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGG 307
              R  G+    T H  RH+  + L   G  L  IQ  +GH +  TT +IY +V  K   
Sbjct: 300 NKSREAGIDRKITTHFFRHTHISKLAEQGVPLHVIQKRVGHTKAETTREIYLHVTKKMQE 359

Query: 308 DWMMEIYD 315
           +   +I D
Sbjct: 360 EMEKQIND 367


>gi|51597440|ref|YP_071631.1| phage integrase/recombinase [Yersinia pseudotuberculosis IP 32953]
 gi|51590722|emb|CAH22367.1| Possible phage integrase/recombinase [Yersinia pseudotuberculosis
           IP 32953]
          Length = 327

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 67/300 (22%), Positives = 116/300 (38%), Gaps = 36/300 (12%)

Query: 17  ERQNWLQNLEIERGLSKL-TLQ-SYECDTRQFLIFLAFYTEEKITIQT---IRQLSYTEI 71
             + WL     +R LS+L TL  SY      +         + I I +     Q+    I
Sbjct: 47  HEKEWLSKPTDKRSLSELSTLWWSYHGQNMDYGQKYKVQLAKVIRIMSDLCAFQIDKNVI 106

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILNMRNLKKSNSLPRALN 130
             + + R    +   S+ R L+ +      L       +E  +  +  LK   +    L+
Sbjct: 107 ARYRAIRLAGGVKASSVNRDLAVLSGMFTALINAGVYHSEHPLAGISKLKPKQTARAFLS 166

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           + +   L++            +D  N  +  L    G R  EA+ L  ++I+D++ T  +
Sbjct: 167 QSEIKKLLNC-----------LDGDNRRVAILCLSTGARWGEAIKLRTEHIIDNRITF-V 214

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
             K  K R VP+   V             DL       LF           +F++ ++ +
Sbjct: 215 ATKNGKQRTVPISSDV-----------FNDLTAMKSGLLFNDAAYL-----IFRQKLKSV 258

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                LP     H LRH+FATH + NGG++ ++Q ILGH  +  T +Y + +     D +
Sbjct: 259 --KTDLPQGQATHVLRHTFATHFMINGGNIITLQRILGHSTIQQTMLYAHFSPDYLQDAV 316


>gi|325694509|gb|EGD36418.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK150]
          Length = 356

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 110/326 (33%), Gaps = 45/326 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  +  +F  ++            +I +  +  ++  ++ AFI   R +   
Sbjct: 33  YSFTTLYEYLKEYDRFFNWMLESGITDASHIAEIPLSILENMTKKDMEAFILYLRERPLL 92

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                   +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 93  NANTTQNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATKKKKETLAA 152

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA--------RNSAILYLLYGCGLRIS 171
           +  N   +     +    +  +      +              R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETEEFLQYIDTEYPKKLSNRALSSFNKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLF 230
           EA++L  ++I      + +  KG K   V +    +  + EY  +              F
Sbjct: 213 EAVNLDLKDINLKMMVIEVTRKGGKRDSVNVAAFAKSYLEEYLSIRSKRYKAEKTDTAFF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +        +  T H LRH+ AT L         +   L
Sbjct: 273 LTEYRGTPNRIDASSVEKMVAKYSE--SFKVRVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH     T +YT++ +    + + ++
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNALDKL 356


>gi|295701377|ref|YP_003610378.1| integrase [Burkholderia sp. CCGE1002]
 gi|295441700|gb|ADG20867.1| integrase family protein [Burkholderia sp. CCGE1002]
          Length = 570

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 69/330 (20%), Positives = 125/330 (37%), Gaps = 42/330 (12%)

Query: 16  KERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           KE +  +    +ERG  LS LT +    D   +  FL         +  +R  +  + R 
Sbjct: 246 KEAERLILWAIVERGRALSSLTTE----DAIAYRTFLRHPAPHARWVGPVRPRTSPDWRP 301

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F        +  RS+  +LS + +  ++L +++    +    ++   +  S    L+   
Sbjct: 302 F-----NGSLSARSVAHALSILGALFRWLIEQRYVLANPFAGVKV--REASGANVLDTSH 354

Query: 134 ALTLVDNVLLHT-SHETKWIDARN-------SAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           A T  +  L+ T +   +W    +         +L   Y  GLR SE +  T  +I  D 
Sbjct: 355 AFTEGEWALVRTIADGLEWSYGWSAPAAHRLRFLLDFGYATGLRASELVGATLGHIETDA 414

Query: 186 S---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLN 239
                LR+ GKG K+  V L P    A+  Y       +       + P+   +     +
Sbjct: 415 RGDHWLRVTGKGRKLARVALPPLAWDALAHYLAERELPIAPVRWRPETPVIGSLEADSES 474

Query: 240 P-------GVFQRYIRQLRRYLGLPLS--------TTAHTLRHSFATHLLSNGGDLRSIQ 284
                   GV +R+     + +              + H +RH+ ATH L  G +L +++
Sbjct: 475 TISSVRLWGVLRRFFLVAAKSIEADHPPLAEKLRCASPHWMRHTHATHALGRGAELTTVR 534

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
             L H  +STT IY + +       + E +
Sbjct: 535 DNLRHASVSTTSIYLHSDEVKRARQIGEAF 564


>gi|85707318|ref|ZP_01038402.1| probable site-specific integrase/recombinase [Roseovarius sp. 217]
 gi|85707509|ref|ZP_01038585.1| probable site-specific integrase/recombinase [Roseovarius sp. 217]
 gi|85667966|gb|EAQ22851.1| probable site-specific integrase/recombinase [Roseovarius sp. 217]
 gi|85668199|gb|EAQ23076.1| probable site-specific integrase/recombinase [Roseovarius sp. 217]
          Length = 363

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 65/309 (21%), Positives = 117/309 (37%), Gaps = 31/309 (10%)

Query: 4   NNLPEIVSF----ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
           + LP+  S      +L E ++W   +   RG+   TL +Y+       + L         
Sbjct: 61  DPLPKPPSPSDRWPILGEFRDW---MLRNRGVLDSTLDTYQNILVHMFLVLG-------- 109

Query: 60  IQTIRQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
                  S   IR F+  R     +    +  +++  ++FL++L             + N
Sbjct: 110 -DAPEAYSAHAIREFVLGRAGMHGVAHARI--TVTATRAFLRFLIATGRCPAGRDQAIPN 166

Query: 119 LKKSN--SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
                   +P  LN+     +V                R+ A++  L   GLR SE  +L
Sbjct: 167 FAGWQLAPVPDFLNDTDITRIVAACSGEAR-------LRDRAVILFLVRLGLRASEVANL 219

Query: 177 TPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
              +I      + I+G K  +   +PL   V +A+L Y D          ++ +      
Sbjct: 220 EFDHIDWRNGRIAIRGGKSRREEWLPLPQEVGEALLAYLD-RGRPSFATPRVFVTAKNPM 278

Query: 236 KPLNPGVFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           +P++       ++      G+      +H LRHS AT +L +G +L  + ++L H  LST
Sbjct: 279 RPMSRFAVNCLVQAALDRAGIQSGRRGSHLLRHSAATAMLRHGVNLAGVGAVLRHRSLST 338

Query: 295 TQIYTNVNS 303
           T  Y  V+ 
Sbjct: 339 TMQYAKVDF 347


>gi|157151597|ref|YP_001450415.1| site-specific tyrosine recombinase XerS [Streptococcus gordonii
           str. Challis substr. CH1]
 gi|189030086|sp|A8AXA5|XERS_STRGC RecName: Full=Tyrosine recombinase xerS
 gi|157076391|gb|ABV11074.1| Tyrosine recombinase xerC [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 356

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 110/326 (33%), Gaps = 45/326 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  +  +F  ++            +I +  +  ++  ++ AFI   R +   
Sbjct: 33  YSFTTLYEYLKEYDRFFNWVLESGITNASHIAEIPLSVLENMTKKDMEAFILYLRERPLL 92

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                   +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 93  NANTTQNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATKKKKETLAA 152

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA--------RNSAILYLLYGCGLRIS 171
           +  N   +     +    +  +      +              R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETEEFLQYIDREYPKKLSNRALSSFNKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLF 230
           EA++L  ++I      + +  KG K   V +    +  + EY  +              F
Sbjct: 213 EAVNLDLKDINLKMMVIEVTRKGGKRDSVNVAAFAKPYLEEYLSIRSKRYKAEKTDTAFF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +        +  T H LRH+ AT L         +   L
Sbjct: 273 LTEYRGTPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH     T +YT++ +    + + ++
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNALNKL 356


>gi|307591331|ref|YP_003900130.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306986185|gb|ADN18064.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 318

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 58/276 (21%), Positives = 114/276 (41%), Gaps = 16/276 (5%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           L   ++        +    L     + +T+    QL Y    A +     QK    ++  
Sbjct: 32  LRPNSVPIVRRHLDELAQILTDNQCDAMTL-NWGQLRYQH-TASLRAVLIQKYSPGTVNH 89

Query: 91  SLSGIKSFLKYLKKRKIT---TESNILNMRNLKKSNS--LPRALNEKQALTLVDNVLLHT 145
            L  ++  L+  KK K+      S+ + + +++        RAL+  +   L  ++L   
Sbjct: 90  KLCALRRVLREAKKLKLITLEDYSDAIEIDSVRNHQPSLKGRALSSLEIQVLFTHLL--- 146

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLP 204
              +     R++A+L +L G GLR +E +SL   +       + ++ GKG K R V L  
Sbjct: 147 -ELSTISSFRDAALLAVLLGSGLRRAEVVSLDLADFNHSTGGIEVREGKGGKNRTVYLPD 205

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYLGLPLSTTA 262
                ++++ +L  F     +   + +G R   + ++       +++     G+    + 
Sbjct: 206 WGTSLVVQWLNLRGFRPGP-LFYAVNKGQRIVKRRMSGQAVLYILQKRASDAGIEQ-VSP 263

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           H LR +F + LL  G DL ++Q + GH   +TT  Y
Sbjct: 264 HDLRRTFISGLLDAGIDLVTVQKLAGHSDPATTARY 299


>gi|229020983|ref|ZP_04177670.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus AH1273]
 gi|229023655|ref|ZP_04180148.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus AH1272]
 gi|228737691|gb|EEL88194.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus AH1272]
 gi|228740336|gb|EEL90647.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus AH1273]
          Length = 379

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 49/302 (16%), Positives = 114/302 (37%), Gaps = 35/302 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
             ++L + SYE D    +  +  Y       + I+ +    I+++ ++ + + + + ++ 
Sbjct: 76  RKAELKITSYEKD----MSLVKLYILPTFGYKKIKSIKPVIIQSYYAELKEKGLSNGTIS 131

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
                 +   K+  + +I  ++ +  ++  ++     +  + K+    +        H  
Sbjct: 132 NIHRCFRCIFKHAVEWEILHDNIMNKVKKPREEQGEMKTWSSKECNRFL--------HYL 183

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---------------KG 194
           K  + +      L    G+R  E L+LT ++I  D   + +                   
Sbjct: 184 KEKNKKYYIFFLLAIYTGMRRGELLALTWKDIDFDNKRILVNKSLVKTEEGLFKAATKTK 243

Query: 195 DKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIR 248
              R + +   V   +  YY     +   + ++LN +  +F G     PL+     R+++
Sbjct: 244 SSNRSISISSFVVTELQSYYAYKKKEFFRWGIHLNEEAYIFAGNTIHSPLHIDAPHRFLK 303

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGG 307
              +  G+P     H LRH+ AT +L  G   + +Q  LGH  +  T   Y+++      
Sbjct: 304 DHYKKAGVPR-IRIHDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQNMQQ 362

Query: 308 DW 309
             
Sbjct: 363 QA 364


>gi|22096307|gb|AAM92160.1| TnpB-like protein [Staphylococcus aureus]
          Length = 632

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 54/294 (18%), Positives = 104/294 (35%), Gaps = 25/294 (8%)

Query: 31  LSKLTLQ-SYECDTR-QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           L   T+  S+  D   +   F  F  +    +  + QL+  +I  ++++     I   +L
Sbjct: 228 LKLNTVSFSHVSDIAGRLKEFFVFLNKNYKHLTRLHQLTREQIEHYLAELNKSGIKPSTL 287

Query: 89  KRSLSGIKSFL---KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
              +S +  F    +      + ++  +      K   + PR ++E   L  +++ L   
Sbjct: 288 MGKISVLDGFFTTIQKFDWNDVPSKILVFQEDYPKVPKATPRYIDEY-VLEQLNSHLDDL 346

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLT----PQNIMDDQSTLRIQGKGDKIRIVP 201
                   A  + ++ ++   G+RISE  +L      ++   D      Q K  K   +P
Sbjct: 347 P-------AYIATMVMIIQEGGMRISELCTLKRDCLLEDKEGDYFLKYYQWKMKKEHTIP 399

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI------RQLRRYLG 255
           +   V   I                  LF    G PL    F+R +      + +    G
Sbjct: 400 ISREVAGLIKA--HEKHVSEEFGGCEYLFPRKDGSPLKQDTFRRELNEVAHKKNIVDRAG 457

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                 AH  RH+  T +++NG     +Q  LGH     T  Y ++  +   + 
Sbjct: 458 SVFRFHAHAFRHTVGTRMINNGIPQHIVQKFLGHESPEMTSRYAHIFDETLKEE 511


>gi|323692935|ref|ZP_08107157.1| integrase [Clostridium symbiosum WAL-14673]
 gi|323503018|gb|EGB18858.1| integrase [Clostridium symbiosum WAL-14673]
          Length = 320

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 49/300 (16%), Positives = 117/300 (39%), Gaps = 37/300 (12%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++   L  +  +S+ T+  Y    RQF                  +++Y+ ++ +   
Sbjct: 55  IEDYRLYLSAQ-NMSENTIHVYAYAIRQFFALY-------------HEITYSNLKLYKVF 100

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLKKSNSLPRALNEKQALT 136
              +    +++   +  + S++++ K       +   + M  ++  N L   ++E     
Sbjct: 101 LL-EHYKPQTVNLRIRALNSYIEFKKL------NPGKIPMVRIQHKNYLDNVISEADYEY 153

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L + +L                I+  +   G R+SE +    ++I      +    KG+K
Sbjct: 154 LKNCLLRDEK-------YLYYFIIRFMAATGARVSEVIQFEAEDIFTGYKDIY--SKGNK 204

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +R + +  +++K  + +      +     +  +F    G P+ PG  +  ++ +     +
Sbjct: 205 VRRIYVPKALQKDAIAWLKAIRQE-----RGFVFLNRYGNPITPGGIRGQLKNMALAYWM 259

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                  H+ RH FA   +   GD+  +  +LGH  L TT+IY   +S    + + ++ D
Sbjct: 260 NPEVVHPHSFRHRFAKSFIEKCGDISLLSDLLGHKNLETTRIYLRRSSSEQYEIINKVVD 319


>gi|260101469|ref|ZP_05751706.1| phage integrase family site-specific recombinase [Lactobacillus
           helveticus DSM 20075]
 gi|260084723|gb|EEW68843.1| phage integrase family site-specific recombinase [Lactobacillus
           helveticus DSM 20075]
          Length = 350

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 61/349 (17%), Positives = 122/349 (34%), Gaps = 42/349 (12%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF------YT 54
           ME      ++  EL     ++++   +    S  T   Y  + R+F  +L          
Sbjct: 1   MESTKYLSLIKTEL-DNMPDFVKQYNLGTNHSLTTTYQYLTEIRRFFDWLRQEGISSAQD 59

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKI------GDRSLKRSLSGIKSFLKY------- 101
            + I   T+  L   +I  +I      K          ++ RS++ ++S  K+       
Sbjct: 60  NQHILPDTLANLRRNDIMLYIDNLGHTKNKQGHLNSPTTINRSINALRSLFKFLTITADN 119

Query: 102 LKKRKITTESNILNMRNLKKSNSLPRALNEKQ----------------ALTLVDNVLLHT 145
              +     + +L + +L  + +L    +  +                A    +      
Sbjct: 120 NNGKSYFERNVMLKIESLNDTKTLNYRAHVLESHMYTGNLKFEFLKFIAHDYENKCNKQA 179

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
               K    R+ AI+ L+ G G+R+SE   +  Q++    + L +  KG +   VP+   
Sbjct: 180 KPGFKKNKERDMAIIALILGTGIRVSECAGVDMQDLNIKDAILDVTRKGGQKDSVPIAEW 239

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLSTT 261
               I +Y  +       + +   F   R       +     ++ + +     G P   T
Sbjct: 240 TLDYIKKYKKIRAERYMADPKQTAFFLTRWHNQTKRMTTNAIEKMVNKYSASFGHP--LT 297

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            H LRH+ A+ L +   D   +   LG    + T +YT+V+ K     +
Sbjct: 298 PHKLRHTLASELYAVTKDQVLVAQQLGQKGTTATDLYTHVDQKKQRAAL 346


>gi|324323967|gb|ADY25010.1| integrase family protein [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 390

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 64/307 (20%), Positives = 115/307 (37%), Gaps = 34/307 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEE--------KITIQTIRQLSYTEIRAFISKRRT 80
           +   + T +SY  +   F   +  + EE        +     ++ L    IR + +  + 
Sbjct: 81  KNRKEGTKKSYISEILSFCQCMVQHAEEFELNGEEVQQNDSLLKTLQPWHIRKYNAWLKQ 140

Query: 81  -------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--NLKKSNSLPRALNE 131
                        +L +    I+SFLK+L       +     ++  N+ + +   R L+ 
Sbjct: 141 VENGRNGDTYAVATLAKKTVLIRSFLKHLHVFSYIEKPLYEELQRANVNEQDRPNRDLSY 200

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRI 190
           ++ + ++                 N  IL  L   G RI E  +   ++   D +  L++
Sbjct: 201 EEVMKILGFYKEQG-------HLVNYTILLALASTGARIQELCTTRVKDLHYDGKHWLKV 253

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            GKG K+R + +   + + I E      F   L+   + PLF   RG   N       + 
Sbjct: 254 IGKGSKVRELFISEHLYECICEMRRRRGFQTVLDRGDESPLFVNQRGNFYNSKTLSNXVT 313

Query: 249 QLRRYLGLPL------STTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTNV 301
            + +   L          TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   
Sbjct: 314 DMIKKTNLEFLQYRENPVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEK 373

Query: 302 NSKNGGD 308
           + K   +
Sbjct: 374 HMKRKNN 380


>gi|271965097|ref|YP_003339293.1| phage integrase family protein [Streptosporangium roseum DSM 43021]
 gi|270508272|gb|ACZ86550.1| phage integrase family protein [Streptosporangium roseum DSM 43021]
          Length = 309

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 63/289 (21%), Positives = 119/289 (41%), Gaps = 28/289 (9%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSLKRSLS 93
           T ++Y+   R FL +L     +   +       +  +R + +  +T       ++   L+
Sbjct: 32  TRRAYDSRVRTFLAWLDASGLDSDPLTDAHDRDFA-VRDYKTHMKTVLHRASNTVNAHLT 90

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            +  F      +     + +      K +   PRAL+ +Q    +  V        +   
Sbjct: 91  ALDHFF----SQLGLGPAVVRRDDAPKLA---PRALDARQQKRYLRAV-------ERRPL 136

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGDKIRIVPLLP-SVRKA 209
           AR+ AI  LL+  G+RI+E ++L   ++         +   GKG+  R +PLL  + R +
Sbjct: 137 ARDRAIGRLLFYSGVRIAELVALDDNDVPLSARKGKVIVRSGKGETSREIPLLDGTARAS 196

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-----PLSTTAHT 264
           + E+               L    RG  L+     + + +L     +      L+ +AH 
Sbjct: 197 VTEWRTERASWPGATDNPALLLNRRGGRLSTRAVDQLVDELAADADILDEAGALALSAHI 256

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY---TNVNSKNGGDWM 310
           LRH+ AT+LL  G D+  +  +LGH RL TT+ Y   T+ + ++    +
Sbjct: 257 LRHTLATNLLRAGVDIVVVAELLGHARLDTTRRYTLPTHADLEDAVGRL 305


>gi|168485626|ref|ZP_02710134.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC1087-00]
 gi|183571275|gb|EDT91803.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC1087-00]
          Length = 265

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 115/298 (38%), Gaps = 36/298 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++  +L+   GL++ T++SY    R FL                 +L   ++  +    
Sbjct: 2   KDFELHLKKA-GLAENTVRSYLYGVRFFLENY--------------ELKMEDLFEYKGYL 46

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  +++   L G+  +L ++    +        ++ +K        L  +  ++  
Sbjct: 47  LDN-FKPKTVNLRLQGVNKYLTFIGHDNL-------KLKFVKVQQKP--FL--EDVISHA 94

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D + L  S +   I      +++ L   G R+SE + L  +++  +     I  KG KIR
Sbjct: 95  DYLFLKRSLKKDGILKW-HFVVWFLGATGARVSELIKLKVEHV--EIGYFDIYSKGGKIR 151

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-P 257
            + +   +R + L +      +        LF     +P+      + ++       + P
Sbjct: 152 RLYIPKKLRNSCLSWL-----ESENRRSGYLFLNKFNEPITARGVAQQLKNYADKYKMNP 206

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                H+ RH FA + L+   D+  +  ++GH  + TT+IY    +    + + +I +
Sbjct: 207 KVIYPHSFRHLFAKNFLAKYNDIALLADLMGHESIETTRIYLRKTATEQQNIVDKIVN 264


>gi|123441204|ref|YP_001005191.1| integrase [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|122088165|emb|CAL10953.1| integrase [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 332

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 105/260 (40%), Gaps = 32/260 (12%)

Query: 52  FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTE 110
           +  + +++   I  ++   +  + S+R +  +   ++ R LS +       ++  +  +E
Sbjct: 87  YKIDREMSNPRIYMITRKFLMEYRSQRLSSGLSPATVNRDLSVLSGMFSTLIEAEEFHSE 146

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
           + I  +  L+  NS    L+E + + L+                    I  L    G R 
Sbjct: 147 NPICAVSKLRLKNSEMSFLSEDEIVDLL-----------SKATGDQRRIALLCLSTGARW 195

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
            EA +L  ++I+ ++ T  ++ K  KIR +P+   +   I        F+ + N    L 
Sbjct: 196 GEAKNLRGEHIVGNKVTF-VETKNGKIRSIPISDEMLTIIKTKKSGQLFNADYNEFRSLL 254

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
           + ++                     LP    +H LRH+FATH + NGG++ ++Q ILGH 
Sbjct: 255 KELKPD-------------------LPKGQASHALRHTFATHFMMNGGNIITLQRILGHS 295

Query: 291 RLSTTQIYTNVNSKNGGDWM 310
            +  T  Y +       D +
Sbjct: 296 NIQQTMNYAHFAPDFLQDAI 315


>gi|310658637|ref|YP_003936358.1| tyrosine recombinase xerd-like protein [Clostridium sticklandii DSM
           519]
 gi|308825415|emb|CBH21453.1| putative Tyrosine recombinase xerD-like protein [Clostridium
           sticklandii]
          Length = 293

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 57/278 (20%), Positives = 108/278 (38%), Gaps = 28/278 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             ++   L  +  +   T+ +Y  D + +L      T E + +  + ++    +  FIS+
Sbjct: 10  LDDYYLYLSKQ-NIKNNTVLAYYFDFKNYLE-----TSEPVELDNLFRVD--HLIEFISQ 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES-------NILNMRNLKKSNSLPRALN 130
                I + + KR L+ IK    YL +  I           N +N+   K   S    L+
Sbjct: 62  ---SSISESTKKRRLASIKKAYYYLIQNNIVANDIKFLSNLNSINIEK-KSIVSSDNILS 117

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           E++   L++            I  R+ AI+  +Y  GLR SE + L  ++I  + + + I
Sbjct: 118 EEEIDILLNT-------PNDSISLRDKAIIETIYTLGLRTSEIVELKVRDIDLNLNLISI 170

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
                  +   L   +  +++ Y +    +  L     LF     + L+     + I + 
Sbjct: 171 YR-NSIKKTFSLDSDINSSLINYLNYERLEFKLETN-YLFLNKNKEKLSRQSVWKIIAKY 228

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
                +        LR SFA HL+ NG  + ++  I G
Sbjct: 229 AENQNIETKVNPKILRKSFALHLIKNGVSINTVSEIFG 266


>gi|120537149|ref|YP_957206.1| phage integrase family protein [Marinobacter aquaeolei VT8]
 gi|120326984|gb|ABM21291.1| phage integrase family protein [Marinobacter aquaeolei VT8]
          Length = 409

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 60/296 (20%), Positives = 116/296 (39%), Gaps = 19/296 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q++ ++L   RG  + T++      R FL F+A         + +R L  T+I AF+  
Sbjct: 119 LQDFAEHLRQHRGNPEATIKKKLAHIRCFLAFIAARH------RPLRHLKLTDIDAFLVD 172

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPRALNEKQA 134
             +Q+    +     S ++ ++++L      T     ++           L RAL     
Sbjct: 173 C-SQRYARTTTADIGSSLRGYVRFLLVTGQVTADLAPSIVTPIVRHYEQPL-RALPWDDV 230

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGK 193
                  +L     +  I  R+ A+L L+   GL   E + LT  +I    +TLR+ + K
Sbjct: 231 R-----HILAAIDRSSPIGLRDYALLLLMSTYGLGAGEVIRLTLDDIDWQAATLRVVRPK 285

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV-FQRYIRQLRR 252
                ++PLLP++ +A+ +Y          +  +         PL+     +  +    R
Sbjct: 286 TGVAFVLPLLPALAQALADYLKHGRPRRAPSRHVFQSMRAPHYPLSESSAIRHILVGHAR 345

Query: 253 YLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
             G+  +   +H LRH+ A   +      + +  ILGH    +   Y  + ++   
Sbjct: 346 KAGVTAAYLGSHVLRHTHACRQVEQEISPKVLSDILGHRSPESLSAYVRIATERLR 401


>gi|94310184|ref|YP_583394.1| phage integrase [Cupriavidus metallidurans CH34]
 gi|93354036|gb|ABF08125.1| tyrosine-based site-specific recombinase [Cupriavidus metallidurans
           CH34]
          Length = 419

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 63/285 (22%), Positives = 115/285 (40%), Gaps = 17/285 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L  L  E+GL + + Q Y    R F  +L            +  L    I  F+ + R 
Sbjct: 131 FLPFLNDEKGLRQESQQRYLYTLRPFEAYLNR------GGIALSGLEPAHISRFLEE-RA 183

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALTLV 138
           + +    ++ +   ++ FL+YL +  I     + ++   +  +  S+PRA+  +    L+
Sbjct: 184 KTLHKAGMRDTAGALRIFLRYLHREGIVATDLVRSVPRGRIYRQASIPRAIGWQDVERLL 243

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197
            ++          +  R+ AIL LL   GLR  E  +L   +     + + I   KG   
Sbjct: 244 TSI-----DRRSILGKRDYAILTLLASYGLRAREIAALCLDDFDWTHAQISIPMRKGGHS 298

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
              PL  +V  A++ Y      D+  + Q+ L       P+        +    R +G+ 
Sbjct: 299 TRYPLSATVGDAVISYLQARRSDV-PHRQVFLTARSPYIPMRHWTVSAMVGIRMRDIGIQ 357

Query: 258 L-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +    +HTLRH+   HL+      + I   +GH   S+T +Y  V
Sbjct: 358 VTRAGSHTLRHACVQHLVEADMPFKVIGDYVGHSHPSSTLVYGKV 402


>gi|332361209|gb|EGJ39013.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK1056]
          Length = 356

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 111/326 (34%), Gaps = 45/326 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  +  +F  ++            +I +  +  ++  ++ AFI   R +   
Sbjct: 33  YSFTTLYEYLKEYDRFFNWVLESGITDASHIAEIPLSVLENMTKKDMEAFILYLRERPLL 92

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                   +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 93  NANTTQNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATKKKKETLAA 152

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA--------RNSAILYLLYGCGLRIS 171
           +  N   +     +    +  +      +              R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETEEFLQYIDTEYPKKLSNRALSSFNKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLF 230
           EA++L  ++I      + +  KG K   V +    +  + EY ++              F
Sbjct: 213 EAVNLDLKDINLKMMVIEVTRKGGKRDSVNVAAFAKPYLEEYLNIRSKRYKAEKTDTAFF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +        +  T H LRH+ AT L         +   L
Sbjct: 273 LTEYRGTPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH     T +YT++ +    + + ++
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNALDKL 356


>gi|320449554|ref|YP_004201650.1| DNA integration/recombination/inversion protein [Thermus
           scotoductus SA-01]
 gi|320149724|gb|ADW21102.1| DNA integration/recombination/inversion protein [Thermus
           scotoductus SA-01]
          Length = 391

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 67/325 (20%), Positives = 131/325 (40%), Gaps = 29/325 (8%)

Query: 9   IVSFELLKERQNWLQNLEI-ER-GLSKLTLQSYECDTRQFLIFLAFYT-EEKITIQTIRQ 65
           ++S   L  R+  L+ L   ER G+   TL+    +    L  L      + +    +++
Sbjct: 63  LLSPTRLTLREFALEYLRRKEREGVRPNTLRLLRLELGLALPSLRDPGLPDPLGRMPLQR 122

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNS 124
           +   +IR  +      +   R++++ L  +K+  +     ++   +    +R  L++   
Sbjct: 123 VGPAQIRGVVDGL-VGRYAPRTVRKVLGHLKALFREAVHLELVPRNPAEGVRLRLREEEK 181

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           + RAL  ++ + L++      S E   +              GLR  EAL+L  +++  D
Sbjct: 182 VARALEPEEVIRLLEEAERGRSREMALLLWLLL-------STGLRRGEALALQWRDLDLD 234

Query: 185 QSTLRIQGKGDKI---------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
           +  +R+     K+               R+VPL   +   +  Y +     L       L
Sbjct: 235 RGEVRVWRAWTKVDGRGAFTTPKTSTARRVVPLPRDLLLRLRAYKEEFLAKLAPEEVEEL 294

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F     +P +P  F  Y+R+L    GL      H LRH++AT  LS G  L  +   LGH
Sbjct: 295 FLFGGDRPFDPDAFNHYLRRLAERAGLGR-VRVHDLRHTWATLALSRGVPLEVVSERLGH 353

Query: 290 FRLSTT-QIYTNVNSKNGGDWMMEI 313
              + T  +Y ++  +    +++E+
Sbjct: 354 ASPTITLNVYRHLLEEERRGYVLEL 378


>gi|218848070|ref|YP_002454723.1| integrase-recombinase [Bacillus cereus G9842]
 gi|218546201|gb|ACK98594.1| integrase-recombinase [Bacillus cereus G9842]
          Length = 381

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 74/327 (22%), Positives = 120/327 (36%), Gaps = 37/327 (11%)

Query: 20  NWLQN---LEIERGLSKLTLQSYECDTRQFLIFLAF--------YTEEKITIQTIRQLSY 68
           +++ +   ++ ++     T +SY  +   F   L          Y E K     ++ L  
Sbjct: 60  HFIHHSTNIDKDKQRKNNTRKSYLREIMHFCKTLTEKAETFEISYEEIKKENSFLKALKP 119

Query: 69  TEIRAFISK-------RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN--L 119
             IR F          R  +     +L R L+ I SFL +L K    +     +++   +
Sbjct: 120 WNIRKFNDWIKSVPYGRNNKPYSVATLARKLTIINSFLSHLYKNNYISIPLHEHLKKATV 179

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           + ++   R L   +   +++                N  I+ LL   GLRI E  S    
Sbjct: 180 QVNDRPNRDLYYDEVQEILNYY-------KSKKQLFNYMIILLLVSTGLRIQEVASAKIG 232

Query: 180 NIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRG 235
           ++   +    LR+ GKGDK R   + P + + I EY         LN     PL      
Sbjct: 233 DLFRAEGKLWLRVIGKGDKPREAYISPHLFECISEYRSRKGLKTQLNRLDNSPLIVSNHL 292

Query: 236 KPLNPGVFQRYIRQLRRYLGLPL------STTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           +  N       +  +     +P         TAHT RH FA     N  +L  IQ  LGH
Sbjct: 293 RKFNSTYLSNKVTSILSQARIPCVEQRENPITAHTFRHGFAIMAAENDVELLRIQQTLGH 352

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
              +TT+IY   + K   +  +   DQ
Sbjct: 353 ASANTTKIYLEKHMKRKHNAALSFADQ 379


>gi|319788899|ref|YP_004090214.1| integrase family protein [Ruminococcus albus 7]
 gi|315450766|gb|ADU24328.1| integrase family protein [Ruminococcus albus 7]
          Length = 268

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 101/285 (35%), Gaps = 34/285 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            LS  T++ Y    + F                   ++   + A+      +    +++ 
Sbjct: 14  NLSANTIEVYLWTVKYFEEHYDG-------------ITKENLLAYKGYLM-ENFKPKTVN 59

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             +  +  +L YL K         L ++ +K        L  +  ++  D   L  S + 
Sbjct: 60  LRIQAMNKYLVYLGKE-------SLRIKAVKVQQK--NFL--ENVISNADYKFLKKSLKK 108

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
             I      +++ L   G R+SE + +  +++  +     +  KG K+R + +   +R  
Sbjct: 109 DGIMEW-YFVVWYLCATGARVSELIRIKIEHV--ETGYFDLYSKGGKLRRLYIPKKLRNE 165

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHS 268
            LE+               LF    G+ +      + ++      GL       H+ RH 
Sbjct: 166 TLEWLKT-----QERTSGYLFLNRFGERITARGISQQLKNYAEKYGLDKKVVYPHSFRHR 220

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +A + L    D+  +  ++GH  + TT+IY    +      + +I
Sbjct: 221 YAKNFLEKYNDIALLADLMGHESIETTRIYLRKTASEQQAIVDKI 265


>gi|159038058|ref|YP_001537311.1| integrase family protein [Salinispora arenicola CNS-205]
 gi|157916893|gb|ABV98320.1| integrase family protein [Salinispora arenicola CNS-205]
          Length = 330

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 67/331 (20%), Positives = 115/331 (34%), Gaps = 44/331 (13%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY--TEEKITIQTIRQLSYTEI 71
           +++  + +L +    R  S  T+Q+Y  D R      A        +    +  L    +
Sbjct: 9   VVRLIEEFLTD-RATRKPSPHTVQAYRRDLRTVASIAADEASPPLPLDALPLEALRPRVL 67

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL-- 129
           R+  +     +    S+ R+ S   SF  +L    +   + +  +   +     P+ L  
Sbjct: 68  RSAFAHFAATR-SAASVHRAWSTWNSFFVFLVADGVVAGNPMPAVGRPRAPLPRPKPLRG 126

Query: 130 --NEKQALTLVDNVLLHTSHETKWIDARNSAILY-------------LLYGCGLRISEAL 174
               +Q LT V              D    A+               +    G R  E  
Sbjct: 127 ADTPEQLLTAVARADGRQRDPWPQRDLAVLALALCAGLRLAELLALRVASLAG-RAGE-- 183

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFR 231
                        + + GKG + R+VP+ P + + + +Y D C          P   L  
Sbjct: 184 -----------RRIDVAGKGGRPRVVPVEPELDQVLADYLDSCRRRFGSRCVRPDASLLM 232

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA----HTLRHSFATHLLSNGGDLRSIQSIL 287
             RG+PL  G  Q  +    R  G+          H LRH+FAT L  +G     I  +L
Sbjct: 233 DRRGEPLRRGGLQYLVDSCFRRAGIGDRVPPGARLHALRHTFATRLAEDGASAAEIMRLL 292

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           GH  L+++Q Y  V +      +    ++TH
Sbjct: 293 GHVSLASSQAYIEVTAGQQRAAVRS--NRTH 321


>gi|161525451|ref|YP_001580463.1| integrase domain-containing protein [Burkholderia multivorans ATCC
           17616]
 gi|160342880|gb|ABX15966.1| integrase domain protein SAM domain protein [Burkholderia
           multivorans ATCC 17616]
          Length = 289

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 86/200 (43%), Gaps = 11/200 (5%)

Query: 13  ELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           +L      +L ++L  ER  S+ T ++Y    +  + F A   + K +  T+ Q+  + I
Sbjct: 3   DLATHLSGFLREHLPAERNASQHTCEAYAYSFQLLVEFAAGRLKCKPSQLTLDQIDASMI 62

Query: 72  RAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPR 127
             F+      +    R+    L+ IKSF +YL+ R          +  +   K    L  
Sbjct: 63  MTFLEHIEAKRGNCARTRNARLAAIKSFFRYLEYRLPAYLDQSRQIHAIPMKKTDQMLID 122

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-S 186
            L  ++   L+D     +         R+ A+L+L Y CGLR++E +SL          +
Sbjct: 123 YLTREELKALLD-----SPDPHSQSGIRDRAMLHLAYACGLRVAELVSLRLDQFDPRTPA 177

Query: 187 TLRIQGKGDKIRIVPLLPSV 206
           T+ I GKG + R++PL    
Sbjct: 178 TIHIVGKGRRERVLPLWKEA 197


>gi|104782062|ref|YP_608560.1| phage integrase family site specific recombinase [Pseudomonas
           entomophila L48]
 gi|95111049|emb|CAK15769.1| putative site-specific recombinase, phage integrase family
           [Pseudomonas entomophila L48]
          Length = 304

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 60/287 (20%), Positives = 111/287 (38%), Gaps = 19/287 (6%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           LQ L      S+LT++    D    L F+       I       L    + A ++  RT 
Sbjct: 10  LQYLARLAPSSQLTMRYILQDAADRLGFVDC----DIADVPWHHLEPGHVIALVAALRTD 65

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLP--RALNEKQALTL 137
                +    ++ ++  +    ++ +    ++L +R +K    + LP  R L       L
Sbjct: 66  GYAPNTSSLYVNAVRGVMNEAWRQGLVEHEHLLKIREIKPASGSRLPAGRNLRRSLIREL 125

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +D      + + +    R++AIL LLYG G+R SE++ +    +  D+ ++++ GKG++ 
Sbjct: 126 MDVC----AADPRPQGVRDAAILALLYGTGMRKSESVDVNLDQVDFDERSVQVLGKGNRE 181

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNP-GVFQRYIRQLRRY 253
            I          +  + DL    L        F   R  RG  +    + +  I  + R 
Sbjct: 182 LIKYAPGWAFDKLQAWLDLRRQHLPAGECDDAFLFNRIRRGSHITRARITKHAIYYIARQ 241

Query: 254 --LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
               +      H  R +F T ++    DL   Q +  H  + TT  Y
Sbjct: 242 RGAQVGAKIMPHDFRRAFITRVIEE-HDLSIAQKLAHHANIQTTAGY 287


>gi|94969096|ref|YP_591144.1| phage integrase [Candidatus Koribacter versatilis Ellin345]
 gi|94551146|gb|ABF41070.1| phage integrase [Candidatus Koribacter versatilis Ellin345]
          Length = 359

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 52/291 (17%), Positives = 103/291 (35%), Gaps = 32/291 (10%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + L  +R  ++LT   YE +       +  +  +      +  +   +I  F++KR  + 
Sbjct: 80  RFLLHQR--ARLTKAGYERE----RGVVETHLHDYFGQMQLALIRRGDIANFVTKRAAE- 132

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +   ++ + L  +K   +   + ++   +    ++  K +    R L  ++   L+    
Sbjct: 133 VSPATVAKELVTLKHLFRLCVEWELLVLNPATGVKAPKVAPGRVRWLQPEELRALLQAC- 191

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI-RIVP 201
                           I  L    G+R SE L +   ++      L ++   +   RIV 
Sbjct: 192 ----------PDWLRPIAGLAAATGMRRSEVLGVRWFDVDRRNGCLTLRQTKNNESRIVF 241

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           L  S    I                  LF       + P        +  R LG+     
Sbjct: 242 LNQSALHVI-------DSLRKGKSSEKLFP-----KVTPEQVSMGFLRTCRELGIE-DFR 288

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            H LRH FA+ L  +G DL+ +  +LGH  L  T+ Y++++  +       
Sbjct: 289 WHDLRHCFASLLRQSGADLQDVAELLGHKDLRMTKRYSHLSPAHLSAAARR 339


>gi|118581964|ref|YP_903214.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
 gi|118504674|gb|ABL01157.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
          Length = 402

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 109/260 (41%), Gaps = 14/260 (5%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           ++ ++  ++ A +  +  ++    +    L+ +K  L    K  +  ++        K+ 
Sbjct: 151 LQAITPRDV-AMVHSKEKERTTACTANHLLATLKRMLNLAVKWGLLEKNPAGGQEKFKEG 209

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
               R L++++    +  +           D  + A L +L   G R  E +SL  +N+ 
Sbjct: 210 PLRERYLSKEELPKFLKAL-------EDQDDLLSVAALRMLLYTGCRREEIMSLRWENVR 262

Query: 183 DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
            D+  + + + K  + R V L    ++ I +       +        +F   +G      
Sbjct: 263 LDEERIFLPKTKNGRSRTVHLNARAKEVIQDLQARKDQEDRTRGSEYVFPSRQGTKKGYI 322

Query: 242 V-FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              ++   +     G+  +   H LRH+FA+  +S+G DL ++Q +LGH  ++ TQ Y +
Sbjct: 323 YDLRKPFEKACLNAGID-NFRIHDLRHTFASMAVSSGADLYAVQRLLGHQDIAMTQRYAH 381

Query: 301 VNS---KNGGDWMMEIYDQT 317
           +N+   K   + + E++D+ 
Sbjct: 382 LNADDLKKATEGVSEMFDRA 401


>gi|69244690|ref|ZP_00602954.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus
           faecium DO]
 gi|257879459|ref|ZP_05659112.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257881742|ref|ZP_05661395.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257890218|ref|ZP_05669871.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|260558834|ref|ZP_05831023.1| phage integrase [Enterococcus faecium C68]
 gi|293560447|ref|ZP_06676939.1| integrase [Enterococcus faecium E1162]
 gi|294621631|ref|ZP_06700796.1| integrase [Enterococcus faecium U0317]
 gi|314937844|ref|ZP_07845160.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|314941335|ref|ZP_07848228.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|314950094|ref|ZP_07853380.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
 gi|314953752|ref|ZP_07856621.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
 gi|314992804|ref|ZP_07858205.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|314997963|ref|ZP_07862859.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|68196281|gb|EAN10710.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus
           faecium DO]
 gi|257813687|gb|EEV42445.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257817400|gb|EEV44728.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257826578|gb|EEV53204.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|260075293|gb|EEW63606.1| phage integrase [Enterococcus faecium C68]
 gi|291598796|gb|EFF29848.1| integrase [Enterococcus faecium U0317]
 gi|291605595|gb|EFF35037.1| integrase [Enterococcus faecium E1162]
 gi|313588024|gb|EFR66869.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|313592608|gb|EFR71453.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|313594271|gb|EFR73116.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
 gi|313599758|gb|EFR78601.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|313642702|gb|EFS07282.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|313643535|gb|EFS08115.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
          Length = 379

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 57/327 (17%), Positives = 122/327 (37%), Gaps = 41/327 (12%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L    ++W+Q L  E  +S +T + YE        ++            I  L     + 
Sbjct: 62  LSDYFEDWMQ-LYKEGTVSPITYRKYEDTLMNIKKYMPAVL--------ISDLDRVGYQR 112

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP----RAL 129
           F++K     +   ++ +  + I++ LK   +  +           +K  +SL     + L
Sbjct: 113 FLNKYAKDHVK-STVIKFNNHIRASLKDAVEEGLIPFDPTRKAV-IKGKDSLKPKEDKYL 170

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  Q  +L+  V  + S +          ++ +    G+R +E L LT ++I  +   + 
Sbjct: 171 DYDQFKSLMKLVEENLSAQYSSPM-----LVLVAGATGMRFAELLGLTWEDIDFEDQIIT 225

Query: 190 IQGKGDKI-------------RIVPLLPSVRKAILEYYDLCPFDLN----LNIQLPLFRG 232
           I    +               R + +       + ++              N    +F  
Sbjct: 226 INKTWNYKLNEWGKTKNETSNRKISIDKHTIDLLKKFKINQKELFENFEIKNPHNFVFFN 285

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           ++   ++     +Y+R+  + LG+    T H LRH+ A+ LL  G ++ S+   LGH  L
Sbjct: 286 LKNGLVSSNAVSKYLRKKLKELGIEKQFTLHGLRHTHASILLYQGVNILSVSKRLGHSSL 345

Query: 293 STTQ-IYTNVNSK---NGGDWMMEIYD 315
            TT   Y ++  +      + +  ++D
Sbjct: 346 ETTMSTYLHIVRELEDQDKEKINTVFD 372


>gi|15902491|ref|NP_358041.1| integrase/recombinase [Streptococcus pneumoniae R6]
 gi|116515761|ref|YP_815960.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae D39]
 gi|15458015|gb|AAK99251.1| Integrase/recombinase [Streptococcus pneumoniae R6]
 gi|116076337|gb|ABJ54057.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae D39]
          Length = 265

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 116/298 (38%), Gaps = 36/298 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++  +L+   GL++ T++SY    R FL       E+             E + ++   
Sbjct: 2   KDFELHLKKA-GLAENTVRSYLYGVRFFLENYKLKMEDLF-----------EYKGYLLD- 48

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  +++   L G+  +L ++    +        ++ +K        L  +  ++  
Sbjct: 49  ---NFKPKTVNLRLQGVNKYLAFIGHDDL-------KLKFVKVQQKP--FL--EDVISHA 94

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D + L  S +   I      +++ L   G R+SE + L  +++  +     I  KG KIR
Sbjct: 95  DYLFLKRSLKKDGILKW-HFVVWFLGATGARVSELIKLKVEHV--EIGYFDIYSKGGKIR 151

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-P 257
            + +   +R + L +      +        LF     +P+      + ++       + P
Sbjct: 152 RLYIPKKLRNSCLSWL-----ESENRRSGYLFLNKFNEPITARGVAQQLKNYADKYKMNP 206

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                H+ RH FA + L+   D+  +  ++GH  + TT+IY    +    + + +I +
Sbjct: 207 KVIYPHSFRHLFAKNFLAKYNDIALLADLMGHESIETTRIYLRKTATEQQNIVDKIVN 264


>gi|325297661|ref|YP_004257578.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317214|gb|ADY35105.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 432

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 103/261 (39%), Gaps = 33/261 (12%)

Query: 62  TIRQLSYTEIRAFISKR------RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           T+ Q+     + +I         R +++ + +LK     + S L    + ++   +    
Sbjct: 185 TLDQIDKAFCQGYIDYLMMEYRPRGKRVSNFTLKNYYRVLNSALNAAVRAELMRSNPFDK 244

Query: 116 MRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           +     ++   S    +  ++   L+   + +   +  ++ +           CGLRIS+
Sbjct: 245 IDKSDKIRLPESKRSYMTIEEVKALIATPMKYEEIKCAYLFSC---------FCGLRISD 295

Query: 173 ALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
              L  +++  D+   R+     K  +   +PL     K + E  D  P DL  ++    
Sbjct: 296 VKRLQWKDVFIDKGQYRLAVSMKKTKEPIYLPLSSEALKWMPERGDKTPDDLVFDLP--- 352

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
                    +     R ++   +  G+    + HT RH+FAT +L+ G DL +   +LGH
Sbjct: 353 ---------SGNEINRLLKPWAKAAGINKRFSFHTSRHTFATMMLTLGADLYTTSKLLGH 403

Query: 290 FRLSTTQIYTNVNSKNGGDWM 310
             +  TQ+Y  + +K   + +
Sbjct: 404 ADVKMTQVYAKIINKKKDEAV 424


>gi|298483404|ref|ZP_07001581.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           D22]
 gi|299148890|ref|ZP_07041952.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           3_1_23]
 gi|298270352|gb|EFI11936.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           D22]
 gi|298513651|gb|EFI37538.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           3_1_23]
          Length = 267

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 106/287 (36%), Gaps = 34/287 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            L+K T+ SY    + FL                 +++   + A+      +    +++ 
Sbjct: 13  NLAKNTVTSYVWTVQYFLNHYG-------------EVNKKNLLAYKGYL-VENFKPQTVN 58

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             L GI  +L++ K+ K+        ++ +K        L  +  ++  D   L    + 
Sbjct: 59  LRLQGINKYLEFTKQEKL-------KVKFVKVQQK--NFL--ENVISDADYKFLKAQLKA 107

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              +     I++ +   G R+SE L +  ++I      L +  KG K+R + +  ++R  
Sbjct: 108 DGYEEW-YFIVWFMTATGARVSELLHIKAEHINV--GYLDLYSKGGKVRRLYIPKNLRTE 164

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHS 268
             ++               +F    G+ +        ++      G+       H+ RH 
Sbjct: 165 AEKWLKNQGL-----TSGYIFLNRFGQRITTRGIASQLKHFAEKYGMNKEVVYPHSFRHR 219

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           FA + L    DL  +  ++GH  + TT+IY    +      + ++ +
Sbjct: 220 FAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDKVVN 266


>gi|323484526|ref|ZP_08089891.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
 gi|323694853|ref|ZP_08109006.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
 gi|323402104|gb|EGA94437.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
 gi|323501079|gb|EGB16988.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
          Length = 283

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 107/298 (35%), Gaps = 40/298 (13%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +   L  E   S  T+  Y  D ++FL + A            R ++   +  +  + + 
Sbjct: 17  YYHYLIGEE-KSPTTITKYLRDLQKFLTYTAG-----------RPITKELVITYKEELKQ 64

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP----RALNEKQALT 136
           Q     S+   L+ +  +  +    +         ++ +K+   +     + L++++   
Sbjct: 65  Q-YATASINSMLASLNHYFDFAGLYE-------CKVKQIKQQRRVYCPEEKELSKEEYYR 116

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+                    I+  +   G+RISE   +T +      + +  +GK   
Sbjct: 117 LIKAAQELQKDRLS-------LIIQTICSTGIRISELECITVRAAQSGVAEVNCKGKS-- 167

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R + +   ++  +L Y            Q P+F   +G P+N     R ++ L     +
Sbjct: 168 -RQIFIPHKLKMMLLTYIKKQHIR-----QGPIFITKQGNPINRSNVWREMKNLCEIAHV 221

Query: 257 -PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                  H LRH FA        D+  +  +LGH  ++TT+IY   + +     +  +
Sbjct: 222 RENKVFPHNLRHLFAKTYYKMEKDISKLADLLGHSSINTTRIYIISSGEEHRRQIDRM 279


>gi|160937772|ref|ZP_02085131.1| hypothetical protein CLOBOL_02664 [Clostridium bolteae ATCC
           BAA-613]
 gi|288870075|ref|ZP_06409618.1| transposase [Clostridium hathewayi DSM 13479]
 gi|158439211|gb|EDP16964.1| hypothetical protein CLOBOL_02664 [Clostridium bolteae ATCC
           BAA-613]
 gi|288868522|gb|EFD00821.1| transposase [Clostridium hathewayi DSM 13479]
          Length = 408

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 110/296 (37%), Gaps = 34/296 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +   +E+KI   +I  +  ++ + +  + + + +   ++      +K+      +     
Sbjct: 98  MKLLSEDKIGGASIDSVKLSDAKEWALRMQEKGVAYHTICNGKRSLKAIFHMAVQDDCLR 157

Query: 110 ESNI-LNMRNLKKSNSLPRA-LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     +  +   +++P+  L   Q   L+  +      ++  + A+    + +L   G
Sbjct: 158 KNPFDFQINEVINDDTVPKVPLTPAQEKELLGFM------QSDPVYAKYYDEVLILLETG 211

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAIL 211
           LR+SE   LTP ++  D+  + +                       R VP+  +  KA  
Sbjct: 212 LRVSELCGLTPADLNFDKRFVNVDHQLLRSTEDGYYIEAPKTDSGYRQVPMSAAAYKAFQ 271

Query: 212 EYYDLCPFDLNL---NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTA 262
                      +     +  LF    G P     +    + L +         LP   T 
Sbjct: 272 RVLHRRKDGKGVVVDGYKGFLFLNRDGLPKAAVNYDSMFQGLAKKFNKFHAEPLPEVMTP 331

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQT 317
           HT+RH+F T + + G + +++Q I+GH  +  T   Y +    +  + M  +  ++
Sbjct: 332 HTMRHTFCTRMANAGMNPKALQYIMGHSNIVMTLNYYAHATFHSAQEEMERLQAKS 387


>gi|332366899|gb|EGJ44640.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK1059]
          Length = 357

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 110/326 (33%), Gaps = 45/326 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  +  +F  ++            +I +  +  ++  ++ AFI   R +   
Sbjct: 34  YSFTTLYEYLKEYDRFFNWVLESGITDASQIAEIPLSVLENMTKKDMEAFILYLRERPLL 93

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                   +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 94  NANTTQNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATKKKKETLAA 153

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA--------RNSAILYLLYGCGLRIS 171
           +  N   +     +    +  +      +              R+ AI+ LL   G+R+S
Sbjct: 154 RAENIKQKLFLGDETEEFLQYIDTEYPKKLSNRALSSFNKNKERDLAIIALLLASGVRLS 213

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLF 230
           EA++L  ++I      + +  KG K   V +    +  + EY  +              F
Sbjct: 214 EAVNLDLKDINLKMMVIEVTRKGGKRDSVNVAAFAKPYLEEYLSIRSKRYKAEKTDTAFF 273

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +        +  T H LRH+ AT L         +   L
Sbjct: 274 LTEYRGTPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQL 331

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH     T +YT++ +    + + ++
Sbjct: 332 GHASTQVTDLYTHIVNDEQKNALDKL 357


>gi|323487455|ref|ZP_08092750.1| hypothetical protein HMPREF9474_04501 [Clostridium symbiosum
           WAL-14163]
 gi|323399224|gb|EGA91627.1| hypothetical protein HMPREF9474_04501 [Clostridium symbiosum
           WAL-14163]
          Length = 418

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 118/327 (36%), Gaps = 41/327 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q + + +     + + T +S      + L       E+K+   +I  +  ++ + +  + 
Sbjct: 91  QLYAKYIRQRGNVKRGTQKS-RQQLMKLLE------EDKLGAASIDSVKLSDAKEWALRM 143

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLKKSNSLPRA-LNEKQALT 136
           + + +   ++  S   +K+      +     ++     +  +   ++ P+  L   Q   
Sbjct: 144 QEKGVAYTTICNSKRSLKAIFYMAIQDDYLRKNPFDFQINEVINDDTEPKVPLTPAQEKE 203

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI------ 190
           L+  +      +T +    +  ++  L   GLRISE   LTP ++  ++  + +      
Sbjct: 204 LLKFI----QDDTIYSKYYDEVVI--LLETGLRISELCGLTPADLNFEKRFIHVDHQLLR 257

Query: 191 ----------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKP 237
                            R VP+  +  +A             + +      LF    G P
Sbjct: 258 STEDGYYIETPKTDSGFRQVPMSAAAYEAFQRVLKNRRGGKAIQVDGYSNFLFLNRDGLP 317

Query: 238 LNPGVFQRYIRQLRRYLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
                +    + L +         LP   T HT+RH+F T + + G + +++Q I+GH  
Sbjct: 318 KVAVHYDAMFKCLAKKFNKCHKEPLPSVMTPHTMRHTFCTRMANAGMNPKALQYIMGHSN 377

Query: 292 LSTT-QIYTNVNSKNGGDWMMEIYDQT 317
           +  T   Y +    +  + M  +  +T
Sbjct: 378 IIMTLNYYAHATFHSAQEEMDRLEAKT 404


>gi|315607651|ref|ZP_07882646.1| integrase [Prevotella buccae ATCC 33574]
 gi|315250834|gb|EFU30828.1| integrase [Prevotella buccae ATCC 33574]
          Length = 435

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 58/294 (19%), Positives = 106/294 (36%), Gaps = 23/294 (7%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           R    F+     + I I  I +  + E R ++ KR    +   ++   L  +   +    
Sbjct: 136 RNLHEFVKDKGVQDILIGAITEDLFEEYRFYLKKR---GLKGTTINNYLCWLSRLMYRAV 192

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
            + I   +   N +  K+  ++ R L +     L+   +  +  E          +    
Sbjct: 193 SQNIIRCNPFENAKYEKEDKNI-RYLQKYDVARLMAMRMNDSEAEQA------RLMFIFS 245

Query: 164 YGCGLRISEALSLTPQNIM---DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
              GL I++  +L  ++I    D Q  +R  + K     +VPL P     I         
Sbjct: 246 CFTGLAIADMETLQYKHIQTAADGQKYIRKERQKTKVEFVVPLHPIAETIISHCRKANHN 305

Query: 220 DLNLNIQLPLFRGI-----RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           DL         +               V    +  + +  G+    + H  RH+F T  L
Sbjct: 306 DLTTGQDEQTMKEKDGDFVFHPDCTRSVMSAKLCIVGKACGISQRLSFHMARHTFGTMSL 365

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           S G  + SI  ++GH  +S+TQIY  V      + M  +  +    ++ K+KKN
Sbjct: 366 SAGIPIESIAKMMGHASISSTQIYAQVTDCKISEDMDRLIAK----LSSKEKKN 415


>gi|149012614|ref|ZP_01833611.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP19-BS75]
 gi|168490598|ref|ZP_02714741.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC0288-04]
 gi|168492610|ref|ZP_02716753.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC0288-04]
 gi|237650525|ref|ZP_04524777.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae CCRI 1974]
 gi|237822121|ref|ZP_04597966.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae CCRI 1974M2]
 gi|147763419|gb|EDK70356.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP19-BS75]
 gi|183573243|gb|EDT93771.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC0288-04]
 gi|183574901|gb|EDT95429.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC0288-04]
 gi|332076344|gb|EGI86807.1| phage integrase family protein [Streptococcus pneumoniae GA41301]
 gi|332202399|gb|EGJ16468.1| phage integrase family protein [Streptococcus pneumoniae GA41317]
          Length = 265

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 115/298 (38%), Gaps = 36/298 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++  +L+   GL++ T++SY    R FL                 +L   ++  +    
Sbjct: 2   KDFELHLKKA-GLAENTVRSYLYGVRFFLENY--------------ELKMEDLFEYKGYL 46

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  +++   L G+  +L ++    +        ++ +K        L  +  ++  
Sbjct: 47  LDN-FKPKTVNLRLQGVNKYLTFIGHDDL-------KLKFVKVQQKP--FL--EDVISHA 94

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D + L  S +   I      +++ L   G R+SE + L  +++  +     I  KG KIR
Sbjct: 95  DYLFLKRSLKKDGILKW-HFVVWFLGATGARVSELIKLKVEHV--EIGYFDIYSKGGKIR 151

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-P 257
            + +   +R + L +      +        LF     +P+      + ++       + P
Sbjct: 152 RLYIPKKLRNSCLSWL-----ESENRRSGYLFLNKFNEPITARGVAQQLKNYADKYKMNP 206

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                H+ RH FA + L+   D+  +  ++GH  + TT+IY    +    + + +I +
Sbjct: 207 KVIYPHSFRHLFAKNFLAKYNDIALLADLMGHESIETTRIYLRKTATEQQNIVDKIVN 264


>gi|150401949|ref|YP_001329243.1| phage integrase family protein [Methanococcus maripaludis C7]
 gi|150032979|gb|ABR65092.1| phage integrase family protein [Methanococcus maripaludis C7]
          Length = 324

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 70/314 (22%), Positives = 133/314 (42%), Gaps = 25/314 (7%)

Query: 16  KERQNWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +E+  ++     ER    +   T+++   D     +FLAF  + K    T+    +    
Sbjct: 21  EEQNKYIMKFREEREFDNIKPSTIKN---DITSLKVFLAFCEDAKKEPYTLSTHDFVIFF 77

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLK---YLKKRKITTESNILNMRNLKKSNSLPRAL 129
             ++ RR   +  R+  R  + +K F +   Y   ++   ES I   R  K        +
Sbjct: 78  NMLNNRRNCTV--RTQNRYFNLLKVFYRLLKYDNFKEFERES-IERKRFSKFEKKHYDTI 134

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           N      ++  ++L  S        R++ I+ +L+  G R SEALS+  ++   ++   R
Sbjct: 135 NFDTYNRIIKEIILSNSRTR----LRDALIVRVLWETGCRRSEALSIRYKDCDFEKGRFR 190

Query: 190 IQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLN--PGVFQ 244
           I+  K  + R V +     + + +Y        + +   Q  + +  +   L+    VF+
Sbjct: 191 IRDTKTYEERTVVIAEETVEIVRDYIKENIRRDSNDYIFQNEMIQNGKRVKLDWITNVFK 250

Query: 245 RYIRQLRRYLGLP--LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           + +R+L+    +P       H+LRH  AT LL  G  +  ++ ILGH  L TT  Y++  
Sbjct: 251 KAVRKLKEEGVIPEGKRIVIHSLRHGRATDLLDKGVPIDVVKEILGHRSLETTLYYSH-- 308

Query: 303 SKNGGDWMMEIYDQ 316
           SK   D M++   +
Sbjct: 309 SKERKDGMLDNIQK 322


>gi|325270645|ref|ZP_08137243.1| integrase [Prevotella multiformis DSM 16608]
 gi|324987040|gb|EGC19025.1| integrase [Prevotella multiformis DSM 16608]
          Length = 447

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 66/319 (20%), Positives = 129/319 (40%), Gaps = 31/319 (9%)

Query: 14  LLKERQNWL----QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLS 67
           LL+    +L    + + I+R L    L++Y+      L  L  Y ++K  +  I   QL 
Sbjct: 151 LLESFSEYLTQTKERIGIDRELKTFKLRTYQ------LSLLHEYVQKKHRVSDIPLSQLD 204

Query: 68  YTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
            + I  F       +K+   S+  +LS +++ ++   K+ +          + ++    P
Sbjct: 205 KSFIEGFEYYLTIDRKLKRSSISSALSTLQTIVRMAVKKGVPDFYPFFGY-SYERPKGEP 263

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R + + +   ++D   L    E   I      +       GL IS+  +L  +NI+ ++ 
Sbjct: 264 RCITQDELQKIID---LEIEWENYRIV---RDLFVFSCFTGLAISDVRNLREENIVLEEG 317

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            L I+G+  K +    +  +  A+                +P             +    
Sbjct: 318 ELCIKGRRMKTKTPYRVQVLPPALTIMNRYRGIRAGFVFDVP----------TIDIVLNG 367

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +  ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQ+Y  V+S+ 
Sbjct: 368 MHYIQRNIGMGTPLTFHMARHTFASIITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSER 427

Query: 306 GGDWMMEIYDQTHPSITQK 324
               M  I  +   + T K
Sbjct: 428 IHRDMQAIQQRIQDTFTLK 446


>gi|309803092|ref|ZP_07697189.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 11V1-d]
 gi|308164600|gb|EFO66850.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 11V1-d]
          Length = 405

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 109/295 (36%), Gaps = 35/295 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +    ++KI +++I  +  ++ + +  +        +++      +K+      +     
Sbjct: 110 MDILKKDKIGVRSIDSIKPSDAKEWAIRMSENGYAYQTINNYKRSLKASFYIAIQDDCVR 169

Query: 110 ESNI-LNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     ++ +   +++P+  L E+Q   L+         +     ++N   + +L   G
Sbjct: 170 KNPFDFQLKAVLDDDTVPKTVLTEEQEEKLL------AFAKADKTYSKNYDEILILLKTG 223

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAIL 211
           LRISE   LT  ++  +   + I                       R VP++    +A  
Sbjct: 224 LRISEFGGLTLPDLDFENRLVNIDHQLLRDTEIGYYIETPKTKSGERQVPMVEEAYQAFK 283

Query: 212 EYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTA 262
                   D  + I      LF   +  P     +   ++ + +         LP   T 
Sbjct: 284 RVLANRKNDKRVEIDGYSDFLFLNRKNYPKVASDYNGMMKGIVKKYNKYNEDKLP-HITP 342

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQ 316
           H+LRH+F T+  + G + +++Q I+GH  ++ T   Y +    +    M  +  +
Sbjct: 343 HSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMKRLNKE 397


>gi|88812879|ref|ZP_01128123.1| Integron integrase [Nitrococcus mobilis Nb-231]
 gi|88789801|gb|EAR20924.1| Integron integrase [Nitrococcus mobilis Nb-231]
          Length = 194

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 79/182 (43%), Gaps = 37/182 (20%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAI------- 210
           +  LLYG GLR+ E + L  +++  D+  + ++  KG + R+  L  S+R ++       
Sbjct: 1   MASLLYGAGLRLLECVRLRVKDVELDRRQIVVRDRKGGRDRVTLLPESMRPSLEEQIDRV 60

Query: 211 -----------------------------LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
                                         E+     F        P    +    + P 
Sbjct: 61  REIHNQDLADGFGAVWLPHALARKYPNAPREFGWQYMFPSAKRSTDPRSGRVGRHHIEPK 120

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             QR ++Q  R  G+    + HT RHSFATHLL  G D+R+IQ +LGH  ++TT IYT+V
Sbjct: 121 SLQRAVKQAVRAAGVSKPASCHTFRHSFATHLLEAGYDIRTIQELLGHRDVNTTMIYTHV 180

Query: 302 NS 303
            +
Sbjct: 181 AN 182


>gi|325696498|gb|EGD38388.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK160]
          Length = 356

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 110/326 (33%), Gaps = 45/326 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  +  +F  ++            +I +  +  ++  ++ AFI   R +   
Sbjct: 33  YSFTTLYEYLKEYDRFFNWVLESGITDASHIAEIPLSILENMTKKDMEAFILYLRERPLL 92

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                   +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 93  NANITQNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATKKKKETLAA 152

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA--------RNSAILYLLYGCGLRIS 171
           +  N   +     +    +  +      +              R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETEEFLQYIDTEYPKKLSNRALSSFNKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLF 230
           EA++L  ++I      + +  KG K   V +    +  + EY  +              F
Sbjct: 213 EAVNLDLKDINLKMMVIEVTRKGGKRDSVNVAAFAKSYLEEYLSIRSKRYKAEKTDTAFF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +        +  T H LRH+ AT L         +   L
Sbjct: 273 LTEYRGTPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH     T +YT++ +    + + ++
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNALDKL 356


>gi|299141181|ref|ZP_07034318.1| integrase [Prevotella oris C735]
 gi|298577141|gb|EFI49010.1| integrase [Prevotella oris C735]
          Length = 444

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 58/298 (19%), Positives = 105/298 (35%), Gaps = 21/298 (7%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97
           SY    R    F+     + I I  I +  + E R ++ KR    +   ++   L  +  
Sbjct: 132 SYAD--RNLHEFVKDKGVQDILIGAITEDLFEEYRFYLKKR---GLKGTTINNYLCWLSR 186

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
            +     + I   +   N +  K+  ++ R L +     L+   +  +  E         
Sbjct: 187 LMYRAVSQNIIRCNPFENAKYEKEDKNI-RYLQKYNVARLMAMRMNDSEAEQA------R 239

Query: 158 AILYLLYGCGLRISEALSLTPQNIM---DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213
            +       GL I++  +L  ++I    D Q  +R  + K     +VPL P     I   
Sbjct: 240 LMFIFSCFTGLAIADMETLQYKHIQTTADGQKYIRKERQKTKVEFVVPLHPIAETIISHC 299

Query: 214 YDLCPFDLNLNIQLPLFRGI-----RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
                 DL         +            +  V    +  + +  G+    + H  RH+
Sbjct: 300 RKANHNDLTTRQDEQTMKEKGDGFVFHPDSSRSVMNSKLYIVGKACGISQRLSFHMARHT 359

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
           F T  LS G  + SI  ++GH  +S+TQIY  V      + M  +  +      + DK
Sbjct: 360 FGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDCKISEDMNRLIAKHQEKNKEDDK 417


>gi|261839501|gb|ACX99266.1| phage integrase family protein [Helicobacter pylori 52]
          Length = 355

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 63/286 (22%), Positives = 125/286 (43%), Gaps = 21/286 (7%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           + +Y     +F  +      +KI++++++ +    +  F+S   T  +   + K     +
Sbjct: 72  INTYALPLLKFHEYT-----KKISLKSLKSIDEVMLAEFLS-VYTGGLSLATKKNYRIAL 125

Query: 96  KSFLKYLKKRK-------ITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLLHTS 146
                Y+ K+              + N+  + +   N LP  LN ++    ++   +   
Sbjct: 126 LGLFSYIDKQNQDENEKSYIYNITLKNISGVNQSAGNKLPTHLNNEELEKFLEG--IDKI 183

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLP 204
             +  + ARN  ++ ++   G+R +EAL L  ++   +    T+ I+GKGDK R V L  
Sbjct: 184 EMSAKVRARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLKA 243

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AH 263
              +++L+ + +      +   L LF   +G  L      + + ++  +  L      AH
Sbjct: 244 FHIESLLKEWLMERELYPVKNDL-LFCNQKGSALTQAYLYKQVERIINFADLRREKNGAH 302

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            LRHSFAT L     DL  +Q  LGH  L+T++IYT+ + +   + 
Sbjct: 303 MLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 348


>gi|227510376|ref|ZP_03940425.1| site-specific tyrosine recombinase XerS [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
 gi|227190028|gb|EEI70095.1| site-specific tyrosine recombinase XerS [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
          Length = 362

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 58/351 (16%), Positives = 130/351 (37%), Gaps = 48/351 (13%)

Query: 14  LLKERQNWLQNLEIERG---LSKLTLQSYECDTRQFLIFLAFYTE------EKITIQTIR 64
           L+ E   ++Q+  +E+    LS  TL  Y  +  +F  ++           + I +  + 
Sbjct: 13  LIAEMPTYVQDYYLEKSTVPLSPATLYQYLNEFHRFFTWIMDTGITNAVKIKDIPLSDLE 72

Query: 65  QLSYTEIRAFISKRRTQK----------IGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
           +    ++  + +    +           +  R++ RSL+ + +  +YL +     +    
Sbjct: 73  KFKKQDMELYKAFLLNRGKETAKNPQGTLSHRTVNRSLNALSALFRYLTEESENDDGEPY 132

Query: 115 NMRNLKKSNSL-PRALNEKQALTLVDNVLLHTSHETKWIDA------------------- 154
             RN+ K  +L P +   +     + + L+    +  +++                    
Sbjct: 133 FYRNVMKKIALVPDSETYQTRARNIKDKLMLGDADVNYLNYILNDYSKQIKGKRLLKMHE 192

Query: 155 ----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
               R+ AI  L+ G G+R+SE  +    ++   ++T+ +Q KG K   VP+   V   I
Sbjct: 193 RDRERDVAINALMLGTGIRVSELTNANLNDLNLKKATVSVQRKGGKRDSVPIANWVIPYI 252

Query: 211 LEYYDLCPFDLNLNIQLP-LFRGI---RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
             Y  +     +     P LF        + ++    +  + +  +     +  T H LR
Sbjct: 253 KPYLQVRNQRYHATAATPSLFLTKGVDEPRRISTATVELLVAKYSQAFN-HVRITPHKLR 311

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           H+ A+ L     +   + + LG      T +YT++        + E++   
Sbjct: 312 HTLASKLYLETNNEHLVATQLGQTSTKATGLYTHIVDTKQKKALDELHKDH 362


>gi|171779414|ref|ZP_02920378.1| hypothetical protein STRINF_01259 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282031|gb|EDT47462.1| hypothetical protein STRINF_01259 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 370

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 57/326 (17%), Positives = 118/326 (36%), Gaps = 45/326 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  + R+F  ++             I + T+  LS  ++ +F+   R     
Sbjct: 47  YSFTTLYEYLKEYRRFFEWILDSGISNANQITDIELGTLEHLSKKDMESFVLYLRERPSL 106

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                 Q +   ++ R+LS + S  KYL +       +    RN+               
Sbjct: 107 NTYSTKQGVSQTTINRTLSALSSLFKYLTEEVEDENGDPYFYRNVMKKISTKKKKETLAA 166

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA--------RNSAILYLLYGCGLRIS 171
           +  N   +     + +  ++ +     ++              R+ AI+ LL   G+R+S
Sbjct: 167 RAENIKGKLFLGDETMAFIEYIDKEYQNKLSHRALSSFQKNKERDLAIISLLLASGVRLS 226

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLF 230
           EA++L  +++  +   + I  KG K   V +    +  + +Y  +         Q   LF
Sbjct: 227 EAVNLDLKDLHLNMMVIEITRKGGKRDSVNVAAFAKPYLEDYLKIRAPRYKAEKQDQALF 286

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +  +     +  T H LRH+ AT L         +   L
Sbjct: 287 LTEYRGVPNRIDASSIEKLVAKYSQ--DFKVRVTPHKLRHTLATRLYGATKSQVLVSHQL 344

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH     T +YT++ +    + + ++
Sbjct: 345 GHASTQVTDLYTHIVNDEQKNALDKL 370


>gi|324994455|gb|EGC26368.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK678]
          Length = 356

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 110/326 (33%), Gaps = 45/326 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  +  +F  ++            +I +  +  ++  ++ AFI   R +   
Sbjct: 33  YSFTTLYEYLKEYDRFFNWVLESGITDASHIAEIPLSVLENMTKKDMEAFILYLRERPLL 92

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                   +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 93  NANTTQNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATKKKKETLAA 152

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA--------RNSAILYLLYGCGLRIS 171
           +  N   +     +    +  +      +              R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETEEFLQYIDTEYPKKLSNRALSSFNKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLF 230
           EA++L  ++I      + +  KG K   V +    +  + EY  +              F
Sbjct: 213 EAVNLDLKDINLKMMVIEVTRKGGKRDSVNVAAFAKPYLEEYLSIRSKRYKAEKTDTAFF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +        +  T H LRH+ AT L         +   L
Sbjct: 273 LTEYRGSPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH     T +YT++ +    + + ++
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNALDKL 356


>gi|255279724|ref|ZP_05344279.1| integrase/recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
 gi|255269497|gb|EET62702.1| integrase/recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
          Length = 280

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 110/298 (36%), Gaps = 31/298 (10%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           + +++ + L  E    + T++ Y  D R F  ++   T +K T    +            
Sbjct: 9   DIRDFQKYL-YEEECCEGTIKKYIRDVRSFQRWVLNQTIQKETAARWKN----------- 56

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                     ++   +S +  F  ++   +   +   L ++  +      + L+EK+   
Sbjct: 57  HLLEAGYVSTTINSMVSAVNRFFDFMGWTECRVK--FLQIQR-RVFREQTKELSEKEYKK 113

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+           +        ++  +   G+R+SE   +T +     ++ + ++ K   
Sbjct: 114 LLRAAERKGQERLE-------LLMETIGSTGIRVSETTYITVEAAKTGRAEISLKRK--- 163

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +R++ L   + + +L Y              P+F    G+ L+       ++QL +  G+
Sbjct: 164 VRVILLPNKLCRKLLRYARRQNIAAG-----PIFLTKSGRCLSRRQIWYEMKQLCKSAGV 218

Query: 257 PL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                  H LRH FA        DL  +  ILGH  + TT+IY     K     + ++
Sbjct: 219 EETKVFPHNLRHLFAVIFHRACNDLVKLADILGHSSIETTRIYLISTGKEHAAQIEKL 276


>gi|294617320|ref|ZP_06696960.1| transposase A [Enterococcus faecium E1679]
 gi|291596429|gb|EFF27682.1| transposase A [Enterococcus faecium E1679]
          Length = 361

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 132/362 (36%), Gaps = 71/362 (19%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           ++L++    +++ L+   G S  T+++Y    +    F+            +  +++  +
Sbjct: 23  YQLIEPVMKFIKYLDNT-GKSPNTIKAYCYHLKLLYEFMEQRG------VILNDINFELL 75

Query: 72  RAFISKRRTQKIGD-------------RSLKRSLSGIKSFLKYLKKRKITTESNI----- 113
             F+   R     +              ++   L+ + SFL YL +       ++     
Sbjct: 76  ADFVGWLRYPSASNVIDLQSKKAIREETTVNTILNVVMSFLDYLSRLGEFKSIDVFKQAK 135

Query: 114 -----------------LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
                             N+  L+      R L  ++   ++D               R+
Sbjct: 136 GRNFKGFLHHVNKGRYQKNVLKLRVKKKQIRTLRSEEVKQIIDAC----------HTKRD 185

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----------KGDKIRIVPLLPSV 206
             IL L+Y  GLRI E LSL  ++I+   + + +            K  K R + +   +
Sbjct: 186 KLILMLMYEGGLRIGEVLSLRLEDIVTWDNQIHLTPRDVNVNEAYIKLRKERTIHVSKEL 245

Query: 207 RKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
                +Y      +   +  +   L  G  GKPL        +R++ +  G+    T+H 
Sbjct: 246 MSLYTDYLIYEYSEELEHDYVFISLKEGYFGKPLKYQSVLDLVRRIVKRTGIEF--TSHM 303

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
           LRH+ AT L+  G D+  +Q  LGH  + TT   Y +++ ++    M   +++       
Sbjct: 304 LRHTHATQLIREGWDVAFVQKRLGHAHVQTTLNTYVHLSDQD----MKNEFNKYLERKEH 359

Query: 324 KD 325
           K 
Sbjct: 360 KK 361


>gi|186896553|ref|YP_001873665.1| integrase family protein [Yersinia pseudotuberculosis PB1/+]
 gi|186699579|gb|ACC90208.1| integrase family protein [Yersinia pseudotuberculosis PB1/+]
          Length = 327

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 67/300 (22%), Positives = 116/300 (38%), Gaps = 36/300 (12%)

Query: 17  ERQNWLQNLEIERGLSKL-TLQ-SYECDTRQFLIFLAFYTEEKITIQT---IRQLSYTEI 71
             + WL     +R LS+L TL  SY      +         + I I +     Q+    I
Sbjct: 47  HEKEWLSKPTDKRSLSELSTLWWSYHGQNMDYGQKYKVQLAKVIRIMSDLCAFQIDKNVI 106

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILNMRNLKKSNSLPRALN 130
             + + R    +   S+ R L+ +      L       +E  +  +  LK   +    L+
Sbjct: 107 ARYRAIRLAGGVKASSVNRDLAVLSGMFTALINAGVYHSEHPLAGISKLKPKQTARAFLS 166

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           + +   L++            +D  N  +  L    G R  EA+ L  ++I+D++ T  +
Sbjct: 167 QSEIKELLNC-----------LDGDNRRVAILCLSTGARWGEAIKLRTEHIIDNRITF-V 214

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
             K  K R VP+   V             DL       LF           +F++ ++ +
Sbjct: 215 ATKNGKQRTVPISRDV-----------FNDLTAMKSGLLFNDAAYL-----IFRQKLKSV 258

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                LP     H LRH+FATH + NGG++ ++Q ILGH  +  T +Y + +     D +
Sbjct: 259 --KTDLPQGQATHVLRHTFATHFMINGGNIITLQRILGHSTIQQTMLYAHFSPDYLQDAV 316


>gi|160938619|ref|ZP_02085971.1| hypothetical protein CLOBOL_03514 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438318|gb|EDP16077.1| hypothetical protein CLOBOL_03514 [Clostridium bolteae ATCC
           BAA-613]
          Length = 298

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 54/306 (17%), Positives = 115/306 (37%), Gaps = 35/306 (11%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +++++ ++    WL++ E     S  T++ Y    +QF  F+               ++ 
Sbjct: 8   LITYQKIEAFGQWLESCE----RSMETVKKYRHYLKQFKEFIGE-----------EPVTK 52

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +  + +  R + I   ++   ++ +  F KY       ++   ++  +        + 
Sbjct: 53  EMVLLWKANLR-EHITPVTINCVIAALNGFFKYCGWDGCESKFLKISKSSFYPER---KE 108

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L + +   LV     + +          + +L  +   G+R+SE   +T   I   Q+ +
Sbjct: 109 LTKDEYKRLVKTAFDNGNERL-------ALVLETICASGIRVSELSFITVAAIHKGQAEI 161

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
             +G   +IR V L   +   +  Y         +     +F    GKPL+     R ++
Sbjct: 162 ECKG---RIRTVLLTRQLCSLLHSYAQKNNISSGM-----IFVTKNGKPLDRSNIWREMK 213

Query: 249 QLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            L     +       H LRH FA        +L  +  ILGH  ++TT+IYT  +     
Sbjct: 214 ALGIEANVKAEKIFPHNLRHLFARTYYEIEKNLSKLADILGHRDINTTRIYTKESGSQHR 273

Query: 308 DWMMEI 313
             + ++
Sbjct: 274 IQLEKM 279


>gi|212691154|ref|ZP_03299282.1| hypothetical protein BACDOR_00644 [Bacteroides dorei DSM 17855]
 gi|212666386|gb|EEB26958.1| hypothetical protein BACDOR_00644 [Bacteroides dorei DSM 17855]
          Length = 285

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 106/287 (36%), Gaps = 34/287 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            L+K T+ SY    + FL                 +++   + A+      +    +++ 
Sbjct: 31  NLAKNTVTSYVWTVQYFLNHYG-------------EVNKKNLLAYKGYL-VENFKPQTVN 76

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             L GI  +L++ K+ K+        ++ +K        L  +  ++  D   L    + 
Sbjct: 77  LRLQGINKYLEFTKQEKL-------KVKFVKVQQK--NFL--ENVISDADYKFLKAQLKV 125

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              +     I++ +   G R+SE L +  ++I      L +  KG KIR + +  ++R  
Sbjct: 126 DGYEEW-YFIVWFMAATGARVSELLHIKAEHI--KVGYLDLYSKGGKIRRLYIPKNLRTE 182

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHS 268
             ++               +F    G+ +        ++      G+       H+ RH 
Sbjct: 183 SEKWLKNQGL-----TSGYIFLNRFGQRITTRGIASQLKHFAEKYGMNKEVVYPHSFRHR 237

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           FA + L    DL  +  ++GH  + TT+IY    +      + ++ +
Sbjct: 238 FAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDKVVN 284


>gi|301308338|ref|ZP_07214292.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300833808|gb|EFK64424.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 380

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 94/262 (35%), Gaps = 33/262 (12%)

Query: 63  IRQLSYTEIRAFISKRRT-------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           +  +       +I   R+       + +  ++     + +++ L    +  +   +    
Sbjct: 133 LCDVDKQFYLDYIDWLRSSCKTAWGKPVSPKTAHSYYTTLRTALNEAVRENLIASNPWYR 192

Query: 116 MR---NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           +     +K   S    L  ++   ++     +      ++ +           CGLRIS+
Sbjct: 193 LEMTEKIKVPESKRDFLTIEEIKRMMATPFFNEQVRQAYLFSC---------FCGLRISD 243

Query: 173 ALSLTPQNIMDDQSTLR---IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
              L  +++       R   +  K      +PL     K + E  D  P  L       +
Sbjct: 244 IRKLRWRDLSMSGGQWRASVVMTKTIHPVYIPLSSQAVKWLPERGDCTPDGL-------V 296

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F G+     N G     ++      G+  + T HT RHS A  LL+ G D+ ++  ILGH
Sbjct: 297 FGGLP----NEGNLCVNLKNWAEKAGVKKNVTFHTARHSCAVLLLTLGADIYTVSKILGH 352

Query: 290 FRLSTTQIYTNVNSKNGGDWMM 311
             + +TQ+Y  +  K   D + 
Sbjct: 353 RSVRSTQVYAKIVDKKKDDAIA 374


>gi|291586250|gb|ADE18874.1| IntI1 integrase [Escherichia coli]
          Length = 273

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 52/292 (17%), Positives = 106/292 (36%), Gaps = 64/292 (21%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVNWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
                +     F  + +   P    +R   +    FQR  ++     G+   
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKP 273


>gi|257463481|ref|ZP_05627875.1| integrase/recombinase [Fusobacterium sp. D12]
 gi|317061040|ref|ZP_07925525.1| integrase/recombinase [Fusobacterium sp. D12]
 gi|313686716|gb|EFS23551.1| integrase/recombinase [Fusobacterium sp. D12]
          Length = 333

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 128/298 (42%), Gaps = 22/298 (7%)

Query: 32  SKLTLQSYECDTRQFLIFL----AFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDR 86
           S  TLQ Y    + FL F+    A + +++I +  ++ +   ++  +IS   + +K+   
Sbjct: 33  SPKTLQDYLFYLKDFLSFVYEGEASFQQDEI-LPLMKGVEREDVEQYISHLLQERKMKKS 91

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL--NEKQALTLVDNVLLH 144
           S+ + +S +KS  K  +      E+    ++  K + +L   L  +      +++   + 
Sbjct: 92  SVNKVISAMKSLYK--ELEAYQVENPFRYVKLFKTARNLDNILKISSNDIKHIIERFQIK 149

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVP 201
           +       D RN  ILY LY  G+R  E L +  +++++ + +  ++    K  K +  P
Sbjct: 150 SEK-----DYRNLMILYTLYYTGVRSDELLHMEFRHLLNREGSYFLKLEKTKSGKEQYKP 204

Query: 202 LLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG--LP 257
           + P++ + + EY         L        F        N  +  R +  L + LG  + 
Sbjct: 205 IHPALMEELQEYKKEMKALHRLEEEDLQNHFIFCSHFEKNKALSYRALYDLIKSLGLSIE 264

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
              + H +RH+ AT L  NG DL  I+  LGH     T++Y N  S      + +I D
Sbjct: 265 KDMSPHNIRHAIATELSLNGADLVEIRDFLGHADTKVTEVYINAKSILEKRVLNKIPD 322


>gi|160914347|ref|ZP_02076566.1| hypothetical protein EUBDOL_00355 [Eubacterium dolichum DSM 3991]
 gi|160915333|ref|ZP_02077545.1| hypothetical protein EUBDOL_01341 [Eubacterium dolichum DSM 3991]
 gi|158432724|gb|EDP11013.1| hypothetical protein EUBDOL_01341 [Eubacterium dolichum DSM 3991]
 gi|158433820|gb|EDP12109.1| hypothetical protein EUBDOL_00355 [Eubacterium dolichum DSM 3991]
          Length = 266

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 109/298 (36%), Gaps = 36/298 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + + LE     SK T+ SY     Q+ I       E I  + ++Q     I  +    
Sbjct: 3   KQFKEYLEKT-NFSKNTIDSYVFAVDQYFIQY-----EDINKKNLKQYKTWLIENY---- 52

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  +++   L  I  +L++L K         L +  +K           +  ++  
Sbjct: 53  -----KPKTVNLRLRAINCYLEFLSKG-------SLKLPFIKIQQKT----YLENVISEA 96

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D   L    +   +D     ++  L   G R+SE + +  +++      + I  KG K+R
Sbjct: 97  DYNYLKNCLKKDDLDW--YMVVRFLAATGARVSELIQIKVEHVQL--GYIDIYSKGGKLR 152

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            + +   ++K  L +      +        +F    G  +        +++      +  
Sbjct: 153 RIYIPVKLKKEALIWLKSRNQETG-----FIFLNKYGNRITTRGISGQLKKFALKYDINP 207

Query: 259 ST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    H+ RH FA + L+   D+  +  ++GH  + TT+IY    S    + +  + D
Sbjct: 208 NVVYPHSFRHRFAKNFLAKCNDIAFLADLMGHESIETTRIYLRKTSTEQQELVDNLID 265


>gi|29349430|ref|NP_812933.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341339|gb|AAO79127.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 409

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 59/271 (21%), Positives = 117/271 (43%), Gaps = 25/271 (9%)

Query: 50  LAFYTEEKITIQTIR--QLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRK 106
           +  + E K  ++ +   QL+   I  + S     +     +++  L+ +K   +   K  
Sbjct: 144 IGEFIENKYKVKDLAFGQLTEQFIHDYQSFATEEKGYAIDTVRHHLAILKKICRLAYKDG 203

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
                +  +    KK+ + PRAL+ +    + D  +   ++    I AR+  +       
Sbjct: 204 YADRIHFQHFTLPKKTETTPRALSRESFEKIRDVEI--PAYRKSHILARD--MFLFGCYT 259

Query: 167 GLRISEALSLTPQNIMDDQS---TLRIQGKGDKIR-IVPLLPSVRKAILEYYDLCPFDLN 222
           G+  ++ +S+T +N+  D+     L+ + K +++R  V LLP     I +Y        +
Sbjct: 260 GVCYADVVSITHENLYTDEDGALWLKYRRKKNELRACVKLLPEAIALIEKY-----HSED 314

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLR 281
            +   PL        L+    +R+++ L    G+      H  RHSFA+ + L  G  + 
Sbjct: 315 RDTLFPL--------LHWSNLRRHMKALAALAGIKDDLCYHQARHSFASLITLEAGVPIE 366

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           +I  +LGH  +STTQ+Y  V+ K   + M +
Sbjct: 367 TISRMLGHSDISTTQVYARVSPKKLFEDMDK 397


>gi|251780370|ref|ZP_04823290.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243084685|gb|EES50575.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 398

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 70/335 (20%), Positives = 133/335 (39%), Gaps = 53/335 (15%)

Query: 18  RQNWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
             ++L     E     L + T+ +Y    + ++       + K+ I  ++ L+   +++F
Sbjct: 65  FNDYLDYWIKEYAQVNLKETTVDNYNKKIKLYI-------KPKLGIYKLKSLTPAILQSF 117

Query: 75  ISKRRTQKIGDRSL---KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           I+++  +     +L   K  LSG  S    ++       S +  +R      ++P     
Sbjct: 118 INEKFNEGFSRNTLLVLKGILSG--SLNYAVEPLGYIKFSPMAAVRLP-LKRAVPNTPTR 174

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           K+   ++    +    E    +  +   L L Y CGLR+ EA ++T +++  +   L I 
Sbjct: 175 KKEKYIISEEQMKKIFERFPFEHSSYLPLQLAYRCGLRLGEAFAITWEDVDFENGKLDIN 234

Query: 192 G--------------KGDKIRIVPLLPSVRKAILEYYDLCPFD------------LNLNI 225
                          K D  RI+ L  ++   + +Y      D            +N   
Sbjct: 235 KQVQYKNKYWYFSPPKYDSYRIIDLDNTIIDILKKYKQQQRKDKIYYGELYTELKINDKK 294

Query: 226 QLPLFRGIRGKPLN---------PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
           Q+  F G     +N         P V Q     +   LG+      H+LRH+ AT LLS+
Sbjct: 295 QINEFDGTEIHLINIRENGTYIQPRVMQHCFHIIHHKLGI-KELDYHSLRHTHATMLLSS 353

Query: 277 GGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           G +++++Q  LGH +L  T  +YT+V  K   + +
Sbjct: 354 GANIKAVQERLGHKKLDMTLDVYTHVTDKMRKNTI 388


>gi|295697302|ref|YP_003590540.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295412904|gb|ADG07396.1| integrase family protein [Bacillus tusciae DSM 2912]
          Length = 413

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 62/292 (21%), Positives = 108/292 (36%), Gaps = 22/292 (7%)

Query: 22  LQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           L    +E   RG S    ++     R FL FLA    E +T  T   L+   +  +++  
Sbjct: 117 LDAFTVECQRRGYSPYGQRTRMGRIRLFLAFLAS---ENVTPDT---LTARHVSRYVTTL 170

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLPRALNEKQALT 136
                  +++   L+ +++FL++L       +     +  ++      LP          
Sbjct: 171 M--NYNPKTVLAILTNLRTFLRFLHDAGFHAQDLSGAVPRVRAGRYERLPSVWPADTVQR 228

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-RIQGKGD 195
           L+     +          R+ AIL L    G+R+ +  +LT   +  +  T+  +Q K  
Sbjct: 229 LL-----NAVDRGNPTGKRDYAILLLAARLGMRVGDIKALTLSALHWESKTITWVQQKTG 283

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           +    PLL  V  AI++Y           +             +       I +  R  G
Sbjct: 284 RAIEYPLLDDVGWAIIDYLKYGRPATTSPVLFVRHYAPFEPFGSHANLHHIITRYVRRAG 343

Query: 256 LPLSTTAH---TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + +    H    LRH+ A+ LL     L  I  ILGH    +TQ+Y  VN +
Sbjct: 344 ISVPAGHHGMHALRHTLASTLLERETPLPVIAEILGHLSTQSTQVYLAVNRE 395


>gi|229176443|ref|ZP_04303878.1| Tn554-related, transposase A [Bacillus cereus MM3]
 gi|228607025|gb|EEK64412.1| Tn554-related, transposase A [Bacillus cereus MM3]
          Length = 372

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 61/366 (16%), Positives = 142/366 (38%), Gaps = 82/366 (22%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+ L+   G S+ T ++Y    +Q+ ++L        T +  +++   ++  F+   R
Sbjct: 29  KYLKYLDST-GKSRNTQKTYCYALKQYFLYLRE------TEKNYKEIKLEDLADFVGWLR 81

Query: 80  --------------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTES-------------- 111
                           K  ++++  +++ + +F  YL + +  ++               
Sbjct: 82  HPYTSLNVASITPVKSKKTEKTVNLTITTVTNFYDYLYRNEEISKDMNEKLMRQIYTGGR 141

Query: 112 ---------------NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
                          +I N+  +K+     + L ++Q               T   + R+
Sbjct: 142 TRYKSFLHHINKNKPSIRNVLKVKEPRKRIQILTKEQVRQTF----------TATTNIRD 191

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQ---STLRIQGKGD---------KIRIVPLLP 204
           + ++ LL+  GLRI EALSL  ++ + D      +R++ +G+           R + +  
Sbjct: 192 AFLIQLLFETGLRIGEALSLYLEDFIFDHQKGHRIRLRDRGELENGAKLKTGEREIFVSQ 251

Query: 205 SVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            +     +Y       LN+        L     G+P+N    +   ++LR+   +     
Sbjct: 252 HLMDLYDDYLYEIIDGLNIETNFVFIKLRGRNMGRPMNYSDVESLFKRLRKKTKID--IH 309

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQTHPS 320
            H LRH+ AT       D++ +Q  LGH ++ TT  +Y + + ++    + + +++   +
Sbjct: 310 PHLLRHTHATIYYQETKDIKQVQERLGHAQIQTTMNLYLHPSDED----IRKDWEKAQDA 365

Query: 321 ITQKDK 326
               +K
Sbjct: 366 FKIDEK 371


>gi|255281089|ref|ZP_05345644.1| site-specific recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
 gi|255268537|gb|EET61742.1| site-specific recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
          Length = 291

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 63/313 (20%), Positives = 121/313 (38%), Gaps = 34/313 (10%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
              N+   +S E+L++ +  ++N   E+  S  T++ Y  D + F  +            
Sbjct: 8   RKRNMEHYISDEMLQQFEKMMRN--DEK--SDATVRKYMHDLKAFQQYAEKKQP------ 57

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
               ++   +  +      +     S+   L+ +  F K        T S  +   + ++
Sbjct: 58  ----VTKQVVIVYKQYLM-EHYAVSSVNSILAALNGFFKEYGWYDCMTRSLRVQRNSFRR 112

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           S+   + L ++    LV           K  + R S I+  +   G+R+SE   +T + +
Sbjct: 113 SD---KELTKEGYYRLVKM-------AEKRGNTRLSLIMQTICSTGIRVSELEFITVEAL 162

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
              ++ + ++GK    R V L   + + +L+Y           +   +F    G PL+  
Sbjct: 163 YSGRAIVSLKGK---TRAVLLPAELCRKLLKYVRAHNI-----VNGCVFVSRNGNPLDRS 214

Query: 242 VFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                ++ L    G+ P     H LRH FA        D+  +  ILGH  + TT+IYT 
Sbjct: 215 NIFHDMKALCETAGVSPQKVFPHNLRHLFAVTYYEEEKDIAHLADILGHSSIDTTRIYTL 274

Query: 301 VNSKNGGDWMMEI 313
           VN K     +  +
Sbjct: 275 VNGKEQEKQIDRL 287


>gi|228477659|ref|ZP_04062288.1| transposase from transposon [Streptococcus salivarius SK126]
 gi|228250548|gb|EEK09759.1| transposase from transposon [Streptococcus salivarius SK126]
          Length = 361

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 109/295 (36%), Gaps = 35/295 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +    ++K+ +++I  +  ++ + +  +        +++      +K+      +     
Sbjct: 66  MDILKKDKLGVRSIDSIKPSDAKEWAIRMSENGYAYQTINNYKRSLKASFYIAIQDDCVR 125

Query: 110 ESNI-LNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     ++ +   +++P+  L E+Q   L+         +     ++N   + +L   G
Sbjct: 126 KNPFDFQLKAVLDDDTVPKTVLTEEQEEKLL------AFAKADKTYSKNYDEILILLKTG 179

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAIL 211
           LRISE   LT  ++  +   + I                       R VP++    +A  
Sbjct: 180 LRISEFGGLTLPDLDFENRLVNIDHQLLRDTEIGYYIETPKTKSGERQVPMVEEAYQAFK 239

Query: 212 EYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTA 262
                   D  + I      LF   +  P     +   ++ L +         LP   T 
Sbjct: 240 RVLANRKNDKRVEIDGYSDFLFLNRKNYPKVASDYNGMMKGLVKKYNKYNDDKLP-HITP 298

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQ 316
           H+LRH+F T+  + G + +++Q I+GH  ++ T   Y +    +    M  +  +
Sbjct: 299 HSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMSEMKRLNKE 353


>gi|266625452|ref|ZP_06118387.1| integrase/recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
 gi|288862643|gb|EFC94941.1| integrase/recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
          Length = 282

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 58/302 (19%), Positives = 118/302 (39%), Gaps = 32/302 (10%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E  +  + +   L+ E   +  T++ Y  +  Q L ++              ++S   I 
Sbjct: 2   ENARNIKRYEDYLKNEE-KADATIRKYLHEVEQLLAYM-----------DKAEISKAAIL 49

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            +     +Q     ++   LS I S+L+++          +  ++ LK        ++E+
Sbjct: 50  QYRRYLSSQ-YKAGTVNGKLSAIHSYLEFMNLD-------MCKVKFLKVQKK--AYIDEE 99

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + LT  D   L  S            ++ +LY  G+RISE   +T + +   ++ + ++G
Sbjct: 100 RELTEQDYRRLLDSAGRMGKSQLYYLMM-VLYSTGIRISELPYVTVEAVCQGKTEIYMKG 158

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K    R++    ++ K + E+               +FR   G+ L+       +++L  
Sbjct: 159 KC---RLIIFPKNLIKKLKEFIRNEKIKSGC-----IFRTRSGRDLDRSNICHSLKRLCE 210

Query: 253 YLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              + P     H  RH FA    S   +L  +  ILGH  + TT+IY   +++     M 
Sbjct: 211 EARVDPSKVFPHNFRHLFAKTFYSIEKNLAHLADILGHSSIETTRIYVAASTRQYEKVMN 270

Query: 312 EI 313
            +
Sbjct: 271 RM 272


>gi|325689712|gb|EGD31716.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK115]
          Length = 356

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 111/326 (34%), Gaps = 45/326 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  +  +F  ++            +I +  +  +S  ++ AFI   R +   
Sbjct: 33  YSFTTLYEYLKEYDRFFNWVLESGITDASHIAEIPLSVLENMSKKDMEAFILYLRERPLL 92

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                   +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 93  NANTTQNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATKKKKETLAA 152

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA--------RNSAILYLLYGCGLRIS 171
           +  N   +     +    +  +      +              R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETEEFLQYIDTEYPKKLSNRALSSFNKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLF 230
           EA++L  ++I      + +  KG K   V +    +  + EY ++              F
Sbjct: 213 EAVNLDLKDINLKMMVIEVTRKGGKRDSVNVAAFAKPYLEEYLNIRSKRYKAEKTDTAFF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +        +  T H LRH+ AT L         +   L
Sbjct: 273 LTEYRGTPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH     T +YT++ +    + + ++
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNALDKL 356


>gi|229163442|ref|ZP_04291393.1| Integrase/recombinase [Bacillus cereus R309803]
 gi|228620011|gb|EEK76886.1| Integrase/recombinase [Bacillus cereus R309803]
          Length = 332

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 51/291 (17%), Positives = 106/291 (36%), Gaps = 27/291 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GL + T+  Y      F              Q + +L+   I  ++S      + +++  
Sbjct: 57  GLRERTINDYYLHVSHFTKI--------TDTQYLEELNVNHIYEWLSSM---NVSNQTKL 105

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             L  +K+FL           +   N++ +K    +     +++      N+LL     T
Sbjct: 106 TRLKCLKAFLGRCHDNGWIDINFWRNVK-IKVDTPVKEGATDREI-----NILLSVLDLT 159

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG--KGDKIRIVPLLPSVR 207
           +++D R++  + L+Y  G+R+     L  +++  D   L I G    +   I        
Sbjct: 160 RFLDLRDATAILLMYQTGIRVGTLAQLEHRHVDLDTKVLSIDGGIIKNHESIYLPFDDAL 219

Query: 208 KAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPL----NPGVFQRYIRQLRRYLGLPLST 260
             +L+        +          LF    G  +       +  + + +  +  GL  + 
Sbjct: 220 ARLLDVLMKQNEIIRSEYNVKNDYLFITKSGGSVLTSPTNNIISKRMTKHAKEYGL-KNI 278

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             H +R  FA +LL  G ++  I   LGH  +S T  Y +++     + + 
Sbjct: 279 NPHAIRRGFAKNLLKKGANVALISKALGHSDISVTTRYLHLDKNEVAESLR 329


>gi|149924555|ref|ZP_01912912.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149814565|gb|EDM74148.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 374

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 54/273 (19%), Positives = 105/273 (38%), Gaps = 28/273 (10%)

Query: 41  CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLK 100
                    L  +       + + +L   ++  F +K   +   ++++    + + + LK
Sbjct: 96  SHVESIERHLRIHILPAFGDKRLDELEQEDLERFKAKL-GETRKNKTINNIQTTLSTLLK 154

Query: 101 YLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
                K+  E  +  ++ L+         +  +   L +      S  T      + AI+
Sbjct: 155 AAVAWKVIEEVPVE-IKRLRVVRKKMDFFDFDEFARLREFAAKAPSDAT------DLAIV 207

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----------KGDKIRIVPLLPSVRKAI 210
            L    GLR  E   L   ++   ++ L ++           K DKIR++P+   ++KA+
Sbjct: 208 LLGGDAGLRAGEIRGLHWNSLDFQRNRLTVEWAEWRGQITTPKHDKIRVLPMTQRLQKAL 267

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            +        L      P         L  G+  + +R++ +  GL      HTLRH+F 
Sbjct: 268 RQLPRDRKLVLAQPSGDP---------LTVGLLSKRLRRVEKRAGL-RDKGPHTLRHTFC 317

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +HL   G   R IQ + GH  L TT+ Y +++ 
Sbjct: 318 SHLAMRGIPARVIQQLAGHSSLVTTERYMHLSP 350


>gi|324992908|gb|EGC24828.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK405]
          Length = 356

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 109/326 (33%), Gaps = 45/326 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  +  +F  ++            +I +  +  ++  ++ AFI   R +   
Sbjct: 33  YSFTTLYEYLKEYDRFFNWVLESGITDASHIAEIPLSVLENMTKKDMEAFILYLRERPLL 92

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                   +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 93  NANTTQNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATKKKKETLAA 152

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA--------RNSAILYLLYGCGLRIS 171
           +  N   +     +    +  +      +              R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETEGFLQYIDREYPKKLSNRALSSFNKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           EA++L  ++I      + +  KG K   V +       + EY  +             F 
Sbjct: 213 EAVNLDLKDINLKMMVIEVTRKGGKRDSVNVAAFAMSYLEEYLSIRSKRYKAEKTDTAFF 272

Query: 232 ----GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +        +  T H LRH+ AT L         +   L
Sbjct: 273 LTEYRGNPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH     T +YT++ +    + + ++
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNALDKL 356


>gi|299069268|emb|CBJ40533.1| putative integrase/recombinase protein [Ralstonia solanacearum
           CMR15]
          Length = 566

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 70/331 (21%), Positives = 124/331 (37%), Gaps = 42/331 (12%)

Query: 16  KERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           KE +  +    IERG  LS LT +    D   +  FL   +  +  +   R  +  + R 
Sbjct: 245 KEAERLILWAIIERGRPLSSLTTE----DAIAYRGFLRRPSPHERWVGPARPRASADWRP 300

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F     T  +  RS+  SLS + +  ++L +++    +    ++      +   AL+   
Sbjct: 301 F-----TDGLSARSIAYSLSVLGAMFRWLIQQRYALANPFAGIKVRGGGRT--AALDASH 353

Query: 134 ALTLVDNVLLHT-SHETKWIDARN-------SAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           A +  +  L+ T +   +W              +L   Y  GLR SE ++     I  D+
Sbjct: 354 AFSEGEWALVRTLADGLEWSYGWEAPAAQRLRFVLDFAYATGLRASELITARLGGIEADR 413

Query: 186 ---STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-- 240
                L + GKG +   V L P  R A+  Y       +      P    I    L+P  
Sbjct: 414 QGDHWLSLIGKGSRAGKVALPPLARTALDRYLVERGLPVTQARWNPQTPLIGALGLDPDG 473

Query: 241 --------GVFQRYIRQLRRYLGLP--------LSTTAHTLRHSFATHLLSNGGDLRSIQ 284
                    V +R+ R     +              + H +RH+ A+H L+ G +L +++
Sbjct: 474 GITGSRLWSVMRRFFRVAADLIEHDHTALAEKLRKASPHWMRHTHASHALARGAELTTVR 533

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
             L H  +STT IY + +       +   + 
Sbjct: 534 DNLRHASISTTSIYLHGDDVKRARQIEAAFA 564


>gi|228920886|ref|ZP_04084225.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228838817|gb|EEM84119.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 378

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 114/302 (37%), Gaps = 35/302 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
             ++L + SYE D    +  +  Y     + + I+ +    I+++ ++ + + + + ++ 
Sbjct: 76  RKAELKITSYEKD----MSLVRLYILPPFSYKKIKSIKPVMIQSYYAELKGKGLSNGTIS 131

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
                ++   K+  + +I  ++ +  ++  ++     +  + ++    +  +        
Sbjct: 132 NIHRCLRCIFKHAVEWEIIHDNIMNKVKKPREEQGEMKTWSSEECNRFLQYL-------- 183

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---------------KG 194
           K  + +      L    G+R  E L+LT ++I  D   + +                   
Sbjct: 184 KEKNIKYHMFFLLAIYTGMRRGELLALTWKDIDFDNKRILVNKSLVKTEKGLFKAATKTK 243

Query: 195 DKIRIVPLLPSVRKAILEYYDLC-----PFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIR 248
              R + +   V + +  YY         + ++LN +  +F G     PL+     R++ 
Sbjct: 244 SSNRSISISSFVIEKLQSYYSYKKKEFFRWGIHLNEEAFIFTGNTIHSPLHIDAPHRFLN 303

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGG 307
              +   +P     H LRH+ AT +L  G   + +Q  LGH  +  T   Y+++      
Sbjct: 304 DHYKKADVPR-IRIHDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQNMQQ 362

Query: 308 DW 309
             
Sbjct: 363 QA 364


>gi|255008144|ref|ZP_05280270.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           3_1_12]
          Length = 359

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 56/312 (17%), Positives = 107/312 (34%), Gaps = 51/312 (16%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECD------TRQFLIFLAFYTEEKITIQTIRQLS 67
           LL   Q +L+  E             + D       +     L  Y  E+     + ++ 
Sbjct: 76  LLDWMQTYLEYQE-------------KRDKKGIGQIKAVTHILKEYAGERF---ILDRVD 119

Query: 68  YTEIRAFISKR------RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN--- 118
               + +I         + + I   +           L    + K    +    M     
Sbjct: 120 LAFCQGYIDYMLTTFRPKGKPIAASTRNTYYQIFNGALNAAVRAKRLLRNPFNEMEKSEK 179

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            K   S+   +  ++   L+   +     +  ++ +           CGLRIS+ + L  
Sbjct: 180 PKMPESVRSYMTIEEVRALIATPMQEGRVKNAYLFSC---------FCGLRISDIVGLKW 230

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           +N+  D    R+     K +    LP   +A+       P   +     P+F        
Sbjct: 231 KNVFVDNGQYRLAVAMQKTKEPIYLPLSNEALKWM----PEREDKAADDPVFNL------ 280

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            P    +Y+R      G+    T HT RH+FAT +L+ G DL ++  +LGH  +  TQ+Y
Sbjct: 281 -PSNINQYLRPWAEAAGITKRFTFHTARHTFATMMLTLGADLYTVSKLLGHTSVRMTQVY 339

Query: 299 TNVNSKNGGDWM 310
             + ++   + +
Sbjct: 340 AKIINQKKDEAV 351


>gi|60681039|ref|YP_211183.1| putative phage integrase/recombinase [Bacteroides fragilis NCTC
           9343]
 gi|60492473|emb|CAH07243.1| putative phage integrase/recombinase [Bacteroides fragilis NCTC
           9343]
          Length = 268

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 112/296 (37%), Gaps = 34/296 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +   + L ++  ++K T+ +Y    +++        +  + I           + ++   
Sbjct: 3   EETFETLLVQANMAKNTVAAYLYAVKEYNKRHKELNKRNLLI----------YKTYLI-- 50

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +    +++   +  I  +L+Y+ K+K+        ++++K         +  + +   
Sbjct: 51  --ETYKPKTVNLRIQAINKYLEYMGKQKL-------RLKSVKVQQR-----SYLENVITN 96

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            + +       K  +     ++  L   G R+SE + L  ++I        I  KG KIR
Sbjct: 97  ADYIFLKKKLKKEDNLTWYFVVRFLAATGARVSELIQLKVEHIYL--GYYDIYAKGGKIR 154

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            + +   +++  + +      + +      LF    G+ +      + ++      G+  
Sbjct: 155 RIYIPKLLKEETIVWL-----EEHKRTSGYLFLNRYGERITTRGISQQLKNYANKYGMNE 209

Query: 259 ST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                H+ RH FA + L    D+  +  ++GH  + TT+IY   +S      + ++
Sbjct: 210 KVIYPHSFRHRFAKNFLEKFNDISLLADLMGHESIETTRIYLRRSSSEQQAIIDKV 265


>gi|228986847|ref|ZP_04146975.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228772929|gb|EEM21367.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 357

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 48/302 (15%), Positives = 111/302 (36%), Gaps = 35/302 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
             ++L + SYE D    +  +  Y       + I+ +    I+ + ++ + + + + ++ 
Sbjct: 54  RKAELKITSYEKD----MSLVRLYILPTFGYKKIKSIKPVMIQCYYAELKEKGLSNGTIS 109

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
                 +   K+  + +I   + +  ++  ++     +  + ++    +        H  
Sbjct: 110 NIHRCFRCIFKHAVEWEIIHNNIMNKVKKPREEQGEMKTWSSEECNRFL--------HYL 161

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---------------KG 194
           K  + +      L    G+R  E L+LT ++I  D   + +                   
Sbjct: 162 KEKNKKYYMFFLLAIYTGMRRGELLALTWKDIDFDNRRILVNKSIVKTEEGLFNAATKTK 221

Query: 195 DKIRIVPLLPSVRKAILEYYDLC-----PFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIR 248
              R + +   V   +  YY         + ++LN +  +F G     PL+     R+++
Sbjct: 222 SSNRSISISSFVVTELQSYYVYKKKEFFRWGIHLNEEAFIFAGNTIHSPLHIDAPHRFLK 281

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGG 307
              +  G+P     H LRH+ AT +L  G   + +Q  LGH  +  T   Y+++      
Sbjct: 282 DHYKKAGVPR-IRIHDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQNMQQ 340

Query: 308 DW 309
             
Sbjct: 341 QA 342


>gi|330825997|ref|YP_004389300.1| integrase family protein [Alicycliphilus denitrificans K601]
 gi|329311369|gb|AEB85784.1| integrase family protein [Alicycliphilus denitrificans K601]
          Length = 414

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 106/284 (37%), Gaps = 34/284 (11%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           + +  L+  +   + S+R    +   S+ R L+ ++S L    + ++  E  +  ++  K
Sbjct: 138 KRLDSLTAWQFDKWKSERLKSGLKPTSVNRELASLRSALTKAVEWELIPEHPLRKVKQAK 197

Query: 121 K-SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN----------------------- 156
              +   R L++ +   L + +    ++        N                       
Sbjct: 198 VDEDHRVRFLSDAEETRLREVLDAREANARAARVRHNEWRMQRGHEARPLIAEGEFIDHI 257

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEY 213
             ++ +    GLR  E   L   +I  ++  L+++    K  K R VPL       +  +
Sbjct: 258 RPMILVTINTGLRRGELFKLKRSDIDMEKRMLKVRAAAAKSGKSRFVPLNEEAAAMLARW 317

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            D  P +     +  +F G  G PL           + + + L      H +RH FA+ L
Sbjct: 318 MDQHPGE----DEELVFPGKDGAPLT--NVDSAWGSIVKAVKLQ-DFHWHDMRHHFASRL 370

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           +  G DL +++ +LGH  L  T  Y ++  ++    + ++    
Sbjct: 371 VMAGVDLNTVRELLGHADLKMTLRYAHLAPEHKAQAVAKLVRAA 414


>gi|324323824|gb|ADY24868.1| integrase family protein [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 390

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 64/307 (20%), Positives = 115/307 (37%), Gaps = 34/307 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEE--------KITIQTIRQLSYTEIRAFISKRRT 80
           +   + T +SY  +   F   +  + EE        +     ++ L    IR + +  + 
Sbjct: 81  KNRKEGTKKSYISEILSFCQCMVQHAEEFELNGEEVQQNDSLLKTLQPWHIRKYNAWLKQ 140

Query: 81  -------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--NLKKSNSLPRALNE 131
                        +L +    I+SFLK+L       +     ++  N+ + +   R L+ 
Sbjct: 141 VENGRNGDTYAVATLAKKTVLIRSFLKHLHVFSYIEKPLYEELQRANVNEQDRPNRDLSY 200

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRI 190
           ++ + ++                 N  IL  L   G RI E  +   ++   D +  L++
Sbjct: 201 EEVMKILGFYKEQG-------HLVNYTILLALASTGARIQELCTTRVKDLHYDGKHWLKV 253

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            GKG K+R + +   + + I E      F   L+   + PLF   RG   N       + 
Sbjct: 254 IGKGSKVRELFISEHLYECICEMRRRRGFQTVLDRGDESPLFVNQRGNFYNSKTLSNQVT 313

Query: 249 QLRRYLGLPL------STTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTNV 301
            + +   L          TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   
Sbjct: 314 DMIKKTNLEFLQYRENPVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEK 373

Query: 302 NSKNGGD 308
           + K   +
Sbjct: 374 HMKRKNN 380


>gi|307127283|ref|YP_003879314.1| integrase [Streptococcus pneumoniae 670-6B]
 gi|306484345|gb|ADM91214.1| integrase [Streptococcus pneumoniae 670-6B]
          Length = 361

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 109/295 (36%), Gaps = 35/295 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +    ++K+ +++I  +  ++ + +  +        +++      +K+      +     
Sbjct: 66  MDILKKDKLGVRSIDSIKPSDAKEWAIRMSENGYAYQTINNYKRSLKASFYIAIQDDCVR 125

Query: 110 ESNI-LNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     ++ +   +++P+  L E+Q   L+         +     ++N   + +L   G
Sbjct: 126 KNPFDFQLKAVLDDDTVPKTVLTEEQEEKLL------AFAKADKTYSKNYDEILILLKTG 179

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAIL 211
           LRISE   LT  ++  +   + I                       R VP++    +A  
Sbjct: 180 LRISEFGGLTLPDLDFENRLVNIDHQLLRDTEIGYYIETPKTKSGERQVPMVEEAYQAFK 239

Query: 212 EYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTA 262
                   D  + I      LF   +  P     +   ++ L +         LP   T 
Sbjct: 240 RVLANRKNDKRVEIDGYSDFLFLNRKNYPKVASDYNGMMKGLVKKYNKYNEDKLP-HITP 298

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQ 316
           H+LRH+F T+  + G + +++Q I+GH  ++ T   Y +    +    M  +  +
Sbjct: 299 HSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMKRLNKE 353


>gi|254168548|ref|ZP_04875392.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|197622603|gb|EDY35174.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
          Length = 305

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 107/248 (43%), Gaps = 24/248 (9%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F ++ R + +  ++L      +K   +Y   R++    N       +    +P    ++Q
Sbjct: 49  FFARERERGVSPKTLNNY---VKQLNRYFSFRRVDIHLNYFKEYRDETDMRIP---TDEQ 102

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ----STLR 189
              L+D      + +   +D RN  IL LL+  GLR++E ++L  +++  D       L 
Sbjct: 103 VKKLLD-----LNWKYYSVDLRNRTILALLFATGLRVNEVINLDWKDLYYDNVQGVWMLH 157

Query: 190 IQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           ++ GKG K R VP+ P V K + E+       +             G  ++   F++ ++
Sbjct: 158 VRMGKGRKPRKVPVPPKVIKMLFEW-----RKIQPKTDPNAIFTTPGGRISHAYFRKIVK 212

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                 G+P    AH  RH  A   L  G +L +I+  LGH  L TTQIY  ++      
Sbjct: 213 VAAERAGIPW-FHAHLARHWRAIKFLEEGVNLETIRRYLGHSSLKTTQIY--LSKMESSK 269

Query: 309 WMMEIYDQ 316
            + EI ++
Sbjct: 270 AVEEIKNK 277


>gi|116254979|ref|YP_770814.1| putative integrase/recombinase [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115259627|emb|CAK11608.1| putative integrase/recombinase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 398

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 61/289 (21%), Positives = 109/289 (37%), Gaps = 15/289 (5%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           I+  E  K    + Q L  ERGL+  T+ S++  + +FL  +       + +     L+ 
Sbjct: 111 ILRSEHEKIVDAFGQYLSTERGLAAATMGSHKLLSLRFLREVC-----PLGVDGFAALTP 165

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLP 126
             +  ++ +         S K     +++FL+YL  +   +      + ++++     LP
Sbjct: 166 QTVIGYVERHALDG-SADSGKAMCGVVRAFLRYLHLKGFISMPLAGCVPSIRRWRLAGLP 224

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             L  ++   ++D         T  +  R+ A+L +L   GLR SE  +L   +I     
Sbjct: 225 TFLPPEKVQKVLDAC-----DRTTAMGRRDYAVLMILAKLGLRASEVSNLNLDDIDWQSG 279

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           T+ + GKG +   +PL   V  A++ Y                         +       
Sbjct: 280 TILVHGKGRRQATMPLRHDVGTALVAYIRHGRPASACRRLFLRTLAPHVGFTSGSAITWI 339

Query: 247 IRQLRRYLGLP--LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            +Q      +       AH  RHS AT LL +G     I  +L H R S
Sbjct: 340 AKQALEQADIEGYAHHGAHLFRHSLATDLLRSGASFAEIGQLLRHRRPS 388


>gi|329577595|gb|EGG59028.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1467]
          Length = 405

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 109/295 (36%), Gaps = 35/295 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +    ++K+ +++I  +  ++ + +  +        +++      +K+      +     
Sbjct: 110 MDILKKDKLGVRSIDSIKPSDAKEWAIRMSENGYAYQTINNYKRSLKASFYIAIQDDCVR 169

Query: 110 ESNI-LNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     ++ +   +++P+  L E+Q   L+         +     ++N   + +L   G
Sbjct: 170 KNPFDFQLKAVLDDDTVPKTVLTEEQEEKLL------AFAKADKTYSKNYDEILILLKTG 223

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAIL 211
           LRISE   LT  ++  +   + I                       R VP++    +A  
Sbjct: 224 LRISEFGGLTLPDLDFENRLVNIDHQLLRDTEIGYYIDTPKTKSGERQVPMVEEAYQAFK 283

Query: 212 EYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTA 262
                   D  + I      LF   +  P     +   ++ L +         LP   T 
Sbjct: 284 RVLANRKNDKRVEIDGYSDFLFLNRKNYPKVASDYNGMMKGLVKKYNKYNEDKLP-HITP 342

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQ 316
           H+LRH+F T+  + G + +++Q I+GH  ++ T   Y +    +    M  +  +
Sbjct: 343 HSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMKRLNKE 397


>gi|224807|prf||1202257C gene tnpA
          Length = 361

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 66/362 (18%), Positives = 132/362 (36%), Gaps = 71/362 (19%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           ++L++    +++ L+   G S  T+++Y    +    F+            +  +++  +
Sbjct: 23  YQLIEPVMKFIKYLDNT-GKSPNTIKAYCYHLKLLYEFMEQRG------VILNDINFELL 75

Query: 72  RAFISKRRTQKIGD-------------RSLKRSLSGIKSFLKYLKKRKITTESNI----- 113
             F+   R     +              ++   L+ + SFL YL +       ++     
Sbjct: 76  ADFVGWLRYPSASNVIDLQSKKAIREETTVNTILNVVMSFLDYLSRLGEFKSIDVFKQAK 135

Query: 114 -----------------LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
                             N+  L+      R L  K+   ++D               R+
Sbjct: 136 GRNFKGFLHHVNKGRYQKNVLKLRVKKKQIRTLRSKEVKQIIDAC----------HTKRD 185

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----------KGDKIRIVPLLPSV 206
             IL L+Y  GLRI E LSL  ++I+   + + +            K  K R + +   +
Sbjct: 186 KLILMLMYEGGLRIGEVLSLRLEDIVTWDNQIHLTPRDVNVNEAYIKLRKERTIHVSKEL 245

Query: 207 RKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
                +Y      +   +  +   L  G  GKPL        +R++ +  G+    T+H 
Sbjct: 246 MSLYTDYLIYEYSEELEHDYVFISLKEGYFGKPLKYQSVLDLVRRIVKRTGIEF--TSHM 303

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
           LRH+ AT L+  G D+  +Q  LGH  + TT   Y +++ ++    M   +++       
Sbjct: 304 LRHTHATQLIREGWDVAFVQKRLGHAHVQTTLNTYVHLSDQD----MKNEFNKYLERKEH 359

Query: 324 KD 325
           K 
Sbjct: 360 KK 361


>gi|257438952|ref|ZP_05614707.1| transposase [Faecalibacterium prausnitzii A2-165]
 gi|257198630|gb|EEU96914.1| transposase [Faecalibacterium prausnitzii A2-165]
          Length = 384

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 57/317 (17%), Positives = 118/317 (37%), Gaps = 39/317 (12%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + + ++RGL   +L+SY    ++          +    + I+ +  ++ + +        
Sbjct: 77  RYMNLKRGLKPNSLRSYNTAVKR-------IHADPFGQKAIKTVKLSDAKGWFVFLHDSG 129

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
               ++    S ++   +   +  I  ++        K S+ +P+    + ALT      
Sbjct: 130 FKQNTIGILQSVVRPAFEMAVEDDIIRKNPF----KFKLSDVVPKDAYVRNALTREQQEK 185

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----------- 191
                +    +  +   + +L G GLR+SE   LT  +I  ++  + ++           
Sbjct: 186 YLQFVQDYGGNYYDD--IVILMGTGLRVSELYGLTRADIDFERHCIHVRRQLCRTAEKPY 243

Query: 192 -----GKGDKIRIVPLLPSVRKAILEYYDLC----PFDLNLNIQLPLFRGIRGKPLNPGV 242
                     IR VP+  +V  A+              L       LF    G P     
Sbjct: 244 FVTPPKTKSGIRNVPMTDTVCAALRRVVKARASTKVEALVDGCSGFLFLDKSGMPKVAMH 303

Query: 243 FQRYIRQL-----RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
            + Y+R +     + Y       T H LRH+F T++   G D++S+Q ++GH   S T  
Sbjct: 304 LENYMRGVQGKFEKAYSKPVPRITPHVLRHTFCTNVQQAGLDVKSLQYLMGHSNASVTLD 363

Query: 297 IYTNVNSKNGGDWMMEI 313
           +YT+ + ++      +I
Sbjct: 364 VYTHSSFESVERAFEQI 380


>gi|325860441|ref|ZP_08173553.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325482099|gb|EGC85120.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 414

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 99/290 (34%), Gaps = 20/290 (6%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
            +Y+       +   F  ++ +   TI  ++      +    + + +   ++ R L  + 
Sbjct: 126 STYQNLLYSDKLLTEFVKDKGMMDITISAITEDLFEEYGFYLKKRGLATATMNRYLCWLS 185

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
             + +   ++I   +   N +  K    + R L + +   L+   +     E        
Sbjct: 186 RLMYHAVSQRIIRCNPFENAKYEKAEQKI-RFLQKSEVSKLMALRVPDKEAEQA------ 238

Query: 157 SAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRI-QGKGDKIRIVPLLPSVRKAILE 212
             +       GL I++   L   ++    D Q  +R  + K     +VPL P     I +
Sbjct: 239 RRLFVFACFTGLAIADMEHLQFGHVQTAADGQKYIRKERQKTKVEFVVPLHPIAETIINQ 298

Query: 213 YY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                        +       +F        +  V    +  + +  G+    + H  RH
Sbjct: 299 CKKEQPSMKEMQTVKEKGDDFIF----HCACSRSVMSAKLSIVGKACGIRERLSYHMARH 354

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           +F T  LS G  + SI  ++GH  +S TQIY  V      + M  +  + 
Sbjct: 355 TFGTMSLSAGIPIESIAKMMGHASISGTQIYAQVTDNKISEDMDRLIRKH 404


>gi|228931327|ref|ZP_04094256.1| Integrase-recombinase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228828330|gb|EEM74036.1| Integrase-recombinase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 390

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 67/313 (21%), Positives = 124/313 (39%), Gaps = 34/313 (10%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-KITIQTIRQ-------LSYTEIRAF 74
           ++++ ++   + T +SY  +   F   +  + EE ++  + ++Q       L    IR +
Sbjct: 75  KDMDEKKNRKEDTKKSYVSEILSFCQCMVQHAEEFELNGEEVQQNESLLKILQPWHIRKY 134

Query: 75  ISKRRT-------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--NLKKSNSL 125
            +  +              +L +    I+SFLK+L       +     ++  N+ + +  
Sbjct: 135 NAWLKQVENGRNGDTYAVATLAKKTVLIRSFLKHLHVFSYIEKPLHEELQRANVNEQDRP 194

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDD 184
            R L+  + + ++                 N  IL  L   G RI E  +   ++   D 
Sbjct: 195 NRDLSYDEVVKILGFYKEQG-------HLVNYTILLALASTGARIQELCTARVKDLHYDG 247

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGV 242
           +  L++ GKGDK+R + +   + + I E      F   LN   + P+F   RG   NP  
Sbjct: 248 KYWLKVTGKGDKVRELFIPEHLFQCISEMRRRRGFQTVLNRGDESPVFINQRGNFYNPKT 307

Query: 243 FQRYIRQLRRYLGLPL------STTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTT 295
               +  + +   L          TAHT RH+FA   +  G  DL  +   LGH  + TT
Sbjct: 308 LSNQVTDMIKKTNLEFLQYRENPVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTT 367

Query: 296 QIYTNVNSKNGGD 308
           +IY   + K   +
Sbjct: 368 KIYLEKHMKRKNN 380


>gi|325849921|ref|ZP_08170960.1| site-specific recombinase, phage integrase family [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325479945|gb|EGC83028.1| site-specific recombinase, phage integrase family [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 405

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 109/295 (36%), Gaps = 35/295 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +    ++K+ +++I  +  ++ + +  +        +++      +K+      +     
Sbjct: 110 MDILKKDKLGVRSIDSIKPSDAKEWAIRMSENGYAYQTINNYKRSLKASFYIAIQDDCVR 169

Query: 110 ESNI-LNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     ++ +   +++P+  L E+Q   L+         +     ++N   + +L   G
Sbjct: 170 KNPFDFQLKAVLDDDTVPKTVLTEEQEEKLL------AFAKADKTYSKNYDEILILLKTG 223

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAIL 211
           LRISE   LT  ++  +   + I                       R VP++    +A  
Sbjct: 224 LRISEFGGLTLPDLDFENRLVNIDHQLLRDTEIGYYIETPKTKSGERQVPMVEEAYQAFK 283

Query: 212 EYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTA 262
                   D  + I      LF   +  P     +   ++ L +         LP   T 
Sbjct: 284 RVLANRKNDKRVEIDGYSDFLFLNRKNYPKVASDYNGMMKGLVKKYNKYNDDKLP-HITP 342

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQ 316
           H+LRH+F T+  + G + +++Q I+GH  ++ T   Y +    +    M  +  +
Sbjct: 343 HSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMSEMKRLNKE 397


>gi|158318043|ref|YP_001510551.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158113448|gb|ABW15645.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 416

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 58/318 (18%), Positives = 114/318 (35%), Gaps = 43/318 (13%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL  +      ++ T  +Y        + +  +    +  + + +L + +++ F++++  
Sbjct: 99  WLDEIVDPSERAESTKSNYR-------VMVNNHIRPALGSRRLVELKHEDLQRFLNRKAA 151

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALTLV 138
                 +++   S ++  L      +  + +    +R  K  K      AL+    L L+
Sbjct: 152 DGYSTSTMRTLRSVLRQALNEAVITEKISRNVAETLRVPKARKPKRNVAALSRDDGLRLL 211

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-------- 190
                      +    R+ A+  LL   GLR  EAL+L   +  +   TLR+        
Sbjct: 212 ----------AEAKSTRHYALYVLLAMVGLRRGEALALRWSDFDESAGTLRVVRQVTRVS 261

Query: 191 ---------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGK 236
                           R + L     + +  +            +       +F    G 
Sbjct: 262 GVKGLVVGPTKSQAGTRTLTLPTRCVRVLQAHRTAQHAHRQAAGKRWKENGLIFPSTVGT 321

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            + P     ++ +L +  GLP     H LRH+ AT   + G D + IQ +LGH  LSTT 
Sbjct: 322 HMEPRGLNTHLSKLCQRAGLP-HLGPHALRHTAATMAYALGVDWKQIQQMLGHTMLSTTM 380

Query: 297 -IYTNVNSKNGGDWMMEI 313
            IY ++      D   ++
Sbjct: 381 DIYVDLVDSVHRDAASKL 398


>gi|186474379|ref|YP_001863350.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198338|gb|ACC76300.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 508

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 63/316 (19%), Positives = 116/316 (36%), Gaps = 42/316 (13%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT--- 80
            L      S  TL++Y  + R+ + +          +  +  L+  ++ A+    R    
Sbjct: 172 FLRDRASRSPHTLRAYRAELRRLVAWCDTRQ-----LGPLSDLTRHDLLAYRQALRQPAQ 226

Query: 81  -------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNE 131
                  +K+ + +  R+L+ I S  +Y  +    T +    +    +S +  +P+ +  
Sbjct: 227 DAPADAHRKVSEATQSRALAVIASLFRYWTETGFLTANPAAGLVRGGRSRAGFVPQRMLP 286

Query: 132 KQALTLVDNVLLHT-SHETKWIDARNSAILYLLYGCGLRISEAL-----SLTPQNIM--- 182
              L   D  +  T   E   + AR  AI  L    G+R+ E +      L   ++    
Sbjct: 287 PALLAACDAWVAETSPGEDALVAARRRAIWTLYRYAGVRLVELVWSDDAHLPKLDVDPIG 346

Query: 183 -DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLN 239
             +Q TL + GKG K R +PL       +  Y  L           Q  L  G++G  L 
Sbjct: 347 THEQWTLHVLGKGRKPRAIPLPAVCVPVLRTYRQLRGLPPQPPPFEQAALIHGLKGGSLK 406

Query: 240 PGVFQRYIRQLRRYLG--LPLS----------TTAHTLRHSFATHL-LSNGGDLRSIQSI 286
                  ++ +       L  +           + H LRH +A  L + +   L + Q++
Sbjct: 407 GSGLYDEVKAIFVAAADRLAKTDHAGAARLRQASPHWLRHGYARALVVDHQVPLPAAQAL 466

Query: 287 LGHFRLSTTQIYTNVN 302
           LGH  + TT  Y   +
Sbjct: 467 LGHASVQTTAAYAKTD 482


>gi|304360798|ref|YP_003856919.1| gp41 [Mycobacterium phage Angelica]
 gi|302858382|gb|ADL71130.1| gp41 [Mycobacterium phage Angelica]
          Length = 362

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 55/298 (18%), Positives = 107/298 (35%), Gaps = 30/298 (10%)

Query: 20  NWLQ-NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            WL+  L+ + G+ K T+  YE         +A   +  +    +  L+  +I  ++   
Sbjct: 70  EWLRHYLDHKTGVEKSTIYDYE-------KVVAKDIDPALGPIPLAALTGDDIAKWVQAL 122

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +  +++      + S L    +      +     R  +   +    L  +Q   L 
Sbjct: 123 ADRGLKGKTISNKHGFLSSALNAAVRAGRIPGNPAAGARLPRTEKAEMVFLTREQYAKLH 182

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           DN+ L               ++  L   G R  E ++L P ++  D ST+RI       R
Sbjct: 183 DNITLPWQP-----------LVEFLVASGARWGEVVALRPSDVNRDASTVRISR--ASKR 229

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNI-------QLPLFRGIRGKPLNPGVFQ-RYIRQL 250
                     A          +++ ++          LF    G P+    F     +  
Sbjct: 230 TYEKGSYALGAPKTLKSRRTINVDASVLGKLDYSGEYLFTNTVGNPVRHNNFHANVWQPA 289

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGG 307
            +  GL +    H LRH+ A+ L++ G  L +I+  LGH  +  T   Y +++  +G 
Sbjct: 290 LKRAGLDVKPRVHDLRHTCASWLIAAGVPLPAIRDHLGHESIKITVDTYGHLDRSSGQ 347


>gi|301166958|emb|CBW26537.1| putative integrase/tyrosine recombinase [Bacteriovorax marinus SJ]
          Length = 325

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 57/308 (18%), Positives = 111/308 (36%), Gaps = 29/308 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY--------- 68
            Q +L N + +   S  T+++Y  D  ++L +        I+ +    +           
Sbjct: 17  LQEFLDNCQRQ-NKSPHTIKNYRSDLEKYLTWYENQFRGPISQKNNDTIGRYKEFLLNGG 75

Query: 69  ---------TEIRAFISKRRTQ----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
                      +  F+  RR +     +G+ S KR LS +K+F ++  K+     S + +
Sbjct: 76  EVNQRAHLFRRLFWFLKSRRKKLVQKPLGNNSAKRHLSTLKNFYEF-LKQNHEDHSKLFS 134

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +  +K+     +  +     T +       +        R   IL LLY  GLR+SE   
Sbjct: 135 INPVKEKIHSIKVKDIDIEHTPILPYDQWRTLIESTYRTRERVILQLLYWGGLRLSELSG 194

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           L   +    + T+ ++ KG     + +         E +    F         +F     
Sbjct: 195 LRYNDFQATRKTITLRRKGGYRHELKIQNF-----DEIFKNIQFMEQSAKSEYIFVNKSN 249

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           + ++       I++L        +   H+ R + AT+L     DL  ++  L H     T
Sbjct: 250 RAISTRSMYSLIKKLLLRSNCSANIGPHSFRKACATNLYKRTKDLLFVRDYLNHSDAKVT 309

Query: 296 QIYTNVNS 303
           Q Y + N+
Sbjct: 310 QTYIDTNT 317


>gi|300117727|ref|ZP_07055505.1| Tn554-related, transposase A [Bacillus cereus SJ1]
 gi|298724894|gb|EFI65558.1| Tn554-related, transposase A [Bacillus cereus SJ1]
          Length = 372

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 59/348 (16%), Positives = 136/348 (39%), Gaps = 78/348 (22%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+ L+   G S+ T ++Y    +Q+ ++L        T ++ +++   ++  F+   R
Sbjct: 29  KYLKYLDST-GKSRNTQKTYCYALKQYFLYLRE------TEKSYKEIKLEDLADFVGWLR 81

Query: 80  --------------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTES-------------- 111
                           K  ++++  +++ + +F  YL + +  ++               
Sbjct: 82  HPYTSLNVASITPVKSKKTEKTVNLTITAVTNFYDYLYRNEEISKDMNEKLMRQIYTGGR 141

Query: 112 ---------------NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
                          +I N+  +K+     + L ++Q               T   + R+
Sbjct: 142 TRYKSFLHHINKNKPSIRNVLKVKEPRKRIQILTKEQVRQTF----------TATTNIRD 191

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDD---QSTLRIQGKGD---------KIRIVPLLP 204
           + ++ LL+  GLRI EALSL  ++ + D      +R++ +G+           R + +  
Sbjct: 192 AFLIQLLFETGLRIGEALSLYLEDFIFDYKRGHRIRLRDRGELENGAKLKTGEREIFVSQ 251

Query: 205 SVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            +     +Y      +L++        L     G+P+N    +   ++LR+   +     
Sbjct: 252 HLMDLYDDYLYEIIDELDIETNFVFIKLRGRNMGRPMNYSDVESLFKRLRKKTKID--IH 309

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGD 308
            H LRH+ AT       D++ +Q  LGH ++ TT  +Y + + ++   
Sbjct: 310 PHLLRHTHATIYYQETKDIKQVQERLGHAQIQTTMNLYLHPSDEDIRK 357


>gi|301063295|ref|ZP_07203840.1| phage integrase, N-terminal SAM domain protein [delta
           proteobacterium NaphS2]
 gi|300442592|gb|EFK06812.1| phage integrase, N-terminal SAM domain protein [delta
           proteobacterium NaphS2]
          Length = 430

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 58/299 (19%), Positives = 106/299 (35%), Gaps = 48/299 (16%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T ++Y    R F  +           + + Q  +   R  +     +K+   ++      
Sbjct: 130 TRKTYLGQVRLFFRWAGK------EPKDLLQDDFVRYRDHL--LTERKLKPATVWNKFIA 181

Query: 95  IKSFLKYLKKRKITTESN----ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           I  FLK++  R    ++      L +   KK       L +K+A     N +L       
Sbjct: 182 INGFLKFMSIRSRKFKNPLNFGALALIPAKKDKGYYSVLTKKEA-----NKILKQPDRRT 236

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ----STLRIQGKGDK-----IRIVP 201
            I  R+ AIL L+   GLR  E   L+ +++  ++      + I+ +  +        + 
Sbjct: 237 LIGKRDHAILRLMLTYGLRAGEICKLSYKDLDQERVKGQQRIWIRDRKGRIGRRADTDII 296

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-----------------KPLNPGVFQ 244
           L     +A  ++ + C      N   P+F G                    KPL     +
Sbjct: 297 LNGKALQAFDDWIENCGIHFESNS--PIFAGFIWSINDGGLVVNHAQVREKKPLTVKTIE 354

Query: 245 RYIRQLRRYLGLPLS---TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             + +     G+       + H LRH+  T L   G  L  ++ + GH  +STT IY +
Sbjct: 355 NIVLKYTESAGIENRDRVISPHALRHTALTLLARAGITLVDLKWLAGHQDVSTTMIYLH 413



 Score = 44.6 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 12/81 (14%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + + L    G S  T + Y  + RQF  F             I QL+ +    +      
Sbjct: 13  FKRYLAKFDGKS--TQKVYRSEIRQFFDFFRG---------DIDQLNKSAFLRYRDHL-A 60

Query: 81  QKIGDRSLKRSLSGIKSFLKY 101
           Q +G +++KR  S +  F K+
Sbjct: 61  QNVGAKTIKRKFSILNQFFKF 81


>gi|260642076|ref|ZP_05414491.2| site-specific recombinase, phage integrase family [Bacteroides
           finegoldii DSM 17565]
 gi|260623620|gb|EEX46491.1| site-specific recombinase, phage integrase family [Bacteroides
           finegoldii DSM 17565]
          Length = 420

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 65/301 (21%), Positives = 124/301 (41%), Gaps = 31/301 (10%)

Query: 20  NWLQNLEIER-GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++L+  E E+ G S  TL+    D R  +    +  E       +  +     R FI   
Sbjct: 128 DFLKEYEQEKFGFSASTLKG-RRDLRGKIE--TYLKETNRPDIVLANVDVDFCRGFIDFL 184

Query: 79  RTQKIGDR---------SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           R  K G R         +     + +   L    +  I + + + ++ +  K    P + 
Sbjct: 185 RYAKNGVRKDGSVISNGAAHHHQAVLNGALNKAVRDGILSANPLKSISS--KEKYQP-SE 241

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQST 187
           + ++ LTL +  ++  +  +   +    A L+  +  GLR+ +  SLT   I+   D  T
Sbjct: 242 SMREYLTLEEMKVVMAA--SCPHEDVKRAFLFSCF-TGLRLGDVRSLTWGKIVKAPDGKT 298

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           L ++ K +K + +  +P  ++AI         +   N + P+F      P      +R I
Sbjct: 299 LFVRTKMEKTQKIVNVPLSKEAID------CLNPKENNEEPIF----MLPAGTSNIERNI 348

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +  +   +    T H  RH++AT LL+ G D+ +   +LGH  ++TT IY  +  K   
Sbjct: 349 EKWMQDAKITKHITYHCSRHTYATMLLTLGADIYTTSKLLGHSNVNTTSIYAKIVDKKKV 408

Query: 308 D 308
           +
Sbjct: 409 E 409


>gi|158425194|ref|YP_001526486.1| putative phage HP1 integrase [Azorhizobium caulinodans ORS 571]
 gi|158332083|dbj|BAF89568.1| putative phage HP1 integrase [Azorhizobium caulinodans ORS 571]
          Length = 373

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 89/250 (35%), Gaps = 21/250 (8%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            + ++    I  F++    ++  + ++ R L+ +   L+Y   R +  +   ++ ++   
Sbjct: 135 PVSRIDTDAIDGFVADCIAKRNSNGTVNRKLAILSKSLRYAFDRGLIPKMPKIDRKSEGV 194

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
                R L+E +   L+D           W    ++ ++  L   G+R SE   LTP+++
Sbjct: 195 GRF--RWLDEDEEKALLDTF-------RSWGKDDHAEVIETLIDTGMRPSELYRLTPRDV 245

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
                 + I                 KAIL+                     +  P +  
Sbjct: 246 DLKTGAIMIWMTKTDNPRTVYATKRVKAILQRRIGAVTA----------PTEKLFPYDNF 295

Query: 242 VFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
             +    + R +LG+        +  RH+ A+ L+  G  +  ++  LGH  +  T  Y 
Sbjct: 296 WMRHTWDRARLHLGMENDPHFVPYICRHTCASRLVQRGVPINVVKEWLGHTSIQMTMRYA 355

Query: 300 NVNSKNGGDW 309
            +  KN    
Sbjct: 356 FLAPKNLMSA 365


>gi|308513234|ref|YP_003933637.1| phage integrase family site-specific recombinase [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|307346940|gb|ADN43924.1| site-specific recombinase, phage integrase family [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 296

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 109/295 (36%), Gaps = 35/295 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +    ++K+ +++I  +  ++ + +  +        +++      +K+      +     
Sbjct: 1   MDILKKDKLGVRSIDSIKPSDAKEWAIRMSENGYAYQTINNYKRSLKASFYIAIQDDCVR 60

Query: 110 ESNI-LNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     ++ +   +++P+  L E+Q   L+         +     ++N   + +L   G
Sbjct: 61  KNPFDFQLKAVLDDDTVPKTVLTEEQEEKLL------AFAKADKTYSKNYDEILILLKTG 114

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAIL 211
           LRISE   LT  ++  +   + I                       R VP++    +A  
Sbjct: 115 LRISEFGGLTLPDLDFENRLVNIDHQLLRDTEIGYYIETPKTKSGERQVPMVEEAYQAFK 174

Query: 212 EYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTA 262
                   D  + I      LF   +  P     +   ++ L +         LP   T 
Sbjct: 175 RVLANRKNDKRVEIDGYSDFLFLNRKNYPKVASDYNGMMKGLVKKYNKYNEDKLP-HITP 233

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQ 316
           H+LRH+F T+  + G + +++Q I+GH  ++ T   Y +    +    M  +  +
Sbjct: 234 HSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMKRLNKE 288


>gi|108799889|ref|YP_640086.1| phage integrase [Mycobacterium sp. MCS]
 gi|119868999|ref|YP_938951.1| phage integrase family protein [Mycobacterium sp. KMS]
 gi|108770308|gb|ABG09030.1| phage integrase [Mycobacterium sp. MCS]
 gi|119695088|gb|ABL92161.1| phage integrase family protein [Mycobacterium sp. KMS]
          Length = 379

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 95/281 (33%), Gaps = 32/281 (11%)

Query: 51  AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE 110
                 +I  + + +L  +++   I + R + + D ++++  + ++  L    +  +   
Sbjct: 101 KHLEGARIGDKRLDRLKPSDVELLIVQLRGKNLSDSTVRQVYTVLRQALDVAVRDGLLAA 160

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
           +    ++    +    + L       L+D               R    + L+   GLR 
Sbjct: 161 NPASKVKRPGVARKEAKYLPAADVARLLDA----------AKGLRYYLGVVLMATTGLRR 210

Query: 171 SEALSLTPQNIMDDQSTLRIQG---------------KGDKIRIVPLLPSVRKAILEYYD 215
            E   L   ++  ++  L ++                     R VPL   V   +  +  
Sbjct: 211 GEVAGLLWSDVDLEKGELTVRHTLSRVDGKLVLTEPKTDRSRRRVPLHAGVVAQLKMHRT 270

Query: 216 LCPFDL-----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
               +             +     G  L+P    R +      +G+     AHT+RHS A
Sbjct: 271 QQLQERLAAGDQWRDTGAVLATEFGTLLDPRNLLRTVEIAAAKVGIE-DVGAHTMRHSAA 329

Query: 271 THLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
              L +G  +++   +LGH  ++ T  +Y + + +     +
Sbjct: 330 VAWLESGVHIKAAADLLGHSSIAITGDLYGHTSDETARAAV 370


>gi|327460361|gb|EGF06698.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK1057]
          Length = 356

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 110/326 (33%), Gaps = 45/326 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  +  +F  ++            +I +  +  +S  ++ AFI   R +   
Sbjct: 33  YSFTTLYEYLKEYDRFFNWVLESGITDASHIAEIPLSVLENMSKKDMEAFILYLRERPLL 92

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                   +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 93  NANTTQNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATKKKKETLAA 152

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA--------RNSAILYLLYGCGLRIS 171
           +  N   +     +    +  +      +              R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETEEFLQYIDTEYPKKLSNRALSSFNKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLF 230
           EA++L  ++I      + +  KG K   V +    +  + EY  +              F
Sbjct: 213 EAVNLDLKDINLKMMVIEVTRKGGKRDSVNVAAFAKPYLEEYLSIRIKRYKAEKTDTAFF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +        +  T H LRH+ AT L         +   L
Sbjct: 273 LTEYRGTPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH     T +YT++ +    + + ++
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNALDKL 356


>gi|291544270|emb|CBL17379.1| Site-specific recombinase XerD [Ruminococcus sp. 18P13]
          Length = 397

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 62/313 (19%), Positives = 115/313 (36%), Gaps = 45/313 (14%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-R 78
           +WL+ ++  + + + T  +Y    +  +I    Y EE      +R++    I+ + +   
Sbjct: 84  DWLEMIK--KNVEETTYGAYSMGIKSKII---PYFEEHHPGLLLREIKPKHIQDYYTYEL 138

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   ++    + I+  L++  K  +   +    +   KK   +  A  E +   L 
Sbjct: 139 TVRGVSANTVIHRHANIRKALQHAFKLGLIDTNPADRIERPKKEKFVGSAYEEDELNRLF 198

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----- 193
           + V          + A            GLR SEA+ L    I   + T+ I+       
Sbjct: 199 EVVKGDPIELGVILGAFY----------GLRRSEAVGLKWDAIDFKKKTITIRHTVTQAT 248

Query: 194 ---------------GDKIRIVPLLPSVRKAILEY-------YDLCPFDLNLNIQLPLFR 231
                              R +PL+P   + +            LC           ++ 
Sbjct: 249 IDGKSKIIQKDRTKTKASYRSLPLVPPFEELLYRLKAEQELNRKLCGRSYCRQYTDYIYV 308

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
              G+ + PG   ++   +    G+      H LRHS A+ L +NG  L+ IQ  LGH  
Sbjct: 309 NEIGELVKPGYITQHFPLVLEKNGM-RKIRFHDLRHSCASLLYANGVSLKEIQEWLGHSD 367

Query: 292 LSTTQ-IYTNVNS 303
           +STT  IYT++N 
Sbjct: 368 ISTTSNIYTHLNF 380


>gi|326797743|ref|YP_004315562.1| integrase family protein [Sphingobacterium sp. 21]
 gi|326548507|gb|ADZ76892.1| integrase family protein [Sphingobacterium sp. 21]
          Length = 413

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 53/294 (18%), Positives = 105/294 (35%), Gaps = 24/294 (8%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRS 87
           +G    TL+ Y         +L     E  T   IR + +  I  +    R+  +    S
Sbjct: 126 KGFKPNTLKGYNTSVAHLTSYLEKCHGE--TDIEIRHIDHAFITGYEFFLRSDMECSAVS 183

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             + +  ++  +      +  TE+  +  +  K        L   +    +D +      
Sbjct: 184 AAKYMKHLRKIINQCLAHRWITENPFVFYKT-KAKPREKEFLTPDE----LDRIAQKEFS 238

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLT----PQNIMDDQSTLRIQGKGDKIRIVPLL 203
            T+    R+  I       GL  ++   L      + I      L  + K +    +PLL
Sbjct: 239 ITRLSHVRD--IFVFCCYTGLSYADVRKLQKTGIAKGIDGRLWVLTSREKTETSSNIPLL 296

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           P   + I  Y          +    + +G+    L+      Y++++    G+    T H
Sbjct: 297 PQALEIIGRY---------ADYPPCVAKGMVLPVLSNQKMNSYLKEIADLCGITKKLTFH 347

Query: 264 TLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             RH+FAT + L+N   + ++  +LGH  + TTQ Y  +        M ++ ++
Sbjct: 348 MARHTFATTVTLANNVPIETVSKMLGHTNIKTTQHYAKLLDTRISSDMEKLKEK 401


>gi|322383343|ref|ZP_08057137.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321152377|gb|EFX45182.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 413

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 91/280 (32%), Gaps = 30/280 (10%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           I  ++  + +  +     +   + ++  +    +   +   + KI       +    K+ 
Sbjct: 126 ISIITAKQYQHALLDLHDKGYSNNTIVSAHQTGRMIFQRAIELKIIKNDPTSSAVIPKRQ 185

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDA--RNSAILYLLYGCGLRISEALSLTPQN 180
            ++     EK+    ++   L    +T       R+ AI   L   G+R+ E  +L   +
Sbjct: 186 RTIEDLETEKEIPKYMEKEELALFLQTAKEKGLDRDYAIFLTLAYTGMRVGELCALKWSD 245

Query: 181 IMDDQSTLRIQGK------------------GDKIRIVPLLPSVRKAILE-----YYDLC 217
           I   + T+ I                         R++ +   V   + +          
Sbjct: 246 IDFSEQTVSITKTYYNPNNNIKNYTLLTPKTKSSKRVIIVDKKVLDELEQLQAEQKRIKM 305

Query: 218 PFDLNLNIQLPLFRGIRG----KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            F    + +  +F          P  P +    + +L +  GL    T H+LRH+  + L
Sbjct: 306 FFRKTYHDKNFVFSQQGEENAGFPTYPKLVALRMTRLLKLAGLNTKLTPHSLRHTHTSLL 365

Query: 274 LSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMME 312
                 L  I   LGH    TT+ IY +V      +   +
Sbjct: 366 AEARVSLEQIMQRLGHRSDETTKNIYLHVTKPKKKEASQK 405


>gi|322391942|ref|ZP_08065406.1| phage integrase family integrase/recombinase [Streptococcus peroris
           ATCC 700780]
 gi|321145168|gb|EFX40565.1| phage integrase family integrase/recombinase [Streptococcus peroris
           ATCC 700780]
          Length = 356

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 120/326 (36%), Gaps = 51/326 (15%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  +  +F  ++         T  KI +  +  ++  ++ +FI   R +   
Sbjct: 33  YSFTTLYEYLKEYDRFFTWVMESGISNADTMAKIPLDVLEHMTKKDMESFILYLRERPLL 92

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKR--------------------KITTESNIL 114
                   +   ++ R+LS + S  KYL +                     K   E+   
Sbjct: 93  NANTTKNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATKKKKETLAA 152

Query: 115 NMRNLKKSNSLPR----ALN--EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
              N+K+   L       LN  +++    + N  L + ++ K    R+ AI+ LL   G+
Sbjct: 153 RAENIKQKLFLGDETEGFLNYIDEEYPQTLSNRALSSFNKNK---ERDLAIIALLLASGV 209

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQL 227
           R+SEA++L  +++      + +  KG K   V +    +  + +Y  +            
Sbjct: 210 RLSEAVNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLEQYLAIRDKRYKTEKTDT 269

Query: 228 PLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
            LF  +       ++    ++ + +        +  T H LRH+ AT L         + 
Sbjct: 270 ALFLTLYRGVPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVS 327

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWM 310
             LGH     T +YT++ +    + +
Sbjct: 328 HQLGHASTQVTDLYTHIVNDEQKNAL 353


>gi|307566493|ref|ZP_07628924.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307344804|gb|EFN90210.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 439

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 58/285 (20%), Positives = 103/285 (36%), Gaps = 25/285 (8%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           K T++++    + F +FL          +   +      R F+   R     + ++   L
Sbjct: 130 KATVRAFRDSRKNFALFLKTRGNGDSLPKEADKDLIEHYRLFM--LRDLGNKESTVSNRL 187

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +   ++   + +   E     +        +     E+ ALT  D   L +    + +
Sbjct: 188 RHLHQVIRKALQERYIREDPFEQID-------IETPTYERNALTSDDLHKLLSYRPHRSV 240

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           D     I  L    GL  S+   L   ++    D +  + +     + R +  L  + + 
Sbjct: 241 DNHCRLIFLLGCFTGLAFSDLKKLRMDDVYTFGDGRRYISLCRTKTQNRSIVPLLPIAEE 300

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS--TTAHTLRH 267
           IL        +  L  + P              F R IR +    GLP     T+HT RH
Sbjct: 301 ILTIVSDGRKEGLLFREFP----------TNSHFNRKIRDIIIKAGLPPHTEATSHTARH 350

Query: 268 SFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +FAT   L NG  + ++  ILGH  +STT++Y  V+       M 
Sbjct: 351 TFATTICLENGLPIETVSKILGHRFISTTELYAKVSKSKIAREMQ 395


>gi|306817826|ref|ZP_07451565.1| phage integrase family protein [Mobiluncus mulieris ATCC 35239]
 gi|304649305|gb|EFM46591.1| phage integrase family protein [Mobiluncus mulieris ATCC 35239]
          Length = 368

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 58/313 (18%), Positives = 108/313 (34%), Gaps = 46/313 (14%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRAFISK 77
           Q++L++       +  T+  Y           A Y   KI  QT IR L+   I  +++ 
Sbjct: 75  QSYLEHAAS--YATPGTIARYRN-------MAASYIFPKIPPQTPIRALTRESIENYVTW 125

Query: 78  RRTQ------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-PRALN 130
            R +       +  R++KR ++ + +   Y  +      +    +R    +    P  L 
Sbjct: 126 LRAKPSRYGTSLKPRTIKRIVAFLSTLFNYQIEIGNLESNPARGIRIPNDAIPTQPVFLT 185

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            +Q   + DN                  ++  LY  GLR  EA +LTP ++     T+ +
Sbjct: 186 PQQVEKIADNC------------GYYGVLVRFLYATGLRFGEATALTPADVNVKTRTITV 233

Query: 191 QGKGDK-------------IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                +                      V K+++        +    +  P  +    +P
Sbjct: 234 SKAWKQGEKSSDFYLGSPKTDTSTRTVLVSKSVIALLKPLLVEDAPFLFHP--KTRPDRP 291

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
           L    F+    +      +      H LRHS  + L+  G  L  IQ  +GH  + TT  
Sbjct: 292 LRNKTFRNCAWKQAVE-NMDPRPRIHDLRHSHVSRLIQAGIPLPVIQKRVGHKDIQTTIN 350

Query: 297 IYTNVNSKNGGDW 309
           +Y ++  K+    
Sbjct: 351 VYGHITPKDARAA 363


>gi|213692031|ref|YP_002322617.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523492|gb|ACJ52239.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458143|dbj|BAJ68764.1| putative phage integrase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 391

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 61/284 (21%), Positives = 109/284 (38%), Gaps = 34/284 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
              Y EE+   + I  ++  E++A+IS       G  S++R    +    +   + K+  
Sbjct: 93  WRLYCEERWADRRIGTITRAEVQAWISDIIAS-AGAPSVRRPYQTMLGICRMAVRDKLIL 151

Query: 110 ESNILNMRNLKKSNSLPR--ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++   N+   K      R   L   + L   D          K + A   A++  L  CG
Sbjct: 152 DNPCENVELPKLPRRKSRRVYLTISRLLAFADEC-----SRGKHLGAERRALVLTLGFCG 206

Query: 168 LRISEALSLTPQNIMDDQSTLRIQG--------------KGDKIRIVPLLPSVRKAILEY 213
           LR  EA +L  +++   +  L + G              K  + R VP+   V +A+   
Sbjct: 207 LRWGEAAALKARDLDFGRGVLHVGGNLVYVGARWVEGTPKNSEERDVPMPLIVMEALKPM 266

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR---YIRQLRRYLGLPLS--TTAHTLRHS 268
                 D        +FR +RG P+      +   +       LG P     T H LRH+
Sbjct: 267 CGEREPDER------VFRDLRGGPIMKQSAAKTTGWWYHALVRLGWPKEEWPTPHDLRHT 320

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMM 311
            A+  +  G +++++Q +LGH   S T  +Y ++   +  D   
Sbjct: 321 AASLAVHAGANVKALQRMLGHKNASMTLDVYADLFDSDLMDVAR 364


>gi|315644195|ref|ZP_07897365.1| phage integrase family protein [Paenibacillus vortex V453]
 gi|315280570|gb|EFU43859.1| phage integrase family protein [Paenibacillus vortex V453]
          Length = 312

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 57/316 (18%), Positives = 131/316 (41%), Gaps = 20/316 (6%)

Query: 8   EIVSFELLKE--RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           E + + +LKE  + ++   L+ +  + + T+  Y     +F+ +          +     
Sbjct: 7   EKIGYRMLKEMSQLDFTLYLKQQE-MRQKTIAGYTAVINEFIQW------RDALLDQPEI 59

Query: 66  LSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           ++   I  + S  +T +K   +++ R L+ ++ +++YL+      E   +    L     
Sbjct: 60  VTQLHILEYKSYLKTIRKNHPKTVNRKLAALRKWIQYLQATGQLKEVIAVKDEALADIER 119

Query: 125 L--PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
              P+ L++ +     D         + ++  R+  ++YL+   GLR  E L+L   +I+
Sbjct: 120 WKDPKFLDKNEIR---DIRKGIEKEPSNFLRNRDRCMIYLMLYLGLRQEEMLNLELTDII 176

Query: 183 ---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
                Q  +  +GKG     + L  +  +  ++ +              LF   +     
Sbjct: 177 RTPGKQKVIIREGKGGFYGELALESTELRGAIDQWIAERAKSRFADSSYLFVSRKSAHAG 236

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                + I+++ +  G+    T H LRH+FA  ++   G+++  Q +L H   S+T+IYT
Sbjct: 237 KRAAVKMIKRVCKTSGVEF--TCHQLRHTFAKRIIDETGNIKKAQELLRHKHTSSTEIYT 294

Query: 300 NVNSKNGGDWMMEIYD 315
               +   + + ++ D
Sbjct: 295 RHRKEELNEVLRKLDD 310


>gi|116625838|ref|YP_827994.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229000|gb|ABJ87709.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 311

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 100/272 (36%), Gaps = 14/272 (5%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  + ++YE     F+ +                 S   +  +  +  ++ +   ++   
Sbjct: 32  SPASKRAYEFAIDDFVNWYCSEPR--------LAFSKRVVLRYRIELESRHLAPATINLR 83

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L+ ++          + +      +R +K +  +   L E          LL      + 
Sbjct: 84  LAAMRRLAFEAADTGLPSPELAAGIRRVKGAKRVGVRL-ENWLTAEQSRALLRAPDAQRL 142

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTL-RIQGKGDKIRIVPLLPSVRK 208
              R+ A+L L+ GCGLR  E  +L   +    +D S +  +  K   IR VP+   V+ 
Sbjct: 143 KGRRDRAMLALMLGCGLRRGEIAALRLDHLQQREDHSVIADLVDKAAHIRTVPVPGWVKA 202

Query: 209 AILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           A+ E+       D  L   +     + G  +   V    ++      G+    + H  R 
Sbjct: 203 AVDEWVTSAAITDGRLFRCVSRKESVWGSGITEKVIWHVVKAAAAAAGIAK-LSLHDCRR 261

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           + A    + GG+L  IQ +LGH  + TT+ Y 
Sbjct: 262 TCARLCHAAGGELEQIQFLLGHVSVETTERYL 293


>gi|227114983|ref|ZP_03828639.1| phage integrase family protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 328

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 89/236 (37%), Gaps = 33/236 (13%)

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  KI   ++ R LS  ++    L +       + + ++R  K S S    L + Q   L
Sbjct: 117 REAKISPTTVNRELSYFRALFNELARLGEWNAANPLESVRPYKTSESEMAFLQKDQIARL 176

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +       + +          I+ L    G R SEA  LT   +   + T   + KG + 
Sbjct: 177 LHECEASKAKDL-------LLIVKLCLSTGARWSEAEELTRFQLSPYRVTFT-KTKGKRN 228

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL- 256
           R VP+  ++  A+                  LF G               R+      + 
Sbjct: 229 RTVPISETLYNAL------------PRNNGRLFSGC----------YNAFRKAMERADIV 266

Query: 257 -PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            P    +H LRH+FA+H + NGG++  +Q ILGH  +  T  Y + +  +  D + 
Sbjct: 267 LPAGQCSHVLRHTFASHFMMNGGNILVLQRILGHTDIKMTMRYAHFSPNHLEDALR 322


>gi|228949788|ref|ZP_04111998.1| Integrase-recombinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228809846|gb|EEM56257.1| Integrase-recombinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 362

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 73/333 (21%), Positives = 122/333 (36%), Gaps = 34/333 (10%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF--------YTEEKITIQT 62
             +++    ++  N+  ++     T +SY  +   F   L          Y E K     
Sbjct: 35  DLDMIYHFIHYSTNIHKDKQRKNNTRKSYLREIMYFCKTLTEKAETFEISYEEIKQENSF 94

Query: 63  IRQLSYTEIRAFISK-------RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           ++ L    IR +          R  +     +L R L+ I SFL +L K +  +     +
Sbjct: 95  LKALKPWNIRKYNEWIKSVPYGRNNKPYAVATLARKLTIINSFLLHLYKNEYISIPLHEH 154

Query: 116 MRN--LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
           ++   ++ ++   R L   +   +++                N  I+ LL   GLRI E 
Sbjct: 155 LKKATVQVNDRPNRDLYYDEVQEILNYY-------KSKQQLFNYMIILLLVSTGLRIQEV 207

Query: 174 LSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPL 229
            +    ++   +    LR+ GKGDK R   + P + + I EY         LN     PL
Sbjct: 208 ANARMGDLFRAEGKLWLRVIGKGDKPREAYISPHLFECISEYRSRKGLKTQLNRLDNSPL 267

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLRHSFATHLLSNGGDLRSI 283
                 +  N       +  +     +P         TAHT RH FA     N  +L  I
Sbjct: 268 IVSNHLRKFNSTYLSNKVTSILSQARIPCVEQRENPITAHTFRHGFAIMAAENDVELLRI 327

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           Q  LGH   +TT+IY   + K   +  +   DQ
Sbjct: 328 QQTLGHASANTTKIYLEKHMKRKHNAALSFADQ 360


>gi|227537901|ref|ZP_03967950.1| integrase [Sphingobacterium spiritivorum ATCC 33300]
 gi|325953712|ref|YP_004237372.1| integrase [Weeksella virosa DSM 16922]
 gi|227242286|gb|EEI92301.1| integrase [Sphingobacterium spiritivorum ATCC 33300]
 gi|323436330|gb|ADX66794.1| integrase family protein [Weeksella virosa DSM 16922]
          Length = 416

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 63/313 (20%), Positives = 109/313 (34%), Gaps = 29/313 (9%)

Query: 14  LLKERQNWLQNLEIER----GLSKL-TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
             K  + +L +   E+    GL    T   Y+   +    F    T+   +  +   L+ 
Sbjct: 113 FFKFYEQFLSD--YEKKVNSGLRVNGTRSKYKILLKHLRNFA--LTKYGYSDVSFNDLTP 168

Query: 69  TEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
             ++ F    R  Q +   ++   + G  +  +    RK    +     +N KK      
Sbjct: 169 DFVQEFDYYLRDAQSLAHNTIWLYMIGFTTLCRLAMSRKHLAFNPFSEYKNTKKDKDR-G 227

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT---PQNIMDD 184
            L   +   LV      T +  K  D     +       GL  S+   L     Q+  DD
Sbjct: 228 YLLRNELEQLV------TFNCEKKKDELVKDLFVFSCFTGLSYSDMKGLRNSNIQDFFDD 281

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
              + ++ K        +L  + K I+E Y     D  +               +     
Sbjct: 282 NQWIIVRRKKTATSSNVMLLDIPKMIIEKYAGFAKDGKVFPV----PSNTICNDSLKRIS 337

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + I  L+         T H  RH+FAT  LS G  L S+  +LGH  ++TTQIY  + ++
Sbjct: 338 QLIDCLKE-----KKVTFHLARHTFATLFLSEGVPLESLSKMLGHKNIATTQIYAKILNE 392

Query: 305 NGGDWMMEIYDQT 317
             G  M ++  + 
Sbjct: 393 KVGKDMQKVSHKF 405


>gi|125717994|ref|YP_001035127.1| site-specific tyrosine recombinase XerS [Streptococcus sanguinis
           SK36]
 gi|166918906|sp|A3CN22|XERS_STRSV RecName: Full=Tyrosine recombinase xerS
 gi|125497911|gb|ABN44577.1| Tyrosine recombinase xerC [Streptococcus sanguinis SK36]
          Length = 356

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 110/326 (33%), Gaps = 45/326 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  +  +F  ++            +I +  +  +S  ++ AFI   R +   
Sbjct: 33  YSFTTLYEYLKEYDRFFNWVLESGITDASHIAEIPLSVLENMSKKDMEAFILYLRERPLL 92

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                   +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 93  NANTTQNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATKKKKETLAA 152

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA--------RNSAILYLLYGCGLRIS 171
           +  N   +     +    +  +      +              R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETEEFLQYIDTEYPKKLSNRALSSFNKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLF 230
           EA++L  ++I      + +  KG K   V +    +  + EY  +              F
Sbjct: 213 EAVNLDLKDINLKMMVIEVTRKGGKRDSVNVAAFAKPYLEEYLSIRIKRYKAEKTDTAFF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +        +  T H LRH+ AT L         +   L
Sbjct: 273 LTEYRGIPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH     T +YT++ +    + + ++
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNALDKL 356


>gi|62815912|emb|CAH17565.1| Transposase A [Staphylococcus aureus]
          Length = 361

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 66/362 (18%), Positives = 132/362 (36%), Gaps = 71/362 (19%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           ++L++    +++ L+   G S  T+++Y    +    F+            +  +++  +
Sbjct: 23  YQLIEPVMKFIKYLDNT-GKSPNTIKAYCYHLKLLYEFMEQRG------VILNDINFELL 75

Query: 72  RAFISKRRTQKIGD-------------RSLKRSLSGIKSFLKYLKKRKITTESNI----- 113
             F+   R     +              ++   L+ + SFL YL +       ++     
Sbjct: 76  ADFVGWLRYPSASNVIDLQSKKAIREETTVNTILNVVMSFLDYLSRLGEFKSIDVFKQAK 135

Query: 114 -----------------LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
                             N+  L+      R L  K+   ++D               R+
Sbjct: 136 GRNFKGFLHHVNKGRYQKNVLKLRVKKKQIRTLRSKEVKQIIDAC----------HTKRD 185

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----------KGDKIRIVPLLPSV 206
             IL L+Y  GLRI E LSL  ++I+   + + +            K  K R + +   +
Sbjct: 186 KLILMLMYEGGLRIGEVLSLRLEDIVTWDNQIHLTPRDVNVNEAYIKLRKERTIHVSKEL 245

Query: 207 RKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
                +Y      +   +  +   L  G  GKPL        +R++ +  G+    T+H 
Sbjct: 246 MSLYTDYLIYEYSEELEHDYVFISLKEGYFGKPLKYQSVLGLVRRIVKRTGIEF--TSHM 303

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
           LRH+ AT L+  G D+  +Q  LGH  + TT   Y +++ ++    M   +++       
Sbjct: 304 LRHTHATQLIREGWDVAFVQKRLGHAHVQTTLNTYVHLSDQD----MKNEFNKYLERKEH 359

Query: 324 KD 325
           K 
Sbjct: 360 KK 361


>gi|322376633|ref|ZP_08051126.1| transposase [Streptococcus sp. M334]
 gi|321282440|gb|EFX59447.1| transposase [Streptococcus sp. M334]
          Length = 405

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 109/295 (36%), Gaps = 35/295 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +    ++K+ +++I  +  ++ + +  +        +++      +K+      +     
Sbjct: 110 MDILKKDKLGVRSIDSIKPSDAKEWAIRMSENGYAYQTINNYKRSLKASFYIAIQDDCVR 169

Query: 110 ESNI-LNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     ++ +   +++P+  L E+Q   L+         +     ++N   + +L   G
Sbjct: 170 KNPFDFQLKAVLDDDTVPKTVLTEEQEEKLL------AFAKADKTYSKNYDEILILLKTG 223

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAIL 211
           LRISE   LT  ++  +   + I                       R VP++    +A  
Sbjct: 224 LRISEFGGLTLPDLDFENRLVNIDHQLLRDTEIGYYIETPKTKSGERQVPMVEEAYQAFK 283

Query: 212 EYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTA 262
                   D  + I      LF   +  P     +   ++ L +         LP   T 
Sbjct: 284 RVLANRKNDKRVEIDGYSDFLFLNRKNYPKVASDYNGMMKGLVKKYNKYNEDKLP-HITP 342

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQ 316
           H+LRH+F T+  + G + +++Q I+GH  ++ T   Y +    +    M  +  +
Sbjct: 343 HSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMKRLNKE 397


>gi|322387158|ref|ZP_08060768.1| phage integrase family integrase/recombinase [Streptococcus
           infantis ATCC 700779]
 gi|321141687|gb|EFX37182.1| phage integrase family integrase/recombinase [Streptococcus
           infantis ATCC 700779]
          Length = 265

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 115/298 (38%), Gaps = 36/298 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++  +L+ + GL++ T++SY    R FL                 +L   ++  +    
Sbjct: 2   KDFELHLKKD-GLAENTVRSYLYGVRFFLENY--------------ELKMEDLFEYKGYL 46

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  +++   L G+  +L ++    +        ++ +K        L  +  ++  
Sbjct: 47  LDN-FKPKTVNLRLQGVNKYLVFIGHDDL-------KLKFVKVQQKP--FL--EDVISHA 94

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D + L  S +   I      +++ L   G R+SE + L  +++  +     I  KG KIR
Sbjct: 95  DYLFLKRSLKKDGILKW-HFVVWFLGATGARVSELIKLKVEHV--EIGYFDIYSKGGKIR 151

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            + +   +R + L +      +        LF     +P+      + ++       +  
Sbjct: 152 RLYIPKKLRNSCLSWL-----ESENRRSGYLFLNKFNEPITARGVAQQLKNYADKYKMNS 206

Query: 259 ST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                H+ RH FA + L+   D+  +  ++GH  + TT+IY    +    + + +I +
Sbjct: 207 KVVYPHSFRHLFAKNFLAKYNDIALLADLMGHESIETTRIYLRKTATEQQNIVDKIVN 264


>gi|307565482|ref|ZP_07627968.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345813|gb|EFN91164.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 410

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 65/285 (22%), Positives = 115/285 (40%), Gaps = 22/285 (7%)

Query: 32  SKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           SK +LQ Y    R F  FL + Y ++ I +         +   ++S          +  +
Sbjct: 129 SKDSLQKYSVLRRHFAEFLIYKYGKKDIGLAEFTPSIVQDFELYLST--AAGCAYNTSVK 186

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L  +K+   Y +KR        LN R   +  +    L +++ + + +  +     E  
Sbjct: 187 KLKALKTVTIYAQKRGYLLHDPFLNHRFHLEPVNR-GFLTDEEIMKIANKEIAIQRLEL- 244

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRK 208
               R+  I       GL   +  +LTP NI+  DD+  +  + +   +    LL  + K
Sbjct: 245 ---VRDVFIFSCF--TGLAYIDVSNLTPDNIVTLDDKLWIMTKRQKTSVETNVLLLDIPK 299

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           +I+  Y    +         LF       L       Y++++    G+  + T H  RH+
Sbjct: 300 SIIAKYSHKTYR-----DGKLFP-----ILTNQKTNAYLKEIADICGIKKNQTFHLARHT 349

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           FAT  LS G  + S+  +LGH  + TTQIY  + +K   D M ++
Sbjct: 350 FATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEDDMEQL 394


>gi|218263976|ref|ZP_03477907.1| hypothetical protein PRABACTJOHN_03597 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222387|gb|EEC95037.1| hypothetical protein PRABACTJOHN_03597 [Parabacteroides johnsonii
           DSM 18315]
          Length = 382

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 47/313 (15%), Positives = 118/313 (37%), Gaps = 32/313 (10%)

Query: 16  KERQNWL-QNLEIERG---LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           +   +WL  ++E  R     +  T ++Y         +L     +++ +  I +      
Sbjct: 81  RVFADWLADHIEGIRRNPSYAASTYRNYRSTVNVIKAYLQHLRRQRLLMSKIDKGFVLGF 140

Query: 72  RAFISKRRT--------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN---LK 120
             FI             +++   +L    S +   L    K  +   +   ++     + 
Sbjct: 141 IDFIEHTYRNTKSPDNPKEMSPHTLHLYQSTLVRMLNAAVKEGVLDRNPFYSLERKDRIG 200

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K  +    L +++ +   +   ++ + +         A L+  +  GLR S+  +LT ++
Sbjct: 201 KQQAEKEYLTKEELMAFAEAPTVNETTK--------RAFLFCCF-TGLRYSDVSALTWRD 251

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I    +   +  K  +     ++  + ++ +            N   P  +      L+ 
Sbjct: 252 IRQGDNGWMVSVKAMQKTGKQVVIPLNQSAISLLPDR------NGCKPSQKVFDMTCLS- 304

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               + ++++    G+    + HT RH+FA   L+ GGD+ ++  +LGH  +++TQ+Y +
Sbjct: 305 -SCNKCLKKIAAAAGIEKKISYHTSRHTFAVLALAAGGDIYTVGKLLGHTSINSTQVYAD 363

Query: 301 VNSKNGGDWMMEI 313
              +   + +  I
Sbjct: 364 AVMETKVEAISRI 376


>gi|86608861|ref|YP_477623.1| phage integrase family site specific recombinase [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557403|gb|ABD02360.1| site-specific recombinase, phage integrase family [Synechococcus
           sp. JA-2-3B'a(2-13)]
          Length = 330

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 73/320 (22%), Positives = 120/320 (37%), Gaps = 46/320 (14%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +LQ  E +R L+  + ++Y     QF          K     + Q+    +++F++  +
Sbjct: 31  QFLQ--ERQRDLAPASRRTYRIALEQFA---------KTCPVPLPQVQPAHVQSFLNSLK 79

Query: 80  TQK------------IGDRSLKRSLSGIKSFLKYLKKRKITTES-NILNMRNLKKSNSLP 126
            +                 +       ++ F ++  +R    +      +R       LP
Sbjct: 80  GRPFRNRSGQRIHPPASPATYNLKRLALQQFFEWASQRGYLQDPLPTQAIR----PARLP 135

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DD 184
             L       L+  VL    + +     R +A++ L+  CGLR  E L LT Q+     +
Sbjct: 136 ARLPRDLDRLLLQRVLQRAQNHS----LRYAALIRLMLECGLRAQELLDLTVQDFQISPE 191

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI------RGKP 237
            S L ++ GKG K R V +   + + + +Y              PLF         RG+P
Sbjct: 192 GSLLEVRCGKGSKPRAVAVGDPLSELLQQYLSRERGPCA--PTDPLFVSQSRCLAYRGRP 249

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L     +  + +L      P   T H  RHSFAT LL  G     IQ +LGH   + T  
Sbjct: 250 LTYDGLRHIVLKLTE--PEPGHQTPHQFRHSFATLLLDRGVAPEHIQHLLGHTTAAMTMR 307

Query: 298 YT-NVNSKNGGDWMMEIYDQ 316
           YT   N +       EI +Q
Sbjct: 308 YTQRANLRAAIARSREILNQ 327


>gi|330016038|ref|ZP_08308377.1| site-specific recombinase, phage integrase family [Klebsiella sp.
           MS 92-3]
 gi|328529758|gb|EGF56652.1| site-specific recombinase, phage integrase family [Klebsiella sp.
           MS 92-3]
          Length = 327

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 77/322 (23%), Positives = 125/322 (38%), Gaps = 58/322 (18%)

Query: 8   EIVSFELLKER----QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           E V+FE   +     + WL     +R LS+           Q    L    EE   I   
Sbjct: 34  EAVAFEKHTQFNHHTKEWLSKPTDKRHLSE---------LIQLWWNLKGKHEEHGRINRN 84

Query: 64  R--------------QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +              Q++   I  + + RR+Q I   ++ R L+ I      L + ++ +
Sbjct: 85  KLDVFCRITDDPCAFQITKALISQYYAARRSQGIKASTINRDLNSISGMFTALIEAELFS 144

Query: 110 -ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
            E  I   + LK+       L E +   L+             +D  N  I  L    G 
Sbjct: 145 GEHPIRGRKKLKEEVPETGYLTEDEIKHLLFK-----------LDGDNKKIAILCLSTGA 193

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
           R  EA  L  ++I+ ++ T  ++ K +K R VP+   V K I +                
Sbjct: 194 RWGEAARLKAEHIIQNRVTF-VKTKSNKQRTVPVSAEVAKLIADGK-------------- 238

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
             RG+     +   F++ +R++     LP     H LRHSFATH + NGG + ++Q ILG
Sbjct: 239 --RGLLFGKASYSDFRQILREV--KPDLPTGQATHALRHSFATHFMINGGSIITLQRILG 294

Query: 289 HFRLSTTQIYTNVNSKNGGDWM 310
           H R+  T  Y +   +   D +
Sbjct: 295 HARIEQTMAYAHFAPEYLQDAI 316


>gi|325271707|ref|ZP_08138195.1| Tn554 transposase A [Pseudomonas sp. TJI-51]
 gi|324103165|gb|EGC00524.1| Tn554 transposase A [Pseudomonas sp. TJI-51]
          Length = 376

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 57/352 (16%), Positives = 116/352 (32%), Gaps = 71/352 (20%)

Query: 12  FELLKERQNWLQNLEIERGL--SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            EL++    +L ++ + RG   S  T ++Y     +F  FL              +++  
Sbjct: 28  AELIESANRYLFHIAVVRGRTRSPATWRTYADHLYEFFSFLEE------NALFWTRVNQE 81

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI----LNMRNLK----- 120
            I  + +    + +   ++ + LS   +F  +  ++ +  +       + +   K     
Sbjct: 82  HIAVWRNSMLDRGLSRSTINKRLSTTSAFYTWCARQGLAEQLPFETQDVLVSKPKGFLAH 141

Query: 121 ----------------KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLY 164
                               LP+ L+  +A+  +  +    +            + YL+ 
Sbjct: 142 VDASGNRLQANELTLRTQQQLPKFLSIPEAVQFIGALSPRRT----------QLVAYLML 191

Query: 165 GCGLRISEALSLTPQ-----NIMDDQSTLRIQ-------GKGDKIRIVPLLPSVRKAILE 212
            CGLR  EA +L  +             +++         KG K R V +   +   + +
Sbjct: 192 LCGLRREEACALDVRVLPTPAGHSPSKAIKMTLDPSLTPTKGSKERWVMVPYDLAGHLFD 251

Query: 213 YYDL-------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           Y               +      LF    G  L+        ++     G+    T H L
Sbjct: 252 YMMRDRPKLAGMYHKRHGAETTRLFLTRDGAELSLDGLDVTFQRASAKSGV--KCTPHRL 309

Query: 266 RHSF-ATHLL----SNGGD--LRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           RH+F     L      G D  L  ++  LGH  ++TT++Y +       D +
Sbjct: 310 RHTFGTYEFLRMSERRGTDGALHWVRDRLGHSSITTTEVYVHAADLLKHDEV 361


>gi|290473457|ref|YP_003466324.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii
           SS-2004]
 gi|289172757|emb|CBJ79528.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii
           SS-2004]
          Length = 197

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 74/184 (40%), Gaps = 7/184 (3%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + + + +   +   +   T+ E       +  +LYL Y  GLR+SE  SL   +I     
Sbjct: 3   KYITQDEWNRVFSVLNNGTNKER------DQCLLYLTYIHGLRVSELTSLKVSDIDIAGK 56

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
           T+ I+  K       P+  + ++ IL++  +   +      L LF   +G  L+      
Sbjct: 57  TIYIKRLKNGFSTTHPISKTEKELILKWLKIRNNNSVYCASLWLFPSRKGGKLSRQWVHV 116

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            + +     GL +    H LRHS    L + G D R IQ  LGH  +  T  YT  N + 
Sbjct: 117 LMGRYGEQAGLSIRLHPHKLRHSCGFELANQGLDTRLIQDYLGHRNIRHTMHYTASNPER 176

Query: 306 GGDW 309
               
Sbjct: 177 FQKA 180


>gi|167752533|ref|ZP_02424660.1| hypothetical protein ALIPUT_00784 [Alistipes putredinis DSM 17216]
 gi|167762652|ref|ZP_02434779.1| hypothetical protein BACSTE_01009 [Bacteroides stercoris ATCC
           43183]
 gi|167659602|gb|EDS03732.1| hypothetical protein ALIPUT_00784 [Alistipes putredinis DSM 17216]
 gi|167699758|gb|EDS16337.1| hypothetical protein BACSTE_01009 [Bacteroides stercoris ATCC
           43183]
          Length = 409

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 115/287 (40%), Gaps = 25/287 (8%)

Query: 32  SKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K ++ +Y    R    F+   +    +    + +    E + +I   + + +   +++ 
Sbjct: 130 AKSSMSTYIYTRRYLGEFIQKRFKTNDVAFGQLNEHIPWEFQDYI--LKDKGLAVDTVRH 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L+ +K   +   K     +   +N +  +++   PRAL+ +    + D V+       +
Sbjct: 188 YLAILKKICRIAFKEGHAEKRYFVNFKLPQENRKPPRALSREDFEKIRDVVI----PPER 243

Query: 151 WIDARNSAILYLLYGCGLRISEALSLT----PQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
                   +       G+  ++A+S+T     ++   D     ++ K + +  V LLP  
Sbjct: 244 ITHNIARDLFLFACYTGVPYADAVSITGDNIYKDDKGDLWLKYLRKKNEYLARVKLLPEA 303

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              I +Y          N +  LF  I    +     +R+++ LR   G+      H  R
Sbjct: 304 IALIEKY--------RSNDREELFPMIHHPNM-----RRHMKGLRDLAGISCDLVYHMGR 350

Query: 267 HSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           H+F + + L  G  + +I  +LGH  L+TTQ+Y  V  K   + M +
Sbjct: 351 HTFGSLITLEAGVPIETISKMLGHTNLTTTQLYARVTPKKLFEDMDK 397


>gi|328946315|gb|EGG40459.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK1087]
          Length = 356

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 110/326 (33%), Gaps = 45/326 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  +  +F  ++            +I +  +  ++  ++ AFI   R +   
Sbjct: 33  YSFTTLYEYLKEYDRFFNWVLESGITDASHIAEIPLSILENMTKKDMEAFILYLRERPLL 92

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                   +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 93  NANTTQNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATKKKKETLAA 152

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA--------RNSAILYLLYGCGLRIS 171
           +  N   +     +    +  +      +              R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETEEFLQYIDTKYPKKLSNRALSSFNKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLF 230
           EA++L  ++I      + +  KG K   V +    +  + EY  +              F
Sbjct: 213 EAVNLDLKDINLKMMVIEVTRKGGKRDSVNVAAFAKSYLEEYLSIRSKRYKAEKTDTAFF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +        +  T H LRH+ AT L         +   L
Sbjct: 273 LTEYRGTPNRIDASSVEKMVAKYSE--SFKVRVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH     T +YT++ +    + + ++
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNALDKL 356


>gi|325687453|gb|EGD29474.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK72]
          Length = 356

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 109/326 (33%), Gaps = 45/326 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  +  +F  ++            +I +  +  +S  ++ AFI   R +   
Sbjct: 33  YSFTTLYEYLKEYDRFFNWVLESGITDASHIAEIPLSVLENMSKKDMEAFILYLRERPLL 92

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                   +   ++ R+LS + S  KYL +            RN+               
Sbjct: 93  NANTTQNGVSQTTINRTLSALSSLYKYLTEEVENEHGEPYFYRNVMKKVATKKKKETLAA 152

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA--------RNSAILYLLYGCGLRIS 171
           +  N   +     +    +  +      +              R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETEEFLQYIDTEYPKKLSNRALSSFNKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLF 230
           EA++L  ++I      + +  KG K   V +    +  + EY  +              F
Sbjct: 213 EAVNLDLKDINLKMMVIEVTRKGGKRDSVNVAAFAKPYLEEYLSIRIKRYKAEKTDTAFF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +        +  T H LRH+ AT L         +   L
Sbjct: 273 LTEYRGTPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH     T +YT++ +    + + ++
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNALDKL 356


>gi|47097559|ref|ZP_00235093.1| site-specific recombinase, phage integrase family, putative
           [Listeria monocytogenes str. 1/2a F6854]
 gi|254900896|ref|ZP_05260820.1| DNA integration/recombination/invertion protein [Listeria
           monocytogenes J0161]
 gi|47014070|gb|EAL05069.1| site-specific recombinase, phage integrase family, putative
           [Listeria monocytogenes str. 1/2a F6854]
          Length = 387

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 66/343 (19%), Positives = 126/343 (36%), Gaps = 50/343 (14%)

Query: 8   EIVSFELLKERQNW-LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           EI     +   + W L     +R L   T+  Y        +FL  +       + I ++
Sbjct: 59  EIKDMRFIDFVEKWRLNY--AKRELKGNTIDKYN-------LFLENWIIPYFERKKISKI 109

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           +  ++  +  + + + +G  +L+     I+S  KY     IT     L+++         
Sbjct: 110 TTMQLLDYFHEVQKKGVGPSALEGHHRVIRSLFKYATLWGITETDVSLSVKKPTYKVPEK 169

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
              N ++   L+D +        K +      ++ L   CGLR  E + LT +++  +++
Sbjct: 170 NIYNRREIEVLIDRI--------KILQKYQQVMIKLALYCGLRRGEVIGLTTKDMNYNKN 221

Query: 187 TLRIQG---------------KGDKIRIVPLLPSVRKAILEY-------------YDLCP 218
           T+ +                 K  + RIVP    + + I E                   
Sbjct: 222 TINVYRAVIKSASEGIKLDETKNKRKRIVPAPAGLMQEIKELAKEKQKNKDKLGLLWKGT 281

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL--STTAHTLRHSFATHLLSN 276
            DL+    + +F    G P  P    R   +             + H LRHS A+ LL  
Sbjct: 282 KDLDGKTVVLIFSHDDGTPFTPASVTRMFNRFLEKEENNDLTKISFHDLRHSAASFLLEQ 341

Query: 277 GGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTH 318
           G +++ IQ+ILGH  +  T   Y ++  ++G     + +D  +
Sbjct: 342 GINVKVIQNILGHSDIKVTLNTYAHIT-EDGYSEAAKTFDNFY 383


>gi|314935704|ref|ZP_07843056.1| prophage L54a, integrase [Staphylococcus hominis subsp. hominis
           C80]
 gi|313656269|gb|EFS20009.1| prophage L54a, integrase [Staphylococcus hominis subsp. hominis
           C80]
          Length = 405

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 78/353 (22%), Positives = 139/353 (39%), Gaps = 52/353 (14%)

Query: 2   EGNNLPEIV-SFELLKERQNWLQNLEIERGLSKLTLQS--YECDTRQFLIFLAFYTEEKI 58
           + N +P  + +         W +N ++  G  + T+++  Y       L  +     E I
Sbjct: 59  QNNKIPTTLKTLTFHAACDEWFENYKLTSGAKQSTIRAKTYR------LAHIKERINEDI 112

Query: 59  TIQTIRQLSYTEIRAFI-SKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNM 116
               + +++   I+ +I +  +   I   ++K ++S IKS LK+ +KR  I+  S I N+
Sbjct: 113 L---VDKMNAQVIQDYINTSMKENNIKHITIKVNVSLIKSVLKFAQKRYNISDISYIDNV 169

Query: 117 RNLKKSNSLPR-------ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--- 166
              KK+ +           L   +   L+D   L+    T        + +   Y     
Sbjct: 170 SLPKKAVTREEIKAKRENYLEMNEVHKLIDE--LNHKSSTSNKGYIKRSYMMTAYITEFQ 227

Query: 167 ---GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL--------------------- 202
              GLRI E L+L P+NI      + I G    I    +                     
Sbjct: 228 VLNGLRIGELLALQPENIDFKNKKIEIDGTIAWITKDGVRGFKDTTKTEASYRTISITTR 287

Query: 203 -LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
               +RK +LE      +D N   +  +F   +G P+        I+   + +G+    +
Sbjct: 288 SCEILRKVMLENKKSAKWDSNFKERNFIFTNSKGSPMPLSSINANIKNAAKNVGIEKDIS 347

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
            HT+RHS  + L   G  LR+I   +GH    TT QIY++V  +   D M+++
Sbjct: 348 THTMRHSHISLLSQLGVSLRAIMDRVGHKDYKTTLQIYSHVTEQMDKDMMIKL 400


>gi|532536|gb|AAB60031.1| ORF3 [Enterococcus faecalis]
 gi|1097930|prf||2114402AA ORF 3
          Length = 361

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 109/295 (36%), Gaps = 35/295 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +    ++K+ +++I  +  ++ + +  +        +++      +K+      +     
Sbjct: 66  MDILKKDKLGVRSIDSIKPSDAKEWAIRMSENGYAYQTINNYKRSLKASFYIAIQDDCVR 125

Query: 110 ESNI-LNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     ++ +   +++P+  L E+Q   L+         +     ++N   + +L   G
Sbjct: 126 KNPFDFQLKAVLDDDTVPKTVLTEEQEEKLL------AFAKADKTYSKNYDEILILLKTG 179

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAIL 211
           LRISE   LT  ++  +   + I                       R VP++    +A  
Sbjct: 180 LRISEFGGLTLPDLDFENRLVNIDHQLLRDTEIGYYIETPKTKSGERQVPMVEEAYQAFK 239

Query: 212 EYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTA 262
                   D  + I      LF   +  P     +   ++ L +         LP   T 
Sbjct: 240 RVLANRKNDKRVEIDGYSDFLFLNRKNYPKVASDYNGMMKGLVKKYNKYNEDKLP-HITP 298

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQ 316
           H+LRH+F T+  + G + +++Q I+GH  ++ T   Y +    +    M  +  +
Sbjct: 299 HSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMKRLNKE 353


>gi|303236998|ref|ZP_07323571.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302482807|gb|EFL45829.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 417

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 108/278 (38%), Gaps = 17/278 (6%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
                +FL     Y  + I +Q        ++  + +K +  K+        L+ + S L
Sbjct: 142 RKHLSEFLRC--RYHVDDIPVQKADTALIKDLEEYFAKEKGFKLNTS--AGYLTMLASLL 197

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           K L KR I      +   +++     PR +  ++   +       T +E +  +  +  +
Sbjct: 198 KDLHKRHIIDSYPFIG-HSIRWDVGTPRYITREEVNKI----AALTDNELQGYEQMSRDM 252

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDL 216
                  GL  ++   LT ++I+ +     I+    K   +  +PLLP     I  Y  +
Sbjct: 253 FLFSCYTGLSYTDVYHLTAEHIIHESDMDWIRKPRVKTGNVCHIPLLPEASAIIERYRGI 312

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LS 275
                           I G          +++++ R  G+  + T H  RH+FA+ + LS
Sbjct: 313 HTRAFRHEPPKGYLLPIPGC----DTLNIHLKKIARLCGIQKTLTYHMARHTFASQMTLS 368

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G  + S+  +LGH ++ TTQ+Y   + +     + +I
Sbjct: 369 EGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKI 406


>gi|319894064|gb|ADV76315.1| hypothetical protein [Streptococcus sp. F.MI.5]
          Length = 405

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 109/295 (36%), Gaps = 35/295 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +    ++K+ +++I  +  ++ + +  +        +++      +K+      +     
Sbjct: 110 MDILKKDKLGVRSIDSIKPSDAKEWAIRMSENGYAYQTINNYKRSLKAPFYIAIQGDCVR 169

Query: 110 ESNI-LNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     ++ +   +++P+  L E+Q   L+         +     ++N   + +L   G
Sbjct: 170 KNPFDFQLKAVLDDDTVPKTVLTEEQEEKLL------AFAKADKTYSKNYDEILILLKTG 223

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAIL 211
           LRISE   LT  ++  +   + I                       R VP++    +A  
Sbjct: 224 LRISEFGGLTLPDLDFENRLVNIDHQLLRDTEIGYYIETPKTKSGERQVPMVEEAYQAFK 283

Query: 212 EYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTA 262
                   D  + I      LF   +  P     +   ++ L +         LP   T 
Sbjct: 284 RVLANRKNDKRVEIDGYSDFLFLNRKNYPKVASDYNGMMKGLVKKYNKYNEDKLP-HITP 342

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQ 316
           H+LRH+F T+  + G + +++Q I+GH  ++ T   Y +    +    M  +  +
Sbjct: 343 HSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMKRLNKE 397


>gi|302343665|ref|YP_003808194.1| integrase family protein [Desulfarculus baarsii DSM 2075]
 gi|301640278|gb|ADK85600.1| integrase family protein [Desulfarculus baarsii DSM 2075]
          Length = 397

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/316 (16%), Positives = 114/316 (36%), Gaps = 38/316 (12%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T ++     + +   LA +   +   + + Q++   I+ F+ ++    +   +++  L
Sbjct: 75  PATCKA--STLKDYQRLLANHILRRFGSKPVDQITRLMIKDFLLQKGKSGLAGSTVRHML 132

Query: 93  SGIKSFLKYLKKRKITTESNI----LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           + I   +    +      +        +  +K   +    L  ++   L++ V     + 
Sbjct: 133 NVISGVMTRAVEAGYIAHNPGQRMGRGVIRIKDRKADIEPLTTQELDHLLEVVRDRFPNA 192

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----------KGDKIR 198
                     ++  L   G+R+ EA  L   +I      + I+           K  K R
Sbjct: 193 FP--------MILTLARTGMRLGEARGLEWGDIDFRGGFIMIRRGVSRERMETPKSGKGR 244

Query: 199 IVPLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIRQ-LRRY 253
            V +   +   +L+       +        +   +F    GKP++   F+  I      Y
Sbjct: 245 RVDMSRQLAAVLLDLRARRKREALAKGWGKVPDRVFLSAEGKPVHDYHFRNRIWYKALEY 304

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDWMME 312
            GL      H LRH+FA+ L+ NG  L  ++  LGH  +S T   Y ++      + + +
Sbjct: 305 AGL-RRVRIHDLRHTFASLLIQNGESLAYVRDQLGHCSISLTVDTYGHLAPDGNRNAVDK 363

Query: 313 IYDQ-------THPSI 321
           + +        THP+ 
Sbjct: 364 LDNHSLTPSLFTHPAA 379


>gi|289647619|ref|ZP_06478962.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 336

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 56/320 (17%), Positives = 118/320 (36%), Gaps = 44/320 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q WL+ L    G +  TL++Y      +L+       E         +++ ++  +I +
Sbjct: 17  VQEWLE-LLGNLGRAPATLEAYGRGLAHYLLHCEASGLEA------ESITFEQVTLYIRR 69

Query: 78  R---RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN---------------- 118
               +   + + +L + L+ I+ +  +L  +    ++ +   ++                
Sbjct: 70  LLPGQENAVANSTLHQRLTAIRLWYDHLVFQGRCAQNPVPRGQHGRLCQIPGHSGFVRGL 129

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           + +   LP    ++Q    +      +         R+  +L L Y   LR +E ++L  
Sbjct: 130 VPRLIKLPDIPTDEQWRYFLRIAARSS--------IRDRLMLSLAYCGALRRAELVALRI 181

Query: 179 QNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG--- 232
           +++      + ++    KG + R+V   P +   +  +       L    +  LFR    
Sbjct: 182 EDLDLAHRLISVRAETTKGRRSRVVCYSPDIAPILGTHLHA--LRLAGWSKGALFRSESD 239

Query: 233 -IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
             RG  L    + + + +  R   L    + HT RH   THL   G  L  + +  GH  
Sbjct: 240 RNRGSALTRWTWSKTVERWARDSNLSC-LSTHTFRHLRLTHLARAGWKLHELTAYAGHRD 298

Query: 292 LSTTQIYTNVNSKNGGDWMM 311
             TT IY +++  +    M 
Sbjct: 299 PKTTLIYVHLSGADLTAKMA 318


>gi|289625659|ref|ZP_06458613.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|330870470|gb|EGH05179.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 336

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 56/320 (17%), Positives = 118/320 (36%), Gaps = 44/320 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q WL+ L    G +  TL++Y      +L+       E         +++ ++  +I +
Sbjct: 17  VQEWLE-LLGNLGRAPATLEAYGRGLAHYLLHCEASGLEA------ESITFEQVTLYIRR 69

Query: 78  R---RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN---------------- 118
               +   + + +L + L+ I+ +  +L  +    ++ +   ++                
Sbjct: 70  LLPGQENAVANSTLHQRLTAIRLWYDHLVFQGRCAQNPVPRGQHGRLCQIPGHSGFVRGL 129

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           + +   LP    ++Q    +      +         R+  +L L Y   LR +E ++L  
Sbjct: 130 VPRLIKLPDIPTDEQWRYFLRIAARSS--------IRDRLMLSLAYCGALRRAELVALRI 181

Query: 179 QNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG--- 232
           +++      + ++    KG + R+V   P +   +  +       L    +  LFR    
Sbjct: 182 EDLDLAHRLISVRAETTKGRRSRVVCYSPDIAPILGTHLHA--LRLAGWSKGALFRSESD 239

Query: 233 -IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
             RG  L    + + + +  R   L    + HT RH   THL   G  L  + +  GH  
Sbjct: 240 RNRGSALTRWTWSKTVERWARDSNLSC-LSTHTFRHLRLTHLARAGWKLHELTAYAGHRD 298

Query: 292 LSTTQIYTNVNSKNGGDWMM 311
             TT IY +++  +    M 
Sbjct: 299 PKTTLIYVHLSGADLTAKMA 318


>gi|317505556|ref|ZP_07963469.1| integrase [Prevotella salivae DSM 15606]
 gi|315663327|gb|EFV03081.1| integrase [Prevotella salivae DSM 15606]
          Length = 406

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 62/319 (19%), Positives = 131/319 (41%), Gaps = 31/319 (9%)

Query: 14  LLKERQNWL----QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLS 67
           LL+    +L    + + I+R L    L++Y+      L  L  Y ++K  +  I   QL 
Sbjct: 110 LLESFGEYLTQTKERIGIDRALKTFKLRTYQ------LSLLREYVQKKHKVSDIPLSQLD 163

Query: 68  YTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
            T I  F       +++   S+  ++S +++ ++   K+ +      L   + ++    P
Sbjct: 164 NTFIEGFEYYLTIDRRLKRSSISSTVSTLQTIVRMAVKKGVLDFYPFLGY-SYERPKGEP 222

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R++ +++   +++  +   ++           +       GL IS+  +L  +NI+ ++ 
Sbjct: 223 RSITKEELERIIELKIEWENYRIV------RDLFVFSCFTGLAISDVRNLREENIVLEEG 276

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            L I+G+  K +    +  +  A                 +P             +    
Sbjct: 277 ELCIKGRRMKTKTPYRVQVLPPAWAIMERYRGKRAGFVFDVP----------TTDIILNG 326

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +  ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQ+Y  V+S+ 
Sbjct: 327 MHHIQRNIGMESPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSER 386

Query: 306 GGDWMMEIYDQTHPSITQK 324
               M  I  +   + T K
Sbjct: 387 IHRDMQAIQQRIQDTFTLK 405


>gi|301311317|ref|ZP_07217244.1| transposase [Bacteroides sp. 20_3]
 gi|300830403|gb|EFK61046.1| transposase [Bacteroides sp. 20_3]
          Length = 411

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/297 (17%), Positives = 112/297 (37%), Gaps = 28/297 (9%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLK 89
            S +T+  Y+   ++    +  Y  ++    T  +L+   IRAF    +T+  +   ++ 
Sbjct: 129 YSPVTINRYKNVVKKLQRLIPSYYGKE--DVTFHELTPEFIRAFDIYLKTEGGLCRNTIV 186

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R +   K F      ++   ++     + +++  + P  L   +  TL+         E 
Sbjct: 187 RYMKCFKKFTNMALAKEWMRKNPFYGYK-MEQDETDPVFLTYDELQTLMKKKFTIPRLEL 245

Query: 150 KWIDARNSAILYLLYGCGLRISEALSL--------TPQNIMDDQSTLRIQGKGDKIRIVP 201
                    I       GL  S+  +L           +    +  ++++ +     I  
Sbjct: 246 V------RDIFVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRIKLEHRRKASSISN 299

Query: 202 LLP-SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +    V  AILE Y   P  +     LP+    +           Y++++  + G+  + 
Sbjct: 300 IPLLPVPLAILEKYREHPVCIKKGCCLPVMCNQKM--------NSYLKEIADFCGIKKNL 351

Query: 261 TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           T H  RH+F T + L+N   L+ +  +LGH     TQ Y  V + +  + M  + ++
Sbjct: 352 TTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNNVKER 408


>gi|291542827|emb|CBL15937.1| Site-specific recombinase XerD [Ruminococcus bromii L2-63]
          Length = 397

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 60/313 (19%), Positives = 113/313 (36%), Gaps = 45/313 (14%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-R 78
           +WL     ++ + + T  +Y    +  +I    Y EE      + +++   I+ + +   
Sbjct: 84  DWLDM--TKKNVEETTYGAYSMTIKSKII---PYFEEHHPGLALCEVTPKHIQDYYTYEL 138

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   ++    + I+  L++  K  +   +    +   KK   +     E +   L 
Sbjct: 139 TVRGVSANTVIHRHANIRKALQHAFKLGLIDTNPADRIERPKKEKFVGSVYEEYELNRLF 198

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----- 193
           + V          + A            GLR SEA+ L    I   + T+ I+       
Sbjct: 199 EIVKGDPIELGVILGAFY----------GLRRSEAVGLKWDAIDFKKKTITIRHTVTQAT 248

Query: 194 ---------------GDKIRIVPLLPSVRKAILEY-------YDLCPFDLNLNIQLPLFR 231
                              R +PL+P   + +            LC           ++ 
Sbjct: 249 IDGKSKIIQKDRTKTKSSYRSLPLVPPFEELLHRLKAQQELNQKLCGRSYCKKYTGYIYV 308

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
              G+ + PG   ++   + +  G+      H LRHS A+ L +NG  L+ IQ  LGH  
Sbjct: 309 NEIGELVKPGYLTQHFPLILQKNGM-RKIRFHDLRHSCASLLYANGVSLKEIQEWLGHSD 367

Query: 292 LSTTQ-IYTNVNS 303
           +STT  IYT++N 
Sbjct: 368 ISTTSNIYTHLNF 380


>gi|304382841|ref|ZP_07365324.1| integrase [Prevotella marshii DSM 16973]
 gi|304336026|gb|EFM02273.1| integrase [Prevotella marshii DSM 16973]
          Length = 392

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/293 (16%), Positives = 101/293 (34%), Gaps = 26/293 (8%)

Query: 32  SKLTLQSY---ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           S  TL +Y       RQ  +F+    +  I + T   L+      +    + +     S 
Sbjct: 117 STRTLSTYQTCRSYHRQLELFVESKGDSDIPLTT---LTMEFFEDYRIHFKRKGYALSST 173

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           K++L  +   +     ++    +     +  +    + R L++     L+   L +   E
Sbjct: 174 KQNLFWLSRLMYRAVSQQTIRYNPFEEAKYERVERKI-RCLSKTDIARLLAMPLQNEQAE 232

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----QGKGDKIRIVPLLP 204
                     +       GL  ++   L   +I  + + +R     + K     I PL P
Sbjct: 233 ------FVRRLFLFSVFTGLAFADVSKLRYCDIQTNNAGIRYIRQDRKKTGVESITPLHP 286

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
              + +  Y        +     P+F       ++      +++ +    G+    + H 
Sbjct: 287 IAEQILSLY-----PLKDKKEDSPIFATS----MSRIQIGMHLKAIGLACGIRQPLSFHV 337

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            RHSF T  L  G  + SI  ++GH  +++TQIY  +        M  + +  
Sbjct: 338 GRHSFGTLTLEAGVPIESIAKMMGHASIASTQIYAQITDSKISRDMDRLIESY 390


>gi|237722683|ref|ZP_04553164.1| mobilizable transposon [Bacteroides sp. 2_2_4]
 gi|229448493|gb|EEO54284.1| mobilizable transposon [Bacteroides sp. 2_2_4]
          Length = 386

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 61/317 (19%), Positives = 111/317 (35%), Gaps = 44/317 (13%)

Query: 15  LKERQNWLQNLE---IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            KE   +L+       ER  +  +  ++    R  L +L  Y +EK T + I        
Sbjct: 86  FKEDTPFLEYYRKMVEERHKNPESDGNWGNW-RSCLRYLEIYCDEKTTFKDITPEFINGF 144

Query: 72  RAFI------SKRRT---------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           + F+      + +RT         Q +   S     + +++ +      +I   + +  +
Sbjct: 145 KDFLNNVEKDTHKRTGPRRERDVFQGLSQNSKVSYFNKLRACINQAYDERIIPVNPLRGI 204

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              K +      L  ++   L        +   ++   + + +   L   GLR S+   L
Sbjct: 205 EGFKAAEVKRDYLTLEEVKQL-------AATPCRYPILKRAFLFSCL--TGLRKSDIQKL 255

Query: 177 TPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
           T   +       RI   Q K      + +     K + E           N +  +F G 
Sbjct: 256 TWSEVQKFGDYTRIVFKQKKTGGQEYLDISSQAEKYLGE---------RGNPEDLVFTGF 306

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
                     QR          +  + T H  RH+FA  +L  G D+ ++  +LGH  L+
Sbjct: 307 TYGAWTSLELQR----WSMAANINKNLTFHCGRHTFAVLMLDLGADIYTVSKLLGHKELA 362

Query: 294 TTQIYTNVNSKNGGDWM 310
           TTQIY  V  KN  + +
Sbjct: 363 TTQIYAKVLDKNKQNAV 379


>gi|217388371|ref|YP_002333400.1| intergrase [Enterococcus faecalis]
 gi|260559874|ref|ZP_05832053.1| integrase [Enterococcus faecium C68]
 gi|8100684|gb|AAF72368.1|AF192329_29 integrase [Enterococcus faecalis]
 gi|3243185|gb|AAC34799.1| integrase [Enterococcus faecium]
 gi|80973251|gb|ABB53357.1| Int [Eggerthella lenta]
 gi|80973262|gb|ABB53367.1| Int [Clostridium sp. MLG245]
 gi|80973273|gb|ABB53377.1| Int [Enterococcus faecium]
 gi|216409913|dbj|BAH02348.1| int [Enterococcus faecalis]
 gi|260074098|gb|EEW62421.1| integrase [Enterococcus faecium C68]
          Length = 397

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/294 (16%), Positives = 109/294 (37%), Gaps = 34/294 (11%)

Query: 48  IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI 107
             +    ++++    I  +  ++ + +  + + + +  +++      +K+      +   
Sbjct: 108 RLMRILEQDRLGSCPIDSVKLSDAKEWALRMKEKGLSYKTINNDKRSLKAAFYTAIQDDC 167

Query: 108 TTESNI-LNMRNLKKSNSLPRA-LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
             ++     + ++   ++ P+  L   Q     +   L      K       AI+ LL G
Sbjct: 168 IRKNPFDFQLSDVLDDDTEPKVPLTPAQ-----EESFLSFIQGDKVYQKHYDAIVILL-G 221

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQG----------------KGDKIRIVPLLPSVRKA 209
            GLRISE   LT +++  +   + +                      +R +P+   V +A
Sbjct: 222 TGLRISELCGLTDKDLDFENRVIIVSHQLLRNTGVGYYIDEPKTQSGVRKIPMNEEVYQA 281

Query: 210 ILEYYDLCPFDLNL---NIQLPLFRGIRGKPLNP----GVFQRYIRQLRR--YLGLPLST 260
                                 LF    G P+      G+F R +++  +     LP +T
Sbjct: 282 FQRVIKNRKGAKPFIIDGYANFLFLKQNGYPMTAVDYGGMFGRLVKKYNKSHEEALPKTT 341

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           T H +RH+F T L + G + +++Q I+GH  ++ T   Y +    +    M  +
Sbjct: 342 TPHAMRHTFCTRLANAGMNPKALQYIMGHSNITMTLNYYAHATFDSARAEMERL 395


>gi|167463322|ref|ZP_02328411.1| integrase [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 407

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 91/280 (32%), Gaps = 30/280 (10%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           I  ++  + +  +     +   + ++  +    +   +   + KI       +    K+ 
Sbjct: 120 ISIITAKQYQHALLDLHDKGYSNNTIVSAHQTGRMIFQRAIELKIIKNDPTSSAVIPKRQ 179

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDA--RNSAILYLLYGCGLRISEALSLTPQN 180
            ++     EK+    ++   L    +T       R+ AI   L   G+R+ E  +L   +
Sbjct: 180 RTIEDLETEKEIPKYMEKEELALFLQTAKEKGLDRDYAIFLTLAYTGMRVGELCALKWSD 239

Query: 181 IMDDQSTLRIQGK------------------GDKIRIVPLLPSVRKAILE-----YYDLC 217
           I   + T+ I                         R++ +   V   + +          
Sbjct: 240 IDFSEQTVSITKTYYNPNNNIKNYTLLTPKTKSSKRVIIVDKKVLDELEQLQAEQKRIKM 299

Query: 218 PFDLNLNIQLPLFRGIRG----KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            F    + +  +F          P  P +    + +L +  GL    T H+LRH+  + L
Sbjct: 300 FFRKTYHDKNFVFSQQGEENAGFPTYPKLVALRMTRLLKLAGLNTKLTPHSLRHTHTSLL 359

Query: 274 LSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMME 312
                 L  I   LGH    TT+ IY +V      +   +
Sbjct: 360 AEARVSLEQIMQRLGHRSDETTKNIYLHVTKPKKKEASQK 399


>gi|331269369|ref|YP_004395861.1| phage integrase family site specific recombinase [Clostridium
           botulinum BKT015925]
 gi|329125919|gb|AEB75864.1| phage integrase family site specific recombinase [Clostridium
           botulinum BKT015925]
          Length = 357

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 63/302 (20%), Positives = 126/302 (41%), Gaps = 38/302 (12%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L ++ + +     T++SY+    +F         + +  + I+++   +I++ + K   
Sbjct: 77  YLDHITLYKEY--HTVKSYKNCFSKF---------KDLNNKRIKEIKKHDIQSIVDKLLK 125

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLK-KSNSLPRALNEKQALTLV 138
           + +   ++K+ +  +  F  Y+K    +  E   +N++  K K  S   AL +KQ   L+
Sbjct: 126 EHLKYSTVKKYVGILNMFFIYVKDDLNLIFELPTVNIKIPKEKEYSNKIALTKKQLNKLL 185

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                      +  D +   + ++    G+R+ E L LT  +I   +S++ +  +   ++
Sbjct: 186 ----------KELQDNKYYMVAFIAANTGMRLGEVLGLTWDSIDFKRSSITVNKQWKVLK 235

Query: 199 IVPLLPSVRKAILEYYDL------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ-LR 251
                    K+   Y  +           N     P     R  P N     +Y+   L+
Sbjct: 236 TRKSGFGSLKSKNSYRTIPLSPNTLKELKNYKKNNPTDINNRVTPFNASSIDKYLNPKLK 295

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+    T H LRH++AT L+SNG D ++   ILGH    T +IY++V      D M 
Sbjct: 296 ELAGI----TMHELRHTYATALISNGVDFKTAAKILGHTVEMTMKIYSHVTD----DMMK 347

Query: 312 EI 313
           + 
Sbjct: 348 KA 349


>gi|300863537|ref|ZP_07108487.1| Tyrosine recombinase XerC [Oscillatoria sp. PCC 6506]
 gi|300338462|emb|CBN53629.1| Tyrosine recombinase XerC [Oscillatoria sp. PCC 6506]
          Length = 304

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 57/307 (18%), Positives = 104/307 (33%), Gaps = 17/307 (5%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++  L +  + +L       GLS  T +SYE      L               I  +S  
Sbjct: 1   MTVTLARLAREFLDRP----GLSLSTQRSYESTLMPLLGQWGRL--------PIEIISRQ 48

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +  ++       +   +  R  + I++ L +  ++   T + I  ++  K         
Sbjct: 49  LVLDYLRSLTH--LSITTHHRHQAIIQALLNFGVEQGYLTVNPIAGLKQRKLD-PEKGEC 105

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +    +  +    L   +E    D R  AI+ LL+  G RI E L+L  + I       +
Sbjct: 106 STDAVIRYLSAEQLSILYELLVPDVRLHAIVRLLHRTGARIGELLTLDLEGIDLQLQKFQ 165

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR-GIRGKPLNPGVFQRYIR 248
           + GKG K+R           +  Y           +         R   L+        +
Sbjct: 166 VMGKGKKLRWCFYSEDAASIVNNYIKYYRDLGTPALFTAQNPFNQRVTRLSYQQVYCCWQ 225

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                  L      H LRH+FAT  +     L  +++++GH  + TT  Y  V S    +
Sbjct: 226 SFTEKSPLLQGIRLHDLRHTFATERVGLMA-LEELRALMGHENIQTTLRYQKVTSLRAEE 284

Query: 309 WMMEIYD 315
              +  +
Sbjct: 285 VARDALN 291


>gi|15923046|ref|NP_370580.1| transposase A [Staphylococcus aureus subsp. aureus Mu50]
 gi|15924649|ref|NP_372183.1| transposase A [Staphylococcus aureus subsp. aureus Mu50]
 gi|15925759|ref|NP_373292.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|15926488|ref|NP_374021.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|15927238|ref|NP_374771.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|15927727|ref|NP_375260.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp.
           aureus N315]
 gi|15928181|ref|NP_375714.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp.
           aureus N315]
 gi|49482302|ref|YP_039526.1| transposase A 1 [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49483903|ref|YP_041127.1| transposase A 2 [Staphylococcus aureus subsp. aureus MRSA252]
 gi|57865838|ref|YP_190048.1| transposase A [Staphylococcus epidermidis RP62A]
 gi|57867121|ref|YP_188798.1| Tn554, transposase A [Staphylococcus epidermidis RP62A]
 gi|57867260|ref|YP_188919.1| Tn554, transposase A [Staphylococcus epidermidis RP62A]
 gi|148266488|ref|YP_001245431.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|148268140|ref|YP_001247083.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150392521|ref|YP_001315196.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150394207|ref|YP_001316882.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156978386|ref|YP_001440645.1| transposase A [Staphylococcus aureus subsp. aureus Mu3]
 gi|156979977|ref|YP_001442236.1| transposase A [Staphylococcus aureus subsp. aureus Mu3]
 gi|221141569|ref|ZP_03566062.1| transposase A [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|254663984|ref|ZP_05143456.1| transposase A [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|255006445|ref|ZP_05145046.2| transposase A [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257428442|ref|ZP_05604840.1| transposase A, tpnA [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431611|ref|ZP_05607979.1| tnpA protein [Staphylococcus aureus subsp. aureus 68-397]
 gi|257793727|ref|ZP_05642706.1| transposase [Staphylococcus aureus A9781]
 gi|258411264|ref|ZP_05681541.1| transposase [Staphylococcus aureus A9763]
 gi|258422476|ref|ZP_05685387.1| transposase for transposon [Staphylococcus aureus A9719]
 gi|258447337|ref|ZP_05695483.1| tnpA protein [Staphylococcus aureus A6300]
 gi|258448322|ref|ZP_05696447.1| tnpA protein [Staphylococcus aureus A6224]
 gi|258451924|ref|ZP_05699941.1| tnpA protein [Staphylococcus aureus A5948]
 gi|258454551|ref|ZP_05702517.1| tnpA protein [Staphylococcus aureus A5937]
 gi|282929818|ref|ZP_06336961.1| transposase A [Staphylococcus aureus A10102]
 gi|293503535|ref|ZP_06667382.1| transposase A [Staphylococcus aureus subsp. aureus 58-424]
 gi|295407732|ref|ZP_06817517.1| transposase A [Staphylococcus aureus A8819]
 gi|295429348|ref|ZP_06821969.1| transposase A transposon Tn554 [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297246795|ref|ZP_06930604.1| transposase A [Staphylococcus aureus A8796]
 gi|304378957|ref|ZP_07361719.1| transposase A [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|60415970|sp|P0A050|TNPA_STAAM RecName: Full=Transposase A from transposon Tn554
 gi|60415971|sp|P0A051|TNPA_STAAN RecName: Full=Transposase A from transposon Tn554
 gi|60415972|sp|P0A052|TNPA_STAAU RecName: Full=Transposase A from transposon Tn554
 gi|581277|emb|CAA26960.1| tnpA protein [Staphylococcus aureus]
 gi|5360831|dbj|BAA82201.1| transposaseA [Staphylococcus aureus]
 gi|13699971|dbj|BAB41270.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|13700702|dbj|BAB41999.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|13701456|dbj|BAB42750.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|13701947|dbj|BAB43239.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp.
           aureus N315]
 gi|13702552|dbj|BAB43693.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp.
           aureus N315]
 gi|14021043|dbj|BAB47667.1| transposase A(Tn554) [Staphylococcus aureus]
 gi|14245823|dbj|BAB56218.1| transposase A [Staphylococcus aureus subsp. aureus Mu50]
 gi|14247431|dbj|BAB57821.1| transposase A [Staphylococcus aureus subsp. aureus Mu50]
 gi|27529892|dbj|BAC53829.1| transposase A(Tn554) [Staphylococcus aureus]
 gi|28465874|dbj|BAC57491.1| transposaseA [Staphylococcus aureus]
 gi|49240431|emb|CAG39082.1| transposase A 1 [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49242032|emb|CAG40731.1| transposase A 2 [Staphylococcus aureus subsp. aureus MRSA252]
 gi|57636496|gb|AAW53284.1| transposase A [Staphylococcus epidermidis RP62A]
 gi|57637779|gb|AAW54567.1| Tn554, transposase A [Staphylococcus epidermidis RP62A]
 gi|57637918|gb|AAW54706.1| Tn554, transposase A [Staphylococcus epidermidis RP62A]
 gi|70568188|dbj|BAE06285.1| transposase A for Tn554 [Staphylococcus aureus]
 gi|147739557|gb|ABQ47855.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|147741209|gb|ABQ49507.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149944973|gb|ABR50909.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|149946659|gb|ABR52595.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156720521|dbj|BAF76938.1| transposase A [Staphylococcus aureus subsp. aureus Mu3]
 gi|156722112|dbj|BAF78529.1| transposase A [Staphylococcus aureus subsp. aureus Mu3]
 gi|195963185|emb|CAQ43010.1| transposase A [Staphylococcus aureus]
 gi|221327665|gb|ACM17509.1| transposase A [Staphylococcus aureus]
 gi|238773853|dbj|BAH66416.1| transposaseA [Staphylococcus aureus]
 gi|257275283|gb|EEV06770.1| transposase A, tpnA [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257277665|gb|EEV08349.1| tnpA protein [Staphylococcus aureus subsp. aureus 68-397]
 gi|257787699|gb|EEV26039.1| transposase [Staphylococcus aureus A9781]
 gi|257839993|gb|EEV64460.1| transposase [Staphylococcus aureus A9763]
 gi|257841542|gb|EEV65980.1| transposase for transposon [Staphylococcus aureus A9719]
 gi|257853863|gb|EEV76820.1| tnpA protein [Staphylococcus aureus A6300]
 gi|257858417|gb|EEV81295.1| tnpA protein [Staphylococcus aureus A6224]
 gi|257860407|gb|EEV83238.1| tnpA protein [Staphylococcus aureus A5948]
 gi|257863278|gb|EEV86040.1| tnpA protein [Staphylococcus aureus A5937]
 gi|269939560|emb|CBI47921.1| transposase A 1 [Staphylococcus aureus subsp. aureus TW20]
 gi|269941142|emb|CBI49529.1| transposase C 2 [Staphylococcus aureus subsp. aureus TW20]
 gi|282167045|gb|ADA81061.1| Transposase A from transposon Tn554 [Staphylococcus aureus]
 gi|282589025|gb|EFB94130.1| transposase A [Staphylococcus aureus A10102]
 gi|285815781|gb|ADC36268.1| Transposase A from transposon Tn554 [Staphylococcus aureus
           04-02981]
 gi|285817342|gb|ADC37829.1| Transposase A from transposon Tn554 [Staphylococcus aureus
           04-02981]
 gi|288551790|gb|ADC53386.1| transposase A [Staphylococcus aureus]
 gi|291095201|gb|EFE25466.1| transposase A [Staphylococcus aureus subsp. aureus 58-424]
 gi|294967408|gb|EFG43452.1| transposase A [Staphylococcus aureus A8819]
 gi|295126726|gb|EFG56371.1| transposase A transposon Tn554 [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297176346|gb|EFH35621.1| transposase A [Staphylococcus aureus A8796]
 gi|299758064|dbj|BAJ10039.1| transposase A [Staphylococcus aureus]
 gi|302750706|gb|ADL64883.1| phage integrase [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|302751486|gb|ADL65663.1| phage integrase [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304342463|gb|EFM08340.1| transposase A [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|312828683|emb|CBX33525.1| phage integrase, N-terminal SAM-like domain protein [Staphylococcus
           aureus subsp. aureus ECT-R 2]
 gi|315128350|gb|EFT84362.1| transposase A [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195563|gb|EFU25950.1| transposase A [Staphylococcus aureus subsp. aureus CGS00]
 gi|329314333|gb|AEB88746.1| Transposase A from transposon Tn554 [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329727407|gb|EGG63863.1| phage integrase, N-terminal SAM domain protein [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 361

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 66/362 (18%), Positives = 132/362 (36%), Gaps = 71/362 (19%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           ++L++    +++ L+   G S  T+++Y    +    F+            +  +++  +
Sbjct: 23  YQLIEPVMKFIKYLDNT-GKSPNTIKAYCYHLKLLYEFMEQRG------VILNDINFELL 75

Query: 72  RAFISKRRTQKIGD-------------RSLKRSLSGIKSFLKYLKKRKITTESNI----- 113
             F+   R     +              ++   L+ + SFL YL +       ++     
Sbjct: 76  ADFVGWLRYPSASNVIDLQSKKAIREETTVNTILNVVMSFLDYLSRLGEFKSIDVFKQAK 135

Query: 114 -----------------LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
                             N+  L+      R L  K+   ++D               R+
Sbjct: 136 GRNFKGFLHHVNKGRYQKNVLKLRVKKKQIRTLRSKEVKQIIDAC----------HTKRD 185

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----------KGDKIRIVPLLPSV 206
             IL L+Y  GLRI E LSL  ++I+   + + +            K  K R + +   +
Sbjct: 186 KLILMLMYEGGLRIGEVLSLRLEDIVTWDNQIHLTPRDVNVNEAYIKLRKERTIHVSKEL 245

Query: 207 RKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
                +Y      +   +  +   L  G  GKPL        +R++ +  G+    T+H 
Sbjct: 246 MSLYTDYLIYEYSEELEHDYVFISLKEGYFGKPLKYQSVLDLVRRIVKRTGIEF--TSHM 303

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
           LRH+ AT L+  G D+  +Q  LGH  + TT   Y +++ ++    M   +++       
Sbjct: 304 LRHTHATQLIREGWDVAFVQKRLGHAHVQTTLNTYVHLSDQD----MKNEFNKYLERKEH 359

Query: 324 KD 325
           K 
Sbjct: 360 KK 361


>gi|198276324|ref|ZP_03208855.1| hypothetical protein BACPLE_02519 [Bacteroides plebeius DSM 17135]
 gi|198270766|gb|EDY95036.1| hypothetical protein BACPLE_02519 [Bacteroides plebeius DSM 17135]
          Length = 376

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 56/312 (17%), Positives = 107/312 (34%), Gaps = 51/312 (16%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECD------TRQFLIFLAFYTEEKITIQTIRQLS 67
           LL   Q +L+  E             + D       +     L  Y  E+     + ++ 
Sbjct: 93  LLDWMQTYLEYQE-------------KRDKKGIGQIKAVTHILKEYAGERF---ILDRVD 136

Query: 68  YTEIRAFISKR------RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN--- 118
               + +I         + + I   +           L    + K    +    M     
Sbjct: 137 LAFCQGYIDYMLTTFRPKGKPIAASTRNTYYQIFNGALNAAVRAKRLLRNPFNEMEKSEK 196

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            K   S+   +  ++   L+   +     +  ++ +           CGLRIS+ + L  
Sbjct: 197 PKMPESVRSYMTIEEVRALIATPMQEGRVKNAYLFSC---------FCGLRISDIVGLKW 247

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           +N+  D    R+     K +    LP   +A+       P   +     P+F        
Sbjct: 248 KNVFVDNGQYRLAVAMQKTKEPIYLPLSNEALKWM----PEREDKAADDPVFNL------ 297

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            P    +Y+R      G+    T HT RH+FAT +L+ G DL ++  +LGH  +  TQ+Y
Sbjct: 298 -PSNINQYLRPWAEAAGITKRFTFHTARHTFATMMLTLGADLYTVSKLLGHTSVRMTQVY 356

Query: 299 TNVNSKNGGDWM 310
             + ++   + +
Sbjct: 357 AKIINQKKDEAV 368


>gi|325857603|ref|ZP_08172539.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483109|gb|EGC86091.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 435

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 59/294 (20%), Positives = 107/294 (36%), Gaps = 23/294 (7%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           R    F+     + I I  I +  + E R ++ KR    +   ++   L  +   +    
Sbjct: 136 RNLHEFVKDKGVQDILIGAITEDLFEEYRFYLKKR---GLKGTTINNYLCWLSRLMYRAV 192

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
            R I   +   N +  K+  ++ R L +     L+   +  +  E          +    
Sbjct: 193 SRNIIRCNPFENAKYEKEDKNI-RYLQKYDMARLMAMRMNDSEAEQA------RLMFIFS 245

Query: 164 YGCGLRISEALSLTPQNIM---DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
              GL I++  +L  ++I    D Q  +R  + K     +VPL P     I         
Sbjct: 246 CFTGLAIADMETLQYKHIQTAADGQKYIRKERQKTKVEFVVPLHPIAETIISHCRKANHN 305

Query: 220 DLNLNIQLPLFRGI-----RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           DL         +            +  V    +  + +  G+    + H  RH+F T  L
Sbjct: 306 DLTTGQDEQTMKEKGDGFVFHPDSSRSVMNSKLYIVGKACGISQRLSFHMARHTFGTMSL 365

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           S G  + SI  ++GH  +S+TQIY  V      + M  +  +    ++ K+KKN
Sbjct: 366 SAGIPIESIAKMMGHASISSTQIYAQVTDCKISEDMDRLIAK----LSSKEKKN 415


>gi|195867577|ref|ZP_03079580.1| site-specific recombinase, phage integrase family [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
 gi|195660821|gb|EDX54075.1| site-specific recombinase, phage integrase family [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
          Length = 405

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 109/295 (36%), Gaps = 35/295 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +    ++K+ +++I  +  ++ + +  +        +++      +++      +     
Sbjct: 110 MDILKKDKLGVRSIDSIKPSDAKEWAIRMSENGYAYQTINNYKRSLRASFYIAIEDDCVR 169

Query: 110 ESNI-LNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     ++ +   +++P+  L E+Q   L+         +     ++N   + +L   G
Sbjct: 170 KNPFDFQLKAVLDDDTVPKTVLTEEQEEKLL------AFAKADKTYSKNYDEILILLKTG 223

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAIL 211
           LRISE   LT  ++  +   + I                       R VP++    +A  
Sbjct: 224 LRISEFGGLTLPDLDFENRLVNIDHQLLRDTEIGYYIETPKTKSGERQVPMVEEAYQAFK 283

Query: 212 EYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTA 262
                   D  + I      LF   +  P     +   ++ L +         LP   T 
Sbjct: 284 RVLANRKNDKRVEIDGYSDFLFLNRKNYPKVASDYNGMMKGLVKKYNKYNEDKLP-HITP 342

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQ 316
           H+LRH+F T+  + G + +++Q I+GH  ++ T   Y +    +    M  +  +
Sbjct: 343 HSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMKRLNKE 397


>gi|299536245|ref|ZP_07049558.1| prophage Lp3 protein 1, integrase [Lysinibacillus fusiformis ZC1]
 gi|298728231|gb|EFI68793.1| prophage Lp3 protein 1, integrase [Lysinibacillus fusiformis ZC1]
          Length = 388

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 55/291 (18%), Positives = 104/291 (35%), Gaps = 34/291 (11%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
              L  +  Y  EKITI     +       + SK +      R++K   S  K  L +  
Sbjct: 103 NHILPSMGSYRIEKITI----AICQKHYNEWASKVK----KARTIK---SYAKKVLDFAI 151

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
                  +   ++    K        +E +     + ++         ++ +   +  L+
Sbjct: 152 VHGFIQTNPFTHVETKVKKAFTESTEDENENFYTKEELISFLEKAKDHLNYKAYTLFRLI 211

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQG---------------KGDKIRIVPLLPSVRK 208
              G+R SEAL+LT  ++   ++ + I                 K  K R + L  +   
Sbjct: 212 AYTGMRKSEALALTWNDVNFVENEITINKAIGRGKQTQLYLKTTKTGKPRTIKLDETTLS 271

Query: 209 AILEYYDLCPFDL------NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            + E+  L            L     +F   +   + PG  Q+++  ++    L    + 
Sbjct: 272 ILKEWNKLQKQQYIQLGINTLKKNQLMFSNTKNDFIQPGQVQKWMYSVQNKYTL-KKVSP 330

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMME 312
           H LRH+  + L   G  ++ +Q  LGH  + TT  IYT+V  K     + +
Sbjct: 331 HGLRHTHCSLLFEAGASIKEVQDRLGHSDVKTTLDIYTHVTKKAKEGAIQK 381


>gi|22537078|ref|NP_687929.1| Tn916, transposase [Streptococcus agalactiae 2603V/R]
 gi|77411122|ref|ZP_00787475.1| transposase [Streptococcus agalactiae CJB111]
 gi|77414298|ref|ZP_00790456.1| transposase [Streptococcus agalactiae 515]
 gi|146318571|ref|YP_001198283.1| Tn916, transposase [Streptococcus suis 05ZYH33]
 gi|146320770|ref|YP_001200481.1| Tn916, transposase [Streptococcus suis 98HAH33]
 gi|169832853|ref|YP_001694711.1| transposase [Streptococcus pneumoniae Hungary19A-6]
 gi|182683149|ref|YP_001834896.1| hypothetical protein SPCG_0179 [Streptococcus pneumoniae CGSP14]
 gi|225856784|ref|YP_002738295.1| transposase [Streptococcus pneumoniae P1031]
 gi|225861770|ref|YP_002743279.1| transposase [Streptococcus pneumoniae Taiwan19F-14]
 gi|227554339|ref|ZP_03984386.1| phage integrase family site-specific recombinase [Enterococcus
           faecalis HH22]
 gi|229546609|ref|ZP_04435334.1| phage integrase family site-specific recombinase [Enterococcus
           faecalis TX1322]
 gi|253751695|ref|YP_003024836.1| integrase [Streptococcus suis SC84]
 gi|253755101|ref|YP_003028241.1| integrase [Streptococcus suis BM407]
 gi|253755593|ref|YP_003028733.1| integrase [Streptococcus suis BM407]
 gi|255974502|ref|ZP_05425088.1| transposase [Enterococcus faecalis T2]
 gi|256852546|ref|ZP_05557921.1| transposase transposon [Enterococcus faecalis T8]
 gi|257077710|ref|ZP_05572071.1| hypothetical protein EFIG_01493 [Enterococcus faecalis JH1]
 gi|257086326|ref|ZP_05580687.1| transposase [Enterococcus faecalis D6]
 gi|257090932|ref|ZP_05585293.1| transposase [Enterococcus faecalis CH188]
 gi|257868798|ref|ZP_05648451.1| transposase [Enterococcus gallinarum EG2]
 gi|260562522|ref|ZP_05833031.1| transposase [Enterococcus faecium C68]
 gi|270293255|ref|ZP_06199466.1| transposase [Streptococcus sp. M143]
 gi|288905869|ref|YP_003431091.1| integrase [Streptococcus gallolyticus UCN34]
 gi|289422721|ref|ZP_06424561.1| site-specific recombinase, phage integrase family
           [Peptostreptococcus anaerobius 653-L]
 gi|296451810|ref|ZP_06893532.1| transposase [Clostridium difficile NAP08]
 gi|296881112|ref|ZP_06905049.1| transposase [Clostridium difficile NAP07]
 gi|298229317|ref|ZP_06962998.1| putative integrase [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255933|ref|ZP_06979519.1| putative integrase [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503724|ref|YP_003725664.1| phage integrase family site-specific recombinase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|300814579|ref|ZP_07094830.1| site-specific recombinase, phage integrase family [Peptoniphilus
           sp. oral taxon 836 str. F0141]
 gi|300862142|ref|ZP_07108222.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|302379670|ref|ZP_07268155.1| site-specific recombinase, phage integrase family [Finegoldia magna
           ACS-171-V-Col3]
 gi|306832037|ref|ZP_07465192.1| transposase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|306834414|ref|ZP_07467528.1| transposase [Streptococcus bovis ATCC 700338]
 gi|307269843|ref|ZP_07551173.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|307275108|ref|ZP_07556262.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|307284038|ref|ZP_07564208.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|307287203|ref|ZP_07567274.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0109]
 gi|309804793|ref|ZP_07698857.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 09V1-c]
 gi|309806281|ref|ZP_07700294.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 03V1-b]
 gi|309808544|ref|ZP_07702442.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
 gi|312873244|ref|ZP_07733300.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2052A-d]
 gi|312952178|ref|ZP_07771056.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0102]
 gi|313884639|ref|ZP_07818397.1| site-specific recombinase, phage integrase family [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|313890688|ref|ZP_07824314.1| site-specific recombinase, phage integrase family [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313891983|ref|ZP_07825584.1| site-specific recombinase, phage integrase family [Dialister
           microaerophilus UPII 345-E]
 gi|314948678|ref|ZP_07852052.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
 gi|317495467|ref|ZP_07953835.1| phage integrase [Gemella moribillum M424]
 gi|322385321|ref|ZP_08058966.1| transposase [Streptococcus cristatus ATCC 51100]
 gi|322388202|ref|ZP_08061806.1| transposase [Streptococcus infantis ATCC 700779]
 gi|322392777|ref|ZP_08066235.1| transposase [Streptococcus peroris ATCC 700780]
 gi|325911715|ref|ZP_08174122.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners UPII 143-D]
 gi|329122049|ref|ZP_08250657.1| transposase [Dialister micraerophilus DSM 19965]
 gi|331267245|ref|YP_004326875.1| Tn916, transposase; site-specific recombinase,phage integrase
           family [Streptococcus oralis Uo5]
 gi|51703322|sp|P62904|TNR5_STRA5 RecName: Full=Transposase from transposon Tn1545; AltName:
           Full=Integrase
 gi|51703323|sp|P62905|TNR5_STRPN RecName: Full=Transposase from transposon Tn1545; AltName:
           Full=Integrase
 gi|22533937|gb|AAM99801.1|AE014233_18 Tn916, transposase [Streptococcus agalactiae 2603V/R]
 gi|47463|emb|CAA43360.1| integrase of Tn1545 [Streptococcus pneumoniae]
 gi|67043707|gb|AAY63950.1| Int-Tn [Streptococcus cristatus]
 gi|77159643|gb|EAO70796.1| transposase [Streptococcus agalactiae 515]
 gi|77162845|gb|EAO73803.1| transposase [Streptococcus agalactiae CJB111]
 gi|145689377|gb|ABP89883.1| Tn916, transposase [Streptococcus suis 05ZYH33]
 gi|145691576|gb|ABP92081.1| Tn916, transposase [Streptococcus suis 98HAH33]
 gi|154799905|emb|CAO82956.1| integrase of transposon Tn916 [Streptococcus pneumoniae]
 gi|168995355|gb|ACA35967.1| transposase from transposon (Integrase) [Streptococcus pneumoniae
           Hungary19A-6]
 gi|169636240|dbj|BAG12510.1| Int-Tn protein [Streptococcus pneumoniae]
 gi|171472330|gb|ACB46878.1| integrase [Klebsiella pneumoniae]
 gi|182628483|gb|ACB89431.1| hypothetical protein SPCG_0179 [Streptococcus pneumoniae CGSP14]
 gi|183217307|gb|ACC59226.1| integrase [Streptococcus pneumoniae]
 gi|218473439|emb|CAV31149.1| integrase [Streptococcus pneumoniae]
 gi|225725688|gb|ACO21540.1| transposase from transposon (Integrase) [Streptococcus pneumoniae
           P1031]
 gi|225726388|gb|ACO22239.1| transposase from transposon (Integrase) [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|227176549|gb|EEI57521.1| phage integrase family site-specific recombinase [Enterococcus
           faecalis HH22]
 gi|229308266|gb|EEN74253.1| phage integrase family site-specific recombinase [Enterococcus
           faecalis TX1322]
 gi|251815984|emb|CAZ51601.1| integrase [Streptococcus suis SC84]
 gi|251817565|emb|CAZ55312.1| integrase [Streptococcus suis BM407]
 gi|251818057|emb|CAZ55849.1| integrase [Streptococcus suis BM407]
 gi|255967374|gb|EET97996.1| transposase [Enterococcus faecalis T2]
 gi|256712093|gb|EEU27126.1| transposase transposon [Enterococcus faecalis T8]
 gi|256985740|gb|EEU73042.1| hypothetical protein EFIG_01493 [Enterococcus faecalis JH1]
 gi|256994356|gb|EEU81658.1| transposase [Enterococcus faecalis D6]
 gi|256999744|gb|EEU86264.1| transposase [Enterococcus faecalis CH188]
 gi|257802962|gb|EEV31784.1| transposase [Enterococcus gallinarum EG2]
 gi|258590751|emb|CBE66546.1| transposase [Staphylococcus rostri]
 gi|259906610|gb|ACW84384.1| integrase [Streptococcus pneumoniae]
 gi|260073122|gb|EEW61468.1| transposase [Enterococcus faecium C68]
 gi|270279234|gb|EFA25080.1| transposase [Streptococcus sp. M143]
 gi|283470169|emb|CAQ49380.1| transposase from transposon (Integrase) [Staphylococcus aureus
           subsp. aureus ST398]
 gi|288732595|emb|CBI14167.1| putative integrase [Streptococcus gallolyticus UCN34]
 gi|289156900|gb|EFD05525.1| site-specific recombinase, phage integrase family
           [Peptostreptococcus anaerobius 653-L]
 gi|295980958|emb|CBJ57206.1| integrase [Streptococcus pneumoniae]
 gi|296259368|gb|EFH06241.1| transposase [Clostridium difficile NAP08]
 gi|296427881|gb|EFH13791.1| transposase [Clostridium difficile NAP07]
 gi|296777681|gb|ADH43098.1| Tn916-like integrase protein [uncultured bacterium MID12]
 gi|298239319|gb|ADI70450.1| phage integrase family site-specific recombinase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|300511198|gb|EFK38447.1| site-specific recombinase, phage integrase family [Peptoniphilus
           sp. oral taxon 836 str. F0141]
 gi|300848667|gb|EFK76424.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|302312577|gb|EFK94573.1| site-specific recombinase, phage integrase family [Finegoldia magna
           ACS-171-V-Col3]
 gi|304423400|gb|EFM26552.1| transposase [Streptococcus bovis ATCC 700338]
 gi|304425963|gb|EFM29080.1| transposase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|306501801|gb|EFM71092.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0109]
 gi|306503409|gb|EFM72658.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|306508226|gb|EFM77342.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|306513953|gb|EFM82555.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|308165903|gb|EFO68122.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 09V1-c]
 gi|308167265|gb|EFO69431.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 03V1-b]
 gi|308168221|gb|EFO70341.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
 gi|310629834|gb|EFQ13117.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0102]
 gi|311091255|gb|EFQ49643.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2052A-d]
 gi|312620149|gb|EFR31580.1| site-specific recombinase, phage integrase family [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|313119626|gb|EFR42817.1| site-specific recombinase, phage integrase family [Dialister
           microaerophilus UPII 345-E]
 gi|313120936|gb|EFR44049.1| site-specific recombinase, phage integrase family [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313644931|gb|EFS09511.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
 gi|315027177|gb|EFT39109.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2137]
 gi|315032855|gb|EFT44787.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0017]
 gi|315036027|gb|EFT47959.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0027]
 gi|315154501|gb|EFT98517.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0031]
 gi|315154976|gb|EFT98992.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0043]
 gi|315158726|gb|EFU02743.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0312]
 gi|315163447|gb|EFU07464.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0645]
 gi|315164555|gb|EFU08572.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1302]
 gi|315174526|gb|EFU18543.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1346]
 gi|315574457|gb|EFU86648.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309B]
 gi|315582886|gb|EFU95077.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309A]
 gi|316914281|gb|EFV35759.1| phage integrase [Gemella moribillum M424]
 gi|321140874|gb|EFX36375.1| transposase [Streptococcus infantis ATCC 700779]
 gi|321144355|gb|EFX39758.1| transposase [Streptococcus peroris ATCC 700780]
 gi|321156814|emb|CBW38800.1| putative integrase [Streptococcus pneumoniae]
 gi|321156872|emb|CBW38860.1| putative integrase [Streptococcus pneumoniae]
 gi|321157358|emb|CBW39339.1| Integrase [Streptococcus pneumoniae]
 gi|321157378|emb|CBW39358.1| putative integrase (pseudogene) [Streptococcus pneumoniae]
 gi|321157403|emb|CBW39382.1| putative integrase (pseudogene) [Streptococcus pneumoniae]
 gi|321157425|emb|CBW39404.1| putative integrase [Streptococcus pneumoniae]
 gi|321157469|emb|CBW39447.1| putative integrase (pseudogene) [Streptococcus pneumoniae]
 gi|321270580|gb|EFX53495.1| transposase [Streptococcus cristatus ATCC 51100]
 gi|325476481|gb|EGC79640.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners UPII 143-D]
 gi|325689196|gb|EGD31203.1| transposase [Streptococcus sanguinis SK115]
 gi|326683917|emb|CBZ01535.1| Tn916, transposase; site-specific recombinase,phage integrase
           family [Streptococcus oralis Uo5]
 gi|327466856|gb|EGF12372.1| transposase [Dialister micraerophilus DSM 19965]
 gi|327474195|gb|EGF19603.1| transposase [Streptococcus sanguinis SK408]
 gi|332075490|gb|EGI85959.1| transposase [Streptococcus pneumoniae GA41301]
          Length = 405

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 109/295 (36%), Gaps = 35/295 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +    ++K+ +++I  +  ++ + +  +        +++      +K+      +     
Sbjct: 110 MDILKKDKLGVRSIDSIKPSDAKEWAIRMSENGYAYQTINNYKRSLKASFYIAIQDDCVR 169

Query: 110 ESNI-LNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     ++ +   +++P+  L E+Q   L+         +     ++N   + +L   G
Sbjct: 170 KNPFDFQLKAVLDDDTVPKTVLTEEQEEKLL------AFAKADKTYSKNYDEILILLKTG 223

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAIL 211
           LRISE   LT  ++  +   + I                       R VP++    +A  
Sbjct: 224 LRISEFGGLTLPDLDFENRLVNIDHQLLRDTEIGYYIETPKTKSGERQVPMVEEAYQAFK 283

Query: 212 EYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTA 262
                   D  + I      LF   +  P     +   ++ L +         LP   T 
Sbjct: 284 RVLANRKNDKRVEIDGYSDFLFLNRKNYPKVASDYNGMMKGLVKKYNKYNEDKLP-HITP 342

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQ 316
           H+LRH+F T+  + G + +++Q I+GH  ++ T   Y +    +    M  +  +
Sbjct: 343 HSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMKRLNKE 397


>gi|144898165|emb|CAM75029.1| Phage integrase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 387

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 103/263 (39%), Gaps = 28/263 (10%)

Query: 59  TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS-GIKSF---LKYLKKRKITTESNIL 114
             + + ++  T+I     + R + +   ++ R ++   + F   L++         +   
Sbjct: 137 GAKRLDEIRTTDIVELQRRLRDENLSPSTVNRHVALAKRVFNLALRWQAYEGR---NPCQ 193

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           ++   ++     R L   +   L   +    S             + LL   G R SEAL
Sbjct: 194 HVEFAREHQRE-RFLTPDEMRRLFQALDDEPSRSAANC-------IALLALTGARKSEAL 245

Query: 175 SLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           +    +I        +   + K  K+R +PL  +  K ++                 LF 
Sbjct: 246 NARFDDIDLPNRVWTVPASRSKSGKVRRIPLSEAAVKLLVGLPPEPDCP-------WLFP 298

Query: 232 GI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
                 P+     +R   +L+    LP  T  H LRHSFA+ L+ +G  L S+Q+ILGH 
Sbjct: 299 NAASDGPI--ENIRRCWNRLKAAATLPSDTRPHDLRHSFASLLVGSGQSLYSVQTILGHA 356

Query: 291 RLSTTQIYTNVNSKNGGDWMMEI 313
             + T  Y+++++ +  D ++ I
Sbjct: 357 SPNMTARYSHLSNTSLVDRVLGI 379


>gi|148655018|ref|YP_001275223.1| phage integrase family protein [Roseiflexus sp. RS-1]
 gi|148567128|gb|ABQ89273.1| phage integrase family protein [Roseiflexus sp. RS-1]
          Length = 337

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 73/344 (21%), Positives = 122/344 (35%), Gaps = 45/344 (13%)

Query: 9   IVSFELLKERQNWLQNLEIERG-LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           +    L    + W       R  L+  T+++Y      F  +            T+  + 
Sbjct: 1   MTDLALTGVAEAWAAAQRSRRKPLAPSTIETYCDAWCSFARWAQREGRR-----TVADIR 55

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
            T++ A+I       + D ++     G  +  K+L  R        L +  L   ++LPR
Sbjct: 56  ATDLGAWIESLTD--LADGTVLTYGHGALAICKFLADRGCLRCD--LALVRLHLRDALPR 111

Query: 128 AL-----NEKQALTLVDNVLLHTS--------HETKWIDARNSAILYLLYGCGLRISEAL 174
           A      +      LV                   +    RN+A+L+ L+  G RISE L
Sbjct: 112 AYASRAPDVPDLRRLVSFYDGEPPPAEPGRRSERDRLNRLRNAALLHTLFSTGARISEVL 171

Query: 175 SLTPQNIMDDQSTL----RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
           SL  ++++ D   +     + GKG + R V L    ++ I  Y             L + 
Sbjct: 172 SLNVEDVLSDDGCIAPRAFVVGKGQRRRAVFLREHAQQVIARYLTARRATFPHAEALFIS 231

Query: 231 RGIRG--KPLNPGVFQRYIRQLR-------------RYLGLPLSTTAHTLRHSFATHLLS 275
            G RG    L        +                 R      + T HT RH  AT LL+
Sbjct: 232 HGPRGAGGRLGRIAAWSIVTDAASAIASQVEQEGRPREARALRTVTPHTFRHFVATWLLN 291

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
            G  L  + +ILGH     T+ Y    +++  + + E++DQ  P
Sbjct: 292 EGAQLSEVSAILGHANTRITEQY---YARHTDERLQELHDQFAP 332


>gi|227513386|ref|ZP_03943435.1| site-specific tyrosine recombinase XerS [Lactobacillus buchneri
           ATCC 11577]
 gi|227083259|gb|EEI18571.1| site-specific tyrosine recombinase XerS [Lactobacillus buchneri
           ATCC 11577]
          Length = 374

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 58/351 (16%), Positives = 130/351 (37%), Gaps = 48/351 (13%)

Query: 14  LLKERQNWLQNLEIERG---LSKLTLQSYECDTRQFLIFLAFYTE------EKITIQTIR 64
           L+ E   ++Q+  +E+    LS  TL  Y  +  +F  ++           + I +  + 
Sbjct: 25  LIAEMPTYVQDYYLEKSTVPLSPATLYQYLNEFHRFFTWIMDTGITNAVKIKDIPLSDLE 84

Query: 65  QLSYTEIRAFISKRRTQK----------IGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
           +    ++  + +    +           +  R++ RSL+ + +  +YL +     +    
Sbjct: 85  KFKKQDMELYKAFLLNRGKETAKKPQGTLSHRTVNRSLNALSALFRYLTEESENDDGEPY 144

Query: 115 NMRNLKKSNSL-PRALNEKQALTLVDNVLLHTSHETKWIDA------------------- 154
             RN+ K  +L P +   +     + + L+    +  +++                    
Sbjct: 145 FYRNVMKKIALVPDSETYQTRARNIKDKLMLGDADVNYLNYILNDYSKQIKGKRLLKMHE 204

Query: 155 ----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
               R+ AI  L+ G G+R+SE  +    ++   ++T+ +Q KG K   VP+   V   I
Sbjct: 205 RDRERDVAINALMLGTGIRVSELTNANLNDLNLKKATVSVQRKGGKRDSVPIANWVIPYI 264

Query: 211 LEYYDLCPFDLNLNIQLP-LFRGI---RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
             Y  +     +     P LF        + ++    +  + +  +     +  T H LR
Sbjct: 265 KPYLQVRNQRYHATAATPSLFLTKGANEPRRISTATVELLVAKYSQAFN-HVRITPHKLR 323

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           H+ A+ L     +   + + LG      T +YT++        + E++   
Sbjct: 324 HTLASKLYLETNNEHLVATQLGQTSTKATGLYTHIVDTKQKKALDELHKDH 374


>gi|320546738|ref|ZP_08041049.1| phage integrase family site-specific recombinase [Streptococcus
           equinus ATCC 9812]
 gi|320448617|gb|EFW89349.1| phage integrase family site-specific recombinase [Streptococcus
           equinus ATCC 9812]
          Length = 356

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 56/326 (17%), Positives = 118/326 (36%), Gaps = 45/326 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  + R+F  ++             + + T+  LS  ++ +F+   R     
Sbjct: 33  YSFTTLYEYLKEYRRFFEWILESGISNAKKIADVELTTLEHLSKKDMESFVLYLRERPSL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                 Q +   ++ R+LS + S  KYL +       +    RN+               
Sbjct: 93  NTYSTKQGVSQTTINRTLSALSSLFKYLTEEVEDENGDPYFYRNVMKKIATKKKKETLAA 152

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA--------RNSAILYLLYGCGLRIS 171
           +  N   +     + +  ++ +     ++              R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKGKLFLGDETIAFIEYIDKEYQNKLSHRALSSFQKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLF 230
           EA++L  +++  +   + +  KG K   V +    +  + EY  +         Q   LF
Sbjct: 213 EAVNLDLKDLNLNMMVIEVTRKGGKRDSVNVAAFAKPYLEEYLKIRAPRYKAEKQDQALF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +  +     +  T H LRH+ AT L         +   L
Sbjct: 273 LTEYRGVPNRIDASSIEKLVAKYSQ--DFKVRVTPHKLRHTLATRLYGATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH     T +YT++ +    + + ++
Sbjct: 331 GHATTQVTDLYTHIVNDEQKNALDKL 356


>gi|312887689|ref|ZP_07747278.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311299784|gb|EFQ76864.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 420

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 76/299 (25%), Positives = 124/299 (41%), Gaps = 31/299 (10%)

Query: 26  EIERG-LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT---- 80
           E E+  L+K T+++Y       L FL     +K     I QLSY  I  F    RT    
Sbjct: 119 EYEKQVLAKGTMKNYYTTQDYILQFLK--KSKKPAGWDITQLSYKFIADFELFLRTFKKK 176

Query: 81  ---QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q + +  + + L   K  +      +   +   +    LK ++     L E++ L +
Sbjct: 177 DDPQPLNNNGVMKHLERFKKMINMAVTIEWLDKDPFVK-HKLKFTSKERGYLTEEE-LAV 234

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGK 193
           V+   L T    K I  R+  +       GL   +A++LT  N    I  +   L  + K
Sbjct: 235 VETKELKT---DKLIYVRD--LFLFGCYTGLSYIDAINLTANNLMIGIDKEHWLLTQRQK 289

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
             K   +PLLP   + I  +        N         G   +P++      Y++ L R 
Sbjct: 290 SSKPVKLPLLPLAAQIIARHRHDPRAISN---------GTIFRPISNQKLNDYLKDLARE 340

Query: 254 LGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            G+  + + H  RH+FAT + L+NG  + ++  +LGH ++STTQIY  V  +   D M 
Sbjct: 341 CGIDKNFSFHLARHTFATTVTLANGVPIETVSKMLGHTKISTTQIYAKVVERKVSDDMK 399


>gi|270339834|ref|ZP_06006153.2| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270333598|gb|EFA44384.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 381

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 57/285 (20%), Positives = 103/285 (36%), Gaps = 25/285 (8%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           K T++++    + F +FL          +   +      R F+   R     + ++   L
Sbjct: 90  KATVRAFRDSRKNFALFLKKRGSGDCLPKEADKDLIEHYRLFM--LRDLGNKESTVSNRL 147

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +   ++   + +   E     +        +     E+ ALT  D   L +    + +
Sbjct: 148 RHLHQVIRKALQERYIREDPFEQID-------IETPTYERNALTSDDLHKLLSYRPHRSV 200

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           D     I  L    GL  S+   L   ++    D +  + +     + R +  L  + + 
Sbjct: 201 DNHCRLIFLLGCFTGLAFSDLKKLRMDDVYTLDDGRRYISLCRTKTQNRSIVPLLPIAEE 260

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS--TTAHTLRH 267
           IL        +  L  + P              F R IR +    GLP     T+HT RH
Sbjct: 261 ILTIVSDGQKEGLLFREFP----------TNSHFNRKIRDIIIKAGLPPHTEATSHTARH 310

Query: 268 SFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +FAT   L NG  + ++  +LGH  +STT++Y  V+       M 
Sbjct: 311 TFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKSKIAREMQ 355


>gi|116329653|ref|YP_799372.1| XerD related protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116122546|gb|ABJ80439.1| XerD related protein (integrase family) [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
          Length = 298

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 57/300 (19%), Positives = 122/300 (40%), Gaps = 37/300 (12%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           +R   K T  +Y      FL F           +   +++  ++  ++   R +K+   +
Sbjct: 23  QRNYKKATAYTYMKYNLDFLHFAD---------KPAEKITVKDLNRYMDHLRKRKVSSST 73

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           ++ ++S +K F        +   +   + +   +  + P A+  K+  +++     +  H
Sbjct: 74  IQINVSSLKMFF-----EDVMKMNLFQDFQRPVREYNNPNAITYKEMQSILKTASSNAKH 128

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG-DKIRIVPLLPSV 206
           E          +  L+Y  GLR+ E ++L   ++   + ++ I+     + R V +   +
Sbjct: 129 E---------LMCGLVYFGGLRVGELITLRWAHLDTKRKSIHIKVPVLSQSRTVEIPAEL 179

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              I +Y      ++  +    LF G   G        +R I ++ R  G+    T  TL
Sbjct: 180 GTLIKKY----EREVISSSSTYLFPGKSLGSHTTSRNVERIISEIGRNSGISSPITVFTL 235

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT--------NVNSKNGGDWMMEIYDQT 317
           RHS A HL+++G  L  ++  LGH  L++T+ Y         +V  K+  + +  I  + 
Sbjct: 236 RHSRALHLIADGSSLNHVKDFLGHKTLASTESYLPVKRNLRSSVREKSRQEALKNIRKKF 295


>gi|281424826|ref|ZP_06255739.1| integrase [Prevotella oris F0302]
 gi|299142377|ref|ZP_07035509.1| integrase [Prevotella oris C735]
 gi|281401196|gb|EFB32027.1| integrase [Prevotella oris F0302]
 gi|298576099|gb|EFI47973.1| integrase [Prevotella oris C735]
          Length = 414

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 106/293 (36%), Gaps = 12/293 (4%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97
           +Y+       +   F  ++ +T   I  ++      +    + + +   ++ R L  +  
Sbjct: 127 TYQNLLYSDKLLTEFVKDKGMTDIVIATITEDLFEEYRFYLKRRGLATVTMNRYLCWLSR 186

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
            +     +++   ++  N +  K    + R L +     L+   ++    E         
Sbjct: 187 LMYRAVSQRLIRYNSFENAKYEKTEQKI-RFLQKSDVAKLMALRVIDKEAEQA------R 239

Query: 158 AILYLLYGCGLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
            +       GL I++   L   ++    D Q  +R + +  K+  +  L  + +AI+   
Sbjct: 240 RLFVFACFTGLAIADMEHLQFGHVQTAADGQKYIRKERQKTKVEFIVPLHPIAEAIINQC 299

Query: 215 DLCPFDLNLNIQLPLFRG--IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                 +     +       +     +  V    +  + +  G+    + H  RH+F T 
Sbjct: 300 KKEQPSMKEMQTVKEKDNDLVFHCTCSRSVMNAKLSIVGKACGIRERLSYHMARHTFGTM 359

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
            LS G  + SI  ++GH  +S+TQIY  V      + M  +  +     T+++
Sbjct: 360 SLSAGIPIESIAKMMGHASISSTQIYAQVTDNKISEDMDRLIRKHQKEETKEE 412


>gi|227885195|ref|ZP_04003000.1| outer membrane usher protein FimD precursor [Escherichia coli
           83972]
 gi|158117666|gb|ABW16854.1| FimB/FimD fusion [Escherichia coli]
 gi|227838024|gb|EEJ48490.1| outer membrane usher protein FimD precursor [Escherichia coli
           83972]
 gi|307556555|gb|ADN49330.1| outer membrane usher protein FimD precursor [Escherichia coli ABU
           83972]
          Length = 840

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/190 (25%), Positives = 69/190 (36%), Gaps = 8/190 (4%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K  N     L   +  +L+       +  T    ARN  +  L +  G R SE   L   
Sbjct: 4   KADNKKRNFLTHSEIESLL------KAANTGPHAARNYCLTLLCFIHGFRASEICRLRIS 57

Query: 180 NIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           +I      + I   K       PLL    +A+  +  +     +   +  +F   +G PL
Sbjct: 58  DIDLKAKCIYIHRLKKGFSTTHPLLNKEIQALKNWLSIRTSYPHAESE-WVFLSRKGNPL 116

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +   F   I       GL L    H LRHS    L + G D R IQ  LGH  +  T  Y
Sbjct: 117 SRQQFYHIISTSGGNAGLSLEIHPHMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWY 176

Query: 299 TNVNSKNGGD 308
           T  N+    D
Sbjct: 177 TASNAGRLRD 186


>gi|94266109|ref|ZP_01289825.1| Phage integrase [delta proteobacterium MLMS-1]
 gi|93453327|gb|EAT03764.1| Phage integrase [delta proteobacterium MLMS-1]
          Length = 379

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 58/271 (21%), Positives = 108/271 (39%), Gaps = 21/271 (7%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           ++ Y+   +    +L  +       Q + Q+   E+       + +     +  R +  +
Sbjct: 114 VKGYKRSWKSDFGYLKNHLLPLFGNQHLDQIKQAEVIELHHGMKARGYALATCNRQVILL 173

Query: 96  KSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
           +      +K KI     +    +   + +N   R L E +A  L   +    + + K+  
Sbjct: 174 RYIFNLARKWKIPGADNNPTTGVVLFETNNGRERYLTEDEAARLKAALESSENTQLKY-- 231

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILE 212
                I+ LL   G R SE L+   ++    + + RI   K  K R VPL  +  + +  
Sbjct: 232 -----IVSLLLLLGCRKSELLNSRWEDFDLARRSWRIPLSKSGKARYVPLSTAALEVLAS 286

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
              L P+ +     L  F              R     R+  GLP     H LRHSFA+ 
Sbjct: 287 IPRLSPYVVPNPKTLQPFVS----------VFRSWDTARKKAGLP-DVRMHDLRHSFASF 335

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           L+++G  +  +  +LGH +L TTQ Y+++++
Sbjct: 336 LVNSGRSIYEVSQLLGHSQLKTTQRYSHLSN 366


>gi|310826020|ref|YP_003958377.1| hypothetical protein ELI_0397 [Eubacterium limosum KIST612]
 gi|308737754|gb|ADO35414.1| hypothetical protein ELI_0397 [Eubacterium limosum KIST612]
          Length = 359

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 62/324 (19%), Positives = 124/324 (38%), Gaps = 43/324 (13%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +    +NWL+  E E  +   TL++Y    R  LI +       +    ++ ++   ++ 
Sbjct: 23  MRDLLENWLKEKEKEGKVKIKTLENYRRQVRVHLIPM-------LGEYEVQDITTEVLQD 75

Query: 74  FISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           F+     +  +   ++K     I + LK   +  I  E+   ++   K +    +ALN  
Sbjct: 76  FVFYLEEENGLNPTTVKNIFGRIATVLKKAHEDGIIFENPCNSVVLPKANARTGKALNRL 135

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L    +L     +K +       +Y+    GLRISE  +L  ++I  +   + ++ 
Sbjct: 136 EQDKL--EKVLSNDEGSKTLS------VYIALHSGLRISEVTALKWKDIDMENEFIYVRH 187

Query: 193 KGDKI------------------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
              +I                        R +P+   +   I EYY              
Sbjct: 188 SFQRISQQMTDGTHKSSLLLGKPKSLKSVRSIPMNDLLAMKIKEYYKGLEKWQRKGEMFV 247

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           + +G      +    QRY   + +   +      H LRH+FAT+  + G D++ I  +LG
Sbjct: 248 ISKGNGSF-YDVRTIQRYFNDVCKVACIDHH-HFHDLRHTFATNAKACGIDIQLISEMLG 305

Query: 289 HFRLSTTQ-IYTNVNSKNGGDWMM 311
           H ++ TT  IY + +  +  + + 
Sbjct: 306 HAQIKTTMDIYVHPSDTDKQNAIQ 329


>gi|218129441|ref|ZP_03458245.1| hypothetical protein BACEGG_01018 [Bacteroides eggerthii DSM 20697]
 gi|254881363|ref|ZP_05254073.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|313145864|ref|ZP_07808057.1| integrase [Bacteroides fragilis 3_1_12]
 gi|317476187|ref|ZP_07935438.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|217988171|gb|EEC54494.1| hypothetical protein BACEGG_01018 [Bacteroides eggerthii DSM 20697]
 gi|254834156|gb|EET14465.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|313134631|gb|EFR51991.1| integrase [Bacteroides fragilis 3_1_12]
 gi|316907598|gb|EFV29301.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 376

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 56/312 (17%), Positives = 107/312 (34%), Gaps = 51/312 (16%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECD------TRQFLIFLAFYTEEKITIQTIRQLS 67
           LL   Q +L+  E             + D       +     L  Y  E+     + ++ 
Sbjct: 93  LLDWMQTYLEYQE-------------KRDKKGIGQIKAVTHILKEYAGERF---ILDRVD 136

Query: 68  YTEIRAFISKR------RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN--- 118
               + +I         + + I   +           L    + K    +    M     
Sbjct: 137 LAFCQGYIDYMLTTFRPKGKPIAASTRNTYYQIFNGALNAAVRAKRLLRNPFNEMEKSEK 196

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            K   S+   +  ++   L+   +     +  ++ +           CGLRIS+ + L  
Sbjct: 197 PKMPESVRSYMTIEEVRALIATPMQEGRVKNAYLFSC---------FCGLRISDIVGLKW 247

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           +N+  D    R+     K +    LP   +A+       P   +     P+F        
Sbjct: 248 KNVFVDNGQYRLAVAMQKTKEPIYLPLSNEALKWM----PEREDKAADDPVFNL------ 297

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            P    +Y+R      G+    T HT RH+FAT +L+ G DL ++  +LGH  +  TQ+Y
Sbjct: 298 -PSNINQYLRPWAEAAGITKRFTFHTARHTFATMMLTLGADLYTVSKLLGHTSVRMTQVY 356

Query: 299 TNVNSKNGGDWM 310
             + ++   + +
Sbjct: 357 AKIINQKKDEAV 368


>gi|283797481|ref|ZP_06346634.1| putative integrase [Clostridium sp. M62/1]
 gi|291074849|gb|EFE12213.1| putative integrase [Clostridium sp. M62/1]
 gi|295090011|emb|CBK76118.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 334

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 55/300 (18%), Positives = 117/300 (39%), Gaps = 42/300 (14%)

Query: 46  FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR 105
           ++  +  + + ++   +  +L+   I  F+ K++ Q +   +++  L  +K  ++  K+R
Sbjct: 45  YVTLIEKHIQAELGNMSAGKLTNRVILEFVRKKQRQGLSAGTVRLLLFLLKRIVQAGKER 104

Query: 106 KITTESNILNMRNLKKSNSLP--RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
            I        + + ++   L   + + E +    + + LLH+              L + 
Sbjct: 105 GIW---PAEEL-SFRQPRQLSGGKNIMEWEDFHKILSYLLHSRRSFDLG-------LLIS 153

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR-------KAILEYYDL 216
              G+R+ E   +   +I      LR++    +IR V +    +       + I++    
Sbjct: 154 LSTGIRVGELCGIKWGDIDLKAGILRVRRTVSRIRNVDIEEQQKPFPAKQSRTIIQIGPP 213

Query: 217 CPFDLNLNIQLPLFR--------------------GIRGKPLNPGVFQRYIRQLRRYLGL 256
                  +I LP F                       R + + P   QR  + L +  G+
Sbjct: 214 KTETSVRDIPLPQFLVERLRERQEERRFSSQAYVLTGRAQFMEPRGVQRRFKNLLKKCGI 273

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYD 315
                 H+LRHSFA+  + NG D +++  ILGH  +  T  IY + + +    +M  + D
Sbjct: 274 E-PVNIHSLRHSFASKWIENGFDSKALSEILGHSSVKITMDIYVHSSMRQKKSYMDRVLD 332


>gi|224542983|ref|ZP_03683522.1| hypothetical protein CATMIT_02177 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524121|gb|EEF93226.1| hypothetical protein CATMIT_02177 [Catenibacterium mitsuokai DSM
           15897]
          Length = 281

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/300 (17%), Positives = 110/300 (36%), Gaps = 33/300 (11%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  ++ E   +  T++ Y      FL  +    +E         +   ++ A+ SK  
Sbjct: 7   EFLNEMKYEE-KAPNTVKQYRRACTNFLSSIEDKNKE---------VKKDDVMAYKSKML 56

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKKSN--SLPRALNEKQALT 136
            +     ++  S+  I  FL+Y +   +         ++ +++    SL   L   +   
Sbjct: 57  DE-YKPSTINVSIICINKFLRYCETESLERGQRSRMEVKTIREQRVSSLEDVLEPGELKR 115

Query: 137 LVDNVLLHTSHETKWIDARN-SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           L+          ++ +   +   I+ +    G+R  E    T +N+   + T+       
Sbjct: 116 LLKY--------SRRLGYDDIYLIIKIFAYTGIRCQELKDFTAENM---KHTIIRTNSKG 164

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYL 254
           K+R + L   ++K I +Y               +FR      L P     R ++++    
Sbjct: 165 KVREIILRDDLKKEINQYMKRHGI-----TGGYVFRNDDNDGLIPYQTIYRKLQKVAGAA 219

Query: 255 GLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            +       H+ RH F    +  GG++  +  I GH  L TT+IY    +K   + M  +
Sbjct: 220 KVNKRKVHPHSFRHLFGIVFMQQGGNIDELADIYGHSSLETTRIYLRTTAKMKKEKMSRL 279


>gi|330902727|gb|EGH33740.1| hypothetical protein PSYJA_34455 [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 206

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/198 (27%), Positives = 89/198 (44%), Gaps = 17/198 (8%)

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNV---LLHTSHETKWIDARNSAILYLLYGCG 167
           + +  ++  +  +      NE +   L D+    LL    ET     R+ A+L +L   G
Sbjct: 6   NPVHGVKRPRIES------NEGKTPALGDHQAKALLEAPDETTLKGQRDRALLAVLLYHG 59

Query: 168 LRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           LR  EA  L   +I + +    L++ GKG K+R +PL P     I +Y +     L    
Sbjct: 60  LRREEAALLQVSDIQERRGIQHLKVHGKGGKVRYLPLHPIAAGRIHQYLENSEHHLAER- 118

Query: 226 QLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDL 280
           ++PLF  +RGK     +        +    +  G+       H LR + AT+ L +  D+
Sbjct: 119 KVPLFMPLRGKLTGAGITANGIYAVVTAYAKKAGIEVDGLGVHGLRATAATNALEHEADI 178

Query: 281 RSIQSILGHFRLSTTQIY 298
             +Q+ LGH  +STT+IY
Sbjct: 179 AKVQAWLGHANISTTKIY 196


>gi|321157444|emb|CBW39423.1| putative integrase (pseudogene) [Streptococcus pneumoniae]
          Length = 399

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/291 (15%), Positives = 110/291 (37%), Gaps = 33/291 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +    ++K+ +++I  +  ++ + +  +        +++      +K+      +     
Sbjct: 110 MDILKKDKLGVRSIDSIKPSDAKEWAIRMSENGYAYQTINNYKRSLKASFYIAIQDDCVR 169

Query: 110 ESNI-LNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     ++ +   +++P+  L E+Q   L+         +     ++N   + +L   G
Sbjct: 170 KNPFDFQLKAVLDDDTVPKTVLTEEQEEKLL------AFAKADKTYSKNYDEILILLKTG 223

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAIL 211
           LRISE   LT  ++  +   + I                       R VP++    +A  
Sbjct: 224 LRISEFGGLTLPDLDFENRLVNIDHQLLRDTEIGYYIETPKTKSGERQVPMVEEAYQAFK 283

Query: 212 EYYDLCPFDLNLNIQ---LPLFRGIRGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
                   D  + I      LF   +  P  +  G+ ++Y +     L      T H+LR
Sbjct: 284 RVLANRKNDKRVEIDGYSDFLFLNRKNYPKVMMKGLVKKYNKYNEDKL---PHITPHSLR 340

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQ 316
           H+F T+  + G + +++Q I+GH  ++ T   Y +    +    M  +  +
Sbjct: 341 HTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMKRLNKE 391


>gi|325851900|ref|ZP_08171033.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325484677|gb|EGC87591.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 417

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 58/285 (20%), Positives = 105/285 (36%), Gaps = 25/285 (8%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           K T++++    + F+ FL     E    +   +      R F+   R     + ++   L
Sbjct: 130 KATVRAFRDSRKSFVQFLKTRGNEDYLPKEADKDLIESYRLFM--LRDLGNKESTVSNRL 187

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +   ++  ++ +   E     +        +     E+ ALT  D   L +    + +
Sbjct: 188 RHLHQVIRKAQQERYIREDPFELID-------IETPTYERNALTSDDLHKLLSYRPHRSV 240

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           D     I  L    GL  S+   L   ++    D +  + +     + R +  L  + + 
Sbjct: 241 DNHCRLIFLLGCFTGLAFSDLKKLRLDDVYTLDDGRRYISLCRTKTQNRSIVPLLPIAEE 300

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS--TTAHTLRH 267
           IL        +  L  + P              F R IR +    GLP     T+HT RH
Sbjct: 301 ILTIVSDGRKEGLLFREFP----------TNSHFNRKIRDIIIKAGLPPHTEATSHTARH 350

Query: 268 SFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +FAT   L NG  + ++  +LGH  +STT++Y  V+       M 
Sbjct: 351 TFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKSKIAREMQ 395


>gi|239907103|ref|YP_002953844.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239796969|dbj|BAH75958.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 409

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/334 (15%), Positives = 100/334 (29%), Gaps = 44/334 (13%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E       +  + +L     +R  S      Y    R   +F            ++ +  
Sbjct: 92  EAAPLTFGELARRYLD--WAKRNKSSWKEDEYLLAKRVLPLFA------HRPATSLTRTD 143

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE---------SNILNMRN 118
             + R  +       +   ++K  L  I+    +     +  +         + +  +R 
Sbjct: 144 TEQFRDAL--LDAGGLSPMTIKHHLVVIRRVYNWAASTPVADDPGHMLFEGRNPVSGIRM 201

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
               N   R L  ++A  L++                   I+ L    G+R  E L L  
Sbjct: 202 PLVDNERIRFLTREEADRLLEAAGERLPEMHD--------IILLALLTGMRRQEILGLMW 253

Query: 179 QNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           Q++      + I     +  + R   L       +    +             +F G   
Sbjct: 254 QDVDLVNRIISIPARLTRAKRSRKAFLDEETAAMLQARREHAQ-------SPFVFPGAVD 306

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTT-------AHTLRHSFATHLLSNGGDLRSIQSILG 288
              +P    R    L   +GL    T        HTLRH+FA+ L   G D+  +  + G
Sbjct: 307 GRRDPDHVTRQFDALVNGIGLNNGVTDPKHKVVFHTLRHTFASWLAQAGADIHHLMELTG 366

Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           H  +ST Q Y ++           +  +  P+  
Sbjct: 367 HKSISTMQRYAHLMPGKTRAIASLVSRRASPAPK 400


>gi|293369055|ref|ZP_06615653.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292635861|gb|EFF54355.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 285

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/287 (18%), Positives = 113/287 (39%), Gaps = 34/287 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            L+K T+ SY    + FL       ++ +       L+Y   + ++     +    +++ 
Sbjct: 31  NLAKNTVTSYVWTVQYFLNHYEEINKKNL-------LTY---KGYLV----ENFKPQTVN 76

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             L GI  +L++ K+ K+        ++ +K        L  +  ++  D   L T  +T
Sbjct: 77  LRLQGINKYLEFTKQEKL-------KVKFVKVQQK--NFL--ENVISDADYKFLKTRLKT 125

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              +     I++ +   G R+SE L +  +++      L +  KG KIR + +  ++R  
Sbjct: 126 DGYNEW-YFIVWFMAATGARVSELLHIKAEHVHV--GHLDLYSKGGKIRRLYIPKNLRTE 182

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHS 268
             ++           I   +F    G+ +      + ++      G+       H+ RH 
Sbjct: 183 ATKWLKEKGL-----ISGYIFLNRFGERITTRGIAQQLKHFAEKYGMNKEVVYPHSFRHR 237

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           FA + L    DL  +  ++GH  + TT+IY    +      + ++ +
Sbjct: 238 FAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDKVVN 284


>gi|282860181|ref|ZP_06269256.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282587070|gb|EFB92300.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 406

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 66/319 (20%), Positives = 130/319 (40%), Gaps = 31/319 (9%)

Query: 14  LLKERQNWL----QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLS 67
           LL+    +L    + + I+R L    L +Y+      L  L  Y ++K  +  I   QL 
Sbjct: 110 LLESFGEYLTQTKERIGIDRALKTFKLCTYQ------LSLLREYVQKKHKVCDIPLSQLD 163

Query: 68  YTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
              I  F       +++   S+  +LS +++ ++   K+ +      L   + ++    P
Sbjct: 164 KAFIEGFEYYLTIDRRLKRSSISSALSTLQTIVRMALKKGVLDFYPFLGY-SYERPKGEP 222

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R++ +++   ++D   L    E   I      +       GL IS+  +L  +NI+ ++ 
Sbjct: 223 RSITKEELERIID---LEIEWENYRIV---RDLFVFSCFTGLAISDVRNLREENIVTEEG 276

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            L I+G+  K +    +  +  A+                +P             +    
Sbjct: 277 KLCIKGRRMKTKTPYRVQVLPPALTIMNRYRGIRAGFVFDVP----------TTDIVLNG 326

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +  ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQ+Y  V+S+ 
Sbjct: 327 MHYIQRNIGMETPLTFHMARHTFASIITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSER 386

Query: 306 GGDWMMEIYDQTHPSITQK 324
               M  I  +   + T K
Sbjct: 387 IHRDMQAIQQRIQDTFTLK 405


>gi|532537|gb|AAB60032.1| ORF4 [Enterococcus faecalis]
 gi|209969466|dbj|BAG80637.1| integrase [Streptococcus parauberis]
 gi|1097931|prf||2114402AB ORF 4
          Length = 324

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 109/295 (36%), Gaps = 35/295 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +    ++K+ +++I  +  ++ + +  +        +++      +K+      +     
Sbjct: 29  MDILKKDKLGVRSIDSIKPSDAKEWAIRMSENGYAYQTINNYKRSLKASFYIAIQDDCVR 88

Query: 110 ESNI-LNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     ++ +   +++P+  L E+Q   L+         +     ++N   + +L   G
Sbjct: 89  KNPFDFQLKAVLDDDTVPKTVLTEEQEEKLL------AFAKADKTYSKNYDEILILLKTG 142

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAIL 211
           LRISE   LT  ++  +   + I                       R VP++    +A  
Sbjct: 143 LRISEFGGLTLPDLDFENRLVNIDHQLLRDTEIGYYIETPKTKSGERQVPMVEEAYQAFK 202

Query: 212 EYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTA 262
                   D  + I      LF   +  P     +   ++ L +         LP   T 
Sbjct: 203 RVLANRKNDKRVEIDGYSDFLFLNRKNYPKVASDYNGMMKGLVKKYNKYNEDKLP-HITP 261

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQ 316
           H+LRH+F T+  + G + +++Q I+GH  ++ T   Y +    +    M  +  +
Sbjct: 262 HSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMKRLNKE 316


>gi|54307178|ref|YP_133692.1| integrase [Enterococcus faecalis]
 gi|135952|sp|P22886|TNR6_ENTFA RecName: Full=Transposase from transposon Tn916; AltName:
           Full=Integrase
 gi|154956|gb|AAA19427.1| ORF2 [Enterococcus faecalis]
 gi|532535|gb|AAB60030.1| ORF2 [Enterococcus faecalis]
 gi|1097952|prf||2114402Y int-Tn gene
          Length = 405

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 109/295 (36%), Gaps = 35/295 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +    ++K+ +++I  +  ++ + +  +        +++      +K+      +     
Sbjct: 110 MDILKKDKLGVRSIDSIKPSDAKEWAIRMSENGYAYQTINNYKRSLKASFYIAIQDDCVR 169

Query: 110 ESNI-LNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     ++ +   +++P+  L E+Q   L+         +     ++N   + +L   G
Sbjct: 170 KNPFDFQLKAVLDDDTVPKTVLTEEQEEKLL------AFAKADKTYSKNYDEILILLKTG 223

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAIL 211
           LRISE   LT  ++  +   + I                       R VP++    +A  
Sbjct: 224 LRISEFGGLTLPDLDFENRLVNIDHQLLRDTEIGYYIETPKTKSGERQVPMVEEAYQAFK 283

Query: 212 EYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTA 262
                   D  + I      LF   +  P     +   ++ L +         LP   T 
Sbjct: 284 RVLANRKNDKRVEIDGYSDFLFLNRKNYPKVASDYNGMMKGLVKKYNKYNEDKLP-HITP 342

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQ 316
           H+LRH+F T+  + G + +++Q I+GH  ++ T   Y +    +    M  +  +
Sbjct: 343 HSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMKRLNKE 397


>gi|310829805|ref|YP_003962162.1| hypothetical protein ELI_4257 [Eubacterium limosum KIST612]
 gi|308741539|gb|ADO39199.1| hypothetical protein ELI_4257 [Eubacterium limosum KIST612]
          Length = 304

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 72/322 (22%), Positives = 133/322 (41%), Gaps = 54/322 (16%)

Query: 18  RQNWLQNLEIE-RGLSKLTLQSYEC-DTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            + WL   E + +G S  T +SYE    R FL  L            + +++  + RAF 
Sbjct: 7   LETWLGEQEADVKGSSLKTYKSYERVHIRPFLGHL-----------YLAEITTKKQRAF- 54

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            K+  + + D++++  LS +++ LK  K++        + ++  K +        EK+  
Sbjct: 55  KKQLCESLADKTVRDILSYLRTLLKRAKQKGY-----TVCIKTPKTA----VEWREKEVP 105

Query: 136 TLVDNVLLHTS--HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-- 191
              ++  L     H  K +D      + L    GLR+ E L L  +++    S L ++  
Sbjct: 106 DFQEHKALSEKLRHSQKPVDMG----ILLAMSTGLRLGEVLGLRVKDVDLRASVLHVRAN 161

Query: 192 -------------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
                                    R +PL P+++ A+  Y        N + + PL   
Sbjct: 162 RQRIYDPKTNTYPVREQTPKTQKSCRSIPLHPALKNALAHYLKNMG---NPDKEKPLIAN 218

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
            +G+  +    QR  + +++ LGL    T H+LRHSFAT  L  G  + ++  +LGH  +
Sbjct: 219 RQGRAYDARTLQRRFQAVKKELGLRPGVTFHSLRHSFATRALELGASIHTLSELLGHSSV 278

Query: 293 S-TTQIYTNVNSKNGGDWMMEI 313
           + T   Y +  ++     M +I
Sbjct: 279 AFTLNTYGHSVTEQKRLEMEKI 300


>gi|294783592|ref|ZP_06748916.1| phage integrase family site-specific recombinase [Fusobacterium sp.
           1_1_41FAA]
 gi|294480470|gb|EFG28247.1| phage integrase family site-specific recombinase [Fusobacterium sp.
           1_1_41FAA]
          Length = 371

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 74/328 (22%), Positives = 137/328 (41%), Gaps = 36/328 (10%)

Query: 3   GNNLPEIVSFELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
            NNL    +       + W+  + ++E  +S  T   YE   R  L  L +     I+ +
Sbjct: 62  KNNLLSNSNITFGDLFKQWIFNHKKVE--VSDNTFGEYETAYR--LRILPY----NISNK 113

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            + Q++  +++ + ++ + +K    ++K++   I S  K+   + I  ++  L +   K+
Sbjct: 114 RVNQITLNDLQMYFNELQ-EKFSTNTIKKAYIQIHSCFKFAIIQGILNKNPCLGVTLQKE 172

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
                  +  KQ   L+    L+T ++   +D     ++Y  +  GLR+ E L+L   ++
Sbjct: 173 KKKEKYNVFSKQEQELI----LNTLNKKDIVD----CLIYFTFFTGLRLGEVLALKWTDV 224

Query: 182 MDD--------QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----L 229
                        T+ I+  G             K       L    L +   +P    L
Sbjct: 225 KGKILSVERQYNRTVTIKDIGVSKLTYEFKDLKTKNSKREIPLPDKALVILEGIPKTYEL 284

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
                GKP+     QR I  L + L L    + H++RHS+AT L      ++++QS++GH
Sbjct: 285 IFSDEGKPIERKRPQRRITALCKKLNLE-HRSFHSIRHSYATRLFELDVPIKTVQSLMGH 343

Query: 290 FRLSTTQ-IYTNVNSKNGGDWMMEIYDQ 316
             + TT  IYT+V      D  MEI D+
Sbjct: 344 SDMDTTMNIYTHV----MQDKKMEIIDK 367


>gi|291558084|emb|CBL35201.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a]
          Length = 476

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 55/306 (17%), Positives = 116/306 (37%), Gaps = 45/306 (14%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT---------- 80
             + TL+        +   +  +   +I    + +LS ++++ F +K +T          
Sbjct: 85  YCRHTLR--ITTRTDYENRIYNHIIPEIGKIPLNRLSQSDLQQFYAKEKTDGRKLHAKTY 142

Query: 81  -QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + + DR+++   +  ++ L+   +  +   +  +  +   K     + L + + +  + 
Sbjct: 143 GKGLSDRTIRGIHANCRTALQRAVQEGLIRTNPAVGCKLPPKKAREMQVLTQNEIIRFL- 201

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--------- 190
                  H+ K        +L L  G G+R  E L+L   ++      LRI         
Sbjct: 202 -------HQAKEEGYYELFLLEL--GTGMRRGEILALKWSDLNFATGELRIGRQVYIIKA 252

Query: 191 ------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                       IR V L PS+ K +  Y +    +              G+P NP   +
Sbjct: 253 EVIISAPKTKASIRTVILPPSLIKTLAVYKETVDSEWMFPS-----PTDNGRPRNPSSVR 307

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
           + ++ +    G       H LRH+FAT  L +G D++++ + +GH   +TT  IY+++  
Sbjct: 308 KRLQLILERAG-CKKVRFHDLRHTFATMALEHGMDVKTLSATIGHVSSATTLDIYSHITD 366

Query: 304 KNGGDW 309
                 
Sbjct: 367 TMQRQA 372


>gi|260590882|ref|ZP_05856340.1| putative integrase [Prevotella veroralis F0319]
 gi|260537173|gb|EEX19790.1| putative integrase [Prevotella veroralis F0319]
          Length = 421

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 57/285 (20%), Positives = 104/285 (36%), Gaps = 25/285 (8%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           K T++++    + F +FL          +   +      R F+   R     + ++   L
Sbjct: 130 KATVRAFRDSRKNFALFLKTRGNGDCLPKEADKDLIEHYRLFM--LRDLGNKESTVSNRL 187

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +   ++   +++   E     +        +     E+ ALT  D   L +    + +
Sbjct: 188 RHLHQVIRKALQQRYIREDPFELID-------IETPTYERNALTSDDLHKLLSYRPHRSV 240

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           D     I  L    GL  S+   L   ++    D +  + +     + R +  L  + + 
Sbjct: 241 DNHCRLIFLLGCFTGLAFSDLKKLRMDDVYTLDDGRRYISLCRTKTQNRSIVPLLPIAEE 300

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS--TTAHTLRH 267
           IL        +  L  + P              F R IR +    GLP     T+HT RH
Sbjct: 301 ILTIVSDGQKEGLLFREFP----------TNSHFNRKIRDIIIKAGLPSHTEATSHTARH 350

Query: 268 SFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +FAT   L NG  + ++  +LGH  +STT++Y  V+       M 
Sbjct: 351 TFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKSKIAREMQ 395


>gi|327474234|gb|EGF19641.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK408]
          Length = 357

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 109/326 (33%), Gaps = 45/326 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  +  +F  ++            +I +  +  +S  ++ AFI   R +   
Sbjct: 34  YSFTTLYEYLKEYDRFFNWVLESGITDASHIAEIPLSVLENMSKKDMEAFILYLRERPLL 93

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                   +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 94  NANTTQNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATKKKKETLAA 153

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA--------RNSAILYLLYGCGLRIS 171
           +  N   +     +    +  +      +              R+ AI+ LL   G+R+S
Sbjct: 154 RAENIKQKLFLGDETEGFLQYIDREYPKKLSNRALSSFNKNKERDLAIIALLLASGVRLS 213

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           EA++L  ++I      + +  KG K   V +       + EY  +             F 
Sbjct: 214 EAVNLDLKDINLKMMVIEVTRKGGKRDSVNVAAFAMSYLEEYLSIRSKRYKAEKTDTAFF 273

Query: 232 ----GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +        +  T H LRH+ AT L         +   L
Sbjct: 274 LTEYRGNPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQL 331

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH     T +YT++ +    + + ++
Sbjct: 332 GHASTQVTDLYTHIVNDEQKNALDKL 357


>gi|229119225|ref|ZP_04248533.1| Integrase-recombinase [Bacillus cereus Rock1-3]
 gi|228664222|gb|EEL19755.1| Integrase-recombinase [Bacillus cereus Rock1-3]
          Length = 390

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 65/307 (21%), Positives = 116/307 (37%), Gaps = 34/307 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEE--------KITIQTIRQLSYTEIRAFISKRRT 80
           +   + T +SY  +   F   +  + EE        +     ++ L    +R + +  + 
Sbjct: 81  KNRKEDTKKSYVSEILSFCQCMVQHAEEFELNGEEVQQNDSLLKTLQPWHVRRYNAWLKQ 140

Query: 81  -------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--NLKKSNSLPRALNE 131
                        +L +    I+SFLK+L             ++  N+ + +   R L+ 
Sbjct: 141 VENGRNGDTYAVATLAKKSVLIRSFLKHLHVFAYIERPLHEELQRANVNEQDRPNRDLSY 200

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRI 190
            + + ++                 N  IL  L   G RI E  +   ++   D +  L++
Sbjct: 201 DEVMKILGFYKEQG-------HLVNYTILLALASTGARIQELCTARVKDLHYDGKYWLKV 253

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            GKGDK+R + +   + + I E      F   LN   + P+F   RG   NP      + 
Sbjct: 254 TGKGDKVRELFIPEHLFQCISEMRRRRGFQTVLNRGDESPVFINQRGNFYNPKTLSNQVT 313

Query: 249 QLRRYLGLPL------STTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTNV 301
            + +   L        + TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   
Sbjct: 314 DMIKKTNLDFLKYRENTVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEK 373

Query: 302 NSKNGGD 308
           + K   +
Sbjct: 374 HMKRKNN 380


>gi|53720954|ref|YP_109940.1| putative bacteriophage integrase [Burkholderia pseudomallei K96243]
 gi|52211368|emb|CAH37357.1| putative bacteriophage integrase [Burkholderia pseudomallei K96243]
          Length = 284

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/261 (19%), Positives = 109/261 (41%), Gaps = 17/261 (6%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILN 115
              + I  L   ++R +++ R    + + ++KR L  + + + +++     ++  +   +
Sbjct: 33  FGGRAISALKRVDVRKYVAVRLADGVQESTVKRELKFLSAAINFVRLECDCSDLPNPAQS 92

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +  L       R ++  +A  L+    L  S   K     N   + L    G R +E L+
Sbjct: 93  L-GLNGGEHRVRWISRAEASALI----LSASAYAKRPHLAN--FVRLALSTGCRKNELLA 145

Query: 176 LTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
           L    +  + S LR+     K  K R+VPL  +   A+ +       +   +    +F  
Sbjct: 146 LDWCRVDFEHSFLRLNAEHTKNGKRRVVPLNSAALSALRD--QRDWVERKCSGSEWVFPA 203

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
             GK +     Q+        +G+  +   H LRH+FA+ L+  G  L  ++ +LGH  +
Sbjct: 204 WSGKRI--QTLQKGFNAACARVGIE-NFRIHDLRHTFASWLVMEGVSLYVVKDLLGHSSI 260

Query: 293 STTQIYTNVNSKNGGDWMMEI 313
           + T+ Y +++   G   + ++
Sbjct: 261 TVTERYAHLSPDQGRAAVQKL 281


>gi|312897736|ref|ZP_07757152.1| site-specific recombinase, phage integrase family [Megasphaera
           micronuciformis F0359]
 gi|310621120|gb|EFQ04664.1| site-specific recombinase, phage integrase family [Megasphaera
           micronuciformis F0359]
          Length = 361

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 57/303 (18%), Positives = 107/303 (35%), Gaps = 41/303 (13%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             TL SY    R +++        +I    +  L+   IR  ++  + + +  R+++   
Sbjct: 73  PSTLDSYRNVIRHYIV-------PEIGTIKLVDLTAPTIRRLLT-IKMETLSSRTVRYIH 124

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNEKQALTLVDNVLLHTSHETKW 151
           + + + LK     +I   +    +R  K         L   +    +          +K 
Sbjct: 125 TLLNAMLKQAVLDEIIATNAAAKVRKPKLHRTKEMVTLTADEVKLFL----------SKI 174

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----------------GKGD 195
               +  +  L +  GLR SE L L   N+  D+ T+ I                     
Sbjct: 175 PIPEHHMLFKLAFASGLRRSELLGLPWSNVDLDKKTITITQTVIKIDNEAVISETTKNAS 234

Query: 196 KIRIVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
             R + L       + ++            N      +F G  GKP+ P    +  ++  
Sbjct: 235 SRRSITLDDETIAELKKHAQRVKATRLASPNWVHNDLVFPGKDGKPIFPDSVSQLCKRYA 294

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWM 310
             +G P S + H  RH+ AT L+  G + + IQ  LGH   + T   Y+++      D +
Sbjct: 295 AQIGKP-SFSMHGTRHTHATLLIEAGVNFKVIQVRLGHSSFTETMNTYSHLTPTMEYDAV 353

Query: 311 MEI 313
            +I
Sbjct: 354 EKI 356


>gi|228918167|ref|ZP_04081671.1| Integrase-recombinase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228841447|gb|EEM86586.1| Integrase-recombinase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 390

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 65/301 (21%), Positives = 113/301 (37%), Gaps = 34/301 (11%)

Query: 35  TLQSYECDTRQFLIFLAFYTEE--------KITIQTIRQLSYTEIRAFISKRRT------ 80
           T +SY  +   F   +  + EE        +     ++ L    IR F    +       
Sbjct: 87  TKRSYVSEILSFCKCMVQHAEEFEVSGEEVQRNASLLKTLQPWHIRKFNYWLKNVQNGRG 146

Query: 81  -QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--NLKKSNSLPRALNEKQALTL 137
                  +L +    I+SFLK+L       +     ++  N+ + +   R L+ ++ + +
Sbjct: 147 GNTYAVATLAKKTVLIRSFLKHLHVFGYIEKPLHEELQRANVNEKDRPNRDLSYEEVMKI 206

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQGKGDK 196
           +           +     N  I+  L   G RI E  +   ++   D +  L+++GKGDK
Sbjct: 207 LGFY-------KERGHLINYTIILALASTGARIQELCTARVKDLHYDGKYWLKVRGKGDK 259

Query: 197 IRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            R + +   + + I E      F   L    + PLF   RG   N       +  + +  
Sbjct: 260 FRELFVSEHLYQCICEVRRRRGFQTVLEKGDESPLFINQRGSAYNSKTLSNQVTDMIKKT 319

Query: 255 GLPL------STTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            L          TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + K   
Sbjct: 320 NLEFLQYRENPVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKRKN 379

Query: 308 D 308
           +
Sbjct: 380 N 380


>gi|196043090|ref|ZP_03110329.1| transposition regulatory protein TnpA [Bacillus cereus 03BB108]
 gi|196048087|ref|ZP_03115265.1| transposition regulatory protein TnpA [Bacillus cereus 03BB108]
 gi|228950293|ref|ZP_04112469.1| Tn554-related, transposase A [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|196021343|gb|EDX60072.1| transposition regulatory protein TnpA [Bacillus cereus 03BB108]
 gi|196026574|gb|EDX65242.1| transposition regulatory protein TnpA [Bacillus cereus 03BB108]
 gi|228809380|gb|EEM55825.1| Tn554-related, transposase A [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 372

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 59/348 (16%), Positives = 135/348 (38%), Gaps = 78/348 (22%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+ L+   G S+ T ++Y    +Q+ ++L        T +  +++   ++  F+   R
Sbjct: 29  KYLKYLDST-GKSRNTQKTYCYALKQYFLYLRE------TEKNYKEIKLEDLADFVGWLR 81

Query: 80  --------------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTES-------------- 111
                           K  ++++  +++ + +F  YL + +  ++               
Sbjct: 82  HPYTSLNVASITPVKSKKTEKTVNLTVTAVTNFYDYLYRNEEISKDMNEKLMRQIYAGGR 141

Query: 112 ---------------NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
                          +I N+  +K+     + L ++Q               T   + R+
Sbjct: 142 TRYKSFLHHINKNKPSIRNVLKVKEPRKRIQILTKEQVRQTF----------TATTNIRD 191

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDD---QSTLRIQGKGD---------KIRIVPLLP 204
           + ++ LL+  GLRI EALSL  ++ + D      +R++ +G+           R + +  
Sbjct: 192 AFLIQLLFETGLRIGEALSLYLEDFIFDYKKGHRIRLRDRGELENGAKLKTGEREIFVSQ 251

Query: 205 SVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            +     +Y      +L++        L     G+P+N    +   ++LR+   +     
Sbjct: 252 HLMDLYDDYLYEIIDELDIETNFVFIKLRGRNMGRPMNYSDVESLFKRLRKKTKID--IH 309

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGD 308
            H LRH+ AT       D++ +Q  LGH ++ TT  +Y + + ++   
Sbjct: 310 PHLLRHTHATIYYQETKDIKQVQERLGHAQIQTTMNLYLHPSDEDIRK 357


>gi|51245456|ref|YP_065340.1| integrase/recombinase [Desulfotalea psychrophila LSv54]
 gi|50876493|emb|CAG36333.1| related to integrase/recombinase [Desulfotalea psychrophila LSv54]
          Length = 357

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 98/260 (37%), Gaps = 17/260 (6%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNL 119
           +++  +    +  +   R+ +   + +++  L+ +       +K   +  ++ + ++  +
Sbjct: 103 RSLADIRPALVAQYQLTRQKEGYSNSAIRTELAILSKMYNNARKIWGLNIKNPVNDITRV 162

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
                  R L   +A  ++D             + +    + LL   G+R SE   L P+
Sbjct: 163 PPDKGNTRFLTTAEAKIVLDES-------KNIRNPKFYPFVLLLMHTGMRSSEVARLRPE 215

Query: 180 NIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           +I  +  +LRI   K    R VPL     + +            L          +   L
Sbjct: 216 DINFETLSLRIHETKSGIPRSVPLTTKAAEVLQTVSPEATGYYFLKENH---LNQKDIRL 272

Query: 239 NP----GVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            P        R +R+     G        H LRH+ A+HLL  G D+R +  ILGH  L+
Sbjct: 273 APAKAFSSCWRSLRKKMEASGHKIPHFRPHDLRHTAASHLLMAGVDIREVADILGHSTLA 332

Query: 294 TTQIYTNVNSKNGGDWMMEI 313
            T  YT++      + + +I
Sbjct: 333 MTMRYTHLLDSRRQETISKI 352


>gi|224025008|ref|ZP_03643374.1| hypothetical protein BACCOPRO_01742 [Bacteroides coprophilus DSM
           18228]
 gi|224018244|gb|EEF76242.1| hypothetical protein BACCOPRO_01742 [Bacteroides coprophilus DSM
           18228]
          Length = 389

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 65/317 (20%), Positives = 116/317 (36%), Gaps = 44/317 (13%)

Query: 15  LKERQNWLQNLE---IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            KE   +L+       ER  +  +  ++    R  L +L  Y +E    + I        
Sbjct: 89  FKEDTPFLEYYRKMVEERRKNPDSQGNWGNW-RSCLRYLEIYCDENTLFRDITPDFIIGF 147

Query: 72  RAFISK-----------RRT----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           + F+             RR     Q +   S     + +++ +    + +I + + +  +
Sbjct: 148 KEFLENVEKDTHKRTGPRRERDTFQGLSQNSKVSYFNKLRACINKAYEERIISINPLRGI 207

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              K +      L  ++   L        S   ++   + + +   L   GLR S+   L
Sbjct: 208 EGFKAAEVKREYLTLEEVKKL-------ASTPCRYPVLKRAFLFSCL--TGLRKSDIQKL 258

Query: 177 TPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
           T   I    +  RI   Q K   +  + + P   K + E+          N + P+F G 
Sbjct: 259 TWSEIQKFGNFTRIVFNQKKTGGLEYLDITPQAEKYLGEH---------KNPKEPVFSGF 309

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
                     QR+        G+  + T H  RH+FA  +L  G D+ ++  +LGH  LS
Sbjct: 310 TYGAWTSLELQRWSMN----AGIQKNLTFHCGRHTFAVLMLDLGADIYTVSKLLGHRELS 365

Query: 294 TTQIYTNVNSKNGGDWM 310
           TTQIY  V  KN  + +
Sbjct: 366 TTQIYAKVLDKNKQNAV 382


>gi|154492804|ref|ZP_02032430.1| hypothetical protein PARMER_02443 [Parabacteroides merdae ATCC
           43184]
 gi|154087109|gb|EDN86154.1| hypothetical protein PARMER_02443 [Parabacteroides merdae ATCC
           43184]
          Length = 310

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 95/286 (33%), Gaps = 23/286 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T  +     +Q   F+    EE I    +  L+      +    + +     ++ + 
Sbjct: 43  SEGTYSNNRISDKQLDAFVRSRGEEDIL---LTALTMDFFDDYRFHLKKEGYAPATINKH 99

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L  +   +     +     +     +        PR L++     L+   L     E   
Sbjct: 100 LCWLSRLMYRAVSQGTIRFNPFEEAKYEAVERK-PRFLSKGDVAKLLAFPLQDEGAELS- 157

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRI-QGKGDKIRIVPLLPSVR 207
                  +       GL  ++  SL         + +  +R  + K +   ++PL P   
Sbjct: 158 -----RRMFLFSVFTGLAFADLQSLRVSQIEKNNEGKRYIRKARQKTEVESLIPLHPIAE 212

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + +  Y               +F       ++ G    +++ +    G+    T H  RH
Sbjct: 213 QILSLY-----TKEESKGDYKIFPDT----MSKGKLLTHLKAVGWACGIRTPLTWHVGRH 263

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           SF T  L  G  + SI  ++GH  +++TQIY  +  +     M  +
Sbjct: 264 SFGTLTLEAGIPIESIAKMMGHSSIASTQIYAQITDQKIARDMERV 309


>gi|91218172|ref|ZP_01255121.1| putative integrase/recombinase Y4QK [Psychroflexus torquis ATCC
           700755]
 gi|91218500|ref|ZP_01255439.1| putative integrase/recombinase Y4QK [Psychroflexus torquis ATCC
           700755]
 gi|91183331|gb|EAS69735.1| putative integrase/recombinase Y4QK [Psychroflexus torquis ATCC
           700755]
 gi|91183719|gb|EAS70113.1| putative integrase/recombinase Y4QK [Psychroflexus torquis ATCC
           700755]
          Length = 203

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/196 (27%), Positives = 94/196 (47%), Gaps = 22/196 (11%)

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
           + +  +K+ N LP  LN+K+   L+                ++  +L +LYGCGLR  E 
Sbjct: 8   IQLPQIKRQNDLPIVLNKKEVRELLKA----------PKYLKHQLMLAMLYGCGLRSYEL 57

Query: 174 LSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
            +L   +I  ++ T+ ++  KG   R VPL   + + + +Y+         N    +F  
Sbjct: 58  CNLLQADIDFERKTVFVKKQKGKIDRYVPLSAHLIRGLQKYF------KTENPVKHVFNS 111

Query: 233 IRGK-----PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
            +       P+     Q  I++ R  +      TAHTLRHS+ATHLL +G ++  ++ +L
Sbjct: 112 QKTTDCLPGPITTRALQWVIKECRPKVNTQKKFTAHTLRHSYATHLLEDGLNIMCLKELL 171

Query: 288 GHFRLSTTQIYTNVNS 303
           GH  + TT +Y  V++
Sbjct: 172 GHAHIETTIVYLQVSN 187


>gi|218296123|ref|ZP_03496892.1| integrase family protein [Thermus aquaticus Y51MC23]
 gi|218243500|gb|EED10029.1| integrase family protein [Thermus aquaticus Y51MC23]
          Length = 377

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 64/328 (19%), Positives = 131/328 (39%), Gaps = 34/328 (10%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT-EEKITIQTIR 64
           L E     +    ++WL+    E  +   TL+SY     + +  L   T  ++     ++
Sbjct: 63  LAEPAQITVRDWAEDWLKRKAAE--VRPRTLESYRYHLAKAIPSLRDPTAHDRFGRMRLQ 120

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            +    +R  +   R      ++++  L  +    +   + ++   + +  ++       
Sbjct: 121 SVQPLHVRRHLDGLRLTPHAMKNIRWLLHAV---FEDAVRMELIHRNPVAPVKVKGPPRK 177

Query: 125 LP-RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            P R L   +A  L+  +  H S          +  L L+  CGLR  EAL L  +++  
Sbjct: 178 SPGRTLEPDEARRLLAALDAHPS--------TLALALRLMLTCGLRRGEALGLKWEDVDL 229

Query: 184 DQSTLRIQGKGDKI---------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQ-L 227
            +  L ++    K+               R VP+ P+  + +  Y +         +Q  
Sbjct: 230 KEGILHVRRAWAKVGGKGVISEPKTSSGYRAVPIPPTTLERLRAYRESVQGLSEEEVQRS 289

Query: 228 PLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
            LF G    +P++P     ++R+L   LGLP     H LRH++ + LL++G  +  +   
Sbjct: 290 WLFPGRDPSQPVHPDAPDHFLRRLLARLGLPQ-VRVHDLRHTYGSLLLAHGAPVELVAER 348

Query: 287 LGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
           +GH   + T  IY ++  +    W+++I
Sbjct: 349 MGHANPNITLGIYRHLLEEERRGWVLDI 376


>gi|319777296|ref|YP_004136947.1| integrase [Mycoplasma fermentans M64]
 gi|318038371|gb|ADV34570.1| Integrase [Mycoplasma fermentans M64]
          Length = 253

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 108/282 (38%), Gaps = 35/282 (12%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           K T+ +Y+   + F           +  + I + +    + ++     +     S+   +
Sbjct: 3   KNTINAYKSAIKLF----------NLKYEEINKKNLLLFKTYLI----ENYKPNSVNLKI 48

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +  +L+++KK         L ++ +K              ++  D V L    + + +
Sbjct: 49  QALNRYLEFIKKD-------TLKLKFIKVQQKT----FIDNVISDADYVFLKRKLKKESL 97

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           D     ++  L   G R+SE + +  +++      + I  KG K R + +   ++K  + 
Sbjct: 98  DW--YFVVRFLAATGARVSELIKIKVEHVKL--GYIDIYSKGGKARRIYIPLKLKKEAII 153

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFAT 271
           + +    +        +F    GK +      + +++     G+ P     H+ RH FA 
Sbjct: 154 WLENKCLN-----SGYIFLNRFGKAITTRGISQQLKKYALKFGINPKVVYPHSFRHRFAK 208

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           + L    D+  +  ++GH  + TT+IY    S    + + +I
Sbjct: 209 NFLEKYNDISFLADLMGHESIETTRIYLRKTSNEQQEIVDKI 250


>gi|126667755|ref|ZP_01738723.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126668748|ref|ZP_01739697.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126669116|ref|ZP_01740045.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126669148|ref|ZP_01740074.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126626381|gb|EAZ97052.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126626412|gb|EAZ97080.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126626785|gb|EAZ97433.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126627858|gb|EAZ98487.1| integrase/recombinase [Marinobacter sp. ELB17]
          Length = 409

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 60/313 (19%), Positives = 118/313 (37%), Gaps = 26/313 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M G   PE        + + + ++L   RG  + T++      R FL F+          
Sbjct: 109 MNGTFQPEP-------QLKAFAEHLRQHRGNPEGTIKKKLAHIRYFLAFMGARH------ 155

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL- 119
           ++++ L  T+I AF+    +++    +       ++ +L++L             +    
Sbjct: 156 RSLQDLLLTDIDAFLMAC-SKRYARTTTADIGCSLRRYLRFLLTTGQLPNDLASFVVTPV 214

Query: 120 --KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             +    L RAL     L ++             +  R+  +L L+   GL   E + LT
Sbjct: 215 IRRYEQPL-RALPWADVLRIL-----SAIDRKTPVGLRDYTVLLLMSCYGLGAGEVIRLT 268

Query: 178 PQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
             +I    +TL + + K      +PLLP++ +A++ Y             L L       
Sbjct: 269 LDDIGWQAATLHVVRPKTGVAFALPLLPALARALVSYLKRGRPRRTPTRHLFLSMRAPHY 328

Query: 237 PLNPGV-FQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           PL+     +  +    R  G+  +   +H LRH+ A   +      + I  ILGH   ++
Sbjct: 329 PLSASSAVRHMLVGYARTAGVTAAYLGSHVLRHTHACRQMELETSPKVISDILGHRSPAS 388

Query: 295 TQIYTNVNSKNGG 307
              Y  +++K+  
Sbjct: 389 LSAYLRIDTKHLR 401


>gi|126698677|ref|YP_001087574.1| integrase [Clostridium difficile 630]
 gi|115250114|emb|CAJ67935.1| Integrase Tn1549-like, CTn4-Orf34 [Clostridium difficile]
          Length = 397

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/294 (18%), Positives = 114/294 (38%), Gaps = 38/294 (12%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +    E+K+    I  +  ++ + +  + + +  G +++      +K+      +     
Sbjct: 110 MRILQEDKLGACRIENVKLSDAKEWALRMKEKGYGFKTINNHKRSLKAAFYTAIQDDCIR 169

Query: 110 ESNI-LNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     +  + + ++ P+  L+  Q    +  V     H+  +    +  I+  L G G
Sbjct: 170 KNPFDFQLNTVLEDDTEPKEPLSPTQEAAFLSFV----QHDKVYQKYYDEIII--LLGTG 223

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAIL 211
           LRISE   LT  +I  D+  + +                       RI+P+   V +A  
Sbjct: 224 LRISELCGLTEADIDLDKQLINVDHQLLKIADVGYYVETPKTKSGNRIIPMSEKVLEAFQ 283

Query: 212 EYYDLCPFDLNL---NIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGLPLST 260
              +   +   +        LF    G P        +  G+ ++Y +   + + LP   
Sbjct: 284 RVLNKRKYTQPVILEGYTKFLFLNRNGLPKVAVNYESMFRGLVRKYNKT--QKVALPKVM 341

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           T HTLRH+F T L + G + +++Q I+GH  ++ T   Y +  S+     M  +
Sbjct: 342 TPHTLRHTFCTTLANAGMNPKALQYIMGHSNINMTLNYYAHTTSETSITEMKRL 395


>gi|86605557|ref|YP_474320.1| phage integrase family site specific recombinase [Synechococcus sp.
           JA-3-3Ab]
 gi|86554099|gb|ABC99057.1| site-specific recombinase, phage integrase family [Synechococcus
           sp. JA-3-3Ab]
          Length = 309

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 70/303 (23%), Positives = 114/303 (37%), Gaps = 45/303 (14%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +LQ  E +R L+  + ++Y     QF          K     + Q+  + +++F++  +
Sbjct: 10  QFLQ--ERQRDLAPASRRTYRIALEQFA---------KTCPVPLPQVQPSHVQSFLNSLK 58

Query: 80  TQK------------IGDRSLKRSLSGIKSFLKYLKKRKITTES-NILNMRNLKKSNSLP 126
            +                 +       ++ F ++  +R    +      +R       LP
Sbjct: 59  GRPFRNRSGQWVHPPASPATYNLKRLALQQFFEWASQRGYFPDPLPTQAIR----PARLP 114

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DD 184
             L       L+  VL      +     R +A++ LL  CGLR  E L LT Q+     +
Sbjct: 115 ARLPRDLDRLLLQRVLQRAQSHS----LRYAALIRLLLECGLRAQELLDLTVQDFQISPE 170

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI------RGKP 237
            S L ++ GKG K R V +   + + + +Y              PLF         RG+P
Sbjct: 171 GSLLEVRCGKGSKPRAVAVGDPLSELLQQYLSRERGPCA--PTDPLFVSQSRCPAYRGRP 228

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L     +  + +L      P   T H  RHSFAT LL  G     IQ +LGH   + T  
Sbjct: 229 LTYDGLRHIVLKLTE--PEPGHQTPHQFRHSFATLLLDRGVAPEHIQHLLGHTTAAMTMR 286

Query: 298 YTN 300
           YT 
Sbjct: 287 YTQ 289


>gi|37679961|ref|NP_934570.1| integrase [Vibrio vulnificus YJ016]
 gi|37198707|dbj|BAC94541.1| integrase [Vibrio vulnificus YJ016]
          Length = 402

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 108/274 (39%), Gaps = 29/274 (10%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           + ++ + + +++  +I+ ++++R        ++  + + +++      +       ++ N
Sbjct: 135 KHLSTKPLVEITAWDIQQWVAERSKAGRAPATISYAYNRLRAVFNRAVEWGFIDSHSLDN 194

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSH--ETKWIDARNSA--------------I 159
           ++  +  N   R L+  +   L++++    +   +         A              +
Sbjct: 195 VKIPRIDNKRIRYLSVSEEAALLESLKARDARLKDEALQRYGKRAQRLVSQRYVDFLEPL 254

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDL 216
           + L    G+R  E LSL   +I  +   L I+    K    R +PL  +V   +  ++  
Sbjct: 255 IVLALNTGMRKGEILSLKWSHINMEDRYLTIRSENAKSKNKRTIPLNNTVYTMLQAWH-- 312

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
                  N    L     GKPL+   +Q     L +  G+  +   H LRH FA+ L+  
Sbjct: 313 -----EQNPDTELVFERNGKPLD--SYQYQWESLLKEAGIE-NFRFHDLRHHFASKLVMK 364

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
             DL  ++ +LGH  L  T  Y ++  ++    +
Sbjct: 365 EADLNVVRELLGHADLKMTLRYAHLAPEHKASAV 398


>gi|54308887|ref|YP_129907.1| integrase-recombinase [Photobacterium profundum SS9]
 gi|46913317|emb|CAG20105.1| hypothetical integrase-recombinase [Photobacterium profundum SS9]
          Length = 180

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/156 (32%), Positives = 76/156 (48%), Gaps = 4/156 (2%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLC 217
               LY  GLR+ E LSLT  +I      + I+ GKG K R+VP+      A+  ++   
Sbjct: 14  FFLTLYTMGLRLGEGLSLTVHDIDQHTMQVHIRDGKGGKDRLVPVPQRTLNALRAHWLTH 73

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
                  +  P        P++ G  Q+ ++ + +  G+    + H+LRH FATHLL  G
Sbjct: 74  RH---PRLIFPGKGCNTDNPMDRGGVQKAMKLVLKDCGINKPISPHSLRHCFATHLLEQG 130

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            DLRS+Q +LGH  L+TT  YT +      D  + I
Sbjct: 131 LDLRSLQILLGHASLNTTARYTRMTQIKQRDAALAI 166


>gi|303237560|ref|ZP_07324124.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302482279|gb|EFL45310.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 410

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 65/286 (22%), Positives = 109/286 (38%), Gaps = 24/286 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           SK +LQ Y    R F  FL + Y ++ I +         +   ++S          +  +
Sbjct: 129 SKDSLQKYSVLRRHFAEFLIYKYGKKDIGLAEFTPSVVQDFELYLST--AAGCAYNTSVK 186

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L  +K+   Y +KR        LN R   +  +    L +++ + + +  L       +
Sbjct: 187 KLKALKTVTIYAQKRGYLLHDPFLNHRFHLEPVNR-GFLTDEEIMKIANKEL----DIHR 241

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVR 207
               R+  I       GL   +  +LTP NI    D Q  +  + K      V LL   +
Sbjct: 242 LELVRDVFIFSCF--TGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPK 299

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             I +Y      D           G     L       Y++++    G+  + T H  RH
Sbjct: 300 SIIAKYSHKTYRD-----------GKLFPILTNQKTNAYLKEIADICGIKKNLTFHLARH 348

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +FAT  LS G  + S+  +LGH  + TTQIY  + +K     M ++
Sbjct: 349 TFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQL 394


>gi|300775803|ref|ZP_07085664.1| integrase [Chryseobacterium gleum ATCC 35910]
 gi|300505830|gb|EFK36967.1| integrase [Chryseobacterium gleum ATCC 35910]
          Length = 416

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 66/326 (20%), Positives = 112/326 (34%), Gaps = 35/326 (10%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIER----GLSKL-TLQSYECDTRQFLIFLAFYTE 55
           ME   +         K  + +L +   E+    GL    T   Y+   R    F+   T+
Sbjct: 106 MESGEM------TFFKFYEQFLSD--YEKKVNSGLRVNGTRSKYKTLLRHLRNFV--LTK 155

Query: 56  EKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
              +  +   L+   ++ F    R  Q +   ++   + G  +  +    RK    +   
Sbjct: 156 YGYSDVSFNDLTPEFVQDFDYYLRDDQSLTHNTIWLYMIGFTTLCRLAMSRKHLAFNPFS 215

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
             +N KK       L   +   LV      T +  K  D     +       GL  S+  
Sbjct: 216 EYKNTKKDKDR-GYLLRNELEQLV------TFNCEKKKDELVKDLFVFSCFTGLSYSDMK 268

Query: 175 SLT---PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            L     Q+  D    + I+ K        +L  + K I+E Y     D  +        
Sbjct: 269 GLRNSNIQDFFDSNQWIIIRRKKTATSSNVMLLDIPKMIIEKYAGFSKDGKVFPV----P 324

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
                  +     + I  L+         T H  RH+FAT  LS G  L S+  +LGH  
Sbjct: 325 SNTVCNDSLKRISQQIECLKE-----KKVTFHLARHTFATLFLSEGVPLESLSKMLGHKN 379

Query: 292 LSTTQIYTNVNSKNGGDWMMEIYDQT 317
           ++TTQIY  + ++  G  M ++  + 
Sbjct: 380 IATTQIYAKILNEKVGKDMQKVSHKF 405


>gi|324991160|gb|EGC23094.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK353]
          Length = 357

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/326 (15%), Positives = 110/326 (33%), Gaps = 45/326 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  +  +F  ++            +I +  +  ++  ++ AFI   R +   
Sbjct: 34  YSFTTLYEYLKEYDRFFNWVLESGITDASHIAEIPLSVLENMTKKDMEAFILYLRERPLL 93

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                   +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 94  NANTTQNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATKKKKETLAA 153

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA--------RNSAILYLLYGCGLRIS 171
           +  N   +     +    +  +      +              R+ AI+ LL   G+R+S
Sbjct: 154 RAENIKQKLFLGDETEEFLQYIDTEYPKKLSNRALSSFNKNKERDLAIIALLLASGVRLS 213

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLF 230
           EA++L  ++I      + +  KG K   V +    +  + +Y  +              F
Sbjct: 214 EAVNLDLKDINLKMMVIEVTRKGGKRDSVNVAAFAKPYLEDYLSIRSKRYKAEKTDTAFF 273

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +        +  T H LRH+ AT L         +   L
Sbjct: 274 LTEYRGTPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQL 331

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH     T +YT++ +    + + ++
Sbjct: 332 GHASTQVTDLYTHIVNDEQKNALDKL 357


>gi|322389574|ref|ZP_08063123.1| phage integrase family integrase/recombinase [Streptococcus
           parasanguinis ATCC 903]
 gi|321143700|gb|EFX39129.1| phage integrase family integrase/recombinase [Streptococcus
           parasanguinis ATCC 903]
          Length = 356

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 59/357 (16%), Positives = 126/357 (35%), Gaps = 51/357 (14%)

Query: 1   MEGNNLPEIVSFELLKERQNW--LQNLEIERG--LSKLTLQSYECDTRQFLIFL------ 50
           M+ + L E +  + LK+   W  L+  + +     S  TL  Y  +  +F  ++      
Sbjct: 1   MKRDILLERI--DKLKQVMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFTWVLESGIS 58

Query: 51  AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ----------KIGDRSLKRSLSGIKSFLK 100
              T  +I +  +  ++  ++ +FI   R +           +   ++ R+LS + S  K
Sbjct: 59  DADTMAEIPLDVLEHMTKKDMESFILYLRERPLLNANTTKNGVSQTTINRTLSALSSLYK 118

Query: 101 YLKKRKITTESNILNMRNL---------------KKSNSLPRALNEKQALTLVDNVLLHT 145
           YL +     +      RN+               +  N   +     +    ++ +    
Sbjct: 119 YLTEEVENEQGEPYFYRNVMKKVATKKKKETLAARAENIKQKLFLGDETEGFLNYIDQEY 178

Query: 146 SHETKWIDA--------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                            R+ AI+ LL   G+R+SEA++L  +++      + +  KG K 
Sbjct: 179 PQTLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKR 238

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIR---GKPLNPGVFQRYIRQLRRY 253
             V +    +  + +Y  +             LF  +       ++    ++ + +    
Sbjct: 239 DSVNVAAFAKPYLEQYLAIRDKRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSE- 297

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               +  T H LRH+ AT L         +   LGH     T +YT++ +    + +
Sbjct: 298 -DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNAL 353


>gi|228949488|ref|ZP_04111742.1| Integrase-recombinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228810211|gb|EEM56578.1| Integrase-recombinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 390

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 64/307 (20%), Positives = 114/307 (37%), Gaps = 34/307 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEE--------KITIQTIRQLSYTEIRAFISKRRT 80
           +     T +SY  +   F   +  + EE        +     ++ L    IR F    + 
Sbjct: 81  KNRKDDTKRSYVSEILSFCKCMVQHAEEFEVSGEEVQRNASLLKTLQPWHIRKFNYWLKN 140

Query: 81  -------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--NLKKSNSLPRALNE 131
                        +L +    ++SFLK+L       +     ++  N+ + +   R L+ 
Sbjct: 141 VQNGRGGNTYAVATLAKKTVLLRSFLKHLHVFGYIEKPLHEELQRANVNEKDRPNRDLSY 200

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRI 190
           ++ + ++           +     N  I+  L   G RI E  +   ++   D +  L++
Sbjct: 201 EEVMKILGFY-------KERGHLINYTIILALASTGARIQELCTARVKDLHYDGKYWLKV 253

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           +GKGDK R + +   + + I E      F   L    + PLF   RG   N       + 
Sbjct: 254 RGKGDKFRELFVSEHLYQCICEVRRRRGFQTVLEKGDESPLFINQRGSAYNSKTLSNQVT 313

Query: 249 QLRRYLGLPL------STTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTNV 301
            + +   L          TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   
Sbjct: 314 DMIKKTNLEFLQYRENPVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEK 373

Query: 302 NSKNGGD 308
           + K   +
Sbjct: 374 HMKRKNN 380


>gi|156740071|ref|YP_001430200.1| integrase family protein [Roseiflexus castenholzii DSM 13941]
 gi|156231399|gb|ABU56182.1| integrase family protein [Roseiflexus castenholzii DSM 13941]
          Length = 337

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 71/320 (22%), Positives = 120/320 (37%), Gaps = 44/320 (13%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           +  T+ +Y    R F  + A    +++    +  ++ +++ A+I       + D ++   
Sbjct: 25  APSTIATYCNAWRSFAAW-AHCEGKRV----VADIAASDLGAWIDSL--NGMADGTVLTY 77

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL-----NEKQALTLVDNVLLHTS 146
             G  +  K+L  R        L +  L   ++LPRA      +      LV        
Sbjct: 78  GHGALAICKFLADRGHLRCD--LALLRLHLRDALPRAYAGRAPDVPDLRRLVTFYDGELP 135

Query: 147 --------HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR----IQGKG 194
                      +    RN+A+L+ L+  G RISE LSL   ++  D   +     + GKG
Sbjct: 136 AGEPGSRAERNRLNMLRNAALLHTLFSTGARISEVLSLNVGDVRADNGRIVPRAFVIGKG 195

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK--PLNPGVFQRYIRQLR- 251
            + R V L    ++AIL Y             L +  G RG    L        +     
Sbjct: 196 QRRRAVFLRAHAQQAILRYLHARHAAFPRADALFISHGPRGAGGRLGRIAAWEIVTGAAH 255

Query: 252 ------------RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                       R      + T HT RH  AT LL+ G  L  + +ILGH     T+ Y 
Sbjct: 256 RVADQIECEGRIREARALRTVTPHTFRHFVATWLLNEGAQLSEVSAILGHANTRITEQY- 314

Query: 300 NVNSKNGGDWMMEIYDQTHP 319
              +++  + + E++DQ  P
Sbjct: 315 --YARHTDEQLQELHDQFAP 332


>gi|431133|gb|AAC36983.1| ORF3 [Enterococcus faecalis]
          Length = 361

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 109/295 (36%), Gaps = 35/295 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +    ++K+ +++I  +  ++ + +  +        +++      +K+      +     
Sbjct: 66  MDILKKDKLGVRSIDSIKPSDAKEWAIRMSENGYAYQTINNYKRSLKASFYIAIQDDCVR 125

Query: 110 ESNI-LNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     ++ +   +++P+  L E+Q   L+         +     ++N   + +L   G
Sbjct: 126 KNPFDFQLKAVLDDDTVPKTVLTEEQEEKLL------AFAKADKTYSKNYDEILILLKTG 179

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAIL 211
           LRISE   LT  ++  +   + I                       R VP++    +A  
Sbjct: 180 LRISEFGGLTLPDLDFENRLVNIDHQLLRDTEIGYYIETPKTKSGERQVPMVEEAYQAFK 239

Query: 212 EYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTA 262
                   D  + I      LF   +  P     +   ++ L +         LP   T 
Sbjct: 240 RVLANRKNDKRVEIDGYSDFLFLNRKNYPKVVSDYNGMMKGLVKKYNKYNEDKLP-HITP 298

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQ 316
           H+LRH+F T+  + G + +++Q I+GH  ++ T   Y +    +    M  +  +
Sbjct: 299 HSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMKRLNKE 353


>gi|323693661|ref|ZP_08107860.1| integrase [Clostridium symbiosum WAL-14673]
 gi|323502275|gb|EGB18138.1| integrase [Clostridium symbiosum WAL-14673]
          Length = 425

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 110/296 (37%), Gaps = 34/296 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +   +E+KI   +I  +  ++ + +  + + + +   ++      +K+      +     
Sbjct: 115 MKLLSEDKIGGASIDSVKLSDAKEWALRMQEKGVAYHTICNGKRSLKAIFHMAVQDDCLR 174

Query: 110 ESNI-LNMRNLKKSNSLPRA-LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     +  +   +++P+  L   Q   L+  +      ++  + A+    + +L   G
Sbjct: 175 KNPFDFQINEVINDDTVPKVPLTPAQEKELLGFM------QSDPVYAKYYDEVLILLETG 228

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAIL 211
           LR+SE   LTP ++  D+  + +                       R VP+  +  KA  
Sbjct: 229 LRVSELCGLTPADLNFDKRFVNVDHQLLRSTEDGYYIEAPKTDSGYRQVPMSAAAYKAFQ 288

Query: 212 EYYDLCPFDLNL---NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTA 262
                      +     +  LF    G P     +    + L +         LP   T 
Sbjct: 289 RVLHRRKDGKGVVVDGYKGFLFLNRDGLPKAAVNYDSMFQGLAKKFNKFHAEPLPEVMTP 348

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQT 317
           HT+RH+F T + + G + +++Q I+GH  +  T   Y +    +  + M  +  ++
Sbjct: 349 HTMRHTFCTRMANAGMNPKALQYIMGHSNIVMTLNYYAHATFHSAQEEMERLQAKS 404


>gi|327462214|gb|EGF08541.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK1]
          Length = 356

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 109/326 (33%), Gaps = 45/326 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  +  +F  ++            +I +  +  ++  ++ AFI   R +   
Sbjct: 33  YSFTTLYEYLKEYDRFFNWVLESGITDASHIAEIPLSVLENMTKKDMEAFILYLRERPLL 92

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                   +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 93  NANTTQNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATKKKKETLAA 152

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA--------RNSAILYLLYGCGLRIS 171
           +  N   +     +    +  +      +              R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETEGFLQYIDREYPKKLSNRALSSFNKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           EA++L  ++I      + +  KG K   V +       + EY  +             F 
Sbjct: 213 EAVNLDLKDINLKMMVIEVTRKGGKRDSVNVAAFAMSYLEEYLSIRSKRYKAEKTDTAFF 272

Query: 232 ----GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +        +  T H LRH+ AT L         +   L
Sbjct: 273 LTEYRGNPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH     T +YT++ +    + + ++
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNALDKL 356


>gi|256960289|ref|ZP_05564460.1| transposase [Enterococcus faecalis Merz96]
 gi|293382155|ref|ZP_06628098.1| transposase [Enterococcus faecalis R712]
 gi|293388533|ref|ZP_06633037.1| transposase [Enterococcus faecalis S613]
 gi|312905749|ref|ZP_07764771.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|312909055|ref|ZP_07767915.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|256950785|gb|EEU67417.1| transposase [Enterococcus faecalis Merz96]
 gi|291080438|gb|EFE17802.1| transposase [Enterococcus faecalis R712]
 gi|291082137|gb|EFE19100.1| transposase [Enterococcus faecalis S613]
 gi|310628228|gb|EFQ11511.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|311290617|gb|EFQ69173.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
          Length = 405

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 109/295 (36%), Gaps = 35/295 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +    ++K+ +++I  +  ++ + +  +        +++      +K+      +     
Sbjct: 110 MDILKKDKLGVRSIDSIKPSDAKEWAIRMSENGYAYQTINNYKRSLKASFYIAIQDDCVR 169

Query: 110 ESNI-LNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     ++ +   +++P+  L E+Q   L+         +     ++N   + +L   G
Sbjct: 170 KNPFDFQLKAVLDDDTVPKTVLTEEQEEKLL------AFAKADKTYSKNYDEILILLKTG 223

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAIL 211
           LRISE   LT  ++  +   + I                       R VP++    +A  
Sbjct: 224 LRISEFGGLTLPDLDFENRLVNIDHQLLRDTEIGYYIETPKTKSGERQVPMVEEAYQAFK 283

Query: 212 EYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTA 262
                   D  + I      LF   +  P     +   ++ L +         LP   T 
Sbjct: 284 RVLANRKNDKRVEIDGYSDFLFLNRKNYPKVASDYNGMMKGLVKKYNKYNEDKLP-HITP 342

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQ 316
           H+LRH+F T+  + G + +++Q I+GH  ++ T   Y +    +    M  +  +
Sbjct: 343 HSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMNRLEKK 397


>gi|29171481|ref|NP_808665.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28855974|gb|AAO59031.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 336

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 115/320 (35%), Gaps = 44/320 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q WL  L    G +  TL +Y      +L+       E         +++ ++  +I +
Sbjct: 17  VQQWLA-LLGNLGRAPATLDAYGRGLAHYLLHCEASGLEA------ESITFEQVTLYIRR 69

Query: 78  R---RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN---------------- 118
               +   + + +L + L+ I+ +  +L  +    ++ +   ++                
Sbjct: 70  LLPGQENAVANSTLHQRLTAIRLWYDHLVFQGRCAQNPVPRGQHGRLCQIPGHSGFMRGL 129

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           + +   LP   +++Q    +      +         R+  +L L Y   LR +E + L  
Sbjct: 130 VPRLIKLPDIPSDEQWRYFLSIAARSS--------IRDRLMLSLAYCGALRRAELVGLRI 181

Query: 179 QNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG--- 232
           +++      + ++    KG + R+V   P +   +  +       L    +  LFR    
Sbjct: 182 EDLDLAHRLISVRAETTKGRRSRVVCYSPDIAPILGTHLHA--LRLAGWSRGALFRSESD 239

Query: 233 -IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
             RG  L    + + + +      L    + HT RH   THL   G  L  + +  GH  
Sbjct: 240 RNRGSALTRWTWSKTVERWATDSNLSC-LSTHTFRHLRLTHLARAGWKLHELMAYAGHRD 298

Query: 292 LSTTQIYTNVNSKNGGDWMM 311
             TT IY +++  +    M 
Sbjct: 299 PKTTLIYVHLSGADLTAKMA 318


>gi|317055373|ref|YP_004103840.1| integrase family protein [Ruminococcus albus 7]
 gi|315447642|gb|ADU21206.1| integrase family protein [Ruminococcus albus 7]
          Length = 396

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/333 (15%), Positives = 117/333 (35%), Gaps = 54/333 (16%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQS--YECDTRQFLIFLAFYTEEKITIQTIRQ 65
           + + FE+  E+         E       L++  YE   +     L       I    + +
Sbjct: 65  KAIKFEVFAEQ-------WFEEYAKPN-LRNTTYERMLQ-----LRKRVYAAIGHLRMDK 111

Query: 66  LSYTEIRAFISKRRTQK--------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           ++  +I+AF++    +         +  ++++ +LS +     Y  K  + +++    + 
Sbjct: 112 ITPRQIQAFVNSLSKEGANERTGKPLAPKTIRHNLSFVSDVFAYGVKMGVISDNPCAKVT 171

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             K   +  +    +Q    +   LL+          +      L+   G R  E L L 
Sbjct: 172 LPKNEQTEKKIYTPEQVQRFL--SLLNDEP------LKYRTFFNLMIYSGFRRGEMLGLE 223

Query: 178 PQNIMDDQSTLRIQGKGDKI----------------RIVPLLPSVRKAILEYYDLCPFDL 221
            +++  + + + ++   +                  R +    ++   + EY        
Sbjct: 224 WKDVDFENNIISVRRTSNYTAKKGVYTDTTKTRKSQRTLKFPQAIMDMLREYKAEQDEQA 283

Query: 222 -----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
                       L+    G+P+  G    ++ +      LP     H+ RH FA+ L++ 
Sbjct: 284 LKCGDKWVETDRLYVKWNGEPMQNGTPYFWLGEFCEKHDLPFY-GLHSFRHLFASLLVNQ 342

Query: 277 GGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGD 308
           G D+ ++   LGH  +STT  IY ++  ++   
Sbjct: 343 GVDIVTVSGALGHSTVSTTSNIYCHMLEESRAK 375


>gi|300853246|ref|YP_003778230.1| phage integrase-like protein [Clostridium ljungdahlii DSM 13528]
 gi|300433361|gb|ADK13128.1| phage integrase related protein [Clostridium ljungdahlii DSM 13528]
          Length = 391

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 55/284 (19%), Positives = 107/284 (37%), Gaps = 40/284 (14%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +++L   +I+ + +           +K     +KSF  Y         +  +      KS
Sbjct: 108 LKELKSLDIQRYYNDLFNSGKSTSIIKNLDKLLKSFFNYCIDEGYIVRNYCIG-----KS 162

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWI----DARNSAILYLLYGCGLRISEALSLTP 178
            ++P + +  +     D  +     + ++I    D R  A+  L  G GLR  E L L  
Sbjct: 163 ITIPESNSVNE-NKKDDITVFTVDEQNQFINAVQDHRLKALFLLDLGTGLREGEILGLKW 221

Query: 179 QNIMDDQSTLRIQ-----------------------GKGDKIRIVPLLPSVRKAILEYYD 215
            +I  +  TL ++                          + IR +P   ++   + ++  
Sbjct: 222 SDIDFENCTLSVKRAIKGVTLIEGTKRNYHLIEQTPKTKNSIRTIPFPENLIPILEKHQL 281

Query: 216 LCPFDL-----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
               +             +F    G P++P   +R   ++ +   +P     H+LRH+FA
Sbjct: 282 QQKEEKIKAGPAYTKNDYVFCTELGLPIDPRNLRRSYERVLKNNNIPYK-KFHSLRHTFA 340

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
           T L  N   L+++Q +LGH  ++ T  IYT+V        + +I
Sbjct: 341 TRLFENNVPLKTVQMLLGHSNINITANIYTHVMPPEKFKAIDKI 384


>gi|227539186|ref|ZP_03969235.1| phage integrase family protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227240868|gb|EEI90883.1| phage integrase family protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 406

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 56/294 (19%), Positives = 101/294 (34%), Gaps = 24/294 (8%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRS 87
           +G    TL+ Y         +L     E  T   IR + +  I  +    R+       S
Sbjct: 126 KGFKPNTLKGYNTSVAHLTSYLEKCYGE--TDIAIRHIDHAFITGYEFFLRSDMGCSVVS 183

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             + +  ++  +      +  TE+     +   K         EK+ LT  +   +    
Sbjct: 184 AAKYMKHLRKIINQCLAHRWITETPFAFYKTKAKPR-------EKEFLTSDELDRIAQKE 236

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----MDDQSTLRIQGKGDKIRIVPLL 203
            +    A    I       GL  ++   L   +I          L  + K      +PLL
Sbjct: 237 FSITRLAHVRDIFVFCCYTGLSYADVQKLQKTDIAKGIDGRLWVLTSREKTKTSSNIPLL 296

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           P   + I  Y          +    + RG+    L+      Y++++    G+    T H
Sbjct: 297 PQALEIIERY---------ADYPSCVARGMVLPVLSNQKMNSYLKEIADLCGITKKLTFH 347

Query: 264 TLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             RH+FAT + L+N   + ++  +LGH  + TTQ Y  +     G  M  +  +
Sbjct: 348 MARHTFATTVTLANNVPIETVSKMLGHTNIKTTQHYAKLLDTRIGSDMDALQKR 401


>gi|227524528|ref|ZP_03954577.1| site-specific tyrosine recombinase XerS [Lactobacillus hilgardii
           ATCC 8290]
 gi|227088300|gb|EEI23612.1| site-specific tyrosine recombinase XerS [Lactobacillus hilgardii
           ATCC 8290]
          Length = 374

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 58/351 (16%), Positives = 130/351 (37%), Gaps = 48/351 (13%)

Query: 14  LLKERQNWLQNLEIERG---LSKLTLQSYECDTRQFLIFLAFYTE------EKITIQTIR 64
           L+ E   ++Q+  +E+    LS  TL  Y  +  +F  ++           + I +  + 
Sbjct: 25  LIAEMPTYVQDYYLEKSTVPLSPATLYQYLNEFHRFFTWIMDTGITNAVKIKDIPLSDLE 84

Query: 65  QLSYTEIRAFISKRRTQK----------IGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
           +    ++  + +    +           +  R++ RSL+ + +  +YL +     +    
Sbjct: 85  KFKKQDMELYKAFLLNRGKETAKKPQGTLSHRTVNRSLNALSALFRYLTEESENDDGEPY 144

Query: 115 NMRNLKKSNSL-PRALNEKQALTLVDNVLLHTSHETKWIDA------------------- 154
             RN+ K  +L P +   +     + + L+    +  +++                    
Sbjct: 145 FYRNVMKKIALVPDSETYQTRARNIKDKLMLGDADVNYLNYILNDYSKQIKGKRLLKMHE 204

Query: 155 ----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
               R+ AI  L+ G G+R+SE  +    ++   ++T+ +Q KG K   VP+   V   I
Sbjct: 205 RDRERDVAINALMLGTGIRVSELTNANLNDLNLKKATVSVQRKGGKRDSVPIANWVIPYI 264

Query: 211 LEYYDLCPFDLNLNIQLP-LFRGI---RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
             Y  +     +     P LF        + ++    +  + +  +     +  T H LR
Sbjct: 265 KPYLQVRNQRYHATAATPSLFLTKGANEPRRISTATVELLVAKYSQAFN-HVRITPHKLR 323

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           H+ A+ L     +   + + LG      T +YT++        + E++   
Sbjct: 324 HTLASKLYLETNNEHLVATQLGQTSTKATGLYTHIVDTKQKKALDELHKDH 374


>gi|307706604|ref|ZP_07643411.1| tyrosine recombinase xerD [Streptococcus mitis SK321]
 gi|307618059|gb|EFN97219.1| tyrosine recombinase xerD [Streptococcus mitis SK321]
          Length = 356

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/323 (16%), Positives = 109/323 (33%), Gaps = 45/323 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYT------EEKITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  +  +F  ++             I +  +  +S  ++ +FI   R     
Sbjct: 33  YSFTTLYEYLKEYDRFFSWVLESGISNTDKMSDIPLSVLENMSKKDMESFILYLRERPLL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                 Q +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 93  NANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAA 152

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA--------RNSAILYLLYGCGLRIS 171
           +  N   +   + +    +  +      +              R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLDDETEGFLTYIDQEYPQQLSNRALSSFNKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLF 230
           EA++L  +++      + +  KG K   V +    +  +  Y  +             LF
Sbjct: 213 EAVNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKTDTALF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
             +       ++    ++ + +        +  T H LRH+ AT L         +   L
Sbjct: 273 LTLYRGVPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH     T +YT++ +    + +
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNAL 353


>gi|282877432|ref|ZP_06286255.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281300484|gb|EFA92830.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 407

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 65/289 (22%), Positives = 111/289 (38%), Gaps = 24/289 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           SK +LQ Y    R F  FL + Y ++ I +         +   ++S          +  +
Sbjct: 129 SKDSLQKYSVLRRHFAEFLIYKYGKKDIGLAEFTPSIVQDFELYLST--AAGCAYNTSVK 186

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L  +K+   Y +KR        LN R   +  +    L +++ + + +  +     E  
Sbjct: 187 KLKALKTVTIYAQKRGYLLHDPFLNHRFHLEPVNR-GFLTDEEIMKIANKEIAIQRLEL- 244

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVR 207
               R+  I       GL   +  +LTP NI    D Q  +  + K      V LL   +
Sbjct: 245 ---VRDVFIFSCF--TGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPK 299

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             I +Y      D           G     L       Y++++    G+  + T H  RH
Sbjct: 300 SIIAKYSHKTYRD-----------GKLFPILTNQKTNAYLKEIADICGIKKNLTFHLARH 348

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +FAT  LS G  + S+  +LGH  + TTQ+Y  + +K     M ++ D+
Sbjct: 349 TFATMSLSKGVPMESVSKMLGHTNIKTTQLYARITNKKVEHDMEQLADK 397


>gi|167756396|ref|ZP_02428523.1| hypothetical protein CLORAM_01929 [Clostridium ramosum DSM 1402]
 gi|167703804|gb|EDS18383.1| hypothetical protein CLORAM_01929 [Clostridium ramosum DSM 1402]
          Length = 286

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/295 (17%), Positives = 113/295 (38%), Gaps = 40/295 (13%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N+  +L  E   S  T+  Y  D  +F  +              ++++   ++ +  +  
Sbjct: 13  NYKNHLIDEE-KSLATITKYIRDIEKFYQY-----------ADKKEVTKELVKLYKEELM 60

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL----PRALNEKQAL 135
            +     S+   L+ +  F +Y    +         ++ LK    +     + L++ +  
Sbjct: 61  -KSYKPTSINSMLAALNQFFEYNGWLE-------CKIKELKIQKRVFLEESKELSKDEYK 112

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            LV+          K  + R   +L  +   G+R+SE   +T Q + D  + +  +GK  
Sbjct: 113 RLVNA-------ARKQKNERLYVLLQAICSTGIRVSEHRYITVQALKDGYAQIYNKGK-- 163

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            +R +     +++ +L+Y      +        +F    G+PL+     + ++ L     
Sbjct: 164 -VREIFFSDDLKRILLKYCHKNKIE-----NGAIFVTRSGRPLDRSNIWKAMKDLCDDAK 217

Query: 256 LPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           +       H LRH FA    +   D+  +  +LGH  + TT+IYT  + +    +
Sbjct: 218 VERSKVYPHNLRHLFAVTYYNLKKDIARLADLLGHSSMDTTRIYTMSSGREFKRY 272


>gi|90580686|ref|ZP_01236490.1| Tn554, transposase B [Vibrio angustum S14]
 gi|90438143|gb|EAS63330.1| Tn554, transposase B [Vibrio angustum S14]
          Length = 481

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/323 (17%), Positives = 109/323 (33%), Gaps = 43/323 (13%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +++ + + R  S   LQ Y    + F   +  +        T   ++     +++S  
Sbjct: 55  KKFIKLMALTRTYSV--LQHYATSMKYFSYAIEQFGNSG----TEADINRELAISYMSYL 108

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN---ILNMRNLKKSNSLPRALNEKQAL 135
           +++ +   + K+ +  +K F++   + K     N     +    K   SLPR + E    
Sbjct: 109 KSKGLSADTRKKRILNVKLFIEMAIREKWLNIPNGVIFYSEDIPKMPKSLPRFIPETVMT 168

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT----PQNIMDDQSTLRIQ 191
            L        +H     +     +L +L  CG+RISE  +L       +   D      Q
Sbjct: 169 QL--------NHNIDKFEPTIMRLLLVLQECGMRISEIATLKRDCLISDSDGDYFLKTQQ 220

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG---------- 241
            K +K   +P+     + I+E       D        +F   R                 
Sbjct: 221 SKMNKEHSIPISQETYQVIMEQLRHVD-DCYGRSCEWVFPMERVNRYGRRNSGASKPYKT 279

Query: 242 -VFQRYIRQLRRYLGLP------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
                ++  + +   +          T H  RH+  T +++NG     +Q  LGH   + 
Sbjct: 280 RTIIDHLNNVAKIAHITGDNGQVFHFTTHMFRHTVGTRMINNGVPQHIVQRYLGHESPNM 339

Query: 295 TQIYTNVNSKNGGDWMMEIYDQT 317
           T  Y +V        M   + + 
Sbjct: 340 TSTYAHV----MDSTMKREFAKF 358


>gi|295102865|emb|CBL00410.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 387

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/336 (19%), Positives = 122/336 (36%), Gaps = 40/336 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M G       S    +  + WL      +G+ + TL  Y+    ++L+ +       +  
Sbjct: 52  MSGFYQLSGASMRFSELAELWLA--SFAQGVKESTLTHYQYTLHKYLLPV-------LGD 102

Query: 61  QTIRQLSYTEI-RAFI-----SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
             + +L+ + + R F+     S    + +G  S +     +K   KY  +  +      L
Sbjct: 103 LPVSELNESTLERLFLQILSPSDNSHKPLGTSSAQECFGMLKRICKYAARLHLMPPLE-L 161

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            ++  ++  + PR L+  +    + + LL      K         + L    GLRI E  
Sbjct: 162 CVKLPRQKKAEPRPLSLAE-QAALRSFLLDPPTPRKIG-------VLLQMELGLRIGEVC 213

Query: 175 SLTPQNIMDDQSTLRIQGK-------GDKIRIVPLLPSVRKAILEYY-------DLCPFD 220
            L   +       L IQ             +++   P  RK+  E          L    
Sbjct: 214 GLKWSDFDLKNGILTIQRTVCRIPLGDGHTKLIVQTPKTRKSTREIPLSTGLVAILRKLS 273

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
            ++        G   +P+ P  +++ IR   +   L  +   H LRH+FAT  L  G D+
Sbjct: 274 KDVTPDTWFLSGTESRPVEPRCYRKSIRCYLKRSAL-RTIHPHVLRHTFATTCLQAGCDI 332

Query: 281 RSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYD 315
           +++  +LGH   + T Q Y + +       +  +Y 
Sbjct: 333 KTLSELLGHANANVTLQRYVHSDLNRKQKALQRVYA 368


>gi|269126617|ref|YP_003299987.1| integrase family protein [Thermomonospora curvata DSM 43183]
 gi|268311575|gb|ACY97949.1| integrase family protein [Thermomonospora curvata DSM 43183]
          Length = 353

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 65/329 (19%), Positives = 119/329 (36%), Gaps = 43/329 (13%)

Query: 30  GLSKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKI----- 83
             S  T + Y  D   F          + +    +  +    + AF  +   ++      
Sbjct: 30  QFSPATAEVYCRDMAVFAELAGPGRLLDDLDGADVDAV----LLAFARRPDGRRRRHDPP 85

Query: 84  -------GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN----SLPRALNEK 132
                     S  R    +  F +Y           +  +  + +      +  RAL  +
Sbjct: 86  PAGRALQSAASQARFRRSVSVFFRYAATAGWVRLDPMRAVTVMPRQRGGLRAERRALTAE 145

Query: 133 QALTLV------------DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           QA  LV            +      +   +  + R+  ++ LL   G R+SE      ++
Sbjct: 146 QAGGLVQAARRLAECGPAEARTGRAARRDQRTEIRDGLVVLLLATVGPRVSELTGANVED 205

Query: 181 I--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKP 237
               D +   RI GKG + R VPL  +V + +  Y +     L+  ++   L    RG+ 
Sbjct: 206 FFVNDGRWYWRIFGKGGRTRDVPLPEAVARVLQAYLERGRPLLDRGVEPKALLLSWRGRR 265

Query: 238 LNPGVFQRYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           L  G  Q  I ++   +        T H LRH+ ATHLL+   D+ +++ +LGH  L+T 
Sbjct: 266 LARGDVQAVIDRVLARVEPSRRRAVTPHGLRHTTATHLLAAATDMDAVRRVLGHADLATL 325

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
             Y     ++     +E   + HP +  +
Sbjct: 326 SRY-----RDELPGELEAAMRVHPLLKDQ 349


>gi|284038161|ref|YP_003388091.1| integrase family protein [Spirosoma linguale DSM 74]
 gi|283817454|gb|ADB39292.1| integrase family protein [Spirosoma linguale DSM 74]
          Length = 372

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 60/272 (22%), Positives = 108/272 (39%), Gaps = 23/272 (8%)

Query: 47  LIFLAFYTEEKITIQTIRQLSYTEIRAFI----SKRRTQKIGDRSLKRSLSGIKSFLKYL 102
           L +L  +T  ++ +  +      + RA++    S+R  + +   S     +  K+ LK  
Sbjct: 115 LHYLRDFTGGQLKLSNLTPKKCRDFRAYMMDAKSQRNEEPLAVNSTVSYFNKFKAALKQA 174

Query: 103 KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
               +        + ++K   +    L   +  TLV   L       +       A+   
Sbjct: 175 YIDGLINVDLNAKIESIKPEETRREYLTLAELQTLVQTDLPALPILKQA------ALFSA 228

Query: 163 LYGCGLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           L   GLR S+  +LT + I  D  S   I     K R V +LP      +    +     
Sbjct: 229 L--TGLRYSDIEALTWEQIRHDASSGYFIHFTQQKTRGVEVLP------ISELAVALLGT 280

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
            L    P+  G+    +    + + ++Q  +  G+    T H+ RH++AT  LS G D+ 
Sbjct: 281 RLGDSQPVLPGL----IYSAHWNKILKQWVKDAGITKPITFHSFRHTYATLQLSLGTDIY 336

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           ++  +LGH  L TTQIY  +  ++  D   +I
Sbjct: 337 TVSKMLGHRELKTTQIYAKIVDQSKRDAADKI 368


>gi|295840963|dbj|BAJ06849.1| integron integrase intI [uncultured bacterium]
          Length = 418

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 63/283 (22%), Positives = 107/283 (37%), Gaps = 59/283 (20%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSL 88
           G S  T ++Y     +FL F                L  + I  F+      K +   + 
Sbjct: 157 GYSIRTEKAYSSWLEKFLNFHRNTQT--------SSLDESHIARFLEHLAINKQVSSSTQ 208

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            ++L+ I  F +++  ++I    NI  +R+ KK   LP  L++++   +++         
Sbjct: 209 SQALNAIIYFYRHVLGKQIAE--NIEFIRS-KKPKRLPVVLSKEEVALVME--------- 256

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV- 206
            K ++   + +  LLYGCG+R+ E + L   +I      + I+  KG K R+ P+   + 
Sbjct: 257 -KMVNPTFNLMANLLYGCGMRLMECVRLRVLDIDFTYRQILIRQAKGKKDRVAPMPDKLF 315

Query: 207 -----------------------------------RKAILEYYDLCPFDLNLNIQLPLFR 231
                                              R A  E      F        P   
Sbjct: 316 TPLKEQVKQVETMHAEDLKQGYGSVYLPGTLSRKYRNAERELRWQYVFPSVKLSVDPRSG 375

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
            +R   +N    QR+I++     G+    T HTLRH+FATHLL
Sbjct: 376 EVRRHHINERGLQRHIKRAADMTGINKRVTCHTLRHTFATHLL 418


>gi|310778729|ref|YP_003967062.1| integrase family protein [Ilyobacter polytropus DSM 2926]
 gi|309748052|gb|ADO82714.1| integrase family protein [Ilyobacter polytropus DSM 2926]
          Length = 324

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 110/283 (38%), Gaps = 19/283 (6%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR---QLSYTEIRAFISKR-RTQKIGDRS 87
           S+ TL+ Y     +FL F+     E    + +R   ++   +I  ++      +++ + S
Sbjct: 32  SEKTLKDYMFYLNKFLNFVYEGNGEFHKDEIVRLMTEVEKEDIEDYVYHLIEERELKNTS 91

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           + + +S +KS     +  K   E+ +  +  LK S       N  +        +L    
Sbjct: 92  VNKIISSLKSLYN--ELEKHGHENPLKFVPLLKVSRH--NFENVLKVSFSEIKEILKKHE 147

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLP 204
                  RN  I++ L+  G+R  E L+L   +I+  +    I+    K  + +   L P
Sbjct: 148 VLDDKSYRNRIIVHTLFYTGMRSQELLNLKYSDIIKREKEYVIKLEKTKSGREQYKALHP 207

Query: 205 SVRKAILEYYDLCPFDLNLNI----QLPLFRG--IRGKPLNPGVFQRYIRQLRRYLGLPL 258
              + I  Y        +L+     +  +F    +    L+       I+ + +   +  
Sbjct: 208 ECMEKIFSYKKYIKKLYSLSDSQLEEQYIFPSDFLNNTRLSYSSLYTIIQNMGKL--IEK 265

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             + H +RH+ AT L   G D+  I+  LGH     T++Y N 
Sbjct: 266 DISPHNIRHAVATELSLQGADIMEIRDFLGHADTKVTEVYINA 308


>gi|124006309|ref|ZP_01691144.1| phage integrase family protein [Microscilla marina ATCC 23134]
 gi|123988233|gb|EAY27891.1| phage integrase family protein [Microscilla marina ATCC 23134]
          Length = 400

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/286 (20%), Positives = 106/286 (37%), Gaps = 25/286 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKR 90
           SK T   Y     Q+  FL             + +    + AF    +  K +   ++  
Sbjct: 134 SKNT---YINGLNQYFGFLGD--------NNWQMIDARNVAAFRDYLKDNKELSAFTINS 182

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL--LHTSHE 148
            LS IK  +K+  K     +  I  +  +K+  +L     +     L  +VL  L    +
Sbjct: 183 YLSAIKELVKFCLKNYQMADGQIKALNEVKEVKTLKTNTKKYYKNALPPDVLKRLIAGED 242

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
           T+W          ++  CGLR+ E  +L   ++  D   L++ GKG   +    L    K
Sbjct: 243 TRWAAYW-----GIMGYCGLRVKELQALKWADVDFDLDILKVLGKGQNTKEEVKLFGKAK 297

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-STTAHTLRH 267
            +L        +    +Q  L +       +      + +   + +G+     + H+LRH
Sbjct: 298 VLLR---AFLGEAKETVQGSLPKNFEICSYSYPTLYNHFKASLKAIGVDETKYSLHSLRH 354

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +    +L +G  L  +Q  L H    TT +Y  VN K    ++  +
Sbjct: 355 TCGQQMLESGNPLEFVQRQLRHASTDTTAVY--VNKKLDEMFLKNV 398


>gi|327489701|gb|EGF21492.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK1058]
          Length = 356

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 109/326 (33%), Gaps = 45/326 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTE------EKITIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  +  +F  ++            +I +  +  ++  ++ AFI   R +   
Sbjct: 33  YSFTTLYEYLKEYDRFFNWVLESGITDASYIAEIPLSVLENMTKKDMEAFILYLRERPLL 92

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                   +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 93  NANTTQNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATKKKKETLAA 152

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA--------RNSAILYLLYGCGLRIS 171
           +  N   +     +    +  +      +              R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETEGFLQYIDREYPKKLSNRALSSFNKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           EA++L  ++I      + +  KG K   V +       + EY  +             F 
Sbjct: 213 EAVNLDLKDINLKMMVIEVTRKGGKRDSVNVAAFAMSYLEEYLSIRSKRYKAEKTDTAFF 272

Query: 232 ----GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +        +  T H LRH+ AT L         +   L
Sbjct: 273 LTEYRGNPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH     T +YT++ +    + + ++
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNALDKL 356


>gi|330966178|gb|EGH66438.1| integrase/recombinase XerC [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 336

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/320 (16%), Positives = 116/320 (36%), Gaps = 44/320 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q WL  L    G +  TL +Y      +L+       E      +  +++ ++  +I +
Sbjct: 17  VQEWLA-LLGNLGRAPATLDAYGRGLAHYLLHCEASGLE------VESITFEQVTLYIRR 69

Query: 78  R---RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN---------------- 118
               +   + + +L + L+ I+ +  ++  +    ++ +   ++                
Sbjct: 70  LLPGQENAVANSTLHQRLTAIRLWYDHMVFQGRCVQNPVPRGQHGRLCHIPGHSCFVRGL 129

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           + +   LP    ++Q    +      +         R+  +L L Y   LR +E + L  
Sbjct: 130 VPRLIKLPDIPTDEQWRYFLSIAARSS--------IRDRLMLSLAYRGALRRAELVGLKI 181

Query: 179 QNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG--- 232
           +++      + ++    KG + R+V   P +   +  +       L    +  LFR    
Sbjct: 182 EDLDLAHRLISVRAETTKGRRSRVVCYSPDIAPILGTHLHA--LRLAGWSKGALFRSESD 239

Query: 233 -IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
             RG  L+   + + + +      L    + HT RH   THL   G  L  + +  GH  
Sbjct: 240 RNRGSALSRWTWSKTVERWATDSNLSC-LSTHTFRHLRLTHLARAGWKLHELTAYAGHRD 298

Query: 292 LSTTQIYTNVNSKNGGDWMM 311
             TT IY +++  +    M 
Sbjct: 299 PKTTLIYVHLSGADLTAKMA 318


>gi|323351578|ref|ZP_08087232.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis VMC66]
 gi|322122064|gb|EFX93790.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis VMC66]
          Length = 357

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 111/326 (34%), Gaps = 45/326 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  +  +F  ++            +I +  +  ++  ++ AFI   R +   
Sbjct: 34  YSFTTLYEYLKEYDRFFNWVLESGITDASHIAEIPLSVLENMTKKDMEAFILYLRERPLL 93

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                   +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 94  NANTTQNGVSQTTISRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATKKKKETLAA 153

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA--------RNSAILYLLYGCGLRIS 171
           +  N   +     +    +  +      +              R+ AI+ LL   G+R+S
Sbjct: 154 RAENIKQKLFLGDETEEFLQYIDTEYPKKLSNRALSSFNKNKERDLAIIALLLASGVRLS 213

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLF 230
           EA++L  ++I      + +  KG K   V +    +  + EY ++              F
Sbjct: 214 EAVNLDLKDINLKMMVIEVTRKGGKRDSVNVAAFAKPYLEEYLNIRSKRYKAEKTDTAFF 273

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +        +  T H LRH+ AT L         +   L
Sbjct: 274 LTEYRGTPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQL 331

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH     T +YT++ +    + + ++
Sbjct: 332 GHASTQVTDLYTHIVNDEQKNALDKL 357


>gi|296876504|ref|ZP_06900555.1| phage integrase family integrase/recombinase [Streptococcus
           parasanguinis ATCC 15912]
 gi|296432497|gb|EFH18293.1| phage integrase family integrase/recombinase [Streptococcus
           parasanguinis ATCC 15912]
          Length = 356

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/323 (16%), Positives = 111/323 (34%), Gaps = 45/323 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  +  +F  ++         T  +I +  +  ++  ++ +FI   R +   
Sbjct: 33  YSFTTLYEYLKEYDRFFTWVLESGISNADTMAEIPLDVLEHMTKKDMESFILYLRERPLL 92

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                   +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 93  NANTTKNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATKKKKETLAA 152

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA--------RNSAILYLLYGCGLRIS 171
           +  N   +     +    ++ +                     R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETEGFLNYIDQEYPQTLSNRALSSFNKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLF 230
           EA++L  +++      + +  KG K   V +    +  + +Y  +             LF
Sbjct: 213 EAVNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLEQYLAIRDKRYKTEKTDTALF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
             +       ++    ++ + +        +  T H LRH+ AT L         +   L
Sbjct: 273 LTLYRGVPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH     T +YT++ +    + +
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNAL 353


>gi|296165373|ref|ZP_06847914.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295899264|gb|EFG78729.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 373

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/324 (16%), Positives = 108/324 (33%), Gaps = 48/324 (14%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRS 87
           R  ++ T++       +F+ F   Y  E          +   +  + +           +
Sbjct: 47  RLCAENTVKVRASCVGEFIEFSGAYPWE---------WTARMMDEWSAHLVGSLSRAKST 97

Query: 88  LKRSLSGIKSFLKYL---------KKRKITTESNILNMRNLKKSNSL--------PRALN 130
           +++    ++ F  ++         +      +           S  L         R   
Sbjct: 98  IRQKQGAVRLFCSFITSPYYDWPTQCELWFGDHPTQICHEWNTSAHLVDYEGDPGRRPFT 157

Query: 131 EKQALTLVDNVLLH------TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
            K+    +D           +  +      R++ +  ++YG GLRI+E   L   ++  +
Sbjct: 158 RKELQDFLDCADAQVEKARRSRRKGTLAAYRDTTMFKVMYGWGLRINELCRLDLADMYRN 217

Query: 185 Q--------STLRIQGKG-------DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
                      L ++           +  +  L+P   +A+L+Y +          +  L
Sbjct: 218 PHAPELGPCGFLHVRYGKASRGSPPKRRTVPTLMPWAAEALLDYVNNIRPLYEPGQKQAL 277

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           +   R   +           +R  +GL    T H  RHSF +H+  +G D R +Q I GH
Sbjct: 278 WLTERRSQVKVRTLTGTFDDIRDEVGLDRKLTPHCFRHSFISHMTEDGVDPRFLQEISGH 337

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEI 313
              STT IYT+V  +     + + 
Sbjct: 338 RFASTTGIYTHVTGEFMNKMLTDA 361


>gi|119490343|ref|ZP_01622821.1| Phage integrase [Lyngbya sp. PCC 8106]
 gi|119454002|gb|EAW35156.1| Phage integrase [Lyngbya sp. PCC 8106]
          Length = 312

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/289 (18%), Positives = 118/289 (40%), Gaps = 18/289 (6%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T++         L          +    +R      I+A +  R        + ++ 
Sbjct: 33  SRRTMRGALNTIAAILT-NGECDANTLNWAALRYQHTAAIQAALLNR----YSTSTAQKM 87

Query: 92  LSGIKSFLKYLKKRKITTE---SNILNMRNLKKSNSLP-RALNEKQALTLVDNVLLHTSH 147
           ++ ++  L+  +K ++      S  +++ ++K   +L  RAL++ +   L++      + 
Sbjct: 88  MAALRRVLEEARKLQLMDAESYSTAVDLLSIKVYVNLRGRALSQSEISALINVCQADPTS 147

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
           +      R+ A++ +L G GLR +E + L  ++       L+I Q KG K R V L  + 
Sbjct: 148 Q----GVRDRALIAILRGSGLRRAEVVKLRVKDFNPVTGALKILQSKGRKDRTVYLPENA 203

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHT 264
              +  + D+        +  P+ +G + +   + P      +++     G+  S + H 
Sbjct: 204 IAWVENWLDVRGRSPGP-LLCPIRKGGKIERRYMTPQAVFFIMKKRALEAGVE-SFSPHD 261

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            R +F + LL  G D+ ++Q + GH    TT  Y     +     + ++
Sbjct: 262 FRRTFCSDLLDAGVDIVTVQKLAGHANPMTTANYDRRGEETKRKAVQKL 310


>gi|260911952|ref|ZP_05918516.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon
           472 str. F0295]
 gi|260633899|gb|EEX52025.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon
           472 str. F0295]
          Length = 386

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/321 (18%), Positives = 119/321 (37%), Gaps = 36/321 (11%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++ + +  +R  ++ +  ++          L +   E+IT   I        + ++    
Sbjct: 90  DYYRAMCAKRRGNEESRGNWGNWYSCLRHMLKYEPNERITFAQITPEWVQGFKDYLEHDA 149

Query: 80  -------TQKIGDRSLKR-----SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
                   ++I D+ L R       + +++ L    + ++   + +  + + K  + +  
Sbjct: 150 VAWGNDYRKRIKDKPLARNSKLSYFNKLRACLNQAFEERVIPYNPMRGIESFKPEDGMRM 209

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L  ++   L          + ++ + + + +   L   GLR S+ + +T   +      
Sbjct: 210 YLTLEEVRRL-------AQTDCEYPNIKRAFLFSCL--TGLRRSDIIRMTWSEVFQQGEY 260

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
            RI  K  K      L    +A                +  +F  I     +P      I
Sbjct: 261 TRIIFKQKKTNGQEYLDITGQA------AELMGKRGRPEEHVFDEIH----SPTCTNTAI 310

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           R+     G+    T H  RH+FA  +L  G D+ ++  +LGH  LSTTQIY  V  KN  
Sbjct: 311 REWVLRAGINKKITFHCARHTFAVMMLDLGTDIYTVSKLLGHRELSTTQIYAKVLDKNKQ 370

Query: 308 DWMMEIYDQTHPSITQKDKKN 328
             +  I     P+I + + K+
Sbjct: 371 KAVSSI-----PNILENENKS 386


>gi|307564607|ref|ZP_07627144.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307346692|gb|EFN91992.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 417

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 108/278 (38%), Gaps = 17/278 (6%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
                +FL     Y  + I +Q        ++  + +K +  K+        L+ + S L
Sbjct: 142 RKHLSEFLRC--RYHVDDIPVQKADTALIKDLEEYFAKEKGFKLNTS--AGYLTMLASLL 197

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           K L KR I      +   +++     PR +  ++   +       T +E +  +  +  +
Sbjct: 198 KDLHKRHIIDPYPFIG-HSIRWDVGTPRYITREEVNKI----AALTDNELQDYEQVSRDM 252

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDL 216
                  GL  ++   LT ++I+ +     I+    K   +  +PLLP     I  Y  +
Sbjct: 253 FLFSCYTGLSYTDVYHLTAEHIIHESDMDWIRKPRVKTGNVCHIPLLPEASAIIERYRGI 312

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LS 275
                           I G          +++++ R  G+  + T H  RH+FA+ + LS
Sbjct: 313 HTRAFRHEPPKGYLLPIPGC----DTLNIHLKKIARLCGIQKTLTYHMARHTFASQMTLS 368

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G  + S+  +LGH ++ TTQ+Y   + +     + +I
Sbjct: 369 EGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKI 406


>gi|295840983|dbj|BAJ06864.1| integron integrase intI [uncultured bacterium]
          Length = 423

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 59/284 (20%), Positives = 107/284 (37%), Gaps = 59/284 (20%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           R  S  T +SY+    +FL F A        +  +   +   I  F+     ++ +   +
Sbjct: 161 RHYSFQTEKSYKAWLVRFLKFHA--------VDNLADFTELHITRFLEHLVISRHVSSST 212

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++L+ +  F K++  R+ + +   +     KK   LP  L++ +  TL  ++      
Sbjct: 213 QSQALNALVYFYKHVLDREPSED---IQFVRSKKPKRLPVVLSQDEISTLFAHIR----- 264

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSV 206
                +     +  LLYGCG+R+ E + +   ++  D   L I+G KG K R+ P+   +
Sbjct: 265 -----NPTFLLMANLLYGCGMRLMECVRIRILDVDFDYQQLLIRGAKGKKDRVAPIPAKL 319

Query: 207 RK----------------------------AILEYYDLCPFDLNLNIQLPLFR------- 231
                                         A+   Y     +       P  R       
Sbjct: 320 VTTLKSHLTGVRNMHDEDLAQGYGSVYLPGALARKYPNAEKEFRWQFVFPSVRVSADPRS 379

Query: 232 -GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
             IR   ++    Q ++++     G+    + HTLRHSFATHLL
Sbjct: 380 GEIRRHHIHQTGLQHHLKRAADSSGINKKVSCHTLRHSFATHLL 423


>gi|161507605|ref|YP_001577559.1| site-specific tyrosine recombinase XerS [Lactobacillus helveticus
           DPC 4571]
 gi|160348594|gb|ABX27268.1| Phage integrase-recombinase [Lactobacillus helveticus DPC 4571]
          Length = 344

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 57/320 (17%), Positives = 111/320 (34%), Gaps = 41/320 (12%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAF------YTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
             S  T   Y  + R+F  +L           + I   T+  L   +I  +I      K 
Sbjct: 13  NHSLTTTYQYLTEIRRFFDWLRQEGISSAQDNQHILPDTLANLRRNDIMLYIDNLGHTKN 72

Query: 84  ------GDRSLKRSLSGIKSFLKY-------LKKRKITTESNILNMRNLKKSNSLPRALN 130
                    ++ RS++ ++S  K+          +     + +L + +L  + +L    +
Sbjct: 73  KQGHLNSPTTINRSINALRSLFKFLTITADNNNGKSYFERNVMLKIESLNDTKTLNYRAH 132

Query: 131 EKQ----------------ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
             +                A    +          K    R+ AI+ L+ G G+R+SE  
Sbjct: 133 VLESHMYTGNLKFEFLKFIAHDYENKCNKQAKPGFKKNKERDMAIIALILGTGIRVSECA 192

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
            +  Q++    + L +  KG +   VP+       I +Y  +       + +   F   R
Sbjct: 193 GVDMQDLNIKDAILDVTRKGGQKDSVPIAEWTLDYIKKYKKIRAERYMADPKQTAFFLTR 252

Query: 235 GK----PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
                  +     ++ + +     G P   T H LRH+ A+ L +   D   +   LG  
Sbjct: 253 WHNQTKRMTTNAIEKMVNKYSASFGHP--LTPHKLRHTLASELYAVTKDQVLVAQQLGQK 310

Query: 291 RLSTTQIYTNVNSKNGGDWM 310
             + T +YT+V+ K     +
Sbjct: 311 GTTATDLYTHVDQKKQRAAL 330


>gi|317483230|ref|ZP_07942225.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316915299|gb|EFV36726.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 387

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 61/284 (21%), Positives = 109/284 (38%), Gaps = 34/284 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
              Y EE+   + I  ++  E++A+IS       G  S++R    +    +   + K+  
Sbjct: 89  WRLYCEERWADRRIGTITRAEVQAWISDIIAS-AGAPSVRRPYQTMLGICRMAVRDKLIL 147

Query: 110 ESNILNMRNLKKSNSLPR--ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++   N+   K      R   L   + L   D          K + A   A++  L  CG
Sbjct: 148 DNPCENVELPKLPRRKSRRVYLTISRLLAFADEC-----SRGKHLGAERRALVLTLGFCG 202

Query: 168 LRISEALSLTPQNIMDDQSTLRIQG--------------KGDKIRIVPLLPSVRKAILEY 213
           LR  EA +L  +++   +  L + G              K  + R VP+   V +A+   
Sbjct: 203 LRWGEAAALKARDLDFGRGVLHVGGNLVYVGARWVEGTPKNSEERDVPMPLIVMEALKPM 262

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR---YIRQLRRYLGLPLS--TTAHTLRHS 268
                 D        +FR +RG P+      +   +       LG P     T H LRH+
Sbjct: 263 CGEREPDER------VFRDLRGGPIMKQSAAKTTGWWYHALVCLGWPKEEWPTPHDLRHT 316

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMM 311
            A+  +  G +++++Q +LGH   S T  +Y ++   +  D   
Sbjct: 317 AASLAVHAGANVKALQRMLGHKNASMTLDVYADLFDSDLMDVAR 360


>gi|296163746|ref|ZP_06846454.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886007|gb|EFG65917.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 410

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/296 (21%), Positives = 109/296 (36%), Gaps = 14/296 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L  +RGL+K +L  Y    R FL   +      +            IR  +   R
Sbjct: 116 RYLDYLRQDRGLAKNSLLVYGPFIRDFLDSHSAGDGSLL----PDAFDAVTIRNHLLA-R 170

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLPRALNEKQALTL 137
           ++       +     ++SF  +L  R  T      ++ +++K    ++P  +  +Q   L
Sbjct: 171 SKGRSAEYTRLMAVALRSFCHFLFLRGDTARDLYESVPSVRKWRQSTVPTFVTPEQQEAL 230

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +      ++  +  I  R+ AIL LL   GLR  E +++   +I      L + GKG  +
Sbjct: 231 I-----ASADRSTPIGRRDYAILLLLARLGLRAGEIVAIELDDIHWRSGELVVHGKGQMV 285

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL- 256
             VPL   V +AI  Y                    R     P    + + Q     G  
Sbjct: 286 EHVPLPSEVGEAIATYLREGRGASASRRVFLRRLAPRVGLAGPAAIGKIVCQAFARAGFR 345

Query: 257 -PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
                 AH  RH  AT ++ +G  +  I  +L H    +T IY  V  ++  +   
Sbjct: 346 PACRGAAHLFRHGLATTMIRHGASMAEIAEVLRHRSTDSTAIYAKVAFEDLREVAR 401


>gi|55709836|gb|AAV58821.1| integrase [Clostridium sp. CCRI-9842]
          Length = 397

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/294 (16%), Positives = 108/294 (36%), Gaps = 34/294 (11%)

Query: 48  IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI 107
             +    ++++    I  +  ++ + +  + + + +  +++      +K+          
Sbjct: 108 RLMRILEQDRLGSCPIDSVKLSDAKEWALRMKEKGLSYKTINNDKRSLKAAFYTAILDDC 167

Query: 108 TTESNI-LNMRNLKKSNSLPRA-LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
             ++     + ++   ++ P+  L   Q     +   L      K       AI+ LL G
Sbjct: 168 IRKNPFDFQLSDVLDDDTEPKVPLTPAQ-----EESFLSFIQGDKVYQKHYDAIVILL-G 221

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQG----------------KGDKIRIVPLLPSVRKA 209
            GLRISE   LT +++  +   + +                      +R +P+   V +A
Sbjct: 222 TGLRISELCGLTDKDLDFENRVIIVSHQLLRNTGVGYYIDEPKTQSGVRKIPMNEEVYQA 281

Query: 210 ILEYYDLCPFDLNL---NIQLPLFRGIRGKPLNP----GVFQRYIRQLRR--YLGLPLST 260
                                 LF    G P+      G+F R +++  +     LP +T
Sbjct: 282 FQRVIKNRKGAKPFIIDGYANFLFLKQNGYPMTAVDYGGMFGRLVKKYNKSHEEALPKTT 341

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           T H +RH+F T L + G + +++Q I+GH  ++ T   Y +    +    M  +
Sbjct: 342 TPHAMRHTFCTRLANAGMNPKALQYIMGHSNITMTLNYYAHATFDSARAEMERL 395


>gi|171317907|ref|ZP_02907083.1| integrase family protein [Burkholderia ambifaria MEX-5]
 gi|171096914|gb|EDT41786.1| integrase family protein [Burkholderia ambifaria MEX-5]
          Length = 283

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/290 (17%), Positives = 117/290 (40%), Gaps = 22/290 (7%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           L+  T +S + D         ++++  + +     L   ++R +I+ R+   + + +++R
Sbjct: 11  LASKTNRSRQRDLYALKRLRPYFSDRDLCV-----LKRADVRRYIAVRQADGVQESTIQR 65

Query: 91  SLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            L    + + +++      +  + ++ +     +  + R ++ + A  LV    +  S  
Sbjct: 66  ELRVFSAAINFVRLEYDRPDLPNPVIRLAMSSGAARV-RWISRQDADALV----ICASRF 120

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPS 205
            +     N   + L    G R +E L L    +  D++ L ++    K  K R+VPL   
Sbjct: 121 ARRPHLPN--FIRLALHTGCRKNELLKLEWSRVDFDRAVLSLEPSDTKNGKRRVVPLNDE 178

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              A+          + +     +F    G  +     Q+  R      G+      H L
Sbjct: 179 AMAALRH--QRDWVRVTVPRSPWVFAVASGDRMT--TIQKGFRAACLRAGID-DFRVHDL 233

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           RH+FA+ L+  G  L  ++ +LGH  ++ T+ Y ++    G + +  ++ 
Sbjct: 234 RHTFASWLVMAGVSLYVVKDLLGHSSITVTERYAHLAPHMGREAVRTLHA 283


>gi|330988945|gb|EGH87048.1| integrase/recombinase XerC [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 336

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/320 (16%), Positives = 116/320 (36%), Gaps = 44/320 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q WL  L    G +  TL +Y      +L+       E      +  +++ ++  +I +
Sbjct: 17  VQEWLA-LLGNLGRAPATLDAYGRGLAHYLLHCEASGLE------VESITFEQVTLYIRR 69

Query: 78  R---RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN---------------- 118
               +   + + +L + L+ I+ +  ++  +    ++ +   ++                
Sbjct: 70  LLPGQENAVANSTLHQRLTAIRLWYDHMVFQGRCVQNPVPRGQHGRLCHIPGHSGFVRGL 129

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           + +   LP    ++Q    +      +         R+  +L L Y   LR +E + L  
Sbjct: 130 VPRLIKLPYIPTDEQWRYFLSIAARSS--------IRDRLMLSLAYCGALRRAELVGLKI 181

Query: 179 QNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG--- 232
           +++      + ++    KG + R+V   P +   +  +       L    +  LFR    
Sbjct: 182 EDLDLAHRLISVRAETTKGRRSRVVCYSPDIAPILGTHLHA--LRLAGWSKGALFRSESD 239

Query: 233 -IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
             RG  L+   + + + +      L    + HT RH   THL   G  L  + +  GH  
Sbjct: 240 RNRGSALSRWTWSKTVERWATDSNLSC-LSTHTFRHLRLTHLARAGWKLHELTAYAGHRD 298

Query: 292 LSTTQIYTNVNSKNGGDWMM 311
             TT IY +++  +    M 
Sbjct: 299 PKTTLIYVHLSGADLTAKMA 318


>gi|303250872|ref|ZP_07337065.1| integrase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307246987|ref|ZP_07529049.1| Integrase [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307253724|ref|ZP_07535588.1| Integrase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307255956|ref|ZP_07537755.1| Integrase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307259763|ref|ZP_07541483.1| Integrase [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|302650287|gb|EFL80450.1| integrase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306852107|gb|EFM84350.1| Integrase [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306858800|gb|EFM90849.1| Integrase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306861086|gb|EFM93081.1| Integrase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306866153|gb|EFM98021.1| Integrase [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
          Length = 267

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/297 (17%), Positives = 113/297 (38%), Gaps = 35/297 (11%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++ + L  +  L+K T+ +Y    +QF                   ++ + ++ +     
Sbjct: 4   SFQKYLSNQ-NLAKNTVSAYLFAVKQFYKLFP-------------DITKSHLKEYKVFLI 49

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +    +++   L  I  +L++LKK K       L    +++   L   ++E        
Sbjct: 50  -EHYKPQTVNLRLRAINCYLEFLKKEKWK-----LTFVKVQQKPFLENVISEADYHYF-- 101

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              L   +E  W       ++  +   G R+SE + +  ++I      L +  KG K+R 
Sbjct: 102 KQRLKEDNELYW-----YFVIRFMAATGARVSELIQIKVEHINI--GYLDLYSKGGKLRR 154

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PL 258
           + +  ++++   E+      D    +   +F    G+ +        ++ L +   L P 
Sbjct: 155 IYIPLALQQESREWL-----DKTNKLSGFIFLNKYGERITTRGIASQLKILAKRYKLEPK 209

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
               H+ RH FA   L    D+  +  ++GH  + TT+IY    +      + +I D
Sbjct: 210 VVYPHSFRHRFAKSFLERFNDIAFLADLMGHESIETTRIYLRKTATEQQAIINKIID 266


>gi|307565509|ref|ZP_07627991.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345778|gb|EFN91133.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 407

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 65/289 (22%), Positives = 111/289 (38%), Gaps = 24/289 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           SK +LQ Y    R F  FL + Y ++ I +         +   ++S          +  +
Sbjct: 129 SKDSLQKYSVLRRHFAEFLIYKYGKKDIGLAEFTPSVVQDFELYLST--VAGCAYNTSVK 186

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L  +K+   Y +KR        LN R   +  +    L +++ + + +  +     E  
Sbjct: 187 KLKALKTVTIYAQKRGYLLHDPFLNHRFHLEPVNR-GFLTDEEIMKIANKEIAIQRLEL- 244

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVR 207
               R+  I       GL   +  +LTP NI    D Q  +  + K      V LL   +
Sbjct: 245 ---VRDVFIFSCF--TGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPK 299

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             I +Y      D           G     L       Y++++    G+  + T H  RH
Sbjct: 300 NIIAKYSHKTYRD-----------GKLFPILTNQKTNAYLKEIADICGIKKNLTFHLARH 348

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +FAT  LS G  + S+  +LGH  + TTQ+Y  + +K     M ++ D+
Sbjct: 349 TFATMSLSKGVPMESVSKMLGHTNIKTTQLYARITNKKVEHDMEQLADK 397


>gi|255655014|ref|ZP_05400423.1| integrase [Clostridium difficile QCD-23m63]
          Length = 397

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/294 (18%), Positives = 114/294 (38%), Gaps = 38/294 (12%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +    E+K+    I  +  ++ + +  + + +  G +++      +K+      +     
Sbjct: 110 MRILQEDKLGACRIENVKLSDAKEWALRMKEKGYGFKTINNHKRSLKAAFYTAIQDDCIR 169

Query: 110 ESNI-LNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     +  + + ++ P+  L+  Q    +  V     H+  +    +  I+  L G G
Sbjct: 170 KNPFDFQLNTVLEDDTEPKEPLSPTQEAAFLSFV----QHDKVYQKYYDEIII--LLGTG 223

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAIL 211
           LRISE   LT  +I  D+  + +                       R++P+   V +A  
Sbjct: 224 LRISELCGLTEADIDLDKQLINVDHQLLKIADVGYYVETPKTKSGNRVIPMSEKVLEAFQ 283

Query: 212 EYYDLCPFDLNL---NIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGLPLST 260
              +   +   +        LF    G P        +  G+ ++Y +   + + LP   
Sbjct: 284 RVLNKRKYAQTVILEGYTKFLFLNRNGLPKVAVNYESMFRGLVRKYNKT--QKVALPKVM 341

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           T HTLRH+F T L + G + +++Q I+GH  ++ T   Y +  S+     M  +
Sbjct: 342 TPHTLRHTFCTTLANAGMNPKALQYIMGHSNINMTLNYYAHTTSETSITEMKRL 395


>gi|206889998|ref|YP_002248163.1| site specific recombinase [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206741936|gb|ACI20993.1| site specific recombinase [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 345

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 94/254 (37%), Gaps = 25/254 (9%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS----GIKSFLKYLKKRKITTESNILNMR 117
            I Q++  +I         +     S+ R ++     ++   ++    + T +  +  ++
Sbjct: 93  PINQITTRDIELLQGDLL-KGRTPASVNRIIATIKHSLRKAYEWELTEEETLK-RVQRVK 150

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
            LK      R L+ ++   L++    H              I+      G+R  E LSLT
Sbjct: 151 PLKGEVQRLRFLSLEECHKLIEVAEPHLKP-----------IIITALNTGMRKGEILSLT 199

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-K 236
              I      + ++   +  R    +    K +                  +F      K
Sbjct: 200 WSQIDLKHGFIHLEKTKNGERRDIPMNDTLKILFRDLIKNRRL----DSDYVFLNPETGK 255

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L     +R  R   +  G+      H LRH+FA+HL+ NG DL+++Q +LGH  +  T 
Sbjct: 256 RLTD--IKRSFRTACKRAGIT-DFRFHDLRHTFASHLIMNGVDLKTVQELLGHKTIKMTL 312

Query: 297 IYTNVNSKNGGDWM 310
            Y++++  +    +
Sbjct: 313 KYSHLSKAHKEKAV 326


>gi|237712395|ref|ZP_04542876.1| integrase [Bacteroides sp. 9_1_42FAA]
 gi|237726584|ref|ZP_04557065.1| integrase [Bacteroides sp. D4]
 gi|229435110|gb|EEO45187.1| integrase [Bacteroides dorei 5_1_36/D4]
 gi|229453716|gb|EEO59437.1| integrase [Bacteroides sp. 9_1_42FAA]
          Length = 267

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 107/287 (37%), Gaps = 34/287 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            L+K T+ SY    + FL                 +++   + A+      +    +++ 
Sbjct: 13  NLAKNTVTSYVWTVQYFLNHYG-------------EVNKKNLLAYKGYL-VENFKPQTVN 58

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             L GI  +L++ K+ K+        ++ +K        L  +  ++  D   L T  + 
Sbjct: 59  LRLQGINKYLEFTKQEKL-------KVKFVKVQQK--NFL--ENVISNADYKFLKTQLKA 107

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              D     I++ +   G R+SE L +  +++      L +  KG KIR + +  ++R  
Sbjct: 108 DGYDEW-YFIVWFMAATGARVSELLHIKAEHVQI--GHLDLYSKGGKIRRLYIPKNLRTE 164

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHS 268
             ++               +F    G+ +        ++      G+       H+ RH 
Sbjct: 165 AAKWLKEIGL-----TSGYIFLNRFGQRITTRGIASQLKHFAEKYGMNKEVVYPHSFRHR 219

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           FA + L    DL  +  ++GH  + TT+IY    +      + ++ +
Sbjct: 220 FAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDKVVN 266


>gi|219563220|ref|YP_002455812.1| integrase [Lactobacillus phage Lv-1]
 gi|215536987|gb|ACJ68924.1| integrase [Lactobacillus phage Lv-1]
          Length = 368

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/297 (17%), Positives = 116/297 (39%), Gaps = 21/297 (7%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + +       +++++   +E  +   TL +Y+   ++         E       I+Q++ 
Sbjct: 66  LANPPFFDYAEDFIKY-NVENRVRPATLTAYKVALKR--------IESNFPNIPIKQITR 116

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS--NSLP 126
           +  ++ +++  + K    ++ ++       +K      +        ++  +K+      
Sbjct: 117 SMFQSLLNQL-SIKYSKSTVNQTAVVFSQIMKLALADGLVVRDVTSFVQIPEKAQDKRKI 175

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             L+     TLV ++  + +             +      G R+SE  +LT  ++     
Sbjct: 176 DYLSLADVKTLVSHIKDNLNTTRVAPY-----FILTAIETGARLSELAALTWDDLTPTSI 230

Query: 187 TLRIQGKGDKIRIVPLLPSVRK--AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           T+  Q   D I   P   S  +  +I +       DL +N +  +F+   G   +P    
Sbjct: 231 TITKQRNRDGIVSKPKTESSVRTVSITKDLYNLLQDLKVNKKKLIFQQPNGIVPDPSSLN 290

Query: 245 RYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYT 299
             +++L +  G+       H+LRH+    LL+ G D+ +I   LGH  +S TT+IY 
Sbjct: 291 FALKRLMKECGIKRHGFHFHSLRHTHVALLLNAGVDILTISQRLGHKNVSTTTEIYA 347


>gi|153808173|ref|ZP_01960841.1| hypothetical protein BACCAC_02459 [Bacteroides caccae ATCC 43185]
 gi|149129076|gb|EDM20292.1| hypothetical protein BACCAC_02459 [Bacteroides caccae ATCC 43185]
          Length = 267

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 106/287 (36%), Gaps = 34/287 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            L++ T+ SY    + FL                 +++   + A+      +    +++ 
Sbjct: 13  NLARNTVTSYVWTVQYFLNHYG-------------EVNKRNLLAYKGYL-VENFKPQTVN 58

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             L GI  +L++ K+ K+        ++ +K        L  +  ++  D   L    + 
Sbjct: 59  LRLQGINQYLEFTKQEKL-------KVKFVKVQQK--NFL--ENVISDADYKFLKAQLKA 107

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              D     +++ +   G R+SE L +  ++I      L +  KG KIR + +  ++R  
Sbjct: 108 DGYDEW-YFVVWFMAATGARVSELLHIKAEHI--KVGYLDLYSKGGKIRRLYIPKNLRTE 164

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHS 268
             ++               +F    G+ +        ++      G+       H+ RH 
Sbjct: 165 AEKWLKNKGL-----TSGYIFLNRFGQRITTRGIASQLKHFAEKYGMNKDVVYPHSFRHR 219

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           FA + L    DL  +  ++GH  + TT+IY    +      + ++ +
Sbjct: 220 FAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDKVVN 266


>gi|312866616|ref|ZP_07726831.1| site-specific tyrosine recombinase XerS [Streptococcus
           parasanguinis F0405]
 gi|311097915|gb|EFQ56144.1| site-specific tyrosine recombinase XerS [Streptococcus
           parasanguinis F0405]
          Length = 356

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/323 (16%), Positives = 111/323 (34%), Gaps = 45/323 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  +  +F  ++         T  +I +  +  ++  ++ +FI   R +   
Sbjct: 33  YSFTTLYEYLKEYDRFFTWVLESGISDADTMAEIPLDVLEHMTKKDMESFILYLRERPLL 92

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                   +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 93  NANTTKNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATKKKKETLAA 152

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA--------RNSAILYLLYGCGLRIS 171
           +  N   +     +    ++ +                     R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETEGFLNYIDQEYPQTLSNRALSSFNKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLF 230
           EA++L  +++      + +  KG K   V +    +  + +Y  +             LF
Sbjct: 213 EAVNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLEQYLAIRDKRYKTEKTDTALF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
             +       ++    ++ + +        +  T H LRH+ AT L         +   L
Sbjct: 273 LTLYRGVPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH     T +YT++ +    + +
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNAL 353


>gi|206976186|ref|ZP_03237095.1| transposition regulatory protein TnpA [Bacillus cereus H3081.97]
 gi|206745640|gb|EDZ57038.1| transposition regulatory protein TnpA [Bacillus cereus H3081.97]
          Length = 371

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 59/349 (16%), Positives = 129/349 (36%), Gaps = 80/349 (22%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+ L+   G S  T ++Y    + F  +L        T +  + + + ++  F+   R
Sbjct: 30  KYLKYLDTT-GKSSNTQRTYCYSLKHFFTYLEE------TNRNYKYIRFEDLVEFVGWLR 82

Query: 80  TQKIGDR--------------SLKRSLSGIKSFLKYLKKRKITTES-------------- 111
           +     +              ++  +++ + +F  YL + +                   
Sbjct: 83  SPYKSSKITPFQLEKSIRTEKTINLTITVLANFYDYLYRNEEIQNDMMKKLMKQAFTDRH 142

Query: 112 ---------------NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
                          +I N+  +K+     R L ++Q   ++              + R+
Sbjct: 143 SRYKGFLHHVTQDKPSIRNILKIKEPRKKVRTLTKEQVQQVL----------NTTTNIRD 192

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQ-----------GKGDKIRIVPLLP 204
           + ++ LL+  GLRI E LSL  ++ + D     RI+                 R + +  
Sbjct: 193 TFLIQLLFETGLRIGEVLSLFIEDFIFDHTKGHRIRLVNRGELENGAKLKTGEREIFVSQ 252

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRG----KPLNPGVFQRYIRQLRRYLGLPLST 260
           S+     +Y      +L+++    LF  +RG    KP+         ++L++  GL  + 
Sbjct: 253 SLMDLYDDYLYEIIDELDVHTNF-LFIKLRGENTGKPMTYSDVGSLFKRLKKKTGL--NL 309

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGD 308
             H  RH+ AT       +++ +Q  LGH ++ TT  +Y + + ++   
Sbjct: 310 HPHLFRHTHATIYYQKTKNIKQVQERLGHSQIQTTMNLYLHPSDEDIRK 358


>gi|213971608|ref|ZP_03399717.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato T1]
 gi|301382010|ref|ZP_07230428.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. tomato Max13]
 gi|302058347|ref|ZP_07249888.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. tomato K40]
 gi|302131112|ref|ZP_07257102.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213923637|gb|EEB57223.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato T1]
          Length = 321

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 63/295 (21%), Positives = 120/295 (40%), Gaps = 18/295 (6%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            ++ K  + +L  L      S+LT+     D    L          I     + L    +
Sbjct: 20  PDVNKPLRLYLDRLAPS---SRLTMTYVLQDAADRLGMADV----DIHDIPWQTLQPGHV 72

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRAL 129
            A ++  R       +    ++ I+  +    +  + +   +L +R++K      L +  
Sbjct: 73  TALVATLREDDYAPNTTSLYVNAIRGVMNEAWRHDLISHDQLLKIRSIKPVSGTRLAKGR 132

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           N +   TL+  ++   + + +    R++AI+ +LYG G+R SE+++L    I   + +LR
Sbjct: 133 NIR--RTLIRELMEACAADPRPQGRRDAAIIAILYGSGMRKSESVNLDLAQIDFAERSLR 190

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNP-GVFQR 245
           + GKG+K  I        KA+ ++ +L    L       LF   R  RG  +    + + 
Sbjct: 191 VMGKGNKQLIKYAPEWAFKALNDWLELRRSCLQPGQGDDLFLFNRIRRGSHITRDRITKH 250

Query: 246 YIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            I  + +  G  + +    H  R SF T ++    DL   Q +  H  +STT  Y
Sbjct: 251 AIYFIAKQRGRQVGVDIMPHDFRRSFITRVIEE-FDLSIAQKLAHHTHISTTASY 304


>gi|328885775|emb|CCA59014.1| site-specific recombinase, phage integrase family [Streptomyces
           venezuelae ATCC 10712]
          Length = 283

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 101/270 (37%), Gaps = 35/270 (12%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +R ++  ++++++ K      G  +++R+ +   S +K   +  + + +    +   K++
Sbjct: 10  LRDIARLDVQSWVRKMTVAGTGASAIRRAYNLTSSIMKAAVEEDLISVTPCRGIDLPKEA 69

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
              P+     QA  ++             +D     +  L +  GLR  E   L    I 
Sbjct: 70  VKPPQWFTVPQAQAIL-----------AKLDQPWQTMALLAFYTGLRWGELAGLHGHRID 118

Query: 183 DDQSTLRI------------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
             +S L +                   R VP+   V +A+  +      D    +   + 
Sbjct: 119 WRRSRLFVVEVNTKSGIKEYPKSSRSRREVPIPDHVLEALARHMHGREKDGV--VFTTVT 176

Query: 231 RGIRGKPLNPGVFQRYIRQ-LRRYLGLPL---------STTAHTLRHSFATHLLSNGGDL 280
           +G  G+ L+ G +++Y+     +                   H++RH+ A+ L+ NG  L
Sbjct: 177 KGRAGRLLDDGNWRKYVWWPAVKEATFLDFAGDLRPLPHYPPHSMRHTCASWLVQNGVSL 236

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
             +Q +LGH    TTQ Y ++        +
Sbjct: 237 YEVQHLLGHESYQTTQRYAHLAPDAHQAVL 266


>gi|302346799|ref|YP_003815097.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302150507|gb|ADK96768.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 412

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 108/278 (38%), Gaps = 17/278 (6%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
                +FL     Y  + I +Q        ++  + +K +  K+        L+ + S L
Sbjct: 137 RKHLAKFLRH--RYHVDDIPVQKADTALIKDLEEYFAKEKGFKLNTS--AGYLTMLASLL 192

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           K L KR I      +   +++     PR +  ++   +       + +E +  +  +  +
Sbjct: 193 KDLHKRHIIDIYPFIA-HSIRWDVGTPRYITREEVNRI----AALSDNELQGYEQVSRDM 247

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDL 216
                  GL  ++   LT ++I+ +     I+    K   I  +PLLP     I  Y  +
Sbjct: 248 FLFSCYTGLSYTDVYHLTAEHIIHESDMDWIRKPRIKTGNICHIPLLPEASAIIERYRGI 307

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LS 275
                           I G          +++++ R  G+  + T H  RH+FA+ + LS
Sbjct: 308 HTRAFRHEPPKGYLLPIPGC----DTVNIHLKKIARLCGIQKTLTFHMARHTFASQMTLS 363

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G  + S+  +LGH ++ TTQ+Y   + +     + +I
Sbjct: 364 EGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKI 401


>gi|159897208|ref|YP_001543455.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890247|gb|ABX03327.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 287

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/293 (17%), Positives = 103/293 (35%), Gaps = 30/293 (10%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +  + +L     ER  S  T+ +Y     +F  ++     +         L+   +RA
Sbjct: 2   ITQWIEEYLSAKIAERR-SPATITTYRIRLGRFGTWVLEQPNQ--------VLTRALLRA 52

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           + +    Q I   S    L+     +++L +           ++  +    LP      Q
Sbjct: 53  YSAYLAQQNISITSHYSYLNDALVLVRWLAEEGYIQPVKTDKLK-PRLPKRLPAHYTMDQ 111

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+    L              A+L +L   G+R+SE + L   +    +    I GK
Sbjct: 112 IKRLLLVAELRE-----------KAMLCVLLDTGVRVSELIQLRRTSFD-SEGCAMILGK 159

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRR 252
           G K R + +    ++ +  Y          +    LF   R +  L      +   ++  
Sbjct: 160 GSKDRYIWISSVTQEVLRTYIASR-----TDTNPALFVSHRQQKTLTISGVHQSFDRVAS 214

Query: 253 YLGLPLSTT--AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              +        H+ R +FA  L+  G D  S++ ++GH  +  +  Y  ++S
Sbjct: 215 DAEIRNDVRRLIHSFRATFARELIKKGLDAESLRVLMGHETIQMSLHYAQLSS 267


>gi|313113306|ref|ZP_07798907.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
 gi|310624374|gb|EFQ07728.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
          Length = 416

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 60/320 (18%), Positives = 116/320 (36%), Gaps = 49/320 (15%)

Query: 21  WLQNL--EIERGLS---KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +L  L   ++   +     T  SY     + +        E + ++ + +++   +  F 
Sbjct: 96  FLDYLNEWVQVHKASIQPATFISY----NRMITGRITQYFEPLGLK-LCEVTPQVLDEFQ 150

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            K   +     ++    +      K   ++     + +L +   KK++  P   ++ +  
Sbjct: 151 EKILLEGYTTNTVIHYHAIFGKAFKDAVRKDYLETNPMLKVDRPKKNSFRPNFYSKDEVQ 210

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK-- 193
            L++             D  +  IL   Y  GLR SE L L   +I  ++ ++ I  K  
Sbjct: 211 QLLE---------VSQDDPLHLCILITAYY-GLRRSEVLGLKWSSIDFERKSITINHKVT 260

Query: 194 ------------------GDKIRIVPLLPSVRKAILE-------YYDLCPFDLNLNIQLP 228
                                 R +PL+P+V + +L+       Y  L     +      
Sbjct: 261 EQLVNGKYVPVVSDVMKNKTSCRTLPLIPAVEEELLKQKEKQQLYRKLFKKSYSTEYLDF 320

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +     GK + P     +   L    GL      H LRHS A+ ++ NG  ++ +Q  LG
Sbjct: 321 VCTDQEGKLIRPNFVTEHFDWLLTKYGL-KHIRFHDLRHSCASLMVMNGVSMKQVQEWLG 379

Query: 289 HFRLSTT-QIYTNVNSKNGG 307
           H   STT  IY +++ K+  
Sbjct: 380 HSTFSTTADIYAHLDYKSKQ 399


>gi|293365468|ref|ZP_06612177.1| phage integrase family integrase/recombinase [Streptococcus oralis
           ATCC 35037]
 gi|307703424|ref|ZP_07640366.1| tyrosine recombinase xerD [Streptococcus oralis ATCC 35037]
 gi|322375255|ref|ZP_08049768.1| integrase/recombinase, phage integrase family [Streptococcus sp.
           C300]
 gi|291315836|gb|EFE56280.1| phage integrase family integrase/recombinase [Streptococcus oralis
           ATCC 35037]
 gi|307622831|gb|EFO01826.1| tyrosine recombinase xerD [Streptococcus oralis ATCC 35037]
 gi|321279518|gb|EFX56558.1| integrase/recombinase, phage integrase family [Streptococcus sp.
           C300]
          Length = 356

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 116/326 (35%), Gaps = 51/326 (15%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYT------EEKITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  +  +F  ++             I +  +  +S  ++ AFI   R     
Sbjct: 33  YSFTTLYEYLKEYDRFFSWVLESGISNADKMSDIPLSVLENMSKKDMEAFILYLRERPLL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKR--------------------KITTESNIL 114
                 Q +   ++ R+LS + S  KYL +                     K   E+   
Sbjct: 93  NANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDLGEPYFYRNVMKKVSTKKKKETLAA 152

Query: 115 NMRNLKKSNSLPR----ALN--EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
              N+K+   L       L   +++    + N  L + ++ K    R+ AI+ LL   G+
Sbjct: 153 RAENIKQKLFLGDETEGFLTYIDQEYPQQLSNRALSSFNKNK---ERDLAIIALLLASGV 209

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQL 227
           R+SEA++L  +++      + +  KG K   V +    +  +  Y  +            
Sbjct: 210 RLSEAVNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKTDT 269

Query: 228 PLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
            LF  +       ++    ++ + +        +  T H LRH+ AT L         + 
Sbjct: 270 ALFLTLYRGVPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVS 327

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWM 310
             LGH     T +YT++ +    + +
Sbjct: 328 HQLGHASTQVTDLYTHIVNDEQKNAL 353


>gi|168178695|ref|ZP_02613359.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum NCTC 2916]
 gi|182671520|gb|EDT83494.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum NCTC 2916]
          Length = 356

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 61/303 (20%), Positives = 128/303 (42%), Gaps = 36/303 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+++ + +     T++ Y+    +F           +  + IR +   +++  I   
Sbjct: 74  EIYLEHIILYKEY--YTVKGYKDCFSKF---------NALNDKKIRAMQRCDVQKIIDNF 122

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLK-KSNSLPRALNEKQALT 136
             + +   +++  L  I +F KY++    +  E    N++  K KSN+  +ALN+K+   
Sbjct: 123 IKEGLKQSTIETYLRRINTFFKYVRDDLNLIIELPTTNIKIPKEKSNTNKKALNKKELYN 182

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L++N+  +              + ++    G+R+ E L LT  ++    +T+ +  +   
Sbjct: 183 LLENLKNNKF----------YIVAFIAANTGMRLGEILGLTWNDVDFKDNTVNVNKQWKI 232

Query: 197 IRI------VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           ++            +  + I    ++     N     P     R  P +      Y+   
Sbjct: 233 LKNGKSGFGPVKSKNSNRIIPISKNVKNELKNYKKNNPTDIYNRVAPFSTNSINNYLNSK 292

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            R L    S + H LRH++AT L+S+G D +++  ILGH    T +IY++VN     D M
Sbjct: 293 LRELA---SISLHELRHTYATLLISSGIDFKTVAKILGHDVEQTMRIYSHVND----DMM 345

Query: 311 MEI 313
            + 
Sbjct: 346 KKA 348


>gi|149922734|ref|ZP_01911160.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149816439|gb|EDM75939.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 374

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/266 (20%), Positives = 105/266 (39%), Gaps = 28/266 (10%)

Query: 48  IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI 107
             L  +       + + +L   ++  F +K   +   ++++    + + + LK     K+
Sbjct: 103 RHLRIHILPAFGDKRLDELEQEDLERFKAKL-GETRKNKTINNIQTTLSTLLKAAVAWKV 161

Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
             E  +  ++ L+         +  +   L +      S      D  + AI+ L    G
Sbjct: 162 IEEVPVE-IKRLRVVRKKMDFFDFDEFAWLREFAAKAPS------DGIDLAIVLLGGDAG 214

Query: 168 LRISEALSLTPQNIMDDQSTLRIQG----------KGDKIRIVPLLPSVRKAILEYYDLC 217
           LR  E   L   ++   ++ L ++           K DKIR++P+   + KA+ +    C
Sbjct: 215 LRAGEIRGLHWDSLDFQRNRLTVERAEWHGHITTPKHDKIRVLPMTQRLNKALRQLPREC 274

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
              L      P         L  G+  + +R++ +  GL      HTLRH+F +HL   G
Sbjct: 275 KLVLPQPSGEP---------LTAGLLDKRLRRVEKRAGL-RDKGPHTLRHTFCSHLAMRG 324

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNS 303
              R IQ + GH  L TT+ Y +++ 
Sbjct: 325 IPARVIQQLAGHSSLVTTERYMHLSP 350


>gi|313631675|gb|EFR98906.1| transposase A from transposon [Listeria seeligeri FSL N1-067]
          Length = 354

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 65/346 (18%), Positives = 135/346 (39%), Gaps = 50/346 (14%)

Query: 16  KERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           K  Q  LQ ++       S  T ++Y    R + +FL+      +T  +    +   I  
Sbjct: 23  KPIQPVLQYMKYLDNTQKSPNTQRTYCYALRDYFVFLS------LTETSYELANIKTIAN 76

Query: 74  FISKRRTQKI-GDRSLKRSLSGIKSFLKYLKKRKITTESNI----LNMRNLKKSN----- 123
           F+S      +  ++++   ++ + SF K+L + +           ++++ +K+       
Sbjct: 77  FLSWLVNPTLKSEKTVNLKVTAVLSFYKFLYQFEHIEYDVAQRAYVDVKGIKQYKGFLHH 136

Query: 124 ----------SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
                      L     + +  T+ D  L      T   + R+  +L LLY  GLRI E 
Sbjct: 137 IXXXKRVSESILKLKEPKSRVETIPDFTLQAALGATT--NVRDFFLLRLLYETGLRIGEI 194

Query: 174 LSLTPQNIMDD-QSTLRIQ-----------GKGDKIRIVPLLPSVRKAILEY-YDLCPFD 220
           LSL  ++I+ D     R++            +   +R V +  ++     +Y Y +  FD
Sbjct: 195 LSLHKEDILFDLHQGHRVRLVYRKEQPNDSRQKTGLREVHISANLIDLFDDYMYSILDFD 254

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
            + ++ + +    +G PLN        +++     +      H  RH+ AT       D+
Sbjct: 255 RSDSLFVKVKGKSQGLPLNYQDVMATFKRI--EGKIEYHLHPHLYRHTHATKYYEQTKDI 312

Query: 281 RSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           + +Q  LGH  + TT  +Y +   K     +   +++  P+   ++
Sbjct: 313 KIVQERLGHKHIQTTMNLYLHPTDKE----IRAQWEKASPAFRMEE 354


>gi|42782202|ref|NP_979449.1| Tn554-related, transposase A [Bacillus cereus ATCC 10987]
 gi|229021361|ref|ZP_04177991.1| Tn554-related, transposase A [Bacillus cereus AH1273]
 gi|229024663|ref|ZP_04181108.1| Tn554-related, transposase A [Bacillus cereus AH1272]
 gi|229112909|ref|ZP_04242439.1| Tn554-related, transposase A [Bacillus cereus Rock1-15]
 gi|42738127|gb|AAS42057.1| Tn554-related, transposase A [Bacillus cereus ATCC 10987]
 gi|228670540|gb|EEL25854.1| Tn554-related, transposase A [Bacillus cereus Rock1-15]
 gi|228736728|gb|EEL87278.1| Tn554-related, transposase A [Bacillus cereus AH1272]
 gi|228739926|gb|EEL90293.1| Tn554-related, transposase A [Bacillus cereus AH1273]
          Length = 372

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 59/348 (16%), Positives = 135/348 (38%), Gaps = 78/348 (22%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+ L+   G S+ T ++Y    +Q+ ++L        T +  +++   ++  F+   R
Sbjct: 29  KYLKYLDST-GKSRNTQKTYCYALKQYFLYLRE------TEKNYKEIKLEDLADFVGWLR 81

Query: 80  --------------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTES-------------- 111
                           K  ++++  +++ + +F  YL + +  ++               
Sbjct: 82  HPYTSLHVASITPVKSKKTEKTVNLTVTAVTNFYDYLYRNEEISKDMNEKLMRQIYAGGR 141

Query: 112 ---------------NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
                          +I N+  +K+     + L ++Q               T   + R+
Sbjct: 142 TRYKSFLHHINKNKPSIRNVLKVKEPRKRIQILTKEQVRQTF----------TATTNIRD 191

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDD---QSTLRIQGKGD---------KIRIVPLLP 204
           + ++ LL+  GLRI EALSL  ++ + D      +R++ +G+           R + +  
Sbjct: 192 AFLIQLLFETGLRIGEALSLYLEDFIFDYKKGHRIRLRDRGELENGAKLKTGEREIFVSQ 251

Query: 205 SVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            +     +Y      +L++        L     G+P+N    +   ++LR+   +     
Sbjct: 252 HLMDLYDDYLYEIIDELDIETNFVFIKLRGRNMGRPMNYSDVESLFKRLRKKTKID--IH 309

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGD 308
            H LRH+ AT       D++ +Q  LGH ++ TT  +Y + + ++   
Sbjct: 310 PHLLRHTHATIYYQETKDIKQVQERLGHAQIQTTMNLYLHPSDEDIRK 357


>gi|281421789|ref|ZP_06252788.1| site-specific recombinase, phage integrase family [Prevotella copri
           DSM 18205]
 gi|281404147|gb|EFB34827.1| site-specific recombinase, phage integrase family [Prevotella copri
           DSM 18205]
          Length = 267

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 111/301 (36%), Gaps = 38/301 (12%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++ + + +L    ++  L+K T+ SY    + FL                ++++   + A
Sbjct: 1   MVTQFEKYL----VKSNLAKNTVTSYLWTMKYFL-------------DNYKEVNKKNLLA 43

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +      +    +++   L  +  +L++ K+ K+        M+ +K        L  + 
Sbjct: 44  YKGYLM-ENFKPQTVNLRLQAMNKYLEFSKQEKL-------KMKFVKAQQK--NFL--EN 91

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
            ++  D   L    +    D     I++ +   G R+SE L +  +++      L +  K
Sbjct: 92  VISDADYKFLKAKLKADGYDEW-YFIVWFMAATGARVSELLQIKAEHVAV--GYLDLYSK 148

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K+R + +   +      +               LF    G  L+       ++     
Sbjct: 149 GGKMRRLYIPKKLCTEAQRWLTEQNI-----TSGYLFTNRLGNRLSTRGIAIQLKYFAEK 203

Query: 254 LGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            GL  +    H+ RH FA + L    D+  +  ++GH  + TT+IY    +      + +
Sbjct: 204 YGLNRNVVYPHSFRHRFAKNFLDRFNDIALLADLMGHESIETTRIYLRRTASEQQKIVDK 263

Query: 313 I 313
           +
Sbjct: 264 V 264


>gi|303235718|ref|ZP_07322325.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302484165|gb|EFL47153.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 406

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 65/311 (20%), Positives = 123/311 (39%), Gaps = 37/311 (11%)

Query: 14  LLKERQNWLQN----LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR--QLS 67
           LL+    +LQ+    + I+R L    L++Y+         L  Y  +K  +  I    L 
Sbjct: 110 LLECNAAYLQHTKERIGIDRALKTFKLRTYQSSL------LREYVNKKYKLSDIPLVGLD 163

Query: 68  YTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
            T I  +       +K+   S+  +LS +K+ +    K+        +   + +K+   P
Sbjct: 164 KTFIEGYEYYLTVDRKLKRASISSTLSALKTIVSMAVKKGFLDLDPFIGY-SYEKAKGTP 222

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R + +++   ++   +        +   R+  +       GL IS+  +L  +NI+ ++ 
Sbjct: 223 RNITQEELQKIISLHI----EWDNYRIVRDLFVFSCF--TGLAISDVRNLKEENIVCEEG 276

Query: 187 TLRIQGKGDKIRIVP---LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
            L I+GK  K +      +LP  +  +  Y                  G         + 
Sbjct: 277 KLCIKGKRVKTKTPYRVQILPPAKAIMERYRGKRA-------------GYVFDVPTVDIV 323

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFA-THLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              +  ++R +G+    T H  RH+FA    LS G  + ++  +LGH  L TTQ+Y  VN
Sbjct: 324 HNAMHHIQRNIGMKTPLTFHMARHTFASVITLSAGVPIETVSGMLGHTNLRTTQVYAAVN 383

Query: 303 SKNGGDWMMEI 313
           S+     M  +
Sbjct: 384 SERIRQDMRRV 394


>gi|225388191|ref|ZP_03757915.1| hypothetical protein CLOSTASPAR_01926 [Clostridium asparagiforme
           DSM 15981]
 gi|225045749|gb|EEG55995.1| hypothetical protein CLOSTASPAR_01926 [Clostridium asparagiforme
           DSM 15981]
          Length = 300

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 118/296 (39%), Gaps = 43/296 (14%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           I++ + + +   WL   E     S+ T+Q YE    +F+ F+             R +  
Sbjct: 8   IITTQKIDDYCLWLDRCE----RSRETIQKYEYYLTRFMEFM-----------DCRPVDK 52

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN----S 124
             +  + S  R + +   ++  +L+ +  F KY   +           R LK S      
Sbjct: 53  EMVILWKSILR-ENLAPVTVNGALAALNGFFKYCDWQD-------CRARFLKISKNTFYP 104

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
             R L++K+ L LV    +  +          + +L  +   G+R+SE   +T   +   
Sbjct: 105 ESRELSKKEYLRLVRTAAVQGNERL-------ALLLETICSSGIRVSELPFITVAALHKG 157

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           Q+ +  +G   +IR V L   + + +L+Y      +  +     +F    GK LN     
Sbjct: 158 QAEVECKG---RIRTVLLTKKLCRILLDYAARRGIESGM-----IFVTRSGKALNRSNIW 209

Query: 245 RYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           R ++ L     +       H LRH FA    +   DL  +  ILGH  ++TT+IYT
Sbjct: 210 REMKALGLKANVDREKIFPHNLRHLFARTYYAMTKDLSKLADILGHKDINTTRIYT 265


>gi|168184262|ref|ZP_02618926.1| XerC/D integrase-recombinase protein [Clostridium botulinum Bf]
 gi|182672603|gb|EDT84564.1| XerC/D integrase-recombinase protein [Clostridium botulinum Bf]
          Length = 320

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/296 (17%), Positives = 115/296 (38%), Gaps = 19/296 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRAFIS 76
            +++L       G  + T++S E        F  +   + + + + I++L+  +I   I 
Sbjct: 21  YEDYLNYCTSI-GQREKTIESKER-------FGKYELIKVVNLDSNIKELTKEKIEKHII 72

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             R +     + +  +  I++FL Y       T+   + + N+           E++ + 
Sbjct: 73  NMRKEGYKGNTYQTYIIKIRAFLSYCFNNNYLTKF-TVKIPNVLLEKK--EVYTEEEVIK 129

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+    ++T     +      AI   L   G R    L++  +++     ++  +    K
Sbjct: 130 LLKKPNINTCLVGDFRSW---AICSFLLSTGCRAETLLNVHVEDVNFSTDSILFRHMKTK 186

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            +I   L +  K  L  Y        L  +  LF  + G+ +      + ++   ++  +
Sbjct: 187 RQITVPLSNTLKVNLMEYIQRM---GLKQEDYLFPLLNGEKMKYDTCHQNLKNYFKHRNV 243

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                 +T R++FAT  L NG  +  +Q  LGH  +  T+ Y N+   +  + + +
Sbjct: 244 KFHGV-NTFRNTFATMALKNGAGIYLVQKCLGHADIKMTERYINLLPLDVKNDIQK 298


>gi|332360892|gb|EGJ38698.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK49]
          Length = 357

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 111/326 (34%), Gaps = 45/326 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  +  +F  ++            +I +  +  ++  ++ AFI   R +   
Sbjct: 34  YSFTTLYEYLKEYDRFFNWVLESGITDASHIAEIPLSVLENMTKKDMEAFILYLRERPLL 93

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                   +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 94  NANTTQNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVSTKKKKETLAA 153

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA--------RNSAILYLLYGCGLRIS 171
           +  N   +     +    +  +      +              R+ AI+ LL   G+R+S
Sbjct: 154 RAENIKQKLFLGDETEEFLLYIDREYPKKLSNRALSSFNKNKERDLAIIALLLASGVRLS 213

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLF 230
           EA++L  ++I      + +  KG K   V +    +  + EY ++              F
Sbjct: 214 EAVNLDLKDINLKMMVIEVTRKGGKRDSVNVAAFAKPYLEEYLNIRSKRYKAEKTDTAFF 273

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +        +  T H LRH+ AT L         +   L
Sbjct: 274 LTEYRGSPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQL 331

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH     T +YT++ +    + + ++
Sbjct: 332 GHASTQVTDLYTHIVNDEQKNALDKL 357


>gi|307709265|ref|ZP_07645723.1| tyrosine recombinase xerD [Streptococcus mitis SK564]
 gi|307619848|gb|EFN98966.1| tyrosine recombinase xerD [Streptococcus mitis SK564]
          Length = 356

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/323 (16%), Positives = 108/323 (33%), Gaps = 45/323 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  +  +F  ++             I +  +  +S  ++ AFI   R     
Sbjct: 33  YSFTTLYEYLKEYDRFFSWVLESGISNADKMSDIPLSVLENMSKKDMEAFILYLRERPLL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                 Q +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 93  NANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAA 152

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA--------RNSAILYLLYGCGLRIS 171
           +  N   +     +    +  +      +              R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETERFLTYIDQDYPQQLSNRALSSFNKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLF 230
           EA++L  +++      + +  KG K   V +    +  +  Y  +             LF
Sbjct: 213 EAVNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKTDTALF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
             +       ++    ++ + +        +  T H LRH+ AT L         +   L
Sbjct: 273 LTLYRSVPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH     T +YT++ +    + +
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNAL 353


>gi|268611299|ref|ZP_06145026.1| phage integrase family site specific recombinase [Ruminococcus
           flavefaciens FD-1]
          Length = 360

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/282 (19%), Positives = 111/282 (39%), Gaps = 24/282 (8%)

Query: 46  FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR 105
           +L+    +   +   +TI  +    + +FI   +++K+  R ++  L  + S  KY    
Sbjct: 84  YLMKAKKHILPEFGEKTISSIQKDSLYSFIKTLQSKKLSSRYIRDILVLLSSVFKYAVNT 143

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
                +   ++   KK  S  + L+E +   L D +  + +  T          + L Y 
Sbjct: 144 YHI-YNPFDDVVIPKKKYSDVKLLDEDEQQILRDELFSNPNRTTLG--------IALSYY 194

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE------------- 212
            G+RI E  +L  ++I  ++  L ++    +I++    P  +  I E             
Sbjct: 195 TGIRIGELCALQWKDIDIEKRLLTVRKTVQRIQLPYGTPKTKVIITEPKSESSVRVIPIP 254

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
              +    +            + KP  P   Q       + +GLP S   H LRH FA++
Sbjct: 255 DCIITLMKIYKGNLDDFILSGKEKPTEPRTMQYRFNSFLKNVGLP-SIHFHALRHLFASN 313

Query: 273 LLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
            +  G D++S+  ILGH  +  T   Y + + +   +++  +
Sbjct: 314 CIKLGADVKSLSEILGHSSVEITLNRYVHSSFEMKREYLNRL 355


>gi|431134|gb|AAC36984.1| ORF4 [Enterococcus faecalis]
          Length = 324

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 109/295 (36%), Gaps = 35/295 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +    ++K+ +++I  +  ++ + +  +        +++      +K+      +     
Sbjct: 29  MDILKKDKLGVRSIDSIKPSDAKEWAIRMSENGYAYQTINNYKRSLKASFYIAIQDDCVR 88

Query: 110 ESNI-LNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     ++ +   +++P+  L E+Q   L+         +     ++N   + +L   G
Sbjct: 89  KNPFDFQLKAVLDDDTVPKTVLTEEQEEKLL------AFAKADKTYSKNYDEILILLKTG 142

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAIL 211
           LRISE   LT  ++  +   + I                       R VP++    +A  
Sbjct: 143 LRISEFGGLTLPDLDFENRLVNIDHQLLRDTEIGYYIETPKTKSGERQVPMVEEAYQAFK 202

Query: 212 EYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTA 262
                   D  + I      LF   +  P     +   ++ L +         LP   T 
Sbjct: 203 RVLANRKNDKRVEIDGYSDFLFLNRKNYPKVVSDYNGMMKGLVKKYNKYNEDKLP-HITP 261

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQ 316
           H+LRH+F T+  + G + +++Q I+GH  ++ T   Y +    +    M  +  +
Sbjct: 262 HSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMKRLNKE 316


>gi|294506505|ref|YP_003570563.1| Phage integrase family protein [Salinibacter ruber M8]
 gi|294342833|emb|CBH23611.1| Phage integrase family protein [Salinibacter ruber M8]
          Length = 413

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/312 (18%), Positives = 117/312 (37%), Gaps = 24/312 (7%)

Query: 19  QNWLQNLEIE-RGLSKL----TLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIR 72
           +++L     + +G  +     T +SY    R+F  F+   Y  E++    +    + E R
Sbjct: 108 EDFLAFAREKVKGYKRRGQIGTFRSYRTTCRKFTAFIEETYGREEVPFGALEAELFREFR 167

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            +  + R       ++ R L  +++ +++  K    +     ++  +    S    L  +
Sbjct: 168 TYCYEER--GNSTNTVGRELGIMRTLVRHAMKEGKLSGYPFEHI-TIDSEPSQKELLTPE 224

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ----STL 188
           +   + D  +     E           L+  Y  G+R S+  +L  Q+I + +       
Sbjct: 225 EVERIADLEI----DEESPAAEARRWFLFAYYAGGMRFSDVATLQWQHIREGRSGRPRVC 280

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-----IRGKPLNPGVF 243
               K      VPL+P  ++ +  Y +    D    I   +  G      R K       
Sbjct: 281 YKMKKTADTVGVPLIPEAKEILGYYEEGDGEDWVFPISEGIDPGDEEALHRRKCQRNSAA 340

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN--V 301
            R++++L    G+    T H  R++ A  L  N GD+  +   LGH  +  TQ Y +  V
Sbjct: 341 NRHLKELAGRAGIEKRVTFHLSRNAAAWKLYQNVGDIYKVSKFLGHSNVEQTQDYIDGFV 400

Query: 302 NSKNGGDWMMEI 313
           +     D++  +
Sbjct: 401 DESRDEDFIAAM 412


>gi|258612347|ref|ZP_05270117.2| DNA integration/recombination/invertion protein [Listeria
           monocytogenes F6900]
 gi|293596731|ref|ZP_05263903.2| DNA integration/recombination/invertion protein [Listeria
           monocytogenes J2818]
 gi|258611034|gb|EEW23642.1| DNA integration/recombination/invertion protein [Listeria
           monocytogenes F6900]
 gi|293591908|gb|EFG00243.1| DNA integration/recombination/invertion protein [Listeria
           monocytogenes J2818]
          Length = 393

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 66/343 (19%), Positives = 126/343 (36%), Gaps = 50/343 (14%)

Query: 8   EIVSFELLKERQNW-LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           EI     +   + W L     +R L   T+  Y        +FL  +       + I ++
Sbjct: 65  EIKDMRFIDFVEKWRLNY--AKRELKGNTIDKYN-------LFLENWIIPYFERKKISKI 115

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           +  ++  +  + + + +G  +L+     I+S  KY     IT     L+++         
Sbjct: 116 TTMQLLDYFHEVQKKGVGPSALEGHHRVIRSLFKYATLWGITETDVSLSVKKPTYKVPEK 175

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
              N ++   L+D +        K +      ++ L   CGLR  E + LT +++  +++
Sbjct: 176 NIYNRREIEVLIDRI--------KILQKYQQVMIKLALYCGLRRGEVIGLTTKDMNYNKN 227

Query: 187 TLRIQG---------------KGDKIRIVPLLPSVRKAILEY-------------YDLCP 218
           T+ +                 K  + RIVP    + + I E                   
Sbjct: 228 TINVYRAVIKSASEGIKLDETKNKRKRIVPAPAGLMQEIKELAKEKQKNKDKLGLLWKGT 287

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL--STTAHTLRHSFATHLLSN 276
            DL+    + +F    G P  P    R   +             + H LRHS A+ LL  
Sbjct: 288 KDLDGKTVVLIFSHDDGTPFTPASVTRMFNRFLEKEENNDLTKISFHDLRHSAASFLLEQ 347

Query: 277 GGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTH 318
           G +++ IQ+ILGH  +  T   Y ++  ++G     + +D  +
Sbjct: 348 GINVKVIQNILGHSDIKVTLNTYAHIT-EDGYSEAAKTFDNFY 389


>gi|431132|gb|AAC36982.1| ORF2 [Enterococcus faecalis]
          Length = 405

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 109/295 (36%), Gaps = 35/295 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +    ++K+ +++I  +  ++ + +  +        +++      +K+      +     
Sbjct: 110 MDILKKDKLGVRSIDSIKPSDAKEWAIRMSENGYAYQTINNYKRSLKASFYIAIQDDCVR 169

Query: 110 ESNI-LNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     ++ +   +++P+  L E+Q   L+         +     ++N   + +L   G
Sbjct: 170 KNPFDFQLKAVLDDDTVPKTVLTEEQEEKLL------AFAKADKTYSKNYDEILILLKTG 223

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAIL 211
           LRISE   LT  ++  +   + I                       R VP++    +A  
Sbjct: 224 LRISEFGGLTLPDLDFENRLVNIDHQLLRDTEIGYYIETPKTKSGERQVPMVEEAYQAFK 283

Query: 212 EYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTA 262
                   D  + I      LF   +  P     +   ++ L +         LP   T 
Sbjct: 284 RVLANRKNDKRVEIDGYSDFLFLNRKNYPKVVSDYNGMMKGLVKKYNKYNEDKLP-HITP 342

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQ 316
           H+LRH+F T+  + G + +++Q I+GH  ++ T   Y +    +    M  +  +
Sbjct: 343 HSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMKRLNKE 397


>gi|33867206|ref|NP_898764.1| putative transposase [Rhodococcus erythropolis]
 gi|33669040|gb|AAP74034.1| putative transposase [Rhodococcus erythropolis]
          Length = 396

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/342 (18%), Positives = 116/342 (33%), Gaps = 71/342 (20%)

Query: 18  RQNWLQNLEIERGL-SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
            ++WL+     R L S  T++ Y     Q+  FL    E    +   R +    +  F+S
Sbjct: 32  VEDWLE---AHRHLWSPNTVRGYATSLAQWWSFLEQRGE----VDNWRNVGAPAVTGFLS 84

Query: 77  KRRTQKIGD------------RSLKRSLSGIKSFLKYLK--------------------K 104
             R  +  +             +L+  L+ + SF ++ +                     
Sbjct: 85  WLRNGRKIEHSLVPLQPVPEVSTLEARLAAVVSFYRWQEAVFGVPVAGKLMRGPSRRMPT 144

Query: 105 RKITTESNILNMRNL--------KKSNSLPRALNEKQALTLVDNVLLHTSHETKWID-AR 155
           R +    +                +  S P  L  +Q   +++   +  S   +W+   R
Sbjct: 145 RGLLAHLDARTAPRPSSLVRVRGHRGTSRPPVLLPRQIQEILNGCAVFDSATGEWVGNLR 204

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRI----------QGKGDKIRIVPL 202
           +  +  LL   G+R+ EAL L   + +  +     + I          + K  + R V +
Sbjct: 205 DRFLFALLADTGMRLGEALGLRISDFVMGRGGTPFVEIVPREDNTNGARVKMMRQRRVYV 264

Query: 203 LPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKPL----NPGVFQRYIRQLRRY 253
              + +   +Y          F + L+ Q PL   +   PL         +  +  LRR+
Sbjct: 265 GSDLERLFADYLTYIVCRAAEFGITLDEQSPLLVNVMRPPLLAALRETTVRDKVSALRRH 324

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
              P   T H  RH+ AT LL        +   LGH  + TT
Sbjct: 325 GAGPGDWTPHWFRHTHATALLLASTPEWVVSRRLGHAHVQTT 366


>gi|197285858|ref|YP_002151730.1| phage integrase [Proteus mirabilis HI4320]
 gi|194683345|emb|CAR44052.1| phage integrase [Proteus mirabilis HI4320]
          Length = 327

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 102/250 (40%), Gaps = 31/250 (12%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLK 120
            + Q++   I  + ++R  + I   ++ R L  I+     L K  +   E+  +  + LK
Sbjct: 97  NVSQVTSKSISFYQNERFAKGIKPSTINRELYAIRGIFSQLIKMGLYEAENPFIEAKKLK 156

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
            + S    L   +   L+ N           ++     I       G R  EA+ L  ++
Sbjct: 157 INASEMSYLTLDETRKLLAN-----------LEGDYYNIAVFCLSTGARWGEAMKLKREH 205

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I+++    +++    K R   ++P + K + +       DL       LF  +     + 
Sbjct: 206 IIEN----KVRFTYTKTRKARIVP-ISKELCDQICKGKKDL-------LFSSV-----SY 248

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            VF++ ++ +     LP     H LRH+FATH + NGG + ++Q ILGH  L  T  Y +
Sbjct: 249 QVFRKILKSV--KPSLPDGQATHVLRHTFATHFMINGGSIITLQRILGHASLKQTMTYAH 306

Query: 301 VNSKNGGDWM 310
                  D +
Sbjct: 307 FAPDFLQDAI 316


>gi|317480894|ref|ZP_07939975.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902979|gb|EFV24852.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 356

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 59/305 (19%), Positives = 108/305 (35%), Gaps = 47/305 (15%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR- 78
            + +NL IERG S+            ++ F  +   E         L+    + F+    
Sbjct: 75  EYFKNLMIERGSSQN-------WATAYMHFHNYTHGE----CRFCDLTVPYCQGFLDYLL 123

Query: 79  ------RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
                   +++   +   +L+ +K  L    +  +  E+    +   K   +  + L ++
Sbjct: 124 SDACMHNGKRMMGTTANNNLTKLKCILAIAYEDGLLKENIAKKLVRAKAHGNKRQFLTKE 183

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----MDDQSTL 188
           + L L        S      D    A L+     GLR+S+ + L  +NI           
Sbjct: 184 ELLQL--------SQTPCKSDVLRRAGLFSCL-TGLRLSDCIRLQWENIIKLADGGWGMD 234

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            I  K     I+P+     +   E                +F+      L       Y++
Sbjct: 235 IITKKTSTAAILPISEEALQLCGE-----------RGTGQVFKN-----LTNSTVTLYLK 278

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
              +  G+    T H  RH+FAT  L+ G D+ ++  +L H  L+TTQ+Y +V  +   D
Sbjct: 279 PWIKASGIEKHITFHCFRHTFATLQLAEGTDIYTVSKLLTHSNLATTQVYADVVDELKRD 338

Query: 309 WMMEI 313
               I
Sbjct: 339 AAERI 343


>gi|322420262|ref|YP_004199485.1| integrase family protein [Geobacter sp. M18]
 gi|320126649|gb|ADW14209.1| integrase family protein [Geobacter sp. M18]
          Length = 340

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/273 (19%), Positives = 110/273 (40%), Gaps = 29/273 (10%)

Query: 51  AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE 110
           A    E I    +  ++   +R  I K    K+   ++ R L  +K+ L+Y ++      
Sbjct: 88  ALRLIELIGDVQVGAINEDVVRKIIFKLEATKVKSATVNRYLEVLKTILRYKRQE----- 142

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
                +   K+     R L++ +    +  +        +    + + ++ +L   G R+
Sbjct: 143 --WDFIHLKKQPKGRIRVLSKPEEDKAIRLLRETDHCSRRHFYPQVADLVEILLDTGCRL 200

Query: 171 SEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
           SE L+L   ++  D + + I   KGD+ R +P+   VR+ + E                 
Sbjct: 201 SEVLNLPYDDVNFDTNLISIWINKGDRPRSIPMTYRVRRILQERQ--------------- 245

Query: 230 FRGIRGKPLNPGVFQ--RYIRQLRRYLGLPLSTTA--HTLRHSFATHLLSNGGDLRSIQS 285
            +  + KP +  ++Q  +    +R+ + L   T    H LRH+ AT L++ G DL  ++ 
Sbjct: 246 -KTNKKKPFSVTIYQAGKAWAWVRKEMKLERDTEFVLHALRHTCATRLVNKGVDLYVVKE 304

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
            LGH  +  T+ Y ++           + +  H
Sbjct: 305 WLGHSSIQVTERYAHLAPDKLAHA-AAVLEMYH 336


>gi|150006639|ref|YP_001301383.1| integrase [Bacteroides vulgatus ATCC 8482]
 gi|254881458|ref|ZP_05254168.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|319642845|ref|ZP_07997482.1| integrase [Bacteroides sp. 3_1_40A]
 gi|149935063|gb|ABR41761.1| integrase [Bacteroides vulgatus ATCC 8482]
 gi|254834251|gb|EET14560.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|317385520|gb|EFV66462.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 267

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 106/287 (36%), Gaps = 34/287 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            L+K T+ SY    + FL                 +++   + A+      +    +++ 
Sbjct: 13  NLAKNTVTSYVWTVQYFLNHYG-------------EVNKKNLLAYKGYL-VENFKPQTVN 58

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             L GI  +L++ K+ K+        ++ +K        L  +  ++  D   L    + 
Sbjct: 59  LRLQGINKYLEFTKQEKL-------KVKFVKVQQK--NFL--ENVISDADYKFLKAQLKA 107

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              D     I++ +   G R+SE L +  ++I      L +  KG KIR + +  ++R  
Sbjct: 108 DGYDEW-YFIVWFMAATGARVSELLHIKAEHIQI--GHLDLYSKGGKIRRLYIPKNLRTE 164

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHS 268
             ++               +F    G+ +        ++      G+       H+ RH 
Sbjct: 165 AAKWLREIGL-----TSGYIFLNRFGQRITTRGIASQLKHFAEKYGMNKEVVYPHSFRHR 219

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           FA + L    DL  +  ++GH  + TT+IY    +      + ++ +
Sbjct: 220 FAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDKVVN 266


>gi|29293004|gb|AAO73844.1|AF335469_1 FotS [Escherichia coli]
          Length = 199

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 77/183 (42%), Gaps = 6/183 (3%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L+EK+      + LL  + E ++   R+  ++ + +  GLR+SE ++L   +     +
Sbjct: 4   KYLSEKEV-----HCLLKAAAENQYS-VRDYCMISMAFIHGLRVSELVNLKVDDYDSLSA 57

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            L I+   +    +  L      +L+ +       + +    LF    G PL+   F + 
Sbjct: 58  QLNIKRLKNGFCTIQPLLPDENELLQCWLDERKTWDGHESCWLFLSKNGGPLSRQRFWQL 117

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +R+      L +    H LRH+   +L   G D R IQ  LGH  +  T  YT  N +  
Sbjct: 118 LRKYGDEAHLTIKVHPHMLRHACGFNLAERGNDTRLIQDYLGHRNIRHTVHYTASNPERF 177

Query: 307 GDW 309
            + 
Sbjct: 178 RNA 180


>gi|315608670|ref|ZP_07883650.1| integrase [Prevotella buccae ATCC 33574]
 gi|315249639|gb|EFU29648.1| integrase [Prevotella buccae ATCC 33574]
          Length = 420

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/295 (18%), Positives = 111/295 (37%), Gaps = 28/295 (9%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           +    F+     + I + TI +  + E R ++   + Q +   ++ R L  +   +    
Sbjct: 136 KLLCEFVKDKGVKDIPVITITEDLFEEYRFYL---KKQGLAAATINRYLCWLSRLMYRAI 192

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
            +++   +   N +  K    + R L +     L+   +     E          +    
Sbjct: 193 SQRLIRCNPFENTKYEKTEQKI-RFLQKNNVAKLMALKVNDKEAEQA------RRMFIFA 245

Query: 164 YGCGLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
              GL I++   L   +I    D Q  +R + +  K+  V  L  + +AI+E+      +
Sbjct: 246 CFTGLAIADMEHLQYGHIQTAADGQKYIRKERQKTKVEFVVPLHPIAEAIIEH-CKAEQE 304

Query: 221 LNLNIQLPLFRG---------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
            N  +Q    +G         +     +  V    +  + R  G+    + H  RH+F T
Sbjct: 305 RNGGMQSVKEKGESETMTDCLVFPHDCSRSVMAAKLSIVGRACGIRERLSYHMARHTFGT 364

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
             LS G  + SI  ++GH  +++TQIY  V      + M  +  +      QK+K
Sbjct: 365 MSLSAGIPIESIAKMMGHASIASTQIYAQVTDNKISEDMDRLIRKY-----QKEK 414


>gi|331266363|ref|YP_004325993.1| integrase/recombinase, phage integrase family protein
           [Streptococcus oralis Uo5]
 gi|326683035|emb|CBZ00652.1| integrase/recombinase, phage integrase family protein
           [Streptococcus oralis Uo5]
          Length = 356

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 116/326 (35%), Gaps = 51/326 (15%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEE------KITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  +  +F  ++             I +  +  +S  ++ +FI   R     
Sbjct: 33  YSFTTLYEYLKEYDRFFSWVLESGISNADKMVDIPLSVLENMSKKDMESFILYLRERPLL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKR--------------------KITTESNIL 114
                 Q +   ++ R+LS + S  KYL +                     K   E+   
Sbjct: 93  NANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAA 152

Query: 115 NMRNLKKSNSLPR----ALN--EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
              N+K+   L       L   +++    + N  L + ++ K    R+ AI+ LL   G+
Sbjct: 153 RAENIKQKLFLGDETEGFLTYIDQEYPQQLSNRALSSFNKNK---ERDLAIIALLLASGV 209

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQL 227
           R+SEA++L  +++      + +  KG K   V +    +  +  Y  +            
Sbjct: 210 RLSEAVNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKSYLENYLAIRNQRYKTEKTDT 269

Query: 228 PLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
            LF  +       ++    ++ + +        +  T H LRH+ AT L         + 
Sbjct: 270 ALFLTLYRGVPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVS 327

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWM 310
             LGH     T +YT++ +    + +
Sbjct: 328 HQLGHASTQVTDLYTHIVNDEQKNAL 353


>gi|326789825|ref|YP_004307646.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326540589|gb|ADZ82448.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 376

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 60/318 (18%), Positives = 120/318 (37%), Gaps = 42/318 (13%)

Query: 23  QNLEIERGLSKLTLQSYECDTR-QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           Q +++    S  T++ Y+       L F           + +  +    I+ F++     
Sbjct: 66  QYVKVNCKYS--TVEFYKNTYNTHLLPFFGD--------KKLSSIKPLHIQQFVTHLSEL 115

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA--LNEKQALTLVD 139
            +   ++  +LS +K   +   K ++  ++  + +   +K     R   +   +   L++
Sbjct: 116 DLAPSTVSNNLSCLKKTFEMAVKWELIIKNPCMYVDRPQKRKYQNRGQLMTVDEMKKLLE 175

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK--- 196
                  + +      +    Y+  GCGLR SE  +LT  +I  + + +R+  +  K   
Sbjct: 176 IY----ENLSTKPSHMHKCAFYIALGCGLRNSEIRALTLDDIDFENNIIRVNKQFGKYTE 231

Query: 197 ----------------IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLN 239
                           IR +     V  AI  Y         + +   LF   R  KP+ 
Sbjct: 232 KGKVVEGYITTKSESSIRDIYAPDFVIAAIKNYISTLDC---IPLSKQLFWSARTNKPVG 288

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                 +   + +   LP+    H LRH  AT L S G +++S+ + +GH +L TT IY 
Sbjct: 289 RQCLSTFFTNILKNNNLPV-IDFHDLRHLHATLLASKGVNMKSLSNRMGHSKLETTNIYM 347

Query: 300 NVNSKNGGDWMMEIYDQT 317
              ++     + ++ D T
Sbjct: 348 QPINE-VDKQVAKVLDNT 364


>gi|210634723|ref|ZP_03298251.1| hypothetical protein COLSTE_02176 [Collinsella stercoris DSM 13279]
 gi|210158663|gb|EEA89634.1| hypothetical protein COLSTE_02176 [Collinsella stercoris DSM 13279]
          Length = 391

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/312 (16%), Positives = 108/312 (34%), Gaps = 24/312 (7%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           S  L     +++Q L    G S  ++++Y   TR    FL       +++    +     
Sbjct: 62  SARLTDLLADYVQ-LRERNGASPNSIRNYRLFTRYVARFLKTANARDLSVMDFNRFEQAL 120

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +         Q +   S+      ++    +    +I   + ++ +            + 
Sbjct: 121 LTP--KAEGGQGLCKNSVLNVHHFLRGAYNHFVDAEICEANPLVFVAKPSPERHEASVIV 178

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAI----LYLLYGCGLRISEALSLTPQNIMDDQS 186
           E     L + +    +           A+     +L    G+R+ E  +++  ++   Q 
Sbjct: 179 EWDFEFLNEKLETAMNVTDPSTADYRRAVYAFAAWLALVTGMRVGEVCAVSRSDVKRYQM 238

Query: 187 TLRIQG----------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
            L + G                KG K R + +       I  +       L         
Sbjct: 239 FLHVGGTVIEEPGRKPYRRNVTKGRKCRNIAVTAEDIAVIDSFIRTQNAVLGRLDADAPL 298

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             + G  +      R   ++R   GL    T H+LRH+ A+ L++NG D++++   +GH 
Sbjct: 299 VTLDGSYMRTRTVSRAFSRIRDSCGLSREITFHSLRHTHASWLIANGCDIKTLSERMGHA 358

Query: 291 RLSTT-QIYTNV 301
             +TT +IY ++
Sbjct: 359 DEATTLRIYGHL 370


>gi|262282304|ref|ZP_06060072.1| tyrosine recombinase xerC [Streptococcus sp. 2_1_36FAA]
 gi|262261595|gb|EEY80293.1| tyrosine recombinase xerC [Streptococcus sp. 2_1_36FAA]
          Length = 356

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 110/326 (33%), Gaps = 45/326 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  +  +F  ++            +I +  +  ++  ++ AF+   R +   
Sbjct: 33  YSFTTLYEYLKEYDRFFNWVLESDITNASHIAEIPLSVLENMTKKDMEAFVLYLRERPLL 92

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                   +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 93  NANTTQNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATKKKKETLAA 152

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA--------RNSAILYLLYGCGLRIS 171
           +  N   +     +    +  +      +              R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETEEFLQYIDTEYPKKLSNRALSSFNKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLF 230
           EA++L  ++I      + +  KG K   V +    +  + +Y  +              F
Sbjct: 213 EAVNLDLKDINLKMMVIEVTRKGGKRDSVNVAAFAKPYLEDYLSIRSKRYKAEKTDTAFF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +        +  T H LRH+ AT L         +   L
Sbjct: 273 LTEYRGIPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH     T +YT++ +    + + ++
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNALDKL 356


>gi|254283555|ref|ZP_04958523.1| hypothetical protein NOR51B_2055 [gamma proteobacterium NOR51-B]
 gi|219679758|gb|EED36107.1| hypothetical protein NOR51B_2055 [gamma proteobacterium NOR51-B]
          Length = 391

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 57/271 (21%), Positives = 105/271 (38%), Gaps = 18/271 (6%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
           +   +            +     I ++S  E++ F ++ R   I   +    L  ++  L
Sbjct: 120 KRTWKNDADMHRLRLGPRFGATPINRISRQEVQQFHNELRESGIAPATADHHLKLLRHAL 179

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
                  +   +    ++     N + R L+E +   L+  +  H +           A+
Sbjct: 180 NLAVDWGLLQANPAARVKQFNVFNEVERYLSEVELRRLLAVLKSHENRPVSC------AV 233

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDL 216
           L+LL   G R+ E L+    +I        +     K  K+R +PL       + E   L
Sbjct: 234 LWLL-CTGSRVGEMLAAEWPDIDRGNRVWVVHATNSKSKKLRSIPLNDVALGVLDELQTL 292

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
             +  +      LF G RG PL  G   +    +R   GL  + T H LRHS A+ L+++
Sbjct: 293 PRYQPDGR----LFIGKRG-PL--GTINKVWYGIRDAAGLE-NFTLHCLRHSHASLLVNS 344

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           G  L  +Q +LGH     T  Y++++ ++  
Sbjct: 345 GHSLYEVQRVLGHSDPKVTMRYSHLSQESLQ 375


>gi|220918789|ref|YP_002494093.1| integrase family protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956643|gb|ACL67027.1| integrase family protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 392

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/314 (17%), Positives = 121/314 (38%), Gaps = 36/314 (11%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E     L +  + ++++    R  +  T+ + E   R  L+ +       +  + + +++
Sbjct: 82  EARVPTLAEFEKQFIEHARANRQKAS-TVYAKESILRVHLVPV-------LGTKRLDEIT 133

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
             +++A        +   +++   L+ +   L+  K+  +     + +   +K   +   
Sbjct: 134 EADVQALKVTLAEHR--PKTVNNVLATLSKLLRVAKRLGVIDAVPVESFELVKAPLAAVP 191

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
               ++   LV           + +D R  A + L    GLR  E ++L   ++    + 
Sbjct: 192 FYTFEEYAVLVAA--------ARRLDPRILAAVLLGGNAGLRAGEVVALELPDVRRANAR 243

Query: 188 LRIQG----------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
           + I+           KG K R+VP+  +++ A+     L    + +              
Sbjct: 244 ITIERQAWRGVVDTPKGGKGRVVPMTDALKAALAAVRHLRGARVLVQDDG--------SD 295

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L   V + +++  +R  GL  +   H LRH+F +HL   G   + IQ + GH  LSTT  
Sbjct: 296 LTAKVLRGWMKSAQRLAGLRPTGNFHILRHTFCSHLAMRGAPAKVIQELAGHTHLSTTMR 355

Query: 298 YTNVNSKNGGDWMM 311
           Y ++   +    + 
Sbjct: 356 YMHLAEGHKEQAIR 369


>gi|330817073|ref|YP_004360778.1| integrase family protein [Burkholderia gladioli BSR3]
 gi|327369466|gb|AEA60822.1| integrase family protein [Burkholderia gladioli BSR3]
          Length = 578

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 71/336 (21%), Positives = 120/336 (35%), Gaps = 38/336 (11%)

Query: 8   EIVSFELLKERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           E       KE +  +    +ERG  LS LT +    D   +  FL      +     IR 
Sbjct: 248 EATRRTYRKEAERLILWAIVERGRALSSLTTE----DALAYRAFLRRPAPAERWTGPIRP 303

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSN 123
               + R F     T  +  RS   +LS + +  ++L +++    +    + +R   ++ 
Sbjct: 304 RRAADWRPF-----TGALSARSAAHALSVLGALFRWLVEQRYLLANPFSGVKVRGGTRAA 358

Query: 124 SL--PRALN--EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           +L   R  +  E Q L  + + L  +         R   +L   Y  GLR SE + L   
Sbjct: 359 ALDSSRVFSDGEWQILRAIADGLEWSLGWEPAAAQRLRFLLDFSYATGLRASELVGLRLG 418

Query: 180 NIMDD---QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR----- 231
            I  D      + + GKG K   V L P   +A+  Y              P        
Sbjct: 419 AIRSDAREDRWIHLVGKGGKAARVALPPLAWQALTRYALERGLSAVPTQWRPDLPVIGGL 478

Query: 232 ---------GIRGKPLNPGVFQRYIRQLRRY----LGLPLSTTAHTLRHSFATHLLSNGG 278
                    G+R   +    F +    L              + H +RH+ ATH L+ G 
Sbjct: 479 GEDGAAGIGGVRLWKVLKRFFGQVADMLAAEHPPLADKLRRASPHWMRHTHATHALARGA 538

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           +L +++  L H  +STT IY + +       + + +
Sbjct: 539 ELTTVRDNLRHASISTTSIYLHGDEMKRARQLADAF 574


>gi|319947054|ref|ZP_08021288.1| phage integrase family integrase/recombinase [Streptococcus
           australis ATCC 700641]
 gi|319747102|gb|EFV99361.1| phage integrase family integrase/recombinase [Streptococcus
           australis ATCC 700641]
          Length = 356

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/323 (16%), Positives = 111/323 (34%), Gaps = 45/323 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  +  +F  ++         T   I ++ +  ++  ++ +FI   R +   
Sbjct: 33  YSFTTLYEYLKEYDRFFTWVLESGISDADTMANIPLEVLEHMTKKDMESFILYLRERPLL 92

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                   +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 93  NANTTKNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATKKKKETLAA 152

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA--------RNSAILYLLYGCGLRIS 171
           +  N   +     +    ++ +                     R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETEGFLNYIDQEYPQTLSNRALSSFNKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLF 230
           EA++L  +++      + +  KG K   V +    +  + +Y  +             LF
Sbjct: 213 EAVNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLEQYLAIRDKRYKTEKTDTALF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
             +       ++    ++ + +        +  T H LRH+ AT L         +   L
Sbjct: 273 LTLYRGVPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH     T +YT++ +    + +
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNAL 353


>gi|150009561|ref|YP_001304304.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
 gi|149937985|gb|ABR44682.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
          Length = 387

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/312 (17%), Positives = 115/312 (36%), Gaps = 42/312 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS- 76
            ++++++    +G S  T Q+        +  L       I I  + +    +   ++  
Sbjct: 97  LRDYIRSFAETKGKS--TQQN----LNSLVYHLERSKGTDIQIGKVDKYYIMDFIEYLED 150

Query: 77  -------KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS--NSLPR 127
                  + + +K+   S       +K  L       I   + IL+++   +      P+
Sbjct: 151 AQIEHTQRNKGRKLSKNSQAMYFKCLKMVLDEAVSDDIIPLNPILSIKKKYRPSAEKAPK 210

Query: 128 --ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
              L E +           T H  + +  + + ++  L   GLR  +   +   NI   +
Sbjct: 211 REFLTEDELRRF-----AGTDHPNELL--KRAFMIGCL--TGLRHCDIKQMKWSNIGVVK 261

Query: 186 STLR----IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
           + +     +Q K +    +PL  ++RK + E  +    DL  +  + L R     P    
Sbjct: 262 NGIECISLVQEKTNDPVDIPLNENIRKWLPEQGNASMEDLVFSGLITLGRSNEILP---- 317

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                  +     G+    T H  RH+FA   ++   D+ ++  +LGH  ++ T+IYT V
Sbjct: 318 -------KWAEKAGINKHLTFHCSRHTFAVLAIAKKVDIYTVSKLLGHQSITVTEIYTEV 370

Query: 302 NSKNGGDWMMEI 313
              +  + M  I
Sbjct: 371 LDNSKKEAMEAI 382


>gi|304384469|ref|ZP_07366869.1| integrase [Prevotella marshii DSM 16973]
 gi|304334441|gb|EFM00734.1| integrase [Prevotella marshii DSM 16973]
          Length = 306

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 101/295 (34%), Gaps = 20/295 (6%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97
           +Y+       +   F  ++ +T   I  +       +    + + +   ++ R L  +  
Sbjct: 19  TYQNLLYSDKLLTEFVKDKGMTDIVIATIPEDLFEEYRFYLKKRGLATATMNRYLCWLSR 78

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
            +     +++   +   N +  K    + R L +     L+   ++    E         
Sbjct: 79  LMYRAVSQRLIRCNPFENAKYEKAEQKI-RFLQKSDVAKLMALRVIDKEAEQA------R 131

Query: 158 AILYLLYGCGLRISEALSLTPQNIM---DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213
            +       GL I++   L   +I    D Q  +R  + K     IVPL P     I + 
Sbjct: 132 RMFIFSCFTGLAIADMEHLQFGHIQTAADGQKYIRKERQKTKVEFIVPLHPIAEAIINQC 191

Query: 214 YDLC-----PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            D          +       +F        +  V    +  + +  G+    + H  RH+
Sbjct: 192 KDERPSTKEMQTVKEKGDDFIF----HCACSRSVMSAKLSIVGKACGIRERLSYHMARHT 247

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
           F T  LS G  + SI  ++GH  +S+TQIY  V      + M  +  +     T+
Sbjct: 248 FGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDNKISEDMDRLIRKHQKEETK 302


>gi|262383463|ref|ZP_06076599.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262294361|gb|EEY82293.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 420

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 101/260 (38%), Gaps = 19/260 (7%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           + I+++ +  +    +RA +   +   I   +     S +K+ LK     +  T      
Sbjct: 173 KAISVKLLEDIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEYLTVDISAK 232

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           ++ +        AL   +   LVD         T   D             GLR S+  +
Sbjct: 233 VKGITNIEKPRVALTMNEVQMLVD---------TPCKDDVLKRAFLFSILTGLRHSDIQT 283

Query: 176 LTPQN-IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           L  +      + T +      K +     P +++A+         + + N +  +F G+ 
Sbjct: 284 LKWKQIQQTSKGTWQAVVIQQKTKRPDYKPVIQQALQ-----LCGERSSNDEALVFEGLT 338

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
               +     R ++      G+    T H  RHS+A+ LL NG D+ +I+S++GH  + T
Sbjct: 339 ----DASWISRPLKVWIEASGIKKHITFHVARHSYASLLLENGVDIYTIKSLMGHTNVKT 394

Query: 295 TQIYTNVNSKNGGDWMMEIY 314
           TQIYT++ ++        +Y
Sbjct: 395 TQIYTHIVNEQKEKAANTLY 414


>gi|255008616|ref|ZP_05280742.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313146347|ref|ZP_07808540.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313135114|gb|EFR52474.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 409

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 114/277 (41%), Gaps = 24/277 (8%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
                +F+     Y  + +    + +L   + +AF ++   +     +++  L+ +K   
Sbjct: 141 RLTLGEFIRH--RYKVKDLAFGQLTELFIHDYQAFATE--EKGYAIDTVRHHLAILKKIC 196

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           +   K+  + + +  +    K+S   PRAL+ +    + D  +       +        +
Sbjct: 197 RLAYKKGYSEKCHFQHFALPKQSERTPRALSRESFEKIRDVEIPAY----RKSHMLARDL 252

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
                  G+  ++A+S+T +N+  D +    L+ + K ++ R    L     A+LE Y  
Sbjct: 253 FLFACYTGVSYADAVSITDENLYTDDNGALWLKYRRKKNEHRASVKLLPEALALLEKYKD 312

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LS 275
              +        LF  +R   L     +R+++ L     +      H  RHSFA+ + L 
Sbjct: 313 KTRET-------LFPLLRWSNL-----RRHMKALAALADIKDDLCYHQARHSFASLITLE 360

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G  + +I  +LGH  +STTQ+Y  V+ K   + M +
Sbjct: 361 AGVPIETISRMLGHSDISTTQVYARVSPKKLFEDMDK 397


>gi|148985767|ref|ZP_01818895.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP3-BS71]
 gi|147922071|gb|EDK73194.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP3-BS71]
 gi|301800098|emb|CBW32699.1| tyrosine recombinase XerC [Streptococcus pneumoniae OXC141]
          Length = 356

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 116/326 (35%), Gaps = 51/326 (15%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  +  +F  ++             I +  +  +S  ++ +FI   R     
Sbjct: 33  YSFTTLYEYLKEYDRFFSWVLKSGISNADKISDIPLSVLENMSKKDMESFILYLRERPLL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKR--------------------KITTESNIL 114
                 Q +   ++ R+LS + S  KYL +                     K   E+   
Sbjct: 93  NANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAA 152

Query: 115 NMRNLKKSNSLPR----ALN--EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
              N+K+   L       L   +++    + N  L + ++ K    R+ AI+ LL   G+
Sbjct: 153 RAENIKQKLFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNK---ERDLAIIALLLASGI 209

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQL 227
           R+SEA++L  +++      + +  KG K   V +    +  +  Y  +            
Sbjct: 210 RLSEAVNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKTDT 269

Query: 228 PLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
            LF  +       ++    ++ + +        +  T H LRH+ AT L         + 
Sbjct: 270 ALFLTLYRGVPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVS 327

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWM 310
             LGH     T +YT++ S    + +
Sbjct: 328 HQLGHSSTQVTDLYTHIVSDEQKNAL 353


>gi|330877642|gb|EGH11791.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 321

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 63/295 (21%), Positives = 120/295 (40%), Gaps = 18/295 (6%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            ++ K  + +L  L      S+LT+     D    L          I       L    +
Sbjct: 20  PDVNKPLRLYLDRLAPS---SRLTMTYVLQDAADRLGMADV----DIHDIPWHTLQPGHV 72

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRAL 129
            A ++  R       +    ++ I+  +    ++ + +   +L +R++K      L +  
Sbjct: 73  TALVATLREDDYAPNTTSLYVNAIRGVMNEAWRQDLISHDQLLKIRSIKPVSGTRLAKGR 132

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           N +   TL+  ++   + + +    R++AI+ +LYG G+R SE+++L    I   + +LR
Sbjct: 133 NIR--RTLIRELMEACAADPRPQGRRDAAIIAILYGSGMRKSESVNLDLAQIDFAERSLR 190

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNP-GVFQR 245
           + GKG+K  I        KA+ ++ +L    L       LF   R  RG  +    + + 
Sbjct: 191 VMGKGNKQLIKYAPEWAFKALNDWLELRRSCLQPGQGDDLFLFNRIRRGSHITRDRITKH 250

Query: 246 YIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            I  + +  G  + +    H  R SF T ++    DL   Q +  H  +STT  Y
Sbjct: 251 AIYFIAKQRGRQVGVDIMPHDFRRSFITRVIEE-FDLSIAQKLAHHTHISTTASY 304


>gi|331701463|ref|YP_004398422.1| integrase family protein [Lactobacillus buchneri NRRL B-30929]
 gi|329128806|gb|AEB73359.1| integrase family protein [Lactobacillus buchneri NRRL B-30929]
          Length = 365

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/329 (17%), Positives = 124/329 (37%), Gaps = 45/329 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-- 82
           LS  TL  Y  +  +F  ++         T ++I +  +      ++  + S    +   
Sbjct: 33  LSPATLYQYLNEFYRFFTWMIDVGITDVKTVKEIPLSALEHFKKQDMELYKSYLLNRGKQ 92

Query: 83  --------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-PRALNEKQ 133
                   I  R++ RSL+ + +  +YL +   T +      RN+ K  +L P +   + 
Sbjct: 93  TASHPQAPISHRTVNRSLNALSALFRYLSEENETADGEPYFYRNVMKKIALVPDSETYQT 152

Query: 134 ALTLVDNVLLHTSHETKWID-----------------------ARNSAILYLLYGCGLRI 170
               + + L+    + K+I+                        R+ AI  L+ G G+R+
Sbjct: 153 RANNIKDQLMLGDADVKYIEFIQNDYPKTLTNKRTLSLYQRDRERDVAINALMLGTGIRV 212

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPL 229
           SE  +    ++   ++ + ++ KG K   VP+   V   +  Y ++     L       L
Sbjct: 213 SELTNANVSDLNLSKAAIVVRRKGGKYDSVPIASWVLPYLATYLNVRKQRYLATKTTPAL 272

Query: 230 FRGI---RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           F      + + ++    +  + +  +     +  T H LRH+ A+ L     +   + + 
Sbjct: 273 FLTKGASQPRRISTATVELLVAKYSQVFN-HVRITPHKLRHTLASKLYLETNNEHLVATQ 331

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           LG    + T +YT++        + +++ 
Sbjct: 332 LGQSSTNATGLYTHIIDTKQRQALDKLHR 360


>gi|26248739|ref|NP_754779.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli CFT073]
 gi|26109145|gb|AAN81347.1|AE016764_29 Type 1 fimbriae Regulatory protein fimB [Escherichia coli CFT073]
 gi|307554410|gb|ADN47185.1| type 1 fimbriae regulatory protein [Escherichia coli ABU 83972]
          Length = 209

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/176 (28%), Positives = 73/176 (41%), Gaps = 9/176 (5%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L   +   L+ +V      + K   +R+  ++ L Y  GLR+SE LSL   ++     
Sbjct: 5   KFLTHHEINLLLQSV------KQKSCSSRDVCMILLAYFHGLRVSELLSLQLSDLELTTE 58

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVF 243
            + IQ  K     + PL      AI  + +        + N    LF    GKPL+   F
Sbjct: 59  KIYIQRIKNGFSTVHPLQKEEVIAITNWLNERNSLNVKHFNDNPWLFVSRTGKPLSRQRF 118

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
              +    +  GL +    H LRH+    L  NG D R IQ  LGH  +  T IYT
Sbjct: 119 YNIVSAAGKNAGLNIKVHPHMLRHACGYSLADNGVDTRLIQDYLGHRNIRHTVIYT 174


>gi|167038625|ref|YP_001666203.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320117017|ref|YP_004187176.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166857459|gb|ABY95867.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319930108|gb|ADV80793.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 372

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 60/335 (17%), Positives = 125/335 (37%), Gaps = 42/335 (12%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           E N L E+ +  L +    W +    E  L+  TL+SY+         +  Y +  +   
Sbjct: 52  EKNEL-ELTNLTLGQFLNKWYET-HCELKLAPKTLKSYK-------ELIELYFKPYLGDI 102

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            + +L    I+ + +K +   + D ++      +KS LK     ++ +++    +   KK
Sbjct: 103 ELTKLKPVMIQNYYNKLKELGLSDTTINYHHRVLKSALKKAVVWQLISKNPCDYVEPPKK 162

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           +       NE    ++ D        +   I         L    G+RI E   L  ++I
Sbjct: 163 NK------NEITVWSINDVKKAKEIFKDTPIYLH----FMLALYTGMRIGEICGLKWEDI 212

Query: 182 MDDQSTLRIQGKGDK---------------IRIVPLLPSVRKAI-------LEYYDLCPF 219
             +  T  ++ +  +               IR++PL   V + +       L+   L   
Sbjct: 213 DFNNKTCTVKRQYQQVGGKEIIKEPKSETSIRVIPLHSDVIEVLKEEKKKQLQNRMLLGE 272

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
             N   +  +     G+   P    +   ++ +          H LRHS A+ L+  G  
Sbjct: 273 KYNKKYEGYISVWEDGRMKTPEYVSKKFSKILKAYPELPQIRFHDLRHSCASFLVQAGVP 332

Query: 280 LRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
           ++ +  ILGH ++  T  +Y++V   +  + + ++
Sbjct: 333 MKVVSEILGHSQIGITMDLYSHVLLDSKKEAIKKL 367


>gi|253570202|ref|ZP_04847611.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840583|gb|EES68665.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 409

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 61/292 (20%), Positives = 122/292 (41%), Gaps = 25/292 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K T  +Y+   R    F+   +  + +    + +    +   FI     +     +++ 
Sbjct: 130 AKGTYPAYDFTCRTMREFIETKFKTKDLAFGQLTEQFIHDYENFI--LDEKGYAVDTVRH 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L+ +K   K   +   +      +    K++   P+AL  +    + D  +    H T 
Sbjct: 188 YLAILKKTCKRAYQEGHSERFMFQHYVLPKQTVKTPKALCRESFEKIRDVEI--APHRTT 245

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRIQGKGDKIR-IVPLLPSV 206
              AR+  +       G+  S+A+++T +N+    D +  L+ + K +++R  V LLP  
Sbjct: 246 HRLARD--LFLFACYTGVAYSDAVTVTRENLYTGEDGKLWLKYRRKKNELRASVKLLPEA 303

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              I +Y+D        + +  LF  I    +     + +++ L    G+  +   H  R
Sbjct: 304 VALIEKYHD--------DSRDTLFPMIHYPSM-----RNHMKALAVLAGIKENLCYHVGR 350

Query: 267 HSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           HSFA+ + L  G  + +I S+LGH  + TTQ+Y  V  K   + M  + + T
Sbjct: 351 HSFASLVTLEAGVPIETISSMLGHSNIQTTQVYARVTPKKLFEDMDRLIEAT 402


>gi|325299288|ref|YP_004259205.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324318841|gb|ADY36732.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 409

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 57/287 (19%), Positives = 116/287 (40%), Gaps = 25/287 (8%)

Query: 32  SKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K ++ +Y    R    F+   +    +    + +    E + +I   + + +   + + 
Sbjct: 130 AKSSMSTYIYTRRYLGEFIQKRFKTSDVAFGQLNEHIPWEFQDYI--LKDKGLAVDTARH 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L+ +K   +   K     +   +N +  +++   PRAL+ +    + D V+       +
Sbjct: 188 YLAILKKICRMAFKEGHAEKRYFVNFKLPQENRKPPRALSREDFEKIRDVVI----PPER 243

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRI---QGKGDKIRIVPLLPSV 206
                   +       G+  ++A+S+T  N   DD+  L +   + K + +  V LLP  
Sbjct: 244 ITHNIARDLFLFACYTGVPYADAVSITRDNIYKDDKGDLWLKYLRKKNEYLARVKLLPEA 303

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              I +Y          N +  LF  I    +     +R+++ LR   G+      H  R
Sbjct: 304 IALIEKY--------RSNDRKELFPMIHHPNM-----RRHMKGLRDLAGISCDLVYHMGR 350

Query: 267 HSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           H+F + + L  G  + +I  +LGH  L+TTQ+Y  V  K   + M +
Sbjct: 351 HTFGSLITLEAGVPIETISKMLGHTNLTTTQLYARVTPKKLFEDMDK 397


>gi|257879448|ref|ZP_05659101.1| site-specific recombinase [Enterococcus faecium 1,230,933]
 gi|323142571|ref|ZP_08077387.1| site-specific recombinase, phage integrase family
           [Phascolarctobacterium sp. YIT 12067]
 gi|257813676|gb|EEV42434.1| site-specific recombinase [Enterococcus faecium 1,230,933]
 gi|322413004|gb|EFY03907.1| site-specific recombinase, phage integrase family
           [Phascolarctobacterium sp. YIT 12067]
          Length = 378

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/331 (16%), Positives = 126/331 (38%), Gaps = 41/331 (12%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           PEI S +  +    W Q +  +  + + T   Y      +++ +          + +R +
Sbjct: 62  PEISSDQFEQVAMEWFQAICPK--VKESTSNKYRNLLSSYILPV-------FGSKQLRDI 112

Query: 67  SYTEIRA----FISK--RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           ++  I      F+     +   +  +++   LS I++ L++  +       +  +++ +K
Sbjct: 113 THEFIETQCNFFLVSGGLKENGLSSKTVSDILSLIRNVLQFATRNGKAISCDARSIQ-IK 171

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +     R L+  +   L   +  +       +D+ N  IL  L+  GLR+ E  +L  ++
Sbjct: 172 RQTKEMRVLSRAEQEKLCQYLYSN-------LDSCNIGILVCLF-TGLRVGEICALRWED 223

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL---------------EYYDLCPFDLNLNI 225
           +     T+ +     +I+         + ++                           + 
Sbjct: 224 VSFSDYTIHVHQTLQRIQDRTNSEYKTRIVVTTPKSACSIRTIPVPHGLMTILTAHKASS 283

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
              +       PL P   Q + +++ +  G+  S   H+LRH+FAT  +  G D++S+  
Sbjct: 284 TGYILTNSDQNPLEPRTMQNHFKKVLKNSGIT-SANYHSLRHTFATRCIELGFDVKSLSE 342

Query: 286 ILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYD 315
           ILGH  ++ T   Y + +     + M  + D
Sbjct: 343 ILGHASVNITMNRYVHPSMDLKRENMQRLSD 373


>gi|119944179|ref|YP_941859.1| phage integrase family protein [Psychromonas ingrahamii 37]
 gi|119862783|gb|ABM02260.1| phage integrase family protein [Psychromonas ingrahamii 37]
          Length = 337

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 57/322 (17%), Positives = 127/322 (39%), Gaps = 37/322 (11%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-------- 62
           SF+L KE Q ++  L ++  L+  +L ++   T  F   +    ++              
Sbjct: 29  SFKLKKEAQTFMALLLVDNDLA-NSLTNHILTTLNFSDAVKKLLDQDNGRDPSKHQRLRY 87

Query: 63  ---------IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI 113
                    + +++  +++A + +    K    +L R  + + S  +YL        + +
Sbjct: 88  WVSVFGSLKVGKVTRQQVKAELKRLSNDK-APATLNRYKAALGSLYRYLSDEFDIDYNPV 146

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
             +R   ++++  R L++++      ++L     ++KW       ++ +    G R SE 
Sbjct: 147 KGIRQYTENDARTRFLSDEEL-----SILFAMVKQSKWDQLF--LLVLMAITTGARRSEM 199

Query: 174 LSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
           L+L   +I     T  +   K  + RI+ L   V   +++Y  +  +         +F  
Sbjct: 200 LTLEWDDINFKTKTAHLPNTKNGEQRILTLTGDVITELMKYRCIGGY---------VFPH 250

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                +    F  + +   R   +      H LRH+ A+ L  NG  L  I  +LGH  +
Sbjct: 251 PDDPTIYFRNFDIHWQSALREGEIT-DFRFHDLRHTCASLLAMNGASLLEIAQVLGHKSI 309

Query: 293 STTQIYTNVNSKNGGDWMMEIY 314
           + TQ Y+++  ++       ++
Sbjct: 310 TMTQRYSHLCIEHKAKLTDRVF 331


>gi|322387855|ref|ZP_08061463.1| phage integrase family integrase/recombinase [Streptococcus
           infantis ATCC 700779]
 gi|321141357|gb|EFX36854.1| phage integrase family integrase/recombinase [Streptococcus
           infantis ATCC 700779]
          Length = 356

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/323 (16%), Positives = 110/323 (34%), Gaps = 45/323 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  +  +F  ++         T   I +  +  ++  ++ +FI   R +   
Sbjct: 33  YSFTTLYEYLKEYDRFFTWVLESGISDADTMANIPLDVLEHMTKKDMESFILYLRERPLL 92

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                   +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 93  NANTTKNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATKKKKETLAA 152

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA--------RNSAILYLLYGCGLRIS 171
           +  N   +     +    ++ +                     R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETEGFLNYIDREYPQTLSNRALSSFNKNKERDIAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLF 230
           EA++L  +++      + +  KG K   V +    +  + +Y  +             LF
Sbjct: 213 EAVNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLEQYLAIRDKRYKTEKTDTALF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
             +       ++    ++ + +        +  T H LRH+ AT L         +   L
Sbjct: 273 LTLYRGVPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH     T +YT++ +    + +
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNAL 353


>gi|251773301|gb|EES53851.1| phage integrase family protein [Leptospirillum ferrodiazotrophum]
          Length = 347

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/291 (17%), Positives = 99/291 (34%), Gaps = 23/291 (7%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           +SY  D    L  L  + +      T+ ++   +I  +  KRR + +   SL + ++ ++
Sbjct: 79  KSYIRDKAISLRMLKEFGD-----VTLIEIGTEQIFDYKKKRREENLAPASLNKEIAFLR 133

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
              +          + +  +   K  N + R L  ++   L+           K      
Sbjct: 134 HAFEMAVLWGWLEVNPVSRIPREKVKNRMERWLTGEEEERLL-----------KACPEWL 182

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILEYYD 215
             ++      G R +E LSLT   +  D+  +    + +  R   P+       +     
Sbjct: 183 RDMVIFALNTGFRQNEMLSLTWNQVDWDRKAILFWDQKNNGRDTVPVNEKAIDVLK---- 238

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
                +       +F    G P       R          +  +   H LRH+FAT L+ 
Sbjct: 239 -RIGKVKSLSSGHVFLTSNGTPFIARNVVRSFSLALEKAKIT-NFRWHDLRHTFATRLVH 296

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
            G DL ++Q +     LS    Y + N ++    M  +      ++ Q  K
Sbjct: 297 AGVDLYTVQRLGRWRSLSMVMRYAHHNLESLRTGMEAVNRLASTNLAQSGK 347


>gi|186473761|ref|YP_001861103.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184196093|gb|ACC74057.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 495

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/324 (21%), Positives = 110/324 (33%), Gaps = 43/324 (13%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK- 82
            L    G S  T + Y  + R+ + +             +  LS   +  +         
Sbjct: 171 FLRDRAGASVHTRRGYIAEIRRLVRWCQANDI----AGPLSGLSREHLVRYRDDLSNMGA 226

Query: 83  --------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM--RNLKKSNSLPRALNEK 132
                   +G+RS KR+L+ ++S L YL +    T +    +      +    P  +   
Sbjct: 227 RTPRASQVLGERSQKRALAVVRSVLSYLWRTGYLTANPGAGLGDTAAAREKFAPDRILPA 286

Query: 133 QALTLVDNVL-LHTSHETKWIDARNSA-ILYLLYGCGLRISEALSLTPQNIM------DD 184
            A+   D+ L    + E + I     A I+      G+R+ E       +        DD
Sbjct: 287 GAVHACDSWLRARLNPEGRPIAVMRRAAIVATYRFTGIRLDELA---WHDGYPRVVTGDD 343

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGV 242
             TL+++GKG + R VPL       + +Y   C           LPL RG R   L P  
Sbjct: 344 GWTLQVRGKGRRERAVPLPGPCVIFLQQYRQACGLPPTPPPRENLPLIRGQRHDALGPSG 403

Query: 243 FQRYIRQ-------------LRRYLGLPLSTTAHTLRHSFATHLL-SNGGDLRSIQSILG 288
             R +R                  L L    + H LRH     L+      L   Q +LG
Sbjct: 404 LYREVRAAFAEMAAAVPPTEATTRLALQ-EASPHWLRHLVGKTLVVDANVPLPVAQMLLG 462

Query: 289 HFRLSTTQIYTNVNSKNGGDWMME 312
           H  ++TT  Y   ++      M  
Sbjct: 463 HQSVATTAGYARADASQLRHVMQR 486


>gi|160889618|ref|ZP_02070621.1| hypothetical protein BACUNI_02044 [Bacteroides uniformis ATCC 8492]
 gi|156860610|gb|EDO54041.1| hypothetical protein BACUNI_02044 [Bacteroides uniformis ATCC 8492]
          Length = 379

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/264 (20%), Positives = 101/264 (38%), Gaps = 36/264 (13%)

Query: 63  IRQLSYTEIRAFISKRR---------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI 113
           +R++  T +  FI   +          + +   +    L  ++  L         T + +
Sbjct: 129 LRKVDKTYLLGFIDYLKKTKQEHCKKEKTLHVNTQFYYLKTLRYCLNRAVSEDYITVNPM 188

Query: 114 LNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
             ++N    K++ +    L  K+   LV        H   +      A L+  + CGLR 
Sbjct: 189 NKIKNEDKPKRNRTERDYLTIKELTRLV--------HTPFYNTLLRKAFLFSCF-CGLRH 239

Query: 171 SEALSLTPQNIMDDQSTL----RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
            + ++L  ++I  D++       IQ K  +   +PL     K +       P   N    
Sbjct: 240 CDIIALRWEDIRYDENGNALLSIIQKKTKEAISLPLCSEAIKHL-------PDRGNAPET 292

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
             +F G+    L        + +     G+    T HT RH+ AT +L+ G DL ++  +
Sbjct: 293 EKVFAGLVS--LGRSNV--ILHKWVEQAGISKHVTFHTARHTHATMMLTLGVDLYTVSKL 348

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWM 310
           LGH  + TTQIY  +  ++    +
Sbjct: 349 LGHTNIQTTQIYAKLVDESKKKAI 372


>gi|149198674|ref|ZP_01875717.1| integrase/recombinase XerD [Lentisphaera araneosa HTCC2155]
 gi|149138110|gb|EDM26520.1| integrase/recombinase XerD [Lentisphaera araneosa HTCC2155]
          Length = 394

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 111/306 (36%), Gaps = 21/306 (6%)

Query: 9   IVSFELLKERQNWLQNLEIERGLS--KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           ++S E +     W    + +R     K T+ SY+   ++F+ F+    +E I    + +L
Sbjct: 69  LISTERISLDDAWDLYFKSKRRRDSGKSTITSYKQHLQKFVRFVEAEYDELI---YLDEL 125

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           +      F+      K+   +  +  + +K +   + K    T++    + +        
Sbjct: 126 TPKVAEEFLESL---KVSPNTYNKYKNFLKLYFDTVSKDCGVTKNPFEGIISKSLKKESW 182

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R LN+ +   L           T +       ++ L    G+R+ +A  L   ++   + 
Sbjct: 183 RELNDDEVDKL-----------TSYPKGEVWVLMNLGIYTGMRLKDAALLKWADVDLKRE 231

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            +             +   +   + +          L+  L L         +       
Sbjct: 232 KIIFTPWKTAKSEKVVHVPILPELRKALQ-WVKQQKLSNDLVLPEMAASYQKSRTNLSSL 290

Query: 247 IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           ++++   L +       H+LRH+F +     G  +  +Q+I+GH   + T+ YT+++ ++
Sbjct: 291 VKRIFIDLKIRDGKVGFHSLRHTFVSTCAKAGVPMSVVQAIVGHGSPAMTRHYTHIDIES 350

Query: 306 GGDWMM 311
              W+ 
Sbjct: 351 ARKWLE 356


>gi|16329274|ref|NP_440002.1| integrase-recombinase protein [Synechocystis sp. PCC 6803]
 gi|34222774|sp|P72680|XERC_SYNY3 RecName: Full=Tyrosine recombinase xerC
 gi|1651754|dbj|BAA16682.1| integrase-recombinase protein [Synechocystis sp. PCC 6803]
          Length = 313

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/289 (20%), Positives = 105/289 (36%), Gaps = 17/289 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY----TEIRAF 74
           QN L+ L  ++  S  T ++Y    + F + +A        I     L +      +  +
Sbjct: 14  QNILEELLRDKR-SPNTRRTYAKALKDFFLTMAGEEPSPDVIAWFLSLDHFQAIAMVLRY 72

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
            ++   + +   ++   L+ IKS + Y ++      + + ++  LK         +    
Sbjct: 73  RAELLAKDLKPATINVRLAAIKSLVNYARRVGKCQYT-LEDVEGLKAET----YRDTTGV 127

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
                  +            R+ AI+ LL+   LR +E   L   +    +  L I+GKG
Sbjct: 128 SPTSFKQITDHITPDSLKGKRDLAIMRLLWDNALRRAEVCGLNVGDYQPTERQLLIKGKG 187

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF----RGIRGKPLNPGVFQRYIRQL 250
              +    L +   A++  +         N   PLF    R   G  L+       +R  
Sbjct: 188 KLGKQAITLSAKGMALINQWLTAIGPRPKNE--PLFCTLDRATFGHRLSGNAIYNLVRTS 245

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIY 298
               G+    + H +RHS  T  L    GD R +Q +  H  L+T  IY
Sbjct: 246 AESAGIHKVMSPHRVRHSAITAALEATNGDTRKVQKLSRHSNLNTLMIY 294


>gi|282859387|ref|ZP_06268495.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282587872|gb|EFB93069.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 431

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/264 (20%), Positives = 103/264 (39%), Gaps = 17/264 (6%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
                 F+ +   Y  E I +Q +  +   ++  + +K +  K+        L+ + S L
Sbjct: 181 RKHLANFVRY--SYHVEDIPVQKVDTVLIKDLEDYFAKEKRFKLNTS--AGYLTMLASLL 236

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           K L KR I      +N  +++     PR +  ++   +          + +  +  +  +
Sbjct: 237 KDLHKRHIIDTYPFIN-HSIRWEVGTPRYITREEVGRI----AALGEDKLQGYEKVSRDM 291

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDL 216
                  GL  ++   LT Q+I  +     I+    K   +  +PLLP     I  Y  +
Sbjct: 292 FLFSCLTGLSYTDVYHLTEQHIFHEAGMTWIRKPRMKTGNVCHIPLLPEAATIIERYRGI 351

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LS 275
                           I G          +++++ R  G+  + T H  RH+FA+ + LS
Sbjct: 352 HTRAFRHEPPKGYLLPIPGC----DTVNIHLKKIARLCGIQKTLTYHMARHTFASQMTLS 407

Query: 276 NGGDLRSIQSILGHFRLSTTQIYT 299
            G  + S+  +LGH ++ TTQ+Y 
Sbjct: 408 EGVSIESVSKMLGHSQIKTTQVYA 431


>gi|134288060|ref|YP_001110224.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134288180|ref|YP_001110343.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134291493|ref|YP_001115262.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134295747|ref|YP_001119482.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134132710|gb|ABO60336.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134132830|gb|ABO59540.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134134682|gb|ABO59007.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134138904|gb|ABO54647.1| phage integrase family protein [Burkholderia vietnamiensis G4]
          Length = 493

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/328 (17%), Positives = 113/328 (34%), Gaps = 41/328 (12%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR---- 79
            L      S  T ++Y  + R+   +   +      +  +  L+  ++  +         
Sbjct: 169 FLRDRASRSPHTARAYLTEIRRLAAWCIAHE-----LGPLSDLTRHDLLEYKRMLHRPSQ 223

Query: 80  --------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN---SLPRA 128
                     ++ + +  R+L+ + S  +Y  +    T +    +   ++ +   +  R 
Sbjct: 224 DVADDAQPEGRLSEATQARALAVVASLFQYWTETGYLTANPAAGLVRGQRRHAGFAPTRM 283

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR-----ISEALSLTPQNIMD 183
           L+  Q       V          I AR  AI  L    G+R      S+A  L   ++  
Sbjct: 284 LSAAQLGACDAEVDAVDRDVEPLIAARRRAIWSLYRFAGVRLVELAWSDARQLPVLDVDS 343

Query: 184 DQ-STLRIQGKGDKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNP 240
           +   TL + GKG K R +PL       +  Y  L   P     +  + L  G++G  L  
Sbjct: 344 NGCWTLHVCGKGQKPRAIPLPAGCVSRLQTYRRLRGLPEQPEPSEHVALVHGLKGGTLQS 403

Query: 241 GVFQRYIRQLRRYLGLP------------LSTTAHTLRHSFATHL-LSNGGDLRSIQSIL 287
                 ++ + R                    + H LRH++A  L +     L + Q++L
Sbjct: 404 SGLYDEVKAIFRAAAARLDPTDPPSAATLRRASPHWLRHAYARTLVVDRQVPLPAAQALL 463

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           GH  + TT  Y   +      ++   +D
Sbjct: 464 GHASIQTTAGYAKTDLSQLRAFVDRAFD 491


>gi|255038961|ref|YP_003089582.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254951717|gb|ACT96417.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 406

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/291 (21%), Positives = 112/291 (38%), Gaps = 24/291 (8%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLK 89
            +  TL+ YE   +    F+ +  +E      I++L Y  I  F    + +K I   +  
Sbjct: 130 FAPGTLERYETSLKHTRDFIKWNYQED--DLDIKKLDYEFISQFEFWLKAKKKISHNTTM 187

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           + L+  K  +    KR           +  K+         ++QALT  +   +      
Sbjct: 188 KYLANFKKIVLLCVKRGWLMRDPFFAFKFTKREV-------DRQALTESELKKVWEKDMG 240

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLT----PQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
               A    I       GL  ++   L      + I   +     + K D    +PLLP 
Sbjct: 241 TGRLAYVKDIFLFCCYTGLAYADVYKLKRTEIIEGIDGGKWITTKRQKTDTPSRIPLLPM 300

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
             + + +Y D    + N N  LP+        L+      Y++++    G+  + T H  
Sbjct: 301 ALEIMEKYEDHPQCE-NENRVLPV--------LSNQKMNSYLKEIADLCGVKKNITFHLA 351

Query: 266 RHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           RH+FAT + L+NG  + S+  +LGH  + TTQ Y  +  +   D M  + D
Sbjct: 352 RHTFATTVTLTNGVPIESVSKMLGHRNIKTTQQYAKIVDRKISDDMARLKD 402


>gi|119357861|ref|YP_912505.1| phage integrase family protein [Chlorobium phaeobacteroides DSM
           266]
 gi|119355210|gb|ABL66081.1| phage integrase family protein [Chlorobium phaeobacteroides DSM
           266]
          Length = 419

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 105/301 (34%), Gaps = 26/301 (8%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K   ++++     R  ++    +Y     ++   L       + +     L+   +  F 
Sbjct: 67  KAADDFIEFY---RRYAEK--DNY----PKYANVLPILRRFSLGVIHFASLNSAWLERFK 117

Query: 76  SKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
               + + I   +    L+ +K+ L+   +     E     +  +KK++     L  +Q 
Sbjct: 118 FYLLSLESISQNTAGGYLTSVKTVLRQAFREGYLIEDISAKVPGIKKTDIQRHFLPVEQV 177

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L         H+ K  +             GLR+S+  +L  + I        IQ + 
Sbjct: 178 EAL---------HKAKSNNEMIKQAFLFACFSGLRLSDVQALYWEQISQINGAPYIQFRQ 228

Query: 195 DKIRIVPLLPSVRKA--ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
            K      LP   +A  IL+       +   +    +F        +     + +     
Sbjct: 229 RKTCQYENLPLSEQAATILQEVRALHAEYAPSGSDKVFILP-----SRERIAQVLEVWGI 283

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GLP     H  RH+FAT  L+ G DL ++  +LGH  + TTQIY  +      D +  
Sbjct: 284 RAGLPFKLHFHVSRHTFATMNLTAGCDLYTVSKLLGHREIKTTQIYGRIVDSKKLDAVQA 343

Query: 313 I 313
           +
Sbjct: 344 L 344


>gi|260593520|ref|ZP_05858978.1| putative integrase [Prevotella veroralis F0319]
 gi|260534508|gb|EEX17125.1| putative integrase [Prevotella veroralis F0319]
          Length = 385

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 63/316 (19%), Positives = 118/316 (37%), Gaps = 28/316 (8%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           +   +P +   EL +    + + L+  R LSK T+++++   + F+ FL           
Sbjct: 48  QSRPMPTLT--ELYQSVCEYKEELQG-RTLSKATVRAFKDSYKSFVHFLQVRDRADCMPT 104

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            + +    + R F+   R  +  + S+   L  +   ++   + +   E     +     
Sbjct: 105 EVDKTLLEDYRLFM--LRDLENKESSVGNRLRHLHQVIRKALQERYVREDPFELID---- 158

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              +     E+ +LT+ D   L      +  D     I  L    GL  S+   L   ++
Sbjct: 159 ---IETPTYERNSLTVDDLQKLLAYRPHRSTDNHCRLIFLLGCFTGLAFSDLKKLRMDDV 215

Query: 182 M---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
               D +  + +     + R +  L  + + IL        +  L  + P          
Sbjct: 216 YTFGDGRRYISLCRTKTQNRSIVPLLPIAEEILTIVSDGRKEGLLFREFP---------- 265

Query: 239 NPGVFQRYIRQLRRYLGLPLS--TTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTT 295
               F R IR +    GLP      +HT RH+FAT   L NG  + ++  +LGH  +STT
Sbjct: 266 TNSHFNRKIRDIIIKAGLPPHTEANSHTARHTFATTICLENGLPIETVSKMLGHRFISTT 325

Query: 296 QIYTNVNSKNGGDWMM 311
           ++Y  V+       M 
Sbjct: 326 ELYAKVSKGKIAREMQ 341


>gi|291514360|emb|CBK63570.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 368

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 96/278 (34%), Gaps = 34/278 (12%)

Query: 46  FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-----RTQK--IGDRSLKRSLSGIKSF 98
            +  L  Y  +KI +Q I       ++ F+        RT    +   S     + +K  
Sbjct: 111 LVYHLTKYHGDKIALQDI---DIRYVKGFVQYLSTAIARTSGEVLKSSSQHNIYTSLKII 167

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           +    K ++ T     ++   +        L E++   L+         +T         
Sbjct: 168 IHQAIKDELVTSDPTKSVDPPRMVLPHKEHLTEEELKRLI---------QTPCPKEMVKR 218

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYD 215
                   GLRIS+   L  + ++   +   I   Q K      VPL  +    +    +
Sbjct: 219 SFLFCCFTGLRISDVQKLIWKEVVTTNNETYINFRQKKTKIENYVPLSENAISVLPSKRE 278

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
               D   ++                  ++ +++     G+    T H  RH+ AT LL+
Sbjct: 279 NTETDSVFDLPK------------ESTIRKVLKKWVSDSGIDKHITFHCARHTCATLLLN 326

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +G D+ +++ ILGH  + TT  Y  V  K   + +  I
Sbjct: 327 SGVDIYTVKEILGHTDIGTTMQYAKVVDKTKREAVNSI 364


>gi|163943320|ref|YP_001642550.1| integrase family protein [Bacillus weihenstephanensis KBAB4]
 gi|163865517|gb|ABY46575.1| integrase family protein [Bacillus weihenstephanensis KBAB4]
          Length = 390

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 66/307 (21%), Positives = 116/307 (37%), Gaps = 34/307 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEE--------KITIQTIRQLSYTEIRAFISKRRT 80
           +   + T +SY  +   F   +  + EE        +     ++ L    IR + S  + 
Sbjct: 81  KNRKEDTKKSYVSEILSFCQCMVQHAEEFELNGEEVQQNTSLLKTLQPWHIRKYNSWLKQ 140

Query: 81  -------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--NLKKSNSLPRALNE 131
                        +L +    I+SFLK+L       +     ++  N+ + +   R L+ 
Sbjct: 141 VENGRNGDTYAVATLAKKTVLIRSFLKHLHVFAYIEKPLHEELQRANVNEQDRPNRDLSY 200

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRI 190
            + + ++           +     N  IL  L   G RI E  +   ++   D +  L++
Sbjct: 201 DEVMKILGFY-------KERGHLVNYTILLALASTGARIQELCTTRVKDLHYDGKYWLKV 253

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            GKGDK+R + +   + + I E      F   L+   + PLF   RG   N       + 
Sbjct: 254 TGKGDKVRELFISEHLYQCICEMRRRRGFQTVLDRGDESPLFVNQRGNFYNSKTLSNQVT 313

Query: 249 QLRRYLGLPL------STTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTNV 301
            + +   L          TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   
Sbjct: 314 DMIKKTNLEFLQYRENPVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEK 373

Query: 302 NSKNGGD 308
           + K   +
Sbjct: 374 HMKRKNN 380


>gi|94310215|ref|YP_583425.1| phage integrase [Cupriavidus metallidurans CH34]
 gi|93354067|gb|ABF08156.1| tyrosine-based site-specific recombinase (recombinase triad in
           CMGI-2) [Cupriavidus metallidurans CH34]
          Length = 410

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 107/294 (36%), Gaps = 14/294 (4%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L  L  +RGL+K +L  Y    R FL   +      +            IR  +  
Sbjct: 114 YRRYLDYLRQDRGLAKNSLLVYGPFIRDFLDSHSAGDGSLL----PDAFDAVTIRNHLLA 169

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLPRALNEKQAL 135
            R++       +     ++SF  +L  R  T      ++ +++K    ++P  L  +Q  
Sbjct: 170 -RSKGRSAEYTRLMAVALRSFCHFLFLRGDTARDLAGSVPSVRKWRQSTVPTFLTPEQQE 228

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+      ++  +     R+ AIL LL   GLR  E + +   +I      L + GKG 
Sbjct: 229 ALI-----ASADRSTPTGLRDYAILLLLARLGLRAGEIIEIELDDIHWRSGELVVHGKGQ 283

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            +  VPL   V  AI  Y                    R     P    + + Q    +G
Sbjct: 284 MVEHVPLSSEVGAAIATYLRDGRGASASRRVFLRRLAPRVGLAGPAAIGKIVCQAFARVG 343

Query: 256 L--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                   AH  RH  AT ++ +G  +  I  +L H    +T IY  V  ++  
Sbjct: 344 FRPACRGAAHLFRHGLATTMIRHGASMAEIAEVLRHRSPDSTAIYAKVAFEDLR 397


>gi|326790035|ref|YP_004307856.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326540799|gb|ADZ82658.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 374

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/270 (17%), Positives = 103/270 (38%), Gaps = 29/270 (10%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           I   +I  ++  +I+ F + +     G   + R    I+   +Y KK  +  E+  + ++
Sbjct: 103 IGKTSITDINQIDIQNFFNSKNDMATGVLKIMRY--TIRRVFEYAKKHDVIRENPCIGIK 160

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
                    +A      +  +D         +      N A+       GLR+ E ++L 
Sbjct: 161 IPPS-----KAKTRDIIIMTLDEQEKFIEAASTR---DNKALFLTALFTGLRMGELIALK 212

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--------- 228
            +N+     T+ +     ++R         + I++       + N  + +P         
Sbjct: 213 WENVDLKNGTINVCESYKRVRAYTDNGD-SEYIIDKKAPKTKNGNRIVPIPTKLLPILKE 271

Query: 229 -------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
                  +F   +G+P+     +R  +++     +      H LRH++AT L+ NG D++
Sbjct: 272 IRTDNELVFCNAKGQPMTEITIRREQKRICEQAQI-RYINFHALRHTYATRLIENGIDVK 330

Query: 282 SIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           ++  ++GH  + TT  IY +       + +
Sbjct: 331 TVSMLVGHADIQTTLNIYVHSTDDTKKNAV 360


>gi|227517510|ref|ZP_03947559.1| integrase [Enterococcus faecalis TX0104]
 gi|227075030|gb|EEI12993.1| integrase [Enterococcus faecalis TX0104]
          Length = 424

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 110/294 (37%), Gaps = 34/294 (11%)

Query: 48  IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI 107
             +    ++++    I  +  ++ + +  + + + +  +++      +K+      +   
Sbjct: 135 RLMRILEQDRLGSCPIDSVKLSDAKEWALRMKEKGLSYKTINNDKRSLKAAFYTAIQDDC 194

Query: 108 TTESNI-LNMRNLKKSNSLPRA-LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
             ++     + ++   ++ P+  L   Q     +   L      K       AI+ LL G
Sbjct: 195 IRKNPFDFQLSDVLDDDTEPKVPLTPAQ-----EESFLSFIQGDKVYQKHYDAIVILL-G 248

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQG----------------KGDKIRIVPLLPSVRKA 209
            GLRISE   LT +++  +   + +                      +R +P+   V +A
Sbjct: 249 TGLRISELCGLTDKDLDFENRVIIVSHQLLRNTGVGYYIDEPKTQSGVRKIPMNEEVYQA 308

Query: 210 ILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNP----GVFQRYIRQLRR--YLGLPLST 260
                          I      LF    G P+      G+F R +++  +     LP +T
Sbjct: 309 FQRVIKNRKGAKPFIIDGYANFLFLKQNGYPMTAVDYGGMFGRLVKKYNKSHEEALPKTT 368

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           T H +RH+F T L + G + +++Q I+GH  ++ T   Y +    +    M  +
Sbjct: 369 TPHAMRHTFCTRLANAGMNPKALQYIMGHSNITMTLNYYAHATFDSARAEMERL 422


>gi|153005509|ref|YP_001379834.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5]
 gi|152029082|gb|ABS26850.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5]
          Length = 381

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/310 (17%), Positives = 119/310 (38%), Gaps = 40/310 (12%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T+ ++E   ++ L  L            + ++   +++    +   QK+  +S+   +
Sbjct: 96  PSTIATHERIWKKHLSSLGDRR--------LDEVDDAQVQLLKGRLSAQKLKPKSVNNVV 147

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           + +   LK   + ++        +R LK +  +     +++   LV             +
Sbjct: 148 TVLSKMLKVGVEWRVIEAMPC-RIRLLKSAKPVVEFYEDEELERLVSA--------AGKV 198

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----------KGDKIRIVPL 202
           D R    + L    GLR+ E L+L   ++   +  +++Q           KG K R+VP+
Sbjct: 199 DPRTHVAVLLGGDAGLRLGEILALEWSDLDFTRGLMKVQRSECDGAVTLPKGGKPRVVPM 258

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
              ++ A+  +  L         + P       +P+     +  I    R  GL      
Sbjct: 259 TARLKAALHAHRHL---------KGPRILYEGIEPITKWPLKWLIDVAERRAGLRQGGRV 309

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ----TH 318
           H LRH+F + L +    + +I+ + GH  + TT  Y ++++    + +  + DQ      
Sbjct: 310 HILRHTFCSRLAARNVPMLTIKGLAGHQSVETTMRYLHLSASAPVEGIRALEDQGTNRAQ 369

Query: 319 PSITQKDKKN 328
              ++K+  N
Sbjct: 370 NQASEKNSSN 379


>gi|170737066|ref|YP_001778326.1| integrase family protein [Burkholderia cenocepacia MC0-3]
 gi|169819254|gb|ACA93836.1| integrase family protein [Burkholderia cenocepacia MC0-3]
          Length = 563

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 65/326 (19%), Positives = 125/326 (38%), Gaps = 35/326 (10%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           KE +  +    +ERG +  +L +   D   +  FL   T  +  +   R    +E R F 
Sbjct: 241 KEAERLILWAIVERGRALSSLNT--DDAIAYRGFLRRPTPRERWVAPSRPRHSSEWRPF- 297

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS----LPRALNE 131
               T  +  RS   +L+ + +  ++L +++    +    ++    +      + R  +E
Sbjct: 298 ----TGPLSARSAAYALNVVSALFRWLVEQRYVLANPFAGVKVKSHAQRTGLDVSRGFSE 353

Query: 132 KQALTL--VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--- 186
            + L +  + + L  +   +     R   +L   Y  GLR SE +     +I  D+    
Sbjct: 354 GEWLLIRTLADGLEWSYGWSAPAAQRLRFLLDFGYATGLRASELVGAMLGDIRRDEHGDH 413

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR----------GIRGK 236
            L ++GKG K+  V +    R A+ +Y       +      P             GI  +
Sbjct: 414 WLHVRGKGGKLGKVAMPSLARTALDQYLVQRGLPIAPARWNPATPIIASLEADGTGIEPR 473

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTT--------AHTLRHSFATHLLSNGGDLRSIQSILG 288
            L+  V  R+   +   +     TT         H +RH+ A+H L+ G +L  ++  L 
Sbjct: 474 RLSR-VLHRFFVLIADAIQDERPTTAEKLRRASPHWMRHTHASHALARGAELIMVRDNLR 532

Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIY 314
           H  +STT IY + +         + +
Sbjct: 533 HASVSTTSIYLHSDEVQRARQFDQAF 558


>gi|257439570|ref|ZP_05615325.1| transposase [Faecalibacterium prausnitzii A2-165]
 gi|257198017|gb|EEU96301.1| transposase [Faecalibacterium prausnitzii A2-165]
          Length = 417

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/294 (18%), Positives = 114/294 (38%), Gaps = 38/294 (12%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +    E+K+    I  +  ++ + +  + + +  G +++      +K+      +     
Sbjct: 130 MRILQEDKLGACRIENVKLSDAKEWALRMKEKGYGFKTINNHKRSLKAAFYTAIQDDCIR 189

Query: 110 ESNI-LNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     +  + + ++ P+  L+  Q    +  V     H+  +    +  I+  L G G
Sbjct: 190 KNPFDFQLNTVLEDDTEPKEPLSPTQEAAFLSFV----QHDKVYQKYYDEIII--LLGTG 243

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAIL 211
           LRISE   LT  +I  D+  + +                       R++P+   V +A  
Sbjct: 244 LRISELCGLTEADIDLDKQLINVDHQLLKIADVGYYVETPKTKSGNRVIPMSEKVLEAFQ 303

Query: 212 EYYDLCPFDLNL---NIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGLPLST 260
              +   +   +        LF    G P        +  G+ ++Y +   + + LP   
Sbjct: 304 RVLNKRKYAQPVILEGYTKFLFLNRNGLPKVAVNYESMFRGLVRKYTKT--QKVALPKVM 361

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           T HTLRH+F T L + G + +++Q I+GH  ++ T   Y +  S+     M  +
Sbjct: 362 TPHTLRHTFCTTLANAGMNPKALQYIMGHSNINMTLNYYAHTTSETSITEMKRL 415


>gi|116626671|ref|YP_828827.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229833|gb|ABJ88542.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 265

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 59/259 (22%), Positives = 103/259 (39%), Gaps = 28/259 (10%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RT 80
           L+ LE  R  S+ T ++Y    ++F              ++  QL    IR +     + 
Sbjct: 9   LEELE-RRNYSQATARAYVGAIQRFAEHFH---------RSPDQLGPEHIREYQLHLVQD 58

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQALTLVD 139
           +K+  R++   +S ++ F + + KR+   +     +   K     +P  L+  +   L+ 
Sbjct: 59  RKLHPRTVMIQMSALRFFFRKVLKRRFDRDD----LPLPKLLRRQIPMVLSRDEVARLI- 113

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR 198
                        + R+  IL  LY  G+R +E   L  ++I  ++  L I+ GKG K R
Sbjct: 114 ---------AAAGNLRHRTILMALYATGMRRAELCHLRIEDIDKERMVLHIRQGKGGKDR 164

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            VPL P +   +  +Y   P      +   L      +P+         RQ  R  G+  
Sbjct: 165 EVPLPPKLLAQLRIHYRALPHRSAW-VFPSLQSRRPDQPMTEKAVWHACRQAARRAGITK 223

Query: 259 STTAHTLRHSFATHLLSNG 277
           S   HTLRH  A+  +  G
Sbjct: 224 SVHPHTLRHYAASRTMPRG 242


>gi|301309611|ref|ZP_07215553.1| transposase [Bacteroides sp. 20_3]
 gi|300832700|gb|EFK63328.1| transposase [Bacteroides sp. 20_3]
          Length = 412

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 53/295 (17%), Positives = 112/295 (37%), Gaps = 30/295 (10%)

Query: 31  LSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSL 88
            S +T+  Y+   ++    + ++Y +E IT     +L+   IRAF    +T+  +   ++
Sbjct: 129 YSPVTINRYKNVVKKLQRLIPSYYGKEDITFH---ELTPEFIRAFDIYLKTEGGLCRNTI 185

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R +   K F      ++   ++     + +++  + P  L   +   ++         E
Sbjct: 186 VRYMKCFKKFTNMALAKEWMRKNPFYGYK-MEQDETDPVFLTYDELQAVMKKKFTIPRLE 244

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSL--------TPQNIMDDQSTLRIQGKGDKIRIV 200
                     I       GL  S+  +L           +    +  ++++ +     I 
Sbjct: 245 LV------RDIFVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRVKLEHRRKASSIS 298

Query: 201 PLLP-SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
            +    V  AILE Y   P  +     LP+    +           Y++++  + G+  +
Sbjct: 299 NIPLLPVPLAILEKYREHPICVKKGCCLPVMCNQKM--------NSYLKEIADFCGIKKN 350

Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            T H  RH+F T + L+N   L+ +  +LGH     TQ Y  V + +  + M  +
Sbjct: 351 LTTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNNV 405


>gi|288800952|ref|ZP_06406409.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332413|gb|EFC70894.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 417

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 109/278 (39%), Gaps = 17/278 (6%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
                +FL     Y  + I +Q        ++  + +K +  K+        L+ + S L
Sbjct: 142 RKHLAKFLRH--RYRVDDIPVQKADTALIKDLEEYFAKEKGFKLNTS--AGYLTMLASLL 197

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           K L KR I      +   +++ +   PR +  ++   +       + +E +  +  +  +
Sbjct: 198 KDLHKRHIIDIYPFIA-HSIRWNVGTPRYITREEVNRI----AALSDNELQGYEQVSRDM 252

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDL 216
                  GL  ++   LT ++I+ +     I+    K   I  +PLLP     I  Y  +
Sbjct: 253 FLFSCYTGLSYTDVYHLTAEHIIHESGMNWIRKPRIKTGNICHIPLLPEASAIIERYRGI 312

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LS 275
                           I G          +++++ R  G+  + T H  RH+FA+ + LS
Sbjct: 313 HTRAFRHEPPKGYLLPIPGC----DTVNIHLKKIARLCGIQKTLTFHMARHTFASQMTLS 368

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G  + S+  +LGH ++ TTQ+Y   + +     + +I
Sbjct: 369 EGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKI 406


>gi|291530639|emb|CBK96224.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 310

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/271 (18%), Positives = 104/271 (38%), Gaps = 26/271 (9%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            +  ++  +++ F+ ++    +  +++K  L  ++  LK+  K++         +    +
Sbjct: 44  DLTTVTEKDVQEFVLQKLQSGLSQKTIKDMLIVLRMILKFGAKKQYCAYVPFDVIFPTDR 103

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
                  L+      +V  V  + +             + +    G+RI E  +LT  +I
Sbjct: 104 EKQELDVLSVVNQRKIVSYVRDNFTFRNLG--------ILICLSTGIRIGEVCALTWDDI 155

Query: 182 MDDQSTLRIQGK-------GDKIRIVPLLPSVRK---------AILEYYDLCPFDLNLNI 225
             D   + I+            +R   LL    K          I E Y++      +  
Sbjct: 156 DIDNGVIHIRKTIQRIYVNEGGVRKTELLIDTPKTATSMRDIPMIKELYEVLKPLKKVVR 215

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
                     +P  P  ++ Y ++L   LG+P     H LRHSFAT  + +  D +++  
Sbjct: 216 SDYYVLTNDAEPTEPRTYRNYYKRLLDKLGIP-PIKFHGLRHSFATRCIESKCDYKTVSV 274

Query: 286 ILGHFRLSTT-QIYTNVNSKNGGDWMMEIYD 315
           ILGH  +STT  +Y + N +     + +++ 
Sbjct: 275 ILGHSNISTTLNLYVHPNYEQKKRCIDKMFR 305


>gi|327470042|gb|EGF15506.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK330]
          Length = 356

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 110/326 (33%), Gaps = 45/326 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  +  +F  ++            +I +  +  +S  ++ AFI   R +   
Sbjct: 33  YSFTTLYEYLKEYDRFFNWVLESGITNASHIAEIPLSVLENMSKKDMEAFILYLRERPLL 92

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                   +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 93  NANTTQNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVSTKKKKETLAA 152

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA--------RNSAILYLLYGCGLRIS 171
           +  N   +     +    +  +      +              R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETEEFLLYIDREYPKKLSNRALSSFNKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLF 230
           EA++L  ++I      + +  KG K   V +    +  + EY  +              F
Sbjct: 213 EAVNLDLKDINLKMMVIEVTRKGGKRDSVNVAAFAKPYLEEYLSIRIKRYKAEKTDTAFF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +        +  T H LRH+ AT L         +   L
Sbjct: 273 LTEYRGTPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH     T +YT++ +    + + ++
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNALDKL 356


>gi|158522964|ref|YP_001530834.1| integrase family protein [Desulfococcus oleovorans Hxd3]
 gi|158511790|gb|ABW68757.1| integrase family protein [Desulfococcus oleovorans Hxd3]
          Length = 409

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 64/283 (22%), Positives = 102/283 (36%), Gaps = 16/283 (5%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-IT 108
              +  E I      +++   +         +K   R+++ +L   +      +KR   T
Sbjct: 134 YRVHLAETIGNLPFGKIAAFHVERVKKAMADKKKAGRTIQYALQVTRQVFNMARKRGVYT 193

Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
            E+    ++  K  N   R L+  +A  L D +        K  +  + A+L L    GL
Sbjct: 194 GENPTSAVKWPKLDNMKMRYLSIDEAEKLFDALAA------KSHNLHDMALLSL--HSGL 245

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
           R  E   LT   +     TL I       R   L    +  +    +  P +L    +  
Sbjct: 246 RFGEIAKLTWSCVNWKAGTLAILDAKTGSRTAYLTTRAKAMLKNREEGAPNELIFQKRSG 305

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL---STTAHTLRHSFATHLLSNGGDLRSIQS 285
           L   I         F R +++L    G+       T HTLRHS+ATHL  +  DL   Q 
Sbjct: 306 LDGSIARA---SKTFSRVVKELGLNQGITDRKQKVTFHTLRHSYATHLYESTHDLYLTQK 362

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
            LGH   + TQ Y  +      +      +    +  QK KKN
Sbjct: 363 SLGHTTSTMTQRYAKMTENRLREG-SAALEAAFKTNGQKKKKN 404


>gi|160936910|ref|ZP_02084274.1| hypothetical protein CLOBOL_01799 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440100|gb|EDP17847.1| hypothetical protein CLOBOL_01799 [Clostridium bolteae ATCC
           BAA-613]
          Length = 290

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 59/287 (20%), Positives = 108/287 (37%), Gaps = 39/287 (13%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  T++ Y      F  +              + +S   +  +    R Q     +   +
Sbjct: 24  SSGTIKKYFYYLNLFRKYADG-----------KPVSKELVIVWKDTLREQ-FSPVTANSA 71

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL----PRALNEKQALTLVDNVLLHTSH 147
           L+ +  F K+      T       +R +K  + +     R L+ ++ + LV+      + 
Sbjct: 72  LAALNGFFKWFGWEDCT-------VRLIKVKHRMFCSGQRELSREEYIRLVNVARGEGNE 124

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
                      +L  +   G+RISE   +T   +    + +  +GK   IR V L   + 
Sbjct: 125 RLS-------LLLQTVCSTGIRISELSFITVNAVDKQVAEVDCKGK---IRTVFLTNGLC 174

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLR 266
           + +  Y           I   +F    GKP++     R ++Q+    G+ P     H LR
Sbjct: 175 RLLKAYARKRNI-----ISGMIFVTRSGKPMDRSNIWREMKQISHKAGVNPDKVFPHNLR 229

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           H FA    S   DL  +  ILGH  ++TT+IYT  + +N    + ++
Sbjct: 230 HLFARVYYSQEKDLVRLADILGHSSVNTTRIYTMESGENHLRQLEKM 276


>gi|288801868|ref|ZP_06407310.1| integrase [Prevotella melaninogenica D18]
 gi|288335910|gb|EFC74343.1| integrase [Prevotella melaninogenica D18]
          Length = 431

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 53/283 (18%), Positives = 108/283 (38%), Gaps = 16/283 (5%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSF 98
           Y  D +    F+     + I+I TI +  + E R F+ KR    +   ++  +L  +   
Sbjct: 132 YYSD-KNLRDFIENKGVQDISIVTITESLFEEYRFFLKKR---GLKASTVNTNLCWLSRL 187

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           +      +I   ++  N +  K+   + R L +   + L+   +     E          
Sbjct: 188 MFRAVSSRIIRCNSFENAKYEKEEKKI-RFLQKGDVMKLMAMTMNDRESELA------RL 240

Query: 159 ILYLLYGCGLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
           +       G+ I++  +L  ++I    D +  +R + +  K+  V  L  + +AI+ +  
Sbjct: 241 MFVFSCFTGMAIADMENLEYRHIQTAADGRKYIRKERQKTKVEFVVPLHPIAEAIIRHCL 300

Query: 216 LCPFDLNLNIQLPLFRGIRGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                      +         P   +  V    +  + +  G+    + H  RH+F T  
Sbjct: 301 EEQKGNEEQQTVKEKGKKHIFPRECSRSVIDGRLSIVGKACGIRQRLSYHVARHTFGTMS 360

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           LS G  + SI  ++GH  +S+TQIY  V      + M  +  +
Sbjct: 361 LSAGIPIESIAKMMGHASISSTQIYAQVTDNKISEDMDRLIAK 403


>gi|134101614|ref|YP_001107275.1| phage integrase family site specific recombinase [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133914237|emb|CAM04350.1| site-specific recombinase, phage integrase family
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 312

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 99/266 (37%), Gaps = 9/266 (3%)

Query: 35  TLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
           T  +Y     QF  FL     +         + +   I  F +     +    +      
Sbjct: 32  TRYNYLLAVAQFARFLTDNAADCAAGPAAPAESTRAHIEEFQAWMIETR-SASTALNKHK 90

Query: 94  GIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
            ++ F K+  +  +    S +  ++       L   + ++    ++D     T +   + 
Sbjct: 91  VLQQFFKWLAEDEQEIDRSPMERVKAPTTPTKLVPVMGDEDTKKILD-----TCNGKTFT 145

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           D R+ AI+ L YG G R++E  +LT  ++     ++  QGKG K R V   P   +A+  
Sbjct: 146 DLRDQAIIRLYYGTGARLAEVANLTTDDLDMATDSVVYQGKGGKSRRVRFGPKTARALSR 205

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           Y          ++          +PL     +  +++  ++ G+     AH  RH++A  
Sbjct: 206 YLRARSRHRAADVPSLWLAARGAQPLQANGIKIMLKRRGKHAGVS-GVHAHRWRHNYAHA 264

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIY 298
               GGD   +  +LG    +  + Y
Sbjct: 265 WKLAGGDTGDLMLLLGWSTDAMARHY 290


>gi|28867814|ref|NP_790433.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28851049|gb|AAO54128.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 336

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 118/320 (36%), Gaps = 44/320 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q WL+ L    G +  TL++Y      +L+     + E         +++ ++  +I +
Sbjct: 17  VQEWLE-LLGNLGRAPATLEAYGRGLAHYLLHCEASSLEA------ESITFEQVTLYIRR 69

Query: 78  R---RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN---------------- 118
               +   + + +L + L+ I+ +  +L  +    ++ +   ++                
Sbjct: 70  LLPGQENAVANSTLHQRLTAIRLWYDHLVFQGRCAQNPVPRDQHGRLCQIPGHSGFVRGL 129

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           + +   LP    ++Q    +      +         R+  +L L Y   LR +E + L  
Sbjct: 130 VPRLIKLPDIPTDEQWRYFLSIAARSS--------IRDRLMLSLAYCGALRRAELVGLRI 181

Query: 179 QNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG--- 232
           +++      + ++    KG + R+V   P +   +  +       L    +  LFR    
Sbjct: 182 EDLDLAHRLISVRAETTKGRRSRVVCYSPDIAPILGTHLHA--LRLAGWSKGALFRSESD 239

Query: 233 -IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
             RG  L    + + + +  R   L    + HT RH   THL   G  L  + +  GH  
Sbjct: 240 RNRGSALTRWTWSKTVERWARDSNLSC-LSTHTFRHLRLTHLARAGWKLHELTAYAGHRD 298

Query: 292 LSTTQIYTNVNSKNGGDWMM 311
             TT IY +++  +    + 
Sbjct: 299 PKTTLIYVHLSGADLTARLA 318


>gi|281334679|gb|ADA61763.1| Tn554-related, transposase A [Staphylococcus epidermidis]
          Length = 370

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 59/346 (17%), Positives = 127/346 (36%), Gaps = 71/346 (20%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI---- 75
            +L+ L+  +  S  T ++Y    ++F ++L     +KI  + +   ++ +   ++    
Sbjct: 42  RYLKYLDSVK-KSLNTKKTYAYALKKFFVYLEN---KKICYKEVSFDNFVDFIRWMKKPF 97

Query: 76  -------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES----------------- 111
                    R+   I  +++  +++ + +F  YL + K    +                 
Sbjct: 98  ENENVLSYHRKEISISPKTINLTMTVVSNFYDYLYRSKKLDVNFYDFIHMESKYSKKYKS 157

Query: 112 ----------NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
                      + N+  +K+       L   +   L+           +  + R+  ++ 
Sbjct: 158 FMHHVNKDYRTLKNILKVKEPKKKIEVLTNAEVKKLL----------GETNNIRDKFLIQ 207

Query: 162 LLYGCGLRISEALSLTPQNIMDD---------QSTLRIQGK--GDKIRIVPLLPSVRKAI 210
           LLY  GLRI E LSL   +I  D         ++ L   G       R + +  S+    
Sbjct: 208 LLYETGLRIGEVLSLRIDDIKFDFRKGHQIVLKNRLNDNGTYLKTGERKIFISQSLIDLY 267

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            +Y      +L++     LF  I+G+     +N        ++L+    +  +   H  R
Sbjct: 268 DDYVYEIIDELSI-CSDYLFVKIKGRNVGEAMNYSDICSLFKRLKHKTSI--NVHPHLFR 324

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMM 311
           H+ AT   +   D++ +Q  LGH  + TT  +Y +   +   D + 
Sbjct: 325 HTHATVFYNETKDIKQVQERLGHSNIQTTINLYVHPTERYTRDGIK 370


>gi|260642635|ref|ZP_05416696.2| integrase [Bacteroides finegoldii DSM 17565]
 gi|260621236|gb|EEX44107.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 406

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 62/313 (19%), Positives = 122/313 (38%), Gaps = 25/313 (7%)

Query: 10  VSFELLKERQNWLQNLEIE--RGLSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQL 66
           V    ++    +L++++ +   G S      Y      F+ FL A Y  + +    +  L
Sbjct: 105 VKTTFVEFYDKYLEDIKAQVGAGKSIALYHKYSAARSHFVNFLHAKYGRKDLMPGELTHL 164

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
              +   ++    +  +   S  ++L   K+ + + +K  + T    LN  +        
Sbjct: 165 IIHDFEIYLKTVVS--LKSNSATKTLKFFKTVVIFAQKCGVMTHDPFLN-HHFHLEPVDR 221

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DD 184
             L +++   ++         E      R+  I      CGL   +   LT +NI+  D+
Sbjct: 222 GFLTDEEIQRIMQKDFEIPRLE----MVRDVFIFSCF--CGLAYIDVAHLTQENIITLDN 275

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           +  + I  +   ++    L  + + IL+ Y     D                 L+     
Sbjct: 276 RPWIIINRQKTNVQSNIPLLEIPQMILDKYKGKTKD-----------NRLLPVLSNQKIN 324

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            Y++++    G+    + H  RH+FAT LLS G  + S+  +LGH  + TTQIY  + +K
Sbjct: 325 AYLKEIADLCGIKKRLSYHLARHTFATMLLSKGVPIESVSKMLGHTNIKTTQIYARITNK 384

Query: 305 NGGDWMMEIYDQT 317
                MM++ D+ 
Sbjct: 385 KIEQDMMQVADKF 397


>gi|292557929|gb|ADE30930.1| putative transposon integrase, Tn916 ORF3-like protein
           [Streptococcus suis GZ1]
          Length = 432

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 60/325 (18%), Positives = 113/325 (34%), Gaps = 62/325 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           RGL   T ++Y+            +   +I  +T+  L  T+I+ F +    ++ +   +
Sbjct: 99  RGLKNNTFENYKY-------MYETFVRHQIGSKTVSSLRKTDIKRFYNYLADERHLKPAT 151

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNM-RNLKKSN----SLPRALNEKQALTLVDNVL 142
           +    + +   L           +   N+ + LK+S+       RAL + +    +D  L
Sbjct: 152 IDNIHTVLHQILDMAVDDDYIRNNPSNNVLKELKQSHCFQTEKRRALTKPEQELFLD-YL 210

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--------QGKG 194
            ++     W       +  ++ G GLR+ E   L   +I  ++  + +            
Sbjct: 211 KNSPTSKYW-----YPVFAVMIGTGLRVGEVTGLRWCDIDLEEGIIDVNHTLVYYDHRTE 265

Query: 195 DKIRIVPLLPSVRK----------------------AILEYYDLCPFDLNLNIQLPLFRG 232
              R      +  K                         E  DL            +F  
Sbjct: 266 GSKRGCYFNVNTTKTPAGRRKVPMLGFVKEAFLMEKERQELLDLHCEATVDGYTDFIFIN 325

Query: 233 IRGKPLNPGVFQRYIRQLRRYLG------------LPLSTTAHTLRHSFATHLLSNGGDL 280
             G+P +     + IR++ R               L    + H+LRH+F T +   G ++
Sbjct: 326 RFGQPQHQATLNKAIRRIIRDCNDEQLLKDENAEVLLPHFSCHSLRHTFTTRMCEAGVNV 385

Query: 281 RSIQSILGHFRLSTT-QIYTNVNSK 304
           + IQ  LGH  +STT  IYT+V  +
Sbjct: 386 KVIQDTLGHKDISTTLNIYTDVTKE 410


>gi|169834019|ref|YP_001694598.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           Hungary19A-6]
 gi|229892079|sp|B1IBW3|XERS_STRPI RecName: Full=Tyrosine recombinase xerS
 gi|168996521|gb|ACA37133.1| tyrosine recombinase XerC [Streptococcus pneumoniae Hungary19A-6]
          Length = 356

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 117/326 (35%), Gaps = 51/326 (15%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYT------EEKITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  +  +F  ++             I +  +  +S  ++ +FI   R     
Sbjct: 33  YSFTTLYEYLKEYDRFFSWVLESGISNADKMSDIPLSVLENMSKKDMESFILYLRERPLL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKR--------------------KITTESNIL 114
                 Q +   ++ R+LS + S  KYL +                     K   E+   
Sbjct: 93  NANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAA 152

Query: 115 NMRNLKKSNSLPR----ALN--EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
              N+K+   L       L   +++    + N  L + ++ K    R+ AI+ LL   G+
Sbjct: 153 RAENIKQKLFLGDETEGFLTYIDQEYPQQLSNRALSSFNKNK---ERDLAIIALLLASGV 209

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQL 227
           R+SEA++L  +++      + +  KG K   V +    +  +  Y  +         I  
Sbjct: 210 RLSEAVNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKIDT 269

Query: 228 PLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
            LF  +       ++    ++ + +        +  T H LRH+ AT L         + 
Sbjct: 270 ALFLTLYRGVPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVS 327

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWM 310
             LGH     T +YT++ +    + +
Sbjct: 328 HQLGHASTQVTDLYTHIVNDEQKNAL 353


>gi|270293959|ref|ZP_06200161.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
 gi|270275426|gb|EFA21286.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
          Length = 379

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/264 (19%), Positives = 98/264 (37%), Gaps = 36/264 (13%)

Query: 63  IRQLSYTEIRAFISKRR---------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI 113
           +R++  T +  FI   +          + +   +    L  ++  L         T + +
Sbjct: 129 LRKVDKTYLLGFIDYLKKTKQEHCKKEKTLHVNTQFYYLKTLRYCLNRAVSEDYITVNPM 188

Query: 114 LNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
             ++N    K++ +    L  K+   LV          T + +            CGLR 
Sbjct: 189 NKIKNEDKPKRNRTERDYLTIKELTRLVH---------TPFYNILLRKAFLFSCFCGLRH 239

Query: 171 SEALSLTPQNIMDDQSTL----RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
            + ++L  ++I  D++       IQ K  +   +PL     K +       P   N    
Sbjct: 240 CDIIALRWEDIRYDENGNALLSIIQKKTKEAISLPLCSEAIKHL-------PDRGNAPET 292

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
             +F G+    L        + +     G+    T HT RH+ AT +L+ G DL ++  +
Sbjct: 293 EKVFAGLVS--LGRSNV--ILHKWVEQAGISKHVTFHTARHTHATMMLTLGVDLYTVSKL 348

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWM 310
           LGH  + TTQIY  +  ++    +
Sbjct: 349 LGHTNIQTTQIYAKLVDESKKKAI 372


>gi|257876970|ref|ZP_05656623.1| integrase/recombinase [Enterococcus casseliflavus EC20]
 gi|257811136|gb|EEV39956.1| integrase/recombinase [Enterococcus casseliflavus EC20]
          Length = 289

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 62/277 (22%), Positives = 121/277 (43%), Gaps = 28/277 (10%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RG+S+ T++ ++   + F  FL     +K  I  +  ++   IR F+  +  +   +  +
Sbjct: 20  RGISQKTIKKHQKFLKLFFDFL-----KKEQIYFVEDVTPKSIRQFMLMKLEEGCAETYV 74

Query: 89  KRSLSGIKSFLKYLKKRKIT--TESNILNMRNLKKSNSLPRALNEKQALTLV-------- 138
              L  I+++ KY           +  + ++ +K+   + +  N+ +   ++        
Sbjct: 75  NSHLRSIRAYFKYCVDEDYVRYDRNPCMRVKWVKERKVIIQTFNDMEIKEMLKVAKKLTF 134

Query: 139 ----DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGK 193
                    HT ++TK+ + R+  +L +L   GLRISE ++L   ++      L +  GK
Sbjct: 135 FKPQKMDKQHTGYQTKFTNQRDYLLLLILIDTGLRISEVMNLK--DVHITNKELFVENGK 192

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCP----FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           G K RIV   P + K  ++Y  +      ++   NI   +F    GK  N  + +R I +
Sbjct: 193 GKKDRIVHCSPLIYKEYIKYKRVANSFFEYNEIENIDNYVFLTREGKQYNYILAERAIIK 252

Query: 250 LRRYLGLPL--STTAHTLRHSFATHLLSNGGDLRSIQ 284
           +     +      + H+ RH FA  L+ NG D+  IQ
Sbjct: 253 IGNQCEIRKSIRVSPHSFRHYFAQKLVRNGTDIYRIQ 289


>gi|254885206|ref|ZP_05257916.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|254837999|gb|EET18308.1| integrase [Bacteroides sp. 4_3_47FAA]
          Length = 430

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 96/257 (37%), Gaps = 17/257 (6%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNL 119
             + L+YT +R F    R +     ++ + +  +++ +     +             + +
Sbjct: 168 DFKDLTYTFLRDFEQYLREKGNAVNTIAKHMRQLRTLVNEAINQGYMHADAYPFRKYK-I 226

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K+       L   +   L          E + +     A L+  Y  GLR S+   L+P 
Sbjct: 227 KQEKGRHEFLTPDELKKL-----ETVEVEEESMRHVLDAFLFCCY-TGLRYSDFCQLSPA 280

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           N       +++ GK   +    +   V   +  +       L +  + P    +   P N
Sbjct: 281 NF------IKVNGK-RWLHFTSVKTGVEIRLPLHLLFESRALGILDRYPDIGSLASLPCN 333

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                + +R+L    G+    T H  RH+ AT L+  G  + ++Q +LGH  + TTQIY+
Sbjct: 334 SE-VNKQLRKLAGLCGIKKRITYHVSRHTCATLLVHQGVAITTVQKLLGHTSVKTTQIYS 392

Query: 300 NVNSKNGGDWMMEIYDQ 316
            V S      +  +  +
Sbjct: 393 EVLSSTIVRDLKNVQRK 409


>gi|260886001|ref|ZP_05736317.2| integrase/recombinase [Prevotella tannerae ATCC 51259]
 gi|260850862|gb|EEX70731.1| integrase/recombinase [Prevotella tannerae ATCC 51259]
          Length = 298

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 61/283 (21%), Positives = 117/283 (41%), Gaps = 24/283 (8%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           +I R   + T+  +  +   F+ FL   ++ K +      +   ++ +F+S         
Sbjct: 4   QINRRRCETTVLKHRRNLSYFIAFLETRSKSKFS-----DIGEDDVVSFLS------TSR 52

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
            ++ R  S ++ FL++L  ++        +L+     K   LP     ++   +      
Sbjct: 53  NAIDRYFS-LRLFLRFLSVQEYIQTDFEYVLSRNRYPKREKLPSIYGAEEIQQI-----E 106

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-RIQGKGDKIRIVPL 202
            +  ++  +  R+ AIL L    GLR S+   L  +++  D + +   Q K  K   +PL
Sbjct: 107 LSVEQSGPVGKRDYAILLLATRLGLRASDICRLKFEHLDWDHNIIAFTQYKTRKAIELPL 166

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP---LS 259
           L  V +AI+ Y       ++ + ++ L      +P+        I ++ R  G+      
Sbjct: 167 LTEVGEAIVNYL-RYSRPISRHPEIFLSARPPYRPMFRWGINNAISRIMRESGIDISGRK 225

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              H +RHS A+ LL+NG  L  I   LGH    +T  Y  V+
Sbjct: 226 FGPHAMRHSLASRLLANGVSLPVISESLGHDSSLSTMEYLRVD 268


>gi|150377509|ref|YP_001314104.1| phage integrase family protein [Sinorhizobium medicae WSM419]
 gi|150032056|gb|ABR64171.1| phage integrase family protein [Sinorhizobium medicae WSM419]
          Length = 381

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 63/280 (22%), Positives = 118/280 (42%), Gaps = 27/280 (9%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ--TIRQLSYTE 70
           ELL + + +L+    +RGLS  +++         L F A +   +   Q   +  L+  +
Sbjct: 108 ELLGDLETYLER---QRGLSPRSVK-------HVLGFAARFLAHRFGDQMLDLAILNARD 157

Query: 71  IRAFISKRRTQK--IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS--NSLP 126
           + AF+     +K    D++L    S ++SF +YL  + + T +  L +  + K     LP
Sbjct: 158 VVAFMEHVIGRKTPYRDKTLS---SHLRSFFQYLFAQGLITTNLSLCVPRVHKPWGARLP 214

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R L+  +   ++      +        AR+ A+L L+   G+R  E +++   +I     
Sbjct: 215 RYLSPDEVEAVL-----ASVATNPRRGARDYAMLLLMARLGMRAPEVMAVQLDDIDWRAG 269

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            L ++GKG +   +P+   V +AI  Y         +   L   R       +  +    
Sbjct: 270 ELLVRGKGKRHDRLPIPSDVGEAISRYLREERTSTTIRTLLVSHRAPNRPFKDSQIINSI 329

Query: 247 IRQLRRYLGLPLS---TTAHTLRHSFATHLLSNGGDLRSI 283
           +R+     G+        +H LRHS AT+L+ +G  L  I
Sbjct: 330 LREAFAATGVKPPTPYVGSHVLRHSLATNLVRSGASLEEI 369


>gi|307564601|ref|ZP_07627138.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307346686|gb|EFN91986.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 439

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 57/285 (20%), Positives = 103/285 (36%), Gaps = 25/285 (8%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           K T++++    + F +FL     E    +   +      R F+   R     + ++   L
Sbjct: 130 KATVRAFRDSRKNFALFLKTRENEDCLPKEADKDLIESYRLFM--LRDLGNKESTVSNRL 187

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +   ++   + +         +        +     E+ ALT  D   L +    + +
Sbjct: 188 RHLHQVIRKALQERYIHADPFELID-------IETPTYERNALTSDDLHKLLSYRPHRSV 240

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           D     I  L    GL  S+   L   ++    D +  + +     + R +  L  + + 
Sbjct: 241 DNHCRLIFLLGCFTGLAFSDLKKLRMGDVYTFGDGRRYISLCRTKTQNRSIVPLLPIAEE 300

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS--TTAHTLRH 267
           IL        +  L  + P              F R IR +    GLP     T+HT RH
Sbjct: 301 ILTIVSDGRKEGLLFREFP----------TNSHFNRKIRDIIIKAGLPSHTEATSHTARH 350

Query: 268 SFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +FAT   L NG  + ++  +LGH  +STT++Y  V+       M 
Sbjct: 351 TFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKSKIAREMQ 395


>gi|224539317|ref|ZP_03679856.1| hypothetical protein BACCELL_04222 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519064|gb|EEF88169.1| hypothetical protein BACCELL_04222 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 393

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 55/281 (19%), Positives = 105/281 (37%), Gaps = 33/281 (11%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK---------IGDRSLKRSLS 93
               +  L  Y    I    + ++    I  F+   +T K         +   +      
Sbjct: 126 LHAVVYHLRRYNPNDIQ---LSRIDKDYILGFLDYLKTAKQTHTKKEKLLHVNTQVYYYK 182

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            ++  L Y    ++ + + +  ++N +K +   +   E++ LT+ +   L    +T + +
Sbjct: 183 MLRYCLNYAVSEELISANPMNKIKNEEKPH---KHRTEREYLTIDELRKLA---QTPFYN 236

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
                       CGLR S+ ++LT  +       +     IQ K  +   +PL     K 
Sbjct: 237 GLLKKAFLFSCFCGLRHSDIIALTWGDIEMDDDGNSRLYIIQKKTKEAISLPLSQEAIKQ 296

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           + +  D    D+     + L R     P           +     G+    T HT RH+ 
Sbjct: 297 LPKREDAKEDDIIFKKLITLGRTNEILP-----------KWAEQAGIKKHITFHTARHTH 345

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           AT LL+ G DL ++  +LGH  + TTQIY  +  ++    +
Sbjct: 346 ATMLLTLGVDLYTVSKLLGHTNIQTTQIYAKLVDESKKKAI 386


>gi|322376560|ref|ZP_08051053.1| integrase/recombinase, phage integrase family [Streptococcus sp.
           M334]
 gi|321282367|gb|EFX59374.1| integrase/recombinase, phage integrase family [Streptococcus sp.
           M334]
          Length = 356

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 116/326 (35%), Gaps = 51/326 (15%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  +  +F  ++             I +  +  +S  ++ AFI   R     
Sbjct: 33  YSFTTLYEYLKEYDRFFSWILESGISNADKMSDIPLSVLENMSKKDMEAFILYLRERPLL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKR--------------------KITTESNIL 114
                 Q +   ++ R+LS + S  KYL +                     K   E+   
Sbjct: 93  NANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAA 152

Query: 115 NMRNLKKSNSLPR----ALN--EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
              N+K+   L       L   +++    + N  L + ++ K    R+ AI+ LL   G+
Sbjct: 153 RAENIKQKLFLGDETEGFLTYIDQEYPQQLSNRALSSFNKNK---ERDLAIIALLLASGV 209

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQL 227
           R+SEA++L  +++      + +  KG K   V +    +  +  Y  +            
Sbjct: 210 RLSEAVNLDLRDLNLKMMIIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKTDT 269

Query: 228 PLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
            LF  +       ++    ++ + +        +  T H LRH+ AT L         + 
Sbjct: 270 ALFLTLYRGIPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVS 327

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWM 310
             LGH     T +YT++ +    + +
Sbjct: 328 HQLGHASTQVTDLYTHIINDEQKNAL 353


>gi|28868234|ref|NP_790853.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|28851471|gb|AAO54548.1| integrase/recombinase XerC, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 336

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 115/320 (35%), Gaps = 44/320 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q WL  L    G +  TL +Y      +L+       E         +++ ++  +I +
Sbjct: 17  VQQWLA-LLGNLGRAPATLDAYGRGLAHYLLHCEASGLEA------ESITFEQVTLYIRR 69

Query: 78  R---RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN---------------- 118
               +   + + +L + L+ I+ +  +L  +    ++ +   ++                
Sbjct: 70  LLPGQENAVANSTLHQRLTAIRLWYDHLVFQGRCAQNPVPRGQHGRLCQIPGHSGFVRGL 129

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           + +   LP    ++Q    +      +         R+  +L L Y   LR +E + L  
Sbjct: 130 VPRLIKLPDIPTDEQWRYFLSIAARSS--------IRDRLMLSLAYCGALRRAELVGLRI 181

Query: 179 QNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG--- 232
           +++      + ++    KG + R+V   P +   +  +       L    +  LFR    
Sbjct: 182 EDLDLAHRLISVRAETTKGRRSRVVCYSPDIAPILGTHLHA--LRLAGWSKGALFRSESD 239

Query: 233 -IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
             RG  L    + + + +  R   L    + HT RH   THL   G  L  + +  GH  
Sbjct: 240 RNRGSALTRWTWSKTVERWARDSNLSC-LSTHTFRHLRLTHLARAGWKLHELTAYAGHRD 298

Query: 292 LSTTQIYTNVNSKNGGDWMM 311
             TT IY +++  +    + 
Sbjct: 299 PKTTLIYVHLSGADLTARLA 318


>gi|320321239|gb|EFW77374.1| integrase/recombinase XerC, putative [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320328696|gb|EFW84696.1| integrase/recombinase XerC, putative [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330885519|gb|EGH19668.1| integrase/recombinase XerC [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 336

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 115/320 (35%), Gaps = 44/320 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q WL  L    G +  TL +Y      +L+       E         +++ ++  +I +
Sbjct: 17  VQEWLA-LLGNLGRAPATLDAYGRGLAHYLLHCEASGLEA------ESITFEQVTLYIRR 69

Query: 78  RR---TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN---------------- 118
            +      + + +L + L+ I+ +  +L  +    ++ +   ++                
Sbjct: 70  LQPGQENAVANSTLHQRLTAIRLWYDHLVFQGRCAQNPVPRGQHGRLCQVPGHSGFVRGL 129

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           + +   LP    ++Q    +      +         R+  +L L Y   LR +E ++L  
Sbjct: 130 IPRLIKLPDIPTDEQWRYFLSIAARSS--------IRDRLMLSLAYCGALRRAELVALRI 181

Query: 179 QNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG--- 232
           +++      + ++    KG + R+V   P +   +  +       L    +  LFR    
Sbjct: 182 EDLDLAHRLISVRAETTKGRRSRVVCYSPDIAPILGTHLHA--LRLAGCSKGALFRSESD 239

Query: 233 -IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
             RG  L    + + + +      L    + HT RH   THL   G  L  + +  GH  
Sbjct: 240 RNRGSALTRWTWSKTVERWAADSNLSC-LSTHTFRHLRLTHLARAGWKLHELTAYAGHRD 298

Query: 292 LSTTQIYTNVNSKNGGDWMM 311
             TT IY +++  +    M 
Sbjct: 299 PKTTLIYVHLSGADLTAKMA 318


>gi|195963186|emb|CAQ43011.1| transposase B [Staphylococcus aureus]
          Length = 630

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 58/286 (20%), Positives = 106/286 (37%), Gaps = 24/286 (8%)

Query: 38  SYECDTRQ-FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           SY  D  Q    F  F   +   +Q + QL+  E  A++S+     I   ++   +S ++
Sbjct: 236 SYVSDIAQRLKEFFNFLDMKFKQVQRVHQLTRVENEAYLSELNMMGIKPSTITGRISILE 295

Query: 97  SFLKYLKKRKITTESNILNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
                L + +     + + + +    K   + PR ++E   L  +++ L           
Sbjct: 296 GLFSTLLRLEWDDVPSKILIYSEDYPKIPRAKPRFIDE-FVLEQLNSHLDKLPE------ 348

Query: 154 ARNSAILYLLYGCGLRISEALSLT----PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              + +  ++  CG+RISE  +L      ++   D      Q K  K  IVP+   V  A
Sbjct: 349 -YIATMTMIVQECGMRISELCTLKKGCLLEDKDGDFFLKYYQWKMKKEHIVPISKEV--A 405

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST------TAH 263
           +L                 LF    G PL    F+  + +L     +   +       AH
Sbjct: 406 LLIKVREDKVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKSGEIYRFHAH 465

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             RH+  T +++NG     +Q  LGH     T  Y ++  +   + 
Sbjct: 466 AFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFDETLKNE 511


>gi|111017694|ref|YP_700666.1| tyrosine recombinase [Rhodococcus jostii RHA1]
 gi|111023863|ref|YP_706835.1| integrase/recombinase [Rhodococcus jostii RHA1]
 gi|110817224|gb|ABG92508.1| tyrosine recombinase [Rhodococcus jostii RHA1]
 gi|110823393|gb|ABG98677.1| possible integrase/recombinase [Rhodococcus jostii RHA1]
          Length = 353

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 55/312 (17%), Positives = 107/312 (34%), Gaps = 34/312 (10%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
            + RG S +T+++   +  + L  L          + + + +  ++   +       +  
Sbjct: 37  RVVRGFSAVTIENETGELERMLAALG---------KPVWEATADDVDRVVGAMAADGLLA 87

Query: 86  RSLKRSLSGIKSFLKYLKKR---------KITTESNILNMRNLKK-----SNSLPRALNE 131
            + +R +  + SF ++L  R          +   + I      +         LP   + 
Sbjct: 88  STRRRYVQALSSFHRFLITRRAGVIEAMFGVRLTNPIDEFNASRHVGDDSPRLLPPP-SV 146

Query: 132 KQALTLVDNVLLHTSHETKW-IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---T 187
            +     D +        K+   AR+ A+   LY  GLR  EA  L   ++   +     
Sbjct: 147 SRVAVFFDFLKERIGSARKYAPAARDYALFRTLYHAGLRSDEASKLEIADVYFGRGPFGK 206

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVF 243
           L ++         P    V         +  +  ++  +LP    LF    G  +  G  
Sbjct: 207 LHVRFGKGARTSGPRPRWVPMLDHLDLVVRWYLEDVRPKLPESAVLFCDQSGGAMARGTI 266

Query: 244 QRYIRQL--RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  +R L    +       + H LR + ATH    G DL +IQ +LGH+ + +T  Y   
Sbjct: 267 RNRLRYLQDLEHCSPADRFSPHALRRACATHNYERGVDLVAIQQMLGHWTVGSTMRYVRP 326

Query: 302 NSKNGGDWMMEI 313
           +     D     
Sbjct: 327 SETFIEDAYRSA 338


>gi|329116924|ref|ZP_08245641.1| site-specific recombinase, phage integrase family [Streptococcus
           parauberis NCFD 2020]
 gi|326907329|gb|EGE54243.1| site-specific recombinase, phage integrase family [Streptococcus
           parauberis NCFD 2020]
          Length = 381

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 57/318 (17%), Positives = 125/318 (39%), Gaps = 35/318 (11%)

Query: 22  LQNLEIERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           L  L +E    KLT++  +Y   TR     L  Y  +      + ++S T+I++F++   
Sbjct: 73  LVELWLENY--KLTIKPQTYRVTTRLIDCHLLPYFGKM----KVEKISNTDIQSFVNGLS 126

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS---LPRALNEKQALT 136
           ++ +  R++    + +   L+Y     +   +   ++   KK  +     + ++     T
Sbjct: 127 SKLVNFRTVNSINTRV---LQYGVSLNLIPFNPARDVILPKKQKAGRDSVKFIDTNDLKT 183

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---- 192
           L++ +   +    ++          LL   GLRI EA++L   +I  + +T+ I      
Sbjct: 184 LLNFMEKQSFRRYRY--QVEYVFYKLLLATGLRIGEAVALEWSDIDLENATIDINKSFSQ 241

Query: 193 ---------KGDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNP 240
                         R++ +       +  Y         ++   +    F     + L+ 
Sbjct: 242 ELRLVSTTKTKAGTRLISIDKETVNLLKLYQVRQRQLFHEVGGGVPKVAFATPTREYLSR 301

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYT 299
              Q  +      LG+P   T H  RH+ A+ LL+ G   + +Q  LGH  ++ T  +Y+
Sbjct: 302 LTLQNNLNSRCERLGIPR-FTFHAFRHTHASLLLNAGISYKELQYRLGHSNIAMTLDVYS 360

Query: 300 NVNSKNGGDWMMEIYDQT 317
           +++     + +   Y++ 
Sbjct: 361 HLSKDKEKEAV-SYYEKA 377


>gi|304360893|ref|YP_003857013.1| gp41 [Mycobacterium phage CrimD]
 gi|302858642|gb|ADL71387.1| gp41 [Mycobacterium phage CrimD]
          Length = 362

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 59/309 (19%), Positives = 111/309 (35%), Gaps = 26/309 (8%)

Query: 20  NWLQ-NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            WL+  L+ + G+ K T+  YE         +A   +  +    +  L+  +I  ++   
Sbjct: 70  EWLRHYLDHKTGVEKSTIYDYE-------KVVAKDIDPVLGPIPLAALTGDDIAKWVQAL 122

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +  +++      + S L    +      +     R  +   +    L  +Q   L 
Sbjct: 123 AERGLKGKTISNKHGFLSSALNAAVRAGRIPGNPAAGARLPRTEKAEMVFLTREQYAKLH 182

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           DN+ L               ++  L   G R  E ++L P ++  D ST+RI     +  
Sbjct: 183 DNITLPWQP-----------LVEFLVASGARWGEVVALRPSDVNRDASTVRISRASKRTY 231

Query: 199 IVPLL----PSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQ-RYIRQLRR 252
                    P   K++            L+     LF    G P+    F     +   +
Sbjct: 232 EKGSYSVGAPKTHKSVRTINVDASVLDKLDYSGEHLFTNNVGNPVRHNNFHANVWQPALK 291

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMM 311
             GL +    H LRH+ A+ L++ G  L +I+  LGH  +  T   Y +++  +G     
Sbjct: 292 RAGLDVKPRVHDLRHTCASWLIAAGVPLPAIRDHLGHESIKITVDTYGHLDRSSGQAVAA 351

Query: 312 EIYDQTHPS 320
            I  Q  P+
Sbjct: 352 AIAAQLDPA 360


>gi|239622583|ref|ZP_04665614.1| phage protein [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|239514580|gb|EEQ54447.1| phage protein [Bifidobacterium longum subsp. infantis CCUG 52486]
          Length = 279

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 59/308 (19%), Positives = 117/308 (37%), Gaps = 43/308 (13%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           ++   +   E   WL++L    GLS+ T+ +  C        L          ++   ++
Sbjct: 9   KLPPAQWRDEITLWLESLTAA-GLSQDTVNTRRCKIGHAARCLD---------KSPYDVT 58

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
             ++  + +   +Q     + K   + +  F ++L       +     +  ++K+   PR
Sbjct: 59  SEDLVHWTA---SQSWKAETRKGYRNTLVGFFRWLHATGRRADDPAAALPKVRKTRPHPR 115

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS- 186
              +      +              +     +L L    GLR+SE  ++  +++++  + 
Sbjct: 116 PCPDAHIYAAMCA-----------ANDVERLMLRLGAEAGLRLSEIAAVHSRDVLEGDAG 164

Query: 187 -TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            +L ++GKGDK RIVP+   + K I                  LF G     +      R
Sbjct: 165 PSLIVRGKGDKQRIVPISEDLAKRI------------TAAPGWLFPGRWRGHVEKSYVSR 212

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           ++ +L     LP     H+LRH +AT +     DL  +  +LGH  + TTQIY  +    
Sbjct: 213 HLTRL-----LPDGWGPHSLRHRYATRMYETTHDLLLVSKLLGHSSVETTQIYVAMPDSR 267

Query: 306 GGDWMMEI 313
               +  +
Sbjct: 268 LRVGLDAV 275


>gi|237797254|ref|ZP_04585715.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020104|gb|EGI00161.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 348

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 62/304 (20%), Positives = 122/304 (40%), Gaps = 18/304 (5%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
             N+      ++ K  + +L  L      S+LT+     D    L          I    
Sbjct: 38  ARNVSPPALPDVNKPLRLYLDRLAPS---SRLTMTYVLQDAADRLGMADV----DIHDIP 90

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK- 121
              L    + A ++  R       +    ++ I+  +    +  + +   +L +R++K  
Sbjct: 91  WHTLQPGHVTALVATLREDDYAPNTTSLYVNAIRGVMNEAWRHDLISHDQLLKIRSIKPV 150

Query: 122 -SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               L +  N +   TL+  ++   + + +    R++AI+ +LYG G+R SE+++L    
Sbjct: 151 SGTRLFKRRNIR--RTLIRELMEACAADPRPQGRRDAAIIAILYGSGMRKSESVNLDISQ 208

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---RGIRGKP 237
           +   + +LR+ GKG+K  I        KA+ ++ +L    L       +F   R  RG  
Sbjct: 209 VDFAERSLRVMGKGNKQLIKYAPQWAFKALGDWLELRRSFLQPGQSDDVFLFNRIRRGSH 268

Query: 238 LNP-GVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           +    + +  I  + +  G  + ++   H  R SF T ++    DL   Q +  H  +ST
Sbjct: 269 ITRDRITKHAIYFIAKQRGRQVGVNIMPHDFRRSFITRVIEE-YDLSIAQKLAHHTHIST 327

Query: 295 TQIY 298
           T  Y
Sbjct: 328 TASY 331


>gi|315613177|ref|ZP_07888087.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis ATCC 49296]
 gi|315314739|gb|EFU62781.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis ATCC 49296]
          Length = 356

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 116/326 (35%), Gaps = 51/326 (15%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYT------EEKITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  +  +F  ++             I +  +  +S  ++ +FI   R     
Sbjct: 33  YSFTTLYEYLKEYDRFFSWVLESGISDADKMSDIPLSVLENMSKKDMESFILYLRERPLL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKR--------------------KITTESNIL 114
                 Q +   ++ R+LS + S  KYL +                     K   E+   
Sbjct: 93  NANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAA 152

Query: 115 NMRNLKKSNSLPR----ALN--EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
              N+K+   L       L   +++    + N  L + ++ K    R+ AI+ LL   G+
Sbjct: 153 RAENIKQKLFLGDETEGFLTYIDQEYPQQLSNRALSSFNKNK---ERDLAIIALLLASGV 209

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQL 227
           R+SEA++L  +++      + +  KG K   V +    +  +  Y  +            
Sbjct: 210 RLSEAVNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKTDT 269

Query: 228 PLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
            LF  +       ++    ++ + +        +  T H LRH+ AT L         + 
Sbjct: 270 ALFLTLYRGVPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVS 327

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWM 310
             LGH     T +YT++ +    + +
Sbjct: 328 HQLGHASTQVTDLYTHIVNDEQKNAL 353


>gi|148925349|gb|ABR19673.1| integrase [Streptococcus suis SC84]
          Length = 405

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 107/292 (36%), Gaps = 35/292 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +    ++K+ +++I  +  ++ + +  +        +++      +K+      +     
Sbjct: 110 MDILKKDKLGVRSIDSIKPSDAKEWAIRMSENGYAYQTINNYKRSLKASFYIAIQDDCVR 169

Query: 110 ESNI-LNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     ++ +   +++P+  L E+Q   L+         +     ++N   + +L   G
Sbjct: 170 KNPFDFQLKAVLDDDTVPKTVLTEEQEEKLL------AFAKADKTYSKNYDEILILLKTG 223

Query: 168 LRISEALSLTPQNIMDDQS----------------TLRIQGKGDKIRIVPLLPSVRKAIL 211
           LRISE   LT  ++  +                   +         R VP++    +A  
Sbjct: 224 LRISEFGGLTLPDLDFENRLANIDHQLLRDTEIGYYIETPKTKSGERQVPMVEEAYQAFK 283

Query: 212 EYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTA 262
                   D  + I      LF   +  P     +   ++ L +         LP   T 
Sbjct: 284 RVLANRKNDKRVEIDGYSDFLFLNRKNYPKVASDYNGMMKGLVKKYNKYNEDKLP-HITP 342

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           H+LRH+F T+  + G + +++Q I+GH  ++ T   Y +    +    M  +
Sbjct: 343 HSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMKRL 394


>gi|293415643|ref|ZP_06658286.1| type 1 fimbriae regulatory protein [Escherichia coli B185]
 gi|291433291|gb|EFF06270.1| type 1 fimbriae regulatory protein [Escherichia coli B185]
          Length = 209

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/176 (28%), Positives = 73/176 (41%), Gaps = 9/176 (5%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L   +   L+ +V      + K   +R+  ++ L Y  GLR+SE LSL   ++     
Sbjct: 5   KFLTHHEINLLLQSV------KQKSCSSRDVCMILLAYFHGLRVSELLSLQLSDLELTTE 58

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVF 243
            + IQ  K     + PL      AI  + +        + N    LF    GKPL+   F
Sbjct: 59  KIYIQRIKNGFSTVHPLQKEEVIAITNWLNERNSLNVKHFNDNPWLFVSRTGKPLSRQRF 118

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
              +    +  GL +    H LRH+    L  NG D R IQ  LGH  +  T IYT
Sbjct: 119 YNIVSAAGKNAGLNIKVHPHMLRHACGYSLADNGVDTRLIQDYLGHRNIRHTVIYT 174


>gi|268609721|ref|ZP_06143448.1| integrase/recombinase, putative [Ruminococcus flavefaciens FD-1]
          Length = 414

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/272 (18%), Positives = 102/272 (37%), Gaps = 19/272 (6%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102
            R+F+  L+        I +  Q++Y  I  ++   + +    ++    ++ +K    YL
Sbjct: 143 VRRFIDHLS-----SAGITSFEQITYEHIEKYL--LQYKNNSIKTRGCMVNYLKKLFGYL 195

Query: 103 KKRKITTESNILNMRNLKKSNS--LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
               IT +     +  L+   S  +P    +++   L+     +          RN A+ 
Sbjct: 196 YGSGITDDDLREYLPKLRIPRSSGIPHTWTKEELTALL-----NAIDREDPAGKRNYAVF 250

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
            L    GLR  +  +L   NI  +  T+  I GK  +   +P+  +V  +I++Y      
Sbjct: 251 LLTIHTGLRAGDIRNLRLSNIDWESKTIHLIMGKTTQPIDLPMSDAVGWSIIDYLKNGRP 310

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL----STTAHTLRHSFATHLLS 275
           +   +      R               I +     G+          H+LR + A ++L+
Sbjct: 311 NTKSDHVFVRHRAPFTSIRGTAALDSAINRYLFKAGIAKKPGEHYGMHSLRSTLARNMLT 370

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +G  L +I   LGH    +T+IY   +  +  
Sbjct: 371 SGAALATISQTLGHEDSKSTEIYLKTSIDDLR 402


>gi|209518165|ref|ZP_03266993.1| integrase family protein [Burkholderia sp. H160]
 gi|209501372|gb|EEA01400.1| integrase family protein [Burkholderia sp. H160]
          Length = 570

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 69/334 (20%), Positives = 122/334 (36%), Gaps = 48/334 (14%)

Query: 16  KERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           KE +  +    +ERG  LS LT +    D   +  FL   +     +  +R  +  + R 
Sbjct: 246 KEAERLILWAIVERGRALSSLTTE----DAIAYRAFLRHPSPRARWVGPVRPRTSPDWRP 301

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F        +  RS+  +LS + +  ++L +++    +    ++   +  S    L+   
Sbjct: 302 F-----NGSLSARSVAHALSILGALFRWLIEQRYVLANPFAGVKV--REASGGNVLDTSH 354

Query: 134 ALTLVDNVLLHT-SHETKWIDARN-------SAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           A +  +  L+ T +   +W    +         +L   Y  GLR SE +  T  +I  D 
Sbjct: 355 AFSEGEWALVRTIADGLEWSYDWSAPAAQRVRFLLDFGYATGLRASELVGATLGHIETDA 414

Query: 186 S---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRG------- 232
                LR+ GKG K+  V L P    A+  Y       +       + P+          
Sbjct: 415 RGDHWLRVTGKGKKLARVALPPLAWDALAHYLAERELPIAPVRWRPETPVIGSLEADSEV 474

Query: 233 -----------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
                       R   L     +     L   L      + H +RH+ ATH L  G +L 
Sbjct: 475 AISSVRLWAVLRRFFLLAAQAIEADHPPLAEKL---RRASPHWMRHTHATHALGRGAELT 531

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +++  L H  +STT IY + +       + E + 
Sbjct: 532 TVRDNLRHASVSTTSIYLHSDEVKRARQIGEAFA 565


>gi|116619763|ref|YP_821919.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222925|gb|ABJ81634.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 251

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 102/254 (40%), Gaps = 28/254 (11%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RT 80
           L+ LE  R  S+ T ++Y    ++F              ++  QL    IR +     + 
Sbjct: 9   LEELE-RRNYSQATARAYVGAIQRFAEHFH---------RSPDQLGPEHIREYQLHLVQD 58

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQALTLVD 139
           +K+  R++   +S ++ F + + KR+   +     +   K     +P  L+  +   L+ 
Sbjct: 59  RKLHPRTVMIQMSALRFFFRKVLKRRFDRDD----LPLPKLLRRQIPTVLSRDEVARLI- 113

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR 198
                        + R+  IL  LY  G+R +E   L  ++I  ++  L I+ GKG K R
Sbjct: 114 ---------AAAGNLRHRTILMALYATGMRRAELCHLRIEDIDKERMVLHIRQGKGGKDR 164

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            VPL P +   +  +Y   P    L +   L      +P+         RQ  R  G+  
Sbjct: 165 EVPLPPKLLAQLRIHYRALPHRSAL-VFPSLQSRRPDQPMTEKAVWHACRQAARRAGITK 223

Query: 259 STTAHTLRHSFATH 272
           S   HTLRH  A+ 
Sbjct: 224 SVHPHTLRHYAASR 237


>gi|291514241|emb|CBK63451.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 409

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 60/287 (20%), Positives = 116/287 (40%), Gaps = 25/287 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K T  +Y    R    F+   +  + +    + +    + ++FI     + +   + + 
Sbjct: 130 AKGTYPAYIYTRRTLAEFIEKEFRTKDVAFGQMTEQFIHDYQSFI--LDEKGLAIDTCRH 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L+ +K   +   K          +    +     P+AL+ +    + D  L+   H   
Sbjct: 188 YLAIVKKVCRKAYKEGHADRCFFAHFSLPQPKEKTPKALSRESVEKIRD--LVIPEHRAS 245

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGDKIR-IVPLLPSV 206
            I AR+  +       G   ++A+S+T  N+  D++    L+ + K +++R  V LLP  
Sbjct: 246 HILARD--LFLFACYTGTAYADAVSVTRDNLFTDENGGLWLKYRRKKNELRACVKLLPEA 303

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              I +Y D        + +  LF  +    +     +R ++ L     +    T H  R
Sbjct: 304 LALIEKYRD--------DDRQTLFPMLHYPNM-----RRLMKCLAILADIKEDLTYHAGR 350

Query: 267 HSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           HSFA+ + L  G  + +I  +LGH  L TTQ+Y  V  K   + M +
Sbjct: 351 HSFASLITLEAGVPIETICKMLGHSNLQTTQVYAKVTPKKLFEDMDK 397


>gi|27365771|ref|NP_761299.1| Integrase [Vibrio vulnificus CMCP6]
 gi|27361920|gb|AAO10826.1| Integrase [Vibrio vulnificus CMCP6]
          Length = 402

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 108/274 (39%), Gaps = 29/274 (10%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           + ++ + + +++  +I+ ++++R        ++  + + +++      +       ++ N
Sbjct: 135 KHLSTKPLVEITAWDIQQWVAERSKAGRAPATISYAYNRLRAVFNRAVEWGFIDSHSLDN 194

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSH--ETKWIDARNSA--------------I 159
           ++  +  N   R L+  +   L++++    +   +         A              +
Sbjct: 195 VKIPRIDNKRIRYLSVSEEAALLESLKARDARLKDEALQRYGKRAQRLVSQRYVDFLEPL 254

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDL 216
           + L    G+R  E LSL   +I  +   L I+    K    R +PL  +V   +  ++  
Sbjct: 255 IVLALNTGMRKGEMLSLKWSHINMEDRYLTIRSENAKSKNKRTIPLNNTVYTMLQAWH-- 312

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
                  N    L     GKPL+   +Q     L +  G+  +   H LRH FA+ L+  
Sbjct: 313 -----EQNPDTELVFERNGKPLD--SYQYQWESLLKDAGIE-NFRFHDLRHHFASKLVMK 364

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
             DL  ++ +LGH  L  T  Y ++  ++    +
Sbjct: 365 EADLNVVRELLGHADLKMTLRYAHLAPEHKASAV 398


>gi|294664393|ref|ZP_06729752.1| site-specific recombinase, phage integrase family [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292605835|gb|EFF49127.1| site-specific recombinase, phage integrase family [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 405

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 53/308 (17%), Positives = 102/308 (33%), Gaps = 42/308 (13%)

Query: 39  YECDTRQFLIFLAFYTEEKITI------QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           Y    R+ L          + +        + Q+    +   I+ RR +     +  R L
Sbjct: 107 YRRWVRRELKRGDEAVNRILRVFGPLLGAPLPQIDRRAVEDIITARRHEGASVATTNRDL 166

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKK-SNSLPRALNEKQALTLV-------DNVLLH 144
           + IK  L    +  + T   +  ++  ++  +S+ R L+ ++   L             H
Sbjct: 167 AAIKGILTKALEWSLITTHPLERLKASREVGSSIVRYLSPEEGARLRAALQAREQERRAH 226

Query: 145 TSHETKWI--------------DARNSAI--LYLLYGCGLRISEALSLTPQNIMDDQSTL 188
                 W                  +  +  + L    GLR  E   LT  +       L
Sbjct: 227 RESGNTWCKERGGDGRPMWPAEGYTDHLMPMVLLALNTGLRRGELFGLTWSHANLTTKVL 286

Query: 189 RI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            +     K  + R VPL       ++ +               +F    G+  +    Q 
Sbjct: 287 TVAAGNAKSGRTRHVPLNAEALDVLIRWRRQA------GGAGLVFPNPAGRRFD--NIQT 338

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
              +L     L +    H LRHSFA+ L+  G DL +++ +LGH  +  T  Y ++    
Sbjct: 339 SWERLAAAAEL-VEFRLHDLRHSFASKLVMRGVDLNTVRELLGHADIKMTLRYAHLAPDK 397

Query: 306 GGDWMMEI 313
             + + ++
Sbjct: 398 LAEAVAKL 405


>gi|313683548|ref|YP_004061286.1| integrase family protein [Sulfuricurvum kujiense DSM 16994]
 gi|313156408|gb|ADR35086.1| integrase family protein [Sulfuricurvum kujiense DSM 16994]
          Length = 390

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/291 (17%), Positives = 118/291 (40%), Gaps = 28/291 (9%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           + +L  L      K     ++++  ++I+A+  +    KI      +    +K  L Y  
Sbjct: 105 KDYLNILEKDVLPKFGNMALKEIKVSDIKAWQVEMGKGKISQSRFNKKYYVVKRVLDYAI 164

Query: 104 KRKITTESNILNMRN-----LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           +      + I  ++      +K  ++  +    ++   ++ +     + + K   A   A
Sbjct: 165 ENGYIGSNPISLVKRSSKLFIKAKSNNSKYFTAEEVEKILSDRFEGANDKEKLSHAFLVA 224

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----------KGDKIRIVPLLPSVRK 208
            L++ +  G R  E ++L  ++I     T+ I+           K D  R+VP++  +  
Sbjct: 225 FLHVAFLTGARTGEIMALKWEDIDFSTKTITIRRSIRKGIISVTKTDTERVVPMVHRLID 284

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLN--PGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           A+L++ D      N + +       +G P +    +     + +   LG+P     +  R
Sbjct: 285 ALLKWKD------NTHREYVFPVPNKGTPYSEPRSIVDSKFKPMLERLGIPYKI-LYCTR 337

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT----NVNSKNGGDWMMEI 313
            +FA+  +  G  +  + + LGH  ++TTQ Y     N++++N    + ++
Sbjct: 338 ATFASIAVEKGISIPIVSTCLGHGNIATTQRYYIRMGNIDTENTRIELEKM 388


>gi|307564424|ref|ZP_07626965.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307346784|gb|EFN92080.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 431

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 107/283 (37%), Gaps = 16/283 (5%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSF 98
           Y  D +    F+     + I+I TI +  + E R F+ KR    +   ++  +L  +   
Sbjct: 132 YYSD-KNLRDFIENKGVQDISIVTITESLFEEYRFFLKKR---GLKASTVNTNLCWLSRL 187

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           +      +I   ++  N +  K+   + R L +   + L+   +     E          
Sbjct: 188 MFRAVSSRIIRCNSFENAKYEKEEKKI-RFLQKGDVMKLMAMTMNDRESELA------RL 240

Query: 159 ILYLLYGCGLRISEALSLTPQNIM---DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYY 214
           +       G+ I++  +L  ++I    D Q  +R  + K     IVPL P     I    
Sbjct: 241 MFVFSCFTGMAIADMETLQYRHIQTAADGQRYIRKERQKTKVEFIVPLHPVAEAIISHCR 300

Query: 215 DLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
           +    +            +  +P  +  V  + +  + +  G+    + H  RH+F T  
Sbjct: 301 NEQARNEEQQTVKEKGDSLVFQPHCSRSVMGKNLSIVGKACGIRQRLSYHMARHTFGTMC 360

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           LS G  + SI  ++GH  +S+TQIY  V        M  +  +
Sbjct: 361 LSAGIPIESIAKMMGHTSISSTQIYAQVTDNKISKDMDRLIAK 403


>gi|300820460|ref|ZP_07100612.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 119-7]
 gi|300527245|gb|EFK48314.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 119-7]
          Length = 206

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/198 (24%), Positives = 78/198 (39%), Gaps = 7/198 (3%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L + +   L+D      + ++     RN  ++ + +  G R SE L L   +I     
Sbjct: 4   KYLTQDEVYRLMD------AAQSMSFPERNRCLIMMAFIHGFRASELLDLRLSDIDASGK 57

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            L I+  K       PLLP     I  +        N      LF   + +P++   F  
Sbjct: 58  QLNIRRIKNGFSTTHPLLPDEYNLIKLWLKQRKLIENGVEGDWLFLSRKRRPISRQHFFS 117

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            IR+  +  GL +    H LRH+    L  NG D R +Q  LGH  +  T  YT  N+  
Sbjct: 118 IIREAGKRAGLAVKAHPHMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYTASNAAR 177

Query: 306 GGDWMMEIYDQTHPSITQ 323
                 +   +T PS ++
Sbjct: 178 FKGVWKKSLVKTVPSDSK 195


>gi|295087166|emb|CBK68689.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 420

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 100/260 (38%), Gaps = 19/260 (7%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           + I+++ +  +    +RA +   +   I   +     S +K+ LK     +  T      
Sbjct: 173 KAISVKLLEDIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEYLTVDISAK 232

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           ++ +        AL   +   LVD         T   D             GLR S+  S
Sbjct: 233 VKGITNIEKPRVALTMNEVQMLVD---------TPCKDDVLKRAFLFSILTGLRHSDIQS 283

Query: 176 LTPQN-IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           L  +     ++ T +      K +     P +++A+         D  L     +F G+ 
Sbjct: 284 LKWKQIQQTNKGTWQAVVVQQKTKRPDYKPVIQQALQLCGIRPNDDEAL-----VFEGLT 338

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
               +     R ++      G+    T H  RHS+A+ LL NG D+ +I+S++GH  + T
Sbjct: 339 ----DASWISRPLKVWIEASGIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKT 394

Query: 295 TQIYTNVNSKNGGDWMMEIY 314
           TQIYT++ ++        +Y
Sbjct: 395 TQIYTHLVNEQKEKAANTLY 414


>gi|260593190|ref|ZP_05858648.1| integrase [Prevotella veroralis F0319]
 gi|260534898|gb|EEX17515.1| integrase [Prevotella veroralis F0319]
          Length = 435

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 53/304 (17%), Positives = 104/304 (34%), Gaps = 20/304 (6%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
            T  +Y   +        F  ++ +    I  ++      +    + + +   ++   L 
Sbjct: 123 RTEGTYLNLSHADRNLHEFVKDKGVQDILIGAITKDLFEEYRFYLKKRGLKGTTINNYLC 182

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            +   +     + I   +   N +  K+  ++ R L +     L+   +  +  E     
Sbjct: 183 WLSRLMYRAVSQNIIRCNPFENAKYEKEDKNI-RYLQKYDVARLMTMRMNDSEAEQA--- 238

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRI-QGKGDKIRIVPLLPSVRKA 209
                +       GL I++  +L  ++I    D Q  +R  + K     +VPL P     
Sbjct: 239 ---RLMFIFSCFTGLAIADMETLQYKHIQTAADGQKYIRKERQKTKVEFVVPLHPIAETI 295

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGI-----RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           I         DL         +            +  V    +  + +  G+    + H 
Sbjct: 296 ISHCRKANHNDLTTGQDEQTMKEKGDGFVFHPDSSRSVMNSKLYIVGKACGISQRLSFHM 355

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
            RH+F T  LS G  + SI  ++GH  +S+TQIY  V      + M  +  +       K
Sbjct: 356 ARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDCKISEDMDRLIAKLF----SK 411

Query: 325 DKKN 328
           +KKN
Sbjct: 412 EKKN 415


>gi|166032543|ref|ZP_02235372.1| hypothetical protein DORFOR_02258 [Dorea formicigenerans ATCC
           27755]
 gi|166026900|gb|EDR45657.1| hypothetical protein DORFOR_02258 [Dorea formicigenerans ATCC
           27755]
          Length = 400

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 46/330 (13%), Positives = 104/330 (31%), Gaps = 59/330 (17%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
             K T++       +   +     +  I    ++ +    ++ F++      +   ++  
Sbjct: 79  YKKKTVK--MTTIYKNHSYYNSRVKNSIGKMYLQDIKTYHVQKFLNDLIDSGLAHGTVSN 136

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
               +          +   ++  + +   K+     R L  ++               T 
Sbjct: 137 IRFMLSDMFDKAVLSEYIRKNPCIGVEMPKEVKKERRVLTREEQEKFF----------TF 186

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK-------------- 196
                +  +L      G RI E L L  ++    +  + I                    
Sbjct: 187 ASSYIHINVLKFAVTTGCRIGEVLGLKWEDCDFGKREITINKTIHYSKASSPVEGSKFFY 246

Query: 197 --------IRIVPLLPSVRKAIL---------EYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
                    R++P+   V + +          + +    +  +   Q  +F    G P+ 
Sbjct: 247 TTAKTISSNRVIPMTDEVYEILQNQKIKQTEQKMWKRSIWKQHKEFQNLVFTCSDGSPVY 306

Query: 240 PGVFQRYIRQLRRYLG-LPLST--------------TAHTLRHSFATHLLSNGGDLRSIQ 284
                  I+     +  + +                T HTLRH++AT    NG D + +Q
Sbjct: 307 YYNVNSAIKDYVAKINVIEIELAKEEKREPKIFELFTCHTLRHTYATRCYENGVDQQVVQ 366

Query: 285 SILGHFRLS-TTQIYTNVNSKNGGDWMMEI 313
            +LGH  L+ TT +YT+V+ +   + + E+
Sbjct: 367 KLLGHSTLAMTTDLYTHVSEEKKKEEVAEL 396


>gi|159904432|ref|YP_001548094.1| integrase family protein [Methanococcus maripaludis C6]
 gi|159885925|gb|ABX00862.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 324

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 67/314 (21%), Positives = 132/314 (42%), Gaps = 25/314 (7%)

Query: 16  KERQNWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +E+  ++     ER    +   T+++   D     +FLAF  E +    ++    +    
Sbjct: 21  EEQNKYIMKFREEREFDNIKPSTIKN---DITSLKVFLAFCEEIEKEPYSLTTHDFVIFF 77

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLK---YLKKRKITTESNILNMRNLKKSNSLPRAL 129
             ++ RR   +  R+  R  + +K F +   Y   ++   ES I   R  K        +
Sbjct: 78  NMLNNRRNCTV--RTQNRYFNLLKVFYRLLKYDNFKEFERES-IERKRFSKFEKKHYDTI 134

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           N      ++  ++L  S        R++ I+ +L+  G R SEAL++  ++   ++   R
Sbjct: 135 NFDTYNRIIKEIILSNSRTR----LRDALIVRVLWETGCRRSEALNIRYKDCDFEKGRFR 190

Query: 190 IQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLN--PGVFQ 244
           I+  K  + R V +     + + +Y        + +   Q  + +  +   L+    VF+
Sbjct: 191 IRDTKTYEERTVVIAQETVEILRDYIKENIRRDSNDYIFQNEMIQNGKRVKLDWITNVFK 250

Query: 245 RYIRQLRRYLGLP--LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           + +R+L+    +        H+LRH  AT LL  G  +  ++ ILGH  L TT  Y++  
Sbjct: 251 KAVRKLKEEGVIQEGKRIVIHSLRHGRATDLLDKGVPIDVVKEILGHRSLETTLYYSH-- 308

Query: 303 SKNGGDWMMEIYDQ 316
           SK   D M++   +
Sbjct: 309 SKERKDGMLDNIQK 322


>gi|149006181|ref|ZP_01829893.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP18-BS74]
 gi|307127245|ref|YP_003879276.1| tyrosine recombinase XerC [Streptococcus pneumoniae 670-6B]
 gi|147761958|gb|EDK68920.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP18-BS74]
 gi|306484307|gb|ADM91176.1| tyrosine recombinase XerC [Streptococcus pneumoniae 670-6B]
 gi|332075092|gb|EGI85563.1| phage integrase family protein [Streptococcus pneumoniae GA17545]
          Length = 356

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 116/326 (35%), Gaps = 51/326 (15%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEE------KITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  +  +F  ++             I +  +  +S  ++ +FI   R     
Sbjct: 33  YSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDMESFILYLRERPLL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKR--------------------KITTESNIL 114
                 Q +   ++ R+LS + S  KYL +                     K   E+   
Sbjct: 93  NANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAA 152

Query: 115 NMRNLKKSNSLPR----ALN--EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
              N+K+   L       L   +++    + N  L + ++ K    R+ AI+ LL   G+
Sbjct: 153 RAENIKQKLFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNK---ERDLAIIALLLASGV 209

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQL 227
           R+SEA++L  +++      + +  KG K   V +    +  +  Y  +            
Sbjct: 210 RLSEAVNLDLRDLNLKMMVINVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKTDT 269

Query: 228 PLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
            LF  +       ++    ++ + +        +  T H LRH+ AT L         + 
Sbjct: 270 ALFLTLYRGVPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVS 327

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWM 310
             LGH     T +YT++ +    + +
Sbjct: 328 HQLGHASTQVTDLYTHIVNDEQKNAL 353


>gi|295107261|emb|CBL04804.1| Site-specific recombinase XerD [Gordonibacter pamelaeae 7-10-1-b]
          Length = 422

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/304 (17%), Positives = 110/304 (36%), Gaps = 40/304 (13%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           K T   Y    R             +    + +++  +++ ++           ++   L
Sbjct: 82  KSTHAGYCRHVRLL---------GDLGEIPVDRVTAQDVQLYVDSLVEDGYCPETVNHML 132

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             ++  L+    R + T  ++  +R  K    LPRAL+ ++   L+  +          I
Sbjct: 133 WTVRDTLELASFRMLRTPLDLRRIRAPKHDRPLPRALSAEEKNALLAAL--------PCI 184

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----------------GKGDK 196
                AI+ L    GLR  E  +L   N+  ++  +RI                      
Sbjct: 185 RGPLDAIIRLALFAGLRCGEICALRWTNVDFERRMVRITNAIGALPSSNGYLKGPKSPAG 244

Query: 197 IRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFR--GIRGKPLNPGVFQRYIRQLR 251
           +R +P+   + + +       +    D  +     +F    I G  + P    +  R   
Sbjct: 245 MRALPIADGLMEGLERRRAEQEARCRDAGVPFTDEIFVVGDIDGAFMVPRYANQLFRTFV 304

Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDW 309
           R   +       H LRH+FAT L+ +G + +++ + LGH   S T +IY + + +N    
Sbjct: 305 RTFNIGGGKCGLHRLRHTFATELIMSGVNPKTVSNWLGHTDPSFTLKIYVSSSPENLRAS 364

Query: 310 MMEI 313
           +  +
Sbjct: 365 VDAV 368


>gi|237733058|ref|ZP_04563539.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229383860|gb|EEO33951.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 286

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 112/295 (37%), Gaps = 40/295 (13%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N+  +L  E   S  T+  Y  D  +F  +              ++++   ++ +  +  
Sbjct: 13  NYKNHLIDEE-KSLATITKYIRDIEKFYQY-----------ADKKEVTKELVKLYKEELM 60

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL----PRALNEKQAL 135
            +     S+   L+ +  F +Y    +         ++ LK    +     + L++ +  
Sbjct: 61  -KSYKPTSINSMLAALNQFFEYNGWLE-------CKIKELKIQKRVFLEESKELSKDEYK 112

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            LV+          K  + R   +L  +   G+R+ E   +T Q + D  + +  +GK  
Sbjct: 113 RLVNA-------ARKQKNERLYVLLQAICSTGIRVGEHRYITVQALKDGYAQIYNKGK-- 163

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            +R +     +++ +L+Y      +        +F    G+PL+     + ++ L     
Sbjct: 164 -VREIFFSDDLKRILLKYCHKNKIE-----NGAIFVTRSGRPLDRSNIWKAMKDLCDDAK 217

Query: 256 LPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           +       H LRH FA    +   D+  +  +LGH  + TT+IYT  + +    +
Sbjct: 218 VERSKVYPHNLRHLFAVTYYNLKKDIARLADLLGHSSMDTTRIYTMSSGREFKRY 272


>gi|91209996|ref|YP_539982.1| putative phage integrase [Escherichia coli UTI89]
 gi|91071570|gb|ABE06451.1| putative phage integrase [Escherichia coli UTI89]
 gi|332342335|gb|AEE55669.1| phage integrase [Escherichia coli UMNK88]
          Length = 330

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 59/299 (19%), Positives = 113/299 (37%), Gaps = 39/299 (13%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-----EKITIQTIRQLSYTEIRA 73
           + W      +R LS+L    +  D R      ++         ++      Q++   +  
Sbjct: 49  KPWQAKPADQRRLSELLDAWWMLDGRNQAYGDSYRVRLGKVVREMGDPRASQMTRKFMLE 108

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + S++    +   S+ R L  + +     ++       + +  +R LK  N+    L++ 
Sbjct: 109 YRSEKLQAGLMPSSINRDLCVLSTMFTVLIEAEVFHNANPVRGIRKLKVQNTEMAFLSDD 168

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L++            ++     +  L    G R SEA  L  ++I+ ++ T     
Sbjct: 169 EIERLLE-----------RLEGDARRVAILCLSTGARWSEASELRGEHIVGNRVTF-FNT 216

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K  K R VP+  SV                     PL +  R   L    + ++   L+ 
Sbjct: 217 KNGKSRSVPVADSVV--------------------PLIKTRRTGLLYQVDYLKFREILQE 256

Query: 253 -YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               LP     H +RH+FATH + NGG++ ++Q ILGH  +  T  Y + +     D +
Sbjct: 257 VKPDLPKGQATHVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYAHFSPDFLQDAI 315


>gi|28870144|ref|NP_792763.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28853390|gb|AAO56458.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|330963541|gb|EGH63801.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. actinidiae str. M302091]
 gi|331015496|gb|EGH95552.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 321

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 63/295 (21%), Positives = 119/295 (40%), Gaps = 18/295 (6%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            ++ K  + +L  L      S+LT+     D    L          I       L    +
Sbjct: 20  PDVNKPLRLYLDRLAPS---SRLTMTYVLQDAADRLGMADV----DIHDIPWHTLQPGHV 72

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRAL 129
            A ++  R       +    ++ I+  +    +  + +   +L +R++K      L +  
Sbjct: 73  TALVATLREDDYAPNTTSLYVNAIRGVMNEAWRHDLISHDQLLKIRSIKPVSGTRLAKGR 132

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           N +   TL+  ++   + + +    R++AI+ +LYG G+R SE+++L    I   + +LR
Sbjct: 133 NIR--RTLIRELMEACAADPRPQGRRDAAIIAILYGSGMRKSESVNLDLAQIDFAERSLR 190

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNP-GVFQR 245
           + GKG+K  I        KA+ ++ +L    L       LF   R  RG  +    + + 
Sbjct: 191 VMGKGNKQLIKYAPEWAFKALNDWLELRRSCLQPGQGDDLFLFNRIRRGSHITRDRITKH 250

Query: 246 YIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            I  + +  G  + +    H  R SF T ++    DL   Q +  H  +STT  Y
Sbjct: 251 AIYFIAKQRGRQVGVDIMPHDFRRSFITRVIEE-FDLSIAQKLAHHTHISTTASY 304


>gi|319641879|ref|ZP_07996554.1| integrase [Bacteroides sp. 3_1_40A]
 gi|317386498|gb|EFV67402.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 382

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 59/289 (20%), Positives = 109/289 (37%), Gaps = 29/289 (10%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           LSK T+++++   + F+ FL     E+   Q++ +      R F+   R     + S+  
Sbjct: 88  LSKATVRAFKDSQKSFVRFLRASNNEECLPQSVDKDLIESYRLFM--LRDLGNKESSVSN 145

Query: 91  SLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            L  +   ++   + +   E     +++       +   AL   +   L+      +   
Sbjct: 146 RLRHLHQVIRKALQEQYIREDPFDFIDIETPTYERN---ALTSDELHKLL------SFRP 196

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPS 205
            K +D     I  L    GL  S+   L   ++    D +  + +     + R +  L  
Sbjct: 197 HKSVDNHCRLIFLLGCFTGLAFSDLKKLRMDDVYTLSDGRRYISLCRTKTQNRCIIPLLP 256

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS--TTAH 263
           + + IL        +     + P              F R IR++    GLP     T+H
Sbjct: 257 IAEEILSIVSGERTEGLFFREFP----------TNSHFNRKIREIILKAGLPPHTEATSH 306

Query: 264 TLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           T RH+FAT   L NG  +  +  +LGH  +STT++Y  V+       M 
Sbjct: 307 TARHTFATTICLENGLPIEIVSKMLGHRFISTTELYAKVSKSKIAREMQ 355


>gi|317505564|ref|ZP_07963475.1| phage integrase family site-specific recombinase [Prevotella
           salivae DSM 15606]
 gi|315663312|gb|EFV03068.1| phage integrase family site-specific recombinase [Prevotella
           salivae DSM 15606]
          Length = 268

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/300 (16%), Positives = 110/300 (36%), Gaps = 41/300 (13%)

Query: 18  RQNWLQNLEIERG-LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
            +N+   L   RG +S+ T+ +Y    +++        +  + +           + ++ 
Sbjct: 3   IENFEMYLR--RGNMSENTIAAYLYAVKEYYSRNKELNKRNLLV----------YKTYLI 50

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNEKQA 134
               +K   +++   +  I  +L Y+ K ++        ++++K      L   ++    
Sbjct: 51  ----EKFKPKTVNLRIQAINKYLDYMGKSRL-------RLKSVKVQQRSYLENVISNADY 99

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           + L     L      +W       ++  L   G R+SE + +  +++        I  KG
Sbjct: 100 IFL--KNKLRKEENQEW-----YFVVRFLAATGARVSELIQIKVEHVQI--GYFDIYTKG 150

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            KIR + +  S+     E+           +   LF    G+ +      + ++      
Sbjct: 151 GKIRRIYIPKSLSIEANEWLGKVN-----RMTGYLFLNRFGERITTRGIAQQLKNYAAKY 205

Query: 255 GLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GL       H+ RH FA + L    D+  +  ++GH  + TT+IY    +      + ++
Sbjct: 206 GLNEKVVYPHSFRHRFAKNFLEKFNDISLLADLMGHESIETTRIYLRRTASEQQAIVDKV 265


>gi|320105374|ref|YP_004180964.1| integrase family protein [Terriglobus saanensis SP1PR4]
 gi|319923895|gb|ADV80970.1| integrase family protein [Terriglobus saanensis SP1PR4]
          Length = 394

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 56/313 (17%), Positives = 116/313 (37%), Gaps = 35/313 (11%)

Query: 11  SFELLKERQNWLQNLEIER-GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           S+ + +   ++L+    E+   + LT + Y     + +         K  +Q +R ++  
Sbjct: 78  SYTVAELITHYLETELAEKANKTALTRKVYRYHLEKII----LPVWGKYRLQDVRTVA-- 131

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            I  ++  R        S  ++ +   +  ++  + +    + I  +R   K    P  L
Sbjct: 132 -IERWLESRPG---APSSKAKTRNIFSTLFRHGMRYEWVFSNPIELVRQGAKRLVEPDIL 187

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            E +  TL++            +D     ++ +    GLR  E   L  Q++     T+R
Sbjct: 188 TEAEIRTLIEG-----------LDEPARTMVLVAAVTGLRRGELFGLRWQDVDFQGLTIR 236

Query: 190 I-----------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           I                    +PL P + +A+ E+     F    +        +  +P 
Sbjct: 237 IACSLVDQVEGAPKTVTSRTSIPLSPELARALGEWKRTTHFTGESDWVFSSPASLGKQPY 296

Query: 239 NPGVF-QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ- 296
            PG+  +R+I    + LG+      HT R + AT L S G  +++ Q ++ H   S T  
Sbjct: 297 WPGMILRRHIAPAAQRLGINKKIGWHTFRRTTATLLFSAGASVKTTQELMRHASPSITLG 356

Query: 297 IYTNVNSKNGGDW 309
           +Y    +++    
Sbjct: 357 LYAQAVTEDKRAA 369


>gi|157369299|ref|YP_001477288.1| integrase family protein [Serratia proteamaculans 568]
 gi|157321063|gb|ABV40160.1| integrase family protein [Serratia proteamaculans 568]
          Length = 197

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 10/189 (5%)

Query: 124 SLP---RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
            LP   + L   +   L+       + E       ++ ++++ +  G R+SE   L   +
Sbjct: 3   KLPQHRKHLTRGEVGRLLLQAAAGRAPER------DTCLIWMGFIHGCRVSELTGLRLAD 56

Query: 181 IMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           +  D   L I + K       PL  + ++ +  + +   F  NL+ Q  LF   +G  L+
Sbjct: 57  LDMDDGCLYISRLKNGLSTTHPLETTEKRLLQRWLEKRQFCRNLDDQDWLFLSQKGYRLS 116

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                R +R+  R  GL +    H LRH+    L  NG D R IQ  LGH  +  T +YT
Sbjct: 117 RQRIFRMLREYGRRAGLEVEAHPHMLRHACGYALADNGADTRVIQDYLGHRNIQHTVLYT 176

Query: 300 NVNSKNGGD 308
             N+    D
Sbjct: 177 AANAGRFRD 185


>gi|218129569|ref|ZP_03458373.1| hypothetical protein BACEGG_01146 [Bacteroides eggerthii DSM 20697]
 gi|217988299|gb|EEC54622.1| hypothetical protein BACEGG_01146 [Bacteroides eggerthii DSM 20697]
          Length = 409

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 57/278 (20%), Positives = 112/278 (40%), Gaps = 26/278 (9%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
                +F+ +   +  + I    + +    + + F+     +     +++  L+ +K   
Sbjct: 141 RRTLGEFIQW--QFKTKDIAFGQLSEQFIHDYQNFV--MDVKGYAVDTVRHYLAILKKIC 196

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           +   K       +  N    K+S   PRAL+ +    + D  +      T  I  R+  +
Sbjct: 197 RIAYKEGYAERCHFANFTLPKQSERTPRALSREDFEKIRDVEIPAC--RTTHILVRD--L 252

Query: 160 LYLLYGCGLRISEALSLTPQN---IMDDQSTLRIQGKGDK-IRIVPLLPSVRKAILEYYD 215
                  G   ++A+S+T  N     D    L+ + K ++    V LLP     I +Y+D
Sbjct: 253 FLFACYTGTAYADAVSVTRDNLYTDDDGNLWLKYRRKKNELQASVKLLPEALALIEKYHD 312

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
                   + +  LF  +R   L     +++++ L    G+  +   H  RHSFA+ + L
Sbjct: 313 --------DNRPTLFPMVRHPNL-----RQHMKSLAVLAGVSSTLCYHQARHSFASLITL 359

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G  + +I  +LGH  ++TTQ+Y  V  K   + M +
Sbjct: 360 EAGVPIETISRMLGHSDITTTQVYARVIPKKLFEDMDK 397


>gi|226941042|ref|YP_002796116.1| integrase/recombinase protein [Laribacter hongkongensis HLHK9]
 gi|226715969|gb|ACO75107.1| Probable integrase/recombinase protein [Laribacter hongkongensis
           HLHK9]
          Length = 385

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 64/347 (18%), Positives = 116/347 (33%), Gaps = 52/347 (14%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           I + + +     WL+  E     S  TL +Y  + R+ L++     ++   +  + +   
Sbjct: 33  IAAEDDVAAIMTWLREFED----SPNTLINYRKEARRLLMWAGELRQK--GLVQLNREDL 86

Query: 69  TEIRAFISK----------RRTQK----------IGDRSLKRSLSGIKSFLKYLKKRKIT 108
            + + F++           R              +   S+K+SL+ + +  KYL      
Sbjct: 87  LDYQRFLANPQPASRWVGPRHPYGHPEWRPFNGPLKPSSIKQSLTILGAMFKYLCDAGYM 146

Query: 109 TESNILNMRNLKKSN----SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA--ILYL 162
             + +   R           L R L      T++D +        + I     A  +  L
Sbjct: 147 QANPLSLSRRKSAGVIANAPLERYLEINVWETVLDELDALPVDSEREIAHFERARWLFQL 206

Query: 163 LYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           LY  G R SE    T  +I         R+ GKG K   +P+   +  A+  Y D     
Sbjct: 207 LYLTGARRSEVARATMGDIFRRNGLWWWRVIGKGGKYGDIPVSEELLDALQRYRDHLGLA 266

Query: 221 L--NLNIQLPLFRGI----RGKPLNPGVFQRYIRQLRRY------------LGLPLSTTA 262
                    PL   +    +   L+P      ++Q+ +                    + 
Sbjct: 267 SLPATGEATPLVCRMIGRGQYSTLSPTAIYLIVKQVFQQVATVVRQRDPQLAAKLQHAST 326

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           H LRH+ A+H L  G  L  +   L H  + TT+ Y +       + 
Sbjct: 327 HWLRHTSASHQLDAGVPLLVVSQNLRHASIQTTRKYLHTEDDARHEA 373


>gi|255021792|ref|ZP_05293815.1| fimbriae recombinase [Acidithiobacillus caldus ATCC 51756]
 gi|254968768|gb|EET26307.1| fimbriae recombinase [Acidithiobacillus caldus ATCC 51756]
          Length = 250

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 78/207 (37%), Gaps = 12/207 (5%)

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
             +  +    +  + P +   K    L  + LL  + + +    R+  ++ L+Y  GLR+
Sbjct: 42  DPVAPVST--RPRTKPWSSERKHLTALEIDRLLAATKDNERTGLRDRCLILLMYRHGLRV 99

Query: 171 SEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNL------ 223
           +EA +L    +  +   L +   KG      PL     + +  + +     L        
Sbjct: 100 TEACALQLDQVDLESKVLHVTRLKGGLSTSHPLRNEEIRLLRSWLNERARWLRRWQKHDL 159

Query: 224 ---NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
                +  +F  +RG+ L+     + +R      GL L    H LRH+    L   G D 
Sbjct: 160 QTPPDRQAVFLSVRGQALSRNTVWQLLRAYGEAAGLSLPPHPHMLRHACGYALADQGTDT 219

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGG 307
           R IQ  LGH  +  T  YT  N +   
Sbjct: 220 RLIQDYLGHRNIQHTVRYTATNVRRFD 246


>gi|257063564|ref|YP_003143236.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
 gi|256791217|gb|ACV21887.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
          Length = 460

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 67/360 (18%), Positives = 129/360 (35%), Gaps = 68/360 (18%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
             WL  +  + G S+  L+ Y             Y  + +  + + ++  +++ A +   
Sbjct: 99  DKWLSWMRAKGGASQAVLRQYTTWL--------GYMSDVLGDKKLVEVKKSDVEAAMVAV 150

Query: 79  RTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALT 136
           +T + + + ++ +  +  K   +Y       T +   N+    K     R +L ++++  
Sbjct: 151 KTSRDLSNTTMNKMFAVTKRLFEYCVDSDWITRNPCRNIEAPAKDRVTSRHSLTDEESAV 210

Query: 137 LVDNVLLHTSH--------ETKWIDARNSA---------------ILYLLYGCGLRISEA 173
           L   + L  +         E +  D  N                  + ++   G+R  E 
Sbjct: 211 LRKRLDLAEADAISGYLEKENRQSDHNNLFGRSCVRGLSHISGIIAIRIMLATGMRRGEV 270

Query: 174 LSLTPQNIMDDQSTLRIQ------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
             LT   +  D S + ++                  R + +  +  + + E+       L
Sbjct: 271 CGLTWGAVDFDNSQIYVRQSLTASVEVKDPKTYSGRRSLFVEQNTMRHLKEWKTFQAKAL 330

Query: 222 NL----------NIQLPLFRGIRGKPLNPGVFQRYI--------RQLRRYLGLPLSTTAH 263
           ++            + P+     G  L+P    R+            R  LG P     H
Sbjct: 331 HMVMPDGTALTQTDETPVCCSDVGGWLDPTNLSRWWGGNKNKGREGFRDSLGFP-ELNMH 389

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTN---VNSKNGGDWMMEIYDQTHP 319
            LRH+ AT LL NG D++S+Q+ LGH R S T   Y +    N K   D M EI +++ P
Sbjct: 390 ELRHTQATMLLGNGIDVKSVQTRLGHSRASVTLDQYAHAIPANDKAAADLMGEIMNKSVP 449


>gi|150010322|ref|YP_001305065.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
 gi|149938746|gb|ABR45443.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
          Length = 383

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/293 (17%), Positives = 114/293 (38%), Gaps = 29/293 (9%)

Query: 29  RGLSKLTLQ-----SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI--SKRRTQ 81
           R  S   L+     ++     + +  L  Y  + +T++ + +        ++  +KR+  
Sbjct: 100 RHYSDHKLKTGQSAAFHIQIDKAIKHLIKYRGDTVTMKEVDKPYCLGFIDYLNNAKRKDG 159

Query: 82  KIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNM---RNLKKSNSLPRALNEKQALTL 137
           K+  + +       +   L    K +I   + I  +     +K   S    L   +   L
Sbjct: 160 KLMAKVTTAGYFRCLNCALNLAVKEEIIPYNPITKINPDDRIKIPESTREYLTVDEIKLL 219

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           + +  ++   +  ++ +           CGLR+ +  +LT  +++ D S  R++    K 
Sbjct: 220 IASKCINEPTKQAYLFSC---------FCGLRLGDIQALTWGDVILDGSQYRVKIVMKKT 270

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +    LP   +A+ ++        + +    L                 ++   +  G+ 
Sbjct: 271 QKTLYLPLSDEAL-KWMPKRDDAKDTDKIFHLP--------YATYINVVLKTWAQNSGIT 321

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            + T HT RH+FAT +L+ G DL +   +LGH ++ TT IY  +  K   + +
Sbjct: 322 KTITFHTARHTFATMMLTLGADLYTTSKLLGHTQVKTTTIYAKIVDKKKDEAV 374


>gi|227486813|ref|ZP_03917129.1| transposon integrase [Anaerococcus lactolyticus ATCC 51172]
 gi|297588612|ref|ZP_06947255.1| phage integrase family site-specific recombinase [Finegoldia magna
           ATCC 53516]
 gi|304440123|ref|ZP_07400014.1| phage integrase family site-specific recombinase [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|325849938|ref|ZP_08170977.1| site-specific recombinase, phage integrase family [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|227235198|gb|EEI85213.1| transposon integrase [Anaerococcus lactolyticus ATCC 51172]
 gi|297573985|gb|EFH92706.1| phage integrase family site-specific recombinase [Finegoldia magna
           ATCC 53516]
 gi|304371386|gb|EFM25001.1| phage integrase family site-specific recombinase [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|325479962|gb|EGC83045.1| site-specific recombinase, phage integrase family [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 411

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 60/335 (17%), Positives = 120/335 (35%), Gaps = 60/335 (17%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIG 84
           +++RGL   T ++Y    +QF+       E       +  +  +++R+F ++ +  Q + 
Sbjct: 80  KVKRGLKDNTFKNYIYMYQQFV-------EPTFGRIKLSDIKRSDVRSFYNRLKEDQGLM 132

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKS---NSLPRALNEKQALTLVDN 140
             ++    + +   L+     +    +   N ++ LK +    SL +     +   L + 
Sbjct: 133 VSTIDCVHTVLHQVLELAVDDEYIRFNPSDNALKELKVAYRNESLKKKAMTIEEQVLFEE 192

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--------G 192
            L ++    KW       I  ++   G+R+ E   L   ++  D   + +         G
Sbjct: 193 YLSNSDEYKKW-----YPIFIVMLWTGMRVGEVTGLQWDDLDFDNGLINVNRTLVYYSKG 247

Query: 193 KGDKIRIVPLLPSVR-------------------KAILEYYDLCPFDLNLNIQLPLFRGI 233
           KG   R     P                      + + + + +   D     +  +F   
Sbjct: 248 KGLNNRYAINTPKTVSGKRSIPMVQKVKDAFLMERELQKTFGIECCDSIDGFKDFVFLNR 307

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLP---------------LSTTAHTLRHSFATHLLSNGG 278
            GK  N G   + +R++ R   L                   + H  RH+F T L     
Sbjct: 308 FGKVHNNGTLNKALRRIVRDCNLSIMDKNKSSSNDILLVPHLSNHIFRHTFTTRLNEQNI 367

Query: 279 DLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMME 312
           + +++QSILGH  +STT  IY +       + M E
Sbjct: 368 NTKAMQSILGHSDISTTMDIYVDATEDFKIEQMGE 402


>gi|189461054|ref|ZP_03009839.1| hypothetical protein BACCOP_01701 [Bacteroides coprocola DSM 17136]
 gi|265753998|ref|ZP_06089353.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|189432144|gb|EDV01129.1| hypothetical protein BACCOP_01701 [Bacteroides coprocola DSM 17136]
 gi|263235712|gb|EEZ21236.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 376

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 92/257 (35%), Gaps = 29/257 (11%)

Query: 63  IRQLSYTEIRAFISKR------RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           + ++     + +I         + + I   +           L    + K    +    M
Sbjct: 132 LDRVDLAFCQGYIDYMLTTFRPKGKPIAASTRNTYYQIFNGALNAAVRAKRLLRNPFNEM 191

Query: 117 RN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
                 K   S+   +  ++   L+   +     +  ++ +           CGLRIS+ 
Sbjct: 192 EKSEKPKMPESVRSYMTIEEVRALIATPVQDGRVKNAYLFSC---------FCGLRISDI 242

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
           + L  +N+  D    R+     K +    LP   +A+ ++          +    L    
Sbjct: 243 VGLKWKNVFVDNGQYRLAVAMQKTKEPIYLPLSNEAL-KWMPEREDKAADDHVFSL---- 297

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
                 P    +Y++      G+    T HT RH+FAT +L+ G DL ++  +LGH  + 
Sbjct: 298 ------PSNINQYLKPWAEAAGITKRFTFHTARHTFATMMLTLGADLYTVSKLLGHTSVR 351

Query: 294 TTQIYTNVNSKNGGDWM 310
            TQ+Y  + ++   + +
Sbjct: 352 MTQVYAKIINQKKDEAV 368


>gi|327403680|ref|YP_004344518.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327319188|gb|AEA43680.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 413

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 53/292 (18%), Positives = 111/292 (38%), Gaps = 22/292 (7%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSLK 89
            S  T + Y+   +  L FL +      T   IR +++  I  +    RT ++  + +  
Sbjct: 128 FSAGTFERYKTSYKHTLDFLEWKY--STTDFDIRNINHAFITDYDFYLRTVRRCANNTTI 185

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           + +   +  ++   K     +   +N  ++K        L E++   +     +    + 
Sbjct: 186 KYIRNFQKVVRICLKNGWLAKDPFVNY-SVKLKEVTRTFLTEEEIEAIQKKKFVSGRLDQ 244

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSV 206
                    I       GL  ++   L   +I   +  +  +  + K         +   
Sbjct: 245 V------RDIFLFSCFTGLAYADVKELKKSDIQKVISAEKWIMTKRKKTDTVCNIPVLPP 298

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            + +++ Y   P   N +  LP+        ++      Y++++    G+    T H  R
Sbjct: 299 VEELIQKYKDDPRCENADCLLPV--------ISNQKMNSYLKEIADVCGIQKELTFHIAR 350

Query: 267 HSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           H+FAT + L+NG  + S+  +LGH  L TTQ Y  +  K  GD M  ++++ 
Sbjct: 351 HTFATTVTLTNGVSIESVSKMLGHTNLKTTQHYAKILDKKIGDDMRSLHEKY 402


>gi|331663926|ref|ZP_08364836.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA143]
 gi|331059725|gb|EGI31702.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA143]
          Length = 209

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 50/176 (28%), Positives = 73/176 (41%), Gaps = 9/176 (5%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L   +   L+ +V      + K   +R+  ++ L Y  GLR+SE LSL   ++     
Sbjct: 5   KFLTHHEINLLLQSV------KQKSCSSRDVCMILLAYFHGLRVSELLSLQLSDLELTTE 58

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVF 243
            + IQ  K     + PL      AI  + +        + N    LF    GKPL+   F
Sbjct: 59  KIYIQRIKNGFSTVHPLQKEEVIAITNWLNERNSINVKHFNDNPWLFVSRTGKPLSRQRF 118

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
              +    +  GL +    H LRH+    L  NG D R IQ  LGH  +  T IYT
Sbjct: 119 YNIVSAAGKNAGLNIKVHPHMLRHACGYSLADNGVDTRLIQDYLGHRNIRHTVIYT 174


>gi|149025512|ref|ZP_01836445.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP23-BS72]
 gi|147929384|gb|EDK80381.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP23-BS72]
          Length = 356

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 117/326 (35%), Gaps = 51/326 (15%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEE------KITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  +  +F  ++             I +  +  +S  ++ +FI   R     
Sbjct: 33  YSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDMESFILYLRERPLL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKR--------------------KITTESNIL 114
                 Q +   ++ R+LS + S  KYL +                     K   E+   
Sbjct: 93  NANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAA 152

Query: 115 NMRNLKKSNSLPR----ALN--EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
             +N+K+   L       L   +++    + N  L + ++ K    R+ AI+ LL   G+
Sbjct: 153 RAKNIKQKLFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNK---ERDLAIIALLLASGV 209

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQL 227
           R+SEA++L  +++      + +  KG K   V +    +  +  Y  +            
Sbjct: 210 RLSEAVNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKTDT 269

Query: 228 PLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
            LF  +       ++    ++ + +        +  T H LRH+ AT L         + 
Sbjct: 270 ALFLTLYRGVPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVS 327

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWM 310
             LGH     T +YT++ S    + +
Sbjct: 328 HQLGHASTQVTDLYTHIVSDEQKNAL 353


>gi|289664416|ref|ZP_06485997.1| putative integrase [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 314

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 58/289 (20%), Positives = 105/289 (36%), Gaps = 60/289 (20%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           R  S  T Q+Y    R F++                Q+   E+ AF+++  T+  +   +
Sbjct: 29  RHYSLRTEQAYVGWIRSFVLANCKRHPG--------QMGQIEVEAFLTELATRGQVSAGT 80

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++L+ +    + +   ++     + N+   K+   +P  L+  +   L+         
Sbjct: 81  QNQALAALLFLYREVLGVEL---PWMENLVRAKRPRRIPVVLSADEVARLL--------- 128

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
               ++     +  LL G G+R+ E L L  +++   +  + ++ GKG K R VPL   +
Sbjct: 129 --TMLEGSCRLMAGLLCGSGMRLLECLRLRIKDMDMVRGEIVVRDGKGGKDRRVPLPHIL 186

Query: 207 RKAILEYY------------------------------------DLCPFDLNLNIQLPLF 230
           R  ++                                           F        P  
Sbjct: 187 RGELMRQRERGLLLHAADLAEGAGRVFLPHALARKYPNADVEPGWQYLFLAARRPVDPRS 246

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
             +    L+  V QR ++  RR  G+    T HTLRH+FATHLL  G D
Sbjct: 247 GRVGRHHLSEEVLQRAVQAARRQAGITKLATCHTLRHAFATHLLEAGHD 295


>gi|154493767|ref|ZP_02033087.1| hypothetical protein PARMER_03109 [Parabacteroides merdae ATCC
           43184]
 gi|160890046|ref|ZP_02071049.1| hypothetical protein BACUNI_02486 [Bacteroides uniformis ATCC 8492]
 gi|154086517|gb|EDN85562.1| hypothetical protein PARMER_03109 [Parabacteroides merdae ATCC
           43184]
 gi|156860434|gb|EDO53865.1| hypothetical protein BACUNI_02486 [Bacteroides uniformis ATCC 8492]
          Length = 454

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 53/298 (17%), Positives = 114/298 (38%), Gaps = 30/298 (10%)

Query: 31  LSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSL 88
            S +T+  Y+   ++    + ++Y +E IT     +L+   IRAF    +T+  +   ++
Sbjct: 172 YSPVTINRYKNVVKKLQRLIPSYYGKEDITFH---ELTPEFIRAFDIYLKTEGGLCRNTI 228

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R +   K F      ++   ++     + +++  + P  L   +   ++         E
Sbjct: 229 VRYMKCFKKFTNMALAKEWMRKNPFYGYK-MEQDETDPVFLTYDELQAVMKKKFTIPRLE 287

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSL--------TPQNIMDDQSTLRIQGKGDKIRIV 200
                     I       GL  S+  +L           +    +  ++++ +     I 
Sbjct: 288 LV------RDIFVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRVKLEHRRKASSIS 341

Query: 201 PLLP-SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
            +    V  AILE Y   P  +     LP+    +           Y++++  + G+  +
Sbjct: 342 NIPLLPVPLAILEKYREHPICVKKGCCLPVMCNQKM--------NSYLKEIADFCGIKKN 393

Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            T H  RH+F T + L+N   L+ +  +LGH     TQ Y  V + +  + M  + ++
Sbjct: 394 LTTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNNVKER 451


>gi|253734957|ref|ZP_04869122.1| integrase [Staphylococcus aureus subsp. aureus TCH130]
 gi|253727139|gb|EES95868.1| integrase [Staphylococcus aureus subsp. aureus TCH130]
          Length = 392

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 129/352 (36%), Gaps = 71/352 (20%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI---- 75
            +L+ L+     S  T ++Y    ++F ++L     +KI  + +   ++ +   ++    
Sbjct: 51  RYLKYLDSV-NKSLNTKKTYAYALKKFFVYLES---KKICYKEVSFDNFVDFIRWMKTPF 106

Query: 76  -------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES----------------- 111
                    R+ + I  +++  +++ + +F  YL + K    +                 
Sbjct: 107 EYENVLSYHRKGKSISPKTINLTITVVSNFYDYLYRSKKLDVNFYDFIHTESKYSKKYKS 166

Query: 112 ----------NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
                      + N+  +K+       L   +   L+              + R+  ++ 
Sbjct: 167 FMHHVNKDYGMLKNILKVKEPKKKLEVLTNVEVKKLL----------GAANNIRDKFLIQ 216

Query: 162 LLYGCGLRISEALSLTPQNIMDD-QSTLRIQGKGDK----------IRIVPLLPSVRKAI 210
           LLY  GLRI E LSL   +I  D +   +I  K              R + +  S+    
Sbjct: 217 LLYETGLRIGEVLSLRIDDIKFDFRKGHQIVLKNRFNSNGTYLKTGERKIFISQSLIDLY 276

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            +Y      +L++     LF  I+G+     ++        ++L+    +  +   H  R
Sbjct: 277 DDYVYEIIDELSI-CSDYLFVKIKGRNVGEAMHYSDIYSLFKRLKHKTSI--NVHPHLFR 333

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQT 317
           H+ AT   +   D++ +Q  LGH  + TT  +Y +   ++  +   ++  Q 
Sbjct: 334 HTHATVFYNETKDIKQVQERLGHSNIQTTINLYVHPTEEDIREDWNKVKHQF 385


>gi|253569702|ref|ZP_04847111.1| integrase [Bacteroides sp. 1_1_6]
 gi|251840083|gb|EES68165.1| integrase [Bacteroides sp. 1_1_6]
          Length = 285

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 112/287 (39%), Gaps = 34/287 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            L+K T+ SY    + FL       ++ +       L+Y   + ++     +    +++ 
Sbjct: 31  NLAKNTVTSYVWTVQYFLNHYGEVNKKNL-------LTY---KGYLV----ENFKPQTVN 76

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             L GI  +L++ K+ K+        ++ +K        L  +  ++  D   L T  + 
Sbjct: 77  LRLQGINKYLEFTKQEKL-------KVKFVKVQQK--NFL--ENVISDADYKFLKTRLKA 125

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              +     I++ +   G R+SE L +  +++      L +  KG KIR + +  ++R  
Sbjct: 126 DGYNEW-YFIVWFMAATGARVSELLHIKAEHVQV--GHLDLYSKGGKIRRLYIPKNLRTE 182

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHS 268
             ++           I   +F    G+ +      + ++      G+       H+ RH 
Sbjct: 183 ATKWLKEKSL-----ISGYIFLNRFGERITTRGIAQQLKHFAGKYGMNKEVVYPHSFRHR 237

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           FA + L    DL  +  ++GH  + TT+IY    +      + ++ +
Sbjct: 238 FAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDKVVN 284


>gi|268796563|ref|YP_003310958.1| integrase [Sebaldella termitidis ATCC 33386]
 gi|268616661|gb|ACZ11027.1| integrase family protein [Sebaldella termitidis ATCC 33386]
          Length = 271

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 64/301 (21%), Positives = 114/301 (37%), Gaps = 31/301 (10%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           + E Q + Q L I   LS+ T+  Y  D  QF+      ++E      I +    + + +
Sbjct: 1   MTELQEFKQEL-IHNELSQATISRYMTDLNQFIDKTGISSKE-----DINKAKLLDYKDY 54

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +           S    L GI  FL ++    +  +      +N+     L   L   + 
Sbjct: 55  LI----NNFKPASCTIKLIGINKFLDFIGLDNLKVKLPKKQKKNV-----LEDMLTVAEY 105

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+           K    +   I+  L   G+RISE   +T + +  + ++++ +GK 
Sbjct: 106 ERLLKY-------ADKLGKEKMYYIIMTLANTGIRISELEFITVEALKKESTSIKNKGK- 157

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
             IR + L   + K + EY        N     P+F    G P++     R ++ +    
Sbjct: 158 --IREIILPKKLIKDLKEYC-----KKNNITNGPVFISKAGNPIDITYIHRELKTISGQA 210

Query: 255 GLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            +      AH  RH FA   +    +  S+  ILGH  L TT+IYT    +     +  +
Sbjct: 211 RIKKSKVHAHAFRHLFAIQYMKRNNNALSLADILGHSSLETTRIYTQQTKEQHQKSIDNL 270

Query: 314 Y 314
           +
Sbjct: 271 F 271


>gi|257790681|ref|YP_003181287.1| integrase family protein [Eggerthella lenta DSM 2243]
 gi|257474578|gb|ACV54898.1| integrase family protein [Eggerthella lenta DSM 2243]
          Length = 438

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 55/304 (18%), Positives = 111/304 (36%), Gaps = 40/304 (13%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           K T   Y    R             +    + +++  +++ ++           ++   L
Sbjct: 98  KSTHAGYCRHVRLL---------GDLGEIPVDRVTAQDVQLYVDSLVEDGYCSETVNHML 148

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             ++  L+    R +    ++  +R  K    LPRAL+ ++   L+  +          I
Sbjct: 149 WTVRDTLELASFRMLRPPLDLRRIRAPKHDRPLPRALSAEEKNALLAAL--------PCI 200

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----------------GKGDK 196
                AI+ L    GLR  E  +L   N+  ++ T+RI                      
Sbjct: 201 RGPLDAIVRLALFAGLRCGEICALRWANVDLNRRTVRITSAIGTLPSSNGYLKGPKSPAG 260

Query: 197 IRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFR--GIRGKPLNPGVFQRYIRQLR 251
           +R +P+   + + +       +    D  +     +F    I G  + P    +  R   
Sbjct: 261 VRALPIADGLMEGLERRRAEQEARCRDAGVPFTDDIFVVGDIDGAFMVPRYANQLFRTFV 320

Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDW 309
           R  G+       H LRH+FAT L+ +G + +++ + LGH   S T +IY + + +N    
Sbjct: 321 RTFGIGGGKCGLHRLRHTFATELIMSGVNPKTVSNWLGHTDPSFTLRIYVSSSPENLRAS 380

Query: 310 MMEI 313
           +  +
Sbjct: 381 VDAV 384


>gi|169824629|ref|YP_001692240.1| putative transposon integrase [Finegoldia magna ATCC 29328]
 gi|167831434|dbj|BAG08350.1| putative transposon integrase [Finegoldia magna ATCC 29328]
          Length = 411

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 121/336 (36%), Gaps = 62/336 (18%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIG 84
           +++RGL   T ++Y    +QF+       E       +  +  +++R+F ++ +  Q + 
Sbjct: 80  KVKRGLKDNTFKNYIYMYQQFV-------EPTFGRIKLSDIKRSDVRSFYNRLKEDQGLM 132

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNS----LPRALNEKQALTLVD 139
             ++    + +   L+     +    +   N ++ LK +        +A+  ++   L +
Sbjct: 133 VSTIDCVHTVLHQVLELAVDDEYIRFNPSDNALKELKVAYRNESPKKKAMTIEE-QVLFE 191

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------- 191
             L ++    KW       I  ++   G+R+ E   L   ++  D   + +         
Sbjct: 192 EYLSNSDEYKKW-----YPIFIVMLWTGMRVGEVTGLQWDDLDFDNGLINVNRTLVYYSK 246

Query: 192 GKGDKIRIVPLLPSVR-------------------KAILEYYDLCPFDLNLNIQLPLFRG 232
           GKG   R     P                      + + + + +   D     +  +F  
Sbjct: 247 GKGLNNRYAINTPKTASGKRSIPMVQKVKDAFLMERELQKTFGIECCDSIDGFKDFVFLN 306

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLP---------------LSTTAHTLRHSFATHLLSNG 277
             GK  N G   + +R++ R   L                   + H  RH+F T L    
Sbjct: 307 RFGKVHNNGTLNKALRRIVRDCNLSIMDKNKSSSNDILLVPHLSNHIFRHTFTTRLNEQN 366

Query: 278 GDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMME 312
            + +++QSILGH  +STT  IY +       + M E
Sbjct: 367 INTKAMQSILGHSDISTTMDIYVDATEDFKIEQMGE 402


>gi|319654996|ref|ZP_08009068.1| hypothetical protein HMPREF1013_05690 [Bacillus sp. 2_A_57_CT2]
 gi|317393313|gb|EFV74079.1| hypothetical protein HMPREF1013_05690 [Bacillus sp. 2_A_57_CT2]
          Length = 370

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 71/347 (20%), Positives = 137/347 (39%), Gaps = 51/347 (14%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE------KITIQ 61
           E++  E+ +  + ++ +    R  S LTL +Y  D ++F  +L     +       I++ 
Sbjct: 15  EVLLKEMPEFVEKYVDDKLDIR--SPLTLFNYVRDFKEFFGWLIAEGIDTCDSIKDISVG 72

Query: 62  TIRQLSYTE---IRAFISKRR---------TQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           T+  LS  +      FIS+++         T+KI  +++ R  S ++S  KYL      +
Sbjct: 73  TLEFLSLDDANNYFKFISRKKYKVSKKDNETKKIDTKTVNRHKSSLRSLFKYLTVEAEVS 132

Query: 110 E-------SNILNMRNLKKSNSL---PRALNEKQALTLVDNVLLH-------------TS 146
                   + +  +   K S +L    + + +K  +   D   L                
Sbjct: 133 AGKPYFERNVMEKIPIKKVSETLNERAKKITDKIFIEDKDVDFLEYVQNEYAASLSPAQM 192

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
              K    R+ AIL L  G G+R++E  +L  ++I      + +  KG K   V + PS 
Sbjct: 193 RYFKRDKERDFAILSLFLGSGIRVNELTNLRIKDIDFSAKEISVIRKGGKKDTVSITPSS 252

Query: 207 RKAILEYYDLC--PFDLNLNIQLPLFRGI---RGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            + +  Y ++    +         +F        +PL     +  + +  +        +
Sbjct: 253 LEDVEAYLEVRKEKYKAGDGENEYIFVKNLKGTPQPLTNRAVEDIVYKYTK--SFDKRMS 310

Query: 262 AHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            H LRH++AT+L    GGD+  I + LGH +   + +Y N   +   
Sbjct: 311 PHKLRHTYATNLAEQTGGDIPLIMNQLGHTQSDISLLYINTTREKQR 357


>gi|218263862|ref|ZP_03477831.1| hypothetical protein PRABACTJOHN_03521 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222461|gb|EEC95111.1| hypothetical protein PRABACTJOHN_03521 [Parabacteroides johnsonii
           DSM 18315]
          Length = 386

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 60/317 (18%), Positives = 109/317 (34%), Gaps = 44/317 (13%)

Query: 15  LKERQNWLQNLE---IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            KE   +L+       ER  +  +  ++    R  L +L  Y +EK T + +        
Sbjct: 86  FKENTPFLEYYRKMVEERRKNPESKGNWGNW-RSCLRYLEIYCDEKTTFRDVTPEFVMGF 144

Query: 72  RAFISK-----------RRT----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           + F+             RR     Q +   S     + +++ +      ++   + +  +
Sbjct: 145 KEFLEHVEKDTHKRVGPRRERDTFQGLSQNSKVSYFNKLRACINQAYDERVIPINPLRGI 204

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              K +      L   +   L        +   ++   + + +   L   G+R S+   L
Sbjct: 205 EGFKAAEVKRDYLTLDEVRQL-------AATPCRYPILKRAFLFSCL--TGIRKSDIQKL 255

Query: 177 TPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
           T   +       RI   Q K      + + P   K + E           N    +F G 
Sbjct: 256 TWGEVQKFGEYTRIVFKQKKTGGQEYLDITPQAEKYLGE---------RGNPDDLVFTGF 306

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
                     QR         G+  + T H  RH+FA  +L  G D+ ++  +LGH  L+
Sbjct: 307 TYGAWTSLELQR----WSLAAGMNKNLTFHCGRHTFAILMLDLGADIYTVSKLLGHKELA 362

Query: 294 TTQIYTNVNSKNGGDWM 310
           TTQIY  V  KN  + +
Sbjct: 363 TTQIYAKVLDKNKQNAV 379


>gi|257870780|ref|ZP_05650433.1| phage integrase [Enterococcus gallinarum EG2]
 gi|257804944|gb|EEV33766.1| phage integrase [Enterococcus gallinarum EG2]
          Length = 380

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 47/307 (15%), Positives = 101/307 (32%), Gaps = 48/307 (15%)

Query: 36  LQSYECDTR-----QFLIFLAFYTEEKITIQTIRQLSYT----EIRAFISKRRTQKIGDR 86
           + +Y    +         F   +         + ++S +    ++  +    +      +
Sbjct: 77  IDNYRTRVKPSSVAVAQRFCKNHILPAFGELRLDKISVSYCQKQVNEWHKTLKQYGFLRK 136

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV--DNVLLH 144
           +            K+    ++  ++ +           LPR + E+Q L     D + L 
Sbjct: 137 TTA-------QIFKFGVAMEVCKDNPMSK-------TLLPRKIEEEQPLKFYTKDQLQLF 182

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM----------------DDQSTL 188
             +  +    +      LL   G+R SEAL L  ++I                  +Q  L
Sbjct: 183 LKNTKENNSVKLYTFFRLLAYTGMRKSEALGLQWEDIDYFNKTITIGKTIAQDEFNQVVL 242

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL------NLNIQLPLFRGIRGKPLNPGV 242
           ++    +  R + L     K +  +       +        + +  LF     K   P V
Sbjct: 243 QVPKTKNSSRTIQLDDFTLKQLRIWQQEQMKIMILYGYNTNSPKQFLFTTNTNKLYYPQV 302

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNV 301
              ++  + +   +    T H  RH+  + L  +G  ++ +Q  LGH  + TT  IY +V
Sbjct: 303 VNDWLDWIYKKTPMEPQITPHGFRHTHCSLLFESGASIKEVQERLGHKDIKTTMNIYAHV 362

Query: 302 NSKNGGD 308
             ++   
Sbjct: 363 TPQSIKK 369


>gi|224024153|ref|ZP_03642519.1| hypothetical protein BACCOPRO_00876 [Bacteroides coprophilus DSM
           18228]
 gi|224017375|gb|EEF75387.1| hypothetical protein BACCOPRO_00876 [Bacteroides coprophilus DSM
           18228]
          Length = 418

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 63/297 (21%), Positives = 103/297 (34%), Gaps = 27/297 (9%)

Query: 31  LSKLTLQSYECDTRQFLIF-LAFYTEEKITIQTIRQLSYTEIRAFIS-KRRTQKIGDRSL 88
           L   TL+SY    R    F +  Y      I  I +    E  A++    R       + 
Sbjct: 126 LRPSTLKSYTATRRHLAAFVMLRYHISDFDITAIDRNFVNEFYAYLQGYLRQDNKRQCTE 185

Query: 89  KRSLSGI---KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
             +L  +   +  L      +    +    M   K+  +    L E++   + D  L   
Sbjct: 186 NGALKHMQRFRKLLDMACSNEWIARNPADGMHWEKR-KTERGFLTEEELKRIADAQL--- 241

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIV-P 201
                   +    I       G    +   LT  NI   +D    L         R   P
Sbjct: 242 ----TPALSVLRDIFLFSVYTGTSFVDMTMLTDNNIVVGIDHSLWLNFNRTKTGQRCSIP 297

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           LL    + +  Y +        + Q  LF           V  R ++ + R   +  + T
Sbjct: 298 LLEPALRILDRYENYR----RASPQARLFPVP-----TNQVTNRDLKIIARAAHVDKNIT 348

Query: 262 AHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            H  RH+FAT + LSNG  L ++  +LGH  ++TTQIY  +  K   D M ++ ++ 
Sbjct: 349 FHVARHTFATTITLSNGIPLETVSRMLGHASIATTQIYAKIVDKKVLDDMAQLRNRY 405


>gi|160944688|ref|ZP_02091915.1| hypothetical protein FAEPRAM212_02202 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443872|gb|EDP20876.1| hypothetical protein FAEPRAM212_02202 [Faecalibacterium prausnitzii
           M21/2]
          Length = 416

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 63/321 (19%), Positives = 113/321 (35%), Gaps = 51/321 (15%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSL 88
           GL + T  +Y     +F+        ++I +  ++ +  ++IR++ +   R  K+   +L
Sbjct: 90  GLKEHTFANYVYMYNRFVR-------DEIGMMKLKDIRKSDIRSYYNGIVRNGKMALNTL 142

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           +   + +          +    +    +    K+        ++ ALTL          +
Sbjct: 143 ETIQNVLHQVFAVAVDDEYIRVNPTDGVLTAIKAAHQYET-PKRHALTLPQQQAFLNFIK 201

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---------------- 192
                     +   + G G RISE + L   +I  +   + IQ                 
Sbjct: 202 KTPKFQHWLPMFTFMLGTGCRISETVGLCWSDIDFESGFITIQHNLVYHDHEVGGCYFTM 261

Query: 193 ----KGDKIRIVPLLPSVRKAI------LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
                    R +P+LP VRKA+       +  +L        I   +F    G+P NP  
Sbjct: 262 STPKTAAGKRAIPILPEVRKALEQERTNQQELELVCEYEIDGISDFVFLNRFGQPQNPQT 321

Query: 243 FQRYIRQLRRYLG---------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
             R I+++                    L    + H LRH+F T L  N  +L+ IQ I+
Sbjct: 322 VNRAIKRISVAHNEAELEKAEKEKREPQLLPPFSCHNLRHTFCTRLCENETNLKIIQDIM 381

Query: 288 GHFRLSTTQ-IYTNVNSKNGG 307
           GH  +STT  IY     +   
Sbjct: 382 GHRDISTTMEIYAEATKEAKA 402


>gi|291551262|emb|CBL27524.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 413

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 61/342 (17%), Positives = 119/342 (34%), Gaps = 59/342 (17%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + + +  +  L + T  +Y     +F+             + + ++ YT+++ F      
Sbjct: 81  FDRYMSTKHNLRETTRSNYLYMFNRFIR-------ADFGNKFLTEVKYTDVKLFYYHLLN 133

Query: 81  QK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-----RNLKKSNSLPRALNEKQA 134
           +K I   +L    + +        +  I  ++    +     RN  K+  +  AL  +Q 
Sbjct: 134 EKDIAINTLDTIHTVLHPIFDMAVRDDIIRKNPTDGVLAEIKRNSGKNKGIRHALTIEQQ 193

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-- 192
              +D +       T         +   L G G+RI E   LT  ++   +  + +    
Sbjct: 194 QAFMDTI------RTFPEYYHWYPLFATLLGTGMRIGECTGLTWNDVDFKRRCISVNHAA 247

Query: 193 -----------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLF 230
                                IR +P++ +V  A+   YD    D     +L      +F
Sbjct: 248 TYYTRNGVAGFAISRPKTEAGIRQIPMMDAVYNALKNEYDRQKKDGFCTYELDGVSGFIF 307

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLG---------------LPLSTTAHTLRHSFATHLLS 275
               G   NP      I+++                    +    + H LRH+F + L  
Sbjct: 308 SNKLGLLHNPHCVNLAIKRIYEAHNAREIIDAKREHREPIIIPHFSCHVLRHTFCSRLCE 367

Query: 276 NGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQ 316
           +  +++ IQ I+GH  + TT  IYT VN     D + E+  +
Sbjct: 368 SDMNVKVIQEIMGHKNVETTLDIYTEVNYNKKKDSLEELASK 409


>gi|114762955|ref|ZP_01442385.1| Phage integrase [Pelagibaca bermudensis HTCC2601]
 gi|114544279|gb|EAU47287.1| Phage integrase [Roseovarius sp. HTCC2601]
          Length = 316

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 54/325 (16%), Positives = 123/325 (37%), Gaps = 45/325 (13%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERG-LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           +P+ ++  +    ++WL+    ER  L + TL++Y    R        + E KI    + 
Sbjct: 1   MPQTMTKTVTDACESWLKTC--ERNQLERSTLKAYRSHAR-------VHIEPKIGDLLLG 51

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            LS  ++R F+ +     I    +++ +  +++ L    +R+        +++  ++  S
Sbjct: 52  DLSRGQVRDFMHELLDDGISQALVRKVMVSLRAVLSEAVEREWIEHDVATDVKMRRRRRS 111

Query: 125 ------LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
                 +P    + +   +V+N               + A+       G+RISE   LT 
Sbjct: 112 ESDERVIP---TKDEIRLIVENAPAS-----------HRAMFIAAIFTGMRISELRGLTW 157

Query: 179 QNIMDDQSTLRIQGK--------GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
            N+  D+  + ++ +          K R       +   + +        + + +Q  +F
Sbjct: 158 DNVDLDRGLVHVRQRADEHCVLGKPKSRAGHRDIPMTPLVRDTLAQWQRTVPVTVQNLVF 217

Query: 231 RG-IRGKPLNPGVFQRYIRQLRRYLGL-----PLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
                       ++ R  + +    G+           H LRH+ A+  +  G + + IQ
Sbjct: 218 PNGAGKIQNYSNIYNRVFKPMLVANGIVDAAGEPKFGLHALRHAAASLFIEQGWNPKKIQ 277

Query: 285 SILGHFRLSTTQ-IYTNVNSKNGGD 308
           ++LGH  ++ T  +Y ++      D
Sbjct: 278 TLLGHASITMTMDVYGHLFENAEED 302


>gi|225018072|ref|ZP_03707264.1| hypothetical protein CLOSTMETH_02009 [Clostridium methylpentosum
           DSM 5476]
 gi|224949069|gb|EEG30278.1| hypothetical protein CLOSTMETH_02009 [Clostridium methylpentosum
           DSM 5476]
          Length = 462

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 98/268 (36%), Gaps = 31/268 (11%)

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +  +++      + S L    + +I   +    ++  K      R L+EKQ   L+ 
Sbjct: 202 DRGLAAKTINSHHRLLSSMLNTAVQWQIIFSNPCDRVKPPKLERKEARYLDEKQTAQLI- 260

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------- 191
             L     +          ++ LL   G+R  E   L   +   +   L IQ        
Sbjct: 261 TCLQREPEQ-------YQTMVLLLIYTGMRRGELCGLEWPDFDMEHKLLYIQRESLYLPD 313

Query: 192 --------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-----FRGIRGKPL 238
                         R++ L     K ++++      +        +     F    GKP+
Sbjct: 314 RGIFEDTTKTYSSTRVIKLSDEAVKLLIQHKFAQNAERAKLGDAWVDTGKIFTTCTGKPI 373

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL-STTQI 297
           +P     +  +  +   LP   + H+LRH+ AT L++NG +L ++   LGH    +TT++
Sbjct: 374 HPDTLTTWFHKFVQKNDLP-PVSVHSLRHTNATLLIANGVNLTTVAGRLGHADTGTTTKV 432

Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           Y +            I +  +P+  +++
Sbjct: 433 YAHAIKTADEMAAETIQNILNPAKKEEN 460


>gi|300727851|ref|ZP_07061231.1| phage integrase family protein [Prevotella bryantii B14]
 gi|299774899|gb|EFI71511.1| phage integrase family protein [Prevotella bryantii B14]
          Length = 405

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 119/326 (36%), Gaps = 50/326 (15%)

Query: 11  SFELLKERQN------WLQNLEIERGL--SKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
           S+E+L++ +       + + +  ER    S+ T  ++    R    +L  Y +E  T   
Sbjct: 81  SYEVLQQYKTNTYFLPYYRKMCKERFRTDSQGTWGNWRSCLR----YLEAYCDESTTFSE 136

Query: 63  IRQLSYTEIRAFIS-------KRRTQ-------KIGDRSLKRSLSGIKSFLKYLKKRKIT 108
           I        + F+        KR+ +        +   S     + +K+ L    +  I 
Sbjct: 137 ITPEWVKGFKDFLDNVEKDSCKRKDREKVSVFNGLSLNSKHSYFNKLKACLNAAFEEHII 196

Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
             + +  ++  K+       L+ ++ + L        +   ++   +N+ +       GL
Sbjct: 197 VVNPLRGVKGFKQDEVAREHLSWEEVVKL-------DATPCRYPVLKNAFLFSCF--TGL 247

Query: 169 RISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           R S+   LT   +       RI   Q K      + +     K +               
Sbjct: 248 RKSDIERLTWGEVQKFDGFTRIVWKQKKTGGQEYLDIPEQAVKYL--------GTPQEEP 299

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
             P+F+G     LN  +    +R+      +    T H  RH+FA  +L+ G D+ ++  
Sbjct: 300 DTPVFKGF----LNGALLSLELRRWMLAASINKDITYHCSRHTFAVLMLNFGADIYTVSK 355

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +LGH  ++TTQIY  V  +     +M
Sbjct: 356 MLGHREIATTQIYARVLDEKKRAAIM 381


>gi|229099925|ref|ZP_04230847.1| Integrase-recombinase [Bacillus cereus Rock3-29]
 gi|228683470|gb|EEL37426.1| Integrase-recombinase [Bacillus cereus Rock3-29]
          Length = 390

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 121/313 (38%), Gaps = 34/313 (10%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE--------KITIQTIRQLSYTEIRAF 74
           ++++ ++   + T +SY  +   F   +  + EE        +     ++ L    IR +
Sbjct: 75  KDMDEKKNRKEDTKKSYVSEILSFCQCMVQHAEEFELNGEEVQQNDSLLKTLKPWHIRKY 134

Query: 75  ISKRRT-------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--NLKKSNSL 125
            +  +              +L +    I+SFLK+L             ++  N+ + +  
Sbjct: 135 NAWLKQVENGRNGDTYAVATLSKKSVLIRSFLKHLHVFAYIERPLHEELQRANVNEQDRP 194

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDD 184
            R L+  + + ++           +     N  IL  L   G RI E  +   ++   D 
Sbjct: 195 NRDLSYDEVMKILGFY-------KEQRHLVNYTILLALASTGARIQELCTARVKDLHYDG 247

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGV 242
           +  L++ GKGDK+R + +   + + I E      F   L+   + PLF   RG   NP  
Sbjct: 248 KYWLKVTGKGDKVRELFIPEHLFQCISEMRRRRGFQTILDRGDECPLFVNQRGNFYNPKT 307

Query: 243 FQRYIRQLRRYLGLPL------STTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTT 295
               +  + +   L          TAHT RH+FA   +  G  DL  +   LGH  + TT
Sbjct: 308 LSNQVTDMIKKTNLDFLKYRENPVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTT 367

Query: 296 QIYTNVNSKNGGD 308
           +IY   + K   +
Sbjct: 368 KIYLEKHMKRKNN 380


>gi|167464569|ref|ZP_02329658.1| integrase family protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 321

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 60/291 (20%), Positives = 108/291 (37%), Gaps = 39/291 (13%)

Query: 57  KITIQTIRQL---SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI 113
            I ++ + +L   S    +AF++  +       ++ R LS ++S   YL +         
Sbjct: 27  GIPLEDLERLHTDSIDNFKAFLATHKNHLNKKITITRKLSSLRSLFHYLSQIAEDENFYP 86

Query: 114 LNMRNLKKSNSLPRA--------------LNEKQALTLVDNVLLHTSHE----------T 149
           L  RN+     + R               L E++ +  +  +     H+           
Sbjct: 87  LLKRNVMAKIEIKRTNRSKDIASKLEGKLLQEEEIIEFIHYIREGYEHDVADNKQALYAY 146

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI----RIVPLLPS 205
           K    R++ I+ L+   GLR+SE ++LT  ++   + T+ +  KG+        V     
Sbjct: 147 KQNHVRDACIVSLILHSGLRVSEVVNLTLDDLDIKKKTIYVFRKGNNDGSFKTRVYFRQE 206

Query: 206 VRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKP-----LNPGVFQRYIRQLRRYLGLPLS 259
             + +  Y ++          +  LF  I         +     Q  + +  +  G P  
Sbjct: 207 AMEDLSRYLEIRETRYRPPKKEKALFLTIPNGRSEGKMMTKRAMQEMVLKYAKRFGKPY- 265

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            + H LRHSFAT       DL   Q  LGH    TTQIY ++  K   + +
Sbjct: 266 LSVHKLRHSFATDYYLQN-DLYKTQEQLGHASSDTTQIYAHLTDKTMEEAI 315


>gi|307708685|ref|ZP_07645148.1| tyrosine recombinase XerC [Streptococcus mitis NCTC 12261]
 gi|307615259|gb|EFN94469.1| tyrosine recombinase XerC [Streptococcus mitis NCTC 12261]
          Length = 356

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 116/326 (35%), Gaps = 51/326 (15%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  +  +F  ++             I +  +  +S  ++ +FI   R     
Sbjct: 33  YSFTTLYEYLKEYDRFFSWVLESDISNADKMSDIPLSVLENMSKKDMESFILYLRERPLL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKR--------------------KITTESNIL 114
                 Q +   ++ R+LS + S  KYL +                     K   E+   
Sbjct: 93  NANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAA 152

Query: 115 NMRNLKKSNSLPR----ALN--EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
              N+K+   L       L   +++    + N  L + ++ K    R+ AI+ LL   G+
Sbjct: 153 RAENIKQKLFLGDETEGFLTYIDQEYPQQLSNRALSSFNKNK---ERDLAIIALLLASGV 209

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQL 227
           R+SEA++L  +++      + +  KG K   V +    +  +  Y  +            
Sbjct: 210 RLSEAVNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKTDT 269

Query: 228 PLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
            LF  +       ++    ++ + +        +  T H LRH+ AT L         + 
Sbjct: 270 ALFLTLYRGVPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVS 327

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWM 310
             LGH     T +YT++ +    + +
Sbjct: 328 HQLGHASTQVTDLYTHIVNDEQKNAL 353


>gi|194449272|ref|YP_002045468.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194407576|gb|ACF67795.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
          Length = 404

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 96/282 (34%), Gaps = 22/282 (7%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK----RRTQKIGDRSLKRSL 92
            +Y           +++   ++T + I +      R ++ +    +   K+   +     
Sbjct: 112 SNYSIWVSAGKHLRSYHGRAELTFEEIDKKFLEGFRKYLLEEPLTKSKSKLAKNTASSYF 171

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           + +++ L    +  I  ++ +  ++++K  N+    L   +   +           TK  
Sbjct: 172 NKVRAALNEAYREGIIRDNPVQRVKSVKAENTKRTYLTLDEVRAM-----------TKAE 220

Query: 153 DARNSAILYLLYGC--GLRISEALSLTP-QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              +      L+ C  GLR S+   LT  +    +    RI     K++           
Sbjct: 221 CRYDVLKRAFLFSCTTGLRWSDINKLTWSEIEEFEPGHYRIIFDQQKLKNGGNSLVYLDL 280

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
                 L            +F G++            + Q     G+    T H  RH+F
Sbjct: 281 PDSAVTLLNIQNKEGPDDRVFVGLKYN----SYMNVALLQWAMRAGITKHVTFHAGRHTF 336

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           A   L+ G D+ S+  +LGH  L TT+IY ++        M 
Sbjct: 337 AVAQLNRGVDIYSLSRLLGHSELRTTEIYADILESRRVTAMR 378


>gi|317479188|ref|ZP_07938324.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316904632|gb|EFV26450.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 409

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 117/287 (40%), Gaps = 25/287 (8%)

Query: 32  SKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K ++ +Y    R    F+   +    +    + +    E + +I   + + +   + + 
Sbjct: 130 AKSSMSTYIYTRRYLGEFIQKRFKTSDVAFGQLNEHIPWEFQDYI--LKDKGLAVDTARH 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L+ +K   +   K     +   +N +  +++   PRAL+ +    + D V+       +
Sbjct: 188 YLAILKKICRMAFKEGHAEKRYFVNFKLPQENRKPPRALSREDFEKIRDVVI----PPER 243

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRI---QGKGDKIRIVPLLPSV 206
                   +       G+  ++A+S+T  N   DD+  L +   + K + +  V LLP  
Sbjct: 244 ITHNIARDLFLFACYTGVPYADAVSITRDNIYKDDKGDLWLKYLRKKNEYLARVKLLPEA 303

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              I +Y          + +  LF  I    +     +R+++ LR   G+      H  R
Sbjct: 304 ISLIEKY--------RSDDRKELFPMIHHPNM-----RRHMKGLRDLAGISCDLVYHMGR 350

Query: 267 HSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           H+F + + L  G  + +I  +LGH  L+TTQ+Y  V+ K   + M +
Sbjct: 351 HTFGSLITLEAGVPIETISKMLGHTNLTTTQLYARVSPKKLFEDMDK 397


>gi|257055932|ref|YP_003133764.1| site-specific recombinase XerD [Saccharomonospora viridis DSM
           43017]
 gi|256585804|gb|ACU96937.1| site-specific recombinase XerD [Saccharomonospora viridis DSM
           43017]
          Length = 369

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 60/291 (20%), Positives = 108/291 (37%), Gaps = 32/291 (10%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L  L   +  S  T + Y  D  +   +LA  T     +  +  L++  + A+    +++
Sbjct: 68  LHWLSSYQRRSLDTKRGYADDILRIAEWLASSTGRS-PVALLTDLTFDTVTAWSLYAKSR 126

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM--RNLK-------KSNSLPRALNEK 132
               R+ +R LS + S  ++ ++       N +++             +     R L   
Sbjct: 127 GWSARTQRRYLSALSSLFEHARRVHRLDVDNPVHLATHAPPLGTSTNGRPPGATRVLELS 186

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRI 190
           +   L                A +  +  LL+  GLR SE +SL  +N+   Q    L +
Sbjct: 187 EVAALAKAC----------SSAEDHLVFELLFVQGLRESEVVSLDIENLDRSQVPPVLSV 236

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQ 249
           + KG +     L  +  + +  Y       L    + P+    R  +  +        R+
Sbjct: 237 ERKGGRWVRRRLSDAAVRHLDAY-------LGDRDRGPVLVHPRTGQRRDRHQLISITRR 289

Query: 250 LRRYLGLPL--STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           L R+  LP     T H LR +  T+LL     L+ +Q   GH   STT+ Y
Sbjct: 290 LARHARLPQPQKVTPHVLRATAITNLLDKAKPLQEVQEWAGHAHASTTRGY 340


>gi|209516757|ref|ZP_03265609.1| integrase family protein [Burkholderia sp. H160]
 gi|209502874|gb|EEA02878.1| integrase family protein [Burkholderia sp. H160]
          Length = 315

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 62/297 (20%), Positives = 112/297 (37%), Gaps = 27/297 (9%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           Q +   RG  +L    YE + R    F            T+ ++   ++  F+     + 
Sbjct: 9   QYIAYRRGNGEL----YESNGRMLRAFSRSLGPHM----TLARVRSAQVNRFL---NGEG 57

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
               +       ++ F +Y+  R     S +      +    +P   +  +   L+   +
Sbjct: 58  PVTSNWHAKHQALRGFYRYVISRGYVQSSPLPKAIPKRPPPFVPYIYSRDELKALLCACM 117

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVP 201
            +  + ++        +L LLYG GLR+ EA+ LT  ++    S L ++  K  K R+VP
Sbjct: 118 TYQKNRSRIDPQMMQTLLVLLYGTGLRVREAIRLTCADVDISSSCLIVRQTKFRKTRLVP 177

Query: 202 LLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
               +  A+  + D      L    Q   F    G+PL     +    ++R+  G+  + 
Sbjct: 178 FGAEICGALKRHADRRERGALPEQAQTLFFVSRDGRPLCQSTIEDVFGRIRKEAGVRRTD 237

Query: 261 TA------HTLRHSFATH----LLSNGGD----LRSIQSILGHFRLSTTQIYTNVNS 303
            A      H LRH+FA H        G D    L  + + LGH  L+ T +Y  +  
Sbjct: 238 GARYQPRLHDLRHTFAVHRLIAWYREGADVQTWLPVLSTYLGHTYLAATSVYLTMTP 294


>gi|197303476|ref|ZP_03168515.1| hypothetical protein RUMLAC_02198 [Ruminococcus lactaris ATCC
           29176]
 gi|197297474|gb|EDY32035.1| hypothetical protein RUMLAC_02198 [Ruminococcus lactaris ATCC
           29176]
          Length = 426

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 137/336 (40%), Gaps = 44/336 (13%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ- 81
           + L+ + G+ + T Q Y    R          +E    +TIR +  ++ + F+ K + + 
Sbjct: 94  RYLKTKTGVRQSTKQGYVTVQRLLA-------KETFGKKTIRSVKTSDAKLFLIKLQQED 146

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLKKSNSLPR-ALNEKQALTLVD 139
                S+      ++   +      I  ++     +  +  ++++ R A+++ Q    + 
Sbjct: 147 GKSYSSIHTIRGVLRPAFQMAVDDDILVKNPFGFQLAGVLVNDAVTREAISKDQMRKFLK 206

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            V          +  +   ++Y+L+  G+RISE   LT ++I  +  T+ I  +  +   
Sbjct: 207 FV------HDDVVYCKYYEVVYILFHTGMRISEFCGLTLKDIDLENRTVNIDHQLQRTSD 260

Query: 200 VPLLPSVRK-------------------AILEYYDLCPFDLNLN-IQLPLFRGIRGKPLN 239
           +  +    K                   AI+E  +    + +++     LF    G PL 
Sbjct: 261 MRYIIETTKTDAGTRVLPITEDVAQMFQAIIEDRNAPKVEKSIDGYSGFLFYDDNGMPLV 320

Query: 240 PGVFQRYI-RQLRRYLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              +Q      + RY  +      + T H  RH++ +++  +G + +++Q ++GH  +S 
Sbjct: 321 AMHWQHRFNHMVGRYNDIYRVQIPNITPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISV 380

Query: 295 TQ-IYTNVNSKNGGDWM--MEIYDQTHPSITQKDKK 327
           T  +YT++   +  + +  ME + +    + QK +K
Sbjct: 381 TMNVYTHIGFDDAEEELKRMEEFRKAQAEVEQKKEK 416


>gi|1085059|emb|CAA55635.1| unknown [Lactobacillus leichmannii]
          Length = 308

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/293 (17%), Positives = 108/293 (36%), Gaps = 35/293 (11%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKI------GDRSLKRSLSGIKSFLKY-------LK 103
           ++    + +LS +++  ++ K    +          ++ RSL+ ++S  KY         
Sbjct: 12  QVLPSDLEKLSRSDVMLYLDKLEHSRNKQGHLNSPTTVNRSLNALRSLYKYLTITADKNN 71

Query: 104 KRKITTESNILNMRNLKKSNSL---PRALN--------EKQALTLVDNVLL-----HTSH 147
                  + +L + +L  +++L     AL         + Q +  +D             
Sbjct: 72  GEPYFDRNVMLKINSLPYTSTLNYRAHALEAHMYTGNLKYQFMDFLDQKFAGLCSGRALS 131

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
             K    R+ A++ L+ G G+R+SE   +  +++   ++TL I  KG +   VP+     
Sbjct: 132 SFKQNKERDMAVIALILGTGIRVSECAGVDMKDLNLKEATLDITRKGGQRDSVPVADWTL 191

Query: 208 KAILEYYDLCPFDLNLNIQLPLFR----GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
             + +Y  +             F         + +     ++ + +     G P   T H
Sbjct: 192 PYLEKYLAIRADRYKAPATNKAFFLTSYHQECRRMTTNAIEKMVGKYSAAFGHP--LTPH 249

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            LRH+ A+ L     D   +   LG    S T +YT+V+ +     +     Q
Sbjct: 250 KLRHTVASELYQATKDQVMVAQQLGQKGTSATDLYTHVDQREQRAALNASAKQ 302


>gi|323973234|gb|EGB68426.1| phage integrase [Escherichia coli TA007]
          Length = 331

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 60/296 (20%), Positives = 110/296 (37%), Gaps = 37/296 (12%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-----EKITIQTIRQLSYTEIRAFI 75
           W      +R LS+L    +  D R       + T       ++      Q++   +  + 
Sbjct: 51  WQARPADQRRLSELIEVWWMLDGRNQAYGDTYRTRLEKVIREMGDPRASQMTRKFMIEYR 110

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQA 134
           S +    +   S+ R L  + +    L        E+ +  +R LK  N+    L++ + 
Sbjct: 111 SDKLQAGLMPSSINRDLCALSAMFSLLIDAEVYHNENPVRGIRKLKVQNTEMAFLSDDEI 170

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+           K ++     I  L    G R  EA +L  ++I+ ++ T     K 
Sbjct: 171 DRLL-----------KRLEGDARRIAILCLSTGARWKEASTLRGEHIVGNRVTF-FNTKN 218

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K R VP+  SV   I        + ++               L+     + ++      
Sbjct: 219 GKSRSVPVADSVVPLIKTRRTGLLYQVDY--------------LSFREILQEVKP----- 259

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            LP     H +RH+FATH + NGG++ ++Q ILGH  +  T  Y + +     D +
Sbjct: 260 DLPKGQATHVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYAHFSPDFLQDAI 315


>gi|212695524|ref|ZP_03303652.1| hypothetical protein ANHYDRO_00041 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677402|gb|EEB37009.1| hypothetical protein ANHYDRO_00041 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 411

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 121/336 (36%), Gaps = 62/336 (18%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIG 84
           +++RGL   T ++Y    +QF+       E       +  +  +++R+F ++ +  Q + 
Sbjct: 80  KVKRGLKDNTFKNYIYMYQQFV-------EPTFGRIKLSDIKRSDVRSFYNRLKEDQGLM 132

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNS----LPRALNEKQALTLVD 139
             ++    + +   L+     +    +   N ++ LK +        +A+  ++   L +
Sbjct: 133 ISTIDCVHTVLHQVLELAVDDEYIRFNPSDNALKELKVAYRNESPKKKAMTIEE-QVLFE 191

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------- 191
             L ++    KW       I  ++   G+R+ E   L   ++  D   + +         
Sbjct: 192 EYLSNSDEYKKW-----YPIFIVMLWTGMRVGEVTGLQWDDLDFDNGLINVNRTLVYYSK 246

Query: 192 GKGDKIRIVPLLPSVR-------------------KAILEYYDLCPFDLNLNIQLPLFRG 232
           GKG   R     P                      + + + + +   D     +  +F  
Sbjct: 247 GKGLNNRYAINTPKTASGKRSIPMVQKVKDAFLMERELQKTFGIECCDSIDGFKDFVFLN 306

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLP---------------LSTTAHTLRHSFATHLLSNG 277
             GK  N G   + +R++ R   L                   + H  RH+F T L    
Sbjct: 307 RFGKVHNNGTLNKALRRIVRDCNLSIMDKNKSSSNDILLVPHLSNHIFRHTFTTRLNEQN 366

Query: 278 GDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMME 312
            + +++QSILGH  +STT  IY +       + M E
Sbjct: 367 INTKAMQSILGHSDISTTMDIYVDATEDFKIEQMGE 402


>gi|170684056|ref|YP_001744555.1| type 1 fimbriae regulatory protein [Escherichia coli SMS-3-5]
 gi|218700830|ref|YP_002408459.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli IAI39]
 gi|170521774|gb|ACB19952.1| type 1 fimbriae regulatory protein, FimB family [Escherichia coli
           SMS-3-5]
 gi|218370816|emb|CAR18629.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli IAI39]
          Length = 209

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 50/176 (28%), Positives = 72/176 (40%), Gaps = 9/176 (5%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L   +   L+ +V        K   +R+  ++ L Y  GLR+SE LSL   ++     
Sbjct: 5   KFLTHHEINLLLQSV------RQKSCSSRDVCMILLAYFHGLRVSELLSLQLSDLELTTE 58

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVF 243
            + IQ  K     + PL      AI  + +        + N    LF    GKPL+   F
Sbjct: 59  KIYIQRIKNGFSTVHPLQKEEVIAITNWLNERNSLNVKHFNDNPWLFVSRTGKPLSRQRF 118

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
              +    +  GL +    H LRH+    L  NG D R IQ  LGH  +  T IYT
Sbjct: 119 YNIVSAAGKNAGLNIKVHPHMLRHACGYSLADNGVDTRLIQDYLGHRNIRHTVIYT 174


>gi|270292742|ref|ZP_06198953.1| integrase/recombinase, phage integrase family [Streptococcus sp.
           M143]
 gi|270278721|gb|EFA24567.1| integrase/recombinase, phage integrase family [Streptococcus sp.
           M143]
          Length = 356

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 53/323 (16%), Positives = 109/323 (33%), Gaps = 45/323 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYT------EEKITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  +  +F  ++             I +  +  +S  ++ +FI   R     
Sbjct: 33  YSFTTLYEYLKEYDRFFSWVLESGISNADKMSDIPLSVLENMSKKDMESFILYLRERPLL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                 Q +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 93  NANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAS 152

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA--------RNSAILYLLYGCGLRIS 171
           +  N   +     +    +  +      +              R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETEGFLTYIDQEYPQQLSNRALSSFNKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLF 230
           EA++L  +++      + +  KG K   V +    +  +  Y  +           + LF
Sbjct: 213 EAVNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKTDIALF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
             +       ++    ++ + +        +  T H LRH+ AT L         +   L
Sbjct: 273 LTLYRGVPNRIDTSSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH     T +YT++ +    + +
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNAL 353


>gi|303255767|ref|ZP_07341809.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           BS455]
 gi|302597279|gb|EFL64383.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           BS455]
          Length = 356

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 116/326 (35%), Gaps = 51/326 (15%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  +  +F  ++             I +  +  +S  ++ +FI   R     
Sbjct: 33  YSFTTLYEYLKEYDRFFSWVLGSGISNADKISDIPLSVLENMSKKDMESFILYLRERPLL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKR--------------------KITTESNIL 114
                 Q +   ++ R+LS + S  KYL +                     K   E+   
Sbjct: 93  NANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAA 152

Query: 115 NMRNLKKSNSLPR----ALN--EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
              N+K+   L       L   +++    + N  L + ++ K    R+ AI+ LL   G+
Sbjct: 153 RAENIKQKLFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNK---ERDLAIIALLLASGV 209

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQL 227
           R+SEA++L  +++      + +  KG K   V +    +  +  Y  +            
Sbjct: 210 RLSEAVNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKTDT 269

Query: 228 PLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
            LF  +       ++    ++ + +        +  T H LRH+ AT L         + 
Sbjct: 270 ALFLTLYRGVPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVS 327

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWM 310
             LGH     T +YT++ +    + +
Sbjct: 328 HQLGHASTQVTDLYTHIVNDEQKNAL 353


>gi|260912329|ref|ZP_05918879.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260633556|gb|EEX51696.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 410

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 65/286 (22%), Positives = 108/286 (37%), Gaps = 24/286 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           SK +LQ Y    R F  FL + Y ++ I +         +   ++S          +  +
Sbjct: 129 SKDSLQKYSVLRRHFAEFLIYKYGKKDIGLAEFTPSVVQDFELYLST--AAGCAYNTSVK 186

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L  +K+   Y +KR        LN R   +  +    L +++ + + +        E  
Sbjct: 187 KLKALKTVTIYAQKRGYLLHDPFLNHRFHLEPVNR-GFLTDEEIMKIANKDFAIQRLEL- 244

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVR 207
               R+  I       GL   +  +LTP NI    D Q  +  + K      V LL   +
Sbjct: 245 ---VRDVFIFSCF--TGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPK 299

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             I +Y      D           G     L       Y++++    G+  + T H  RH
Sbjct: 300 SIIAKYSHKTYRD-----------GKLFPILTNQKTNAYLKEIADLCGVKKNLTFHLARH 348

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +FAT  LS G  + S+  +LGH  + TTQIY  + +K     M ++
Sbjct: 349 TFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQL 394


>gi|228911955|ref|ZP_04075682.1| Integrase-recombinase [Bacillus thuringiensis IBL 200]
 gi|228847676|gb|EEM92603.1| Integrase-recombinase [Bacillus thuringiensis IBL 200]
          Length = 390

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 65/307 (21%), Positives = 114/307 (37%), Gaps = 34/307 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEE--------KITIQTIRQLSYTEIRAFISKRRT 80
           +   + T +SY  +   F   +  + EE        +     ++ L    IR + S  + 
Sbjct: 81  KNRKEGTKKSYVSEILSFCQCMVQHAEEFELNGEEVQKKDSLLKILQPWHIRKYNSWLKQ 140

Query: 81  -------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--NLKKSNSLPRALNE 131
                        +L +    I+SFLK+L       +     ++  N+ + +   R L+ 
Sbjct: 141 VENGRNGDTYAVATLAKKTVLIRSFLKHLHVFSYIEKPLYEELQRANVNEQDRPNRDLSY 200

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRI 190
            + + ++           +     N  IL  L   G RI E  +   ++   D +  L++
Sbjct: 201 DEVMKILGFY-------KERGHLVNYTILLALASTGARIQELCTARVKDLHYDGKYWLKV 253

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            GKGDK+R + +   + + I E          L    + PLF   RG   N       + 
Sbjct: 254 TGKGDKVRELFISEHLYQCICEMRRRRGCQTVLEKRDESPLFINQRGNAYNSKTLSNQVT 313

Query: 249 QLRRYLGLPL------STTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTNV 301
            + +   L          TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   
Sbjct: 314 DMIKKTNLEFLLYRENPVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEK 373

Query: 302 NSKNGGD 308
           + K   +
Sbjct: 374 HMKRKNN 380


>gi|254168847|ref|ZP_04875688.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|254169391|ref|ZP_04876219.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|197621670|gb|EDY34257.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|197622284|gb|EDY34858.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
          Length = 299

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 118/287 (41%), Gaps = 32/287 (11%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +E Q WL    + +G S++T++         L ++ F     + +  +  +   ++  F 
Sbjct: 4   REFQLWL----LGQGYSQITIK-------HSLSYIRFLEGMGLDVDHVENV--EDVLLFF 50

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           ++ R++     +L   +  +  +  +   R    +      R  K +  +P    + +  
Sbjct: 51  AELRSKGTKTTTLNYYVKALNRYFAF---RGADIKLKYYRHRT-KDTIWIP---TDDEVK 103

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KG 194
            ++              D RN A+L++ +  G+R+ E ++L   ++ +    L I+  K 
Sbjct: 104 RIL-----SVRWRRYDQDLRNRAMLHIAFSTGVRLGELIALNWADLDETNHLLEIRTEKS 158

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
              R+VP+ P V + +++Y  +      L+    +F    G  ++    ++  ++     
Sbjct: 159 GGTRLVPIPPKVLELLIQYRKVRI----LSDPNAMF-TTYGGRISNAYARKIFKEAGERA 213

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           G+     +H  RH  A   L  G  L +I+ +LGH  L +TQIY   
Sbjct: 214 GV-KKFHSHAARHWRAVKWLEEGLSLETIRRLLGHSSLKSTQIYLRA 259


>gi|262042628|ref|ZP_06015784.1| phage integrase family site-specific recombinase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259040062|gb|EEW41177.1| phage integrase family site-specific recombinase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 276

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 93/236 (39%), Gaps = 31/236 (13%)

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R + +  R++   L+  ++    LK+    T  + + N+R  K +      L  ++A  L
Sbjct: 38  RVKAVPPRTVNLELAYFRAMFNELKRLDDWTAPNPLENVREFKIAEIELAWLTVEEAARL 97

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++      + +          I+ +    G R  EA SLT + I   + T  I+ KG K 
Sbjct: 98  LEECEKSKAEDLT-------MIVKICLATGARWGEAESLTGKQISPGKITF-IKTKGKKN 149

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL- 256
           R VP+   + + +                 PLF G               R   +  G+ 
Sbjct: 150 RAVPISEELYELL----------PKSRTSKPLFTGCYS----------AFRSAIKRAGIE 189

Query: 257 -PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            P    +H LRH+FA+H +  GG++  +Q ILGH  +  T  Y +    +  + + 
Sbjct: 190 LPDGQLSHVLRHTFASHFMMGGGNILVLQRILGHTDIKVTMRYAHFAPDHLTEAVQ 245


>gi|148994508|ref|ZP_01823688.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP9-BS68]
 gi|168488988|ref|ZP_02713187.1| tyrosine recombinase XerC [Streptococcus pneumoniae SP195]
 gi|147927178|gb|EDK78214.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP9-BS68]
 gi|183572441|gb|EDT92969.1| tyrosine recombinase XerC [Streptococcus pneumoniae SP195]
 gi|332073503|gb|EGI83982.1| phage integrase family protein [Streptococcus pneumoniae GA17570]
          Length = 356

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 116/326 (35%), Gaps = 51/326 (15%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEE------KITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  +  +F  ++             I +  +  +S  ++ +FI   R     
Sbjct: 33  YSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSALENMSKKDMESFILYLRERPLL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKR--------------------KITTESNIL 114
                 Q +   ++ R+LS + S  KYL +                     K   E+   
Sbjct: 93  NANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAA 152

Query: 115 NMRNLKKSNSLPR----ALN--EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
              N+K+   L       L   +++    + N  L + ++ K    R+ AI+ LL   G+
Sbjct: 153 RAENIKQKLFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNK---ERDLAIIALLLASGV 209

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQL 227
           R+SEA++L  +++      + +  KG K   V +    +  +  Y  +            
Sbjct: 210 RLSEAVNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKTDT 269

Query: 228 PLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
            LF  +       ++    ++ + +        +  T H LRH+ AT L         + 
Sbjct: 270 ALFLTLYRGVPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVS 327

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWM 310
             LGH     T +YT++ +    + +
Sbjct: 328 HQLGHASTQVTDLYTHIVNDEQKNAL 353


>gi|291515632|emb|CBK64842.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 417

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 67/308 (21%), Positives = 123/308 (39%), Gaps = 31/308 (10%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEI 71
           + +ER N ++ L + +  S  TLQ      R+    +  Y      +Q I  R + Y  +
Sbjct: 127 IFRERLNKMEQL-VGKEYSPATLQK----FREVFAHVERYIRTSYNMQDIPIRSVDYRFV 181

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           + F      Q +   ++ + +  ++  + +  K     +   +  R LK+   L   L +
Sbjct: 182 KQFEEALIVQGLKAITINKIMQRVRQMVTFAFKCNYIQQDPFVEYRPLKERKRL-VFLTQ 240

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTL 188
           ++   L  +       ET         I       GL   EA +L P++I    D ++ +
Sbjct: 241 EELHKLEHHHFAQKRLETVKN------IYLFSVYTGLAYHEAQALQPKHITKGFDGRNWI 294

Query: 189 R-IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
             ++ K D+   VPLLP   K I  + +    D  +              ++      Y+
Sbjct: 295 TLVRQKTDREVSVPLLPQAEKLIAWFREFGSTDDYIQP-----------RISNQKVNSYL 343

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQI-YTNVNSKN 305
           R++   +G+    T HT R +FAT  LL N   +  +  +LGH  +S TQ  Y  V +KN
Sbjct: 344 REIADVVGIDKKLTHHTARKTFATTILLYNDVPIEVVSKLLGHSNISVTQHSYAQVLNKN 403

Query: 306 GGDWMMEI 313
             + +  +
Sbjct: 404 ISNHIGRL 411


>gi|119952768|ref|YP_950403.1| phage integrase family protein [Arthrobacter aurescens TC1]
 gi|119951898|gb|ABM10807.1| phage integrase family domain protein [Arthrobacter aurescens TC1]
          Length = 386

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 58/333 (17%), Positives = 124/333 (37%), Gaps = 54/333 (16%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K+  ++L  L      S  TL+SY  D  ++  FLA               +  ++R  +
Sbjct: 49  KDIDDFLLTLAT-NDCSPQTLRSYAFDLLRWWRFLAAVGIR------WSTATREDVRDLV 101

Query: 76  SKRR------TQKIGDRSLKRSLSGIKSFLKYLK-----------------KRKITTESN 112
              R       +     S+   LS +  F ++                    R+    + 
Sbjct: 102 LWMRQPRQEGRRAYSPTSINHMLSVLFVFYEHHARLGQGPVANPIPSAAMGMRRYQHHNP 161

Query: 113 ILNMRNLKKS-------NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
           +   +  K++          PRAL+      +           T     R+ A++ +   
Sbjct: 162 LAPYQPQKRAAYRQRVVTGTPRALSHDLVGRVF----------TALTSTRDKALVAMYLA 211

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
            G R SE L +  +++     ++ +  KG   R    +P+   ++             + 
Sbjct: 212 TGARASELLGMKARDVDWGNQSIAVVSKG--TRAYQWVPTSPDSLTWLRLYLSEMPLTSP 269

Query: 226 QLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRS 282
           +  L+R +R   +PL     +  + ++ + LG   + T H  RH+ A+ L ++    L  
Sbjct: 270 EDALWRTLRRPYRPLQYSALRAMLVRVNKALG--TAITLHDFRHTCASRLANDPSIPLTD 327

Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +Q++L H  L+TT  Y + N+++    +++ ++
Sbjct: 328 VQAVLRHKHLTTTSKYIHTNTQDMVQRVLQHHE 360


>gi|314952603|ref|ZP_07855596.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|313595291|gb|EFR74136.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
          Length = 330

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 101/303 (33%), Gaps = 48/303 (15%)

Query: 36  LQSYECDTR-----QFLIFLAFYTEEKITIQTIRQLSYT----EIRAFISKRRTQKIGDR 86
           + +Y    +         F   +         + ++S +    ++  +    +      +
Sbjct: 27  IDNYRTRVKPSSVAVAQRFCKNHILPAFGELRLDKISVSYCQKQVNEWHKTLKQYGFLRK 86

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV--DNVLLH 144
           +            K+    ++  ++ +           LPR + E+Q L     D + L 
Sbjct: 87  TTA-------QIFKFGVAMEVCKDNPMSK-------TLLPRKIEEEQPLKFYTKDQLQLF 132

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM----------------DDQSTL 188
             +  +    +      LL   G+R SEAL+L  ++I                  +Q  L
Sbjct: 133 LQNTKENNSVKLYTFFRLLAYTGMRKSEALALQWEDIDYFNKTITIGKTIAQDEFNQVVL 192

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL------NLNIQLPLFRGIRGKPLNPGV 242
           ++    +  R + L     K +  +       +        + +  LF     K   P V
Sbjct: 193 QVPKTKNSSRTIQLDDFTLKQLRIWQQEQMKIMILYGYNTNSPKQFLFTTNTNKLYYPQV 252

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNV 301
              ++  + +   +    T H  RH+  + L  +G  ++ +Q  LGH  + TT  IY +V
Sbjct: 253 VNDWLDWIYKKTPMEPQITPHGFRHTHCSLLFESGASIKEVQERLGHKDIKTTMNIYAHV 312

Query: 302 NSK 304
             +
Sbjct: 313 TPQ 315


>gi|313157316|gb|EFR56741.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 409

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 60/309 (19%), Positives = 115/309 (37%), Gaps = 23/309 (7%)

Query: 14  LLKERQNWLQNLE--IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           LL+    +L      + +  +  T + Y    R+   FL +  E  +     ++L+   I
Sbjct: 109 LLQTFDEYLAEFRKRVGKDRAYSTYEDYCLRRRRLAAFLEY--EYHVKDIPFKELNRNFI 166

Query: 72  RAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRAL 129
             F+    T + +   ++   +  ++       K                K +    R L
Sbjct: 167 EKFVVYLSTVKGLASGTISAGVKKLRLMTYTAYKNGWILVDPFAGFHVRPKYAER--RYL 224

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTL 188
           +  +   ++D  L +      +    N  +       GL  ++ + LT  +I  D     
Sbjct: 225 SASELQAVMDVELPN------YRTGINRDVFVFCAFTGLSHADVVKLTHADIHTDYNRNH 278

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            I  K  K      +  +  A + Y       L  N   P+ R  +   ++       +R
Sbjct: 279 WIIDKRQKTGTQFRVKLLPIAEIIYDRYKNLHLEGNKVFPIKRYYKTMNMS-------LR 331

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            + R  GL  + T H  RH+FAT + L+ G  L ++  +LGH R++TTQIY  + +   G
Sbjct: 332 HVARLAGLSFNPTMHMARHTFATTVTLAQGVPLETVSKMLGHKRITTTQIYAQITNDKIG 391

Query: 308 DWMMEIYDQ 316
             M  + ++
Sbjct: 392 RDMAALSEK 400


>gi|237726547|ref|ZP_04557028.1| tyrosine type site-specific recombinase [Bacteroides sp. D4]
 gi|270295238|ref|ZP_06201439.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
 gi|282877673|ref|ZP_06286488.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|294776622|ref|ZP_06742091.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|229435073|gb|EEO45150.1| tyrosine type site-specific recombinase [Bacteroides dorei
           5_1_36/D4]
 gi|270274485|gb|EFA20346.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
 gi|281300245|gb|EFA92599.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|294449537|gb|EFG18068.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 411

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 58/291 (19%), Positives = 109/291 (37%), Gaps = 27/291 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K TL+ Y    +    FL   Y  + I ++ +     ++   F+  R  +     ++  
Sbjct: 130 AKGTLEKYRIVYKHLQEFLDIRYHVKDIALKELTPAFISDFEMFL--RTDKHCCTNTVWL 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +  +++ +      +  T         +KK  +    L +++   L+D  L +   E  
Sbjct: 188 YVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKEEIRLLMDGKLKNAKQE-- 244

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRI-QGKGDKIRIVPLLPSV 206
                   +       GL  S+  +LT +N     D+   + I + K   +  + LL   
Sbjct: 245 ----LYRDLYLFCAFTGLSFSDMRNLTEENIRTYFDEHEWININRQKTGVVSNIRLLDIA 300

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            + I +Y  LC           +F          G     IR + +  G+    T H  R
Sbjct: 301 NRIIGKYRGLC-------ENGKIFPVPHYNTCLAG-----IRAVAKRCGITKHITWHQSR 348

Query: 267 HSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           H+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +     M  +  +
Sbjct: 349 HTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMKNLAAR 399


>gi|157370649|ref|YP_001478638.1| integrase family protein [Serratia proteamaculans 568]
 gi|157322413|gb|ABV41510.1| integrase family protein [Serratia proteamaculans 568]
          Length = 197

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 78/189 (41%), Gaps = 10/189 (5%)

Query: 124 SLP---RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
            LP   + L   +   L+       + E       ++ ++++ +  G R+SE   L   +
Sbjct: 3   KLPQHRKHLTRGEVGRLLLQAAAGRAPER------DTCLIWMGFIHGCRVSELTGLRLAD 56

Query: 181 IMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           +  D   L I + K       PL  + ++ +  + +      NL+ Q  LF   +G  L+
Sbjct: 57  LDMDDGCLYISRLKNGLSTTHPLETTEKRLLQRWLEKRQSCRNLDDQDWLFLSQKGYRLS 116

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                R +R+  R  GL +    H LRH+    L  NG D R IQ  LGH  +  T +YT
Sbjct: 117 RQRIFRMLREYGRRAGLDVEAHPHMLRHACGYALADNGADTRVIQDYLGHRNIQHTVLYT 176

Query: 300 NVNSKNGGD 308
             N+    D
Sbjct: 177 AANAGRFRD 185


>gi|146295078|ref|YP_001185502.1| phage integrase family protein [Shewanella putrefaciens CN-32]
 gi|145566768|gb|ABP77703.1| phage integrase family protein [Shewanella putrefaciens CN-32]
          Length = 389

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 48/282 (17%), Positives = 99/282 (35%), Gaps = 22/282 (7%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR----TQKIGDRSLKRSL 92
            +Y       +    ++   ++T + I +      R ++           +   +     
Sbjct: 112 SNYSIWVSAGIHLHRYHRHAELTFEQIDKYFLEGFRHYLQHEAITKSDTGLSRNTACSYF 171

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           + I++ L   ++ +I  ++ +  ++++K   +    L   +   L           TK  
Sbjct: 172 NKIRAALNQAQRDRIIRDNPVEQVKSIKAERTQRTYLTLDEVKAL-----------TKAE 220

Query: 153 DARNSAILYLLYGC--GLRISEALSLTP-QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              +      L+ C  GLR S+   L   +  +  Q   RI     K++           
Sbjct: 221 CRYDVLRRAFLFSCTTGLRWSDIHKLVWGEIELFSQGHYRIIFSQIKLKNSGNGLQYLDL 280

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
                 L   +        +F+G+R    +       + Q     G+    T H  RH+F
Sbjct: 281 PDSAVRLLNLENKGKPTERVFKGLRYDSYS----NVALVQWAIRAGITKHVTFHAGRHTF 336

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           A + L+ G D+ S+  +LGH  L TT+IY ++      + M 
Sbjct: 337 AVNQLARGLDIYSLSRLLGHSELRTTEIYADILETRRTEAMR 378


>gi|94313439|ref|YP_586648.1| Tyrosine-based site-specific recombinase [Cupriavidus metallidurans
           CH34]
 gi|93357291|gb|ABF11379.1| Tyrosine-based site-specific recombinase [Cupriavidus metallidurans
           CH34]
          Length = 559

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 66/334 (19%), Positives = 119/334 (35%), Gaps = 55/334 (16%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR------------ 79
           S  TL++Y  +  + +++     E    + ++     T  R F+ +              
Sbjct: 231 SPSTLRAYRKEAERLILWA--IIERGRPLSSLTTEDATAYRNFLRQPAPRERWVGPARPR 288

Query: 80  --------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
                      +  RS   SL  + +  ++L +++    +    ++    + +   AL+ 
Sbjct: 289 GATDWKPFADGLSPRSAAYSLQVLGALFRWLVQQRYVLANPFAGIKVRGGAKT--AALDV 346

Query: 132 KQALTLVDNVLLHT-SHETKWIDARN-------SAILYLLYGCGLRISEALSLTPQNIMD 183
             A +  + +L  + +   +W              IL   Y  GLR SE +  T +N+  
Sbjct: 347 SHAFSEGEWLLTRSIADGLEWSYGWEASAAQRLRFILDFTYATGLRASELVGATLRNVET 406

Query: 184 D---QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR--------- 231
           D      LR+ GKG K   V L    R A+  Y       +   +  P            
Sbjct: 407 DVHGDHWLRLVGKGAKAGRVALPTMARNALDRYLVERGLPVTRALWDPTTPIVGNLGSDE 466

Query: 232 --GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT--------AHTLRHSFATHLLSNGGDLR 281
             GI G  L   V +R+       L      T         H LRH+ ATH L+ G +L 
Sbjct: 467 AGGITGARL-WMVIKRFFGTAADQLEAERPATAEKLRRASPHWLRHTHATHALARGAELT 525

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +++  L H  +STT +Y + +       M + + 
Sbjct: 526 TVRDNLRHASVSTTSLYLHGDDVKRARQMDDAFQ 559


>gi|323973807|gb|EGB68981.1| phage integrase [Escherichia coli TA007]
          Length = 336

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 66/321 (20%), Positives = 124/321 (38%), Gaps = 56/321 (17%)

Query: 8   EIVSFELLKER----QNWLQNLEIERGLSKLTL-------------QSYECDTRQFLIFL 50
           E ++FE   +     + WL     +R LS+L               QSY     +F    
Sbjct: 34  EAMAFEKHTQYNHHSKEWLSKPTDKRQLSELKELWWKLKGKHEEHGQSYLRKIERFETMT 93

Query: 51  AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT- 109
                         Q++ + I  + ++RR + I   ++ R L  +      L + ++   
Sbjct: 94  GNPCAF--------QITKSLITQYCAQRRGEGIKPTTINRDLITLGGMFTTLIESELYNG 145

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
           E      + LK+  +    L  ++   L+             +   N  I  L    G R
Sbjct: 146 EHPFRGFKKLKEQTAETGYLTLEEIDALL-----------AALSGDNRKIAVLCLSTGAR 194

Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
             EA  L  +N++ ++ +  ++ K +  R VP+   V   ++              +  L
Sbjct: 195 WGEAARLKAENVIHNRVSF-VKTKTNTPRTVPISDDVAAYVV-----------GKTRGFL 242

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F        +   F+R ++++     LP     H LRHSFATH + NGG++ ++Q ILGH
Sbjct: 243 FPEA-----SYADFRRTLKEV--KPDLPAGQATHALRHSFATHFMINGGNIITLQRILGH 295

Query: 290 FRLSTTQIYTNVNSKNGGDWM 310
            +++ T +Y +   +   D +
Sbjct: 296 TKIAQTMVYAHFAPQYLQDAI 316


>gi|322417793|ref|YP_004197016.1| integrase family protein [Geobacter sp. M18]
 gi|320124180|gb|ADW11740.1| integrase family protein [Geobacter sp. M18]
          Length = 402

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 98/250 (39%), Gaps = 15/250 (6%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
              Q +  ++  ++ A +  +   +    +    LS +K  L    K ++  ++   +  
Sbjct: 146 FGKQRLSGITSRDV-ALLCSKEKARTSATTANHLLSTLKRMLNLAVKWELLEKNPASSQE 204

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             K+     R L++ +    +       S   +  D  + A + +L   G R  E LSL 
Sbjct: 205 KFKEPPQRERYLSKDELPRFL-------SALDEEDDGLSVAAIRMLLFTGCRRGEVLSLK 257

Query: 178 PQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--- 233
              +  D+  + +   K  + R+V L    +  + E ++    ++       +F      
Sbjct: 258 WNEVRLDEDCILLLDTKNGRSRMVHLNARAKAVVEELHENRDKEVRTAASEYVFPSRQGT 317

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           +   L     ++   +  +  G+  +   H LRH+FA+  +  G  L  +Q +LGH  ++
Sbjct: 318 KKGHLFD--LRKPFEKACQRAGVE-NFRIHDLRHTFASMAVRGGASLFDVQKLLGHQDIA 374

Query: 294 TTQIYTNVNS 303
            TQ Y +++ 
Sbjct: 375 MTQRYAHLSD 384


>gi|237722726|ref|ZP_04553207.1| site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|293373709|ref|ZP_06620056.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|301311822|ref|ZP_07217744.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3]
 gi|317473969|ref|ZP_07933248.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|229448536|gb|EEO54327.1| site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|292631364|gb|EFF49995.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|300829924|gb|EFK60572.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3]
 gi|316909811|gb|EFV31486.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 381

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 100/257 (38%), Gaps = 27/257 (10%)

Query: 64  RQLSYTEIRAFISK-------RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           R++       FI         R  + +  +S    +    + L    + ++  E+ I+ +
Sbjct: 134 REIDKDWCLGFIDWIQHTYKTRWDKPLSPKSAADYVGYFSTALNAAVRAEVIPENPIMTL 193

Query: 117 ---RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
                +K   S    L   +   L+D        +         A L+  Y CGLR+S+ 
Sbjct: 194 AATERIKVPESKREYLTIDEIKVLIDTECPREDVK--------RAYLFACY-CGLRLSDV 244

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
            +L  ++I+ D    R+     K      LP  R A+    +    +  L+    +F G+
Sbjct: 245 YALRWKDIVQDGEQYRMSTVMQKTTTPIYLPLSRHAVRWLPERNGAEDGLH----VFAGL 300

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
             +P       + + +     G+    T HT RH+FAT +L+ G DL +   +LGH  + 
Sbjct: 301 PAEP----NINKVLAKWMATAGINKKITYHTSRHTFATMMLTLGADLYTTSKLLGHANVK 356

Query: 294 TTQIYTNVNSKNGGDWM 310
           TTQIY  +      + +
Sbjct: 357 TTQIYAKIVDSKKVEAV 373


>gi|322435641|ref|YP_004217853.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321163368|gb|ADW69073.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 352

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 106/276 (38%), Gaps = 21/276 (7%)

Query: 42  DTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK---IGDRSLKRSLSGIKSF 98
           D +  +  +   T E   +     L+   I ++++  RT+    +   +  R  + I   
Sbjct: 90  DIKTVMGRMKMLTGE-FGLVAASDLTPQMIDSWLTDYRTKGKNVLAPATKNRYRALISLV 148

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
            +   +      +    +    ++N+  R L   +   L   +    +    +I A + A
Sbjct: 149 YRQGMRNGKVKANPARLVAARAENNARVRYLLPDEEKALRTAME---NGRLCYIPALDVA 205

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC 217
           +       G+R+SE  SLT + I   +  + + + K    R +P+  +   A        
Sbjct: 206 L-----NSGMRLSEQFSLTWEAIDFGRKEIVLDETKNGSSRHIPMNSTCEAAFRSLVVAG 260

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
               +      +F    GK +N    +++        G+    T H+LRH+F + L   G
Sbjct: 261 QKPADR-----VFSSRHGKAIN--TPRKWFEASAEEAGIT-DLTWHSLRHTFCSRLAMAG 312

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            D+R+I  + GH  L+    Y++++  +    + ++
Sbjct: 313 VDIRTIAQLAGHKTLAMAMRYSHLSPSHNLSAIEKL 348


>gi|314939350|ref|ZP_07846593.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
 gi|314941881|ref|ZP_07848746.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|314994173|ref|ZP_07859479.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|314997838|ref|ZP_07862745.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313588142|gb|EFR66987.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313591408|gb|EFR70253.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|313599328|gb|EFR78173.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|313641359|gb|EFS05939.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
          Length = 329

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 101/303 (33%), Gaps = 48/303 (15%)

Query: 36  LQSYECDTR-----QFLIFLAFYTEEKITIQTIRQLSYT----EIRAFISKRRTQKIGDR 86
           + +Y    +         F   +         + ++S +    ++  +    +      +
Sbjct: 26  IDNYRTRVKPSSVAVAQRFCKNHILPAFGELRLDKISVSYCQKQVNEWHKTLKQYGFLRK 85

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV--DNVLLH 144
           +            K+    ++  ++ +           LPR + E+Q L     D + L 
Sbjct: 86  TTA-------QIFKFGVAMEVCKDNPMSK-------TLLPRKIEEEQPLKFYTKDQLQLF 131

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM----------------DDQSTL 188
             +  +    +      LL   G+R SEAL+L  ++I                  +Q  L
Sbjct: 132 LQNTKENNSVKLYTFFRLLAYTGMRKSEALALQWEDIDYFNKTITIGKTIAQDEFNQVVL 191

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL------NLNIQLPLFRGIRGKPLNPGV 242
           ++    +  R + L     K +  +       +        + +  LF     K   P V
Sbjct: 192 QVPKTKNSSRTIQLDDFTLKQLRIWQQEQMKIMILYGYNTNSPKQFLFTTNTNKLYYPQV 251

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNV 301
              ++  + +   +    T H  RH+  + L  +G  ++ +Q  LGH  + TT  IY +V
Sbjct: 252 VNDWLDWIYKKTPMEPQITPHGFRHTHCSLLFESGASIKEVQERLGHKDIKTTMNIYAHV 311

Query: 302 NSK 304
             +
Sbjct: 312 TPQ 314


>gi|312875712|ref|ZP_07735708.1| site-specific tyrosine recombinase XerS [Lactobacillus iners LEAF
           2053A-b]
 gi|311088763|gb|EFQ47211.1| site-specific tyrosine recombinase XerS [Lactobacillus iners LEAF
           2053A-b]
          Length = 363

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 65/360 (18%), Positives = 138/360 (38%), Gaps = 51/360 (14%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA--------- 51
           M+  N  +++  +L +    ++     +  L+  T+  Y  +  +F  +L          
Sbjct: 1   MQKENYQKLIEQKL-QSLPLYVYYYAQQPNLAVTTIYQYLSEYERFFTWLRTTQTTSTND 59

Query: 52  -------FYTEEKITIQTIRQLSYTEIRAFI-----SKRRTQKIGDR-SLKRSLSGIKSF 98
                    + + I+I T++ L  ++++ ++     ++ +  KI  + ++ R++  ++S 
Sbjct: 60  DNKLICTATSNKDISIDTLKNLQASQVQQYLIDCQSTENKQNKITSKITINRTIHALRSL 119

Query: 99  LKY------------LKKRKITTESNI-------LNMRNLKKSNSLPRALNEKQALTLVD 139
             Y               R +  +          ++ RN+K    L     + + +  ++
Sbjct: 120 FHYLTVVADLNNGEPYFYRNVMLKIPFYKGVKESISYRNVKYGPQLYMGEKKFEWIHFIE 179

Query: 140 NVLL-----HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           N        H     K+   R+ AI+ LL   GLRISE ++L   ++     ++ +  KG
Sbjct: 180 NDYEKTLSKHAIRYFKFNKERDIAIIALLLASGLRISELVNLNIHDLNIIDRSVLVIRKG 239

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRG---KPLNPGVFQRYIRQL 250
            K     +       + +Y  +       N QL  +F        K ++    QR++ + 
Sbjct: 240 GKKDAALIADWAIPYLKKYLHVRNTRYQPNKQLKAIFITRYRETAKRIDTSTIQRFVEKY 299

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                    TT H LRHS  T + +   D+ ++ + LGH  LS T  Y    +K     +
Sbjct: 300 SVAFPDGSRTTPHKLRHSLGTEIYNKSMDVVAVATQLGHTGLSATDQYIQQANKEKQRMI 359


>gi|317055794|ref|YP_004104261.1| integrase family protein [Ruminococcus albus 7]
 gi|315448063|gb|ADU21627.1| integrase family protein [Ruminococcus albus 7]
          Length = 415

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 62/325 (19%), Positives = 123/325 (37%), Gaps = 52/325 (16%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           +GL   T  +Y+    QF+       E K     +  L  T++RAF +    ++ I   S
Sbjct: 84  KGLKDNTFSNYKYSYEQFV-------EPKFGRIKLTDLKRTDVRAFYNYLADERHIKVNS 136

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           +    + +   L+   +      +   N ++ LK+++S     + ++ALTL +  +    
Sbjct: 137 IDCIHTVLHQVLELAVEDDYLRYNPSDNALKELKRAHS--SDFDTRRALTLEEQQIFENY 194

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK------------- 193
                  A    I  ++   G+R+ E   L  +++  +++T+ +                
Sbjct: 195 LADSAKYAHWLPIFTVMLWTGMRVGELTGLRWEDVDFEENTISVNHTLVYFSMGKQNGCT 254

Query: 194 --------GDKIRIVPLLPSVRKAIL------EYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
                       R +P+LP VR+A+L      E   +            +F    G   +
Sbjct: 255 FAVNTPKTEAGKRAIPMLPKVREALLKEKAFQEEVGITCKAEVDGFSNFIFVNRFGNVQH 314

Query: 240 PGVFQRYIRQLRRYLGLP-------LSTTA------HTLRHSFATHLLSNGGDLRSIQSI 286
            G   + ++++ R               T       H+LRH+F T +   G +++++Q I
Sbjct: 315 QGTLNKALKRIIRDCNYELLDNSGGKEVTTLPNFSNHSLRHTFTTRMCEAGVNIKAMQDI 374

Query: 287 LGHFRLSTTQ-IYTNVNSKNGGDWM 310
           LGH  + TT  IY +   +     M
Sbjct: 375 LGHADVETTLGIYADATKELKSKEM 399


>gi|229496998|ref|ZP_04390703.1| integrase [Porphyromonas endodontalis ATCC 35406]
 gi|229316100|gb|EEN82028.1| integrase [Porphyromonas endodontalis ATCC 35406]
          Length = 384

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 114/289 (39%), Gaps = 24/289 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKR 90
           S  TLQ Y    R FL FL    + +     + +L+YT IR F    RT       +  +
Sbjct: 105 SAATLQKYNVCRRHFLEFLQ--NDYRRADIKLSELTYTVIREFDIYLRTAVGQNANTATK 162

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           ++   K+ +   +K  +      LN R   +  +    L +++ + + +        E  
Sbjct: 163 TMKTFKTIVILGQKMGVLHHDPFLNHRFHLEPVNR-GFLTDEEIMKIANKDFGIQRLEL- 220

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVR 207
               R+  I       GL   +  +LTP NI    D Q  +  + K      V LL   +
Sbjct: 221 ---VRDVFIFSCF--TGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVEANVLLLDIPK 275

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + I +Y      D           G     L       Y++++    G+  + T H  RH
Sbjct: 276 RIIAKYSGKTYRD-----------GKLFPILTNQKTNAYLKEIADLCGVKKNLTFHLARH 324

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +FAT  LS G  + S+  +LGH  + TTQIY  + +K     M ++ D+
Sbjct: 325 TFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQLADK 373


>gi|300813798|ref|ZP_07094105.1| site-specific recombinase, phage integrase family [Peptoniphilus
           sp. oral taxon 836 str. F0141]
 gi|300512088|gb|EFK39281.1| site-specific recombinase, phage integrase family [Peptoniphilus
           sp. oral taxon 836 str. F0141]
          Length = 411

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 60/336 (17%), Positives = 121/336 (36%), Gaps = 62/336 (18%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIG 84
           +++RGL   T ++Y    +QF+       E       +  +  +++R+F ++ +  Q + 
Sbjct: 80  KVKRGLKDNTFKNYIYMYQQFV-------EPTFGRIKLSDIKRSDVRSFYNRLKEDQGLM 132

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNS----LPRALNEKQALTLVD 139
             ++    + +   L+     +    +   N ++ LK +        +A+  ++   L +
Sbjct: 133 VSTIDCVHTVLHQVLELAVDDEYIRFNPSDNALKELKVAYRNESPKKKAMTIEE-QVLFE 191

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------- 191
             L ++    KW       I  ++   G+R+ E   L   +I  D   + +         
Sbjct: 192 EYLSNSDEYKKW-----YPIFIVMLWTGMRVGEVTGLQWDDIDFDNGLISVNRTLVYYSK 246

Query: 192 GKGDKIRIVPLLPSVR-------------------KAILEYYDLCPFDLNLNIQLPLFRG 232
           GKG   R     P                      + + + + +   D     +  +F  
Sbjct: 247 GKGLNNRYAINTPKTESGKRSIPMVQKVKDAFLMERELQKTFGIECCDSIDGFKDFVFLN 306

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLP---------------LSTTAHTLRHSFATHLLSNG 277
             GK  N G   + +R++ R   L                   + H  RH+F T L    
Sbjct: 307 RFGKVHNNGTLNKALRRIVRDCNLSIMDKNKSNSNDILLVPHLSNHIFRHTFTTRLNEQN 366

Query: 278 GDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMME 312
            + +++QSILGH  +STT  IY +       + M E
Sbjct: 367 INTKAMQSILGHSDISTTMDIYVDATEDFKIEQMGE 402


>gi|326335381|ref|ZP_08201569.1| mobilizable transposon [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325692446|gb|EGD34397.1| mobilizable transposon [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 410

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 117/303 (38%), Gaps = 27/303 (8%)

Query: 13  ELLKE-RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           ELL E   ++ + L  +R   K +  +   + ++ +  L  ++  ++    I      + 
Sbjct: 121 ELLDEDFVSYSEELLKKRH--KNSSDAIRINWKRVIELLKLFSGGRVKFAQIDMKFSEDF 178

Query: 72  RAFISKR-----RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           + F+        +   I   +     S  K+ LK               ++ +    S  
Sbjct: 179 KNFLLSAPCGGNKKGTISVNTSATYFSIFKAILKQAFIDGYFLSDLSGKIKGIADRESRR 238

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             L+E++      N+L  T  +   +     A L+     GLR+S+   L  + I++D  
Sbjct: 239 EYLSEEEL-----NILAKTPCDNDIL---RRASLFSAL-TGLRLSDIQRLKWKEIIEDND 289

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            + +     K + V   P  ++A+    +    +  +   LP          +P    R 
Sbjct: 290 KIELHFTQKKTKGVEYKPISKQALELCGERRDLEDLVFENLP----------DPAWISRP 339

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +++     G+  + T H  RH+FAT  L+NG D+ ++  +LGH  + TTQ Y  V  KN 
Sbjct: 340 LKKWITKAGIHKNITFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQAYAKVIDKNK 399

Query: 307 GDW 309
              
Sbjct: 400 IKA 402


>gi|306825199|ref|ZP_07458541.1| site-specific tyrosine recombinase XerS [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|304432635|gb|EFM35609.1| site-specific tyrosine recombinase XerS [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
          Length = 356

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 71/357 (19%), Positives = 128/357 (35%), Gaps = 51/357 (14%)

Query: 1   MEGNNLPEIVSFELLKERQNW--LQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEE 56
           M+   L E +  E LK+   W  L+  + +     S  TL  Y  +  +F  ++      
Sbjct: 1   MKREILLERI--EKLKQIMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGIS 58

Query: 57  ------KITIQTIRQLSYTEIRAFISKRRT----------QKIGDRSLKRSLSGIKSFLK 100
                  I +  +  +S  ++ +FI   R           Q +   ++ R+LS + S  K
Sbjct: 59  NADKIADIPLSVLENMSKKDMESFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYK 118

Query: 101 YLKKRKITTESNILNMRNLKKSNSLP--------RALNEKQALTLVDNVL--LHTSHETK 150
           YL +     +      RN+ K  S          RA N KQ L L D     L+   +  
Sbjct: 119 YLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQKLFLGDETEGFLYYIDQEY 178

Query: 151 WIDARNSA-------------ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                N A             I+ LL   G+R+SEA++L  +++      + +  KG K 
Sbjct: 179 PKTLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKR 238

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIR---GKPLNPGVFQRYIRQLRRY 253
             V +    +  + +Y  +             LF  +       ++    ++ + +    
Sbjct: 239 DSVNVAAFAKPYLEQYLAIRDKRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSE- 297

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               +  T H LRH+ AT L         +   LGH     T +YT++ +    + +
Sbjct: 298 -DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNAL 353


>gi|325851898|ref|ZP_08171031.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325484675|gb|EGC87589.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 417

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 108/278 (38%), Gaps = 17/278 (6%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
                +FL     Y  + I +Q        ++  + +K +  K+        L+ + S L
Sbjct: 142 RKHLAKFLRH--RYHVDDIPVQKADTALIKDLEEYFAKEKGFKLNTS--AGYLTMLASLL 197

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           K L KR I      +   +++     PR +  ++   +       + +E +  +  +  +
Sbjct: 198 KDLHKRHIIDIYPFIA-HSIRWDVGTPRYITREEVNRV----AALSDNELQGYEQVSRDM 252

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDL 216
                  GL  ++   LT ++I+ +     I+    K   +  +PLLP     I  Y  +
Sbjct: 253 FLFSCYTGLSYTDVYHLTAEHIIHESDMDWIRKPRVKTGNLCHIPLLPEASAIIERYRGI 312

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LS 275
                           I G          +++++ R  G+  + T H  RH+FA+ + LS
Sbjct: 313 HTRAFRHEPPKGYLLPIPGC----DTVNIHLKKIARLCGIQKTLTFHMARHTFASQMTLS 368

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G  + S+  +LGH ++ TTQ+Y   + +     + +I
Sbjct: 369 EGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKI 406


>gi|301062571|ref|ZP_07203209.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300443336|gb|EFK07463.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 283

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 102/259 (39%), Gaps = 35/259 (13%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK-- 120
           + +++ T +  FI+ ++   +   +L++ L  +     Y  + +    + +      +  
Sbjct: 6   VNRINVTTVEKFITGKQESGMNIGTLRKILVTLGQIFNYAVRHQYMDHNPLNEAERPREQ 65

Query: 121 -----KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
                +     + L+ +Q  TL+D             + +   +  L    G R  E L 
Sbjct: 66  AREGERERDKIQILSPEQIKTLLDQEK----------NPKFKMLFMLAIFTGARQGEILG 115

Query: 176 LTPQNIMDDQSTLRIQ-----------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
              ++I    S + IQ                 R + + P+V K +  +   CP     N
Sbjct: 116 AKWEDIDWKNSQIHIQRTFNKSRFFTPKTKTSTRRIDIGPTVLKELRAWKLACP----KN 171

Query: 225 IQLPLFRGIRGKPLN-PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
               LF    G P+N   + QR+ R   +   LPL    H LRH+FA+ L+  G +++ I
Sbjct: 172 EHDLLFPNGAGGPINYSNLVQRHFRPALKATSLPL-IRFHDLRHTFASLLIEQGENVKYI 230

Query: 284 QSILGHFRLSTT-QIYTNV 301
           Q+ LGH   + T  +Y ++
Sbjct: 231 QTQLGHSSPTVTLNVYAHL 249


>gi|168483221|ref|ZP_02708173.1| tyrosine recombinase XerC [Streptococcus pneumoniae CDC1873-00]
 gi|172043478|gb|EDT51524.1| tyrosine recombinase XerC [Streptococcus pneumoniae CDC1873-00]
          Length = 356

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 116/326 (35%), Gaps = 51/326 (15%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEE------KITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  +  +F  ++             I +  +  +S  ++ +FI   R     
Sbjct: 33  YSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDMESFILYLRERPLL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKR--------------------KITTESNIL 114
                 Q +   ++ R+LS + S  KYL +                     K   E+   
Sbjct: 93  NANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAA 152

Query: 115 NMRNLKKSNSLPR----ALN--EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
              N+K+   L       L   +++    + N  L + ++ K    R+ AI+ LL   G+
Sbjct: 153 RAENIKQKLFLGDETAGFLTYIDQEHPQQLSNRALSSFNKNK---ERDLAIIALLLASGV 209

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQL 227
           R+SEA++L  +++      + +  KG K   V +    +  +  Y  +            
Sbjct: 210 RLSEAVNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKTDT 269

Query: 228 PLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
            LF  +       ++    ++ + +        +  T H LRH+ AT L         + 
Sbjct: 270 ALFLTLYRGVPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVS 327

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWM 310
             LGH     T +YT++ S    + +
Sbjct: 328 HQLGHASTQVTDLYTHIVSDEQKNAL 353


>gi|23464983|ref|NP_695586.1| phage family integrase/recombinase protein [Bifidobacterium longum
           NCC2705]
 gi|23325582|gb|AAN24222.1| probable phage-family integrase/recombinase protein
           [Bifidobacterium longum NCC2705]
          Length = 276

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 59/308 (19%), Positives = 117/308 (37%), Gaps = 43/308 (13%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           ++   +   E   WL++L    GLS+ T+ +  C        L          ++   ++
Sbjct: 6   KLPPAQWRDEITLWLESLTAA-GLSQDTVNTRRCKIGHAARCLD---------KSPYDVT 55

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
             ++  + +   +Q     + K   + +  F ++L       +     +  ++K+   PR
Sbjct: 56  SEDLVHWTA---SQSWKAETRKGYRNTLVGFFRWLHATGRRADDPAAALPKVRKTRPHPR 112

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS- 186
              +      +              +     +L L    GLR+SE  ++  +++++  + 
Sbjct: 113 PCPDVHIYAAMCA-----------ANDVERLMLRLGAEAGLRLSEIAAVHSRDVLEGDAG 161

Query: 187 -TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            +L ++GKGDK RIVP+   + K I                  LF G     +      R
Sbjct: 162 PSLIVRGKGDKQRIVPISEDLAKRI------------TAAPGWLFPGRWRGHVEKSYVSR 209

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           ++ +L     LP     H+LRH +AT +     DL  +  +LGH  + TTQIY  +    
Sbjct: 210 HLTRL-----LPDGWGPHSLRHRYATRMYETTHDLLLVSKLLGHSSVETTQIYVAMPDSR 264

Query: 306 GGDWMMEI 313
               +  +
Sbjct: 265 LRVGLDAV 272


>gi|332652920|ref|ZP_08418665.1| phage integrase [Ruminococcaceae bacterium D16]
 gi|332518066|gb|EGJ47669.1| phage integrase [Ruminococcaceae bacterium D16]
          Length = 400

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 67/321 (20%), Positives = 113/321 (35%), Gaps = 53/321 (16%)

Query: 20  NWLQNLEIERG---LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
            WL     E G   L   TL+SYE   R ++          +  + + +++  +I+    
Sbjct: 73  EWLDRWMEEYGAVTLRPNTLRSYEQYIRCYVKPY-------LGGKIVSRVTRLDIQKLYR 125

Query: 77  KRRTQK-----------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           K + +            + D  + R  + +   LK  ++  I   +    ++  K +   
Sbjct: 126 KLKKEGRVHDHPEYGHELSDSMVLRIHAMLHRCLKDAERDHIVPYNPTDGVKLPKSNYKP 185

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
            + L+ +Q     D  L        W D       Y     GLR  E   L  ++  ++ 
Sbjct: 186 KQVLDREQM----DAFLAAVDKNEIWRD-----FFYTELTTGLRRGEICGLMWRDFDENA 236

Query: 186 STLRI----------------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
            TL+I                       R + L PS  + + E              L  
Sbjct: 237 GTLKILRSVNVPKRGELEIGETKTERGRRTIRLPPSTVQRLKERKKHAISQWIFPEPLA- 295

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
                 KP+ P     +++ L +  GLP     H LRH+FATH L++G D +++  ILGH
Sbjct: 296 ----PEKPVRPSAAYYWMKVLLKEAGLP-HIRFHDLRHTFATHALASGVDAKTLSGILGH 350

Query: 290 FRLS-TTQIYTNVNSKNGGDW 309
              S T   YT+V        
Sbjct: 351 TNASFTLDTYTHVTPDMQRAA 371


>gi|326385291|ref|ZP_08206951.1| phage family integrase/recombinase protein [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326195982|gb|EGD53196.1| phage family integrase/recombinase protein [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 269

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 62/287 (21%), Positives = 108/287 (37%), Gaps = 45/287 (15%)

Query: 16  KERQNWLQNLEIE-RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
                ++  L    R L    L+ Y     Q L F        +       +   E+ A+
Sbjct: 4   AAIAAFVSYLGAGGRSLETRKLRQY-----QLLCFA------DVATAAPSAVELPELVAW 52

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +     +   + + +   + +  F  +L+      ++    +  +      PR   E   
Sbjct: 53  LDH---EGWSNNTRRSVRACLVVFFTWLQATGQRPDNPARLLPTVAAKPGRPRPCPES-- 107

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQG 192
             L   V+     E          +L L    GLR +E  ++  +++    D + LR+ G
Sbjct: 108 -ALRSAVVNAAPRE--------RLMLALAATGGLRRAEIAAVRGEHVERGFDGAQLRVLG 158

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG + R+VP+   + + + +                 F   RG  L P    + I +L  
Sbjct: 159 KGGRERLVPISDELAEQLEQRRGYA------------FPSPRGGHLTPAHVGKLIARL-- 204

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
              LP   T HTLRH FA+       D+R++Q +LGH  ++TTQIYT
Sbjct: 205 ---LPPGWTTHTLRHRFASAAYRADRDIRAVQELLGHASVATTQIYT 248


>gi|325854096|ref|ZP_08171486.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325484207|gb|EGC87139.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 410

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 65/286 (22%), Positives = 108/286 (37%), Gaps = 24/286 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           SK +LQ Y    R F  FL + Y ++ I +         +   ++S          +  +
Sbjct: 129 SKDSLQKYSVLRRHFAEFLIYKYGKKDIGLAEFTPSVVQDFELYLST--AAGCAYNTSVK 186

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L  +K+   Y +KR        LN R   +  +    L +++ + + +        E  
Sbjct: 187 KLKALKTVTIYAQKRGYLLHDPFLNHRFHLEPVNR-GFLTDEEIMKIANKDFAIQRLEL- 244

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVR 207
               R+  I       GL   +  +LTP NI    D Q  +  + K      V LL   +
Sbjct: 245 ---VRDVFIFSCF--TGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPK 299

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             I +Y      D           G     L       Y++++    G+  + T H  RH
Sbjct: 300 SIIAKYSHKTYRD-----------GKLFPILTNQKTNAYLKEIADLCGVKKNLTFHLARH 348

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +FAT  LS G  + S+  +LGH  + TTQIY  + +K     M ++
Sbjct: 349 TFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQL 394


>gi|182413035|ref|YP_001818101.1| integrase family protein [Opitutus terrae PB90-1]
 gi|182414799|ref|YP_001819865.1| integrase family protein [Opitutus terrae PB90-1]
 gi|182416162|ref|YP_001821228.1| integrase family protein [Opitutus terrae PB90-1]
 gi|182416192|ref|YP_001821258.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177840249|gb|ACB74501.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177842013|gb|ACB76265.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177843376|gb|ACB77628.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177843406|gb|ACB77658.1| integrase family protein [Opitutus terrae PB90-1]
          Length = 432

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 125/294 (42%), Gaps = 16/294 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              ++ +L  ER ++ +T++ +   T  FL FL    +       ++ +S  ++ A +  
Sbjct: 142 LDPYIVHLRDERAVAPVTVKRHLAHTTAFLEFLKHDVQRPR----LKTISAEQVEAQL-- 195

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNEKQAL 135
           +R  K    +++   S ++SFL+Y      T       +   +      LPR + +    
Sbjct: 196 KRHMKDSKDNVRSLSSSLRSFLRYCADHGHTQADFSELVPRQRHYRHASLPRGIEDSALE 255

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KG 194
            ++         +TK   AR+ AI+ LL   G+R   A  L  +++   Q+ +R +  KG
Sbjct: 256 RVL-----AAIDKTKPNGARDYAIILLLMAYGIRAISAAKLVMEDLDWRQAKIRFRAQKG 310

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K  IVPLL +V  AI+E+          + ++ L        L+       ++      
Sbjct: 311 GKEVIVPLLDAVGDAIIEWLRHRDPR-TPHREVFLSTKAPHGSLSSMAISTVVKHYLHKA 369

Query: 255 GL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           G+      AH+LRHS+A   L +   +++I   LGH  + TT IY   + K   
Sbjct: 370 GVHQPGRGAHSLRHSWAIRALEHDQPIKAIADALGHRYIDTTYIYAKADLKTLR 423


>gi|331087780|ref|ZP_08336706.1| hypothetical protein HMPREF1025_00289 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330409761|gb|EGG89197.1| hypothetical protein HMPREF1025_00289 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 400

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 47/330 (14%), Positives = 107/330 (32%), Gaps = 59/330 (17%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
             K T++       +   +     +  I    ++ +    ++ F++      +   ++  
Sbjct: 79  YKKKTVK--MTTIYKNHSYYNSRVKNSIGKMYLQDIKTYHVQKFLNDLIDSGLAHGTVSN 136

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
               +   L      +   ++  + +   K+     R L +++               T 
Sbjct: 137 IRFMLSDMLDKAVLSEYIRKNPCIGVEMPKEVKKERRVLTKEEQEKFF----------TF 186

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK-------------- 196
                +  +L      G RI E L L  ++   ++  + I                    
Sbjct: 187 ASSYIHINVLKFAVTTGCRIGEVLGLKWEDCDFEKREIIINKTIHYSKASSPVEGSKFFY 246

Query: 197 --------IRIVPLLPSVRKAIL---------EYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
                    R++P+   V + +          + +    +  +   Q  +F    G P+ 
Sbjct: 247 TTAKTISSNRVIPMTDEVYEILQNQKIKQTEQKMWKRSIWKQHKEFQNLVFTCSDGSPVY 306

Query: 240 PGVFQRYIRQLRRYLG-LPLST--------------TAHTLRHSFATHLLSNGGDLRSIQ 284
                  I+     +  + +                T HTLRH++AT    NG D + +Q
Sbjct: 307 YYNVNSAIKDYVAKINVIEIELAKEEKREPKIFELFTCHTLRHTYATRCYENGVDQQVVQ 366

Query: 285 SILGHFRLS-TTQIYTNVNSKNGGDWMMEI 313
            +LGH  L+ TT +YT+V+ +   + + E+
Sbjct: 367 KLLGHSTLAMTTDLYTHVSEEKKKEEVAEL 396


>gi|150010096|ref|YP_001304839.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
 gi|149938520|gb|ABR45217.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
          Length = 382

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 57/301 (18%), Positives = 106/301 (35%), Gaps = 34/301 (11%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L  ++  S    ++Y    R     L  Y  + +    ++ +    ++ FI+  R
Sbjct: 97  EFLSELSTDK--SAHGDKAYSLRLRSLANHLRDYMPQCL----LKDIDTGFVKGFIAHLR 150

Query: 80  TQKI--GDRSLKRSLSGIKSFLKYLKKRKITTESNILNM---RNLKKSNSLPRALNEKQA 134
            Q     D ++      +   L    K+ +   +   ++       K  SL   L  ++ 
Sbjct: 151 KQPYLKSDFTIHGYYRLLNVTLNKAVKKGLILSNPCGSLDTDEKPHKPTSLRTYLTLEEL 210

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----MDDQSTLRI 190
             L+          T  +             CGLRIS+  +L  +++     D      I
Sbjct: 211 KRLI---------RTDCVCPEVKKAFLFCCFCGLRISDLTALRWEDMQKEGNDKFRLQII 261

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           Q K  +   +PL     K +       P   N N    L        L   +  + ++  
Sbjct: 262 QRKTKEAIYLPLSEEAIKYL-------PARENENDNDRLGLIFHLPSLT--IICQVLKGW 312

Query: 251 RRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
               G+     T H  RH+FAT  L+ G DL ++  +LGH  + +TQ+Y  +   +    
Sbjct: 313 TLAAGIKNKKVTFHVSRHTFATLSLALGIDLYTVCKLLGHKNIISTQVYAKIIDASKRQA 372

Query: 310 M 310
           +
Sbjct: 373 I 373


>gi|317009395|gb|ADU79975.1| integrase/recombinase (xerD) [Helicobacter pylori India7]
          Length = 355

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 122/283 (43%), Gaps = 16/283 (5%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           K T+        Q L     Y ++ + +++ R LS  ++  F+ +   Q     S+ + +
Sbjct: 69  KHTI------MMQGLFLFFDYFKDNLKLRSFRVLSEEQVINFLFEL-AQNRKPSSMAKYV 121

Query: 93  SGIKSFLKYLKKRKITTESNIL-NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
             ++ F  YL ++K  +    L N+   K   SLPR LN K     +  +L ++   +  
Sbjct: 122 MYLRQFFDYLDRKKHYSFDFALKNLAFAKTKESLPRHLNYKDLKAFLKTLLEYSPATS-- 179

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKA 209
            + RN  IL ++   GLR  E LS+  ++I  ++   ++ IQGKG K R   +  S+ + 
Sbjct: 180 FEKRNKCILLIVILGGLRKCEVLSIELKHIQVEEQNYSILIQGKGRKERKAYIKKSLLEL 239

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL----STTAHTL 265
            L  +    + L     + LF+  + K  N      +I  + +   +       T  H  
Sbjct: 240 SLNAWLSDDYRLKYFNGVYLFKKDKQKAQNSLTLYNFIPLIFKLAQIKHYKQYGTGLHLF 299

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           RHSFAT +     DL      LGH  L +T+IY +   ++   
Sbjct: 300 RHSFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHNKK 342


>gi|167758604|ref|ZP_02430731.1| hypothetical protein CLOSCI_00944 [Clostridium scindens ATCC 35704]
 gi|167663800|gb|EDS07930.1| hypothetical protein CLOSCI_00944 [Clostridium scindens ATCC 35704]
          Length = 431

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 62/315 (19%), Positives = 116/315 (36%), Gaps = 23/315 (7%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M  +    ++  E  +    +L      +     T        R++L        EK+  
Sbjct: 117 MPKHGTKYLIKAENERLIDRFLDY----KNYGPNTRDDVVWVVRRYLFHF-----EKLGH 167

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           +T+  +S  E+R FI K   + +   SL   L  +K F  +LK+  I        + + K
Sbjct: 168 ETLEHVSVDEVRKFILKTAAE-VKTSSLHNILLYLKHFHIFLKETGIPAPD-CTGLFSYK 225

Query: 121 KSNSLPR--ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
               +P    + +++   +     L        +  R+ AI+ +    GLR  + + L  
Sbjct: 226 VYRDMPIQGYVTDEELERI-----LAVIDTESDMGKRDRAIILMAATTGLRACDLIRLKL 280

Query: 179 QNIMDDQSTLR-IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
            +I   +  +R  Q K  +   VPL+  V  A+ +Y        +           +   
Sbjct: 281 SDIDWRKGEIRLCQKKTGRTVYVPLVNQVGSALQDYILNARPVSDCPEVFLRAVAPKTAI 340

Query: 238 LNPGVFQRYIRQLRRYLGLPLST----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            N        +Q ++  G+          H LR   A  LL  G  L +I  ILGH  L 
Sbjct: 341 ANAVCIGSMFQQYQKKAGIARHAFDGKGFHGLRRRLAKKLLVTGTSLTTIAQILGHDDLK 400

Query: 294 TTQIYTNVNSKNGGD 308
           + + Y +++++N  +
Sbjct: 401 SLRQYLSLDTRNLKE 415


>gi|254513557|ref|ZP_05125621.1| tyrosine recombinase [Rhodobacteraceae bacterium KLH11]
 gi|221532066|gb|EEE35063.1| tyrosine recombinase [Rhodobacteraceae bacterium KLH11]
          Length = 167

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 6/147 (4%)

Query: 176 LTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGI 233
           +   +   ++ T+ I+ GKG   R+VP+         +Y        +L    P  F   
Sbjct: 1   MRWDDFDIERGTIFIREGKGKVDRMVPIGERALLWCEKYLHEVRPQFDLTGHDPAFFLTS 60

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            G+   P    + +R       +  S + H  RHS AT +L NG D+R IQ +LGH +L 
Sbjct: 61  FGEAFTPNRMTQLVRGHINAAEIGKSGSCHLFRHSCATLMLENGADIRYIQQLLGHAKLD 120

Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           TTQIYT V+ +     + +I+  THP+
Sbjct: 121 TTQIYTQVSIRQ----LKQIHTLTHPA 143


>gi|293392349|ref|ZP_06636674.1| type 1 fimbriae regulatory protein FimB [Serratia odorifera DSM
           4582]
 gi|291425146|gb|EFE98350.1| type 1 fimbriae regulatory protein FimB [Serratia odorifera DSM
           4582]
          Length = 179

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 67/173 (38%), Gaps = 6/173 (3%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L   +   L++  L  T         R+  I+YL +  GLR+SE  SL   +I  ++ 
Sbjct: 5   KHLTGNEIEKLLEISLEGT------HGVRDYCIVYLSFTHGLRVSELCSLRLSDIDLEER 58

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           T+ I    +    +  L      +L  +     + N      +F   +G  ++       
Sbjct: 59  TICIYRLKNGFSTIHPLRDKEVVMLRAWFKLRDEFNGADSEWVFLSAKGLKISRKRVYSL 118

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           I  L     +P+    H LRHS    L   G D R IQ  LGH  +  T  YT
Sbjct: 119 ISNLGVMANIPVKVHPHMLRHSCGFALADQGVDTRLIQDYLGHRNIQHTVTYT 171


>gi|170732631|ref|YP_001764578.1| integrase family protein [Burkholderia cenocepacia MC0-3]
 gi|169815873|gb|ACA90456.1| integrase family protein [Burkholderia cenocepacia MC0-3]
          Length = 429

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 97/269 (36%), Gaps = 35/269 (13%)

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
             ++ +K   + +   +  R L+ ++       +  +  E  +  ++ LK+S+   R L+
Sbjct: 157 FESWRAKCLDKGLSTATTNRDLAALRGLFSRAVEWGVVAEHPMRTVKALKESSGKVRWLS 216

Query: 131 EKQALTLVDNVLLHTSHETKWIDARN-----------------------SAILYLLYGCG 167
           + +   L   +      E    D+ N                          + L    G
Sbjct: 217 DDEEDRLRIALDAREERERSARDSANVWRKARGYELLEDLRTVPFVDYLKPAVLLSLNTG 276

Query: 168 LRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
           +R  E L L    +  + S L +     K  K R +PL      A+ ++          +
Sbjct: 277 MRQGELLKLRWGRVDLENSILTVSDETAKSGKQRHIPLNDEALTALKQWRQQ------QS 330

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
               +F G  G        +    +L +   +      H +RH FA+ L+  G DL +++
Sbjct: 331 RFDVVFAGDSGAV--RTDVKTAWARLLKDAQIQ-DFRWHDMRHHFASRLVMAGVDLNTVR 387

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            +LGH  ++ T  Y ++  ++    + ++
Sbjct: 388 ELLGHSDMTMTLRYAHLAPEHKAAAVAKL 416


>gi|237710496|ref|ZP_04540977.1| integrase [Bacteroides sp. 9_1_42FAA]
 gi|229455218|gb|EEO60939.1| integrase [Bacteroides sp. 9_1_42FAA]
          Length = 406

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 95/257 (36%), Gaps = 17/257 (6%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNL 119
             + L+YT +R F    R +     ++ + +  +++ +     +             + +
Sbjct: 144 DFKDLTYTFLRDFEQYLREKGNAVNTIAKHMRQLRTLVNEAINQGYMHADAYPFRKYK-I 202

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K+       L   +   L          E + +     A L+  Y  GLR S+   LTP+
Sbjct: 203 KQEKGRHEFLIPDELKKL-----ETVEVEEESMRHVLDAFLFCCY-TGLRYSDFCQLTPE 256

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           N       +RI GK   +    +   V   +  +       L    + P    +   P N
Sbjct: 257 NF------IRINGK-RWLYFKSVKTGVEIRLPLHLLFESRALGSLDRYPDIGSLAALPCN 309

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                R +R+L    G+    T H  RH+ AT L+  G  + ++Q +LGH  + TTQIY+
Sbjct: 310 SE-VNRQLRKLAGLCGIKKRITYHVSRHTCATLLIHQGVAITTVQKLLGHTSVKTTQIYS 368

Query: 300 NVNSKNGGDWMMEIYDQ 316
            + S      +     +
Sbjct: 369 EILSSTIVRDLKNAQKK 385


>gi|72160618|ref|YP_288275.1| site-specific recombinase XerD [Thermobifida fusca YX]
 gi|71914350|gb|AAZ54252.1| similar to Site-specific recombinase XerD [Thermobifida fusca YX]
          Length = 277

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 81/235 (34%), Gaps = 9/235 (3%)

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           +     ++   IR +++    +   D  +      ++ F ++         + +L M   
Sbjct: 28  VTDWADVTRAHIRGWLACLFARGYTDSYVNNQYRCLQQFFRWFA-EDEEVPNIMLGMTPP 86

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           + +       ++ +   L       T         R+ AIL  L   G+R+SE   L   
Sbjct: 87  RVAEKPVPVFSDDEIRALF-----ATVQGRDIWSRRDLAILLFLRDTGVRLSELSGLQLD 141

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           ++   +    + GK  + R V       +A+ +Y  +     + ++   ++ G +  PL 
Sbjct: 142 DVDVVEREATVTGKAKRTRTVKYSFEAARALDKYLRMRAKHAHAHVS-AVWIGPK-GPLT 199

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
                + +++     GL      H  RH F+   L  GG    +  + G      
Sbjct: 200 DSGIYQLVQRRAAQAGLQ-GVHPHRFRHHFSHTWLDRGGAEGDLMELNGWNSPQM 253


>gi|210616044|ref|ZP_03290916.1| hypothetical protein CLONEX_03135 [Clostridium nexile DSM 1787]
 gi|210149952|gb|EEA80961.1| hypothetical protein CLONEX_03135 [Clostridium nexile DSM 1787]
          Length = 400

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 47/330 (14%), Positives = 106/330 (32%), Gaps = 59/330 (17%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
             K T++       +   +     +  I    ++ +    ++ F++      +   ++  
Sbjct: 79  YKKKTVK--MTTIYKNHSYYNSRVKNSIGKMYLQDIKTYHVQKFLNDLIDSGLAHGTVSN 136

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
               +   L      +   ++  + +   K+     R L  ++               T 
Sbjct: 137 IRFMLSDMLDKAVLSEYIRKNPCIGVEMPKEVKKERRVLTREEQEKFF----------TF 186

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK-------------- 196
                +  +L      G RI E L L  ++   ++  + I                    
Sbjct: 187 ASSYIHINVLKFAVTTGCRIGEVLGLKWEDCDFEKREIIINKTIHYSKASSPVEGSKFFY 246

Query: 197 --------IRIVPLLPSVRKAIL---------EYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
                    R++P+   V + +          + +    +  +   Q  +F    G P+ 
Sbjct: 247 TTAKTISSNRVIPMTDEVYEILQNQKMKQTEQKMWKRSIWKQHKEFQNLVFTCSDGSPVY 306

Query: 240 PGVFQRYIRQLRRYLG-LPLST--------------TAHTLRHSFATHLLSNGGDLRSIQ 284
                  I+     +  + +                T HTLRH++AT    NG D + +Q
Sbjct: 307 YYNVNSAIKDYVEKINVIEIELAKEEKREPKIFELFTCHTLRHTYATRCYENGVDQQVVQ 366

Query: 285 SILGHFRLS-TTQIYTNVNSKNGGDWMMEI 313
            +LGH  L+ TT +YT+V+ +   + + E+
Sbjct: 367 KLLGHSTLAMTTDLYTHVSEEKKKEEVAEL 396


>gi|317057903|ref|YP_004106370.1| integrase family protein [Ruminococcus albus 7]
 gi|315450172|gb|ADU23736.1| integrase family protein [Ruminococcus albus 7]
          Length = 324

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 57/330 (17%), Positives = 123/330 (37%), Gaps = 51/330 (15%)

Query: 25  LEIERGLSKLTLQSY--------------ECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           +  E+  S  T++ Y                   +    L +     I    +++L+  +
Sbjct: 1   MLFEKQ-SNNTVEEYMTKWLINTKRPSLKRSSYDRVEQSLNYQIFPAIGKIKLKKLTADD 59

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRA 128
           I+  ++    +     + K++   +KS L     +    ++ IL++   K  KS+     
Sbjct: 60  IQMMLNNLSERS-SYSTTKKAYVNLKSCLDLAVLKGDIKKNPILSVVLPKNNKSDETVVY 118

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
            + +QA   +    + T +   +       I+  +   GLR+ EAL+L+  ++      +
Sbjct: 119 YSPEQARA-IAAEAISTYNNGSFKYRYGYFIV-FMLNTGLRVGEALALSWSDVDFTNKIV 176

Query: 189 RIQ-----------------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
            +                           + +R VPL  +   A+++ + +      +  
Sbjct: 177 YVHNSVSSVKTRGDSSMKYEKIVNSPKSRNSVRYVPLNKTALDALVKIHAI------MGD 230

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQ 284
              +     G  ++P    R + ++ +  G+       H LRH+FAT LL  G D++ + 
Sbjct: 231 NDRIVTTENGLLVDPSAIHRTMSRILKNCGINGKKDIVHALRHTFATLLLRQGTDIKVVS 290

Query: 285 SILGHFRLSTTQI-YTNVNSKNGGDWMMEI 313
            ILGH  +S T   Y +V  +     M ++
Sbjct: 291 EILGHSDISITMKFYYHVIEEQKKTAMTKL 320


>gi|282857147|ref|ZP_06266392.1| site-specific recombinase XerD [Pyramidobacter piscolens W5455]
 gi|282585016|gb|EFB90339.1| site-specific recombinase XerD [Pyramidobacter piscolens W5455]
          Length = 318

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 56/319 (17%), Positives = 116/319 (36%), Gaps = 29/319 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  Q++L      +  +  T + Y    RQF           + ++T          AF+
Sbjct: 20  EAAQSFLTCKTAAK-AAPKTCKEYAKTIRQFFAAFPQAWSSPLKMRT----------AFL 68

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT--TESNILNMRNLKKSNSLPRALNEKQ 133
           S   +Q++   +    L  +++F ++  + +I          ++      S P    +  
Sbjct: 69  SWL-SQEVAPATYNLQLIYVRAFWRWCVEERIQPPEPDPFRGLKR----RSAPGRFRDID 123

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG- 192
           A  + +  LL     + W   R+ A++        R  EAL L P +       + I   
Sbjct: 124 AAKVKE--LLALPDRSTWAGLRDYALILFTLDTAARPGEALQLLPADFNFSSLAVVIPAH 181

Query: 193 --KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
             K  + RI+PL P+   A+       P +   + ++ +F  + G+      +   ++  
Sbjct: 182 AAKTREERIIPLSPTTAAALRHVIQRRPRE--WDAEMYVFASVTGRRFAVERWNDRLKGY 239

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD-- 308
           R   G       + LRH+  T  L  G     +Q ++GH     TQ Y ++ + +     
Sbjct: 240 RLKDGTTFK--PYDLRHAACTLHLRAGMSGEVLQRLMGHHGPQMTQRYIHLTADDLRKEQ 297

Query: 309 WMMEIYDQTHPSITQKDKK 327
            +     +  P+  +  +K
Sbjct: 298 ALSSPVGRLVPARKRAPRK 316


>gi|289167902|ref|YP_003446171.1| integrase/ recombinase [Streptococcus mitis B6]
 gi|288907469|emb|CBJ22306.1| integrase/ recombinase [Streptococcus mitis B6]
          Length = 356

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 116/326 (35%), Gaps = 51/326 (15%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYT------EEKITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  +  +F  ++             I +  +  +S  ++ +FI   R     
Sbjct: 33  YSFTTLYEYLKEYYRFFSWVLESGISNADKMADIPLSVLENMSKKDMESFILYLRERPLL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKR--------------------KITTESNIL 114
                 Q +   ++ R+LS + S  KYL +                     K   E+   
Sbjct: 93  NANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAA 152

Query: 115 NMRNLKKSNSLPR----ALN--EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
              N+K+   L       L   +++    + N  L + ++ K    R+ AI+ LL   G+
Sbjct: 153 RAENIKQKLFLGDETEGFLTYIDQEYPQQLSNRALSSFNKNK---ERDLAIIALLLASGV 209

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQL 227
           R+SEA++L  +++      + +  KG K   V +    +  +  Y  +            
Sbjct: 210 RLSEAVNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKTDT 269

Query: 228 PLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
            LF  +       ++    ++ + +        +  T H LRH+ AT L         + 
Sbjct: 270 ALFLTLYRGVPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVS 327

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWM 310
             LGH     T +YT++ +    + +
Sbjct: 328 HQLGHASTQVTDLYTHIVNDEQKNAL 353


>gi|170769298|ref|ZP_02903751.1| integrase [Escherichia albertii TW07627]
 gi|300901680|ref|ZP_07119738.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|170121950|gb|EDS90881.1| integrase [Escherichia albertii TW07627]
 gi|300354904|gb|EFJ70774.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
          Length = 330

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 59/299 (19%), Positives = 113/299 (37%), Gaps = 39/299 (13%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-----EKITIQTIRQLSYTEIRA 73
           + W      +R LS+L    +  D R      ++         ++      Q++   +  
Sbjct: 49  KPWQAKPADQRRLSELLDAWWMLDGRNQAYGDSYRVRLGKVVREMGDPRASQMTRKFMLE 108

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + S++    +   S+ R L  + +     ++       + +  +R LK  N+    L++ 
Sbjct: 109 YRSEKLQAGLMPSSINRDLCVLSTMFTVLIEAEVFHNANPVRGIRKLKVQNTEMAFLSDD 168

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L++            ++     +  L    G R SEA  L  ++I+ ++ T     
Sbjct: 169 EIERLLE-----------RLEGDARRVAILCLSTGARWSEASELRGEHIVGNRVTF-FNT 216

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K  K R VP+  SV                     PL +  R   L    + ++   L+ 
Sbjct: 217 KNGKSRSVPVADSVV--------------------PLIKTRRTGLLYQVDYLKFREILQE 256

Query: 253 -YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               LP     H +RH+FATH + NGG++ ++Q ILGH  +  T  Y + +     D +
Sbjct: 257 VKPDLPKGQATHVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYAHFSPDFLLDAI 315


>gi|121594246|ref|YP_986142.1| phage integrase family protein [Acidovorax sp. JS42]
 gi|120606326|gb|ABM42066.1| phage integrase family protein [Acidovorax sp. JS42]
          Length = 417

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 64/368 (17%), Positives = 126/368 (34%), Gaps = 62/368 (16%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
               LP++ + +       WL   +     S  TL SY  +  + L++      + ++  
Sbjct: 53  RAQGLPQVAANDDRSAVLAWLARYKD----SPATLASYRKEAERLLLWCVHQYGKALS-- 106

Query: 62  TIRQLSYTEIRAFISK--------RRTQKIGDRS---------------LKRSLSGIKSF 98
            +    +    +F+           +  +   RS                +++LS + S 
Sbjct: 107 DLTHEDFLVYESFLEDPQPVDRWVMQVAQKAPRSSPHWRPFAKPLDRQSQRQALSILNSL 166

Query: 99  LKYLKKRKITTESNIL--NMRNLKKSNSLPRALNEK---QALTLVDNVLLHTSHETKWID 153
             +L +      + +     +++ +     R L  +   Q    ++++   T        
Sbjct: 167 FNWLVQAGYLAGNPLALRRRKSVARPAKTSRFLPHEHWAQVRATIESLPTGTP-RLALQA 225

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-------TLRIQGKGDKIRIVPLLPSV 206
           AR   +  LLY  GLRISE  + +  +    +         L I+GKGDK R +P    +
Sbjct: 226 ARYRWLFSLLYIGGLRISEVCNNSMGDFYWRRGADGHERWWLEIRGKGDKTRAIPATDEL 285

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIR----GKPLNPGVFQRYIRQLRRY--------- 253
              ++ Y +     L       L   +      +P+        I+ + R          
Sbjct: 286 VSELMRYRNARNLALLPREGDTLPLLLPLIGGCRPMGRSGVHELIKDIFRKTAARLRNLG 345

Query: 254 ------LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                        +AH +RH+  TH   N  DL++++  LGH  ++TT IY +       
Sbjct: 346 TDHEAAAAHVEQASAHWMRHTAGTHQSDN-MDLKAVRDNLGHANIATTSIYLHTEDDTRH 404

Query: 308 DWMMEIYD 315
           D     + 
Sbjct: 405 DQTSNAHK 412


>gi|92117406|ref|YP_577135.1| phage integrase [Nitrobacter hamburgensis X14]
 gi|91800300|gb|ABE62675.1| phage integrase [Nitrobacter hamburgensis X14]
          Length = 313

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 60/285 (21%), Positives = 113/285 (39%), Gaps = 10/285 (3%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N+ P         +   WL +L +  G S+ T+  YE D R     L   T +   +  +
Sbjct: 19  NDSPWPTPLPFDPDSMFWLDSL-LRGGASRSTIGCYERDIRHVSAALG--TNDAAALTRL 75

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
            Q     I  F +        + ++ R  S ++SF ++L   +    S +L+ R      
Sbjct: 76  NQSVLECITKFWT---ANGAAESTIFRRFSSLRSFARFLMLERSYDCSTLLSSRFPPSGR 132

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           +   A++ +   T++ +       +  W   R+ A++ L    GL  +E  +L  ++   
Sbjct: 133 NRREAISGEAIETILSSS--TCDWDHSWTRLRDCAVVQLAASSGLTTAELTALNRRHYDA 190

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
             + +R+ G     R+  +     + +  Y D  PFDL+     PLF   R   L+    
Sbjct: 191 RLAKVRVCGSHLHSRLGIVSREAARWLTRYLDEVPFDLSPG--GPLFVTTRRTRLSARSL 248

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           Q   R+LR+  G+       +LR++ A   + +G     +   LG
Sbjct: 249 QASFRRLRQTAGVSRHAVPSSLRNAVAEKFVRSGATPEVLAKALG 293


>gi|304382547|ref|ZP_07365042.1| integrase [Prevotella marshii DSM 16973]
 gi|304336378|gb|EFM02619.1| integrase [Prevotella marshii DSM 16973]
          Length = 406

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 66/320 (20%), Positives = 132/320 (41%), Gaps = 33/320 (10%)

Query: 14  LLKERQNWL----QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLS 67
           LL+    +L    + + I+R L    L++Y+      L  L  Y ++K  +  I   QL 
Sbjct: 110 LLESFGEYLTQTKERIGIDRALKTFKLRTYQ------LSLLREYVQKKHKVSDIPLSQLD 163

Query: 68  YTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
              I  F       +++   S+  ++S +++ ++   K+ +      L   + ++    P
Sbjct: 164 KAFIEGFEYYLTIDRRLKRSSISSTVSTLQTIVRMAVKKGVLDFYPFLGY-SYERPKGEP 222

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARN-SAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           R++ +++   ++D        E KW + R    +       GL IS+  +L  +NI+ ++
Sbjct: 223 RSITQEELEHIIDL-------EIKWENYRIVRDLFVFSCFSGLAISDVRNLREENIVLEE 275

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             L I+G+  K +    +  +  A                 +P             V   
Sbjct: 276 GELCIKGRRMKTKTPYRVQVLPPAQTIMNRYRGIRAGFVFDVP----------TTDVILN 325

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            +  ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQ+Y  V+S+
Sbjct: 326 GMHYIQRNIGMETPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSE 385

Query: 305 NGGDWMMEIYDQTHPSITQK 324
                M  +  +   + T K
Sbjct: 386 RIHRDMQIVQQRIQDTFTLK 405


>gi|228924542|ref|ZP_04087741.1| Integrase-recombinase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228835124|gb|EEM80566.1| Integrase-recombinase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 390

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 65/313 (20%), Positives = 121/313 (38%), Gaps = 34/313 (10%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE--------KITIQTIRQLSYTEIRAF 74
           ++++ ++   + T +SY  +   F   +  + EE        +     ++ L    IR +
Sbjct: 75  KDMDEKKNRKEDTKKSYISEILSFCQCMVQHAEEFELNGEEVQQKDSLLKTLQPWHIRKY 134

Query: 75  ISKRRT-------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--NLKKSNSL 125
            S  +        +     +L +    I+SFLK+L       +     ++  N+ + +  
Sbjct: 135 NSWLKRVENGRNGETYAVATLAKKTVLIRSFLKHLHVFSYIEKPLHEELQRANVNEQDRP 194

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDD 184
            R L+  + + ++           +     N  IL  L   G RI E  +   ++   D 
Sbjct: 195 NRDLSYDEVMKILGFY-------KERGHLVNYTILLALASTGARIQELCTARVKDLHYDG 247

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGV 242
           +  L+I GKGDK+R + +   + + I E          L+   + P+F   RG   N   
Sbjct: 248 KYWLKITGKGDKVRELFISEHLYQCICEMRLRRGCQTVLDKGDESPVFINQRGNTYNSKT 307

Query: 243 FQRYIRQLRRYLGLPL------STTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTT 295
               +  + +   L          TAHT RH+FA   +  G  DL  +   LGH  + TT
Sbjct: 308 LSNQVTDMIKKTNLEFLLYRENPVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTT 367

Query: 296 QIYTNVNSKNGGD 308
           +IY   + K   +
Sbjct: 368 KIYLEKHMKRKNN 380


>gi|198277086|ref|ZP_03209617.1| hypothetical protein BACPLE_03294 [Bacteroides plebeius DSM 17135]
 gi|270296266|ref|ZP_06202466.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|198269584|gb|EDY93854.1| hypothetical protein BACPLE_03294 [Bacteroides plebeius DSM 17135]
 gi|270273670|gb|EFA19532.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 268

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 45/297 (15%), Positives = 111/297 (37%), Gaps = 35/297 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +N+   L  +  +++ T+ +Y    +++        +  + +           + ++  
Sbjct: 3   IENFETYLR-QGNMAENTIAAYLYAVKEYYSRHKELNKRNLLV----------YKTYLI- 50

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +K   +++   +  +  +L  + K ++        ++++K        L  +  ++ 
Sbjct: 51  ---EKFKPKTVNLRIQAMNKYLDSMGKSRL-------RLKSVKVQQR--SYL--ENVISN 96

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            D   L    + +        ++  L   G R+SE + +  +++        I  KG KI
Sbjct: 97  ADYAFLKNKLKKEENQEW-YFVVRFLAATGARVSELIQMKAEHV--QMGYFDIYTKGGKI 153

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R + +  S+RK   E+               LF    G+ +      + ++      GL 
Sbjct: 154 RRIYIPKSLRKEATEWLSKVN-----RTTGYLFLNRFGERITTRGIAQQLKNYAAKYGLN 208

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                 H+ RH FA + L    D+  +  ++GH  + TT+IY   +S    + + ++
Sbjct: 209 EKVVYPHSFRHRFAKNFLEKFNDISLLADLMGHESIETTRIYLRRSSAEQQEIVDKV 265


>gi|148998414|ref|ZP_01825856.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|168486439|ref|ZP_02710947.1| tyrosine recombinase XerC [Streptococcus pneumoniae CDC1087-00]
 gi|168492506|ref|ZP_02716649.1| tyrosine recombinase XerC [Streptococcus pneumoniae CDC0288-04]
 gi|168493084|ref|ZP_02717227.1| tyrosine recombinase XerC [Streptococcus pneumoniae CDC3059-06]
 gi|221231872|ref|YP_002511024.1| tyrosine recombinase XerC [Streptococcus pneumoniae ATCC 700669]
 gi|225858946|ref|YP_002740456.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           70585]
 gi|307067680|ref|YP_003876646.1| integrase [Streptococcus pneumoniae AP200]
 gi|254799372|sp|C1C7D0|XERS_STRP7 RecName: Full=Tyrosine recombinase xerS
 gi|254799373|sp|B8ZQ39|XERS_STRPJ RecName: Full=Tyrosine recombinase xerS
 gi|147755811|gb|EDK62856.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|183570539|gb|EDT91067.1| tyrosine recombinase XerC [Streptococcus pneumoniae CDC1087-00]
 gi|183573317|gb|EDT93845.1| tyrosine recombinase XerC [Streptococcus pneumoniae CDC0288-04]
 gi|183576613|gb|EDT97141.1| tyrosine recombinase XerC [Streptococcus pneumoniae CDC3059-06]
 gi|220674332|emb|CAR68878.1| tyrosine recombinase XerC [Streptococcus pneumoniae ATCC 700669]
 gi|225721283|gb|ACO17137.1| tyrosine recombinase XerC [Streptococcus pneumoniae 70585]
 gi|306409217|gb|ADM84644.1| Integrase [Streptococcus pneumoniae AP200]
          Length = 356

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 116/326 (35%), Gaps = 51/326 (15%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEE------KITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  +  +F  ++             I +  +  +S  ++ +FI   R     
Sbjct: 33  YSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDMESFILYLRERPLL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKR--------------------KITTESNIL 114
                 Q +   ++ R+LS + S  KYL +                     K   E+   
Sbjct: 93  NANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAA 152

Query: 115 NMRNLKKSNSLPR----ALN--EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
              N+K+   L       L   +++    + N  L + ++ K    R+ AI+ LL   G+
Sbjct: 153 RAENIKQKLFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNK---ERDLAIIALLLASGV 209

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQL 227
           R+SEA++L  +++      + +  KG K   V +    +  +  Y  +            
Sbjct: 210 RLSEAVNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKTDT 269

Query: 228 PLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
            LF  +       ++    ++ + +        +  T H LRH+ AT L         + 
Sbjct: 270 ALFLTLYRGVPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVS 327

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWM 310
             LGH     T +YT++ S    + +
Sbjct: 328 HQLGHASTQVTDLYTHIVSDEQKNAL 353


>gi|309778493|ref|ZP_07673388.1| putative site-specific recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308913748|gb|EFP59593.1| putative site-specific recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 352

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 56/346 (16%), Positives = 124/346 (35%), Gaps = 50/346 (14%)

Query: 10  VSFELLKERQNWL-QNLE--IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
             F+ +   + WL   L+  ++      T  S       F  ++  +    +    +  +
Sbjct: 20  TPFDHMPTLEEWLFYYLKHFVKPSSKPNTYAS-------FRSYICSHICPLLGDYALCDI 72

Query: 67  SYTEIRAFISKRRTQK-------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
               ++A+++ +           +  ++LK  ++ ++   K   +  I +      +   
Sbjct: 73  CEAVLQAYVNIKYENGRLDGKGGLSVKTLKEHITVLRLAFKRAIQLGIISYDPCRCVEYP 132

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K+       L+ ++        L          ++    ++ L    GLRI E  +L   
Sbjct: 133 KEVKKEVSVLSVQE-----QENLTTAISPVYRENSMLPVLIAL--HAGLRIGEVSALRID 185

Query: 180 NIMDDQSTLRI-----------------------QGKGDKIRIVPLLPSVRKAILEYYDL 216
           +I   +  +R+                         K  ++R VP+  ++  A+  Y   
Sbjct: 186 DICLSKRVIRVDESLNRVMTYEEDGTIHCPLLYQSTKSSRVRRVPMNETLYAALNVYLAT 245

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
            P  L  +   PLFR   G  + P     +  +L     +      H+LRH+FAT  L  
Sbjct: 246 MPKQLKADEHAPLFRTSGGNVMEPRRITYHFHKLLERAEIQ-GIHFHSLRHTFATRALEA 304

Query: 277 GGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQTHPSI 321
           G  ++   ++LGH   + T+ +Y + +       + ++ D +HP +
Sbjct: 305 GIPMKYCSAMLGHASTAITENLYAHASEDQLKKEIKKL-DASHPPV 349


>gi|306829526|ref|ZP_07462716.1| phage integrase family integrase/recombinase [Streptococcus mitis
           ATCC 6249]
 gi|304428612|gb|EFM31702.1| phage integrase family integrase/recombinase [Streptococcus mitis
           ATCC 6249]
          Length = 360

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 116/326 (35%), Gaps = 51/326 (15%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  +  +F  ++             I +  +  +S  ++ +FI   R     
Sbjct: 37  YSFTTLYEYLKEYDRFFSWVLESGISNADKMADIPLSVLENMSKKDMESFILYLRERPLL 96

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKR--------------------KITTESNIL 114
                 Q +   ++ R+LS + S  KYL +                     K   E+   
Sbjct: 97  NANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAA 156

Query: 115 NMRNLKKSNSLPR----ALN--EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
              N+K+   L       L   +++    + N  L + ++ K    R+ AI+ LL   G+
Sbjct: 157 RAENIKQKLFLGDETEGFLTYIDQEYPQQLSNRALSSFNKNK---ERDLAIIALLLASGV 213

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQL 227
           R+SEA++L  +++      + +  KG K   V +    +  +  Y  +            
Sbjct: 214 RLSEAVNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKTDT 273

Query: 228 PLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
            LF  +       ++    ++ + +        +  T H LRH+ AT L         + 
Sbjct: 274 ALFLTLYRGVPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVS 331

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWM 310
             LGH     T +YT++ +    + +
Sbjct: 332 HQLGHASTQVTDLYTHIVNDEQKNAL 357


>gi|317501367|ref|ZP_07959569.1| transposase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|325263258|ref|ZP_08129993.1| transposase [Clostridium sp. D5]
 gi|328948774|ref|YP_004366111.1| integrase family protein [Treponema succinifaciens DSM 2489]
 gi|316897231|gb|EFV19300.1| transposase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|324031651|gb|EGB92931.1| transposase [Clostridium sp. D5]
 gi|328449098|gb|AEB14814.1| integrase family protein [Treponema succinifaciens DSM 2489]
          Length = 397

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 53/292 (18%), Positives = 110/292 (37%), Gaps = 34/292 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +    E+ +   +I  +  ++ + +  + + +    +++      +K+      +     
Sbjct: 110 MRILEEDSLGACSIESVKLSDAKEWALRMKDKGYSFKTINNHKRSLKAAFYTAIQDDCIR 169

Query: 110 ESNI-LNMRNLKKSNSLPRA-LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     +  + + N+ P+  L+  Q  + +  V     ++  + +      + +L G G
Sbjct: 170 KNPFDFQLNTVLEDNTEPKVPLSPTQEASFLSFVQSDKVYQKYYDE------IIILLGTG 223

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAIL 211
           LRISE   LT  +I  +   + +                      IR +P+   V +A  
Sbjct: 224 LRISELCGLTESDIDFEHKLINVDHQLLKVSGVGYHVETPKTKSGIRQIPMSTKVYEAFK 283

Query: 212 EYYDLCPFDLN---LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTA 262
              +      N         LF    G P     F+   R L +         LP  TT 
Sbjct: 284 RVLNDRGRADNFIVGGYSRFLFLNRNGLPKVAVNFETMFRGLVKKYNKSHEEALPKVTTP 343

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           HTLRH+F T+L + G + +++Q I+GH  ++ T   Y +  S +    M  +
Sbjct: 344 HTLRHTFCTNLANAGMNPKALQYIMGHSNINMTLNYYAHATSDSAMAEMERL 395


>gi|313888363|ref|ZP_07822033.1| site-specific recombinase, phage integrase family [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312845643|gb|EFR33034.1| site-specific recombinase, phage integrase family [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 411

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 121/336 (36%), Gaps = 62/336 (18%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIG 84
           +++RGL   T ++Y    +QF+       E       +  +  +++R+F ++ +  Q + 
Sbjct: 80  KVKRGLKDNTFKNYIYMYQQFV-------EPTFGRIKLSDIKRSDVRSFYNRLKEDQGLM 132

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNS----LPRALNEKQALTLVD 139
             ++    + +   L+     +    +   N ++ LK +        +A+  ++   L +
Sbjct: 133 VSTIDCVHTVLHQVLELAVDDEYIRFNPSDNALKELKVAYRNESPKKKAMTIEE-QVLFE 191

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------- 191
             L ++    KW       I  ++   G+R+ E   L   ++  D   + +         
Sbjct: 192 EYLSNSDEYKKW-----YPIFIVMLWTGMRVGEVTGLQWDDLDFDNGLINVNRTLVYYSK 246

Query: 192 GKGDKIRIVPLLPSVR-------------------KAILEYYDLCPFDLNLNIQLPLFRG 232
           GKG   R     P                      + + + + +   D     +  +F  
Sbjct: 247 GKGLNNRYAINTPKTESGKRSIPMVQKVKDAFLMERELQKTFGIECCDSIDGFKDFVFLN 306

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLP---------------LSTTAHTLRHSFATHLLSNG 277
             GK  N G   + +R++ R   L                   + H  RH+F T L    
Sbjct: 307 RFGKVHNNGTLNKALRRIVRDCNLSIMDKNKSNSNDILLVPHLSNHIFRHTFTTRLNEQN 366

Query: 278 GDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMME 312
            + +++QSILGH  +STT  IY +       + M E
Sbjct: 367 INTKAMQSILGHSDISTTMDIYVDATEDFKIEQMGE 402


>gi|148983887|ref|ZP_01817206.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP3-BS71]
 gi|147924034|gb|EDK75146.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP3-BS71]
 gi|301799575|emb|CBW32127.1| putative phage integrase/recombinase [Streptococcus pneumoniae
           OXC141]
          Length = 265

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 114/298 (38%), Gaps = 36/298 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++  +L+   GL++ T++ Y    R FL                 +L   ++  +    
Sbjct: 2   KDFELHLKKA-GLAENTVRLYLYGVRFFLENY--------------ELKMEDLFEYKGYL 46

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                  +++   L G+  +L ++    +        ++ +K        L  +  ++  
Sbjct: 47  LDN-FKPKTVNLRLQGVNKYLAFIGHDDL-------KLKFVKVQQKP--FL--EDVISHA 94

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D + L  S +   I      +++ L   G R+SE + L  +++  +     I  KG KIR
Sbjct: 95  DYLFLKRSLKKDGILKW-HFVVWFLGATGARVSELIKLKVEHV--EIGYFDIYSKGGKIR 151

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-P 257
            + +   +R + L +      +        LF     +P+      + ++       + P
Sbjct: 152 RLYIPKKLRNSCLSWL-----ESENRRSGYLFLNKFNEPITARGVAQQLKNYADKYKMNP 206

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                H+ RH FA + L+   D+  +  ++GH  + TT+IY    +    + + +I +
Sbjct: 207 KVIYPHSFRHLFAKNFLAKYNDIALLADLMGHESIETTRIYLRKTATEQQNIVDKIVN 264


>gi|254250671|ref|ZP_04943990.1| Phage integrase [Burkholderia cenocepacia PC184]
 gi|124879805|gb|EAY67161.1| Phage integrase [Burkholderia cenocepacia PC184]
          Length = 578

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 69/339 (20%), Positives = 122/339 (35%), Gaps = 51/339 (15%)

Query: 16  KERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           KE +  +    +ERG  LS LT +    D   +  F+   T  +  +  +R     + R 
Sbjct: 247 KEAERLILWAIVERGRALSSLTTE----DALAYRAFIRRPTPHERWVGPVRPRGAPDWRP 302

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F     +  +  RS   +LS + +  ++L +++    +    ++   +      AL+   
Sbjct: 303 F-----SGALSARSAAYTLSVLGALFRWLIEQRYVLANPFAGVKV--RDTRGATALDTSH 355

Query: 134 ALTLVDNVLLHTSHE-----------------TKWIDARNSAILYLLYGCGLRISEALSL 176
           A T  + +L+ T  +                 T     R   IL   Y  GLR SE +  
Sbjct: 356 AFTEGEWLLVRTIADGLEFGKRPVKGAPQSGWTPAAAQRLRFILDFGYATGLRASELVGA 415

Query: 177 TPQNIMDDQS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLF 230
           T  +I  D      L++ GKG K   V L P  R A+  Y       +         PL 
Sbjct: 416 TLGDIETDAHGDAWLKVIGKGGKAARVALPPLARTALDRYLVARRLPVTPARWRPDTPLI 475

Query: 231 RGIRGK---PLNPGVFQRYIRQLRRY------------LGLPLSTTAHTLRHSFATHLLS 275
             +       +      + +++                       + H +RH+ ATH L+
Sbjct: 476 PRVAEDDAAAITSVRLWKVMQRFFAQTADAVEADHPALAHKLRQASPHWMRHTHATHALA 535

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            G +L +++  L H  +STT IY + +       M   +
Sbjct: 536 RGAELTTVRDNLRHASISTTSIYLHGDDVKRARQMSSAF 574


>gi|225856836|ref|YP_002738347.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           P1031]
 gi|254799377|sp|C1CKQ9|XERS_STRZP RecName: Full=Tyrosine recombinase xerS
 gi|225724947|gb|ACO20799.1| tyrosine recombinase XerC [Streptococcus pneumoniae P1031]
          Length = 356

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 116/326 (35%), Gaps = 51/326 (15%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEE------KITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  +  +F  ++             I +  +  +S  ++ +FI   R     
Sbjct: 33  YSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDMESFILYLRERPLL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKR--------------------KITTESNIL 114
                 Q +   ++ R+LS + S  KYL +                     K   E+   
Sbjct: 93  NANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAA 152

Query: 115 NMRNLKKSNSLPR----ALN--EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
              N+K+   L       L   +++    + N  L + ++ K    R+ AI+ LL   G+
Sbjct: 153 RAENIKQKLFLGDETAGFLTYIDQEHPQQLSNRALSSFNKNK---ERDLAIIALLLASGV 209

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQL 227
           R+SEA++L  +++      + +  KG K   V +    +  +  Y  +            
Sbjct: 210 RLSEAVNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKTDT 269

Query: 228 PLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
            LF  +       ++    ++ + +        +  T H LRH+ AT L         + 
Sbjct: 270 ALFLTLYRGVPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVS 327

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWM 310
             LGH     T +YT++ +    + +
Sbjct: 328 HQLGHASTQVTDLYTHIVNDEQKNAL 353


>gi|116686981|ref|YP_840228.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
 gi|116652696|gb|ABK13335.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
          Length = 559

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 70/320 (21%), Positives = 121/320 (37%), Gaps = 34/320 (10%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +ERG +  +L S   D   +  FL   T     +   R     E R F     T  +   
Sbjct: 248 VERGKALSSLTS--EDATAYRAFLRHPTPRARWVAPARPRPSPEWRPF-----TGALSPD 300

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-----LPRALN--EKQALTLVD 139
           S+  +LS + +  ++L +++    ++   +R ++ +       + RA    E + +  + 
Sbjct: 301 SIAYTLSVLSAMFRWLIEQRYVLANSFAGLR-VRGAQRNGELDISRAFTAGEWELVRTIA 359

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDK 196
           + L  +   T     R   +L   Y  GLR SE + +T   I      +  L + GKG K
Sbjct: 360 DGLERSHGWTVPAAQRLRFVLDFGYATGLRASELVGVTLGGIETGARGERWLHLTGKGAK 419

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLF-----RGIRGKPLNPGVFQRYIR 248
              V L P    A+ +Y       +         PL       G    P    V +R+  
Sbjct: 420 AGKVVLPPLATHALDQYLVQRGLPVTSARWQPDTPLLGHLDAPGGITTPRLREVLRRFFH 479

Query: 249 QLRRY--------LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                         G     T H +RH+ ATH L+NG  L +++  L H  ++TT IY +
Sbjct: 480 AAADAIEADHPALAGKLRRATPHWMRHTHATHALANGATLTTVRDNLRHASITTTSIYLD 539

Query: 301 VNSKNGGDWMMEIYDQTHPS 320
            +       +  I+ +  P+
Sbjct: 540 DDEVQRTRQIERIFARRPPA 559


>gi|170761279|ref|YP_001786805.1| XerC/D integrase-recombinase protein [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169408268|gb|ACA56679.1| XerC/D integrase-recombinase protein [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 320

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 54/309 (17%), Positives = 123/309 (39%), Gaps = 19/309 (6%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-I 63
           NL +  +  + +  +++L       G  + T++S E        F  +   + + + + I
Sbjct: 8   NLNKTTNKTVEEIYEDYLNYCTSI-GQREKTIESKE-------KFGKYELIKVVNLDSNI 59

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           +QL+  +I   I   R +     + +  +  +++FL Y       T+  ++ + N+    
Sbjct: 60  KQLTKEKIEKHIINMRKEGYKGNTYQTYVIKMRAFLSYCFNNNYLTKF-MVKIPNILLEK 118

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
                  E++ + L+    ++T     +      AI   L   G R    L++  +++  
Sbjct: 119 K--EVYTEEEVIKLLKKPNINTCLVGDFRSW---AICSFLLSTGCRAETLLNVHVEDVNF 173

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
             +++  +    K +I   L +  K  L  Y        L  +  LF  + G+ +     
Sbjct: 174 STNSILFRHMKTKKQITVPLSNTLKVNLMEYIQRM---GLKQEDYLFPLLNGEKMKYDTC 230

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            + ++   ++  +      +T R++FAT  L NG  +  IQ  LGH  +  T+ Y N+  
Sbjct: 231 HQNLKNYFKHRNVKFHGV-NTFRNTFATMALKNGAGIYLIQKCLGHSDIKMTERYINLLP 289

Query: 304 KNGGDWMME 312
            +  + + +
Sbjct: 290 LDVKNDIQK 298


>gi|294673638|ref|YP_003574254.1| prophage PRU01 site-specific recombinase [Prevotella ruminicola 23]
 gi|294472192|gb|ADE81581.1| prophage PRU01, site-specific recombinase, phage integrase family
           [Prevotella ruminicola 23]
          Length = 381

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 57/308 (18%), Positives = 121/308 (39%), Gaps = 42/308 (13%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L +    + +    +  L++ +++    D +  L       EE   + T+  L+   +R
Sbjct: 104 DLRQSFVEFCRKHMEQENLAQNSIK----DIKVVLK----SVEESGLLNTLADLTPANVR 155

Query: 73  AFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           A+ +  R      D ++      ++ + K L +++I +     +++  K +N     L E
Sbjct: 156 AYDAWLRKPNTRTDYTINGYHKKVRKYTKILWQQEIISIDPYDHVKFPKGTNKERHPLTE 215

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSA--ILYLLYGCGLRISEALSLTPQNI-MDDQSTL 188
            + + + D          ++   ++ A  +   +   GL   +      + +        
Sbjct: 216 NEIIKIRDA---------EFYGRKDRARDLFVFMAYTGLAYCDMCLFNFKTMTELHDDYY 266

Query: 189 RIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            I G   K       P+LP     + +Y          + +LP+        ++      
Sbjct: 267 YIDGARLKTGSNFFTPILPPALAVLEKY----------DFKLPI--------ISNQKLND 308

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           Y+  ++  L +    T H  RHSFAT +L+ G  +  ++ +LGH  ++TTQIY  +  KN
Sbjct: 309 YLHLIQDTLDIRNEVTCHIGRHSFATLMLTYGIPIEKVKRMLGHKNIATTQIYAKILKKN 368

Query: 306 GGDWMMEI 313
             D + EI
Sbjct: 369 VEDSVNEI 376


>gi|319762191|ref|YP_004126128.1| integrase family protein [Alicycliphilus denitrificans BC]
 gi|317116752|gb|ADU99240.1| integrase family protein [Alicycliphilus denitrificans BC]
          Length = 414

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 50/280 (17%), Positives = 105/280 (37%), Gaps = 34/280 (12%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           + +  L+  +   + S+R    +   S+ R L+ ++S L    + ++  E  +  ++  K
Sbjct: 138 KRLDSLTAWQFDKWKSERLKSGLKPTSVNRELASLRSALTKAVEWELIPEHPLRKVKQAK 197

Query: 121 K-SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN----------------------- 156
              +   R L++ +   L + +     +        N                       
Sbjct: 198 VDEDHRVRFLSDAEETRLREVLDERDGNARAARVRHNEWRRQRGHEALPLIAEGTFIDHI 257

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEY 213
             ++ +    GLR  E   L   +I  ++  L+++    K  K R +PL       +  +
Sbjct: 258 RPMILVTINTGLRRGELFKLKRSDIDMEKRMLKVRAAAAKSGKSRFIPLNDEAATMLTRW 317

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            D  P +     +  +F G  G PL           + R + L      H +RH FA+ L
Sbjct: 318 MDQHPAE----DEELVFPGKDGAPLT--NVDSAWGSIVRAVKL-KDFHWHDMRHHFASRL 370

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +  G DL +++ +LGH  L  T  Y ++  ++    + ++
Sbjct: 371 VMAGVDLNTVRELLGHADLKMTLRYAHLAPEHKAMAVAKL 410


>gi|228997247|ref|ZP_04156871.1| Tn554-related, transposase A [Bacillus mycoides Rock3-17]
 gi|228762521|gb|EEM11444.1| Tn554-related, transposase A [Bacillus mycoides Rock3-17]
          Length = 372

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 59/348 (16%), Positives = 131/348 (37%), Gaps = 78/348 (22%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+ L+   G S+ T ++Y    +Q+ ++L        T +  +++   ++  F+   R
Sbjct: 29  KYLKYLDST-GKSRNTQKTYCYALKQYFLYLRE------TEKNYKEIKLEDLADFVGWLR 81

Query: 80  --------------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTES-------------- 111
                           K  ++++   ++ + +F  YL + +   +               
Sbjct: 82  HPYTSLNVASITPVKSKKTEKTVNLVITTVTNFYDYLYRNEEIPKDMNEKLMRQIYTGGR 141

Query: 112 ---------------NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
                          +I N+  +K+     + L ++Q               T   + R+
Sbjct: 142 TRYKGFLHHINKNKPSIRNVLKVKEPRKRIQILTKEQVRQTF----------TATTNIRD 191

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDD---QSTLRIQGKGD---------KIRIVPLLP 204
           + ++ LL+  GLRI EALSL  ++ + D      +R++ +G+           R + +  
Sbjct: 192 AFLIQLLFETGLRIGEALSLYLEDFIFDYQKGHRIRLRDRGELENGAKLKTGEREIFVSQ 251

Query: 205 SVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            +     +Y       L++        L     G+P+N        ++LR+   +     
Sbjct: 252 HLMDLYDDYLYEIIDGLDIETNFVFIKLRGRNMGRPMNYSDVGSLFKRLRKKTKID--IH 309

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGD 308
            H LRH+ AT       D++ +Q  LGH ++ TT  +Y + + ++   
Sbjct: 310 PHLLRHTHATIYYQETKDIKQVQERLGHAQIQTTMNLYLHPSDEDIRK 357


>gi|295110676|emb|CBL24629.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 400

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 47/330 (14%), Positives = 106/330 (32%), Gaps = 59/330 (17%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
             K T++       +   +     +  I    ++ +    ++ F++      +   ++  
Sbjct: 79  YKKKTVK--MTTIYKNHSYYNSRVKNSIGKMYLQDIKTYHVQKFLNDLIDSGLAHGTVSN 136

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
               +   L      +   ++  + +   K+     R L +++               T 
Sbjct: 137 IRFMLSDMLDKAVLSEYIRKNPCIGVEMPKEVKKERRVLTKEEQEKFF----------TF 186

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK-------------- 196
                +  +L      G RI E L L  ++    +  + I                    
Sbjct: 187 ASSYIHINVLKFAVTTGCRIGEVLGLKWEDCDFGKREITINKTIHYSKASSPVEGSKFFY 246

Query: 197 --------IRIVPLLPSVRKAIL---------EYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
                    R++P+   V + +          + +    +  +   Q  +F    G P+ 
Sbjct: 247 TTAKTISSNRVIPMTDEVYEILQNQKIKQTEQKMWKRSIWRQHKEFQNLVFTCSDGSPVY 306

Query: 240 PGVFQRYIRQLRRYLG-LPLST--------------TAHTLRHSFATHLLSNGGDLRSIQ 284
                  I+     +  + +                T HTLRH++AT    NG D + +Q
Sbjct: 307 YYNVNSAIKDYVAKINVIEIELAKEEKREPKIFELFTCHTLRHTYATRCYENGVDQQVVQ 366

Query: 285 SILGHFRLS-TTQIYTNVNSKNGGDWMMEI 313
            +LGH  L+ TT +YT+V+ +   + + E+
Sbjct: 367 KLLGHSTLAMTTDLYTHVSEEKKKEEVAEL 396


>gi|291300706|ref|YP_003511984.1| integrase family protein [Stackebrandtia nassauensis DSM 44728]
 gi|290569926|gb|ADD42891.1| integrase family protein [Stackebrandtia nassauensis DSM 44728]
          Length = 337

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 53/295 (17%), Positives = 101/295 (34%), Gaps = 17/295 (5%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
            S  + +       + +             Q   +L+Y +          Q      + +
Sbjct: 41  ASPASRREMAACLNRIVRLSTGDDNATAAGQPWHKLTYRDTARLKETLCQQGWSAAHVNK 100

Query: 91  SLSGIKSFLKYLKKRKITT---ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
            L  ++  L    +  +     +    ++ ++  S  LPR  +   A  ++  VL     
Sbjct: 101 HLVALRRVLTEAWRLGLMDAEQKDRACDIADV-TSVRLPRGHHV--AAEVIGAVLAACDA 157

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
           +      R++AI+ +LY  G R +E   L  ++    +  + + GKGDK R+V L     
Sbjct: 158 DEAAAGRRDAAIIAVLYSTGCRRAEIAGLRLRDYDPAERGITVIGKGDKQRLVHLNAQAV 217

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKP------LNPGVFQRYIRQLRRYLGLPLSTT 261
             +  +  +               G           ++       + +  R  G P   +
Sbjct: 218 AKVEAWLAVRGRGDGAMFSPISAAGRIRMRDGVPAGMSGQAIGHMLTRRLRQAGAPQ-AS 276

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            H LR +F   LL  G DL + Q+I+GH   +TT  Y     +       E  D+
Sbjct: 277 PHDLRRTFIGSLLDAGVDLATTQAIVGHASPATTARY----DRRPDHRRREAIDR 327


>gi|237727000|ref|ZP_04557481.1| integrase [Bacteroides sp. D4]
 gi|229433856|gb|EEO43933.1| integrase [Bacteroides dorei 5_1_36/D4]
          Length = 406

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 95/257 (36%), Gaps = 17/257 (6%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNL 119
             + L+YT +R F    R +     ++ + +  +++ +     +             + +
Sbjct: 144 DFKDLTYTFLRDFEQYLREKGNAVNTIAKHMRQLRTLVNEAINQGYMHADAYPFRKYK-I 202

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K+       L   +   L          E + +     A L+  Y  GLR S+   LTP+
Sbjct: 203 KQEKGRHEFLIPDELKKL-----ETVEVEEESMRHVLDAFLFCCY-TGLRYSDFCQLTPE 256

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           N       +RI GK   +    +   V   +  +       L    + P    +   P N
Sbjct: 257 NF------IRINGK-RWLYFKSVKTGVEIRLPLHLLFESRALGSLDRYPDIGSLAALPCN 309

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                R +R+L    G+    T H  RH+ AT L+  G  + ++Q +LGH  + TTQIY+
Sbjct: 310 SE-VNRQLRKLAGLCGIKKRITYHVSRHTCATLLIHQGVAITTVQKLLGHTSVKTTQIYS 368

Query: 300 NVNSKNGGDWMMEIYDQ 316
            + S      +     +
Sbjct: 369 EILSSTIVRDLKNAQRK 385


>gi|188994781|ref|YP_001929033.1| tyrosine type site-specific recombinase [Porphyromonas gingivalis
           ATCC 33277]
 gi|188594461|dbj|BAG33436.1| tyrosine type site-specific recombinase [Porphyromonas gingivalis
           ATCC 33277]
          Length = 420

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 58/306 (18%), Positives = 109/306 (35%), Gaps = 29/306 (9%)

Query: 16  KERQNWLQNLE---IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           + +QN++        +R  +  T  S   + ++ + FL  Y  E +    I      E +
Sbjct: 125 RLQQNFISYFREAMYKRHKNSST--SILVNWKRAMDFLKMYAGENLPFFKIDNAFAEEYK 182

Query: 73  AFISKRRTQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
            F+            I   +     S  K+ LK        T      ++ +++  S   
Sbjct: 183 RFLLTAPRGGNKCGTISHNTASTYFSIFKAALKQAFIDGYLTVDISAKIKGIQEQESRRE 242

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L  ++  TL        S        + +A+   L   GLR  +   L  + I  D   
Sbjct: 243 YLTVEELNTL-------ASTPCDREVMKRAALFSAL--TGLRHCDIQKLKWKEINMDGEQ 293

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
            R+     K + V  +P   +A+    +    +  +   LP          +P    + +
Sbjct: 294 PRLHFTQKKTKGVEYMPISEQALQLCGERGLPEQLVFEDLP----------DPSWISKPL 343

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++     G+  S + H  RHS+AT   ++  D+ ++  +LGH  + TTQIY  V  +   
Sbjct: 344 KRWIEAAGIKKSISFHCFRHSYATLQFASSTDIYTVSKMLGHTNVKTTQIYAKVVDEKKN 403

Query: 308 DWMMEI 313
                I
Sbjct: 404 KAAQAI 409


>gi|150004164|ref|YP_001298908.1| transposase [Bacteroides vulgatus ATCC 8482]
 gi|255012337|ref|ZP_05284463.1| transposase [Bacteroides sp. 2_1_7]
 gi|149932588|gb|ABR39286.1| transposase [Bacteroides vulgatus ATCC 8482]
          Length = 411

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 53/298 (17%), Positives = 114/298 (38%), Gaps = 30/298 (10%)

Query: 31  LSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSL 88
            S +T+  Y+   ++    + ++Y +E IT     +L+   IRAF    +T+  +   ++
Sbjct: 129 YSPVTINRYKNVVKKLQRLIPSYYGKEDITFH---ELTPEFIRAFDIYLKTEGGLCRNTI 185

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R +   K F      ++   ++     + +++  + P  L   +   ++         E
Sbjct: 186 VRYMKCFKKFTNMALAKEWMRKNPFYGYK-MEQDETDPVFLTYDELQAVMKKKFTIPRLE 244

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSL--------TPQNIMDDQSTLRIQGKGDKIRIV 200
                     I       GL  S+  +L           +    +  ++++ +     I 
Sbjct: 245 LV------RDIFVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRVKLEHRRKASSIS 298

Query: 201 PLLP-SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
            +    V  AILE Y   P  +     LP+    +           Y++++  + G+  +
Sbjct: 299 NIPLLPVPLAILEKYREHPICVKKGCCLPVMCNQKM--------NSYLKEIADFCGIKKN 350

Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            T H  RH+F T + L+N   L+ +  +LGH     TQ Y  V + +  + M  + ++
Sbjct: 351 LTTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNNVKER 408


>gi|67924958|ref|ZP_00518346.1| Phage integrase [Crocosphaera watsonii WH 8501]
 gi|67853195|gb|EAM48566.1| Phage integrase [Crocosphaera watsonii WH 8501]
          Length = 316

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 61/290 (21%), Positives = 119/290 (41%), Gaps = 15/290 (5%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           LS+ +  +           +     + +T+    +L Y    A  +  + ++    +  +
Sbjct: 31  LSESSQSTMLVSLNAIARLVTNGQCDAMTL-DWAKLRYPHTAAIRTALK-KRYSPTTASK 88

Query: 91  SLSGIKSFLKYLKKRKITTESN---ILNMRNLKKSNSLP-RALNEKQALTLVDNVLLHTS 146
            L G++  LK   +  + + S+    ++  ++     L  RAL+E +   L         
Sbjct: 89  MLCGLRRVLKEALRLDLMSASDYAKAVDFPSITGQRKLRGRALSESEITALFQVCR---- 144

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS 205
            +      R+ A+L +L G GLR +E ++L+  +   D   L+I+ GKGDK R V L  S
Sbjct: 145 DDPSRQGIRDLALLAILRGAGLRRAELVALSVNDFTPDGGILQIRQGKGDKERTVYLPLS 204

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRG--IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
             + +  + DL        +  P+ +G  I  + L+     + + +      +  S + H
Sbjct: 205 AVEIVNRWLDLRSRTRGA-LLCPIRKGGAICFRHLHSDAVYKILAKRAGEAAIE-SFSPH 262

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             R +F + LLSNG DL ++Q + GH     T  Y     +     +  +
Sbjct: 263 DFRRTFCSDLLSNGVDLVTVQKLAGHSSPDVTAKYDRRGEEAKQKAVQSL 312


>gi|323181030|gb|EFZ66568.1| integrase domain protein [Escherichia coli 1180]
          Length = 233

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 101/250 (40%), Gaps = 29/250 (11%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNILNMRNLKK 121
           + +L+ T +      R  Q I   ++ R +  + +    L        ++ +  ++ +K 
Sbjct: 6   VHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAMFTALISSGHFLNDNPVQGLKGMKV 65

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           +      L++ + + L+D  L     E           + +L   G R  E  +L  + +
Sbjct: 66  NEREMGYLSKSECVQLLDA-LAENPDE--------RLAVEILLSTGARWGEVAALEQRRV 116

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
           +  + T   + K  K R VP+  S+ + I                  +F       L+  
Sbjct: 117 LHCRITFS-KTKNSKNRTVPISESLFEKI-----------KKRGGKLVFPT-----LDYS 159

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + +  I+ +     +P     H LRH+FA+H + NGG++ ++Q ILGH ++ TT IY ++
Sbjct: 160 LVRDVIKTVA--PDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 217

Query: 302 NSKNGGDWMM 311
                 D + 
Sbjct: 218 APDYLQDAVR 227


>gi|229113245|ref|ZP_04242740.1| Integrase-recombinase [Bacillus cereus Rock1-15]
 gi|228670271|gb|EEL25619.1| Integrase-recombinase [Bacillus cereus Rock1-15]
          Length = 390

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 69/307 (22%), Positives = 114/307 (37%), Gaps = 34/307 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEE--------KITIQTIRQLSYTEIRAFISKRRT 80
           +   + T +SY  +   F   +  + EE        +     ++ L    IR + +  + 
Sbjct: 81  KNRKEDTKKSYVSEILSFCQCMVQHAEEFELNGEEVQQNDSLLKTLQPWHIRKYNAWLKQ 140

Query: 81  -------QKIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNLKKSNSLPRALNE 131
                        +L +    I+SFLK+L             L   N+ + +   R L+ 
Sbjct: 141 VENGRNGDTYAVATLAKKSVLIRSFLKHLHVFAYIERPLHQELQRANVNEQDRPNRDLSY 200

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRI 190
            + + ++                 N  IL  L   G RI E  +   +N   D +  LR+
Sbjct: 201 DEVMKILGFYKEQG-------HLVNYTILLALASTGARIQELCTARVKNLHYDGKYWLRV 253

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            GKGDK+R + +   + + I E      F   L+   + PLF   RG   NP      + 
Sbjct: 254 TGKGDKVRELFISEHLFQCISEMRRRRGFSTILDRGDECPLFVNQRGNFYNPKTLSNQVT 313

Query: 249 QLRRYLGLPL------STTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTNV 301
            + +   L          TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   
Sbjct: 314 DMIKKTNLDFLKYRENPVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEK 373

Query: 302 NSKNGGD 308
           + K   +
Sbjct: 374 HMKRKNN 380


>gi|160893903|ref|ZP_02074682.1| hypothetical protein CLOL250_01458 [Clostridium sp. L2-50]
 gi|156864281|gb|EDO57712.1| hypothetical protein CLOL250_01458 [Clostridium sp. L2-50]
          Length = 379

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 50/329 (15%), Positives = 129/329 (39%), Gaps = 38/329 (11%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           E ++L       +    + W+  L+ ++ +   T+++Y     ++   +    E K+   
Sbjct: 56  EHSDLENATDMLVDAWFEYWID-LK-KKTVRPNTVRNYS---ERYERNIKNVIENKL--- 107

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            + ++     +   S    +     ++ ++   + + L++ K+ ++   +     +++K 
Sbjct: 108 -LTEVKPIHCQKIFSDMADEGYKTTTIYQTRIALYNMLEFAKENEVIITNPCK--KSVKS 164

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
               P   ++K+ALT+ D      + + +  + +    L      GLR  E + L  ++I
Sbjct: 165 DIGKPS--DKKEALTIDDQRRFLAAAKGQSYEYQYRFALQ----TGLRTGELVGLKWEDI 218

Query: 182 MDDQSTLRIQGKGDK-----------------IRIVPLLPSVRKAI--LEYYDLCPFDLN 222
             ++ TL I+   +                   R +PL       +   +  +     ++
Sbjct: 219 NFERKTLTIERSMEFRYKVGEWRVGPPKSKSGYRTIPLTDEAICILKAQKEKNRKIKVID 278

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
                 +F   +G+P+    +   + ++    G+    + H LRH+FAT  +  G   ++
Sbjct: 279 KEWADTVFLCRKGQPVKNSTYDTALFKICDKAGI-KRFSMHVLRHTFATRCIEGGMMPKT 337

Query: 283 IQSILGHFRLSTTQ-IYTNVNSKNGGDWM 310
           +Q ILGH  +  T  +Y ++  +     +
Sbjct: 338 LQKILGHSNIGITMNLYVHITEEEKQKEI 366


>gi|126665397|ref|ZP_01736379.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126669107|ref|ZP_01740037.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126626434|gb|EAZ97101.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126630025|gb|EBA00641.1| integrase/recombinase [Marinobacter sp. ELB17]
          Length = 312

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 61/273 (22%), Positives = 101/273 (36%), Gaps = 20/273 (7%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
            +     +  ++  +IR F+       +     +R  + +    ++   R     S  L 
Sbjct: 33  RRAGDVPLISVTANQIRTFLDG--DTPLS-SFWQRKYTALSGLYRFALPRGYVDASP-LP 88

Query: 116 MRNLKKSNSL-PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            R  K    L P   +  +   L+D        +          ++ LLYG  LR+ EAL
Sbjct: 89  CRRPKLPPPLVPYIYSPAELKRLLDATPGACGRQVPMDAYVFRTLILLLYGACLRLGEAL 148

Query: 175 SLTPQNIMDDQSTLRIQGKGDK-IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
            LT  ++  DQ+ L IQ       R+VPL   +   + +Y              P F   
Sbjct: 149 RLTMNDVDLDQAILCIQKTKFYKTRLVPLGQDLNLVLKQYALRRNATHCKEATAPFFCFR 208

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTA------HTLRHSFATH----LLSNGGDLR-- 281
            G  L+    +   R+LR   G+  + +A      H LRH+ A H       +G DL+  
Sbjct: 209 DGHTLSQSAVRSAFRRLRSQAGVQRNDSARYQPRLHDLRHTGAVHRLVFWYRSGADLQRL 268

Query: 282 --SIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              + + LGH  LS TQ Y  +  +   +  M 
Sbjct: 269 LPQLATYLGHIDLSATQRYLTMTPELLREASMR 301


>gi|15903090|ref|NP_358640.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           R6]
 gi|116516164|ref|YP_816497.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           D39]
 gi|148989189|ref|ZP_01820579.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP6-BS73]
 gi|149013106|ref|ZP_01833952.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP19-BS75]
 gi|168577171|ref|ZP_02722986.1| tyrosine recombinase XerC [Streptococcus pneumoniae MLV-016]
 gi|182684108|ref|YP_001835855.1| tyrosine recombinase [Streptococcus pneumoniae CGSP14]
 gi|225854634|ref|YP_002736146.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           JJA]
 gi|225861099|ref|YP_002742608.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|237650105|ref|ZP_04524357.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           CCRI 1974]
 gi|237822307|ref|ZP_04598152.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           CCRI 1974M2]
 gi|298230999|ref|ZP_06964680.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           str. Canada MDR_19F]
 gi|298255433|ref|ZP_06979019.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           str. Canada MDR_19A]
 gi|298502838|ref|YP_003724778.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           TCH8431/19A]
 gi|303260566|ref|ZP_07346532.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           SP-BS293]
 gi|303262700|ref|ZP_07348639.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           SP14-BS292]
 gi|303265234|ref|ZP_07351145.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           BS397]
 gi|303266997|ref|ZP_07352871.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           BS457]
 gi|303269261|ref|ZP_07355036.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           BS458]
 gi|34222796|sp|Q7ZAK7|XERS_STRR6 RecName: Full=Tyrosine recombinase xerS
 gi|122278617|sp|Q04KF1|XERS_STRP2 RecName: Full=Tyrosine recombinase xerS
 gi|229892080|sp|B2IPW6|XERS_STRPS RecName: Full=Tyrosine recombinase xerS
 gi|254799376|sp|C1CEC5|XERS_STRZJ RecName: Full=Tyrosine recombinase xerS
 gi|254799378|sp|C1CRN6|XERS_STRZT RecName: Full=Tyrosine recombinase xerS
 gi|15458667|gb|AAK99850.1| Integrase/recombinase [Streptococcus pneumoniae R6]
 gi|116076740|gb|ABJ54460.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae D39]
 gi|147763051|gb|EDK69994.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP19-BS75]
 gi|147925412|gb|EDK76490.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP6-BS73]
 gi|182629442|gb|ACB90390.1| tyrosine recombinase [Streptococcus pneumoniae CGSP14]
 gi|183577227|gb|EDT97755.1| tyrosine recombinase XerC [Streptococcus pneumoniae MLV-016]
 gi|225722579|gb|ACO18432.1| tyrosine recombinase XerC [Streptococcus pneumoniae JJA]
 gi|225727240|gb|ACO23091.1| tyrosine recombinase XerC [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238433|gb|ADI69564.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301794260|emb|CBW36681.1| tyrosine recombinase XerC [Streptococcus pneumoniae INV104]
 gi|301801972|emb|CBW34700.1| tyrosine recombinase XerC [Streptococcus pneumoniae INV200]
 gi|302636132|gb|EFL66628.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638279|gb|EFL68748.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           SP-BS293]
 gi|302641218|gb|EFL71590.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           BS458]
 gi|302643477|gb|EFL73750.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           BS457]
 gi|302645205|gb|EFL75441.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           BS397]
 gi|332076289|gb|EGI86755.1| phage integrase family protein [Streptococcus pneumoniae GA41301]
 gi|332200478|gb|EGJ14550.1| phage integrase family protein [Streptococcus pneumoniae GA41317]
 gi|332203014|gb|EGJ17082.1| phage integrase family protein [Streptococcus pneumoniae GA47901]
          Length = 356

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 116/326 (35%), Gaps = 51/326 (15%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEE------KITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  +  +F  ++             I +  +  +S  ++ +FI   R     
Sbjct: 33  YSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDMESFILYLRERPLL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKR--------------------KITTESNIL 114
                 Q +   ++ R+LS + S  KYL +                     K   E+   
Sbjct: 93  NANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAA 152

Query: 115 NMRNLKKSNSLPR----ALN--EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
              N+K+   L       L   +++    + N  L + ++ K    R+ AI+ LL   G+
Sbjct: 153 RAENIKQKLFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNK---ERDLAIIALLLASGV 209

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQL 227
           R+SEA++L  +++      + +  KG K   V +    +  +  Y  +            
Sbjct: 210 RLSEAVNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKTDT 269

Query: 228 PLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
            LF  +       ++    ++ + +        +  T H LRH+ AT L         + 
Sbjct: 270 ALFLTLYRGVPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVS 327

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWM 310
             LGH     T +YT++ +    + +
Sbjct: 328 HQLGHASTQVTDLYTHIVNDEQKNAL 353


>gi|212695232|ref|ZP_03303360.1| hypothetical protein BACDOR_04770 [Bacteroides dorei DSM 17855]
 gi|212662142|gb|EEB22716.1| hypothetical protein BACDOR_04770 [Bacteroides dorei DSM 17855]
          Length = 411

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 55/297 (18%), Positives = 111/297 (37%), Gaps = 28/297 (9%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLK 89
            S +T+  Y+   ++  + +  Y  ++    T  +L+   IRAF    +T+  +   ++ 
Sbjct: 129 YSPVTINRYKNVVKKLQLLIPSYYGKE--DVTFHELTPEFIRAFDIYLKTEAGLCRNTIV 186

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R +   K F      ++   ++     + +++  + P  L   +  T++         E 
Sbjct: 187 RYMKCFKKFTNMALAKEWIRKNPFYGYK-MEQDETDPVFLTYDELQTVMKKKFTIPRLEL 245

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP----- 204
                    +       GL  S+  SL  +N++ D        KG               
Sbjct: 246 V------RDVFVFACFTGLAFSDVASLNKENLVQDNLGDWWIRKGRVKLEHRRKASSISN 299

Query: 205 ----SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
                V  AILE Y   P  +     LP+    +           Y++++  + G+  + 
Sbjct: 300 IPLLPVPLAILEKYKEHPTCIKKGCCLPVMCNQKM--------NSYLKEIADFCGIKKNL 351

Query: 261 TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           T H  RH+F T + L+N   L+ +  +LGH     TQ Y  V + +  + M  + ++
Sbjct: 352 TTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNNVKER 408


>gi|307704864|ref|ZP_07641756.1| tyrosine recombinase xerD [Streptococcus mitis SK597]
 gi|307621577|gb|EFO00622.1| tyrosine recombinase xerD [Streptococcus mitis SK597]
          Length = 356

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 54/323 (16%), Positives = 109/323 (33%), Gaps = 45/323 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYT------EEKITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  +  +F  ++             I +  +  +S  ++  FI   R     
Sbjct: 33  YSFTTLYEYLKEYDRFFSWVLESGISNADKMSNIPLSVLENMSKKDMETFILYLRERPLL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                 Q +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 93  NANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAA 152

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA--------RNSAILYLLYGCGLRIS 171
           +  N   +     +    +  +      +              R+ AI+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETEGFLTYIDQDYPQQLSNRALSSFNKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLF 230
           EA++L  +++      + +  KG K   V +    +  +  Y  +     N     + LF
Sbjct: 213 EAVNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYNTEKTDIALF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
             +       ++    ++ + +        +  T H LRH+ AT L         +   L
Sbjct: 273 LTLYRGVPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH     T +YT++ +    + +
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNAL 353


>gi|296393161|ref|YP_003658045.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296180308|gb|ADG97214.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 329

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 52/296 (17%), Positives = 117/296 (39%), Gaps = 34/296 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            ++W  ++ I+R   + T  S     R    F      +    Q I      +I+ +I++
Sbjct: 55  LEDWQTDMTIQRR--EETTISER--VRFVSKFHKDTGVQPAHAQVI------DIKRWIAQ 104

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    ++    + ++++ K+L+ +   ++  ++ +  ++     PR ++      L
Sbjct: 105 HPE--WSTATVATYTTHLRAWFKWLQFQDHRSDDPMVKIAAVRHPERDPRPVSSDGLARL 162

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           + +  +  +           A + L     LR++E   +  ++I+ D   L + GKG++ 
Sbjct: 163 LADCRMQPTT---------RARVLLAACQELRVAEIAKIRGEDIV-DSRFLVVNGKGNRT 212

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           + +PL P + +              +  Q   F    G  ++     + I    R     
Sbjct: 213 KTLPLHPLIAE----------LAKKMPAQGFWFPPPNGGHVDSKSVSQVISLAMRRA--K 260

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +  T H+LRH + T L   G DL  +Q ++ H   +TT+ YT +  K     ++ +
Sbjct: 261 VKGTPHSLRHWYGTELSDRGADLAVVQDLMRHKSPNTTRGYTLIADKRKRQAILSL 316


>gi|167750085|ref|ZP_02422212.1| hypothetical protein EUBSIR_01053 [Eubacterium siraeum DSM 15702]
 gi|167656958|gb|EDS01088.1| hypothetical protein EUBSIR_01053 [Eubacterium siraeum DSM 15702]
          Length = 398

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 58/325 (17%), Positives = 114/325 (35%), Gaps = 46/325 (14%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
             +IE+ + K T +SY       +       ++     T+  ++  +I  F        +
Sbjct: 87  YKKIEKNIQKSTAESYRGMINGRIRRYFTARKD----LTVGSITAKDIEDFYDWMFESHV 142

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
              ++    + + S  K   K  +   +    +   KK+       +E++ + ++  +  
Sbjct: 143 VANTVIHYHTVLHSAFKRAFKDGLIESNPFDRIDRPKKNKFTGDNYSEEELIAMLGLIRG 202

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK---------- 193
              +            + L  G GLR SEAL      +  ++ T+ +  K          
Sbjct: 203 DIIYPA----------VMLAGGLGLRRSEALGARWSRVDWEKKTILLDTKIIEYKENGKV 252

Query: 194 ----------GDKIRIVPLLPSVRKAILE-------YYDLCPFDLNLNIQLPLFRGIRGK 236
                         R +PL   V + + E       Y  +     N      +     G 
Sbjct: 253 IVEPVEEMKNKSSRRTLPLPDPVYEMLCEEREKQDLYRRMFKGSYNRKYDDYICVDQLGG 312

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            + P    +    L R  GL      H LRH+FA+ L++    L ++ + LGH  LSTT 
Sbjct: 313 LIRPNRVTQRFADLIRQYGL-RKIRFHDLRHTFASILINQDVPLLNVSTFLGHSDLSTTA 371

Query: 297 -IYTNVN---SKNGGDWMMEIYDQT 317
            IY +++    +   D +  I+++ 
Sbjct: 372 NIYAHLDKSKKQESADVISNIFNKA 396


>gi|237721640|ref|ZP_04552121.1| integrase [Bacteroides sp. 2_2_4]
 gi|229449436|gb|EEO55227.1| integrase [Bacteroides sp. 2_2_4]
          Length = 267

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 113/287 (39%), Gaps = 34/287 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            L+K T+ SY    + FL       ++ +       L+Y   + ++     +    +++ 
Sbjct: 13  NLAKNTVTSYVWTVQYFLNHYEEINKKNL-------LTY---KGYLV----ENFKPQTVN 58

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             L G+  +L++ K+ K+        ++ +K        L  +  ++  D   L T  +T
Sbjct: 59  LRLQGMNKYLEFTKQEKL-------KVKFVKVQQK--NFL--ENVISDADYKFLKTRLKT 107

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              +     I++ +   G R+SE L +  +++      L +  KG KIR + +  ++R  
Sbjct: 108 DGYNEW-YFIVWFMAATGARVSELLHIKAEHVHV--GHLDLYSKGGKIRRLYIPKNLRTE 164

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHS 268
             ++           I   +F    G+ +      + ++      G+       H+ RH 
Sbjct: 165 ATKWLKEKGL-----ISGYIFLNRFGERITTRGIAQQLKHFAEKYGMNKEVVYPHSFRHR 219

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           FA + L    DL  +  ++GH  + TT+IY    +      + ++ +
Sbjct: 220 FAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDKVVN 266


>gi|163855345|ref|YP_001629643.1| integrase/recombinase [Bordetella petrii DSM 12804]
 gi|163855611|ref|YP_001629909.1| integrase/recombinase [Bordetella petrii DSM 12804]
 gi|163855758|ref|YP_001630056.1| integrase/recombinase [Bordetella petrii DSM 12804]
 gi|163259073|emb|CAP41372.1| integrase/recombinase [Bordetella petrii]
 gi|163259339|emb|CAP41639.1| integrase/recombinase [Bordetella petrii]
 gi|163259486|emb|CAP41786.1| integrase/recombinase [Bordetella petrii]
          Length = 331

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 123/290 (42%), Gaps = 30/290 (10%)

Query: 37  QSYECD---TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
           ++Y+      R F  F   Y+ +  TI      +     A+  KR  +   + +    + 
Sbjct: 28  RAYKQQAMLLRMFDNFSKGYSIQGFTI------TEELASAWSKKRPNE--AESTRHSRVG 79

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            +  F ++L+ +  +T      +   +KS   P   +  +   + D            + 
Sbjct: 80  EMHRFARFLEGQGHSTFLVPGKI--PRKSLHHPYIFSSGEISRIFDYTSALKPSPVSRLM 137

Query: 154 ARNS-AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAIL 211
            R++  ++ +LYGCGLRISE ++L  +++  +Q  L ++ GK D  R+VP+  ++     
Sbjct: 138 HRSTPTMIKILYGCGLRISEVVALQVRDVDLEQGVLHVRHGKNDHERLVPMSSTLTDVCR 197

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-----LSTTAHTLR 266
           EY          N   P F   + +P +PG F R  RQ+   +G+P          H LR
Sbjct: 198 EY--AAQALTGANDLAPFFFNRKREPCSPGDFGRRFRQMLWEVGIPYYGKDRGPRLHDLR 255

Query: 267 HSFATHLLS----NGGDLRS----IQSILGHFRLSTTQIYTNVNSKNGGD 308
           H+F  H L+       DL +    + + LGH  L++T  Y  + ++   D
Sbjct: 256 HTFVCHRLNRWAKENADLNTLLPVLSAYLGHANLTSTYYYLRLTAEVYPD 305


>gi|150017168|ref|YP_001309422.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149903633|gb|ABR34466.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 389

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 60/335 (17%), Positives = 116/335 (34%), Gaps = 52/335 (15%)

Query: 14  LLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           L +    WL + + +   +   T + YE   R ++     Y+ +      + +L   +++
Sbjct: 66  LGELIHTWLFETIRVSDRIKPTTFEKYEGLYRNYVKDSPLYSIK------LSELKALQVQ 119

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRA 128
            + +           ++     +K F  Y       +++  L     +   KK     + 
Sbjct: 120 RYYNGLSDIGKSRNLIENLNKLLKQFFNYAVDEGYLSKNPCLGKKIVIPGEKKPRKEVQH 179

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
            ++++   LV N            D R   ++ L  G GLR  E L+LT ++I      +
Sbjct: 180 FSDEEIEILVSN----------LKDNRYRELILLSLGTGLRRGELLALTWEDIDLKNKIV 229

Query: 189 RIQ----------GKGDKIRIVPLLPSVRK-------------------AILEYYDLCPF 219
           ++           G G K R   +     +                    I +  D    
Sbjct: 230 KVNKSLAKVYIIAGDGSKERKQIIQVPKTRGSIREVSFPDNLTSIFKDIRIKQRRDRLKC 289

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
             +  +   +F    G  ++          L +   LP     H LRH+FAT L  N   
Sbjct: 290 GESYEVSDHVFTTSSGSLIDVTNLSHAWEHLLKKCKLP-HKKFHALRHTFATKLFENEVA 348

Query: 280 LRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
           L+++  +LGH  +  T   YT+V  K   D + ++
Sbjct: 349 LKTVSELLGHSSIDMTANTYTHVIPKQKSDAVEKL 383


>gi|69245847|ref|ZP_00603664.1| Phage integrase [Enterococcus faecium DO]
 gi|257882019|ref|ZP_05661672.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|258615559|ref|ZP_05713329.1| phage integrase family site specific recombinase [Enterococcus
           faecium DO]
 gi|293563473|ref|ZP_06677921.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1162]
 gi|294620814|ref|ZP_06700018.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium U0317]
 gi|314947742|ref|ZP_07851149.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0082]
 gi|68195549|gb|EAN09991.1| Phage integrase [Enterococcus faecium DO]
 gi|257817677|gb|EEV45005.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|291599599|gb|EFF30612.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium U0317]
 gi|291604475|gb|EFF33961.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1162]
 gi|313645722|gb|EFS10302.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0082]
          Length = 380

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 47/307 (15%), Positives = 102/307 (33%), Gaps = 48/307 (15%)

Query: 36  LQSYECDTR-----QFLIFLAFYTEEKITIQTIRQLSYT----EIRAFISKRRTQKIGDR 86
           + +Y    +         F   +         + ++S +    ++  +    +      +
Sbjct: 77  IDNYRTRVKPSSVAVAQRFCKNHILPAFGELRLDKISVSYCQKQVNEWHKTLKQYGFLRK 136

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV--DNVLLH 144
           +            K+    ++  ++ +           LPR + E+Q L     D + L 
Sbjct: 137 TTA-------QIFKFGVAMEVCKDNPMSK-------TLLPRKIEEEQPLKFYTKDQLQLF 182

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM----------------DDQSTL 188
             +  +    +      LL   G+R SEAL+L  ++I                  +Q  L
Sbjct: 183 LQNTKENNSVKLYTFFRLLAYTGMRKSEALALQWEDIDYFNKTITIGKTIAQDEFNQVVL 242

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL------NLNIQLPLFRGIRGKPLNPGV 242
           ++    +  R + L     K +  +       +        + +  LF     K   P V
Sbjct: 243 QVPKTKNSSRTIQLDDFTLKQLRIWQQEQMKIMILYGYNTNSPKQFLFTTNTNKLYYPQV 302

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNV 301
              ++  + +   +    T H  RH+  + L  +G  ++ +Q  LGH  + TT  IY +V
Sbjct: 303 VNDWLDWIYKKTPMEPQITPHGFRHTHCSLLFESGASIKEVQERLGHKDIKTTMNIYAHV 362

Query: 302 NSKNGGD 308
             ++   
Sbjct: 363 TPQSVKK 369


>gi|210612360|ref|ZP_03289285.1| hypothetical protein CLONEX_01486 [Clostridium nexile DSM 1787]
 gi|210151620|gb|EEA82627.1| hypothetical protein CLONEX_01486 [Clostridium nexile DSM 1787]
          Length = 420

 Score =  115 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 59/365 (16%), Positives = 137/365 (37%), Gaps = 61/365 (16%)

Query: 2   EGNNLPEIVSFEL-LKERQNWLQNLE--------------IERGLS------KLTLQSYE 40
           E + +PE    +L L+E++  +Q+L+              +ER LS        TL +Y+
Sbjct: 46  EADKMPEGKRADLSLREKERKVQSLQMQGITGSNITVLELVERYLSLKTGVKHNTLANYK 105

Query: 41  CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLK 100
                    +    +E+   + +  +  ++ + F+ K +    G  S+      ++   +
Sbjct: 106 -------FVVNVLKKEEFAYKKVDDVKLSDAKIFLIKLQRDGRGYSSIHSIRGVLRPAFQ 158

Query: 101 YLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
                 +  ++        +    L     ++QA++  D        +      +     
Sbjct: 159 MAVDDDLILKNPF----GFELGTVLVNDSQKRQAVSPEDETKFLDFVKNDPHYNQYYDAF 214

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL----------------- 203
           Y+L+  GLRISE   LT +++   +  + +  +  + R +  +                 
Sbjct: 215 YILFKTGLRISEFCGLTVKDLDFKEDIINVNHQLQRTREMKYIIVSTKTTSGTRLLPMEA 274

Query: 204 ---PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP--- 257
               +  + +          +       LF    G+P+    +++Y++  R         
Sbjct: 275 DVKEAFLRILKNRRKPKREPMVDGYGGFLFLDKNGRPMVALHWEKYMQHAREKYNRENLL 334

Query: 258 --LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV---NSKNGGDWMM 311
                T H  RH++ T++ ++G +L+++Q ++GH  +S T  IYT+    ++K     + 
Sbjct: 335 QLPPVTPHICRHTYCTNMANSGMNLKTLQYLMGHSDVSVTLNIYTHTGYDDAKKELARLK 394

Query: 312 EIYDQ 316
           E  D+
Sbjct: 395 EARDE 399


>gi|45358306|ref|NP_987863.1| integrase/recombinase [Methanococcus maripaludis S2]
 gi|44921064|emb|CAF30299.1| Probable integrase/recombinase [Methanococcus maripaludis S2]
          Length = 324

 Score =  115 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 66/311 (21%), Positives = 132/311 (42%), Gaps = 24/311 (7%)

Query: 16  KERQNWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +E+  +++  + ER    +   T+++   D     +FLAF  E      ++    +    
Sbjct: 21  EEQNIYIKKFQEEREFDNIKPSTIKN---DVTSLKVFLAFCEEIGKEPYSLTTHDFVIFF 77

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLK---YLKKRKITTESNILNMRNLKKSNSLPRAL 129
             ++ RR   +  R+  R  + +K F +   Y+  ++   ES I   R  K        +
Sbjct: 78  NMLNNRRNCTV--RTQNRYFNLLKVFYRLLKYVNFKEFERES-IERKRFSKFEKKHYDTI 134

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           N      ++  ++L  S        R++ I+ +L+  G R SEALS+  ++   ++   R
Sbjct: 135 NFDTYNRIIKEIILSNSRTR----LRDALIVRVLWETGCRRSEALSIRYKDCDFEKGRFR 190

Query: 190 IQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLN--PGVFQ 244
           I+  K  + R V +     + + +Y        + +   Q  + +  +   L+    VF+
Sbjct: 191 IRDTKTYEERTVVIAEETVEIVRDYIKENIKRDSNDYIFQNEMIQNGKRVKLDWITNVFK 250

Query: 245 RYIRQLRRYLGLP--LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           + +R+L+    +P       H+LRH  AT LL  G  +  ++ ILGH  L TT  Y++ +
Sbjct: 251 KAVRKLKEEGVIPEGKRIVIHSLRHGRATDLLDKGVPIDVVKEILGHRSLETTLYYSH-S 309

Query: 303 SKNGGDWMMEI 313
            +     +  I
Sbjct: 310 KERKNGMLDNI 320


>gi|322385519|ref|ZP_08059163.1| phage integrase family integrase/recombinase [Streptococcus
           cristatus ATCC 51100]
 gi|321270257|gb|EFX53173.1| phage integrase family integrase/recombinase [Streptococcus
           cristatus ATCC 51100]
          Length = 357

 Score =  115 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 52/326 (15%), Positives = 111/326 (34%), Gaps = 45/326 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  +  +F  ++            +I +  +  ++  ++ +FI   R +   
Sbjct: 34  YSFTTLYEYLKEYDRFFRWVLDSDISDASEIAEIPLSVLENMTKKDMESFILYLRERPLL 93

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                   +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 94  NANTTQNGVSQTAINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATKKKKETLAA 153

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA--------RNSAILYLLYGCGLRIS 171
           +  N   +     +    +  +      +              R+ AI+ LL   G+R+S
Sbjct: 154 RAENIKQKLFLGDETEEFLQYIDTEYPKKLSNRALSSFNKNKERDLAIIALLLASGVRLS 213

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLF 230
           EA++L  ++I      + +  KG K   V +    +  + EY ++              F
Sbjct: 214 EAVNLDLKDINLKMMVIEVTRKGGKRDSVNVAAFAKPYLEEYLNIRSKRYKAEKTDTAFF 273

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +        +  T H LRH+ AT L         +   L
Sbjct: 274 LTEYRGTPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQL 331

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH     T +YT++ +    + + ++
Sbjct: 332 GHASTQVTDLYTHIVNDEQKNALDKL 357


>gi|298377186|ref|ZP_06987140.1| transposase [Bacteroides sp. 3_1_19]
 gi|298266170|gb|EFI07829.1| transposase [Bacteroides sp. 3_1_19]
          Length = 412

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 53/298 (17%), Positives = 114/298 (38%), Gaps = 30/298 (10%)

Query: 31  LSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSL 88
            S +T+  Y+   ++    + ++Y +E IT     +L+   IRAF    +T+  +   ++
Sbjct: 130 YSPVTINRYKNVVKKLQQLIPSYYGKEDITFH---ELTPEFIRAFDIYLKTEGGLCRNTI 186

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R +   K F      ++   ++     + +++  + P  L   +   ++         E
Sbjct: 187 VRYMKCFKKFTNMALAKEWMRKNPFYGYK-MEQDETDPVFLTYDELQAVMKKKFTIPRLE 245

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSL--------TPQNIMDDQSTLRIQGKGDKIRIV 200
                     I       GL  S+  +L           +    +  ++++ +     I 
Sbjct: 246 LV------RDIFVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRVKLEHRRKASSIS 299

Query: 201 PLLP-SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
            +    V  AILE Y   P  +     LP+    +           Y++++  + G+  +
Sbjct: 300 NIPLLPVPLAILEKYREHPICVKKGCCLPVMCNQKM--------NSYLKEIADFCGIKKN 351

Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            T H  RH+F T + L+N   L+ +  +LGH     TQ Y  V + +  + M  + ++
Sbjct: 352 LTTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNNVKER 409


>gi|288958732|ref|YP_003449073.1| integrase [Azospirillum sp. B510]
 gi|288911040|dbj|BAI72529.1| integrase [Azospirillum sp. B510]
          Length = 301

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 47/307 (15%), Positives = 110/307 (35%), Gaps = 45/307 (14%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           +++++   +   +  A   + K     +  ++  ++  + ++R    +   S+ R L  +
Sbjct: 6   IRTHKTTVQSLKVCFADLVDRK-----LDDVTPLDVERWRTQRLNDGLKPSSVNRQLDDL 60

Query: 96  KSFLKYLKKRKITT--ESNILNMRNLKK-SNSLPRALNEKQALTL---VDNVLLHTSHET 149
           KS     K         S I  ++ +K  SN   R L++++  +L   +D          
Sbjct: 61  KS--AMTKAETWIKGFSSPIAGVKRVKVDSNRRVRFLSDEEETSLRRALDEREERLRQGR 118

Query: 150 KWIDARNSA--------------------ILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              +                         ++ L    G+R  E  +L   ++   +  + 
Sbjct: 119 DNANVWRRERDYELLPDLRLLAYADHLKPLVLLSLNTGMRQGEVFALRWSDVDPQRREVT 178

Query: 190 IQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           + G   K  + R +P+     K +  +               +F G  G  +N    +  
Sbjct: 179 VAGTTAKSGQTRHIPMNDEAHKVLSRWRTQ------SGGTGLVFPGRDGSKMN--NVRTS 230

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
              +     +      H LRH+FA+ L+  G DL +++ +LGH  +  T  Y ++  ++ 
Sbjct: 231 WEGVLETAEIS-DFRWHDLRHTFASKLVMAGVDLNTVRELLGHSDIKMTLRYAHLAPEHK 289

Query: 307 GDWMMEI 313
              + ++
Sbjct: 290 AAAVAKL 296


>gi|212694179|ref|ZP_03302307.1| hypothetical protein BACDOR_03705 [Bacteroides dorei DSM 17855]
 gi|224026237|ref|ZP_03644603.1| hypothetical protein BACCOPRO_02993 [Bacteroides coprophilus DSM
           18228]
 gi|253572729|ref|ZP_04850129.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|254882550|ref|ZP_05255260.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|317480879|ref|ZP_07939960.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|329965174|ref|ZP_08302105.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|212663245|gb|EEB23819.1| hypothetical protein BACDOR_03705 [Bacteroides dorei DSM 17855]
 gi|224019473|gb|EEF77471.1| hypothetical protein BACCOPRO_02993 [Bacteroides coprophilus DSM
           18228]
 gi|251837629|gb|EES65720.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|254835343|gb|EET15652.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|316902964|gb|EFV24837.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|328523537|gb|EGF50634.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 415

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 56/297 (18%), Positives = 109/297 (36%), Gaps = 29/297 (9%)

Query: 20  NWLQNLEIER--GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++ L  ER    S+  + ++       L   A     + +   ++ +     R+F+ K
Sbjct: 131 EYIEKLIKEREETASESIVVNWRR-LHTLLSMFAKCDYIQFSQIDMKYIEA--FRSFLIK 187

Query: 78  RRTQKIGDRSLKR-----SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
                    ++ R       S  K+ LK                +N+   ++    L+ +
Sbjct: 188 APQGGSKKGTISRNTASTYFSIFKAALKQAFVDGYLNCDIAAKAKNIMFQSARREYLSLE 247

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L          +T   D    A L+     G+R S+   L    + +     R+  
Sbjct: 248 ELNIL---------AKTPCDDILKRAALFSAL-TGMRHSDIQKLKWSEVEEYNGGYRLNF 297

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
              K + V  +P   +A          +   + +L +F G+     +P    R + +  +
Sbjct: 298 TQQKTKGVEYMPISPQA-----YKLCGERKKDGELLVFAGLP----DPSWISRPLERWVK 348

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             G+    T H  RH++AT  L+NG D+ ++  +LGH  + TTQIY  V  K   + 
Sbjct: 349 ASGITKHITFHCFRHTYATLQLANGTDIYTVSKMLGHTNVKTTQIYAKVIDKKKDEA 405


>gi|295841257|dbj|BAJ07030.1| integrase [uncultured bacterium]
 gi|295841283|dbj|BAJ07049.1| integrase [uncultured bacterium]
          Length = 285

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 59/284 (20%), Positives = 103/284 (36%), Gaps = 60/284 (21%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           R  S  T ++Y    R+F+ F              R++   EI AF+S       +   +
Sbjct: 24  RHYSIRTEEAYVHWIRRFIRFSGGRHP--------REMGQPEIEAFLSHLAVDGNVAAAT 75

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++L+ I    K +  R++     +  +   KK   LP  L   + + L+         
Sbjct: 76  QNQALNAISFLYKRVLDRELGD---LGAIVRAKKPRKLPVVLTRSEVMALL--------- 123

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
               +D  +     L+YG GLR+ E + L  +++  ++  L ++ GKG + RI  L   +
Sbjct: 124 --SRLDGVSRLASGLMYGAGLRLMETVRLRAKDLDLERGELVVRNGKGGRDRITVLPARL 181

Query: 207 RKAI------------------------------------LEYYDLCPFDLNLNIQLPLF 230
              +                                     E+     F      + P  
Sbjct: 182 ANPLRDQLAHARALHLSDLAEGFGAVFMPDALARKYRGADREWSWQYVFPAAARSRDPRS 241

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
             +R         QR +++  R  GL    ++H+LRHSFATHLL
Sbjct: 242 GAMRRHHFGEAAVQRAVKRAARETGLVKRASSHSLRHSFATHLL 285


>gi|15616113|ref|NP_244418.1| integrase (phage-related protein) [Bacillus halodurans C-125]
 gi|10176175|dbj|BAB07270.1| integrase (phage-related protein) [Bacillus halodurans C-125]
          Length = 378

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 49/295 (16%), Positives = 104/295 (35%), Gaps = 33/295 (11%)

Query: 41  CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLK 100
            D R+ + F+  Y  +      ++ L+    +  +++   +     S+K+  + +++ LK
Sbjct: 84  NDIRRAVEFVEKYLPD----VKLKDLTREMYQKALNE-YGETHSTASVKKHHTYMRACLK 138

Query: 101 YLKKRKITTESNILNMRNLKKSNSL---PRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
                 I  +    N+  + K        + LN ++A  L+     +           + 
Sbjct: 139 EALADGIIYKDPTFNVVAVGKVEPKNEEIKYLNYEEAAKLLRVTFGNLQQR-----YISR 193

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP------------- 204
            I+      G R SE + LT   +  +  T+ I    D                      
Sbjct: 194 YIILFALATGARFSEIIGLTWDCVDFENKTVTINKTWDHKYKKWFDNTKNYASKRTITVD 253

Query: 205 ----SVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
               S+ K +            L  +  L F   + + +      + +R L +   +   
Sbjct: 254 DHTLSILKDLKRKQAQLAIKTGLRNEHNLVFINSKFELVTNNAVNKTLRLLCKKANI-KE 312

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
            T H LRH+ A+ LL  G +++ +   LGH  + TT Q Y+++  +       ++
Sbjct: 313 ITCHGLRHTHASMLLFKGVNIKYVSRRLGHKDIVTTLQTYSHIMDEMEQKESRQV 367


>gi|165976842|ref|YP_001652435.1| integrase [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|165876943|gb|ABY69991.1| integrase [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
          Length = 266

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 51/297 (17%), Positives = 113/297 (38%), Gaps = 35/297 (11%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++ + L  +  L+K T+ +Y    +QF                   ++ + ++ +     
Sbjct: 4   SFQKYLSNQ-NLAKNTVSAYLFAVKQFYKLFP-------------DITKSHLKEYKVFLI 49

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +    +++   L  I  +L++LKK K       L    +++   L   ++E        
Sbjct: 50  -EHYKPQTVNLRLRAINCYLEFLKKEKWK-----LTFVKVQQKPFLENVISEADYHYF-- 101

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              L   +E  W       ++  +   G R+SE + +  ++I      L +  KG K++ 
Sbjct: 102 KQRLKEDNELYW-----YFVIRFMAATGARVSELIQIKVEHINI--GYLDLYSKGGKLKR 154

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PL 258
           + +  ++++   E+      D    +   +F    G+ +        ++ L +   L P 
Sbjct: 155 IYIPLALQQESREWL-----DKTNKLSGFIFLNKYGERITTRGIASQLKILAKRYKLEPK 209

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
               H+ RH FA   L    D+  +  ++GH  + TT+IY    +      + +I D
Sbjct: 210 VVYPHSFRHRFAKSFLERFNDIAFLADLMGHESIETTRIYLRKTATEQQAIINKIID 266


>gi|9187580|emb|CAB96970.1| hypothetical protein [Pseudomonas syringae pv. pisi]
          Length = 336

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 55/321 (17%), Positives = 117/321 (36%), Gaps = 44/321 (13%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           + Q WL  L    G +  TL++Y      +L+       E         +++ ++  +I 
Sbjct: 16  DVQEWLA-LLGNLGRASATLEAYGRGLAHYLLHCEASGLEA------ESITFEQVTLYIR 68

Query: 77  KRR---TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN--------------- 118
           + +      + + +L + L+ I+ +  +L  +    ++ +   ++               
Sbjct: 69  RLQPGQENAVANSTLHQRLTAIRLWYDHLVFQGRCAQNPVPRGQHGRLCQVPGHSGFVRG 128

Query: 119 -LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
            + +   LP    ++Q    +      +         R+  +L L Y   LR +E ++L 
Sbjct: 129 LVPRLIKLPDIPTDEQWRYFLSIAARSS--------IRDRLMLSLAYCGALRRAELVALR 180

Query: 178 PQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-- 232
            +++      + ++    KG + R+V   P +   +  +       L    +  LFR   
Sbjct: 181 IEDLDLAHRLISVRAETTKGRRSRVVCYSPDIAPILGTHLHA--LRLAGWSKGALFRSES 238

Query: 233 --IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
              RG  L    + + + +      L    + HT RH   THL   G  L  + +  GH 
Sbjct: 239 DRNRGSALTRWTWSKTVERWAADSNLSC-LSTHTFRHLRLTHLARAGWKLHELTAYAGHR 297

Query: 291 RLSTTQIYTNVNSKNGGDWMM 311
              TT IY +++  +    M 
Sbjct: 298 DPKTTLIYVHLSGADLTAKMA 318


>gi|149924447|ref|ZP_01912810.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149814686|gb|EDM74262.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 377

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 53/276 (19%), Positives = 106/276 (38%), Gaps = 26/276 (9%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           L  +    +  + +  +    I AF   +   ++  +++   L  +   L+  K+ K+ +
Sbjct: 103 LRTHLLPALGRRRLDAIDERVIDAFKVSQSQLELAPKTVNDHLKLLGRMLRVAKRWKLIS 162

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
           E     +   K +      L+ K+A   ++    +  +   W      A+       GLR
Sbjct: 163 EVP--EIVLPKLAAPSFDFLDFKEAKLFLEGAWAYELYGGMWPIYMVVAM-----RTGLR 215

Query: 170 ISEALSLTP-QNIMDDQSTLRIQG-----------KGDKIRIVPLLPSVRKAILEYYDLC 217
           + E  SL   +++  D+  +R+Q            K  K R VPL     +A+  +    
Sbjct: 216 LGEMKSLRWREDLDLDRGRVRVQRSHSDKHGFASPKNGKSRDVPLTLDALEALRSWRGQA 275

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
             +L  +          G+PL        ++ + + +GL      H LRH+FA+H +  G
Sbjct: 276 RGELVFSQLS------SGEPLRHRQPNNAVKAIAKSVGL-RQIHTHVLRHTFASHAVMRG 328

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +R +Q  LGH  +  T  Y ++    G   +  +
Sbjct: 329 IPMRQVQEWLGHSSIVVTMRYAHLADGMGDAMIQRL 364


>gi|83590631|ref|YP_430640.1| Phage integrase [Moorella thermoacetica ATCC 39073]
 gi|83573545|gb|ABC20097.1| Phage integrase [Moorella thermoacetica ATCC 39073]
          Length = 390

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 58/319 (18%), Positives = 109/319 (34%), Gaps = 39/319 (12%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            L + T +SYE   R        +    +    +++L   +I+   + +    +    ++
Sbjct: 86  HLRQSTWESYETVLR-------LHVIPTLGSIPLKKLQPADIQRLYASKLESGLSPTRVR 138

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
                +   +   ++  +  ++     +  +      + LN +Q    ++       +  
Sbjct: 139 YIHVVLHEAMSQARESGLLLQNPTEAAKPPRHPKKKVQPLNPEQVKRFLETAKQDPLYPA 198

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---------------GKG 194
                       L  G GLR  E L L  Q++   +  L+++                  
Sbjct: 199 ----------FLLALGTGLRRGEILGLRWQDLDLQKGILQVRQSLIRTREGLKFEEPKTE 248

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDL-----NLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
              R +PL PSV  A+  +      +      +      +F    G+P +P  F  Y  +
Sbjct: 249 KSRRQIPLPPSVVAALKRHKAWVNQNKLILGPDYEDHDLVFPVENGRPRDPKGFAEYFNR 308

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
           L    GLP     H LRH+ AT LL  G   + +Q  LGH  +S T  IY+++       
Sbjct: 309 LLDKAGLP-HIRLHDLRHTHATLLLLEGVHPKVVQERLGHSTVSITLDIYSHILPGLQEK 367

Query: 309 WMMEIYDQTHPSITQKDKK 327
               I     P      K+
Sbjct: 368 AAERIDGLLQPKENPSPKE 386


>gi|258647236|ref|ZP_05734705.1| integrase [Prevotella tannerae ATCC 51259]
 gi|260852992|gb|EEX72861.1| integrase [Prevotella tannerae ATCC 51259]
          Length = 409

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 63/289 (21%), Positives = 116/289 (40%), Gaps = 25/289 (8%)

Query: 30  GLSKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
             +K T  +Y    R    F+   +  + I    + +    + ++FI     + +   + 
Sbjct: 128 NRAKGTYPAYIYTRRTLAEFIEKEFRTKDIVFGQMTEQFIHDYQSFI--LDDKGLAIETC 185

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           +  L+ +K   +   K          +    K+  + P+AL+ +    + D  L+   H 
Sbjct: 186 RHYLAIVKKVCRRAYKEGYADRCFFAHFSLPKQKENTPKALSRESFEKIRD--LVIPEHR 243

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRIQGKGDKIR-IVPLLP 204
           T  I AR+  +       G   ++A+S+T  N     +    L+ + K +++R  V LLP
Sbjct: 244 TSHILARD--LFLFACYTGTSYADAVSVTRNNLFTNDEGSLWLKYRRKKNELRACVKLLP 301

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
                I +Y D        + +  LF  +    L     +R ++ L     +    T H 
Sbjct: 302 EALTLIEKYRD--------DERPTLFPMLYHPNL-----RRLMKSLAVLADIKEDLTYHA 348

Query: 265 LRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            RHSFA+ + L  G  + +I  +LGH  L TTQ+Y  V  K   + M +
Sbjct: 349 GRHSFASLITLEVGVPIETICKMLGHSNLQTTQVYAKVTPKKLFEDMDK 397


>gi|319902468|ref|YP_004162196.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319417499|gb|ADV44610.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 410

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 52/290 (17%), Positives = 116/290 (40%), Gaps = 26/290 (8%)

Query: 27  IERGLSKLTLQSY-ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           I+R  S  +   Y  C   +F+   + Y  + +    + +    + ++F++    +    
Sbjct: 127 IDRAKSSYSTYHYMRCTLAEFIG--SRYKTKDLAFGQVDETFIHDYQSFVTG--EKGYAI 182

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            +++  L+ +K   +   K     + +  +    K+++  PRAL+ +    + D  +   
Sbjct: 183 DTVRHYLAILKKVCRKAFKDGYADKFHFQHFTLPKQTDKTPRALSRESFEKVRDVEI--- 239

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS----TLRIQGKGDKIRIVP 201
             E +        +       G+   + +++T ++ +         L+ + K +++R   
Sbjct: 240 -PEYRKSHRLARDLFLFACYTGVSYIDIVTITAKDNLFTDEDGALWLKYRRKKNELRASV 298

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            L     A++E Y     D        LF  +    L     +R+++ L     +     
Sbjct: 299 KLLPEAIALIEKYRDENRDT-------LFPMMHHPNL-----KRHMKALAALAEIKDDLC 346

Query: 262 AHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            H  RHSFA+ + L  G  + +I  +LGH  ++TTQ+Y  V+ K   + M
Sbjct: 347 YHQARHSFASLITLEAGVPIETISRMLGHSNITTTQVYARVSPKKLFEDM 396


>gi|332360444|gb|EGJ38255.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK355]
          Length = 360

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 55/324 (16%), Positives = 109/324 (33%), Gaps = 46/324 (14%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  +  +F  ++            +I +  +  ++  ++ AFI   R +   
Sbjct: 34  YSFTTLYEYLKEYDRFFNWVLESGITDASHIAEIPLSVLENMTKKDMEAFILYLRERPLL 93

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                   +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 94  NANTTQNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATKKKKETLAA 153

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA--------RNSAILYLLYGCGLRIS 171
           +  N   +     +    +  +      +              R+ AI+ LL   G+R+S
Sbjct: 154 RAENIKQKLFLGDETEEFLQYIDTEYPKKLSNRALSSFNKNKERDLAIIALLLASGVRLS 213

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLF 230
           EA++L  ++I      + +  KG K   V +    +  + +Y  +              F
Sbjct: 214 EAVNLDLKDINLKMMVIEVTRKGGKRDSVNVAAFAKPYLEDYLSIRSKRYKAEKTDTAFF 273

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +        +  T H LRH+ AT L         +   L
Sbjct: 274 LTEYRGTPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQL 331

Query: 288 GHFRLSTTQIYTN-VNSKNGGDWM 310
           GH     T +YT+ VN +    W+
Sbjct: 332 GHASTQVTDLYTHIVNDEQKMLWI 355


>gi|323486154|ref|ZP_08091484.1| phage integrase family Integrase/recombinase [Clostridium symbiosum
           WAL-14163]
 gi|323400537|gb|EGA92905.1| phage integrase family Integrase/recombinase [Clostridium symbiosum
           WAL-14163]
          Length = 299

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 66/306 (21%), Positives = 114/306 (37%), Gaps = 34/306 (11%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-----LSYTE 70
           +  Q + + L  E   +K T+  Y  D R F  F+      +    +        ++  +
Sbjct: 12  EALQRYKEYLIKEER-AKATVDKYLHDVRVFEAFVRREQSCEADWNSAADTSRKAVTKEK 70

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL----P 126
           +  F     T     RS+   L+ + SF  ++             ++ +K    +     
Sbjct: 71  VIEFKHNLLTI-YHVRSVNSMLAALNSFFSFMDWTDF-------RVKPVKIQRQMFCEEQ 122

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R LN+K+   LV         +          IL  L G GLRISE  S+T +++   + 
Sbjct: 123 RELNKKEYYRLVRAAQNMGKRQLS-------LILQTLCGLGLRISELKSVTVESVRKGKL 175

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            +  +GK    RIV +   ++K +L Y               +F    GK ++     R 
Sbjct: 176 CIYNKGKN---RIVFIGSKLQKQLLLYIRERKLKTGE-----VFITKTGKGVDRSNVWRE 227

Query: 247 IRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +++L     +       H LRH FA        D+  +  I+GH  + TT+IYT  + K 
Sbjct: 228 MKKLCGEADVEWQKIFPHNLRHLFARTFYELKKDVVKLADIMGHSSIETTRIYTATSGKE 287

Query: 306 GGDWMM 311
               M 
Sbjct: 288 YRRQME 293


>gi|261879822|ref|ZP_06006249.1| integrase [Prevotella bergensis DSM 17361]
 gi|270333480|gb|EFA44266.1| integrase [Prevotella bergensis DSM 17361]
          Length = 407

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 69/290 (23%), Positives = 112/290 (38%), Gaps = 24/290 (8%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLK 89
            S  TLQ Y    R F  FL      K +   + +L+YT IR F    RT       +  
Sbjct: 128 ASSATLQKYNVCERHFREFLQRNY--KRSDIKLSELTYTVIREFDIYLRTVVGQNPNTAT 185

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           +++   K+     +K  +      LN R   +  +    L +++ + + +  +     E 
Sbjct: 186 KTMKTFKTITILGQKMGVLYHDPFLNHRFHLEPVNR-GFLTDEEIMKIANKEISIQRLEL 244

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSV 206
                R+  I       GL   +  +LTP NI    D Q  +  + K      V LL   
Sbjct: 245 ----VRDVFIFSCF--TGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIP 298

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           +  I +Y      D           G     L       Y++++    G+  + T H  R
Sbjct: 299 KNIIAKYSHKTYRD-----------GKLFPILTNQKTNAYLKEIADLCGIKKNLTFHLAR 347

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           H+FAT  LS G  + S+  +LGH  + TTQIY  + +K     M ++ D+
Sbjct: 348 HTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKVEHDMEQLADK 397


>gi|227497529|ref|ZP_03927757.1| site-specific tyrosine recombinase XerC [Actinomyces urogenitalis
           DSM 15434]
 gi|226833010|gb|EEH65393.1| site-specific tyrosine recombinase XerC [Actinomyces urogenitalis
           DSM 15434]
          Length = 149

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 1/124 (0%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRAFIS 76
           RQ+W + L ++RG S+ T+++Y  D    L FL     E   +   +  L   ++RA+++
Sbjct: 13  RQSWERYLRLQRGRSEHTVRAYIGDLDDLLTFLGVGPGEDEGVGPALSSLDLADLRAWLA 72

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                     +L R  S ++SF  +  ++ +        +R  +  N LP  L+++QA  
Sbjct: 73  DLSASGHARATLARRGSALRSFSTWAWRQGLLASDVAARLRTPRADNRLPTVLSQEQATA 132

Query: 137 LVDN 140
           L+D 
Sbjct: 133 LLDA 136


>gi|46580167|ref|YP_010975.1| phage integrase family site specific recombinase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46449584|gb|AAS96234.1| site-specific recombinase, phage integrase family [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311233841|gb|ADP86695.1| integrase family protein [Desulfovibrio vulgaris RCH1]
          Length = 373

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 44/271 (16%), Positives = 92/271 (33%), Gaps = 17/271 (6%)

Query: 45  QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK 104
               +   +         + ++    I         +    ++++ +++ ++   +    
Sbjct: 102 HMRGYFEHHIAPLFGDAKMDRIKPIHIEELKRSMAEKGRSPQTIRHAIALVRQVYRKCVA 161

Query: 105 RKITT-ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
             I T  S    +   K   +  R L E +A +L+  +   +          + A L L 
Sbjct: 162 WGIYTGTSPTDGVEMPKVDAARLRFLTEAEAASLLHALHRRSRQ------WHDIAYLSL- 214

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
              G+R+ E L L   ++      + +       R   +   V++ +           + 
Sbjct: 215 -YTGMRLGEVLGLQVGHVNVADGVIDVMDAKAGTRAAYMTAGVKEILA----ARCAGRDA 269

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL---STTAHTLRHSFATHLLSNGGDL 280
              + + RG         VF R   +L    G+         HTLRH+F + L   G  L
Sbjct: 270 KEFVFVQRGGGRVRYISSVFSRVADELFND-GVTDARHKVVFHTLRHTFGSWLAQRGVPL 328

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            +I  ++GH  L  T+ Y+ ++     D M 
Sbjct: 329 YTIAVLMGHSSLEMTKRYSKLSPDTKHDAMA 359


>gi|29349929|ref|NP_813432.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341840|gb|AAO79626.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 267

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 112/287 (39%), Gaps = 34/287 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            L+K T+ SY    + FL       ++ +       L+Y   + ++     +    +++ 
Sbjct: 13  NLAKNTVTSYVWTVQYFLNHYGEVNKKNL-------LTY---KGYLV----ENFKPQTVN 58

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             L GI  +L++ K+ K+        ++ +K        L  +  ++  D   L T  + 
Sbjct: 59  LRLQGINKYLEFTKQEKL-------KVKFVKVQQK--NFL--ENVISDADYKFLKTRLKA 107

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              +     I++ +   G R+SE L +  +++      L +  KG KIR + +  ++R  
Sbjct: 108 DGYNEW-YFIVWFMAATGARVSELLHIKAEHVQV--GHLDLYSKGGKIRRLYIPKNLRTE 164

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHS 268
             ++           I   +F    G+ +      + ++      G+       H+ RH 
Sbjct: 165 ATKWLKEKSL-----ISGYIFLNRFGERITTRGIAQQLKHFAGKYGMNKEVVYPHSFRHR 219

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           FA + L    DL  +  ++GH  + TT+IY    +      + ++ +
Sbjct: 220 FAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDKVVN 266


>gi|256544839|ref|ZP_05472211.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
 gi|256399728|gb|EEU13333.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
          Length = 411

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 58/336 (17%), Positives = 121/336 (36%), Gaps = 62/336 (18%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIG 84
           +++RGL   T ++Y    +QF+       E       +  +  +++R+F ++ +  Q + 
Sbjct: 80  KVKRGLKDNTFKNYIYMYKQFV-------EPTFGRIKLSDIKRSDVRSFYNRLKEDQGLM 132

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNS----LPRALNEKQALTLVD 139
             ++    + +   L+     +    +   N ++ LK +        +A+  ++   L +
Sbjct: 133 VSTIDCVHTVLHQVLELAVDDEYIRFNPSDNALKELKVAYRNESPKKKAMTLEE-QMLFE 191

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------- 191
             L ++    KW       I  ++   G+R+ E   L   ++  D   + +         
Sbjct: 192 EYLSNSDEYKKW-----YPIFIVMLWTGMRVGEVTGLQWDDLDFDNGLINVNRTLVYYSK 246

Query: 192 GKGDKIRIVPLLPSVR-------------------KAILEYYDLCPFDLNLNIQLPLFRG 232
           GKG   R     P                      + + + + +   D     +  +F  
Sbjct: 247 GKGLNNRYAINTPKTASGKRSIPMVQKVKDAFLMERELQKTFGIKCCDSIDGFKDFVFLN 306

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLP---------------LSTTAHTLRHSFATHLLSNG 277
             GK  N G   + +R++ R   L                   + H  RH+F T L    
Sbjct: 307 RFGKVHNNGTLNKALRRIVRDCNLSIMDKNKSNSNDILLVPHLSNHIFRHTFTTRLNEQN 366

Query: 278 GDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMME 312
            + +++QSILGH  ++TT  IY +       + M E
Sbjct: 367 INTKAMQSILGHSDITTTMDIYVDATEDFKIEQMGE 402


>gi|302346798|ref|YP_003815096.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302150347|gb|ADK96608.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 421

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 57/285 (20%), Positives = 104/285 (36%), Gaps = 25/285 (8%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           K T++++    + F+ FL     E    +   +      R F+         + ++   L
Sbjct: 130 KATVRAFRDSKKSFVQFLKTRRNEDCLPKEADKDLIESYRLFM--LSDLGNKESTVSNRL 187

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +   ++  ++ +   E     +        +     E+ ALT  D   L +    + +
Sbjct: 188 RHLHQVIRKAQQERYIREDPFELID-------IETPTYERNALTSDDLHKLLSYRPHRSV 240

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           D     I  L    GL  S+   L   ++    D +  + +     + R +  L  + + 
Sbjct: 241 DNHCRLIFLLGCFTGLAFSDLKKLRMDDVYTLDDGRRYISLCRTKTQNRSIVPLLPIAEE 300

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS--TTAHTLRH 267
           IL        +  L  + P              F R IR +    GLP     T+HT RH
Sbjct: 301 ILTIVSDGQKEGLLFREFP----------TNSHFNRKIRDIIIKAGLPSHTEATSHTARH 350

Query: 268 SFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +FAT   L NG  + ++  +LGH  +STT++Y  V+       M 
Sbjct: 351 TFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKSKIAREMQ 395


>gi|42528242|ref|NP_973340.1| phage integrase family site specific recombinase [Treponema
           denticola ATCC 35405]
 gi|41819512|gb|AAS13259.1| site-specific recombinase, phage integrase family [Treponema
           denticola ATCC 35405]
          Length = 269

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 47/295 (15%), Positives = 111/295 (37%), Gaps = 35/295 (11%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++ + L+    LS+ TL SY    + +                   +S   + A+     
Sbjct: 6   SFEEYLKKS-NLSQNTLTSYLWTVKYYTEHY-------------DSVSKENLLAYKGYLI 51

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                 +++   + GI  +L+++ K ++        ++ +K        L  +  ++  D
Sbjct: 52  EF-FKPKTVNLRIQGINKYLQFIHKDQL-------QLKFVKVQQK--NFL--ENVISNAD 99

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              L +S +          +++ L   G R+SE + +  +++        +  KG K+R 
Sbjct: 100 YQFLKSSLKRDENREW-YFVVWFLAATGARVSELIQIKVEHVKL--GYFDLYSKGGKLRR 156

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           + +   +++  L++ +    D        LF     K +      + ++   R  G+   
Sbjct: 157 LYIPKILKEEALQWLESIGRD-----SGYLFLNRFEKHITTRGIAQQLKNYARKYGINEK 211

Query: 260 T-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
               H+ RH +A + L    D+  +  ++GH  + TT+IY    +    + +  I
Sbjct: 212 VVYPHSFRHRYAKNFLEKFNDISLLADLMGHESIETTRIYLRRTASEQRELVDSI 266


>gi|288799612|ref|ZP_06405071.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332860|gb|EFC71339.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 410

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 66/286 (23%), Positives = 108/286 (37%), Gaps = 24/286 (8%)

Query: 32  SKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           SK +LQ Y    R F  FL   Y  + I +         +   ++S          +  +
Sbjct: 129 SKDSLQKYSVLRRHFSEFLIHKYGRKDIGLTEFTPSVVQDFELYLST--VAGCAYNTSVK 186

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +  +K+   Y +KR        LN R   +  +    L +++ + +V+  L     E  
Sbjct: 187 KMKALKTVTIYAQKRGYLLHDPFLNHRFHLEPVNR-GFLTDEEIMKIVNKDLAIQRLEL- 244

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVR 207
               R+  I       GL   +  +LTP NI    D Q  +  + K      V LL   +
Sbjct: 245 ---VRDVFIFSCF--TGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPK 299

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             I +Y      D           G     L       Y++++    G+  + T H  RH
Sbjct: 300 SIIAKYSHKTYRD-----------GKLFPILTNQKTNAYLKEIADLCGVKKNLTFHLARH 348

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +FAT  LS G  + S+  +LGH  + TTQIY  + +K     M ++
Sbjct: 349 TFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQL 394


>gi|257876357|ref|ZP_05656010.1| phage integrase [Enterococcus casseliflavus EC20]
 gi|294619900|ref|ZP_06699276.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1679]
 gi|257810523|gb|EEV39343.1| phage integrase [Enterococcus casseliflavus EC20]
 gi|291593837|gb|EFF25335.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1679]
          Length = 380

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 47/307 (15%), Positives = 102/307 (33%), Gaps = 48/307 (15%)

Query: 36  LQSYECDTR-----QFLIFLAFYTEEKITIQTIRQLSYT----EIRAFISKRRTQKIGDR 86
           + +Y    +         F   +         + ++S +    ++  +    +      +
Sbjct: 77  IDNYRTRVKPSSVAVAQRFCKNHILPAFGELRLDKISVSYCQKQVNEWHKTLKQYGFLRK 136

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV--DNVLLH 144
           +            K+    ++  ++ +           LPR + E+Q L     D + L 
Sbjct: 137 TTA-------QIFKFGVAMEVCKDNPMSK-------TLLPRKIEEEQPLKFYTKDQLQLF 182

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM----------------DDQSTL 188
             +  +    +      LL   G+R SEAL+L  ++I                  +Q  L
Sbjct: 183 LKNTKENNSVKLYTFFRLLAYTGMRKSEALALQWEDIDYFNKTITIGKTIAQDEFNQVVL 242

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL------NLNIQLPLFRGIRGKPLNPGV 242
           ++    +  R + L     K +  +       +        + +  LF     K   P V
Sbjct: 243 QVPKTKNSSRTIQLDDFTLKQLRIWQQEQMKIMILYGYNTNSPKQFLFTTNTNKLYYPQV 302

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNV 301
              ++  + +   +    T H  RH+  + L  +G  ++ +Q  LGH  + TT  IY +V
Sbjct: 303 VNDWLDWIYKKTPMEPQITPHGFRHTHCSLLFESGASIKEVQERLGHKDIKTTMNIYAHV 362

Query: 302 NSKNGGD 308
             ++   
Sbjct: 363 TPQSIKK 369


>gi|308234991|ref|ZP_07665728.1| phage family integrase/recombinase protein [Gardnerella vaginalis
           ATCC 14018]
 gi|311113898|ref|YP_003985119.1| phage integrase [Gardnerella vaginalis ATCC 14019]
 gi|310945392|gb|ADP38096.1| phage integrase [Gardnerella vaginalis ATCC 14019]
          Length = 277

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 61/290 (21%), Positives = 116/290 (40%), Gaps = 41/290 (14%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +WL+ LE   G ++ T++           +       ++  Q    ++  ++    +   
Sbjct: 19  HWLEYLEAS-GYTEDTIR---------CRYYKISRLARLLNQPPEDITGQQLVELFAH-- 66

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q     + K   S I+SF  Y+ + +I   +  + +  ++K  ++P    +      + 
Sbjct: 67  -QDWKRETRKGYSSTIRSFYSYMIEEEIIDVNPTVKLPKIRKEYAIPHPCPDYIIRGALA 125

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQGKGDKI 197
            V  +  +E         A+L L   CGLR SE   ++  +  +++    L + GKG K 
Sbjct: 126 RVRGNKEYE---------AMLRLGAECGLRRSEIAQVSSSDIMMLNTHPQLLVHGKGRKE 176

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R VP+ P + + I             N    +F G     +       +I QL     L 
Sbjct: 177 RTVPIAPDLAQII------------ANKHGYMFPGRWTGHVEASYIAHHISQL-----LG 219

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
              + H+LRH +AT+   +  DL  +  +LGH  + TTQIY ++   +  
Sbjct: 220 NGYSTHSLRHRYATNAYESTHDLLLVSKLLGHASVETTQIYISLTFPDSS 269


>gi|227552270|ref|ZP_03982319.1| bacteriophage integrase [Enterococcus faecium TX1330]
 gi|257895152|ref|ZP_05674805.1| phage integrase [Enterococcus faecium Com12]
 gi|257897764|ref|ZP_05677417.1| phage integrase [Enterococcus faecium Com15]
 gi|261208892|ref|ZP_05923329.1| phage integrase [Enterococcus faecium TC 6]
 gi|289567444|ref|ZP_06447804.1| phage integrase [Enterococcus faecium D344SRF]
 gi|293378034|ref|ZP_06624211.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium PC4.1]
 gi|293569081|ref|ZP_06680393.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1071]
 gi|294616782|ref|ZP_06696529.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1636]
 gi|227178600|gb|EEI59572.1| bacteriophage integrase [Enterococcus faecium TX1330]
 gi|257831717|gb|EEV58138.1| phage integrase [Enterococcus faecium Com12]
 gi|257835676|gb|EEV60750.1| phage integrase [Enterococcus faecium Com15]
 gi|260077394|gb|EEW65114.1| phage integrase [Enterococcus faecium TC 6]
 gi|289160757|gb|EFD08697.1| phage integrase [Enterococcus faecium D344SRF]
 gi|291588262|gb|EFF20098.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1071]
 gi|291590354|gb|EFF22116.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1636]
 gi|292643352|gb|EFF61485.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium PC4.1]
          Length = 380

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 47/307 (15%), Positives = 102/307 (33%), Gaps = 48/307 (15%)

Query: 36  LQSYECDTR-----QFLIFLAFYTEEKITIQTIRQLSYT----EIRAFISKRRTQKIGDR 86
           + +Y    +         F   +         + ++S +    ++  +    +      +
Sbjct: 77  IDNYRTRVKPSSVAVAQRFCKNHILPAFGELRLDKISVSYCQKQVNEWHKTLKQYGFLRK 136

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV--DNVLLH 144
           +            K+    ++  ++ +           LPR + E+Q L     D + L 
Sbjct: 137 TTA-------QIFKFGVAMEVCKDNPMSK-------TLLPRKIEEEQPLKFYTKDQLQLF 182

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM----------------DDQSTL 188
             +  +    +      LL   G+R SEAL+L  ++I                  +Q  L
Sbjct: 183 LKNTKENNSVKLYTFFRLLAYTGMRKSEALALQWEDIDYFNKTITIGKTIAQDEFNQVVL 242

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL------NLNIQLPLFRGIRGKPLNPGV 242
           ++    +  R + L     K +  +       +        + +  LF     K   P V
Sbjct: 243 QVPKTKNSSRTIQLDDFTLKQLRIWQQEQMKIMILYGYNTNSPKQFLFTTNTNKLYYPQV 302

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNV 301
              ++  + +   +    T H  RH+  + L  +G  ++ +Q  LGH  + TT  IY +V
Sbjct: 303 VNDWLDWIYKKTPMEPQITPHGFRHTHCSLLFESGASIKEVQERLGHKDIKTTMNIYAHV 362

Query: 302 NSKNGGD 308
             ++   
Sbjct: 363 TPQSIKK 369


>gi|160935333|ref|ZP_02082715.1| hypothetical protein CLOBOL_00228 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441691|gb|EDP19391.1| hypothetical protein CLOBOL_00228 [Clostridium bolteae ATCC
           BAA-613]
          Length = 281

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 65/308 (21%), Positives = 115/308 (37%), Gaps = 46/308 (14%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E L   +N+L  LE ER  S  T++ Y  D   FL +L+             ++S   + 
Sbjct: 9   EKLCLFRNYL--LEEER--SAATIEKYGRDVLAFLSWLSDR----------EEISKEVVV 54

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK------ITTESNILNMRNLKKSNSLP 126
            +  +    K    S    L  +  FL ++ K+           +               
Sbjct: 55  GY-KQAIIGKYKTTSANSMLVSVNRFLDFIGKKDCQVKLFKIQRNPF---------RKKD 104

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L +++   L+   L   +  +  +     AI       G+R+SE   +T +    ++ 
Sbjct: 105 KELTKEEYNRLI---LAAKAKSSSRLFLMIQAI----CSTGIRVSEHRFITREA--LERG 155

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            + I  KG   R+V L   ++K +L+Y        N     P+F    G P+N       
Sbjct: 156 RITIYNKGK-ERVVFLPKKLKKCLLQYCRQ-----NGIYSGPVFVTKNGTPVNRCNVWAE 209

Query: 247 IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           ++ L +  G+ P     H LRH FA        D+  +  ILGH  +  T+IYT  + + 
Sbjct: 210 MKALCKEAGVSPEKVFPHNLRHLFAVTYYRMQKDIVHLADILGHSNIEYTRIYTFTSEEE 269

Query: 306 GGDWMMEI 313
               +  +
Sbjct: 270 HARVLSRM 277


>gi|260892725|ref|YP_003238822.1| integrase family protein [Ammonifex degensii KC4]
 gi|260864866|gb|ACX51972.1| integrase family protein [Ammonifex degensii KC4]
          Length = 378

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 96/278 (34%), Gaps = 27/278 (9%)

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
           +E +      +L   ++   +++   + +   + +     ++  +++  KRK+  +    
Sbjct: 98  KELLGHVPAGKLGPADVEKALARMEGE-LSPATCRYRFGLLRQAMRWAVKRKLLGQDPTE 156

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            +   +      R  +E++    +  +      ++        A   L    G+R  E L
Sbjct: 157 GVAPPRAPRKEVRVWSEEEIARFLGVL------DSSGHRPAVKAFFRLALSTGMRKGELL 210

Query: 175 SLTPQNIMDDQSTLRIQGKGDKI-------------RIVPLLPSVRKAILEYYDLCPFDL 221
           +L  +++  ++  L ++                   R V L     + +         + 
Sbjct: 211 ALRWEDVDFEKGCLYVRRTRCHHTGGVHEPKSPSSCRKVALDAGSLECLRRLKREQAREK 270

Query: 222 -----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
                    Q  +F   +GK L+        R L R  G+P     H LRH+ A+ LL  
Sbjct: 271 LRAGAEWCEQGLVFATRKGKALSVFRLACTFRSLCRRAGVP-EIRIHDLRHTHASLLLRQ 329

Query: 277 GGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           G   + +Q  LGH  +  T   Y+++        +  +
Sbjct: 330 GVHPKVVQERLGHSSVKITLDTYSHLLPDAQEQAVKAL 367


>gi|298243765|ref|ZP_06967572.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297556819|gb|EFH90683.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 385

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 57/314 (18%), Positives = 109/314 (34%), Gaps = 43/314 (13%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            WL+ +      +  T   Y          +  +   +I    IR L+   I+   +K+ 
Sbjct: 72  EWLETVCKPPYRAPSTYLHYRS-------AMKKHIIPEIGHLKIRNLTPRHIQELYAKKI 124

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  ++K     +   L    + ++ +++    +   K        L E+QA  L++
Sbjct: 125 RDGAKPPTIKLMHEVLSGSLNSALQWEMVSKNVASQVTVPKGVQREIVPLTEEQARVLLE 184

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI-- 197
               H              ++ L    GLR  E  +L   +I  D   L I+     +  
Sbjct: 185 IARGHRLEG----------MILLAVTTGLRRGEITALKWSDIDFDARLLFIKHTVSHVAF 234

Query: 198 --------------RIVPLLPSVRKAILEYY--------DLCPFDLNLNIQLPLFRGIRG 235
                         R + L  +V + + ++Y        ++       N +  +F     
Sbjct: 235 MGYVEKEPKTRAGKRTIHLPEAVIQTLQQHYSEQKAKAEEMGLSLSEWNPKGLVFLSKLR 294

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             ++     +   Q+    GLP     H LRHS AT LL+ G   + +Q +LGH  ++ T
Sbjct: 295 SYMHSPQTLKEFHQIVAQAGLPK-MRFHDLRHSAATILLAKGVHPKVVQELLGHSSIAMT 353

Query: 296 Q-IYTNVNSKNGGD 308
             IY++V      +
Sbjct: 354 MNIYSHVMPSMRKE 367


>gi|67077939|ref|YP_245559.1| integrase-recombinase [Bacillus cereus E33L]
 gi|66970245|gb|AAY60221.1| integrase-recombinase [Bacillus cereus E33L]
          Length = 390

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 67/313 (21%), Positives = 124/313 (39%), Gaps = 34/313 (10%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE------EKITIQT--IRQLSYTEIRAF 74
           ++++ ++   + T +SY  +   F   +  + E      E++  +   ++ L    IR +
Sbjct: 75  KDMDEKKNRKEDTKKSYISEILSFCQCMVQHAEAFELDGEEVQKKDSLLKTLQPWHIRKY 134

Query: 75  ISKRRT-------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--NLKKSNSL 125
            S  +        +     +L +    I+SFLK+L       +     ++  N+ + +  
Sbjct: 135 NSWLKQVENGRNGETYAVATLAKKTVLIRSFLKHLHVFSYIEKPLHEELQRANVNEQDRP 194

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDD 184
            R L+  + + ++           +     N  IL  L   G RI E  +   +N   D 
Sbjct: 195 NRDLSYDEVMKILGFY-------KERGHLVNYTILLALASTGARIQELCTARVKNLHYDG 247

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGV 242
           +  L++ GKGDK+R + +   + + I E      F   L+   + PLF   RG   N   
Sbjct: 248 KYWLKVTGKGDKVRQLFISEHLFQCICEMRRRRGFQTVLDRGDESPLFVNQRGNSYNSKT 307

Query: 243 FQRYIRQLRRYLGLPL------STTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTT 295
               +  + +   L          TAHT RH+FA   +  G  DL  +   LGH  + TT
Sbjct: 308 LSNQVTDMIKKTNLEFLLYRENPVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHEDIQTT 367

Query: 296 QIYTNVNSKNGGD 308
           +IY   + K   +
Sbjct: 368 KIYLEKHMKRKNN 380


>gi|150018430|ref|YP_001310684.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149904895|gb|ABR35728.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 375

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 55/349 (15%), Positives = 127/349 (36%), Gaps = 79/349 (22%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR---------- 79
             ++ TL+ Y    + +  +L             ++++  ++  F++  +          
Sbjct: 39  NFARNTLRMYCQHLKLYFEYLEQRE------LDFQKVTIDDLALFVNWLQNPYKSLKVIP 92

Query: 80  ----TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN----------------- 118
                     R++   ++ + +F  Y+ + +  + +    ++                  
Sbjct: 93  TNKVDSARSPRTINIVVNTVLTFYDYILRHEEYSNNISDRLKKFVSAPGRNFKGFLYGIA 152

Query: 119 ------------LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
                       LK   S P+ L +++   L++             + R+  +L LLY  
Sbjct: 153 HEQKKVTSNILRLKVPKSKPKTLTKEEITILINTC----------NNFRDKFLLNLLYET 202

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKI-----------RIVPLLPSVRKAILEYYD 215
           G+RI EALSL  ++       + ++ +G+             R + +  ++    +EY  
Sbjct: 203 GIRIGEALSLWIEDFDISDMIIDLKDRGELENNAEIKTVSSPRRIDISQNLADIFMEYVA 262

Query: 216 LCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
               +     ++ + +  G + KP+N        R L++   +    T H  RHS  T L
Sbjct: 263 EYHTEEVETNHVFIKISGGNQYKPMNYTDVDNLFRILKKKTEI--HVTPHMFRHSSLTIL 320

Query: 274 LSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPSI 321
              G +   ++   GH  + TT Q Y + + K     + E +++T P++
Sbjct: 321 RMAGWEPELLRVRAGHKNIYTTMQTYIHPSDKE----ITEEFNKTQPNL 365


>gi|220909513|ref|YP_002484824.1| integrase family protein [Cyanothece sp. PCC 7425]
 gi|219866124|gb|ACL46463.1| integrase family protein [Cyanothece sp. PCC 7425]
          Length = 498

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 58/294 (19%), Positives = 108/294 (36%), Gaps = 40/294 (13%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102
            ++F  FL+    EK       QL    I  +++    +     +    L  I+ FL   
Sbjct: 102 LKKFSTFLS----EKYPSLEPAQLDRAVIIDYLAYLAAKHPKATTRALFLCDIRDFLDLC 157

Query: 103 KKRKITTESNILN--MRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
            + +      ++   +R     K+S +LPR + E     ++D ++ H     + +     
Sbjct: 158 YQNEWL---PVIRYLIRKEDYPKRSKALPRYIPE----CVMDQLMSHVDDLPEPVMR--- 207

Query: 158 AILYLLYGCGLRISEALSLTPQ----NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            +  ++  CG+R+SE L L P     +   D      Q K  K   +P+   + + I E 
Sbjct: 208 -MTLVISECGMRVSELLYLKPDCLLQDKAGDWFLRYYQFKMKKEITIPVSREIVRIIQEQ 266

Query: 214 YDLCPFDLNLNIQLPLFRGI---------RGKPLNPGVFQRYIRQLRRYLGLPLSTT--- 261
                  L  + +  LF            R KP+    F R++  L     +   +    
Sbjct: 267 RRYIQEHLGDSYE-YLFCSSLSGPSGFRPRPKPMIRESFARFLNDLAEKHNICDESGKLW 325

Query: 262 ---AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
               H  RH+  T +++NG     IQ  LGH     T +Y  ++ +     + +
Sbjct: 326 RFQTHQFRHTVGTRMINNGVPQHIIQRYLGHESPEMTAVYAQIHDQTMKQEIAK 379


>gi|284048402|ref|YP_003398741.1| integrase family protein [Acidaminococcus fermentans DSM 20731]
 gi|283952623|gb|ADB47426.1| integrase family protein [Acidaminococcus fermentans DSM 20731]
          Length = 432

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 52/315 (16%), Positives = 122/315 (38%), Gaps = 37/315 (11%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + L +++G+   TL +Y+              +E+   + I ++  ++ + ++ K +++ 
Sbjct: 95  RYLMLKKGVKPNTLSNYKFVVNAL-------KKERFAQKAIGKVKMSDAKLWLIKLQSEG 147

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
            G  S+      ++   +     +I   +      N +    L      ++AL+  D  +
Sbjct: 148 KGYSSIHSIRGVVRPAFQMAVDDEILWRNPF----NFEMKEVLINDSVRREALSKRDMRI 203

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK--GDKIRIV 200
                +      R    +++L+  GLRISE   LT  +I  ++ T+ +  +      R  
Sbjct: 204 FLDFVKNDEYYCRYYEGIFILFHTGLRISEFCGLTVNDIDLEKRTINVDKQLQKGNERKY 263

Query: 201 PLLPSVRKA------------------ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
            +L +  KA                  +          +   +   LF    G P+    
Sbjct: 264 YILSTKTKAGARLLPMTDEVYQCFVTILQRRRPPKVEPIIDGVGKFLFYDKNGNPMVALH 323

Query: 243 FQRYIRQLR-RYLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
           ++ Y +Q+  +Y  +        T H  RH++ T++  +G   +++Q ++GH  +S T  
Sbjct: 324 WEHYFKQIVNKYNRIYKYQLPKVTPHVCRHTYCTNMALSGVSAKTLQYLMGHSDISITLN 383

Query: 297 IYTNVNSKNGGDWMM 311
           +YT++   +    + 
Sbjct: 384 VYTHIKFDDAQKEVE 398


>gi|281423749|ref|ZP_06254662.1| integrase [Prevotella oris F0302]
 gi|282881646|ref|ZP_06290309.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281304405|gb|EFA96502.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281402151|gb|EFB32982.1| integrase [Prevotella oris F0302]
          Length = 411

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 59/291 (20%), Positives = 108/291 (37%), Gaps = 27/291 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K TL  Y    +    FL   Y  + I ++ +     ++   F+  R  +     ++  
Sbjct: 130 AKGTLLKYRTVYKHLQEFLDIRYHVKDIALKELTPAFISDFEMFL--RTDKHCCTNTVWL 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +  +++ +      +  T         +KK  +    L +++   L+D  L +   E  
Sbjct: 188 YVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKEEIRLLMDGKLKNAKQE-- 244

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRI-QGKGDKIRIVPLLPSV 206
                   +       GL  S+  SLT +N     D+   + I + K   +  + LL   
Sbjct: 245 ----LYRDLYLFCAFTGLSFSDMRSLTEENIRTYFDEHEWININRQKTGVVSNIRLLDIA 300

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            + I +Y  LC           +F          G     IR + +  G+    T H  R
Sbjct: 301 NRIIGKYRGLC-------EDGRIFPVPHYNTCLAG-----IRAVAKRCGITKHITWHQSR 348

Query: 267 HSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           H+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +     M  +  +
Sbjct: 349 HTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMENLVAR 399


>gi|303327306|ref|ZP_07357748.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
 gi|302863294|gb|EFL86226.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
          Length = 359

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 97/281 (34%), Gaps = 35/281 (12%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK------IGDRSLKRSLSGIKSF----L 99
              +   +   Q I  LS  +I  F  +  T+       +   ++ + LS  K       
Sbjct: 95  YEHHIRPRFGHQYILALSELDIENFKQELLTRGGKQGTALKAATVAKILSDFKRIVSRAF 154

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           K+         + +  +          R L  K+A  ++D + L        +  +   I
Sbjct: 155 KWNLVEGR---NPLAGVTVKNAFVKRERYLTHKEAGQILDGLSL--------VSCKLYHI 203

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
             +    GLR++E L+L   +I   Q  +R++      R   +  +  K +         
Sbjct: 204 AKIALYTGLRLNEILNLRGNDINISQGIMRVRDGKAGERTAYIPKNFEKELKNLIP---- 259

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-------PLSTTAHTLRHSFATH 272
               +    LF G +G+ L+  V      +     GL             HT RH+F + 
Sbjct: 260 ---ADNSAFLFTGSKGQRLSSNVTSNAFARFMEDTGLNGSTVDSEHKIVFHTFRHTFCSW 316

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           L   G  L +I  + GH  +S T+ Y  ++     D +  +
Sbjct: 317 LAIEGVPLFTIARLAGHKTISMTERYAKLSPAAQRDALDRL 357


>gi|294775384|ref|ZP_06740903.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294450766|gb|EFG19247.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 267

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 105/287 (36%), Gaps = 34/287 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            L+K T+ SY    + FL                 +++   + A+      +    +++ 
Sbjct: 13  NLAKNTVTSYVWTVQYFLNHYG-------------EVNKKNLLAYKGYL-VENFKPQTVN 58

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             L GI  +L++ K+ K+        ++ +K        L  +  ++  D   L    + 
Sbjct: 59  LRLQGINKYLEFTKQEKL-------KVKFVKVQQK--NFL--ENVISDADYKFLKAQLKV 107

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              +     I++ +   G R+SE L +  ++I      L +  KG KIR + +  ++   
Sbjct: 108 DGYEEW-YFIVWFMAATGARVSELLHIKAEHIQI--GHLDLYSKGGKIRRLYIPKNLSTE 164

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHS 268
             ++               +F    G+ +        ++      G+       H+ RH 
Sbjct: 165 AAKWLREIGL-----TSGYIFLNRFGQRITTRGIASQLKHFAEKYGMNKEVVYPHSFRHR 219

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           FA + L    DL  +  ++GH  + TT+IY    +      + ++ +
Sbjct: 220 FAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDKVVN 266


>gi|295841016|dbj|BAJ06888.1| integron integrase intI [uncultured bacterium]
          Length = 421

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 62/298 (20%), Positives = 117/298 (39%), Gaps = 62/298 (20%)

Query: 18  RQNWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
            +  L+ L IE   R  S  T Q+Y     +FL+F +F TE  IT+  +          F
Sbjct: 145 FEKLLERLVIEIRSRQYSIRTEQAYSDWVLRFLVFSSFETERDITVDKVSV--------F 196

Query: 75  ISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           I      + +   +  ++L+ +    K +   ++  +   ++ +  KK   LP  L+  +
Sbjct: 197 IEYLAVKRNVAASTQGQALNALVFLFKRVLHVELEEK---IDFQRAKKPRRLPVVLSRGE 253

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-G 192
              L+  V              +  +  L+YG GLR+ E + L   +I  D   + ++ G
Sbjct: 254 INELLAAV----------SHDLHRLMASLMYGAGLRLMECIRLRVFDIDFDYGQIVVRQG 303

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL------------------------- 227
           KG+K R+VPL   ++  +++  +        +++                          
Sbjct: 304 KGNKDRVVPLPEKLKPELMQQINKVAQLDKKDLEAGYGEVVLPGALSRKYKNAARELRWQ 363

Query: 228 PLFRGIR-----------GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
            LF  ++              L+    Q+ +++    +GL    + H LRH+FATHLL
Sbjct: 364 YLFPSVKLSTDPRSKKTMRHHLHENNIQKSVKKSAEQIGLMKKVSCHALRHTFATHLL 421


>gi|116872612|ref|YP_849393.1| phage integrase family protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741490|emb|CAK20614.1| phage integrase family protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 377

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 112/296 (37%), Gaps = 34/296 (11%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +E+ LS  TL SYE   R+   +             + ++   E + FI+    +++   
Sbjct: 79  VEKILSDSTLNSYENAFRELKDYFGNIK--------LDKIEPLEYQLFINHL-GKELAYS 129

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           +++     I +             +    ++   +  +  +         L D+ + H  
Sbjct: 130 TVETRHKKITAMYNKAIMLNYVKSNPTSGVKIAGQDVAAMK------LQYLEDDQVAHLK 183

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------------GK 193
              +   + + A+++L    G+R  E ++LT  +I  ++  + ++              K
Sbjct: 184 KLVEDSMSVSRAVIFLAIQTGMRFGEIIALTWNSINFERQRIVVKNSWDYKKKKTFVPTK 243

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLN----LNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
            ++ R + +  S    + +Y       ++     N    +F     +P++     + +++
Sbjct: 244 TEERRTIFIDDSTVDYLKKYKKWSKEYISNENITNDLSLVFCTRDNQPIDNQSCNKMLKK 303

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           L   +      T H LRH+     L  G D+  +   LGH  +STT   YT+V+ K
Sbjct: 304 LFMNIS-NEYVTLHKLRHTHTVQCLEAGLDIIYVSERLGHADISTTMEYYTHVSKK 358


>gi|293115744|ref|ZP_05792867.2| transposase [Butyrivibrio crossotus DSM 2876]
 gi|292808507|gb|EFF67712.1| transposase [Butyrivibrio crossotus DSM 2876]
          Length = 337

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 51/320 (15%), Positives = 125/320 (39%), Gaps = 42/320 (13%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ- 81
           + L+ + G+   TL +Y    R  L        E    Q I ++  ++ + F+ K + + 
Sbjct: 3   RYLKTKVGMRPNTLANY-NFVRNILK------NEPFGSQKISKIKTSDAKLFLIKMQQED 55

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLKKSNSLPR-ALNEKQALTLVD 139
             G  ++K     ++   +      +  ++     +  +  ++++ R A+++ Q    + 
Sbjct: 56  GRGHSTIKTVRGVLRPAFQMAVDDDVLMKNPFQFELAGVVVNDAVTREAISKDQMQKFLK 115

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------- 191
            +          +  +   ++Y+L+  G+RISE   LT ++I  ++ T+ I         
Sbjct: 116 FI------HDDVVYCKYYEVIYILFHTGMRISEFCGLTMRDIDLEKRTININHQLQRTSK 169

Query: 192 ------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
                       G         +    +  I +  D     +       LF    G PL 
Sbjct: 170 REYVIEPTKTNAGTRVIPMTNEVTEMFQAIIEDRPDYKVEKVVDGYTGFLFLDKDGMPLV 229

Query: 240 PGVFQRYI-RQLRRYLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              ++      + RY  +      + T H  RH++ +++  +G + +++Q ++GH  ++ 
Sbjct: 230 AMHWEHRFNHMVSRYNEIYKVQMPNITPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDIAV 289

Query: 295 T-QIYTNVNSKNGGDWMMEI 313
           T  +YT+V  ++    + ++
Sbjct: 290 TLNVYTHVGLEDAEKELQKM 309


>gi|265752104|ref|ZP_06087897.1| integrase [Bacteroides sp. 3_1_33FAA]
 gi|263236896|gb|EEZ22366.1| integrase [Bacteroides sp. 3_1_33FAA]
          Length = 267

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 106/287 (36%), Gaps = 34/287 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            L+K T+ SY    + FL                 +++   + A+      +    +++ 
Sbjct: 13  NLAKNTVTSYVWTVQYFLNHYG-------------EVNKKNLLAYKGY-WVENFKPQTVN 58

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             L GI  +L++ K+ K+        ++ +K        L  +  ++  D   L    + 
Sbjct: 59  LRLQGINKYLEFTKQEKL-------KVKFVKVQQK--NFL--ENVISDADYKFLKAQLKV 107

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              +     I++ +   G R+SE L +  ++I      L +  KG KIR + +  ++R  
Sbjct: 108 DGYEEW-YFIVWFMAATGARVSELLHIKAEHI--KVGYLDLYSKGGKIRRLYIPKNLRTE 164

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHS 268
             ++               +F    G+ +        ++      G+       H+ RH 
Sbjct: 165 SEKWLKNQGL-----TSGYIFLNRFGQRITTRGIASQLKHFAEKYGMNKEVVYPHSFRHR 219

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           FA + L    DL  +  ++GH  + TT+IY    +      + ++ +
Sbjct: 220 FAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDKVVN 266


>gi|9635596|ref|NP_061531.1| integrase [Pseudomonas phage D3]
 gi|6166382|gb|AAF04808.1| integrase [Pseudomonas phage D3]
 gi|9885346|gb|AAG01406.1| integrase [Integration vector pVH-2]
          Length = 369

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 48/294 (16%), Positives = 98/294 (33%), Gaps = 28/294 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +LQ+       ++   +SYE    +      ++         +  L   +IR + + R  
Sbjct: 67  YLQH-------ARQHQRSYETTVHRIKPLREYFAGR-----VVNDLGGQDIRGYGAHRLD 114

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                 ++ R L+ + + + +          N +  R ++++    R L   +   L   
Sbjct: 115 AGASPATINRELAALSAAINHCNTELEWALPNPVKGRKMREAEGRDRWLTRAEVEALCR- 173

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKI 197
                +   +         + L    G R  E L L  + +      + +     K  K 
Sbjct: 174 -----AARGQKFGPMLEDFIRLAVNTGCRREEMLGLEWRRVDFANRLIYLEASHTKAGKR 228

Query: 198 RIVPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           R +P+      A+                      G R   L+ G      +Q  +   +
Sbjct: 229 RSIPINEGAMAALKRRMAFRSETSPECPWVFARANGDRVISLSAG-----FKQACQAAKI 283

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               T H LRH+ A  L+S G  L  ++ +LGH  ++ T+ Y ++      D +
Sbjct: 284 A-DFTIHDLRHTCAAWLVSAGVPLADVRDLLGHSTVAMTERYAHLAPARVRDAV 336


>gi|83814492|ref|YP_444224.1| integrase/recombinase [Salinibacter ruber DSM 13855]
 gi|83755886|gb|ABC43999.1| integrase/recombinase [Salinibacter ruber DSM 13855]
          Length = 451

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 88/252 (34%), Gaps = 50/252 (19%)

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +    + + + ++     +      K    LP  L+ ++   L               
Sbjct: 199 RALIFLYEQVLEIELDDIGPLDRADRPK---RLPTVLSREEVRQLF----------AALS 245

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAIL 211
              N    +LLYG GLR+SEAL L  + +    S L +  GKG   R   L   +   + 
Sbjct: 246 PGPNRLTAHLLYGSGLRLSEALRLRVKELDVGTSRLHVWDGKGGTDRTTVLPERLHGPLR 305

Query: 212 ------------------------------------EYYDLCPFDLNLNIQLPLFRGIRG 235
                                               E+     F      + P    +R 
Sbjct: 306 RHLKTVKAQHEADCADGVGGVYLPDAIAEKYPTAKTEWRWQYVFPSTTLSEDPRSGAVRR 365

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
              +    QR +++      +    T HTLRHSFATH L +G D+R+IQ +L H +L TT
Sbjct: 366 HHRSDSAVQRAVKKAADATDIEKRATCHTLRHSFATHRLQDGTDVRTIQKLLAHEQLRTT 425

Query: 296 QIYTNVNSKNGG 307
             Y +V  ++  
Sbjct: 426 MQYVHVLEQSDD 437


>gi|327314345|ref|YP_004329782.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|326946202|gb|AEA22087.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 408

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 65/289 (22%), Positives = 109/289 (37%), Gaps = 24/289 (8%)

Query: 32  SKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           SK +LQ Y    R F  FL   Y  + I +         +   ++S          +  +
Sbjct: 129 SKDSLQKYSVLRRHFSEFLIHKYGRKDIGLTEFTPSVVQDFELYLST--VAGCAYNTSVK 186

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +  +K+   Y +KR        LN R   +  +    L +++ + + +        E  
Sbjct: 187 KMKALKTVTIYAQKRGYLLHDPFLNHRFHLEPVNR-GFLTDEEIMKIANKDFGIQRLEL- 244

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVR 207
               R+  I       GL   +  +LTP NI    D Q  +  + K      V LL   +
Sbjct: 245 ---VRDVFIFSCF--TGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPK 299

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + I +Y      D           G     L       Y++++    G+  + T H  RH
Sbjct: 300 RIIAKYSGKTYRD-----------GKLFPILTNQKTNAYLKEIADLCGVKKNLTFHLARH 348

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +FAT  LS G  + S+  +LGH  + TTQIY  + +K     M ++ D+
Sbjct: 349 TFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQLADK 397


>gi|298383495|ref|ZP_06993056.1| integrase [Bacteroides sp. 1_1_14]
 gi|298263099|gb|EFI05962.1| integrase [Bacteroides sp. 1_1_14]
          Length = 411

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 57/291 (19%), Positives = 109/291 (37%), Gaps = 27/291 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K TL+ Y    +    FL   Y  + I ++ +     ++   F+  R  +     ++  
Sbjct: 130 AKGTLEKYRIVYKHLQEFLDIRYHVKDIALKELTPAFISDFEMFL--RTDKHCCTNTVWL 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +  +++ +      +  T         +KK  +    L +++   L++  L +   E  
Sbjct: 188 YVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKEEIRLLMEGKLKNAKQE-- 244

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRI-QGKGDKIRIVPLLPSV 206
                   +       GL  S+  +LT +N     D+   + I + K   +  + LL   
Sbjct: 245 ----LYRDLYLFCAFTGLSFSDMRNLTEENIRTYFDEHEWININRQKTGVVSNIRLLDIA 300

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            + I +Y  LC           +F          G     IR + +  G+    T H  R
Sbjct: 301 NRIIGKYRGLC-------GDGRIFPVPHYNTCLAG-----IRAVAKRCGITKHITWHQSR 348

Query: 267 HSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           H+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +     M  +  +
Sbjct: 349 HTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMENLAAR 399


>gi|268609808|ref|ZP_06143535.1| hypothetical protein RflaF_09962 [Ruminococcus flavefaciens FD-1]
          Length = 454

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 67/314 (21%), Positives = 105/314 (33%), Gaps = 45/314 (14%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           I++  L    + W+ +  ++  L   T+  Y       L      T  +    T+  L+ 
Sbjct: 84  IMALPLFLYIEEWIDHSSVK--LQPTTIDGYRQ-----LCGGRIRTFFESRGTTVYDLTG 136

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++  F +    Q +   S +R    I S   +L K +    +        K        
Sbjct: 137 EDLNEFYAYLAKQGLKGASQQRYHGLIHSAYSFLMKHQYIDSNPCDFADRPKAEKYRGAY 196

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
            N+ +   L        + E++         + L    GLR SE L +   NI     T+
Sbjct: 197 YNQSELTELF-----RAAKESEIYIP-----VLLAAYYGLRRSEVLGIKWSNIDFGNGTI 246

Query: 189 RIQGK--------------------GDKIRIVPLLPSVRKAIL-------EYYDLCPFDL 221
           RI  K                        RI+PL+  V  A+        E   LC    
Sbjct: 247 RIAHKVVEQKVDGKYRTVGHDKMKTESSNRILPLMKEVAMALRRLKLHQDEQRRLCGNSY 306

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
                  +     G+ L P        +L +  GL      H LRHS A+ LL+NG  ++
Sbjct: 307 VHEYDDYVCVNEIGQLLRPNYVTAKFSELLKENGL-KHIRYHDLRHSCASLLLANGVPMK 365

Query: 282 SIQSILGHFRLSTT 295
            IQ  LGH    TT
Sbjct: 366 EIQEWLGHSNYRTT 379


>gi|227513195|ref|ZP_03943244.1| phage integrase family site specific recombinase [Lactobacillus
           buchneri ATCC 11577]
 gi|227083576|gb|EEI18888.1| phage integrase family site specific recombinase [Lactobacillus
           buchneri ATCC 11577]
          Length = 385

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 55/310 (17%), Positives = 112/310 (36%), Gaps = 47/310 (15%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           ++R L   T  +Y     +++I        KI    IR +    ++  ++     K+   
Sbjct: 77  VQRELKPNTQINYLNIINKYII-------PKIGNFRIRSIGPAALQNLVNDLGETKLAKH 129

Query: 87  SLKRSLSGIK-SFLKYLKKRKITTESNILNMRNLK------KSNSLPRALNEKQALTLVD 139
           +++  +  IK  F K +   ++  E     +   K       +    + +   Q   ++ 
Sbjct: 130 TVQIIVMVIKEGFKKAVYPYQLIKEDPARYIIMPKYHDDERITRKKLKIITMNQYEQILS 189

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------- 191
                               L + +G G+R  E   LT  N+  +  T+ ++        
Sbjct: 190 ITPPSNPFYIP---------LQIAFGTGMRRGEVCGLTWANVDLNGHTVEVKQAMMQEPK 240

Query: 192 --------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-----PL 238
                         R + +  S+   + ++      +     Q               P+
Sbjct: 241 GKFSIVTPKTTSSYRTISIGESLVDLLKQHKKHQIEERLRYGQYYHESNFVCTKENGSPV 300

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-I 297
            P   +    ++++ LG P +   H+LRH+ AT LL NG +++ IQ+ LGH R++TT   
Sbjct: 301 TPNTIKYQCDRIQKELGFPFN--FHSLRHTHATMLLENGANIKDIQARLGHSRIATTMDT 358

Query: 298 YTNVNSKNGG 307
           Y++V  K   
Sbjct: 359 YSHVTHKMQK 368


>gi|15901024|ref|NP_345628.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           TIGR4]
 gi|111658302|ref|ZP_01408992.1| hypothetical protein SpneT_02000531 [Streptococcus pneumoniae
           TIGR4]
 gi|34222992|sp|Q97QP2|XERS_STRPN RecName: Full=Tyrosine recombinase xerS
 gi|14972638|gb|AAK75268.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae TIGR4]
          Length = 356

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 116/326 (35%), Gaps = 51/326 (15%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEE------KITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  +  +F  ++             I +  +  +S  ++ +FI   R     
Sbjct: 33  YSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDMESFILYLRERPLL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKR--------------------KITTESNIL 114
                 Q +   ++ R+LS + S  KYL +                     K   E+   
Sbjct: 93  NANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAA 152

Query: 115 NMRNLKKSNSLPR----ALN--EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
              N+K+   L       L   +++    + N  L + ++ K    R+ AI+ LL   G+
Sbjct: 153 RAENIKQKLFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNK---ERDLAIIALLLASGV 209

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQL 227
           R+SEA++L  +++      + +  KG K   V +    +  +  Y  +            
Sbjct: 210 RLSEAVNLDLRDLNLKMMVIDVTRKGCKRDSVNVAAFAKPYLENYLAIRNQRYKTEKTDT 269

Query: 228 PLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
            LF  +       ++    ++ + +        +  T H LRH+ AT L         + 
Sbjct: 270 ALFLTLYRGVPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVS 327

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWM 310
             LGH     T +YT++ S    + +
Sbjct: 328 HQLGHASTQVTDLYTHIVSDEQKNAL 353


>gi|218559583|ref|YP_002392496.1| Integrase [Escherichia coli S88]
 gi|218366352|emb|CAR04103.1| Integrase [Escherichia coli S88]
          Length = 339

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 67/331 (20%), Positives = 121/331 (36%), Gaps = 59/331 (17%)

Query: 8   EIVSFE--LLKER--QNWLQNLEIERGLSKLTLQSY------ECDTRQFLIFLAFYTEEK 57
           E ++FE   ++E   + WL   E  R LS+L  Q Y        D ++ +  L       
Sbjct: 34  EAIAFESFTMEEVNKKPWLGEKEDRRHLSELIEQWYSLYGQTLADPKRLIAKLRIIC-NG 92

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKI-----------GDRSLK---RSLSGIKSFLKYLK 103
           +      +L+  +   +   R   ++             R++    R+LS +  F    K
Sbjct: 93  LGDPIASELTAGDFTKYREARLKGEVRNEDGTFMSPVKPRTVNLEQRNLSSV--FGTLKK 150

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
               +  + +  +   K + S    L  ++   L+D      S            I  + 
Sbjct: 151 LGHWSAPNPLAGLPTFKIAESELAFLTPEEIKRLLDACADSQSSSL-------LLIAKIC 203

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
              G R SEA +L   + +        + KG K R VP+   + + +             
Sbjct: 204 LATGARWSEAENLQ-SHQVSKYRITYTKTKGKKNRTVPISKDLYEEL------------- 249

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLR 281
               P  RG    P      ++   +  +  GL  P     H LRH+FA+H + NGG++ 
Sbjct: 250 ----PKNRGKLFTPC-----RKAFERAVKRAGLELPEGQCTHVLRHTFASHFMMNGGNIL 300

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            ++ ILGH  +  T IY + +  +  D + +
Sbjct: 301 VLRDILGHADIKMTMIYAHFSPDHLEDAVTK 331


>gi|315221512|ref|ZP_07863432.1| site-specific recombinase, phage integrase family [Streptococcus
           anginosus F0211]
 gi|315189346|gb|EFU23041.1| site-specific recombinase, phage integrase family [Streptococcus
           anginosus F0211]
          Length = 382

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 48/302 (15%), Positives = 110/302 (36%), Gaps = 32/302 (10%)

Query: 36  LQSYECDTR-----QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           L+SY+   +       L  L  +       + + +++ ++I+ FI++         +++ 
Sbjct: 78  LESYKLTVKPQTYEATLSNLRTHIYPVFGNRQLDKITASDIQVFINQLSRYFENFVTIR- 136

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS----LPRALNEKQALTLVDNVLLHTS 146
             S I+   +     ++ T +   ++   ++         + +        +DN  L   
Sbjct: 137 --SIIRRIFQQGILLQLVTNNPARDIILPRRQKKADDNKVKFIAPDDLKAFLDN--LEKK 192

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK------------- 193
              ++       + +LL   GLRI E  +L   +I  D+ST+ +                
Sbjct: 193 QYKRYGLYYEYVLYHLLLSTGLRIGEVCALEWTDIDLDKSTITVNKTYNKGLKAVSTAKT 252

Query: 194 GDKIRIVPLLPSVRKAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
               R + +       +  Y        F+        +F     +  +  + Q  +   
Sbjct: 253 KSANRTISIDKKTVNMLRLYKNRQRQLFFETGARAPSVVFATPTREYFDLAIRQSALDTR 312

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDW 309
            +  G+P   T H  RH+ A+ LL+ G   + +Q  LGH  ++ T  IY++++     + 
Sbjct: 313 CKEAGIPR-FTFHAFRHTHASLLLNAGISYKELQYRLGHANITMTLDIYSHLSRDKEKEA 371

Query: 310 MM 311
           + 
Sbjct: 372 VA 373


>gi|229073564|ref|ZP_04206686.1| Integrase-recombinase [Bacillus cereus F65185]
 gi|228709566|gb|EEL61618.1| Integrase-recombinase [Bacillus cereus F65185]
          Length = 390

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 124/313 (39%), Gaps = 34/313 (10%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-KITIQTIRQ-------LSYTEIRAF 74
           ++++ ++   + T +SY  +   F   +  + EE ++  + ++Q       L    IR +
Sbjct: 75  KDMDEKKNRKEDTKKSYISEILSFCQCMVQHAEEFELDGEEVQQKDSLLKTLQPWHIRKY 134

Query: 75  ISKRRT-------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--NLKKSNSL 125
            S  +              +L +    I+SFLK+L       +     ++  N+ + +  
Sbjct: 135 NSWLKRVENGRNGDTYAVATLAKKTVLIRSFLKHLHVFSYIEKPLHEELQRANVNEQDRP 194

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDD 184
            R L+  + + ++           +     N  IL  L   G RI E  +   ++   D 
Sbjct: 195 NRDLSYDEVMKILGFY-------KERGHLVNYTILLALASTGARIQELCTARVKDLHYDG 247

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGV 242
           +  L++ GKGDK+R + +   + + I E      F   L+   + P+F   RG   N   
Sbjct: 248 KYWLKVTGKGDKVRELFISEHLYQCICEMRLRRGFQTVLDKGDESPVFINQRGNTYNSKT 307

Query: 243 FQRYIRQLRRYLGLPL------STTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTT 295
               +  + +   L          TAHT RH+FA   +  G  DL  +   LGH  + TT
Sbjct: 308 LSNQVTDMIKKTNLEFLLYRENPVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTT 367

Query: 296 QIYTNVNSKNGGD 308
           +IY   + K   +
Sbjct: 368 KIYLEKHMKRKNN 380


>gi|227355962|ref|ZP_03840354.1| integrase [Proteus mirabilis ATCC 29906]
 gi|227163950|gb|EEI48852.1| integrase [Proteus mirabilis ATCC 29906]
          Length = 329

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 95/236 (40%), Gaps = 33/236 (13%)

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R + +  R+    L+  ++    L +      ++ + N+R+ +   S    L+++Q + L
Sbjct: 114 RIKSVAPRTTNLELAYFRAMFNELHRLGEWKDDNPLKNIRSFRTDESEMAFLSDEQIIQL 173

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++      + +          I+ +    G R SEA  LT   +   + T   + KG + 
Sbjct: 174 LEECDKSKAKDLSI-------IVKIALSTGARWSEAEGLTSSQVTPYKITFT-KIKGKRN 225

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL- 256
           R VP+   +   I               +  LF                 R   +  G+ 
Sbjct: 226 RTVPISKVLYDEI------------PKKRGALFTPCYS----------AFRMAMKRTGIE 263

Query: 257 -PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            P   ++H LRH+FA+H + NGG++  +Q ILGH  +  T  Y++ + ++  D + 
Sbjct: 264 LPHRQSSHVLRHTFASHFMMNGGNILVLQRILGHTDIKMTMRYSHFSPEHLEDAVK 319


>gi|222080261|ref|YP_002540125.1| phage integrase family protein [Agrobacterium vitis S4]
 gi|221738906|gb|ACM39685.1| phage integrase family protein [Agrobacterium vitis S4]
          Length = 409

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 63/311 (20%), Positives = 116/311 (37%), Gaps = 21/311 (6%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           ++  F +  E + WL     ERGL++ ++ +   + R FL +             +  LS
Sbjct: 108 DVARFAVCDEYEIWL---REERGLARSSVAALMWEARNFLAWQIDCGSGG-----LAGLS 159

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS--NSL 125
              +  ++   R  K+   SLK     ++S L+YL      T     ++          +
Sbjct: 160 IVAVDRYM-DLRAAKLTRCSLKSVAERLRSLLRYLHITGRVTTDLSGHVIAPTLYAYEGV 218

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P  L   Q   +++        +      R+ AIL  L   GLR  E  +L  ++I    
Sbjct: 219 PSILERDQIAAVLET----ARADKTPAGLRDYAILQFLATYGLRSGEICNLRIEDIDWRT 274

Query: 186 STLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
             + ++  K      +PL+  V +A+L Y        +      +F   R          
Sbjct: 275 EAIHVRHHKTRASTSLPLMEPVGEALLAYLRSGRPVTDARE---IFLRTRAPYRKLDKLY 331

Query: 245 RYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             +R+L R  G+  P     H  RH+ A  +L      + I  +LGH    +T  Y  + 
Sbjct: 332 SVVRRLLRDAGVQPPGKCGPHIFRHARAVEMLRVAVPQKVIGDVLGHRSTGSTAPYLKLA 391

Query: 303 SKNGGDWMMEI 313
           +++     +E+
Sbjct: 392 TEDLRAIALEV 402


>gi|164687373|ref|ZP_02211401.1| hypothetical protein CLOBAR_01014 [Clostridium bartlettii DSM
           16795]
 gi|164603797|gb|EDQ97262.1| hypothetical protein CLOBAR_01014 [Clostridium bartlettii DSM
           16795]
          Length = 193

 Score =  115 bits (288), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 78/205 (38%), Gaps = 18/205 (8%)

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
           +S +  +  ++    +     ++    + DN            + R+ A++ LL   G+R
Sbjct: 2   KSPVRRIHKIRTETVVKETYTDENIEIMRDNCK----------EIRDLAMIDLLNSTGMR 51

Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
           + E + L   +I  ++    + GKGDK R V      +  +  Y          +    L
Sbjct: 52  VGELVRLNISDINFNERECIVLGKGDKQRKVYFDAKTKIHLQSYLKSRD-----DENDAL 106

Query: 230 FRG--IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           F         LN    +  +R L R L +      H  R + AT  +  G  +  +Q +L
Sbjct: 107 FVSLLKPHNRLNISGVEIRMRNLGRRLNINK-VHPHKFRRTLATRAIDKGMPIEQVQQLL 165

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMME 312
           GH ++ TT  Y  VN  N  +   +
Sbjct: 166 GHSKIDTTLQYAMVNQNNVKNSHRK 190


>gi|153814784|ref|ZP_01967452.1| hypothetical protein RUMTOR_00999 [Ruminococcus torques ATCC 27756]
 gi|317500288|ref|ZP_07958515.1| transposase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|145847815|gb|EDK24733.1| hypothetical protein RUMTOR_00999 [Ruminococcus torques ATCC 27756]
 gi|316898331|gb|EFV20375.1| transposase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 420

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 58/365 (15%), Positives = 136/365 (37%), Gaps = 61/365 (16%)

Query: 2   EGNNLPEIVSFEL-LKERQNWLQNLE--------------IERGLS------KLTLQSYE 40
           E + +PE    +L L+E++  +Q+L+              +ER LS        TL +Y+
Sbjct: 46  EADKMPEGKRADLSLREKERKVQSLQMQGITGSNITVIELVERYLSLKTGVKHNTLANYK 105

Query: 41  CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLK 100
                    +    +E+   + +  +  ++ + F+ K +    G  S+      ++   +
Sbjct: 106 -------FVVNVLKKEEFAYKKVDDVKLSDAKIFLIKLQRDGRGYSSIHSIRGVLRPAFQ 158

Query: 101 YLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
                 +  ++        +    L     ++QA++L D        +      +     
Sbjct: 159 MAVDDDLILKNPF----GFELGTVLVNDSQKRQAVSLEDEAKFLEFVKNDPHYNQYYDAF 214

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL----------------- 203
           Y+L+  GLRISE    T +++   +  + +  +  + R +  +                 
Sbjct: 215 YILFKTGLRISEFCGFTVKDLDFKEDIINVNHQLQRTREMKYIIVSTKTTSGTRLLPMEA 274

Query: 204 ---PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP--- 257
               +  + +          +       LF    G+P+    +++Y++  R         
Sbjct: 275 DVKEAFLRILKNRRKPKREPMVDGYGGFLFLDKNGRPMVALHWEKYMQHAREKYNREHLL 334

Query: 258 --LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV---NSKNGGDWMM 311
                T H  RH++ T++ ++G + +++Q ++GH  +S T  IYT+    ++K     + 
Sbjct: 335 QLPPITPHVCRHTYCTNMANSGMNPKTLQYLMGHSDISVTLNIYTHTGYDDAKKELSRLK 394

Query: 312 EIYDQ 316
           E  D+
Sbjct: 395 EARDE 399


>gi|325264103|ref|ZP_08130835.1| transposase [Clostridium sp. D5]
 gi|324030587|gb|EGB91870.1| transposase [Clostridium sp. D5]
          Length = 425

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 108/292 (36%), Gaps = 34/292 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +   +++K+   +I  +  ++ + +  + + + +   ++      +K+      +     
Sbjct: 115 MKLLSDDKLGAASIDSVKLSDAKEWALRMQEKGVAYHTICNGKRSLKAIFYMAVQDDCLR 174

Query: 110 ESNI-LNMRNLKKSNSLPRA-LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     +  +   +++P+  L   Q   L++ +      +   + A+    + +L   G
Sbjct: 175 KNPFDFQINEVINDDTVPKVPLTPAQEKELLEFM------QNDPVYAKYYDEVLILLETG 228

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAIL 211
           LR+SE   LTP ++  ++  + +                       R VP+  +  +A  
Sbjct: 229 LRVSELCGLTPADLNFEKRCVNVDHQLLRSTEDGYYIEAPKTDSGYRQVPMSAAAYEAFQ 288

Query: 212 EYYDLCPFDLNL---NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTA 262
                      +     +  LF    G P     +    + L +         LP   T 
Sbjct: 289 RVLHRRKNGKGVVVDGYKGFLFLNRDGLPKAAVHYDAMFQGLAKKFNKFHAEPLPEVMTP 348

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           HT+RH+F T + + G + +++Q I+GH  +  T   Y +    +  + M  +
Sbjct: 349 HTMRHTFCTRMANAGMNPKALQYIMGHSNIVMTLNYYAHATFHSAQEEMERL 400


>gi|254994002|ref|ZP_05276192.1| integrase/recombinase [Listeria monocytogenes FSL J2-064]
          Length = 128

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 6/132 (4%)

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           GKG+K R VP       AI +Y       ++        L     G PL     +  + +
Sbjct: 1   GKGNKERYVPFGVYAEDAITDYLPERANLMSRYKKSHDALLVNHYGDPLTTRGIRYCLSK 60

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           +     L      H LRH+FAT LL+NG D+R++Q +LGH  LS+TQIYT+V  ++    
Sbjct: 61  IISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH---- 116

Query: 310 MMEIYDQTHPSI 321
           +   Y + HP  
Sbjct: 117 LKATYMKHHPRA 128


>gi|251780787|ref|ZP_04823707.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243085102|gb|EES50992.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 384

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 59/331 (17%), Positives = 117/331 (35%), Gaps = 46/331 (13%)

Query: 11  SFELLKERQNWLQ-NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +  L K    WL+  ++     S+ T + Y     + +I +       I    +  L   
Sbjct: 57  NMSLKKYLNMWLEEYIKT--NYSQRTYEIYLDTVEKHIIPI-------IGNIKLSDLKVV 107

Query: 70  EIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            I  +++  R T+ I   +       + + L    K ++ T +    +   KK+      
Sbjct: 108 HIEKYLNHLRNTKTINGTTANLHFRNLNTALNRAIKLQLLTNNPCTYVEPPKKNKFKGNY 167

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ-NIMDDQST 187
           L  ++   + D+++++      +++     +L L    G R  E   L    +I    +T
Sbjct: 168 LTVEEFKKIYDSMIVN-----NYLNMSFKTLLNLAVETGCRRGEMCGLEWDKDIDLHNNT 222

Query: 188 LRIQ----------------GKGDKIRIVPLLPSVRKAILEY---YDLCPFDLNLNIQLP 228
           +  +                      R +P+   + K + E                   
Sbjct: 223 ITFRRALIRTNSSGWIMGKLKTQSSYRCLPISDFLSKQLKELKKEQMKNKLLFGEEYCKN 282

Query: 229 LFRGIRGK---------PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
           +F GI             + P      +R L +   +      H LRH+ AT LL +G D
Sbjct: 283 IFNGIEYNLVCIQRNGKYMCPTDITDRLRALLKRNEINKKIRWHDLRHTSATLLLESGVD 342

Query: 280 LRSIQSILGHFRLSTTQ-IYTNVNSKNGGDW 309
           ++++Q  LGH  ++TT  IY++V  K   + 
Sbjct: 343 MKTVQERLGHASMNTTSNIYSHVTEKMNREA 373


>gi|255616612|ref|XP_002539765.1| conserved hypothetical protein [Ricinus communis]
 gi|223502581|gb|EEF22619.1| conserved hypothetical protein [Ricinus communis]
          Length = 117

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 44/120 (36%), Positives = 60/120 (50%), Gaps = 5/120 (4%)

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +       +  Y       L    Q   LF   RG+P+    F   I+      GLP   
Sbjct: 1   MGEVAVHWLQRYTTEGRPLLMGGRQSAMLFPNRRGEPMTRQAFWYRIKHYALLAGLPKLP 60

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           + HTLRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V        +  +++Q HP 
Sbjct: 61  SPHTLRHAFATHLLNHGADLRVVQLLLGHADLSTTQIYTHVAQAR----LKSLHEQHHPR 116


>gi|171315564|ref|ZP_02904800.1| integrase family protein [Burkholderia ambifaria MEX-5]
 gi|171099401|gb|EDT44139.1| integrase family protein [Burkholderia ambifaria MEX-5]
          Length = 343

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 61/313 (19%), Positives = 118/313 (37%), Gaps = 43/313 (13%)

Query: 16  KERQNWLQNLEIE-----------RGLSKLTLQSYECDTRQFLIFLAFYTEE-----KIT 59
           K  +NWL+    E           R L +L    Y+   R+                ++ 
Sbjct: 35  KAYENWLRVKAAENPDWSPVRRDSRSLRELVQLWYDRHGRELSSGAGTRDRLFAACVEMG 94

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRN 118
             T+   S     ++ ++R    I   ++ R  + +++    L +  +   E+ +  +R 
Sbjct: 95  EPTVDSFSADVFASYRARRLEAGISASNMNREHATLRAVFNELSRLGLWERENPLGKLRQ 154

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            K        L+++    L+  +    +   +        I  +    G R SEA +LT 
Sbjct: 155 FKVQERELSFLDDESIRELLRELRASRNPGAE-------LIAVVCLSTGARWSEAETLTR 207

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
             + + Q     + K  + R VP+   ++  +L + D                  RG  +
Sbjct: 208 SQVRNGQIQF-ARTKSRRNRAVPIDDRLQHRVLAHADEHG---------------RGVRI 251

Query: 239 NPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
               F    R+     GL  P     H LRH+FA+H + NGG++ ++Q ILGH  L+ T 
Sbjct: 252 FSTAFS-AFREAVERAGLELPAGQLTHVLRHTFASHFMMNGGNILTLQRILGHANLTMTM 310

Query: 297 IYTNVNSKNGGDW 309
            Y +++ ++  + 
Sbjct: 311 RYAHLSPEHLQEA 323


>gi|315608576|ref|ZP_07883560.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
 gi|315249747|gb|EFU29752.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
          Length = 317

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 58/293 (19%), Positives = 114/293 (38%), Gaps = 33/293 (11%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSF 98
           Y    +Q+   +      ++       ++   + A+ +  R   I DR+     + +  F
Sbjct: 12  YRHTLQQWDEAMLENGFNEL------YVTREMVSAWENSLR--NICDRTSYTKHTQLIQF 63

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSL--PRALNEKQALTLVDNVLLHTSHETKWIDA-- 154
           LKY+ +  I         R  K+ +S+  P     ++   +++ +        +      
Sbjct: 64  LKYMCRLGIECFVP----RIPKRPSSMYTPYVFTHEEMSRIMEAIDKSEQKGFRPKSCLI 119

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213
               +  LLY  G+RISEAL++   ++     ++ + + K  K RI+P+ P ++  + +Y
Sbjct: 120 CMPCLFRLLYSTGMRISEALNIKNGDVNFQSDSIFLTKTKNGKERIIPMNPELKVVLSQY 179

Query: 214 YDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLP---LSTTA--HTL 265
                      I  P   LF    GKP        + +++ R  G+     +     H L
Sbjct: 180 LKYRDMMPVEGICKPERHLFVSGIGKPFTATTPYTFFKKILRQCGIAHKGKNQGPRVHDL 239

Query: 266 RHSFATHLLSN----GGDLR----SIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           RH+FA H L      G DL      +  +LGH  +  T+ Y  +  +   + +
Sbjct: 240 RHTFAVHTLQKMATEGVDLYAGLPVLSVLLGHASVRETEWYLRLTREFYPEVI 292


>gi|150389382|ref|YP_001319431.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
 gi|149949244|gb|ABR47772.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
          Length = 366

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 62/335 (18%), Positives = 127/335 (37%), Gaps = 51/335 (15%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N+L+  +  +G S  TL +   D + +  FL      +    T  Q++   I  FI   R
Sbjct: 39  NYLKYQKS-KGRSDNTLLAQARDLKLYWEFL------ETNRYTFDQITPYIIGHFIEFLR 91

Query: 80  TQKIGD-------------RSLKRSLSGIKSFLKYLKKRKITTESNIL--NMRNL----- 119
             + G              +++ R L+ I +   Y+        + IL   ++       
Sbjct: 92  NDEHGKNIIHIKVSSVRAGKTINRILTTIHNLYIYIVNTMEIR-NPILMEEIKRPPNMFK 150

Query: 120 ----------KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
                     K   S+ +     +A+ L+ N    T  E   +  R+  I  ++Y  G R
Sbjct: 151 DLLHHTRSNNKTHRSIFKVKEVNRAVRLITNDEADTFVEN-LVRWRDRLIFKIMYISGAR 209

Query: 170 ISEALSLTPQNIMDDQSTLRI-----QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
           I E L L  + I     T  +          K R + +   + + I  +       ++  
Sbjct: 210 IQEVLDLKIEQIPTPDPTSMVAVLENIKSKGKNRDLYMPMYLLEEIDNFIMEERNQVDT- 268

Query: 225 IQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
           +   +F   + +     L          ++++  G+  +   H LRH+  T+ + +G D+
Sbjct: 269 VNSFIFVSYQTQYLGKKLTYRGIYEVFNRVKKKTGIYFN--FHDLRHTCVTNFVESGLDI 326

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
             +Q I GH  ++TT+ YT+++ K+    + + ++
Sbjct: 327 SVVQKIAGHKHVTTTENYTHLSKKHINKVISKYWN 361


>gi|319937020|ref|ZP_08011430.1| transposon integrase [Coprobacillus sp. 29_1]
 gi|319807956|gb|EFW04535.1| transposon integrase [Coprobacillus sp. 29_1]
          Length = 410

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 60/327 (18%), Positives = 113/327 (34%), Gaps = 66/327 (20%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRS 87
           RG+   T ++Y+            +   +I  Q I  +  T+I+ + +     + +   +
Sbjct: 84  RGIKNNTFENYKY-------MYETFVRNQIGSQFIMSIKKTDIKRYYNSLVDDRHLKPAT 136

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRN-------LKKSNSLPRALNEKQALTLVDN 140
           +    + +    +          +   N+          K      RAL + +    ++ 
Sbjct: 137 IDSIHTVLHQVFEMAVDDDYIRSNPTDNVLRELKKSHCFKTEKR--RALTKPEQELFLE- 193

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK------- 193
            L +T     W       I  ++ G GLR+ E   L   +I  ++  + +          
Sbjct: 194 YLKNTPEAQYW-----YPIFAVMVGTGLRVGELTGLRWCDIDLEEGIIDVNHTLVYYDHR 248

Query: 194 -----------------GDKIRIVPLLPSVRKAIL------EYYDLCPFDLNLNIQLPLF 230
                               +R VP+L  V++A L      E   L            +F
Sbjct: 249 TEGSKKGCYFNVNTTKTPAGMRQVPMLEFVKEAFLMEKERQELLGLHCEATVDGYTDFVF 308

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLG------------LPLSTTAHTLRHSFATHLLSNGG 278
               G+P +     + IR++ R               L    + H+LRH+F T +   G 
Sbjct: 309 VNRFGQPQHQATLNKAIRRIIRNCNDKQFLESENPEVLLPHFSCHSLRHTFTTRMCEAGV 368

Query: 279 DLRSIQSILGHFRLSTT-QIYTNVNSK 304
           +++ IQ  LGH  +STT  IYT+V  +
Sbjct: 369 NVKVIQDALGHKDVSTTLNIYTDVTKE 395


>gi|283786566|ref|YP_003366431.1| fimbrial regulatory protein FimB [Citrobacter rodentium ICC168]
 gi|282950020|emb|CBG89649.1| fimbrial regulatory protein FimB [Citrobacter rodentium ICC168]
          Length = 201

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 68/173 (39%), Gaps = 8/173 (4%)

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L + +  +L+       +  T    ARN  +  L +  G R SE   L   +I      
Sbjct: 12  FLTQNEIESLL------KAANTGPHAARNYCLTLLCFIHGFRASEICRLQISDIDLKAKC 65

Query: 188 LRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           + I+  K       PLL    K +  + ++       + +  LF   +G PL+   F + 
Sbjct: 66  IYIRRLKKGFSTTHPLLGEEIKTLRNWLNIRISWPCSDSE-WLFLSRKGNPLSRQQFYQI 124

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           I       GLPL    H LRHS    L + G D R IQ  LGH  +  T  YT
Sbjct: 125 ISAAGDQAGLPLEIHPHMLRHSCGFALANRGVDTRLIQDYLGHRNIRHTVWYT 177


>gi|210623381|ref|ZP_03293778.1| hypothetical protein CLOHIR_01728 [Clostridium hiranonis DSM 13275]
 gi|210153642|gb|EEA84648.1| hypothetical protein CLOHIR_01728 [Clostridium hiranonis DSM 13275]
          Length = 376

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 48/318 (15%), Positives = 109/318 (34%), Gaps = 42/318 (13%)

Query: 14  LLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
             + R+ +L + +  +  L   T  +Y+    +          + + I  ++ +    I+
Sbjct: 72  FAEAREKFLSEYVAND--LKDSTYTNYKQKLNK-------PQIKVLEIYLLKDIRAKHIQ 122

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRALN 130
             I            +K +L  I S   +  + ++  ++    +    K        AL 
Sbjct: 123 NIIDYMALNGFSKNMVKNTLRTISSLFNFCIRAELIKDNPCDKVVLPSKLTQPERKVALT 182

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            K+   ++           ++ +      L L    G+R  E   L  +N+  D+  + +
Sbjct: 183 NKEVKRIL----------NRFKNTHWYLSLMLPLYTGMRRGECCGLRWKNVDLDKGIIYV 232

Query: 191 Q----------------GKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGI 233
           +                     IR + +   + +A+    +     ++  N    +    
Sbjct: 233 RENLTQDKGKKWIISTPKTKSSIRTINIPLPLLEALKWQLERNKSNNVATNSDTHVLVRD 292

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            G  +     +   R +   LG+  +   H LRH++AT L+  G +++ +  +LGH  + 
Sbjct: 293 NGSIITNDTLKYLSRVINYDLGIKFN--YHNLRHTYATLLIEKGANIKDVSVLLGHASIK 350

Query: 294 TTQ-IYTNVNSKNGGDWM 310
           TT  IY N         +
Sbjct: 351 TTMDIYVNNTDNMRDKTL 368


>gi|260885894|ref|ZP_05736094.2| integrase [Prevotella tannerae ATCC 51259]
 gi|260851415|gb|EEX71284.1| integrase [Prevotella tannerae ATCC 51259]
          Length = 471

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 58/291 (19%), Positives = 109/291 (37%), Gaps = 27/291 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K TL+ Y    +    FL   Y  + I ++ +     ++   F+  R  +     ++  
Sbjct: 190 AKGTLEKYRIVYKHLQEFLDIRYHVKDIALKELTPAFISDFEMFL--RTDKHCCTNTVWL 247

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +  +++ +      +  T         +KK  +    L +++   L+D  L +   E  
Sbjct: 248 YVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKEEIRLLMDGKLKNAKQE-- 304

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRI-QGKGDKIRIVPLLPSV 206
                   +       GL  S+  +LT +N     D+   + I + K   +  + LL   
Sbjct: 305 ----LYRDLYLFCAFTGLSFSDMRNLTEENIRTYFDEHEWININRQKTGVVSNIRLLDIA 360

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            + I +Y  LC           +F          G     IR + +  G+    T H  R
Sbjct: 361 NRIIGKYRGLC-------ENGKIFPVPHYNTCLAG-----IRAVAKRCGITKHITWHQSR 408

Query: 267 HSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           H+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +     M  +  +
Sbjct: 409 HTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMKNLAAR 459


>gi|312913689|dbj|BAJ37663.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
          Length = 336

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 99/257 (38%), Gaps = 32/257 (12%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTESNIL 114
            ++    + +L+   +  + + R    +   ++ R    + S  + L    +   E+   
Sbjct: 97  REMGEPRVYELTRNFLMKYRASRLHDGVSAGTVNRDFCTMSSMFRLLIDMEEFHHENPFH 156

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            +R L+  N+    L+E++   L+             +   +  ++ L    G R  EA 
Sbjct: 157 KVRKLRLENTEMSFLSEEEIRDLLMA-----------LTGDDRRVVVLCLNTGARWGEAS 205

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +L  ++++ ++ T  ++ K    R VP+   +   IL       FD N      + R ++
Sbjct: 206 NLKAEHVISNRVTF-VKTKTGPARTVPISQEIADYILTRKSGKLFDTNYERVRDVLRKVK 264

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
                                LP     H LRH+FATH + NGG++ ++Q ILGH  +  
Sbjct: 265 PD-------------------LPRGQALHVLRHTFATHFMINGGNIITLQRILGHTTIEQ 305

Query: 295 TQIYTNVNSKNGGDWMM 311
           T  Y +       D + 
Sbjct: 306 TMTYAHFAPDYLSDAIR 322


>gi|197250677|ref|YP_002147601.1| integrase [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|205360077|ref|ZP_02834436.2| integrase [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|197214380|gb|ACH51777.1| integrase [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|205341129|gb|EDZ27893.1| integrase [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
          Length = 336

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 99/257 (38%), Gaps = 32/257 (12%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTESNIL 114
            ++    + +L+   +  + + R    +   ++ R    + S  + L    +   E+   
Sbjct: 97  REMGEPRVYELTRNFLMKYRASRLHDGVSAGTVNRDFCTMSSMFRLLIDMEEFHHENPFH 156

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            +R L+  N+    L+E++   L+             +   +  ++ L    G R  EA 
Sbjct: 157 KVRKLRLENTEMSFLSEEEIRDLLMA-----------LTGDDRRVVVLCLNTGARWGEAS 205

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +L  ++++ ++ T  ++ K    R VP+   +   IL       FD N      + R ++
Sbjct: 206 NLKAEHVISNRVTF-VKTKTGPARTVPISQEIADYILTRKSGKLFDTNYERVRDVLRKVK 264

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
                                LP     H LRH+FATH + NGG++ ++Q ILGH  +  
Sbjct: 265 PD-------------------LPRGQALHVLRHTFATHFMINGGNIITLQRILGHTTIEQ 305

Query: 295 TQIYTNVNSKNGGDWMM 311
           T  Y +       D + 
Sbjct: 306 TMTYAHFAPDYLSDAIR 322


>gi|170761597|ref|YP_001788677.1| phage integrase family site specific recombinase [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169408586|gb|ACA56997.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 199

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 82/190 (43%), Gaps = 10/190 (5%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L +++A+ L + ++            R+ A+  + Y CGLR SE   +   +   D+ 
Sbjct: 10  KYLTQQEAIRLFNAIIFS----DNSHAVRDLALFRVAYRCGLRASEISLIKLDDYNVDKG 65

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            L  +  KG     + L  + +KA+  Y        N      LF+  +  P++      
Sbjct: 66  DLYCKRLKGSNNNTIRLDVTTKKALDTYIRDYKISCNSGT---LFKSQKNNPISRQTLDY 122

Query: 246 YIRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            +++  +   +   +    HTL+H+ A HL  +  D++ +Q  LGH  +S T+IY    +
Sbjct: 123 LMKKYCKIANISDKSKHHFHTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEIYFQFTT 182

Query: 304 KNGGDWMMEI 313
           K      M++
Sbjct: 183 KQQEKMYMKL 192


>gi|326790277|ref|YP_004308098.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326541041|gb|ADZ82900.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 311

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 64/316 (20%), Positives = 122/316 (38%), Gaps = 27/316 (8%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +   ++ +N  I R LS  T++ Y+         L  Y  E      + +++   +R 
Sbjct: 16  LKELYDDFEKNCRI-RNLSSETIKYYQN----CYHILCNYKPEVY----LDEINNEFVRD 66

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +I   + Q +   S+   L G++S   +     +      L ++ LK    +     E+Q
Sbjct: 67  YILYLQ-QTMKPTSVNCQLRGLRSICNHAFDLGLM---PKLIIKQLKYDKEVRETYTEEQ 122

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG- 192
              L+    L    +  +++ RN  I+      G RI   L +  +++      + ++  
Sbjct: 123 IKKLIKKPNLK---KCGFVEYRNWVIVSWFIATGNRIGTVLEIKIKDVDLANQLVVLRHN 179

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K     I+PL  S+ K + EY               LF  + G  L+    Q  I++  R
Sbjct: 180 KNRNQNIIPLCSSICKILSEYLQYR----KGEADDYLFCAMDGSRLSKRSLQCSIQKYNR 235

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+ +  + H  R  FA   + NG D+ ++Q +     L   + Y N+ + +  +    
Sbjct: 236 DRGVSI-ASCHAFRRYFAKQCVLNGVDIFTLQKLGNWKSLDVVKNYINIYATDIKN---- 290

Query: 313 IYDQTHPSITQKDKKN 328
            YD  +P  T     N
Sbjct: 291 -YDSFNPFQTLYSDNN 305


>gi|323693003|ref|ZP_08107224.1| hypothetical protein HMPREF9475_02087 [Clostridium symbiosum
           WAL-14673]
 gi|323503004|gb|EGB18845.1| hypothetical protein HMPREF9475_02087 [Clostridium symbiosum
           WAL-14673]
          Length = 299

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 66/306 (21%), Positives = 114/306 (37%), Gaps = 34/306 (11%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-----LSYTE 70
           +  Q + + L  E   +K T+  Y  D R F  F+      +    +        ++  +
Sbjct: 12  EALQRYKEYLIKEER-AKATVDKYLHDVRVFEAFVRREQSCEADWNSAADTIRKAVTKEK 70

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL----P 126
           +  F     T     RS+   L+ + SF  ++             ++ +K    +     
Sbjct: 71  VIEFKRNLLTI-YHVRSVNSMLAALNSFFSFMDWTDF-------RVKPVKIQRQMFCEEQ 122

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R LN+K+   LV         +          IL  L G GLRISE  S+T +++   + 
Sbjct: 123 RELNKKEYYRLVRAAQNMGKRQLS-------LILQTLCGLGLRISELKSVTVESVRKGKL 175

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            +  +GK    RIV +   ++K +L Y               +F    GK ++     R 
Sbjct: 176 CIYNKGKN---RIVFIGSKLQKQLLLYIRERKLKTGE-----VFITKTGKGVDRSNVWRE 227

Query: 247 IRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +++L     +       H LRH FA        D+  +  I+GH  + TT+IYT  + K 
Sbjct: 228 MKKLCGEADVEWQKIFPHNLRHLFARTFYELKKDVVKLADIMGHSSIETTRIYTATSGKE 287

Query: 306 GGDWMM 311
               M 
Sbjct: 288 YRRQME 293


>gi|307728055|ref|YP_003911268.1| integrase family protein [Burkholderia sp. CCGE1003]
 gi|307588580|gb|ADN61977.1| integrase family protein [Burkholderia sp. CCGE1003]
          Length = 389

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 118/359 (32%), Gaps = 54/359 (15%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P+I +   ++  + WL         S  TL+SY  +  + L++      + ++  ++ + 
Sbjct: 37  PQIAADTDVEAVRLWLAEYAG----SPHTLRSYRKEAVRLLLWATQALGKPLS--SLTRE 90

Query: 67  SYTEIRAFISK------------------RRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT 108
            +     F++                        + +RS  ++L  +   L YL      
Sbjct: 91  DFLLYEQFLAAPAGDWADPARPRRGGARRLFDGPLSERSRHQALGIVSGLLSYLVSAGYL 150

Query: 109 TESNILNMRN--------LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
             + +   R          +    L  AL     L  V+     T+ + +  +     ++
Sbjct: 151 AGNPLALRRRTGAAARRTPRVERYLDHAL-WDHVLASVEQWPRLTARDHQHYERS-RWLI 208

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP-------LLPSVRKAILEY 213
            LLYG GLR+SEA      +    +    +   G              +    R  +   
Sbjct: 209 RLLYGTGLRVSEAAHAKAADFYQRRGRWWLHVVGKGGGEGEVPVSAALMADLARYRVFHG 268

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL----------GLP--LSTT 261
               P        +    G   + L P      ++++ R            G       +
Sbjct: 269 LAPTPAGSETAAAVMTVSGDPHRHLTPAAVYLIVKEVFRRAADMLGTGDVAGAETLRRAS 328

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGDWMMEIYDQTHP 319
            H LRHS A+H    G DLR IQ  + H  + TT IY +  + +   + + E  D   P
Sbjct: 329 THWLRHSAASHQADAGTDLRFIQRNMRHASIQTTGIYLHAEDDQRHAETVQEQVDTARP 387


>gi|160960276|emb|CAP45546.1| integrase [Streptococcus pneumoniae]
          Length = 405

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 107/295 (36%), Gaps = 35/295 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +    ++K+  ++I  +  ++ + +  +        +++      +K+      +     
Sbjct: 110 MDILKKDKLGARSIDSIKPSDAKEWAIRMSENGYAYQTINNYKRSLKASFYIAIQDDCVR 169

Query: 110 ESNI-LNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     ++ +   +++P+  L  +Q   L+         +     ++N   + +L   G
Sbjct: 170 KNPFDFQLKAVLDDDTVPKTVLTGEQEEKLL------AFAKADKTYSKNYDEILILLKTG 223

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAIL 211
           LRISE   LT  ++  +   + I                       R VP++    +A  
Sbjct: 224 LRISEFGGLTLPDLDFENRLVNIDHQLLRDTEIGYYIETPKTKSGERQVPMVEEAYQAFK 283

Query: 212 EYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTA 262
                   D  + I      LF   +  P     +   ++ L +         LP   T 
Sbjct: 284 RVLANRKNDKRVEIDGYSDFLFLNRKNYPKVASDYNGMMKGLVKKYNKYNEDKLP-HITP 342

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQ 316
           H+LRH+F T+  + G + +++Q I+GH  ++ T   Y +    +    M  +  +
Sbjct: 343 HSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMSEMKRLNKE 397


>gi|54023527|ref|YP_117769.1| putative phage integrase [Nocardia farcinica IFM 10152]
 gi|54015035|dbj|BAD56405.1| putative phage integrase [Nocardia farcinica IFM 10152]
          Length = 290

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 53/280 (18%), Positives = 97/280 (34%), Gaps = 26/280 (9%)

Query: 35  TLQSYECDTR---------QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           TL++Y              +           +I       ++  ++ ++  +   Q    
Sbjct: 12  TLEAYALHMAAAGLPPTTIRLRCKHLERIAREIGRAGPWTITADQLVSWAGQ---QNWAT 68

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            + +   S    F ++     +T  + +     +  + + PR   ++     +       
Sbjct: 69  ETRRSYRSSCMKFWRWGIASGLTDTNPVEEWPRIPGAAANPRPAPDRVYRAAL------- 121

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQGKGDKIRIVPLL 203
                  D R   +L L   CGLR +E   +  ++     D   L + GKG K R +P+ 
Sbjct: 122 ----AAADPRTRIMLRLAAECGLRRAEVAQVHIRDLVEDFDGWVLIVHGKGGKDRRLPIP 177

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TA 262
             +   I           +   +  LF G     L+         +    +       T 
Sbjct: 178 DDIAALIRAGARGHSPHDHTPSRGWLFPGQDHGHLSAAHVGVLCSRALAKVQTSGQVWTM 237

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           H LRH FAT       D+R++Q  LGH  ++TTQIYT V+
Sbjct: 238 HKLRHRFATTAYRATRDIRAVQEALGHSSVATTQIYTAVD 277


>gi|291546700|emb|CBL19808.1| Site-specific recombinase XerC [Ruminococcus sp. SR1/5]
          Length = 380

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 59/300 (19%), Positives = 113/300 (37%), Gaps = 37/300 (12%)

Query: 33  KLTLQSYECDTRQFLI-FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
             T   Y     +++   L  Y  E ++   + Q SY  I         + +  ++++  
Sbjct: 86  PSTFVKYTTILEKYIKPDLGQYFSEAVSEILVEQFSYRLI-------HERGLSPKTVRDI 138

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           LS + S L Y  K+    +   +++   ++     R L  ++     +  LL      K+
Sbjct: 139 LSVLHSILNYTTKQNPLAK--PVDIVYPRQDRKEMRVLTCEEQKRFTE-YLLQDMDPCKF 195

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
                   + L    GLRI E  +L  ++I  +   + ++    +++ +      R  I+
Sbjct: 196 G-------VLLALLTGLRIGEVCALKWEDISLENKVIFVRHTMQRLKNLNPASEERTRII 248

Query: 212 -----------------EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
                            +   LC      +++  +  G  G  L P   Q  +RQ  +  
Sbjct: 249 TGVPKSGRSVRIIPMNQDIEKLCNKWRADDLEAYVLTGKAGYFLEPRTLQYRMRQYTKDC 308

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
            L  +   HTLRHSFAT  +  G ++RS+  ILGH     T + Y + +       M ++
Sbjct: 309 NL-KNVHFHTLRHSFATRCVEAGFEIRSLSEILGHSSTRITLECYVHSSMNLKRKNMEKL 367


>gi|229186763|ref|ZP_04313920.1| Integrase-recombinase [Bacillus cereus BGSC 6E1]
 gi|228596698|gb|EEK54361.1| Integrase-recombinase [Bacillus cereus BGSC 6E1]
          Length = 390

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 63/307 (20%), Positives = 113/307 (36%), Gaps = 34/307 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEE--------KITIQTIRQLSYTEIRAFISKRRT 80
           +   + T +SY  +   F   +  + EE        +     ++ +    IR +    + 
Sbjct: 81  KNRKEDTKKSYVSEILSFCQCMVQHAEEFELNGEEVQQNDSLLKTIQPWHIRKYNVWLKQ 140

Query: 81  -------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--NLKKSNSLPRALNE 131
                        +L +    I+SFLK+L       +     ++  N+ + +   R L+ 
Sbjct: 141 VENGRNGDTYAVATLAKKTVLIRSFLKHLHVFSYIEKPLHEELQRSNVNEQDRPNRDLSY 200

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRI 190
            + + ++                 N  IL  L   G RI E  +   ++   D +  L++
Sbjct: 201 DEVMKILGFYKEQG-------HLVNYTILLALASTGARIQELCTARVKDLHYDGKHWLKV 253

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            GKG K+R + +   + + I E      F   L+   + PLF   RG   N       + 
Sbjct: 254 IGKGSKVRELFISEHLYECICEMRRRRGFQTVLDRGDESPLFVNQRGNFYNSKTLSNQVT 313

Query: 249 QLRRYLGLPL------STTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTNV 301
            + +   L          TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   
Sbjct: 314 DMIKKTNLEFLQYRENPVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEK 373

Query: 302 NSKNGGD 308
           + K   +
Sbjct: 374 HMKRKNN 380


>gi|265753035|ref|ZP_06088604.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
 gi|263236221|gb|EEZ21716.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
          Length = 411

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/291 (19%), Positives = 106/291 (36%), Gaps = 27/291 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K TL  Y    +    FL   Y  + I ++ +     ++   F+  R  +     ++  
Sbjct: 130 AKATLSKYLVVYKHLQEFLNIRYHVKDIALKELTPAFISDFEMFL--RTDKHCCTNTVWL 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +  +++ +      +  T         +KK  +    L +++   L+D  L +   E  
Sbjct: 188 YVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRGFLTKEEIRMLMDGKLKNAKQE-- 244

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRI-QGKGDKIRIVPLLPSV 206
                   +       GL  S+  +L  +N     D+   + I + K      + LL   
Sbjct: 245 ----LYRDLYLFCAFTGLSFSDMRNLREENVRTYFDNHEWININRQKTGVESNIRLLDLP 300

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           RK I +Y  LC           +F                IR + +  G+    T H  R
Sbjct: 301 RKIIEKYRGLC-------GDGRIFPVPHYM-----TCLYGIRAVAKRCGITKHLTWHQSR 348

Query: 267 HSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           H+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +     M  +  +
Sbjct: 349 HTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMENLVAR 399


>gi|152985240|ref|YP_001350479.1| phage integrase family site specific recombinase [Pseudomonas
           aeruginosa PA7]
 gi|150960398|gb|ABR82423.1| site-specific recombinase, phage integrase family [Pseudomonas
           aeruginosa PA7]
          Length = 404

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/282 (14%), Positives = 99/282 (35%), Gaps = 35/282 (12%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           +I  + + +++  ++       +     D +  R ++ ++  L    +     +  +  +
Sbjct: 129 EIMSKRLTEITQRDLETLRISWQAAGNTDSTANRKMASLRGALSRAVEWGFLDDHPMARL 188

Query: 117 RNLKKSNS-LPRALNEKQALTLVDNVLLHTSHETKWIDARNSA----------------- 158
           + +K   +   R L   +   L   +           D+ N                   
Sbjct: 189 KQIKTDRAGRVRYLLPDEEKRLRQAMEDRQESIRTDRDSANQWRAERKKERLADLREVLF 248

Query: 159 ------ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKA 209
                 ++ L    G+R  E  +LT  +I      + ++G   K  + R +PL     + 
Sbjct: 249 VDHLKPLVLLSLNTGMRRGEVFNLTWADIDLTNKLVTVEGEGAKSGQTRHIPLNKEALET 308

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +  +        +      +F G  G+ L+    ++    L +   +      H LRH+F
Sbjct: 309 LKGW-----RKQHPRNTGYVFPGKDGERLD--NVKKSWEGLLKLANVT-GFRWHDLRHTF 360

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           A+ L+  G  L +++ +LGH  ++ T  Y ++   +    + 
Sbjct: 361 ASKLVMAGVPLNTVRELLGHSDITMTLRYAHLAPDSKAAAVE 402


>gi|330998383|ref|ZP_08322207.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329568489|gb|EGG50294.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 391

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 54/291 (18%), Positives = 101/291 (34%), Gaps = 33/291 (11%)

Query: 41  CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-------QKIGDRSLKRSLS 93
            D        A  +E       + ++      AF+   +T       + +  ++      
Sbjct: 118 HDIHAIDRLCAILSEMNCGDTKVNEIGKDFCIAFVEYLKTGYKTAKGENLKPKTAFNRQC 177

Query: 94  GIKSFLKYLKKRKITTESNILNM---RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
              + L    +  I   + +  +      K S      L   +   L+     +   +  
Sbjct: 178 TFVTALNVAMREGIIPTNPMNLLSHHERAKASKGKRDYLTIDEVKRLIATPCKNNMIKNA 237

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTL-RIQGKGDKIRIVPLLPSVR 207
           ++ A N         CGLR+ +   L   +    +D+  L  I  K  K   +PL    R
Sbjct: 238 YLFACN---------CGLRLGDVRKLKWGDITQDNDRWILSVIMNKSGKPIHIPLGVQAR 288

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + I    D    D    +   L                 ++      G+  S T HT RH
Sbjct: 289 RWIPGCEDSGKHDTGSLVFEHLP--------GDSHINDILKIWAADAGIAKSVTYHTARH 340

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW---MMEIYD 315
           +FAT LL+ G DL ++  +LGH ++  TQIY  + ++   +    + +++D
Sbjct: 341 TFATMLLTLGADLYTVSKLLGHSQIKNTQIYAEIINRRKDEAVNLIDKVFD 391


>gi|294637852|ref|ZP_06716122.1| type 1 fimbriae regulatory protein FimE [Edwardsiella tarda ATCC
           23685]
 gi|291088970|gb|EFE21531.1| type 1 fimbriae regulatory protein FimE [Edwardsiella tarda ATCC
           23685]
          Length = 185

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 66/162 (40%), Gaps = 1/162 (0%)

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKI 197
           +   L  S       AR+  +LY++Y  GLR+SE L++T  ++  +   + I+  K    
Sbjct: 10  EWKKLIGSIPDTPEYARDRCLLYMMYMHGLRVSELLNMTMSSLDLESGEVYIRRLKNGLS 69

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
              P+     K++  +       LN      LF   R   L+       +R+      LP
Sbjct: 70  TTHPIQDEEGKSLAAWLQRRHEVLNGVSYPWLFISKRKTRLSRQQVYALVRRYGESANLP 129

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           +    H LRH+    L   G D R IQ  LGH  +  T  YT
Sbjct: 130 IRLHPHVLRHACGYALADQGIDTRLIQDYLGHRNIRHTVHYT 171


>gi|301308314|ref|ZP_07214268.1| integrase [Bacteroides sp. 20_3]
 gi|300833784|gb|EFK64400.1| integrase [Bacteroides sp. 20_3]
          Length = 409

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 119/277 (42%), Gaps = 24/277 (8%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
                +F+     Y  + +    + +    + +AF+++   +     +++  L+ +K   
Sbjct: 141 RLTLGEFIE--TKYKVKDLAFGQLTEQFIHDYQAFVTE--EKGYAIDTVRHHLAILKKIC 196

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           +   K+  + + +  +    ++S   PRAL+ +    + D  +   S+    I AR+  +
Sbjct: 197 RIAYKKGYSEKCHFQHFALPRQSERTPRALSRESFERIRDVEI--PSYRKTHILARD--L 252

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
                  G+  ++ +S+T +N+  D +    L+ + K ++ R    L     A+LE Y  
Sbjct: 253 FLFACYTGVSYADVVSITDENLYTDDNGSLWLKYRRKKNEHRASVKLLPEALALLERYKD 312

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LS 275
              +        LF  I    +     +R+++ L    G+  +   H  RHSFA+ + L 
Sbjct: 313 ETRET-------LFPIIHHPNM-----KRHMKALAALAGIKDNLCYHQARHSFASLITLE 360

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G  + +I  +LGH  +S+TQ+Y  V+ K   + M +
Sbjct: 361 AGVPIETISRMLGHSDISSTQVYARVSPKKLFEDMDK 397


>gi|114567775|ref|YP_754929.1| phage integrase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338710|gb|ABI69558.1| phage integrase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 392

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/313 (17%), Positives = 117/313 (37%), Gaps = 42/313 (13%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK---IGDR 86
            L   T++SY       +I      +    +  ++     +  A +SK RT+    +   
Sbjct: 82  NLQPKTIRSYTSTINNHIIPHLGRHK----LNNLKAAHIADYYALMSKSRTEGGAGLSPT 137

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++      +   LK+   +    ++ +  ++  +K+    + L+ +QA  L+        
Sbjct: 138 TVLYHHRILHQALKHAVNQDYLKQNPVAKVQPPRKNRPDIKVLSVEQARYLI-------- 189

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--------------- 191
              ++ + +    ++L    G+R +E  +L  QN+  D  TL +                
Sbjct: 190 --ARYSEEQIYLPVFLALMTGMREAEIAALRWQNVDFDNRTLSVTNALQRQENRLELKEP 247

Query: 192 GKGDKIRIVPLLPSVRKAI-----LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
                 R +P+   V   +      +           + +  +     GKP +P    + 
Sbjct: 248 KTKKSRRSIPVPEQVVVVLKKEKERQDCYREILGEGYDCRGFVCAWEDGKPYDPEWIGKQ 307

Query: 247 I-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN-- 302
             + +     +P     H LRH+ AT LLS   +L+ IQ  LGH  ++TT  IY++V   
Sbjct: 308 WAKLVASDDKIPNGVRFHDLRHTHATILLSQNINLKVIQDRLGHESIATTGDIYSHVTPG 367

Query: 303 -SKNGGDWMMEIY 314
             +   D +  ++
Sbjct: 368 IQQVAADVLENLF 380


>gi|325523725|gb|EGD01985.1| integrase family protein [Burkholderia sp. TJI49]
          Length = 318

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 66/325 (20%), Positives = 114/325 (35%), Gaps = 49/325 (15%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R LS LT +    D   +  FL   T  +  +  +R     + R F     +  +  RS 
Sbjct: 2   RALSSLTTE----DAVAYRAFLRRPTPHERWVGPVRPRGAPDWRPF-----SGALSARSA 52

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
             +LS + +  ++L +++    +    ++   +      AL+   A T  + +L+    +
Sbjct: 53  AYALSVLGALFRWLIEQRYLLANPFAGVKV--RDTRGATALDTSHAFTEGEWLLVRAIAD 110

Query: 149 -----------------TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TL 188
                            T     R   IL   Y  GLR SE +  T   I  D      L
Sbjct: 111 GLEFRKPVSPAAPASGWTPAAAQRLRFILDFGYATGLRASELVGATLGGIETDAHGDAWL 170

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGK---PLNPGV 242
           ++ GKG K   V L P  R A+  Y       +         PL   +       +    
Sbjct: 171 KVIGKGSKAARVALPPLARTALDRYLVARRLPVTPARWRPDTPLIPSLAEDGAAAITSVR 230

Query: 243 FQRYI-RQLRRYLGLP-----------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             + + R   +   L               + H +RH+ ATH L+ G +L +++  L H 
Sbjct: 231 LWKVMQRFFAQTAELVDAEHPALAQKLRQASPHWMRHTHATHALARGAELTTVRDNLRHA 290

Query: 291 RLSTTQIYTNVNSKNGGDWMMEIYD 315
            +STT IY + +       +   + 
Sbjct: 291 SISTTSIYLHGDDVKRARQLSNAFA 315


>gi|320012999|gb|ADW07848.1| integrase family protein [Streptomyces flavogriseus ATCC 33331]
 gi|320013124|gb|ADW07972.1| integrase family protein [Streptomyces flavogriseus ATCC 33331]
          Length = 357

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/326 (17%), Positives = 119/326 (36%), Gaps = 38/326 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WLQ +  + G +  T+ +Y     ++L        + +T       +   I  ++ +  +
Sbjct: 22  WLQ-VWSDLGRAPRTIDAYARGLAEYLEMCERENVDPLTA------NRAHIAVYVRELTS 74

Query: 81  Q---------------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS- 124
           +                + + ++++ L  ++ F  +L +      + +   R        
Sbjct: 75  RPSRRGANVVSIDSGSGLANATIQQRLVPVRLFYDFLMEDGQRDSNPVGRGRYTPGRRHR 134

Query: 125 -------LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
                  +PR L +   +      L            RN  +L L Y   LR  E  SL 
Sbjct: 135 GGHERGLVPR-LTKMPWIPAEQQWL-DILAVAAAEPVRNRVMLALAYDAALRREELCSLR 192

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPS-VRKAILEYYDLCPFDLNLNIQLPLFRG---- 232
             ++     TLR++ +  K R+  ++P      +L    L         + PLF      
Sbjct: 193 TDDLDPAHRTLRVRAETTKNRLERVVPYSAPTGVLLSGYLAHRATVSRARGPLFLSESRR 252

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
              +PL+   + + +R++     +P   + HT RH   T L   G +L +I +  GH   
Sbjct: 253 NHAQPLSLWTWSKVVRRIALAADVPR-FSTHTTRHLCLTDLARMGWELHAIATFAGHRHT 311

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTH 318
            +T  Y +++ ++  D +    +Q H
Sbjct: 312 DSTLTYIHLSGRDLADKLSRGMEQIH 337


>gi|228470638|ref|ZP_04055494.1| integrase [Porphyromonas uenonis 60-3]
 gi|288801873|ref|ZP_06407315.1| integrase [Prevotella melaninogenica D18]
 gi|299143044|ref|ZP_07036165.1| integrase [Prevotella oris C735]
 gi|228307646|gb|EEK16625.1| integrase [Porphyromonas uenonis 60-3]
 gi|288335915|gb|EFC74348.1| integrase [Prevotella melaninogenica D18]
 gi|298575495|gb|EFI47380.1| integrase [Prevotella oris C735]
          Length = 417

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/292 (19%), Positives = 110/292 (37%), Gaps = 24/292 (8%)

Query: 40  ECDTRQFLIFLAF--------YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           E   +  L+F           Y  E I +Q        ++  + +K +  K+        
Sbjct: 132 ERRLKCLLLFHKHLANFVRYRYRVEDIPVQKADIAFIKDLEDYFAKEKGFKLNTS--AGY 189

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           LS + S LK L KR I      +N  +++     PR +  ++   +          + + 
Sbjct: 190 LSMLASLLKDLHKRHIIDTYPFIN-HSIRWEVGTPRYITREEVGLI----AALGEDKLQG 244

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRK 208
            +  +  +       GL  ++   LT Q++  +     I+    K   +  +PLLP    
Sbjct: 245 YEKVSRDMFLFSCLTGLSYTDVYHLTEQHVFHEAGMTWIRKPRIKTGNVCHIPLLPEATA 304

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            I  Y  +                I G          +++++ R  G+  + T H  RH+
Sbjct: 305 IIERYRGIHTRAFRHEPPKGYLLPIPGC----DTVNIHLKKIARLCGIQKTLTYHMARHT 360

Query: 269 FATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ-TH 318
           FA+ + LS G  + S+  +LGH ++ TTQ+Y   + +     + +I  Q  H
Sbjct: 361 FASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFLDIEKILPQLAH 412


>gi|225376009|ref|ZP_03753230.1| hypothetical protein ROSEINA2194_01646 [Roseburia inulinivorans DSM
           16841]
 gi|225212164|gb|EEG94518.1| hypothetical protein ROSEINA2194_01646 [Roseburia inulinivorans DSM
           16841]
          Length = 245

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 100/240 (41%), Gaps = 18/240 (7%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E+ +  L +E   +L   + ++ L   T+++Y+ D  QF+  +     +K          
Sbjct: 15  EVFAMLLKEEINKYLNYCKFQKELDDKTIKAYKADLEQFITVIGENNPDK---------- 64

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLP 126
              + A++     +    +++KR ++ +K+   YL++ ++   +    ++   ++   LP
Sbjct: 65  -EMLNAYLVYLH-RMYKQKTVKRKIASVKALFHYLEEEELIEINPFHKVKTKFREEVILP 122

Query: 127 RALNEKQALTLV-----DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           + +       L+     +  +   S   K I  R+ A++  L+  GLRISE   L  + +
Sbjct: 123 KIIPRDIIEQLLNHLYKERSIKEYSEWRKKIILRDIAVVETLFSTGLRISELCHLQNKYV 182

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
                 L IQGKG K R + +  +   +IL  Y +   +        L   +  + L+  
Sbjct: 183 DLKNGVLCIQGKGGKERYLQIGNNDVLSILNAYKMYFEEEIKKQGYFLSIVMEMRCLSNQ 242


>gi|168187083|ref|ZP_02621718.1| integrase/recombinase [Clostridium botulinum C str. Eklund]
 gi|169294986|gb|EDS77119.1| integrase/recombinase [Clostridium botulinum C str. Eklund]
          Length = 329

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/319 (17%), Positives = 123/319 (38%), Gaps = 44/319 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L+        S +T+++Y  D R  + +      +K   +    ++  ++  F + 
Sbjct: 27  VEEFLEYCSSIDR-SPMTIRNYRSDLRIIINWFK----DKAKNKEFFDITKRDVIKFQNW 81

Query: 78  RRTQKIGDRSLKRSLSGIKSF---------LKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             TQ++    ++R  S + S            Y   R I  +    N+  +++       
Sbjct: 82  CITQEMSPARIRRLRSAMSSMSNYIENMLDNDYPNFRNIINKIPAPNLSAVREKT----V 137

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+++Q   L+D ++     +        +  + +L G G+R SE +            T+
Sbjct: 138 LSDEQVEFLIDELMKSGEIQK-------ACFIAVLAGSGMRKSEIVQCDMS-WYFGHPTI 189

Query: 189 R--------IQGKGDKIRIVPLLPSVRKAI----LEYYDLCPFDLNLNIQLPLFRGIR-- 234
                    I+ KG       L      A+    L+ +     +LN++ +  LF   R  
Sbjct: 190 YEGMYVSPEIRTKGRGKMGKKLNKYTICAVADDYLKQWYAKRQELNIDCE-ALFVTKRNE 248

Query: 235 -GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
             + +       +++   + LG+     AH LRH  AT L  +  ++  I+  +GH   S
Sbjct: 249 QWERIKESTVDSWMQSFTKILGVD--CYAHCLRHYSATWLKKHSVNIDQIRDFMGHNDSS 306

Query: 294 TTQIYTNVNSKNGGDWMME 312
           T++IY ++  +     M++
Sbjct: 307 TSEIYVDIGKEENLVGMLD 325


>gi|168179463|ref|ZP_02614127.1| phage integrase [Clostridium botulinum NCTC 2916]
 gi|182669587|gb|EDT81563.1| phage integrase [Clostridium botulinum NCTC 2916]
          Length = 387

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/286 (18%), Positives = 108/286 (37%), Gaps = 39/286 (13%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +  L   +++ + ++  +       ++     +++FL Y        ++  L  + +   
Sbjct: 108 LADLKTIQVQRYYNELYSAGKTSSVIENLNKLLRTFLNYAVNEGYILKNPCLGSKII--- 164

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             +P   ++K+    +      T+ +      R   ++ L  G GLR  E L+L   +I 
Sbjct: 165 --IPGNKDKKENEIEIFTDKEITALKKALEGHRLKCLILLALGSGLRQGELLALRWSDIN 222

Query: 183 DDQSTLRIQGKGDKI------------------------RIVPLLPSVRKAILEYYDLCP 218
            D   +++      +                        RIVP+   +   + E+  L  
Sbjct: 223 FDTFEIQVNKSIKHVKIISPDGTGERKTIEQSPKSKTSNRIVPIPSKLINVLEEHKALQD 282

Query: 219 FDLNLNIQLPL-----FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            +        +     F    G+P+      R  + +    G+      H+LRH++AT L
Sbjct: 283 IEKKAAGSSYIDKNLIFANEIGRPILVKNIFRIYKNILISAGI-KHKKFHSLRHTYATKL 341

Query: 274 LSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKN---GGDWMMEIYD 315
              G  L+++Q +LGH  +S T  IYT+V  K      D + +++D
Sbjct: 342 FEKGVQLKTVQKLLGHKDISITADIYTHVMPKEKVLAVDKLNDLFD 387


>gi|328947984|ref|YP_004365321.1| integrase family protein [Treponema succinifaciens DSM 2489]
 gi|328448308|gb|AEB14024.1| integrase family protein [Treponema succinifaciens DSM 2489]
          Length = 273

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/300 (14%), Positives = 103/300 (34%), Gaps = 35/300 (11%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           + ++  + Q+L  +  LS+ T+ SY    + +              +     S   + A+
Sbjct: 5   IDQQTPFEQHLRKQ-NLSENTVTSYLWTIKYY-------------TENYEDFSKENLLAY 50

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
                      +++   +  I  +L +  K K+        ++ +K        L  +  
Sbjct: 51  KGWLLEY-FKPKTVNLRIQAINKYLAFTGKDKM-------QLKQVKVQQK--NFL--ENV 98

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           ++  D        +          +++ L   G R+SE   +  +++        +  KG
Sbjct: 99  ISNADYQYFKAQLKADGNIEW-YFVVWFLGATGARVSELTQIKVEHVNI--GWFDLYSKG 155

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K+R + +   +R+    +               +F    G+ +        ++      
Sbjct: 156 GKLRRLYIPKLLREEAQAWLKSID-----RTFGYVFLNRFGERITTRGIATQLKTYAAKY 210

Query: 255 GL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           G+       H+ RH +A + L    D+  +  ++GH  + TT+IY    +    + + +I
Sbjct: 211 GISTKVVYPHSFRHRYAKNFLEKFNDISLLADLMGHESIETTRIYLRRTASEQQEIVDQI 270


>gi|189424492|ref|YP_001951669.1| integrase [Geobacter lovleyi SZ]
 gi|189420751|gb|ACD95149.1| integrase family protein [Geobacter lovleyi SZ]
          Length = 421

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 104/276 (37%), Gaps = 36/276 (13%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK- 120
            + +++   +  + + R        +  R L+ IK+FL    + +      +  ++ LK 
Sbjct: 148 PLTEITPLIVDKWRTGRLKDSKRPATCNRDLTAIKAFLSKAVEWEHLEHHPLAKVKPLKV 207

Query: 121 ------------KSNSLPRALNEKQALTLVDN-----------VLLHTSHETKWIDARNS 157
                       +   L +AL++++ +   +              L+T   +        
Sbjct: 208 DSVAKVRFLSADEEKRLLKALDDREEVARAERATANLWRKERGYPLYTDLNSVSFADHLK 267

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYY 214
            ++ +    G+R  E  SL   ++   ++ + + G   K  K R VPL      A+ ++ 
Sbjct: 268 PMILVSLNTGIRWGELASLAWDSVDMKKALVTVIGDKAKSGKTRHVPLNSIALNALKDWK 327

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                D+       +F G  GK        +  + +     +  +   H +RH FA+ L+
Sbjct: 328 KQSSGDV-------VFPGRDGKK-TLDNVNKSWKAVLDAAQI-KNFRWHDMRHHFASWLV 378

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
             G DL +++ +LGH  L  T  Y ++  ++    +
Sbjct: 379 MAGVDLNTVRELLGHSDLKMTLRYAHLAPEHKAAAV 414


>gi|12746338|gb|AAK07447.1|AF324484_1 site-specific recombinase IntIA [Xanthomonas sp. CIP 102397]
          Length = 289

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 55/282 (19%), Positives = 107/282 (37%), Gaps = 59/282 (20%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           R  S  T Q+Y    R+F++                ++   E+ AF+++  T+  +   +
Sbjct: 29  RHYSIRTEQAYIGWIRRFILANGKRHP--------SEMGAREVEAFLTRLATEGNVSAAT 80

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++LS +    + + +        +  +   K+   LP  L++ +   L+  +   +  
Sbjct: 81  QNQALSALLFLYRNVLQ---IDLPWMEEVVRAKRPRRLPVVLSQDEVARLLAAMPEGSLD 137

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR-------- 198
                      +  LLYG G+R+ E L L  +++   +  + ++ GKG+K R        
Sbjct: 138 ----------LMARLLYGTGMRLMECLRLRVKDVDFARREICVRSGKGNKDRRVPLPDSL 187

Query: 199 IVPLLPSVRKAILEYY------------------DLCPFDLNLNIQLPLFR--------- 231
              L   V +A+L++                    + P      + +P+           
Sbjct: 188 CGRLRRQVERALLQHRSDLEAGQGTGASSRRTGAQVSPRRHRAGLTVPVSLAQALHRSRS 247

Query: 232 -GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
            GI     +    QR I++ R   G+    T H+LRHSFATH
Sbjct: 248 GGIGRHHASEEALQRAIKRARAQAGIAKPATCHSLRHSFATH 289


>gi|254779339|ref|YP_003057444.1| putative integrase/recombinase [Helicobacter pylori B38]
 gi|254001250|emb|CAX29225.1| Putative integrase/recombinase [Helicobacter pylori B38]
          Length = 356

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 63/257 (24%), Positives = 114/257 (44%), Gaps = 18/257 (7%)

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL--KKRKITTESNILNMRNLK--- 120
           +    +  F+S   T  +   + K     +     Y+  + +    +S I N+  LK   
Sbjct: 98  IDEVMLAEFLS-IYTGGLSLATKKNYRIALLGLFSYIDKQNQDENEKSYIYNI-TLKNIS 155

Query: 121 -----KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
                  N LP  LN ++    +++  +     +  + ARN  ++ ++   G+R +EAL 
Sbjct: 156 GTNQSAGNKLPTHLNNEELEKFLES--IDKIEMSAKVRARNRLLIKIIVFTGMRSNEALQ 213

Query: 176 LTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
           L  ++   +    T+ I+GKGDK R V L     +++L+ + +      +   L LF   
Sbjct: 214 LKIKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLIERELYPVKNDL-LFCNQ 272

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +G  L      + + ++  + GL      AH LRHSFAT L     DL  +Q  LGH  L
Sbjct: 273 KGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHASL 332

Query: 293 STTQIYTNVNSKNGGDW 309
           +T++IYT+ + +   + 
Sbjct: 333 NTSRIYTHFDKERLKEA 349


>gi|212693440|ref|ZP_03301568.1| hypothetical protein BACDOR_02956 [Bacteroides dorei DSM 17855]
 gi|212663953|gb|EEB24527.1| hypothetical protein BACDOR_02956 [Bacteroides dorei DSM 17855]
          Length = 297

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 97/257 (37%), Gaps = 17/257 (6%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNL 119
             + L+YT +R F    + +     ++ + +  +++ +     +     +       + +
Sbjct: 35  DFKDLTYTFLRDFEQYLKEKGNAVNTIAKHMRQLRTLVNEAINQGYMHANAYPFRKYK-I 93

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K+       L   +   L          E + +     A L+  Y  GLR S+   LTP+
Sbjct: 94  KQEKGRHEFLIPDELKKL-----ETVEVEEESMRHVLDAFLFCCY-TGLRYSDFCQLTPE 147

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           N       +RI GK   +    +   V   +  +       L +  + P    +   P N
Sbjct: 148 NF------IRINGK-RWLYFKSVKTGVEIRLPLHLLFESRALGILDRYPDSGSLAALPCN 200

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                R +R+L    G+    T H  RH+ AT L+  G  + ++Q +LGH  + TTQIY+
Sbjct: 201 SE-VNRQLRKLAGLCGIKKRITYHVSRHTCATLLIHQGVAITTVQKLLGHTSVKTTQIYS 259

Query: 300 NVNSKNGGDWMMEIYDQ 316
            + S      +     +
Sbjct: 260 EILSSTIVRDLKNAQRK 276


>gi|436132|emb|CAA82325.1| unnamed protein product [Clostridium butyricum]
          Length = 364

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 55/350 (15%), Positives = 126/350 (36%), Gaps = 79/350 (22%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR---------- 79
             ++ TL+ Y    + +  +L             ++++  ++  F++  +          
Sbjct: 28  NFARNTLRMYCQHLKLYFEYLEQRG------LDFQKVTIDDLALFVNWLQNPYKSLKVIP 81

Query: 80  ----TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN----------------- 118
                     R++   ++ + +F  Y+ + +  + +    ++                  
Sbjct: 82  TNKVESSRSPRTINIVVNTVLAFYDYILRHEEYSNNISDRLKKFVSAPSRNFKGFLYGIA 141

Query: 119 ------------LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
                       LK  NS P+ L +++  TL++             + R+  +L LLY  
Sbjct: 142 YEQKKVTSNILRLKVPNSKPKTLTKEEITTLINTC----------NNFRDKFLLNLLYET 191

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKI-----------RIVPLLPSVRKAILEYYD 215
           G+RI EALSL  ++       + ++ +G+             R + +  ++    +EY  
Sbjct: 192 GIRIGEALSLWIEDFDISDMIIDLKDRGELENNAEIKTVSSPRRIDISQNLADMFMEYVA 251

Query: 216 LCPFDLNLNIQLPLFRG--IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
               +      + +      + KP+N        R L++   +    T H  RH+  T L
Sbjct: 252 EYHTEEVETNHVFIKISGENQYKPMNYIDVDNLFRTLKKKTDI--HVTPHIFRHTSLTIL 309

Query: 274 LSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPSIT 322
              G +   ++   GH  + TT Q Y + + K     + E +++T P++ 
Sbjct: 310 RMAGWEPELLRIRAGHKNIYTTLQTYIHPSDKE----ITEEFNKTQPNLD 355


>gi|255527691|ref|ZP_05394548.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|255508604|gb|EET84987.1| integrase family protein [Clostridium carboxidivorans P7]
          Length = 215

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 8/189 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           +   + +A  L + +             R+ AI  + Y CGLR SE   +  ++    + 
Sbjct: 26  KYFTQNEAAKLFNAIESFQ----GIHSIRDLAIFRVAYRCGLRASEIALIKLEDYNASKG 81

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            L  +           L    K++L+ Y      L+     PLF   + KP++       
Sbjct: 82  ELYCKRLKGSSNNTIRLDIKTKSVLDKYIAKYRILS--ESSPLFVSQQNKPISRQTLDYL 139

Query: 247 IRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           I++      +   T    H+L+H+ A HL  +G D++ +Q  LGH  +S T+IY    +K
Sbjct: 140 IKKYCSLANISDKTKYHFHSLKHTTAVHLAESGMDIKELQWWLGHKSVSNTEIYFQFTTK 199

Query: 305 NGGDWMMEI 313
                  ++
Sbjct: 200 QQEKMYAKL 208


>gi|120435029|ref|YP_860715.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|117577179|emb|CAL65648.1| phage integrase family protein [Gramella forsetii KT0803]
          Length = 412

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 59/305 (19%), Positives = 122/305 (40%), Gaps = 25/305 (8%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEI 71
           E+ +E  + +++L I +  +  T + Y    +    F+   Y +  I +Q +     T +
Sbjct: 120 EIFQEHNDKVESL-IGKDFATGTAERYRTCKKHVAAFVKQKYNKNDIPVQDVDHKFITGL 178

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALN 130
             ++  + T+K    S  + ++  K  ++         +   L+ +  LK        L 
Sbjct: 179 EYYL--KTTRKCAHNSAIKYITNFKKIIRIAHANDWIDKDPFLHWKGKLKIVER--EFLT 234

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQST 187
           E++   ++D  L     + + +D      ++  +  GL  ++   L   +I    D +  
Sbjct: 235 EEEIQKIIDLHL-----KMERLDQVRDIFIFCCF-TGLAYADVKKLNRGDISVGADGEEW 288

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           ++ +      R    +  + K I+E Y         ++ LP+        L+      YI
Sbjct: 289 VKTKRSKTDTRSNIPILPIAKTIIEKYKDNELLKEKDLVLPV--------LSNQKMNAYI 340

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +++    G+  + T H  RH+FAT + L+NG  + S+  +LGH  L TTQ Y  +     
Sbjct: 341 KEIANLAGISKNLTFHLARHTFATTVTLTNGVPIESVSKMLGHTNLKTTQHYAKILDMKV 400

Query: 307 GDWMM 311
              M 
Sbjct: 401 SKDMA 405


>gi|229000404|ref|ZP_04159960.1| Site-specific recombinase, phage integrase [Bacillus mycoides
           Rock3-17]
 gi|228759361|gb|EEM08351.1| Site-specific recombinase, phage integrase [Bacillus mycoides
           Rock3-17]
          Length = 360

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/316 (18%), Positives = 119/316 (37%), Gaps = 26/316 (8%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + +L+ +++ + L   +L         F    AF+ E+      +  ++   I  +I
Sbjct: 33  RLFERFLE-VKVRQNLRPKSLN---QFVLMFNSIKAFHNEKNTKAFYLSDITTNFISDWI 88

Query: 76  SKRRTQ-----------------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
              + +                  + D ++   +  +K+F+ +  K  +      +    
Sbjct: 89  GWLKNEYVRYDGHTYMPKTSQTVGLSDETIAIRIKRLKTFINWCLKEALIKLDPFIKFEG 148

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            +K +     L + +   L+   +  +     +   R+  +L+LL     RI+EAL L+P
Sbjct: 149 FRKDSKEIDFLTKDELNRLL--KVAKSYSNKSYKHFRDYVLLHLLIDGMFRITEALLLSP 206

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRK--AILEYYDLCPFDLNLNIQLPLFRGIRGK 236
            +I     T  I+    K R   ++P   K   +L             +   +F  + G+
Sbjct: 207 LDIDHTNKTTIIRSNNAKSRKARVVPLSNKTYRLLMQLLEENEAFEGEVDDLIFLSLSGR 266

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L+     R +R+      +      H +RHS ATH LS G D+ S++ ILGH  L    
Sbjct: 267 MLSKNNVLRDMRKYAVEANITKRFYLHLIRHSAATHHLSTG-DIESLRKILGHIDLRMVL 325

Query: 297 IYTNVNSKNGGDWMME 312
            Y ++      +   +
Sbjct: 326 HYAHMADNTVQEKHAK 341


>gi|153005656|ref|YP_001379981.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5]
 gi|152029229|gb|ABS26997.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5]
          Length = 451

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/309 (18%), Positives = 119/309 (38%), Gaps = 37/309 (11%)

Query: 15  LKERQ-NWLQ-NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           L E +  +++ +++  R L   T ++YE   R        + E       +  +    ++
Sbjct: 101 LAEFKPRFIEGHVKANR-LKPSTAEAYESVFR-------THLEPTFGSLRLDAIGDELVQ 152

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F  +    ++ ++S+   L+ +   LK     K+        +R LK         +  
Sbjct: 153 RFKGELVEDEMANKSINNVLTALSVMLKRAVDWKVIDAMPC-RIRLLKWELVEVPFYDFA 211

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   LV+            ID R   ++ L    GLR  E ++L   ++   + T+ +Q 
Sbjct: 212 EYRYLVE--------GAAAIDPRIELLVLLGGDAGLRRGETIALEWTDVDLRRRTVHVQR 263

Query: 193 ----------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
                     KG + R +PL   + +A+  +  L    +                     
Sbjct: 264 SSWNGHVTLPKGGRSRRLPLTERLAEALRSHRHLKGPRVLYYDGGASPTNKE-------- 315

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            + ++++ +R   LP +   H LRH+F +HL   G   ++IQ + GH  L+TTQ Y +++
Sbjct: 316 IRMWVQRAQRRAVLPATGAYHILRHTFCSHLAMQGATAKAIQELAGHQDLTTTQRYMHLS 375

Query: 303 SKNGGDWMM 311
             +    + 
Sbjct: 376 PAHKDAAIR 384


>gi|295116277|emb|CBL37124.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1]
          Length = 275

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 55/281 (19%), Positives = 109/281 (38%), Gaps = 42/281 (14%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           +L+   I  F+ K++ Q +   +++  L  +K  ++  K+R I        + + ++   
Sbjct: 5   KLTNRVILEFVRKKQRQGLSAGTVRLLLFLLKRIVQAGKERGIW---PAEEL-SFRQPRQ 60

Query: 125 LP--RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           L   + + E +    + + LLH+              L +    G+R+ E   +   +I 
Sbjct: 61  LSGGKNIMEWEDFHKILSYLLHSRRSFDLG-------LLISLSTGIRVGELCGIKWGDID 113

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVR-------KAILEYYDLCPFDLNLNIQLPLFR---- 231
                LR++    +IR V +    +       + I++           +I LP F     
Sbjct: 114 LKAGILRVRRTVSRIRNVDIEEQQKPFPAKQSRTIIQIGPPKTETSVRDIPLPQFLVERL 173

Query: 232 ----------------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
                             R + + P   QR  + L +  G+      H+LRHSFA+  + 
Sbjct: 174 RERQEERRFSSQAYVLTGRAQFMEPRGVQRRFKNLLKKCGIE-PVNIHSLRHSFASKWIE 232

Query: 276 NGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYD 315
           NG D +++  ILGH  +  T  IY + + +    +M  + D
Sbjct: 233 NGFDSKALSEILGHSSVKITMDIYVHSSMRQKKSYMDRVLD 273


>gi|187932918|ref|YP_001886980.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium botulinum B str. Eklund 17B]
 gi|187721071|gb|ACD22292.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium botulinum B str. Eklund 17B]
          Length = 398

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 68/335 (20%), Positives = 127/335 (37%), Gaps = 53/335 (15%)

Query: 18  RQNWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
             ++L     E     L + T+ +Y    + ++       + K+ I  ++ L+   +++F
Sbjct: 65  FNDYLDYWIKEYAQVNLKETTVDNYNKKIKLYI-------KPKLGIYKLKSLTPAILQSF 117

Query: 75  ISKRRTQKIGDRSL---KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           I+++  +     +L   K  LSG  S    ++       S +  +R      ++P     
Sbjct: 118 INEKFNEGFSRNTLLVLKGILSG--SLNYAVEPLGYIKFSPMAAVRLP-LKRAVPNTPTR 174

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           K+   +V    +    E       +   L L Y CGLR+ EA ++T  ++      L I 
Sbjct: 175 KKEKYIVSEEQMEGIFERFPFGHSSYLPLQLAYRCGLRLGEAFAITWDDVDLKNQKLDIN 234

Query: 192 G--------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                          K D  RI+ L  ++   + +Y      D     +L     I  K 
Sbjct: 235 KQVQYKNKQWYFTPPKYDSYRIIDLDNTIIDILKKYKQQQRKDKIYYGELYTELKINDKK 294

Query: 238 ---------------------LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
                                + P V Q     +   LG+      H+LRH+ AT LLS+
Sbjct: 295 QIKETDGTEIHLINIRENGTYIQPRVMQHCFHIIHHKLGI-KELDYHSLRHTHATMLLSS 353

Query: 277 GGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           G +++++Q  LGH +L  T  +YT+V  +   + +
Sbjct: 354 GANIKAVQERLGHKKLDMTLDVYTHVTDEMRRNTI 388


>gi|325859512|ref|ZP_08172654.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325482980|gb|EGC85971.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 413

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 64/311 (20%), Positives = 123/311 (39%), Gaps = 26/311 (8%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L +  +++L      +     TL+ +         +L  Y    + +     ++   + 
Sbjct: 105 KLGQSFEDFLLRESHTKH--PATLKHHRTRLSHLYSYL--YERNMVCM----DITTEIMI 156

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE------SNILNMRNLKKSNSLP 126
            F++     K         +S I++F+K+L +RK   +       N+L ++    S  +P
Sbjct: 157 GFLAHLDNIKTIAERDNHIIS-IRAFMKFLCERKELQDCSYERWINLLRLKRP-VSKKIP 214

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
               +++   ++      +      I  RN A++ L    GLR  + + +   NI  D +
Sbjct: 215 SVYTQEEVERII-----ASIDRISTIGKRNYAMILLCARYGLRAIDVVGMRFCNIDWDTN 269

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            +R++  K DK   +PL   V  A+++Y        N    L +        L+ GV   
Sbjct: 270 EIRVRQQKTDKEITLPLSEEVGCALIDYIKNGRPSANT-PYLFIKHSAPYGALSSGVMAL 328

Query: 246 YIRQLRRYLGLP---LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +    R  G+      T +H LRHS A++LL     L  I  ILGH    +T+ Y  V+
Sbjct: 329 NVSTYMRRAGIDSTGKRTGSHILRHSLASNLLKANEQLPVISEILGHKSTESTKSYLKVD 388

Query: 303 SKNGGDWMMEI 313
                   +++
Sbjct: 389 LDRLRQCALDV 399


>gi|260909619|ref|ZP_05916318.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260636262|gb|EEX54253.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 417

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 54/290 (18%), Positives = 107/290 (36%), Gaps = 15/290 (5%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           R    F+     + I I  I +  + E R F+ KR    +   ++  +L  +   +    
Sbjct: 136 RNLREFVENKGVQDIPIGIITEDLFEEYRFFLKKR---GLKASTVNSNLCWLSRLIFRAV 192

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
            ++I   +   N +  K+   + R L +   + L+   +     E          +    
Sbjct: 193 SKRIIRCNPFENAKYEKEEKKI-RFLQKGDVMKLMAMRMNDKETELA------RQMFIFA 245

Query: 164 YGCGLRISEALSLTPQNI---MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
              GL +++   L   +I   +D Q  +R  + K     IVPL P     I    +    
Sbjct: 246 CFTGLAVADMEHLQYGHIQTAVDGQKYIRKERQKTKVEFIVPLHPVAEVIINHCRNEQKR 305

Query: 220 DLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
           +            +  +P  +  V  + +  + +  G+    + H  RH+F T  LS G 
Sbjct: 306 NEEQQTMKEYGDSLVFQPDSSRSVMGKNLSIVGKACGIRQRLSYHIGRHTFGTMSLSAGI 365

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
            + SI  ++GH  +S+TQ+Y  V      + M  +  +       + ++N
Sbjct: 366 PIESIAKMMGHASISSTQVYAQVTDNKISEDMDMLIAKQSEKEMAEREEN 415


>gi|170076497|ref|YP_001733136.1| phage integrase family protein [Synechococcus sp. PCC 7002]
 gi|169887359|gb|ACB01067.1| phage integrase family [Synechococcus sp. PCC 7002]
          Length = 297

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/291 (19%), Positives = 115/291 (39%), Gaps = 18/291 (6%)

Query: 27  IER-GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           +ER GL+  T++SY       L     +         I  L    ++ ++ +   + +  
Sbjct: 12  LERPGLAPSTVRSYTTALLPLLANYGAW--------PITHLDRKTLQDYLQQL--EHLSY 61

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            + +R  + ++S L +  +++    + +  +   +K N      +  Q +  +    L  
Sbjct: 62  TTHRRHQAILQSLLNFAVEQQYLVTNPLARLPQ-RKPNPNKGEHHSDQTIRYLTPDQLQV 120

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
            ++      R   ++ LL+  G RI+E LSL    +   +   ++ GKG+K R     P 
Sbjct: 121 LYQATAQQPRLHCLVRLLHRTGARIAELLSLDYDQVDLQERRFQVVGKGNKQRWCFYSPD 180

Query: 206 VRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           V +++   L+YY           Q PL        L+        R + +          
Sbjct: 181 VDESLGIYLKYYRHPEHPALFTAQQPL--TKAVSRLSYRTAYSDWRTMTQREPQLQGLRF 238

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           H LRH+FAT  +   G + ++++++GH  + TT  Y  V S+       E 
Sbjct: 239 HDLRHTFATERVGLMG-IETLRALMGHENIQTTLRYQKVTSQRAETIAKEA 288


>gi|37525910|ref|NP_929254.1| hypothetical protein plu1991 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36785339|emb|CAE14284.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 206

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 8/180 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R L + +   +++        +      R+  ++Y+ +  GLR+SEA  L   ++  +  
Sbjct: 5   RHLTQYEVERMLEV------AKKGPNGERDYCLVYMSFVHGLRVSEARYLRISDLDLEDG 58

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
           +L I+  KG    I PLL    +AI E+  +            LF    G PL      +
Sbjct: 59  SLYIRRLKGGFSTIHPLLGYEIQAIREWLKVRKT-FRGAESDWLFLSRSGNPLTRQRIYQ 117

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            I QL R   + + +  H LRH+    L   G D R IQ  LGH  +  T  YT  N++ 
Sbjct: 118 LISQLGRLANISVGSHPHMLRHACGFALADRGIDTRLIQDYLGHSNIRHTVRYTASNAER 177


>gi|229179599|ref|ZP_04306951.1| Integrase-recombinase [Bacillus cereus 172560W]
 gi|228603893|gb|EEK61362.1| Integrase-recombinase [Bacillus cereus 172560W]
          Length = 390

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 65/307 (21%), Positives = 116/307 (37%), Gaps = 34/307 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEE--------KITIQTIRQLSYTEIRAFISKRRT 80
           +   + T +SY  +   F   +  + EE        +     ++ L    IR + S  + 
Sbjct: 81  KNRKEDTKKSYVSEILSFCQCMVQHAEEFELNGEEVQKNDSLLKTLQPWHIRKYNSWLKR 140

Query: 81  -------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--NLKKSNSLPRALNE 131
                        +L +    I+SFLK+L       +     ++  N+ + +   R L+ 
Sbjct: 141 VENGRNGDTYAVATLAKKTVLIRSFLKHLHAFSYIEKPLHEELQRANVNEQDRPNRDLSY 200

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRI 190
            + + ++           +     N  IL  L   G RI E  +   ++   D +  L++
Sbjct: 201 DEVMKILGFF-------KERGHLVNYTILLALASTGARIQELCTARVKDLHYDGKYWLKV 253

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            GKGDK+R + +   + + I E      F   L+   + P+F   RG   N       + 
Sbjct: 254 TGKGDKVRELFISEHLYQCICEMRLRRGFQTVLDKGDESPVFINQRGNTYNSKTLSNQVT 313

Query: 249 QLRRYLGLPL------STTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTNV 301
            + +   L          TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   
Sbjct: 314 DMIKKTNLEFLLYRENPVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEK 373

Query: 302 NSKNGGD 308
           + K   +
Sbjct: 374 HMKRKNN 380


>gi|270294207|ref|ZP_06200409.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275674|gb|EFA21534.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 420

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 60/292 (20%), Positives = 113/292 (38%), Gaps = 30/292 (10%)

Query: 31  LSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSL 88
            S +T+  Y+   R+   F+  FY ++ IT     +LS   IRAF    +T+  +   ++
Sbjct: 138 YSPVTINRYKNVLRKLETFVPRFYEKDDITFH---ELSPDFIRAFDVFLKTEAGLCRNTI 194

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R +  +K        ++   +      + +++  + P  L   +   +++        E
Sbjct: 195 VRYMKCLKKITNMAIAKEWMRKDPFYGYK-MEQDETDPVFLTNNELQAIMNREFDIPRLE 253

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
                     I       GL  ++  +L P+++  D +      KG          S   
Sbjct: 254 LV------KDIFLFACFTGLAFADVSTLRPEHLEQDNNGDWWIRKGRVKLERRRKSSSIA 307

Query: 209 ---------AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
                    AIL+ Y+  P  L     LP+    +           Y++++  + G+  +
Sbjct: 308 NVPLLPVPLAILKKYESHPICLKQGTCLPVVCNQKA--------NSYLKEIADFCGIKKN 359

Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            T H  RH+FAT + L+N   L+ + ++LGH     TQ Y  V  +N  D M
Sbjct: 360 LTTHAARHTFATTVTLANNVPLQEVSAMLGHASTRMTQHYARVMDRNLKDNM 411


>gi|107022990|ref|YP_621317.1| phage integrase [Burkholderia cenocepacia AU 1054]
 gi|105893179|gb|ABF76344.1| phage integrase [Burkholderia cenocepacia AU 1054]
          Length = 578

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 69/339 (20%), Positives = 121/339 (35%), Gaps = 51/339 (15%)

Query: 16  KERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           KE +  +    +ERG  LS LT +    D   +  F+   T  +  +  +R     + R 
Sbjct: 247 KEAERLILWAIVERGRALSSLTTE----DALAYRAFIRRPTPHERWVGPVRPRGAPDWRP 302

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F     +  +  RS   +LS + +  ++L +++    +    ++   +      AL+   
Sbjct: 303 F-----SGALSARSAAYTLSVLGALFRWLIEQRYLLANPFAGVKV--RDTRGATALDTSH 355

Query: 134 ALTLVDNVLLHT-----------------SHETKWIDARNSAILYLLYGCGLRISEALSL 176
           A T  + +L+ T                    T     R   IL   Y  GLR SE +  
Sbjct: 356 AFTEGEWLLVRTIADGLEFGKRTADGAPQPGWTPAAAQRLRFILDFGYATGLRASELVGA 415

Query: 177 TPQNIMDDQS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLF 230
           T  +I  D      L++ GKG K   V L P  R A+  Y       +         PL 
Sbjct: 416 TLGDIETDAHGDAWLKVIGKGSKAARVALPPLARTALDRYLVARRLPVTPARWRPDTPLI 475

Query: 231 RGIRGK---PLNPGVFQRYIRQLRRY------------LGLPLSTTAHTLRHSFATHLLS 275
             +       +      + +++                       + H +RH+ ATH L+
Sbjct: 476 PRLAEDDAAAITSVRLWKVMQRFFAQTADAVEADHPALAHKLRQASPHWMRHTHATHALA 535

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            G +L +++  L H  +STT IY + +       M   +
Sbjct: 536 RGAELTTVRDNLRHASISTTSIYLHGDDVKRARQMSSAF 574


>gi|116686767|ref|YP_840014.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
 gi|116652482|gb|ABK13121.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
          Length = 578

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 69/339 (20%), Positives = 121/339 (35%), Gaps = 51/339 (15%)

Query: 16  KERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           KE +  +    +ERG  LS LT +    D   +  F+   T  +  +  +R     + R 
Sbjct: 247 KEAERLILWAIVERGRALSSLTTE----DALAYRAFIRRPTPHERWVGPVRPRGAPDWRP 302

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F     +  +  RS   +LS + +  ++L +++    +    ++   +      AL+   
Sbjct: 303 F-----SGALSARSAAYTLSVLGALFRWLIEQRYLLANPFAGVKV--RDTRGATALDTSH 355

Query: 134 ALTLVDNVLLHT-----------------SHETKWIDARNSAILYLLYGCGLRISEALSL 176
           A T  + +L+ T                    T     R   IL   Y  GLR SE +  
Sbjct: 356 AFTEGEWLLVRTIADGLEFGKRTADGAPQPGWTPAAAQRLRFILDFGYATGLRASELVGA 415

Query: 177 TPQNIMDDQS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLF 230
           T  +I  D      L++ GKG K   V L P  R A+  Y       +         PL 
Sbjct: 416 TLGDIETDAHGDAWLKVIGKGSKAARVALPPLARTALDRYLVARRLPVTPARWRPDTPLI 475

Query: 231 RGIRGK---PLNPGVFQRYIRQLRRY------------LGLPLSTTAHTLRHSFATHLLS 275
             +       +      + +++                       + H +RH+ ATH L+
Sbjct: 476 PRLAEDDAAAITSVRLWKVMQRFFAQTADAVEADHPALAHKLRQASPHWMRHTHATHALA 535

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            G +L +++  L H  +STT IY + +       M   +
Sbjct: 536 RGAELTTVRDNLRHASISTTSIYLHGDDVKRARQMSSAF 574


>gi|224535543|ref|ZP_03676082.1| hypothetical protein BACCELL_00407 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522833|gb|EEF91938.1| hypothetical protein BACCELL_00407 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 268

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/298 (16%), Positives = 112/298 (37%), Gaps = 38/298 (12%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           + + +L+    +  L++ T+ +Y    + +                 ++L+   + A+ S
Sbjct: 5   DFEAFLR----QENLAQNTITAYLYAVKDYYAHY-------------KELNKRNLIAYKS 47

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                    +++   + G+  +L+Y+ K ++       +M+ +K+          +  ++
Sbjct: 48  YMIDN-FKPKTVNLRILGLNKYLRYVGKSRL-------HMKTIKEQQRT----YLENVIS 95

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
             D   L     T+       A +  L   G RISE + L  ++I        I  KG K
Sbjct: 96  NADYEFLKNRLRTEKNRMWYFA-VRFLAATGARISELIHLKTEHI--TAGYFDIYTKGSK 152

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +R + +   +    +E+               +F    G+ +      + ++      GL
Sbjct: 153 VRRIYIPKILCAEAIEWLSE-----QSRFSGYVFMNQYGQRITTRGIAQQLKNYAIKYGL 207

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                  H+ RH FA + L    D+  +  ++GH  + TT+IY   +S    + + ++
Sbjct: 208 NEKVVYPHSFRHRFAKNFLDKFNDISLLADLMGHESIETTRIYLRRSSDEQQEIVNKV 265


>gi|303235575|ref|ZP_07322182.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302484022|gb|EFL47010.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 481

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/292 (19%), Positives = 109/292 (37%), Gaps = 29/292 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K TL+ Y    +    FL   Y  + I ++ +     ++   F+  R  +     ++  
Sbjct: 200 AKGTLEKYRVVYKHLQEFLDIRYHVKDIALKELTPAFISDFEMFL--RTDKHCCTNTVWL 257

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +  +++ +      +  T         +KK  +    L + +   L++  L +   E  
Sbjct: 258 YVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKDEIRLLMEGKLKNAKQE-- 314

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRI-QGKGDKIRIVPLLPSV 206
                   +       GL  ++  +LT +N     D+   + I + K   +  + LL   
Sbjct: 315 ----LYRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRKKTGVVSNIRLLDIA 370

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            + I +Y  LC                R  P+ +       IR + +  G+    T H  
Sbjct: 371 NRIIGKYRGLCE-------------NGRIFPVPHYNTCLAGIRAVAKRCGITKHITWHQS 417

Query: 266 RHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           RH+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +     M  +  +
Sbjct: 418 RHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMENLAAR 469


>gi|302864521|ref|YP_003833158.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
 gi|302567380|gb|ADL43582.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
          Length = 383

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 60/311 (19%), Positives = 110/311 (35%), Gaps = 40/311 (12%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            WL++++   G    TL  Y     + L+         +    + +L+  E++ F++  R
Sbjct: 78  EWLRDVKAHDGTRPSTLARYRLAVTKHLV-------PGLGRVKLDRLTPREVQRFLTGLR 130

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
             K+   S+ +  + ++  L   ++  +   +     +         RAL  ++A  L+ 
Sbjct: 131 -GKLAPASIIKVHAVLRVALADAERMDLVARNVAKAAKPPALGRVERRALTPEEAKQLL- 188

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------- 191
                    +     R  ++  L    GLR +E L L   ++      L ++        
Sbjct: 189 ---------SVLTGDRLESLFVLALATGLRRAELLGLRWSDVDLPGKALFVRQTVQRTDR 239

Query: 192 -------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLN 239
                        R +PL     +A+         +     +L      +F    G  + 
Sbjct: 240 GLEFVPPKTHRSSRPLPLSALAVRALEAQRVRQARERLAAGELWSDLGLVFASTIGTAME 299

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIY 298
           P    R   QLR   GL      H LRH+FAT LL  G +LR++  +LGH  +  T   Y
Sbjct: 300 PRNVNRRFEQLRAAAGLDW-LHLHDLRHAFATFLLDQGEELRTVMELLGHSTIRMTADTY 358

Query: 299 TNVNSKNGGDW 309
            +V        
Sbjct: 359 GHVLPARARQA 369


>gi|260891942|ref|YP_003238039.1| integrase family protein [Ammonifex degensii KC4]
 gi|260864083|gb|ACX51189.1| integrase family protein [Ammonifex degensii KC4]
          Length = 383

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 106/300 (35%), Gaps = 48/300 (16%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-------QKI 83
           LS  T + Y      +LI         +    +R+LS   +  FIS            KI
Sbjct: 84  LSLRTWERYGQLIEHWLIPH-------LGGIPLRKLSPVHLEKFISAMLEADRLDGKGKI 136

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
              +++ +   +   L+   K+++   + +  +   +K+   P AL E +   L+     
Sbjct: 137 SPTTVRHAALVLNKALRDAVKKRLIPYNPMEAVDKPRKARKEPPALKEGELRRLM----- 191

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI------------- 190
                +        A + L    G R+ E L L  +++  +   + I             
Sbjct: 192 -----SAAEGTYLYAPITLAVYTGARLGEILGLRWRDVDFEAGCIFILQALKRNLKGELY 246

Query: 191 ---QGKGDKIRIVPLLPSVRKAI-----LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
                     R + + P+   A+     L+                +     G P++P  
Sbjct: 247 FDEPKTPRSRRRIEIGPACLAALRKQKKLQAEWKLKAGSAWQETGLVCTREDGSPIDPHA 306

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           F    R+L   LG+      H LRH+ AT LL  G  L+ +   LGH  ++ T  +Y++V
Sbjct: 307 FSSAFRKLASKLGID--ANFHALRHTHATMLLKAGVHLKIVSERLGHASVAITGDLYSHV 364


>gi|317049649|ref|YP_004117297.1| integrase family protein [Pantoea sp. At-9b]
 gi|316951266|gb|ADU70741.1| integrase family protein [Pantoea sp. At-9b]
          Length = 343

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 89/236 (37%), Gaps = 31/236 (13%)

Query: 79  RTQKIGDRSLKRSLSGIKSFL-KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R + +  R++   L+  ++   +  +  + T  + + N+R  K S S    L  ++   L
Sbjct: 123 RVKTVTPRTVNLELAYFRAMFNELRRLDEWTAPNPLENVREFKISESEMAYLTIEEIRAL 182

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +       S +          I+ +    G R SEA  L   N +     + ++ KG K 
Sbjct: 183 LAECENSRSKDLT-------TIVKICLATGARWSEAEGLK-GNQIRAGQIIYVKTKGKKN 234

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL- 256
           R VP+   ++  +           +      LF                 R+  +  G+ 
Sbjct: 235 RAVPITEKLQAEL----------PSSRKAQQLF----------ATCYSAFRKAMQRAGIE 274

Query: 257 -PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            P     H LRH+FA+H + NGG++  +Q ILGH  +  T  Y +    +  D   
Sbjct: 275 TPAGQLTHVLRHTFASHFMMNGGNILVLQRILGHTDIKVTMRYAHFAPDHLDDAKK 330


>gi|206972947|ref|ZP_03233869.1| integrase family protein [Bacillus cereus AH1134]
 gi|206731831|gb|EDZ49031.1| integrase family protein [Bacillus cereus AH1134]
          Length = 390

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 65/307 (21%), Positives = 116/307 (37%), Gaps = 34/307 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEE--------KITIQTIRQLSYTEIRAFISKRRT 80
           +   + T +SY  +   F   +  + EE        +     ++ L    IR + S  + 
Sbjct: 81  KNRKEDTKKSYVSEILSFCQCMVQHAEEFELNGEEVQKNDSLLKTLQPWHIRKYNSWLKR 140

Query: 81  -------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--NLKKSNSLPRALNE 131
                        +L +    I+SFLK+L       +     ++  N+ + +   R L+ 
Sbjct: 141 VENGRNGDTYAVATLAKKTVLIRSFLKHLHAFSYIEKPLHEELQRANVNEQDRPNRDLSY 200

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRI 190
            + + ++           +     N  IL  L   G RI E  +   ++   D +  L++
Sbjct: 201 DEVMKILGFF-------KERGHLVNYTILLALASTGARIQELCTARVKDLHYDGKYWLKV 253

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            GKGDK+R + +   + + I E      F   L+   + P+F   RG   N       + 
Sbjct: 254 TGKGDKVRELFISEHLYQCICEMRLRRGFQTVLDKGDESPVFINQRGNTYNSKTLSNQVT 313

Query: 249 QLRRYLGLPL------STTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTNV 301
            + +   L          TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   
Sbjct: 314 DMIKKTNLEFLLYRENPVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEK 373

Query: 302 NSKNGGD 308
           + K   +
Sbjct: 374 HMKRKNN 380


>gi|20091635|ref|NP_617710.1| site-specific recombinase [Methanosarcina acetivorans C2A]
 gi|19916802|gb|AAM06190.1| site-specific recombinase [Methanosarcina acetivorans C2A]
          Length = 322

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/338 (17%), Positives = 118/338 (34%), Gaps = 45/338 (13%)

Query: 5   NLPEIVSFELLKE----RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ++P+++  E  K       ++L +  + R  S  T+ SY+     FL F           
Sbjct: 11  DMPDLLVLETTKNEIDLLDSFLCDCAV-RNFSPRTIASYKSHLNYFLQFYPV-------- 61

Query: 61  QTIRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNI-----L 114
                 S  +++ F+   R +  +   +++     + +F ++L   ++  E+ I      
Sbjct: 62  ----SASTNDLKDFLVLLRDERGLSVSTVENYFCSLSTFYEFLVWERVVKENIIPSFRKR 117

Query: 115 NMRNLKKSNSLPRAL-NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
            +R  K+     R L N +Q   L+D+           +D +   +  +    G+R  E 
Sbjct: 118 YIRYYKEQRHEERQLINLEQMKWLIDS----------AVDLQIKTMFLVFAKTGIRRQEL 167

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
           + L   ++   ++ + ++    K     +      +    + +     +      LF G 
Sbjct: 168 IDLDRSDVYPKKNMIILKNHHFKRSNRTIFYDEECSFFMNHWIKWRYNHNINNPALFIGP 227

Query: 234 RGKPLNPGVFQRYIRQLRRYLG-------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           +G  +          +    LG       L    T H  RH F T L   G     +Q +
Sbjct: 228 QGGRICRDRVYTVTTEHAEKLGFHDPAGKLEEKFTPHCFRHFFTTWLRRAGCPREYVQEL 287

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
            G  R     IY ++      D + E Y +  P +  K
Sbjct: 288 RGDSRKEAIDIYHHIT----HDELREAYMKYVPKLGIK 321


>gi|330814554|ref|YP_004362729.1| phage integrase family protein [Burkholderia gladioli BSR3]
 gi|327374546|gb|AEA65897.1| phage integrase family protein [Burkholderia gladioli BSR3]
          Length = 559

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 68/320 (21%), Positives = 122/320 (38%), Gaps = 34/320 (10%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +ERG +  +L S   D   +  FL   T     +   R  S  E R F     T  +   
Sbjct: 248 VERGKALSSLTS--EDATAYRAFLRHPTRRARWVAPARPRSSPEWRPF-----TGALSPD 300

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-----LPRALN--EKQALTLVD 139
           S+  +LS + +  ++L +++    ++   ++ ++ +       + RA    E + +  + 
Sbjct: 301 SIAYALSVLSAMFRWLIEQRYVLANSFAGLK-VRGAQRNGELDISRAFTAGEWELIRTIA 359

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDK 196
           + L  +   T     R   +L   Y  GLR  E + +T   I      +  L + GKG K
Sbjct: 360 DGLEWSHGWTVPAAQRLRFVLDFGYATGLRAGELVGVTLGGIETGARGERWLHLTGKGAK 419

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLF-----RGIRGKPLNPGVFQRYIR 248
              V L P    A+ +Y       +         PL       G    P    V +R+  
Sbjct: 420 AGKVVLPPLATHALDQYLVQRGLPVTSARWQPDTPLLGHLDAPGGITTPRLREVLRRFFH 479

Query: 249 QLRRYLGLP--------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                + +            T H +RH+ ATH L+NG  L +++  L H  ++TT IY +
Sbjct: 480 AAADAIEVDHPALADKLRRATPHWMRHTHATHALANGATLTTVRDNLRHASITTTSIYLD 539

Query: 301 VNSKNGGDWMMEIYDQTHPS 320
            +       +  I+ +  P+
Sbjct: 540 DDEVQRTRQIERIFARRPPA 559


>gi|167041103|gb|ABZ05864.1| putative Phage integrase family protein [uncultured marine
           microorganism HF4000_48F7]
          Length = 317

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/300 (15%), Positives = 110/300 (36%), Gaps = 14/300 (4%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
             K  + +L + E  R  S  T+ +Y    +++        ++      ++    +++  
Sbjct: 32  FQKAVERFLAHCEA-RN-SPRTVYTYSDSLKRW--------QQANGNPCVQDYQRSQLDN 81

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +I++ R + + DR++   +  ++ F  +  + ++        ++ L+    +P+  +  Q
Sbjct: 82  YIAQERERGLNDRTINHHIRNVQRFFNWAYEEELV--DRPFKLKQLRAVTVIPQTWSRDQ 139

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              + + +                   +L    G+R SE + L   +I      L     
Sbjct: 140 LELMREYIERKLKETDSRRFIVLRRAFFLFRYTGMRASELIHLRWDHISHQGIWLESNKD 199

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
                    +  V K + ++ D    +  + +      G   +  +        +++   
Sbjct: 200 WQTKGRADAILPVAKPLRQFLDAEAHNGEVFVCDDGSGGKFWRDYSSAG--HSFQKMLDQ 257

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           LGL      H  R + AT LL+ G     +Q +L H +L+TT  Y N  +    D + ++
Sbjct: 258 LGLKGPKVLHGFRATVATELLAAGESPVLVQKLLRHQQLTTTLGYLNSQTVEVQDLVNKL 317


>gi|228474636|ref|ZP_04059367.1| integrase [Staphylococcus hominis SK119]
 gi|228271299|gb|EEK12667.1| integrase [Staphylococcus hominis SK119]
          Length = 404

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 79/352 (22%), Positives = 136/352 (38%), Gaps = 52/352 (14%)

Query: 3   GNNLPEIV-SFELLKERQNWLQNLEIERGLSKLTLQS--YECDTRQFLIFLAFYTEEKIT 59
            N  P  + S         W +N ++  G  + T+++  Y       L  +     E I 
Sbjct: 60  NNKTPTTLKSLTFHAACDEWFENYKLTSGSKQSTIRAKTYR------LAHIKERINEDIL 113

Query: 60  IQTIRQLSYTEIRAFI-SKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMR 117
              + +++   I+ +I +  +   I   ++K ++S IKS LK+ +KR  I+  S I N+ 
Sbjct: 114 ---VDKMNAQVIQNYINTSMKENNIKHITIKVNVSLIKSVLKFAQKRYNISDISYIDNVS 170

Query: 118 NLKKSNSLPR-------ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC---- 166
             KK+ +           L   +   L+D   L+    T        + +   Y      
Sbjct: 171 LPKKAVTREEIKAKRENYLEMNEVHKLIDE--LNHKASTSNKGYIKRSYMMTAYITEFQV 228

Query: 167 --GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL---------------------- 202
             GLRI E L+L P+NI      + I G    I    +                      
Sbjct: 229 LNGLRIGELLALQPENIDFKNKKIEIDGTIAWITKDGVRGFKDTTKTEASYRTISITTRS 288

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
              +RK +LE      +D N   +  +F   +G P+        I+   + +G+    + 
Sbjct: 289 CEILRKVMLENKKSTKWDSNFKERNFIFTNSKGSPMPLSSINANIKNAAKNVGIEKDIST 348

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           HT+RHS  + L   G  LR+I   +GH    TT QIY++V  +   D M ++
Sbjct: 349 HTMRHSHISLLSQLGVSLRAIMDRVGHKDYKTTLQIYSHVTEQMDKDMMSKL 400


>gi|170289797|ref|YP_001736613.1| integrase family protein [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170173877|gb|ACB06930.1| integrase family protein [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 262

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 62/288 (21%), Positives = 116/288 (40%), Gaps = 41/288 (14%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GLS  + + Y      FL           ++  + +     +R + + RR   +  ++LK
Sbjct: 11  GLSNSSKRKYRVVFSSFL-----------SMTPLVEAKPIHVRIW-ASRRESHVKRKTLK 58

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           + L  +    +   +  ++ E+  L  + ++     P+  +E    T  +   L    + 
Sbjct: 59  QQLYMLSRLFRIAGREDLSEEARSLA-KEIRSPAPPPKV-DEDLIRTYGEIEKLIEGAK- 115

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
                   A + +L   G+R+ E +SL   ++        ++GKGDK R V       + 
Sbjct: 116 ----PIVRAAIMMLAETGMRVGELVSLKWDDLDLGNRRALVKGKGDKSRYVYFTERTERF 171

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           + E                  RG R  P++    +R++ QL +       T  H +RH+F
Sbjct: 172 LRELER---------------RGSRVFPVSDRTVRRWVSQLLK-------THPHAVRHAF 209

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           A   LS+GG  R +Q ILGH  L TT+IY +++          I +++
Sbjct: 210 AVWFLSSGGSPRVLQHILGHSNLRTTEIYLDISQSLVEREYRLIVERS 257


>gi|298527920|ref|ZP_07015324.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511572|gb|EFI35474.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 278

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 60/305 (19%), Positives = 117/305 (38%), Gaps = 36/305 (11%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  + ++    I  G  + T+++Y+    +F   L          + I Q++  +I  F+
Sbjct: 5   KAVEAFMGYQRINSG--EKTIKNYKILLHKFDGHLGE--------KEISQVTSEDIFNFL 54

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE---K 132
            +  T+     + +   + IK+F  +       T +    + N   +  L ++  +   +
Sbjct: 55  VQ-NTEGQKQSTKRLKFTLIKAFFNF------ITANVDEKLPNPCHTQVLRKSFRDPTGR 107

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q   L  +V+      T   + RN  +L L+   G+RI E L L   ++ D +  +    
Sbjct: 108 QWNILEKDVVDEIIFRTD--NPRNRLMLELMARGGMRIGEVLKLRADDLDDRKLFIDRPK 165

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
            G +  +V +   V + + EY                    R  P+     +  +++  +
Sbjct: 166 SGRQSEVVFIPKKVAERLREYIRSNGIS----------PAERIFPIGYTGARAIVKKSGQ 215

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS-ILGHFRLSTTQIYT-NVNSKNGGDWM 310
            +G+  +   H LR   AT+    G  L  +   IL H  L+TTQ Y   V+      W+
Sbjct: 216 AVGI--NLCPHDLRRHAATYASRAGAPLEIVSKVILRHANLATTQRYLGKVSDTEALHWI 273

Query: 311 MEIYD 315
             IY 
Sbjct: 274 ENIYR 278


>gi|302035718|ref|YP_003796040.1| putative phage integrase [Candidatus Nitrospira defluvii]
 gi|300603782|emb|CBK40114.1| putative Phage integrase [Candidatus Nitrospira defluvii]
          Length = 346

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 108/282 (38%), Gaps = 22/282 (7%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           RQ       +  +     T+ +++   + A+ +KRR +     ++ + L  ++       
Sbjct: 69  RQRDEQCLAHLRDAFGPLTLAEITPKLLAAYKAKRR-ETTKPATVNKELGLVRHGFNVAI 127

Query: 104 KR-KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
           +  +   ++ +  +      N   R ++ ++   L+ N                  ++  
Sbjct: 128 REWEWCRDNPMQRVCMETVRNERDRWISSEEEGRLLANS-----------APWLQDMIVF 176

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
               G+R  E L+L  Q +   +  L + + K  + R VPL   + + +           
Sbjct: 177 ALNTGMRRGEILNLQWQAVDLIRQVLVVMRSKNGEKRTVPLNGRLVELL------RRKAT 230

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
                  +F       ++     R  R   +   L +    H LRH+FAT L   G DL 
Sbjct: 231 MQAKGSFVFSSAASTLVDARNLTRSFRLAAKKAQL-IDVRFHDLRHTFATRLAQAGVDLY 289

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            +Q +LGH   + TQ Y + + ++  + ++ I ++ HP I+Q
Sbjct: 290 KVQRLLGHKSAAMTQRYAHHSPESLREGVL-ILERIHPEISQ 330


>gi|299148773|ref|ZP_07041835.1| integrase [Bacteroides sp. 3_1_23]
 gi|301311632|ref|ZP_07217558.1| integrase [Bacteroides sp. 20_3]
 gi|15072714|emb|CAC47921.1| integrase protein [Bacteroides thetaiotaomicron]
 gi|298513534|gb|EFI37421.1| integrase [Bacteroides sp. 3_1_23]
 gi|300830373|gb|EFK61017.1| integrase [Bacteroides sp. 20_3]
          Length = 411

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/291 (19%), Positives = 108/291 (37%), Gaps = 27/291 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K TL  Y    +    FL   Y  + I ++ +     ++   F+  R  +     ++  
Sbjct: 130 AKGTLLKYRTVYKHLQEFLTIRYHVKDIALKELTPAFISDFEMFL--RTDKHCCTNTVWL 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +  +++ +      +  T         +KK  +    L +++   L++  L +   E  
Sbjct: 188 YVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKEEIRLLMEGKLKNAKQE-- 244

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRI-QGKGDKIRIVPLLPSV 206
                   +       GL  S+  +LT +N     D+   + I + K   +  + LL   
Sbjct: 245 ----LYRDLYLFCAFTGLSFSDMRNLTDENIRTYFDEHEWININRQKTGVVSNIRLLDIA 300

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            + I +Y  LC           +F          G     IR + +  G+    T H  R
Sbjct: 301 NRIIGKYRGLC-------GDGRIFPVPHYNTCLAG-----IRAVAKRCGITKHITWHQSR 348

Query: 267 HSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           H+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +     M  +  +
Sbjct: 349 HTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMENLAAR 399


>gi|312142439|ref|YP_003993885.1| integrase family protein [Halanaerobium sp. 'sapolanicus']
 gi|311903090|gb|ADQ13531.1| integrase family protein [Halanaerobium sp. 'sapolanicus']
          Length = 380

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 54/332 (16%), Positives = 122/332 (36%), Gaps = 50/332 (15%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  + WL++  + + LS  T   YE       + +  +    +    ++++    I+++ 
Sbjct: 66  KYLKRWLEDYALPK-LSPTTYAGYE-------MIVTKHIIPALGALKLKEVKPLHIQSYQ 117

Query: 76  SKR--------RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
           +K+        +   +  +++ +    +    K     ++ + + +  +          R
Sbjct: 118 NKKLKKGRLDGKEGGLSKKTVLQHHRILNRAFKQAVLWQLISYNPVKAVPAPSPEKPEIR 177

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L+ ++   L+           K  ++     +Y+    G+R  E L L   +I  +  T
Sbjct: 178 TLSIEEVEHLL----------NKAGNSWLYYFIYVAVNTGMRRGELLGLGWNHIDFNGKT 227

Query: 188 LRIQG------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP------- 228
           +++              KG K +    + S+ +   +         N N  L        
Sbjct: 228 IQVTRTLVKTKKTGMVYKGPKNKSSRRVISIAEDDTKILKKLKIKQNENKLLFGPEYQNN 287

Query: 229 --LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
             +F    G  + P       + L + +GL  S + H LRH+ AT +L  G   + +Q  
Sbjct: 288 NLVFCKSDGSKIYPNTTTNRFKLLAKRIGLN-SVSLHDLRHTHATLMLQAGVHPKVVQER 346

Query: 287 LGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQT 317
           LGH  ++TT   Y++V      + + + Y + 
Sbjct: 347 LGHSTITTTLDTYSHVIPSMQKESVDK-YKKF 377


>gi|120602084|ref|YP_966484.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
 gi|120562313|gb|ABM28057.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
          Length = 372

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 102/267 (38%), Gaps = 19/267 (7%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKIT 108
              +      ++ +  +   +I  F ++   Q+   +++K +L  ++   + +    +  
Sbjct: 106 YRLWLAPAFGMKKMAGVRPVDIEEFKNRMLAQR-SPQTVKHALGLLRRVYRKMAAWGEYK 164

Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
            +   +++   K  N   R L   +A+ LV+ +        + +   + +++ L    GL
Sbjct: 165 GDIPTVSVPMPKVDNGRLRFLTPDEAVRLVEAL------RKRSVLWADVSLVSL--HAGL 216

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
           R+ E L L   ++  D   L +       R VPL       +L              +  
Sbjct: 217 RLDEILGLQACHVDIDNRLLHVMDAKCGTRTVPLADRGLCEMLRQRKAAC----SGAEDF 272

Query: 229 LFRGIRGKPLN--PGVFQRYIRQLRRYLGLPL---STTAHTLRHSFATHLLSNGGDLRSI 283
           +F+   G+ +N       R I+ L    G+         HTLRH+F + +   G  L  I
Sbjct: 273 VFKNRNGERINNISQTVVRVIQDLGFNHGITDRRHKVVFHTLRHTFGSWMAQRGVPLYVI 332

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWM 310
             ++GH  L  T+ Y+ +  +   D +
Sbjct: 333 GELMGHSTLEMTRRYSKLCPETKVDAL 359


>gi|295108411|emb|CBL22364.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 426

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 137/336 (40%), Gaps = 44/336 (13%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ- 81
           + L+ + G+ + T Q Y    R          +E    +TIR +  ++ + F+ K + + 
Sbjct: 94  RYLKTKTGVRQSTKQGYVTVQRLLA-------KESFGKKTIRSVKTSDAKLFLIKLQQED 146

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLKKSNSLPR-ALNEKQALTLVD 139
                S+      ++   +      I  ++     +  +  ++++ R A+++ Q    + 
Sbjct: 147 GKSYSSIHTIRGVLRPAFQMAMDDDILVKNPFGFQLAGVLVNDAVTREAISKDQMRKFLK 206

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            V          +  +   ++Y+L+  G+RISE   LT ++I  ++ T+ I  +  +   
Sbjct: 207 FV------HDDVVYCKYYEVVYILFHTGMRISEFCGLTLKDIDLEKMTVNIDHQLQRTSD 260

Query: 200 VPLLPSVRK-------------------AILEYYDLCPFDLNLN-IQLPLFRGIRGKPLN 239
           +  +    K                   AI+E  +    +  ++     LF    G PL 
Sbjct: 261 MRYIIETTKTDAGTRVLPITEDVAQMFQAIIEDRNAPKVEKAIDGYSGFLFYDDNGMPLV 320

Query: 240 PGVFQRYI-RQLRRYLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              +Q      + RY  +      + T H  RH++ +++  +G + +++Q ++GH  +S 
Sbjct: 321 AMHWQHRFNHMVGRYNDIYRVQMPNITPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISV 380

Query: 295 TQ-IYTNVNSKNGGDWM--MEIYDQTHPSITQKDKK 327
           T  +YT++   +  + +  ME + +    + QK +K
Sbjct: 381 TMNVYTHIGFDDAEEELKRMEEFRKAQAEVEQKKEK 416


>gi|260599046|ref|YP_003211617.1| Integrase [Cronobacter turicensis z3032]
 gi|260218223|emb|CBA33120.1| Integrase [Cronobacter turicensis z3032]
          Length = 339

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 63/332 (18%), Positives = 116/332 (34%), Gaps = 61/332 (18%)

Query: 8   EIVSFE--LLKER--QNWLQNLEIERGLSK-----LTLQSYECDTRQFLIFLAFYTE--E 56
           E ++FE   + E   + WL   E  R LS+      +L  Y          +A  +    
Sbjct: 34  EAIAFENFTMDEVNKKPWLGEKEDRRRLSEVIEQWHSL--YGQTLADPKRLMAKLSIICN 91

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKI-----------GDRSLK---RSLSGIKSFLKYL 102
            +      +L+  +   +   R   ++             R++    R+LS +  F    
Sbjct: 92  GLGNPIASELTAGDFTKYREARLKGEVRSEDGTLMSPVKPRTVNLEQRNLSSV--FGTLK 149

Query: 103 KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
           K    +  + +  +   K +      L  ++   L+D      S            I  +
Sbjct: 150 KLGHWSAPNPLAGLPTFKIAEGELAFLTPEEIKRLLDACAESQS-------PCLLMIAKI 202

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
               G R SEA +L   + +        + KG K R VP+   +   +            
Sbjct: 203 CLATGARWSEAENLQ-GHQLSKYRITYTKTKGKKNRTVPISQDLYDEL------------ 249

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDL 280
                P  RG    P      ++   +  +  G+  P     H LRH+FA+H + NGG++
Sbjct: 250 -----PKNRGKLFTPC-----RKAFERAVKRAGIDLPEGQCTHVLRHTFASHFMMNGGNI 299

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             ++ ILGH  +  T IY + +  +  D + +
Sbjct: 300 LVLKEILGHADIKMTMIYAHFSPDHLEDAVTK 331


>gi|258647348|ref|ZP_05734817.1| integrase [Prevotella tannerae ATCC 51259]
 gi|260852873|gb|EEX72742.1| integrase [Prevotella tannerae ATCC 51259]
          Length = 409

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 61/287 (21%), Positives = 112/287 (39%), Gaps = 25/287 (8%)

Query: 32  SKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K T  +Y    R    F+   +  + I    + +    + ++F+     + +   + + 
Sbjct: 130 AKGTYPAYFYTRRTLAEFIQKKFHSKDIAFGQLTEQFIHDYQSFVVD--DKGLAIETSRH 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L+ IK   +   K          +    +     P+AL+ +    + D  L+   H + 
Sbjct: 188 YLAIIKKVCRRAYKEGYADRCFFAHFSLPQPKEKTPKALSRESFEKIRD--LVIPEHRSS 245

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRI---QGKGDKIRIVPLLPSV 206
            I AR+          G   ++A+S+T  N+  DD   L +   + K +    V LLP  
Sbjct: 246 HILARD--FFLFACYTGTAYADAVSVTRDNLFTDDNGGLWLKYRRKKNELHACVKLLPEA 303

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              I +Y D        + +  LF  +    +     +R ++ L     +    T H  R
Sbjct: 304 LALIEKYRD--------DDRQTLFPMLHYPNM-----RRLMKCLAVLADIKEDLTYHAGR 350

Query: 267 HSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           HSFA+ + L  G  + +I  +LGH  L TTQ+Y  V  K   + M +
Sbjct: 351 HSFASLITLEAGVPIETICKMLGHSNLQTTQVYAKVTPKKLFEDMDK 397


>gi|153815865|ref|ZP_01968533.1| hypothetical protein RUMTOR_02110 [Ruminococcus torques ATCC 27756]
 gi|145846890|gb|EDK23808.1| hypothetical protein RUMTOR_02110 [Ruminococcus torques ATCC 27756]
          Length = 400

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/330 (14%), Positives = 105/330 (31%), Gaps = 59/330 (17%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
             K T++       +   +     +  I    ++ +    ++ FI++     +   ++  
Sbjct: 79  YKKKTVK--MTTIYKNHSYYNARVKNSIGKMYLQDIKTYHVQKFINELIDSGLAHGTVSN 136

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
               +          +   ++  + +    K     R L  ++               T 
Sbjct: 137 IRFMLSDMFDKAVLSEYIRKNPCIAVEMPPKVKKERRVLTREEQKKFF----------TF 186

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK-------------- 196
                +  +L      G RI E L L  ++   ++  + I                    
Sbjct: 187 ASSYIHINVLKFAVTTGCRIGEVLGLKWEDCDFEKREITINKTIHYSKASSPVEGSKFFY 246

Query: 197 --------IRIVPLLPSVRKAIL---------EYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
                    R++P+   V + +          + +    +  +   Q  +F    G P+ 
Sbjct: 247 TTAKTISSNRVIPMTDEVYEILQNQKIKQTEQKMWKRSIWKQHKEFQNLVFTCSDGSPVY 306

Query: 240 PGVFQRYIRQLRRYLG-LPLST--------------TAHTLRHSFATHLLSNGGDLRSIQ 284
                  I+     +  + +                T HTLRH++AT    NG D + +Q
Sbjct: 307 YYNVNSAIKDYVAKINVIEIELAKEEKREPKIFELFTCHTLRHTYATRCYENGVDQQVVQ 366

Query: 285 SILGHFRLS-TTQIYTNVNSKNGGDWMMEI 313
            +LGH  L+ TT +YT+V+ +   + + E+
Sbjct: 367 KLLGHSTLAMTTDLYTHVSEEKKKEEVAEL 396


>gi|319893397|ref|YP_004150272.1| Tn916 ORF3-like transposon integrase [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317163093|gb|ADV06636.1| Tn916 ORF3-like transposon integrase [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 405

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 108/295 (36%), Gaps = 35/295 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +    ++K+ +++I  +  ++ + +  +        +++      +K+      +     
Sbjct: 110 MDILKKDKLGVRSIDSIKPSDAKEWAIRMSENGYAYQTINNYKRSLKASFYIAIQDDCVR 169

Query: 110 ESNI-LNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     ++ +   +++P+  L E+Q   L+         +     ++N   + +L   G
Sbjct: 170 KNPFDFQLKAVLDDDTVPKTVLTEEQEEKLL------AFAKADKTYSKNYDEILILLKTG 223

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAIL 211
           LRIS    LT  ++  +   + I                       R VP++    +A  
Sbjct: 224 LRISGFGGLTLPDLDFENRLVNIDHQLLRDTEIGYYIETPKTKSGERQVPMVEEAYQAFK 283

Query: 212 EYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTA 262
                   D  + I      LF   +  P     +   ++ L +         LP   T 
Sbjct: 284 RVLANRKNDKRVEIDGYSDFLFLNRKNYPKVASDYNGMMKGLVKKYNKYNEDKLP-HITP 342

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQ 316
           H+LRH+F T+  + G + +++Q I+GH  ++ T   Y +    +    M  +  +
Sbjct: 343 HSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMKRLNKE 397


>gi|291531297|emb|CBK96882.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 476

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/274 (19%), Positives = 110/274 (40%), Gaps = 43/274 (15%)

Query: 63  IRQLSYTEIRAFISKRRT-----------QKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111
           + +LS ++++ F +K +T           + + DR+++   +  ++ L+   +  +   +
Sbjct: 115 LNRLSQSDLQQFYAKEKTDGRKLHAKTYGKGLSDRTIRGIHANCRTALQRAVQEGLIRTN 174

Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
             +  + L K     + L + + +  +        H+ K        +L L  G G+R  
Sbjct: 175 PAVGCKLLPKKAREMQVLTQNEIIRFL--------HQAKEEGCYELFLLEL--GTGMRRG 224

Query: 172 EALSLTPQNIMDDQSTLRIQ---------------GKGDKIRIVPLLPSVRKAILEYYDL 216
           E L+L   ++      LRI+                    IR V L PS+ K ++ Y + 
Sbjct: 225 EILALKWSDLNFATGELRIERQVYIIKAEVIISAPKTKASIRTVILPPSLLKTLVAYKET 284

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
              +              G+P NP   ++ ++ +    G       H LRH+FAT  L +
Sbjct: 285 VDSEWMFPS-----PTDNGRPRNPSSVRKRLQLILERAG-CKKVRFHDLRHTFATMALEH 338

Query: 277 GGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDW 309
           G D++++ + +GH   +TT  IY+++        
Sbjct: 339 GMDVKTLSATIGHVSSATTLDIYSHITDTMQRQA 372


>gi|189463323|ref|ZP_03012108.1| hypothetical protein BACCOP_04040 [Bacteroides coprocola DSM 17136]
 gi|189429942|gb|EDU98926.1| hypothetical protein BACCOP_04040 [Bacteroides coprocola DSM 17136]
          Length = 420

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 100/263 (38%), Gaps = 25/263 (9%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           + I+++ +  +    +RA +   +   I   +     S +K+ LK     +  T      
Sbjct: 173 KTISVKLLEDIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFVDEYLTVDISAK 232

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           ++ +    +   AL   +   LVD         T   D             GLR S+  +
Sbjct: 233 VKGITNIETPRVALTMNEVQMLVD---------TPCKDDVLKRAFLFSILTGLRHSDIQA 283

Query: 176 LTPQNIMDDQST----LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           L  + I          + IQ K  +    P++    +           +   N +  +F 
Sbjct: 284 LKWKQIQQTSKGTWQAIVIQQKTKRPDYKPVIQQALQL--------CGERPSNDEALVFE 335

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           G+     +     R ++      G+    T H  RHS+A+ LL NG D+ +I+S++GH  
Sbjct: 336 GLT----DASWISRPLKAWIEASGIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTN 391

Query: 292 LSTTQIYTNVNSKNGGDWMMEIY 314
           + TTQIYT++ ++        ++
Sbjct: 392 VKTTQIYTHIVNEQKEKAANTLH 414


>gi|227888721|ref|ZP_04006526.1| bacteriophage integrase [Lactobacillus johnsonii ATCC 33200]
 gi|227850748|gb|EEJ60834.1| bacteriophage integrase [Lactobacillus johnsonii ATCC 33200]
          Length = 386

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 82/246 (33%), Gaps = 35/246 (14%)

Query: 90  RSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRA---LNEKQALTLVDNVLLHT 145
           R +  + S  L Y     +  ++ +  +   K            ++++    +D      
Sbjct: 138 RKVYSLSSKVLDYAVNNDLIVKNPMKRVIKPKMQKDKREFTNFYSKEELNKYLDACKQKK 197

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK------------ 193
           +               LL   G+R  EAL+L   +I  +  T+RI               
Sbjct: 198 NPRV-------YLFFRLLAYTGMRKGEALALKWSDIDFENETIRINKTLSLGTHNSLVIG 250

Query: 194 ----GDKIRIVPLLPSVRKAILEYYDLCPFDL------NLNIQLPLFRGIRGKPLNPGVF 243
                   R + +       + E+      +L       L     LF     + + P + 
Sbjct: 251 TPKTKASNRTIQVDEQTIYYLQEWRKRQRKELFKVGFNALTDDQLLFSNGNNQLIRPWLV 310

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVN 302
           Q + + + +   L    T H  RH+ A+ L   G  ++ ++  LGH  ++TT  +YT+V 
Sbjct: 311 QYWNKTIAKDARL-KHITVHGFRHTHASLLFEAGTPMQDVKERLGHSDITTTMNVYTHVT 369

Query: 303 SKNGGD 308
                 
Sbjct: 370 KSEKKK 375


>gi|150006208|ref|YP_001300952.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
           8482]
 gi|149934632|gb|ABR41330.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
           8482]
          Length = 483

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/291 (19%), Positives = 108/291 (37%), Gaps = 27/291 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K TL  Y+   +    FL   Y  + I ++ +     ++   F+  R  +     ++  
Sbjct: 202 AKGTLAKYKTVYKHLQEFLNIRYHVKDIALKELTPAFISDFEMFL--RTDKHCCTNTVWL 259

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +  +++ +      +  T         +KK  +    L + +   L+D  L +   E  
Sbjct: 260 YVCPLRTMVFIAINNEWLTHDPFREYE-IKKEETTRSFLTKDEIRLLMDGKLKNAKQE-- 316

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRI-QGKGDKIRIVPLLPSV 206
                   +       GL  ++  +LT +N     DD   + I + K   +  + LL   
Sbjct: 317 ----LYRDLYLFCAFTGLSFADMRNLTEENIRTYFDDHEWINISRQKTGVVSNIRLLDIA 372

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           ++ I +Y  LC           +F                IR + +  G+    T H  R
Sbjct: 373 KRIIDKYRGLC-------EDGRIFPVPHYM-----TCLHGIRAVAKRCGITKHITWHQSR 420

Query: 267 HSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           H+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +     M  +  +
Sbjct: 421 HTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMESLAAR 471


>gi|288800951|ref|ZP_06406408.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332412|gb|EFC70893.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 383

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/285 (20%), Positives = 105/285 (36%), Gaps = 25/285 (8%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           K T++++    + F+ FL     E    +   +      R F+         + ++   L
Sbjct: 74  KATVRAFRDSKKSFVQFLKTRRNEDCLPKEADKDLIESYRLFM--LSDLGNKESTVSNRL 131

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +   ++  ++ +   E     +        +     E+ ALT  D   L +    + +
Sbjct: 132 RHLHQVIRKAQQERYIREDPFELID-------IETPTYERNALTSDDLHKLLSYRPHRSV 184

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           D     I  L    GL  S+   L   ++    D +  + +     + R +  L  + + 
Sbjct: 185 DNHCRLIFLLGCFTGLAFSDLKKLRMDDVYTLDDGRRYISLCRTKTQNRSIVPLLPIAEE 244

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS--TTAHTLRH 267
           IL   +    +  L  + P              F R IR +    GLP     T+HT RH
Sbjct: 245 ILTIVNDGRKEGLLFREFP----------TNSHFNRKIRDIIIKAGLPSHTEATSHTARH 294

Query: 268 SFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +FAT   L NG  + ++  +LGH  +STT++Y  V+       M 
Sbjct: 295 TFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKSKIAREMQ 339


>gi|288869960|ref|ZP_06112412.2| putative integrase - phage associated [Clostridium hathewayi DSM
           13479]
 gi|288868962|gb|EFD01261.1| putative integrase - phage associated [Clostridium hathewayi DSM
           13479]
          Length = 424

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 62/299 (20%), Positives = 111/299 (37%), Gaps = 50/299 (16%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLS 93
           T+ SY  D R                  I+ L  + I +F S   +++K+        LS
Sbjct: 142 TVNSYIGDIR------------------IKDLRMSHIESFRSYMIKSKKLAQ--YNLCLS 181

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            IK+ ++Y  ++ I  +     M+ +K      RAL  ++ L            E   +D
Sbjct: 182 RIKAIVRYAVQKDIMAKDITAGMKRVKIDKKPKRALTSEERLLF----------EITDLD 231

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK--GDKIRIVPLLPSVRKA-- 209
           +     + LL   GLR  EAL+L  ++I   ++ + +       K     L    + A  
Sbjct: 232 SFERCFINLLLYTGLRKCEALALDVKDIDLKKNQIYVSKTLVASKKINTCLQEYTKTAAG 291

Query: 210 -----ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPL 258
                I        F+        LF    G+ ++         ++ + +       L  
Sbjct: 292 LRQIPIPAPLAKILFEFIKGRSGILFPSKSGRYIS--TLDYKWEKILKKVQAVSSTPLSD 349

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGG-DWMMEIYD 315
             T H  RH++A+ L   G D++  Q +LGH  + TT   YT+    +   D + + Y+
Sbjct: 350 DITPHIFRHTYASDLYKAGVDIKQAQYLLGHDDIKTTLDTYTHFGFFDVEPDKLEDYYN 408


>gi|302345565|ref|YP_003813918.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302148959|gb|ADK95221.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 267

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/297 (16%), Positives = 110/297 (37%), Gaps = 35/297 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++ Q L+ E  LS  T+ +Y      F    + +  E + +    Q+           
Sbjct: 2   VKSFKQQLKKEE-LSDNTITAYLYAVEDFERKYSCFNRENLLLYKADQI----------- 49

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              ++   +++   +  +  +L+++ K         L +++LK           +  ++ 
Sbjct: 50  ---EQFKPKTVNLRIQALNKYLEFIGK-------PRLRLKSLKIQQKT----YLENVISN 95

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            D   L +  +    +     ++  L   G R+SE +    +++        I  KG K+
Sbjct: 96  ADYQYLKSKLKEGEEEVW-YFLVRFLGATGARVSELIQFKVEHVRV--GYFDIYTKGGKV 152

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R + +   +      +      DL       LF    GK + P   +  +++     G+ 
Sbjct: 153 RRIFIPQDLCMETKAWLKRANIDLG-----YLFLDKHGKQITPRAIRHKLQRFAHQWGIN 207

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                 H+ RH +A + L +  D+  +  ++GH  + TT+IY    S      + +I
Sbjct: 208 SKVMHPHSFRHRYAKNFLESFNDVVLLADLMGHESIETTRIYLRRTSNEQQAIVDKI 264


>gi|228943482|ref|ZP_04105925.1| Integrase-recombinase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228976122|ref|ZP_04136621.1| Integrase-recombinase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228783597|gb|EEM31677.1| Integrase-recombinase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228816192|gb|EEM62374.1| Integrase-recombinase [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 390

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 65/313 (20%), Positives = 118/313 (37%), Gaps = 34/313 (10%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE--------KITIQTIRQLSYTEIRAF 74
           ++++ ++   + T +SY  +   F   +    EE        +     ++ L    IR +
Sbjct: 75  KDMDEKKNRKEDTKKSYISEIVSFCQCMVQRAEEFELNGEEVQKKESLLKTLQPWHIRKY 134

Query: 75  ISKRRT-------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--NLKKSNSL 125
            S  +              +L +    I+SFLK+L       +     ++  N+ + +  
Sbjct: 135 NSWLKRVENGRNGDTYAVATLAKKTVLIRSFLKHLHLFSYIEKPLHEELQRANVNEQDRP 194

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDD 184
            R L+  + + ++           +     N  IL  L   G RI E  +   ++   D 
Sbjct: 195 NRDLSYDEVMKILGFY-------KERGHLVNYTILLALASTGARIQELCNARVKDLHYDG 247

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGV 242
           +  L++ GKGDK+R + +   + + I E          L    + PLF   RG   N   
Sbjct: 248 KYWLKVTGKGDKVRELFISEHLYQCICEMRRRRGCQTVLEKGDESPLFINQRGNTYNSKT 307

Query: 243 FQRYIRQLRRYLGLPL------STTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTT 295
               +  + +   L          TAHT RH+FA   +  G  DL  +   LGH  + TT
Sbjct: 308 LSNQVTDMVKKTNLEFLLYRENPVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTT 367

Query: 296 QIYTNVNSKNGGD 308
           +IY   + K   +
Sbjct: 368 KIYLEKHMKRKNN 380


>gi|237711307|ref|ZP_04541788.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|325299619|ref|YP_004259536.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|229454002|gb|EEO59723.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|324319172|gb|ADY37063.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 411

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/287 (19%), Positives = 108/287 (37%), Gaps = 29/287 (10%)

Query: 32  SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K TL+ Y    +    FL   Y  + I ++ +     ++   F+  R  +     ++  
Sbjct: 130 AKGTLEKYRIVYKHLQEFLDIRYHVKDIALKELTPAFISDFEMFL--RTDKHCCTNTVWL 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +  +++ +      +  T         +KK  +    L +++   L++  L +   E  
Sbjct: 188 YVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKEEIRLLMEGKLKNAKQE-- 244

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRI-QGKGDKIRIVPLLPSV 206
                   +       GL  S+  +LT +N     D+   + I + K   +  + LL   
Sbjct: 245 ----LYRDLYLFCAFTGLSFSDMRNLTEENIRTYFDEHEWININRQKTGVVSNIRLLDIA 300

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            + I +Y  LC                R  P+ +       IR + +  G+    T H  
Sbjct: 301 NRIIGKYRGLCE-------------NGRIFPVPHYNTCLAGIRAVAKRCGITKHITWHQS 347

Query: 266 RHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           RH+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +     M 
Sbjct: 348 RHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDME 394


>gi|49087894|gb|AAT51509.1| PA0728 [synthetic construct]
          Length = 328

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 60/317 (18%), Positives = 116/317 (36%), Gaps = 32/317 (10%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ME     E  + +   E   W    +  R LS+L    YE   +            ++  
Sbjct: 31  MEAQQF-EATARQKCAENPCWTLRPKDRRRLSELVELWYELHGQTLSNGHRCVAILRLVA 89

Query: 61  QTIRQ-----LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNIL 114
           + +       L   ++    S++    +  ++    L  +KS    L++  +   E+ + 
Sbjct: 90  KDLGDPVAVSLEPAKVARLRSRQIANGMSGKTANNRLGYLKSMYNELRQLGVIDHENPVG 149

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            MR LK        L + Q   L+  +   T+            +  +    G R  EA 
Sbjct: 150 RMRPLKLQERPLSYLTKHQVSELLTALDARTTSPHP------KMVARICLATGARWGEAQ 203

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +LTP+  +   + +    K  ++R VP+   +   +  ++                    
Sbjct: 204 ALTPE-RLKGNTVIFANTKSKRVRSVPISEELGADLRRHW------------------QT 244

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
             P    +    +  L   + LP    +H LRH+FA+H + NGG + ++Q ILGH  LS 
Sbjct: 245 HGPFTNCLGVFRLVLLSTSIKLPKGQASHVLRHTFASHFIMNGGHIVTLQHILGHASLSM 304

Query: 295 TQIYTNVNSKNGGDWMM 311
           T  Y +++  +  + + 
Sbjct: 305 TMRYAHLSQDHLSEAVR 321


>gi|255012236|ref|ZP_05284362.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313150077|ref|ZP_07812270.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313138845|gb|EFR56204.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 403

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 55/283 (19%), Positives = 106/283 (37%), Gaps = 36/283 (12%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKRS 91
           K T+         F+ +  +Y    I +    +L+   +  +    R +  +   +++  
Sbjct: 134 KHTIS--RTHVANFIKY--YYKRNDIGM---NELTEDFLNQYCIYLRNEVGVQQSTIRLY 186

Query: 92  LSGIKSFLKYLKKRKITTESNILN--MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
            + ++S + +  K  +       N  +    K       L EK+  TL+ +       + 
Sbjct: 187 CAPLRSIVTHAHKNGLIPRDPFANCYVSGGTKER---EFLTEKEVQTLMSHRF----DDP 239

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSV 206
                R+  I   L   G+   +  +LT  N++    +L I   + K +    V L+ S 
Sbjct: 240 AMTVVRDIFIFGCL--TGISFIDIKNLTTDNLVTINGSLWISSVRQKTNIPFRVKLMESA 297

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYLGLPLSTTAHTL 265
            K I  Y              P  RG R        +   + +Q+    G+    T H  
Sbjct: 298 CKIIDRY-------------EPFRRGKRLFNFYRNGWTNVLLKQIAAECGINKHLTFHMS 344

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           RHS+A   +SNG  + S+  +LGH +++TTQ Y  + ++    
Sbjct: 345 RHSYAVMAISNGMPIESVSKVLGHTKITTTQHYAKITTEKLDK 387


>gi|164521191|gb|ABY60457.1| phage integrase [Burkholderia andropogonis]
          Length = 290

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/288 (20%), Positives = 102/288 (35%), Gaps = 35/288 (12%)

Query: 54  TEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI 113
           +     +   R  +  E R F        +  RS   SLS + +  ++L +++    +  
Sbjct: 6   SPRSRWVSPPRPRTSPEWRPF-----AGGLSARSAAHSLSVLGALFRWLIEQRYVFANPF 60

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHT-SHETKWIDARN-------SAILYLLYG 165
             +   K   + P  L+  +A +  +  L+ T +   +W              +L   Y 
Sbjct: 61  AGL---KVRGAAPALLDTSRAFSEGEWALVRTVADGLEWSYGWEPAAAQRLRFVLDFAYA 117

Query: 166 CGLRISEALSLTPQNIMDD---QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
            GLR SE +  T   I  D   +  L + GKG +   V L P  R A+  Y         
Sbjct: 118 TGLRASELVHATLGAIKIDASDERWLHVIGKGARASRVTLPPLARVALDRYLMQRGLPTT 177

Query: 223 LNIQLPLFRGIRGKP----LNPGVFQ----RYIRQLRRYLGLP--------LSTTAHTLR 266
                P+   +        +N         R+       +G             + H +R
Sbjct: 178 PAKWEPVTPLVASLAGEAGINRARLWVVMKRFFATAAEVIGEGSPAVAETLRRASPHWMR 237

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           H+ ATH L  G +L +++  L H  LSTT +Y + +       M  ++
Sbjct: 238 HTHATHALQGGAELTAVRDNLRHASLSTTSMYLHSDDVKRARQMAPVF 285


>gi|15595925|ref|NP_249419.1| bacteriophage integrase [Pseudomonas aeruginosa PAO1]
 gi|9946613|gb|AAG04117.1|AE004508_2 probable bacteriophage integrase [Pseudomonas aeruginosa PAO1]
          Length = 327

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 60/317 (18%), Positives = 116/317 (36%), Gaps = 32/317 (10%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ME     E  + +   E   W    +  R LS+L    YE   +            ++  
Sbjct: 31  MEAQQF-EATARQKCAENPCWTLRPKDRRRLSELVELWYELHGQTLSNGHRCVAILRLVA 89

Query: 61  QTIRQ-----LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNIL 114
           + +       L   ++    S++    +  ++    L  +KS    L++  +   E+ + 
Sbjct: 90  KDLGDPVAVSLEPAKVARLRSRQIANGMSGKTANNRLGYLKSMYNELRQLGVIDYENPVG 149

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            MR LK        L + Q   L+  +   T+            +  +    G R  EA 
Sbjct: 150 RMRPLKLQERPLSYLTKHQVSELLTALDARTTSPHP------KMVARICLATGARWGEAQ 203

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +LTP+  +   + +    K  ++R VP+   +   +  ++                    
Sbjct: 204 ALTPE-RLKGNTVIFANTKSKRVRSVPISEELGADLRRHW------------------QT 244

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
             P    +    +  L   + LP    +H LRH+FA+H + NGG + ++Q ILGH  LS 
Sbjct: 245 HGPFTNCLGVFRLVLLSTSIKLPKGQASHVLRHTFASHFIMNGGHIVTLQHILGHASLSM 304

Query: 295 TQIYTNVNSKNGGDWMM 311
           T  Y +++  +  + + 
Sbjct: 305 TMRYAHLSQDHLSEAVR 321


>gi|20808517|ref|NP_623688.1| integrase [Thermoanaerobacter tengcongensis MB4]
 gi|34222921|sp|Q8R890|XERCL_THETN RecName: Full=Tyrosine recombinase xerC-like
 gi|20517139|gb|AAM25292.1| Integrase [Thermoanaerobacter tengcongensis MB4]
          Length = 391

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/276 (20%), Positives = 104/276 (37%), Gaps = 38/276 (13%)

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            + +K   Q    +++K   + +K+F  Y        ++     + +      P    E 
Sbjct: 118 RYYNKLYQQGKSSKTIKALNNFLKTFFNYAVDEGYLAKNPCTGKKIVIPGT--PEEKIET 175

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ- 191
           +  T  D  +       K    R  A+  L +G GLR  E L L   +I  ++  LR+Q 
Sbjct: 176 EIETFSDEEIKKIKEALK--GHRLKALFLLAFGTGLRQGELLGLKWTDIDFEKKELRVQR 233

Query: 192 -----------------------GKGDKIRIVPLLPSVRKAILEYYDLCPFD-------- 220
                                     + IR VP+  S+   + E+ +    +        
Sbjct: 234 MIKQVTIIDEKGNRKYKTIEQIPKTKNSIRTVPIPSSLIPMLKEHRNRQREEKLKAGSVY 293

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
           LN   +  +F    G  ++     +  +++    G+P     H +RH++AT L   G  L
Sbjct: 294 LNDVEKGYVFTTELGNTIDASNLLKTYKKILNRAGVPYR-KFHAIRHTYATKLFERGVPL 352

Query: 281 RSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYD 315
           +++  +LGH  +S T  IYT+V  K   + +  + D
Sbjct: 353 KTVSELLGHSNISITANIYTHVIPKQKTNAVETLND 388


>gi|237708454|ref|ZP_04538935.1| transposase [Bacteroides sp. 9_1_42FAA]
 gi|229457675|gb|EEO63396.1| transposase [Bacteroides sp. 9_1_42FAA]
          Length = 430

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/298 (17%), Positives = 114/298 (38%), Gaps = 30/298 (10%)

Query: 31  LSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSL 88
            S +T+  Y+   ++   F+ ++Y +E++T     +L+   I AF    +T+  +   ++
Sbjct: 148 YSPVTINRYKNVVKKLQQFIPSYYGKEEVTFH---ELTPEFIHAFDIYLKTEGRLCRNTI 204

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R +   K F      ++   ++     + +++  + P  L   +   ++         E
Sbjct: 205 VRYMKCFKKFTNMALAKEWMRKNPFYGYK-MEQDETDPVFLTYDELQAVMKKKFTIPRLE 263

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLT--------PQNIMDDQSTLRIQGKGDKIRIV 200
                     I       GL  S+  SL           +    +  ++++ +     I 
Sbjct: 264 LV------RDIFVFACFTGLAFSDVASLNNEHLVQDNLGDWWIRKGRVKLERRRKASSIS 317

Query: 201 PLLP-SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
            +    V  AILE Y   P  +     LP+    +           Y++++  + G+  +
Sbjct: 318 NIPLLPVPLAILEKYREHPACIKKGCCLPVMCNQKM--------NSYLKEIADFCGIKKN 369

Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            T H  RH+F T + L+N   L+ +  +LGH     TQ Y  V + +    M  + ++
Sbjct: 370 LTTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKAAMNNVKER 427


>gi|586103|sp|P37375|TNPE_STAAU RecName: Full=Transposase B from transposon PsiTn554
 gi|152975|gb|AAA26607.1| 630 codon reading frame resembling tnpB of Tn554; transcription or
           translation signals upstream of the reading frame
           removed by the deletion noted above; presumed to be
           vestigial and not expressed; putative [Staphylococcus
           aureus]
          Length = 630

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 60/286 (20%), Positives = 103/286 (36%), Gaps = 24/286 (8%)

Query: 38  SYECDTRQFL-IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           SY  D  Q L  F  F   +   +Q + QL+  EI A++S+     I   ++   +S ++
Sbjct: 236 SYVSDIAQKLKEFFNFLDIKFKHVQRVHQLTRVEIEAYLSELNMMGIKPSTITGRISILE 295

Query: 97  SFLKYLKKRKITTESNILNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
                L + +     + L +      K   + PR ++E   L  +++ L           
Sbjct: 296 GLFSTLHRLEWDDVPSKLLIYPEDYPKIPRAKPRFIDE-FVLEQLNSHLDKLPE------ 348

Query: 154 ARNSAILYLLYGCGLRISEALSLT----PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              + +  ++  CG+RISE  +L      ++          Q K  K  IVP+   V   
Sbjct: 349 -YIATMTMIVQECGMRISELCTLKKGCLLEDKDGYYFLKYYQWKMKKEHIVPISKEVV-- 405

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST------TAH 263
           +L                 LF    G PL    F+  + +L     +           AH
Sbjct: 406 LLIKVREDKVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKLGEIYRFHAH 465

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             RHS  T  ++NG     +Q  LGH     T  Y ++  +   + 
Sbjct: 466 AFRHSVGTRTINNGVPQHIVQKFLGHESPEMTSRYAHIFDETLKNE 511


>gi|134291577|ref|YP_001115346.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134134766|gb|ABO59091.1| phage integrase family protein [Burkholderia vietnamiensis G4]
          Length = 563

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 74/346 (21%), Positives = 130/346 (37%), Gaps = 45/346 (13%)

Query: 5   NLPEIVSFE--LLKERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           +L E  + +    KE +  +    +ERG  LS LT      D   +  FL   T  +  +
Sbjct: 228 SLHEAAATQRAYRKEAERLILWAIVERGRALSSLT----TDDAIAYRGFLRRPTPRERWV 283

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
              R     E R F     T  +  RS   +L+ + +  ++L +++    +    +   K
Sbjct: 284 GPSRPRHSIEWRPF-----TGALSPRSAAYALNVLSALFRWLIEQRYVLANPFAGV---K 335

Query: 121 KSNSLPRA-LNEKQALTLVDNVLLHT-SHETKWIDARN-------SAILYLLYGCGLRIS 171
             +  PRA L+  +  + V+  L+ T +   +W    +         +L   Y  GLR S
Sbjct: 336 VKSQAPRAGLDVSRGFSEVEWPLIRTLADGLEWSYGWSVPAAQRLRFLLDFGYATGLRAS 395

Query: 172 EALSLTPQNIMDDQS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD---LNLNI 225
           E +S T  +I  D+     L + GKG K   V L    R A+ +Y          +  N 
Sbjct: 396 ELVSATLADIRRDEHGDHWLHVLGKGGKRGKVTLPALARTALDQYLVQRGLPVTPIRWNP 455

Query: 226 QLPLFRGIRGKPLN------PGVFQRYIRQLRRYLGLPLSTT--------AHTLRHSFAT 271
             PL   +     +        V +R+       +      T         H +RH+ A+
Sbjct: 456 ATPLVASLDEDGAHIESTRLWRVLRRFFVLAADAIHDERPATAEKLRRASPHWMRHTHAS 515

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           H L+ G +L  ++  L H  +STT  Y + +         + ++  
Sbjct: 516 HALARGAELVMVRDNLRHASISTTSTYLHSDEVQRARQFDQAFEAH 561


>gi|294644652|ref|ZP_06722402.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294809546|ref|ZP_06768241.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|292639986|gb|EFF58254.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294443246|gb|EFG12018.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 356

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 99/260 (38%), Gaps = 19/260 (7%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           + I+++ +  +    +RA +   +   I   +     S +K+ LK     +  T      
Sbjct: 109 KAISVKLLEDIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEYLTVDISAK 168

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           ++ +        AL   +   LVD         T   D             GLR S+  +
Sbjct: 169 VKGITNIEKPRVALTMNEVQMLVD---------TPCKDDVLKRAFLFSILTGLRHSDIQT 219

Query: 176 LTPQN-IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           L  +      + T +      K +     P +++A+         D  L     +F G+ 
Sbjct: 220 LKWKQIQQTSKGTWQAVVIQQKTKRPDYKPVIQQALQLCGIRPDDDEAL-----VFEGLT 274

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
               +     R ++      G+    T H  RHS+A+ LL NG D+ +I+S++GH  + T
Sbjct: 275 ----DASWISRPLKVWIEASGIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKT 330

Query: 295 TQIYTNVNSKNGGDWMMEIY 314
           TQIYT++ ++        ++
Sbjct: 331 TQIYTHIVNEQKEKAANTLH 350


>gi|284990526|ref|YP_003409080.1| LigA [Geodermatophilus obscurus DSM 43160]
 gi|284063771|gb|ADB74709.1| LigA [Geodermatophilus obscurus DSM 43160]
          Length = 397

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/288 (17%), Positives = 93/288 (32%), Gaps = 41/288 (14%)

Query: 23  QNLEIERGLSKLTLQSYECDTR-QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           + L  + G+   TL  Y    R   L     +         +  +++ ++  +++K   Q
Sbjct: 71  RWLASQTGVKPSTLYRYGNLLRTHVLPTWGKHQ--------LADVTHADVAVWVAKLLGQ 122

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                +++++       L    +      +    +   +   S PR L   +   L D  
Sbjct: 123 GSAAGTVRQAHRVFSLLLGLAVRDGRIPRNPAERVPLPRVIRSEPRFLTHDEVERLADAA 182

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----------- 190
                            ++ LL   GLR  E  +L  + +   +  L I           
Sbjct: 183 GAEGD------------VIRLLAYTGLRFGEMAALRVRRVDFLRRRLTIAEAVTEVGGRL 230

Query: 191 ---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
                K  + R VPL  +    + E           +  L          L     +   
Sbjct: 231 EFGTPKTHQQRTVPLPAT----LAEPLARRCEGKQGDDLLVTTASGTVLRL-RNWRRVVF 285

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
               R  GL    T H LRH+ A+  +S+G  ++++Q +LGH   + T
Sbjct: 286 DPAVRAAGLS-DVTPHDLRHTAASLAVSSGATVKAVQRMLGHASAAMT 332


>gi|222152421|ref|YP_002561596.1| phage integrase [Streptococcus uberis 0140J]
 gi|222113232|emb|CAR40731.1| putative phage integrase [Streptococcus uberis 0140J]
          Length = 381

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/302 (16%), Positives = 110/302 (36%), Gaps = 36/302 (11%)

Query: 33  KLTLQ--SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK- 89
           KLTL+  SY          +  Y  +      + +++ ++++ FI+         +++  
Sbjct: 82  KLTLKPQSYNSTVSMLNKHILPYFGKM----KLDKITSSDVQTFINSL-----SKKTINY 132

Query: 90  -RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS---LPRALNEKQALTLVDNVLLHT 145
             + S I   L++    ++   +   ++   +K        + + +      +D +  + 
Sbjct: 133 VNARSIISRILQHGVLLQLIQHNPARDIVLPRKQKKDSDKVKFIEKDDLKKFLDYIEKYK 192

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK------------ 193
               K     N  +  LL   GLRI EA +L   +I     T+ I               
Sbjct: 193 LRNYK--TNFNYVLYKLLLATGLRIGEACALEWSDIDLINGTINIDKTYSKSIRRLSTTK 250

Query: 194 -GDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
                R++ +  +    +  Y         ++       +F     K  +  V Q  + +
Sbjct: 251 SKSGTRLISIDQATVNMLKLYQVRQRQLFHEVGGKAPKVVFATPTRKYFHTFVRQNALDR 310

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
                G+P   T H  RH+ A+ LL+ G   + +Q  LGH  ++ T  +Y++++     +
Sbjct: 311 ACIEAGIPR-FTFHAFRHTHASLLLNAGISYKELQYRLGHSNIAMTLDVYSHLSKDKEKE 369

Query: 309 WM 310
            +
Sbjct: 370 AV 371


>gi|329965392|ref|ZP_08302316.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328522184|gb|EGF49298.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 410

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 63/325 (19%), Positives = 123/325 (37%), Gaps = 27/325 (8%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL-AFYTEEKITIQ 61
           G + P+++     +  Q + + ++ E   +K T+  YE   R  + F+   Y    I ++
Sbjct: 105 GYDSPKMLIETFNEHNQEYRELMDKE--YAKGTVLRYERTVRYLVEFMREQYNCADIPLK 162

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           +I     T+   FI  +  +     +  + L  +K   K    +K   E    ++   K+
Sbjct: 163 SINYEFITKFEHFI--KTQKGCAQNATVKYLKNLKKITKTAILKKWINEDPFADIH-FKQ 219

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           + +    LNE +   ++   +     +T         I       GL  ++   L  ++I
Sbjct: 220 TKTNRDFLNESELRRIIAKDIDIERLQTV------RDIFIFCSFTGLAFTDVKHLKAEHI 273

Query: 182 ---MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
               D +  +R   +         L  + + ILE Y   P        LP+    R    
Sbjct: 274 VQADDGRWWIRKAREKTDNMCDIPLLDIPRLILEKYKSRPGYSERGFLLPVPSNQRMNG- 332

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                  Y++++     +    + H  RH+FA+  ++N   L SI  +LGH  + TT+IY
Sbjct: 333 -------YLKEIADICHIKKKLSTHIARHTFASLAIANKVSLESIAKMLGHTDIRTTRIY 385

Query: 299 TNVNSKNGGDWMMEIYDQT----HP 319
             + +      M  + D+     HP
Sbjct: 386 AKIMNSTIAFEMQTLQDKFALPTHP 410


>gi|260910286|ref|ZP_05916961.1| phage integrase family site-specific recombinase [Prevotella sp.
           oral taxon 472 str. F0295]
 gi|260635588|gb|EEX53603.1| phage integrase family site-specific recombinase [Prevotella sp.
           oral taxon 472 str. F0295]
          Length = 267

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/297 (14%), Positives = 109/297 (36%), Gaps = 35/297 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++   L  E  +++ T+ +Y      +        +  + +          I  F   
Sbjct: 2   VESFKTALR-ESNMAENTISAYTYAVNDYFAKYKALNKRNLLL-----YKANVIEQF--- 52

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                   +++   +  +  FL+++ K         L+++++K           +  ++ 
Sbjct: 53  ------KPKTVNLRIQALNKFLEHIGK-------PKLHLKSVKVQQRT----YLENVISQ 95

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            D + L    + +  +     ++  L   G R+SE + +  +++        I  KG K+
Sbjct: 96  ADYIFLKKKLKQE-ENLMWYFVVRFLTTTGARVSELIQIKVEHVHI--GYFDIYSKGGKV 152

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R + +   +R+   ++     F         +FR   G+ +      + ++      GL 
Sbjct: 153 RRLFIPKRLREETEKW-----FKETQQTTGYIFRNRFGERITTRGISQQLKNYAERYGLN 207

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            +    H+ RH +A + L    D+  +  ++GH  + TT+IY    +      + ++
Sbjct: 208 ANVVYPHSFRHRYAKNFLEAFNDIALLADLMGHESIETTRIYLRRTASEQQAIVDKV 264


>gi|160887392|ref|ZP_02068395.1| hypothetical protein BACOVA_05411 [Bacteroides ovatus ATCC 8483]
 gi|156107803|gb|EDO09548.1| hypothetical protein BACOVA_05411 [Bacteroides ovatus ATCC 8483]
          Length = 420

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 99/260 (38%), Gaps = 19/260 (7%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           + I+++ +  +    +RA +   +   I   +     S +K+ LK     +  T      
Sbjct: 173 KAISVKLLEDIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEYLTVDISAK 232

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           ++ +        AL   +   LVD         T   D             GLR S+  +
Sbjct: 233 VKGITNIEKPRVALTMNEVQMLVD---------TPCKDDVLKRAFLFSILTGLRHSDIQT 283

Query: 176 LTPQN-IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           L  +      + T +      K +     P +++A+         D  L     +F G+ 
Sbjct: 284 LKWKQIQQTSKGTWQAVVIQQKTKRPDYKPVIQQALQLCGIRPDDDEAL-----VFEGLT 338

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
               +     R ++      G+    T H  RHS+A+ LL NG D+ +I+S++GH  + T
Sbjct: 339 ----DASWISRPLKVWIEASGIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKT 394

Query: 295 TQIYTNVNSKNGGDWMMEIY 314
           TQIYT++ ++        ++
Sbjct: 395 TQIYTHIVNEQKEKAANTLH 414


>gi|307290990|ref|ZP_07570879.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0411]
 gi|306497947|gb|EFM67475.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0411]
          Length = 387

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/333 (17%), Positives = 113/333 (33%), Gaps = 41/333 (12%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKIT 59
           E N + +  S    +    WL+N        K T++  SY      F   +  +  +   
Sbjct: 57  ERNGIKQSSSITFQEIAVMWLENY-------KNTVKDSSYSRTNIIFNKHIFPHFGK--- 106

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
              I +++    +  ++   T     +     L+ +    K+     +T E+   N+   
Sbjct: 107 -IEIAKINTAYCQKVVNNWHTNGTSKQ-YPLFLNYMNKVFKFAISMGVTAENPTTNVIIP 164

Query: 120 K------KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
           K        ++  +  N+ Q    ++  +     E  +I  R+  +  LL   G RI E 
Sbjct: 165 KNKETANPKDTKIKFYNKDQLQKFLE-CIHQQPQENNYITLRDYTLFRLLAFSGCRIGEL 223

Query: 174 LSLTPQNIMDDQSTLRIQGK---------------GDKIRIVPLLPSVRKAILEYYDLCP 218
           L+LT  ++      L+I                      RI+ L     + + ++     
Sbjct: 224 LALTWDDLNLKTGELQINKTVTKSDTYYVSSTPKTKKSNRIIILDRITLECLKKWRSEQK 283

Query: 219 ---FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
              F L       +F     +           +  ++   LP +   H  RH+ A+ L +
Sbjct: 284 KFLFKLGFTQPSRIFTNDSNEFTINQSVTERYKIYQKKANLP-NIGLHGFRHTHASLLYN 342

Query: 276 NGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGG 307
            G D + +Q  LGH  + TT   YT++      
Sbjct: 343 AGADHKEVQERLGHANIKTTLDTYTHLTDDRKE 375


>gi|255012644|ref|ZP_05284770.1| site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 373

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 103/301 (34%), Gaps = 36/301 (11%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L  L  ++  S    ++Y    R     L  Y  + +    ++ +    ++ FI+  R
Sbjct: 90  EFLSELSTDK--SAHGDKAYSLRLRSLANHLRDYMPQCL----LKDIDTGFVKGFIAHLR 143

Query: 80  TQKI--GDRSLKRSLSGIKSFLKYLKKRKITTESNILNM---RNLKKSNSLPRALNEKQA 134
            Q     D ++      +   L    K+ +   +    +       K  SL   L  ++ 
Sbjct: 144 KQPYLKSDFTIHGYYRLLNVTLNKAVKKGLILSNPCSLLDTDEKPHKPTSLRTYLTLEEL 203

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----MDDQSTLRI 190
             L+          T  +             CGLRIS+  +L  +++     D      I
Sbjct: 204 KRLI---------RTDCVCPEVKKAFLFCCFCGLRISDLTALRWEDMQKEGNDKFRLQII 254

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           Q K  +   +PL     K +             N    L        L   +  + ++  
Sbjct: 255 QRKTKEAIYLPLSEEAIKYL---------PARENENDRLGLIFHLPSLT--IICQVLKGW 303

Query: 251 RRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
               G+     T H  RH+FAT  L+ G DL ++  +LGH  + +TQ+Y  +   +    
Sbjct: 304 TLAAGIKNKKVTFHVSRHTFATLSLALGIDLYTVCKLLGHKNIISTQVYAKIIDASKRQA 363

Query: 310 M 310
           +
Sbjct: 364 I 364


>gi|218264265|ref|ZP_03478130.1| hypothetical protein PRABACTJOHN_03820 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222157|gb|EEC94807.1| hypothetical protein PRABACTJOHN_03820 [Parabacteroides johnsonii
           DSM 18315]
          Length = 413

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 60/292 (20%), Positives = 113/292 (38%), Gaps = 30/292 (10%)

Query: 31  LSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSL 88
            S +T+  Y+   R+   F+  FY ++ IT     +LS   I+AF    +T+  +   ++
Sbjct: 131 YSPVTINRYKNVLRKLETFVPRFYEKDDITFH---ELSPDFIKAFDVFLKTEAGLCRNTI 187

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R +  +K        ++   +      + +++  + P  L   +   +++        E
Sbjct: 188 VRYMKCLKKITNMAIAKEWMRKDPFYGYK-MEQDETDPVFLTNNELQAIMNRNFDIPRLE 246

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
                     I       GL  ++  +L P+++  D +      KG          S   
Sbjct: 247 LV------KDIFLFACFTGLAFADVSTLKPEHLEQDNNGDWWIRKGRVKLERRRKSSSIA 300

Query: 209 ---------AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
                    AIL+ Y+  P  L     LP+    +           Y++++  + G+  +
Sbjct: 301 NIPLLPVPLAILKKYESHPICLKQGTCLPVVCNQKA--------NSYLKEIADFCGIKKN 352

Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            T H  RH+FAT + L+N   L+ + ++LGH     TQ Y  V  KN  D M
Sbjct: 353 LTTHAARHTFATTVTLANNVPLQEVSAMLGHASTRMTQHYARVMDKNLKDNM 404


>gi|83814942|ref|YP_445217.1| Phage integrase family protein [Salinibacter ruber DSM 13855]
 gi|83756336|gb|ABC44449.1| Phage integrase family protein [Salinibacter ruber DSM 13855]
          Length = 415

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 59/279 (21%), Positives = 111/279 (39%), Gaps = 22/279 (7%)

Query: 35  TLQSYECDTRQFLIFLAF---YTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSLKR 90
           T + Y    R+FL FL      ++E IT+ +   L+   IR F +     +     ++ +
Sbjct: 131 TFRHYRTGIRKFLGFLEDESGQSQEDITL-SFDALTVQLIREFRNHMYEVRGNAPNTVGK 189

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           +L+ IK+      K           +  +  + S    L+ ++   L +  L     E +
Sbjct: 190 TLTQIKTMWNAAVKEGHADRDPWPKI-TIDSAPSQKEKLDFEEIEALEEVDLPEEGSERR 248

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
            +D      L+ LYG G+R S+  +L   +   +   ++ + K         +    +AI
Sbjct: 249 ALDY----FLFALYGGGMRFSDVATLK--HKHLEGGRIQYKMKKTSEGAGVPIVDKAEAI 302

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPL---------NPGVFQRYIRQLRRYLGLPLSTT 261
           L+ YD  P +    +  P+  G     +               R ++++R+   +  + T
Sbjct: 303 LDRYDNRPQEPESRV-FPILDGYDLDEMEDVQRAIESRNAYVNRQLKKVRKKAEIETNLT 361

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            H  RHS A  L    GD+  ++ ILGH R+  T+ Y  
Sbjct: 362 FHLSRHSAAWKLYREMGDIYKVKRILGHSRVEVTEEYLR 400


>gi|307822019|ref|ZP_07652251.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307736585|gb|EFO07430.1| integrase family protein [Methylobacter tundripaludum SV96]
          Length = 382

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 67/353 (18%), Positives = 116/353 (32%), Gaps = 74/353 (20%)

Query: 13  ELLKERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
            L+    ++L  + + RG   S  T Q+Y     +F  FL               ++ T 
Sbjct: 29  ALVNAPNDYLFYVSVVRGRTASAKTWQTYGNHLYEFFGFLESNDLR------WDNVNQTH 82

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNL------- 119
             A+     T+     ++ + LS + +F ++  +  +T           +          
Sbjct: 83  FAAWRDSMLTRGCVRSTVNQRLSAVSNFYRWALRDGLTHNLPFQTQEVWIAKPAGFLAHV 142

Query: 120 --------------KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
                         + +  LPR L  +QA   V                RN  + YL++ 
Sbjct: 143 DAKGNRFQANELTLRTAKGLPRFLLTEQAKQFV----------ATLSPWRNRLMAYLMWL 192

Query: 166 CGLRISEALSLTPQ-----NIMDDQSTLRIQ-------GKGDKIRIVPLLPSVRKAILEY 213
           CGLR  E  +L  +     +       LR+         KG K R V +   +   + +Y
Sbjct: 193 CGLRREEVTALNMRVLPNPSGHAPGKGLRMMLDAKITPTKGSKTRWVLVPYDLVVQLWDY 252

Query: 214 YDLCPFDL--------NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
                  L          +    LF    G P++        R+     G+    T H L
Sbjct: 253 MVFERPRLTKLYQNKHGKDETDLLFLTEYGNPISLEGMNNTFRKASEKSGV--KCTPHML 310

Query: 266 RHSFAT--------HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           RH+F T        H  S+G  L  ++  +GH   S T++Y +       D +
Sbjct: 311 RHTFGTYEFLRMSEHKSSDGA-LHWVRDRMGHSSSSITEVYIHAADLVSHDEI 362


>gi|284031312|ref|YP_003381243.1| integrase family protein [Kribbella flavida DSM 17836]
 gi|283810605|gb|ADB32444.1| integrase family protein [Kribbella flavida DSM 17836]
          Length = 463

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/278 (20%), Positives = 104/278 (37%), Gaps = 27/278 (9%)

Query: 47  LIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK 106
           L  LA++          R  +  E++A++          R+ +R LS + +F  +L +  
Sbjct: 103 LHDLAWFRWCASRGMDPRAATGREVKAWLHLLDAAGAEKRTRQRMLSTLSAFYGHLTELG 162

Query: 107 ITTESNI------LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
           +   +        L +    +  S    L   Q   L++       + T++ D   +  +
Sbjct: 163 VVPANPAALNRARLGLNRSSRDASPTIRLTAPQLHALLEA-AAKLPNRTRFKDLYAARAV 221

Query: 161 YL--LYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
            +  L   GLR+SE + L  Q+++    +  LR+ GKG   R V L     +A+  Y   
Sbjct: 222 AVVALLTLGLRVSELVGLDRQHLVVSGGEQMLRVLGKGGVHREVYLTTLAAEALQRYLGE 281

Query: 217 CPF-----------DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG-----LPLST 260
                           N     PL     G   +       +R++    G     +    
Sbjct: 282 RDLLQETTTPALRGRTNAQATSPLIATRDGGRCSRFDVNALLRRVAVQAGPALADVADKV 341

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             H LRH++ T  L     ++ +Q+ +GH  ++TTQ Y
Sbjct: 342 HPHALRHAYVTIALEQDARIQHVQADVGHASIATTQYY 379


>gi|297581963|ref|ZP_06943883.1| site-specific recombinase XerD [Vibrio cholerae RC385]
 gi|297533830|gb|EFH72671.1| site-specific recombinase XerD [Vibrio cholerae RC385]
          Length = 389

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 99/282 (35%), Gaps = 22/282 (7%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR----TQKIGDRSLKRSL 92
            +Y       +    ++   ++T + + +      R ++           +   +     
Sbjct: 112 SNYSIWISAGIHLHRYHHHAELTFEQVDKYFLEGFRHYLQHEAITKSDTGLSRNTACSYF 171

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           + I++ L   ++ +I  ++ +  ++++K   +    L   +   L           TK  
Sbjct: 172 NKIRAALNQAQRDRIIKDNPVEQVKSIKAERTQRTYLTLDEVKAL-----------TKAE 220

Query: 153 DARNSAILYLLYGC--GLRISEALSLTP-QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              +      L+ C  GLR S+   L   +  +  Q   RI     K++           
Sbjct: 221 CRYDVLRRAFLFSCTTGLRWSDIHKLVWSEIELFAQGHYRIIFSQIKLKNSGNGLQYLDL 280

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
                 L   +        +F+G+R    +       + Q     G+    T H  RH+F
Sbjct: 281 PDSAVRLLNLENRGKPTERVFKGLRYDSYS----NVALVQWAIRAGITKHVTFHAGRHTF 336

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           A + L+ G D+ S+  +LGH  L TT+IY ++      + M 
Sbjct: 337 AVNQLARGLDIYSLSRLLGHSELRTTEIYADILETRRTEAMR 378


>gi|288799833|ref|ZP_06405292.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon
           299 str. F0039]
 gi|288333081|gb|EFC71560.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon
           299 str. F0039]
          Length = 362

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 71/306 (23%), Positives = 114/306 (37%), Gaps = 47/306 (15%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           ++   L K  + +L++ +IE  LSK+T +       +F  FL                  
Sbjct: 99  VIDKYLSKILRVYLKDKDIE--LSKITPK----WVERFFDFLEH---------------- 136

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            E ++FI K   +    R L   LSG    L    K  I  ++    +R +K   S    
Sbjct: 137 -EFKSFIKKTPLKASSARLLGNRLSGA---LAEAVKMDIIKDNPCQKVRAIKAQESQRTY 192

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L +++   L           TK        +   L   GLR S+   L    + +D   +
Sbjct: 193 LTQEELKRLASTPYERGERVTKA------FLFSCL--TGLRFSDVSKLRWAEVSEDFKRI 244

Query: 189 R-IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
             +Q K   +  + L     K + E           N    +F      P   G   + +
Sbjct: 245 TFVQKKTSGLEYLDLSEGATKILKE---------RKNNGGLVF---YDLPRESGNAGKLL 292

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
              R   G+    + HT RH+FAT LL+   DL ++  +LGH  + TTQIY  +  K   
Sbjct: 293 NSWRVRAGINKKISFHTARHTFATMLLTLDVDLYTVSKLLGHKDIKTTQIYAKIIDKKKQ 352

Query: 308 DWMMEI 313
           D + +I
Sbjct: 353 DAVNKI 358


>gi|159904504|ref|YP_001548166.1| integrase family protein [Methanococcus maripaludis C6]
 gi|159885997|gb|ABX00934.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 324

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 66/312 (21%), Positives = 130/312 (41%), Gaps = 26/312 (8%)

Query: 16  KERQNWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +E+  +++    ER    + K T+     D  +  +FLAF  E ++    +    + +  
Sbjct: 21  EEQNKYVKKFREEREFDNIKKTTI---LNDIVRLRVFLAFCEELEMEPFELSTHDFVKFF 77

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI----TTESNILNMRNLKKSNSLPRA 128
            +++ RR       +  +  + +K F + L+           +N    R  K        
Sbjct: 78  NYLTNRR--NCSITTQNKYFNLLKVFYRLLRYENFREFEIESNN--RKRFTKYEKKHYDT 133

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           ++ +    ++  V+L  S        R++ ++ +L+  G R SEAL++  ++   ++   
Sbjct: 134 IDFETYTKILKEVVLSNSRTK----VRDALLIRVLWETGCRRSEALNIRYKDCDLEKGRF 189

Query: 189 RIQ-GKGDKIRIVPLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRGKP-LNPGVF 243
           RI+  K  + R V +     K +++Y         D  +      F G R KP     VF
Sbjct: 190 RIRDTKTYEERTVVVSEDTLKIVIDYIKQNLRRDADDFIFQNEVTFNGKRVKPDWVTAVF 249

Query: 244 QRYIRQLRRYLGLPL--STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           ++ + +L+    +P       H+LRH  AT LL  G  +  ++ ILGH  L TT  Y++ 
Sbjct: 250 KKAVNKLKEDGAIPKGRRVVVHSLRHGRATDLLDKGVPIDIVKEILGHKSLETTLYYSH- 308

Query: 302 NSKNGGDWMMEI 313
           + +     + EI
Sbjct: 309 SKERKEKLLDEI 320


>gi|148989772|ref|ZP_01821081.1| hypothetical protein CGSSp6BS73_01057 [Streptococcus pneumoniae
           SP6-BS73]
 gi|147924888|gb|EDK75971.1| hypothetical protein CGSSp6BS73_01057 [Streptococcus pneumoniae
           SP6-BS73]
          Length = 277

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 100/269 (37%), Gaps = 36/269 (13%)

Query: 60  IQTIRQLSYTEIRAFISKRR-------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
           +  + +L+Y +I  F    R        + +   ++ + +  +K       ++   + + 
Sbjct: 2   VDNVGKLTYEDIYQFREHLRQKVAKNSDKPLSTNTINKIMILLKKIFDVGLRKGYYSSNP 61

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
              ++ L    +  +    K+    +           +  +     +  +L+  GLR+ E
Sbjct: 62  AKLIKKLPIEKTKMQFWTVKEFQKFLTLF--------EPEEYNIKLLFTVLFFTGLRLGE 113

Query: 173 ALSLTPQNIMDDQSTLRIQG---------------KGDKIRIVPLLPSVRKAILEYYDLC 217
           AL+LT Q+I    +T+ I                      R + +   + + + ++    
Sbjct: 114 ALALTWQDIDFSSNTIHITKSVYVNKGVTHISTTKTKAGTRRIVINKKLSQELQDWEKRQ 173

Query: 218 PFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
              L    N ++ L +F+      +     ++  +++     +      H  RHS A+ L
Sbjct: 174 KHLLEQFTNNSLTLQVFQNSPIT-ITKNAIEKQYKKIIERDSILKKIRIHDFRHSHASLL 232

Query: 274 LSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           ++ G D   ++  LGH  ++TT   Y+++
Sbjct: 233 INQGEDYLVVKERLGHASITTTIDTYSHL 261


>gi|150403424|ref|YP_001330718.1| phage integrase family protein [Methanococcus maripaludis C7]
 gi|150034454|gb|ABR66567.1| phage integrase family protein [Methanococcus maripaludis C7]
          Length = 322

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 60/309 (19%), Positives = 124/309 (40%), Gaps = 28/309 (9%)

Query: 19  QNWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           + W+     ER   G+ K T+Q      + FL F+    E     +   +++  E   F 
Sbjct: 24  KKWVDKFIAEREFDGIKKTTIQGDVNRLKVFLNFIFNRLE-----KNPEEMTNAEFIKFF 78

Query: 76  SKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +   + +K+   +  +  + +K F K ++        N  + ++  +      +   K  
Sbjct: 79  NYLEKERKLSRNTQNKYYNNLKVFYKLMRLE------NFKDFKDESEERKRFTSFEIKHY 132

Query: 135 LTL----VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            +L    ++ +L            R++ I+  L+  G RISEAL L   +   ++   R+
Sbjct: 133 DSLSTEILNMILTEILETRSTTKIRDAMIIRFLWDTGARISEALKLEYGDSDLEKGEFRL 192

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQRY 246
           +    K   +    +    ++ Y       L    +  +F+  +G+PL       VF+  
Sbjct: 193 RNTKGKEERIVTCSNDTLTLVNYCLKAN--LRKEPKDKIFQTYKGEPLQRNRVSDVFRNA 250

Query: 247 IRQLRRYLGLP--LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +++L+    +P       H+LRH  A  LL  G  +  ++  LGH  L TT  Y++ + +
Sbjct: 251 VKELKSQGRIPENKRVVIHSLRHGRAVDLLDKGMPIDIVKEYLGHKSLETTLYYSH-SKE 309

Query: 305 NGGDWMMEI 313
              + + +I
Sbjct: 310 RQENMLKQI 318


>gi|268611842|ref|ZP_06145569.1| integrase family protein [Ruminococcus flavefaciens FD-1]
          Length = 404

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 99/289 (34%), Gaps = 34/289 (11%)

Query: 51  AFYTEEKITIQTIRQLSYTEIR-AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           A    E +   +I  L+   I+   I+K         ++ ++   +   L Y   +   T
Sbjct: 117 ANQVNEHLGYLSISNLTPEIIQTDLINKMIELDYAYGTIHKAYVILNECLNYAVFKDYIT 176

Query: 110 ESNILNMRNLKK---SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
           ++  + ++   K        R LN+ +  T      +  S+         + I+ L+   
Sbjct: 177 KNPCMGVKLPSKDNFEKKERRFLNDDEIQTFKAQACVSQSNFNIPKYVYGN-IICLILYT 235

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQG-----------------------KGDKIRIVPLL 203
           GLR+ E  +L  ++I      L +                         K  K R++PL 
Sbjct: 236 GLRVGELSALKWKDIDFQHKILSVNKAVVVVYDYSAKPKKRTLTVQDTTKSGKPRVIPLN 295

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
               + +          L              +  +  V      ++ R   +P  +  H
Sbjct: 296 QKAIQILET-----QRSLFGGDDDCFIVNGTKQIPDKTVVANSYSKIARAAKIPDPSGIH 350

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMM 311
           TLRH+FA+  +  G D++ +  ILGH  ++ T   Y ++  +     + 
Sbjct: 351 TLRHTFASSAIRKGVDIKVVSEILGHASVTFTYNTYVHIIDEQKARAVE 399


>gi|302346838|ref|YP_003815136.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302151069|gb|ADK97330.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 410

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 65/286 (22%), Positives = 109/286 (38%), Gaps = 24/286 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSLKR 90
           SK +LQ Y    R F  FL      K     + + + + ++ F     T       +  +
Sbjct: 129 SKDSLQKYSVLRRHFSEFLIHKYGRK--DVGLTEFTPSVVQDFELYLSTVAGCAYNTSVK 186

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +  +K+   Y +KR        LN R   +  +    L +++ + + +  L     E  
Sbjct: 187 KMKALKTVTIYAQKRGYLLHDPFLNHRFHLEPVNR-GFLTDEEIMKIANKDLAIQRLEL- 244

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVR 207
               R+  I       GL   +  +LTP NI    D Q  +  + K +    V LL   +
Sbjct: 245 ---VRDVFIFSCF--TGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTNVETNVLLLDIPK 299

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             I +Y      D           G     L       Y++++    G+  + T H  RH
Sbjct: 300 SIIAKYSHKTYRD-----------GKLFPILTNQKTNAYLKEIADLCGVKKNLTFHLARH 348

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +FAT  LS G  + S+  +LGH  + TTQIY  + +K     M ++
Sbjct: 349 TFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQL 394


>gi|268608336|ref|ZP_06142063.1| hypothetical protein RflaF_02413 [Ruminococcus flavefaciens FD-1]
          Length = 396

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/330 (14%), Positives = 115/330 (34%), Gaps = 52/330 (15%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQS--YECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + +  +  + W +        +K  L+S  YE   +     L       +    + +++ 
Sbjct: 66  AMKFQELAEEWFE------NYAKNALRSTTYERMLQ-----LRGRIYPALGHMRMDKITP 114

Query: 69  TEIRAFISKRRTQK--------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            +I+AF++    +         +  ++++ +LS +     Y  K  +  ++    +   K
Sbjct: 115 RQIQAFVNSLSREGANERTGKPLAPKTIRHNLSFVSDVFSYAVKMGVVNDNPCTKVTLPK 174

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
            + +  +    +Q    +   LL+          +      L+   G R  E L L  ++
Sbjct: 175 NNQAEKKIYTPEQVQRFL--SLLNNEP------LKYRTFFNLMIFSGFRRGEMLGLEWKD 226

Query: 181 IMDDQSTLRIQGKGDKI----------------RIVPLLPSVRKAILEY-----YDLCPF 219
           +  + + + ++   +                  R +     +   + EY           
Sbjct: 227 VDFENNIISVRRTSNYTGRKGTYTDTTKTKKSQRTLKFPQEIMDMLREYKDEQDMQALKC 286

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
                    L+   +G P+  G    ++ +      LP     H+ RH FA+ L++ G D
Sbjct: 287 GDKWVEADRLYTKWKGLPMQNGTPYFWLGEFCEKHDLPFY-GLHSFRHLFASLLVNQGVD 345

Query: 280 LRSIQSILGHFRLSTTQ-IYTNVNSKNGGD 308
           + ++   LGH  +STT  IY ++  +    
Sbjct: 346 IVTVSGALGHSTVSTTSNIYCHMLEEAQAK 375


>gi|257866765|ref|ZP_05646418.1| phage integrase [Enterococcus casseliflavus EC30]
 gi|257872718|ref|ZP_05652371.1| phage integrase [Enterococcus casseliflavus EC10]
 gi|257800723|gb|EEV29751.1| phage integrase [Enterococcus casseliflavus EC30]
 gi|257806882|gb|EEV35704.1| phage integrase [Enterococcus casseliflavus EC10]
          Length = 380

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/308 (13%), Positives = 98/308 (31%), Gaps = 50/308 (16%)

Query: 36  LQSYECDTR-----QFLIFLAFYTEEKITIQTIRQLSYT----EIRAFISKRRTQKIGDR 86
           + +Y    +         F   +         + ++S +    ++  +    +      +
Sbjct: 77  IDNYRTRVKPSSVAVAQRFCKNHILPAFGELRLDKISVSYCQKQVNEWHKTLKQYGFLRK 136

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK---SNSLPRALNEKQALTLVDNVLL 143
           +            K+    ++  ++ +      +K      L +   + Q    + N   
Sbjct: 137 TTA-------QIFKFGVAMEVCKDNPMSKTLLPRKIEDEQPL-KFYTKDQLQLFLQNTKE 188

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM----------------DDQST 187
           + S +             LL   G+R SEAL+L  ++I                  +   
Sbjct: 189 NNSVKL-------YTFFRLLAYTGMRKSEALALQWEDIDYFNKTVTIGKTIAQDEFNHVV 241

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL------NLNIQLPLFRGIRGKPLNPG 241
           L++    +  R + L     K +  +       +        + +  LF     K   P 
Sbjct: 242 LQVPKTKNSSRTIQLDDFTLKQLRIWQQEQMKIMILYGYNTNSPKQFLFTTNTNKLYYPQ 301

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTN 300
           V   ++  + +   +    T H  RH+  + L  +G  ++ +Q  LGH  + TT  IY +
Sbjct: 302 VVNDWLDWIYKKTPMEPQITPHGFRHTHCSLLFESGASIKEVQERLGHKDIKTTMNIYAH 361

Query: 301 VNSKNGGD 308
           V  ++   
Sbjct: 362 VTPQSVKK 369


>gi|318604128|emb|CBY25626.1| putative bacteriophage integrase [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 351

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 99/233 (42%), Gaps = 27/233 (11%)

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R +K+  R++   L+  ++    L +  +   E  + N+R  +   S    L  ++  TL
Sbjct: 123 RVKKVSPRTVNLELAYFRAMFNELIRLDEWKAEHPLKNVRPYRTDESEMAFLRLEEIDTL 182

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +      ++ +          ++ +    G R SEA SL+   I  D+ T  I+ KG K 
Sbjct: 183 LKECANSSASDL-------LTVVKICLATGARWSEAESLSLSQITKDRITF-IKTKGKKN 234

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R +P+   + K+I                 PLF            F+  ++  R  + LP
Sbjct: 235 RTIPVSEELIKSI----------PKKESGEPLFVSCY------SAFRTALK--RAKINLP 276

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               +H LRH+FA+H +  GG++  +Q ILGH  +  T  Y++ +  +  + +
Sbjct: 277 AGQLSHVLRHTFASHFMMAGGNILVLQRILGHTDIKMTMRYSHFSPNHLNEAI 329


>gi|163785712|ref|ZP_02180232.1| Tn554-related, transposase A [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879019|gb|EDP73003.1| Tn554-related, transposase A [Hydrogenivirga sp. 128-5-R1-1]
          Length = 340

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 116/337 (34%), Gaps = 76/337 (22%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR---------- 79
           G+S+ +L++Y    + F  FL               ++   +  F+   +          
Sbjct: 16  GISRNSLRAYAYHLKLFFEFLESKG------LNYENVTIDNMADFLIWLQSPYKTDNVIP 69

Query: 80  ------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR---------------- 117
                   K   R++   +S +  F  YL + +  + +    ++                
Sbjct: 70  FKQKPIESKRSPRTINIIISTVLDFYDYLMRNENYSGNLSERLKKEMSGSRRGYKGFLYH 129

Query: 118 ------------NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
                        +K+  + P+ L ++Q  TL++             + R+  ++ LL+ 
Sbjct: 130 IQKEKSFLAKILKIKEPKTRPKVLTKEQVKTLINAC----------NNLRDKFLISLLWE 179

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKI-----------RIVPLLPSVRKAILEYY 214
            G+RI EALSL  ++   D+  L I+ +G+             R + +   +    ++Y 
Sbjct: 180 TGIRIGEALSLWIEDFSIDKRILTIKDRGELENKAEIKTVNSPRTIHISEKLTNMFIQYV 239

Query: 215 DLCPFDLNLNIQLPLFRG--IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                +      + +      + +P+         ++L +  G+    T H LRH+  T 
Sbjct: 240 ADYHTNEVDTNFVFIKLSGKNKYQPMEYQDVDSLFKRLYKKTGI--KATPHMLRHTSLTE 297

Query: 273 LLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGD 308
           L   G     +Q   GH  +  T Q Y +   ++   
Sbjct: 298 LRKAGLKPEHLQKRAGHKDVQFTIQTYYHPTDEDIRK 334


>gi|255034767|ref|YP_003085388.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254947523|gb|ACT92223.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 430

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 64/306 (20%), Positives = 129/306 (42%), Gaps = 27/306 (8%)

Query: 10  VSFELLKERQNWLQ--NLEIERG-LSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQ 65
            S  LL     ++     + ++G  S+ TL+ +    R+   F+ F Y  + I +  I Q
Sbjct: 119 PSQSLLAAFDEFIAIFEKKAKKGIRSEGTLRHWRSTKRKVEAFIRFRYQRKDIEMTEIDQ 178

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNS 124
               E   +++    + + + + K+ +   +  +K   K+K+   + +   + +      
Sbjct: 179 CFAEEFYDYLTLHLDEPLSEVTAKKLVKWTRQIVKTGVKKKVIPSNPLEGFVCSGGNKEV 238

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-- 182
           LP  L E +A+              +  + R++ I       G    +  +L+P+NI+  
Sbjct: 239 LPLELFEVEAIH------KKQIDIDRISEVRDAFIFQCF--TGFAYQDMYNLSPENIVKV 290

Query: 183 ---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
               ++  ++ +GK +   +VP+LP V+  I +Y       +N N  +P+    R     
Sbjct: 291 GRAGEKWLIKDRGKTEVTEMVPILPIVQDLIDKYQSHPYCRVN-NRLIPVNSNFR----- 344

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
              +  Y+++L    G+      H  RH+FA  +L+NG  L  +  +LGH  + TTQ Y 
Sbjct: 345 ---YNVYLKELAVICGIKRPLNTHLARHTFADMMLNNGVPLEDVGKMLGHRNIRTTQRYA 401

Query: 300 NVNSKN 305
            V  + 
Sbjct: 402 RVRKQR 407


>gi|282878079|ref|ZP_06286884.1| phage integrase domain protein [Prevotella buccalis ATCC 35310]
 gi|281299819|gb|EFA92183.1| phage integrase domain protein [Prevotella buccalis ATCC 35310]
          Length = 268

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/300 (15%), Positives = 111/300 (37%), Gaps = 39/300 (13%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E + + + L  +  ++K T+ +Y    ++F        +  + +           + ++ 
Sbjct: 2   ELEKFEEFLS-QGNMAKNTISAYLYAVKEFSSRHKELNKRNLLV----------YKTYLI 50

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNEKQA 134
               +    +++   +  I  +L ++ K K+        ++++K      L   ++    
Sbjct: 51  ----ETYKPKTVNLRIQAINKYLVFVGKAKL-------RLKSVKVQQRSYLENVISNADY 99

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           + L     L      +W       ++  L   G R+SE + +  +++        I  KG
Sbjct: 100 IFL--KNKLKGEDNLEW-----YFVVRFLAATGARVSELVQIKIEHV--QAGYYDIYTKG 150

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            KIR + +  ++R    ++               LF    G+ +      + ++      
Sbjct: 151 GKIRRIYIPKTLRVETEKWLQTIN-----RTSGYLFLNRFGERITTRGISQQLKNHAVKY 205

Query: 255 GLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GL       H+ RH +A + L    D+  +  ++GH  + TT+IY   +S    + + ++
Sbjct: 206 GLNEKVVYPHSFRHRYAKNFLEKFNDIALLADLMGHESIETTRIYLRRSSLEQQEIVDKV 265


>gi|255690817|ref|ZP_05414492.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
 gi|260623621|gb|EEX46492.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
          Length = 385

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 63/327 (19%), Positives = 122/327 (37%), Gaps = 39/327 (11%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           E N LP+ +  + L    ++++ +      S+ T  +Y         +L +    +  + 
Sbjct: 77  EPNQLPKRIFADWL---NDYIEGIRRSPSYSQSTYHNYRSTVNIIKAYLQYRRRPRYLMS 133

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDR--------SLKRSLSGIKSFLKYLKKRKITTESNI 113
            I +     +  F+                   +L    + +   L       I   +  
Sbjct: 134 KIDKKFIAGLLDFMQNTYRNTKSPDNPKEMSQCTLHLHQAILVRMLNAAVNEGIMNSNPF 193

Query: 114 LNM---RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
             +     + K  +    L + + L L +     T++ET        A L+  +  GLR 
Sbjct: 194 YALGKHERIAKQQAERDYLTKDELLALAEAP---TTNETTR-----RAFLFCCF-TGLRY 244

Query: 171 SEALSLTPQNIMDDQS----TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           S+  +L  ++I    S    ++R   K  K   +PL  S  K +           + N  
Sbjct: 245 SDVCTLAWRDIKQVDSGLVVSIRAMRKTGKQVTIPLNQSALKWL----------PDRNGC 294

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
            P  R      L+     R +++     G+  + + HT RH+FAT  L+ GGDL ++  +
Sbjct: 295 KPGQRVFDMTSLSAC--DRCLKKSAVAAGIEKNVSYHTSRHTFATLSLAAGGDLYTVGKL 352

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           LGH  + +TQ+Y +V  +   + +  I
Sbjct: 353 LGHTNILSTQVYADVVMETKIEAVNRI 379


>gi|194398032|ref|YP_002037770.1| site-specific tyrosine recombinase XerS [Streptococcus pneumoniae
           G54]
 gi|254799371|sp|B5E4Q4|XERS_STRP4 RecName: Full=Tyrosine recombinase xerS
 gi|194357699|gb|ACF56147.1| tyrosine recombinase XerC [Streptococcus pneumoniae G54]
          Length = 356

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 116/326 (35%), Gaps = 51/326 (15%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEE------KITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  +  +F  ++             I +  +  +S  ++ +FI   R     
Sbjct: 33  YSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDMESFILYXRERPLL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKR--------------------KITTESNIL 114
                 Q +   ++ R+LS + S  KYL +                     K   E+   
Sbjct: 93  NANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAA 152

Query: 115 NMRNLKKSNSLPR----ALN--EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
              N+K+   L       L   +++    + N  L + ++ K    R+ AI+ LL   G+
Sbjct: 153 RAENIKQKLFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNK---ERDLAIIALLLASGV 209

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQL 227
           R+SEA++L  +++      + +  KG K   V +    +  +  Y  +            
Sbjct: 210 RLSEAVNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKTDT 269

Query: 228 PLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
            LF  +       ++    ++ + +        +  T H LRH+ AT L         + 
Sbjct: 270 ALFLTLYRGVPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVS 327

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWM 310
             LGH     T +YT++ +    + +
Sbjct: 328 HQLGHASTQVTDLYTHIVNDEQKNAL 353


>gi|161522694|ref|YP_001585623.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189348450|ref|YP_001941646.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
 gi|160346247|gb|ABX19331.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189338588|dbj|BAG47656.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
          Length = 490

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/325 (17%), Positives = 108/325 (33%), Gaps = 39/325 (12%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR---- 79
            L      S  T ++Y  +  +   +   +      +     L+  ++ A+         
Sbjct: 168 FLRDRGSRSTHTTRAYVTEICRLAAWCIAHE-----LGPFSDLTRHDLLAYRRALHHPAR 222

Query: 80  ------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSL--PRALN 130
                  + +   S  R+L+ + S  +Y  +    T +     +R  ++   L   R L 
Sbjct: 223 DVNEDDARSLTAASQARALAVVASLFRYWTETGYLTANPAAGLVRGQRRHVGLASSRILT 282

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP------QNIMDD 184
             Q       V    +     + AR  AI  L    G+R+ E +          +   D 
Sbjct: 283 AAQLAACDAKVNEVMADIDPVVAARRRAIWMLYRYAGVRLVELVWSDDQKLPVAEVESDG 342

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGV 242
           + TL + GKG K R +PL       +  Y  L     +     ++ L  G++G  L    
Sbjct: 343 RWTLHVYGKGQKTRAIPLPQGCVSVLQAYRQLRGLPAHPESGERVALIHGLKGGSLQSSG 402

Query: 243 FQRYIRQLRRYLGLP------------LSTTAHTLRHSFATHL-LSNGGDLRSIQSILGH 289
               ++ +                      + H LRH++A  L +     L + Q++LGH
Sbjct: 403 LYDEVKAIFVAAAATLEYTDPGGAATLRRASPHWLRHAYARTLVVDRQVPLPAAQALLGH 462

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIY 314
             + TT  Y   +      ++   +
Sbjct: 463 ASIQTTAAYAKTDLSQLRAFVDRAF 487


>gi|218690783|ref|YP_002398995.1| Integrase [Escherichia coli ED1a]
 gi|218428347|emb|CAR09275.2| Integrase [Escherichia coli ED1a]
          Length = 338

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 65/331 (19%), Positives = 120/331 (36%), Gaps = 59/331 (17%)

Query: 8   EIVSFE--LLKER--QNWLQNLEIERGLSKLTLQSY------ECDTRQFLIFLAFYTEEK 57
           E ++FE   ++E   + WL   E  R LS+L  Q Y        D ++ +  L       
Sbjct: 34  EAIAFESFTMEEVNKKPWLGEKEDRRHLSELIEQWYSLYGQTLADPKRLIAKLRIIC-NG 92

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKI-----------GDRSLK---RSLSGIKSFLKYLK 103
           +      +L+  +   +   R   ++             R++    R+LS +  F    K
Sbjct: 93  LGDPIASELTAGDFTKYREARLKGEVRNEDGTFMSPVKPRTVNLEQRNLSSV--FGTLKK 150

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
               +  + +  +   K + S    L  ++   L+D      S            I  + 
Sbjct: 151 LGHWSAPNPLAGLPTFKIAESELAFLTPEEIKRLLDACADSQSSSL-------LLIAKIC 203

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
              G R SEA +L   + +        + KG K R VP+   + + +             
Sbjct: 204 LATGARWSEAENLQ-SHQVSKYRITYTKTKGKKNRTVPISKDLYEEL------------- 249

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLR 281
               P  RG    P      ++   +  +  G+  P     H LRH+FA+H + NGG++ 
Sbjct: 250 ----PKNRGKLFTPC-----RKAFERAVKRAGIDLPEGQCTHVLRHTFASHFMMNGGNIL 300

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            ++ ILGH  +  T +Y +    +  D + +
Sbjct: 301 VLRDILGHSDIKMTMVYAHFAPDHLEDAVTK 331


>gi|317481276|ref|ZP_07940347.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902609|gb|EFV24492.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 411

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/290 (18%), Positives = 105/290 (36%), Gaps = 25/290 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K TL  Y+   +    FL   Y  + I ++ +     ++   F+  R  +     ++  
Sbjct: 130 AKATLSKYKTVYKHLQEFLNIRYHVKDIALKELTPAFISDFEMFL--RTDKHCCTNTVWL 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +  +++ +      +  T         +KK  +    L + +   L++  L +   E  
Sbjct: 188 YVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKDEIRLLMEGKLKNAKQE-- 244

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRIQGKGDKIRIVPLLPSVR 207
                   +       GL  ++  +LT +N     DD   + I  +   +     L  + 
Sbjct: 245 ----LYRDLYLFCAFTGLSFADMRNLTEENIRTYFDDHEWININRQKTGVVSNIRLLDIA 300

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           K I++ Y     D        +F                IR + +  G+    T H  RH
Sbjct: 301 KRIVDKYRGLCEDGR------IFPVPHYM-----TCLYGIRAVAKRCGITKHITWHQSRH 349

Query: 268 SFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           + AT   LSNG  + ++ S+LGH  + TTQIY  +  +     M  +  +
Sbjct: 350 TAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMESLAAK 399


>gi|298250312|ref|ZP_06974116.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297548316|gb|EFH82183.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 325

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/306 (19%), Positives = 111/306 (36%), Gaps = 41/306 (13%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T+++Y    R+++ +LA            ++++ T I  F++          + K++ 
Sbjct: 34  PSTIEAYTRVLRKYVTWLAQRPGNYQQF-HPQEITRTSIEFFLATLS----SSSAKKQAK 88

Query: 93  SGIKSFLKYLKKRK-ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           + +  F  +L++ K +   +    +    ++   PR L+E Q   L + +        K 
Sbjct: 89  AALSGFCTWLQEEKQLLDRNPTHGVSVPAQALLAPRELSEDQRYVLANLIEREADLRGK- 147

Query: 152 IDARNSAILYLLYGCGLRISEALSL--TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
                 A+  L Y  G R+S+   L     ++      + +  KG K R + L    R+ 
Sbjct: 148 ------AVFALGYWAGCRVSDVSWLLRDQVHVNGKAGWMTVGHKGGKTRTIDLTNGARRP 201

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPG-------------VFQRYIRQLRRYLG 255
           + EY +             +F   R  K L+ G              + + ++ L R   
Sbjct: 202 LHEYLEQGTR----KESAYVFTSQRAKKRLSAGEVDGWRWSEDGIHQWWQQVKTLARAAE 257

Query: 256 --LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR------LSTTQIYTNVNSKNGG 307
             L    T H LRH FA    + G  L  +   LGH        + TT  Y  V+     
Sbjct: 258 HELIADITFHDLRHDFAHRARAAGWSLEEVAYYLGHITKAGTPAIQTTIRYVQVSRDQVK 317

Query: 308 DWMMEI 313
             + +I
Sbjct: 318 KKLKDI 323


>gi|229191399|ref|ZP_04318384.1| Integrase-recombinase [Bacillus cereus ATCC 10876]
 gi|228592081|gb|EEK49915.1| Integrase-recombinase [Bacillus cereus ATCC 10876]
          Length = 390

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 65/313 (20%), Positives = 119/313 (38%), Gaps = 34/313 (10%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE--------KITIQTIRQLSYTEIRAF 74
           ++++ ++   + T +SY  +   F   +  + EE        +     ++ L    IR +
Sbjct: 75  KDMDEKKNRKEDTKKSYVSEILSFCQCMVQHAEEFELNGEEVQKNDSLLKTLQPWNIRKY 134

Query: 75  ISKRRT-------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--NLKKSNSL 125
            S  +              +L +    I+SFLK+L       +     ++  N+ + +  
Sbjct: 135 NSWLKRVENGRNGDTYAVATLAKKTVLIRSFLKHLHVFSYIEKPLHEELQRANVNEQDRP 194

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDD 184
            R L+  + + ++           +     N  IL  L   G RI E  +   ++   D 
Sbjct: 195 NRDLSYDEVMKILGFY-------KERGHLVNYTILLALASTGARIQELCTARVKDLHYDG 247

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGV 242
           +  L++ GKGDK+R + +   + + I E          L    + PLF   RG   N   
Sbjct: 248 KYWLKVTGKGDKVRELFISEHLYQCICEMRRRRGCQTVLEKGDESPLFINQRGNTYNSKT 307

Query: 243 FQRYIRQLRRYLGLPL------STTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTT 295
               +  + +   L          TAHT RH+FA   +  G  DL  +   LGH  + TT
Sbjct: 308 LSNQVTDMIKKTNLEFLLYRENPVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTT 367

Query: 296 QIYTNVNSKNGGD 308
           +IY   + K   +
Sbjct: 368 KIYLEKHMKRKNN 380


>gi|83815580|ref|YP_445628.1| phage integrase domain/SAM domain-containing protein [Salinibacter
           ruber DSM 13855]
 gi|83756974|gb|ABC45087.1| Phage integrase, N-terminal SAM-like domain protein [Salinibacter
           ruber DSM 13855]
          Length = 302

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 105/276 (38%), Gaps = 23/276 (8%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +K   ++L++L      S  T ++Y  D + F     F   E IT   ++ +++ +IRAF
Sbjct: 1   MKLLDSFLRSLS-----SSQTRRAYRTDLQAF-----FSQAEDITADLVQAITHEDIRAF 50

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +       +   + +R L+ ++SF  +    +I   +   +  ++K       + + +  
Sbjct: 51  VETMHDLDLAAGTQRRRLAALRSFFDWAMTERIYDRNPARH-PDVKPMPPADASSSVRSL 109

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQG 192
             L     L  +  +     R+ AI+       LR SE  ++  ++   +     L +  
Sbjct: 110 TKLEVRDTLEAAGASDETGLRDQAIILTTIHAALRRSEIAAVAVEDVRPLGRYWILEVNP 169

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI----RGKPLNPGVFQRYIR 248
           +G     V +   V   I         D       PL+R +    RG+PL+       +R
Sbjct: 170 EGTGEEYVRIPDQVVSVI-----DNVKDQFGLTAGPLWRSMSNRNRGEPLSADAIYTIVR 224

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
           +     G+  S T  TLR +        G  L  IQ
Sbjct: 225 RAGTAAGVG-SITIDTLRRTGLRLAADGGASLSQIQ 259


>gi|158314469|ref|YP_001506977.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158109874|gb|ABW12071.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 377

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 60/328 (18%), Positives = 113/328 (34%), Gaps = 48/328 (14%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRS 87
           R L   T+ +       F+ F   Y             +   +  + +     + +   +
Sbjct: 51  RRLDPRTIHARAHVITGFVAFTNEYPWR---------WTAGMVDEWSTYLTAERGLAVST 101

Query: 88  LKRSLSGIKSFLKY-----------------LKKRKITTESNILNMRNLKKSNSLPRALN 130
           +++    ++ F  +                     ++  E N +      +     R L 
Sbjct: 102 VRQYQGSLRLFCDFVTSPFYGWVEECETRFGTHPVQVCHEWNTVLHLAEYEGRPGRRPLT 161

Query: 131 EKQALTLVDNVLLHTSHETKW------IDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
            ++   L D          +          R++ +L ++YG GLR +EA  +   +   +
Sbjct: 162 REEVQLLFDYADDRVDQAVRRRRKGALPAYRDATVLKVIYGWGLRCNEASRIDLVDFYRN 221

Query: 185 Q--------STLRIQ------GKGDKIRIV-PLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
                      L ++      G G + R V  ++P   +A+ ++ D     +       L
Sbjct: 222 PKAPELGRFGLLHVRYGKGANGSGPRRRTVASVMPWAVEAVEDFVDNVRPRMGSREHPAL 281

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           +   RG  L P   +      R  L LP   T H LRHS+ THL+ +G D + +Q  +GH
Sbjct: 282 WVTERGGRLKPREIEERFAAYRDALALPTELTPHCLRHSYVTHLIEDGADPKFVQEQVGH 341

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              ST  IYT+V+       M    +  
Sbjct: 342 RYASTLGIYTHVSEGFMNAMMRTALETA 369


>gi|332829687|gb|EGK02333.1| hypothetical protein HMPREF9455_01603 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 439

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 109/296 (36%), Gaps = 27/296 (9%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKI 83
           L +    +  T   Y+   R    F+ F    K++  T++ L  T I  F    R  Q+ 
Sbjct: 125 LRVGVNRAAGTYYHYKNVYRLVSQFIKFRY--KVSDVTLKSLDCTFIENFDYYLRVDQRQ 182

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
              +++ +++ +KS +     +   T     + + +K        L   +   L++    
Sbjct: 183 KPNTIRGNMNCLKSVVYSAIHKGYITVHPFADFKVVKPEKKQ-LHLTSDEFSRLMNTTF- 240

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRI---QGKGDKIRI 199
                          +       G+   +  +LT  N+  D+   L I   + K      
Sbjct: 241 -----DTPNRNFTRDMFLFSAFTGICYCDMRNLTETNVTKDRNGKLWIETHRQKTGTPEN 295

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           V +L    K + +Y  +               G     L+   +  +++ + +  G+  +
Sbjct: 296 VMMLDIAIKIMEKYKGMAEG------------GKLFPMLSKESYNMHLKIMAKQCGIKRN 343

Query: 260 TTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            + H  RH+FA+   LS G  + ++   +GH  ++TTQ Y  V ++     + +++
Sbjct: 344 LSYHMARHTFASLVCLSQGVPIETLSRAMGHKNITTTQRYAKVTTEKIDKDVTDLH 399


>gi|312114222|ref|YP_004011818.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311219351|gb|ADP70719.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 393

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 60/285 (21%), Positives = 112/285 (39%), Gaps = 24/285 (8%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           L   T +SY    R        + +       I  +  T +  F ++        R+   
Sbjct: 113 LKPRTRESYGTIIR-------LHLKPAFGATPIADIRKTSVATFHARHAE---TPRNANH 162

Query: 91  SLSGIKSFLKYLKKRKIT--TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           +LS +   + + +++ +     +   N+R  +++    R L+  +   L     L  + +
Sbjct: 163 ALSVLSKIMNWAEEQGLRPAESNPCRNIRKYRETKRE-RYLSPDELARL--GAALAAAED 219

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
            K +D    A + LL   G R+SE L+L    +   +  L +       +++PL  +   
Sbjct: 220 DKTVDPYIIAAIRLLLLTGARLSEILTLRWTYVDTYRRILNLPDSKTGAKVIPLNQAALD 279

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            +          LN N  + + R      +N    Q+  R++R+  GL      H LRHS
Sbjct: 280 LL-----GTLPRLNSNPFVLVGRVEGQHLVN---LQKPWRRIRKEAGLD-DVRIHDLRHS 330

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           FA+  +  GG L  I  +LGH + +TT  Y +V  K   + +   
Sbjct: 331 FASVSVGLGGSLPVIGRVLGHSQPATTARYAHVADKVAAELVEAA 375


>gi|298253182|ref|ZP_06976974.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
 gi|297532577|gb|EFH71463.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
          Length = 298

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 60/290 (20%), Positives = 114/290 (39%), Gaps = 41/290 (14%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +WL+ LE   G ++ T++           +       ++  Q    ++  ++    +   
Sbjct: 40  HWLEYLEAS-GYTEDTIR---------CRYYKISRLARLLNQPPEDITGQQLVELFAH-- 87

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q     + K   S I+SF  Y+ + +I   +  + +  ++K  ++P    +      + 
Sbjct: 88  -QDWKRETRKGYSSTIRSFYSYMIEEEIIDVNPTVKLPKIRKEYAIPHPCPDYIIRGALA 146

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQGKGDKI 197
            V  +  +E         A+L L   CGLR SE   ++  +  +++    L + GKG K 
Sbjct: 147 RVRGNKEYE---------AMLRLGAECGLRRSEIAQVSSSDIMMLNTHPQLLVHGKGRKE 197

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R VP+ P + + I             N    +F G     +       +I QL     L 
Sbjct: 198 RTVPIAPDLAQII------------ANKHGYMFPGRWTGHVEASYIAHHISQL-----LG 240

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
              + H+LRH + T    +  DL  +  +LGH  + TTQIY ++   +  
Sbjct: 241 NGYSTHSLRHRYDTKAYESTHDLLLVSKLLGHASVETTQIYISLTFPDSS 290


>gi|261878741|ref|ZP_06005168.1| integrase [Prevotella bergensis DSM 17361]
 gi|270334751|gb|EFA45537.1| integrase [Prevotella bergensis DSM 17361]
          Length = 293

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/276 (20%), Positives = 101/276 (36%), Gaps = 19/276 (6%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           + I I TI +  + E R F+ KRR   +   ++  +L  +   +     ++I   +   N
Sbjct: 2   QDIPIGTITEDLFEEYRFFLKKRR---LKASTINSNLCWLSRLMFRAVSKRIIRCNPFEN 58

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
            +  K    + R L +   + ++   +     E          +       GL IS+  +
Sbjct: 59  AKFEKVEKKI-RFLQKSDVMKVMAMKMNDKEAELA------RLMFVFSCFTGLAISDMEN 111

Query: 176 LTPQNIM---DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           L  ++I    D Q  +R  + K     IVPL P     I                     
Sbjct: 112 LEYKHIQTAADGQMYIRKERQKTKVEFIVPLHPIAETIISHCRKEPERSEVQQTVKEKGD 171

Query: 232 GIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
            +      +  V    +  + +  G+    + H  RH+F T  LS G  + SI  ++GH 
Sbjct: 172 HLVFHRDCSRSVMDAKLSIVGKACGIRQRLSFHMARHTFGTMSLSAGIPIESIAKMMGHA 231

Query: 291 RLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
            +S+TQ+Y  V  +   + M  +  +       KDK
Sbjct: 232 SISSTQVYAQVTDRKISEDMDRLIAKY----KAKDK 263


>gi|315608525|ref|ZP_07883511.1| phage integrase family site-specific recombinase [Prevotella buccae
           ATCC 33574]
 gi|315249797|gb|EFU29800.1| phage integrase family site-specific recombinase [Prevotella buccae
           ATCC 33574]
          Length = 267

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/297 (13%), Positives = 108/297 (36%), Gaps = 35/297 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++   L  E  +++ T+ +Y      +        +  + +          I  F   
Sbjct: 2   VESFKTALR-ESNMAENTISAYIYAVNDYFSKYKMLNKRNLLL-----YKANIIEMF--- 52

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                   +++   +  +  FL+++       +   L ++++K           +  ++ 
Sbjct: 53  ------SPKTVNLRIQALNKFLEHI-------DKPKLRLKSVKVQQRT----YLENVISQ 95

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            D + L    + +  +     ++  L   G R+SE + +  +++        I  KG K+
Sbjct: 96  ADYIFLKKKLKQE-ENLMWYFVVRFLTTTGARVSELIQIKVEHVHI--GYFDIYSKGGKV 152

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R + +   +R+   ++     F         +FR   G+ +      + ++      GL 
Sbjct: 153 RRLFIPKRLREETEKW-----FKETQQSTGYIFRNRFGERITTRGISQQLKNYAERYGLN 207

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            +    H+ RH +A + L    D+  +  ++GH  + TT+IY    +      + ++
Sbjct: 208 ANVVYPHSFRHRYAKNFLEAFNDIALLADLMGHESIETTRIYLRRTASEQQAIVDKV 264


>gi|268611875|ref|ZP_06145602.1| hypothetical protein RflaF_20511 [Ruminococcus flavefaciens FD-1]
          Length = 465

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/324 (18%), Positives = 120/324 (37%), Gaps = 47/324 (14%)

Query: 8   EIVSFELLKER-QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           E  S  LL +    WL  ++    +++ T   Y   +++++ ++     E     T+ Q+
Sbjct: 85  ETASTMLLDDFFTEWLTYIKP--NVARTTHLCYRKVSKRYMEYIN----ENYPNLTLGQV 138

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           ++  I+ +++ +        + K+    + S   Y  K ++  +  +  +   +      
Sbjct: 139 NHNHIQNYLNYKLDSGCKGSTAKQYYLALHSAFAYAVKMELIPKHPMDKLVVPRAERHEA 198

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
              N  +   L +           +   +   ++ +    GLR  E L L    I     
Sbjct: 199 TFYNADELNELFEV----------FKGDKLELVVNIAAYYGLRRCEILGLRWDAIDFKNK 248

Query: 187 TLRIQGK---------------------GDKIRIVPLLPSVRKAILEYYDL-------CP 218
           T+ IQ K                         R +PL+P + + +LE   +       C 
Sbjct: 249 TITIQRKIVSDYDDNGEIKIFVETRLKTNSTRRTLPLIPHIEEMLLEKKKMEVKFKKACG 308

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
              N      + R   G  ++PG   ++   +    GL      H LRHS A+ LL++  
Sbjct: 309 KSYNKEFDGFICRDNYGNMISPGYVTQHFHYIITRNGL-KHLRFHDLRHSCASLLLAHDV 367

Query: 279 DLRSIQSILGHFRLSTTQ-IYTNV 301
            +++IQ  LGH   S T  +Y+++
Sbjct: 368 PMKAIQEWLGHSNFSITANLYSHL 391


>gi|134300616|ref|YP_001114112.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134053316|gb|ABO51287.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 367

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/305 (15%), Positives = 121/305 (39%), Gaps = 40/305 (13%)

Query: 20  NWLQN--LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++L      I+  + + T ++Y    ++         +E +    + +L    ++  +++
Sbjct: 65  DYLDYWLKRIQPSIEERTFKTYSWHLKRL--------KETLGDIELGELKVLLVQERLNE 116

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            +   I + S+++  +  ++ L+     ++  +   + +R  +      + L+  + +  
Sbjct: 117 LKD--ISETSVRKITTTFRTALRQAVVWELLEKDPTVGLRLPRNPKKEKKVLSSDELIKF 174

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI------- 190
           ++             + +   +L +L   G+R+ E L L  +++  D+ T++I       
Sbjct: 175 LNA----------AKEYKYYLVLRILAVTGMRLGECLGLMWKDLNFDKGTMKILRSADSK 224

Query: 191 -------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPG 241
                         R V +     + +  +          ++ I+  L   + G+P+   
Sbjct: 225 TRKVLDKPKNDSSRRTVTIDKETVELLKTHRKKQAKRKVTSIRIEDELVFHVNGRPITHK 284

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTN 300
              R I+   +   LP+    H LRH+  + LL  G  L ++ S+LGH   +TT  IY++
Sbjct: 285 AIDRTIKTALKKAELPM-IRIHDLRHTAGSILLDAGYSLPTVSSLLGHSTPATTAAIYSH 343

Query: 301 VNSKN 305
              ++
Sbjct: 344 AIRRD 348


>gi|325474567|gb|EGC77753.1| phage integrase family Site-specific recombinase [Treponema
           denticola F0402]
          Length = 269

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 111/295 (37%), Gaps = 35/295 (11%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++ + L+    LS+ TL SY    + +                   +S   + A+     
Sbjct: 6   SFEEYLKKS-NLSQNTLTSYLWTVKYYTEHY-------------DSVSKENLLAYKGYLI 51

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                 +++   + GI  +L+++ K ++        ++ +K        L  +  ++  D
Sbjct: 52  EF-FKPKTVNLRIQGINKYLQFIHKDQL-------QLKFVKVQQK--NFL--ENVISNAD 99

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              L +S +          +++ L   G R+SE + +  +++        +  KG K+R 
Sbjct: 100 YQFLKSSLKRDGNREW-YFVVWFLAATGARVSELIQIKVEHVKL--GYFDLYSKGGKLRR 156

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           + +   +++  L++ +    +        LF     K +      + ++   R  G+   
Sbjct: 157 LYIPKILKEEALQWLESIRRE-----SGYLFLNRFEKHITTRGIAQQLKNYARKYGISEK 211

Query: 260 T-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
               H+ RH +A + L    D+  +  ++GH  + TT+IY    +    + +  I
Sbjct: 212 VVYPHSFRHRYAKNFLEKFNDISLLADLMGHESIETTRIYLRRTASEQRELVDSI 266


>gi|319428591|gb|ADV56665.1| integrase family protein [Shewanella putrefaciens 200]
          Length = 389

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 99/282 (35%), Gaps = 22/282 (7%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR----TQKIGDRSLKRSL 92
            +Y       +    ++   ++T + + +      R ++           +   +     
Sbjct: 112 SNYSIWISAGIHLHRYHRHAELTFEQVDKYFLEGFRHYLQHEAITKSDTGLSRNTACSYF 171

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           + I++ L   ++ +I  ++ +  ++++K   +    L   +   L           TK  
Sbjct: 172 NKIRAALNQAQRDRIIRDNPVEQVKSIKAERTQRTYLTLDEVKAL-----------TKAE 220

Query: 153 DARNSAILYLLYGC--GLRISEALSLTP-QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              +      L+ C  GLR S+   L   +  +  Q   RI     K++           
Sbjct: 221 CRYDVLRRAFLFSCTTGLRWSDIHKLVWGEIELFAQGHYRIIFSQIKLKNSGNGLQYLDL 280

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
                 L   +        +F+G+R    +       + Q     G+    T H  RH+F
Sbjct: 281 PDSAVRLLNLENKGKPTERVFKGLRYDSYS----NVALVQWAIRAGITKHVTFHAGRHTF 336

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           A + L+ G D+ S+  +LGH  L TT+IY ++      + M 
Sbjct: 337 AVNQLARGLDIYSLSRLLGHSELRTTEIYADILETRRTEAMR 378


>gi|221198795|ref|ZP_03571840.1| site-specific recombinase, phage integrase family [Burkholderia
           multivorans CGD2M]
 gi|221181246|gb|EEE13648.1| site-specific recombinase, phage integrase family [Burkholderia
           multivorans CGD2M]
          Length = 462

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 63/330 (19%), Positives = 125/330 (37%), Gaps = 42/330 (12%)

Query: 16  KERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           KE +  +    +ERG  LS LT      D   +  F+   T  +  +   R  +  E R 
Sbjct: 141 KEAERLILWAIVERGRALSSLT----TDDAIAYRAFIRRPTPRERWVGPPRPRNSVEWRP 196

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F     +  +  RS   +L+ + +  ++L +++    +    ++   + ++L  AL+  +
Sbjct: 197 F-----SGGLSARSSAYALTVLSALFRWLIEQRYVLANPFAGVKV--RGHALRPALDTTR 249

Query: 134 ALTLVDNVLLHT-SHETKWIDARN-------SAILYLLYGCGLRISEALSLTPQNIMDDQ 185
             +  + +LL T +   +W    +         +L   Y  GLR +E +  T  ++  D+
Sbjct: 250 GFSEGEWLLLRTIADGLEWSYGWSVPAAQRLRFLLDFGYATGLRANELVGATLGDVHVDE 309

Query: 186 S---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL------------- 229
                L + GKG K   V L P  R A+ +        +      P              
Sbjct: 310 RGNQWLHVTGKGGKRARVALPPLARDALDQCLVQRQLSVTPEQWNPRTSLVANLGEDGDA 369

Query: 230 -FRGIRGKPLNPGVFQRYIRQLRRY----LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
              G R   +    F +    ++             + H +RHS A+H L+ G  L +++
Sbjct: 370 GIVGARLWHVMRRFFLQAADIIKSAHPALAEKLQRASPHWMRHSHASHALARGAGLTTVR 429

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
             L H  ++TT +Y + +       + + +
Sbjct: 430 DNLRHASIATTSMYLHGDDILRAREINQAF 459


>gi|319784519|ref|YP_004143995.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317170407|gb|ADV13945.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 364

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 84/249 (33%), Gaps = 24/249 (9%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           +       + +   I   R +   + ++ R ++ +   L+   K            R  K
Sbjct: 76  ERFSAFDQSTLDNLIGTLRQRGNSNATINRKMAALSKLLRKAHKMGDIHSLP--EFRRQK 133

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +     R L   +   L   +   +             +   L   G R+ EAL L   +
Sbjct: 134 ERAGRIRFLERDEEARLFAAIKSRSEDA--------YRLSVFLVDTGCRLGEALGLIWND 185

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I + + +  I  K  + R +P+   V++ I                           L+ 
Sbjct: 186 IQEHRVSFWI-TKSGRSRTIPMTERVKEVIKLPPTEGRRPKGP-----------FTKLSQ 233

Query: 241 GVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             F+      +  +GL        H LRH+ A+ L+  G D+R +Q  LGH  LS T  Y
Sbjct: 234 AQFRAIWNDAKAEVGLGADDQVVPHILRHTCASRLVQGGIDIRRVQMWLGHQTLSMTMRY 293

Query: 299 TNVNSKNGG 307
            ++ + +  
Sbjct: 294 AHLATNDLD 302


>gi|256840951|ref|ZP_05546459.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
 gi|256738223|gb|EEU51549.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
          Length = 419

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/287 (19%), Positives = 108/287 (37%), Gaps = 29/287 (10%)

Query: 32  SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K TL+ Y    +    FL   Y  + I ++ +     ++   F+  R  +     ++  
Sbjct: 138 AKGTLEKYRIVYKHLQEFLDIRYHVKDIALKELTPAFISDFEMFL--RTDKHCCTNTVWL 195

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +  +++ +      +  T         +KK  +    L +++   L++  L +   E  
Sbjct: 196 YVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKEEIRLLMEGKLKNAKQE-- 252

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRI-QGKGDKIRIVPLLPSV 206
                   +       GL  S+  +LT +N     D+   + I + K   +  + LL   
Sbjct: 253 ----LYRDLYLFCAFTGLSFSDMRNLTEENIRTYFDEHEWININRQKTGVVSNIRLLDIA 308

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            + I +Y  LC                R  P+ +       IR + +  G+    T H  
Sbjct: 309 NRIIGKYRGLCE-------------NGRIFPVPHYNTCLAGIRAVAKRCGITKHITWHQS 355

Query: 266 RHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           RH+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +     M 
Sbjct: 356 RHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDME 402


>gi|242371734|ref|ZP_04817308.1| bacteriophage integrase [Staphylococcus epidermidis M23864:W1]
 gi|242350520|gb|EES42121.1| bacteriophage integrase [Staphylococcus epidermidis M23864:W1]
          Length = 402

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/293 (16%), Positives = 100/293 (34%), Gaps = 39/293 (13%)

Query: 52  FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111
            +  E+   + I+ ++  + + F++    Q      +   ++      KY    K+    
Sbjct: 104 HHAIERFNNKPIQTINKHDYQRFVNDISAQ-YSKNYIDSIIASTNMIFKYAYDMKLIRIM 162

Query: 112 NILNMRNLKKSNSL---------PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
               ++  KK  S+          + L + +    ++    H S +  +       +   
Sbjct: 163 PSEGIKRPKKKVSVEELEDTEIHKKFLEKDELFQFLEIAKNHHSPQNSFE------VFCT 216

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV------------------PLLP 204
           L   G+R  E L+L   +I  + +T+ I                            P+ P
Sbjct: 217 LAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNNNKKQYQILTPKTESSIGKIPVDP 276

Query: 205 SVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LST 260
            V K +  Y           + +    +F  + G PL     Q +I+ + +   +     
Sbjct: 277 HVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYPLVIKKLQLWIKAILKKTDITNKQI 336

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMME 312
           + H+ RH+    L+  G  ++ IQ  L H  ++TT  IY  + +    D   +
Sbjct: 337 STHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKITNSYKKDASQK 389


>gi|170735536|ref|YP_001774650.1| integrase family protein [Burkholderia cenocepacia MC0-3]
 gi|169821574|gb|ACA96155.1| integrase family protein [Burkholderia cenocepacia MC0-3]
          Length = 578

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 69/339 (20%), Positives = 122/339 (35%), Gaps = 51/339 (15%)

Query: 16  KERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           KE +  +    +ERG  LS LT +    D   +  F+   T  +  +  +R     + R 
Sbjct: 247 KEAERLILWAIVERGRALSSLTTE----DALAYRAFIRRPTPHERWVGPVRPRGAPDWRP 302

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F     +  +  RS   +LS + +  ++L +++    +    ++   +      AL+   
Sbjct: 303 F-----SGALSARSAAYTLSVLGALFRWLIEQRYLLANPFAGVKV--RDTRGATALDTSH 355

Query: 134 ALTLVDNVLLHTSHE-----------------TKWIDARNSAILYLLYGCGLRISEALSL 176
           A T  + +L+ T  +                 T     R   IL   Y  GLR SE +  
Sbjct: 356 AFTEGEWLLVRTIADGLEFGKRTADGAPQSGWTPAAAQRLRFILDFGYATGLRASELVGA 415

Query: 177 TPQNIMDDQS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLF 230
           T  +I  D      L++ GKG K   V L P  R A+  Y       +         PL 
Sbjct: 416 TLGDIETDAHGDAWLKVIGKGSKAARVALPPLARTALDRYLVARRLPVTPVRWRPDTPLI 475

Query: 231 RGIRGK---PLNPGVFQRYIRQLRRY------------LGLPLSTTAHTLRHSFATHLLS 275
             +       +      + +++                       + H +RH+ ATH L+
Sbjct: 476 PRLAEDDAAAITSVRLWKVMQRFFAQTADAVEADHPALAHKLRQASPHWMRHTHATHALA 535

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            G +L +++  L H  +STT IY + +       M   +
Sbjct: 536 RGAELTTVRDNLRHASISTTSIYLHGDDVKRARQMSSAF 574


>gi|255690107|ref|ZP_05413782.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM
           17565]
 gi|260624389|gb|EEX47260.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM
           17565]
          Length = 429

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/291 (18%), Positives = 117/291 (40%), Gaps = 27/291 (9%)

Query: 17  ERQNWLQNLEIERGL-SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +   + + L+ +R   S  ++Q      R+  +   +   + +   +I      + + ++
Sbjct: 130 DFIKYFEELKDKRHKNSSKSIQ--VNWNRELALLKLYTDGKPLLFGSIDLNLIEDYKDYL 187

Query: 76  SKR-----RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
                   +T  I   +     S  K+ L+        T      ++N+    S    L 
Sbjct: 188 INAPQGGSKTGTISANTASTYFSIFKAGLRQAFIDGYLTIDLAAKVKNIYYEESQREYLT 247

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            ++      N L  T  +++ +  + +A+   L   GLR S+   L  ++I+ D+   ++
Sbjct: 248 LEEL-----NQLAATPCDSEIL--KRAALFSAL--TGLRHSDIKQLKWRDIVKDKEHYQL 298

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
                K + V  +P   +A              +    +F G++    +P    R +++ 
Sbjct: 299 HFTQQKTKGVEYMPISDQA------YSLCGERGDADRLVFEGLQ----DPSWINRPVKRW 348

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               G+    T H  RH++AT  L+NG D+ ++  +LGH +++TTQIY  +
Sbjct: 349 VEASGITKHITFHCFRHTYATLQLTNGTDIYTVSKMLGHKKVTTTQIYAKI 399


>gi|315173382|gb|EFU17399.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX1346]
          Length = 387

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 58/333 (17%), Positives = 114/333 (34%), Gaps = 41/333 (12%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKIT 59
           E N + +  S    +    WL+N        K T++  SY      F   +  +  +   
Sbjct: 57  ERNGIKQSSSITFQEIAVLWLENY-------KNTVKDSSYSRTNIIFNKHIFPHFGK--- 106

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
              I +++    +  ++   T     +     L+ +    K+     +T E+   N+   
Sbjct: 107 -IEIAKINTAYCQKIVNNWHTNGTSKQ-YPLFLNYMNKVFKFAINMGVTAENPTTNVIIP 164

Query: 120 K------KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
           K        ++  +  N+ Q    ++  +     E  +I  R+  +  LL   G RI E 
Sbjct: 165 KNKETANPKDTKIKFYNKDQLQKFLE-CIHQQPQENNYITIRDYTLFRLLSFSGCRIGEL 223

Query: 174 LSLTPQNIMDDQSTLRIQGK---------------GDKIRIVPLLPSVRKAILEYYDLCP 218
           L+LT  ++  +   L+I                      RI+ L     + + ++     
Sbjct: 224 LALTWDDLNLETGELQINKTVTKSDKYYVSSTPKTKKSNRIIILDRITLECLKKWRSEQK 283

Query: 219 ---FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
              F L       +F     +           +  ++   LP +   H  RH+ A+ L +
Sbjct: 284 KFLFKLGFTQPSRIFTNDSNEFTINQSVTERYKIYQKKANLP-NIGLHGFRHTHASLLYN 342

Query: 276 NGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGG 307
            G D + +Q  LGH  + TT   YT++      
Sbjct: 343 AGADHKEVQERLGHANIKTTLDTYTHLTDDRKE 375


>gi|186687006|ref|YP_001870395.1| integrase-recombinase protein [Nostoc punctiforme PCC 73102]
 gi|186469630|gb|ACC85427.1| integrase-recombinase protein [Nostoc punctiforme PCC 73102]
          Length = 330

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/282 (20%), Positives = 112/282 (39%), Gaps = 27/282 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE----IRAFISKRRTQKIGDRS 87
           S  T + Y+ D + F +F+A     +  +     L        +  + +    +K+ + +
Sbjct: 42  SLNTKREYQKDLKDFFLFVAKKEPRRDLVLQFLHLEQRHAVAVVLKYKAHLIKKKLAEAT 101

Query: 88  LKRSLSGIKSFLKYLKKRKI----TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
           + R LS IKS ++  ++  +      +     +   + +  +P A +    + LVD  +L
Sbjct: 102 VNRRLSAIKSMVEMGRRLGVCNFSLDDVKGEKVETYRDTMGIP-AEDYALVIALVDRSIL 160

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--QGKGDKIRIVP 201
                      R+ AI+ LL+   LR +E ++L   +    + TL I  +GKG +  ++ 
Sbjct: 161 K--------GKRDYAIMRLLWDNALRRNEIVNLNVLDFNAKEKTLFILGKGKGSQKEVLD 212

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLP 257
           L      AI  +              PLF  +        L     +R +  L +  G+ 
Sbjct: 213 LSEKTTDAIASWIKAS---KKKRSNEPLFTVLAYHKNGARLTGEAIRRLVDGLCKQAGIT 269

Query: 258 LSTTAHTLRHSFATHLLS-NGGDLRSIQSILGHFRLSTTQIY 298
              + H +RHS  T +L  N G+ R+ Q    H ++ T   Y
Sbjct: 270 KKMSPHRVRHSAITTVLDLNNGNYRATQRFSRHAQVQTVLKY 311


>gi|330830137|ref|YP_004393089.1| phage integrase [Aeromonas veronii B565]
 gi|328805273|gb|AEB50472.1| Phage integrase [Aeromonas veronii B565]
          Length = 321

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/273 (18%), Positives = 94/273 (34%), Gaps = 38/273 (13%)

Query: 47  LIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-----QKIGDRSLKRSLSGIKSFLKY 101
             +L        T +         +   I+ RR      Q +   ++ R  + +++    
Sbjct: 69  CHYLGDPLAVNFTARDFAAYREARLSGDITDRRAINQEKQGVTPNTVNREHAYLRAVFNE 128

Query: 102 LKKRK-ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
           LK+     +E+ +  +R  K + +    L   +   L+           +  +     ++
Sbjct: 129 LKRLGEWQSENPLDGLRAYKVAEAELAFLYPDELKRLLAAC-------AESPNPDLLLVV 181

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
            L    G R SE   LT   +  ++ T   + K  K R VP+ P +   +         D
Sbjct: 182 KLCLATGARWSEVEELTQSQVSPNRITFT-RTKSKKSRSVPISPELYAQLPRKRGRLFSD 240

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGG 278
                                   R    +    GL  P     H LRH+FA+H + NGG
Sbjct: 241 ----------------------CYRAFEMVVERAGLELPAGQNTHVLRHTFASHFMMNGG 278

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           ++  +Q ILGH  ++ T  Y +    +  D + 
Sbjct: 279 NILVLQKILGHSTIAMTMRYAHFAPDHLEDAIR 311


>gi|303241363|ref|ZP_07327867.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302591096|gb|EFL60840.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 377

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/304 (20%), Positives = 111/304 (36%), Gaps = 40/304 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           L   T  SYE  +R  +I         I    +++L   +I+   +KR  +     S+ +
Sbjct: 86  LKPKTYDSYESLSRITIIPH-------IGDLPMQKLKTKDIQEMYNKRYEEGYSSNSIHK 138

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
               +KS L         +++    +   +      +A + +             + E  
Sbjct: 139 VNIVLKSALNKAITEGYISKNPANFVELPEIIKKDIKAFSAED----------QKAFEQA 188

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
             D  +     +    GLR+SE L+LT  NI  D++ L +      +R        +  +
Sbjct: 189 AKDYSHYIAYIVNLDTGLRMSELLALTWDNIDFDKAELTVNKNLVSVRDREKEDGFKLIV 248

Query: 211 LE-----YYDLCPFDLNLN--------------IQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            E      Y +    L                     +F    G  L P  + R  +++ 
Sbjct: 249 QENTSKTKYSIRTIPLTKRCISLLRKLKIKQQANSNIVFCSKLGTHLTPRNYSRTFQRIV 308

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNV--NSKNGGD 308
           +   + +    HT+RH+FAT L   G   ++I  +LGH  +S T   YT+V  N+K    
Sbjct: 309 KKAKVEM-CNVHTMRHTFATRLFEAGVPPKTISELLGHASVSFTLDTYTHVMPNTKKQAI 367

Query: 309 WMME 312
            M+E
Sbjct: 368 DMLE 371


>gi|329963640|ref|ZP_08301114.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328528050|gb|EGF55031.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 379

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/295 (18%), Positives = 108/295 (36%), Gaps = 39/295 (13%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR---------TQKIGDRS 87
           ++ +   R  +  L  Y  + I    + ++    +  FI   R          +K+   +
Sbjct: 106 EARKNALRAVVHHLERYDSKGIL---LGKVDKAYVIGFIGYLRNAKQEHCKEEKKLHANT 162

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMR---NLKKSNSLPRALNEKQALTLVDNVLLH 144
                  ++  L +    +    + I  M+     K+  +    L   +   LV      
Sbjct: 163 QLHYFKMLRYCLNHAVSEEYIACNPIDKMKSDEKPKRRKADREYLTIDELRYLV------ 216

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS----TLRIQGKGDKIRIV 200
               T + ++           CGLR  + ++L  ++I  D +       +Q K  +   +
Sbjct: 217 ---RTPFYNSLLKKAFLFSCFCGLRHCDIVALEWKDIHYDTNGNASINIVQQKTHEAISL 273

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           PL P   K +       P          +F+G+    ++ G     + +  +  G+    
Sbjct: 274 PLSPEAVKYL-------PNREKAQDTDKIFKGL----ISLGRSNEILDRWAKQAGILKHV 322

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           T H  RH+ AT +L+ G DL +I  +LGH  + TTQIY  +  ++    +  I D
Sbjct: 323 TFHVARHTHATMMLTLGADLYTISKLLGHTNIQTTQIYAKLVDESKMKAIALIPD 377


>gi|108804749|ref|YP_644686.1| phage integrase [Rubrobacter xylanophilus DSM 9941]
 gi|108765992|gb|ABG04874.1| phage integrase [Rubrobacter xylanophilus DSM 9941]
          Length = 379

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/315 (18%), Positives = 116/315 (36%), Gaps = 45/315 (14%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
             WL++  +E  +   TL +Y+   R+       + +  +    ++ L+   ++    ++
Sbjct: 73  DRWLRD-SVEGNVGPRTLANYKLQVRR-------HIKPVLGEIQLKTLTPAHVQGLYRQK 124

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               +   S++   + +   L    +  +   +    +   K  +    AL  ++A   +
Sbjct: 125 LDAGLAPSSVRYIHAVLHRALTQALRWGLVPRNVSEAVDLPKLVSEEVDALTPEEARKFL 184

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQG--- 192
           D      +   ++      A++      G+R  E L L   +I   Q+   TLR+     
Sbjct: 185 D-----AARGDRFEALYVVAVM-----TGMRRGELLGLRWSDIDLGQNAPATLRVGRQLQ 234

Query: 193 -------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-----NIQLPLFRGIR 234
                        KG K R + L     +A+  +      +          +  +F    
Sbjct: 235 RMRDGSGLKFVAPKGGKGRTIRLPSRAVEALKAHRARQAEERLKAGPLYRDEGLVFASEV 294

Query: 235 GKPLNPGVF-QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           G PL P    +R  + L +  GLP     H LRH+ AT LLS G + + +Q +LGH  + 
Sbjct: 295 GTPLEPSNIDRRSFKPLLKKAGLP-DIRFHDLRHTCATVLLSQGVNPKFVQELLGHADIK 353

Query: 294 TTQ-IYTNVNSKNGG 307
            T   Y++     G 
Sbjct: 354 LTLGTYSHFLPSMGD 368


>gi|226349906|ref|YP_002777019.1| putative integrase/recombinase [Rhodococcus opacus B4]
 gi|226245821|dbj|BAH47088.1| putative integrase/recombinase [Rhodococcus opacus B4]
          Length = 399

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 79/298 (26%), Positives = 130/298 (43%), Gaps = 21/298 (7%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + S E+L    ++ + L  +RGL++ T+Q YE   R+FL      T           L+ 
Sbjct: 103 LTSTEVL--LDDYRRWLIEDRGLAEATVQRYERSARKFL-----LTGSDAGSVDPTALTG 155

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLP 126
           +++  ++      +    ++K  ++ +++ L+YL    +T       +  +   +  S+P
Sbjct: 156 SDVSGYLLA-EAGRCSVGAVKGRVAEMRALLRYLFVHGMTPTLLSGAIPPVAGWRETSIP 214

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R         L+D     T   +  + ARN A+L LL   GLR  E   L   +I     
Sbjct: 215 RYFARDDVDALLD-----TCDRSTALGARNFAMLMLLSMLGLRCIEIARLELDDIDWRSG 269

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQ 244
            LR++GK  ++  +PL   V  A+  Y               LF+  R   + + P +  
Sbjct: 270 HLRVRGKARRLDTLPLPHEVGDAVAGYLRDGRPH---TTDRHLFQTYRAPIRGIPPDLLS 326

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             +R+  +  GLP    AH LRHS AT LLS G  L  I  +L H  L+TT IY  V+
Sbjct: 327 DVVRRACKRAGLP-PAGAHRLRHSVATTLLSEGVALADISQVLRHHDLATTAIYAKVD 383


>gi|163816187|ref|ZP_02207555.1| hypothetical protein COPEUT_02371 [Coprococcus eutactus ATCC 27759]
 gi|158448607|gb|EDP25602.1| hypothetical protein COPEUT_02371 [Coprococcus eutactus ATCC 27759]
          Length = 426

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/336 (16%), Positives = 138/336 (41%), Gaps = 44/336 (13%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ- 81
           + L+ + G+ + T Q Y    R          +E    +TIR +  ++ + F+ K + + 
Sbjct: 94  RYLKTKTGVRQSTKQGYVTVQRLLA-------KESFGEKTIRSVKTSDAKLFLIKLQQED 146

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLKKSNSLPR-ALNEKQALTLVD 139
                S+      ++   +      I  ++     +  +  ++++ R A+++ Q    + 
Sbjct: 147 GKSYSSIHTIRGVLRPAFQMAVDDDILVKNPFGFQLAGVLVNDAVTREAISKDQMRKFLK 206

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            V          +  +   ++Y+L+  G+RISE   LT ++I  ++ T+ I  +  +   
Sbjct: 207 FV------HDDVVYCKYYEVVYILFHTGMRISEFCGLTLKDIDLEKRTVNIDHQLQRTSD 260

Query: 200 VPLLPSVRK-------------------AILEYYDLCPFDLNLN-IQLPLFRGIRGKPLN 239
           +  +    K                   AI+E  +    + +++     LF    G PL 
Sbjct: 261 MRYIIETTKTDAGTRVLPITEDVAEMFQAIIEDRNAPKVEKSIDGYSGFLFYDDNGIPLV 320

Query: 240 PGVFQRYI-RQLRRYLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              +Q      + RY  +      + T H  RH++ +++  +G + +++Q ++GH  +S 
Sbjct: 321 AMHWQHRFNHMIGRYNDIYRVQMPNITPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISV 380

Query: 295 TQ-IYTNVNSKNGGDWMMEI--YDQTHPSITQKDKK 327
           T  +YT++   +  + +  +  + +    I ++++K
Sbjct: 381 TMNVYTHIGFDDAEEELKRMEDFRKAQTEIEKENEK 416


>gi|160886644|ref|ZP_02067647.1| hypothetical protein BACOVA_04656 [Bacteroides ovatus ATCC 8483]
 gi|156107055|gb|EDO08800.1| hypothetical protein BACOVA_04656 [Bacteroides ovatus ATCC 8483]
          Length = 409

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 111/276 (40%), Gaps = 26/276 (9%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
                +F+     Y  + +    + +    + + F+++   +     + +  L+ +K   
Sbjct: 141 RLALGEFIKH--QYKVKDLAFGQLTEQFIHDYQTFVTE--DKGQAIDTARHYLAILKKIC 196

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           +   K     + +  +    KK+ + PRAL+ +    + D  +       +        +
Sbjct: 197 RLAYKEGHADKIHFQHFTLPKKTETTPRALSRESFEKIRDVEIPAY----RKSHMLARDM 252

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGDKIR-IVPLLPSVRKAILEYYD 215
                  G+  ++ +S+T  N+  D      L+ + K +++R  V LLP     I +Y  
Sbjct: 253 FLFGCYTGVSYADVVSITHANLQTDGDGALWLKYRRKKNELRASVKLLPEAIALINKY-- 310

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
                 +   +  LF  +R   L     +R+++ L    G+      H  RHSFA+ + L
Sbjct: 311 ------SSEDRETLFPLLRWPNL-----RRHMKALAALAGIKDDLCYHQARHSFASLITL 359

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
             G  + +I  +LGH  +STTQ+Y  V+ K   + M
Sbjct: 360 EAGVPIETISRMLGHSDISTTQVYARVSPKKLFEDM 395


>gi|150003228|ref|YP_001297972.1| transposase [Bacteroides vulgatus ATCC 8482]
 gi|149931652|gb|ABR38350.1| transposase [Bacteroides vulgatus ATCC 8482]
          Length = 411

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/297 (18%), Positives = 111/297 (37%), Gaps = 28/297 (9%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLK 89
            S +T+  Y+   ++  + +  Y  ++    T  +L+   IRAF    +T+  +   ++ 
Sbjct: 129 YSPVTINRYKNVVKKLQLLIPSYYGKE--DVTFHELTPEFIRAFDIYLKTEAGLCRNTIV 186

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R +   K F      ++   ++     + +++  + P  L   +  T++         E 
Sbjct: 187 RYMKCFKKFTNMALAKEWMRKNPFYGYK-MEQDETDPVFLTYDELQTVMKKKFTIPRLEL 245

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP----- 204
                    +       GL  S+  SL  +N++ D        KG               
Sbjct: 246 V------RDVFVFACFTGLAFSDVASLNKENLVQDNLGDWWIRKGRVKLEHRRKASSISN 299

Query: 205 ----SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
                V  AILE Y   P  +     LP+    +           Y++++  + G+  + 
Sbjct: 300 IPLLPVPLAILEKYKEHPTCIKKGCCLPVMCNQKM--------NSYLKEIADFCGIKKNL 351

Query: 261 TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           T H  RH+F T + L+N   L+ +  +LGH     TQ Y  V + +  + M  + ++
Sbjct: 352 TTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNTVKER 408


>gi|330995439|ref|ZP_08319345.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329575584|gb|EGG57119.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 411

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 58/292 (19%), Positives = 109/292 (37%), Gaps = 29/292 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K TL  Y    +    FL   Y  + I ++ +     ++   F+  R  +     ++  
Sbjct: 130 AKGTLLKYRTVYKHMQEFLDIRYHVKDIALKELTPAFISDFEMFL--RTDKHCCTNTVWL 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +  +++ +      +  T         +KK  +    L +++   L+D  L +   E  
Sbjct: 188 YVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKEEIRLLMDGKLKNAKQE-- 244

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRI-QGKGDKIRIVPLLPSV 206
                   +       GL  S+  +LT +N     D+   + I + K   +  + LL   
Sbjct: 245 ----LYRDLYLFCAFTGLSFSDMRNLTEENIRTYFDEHEWININRQKTGVVSNIRLLDIA 300

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            + I +Y  LC                R  P+ +       IR + +  G+    T H  
Sbjct: 301 NRIIGKYRGLCE-------------NGRIFPVPHYNTCLAGIRAVAKRCGITKHITWHQS 347

Query: 266 RHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           RH+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +     M  +  +
Sbjct: 348 RHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMENLAAR 399


>gi|318065836|ref|YP_004123868.1| gp46 [Mycobacterium phage Wee]
 gi|315420919|gb|ADU15920.1| gp46 [Mycobacterium phage Wee]
          Length = 367

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 100/303 (33%), Gaps = 29/303 (9%)

Query: 20  NWLQ-NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            WL+  +    G++K TL  Y    +  +  +       +    I  L+  +I A++   
Sbjct: 75  EWLERYINSRTGVTKTTLHDYSSYLKHDIAPV-------LGAIPIDLLTSDDIAAWVQGL 127

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +++  +++      + + L           +  +  R  +        L   +   L+
Sbjct: 128 AARELAGKTIANRHGFLSAALNAAVAAHEIPHNPAIGTRIPRTERKEMCFLTRDEFNLLL 187

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197
                               ++  +   G R  E  +L P ++    +T+ I +G     
Sbjct: 188 AQFAPRWQP-----------LVRFMVASGARFGEVSALRPADVDRTHNTVYIGRGWKRTY 236

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRY 253
                     K       +      L         LF    GKPL    F+  +      
Sbjct: 237 DGAGYELGAPKTKRSVRTISVHPALLGDLDYSGEFLFTNTVGKPLRAPGFRSNVWYPAVE 296

Query: 254 ----LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
                GL      H +RH+ A+ +++ G ++ ++Q  LGH  + TT  +YT+++  +   
Sbjct: 297 KACAAGLAKKPRIHDMRHTCASWMIAGGANMYAVQRHLGHESIQTTISLYTHLDRSDSER 356

Query: 309 WMM 311
              
Sbjct: 357 AAK 359


>gi|150399016|ref|YP_001322783.1| phage integrase family protein [Methanococcus vannielii SB]
 gi|150011719|gb|ABR54171.1| phage integrase family protein [Methanococcus vannielii SB]
          Length = 326

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/258 (22%), Positives = 105/258 (40%), Gaps = 19/258 (7%)

Query: 61  QTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLK---YLKKRKITTESNILNM 116
           +T   L+  +  AF +   R +   D ++ +    +K F +   Y       TES     
Sbjct: 68  KTPDTLTDKDYFAFFTYLKRERNCSDNTVNKYFKLLKVFYRLMKYSNFNDFVTESK-ERK 126

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           R  +       A++E    T++   LL  + +TK    R++  + LL+  G R+SE  +L
Sbjct: 127 RFSRFDIKHYDAIDEDTLNTIL-KKLLEANGDTK---IRDATFMRLLWDTGCRVSEVCNL 182

Query: 177 TPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           T      ++   ++   K  + R V       K +  +      D     +  LF+  RG
Sbjct: 183 TYSASDLNKGVFKLTNTKTKQDRTVVCSKETLKLLNYFLQ---HDSKNAPEDYLFKSGRG 239

Query: 236 KPLNPGV----FQRYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
             +N       F+  + +L++   +P +     H+LRH  A  LL  G  +  ++  LGH
Sbjct: 240 AKMNKYTLSARFRDIVVELKKNGTIPKNRWLVIHSLRHGRAVDLLGKGVPIDVVKEYLGH 299

Query: 290 FRLSTTQIYTNVNSKNGG 307
             + TT IY++   +   
Sbjct: 300 TSIETTLIYSHSTDRKNK 317


>gi|30019424|ref|NP_831055.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 14579]
 gi|229126686|ref|ZP_04255698.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BDRD-Cer4]
 gi|29894968|gb|AAP08256.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 14579]
 gi|228656626|gb|EEL12452.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BDRD-Cer4]
          Length = 370

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 106/271 (39%), Gaps = 31/271 (11%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           + +L+   ++ +++  R + +   ++++ +  I++ L++    ++ T++     +  K  
Sbjct: 107 LAKLTSLHMQNYVNSLRDEGLKRGTIEKIIKVIRNSLEHAIDLELITKNVAAKTKLPKAD 166

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
                  NE++    +              D R S + ++    G+R  E L L  +++ 
Sbjct: 167 KEELTVWNEQEVQLFLKA----------AQDGRYSIVFHMALVTGMRQGELLGLRWKDVD 216

Query: 183 DDQSTLRIQ--------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
            ++  L I                    +R + L  S    + ++  +   +     +  
Sbjct: 217 LEKGHLIISQTLSHDGKTFLVGGKTKSSLRKILLPASTIAKLKKHRAVILKEKLSQGEEY 276

Query: 229 -----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                +     G P+NP   +R +  L +   +P     H LRH+ AT LL+ G +++ I
Sbjct: 277 QDNDLVMCTPSGTPINPANVRRSLNALIQKAAVPK-IRFHDLRHTHATLLLAKGVNVKVI 335

Query: 284 QSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
              LGH  +  T   Y++V      D + ++
Sbjct: 336 SERLGHSNIKITLDTYSHVLPTMQEDAVNKM 366


>gi|253571485|ref|ZP_04848891.1| integrase [Bacteroides sp. 1_1_6]
 gi|251838693|gb|EES66778.1| integrase [Bacteroides sp. 1_1_6]
          Length = 420

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 98/260 (37%), Gaps = 19/260 (7%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           + I+++ +  +    +RA +   +   I   +     S +K+ LK     +  T      
Sbjct: 173 KAISVKLLEDIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEYLTVDISAK 232

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           ++ +        AL   +   LVD         T   D             GLR S+  +
Sbjct: 233 VKGITNIEKPRVALTMNEVQMLVD---------TPCKDDVLKRAFLFSILTGLRHSDIQT 283

Query: 176 LTPQN-IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           L  +      + T +      K +     P  ++A+         D  L     +F G+ 
Sbjct: 284 LKWKQIQQTSKGTWQAVVIQQKTKRPDYKPVTQQALQLCGIRPDDDEAL-----VFEGLT 338

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
               +     R ++      G+    T H  RHS+A+ LL NG D+ +I+S++GH  + T
Sbjct: 339 ----DASWISRPLKVWIEASGIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKT 394

Query: 295 TQIYTNVNSKNGGDWMMEIY 314
           TQIYT++ ++        ++
Sbjct: 395 TQIYTHIVNEQKEKAANTLH 414


>gi|251791810|ref|YP_003006531.1| integrase family protein [Dickeya zeae Ech1591]
 gi|247540431|gb|ACT09052.1| integrase family protein [Dickeya zeae Ech1591]
          Length = 379

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 111/301 (36%), Gaps = 30/301 (9%)

Query: 20  NWLQNL-EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           ++ +   E+    +  +  ++            ++   ++T + + QL     R ++  +
Sbjct: 95  SFFEYFQEVTDQKAAGSKSNHSIWISALKHLRQYHKLPELTFEEVDQLFLEGFRHYLMHK 154

Query: 79  RTQK----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
              K    +   +     + +++ L   ++ ++  ++ +  ++ ++   +    L E + 
Sbjct: 155 ARTKSGTPLSRNTQSAYFNKLRAALNQAEQERLLPDNPVRRVKAIQGEKNKRVYLTEDEV 214

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP---QNIMDDQSTLRIQ 191
             L          E ++   + + +       GLR S+   LT    +   D    +  Q
Sbjct: 215 RAL-------AQAECRYNVLKRAFLFSCC--TGLRWSDIHKLTWAELEPFYDHYRIVFTQ 265

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            K   ++ + L     + +                  +F+G++    +     R      
Sbjct: 266 KKTSGLQYLDLNDMAMQLM---------GRPGKATERIFKGLKYSAWHNMELTR----WA 312

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              G+    T H+ RH+FA   L+ G D+ ++  +LGH  L TT+IY ++      D M+
Sbjct: 313 LQAGITKKVTFHSARHTFAVIQLNRGVDIYALSRLLGHSELRTTEIYADILESRRRDAML 372

Query: 312 E 312
           +
Sbjct: 373 D 373


>gi|240146617|ref|ZP_04745218.1| phage integrase [Roseburia intestinalis L1-82]
 gi|257201240|gb|EEU99524.1| phage integrase [Roseburia intestinalis L1-82]
          Length = 398

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/350 (15%), Positives = 117/350 (33%), Gaps = 63/350 (18%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K    W+ N+  +  L+  T+++Y               +  I    I  +     +A +
Sbjct: 70  KWFNYWIDNIICD--LAPNTIRNYR-------ERYEKNIQPLIGTMCIADVKPMHCKAVL 120

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--PRALNEKQ 133
           ++  T+     +++++   + +  K      I  +  +  +R  K   ++   + L  ++
Sbjct: 121 NRMETE-YAGSTIRQTYISMGTMFKSAVMNDIIAKHPMNGVRYTKPVRAVDDIKYLTVEE 179

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG- 192
               ++                N     LL   GLR +E + LT   I   + TL +   
Sbjct: 180 QEKFLEAAERS----------HNYRQYALLLETGLRTAELIGLTWDAIDWKKRTLTVNKS 229

Query: 193 ----------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI----------- 225
                                R +PL       +   YD         +           
Sbjct: 230 LEYRHSRRYWRAGPPKTKKSYRTIPLTERAYTILKSCYDEKDTRKESEMLSQILEYTDSR 289

Query: 226 ---------QLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
                    +  +F   R  +P     +  ++ +L    G+      H LRH++AT  + 
Sbjct: 290 TGEKKCLVMRDLVFINWRTGEPAKNSSYDTHLYKLCDEAGI-KRFCMHALRHTYATRAIE 348

Query: 276 NGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQTHPSITQK 324
            G   + +Q +LGH  + TT   Y +V  ++    + + ++   P++ ++
Sbjct: 349 RGVQPKVLQQLLGHASIKTTMDRYVHVTDESLAKAVQQ-FEAATPTVEKR 397


>gi|297572206|ref|YP_003697980.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595]
 gi|296932553|gb|ADH93361.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595]
          Length = 260

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 104/244 (42%), Gaps = 28/244 (11%)

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           ++  +I  ++S          +     + IK+   +L+  +  T++ +L ++  ++    
Sbjct: 32  ITTDQIIEWVSLL----PSAVTKWTYFTHIKALFTWLEITRRRTDNPLLGLKAPRRPKYY 87

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           PR ++ +    +++  L   +            ++ L + CGLR+ E   +  Q+     
Sbjct: 88  PRPISLEVIEHVLNQRLYRKT----------RCMILLAFNCGLRVGEICKVRGQDYDRQA 137

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQ 244
             L ++GKG K  I+P+  +++          PF   +      F    G  + +  V  
Sbjct: 138 GLLTVEGKGGKRSIIPVNSALQ----------PFFNTMPAHGWWFPCRNGGHVRSRSVGD 187

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             +R  RRY    +   +H LRH+FAT LL+   DLR +Q ++ H  + TT +YT V   
Sbjct: 188 TIVRTFRRY---EVHMVSHQLRHTFATELLAADVDLRIVQLLMRHESIQTTALYTRVARA 244

Query: 305 NGGD 308
              +
Sbjct: 245 QQLE 248


>gi|295841276|dbj|BAJ07044.1| integrase [uncultured bacterium]
          Length = 393

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 103/248 (41%), Gaps = 32/248 (12%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSLKRSLSGI 95
           ++YE     FL F  +          I+ L   +IRA++      +K+   + K +++ +
Sbjct: 168 KTYEQWVCSFLQFNDWPE--------IKSLENRDIRAYLEHLAVYRKVSASTQKVAMNAL 219

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
            S  + +  R+ T         + +    +P  L++ +   L+  +             R
Sbjct: 220 ISLFREVLGRQ-TEAIGAYTRASPR--RRVPTVLSQAEVKHLLSAM-----------SGR 265

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY 214
              +  L+YG G+R+ E + L  Q++  D   + ++ GKG K R+VPL   +  A+    
Sbjct: 266 QRLMASLMYGTGMRLMECVRLRVQDVDFDYRQITVRMGKGGKDRVVPLPEKLPPALARKL 325

Query: 215 DLCPFDLNLNIQLP--------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           +            P        +F   R   ++    Q+ +R+  R   +    T+HTLR
Sbjct: 326 NGAEKLWTWQFVFPATRLSTDLVFGITRRHHIHETSLQKGVRKAARSAAVSKRVTSHTLR 385

Query: 267 HSFATHLL 274
           HSFATHLL
Sbjct: 386 HSFATHLL 393


>gi|237718114|ref|ZP_04548595.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229452535|gb|EEO58326.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 390

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 98/278 (35%), Gaps = 39/278 (14%)

Query: 51  AFYTEEKITIQTIRQLSYTEIRAFISKRRT-----------QKIGDRSLKRSLSGIKSFL 99
            +  E      ++ +++    R ++   R            + I + +  R L    + L
Sbjct: 126 KYLDETNKGFISLEEVNAEFCRGYVKFLRNFPNSHIKYGEPRPISENTASRYLGMFSTAL 185

Query: 100 KYLKKRKITTESNILNMRN-----LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
               ++ I   + +  +        K        L  ++  TL+       + ++   + 
Sbjct: 186 NNAVRQGIIRNNPMKELDARERIQPKDGKK--EYLTIEELRTLM-------ATDSYRPEV 236

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           + + I       GLR+S+   L P +I    D     I  +  K     ++P   +A   
Sbjct: 237 KEAFIFACF--TGLRLSDMYRLAPMHIFKTADGKGEYIDMEMQKTEKPVIIPLSEEA--- 291

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                         +P F      P    V  R +R+     G+    + H+ RH+F T 
Sbjct: 292 ---KRWLPKPRGNDIPFF----DIPTTQTVIGRALRKWAEAAGIEKHISFHSSRHTFGTM 344

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           +L+ G DL +   ++GH  + TT+IY  +  K   + +
Sbjct: 345 MLTLGADLFTTSKLMGHSNIQTTEIYAKIVDKKKEEAI 382


>gi|148381303|ref|YP_001255844.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 3502]
 gi|153933633|ref|YP_001385681.1| phage integrase family site specific recombinase [Clostridium
           botulinum A str. ATCC 19397]
 gi|153937845|ref|YP_001389087.1| phage integrase family site specific recombinase [Clostridium
           botulinum A str. Hall]
 gi|148290787|emb|CAL84921.1| putative integrase/recombinase [Clostridium botulinum A str. ATCC
           3502]
 gi|152929677|gb|ABS35177.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 19397]
 gi|152933759|gb|ABS39258.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. Hall]
          Length = 199

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 82/190 (43%), Gaps = 10/190 (5%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L +++A+ L + ++            R+ A+  + Y CGLR SE   +   +   D+ 
Sbjct: 10  KYLTQQEAIRLFNAIIFS----DNSHAVRDLALFRVAYRCGLRASEISLIKLDDYNADKG 65

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            L  +  KG     + L  + +KA+  Y        N      LF+  +  P++      
Sbjct: 66  DLYCKRLKGSNNNTIRLDATTKKALDTYIRDYKISCNSET---LFKSQKNNPISRQTLDY 122

Query: 246 YIRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            +++  +   +   +    HTL+H+ A HL  +  D++ +Q  LGH  +S T+IY    +
Sbjct: 123 LMKKYCKIANISDKSKHHFHTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEIYFQFTT 182

Query: 304 KNGGDWMMEI 313
           K      M++
Sbjct: 183 KQQEKMYMKL 192


>gi|119869100|ref|YP_939052.1| phage integrase family protein [Mycobacterium sp. KMS]
 gi|119695189|gb|ABL92262.1| phage integrase family protein [Mycobacterium sp. KMS]
          Length = 407

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/323 (17%), Positives = 108/323 (33%), Gaps = 54/323 (16%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + W+Q        +  T+  Y       L  +       +    +R +S+ +++ ++S  
Sbjct: 91  ERWIQTKAT---RAPKTVAGYRS----LLDVVVLPRWRDV---PLRDVSFEDLQQWVSGL 140

Query: 79  --------RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
                     + +    + ++   +   L+Y  K K    +    +   +K     R L 
Sbjct: 141 SVNGSTRFEGRGLSPSRVIQAHQVVSQVLRYAVKAKHLPANPADGIELPRKPEVEQRYLT 200

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD------- 183
            +Q   L                 R    + +L  CGLR  EA +L   ++         
Sbjct: 201 HEQLQRL------------AVASGRFRTFVLVLGYCGLRFGEAAALRVGDVNLSSRRIRI 248

Query: 184 --------DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
                    Q  +    K    R VP+   +   I         D        LF   RG
Sbjct: 249 RRSVTAVTGQGLVEGPTKNHSARTVPVPKFLAPLIETEVGGRVDD------ELLFPSRRG 302

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR-LST 294
             L  G  +         +G+    T H LRH+ A+  ++ G +++ +Q++LGH   + T
Sbjct: 303 GYLTEGEVRWVFDAAAVAVGVT-GLTPHELRHTCASLAIAAGANVKVLQTLLGHKTAMLT 361

Query: 295 TQIYTNVNSKNGGDWMMEIYDQT 317
              Y ++   + G  + + +D  
Sbjct: 362 LDRYGHLFPDDLG-RIADAFDDA 383


>gi|328911558|gb|AEB63154.1| putative tyrosine recombinase XerC-like protein [Bacillus
           amyloliquefaciens LL3]
          Length = 292

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 68/310 (21%), Positives = 126/310 (40%), Gaps = 38/310 (12%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  + ++  L      ++ T QSY+ D +    +L+           I +LS T ++ FI
Sbjct: 7   KLIEEYIFQLR----KAENTKQSYKRDLQLLNKYLSD------DELRIDRLSSTIVQLFI 56

Query: 76  SKR--------RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
                      + ++    S+ R  + I+SF  Y ++ +   +  I   +++  S   P+
Sbjct: 57  DALENGTIKTNKRERYKAASINRIYASIRSFCIYTEQFEAFKDIRITKTQHI--SELTPK 114

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS- 186
           +++     + +   +    ++ K I+ R+ AI+ +L   G+R+SE + L   ++    + 
Sbjct: 115 SVDVNYIES-IRKRIGDRKNKPKLINYRDLAIIDMLRLTGMRVSELVDLKKADLTLKGNP 173

Query: 187 -TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
             + I   KG K+R +P+     + I  Y +    D        +F     K L     Q
Sbjct: 174 YLIHINKSKGKKVRDIPISKEKFQYIRRYLESRNDD-----SEYVFVSRSNKKLTTRTVQ 228

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             + +           T H LRH+ AT L   G DL +I   LG   ++  Q YT    K
Sbjct: 229 MLLNEY--------EITPHMLRHTLATELAKRGWDLSTIARFLG-NTVAVVQRYTIPTEK 279

Query: 305 NGGDWMMEIY 314
              D   +IY
Sbjct: 280 QMADAAADIY 289


>gi|325661845|ref|ZP_08150466.1| hypothetical protein HMPREF0490_01202 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471823|gb|EGC75040.1| hypothetical protein HMPREF0490_01202 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 377

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 61/368 (16%), Positives = 139/368 (37%), Gaps = 67/368 (18%)

Query: 2   EGNNLPEIVSFEL-LKERQNWLQNLE--------------IERGLS------KLTLQSYE 40
           E + +PE    +L L+E++  +Q+L+              +ER LS        TL +Y+
Sbjct: 3   EADKMPEGKRADLSLREKERKVQSLQMQGITGSNITVLELVERYLSLKTGVKHNTLANYK 62

Query: 41  CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLK 100
                    +    +E+   + +  +  ++ + F+ K +    G  S+      ++   +
Sbjct: 63  -------FVVNVLKKEEFAYKKVDDVKLSDAKIFLIKLQRDGRGYSSIHSIRGVLRPAFQ 115

Query: 101 YLKKRKITTESNI---LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
                 +  ++     L    +  S        E +A  L    + +  H  ++ DA   
Sbjct: 116 MAVDDNLILKNPFGFELGTVLVNDSRKRQAVSPEDEAKFL--EFVKNDPHYNQYYDA--- 170

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL-------------- 203
              Y+L+  GLRISE   LT +++   +  + +  +  + R +  +              
Sbjct: 171 --FYILFKTGLRISEFCGLTVKDLDFKEDIINVNHQLQRTREMKYIIVFTKTTSGTRLLP 228

Query: 204 ------PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
                  +  + +          +       LF    G+P+    +++Y++  R      
Sbjct: 229 MEADVKEAFLRILKNRRKPKREPMVDGYGGFLFLDKNGRPMVALHWEKYMQHAREKYNRE 288

Query: 258 -----LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV---NSKNGGD 308
                   T H  RH++ T++ ++G + +++Q ++GH  +S T  +YT+    ++K    
Sbjct: 289 HLLQLPPITPHVCRHTYCTNMANSGMNPKTLQYLMGHSDVSVTLNVYTHTGYDDAKKELA 348

Query: 309 WMMEIYDQ 316
            + E  D+
Sbjct: 349 RLKEARDE 356


>gi|310826662|ref|YP_003959019.1| integrase [Eubacterium limosum KIST612]
 gi|308738396|gb|ADO36056.1| integrase [Eubacterium limosum KIST612]
          Length = 412

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/332 (17%), Positives = 123/332 (37%), Gaps = 45/332 (13%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTL---QSYECDTRQFLIFLAFYTEEKITIQTIR 64
           E  S  L +   +WL+N       SK T     SY     Q+   +  +    I    ++
Sbjct: 91  EEYSAFLREWLTDWLEN-------SKKTEIKKSSY----TQYSSVVYNHLIPTIGDYRLQ 139

Query: 65  QLSYTEIRAFISKR---RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           +++   I+ ++  +     + +   +++R +S + S LK   K  I T +  +++     
Sbjct: 140 EVTSDVIQNYVKAKLSHHQKALSSTTVRRHISILSSALKQAVKLGIITVNPCIDVCIPAA 199

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
                   ++++   L +  L     + K         + L    G+R+ E  +L   +I
Sbjct: 200 KKRKMDVFSKEEYQKL-EKTLYCDQDKVKATA------VLLALKTGVRLGELAALRWCDI 252

Query: 182 MDDQSTLRIQG-----KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL------- 229
             ++ T+ ++         +         + +    YY      +N  I   L       
Sbjct: 253 DFEEKTMMVRDAVHRVNTSEEAGGKKTTMIFEGTKSYYSERNIPMNHEIYTLLKGYEAIL 312

Query: 230 -------FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
                  F   +G  ++P V+Q Y   + +  G+      H LRH+FAT   S    L  
Sbjct: 313 SVKGEFVFLSKKGSFIDPRVYQTYFADVLKNAGIKKR-NFHILRHTFATRAASKNMQLAV 371

Query: 283 IQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           +  +LGH  ++ T + Y +  ++     M ++
Sbjct: 372 LSRLLGHSNITVTLKSYIHPLTEQDRIEMNKL 403


>gi|295397961|ref|ZP_06808017.1| possible integrase [Aerococcus viridans ATCC 11563]
 gi|294973719|gb|EFG49490.1| possible integrase [Aerococcus viridans ATCC 11563]
          Length = 356

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 58/280 (20%), Positives = 111/280 (39%), Gaps = 18/280 (6%)

Query: 41  CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFL 99
            D  ++   L  +  +   +  I  + Y E+     +   Q +  DR++K   + +  F 
Sbjct: 51  HDIERYFDDLINHPSKTYIL--INDIDYDEVSEEQRRALDQFRYKDRTIKSYRNMLNQFF 108

Query: 100 KYLKKRKITTESNILNMRNLKKSN-SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           K+L++  +          N+   +     AL+ +    L+D +   T      I  RN A
Sbjct: 109 KWLERENLYENIVARANNNIPVPHGHAKDALDIEDVEKLLDYLKSTT---DTLIGKRNYA 165

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVP--LLPSVRKAILEYY 214
           ++ L    GLR  E      +++      + + +QGKG + +     +    ++ + +Y 
Sbjct: 166 LILLAVTTGLRTIELSRANFEDVQRRGLNTVIYVQGKGRREKDEFVIIPRKTKEVVRDYT 225

Query: 215 DLCPFD--LNLNIQLPLFRGI----RGKPLNPGVFQRYIRQLRRYLGLPL-STTAHTLRH 267
                   +      PLF       +   ++     R I      +G+     T H+LRH
Sbjct: 226 RFREDQGIMINTDLAPLFASHGNRNKSGRMSARSISRVIANAYEAVGIHSSKITPHSLRH 285

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           + AT  L NGG+LR  Q +L H  + TT+IY    +++  
Sbjct: 286 TAATLSLINGGNLRETQKLLRHSSVRTTEIYAQDLNEDLN 325


>gi|229136651|ref|ZP_04265326.1| Integrase-recombinase [Bacillus cereus BDRD-ST196]
 gi|228646811|gb|EEL02971.1| Integrase-recombinase [Bacillus cereus BDRD-ST196]
          Length = 390

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 67/313 (21%), Positives = 121/313 (38%), Gaps = 34/313 (10%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQTIRQ-------LSYTEIRAF 74
           ++++ ++   + T +SY  +   F   +  + E   I    +++       L    IR +
Sbjct: 75  KDMDEKKNRKEDTRKSYVSEILSFCQCMVEHAEVFDINGDEVQKHASLFKILKPWHIRRY 134

Query: 75  ISKRRTQK-------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--NLKKSNSL 125
            +  +  K           +L +    I+SFLK+L +           ++  N+ + +  
Sbjct: 135 NNWLKEVKNGRNEDTYAIATLAKKTVLIRSFLKHLYQFGYIEAPLQEELQRANVNEQDRP 194

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDD 184
            R L+  + + ++                 N  IL  L   G RI E  +   ++   D 
Sbjct: 195 NRDLSYDEVMKILGFY-------KDRGHLVNYTILLALASTGARIQELCTTRVKDVHYDG 247

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGV 242
           +  L++ GKGDK+R + +   + + I E      F+  LN   + PLF   RG   N   
Sbjct: 248 RYWLKVTGKGDKVRELFVSEHLYQCICEMRRRRGFETVLNQGDENPLFVNQRGNFYNSKT 307

Query: 243 FQRYIRQLRRYLGLPL------STTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTT 295
               +  +     L          TAHT RH+FA   +  G  DL  +   LGH  + TT
Sbjct: 308 LSNQVTAMINKTKLDFLKHRENPVTAHTFRHAFAIMAVEQGHADLYHLMQTLGHEDIQTT 367

Query: 296 QIYTNVNSKNGGD 308
           +IY   + K   +
Sbjct: 368 KIYLEKHMKRKNN 380


>gi|229520176|ref|ZP_04409603.1| integrase [Vibrio cholerae TM 11079-80]
 gi|229342770|gb|EEO07761.1| integrase [Vibrio cholerae TM 11079-80]
          Length = 389

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 98/282 (34%), Gaps = 22/282 (7%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR----TQKIGDRSLKRSL 92
            +Y       +    ++   ++T + + +      R ++           +   +     
Sbjct: 112 SNYSIWVSAGIHLHRYHRHAELTFEQVDKYFLEGFRHYLQHEAMTKSDTGLSRNTACSYF 171

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           + I++ L   ++ +I  ++ +  ++++K   +    L   +   L           TK  
Sbjct: 172 NKIRAALNQAQRDRIIRDNPVEQVKSIKAERTQRTYLTLDEVKAL-----------TKAE 220

Query: 153 DARNSAILYLLYGC--GLRISEALSLTP-QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              +      L+ C  GLR S+   L   +  +      RI     K++           
Sbjct: 221 CRYDVLRRAFLFSCTTGLRWSDIHKLVWGEIELFAHGHYRIIFSQIKLKNSGNGLQYLDL 280

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
                 L   +        +F+G+R    +       + Q     G+    T H  RH+F
Sbjct: 281 PDSAVRLLNLENRGKPTERVFKGLRYDSYS----NVALVQWAIRAGITKHVTFHAGRHTF 336

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           A + L+ G D+ S+  +LGH  L TT+IY ++      + M 
Sbjct: 337 AVNQLARGLDIYSLSRLLGHSELRTTEIYADILETRRTEAMR 378


>gi|153811011|ref|ZP_01963679.1| hypothetical protein RUMOBE_01402 [Ruminococcus obeum ATCC 29174]
 gi|149832899|gb|EDM87982.1| hypothetical protein RUMOBE_01402 [Ruminococcus obeum ATCC 29174]
          Length = 407

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/342 (14%), Positives = 119/342 (34%), Gaps = 56/342 (16%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +   +  ++ +   T  +Y+        +        + I  I ++    ++  
Sbjct: 70  LTLNEFFRLFMSTKKNIRDSTRCNYKS------YWKNAIAPSALGIMKISEIKQIHVKRL 123

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN-LKKSNSLPRALNEKQ 133
            +    +     +++     +   L+      +  ++     R  + K  S  RAL  ++
Sbjct: 124 YADLLEKGYSPGTIRAYHIILSECLQAAVDSDMIRKNPAKGSRKGIDKEVSRKRALTIEE 183

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-- 191
             T+++      S++       +  ++      GLR+ E   L   +I  +++ + ++  
Sbjct: 184 QETMLEFTKNSNSYK------IHYPLIVFALSTGLRVGELGGLLWDDIDLEKNMIHVRRQ 237

Query: 192 ------------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL---- 229
                                   R +PL  + +KA+++  +          + P+    
Sbjct: 238 LVYRNLDGTGCKFHIQPLKTEAGERDIPLTKTAKKALMKQREYDLLLGKRAKEQPVAGLK 297

Query: 230 ---FRGIRGKPLNPGVFQRYIRQLRRYLGLPL---------------STTAHTLRHSFAT 271
              F   +G  L P V    +R + +                       +AH LRH+F T
Sbjct: 298 NFVFLNHQGNQLAPQVLDSALRNIIKAYNKKELKQADKEHGEPFLLPHISAHILRHTFCT 357

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMME 312
               +G D++S+Q I+GH  ++ T   Y +V+     + M +
Sbjct: 358 RAAESGVDVKSLQYIMGHADITMTMERYNHVDEVRVQNEMSK 399


>gi|189499195|ref|YP_001958665.1| integrase family protein [Chlorobium phaeobacteroides BS1]
 gi|189494636|gb|ACE03184.1| integrase family protein [Chlorobium phaeobacteroides BS1]
          Length = 384

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 92/282 (32%), Gaps = 28/282 (9%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK----RRTQKIGDRSLKRSLS 93
           ++    +    F+  +   ++T + I +      + ++      R  + +   S      
Sbjct: 117 NWGSTLKHLTRFVEKHRSVRVTFREIDKAFCEGFKDYLRDEATTRTGKGLSSASQGAYYG 176

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
             K+ L    K  I +      +   K  +     L   +         L    + +  +
Sbjct: 177 KFKACLNKAIKDGILSVDPAKGVARPKIVSHKREYLTFDE---------LQAMAKAECRN 227

Query: 154 ARNSAILYLLYGCGLRISEALSLTP---QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
                +       GLR S+   L     +   D    +  Q K   ++   +    R+ +
Sbjct: 228 PTLKRMFLFSCLTGLRFSDCHKLIWGEVEQYGDGWRIVFHQQKTKGLQYHDISQQARELM 287

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            E           + ++          L+       +R+     G+    T H+ RH+FA
Sbjct: 288 GE-------QGAADDRVFFAISKYSAYLS-----IVLREWVLKAGITKHLTFHSGRHTFA 335

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L NG D+ ++  +LGH  +  T IY ++  K   + M E
Sbjct: 336 VLQLENGTDIYTLSKLLGHREIEVTAIYADILDKKRREAMTE 377


>gi|326388781|ref|ZP_08210368.1| putative integrase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206739|gb|EGD57569.1| putative integrase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 410

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/302 (18%), Positives = 114/302 (37%), Gaps = 20/302 (6%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E + WL++   ERGL+  ++ +   + R FL +      ++     +  L+  ++  ++ 
Sbjct: 117 EYEAWLRD---ERGLASASIAAAMWEARNFLRW----QFDRGGGAGLATLNVRDVDLYM- 168

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS--NSLPRALNEKQA 134
             R   +  +SL      ++S ++YL +          ++          +P  L+ +Q 
Sbjct: 169 DMRGPGLRRKSLADVAERLRSVVRYLHRTGRIPTDLTPHIIGPMLYAYEDVPSTLDTEQI 228

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-K 193
             +    L     +      R+ AIL LL   GLR  E   L  +++   + +L I+  K
Sbjct: 229 AAV----LAAAKTDLSPRGLRDHAILQLLATYGLREGEICRLRLEDVNWREESLHIRHTK 284

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            +    +PLL  V +A+ +Y               +F       +        +R     
Sbjct: 285 TNAHSAMPLLAPVGEALFDYLRHGRPRTEARE---VFVRSCAPYIAMTNLYGMVRGRLSA 341

Query: 254 LGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            G+  P     H  RH+ A  +L      + I  +LGH    +T  Y  + + +     +
Sbjct: 342 AGVEPPGKRGPHVFRHARAVEMLRASVPQKIIGDVLGHRSTESTNTYLKLATDDLRAVAL 401

Query: 312 EI 313
           ++
Sbjct: 402 DV 403


>gi|312193924|ref|YP_004013985.1| integrase family protein [Frankia sp. EuI1c]
 gi|311225260|gb|ADP78115.1| integrase family protein [Frankia sp. EuI1c]
          Length = 397

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 120/323 (37%), Gaps = 43/323 (13%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL  ++   G    TL  Y       ++ +       +    + +LS  ++R   + RR 
Sbjct: 94  WLDEIKGHDGTRPSTLSRYRYAIDGHIVPV-------LGKIRLDKLSPADVRRLHAARRD 146

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +   SL +  + ++  L   ++  + + +   +++  K  +S PR L  + A   ++ 
Sbjct: 147 S-MKPASLAKIHAVLRVALADAERMDLVSRNVAKSVQPPKLGDSDPRDLAVEDARRFLEV 205

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---------- 190
                         R  A+  +    GLR  E L L   ++  D +TLR+          
Sbjct: 206 ----------AAGDRLEALFVVALTMGLRRGELLGLRWDDVDLDAATLRVVRSAQRVSGT 255

Query: 191 -----QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNP 240
                       R VP+     +A+  +      +     +       +F    G  + P
Sbjct: 256 LRLVDTKTRGSRRPVPIPAMTLEALKRHRKRQDQERADAGKAWKENGLVFASTVGTLIEP 315

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYT 299
               R ++QLR  + LP +   H  RH+ A+ LL+ G + R++  ILGH  +  T   Y 
Sbjct: 316 RNVTRRVQQLRGRVNLP-TLRLHDFRHACASFLLAAGIEPRTVMEILGHATMRMTMERYG 374

Query: 300 NVNSKNGG---DWMMEIYDQTHP 319
           +   +      D M ++  Q  P
Sbjct: 375 HALPERLRAASDAMDKLMGQRLP 397


>gi|78060063|ref|YP_366638.1| Phage integrase [Burkholderia sp. 383]
 gi|77964613|gb|ABB05994.1| Phage integrase [Burkholderia sp. 383]
          Length = 578

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 71/340 (20%), Positives = 123/340 (36%), Gaps = 51/340 (15%)

Query: 16  KERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           KE +  +    +ERG  LS LT +    D   +  F+   T  +  +  +R     + R 
Sbjct: 247 KEAERLILWAIVERGRALSSLTTE----DAVAYRAFVRRPTPHERWVGPVRPRGAPDWRP 302

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F     +  +  RS   +LS + +  ++L +++    +    ++   +      AL+   
Sbjct: 303 F-----SGALSARSAAYTLSVLGALFRWLIEQRYLLANPFAGVKV--RDTRGANALDTSH 355

Query: 134 ALTLVDNVLLHTSHE-----------------TKWIDARNSAILYLLYGCGLRISEALSL 176
           A T  + +L+ T  +                 T     R   IL   Y  GLR SE +  
Sbjct: 356 AFTEGEWLLVRTIADGLEFRKSTGTGTPQSGWTPAAAQRLRFILDFGYATGLRASELVGA 415

Query: 177 TPQNIMDDQS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLF 230
           T  +I  D      L++ GKG K   V L P  R  +  +       +         PL 
Sbjct: 416 TLGDIETDAHGDAWLKVIGKGSKAARVALPPLARTGLDRFLVARRLPVTPSRWRPDTPLI 475

Query: 231 RGIRGK---PLNP----GVFQRYIRQLRRYLGLP--------LSTTAHTLRHSFATHLLS 275
             +       +       V QR+  Q    +              + H +RH+ ATH L+
Sbjct: 476 PSLAEDGAAAITSVRLWKVMQRFFAQTADQVDADNPALAQKLRQASPHWMRHTHATHALA 535

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            G +L +++  L H  +STT IY + +       M   + 
Sbjct: 536 RGAELTTVRDNLRHASISTTSIYLHGDDVKRARQMSSAFA 575


>gi|317129457|ref|YP_004095739.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
 gi|315474405|gb|ADU31008.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
          Length = 391

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/322 (15%), Positives = 104/322 (32%), Gaps = 52/322 (16%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR---------R 79
           + L   TL++Y+     +LI            + + +     I  ++            +
Sbjct: 80  KHLGAKTLETYKSIINNYLI-------PTFGNKKLDEFKPINIINYLDCLGEDNARKDGK 132

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +   S+K     +++     K+  I   + + +++  K +        + + + L++
Sbjct: 133 EGGLSSSSIKYHYRVLRNIFSRAKEWIIIKNNPVESVKPPKVTQEKTSVYTKDEVIELLE 192

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK------ 193
            +     H+          ++      GLR  E L L   +I  D  T+ I         
Sbjct: 193 LLKNEPIHQ--------KLMVTAALMAGLRRGEILGLQWDDIDLDAGTISINHSLQYTKE 244

Query: 194 ----------GDKIRIVPLLPSVRKAILEY-------YDLCPFDLNLNIQLPLFRGIRGK 236
                        IR V +   + +   +Y                      +F    GK
Sbjct: 245 KGYVLGPPKNNSSIRKVSIPMYLVEEFKKYKRTKSKERIQAAELWEGGKYFYVFSSWNGK 304

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           P  P     + R+  +  G       H LRH+ AT L++ G   ++I + LGH  + TT 
Sbjct: 305 PFYPTAVGTWWRRFLKRKGF-KYIRFHDLRHTAATLLINEGEHAKTISARLGHADIKTTM 363

Query: 297 ----IYTNVNSKNGGDWMMEIY 314
                Y     +   + +  I+
Sbjct: 364 NIYGHYLREADEKAANKLNSIF 385


>gi|85859956|ref|YP_462158.1| phage integrase family protein [Syntrophus aciditrophicus SB]
 gi|85723047|gb|ABC77990.1| phage integrase family protein [Syntrophus aciditrophicus SB]
          Length = 364

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/288 (19%), Positives = 109/288 (37%), Gaps = 24/288 (8%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
            SY+ D +  +  L  Y  EK     + +L+   I  +  KRR+  +  R++   L  + 
Sbjct: 79  SSYKRD-KSIVTQLKSYFGEKY----LTELTPAMISDYKVKRRSDGVSSRTINYELITMS 133

Query: 97  SFLKYLKKR-KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
                  +   +  E+ +  ++  + +N + R L  ++   L+           K     
Sbjct: 134 HAFNLAIREWGLANENPVSKVKKDRVTNKIERWLTSEEETNLL-----------KESPKW 182

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY 214
              I+      GLR SE L L    +   + T+ I   K   I  +PL  +    +    
Sbjct: 183 LQDIIIFAIHTGLRQSEILDLKWSQVDMKRRTVTIHEQKNRCIDTLPLNETAMTVLKN-- 240

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                +  L ++  +F    G      +  +      +   +  +   H LRH+FAT L+
Sbjct: 241 ---RHNPELPLEGYVFPNTLGDRKGNRLLLKAFYVALKKANIS-NFRFHDLRHTFATRLI 296

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
             G DL ++Q +     ++  Q Y + ++++    +  + D   P IT
Sbjct: 297 RKGADLYTVQKLGRWKTVTMVQRYAHHHTESLRAAIEMMDDVEKPIIT 344


>gi|154502513|ref|ZP_02039573.1| hypothetical protein RUMGNA_00326 [Ruminococcus gnavus ATCC 29149]
 gi|153796909|gb|EDN79329.1| hypothetical protein RUMGNA_00326 [Ruminococcus gnavus ATCC 29149]
          Length = 420

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 58/365 (15%), Positives = 136/365 (37%), Gaps = 61/365 (16%)

Query: 2   EGNNLPEIVSFEL-LKERQNWLQNLE--------------IERGLS------KLTLQSYE 40
           E + +PE    +L L+E++  +Q+L+              +ER LS        TL +Y+
Sbjct: 46  EADKMPEGKRADLSLREKERKVQSLQMQGITGSNITVLELVERYLSLKTGVKHNTLANYK 105

Query: 41  CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLK 100
                    +    +E+   + +  +  ++ + F+ K +    G  S+      ++   +
Sbjct: 106 -------FVVNVLKKEEFAYKKVDDVKLSDAKIFLIKLQRDGRGYSSIHSIRGVLRPAFQ 158

Query: 101 YLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
                 +  ++        +    L     ++QA++  D        +      +     
Sbjct: 159 MAVDDDLILKNPF----GFELGTVLVNDSQKRQAVSPEDETKFLDFVKNDPHYNQYYDAF 214

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL----------------- 203
           Y+L+  GLRISE   LT +++   +  + +  +  + R +  +                 
Sbjct: 215 YILFKTGLRISEFCGLTVKDLDFKEDIINVNHQLQRTREMKYIIVSTKTTSGTRLLPMEA 274

Query: 204 ---PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP--- 257
               +  + +          +       LF    G+P+    +++Y++  R         
Sbjct: 275 DVKEAFLRILKNRRKPKREPMVDGYGGFLFLDKNGRPMVALHWEKYMQHAREKYNRENLL 334

Query: 258 --LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV---NSKNGGDWMM 311
                T H  RH++ T++ ++G + +++Q ++GH  +S T  IYT+    ++K     + 
Sbjct: 335 QLPPVTPHICRHTYCTNMANSGMNPKTLQYLMGHSDVSVTLNIYTHTGYDDAKKELARLK 394

Query: 312 EIYDQ 316
           E  D+
Sbjct: 395 EARDE 399


>gi|238764951|ref|ZP_04625889.1| Integrase [Yersinia kristensenii ATCC 33638]
 gi|238696810|gb|EEP89589.1| Integrase [Yersinia kristensenii ATCC 33638]
          Length = 330

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/256 (20%), Positives = 101/256 (39%), Gaps = 32/256 (12%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNIL 114
            ++      Q++   +  + S +    +   S+ R L  + +    L        E+ + 
Sbjct: 91  REMGDPRASQMTRKFMLEYRSDKLQAGLMPSSINRDLCALSAMFTVLIDAEVFHNENPVH 150

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            +R LK  N+    L++ +   L++            ++     +  L    G R +EA 
Sbjct: 151 GIRKLKVRNTEMAFLSDDEIERLLE-----------RLEGDARRVAILCLSTGARWNEAA 199

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
            L  ++I+ ++ T     K  K R VP+  SV   I  +                 R  +
Sbjct: 200 GLRGEHIVGNRVTF-FNTKNGKSRSVPVANSVLSLIKTH-----------------RTGQ 241

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              ++   F+  +R++     LP     H +RH+FATH + NGG++ ++Q ILGH  +  
Sbjct: 242 LYRVDYLQFREILREV--KPDLPKGQATHVMRHTFATHFMMNGGNIVTLQRILGHATIQQ 299

Query: 295 TQIYTNVNSKNGGDWM 310
           T  Y + +     D +
Sbjct: 300 TMTYAHFSPDFLQDAV 315


>gi|298529892|ref|ZP_07017294.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509266|gb|EFI33170.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 386

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/283 (17%), Positives = 106/283 (37%), Gaps = 21/283 (7%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           ++SY+   +  +I L  +   K     + Q+    I +   +         +  R +  +
Sbjct: 114 IKSYKKSWKTDVILLRNHLIPKFGGMHMDQIKRDHIISLHQQCLLADYKPATANRLVVLL 173

Query: 96  KSFLKY--LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
           +                +    +   +++N   R L++ +   L   +    +   +   
Sbjct: 174 RYIFNLALKWDTAGVRTNPTKEVTLAEENNQRDRYLDKNELDRLCKALKESENPLLEP-- 231

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAI 210
                I+ +L   G R SE L     N   ++ T +I G   K  K R +PL  S  + +
Sbjct: 232 -----IILMLLLTGARKSEVLKAKWHNFDFERRTWQIPGTDTKTGKTRTIPLSDSALEVL 286

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            +          ++    +F     +     +F R     R+  GL      H LRHSF+
Sbjct: 287 DKIKY-------VDGCPYVFPNPDTQKPFTAIF-RSWDTARKKAGLG-EVRIHDLRHSFS 337

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           + L+++G  +  +  +LGH ++ TT  Y ++ ++   D +  +
Sbjct: 338 SFLINSGRSIYEVSELLGHTQIKTTMRYAHLANQTLLDAVNSV 380


>gi|20091071|ref|NP_617146.1| site-specific recombinase [Methanosarcina acetivorans C2A]
 gi|19916166|gb|AAM05626.1| site-specific recombinase [Methanosarcina acetivorans C2A]
          Length = 314

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/307 (18%), Positives = 111/307 (36%), Gaps = 34/307 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           RG SK T++ Y    + FL                    +TE+  F+   R ++     +
Sbjct: 32  RGYSKRTIEGYVSHAKFFLQMCGVNAG------------FTELEGFLVHIRDERQYTLAT 79

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
                + + +F  +L+ + I   +NI   R  K+     +  +  +   L+    +    
Sbjct: 80  CNNYFASLSTFFDFLEFKHIIERNNIPTFR--KRYLRSYKKYHTPETRQLITIEDMAKLV 137

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK-GDKIRIVPLLPSV 206
           +         A++  L   G+R +E ++L   +I  ++ T+R++       RIV      
Sbjct: 138 KV-PGYPMYQALIIFLAKTGIRRNELITLDRADIDLEKCTVRLKKTAKRSNRIVFFDSET 196

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLG-------LPL 258
           +  + EY +        + +  LF G +    +   +    +      +G       L  
Sbjct: 197 KVFMEEYLNKRH-----DKEKALFIGKQNGHRIQRNLVYNVVTSAASSIGLHNPDGRLEE 251

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             T H  RH F T L  +G +   IQ + G  R     +Y ++      D + E Y +  
Sbjct: 252 HFTPHCCRHWFTTWLRRSGMERTFIQELRGDSRGEAIDVYDHI----EKDELREAYLKCI 307

Query: 319 PSITQKD 325
           P +  K 
Sbjct: 308 PQLGIKP 314


>gi|32471153|ref|NP_864146.1| integrase [Rhodopirellula baltica SH 1]
 gi|32396855|emb|CAD71823.1| integrase [Rhodopirellula baltica SH 1]
          Length = 227

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 63/235 (26%), Positives = 102/235 (43%), Gaps = 19/235 (8%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           +  +LS  ++R ++   R Q++   S++  +  +K F +    R        L    L K
Sbjct: 8   SPEKLSEAQVRQYVL-LRRQQLQLGSMRPIVGALKFFFRVTVPRDW----PTLQAVRLPK 62

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           SN+LP+ L  ++   L+D  +                I   +Y CGLR  +   L PQ++
Sbjct: 63  SNTLPKVLVPERCWQLIDATVAS----------HLQVIFRAMYSCGLRGVDVRHLRPQDV 112

Query: 182 MDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPL 238
             D+  LR+   KG + R VPL  +   A   ++     P  L    Q         +P+
Sbjct: 113 DADRMMLRVCTTKGHRQREVPLPQATLDAFRAHWATHRNPNWLFPATQRNTPASKADQPI 172

Query: 239 NPGVFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +    QR   ++   LG      T HTLRHS+AT +L  G +L+ +Q  LGH  L
Sbjct: 173 SARTIQRGFTKVTESLGWQDSGLTPHTLRHSYATAMLDAGVNLKVLQGYLGHKNL 227


>gi|330970082|gb|EGH70148.1| Phage integrase [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 321

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 104/245 (42%), Gaps = 11/245 (4%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
               L    + A ++  R       +    ++ I+  +    +  + +   +L +R++K 
Sbjct: 63  PWHTLQPGHVTALVATLRQDDYAPNTTSLYVNAIRGVMNEAWRHDLISHDQLLKIRSIKP 122

Query: 122 --SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
                L +  N +   TL+  ++   + + +    R++AI+ +LYG G+R SE+++L   
Sbjct: 123 VSGTRLIKGRNIR--RTLIRELMEACAADPRPQGRRDAAIIAILYGSGMRKSESVNLDLS 180

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---RGIRGK 236
            I   + +LR+ GKG+K  I        KA+ ++ +L    L        F   R  RG 
Sbjct: 181 QIDFAERSLRVLGKGNKQLIKYAPEWAFKALNDWLELRRSCLQPGQGDDPFLFNRIRRGS 240

Query: 237 PLNP-GVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            +    + +  I  + +  G  + ++   H  R SF T ++    DL   Q +  H  +S
Sbjct: 241 HITRDRITKHAIYFIAKQRGRQVGVNIMPHDFRRSFITRVIEE-FDLSIAQKLAHHTHIS 299

Query: 294 TTQIY 298
           TT  Y
Sbjct: 300 TTASY 304


>gi|300776492|ref|ZP_07086350.1| mobilizable transposon [Chryseobacterium gleum ATCC 35910]
 gi|300502002|gb|EFK33142.1| mobilizable transposon [Chryseobacterium gleum ATCC 35910]
          Length = 429

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/306 (16%), Positives = 114/306 (37%), Gaps = 28/306 (9%)

Query: 8   EIVSFEL-LKERQNWLQN---LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           + +  EL  K+++ ++     L  +R  S  +  S   + R  + F+  ++ + +    I
Sbjct: 117 DAIKAELQEKQKEKFIDYCNRLLKKRHGSNNSSDSIRTNWRCLIEFIIEFSGDDLRFSKI 176

Query: 64  RQLSYTEIRAFISKRRTQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
                 + + ++     +      + + S     S  K+ +                ++ 
Sbjct: 177 DLSFADDFKLYLLSAPYRGKKKGILSNNSAATYFSIFKAIVSQAFIDGYFIIDLSAKIKG 236

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           + +  S    L+ ++   LV+    +   +   +              GLR  +   L  
Sbjct: 237 IGEQESFREHLSLEELNLLVNTPCENDELKRASL---------FSALTGLRHCDIKRLKW 287

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           + I    + ++IQ +  K + V   P   +AI               +  +F  ++    
Sbjct: 288 KEIDVQSNRIKIQFRQKKTKGVEYTPISEQAIHLCGTPRL------PEQLVFENLQ---- 337

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +     R + +  +  G+    T H  RH+FAT  LS G D+ ++  +LGH +++TTQ+Y
Sbjct: 338 DSSWISRPLEKWVKSAGITKHITFHCFRHTFATLQLSLGTDIYTVSKMLGHSKVTTTQVY 397

Query: 299 TNVNSK 304
             V  +
Sbjct: 398 AKVVDE 403


>gi|154494486|ref|ZP_02033806.1| hypothetical protein PARMER_03843 [Parabacteroides merdae ATCC
           43184]
 gi|154085930|gb|EDN84975.1| hypothetical protein PARMER_03843 [Parabacteroides merdae ATCC
           43184]
          Length = 411

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/297 (17%), Positives = 113/297 (38%), Gaps = 28/297 (9%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLK 89
            S +T+  Y+   ++  + +  Y  ++    T  +L+   IRAF    +T+  +   ++ 
Sbjct: 129 YSPVTINRYKNVVKKLQLLIPSYYGKE--DVTFHELTPEFIRAFDIYLKTEAGLCRNTIV 186

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R +   K F      ++   ++     + +++  + P  L   +  T++         E 
Sbjct: 187 RYMKCFKKFTNMALAKEWMRKNPFYGYK-MEQDETDPVFLTYDELQTVMKKKFTIPRLEL 245

Query: 150 KWIDARNSAILYLLYGCGLRISEALSL--------TPQNIMDDQSTLRIQGKGDKIRIVP 201
                    +       GL  S+  +L           +    +  ++++ +     I  
Sbjct: 246 V------RDVFVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRVKLEHRRKASSISN 299

Query: 202 LLP-SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           +    V  AILE Y   P  +     LP+    +           Y++++  + G+  + 
Sbjct: 300 IPLLPVPLAILEKYREHPVCIKKGCCLPVMCNQKM--------NSYLKEIADFCGIKKNL 351

Query: 261 TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           T H  RH+F T + L+N   L+ +  +LGH     TQ Y  V + +  + M  + ++
Sbjct: 352 TTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNNVKER 408


>gi|153871856|ref|ZP_02000919.1| Type 1 fimbriae Regulatory protein fimB [Beggiatoa sp. PS]
 gi|152071680|gb|EDN69083.1| Type 1 fimbriae Regulatory protein fimB [Beggiatoa sp. PS]
          Length = 178

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 10/186 (5%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L E +   L++      + ++K    RN  ++ L+Y   LR+SEA+++T   I     
Sbjct: 3   KHLLESEVDLLLE-----ATRKSKHYPQRNYCLVLLIYRHALRLSEAINMTWSQIDFANE 57

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           T+ ++     +     L  V     E   L     + N    LF   R KPL     Q  
Sbjct: 58  TIYVERIKGSVSGTHPLRPV-----EIMALKLLKQDTNGSKHLFISQRNKPLGKRSVQHL 112

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           I    +  G+      H LRH+    L   G D R IQ+ LGH  +  T IYT ++SK  
Sbjct: 113 IALFGQEAGIEFPVHPHMLRHACGYRLAKEGRDTRVIQAYLGHKDIRNTVIYTELSSKRF 172

Query: 307 GDWMME 312
            D+ +E
Sbjct: 173 DDFFLE 178


>gi|332829744|gb|EGK02390.1| hypothetical protein HMPREF9455_01660 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 453

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/293 (19%), Positives = 111/293 (37%), Gaps = 29/293 (9%)

Query: 33  KLTLQSYECDT---RQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
             T  SYE      ++  +FL   Y    I I+ I  L   +  A++     +K+   +L
Sbjct: 127 DRTEGSYEQLLINRKRVEMFLRDRYNLSDIPIKEIEPLFIEDYYAYL--LEERKLAGSTL 184

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
             +++ +K  +   +++     +     R  K        L E +    +   L      
Sbjct: 185 LTAVTKLKQVMLIAQRKGYIHVNPFAGFR-FKAKTRDRGYLTEDELKRFMAVEL------ 237

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKGDKIRIVPLLP 204
            ++   +   I       GL  ++   LT  +       +   +  + K +    V LLP
Sbjct: 238 RRYKQRQIRDIFVFQAFTGLAYADVKKLTFDDIQTSFDGELWLIAKRKKTNATFYVKLLP 297

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             ++ I +Y  +       N   P+       P +     R ++++ +  G+    T+H 
Sbjct: 298 IAKQLIEQYRLVA----KNNFVFPV-------PSHSDNMNRCLQRIAKLCGVNKRVTSHM 346

Query: 265 LRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            RH+ AT   LS G  + ++  +LGH  ++TTQIY  + +      M  + D+
Sbjct: 347 GRHTMATTVCLSQGVPIETVSQMLGHSCITTTQIYAKITNDKISKDMAVLTDK 399


>gi|260467249|ref|ZP_05813424.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
 gi|259028939|gb|EEW30240.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
          Length = 160

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 2/135 (1%)

Query: 171 SEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
           SE   L   +I   +  +R+ QGKG K R   L P + + +  ++        +     L
Sbjct: 2   SEVAHLKVDDIDSTRMLIRVEQGKGRKDRNAMLSPQLLELLRLWWREGRRRGVMLPHGWL 61

Query: 230 FRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           F G     P++     R +++     G+    + HTLRHSFATHLL    D+R IQ +LG
Sbjct: 62  FPGRSCTDPISSRQLHRAVQEAAEVAGIRKRVSPHTLRHSFATHLLEQDVDIRVIQVLLG 121

Query: 289 HFRLSTTQIYTNVNS 303
           H +L TT +YT V++
Sbjct: 122 HSKLETTALYTKVST 136


>gi|94986617|ref|YP_594550.1| prophage DLP12 integrase [Lawsonia intracellularis PHE/MN1-00]
 gi|94730866|emb|CAJ54229.1| prophage DLP12 integrase [Lawsonia intracellularis PHE/MN1-00]
          Length = 388

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/287 (18%), Positives = 106/287 (36%), Gaps = 23/287 (8%)

Query: 47  LIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK 106
           L     + +     +   +++  ++R F           +++  +L+ ++  L++ +K  
Sbjct: 119 LCRYELHLKNIFGHKFPEEITTNDVRIFKDNLIQSGKSPQTVLNTLALLRRILRFGEKNG 178

Query: 107 ITTESNILNM--RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLY 164
             T  +   +     K  N     L E Q   L++ +   T              L L  
Sbjct: 179 FCTLPDRSQLVFEMPKVDNIKTENLTETQLKALMEALDAETDQVMASC-------LRLAL 231

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGK--GDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
             G+R    L+L   ++  +Q  + +QGK           +    K ILE          
Sbjct: 232 VTGMRKGALLALEWTDLDFEQGIITLQGKSAKKGKTAYIPMSEAAKIILEKLP------- 284

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-HTLRHSFATHLLSNG-GDL 280
            +    +F   +G+      F+    ++++   LP      H LRH++A+HL S+G  DL
Sbjct: 285 -HTSRYVFPNTKGEK--RSDFRSMPNRIKQKAQLPADFRPFHGLRHTYASHLASSGKVDL 341

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
            ++Q +L H     TQ Y ++  +          D    ++ +KD  
Sbjct: 342 YTLQKLLTHSSPQMTQRYAHLADEAMKRAARVADDILTSNMEKKDDD 388


>gi|309777226|ref|ZP_07672189.1| site-specific recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915096|gb|EFP60873.1| site-specific recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 350

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 58/322 (18%), Positives = 117/322 (36%), Gaps = 47/322 (14%)

Query: 34  LTLQSYECDT-RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR----------RTQK 82
            T  +Y     +  L  L  Y         + +L+   I+ +I  +            + 
Sbjct: 44  NTFNNYNSYIFKHILPVLGEYR--------LTELTTPVIKKYIMDKLTHGRIRITGEEKG 95

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +  +++K   + +K  L    +      +   ++   K+          +      +   
Sbjct: 96  LSTKTVKEHYTLLKKALDKAVEEGEMYYNPCHSISFPKQIKP-------EVHALEQEEQE 148

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI------------ 190
              SH     +  +     +    GLR  E  +L  ++I  + S + +            
Sbjct: 149 KLESHIHARFEPNSKLTAKIALYAGLRNGEVCALQIKDIDFENSMISVSKTLYRTKTASG 208

Query: 191 -------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
                  + K  + R VP+   +   +  Y    P ++  N +  +F   RGKPL P   
Sbjct: 209 KTEIMVSKTKNKRQRFVPITKGLMDDLKTYIATMPEEMRNNPEQYVFINQRGKPLEPKRL 268

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN 302
             + ++L +  GL      H LRH+FAT  L  G D++ +  +LGH  +  T  +YT+V 
Sbjct: 269 LCHFKELLKEAGLQ-DIKFHNLRHTFATRCLECGIDMKIVSKVLGHSTIQITADLYTHVT 327

Query: 303 SKNGGDWMMEIYDQTHPSITQK 324
           ++   + M ++  +   +  QK
Sbjct: 328 NRAMQNAMSKLIKENWNNAYQK 349


>gi|294776786|ref|ZP_06742249.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294449262|gb|EFG17799.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 404

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/290 (21%), Positives = 109/290 (37%), Gaps = 23/290 (7%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD--RSLKR 90
           + T+  YE   R    FL    E K +    R +    +  F    +T+K      ++K 
Sbjct: 131 EATVLRYERTVRYLEEFLK--KEYKSSDIPFRNIDRQFVEKFEYFIKTEKNCAQNATVK- 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L  +K  +      K  TE+    ++  K++ +    L E +   +++        E  
Sbjct: 188 YLKILKKIVTLALTNKWMTENPFTGIK-FKQTQTNRDFLTEDELHAIMEKKFDIPRLEAV 246

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRIVPLLP--SVR 207
                   I       GL  ++   L P++I  D      I+   +K   +  +P   + 
Sbjct: 247 ------RDIFVFCCLSGLAFTDVQHLKPEHITKDINGEWWIRKAREKTNNMCHIPLLDIP 300

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             I+E Y   P  L  N+ LP+    R           Y++++    G+    T H  RH
Sbjct: 301 AMIIEKYRKNPVCLQKNVVLPVPSNQRM--------NSYLKEIADVCGITKKLTTHCARH 352

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           SFA   L+N   + +I  +LGH  + TT+IY  V        M  + ++ 
Sbjct: 353 SFACFALANKVSMETIAKMLGHSDIRTTKIYAKVLDTTVSKEMETMKNKF 402


>gi|29350025|ref|NP_813528.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341937|gb|AAO79722.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 420

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 99/260 (38%), Gaps = 19/260 (7%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           + I+++ +  +    +RA +   +   I   +     S +K+ LK     +  T      
Sbjct: 173 KAISVKLLEDIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEYLTVDISAK 232

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           ++ +        AL   +   LVD         T   D             GLR S+  +
Sbjct: 233 VKGITNIEKPRVALTMNEVQMLVD---------TPCKDDVLKRAFLFSILTGLRHSDIQT 283

Query: 176 LTPQN-IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           L  +      + T +      K +     P +++A+         D  L     +F G+ 
Sbjct: 284 LKWKQIQQTSKGTWQAVVIQQKTKRPDYKPVIQQALQLCGIRPDDDEAL-----VFEGLT 338

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
               +     R ++      G+    T H  RHS+A+ LL NG D+ +I+S++GH  + T
Sbjct: 339 ----DASWISRPLKVWIEASGIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKT 394

Query: 295 TQIYTNVNSKNGGDWMMEIY 314
           TQIYT++ ++        ++
Sbjct: 395 TQIYTHIVNEQKEKAANTLH 414


>gi|296185025|ref|ZP_06853435.1| site-specific recombinase, phage integrase family [Clostridium
           carboxidivorans P7]
 gi|296049859|gb|EFG89283.1| site-specific recombinase, phage integrase family [Clostridium
           carboxidivorans P7]
          Length = 199

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 8/189 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           +   + +A  L + +             R+ AI  + Y CGLR SE   +  ++    + 
Sbjct: 10  KYFTQNEAAKLFNAIESFQ----GIHSIRDLAIFRVAYRCGLRASEIALIKLEDYNASKG 65

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            L  +           L    K++L+ Y      L+     PLF   + KP++       
Sbjct: 66  ELYCKRLKGSSNNTIRLDIKTKSVLDKYIAKYRILS--ESSPLFVSQQNKPISRQTLDYL 123

Query: 247 IRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           I++      +   T    H+L+H+ A HL  +G D++ +Q  LGH  +S T+IY    +K
Sbjct: 124 IKKYCSLANISDKTKYHFHSLKHTTAVHLAESGMDIKELQWWLGHKSVSNTEIYFQFTTK 183

Query: 305 NGGDWMMEI 313
                  ++
Sbjct: 184 QQEKMYAKL 192


>gi|303253788|ref|ZP_07339923.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307248455|ref|ZP_07530475.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307250673|ref|ZP_07532610.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307262546|ref|ZP_07544186.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|302647372|gb|EFL77593.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306855023|gb|EFM87206.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306857281|gb|EFM89400.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306867758|gb|EFM99594.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 267

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/303 (17%), Positives = 115/303 (37%), Gaps = 38/303 (12%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++   Q +L N    + L+K ++ +Y    +QF                + + +  E + 
Sbjct: 1   MIISFQKYLSN----KDLAKNSISAYLFAVKQFYKLY----------PNVTRGNLKEYKV 46

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+  R       +++   L  I  +L+++KK K       L+   +++   L   ++E  
Sbjct: 47  FLIDR----YKPQTVNLRLRAINCYLEFIKKEKWK-----LSFVKVQQKPFLENVISEAD 97

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                    L   +E  W       ++  +   G R+SE + +  ++I      L +  K
Sbjct: 98  YYYF--KQKLKEDNELYW-----YFVIRFMAATGSRVSELIQIKVEHINI--GYLDLYSK 148

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K+R + +  ++++    +           I   +F    G+ +        ++ L + 
Sbjct: 149 GGKLRRIYIPQALQQECQIWLKQTN-----KISGFIFLNKYGERITTRGIAGQLKILAKR 203

Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             L P     H+ RH FA   L    D+  +  ++GH  + TT+IY    +      + +
Sbjct: 204 YKLDPKVVYPHSFRHRFAKSFLERFNDIAFLADLMGHESIETTRIYLRKTATEQQAIINK 263

Query: 313 IYD 315
           I D
Sbjct: 264 IID 266


>gi|172041119|ref|YP_001800833.1| putative phage integrase [Corynebacterium urealyticum DSM 7109]
 gi|171852423|emb|CAQ05399.1| putative phage integrase [Corynebacterium urealyticum DSM 7109]
          Length = 265

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 88/224 (39%), Gaps = 30/224 (13%)

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q     + +   S ++ F  + +K  +  E+   ++   +   SLPR   +   L  + 
Sbjct: 56  QQNWKPETRRGYRSSLRQFFAWREKAGL-GENIARDLPRARLHRSLPRPARDVDILLALR 114

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                T             ++ L+   GLR  E   L   +++ D  TLR+ GKG   R 
Sbjct: 115 KAPART-----------QLMIELMAYGGLRRGEVCKLRTCDLVGD--TLRVVGKGGHERF 161

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPL P +   I                  LF G     L+     + I +      LP  
Sbjct: 162 VPLPPHLSGQIRGM-----------TAGYLFPGRIDGHLSAAYVGKLIGRA-----LPAG 205

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            T H LRH FAT     G D+ ++QS+LGH +L TT IY  ++ 
Sbjct: 206 VTPHQLRHRFATVAYRKGRDIVAVQSLLGHAKLDTTMIYVALDD 249


>gi|294507519|ref|YP_003571577.1| Tyrosine recombinase xerD [Salinibacter ruber M8]
 gi|294343847|emb|CBH24625.1| Tyrosine recombinase xerD [Salinibacter ruber M8]
          Length = 302

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 105/276 (38%), Gaps = 23/276 (8%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +K   ++L++L      S  T ++Y  D + F     F   E IT   ++ +++ +IRAF
Sbjct: 1   MKLLDSFLRSLS-----SSQTRRAYRTDLQAF-----FSQAEGITADLVQAITHEDIRAF 50

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +       +   + +R L+ ++SF  +    +I   +   +  ++K       + + +  
Sbjct: 51  VETMHDLDLAAGTQRRRLAALRSFFDWAMTERIHDRNPARH-PDVKPMPPADASSSVRSL 109

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQG 192
             L     L  +  +     R+ AI+       LR SE  ++  ++   +     L +  
Sbjct: 110 TKLEVRDTLEAAGASDETGLRDQAIILTTIHAALRRSEIAAVAVEDVRPLGRYWILEVNP 169

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI----RGKPLNPGVFQRYIR 248
           +G     V +   V   I         D       PL+R +    RG+PL+       +R
Sbjct: 170 EGTGEEYVRIPDQVVSVI-----DNVKDQFGLTAGPLWRSMSNRNRGEPLSADAIYTIVR 224

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
           +     G+  S T  TLR +        G  L  IQ
Sbjct: 225 RAGTAAGVG-SITIDTLRRTGLRLAADGGASLSQIQ 259


>gi|317502577|ref|ZP_07960699.1| integrase [Prevotella salivae DSM 15606]
 gi|315666304|gb|EFV05849.1| integrase [Prevotella salivae DSM 15606]
          Length = 410

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 65/286 (22%), Positives = 106/286 (37%), Gaps = 24/286 (8%)

Query: 32  SKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           SK +LQ Y    R F  FL   Y  + I +         +   ++S          +  +
Sbjct: 129 SKDSLQKYSVLRRHFSEFLIHKYGRKDIGLTEFTPSVVQDFELYLST--VAGCAYNTSVK 186

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +  +K+   Y +KR        LN R   +  +    L +++ + + +  L     E  
Sbjct: 187 KMKALKTVTIYAQKRGYLLHDPFLNHRFHLEPVNR-GFLTDEEIMKIANKELAIQRLEL- 244

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVR 207
               R+  I       GL   +  +L P NI    D Q  +  + K      V LL   R
Sbjct: 245 ---VRDVFIFSCF--TGLAYIDVSNLRPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPR 299

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             I +Y      D           G     L       Y++++    G+  + T H  RH
Sbjct: 300 SIIAKYSHKTYRD-----------GKLFPILTNQKTNAYLKEIADLCGVKKNLTFHLARH 348

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +FAT  LS G  + S+  +LGH  + TTQIY  + +K     M ++
Sbjct: 349 TFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQL 394


>gi|315608577|ref|ZP_07883561.1| integrase [Prevotella buccae ATCC 33574]
 gi|315249748|gb|EFU29753.1| integrase [Prevotella buccae ATCC 33574]
          Length = 318

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/287 (20%), Positives = 114/287 (39%), Gaps = 25/287 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K T  +Y    R    F+   +  + +    + +    + ++FI     + +   + + 
Sbjct: 39  AKGTYPAYIYTRRTLAEFIEKEFRTKDVAFGQMTEQFIHDYQSFI--LDEKGLAIDTCRH 96

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L+ +K   +   K          +    +     P+ L+ +    + D  L+   H   
Sbjct: 97  YLAIVKKVCRKAYKEGHADRCFFAHFSLPQPKEKTPKTLSRESFEKIRD--LVIPEHRAS 154

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGDKIR-IVPLLPSV 206
            I AR+  +       G   ++A+S+T  N+  D +    L+ + K +++R  V LLP  
Sbjct: 155 HILARD--LFLFACYTGTAYADAVSVTRDNLFTDDNGGLWLKYRRKKNELRACVKLLPEA 212

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              I +Y D        + +  LF  +    +     +R ++ L     +    T H  R
Sbjct: 213 LALIEKYRD--------DDRQTLFPMLHYPNM-----RRLMKCLAVLADIKEDLTYHAGR 259

Query: 267 HSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           HSFA+ + L  G  + +I  +LGH  L TTQ+Y  V  K   + M +
Sbjct: 260 HSFASLITLEAGVPIETICKMLGHSNLQTTQVYAKVTPKKLFEDMDK 306


>gi|254520505|ref|ZP_05132561.1| phage integrase [Clostridium sp. 7_2_43FAA]
 gi|226914254|gb|EEH99455.1| phage integrase [Clostridium sp. 7_2_43FAA]
          Length = 390

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/314 (18%), Positives = 114/314 (36%), Gaps = 43/314 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           L   T++ Y    R ++          I    ++ L+   I+ + +          ++K 
Sbjct: 89  LKASTIERYNVFYRNYIKGC------NIGQVKLKDLTAPIIQNYYNSLIKNGKTPYTVKM 142

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
               +KS L Y K+      +   N+   K        +N+      V  +         
Sbjct: 143 LHKALKSSLSYAKRINYIGINCCDNVIPPK-------VINKDDDKFKVFTLEEQKKFMNV 195

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG------------------ 192
             D +   +  L  G G+RI E ++L   +I  D+ TL++                    
Sbjct: 196 IKDHKYRLMFILALGTGIRIGELVALKWDDINFDECTLKVNKSISRSYIEIEGKRKFLLE 255

Query: 193 -----KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGV 242
                    IR V +  ++ K ++ +        +   ++      +F    G+ + P  
Sbjct: 256 ETTPKTRSSIREVGIPSNILKELINHRKEQDEYKDNYKEIYTDNNYVFTDALGRYILPDT 315

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
             +   ++ +   +P  T  H+LRH++AT L   G  L+++Q +LGH  +  T  IYT+V
Sbjct: 316 LSKAYLKVLKDNNIP-HTRFHSLRHTYATRLFEKGVPLKTVQKLLGHSSIKITADIYTHV 374

Query: 302 NSKNGGDWMMEIYD 315
                   + ++ D
Sbjct: 375 IGNEKISAVEKLND 388


>gi|312792896|ref|YP_004025819.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180036|gb|ADQ40206.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 392

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/333 (18%), Positives = 124/333 (37%), Gaps = 57/333 (17%)

Query: 18  RQNWLQ---NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
            +NWL    +   +  +S+ T   YE         +  +    +    ++ L    ++  
Sbjct: 70  LENWLNIWLHQYKKNQISESTFDDYES-------IIKNHINPVLGKYKLKDLRPEHLQML 122

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ- 133
            +++    +  + +K     + S L    K  +        +RN+ ++ +LP+  +EK+ 
Sbjct: 123 YNEKHKAGLSTKRIKHIHVILHSALNQAIKNGLI-------VRNVSEATTLPKNTSEKEM 175

Query: 134 -ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ- 191
             LT+ +        E + +         L    G+R+ E L+L  +++  +   + I+ 
Sbjct: 176 KVLTVEEQKRFLQVLEGERLKPA----FVLALTTGMRLGEILALKWKDVDLENKKITIRN 231

Query: 192 -------------------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
                                       +  RI+PL     + ++ +  L   +      
Sbjct: 232 SVRRIKNRNEQSEIKTKTVLVLKEPKTENSGRIIPLPDVAYQELVNFKLLQEEEKRQAGS 291

Query: 227 LPL-----FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
             +     F    G P+ P  F R   ++    GL  +   H LRH+FAT LL    + +
Sbjct: 292 SYVDSGFVFTTKVGTPIEPRNFLRTFYRITEKAGL--NINFHALRHTFATRLLEANTNPK 349

Query: 282 SIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
            +Q +LGH  +STT  IY++V        + EI
Sbjct: 350 VVQELLGHSDISTTLNIYSHVLFDTKQKAIEEI 382


>gi|291550344|emb|CBL26606.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 397

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/294 (17%), Positives = 113/294 (38%), Gaps = 38/294 (12%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +    E+K+    I  +  ++ + +  + + +  G +++      +K+      +     
Sbjct: 110 MRILQEDKLGACRIENVKLSDAKEWALRMKEKGYGFKTINNHKRSLKAAFYTAIQDDCIR 169

Query: 110 ESNI-LNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     +  + + ++ P+  L+  Q    +  V     H+  +    +  I+  L G G
Sbjct: 170 KNPFDFQLNTVLEDDTEPKEPLSPTQEAAFLSFV----QHDKVYQKYYDEIII--LLGTG 223

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAIL 211
           LRISE   LT  +I  D+  + +                       R++P+   V +A  
Sbjct: 224 LRISELCGLTEADIDLDKQLIHVDHQLLKIADVGYYVETPKTKSGNRVIPMSEKVLEAFQ 283

Query: 212 EYYDLCPFDLNL---NIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGLPLST 260
              +   +   +        LF    G P        +  G+ ++Y +   + + LP   
Sbjct: 284 RVLNKRKYAQPVILEGYTKFLFLNRNGLPKVAVNYESMFRGLVRKYNKT--QKVALPKVM 341

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST-TQIYTNVNSKNGGDWMMEI 313
           T HTLRH+F T L + G + +++Q I+GH  ++     Y +  S+     M  +
Sbjct: 342 TPHTLRHTFCTTLANAGMNPKALQYIMGHSNINMALNYYAHTTSETSITEMKRL 395


>gi|265757008|ref|ZP_06090870.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263233507|gb|EEZ19136.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 420

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/292 (20%), Positives = 113/292 (38%), Gaps = 30/292 (10%)

Query: 31  LSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSL 88
            S +T+  Y+   R+   F+  FY ++ IT     +LS   I+AF    +T+  +   ++
Sbjct: 138 YSPVTINRYKNVLRKLETFVPRFYEKDDITFH---ELSPDFIKAFDVFLKTEAGLCRNTI 194

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R +  +K        ++   +      + +++  + P  L   +   +++        E
Sbjct: 195 VRYMKCLKKITNMAIAKEWMRKDPFYGYK-MEQDETDPVFLTNNELQAIMNRNFDIPRLE 253

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
                     I       GL  ++  +L P+++  D +      KG          S   
Sbjct: 254 LV------KDIFLFACFTGLAFADVSTLRPEHLEQDNNGDWWIRKGRVKLERRRKSSSIA 307

Query: 209 ---------AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
                    AIL+ Y+  P  L     LP+    +           Y++++  + G+  +
Sbjct: 308 NVPLLPVPLAILKKYESHPICLKQGTCLPVVCNQKA--------NSYLKEIADFCGIKKN 359

Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            T H  RH+FAT + L+N   L+ + ++LGH     TQ Y  V  +N  D M
Sbjct: 360 LTTHAARHTFATTVTLANNVPLQEVSAMLGHASTRMTQHYARVMDRNLKDNM 411


>gi|163782181|ref|ZP_02177180.1| hypothetical protein HG1285_18649 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882713|gb|EDP76218.1| hypothetical protein HG1285_18649 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 288

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 64/311 (20%), Positives = 129/311 (41%), Gaps = 42/311 (13%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ++  + W +NL  ER  ++ T ++Y    + F+  +       I  + + ++S  +I  +
Sbjct: 1   MEVLELWKRNL--ERTKNQRTTEAYVRHIKNFIDTV------NIGEEELLKVSSAQIFKY 52

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR----------NLKKSNS 124
           +    +  +G  SL  +LS +K F K+L +R+        ++           N KK  +
Sbjct: 53  VD---STDLGPTSLLANLSALKHFFKFLLRREYIDRDRFTDIEQAIEELREELNAKKRPT 109

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
            P+AL +++   + + V             R   I  L    G+R+ E  +L   +   D
Sbjct: 110 YPKALTKEEVDNIFNAVK----------GKRYEKIYSLFLYSGIRLGEFENLDKSSFYLD 159

Query: 185 QS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
           +S    +R++    K     L P + +   E Y +    L                +  G
Sbjct: 160 KSGILWIRLEPHMTKRNKGRLAPVLAQDRDETYRITDRILKWIENY-----EENFRVKRG 214

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTN 300
           V Q Y  +L + LG+P S   H+ RH++ T+L+++G  +  ++   GH  + TT + Y  
Sbjct: 215 VLQVYTDRLSKRLGIPFSV--HSFRHTYITNLVNSGFPVEVVKEFAGHSNIKTTIETYYK 272

Query: 301 VNSKNGGDWMM 311
            + +   + + 
Sbjct: 273 FSQRRAEELVK 283


>gi|308185145|ref|YP_003929278.1| integrase/recombinase (xerD) [Helicobacter pylori SJM180]
 gi|308061065|gb|ADO02961.1| integrase/recombinase (xerD) [Helicobacter pylori SJM180]
          Length = 355

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 68/283 (24%), Positives = 118/283 (41%), Gaps = 16/283 (5%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           K T+        Q L     Y  + + +++ R LS  ++  F+ +   Q     S+ + +
Sbjct: 69  KHTI------MMQGLFLFFEYFRDNLKLRSFRMLSEEQVINFLFEL-AQNRKPSSMAKYV 121

Query: 93  SGIKSFLKYLKKRKITTESNIL-NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
             ++ F  YL ++K       L N+   K   SLPR LN K   + +  +L +    T  
Sbjct: 122 MYLRQFFDYLDRKKHYNFDFALKNLAFAKTKESLPRHLNYKDLKSFLKTLLEYKP--TTS 179

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKA 209
            + RN  +L ++   GLR  E L++  ++I  ++   ++ IQGKG K R   +  S+ + 
Sbjct: 180 FEKRNKCVLLIVILGGLRKCEVLNIELKHIQVEEQNYSILIQGKGRKERKAYIKKSLLEL 239

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL----STTAHTL 265
            L  +      L       LF+  + K  N      +I  + +   +       T  H  
Sbjct: 240 SLNAWLSDDCRLKYFNGAYLFKKDKQKSQNSLTLYNFIPLIFKLAQIKHYKQYGTGLHLF 299

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           RHSFAT +     DL      LGH  L +T+IY +   ++   
Sbjct: 300 RHSFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHNKK 342


>gi|119668679|emb|CAL23817.1| integrase [Staphylococcus aureus]
          Length = 391

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/313 (15%), Positives = 103/313 (32%), Gaps = 43/313 (13%)

Query: 36  LQSYECDTR----QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           L+ Y  D +    +       +  E+   + I+ +   + + F+     Q      +   
Sbjct: 73  LKQYANDVKVSSVRARKKAIQHAIERFNTKPIQTIKKHDYQRFVDDMSAQ-YSKNYVDSI 131

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL---------PRALNEKQALTLVDNVL 142
           ++      KY    ++        ++  KK  S+          + L + +    ++   
Sbjct: 132 VASTNMIFKYAYDMRLIKAMPSDGIKRPKKKVSVEELEDIEIHKKFLEKDELFQFLEVAK 191

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP- 201
            H S +  +       I   L   G+R  E L+L   +I  + +T+ I            
Sbjct: 192 YHHSPQNSFE------IFTTLAYTGMRAGELLALKWSDIDFENNTISITKTYYNPNNNKK 245

Query: 202 -----------------LLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPG 241
                            + P V + + +Y           + +    +F  + G PL   
Sbjct: 246 HYQILTPKTESSIGKISVDPHVIQLLKDYKIYVQDTWKNELYVDNNFVFTDLNGYPLVIK 305

Query: 242 VFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYT 299
               +I+ + +   +     + H+ RH+    L+  G  ++ IQ  L H  ++TT  IY 
Sbjct: 306 KLSTWIQAIMKKTDITNKHISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYA 365

Query: 300 NVNSKNGGDWMME 312
            + +    D   +
Sbjct: 366 KITNSYKKDASQK 378


>gi|186687194|ref|YP_001870337.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186469497|gb|ACC85296.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
          Length = 337

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 58/289 (20%), Positives = 115/289 (39%), Gaps = 19/289 (6%)

Query: 20  NWLQNLEIER--GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            W++ LE  R   L+  + + YE + ++FL +   +  E +  + +  L    +R  I  
Sbjct: 38  RWVKVLEFLRSNNLAPNSRKLYERELKRFLAWSELHYHE-LRPRHLA-LYKEYLRDEIRT 95

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKR--KITTESNILNMRNLKKSNSLPRALNEKQAL 135
                +   S+   ++ +KSF K++     +I   +  L ++  K      ++L  ++  
Sbjct: 96  DAGNPLSKSSINAGIAALKSFFKWMSYTYPEIIATNPTLGIKLEKVPLPPAQSLTPEEME 155

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            +   + L    + +     ++A++++L   GLR  E + L   +       L    K +
Sbjct: 156 RVWSALELLQETKQR-----DTALVHIL-SHGLRAGEVVQLNVGSFDGKLLFL-PDTKTN 208

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRG----KPLNPGVFQRYIRQL 250
           + R+VPL    R+ + EY  L       LN   PL          + L+       +  +
Sbjct: 209 EPRLVPLRKESREVLAEYLQLRSQQGEVLNSDSPLMISHHASYKGERLSYHGIYFAVENI 268

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                +      H+ RH++AT LL  G D    + + GH      + YT
Sbjct: 269 GELAQIE-DLHPHSFRHTYATDLLLLGVDPSHARKLTGHQSEKAFRRYT 316


>gi|332360049|gb|EGJ37863.1| phage integrase family prophage Sa05 [Streptococcus sanguinis
           SK1056]
          Length = 391

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 101/278 (36%), Gaps = 33/278 (11%)

Query: 63  IRQLSYTEIRAFISKRRTQKIG---DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           I +++ + I+ FI+    + +      S+ R +      L++    ++   +   ++   
Sbjct: 120 IDKITPSSIQEFINNLAYKIVNFKEINSINRRI------LQHGVTLQLLASNPGRDVILP 173

Query: 120 KKSNS---LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           KK        + ++       +D           +       +  LL   G RI E  +L
Sbjct: 174 KKQKKGREAVKFIDPDDLKMFIDY--AEKLSTKSYKHYYRFVVFKLLLATGCRIGELAAL 231

Query: 177 TPQNIMDDQSTLRI-------------QGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLN 222
              +I   + T+ I                    R + +       + +Y +      L 
Sbjct: 232 EWSDIDLKEKTITISKTYSQEIRMIGETKTKAGTRKISIDSKTALMLKQYQNRQRLMFLE 291

Query: 223 LNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
           +  Q P  +F     + L     Q+ I +    LG+P   T H  RH+ A+ LL+ G   
Sbjct: 292 VGAQAPSVVFATTVREYLPRHSLQQIIDKRCETLGIPR-FTCHAFRHTHASLLLNAGISY 350

Query: 281 RSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQT 317
           + +Q  LGH  +S T  +Y++++     + +   Y++ 
Sbjct: 351 KELQYRLGHSNISMTLDVYSHLSKDKEKEAV-SYYEKA 387


>gi|268592413|ref|ZP_06126634.1| type 1 fimbriae regulatory protein FimB [Providencia rettgeri DSM
           1131]
 gi|291312200|gb|EFE52653.1| type 1 fimbriae regulatory protein FimB [Providencia rettgeri DSM
           1131]
          Length = 185

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 74/180 (41%), Gaps = 8/180 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + +   +  +L+D        +      R+  +L + +  GLR+SE   +T  +I   Q 
Sbjct: 5   KFITRTEVNSLLDAT------KQGRYPNRDYCLLLMSFLHGLRVSELTHITMSDIDLVQK 58

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            + I+  KG    + P++P    AI ++               LF   +G  ++     R
Sbjct: 59  VIFIRRLKGGLSTVQPIIPEEFNAIEKWLVERD-SWKTAGSDCLFISQKGSQISRYQIYR 117

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
              Q  +  GLP+    H LRH+    L   G D R IQ  LGH  ++ T IYT  N K 
Sbjct: 118 LFEQYGKIAGLPVKLHPHMLRHACGYALADLGRDTRLIQDYLGHRNIAHTVIYTASNEKR 177


>gi|295426011|ref|ZP_06818685.1| phage integrase family integrase/recombinase [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064327|gb|EFG55261.1| phage integrase family integrase/recombinase [Lactobacillus
           amylolyticus DSM 11664]
          Length = 364

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 65/350 (18%), Positives = 125/350 (35%), Gaps = 51/350 (14%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF-------- 52
           M+      ++  EL ++   ++     +  L+  T+  Y  + R+F  +L          
Sbjct: 1   MDSKQYARLIDKEL-QDLPTYVFYYTQQPNLAVTTVYQYLTEFRRFFDWLRETPADFEHP 59

Query: 53  --------YTEEKITIQTIRQLSYTEIRAFISKR--RTQKIGDR----SLKRSLSGIKSF 98
                    + + I + T+  L  ++I+ F+ +   R  K   R    ++ R+++ ++S 
Sbjct: 60  DQGTISNAKSNKDIELSTLEHLQASQIQMFLKELSFRQNKQSTRDSKKTINRTINALRSL 119

Query: 99  LKY-------LKKRKITTESNILNMRNLKKSNSLPRALNEK------------QALTLVD 139
             Y                + +L +  +K S       N K            + L  + 
Sbjct: 120 FHYLTVTADLNNGEPYFYRNVMLKVPLVKGSKESISYRNAKFSPMLYTGEKKHEWLDFIS 179

Query: 140 NVLLHTSHETK-----WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           N   HT          +   R+ A++ +L G G+R+SE   L  +++     ++ +  KG
Sbjct: 180 NQYEHTLSSRARSSFLFNKERDLAVIAMLLGSGIRVSELARLNLKDLNLRDRSILVIRKG 239

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGI---RGKPLNPGVFQRYIRQL 250
           +K     +       I  Y D+          +  LF        K +     +R++ + 
Sbjct: 240 NKKDAPLIADWAMPYIKSYLDIREKRYQPAKNEQALFLTKYAGHAKRIATNTVERFVGKY 299

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                    TT H LRHS  T L     D+  + S LGH  +S T  Y  
Sbjct: 300 SEAFPDGNRTTPHKLRHSLGTELYDESKDVMVVASQLGHTGISATDQYIQ 349


>gi|226950799|ref|YP_002805890.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
 gi|226840759|gb|ACO83425.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
 gi|322807682|emb|CBZ05257.1| tyrosine recombinase xerD [Clostridium botulinum H04402 065]
          Length = 199

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 82/190 (43%), Gaps = 10/190 (5%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L +++A+ L + ++            R+ A+  + Y CGLR SE   +   +   D+ 
Sbjct: 10  KYLTQQEAIRLFNAIIFS----DNSHAVRDLALFRVAYRCGLRASEISLIKLDDYNADKG 65

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            L  +  KG     + L  + +KA+  Y        N      LF+  +  P++      
Sbjct: 66  DLYCKRLKGSNNNTIRLDATTKKALDTYIRDYKIFCNSET---LFKSQKNNPISRQTLDY 122

Query: 246 YIRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            +++  +   +   +    HTL+H+ A HL  +  D++ +Q  LGH  +S T+IY    +
Sbjct: 123 LMKKYCKIANISDKSKHHFHTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEIYFQFTT 182

Query: 304 KNGGDWMMEI 313
           K      M++
Sbjct: 183 KQQEKMYMKL 192


>gi|139439113|ref|ZP_01772565.1| Hypothetical protein COLAER_01575 [Collinsella aerofaciens ATCC
           25986]
 gi|133775460|gb|EBA39280.1| Hypothetical protein COLAER_01575 [Collinsella aerofaciens ATCC
           25986]
          Length = 399

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 111/294 (37%), Gaps = 34/294 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI----RAFISKRRTQKIGD 85
           GLS  ++ +Y    R  +       E  I      QL   ++    R  ++ R  + +  
Sbjct: 87  GLSDNSVATYRSVVRTMV-------EPTIGRLPYDQLEPWDVSAAYRMLLAPRSGKGLSP 139

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE---KQALTLVDNVL 142
           ++L +  + +K   +    R       +L++         P AL+E    +    + + +
Sbjct: 140 KTLLKMHALLKGAYR--SWRPALGRDIMLDVPAPSPDPVEPFALSELDTDELSRALASAM 197

Query: 143 LHTSHETKWIDARNSAI-LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG--------- 192
              S     I  R  A+ +YL    GLR  E   L  ++       L + G         
Sbjct: 198 SSRSASGANISRRTEALAVYLALNTGLRCGEICGLQRRDWRRALHDLHVVGQAVEHPELH 257

Query: 193 -----KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL--NPGVFQR 245
                KG ++R V L P+V   +  + D     L       L            P     
Sbjct: 258 RQAYTKGRRVRNVALAPAVEAQLQRHLDWQDTWLARKGPTALVVTFGPAGAIARPSTVTS 317

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIY 298
             + L R LGLP  T  H+LRH+ A+ LL NG D+R+IQ  LGH  + TT  IY
Sbjct: 318 RFKSLVRDLGLPEETVFHSLRHTHASWLLMNGFDMRTIQERLGHASVKTTLDIY 371


>gi|253572770|ref|ZP_04850170.1| int [Bacteroides sp. 1_1_6]
 gi|251837670|gb|EES65761.1| int [Bacteroides sp. 1_1_6]
          Length = 411

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 56/292 (19%), Positives = 109/292 (37%), Gaps = 29/292 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K TL+ Y    +    FL   Y  + I ++ +     ++   F+  R  +     ++  
Sbjct: 130 AKGTLEKYRVVYKHLQEFLDIRYHVKDIALKELTPAFISDFEMFL--RTDKHCCTNTVWL 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +  +++ +      +  T         +KK  +    L + +   L++  L +   E  
Sbjct: 188 YVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKDEIRLLMEGKLKNAKQE-- 244

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRI-QGKGDKIRIVPLLPSV 206
                   +       GL  ++  +LT +N     D+   + I + K   +  + LL   
Sbjct: 245 ----LYRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRKKTGVVSNIRLLDIA 300

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            + I +Y  LC                R  P+ +       IR + +  G+    T H  
Sbjct: 301 NRIIGKYRGLCE-------------NGRIFPVPHYNTCLAGIRAVAKRCGITKHITWHQS 347

Query: 266 RHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           RH+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +     M  +  +
Sbjct: 348 RHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMENLAAR 399


>gi|303238111|ref|ZP_07324650.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302481706|gb|EFL44762.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 407

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 61/309 (19%), Positives = 116/309 (37%), Gaps = 26/309 (8%)

Query: 14  LLKERQNWLQNLEIE--RGLSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTE 70
            L     ++ ++  +  + L+K T   Y+   + F  FL A Y    I +  +      +
Sbjct: 109 FLPVFDKYIDSITQQVGKTLTKGTFYKYKVVRQNFQSFLQAKYHRRDIGLSELTSAVVQD 168

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
              +++      + + + K  L  +K+ + Y + R +       N   L         L 
Sbjct: 169 FELYLTS-VVGGVHNTTTK-KLRNLKTVVNYARNRGLIMHDPFAN-HKLHYELVDRGYLT 225

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQST 187
           E++ L ++           +    +N  I       GL   +  +LT   I+   D Q  
Sbjct: 226 EEEVLRIMKKHF----DIERLELVKNIFIFSCF--TGLAYIDVYNLTYDKIVTVEDRQWL 279

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           +  + K      V LL      I +YYD+               G     ++      Y+
Sbjct: 280 ITKRYKTSVDENVMLLDIPLAIIRKYYDINRKG-----------GKVFPMMSNQRINSYL 328

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +++    G+  + T H  RH+FAT  +S G  + S+  +LGH  +  TQIY  + +K   
Sbjct: 329 KEIADLCGIKKNLTFHMARHTFATMSISKGVPMESVSKMLGHTNIRITQIYARITNKKVE 388

Query: 308 DWMMEIYDQ 316
             M ++ D+
Sbjct: 389 HDMEQLADK 397


>gi|160887404|ref|ZP_02068407.1| hypothetical protein BACOVA_05423 [Bacteroides ovatus ATCC 8483]
 gi|156107815|gb|EDO09560.1| hypothetical protein BACOVA_05423 [Bacteroides ovatus ATCC 8483]
          Length = 390

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 96/278 (34%), Gaps = 39/278 (14%)

Query: 51  AFYTEEKITIQTIRQLSYTEIRAFISKRRT-----------QKIGDRSLKRSLSGIKSFL 99
            +  E       + +++    R ++   R            + I + +  R L    + L
Sbjct: 126 KYLDETNKGFIALEEVNAEFCRGYVKFLRNFPNSHIKYGEPRPISENTASRYLGMFSTAL 185

Query: 100 KYLKKRKITTESNILNMRN-----LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
               ++ I   + +  +        K+       L  ++  TL+       + ++   + 
Sbjct: 186 NNAVRQGIIRNNPMKELDARERIQPKEGKK--EYLTIEELRTLI-------ATDSYRPEV 236

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           + + I       GLR+S+   L P +I    D     I  +  K     ++P   +A   
Sbjct: 237 KEAFIFACF--TGLRLSDMYRLAPMHIFKTADGKGEYIDMEMQKTEKPVIIPLSEEA--- 291

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                         +P F      P    V  R + +     G+    + H  RH+F T 
Sbjct: 292 ---KRWLPKPRGNDIPFF----DIPTTQTVIGRALHKWAEAAGIEKHISFHCSRHTFGTM 344

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           +L+ G DL +   ++GH  + TT+IY  +  K   + +
Sbjct: 345 MLTLGADLFTTSKLMGHSNIQTTEIYAKIVDKKKEEAI 382


>gi|325955991|ref|YP_004286601.1| integrase family protein [Lactobacillus acidophilus 30SC]
 gi|325332556|gb|ADZ06464.1| integrase family protein [Lactobacillus acidophilus 30SC]
          Length = 410

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 67/322 (20%), Positives = 124/322 (38%), Gaps = 53/322 (16%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGD 85
           +++GL   T  +Y      F+       +E +    +R L  T+I+ F ++      +  
Sbjct: 81  VKKGLKPNTYNNYRYMYDHFV-------QESLGKYKVRTLHRTDIKRFYNRLVDIDGLKI 133

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            ++      I   L+   +  I  ++   N +R+LKK   L  A  +++ALT+    L  
Sbjct: 134 DTVGTIHLIIHQILQLAVEDDILRKNVSDNGLRDLKKVRGLHGA--KRKALTVAQQNLFL 191

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------- 193
              ++            ++ G GLR+ E   L  Q+I    + + +              
Sbjct: 192 NFVKSSPKYRHWYPTFAVMVGSGLRVGELTGLRWQDIDFQNNLINVNHTLIFYDRSKAKY 251

Query: 194 ----------GDKIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKP 237
                         R VP++ SV++A  E         LC  D+    +  +F    G  
Sbjct: 252 TGFGINTPKTKAGYRSVPMIASVKEAFEEQKQYLKDNDLCSIDVIDGFKDFIFVNRFGHV 311

Query: 238 LNPGVFQRYIRQLRRYLGLP--------------LSTTAHTLRHSFATHLLSNGGDLRSI 283
            + G   + I+++ R                    + + HTLRH+F T L+ +G +++ I
Sbjct: 312 QHQGTLNKAIKRIIRDANFDALEKNPAIKEENLLPNFSCHTLRHTFTTRLIESGMNIKVI 371

Query: 284 QSILGHFRLSTT-QIYTNVNSK 304
           Q  LGH  + TT  IY +V  +
Sbjct: 372 QEALGHSDIQTTLDIYADVTKE 393


>gi|314950814|ref|ZP_07853885.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
 gi|313596990|gb|EFR75835.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
          Length = 371

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 53/318 (16%), Positives = 118/318 (37%), Gaps = 42/318 (13%)

Query: 18  RQNWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
            + +L     E     L   T ++Y    +        +    +  + +  LS   ++ F
Sbjct: 57  VKQYLDFWMEEYVKLNLKYNTYENYRFTIK-------NHINGYLGKKKLTDLSPALLQNF 109

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQ 133
           I+    +    +++  + S +K+ L        +  ++ +L ++  K     P    + +
Sbjct: 110 INAEFKKGYSKKTMTITHSVLKNALNMAVYPWGLIKQNPMLYVKIPKYEAR-PTTKKDLK 168

Query: 134 ALTL--VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            ++L   D++L  T     +        L + +  G+R+ E   LT  ++     T+ ++
Sbjct: 169 IISLEDFDHMLEITPEGHPFYIP-----LNIGFYTGMRVGEVCGLTWDDVDFSNGTITVE 223

Query: 192 GKG---------------DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
            +                   R + +  ++   + ++      +     +L +       
Sbjct: 224 KQMVKNDGAWVYGTPKTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCT 283

Query: 237 P-----LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
                 + P V +   R++   L L  +   H+LRH+ AT LL NG  ++ I   LGH R
Sbjct: 284 KEDGELVTPSVVKWNTRRISNALSLSFN--FHSLRHTHATLLLENGAKMKEISERLGHSR 341

Query: 292 LSTTQ-IYTNVNSKNGGD 308
           +S T   Y++V  K   +
Sbjct: 342 ISITMDTYSHVTDKMRNE 359


>gi|255016170|ref|ZP_05288296.1| integrase [Bacteroides sp. 2_1_7]
          Length = 420

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 99/260 (38%), Gaps = 19/260 (7%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           + I+++ +  +    +RA +   +   I   +     S +K+ LK     +  T      
Sbjct: 173 KTISVKLLEDIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEYLTVDISAK 232

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           ++ +        AL   +   LVD         T   D             GLR S+  +
Sbjct: 233 VKGITNIEKPRVALTMNEVQMLVD---------TPCKDDVLKRAFLFSILTGLRHSDIQT 283

Query: 176 LTPQN-IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           L  +      + T +      K +     P +++A+         D  L     +F G+ 
Sbjct: 284 LRWKQIQQTSKGTWQAVVIQQKTKRPDYKPVIQQALQLCGIRPDDDEAL-----VFEGLT 338

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
               +     R ++      G+    T H  RHS+A+ LL NG D+ +I+S++GH  + T
Sbjct: 339 ----DASWISRPLKVWIEASGIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKT 394

Query: 295 TQIYTNVNSKNGGDWMMEIY 314
           TQIYT++ ++        ++
Sbjct: 395 TQIYTHIVNEQKEKAANTLH 414


>gi|76811922|ref|YP_333498.1| phage integrase family protein [Burkholderia pseudomallei 1710b]
 gi|76581375|gb|ABA50850.1| phage integrase family protein [Burkholderia pseudomallei 1710b]
          Length = 559

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 65/341 (19%), Positives = 122/341 (35%), Gaps = 39/341 (11%)

Query: 5   NLPEIVSFE--LLKERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           +L E V+ +    KE +  +    +ER   LS LT      D   +  FL   T  +  +
Sbjct: 222 SLHESVATQRAYRKEAERLILWAIVERNCALSSLT----TDDAIAYRSFLRRPTPRERWV 277

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--- 117
              R     E R F        +  RS   +L+ + +  ++L +++    +    ++   
Sbjct: 278 GPSRPRHSVEWRPF-----NGALSPRSAAYALNVLSAMFRWLVEQRYVLANPFAGIKVKS 332

Query: 118 -NLKKSNSLPRALNEKQALTL--VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
              +    + R  +E + L +  + + L  +   +     R   +L   Y  GLR SE +
Sbjct: 333 HAPRAGLDVSRGFSEGEWLLIRTLADGLEWSYGWSAPAAQRLRFLLDFGYATGLRASELV 392

Query: 175 SLTPQNIMDDQS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLP 228
                +I  D+     L + GKG K+  V L    R A+ +Y       +     N   P
Sbjct: 393 GAKLGDIRRDEHGDHWLHVLGKGGKLGKVALPSLARTALDQYLVQRGLPVTPERWNPATP 452

Query: 229 LFRGIRGK--PLNPGVFQRYIRQLRRYLGLP------------LSTTAHTLRHSFATHLL 274
           L   +      +      R + +                       + H +RH+ A+H L
Sbjct: 453 LVVSLEEDGARIESTRLWRVLCRFFVLAADTIQDERPATAEKLRCASPHWMRHTHASHAL 512

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           + G +L  ++  L H  +STT  Y + +         + + 
Sbjct: 513 ARGAELIMVRDNLRHASISTTSTYLHSDEVQRARQFDQAFR 553


>gi|237722727|ref|ZP_04553208.1| bacteriophage integrase [Bacteroides sp. 2_2_4]
 gi|293373708|ref|ZP_06620055.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|317473968|ref|ZP_07933247.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|229448537|gb|EEO54328.1| bacteriophage integrase [Bacteroides sp. 2_2_4]
 gi|292631363|gb|EFF49994.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|316909810|gb|EFV31485.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 380

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 94/268 (35%), Gaps = 33/268 (12%)

Query: 63  IRQLSYTEIRAFISKRRT-------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           +  +       +I   R+       ++I  ++     + +++ L    + ++   +    
Sbjct: 133 LCDVDRQFYIDYIDWLRSSCKTAWGKQITPKTAHSYYTTLRTALNEAVRERLIESNPWYK 192

Query: 116 MR---NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           +     +K   S    L  ++   ++     +      ++ +           CGLRIS+
Sbjct: 193 LEMTEKIKVPESKRDFLTIEEIKKMIATPFFNEQVRQAYLFSC---------FCGLRISD 243

Query: 173 ALSLTPQNIMDDQSTL---RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
              L  ++I           +  K      +PL     K + E  + C  D  +   LP 
Sbjct: 244 IRKLRWRDISISGGQWLVSVVMTKTTNPVYIPLSSQAVKWLPE-RNGCTPDGLVFGGLP- 301

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
                    N       ++      G+  + T HT RHS A  LL+ G D+ ++  ILGH
Sbjct: 302 ---------NTSNLCVSLKNWADKAGVKKNVTFHTARHSCAVLLLTLGADIYTVSKILGH 352

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
             +  TQ+Y  +  K   D +  + D  
Sbjct: 353 RSVRATQVYAKIVDKKKDDAITLVDDAF 380


>gi|302870559|ref|YP_003839196.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
 gi|302573418|gb|ADL49620.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
          Length = 491

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 65/339 (19%), Positives = 112/339 (33%), Gaps = 63/339 (18%)

Query: 20  NWL-QNLEIERGLSKLTLQSYECDTRQFL------------------IFLAFYTEEKITI 60
            +L   LE  RGL++ T++ Y    R +L                          ++  I
Sbjct: 136 EYLTAWLEGRRGLAEKTVRGYSDHIRLYLVPHLGKIPIQSLRTAHIEAMFTAIGRQQDAI 195

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGD---RSLKRSLSGIKSFLKYLKKR-KITTESNILNM 116
           +  R  +  ++RA     R + +      S++R  + ++  L     R K+   +  L +
Sbjct: 196 RAARASTDPDVRA-----RVKGVRPMEASSIQRLYATLRKALNDAVVRAKLIPTNPALGV 250

Query: 117 RNLKKSNSLPRALNEKQALT----------LVDNVLLHTSHETKWIDARN---SAILYLL 163
                     R    K              ++  +         + +  +    A+  L+
Sbjct: 251 ELPTAKRPKARVWTVKAVEHWHATGKRPSPVMVWMPAQAGRFLDYTERHDIVLYAMFLLI 310

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQ---------------GKGDKIRIVPLLPSVRK 208
              GLR  EA  L   ++  D   L +                      R+VPL P    
Sbjct: 311 LHRGLRRGEACGLRDHDVDLDAGYLTVVEQITTVGYTPITRPVKSDAGDRMVPLGPKTIA 370

Query: 209 AILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
            +  Y D+     +++          F    GKP +P         L     LP     H
Sbjct: 371 VLRTYLDMRRRWKSVSGDDWPDTGLFFVRPDGKPWHPQTISDRFDHLVAKAKLP-PVRLH 429

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNV 301
            LRH  AT+L   G D++ +Q  LGH  +  T+  YT+V
Sbjct: 430 DLRHCAATYLRHGGADMKEVQETLGHSTIGLTSDTYTSV 468


>gi|229164788|ref|ZP_04292620.1| DNA integration/recombination/invertion protein [Bacillus cereus
           R309803]
 gi|228618691|gb|EEK75685.1| DNA integration/recombination/invertion protein [Bacillus cereus
           R309803]
          Length = 370

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 105/271 (38%), Gaps = 31/271 (11%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           + +L+   ++ +++  R   +   ++++ +  I++ L++    ++ T++     +  K  
Sbjct: 107 LAKLTSLHMQNYVNSLRDDGLKRGTIEKIIKFIRNSLEHAIDLELITKNVATKTKLPKGD 166

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
                  NE++    +              D R S + ++    G+R  E L L  +++ 
Sbjct: 167 KEELTVWNEQEVQLFLKA----------AQDGRYSMVFHMALVTGMRQGELLGLRWKDVD 216

Query: 183 DDQSTLRIQ--------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
            ++  L I                    +R + L  S    + ++  +   +     +  
Sbjct: 217 LEKGHLTISQTLSHDGKTFLLGGKTKSSLRKILLPASTVAGLKKHRAVVLKEKLSQGEEY 276

Query: 229 -----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                +     G P+NP   +R +  L R   +P     H LRH+ AT LL+ G +++ I
Sbjct: 277 QDNDLVMCTPSGTPINPANVRRSLNALIRKAAVPK-IRFHDLRHTHATLLLAKGVNVKVI 335

Query: 284 QSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
              LGH  +  T   Y++V      D + +I
Sbjct: 336 SERLGHSNIKITLDTYSHVLPTMQEDAVNKI 366


>gi|107022780|ref|YP_621107.1| phage integrase [Burkholderia cenocepacia AU 1054]
 gi|105892969|gb|ABF76134.1| phage integrase [Burkholderia cenocepacia AU 1054]
          Length = 507

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 70/320 (21%), Positives = 121/320 (37%), Gaps = 34/320 (10%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +ERG +  +L S   D   +  FL   T     +   R     E R F     T  +   
Sbjct: 196 VERGKALSSLTS--EDATAYRAFLRHPTPRARWVAPARPRPSPEWRPF-----TGALSPD 248

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-----LPRALN--EKQALTLVD 139
           S+  +LS + +  ++L +++    ++   +R ++ +       + RA    E + +  + 
Sbjct: 249 SIAYTLSVLSAMFRWLIEQRYVLANSFAGLR-VRGAQRNGELDISRAFTAGEWELVRTIA 307

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDK 196
           + L  +   T     R   +L   Y  GLR SE + +T   I      +  L + GKG K
Sbjct: 308 DGLERSHGWTVPAAQRLRFVLDFGYATGLRASELVGVTLGGIETGARGERWLHLTGKGAK 367

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLF-----RGIRGKPLNPGVFQRYIR 248
              V L P    A+ +Y       +         PL       G    P    V +R+  
Sbjct: 368 AGKVVLPPLATHALDQYLVQRGLPVTSARWQPDTPLLGHLDAPGGITTPRLREVLRRFFH 427

Query: 249 QLRRY--------LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                         G     T H +RH+ ATH L+NG  L +++  L H  ++TT IY +
Sbjct: 428 AAADAIEADHPALAGKLRRATPHWMRHTHATHALANGATLTTVRDNLRHASITTTSIYLD 487

Query: 301 VNSKNGGDWMMEIYDQTHPS 320
            +       +  I+ +  P+
Sbjct: 488 DDEVQRTRQIERIFARRPPA 507


>gi|325297479|ref|YP_004257396.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317032|gb|ADY34923.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 409

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 115/276 (41%), Gaps = 26/276 (9%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
                +F+++   +  + I    + +    + + ++     + +   +++  L+ +K   
Sbjct: 141 RRTLGEFILW--QFKTKDIAFGQLSEQFIHDYQNYV--MDVKGLAVDTVRHYLAILKKVC 196

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           +   K       +  N    +K+   PRAL+ +    + D  +   +  T  I  R+  +
Sbjct: 197 RIAYKEGYAERCHFANFTLPQKTERTPRALSREDFEKIRDVEI--PAWRTTHILVRD--L 252

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGDKIR-IVPLLPSVRKAILEYYD 215
                  G   ++A+S+T  N+  D      L+ + + +++R  V LLP     I +Y+D
Sbjct: 253 FLFACYTGTAYADAVSVTRDNLYTDDEGCLWLKYRRQKNELRASVKLLPEALALIEKYHD 312

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
                   + +  LF  +    L     +R+++ L    G+  +   H  RHSFA+ + L
Sbjct: 313 --------DNRPTLFPMVYHPNL-----RRHMKSLAVLAGVSSTLCYHQARHSFASLITL 359

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
             G  + +I  +LGH  + TTQ+Y  V  K   + M
Sbjct: 360 EAGVPIETISRMLGHSNIQTTQVYARVTPKKLFEDM 395


>gi|262383667|ref|ZP_06076803.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|262294565|gb|EEY82497.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
          Length = 407

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 57/302 (18%), Positives = 107/302 (35%), Gaps = 27/302 (8%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             Q + + + + R  S  T + YE      + FL       ++     +L  + I A+  
Sbjct: 116 HNQEFFKRVGVNREKS--TAEQYEISLNHLIRFLRKKY--NVSDVPFTKLDLSFIEAYDF 171

Query: 77  KRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
             R + K+   ++   +  ++  +K      I            ++  +  + L  ++  
Sbjct: 172 YLRVELKLKSNTILGIVRHVRKMIKLAIAEGIIYRDPFDGY-APERPKAEQKYLTREELD 230

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKG 194
            L+   L H S            +       GL   +  +LTP++I+  D   L I+   
Sbjct: 231 RLMKTRLDHPSRYLT------RDMFLFSVFTGLAYRDVCNLTPKHIVRADDGVLWIRTTR 284

Query: 195 DKIRIVPLLPSVR--KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
            K      +P +   K I+E Y     D           G     L+ G   + ++ +  
Sbjct: 285 QKTGTPCDIPLLGLPKQIIEKYKGVAKD-----------GKLLPMLSCGRLNKNLKVIAT 333

Query: 253 YLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              +      H  RH++AT   LS G  + S+  +LGH  L +TQIY  +      + M 
Sbjct: 334 ICKIDRKLIYHAGRHTYATEICLSQGVPIESVSRMLGHRDLRSTQIYAKITEHKIAEDMQ 393

Query: 312 EI 313
             
Sbjct: 394 RA 395


>gi|153811377|ref|ZP_01964045.1| hypothetical protein RUMOBE_01769 [Ruminococcus obeum ATCC 29174]
 gi|149832504|gb|EDM87588.1| hypothetical protein RUMOBE_01769 [Ruminococcus obeum ATCC 29174]
          Length = 425

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 60/343 (17%), Positives = 113/343 (32%), Gaps = 73/343 (21%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           TL +Y     +   ++ +          + ++  T I   I     +     ++ +SLS 
Sbjct: 89  TLSNYVNGFERVREYIGYMR--------LIEVRPTHILDMIKGLEEEGYARTTVIQSLSV 140

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNEKQALTLVDNVLLHTSHETKWID 153
           ++   K     K+     + +++  K+    +P   +EK      D   L      ++++
Sbjct: 141 VRQLFKKAYGGKMIPIDPVADIKLPKEEPGEIP---DEKIMQEQEDEKCLSIYDTHRFLE 197

Query: 154 AR----NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----------------- 192
           +        + ++L   GLRI EAL+L   ++      LR+                   
Sbjct: 198 SCKNTRYYELFFILLHTGLRIGEALALEWCDLDFKHEKLRVYKTLNRVTKYYDLKGNELP 257

Query: 193 ------------KGDKIRIVPLLPSVRKAILEYYDLCPFD---LNLNIQLPLFR------ 231
                       K    R VPL  +V  A + + +    D   L  N   P         
Sbjct: 258 ERYSTIQITTPKKSASNRKVPLTDAVIAAFMSWKEKQDRDKEKLGKNWGKPNILLKKYPG 317

Query: 232 -------GIRGKPLNPGVFQRYIRQLRRYLGLP-----------LSTTAHTLRHSFATHL 273
                  G    P +     R I  +     +            +    H  RH+F T  
Sbjct: 318 LIFTTSSGRSYLPSSAQTECRRIVGIVNKHEIALAEKENRDPNLMDVHPHIFRHTFVTRC 377

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           + +G D  +++ I GH     T  YT++  ++  D   E+Y Q
Sbjct: 378 IQSGMDAATVKKIAGHSDEKMTNYYTHIEEEHIDDEY-ELYIQ 419


>gi|239623219|ref|ZP_04666250.1| site-specific recombinase [Clostridiales bacterium 1_7_47_FAA]
 gi|239522185|gb|EEQ62051.1| site-specific recombinase [Clostridiales bacterium 1_7_47FAA]
          Length = 282

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/297 (16%), Positives = 111/297 (37%), Gaps = 28/297 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N++  L+ +   S  T++S     R +                +   +  + + ++    
Sbjct: 8   NFINYLKKQE-ASPNTVKSCLASCRLYYSLF----------DGLNMTNLMQYKDYLL--- 53

Query: 80  TQKIGDRSLKRSLSGIKSFLK--YLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                  ++   + GI  +L      +      +++L+ R           L     ++ 
Sbjct: 54  -NHYKAATVNNRIYGINRYLDSLVQSQDNSADANSVLSFRLPAVQTQQVSFL--DDVISQ 110

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            + V+   S ++         ++  L   G R+SE + +  ++   D   + +  KG K+
Sbjct: 111 ENYVVFKDSLKSDGNMFW-YFVVRFLACTGARVSELIQMKAEH--LDMRYMDLYSKGGKV 167

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R + L  ++    L++      D        +F    G+ + P      ++ L R  G+P
Sbjct: 168 RRIYLPDTLCLEALDWVHQRGID-----SGFIFITSHGQLITPRGISSQLKVLARRYGIP 222

Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                 H  RH FA + L+N  D+  +  ++GH  + TT+IY N ++    + +  I
Sbjct: 223 ADTVYPHAFRHRFAKNFLANFNDITLLADLMGHESIETTRIYLNKSTDEQREMIDRI 279


>gi|126653168|ref|ZP_01725292.1| hypothetical protein BB14905_15515 [Bacillus sp. B14905]
 gi|126590084|gb|EAZ84210.1| hypothetical protein BB14905_15515 [Bacillus sp. B14905]
          Length = 238

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 90/247 (36%), Gaps = 27/247 (10%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L + R+ + QN +IE G S LTL++Y       L F             + + +   ++ 
Sbjct: 3   LSEARKKYQQNKKIE-GYSSLTLKTYCFQYNLLLRFFGDI--------DMNEFNTDRLKE 53

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++  R    +   SL   +  +KS   +  +     +     ++  K    +P+ L+E +
Sbjct: 54  YLI-RSGDHLKASSLGHRVRCVKSLFSWSHEEGYILKHPAAKLKEPKLGKRIPKFLSELE 112

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L D                  A+   +Y  G  I E + L  + I    +++ +QGK
Sbjct: 113 IEHLRDAC----------QTTMEKALFEFMYSTGCHIGEVVKLNREGIDFQSNSVIVQGK 162

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP--LNPGVFQRYIRQLR 251
           GDK + V    S    +  Y      D   + +  LF   R     ++    +  I+++ 
Sbjct: 163 GDKEKEVYFNTSCSIWLKRYL-----DEREDKEPCLFITDRRPKRLMSINNLRYIIKRIS 217

Query: 252 RYLGLPL 258
               +  
Sbjct: 218 NRASIKR 224


>gi|314939813|ref|ZP_07847031.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|314941456|ref|ZP_07848346.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|314949549|ref|ZP_07852882.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
 gi|314992246|ref|ZP_07857685.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|314995374|ref|ZP_07860479.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|313590420|gb|EFR69265.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|313593214|gb|EFR72059.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|313599741|gb|EFR78584.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|313640909|gb|EFS05489.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|313644077|gb|EFS08657.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
          Length = 372

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 53/318 (16%), Positives = 118/318 (37%), Gaps = 42/318 (13%)

Query: 18  RQNWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
            + +L     E     L   T ++Y    +        +    +  + +  LS   ++ F
Sbjct: 58  VKQYLDFWMEEYVKLNLKYNTYENYRFTIK-------NHINGYLGKKKLTDLSPALLQNF 110

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQ 133
           I+    +    +++  + S +K+ L        +  ++ +L ++  K     P    + +
Sbjct: 111 INAEFKKGYSKKTMTITHSVLKNALNMAVYPWGLIKQNPMLYVKIPKYEAR-PTTKKDLK 169

Query: 134 ALTL--VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            ++L   D++L  T     +        L + +  G+R+ E   LT  ++     T+ ++
Sbjct: 170 IISLEDFDHMLEITPEGHPFYIP-----LNIGFYTGMRVGEVCGLTWDDVDFSNGTITVE 224

Query: 192 GKG---------------DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
            +                   R + +  ++   + ++      +     +L +       
Sbjct: 225 KQMVKNDGAWVYGTPKTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCT 284

Query: 237 P-----LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
                 + P V +   R++   L L  +   H+LRH+ AT LL NG  ++ I   LGH R
Sbjct: 285 KEDGELVTPSVVKWNTRRISNALSLSFN--FHSLRHTHATLLLENGAKMKEISERLGHSR 342

Query: 292 LSTTQ-IYTNVNSKNGGD 308
           +S T   Y++V  K   +
Sbjct: 343 ISITMDTYSHVTDKMRNE 360


>gi|154501018|ref|ZP_02039056.1| hypothetical protein BACCAP_04705 [Bacteroides capillosus ATCC
           29799]
 gi|150270042|gb|EDM97561.1| hypothetical protein BACCAP_04705 [Bacteroides capillosus ATCC
           29799]
          Length = 381

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 51/291 (17%), Positives = 109/291 (37%), Gaps = 32/291 (10%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T  SY    +    F             + ++    I +F++K   +      + +  
Sbjct: 87  PSTYSSYRYTLKLLKAFFDHMV--------LSEIKPQHINSFMTKLLKEGCSLSKISKCR 138

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSL---PRALNEKQALTLVDNVLLHTSHET 149
           S +       +   +  ++     + ++  ++      A + ++   L+   L +     
Sbjct: 139 SMLIQIFDAAENNGLILKNPARKAKAIRTQSTEDTGKDAFSYEEV-ALLKKYLRNDLLGN 197

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG--KGDKIRIVPLLPSVR 207
                     + LL G GLR+ E L+L P++I +D S + +    K    +     P  +
Sbjct: 198 S---------IRLLLGSGLRVQELLALRPEDIAEDGSEICVNKAIKMVDGKPTIGPPKSK 248

Query: 208 KAIL------EYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQ-RYIRQLRRYLGLPLS 259
           ++        +Y     +      +  ++   R   L + G F+ +Y   L+R  G+   
Sbjct: 249 RSCRTVPIPEDYRPYAVYLRTHGGKSYIWTSTRKSLLYSVGTFRNKYYAALKRVPGI-RK 307

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              H  RH++ THL +N   L  I  ++GH  +STT  Y +++S+     +
Sbjct: 308 LGPHCCRHTYVTHLEANQVPLAEIARLVGHSTVSTTNRYLHISSETLERAV 358


>gi|69246683|ref|ZP_00604073.1| Phage integrase [Enterococcus faecium DO]
 gi|68195157|gb|EAN09615.1| Phage integrase [Enterococcus faecium DO]
          Length = 375

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 53/318 (16%), Positives = 118/318 (37%), Gaps = 42/318 (13%)

Query: 18  RQNWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
            + +L     E     L   T ++Y    +        +    +  + +  LS   ++ F
Sbjct: 61  VKQYLDFWMEEYVKLNLKYNTYENYRFTIK-------NHINGYLGKKKLTDLSPALLQNF 113

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQ 133
           I+    +    +++  + S +K+ L        +  ++ +L ++  K     P    + +
Sbjct: 114 INAEFKKGYSKKTMTITHSVLKNALNMAVYPWGLIKQNPMLYVKIPKYEAR-PTTKKDLK 172

Query: 134 ALTL--VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            ++L   D++L  T     +        L + +  G+R+ E   LT  ++     T+ ++
Sbjct: 173 IISLEDFDHMLEITPEGHPFYIP-----LNIGFYTGMRVGEVCGLTWDDVDFSNGTITVE 227

Query: 192 GKG---------------DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
            +                   R + +  ++   + ++      +     +L +       
Sbjct: 228 KQMVKNDGAWVYGTPKTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCT 287

Query: 237 P-----LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
                 + P V +   R++   L L  +   H+LRH+ AT LL NG  ++ I   LGH R
Sbjct: 288 KEDGELVTPSVVKWNTRRISNALSLSFN--FHSLRHTHATLLLENGAKMKEISERLGHSR 345

Query: 292 LSTTQ-IYTNVNSKNGGD 308
           +S T   Y++V  K   +
Sbjct: 346 ISITMDTYSHVTDKMRNE 363


>gi|301311823|ref|ZP_07217745.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300829925|gb|EFK60573.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 380

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 94/268 (35%), Gaps = 33/268 (12%)

Query: 63  IRQLSYTEIRAFISKRRT-------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           +  +       +I   R+       ++I  ++     + +++ L    + ++   +    
Sbjct: 133 LCDVDRQFYIDYIDWLRSSCKTAWGKQITPKTAHSYYTTLRTALNEAVRERLIESNPWYK 192

Query: 116 MR---NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           +     +K   S    L  ++   ++     +      ++ +           CGLRIS+
Sbjct: 193 LEMTEKIKVPESKRDFLTIEEIKKMIATPFFNEQVRQAYLFSC---------FCGLRISD 243

Query: 173 ALSLTPQNIMDDQSTL---RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
              L  ++I           +  K      +PL     K + E  + C  D  +   LP 
Sbjct: 244 IRKLRWRDISISGGQWLVSVVMTKTTNPVYIPLSSQAVKWLPE-RNGCTPDGLVFGGLP- 301

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
                    N       ++      G+  + T HT RHS A  LL+ G D+ ++  ILGH
Sbjct: 302 ---------NTSNLCVSLKNWADKAGVKKNVTFHTARHSCAVLLLTLGADIYTVSKILGH 352

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
             +  TQ+Y  +  K   D +  + D  
Sbjct: 353 RSVRATQVYAKIVDKKKDDAITLVDDAF 380


>gi|296451879|ref|ZP_06893596.1| conserved hypothetical protein [Clostridium difficile NAP08]
 gi|296879726|ref|ZP_06903701.1| conserved hypothetical protein [Clostridium difficile NAP07]
 gi|296259261|gb|EFH06139.1| conserved hypothetical protein [Clostridium difficile NAP08]
 gi|296429315|gb|EFH15187.1| conserved hypothetical protein [Clostridium difficile NAP07]
          Length = 424

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 53/340 (15%), Positives = 110/340 (32%), Gaps = 62/340 (18%)

Query: 26  EIERGLSKLTL---QSYECDTR-------------QFLIFLAFYTEEKITIQTIRQLSYT 69
           ++E  ++  T+   + Y+                 Q+      + +       ++ +   
Sbjct: 56  KMEMNVADNTVTLDEWYQKWLEIYKYKVIAPSTRVQYESIYKKHIQTDFGHMKLKDIQPL 115

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +IR  +     +  G  +  +    +           +  ++ + N++ ++     PR L
Sbjct: 116 QIRGKLVNLDKKGFGYETQNKVRILLLDMFNKAVADNVAMKNPVRNIKVVRDEEKEPRVL 175

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           + ++     D     T   T + +  N AI       GLR  E  +L  +++  ++  + 
Sbjct: 176 STEEQSAFFD-----TCKGTFYDNLFNVAI-----STGLRPGELYALEAEDLDFEKKVIH 225

Query: 190 IQG---------------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
           I                            R VP+      A+ +           N    
Sbjct: 226 ITKSLSYQKFEGDTGKTFHMGKTKTKSSYRDVPMNRRCEIALKKQLLQKRVVSGRNGAKT 285

Query: 229 L-------FRGIRGKPLNPGVFQRYIRQLRRYLGLPLS-------TTAHTLRHSFATHLL 274
           L       F      PLN  ++   I+ +   + L           + H  RH+FAT   
Sbjct: 286 LKGFENLIFTTKYDTPLNAQIYADAIKVIVEQINLMREELEQFETFSGHCFRHTFATRCF 345

Query: 275 SNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
             G   +++Q  LGH  L  T  +YT+V   +  D M ++
Sbjct: 346 EAGIQPKTVQKYLGHATLQMTMDLYTHVLENHLSDEMDKL 385


>gi|114762822|ref|ZP_01442254.1| tyrosine recombinase XerD [Pelagibaca bermudensis HTCC2601]
 gi|114544432|gb|EAU47439.1| tyrosine recombinase XerD [Roseovarius sp. HTCC2601]
          Length = 141

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 51/145 (35%), Positives = 71/145 (48%), Gaps = 12/145 (8%)

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP------FDLNLNIQLPLFRGI-RGKPLN 239
            L I+GKG K R+VPL P  R+A+  +                     LF    +   L 
Sbjct: 1   MLLIRGKGGKERMVPLSPPAREALAAWLACRDAQDEAGRAKGKPGSPHLFPSRGKAGHLT 60

Query: 240 PGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              F   I+ +    G+ P   T HTLRH+FATHLL NG DLR+IQ+ LGH  ++TT+IY
Sbjct: 61  RHAFYLQIKDMAVRAGVSPAKVTPHTLRHAFATHLLQNGADLRAIQTFLGHADVATTEIY 120

Query: 299 TNVNSKNGGDWMMEIYDQTHPSITQ 323
           T+V  +     + E+    HP   +
Sbjct: 121 THVLEER----LRELVLDHHPLARE 141


>gi|225027746|ref|ZP_03716938.1| hypothetical protein EUBHAL_02005 [Eubacterium hallii DSM 3353]
 gi|224954950|gb|EEG36159.1| hypothetical protein EUBHAL_02005 [Eubacterium hallii DSM 3353]
          Length = 415

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 58/346 (16%), Positives = 116/346 (33%), Gaps = 59/346 (17%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              W+++  +E+ L++ T+ +Y+   R ++          I    ++ +    +R F+++
Sbjct: 72  FDYWMEHY-VEQELAETTVNTYKKRIRLYIKPY-------IGSYKLKNVQGETLRNFLAE 123

Query: 78  RRTQKIGDRS---LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
                +   +   +K  L+   +F     + K  +      +    K          K+ 
Sbjct: 124 LHRTGMSRNTLTCIKGMLTS--AFGYATVQAKFISVDPSYKLTLPNK-RKDSEVGTRKEN 180

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
              V+  + +   E       +   L L Y CGLR+ E   LT   +  +  T+ I  + 
Sbjct: 181 HIFVEEDMWNAIIERFPEGHPSHLALMLGYYCGLRLGEVYGLTWDCVDFENKTITINKQM 240

Query: 195 DKI------------------------------RIVPLLPSVRKAILEYYDLCPFDLNLN 224
            +                               R +    + ++   EYY     + +  
Sbjct: 241 QEPSGCGKWLLYVPKYDSSRTVTVGNNVLALLKRTLEFQLTDKETCGEYYQENYMNYDEE 300

Query: 225 IQLPL---------FRGIRGKPL--NPGVFQRYIRQLRRYLG----LPLSTTAHTLRHSF 269
               L         F   +   L  +P   Q   R +         +      H+LRH+ 
Sbjct: 301 THSLLSLNDLRPVHFVNAKQGGLLAHPRNMQHTSRSIHGKAKNCTLISEEWDFHSLRHTH 360

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           AT L   G  +  IQ  LGH  + TT+ YT+  +K     + E+ +
Sbjct: 361 ATILYEAGVPMPLIQKRLGHINIQTTKRYTDHVTKKMLSMLDEVIN 406


>gi|108804429|ref|YP_644366.1| phage integrase [Rubrobacter xylanophilus DSM 9941]
 gi|108765672|gb|ABG04554.1| phage integrase [Rubrobacter xylanophilus DSM 9941]
          Length = 377

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 53/304 (17%), Positives = 113/304 (37%), Gaps = 35/304 (11%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T++  +    ++      + +  +    +  L+   +R    +R    +  R+++   + 
Sbjct: 87  TVR--QRTYERYEQISRVHIKPALGRIKLAALTPVHVRGLYRERLDAGLSSRTVRYIHTT 144

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +   L+      +   +    ++         R L+++Q+   ++      + E ++   
Sbjct: 145 LHKALEAAVVDGLIPRNVASTVKAPCPRGPDIRPLSQEQSRKFLE-----VAREDRF--- 196

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG--------------KGDKIRIV 200
              A+  L   CGLR  E L L  +++  +  TL+++               K  K R +
Sbjct: 197 --YALYVLALHCGLREGELLGLKWEDVDLEGGTLQVRRTLSETRTGHKFELPKNGKGRSI 254

Query: 201 PLLPSVRKAILEYYDLCPFDLN-----LNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYL 254
            L     +A+  +      +             +F    G  +    +  R+ + L    
Sbjct: 255 KLSRRAVEALRSHRRRQNEERLRVGSLWQDNDLVFPTTTGTTMRATNLLGRHFKPLLEKA 314

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           GLP     H LRH+ AT LL  G   + +Q +LGH  +S T  IY++V  +     + E 
Sbjct: 315 GLPA-IRLHDLRHTCATILLVAGKHPKYVQELLGHASISITLDIYSHV-IERMDGGLAEA 372

Query: 314 YDQT 317
            D+ 
Sbjct: 373 MDEA 376


>gi|295840995|dbj|BAJ06873.1| integron integrase intI [uncultured bacterium]
          Length = 423

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 108/291 (37%), Gaps = 59/291 (20%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-T 80
           L NL   +  S  T  +Y     +FL           +I  +  LS + I  F+      
Sbjct: 154 LINLIRVKHYSIQTENAYVSWVLRFLNH--------QSIDNLDTLSESHISYFLEYLVIK 205

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +K+   +  ++L+ +  F + + + K++     +     KK   LP  L++ +   L   
Sbjct: 206 RKVSSSTQAQALNALVYFYRNILEIKLSEN---IQFARSKKPKRLPVVLSQAEISKLFSA 262

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRI 199
           +           +     +  LLYGCG+R+ E + L   +I  D   L I+G KG K R+
Sbjct: 263 M----------HNPTFLLMANLLYGCGMRLMECVRLRVLDIDFDYQQLLIRGAKGKKDRV 312

Query: 200 VPL----------------------------LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            P+                               +  A+   Y     +       P  R
Sbjct: 313 APIPAKLVTPLKSHLIWVRERHDEDLAHGFGCVYLPDALARKYPNAEREFRWQFIFPSVR 372

Query: 232 --------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                    IR   ++    QR+I++   + GL    + HTLRHSFATHLL
Sbjct: 373 VSADPRTGEIRRHHIHQSGLQRHIKRSADHCGLYKKVSCHTLRHSFATHLL 423


>gi|293371770|ref|ZP_06618180.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|291516009|emb|CBK65219.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
 gi|292633222|gb|EFF51793.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 411

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 108/291 (37%), Gaps = 27/291 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K TL+ Y    +    FL   Y  + I ++ +     ++   F+  R  +     ++  
Sbjct: 130 AKGTLEKYRIVYKHLQEFLTIRYHVKDIALKELTPAFISDFEMFL--RTDKHCCTNTVWL 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +  +++ +      +  T         +KK  +    L + +   L++  L +   E  
Sbjct: 188 YVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKDEIRLLMEGKLKNAKQE-- 244

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRI-QGKGDKIRIVPLLPSV 206
                   +       GL  ++  +LT +N     D+   + I + K   +  + LL   
Sbjct: 245 ----LYRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRQKTGVVSNIRLLDIA 300

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            + I +Y  LC           +F          G     IR + +  G+    T H  R
Sbjct: 301 NRIIGKYRGLC-------GDGRIFPVPHYNTCLAG-----IRAVAKRCGITKHITWHVAR 348

Query: 267 HSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           H+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +     M  +  +
Sbjct: 349 HTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMENLAAR 399


>gi|228471367|ref|ZP_04056168.1| integrase [Porphyromonas uenonis 60-3]
 gi|228306868|gb|EEK15981.1| integrase [Porphyromonas uenonis 60-3]
          Length = 423

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 114/289 (39%), Gaps = 24/289 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKR 90
           S  TLQ Y+   R+F  FL        +   + +L+Y  I  F    RT       +  +
Sbjct: 139 SAPTLQKYKVCKRRFSEFLKDKLRR--SDLKLTELTYMIIHDFDLYLRTVVGQNPNTATK 196

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           ++   K+ +   +K  +      +N R   +  +    L +++ L +V+  L     E  
Sbjct: 197 TMKTFKTIVILGQKLGVLHHDPFVNFRFHLEPVNR-GFLTDEEVLQIVNKELNIPRLEL- 254

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMD---DQSTLRIQGKGDKIRIVPLLPSVR 207
               R+  I       GL   +  +LTP NI+     +  +  + K      V LL   +
Sbjct: 255 ---VRDIFIFSCF--TGLAYIDVANLTPDNIVMLGGKEWIMTKRQKTSVETNVLLLDIPK 309

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + I +Y      D           G     L+      Y++++    G+  + T H  RH
Sbjct: 310 RIISKYSHQTYRD-----------GKLFPILSNQKTNSYLKEIADICGIKKNLTFHLARH 358

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +FAT  LS G  + S+  +LGH  + TTQIY  + +K     M +  D+
Sbjct: 359 TFATMSLSKGVPIESVSKMLGHTNIRTTQIYARITNKKIEHDMEQFADK 407


>gi|317014808|gb|ADU82244.1| integrase/recombinase (xerD) [Helicobacter pylori Gambia94/24]
          Length = 356

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 122/283 (43%), Gaps = 16/283 (5%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           K T+        Q L     Y ++ + +++ R LS  ++  F+ +   Q     S+ + +
Sbjct: 69  KHTI------MMQGLFLFFNYFKDNLKLRSFRMLSEEQVINFLFEL-AQNRKPSSMAKYV 121

Query: 93  SGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
             ++ F  Y  +KR+   +  + N+   K   SLPR LN+K   + +  +L +    +  
Sbjct: 122 MYLRQFFDYLDRKRRYGFDFTLKNLAFAKTKESLPRHLNDKDLKSFLKTLLDYKPATS-- 179

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKA 209
            + RN  IL ++   GLR  E L++  ++I  ++   ++ IQGKG K R   +  S+ + 
Sbjct: 180 FEKRNKCILLIVILGGLRKCEVLNIELKHIQVEEQNYSILIQGKGRKERKAYIKKSLLEP 239

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL----STTAHTL 265
            L  +    + L       LF+  + K  N      +I  + +   +       T  H  
Sbjct: 240 SLNAWLSDEYRLKYFNGAYLFKKDKQKAQNSLTLYNFIPLIFKLAQIKHYKQYGTGLHLF 299

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           RHSFAT +     DL      LGH  L +T+IY +   ++   
Sbjct: 300 RHSFATLIYQETQDLVLTSMALGHSSLLSTKIYIHTTQEHNKK 342


>gi|227484768|ref|ZP_03915084.1| integrase [Anaerococcus lactolyticus ATCC 51172]
 gi|297587374|ref|ZP_06946019.1| transposase [Finegoldia magna ATCC 53516]
 gi|227237250|gb|EEI87265.1| integrase [Anaerococcus lactolyticus ATCC 51172]
 gi|297575355|gb|EFH94074.1| transposase [Finegoldia magna ATCC 53516]
          Length = 405

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 106/295 (35%), Gaps = 35/295 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +    ++K+  ++I  +  ++ + +  +        +++      +K+      +     
Sbjct: 110 MDILKKDKLGARSIDSIKPSDAKEWAIRMSENGYAYQTINNYKRSLKASFYIAIQDDCVR 169

Query: 110 ESNI-LNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     +  +   +++P+  L  +Q   L+         +     ++N   + +L   G
Sbjct: 170 KNPFDFQLNAVLDDDTVPKTVLTGEQEEKLL------AFAKADKTYSKNYDEILILLKTG 223

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAIL 211
           LRISE   LT  ++  +   + I                       R VP++    +A  
Sbjct: 224 LRISEFGGLTLPDLDFENRLVNIDHQLLRDTEIGYYIETPKTKSGERQVPMVEEAYQAFK 283

Query: 212 EYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTA 262
                   D  + I      LF   +  P     +   ++ L +         LP   T 
Sbjct: 284 RVLANRKNDKRVEIDGYSDFLFLNRKNYPKVASDYNGMMKGLVKKYNKYNDDKLP-HITP 342

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQ 316
           H+LRH+F T+  + G + +++Q I+GH  ++ T   Y +    +    M  +  +
Sbjct: 343 HSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMSEMKRLNKE 397


>gi|317475379|ref|ZP_07934643.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316908407|gb|EFV30097.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 411

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 58/291 (19%), Positives = 108/291 (37%), Gaps = 27/291 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K TL+ Y    +    FL   Y  + I ++ +     ++   F+  R  +     ++  
Sbjct: 130 AKGTLEKYRIVYKHLQEFLDIRYHVKDIALKELTPAFISDFEMFL--RTDKHCCTNTVWL 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +  +++ +      +  T         +KK  +    L +++   L+D  L +   E  
Sbjct: 188 YVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKEEIRLLMDGKLKNAKQE-- 244

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRI-QGKGDKIRIVPLLPSV 206
                   +       GL  S+  +LT +N     D+   + I + K   +  + LL   
Sbjct: 245 ----LYRDLYLFCAFTGLSFSDMRNLTEENIRTYFDEHEWININRQKTGVVSNIRLLDIA 300

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            + I +Y  LC           +F          G     IR + +  G+    T H  R
Sbjct: 301 NRIIGKYRGLC-------EDGRIFPVPHYNTCLAG-----IRAVAKRCGITKHITWHQSR 348

Query: 267 HSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           H+ AT   LSNG  + ++ S+LGH  + TTQIY  +        M  +  +
Sbjct: 349 HTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYAKITKVKLNQDMENLAAR 399


>gi|189460548|ref|ZP_03009333.1| hypothetical protein BACCOP_01189 [Bacteroides coprocola DSM 17136]
 gi|189432792|gb|EDV01777.1| hypothetical protein BACCOP_01189 [Bacteroides coprocola DSM 17136]
          Length = 388

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 56/294 (19%), Positives = 115/294 (39%), Gaps = 30/294 (10%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L++L  ER     T  +++  T +++I    + ++    +  R++  TE         T+
Sbjct: 116 LKHL--ERYCKPNT--TFKDITPEWIIGFREHLDKNARCRDKRKIITTE-------EVTK 164

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +   S     + +++ +    + +I   + +  +   K++ +    L  ++   +    
Sbjct: 165 PLSQNSKVSYFNKLRACINQAFEDRIIPHNPLRGIEGFKQAETERSYLTLEEVKAM---- 220

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
               + + K+   +N+ +   L   GLR S+   L  + +       RI  K  K     
Sbjct: 221 ---AAAQCKYPALKNAFMFSCL--TGLRKSDIEKLRWREVQQQGDFTRIIFKQKKTGGQE 275

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            L   ++A+         D        +F G +            +R      G+    T
Sbjct: 276 YLDINKQAVQYMGVRREPDDR------VFVGFKYSAY----MIAELRMWANRAGITKDIT 325

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            H+ RH+FA  +L  G ++ ++Q +LGH  LSTTQIY  +  K   + +  I D
Sbjct: 326 FHSGRHTFAVLMLDLGAEIYTVQKLLGHKELSTTQIYAKILDKKKQEAVAMIPD 379


>gi|150401987|ref|YP_001329281.1| phage integrase family protein [Methanococcus maripaludis C7]
 gi|159906222|ref|YP_001549884.1| integrase family protein [Methanococcus maripaludis C6]
 gi|150033017|gb|ABR65130.1| phage integrase family protein [Methanococcus maripaludis C7]
 gi|159887715|gb|ABX02652.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 340

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 113/261 (43%), Gaps = 14/261 (5%)

Query: 61  QTIRQLSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           +T   L+  +  AF +  +R +   D ++ +    +K F + +K +   ++  + +    
Sbjct: 82  KTPETLTNRDYMAFFTYVKRERNCSDNTVNKYFKLLKVFYRLMKFKNF-SDFVVESKERK 140

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           + S    +  +     TL + VL+           R++  + LL+  G R+SEA +LT  
Sbjct: 141 RFSRFDIKHYDAIDEDTL-NQVLVKLLKSNSGTKIRDATFIRLLWDTGCRVSEACNLTYS 199

Query: 180 NIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
               ++   ++   K  + R V       K +  +      D + + +  LF+   G  L
Sbjct: 200 ASDLNKGVFKLTHTKTKQDRTVVCSKETLKLLNYFLQ---HDPDNSPEDHLFKSANGAKL 256

Query: 239 NPGV----FQRYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           N       F+  +++L++   +P +     H+LRH  A  LL+ G  +  ++  LGH  +
Sbjct: 257 NKYTLSARFRNIVKELKKDGTVPKNQWLVIHSLRHGRAVDLLNKGVSIDVVKEYLGHASI 316

Query: 293 STTQIYTNVNSKNGGDWMMEI 313
            TT IY++ +++     + +I
Sbjct: 317 ETTLIYSH-STERKNKMLDQI 336


>gi|187928906|ref|YP_001899393.1| integrase family protein [Ralstonia pickettii 12J]
 gi|187725796|gb|ACD26961.1| integrase family protein [Ralstonia pickettii 12J]
          Length = 566

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 58/336 (17%), Positives = 120/336 (35%), Gaps = 61/336 (18%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR------------ 79
           S  T ++Y  +  + +++           + +  L+  +  A+ S  R            
Sbjct: 236 SPATQRAYRKEAERLILWAIIERG-----KPLSSLTTEDAVAYRSFLRRPAPRERWVGPA 290

Query: 80  -----------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
                      T  +   S+  +LS + +  ++L +++    +    ++ ++ +   P  
Sbjct: 291 RPRTSVEWRPLTDGLSAHSIAYALSVLGAMFRWLIQQRYVLANPFAGLK-VRGAIRSPE- 348

Query: 129 LNEKQALTLVDNVLLHT-SHETKWIDARN-------SAILYLLYGCGLRISEALSLTPQN 180
           L    A +  + VL+ T +   +W              +L   Y  GLR SE ++    +
Sbjct: 349 LATSHAFSEGEWVLVRTIADGLEWSYGWAVPAGQRLRFVLDFSYATGLRASELVTSKLGD 408

Query: 181 IMDD---QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR------ 231
           +  D      L + GKG +   V + P  R A+  +       +++    P  R      
Sbjct: 409 LEVDAAGDHWLNLVGKGRRAGKVAVPPLARSALDRHLVERSLPVSVARWNPQVRLIGAVV 468

Query: 232 -----GIRGKPLNPGVFQRYIRQLRRYLGLP--------LSTTAHTLRHSFATHLLSNGG 278
                GI    L   V +R+       +              + H +RH+ ATH L+ G 
Sbjct: 469 GESETGITTARL-WAVVRRFFWTAAEIIEPDHPALAQKLRQASPHWMRHTHATHALARGA 527

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           +L +++  L H  +STT IY + +       +   +
Sbjct: 528 ELTTVRDNLRHASISTTSIYLHGDDVKRARQLTAAF 563


>gi|188534989|ref|YP_001908786.1| Type 1 fimbriae regulatory protein, FimB [Erwinia tasmaniensis
           Et1/99]
 gi|188030031|emb|CAO97916.1| Type 1 fimbriae regulatory protein, FimB [Erwinia tasmaniensis
           Et1/99]
          Length = 186

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 66/179 (36%), Gaps = 6/179 (3%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L   +   L+      T         R+  ++ + +  G R+SE   L   +I  +  
Sbjct: 5   KYLTHDEIQRLLQASREGT------YPVRDECMIKMCFIHGFRVSELCHLRISDISLEDG 58

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            + +      ++    L      +L+ +         +    +F   +G  ++     + 
Sbjct: 59  IIHVNRLKGGLKTTHPLLKSELLLLKKWLKERLLWRGSDTSWIFLSQKGGAMSRQQIYKL 118

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           IR       +P+  + H LRH+    L   G D R IQ  LGH  +  T +YT+ NS  
Sbjct: 119 IRSYGAAAHIPVDLSPHMLRHACGFALADRGADTRLIQDYLGHRNIQHTVLYTSSNSAR 177


>gi|313607900|gb|EFR84054.1| tyrosine recombinase XerD [Listeria monocytogenes FSL F2-208]
          Length = 75

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 4/79 (5%)

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           F + ++ + +  G+    T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT+V 
Sbjct: 1   FWKILKGIAKESGIEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVT 60

Query: 303 SKNGGDWMMEIYDQTHPSI 321
                  + ++Y Q HP  
Sbjct: 61  KLR----LKDVYKQFHPRA 75


>gi|306831363|ref|ZP_07464523.1| phage integrase family site-specific recombinase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|306833459|ref|ZP_07466586.1| phage integrase family site-specific recombinase [Streptococcus
           bovis ATCC 700338]
 gi|325978271|ref|YP_004287987.1| tyrosine recombinase xerS [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|304424229|gb|EFM27368.1| phage integrase family site-specific recombinase [Streptococcus
           bovis ATCC 700338]
 gi|304426599|gb|EFM29711.1| phage integrase family site-specific recombinase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325178199|emb|CBZ48243.1| Tyrosine recombinase xerS [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 356

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 66/360 (18%), Positives = 130/360 (36%), Gaps = 51/360 (14%)

Query: 1   MEGNNLPEIVSFELLKERQNW--LQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEE 56
           M+   L E +  + LKE   W  L   + +     S  TL  Y  + R+F  +L      
Sbjct: 1   MKREKLLEKI--DELKEIMPWYVLDYYQSKLSVPYSFTTLYEYLKEYRRFFEWLLDSGIS 58

Query: 57  KIT------IQTIRQLSYTEIRAFISKRRT----------QKIGDRSLKRSLSGIKSFLK 100
            +T      + T+  LS  ++ +FI   R           Q +   ++ R+LS + S  K
Sbjct: 59  DVTKIADVELTTLEHLSKKDMESFILYLRERPSLNTYSTKQGVSQTTINRTLSALSSLFK 118

Query: 101 YLKKRKITTESNILNMRNL---------------KKSNSLPRALNEKQALTLVDNVLLHT 145
           YL +            RN+               +  N   +     + +  +D +    
Sbjct: 119 YLTEEVEDENGEPYFYRNVMKKIATKKKKETLAARAENIKGKLFLGDETMAFIDYIDTEY 178

Query: 146 SHETKWIDA--------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            ++              R+ A++ LL   G+R+SEA++L  +++  +   + +  KG K 
Sbjct: 179 QNKLSHRALSSFQKNKERDLALIALLLASGVRLSEAVNLDLKDLNLNMMVIEVTRKGGKR 238

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIR---GKPLNPGVFQRYIRQLRRY 253
             V +    +  +  Y  +         Q   LF          ++    ++ + +  + 
Sbjct: 239 DSVNVANFAKPYLEAYLQIRAPRYKAEKQDQALFLTEYRGVPNRIDASSVEKLVAKYSQ- 297

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
               +  T H LRH+ AT L         +   LGH     T +YT++ +    + + ++
Sbjct: 298 -DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL 356


>gi|218128957|ref|ZP_03457761.1| hypothetical protein BACEGG_00530 [Bacteroides eggerthii DSM 20697]
 gi|317477483|ref|ZP_07936709.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|217988920|gb|EEC55237.1| hypothetical protein BACEGG_00530 [Bacteroides eggerthii DSM 20697]
 gi|316906347|gb|EFV28075.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 424

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 55/283 (19%), Positives = 112/283 (39%), Gaps = 18/283 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            ++ +L  E  L   T  +Y    R  L F +    +       + + Y  I  ++   R
Sbjct: 125 QYIDSLREEGKL--GTADAYMSGLRSLLRFCSPRKIK------FKDVDYVFITDYMHYLR 176

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKIT--TESNILNMRNLKKSNSLPRALNEKQALTL 137
            + + + ++   LS  ++     +K+ +    ++   ++  +++  ++ RAL++++   +
Sbjct: 177 ARGVAENTVHMYLSNFRAICNKARKQGVKVGKDNPFADLD-IRRRETVKRALSKEEIALI 235

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGC-GLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
               L       +  D     +    + C G+   + + L   + +   +    + K  +
Sbjct: 236 ASVNLRRHPRLEQARD-----LFMFSFYCRGMSFVDVIHLR-NDWVVKDTIFYARSKTGQ 289

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
              V LLP ++K I +Y    P+                     G+  RY++QL R L +
Sbjct: 290 RLQVGLLPDLQKIIEKYRTDSPYIFPYIDSGSSRSVYTQYRYALGMINRYLKQLGRLLHI 349

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            L  T +  RHS+AT   + G  +  I   LGH    TTQIY 
Sbjct: 350 DLPLTTYVARHSWATIAKNEGIPISLISEGLGHTSEKTTQIYL 392


>gi|255100980|ref|ZP_05329957.1| integrase [Clostridium difficile QCD-63q42]
          Length = 400

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 58/296 (19%), Positives = 112/296 (37%), Gaps = 34/296 (11%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           RQ+L  +     + +  ++I  +  ++ + +  + +   +   S+      +K+      
Sbjct: 111 RQYL--MELLKNDPLGSRSIDSVKPSDAKDWAIRMKGNGVAYSSINNYKRSLKASFYMAI 168

Query: 104 KRKITTESNI-LNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
           +     ++    ++  + ++++ P+ AL E+Q     +  LL    E K        I+ 
Sbjct: 169 EDDYIRKNPFNFDLNTVIENDTKPKEALTEEQ-----EANLLAFVKEDKVYKQYYDEIVI 223

Query: 162 LLYGCGLRISEALSLTPQ------NIMDDQSTLR---------IQGKGDKIRIVPLLPSV 206
           LL G GLRISE   LT +       I  D   LR              + +R +P+   V
Sbjct: 224 LL-GTGLRISELCGLTTKLDMQNRIIDVDHQLLRDSEIGYYIETPKTKNGVRQIPMSEEV 282

Query: 207 RKAILEYYDLCPFDLNL---NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-----L 258
            +A             +     +  LF    G P     +Q  +  L +           
Sbjct: 283 YQAFQRVLKNRQKAEPIVIDGYRNFLFLKKDGFPKVACNYQSMLSSLVKKYNKTHKEALP 342

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
             T HTLRH+F T   + G + +++Q I+GH  ++ T   Y +    +    MM +
Sbjct: 343 HITPHTLRHTFCTRFANAGMNPKALQYIMGHANITMTLNYYAHATFTSAKAEMMRL 398


>gi|218281982|ref|ZP_03488300.1| hypothetical protein EUBIFOR_00869 [Eubacterium biforme DSM 3989]
 gi|218217038|gb|EEC90576.1| hypothetical protein EUBIFOR_00869 [Eubacterium biforme DSM 3989]
          Length = 307

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 109/269 (40%), Gaps = 26/269 (9%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            + +++  +++ F+  +    + +++++  +  +K  LK+  K        I      K+
Sbjct: 44  DLYEVNEEKVQQFVFDKLDAGLSEKTIRDIIIVLKMILKFGIKNGYLEYIQIDAKFPSKQ 103

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
                  L++      +++  L  +   K +       +++    G+RI E   L   ++
Sbjct: 104 EKKELDVLSKADQKKFMEH--LRNNFTFKNLG------IFICLSTGMRIGEICGLRWCDV 155

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR---------- 231
              +  ++++    +I I+       + +L+         ++ +   L +          
Sbjct: 156 DTAEGVIKVRHTLQRIYIIEGETRHTELLLDTPKTANSVRDIPMSSELLKMLKSLNKVVN 215

Query: 232 ------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
                     KP+ P  ++ Y ++L + L +P     H LRHSFAT  + +  D +++  
Sbjct: 216 ENYYVISNDIKPIEPRTYRNYYKKLCKQLDIP-ELKFHGLRHSFATRCIESKADYKTVSV 274

Query: 286 ILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           +LGH  +STT  +Y + N +     + ++
Sbjct: 275 LLGHSNISTTLNLYVHPNKEQKKKTIDKM 303


>gi|167838354|ref|ZP_02465213.1| putative bacteriophage integrase [Burkholderia thailandensis
           MSMB43]
          Length = 284

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 109/262 (41%), Gaps = 17/262 (6%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNIL 114
             + + +R+L   ++R ++S R    + + ++KR L  + + + +++      E  + + 
Sbjct: 32  HFSGRDLRKLKRGDVRRYVSARLADGVCESTVKRELRLLSAAINFVRTEHDYPELANPVQ 91

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           ++  L    S  R ++  +A+ L+       +             + L    G R +E L
Sbjct: 92  SL-GLDGGESRVRWISRSEAVELI------LAAGAAARQPHLRNFVRLALSTGCRKNELL 144

Query: 175 SLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           +L    +  ++S  R+     K  K R+VPL      A+ +         +      +F 
Sbjct: 145 ALEWHRVDFERSHFRLECEHTKNGKRRLVPLNSGALSALRD--QRDWVARHCAGSEWVFA 202

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
              G+ ++    Q+         G+      H LRH+FA+ L+  G  L  ++ +LGH  
Sbjct: 203 SSSGRRVS--NLQKGFVAACARAGIE-DFRIHDLRHTFASWLVMEGVSLYVVKDLLGHSS 259

Query: 292 LSTTQIYTNVNSKNGGDWMMEI 313
           ++ T+ Y +++  +G   + ++
Sbjct: 260 ITVTERYAHLSPDHGRVAVQKL 281


>gi|29293005|gb|AAO73845.1|AF335469_2 FotT [Escherichia coli]
          Length = 191

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 8/182 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L + +   ++      T  +      RN  +LYL +  G R+SE  +L  +++     
Sbjct: 5   KYLTQSEVELML------TEAKHGQFSERNYCLLYLSFIHGFRVSEVCNLRLEDVCLRDK 58

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
           +L I+  K     I PLL    K +  +  +    +N +    LF   +G  L+     +
Sbjct: 59  SLNIRRMKNGFSTIHPLLSDEVKVLKAWLCVRD-KMNGSESEWLFVSRQGGALSRQRVWQ 117

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            I+ L +  G+ +++  H LRH+    L   G D R IQ  LGH  +  T  YT  N++ 
Sbjct: 118 MIQNLGKKAGVKVNSHPHMLRHACGYALADRGVDTRLIQDYLGHRNIRHTVCYTASNAER 177

Query: 306 GG 307
             
Sbjct: 178 FK 179


>gi|289167066|ref|YP_003445333.1| site-specific recombinase, phage integrase family [Streptococcus
           mitis B6]
 gi|288906631|emb|CBJ21465.1| site-specific recombinase, phage integrase family [Streptococcus
           mitis B6]
          Length = 377

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 52/334 (15%), Positives = 122/334 (36%), Gaps = 56/334 (16%)

Query: 12  FELLKERQNWLQNLEIERGLSK-LTLQS-YECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +ELLKE ++ + +    R  S   T  + Y    + +             +  + +L+Y 
Sbjct: 67  YELLKE-EDSINH----RKASYINTQDNNYNKHIKDYFSM----------VDNVGKLTYE 111

Query: 70  EIRAFISKRR-------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +I  F    R        + +   ++ + +  +K       ++   + +    ++ L   
Sbjct: 112 DIYQFREHLRQKVAKNSDKPLSTNTINKIMILLKKIFDVGLRKGYYSSNPAKLIKKLPIE 171

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            +  +    K+    +           +  +     +  +L+  GLR+ EAL+LT Q+I 
Sbjct: 172 KTKMQFWTVKEFQKFLTLF--------EPEEYNIKLLFTVLFFTGLRLGEALALTWQDID 223

Query: 183 DDQSTLRIQG---------------KGDKIRIVPLLPSVRKAILEYYDLCPFDL----NL 223
              +T+ I                      R + +   + + + ++       L    N 
Sbjct: 224 FSSNTIHITKSVYVNKGVTHISTTKTKAGTRRIVINKKLSQELQDWEKQQKHLLEQFTNN 283

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
           ++ L +F+      +     ++  +++            H  RHS A+ L++ G D   +
Sbjct: 284 SLTLQVFQNSPIT-ITKNAVEKQYKKILERDSTLKKIRIHDFRHSHASLLINQGEDYLVV 342

Query: 284 QSILGHFRLSTT-QIYTNV---NSKNGGDWMMEI 313
           +  LGH  ++TT   Y+++     K+  D + E+
Sbjct: 343 KERLGHASITTTIDTYSHLYPSKQKDLADKLDEL 376


>gi|190150796|ref|YP_001969321.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307264085|ref|ZP_07545682.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189915927|gb|ACE62179.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306870563|gb|EFN02310.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 267

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 54/303 (17%), Positives = 115/303 (37%), Gaps = 38/303 (12%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++   Q +L N    + L+K ++ +Y    +QF                + + +  E + 
Sbjct: 1   MIISFQKYLSN----KDLAKNSISAYLFAVKQFYKLY----------PNVTRGNLKEYKV 46

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+  R       +++   L  I  +L+++KK K       L+   +++   L   ++E  
Sbjct: 47  FLIDR----YKPQTVNLRLRAINCYLEFIKKEKWK-----LSFVKVQQKPFLENVISETD 97

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                    L   +E  W       ++  +   G R+SE + +  ++I      L +  K
Sbjct: 98  YYYF--KQKLKEDNELYW-----YFVIRFMAATGSRVSELIQIKVEHINI--GYLDLYSK 148

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K+R + +  ++++    +           I   +F    G+ +        ++ L + 
Sbjct: 149 GGKLRRIYIPQALQQECQIWLKQTN-----KISGFIFLNKYGERITTRGIAGQLKILAKR 203

Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             L P     H+ RH FA   L    D+  +  ++GH  + TT+IY    +      + +
Sbjct: 204 YKLDPKVVYPHSFRHRFAKSFLERFNDIAFLADLMGHESIETTRIYLRKTATEQQAIINK 263

Query: 313 IYD 315
           I D
Sbjct: 264 IID 266


>gi|254261414|ref|ZP_04952468.1| phage integrase family protein [Burkholderia pseudomallei 1710a]
 gi|254220103|gb|EET09487.1| phage integrase family protein [Burkholderia pseudomallei 1710a]
          Length = 565

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 62/339 (18%), Positives = 122/339 (35%), Gaps = 35/339 (10%)

Query: 5   NLPEIVSFE--LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
           +L E V+ +    KE +  +    +ER  +  +L +   D   +  FL   T  +  +  
Sbjct: 228 SLHESVATQRAYRKEAERLILWAIVERNCALSSLTT--DDAIAYRSFLRRPTPRERWVGP 285

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR----N 118
            R     E R F        +  RS   +L+ + +  ++L +++    +    ++     
Sbjct: 286 SRPRHSVEWRPF-----NGALSPRSAAYALNVLSAMFRWLVEQRYVLANPFAGIKVKSHA 340

Query: 119 LKKSNSLPRALNEKQALTL--VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
            +    + R  +E + L +  + + L  +   +     R   +L   Y  GLR SE +  
Sbjct: 341 PRAGLDVSRGFSEGEWLLIRTLADGLEWSYGWSAPAAQRLRFLLDFGYATGLRASELVGA 400

Query: 177 TPQNIMDDQS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLF 230
              +I  D+     L + GKG K+  V L    R A+ +Y       +     N   PL 
Sbjct: 401 KLGDIRRDEHGDHWLHVLGKGGKLGKVALPSLARTALDQYLVQRGLPVTPERWNPATPLV 460

Query: 231 RGIRGK--PLNPGVFQRYIRQLRRYLGLP------------LSTTAHTLRHSFATHLLSN 276
             +      +      R + +                       + H +RH+ A+H L+ 
Sbjct: 461 VSLEEDGARIESTRLWRVLCRFFVLAADTIQDERPATAEKLRCASPHWMRHTHASHALAR 520

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           G +L  ++  L H  +STT  Y + +         + + 
Sbjct: 521 GAELIMVRDNLRHASISTTSTYLHSDEVQRARQFDQAFR 559


>gi|253682989|ref|ZP_04863775.1| XerC/D family recombinase [Clostridium phage D-1873]
 gi|253560818|gb|EES90281.1| XerC/D family recombinase [Clostridium phage D-1873]
          Length = 317

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 123/303 (40%), Gaps = 24/303 (7%)

Query: 13  ELLKERQNWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           E  K+   +L   +I+   R LS+ T+ +YE D   +      Y  +K   Q I +L+  
Sbjct: 18  EFNKDTMKYLNKYKIDMSIRELSEKTIYNYEMDLYNWFT----YILDKQFNQCITELNED 73

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--PR 127
           +I  F+   + Q    R +KR ++ I +F K+L+K++I  E+ +  +   +K   +    
Sbjct: 74  DIMEFLYFCKQQGNNSRRMKRRMASISAFYKFLRKKRIIKENPMEFIDRPRKDTDVVTQT 133

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L + Q   +               D +    + L      R++   ++  + I  +   
Sbjct: 134 FLTKDQVEQI-------KRKLKDHGDIQLETYVLLSLSTMARVNAISNIKWEQIDFENRI 186

Query: 188 L-RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN---PGVF 243
           +  +  K  KI  +     V++ +L+   +     N      +F     K  +       
Sbjct: 187 IGDVLEKEGKIVDLYFNKEVKELLLQLQSIRKE--NNIESEYVFISKYNKGYSNVNTSTL 244

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI-YTNVN 302
            ++ +++   +G+P +   H  RHS AT L + G  +  + S+L H  L  T+  Y   +
Sbjct: 245 SKWTKKVGEMIGVP-TLHCHDWRHSGATLLKNAGMPIERVSSLLHHEGLDVTKKFYIKED 303

Query: 303 SKN 305
           ++ 
Sbjct: 304 TQK 306


>gi|282879690|ref|ZP_06288420.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281306359|gb|EFA98389.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
          Length = 430

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/290 (17%), Positives = 107/290 (36%), Gaps = 15/290 (5%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           R    F+     + I I  I +  + E R F+ KR    +   ++  +L  +   +    
Sbjct: 136 RNLREFVENKGVQDIPIGAITEDLFEEYRFFLKKR---GLKASTVNSNLCWLSRLIFRAV 192

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
            ++I   +   N +  K+   + R L +   + L+   +     E          +    
Sbjct: 193 SKRIIRCNPFENAKYEKEEKKI-RFLQKSDVMKLMAMKMNDREAELA------RLVFVFS 245

Query: 164 YGCGLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
              GL IS+  +L  ++I    + Q  +R + +  K   +  L  + +AI+ +    P  
Sbjct: 246 CFTGLAISDMENLEYKHIQTAAEGQMYIRKERQKTKAEFIVPLHPIAEAIISHCQKEPER 305

Query: 221 LNLNIQLPLFRGIRGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
             +   +             +  V    +  + +  G+    + H  RH+F T  LS G 
Sbjct: 306 SEVQQTVKEKDDHLVFHRNCSRSVMDTKLSIVGKACGIRQRLSFHMARHTFGTMSLSAGI 365

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
            + SI  ++GH  +S+TQ+Y  V      + +  +  +      +  ++ 
Sbjct: 366 PIESIAKMMGHASISSTQVYAQVTDNKISEDIDRLIAKQSAKEKETSERE 415


>gi|265755233|ref|ZP_06090003.1| integrase [Bacteroides sp. 3_1_33FAA]
 gi|263234375|gb|EEZ19965.1| integrase [Bacteroides sp. 3_1_33FAA]
          Length = 411

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 56/292 (19%), Positives = 110/292 (37%), Gaps = 29/292 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K TL  Y    +    FL   Y  + I ++ +     ++   F+  R  +     ++  
Sbjct: 130 AKGTLLKYRTVYKHLQEFLTIRYRVKDIALKELTPAFISDFEMFL--RTDKHCCTNTVWL 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +  +++ +      +  T         +KK  +    L +++   L++  L +   E  
Sbjct: 188 YVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKEEIRLLMEGRLKNAKQE-- 244

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRI-QGKGDKIRIVPLLPSV 206
                   +       GL  ++  +LT +N     D+   + I + K   +  + LL   
Sbjct: 245 ----LYRDLYLFCAFTGLSFADMRNLTEENIHTYFDEHEWININRQKTGVVSNIRLLDIA 300

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           ++ I +Y  LC                R  P+ +       IR + +  G+    T H  
Sbjct: 301 KRIIDKYRGLCG-------------NGRIFPVPHYNTCLAGIRSVAKRCGITKHITWHQS 347

Query: 266 RHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           RH+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +     M  +  +
Sbjct: 348 RHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMENLAAR 399


>gi|15645610|ref|NP_207786.1| integrase/recombinase (xerD) [Helicobacter pylori 26695]
 gi|2314140|gb|AAD08042.1| integrase/recombinase (xerD) [Helicobacter pylori 26695]
          Length = 355

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 123/283 (43%), Gaps = 16/283 (5%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           K T+        Q L     Y ++ + +++ R LS  ++  F+ +   Q     S+ + +
Sbjct: 69  KHTI------MMQGLFLFFNYFKDNLKLRSFRMLSEEQVINFLFEL-AQNRKPSSMAKYV 121

Query: 93  SGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
             ++ F  Y  +KR+ + +  + N+   K   SLPR LN+K   + +  +L +    +  
Sbjct: 122 MYLRQFFDYLDRKRRYSFDFTLKNLAFAKTKESLPRHLNDKDLKSFLKTLLDYKPATS-- 179

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKA 209
            + RN  IL ++   GLR  E L++  ++I  ++   ++ IQGKG K R   +  S+ + 
Sbjct: 180 FEKRNKCILLIVILGGLRKCEVLNIELKHIQVEEQNYSILIQGKGRKERKAYIKKSLLEP 239

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL----STTAHTL 265
            L  +    + L       LF+  + K  N      +I  + +   +       T  H  
Sbjct: 240 SLNAWLSDEYRLKYFNGAYLFKKDKQKAQNSLTLYSFIPLIFKLAQIKHYKQYGTGLHLF 299

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           RHSFAT +     DL      LGH  L +T+IY +   ++   
Sbjct: 300 RHSFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHNKK 342


>gi|227357956|ref|ZP_03842298.1| fimbriae recombinase [Proteus mirabilis ATCC 29906]
 gi|227161691|gb|EEI46723.1| fimbriae recombinase [Proteus mirabilis ATCC 29906]
          Length = 205

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 73/180 (40%), Gaps = 8/180 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L   +   ++         +      R+  +  + +  G R+SE  +LT  +I  +  
Sbjct: 22  KFLTRFEVNAILKQ------AKEGRYPERDYCMFLMCFLHGFRVSELCNLTLSDIDLESR 75

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            L ++  KG      P++    +A+  +          + +  +F   +  P++      
Sbjct: 76  ILYVRRLKGGLSTTQPIIDEEYEALCNWLKSRENWRESDSE-WVFLSQKTGPISRQQVYG 134

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +R+L +   + +S   H LRH+    L   G D R IQ  LGH  +S T IYT  NSK 
Sbjct: 135 LLRRLGKKANVSISPHPHMLRHACGYALADLGRDTRLIQDYLGHRNISHTVIYTASNSKR 194


>gi|225387162|ref|ZP_03756926.1| hypothetical protein CLOSTASPAR_00914 [Clostridium asparagiforme
           DSM 15981]
 gi|225046735|gb|EEG56981.1| hypothetical protein CLOSTASPAR_00914 [Clostridium asparagiforme
           DSM 15981]
          Length = 280

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/299 (15%), Positives = 107/299 (35%), Gaps = 29/299 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +E + + + L+ +RG +  T+ +Y    R +                   ++   ++++ 
Sbjct: 7   EEIETFKEYLK-KRGAAPNTISAYTASVRLYYSLY-------------SDMNIPNLQSYK 52

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                +     ++   + GI     Y++      E  + + R           L     +
Sbjct: 53  EYLL-EHFKANTVNIRIFGINQ---YIETLGGNPEMKLESYRLPSVKRQQKPFL--DNVI 106

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
           +  D   L    +          ++  L   G RISE + +  +++      + +  KG 
Sbjct: 107 SKRDYERLKRCLKRDGNMFW-YFVVRFLAATGARISELVKIKVEHVRI--GCMDLYSKGG 163

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K+R +     +   +L +      D        +F   +G  + P      ++ L     
Sbjct: 164 KLRRIYFPEKLCLEMLSWLAREGRD-----SGFIFVNKKGDQITPRGISSQLKVLAVRYH 218

Query: 256 LPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +P      H+ RH FA + L+   D+  +  ++GH  + TT+IY   +S     ++ +I
Sbjct: 219 IPPETVYPHSFRHRFAKNFLNKFNDISLLADLMGHESIETTRIYLTKSSLEQRKFIDKI 277


>gi|221205056|ref|ZP_03578072.1| site-specific recombinase, phage integrase family [Burkholderia
           multivorans CGD2]
 gi|221174847|gb|EEE07278.1| site-specific recombinase, phage integrase family [Burkholderia
           multivorans CGD2]
          Length = 439

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 63/330 (19%), Positives = 125/330 (37%), Gaps = 42/330 (12%)

Query: 16  KERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           KE +  +    +ERG  LS LT      D   +  F+   T  +  +   R  +  E R 
Sbjct: 118 KEAERLILWAIVERGRALSSLT----TDDAIAYRAFIRRPTPRERWVGPPRPRNSVEWRP 173

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F     +  +  RS   +L+ + +  ++L +++    +    ++   + ++L  AL+  +
Sbjct: 174 F-----SGGLSARSSAYALTVLSALFRWLIEQRYVLANPFAGVKV--RGHALRPALDTTR 226

Query: 134 ALTLVDNVLLHT-SHETKWIDARN-------SAILYLLYGCGLRISEALSLTPQNIMDDQ 185
             +  + +LL T +   +W    +         +L   Y  GLR +E +  T  ++  D+
Sbjct: 227 GFSEGEWLLLRTIADGLEWSYGWSVPAAQRLRFLLDFGYATGLRANELVGATLGDVHVDE 286

Query: 186 S---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL------------- 229
                L + GKG K   V L P  R A+ +        +      P              
Sbjct: 287 RGNQWLHVTGKGGKRARVALPPLARDALDQCLVQRQLSVTPEQWNPRTSLVANLGEDGDA 346

Query: 230 -FRGIRGKPLNPGVFQRYIRQLRRY----LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
              G R   +    F +    ++             + H +RHS A+H L+ G  L +++
Sbjct: 347 GIVGARLWHVMRRFFLQAADIIKSAHPALAEKLQRASPHWMRHSHASHALARGAGLTTVR 406

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
             L H  ++TT +Y + +       + + +
Sbjct: 407 DNLRHASIATTSMYLHGDDILRAREINQAF 436


>gi|153807019|ref|ZP_01959687.1| hypothetical protein BACCAC_01296 [Bacteroides caccae ATCC 43185]
 gi|149130139|gb|EDM21349.1| hypothetical protein BACCAC_01296 [Bacteroides caccae ATCC 43185]
          Length = 307

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 58/293 (19%), Positives = 113/293 (38%), Gaps = 35/293 (11%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           TL +Y+   +  L+                 ++  +++ F+  + T  +  ++++  ++ 
Sbjct: 26  TLCAYQLTLQTHLL---------PRFGAAENITEKDVQQFVIDKCTSGLARKTVRDIVAV 76

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +KS +KY  K  I            +  N LP  L+      L+ ++L   + +      
Sbjct: 77  LKSVIKYGNKHGIFHFEEWEIEYPTQTENKLPPTLSLNHQRILMRHLLEQPTPQNIG--- 133

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA----- 209
                + L    G+RI E  +L  +++   Q T+ +Q    +I    L  + R       
Sbjct: 134 -----VLLALCTGMRIGEVCALKWEDVDFAQKTVIVQHTVGRIYNCELKSTERVHSSPKT 188

Query: 210 --------ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
                   I +        +    Q P   G   +   P  ++ Y  +L + L +P    
Sbjct: 189 KNSCREIPISKQLFQALKMVRKQSQSPYVVGTSIQSKEPRSYRDYFGRLLKRLDIP-HLV 247

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN---SKNGGDWM 310
            H LRH+FAT  + +  D +++  ILGH  ++TT  +Y + N    K   D M
Sbjct: 248 FHGLRHTFATRCIESQCDYKTVSVILGHSNVATTLNLYVHPNLNQKKRCIDRM 300


>gi|227524410|ref|ZP_03954459.1| phage integrase family site specific recombinase [Lactobacillus
           hilgardii ATCC 8290]
 gi|227088641|gb|EEI23953.1| phage integrase family site specific recombinase [Lactobacillus
           hilgardii ATCC 8290]
          Length = 401

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 54/310 (17%), Positives = 112/310 (36%), Gaps = 47/310 (15%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           ++R L   T  +Y     +++I        KI    IR +    ++  ++     K+   
Sbjct: 93  VQRELKPNTQINYLNIINKYII-------PKIGNFRIRSIGPAALQNLVNDLGETKLAKH 145

Query: 87  SLKRSLSGIK-SFLKYLKKRKITTESNILNMRNLK------KSNSLPRALNEKQALTLVD 139
           +++  +  IK  F K +   ++  E     +   K       +    + +   Q   ++ 
Sbjct: 146 TVQIIVMVIKEGFKKAVYPYQLIKEDPARYIIMPKYHDDERITRKKLKIITMNQYEQILS 205

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------- 191
                               L + +G G+R  E   LT  N+  +  T+ ++        
Sbjct: 206 ITPPSNPFYIP---------LQIAFGTGMRRGEVCGLTWTNVDLNGHTIEVKQAMMQESK 256

Query: 192 --------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-----KPL 238
                         R + +  S+   + ++      +     Q               P+
Sbjct: 257 GKFSIVTPKTTSSYRTISIGESLVDLLRQHKKHQMEERLRYGQYYHESNFVCTKENGIPV 316

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-I 297
            P   +    ++++ LG P +   H+LRH+ AT LL +G +++ IQ+ LGH R++TT   
Sbjct: 317 TPNTIKYQCDRIQKELGFPFN--FHSLRHTHATMLLEHGANIKDIQARLGHSRIATTMDT 374

Query: 298 YTNVNSKNGG 307
           Y++V  K   
Sbjct: 375 YSHVTHKMQR 384


>gi|255690845|ref|ZP_05414520.1| site-specific recombinase, phage integrase family [Bacteroides
           finegoldii DSM 17565]
 gi|260623574|gb|EEX46445.1| site-specific recombinase, phage integrase family [Bacteroides
           finegoldii DSM 17565]
          Length = 267

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 110/301 (36%), Gaps = 38/301 (12%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++++ + +L+    +  ++  T+ +Y+     F              + + + +    + 
Sbjct: 1   MVEKFETFLR----QGNMADNTISAYQYAVNDFYSRH----------KDLNKRNLLLYKT 46

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++     +    +++   +  +  +L ++ K ++        ++++K         +  +
Sbjct: 47  YLI----ETFKPKTVNLRIQALNKYLDFVNKTRL-------RLKSVKVQQR-----SYLE 90

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
            +    + +   +   K  +     ++  L   G R+SE + +  +++        I  K
Sbjct: 91  NVISNADYIFLKNKLKKEENQEWYFVVRFLAATGARVSELIQIKIEHVNI--GYFDIYTK 148

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G KIR + +   +R     +      +        LF    G+ +      + ++     
Sbjct: 149 GGKIRRLFIPKKLRDETKVWLIAINRE-----SGYLFLNRFGERITTRGISQQLKNYAEK 203

Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             L       H+ RH FA + L    D+  +  ++GH  + TT+IY    +    + + +
Sbjct: 204 YELNTKVVYPHSFRHRFAKNFLEKFNDISLLADLMGHESIETTRIYLRRTALEQQEIVDK 263

Query: 313 I 313
           +
Sbjct: 264 V 264


>gi|150010411|ref|YP_001305154.1| transposase [Parabacteroides distasonis ATCC 8503]
 gi|149938835|gb|ABR45532.1| transposase [Parabacteroides distasonis ATCC 8503]
          Length = 411

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 53/298 (17%), Positives = 114/298 (38%), Gaps = 30/298 (10%)

Query: 31  LSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSL 88
            S +T+  Y+   ++   F+ ++Y +E++T     +L+   I AF    +T+  +   ++
Sbjct: 129 YSPVTINRYKNVVKKLQQFIPSYYGKEEVTFH---ELTPEFIHAFDIYLKTEGRLCRNTI 185

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R +   K F      ++   ++     + +++  + P  L   +   ++         E
Sbjct: 186 VRYMKCFKKFTNMALAKEWMRKNPFYGYK-MEQDETDPVFLTYDELQAVMKKKFTIPRLE 244

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLT--------PQNIMDDQSTLRIQGKGDKIRIV 200
                     I       GL  S+  SL           +    +  ++++ +     I 
Sbjct: 245 LV------RDIFVFACFTGLAFSDVASLNNEHLVQDNLGDWWIRKGRVKLERRRKASSIS 298

Query: 201 PLLP-SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
            +    V  AILE Y   P  +     LP+    +           Y++++  + G+  +
Sbjct: 299 NIPLLPVPLAILEKYREHPACIKKGCCLPVMCNQKM--------NSYLKEIADFCGIKKN 350

Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            T H  RH+F T + L+N   L+ +  +LGH     TQ Y  V + +    M  + ++
Sbjct: 351 LTTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKAAMNNVKER 408


>gi|298243894|ref|ZP_06967701.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297556948|gb|EFH90812.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 385

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 62/314 (19%), Positives = 114/314 (36%), Gaps = 43/314 (13%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            WL+ +      +  T  SY     + LI        +I    IR L+   I+   +K+ 
Sbjct: 72  EWLETVCKPPYRAPQTYISYRSVISKHLI-------PEIGHLKIRNLTARHIQNLYTKKI 124

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +     ++++    +   L    + ++ + +    +  LK        L E++A  L++
Sbjct: 125 REGAKPATIEQMQKVLSGSLNSALQWEMVSTNVASKITTLKGEQREILPLTEEEAKVLLE 184

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------- 191
               H              ++ L    GLR+ E  +L  +NI  D  TL ++        
Sbjct: 185 TARGHRLEG----------MILLGVTLGLRLGEITALKWKNIDLDAHTLTVKLTVSHVPS 234

Query: 192 --------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLN--------LNIQLPLFRGIRG 235
                         R + L  +V + + ++YD    +           N +  +F   R 
Sbjct: 235 MSHVEKDPKTRASRRKIDLPNAVVQTLRQHYDEQKAEAEKMGLSLSEWNPKGLVFLNKRR 294

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             +  G  ++    +    GLP     H LRHS AT LL  G   + +Q +LGH  +  T
Sbjct: 295 GYMYAGQTRKEFYAILAQAGLPK-MHFHDLRHSAATILLVKGVHPKMVQELLGHSSIVMT 353

Query: 296 Q-IYTNVNSKNGGD 308
             IY++V      +
Sbjct: 354 MNIYSHVMPSMRKE 367


>gi|154795716|gb|ABS86842.1| integrase/recombinase [Helicobacter cetorum]
          Length = 355

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 68/283 (24%), Positives = 121/283 (42%), Gaps = 16/283 (5%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           K T+        Q L     Y +  + +++ R LS  ++  F+     Q     S+ + +
Sbjct: 69  KHTI------MMQGLFLFFDYFKNNLKLRSFRMLSEEQVINFLFNL-AQNRKPSSMAKYV 121

Query: 93  SGIKSFLKYLKKRKITTESNIL-NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
             ++ F  YL ++K  +   +L N+   K   SLPR LN+K   + +  +L +    T  
Sbjct: 122 MYLRQFFDYLDRKKRYSFDFMLKNLAFAKTKESLPRHLNDKDLKSFLKTLLEYKP--TTS 179

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKA 209
            + RN  +L ++   GLR  E L++  ++I  ++   ++ IQGKG K R   +  S+ + 
Sbjct: 180 HEKRNKCVLLIVILGGLRKCEVLNIELKHIQVEEQNYSILIQGKGRKERKAYIKKSLLEP 239

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL----STTAHTL 265
            L  +    + L       LF+  + K  N      +I  + +   +       T  H  
Sbjct: 240 SLNAWLSDDYRLKYFNGAYLFKKDKQKAQNSLTLYNFIPLIFKLAQIKHYKQYGTGLHLF 299

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           RHSFAT +     DL      LGH  L +T+IY +   ++   
Sbjct: 300 RHSFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHNKK 342


>gi|38234512|ref|NP_940279.1| integrase [Corynebacterium diphtheriae NCTC 13129]
 gi|38200775|emb|CAE50479.1| integrase [Corynebacterium diphtheriae]
          Length = 221

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 95/239 (39%), Gaps = 28/239 (11%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
             T+ ++ GKG K R + L  S+  ++ E         +        R    + L    
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRGLCCKDWRQSEVGCRSAPIRRLLRNG 220


>gi|288556894|ref|YP_003428829.1| hypothetical protein BpOF4_19490 [Bacillus pseudofirmus OF4]
 gi|288548054|gb|ADC51937.1| hypothetical protein BpOF4_19490 [Bacillus pseudofirmus OF4]
          Length = 329

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 69/320 (21%), Positives = 127/320 (39%), Gaps = 28/320 (8%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR- 78
           ++L +L  E+G  + T++ Y  D   FL ++  +  + +TI+    LS  E+  F  +  
Sbjct: 11  DYLDSL-YEKGRKEATIKRYRYDLLDFLEWMKDHN-KPLTIEGFDSLSIDEMALFFDELI 68

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPRALNEKQAL 135
           + +    R+ +R  S I+   ++  K+       IL        +        ++  +A 
Sbjct: 69  KHRSYKIRTTRRIYSVIQQLARFYIKKGQLQTHAILFYTQPELIQTPLQRKEWVSSAEAD 128

Query: 136 TLV------DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            L       + +  +       + ARN  +L+LL   G  + EA SLT ++I  +++ +R
Sbjct: 129 QLFSVVRSYEGLSENQMRARPLLIARNECLLHLLLHYGCSLHEAASLTTRDIRFERNEIR 188

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN--IQLPLFRGIRGKP---------- 237
           +Q +    RIVP+    ++    Y    P  +        P F     +           
Sbjct: 189 VQSEKGISRIVPITHEHKQLAYNYLKTIPEAVRPKLFSDEPFFVAFDFQRGTFRWSYEED 248

Query: 238 ----LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
               L     Q+ IRQ     GL    +A  LRH++    L NG D  S+Q  L    L 
Sbjct: 249 QPKQLTIISIQKMIRQEVERAGLRKGISAQHLRHTYILRKLLNGDDAISLQQQLSFKSLL 308

Query: 294 TTQIYTNVNSKNGGDWMMEI 313
           + + YT   ++   +   E+
Sbjct: 309 SLKRYTLTINQLTEEQKREL 328


>gi|258515095|ref|YP_003191317.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257778800|gb|ACV62694.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 370

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 107/269 (39%), Gaps = 28/269 (10%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           + +I+ +R ++  ++  F      Q+    ++K  L+ +K F ++L +     ++ + ++
Sbjct: 117 EYSIEALRGITELDVADF-KHWAIQQYQPGTVKVMLTQLKVFYRWLSEAGQIPDNPVTSV 175

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           + +      P+ L   +   L+  V  H        + R   ++ L+   GLR+ E   L
Sbjct: 176 KTVTVVKQAPKWLTRNEQNLLIRAVRKHG-------NLRELTLITLMLHTGLRVQEVADL 228

Query: 177 TPQN--IMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
              +  I + +  + ++ GK  + R VPL    R+ +  Y        +      LF   
Sbjct: 229 RLADIEICERKGKVTVRNGKHSRRREVPLNIDTRQLLKRYLQ------DNPDLEYLFPNK 282

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF--- 290
            G  +     Q  I + ++   +     AH+LRH+F   L+S    L  +  + GH    
Sbjct: 283 TGGRITTRSLQSIIEKYKKLTNIQ-HLNAHSLRHTFCHELVSRKIPLDVVARLAGHVKND 341

Query: 291 ---RLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               +  T  YT    + G D +    D+
Sbjct: 342 GTPNIQQTLTYT----QPGEDDLQRAVDE 366


>gi|80159790|ref|YP_398534.1| XerC/D family recombinase [Clostridium phage c-st]
 gi|78675380|dbj|BAE47802.1| XerC/D family recombinase [Clostridium phage c-st]
          Length = 317

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 61/303 (20%), Positives = 125/303 (41%), Gaps = 24/303 (7%)

Query: 13  ELLKERQNWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           E  K+   +L   +I+   R LS+ T+ +YE D   +      Y  +K   Q I +L+  
Sbjct: 18  EFNKDTMKYLNKYKIDMSIRELSEKTIYNYEMDLYNWFT----YILDKQFNQCITELNED 73

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--PR 127
           +I  F+   + Q    R +KR ++ I +F K+L+K++I  E+ +  +   +K   +    
Sbjct: 74  DIMEFLYFCKQQGNNSRRMKRRMASISAFYKFLRKKRIIKENPMEFIDRPRKDTDVVTQT 133

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L + Q   +   +  H        D +    + L      R++   ++  + I  +   
Sbjct: 134 FLTKDQVEQIKRKLKEHG-------DIQLETYVLLSLSTMARVNAISNIKWEQIDFENRI 186

Query: 188 LR-IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN---PGVF 243
           +  +  K  KI  +     V++ +L+   +     N      +F     K  +       
Sbjct: 187 ISDVLEKEGKIVDLYFNKEVKELLLQLQSIRKE--NNIDSEYVFISKYNKGYSNVNTSTL 244

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI-YTNVN 302
            ++ +++   +G+P +   H  RHS AT L + G  +  + S+L H  L  T+  Y   +
Sbjct: 245 SKWTKKVGEMIGVP-TLHCHDWRHSGATLLKNAGMPIERVSSLLHHEGLDVTKKFYIKED 303

Query: 303 SKN 305
           ++ 
Sbjct: 304 TQK 306


>gi|313889368|ref|ZP_07823016.1| site-specific tyrosine recombinase XerS [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313122200|gb|EFR45291.1| site-specific tyrosine recombinase XerS [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 356

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 57/326 (17%), Positives = 119/326 (36%), Gaps = 45/326 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEK------ITIQTIRQLSYTEIRAFISKRRT---- 80
            S  TL  Y  + ++F  +L             I + T+ QLS  ++ +F+   R     
Sbjct: 33  YSFTTLYEYLKEYKRFFDWLMDSGISDVPRIADIELHTLEQLSKKDMESFVLYLRERPSL 92

Query: 81  ------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--------------- 119
                 + +   ++ R+LS + S  KYL +     +      RN+               
Sbjct: 93  NTYSTKEGVSQTTINRTLSALSSLFKYLTEEVENDQGEPYFYRNVMKKVATKKKKETLAS 152

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHET--------KWIDARNSAILYLLYGCGLRIS 171
           +  N   +     + +  +D +     ++         +    R+ A++ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGDETMEFLDYIDCDYENKLSNRAKSSFRKNKERDLALIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           EA++L  +++  +   + +  KG K   V +    +  +  Y  +         Q   F 
Sbjct: 213 EAVNLDLKDVNLNMMVIEVIRKGGKRDSVNVATFAKSYLESYLAIRQKRYKAEKQDTAFF 272

Query: 232 ----GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
               G     ++    ++ + +  +   +    T H LRH+ AT L         +   L
Sbjct: 273 LTEYGGVPNRIDASSVEKMVAKYSQDFKI--RVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GH     T +YT++ +    D + ++
Sbjct: 331 GHASTQVTDLYTHIVNDEQKDALDKL 356


>gi|257784351|ref|YP_003179568.1| integrase family protein [Atopobium parvulum DSM 20469]
 gi|257472858|gb|ACV50977.1| integrase family protein [Atopobium parvulum DSM 20469]
          Length = 403

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 57/327 (17%), Positives = 122/327 (37%), Gaps = 44/327 (13%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           N+ ++L   + + + T  SY+ + R   +F           + +++++ T++  ++S   
Sbjct: 80  NYFKSLVATQQIERRTYTSYKNNVRYIDLFFGE--------KRLQEITVTDVELYVSWLY 131

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  ++K++ +  ++  ++    +         ++  K   + P  LNE     L  
Sbjct: 132 DSGYAANTVKKAFNSFRACTRHAVAIRDLQYDPCAAIKAPKGYLAPPNPLNEPSRKKL-- 189

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD---------------D 184
            V+L     +  + A      YL Y  G+R  E   L  +++                 D
Sbjct: 190 QVMLSALELSPMVLAT-----YLAYYTGMRREECCGLQWKDVKFKAEDVTAHLCRAISYD 244

Query: 185 QSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFD-----LNLNIQLPLFRGIRGKPL 238
                I+G K  K R VP+   +   + ++      D     +  + ++ +     G+ L
Sbjct: 245 GGKTYIKGLKNGKDRTVPIPAPLVDILKQWRSKYIEDCMLMGIAFSEEMYVLGDFSGEYL 304

Query: 239 NPGVFQRYIRQLRRYLGL----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            P     + +      GL          H LRH++AT  +    D++S Q ILGH  ++ 
Sbjct: 305 RPERATAWWKSHSEEWGLLGTQGRRPVFHDLRHTYATIAVR-TMDIKSAQDILGHSDINM 363

Query: 295 TQIYTNVNSKNGGDW---MMEIYDQTH 318
           T  Y + + +        + E  +  H
Sbjct: 364 TMRYADTDLEQIQKAGKIIGEALNDAH 390


>gi|71904451|ref|YP_281254.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes MGAS6180]
 gi|94991383|ref|YP_599483.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS10270]
 gi|71803546|gb|AAX72899.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes MGAS6180]
 gi|94544891|gb|ABF34939.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS10270]
          Length = 387

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 55/318 (17%), Positives = 128/318 (40%), Gaps = 35/318 (11%)

Query: 22  LQNLEIERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           L +L +E    KLT++  +Y+    +    L  +    +    + +++ ++I+  I++  
Sbjct: 79  LSHLWLETY--KLTVKPQTYDATVTR----LNRHIMPTLGNMKVDKITASDIQMLINRLS 132

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK---SNSLPRALNEKQALT 136
              +   +++   S I+  L+      +   ++  ++   +K   +    + ++     +
Sbjct: 133 KYYVNYTAVR---SVIRKVLQQGVLLGLIDYNSARDIILPRKQPNAKKKVKFIDPSDLKS 189

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
            +++  L TS   ++    ++ +  LL   GLRI EA +L   +I  +  T+ I    +K
Sbjct: 190 FLEH--LETSQHKRYNLYFDAVLYQLLLSTGLRIGEACALEWGDIDLENGTIAINKTYNK 247

Query: 197 I-------------RIVPLLPSVRKAILEYYDLCPFDLN---LNIQLPLFRGIRGKPLNP 240
                         R++ +     +++  Y        N     +   +F     K  N 
Sbjct: 248 NLKFLSTAKTQSGNRVISVDKKTLRSLKLYQMRQRQLFNEVGARVSEVVFATPTRKYFNA 307

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYT 299
            V Q  +    +  G+    T H  RH+ A+ LL+ G   + +Q  LGH  +S T   Y 
Sbjct: 308 SVRQSALDTRCKEAGIER-FTFHAFRHTHASLLLNAGISYKELQYRLGHANISMTLDTYG 366

Query: 300 NVNSKNGGDWMMEIYDQT 317
           +++     + ++  Y++ 
Sbjct: 367 HLSKDKEKEAVL-YYEKA 383


>gi|15675872|ref|NP_270046.1| putative integrase [Streptococcus pyogenes M1 GAS]
 gi|13623107|gb|AAK34767.1| putative integrase - phage associated [Streptococcus pyogenes M1
           GAS]
          Length = 381

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 55/318 (17%), Positives = 128/318 (40%), Gaps = 35/318 (11%)

Query: 22  LQNLEIERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           L +L +E    KLT++  +Y+    +    L  +    +    + +++ ++I+  I++  
Sbjct: 73  LSHLWLETY--KLTVKPQTYDATVTR----LNRHIMPTLGNMKVDKITASDIQMLINRLS 126

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK---SNSLPRALNEKQALT 136
              +   +++   S I+  L+      +   ++  ++   +K   +    + ++     +
Sbjct: 127 KYYVNYTAVR---SVIRKVLQQGVLLGLIDYNSARDIILPRKQPNAKKKVKFIDPSDLKS 183

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
            +++  L TS   ++    ++ +  LL   GLRI EA +L   +I  +  T+ I    +K
Sbjct: 184 FLEH--LETSQHKRYNLYFDAVLYQLLLSTGLRIGEACALEWGDIDLENGTIAINKTYNK 241

Query: 197 I-------------RIVPLLPSVRKAILEYYDLCPFDLN---LNIQLPLFRGIRGKPLNP 240
                         R++ +     +++  Y        N     +   +F     K  N 
Sbjct: 242 NLKFLSTAKTQSGNRVISVDKKTLRSLKLYQMRQRQLFNEVGARVSEVVFATPTRKYFNA 301

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYT 299
            V Q  +    +  G+    T H  RH+ A+ LL+ G   + +Q  LGH  +S T   Y 
Sbjct: 302 SVRQSALDTRCKEAGIER-FTFHAFRHTHASLLLNAGISYKELQYRLGHANISMTLDTYG 360

Query: 300 NVNSKNGGDWMMEIYDQT 317
           +++     + ++  Y++ 
Sbjct: 361 HLSKGKEKEAVL-YYEKA 377


>gi|306818222|ref|ZP_07451953.1| phage integrase [Mobiluncus mulieris ATCC 35239]
 gi|304649186|gb|EFM46480.1| phage integrase [Mobiluncus mulieris ATCC 35239]
          Length = 266

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 59/283 (20%), Positives = 109/283 (38%), Gaps = 43/283 (15%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L++L+   G S  T++ +      ++  LA              ++   +  ++S+  
Sbjct: 13  AYLRHLKAA-GRSPGTIRIHRY----YMGLLAGIAP------CPAHVTTERLEVWLSEHD 61

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q    RS +   S   +F KYL + +I  +   L +  +   + +PR   E        
Sbjct: 62  WQPETRRSAQGVAS---TFFKYLVREEIVKKDPTLGLAPVHVPDGVPRPAPEAAVR---- 114

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           + L +    T       + ++     CGLR  E   L   +   +   LR++GKG ++RI
Sbjct: 115 HALANAPDRT-------ALMVRFAAFCGLRACEIAKLRGSDWDGE--LLRVKGKGGRVRI 165

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +P+        LE                LF G     L+     + + +      LP  
Sbjct: 166 IPVQDRTLIYHLEQCP-----------GWLFPGRIDGHLSAQYTAKLLGEY-----LPAG 209

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            T H LRH F T       DL ++ +++GH +  TT+ Y  ++
Sbjct: 210 VTGHALRHRFGTVAYRATHDLLAVGAVMGHAKTDTTKRYIQLD 252


>gi|300723961|ref|YP_003713274.1| integrase [Xenorhabdus nematophila ATCC 19061]
 gi|297630491|emb|CBJ91156.1| Integrase [Xenorhabdus nematophila ATCC 19061]
          Length = 337

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 97/257 (37%), Gaps = 32/257 (12%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNIL 114
             +    + QL+   +  + S+R  + I   ++ R ++ +           + T    I 
Sbjct: 91  RDMGDPAVYQLTPRFLSEYRSQRLYEGIKASAINRDMAMLSGIFTVLTDIMEYTGTHPIK 150

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           +++ LK        L E +   L++ V                 +  L    G R  EA 
Sbjct: 151 SIKPLKIKKPEMSYLTEPEIADLLNAVTDDAWR-----------LTVLCLNTGARWGEAN 199

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
            L  +N++ ++ T   + K  K R +P+   V K +        FD+N N          
Sbjct: 200 KLRAENMLHNRVTFT-ETKNGKHRTIPISDEVMKVVKTKSSGALFDVNYN---------- 248

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
                   +   ++++   L LP     H LRH+FA H + NGG++ ++Q I+GH  +  
Sbjct: 249 -------SYANILKKV--KLDLPQGQAVHVLRHTFAAHFMMNGGNILTLQKIMGHANIQQ 299

Query: 295 TQIYTNVNSKNGGDWMM 311
           T  Y +       D + 
Sbjct: 300 TMAYAHFAPDYLQDAIK 316


>gi|134045675|ref|YP_001097161.1| phage integrase family protein [Methanococcus maripaludis C5]
 gi|132663300|gb|ABO34946.1| phage integrase family protein [Methanococcus maripaludis C5]
          Length = 321

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 56/294 (19%), Positives = 117/294 (39%), Gaps = 23/294 (7%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSL 88
           GL + T+++     + +L ++ +        +T+      +  AF +  R  +K  D ++
Sbjct: 37  GLKERTIKNDSQRLKVYLNYIYYTLN-----KTVDTTDNKDYVAFFNHLRHDRKCKDTTI 91

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN--EKQALTLVDNVLLHTS 146
            +    +  F + +K +    +  + +    + +    R  +  +++ L ++   L+   
Sbjct: 92  NKYFKLLTVFYRIMKYKNF-NDFLVESKERKRFTKHEIRHYDAIDEETLNMILEKLIGMK 150

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205
             TK    R++  L LL+  G R+SE   LT       +   ++   K  + R V     
Sbjct: 151 GSTK---IRDATFLRLLWDTGCRVSEVAELTYSACDLKKGVFKLTNTKTKRERTVVCSKE 207

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV----FQRYIRQLRRYLGLP--LS 259
             K +  Y        +      LF+      +N       F   + +L+R   +P    
Sbjct: 208 TLKLLNYYLQ---HQGDQGPDDYLFKSAYDGIINKRQLGEKFVGIVNELKREGSVPENKW 264

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              H+LRH  A +LL  G  L  ++  LGH  + TT IY++ +++     + +I
Sbjct: 265 LVLHSLRHGRAVNLLDKGVPLDVVKEYLGHTSIETTMIYSH-STERKNKMLDKI 317


>gi|313159042|gb|EFR58417.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 423

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 99/282 (35%), Gaps = 19/282 (6%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
             D   F+     Y  + I +  + Q    +  A++  +  + + D ++   +  +K  +
Sbjct: 140 RRDLSLFI--CQDYKVKDIPLVELDQSFAEKFAAYL--KHVKGLADTTISVEIKSLKHIV 195

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           K         ++                 L E++   L+   +     +          +
Sbjct: 196 KKAFNDGQMEKNPFAYYYYF-ADQPEIEYLTEEEINKLIIGKVKQQRQDRT------RDM 248

Query: 160 LYLLYGCGLRISEALSL---TPQNIMDDQSTLR-IQGKGDKIRIVPLLPSVRKAILEYYD 215
                  GL  ++   L     +   +    +  I+ K      V LLP  +  + +Y  
Sbjct: 249 FLFCCFTGLSYADLAKLSYEELKQTPNGAWWISSIRQKTKVPFTVKLLPVAKAILEKYRI 308

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
                   N   P   G      +       ++ + R  G+  +   HT RH+FAT + L
Sbjct: 309 PANR---FNRLFPENPGKVFPVASLKSSDASLKHIARQCGIAKNLKFHTARHTFATTVSL 365

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            NG  L ++  +LGH   +TTQIY  V ++  G+ +  I D+
Sbjct: 366 MNGIPLETVSKMLGHKYTTTTQIYAKVTNQMIGNAISRIEDK 407


>gi|189459809|ref|ZP_03008594.1| hypothetical protein BACCOP_00438 [Bacteroides coprocola DSM 17136]
 gi|189433419|gb|EDV02404.1| hypothetical protein BACCOP_00438 [Bacteroides coprocola DSM 17136]
          Length = 413

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 59/292 (20%), Positives = 113/292 (38%), Gaps = 30/292 (10%)

Query: 31  LSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSL 88
            S +T+  Y+   R+   F+  FY ++ IT     +LS   I+AF    +T+  +   ++
Sbjct: 131 YSPVTINRYKNVLRKLETFVPCFYEKDDITFH---ELSPDFIKAFDVFLKTEAGLCRNTI 187

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R +  +K        ++   +      + +++  + P  L   +   +++        E
Sbjct: 188 VRYMKCLKKITNMAIAKEWMRKDPFYGYK-MEQDETDPVFLTNNELQAIMNREFDIPRLE 246

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
                     I       GL  ++  +L P+++  D +      KG          S   
Sbjct: 247 LV------KDIFLFACFTGLAFADVSTLRPEHLEQDNNGDWWIRKGRVKLERRRKSSSIA 300

Query: 209 ---------AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
                    AIL+ Y+  P  L     LP+    +           Y++++  + G+  +
Sbjct: 301 NVPLLPVPLAILKKYESHPICLKQGTCLPVVCNQKA--------NSYLKEIADFCGIKKN 352

Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            T H  RH+FAT + L+N   L+ + ++LGH     TQ Y  V  +N  D M
Sbjct: 353 LTTHAARHTFATTVTLANNVPLQEVSAMLGHASTRMTQHYARVMDRNLKDNM 404


>gi|158522719|ref|YP_001530589.1| integrase family protein [Desulfococcus oleovorans Hxd3]
 gi|158511545|gb|ABW68512.1| integrase family protein [Desulfococcus oleovorans Hxd3]
          Length = 210

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 9/192 (4%)

Query: 127 RALNEKQALTL---VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           +   E Q   L   V +  +    +      R   ++ L+   GLR+ E  +L   ++  
Sbjct: 16  KYFTEAQVRLLRRTVKDKAVADQSKKNKTGIREWMVIDLITSTGLRVEEVSNLRCGDLKA 75

Query: 184 DQSTLRI---QGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLN 239
                 +   +GKG + R V +  S++  + +Y          +     LF G RG P  
Sbjct: 76  GYGQCEVFVSRGKGGRSRTVEIPQSLKTHLNQYLKWKKEQQERIGPSNYLFVGQRG-PWT 134

Query: 240 PGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
               Q+ +++  + LGL     + H LRHS+A  L     DLR++Q  LGH  + TTQIY
Sbjct: 135 AQAIQQLVKKYLKKLGLYERGKSVHALRHSYAVQLYRKKRDLRAVQKQLGHASIQTTQIY 194

Query: 299 TNVNSKNGGDWM 310
            +V  ++    +
Sbjct: 195 ADVTKEDIQQQI 206


>gi|255029932|ref|ZP_05301883.1| Tn554-related, transposase A [Listeria monocytogenes LO28]
          Length = 366

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 136/356 (38%), Gaps = 58/356 (16%)

Query: 16  KERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           K  Q  LQ ++       S  T ++Y    R + +FL+      +T  +    +   I  
Sbjct: 23  KPIQPVLQYMKYLDNTQKSPNTQRTYCYALRDYFVFLS------LTETSYELANIKTIAN 76

Query: 74  FISKR-------RTQKI------GDRSLKRSLSGIKSFLKYLKKRKITTESNI----LNM 116
           F+S         R Q +       ++++   ++ + SF K+L + +           +++
Sbjct: 77  FLSWLVNPTLIERVQHLIPPTLKSEKTVNLKVTAVLSFYKFLYQFEHIEYDVAQRAYVDV 136

Query: 117 RNLKKSN----SLPRALNEKQALTLVDNVLLHTSHETKWI---------DARNSAILYLL 163
           + +K+       + +     +++  +            +          + R+  +L LL
Sbjct: 137 KGIKQYKGFLHHITKNKRVSESILKLKEPKSRVETIPDFTLQAALGATTNVRDFFLLRLL 196

Query: 164 YGCGLRISEALSLTPQNIMDD-QSTLRIQ-----------GKGDKIRIVPLLPSVRKAIL 211
           Y  GLRI E LSL  ++I+ D     R++            +   +R V +  ++     
Sbjct: 197 YETGLRIGEILSLHKEDILFDLHQGHRVRLVYRKEQPNDSRQKTGLREVHISANLIDLFD 256

Query: 212 EY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           +Y Y +  FD + ++ + +    +G PLN        +++     +      H  RH+ A
Sbjct: 257 DYMYSILDFDRSDSLFVKVKGKSQGLPLNYQDVMATFKRI--EGKIEYHLHPHLYRHTHA 314

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           T       D++ +Q  LGH  + TT  +Y +   K     +   +++  P+   ++
Sbjct: 315 TKYYEQTKDIKIVQERLGHKHIQTTMNLYLHPTDKE----IRAQWEKASPAFRMEE 366


>gi|257064113|ref|YP_003143785.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
 gi|256791766|gb|ACV22436.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
          Length = 451

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 60/333 (18%), Positives = 120/333 (36%), Gaps = 49/333 (14%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + WL+  +    +S+ T+++Y    +    ++      K+T   I        RA+   
Sbjct: 80  IETWLEARQTTGKVSEFTIKNYHARLKTIEPYIGKKKLNKVTAAEIE-------RAYAQL 132

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +  + + D +L +    +KS  +      +   +    + +        ++L +++  TL
Sbjct: 133 KAKKSLSDTTLNKLHILLKSVFEKACDYDLILRNPCNKVESPSVDKPDRKSLTQEEGATL 192

Query: 138 VDNVLLHTSHETKWIDARNSAIL-----------------------YLLYGCGLRISEAL 174
           +  + L  +   + +D +    +                        +    GL   E  
Sbjct: 193 LHKLDLEEARIIQEMDEKEERQVKKGNQFGRSSIRGLANLGFTIGTRIALATGLHRGEVF 252

Query: 175 SLTPQNIMDDQSTLRI------------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDL- 221
            LT +N+   Q+T+ +               G   R + +  S    +  +      +L 
Sbjct: 253 GLTWKNVNLRQNTITVAQTLTKEGEIKDPKTGAGRRTISIDESTAAHLRMWRKRQREELA 312

Query: 222 ----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
                L    P+    RG+ +N   F+R+ R  R   G       H LRHS AT LL+NG
Sbjct: 313 KLAIKLGDATPVCCSERGEWVNLANFERWWRSFRDDAGFE-GLRFHELRHSQATLLLANG 371

Query: 278 GDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDW 309
            DL+++Q  +GH   + T   Y +   +N    
Sbjct: 372 TDLKTVQDRMGHANGAITLNWYAHAIPENDQKA 404


>gi|254450297|ref|ZP_05063734.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264703|gb|EDY88973.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 258

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 94/259 (36%), Gaps = 37/259 (14%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
            +++    + F  FL          ++    +  ++RA+       ++   +    +  +
Sbjct: 6   QKAHIRAIKHFAGFLK---------RSPDTATPDDLRAYQLHMTDTEVTPPTFNTRIMAL 56

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
           +        R    E     M+   +   LP  L+ ++   ++                +
Sbjct: 57  RFLFGTTCDR----EDMKRYMQFRTQPRRLPSVLSIEEVSEVLAA--------APGPGLK 104

Query: 156 NSAILYLLYGCGLRISEALSLTPQN--------IMDDQSTLRI-QGKGDKIRIVPLLPSV 206
             A L + YG GLR SE  SL   +           D+  + + +GKG K R V L P +
Sbjct: 105 YRAALSISYGAGLRASEVCSLKVSDIVPLARLRHDSDRMLIHVDEGKGGKDRKVMLSPDL 164

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              + +Y+           +  LF G  +  P++     R     +  +GL    T HTL
Sbjct: 165 LDLLRDYWREA------RPEGWLFPGKPKITPISARQLSRSFNSAKHLVGLSKPATLHTL 218

Query: 266 RHSFATHLLSNGGDLRSIQ 284
           RHSFATHLL      R I 
Sbjct: 219 RHSFATHLLEVNIPSRQIA 237


>gi|154267925|gb|ABS72060.1| integrase-like protein [Ruminococcus gauvreauii]
          Length = 278

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 60/283 (21%), Positives = 118/283 (41%), Gaps = 31/283 (10%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           SK T+  Y    R+   +L             ++L+   +  +    + Q +  +++  +
Sbjct: 22  SKATVSKYLRTVRKLAEYLQG-----------KELTKPRLLEYREILQNQ-VKAQTVNGT 69

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           LS I +FL++   +          ++ LK        L+E + L+  +   L  + + K 
Sbjct: 70  LSSINAFLEFCGWQD-------CKIKLLKVQRK--AFLDETRELSEAEYKQLLAAAQAKG 120

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
            +     +L +  G G+R+SE   +T +     ++ + ++GK    R V L   +R  +L
Sbjct: 121 NERLYLVMLTIC-GTGIRVSELQHITVEAAQTGRAEICMKGKN---RTVLLQKELRVRLL 176

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFA 270
           +Y      D     +  +FR   GKPL+       +++L     + P     H LRH FA
Sbjct: 177 KYAKELGID-----EGHIFRTRSGKPLDRTNICHDMKKLCASAKVDPRKVFPHNLRHLFA 231

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
               +   +L  +  ILGH R+ TT+IY   ++      + ++
Sbjct: 232 RSFYAIEKNLAHLADILGHSRIETTRIYVAASATAHERILNKM 274


>gi|217033667|ref|ZP_03439094.1| hypothetical protein HP9810_5g9 [Helicobacter pylori 98-10]
 gi|216943856|gb|EEC23293.1| hypothetical protein HP9810_5g9 [Helicobacter pylori 98-10]
          Length = 355

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 121/283 (42%), Gaps = 16/283 (5%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           K T+        Q L     Y ++ + +++ R LS  ++  F+ +   Q     S+ + +
Sbjct: 69  KHTI------MMQGLFLFFDYFKDNLKLRSFRMLSEEQVIDFLFEL-AQNRKPSSMTKYV 121

Query: 93  SGIKSFLKYLKKRKITTESNIL-NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
             ++ F  YL ++K       L N+   K   +LPR LN K     +  +L ++   +  
Sbjct: 122 MYLRQFFDYLDRKKHYNFDFALKNLAFAKTKENLPRHLNYKDLKAFLKTLLEYSPATS-- 179

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKA 209
            + RN  IL ++   GLR  E L++  ++I  ++   ++ IQGKG K R   +  S+ + 
Sbjct: 180 FEKRNKCILLIVILGGLRKCEVLNIELKHIQVEKQNYSILIQGKGRKERKAYIKKSLLEP 239

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL----STTAHTL 265
            L  +    + L     + LF+  + K  N      +I  + +   +       T  H  
Sbjct: 240 SLNAWISDDYRLKYFNGVYLFKKDKQKAQNSLTLYNFIPLIFKLAQIKHYKQYGTGLHLF 299

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           RHSFAT +     DL      LGH  L +T+IY +   ++   
Sbjct: 300 RHSFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHNKK 342


>gi|238788398|ref|ZP_04632192.1| Integrase [Yersinia frederiksenii ATCC 33641]
 gi|238723644|gb|EEQ15290.1| Integrase [Yersinia frederiksenii ATCC 33641]
          Length = 334

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 98/234 (41%), Gaps = 29/234 (12%)

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           RT+ +  R+L   L+ +++    L +      ++ + ++R  +        L ++Q   L
Sbjct: 123 RTKGVTPRTLNIELAYLRAMFNELSRLGEWRQDNPLRDVRQYRTDEQEMAFLTKEQIGKL 182

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++     +  E        + ++ L    G R SEA SLT   +M  + T   + KG + 
Sbjct: 183 LEECENSSVPEL-------ATVVRLCLATGARWSEAESLTHTQVMPYKVTYT-KTKGKRN 234

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R +P+   +  ++ +                  +  R  P     F+  ++  R  + LP
Sbjct: 235 RSIPISEELFNSLPK------------------KNGRLFPSCYAAFRTALK--RTNIKLP 274

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               +H LRH+FA+H +  GG++  +Q ILGH  +  T  Y +   ++  D + 
Sbjct: 275 DRQCSHVLRHTFASHFMMKGGNILVLQRILGHTDIKMTMRYAHFAPEHLDDAIK 328


>gi|282920050|ref|ZP_06327778.1| hypothetical protein SASG_02692 [Staphylococcus aureus subsp.
           aureus C427]
 gi|282316221|gb|EFB46601.1| hypothetical protein SASG_02692 [Staphylococcus aureus subsp.
           aureus C427]
          Length = 390

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 99/292 (33%), Gaps = 39/292 (13%)

Query: 53  YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
           +  E+   + I+ ++  E + F++    Q      +   ++      KY    K+     
Sbjct: 93  HAIERFNNKPIQTINKHEYQRFVNDISAQ-YSKNYVDSIIASTNMIFKYAYDMKLIRILP 151

Query: 113 ILNMRNLKKSNSL---------PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
              ++  KK  S+          + L + +    ++    H S +  +       +   L
Sbjct: 152 SEGIKRPKKKVSVEELEDTEIYKKFLEKDELFQFLEIAKNHHSPQNSFE------VFCTL 205

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP------------------LLPS 205
              G+R  E L+L   +I  + +T+ I                             + P 
Sbjct: 206 AYTGMRAGELLALKWSDIDFENNTINITKTYYNPNNNKKQYQILTPKTESSIGKISVDPH 265

Query: 206 VRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTT 261
           V K +  Y           + +    +F  + G PL     Q +I+ + +   +     +
Sbjct: 266 VIKLLKNYKTDVQDTWKNELYVDNNFVFTDVNGYPLVIKKLQLWIKAILKKTDITNKQIS 325

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMME 312
            H+ RH+    L+  G  ++ IQ  L H  ++TT  IY  + +    D   +
Sbjct: 326 THSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKITNSYKKDASQK 377


>gi|330958516|gb|EGH58776.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 321

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 62/295 (21%), Positives = 119/295 (40%), Gaps = 18/295 (6%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            ++ K  + +L  L      S+LT+     D    L          I       L    +
Sbjct: 20  PDVNKPLRLYLDRLAPS---SRLTMTYVLQDAADRLGMADV----DIHDIPWHTLQPGHV 72

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRAL 129
            A ++  R       +    ++ I+  +    +  + T   +L +R++K      L +  
Sbjct: 73  TALVATLREDDYAPNTTSLYVNAIRGVMNEAWRHDLITHDQLLKIRSIKPVSGTRLAKGR 132

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           N +   TL+  ++   + + +    R++AI+ +LYG G+R SE+++L    I   + +LR
Sbjct: 133 NIR--RTLIRELMETCAADPRPQGRRDAAIIAILYGSGMRKSESVNLDLAQIDFAERSLR 190

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNP-GVFQR 245
           + GKG+K  I        +A+ ++ +L    L        F   R  RG  +    + + 
Sbjct: 191 VLGKGNKQLIKYAPEWAFRALNDWLELRRSCLQPGQGDDPFLFNRIRRGSHITRERITKH 250

Query: 246 YIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            I  + +  G  + ++   H  R SF T ++    DL   Q +  H  +STT  Y
Sbjct: 251 AIYFIAKQRGREVGVNIMPHDFRRSFITRVIEE-YDLSIAQKLAHHTHISTTASY 304


>gi|253563307|ref|ZP_04840764.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|251947083|gb|EES87365.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
          Length = 394

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 53/297 (17%), Positives = 106/297 (35%), Gaps = 24/297 (8%)

Query: 21  WLQNLEIER--GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +L+ +E +R  GL+  T++ Y         F A +         I  +S + I  F    
Sbjct: 111 YLEFVERKRKEGLNPETIRVYMTTFNVLKEFKAEFR--------ISDISLSFIEQFDDHM 162

Query: 79  RT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R                 ++ +  ++K  I  ++     +           L++ +  T+
Sbjct: 163 REVNGNSPGGRNPKHKNFRTVILDIQKHNIPVDNPYRWFKIPSSEVKE-VYLDKSELHTI 221

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDK 196
           ++          ++   +   +      CGLR S+ + L  ++I      +R +  K   
Sbjct: 222 MEYTERFDKSSKEYKILK---MYQFSCFCGLRFSDTMDLRWKDIDFANCLIRRMMIKTKT 278

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
             I PL P  R  ++E  +      +       F              + +R+  +  G+
Sbjct: 279 EVITPLFPMARDILMERSNNGKLIGSDEKVFYNFAEP--------TVNQALRKEAKLAGI 330

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
               T H+ RH+FAT L+ +  D+  I   LGH  ++ TQ Y   +     +   +I
Sbjct: 331 DKHITYHSSRHTFATLLVIDNVDIYKISKYLGHKSVNMTQRYLKYDLSIAKESAKDI 387


>gi|160946088|ref|ZP_02093302.1| hypothetical protein PEPMIC_00037 [Parvimonas micra ATCC 33270]
 gi|158447820|gb|EDP24815.1| hypothetical protein PEPMIC_00037 [Parvimonas micra ATCC 33270]
          Length = 383

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 105/289 (36%), Gaps = 36/289 (12%)

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
           EE      +++L+    + FI++  + K    ++K+  + IK+ L+   +  I  +    
Sbjct: 93  EEHFPGVKMKELTREMYQKFINEI-SPKYATDTVKKRHTYIKACLQEAIQEGIIFKDPTY 151

Query: 115 N--MRNLK-KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
              ++  K   N   + LN  +   LV      T  + +        IL      G R S
Sbjct: 152 KVIIKGKKDTKNEELKYLNFNEVQKLV----AETKKDLRPRYISRYVIL-FAIATGARFS 206

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKI--------------RIVPLLPSVRKAIL----EY 213
           E + +T   +     T+ I    D                R + +       +     E 
Sbjct: 207 EIMGITWDCVDFKNRTITINKTWDFKDTNDFSDTKNYASKRTITIDTETVDMLQTLKSEQ 266

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                     N +  +F   + + ++     + +R L +   +    T H LRH+ A+ L
Sbjct: 267 NKKALQTGLRNKKNLVFVNTKMQLVSNNAVNKTLRTLCKAAKI-KEITCHGLRHTHASML 325

Query: 274 LSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKN-------GGDWMMEIY 314
           L  G +++ I   LGH  + TT Q Y+++  +          D M EI+
Sbjct: 326 LYKGVNIKYISRRLGHKDIVTTLQTYSHILDEMEQVESRVVDDTMKEIH 374


>gi|94995293|ref|YP_603391.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS10750]
 gi|94548801|gb|ABF38847.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS10750]
          Length = 387

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 55/318 (17%), Positives = 128/318 (40%), Gaps = 35/318 (11%)

Query: 22  LQNLEIERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           L +L +E    KLT++  +Y+    +    L  +    +    + +++ ++I+  I++  
Sbjct: 79  LSHLWLETY--KLTVKPQTYDATVTR----LNRHIMPTLGNMKVDKITASDIQMLINRLS 132

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK---SNSLPRALNEKQALT 136
              +   +++   S I+  L+      +   ++  ++   +K   +    + ++     +
Sbjct: 133 KYYVNYTAVR---SVIRKVLQQGVLLGLIDYNSARDIILPRKQPNAKKKVKFIDPSDLKS 189

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
            +++  L TS   ++    ++ +  LL   GLRI EA +L   +I  +  T+ I    +K
Sbjct: 190 FLEH--LETSQHKRYNLYFDAVLYQLLLSTGLRIGEACALEWGDIDLENGTIAINKTYNK 247

Query: 197 I-------------RIVPLLPSVRKAILEYYDLCPFDLN---LNIQLPLFRGIRGKPLNP 240
                         R++ +     +++  Y        N     +   +F     K  N 
Sbjct: 248 NLKFLSTAKTQSGNRVISVDKKTLRSLKLYQMRQRQLFNEVGARVSEVVFATPTRKYFNA 307

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYT 299
            V Q  +    +  G+    T H  RH+ A+ LL+ G   + +Q  LGH  +S T   Y 
Sbjct: 308 SVRQSALDTRCKEAGIER-FTFHAFRHTHASLLLNAGISYKELQYRLGHANISMTLDTYG 366

Query: 300 NVNSKNGGDWMMEIYDQT 317
           +++     + ++  Y++ 
Sbjct: 367 HLSKDKEKEAVL-YYEKA 383


>gi|168212716|ref|ZP_02638341.1| transposase A from transposon [Clostridium perfringens CPE str.
           F4969]
 gi|170715669|gb|EDT27851.1| transposase A from transposon [Clostridium perfringens CPE str.
           F4969]
          Length = 375

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 132/352 (37%), Gaps = 55/352 (15%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           F+++ E + +L+ L+   G S  TL++Y    + +  ++         +         +I
Sbjct: 21  FKVVDEVKRFLKYLDN-NGKSPNTLKNYAFHLKTYYEYMNNIGINIKNLCNTPNKGPVDI 79

Query: 72  RA-FISKRRT----QKI-------GDR---SLKRSLSGIKSFLKYLKKRKITTESNILNM 116
            + FI+  +     + I         R   ++   +  + SF +Y     ++  + +  +
Sbjct: 80  LSEFITYLQYPDAFKGIVHINGEEAVREDITVNIIIDTVLSFYQY-----LSKNNELEEL 134

Query: 117 RNLKKSN---SLPRALNE---------------KQALTLVDNVLLHTSHETKWID--ARN 156
              KK          L E                      + V     +E  +     R+
Sbjct: 135 DLYKKQRINTKFKSFLYELISNKTEMNKSLFKKSVVEKDFEYVTREQFNELFFACNLERD 194

Query: 157 SAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRI----------QGKGDKIRIVPLLPS 205
             IL LLY  GLRI+E L    ++I   +    +I          + K     I+ L P 
Sbjct: 195 RLILALLYEGGLRINEVLGAHFEDISQLEDGIFKIVPRENNENGARVKNYAAGIIKLPPY 254

Query: 206 VRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           V   IL+Y +    + + N + L L+   +G P+     Q+   +L + +G       H 
Sbjct: 255 VIDMILDYINSDILEYDSNFVFLNLYGKNKGTPIKAITIQKLFDRLSKKVG--YHVHPHM 312

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           LRH FAT  L  G +L  I   L H  + +TQIY + +       +++  D+
Sbjct: 313 LRHGFATEKLEIGWNLEDISRYLRHKNIQSTQIYAHYSDNLKKMKIVKFLDE 364


>gi|301308954|ref|ZP_07214899.1| integrase [Bacteroides sp. 20_3]
 gi|300832980|gb|EFK63605.1| integrase [Bacteroides sp. 20_3]
          Length = 379

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 54/295 (18%), Positives = 103/295 (34%), Gaps = 25/295 (8%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIG 84
            + +  SK T   Y    R+++        ++  I T+ +L+   IR +    R +  + 
Sbjct: 99  RVGKDRSKRTYLKYLT-VRKYVAEFIRKQYKRADI-TMNELTEDFIRDYCLYLRNEAGLA 156

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S+      +K  +           +    M ++   +     L E++   L    L +
Sbjct: 157 QSSVWIYSIPLKHIVTTAHYNGKIPRNPFA-MYHVDPDHKERGFLTEEELQALGAIKLEN 215

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVP 201
            +       A    +       G+   +  +LT  N+++    L I   + K      V 
Sbjct: 216 PNF------ALARDLFLFGCWTGISFIDIKNLTTDNVVEINGALWIVSKRQKTGVPFQVK 269

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           L+    + I  Y          NI             +  +  + I+ + R  G+    +
Sbjct: 270 LMDIPMQIIKRYEPFRKDKRLFNIG------------SLDMVNKRIKSIARKCGIEKPVS 317

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            H  RHSFA   L+ G  + S+  ILGH  + TTQIY  V +      +    ++
Sbjct: 318 FHLSRHSFAVMALNYGMPIESVSKILGHTDIKTTQIYAKVTNTKLNSDISAFENK 372


>gi|313886120|ref|ZP_07819854.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332300732|ref|YP_004442653.1| integrase family protein [Porphyromonas asaccharolytica DSM 20707]
 gi|312924423|gb|EFR35198.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332177795|gb|AEE13485.1| integrase family protein [Porphyromonas asaccharolytica DSM 20707]
          Length = 423

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 114/289 (39%), Gaps = 24/289 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKR 90
           S  TLQ Y+   R+F  FL      +     + +L+Y  I  F    RT       +  +
Sbjct: 139 SAPTLQKYKVCKRRFSEFLKDKLRRR--DLKLTELTYMIIHDFDLYLRTVVGQNPNTATK 196

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           ++   K+ +   +K  +      +N R   +  +    L +++ L +V+  L     E  
Sbjct: 197 TMKTFKTIVILGQKLGVLHHDPFVNFRFHLEPVNR-GFLTDEEVLQIVNKELNIPRLEL- 254

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMD---DQSTLRIQGKGDKIRIVPLLPSVR 207
               R+  I       GL   +  +LTP NI+     +  +  + K      V LL   +
Sbjct: 255 ---VRDIFIFSCF--TGLAYIDVANLTPDNIVMLGGKEWIMTKRQKTSVETNVLLLDIPK 309

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + I +Y      D           G     L+      Y++++    G+  + T H  RH
Sbjct: 310 RIISKYSHQTYRD-----------GKLFPILSNQKTNSYLKEIADICGIKKNLTFHLARH 358

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +FAT  LS G  + S+  +LGH  + TTQIY  + +K     M +  D+
Sbjct: 359 TFATMSLSKGVPIESVSKMLGHTNIRTTQIYARITNKKIEHDMEQFADK 407


>gi|322836787|ref|YP_004210701.1| integrase [Acidobacterium sp. MP5ACTX9]
 gi|321165874|gb|ADW71574.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 320

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 108/278 (38%), Gaps = 20/278 (7%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ + +SY      F  ++    +   T       +   ++ + S    Q +   ++   
Sbjct: 34  SEHSRRSYRTGLTAFFGWIRVGVDVSGTEPAF---TKALVQLYRSSLLVQGLSSSTVNLR 90

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNL----KKSNSLPRALNEKQALTLVDNVLLHTSH 147
           LS ++   + +    +   +    +  +    K+ N +   L ++QA     N LL+  +
Sbjct: 91  LSPLRKLAREMADNGMLDPATAAAIERVPGVEKRGNRVGNWLMKEQA-----NDLLNAPN 145

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLP 204
                  R+ AIL LL GCGL  +E L +  +++   +    +   +GKG ++R V +  
Sbjct: 146 SKTLTGLRDRAILALLLGCGLCRAELLRINVEDLQQREGRWVLPDMEGKGSRVRTVTVPA 205

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL---NPGVFQRYIRQLRRYLGLPLSTT 261
            V+  I  +        +  +  P+ +          +     R + +  +   L     
Sbjct: 206 GVKTRIDAWLKASGI-TDARLFRPVSKAGELAGTEIRDEKAVWRLVMRYAKATDLGK-LA 263

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            H LR + A      GGDL  IQ +LGH  + TT+ Y 
Sbjct: 264 PHDLRRTCAKLCRKAGGDLEQIQLLLGHASIQTTERYL 301


>gi|172055243|ref|YP_001806570.1| integrase/recombinase [Cyanothece sp. ATCC 51142]
 gi|171701524|gb|ACB54504.1| probable integrase/recombinase [Cyanothece sp. ATCC 51142]
          Length = 211

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 72/186 (38%), Gaps = 12/186 (6%)

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
             K       L   +   L+       + +      R++ ++ L Y  GLR+SE  +L  
Sbjct: 28  PYKEKRPREYLVPHEVEELI-----AVAKKRGRYGHRDATMILLTYRHGLRVSELCALRW 82

Query: 179 QNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
           + I  D     +Q  K     + PL     +A+                  LF   RG P
Sbjct: 83  EQIDFDTGLFHVQRLKQGLPSVHPLRGPELRAL------RKLKRESPPSSYLFVTERGSP 136

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +    F++ + ++     +      H LRH+    L+++G D+R IQ  LGH  +  T  
Sbjct: 137 MTTAGFRKLLTRVAECSSISFPVHPHMLRHACGYKLVNDGHDIRMIQQYLGHKNIQHTVR 196

Query: 298 YTNVNS 303
           YT +++
Sbjct: 197 YTTLSA 202


>gi|37524279|ref|NP_927623.1| hypothetical protein plu0260 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36783702|emb|CAE12555.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 188

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 48/180 (26%), Positives = 75/180 (41%), Gaps = 8/180 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L + +  ++++   +  + E       N  ++Y+ Y  G R+SEA  L   ++   + 
Sbjct: 5   KYLTQSEVESMLEMAKVGPNPER------NYCLVYMSYIHGFRVSEARHLRLSDMELKEK 58

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            L I+  KG      PLL    KAI  +  +    L       LF    GKPL      +
Sbjct: 59  CLYIRRLKGGFCTNHPLLQREVKAIKAWLKVRKT-LQGADSDWLFLSRCGKPLTRQRIYQ 117

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            I QL +   + +    H LRH+    L   G D R IQ  LGH  +  T  YT  N++ 
Sbjct: 118 IINQLGQRANIAVDPHPHMLRHACGFALADRGIDTRLIQDYLGHKNIRHTVRYTASNAER 177


>gi|317126072|ref|YP_004100184.1| integrase [Intrasporangium calvum DSM 43043]
 gi|315590160|gb|ADU49457.1| integrase family protein [Intrasporangium calvum DSM 43043]
          Length = 374

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 100/271 (36%), Gaps = 35/271 (12%)

Query: 45  QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK 104
           ++   +  +   +     +  L ++++R +++      +   +++++   +   L    K
Sbjct: 82  RYRGLMCGHILPRFGAWAVADLRHSDVRDWVNDLSASGLSAGTVRQAHRVLSLILSESVK 141

Query: 105 RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLY 164
                 +    ++  +   + PR L+  +   L+                 N   + +L 
Sbjct: 142 DGRIARNVAAGVQLPRAVRADPRFLDADEVARLI------------AGAGTNGLSIAVLA 189

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQ--------------GKGDKIRIVPLLPSVRKAI 210
            CGLR  E  +L  +     +  L +                K ++ R VP  PS+   I
Sbjct: 190 FCGLRFGELAALRVRRANVLRRRLVVAESVTEVGGRLVWSLPKTNRTRTVPFPPSLTPQI 249

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYLGLPLSTTAHTLRHSF 269
                             LF    G  L  G ++R +     R  GL +  T H LRH+ 
Sbjct: 250 EALCR------GKGPDDLLFTAPEGGALRLGNWRRRVFDPACRAAGL-VGVTPHDLRHTA 302

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTT-QIYT 299
           A+  +++G +++++Q +LGH   + T  +Y 
Sbjct: 303 ASLAIASGANVKAVQQMLGHASAAMTLDVYA 333


>gi|295090449|emb|CBK76556.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 413

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 140/356 (39%), Gaps = 45/356 (12%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           +  N  P+  +F +L+  + ++      R     T  +Y          +    +E    
Sbjct: 71  LNSNITPDGGNFTVLELVEKYISQKTGVRH---NTRSNYN-------FVVNVIKKEDFGQ 120

Query: 61  QTIRQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRN 118
           + I ++  ++ + ++ K +     G  S+      ++   +      +  ++     +  
Sbjct: 121 KRIDKIKVSDAKEWLIKMQQIDGRGYSSIHTIRGVVRPAFQMAVDDDLLVKNPFEFQLNT 180

Query: 119 LKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           +  ++S+ R A+  +Q    ++  + +  H  K+ D      +Y+L+  GLRISE + LT
Sbjct: 181 VVVNDSVTREAITRQQERDFLE-FVKNDKHFCKYYDG-----IYILFKTGLRISEFVGLT 234

Query: 178 PQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAILEYYDLCP--- 218
            +N+  + S + +                       R+VP+ P V++A            
Sbjct: 235 KKNLDFENSRIIVDHQLQRTRDMKYIIEDTKTESGERMVPMTPEVKEAFQRILANRKNPK 294

Query: 219 -FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-----PLSTTAHTLRHSFATH 272
              +       LF    G+P+    +++Y + +R              T H  RH+F ++
Sbjct: 295 VEPMVDGYSGFLFLDKNGRPMVALHWEKYFQHIREKYNKIYRVQMPKVTPHVCRHTFCSN 354

Query: 273 LLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
           +  +G + +++Q I+GH  +S T  +YT++N  +  + M ++        T   K+
Sbjct: 355 MAKSGMNPKTLQYIMGHSDISVTLNVYTHLNYDDAEEEMQKVVGTASMKSTTHRKR 410


>gi|282852712|ref|ZP_06262054.1| toxin-antitoxin system, toxin component, PIN family [Lactobacillus
           gasseri 224-1]
 gi|282556454|gb|EFB62074.1| toxin-antitoxin system, toxin component, PIN family [Lactobacillus
           gasseri 224-1]
          Length = 386

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 44/327 (13%), Positives = 105/327 (32%), Gaps = 53/327 (16%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY--- 68
            +  +  + WL+N        K T++          +F   +   ++    I +++    
Sbjct: 72  HKFSELYEMWLENY-------KNTVK--VSTLSNTKLFFRLHILPELGNLYIEKITTFKC 122

Query: 69  -TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK---KSNS 124
              +  +  +        ++ K   +   +  K+     +  ++ + ++   K   +   
Sbjct: 123 QKIVNKWFKEL------PKTYKVYTNLASNIFKFAVNNDLIAKNPMKSVIKPKLQVEKKP 176

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
                ++ +    +           +    +   +  LL   G+R  EAL+L   +I   
Sbjct: 177 FTNFYSKNELNIFL-------KEAKECKGLKVYMLFRLLAYTGMRRGEALALKWSDIDFS 229

Query: 185 QSTLRIQGK----------------GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
             T++I                       R + +     K +  +       L       
Sbjct: 230 NQTIKINKTVTTAEHAALIIGTPKTKASYRTIAIDRQTIKYLSGWRKEQRKQLFQLGFNA 289

Query: 229 L------FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
           L      F       +     +++ + + ++ GL    T H  RH+ A+ L   G  ++ 
Sbjct: 290 LSDDQLIFSNGDNTLIRQATVRKWDQSISKHAGL-KYITVHGFRHTHASLLFEAGTPMQD 348

Query: 283 IQSILGHFRLSTTQ-IYTNVNSKNGGD 308
           ++  LGH  ++TT  IYT+V       
Sbjct: 349 VKERLGHSSITTTMNIYTHVTKSAKKK 375


>gi|196040606|ref|ZP_03107905.1| site-specific recombinase, phage integrase family [Bacillus cereus
           NVH0597-99]
 gi|196028396|gb|EDX67004.1| site-specific recombinase, phage integrase family [Bacillus cereus
           NVH0597-99]
          Length = 370

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 106/271 (39%), Gaps = 31/271 (11%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           + +L+   ++ +++  R   +   ++++ +  I++ L++    ++ T++     +  K  
Sbjct: 107 LAKLTSLHMQNYVNSLRDDGLKRGTIEKIIKIIRNSLEHAIDLELITKNVAAKTKLPKGD 166

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
                  NE +  + +              D+R S + ++    G+R  E L L  +++ 
Sbjct: 167 KEELIVWNEHEVQSFLKA----------AQDSRYSIVFHMALVTGMRQGELLGLRWKDVD 216

Query: 183 DDQSTLRIQ--------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
            ++  L I                    +R + L  S    + ++  +   +     +  
Sbjct: 217 LEKGHLTISQTLSHDGKTFLLGGKTKSSLRKILLPASTVAKLKKHRAVVLKEKLSQGEEY 276

Query: 229 -----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                +     G P+NP   +R +  L +   +P     H LRH+ AT LL+ G +++ I
Sbjct: 277 QDNDLVMCTPSGTPINPANVRRSLNALIKKAAVPK-IRFHDLRHTHATLLLAKGVNVKVI 335

Query: 284 QSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
              LGH  +  T   Y++V      D + +I
Sbjct: 336 SERLGHSNIKITLDTYSHVLPTMQEDVVKKI 366


>gi|160934965|ref|ZP_02082351.1| hypothetical protein CLOLEP_03840 [Clostridium leptum DSM 753]
 gi|156866418|gb|EDO59790.1| hypothetical protein CLOLEP_03840 [Clostridium leptum DSM 753]
          Length = 414

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 66/310 (21%), Positives = 112/310 (36%), Gaps = 46/310 (14%)

Query: 22  LQNLEIER-GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           L  LEI +  +   T  SYE   +Q +    ++  + IT++ +       I+ F S+ + 
Sbjct: 86  LGWLEIVKVRVKPTTFGSYESMVKQTIE--PYFRNKPITLKDLE---ARHIQQFYSE-KL 139

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +   S+    + I   LKY  K  +  ++  + +   KK++  P  L+  +   L D 
Sbjct: 140 KTVKPNSVIHYHAVIHQALKYAMKTDLVAQNVAMKVDRPKKNDFQPVFLDAAELQHLFDV 199

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI--- 197
           V             +    + +    GLR  E L L    I  ++ TL I+     +   
Sbjct: 200 VK----------GTKLELPVLVAAFYGLRRGEVLGLKWDAIDFERGTLTIKRTVTSVNVG 249

Query: 198 ------------------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
                                   R       V+ A      +C    N      +F   
Sbjct: 250 GKTQVIEQESAKTKSSMRTLPLVGRFREYFAEVKAAQELNKQVCGNCYNYEYDGFVFVDE 309

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            G+ +             +  G+      H LRHS A+ LL+NG  L+ IQ  LGH   S
Sbjct: 310 LGERMKTDYLTSQFPAFIQRHGM-KKMRFHDLRHSCASLLLANGVPLKQIQDWLGHSDFS 368

Query: 294 TTQ-IYTNVN 302
           TT  IY +++
Sbjct: 369 TTANIYAHLD 378


>gi|197284170|ref|YP_002150042.1| fimbriae recombinase [Proteus mirabilis HI4320]
 gi|6453632|emb|CAB61438.1| MrpI [Proteus mirabilis HI4320]
 gi|194681657|emb|CAR40716.1| fimbriae recombinase [Proteus mirabilis HI4320]
          Length = 188

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 73/180 (40%), Gaps = 8/180 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L   +   ++         +      R+  +  + +  G R+SE  +LT  +I  +  
Sbjct: 5   KFLTRFEVNAILKQ------AKEGRYPERDYCMFLMCFLHGFRVSELCNLTLSDIDLESR 58

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            L ++  KG      P++    +A+  +          + +  +F   +  P++      
Sbjct: 59  ILYVRRLKGGLSTTQPIIDEEYEALCNWLKSRENWRESDSE-WVFLSQKTGPISRQQVYG 117

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +R+L +   + +S   H LRH+    L   G D R IQ  LGH  +S T IYT  NSK 
Sbjct: 118 LLRRLGKKANVSISPHPHMLRHACGYALADLGRDTRLIQDYLGHRNISHTVIYTASNSKR 177


>gi|255103348|ref|ZP_05332325.1| phage integrase family protein [Clostridium difficile QCD-63q42]
 gi|255652426|ref|ZP_05399328.1| phage integrase family protein [Clostridium difficile QCD-37x79]
          Length = 311

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 62/293 (21%), Positives = 118/293 (40%), Gaps = 21/293 (7%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G S+ T+ +YECD  QF  FL     + +    +  ++  EI A+I         ++ ++
Sbjct: 34  GKSEKTIYNYECDIMQFFKFLNIECFDAL----LTDINEEEIEAYIGYCMEHGNNEKRIR 89

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR--ALNEKQALTLVDNVLLHTSH 147
           R +S I S L +LKK++  T++    +        + +   L E+Q   L + +      
Sbjct: 90  RRISSISSLLSFLKKKRKITDNWCEMIERPGTGEEVQKRTFLTEEQLSKLKEKL------ 143

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSV 206
            ++  + +    + L      R +E       NI  D   +  I  KG   R       V
Sbjct: 144 -SEQDNLQLEVYINLGLATMARSNEISQFRWDNIDLDNRWIHGITAKGGVSRDFRFSEEV 202

Query: 207 RKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           +  ++E+   L   +++         G +   +N  V   ++++  R +G+      H L
Sbjct: 203 QHLLIEWKDYLSQNNIDYPYIFFTRYGGKYNQVNSNVLSSWVKKAFRLIGIEGGYN-HDL 261

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQT 317
           RHS +  L   G  + ++  +LGH  +  T   YT        + + E YD+ 
Sbjct: 262 RHSMSNLLKDRGVPITTVSKLLGHSGVDVTINHYT----IENKNKLAEEYDKF 310


>gi|90962164|ref|YP_536080.1| Phage integrase [Lactobacillus salivarius UCC118]
 gi|90821358|gb|ABD99997.1| Phage integrase [Lactobacillus salivarius UCC118]
          Length = 381

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 100/250 (40%), Gaps = 28/250 (11%)

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           + +S +K+ L Y  +  +   + +L +   KK       +++K       + L       
Sbjct: 135 QIISIVKNTLDYALRLGMIESNPMLYVIKPKKQT----TISDKHGNYYNKDELKKFLAAA 190

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK---------------G 194
           K  D +   +  LL   GLR+ E L+LT  ++    +T+ I                   
Sbjct: 191 KDTDLKKYTLFRLLAYSGLRVGECLALTWHDLDYKNNTIAINKTYAKTNNGIKIQTPKTK 250

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDL------NLNIQLPLFRGIRGKPLNPGVFQRYIR 248
             IR V L     + + E+       L       +N Q  +F   +   +     +  I 
Sbjct: 251 ASIRKVSLDVETIQVLKEWQLNQRKQLLKVGINAMNKQQLIFSNNKNSFIANETVRLAIH 310

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGG 307
           Q+ +  G+    T H  RH+ AT L ++G D++ +Q+ LGH  + TT  IYT+   ++  
Sbjct: 311 QIAKKTGIH-PITTHGFRHTHATLLFASGMDIKQVQARLGHSNVQTTLNIYTHA-IQDKQ 368

Query: 308 DWMMEIYDQT 317
           D + + + + 
Sbjct: 369 DKIGDEFAKY 378


>gi|319902638|ref|YP_004162366.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319417669|gb|ADV44780.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 379

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 55/300 (18%), Positives = 103/300 (34%), Gaps = 39/300 (13%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR---------TQK 82
           S  T ++ +   +  +  L  Y  + I    + ++  + I  FI   +          + 
Sbjct: 101 SGSTNRAKKDILQAIIHHLKRYDPQGIL---LEKIDKSYILGFIEYLKKAKQQHHKAEKG 157

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN---LKKSNSLPRALNEKQALTLVD 139
           +   +       ++  L +    +  +E+ I  ++N    K        L   +   LV 
Sbjct: 158 LHTNTQLYYFKMLRYCLNHAVSEEYISENPINKIKNEEKPKNHKREREYLTISELKRLV- 216

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL----RIQGKGD 195
                    T + +            CGLR  +  +L  +NI  D +       +Q K  
Sbjct: 217 --------RTPFYNKLLKQAFLFSCFCGLRHCDIAALKWKNIHYDDAHNASLSIVQQKTQ 268

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           +   +PL     K + E       D      + L R               + +  +   
Sbjct: 269 EAISLPLSHEAVKYLPERDMAQDDDTVFAGLISLSRS-----------NIILDKWAKQAD 317

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +    T H  RH+ AT LL+ G DL ++  +LGH  + TTQIY  +  ++    +  I D
Sbjct: 318 IQKHITFHVARHTHATMLLTLGADLYTVSKLLGHTNIQTTQIYAKIVDESKVKAIALIPD 377


>gi|295841224|dbj|BAJ07006.1| integrase [uncultured bacterium]
          Length = 392

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 53/284 (18%), Positives = 96/284 (33%), Gaps = 60/284 (21%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           R  S  T+++YE   R++  F      +  T +         ++AF+      +K+   +
Sbjct: 131 RQYSYRTVEAYEYWVRKYFSFHGRNLGKVFTPEG--------VKAFLEHLVLVRKLAGGT 182

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
            K++L+ +      +   ++    +    +  K    LP  L+ +    L+         
Sbjct: 183 QKQALNALDFLFGDVIGMELGDLGDFARSKRPKM---LPVVLSREDMEKLLGE------- 232

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
               +D        +LYG GLR+ E L L  +++    + + ++  KG K R+  L    
Sbjct: 233 ----LDGHLFLAAGILYGSGLRLMEVLRLRVKDVDFSLNQILVRDRKGKKDRVTMLPERY 288

Query: 207 RKAI------------------------------------LEYYDLCPFDLNLNIQLPLF 230
           R  +                                     ++     F        P  
Sbjct: 289 RDLLKAHLDEVKQVHARDLARDYAGTSFWPSLVRKYPYAPRQWIWQYVFPAGRLSVDPST 348

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                  L+    QR +    R  G+    T HTLRH+FATHLL
Sbjct: 349 GKSIRHHLHESALQRAVPAAARKAGIDKRVTCHTLRHTFATHLL 392


>gi|218688736|ref|YP_002396948.1| Integrase [Escherichia coli ED1a]
 gi|218426300|emb|CAR07125.1| Integrase [Escherichia coli ED1a]
          Length = 335

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 58/301 (19%), Positives = 106/301 (35%), Gaps = 43/301 (14%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQ------FLIFLAFYTEEKITIQTIRQLSYTEIR 72
           + W      +R LS+L    +  D R       + + L     E        +++   + 
Sbjct: 54  KPWQAKPADQRRLSELIDAWWVLDGRNQPYGDTYRVRLEKINREMRDPCA-SEMTRKFML 112

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNE 131
            + S +    +   S+ R L  + +    L        E+ +  +R LK  N+    L++
Sbjct: 113 GYRSDKLQAGLMPSSVNRDLCALSAMFTSLIDAEVFHNENPVRGIRKLKVRNTEMAFLSD 172

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            +   L++            ++     +  L    G R  EA  L  ++I+     +   
Sbjct: 173 DEIDRLLE-----------RLEGDARRVAVLCLSTGARWGEAAGLRGEHIV-GNRVMFFN 220

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            K  K R VP+  +V   I                       R   L         R + 
Sbjct: 221 TKNGKSRAVPVSDTVLSLIK---------------------TRKTGLLYQADYIRFRDIL 259

Query: 252 RYL--GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           + +   LP     H +RH+FATH + NGG++ ++Q ILGH  +  T  Y + +     D 
Sbjct: 260 QEVKPDLPKGQATHVMRHTFATHFMMNGGNIVTLQRILGHTTIQQTMTYAHFSPDFLQDA 319

Query: 310 M 310
           +
Sbjct: 320 I 320


>gi|153955558|ref|YP_001396323.1| integrase-related protein [Clostridium kluyveri DSM 555]
 gi|219855951|ref|YP_002473073.1| hypothetical protein CKR_2608 [Clostridium kluyveri NBRC 12016]
 gi|146348416|gb|EDK34952.1| Integrase-related protein [Clostridium kluyveri DSM 555]
 gi|219569675|dbj|BAH07659.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 416

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 120/358 (33%), Gaps = 65/358 (18%)

Query: 18  RQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
            + WL    E E  L+  TL  Y+         L       +    + +L  T I  F S
Sbjct: 75  IKKWLKDYAEAE--LAPKTLYRYK-------ELLYTRIIPALGHIKLNKLQPTHITEFYS 125

Query: 77  KRRT---------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
             R            + +R++      I S L    +      +  L ++  K      R
Sbjct: 126 NLREDGIRNDGKPGGLSERTILHHHRLISSILATAIQWGFILNNPALRLKAPKVEKKEAR 185

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
             N ++   ++  +             +   ++ L    G+R  E  +LT  +I  D  T
Sbjct: 186 HFNIEETAYVLQLIENEP--------IKYKTMITLAIYGGMREGELTALTWSDINFDDCT 237

Query: 188 LRIQG---------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLN-----LNIQL 227
           ++I                 K +  R++ +  SV   + EY      +        +   
Sbjct: 238 IKINKSLQHLPGRDTFIKSTKTETTRLISIPISVMTLLKEYKRWQNTEKLKLGNLWHDSD 297

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLG-----------------LPLSTTAHTLRHSFA 270
            LF    GK + P    ++  +  R                    L      H LRH+ A
Sbjct: 298 ALFTATDGKSIFPSTISKWFLKFIRKHNESIINDDKIPPKDKSKYLLKEVNFHGLRHTSA 357

Query: 271 THLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
           T L++ G D+ ++   LGH R S TT IY++   K   +   ++ +  +  + +  K+
Sbjct: 358 TLLINQGVDITTVSKRLGHARTSTTTDIYSHSLQKADVEAADKLENLFNNEVNKAKKQ 415


>gi|89892756|ref|YP_516243.1| hypothetical protein DSY0010 [Desulfitobacterium hafniense Y51]
 gi|89332204|dbj|BAE81799.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 395

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 58/270 (21%), Positives = 101/270 (37%), Gaps = 39/270 (14%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           T+ +++   I+ F      +     ++    + ++  L+   K++I   +    +   KK
Sbjct: 108 TLGEVTPQHIQDFHQSIFDEGHTPNTVIHYHAVLRRALQNAVKKEIIDSNPADRVDRPKK 167

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           +    +  + ++ + L D +          ++      + L    GLR SE L L    I
Sbjct: 168 NVYHAQFYSAEEMMALFDEI------SDDPLEIC----VKLAAYYGLRRSEVLGLKWDAI 217

Query: 182 MDDQSTLRIQGK--------------------GDKIRIVPLLPSVRKAIL-------EYY 214
             +Q T+ I+ K                        R +PLLPSV K +L        Y 
Sbjct: 218 NLEQKTISIKHKVIEDTVDGKSIAVGEDVLKTKSSFRTLPLLPSVEKLLLAEKEKQEMYR 277

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
            L       +    +     GK + P     +         L      H LRHS A+ LL
Sbjct: 278 KLFKRSYCRDYLDYICLDQAGKLMRPNYVTEHFSWALEKADL-KKIRFHDLRHSCASLLL 336

Query: 275 SNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
           +NG  ++ IQ  LGH   STT  IY++++ 
Sbjct: 337 ANGISMKQIQIWLGHSTFSTTADIYSHLDF 366


>gi|295840975|dbj|BAJ06858.1| integron integrase intI [uncultured bacterium]
          Length = 278

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 59/283 (20%), Positives = 107/283 (37%), Gaps = 60/283 (21%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSL 88
             S  T ++Y    ++F+ F      +        ++   E+ AF++     + +   + 
Sbjct: 18  HYSIRTEENYIQWIKRFIFFHNKRRPK--------EMREKEVGAFLTHLAVDKHVSASTQ 69

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            ++LS I    K +          + N+   K+   LP  L + +   +++N        
Sbjct: 70  NQALSAILFLYKRVLN---IELDWLDNVVRAKRPKHLPVVLTKTEVRNVLEN-------- 118

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVR 207
              I   N  +  LLYG G+R+ EAL L  Q+I  +Q  + ++ GKG+K R+  L  ++ 
Sbjct: 119 ---ITGTNQLVAQLLYGTGMRLMEALRLRVQDIDFEQFQIIVRSGKGNKDRVTTLPEALV 175

Query: 208 KAI------------------------------------LEYYDLCPFDLNLNIQLPLFR 231
           + +                                    LE+     F  N     P   
Sbjct: 176 EPLKKQIAHARIIYQGDLAEGFGRVYLPFALDRKYPNAGLEFGWQYCFPSNNRSTNPRTS 235

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
            +    L+       IR   R++G+    ++HT+RH FATHLL
Sbjct: 236 LVGRHHLHEKNISGAIRNACRHVGIYKRVSSHTMRHCFATHLL 278


>gi|270160272|ref|ZP_06188927.1| putative transposase B [Legionella longbeachae D-4968]
 gi|269987194|gb|EEZ93450.1| putative transposase B [Legionella longbeachae D-4968]
          Length = 462

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 55/318 (17%), Positives = 114/318 (35%), Gaps = 27/318 (8%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           +I++  L    + +++     R  +  T + Y      F  +L    +   +      ++
Sbjct: 45  KIITPWLKDAAKKFVRFQAATRSFA--TCRGYIRSFNHFDEYLQTIEDSFAS----STIN 98

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT--ESNIL-NMRNLKKSNS 124
            + I  FI     + +   +   +L  ++ F + +         E  I+ N    + SN 
Sbjct: 99  RSHIVGFIQYLSKKNLRPMTRGITLINLRVFHQIVLLEGWLDWPEKPIVYNSDLPRDSNK 158

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP----QN 180
            P+ ++E     L         H   + +     I+ ++   G RISE  SL+     ++
Sbjct: 159 APKYISEHVLKQL-------KRHIHNFPEWMQHFIIIIM-ETGRRISEVCSLSFDCLEED 210

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
              D      + K   IR++P+      AI    +L   D       P  R  +   ++ 
Sbjct: 211 GDGDLLLRVNEQKLKHIRLIPISKECINAIKAQQNLVLSDEVSKYLFPSHRASKTPTVSA 270

Query: 241 GVFQRYIRQLRRYLGLPL------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
               R ++ L    G+          ++H  RH+  T +++ G     +Q  LGH     
Sbjct: 271 AHINRSLKTLAVEHGIKDTNGVIWKFSSHQFRHTIGTQMINAGVPQVMVQHYLGHESPEM 330

Query: 295 TQIYTNVNSKNGGDWMME 312
           T  Y +++++       E
Sbjct: 331 TARYAHIHNETMKKAFTE 348


>gi|300215222|gb|ADJ79638.1| Phage integrase [Lactobacillus salivarius CECT 5713]
          Length = 381

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 114/277 (41%), Gaps = 30/277 (10%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           + +++  + + F++  +T K+   +   S+S +K+ L Y  +  +   + +L +   KK 
Sbjct: 110 VDKITLRQCQDFVN--KTFKVAPVAYVYSVSIVKNTLDYALRLGMIESNPMLYVIKPKKQ 167

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
                 +++        + L       K  + +  A+  LL   G+RI E L+LT  ++ 
Sbjct: 168 A----NISDNHGNYYNKDELKKFLDVAKNTNLKKYALFRLLAYSGMRIGECLALTWHDLD 223

Query: 183 DDQSTLRIQGK---------------GDKIRIVPLLPSVRKAILEYYDLCPFDL------ 221
              +T+ I                      R++ L     + +  +       L      
Sbjct: 224 YKNNTIAINKTLARTNNGIKIQTPKTKASNRVISLDNETIQVLKMWQLEQRKQLLKVGIN 283

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
            ++ +  +F   +   +     +  I+Q+ +  G+  S T H  RH+ AT L ++G D++
Sbjct: 284 AMDSKQLIFSNGKNSFIIVPTVRLAIKQIAKKAGIH-SITTHGFRHTHATLLFASGLDIK 342

Query: 282 SIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQT 317
            +Q+ LGH  + TT  IYT+   K   D + + + + 
Sbjct: 343 QVQARLGHSNVQTTLNIYTHA-MKEKQDKIGDEFAKY 378


>gi|258616081|ref|ZP_05713851.1| phage integrase family site specific recombinase [Enterococcus
           faecium DO]
 gi|293563861|ref|ZP_06678293.1| phage integrase family protein [Enterococcus faecium E1162]
 gi|294623266|ref|ZP_06702131.1| phage integrase family protein [Enterococcus faecium U0317]
 gi|291597294|gb|EFF28480.1| phage integrase family protein [Enterococcus faecium U0317]
 gi|291604190|gb|EFF33692.1| phage integrase family protein [Enterococcus faecium E1162]
          Length = 361

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 53/318 (16%), Positives = 118/318 (37%), Gaps = 42/318 (13%)

Query: 18  RQNWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
            + +L     E     L   T ++Y    +        +    +  + +  LS   ++ F
Sbjct: 47  VKQYLDFWMEEYVKLNLKYNTYENYRFTIK-------NHINGYLGKKKLTDLSPALLQNF 99

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQ 133
           I+    +    +++  + S +K+ L        +  ++ +L ++  K     P    + +
Sbjct: 100 INAEFKKGYSKKTMTITHSVLKNALNMAVYPWGLIKQNPMLYVKIPKYEAR-PTTKKDLK 158

Query: 134 ALTL--VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            ++L   D++L  T     +        L + +  G+R+ E   LT  ++     T+ ++
Sbjct: 159 IISLEDFDHMLEITPEGHPFYIP-----LNIGFYTGMRVGEVCGLTWDDVDFSNGTITVE 213

Query: 192 GKG---------------DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
            +                   R + +  ++   + ++      +     +L +       
Sbjct: 214 KQMVKNDGAWVYGTPKTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCT 273

Query: 237 P-----LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
                 + P V +   R++   L L  +   H+LRH+ AT LL NG  ++ I   LGH R
Sbjct: 274 KEDGELVTPSVVKWNTRRISNALSLSFN--FHSLRHTHATLLLENGAKMKEISERLGHSR 331

Query: 292 LSTTQ-IYTNVNSKNGGD 308
           +S T   Y++V  K   +
Sbjct: 332 ISITMDTYSHVTDKMRNE 349


>gi|90962617|ref|YP_536533.1| Phage integrase [Lactobacillus salivarius UCC118]
 gi|90821811|gb|ABE00450.1| Phage integrase [Lactobacillus salivarius UCC118]
          Length = 381

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 112/277 (40%), Gaps = 30/277 (10%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           + +++    + F++  +T K    +   SLS +K+ L Y  +  +   + +L +   KK 
Sbjct: 110 VDKITLRHCQDFVN--KTFKKAPVAYVYSLSIVKNTLDYALRLGMIESNPMLYVIKPKKQ 167

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            S+    ++K       + L       K    +   +  LL   G+RI E L+LT  ++ 
Sbjct: 168 ASI----SDKHDNYYNKDELKKFLDVAKDTSLKKYTLFRLLAYSGMRIGECLALTWHDLD 223

Query: 183 DDQSTLRIQGK---------------GDKIRIVPLLPSVRKAILEYYDLCPFDL------ 221
              +T+ I                      R++ L     + +  +       L      
Sbjct: 224 YKNNTIAINKTLARTNNGIKIQTPKTKASNRVISLDNETIQVLKMWQLEQRKQLLKVGIN 283

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
            ++ +  +F   +   +     +  I+Q+ +  G+  S T H  RH+ AT L ++G D++
Sbjct: 284 AMDSKQLIFSNGKNSFIIVPTVRLAIKQIAKKAGIH-SITTHGFRHTHATLLFASGLDIK 342

Query: 282 SIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQT 317
            +Q+ LGH  + TT  IYT+   K   D + + + + 
Sbjct: 343 QVQARLGHSNVQTTLNIYTHA-MKEKQDKIGDEFAKY 378


>gi|146300455|ref|YP_001195046.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146154873|gb|ABQ05727.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 386

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 55/272 (20%), Positives = 106/272 (38%), Gaps = 24/272 (8%)

Query: 48  IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR--SLSG---IKSFLKYL 102
            F AF     +T + +      + + ++ K + +K    ++ R  +LS    +K+ LK  
Sbjct: 130 HFEAFLKGNDLTFKEVTVTLIEDYKEYLLKAKNRKNNSSTIARNTALSYHNKLKTTLKNA 189

Query: 103 KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
            K +         + ++K+  S    L  K+A  L       T    + +   +   +  
Sbjct: 190 YKEQKLRTDINAGIDSIKEQESQRNFLTLKEAKKLF-----STPCPKRIVHQISKFSVL- 243

Query: 163 LYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
               GLR S+   LT + IM  +     I+ K  K   +  +P   +A         +++
Sbjct: 244 ---TGLRYSDIAKLTWEEIMFIEDDGYYIRFKQKKTEGLQTIPISNEA---------YEI 291

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
                 P+  G     L      R +       G+    T H  RH++AT  +++G D+ 
Sbjct: 292 LAEKAQPVKTGKVFFDLKKWDVDRALPVWIARAGIVKHITFHCFRHTYATLQIASGTDIF 351

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           ++  ++GH  + TTQIYT +  +   +    I
Sbjct: 352 TVSKMMGHKSIKTTQIYTKIIDEKKREASQRI 383


>gi|295840979|dbj|BAJ06861.1| integron integrase intI [uncultured bacterium]
          Length = 423

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 104/283 (36%), Gaps = 59/283 (20%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSL 88
             S  T +SY+    +FL F A        +  +   +   I  F+     ++     + 
Sbjct: 162 HYSFQTEKSYKAWLVRFLKFHA--------VDNLADFTELHITRFLEHLVISRHASSSTQ 213

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
             +L+ +  F K++  R+ + +   +     KK   LP  L++ +  TL  ++       
Sbjct: 214 SYALNALVYFYKHVLDREPSED---IQFVRSKKPKRLPVVLSQDEISTLFAHIR------ 264

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVR 207
               +     +  LLYGCG+R+ E + +   ++  D   L I+G KG K R+ P+   + 
Sbjct: 265 ----NPTFLLMANLLYGCGMRLMECVRIRILDVDFDYQQLLIRGAKGKKDRVAPIPAKLV 320

Query: 208 K----------------------------AILEYYDLCPFDLNLNIQLPLFR-------- 231
                                        A+   Y     +       P  R        
Sbjct: 321 TTLKSHLTGVRNMHDEDLAQGYGSVYLPGALARKYPNAKKEFRWQFVFPSVRVSADPRSG 380

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
            IR   ++    Q ++++     G+    + HTLRHSFATHLL
Sbjct: 381 EIRRHHIHQTGLQHHLKRAADSSGINKKVSCHTLRHSFATHLL 423


>gi|50915150|ref|YP_061122.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes MGAS10394]
 gi|50904224|gb|AAT87939.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes MGAS10394]
          Length = 387

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 55/318 (17%), Positives = 128/318 (40%), Gaps = 35/318 (11%)

Query: 22  LQNLEIERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           L +L +E    KLT++  +Y+    +    L  +    +    + +++ ++I+  I++  
Sbjct: 79  LSHLWLETY--KLTVKPQTYDATVTR----LNRHIMPTLGNMKVDKITASDIQMLINRLS 132

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK---SNSLPRALNEKQALT 136
              +   +++   S I+  L+      +   ++  ++   +K   +    + ++     +
Sbjct: 133 KYYVNYTAVR---SVIRKVLQQGVLLGLIDYNSARDIILPRKQPNAKKKVKFIDPSDLKS 189

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
            +++  L TS   ++    ++ +  LL   GLRI EA +L   +I  +  T+ I    +K
Sbjct: 190 FLEH--LETSQHKRYNLYFDAVLYQLLLSTGLRIGEACALEWGDIDLENGTIAINKTYNK 247

Query: 197 I-------------RIVPLLPSVRKAILEYYDLCPFDLN---LNIQLPLFRGIRGKPLNP 240
                         R++ +     +++  Y        N     +   +F     K  N 
Sbjct: 248 NLKFLSTAKTQSGNRVISVDKKTLRSLKLYQMRQRQLFNEVGARVSEVVFATPTRKYFNA 307

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYT 299
            V Q  +    +  G+    T H  RH+ A+ LL+ G   + +Q  LGH  +S T   Y 
Sbjct: 308 SVRQSALDTRCKEAGIER-FTFHAFRHTHASLLLNAGISYKELQYRLGHANISMTLDTYG 366

Query: 300 NVNSKNGGDWMMEIYDQT 317
           +++     + ++  Y++ 
Sbjct: 367 HLSKDKEKEAVL-YYEKA 383


>gi|320107543|ref|YP_004183133.1| integrase family protein [Terriglobus saanensis SP1PR4]
 gi|319926064|gb|ADV83139.1| integrase family protein [Terriglobus saanensis SP1PR4]
          Length = 419

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 54/282 (19%), Positives = 105/282 (37%), Gaps = 28/282 (9%)

Query: 48  IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI 107
           I+L  +   K   + +  +   E+  ++            ++  +S +     +  + + 
Sbjct: 100 IYLTNHIAPKWGEKWLSDVRTVEVEEWLHSLPYAPATKSKIRNIMSAV---FNHAIRYEW 156

Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           T  + I  +R   K    P  L   +   LV+ + L              A++ L    G
Sbjct: 157 THRNPITKVRASSKRLREPDVLTPGEFSALVEELPLRV-----------KAMVILAGSTG 205

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRI-----------VPLLPSVRKAILEYYDL 216
           LR SE ++LT +++      + +     + R            VPL  SV + +  +   
Sbjct: 206 LRRSELVALTWRDVDPLLMQINVLRSCVRGRFGDTKTEASRKPVPLHTSVIECLDVWRKE 265

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVF-QRYIRQLRRYLGLP-LSTTAHTLRHSFATHLL 274
             ++   +   P  R     P+ P +  ++ IR       +       H+ RHS AT+L 
Sbjct: 266 SRYNGEDDFLFPSVRNEGRTPVTPDMILKKIIRPALVRAKITGKRIGWHSFRHSLATNLR 325

Query: 275 SNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYD 315
           + G DL++ Q +L H     T  IYT   S N  +   ++ +
Sbjct: 326 AAGADLKTAQELLRHANSRITLDIYTRAISANKREANNKVME 367


>gi|266622036|ref|ZP_06114971.1| integrase [Clostridium hathewayi DSM 13479]
 gi|288866275|gb|EFC98573.1| integrase [Clostridium hathewayi DSM 13479]
          Length = 406

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 62/383 (16%), Positives = 124/383 (32%), Gaps = 87/383 (22%)

Query: 12  FELLKERQNWLQNLEIERG--------------------------LSKLTLQSYECDTRQ 45
           FE L E +NWL +   E                            L+  T ++Y+     
Sbjct: 38  FETLPEAKNWLADARYEERHNLIVTSPDMTVDKWFTYWIENIVCDLAPNTKRNYQ----- 92

Query: 46  FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR 105
                 +  +  I    I  +     +A +++  T      +++++   + + LK     
Sbjct: 93  --ERYKWNIQPVIGAMCIADVKPMHCKAVLNRMET-TYAGSTIRQAYITMGTMLKSAVMN 149

Query: 106 KITTESNILNMRNLKKSNSL--PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
            I  +  +  +R  K   ++   + L  ++    ++                N     LL
Sbjct: 150 DIIAKHPMNGVRYTKPVRAVDDIKYLTVEEQEKFLEAAARS----------HNYRQYALL 199

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQG-----------------KGDKIRIVPLLPSV 206
              GLR +E + LT   I     TL +                        R +PL    
Sbjct: 200 LETGLRTAEMIGLTWDAIDWKNRTLTVNKSLEYRHSQGYWRAGPPKTQKSYRTIPLTDKA 259

Query: 207 RKAILEYYDLCPFDLNLNI--------------------QLPLFRGIRG-KPLNPGVFQR 245
              +   YD      +                       +  +F   R  +P     +  
Sbjct: 260 YSILKSCYDEKDSRKSSETLSQVLEYIDSRTGENKCLIMRDLVFVNWRTGEPAKNSSYDT 319

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           ++ +L    G+      H LRH++AT  +  G   + +Q +LGH  + TT   Y +V  +
Sbjct: 320 HLYKLCDEAGI-KRFCMHALRHTYATRAIERGVQPKVLQQLLGHASIKTTMDRYVHVTDE 378

Query: 305 NGGDWMMEIYDQTHPSITQKDKK 327
           +  + + + + Q  P +++K +K
Sbjct: 379 SLVNAIRQ-FQQATPPVSKKGRK 400


>gi|217032607|ref|ZP_03438095.1| hypothetical protein HPB128_11g1 [Helicobacter pylori B128]
 gi|298736017|ref|YP_003728542.1| hypothetical protein HPB8_521 [Helicobacter pylori B8]
 gi|216945677|gb|EEC24304.1| hypothetical protein HPB128_11g1 [Helicobacter pylori B128]
 gi|298355206|emb|CBI66078.1| conserved hypothetical protein [Helicobacter pylori B8]
          Length = 355

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 123/283 (43%), Gaps = 16/283 (5%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           K T+        Q L     Y ++ + +++ R LS  ++  F+ +   Q     S+ + +
Sbjct: 69  KHTI------MMQGLFLFFNYFKDNLKLRSFRMLSEEQVINFLFEL-AQNRKTSSMAKYV 121

Query: 93  SGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
             ++ F  Y  +KR+ + +  + N+   K   SLPR LN+K   + +  +L +    +  
Sbjct: 122 MYLRQFFDYLDRKRRYSFDFTLKNLAFAKTKESLPRHLNDKDLKSFLKTLLGYKPATS-- 179

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKA 209
            + RN  IL ++   GLR  E L++  ++I  ++   ++ IQGKG K R   +  S+ + 
Sbjct: 180 FEKRNKCILLIVILGGLRKCEVLNIELKHIQVEEQNYSILIQGKGRKERKAYIKKSLLEP 239

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL----STTAHTL 265
            L  +    + L       LF+  + K  N      +I  + +   +       T  H  
Sbjct: 240 SLNAWLSDEYRLKYFNGAYLFKKDKQKAQNSLTLYNFIPLIFKLAQIKHYKQYGTGLHLF 299

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           RHSFAT +     DL      LGH  L +T+IY +   ++   
Sbjct: 300 RHSFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHNKK 342


>gi|38491991|gb|AAR22338.1| integrase/recombinase [Helicobacter pylori]
          Length = 355

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 123/283 (43%), Gaps = 16/283 (5%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           K T+        Q L     Y ++ + +++ R LS  ++  F+ +   Q     S+ + +
Sbjct: 69  KHTI------MMQGLFLFFNYFKDNLKLRSFRMLSEEQVINFLFEL-AQNRKPSSMAKYV 121

Query: 93  SGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
             ++ F  Y  +KR+ + +  + N+   K   SLPR LN+K   + +  +L +    +  
Sbjct: 122 MYLRQFFDYLDRKRRYSFDFTLKNLVFAKTKESLPRHLNDKDLKSFLKTLLDYKPATS-- 179

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKA 209
            + RN  IL ++   GLR  E L++  ++I  ++   ++ IQGKG K R   +  S+ + 
Sbjct: 180 FEKRNKCILLIVILGGLRKCEVLNIELKHIQVEEQNYSILIQGKGRKERKAYIKKSLLEP 239

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL----STTAHTL 265
            L  +    + L       LF+  + K  N      +I  + +   +       T  H  
Sbjct: 240 SLNAWLSDEYRLKYFNGAYLFKKDKQKAQNSLTLYNFIPLIFKLAQIKHYKQYGTGLHLF 299

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           RHSFAT +     DL      LGH  L +T+IY +   ++   
Sbjct: 300 RHSFATLIYQEAQDLVLTSRALGHSSLLSTKIYIHTTQEHNKK 342


>gi|29376760|ref|NP_815914.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|227517099|ref|ZP_03947148.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX0104]
 gi|227555253|ref|ZP_03985300.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
 gi|255975282|ref|ZP_05425868.1| integrase [Enterococcus faecalis T2]
 gi|307285277|ref|ZP_07565421.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|29344225|gb|AAO81984.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
 gi|227075470|gb|EEI13433.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX0104]
 gi|227175635|gb|EEI56607.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
 gi|255968154|gb|EET98776.1| integrase [Enterococcus faecalis T2]
 gi|306502854|gb|EFM72116.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|315573394|gb|EFU85585.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309B]
 gi|315581045|gb|EFU93236.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309A]
          Length = 369

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 53/318 (16%), Positives = 108/318 (33%), Gaps = 33/318 (10%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           +F L +  + WL  ++ E  LS  T  SY           + Y  + +    + ++    
Sbjct: 65  AFTLNEWIEQWLVIVKKEVKLS--TFASYSYKL-------SNYVLKTMGDSALNEIDDLR 115

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +   +     Q +   ++      +   L +  K K    +    +   K      RAL+
Sbjct: 116 LNKLVEDLIAQGLSKSTICVIFGILSRALNHAVKAKHLKSNPCSTISLPKPKRRHIRALD 175

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            ++   L +    +   +           + +    GLRI E  +L  ++I   + T+ +
Sbjct: 176 IEEQKKLENVAYKNPQQQG--------LSVIVALHTGLRIGELAALRWEDINFKKDTIHV 227

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--------------NLNIQLPLFRGIRGK 236
           +    ++ +     S +        +    +                + Q         K
Sbjct: 228 KHTFQRVSVSSFGESTQLYYDCTKTINSERIIPMSNTVKNALKCQKEHSQGKFVFSRNNK 287

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT- 295
           P  P +   Y  +LR  + L      H LRH+FAT  L +  D+ S+ ++LGH     T 
Sbjct: 288 PCEPRLLTYYFHKLRDKVQLDK-VHFHQLRHTFATRCLESTSDIVSVSALLGHSSTQMTL 346

Query: 296 QIYTNVNSKNGGDWMMEI 313
            IY +   +     +  +
Sbjct: 347 DIYADSLLEQRIKAIKRM 364


>gi|302186394|ref|ZP_07263067.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Pseudomonas syringae pv. syringae 642]
          Length = 321

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 62/295 (21%), Positives = 119/295 (40%), Gaps = 18/295 (6%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            ++ K  + +L  L      S+LT+     D    L          I       L    +
Sbjct: 20  PDVNKPLRLYLDRLAPS---SRLTMTYVLQDAADRLGMADV----DIHDIPWHTLQPGHV 72

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRAL 129
            A ++  R       +    ++ I+  +    +  + +   +L +R++K      L +  
Sbjct: 73  TALVATLRQDDYAPNTTSLYVNAIRGVMNEAWRHDLISHDQLLKIRSIKPVSGTRLVKGR 132

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           N +   TL+  ++   + + +    R++AI+ +LYG G+R SE+++L    I   + +LR
Sbjct: 133 NIR--RTLIRELMEACAADPRPQGRRDAAIIAILYGSGMRKSESVNLDLSQIDFAERSLR 190

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNP-GVFQR 245
           + GKG+K  I        KA+ ++ +L    L        F   R  RG  +    + + 
Sbjct: 191 VLGKGNKQLIKYAPEWAFKALNDWLELRRSCLQPGQGDDPFLFNRIRRGSHITRDRITKH 250

Query: 246 YIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            I  + +  G  + ++   H  R SF T ++    DL   Q +  H  +STT  Y
Sbjct: 251 AIYFIAKQRGRQVGVNIMPHDFRRSFITRVIEE-FDLSIAQKLAHHTHISTTASY 304


>gi|293413559|ref|ZP_06656208.1| type 1 fimbriae regulatory protein FimB [Escherichia coli B185]
 gi|291433617|gb|EFF06590.1| type 1 fimbriae regulatory protein FimB [Escherichia coli B185]
          Length = 206

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 69/174 (39%), Gaps = 7/174 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L + +   L+D      + ++     RN  ++ + +  G R SE L L   +I     
Sbjct: 23  KYLTQDEVYRLMD------AAQSMSFPERNRCLIMMAFIHGFRASELLDLRLSDIDASGK 76

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            L I+  K       PLLP     I  +        N      LF   + +P++   F  
Sbjct: 77  QLNIRRIKNGFSTTHPLLPDEYNLIKLWLKQRKLIENGVEGDWLFLSRKRRPISRQHFFS 136

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            IR+  R  GL +    H LRH+    L  NG D R +Q  LGH  +  T  YT
Sbjct: 137 IIREAGRRAGLAVKAHPHMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYT 190


>gi|329314712|gb|AEB89125.1| Integrase [Staphylococcus aureus subsp. aureus T0131]
          Length = 390

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 99/292 (33%), Gaps = 39/292 (13%)

Query: 53  YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
           +  E+   + I+ ++  E + F++    Q      +   ++      KY    K+     
Sbjct: 93  HAIERFNNKPIQTINKHEYQRFVNDISAQ-YSKNYVDSIIASTNMIFKYAYDMKLIRIMP 151

Query: 113 ILNMRNLKKSNSL---------PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
              ++  KK  S+          + L + +    ++    H S +  +       +   L
Sbjct: 152 SEGIKRPKKKISVEELEDTEIHKKFLEKDELFQFLEVAKNHHSPQNSFE------LFCTL 205

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP------------------LLPS 205
              G+R  E L+L   +I  + +T+ I                             + P 
Sbjct: 206 AYTGMRAGELLALKWSDIDFENNTINITKTYYNPNNNKKQFQILTPKTESSIGKISVDPH 265

Query: 206 VRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTT 261
           V K +  Y           + +    +F  + G PL     Q +I+ + +   +     +
Sbjct: 266 VIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYPLVIKKLQLWIKAILKKTDITNKQIS 325

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMME 312
            H+ RH+    L+  G  ++ IQ  L H  ++TT  IY  + +    D   +
Sbjct: 326 THSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKITNSYKKDASQK 377


>gi|329729089|gb|EGG65500.1| site-specific recombinase, phage integrase family [Staphylococcus
           epidermidis VCU144]
          Length = 391

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 46/313 (14%), Positives = 103/313 (32%), Gaps = 43/313 (13%)

Query: 36  LQSYECDTR----QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           ++ Y  D +    +       +  +    + I+ +   + + F+     Q      +   
Sbjct: 73  IKQYANDVKVSSVRAREKAIQHAIQHFNTKPIQTIKKHDYQRFVDDMSIQ-YSKNYVDSI 131

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL---------PRALNEKQALTLVDNVL 142
           ++      KY    K+     I  ++  KK  S+          + L + +    ++   
Sbjct: 132 VASTNMIFKYAYDMKLIRVLPIEGIKRPKKKVSVEELEDSEIHKKFLEKDELFQFLEVAK 191

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP- 201
            H S +  +       +   L   G+R  E L+L   +I  + +T+ I            
Sbjct: 192 NHHSPQNSFE------VFTTLAYTGMRAGELLALKWSDIDFENNTISITKTYYNPNNNKK 245

Query: 202 -----------------LLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPG 241
                            + P V + + +Y           + +    +F  + G PL   
Sbjct: 246 HYQILTPKTESSIGKISVDPHVIQLLKDYKVNVQDTWKNELYVDNNFVFTDVNGYPLVIK 305

Query: 242 VFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYT 299
               +I+ + +   +     + H+ RH+    L+  G  ++ IQ  L H  ++TT  IY 
Sbjct: 306 KLSTWIQAIMKKTDITNKHISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYA 365

Query: 300 NVNSKNGGDWMME 312
            + +    D   +
Sbjct: 366 KITNSYKKDASQK 378


>gi|186896896|ref|YP_001874008.1| integrase family protein [Yersinia pseudotuberculosis PB1/+]
 gi|186699922|gb|ACC90551.1| integrase family protein [Yersinia pseudotuberculosis PB1/+]
          Length = 351

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 55/270 (20%), Positives = 106/270 (39%), Gaps = 29/270 (10%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYL 102
             F   +      + + Q   Q     ++  +++  R  K+  R+L   L+  ++    L
Sbjct: 91  NHFYECMGKPLATEFSAQLFSQYREKRLKGELARSTRVTKVAPRTLNLELAYFRAMFNEL 150

Query: 103 KKRK-ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
           ++       + I ++R  K   S    L   Q   L+D     +           + ++ 
Sbjct: 151 ERLGEWKLLNPIKSVRAFKTEESEMAFLTRDQIELLLDECKKSSIE-------CLATVVK 203

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           +    G R SEA  L    + + + T  I+ KG K R VP+   +             +L
Sbjct: 204 ICLSTGARWSEAEGLKLSQLTEHKITF-IKTKGRKNRTVPISKELYD-----------EL 251

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
               +  LF     +      F+R ++  R  + LP    +H LRH+FA+H +  GG++ 
Sbjct: 252 PKKGKSGLFTACYAE------FRRALK--RSEIELPPGQLSHVLRHTFASHFMMKGGNIL 303

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            +Q ILGH  +  T  Y++ +  +  + + 
Sbjct: 304 VLQRILGHTDIKMTMRYSHFSPDHLDEALR 333


>gi|159904528|ref|YP_001548190.1| integrase family protein [Methanococcus maripaludis C6]
 gi|159886021|gb|ABX00958.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 322

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 57/302 (18%), Positives = 121/302 (40%), Gaps = 16/302 (5%)

Query: 20  NWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           +W+     ER   G+   T+++   D  +  I+L F  E     +    +   +   F +
Sbjct: 25  SWVSKFVEEREFDGIKPRTIEN---DVSRLKIYLDFINERLQ--KDADSVENHDFIKFFN 79

Query: 77  KR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
              + +++   +  R  + +K F K +K      +    ++   + S    +  +     
Sbjct: 80  YLDKERRLSKNTQNRYFNLLKVFYKIMKLNNF-KDFEEESLDRKRFSRFEVKHYDAIDLD 138

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKG 194
           TL + +L      T     R+  I+ LL+  G R+SE L+L  ++   ++ + +++  KG
Sbjct: 139 TL-NLILTGVVKSTGRSKVRDGIIIRLLWDTGCRLSEILNLRYKDCDFEEGSFKLRNTKG 197

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRY 253
              R+V         + +Y     +  + +       G + +  +   VF + I++L+  
Sbjct: 198 KVERVVVCTNETLNILTQYIKHNVYQGHEDRIFQSTTGGKVERSHMSKVFAKQIKKLQDQ 257

Query: 254 --LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             +        H+LRH  A  LL  G  +  ++  LGH  L TT  Y + + +     + 
Sbjct: 258 GLISPNRRLVIHSLRHGRAVDLLEKGMPIDIVKEYLGHASLETTLFYAH-SRERKDKMLK 316

Query: 312 EI 313
           +I
Sbjct: 317 DI 318


>gi|319939111|ref|ZP_08013475.1| tyrosine recombinase xerS [Streptococcus anginosus 1_2_62CV]
 gi|319812161|gb|EFW08427.1| tyrosine recombinase xerS [Streptococcus anginosus 1_2_62CV]
          Length = 356

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 62/323 (19%), Positives = 116/323 (35%), Gaps = 45/323 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--- 81
            S  TL  Y  +  +F  ++            +I +  +  ++  ++ AFI   R +   
Sbjct: 33  YSFTTLYEYLKEYDRFFHWILDSGIADGSQIAEIPLSVLENMTKKDMEAFILYLRERPLL 92

Query: 82  -------KIGDRSLKRSLSGIKSFLKYLKKRKITTE-------SNILNMRNLKKSNSLP- 126
                   +   ++ R+LS + S  KYL +             + +  +   KK  +L  
Sbjct: 93  NANTTQNGVSQTTINRTLSALSSLYKYLTEEVENENGEPYFYRNVMKKVSTKKKRETLAA 152

Query: 127 RALNEKQALTLVDN--VLLHTSHETKWIDARNSA-------------ILYLLYGCGLRIS 171
           RA N KQ L L +     L+   E    +  N A             I+ LL   G+R+S
Sbjct: 153 RAENIKQKLFLGEETEQFLNYIDEEYPKNLSNRALSSFEKNKERDLAIIALLLASGVRLS 212

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLF 230
           EAL+L  +++      + +  KG K   V +    +  +  Y ++             LF
Sbjct: 213 EALNLDLKDLNLKMMVIEVTRKGGKRDSVNVAAFAKAYLERYLEVRSKRYKAEKSDTALF 272

Query: 231 RGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                     ++    ++ + +        +  T H LRH+ AT L         +   L
Sbjct: 273 LTEYRGIPNRIDASSVEKMVAKYSE--DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQL 330

Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310
           GH     T +YT++ +    + +
Sbjct: 331 GHASTQVTDLYTHIVNDEQKNAL 353


>gi|284048465|ref|YP_003398804.1| integrase family protein [Acidaminococcus fermentans DSM 20731]
 gi|283952686|gb|ADB47489.1| integrase family protein [Acidaminococcus fermentans DSM 20731]
          Length = 430

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 46/316 (14%), Positives = 125/316 (39%), Gaps = 40/316 (12%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + L +++ +   TL +Y               +E  + + I ++  ++ + ++ K +++ 
Sbjct: 94  RYLLLKKSVKPNTLTNYRFVVNAL-------KKEPFSQKAIGKVKMSDAKLWLVKLQSEG 146

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLKKSNSLPR-ALNEKQALTLVDN 140
               S+      ++   +     +I   +     ++ +  ++S+ R AL+++     +D 
Sbjct: 147 KSYSSIHSIRGVVRPAFQMAVDDEILWRNPFNFELKEVLINDSVRREALSKRDMRIFLDF 206

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---------- 190
           +   + ++  +        +++L+  GLR+SE   LT  +I  ++ T+ +          
Sbjct: 207 IKNDSHYKRYYEG------IFILFHTGLRVSEFCGLTVNDIDLEKRTINVDKQLQKGNGK 260

Query: 191 -----QGKGDKIRIVPLLPSVRKA----ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
                       R++P+   V +     +          +   +   LF  + G P    
Sbjct: 261 YYILSTKTKAGARLLPMTDEVYQCFAAILERRRPPKVEPIIDGVGKFLFYDVNGHPTVAL 320

Query: 242 VFQRYIRQLRRYLG-LPL----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT- 295
            ++ Y + + R    +        T H  RH++ T++  +G   +++Q ++GH  +S T 
Sbjct: 321 HWEHYFKLIVRKHNSIYKYQLPRITPHVCRHTYCTNMALSGVSAKTLQYLMGHSDISITL 380

Query: 296 QIYTNVNSKNGGDWMM 311
            +YT++   +    + 
Sbjct: 381 NVYTHIKFDDAQKEVA 396


>gi|261248380|emb|CBG26217.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
          Length = 340

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 68/334 (20%), Positives = 120/334 (35%), Gaps = 45/334 (13%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDT--------RQFLIFLAFYTEEKIT 59
           E ++FE  K +  W +  E  R L +L    Y            R+  +  AF    +  
Sbjct: 34  EALAFEQHKIQHPWQEEKEDRRSLKELIDSWYSAHGITLKDGEKRKLAMHHAFDCMGEPL 93

Query: 60  IQTIRQLSYTEIR------AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESN 112
            +      ++  R       +    R +++  R+L   L+  ++    L +      E+ 
Sbjct: 94  ARDFDAQMFSRYREKRLKGDYARSNRVKEVSPRTLNLELAYFRAVFNELNRLGEWKGENP 153

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           + NMR  +        L ++Q   L+D    H   +         +++ +    G R SE
Sbjct: 154 LKNMRPFRTEEMEMAWLTKEQIAALLDECKRHEHPDL-------VSVVKICLATGARWSE 206

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
           A  L    +   + T     KG K R VP+   + + +                  LF+ 
Sbjct: 207 AEGLKKSQLSKYKITYN-YTKGKKNRTVPISKELYEEL---------PAKNKEHGSLFQN 256

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                      QR        + LP     H LRH+FA+H + NGG++  +Q +LGH  +
Sbjct: 257 --CYGAFRSALQRT------NIELPAGQLTHVLRHTFASHFMMNGGNILVLQRVLGHTDI 308

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
             T  Y +    +  D +     + +P  T  DK
Sbjct: 309 KMTMRYAHFAPDHLEDAV-----KLNPLATSGDK 337


>gi|26246328|ref|NP_752367.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli CFT073]
 gi|91209384|ref|YP_539370.1| type 1 fimbriae regulatory protein FimX [Escherichia coli UTI89]
 gi|117622590|ref|YP_851503.1| hypothetical protein APECO1_1681 [Escherichia coli APEC O1]
 gi|218557234|ref|YP_002390147.1| DNA recombinase [Escherichia coli S88]
 gi|237707693|ref|ZP_04538174.1| type 1 fimbriae regulatory protein fimB [Escherichia sp. 3_2_53FAA]
 gi|26106726|gb|AAN78911.1|AE016756_94 Type 1 fimbriae Regulatory protein fimB [Escherichia coli CFT073]
 gi|91070958|gb|ABE05839.1| type 1 fimbriae regulatory protein FimX [Escherichia coli UTI89]
 gi|115511714|gb|ABI99788.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|218364003|emb|CAR01668.1| Putative DNA recombinase similar to Type 1 fimbriae Regulatory
           proteins [Escherichia coli S88]
 gi|226898903|gb|EEH85162.1| type 1 fimbriae regulatory protein fimB [Escherichia sp. 3_2_53FAA]
          Length = 200

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 45/174 (25%), Positives = 69/174 (39%), Gaps = 7/174 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L + +   L+D      + ++     RN  ++ + +  G R SE L L   +I     
Sbjct: 17  KYLTQDEVYRLMD------AAQSMSFPERNRCLIMMAFIHGFRASELLDLRLSDIDASGK 70

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            L I+  K       PLLP     I  +        N      LF   + +P++   F  
Sbjct: 71  QLNIRRIKNGFSTTHPLLPDEYNLIKLWLKQRKLIENGVEGDWLFLSRKRRPISRQHFFS 130

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            IR+  +  GL +    H LRH+    L  NG D R +Q  LGH  +  T  YT
Sbjct: 131 IIREAGKRAGLAVKAHPHMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYT 184


>gi|237741434|ref|ZP_04571915.1| site-specific recombinase [Fusobacterium sp. 4_1_13]
 gi|237745172|ref|ZP_04575653.1| site-specific recombinase [Fusobacterium sp. 7_1]
 gi|294785953|ref|ZP_06751241.1| site-specific recombinase, phage integrase family [Fusobacterium
           sp. 3_1_27]
 gi|229429082|gb|EEO39294.1| site-specific recombinase [Fusobacterium sp. 4_1_13]
 gi|229432401|gb|EEO42613.1| site-specific recombinase [Fusobacterium sp. 7_1]
 gi|294487667|gb|EFG35029.1| site-specific recombinase, phage integrase family [Fusobacterium
           sp. 3_1_27]
          Length = 396

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 70/318 (22%), Positives = 126/318 (39%), Gaps = 42/318 (13%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           ++ +++  +L  LE     SK T+Q  +Y+    Q  I   F++++ +    +  ++   
Sbjct: 74  KIEEQKIKFLDFLEQSITNSKNTIQYPTYKSYKDQQRIIEKFFSQKNL---DLEAVTVAN 130

Query: 71  IRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           I  F +     +K  + ++    + ++        RK+  E+ +L +   KK   +    
Sbjct: 131 ILDFYNHLSIVRKNTNNTIIHYHALLRKTFTEAHIRKLIKENIMLEIPRPKKEKYISEVF 190

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           N K+  T ++ +  H               L L    G R SE L L    I  D +T+ 
Sbjct: 191 NLKEINTFLNYIKGHKFELE----------LNLALFYGFRRSELLGLRFSVIDFDNNTIL 240

Query: 190 IQGKG-----------------DKIRIVPLLPSVRKAILEYYDLCPFDLN-------LNI 225
           +  K                     RI+PLL S+++ I++  +    D N          
Sbjct: 241 VNTKITSSEEEKLVAKQKMKNDSSYRIMPLLASIKELIIQRMERIKKDKNFFKSSYTKKW 300

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
           +  +  G  G+ + P    +  R+L +  GL      H LRHS AT L      L+ IQ 
Sbjct: 301 EGFICVGEDGELIKPDRVTKTFRRLIKECGL-KKIRLHDLRHSCATLLYEQDIQLKDIQM 359

Query: 286 ILGHFRLSTTQ-IYTNVN 302
            LGH  + TT  IY++ +
Sbjct: 360 WLGHSDIQTTANIYSHFD 377


>gi|56392785|gb|AAV87153.1| integrase [Streptococcus pyogenes]
          Length = 387

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 55/318 (17%), Positives = 128/318 (40%), Gaps = 35/318 (11%)

Query: 22  LQNLEIERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           L +L +E    KLT++  +Y+    +    L  +    +    + +++ ++I+  I++  
Sbjct: 79  LSHLWLETY--KLTVKPQTYDATVTR----LNRHIMPTLGNMKVDKITASDIQMLINRLS 132

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK---SNSLPRALNEKQALT 136
              +   +++   S I+  L+      +   ++  ++   +K   +    + ++     +
Sbjct: 133 KYYVNYTAVR---SVIRKVLQQGVLLGLIDYNSARDIILPRKQPNAKKKVKFIDPSDLKS 189

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
            +++  L TS   ++    ++ +  LL   GLRI EA +L   +I  +  T+ I    +K
Sbjct: 190 FLEH--LETSQHKRYNLYFDAVLYQLLLSTGLRIGEACALEWGDIDLENGTIAINKTYNK 247

Query: 197 I-------------RIVPLLPSVRKAILEYYDLCPFDLN---LNIQLPLFRGIRGKPLNP 240
                         R++ +     +++  Y        N     +   +F     K  N 
Sbjct: 248 NLKFLSTAKTQSGNRVISVDKKTLRSLKLYQMRQRQLFNEVGARVSEVVFATPTRKYFNA 307

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYT 299
            V Q  +    +  G+    T H  RH+ A+ LL+ G   + +Q  LGH  +S T   Y 
Sbjct: 308 SVRQSALDTRCKEAGIER-FTFHAFRHTHASLLLNAGISYKELQYRLGHANISMTLDTYG 366

Query: 300 NVNSKNGGDWMMEIYDQT 317
           +++     + ++  Y++ 
Sbjct: 367 HLSKGKEKEAVL-YYEKA 383


>gi|323170034|gb|EFZ55690.1| integrase [Escherichia coli LT-68]
          Length = 285

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 103/257 (40%), Gaps = 29/257 (11%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNIL 114
           E +    + +L+ T +      R  Q I   ++ R +  + +    L        ++ + 
Sbjct: 50  EAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAMFTALISSGHFLNDNPVQ 109

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            ++ +K +      L++ + + L+D  L     E           + +L   G R  E  
Sbjct: 110 GLKGMKVNEREMGYLSKSECVQLLDA-LAENPDE--------RLAVEILLSTGARWGEVA 160

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +L  + ++  + T   + K  K R VP+  S+ + I                  +F    
Sbjct: 161 ALEQRRVLHCRITFS-KTKNSKNRTVPISESLFEKI-----------KKRGGKLVFPT-- 206

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              L+  + +  I+ +     +P     H LRH+FA+H + NGG++ ++Q ILGH ++ T
Sbjct: 207 ---LDYSLVRDVIKTVA--PDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQT 261

Query: 295 TQIYTNVNSKNGGDWMM 311
           T IY ++      D + 
Sbjct: 262 TMIYAHLAPDYLQDAVR 278


>gi|227494283|ref|ZP_03924599.1| possible site specific recombinase [Actinomyces coleocanis DSM
           15436]
 gi|226832017|gb|EEH64400.1| possible site specific recombinase [Actinomyces coleocanis DSM
           15436]
          Length = 286

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 63/295 (21%), Positives = 111/295 (37%), Gaps = 39/295 (13%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
                W   L+    LS  T+++     RQF  +       + T +T+ + S        
Sbjct: 23  APVDEWQSALKAA-QLSPNTIKTRVDRFRQFARWYEA-GPAECTTKTLMEYSAAH----- 75

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                 +    + +   + ++SF ++              +  +K S+  PR   +    
Sbjct: 76  ------EWSCETRRSVHATLQSFFRWFHGAGYADIDISAGLPKVKPSSPKPRPAPDSAVR 129

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGK 193
           + ++N              R   IL L    GLR  E + +  ++I++D    +LR+ GK
Sbjct: 130 SGLENG-----------GNREYFILSLAAYVGLRREEIVKVHSKDIIEDILGYSLRVHGK 178

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G+K RIVPL   + + ++                 L  G     ++     RY  +L   
Sbjct: 179 GNKERIVPLPELLARQVIAEC--------ARNAGYLLPGNIDGHMSA----RYAGKLATR 226

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
             LP   T H LRH F T   +   D+ ++Q ILGH   +TT+ Y  V +    +
Sbjct: 227 C-LPGDITLHMLRHRFGTVAYNRSKDIAAVQDILGHTNPATTRRYIAVENSRLRE 280


>gi|170696572|ref|ZP_02887694.1| integrase family protein [Burkholderia graminis C4D1M]
 gi|170138525|gb|EDT06731.1| integrase family protein [Burkholderia graminis C4D1M]
          Length = 389

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 61/334 (18%), Positives = 115/334 (34%), Gaps = 50/334 (14%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS--------------- 76
           S  TL+SY  +  + +++      + ++  ++ +  +     F++               
Sbjct: 58  SPHTLRSYRKEAVRLVLWATRTLGKPLS--SLTREDFLLYEQFLAAPTGDWADPMRPRRG 115

Query: 77  ---KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL--------NMRNLKKSNSL 125
              +     + +RS  ++L  +   L YL        + +           R  +    L
Sbjct: 116 GTRRLFDGPLSERSRHQALGIVSGLLSYLVSAGYLAGNPLALRRRTGAAARRTRRVERYL 175

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
             AL     L  V+    HT+ + +  +     ++ LLY  GLR+SEA      +    +
Sbjct: 176 DHAL-WDHVLASVEQWPRHTARDHQHYERC-RWLIRLLYHTGLRVSEAAHAKAADFYQRR 233

Query: 186 S--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPL 238
               L + GKG     VP+  ++      Y          +            G   + L
Sbjct: 234 GNWWLHVLGKGGAEGEVPVSAALMADFARYRVFHGLPPTPSGSERAAAVMSVTGDPQRHL 293

Query: 239 NPGVFQRYIRQLRRYLG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
            P      ++++ R                    + H LRHS A+H    G DLR IQ  
Sbjct: 294 TPAAVYLIVKEMFRRAADMLAPTDPAGAATLRRASTHWLRHSAASHQADAGTDLRFIQKN 353

Query: 287 LGHFRLSTTQIYTNV-NSKNGGDWMMEIYDQTHP 319
           + H  + TT IY +  + +   + + E  D + P
Sbjct: 354 MRHASIQTTGIYLHAEDDQRHAETVREDGDTSRP 387


>gi|17233092|ref|NP_490182.1| integrase/recombinase [Nostoc sp. PCC 7120]
 gi|17135614|dbj|BAB78160.1| integrase/recombinase [Nostoc sp. PCC 7120]
          Length = 342

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 57/296 (19%), Positives = 112/296 (37%), Gaps = 33/296 (11%)

Query: 20  NWLQNLEIER--GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            W++ LE  R   L+  + + YE + ++FL +   +  E         L    +  +   
Sbjct: 42  RWIKVLEFLRSTNLAPNSRKLYERELKRFLGWTQLHYHE---------LRPRHLGLYKEY 92

Query: 78  RRTQ-------KIGDRSLKRSLSGIKSFLKYLKKR--KITTESNILNMRNLKKSNSLPRA 128
            R +        +   S+   ++ +KSF  ++     +I T +  L ++  K      ++
Sbjct: 93  LRDEVKTDSGKPLSKASINAGVAALKSFFNWMCYTYPEIITTNPTLGIKLEKVPLPPAQS 152

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L ++Q   +   + L    + +     ++A++++L   GLR  E + L   +       L
Sbjct: 153 LTDEQMERVWSALELLGETKER-----DTALVHIL-SHGLRAGEIVQLNVGSFDGKLLFL 206

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRG----KPLNPGVF 243
               K ++ R+VPL    R  +  Y          LN   PL            L+    
Sbjct: 207 -PDTKTNEPRLVPLRKESRDVLEAYLRSRQQQGEELNSLTPLMISHHASYKGDRLSYHGI 265

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
              + ++  + G+      H  RH++AT LL  G D    + + GH      + YT
Sbjct: 266 YFAVEKIGEFAGIE-DLHPHQFRHTYATELLLLGVDPSHARKLTGHQSEKAFRRYT 320


>gi|288905286|ref|YP_003430508.1| tyrosine recombinase XerC [Streptococcus gallolyticus UCN34]
 gi|288732012|emb|CBI13577.1| putative tyrosine recombinase XerC [Streptococcus gallolyticus
           UCN34]
          Length = 356

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 66/357 (18%), Positives = 128/357 (35%), Gaps = 51/357 (14%)

Query: 1   MEGNNLPEIVSFELLKERQNW--LQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEE 56
           M+   L E +  + LKE   W  L   + +     S  TL  Y  + R+F  +L      
Sbjct: 1   MKREKLLEKI--DELKEIMPWYVLDYYQSKLSVPYSFTTLYEYLKEYRRFFEWLLDSGIS 58

Query: 57  KIT------IQTIRQLSYTEIRAFISKRRT----------QKIGDRSLKRSLSGIKSFLK 100
            +T      + T+  LS  ++ +FI   R           Q +   ++ R+LS + S  K
Sbjct: 59  DVTKIADVELTTLEHLSKKDMESFILYLRERPSLNTYSTKQGVSQTTINRTLSALSSLFK 118

Query: 101 YLKKRKITTESNILNMRNL---------------KKSNSLPRALNEKQALTLVDNVLLHT 145
           YL +            RN+               +  N   +     + +  +D +    
Sbjct: 119 YLTEEVEDENGEPYFYRNVMKKIATKKKKETLAARAENIKGKLFLGDETMAFIDYIDTEY 178

Query: 146 SHETKWIDA--------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            ++              R+ A++ LL   G+R+SEA++L  +++  +   + +  KG K 
Sbjct: 179 QNKLSHRALSSFQKNKERDLALIALLLASGVRLSEAVNLDLKDLNLNMMVIEVTRKGGKR 238

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIR---GKPLNPGVFQRYIRQLRRY 253
             V +    +  +  Y  +         Q   LF          ++    ++ + +  + 
Sbjct: 239 DSVNVANFAKPYLEAYLQIRAPRYKAEKQDQALFLTEYRGVPNRIDASSVEKLVAKYSQ- 297

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               +  T H LRH+ AT L         +   LGH     T +YT++ +    + +
Sbjct: 298 -DFKVRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNAL 353


>gi|294850413|ref|ZP_06791145.1| transposase transposon [Staphylococcus aureus A9754]
 gi|294822756|gb|EFG39193.1| transposase transposon [Staphylococcus aureus A9754]
          Length = 405

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 106/295 (35%), Gaps = 35/295 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +    ++K+  ++I  +  ++ + +  +         ++      +K+      +     
Sbjct: 110 MDILKKDKLGARSIDSIKPSDAKEWAIRMSENGFAYSTINNYKRSLKASFYIAIEDDYVR 169

Query: 110 ESNI-LNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     +  +   +++P+ AL E+Q   L+         +  +    +   + +L   G
Sbjct: 170 KNPFNFQLNTVIDDDTIPKIALAEEQVEKLLSF----AKADETYSKNHDE--ILILLKTG 223

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAIL 211
           LRISE   LT  ++  +   + +                    +  R +P++  V +A  
Sbjct: 224 LRISEFGGLTLPDLDFENRLINVDHQLLRDTESGYYIEMPKTKNGERQIPMVEEVYQAFK 283

Query: 212 EYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTA 262
                      + I      LF   +  P     +   ++ L +         LP   T 
Sbjct: 284 RVLANRKGGKCVEIDGYSDFLFLNRKDYPKTSDDYYSMLKHLVKKYNKYHEEKLP-HITP 342

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQ 316
           H LRH+F T+  + G + +++Q I+GH  ++ T   Y +    +    +  +  +
Sbjct: 343 HILRHTFCTNYANAGMNPKALQYIMGHANINMTLNYYAHAPFDSAVSELERLEKR 397


>gi|254520658|ref|ZP_05132714.1| phage integrase [Clostridium sp. 7_2_43FAA]
 gi|226914407|gb|EEH99608.1| phage integrase [Clostridium sp. 7_2_43FAA]
          Length = 400

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 54/333 (16%), Positives = 126/333 (37%), Gaps = 49/333 (14%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + WL+  ++       T+  Y      F I+  +     + +  ++ L    ++ + 
Sbjct: 85  QWIKMWLEEYKMNE-CRPSTIDRY------FGIYRNYIENTNLGVVKLKDLKPLTLQNYY 137

Query: 76  SKRRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++   +K     ++K     +   ++  +K ++   +  L +       +LP++  +++ 
Sbjct: 138 NELIKKKNKTTDTIKIINKVLSGGMRQAQKEQLILNNPCLFV-------TLPKSKVKEEV 190

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---- 190
           +T    +           D+R+  I  L  G GLR+ E L+L   +I    + +++    
Sbjct: 191 MTF--TMEEQRIFLNAIEDSRDRCIFNLALGSGLRLGELLALKWSDIDFSSNEVKVSKSV 248

Query: 191 --------------------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-- 228
                                      R +PL  +    +  + ++   +  +   +   
Sbjct: 249 KRVKCFDENTNTKTKIIEQLPKTRYSERKIPLPKATINELKRHKNIILQEKLMAGDIYID 308

Query: 229 ---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
              +F  + G  ++     +  + +     +P     H LRH++AT L  NG  L+ IQ 
Sbjct: 309 NNLVFPNVLGGYIDARNLTKRYKSILNKANIPYR-KFHALRHTYATRLFENGVSLKVIQV 367

Query: 286 ILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQT 317
           +LGH  +  T  IYT+V  K     + ++ D+ 
Sbjct: 368 LLGHSSMDITANIYTHVLPKEKIRAV-DVLDKC 399


>gi|317505107|ref|ZP_07963052.1| integrase [Prevotella salivae DSM 15606]
 gi|315663771|gb|EFV03493.1| integrase [Prevotella salivae DSM 15606]
          Length = 391

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 61/288 (21%), Positives = 114/288 (39%), Gaps = 30/288 (10%)

Query: 37  QSYEC-DT--RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
            +Y   D   R F  FL        T     +L+   I  F    RT  I  +S   ++ 
Sbjct: 110 ANYRKFDICKRHFTNFLEIKYAR--TDLNAIELTPIVIHDFDVYLRT--IVGQSFNTAIK 165

Query: 94  GIKSF---LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +K+F   + + +K  +      LN+   K        L +++  T++           +
Sbjct: 166 TLKTFKTVIIFGRKAGVFNHDPFLNIH-FKTKRVDRGFLTDEEIDTIMHKEFA----TQR 220

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRK 208
            ++ R+  +       GL   +  +LT  NI  MD +  +    K        LL  + K
Sbjct: 221 LVNVRDIFLFSCF--TGLAYVDVANLTADNIITMDGKQWIVTARKKTDTLSHILLLDIPK 278

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            I++ Y  C  +           G     L+      Y++++    G+  + T H  RH+
Sbjct: 279 MIIKKYAGCAKN-----------GRLIPILSNQRMNSYLKEIADVCGINKNLTFHMARHT 327

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           FAT +L+ G  + S+  +LGH  ++TTQ+Y  + +K   + M+ +  +
Sbjct: 328 FATMMLTKGVPVESVSKMLGHSSITTTQLYARITNKKIENDMLAVSKK 375


>gi|297163231|gb|ADI12943.1| phage integrase family protein [Streptomyces bingchenggensis BCW-1]
          Length = 354

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 66/323 (20%), Positives = 112/323 (34%), Gaps = 32/323 (9%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
              RG S +T+ +   D       LA         +   +++  +I   +     +    
Sbjct: 38  WRARGFSPVTIDN---DIGLLERALAALG------RPAWEVTPEDIDRVVGDLAVKGRAT 88

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK-------------SNSLPRALNEK 132
            + +  +   K F ++L+ RK          R +               S +L      +
Sbjct: 89  STRREYVQIFKGFHRFLQARKAAEIEAAFGARLVCPVDEFNASRHVGDDSPALVPPPTPE 148

Query: 133 QALTLVDNVLLHTSHETKW-IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TL 188
           +     D +    +   K+   AR+ A+   LY  GLR  EA  L   +    +     L
Sbjct: 149 RVTEFFDFMKQRIATARKYGPAARDYALFRTLYHAGLRSEEASLLEKPDAHFSRGPFGKL 208

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQ 244
            ++         P    V         L  F  ++  + P    LF    G  L+ G  +
Sbjct: 209 HVRFGKGAHTSGPRPRWVPMLDGLDLVLRWFLEDVRPKFPDSPVLFADESGGSLHRGTIR 268

Query: 245 RYIRQLRRYLGLP--LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             +R L    G P     + H LR + ATH    G DL +IQ +LGH+ +S+T  Y   +
Sbjct: 269 NRLRYLMELEGRPTAERFSPHALRRACATHNYERGVDLVAIQQMLGHWTVSSTMRYVRPS 328

Query: 303 SKNGGDWMMEIYDQTHPSITQKD 325
           +    D        T   +T+KD
Sbjct: 329 ATFIEDAYQRAVAGTLAELTEKD 351


>gi|298695304|gb|ADI98526.1| probable integrase [Staphylococcus aureus subsp. aureus ED133]
          Length = 390

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 48/293 (16%), Positives = 100/293 (34%), Gaps = 39/293 (13%)

Query: 52  FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111
            +  E+   + I+ ++  E + F++    Q      +   ++      KY    K+    
Sbjct: 92  HHAIERFNNKPIQTINKHEYQRFVNDISAQ-YSKNYVDSIIASTNMIFKYAYDMKLIRIL 150

Query: 112 NILNMRNLKKSNSL---------PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
               ++  KK  S+          + L + +    ++    H S +  +       +   
Sbjct: 151 PSEGIKRPKKKVSVEELEDTEIHKKFLEKDELFQFLEVAKNHHSPQNSFE------VFCT 204

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV------------------PLLP 204
           L   G+R  E L+L   +I  + +T+ I                            P+ P
Sbjct: 205 LAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNNNKKQYQVLTPKTESSIGKIPVDP 264

Query: 205 SVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LST 260
            V K +  Y           + +    +F  + G PL     Q +I+ + +   +     
Sbjct: 265 HVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYPLVIKKLQLWIKAILKKTDITNKQI 324

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMME 312
           + H+ RH+    L+  G  ++ IQ  L H  ++TT  IY  + +    D   +
Sbjct: 325 STHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKITNSYKKDASQK 377


>gi|302346947|ref|YP_003815245.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302150881|gb|ADK97142.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 407

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 61/306 (19%), Positives = 115/306 (37%), Gaps = 26/306 (8%)

Query: 14  LLKERQNWLQNLEIE--RGLSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTE 70
            L     ++ ++  +  + L+K T   Y+   + F  FL A Y  + I    +      +
Sbjct: 109 FLPVFDKYIDSITQQVGKTLTKGTFYKYKVVRQNFQDFLQAKYHRKDIGQTELTSAVVQD 168

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
              +++      + + + K  L  +K+ + Y + R +       N   L+        L 
Sbjct: 169 FELYLTS-VVGGVHNTTTK-KLRNLKTVVNYARNRGLIMHDPFAN-HKLRYELVDRGYLT 225

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQST 187
           E++ L ++           +    +N  I       GL   +  +LT   I+   D Q  
Sbjct: 226 EEEVLRIMKKHF----DIERLELVKNIFIFSCF--TGLAYIDVYNLTYDKIVTVEDRQWL 279

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           +  + K      V LL      I +YYD+               G     ++      Y+
Sbjct: 280 ITKRYKTSVDENVMLLDIPLAIIRKYYDINRKG-----------GKVFPMMSNQRINSYL 328

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +++    G+  + T H  RH+FAT  +S G  + S+  +LGH  +  TQIY  + +K   
Sbjct: 329 KEIADLCGIKKNLTFHMARHTFATMSISKGVPMESVSKMLGHTNIRITQIYARITNKKVE 388

Query: 308 DWMMEI 313
             M E+
Sbjct: 389 RDMEEL 394


>gi|219847773|ref|YP_002462206.1| integrase family protein [Chloroflexus aggregans DSM 9485]
 gi|219542032|gb|ACL23770.1| integrase family protein [Chloroflexus aggregans DSM 9485]
          Length = 380

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 62/336 (18%), Positives = 112/336 (33%), Gaps = 54/336 (16%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR------ 79
           E +R  ++ T+ SYE   R F  +      +++       L   ++ A+    R      
Sbjct: 45  EQQRHHARQTIASYEIALRLFTRWAERNGRQRLG-----DLQIGDLVAYARTLRKRSYDL 99

Query: 80  -------------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
                         +++ +R++   +  +  FL                    + S  LP
Sbjct: 100 SQRAAAVRAEGQPRERLSERTIHAYVRPLFGFLALADSHGAIPFRVAAA--RPEVSRVLP 157

Query: 127 R--------ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           R          + ++ +   D               RN+A+L+ L+  G RISEALSL  
Sbjct: 158 RLPDPVAPTPPDLRRLVRFYDKPHGEERERQTLTRLRNAALLHFLFSSGARISEALSLDV 217

Query: 179 QNIMDDQSTL---RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF-RGIR 234
            ++  D+  L    ++GKG +   + +      A+  Y     +          F     
Sbjct: 218 GDVTRDRRILARVIVRGKGRREGTLFIRKHAELALHRYLTARNWPSAREPLFVAFDPRTG 277

Query: 235 GKPLNPGVFQRYIRQLR-------------RYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
           G+ L+     R +                     L    T HT RH    HLL+ G  L 
Sbjct: 278 GERLSRISGWRIVTTAAHALADQMELEGKADEAELLRQVTPHTFRHFVGYHLLNEGVALA 337

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            +  IL H  +  T+   +  +      + E++DQ 
Sbjct: 338 EVSQILRHRSVEVTR---SFYASYADVQLQEVHDQF 370


>gi|66045987|ref|YP_235828.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
 gi|63256694|gb|AAY37790.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
 gi|330954063|gb|EGH54323.1| Phage integrase [Pseudomonas syringae Cit 7]
          Length = 321

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 62/295 (21%), Positives = 118/295 (40%), Gaps = 18/295 (6%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            ++ K  + +L  L      S+LT+     D    L          I       L    +
Sbjct: 20  PDVNKPLRLYLDRLAPS---SRLTMTYVLQDAADRLGMADV----DIHDIPWHTLQPGHV 72

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRAL 129
            A ++  R       +    ++ I+  +    +  + +   +L +R++K      L +  
Sbjct: 73  TALVATLRQDDYAPNTTSLYVNAIRGVMNEAWRHDLISHDQLLKIRSIKPVSGTRLVKGR 132

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           N +   TL+  ++   + + +    R++AI+ +LYG G+R SE+++L    I   + +LR
Sbjct: 133 NIR--RTLIRELMEACAADPRPQGRRDAAIIAILYGSGMRKSESVNLDLSQIDFAERSLR 190

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNP-GVFQR 245
           + GKG+K  I        KA+ ++  L    L        F   R  RG  +    + + 
Sbjct: 191 VLGKGNKQLIKYAPEWAFKALNDWLALRRSCLPPGQGDDPFLFNRIRRGSHITRDRITKH 250

Query: 246 YIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            I  + +  G  + ++   H  R SF T ++    DL   Q +  H  +STT  Y
Sbjct: 251 AIYFIAKQRGRQVGVNIMPHDFRRSFITRVIEE-FDLSIAQKLAHHTHISTTASY 304


>gi|110800856|ref|YP_695375.1| phage integrase family site specific recombinase [Clostridium
           perfringens ATCC 13124]
 gi|110675503|gb|ABG84490.1| site-specific recombinase, phage integrase family [Clostridium
           perfringens ATCC 13124]
          Length = 354

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 58/313 (18%), Positives = 124/313 (39%), Gaps = 58/313 (18%)

Query: 24  NLEIERGLS-KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
            LE E+      T+        +F         + +  + + +++  +I+  I     + 
Sbjct: 75  YLEHEKLYKEPKTIDGLVTVLHRF---------QDLNDKELCKITNLDIQKLIDNMTKEH 125

Query: 83  IGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
           + + +++  L  + S     K +  I  E     ++  K   +  +ALN+ +   L+   
Sbjct: 126 LNNNTIRYYLKILNSIFLCAKFKYNILDEVPSKYIKIGKPIPTKKKALNDDEINDLL--- 182

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG------- 194
                   K+ + +   ++YL    G+RI E L LT  +I  +   + +  +        
Sbjct: 183 -------LKFKNNKYYLVVYLAVNTGMRIGEILGLTWNDIDFNNCLISVNKQWKILKDNS 235

Query: 195 ---------DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
                    + IRI+P+  SV + +L+Y  +   D                  +      
Sbjct: 236 WGLGSVKSKNSIRIIPISNSVSEELLKYKTIINID-----------NRVFNFKSKNTILS 284

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +  L +  G   + + H LRH++AT L++NG D ++   ILGH    T ++Y++VN+  
Sbjct: 285 RVNILLKEYG--FNISLHELRHTYATKLIANGVDFKTAAKILGHSVEQTMKVYSHVNN-- 340

Query: 306 GGDWMMEIYDQTH 318
                 +++++ H
Sbjct: 341 ------DMFNKAH 347


>gi|295086881|emb|CBK68404.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 411

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 56/292 (19%), Positives = 113/292 (38%), Gaps = 29/292 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K TL  Y+   +    FL+  Y  + I ++ +     ++   F+  R  +     ++  
Sbjct: 130 AKGTLLKYKTVYKHLQEFLSIRYRVKDIALKELTPAFISDFEMFL--RTDKHCCTNTVWL 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +  +++ +      +  T         +KK  ++   L +++   L++  L +   E  
Sbjct: 188 YVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETVRSFLTKEEIRLLMEGRLKNAKQE-- 244

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRI-QGKGDKIRIVPLLPSV 206
                   +       GL  ++  +LT +N     D+   + I + K   +  + LL   
Sbjct: 245 ----LYRDLYLFCAFTGLSFADMRNLTEENIHTYFDEHEWININRQKTGVVSNIRLLDIA 300

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           ++ I +Y  LC                R  P+ +       IR + +  G+    T H  
Sbjct: 301 KRIIDKYRGLCG-------------NGRIFPVPHYNTCLAGIRSVAKRCGITKHITWHQS 347

Query: 266 RHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           RH+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +     M  +  +
Sbjct: 348 RHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMENLAAR 399


>gi|257878400|ref|ZP_05658053.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257882818|ref|ZP_05662471.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257889401|ref|ZP_05669054.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|257894414|ref|ZP_05674067.1| phage integrase [Enterococcus faecium 1,231,408]
 gi|257812628|gb|EEV41386.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257818476|gb|EEV45804.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257825761|gb|EEV52387.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|257830793|gb|EEV57400.1| phage integrase [Enterococcus faecium 1,231,408]
          Length = 351

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 53/318 (16%), Positives = 118/318 (37%), Gaps = 42/318 (13%)

Query: 18  RQNWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
            + +L     E     L   T ++Y    +        +    +  + +  LS   ++ F
Sbjct: 37  VKQYLDFWMEEYVKLNLKYNTYENYRFTIK-------NHINGYLGKKKLTDLSPALLQNF 89

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQ 133
           I+    +    +++  + S +K+ L        +  ++ +L ++  K     P    + +
Sbjct: 90  INAEFKKGYSKKTMTITHSVLKNALNMAVYPWGLIKQNPMLYVKIPKYEAR-PTTKKDLK 148

Query: 134 ALTL--VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            ++L   D++L  T     +        L + +  G+R+ E   LT  ++     T+ ++
Sbjct: 149 IISLEDFDHMLEITPEGHPFYIP-----LNIGFYTGMRVGEVCGLTWDDVDFSNGTITVE 203

Query: 192 GKG---------------DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
            +                   R + +  ++   + ++      +     +L +       
Sbjct: 204 KQMVKNDGAWVYGTPKTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCT 263

Query: 237 P-----LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
                 + P V +   R++   L L  +   H+LRH+ AT LL NG  ++ I   LGH R
Sbjct: 264 KEDGELVTPSVVKWNTRRISNALSLSFN--FHSLRHTHATLLLENGAKMKEISERLGHSR 321

Query: 292 LSTTQ-IYTNVNSKNGGD 308
           +S T   Y++V  K   +
Sbjct: 322 ISITMDTYSHVTDKMRNE 339


>gi|167738592|ref|ZP_02411366.1| phage integrase family protein [Burkholderia pseudomallei 14]
 gi|167894302|ref|ZP_02481704.1| phage integrase family protein [Burkholderia pseudomallei 7894]
          Length = 511

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 62/339 (18%), Positives = 122/339 (35%), Gaps = 35/339 (10%)

Query: 5   NLPEIVSFE--LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
           +L E V+ +    KE +  +    +ER  +  +L +   D   +  FL   T  +  +  
Sbjct: 174 SLHESVATQRAYRKEAERLILWAIVERNCALSSLTT--DDAIAYRSFLRRPTPRERWVGP 231

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR----N 118
            R     E R F        +  RS   +L+ + +  ++L +++    +    ++     
Sbjct: 232 SRPRHSVEWRPF-----NGALSPRSAAYALNVLSAMFRWLVEQRYVLANPFAGIKVKSHA 286

Query: 119 LKKSNSLPRALNEKQALTL--VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
            +    + R  +E + L +  + + L  +   +     R   +L   Y  GLR SE +  
Sbjct: 287 PRAGLDVSRGFSEGEWLLIRTLADGLEWSYGWSAPAAQRLRFLLDFGYATGLRASELVGA 346

Query: 177 TPQNIMDDQS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLF 230
              +I  D+     L + GKG K+  V L    R A+ +Y       +     N   PL 
Sbjct: 347 KLGDIRRDEHGDHWLHVLGKGGKLGKVALPSLARTALDQYLVQRGLPVTPERWNPATPLV 406

Query: 231 RGIRGK--PLNPGVFQRYIRQLRRYLGLP------------LSTTAHTLRHSFATHLLSN 276
             +      +      R + +                       + H +RH+ A+H L+ 
Sbjct: 407 VSLEEDGARIESTRLWRVLCRFFVLAADTIQDERPATAEKLRCASPHWMRHTHASHALAR 466

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           G +L  ++  L H  +STT  Y + +         + + 
Sbjct: 467 GAELIMVRDNLRHASISTTSTYLHSDEVQRARQFDQAFR 505


>gi|304396875|ref|ZP_07378755.1| integrase family protein [Pantoea sp. aB]
 gi|304355671|gb|EFM20038.1| integrase family protein [Pantoea sp. aB]
          Length = 338

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 92/235 (39%), Gaps = 31/235 (13%)

Query: 79  RTQKIGDRSLKRSLSGIKSFL-KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R + +  R++   L+  ++   +  +  + T  + + N+R  K S S    L  ++  TL
Sbjct: 123 RVKTVTPRTVNLELAYFRAMFNELRRLDEWTAANPLENVREFKISESEMAYLTIEEIRTL 182

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +       S +          I+ +    G R SEA  L   N +     + ++ KG K 
Sbjct: 183 LAECENSRSKDLT-------TIVKICLATGARWSEAEGLK-GNQIRAGQIIYVKTKGKKN 234

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL- 256
           R VP+   +   +           +      LF+                R+  +  G+ 
Sbjct: 235 RAVPITEKLHSDL----------PSSRKAELLFKPCYS----------AFRKAMQRAGIE 274

Query: 257 -PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            P     H LRH+FA+H + NGG++  +Q ILGH  +  T  Y++    +  + M
Sbjct: 275 TPAGQLTHVLRHTFASHFMMNGGNILVLQRILGHTDIKVTMRYSHFAPDHLSEAM 329


>gi|253755988|ref|YP_003029128.1| phage integrase [Streptococcus suis BM407]
 gi|251818452|emb|CAZ56281.1| putative phage integrase [Streptococcus suis BM407]
          Length = 380

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 60/345 (17%), Positives = 118/345 (34%), Gaps = 64/345 (18%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQS--YEC-----DTRQFLIFLAFYTEEKIT 59
           P+ ++FE  +  + WL++        K T+++  Y       D     +F A Y  +KI+
Sbjct: 63  PDRITFE--EVYKIWLEHY-------KNTVKASTYARQKAQADLHIVPVFGACYV-DKIS 112

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           +   ++ +    + +           +     +   K  L +        ++ +  +   
Sbjct: 113 LPMCQKQAQEWFKGY-----------KKYANFIGMTKMVLDFAVNLGYIHDNPMKKIIKP 161

Query: 120 KKSNSLPR-------ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           +KS+ +           + +     +D V      E        + I  LL   G+R SE
Sbjct: 162 RKSSEVDEEEKKKENFYSREDLQKFLDCVAKEDKEEI-------ACIFRLLAFTGMRKSE 214

Query: 173 ALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAILEYYDL 216
            L+L  +++    S L +                       R + L P     + ++   
Sbjct: 215 VLALRWKDLDLFTSRLSVSQIVAYGENNSIVYQTPKTKKSKRTITLDPITVSILKKWEKT 274

Query: 217 CPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
             F        P   +F    G   +       +R + +   LP   T H  RH+  + L
Sbjct: 275 RQFLNFPQRVKPTDLVFPAETGNAHSFDYINYNLRCILKKYDLPY-ITPHGFRHTHCSLL 333

Query: 274 LSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQT 317
              G  ++ +Q  LGH  + TT  IY +V  +N  +   E + Q 
Sbjct: 334 FEAGASIKEVQERLGHEDIKTTMNIYAHVT-ENTKEKTAEKFAQF 377


>gi|153821974|ref|ZP_01974641.1| integrase [Vibrio cholerae B33]
 gi|229508872|ref|ZP_04398363.1| integrase [Vibrio cholerae B33]
 gi|126520513|gb|EAZ77736.1| integrase [Vibrio cholerae B33]
 gi|229354147|gb|EEO19079.1| integrase [Vibrio cholerae B33]
          Length = 385

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 50/283 (17%), Positives = 102/283 (36%), Gaps = 26/283 (9%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK----IGDRSLKRSL 92
            +Y            ++   ++T + I +      + ++ K  T K    +   ++    
Sbjct: 111 SNYSIWVSAGHHLRRYHGRAELTFEDIDRAFLEGFKTYLLKSATTKSDQLLSRNTVSSYF 170

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           + I++ L    +  I  ++ +  ++++K   +    L  ++   +            K  
Sbjct: 171 NKIRAALNQAYQEGIIRDNPVRTVKSVKPETNQRVYLTLEEIKAM-----------AKAE 219

Query: 153 DARNSAILYLLYGC--GLRISEALSLTPQN-IMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              +      L+ C  GLR S+   L        +Q   RI  K  KI+      +  + 
Sbjct: 220 CRYDVLKRAFLFSCTTGLRWSDIQKLVWSEVEEFEQGHFRIIFKQKKIQNRG---TALQY 276

Query: 210 I-LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           + L    +       +    +F+ +R            +       G+    T H  RHS
Sbjct: 277 LDLPDSAVRLMGERKDNDERVFKALRYSSYT----NVALLHWAMLAGITKHVTFHAGRHS 332

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           FA + L+ G D+ S+  +LGH  L TT+IY ++  +   D M 
Sbjct: 333 FAVNQLARGLDIYSLSRLLGHSELKTTEIYADILDQRRRDAMR 375


>gi|313886232|ref|ZP_07819961.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924303|gb|EFR35083.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 423

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 114/289 (39%), Gaps = 24/289 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKR 90
           S  TLQ Y+   R+F  FL      +     + +L+Y  I  F    RT       +  +
Sbjct: 139 SAPTLQKYKVCKRRFSEFLKDKLRRR--DLKLTELTYMIIHDFDLYLRTVVGQNPNTATK 196

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           ++   K+ +   +K  +      +N R   +  +    L +++ L +V+  L     E  
Sbjct: 197 TMKTFKTVVILGQKLGVLHHDPFVNFRFHLEPVNR-GFLTDEEVLQIVNKELNIPRLEL- 254

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMD---DQSTLRIQGKGDKIRIVPLLPSVR 207
               R+  I       GL   +  +LTP NI+     +  +  + K      V LL   +
Sbjct: 255 ---VRDIFIFSCF--TGLAYIDVANLTPDNIVMLGGKEWIMTKRQKTSVETNVLLLDIPK 309

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + I +Y      D           G     L+      Y++++    G+  + T H  RH
Sbjct: 310 RIISKYSHQTYRD-----------GKLFPILSNQKTNSYLKEIADICGIKKNLTFHLARH 358

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +FAT  LS G  + S+  +LGH  + TTQIY  + +K     M +  D+
Sbjct: 359 TFATMSLSKGVPIESVSKMLGHTNIRTTQIYARITNKKIEHDMEQFADK 407


>gi|302534721|ref|ZP_07287063.1| phage integrase [Streptomyces sp. C]
 gi|302443616|gb|EFL15432.1| phage integrase [Streptomyces sp. C]
          Length = 422

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 66/336 (19%), Positives = 111/336 (33%), Gaps = 65/336 (19%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL ++ + R L + T   Y    R  LI         +  + + +L+  ++R F+ + RT
Sbjct: 83  WLGSVAVHR-LRENTHTRYAACVRLHLI-------PGLGTKKVARLTAKDVRTFLDRLRT 134

Query: 81  ------------------------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
                                   +++   ++    S +KS L++  +      +   N+
Sbjct: 135 TCQCCTQGLDTERKRCCAIGECCQKQLSALTVTYVHSVLKSALEHAVREDELPRNVARNV 194

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           +         R L   +A   +D       H          A+  L    GLR  E L L
Sbjct: 195 KTTTHQPRRFRPLTAAEARQFLDAARADRLH----------ALYELALRTGLRKGELLGL 244

Query: 177 TPQNIMDDQSTLRIQ----------------GKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
             +++     T  I                       R + L      ++ E+      +
Sbjct: 245 HWEDLDLTTGTASIHRSLQRTRTGGLTHLPTKTRASERRIALPTECLHSLKEHKGRQDKE 304

Query: 221 LNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
                        +F    G PL+P    R  R      GL      H LRHS AT LL 
Sbjct: 305 RETAESAWQDSGLVFTTPTGGPLDPANLTRRFRSFLDRAGL-RRIRFHDLRHSTATLLLE 363

Query: 276 NGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWM 310
            G DL  I+ +LGH  +  T  +Y +V  +   D +
Sbjct: 364 QGVDLVVIKELLGHAHIGVTAGVYAHVRLRLQRDAI 399


>gi|237711030|ref|ZP_04541511.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|229454874|gb|EEO60595.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA]
          Length = 352

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 63/290 (21%), Positives = 110/290 (37%), Gaps = 23/290 (7%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD--RSLKR 90
           + T+  YE   R    FL    E K +    R +    +  F    +T+K      ++K 
Sbjct: 79  EATVLRYERTVRYLEEFLK--KEYKSSDIPFRNIDRQFVEKFEYFIKTEKNCAQNATVK- 135

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L  +K  +      K  TE+    ++  K++ +    L E++   +++        E  
Sbjct: 136 YLKILKKIVTLALTNKWMTENPFTGIK-FKQTQTNRDFLTEEELHAIMEKKFDIPRLEAV 194

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRIVPLLP--SVR 207
                   I       GL  ++   L P++I  D      I+   +K   V  +P   + 
Sbjct: 195 ------RDIFVFCCLSGLAFTDVQHLKPEHITKDINGEWWIRKAREKTNNVCHIPLLDIP 248

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             I+E Y   P  L  N+ LP+    R           Y++++    G+    T H  RH
Sbjct: 249 AMIIEKYRKNPVCLQKNMVLPVPSNQRM--------NSYLKEIADVCGITKKLTTHIARH 300

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           SFA   L+N   + +I  +LGH  + TT+IY  V        M  + ++ 
Sbjct: 301 SFACFALANKVSMETIAKMLGHSDIRTTKIYAKVLDTTVSKEMETMKNKF 350


>gi|297589909|ref|ZP_06948549.1| integrase [Staphylococcus aureus subsp. aureus MN8]
 gi|297577037|gb|EFH95751.1| integrase [Staphylococcus aureus subsp. aureus MN8]
 gi|315193060|gb|EFU23461.1| hypothetical protein CGSSa00_09058 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 402

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 99/292 (33%), Gaps = 39/292 (13%)

Query: 53  YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
           +  E+   + I+ ++  E + F++    Q      +   ++      KY    K+     
Sbjct: 105 HAIERFNNKPIQTINKHEYQRFVNDISAQ-YSKNYVDSIIASTNMIFKYAYDMKLIRIMP 163

Query: 113 ILNMRNLKKSNSL---------PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
              ++  KK  S+          + L + +    ++    H S +  +       +   L
Sbjct: 164 SEGIKRPKKKISVEELEDTEIHKKFLEKDELFQFLEVAKNHHSPQNSFE------VFCTL 217

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP------------------LLPS 205
              G+R  E L+L   +I  + +T+ I                             + P 
Sbjct: 218 AYTGMRAGELLALKWSDIDFENNTINITKTYYNPNNNKKQFQILTPKTESSIGKISVDPH 277

Query: 206 VRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTT 261
           V K +  Y           + +    +F  + G PL     Q +I+ + +   +     +
Sbjct: 278 VIKLLKNYKTDVQDTWKNELYVDNNFVFTDVNGYPLVIKKLQLWIKAILKKTDITNKQIS 337

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMME 312
            H+ RH+    L+  G  ++ IQ  L H  ++TT  IY  + +    D   +
Sbjct: 338 THSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKITNSYKKDASQK 389


>gi|283771192|ref|ZP_06344083.1| integrase [Staphylococcus aureus subsp. aureus H19]
 gi|283459786|gb|EFC06877.1| integrase [Staphylococcus aureus subsp. aureus H19]
          Length = 390

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 99/292 (33%), Gaps = 39/292 (13%)

Query: 53  YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
           +  E+   + I+ ++  E + F++    Q      +   ++      KY    K+     
Sbjct: 93  HAIERFNNKPIQTINKHEYQRFVNDISAQ-YSKNYVDSIIASTNMIFKYAYDMKLIRIMP 151

Query: 113 ILNMRNLKKSNSL---------PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
              ++  KK  S+          + L + +    ++    H S +  +       +   L
Sbjct: 152 SEGIKRPKKKISVEELEDTEIHKKFLEKDELFQFLEVAKNHHSPQNSFE------VFCTL 205

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP------------------LLPS 205
              G+R  E L+L   +I  + +T+ I                             + P 
Sbjct: 206 AYTGMRAGELLALKWSDIDFENNTINITKTYYNPNNNKKQFQILTPKTESSIGKISVDPH 265

Query: 206 VRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTT 261
           V K +  Y           + +    +F  + G PL     Q +I+ + +   +     +
Sbjct: 266 VIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYPLVIKKLQLWIKAILKKTDITNKQIS 325

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMME 312
            H+ RH+    L+  G  ++ IQ  L H  ++TT  IY  + +    D   +
Sbjct: 326 THSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKITNSYKKDASQK 377


>gi|238903406|ref|YP_002929202.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli BW2952]
 gi|238863731|gb|ACR65729.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli BW2952]
          Length = 201

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 73/180 (40%), Gaps = 9/180 (5%)

Query: 123 NSLPR--ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
            SLP+   L  K+   ++  V    +       AR+  ++ L Y  G+RISE L L  Q+
Sbjct: 2   ESLPKRRYLTGKEVQAMMQAVCYGAT------GARDYCLILLAYRHGMRISELLDLHYQD 55

Query: 181 IMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           +  ++  + I+  K     + PL    R+A+  +          +    +F   RG  L+
Sbjct: 56  LDLNEGRINIRRLKNGFSTVHPLRFDEREAVERWTQERANWKGADRTDAIFISRRGSRLS 115

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                R IR      G    T  H LRH+    L   G D R IQ  LGH  +  T  YT
Sbjct: 116 RQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYT 175


>gi|209917522|ref|YP_002291606.1| putative phage integrase [Escherichia coli SE11]
 gi|227884672|ref|ZP_04002477.1| phage integrase family site-specific recombinase [Escherichia coli
           83972]
 gi|300817163|ref|ZP_07097381.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 107-1]
 gi|300977263|ref|ZP_07173794.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 45-1]
 gi|301045933|ref|ZP_07193118.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 185-1]
 gi|306813204|ref|ZP_07447397.1| putative phage integrase [Escherichia coli NC101]
 gi|331645493|ref|ZP_08346597.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli M605]
 gi|331656378|ref|ZP_08357340.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli TA206]
 gi|331675968|ref|ZP_08376680.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli H591]
 gi|82570975|gb|ABB83955.1| HbiF [Escherichia coli]
 gi|209910781|dbj|BAG75855.1| putative phage integrase [Escherichia coli SE11]
 gi|222032128|emb|CAP74867.1| Type 1 fimbriae regulatory protein FimX [Escherichia coli LF82]
 gi|227838273|gb|EEJ48739.1| phage integrase family site-specific recombinase [Escherichia coli
           83972]
 gi|281177498|dbj|BAI53828.1| putative phage integrase [Escherichia coli SE15]
 gi|294493486|gb|ADE92242.1| site-specific recombinase, phage integrase family [Escherichia coli
           IHE3034]
 gi|300302050|gb|EFJ58435.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 185-1]
 gi|300409904|gb|EFJ93442.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 45-1]
 gi|300530139|gb|EFK51201.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 107-1]
 gi|305853967|gb|EFM54406.1| putative phage integrase [Escherichia coli NC101]
 gi|307552233|gb|ADN45008.1| putative phage integrase [Escherichia coli ABU 83972]
 gi|312944907|gb|ADR25734.1| putative phage integrase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315287721|gb|EFU47124.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 110-3]
 gi|315295185|gb|EFU54520.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 153-1]
 gi|315300325|gb|EFU59561.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 16-3]
 gi|323953063|gb|EGB48931.1| phage integrase [Escherichia coli H252]
 gi|323958739|gb|EGB54440.1| phage integrase [Escherichia coli H263]
 gi|324020450|gb|EGB89669.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 117-3]
 gi|331045655|gb|EGI17781.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli M605]
 gi|331054626|gb|EGI26635.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli TA206]
 gi|331076026|gb|EGI47308.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli H591]
          Length = 187

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 45/174 (25%), Positives = 69/174 (39%), Gaps = 7/174 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L + +   L+D      + ++     RN  ++ + +  G R SE L L   +I     
Sbjct: 4   KYLTQDEVYRLMD------AAQSMSFPERNRCLIMMAFIHGFRASELLDLRLSDIDASGK 57

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            L I+  K       PLLP     I  +        N      LF   + +P++   F  
Sbjct: 58  QLNIRRIKNGFSTTHPLLPDEYNLIKLWLKQRKLIENGVEGDWLFLSRKRRPISRQHFFS 117

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            IR+  +  GL +    H LRH+    L  NG D R +Q  LGH  +  T  YT
Sbjct: 118 IIREAGKRAGLAVKAHPHMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYT 171


>gi|13488152|ref|NP_085859.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14028108|dbj|BAB54700.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 412

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 63/312 (20%), Positives = 114/312 (36%), Gaps = 26/312 (8%)

Query: 8   EIVSFELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           +     L  E   +L Q+L    GL++ T+        +F  +L    +E  +IQ     
Sbjct: 115 QPPPSPLFAEYDAYLVQHL----GLAERTIHKQLSHLSKFYNYLVRAGKEWYSIQ----- 165

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNS 124
             T++ AF+    TQ      +    S ++ F ++L             +     +    
Sbjct: 166 -LTDVDAFLVGCSTQ-YSRSYVSNIASTVRCFYRFLHWSGKNPIDISEAIIAPIQRPFER 223

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
             RAL  +    L     L+    +  +  R+ AIL +L   GL  +E   L  Q I  +
Sbjct: 224 PRRALPWEDVQRL-----LNAVDRSTPVGLRDYAILLMLSTYGLGAAEVNRLQFQAIDWN 278

Query: 185 QSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV- 242
            +TL + + K      +PLLP + +A+  Y             + +   +  +P      
Sbjct: 279 ANTLAVYRPKTGVSFTLPLLPPISEALAHYLRYGRPVDTPTRHIFVQMQVPFEPYVRSSA 338

Query: 243 FQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               + +  R  G+      +H LRHS A   +  G   + +  +LGH    +   Y  +
Sbjct: 339 IGHIVAKHARKAGINAPSLGSHVLRHSHAGRQIDLGTRPQVLSELLGHSDPESVSAYVRI 398

Query: 302 NSKNGGDWMMEI 313
            +    D + EI
Sbjct: 399 AT----DSLREI 406


>gi|218236017|ref|YP_002367298.1| DNA integration/recombination/invertion protein [Bacillus cereus
           B4264]
 gi|218163974|gb|ACK63966.1| site-specific recombinase, phage integrase family [Bacillus cereus
           B4264]
          Length = 369

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 57/315 (18%), Positives = 115/315 (36%), Gaps = 39/315 (12%)

Query: 18  RQNWLQNLEIERGLS--KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            +++L +    + +S  K T   Y         F+  +    I +  + +L+   I+   
Sbjct: 65  LKDYLNHWLEIKSMSIEKSTFAGYR-------AFINQHVIPSIGMVALHKLNVMHIQKCY 117

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                + I + S+      +KS L    K+ I + +        KK  +  +   E++  
Sbjct: 118 KNAIDKGIANNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKTPIQTWTEEEVK 177

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
             + +     S E+++      AI       G+R+ E L L  Q+I  ++ T+ I     
Sbjct: 178 KFLAH-----SQESRYHIGYLLAI-----TTGMRLGEVLGLRWQDIDFEKHTVTINQTSG 227

Query: 196 KI-------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-----FRGIRGKP 237
                          R +P+      A+ ++  L   +        L          G+ 
Sbjct: 228 HDNKIKKTAKTNSSKRTIPVPNETIAALKKHKVLINKEKLRFGSAYLDQDLINCNEFGRI 287

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
           +    F++   ++   +G+      H LRH+ AT LL  G + + I   LGH  +S T  
Sbjct: 288 IKRAHFRKSFIRMTHKVGI-KEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLS 346

Query: 297 IYTNVNSKNGGDWMM 311
           +Y++V      + + 
Sbjct: 347 VYSHVLPNMQEEAVK 361


>gi|167462689|ref|ZP_02327778.1| DNA integration/recombination/invertion protein [Paenibacillus
           larvae subsp. larvae BRL-230010]
 gi|322384964|ref|ZP_08058620.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150261|gb|EFX43768.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 410

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 60/324 (18%), Positives = 113/324 (34%), Gaps = 50/324 (15%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR---------RT 80
            LS LT ++Y       +     +    +  + +  +    +  FI            + 
Sbjct: 93  NLSPLTFRNY-------VSHFDTHISPSLGHKHLGDIKTLHVVTFIDDLGKPGARKDGKE 145

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            ++ + +++     +K+ L+  K+  +   + I+ ++  K         +E +A  ++  
Sbjct: 146 GRLSNGTIQYIYRVLKNILERAKEWGLIKVNPIIGVKKPKVGRPEIHFYDEVEAQEVI-- 203

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK------- 193
                S   K        IL  + G G R  E L+L   ++  D  TL I          
Sbjct: 204 -----SALDKEPRTWRLFILGSMIG-GFRRGELLALEWTDVDFDNMTLSINKSISLTVDG 257

Query: 194 ---------GDKIRIVPLLPSVRKAILEYYDLCPFD-------LNLNIQLPLFRGIRGKP 237
                       IRIV +       +  +      +            +  +F    GKP
Sbjct: 258 HAVEKEPKSKSSIRIVDMPEWYMDELKIHKHEWKKEKLFVGDKWRGGDKQYVFHAGFGKP 317

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
           L      ++  +  +   L      H LRHS AT L+  G  +++IQ  LGH +  TT  
Sbjct: 318 LYHTYPTQWWGEFIKRHNL-KRVRFHDLRHSSATLLIEAGASMKAIQERLGHSKHQTTAD 376

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPS 320
           IY ++  K   +   E +D+  P 
Sbjct: 377 IYAHITKKVSRET-AEKFDKFAPK 399


>gi|320527410|ref|ZP_08028592.1| site-specific recombinase, phage integrase family [Solobacterium
           moorei F0204]
 gi|320132267|gb|EFW24815.1| site-specific recombinase, phage integrase family [Solobacterium
           moorei F0204]
          Length = 307

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 113/270 (41%), Gaps = 28/270 (10%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-K 120
            + +++  +++ F+  +    + +++++  +  +K  LK+  K        I +++   K
Sbjct: 44  DLYEVNEEKVQQFVFDKLDAGLSEKTIRDIIIVLKMILKFGIKNGYLEYVQI-DVKFPSK 102

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +       L++      +++  L  +   K +       +++    G+RI E   L   +
Sbjct: 103 QEKKDLDVLSKADQKKFMEH--LRNNFTFKNLG------IFICLSTGMRIGEICGLRWCD 154

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR--------- 231
           +   +  ++++    +I I+       + +L+         ++ +   L +         
Sbjct: 155 VDTAEGVIKVRHTLQRIYIIEGETRHTELLLDTPKTANSVRDIPMSSELLKMLKSLNKVV 214

Query: 232 -------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
                      KP+ P  ++ Y ++L + L +P     H+LRHSFAT  + +  D +++ 
Sbjct: 215 NENYYVISNDIKPIEPRTYRNYYKKLCKQLDIP-ELKFHSLRHSFATRCIESKADYKTVS 273

Query: 285 SILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
            +LGH  +STT  +Y + N +     + ++
Sbjct: 274 VLLGHSNISTTLNLYVHPNKEQKKKTIDKM 303


>gi|282904692|ref|ZP_06312567.1| integrase [Staphylococcus aureus subsp. aureus C160]
 gi|282906371|ref|ZP_06314223.1| integrase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|283958805|ref|ZP_06376251.1| integrase [Staphylococcus aureus subsp. aureus A017934/97]
 gi|295428615|ref|ZP_06821242.1| hypothetical protein SIAG_02387 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|116282493|gb|ABJ97306.1| integrase [Staphylococcus aureus]
 gi|282330568|gb|EFB60085.1| integrase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282594941|gb|EFB99917.1| integrase [Staphylococcus aureus subsp. aureus C160]
 gi|283789845|gb|EFC28667.1| integrase [Staphylococcus aureus subsp. aureus A017934/97]
 gi|295127597|gb|EFG57236.1| hypothetical protein SIAG_02387 [Staphylococcus aureus subsp.
           aureus EMRSA16]
          Length = 390

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 99/292 (33%), Gaps = 39/292 (13%)

Query: 53  YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
           +  E+   + I+ ++  E + F++    Q      +   ++      KY    K+     
Sbjct: 93  HAIERFNNKPIQTINKHEYQRFVNDISAQ-YSKNYVDSIIASTNMIFKYAYDMKLIRIMP 151

Query: 113 ILNMRNLKKSNSL---------PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
              ++  KK  S+          + L + +    ++    H S +  +       +   L
Sbjct: 152 SEGIKRPKKKISVEELEDTEIHKKFLEKDELFQFLEVAKNHHSPQNSFE------VFCTL 205

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP------------------LLPS 205
              G+R  E L+L   +I  + +T+ I                             + P 
Sbjct: 206 AYTGMRAGELLALKWSDIDFENNTINITKTYYNPNNNKKQFQILTPKTESSIGKISVDPH 265

Query: 206 VRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTT 261
           V K +  Y           + +    +F  + G PL     Q +I+ + +   +     +
Sbjct: 266 VIKLLKNYKTDVQDTWKNELYVDNNFVFTDVNGYPLVIKKLQLWIKAILKKTDITNKQIS 325

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMME 312
            H+ RH+    L+  G  ++ IQ  L H  ++TT  IY  + +    D   +
Sbjct: 326 THSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKITNSYKKDASQK 377


>gi|228918725|ref|ZP_04082145.1| Phage integrase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228840942|gb|EEM86164.1| Phage integrase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 347

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 63/293 (21%), Positives = 119/293 (40%), Gaps = 29/293 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           +  S+ T + Y  D   FL ++        +I TI++LS+ E+  +  +  ++K    +L
Sbjct: 59  KKRSERTKKLYLHDLSHFLRYIKE------SIGTIKELSHNEMEIYFYQL-SKKYAATTL 111

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQALTLVDNVLLHTS 146
           +R  + ++ FLKY+      +++    ++ +  KK   + R L  ++   ++D       
Sbjct: 112 RRKKTVVQQFLKYVYDNNGLSDNFSTRLKKVSVKKEELVNRDLFPEEVTQILD------- 164

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----DQSTLRIQGKGDKIRIVPL 202
            E K  +       +LL   GLRI E  +    +++     +   LR+ GKG+KIR V +
Sbjct: 165 -ELKKSNYFVYTTFFLLTTTGLRIEEIATAKWADLVFHSSLNAYLLRVVGKGNKIREVRI 223

Query: 203 LPSVRKAILEYYDLCPF--DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL---- 256
                 A+     L     +L+ +          G           + +      L    
Sbjct: 224 FEDTLDALCHVRRLRKQTTELDASSTSAFLPRADGSNYRADYLSSLVAKKIEETNLAFLR 283

Query: 257 --PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                 T HT RH  A +L+  G +L+ I+  LGH  + TT+ Y    ++   
Sbjct: 284 YRQDRITPHTCRHFMANYLMEKGVELKKIRDYLGHESIMTTERYLRERTRRQN 336


>gi|323171324|gb|EFZ56971.1| phage integrase family protein [Escherichia coli LT-68]
          Length = 192

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 70/174 (40%), Gaps = 7/174 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R L  K+   ++  V    +       AR+  ++ L Y  G+RISE L L  Q++  ++ 
Sbjct: 5   RYLTGKEVQAMMQAVCYGAT------GARDYCLILLAYRHGMRISELLDLHYQDLDLNEG 58

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            + I+  K     + PL    R+A+  +          +    +F   RG  L+     R
Sbjct: 59  RINIRRLKNGFSTVHPLRFDEREAVERWTQERANWKGADRTDAIFISRRGSRLSRQQAYR 118

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            IR      G    T  H LRH+    L   G D R IQ  LGH  +  T  YT
Sbjct: 119 IIRDAGIEAGTVTQTHPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYT 172


>gi|238855032|ref|ZP_04645361.1| integrase [Lactobacillus jensenii 269-3]
 gi|282934072|ref|ZP_06339352.1| phage integrase [Lactobacillus jensenii 208-1]
 gi|238832403|gb|EEQ24711.1| integrase [Lactobacillus jensenii 269-3]
 gi|281301874|gb|EFA94138.1| phage integrase [Lactobacillus jensenii 208-1]
          Length = 367

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 52/309 (16%), Positives = 117/309 (37%), Gaps = 21/309 (6%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           +  L    +++++ L ++  +   TL +Y    ++         E+      ++ ++ + 
Sbjct: 67  NPALFDYAEDYIE-LNVKNRVRPATLIAYRNSIKR--------IEDNFPNIPLKSITRSM 117

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS--NSLPRA 128
            +AF+++  + K    ++ ++       +K      I        ++  +K+        
Sbjct: 118 FQAFLNQ-ISIKYSKSTVNQTAVVFSQIMKLALADGIIVRDVTSFVQIPEKAQDKRKIDY 176

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+      LV ++  + S             +      G R+SE  +LT  ++      +
Sbjct: 177 LSLSDVKALVQHIKSNLSTSKVGPY-----FILTAIQTGARLSEIAALTWNDLTPTSIKI 231

Query: 189 RIQGKGDKIRIVPLLPSVRK--AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
             Q   D +   P   S  +  +I +       DL +N +  +F    G   +P      
Sbjct: 232 TKQRNRDGVVSKPKTESSVRTVSITKELYNILQDLKVNKKDLIFEQPNGIVPDPSSLNFT 291

Query: 247 IRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSK 304
           +R+L +  G+       H+LRH+    LL+   D+ +I   LGH  +S TT++Y  +  +
Sbjct: 292 LRRLLKECGIKRHGFHFHSLRHTHVALLLNADVDILTISQRLGHKNVSTTTEVYAYLLDE 351

Query: 305 NGGDWMMEI 313
                  +I
Sbjct: 352 KKKSEERKI 360


>gi|322832185|ref|YP_004212212.1| integrase family protein [Rahnella sp. Y9602]
 gi|321167386|gb|ADW73085.1| integrase family protein [Rahnella sp. Y9602]
          Length = 328

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 98/255 (38%), Gaps = 32/255 (12%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILN 115
           +I +    Q++   I  +  K   + +   S+ R  +     F K +   +  +E     
Sbjct: 95  EIGVTRADQITKKAITDYRVKMMNEGLKPASVNRHQAIFSGMFTKLIDANEYHSEHPFRG 154

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           ++ LK++      L+ ++   L+D            ++  N   + L    G R SE   
Sbjct: 155 VKKLKEAEPEMAFLSTEEITQLLDM-----------LEGDNRNAVLLCLATGGRWSEVAD 203

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           L  ++I++   T  ++ K  + R +PL   + K +                  LF     
Sbjct: 204 LKAEHIINCMLTF-MKTKNGRRRTIPLSEGLVKMV-----------KKRSTGKLFTP--- 248

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
              N    +  +R       LP     H LRH+FATH + NGG++ ++Q ILGH  +  T
Sbjct: 249 ---NYDTVRNTLR--AMKPDLPAGQAVHVLRHTFATHFMMNGGNIITLQRILGHSTVQQT 303

Query: 296 QIYTNVNSKNGGDWM 310
            +Y +       D +
Sbjct: 304 MVYAHFAPDFLQDAV 318


>gi|209919029|ref|YP_002293113.1| phage integrase [Escherichia coli SE11]
 gi|209912288|dbj|BAG77362.1| phage integrase [Escherichia coli SE11]
          Length = 325

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 103/257 (40%), Gaps = 29/257 (11%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNIL 114
           E +    + +L+ T +      R  Q I   ++ R +  + +    L        ++ + 
Sbjct: 90  EAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAMFTALISSGHFLNDNPVQ 149

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            ++ +K +      L++ + + L+D  L     E           + +L   G R  E  
Sbjct: 150 GLKGMKVNEREMGYLSKSECVQLLDA-LAENPDE--------RLAVEILLSTGARWGEVA 200

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +L  + ++  + T   + K  K R VP+  S+ + I                  +F    
Sbjct: 201 ALEQRRVLHCRITFS-KTKNSKNRTVPISESLFEKI-----------KKRGGKLVFPT-- 246

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              L+  + +  I+ +     +P     H LRH+FA+H + NGG++ ++Q ILGH ++ T
Sbjct: 247 ---LDYSLVRDVIKTVA--PDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQT 301

Query: 295 TQIYTNVNSKNGGDWMM 311
           T IY ++      D + 
Sbjct: 302 TMIYAHLAPDYLQDAVR 318


>gi|75812471|ref|YP_320090.1| Phage integrase [Anabaena variabilis ATCC 29413]
 gi|75705227|gb|ABA24901.1| Phage integrase [Anabaena variabilis ATCC 29413]
          Length = 343

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 58/296 (19%), Positives = 111/296 (37%), Gaps = 33/296 (11%)

Query: 20  NWLQNLEIER--GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            W++ LE  R   L+  + + YE + ++FL +   +  E         LS   +  +   
Sbjct: 44  RWIKVLEFLRSTNLAPNSRKLYERELKRFLAWTQLHYHE---------LSPRHLGLYKEY 94

Query: 78  RRTQ-------KIGDRSLKRSLSGIKSFLKYLKKR--KITTESNILNMRNLKKSNSLPRA 128
            R +        +   S+   ++ +KSF  ++     +I   +  L ++  K      ++
Sbjct: 95  LRDEVKTDAGKPLSKASINAGVAALKSFFNWMCYTYPEIIVTNPTLGIKLEKVPLPPAQS 154

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L ++Q   +   + L    +      R++A++++L   GLR  E + L   +       L
Sbjct: 155 LTDEQMERVWSALELLGETK-----GRDTALVHIL-SHGLRAGEIVQLNVGSFDGKLLFL 208

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRG----KPLNPGVF 243
               K ++ R+VPL    R  +  Y          LN   PL            L+    
Sbjct: 209 -PDTKTNEPRLVPLRKESRDVLEAYLRSRREQGEELNSLTPLMISHHASYKGDRLSYHGI 267

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
              + ++    G+      H  RH++AT LL  G D    + + GH      + YT
Sbjct: 268 YFAVEKIGELAGIE-DLHPHQFRHTYATELLLLGVDPSHARKLTGHQSEKAFRRYT 322


>gi|313678682|ref|YP_004056422.1| site-specific recombinase, phage integrase family [Mycoplasma bovis
           PG45]
 gi|312950469|gb|ADR25064.1| site-specific recombinase, phage integrase family [Mycoplasma bovis
           PG45]
          Length = 265

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 53/304 (17%), Positives = 106/304 (34%), Gaps = 43/304 (14%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +K  + +L++    +GLS  T+ SY      F+                  L+Y  +  +
Sbjct: 1   MKRFRTYLKH----QGLSDNTINSYLYGVNYFVNNYK--------------LNYDNLLKY 42

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNEK 132
            +         +++   +  I  +L+++ K  +        +R +K  N   L   ++  
Sbjct: 43  KNFLIDN-FKPKTVNLRIQSINRYLEFINKIDL-------KIRAIKIQNKSYLENVIS-- 92

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
            A  L     L  +   KW       I++ L   G RISE + +  ++I        +  
Sbjct: 93  NADYLFFKRKLKITGFYKW-----YYIVWFLAATGARISELIKIKIEHIQL--GYFDVYS 145

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K  K R + +        L                 LF       ++     + +++  +
Sbjct: 146 KSGKTRRLYIPSK-----LSLSLKKWLLEEKRDSGYLFLNKYNNSISSRGVSQGLKKFAK 200

Query: 253 YLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             GL  +    H+ RH +A + L    D+  +  I+GH  + TT+IY           + 
Sbjct: 201 KFGLDTNVVYPHSFRHLYAKNFLEKFNDISLLADIMGHESIETTRIYLRKTFSEQQKIID 260

Query: 312 EIYD 315
            + D
Sbjct: 261 SVVD 264


>gi|191173558|ref|ZP_03035084.1| site-specific recombinase, phage integrase family [Escherichia coli
           F11]
 gi|190906153|gb|EDV65766.1| site-specific recombinase, phage integrase family [Escherichia coli
           F11]
          Length = 200

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 45/174 (25%), Positives = 69/174 (39%), Gaps = 7/174 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L + +   L+D      + ++     RN  ++ + +  G R SE L L   +I     
Sbjct: 17  KYLTQDEVYRLMD------AAQSISFPERNRCLIMMAFIHGFRASELLDLRLSDIDASGK 70

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            L I+  K       PLLP     I  +        N      LF   + +P++   F  
Sbjct: 71  QLNIRRIKNGFSTTHPLLPDEYNLIKLWLKQRKLIENGVEGDWLFLSRKRRPISRQHFFS 130

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            IR+  +  GL +    H LRH+    L  NG D R +Q  LGH  +  T  YT
Sbjct: 131 IIREAGKRAGLAVKAHPHMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYT 184


>gi|282860290|ref|ZP_06269359.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282586887|gb|EFB92123.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 412

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 106/278 (38%), Gaps = 15/278 (5%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           R    F+     + I I TI +  + E R F+ KR    +   ++  +L  +   +    
Sbjct: 136 RNLREFVENKGVQDIPIGTITEDLFEEYRFFLKKR---GLRASTINSNLCWLSRLMFRAV 192

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
            ++I   +   N +  K+   + R L +   + L+   +     E          +    
Sbjct: 193 SKRIIRCNPFENAKYEKEEKKI-RFLQKGDVMKLMPMRMNDKEAELA------RQMFIFS 245

Query: 164 YGCGLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
              GL IS+  +L  ++I    + Q  +R + +  K+  +  L  + +AI+ +    P  
Sbjct: 246 CFTGLAISDMENLEYKHIQTTAEGQMYIRKERQKTKVEFIVPLHPIAEAIISHCQKEPER 305

Query: 221 LNLNIQLPLFRGIRGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
             +   +             +  V    +  + +  G+    + H  RH+F T  LS G 
Sbjct: 306 SEVQQTVKEKGDHLVFHRDCSRSVMDTKLSIVGKACGIRQRLSYHMARHTFGTMSLSAGI 365

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            + SI  ++GH  +S+TQ+Y  V      + +  +  +
Sbjct: 366 PIESIAKMMGHASISSTQVYAQVTDNKISEDIDRLIAK 403


>gi|269926039|ref|YP_003322662.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269789699|gb|ACZ41840.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 363

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 57/302 (18%), Positives = 106/302 (35%), Gaps = 38/302 (12%)

Query: 20  NWLQN-LEIER-GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +L + LEI +  +   TL  Y+   R        +    +    + +L    ++   S+
Sbjct: 63  EFLSHWLEIIKPQVRPATLADYQNSVR-------NHIVPALGTIKLTKLEPAHLQELYSQ 115

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + +  ++++     I   +K   +  +   +     R  K S    + L  +Q   L
Sbjct: 116 LLAKGLSAKTVRNIHGTIHKAIKDAARWGMLPRNVADIARPPKVSRQELQCLTPEQVRLL 175

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------ 191
           +                R   +L L    G R  E L L   +I   +  ++I       
Sbjct: 176 MQAC----------AGTRYEPLLGLAIATGARQGELLGLRWADIDLQRGVVQITRQLTRQ 225

Query: 192 ------GKGDKIRIVPLLPSVRKAILEYYDLCPFDL-----NLNIQLPLFRGIRGKPLNP 240
                       R V +  S  + +  +  L   +          Q  +F    G P++ 
Sbjct: 226 GTFSEPKTSSGKRSVHVPVSTVELLRRHRSLQLQERLSAGDRWQDQGLVFANTLGGPMDA 285

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYT 299
               R   ++ +  GLP     H+LRH+ A+ LL  G   R IQ  LGH  ++ T Q+Y 
Sbjct: 286 RNLIRAWHRILQQAGLPR-MPFHSLRHTSASLLLRQGVSPRLIQQRLGHADIAVTLQVYA 344

Query: 300 NV 301
           ++
Sbjct: 345 HL 346


>gi|188526798|gb|ACD62280.1| IntI1 integrase [uncultured bacterium]
          Length = 117

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 6/121 (4%)

Query: 182 MDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
             D  T+ ++ GKG K R + L          +     F  + +   P    +R   +  
Sbjct: 2   DFDHGTIIVREGKGSKDRALMLPDG-----HSWPWFWVFAQHTHSTDPRSGVVRRHHMYD 56

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+
Sbjct: 57  QTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 116

Query: 301 V 301
           V
Sbjct: 117 V 117


>gi|229110029|ref|ZP_04239606.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock1-15]
 gi|228673382|gb|EEL28649.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock1-15]
          Length = 369

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 58/315 (18%), Positives = 116/315 (36%), Gaps = 39/315 (12%)

Query: 18  RQNWLQNLEIERGLS--KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            +++L +    + +S  K T   Y+        F+  +    I +  + +L+   I+   
Sbjct: 65  LKDYLNHWLEIKSMSIEKSTFAGYK-------AFINQHVIPSIGMVALHKLNVMHIQKCY 117

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                + I + S+      +KS L    K+ I + +        KK  +  +   E++  
Sbjct: 118 KAAIDKGIANNSILLMHRILKSALNLAVKQNIISRNPTDFAEIPKKEKTPIQTWTEEEVK 177

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
             + +     S E+++      AI       G+R+ E L L  Q+I  ++ T+ I     
Sbjct: 178 KFLAH-----SQESRYHIGYLLAI-----TTGMRLGEVLGLRWQDIDFEKHTVTINQTSG 227

Query: 196 KI-------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-----FRGIRGKP 237
                          R +P+      A+ ++  L   +        L          G+ 
Sbjct: 228 HDNKIKTTAKTNSSKRTIPVPNETIAALKKHKILINKEKLRFGSAYLDQDLINCNEFGRI 287

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
           +    F++   ++   +G+      H LRH+ AT LL  G + + I   LGH  +S T  
Sbjct: 288 IKRAHFRKSFIRMTHKVGI-KEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLS 346

Query: 297 IYTNVNSKNGGDWMM 311
           IY++V      + + 
Sbjct: 347 IYSHVLPNMQEEAVK 361


>gi|222529994|ref|YP_002573876.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222456841|gb|ACM61103.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 392

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 59/334 (17%), Positives = 115/334 (34%), Gaps = 55/334 (16%)

Query: 18  RQNWLQ---NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
            +NWL    +   +  +S+ T   YE   +  +        EK  ++ +R      ++  
Sbjct: 70  LENWLNIWLHQYKKNQISESTFDDYESIIKNHIN----PVLEKYNLKDLR---PEHLQML 122

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNEKQ 133
            +++    +  + +K     + S L    K  +   +        K +     + L  ++
Sbjct: 123 YNEKHKAGLSTKRIKDIHVILHSALNQAIKNGLIVRNVSEATTLPKNTREKEMKVLTIEE 182

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-- 191
               +  +                    L    G+R+ E L+L  Q++  +   + I+  
Sbjct: 183 QKRFLQVLEGERLKPA----------FVLALSTGMRLGEILALKWQDVDLENKRITIRNS 232

Query: 192 ------------------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
                                      +  RI+PL     + ++ +  L   +       
Sbjct: 233 VRRIKNRNEQSEIKTKTVLVLKEPKTENSGRIIPLPDVAYQELVNFKLLQEEEKRQAGSS 292

Query: 228 PL-----FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
            +     F    G P+ P  F R   ++    GL  +   H LRH+FAT LL    + + 
Sbjct: 293 YVDSGFVFTTKVGTPIEPRNFLRTFYRITEKAGL--NINFHALRHTFATRLLEANTNPKV 350

Query: 283 IQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYD 315
           +Q +LGH  +STT  IY++V        + EI D
Sbjct: 351 VQELLGHSDISTTLNIYSHVLFDTKQKAIGEIND 384


>gi|134045674|ref|YP_001097160.1| phage integrase family protein [Methanococcus maripaludis C5]
 gi|132663299|gb|ABO34945.1| phage integrase family protein [Methanococcus maripaludis C5]
          Length = 333

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 67/309 (21%), Positives = 117/309 (37%), Gaps = 14/309 (4%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           +I S + L+E   +L     ER   K+   + + D  +  IFL+F  +     +T   + 
Sbjct: 18  KIESPKRLEEHNPYLIKFIEEREFDKIKESTIKEDVLRLRIFLSFCDDIGKIPET---MD 74

Query: 68  YTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           Y E + F     + +    ++L R  + +K F +  K       +N   +   K  +   
Sbjct: 75  YHEFKRFFVYLEKKRGCTHQTLVRYYNLLKVFYRLFKFTAFNEFNN-ECIER-KTFSKKS 132

Query: 127 RALNEKQAL-TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           +  +       ++D VL            R+  ++ +L+  G R SE + +   +     
Sbjct: 133 KTRSYDDVNNEIMDKVLDEILDGNSATKNRDGLMMLVLWETGCRRSEVIRIKYNDFDFKT 192

Query: 186 STLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG--- 241
             +R+   K  + R V +       I EY          N      +G  GK + PG   
Sbjct: 193 GQIRLTDTKNGEDRYVVVSKKTTNLIREYSSENILKGPENFIFQSEKGKLGKQVKPGHLS 252

Query: 242 -VFQRYIRQLRRYLGLP--LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            VF+R I  L     +        H+LRH  A  LL  G  +  ++ ILGH  + TT IY
Sbjct: 253 EVFRRAIDNLISKGEIEAGKRYVLHSLRHGRAVALLDEGTSVEIVKEILGHSDVKTTMIY 312

Query: 299 TNVNSKNGG 307
            +   +   
Sbjct: 313 AHAKERTKK 321


>gi|11967381|gb|AAG42074.1|AF288684_1 integrase-like protein [Enterococcus faecium]
          Length = 278

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 60/283 (21%), Positives = 117/283 (41%), Gaps = 31/283 (10%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           SK T+  Y    R+   +L             ++L+   +  +    + Q +  +++  +
Sbjct: 22  SKATVSKYLRTVRKLAEYLQG-----------KELTKPRLLEYREILQNQ-VKAQTVNGT 69

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           LS I +FL++              ++ LK        L+E + L+  +   L  + + K 
Sbjct: 70  LSSINAFLEFCGWHD-------CKIKLLKVQRK--AFLDETRELSEAEYKQLLAAAQAKG 120

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
            +     +L +  G G+R+SE   +T +     ++ + ++GK    R V L   +R  +L
Sbjct: 121 NERLYLVMLTIC-GTGIRVSELQHITVEAAQTGRAEICMKGKN---RTVLLQKELRVRLL 176

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFA 270
           +Y      D     +  +FR   GKPL+       +++L     + P     H LRH FA
Sbjct: 177 KYAKELGID-----EGHIFRTRSGKPLDRTNICHDMKKLCASAKVDPRKVFPHNLRHLFA 231

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
               +   +L  +  ILGH R+ TT+IY   ++      + ++
Sbjct: 232 RSFYAIEKNLAHLADILGHSRIETTRIYVAASATAHERILNKM 274


>gi|220931210|ref|YP_002508118.1| phage integrase family protein [Halothermothrix orenii H 168]
 gi|219992520|gb|ACL69123.1| phage integrase family protein [Halothermothrix orenii H 168]
          Length = 391

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 58/325 (17%), Positives = 123/325 (37%), Gaps = 48/325 (14%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +WL +  IE   S L   +Y      + + +  +  + I    ++ L   +++  ++ + 
Sbjct: 72  DWL-HRWIEGRKSTLAYSTYRN----YKVMINNHLADDIGETKLKDLKARQVQELLNDKL 126

Query: 80  TQK-------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRALN 130
            +        +  R++K   S + + L+   K  +   +    +   KK     L    N
Sbjct: 127 EKGKVYGEGGLSPRTVKYIYSTLHTALEQAVKENMIPRNICKAVEVPKKQEEKKL-HTWN 185

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           +KQ      N+ L  + + K+      A+       G+R  E L L  ++I  ++  + +
Sbjct: 186 KKQV-----NIFLKAARDYKYFILHYLAL-----NTGMRRGELLGLQWKDIDMEKKRIEV 235

Query: 191 Q---------------GKGDKIRIVPLLPSVRKAILEYY------DLCPFDLNLNIQLPL 229
           +                     R +P+  +V + +  +        L   +        +
Sbjct: 236 KRQLARTDEGLIFKKVKTKSGNRTIPITDNVVRELKRHQIKQGEKRLALGEAYNKKADLV 295

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
                G P++P    R  + +    GLP     H LRH+FAT  L   G ++++Q ILGH
Sbjct: 296 ASNGIGNPIDPRNLVRDFKDIIEETGLP-EIRYHDLRHTFATLFLEAKGPIKTLQQILGH 354

Query: 290 FRLSTT-QIYTNVNSKNGGDWMMEI 313
             ++ T   Y++V  +   +   ++
Sbjct: 355 SSITVTIDTYSHVTEEMLIEAERKM 379


>gi|218260603|ref|ZP_03475830.1| hypothetical protein PRABACTJOHN_01493 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224449|gb|EEC97099.1| hypothetical protein PRABACTJOHN_01493 [Parabacteroides johnsonii
           DSM 18315]
          Length = 406

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 59/286 (20%), Positives = 116/286 (40%), Gaps = 26/286 (9%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSLKRSL 92
            T+Q YE  TR    F+    E ++    +  L    I  F +  +  +     S    L
Sbjct: 132 KTVQRYETTTRYLEEFIK--KEYQLPDIALNNLEANFISKFDAFLKIEKGCAQNSAITRL 189

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +K  ++   +     +      R  K   + P  L   +       ++L      K +
Sbjct: 190 KNLKKIIRIALENDWIKKDPFAYYR-FKLEETDPEFLTMDEIK-----IILAKEFTIKRV 243

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQG---KGDKIRIVPLLPSVRK 208
           +      ++ ++  GL  S+   L+P++++ D++  L I+    K   +  +P+LP    
Sbjct: 244 EQVRDVFVFCIF-TGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAAS 302

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            + +Y D+      L   LP+        L+      Y++++    G+  + + HT RHS
Sbjct: 303 ILDKYKDVAECTGKL---LPV--------LSNQRMNSYLKEIADVCGIHKNLSTHTARHS 351

Query: 269 FAT-HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +AT   L+NG  + ++  +LGH   S T+ Y  V  +N    M ++
Sbjct: 352 YATSICLANGVSIENVAKMLGHADTSVTKHYARVLDQNIFKDMQKV 397


>gi|13476425|ref|NP_107995.1| integrase [Mesorhizobium loti MAFF303099]
 gi|14027186|dbj|BAB54140.1| integrase [Mesorhizobium loti MAFF303099]
          Length = 359

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 84/249 (33%), Gaps = 24/249 (9%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           +       + +   I   R +   + ++ R ++ +   L+   K            R  K
Sbjct: 79  ERFSAFDQSTLDNLIGTLRQRGNSNATINRKMAALSKLLRKAHKMGDIHSLP--EFRRQK 136

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +     R L   +   L   +   +             +   L   G R+ EAL L   +
Sbjct: 137 ERAGRIRFLERDEEARLFAAIRGRSEDA--------YRLSVFLVDSGCRLGEALGLIWND 188

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I + + +  I  K  + R +P+   V++ I                           L+ 
Sbjct: 189 IQEHRVSFWI-TKSGRSRTIPMTERVKEVIKLPPTEGRRPKGP-----------FTKLSQ 236

Query: 241 GVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             ++      +  +GL        H LRH+ A+ L+  G D+R +Q  LGH  LS T  Y
Sbjct: 237 AQYRAIWNDAKAEVGLGADDQVVPHILRHTCASRLVQGGIDIRRVQMWLGHQTLSMTMRY 296

Query: 299 TNVNSKNGG 307
            ++ + +  
Sbjct: 297 AHLATNDLD 305


>gi|134287698|ref|YP_001109864.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134132348|gb|ABO60083.1| phage integrase family protein [Burkholderia vietnamiensis G4]
          Length = 573

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 115/294 (39%), Gaps = 39/294 (13%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           + LS LT      D   +  FL   T  +  +   R  + T+ R F+       +  RS+
Sbjct: 259 KALSSLT----TRDATDYRAFLRRPTPRERWVGPPRPRTSTDWRPFVD-----NLSARSI 309

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-----RALNEKQAL--TLVDNV 141
             +L+ + +  ++L +++    +    ++ ++ S          A  E + L    + N 
Sbjct: 310 AHALAVLSAMFRWLVEQRYVVANPFAGIK-VRGSKRAMAVETAHAFTEGEWLLTRTIANG 368

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD---QSTLRIQGKGDKIR 198
           L  +         R   +L   Y  GLRISE  + T +N+  D      L + GKG K  
Sbjct: 369 LEWSYGWQAAAAQRLRFMLDFGYATGLRISELANATLRNVEVDAAGDHWLHVTGKGGKPA 428

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR----------GIRGKPLNPGVFQRYIR 248
            V L P  R A+  Y       ++     P+            GI+   L   V +R+ R
Sbjct: 429 RVTLTPLARAALDRYLQERGLAVSRARWNPVTPLIGSLDDGDAGIKPLRLWE-VMRRFFR 487

Query: 249 QLRRYLGLP--------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           Q  + +              T H +RH+ ATH ++ G +L +++  L H  +ST
Sbjct: 488 QAAQIIENDHPPLAEKLRQATPHWMRHTHATHAIAKGVELSAVRDNLRHASIST 541


>gi|323186140|gb|EFZ71495.1| integrase [Escherichia coli 1357]
          Length = 374

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 104/257 (40%), Gaps = 29/257 (11%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNIL 114
           E +    + +L+ T +      R  Q I   ++ R +  +++    L        ++ + 
Sbjct: 140 EAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALRAMFTALISSGHFLNDNPVQ 199

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            ++ +K +      L++ + + L+D  L     E           + +L   G R  E  
Sbjct: 200 GLKGMKVNEREMGYLSKSECVQLLDA-LAENPDE--------RLAVEILLSTGARWGEVA 250

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +L  + ++  + T   + K  K R VP+  S+ + I                  +F    
Sbjct: 251 ALEQRRVLHCRITFS-KTKNSKNRTVPISESLFEKI-----------KKRGGKLVFPT-- 296

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              L+  + +  I+ +     +P     H LRH+FA+H + NGG++ ++Q ILGH ++ T
Sbjct: 297 ---LDYPLVRDVIKTVA--PDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQT 351

Query: 295 TQIYTNVNSKNGGDWMM 311
           T IY ++      D + 
Sbjct: 352 TMIYAHLAPDYLQDAVR 368


>gi|160890930|ref|ZP_02071933.1| hypothetical protein BACUNI_03375 [Bacteroides uniformis ATCC 8492]
 gi|255692284|ref|ZP_05415959.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|293369271|ref|ZP_06615860.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|294643197|ref|ZP_06721025.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294809319|ref|ZP_06768030.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298376855|ref|ZP_06986810.1| integrase [Bacteroides sp. 3_1_19]
 gi|301309523|ref|ZP_07215465.1| integrase [Bacteroides sp. 20_3]
 gi|332877314|ref|ZP_08445062.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|156859929|gb|EDO53360.1| hypothetical protein BACUNI_03375 [Bacteroides uniformis ATCC 8492]
 gi|260622016|gb|EEX44887.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|292635655|gb|EFF54158.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292641463|gb|EFF59653.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294443477|gb|EFG12233.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298266733|gb|EFI08391.1| integrase [Bacteroides sp. 3_1_19]
 gi|300832612|gb|EFK63240.1| integrase [Bacteroides sp. 20_3]
 gi|332684697|gb|EGJ57546.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 411

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 56/292 (19%), Positives = 110/292 (37%), Gaps = 29/292 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K TL  Y+   +    FL   Y  + I ++ +     ++   F+  R  +     ++  
Sbjct: 130 AKGTLLKYKTVYKHLQEFLNIRYHVKDIALKELTPAFISDFEMFL--RTDKHCCTNTVWL 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +  +++ +      +  T         +KK  +    L + +   L++  L +   E  
Sbjct: 188 YVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKDEIRLLMEGKLKNAKQE-- 244

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRI-QGKGDKIRIVPLLPSV 206
                   +       GL  ++  +LT +N     D+   + I + K   +  + LL   
Sbjct: 245 ----LYRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRQKTGVVSNIRLLDIA 300

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           ++ I +Y  LC                R  P+ +       IR + +  G+    T H  
Sbjct: 301 KQIIDKYRGLCE-------------NGRIFPVPHYNTCLAGIRAVAKRCGITKHITWHQS 347

Query: 266 RHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           RH+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +     M  +  +
Sbjct: 348 RHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMENLAAR 399


>gi|324010159|gb|EGB79378.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 57-2]
          Length = 187

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 45/174 (25%), Positives = 69/174 (39%), Gaps = 7/174 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L + +   L+D      + ++     RN  ++ + +  G R SE L L   +I     
Sbjct: 4   KYLTQDEVYKLMD------AAQSMSFPERNRCLIMMAFIHGFRASELLDLRLSDIDASGK 57

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            L I+  K       PLLP     I  +        N      LF   + +P++   F  
Sbjct: 58  QLNIRRIKNGFSTTHPLLPDEYNLIKLWLKQRKLIENGVEGDWLFLSRKRRPISRQHFFS 117

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            IR+  +  GL +    H LRH+    L  NG D R +Q  LGH  +  T  YT
Sbjct: 118 IIREAGKRAGLAVKAHPHMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYT 171


>gi|323344120|ref|ZP_08084346.1| integrase [Prevotella oralis ATCC 33269]
 gi|323094849|gb|EFZ37424.1| integrase [Prevotella oralis ATCC 33269]
          Length = 416

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 60/287 (20%), Positives = 115/287 (40%), Gaps = 25/287 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K T  +Y    R    F+   +  + +    + +    + ++FI     + +   + + 
Sbjct: 137 AKGTYPAYIYTRRTLAEFIEKEFHSKDVAFGQMTEQFIHDYQSFI--LDEKGLAIDTCRH 194

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L+ +K   +   K          +    +     P+AL+ +    + D  L+   H   
Sbjct: 195 YLAIVKKVCRKAYKEGHADRCFFAHFSLPQPKEKTPKALSRESFEKIRD--LVIPEHHAS 252

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGDKIR-IVPLLPSV 206
            I AR+  +       G   ++A+S+T  N+  D +    L+ + K +++R  V LLP  
Sbjct: 253 HILARD--LFLFACYTGTAYADAVSVTRDNLFTDDNGGLWLKYRRKKNELRACVKLLPEA 310

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              I +Y D        + +  LF  +    +     +R ++ L     +    T H  R
Sbjct: 311 LALIEKYRD--------DDRPTLFPMLHYPNM-----RRLMKCLAVLADIREDLTYHAGR 357

Query: 267 HSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           HSFA+ + L  G  + +I  +LGH  L TTQ+Y  V  K   + M +
Sbjct: 358 HSFASLITLEAGVPIETICKMLGHSNLQTTQVYAKVTPKKLFEDMDK 404


>gi|163790313|ref|ZP_02184745.1| integrase [Carnobacterium sp. AT7]
 gi|159874384|gb|EDP68456.1| integrase [Carnobacterium sp. AT7]
          Length = 382

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 116/296 (39%), Gaps = 35/296 (11%)

Query: 47  LIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK 106
           L  +  Y  +   ++ I  +   E    I    T+     S K+  + + S L++ KK+ 
Sbjct: 92  LKIIKRYIPDDYIVRNINSVFIQETIESIYY--TENYSFSSTKQCKTLLNSILEFAKKKT 149

Query: 107 ITTESNILNMRNLKKSNSLP-------RALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           I   + +L +   KK  +         + L   +  T++D +    S        RN+ +
Sbjct: 150 IIAVNPVLEVEIKKKPKTFEQIEKIGNKYLEPDELKTVLDCLRSFKS------GRRNANL 203

Query: 160 LYLLYGCGLRISEALSLTPQNIMDD----QSTLRIQ------------GKGDKIRIVPLL 203
              L   GLR  EA++LT  N  +D      TL                 G   R V L 
Sbjct: 204 TEFLSLTGLRFGEAVALTYDNFKNDFIEVNGTLDYHTHKSSAGIKTTAKTGKANRNVDLS 263

Query: 204 PSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
              ++ I+E      L   + +   +  +F    G P++   +   ++   +  G+  + 
Sbjct: 264 DRAKEIIIEVILENKLLKKEEHFQEKNYIFVTKYGNPIDIATYNTSLKIAAKKCGIEKNL 323

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYD 315
           T+H LRH+  + L   G  L++I   +GH R  TT  IYT+V  K     M ++ D
Sbjct: 324 TSHVLRHTHISILSEIGVPLKAIMDRVGHERPETTLGIYTHVTKKMQQGVMQKLND 379


>gi|116693660|ref|YP_839193.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
 gi|116651660|gb|ABK12300.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
          Length = 565

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 63/329 (19%), Positives = 118/329 (35%), Gaps = 41/329 (12%)

Query: 16  KERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           KE +  +    +ERG  LS LT      D   +  FL   T  +  +   R     E R 
Sbjct: 242 KEAERLILWAIVERGRALSSLT----TDDAIAYRGFLRRPTPRERWVGPPRPRQSVEWRP 297

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F        +  RS   +L+ + +  ++L +++    +    ++   +   L   L+  +
Sbjct: 298 F-----NGSLSARSTAHALTVLSAMFRWLVEQRYVQANPFAGVKV--RGGVLHTGLDVSR 350

Query: 134 ALTLVDNVLLHT-SHETKWIDARN-------SAILYLLYGCGLRISEALSLTPQNIMDDQ 185
             T  + +L+ T +   +W    +         +L   Y  GLR  E +     +I  D+
Sbjct: 351 GFTEGEWLLIRTLADGLEWSYGWSEPAAQRLRFLLDFGYATGLRAGELVGAKLGDIRRDE 410

Query: 186 S---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR----------G 232
                L + GKG +   V L    R A+  +       +  +  +P             G
Sbjct: 411 HGDHWLHVIGKGGRPGKVALPTLARTALDFWLMQRGLPVTPSRWIPSTPLVSSLEEDAAG 470

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLP-------LSTTAHTLRHSFATHLLSNGGDLRSIQS 285
           I+   L   + + ++       G            + H +RH+ ATH L+ G +L  ++ 
Sbjct: 471 IQSTRLWRVIRRFFLLVAGAIEGEQPATAEKLRRASPHWIRHTHATHALARGAELIMVRD 530

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            L H  +STT  Y + +           +
Sbjct: 531 NLRHASISTTSTYLHSDEAQRARQFDRAF 559


>gi|110640587|ref|YP_668315.1| putative phage integrase [Escherichia coli 536]
 gi|300977187|ref|ZP_07173776.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 200-1]
 gi|110342179|gb|ABG68416.1| putative phage integrase [Escherichia coli 536]
 gi|300308376|gb|EFJ62896.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 200-1]
 gi|324010960|gb|EGB80179.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 60-1]
          Length = 187

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 45/174 (25%), Positives = 69/174 (39%), Gaps = 7/174 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L + +   L+D      + ++     RN  ++ + +  G R SE L L   +I     
Sbjct: 4   KYLTQDEVYRLMD------AAQSISFPERNRCLIMMAFIHGFRASELLDLRLSDIDASGK 57

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            L I+  K       PLLP     I  +        N      LF   + +P++   F  
Sbjct: 58  QLNIRRIKNGFSTTHPLLPDEYNLIKLWLKQRKLIENGVEGDWLFLSRKRRPISRQHFFS 117

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            IR+  +  GL +    H LRH+    L  NG D R +Q  LGH  +  T  YT
Sbjct: 118 IIREAGKRAGLAVKAHPHMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYT 171


>gi|253751660|ref|YP_003024801.1| tyrosine recombinase XerC [Streptococcus suis SC84]
 gi|253755625|ref|YP_003028765.1| tyrosine recombinase XerC [Streptococcus suis BM407]
 gi|229892111|sp|A4W104|XERS_STRS2 RecName: Full=Tyrosine recombinase xerS
 gi|229892112|sp|A4VUQ8|XERS_STRSY RecName: Full=Tyrosine recombinase xerS
 gi|251815949|emb|CAZ51565.1| tyrosine recombinase XerC [Streptococcus suis SC84]
 gi|251818089|emb|CAZ55881.1| tyrosine recombinase XerC [Streptococcus suis BM407]
 gi|319758087|gb|ADV70029.1| tyrosine recombinase XerC [Streptococcus suis JS14]
          Length = 356

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 68/353 (19%), Positives = 127/353 (35%), Gaps = 50/353 (14%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYTEEK 57
           + L EI+ + +L+  Q+ L         S  TL  Y  + R+F  +L      A      
Sbjct: 11  DQLKEIMPWFVLEYYQSKLAVP-----YSFTTLYEYLKEYRRFFEWLQDSDLVAVERIAD 65

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQ----------KIGDRSLKRSLSGIKSFLKYLKKRKI 107
           I +  +  L+  ++ AFI   R +           +   ++ R+LS + S  KYL +   
Sbjct: 66  IPLDVLEHLTKKDMEAFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLFKYLTEEVE 125

Query: 108 TTESNILNMRNLKKSNSLP--------RALNEKQALTLVDNVL--LHTSHETKWIDARNS 157
             +      RN+ K  S          RA N KQ L L D  +  L    +   ++    
Sbjct: 126 NEQGEPYFYRNVMKKVSTKKKKETLAARAENIKQKLFLGDETMEFLDYVDKEYQVNLSKR 185

Query: 158 AILYL-------------LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           A+                L   G+R+SEA++L  +++  +   + +  KG K   V +  
Sbjct: 186 ALSSFQKNKERDLAILALLLASGVRLSEAVNLDLRDVNLNMMIIEVTRKGGKRDSVNVAG 245

Query: 205 SVRKAILEYYDLCPFDLNL-NIQLPLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLST 260
             +  +  Y  +              F          ++    ++ + +        +  
Sbjct: 246 FAKPYLEAYMGIRQQRYKAEKTDTAFFLSEYRGLPNRIDASSIEKMVAKYS--ADFKIRV 303

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           T H LRH+ AT L         +   LGH     T +YT++ +    + + ++
Sbjct: 304 TPHKLRHTLATRLYDATKSQVLVSHQLGHANTQVTDLYTHIVNDEQKNALDQL 356


>gi|265753988|ref|ZP_06089343.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|333029238|ref|ZP_08457299.1| integrase family protein [Bacteroides coprosuis DSM 18011]
 gi|263235702|gb|EEZ21226.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|332739835|gb|EGJ70317.1| integrase family protein [Bacteroides coprosuis DSM 18011]
          Length = 390

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 97/278 (34%), Gaps = 39/278 (14%)

Query: 51  AFYTEEKITIQTIRQLSYTEIRAFISKRRT-----------QKIGDRSLKRSLSGIKSFL 99
            +  E   T  T+ +++    R ++   RT           + I   +  R L    + L
Sbjct: 126 KYLEESNQTFITLEEVNADFCRGYVKFLRTFPNSHCKYIEPRPISQNTASRYLGMFSTTL 185

Query: 100 KYLKKRKITTESNILNMRN-----LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
               ++ I   + +  +        K        L  ++   L+       + ++   + 
Sbjct: 186 NNAVRQGIIRNNPMKELDAKERIQPKDGKK--EYLTIEELKALM-------ATDSYRPEV 236

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           + + I       GLR+S+   L P +I    D     I  +  K     ++P   +A   
Sbjct: 237 KQAFIFACF--TGLRLSDMYKLAPIHIFKTPDGKGEYIDMEMQKTEKPVIIPLSEEA--- 291

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                       I  P F      P    V  R +R+     G+    + H  RH+F T 
Sbjct: 292 ---KRWLPKPKGITTPFF----DIPTTQTVIGRALRKWAEAAGVEKHISFHCSRHTFGTM 344

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           +L+ G DL +   ++GH  + TT+IY  +  K   + +
Sbjct: 345 MLTLGADLFTTSKLMGHTNIQTTEIYAKIVDKKKEEAI 382


>gi|253752228|ref|YP_003025369.1| phage integrase [Streptococcus suis SC84]
 gi|253754054|ref|YP_003027195.1| phage integrase [Streptococcus suis P1/7]
 gi|251816517|emb|CAZ52153.1| putative phage integrase [Streptococcus suis SC84]
 gi|251820300|emb|CAR46803.1| putative phage integrase [Streptococcus suis P1/7]
 gi|292558819|gb|ADE31820.1| integrase [Streptococcus suis GZ1]
 gi|319758617|gb|ADV70559.1| putative phage integrase [Streptococcus suis JS14]
          Length = 380

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 60/345 (17%), Positives = 118/345 (34%), Gaps = 64/345 (18%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQS--YEC-----DTRQFLIFLAFYTEEKIT 59
           P+ ++FE  +  + WL++        K T+++  Y       D     +F A Y  +KI+
Sbjct: 63  PDRITFE--EVYKIWLEHY-------KNTVKASTYARQKAQADLHIVPVFGACYV-DKIS 112

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           +   ++ +    + +           +     +   K  L +        ++ +  +   
Sbjct: 113 LPMCQKQAQEWFKGY-----------KKYANFIGMTKMVLDFAVNLGYIHDNPMKKIIKP 161

Query: 120 KKSNSLPR-------ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           +KS+ +           + +     +D V      E        + I  LL   G+R SE
Sbjct: 162 RKSSEVDEEEKKKENFYSREDLQKFLDCVAKEDKEEI-------ACIFRLLAFTGMRKSE 214

Query: 173 ALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAILEYYDL 216
            L+L  +++    S L +                       R + L P     + ++   
Sbjct: 215 VLALRWKDLDLFTSRLSVSQIVAYGENNSIVYQTPKTKKSKRTITLDPITVSILKKWEKT 274

Query: 217 CPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
             F        P   +F    G   +       +R + +   LP   T H  RH+  + L
Sbjct: 275 RQFLNFPQRVKPTDLVFPAETGNAHSFDYINYNLRCILKKYDLPY-ITPHGFRHTHCSLL 333

Query: 274 LSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQT 317
              G  ++ +Q  LGH  + TT  IY +V  +N  +   E + Q 
Sbjct: 334 FEAGASIKEVQERLGHEDIKTTMNIYAHVT-ENTKEKTAEKFAQF 377


>gi|229190701|ref|ZP_04317697.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 10876]
 gi|228592834|gb|EEK50657.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 10876]
          Length = 369

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 57/315 (18%), Positives = 115/315 (36%), Gaps = 39/315 (12%)

Query: 18  RQNWLQNLEIERGLS--KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            +++L +    + +S  K T   Y         F+  +    I +  + +L+   I+   
Sbjct: 65  LKDYLNHWLEIKSISIEKSTFAGYR-------AFINQHVIPSIGMVALHKLNVIHIQKCY 117

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                + I + S+      +KS L    K+ I + +        KK     +   E++  
Sbjct: 118 KTAIDKGIANNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKPPIQTWTEEEVK 177

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
             + +     S E+++      AI       G+R+ E L L  Q+I  ++ T+ I     
Sbjct: 178 KFLAH-----SQESRYHIGYLLAI-----TTGMRLGEVLGLRWQDIDFEKHTVTINQTSG 227

Query: 196 KI-------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-----FRGIRGKP 237
                          R +P+     +A+ ++  L   +        L          G+ 
Sbjct: 228 HDNKIKKTAKTNSSKRTIPVPNETIEALKKHKILINKEKLRFGSAYLDQDLINCNEFGRI 287

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
           +    F++   ++   +G+      H LRH+ AT LL  G + + I   LGH  +S T  
Sbjct: 288 IKRAHFRKSFIRMTHKVGI-KEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLS 346

Query: 297 IYTNVNSKNGGDWMM 311
           +Y++V      + + 
Sbjct: 347 VYSHVLPNMQEEAVK 361


>gi|225387163|ref|ZP_03756927.1| hypothetical protein CLOSTASPAR_00915 [Clostridium asparagiforme
           DSM 15981]
 gi|225046736|gb|EEG56982.1| hypothetical protein CLOSTASPAR_00915 [Clostridium asparagiforme
           DSM 15981]
          Length = 284

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 46/299 (15%), Positives = 111/299 (37%), Gaps = 35/299 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++ +   L   + +S  T   Y    RQF                 ++L+   ++ +   
Sbjct: 19  QERFRDYLTS-KNMSTNTTCVYCYAVRQFFEIH-------------KELTIATLQLYKVY 64

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +    +++   +  +  +++YL  +      + + M  +++   L R +++     L
Sbjct: 65  LL-EHYKPQTVNLRIRALNCYMEYLNHK-----DSKMTMIKIQQKMYLDRIISQADYEYL 118

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                       +  +     ++  +   G+RISE +     ++      +    KG+K+
Sbjct: 119 -------KRRLWEDEEFSYYFVIRYMAATGVRISELVKFEIADVKFGFKDIY--SKGNKM 169

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R + +   +++    +      + +   +  LF    G P+     +  ++       L 
Sbjct: 170 RRIYIPTVLKQKTEVWL-----EKSKRNKGALFLNRFGNPITASGIRGQLKTFALRYNLD 224

Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                 H+ RH FA + + N GD+  +  +LGH  + TT+IY   +S      + +I D
Sbjct: 225 PEVVYPHSFRHRFAKNFIENSGDIALLSDLLGHESIETTRIYLRRSSSEQYRIVNKIVD 283


>gi|270296259|ref|ZP_06202459.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273663|gb|EFA19525.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 418

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 51/308 (16%), Positives = 102/308 (33%), Gaps = 31/308 (10%)

Query: 11  SFELLKERQNWLQNL-EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           + +L + R N+++    ++R     +  S   + R+    L  + +    +    Q+   
Sbjct: 121 AEQLERSRSNFIEYFDHVQRTRHAHSSDSIIVNWRRVHELLKIFAKGDTIL--FSQIDLK 178

Query: 70  EIRAFISKR--------RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            + +F            +   I   +     S  K+ LK        T      ++ +++
Sbjct: 179 MVESFRQFIMNAPQGGTKRGTISQNTAATYFSIFKAGLKQAFIDGYLTIDISAKVKGIQE 238

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
             S    L  ++   L               D             G+R  +   L    +
Sbjct: 239 RESRREYLTVEELNRLAQ----------TPCDPLLKRAALFSALTGIRHCDIQKLKWSEV 288

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
                  R+     K + V  +P   +A     +    +L +   LP          +P 
Sbjct: 289 EMFNGGYRLNFTQQKTKGVEYMPISEQAYNLCGEPKEGELLVFAGLP----------DPS 338

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              R +++     G+    T H  RHS+AT  L+ G D+ ++  +LGH  + TTQ+Y  V
Sbjct: 339 WINRPVKKWIEAAGITKHITFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKV 398

Query: 302 NSKNGGDW 309
             +     
Sbjct: 399 VDEKKEKA 406


>gi|255994002|ref|ZP_05427137.1| site-specific recombinase, phage integrase family [Eubacterium
           saphenum ATCC 49989]
 gi|255993670|gb|EEU03759.1| site-specific recombinase, phage integrase family [Eubacterium
           saphenum ATCC 49989]
          Length = 324

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 55/302 (18%), Positives = 106/302 (35%), Gaps = 30/302 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + WL     E  +S+ T+++     R      A       T   ++Q++ T  + ++  
Sbjct: 39  FRAWLDLKRFE--ISEGTVKNILARWRNNYARYATRPVASFTAPELQQITLTLAKRYVD- 95

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR--ALNEKQAL 135
                     +K   S +++  K+ K+    +     N+   K     P      +++  
Sbjct: 96  ----------IKHPFSVLRNIFKHAKRLGFISTDPTANLMVPKPRRRAPTNNYYTKEELD 145

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
             +        H+            YLL   GLR  EAL+L   +    + +L ++    
Sbjct: 146 KFLRLAKEQLPHQW-------YVFFYLLAHTGLRRGEALALKWID--LSRDSLLVRRTLS 196

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQRYIRQLR 251
                  +    K    +  +       N+ + LF        N         + IR L 
Sbjct: 197 ATLTGHAISDTAKTSASHRRVYIDSDVYNLLISLFSSSEFIFSNTKGGCITSSQPIRWLH 256

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           +  G+    + H  RH+  + L S G D+ ++Q  LGH  L TT Q+Y +V   +    +
Sbjct: 257 KIKGI-RYISPHGFRHTHCSLLFSAGVDIPTVQKRLGHSDLKTTMQVYNHVYRDDEFRAL 315

Query: 311 ME 312
            +
Sbjct: 316 DK 317


>gi|107027627|ref|YP_625138.1| phage integrase [Burkholderia cenocepacia AU 1054]
 gi|105897001|gb|ABF80165.1| phage integrase [Burkholderia cenocepacia AU 1054]
          Length = 565

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 64/329 (19%), Positives = 118/329 (35%), Gaps = 41/329 (12%)

Query: 16  KERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           KE +  +    +ERG  LS LT      D   +  FL   T  +  +   R     E R 
Sbjct: 242 KEAERLILWAIVERGRALSSLT----TDDAIAYRGFLRRPTPRERWVGPPRPRQSVEWRP 297

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F        +  RS   +L+ + +  ++L +++    +    ++   +   L   L+  +
Sbjct: 298 F-----NGSLSARSTAHALTVLSAMFRWLVEQRYVQANPFAGVKV--RGGVLHTGLDVSR 350

Query: 134 ALTLVDNVLLHT-SHETKWIDARN-------SAILYLLYGCGLRISEALSLTPQNIMDDQ 185
             T  + +L+ T +   +W    +         +L   Y  GLR  E +     +I  D+
Sbjct: 351 GFTEGEWLLIRTLADGLEWSYGWSEPAAQRLRFLLDFGYATGLRAGELVGAKLGDIRRDE 410

Query: 186 S---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
                L + GKG +   V L    R A+  +       +  +  +P    +     +   
Sbjct: 411 HGDHWLHVIGKGGRPGKVALPTLARTALDFWLMQRGLPVTPSRWIPSTPLVSSLEEDAAG 470

Query: 243 FQ--RYIRQLRRY---------------LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
            Q  R  R +RR+                      + H +RH+ ATH L+ G +L  ++ 
Sbjct: 471 IQSTRLWRVIRRFFLLVAGAIEGEQPATAEKLRRASPHWIRHTHATHALARGAELIMVRD 530

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            L H  +STT  Y + +           +
Sbjct: 531 NLRHASISTTSTYLHSDEAQRARQFDRAF 559


>gi|167628712|ref|YP_001679211.1| phage integrase [Heliobacterium modesticaldum Ice1]
 gi|167591452|gb|ABZ83200.1| phage integrase [Heliobacterium modesticaldum Ice1]
          Length = 421

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 53/300 (17%), Positives = 120/300 (40%), Gaps = 23/300 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L++L + R   + T++ +  +  + L        +   ++ I  +    I    + 
Sbjct: 117 FAEYLEDLRL-RSYRERTVEDHRLNILKVLKEF-----DASGVKNIAHIVPANIYNIFNG 170

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              +           S ++ FL++L K ++  +   + + +++ S+ +P    + +   L
Sbjct: 171 IHRK-------NSFYSTLRQFLRFLFKNRVLHDDYSVLVPSVRYSSPVPSIYTKSEITQL 223

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDK 196
           +          +     RN AI+ L    GLR  + ++L   ++      +  IQ K   
Sbjct: 224 L-----KAIDTSTKTGKRNYAIVMLALRLGLRTGDIVNLKISDVNFTNKEICFIQEKTQL 278

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            + + LLP + K++L Y      D + +  + L      +PL P +   +I       G+
Sbjct: 279 PQRLVLLPEIEKSLLSYLSTARPDCD-SPNIFLSLLAPYRPLTPSLIWAHIHTHIESAGI 337

Query: 257 ---PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                 + AH+LR + A+ L++       ++ ILGH    + + Y   + ++     +EI
Sbjct: 338 IIGERKSGAHSLRMTLASELVAEKVPYDVVRKILGHDDPVSIKHYVKFDIESLRSCAIEI 397



 Score = 40.3 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 15/136 (11%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +E +++L +L +  G S+ T+Q+Y     QF  FL        + +   Q        
Sbjct: 13  LNEELESFLNHL-LGLGYSENTVQNYRWIVNQFERFLLENHYRNYSNEIADQ-------- 63

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+S     +    +  R+L G+    ++            L +R+ +     P       
Sbjct: 64  FLSTVSESRRYTENTVRTLKGM--LYRFDAFMSGRD----LALRSPRVVRKCPIQFEGVF 117

Query: 134 ALTLVDNVLLHTSHET 149
           A  L D  L      T
Sbjct: 118 AEYLEDLRLRSYRERT 133


>gi|253753562|ref|YP_003026703.1| tyrosine recombinase XerC [Streptococcus suis P1/7]
 gi|251819808|emb|CAR45750.1| tyrosine recombinase XerC [Streptococcus suis P1/7]
          Length = 356

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 68/353 (19%), Positives = 127/353 (35%), Gaps = 50/353 (14%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYTEEK 57
           + L EI+ + +L+  Q+ L         S  TL  Y  + R+F  +L      A      
Sbjct: 11  DQLKEIMPWFVLEYYQSKLAVP-----YSFTTLYEYLKEYRRFFEWLQDSDLVAVERIAD 65

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQ----------KIGDRSLKRSLSGIKSFLKYLKKRKI 107
           I +  +  L+  ++ AFI   R +           +   ++ R+LS + S  KYL +   
Sbjct: 66  IPLDVLEHLTKKDMEAFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLFKYLTEEVE 125

Query: 108 TTESNILNMRNLKKSNSLP--------RALNEKQALTLVDNVL--LHTSHETKWIDARNS 157
             +      RN+ K  S          RA N KQ L L D  +  L    +   ++    
Sbjct: 126 NEQGEPYFYRNVMKKVSTKKKKETLAARAENIKQKLFLGDETMEFLDYVDKEYQVNLSKR 185

Query: 158 AILYL-------------LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           A+                L   G+R+SEA++L  +++  +   + +  KG K   V +  
Sbjct: 186 ALSSFQKNKERDLAILALLLASGVRLSEAVNLDLRDVNLNMMIIEVTRKGGKRDSVNVAG 245

Query: 205 SVRKAILEYYDLCPFDLNL-NIQLPLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLST 260
             +  +  Y  +              F          ++    ++ + +        +  
Sbjct: 246 FAKLYLEAYMGIRQQRYKAEKTDTAFFLSEYRGLPNRIDASSIEKMVAKYS--ADFKIRV 303

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           T H LRH+ AT L         +   LGH     T +YT++ +    + + ++
Sbjct: 304 TPHKLRHTLATRLYDATKSQVLVSHQLGHANTQVTDLYTHIVNDEQKNALDQL 356


>gi|309791407|ref|ZP_07685914.1| integrase family protein [Oscillochloris trichoides DG6]
 gi|308226540|gb|EFO80261.1| integrase family protein [Oscillochloris trichoides DG6]
          Length = 382

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 61/336 (18%), Positives = 114/336 (33%), Gaps = 53/336 (15%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT------ 80
            +R L++ T+++Y      F+ +   +   ++    +  L+      +    R       
Sbjct: 47  AQRHLARRTIETYLVALNLFVRWAERHGRSRLGDLRLDDLTT-----YARSLRRRNYDLS 101

Query: 81  -------------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL---NMRNLKKSNS 124
                        +++  R++   +  +  FL  +                ++ +     
Sbjct: 102 QRAQQAQAAGEPLERLSARTIHGYVRPLVGFLALVDSYGALNFRVAAIQDEIKRVLPRLP 161

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKW------IDARNSAILYLLYGCGLRISEALSLTP 178
            P A        LV       S +         I  RN+A+++LL+  G RISE L L  
Sbjct: 162 EPVAPTPPDLRRLVTYYDRPRSPDDDRTERLVLIRLRNAALVHLLFSSGARISECLGLDV 221

Query: 179 QNIMDDQSTL---RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIR 234
            ++  D+  L    I GKG K   + +  +  +A+  Y +   +    +     L R   
Sbjct: 222 GDVCRDRKILQQATIYGKGRKEGRLFIRRAAERALQRYLEARNWPPATSALFESLDRRTA 281

Query: 235 GKPLNPGVFQRYIRQLRR-------------YLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
           G  L      R +                     L  +T+ HT RH    HLL+ G  L 
Sbjct: 282 GTRLTRTTGWRVVHHAAEVLAAQLTLEGKVDEAALLRTTSPHTFRHFVGYHLLNEGVALA 341

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            +  IL H  +  T+ Y    +      + E++DQ 
Sbjct: 342 EVSQILRHHSVEVTRSY---YAAYRDVQLQEVHDQF 374


>gi|306822058|ref|ZP_07455442.1| phage integrase [Bifidobacterium dentium ATCC 27679]
 gi|304554658|gb|EFM42561.1| phage integrase [Bifidobacterium dentium ATCC 27679]
          Length = 273

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 63/311 (20%), Positives = 119/311 (38%), Gaps = 45/311 (14%)

Query: 6   LPEIVSFELLKERQN-WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           +    +  L  E  N WL +L+   G S  TL +  C        L           +  
Sbjct: 1   MHRSQATPLWAEYINGWLDSLKAA-GYSTATLHTRRCQMTAMGNALGG---------SPL 50

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            +    +  + +   +++    + K + +   SF ++++   +  +     + ++++  +
Sbjct: 51  DVGGNGLVGYFA---SKEWKPETRKSARNATVSFFRWIRAHDLRDDDPSQELPSVRRPQT 107

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
            PR   +K  L    + L   + E          +L L   CGLR SE  S++  ++MDD
Sbjct: 108 HPRPCPDKVIL----SALSKANDEE-------QLMLRLGAECGLRRSEIASVSSTDVMDD 156

Query: 185 --QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
               +L ++GK DK R+VPL   +   I  +               LF G     +    
Sbjct: 157 LVGRSLIVRGKNDKQRLVPLPDDLADLITAH------------HDYLFPGRWQGHVEASY 204

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             +++ +L          T H+LRH +AT       DL  +  +LGH  + TTQ Y  + 
Sbjct: 205 IGKHLSRLLD------GWTTHSLRHRYATRAYEATHDLLLVSKLLGHASVETTQRYVAMP 258

Query: 303 SKNGGDWMMEI 313
            +     +  +
Sbjct: 259 DERLRAGLEAV 269


>gi|253563451|ref|ZP_04840908.1| integrase [Bacteroides sp. 3_2_5]
 gi|251947227|gb|EES87509.1| integrase [Bacteroides sp. 3_2_5]
          Length = 420

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 98/260 (37%), Gaps = 19/260 (7%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           + I+++ +  +    +RA +   +   I   +     S +K+ LK     +  T      
Sbjct: 173 KAISVKLLEDIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEYLTVDISAK 232

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           ++ +        AL   +   LV          T   D             GLR S+  +
Sbjct: 233 VKGITNIEKPRVALTMNEVQMLV---------GTPCKDDVLKRAFLFSILTGLRHSDIQT 283

Query: 176 LTPQN-IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           L  +      + T +      K +     P +++A+         D  L     +F G+ 
Sbjct: 284 LKWKQIQQTSKGTWQAVVIQQKTKRPDYKPVIQQALQLCGIRPDDDEAL-----VFEGLT 338

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
               +     R ++      G+    T H  RHS+A+ LL NG D+ +I+S++GH  + T
Sbjct: 339 ----DASWISRPLKVWIEASGIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKT 394

Query: 295 TQIYTNVNSKNGGDWMMEIY 314
           TQIYT++ ++        ++
Sbjct: 395 TQIYTHIVNEQKEKAANTLH 414


>gi|170756250|ref|YP_001782987.1| phage integrase family site specific recombinase [Clostridium
           botulinum B1 str. Okra]
 gi|169121462|gb|ACA45298.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum B1 str. Okra]
          Length = 199

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 81/190 (42%), Gaps = 10/190 (5%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L +++A+ L + ++            R+ A+  + Y CGLR SE   +   +   D+ 
Sbjct: 10  KYLTQQEAIRLFNAIIFS----DNSHAVRDLALFRVAYRCGLRASEISLIKLDDYNADKG 65

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            L  +  KG     + L  + +K +  Y        N      LF+  +  P++      
Sbjct: 66  DLYCKRLKGSNNNTIRLDVTTKKTLDAYIRDYKISCNSET---LFKSQKNNPISRQTLDY 122

Query: 246 YIRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            +++  +   +   +    HTL+H+ A HL  +  D++ +Q  LGH  +S T+IY    +
Sbjct: 123 LMKKYCKIANISDKSKHHFHTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEIYFQFTT 182

Query: 304 KNGGDWMMEI 313
           K      M++
Sbjct: 183 KQQEKMYMKL 192


>gi|300855859|ref|YP_003780843.1| putative integrase/recombinase [Clostridium ljungdahlii DSM 13528]
 gi|300435974|gb|ADK15741.1| putative integrase/recombinase [Clostridium ljungdahlii DSM 13528]
          Length = 199

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 83/201 (41%), Gaps = 10/201 (4%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           +K +   + L +++   L   ++    +       R+ AI  + Y CGLR SE   +  +
Sbjct: 3   RKGDRKVKYLTQEEVKDLFKAII----NLDSTHAVRDLAIFRVAYRCGLRASEIGLIKLE 58

Query: 180 NIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           +    +  +  +  KG     + L    + A+  Y        N      LF+  RGKP+
Sbjct: 59  DYNASKGAIYCKRLKGSYNNTIRLDVKTKNALDTYIHESKLSSNSEF---LFKSQRGKPI 115

Query: 239 NPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           +       +++   Y  +        H+++H+ A HL  +  D++ +Q  LGH  ++ T+
Sbjct: 116 SRQTLDYMMKKYCSYANIYDKSKYHFHSIKHTTAVHLAESDMDIKELQWWLGHKSVTNTE 175

Query: 297 IYTNVNSKNGGDWMMEIYDQT 317
           IY    +K       ++  ++
Sbjct: 176 IYFQFTTKQQEKMYSKLEAKS 196


>gi|206578497|ref|YP_002236690.1| type 1 fimbriae regulatory protein FimE [Klebsiella pneumoniae 342]
 gi|288933662|ref|YP_003437721.1| integrase [Klebsiella variicola At-22]
 gi|206567555|gb|ACI09331.1| type 1 fimbriae regulatory protein FimE [Klebsiella pneumoniae 342]
 gi|288888391|gb|ADC56709.1| integrase family protein [Klebsiella variicola At-22]
          Length = 202

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 67/174 (38%), Gaps = 7/174 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R L  K+   ++       +        R+  ++ L +  G+RISE L L   ++   + 
Sbjct: 5   RFLTAKEVQAMMQ------AARQGPTGERDYCLILLAFRHGMRISELLDLHYHDLDLHEG 58

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            + ++  K     I PL    R+AI  +  +            LF   RG PL+     R
Sbjct: 59  RVNVRRLKNGFSTIHPLRFDEREAIERWSQVRAGWKAAAKTDALFISRRGTPLSRQQAYR 118

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            IR      G    T  H LRH+    L   G D R IQ  LGH  +  T  YT
Sbjct: 119 IIRSAGENAGTVTHTHPHMLRHACGYELAERGTDTRLIQDYLGHRNIRHTVRYT 172


>gi|82751630|ref|YP_417371.1| integrase [Staphylococcus aureus RF122]
 gi|82657161|emb|CAI81601.1| integrase [Staphylococcus aureus RF122]
          Length = 390

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 100/290 (34%), Gaps = 39/290 (13%)

Query: 52  FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111
            +  E+   + I+ ++  E + F++    Q      +   ++      KY    K+    
Sbjct: 92  HHAIERFNNKPIQTINKHEYQRFVNDISAQ-YSKNYVDSIITSTNMIFKYAYDMKLIRIM 150

Query: 112 NILNMRNLKKSNSL---------PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
              +++  KK  S+          + L + +    ++    H S +  +       +   
Sbjct: 151 PSEDIKRPKKKTSVEELEDTEIHKKFLEKDELFQFLEVAKNHHSPQNSFE------VFCT 204

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV------------------PLLP 204
           L   G+R  E L+L   +I  + +T+ I                            P+ P
Sbjct: 205 LAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNNNKKQFQILTPKTESSIGKIPVDP 264

Query: 205 SVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LST 260
            V K +  Y           + +    +F  + G PL     Q +I+ + +   +     
Sbjct: 265 HVIKLLKNYKVDVQDTWKNGLYVDNNFVFTDVNGYPLVIKKLQLWIKAILKKTDITNKQI 324

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDW 309
           + H+ RH+    L+  G  ++ IQ  L H  ++TT  IY  + +    D 
Sbjct: 325 STHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKITNSYKKDA 374


>gi|283785697|ref|YP_003365562.1| phage integrase [Citrobacter rodentium ICC168]
 gi|282949151|emb|CBG88759.1| putative phage integrase [Citrobacter rodentium ICC168]
          Length = 326

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 56/292 (19%), Positives = 111/292 (38%), Gaps = 55/292 (18%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+N  IER   + T+++                   +    + +L   EI     +R T 
Sbjct: 76  LENGAIERQQLEKTIRA-------------------LGNPAVNRLDKREIARHRGERLTD 116

Query: 82  KIGDRSLKR---SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            I   ++ R    LSG+  F    K  +   E+    ++ L+++      L +++   L+
Sbjct: 117 GISASTINRDVYRLSGM--FTALSKLGEFRVENPCHGLQPLREAQPPMTYLTKQEIARLL 174

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +           +++  N  +  L    G R +E  +L  + +   + T  ++ K  K R
Sbjct: 175 E-----------FLEGDNRRVALLCLSTGARWNEGSTLRAEQVNHGRVTF-LKTKNGKKR 222

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            VP+  ++ + I        FD+N                     +R          LP 
Sbjct: 223 TVPISEALEREIKTCETGPLFDVNYAQF-------------REQLRRV------KPDLPR 263

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
             + H LRH+FA+  + NGG++ ++Q I+GH  +  T +Y ++        +
Sbjct: 264 GQSTHVLRHTFASWFMMNGGNIIALQQIMGHASIKQTMVYAHLAPDFLQHAI 315


>gi|150007390|ref|YP_001302133.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149935814|gb|ABR42511.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 248

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 103/240 (42%), Gaps = 20/240 (8%)

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           +  +      +++  L+ +K   +   K       +  +    KK+ + PRAL+ +    
Sbjct: 13  QLVSTGYAIDTVRHHLAILKKICRLAYKEGYADRIHFQHFTLPKKTETTPRALSRESFER 72

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGK 193
           + D  +   ++    I AR+  +       G+  ++ +S+T +N+  D+     L+ + K
Sbjct: 73  IRDVEI--PAYRKSHILARD--MFLFGCYTGVCYADVVSITHENLYTDEDGALWLKYRRK 128

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            +++R    L     A++E Y     D        LF  +    L     +R+++ L   
Sbjct: 129 KNELRASVKLLPEAIALIEKYHSGDRDT-------LFPLLHWSNL-----RRHMKALAAL 176

Query: 254 LGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            G+      H  RHSFA+ + L  G  + +I  +LGH  +STTQ+Y  V+ K   + M +
Sbjct: 177 AGIKDDLCYHQARHSFASLITLEAGVPIETISRMLGHSDISTTQVYARVSPKKLFEDMDK 236


>gi|146318535|ref|YP_001198247.1| site-specific tyrosine recombinase XerS [Streptococcus suis
           05ZYH33]
 gi|146320732|ref|YP_001200443.1| site-specific tyrosine recombinase XerS [Streptococcus suis
           98HAH33]
 gi|145689341|gb|ABP89847.1| Integrase [Streptococcus suis 05ZYH33]
 gi|145691538|gb|ABP92043.1| Integrase [Streptococcus suis 98HAH33]
 gi|292558306|gb|ADE31307.1| Phage integrase [Streptococcus suis GZ1]
          Length = 357

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 68/353 (19%), Positives = 127/353 (35%), Gaps = 50/353 (14%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYTEEK 57
           + L EI+ + +L+  Q+ L         S  TL  Y  + R+F  +L      A      
Sbjct: 12  DQLKEIMPWFVLEYYQSKLAVP-----YSFTTLYEYLKEYRRFFEWLQDSDLVAVERIAD 66

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQ----------KIGDRSLKRSLSGIKSFLKYLKKRKI 107
           I +  +  L+  ++ AFI   R +           +   ++ R+LS + S  KYL +   
Sbjct: 67  IPLDVLEHLTKKDMEAFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLFKYLTEEVE 126

Query: 108 TTESNILNMRNLKKSNSLP--------RALNEKQALTLVDNVL--LHTSHETKWIDARNS 157
             +      RN+ K  S          RA N KQ L L D  +  L    +   ++    
Sbjct: 127 NEQGEPYFYRNVMKKVSTKKKKETLAARAENIKQKLFLGDETMEFLDYVDKEYQVNLSKR 186

Query: 158 AILYL-------------LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           A+                L   G+R+SEA++L  +++  +   + +  KG K   V +  
Sbjct: 187 ALSSFQKNKERDLAILALLLASGVRLSEAVNLDLRDVNLNMMIIEVTRKGGKRDSVNVAG 246

Query: 205 SVRKAILEYYDLCPFDLNL-NIQLPLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLST 260
             +  +  Y  +              F          ++    ++ + +        +  
Sbjct: 247 FAKPYLEAYMGIRQQRYKAEKTDTAFFLSEYRGLPNRIDASSIEKMVAKYS--ADFKIRV 304

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           T H LRH+ AT L         +   LGH     T +YT++ +    + + ++
Sbjct: 305 TPHKLRHTLATRLYDATKSQVLVSHQLGHANTQVTDLYTHIVNDEQKNALDQL 357


>gi|327413047|emb|CAX68076.1| putative phage integrase [Salmonella enterica subsp. VII]
          Length = 337

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 52/317 (16%), Positives = 117/317 (36%), Gaps = 37/317 (11%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           L   ++ SY   T+ F  FL    +  ++ + I        R F+     + +  R+   
Sbjct: 19  LRPASIWSYRKVTQTFTRFL----DTDMSPEDITHRDVLLWREFV--LHERGLSSRTWNN 72

Query: 91  SLSGIKSFLKYLKKRKIT--TESNILNMRNLKKSNSLPRALNEKQALTL--------VDN 140
            ++ +++   Y  K+ +    E+   +   ++    L + L E Q   +        +  
Sbjct: 73  KVTHLRALFTYGMKKGLLPQKENPFYDAV-VRPDQKLKKVLTENQIEQVYIVMARFAIME 131

Query: 141 VLLHTSHETKWIDARNS---AILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQGKGD 195
              +  H  +           +L +L   G+R ++ + L   +    DD  TLR +   +
Sbjct: 132 HRGNAPHPRRCALLPTRFWLVVLDVLRYTGMRQNQLIQLRLGDISFDDDVITLRAESAKN 191

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF--------RGIRGKPLNPGVFQRYI 247
                  + SV K  L+          +      F             + ++    + + 
Sbjct: 192 HKENRVPIISVLKPGLQQLCAELRLRGMKPHDQFFNVGFLLGKVSAEYEEMSVQTLRAFF 251

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           R+L +  G   + + H  RH+ AT ++     +L++++++LGH  ++TT  Y + N    
Sbjct: 252 RRLSKECG--FNVSPHRFRHTIATAMMKQPDSNLQTVKTLLGHSSINTTLEYVDGNVDTV 309

Query: 307 GDWMMEIY----DQTHP 319
            + +   +     + HP
Sbjct: 310 REALEARFVVRRKKNHP 326


>gi|291561890|emb|CBL40693.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4]
          Length = 284

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 55/322 (17%), Positives = 113/322 (35%), Gaps = 46/322 (14%)

Query: 1   MEGNNLP----EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE 56
           M    LP       + + L   + WL    +  G S  T++SY    R FL      + +
Sbjct: 1   MRKTALPTDRLSETARQKLSRFEAWL----LRNGKSYQTIRSYLYTARHFLSLYPEVSHD 56

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
            + +     + +                  ++   +  +  F+++        +     +
Sbjct: 57  NLMLYKCCLIDH--------------YKPSTVNLRIRAMNCFMEF-------LDLPASRV 95

Query: 117 RNLKKSNS--LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
             ++      L   +++     L   +L                 + ++   G+RISE L
Sbjct: 96  LMVRLQQKPFLENVISQADYEYLKKCLLRDGK-------LTYYFAVRIMATTGVRISELL 148

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
            +  ++++  +  + +  KGDKIR V    +V++  L +               LF    
Sbjct: 149 QIRVEDMI--RGQMDLYSKGDKIRRVYFPQNVQETCLLWLQN-----EKRTSGSLFLNRF 201

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           G P+     +  ++       L  S    H  RH FA + +    D+  +  ILGH  + 
Sbjct: 202 GNPITTNGIRDQLKFFSLRYNLDPSVVHPHAFRHLFAKNFIEKCDDIALLSDILGHESIE 261

Query: 294 TTQIYTNVNSKNGGDWMMEIYD 315
           TT+IY + +S    +   +I +
Sbjct: 262 TTRIYLHKSSTEQQNLFNQIVN 283


>gi|293372242|ref|ZP_06618627.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292632684|gb|EFF51277.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 436

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 62/308 (20%), Positives = 117/308 (37%), Gaps = 24/308 (7%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           + L   T   Y    +  L F+   Y      +  I +    E  A++   + +     +
Sbjct: 140 KNLRASTFVGYHVTKKHLLNFIRIKYHVSDYDLTAIDKAFVYEFYAYLQGYKREGETVCA 199

Query: 88  LKRSLSGIKSFLKYL---KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           +  +L  I+ F K +    + +  + + +  + N KK+      L+EK+  ++ +  L  
Sbjct: 200 VNGALKHIQRFKKVMNVALQNEWISRNPVCLL-NAKKTKVERGFLSEKELKSIEEVPL-- 256

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVP 201
                    +    +       GL   +  +LT +NI    D    L    +   I  + 
Sbjct: 257 -----PVNLSIVRDVFVFAVYTGLSFVDISNLTNENINVGIDKSLWLNYYRQKTDIHAML 311

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            L      IL+ Y+        N   P+            V  RY++++ +  G+  + T
Sbjct: 312 PLLQPAVCILKRYEAYHKGKRTNHVFPVPPN--------QVANRYLKKVAKEAGVEKNIT 363

Query: 262 AHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
            H  RH+FAT + LS+G  + ++  +LGH  + TTQIY  +      D M  + +     
Sbjct: 364 FHMARHTFATTITLSHGIPIETVSKMLGHTSIKTTQIYAKILDTKVMDDMAALKELYTRK 423

Query: 321 ITQKDKKN 328
            +QK   N
Sbjct: 424 ESQKSPDN 431


>gi|198277079|ref|ZP_03209610.1| hypothetical protein BACPLE_03287 [Bacteroides plebeius DSM 17135]
 gi|198269577|gb|EDY93847.1| hypothetical protein BACPLE_03287 [Bacteroides plebeius DSM 17135]
          Length = 418

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 51/308 (16%), Positives = 102/308 (33%), Gaps = 31/308 (10%)

Query: 11  SFELLKERQNWLQNL-EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           + +L + R N+++    ++R     +  S   + R+    L  + +    +    Q+   
Sbjct: 121 AEQLERSRSNFIEYFDHVQRTRHAHSSDSIIVNWRRVHELLKIFAKGDTIL--FSQIDLK 178

Query: 70  EIRAFISKR--------RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            + +F            +   I   +     S  K+ LK        T      ++ +++
Sbjct: 179 MVESFRQFIMNAPQGGTKRGTISQNTAATYFSIFKAGLKQAFIDGYLTIDISAKVKGIQE 238

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
             S    L  ++   L               D             G+R  +   L    +
Sbjct: 239 RESRREYLTVEELNRLAQ----------TPCDPLLKRAALFSALTGIRHCDIQKLKWSEV 288

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
                  R+     K + V  +P   +A     +    +L +   LP          +P 
Sbjct: 289 EMFNGGYRLNFTQQKTKGVEYMPISEQAYNLCGEPKEGELLVFAGLP----------DPS 338

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              R +++     G+    T H  RHS+AT  L+ G D+ ++  +LGH  + TTQ+Y  V
Sbjct: 339 WINRPVKKWIEAAGITKHITFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKV 398

Query: 302 NSKNGGDW 309
             +     
Sbjct: 399 VDEKKEKA 406


>gi|160884990|ref|ZP_02065993.1| hypothetical protein BACOVA_02986 [Bacteroides ovatus ATCC 8483]
 gi|156109340|gb|EDO11085.1| hypothetical protein BACOVA_02986 [Bacteroides ovatus ATCC 8483]
          Length = 405

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 56/322 (17%), Positives = 119/322 (36%), Gaps = 25/322 (7%)

Query: 6   LPEIVSFELLKERQ-NWLQNLE-IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           L  I  + L KER+ N+L   +      +K  ++  +    +F+ FL     +  T    
Sbjct: 103 LENITGYRLRKERKVNFLDYFQAYNDRYTKKDVRMMKGVLTRFIDFLKIEYPQYSTYIKP 162

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
            Q++   +  F+   +++  G+ +L    S  K  + Y     +  ++    +       
Sbjct: 163 EQITKDMVSLFVEYLQSRSKGEGALDYY-SKFKKVINYAVDNDVIAKNPCKGVVCKCDKQ 221

Query: 124 SLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            L +  L+ ++   L+     + + E +       A ++ LY  G+R  +   L   N+ 
Sbjct: 222 VLRKDVLSLEEMQALISTHYDNENPEIR------RAFIFCLY-TGIRFCDVQDLKYSNVD 274

Query: 183 DDQSTLRI--QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                L               ++  +   +L+       +      +             
Sbjct: 275 YSNKILSFEQNKTKGHSANSGVVIPLNDDLLQLIGEPHTEQYEQETIFRLPSATMCL--- 331

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               + +R+  +  G+    T H  RHSFA ++L+NG +++++ S+LGH  L  T+ YT 
Sbjct: 332 ----KALRRWTKRAGITKHITWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTR 387

Query: 301 VNSKNGGDWMMEIYDQTHPSIT 322
                  D + E    + P + 
Sbjct: 388 -----AVDSLKEAAINSLPKLK 404


>gi|26553744|ref|NP_757678.1| recombinase [Mycoplasma penetrans HF-2]
 gi|26453751|dbj|BAC44082.1| recombinase [Mycoplasma penetrans HF-2]
          Length = 253

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 55/290 (18%), Positives = 113/290 (38%), Gaps = 49/290 (16%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E LK+ + WL N+   +G S  T++ Y     ++  FL    E                 
Sbjct: 2   EKLKKFKEWLINI---KGYSPKTIEVYC----KYAHFLIENDEN---------------- 38

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            FI+  + +   + S +  LS  K + ++   ++         +   KK   +   +   
Sbjct: 39  YFITMEKYKHTTNNSKRIILSSFKKYYEFTDDKRR------EEIELPKKEKRVQDYVTYD 92

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + + ++D +  H S         + AI+ LL+  G+R +E L++   +I  ++  +RI G
Sbjct: 93  EYIKIIDFIKNHKSSN------MSLAIIRLLFETGIRSAELLNIKTSDIYKNR--IRIYG 144

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K    R + +  S+ K + +       +    +           P+      + +R L +
Sbjct: 145 KNRLERFIYVCDSLEKILNQLVKKRNKENVDKVF----------PITYKALYKRVRNLSK 194

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +      + H  R  FATH +     +  I  ++GH  ++TT+ Y   +
Sbjct: 195 KVN--KKLSPHMFRRGFATHCIGKNIGIYQISLMMGHENINTTKNYIKCS 242


>gi|288919364|ref|ZP_06413698.1| integrase family protein [Frankia sp. EUN1f]
 gi|288349253|gb|EFC83496.1| integrase family protein [Frankia sp. EUN1f]
          Length = 411

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 60/355 (16%), Positives = 117/355 (32%), Gaps = 79/355 (22%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +L +    RG +  +++SY     ++  FL     E        + +  E+R F+  
Sbjct: 44  IKRFLHDFAA-RGYTAGSVRSYCYALLRWRRFLDVVGVE------WDRATSAEVRDFVLW 96

Query: 78  RR---------------------------TQKIGDRSLKRSLSGIKSFLKYLKKRKIT-- 108
                                              R+++ S + +++F  +  +R     
Sbjct: 97  LAHASKRVRRTKSATTAGTINPVTRKAYLDDSYQPRTIRHSNAVLRTFYGFWIERGHAPL 156

Query: 109 ----------------TESNILNMR-------NLKKSNSLPRALNEKQALTLVDNVLLHT 145
                             +     R       N K     PRA+ +++   L   +  + 
Sbjct: 157 VNPVPLSRQTGRRPHAHHNPREPFRTEGRLRYNPKIPRRPPRAMPDERWNDLFGAMRSN- 215

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG-DKIRIVPLLP 204
                    R+ A+L L      R S+ L L   ++      +R++ KG    + +P  P
Sbjct: 216 ---------RDRALLALAVSTAARASDLLGLRCTDLDWGDQLIRVRRKGTGAEQWLPASP 266

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIR------GKPLNPGVFQRYIRQLRRYLGLPL 258
                +  Y           +     R          +P      +  +R++   LG   
Sbjct: 267 EAFVWLRLYLADIGRLPTDAVLWWTLRRRCDDGVPARRPFTYDALRAVLRRVNEQLG--S 324

Query: 259 STTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           + T H LRH+ A  ++ +    LR +Q+ILGH  L+TTQIY   +       + +
Sbjct: 325 NWTMHDLRHTCAIRMVRDEALSLRDVQTILGHVHLTTTQIYVEDDDAEVFRRVRQ 379


>gi|302388220|ref|YP_003824042.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302198848|gb|ADL06419.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 368

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 64/322 (19%), Positives = 131/322 (40%), Gaps = 41/322 (12%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ++    ++WL++  +   +   T +SY     +++I      + +       +L+   + 
Sbjct: 62  DVCSLFESWLEDASL--RVKPSTYESYYRCMDKYVIPFFKQDKSQ-------KLTEESVL 112

Query: 73  AFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
            F+   R Q  + D S K++L+  K  LK + K      S I  ++  K  +      + 
Sbjct: 113 CFVKAMREQPGLADSSRKKNLTIFKIALKEILKGTPEGFSIIEQVKIPKPDDKEVMVFSL 172

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           K+   L++   LH+  +        +A + L +  G+R+ E  SL   +I  +  TL I 
Sbjct: 173 KE-QRLIEQTALHSKDKR-------AAGIILCFYTGIRLGELCSLKWGDIDMEAGTLSIG 224

Query: 192 GKGDKI-------------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
               +I                   R       + + +L+ +  C F  + N    +F  
Sbjct: 225 RTVSRIKDFEEGKSKTALLVGAPKSRKSLRKIPLPEFLLKLFKECGFS-HANPDHYIF-S 282

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
               P++P  FQ+  ++L +   +      H +RH+FAT  L  G D+++I  +LGH  +
Sbjct: 283 QGDSPIDPRCFQKLYKKLLKEAHVQDR-KFHAIRHTFATRALEMGVDVKTISELLGHSSV 341

Query: 293 STT-QIYTNVNSKNGGDWMMEI 313
           S T  +Y++   +     +  +
Sbjct: 342 SITLNVYSHSLMEQKKLPLKNL 363


>gi|152988581|ref|YP_001350694.1| integrase [Pseudomonas aeruginosa PA7]
 gi|150963739|gb|ABR85764.1| integrase [Pseudomonas aeruginosa PA7]
          Length = 332

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 51/239 (21%), Positives = 92/239 (38%), Gaps = 32/239 (13%)

Query: 77  KRRTQKIGDRSLK---RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +RR   +   ++    R LS +  F + ++      E+ +  +R +K        L+  Q
Sbjct: 107 QRRLTGVKPETVNHEQRYLSAV--FSELIRLGSWHKENPLGKVRQIKTDQVELTFLSLDQ 164

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++     T++ T  +         L    G R  EA SLT   +   +     + K
Sbjct: 165 VARLLEECKASTNNHTYPVA-------LLCLATGARWEEAESLTRGAVHGGKVHYH-RTK 216

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
             + R VP+   + + I        F + +     LF   R             R   + 
Sbjct: 217 NRQSRSVPIPDELERLI--------FKVGMPGSGRLFMSCR----------AAFRCAYQR 258

Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            G        H LRH+FA+H +  GGD+ ++Q ILGH  ++ T  Y +++ ++    M 
Sbjct: 259 CGFQTPGQMTHILRHTFASHYMMGGGDILALQRILGHSSITMTMRYAHLSPEHLESAMR 317


>gi|307149750|ref|YP_003890793.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306986550|gb|ADN18428.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 192

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 73/178 (41%), Gaps = 11/178 (6%)

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L   +   L++        +  W   RN+ ++ +LY  GLR +EA  +   ++   + T+
Sbjct: 19  LTPNEVSQLIE----AVKKKGGWYAYRNATLILMLYRHGLRRTEAAHIRWSDVDLAEGTI 74

Query: 189 RIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
            I+  KG +    P+     +A+ +         +      +F G R  PL        +
Sbjct: 75  YIRRVKGSRSGRHPIGGDEMRALKK------LRRDYAPSPFVFTGNRRTPLTERTISHIV 128

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            Q     G   +  AH LRH+   +L + G D R IQ  LGH  +  T  YT ++S  
Sbjct: 129 HQAGILAGFEFTVHAHLLRHACGYYLANKGVDTRIIQDYLGHANIQNTVRYTQLSSAR 186


>gi|291560453|emb|CBL39253.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2]
          Length = 264

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 60/256 (23%), Positives = 102/256 (39%), Gaps = 18/256 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +LQ L  +R +S  T+ SY+   R +L +L        T  +I       ++ F      
Sbjct: 16  FLQRLMQQRKVSYHTVCSYKDAFRLYLRYLEDVHGISATKVSINHFDLEYLQCFCKYLEE 75

Query: 81  -QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +K    ++   ++ IKSF++Y+ +     E + ++ R L         L     +T   
Sbjct: 76  KRKNKPVTINNRMAAIKSFMQYVAET--APEYSAISKRALMLPAQ-KHELPVMSFITKEF 132

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----DQSTLRIQGKGD 195
           N L+       +I AR+  +L L+Y  G+R+SE L +   +I      + +++ I GKG 
Sbjct: 133 NALIQVCDTNTFIGARDKLMLLLMYNTGVRVSELLEIKVSDIHGADSVNHASVIIHGKGR 192

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R VPL  +  K I +Y      +        LF    G  L     +  I +L     
Sbjct: 193 KQREVPLWKTTVKYINKYLKTYTAE----CTDYLFINKNGDELTRSGVRTRINKLVSQAT 248

Query: 256 L------PLSTTAHTL 265
                    + T HT 
Sbjct: 249 AQVPSLREKTVTLHTF 264


>gi|120553132|ref|YP_957483.1| phage integrase family protein [Marinobacter aquaeolei VT8]
 gi|120322981|gb|ABM17296.1| phage integrase family protein [Marinobacter aquaeolei VT8]
          Length = 372

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 59/310 (19%), Positives = 119/310 (38%), Gaps = 44/310 (14%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR------RTQKIG 84
           L+  ++++    TR+FL ++     E      +  L      +++           Q + 
Sbjct: 48  LAPKSVETLAEHTREFLSWVFGTGLE------LSDLDEDYFESYVEALCHYKKSNGQSLA 101

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTE----------SNILNMRNLKKSNSLP-----RAL 129
             ++   ++G   FL +   +                +   +   +   S P     + L
Sbjct: 102 WNTVNARVTGACQFLTWCISKGYCPHLTRDEASLIKDSAKALYKARSYVSKPIQRPVKFL 161

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           NE +AL  V  +   +      +  RN  +  ++   GLR+SE      +++ + +S   
Sbjct: 162 NEDEALKFVSALGKISGRNNAHVRHRNILVGQMMLQTGLRVSEVCDFPLRDLPEVESNFL 221

Query: 190 IQ------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN--------IQLPLFRGIRG 235
           +       GKG K R++ +   +   + EY D+    +           +   LF   +G
Sbjct: 222 LTPARCAFGKGAKSRMILIPNELLLRLWEYVDIDRERITERFSGIAEEIVSPKLFVSEKG 281

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            PL+    ++  R+  +Y G+  +   HTLRH+F T+      DL ++  +LGH    TT
Sbjct: 282 TPLSVNWVEKLFRKASKYTGI--NAHPHTLRHTFGTYHYLYNRDLITLSKLLGHSDSETT 339

Query: 296 QI-YTNVNSK 304
           +  Y  +  K
Sbjct: 340 KRFYVGLAGK 349


>gi|261368414|ref|ZP_05981297.1| putative integrase [Subdoligranulum variabile DSM 15176]
 gi|282569555|gb|EFB75090.1| putative integrase [Subdoligranulum variabile DSM 15176]
          Length = 248

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 90/253 (35%), Gaps = 27/253 (10%)

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
               +  +      +     S+   L+ +  + +          +     + LK  + + 
Sbjct: 15  DKQTVADWRDSLVKRGYSASSVNAMLAAVNGYQECCG-------NPQGKAKPLKCQHRVF 67

Query: 127 ----RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
               R L+  +   L+          T         +L  L   G+R+SE   +T + + 
Sbjct: 68  SDAGRELSRAEYFRLLQAARETGRKRT-------LLVLQTLCATGIRVSELAYITAEAVH 120

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
             ++++R +GK    R + L   + K +  +              P+F    G+PL+   
Sbjct: 121 RRRASIRCKGKC---RDILLPAQLCKRLERWCARRHIHAG-----PVFVTRTGRPLDRVT 172

Query: 243 FQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             + ++ L +  G+       H LRH FA        +L  +  +LGH  + TT+IY   
Sbjct: 173 VWKEMKALCKRAGVAREKVFPHNLRHLFARTFYHIEKNLSKLADLLGHSSIETTRIYIME 232

Query: 302 NSKNGGDWMMEIY 314
           +       + +++
Sbjct: 233 SGAEHQRLLEQMH 245


>gi|134278599|ref|ZP_01765313.1| site-specific recombinase, phage integrase family protein
           [Burkholderia pseudomallei 305]
 gi|134250383|gb|EBA50463.1| site-specific recombinase, phage integrase family protein
           [Burkholderia pseudomallei 305]
          Length = 561

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 66/325 (20%), Positives = 122/325 (37%), Gaps = 33/325 (10%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           KE +  +    +ERG +  +L +   D   +  FL   T  +  +   R   + E R F 
Sbjct: 241 KEAERLILWAIVERGCALSSLTT--DDAIAYRSFLRRPTPRERWVGPSRPRHHIEWRPF- 297

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS----LPRALNE 131
               T  +  RS   +L+ + +  ++L +++    +    ++           + R   E
Sbjct: 298 ----TGPLSARSAAYALNVLSALFRWLVEQRYVLANPFAGVKIKSHVQRAGLDMSRGFTE 353

Query: 132 KQALTL--VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--- 186
            + L +  + + L  +   +     R   +L   Y  GLR SE +S T  +I  D+    
Sbjct: 354 GEWLLIRTLADGLEWSYGWSAPAAQRLRFVLDFGYATGLRASELVSATLGDIRRDEHGDH 413

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKP--LNPG 241
            L + GKG K+  V L    R A+ +Y       +     N   PL   +      +   
Sbjct: 414 WLHVLGKGGKLGKVALPSLARTALDQYLVQRGLPVTPARWNPATPLVVSLDEDGAGIEST 473

Query: 242 VFQRYIRQLR------------RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
              R +R+                       + H LRHS A+H L+ G +L +++  L H
Sbjct: 474 RLWRVLRRFFVLVADVLPSERPATAEKLRRASPHWLRHSHASHALARGAELITVRDNLRH 533

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIY 314
             +STT  Y + +       + + +
Sbjct: 534 ASISTTSTYLHGDEAKRARQLSQAF 558


>gi|157371111|ref|YP_001479100.1| integrase family protein [Serratia proteamaculans 568]
 gi|157322875|gb|ABV41972.1| integrase family protein [Serratia proteamaculans 568]
          Length = 198

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 73/187 (39%), Gaps = 7/187 (3%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L   +   L+       + E       +S ++++ +  G R+SE   L   ++  +  
Sbjct: 9   KHLTRTEVTRLLQQAAAGRAPER------DSCLIWMGFIHGCRVSELNGLRMADLDMESG 62

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            + +   K     I PL  + +  +  + +      NL  +  LF   +G  L+     R
Sbjct: 63  CVYMNRLKNGLSTIHPLETTEKNLLTRWLEKRRSCRNLEDEEWLFLSQKGYRLSRQRIYR 122

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            ++   +  GL +    H LRH+    L  NG D R IQ  LGH  +  T +YT  N+  
Sbjct: 123 MLQAYGKQAGLDVDAHPHMLRHACGYALADNGADTRVIQDYLGHRNIQHTVLYTAANAGR 182

Query: 306 GGDWMME 312
                 E
Sbjct: 183 FKHLWKE 189


>gi|150019809|ref|YP_001312063.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149906274|gb|ABR37107.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 323

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 56/295 (18%), Positives = 128/295 (43%), Gaps = 21/295 (7%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI-QTIRQLSYTEIRAFISKR 78
            ++   +  RG  + T++S E        F  +   + I++ + I +++ + +   ++  
Sbjct: 25  EYMNYCKY-RGQREGTIKSKE-------GFYKYVLPKMISVDEDITKITESMVLIHVNSM 76

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   +    +  +K+FL Y  KRK   E  +  + N+           E +   L+
Sbjct: 77  IDRGLKGGTYSTFVVKLKAFLTYCFKRKYLQEFEV-KIPNVVLEKK--AVYTEDEINILL 133

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197
               L+T       D R+  ++    G G R    L++  ++I  ++ ++     K  + 
Sbjct: 134 TKPNLNTCVIG---DYRSYVMIAFFVGTGCRSETILNVRVKDINFEKDSILFSHMKTKRQ 190

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
             VP+   +R  +LEY +    ++NL     LF  I G  ++     +  +   ++  + 
Sbjct: 191 ATVPMSKFLRGELLEYIN----NMNLKHNDLLFPKIDGTQMSYDTMHQNFKNYFKHCNIK 246

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           +    +T R++FAT  + NGGD+  ++ +L H  + TT+ Y N+   +  + +++
Sbjct: 247 MHGV-NTFRNTFATMFIKNGGDIYRLKLLLNHSTIKTTERYINLLPLDFKEDLLK 300


>gi|194429499|ref|ZP_03062021.1| integrase [Escherichia coli B171]
 gi|194412463|gb|EDX28763.1| integrase [Escherichia coli B171]
 gi|195182858|dbj|BAG66428.1| predicted integrase [Escherichia coli O111:H-]
          Length = 312

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 103/257 (40%), Gaps = 29/257 (11%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNIL 114
           E +    + +L+ T +      R  Q I   ++ R +  + +    L        ++ + 
Sbjct: 77  EAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAMFTALISSGHFLNDNPVQ 136

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            ++ +K +      L++ + + L+D  L     E           + +L   G R  E  
Sbjct: 137 GLKGMKVNEREMGYLSKSECVQLLDA-LAENPDE--------RLAVEILLSTGARWGEVA 187

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +L  + ++  + T   + K  K R VP+  S+ + I                  +F    
Sbjct: 188 ALEQRRVLHCRITFS-KTKNSKNRTVPISESLFEKI-----------KKRGGKLVFPT-- 233

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              L+  + +  I+ +     +P     H LRH+FA+H + NGG++ ++Q ILGH ++ T
Sbjct: 234 ---LDYSLVRDVIKTVA--PDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQT 288

Query: 295 TQIYTNVNSKNGGDWMM 311
           T IY ++      D + 
Sbjct: 289 TMIYAHLAPDYLQDAVR 305


>gi|228962663|ref|ZP_04123966.1| Integrase-recombinase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228797022|gb|EEM44329.1| Integrase-recombinase [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 391

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 67/313 (21%), Positives = 122/313 (38%), Gaps = 34/313 (10%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-KITIQTIRQ-------LSYTEIRAF 74
           ++++ ++     T +SY  +   F   +  + EE ++  + I++       L    IR +
Sbjct: 75  KDMDEKKNRKAATKKSYISEILSFCQCMVLHAEEFELDGEEIQEKDSLLKTLQPWHIRKY 134

Query: 75  ISKRRT-------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--NLKKSNSL 125
            S  +              +L +    I+SFLK+L             ++  N+ + +  
Sbjct: 135 NSWLKQVENGRNGDTYAVATLAKKTVLIRSFLKHLHAFAYIERPLHEELQRANVNEQDRP 194

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDD 184
            R L+  + + ++           +     N  IL  L   G RI E  +   ++   D 
Sbjct: 195 NRDLSYDEVMKILGFY-------KEQRHLVNYTILLALASTGARIQELCTTRVKDLHYDG 247

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGV 242
           +  L+++GKGDK+R + +   + + I E      F   L+     PL    RG   N   
Sbjct: 248 KYWLKVKGKGDKVRELFISEHLYQCICEMRRKRGFQTVLDRGDASPLLVNQRGNFYNSKT 307

Query: 243 FQRYIRQLRRYLGLPL------STTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTT 295
               +  + +   L        S TAHT RH+FA   +  G  DL  +   LGH  + TT
Sbjct: 308 LSNQVTDMIKKTNLEFLQYRENSVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTT 367

Query: 296 QIYTNVNSKNGGD 308
           +IY   + K   +
Sbjct: 368 KIYLEKHMKRKNN 380


>gi|229079526|ref|ZP_04212065.1| Integrase-recombinase [Bacillus cereus Rock4-2]
 gi|228703805|gb|EEL56252.1| Integrase-recombinase [Bacillus cereus Rock4-2]
          Length = 390

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 63/313 (20%), Positives = 117/313 (37%), Gaps = 34/313 (10%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE--------KITIQTIRQLSYTEIRAF 74
           ++++ ++   + T +SY  +   F   +  + EE        +     ++ L    IR +
Sbjct: 75  KDMDEKKNRKEDTKKSYVSEILSFCQCMVQHAEEFELNGEEVQQNDSLLKTLQPWHIRKY 134

Query: 75  ISKRRT-------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--NLKKSNSL 125
               +              +L +    ++SFLK+L             ++  N+ + +  
Sbjct: 135 NVWLKQVENGRNGDMYAIATLAKKSVLLRSFLKHLHVFAYIERPLHEELQRANVNEQDRP 194

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDD 184
            R L+  + + ++           +     N  IL  L   G RI E  +   ++   D 
Sbjct: 195 NRDLSYDEVMKILGFY-------KERGHLVNYTILLALASTGARIQELCTARVKDLHYDG 247

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGV 242
           +  L++ GKGDK+R + +   + + I E          L    + PLF   RG   N   
Sbjct: 248 KYWLKVTGKGDKVRELFISEHLYQCICEMRRRRGLQTVLEKGDESPLFINQRGSAYNSKT 307

Query: 243 FQRYIRQLRRYLGLPL------STTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTT 295
               +  + +   L          TAHT RH+FA   +  G  DL  +   LGH  + TT
Sbjct: 308 LSNQVTDMIKKTNLKFLLYRENPVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTT 367

Query: 296 QIYTNVNSKNGGD 308
           +IY   + K   +
Sbjct: 368 KIYLEKHMKRENN 380


>gi|198282467|ref|YP_002218788.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198282806|ref|YP_002219127.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198284131|ref|YP_002220452.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218665325|ref|YP_002426785.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218666072|ref|YP_002425002.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218667691|ref|YP_002425322.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198246988|gb|ACH82581.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198247327|gb|ACH82920.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198248652|gb|ACH84245.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218517538|gb|ACK78124.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218518285|gb|ACK78871.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218519904|gb|ACK80490.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 313

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 59/228 (25%), Positives = 92/228 (40%), Gaps = 18/228 (7%)

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSL--PRALNEKQALTLVDNVLLHTSHETKWIDARN 156
            ++   R + T   +      K+   +  P   +  +   L+D +    +  ++  D   
Sbjct: 73  YRFALARGMVTAIPLPR-SVPKQDGPIFVPYIYSHAELKRLIDVLPALCAGRSRIDDYVF 131

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD 215
            A+L L+YG GLRISEALSL   ++   Q+ L ++  K  K RIVPL   + + + EY  
Sbjct: 132 KALLLLMYGAGLRISEALSLHIHDVDLQQTILYVRETKFYKTRIVPLGKDLTQILNEYIA 191

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA------HTLRHSF 269
                 +     P F    G PL+        R++R    +            H LRHS 
Sbjct: 192 KRNNRYSAATDAPFFCFRDGTPLSRSAAHGLFRRVRAKADVLKEGGPRHQPRLHDLRHSA 251

Query: 270 ATH----LLSNGGDLR----SIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           A H        G DLR     + + LGH  LS TQ Y  +  +   + 
Sbjct: 252 AVHRLIAWYRCGADLRDLLPKLATYLGHVDLSATQRYLTMTPELLHEA 299


>gi|314948558|ref|ZP_07851938.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0082]
 gi|313645055|gb|EFS09635.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0082]
          Length = 382

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 57/337 (16%), Positives = 114/337 (33%), Gaps = 40/337 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKI 58
           ++   +P   +    +  + WL++        K T++  SY        I    +   K 
Sbjct: 56  LQKTGMPTSTNTTFKEAAELWLESY-------KKTVKESSYSRT----KIIFNKHIYPKF 104

Query: 59  TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
               + +++    +  ++    +    +     ++ +    KY     +T+++  LN+  
Sbjct: 105 GNIKLSKINTAYCQKVVNDWSEKG-SSKQYPLFVNYMNKVFKYAINIGLTSDNPTLNLII 163

Query: 119 LKKSNSLPRAL---NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
            K      + L    ++Q    ++ V   +  +  +   R+  +  LL   G RI E L+
Sbjct: 164 PKPQIKTDKKLKLYTKEQLELFLNEV---SQEQNPYFKNRDYTLFRLLAFSGCRIGEILA 220

Query: 176 LTPQNIMDDQSTLRIQGK---------------GDKIRIVPLLPSVRKAILEY---YDLC 217
           LT  NI    + + I+                     RI+ L     K +  +       
Sbjct: 221 LTWDNINFKTNEMAIKKTVARSDKYYISETPKTKKSNRIIYLDEKTIKQLKFWKLEQRKY 280

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            F L       LF                    R   GLP     H  RH+ A+ L   G
Sbjct: 281 LFQLGFTKANYLFTNDENNFTINQSVAERYNIYRERAGLPY-IGLHGFRHTHASMLYEAG 339

Query: 278 GDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
            D + +Q  +GH  + TT   YT++ +    +   ++
Sbjct: 340 ADHKEVQERMGHANIKTTMDTYTHITNSKKEETTQKL 376


>gi|86140615|ref|ZP_01059174.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
 gi|85832557|gb|EAQ51006.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
          Length = 422

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 55/292 (18%), Positives = 121/292 (41%), Gaps = 25/292 (8%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK----IGDR 86
           L+K T+++++      L FL     E I +  +      +  +F+ +   +     +   
Sbjct: 125 LAKGTIRNFQITENYVLKFLKSNKLEDIFLSRLDYKFICDFESFLVQYYPKGHPRAMSHN 184

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++ + +  ++  ++     +   +      +      +    L+E +      + L    
Sbjct: 185 TVMKHIQRLRKMIRLAYHLEWLDKDPFRRWKT-TFEKTDREFLSEHEL-----SNLATYE 238

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----MDDQSTLRIQGKGDKIRIVPL 202
              + ++      L+  Y  G+  ++   LTP NI     D +  +  + K +    VPL
Sbjct: 239 FPLERLERVRDLFLFSCY-TGISYADLNKLTPNNIWKGEDDKKWIVTNRQKTNTRVKVPL 297

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           +P+  + I +Y +    +++         G    P+       Y++++    GL  + T 
Sbjct: 298 MPTALRLIEKYREHPLTEVS---------GTLFPPITNERANLYLKEIAEACGLTKNLTF 348

Query: 263 HTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           H  RH+FAT + LSNG  + ++  +LGH +++TTQIY  V  K   + M ++
Sbjct: 349 HMARHTFATTVTLSNGMPIETVSKLLGHTKIATTQIYARVLDKKVEEDMNKL 400


>gi|307628206|gb|ADN72510.1| putative phage integrase [Escherichia coli UM146]
          Length = 187

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 45/174 (25%), Positives = 69/174 (39%), Gaps = 7/174 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L + +   L+D      + ++     RN  ++ + +  G R SE L L   +I     
Sbjct: 4   KYLTQDEVYRLMD------AAQSMSFPERNRCLIMMAFIHGFRASELLYLRLSDIDASGK 57

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            L I+  K       PLLP     I  +        N      LF   + +P++   F  
Sbjct: 58  QLNIRRIKNGFSTTHPLLPDEYNLIKLWLKQRKLIENGVEGDWLFLSRKRRPISRQHFFS 117

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            IR+  +  GL +    H LRH+    L  NG D R +Q  LGH  +  T  YT
Sbjct: 118 IIREAGKRAGLAVKAHPHMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYT 171


>gi|323965422|gb|EGB60877.1| phage integrase [Escherichia coli M863]
 gi|327250221|gb|EGE61940.1| phage integrase family protein [Escherichia coli STEC_7v]
          Length = 198

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 70/174 (40%), Gaps = 7/174 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R L  K+   ++  V    +       AR+  ++ L Y  G+RISE L L  Q++  ++ 
Sbjct: 5   RYLTGKEVQDMMQAVCYGAT------GARDYCLILLAYRHGMRISELLDLHYQDLDLNEG 58

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            + I+  K     + PL    R+A+  +          +    +F   RG  L+     R
Sbjct: 59  RINIRRLKNGFSTVHPLRFDEREAVERWTQERTNWKGADQTDAIFISRRGSRLSRQQAYR 118

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            IR      G    T  H LRH+    L   G D R IQ  LGH  +  T  YT
Sbjct: 119 IIRDAGIEAGTVTQTHPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYT 172


>gi|317013308|gb|ADU83916.1| integrase/recombinase (xerD) [Helicobacter pylori Lithuania75]
          Length = 355

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 123/283 (43%), Gaps = 16/283 (5%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           K T+        Q L     Y ++ + +++ R LS  ++  F+ +   Q     S+ + +
Sbjct: 69  KHTI------MMQGLFLFFNYFKDNLKLRSFRMLSEEQVINFLFEL-AQNRKPSSMAKYV 121

Query: 93  SGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
             ++ F  Y  +KR+ + +  + N+   K   SLPR LN+K   + +  +L +    +  
Sbjct: 122 MYLRQFFDYLDRKRRYSFDFTLKNLAFAKTKESLPRHLNDKDLKSFLKTLLDYKPATS-- 179

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKA 209
            + RN  IL ++   GLR  E L++  ++I  ++   ++ IQGKG K R   +  S+ + 
Sbjct: 180 FEKRNKCILLIVILGGLRKYEVLNIELKHIQVEEQNYSILIQGKGRKERKAYIKKSLLEP 239

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL----STTAHTL 265
            L  +    + L       LF+  + K  N      +I  + +   +       T  H  
Sbjct: 240 SLNAWLSDEYRLKYFNGAYLFKKDKQKAQNSLTLYNFIPLIFKLAQIKHYKQYGTGLHLF 299

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           RHSFAT +     DL      LGH  L +T+IY +   ++   
Sbjct: 300 RHSFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHNKK 342


>gi|160937784|ref|ZP_02085143.1| hypothetical protein CLOBOL_02676 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439223|gb|EDP16976.1| hypothetical protein CLOBOL_02676 [Clostridium bolteae ATCC
           BAA-613]
          Length = 278

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 69/303 (22%), Positives = 123/303 (40%), Gaps = 35/303 (11%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E+L+E + +L     E   S  T+Q Y  +   FL FL      K  +   R+       
Sbjct: 7   EILREYRIYL----TEHEKSHATIQKYVRELVWFLSFLQGEEPTKAKVLEYRE------- 55

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
                +  Q    R++   LS I S+L YL             +R LK  +++   +++ 
Sbjct: 56  -----QLQQSHQARTVNAKLSAIHSYLDYLGL-------AACKVRFLKIQHTV--FVDDS 101

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + LT  +   L  + + K        +L +    G+R+SE   LT + +   ++ +R++G
Sbjct: 102 RDLTEAEYHRLLDAAKRKKDSRLYHVMLAIC-TTGIRVSELSFLTVEALHKGKAEIRMKG 160

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K   IR + L   + + +  Y               LF    GKPL+       +++L R
Sbjct: 161 K---IRTILLTKELCRKLNAYAKEKGIRTG-----YLFCTRTGKPLDRSNICHDMKKLCR 212

Query: 253 YLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              + P     H LRH FA    +   +L  +  ILGH  + TT+IY  + ++     + 
Sbjct: 213 AARVNPEKVFPHNLRHLFAKCYYAIKKNLAYLADILGHASVDTTRIYVAMGTREHERTLQ 272

Query: 312 EIY 314
            ++
Sbjct: 273 RMH 275


>gi|302531894|ref|ZP_07284236.1| hypothetical protein SSMG_08276 [Streptomyces sp. AA4]
 gi|302440789|gb|EFL12605.1| hypothetical protein SSMG_08276 [Streptomyces sp. AA4]
          Length = 498

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 56/286 (19%), Positives = 103/286 (36%), Gaps = 23/286 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  T ++Y      +L F      + +  +T       ++  +  +   +      + + 
Sbjct: 100 SPATGEAYCRALVSWLDFCQAGGLDPLGARTP------DVDTWTGRLAGRGASASVINQR 153

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLK---KSNSLPRALNEKQALTLVDNVLLHTSHE 148
           L+G++ + +YL+     T   + +           S    L   Q   L+          
Sbjct: 154 LAGVRGWYRYLRLGGTATADPVSDADRPSAAAVDESETPYLTIAQTGALLRQARWEVDDA 213

Query: 149 TKWID-----ARNSAILYLLYGCGLRISEALSLTPQ--NIMDDQSTLRIQGKGDK-IRIV 200
                      R +A+++LL   G+R   AL+   +  +    +  LR + KG +     
Sbjct: 214 GDDPAKLELVLRVAALVWLLPVTGVRSGGALAARVRGLHYNGGRRRLRYRLKGYEGEVSD 273

Query: 201 PLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
            L P V  A+  Y D       L       PLF    G+  +     + +R L    G+P
Sbjct: 274 ALPPQVALALDAYLDCRAARQGLPALTPDAPLFATGSGRRWDKQGATKALRGLAGRAGIP 333

Query: 258 --LSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIYTN 300
                  H LRHS  +   +  G  L  ++ +L H  ++TTQIY +
Sbjct: 334 HADKLNLHALRHSAGSSAHNELGIPLDKVRRLLRHRSIATTQIYVH 379


>gi|315608474|ref|ZP_07883461.1| integrase [Prevotella buccae ATCC 33574]
 gi|315249800|gb|EFU29802.1| integrase [Prevotella buccae ATCC 33574]
          Length = 438

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 63/286 (22%), Positives = 109/286 (38%), Gaps = 24/286 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSLKR 90
           S  TLQ Y    + F  FL      K     + +L++T I  F    RT       +  +
Sbjct: 160 SVATLQKYNVCKKHFAAFLNEKY--KRCDIRLSELTFTVIHDFDIYLRTTAGQNPNTATK 217

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           ++   K+     +K  +      +N  +          L +++ + +      +      
Sbjct: 218 TMKTFKTITILGRKMGVLNHDPFIN-HHFHLEPVNRGFLTDEEIMKI-----ANKDFGIN 271

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVR 207
            ++      ++  +  GL   +  +LTP NI    D Q  +  + K      V LL   +
Sbjct: 272 RLELVRDVFIFSCF-TGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPK 330

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + I +Y      D  L   LP+        L       Y++++    G+    T H  RH
Sbjct: 331 RIITKYGHKTYRDGKL---LPV--------LTNQKINAYLKEIADLCGIKKRLTFHLARH 379

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +FAT  LS G  + S+  +LGH  + TTQIY  + +K     M E+
Sbjct: 380 TFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEEL 425


>gi|38637713|ref|NP_942687.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527051|gb|AAP85801.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 415

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 61/287 (21%), Positives = 117/287 (40%), Gaps = 20/287 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            + Q +  +RG S  TL ++    R                  + +L+  ++R FI ++ 
Sbjct: 128 AFCQWMRQQRGTSDATLYNHGIALRDLFR----------RGDDLGKLNAMDLRQFILEQS 177

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTL 137
            +K G  + K   + ++  +++L             + +      ++LPR L   +   +
Sbjct: 178 MKK-GWAAAKHCTTALRMLVRFLIAEGKCAAGLEAAIPVLAHWSLSTLPRYLQLDEVERV 236

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           + +    +      +  R+ AIL LL   GLR  +   L   +I    +++ + GK  + 
Sbjct: 237 IASCDTASP-----VGQRDRAILLLLARLGLRAGDIWHLRIGDIDWKDASISVSGKNGRQ 291

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL- 256
            ++PL   V +AI++Y        + +              N       +++  R  G+ 
Sbjct: 292 TLLPLTQEVGQAIVDYLRQGRPRTDTDTVFVRACAPFQAFANHAAISIIVKKAMRRAGVV 351

Query: 257 -PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                 AH LRHS AT +L  G  L+ I ++L H  ++TTQIY  V+
Sbjct: 352 CSSRGAAHVLRHSVATSMLGQGASLQDIAAVLRHQSVATTQIYAKVD 398


>gi|16132134|ref|NP_418733.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli str. K-12 substr. MG1655]
 gi|24115412|ref|NP_709922.1| tyrosine recombinase [Shigella flexneri 2a str. 301]
 gi|26251200|ref|NP_757240.1| tyrosine recombinase [Escherichia coli CFT073]
 gi|30065432|ref|NP_839603.1| tyrosine recombinase [Shigella flexneri 2a str. 2457T]
 gi|89111025|ref|AP_004805.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli str. K-12 substr. W3110]
 gi|157163757|ref|YP_001461075.1| tyrosine recombinase [Escherichia coli HS]
 gi|170682577|ref|YP_001746750.1| tyrosine recombinase [Escherichia coli SMS-3-5]
 gi|191167181|ref|ZP_03029001.1| type 1 fimbriae regulatory protein FimE [Escherichia coli B7A]
 gi|193063696|ref|ZP_03044784.1| type 1 fimbriae regulatory protein FimE [Escherichia coli E22]
 gi|193070101|ref|ZP_03051047.1| type 1 fimbriae regulatory protein FimE [Escherichia coli E110019]
 gi|194426551|ref|ZP_03059105.1| type 1 fimbriae regulatory protein FimE [Escherichia coli B171]
 gi|209921777|ref|YP_002295861.1| tyrosine recombinase [Escherichia coli SE11]
 gi|218556844|ref|YP_002389758.1| tyrosine recombinase [Escherichia coli IAI1]
 gi|218561489|ref|YP_002394402.1| tyrosine recombinase [Escherichia coli S88]
 gi|218703011|ref|YP_002410640.1| tyrosine recombinase [Escherichia coli IAI39]
 gi|218707980|ref|YP_002415499.1| tyrosine recombinase [Escherichia coli UMN026]
 gi|237704054|ref|ZP_04534535.1| tyrosine recombinase [Escherichia sp. 3_2_53FAA]
 gi|253775069|ref|YP_003037900.1| tyrosine recombinase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254164234|ref|YP_003047344.1| tyrosine recombinase [Escherichia coli B str. REL606]
 gi|256019941|ref|ZP_05433806.1| tyrosine recombinase [Shigella sp. D9]
 gi|256025242|ref|ZP_05439107.1| tyrosine recombinase [Escherichia sp. 4_1_40B]
 gi|260847129|ref|YP_003224907.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O103:H2 str. 12009]
 gi|260858481|ref|YP_003232372.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O26:H11 str. 11368]
 gi|260871033|ref|YP_003237435.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O111:H- str. 11128]
 gi|293402970|ref|ZP_06647067.1| tyrosine recombinase [Escherichia coli FVEC1412]
 gi|293407997|ref|ZP_06651837.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293417777|ref|ZP_06660399.1| type 1 fimbriae regulatory protein fimE [Escherichia coli B185]
 gi|293476576|ref|ZP_06664984.1| type 1 fimbriae regulatory protein fimE [Escherichia coli B088]
 gi|298378498|ref|ZP_06988382.1| type 1 fimbriae regulatory protein fimE [Escherichia coli FVEC1302]
 gi|301019652|ref|ZP_07183809.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 196-1]
 gi|306815503|ref|ZP_07449652.1| tyrosine recombinase [Escherichia coli NC101]
 gi|307312916|ref|ZP_07592544.1| integrase family protein [Escherichia coli W]
 gi|312966032|ref|ZP_07780258.1| phage integrase family protein [Escherichia coli 2362-75]
 gi|312969991|ref|ZP_07784173.1| phage integrase family protein [Escherichia coli 1827-70]
 gi|331650434|ref|ZP_08351506.1| type 1 fimbriae regulatory protein FimE [Escherichia coli M605]
 gi|331650787|ref|ZP_08351815.1| type 1 fimbriae regulatory protein FimE [Escherichia coli M718]
 gi|331660932|ref|ZP_08361864.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA206]
 gi|331665963|ref|ZP_08366857.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA143]
 gi|331666126|ref|ZP_08367007.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA271]
 gi|331671426|ref|ZP_08372224.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA280]
 gi|331680416|ref|ZP_08381075.1| type 1 fimbriae regulatory protein FimE [Escherichia coli H591]
 gi|332281083|ref|ZP_08393496.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Shigella sp. D9]
 gi|83286952|sp|P0ADH8|FIME_ECOL6 RecName: Full=Type 1 fimbriae regulatory protein fimE
 gi|83286953|sp|P0ADH7|FIME_ECOLI RecName: Full=Type 1 fimbriae regulatory protein fimE
 gi|83286954|sp|P0ADH9|FIME_SHIFL RecName: Full=Type 1 fimbriae regulatory protein fimE
 gi|26111632|gb|AAN83814.1|AE016771_325 Type 1 fimbriae Regulatory protein fimE [Escherichia coli CFT073]
 gi|537154|gb|AAA97209.1| recombinase involved in phase variation [Escherichia coli str. K-12
           substr. MG1655]
 gi|581086|emb|CAA27561.1| fimE [Escherichia coli]
 gi|1790768|gb|AAC77269.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli str. K-12 substr. MG1655]
 gi|24054724|gb|AAN45629.1| recombinase; regulator for fimA [Shigella flexneri 2a str. 301]
 gi|30043696|gb|AAP19415.1| recombinase; regulator for fimA [Shigella flexneri 2a str. 2457T]
 gi|85677056|dbj|BAE78306.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli str. K12 substr. W3110]
 gi|157069437|gb|ABV08692.1| type 1 fimbriae regulatory protein FimE [Escherichia coli HS]
 gi|170520295|gb|ACB18473.1| type 1 fimbriae regulatory protein FimE [Escherichia coli SMS-3-5]
 gi|190902838|gb|EDV62567.1| type 1 fimbriae regulatory protein FimE [Escherichia coli B7A]
 gi|192930683|gb|EDV83289.1| type 1 fimbriae regulatory protein FimE [Escherichia coli E22]
 gi|192956554|gb|EDV87011.1| type 1 fimbriae regulatory protein FimE [Escherichia coli E110019]
 gi|194415290|gb|EDX31558.1| type 1 fimbriae regulatory protein FimE [Escherichia coli B171]
 gi|209915036|dbj|BAG80110.1| type-1 fimbriae regulator FimE [Escherichia coli SE11]
 gi|218363613|emb|CAR01270.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli IAI1]
 gi|218368258|emb|CAR06075.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli S88]
 gi|218372997|emb|CAR20882.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli IAI39]
 gi|218435077|emb|CAR16031.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli UMN026]
 gi|226901966|gb|EEH88225.1| tyrosine recombinase [Escherichia sp. 3_2_53FAA]
 gi|242379830|emb|CAQ34661.1| regulator for fimA [Escherichia coli BL21(DE3)]
 gi|253326113|gb|ACT30715.1| integrase family protein [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253976137|gb|ACT41808.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli B str. REL606]
 gi|253980293|gb|ACT45963.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli BL21(DE3)]
 gi|257757130|dbj|BAI28632.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O26:H11 str. 11368]
 gi|257762276|dbj|BAI33773.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O103:H2 str. 12009]
 gi|257767389|dbj|BAI38884.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O111:H- str. 11128]
 gi|281181464|dbj|BAI57794.1| type 1 fimbriae regulator [Escherichia coli SE15]
 gi|281603521|gb|ADA76505.1| Type 1 fimbriae regulatory protein fimE [Shigella flexneri 2002017]
 gi|291321029|gb|EFE60471.1| type 1 fimbriae regulatory protein fimE [Escherichia coli B088]
 gi|291429885|gb|EFF02899.1| tyrosine recombinase [Escherichia coli FVEC1412]
 gi|291430495|gb|EFF03493.1| type 1 fimbriae regulatory protein fimE [Escherichia coli B185]
 gi|291472248|gb|EFF14730.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298280832|gb|EFI22333.1| type 1 fimbriae regulatory protein fimE [Escherichia coli FVEC1302]
 gi|299882113|gb|EFI90324.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 196-1]
 gi|305851165|gb|EFM51620.1| tyrosine recombinase [Escherichia coli NC101]
 gi|306907084|gb|EFN37591.1| integrase family protein [Escherichia coli W]
 gi|310337489|gb|EFQ02600.1| phage integrase family protein [Escherichia coli 1827-70]
 gi|312289275|gb|EFR17169.1| phage integrase family protein [Escherichia coli 2362-75]
 gi|313649987|gb|EFS14405.1| phage integrase family protein [Shigella flexneri 2a str. 2457T]
 gi|315063615|gb|ADT77942.1| tyrosine recombinase/inversion of on/off regulator of FimA
           [Escherichia coli W]
 gi|320200578|gb|EFW75164.1| type 1 fimbriae regulatory protein FimE [Escherichia coli EC4100B]
 gi|323157662|gb|EFZ43768.1| phage integrase family protein [Escherichia coli EPECa14]
 gi|323163313|gb|EFZ49141.1| phage integrase family protein [Escherichia coli E128010]
 gi|323182028|gb|EFZ67439.1| phage integrase family protein [Escherichia coli 1357]
 gi|323189837|gb|EFZ75115.1| phage integrase family protein [Escherichia coli RN587/1]
 gi|323380304|gb|ADX52572.1| integrase family protein [Escherichia coli KO11]
 gi|323935245|gb|EGB31598.1| phage integrase [Escherichia coli E1520]
 gi|323939682|gb|EGB35886.1| phage integrase [Escherichia coli E482]
 gi|323945829|gb|EGB41874.1| phage integrase [Escherichia coli H120]
 gi|323950597|gb|EGB46475.1| phage integrase [Escherichia coli H252]
 gi|323955384|gb|EGB51154.1| phage integrase [Escherichia coli H263]
 gi|323960179|gb|EGB55822.1| phage integrase [Escherichia coli H489]
 gi|323975621|gb|EGB70718.1| phage integrase [Escherichia coli TW10509]
 gi|324118516|gb|EGC12409.1| phage integrase [Escherichia coli E1167]
 gi|331040828|gb|EGI12986.1| type 1 fimbriae regulatory protein FimE [Escherichia coli M605]
 gi|331051241|gb|EGI23290.1| type 1 fimbriae regulatory protein FimE [Escherichia coli M718]
 gi|331051974|gb|EGI24013.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA206]
 gi|331057014|gb|EGI29008.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA143]
 gi|331066337|gb|EGI38214.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA271]
 gi|331071271|gb|EGI42628.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA280]
 gi|331071879|gb|EGI43215.1| type 1 fimbriae regulatory protein FimE [Escherichia coli H591]
 gi|332103435|gb|EGJ06781.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Shigella sp. D9]
 gi|332750457|gb|EGJ80867.1| phage integrase family protein [Shigella flexneri 2747-71]
 gi|332752103|gb|EGJ82495.1| phage integrase family protein [Shigella flexneri K-671]
 gi|332764696|gb|EGJ94925.1| phage integrase family protein [Shigella flexneri 2930-71]
 gi|333010405|gb|EGK29838.1| phage integrase family protein [Shigella flexneri VA-6]
 gi|333011280|gb|EGK30694.1| phage integrase family protein [Shigella flexneri K-272]
 gi|333012078|gb|EGK31461.1| phage integrase family protein [Shigella flexneri K-304]
 gi|333012176|gb|EGK31558.1| phage integrase family protein [Shigella flexneri K-227]
          Length = 198

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 70/174 (40%), Gaps = 7/174 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R L  K+   ++  V    +       AR+  ++ L Y  G+RISE L L  Q++  ++ 
Sbjct: 5   RYLTGKEVQAMMQAVCYGAT------GARDYCLILLAYRHGMRISELLDLHYQDLDLNEG 58

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            + I+  K     + PL    R+A+  +          +    +F   RG  L+     R
Sbjct: 59  RINIRRLKNGFSTVHPLRFDEREAVERWTQERANWKGADRTDAIFISRRGSRLSRQQAYR 118

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            IR      G    T  H LRH+    L   G D R IQ  LGH  +  T  YT
Sbjct: 119 IIRDAGIEAGTVTQTHPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYT 172


>gi|319648636|ref|ZP_08002848.1| integrase [Bacillus sp. BT1B_CT2]
 gi|317389284|gb|EFV70099.1| integrase [Bacillus sp. BT1B_CT2]
          Length = 405

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 41/312 (13%), Positives = 104/312 (33%), Gaps = 51/312 (16%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T++  + +  + + +  +          ++ ++  + +  ++  + +   + ++  +   
Sbjct: 96  TIRVRKHEISRLMDYFQYLK--------MKDITRKQYQEALNDLKARGYAENTIDGAHRT 147

Query: 95  IKSFLKYLKKRKITTESNILNMRNLK---------KSNSLPRALNEKQALTLVDNVLLHT 145
            +   K   + ++            K         +   LP+ L +++    +  +    
Sbjct: 148 GRMIFKRAIELEVIKTDPTEYAIVPKVQKTVEELEREKELPKYLEKEELAHFLSII---- 203

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI------ 199
                 +D R+  I   L   G+R  E  +L   +I  ++ T+ I       R       
Sbjct: 204 --PDHQMDIRDYPIFLTLAYTGMRAGELCALKWSDIDFEEQTISITKTYYNPRNAIKEYE 261

Query: 200 ---------VPLLPSVRKAILEYYDLCP--------FDLNLNIQLPLFRGIRG----KPL 238
                      ++   +  ++E   L               + +  +F  +       P 
Sbjct: 262 LLTPKTKKSKRVIDVTKDVLIELDKLRKAQKEVQMKHRKTYHNEGFVFAQLDEVNAGYPA 321

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-I 297
              + +  +++L +   L  S T H+LRH+  + L   G  L  I   LGH    TT+ I
Sbjct: 322 YVKLIEIRMKRLLKIANLNPSLTPHSLRHTHTSLLAEAGVSLEQIMDRLGHTDDDTTKNI 381

Query: 298 YTNVNSKNGGDW 309
           Y ++      + 
Sbjct: 382 YLHITKPKKKEA 393


>gi|71735945|ref|YP_274609.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71556498|gb|AAZ35709.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 321

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 62/295 (21%), Positives = 119/295 (40%), Gaps = 18/295 (6%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            ++ K  + +L  L      S+LT+     D    L          I       L    +
Sbjct: 20  PDVNKPLRLYLDRLAPS---SRLTMTYVLQDAADRLGMADV----DIHDIPWHTLQPGHV 72

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRAL 129
            A ++  R       +    ++ I+  +    +  + +   +L +R++K      L +  
Sbjct: 73  IALVATLREDDYAPNTTSLYVNAIRGVMNEAWRHDLISHEQLLKIRSIKPVSGTRLAKGR 132

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           N +   TL+  ++   + + +    R++AI+ +LYG G+R SE+++L    I   + +LR
Sbjct: 133 NIR--RTLIRELMEACAADPRPQGRRDAAIIAILYGSGMRKSESVNLDLSQIDFAERSLR 190

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNP-GVFQR 245
           + GKG+K  I        KA+ ++ +L    L        F   R  RG  +    + + 
Sbjct: 191 VLGKGNKQLIKYAPEWAFKALNDWLELRRSCLQPGQGDDPFLFNRIRRGSHITRDRITKH 250

Query: 246 YIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            I  + +  G  + ++   H  R SF T ++    DL   Q +  H  +STT  Y
Sbjct: 251 AIYFIAKQRGRQVGVNIMPHDFRRSFITRVIEE-FDLSIAQKLAHHTHISTTASY 304


>gi|86145355|ref|ZP_01063686.1| hypothetical protein MED222_05540 [Vibrio sp. MED222]
 gi|85836932|gb|EAQ55052.1| hypothetical protein MED222_05540 [Vibrio sp. MED222]
          Length = 160

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 50/148 (33%), Positives = 75/148 (50%), Gaps = 4/148 (2%)

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           GLR+ E L+LT  +I      + I+ GKG K R+VPL     KA+  ++          +
Sbjct: 2   GLRLGEGLNLTVHDIDSQTMRVHIREGKGGKDRMVPLPLRTLKALRTHWLSHKH---PRL 58

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
             P        P++ G  Q+ ++ + +   +    + H+LRH FATHLL  G DLRS+Q+
Sbjct: 59  LFPGLGKGDDAPMDRGGIQKTMKLVLKECDIQKHASPHSLRHCFATHLLEQGLDLRSLQT 118

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +LGH  L+TT  YT +      D  M I
Sbjct: 119 LLGHASLNTTARYTRMTQIKQRDAAMAI 146


>gi|330814764|ref|YP_004362939.1| integrase family protein [Burkholderia gladioli BSR3]
 gi|327374756|gb|AEA66107.1| integrase family protein [Burkholderia gladioli BSR3]
          Length = 390

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 124/361 (34%), Gaps = 60/361 (16%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           +I + + L     WL  +   +     T ++Y  +  + L++      + ++  ++    
Sbjct: 34  QIAANDDLAAVHAWLARVADTKT----TFENYRKEAERLLLWSIIQLGKPLS--SLTHED 87

Query: 68  YTEIRAFISKRRTQK----------------------IGDRSLKRSLSGIKSFLKYLKKR 105
               + F++  +                         +   S ++++  + +   +L   
Sbjct: 88  LLVYQHFLADPQPNGRWVAAGRKFARGDPRWRPFHGPLAASSQRQAMVILNALFSWLVGA 147

Query: 106 KITTESNIL--NMRNLKKSNSLPRALNEK--QALTLVDNVLLHTSHETKWIDARNSAILY 161
                + +     R  + +  + R L     Q +    + L   +   +    R   +  
Sbjct: 148 GYLAGNPLSLSRQRTRRVAPRVTRFLERDLWQEVKFYIDSLPRDTDRERARYGRARWLFT 207

Query: 162 LLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           LLY  GLRISE    T  +          ++  L I GKGDK+R+VP    +   +  Y 
Sbjct: 208 LLYLGGLRISEVSGNTMGDFFCRRDADGHERWWLEITGKGDKVRLVPASAEMMVELGRYR 267

Query: 215 DLCPFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIR----------------QLRRYL 254
                 +    + +  L L  G   KPL        ++                   R  
Sbjct: 268 RERGLAILPTGHEDTPLVLPLGQSMKPLTRAALHTIVKGIFAGAAEKLRMRGEECAARAA 327

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            L    +AH LRHS  +H+     DLR I+  LGH  ++TT +Y + +  +      + +
Sbjct: 328 QLER-ASAHWLRHSAGSHMADGDVDLRMIRDNLGHASITTTSLYLHADDDDRHQKTEQKH 386

Query: 315 D 315
            
Sbjct: 387 R 387


>gi|265763793|ref|ZP_06092361.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263256401|gb|EEZ27747.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 387

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 107/287 (37%), Gaps = 27/287 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           R L   T + ++   R+F  +               +L+   +R ++   + T    D +
Sbjct: 117 RRLEIGTFRHHKSCMRKFKEYCEGLQ--------FHELTEDFLRDYLIYMKKTLCNADST 168

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
            +R+LS IK ++    K+         +   +K+  S    L E++ +  +         
Sbjct: 169 AQRNLSTIKIYVSAAIKKGYMENDPFKDF-GVKRIKSNIDYLTEEELIKFISLYYDRRLP 227

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKGDKIRIVPLLP 204
           E              +    L IS+A  +  + I +   T   ++ +    +   +PL  
Sbjct: 228 ERLERTLG---FFLFMCFTSLHISDARHVCLEQINNGILTYYRIKNRNCKPEAIKIPLSI 284

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
              K I E             +  LF  ++       V  R I+++   L +    +A T
Sbjct: 285 PAFKIIEE-------LQGKRKEGHLFTSLQCD----QVVNRQIKEIASILEIKKKVSAKT 333

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            RH+FAT  L    D+ ++Q +LGH  L  T IY +V  ++  + M 
Sbjct: 334 GRHTFATIFLKKTKDVATLQKLLGHSNLKETMIYAHVLDESKQEGMQ 380


>gi|253565241|ref|ZP_04842696.1| integrase [Bacteroides sp. 3_2_5]
 gi|251945520|gb|EES85927.1| integrase [Bacteroides sp. 3_2_5]
          Length = 395

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 107/276 (38%), Gaps = 26/276 (9%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97
           SY+    + L F      + I+   + +    E + ++    T    + ++ +SL  +++
Sbjct: 141 SYKSQITKLLKF-----RKHISFADLTEKFINEYQHYM--LYTLHNNENTVSKSLRSLRT 193

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
           F+    +  +   +    +  +KK +     L+ ++   L D  + +   + +  +    
Sbjct: 194 FINIAMRYGLIKTNPFKYI-TIKKVDGKRDFLSAEELSKLSDAYISNKIIDEQEKEVLQY 252

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDL 216
            +       GLR S+   L   +I    + L I   K + +  +PL     + +    + 
Sbjct: 253 FLFSC--YTGLRYSDLKMLKTSSI--KNNILHINMHKTNCLVSIPLSQKALQLLPNKIN- 307

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
                  +    +FR    K     V  R ++Q+ +  G+P   T H  RH+FAT  +  
Sbjct: 308 -------SESDYVFRVYCNK-----VTNRVLKQVGKRYGIPKKLTCHVARHTFATVSIIL 355

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           G  +  +  +LGH  L TTQIY  +        M +
Sbjct: 356 GIPIEVVSKLLGHSSLKTTQIYAKIVDSVKEREMEK 391


>gi|302384970|ref|YP_003820792.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302195598|gb|ADL03169.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 286

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 47/301 (15%), Positives = 116/301 (38%), Gaps = 35/301 (11%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +   ++   LE    +S  T+  Y    +QFL      + + + +           + ++
Sbjct: 19  QSLDDFHDYLEF-NNMSSNTIHVYLYAVKQFLGLYHVISHDNLML----------YKCYL 67

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                +    +++   +  +           +   S+ + M  +++   L   +++    
Sbjct: 68  ----MEHYKPQTVNLRIRAL-----NCYMESLKLSSSKMLMIRIQQKTFLENVISQADYE 118

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L   ++          +     ++  +   G+R+SE + +  +++      + I  K +
Sbjct: 119 YLKKCLIRSG-------NMLYYFVIRFMAATGVRVSELVQIKVEHV--KCGHMDIYSKDN 169

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           KIR + +  S+R   L++ +         +   +F    G P+ P   +  +++      
Sbjct: 170 KIRRIYIPKSLRVDALKWLNQID-----RVSGYVFLNRYGDPITPAGIRGQLKKFTVLYD 224

Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           L  +    H+ RH FA + + N GD+  +  ILGH  + TT+IY + +S      + +I 
Sbjct: 225 LDPNVVYPHSFRHRFAKNFIENCGDISMLSDILGHESIETTRIYLHRSSTEQKQIVNQIV 284

Query: 315 D 315
           +
Sbjct: 285 N 285


>gi|260592906|ref|ZP_05858364.1| integrase [Prevotella veroralis F0319]
 gi|260535106|gb|EEX17723.1| integrase [Prevotella veroralis F0319]
          Length = 406

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 67/319 (21%), Positives = 131/319 (41%), Gaps = 31/319 (9%)

Query: 14  LLKERQNWL----QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLS 67
           LL+    +L    + + I+R L    L++Y+      L  L  Y ++K  +  I   QL 
Sbjct: 110 LLESFGEYLTQTKERIGIDRALKTFKLRTYQ------LSLLREYVQKKHKVSDIPLSQLD 163

Query: 68  YTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
              I  F       +K+   S+  +LS +++ ++   K+ +      L   + ++    P
Sbjct: 164 KAFIEGFEYYLTIDRKLKRSSISSTLSTLQTIVRMAVKKGVLDFYPFLGY-SYERPKGEP 222

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R++ + +   ++D   L    E   I      +       GL IS+  +L  +NI+ ++ 
Sbjct: 223 RSITQDELQKIID---LEIEWENYRIV---RDLFVFSCFTGLAISDVRNLREENIVFEEG 276

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            L I+G+  K +    +  +  A+                +P             +    
Sbjct: 277 ELCIKGRRMKTKTPYRVQVLPPALEIMNRYRGIRAGFVFDVP----------TTDIILNG 326

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +  ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQIY  V+S+ 
Sbjct: 327 MHYIQRNIGMKTPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAAVSSER 386

Query: 306 GGDWMMEIYDQTHPSITQK 324
               M ++  +   + T K
Sbjct: 387 IHRDMQKVQQRIQDTFTLK 405


>gi|257881842|ref|ZP_05661495.1| integrase [Enterococcus faecium 1,231,502]
 gi|294619302|ref|ZP_06698771.1| integrase [Enterococcus faecium E1679]
 gi|257817500|gb|EEV44828.1| integrase [Enterococcus faecium 1,231,502]
 gi|291594462|gb|EFF25870.1| integrase [Enterococcus faecium E1679]
          Length = 382

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 57/337 (16%), Positives = 114/337 (33%), Gaps = 40/337 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKI 58
           ++   +P   +    +  + WL++        K T++  SY        I    +   K 
Sbjct: 56  LQKTGMPTSTNTTFKEAAELWLESY-------KKTVKESSYSRT----KIIFNKHIYPKF 104

Query: 59  TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
               + +++    +  ++    +    +     ++ +    KY     +T+++  LN+  
Sbjct: 105 GNIKLSKINTAYCQKVVNDWSEKGTSKQ-YPLFINYMNKVFKYAINIGLTSDNPTLNLLI 163

Query: 119 LKKSNSLPRAL---NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
            K      + L    ++Q    ++ V   +  +  +   R+  +  LL   G RI E L+
Sbjct: 164 PKPQIKTEKKLKLYTKEQLELFLNEV---SQEQNPYFKNRDYTLFRLLAFSGCRIGEILA 220

Query: 176 LTPQNIMDDQSTLRIQGK---------------GDKIRIVPLLPSVRKAILEY---YDLC 217
           LT  NI    + + I+                     RI+ L     K +  +       
Sbjct: 221 LTWDNINFKTNEMAIKKTVARSDKYYISETPKTKKSNRIIYLDEKTIKQLKFWKLEQRKY 280

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            F L       LF                    R   GLP     H  RH+ A+ L   G
Sbjct: 281 LFQLGFTKANYLFTNDENNFTINQSVAERYNIYRERAGLPY-IGLHGFRHTHASMLYEAG 339

Query: 278 GDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
            D + +Q  +GH  + TT   YT++ +    +   ++
Sbjct: 340 ADHKEVQERMGHANIKTTMDTYTHITNSKKEETTQKL 376


>gi|330985498|gb|EGH83601.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. lachrymans str. M301315]
 gi|331008203|gb|EGH88260.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 321

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 62/295 (21%), Positives = 119/295 (40%), Gaps = 18/295 (6%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            ++ K  + +L  L      S+LT+     D    L          I       L    +
Sbjct: 20  PDVNKPLRLYLDRLAPS---SRLTMTYVLQDAADRLGMADV----DIHDIPWHTLQPGHV 72

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRAL 129
            A ++  R       +    ++ I+  +    +  + +   +L +R++K      L +  
Sbjct: 73  TALVATLREDDYAPNTTSLYVNAIRGVMNEAWRHDLISHEQLLKIRSIKPVSGTRLAKGR 132

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           N +   TL+  ++   + + +    R++AI+ +LYG G+R SE+++L    I   + +LR
Sbjct: 133 NIR--RTLIRELMQACAADPRPQGRRDAAIIAILYGSGMRKSESVNLDLSQIDFAERSLR 190

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNP-GVFQR 245
           + GKG+K  I        KA+ ++ +L    L        F   R  RG  +    + + 
Sbjct: 191 VLGKGNKQLIKYAPEWAFKALNDWLELRRSCLQPGQGDDPFLFNRIRRGSHITRDRITKH 250

Query: 246 YIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            I  + +  G  + ++   H  R SF T ++    DL   Q +  H  +STT  Y
Sbjct: 251 AIYFIAKQRGRQVGVNIMPHDFRRSFITRVIEE-FDLSIAQKLAHHTHISTTASY 304


>gi|257459633|ref|ZP_05624742.1| hydrogenase expression/formation protein [Campylobacter gracilis
           RM3268]
 gi|257443058|gb|EEV18192.1| hydrogenase expression/formation protein [Campylobacter gracilis
           RM3268]
          Length = 186

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 51/182 (28%), Positives = 89/182 (48%), Gaps = 10/182 (5%)

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-- 186
           ++E++    +D + L    E +    RN  I+ ++   G+R+ EA++L  ++I  +    
Sbjct: 1   MSEEELKRFLDAINLS---EFRSFAHRNRLIVKIIVYTGIRVGEAINLKRKDIAPEGDLF 57

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            +RI+GKG+K RIV +    ++ ++E +         N +  LF    G PL        
Sbjct: 58  VIRIRGKGNKYRIVMI----KRHLIEEHLNALETNFANKEGYLFVTKNGAPLTQAYVSGI 113

Query: 247 IRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           + ++    G+      AH LRH+FAT L     DL  +Q  LGH  L+T++IYT+ +S  
Sbjct: 114 VEKILMSAGIRKEKNGAHMLRHTFATMLYKKQKDLVLVQEALGHASLNTSRIYTHFDSDK 173

Query: 306 GG 307
             
Sbjct: 174 LR 175


>gi|254776421|ref|ZP_05217937.1| phage integrase family protein [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 364

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 53/295 (17%), Positives = 101/295 (34%), Gaps = 27/295 (9%)

Query: 20  NWLQ-NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            WL  ++    G+ K T+  Y+        +        +    + +L+  +I  ++++ 
Sbjct: 75  EWLDRHIGSLTGVEKKTISEYQR-------YATRDIGPPLGAIPLGKLTREDIAEWVNEM 127

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   +++     +   LK   +      +    +R  +        L   +  TL 
Sbjct: 128 FEAGAAGGTIENKHGFLSGALKRAVEDGHLAANPCQGIRLPRTEEQEMVCLTRDEFQTL- 186

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG--KGDK 196
                          A    ++  L   G R SEAL+L P ++  + ST+RI    K   
Sbjct: 187 ----------KAAFSAHYRPLVEFLVASGCRASEALALRPSDVDREASTVRIARAWKRAG 236

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLN----PGVFQRYIRQLR 251
                  P  ++++            L+     LF G  G P+                 
Sbjct: 237 SGYELGPPKTKRSVRTINVPKSVLDQLDYGGEWLFTGTNGGPVRIYSWRSNVWYKSLAKA 296

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKN 305
           +  GL      H LRH+ A+ ++ NG  L  I+  LGH  + TT   Y +++  +
Sbjct: 297 QKNGLAKRPRVHDLRHTCASWMIQNGAPLPLIRDHLGHESIKTTVDCYGHLDRND 351


>gi|154487218|ref|ZP_02028625.1| hypothetical protein BIFADO_01059 [Bifidobacterium adolescentis
           L2-32]
 gi|154085081|gb|EDN84126.1| hypothetical protein BIFADO_01059 [Bifidobacterium adolescentis
           L2-32]
          Length = 287

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 54/273 (19%), Positives = 98/273 (35%), Gaps = 26/273 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSL 88
           GL+  T   Y     ++L + A    + +  +       T I  F +     +     ++
Sbjct: 14  GLTPGTRAGYRSVVSRWLRWCADNGIDMLRAK------RTHIEVFAAYDGGMRPAAKNTV 67

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKK-SNSLPRALNEKQALTLVDNVLLHTSH 147
            R+LS +    +YL +      +   ++R  K   +S    L  +QA   +         
Sbjct: 68  CRNLSVVCCLYRYLCEEGYIDCNPGEHVRRPKLYGHSDGTYLTREQARLFL--------T 119

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPS 205
           E + + AR  A+  LL   G R+ EAL L  ++   +     +R   KGD  + V +   
Sbjct: 120 EARGMGARTDALCSLLLLTGARVGEALGLDVEDCHLNDGRPWVRFDRKGDWSQRVAIPSD 179

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
             +A+          +    +  +FR   G  L        +  +   +G+P   + H+L
Sbjct: 180 AAEALA-------RLIGERRRGAVFREDSGARLRQQTAVGIVSSVALRVGVP-DISPHSL 231

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           R +F T     G   R I +  G         Y
Sbjct: 232 RRTFCTLSRDAGVPDRDIMAAGGWNSPQMLDYY 264


>gi|282164442|ref|YP_003356827.1| putative site-specific recombinase [Methanocella paludicola SANAE]
 gi|282156756|dbj|BAI61844.1| putative site-specific recombinase [Methanocella paludicola SANAE]
          Length = 289

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 61/305 (20%), Positives = 117/305 (38%), Gaps = 40/305 (13%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + +  ER LS       + +T+Q +  L         ++  R+L Y  I         + 
Sbjct: 10  EYMLYERRLS-------QYNTKQAVALLRKIINNYRVLKPSRELGYR-IE---HDLADKG 58

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
              R+++  L+ ++ +    K +   ++  +L  +  K  +    +L  ++A  L+D   
Sbjct: 59  RKPRTIRNHLTVLELWADAFKIKD--SDGKLLKFKMPKIDSHRIDSLTSEEARALLDYGA 116

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG-------- 194
           L           R++AILYLL  C +R  E ++   +++   +    ++ K         
Sbjct: 117 L---------TLRDNAILYLLVYCAIRPKELINADVEDVDLIERKFYVRAKYDVDIESPG 167

Query: 195 ---DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
               + R +P+     KAI  Y D    +        LF    G  +     Q  +R   
Sbjct: 168 IKSHREREIPISRECAKAIRTYLDEGRPNY---PTKALFFTNLGNRIAIRTLQDIVRDAA 224

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +  G+   T  +  RHS  T ++ +  +L  I  I+GH  L  T+ Y++         M 
Sbjct: 225 KRAGIKRRTYPYLCRHSGCTLMVESNINLLYISKIMGHSTLEQTRAYSH----PQWRAMR 280

Query: 312 EIYDQ 316
           E  D+
Sbjct: 281 EAIDK 285


>gi|290474812|ref|YP_003467692.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii
           SS-2004]
 gi|289174125|emb|CBJ80912.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii
           SS-2004]
          Length = 210

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 43/174 (24%), Positives = 67/174 (38%), Gaps = 7/174 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L   +   L+         E      RN  + ++ +  G R+SE L L   ++     
Sbjct: 5   KYLTHSEIEQLL------AELEKGPNAERNICMFFMGFIHGFRVSELLRLRMSDVDLRDR 58

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
           +L +   K     I P++    + I ++  +            LF    G+PL+   F +
Sbjct: 59  SLSVNRLKNGFSTIHPMIAREIQLIRKWMTIRKKLEKFGKSEWLFISRTGEPLSRQQFYK 118

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            IR       + +    H LRHS    L  NG D R IQ  LGH  +  T IYT
Sbjct: 119 IIRNTSIKAEIAICANPHMLRHSCGYALADNGVDTRLIQDYLGHRNIRHTVIYT 172


>gi|255284416|ref|ZP_05348971.1| transposase [Bryantella formatexigens DSM 14469]
 gi|255265041|gb|EET58246.1| transposase [Bryantella formatexigens DSM 14469]
          Length = 424

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 46/323 (14%), Positives = 117/323 (36%), Gaps = 41/323 (12%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + +  + G+   T   Y    R          +E    + I Q+  ++ + F+ K +++ 
Sbjct: 92  RYIRTKTGVRDSTRAGYRTVQRTL-------EKESFGEKKISQVKVSDAKLFLIKLQSEG 144

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLKKSNSLPR-ALNEKQALTLVDN 140
            G  S+      ++   +      +  ++     +  +  ++S+ R A+ ++Q    +  
Sbjct: 145 KGYSSIHSIRGVLRPAFQMAVDDDVLHKNPFGFELATVIVNDSVTREAITKEQMRKFLKF 204

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--------- 191
           +          +  +   ++Y+L+  G+RISE   LT ++I  +   + I          
Sbjct: 205 I------HDDNVYCKYYEVVYILFHTGMRISEFCGLTLKDIDLENRIINIDHQLLRTSEM 258

Query: 192 -----------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-- 238
                      G         +    +  I +        +       LF    G PL  
Sbjct: 259 KYVIEATKTNAGTRKLPMTDDVFRCFQAIIEDREAPRLEKIVDGHTGFLFTDKDGMPLVA 318

Query: 239 --NPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                 F   +++      +   + T H  RH++ +++  +G + +++Q ++GH  +  T
Sbjct: 319 MHWEHRFNHMVKRYNDICRVQMPNITPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDIGVT 378

Query: 296 -QIYTNVNSKNGGDWMMEIYDQT 317
              YT++  ++  D +  + +  
Sbjct: 379 LNTYTHLGLEDAADELKRMEELA 401


>gi|330909749|gb|EGH38259.1| type 1 fimbriae regulatory protein FimE [Escherichia coli AA86]
          Length = 202

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 70/174 (40%), Gaps = 7/174 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R L  K+   ++  V    +       AR+  ++ L Y  G+RISE L L  Q++  ++ 
Sbjct: 5   RYLTGKEVQAMMQAVCYGAT------GARDYCLILLAYRHGMRISELLDLHYQDLDLNEG 58

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            + I+  K     + PL    R+A+  +          +    +F   RG  L+     R
Sbjct: 59  RINIRRLKNGFSTVHPLRFDEREAVERWTQERANWKGADRTDAIFISRRGSRLSRQQAYR 118

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            IR      G    T  H LRH+    L   G D R IQ  LGH  +  T  YT
Sbjct: 119 IIRDAGIEAGTVTQTHPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYT 172


>gi|326407220|gb|ADZ64291.1| integrase [Lactococcus lactis subsp. lactis CV56]
          Length = 403

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 61/258 (23%), Positives = 104/258 (40%), Gaps = 25/258 (9%)

Query: 75  ISKRRTQKIGDRS-LKRSLSGIKSFLKYLKKRKITTESNILNM--RNLKKS--NSLPRAL 129
           ++ R+ +K G+ S  KR  + I   +KY     + + +  L +   N+K        +  
Sbjct: 136 LNGRQARKKGEMSDYKRLYTIINRIMKYAISNGLISSNPCLTVLMPNVKVESTKKEIKFF 195

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            + Q  +L D +    S +  W       +L  L   GLRI EA++L+  +I   Q T+ 
Sbjct: 196 TKSQLQSLFDYLDNQASPQ--WKMRLLRNLLPFLASTGLRIGEAVALSWSDIDFKQGTVT 253

Query: 190 IQGKGDKIRIVPLLPSVRKA------------ILEYYDLCPFDLNLNIQLP----LFRGI 233
           +    +    + L P    +            +L  + L      L    P    LF  I
Sbjct: 254 VSKTVNDSNQIQLSPKTETSNRTIDIDKSTLNLLSKWQLEIKKEFLKYGNPNQPLLFPNI 313

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            G  LN  + +  +      +GLP +   H  RH+ AT  LS G   ++IQ+ LGH  L 
Sbjct: 314 NGSVLNSRLLRNTLLDCFENVGLP-NIGFHGFRHTHATLCLSAGMSYKAIQTRLGHSTLQ 372

Query: 294 TTQ-IYTNVNSKNGGDWM 310
            T  IY ++  +   + +
Sbjct: 373 MTMDIYAHLEPETAKNEL 390


>gi|306834506|ref|ZP_07467619.1| phage integrase family integrase/recombinase [Streptococcus bovis
           ATCC 700338]
 gi|304423308|gb|EFM26461.1| phage integrase family integrase/recombinase [Streptococcus bovis
           ATCC 700338]
          Length = 388

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 54/295 (18%), Positives = 108/295 (36%), Gaps = 27/295 (9%)

Query: 34  LTLQSYECDTR-QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
            T ++ E   R   L     Y  EK+T   I+Q    ++  + +     K G       L
Sbjct: 88  NTRKAVEGQIRVHLLPAFGDYKLEKLTTPIIQQ----QVNKWANDYNKGKKGSYKHYNQL 143

Query: 93  SGI-KSFLKYLKKRKITTESNILNMRNLKKSNS---LPRALNEKQALTLVDNVLLHTSHE 148
             + K  L+Y    ++   +    +   +K  +     + L++++     D   L T  +
Sbjct: 144 HALNKRILQYAVIMQLIPFNPAREVIVPRKKQTEEIKIKFLDKQELKQFYDY--LDTLDK 201

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI----------- 197
           +K+ +  +  +   L   G RI E L+L   +I  D   + I    ++            
Sbjct: 202 SKYYNLFDVVLYKTLLATGCRIGEVLALEWSDIDLDNGYISINKTLNRDDEVNCPKSKAG 261

Query: 198 -RIVPLLPSVRKAILEY--YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            R + +  +    +  Y          +   +  +F     K  +    +R + +  +  
Sbjct: 262 YRDISIDKATILMLKHYKNRQTIQAWQHKRTETVVFSTFVNKYASQPALRRRLERHLKNA 321

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
           G+      H LRH+ AT +L+ G   + +Q  LGH  +S T   Y +V  +   +
Sbjct: 322 GVSY-VAFHGLRHTHATIMLNAGIQPKDLQYRLGHSNISMTLNTYVHVTKEGAKN 375


>gi|307564939|ref|ZP_07627459.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307346379|gb|EFN91696.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 410

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 62/286 (21%), Positives = 106/286 (37%), Gaps = 24/286 (8%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLS 93
           TLQ Y    + F  FL        +   + +L Y  I  F    RT       +  R + 
Sbjct: 132 TLQKYNVCKKHFSNFLRDKYGR--SDIRLSELGYIVIHDFDIYLRTVVGQNPNTATRMMK 189

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
             K+     +K  +      LN+R   +  +    L +++ L +      +       ++
Sbjct: 190 TFKTITILGRKLGVLHHDPFLNIRFHMEPVNR-GFLTDEEILKI-----ANKDFGIGRLE 243

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
                 ++  +  GL   +  +L P+NI      Q  +  + K      V LL   +  I
Sbjct: 244 LVRDVFVFSCF-TGLAYIDVYNLAPENIVTLNGKQWIMTKRQKTSVETNVLLLDIPKSII 302

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            +Y      D           G     L       Y++++    G+  + T H  RH+FA
Sbjct: 303 AKYSGKTYRD-----------GKLFPMLTNQKLNSYLKEIADICGIKKNLTFHLARHTFA 351

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           T  LS G  + S+  +LGH  + TTQIY  + +K     M E+ D+
Sbjct: 352 TMSLSKGVPIESVSKMLGHTNIKTTQIYARITNKKIEHDMDELADK 397


>gi|296164225|ref|ZP_06846818.1| possible site specific recombinase XerD [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295900416|gb|EFG79829.1| possible site specific recombinase XerD [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 258

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 91/239 (38%), Gaps = 23/239 (9%)

Query: 54  TEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI 113
           + E I      +L+   +RA  +    +     S++R  S       YL   ++   + +
Sbjct: 6   SGEGILTLRTTELTKEHLRAAFA-LYAETHSPASIRRCWSTWNVLCTYLFMAELLDANPM 64

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLL-HTSHETKWIDARNSAILYLLYGCGLRISE 172
             +   K   SLP++   +    LV  +     S        R+ AI++     GLR  E
Sbjct: 65  PLIGRPKVPKSLPKSYRTETVTQLVSAIDSGRDSTRRNAWPERDRAIVFTALLAGLRAEE 124

Query: 173 ALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-------- 221
            +     +I    D    L ++GKG+K R +P+   + K + +Y +              
Sbjct: 125 LIGADVGDIRRTDDGGGVLHVRGKGNKDRRIPVSGELLKVVEKYLESRAARFPQSRRRSQ 184

Query: 222 ------NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA----HTLRHSFA 270
                 + + + PLF G  G+ +  G  Q  I +  +  G+    ++    H LRH+F 
Sbjct: 185 GSDALTDFSPKAPLFVGADGERITRGTLQYRILRAFKAAGIDSERSSGALVHGLRHTFV 243


>gi|226363393|ref|YP_002781175.1| integrase [Rhodococcus opacus B4]
 gi|226241882|dbj|BAH52230.1| putative integrase [Rhodococcus opacus B4]
          Length = 368

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 60/309 (19%), Positives = 112/309 (36%), Gaps = 42/309 (13%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
            +ER  S L   +Y             + + +     +  +    +  +I+     K G 
Sbjct: 71  WLERKESDLKPSAYRS----LETSWRVHVKPRWGTVRLSDVDLDAVERWIADLNRTK-GA 125

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLVDNVLLH 144
             + R+   +   L    K K    +    + NL +    PR  L   +   L D+    
Sbjct: 126 TVVIRAYGVLAGILDSAVKGKRLARNPARGVENLPRKQRKPRVYLTHDEVAALADS---- 181

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-------------- 190
                        A++ +L  CGLR  EA+ L  +++   +    +              
Sbjct: 182 --------AGEKRALVLVLAYCGLRWGEAIGLRVRHLDLLRKRATVVENAVQVNMEMHVG 233

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV-FQRYIRQ 249
             K  K R VP+   V + +    +    D        +F G  G  L   V F  +  +
Sbjct: 234 TPKSHKSRSVPIPGFVVEELARQCEGKGRD------DLVFPGRDGDYLKRSVSFTGWFTK 287

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
                G+P   T H LRH+ A+  ++ G +++S+Q +LGH   + T   Y+++  ++  D
Sbjct: 288 AVEKSGVPR-LTPHDLRHTCASLSIAAGANVKSLQRMLGHASAAMTLDTYSDL-FEDDLD 345

Query: 309 WMMEIYDQT 317
            + +  DQ 
Sbjct: 346 AVGDALDQA 354


>gi|124008447|ref|ZP_01693141.1| phage integrase family protein [Microscilla marina ATCC 23134]
 gi|123986095|gb|EAY25938.1| phage integrase family protein [Microscilla marina ATCC 23134]
          Length = 425

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 55/292 (18%), Positives = 107/292 (36%), Gaps = 38/292 (13%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L  +  E G+S  +  +Y      F  FL                SY   RA++   + +
Sbjct: 142 LHYIS-EAGVSPGSEDTYIAVLNLFFEFLDDRGLM---------FSYVATRAYLEHCQYK 191

Query: 82  KIGDRSLKRSLSGIK---SFLKYLKKRKITTESNILNMRNLKKSNSLP--------RALN 130
            +   +    L+ IK   ++L+         + +  ++  +++               LN
Sbjct: 192 DLAAHTRALYLTCIKNVAAYLQDHSHEYNINDDDYKDLGRIQRIKRAKLSTQRYYKDPLN 251

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           E++   L+ + +  +            A+  L+  CGLRI E LSL   ++      L +
Sbjct: 252 EQERELLLSSEVSPSP--------TYRAMWSLMAFCGLRIKEVLSLKVNDLDFGNDVLWV 303

Query: 191 QGKGDKIRIVP-LLPSVRKAILEYYDLCPF---DLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            GKG   +         +  + +Y  + P    DL   +            L      + 
Sbjct: 304 LGKGLSTKEPCRFFKRAQACVHKYLKIKPLTINDLLFEMSYAKAEKEFRASLERMGLSKA 363

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           ++Q +R        T H+LRH+ A  + ++G  +  IQ  L H  +++T +Y
Sbjct: 364 VQQAQRR-----KVTLHSLRHTCAQLMYAHGNSIEIIQKQLRHRSIASTMVY 410


>gi|237719265|ref|ZP_04549746.1| integrase [Bacteroides sp. 2_2_4]
 gi|229451644|gb|EEO57435.1| integrase [Bacteroides sp. 2_2_4]
          Length = 420

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 62/308 (20%), Positives = 117/308 (37%), Gaps = 24/308 (7%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           + L   T   Y    +  L F+   Y      +  I +    E  A++   + +     +
Sbjct: 124 KNLRASTFVGYHVTKKHLLNFIRIKYHVSDYDLTAIDKAFVYEFYAYLQGYKREGETVCA 183

Query: 88  LKRSLSGIKSFLKYL---KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           +  +L  I+ F K +    + +  + + +  + N KK+      L+EK+  ++ +  L  
Sbjct: 184 VNGALKHIQRFKKVMNVALQNEWISRNPVCLL-NAKKTKVERGFLSEKELKSIEEVPL-- 240

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVP 201
                    +    +       GL   +  +LT +NI    D    L    +   I  + 
Sbjct: 241 -----PVNLSIVRDVFVFAVYTGLSFVDISNLTNENINVGIDKSLWLNYYRQKTDIHAML 295

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            L      IL+ Y+        N   P+            V  RY++++ +  G+  + T
Sbjct: 296 PLLQPAVCILKRYEAYHKGKRTNHVFPVPPN--------QVANRYLKKVAKEAGVEKNIT 347

Query: 262 AHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
            H  RH+FAT + LS+G  + ++  +LGH  + TTQIY  +      D M  + +     
Sbjct: 348 FHMARHTFATTITLSHGIPIETVSKMLGHTSIKTTQIYAKILDTKVMDDMAALKELYTRK 407

Query: 321 ITQKDKKN 328
            +QK   N
Sbjct: 408 ESQKSPDN 415


>gi|237713338|ref|ZP_04543819.1| tyrosine type site-specific recombinase [Bacteroides sp. D1]
 gi|317502920|ref|ZP_07961015.1| integrase [Prevotella salivae DSM 15606]
 gi|229446577|gb|EEO52368.1| tyrosine type site-specific recombinase [Bacteroides sp. D1]
 gi|315665954|gb|EFV05526.1| integrase [Prevotella salivae DSM 15606]
          Length = 437

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 106/291 (36%), Gaps = 27/291 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K TL  Y    +    FL   Y  + I ++ +     ++   F+  R  +     ++  
Sbjct: 156 AKGTLLKYRTVYKHMQEFLDIRYHVKDIALKELTPAFISDFEMFL--RTDKHCCTNTVWL 213

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +  +++ +      +  T         +KK  +    L + +   L++  L +   E  
Sbjct: 214 YVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKDEIRLLMEGKLKNAKQE-- 270

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRIQG-KGDKIRIVPLLPSV 206
                   +       GL  ++  +LT +N     D+   + I   K   +  + LL   
Sbjct: 271 ----LYRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRQKTGVVSNIRLLDIA 326

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            + I +Y  LC           +F          G     IR + +  G+    T H  R
Sbjct: 327 NRIIGKYRGLC-------GDGRIFPVPHYNTCLAG-----IRAVAKRCGITKHITWHQSR 374

Query: 267 HSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           H+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +     M  +  +
Sbjct: 375 HTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMENLAAR 425


>gi|226325969|ref|ZP_03801487.1| hypothetical protein COPCOM_03782 [Coprococcus comes ATCC 27758]
 gi|225205511|gb|EEG87865.1| hypothetical protein COPCOM_03782 [Coprococcus comes ATCC 27758]
          Length = 373

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 51/322 (15%), Positives = 112/322 (34%), Gaps = 36/322 (11%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L++  + WL+  +  R +   T  SYE        +       ++  + + ++    I+ 
Sbjct: 66  LMEWYETWLEEYKKNR-VKIGTYTSYE-------KYYKSTINNRLGNKELSEIRGEHIQK 117

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             +    +     S+K   + +   L+   K  +   + +      +++ +      E+ 
Sbjct: 118 LYNDMVKEGYAISSIKIVSAILNGCLQQAMKNGLIERNPVKLAELPRQTGTKK----ERT 173

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           A+T     L     E  ++         ++   G+R  E   L   +I   Q+ + ++  
Sbjct: 174 AMTKEQQDLFMKYAEESYLYH----FFSVMLRTGMRKGEMQGLKYSDIDKKQNVIHVRRT 229

Query: 194 GDKIRIVPLLPS---------------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
              I                            +E          + +   LF    G P+
Sbjct: 230 LKYIEGKGYFEDTPKTRTSTRDIPLTAAITEHIEAQRKYWGFKVVRMDQYLFCNENGDPI 289

Query: 239 NPGVFQRYIRQLRRYLGLP----LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           +    Q  I ++ + +          T+H  RH+FAT  +  G   + +++ILGH  L+ 
Sbjct: 290 SRERIQGEIDRIIKRIKSDGYDFPRITSHVFRHTFATRAIEAGMPPQVLKTILGHSSLAM 349

Query: 295 TQ-IYTNVNSKNGGDWMMEIYD 315
           T  +Y++V      D M +I +
Sbjct: 350 TMDLYSHVLPDTKADEMQKIAN 371


>gi|118577353|ref|YP_899593.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
 gi|118504858|gb|ABL01340.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
          Length = 318

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 130/320 (40%), Gaps = 25/320 (7%)

Query: 11  SFELLKERQNWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           S  +  + Q W+     E   + LS  T   Y      F+     +  E      I  ++
Sbjct: 5   SGNITDDLQRWVVAYMQEITNKNLSGRTRDIYAGILDDFVEHSRQFQGE----LGIEDIN 60

Query: 68  YTEIRAFISKRRT--QKIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNLKKSN 123
              +  ++++R    ++    + K  ++ +K+F  Y+ +          +    N+K  +
Sbjct: 61  RIFLNGYLAERGNTGRRFSATTKKLHITVLKTFFLYITENNDNNHDFEKMFKKMNIKSES 120

Query: 124 SLPRALNEKQALTLVDN-VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           +   ALNE     L++    +  +   +  + RN+ +  ++   GLR  E   L  ++++
Sbjct: 121 NEKPALNEDDVQRLLNYLEKIKRARRNQNTNIRNTLLCKIMLFGGLRAVELTHLRLKDMV 180

Query: 183 ----DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
               DD  +L I+GKG K R V +  ++ +  +E             +  L    R   +
Sbjct: 181 YDKEDDIYSLLIEGKGGKQRTVYIPRTLIEDEVETLKEEY------GEEWLICSTRNGTI 234

Query: 239 -NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
            +     + I  + +  G+   T  H LRH+FA  L++N  +L +I+ +LGH  ++ T +
Sbjct: 235 VDRTNLYQIITGIYKRAGVD-HTGLHILRHTFARRLVNNNTNLETIRDLLGHSNIAITAK 293

Query: 297 IYTNVNSKNGGDWMMEIYDQ 316
            Y   N  N    +  +  +
Sbjct: 294 FYAKTNENNKKAAISRLMKE 313


>gi|260593521|ref|ZP_05858979.1| integrase [Prevotella veroralis F0319]
 gi|260534509|gb|EEX17126.1| integrase [Prevotella veroralis F0319]
          Length = 417

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 108/278 (38%), Gaps = 17/278 (6%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
                +F+ +   Y  E I +Q        ++  + +K +  K+        L+ + S L
Sbjct: 142 RRHLSEFVRY--RYHVEDIPVQKADIAFIKDLEDYFAKEKGFKLNTS--AGYLTMLASLL 197

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           K L KR I    + +   +++     PR +  ++   +       + +E +  +  +  +
Sbjct: 198 KDLHKRHIIDTYSFIG-HSIRWDVGTPRYITREEVSRI----AALSDNELQGYEQVSRDM 252

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDL 216
                  GL  ++   LT ++I+ +     I+    K   I  +PLLP     I  Y  +
Sbjct: 253 FLFSCYTGLSYTDVYHLTAEHIIHESDMDWIRKPRVKTGNICYIPLLPEAFAIIERYKGI 312

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LS 275
                           I G          +++++ R   +    T H  RH+FA+ + LS
Sbjct: 313 HTRAFRHEPPKGYLLPIPGC----DTVNIHLKKIARLCDIKKILTFHMARHTFASQMTLS 368

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G  + S+  +LGH ++ TTQ+Y   + +     + +I
Sbjct: 369 EGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKI 406


>gi|107100187|ref|ZP_01364105.1| hypothetical protein PaerPA_01001210 [Pseudomonas aeruginosa PACS2]
          Length = 328

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 63/317 (19%), Positives = 117/317 (36%), Gaps = 32/317 (10%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ME   + E  + +   E  NW    +  R LS+L    YE   +            ++  
Sbjct: 31  MEAQQI-EANARQKCSENPNWTIKPKDRRRLSELVELWYELHGQTLANGKRCVAILRLIA 89

Query: 61  QTIRQ-----LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNIL 114
           + +       L   ++    S +  + +  +     L  +KS    L++      E+ + 
Sbjct: 90  KDLGDPVAVSLEPAKVACVRSLQVAKGMSGKYANNRLGYLKSMYNELRQLGTIDYENPVG 149

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            MR LK        L + Q   L+  +   T+            +  +    G R  EA 
Sbjct: 150 RMRPLKLQEKPLSYLTKHQVSELLAALDARTTSPHP------KMVARICLATGARWGEAQ 203

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +LT  + +   + +    K  ++R VP+   + K I +++                    
Sbjct: 204 ALTL-DRLKGNTVIFANTKSKRVRSVPISEGLAKEIRQHW------------------QT 244

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
             P    +    I  L   + LP    +H LRH+FA+H + NGG + ++Q ILGH  LS 
Sbjct: 245 HGPFTNCLGVFRIVLLSTSIKLPRGQASHVLRHTFASHFIMNGGHIVTLQHILGHASLSM 304

Query: 295 TQIYTNVNSKNGGDWMM 311
           T  Y +++  +  + + 
Sbjct: 305 TMRYAHLSHDHLSEALR 321


>gi|29830251|ref|NP_824885.1| phage integrase [Streptomyces avermitilis MA-4680]
 gi|29607362|dbj|BAC71420.1| putative tyrosine-family recombinase/integrase [Streptomyces
           avermitilis MA-4680]
          Length = 393

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 66/334 (19%), Positives = 122/334 (36%), Gaps = 45/334 (13%)

Query: 11  SFELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           S +L +    WL   +E  R LS  T   YE   R +L+ L       +  + +  LS  
Sbjct: 69  SAKLSEWLPYWLKHYVEPRRKLS--TYDKYEVQVRLYLVPL-------LGTRRLESLSVA 119

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++R FI+ R        + K S   +++ L    + ++ T +    +   +      R  
Sbjct: 120 DVRRFIT-RVQNAHTAATAKESHRVLRTALTAAVREELITRNVASLVEPPRVKQREIRPW 178

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           + ++ L+ ++                  A   L    GLR  E   L   ++  D   + 
Sbjct: 179 SLEETLSFLEAARSDPL----------YAAFVLAIAMGLRRGELGGLRWSDVDLDNRVVH 228

Query: 190 IQGKGDKIRIVPL-------------LPSVRKAILEYYDLCPFDLNLNIQLP------LF 230
           ++ +  + R                 +P++  A L ++ L   +      +       +F
Sbjct: 229 VRQQTQRRRGTLYDDDPKSRRIRVVPMPALCIAPLRWHRLRQRETFARTGVAWCEAGYVF 288

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
               G+P+ P    R   ++    GL +    H  RH  AT L + G   R I  ILGH 
Sbjct: 289 ATRNGRPVEPRNVYRSFTRVAADAGLRV-VRLHDARHGCATLLTAAGVAPRVIMEILGHS 347

Query: 291 RLSTTQ-IYTNV---NSKNGGDWMMEIYDQTHPS 320
           ++S T  +YT+V     +     M  +  +  P+
Sbjct: 348 QISITMDVYTHVVHDTQREAISHMDRLLKRRLPT 381


>gi|313900411|ref|ZP_07833904.1| phage integrase, N-terminal SAM domain protein [Clostridium sp.
           HGF2]
 gi|312954473|gb|EFR36148.1| phage integrase, N-terminal SAM domain protein [Clostridium sp.
           HGF2]
          Length = 282

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 60/302 (19%), Positives = 123/302 (40%), Gaps = 31/302 (10%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E  ++   +  +L IE   S LT+Q Y  D  +   +L+  +E+ +T Q I +     ++
Sbjct: 5   EAFEQIDIFRIHL-IEEEKSTLTVQKYIRDITRLFAYLS--SEKTLTKQCIIKYKEELMK 61

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           ++            S+   L  I  F  ++ +           ++ LK        + ++
Sbjct: 62  SY---------TSVSINSMLVAINCFFTFINQ-------PGYRVKLLKIQKR--TCIEKE 103

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + LT  D   L  + +    +     +L  +   G+R+SE   +T + +   ++T++ +G
Sbjct: 104 RELTKKDYARLLKAAQDTHNERM-FLLLQTICATGIRVSEHRFITVEAVKSRKATVQNKG 162

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K   +R +     +RK +L Y               +F    G+PL+     + +++L  
Sbjct: 163 K---LRYIFFPSRLRKQLLAYCKRKKI-----TSGSVFVTNSGRPLDRSNIWKAMKKLCL 214

Query: 253 YLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +  +       H LRH FA    S   D+  +  ILGH  + TT++YT  + +     + 
Sbjct: 215 HANVSSNKVFPHNLRHLFAFTFYSMEKDVVRLADILGHSSIETTRVYTMTSFQEYEKTLS 274

Query: 312 EI 313
            +
Sbjct: 275 RM 276


>gi|320193595|gb|EFW68230.1| type 1 fimbriae regulatory protein FimE [Escherichia coli
           WV_060327]
          Length = 198

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 80/200 (40%), Gaps = 8/200 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R L  K+   ++  V    +       AR+  ++ L Y  G+RISE L L  Q++  ++ 
Sbjct: 5   RYLTGKEVQAMMQAVCYGAT------GARDYCLILLAYRHGMRISELLDLHYQDLDLNEG 58

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            + I+  K     + PL    R+A+  +          +    +F   RG  L+     R
Sbjct: 59  RINIRRLKNGFSTVHPLRFDEREAVERWTQERANWKGADRTDAIFISRRGSRLSRQQAYR 118

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            IR      G    T  H LRH+    L   G D R IQ  LGH  +  T  YT  ++  
Sbjct: 119 IIRDAGIEAGTVTQTHPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYT-ASNAA 177

Query: 306 GGDWMMEIYDQTHPSITQKD 325
               + E  +  H  + +++
Sbjct: 178 RFAGLWERNNLIHEKLKREE 197


>gi|167768479|ref|ZP_02440532.1| hypothetical protein CLOSS21_03038 [Clostridium sp. SS2/1]
 gi|167710003|gb|EDS20582.1| hypothetical protein CLOSS21_03038 [Clostridium sp. SS2/1]
          Length = 266

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 60/256 (23%), Positives = 102/256 (39%), Gaps = 18/256 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +LQ L  +R +S  T+ SY+   R +L +L        T  +I       ++ F      
Sbjct: 18  FLQRLMQQRKVSYHTVCSYKDAFRLYLRYLEDVHGISATKVSINHFDLEYLQCFCKYLEE 77

Query: 81  -QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +K    ++   ++ IKSF++Y+ +     E + ++ R L         L     +T   
Sbjct: 78  KRKNKPVTINNRMAAIKSFMQYVAET--APEYSAISKRALMLPAQ-KHELPVMSFITKEF 134

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----DQSTLRIQGKGD 195
           N L+       +I AR+  +L L+Y  G+R+SE L +   +I      + +++ I GKG 
Sbjct: 135 NALIQVCDTNTFIGARDKLMLLLMYNTGVRVSELLEIKVSDIHGADSVNHASVIIHGKGR 194

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R VPL  +  K I +Y      +        LF    G  L     +  I +L     
Sbjct: 195 KQREVPLWKTTVKYINKYLKTYTAE----CTDYLFINKNGDELTRSGVRTRINKLVSQAT 250

Query: 256 L------PLSTTAHTL 265
                    + T HT 
Sbjct: 251 AQVPSLREKTVTLHTF 266


>gi|57234334|ref|YP_181609.1| phage integrase family site specific recombinase [Dehalococcoides
           ethenogenes 195]
 gi|57224782|gb|AAW39839.1| site-specific recombinase, phage integrase family [Dehalococcoides
           ethenogenes 195]
          Length = 435

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 103/291 (35%), Gaps = 40/291 (13%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-------IGDRSLKRSL 92
           +     +   +  + E  +    + +L+   I+A+ +++  +        +  RS+    
Sbjct: 84  QRTFESYYQNIIGHIEPALGKVILTELTPQIIQAYYARQLEKGRADGKGGLSARSVLYQH 143

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             I   LK   K  +   +    +   +   +     ++ +   L+D           + 
Sbjct: 144 RIISKCLKQATKLGLIMRNPADAVEPPRPRKTAISVPDKDELPRLLDA----------FE 193

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDK 196
                    LL  CG+R  EAL+L  ++I   Q T++I                      
Sbjct: 194 TTPYYVFYCLLLYCGMRRGEALALRWKDIDLKQDTIQIAETAFTLRSGEYVIKEPKTPHS 253

Query: 197 IRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            R + + P+++  +LEY            + L +   +F    G+PLNP        +  
Sbjct: 254 RRCIDIPPTMKLLLLEYKADQTAYYAKLGVELGLHDFVFTRPNGEPLNPNTVTHTFLKAV 313

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           R  G       H LRH  AT +L  G   + +   LGH  ++ T   Y++V
Sbjct: 314 RKAGFDK-LRLHDLRHLHATLMLQAGIHPKIVSERLGHASINITLDTYSHV 363


>gi|91213958|ref|YP_543944.1| tyrosine recombinase [Escherichia coli UTI89]
 gi|110644754|ref|YP_672484.1| tyrosine recombinase [Escherichia coli 536]
 gi|117626621|ref|YP_859944.1| tyrosine recombinase [Escherichia coli APEC O1]
 gi|191170750|ref|ZP_03032302.1| type 1 fimbriae regulatory protein FimE [Escherichia coli F11]
 gi|215489637|ref|YP_002332068.1| tyrosine recombinase [Escherichia coli O127:H6 str. E2348/69]
 gi|218692718|ref|YP_002400930.1| tyrosine recombinase [Escherichia coli ED1a]
 gi|91075532|gb|ABE10413.1| type 1 fimbriae regulatory protein FimE [Escherichia coli UTI89]
 gi|110346346|gb|ABG72583.1| type 1 fimbriae regulatory protein FimE [Escherichia coli 536]
 gi|115515745|gb|ABJ03820.1| type 1 fimbriae regulatory protein FimE [Escherichia coli APEC O1]
 gi|190908974|gb|EDV68561.1| type 1 fimbriae regulatory protein FimE [Escherichia coli F11]
 gi|215267709|emb|CAS12168.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218430282|emb|CAV18156.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli ED1a]
 gi|222036049|emb|CAP78794.1| Type 1 fimbriae regulatory protein fimE [Escherichia coli LF82]
 gi|294490349|gb|ADE89105.1| type 1 fimbriae regulatory protein FimE [Escherichia coli IHE3034]
 gi|307629471|gb|ADN73775.1| tyrosine recombinase [Escherichia coli UM146]
 gi|312948932|gb|ADR29759.1| tyrosine recombinase [Escherichia coli O83:H1 str. NRG 857C]
          Length = 198

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 70/174 (40%), Gaps = 7/174 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R L  K+   ++  V    +       AR+  ++ L Y  G+RISE L L  Q++  ++ 
Sbjct: 5   RYLTGKEVQAMMQAVCYGAT------GARDYCLILLAYRHGMRISELLDLHYQDLDLNEG 58

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            + I+  K     + PL    R+A+  +          +    +F   RG  L+     R
Sbjct: 59  RINIRRLKNGFSTVHPLRFDEREAVERWTQERANWKGADRTDAIFISRRGSRLSRQQAYR 118

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            IR      G    T  H LRH+    L   G D R IQ  LGH  +  T  YT
Sbjct: 119 IIRDAGIEAGTVTQTHPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYT 172


>gi|193065311|ref|ZP_03046383.1| integrase [Escherichia coli E22]
 gi|213615968|ref|ZP_03371794.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
 gi|192927105|gb|EDV81727.1| integrase [Escherichia coli E22]
          Length = 312

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 103/257 (40%), Gaps = 29/257 (11%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNIL 114
           E +    + +L+ T +      R  Q I   ++ R +  + +    L        ++ + 
Sbjct: 77  EAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAMFTALISSGHFLNDNPVQ 136

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            ++ +K +      L++ + + L+D  L     E           + +L   G R  E  
Sbjct: 137 GLKGMKVNEREMGYLSKSECVQLLDA-LAENPDE--------RLAVEILLSTGARWGEVA 187

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +L  + ++  + T   + K  K R VP+  S+ + I                  +F    
Sbjct: 188 ALEQRRVLHCRITFS-KTKNSKNRTVPISESLFEKI-----------KKRGGKLVFPT-- 233

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              L+  + +  I+ +     +P     H LRH+FA+H + NGG++ ++Q ILGH ++ T
Sbjct: 234 ---LDYSLVRDVIKTVA--PDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQT 288

Query: 295 TQIYTNVNSKNGGDWMM 311
           T IY ++      D + 
Sbjct: 289 TMIYAHLAPDYLQDAVR 305


>gi|256838475|ref|ZP_05543985.1| integrase [Parabacteroides sp. D13]
 gi|256739394|gb|EEU52718.1| integrase [Parabacteroides sp. D13]
          Length = 419

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 59/292 (20%), Positives = 111/292 (38%), Gaps = 29/292 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG-DRSLKR 90
           +K TL  Y+   +    FL      ++    +++L+   I  F    RT K     ++  
Sbjct: 138 AKGTLLKYKTVYKHLQEFLTIRY--RVKDIALKELTPAFISDFEMFLRTDKYCCTNTVWL 195

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +  +++ +      +  T         +KK  +    L +++   L+D  L +   E  
Sbjct: 196 YVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKEEIRLLMDGRLKNAKQE-- 252

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRI-QGKGDKIRIVPLLPSV 206
                   +       GL  ++  +LT +N     D+   + I + K   +  + LL   
Sbjct: 253 ----LYRDLYLFCAFTGLSFADMRNLTEENIHTYFDEHEWININRQKTGVVSNIRLLDIA 308

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           ++ I +Y  LC                R  P+ +       IR + +  G+    T H  
Sbjct: 309 KRIIDKYRGLCG-------------NGRIFPVPHYNTCLAGIRSVAKRCGITKHITWHQS 355

Query: 266 RHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           RH+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +     M  +  +
Sbjct: 356 RHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMENLAAR 407


>gi|254496761|ref|ZP_05109618.1| phage integrase family integrase/recombinase [Legionella
           drancourtii LLAP12]
 gi|254354018|gb|EET12696.1| phage integrase family integrase/recombinase [Legionella
           drancourtii LLAP12]
          Length = 166

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 51/159 (32%), Positives = 72/159 (45%), Gaps = 22/159 (13%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI------RIVPLLPSVRKAI 210
             I+++L   GLR+SE  SLT Q+I+  Q +LRI GKG         R+VP+   VR  +
Sbjct: 19  KLIIWILIDTGLRVSELCSLTAQDILWQQKSLRITGKGGPYGKKSKKRVVPMSNRVRALL 78

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
             YY +                    P+     Q+ ++ +     +    T H LRH+FA
Sbjct: 79  EHYYAINER----------------FPVGARQVQKIVKGIANKAKISKQVTPHILRHTFA 122

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           T  L  G  L S+Q  LGH RL TT IY N    +  + 
Sbjct: 123 TLALQKGISLASVQKALGHDRLETTAIYLNFTDAHVIEE 161


>gi|312960859|ref|ZP_07775364.1| integrase/recombinase XerD [Pseudomonas fluorescens WH6]
 gi|311284517|gb|EFQ63093.1| integrase/recombinase XerD [Pseudomonas fluorescens WH6]
          Length = 304

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 56/275 (20%), Positives = 112/275 (40%), Gaps = 15/275 (5%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR--QLSYTEIRAFISKRRTQKIGDRSLK 89
           S+LT++    D    L F      E I ++ I    L    + A ++  R       +  
Sbjct: 20  SQLTMRYVLQDAADRLGF------EDINLEDIDWHLLQPEHVIALVAALREDGYAPNTSS 73

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             ++ ++  +    +  + ++ ++L MR +K ++            TL+  ++   + + 
Sbjct: 74  LYVNAVRGVMNEAWRMSLISQEHLLKMRTVKAASGTRLGQGRNLRRTLIREMMEACAADP 133

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           +    R++A++ +LYG G+R SE+++L    I  ++ +LR+ GKG+K  +          
Sbjct: 134 RPQGLRDAAVIGILYGSGMRKSESVNLDLAQIDFEERSLRVIGKGNKELVKYAPDWAFAK 193

Query: 210 ILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNP-GVFQRYIRQLRRYLG--LPLSTTAH 263
           +  +       L    Q   F   R  RG  +    + +  I  + R  G  + +    H
Sbjct: 194 LQAWLAFRREQLKEGEQDDSFLFNRIRRGSHITRERITKHAIYYIARQRGEQVGVKIMPH 253

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             R SF T ++    DL   Q +  H  + TT  Y
Sbjct: 254 DFRRSFITRVIEE-HDLSIAQKLAHHTNIQTTASY 287


>gi|331681295|ref|ZP_08381932.1| type 1 fimbriae regulatory protein FimE [Escherichia coli H299]
 gi|331081516|gb|EGI52677.1| type 1 fimbriae regulatory protein FimE [Escherichia coli H299]
          Length = 198

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 70/174 (40%), Gaps = 7/174 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R L  K+   ++  V    +       AR+  ++ L Y  G+RISE L L  Q++  ++ 
Sbjct: 5   RYLTGKEVQAMMQAVCYGAT------GARDYCLILLAYRHGMRISELLDLHYQDLDLNEG 58

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            + I+  K     + PL    R+A+  +          +    +F   RG  L+     R
Sbjct: 59  RINIRRLKNGFSTVHPLRFDEREAVERWTQERANWKGADRTDAIFISRRGSRLSRQQAYR 118

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            IR      G    T  H LRH+    L   G D R IQ  LGH  +  T  YT
Sbjct: 119 IIRDAGIEAGTVTQTHPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYT 172


>gi|157147899|ref|YP_001455218.1| tyrosine recombinase [Citrobacter koseri ATCC BAA-895]
 gi|157085104|gb|ABV14782.1| hypothetical protein CKO_03706 [Citrobacter koseri ATCC BAA-895]
          Length = 212

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 44/174 (25%), Positives = 70/174 (40%), Gaps = 7/174 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R L  ++   ++  V             R+  ++ L +  G+RISE L+L  ++    + 
Sbjct: 5   RFLTAREVQAMMKAV------RHGQTGERDYCLILLAFRHGMRISELLNLHYRDFDLYEG 58

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            + I+  K     I PL+P   +AI  +  +            +F   +G  L+     R
Sbjct: 59  RINIRRLKNGFSTIHPLMPDECEAIECWSRVRASWKGAQKINAVFISRKGSQLSRQQAYR 118

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            IR   +  G   +T  H LRH+    L   G D R IQ  LGH  +  T  YT
Sbjct: 119 IIRSAGQKAGTSTTTHPHMLRHACGYELAERGTDTRLIQDYLGHRNIRHTVRYT 172


>gi|146301413|ref|YP_001196004.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146155831|gb|ABQ06685.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 305

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 59/276 (21%), Positives = 112/276 (40%), Gaps = 31/276 (11%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-------IGDRSLKRS 91
           Y+    +FLI+L     E+  I  I+ ++  E   ++    ++        + ++++K  
Sbjct: 34  YKNIITEFLIWL-----EQAGISRIQNVTSKESVKYLEYLSSRPKKRGNGILAEKTIKLH 88

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L  +    +         ++    + ++      PR +   + + LV             
Sbjct: 89  LF-VHGLFQVYLLENKEIQN-TYYIPSITGGTQKPRNILTIEEIRLVYEH---------A 137

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAI 210
            +    A+L + YGCGLR SE  SL  +++   +  L ++ GKG+K R VP+  +V   +
Sbjct: 138 ENEMEKALLSIAYGCGLRRSEIASLDLKDVNLIKGMLVVRQGKGNKRREVPMSDTVLDYL 197

Query: 211 LEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG----LPLSTTAH 263
            +Y      +        +   F   RG+          + ++    G    +    T H
Sbjct: 198 TKYVRDERPERLTGRNQNEEAFFINSRGRRSTGENLNEILNKMIEQTGKFELVQKEITLH 257

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            LRHS A HL  N   +  I++ LGH +++TT IY 
Sbjct: 258 CLRHSIAYHLAENNAGIDFIRTFLGHTQINTTYIYA 293


>gi|218513225|ref|ZP_03510065.1| site-specific tyrosine recombinase XerD [Rhizobium etli 8C-3]
          Length = 190

 Score =  111 bits (279), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 6/146 (4%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             +++L+ +  ERG +  TLQSYE D      FL   +        + + +  ++ A+++
Sbjct: 8   HVESFLEMMSAERGAAANTLQSYERDLDDIRSFLNGRSIR------LTEAASADLSAYLA 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               Q     S  R L+ ++ F K+L    I T+     +   KK   LP+ +  ++   
Sbjct: 62  SLARQGFKPSSQARRLAAMRQFYKFLYAEGIRTDDPTGVLDAPKKGRPLPKTMGVEEVSR 121

Query: 137 LVDNVLLHTSHETKWIDARNSAILYL 162
           L+                R   +   
Sbjct: 122 LLSQAQAEADDPAPGQLQRLRMLALF 147


>gi|85706622|ref|ZP_01037715.1| probable site-specific integrase/recombinase [Roseovarius sp. 217]
 gi|85669034|gb|EAQ23902.1| probable site-specific integrase/recombinase [Roseovarius sp. 217]
          Length = 398

 Score =  111 bits (279), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 67/305 (21%), Positives = 117/305 (38%), Gaps = 25/305 (8%)

Query: 6   LPEIVSFELL--KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           +P++    L+       + + L   RGLS+ T+  +     + L  L             
Sbjct: 96  IPKVAPAALVVDPSVARFGEWLRRHRGLSERTIARHVRMVSRLLPALGV---------DP 146

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
                + +RA I    T+      +K     ++ +L++L  R        L+       +
Sbjct: 147 DAYDASRVRAVILDEGTR-CSAAYVKTMAMALRGYLRFLATRGECR--PGLDHAVPPTPD 203

Query: 124 ----SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
               +LPR L  +    L++   L  SH       R+ AIL LL   GLR  +  ++   
Sbjct: 204 WRLSALPRYLLPEDVTRLIEGCDLSLSH-----GIRDRAILLLLSRLGLRAHDIWAMEIN 258

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           ++     T+R++GK  +   +PL      A+L Y +     ++                +
Sbjct: 259 HVDWAAGTVRVRGKRRREVRLPLPQEAGDALLAYLEDARPLVDERRIFLRSAAPYVPFAS 318

Query: 240 PGVFQRYIRQLRRYLGLPLSTT--AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
             V    +R   R  G+  + +  AH LRHS AT +L  G  L +I ++L H    TT  
Sbjct: 319 SNVVSTIVRSALRRAGISDAPSQGAHLLRHSAATAMLRAGATLDAIGAVLRHQSPDTTAH 378

Query: 298 YTNVN 302
           Y  V+
Sbjct: 379 YAKVD 383



 Score = 37.3 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 65/201 (32%), Gaps = 19/201 (9%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + + EL +    +  +L    G + LT++ Y    R    +LA      ++  TI  L  
Sbjct: 1   MEAGELAEPIVAYAAHLSGL-GYTALTIKGYTDSARHLGAWLA------LSGLTISALDE 53

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK----ITTESNILNMRNLKKSN- 123
             +  F   +        S + S   ++   ++         I   +    + +   +  
Sbjct: 54  HALERFARHKCRCGGNRSSDRLSSKYVRRVHRFTYYLGDCGIIPKVAPAALVVDPSVARF 113

Query: 124 ----SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA-ILYLLYGCGLRISEALSLTP 178
                  R L+E+     V  V           DA +++ +  ++   G R S A   T 
Sbjct: 114 GEWLRRHRGLSERTIARHVRMVSRLLPALGVDPDAYDASRVRAVILDEGTRCSAAYVKTM 173

Query: 179 QNIMDDQSTLRIQGKGDKIRI 199
              +  +  LR      + R 
Sbjct: 174 AMAL--RGYLRFLATRGECRP 192


>gi|324999081|ref|ZP_08120193.1| integrase family protein [Pseudonocardia sp. P1]
          Length = 385

 Score =  111 bits (279), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 63/314 (20%), Positives = 113/314 (35%), Gaps = 43/314 (13%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            WL ++++   +   T   YE + R  L         ++  + +  LS  ++R  +   +
Sbjct: 75  EWLDHIKL--HVRPQTWAGYESNVRNHLT-------PRLGRKKLTALSVRDVRLMVDDLK 125

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNEKQALTLV 138
                 R ++   S ++  L++    ++ T +   ++R  + S  SL   L  ++A   +
Sbjct: 126 ATGTSPRMVQWIHSTLRVALQHAVAEELVTRNVARSVRVAQPSRDSLTEPLTAEEAKEFL 185

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------- 191
             V  H       +      +L L    GLR SE   L   ++   + T++IQ       
Sbjct: 186 RAVKAH------RLHGLWVTVLVL----GLRRSEVCGLHWDDVDLGRGTVKIQRGLQRTG 235

Query: 192 --------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLN------LNIQLPLFRGIRGKP 237
                         R VPL   V  A+ E+ +    +              +F    G  
Sbjct: 236 GRLQELPTKTRRSRRTVPLPAMVVDALREHQERQRAERTAAVRGTWTDTPYVFTSSVGTS 295

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ- 296
           L P    R    L    G       H LRH+  + LLS G   R +  I+GH  +  T  
Sbjct: 296 LEPRTLTRTFHALLERHGF-RKVRLHDLRHTCVSLLLSLGVHPRIVMEIVGHSAIEMTMN 354

Query: 297 IYTNVNSKNGGDWM 310
           +Y +V   +  D +
Sbjct: 355 VYGHVTLDSQRDAL 368


>gi|57234825|ref|YP_181071.1| phage integrase family site specific recombinase [Dehalococcoides
           ethenogenes 195]
 gi|57225273|gb|AAW40330.1| site-specific recombinase, phage integrase family [Dehalococcoides
           ethenogenes 195]
          Length = 336

 Score =  111 bits (279), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 61/279 (21%), Positives = 100/279 (35%), Gaps = 43/279 (15%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSF 98
           Y+    +F  FL                S      F+     +     ++ R    I+ F
Sbjct: 39  YKALLDKFQAFLGGMPP-----------SQALALKFLGLYHHR--AQATIFRYTGIIRGF 85

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           + +     +           +KK   LP  +       LVD   +   H  K   AR+  
Sbjct: 86  MDW-YGEGLDV--------KVKKPKHLPEYVEPADIEKLVDA--ITCKHNHKDTIARDEM 134

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLC 217
           ++      GLR SE  +L   +I  ++ T+ ++ GKG K R VP+   +   +       
Sbjct: 135 LIRFAQMTGLRRSELANLKVSDIQLEKRTVFVRQGKGMKDRAVPIPLGLISKL------T 188

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            F  +      LF       L        +    +  G+      H LRHS+A  LL  G
Sbjct: 189 SFLAHKQPSDSLFN------LTSRSITDKLSTWSKKAGV--KIHPHQLRHSYAEQLLEKG 240

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             L S+Q++LGH  L TT +Y  +      + + E  D+
Sbjct: 241 AALTSVQALLGHESLQTTSVYLGI----RPNALREAVDK 275


>gi|304320725|ref|YP_003854368.1| Phage integrase [Parvularcula bermudensis HTCC2503]
 gi|303299627|gb|ADM09226.1| Phage integrase [Parvularcula bermudensis HTCC2503]
          Length = 421

 Score =  111 bits (279), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 64/291 (21%), Positives = 106/291 (36%), Gaps = 34/291 (11%)

Query: 41  CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR-----------AFISKRRTQKI-----G 84
            + R  +  +  +    I  + +R+L+  ++            A + K +   +     G
Sbjct: 135 RNIRNEMSRMDAHLIPAIGNKKLRELTRRDVELLRDDITAGRTAVVQKTKKHGVRRATGG 194

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             + KR++   KS L Y+K      ++   N+R         R L+  +A  L   +   
Sbjct: 195 TGTAKRTMVSFKSVLAYMKDIGFVDQNVAANLRLAPDGKKE-RYLSVAEAHRLGKCLDEW 253

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
              + +        I+ LL   G R  E   L    I  D+S  R +       I P+ P
Sbjct: 254 EQMDRRMTGI---TIIRLLLMTGARTKEIEELKWSEIDFDRSFFRFEETKSGRSIRPISP 310

Query: 205 SVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            V   +  L         LN     P         L           +R   GLP     
Sbjct: 311 QVLDILKGLPRLHPTWVFLNNAGTGPYCGTQAVWRL-----------VREEAGLP-DVRK 358

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           H LRHSFA+  L+NG  L  I ++LGH R  TTQ Y +++ ++  +    +
Sbjct: 359 HDLRHSFASFALANGLSLPVIGTLLGHSRPETTQRYAHLSDRHAMEAAKSV 409


>gi|325679180|ref|ZP_08158771.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324109109|gb|EGC03334.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 361

 Score =  111 bits (279), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 48/304 (15%), Positives = 105/304 (34%), Gaps = 32/304 (10%)

Query: 22  LQNLEIERGL-SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           L+   + +    + T  +Y     +       +            +    +  F+ K+  
Sbjct: 68  LEWFSVSKNRIKESTAANYRMKIEK-------HIIPPFGGMNAALIKAKAVYEFMEKKLH 120

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +  R +   +  +KS  +Y   R+    + I  +   KK+      +++ +   LV  
Sbjct: 121 DGLSARYISDIMVVLKSIFRYAA-REYRINNVIDGIIMPKKAKPEITIMSKDEQKRLV-- 177

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
             ++ +  T  +       + L    G+RI E  +L  +NI  ++  L ++    +I+  
Sbjct: 178 TYINDNRSTSTLG------VALSLYTGMRIGEVCALRWENIDTEKRVLTVRHTIQRIQCF 231

Query: 201 PLLPSVRKAILE-------------YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
                 +  I E                +                   KP+ P   Q   
Sbjct: 232 EGDNKTKVIIAEPKSQSSRREIPIPDCLIPMLKELKGKNSAFILTGTEKPIEPRTMQYRF 291

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNG 306
           +++    G+      H LRH FA+  +  G D++++  ILGH  +  T   Y + + ++ 
Sbjct: 292 KRILENAGV-REYNYHVLRHCFASGAIELGFDVKTLSEILGHSSVQITLDRYIHTSMEHK 350

Query: 307 GDWM 310
            + M
Sbjct: 351 RNCM 354


>gi|291335907|gb|ADD95502.1| phage related integrase [uncultured phage MedDCM-OCT-S08-C41]
          Length = 282

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 98/253 (38%), Gaps = 22/253 (8%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           + ++    +  ++ +   +     ++ R +S + + L +  +RK+  + ++      +K 
Sbjct: 47  VSKIDQAFMDLYVHELEKEGKSPGTINRCISSVSTVLHHCARRKLIAKPDVFE----RKK 102

Query: 123 NSLPR--ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
            + PR    +  Q   +V       +  T +       I+      G+R  E L L   +
Sbjct: 103 EAPPREFFYSIDQLGEMV------KAANTIFRMPELGDIILFAVHTGMRQGEVLRLVTSD 156

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I  + + + +    +       + S  K +LE       D ++  +            + 
Sbjct: 157 IDFNFNVIHVHKTKNNTTRTVPINSQIKPMLERRVADAIDDHVFWEYQ----------DK 206

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               R +R++  Y+GL  +   HTLRH+F T L   G  L  +  I+GH  + TT  Y  
Sbjct: 207 DTLLRQLRKVTAYIGLDENYLFHTLRHTFCTILAGKGTPLHQVAEIMGHNDIKTTLRYAK 266

Query: 301 VNSKNGGDWMMEI 313
           V+++     +  +
Sbjct: 267 VSAEAKQTAIHSM 279


>gi|75812424|ref|YP_320043.1| Phage integrase [Anabaena variabilis ATCC 29413]
 gi|75705180|gb|ABA24854.1| Phage integrase [Anabaena variabilis ATCC 29413]
          Length = 343

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 57/296 (19%), Positives = 110/296 (37%), Gaps = 33/296 (11%)

Query: 20  NWLQNLEIER--GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            W++ LE  R   L+  + + YE + ++FL +   +  E         L    +  +   
Sbjct: 44  RWIKVLEFLRSTNLAPNSRKLYERELKRFLGWTQLHYHE---------LRPRHLGLYKEY 94

Query: 78  RRTQ-------KIGDRSLKRSLSGIKSFLKYLKKR--KITTESNILNMRNLKKSNSLPRA 128
            R +        +   S+   ++ +KSF K++      I   +  L ++  K      ++
Sbjct: 95  LRDEVKTDSGKPLSKSSINAGVAALKSFFKWMCYTYPDIIATNPTLGIKLEKVPLPPAQS 154

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L ++Q   +   + L    + +     ++A++++L   GLR  E + L   +       L
Sbjct: 155 LTDEQMERVWSALELLGETKQR-----DTALVHIL-SHGLRAGEIVQLNVGSFDGKLLFL 208

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRG----KPLNPGVF 243
               K ++ R+VPL    R  +  Y          LN   PL            L+    
Sbjct: 209 -PDTKTNEPRLVPLRKESRDVLEAYLRSRREQGEELNSLTPLMISHHASYKGDRLSYHGI 267

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
              + ++    G+      H  RH++AT LL  G D    + + GH      + YT
Sbjct: 268 YFAVEKIGELAGIE-DLHPHQFRHTYATELLLLGVDPSHARKLTGHQSEKAFRRYT 322


>gi|260844019|ref|YP_003221797.1| putative integrase [Escherichia coli O103:H2 str. 12009]
 gi|257759166|dbj|BAI30663.1| putative integrase [Escherichia coli O103:H2 str. 12009]
          Length = 312

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 103/257 (40%), Gaps = 29/257 (11%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNIL 114
           E +    + +L+ T +      R  Q I   ++ R +  + +    L        ++ + 
Sbjct: 77  EAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAMFTALISSGHFLNDNPVQ 136

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            ++ +K +      L++ + + L+D  L     E           + +L   G R  E  
Sbjct: 137 GLKGMKVNEREMGYLSKSECVQLLDA-LAENPDE--------RLAVEILLSTGARWGEVA 187

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +L  + ++  + T   + K  K R VP+  S+ + I                  +F    
Sbjct: 188 ALEQRRVLHCRITFS-KTKNSKNRTVPITESLFEKI-----------KKRGGKLVFPT-- 233

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              L+  + +  I+ +     +P     H LRH+FA+H + NGG++ ++Q ILGH ++ T
Sbjct: 234 ---LDYSLVRDVIKTVA--PDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQT 288

Query: 295 TQIYTNVNSKNGGDWMM 311
           T IY ++      D + 
Sbjct: 289 TMIYAHLAPDYLQDAVR 305


>gi|304560203|gb|ADM42867.1| hypothetical protein ETAF_2763 [Edwardsiella tarda FL6-60]
          Length = 209

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/174 (25%), Positives = 66/174 (37%), Gaps = 7/174 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L + +   L+            +   RN  ++Y+ +  GLR+SE LSL   +I  D  
Sbjct: 5   KHLTQSEVERLLQQ------ARYSYFAERNYCMIYMGFIHGLRVSELLSLRLSDIDLDDQ 58

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
           ++ I   K       PLLP   + I  +               LF    G  L    F +
Sbjct: 59  SIYIHRLKNGLSTNHPLLPEEVEVIRVWLHARRKIRYAADSEWLFLSRLGTRLTRQQFYK 118

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            I    +   + + +  H LRH+    L   G D R IQ  LGH  +  T  YT
Sbjct: 119 IITDYGKKAEISICSHPHMLRHACGYALADRGIDTRLIQDYLGHRNIRHTVCYT 172


>gi|323978150|gb|EGB73236.1| phage integrase [Escherichia coli TW10509]
          Length = 317

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 103/257 (40%), Gaps = 29/257 (11%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNIL 114
           E +    + +L+ T +      R  Q I   ++ R +  + +    L        ++ I 
Sbjct: 77  EAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAMFTALISSGHFLNDNPIQ 136

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            ++ +K +      L++ + + L+D  L     E           + +L   G R  E  
Sbjct: 137 GLKGMKVNEREMGYLSKSECVQLLDA-LAENPDE--------RLAVEILLSTGARWGEVA 187

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +L  + ++  + T   + K  K R VP+  S+ + I                  +F    
Sbjct: 188 ALEQRRVLHCRITFS-KTKNSKNRTVPISESLFEKI-----------KKRGGKLVFPT-- 233

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              L+  + +  I+ +     +P     H LRH+FA+H + NGG++ ++Q ILGH ++ T
Sbjct: 234 ---LDYSLVRDVIKTVA--PDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQT 288

Query: 295 TQIYTNVNSKNGGDWMM 311
           T IY ++      D + 
Sbjct: 289 TMIYAHLAPDYLQDAVK 305


>gi|194445766|ref|YP_002041997.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194404429|gb|ACF64651.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
          Length = 336

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 62/314 (19%), Positives = 115/314 (36%), Gaps = 48/314 (15%)

Query: 17  ERQNWLQNLEIERGLSKLTLQS---YECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEI 71
           E + WL   +  R LS+L  Q    Y          ++        +      Q++  + 
Sbjct: 47  EEKPWLGEKQDNRRLSELIEQWHDLYGRTLSDADRMMSKLKGICAGMGDPIAAQITSADF 106

Query: 72  RAFISKR----------RTQKIGDRSLK---RSLSGIKSFLKYLKKRKITTESNILNMRN 118
             +   R          R   I  +++    R+LS +  F    K    +  + +  +  
Sbjct: 107 SQYREGRLKGEIPDVNGRLMPIQPQTVNHEQRNLSAV--FGTLKKLGHWSLPNPLAGIPT 164

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            K    +   L  ++  +L+   L  +S ++  I      I  +    G R SEA +L  
Sbjct: 165 FKVDEKMVSFLYPEEIKSLLQ-YLSESSSDSVLI------ITKICLATGARWSEAENLEG 217

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
             +   + T +   K  ++R +P+   +   I                 P  RG    P 
Sbjct: 218 AQVTPYRITYK-NTKNGRVRSIPISKELYDEI-----------------PKKRGRLFTPC 259

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
               F+R + +      LP     H LRH+FA+H + NGG++  ++ ILGH  +  T IY
Sbjct: 260 -RKTFERVVAKAGIE--LPDGQCTHVLRHTFASHFMMNGGNILVLKEILGHSDIKMTMIY 316

Query: 299 TNVNSKNGGDWMME 312
            +    +  D +++
Sbjct: 317 AHFAPTHLEDAVLK 330


>gi|293556237|ref|ZP_06674827.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1039]
 gi|291601656|gb|EFF31918.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1039]
          Length = 378

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 54/318 (16%), Positives = 118/318 (37%), Gaps = 42/318 (13%)

Query: 18  RQNWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
            + +L     E     L   T ++Y    +        +    +  + +  LS   ++ F
Sbjct: 64  VKQYLDFWMEEYVKLNLKYNTYENYRFTIK-------NHINGYLGKKKLTDLSPALLQNF 116

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQ 133
           I+    +    +++  + S +K+ L        +  ++ +L ++  K     P    + +
Sbjct: 117 INAEFKKGYSKKTMTITHSVLKNALNMAVYPWGLIKQNPMLYVKIPKYEER-PTTKKDLK 175

Query: 134 ALTL--VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            ++L   D++L  T     +        L + +  G+R+ E   LT  N+     T+ ++
Sbjct: 176 IISLEDFDHMLEITPEGHPFYIP-----LNIGFYTGMRVGEVCGLTWDNVDFSNGTITVE 230

Query: 192 GKG---------------DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
            +                   R + +  ++   + ++      +     +L +       
Sbjct: 231 KQMVKNGGAWVYGTPKTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCT 290

Query: 237 P-----LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
                 + P V +   R++   L L  +   H+LRH+ AT LL NG  ++ I   LGH R
Sbjct: 291 KEDGELVTPSVVKWNTRRISNALSLSFN--FHSLRHTHATLLLENGAKMKEISERLGHSR 348

Query: 292 LSTTQ-IYTNVNSKNGGD 308
           +S T   Y++V  K   +
Sbjct: 349 ISITMDTYSHVTDKMRNE 366


>gi|257484096|ref|ZP_05638137.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 341

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 62/295 (21%), Positives = 119/295 (40%), Gaps = 18/295 (6%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            ++ K  + +L  L      S+LT+     D    L          I       L    +
Sbjct: 40  PDVNKPLRLYLDRLAPS---SRLTMTYVLQDAADRLGMADV----DIHDIPWHTLQPGHV 92

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRAL 129
            A ++  R       +    ++ I+  +    +  + +   +L +R++K      L +  
Sbjct: 93  TALVATLREDDYAPNTTSLYVNAIRGVMNEAWRHDLISHEQLLKIRSIKPVSGTRLAKGR 152

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           N +   TL+  ++   + + +    R++AI+ +LYG G+R SE+++L    I   + +LR
Sbjct: 153 NIR--RTLIRELMQACAADPRPQGRRDAAIIAILYGSGMRKSESVNLDLSQIDFAERSLR 210

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNP-GVFQR 245
           + GKG+K  I        KA+ ++ +L    L        F   R  RG  +    + + 
Sbjct: 211 VLGKGNKQLIKYAPEWAFKALNDWLELRRSCLQPGQGDDPFLFNRIRRGSHITRDRITKH 270

Query: 246 YIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            I  + +  G  + ++   H  R SF T ++    DL   Q +  H  +STT  Y
Sbjct: 271 AIYFIAKQRGRQVGVNIMPHDFRRSFITRVIEE-FDLSIAQKLAHHTHISTTASY 324


>gi|255012270|ref|ZP_05284396.1| putative bacteriophage integrase [Bacteroides sp. 2_1_7]
          Length = 411

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 54/290 (18%), Positives = 116/290 (40%), Gaps = 22/290 (7%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           +  + +T++ YE   R     +    +++     ++ ++   IRAF    +T+K     +
Sbjct: 130 KDFALVTVRRYESCKRYLAELIKIKYDKE--DLPLKDINGEFIRAFDFYLKTEKECSQNT 187

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           + R +  +K         +   +     ++  +K  +    L   + L ++ N       
Sbjct: 188 VIRYMKCLKKITNLSLANEWINKDPFTGIKFHEKEVNR-EFLTWDE-LQIITNKKFDLPR 245

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQGKGDKIRIVPLLP-- 204
                D     I       GL   +   LT ++I+ D+     I+    K + +  +P  
Sbjct: 246 IDLVRD-----IFIFGCYTGLSFIDIKQLTAEHIVKDREGNFWIRKARQKTKNMCNIPLL 300

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            +  AI+E Y   P     N+ LP+    +           Y++++    G+    + HT
Sbjct: 301 DIPLAIIEKYKDNPKCQKQNVLLPVPCNQKM--------NSYLKEISDLCGIHKEISTHT 352

Query: 265 LRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            RHS+AT   L+NG  + ++  +LGH  ++ T+ Y  V  ++  + M ++
Sbjct: 353 ARHSYATSVCLANGVSIENVAKMLGHSNINMTKRYARVLDQSILNDMQKV 402


>gi|258516839|ref|YP_003193061.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257780544|gb|ACV64438.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 381

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 57/304 (18%), Positives = 108/304 (35%), Gaps = 52/304 (17%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-------- 82
           LS  T + YE   +Q LI         +    + +L   +I+ F+SK             
Sbjct: 77  LSPSTARRYEGIIKQHLI-------PSLGNIPLAKLQPLQIQEFLSKELEGGRQDNKKTV 129

Query: 83  ---IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +   S+      +   L      ++ + +    ++  K        L+E+    L++
Sbjct: 130 GAGLSAASVNYEYRVLHKALNQAVDWQLISRNPADLVKVPKPEKKDMVVLSEQDIARLLN 189

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------- 191
            +           D       +L    G+R+ E L  T ++I  ++  L ++        
Sbjct: 190 EIK----------DNYLYIPTFLAIYTGMRLGEVLGSTWKDIDLNRGILSVRQASCQVKA 239

Query: 192 --------GKGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPL 238
                         R + +  +V K + E+             N      +     G+P+
Sbjct: 240 DDPEFKAPKTAKSKRNIDISQTVVKTLREHKKTQTKWKLVAGSNWQDNNLVCALQDGRPI 299

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-I 297
           NP     Y R++   +GL    + H LRH+ A+ LL  G   + +Q  LGH  ++ T  I
Sbjct: 300 NPPSLSSYFRRVASRIGL--FVSFHALRHTHASLLLKAGIQPKIVQERLGHSTIAVTMDI 357

Query: 298 YTNV 301
           Y++V
Sbjct: 358 YSHV 361


>gi|157368467|ref|YP_001476456.1| integrase family protein [Serratia proteamaculans 568]
 gi|157320231|gb|ABV39328.1| integrase family protein [Serratia proteamaculans 568]
          Length = 191

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 7/179 (3%)

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
             ++ + L   +   ++       + ++     RN+ +L++ +  G R+SE   +   ++
Sbjct: 2   KKNVRKHLTRPEIERML------AAADSIPDPERNTCLLWMCFVHGCRVSELTGMHLADL 55

Query: 182 MDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                +L ++  K     + PL P  RK +  +               LF   +G  L+ 
Sbjct: 56  DIAGDSLYVRRLKNGLSTMQPLHPMERKLLARWLQRRQSYPGAKDYDWLFLSHKGGRLSR 115

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               R ++ L    GL ++   H LRH+    L   G D R IQ  LGH  +  T +YT
Sbjct: 116 SRIYRILKDLGERAGLSIAVHPHMLRHACGYALADKGADTRLIQDYLGHRNIQHTVLYT 174


>gi|323169298|gb|EFZ54974.1| integrase [Shigella sonnei 53G]
          Length = 312

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 103/257 (40%), Gaps = 29/257 (11%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNIL 114
           E +    + +L+ T +      R  Q I   ++ R +  + +    L        ++ + 
Sbjct: 77  EAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAMFTALISSGHFLNDNPVQ 136

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            ++ +K +      L++ + + L+D  L     E           + +L   G R  E  
Sbjct: 137 GLKGMKVNEREMGYLSKSECVQLLDA-LAENPDE--------RLAVEILLSTGARWGEVA 187

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +L  + ++  + T   + K  K R VP+  S+ + I                  +F    
Sbjct: 188 ALEQRRVLHCRITFS-KTKNSKNRTVPISESLFEKI-----------KKRGGKLVFPT-- 233

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              L+  + +  I+ +     +P     H LRH+FA+H + NGG++ ++Q ILGH ++ T
Sbjct: 234 ---LDYSLVRDVIKTVA--PDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQT 288

Query: 295 TQIYTNVNSKNGGDWMM 311
           T IY ++      D + 
Sbjct: 289 TMIYAHLAPDYLQDAVR 305


>gi|266619902|ref|ZP_06112837.1| putative integrase [Clostridium hathewayi DSM 13479]
 gi|323693669|ref|ZP_08107868.1| hypothetical protein HMPREF9475_02731 [Clostridium symbiosum
           WAL-14673]
 gi|288868532|gb|EFD00831.1| putative integrase [Clostridium hathewayi DSM 13479]
 gi|323502283|gb|EGB18146.1| hypothetical protein HMPREF9475_02731 [Clostridium symbiosum
           WAL-14673]
          Length = 278

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 69/303 (22%), Positives = 123/303 (40%), Gaps = 35/303 (11%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E+L+E + +L     E   S  T+Q Y  +   FL FL      K  +   R+       
Sbjct: 7   EILREYRIYL----TEHEKSHATIQKYVRELVWFLSFLQGEEPTKAKVLEYRE------- 55

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
                +  Q    R++   LS I S+L YL             +R LK  +++   +++ 
Sbjct: 56  -----QLQQSHHARTVNAKLSAIHSYLDYLGL-------AACKVRFLKIQHTV--FVDDS 101

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + LT  +   L  + + K        +L +    G+R+SE   LT + +   ++ +R++G
Sbjct: 102 RDLTEAEYHRLLDAAKRKKDSRLYHVMLAIC-TTGIRVSELSFLTVEALHKGKAEIRMKG 160

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K   IR + L   + + +  Y               LF    GKPL+       +++L R
Sbjct: 161 K---IRTILLTKELCRKLNAYAKEKGIRTG-----YLFCTRTGKPLDRSNICHDMKKLCR 212

Query: 253 YLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              + P     H LRH FA    +   +L  +  ILGH  + TT+IY  + ++     + 
Sbjct: 213 AARVNPEKVFPHNLRHLFAKCYYAIKKNLAYLADILGHASVDTTRIYVAMGTREHERTLQ 272

Query: 312 EIY 314
            ++
Sbjct: 273 RMH 275


>gi|189463345|ref|ZP_03012130.1| hypothetical protein BACCOP_04062 [Bacteroides coprocola DSM 17136]
 gi|189429964|gb|EDU98948.1| hypothetical protein BACCOP_04062 [Bacteroides coprocola DSM 17136]
          Length = 418

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 102/306 (33%), Gaps = 27/306 (8%)

Query: 11  SFELLKERQNWLQNL-EIERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQTIRQLSY 68
           + +L + R N+++    ++R     +  S   + R+    L  + + + I    I     
Sbjct: 121 AEQLERSRSNFIEYFDHVQRTRHAHSSDSIIVNWRRVHELLKIFAKSDTILFSQIDLKLV 180

Query: 69  TEIRAFISKRRTQKIGDRSLKR-----SLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
              R FI           ++ +       S  K+ LK        T      ++ +++  
Sbjct: 181 ESFRQFIMNAPQGGTKRGTISQNTASTYFSIFKAGLKQAFIDGYLTIDIAAKVKGIQERE 240

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           S    L  ++   L               D             G+R  +   L    +  
Sbjct: 241 SRREYLTIEELNRLAQ----------TPCDPLLKRAALFSALTGIRHCDIQKLKWSEVEQ 290

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
                R+     K + V  +P   +A     +    +L +   LP          +P   
Sbjct: 291 FNGGYRLNFTQQKTKGVEYMPISEQAYNLCGEQKEGELLVFAGLP----------DPSWI 340

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            R +++     G+    T H  RHS+AT  L+ G D+ ++  +LGH  + TTQ+Y  V  
Sbjct: 341 NRPVKKWVEAAGITKHITFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKVVD 400

Query: 304 KNGGDW 309
           +     
Sbjct: 401 EKKEKA 406


>gi|325269967|ref|ZP_08136576.1| integrase [Prevotella multiformis DSM 16608]
 gi|324987690|gb|EGC19664.1| integrase [Prevotella multiformis DSM 16608]
          Length = 411

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 56/292 (19%), Positives = 111/292 (38%), Gaps = 29/292 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K TL  Y+   +    FL   Y  + I ++ +     ++   F+  R  +     ++  
Sbjct: 130 AKGTLLKYKTVYKHLQEFLTIRYRVKDIALKELTPAFISDFEMFL--RTDKHCCTNTVWL 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +  +++ +      +  T         +KK  +    L +++   L++  L +   E  
Sbjct: 188 YVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKEEIRLLMEGRLKNAKQE-- 244

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRI-QGKGDKIRIVPLLPSV 206
                   +       GL  ++  +LT +N     D+   + I + K   +  + LL   
Sbjct: 245 ----LYRDLYLFCAFTGLSFADMRNLTEENIHTYFDEHEWININRQKTGVVSNIRLLDIA 300

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           ++ I +Y  LC                R  P+ +       IR + +  G+    T H  
Sbjct: 301 KRIIDKYRGLCG-------------NGRIFPVPHYNTCLAGIRSVAKRCGITKHITWHQS 347

Query: 266 RHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           RH+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +     M  +  +
Sbjct: 348 RHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMENLAAR 399


>gi|53711947|ref|YP_097939.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52214812|dbj|BAD47405.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 406

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 58/286 (20%), Positives = 117/286 (40%), Gaps = 26/286 (9%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSLKRSL 92
            T+Q YE  TR    F+    E +++   +  L    I  F +  +  +     S    L
Sbjct: 132 KTVQRYETTTRYLEEFIK--KEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSAITRL 189

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +K  ++   +     +      R  K   + P  L   +       ++L      K +
Sbjct: 190 KNLKKIIRIALENDWIKKDPFAYYR-FKLEETDPEFLTMDEIK-----IILAKEFTIKRV 243

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQG---KGDKIRIVPLLPSVRK 208
           +      ++ ++  GL  S+   L+P++++ D++  L I+    K   +  +P+LP    
Sbjct: 244 EQVRDVFIFCVF-TGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAVS 302

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            + +Y ++      L   LP+        L+      Y++++    G+  + + HT RHS
Sbjct: 303 ILEKYKNVAECTGKL---LPV--------LSNQRMNSYLKEIADVCGIHKNLSTHTARHS 351

Query: 269 FAT-HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +AT   L+NG  + ++  +LGH   S T+ Y  V  +N    M ++
Sbjct: 352 YATSICLANGVSMENVAKMLGHADTSITKHYARVLDQNIFKDMQKV 397


>gi|298482697|ref|ZP_07000881.1| tyrosine type site-specific recombinase [Bacteroides sp. D22]
 gi|298271160|gb|EFI12737.1| tyrosine type site-specific recombinase [Bacteroides sp. D22]
          Length = 416

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/308 (16%), Positives = 102/308 (33%), Gaps = 31/308 (10%)

Query: 11  SFELLKERQNWLQNL-EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           + +L + R N+++    ++R     +  S   + R+    L  + +    +    Q+   
Sbjct: 121 AEQLERSRSNFIEYFDHVQRTRHAHSSDSIIVNWRRVHELLKIFAKSDTIL--FSQIDIK 178

Query: 70  EIRAFISKR--------RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            + +F            +   I   +     S  K+ LK        T      ++ +++
Sbjct: 179 LVESFRQFIMNAPQGGTKRGTISQNTAATYFSIFKAGLKQAFIDGYLTIDISAKVKGIQE 238

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
             S    L  ++   L               D             G+R  +   L    +
Sbjct: 239 RESRREYLTVEELNRLAQ----------TPCDPLLKRAALFSALTGIRHCDIQKLKWSEV 288

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
                  R+     K + V  +P   +A     +    +L +   LP          +P 
Sbjct: 289 EMFNGGYRLNFTQQKTKGVEYMPISEQAYSLCGEQQEGELLVFAGLP----------DPS 338

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              R +++     G+    T H  RHS+AT  L+ G D+ ++  +LGH  + TTQ+Y  V
Sbjct: 339 WINRPVKRWVEAAGISKHITFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVKTTQVYAKV 398

Query: 302 NSKNGGDW 309
             +     
Sbjct: 399 VDEKKEKA 406


>gi|218128949|ref|ZP_03457753.1| hypothetical protein BACEGG_00521 [Bacteroides eggerthii DSM 20697]
 gi|217988912|gb|EEC55229.1| hypothetical protein BACEGG_00521 [Bacteroides eggerthii DSM 20697]
          Length = 411

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 54/297 (18%), Positives = 110/297 (37%), Gaps = 28/297 (9%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLK 89
            S +T+  Y+   ++  + +  Y  ++    T  +L+   IRAF    +T+  +   ++ 
Sbjct: 129 YSPVTINRYKNVVKKLQLLIPSYYGKE--DVTFHELTPEFIRAFDIYLKTEAGLCRNTIV 186

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R +   K F      ++   ++     + +++  + P  L   +  T++         E 
Sbjct: 187 RYMKCFKKFTNMALAKEWMRKNPFYGYK-MEQDETDPVFLTYDELQTVMKKKFTIPRLEL 245

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP----- 204
                    +       GL  S+  SL  +N++ D        KG               
Sbjct: 246 V------RDVFVFACFTGLAFSDVASLNKENLVQDNLGDWWIRKGRVKLEHRRKASSISN 299

Query: 205 ----SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
                V  AILE Y   P  +     LP+    +           Y++++  +  +  + 
Sbjct: 300 IPLLPVPLAILEKYKEHPTCIKKGCCLPVMCNQKM--------NSYLKEIADFCSIKKNL 351

Query: 261 TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           T H  RH+F T + L+N   L+ +  +LGH     TQ Y  V + +  + M  + ++
Sbjct: 352 TTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNSVKER 408


>gi|228988991|ref|ZP_04149022.1| Integrase-recombinase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228770753|gb|EEM19287.1| Integrase-recombinase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 390

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 112/298 (37%), Gaps = 34/298 (11%)

Query: 38  SYECDTRQFLIFLAFYTEE--------KITIQTIRQLSYTEIRAFISKRRT-------QK 82
           SY  +   F   +  + EE        +     ++ L    IR + S  +          
Sbjct: 90  SYVSEILSFCQCMVQHAEEFELNGEEVQQNASLLKTLQPWHIRKYNSWLKQVQKGRNGDT 149

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNLKKSNSLPRALNEKQALTLVDN 140
               +L +    I+SFLK+L       +   + L   N+ + +   R L+  + + ++  
Sbjct: 150 YAVATLAKKTVLIRSFLKHLYVFAYIEKPLHDELQRANVNEQDRPNRDLSYDEVMKILGF 209

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQGKGDKIRI 199
                    +     N  IL  L   G RI E  +   ++   D +  L++ GKG+K+R 
Sbjct: 210 Y-------KERGHLVNYTILLALASTGARIQELCTTRVKDLHYDGKHWLKVTGKGNKVRE 262

Query: 200 VPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           + +   + + I E          L+   + PLF   RG   N  +    +  + +   L 
Sbjct: 263 LFISEHLYQCICEMRQRRGLKTILDRGDESPLFINQRGNFYNSKMLSNQVTDMIKKTDLE 322

Query: 258 L------STTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                    TAHT RH+FA   +  G  DL  +   LGH  + TT+IY   + K   +
Sbjct: 323 FLQFRENPVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKRKNN 380


>gi|30263937|ref|NP_846314.1| prophage LambdaBa02, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Ames]
 gi|47529369|ref|YP_020718.1| prophage lambdaba02, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186785|ref|YP_030037.1| prophage LambdaBa02, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Sterne]
 gi|65321262|ref|ZP_00394221.1| COG0582: Integrase [Bacillus anthracis str. A2012]
 gi|30258581|gb|AAP27800.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. Ames]
 gi|47504517|gb|AAT33193.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180712|gb|AAT56088.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. Sterne]
          Length = 325

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 61/298 (20%), Positives = 117/298 (39%), Gaps = 19/298 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           VS E     +++L   + + G +  TL+ Y  D R  L  +  + E K    ++ +L+  
Sbjct: 17  VSQENKSLVKDFLIEKKAQ-GKAASTLKQYGWDLRIILFLIHQHFENK----SLIELTRK 71

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRN-LKKSNSLP 126
           +IR      +   + +  +   +S ++S L++           +    +R   K      
Sbjct: 72  DIRNLSIIFQELGMSNARVNGLMSALRSALEFCADDDDYEYEFNVGSRVRGLPKNPVREI 131

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             + E+Q   L+D +++             +  L L Y    R +E   +  + + +   
Sbjct: 132 TFITEEQIEWLIDELIVQEK-------YMLATYLALSYYSAARKNEVYQVQKEELTERYY 184

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           T  ++GK  K   +   P V+K I  Y +    D   ++ + +++    K LN  VF  +
Sbjct: 185 TNIVRGKRGKKFRLYYNPRVQKCIRLYINQRGKDTIPDLFVRVYKNGGRKLLNKSVFNYW 244

Query: 247 IRQLRRYL----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            +   + L    G       H  RHS   +L   G  L  ++S+  H  +STTQ Y  
Sbjct: 245 CKIFAKMLYEKEGKEFKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSYLK 302


>gi|312899212|ref|ZP_07758550.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0470]
 gi|311293646|gb|EFQ72202.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0470]
          Length = 384

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 57/328 (17%), Positives = 113/328 (34%), Gaps = 42/328 (12%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKIT 59
           + N +P   +    +    WL+N        K T++  SY        I    +      
Sbjct: 57  QKNGIPSSTNITFQEVAFMWLENY-------KNTVKESSYSRT----EIIFRKHILPSFG 105

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
              I ++S    +  ++   ++    +     ++ I    K+     +T ++ ++N+   
Sbjct: 106 KIEISKISTAYCQKIVNTWHSKG-SSKQYPLFINYINQVFKFAINIGVTNQNPVINVIVP 164

Query: 120 K-----KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           K      S    +   + Q    + ++      E+ +I  R+  +  LL   G RI E L
Sbjct: 165 KNQDIITSEKKIKFYTKDQLQIFLKSIEQS---ESTYITIRDYTLFRLLAFSGCRIGELL 221

Query: 175 SLTPQNIMDDQSTLRIQGK---------------GDKIRIVPLLPSVRKAILEY-YDLCP 218
           +LT  ++      L+I                      R + L       + ++  +   
Sbjct: 222 ALTWDDLNIKTGELQINKTIAKSDHYYVSNTPKTKKSNRTLILDAKTITILKKWKLEQKK 281

Query: 219 FDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
           + L L    P  +F     +              R+   LP +   H  RH+ A+ L   
Sbjct: 282 YLLKLGYTQPSRIFTNEENEFTINQAITDRYNIYRKKANLP-NIGLHGFRHTHASLLYYA 340

Query: 277 GGDLRSIQSILGHFRLSTT-QIYTNVNS 303
           G D + +Q  LGH  + TT   YT++ +
Sbjct: 341 GADHKEVQERLGHANIKTTLDTYTHLTN 368


>gi|326776078|ref|ZP_08235343.1| integrase family protein [Streptomyces cf. griseus XylebKG-1]
 gi|326656411|gb|EGE41257.1| integrase family protein [Streptomyces cf. griseus XylebKG-1]
          Length = 328

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 57/298 (19%), Positives = 114/298 (38%), Gaps = 36/298 (12%)

Query: 41  CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLK 100
              R     +  +         +R ++  +++++I     +++G  ++KR+ + + S ++
Sbjct: 36  HTLRGDASSIKNHVLPHWADWEMRAVTRMDVQSWIRGLVEKRVGASAIKRAHNLLSSIMR 95

Query: 101 YLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
                 +   S   N+   + +   P+     QA ++VD            + A    + 
Sbjct: 96  AAVDDDVIAVSPCRNIDLPQIAIKPPQWFTLDQAQSIVDE-----------LPAPWRTMC 144

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRI------------QGKGDKIRIVPLLPSVRK 208
            L +  GLR  E  SL    I   +S L +                   R VPL P V  
Sbjct: 145 LLGFYTGLRWGELASLHRHRIDQRRSCLFVVEVNTKSSIKEYPKSSRSRREVPLPPHVLD 204

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ-------LRRYLGLPLSTT 261
           A+  +  L   D  +   +   +G  G+ L+ G ++R                G  L   
Sbjct: 205 ALERHIHLLDHDALVFTTIA--KGRAGRRLDDGNWRRQTWWPAIENAHYFDADGEQLPVP 262

Query: 262 ---AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               H++RH+ A+ L+  G  L  +Q +LGH    TTQ Y ++   +  + ++E +++
Sbjct: 263 HYPPHSMRHTCASWLVQKGVSLYEVQHLLGHESFQTTQRYAHL-QPDAHEAVLEAWER 319


>gi|288926827|ref|ZP_06420735.1| integrase [Prevotella buccae D17]
 gi|288336399|gb|EFC74777.1| integrase [Prevotella buccae D17]
          Length = 407

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 118/287 (41%), Gaps = 26/287 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKR 90
           S  TL+ YE   R F  FL        T   + +L+YT I  F    +T       +  +
Sbjct: 129 SATTLRKYELCKRHFAEFLKQKYSR--TDIKLCELTYTVIYDFDLYLQTAAGQCRNTATK 186

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           ++   K+     +K  +       N   +L+  +     L +++ L +V+  L       
Sbjct: 187 TMKIFKTITILGRKLGVLHHDPFANYHFHLELVDR--GFLTDEEILKIVNKKLTIP---- 240

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRIQGKGDKIRIVPLLPSV 206
           +    R+  I       GL   +  +LTP++   + D Q  +  + K +    + LL   
Sbjct: 241 RLSLVRDIFIFSCF--TGLSYIDVANLTPEHLVNMDDKQWIMTKRQKTNVESNILLLDIP 298

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           ++ I +Y +    D        LF  +  + +N      Y++++    G+  + T H  R
Sbjct: 299 KQIIAKYSNKTYRDSK------LFPVLSNQKMNA-----YLKEIADICGIGKNLTFHMAR 347

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           H+FAT  LS G  + S+  +LGH  L TTQIY  + +K     M E+
Sbjct: 348 HTFATMSLSKGVPMESVSKMLGHTNLKTTQIYARITNKKIEHDMEEL 394


>gi|320160302|ref|YP_004173526.1| hypothetical protein ANT_08920 [Anaerolinea thermophila UNI-1]
 gi|319994155|dbj|BAJ62926.1| hypothetical protein ANT_08920 [Anaerolinea thermophila UNI-1]
          Length = 302

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 104/287 (36%), Gaps = 26/287 (9%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L+     W   L+ + G S  T++++  D      FL        T+ +I          
Sbjct: 19  LMPAILTWEIYLKDQ-GRSPHTIKAFMGDLNLLASFL----PPDRTLGSITTQDLNHFLQ 73

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++ K R      +SL R ++ IK+F ++L++  +      L +      + LP  L  ++
Sbjct: 74  WLEKGRGIPCSPKSLARRITSIKAFFRWLQRSGVLLNDPALRVIQQSVISPLPEVLTPEE 133

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRI 190
              +++  +          DAR   ++ LL    ++ SE L++T  +I  +      L +
Sbjct: 134 VEAVLE--VARNWRSRSKPDARPYTLVKLLLETAIKKSECLAITRNHIDPEGKEGPVLYV 191

Query: 191 Q----GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           +        K R +PL     +A  EY                    +  P +P   +  
Sbjct: 192 RYASPSNRYKERNLPLSEEWIEAYQEYLAQYQ------------PADQIFPWSPRRLEYI 239

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           +  L    GL    +    R + A     NG +   I+  LG  ++ 
Sbjct: 240 LEDLSEAAGLAKHLSFDMCRWTSALMDWKNGMEGDQIRQKLGVSKIQ 286


>gi|307578043|gb|ADN53661.1| integrase [Staphylococcus aureus]
          Length = 390

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/313 (15%), Positives = 105/313 (33%), Gaps = 43/313 (13%)

Query: 36  LQSYECDTR----QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           L+ Y  D +    +       +  E+   + I+ +   + + F++    Q      +   
Sbjct: 72  LKQYANDVKVSSVRAREKAIHHAIERFNNKPIQTIKKHDYQRFVNDISAQ-YSKNYVDSI 130

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL---------PRALNEKQALTLVDNVL 142
           ++      KY    K+        ++  KK  S+          + L + +    ++   
Sbjct: 131 IASTNMIFKYAYDMKLIRILPSEGIKRPKKKVSVEELEDTEIHKKFLEKDELFQFLEVAK 190

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-- 200
            H S +  +       +   L   G+R  E L+L   +I  + +T+ I            
Sbjct: 191 NHHSPQNSFE------VFCXLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNNNKK 244

Query: 201 ----------------PLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPG 241
                           P+ P V K +  Y           + +    +F  + G PL   
Sbjct: 245 QYQILTPKTESSIGKIPVDPHVIKLLKNYKTDVQDTWKNELYVDNNFVFTDVNGYPLVIK 304

Query: 242 VFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYT 299
             Q +I+ + +   +     + H+ RH+    L+  G  ++ IQ  L H  ++TT  IY 
Sbjct: 305 KLQLWIKAILKNTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYA 364

Query: 300 NVNSKNGGDWMME 312
            + +    D   +
Sbjct: 365 KITNSYKKDASQK 377


>gi|317505585|ref|ZP_07963495.1| integrase [Prevotella salivae DSM 15606]
 gi|315663297|gb|EFV03054.1| integrase [Prevotella salivae DSM 15606]
          Length = 429

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 62/286 (21%), Positives = 106/286 (37%), Gaps = 24/286 (8%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLS 93
           TLQ Y    + F  FL        +   + +L Y  I  F    RT       +  R + 
Sbjct: 151 TLQKYNVCKKHFSNFLRDKYGR--SDIRLSELGYIVIHDFDIYLRTVVGQNPNTATRMMK 208

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
             K+     +K  +      LN+R   +  +    L +++ L +      +       ++
Sbjct: 209 TFKTITILGRKLGVLHHDPFLNIRFHMEPVNR-GFLTDEEILKI-----ANKDFGIGRLE 262

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
                 ++  +  GL   +  +L P+NI      Q  +  + K      V LL   +  I
Sbjct: 263 LVRDVFVFSCF-TGLAYIDVYNLAPENIVTLNGKQWIMTKRQKTSVETNVLLLDIPKSII 321

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            +Y      D           G     L       Y++++    G+  + T H  RH+FA
Sbjct: 322 AKYSGKTYRD-----------GKLFPMLTNQKLNSYLKEIADICGIKKNLTFHLARHTFA 370

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           T  LS G  + S+  +LGH  + TTQIY  + +K     M E+ D+
Sbjct: 371 TMSLSKGVPIESVSKMLGHTNIKTTQIYARITNKKIEHDMDELADK 416


>gi|60681762|ref|YP_211906.1| putative phage integrase [Bacteroides fragilis NCTC 9343]
 gi|60493196|emb|CAH07978.1| putative phage integrase [Bacteroides fragilis NCTC 9343]
          Length = 387

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 107/287 (37%), Gaps = 27/287 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           R L   T + ++   R+F  +               +L+   +R ++   + T    D +
Sbjct: 117 RRLEIGTFRHHKSCMRKFKEYCEGLQ--------FHELTEDFLRDYLIYMKKTLCNADST 168

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
            +R+LS IK ++    K+         +   +K+  S    L E++ +  +         
Sbjct: 169 AQRNLSTIKIYVSAAIKKGYMENDPFKDF-GVKRIKSNIDYLTEEELIKFISLYYDRRLP 227

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKGDKIRIVPLLP 204
           E              +    L IS+A  +  + I +   T   ++ +    +   +PL  
Sbjct: 228 ERLERTLG---FFLFMCFTSLHISDARHVCLEQINNGILTYYRIKNRNCKPEAIKIPLSI 284

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
              K I E             +  LF  ++       V  R I+++   L +    +A T
Sbjct: 285 PAFKIIEE-------LQGKRKEGHLFTSLQCD----QVVNRQIKEIASILEIKKKVSAKT 333

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            RH+FAT  L    D+ ++Q +LGH  L  T IY +V  ++  + M 
Sbjct: 334 GRHTFATIFLKKTKDVATLQKLLGHSNLKETMIYAHVLDESKQEGMQ 380


>gi|237732963|ref|ZP_04563444.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229383953|gb|EEO34044.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 396

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 114/290 (39%), Gaps = 32/290 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +    ++ +  ++I  +  ++ R +  + + +    +++      +K+      +     
Sbjct: 111 MQALEDDILGSRSIDSIKPSDAREWAIRMKEKGFSYKTISNYKRSLKASFYMAIEDDYVR 170

Query: 110 ESNI-LNMRNLKKSNSLPRA-LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     +  + + +S P+  L+E+Q   L+D +    +H+  +    +  ++  L   G
Sbjct: 171 KNPFDFKLSEVIEDDSEPKVALSEEQEQALLDFM----AHDNVYRKYYDDVLI--LLKTG 224

Query: 168 LRISEALSLTPQNIMDDQSTLRIQG---------------KGDKIRIVPLLPSVRKA--- 209
           LRISE   LT +++  +   + +                     IR VP+     +A   
Sbjct: 225 LRISELCGLTKKDLDFENHAISVNHQLLKDKDGYYIDEPKTKSGIRKVPMSDETEQAFQR 284

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-----LSTTAHT 264
           +L+             +  LF    G P++  +++  ++++ +             T HT
Sbjct: 285 VLKRKQKSNIKEIDGYRNFLFLNTSGSPVHKQMYETILKRMVQKYNKTHEVKLPKITPHT 344

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDWMMEI 313
           LRH+F T L     + +++Q I+GH  +  T  +Y + +       M  +
Sbjct: 345 LRHTFCTRLAQKNMNPKNLQYIMGHSNIMLTLNLYAHSSEIGANREMRSM 394


>gi|290476509|ref|YP_003469414.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii
           SS-2004]
 gi|289175847|emb|CBJ82650.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii
           SS-2004]
          Length = 207

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 68/173 (39%), Gaps = 7/173 (4%)

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L   +   L+  +  H   E       N  ++++ +  G R+SE L L   +   +   
Sbjct: 10  YLTHSEIEILLKELGKHPHAER------NICMIFMGFIHGFRVSELLGLKLSDADLEGKK 63

Query: 188 LRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           LR+Q  K     I P++    + I ++        N      LF    G P++   F + 
Sbjct: 64  LRVQRLKNGFSTIHPMVMREVQLIRQWLAQRQKYKNSEQNDWLFLSRTGVPMSRQQFYKI 123

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           IRQ      L +    H LRHS    L  NG D R IQ  LGH  +  T  YT
Sbjct: 124 IRQTSLQANLAVCANPHMLRHSCGYALADNGVDTRLIQDYLGHRNIRHTVRYT 176


>gi|111023933|ref|YP_706905.1| transposase [Rhodococcus jostii RHA1]
 gi|110823463|gb|ABG98747.1| possible transposase [Rhodococcus jostii RHA1]
          Length = 399

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 67/339 (19%), Positives = 118/339 (34%), Gaps = 71/339 (20%)

Query: 23  QNLEIERGL-SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           + LE  R L S  T++ Y     Q+  FL    E    +   R +    +  F+S  R  
Sbjct: 36  EWLESHRTLWSPNTVRGYATALAQWWTFLEQRDE----VGKWRDVGVPAVTGFLSWLRNG 91

Query: 82  KI------------GDRSLKRSLSGIKSFLKYLKK--------------------RKITT 109
           +             G  +L+  L+ + SF ++ +                     R +  
Sbjct: 92  RTVERSLVPQEQVPGASTLEARLAALMSFYRWQEAVFGVPVAGRLMRGAPRRMPARGLLA 151

Query: 110 E---------SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID-ARNSAI 159
                     S+++ +R   +    P  L   Q   +++   +  S   +W+   R+  +
Sbjct: 152 HLDARAAARPSSLVRVRRGHRGTGRPPLLLPGQIQAILNGCAVFDSATGEWVGNLRDRFL 211

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQS---TLRI----------QGKGDKIRIVPLLPSV 206
             LL   G+R+ EAL L   + +  +     + I          + K  + R V +   +
Sbjct: 212 FALLAETGMRLGEALGLRISDFVMGRGGTPFVEIVPRHDNANGARVKMMRPRRVYVGADL 271

Query: 207 RKAILEYYDLCPFD-----LNLNIQLPLFRGIRGKP----LNPGVFQRYIRQLRRYLGLP 257
            +   +Y            L L ++ PL   +   P    L  G  +     LRR  G+ 
Sbjct: 272 ERLFADYLTHIACRATELGLPLRVESPLLVNLFRPPFLSSLREGTVRDKTNALRRR-GIG 330

Query: 258 L-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           +   + H  RHS AT LL  G     +   LGH  + TT
Sbjct: 331 VEGWSPHWFRHSHATALLLAGTPEWVVSRRLGHAHVQTT 369


>gi|228908344|ref|ZP_04072189.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis IBL 200]
 gi|228851385|gb|EEM96194.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis IBL 200]
          Length = 369

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 58/315 (18%), Positives = 116/315 (36%), Gaps = 39/315 (12%)

Query: 18  RQNWLQNLEIERGLS--KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            +++L +    + +S  K T   Y+        F+  +    I I  + +L+   I+   
Sbjct: 65  LKDYLNHWLEIKSMSIEKSTFAGYK-------AFINQHVIPSIGIVALHKLNVIHIQKCY 117

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                + I + S+      +KS L    K+ I + +        KK  +  +   E++  
Sbjct: 118 KTAIDKGIANNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKTPIQTWTEEEVK 177

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
             + +     S E+++      AI       G+R+ E L L  Q+I  ++ T+ I     
Sbjct: 178 KFLAH-----SQESRYHIGYLLAI-----TTGMRLGEVLGLRWQDIDFEKHTVTINQTSG 227

Query: 196 KI-------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-----FRGIRGKP 237
                          R +P+      A+ ++  L   +        L          G+ 
Sbjct: 228 HDNKIKKTAKTNSSKRTIPVPNETIAALKKHKILINKEKLRFGSAYLDQDLINCNEFGRI 287

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
           +    F++   ++   +G+      H LRH+ AT LL  G + + I   LGH  +S T  
Sbjct: 288 IKRAHFRKSFIRMTHKVGI-KEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLS 346

Query: 297 IYTNVNSKNGGDWMM 311
           +Y++V      + + 
Sbjct: 347 VYSHVLPNMQEEAVK 361


>gi|325288214|ref|YP_004264395.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324963615|gb|ADY54394.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 403

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 58/270 (21%), Positives = 102/270 (37%), Gaps = 39/270 (14%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           T+ +++   I+ F      +     ++    + ++  L+   K++I   +    +   KK
Sbjct: 128 TLAEVTPQHIQDFHQSIFDEGHTPNTVIHYHAVLRRALQNAVKKEIIGSNPADRVDRPKK 187

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           +    +  + ++ + L D +          ++      + L    GLR SE L L    I
Sbjct: 188 NVYHAQFYSAEEMMALFDAI------SDDPLEIC----VKLAAYYGLRRSEVLGLKWDAI 237

Query: 182 MDDQSTLRIQGK--------------------GDKIRIVPLLPSVRKAIL-------EYY 214
             +Q T+ I+ K                        R +PLLPSV K +L        Y 
Sbjct: 238 NLEQKTISIKHKVIEDTVDGKSIAVGEDVLKTKSSFRTLPLLPSVEKLLLAEKEKQEMYR 297

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
            L       +    +     GK + P     +   +     L      H LRHS A+ LL
Sbjct: 298 KLFKRSYCRDYLDYICLDQTGKLMRPNYVTDHFSWVLEKADL-KKIRFHDLRHSCASLLL 356

Query: 275 SNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
           +NG  ++ IQ  LGH   STT  IY++++ 
Sbjct: 357 ANGISMKQIQIWLGHSTFSTTADIYSHLDF 386


>gi|260593040|ref|ZP_05858498.1| integrase [Prevotella veroralis F0319]
 gi|260535012|gb|EEX17629.1| integrase [Prevotella veroralis F0319]
          Length = 438

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 66/286 (23%), Positives = 108/286 (37%), Gaps = 24/286 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSLKR 90
           S  TLQ Y    + F  FL      K     + +L++T I  F    RT       ++ +
Sbjct: 160 SVATLQKYNVCKKHFAAFLNEKY--KRCDIRLSELTFTVIHDFDIYLRTTAGQNPNTVTK 217

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           ++   K+     +K         +N  +          L +++ + + +        E  
Sbjct: 218 TMKTFKTITILGRKMGALNHDPFIN-HHFHLEPVNRGFLTDEEIMKIANKDFGINRLEL- 275

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVR 207
               R+  I       GL   +  +LTP NI    D Q  +  + K      V LL   +
Sbjct: 276 ---VRDIFIFSCF--TGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPK 330

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + I +Y      D  L   LP+        L       Y++++    G+    T H  RH
Sbjct: 331 RIITKYGHKTYRDGKL---LPV--------LTNQKINAYLKEIADLCGIKKRLTFHLARH 379

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +FAT  LS G  + S+  +LGH  + TTQIY  + +K     M E+
Sbjct: 380 TFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEEL 425


>gi|260174773|ref|ZP_05761185.1| putative phage integrase [Bacteroides sp. D2]
 gi|315923027|ref|ZP_07919267.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696902|gb|EFS33737.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 381

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 96/248 (38%), Gaps = 16/248 (6%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
             ++++  + +F +  R     D +  R+++ IK ++    +     +     ++ +++ 
Sbjct: 143 FSEITHEFLLSFFAYLRKIGNMDSTAWRNMATIKIYVGAAIRGGYMDQDPFAAIK-IRRP 201

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            S    L E++ L L    L  +    +         L+L +   L I +A +L     +
Sbjct: 202 KSEVIYLTEEELLRL--TALYRSGRLEECTQNVLRFFLFLCF-TSLHIGDAKALQINQFI 258

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
            ++     +GK      VPL    R  I EYY       NL + LP              
Sbjct: 259 GNELHYT-RGKTKIPVTVPLSDPAR-YIYEYYRAGRTKGNLFMNLP----------TDQD 306

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             R ++ +   +G+    ++ T RH+FAT       D+ ++  +LGH  ++ T +Y +  
Sbjct: 307 INRVLKTIAGKVGITKDISSKTGRHTFATLYYKKTHDIVTLSHLLGHSSITMTMVYAHAL 366

Query: 303 SKNGGDWM 310
                  +
Sbjct: 367 EDEREAGI 374


>gi|325001050|ref|ZP_08122162.1| integrase family protein [Pseudonocardia sp. P1]
          Length = 348

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 66/317 (20%), Positives = 117/317 (36%), Gaps = 32/317 (10%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEE---------KITIQTIRQLSYTEIRAFISKRR 79
           RGL ++T+   E   R+F+ F   Y  +           ++   R L+   IR +    R
Sbjct: 16  RGLREVTMARREQLVRRFVAFTNEYPWDWSPAHVDEWSQSLVGERHLALASIRGYQGSLR 75

Query: 80  TQK--IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +    I D     +++  K F        I  E N +   +  + +   R    ++    
Sbjct: 76  SFSDYITDGRYGWAVACEKQFGPGRHPVPICHEWNTIAHLDDYEGSPEARPFTREELQRF 135

Query: 138 VDNVLLH------TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--------MD 183
           +D              +      R++ +  ++YG GLR +E   L   +           
Sbjct: 136 LDYADDQVGRAVTAKRKGALAAYRDATLFKVIYGWGLRRTETAQLDLADWGRNPAAAEFG 195

Query: 184 DQSTLRIQGKG-------DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
               L ++           +  +  ++    +A+ +Y D          +  L+   RG 
Sbjct: 196 RFGMLHVRYGKAVRGQPPRRRNVPSIMGWAVEAVADYVDNIRPRFGGAERPGLWVTERGG 255

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L P          R  LGLP   + H+LRHS+ THL  +G D R IQ  +GH   ++T 
Sbjct: 256 RLKPVEINARFAAYRDALGLPRELSPHSLRHSYVTHLTEDGVDRRFIQEAVGHRCDTSTA 315

Query: 297 IYTNVNSKNGGDWMMEI 313
           IYT+V+S      + + 
Sbjct: 316 IYTHVSSDFMNTALRQA 332


>gi|325300611|ref|YP_004260528.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324320164|gb|ADY38055.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 410

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 60/308 (19%), Positives = 118/308 (38%), Gaps = 25/308 (8%)

Query: 14  LLKERQNWLQNLEIE--RGLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTE 70
            L     +L++++ +  +G +  T   Y    + F  FL   Y  + I    +  +   +
Sbjct: 109 FLDFYGKYLEDIKAQVGKGKTLATYHKYSAAGKHFENFLKLKYGRKDIMPSELTHVIIHD 168

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
              ++  R    +   S  ++L   K+ + + +K  + T       R     +     L 
Sbjct: 169 FDIYL--RTVVSLKPNSATKTLKFFKTVVIFAQKCGVLTHDPFAQHR-FHLESVDRGFLT 225

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTL 188
           + +   +++        E+     R+  I      CGL   +  +LT  NI+  D +  +
Sbjct: 226 DDEITRIMEKEFSTPRLES----VRDIFIFSCF--CGLAYIDVANLTQDNIVTLDGKKWI 279

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
             + +   +    LL  +   I+  Y     D           G     L+      Y++
Sbjct: 280 MTRRQKTHVESNILLLDIPLMIINKYKGKTKD-----------GKLLPILSNQKMNAYLK 328

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           ++    G+    T H  RH+FAT +LS G  + S+  +LGH  + TTQIY  + +K    
Sbjct: 329 EIADLCGIKKRLTYHLARHTFATMMLSKGVPVESVSKMLGHANIKTTQIYARITNKKIEH 388

Query: 309 WMMEIYDQ 316
            MM + ++
Sbjct: 389 DMMNLSEK 396


>gi|312129988|ref|YP_003997328.1| integrase family protein [Leadbetterella byssophila DSM 17132]
 gi|311906534|gb|ADQ16975.1| integrase family protein [Leadbetterella byssophila DSM 17132]
          Length = 275

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 112/283 (39%), Gaps = 31/283 (10%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + + + L+  +  S  T+ +Y      F      Y + K T + I +        +I  
Sbjct: 5   IERFTELLKKGKYNSA-TIAAYRNAIFVFYNNFRDYPQNKFTDELISE--------YILN 55

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             ++K   +   ++   I  F   +  RK+    NI     +K+  ++   L++ +  TL
Sbjct: 56  L-SKKTNPQVAAQTGKAIILFFDKIYNRKL----NIKATGKIKEEQTI-EILSKSELQTL 109

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                      +   + ++  +L ++Y  GL+++EA++L   +I  + +T++I     K 
Sbjct: 110 F----------SSIKNLKHKLLLIMIYNNGLKVNEAINLKVGDIDTENNTIKIDADQPKK 159

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRRYLGL 256
             +  L      ++E Y               F G  G    +    Q   ++  +   +
Sbjct: 160 SRLLRLSPALNGLIEEYKQKY-----KPSDVFFPGSGGIGHYSARNIQLVFQKALKEAKI 214

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
             +    TLRHSFA H L NG  +  +Q ILGH  + TT  Y 
Sbjct: 215 EKAAKLTTLRHSFAVHSLENGISINHLQKILGHSNIQTTSFYA 257


>gi|299142888|ref|ZP_07036015.1| integrase [Prevotella oris C735]
 gi|298575617|gb|EFI47496.1| integrase [Prevotella oris C735]
          Length = 410

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 62/286 (21%), Positives = 107/286 (37%), Gaps = 24/286 (8%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLS 93
           TLQ Y    + F  FL        +   + +L Y  I  F    RT       +  R + 
Sbjct: 132 TLQKYNVCKKHFSNFLRDKYGR--SDIRLSELGYIVIHDFDIYLRTVVGQNPNTATRMMK 189

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
             K+     +K  +      LN+R   +  +    L +++ L +      + +     ++
Sbjct: 190 TFKTITILGRKLGVLHHDPFLNIRFHMEPVNR-GFLTDEEILKI-----ANKNFGIGRLE 243

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
                 ++  +  GL   +  +L P+NI      Q  +  + K      V LL   +  I
Sbjct: 244 LVRDVFVFSCF-TGLAYIDVYNLAPENIVTLNGKQWIMTKRQKTSVETNVLLLDIPKSII 302

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            +Y      D           G     L       Y++++    G+  + T H  RH+FA
Sbjct: 303 AKYSGKTYRD-----------GKLFPMLTNQKLNSYLKEIADICGIKKNLTFHLARHTFA 351

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           T  LS G  + S+  +LGH  + TTQIY  + +K     M E+ D+
Sbjct: 352 TMSLSKGVPIESVSKMLGHTNIKTTQIYARITNKKIEHDMDELADK 397


>gi|288906333|ref|YP_003431555.1| integrase/recombinase, phage associated [Streptococcus gallolyticus
           UCN34]
 gi|325979346|ref|YP_004289062.1| phage integrase family integrase/recombinase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288733059|emb|CBI14640.1| integrase/recombinase, phage associated [Streptococcus gallolyticus
           UCN34]
 gi|325179274|emb|CBZ49318.1| phage integrase family integrase/recombinase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 388

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/295 (17%), Positives = 108/295 (36%), Gaps = 27/295 (9%)

Query: 34  LTLQSYECDTR-QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
            T ++ E   R   L     Y  EK+T   I+Q    ++  + +     K G       L
Sbjct: 88  NTRKAVEGQIRVHLLPAFGDYKLEKLTTPIIQQ----QVNKWANDYNKGKKGSYKHYNQL 143

Query: 93  SGI-KSFLKYLKKRKITTESNILNMRNLKKSNS---LPRALNEKQALTLVDNVLLHTSHE 148
             + K  L+Y    ++   +    +   +K  +     + L++++     D   L T  +
Sbjct: 144 HALNKRILQYAVIMQLIPFNPAREVIVPRKKQTEEVKIKFLDKQELKQFYDY--LDTLDK 201

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI----------- 197
           +K+ +  +  +   L   G RI E L+L   +I  D   + I    ++            
Sbjct: 202 SKYYNLFDVVLYKTLLATGCRIGEVLALEWSDIDLDNGYISINKTLNRDDEVNCPKSKAG 261

Query: 198 -RIVPLLPSVRKAILEY--YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            R + +  +    +  Y          +   +  +F     K  +    +R + +  +  
Sbjct: 262 YRDISIDKATILMLKHYKNRQTIQAWQHKRTETVVFSTFVNKYASQPALRRRLERHLKNA 321

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
           G+    + H LRH+ AT +L+ G   + +Q  LGH  +S T   Y +   +   +
Sbjct: 322 GVSY-VSFHGLRHTHATIMLNAGIQPKDLQYRLGHSDISMTLNTYVHATKEGAKN 375


>gi|254283616|ref|ZP_04958584.1| phage integrase family protein [gamma proteobacterium NOR51-B]
 gi|219679819|gb|EED36168.1| phage integrase family protein [gamma proteobacterium NOR51-B]
          Length = 355

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/271 (18%), Positives = 99/271 (36%), Gaps = 20/271 (7%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
           +   +            +     I +++  E++ F ++ R   +   +    L  ++  L
Sbjct: 86  KRTWKNDADMHRLRLGPRFGATPINRITRQEVQQFHNELREDGLAPATADHHLKLLRHAL 145

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
                  +   +    ++     N + R L++++   L+  +  H +          + I
Sbjct: 146 NLAVDWGMLQVNPAAKVKQFNSENLVERYLSDEEFKRLMRVLRDHENRPM-------ACI 198

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDL 216
           +  L   G R  EA + T  +I  DQ+   I+    K  K R VPL    R  + E    
Sbjct: 199 VLWLLATGARSGEAKAATWDDIARDQTVWTIRSEHSKSKKRRAVPLNDIARSVLQEIRAS 258

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
                       LF G RG         +   ++     L      H LRH++A+ L+++
Sbjct: 259 GC------TSGHLFVGKRGP---YKYLSKNWERICEEADLQ-GLRLHDLRHNYASMLVNS 308

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           G  L  +Q  LGH     T  Y++++ ++  
Sbjct: 309 GHSLYEVQQALGHSDPKVTMRYSHLSKESLQ 339


>gi|165872129|ref|ZP_02216768.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0488]
 gi|167633663|ref|ZP_02391987.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0442]
 gi|167640976|ref|ZP_02399233.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0193]
 gi|170688720|ref|ZP_02879924.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0465]
 gi|170705688|ref|ZP_02896151.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0389]
 gi|177654292|ref|ZP_02936221.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0174]
 gi|190565992|ref|ZP_03018911.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis Tsiankovskii-I]
 gi|227813155|ref|YP_002813164.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. CDC 684]
 gi|229600633|ref|YP_002868171.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0248]
 gi|254683634|ref|ZP_05147494.1| prophage LambdaBa02, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721470|ref|ZP_05183259.1| prophage LambdaBa02, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. A1055]
 gi|254735976|ref|ZP_05193682.1| prophage LambdaBa02, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Western
           North America USA6153]
 gi|254743870|ref|ZP_05201553.1| prophage LambdaBa02, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Kruger
           B]
 gi|254754354|ref|ZP_05206389.1| prophage LambdaBa02, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Vollum]
 gi|254757954|ref|ZP_05209981.1| prophage LambdaBa02, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str.
           Australia 94]
 gi|164712076|gb|EDR17614.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0488]
 gi|167511026|gb|EDR86415.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0193]
 gi|167531069|gb|EDR93756.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0442]
 gi|170129228|gb|EDS98092.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0389]
 gi|170667236|gb|EDT17995.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0465]
 gi|172080782|gb|EDT65863.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0174]
 gi|190562911|gb|EDV16877.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis Tsiankovskii-I]
 gi|227007263|gb|ACP17006.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. CDC 684]
 gi|229265041|gb|ACQ46678.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0248]
          Length = 322

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 61/298 (20%), Positives = 117/298 (39%), Gaps = 19/298 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           VS E     +++L   + + G +  TL+ Y  D R  L  +  + E K    ++ +L+  
Sbjct: 14  VSQENKSLVKDFLIEKKAQ-GKAASTLKQYGWDLRIILFLIHQHFENK----SLIELTRK 68

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRN-LKKSNSLP 126
           +IR      +   + +  +   +S ++S L++           +    +R   K      
Sbjct: 69  DIRNLSIIFQELGMSNARVNGLMSALRSALEFCADDDDYEYEFNVGSRVRGLPKNPVREI 128

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             + E+Q   L+D +++             +  L L Y    R +E   +  + + +   
Sbjct: 129 TFITEEQIEWLIDELIVQEK-------YMLATYLALSYYSAARKNEVYQVQKEELTERYY 181

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           T  ++GK  K   +   P V+K I  Y +    D   ++ + +++    K LN  VF  +
Sbjct: 182 TNIVRGKRGKKFRLYYNPRVQKCIRLYINQRGKDTIPDLFVRVYKNGGRKLLNKSVFNYW 241

Query: 247 IRQLRRYL----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            +   + L    G       H  RHS   +L   G  L  ++S+  H  +STTQ Y  
Sbjct: 242 CKIFAKMLYEKEGKEFKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSYLK 299


>gi|194398664|ref|YP_002038654.1| phage integrase family site-specific recombinase [Streptococcus
           pneumoniae G54]
 gi|194358331|gb|ACF56779.1| site-specific recombinase, phage integrase family [Streptococcus
           pneumoniae G54]
          Length = 377

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 116/319 (36%), Gaps = 53/319 (16%)

Query: 12  FELLKERQNWLQNLEIERGLSK-LTLQS-YECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +ELLKE ++ + +    R  S   T  + Y    + +             +  + +L+Y 
Sbjct: 67  YELLKE-EDSINH----RKASYINTQDNNYNKHIKDYFSM----------VDNVGKLTYE 111

Query: 70  EIRAFISKRR-------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +I  F    R        + +   ++ + +  +K       ++   + +    ++ L   
Sbjct: 112 DIYQFREHLRQKVAKNSDKPLSTNTINKIMILLKKIFDVGLRKGYYSSNPAKLIKKLPIE 171

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            +  +    K+    +           +  +     +  +L+  GLR+ EAL+LT Q+I 
Sbjct: 172 KTKMQFWTVKEFQKFLTLF--------EPEEYNIKLLFTVLFFTGLRLGEALALTWQDID 223

Query: 183 DDQSTLRIQG---------------KGDKIRIVPLLPSVRKAILEYYDLCPFDL----NL 223
              +T+ I                      R + +   + + + ++       L    N 
Sbjct: 224 FSSNTIHITKSVYVNKGVTHISTTKTKAGTRRIVINKKLSQELQDWEKRQKHLLEQFTNN 283

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
           ++ L +F+      +     ++  +++            H  RHS A+ L++ G D   +
Sbjct: 284 SLTLQVFQNSPIT-ITKNAIEKQYKKIIERDSTLKKIRIHDFRHSHASLLINQGEDYLVV 342

Query: 284 QSILGHFRLSTT-QIYTNV 301
           +  LGH  ++TT   Y+++
Sbjct: 343 KERLGHASITTTIDTYSHL 361


>gi|322831291|ref|YP_004211318.1| integrase family protein [Rahnella sp. Y9602]
 gi|321166492|gb|ADW72191.1| integrase family protein [Rahnella sp. Y9602]
          Length = 332

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 102/247 (41%), Gaps = 30/247 (12%)

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
            +    R +K+  R++   L+  ++ F +  +  +   ++ I N+R  +   S    L +
Sbjct: 113 DYARSNRVKKVAPRTINLELAYFRAVFNELGRLGEWKGDNPIKNVRPFRTEESEMAFLTK 172

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            Q   L++      +++         +I+ L    G R SEA  L  +N +        +
Sbjct: 173 DQIGKLLEECAREKNNDL-------VSIVKLCLSTGARWSEAEELN-KNQVTKYKITYTK 224

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            KG K R +P+   + +++ E                LF+         G F+  +   R
Sbjct: 225 TKGRKNRTIPISEELYESLPEVKKGR-----------LFKKCY------GAFRYALE--R 265

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             + LP     H LRH+FA+H + NGG++  +Q +LGH  +  T  Y +   ++  D + 
Sbjct: 266 TDIELPAGQLTHVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAHFAPEHLEDAVK 325

Query: 312 EIYDQTH 318
             Y+  H
Sbjct: 326 --YNPLH 330


>gi|222095006|ref|YP_002529066.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Q1]
 gi|221239064|gb|ACM11774.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Q1]
          Length = 370

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 107/271 (39%), Gaps = 31/271 (11%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           + +L+   ++ +++  R + +   ++++ +  I++ L++    ++ T++  +  +  K  
Sbjct: 107 LAKLTSLHMQNYVNSLRDEGLKRGTIEKIIKIIRNSLEHAIDLELITKNVAVKTKLPKGD 166

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
                   E++    +              D+R S + ++    G+R  E L L  +++ 
Sbjct: 167 KEELTVWTEEEVQLFLKA----------AQDSRYSIVFHMALVTGMRQGELLGLRWKDVD 216

Query: 183 DDQSTLRIQ--------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
            ++  L I                    +R + L  S    + ++  +   +     +  
Sbjct: 217 LEKGHLTISQTLSHDGKTFLLGGKTKSSLRKILLPASTIAKLKKHRAVVLKEKLSQGEEY 276

Query: 229 -----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                +     G P+NP   +R +  L +   +P     H LRH+ AT LL+ G +++ I
Sbjct: 277 QDNDLVMCTPSGTPINPANVRRSLNALIQKAAVPK-IRFHDLRHTHATMLLAKGVNVKVI 335

Query: 284 QSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
              LGH  +  T   Y++V      D + +I
Sbjct: 336 FERLGHSNIKITLDTYSHVLPTMQEDAVNKI 366


>gi|294619348|ref|ZP_06698812.1| phage integrase family protein [Enterococcus faecium E1679]
 gi|291594397|gb|EFF25810.1| phage integrase family protein [Enterococcus faecium E1679]
          Length = 378

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 54/318 (16%), Positives = 118/318 (37%), Gaps = 42/318 (13%)

Query: 18  RQNWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
            + +L     E     L   T ++Y    +        +    +  + +  LS   ++ F
Sbjct: 64  VKQYLDFWMEEYVKLNLKYNTYENYRFTIK-------NHINGYLGKKKLTDLSPALLQNF 116

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQ 133
           I+    +    +++  + S +K+ L        +  ++ +L ++  K     P    + +
Sbjct: 117 INAEFKKGYSKKTMTITHSVLKNALNMAVYPWGLIKQNPMLYVKIPKYEER-PTTKKDLK 175

Query: 134 ALTL--VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            ++L   D++L  T     +        L + +  G+R+ E   LT  N+     T+ ++
Sbjct: 176 IISLEDFDHMLEITPEGHPFYIP-----LNIGFYTGMRVGEVCGLTWDNVDFSNGTITVE 230

Query: 192 GKG---------------DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
            +                   R + +  ++   + ++      +     +L +       
Sbjct: 231 KQMVKNDGEWVYGTPKTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCT 290

Query: 237 P-----LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
                 + P V +   R++   L L  +   H+LRH+ AT LL NG  ++ I   LGH R
Sbjct: 291 KEDGELVTPSVVKWNTRRISNALSLSFN--FHSLRHTHATLLLENGAKMKEISERLGHSR 348

Query: 292 LSTTQ-IYTNVNSKNGGD 308
           +S T   Y++V  K   +
Sbjct: 349 ISITMDTYSHVTDKMRNE 366


>gi|228961482|ref|ZP_04123093.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228798196|gb|EEM45198.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 367

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 98/289 (33%), Gaps = 33/289 (11%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQL-SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSF 98
           +     ++  L  +    +  + +  + +   +  F  K   + +   ++    + +K  
Sbjct: 70  KTTLFNYIHILDTHIIPVLGNKKVEDIKTIHLVTLFHGKLPAKGLATTTINSIHTRVKML 129

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
            K   +     ++ +  +  LK      +  ++K+ + ++                 N  
Sbjct: 130 FKKACEWGFIKKNPMDGVSKLKNKRQELQPYDQKEIVKILALTEQEKD--------MNKM 181

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---------------GKGDKIRIVPLL 203
           +  L    G+R  E L L   +I      + IQ                     RI+ + 
Sbjct: 182 LFQLAIVTGMRRGELLGLEWGHIDFQNDMVHIQQTIVRAGKEILLKEPKTSKSKRIISIP 241

Query: 204 PSVRKAILEYYDLCPFD-------LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           P+    + +Y   C                L LF    G+PL P       +   +  GL
Sbjct: 242 PTFTTKLKQYKKYCAEKRIACGDLWEGEEHLFLFSTWNGRPLTPEKASTRWQYFTQKHGL 301

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
                 H LR + AT+LL+ G +L+ I   LGH  + TT  IY +V  +
Sbjct: 302 -RHIKLHGLRSTHATYLLTQGENLKVISERLGHSDIQTTMNIYAHVLEE 349


>gi|15804888|ref|NP_290929.1| tyrosine recombinase [Escherichia coli O157:H7 EDL933]
 gi|15834526|ref|NP_313299.1| tyrosine recombinase [Escherichia coli O157:H7 str. Sakai]
 gi|82546660|ref|YP_410607.1| tyrosine recombinase [Shigella boydii Sb227]
 gi|168749531|ref|ZP_02774553.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4113]
 gi|168754879|ref|ZP_02779886.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4401]
 gi|168760554|ref|ZP_02785561.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4501]
 gi|168766588|ref|ZP_02791595.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4486]
 gi|168773982|ref|ZP_02798989.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4196]
 gi|168782824|ref|ZP_02807831.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4076]
 gi|168784950|ref|ZP_02809957.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC869]
 gi|168797879|ref|ZP_02822886.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC508]
 gi|195937321|ref|ZP_03082703.1| tyrosine recombinase [Escherichia coli O157:H7 str. EC4024]
 gi|208805717|ref|ZP_03248054.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4206]
 gi|208813764|ref|ZP_03255093.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4045]
 gi|208821532|ref|ZP_03261852.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4042]
 gi|209398596|ref|YP_002273838.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4115]
 gi|217326621|ref|ZP_03442705.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. TW14588]
 gi|254796315|ref|YP_003081152.1| tyrosine recombinase [Escherichia coli O157:H7 str. TW14359]
 gi|261226671|ref|ZP_05940952.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256942|ref|ZP_05949475.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291285694|ref|YP_003502512.1| Type 1 fimbriae regulatory protein FimE [Escherichia coli O55:H7
           str. CB9615]
 gi|12519320|gb|AAG59495.1|AE005662_7 recombinase involved in phase variation; regulator for fimA
           [Escherichia coli O157:H7 str. EDL933]
 gi|13364750|dbj|BAB38695.1| type 1 fimbriae regulatory recombinase protein FimE [Escherichia
           coli O157:H7 str. Sakai]
 gi|81248071|gb|ABB68779.1| FimE [Shigella boydii Sb227]
 gi|187770271|gb|EDU34115.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4196]
 gi|188016166|gb|EDU54288.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4113]
 gi|188999765|gb|EDU68751.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4076]
 gi|189357927|gb|EDU76346.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4401]
 gi|189364101|gb|EDU82520.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4486]
 gi|189368977|gb|EDU87393.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4501]
 gi|189375139|gb|EDU93555.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC869]
 gi|189379521|gb|EDU97937.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC508]
 gi|208725518|gb|EDZ75119.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4206]
 gi|208735041|gb|EDZ83728.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4045]
 gi|208741655|gb|EDZ89337.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4042]
 gi|209159996|gb|ACI37429.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC4115]
 gi|209749368|gb|ACI72991.1| type 1 fimbriae regulatory recombinase protein FimE [Escherichia
           coli]
 gi|209749370|gb|ACI72992.1| type 1 fimbriae regulatory recombinase protein FimE [Escherichia
           coli]
 gi|209749372|gb|ACI72993.1| type 1 fimbriae regulatory recombinase protein FimE [Escherichia
           coli]
 gi|209749374|gb|ACI72994.1| type 1 fimbriae regulatory recombinase protein FimE [Escherichia
           coli]
 gi|209749376|gb|ACI72995.1| type 1 fimbriae regulatory recombinase protein FimE [Escherichia
           coli]
 gi|217322842|gb|EEC31266.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. TW14588]
 gi|254595715|gb|ACT75076.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O157:H7 str. TW14359]
 gi|290765567|gb|ADD59528.1| Type 1 fimbriae regulatory protein FimE [Escherichia coli O55:H7
           str. CB9615]
 gi|309704783|emb|CBJ04134.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli ETEC H10407]
 gi|320186174|gb|EFW60915.1| type 1 fimbriae regulatory protein FimE [Shigella flexneri CDC
           796-83]
 gi|320190573|gb|EFW65223.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. EC1212]
 gi|320639040|gb|EFX08686.1| tyrosine recombinase [Escherichia coli O157:H7 str. G5101]
 gi|320644409|gb|EFX13474.1| tyrosine recombinase [Escherichia coli O157:H- str. 493-89]
 gi|320649727|gb|EFX18251.1| tyrosine recombinase [Escherichia coli O157:H- str. H 2687]
 gi|320654775|gb|EFX22744.1| tyrosine recombinase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320660628|gb|EFX28089.1| tyrosine recombinase [Escherichia coli O55:H7 str. USDA 5905]
 gi|320665556|gb|EFX32602.1| tyrosine recombinase [Escherichia coli O157:H7 str. LSU-61]
 gi|326345375|gb|EGD69118.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. 1125]
 gi|326346770|gb|EGD70504.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7
           str. 1044]
 gi|332083284|gb|EGI88515.1| phage integrase family protein [Shigella boydii 5216-82]
 gi|332087140|gb|EGI92274.1| phage integrase family protein [Shigella boydii 3594-74]
          Length = 198

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 70/174 (40%), Gaps = 7/174 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R L  K+   ++  V    +       AR+  ++ L Y  G+RISE L L  Q++  ++ 
Sbjct: 5   RYLTGKEVQAMMQAVCYGAT------GARDYCLILLAYRHGMRISELLDLHYQDLDLNEG 58

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            + I+  K     + PL    R+A+  +          +    +F   RG  L+     R
Sbjct: 59  RINIRRLKNGFSTVHPLRFDEREAVERWTLERANWKGADRTDAIFISRRGSRLSRQQAYR 118

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            IR      G    T  H LRH+    L   G D R IQ  LGH  +  T  YT
Sbjct: 119 IIRDAGIEAGTVTQTHPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYT 172


>gi|160881628|ref|YP_001560596.1| integrase family protein [Clostridium phytofermentans ISDg]
 gi|160430294|gb|ABX43857.1| integrase family protein [Clostridium phytofermentans ISDg]
          Length = 443

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/325 (16%), Positives = 113/325 (34%), Gaps = 64/325 (19%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T++SYEC          +Y + ++  + I+ +    I+   +          ++      
Sbjct: 133 TVESYEC-------MYLYYVKPELGKRLIKDIRGEHIQKLYNDLSRNGYSKSTISLIHVL 185

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           + +  K   K ++  ++ +      +          E++ LTL +  +L        ++ 
Sbjct: 186 LGAMFKQALKNELIKKNPVDFTTLPRAERK-----KERRVLTLKEQEILLKEITGHELEP 240

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP---------- 204
               ++ L    GLR+ E   L   ++  ++  + ++G     R                
Sbjct: 241 ----VVRLSLATGLRVGEVTGLEWCDVDFNKKEVTVRGTLKCTRKGMEYYKDTPKTDKST 296

Query: 205 ------SVRKAILEYYDLCPFDLNL----------NIQLPLFRGIRGKPLNPGVFQRYIR 248
                    + +L+ Y +   +  L           ++  +F    GKP +    ++ + 
Sbjct: 297 RSIPLLDNMELMLKRYRIIQKEHKLSMGIDWKPIEGLEDLVFLREDGKPFSGQHIRQQLV 356

Query: 249 QLRRYLGLPLS-------------------TTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
            +    G+                       T H LRH+FAT  L NG   + +Q ILGH
Sbjct: 357 HIVD--GINEKYYSKKSIRQEKLLEEKFDYFTPHALRHTFATRALENGIPPKVVQEILGH 414

Query: 290 FRLSTT-QIYTNVNSKNGGDWMMEI 313
             ++ T  +YT+V  +     M ++
Sbjct: 415 SSITMTLDLYTHVLPQTKAQEMKKL 439


>gi|332885110|gb|EGK05362.1| hypothetical protein HMPREF9456_02861 [Dysgonomonas mossii DSM
           22836]
          Length = 414

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/311 (16%), Positives = 121/311 (38%), Gaps = 33/311 (10%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEI 71
                + +LQN+ + R  ++ T   Y+      L  L  +  +K  I  I  + L+ + +
Sbjct: 112 FEAHNEKFLQNVGVNR--AEGT---YKRFLTS-LDHLKRFMRKKYNISDIPFQALTSSFV 165

Query: 72  RAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
             +    R +  +   ++  ++  ++  +K      +  +   ++ + +     +P++L 
Sbjct: 166 ADYDYYLRIELGLACGTIINTIVHLRRIIKIAINNGLVRKDPFIDYKYI-TEEPVPKSLT 224

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             +   L+   L      ++        +       G+  S+  +LT +N+   +  ++ 
Sbjct: 225 SDELDILIKVKL------SRPNLNFIRDMFLFSSFTGIAFSDMRNLTAKNLSTAEDGIQW 278

Query: 191 ----QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
               + K      +PLL    + I  Y  +         +  LF  I     N      Y
Sbjct: 279 IHLNRKKTGAPCHIPLLEIPLQLIERYRGIA-------KEGKLFPMISCSKTN-----IY 326

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           ++++ +   +    T H  RH +A+ + LS G  L ++  +LGH    +T+IY  V++  
Sbjct: 327 LKRIAKECVINKRITFHMARHCYASVVTLSQGVPLETVAELLGHTDWRSTRIYAQVSNDK 386

Query: 306 GGDWMMEIYDQ 316
            G+ M  +  +
Sbjct: 387 IGEDMQSLNQR 397


>gi|223932143|ref|ZP_03624147.1| integrase family protein [Streptococcus suis 89/1591]
 gi|302023765|ref|ZP_07248976.1| site-specific tyrosine recombinase XerS [Streptococcus suis
           05HAS68]
 gi|330832797|ref|YP_004401622.1| integrase family protein [Streptococcus suis ST3]
 gi|223899124|gb|EEF65481.1| integrase family protein [Streptococcus suis 89/1591]
 gi|329307020|gb|AEB81436.1| integrase family protein [Streptococcus suis ST3]
          Length = 356

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 67/353 (18%), Positives = 126/353 (35%), Gaps = 50/353 (14%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE------EK 57
           + L EI+ + +L+  Q+ L         S  TL  Y  + R+F  +L             
Sbjct: 11  DQLKEIMPWFVLEYYQSKLAVP-----YSFTTLYEYLKEYRRFFEWLQDSDLVSVERIAD 65

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQ----------KIGDRSLKRSLSGIKSFLKYLKKRKI 107
           I +  +  L+  ++ AFI   R +           +   ++ R+LS + S  KYL +   
Sbjct: 66  IPLDILEHLTKKDMEAFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLFKYLTEEVE 125

Query: 108 TTESNILNMRNLKKSNSLP--------RALNEKQALTLVDNVL--LHTSHETKWIDARNS 157
             +      RN+ K  S          RA N KQ L L D  +  L    +   ++    
Sbjct: 126 NEQGEPYFYRNVMKKVSTKKKKETLAARAENIKQKLFLGDETMEFLDYVDKEYQVNLSKR 185

Query: 158 AILYL-------------LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           A+                L   G+R+SEA++L  +++  +   + +  KG K   V +  
Sbjct: 186 ALSSFQKNKERDLAILALLLASGVRLSEAVNLDLRDVNLNMMIIEVTRKGGKRDSVNVAG 245

Query: 205 SVRKAILEYYDLCPFDLNL-NIQLPLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLST 260
             +  +  Y  +              F          ++    ++ + +        +  
Sbjct: 246 FAKPYLEAYMSIRQQRYKAEKTDTAFFLSEYRGLPNRIDASSIEKMVAKYS--ADFKIRV 303

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           T H LRH+ AT L         +   LGH     T +YT++ +    + + ++
Sbjct: 304 TPHKLRHTLATRLYDATKSQVLVSHQLGHANTQVTDLYTHIVNDEQKNALDQL 356


>gi|319936580|ref|ZP_08010994.1| hypothetical protein HMPREF9488_01827 [Coprobacillus sp. 29_1]
 gi|319808378|gb|EFW04938.1| hypothetical protein HMPREF9488_01827 [Coprobacillus sp. 29_1]
          Length = 283

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 57/304 (18%), Positives = 114/304 (37%), Gaps = 39/304 (12%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           LK  +++   L IE   S  T+  Y  D + F  +L             + ++   + ++
Sbjct: 8   LKNIESFKTEL-IEEEKSTATINKYIRDIQTFYNYLQED----------KTITKECVVSY 56

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL----PRALN 130
             K   +    RS+   L  +  F  +L             ++  K   S+     + + 
Sbjct: 57  KLKLAKE-YRPRSVNSMLVALNRFFVFLNI-------PECQVKLNKIQKSVFGDDNKEMT 108

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           +++   L+       +            I+  +   G+R+SE   +T   +   ++ +  
Sbjct: 109 KEEYKRLLFAAKSKNNERL-------YMIIQTICATGIRVSEHKYITVDALKKGRAVIIN 161

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +GK   +R + L   +++ +L Y              P+F    GKP++       ++ L
Sbjct: 162 KGK---VREIILPIELKRLLLNYCKKQNI-----KCGPIFVTKGGKPMDRSNIWSSMKSL 213

Query: 251 RRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                +       H LRH FA        DL ++ S+LGH  + TT+IYT  + KN    
Sbjct: 214 CEDARVDSQKVFPHNLRHLFAITYYQLEKDLDTLASLLGHTSIDTTRIYTMKSGKNCLRS 273

Query: 310 MMEI 313
           + ++
Sbjct: 274 LSKM 277


>gi|288801474|ref|ZP_06406926.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331555|gb|EFC70041.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 397

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 62/288 (21%), Positives = 114/288 (39%), Gaps = 30/288 (10%)

Query: 37  QSYEC-DT--RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
            +Y   D   R F  FL        T     +L+   I  F    RT  I  +S   ++ 
Sbjct: 106 ANYRKFDICKRHFTHFLEIKYAR--TDLNAIELTPIVIHDFDVYLRT--IVGQSFNTAIK 161

Query: 94  GIKSF---LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +K+F   + + +K  +      LN+   K        L +++  T++           +
Sbjct: 162 TLKTFKTVIIFGRKAGVFNHDPFLNIH-FKTKRVDRGFLTDEEIDTIMHKEFA----TQR 216

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRK 208
            ++ R+  +       GL   +  +LT  NI  MD +  +    K        LL  + K
Sbjct: 217 LVNVRDIFLFSCF--TGLAYVDVANLTADNIITMDGKQWIVTARKKTDTLSHILLLDIPK 274

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            I+E Y  C  +           G     L+      Y++++    G+  + T H  RH+
Sbjct: 275 MIIEKYAGCAKN-----------GRLIPILSNQRMNSYLKEIADVCGINKNLTFHMARHT 323

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           FAT +L+ G  + S+  +LGH  ++TTQ+Y  + +K   + M+ +  +
Sbjct: 324 FATMMLTKGVPVESVSKMLGHSSITTTQLYARITNKKIENDMLMVSRK 371


>gi|228961935|ref|ZP_04123475.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228797758|gb|EEM44831.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 369

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 58/315 (18%), Positives = 117/315 (37%), Gaps = 39/315 (12%)

Query: 18  RQNWLQNLEIERGLS--KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            +++L +    + +S  K T   Y+        F+  +    I + T+ +L+   I+   
Sbjct: 65  LKDYLNHWLEIKSMSIEKSTFAGYK-------AFINQHVIPSIGMVTLHKLNVIHIQKCY 117

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                + I + S+      +KS L    K+ I + +        KK  +  +   E++  
Sbjct: 118 KTAIDKGIANNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKTPIQTWTEEEVK 177

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
             + +     S E+++      AI       G+R+ E L L  Q+I  ++ T+ I     
Sbjct: 178 KFLAH-----SQESRYHIGYLLAI-----TTGMRLGEVLGLRWQDIDFEKHTVTINQTSG 227

Query: 196 KI-------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-----FRGIRGKP 237
                          R +P+      A+ ++  L   +        L          G+ 
Sbjct: 228 HDNKIKKTAKTNSSKRTIPVPNETIAALKKHKILINKEKLKFGSAYLDQDLINCNEFGRI 287

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
           +    F++   ++   +G+      H LRH+ AT LL  G + + I   LGH  +S T  
Sbjct: 288 IKRAHFRKSFIRMTHKVGI-KEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLS 346

Query: 297 IYTNVNSKNGGDWMM 311
           +Y++V      + + 
Sbjct: 347 VYSHVLPNMQEEAVK 361


>gi|320324390|gb|EFW80469.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. glycinea str. B076]
          Length = 281

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 54/250 (21%), Positives = 105/250 (42%), Gaps = 11/250 (4%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
            I       L    + A ++  R       +    ++ I+  +    +  + +   +L +
Sbjct: 18  DIHDIPWHTLQPGHVTALVATLREDDYAPNTTSLYVNAIRGVMNEAWRHDLISHEQLLKI 77

Query: 117 RNLKK--SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           R++K      L +  N +   TL+  ++   + + +    R++AI+ +LYG G+R SE++
Sbjct: 78  RSIKPVSGTRLAKGRNIR--RTLIRELMEACAADPRPQGRRDAAIIAILYGSGMRKSESV 135

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---R 231
           +L    I   + +LR+ GKG+K  I        KA+ ++ +L    L        F   R
Sbjct: 136 NLDLSQIDFAERSLRVLGKGNKQLIKYAPEWAFKALNDWLELRRSCLQPGQGDDPFLFNR 195

Query: 232 GIRGKPLNP-GVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
             RG  +    + +  I  + +  G  + ++   H  R SF T ++    DL   Q +  
Sbjct: 196 IRRGSHITRDRITKHAIYFIAKQRGRQVGVNIMPHDFRRSFITRVIEE-FDLSIAQKLAH 254

Query: 289 HFRLSTTQIY 298
           H  +STT  Y
Sbjct: 255 HTHISTTASY 264


>gi|260592892|ref|ZP_05858350.1| site-specific recombinase, phage integrase family [Prevotella
           veroralis F0319]
 gi|260535181|gb|EEX17798.1| site-specific recombinase, phage integrase family [Prevotella
           veroralis F0319]
          Length = 267

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 107/299 (35%), Gaps = 39/299 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++   L  E  +++ T+ +Y      +        +  + +          I  F   
Sbjct: 2   VESFKTALR-ESNMAENTISAYVYAVNDYFSKHKTLNKRNLLL-----YKANIIEQF--- 52

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNEKQAL 135
                   +++   +  +  FL+++ K         L ++++K      L   ++  QA 
Sbjct: 53  ------RPKTVNLRIQALNKFLEHVGK-------PKLRLKSVKVQQRSYLENVIS--QAD 97

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            +     L       W       ++  L   G R+SE + +  +++        I  KG 
Sbjct: 98  YIFFKKKLKQEESLMW-----YFVVRFLTATGARVSELIQIKVEHVRI--GYFDIYSKGG 150

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K+R + +   +R    ++     F+        +FR   G+ +      + ++      G
Sbjct: 151 KVRRLFIPRHLRDEAEKW-----FEETQQTTGYIFRNRFGERITTRGIAQQLKNYAERYG 205

Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           L  +    H+ RH +A + L    D+  +  ++GH  + TT+IY    +      + ++
Sbjct: 206 LNTNVVYPHSFRHRYAKNFLEAFNDIALLADLMGHESIETTRIYLRRTACEQQAIVDKV 264


>gi|330503525|ref|YP_004380394.1| phage integrase family protein [Pseudomonas mendocina NK-01]
 gi|328917811|gb|AEB58642.1| phage integrase family protein [Pseudomonas mendocina NK-01]
          Length = 329

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 95/236 (40%), Gaps = 26/236 (11%)

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQA 134
           S+     I  +++   L  +K+    L +       + ++N+R L+        L+  Q 
Sbjct: 110 SELLKAGIQGKTMNNRLGYLKALFNELHRLGDIDYPNPLVNVRPLRLQERPISFLSTCQI 169

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D +   T+     +      I  +    G R  EA +LTP+ + +   T     K 
Sbjct: 170 AELLDALDDRTTSPGIGL------IARVCLSTGARWGEAQALTPERVRNGMVTF-ANTKS 222

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            + R +P+   + KA+  Y+              LF            F R + +     
Sbjct: 223 KRTRSIPIDRELEKALQIYFKRHG----------LFTNCML------TFSRVLDKTSIK- 265

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            LP     H LRH+FA+H +  GG++ ++Q ILGH  L+ T  Y +++  +  D +
Sbjct: 266 -LPAGQATHVLRHTFASHFVMRGGNILTLQKILGHTSLAMTMRYAHLSPDHLQDAL 320


>gi|322507324|gb|ADX02778.1| intI [Acinetobacter baumannii 1656-2]
          Length = 319

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 104/285 (36%), Gaps = 64/285 (22%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVNWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
                +     F  + +   P    +R   +    FQR  ++   
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVE 266


>gi|200388241|ref|ZP_03214853.1| integrase [Salmonella enterica subsp. enterica serovar Virchow str.
           SL491]
 gi|9944851|gb|AAG03003.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|199605339|gb|EDZ03884.1| integrase [Salmonella enterica subsp. enterica serovar Virchow str.
           SL491]
 gi|239842528|gb|ACS32045.1| integrase [Salmonella enterica subsp. enterica]
 gi|260667576|gb|ACX47954.1| integrase [Salmonella enterica subsp. enterica serovar Kentucky]
          Length = 405

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/289 (17%), Positives = 102/289 (35%), Gaps = 38/289 (13%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK----RRTQKIGDRSLKRSL 92
            +Y           +++   ++T + I +      R ++ +    +   K+   +     
Sbjct: 112 SNYSIWISAGKHLRSYHGRAELTFEEIDKKFLEGFRKYLLEEPLTKSQSKLAKNTASSYF 171

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           + +++ L    +  I  ++ +  ++++K  N+    L   +   +           TK  
Sbjct: 172 NKVRAALNEAFREGIIRDNPVQRVKSVKAENTQRTYLTLDEVRAM-----------TKAE 220

Query: 153 DARNSAILYLLYGC--GLRISEALSLTP-QNIMDDQSTLRIQGK-------GDKIRIVPL 202
              +      L+ C  GLR S+   LT  +         RI  K       G+ +  + L
Sbjct: 221 CRYDVLKRAFLFSCTTGLRWSDIQKLTWKEIEEFQDGHYRIIFKQAKLLNAGNSLVYLDL 280

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
             S  K + E  D             +F+G++            +       G+    T 
Sbjct: 281 PDSAVKLMGERQDKAER---------VFKGLKYSSYT----NVALLHWAMLAGVQKHVTF 327

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           H  RH+FA   L+ G D+ S+  +LGH  L TT+IY ++        M 
Sbjct: 328 HVGRHTFAVAQLNRGVDIYSLSRLLGHSELRTTEIYADILESRRVTAMR 376


>gi|296393307|ref|YP_003658191.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296180454|gb|ADG97360.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 370

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 54/285 (18%), Positives = 100/285 (35%), Gaps = 37/285 (12%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
                E +     I  +   ++  +I++ RTQ +   S+ R+   +   L    K +   
Sbjct: 92  WRARVEPEWGAVRISDVEQVDVERWIARLRTQNLSATSVLRAHQTLAGVLDLAVKSRRLA 151

Query: 110 ESNILNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
            +    +  L +    PR   +  Q  +L D    H              ++ LL   G 
Sbjct: 152 SNPARGIDGLPRKVRKPRTYFSTDQLHSLADESKGH------------RTLVLLLGTMGP 199

Query: 169 RISEALSLTPQNIMDDQSTLRIQG---------------KGDKIRIVPLLPSVRKAILEY 213
           R  E + L   +    +  + I+                KG + R VP+ P +   +   
Sbjct: 200 RWGETVGLQVGDCDFLRRRVHIRRNAVQLGGGQIVVGTPKGHEDRWVPIPPFLLDDLARQ 259

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-YIRQLRRYLGLPLSTTAHTLRHSFATH 272
            +    D        +F    G  L     +  +     R  GLP   T H LRH+ A+ 
Sbjct: 260 CEGKKRD------DLVFPARGGGFLKRPYAESGWFDGALRRAGLPR-VTPHDLRHTAASI 312

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            +SNG ++ ++  +LGH    T ++Y ++   +  D + E     
Sbjct: 313 AVSNGANILALARMLGHDPAMTLKVYADLFDADL-DAVAEAVSAA 356


>gi|187734150|ref|YP_001880474.1| integrase [Shigella boydii CDC 3083-94]
 gi|187431142|gb|ACD10416.1| integrase [Shigella boydii CDC 3083-94]
          Length = 375

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 101/257 (39%), Gaps = 29/257 (11%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNIL 114
           E +    + +L+ T +      R  Q I   ++ R +  + +    L        ++ + 
Sbjct: 140 EAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAMFTALISSGHFLNDNPVQ 199

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            ++ +K        L++ + + L+D  L     E           + +L   G R  E  
Sbjct: 200 GLKGMKVKEREMGYLSKSECVQLLDA-LAENPDE--------RLAVEILLSTGARWGEVA 250

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +L  + ++  + T   + K  K R VP+  S+ + I                  +F    
Sbjct: 251 ALEQRRVLHCRITFS-KTKNSKNRTVPISESLFEKI-----------KKRGGKLVFPT-- 296

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              L+  + +  I+ +     +P     H L H+FA+H + NGG++ ++Q ILGH ++ T
Sbjct: 297 ---LDYSLVRDVIKTVA--PDVPDGQAVHALHHTFASHFMMNGGNILTLQKILGHAKIQT 351

Query: 295 TQIYTNVNSKNGGDWMM 311
           T IY ++      D + 
Sbjct: 352 TMIYAHLAPDYLQDAVR 368


>gi|120603820|ref|YP_968220.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
 gi|120564049|gb|ABM29793.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
          Length = 356

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 59/287 (20%), Positives = 114/287 (39%), Gaps = 34/287 (11%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK--- 89
           + T  +      +   FL  +    ++   +  L YT+I A       +K G+R+L    
Sbjct: 75  RKTAGASRRWLIEITGFLNNHILPALSTTPLDNLRYTDIIA----LVDKKWGNRTLATRQ 130

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R L  +K+  ++  +   T  + +   R  K+        N +  L  ++ +L H +   
Sbjct: 131 RYLGYLKALFRFGVEHGFTKNNPLSKWRKTKEPKR-----NLRLTLEGLELILAHAAPHL 185

Query: 150 KWIDARNSAILYLLYGCGLRIS--EALSLTPQNIMDDQSTLRIQGKGDKI--RIVPLLPS 205
           +W        L + +  G R    E   L   ++  ++ T+ ++G       R +P++P 
Sbjct: 186 RWA-------LEVEWEIGTRPGPTELFDLKWDDVDFERCTILVRGTKTHEANRTLPIMPE 238

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            R  + +              +  ++G     +N       +R   R  GLP     + +
Sbjct: 239 FRDRLQK-----VMREQGGEYIITYKGKPVLRMNT-----ALRGACRRAGLPYHVRMYDI 288

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMM 311
           RH FAT +L+NG DL ++  +LGH  ++TTQ  Y +V        + 
Sbjct: 289 RHLFATVMLANGSDLAAVSKLLGHSTIATTQAHYYHVLKGEMSRALA 335


>gi|158340210|ref|YP_001521380.1| phage integrase [Acaryochloris marina MBIC11017]
 gi|158310451|gb|ABW32066.1| phage integrase [Acaryochloris marina MBIC11017]
          Length = 551

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 55/296 (18%), Positives = 109/296 (36%), Gaps = 35/296 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q +L+N      LS  + + YE + ++FL +  F             L+   +  +   
Sbjct: 50  VQEFLRN----SNLSPNSQKLYERELKRFLGWTHFR---------WSDLTLRHLGQYKVY 96

Query: 78  RRT------QKIGDRSLKRSLSGIKSFLKY--LKKRKITTESNILNMRNLKKSNSLPRAL 129
                    + +   SL  +L+ +KSF K+      ++   +    ++  K      + L
Sbjct: 97  LMELKVAEGKTLSKNSLNSALTALKSFFKWLTQFHPELCPTNPTKGVKFEKVPLPPAQNL 156

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
             ++   + D        + +    R+ A++ LL    LR  E ++    +      ++ 
Sbjct: 157 TPEEMTRVWD-----AITQREQTQLRDLALVQLLSHN-LRAGEVVTANVGSFDGRLISIT 210

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN--LNIQLPLFRGIRG----KPLNPGVF 243
            + K ++ R+VPL    ++ + EY D         L+ + PL          + L+    
Sbjct: 211 -KTKNNQPRLVPLSTEGQQVVQEYLDWRKDQQGEALSAESPLILSHHQGWEGQRLSYHGV 269

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
              +  + R   LP     H  RH+ AT  L  G D    + + GH    + + YT
Sbjct: 270 YFAVEDIGRLAELP-DLHPHQFRHTSATEYLRMGLDPAHARRLTGHTDERSFRRYT 324


>gi|146301359|ref|YP_001195950.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146155777|gb|ABQ06631.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 305

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 62/276 (22%), Positives = 114/276 (41%), Gaps = 31/276 (11%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-------IGDRSLKRS 91
           Y     +FLI+L     E+  +  ++ ++  E   ++     +        + ++++K  
Sbjct: 34  YRNIITEFLIWL-----EQAGVSRMQNVTSKESVKYLEYLTARPKKRGNGVLAEKTIKLH 88

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L     F  YL + K     NI  + ++      PR +   + + LV             
Sbjct: 89  LFVQGLFQVYLLENKEIQ--NIYYIPSVSGETQKPRNILTIEEIKLVYQY---------A 137

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAI 210
            +    A+L + YGCGLR SE  +L  +++   +  + ++ GKG+K R VP+  +V + +
Sbjct: 138 ENEMEKALLSIAYGCGLRRSEIANLDLKDVSLIKGMIVVRQGKGNKRREVPMSDTVLEYL 197

Query: 211 LEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG----LPLSTTAH 263
            +Y      +        +   F   RG+          + ++    G    +    T H
Sbjct: 198 KKYIRNERPERLSGRNQNEEAFFINSRGRRSTGENLNEILSKMIEQTGKFELVQKEITLH 257

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            LRHS A HL  N   +  I+S LGH +++TT IY 
Sbjct: 258 CLRHSIAFHLAENNAGIDFIRSFLGHTQINTTYIYA 293


>gi|167464469|ref|ZP_02329558.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 379

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 57/300 (19%), Positives = 106/300 (35%), Gaps = 38/300 (12%)

Query: 33  KLTLQSYE---CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           + TL+ YE       Q + F+  + +  I    +  L+   ++ F +  R +  G   ++
Sbjct: 86  ENTLK-YEVAPNTYEQRMTFVKNHIQPNIGSLRLTDLTPNHVQKFYNSLR-EHYGAGYVQ 143

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNEKQALTLVDNVLLHTSH 147
              + +        K  + + + I  ++    S      +    +     +D        
Sbjct: 144 NIGNLLSKAFTQAVKWNMISRNPIPLVKKPSLSRKNTKMKTWTVEDQRKFLDY------- 196

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---------------- 191
             K        I  L    G+R  E L L   ++   +  + I+                
Sbjct: 197 -AKDGPKLYYVIFLLALTSGMRKGELLGLIWDDVDTKKGIVSIKRTIVYAQRKLYLKDMP 255

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQL 250
                IR + L     K + ++   CP     N    LF   + K  L P    + + + 
Sbjct: 256 KTESAIRTIQLPEPTIKVMKQWKLECP----ANELNLLFPSPKTKGILYPNSLDKQLAKT 311

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDW 309
            +  G+P   T H LRH+FAT LL +  + + +Q +LGH  + TT   Y++V      D 
Sbjct: 312 IKGAGVP-EITMHGLRHTFATTLLGSNVNPKIVQEMLGHATIKTTMDTYSHVLPNMQKDA 370


>gi|228956429|ref|ZP_04118237.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|228803247|gb|EEM50058.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
          Length = 322

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 63/312 (20%), Positives = 120/312 (38%), Gaps = 22/312 (7%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           VS E     +++L   + + G +  TL+ Y  D R  L  +  + E K     + +L+  
Sbjct: 17  VSQENKNLVKDFLIEKKAQ-GKAASTLKQYGWDLRIILFLIHQHFENK----NLTELTRK 71

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRN-LKKSNSLP 126
           +IR      +   + +  +   +S ++S L++           +    +R   K      
Sbjct: 72  DIRNLSIIFQEMGMSNARVNGLMSALRSALEFCADDDDYEYEFNVGSRVRGLPKNPIREI 131

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             +N+ Q   L+D +L              +  L L Y    R +E   +  + + +   
Sbjct: 132 TFINDDQINWLIDELLEKEK-------YMLATYLTLSYYSAARKNEVYQVQKEGLTEQYY 184

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           T  ++GK  K   +   P V+K I  Y D    D   ++ + +++    + LN  VF  +
Sbjct: 185 TNVVRGKRGKKFRLYYNPRVQKCIRLYIDQRGKDAIPDLFVRVYKNGERRQLNKSVFNYW 244

Query: 247 IRQLRRYL----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +   + L    G       H  RHS   +L   G  L  ++S+  H  +STT+ Y    
Sbjct: 245 CKIFAKMLNEKEGKEFKVNPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTESYLK-- 302

Query: 303 SKNGGDWMMEIY 314
                + + EI+
Sbjct: 303 -DRSEEDIAEIF 313


>gi|91786615|ref|YP_547567.1| phage integrase [Polaromonas sp. JS666]
 gi|91695840|gb|ABE42669.1| phage integrase [Polaromonas sp. JS666]
          Length = 311

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 93/257 (36%), Gaps = 20/257 (7%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           + ++    +RAF+          R        +  F ++   R   +   +         
Sbjct: 40  VDRIGPESVRAFLD---GNGPMTRYWHCKFGTLAGFYRFCLARGYVSSVPLPTTEPRCPQ 96

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
              P   +E +   L+         +     +     L LLY  GLRISEAL+L   ++ 
Sbjct: 97  TFTPYIYSEDEIKRLLQAAAGRAFCKIDAHTS--RTQLLLLYATGLRISEALNLNLADVD 154

Query: 183 DDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
            +   L ++  K  K R+VP+   + + + EY         L+   P     RG+ ++  
Sbjct: 155 LNDRVLYVRRSKFYKTRLVPIGTDLTQVLREYARRRYKRSPLDPDAPFLLTSRGERVSRA 214

Query: 242 VFQRYIRQLRRYLGLPLS------TTAHTLRHSFA----THLLSNGGD----LRSIQSIL 287
             ++  RQ+R    +            H LRH+ A          G D    L  + + L
Sbjct: 215 GAEQAFRQMRSQAKVRRHDGGRYQPRLHDLRHTAAVTRLVRWYREGVDVQRLLPQLATYL 274

Query: 288 GHFRLSTTQIYTNVNSK 304
           GH  +S TQ Y ++  +
Sbjct: 275 GHVHISGTQCYLSMTPE 291


>gi|237710855|ref|ZP_04541336.1| transposase [Bacteroides sp. 9_1_42FAA]
 gi|237725667|ref|ZP_04556148.1| transposase [Bacteroides sp. D4]
 gi|298385294|ref|ZP_06994853.1| integrase [Bacteroides sp. 1_1_14]
 gi|317474053|ref|ZP_07933332.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|229435475|gb|EEO45552.1| transposase [Bacteroides dorei 5_1_36/D4]
 gi|229454699|gb|EEO60420.1| transposase [Bacteroides sp. 9_1_42FAA]
 gi|298262438|gb|EFI05303.1| integrase [Bacteroides sp. 1_1_14]
 gi|316909895|gb|EFV31570.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 409

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 61/269 (22%), Positives = 113/269 (42%), Gaps = 25/269 (9%)

Query: 50  LAFYTEEKITIQTIR--QLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRK 106
           L  +  +K  ++ I    L+   IR + S    +    +++ +  L+ +K   +   K  
Sbjct: 144 LGEFVRKKYKVKDIAFGALNEQFIREYQSYIEVKCGYSNQTSRHHLALLKRICRIAYKEG 203

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
            +   + L+ +  K+  + P+AL+ +    L D   L    + + +       L+  Y  
Sbjct: 204 FSERYHFLHFKIPKQKETTPKALSREDFEKLRD---LEIPEKRRSLVLTRDLFLFACYA- 259

Query: 167 GLRISEALSLTPQNIM-DDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           G   ++ +S+T +N+  DD+ +L +   + K +    V LLP     I +Y D       
Sbjct: 260 GTAYADTISITRENLFTDDEGSLWLKYRRKKNELTARVKLLPEAIALIEKYRD------- 312

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLR 281
            +++  LF             +  ++ LR   GL      H  RHSFA+ + L  G  + 
Sbjct: 313 -DLRETLFPNQLY-----STLRANMKILRVLAGLTTELVYHMGRHSFASLVTLEEGVPIE 366

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           +I  +LGH  + TTQIY  V  K   + M
Sbjct: 367 TISKMLGHNNIKTTQIYARVTPKKLFEDM 395


>gi|21221683|ref|NP_627462.1| integrase [Streptomyces coelicolor A3(2)]
 gi|4490997|emb|CAB38894.1| putative integrase [Streptomyces coelicolor A3(2)]
          Length = 384

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 61/321 (19%), Positives = 115/321 (35%), Gaps = 42/321 (13%)

Query: 11  SFELLKERQNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           S +L +    WL N ++  R LS  T   YE   R +L+ L       +  + +  L   
Sbjct: 70  SAKLSEWMPYWLDNVIKPRRKLS--TYDKYEAHVRLYLVPL-------LGAKRLESLGVA 120

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++R F+ +   +     + K S   ++S L    + ++ T +    +   +  +   +  
Sbjct: 121 DVRRFLVRLEKETTAA-TAKESHRVLRSALTSACREELITRNVAKLVEPPRTDSRELKPW 179

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              + L  +       +     +     A   L    GLR  E + L   ++  D   L 
Sbjct: 180 TLDETLDFL------AASRKDPL----YAAFVLAIAMGLRRGEIIGLRWSDLDLDNRVLY 229

Query: 190 IQGKGDKIRIVPLL-------------PSVRKAILEYYDLCPFDLN------LNIQLPLF 230
           ++ +  + R V                P++  A L ++ +                  +F
Sbjct: 230 VRQQTQRRRGVLYDDDPKSRRRRAVPLPALCIAPLRWHRMRQAAARIKAGEQWQESGYVF 289

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
               G+ + P    R   ++    GL +    H  RH  AT L + G   R +  ILGH 
Sbjct: 290 TTRTGRQVEPRNVYRSFTRVAESAGLRV-IRLHDARHGTATLLTAAGVAPRVVMEILGHS 348

Query: 291 RLSTTQ-IYTNVNSKNGGDWM 310
           ++S T  +YT+V      + M
Sbjct: 349 QISITMDVYTHVVQDTQREAM 369


>gi|269216376|ref|ZP_06160230.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Slackia exigua ATCC 700122]
 gi|269130635|gb|EEZ61713.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Slackia exigua ATCC 700122]
          Length = 452

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 69/354 (19%), Positives = 127/354 (35%), Gaps = 70/354 (19%)

Query: 8   EIVSFELLKERQNWLQN-------LEIER-----GLSKLTLQSYECDT--RQFLIFLAFY 53
           E    EL  E  N+ +        L  ER     G S LTL+    D   R+        
Sbjct: 53  ETYRHELESEVGNFEEYTVGAYARLWHERRVDSGGYSPLTLKD--DDLQVRKIEALWGGT 110

Query: 54  TEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI 113
             E +T + I           ++ R   +     +  +LS +   + +    ++   +  
Sbjct: 111 LLENLTAKKIS----AAYDRLLANREASRNAIHKINGTLSLV---MDHAVANELVEANPC 163

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
             ++  +      +AL+++QAL L   + L T  +T      N+  +++    G+R  E 
Sbjct: 164 NLVKAPRPKPKERKALSDEQALEL--AMALRTEKQTG-----NTVAVWIALATGMRRGEI 216

Query: 174 LSLTPQNIMDDQS------------TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD- 220
           + L  +N+  D+             T+R        R + +       + E+      D 
Sbjct: 217 IGLVWRNVDFDRRRVYVGQQYAADHTIRDPKSEKSHRWLGIDNGTVTFLAEWKARQARDM 276

Query: 221 ----LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP------------------- 257
               L+ + + P+      + ++P  F R+ RQ     GL                    
Sbjct: 277 EVQGLDQSGETPVCTNSVFQFMDPNTFNRWRRQYFAEHGLGEFGPSVQYTDSQGRKRWRK 336

Query: 258 ---LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGG 307
              +    H LRH+ AT L+ +G D+++ Q  LGH   S T  IY +  ++N  
Sbjct: 337 GAYVGYNLHELRHTQATLLIGSGADIKTAQQRLGHSSASLTMDIYAHFIAQNDR 390


>gi|229142394|ref|ZP_04270908.1| Phage integrase [Bacillus cereus BDRD-ST26]
 gi|228641059|gb|EEK97376.1| Phage integrase [Bacillus cereus BDRD-ST26]
          Length = 253

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 22/245 (8%)

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQA 134
            + ++K    +L+R  + ++ FLKY+      +++    ++ +  KK   + R L  ++ 
Sbjct: 6   YQLSKKYAATTLRRKKTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLFPEEV 65

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRI 190
             ++D          K  +    ++ +LL   GLRI E  +    +       +   LR+
Sbjct: 66  NEILD--------TLKKTNFFMYSLFFLLTTTGLRIEEVANAKWADLAFHPSLNVYLLRV 117

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPF--DLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            GKG+K R V +   V   +     L     +L+ +          G         +Y+ 
Sbjct: 118 VGKGNKTREVRIFEDVLNDLCRLRQLRKQTSELDASSSSAFLPKADGSHYRADYLSKYVA 177

Query: 249 QLRRYLGLPL------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           +      LP         T HT RH FA HL+  G +L+ I+  LGH  + TT+ Y    
Sbjct: 178 EKIEETNLPFLRYRKDRITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLRER 237

Query: 303 SKNGG 307
           ++   
Sbjct: 238 TRRQN 242


>gi|282917374|ref|ZP_06325128.1| hypothetical protein SATG_02589 [Staphylococcus aureus subsp.
           aureus D139]
 gi|282318726|gb|EFB49082.1| hypothetical protein SATG_02589 [Staphylococcus aureus subsp.
           aureus D139]
          Length = 390

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/313 (15%), Positives = 104/313 (33%), Gaps = 43/313 (13%)

Query: 36  LQSYECDTR----QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           +  Y  D +    +       +  E+   + I+ +   + + F++    Q      +   
Sbjct: 72  ISQYANDVKVSSVRAREKAIHHAIERFNNKPIQTIKKHDYQRFVNDISIQ-YSKNYVDSI 130

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL---------PRALNEKQALTLVDNVL 142
           ++      KY    K+        ++  KK  S+          + L + +    ++   
Sbjct: 131 VTSTNMIFKYAYDMKLIRIMPSEGIKRPKKKVSVEELEDTEIHKKFLEKDELFQFLEIAK 190

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-- 200
            H S +  +       +   L   G+R  E L+L   +I  + +T+ I            
Sbjct: 191 NHHSPQNSFE------VFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNNNKK 244

Query: 201 ----------------PLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPG 241
                           P+ P V K +  Y           + +    +F  + G PL   
Sbjct: 245 QYQILTPKTESSIGKIPVDPHVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYPLVIK 304

Query: 242 VFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYT 299
             Q +I+ + +   +     + H+ RH+    L+  G  ++ IQ  L H  ++TT  IY 
Sbjct: 305 KLQLWIKVILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYA 364

Query: 300 NVNSKNGGDWMME 312
            + +    D   +
Sbjct: 365 KITNSYKKDASQK 377


>gi|255012810|ref|ZP_05284936.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 406

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 59/286 (20%), Positives = 116/286 (40%), Gaps = 26/286 (9%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSLKRSL 92
            T+Q YE  TR    F+    E +++   +  L    I  F +  +  +     S    L
Sbjct: 132 KTVQRYETTTRYLEEFIK--KEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSAITRL 189

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +K  ++   +     +      R  K   + P  L   +       ++L      K +
Sbjct: 190 KNLKKIIRIALENDWIKKDPFAYYR-FKLEETDPEFLTMDEIK-----IILAKEFTIKRV 243

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQG---KGDKIRIVPLLPSVRK 208
           +      ++ ++  GL  S+   L+P++++ D++  L I+    K   +  +P+LP    
Sbjct: 244 EQVRDVFVFCIF-TGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAAS 302

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            + +Y D+      L   LP+    R           Y++++    G+  + + HT RHS
Sbjct: 303 ILDKYKDVVECTGKL---LPVLCNQRM--------NSYLKEIADVCGIHKNLSTHTARHS 351

Query: 269 FAT-HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +AT   L+NG  + ++  +LGH   S T+ Y  V  +N    M ++
Sbjct: 352 YATSICLANGVSMENVAKMLGHADTSVTKHYARVLDQNIFKDMQKV 397


>gi|218533191|ref|YP_002424007.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218533206|ref|YP_002424022.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218525494|gb|ACK86079.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218525509|gb|ACK86094.1| integrase family protein [Methylobacterium chloromethanicum CM4]
          Length = 354

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/309 (17%), Positives = 105/309 (33%), Gaps = 33/309 (10%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           ++      +  + + Q    E  +   TL SY  ++R                  + +++
Sbjct: 52  DVPRHRFEEAVERYFQ----ETRVRPKTLSSYRSNSRTLAP--------SFNALHLDEIT 99

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSL 125
              I  F++ R+   + D +++R L+ +        +      + +     R L++    
Sbjct: 100 RRAIAEFVTARKRTGVTDTTIRRDLAFLSVICSACGRWGWLDTNPVTTFGKRGLREGRPR 159

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
            R L + +   L+                     + L    G+R  E   LT   I  ++
Sbjct: 160 TRFLTQAEFDRLL-----------AAASPSLRPAITLAVETGMRREELFGLTITAIDLNR 208

Query: 186 STLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
             + + + K    R VPL       I    D    +        LF    G        +
Sbjct: 209 REVHLERTKTGSPRRVPLSDKAITTIKGLLD----EPGRPRSSYLFCKGDGSRYCD--MK 262

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +      R   +  +   H LRH+FA+  +  GGDL  +  ILGH  L  T  Y ++  +
Sbjct: 263 KGFGGACRRAKVT-NMRWHDLRHTFASWYVQRGGDLYRLSRILGHSGLQMTARYGHLRVE 321

Query: 305 NGGDWMMEI 313
           +  + +  +
Sbjct: 322 DLHEEIGRV 330


>gi|187932650|ref|YP_001885119.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium botulinum B str. Eklund 17B]
 gi|187720803|gb|ACD22024.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium botulinum B str. Eklund 17B]
          Length = 386

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 61/339 (17%), Positives = 121/339 (35%), Gaps = 44/339 (12%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           + N L +     L    + WL++  ++   S+ T   Y+    +++         ++ + 
Sbjct: 49  QNNGLLKPKEILLKDYLKIWLEDY-VKPNNSENTYIKYKGTVNKYIN-------PQLGLI 100

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            +  L    I  F+SK +  K+   ++++    +   L    K ++  ++    +   K+
Sbjct: 101 KLCDLKVINIEQFLSKLKKTKLSLTTIQKHYLVLNGALNKAIKLQMLNDNPCKYVDTPKR 160

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           S      L  ++  ++  N+      +       +  I       GLR  E   L   +I
Sbjct: 161 SKYKASILTFEELHSIYTNLNTKIYEDYIMKLGMDLTI-----ETGLRRGEMCGLQWSDI 215

Query: 182 MDDQSTLRIQ---------------GKGDKIRIVPLLPSVRKAILEY------------- 213
             D   L +                      R +PL   + K +  +             
Sbjct: 216 DFDNKILNVNTALIRVNNDYKISNLKTDSSYRKLPLSNEIIKILKSHKSKQNINKIKYGN 275

Query: 214 --YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
                  FD +      +F    G+ + P  F + +++L +Y  +  +   H LRHS AT
Sbjct: 276 NFVYSNKFDGDSTEYNLIFTWENGRYIIPSNFLQRLKRLCKYCKIEKNIRWHDLRHSNAT 335

Query: 272 HLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDW 309
            LL N   ++ IQ  LGH  + TT  IY +V  +   + 
Sbjct: 336 ILLKNKISMKVIQERLGHSLMQTTSDIYAHVTEEMNREA 374


>gi|150019810|ref|YP_001312064.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149906275|gb|ABR37108.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 312

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 57/297 (19%), Positives = 120/297 (40%), Gaps = 32/297 (10%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRS 87
           R L   T+Q Y+   R    F+            IR ++   +  FI   +T+  I D +
Sbjct: 29  RNLRPATIQFYDNSMRSIYKFIDPKMP-------IRDITKATVDNFIIGCQTELDIKDIT 81

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           +   L  +K+ L Y  +     +    ++  +K    +    ++++   L+        +
Sbjct: 82  IHTYLRALKAILYYFMRSGYMEK---FHIPLIKYDKPVIETYSDEEVKLLLKKP---NKN 135

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
           +  +I+ RN  I  +LY  G+R S  ++L  ++I    + + ++   ++    PL+  + 
Sbjct: 136 KCNFIEFRNWVICNVLYATGIRSSNLINLQIKDIDLCNNLISMKTTKNR---KPLVIPIT 192

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-----RRYLGLPLSTTA 262
           K++             N +  LF    G  ++       +R        +  G+      
Sbjct: 193 KSLQPILREYLAIRKGNEEDYLFCSAYGDKISKVALNGSMRTYNNGRRVKRTGI------ 246

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           H  RH+FA   + N GD+  +Q IL H  L   + Y N+ +K+    + + +++ +P
Sbjct: 247 HRWRHTFAKQWILNHGDIIRLQKILNHSDLDMVRNYVNMFTKD----LQQDFEEFNP 299


>gi|332086087|gb|EGI91249.1| integrase [Shigella boydii 5216-82]
          Length = 312

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 103/257 (40%), Gaps = 29/257 (11%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNIL 114
           E +    + +L+ T +      R  Q I   ++ R +  + +    L        ++ + 
Sbjct: 77  EAMDDPCVHKLNTTMLTELRVYRIEQGIQPSTINREIGALSAMFTALISSGHFLNDNPVQ 136

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            ++ +K +      L++ + + L+D  L     E           + +L   G R  E  
Sbjct: 137 GLKGMKVNEREMGYLSKSECVQLLDA-LAENPDE--------RLAVEILLSTGARWGEVE 187

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +L  + ++  + T   + K  K R VP+  S+ + I                  +F    
Sbjct: 188 ALEQRRVLHCRITFS-KTKNSKNRTVPISESLFEKI-----------KKRGGKLVFPT-- 233

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              L+  + +  I+ +     +P     H LRH+FA+H + NGG++ ++Q ILGH ++ T
Sbjct: 234 ---LDYPLVRDVIKTVA--PDIPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQT 288

Query: 295 TQIYTNVNSKNGGDWMM 311
           T IY ++      D + 
Sbjct: 289 TMIYAHLAPDYLQDAVR 305


>gi|310827270|ref|YP_003959627.1| Site-specific recombinase XerC [Eubacterium limosum KIST612]
 gi|308739004|gb|ADO36664.1| Site-specific recombinase XerC [Eubacterium limosum KIST612]
          Length = 417

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 57/331 (17%), Positives = 123/331 (37%), Gaps = 50/331 (15%)

Query: 18  RQNW-LQNLEIERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
            Q W ++ LE  +     T++  SY      +   +  +   +I    + +L+   I+ F
Sbjct: 96  LQEWMIEWLEGHKR---NTIRPTSYMR----YYNVIYKHIIPQIGSYNLLELTPDIIQKF 148

Query: 75  ISKRRTQK------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           +             +   +++  +  +KS L+    +++  ++    +    K    P  
Sbjct: 149 VKYLCEDGKNDDTGLSPATVRSYMMILKSALELAVDQELMIKNPCRKVSLPPKRFHKPVY 208

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L   +   L + VLLHT    K +       + L    G+R+ E  +L   ++      +
Sbjct: 209 LEPDECKRL-EYVLLHTDDNPKSVA------ILLALKTGMRLGELAALKWGDVDFSNRVI 261

Query: 189 RIQG-----------------------KGDKIRIVPLLPSVRKAILEYYDLCPFDL--NL 223
            ++                          + +R +P+     + +  Y+ +   D   N+
Sbjct: 262 HVRHSVQRVKTFEPEGPKTKLVVSETKTTNSVRDIPMNNGQYEYLKAYHRMVVADSWGNI 321

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
           N    +F+   G  ++P V+Q+Y + + +          H LRH+FAT   S    +  +
Sbjct: 322 NENTFVFQNQSGSFIDPRVYQQYFKVVLKKA-KVKEVNFHALRHTFATIAASKNMQISVL 380

Query: 284 QSILGHFRLS-TTQIYTNVNSKNGGDWMMEI 313
             ILGH   + T Q+Y +  +      M ++
Sbjct: 381 SRILGHSNAALTLQLYIHSITNQDRAEMSKV 411


>gi|240173412|ref|ZP_04752070.1| Integrase [Mycobacterium kansasii ATCC 12478]
          Length = 399

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 61/282 (21%), Positives = 111/282 (39%), Gaps = 17/282 (6%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RGL+  T ++Y    R +L+F+     E+  I  +       + AF+     +     SL
Sbjct: 122 RGLAPATREAYGRVARSYLVFV-----ERRGIAVLDGADGASVLAFLESILDR-WARSSL 175

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
              +S  + FLK+  +  +    N+  ++       L         L   D  L+  +  
Sbjct: 176 FWVVSNFRPFLKFTGRADLVNALNLAGVKRFHAIVPL---------LGDADEELVVRACA 226

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
           +  + AR++AI  L    GLR  + ++L   ++     T+ I  +     +   LP++  
Sbjct: 227 SGVVSARDAAITLLALTTGLRACDIVALRIGDVDWRGHTIGIVQQKTGNPLTLPLPALLL 286

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG-VFQRYIRQLRRYLGL-PLSTTAHTLR 266
             L  Y L     + +  L L        LN      R   +  R  G+         LR
Sbjct: 287 GKLASYVLDERPSSGDDHLFLRMKAPHTRLNDHATVHRVTVETFRKAGVAEAKAGTRLLR 346

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           H+ A+ LL+    L +I ++LGH    +T +Y +V+ +   D
Sbjct: 347 HNAASRLLAAAVPLPTIAAVLGHASEESTNLYMSVDRRRLLD 388


>gi|322384983|ref|ZP_08058635.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150178|gb|EFX43689.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 404

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 57/300 (19%), Positives = 106/300 (35%), Gaps = 38/300 (12%)

Query: 33  KLTLQSYE---CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           + TL+ YE       Q + F+  + +  I    +  L+   ++ F +  R +  G   ++
Sbjct: 111 ENTLK-YEVAPNTYEQRMTFVKNHIQPNIGSLRLTDLTPNHVQKFYNSLR-EHYGAGYVQ 168

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNEKQALTLVDNVLLHTSH 147
              + +        K  + + + I  ++    S      +    +     +D        
Sbjct: 169 NIGNLLSKAFTQAVKWNMISRNPIPLVKKPSLSRKNTKMKTWTVEDQRKFLDY------- 221

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---------------- 191
             K        I  L    G+R  E L L   ++   +  + I+                
Sbjct: 222 -AKDGPKLYYVIFLLALTSGMRKGELLGLIWDDVDTKKGIVSIKRTIVYAQRKLYLKDMP 280

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQL 250
                IR + L     K + ++   CP     N    LF   + K  L P    + + + 
Sbjct: 281 KTESAIRTIQLPEPTIKVMKQWKLECP----ANELNLLFPSPKTKGILYPNSLDKQLAKT 336

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDW 309
            +  G+P   T H LRH+FAT LL +  + + +Q +LGH  + TT   Y++V      D 
Sbjct: 337 IKGAGVP-EITMHGLRHTFATTLLGSNVNPKIVQEMLGHATIKTTMDTYSHVLPNMQKDA 395


>gi|160893952|ref|ZP_02074731.1| hypothetical protein CLOL250_01507 [Clostridium sp. L2-50]
 gi|156864330|gb|EDO57761.1| hypothetical protein CLOL250_01507 [Clostridium sp. L2-50]
          Length = 427

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 59/334 (17%), Positives = 135/334 (40%), Gaps = 44/334 (13%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ- 81
           + L+ + G+ + T Q Y    ++ L       +E    +TIR +  ++   F+ K + + 
Sbjct: 94  RYLKTKTGVRQSTKQEYVI-LQRLLA------KEAFGKKTIRSVKTSDATLFLIKLQQED 146

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLKKSNSLPR-ALNEKQALTLVD 139
                S+      ++   +      I  +      +  +  ++S+ R A+++ Q    + 
Sbjct: 147 GKSYSSIHTIRGVLRPAFQMAVDDDILVKDPFGFQLAGVVVNDSVTREAISKDQMRKFLK 206

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            V          +  +   ++Y+L+  G+RISE   LT ++I  D+  + I  +  +   
Sbjct: 207 FV------HDDVVYCKYYEVVYILFHTGMRISEFCGLTLKDIDLDKRIVNIDHQLQRTSD 260

Query: 200 VPLLPSVRK-------------------AILEYYDLCPFDLNLN-IQLPLFRGIRGKPLN 239
           +  +    K                   AI+E  +    +  ++     LF    G PL 
Sbjct: 261 MRYIIETTKTDAGTRKLPITEDVAQMFQAIIEDRNAPKVEKAIDGYSGFLFYDDNGMPLV 320

Query: 240 PGVFQRYI-RQLRRYLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              +Q      + RY  +      + T H  RH++ +++  +G + +++Q ++GH  +S 
Sbjct: 321 AMHWQHRFNHMVGRYNDIYRVQMPNITPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISV 380

Query: 295 TQ-IYTNVNSKNGGDWM--MEIYDQTHPSITQKD 325
           T  +YT++   +  + +  ME + +    I +K+
Sbjct: 381 TMNVYTHIGFDDAEEELKRMEEFRKAQAEIEKKN 414


>gi|196047877|ref|ZP_03115055.1| transposition regulatory protein TnpA [Bacillus cereus 03BB108]
 gi|196021133|gb|EDX59862.1| transposition regulatory protein TnpA [Bacillus cereus 03BB108]
          Length = 420

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 57/376 (15%), Positives = 129/376 (34%), Gaps = 92/376 (24%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            ++++L      S  TL++Y    + +  +L             +Q+++  +  ++   R
Sbjct: 65  KYMKHLYNNESKS-NTLKTYCTALKHYFTYLQQIKI------DYQQVNFEILSNYVVWLR 117

Query: 80  T----------------------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL--- 114
                                  +++ ++++   +S + +F  YL + ++     +    
Sbjct: 118 NPYRNNKVIPYKIPQKHNKEKEPKQLTEKTVNNYISAVTNFYDYLYRSELIDSDIVEKLM 177

Query: 115 ---------------------------NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
                                      N+  LK+     +   ++Q  T+  +       
Sbjct: 178 KKMFTGAGGNGYKSFLHHVNEGKPYSKNILKLKEPKEKIKIFTKEQVETIYHST------ 231

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK-------------G 194
                + R+  ++ LL+  GLRI EALSL  ++   D    + + K              
Sbjct: 232 ----TNIRDRFLVLLLFETGLRIGEALSLFLKDFQFDAKQRKHKLKLTDRGELPNGGKLK 287

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQLR 251
              R + +  S+     +Y      D N +       LF    G+P+         +++ 
Sbjct: 288 TGSRELEISQSLMNLYDDYLYEVIDDYNPDHNFVLVKLFGKNSGEPMTYSDVYATFKEIE 347

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           R  G+    T H  RH+  T       +++ +Q  LGH ++ TT  +Y + +     D +
Sbjct: 348 RKTGI--YITPHLFRHTHGTIYYLETKNIKMVQERLGHSQVQTTINLYVHPSD----DAI 401

Query: 311 MEIYDQTHPSITQKDK 326
            E +++   +     K
Sbjct: 402 REDWEKAAHAFKIGPK 417


>gi|94442306|dbj|BAE93652.1| integron integrase [uncultured bacterium]
          Length = 238

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 78/182 (42%), Gaps = 37/182 (20%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD 215
             +  +LYG GLR+ E   L  +++  D+  + I+ GKG K R   L   +   + ++  
Sbjct: 56  KLVAMVLYGSGLRLMEGCRLRVKDVDFDRHEIHIRNGKGGKDRKTMLPHRLVGPLEQHLR 115

Query: 216 L----------------------------CPFDLNLNIQLP--------LFRGIRGKPLN 239
           L                             P+D       P          R  R   L+
Sbjct: 116 LVRQQHREDCARGWGSVELPGAMDKKSPTSPWDWAWQWVFPATSAYLHEATRKRRRHHLH 175

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
             V Q+ +R+  + L +    T HT RHSFATHLL +G D+R+IQ +LG   + TT IYT
Sbjct: 176 ETVIQKEVRRSVQALKMSKRVTCHTFRHSFATHLLESGSDIRTIQELLGRADVRTTMIYT 235

Query: 300 NV 301
           +V
Sbjct: 236 HV 237


>gi|297192331|ref|ZP_06909729.1| traSA:integrase fusion protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197719686|gb|EDY63594.1| traSA:integrase fusion protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 372

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/295 (16%), Positives = 105/295 (35%), Gaps = 39/295 (13%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKY 101
             Q L    +   EK ++  I+     +++++++   T   +   + +   + + +  + 
Sbjct: 81  VAQHLRCYVYPAWEKRSLGAIK---PGDVQSWVTSLTTTHGLAASTSRTVFNTVNAVFRA 137

Query: 102 LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
             + ++   +     +           L  +Q  TL D            I AR   ++ 
Sbjct: 138 AVRDRMIPHNPCAEAKLPSVPRKKIVPLAVEQVRTLSDE-----------IPARYKGLVL 186

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ----------------GKGDKIRIVPLLPS 205
           L    GLR  E   L  +++    +T+ ++                      R VPL   
Sbjct: 187 LGAATGLRPGELFGLQLRHVDLLHATVSVEQQIQQTAKHGVYVCPPKTARSHRTVPLPRM 246

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHT 264
              A+  +    P D     +  +F   +G P+          R      G+P  T  H 
Sbjct: 247 AVDAMKAHLRDFPAD---GPEGWIFTAPQGGPVVYTHFMDGSWRPACAKAGIPKGTGPHA 303

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV---NSKNGGDWMMEIYD 315
           LRH +A+ L+ +G  ++++   LGH   + T  IYT++   + +     + + Y 
Sbjct: 304 LRHHYASLLIRHGESVKTVSERLGHTNAAMTLNIYTHLWPDSEERTRAAVDKAYA 358


>gi|332828048|gb|EGK00770.1| hypothetical protein HMPREF9455_03044 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 453

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/295 (18%), Positives = 107/295 (36%), Gaps = 33/295 (11%)

Query: 33  KLTLQSY------ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
             T  SY            FL     Y    I I+ I      +  A++     +K+   
Sbjct: 127 DRTEGSYEQLIINRRRVEMFLR--DRYNLSDIPIKEIEPQFIEDYYAYL--LEERKLAGS 182

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           +L  +++ +K  +   +++     +   + R  K        L E +    +   L    
Sbjct: 183 TLLTAVTKLKQIMLIAQRKGYIHVNPFASFR-FKAQTRDRGYLTEDELRRFMTVEL---- 237

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKGDKIRIVPL 202
              ++   +   I       GL  ++   LT  +       +   +  + K +    V L
Sbjct: 238 --RRYKQRQIRDIFVFQSFTGLAYADVKKLTFDDIQTSFDGELWLIAKRKKTNATFYVKL 295

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           LP  ++ I +Y  +       N   P+       P +     R ++++ +  G+    T+
Sbjct: 296 LPIAKQLIEQYRLVA----KNNFVFPV-------PSHSDNMNRCLQRIAKLCGVNKRVTS 344

Query: 263 HTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           H  RH+ AT   LS G  + ++  +LGH  ++TTQIY  + +      M  + D+
Sbjct: 345 HMGRHTMATTVCLSQGVPIETVSQMLGHSCITTTQIYAKITNDKISKDMAVLTDK 399


>gi|238029078|ref|YP_002913303.1| Phage integrase family protein [Burkholderia glumae BGR1]
 gi|237880655|gb|ACR32983.1| Phage integrase family protein [Burkholderia glumae BGR1]
          Length = 608

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 123/361 (34%), Gaps = 76/361 (21%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS--------------K 77
           +  TL+SY  +  + L++     E    + ++R       +AF++               
Sbjct: 254 APNTLRSYRRELERLLLWC--VVERGTALSSLRVEDCEAYKAFLASPSAAFCGPRAARGS 311

Query: 78  RRTQKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-------- 124
           RR +   D      S + ++  I++   +L + +    +    + + +            
Sbjct: 312 RRWRPFSDAPMSLDSQRYAIRTIRAAFDWLVRIRYLAGNPWAAVTDPRPVKRAALLRVDR 371

Query: 125 -LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE--------ALS 175
            LP  L  +    +       +    +W  A   A+L L+   GLR+SE           
Sbjct: 372 ALPLDLWTRVRAEIASWSESPSPEAARWRAA--QALLLLMGDSGLRVSEAAAASREQLAW 429

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           L     +     L++ GKG K R V +  +   A+  ++       + +           
Sbjct: 430 LPGDGEVPATWWLQVIGKGRKERFVAVSDACVAALRAHWADRGRQFDSDQAAGALLAPLV 489

Query: 236 KP--------------------LNPGVFQRYIRQLRRYLGLPL------------STTAH 263
            P                     +       +  + + L + +             T+ H
Sbjct: 490 IPRTLRAQTKFESGKASADVAGYSVRGAATLVAWVLKRLQVTMGDLSEPERRQLARTSPH 549

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
           +LRH+F T  +++G  L  +Q +LGH  L TT +Y  V ++     +     + H ++T 
Sbjct: 550 SLRHTFGTQSVASGMTLDVVQQLLGHASLQTTSVY--VTAEQRRQRIEAA--KFHAALTG 605

Query: 324 K 324
           K
Sbjct: 606 K 606


>gi|226305786|ref|YP_002765746.1| integrase [Rhodococcus erythropolis PR4]
 gi|226184903|dbj|BAH33007.1| putative integrase [Rhodococcus erythropolis PR4]
          Length = 413

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 106/287 (36%), Gaps = 26/287 (9%)

Query: 41  CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--------KIGDRSLKRSL 92
            D  + +  L      ++    I ++  ++IR ++   R           +   ++    
Sbjct: 75  TDGTRKVRELVGRNLGRLERTPIGKVRPSDIRTWVHSLRNGRPWVKGCTGLAPNTVGNFQ 134

Query: 93  SGIKSFLKYLKKRKITTESNILNM-RNLKKSNSLPRA--LNEKQALTLVDNVLLHTSHET 149
             +           +  +S    + +  K   ++ R+  LN  +   LV+          
Sbjct: 135 GQLAGCFSMAVADGLLLKSPTEGIAKRRKVDRAISRSELLNADEIWQLVETASAGVQTGR 194

Query: 150 KWIDARNSA--ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
            WI ++ +   ++ +    GLR  E   L  +++   +  L +  +        L   ++
Sbjct: 195 NWIASQKTLARMIIVGAATGLRAGEIAGLRIRSVDFLRRELAVTEQSKSGTSEFLWAPLK 254

Query: 208 ------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
                        AI    D    + N +  +P+F   R +  +     +  + LR   G
Sbjct: 255 TAAASRVIPLPDAAIGALSDELRENPNSDRSMPVFLTARQRMWSSSTVGKSFQALRDRCG 314

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           L    T H+LRH +A+ L+  G  ++++Q  LGH +  TT ++Y ++
Sbjct: 315 LDDEVTWHSLRHFYASALIHAGASVKTVQVRLGHEKAETTLEVYAHL 361


>gi|299145293|ref|ZP_07038361.1| integrase [Bacteroides sp. 3_1_23]
 gi|298515784|gb|EFI39665.1| integrase [Bacteroides sp. 3_1_23]
          Length = 409

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 112/281 (39%), Gaps = 22/281 (7%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIG 84
           +I +G ++ T +    D +  L+F+   +++ I    I +L  T I  + +    T    
Sbjct: 122 KIGKGKAESTYRGLVADYKSLLLFMK--SKKNIEDIAIDELEKTFIEDYYTWMLGTAGNA 179

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
           + +    ++ +K  L   ++R        ++   + +       L+E++   ++   L H
Sbjct: 180 NATAFNRVNTLKWLLYIAQERGWIRVHPFVSFECVPEYKKR-SFLSEEELQKMIHLELNH 238

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ--NIMDDQSTLRI--QGKGDKIRIV 200
                      N  +   +   GL  ++  ++T    +   D  T  +  + K     +V
Sbjct: 239 KRQRA------NRDMFLFMCFTGLAYADLKAITYTNIHTDSDGGTWLMGNRVKTGVAYVV 292

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
            LLP   + I +Y  +    ++     P+  G     L+       ++ + +  G  +  
Sbjct: 293 KLLPIAIELIEKYKGVNERKISPEHVFPV--GEYQALLSS------LKYIGKKCGCKVEV 344

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T H  RH+FA   +  G  L ++Q +LGH  + +TQIY  +
Sbjct: 345 TPHIGRHTFAVLAILKGMPLETLQKVLGHNSILSTQIYAEL 385


>gi|288927761|ref|ZP_06421608.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330595|gb|EFC69179.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 410

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 65/285 (22%), Positives = 111/285 (38%), Gaps = 22/285 (7%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKR 90
           S  T Q Y    R F+ FL      K +   + +L+Y  I  F    RT       +  +
Sbjct: 129 SAATFQKYNVCKRHFMTFLQDKY--KRSDIRLSELTYIIIHDFDIYLRTVVGQNPNTATK 186

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           ++   K+     +K  +      LN R   +  +    L +++ L + +  L     E  
Sbjct: 187 TMKTFKTITILGRKMGVIHHDPFLNHRFHLEPVNR-GFLTDEEILKIANKNLGIQRLELV 245

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRK 208
                   +       GL   +  +LTP+NI+  DD+  +  + +   +    LL  + K
Sbjct: 246 ------RDLFVFSCFTGLAYIDVANLTPENIVTLDDKQWIMTKRQKTSVATNVLLLDIPK 299

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            I+E Y    +         LF       L       Y++++    G+    T H  RH+
Sbjct: 300 NIIEKYSGKTYR-----DGKLFP-----MLTNQRTNSYLKEIADICGIKKDLTFHMARHT 349

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           FAT  LS G  + S+  +LGH  + TTQIY  + +K     M ++
Sbjct: 350 FATMSLSKGVSMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQL 394


>gi|260174266|ref|ZP_05760678.1| tyrosine type site-specific recombinase [Bacteroides sp. D2]
 gi|315922537|ref|ZP_07918777.1| tyrosine type site-specific recombinase [Bacteroides sp. D2]
 gi|313696412|gb|EFS33247.1| tyrosine type site-specific recombinase [Bacteroides sp. D2]
          Length = 406

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 58/286 (20%), Positives = 117/286 (40%), Gaps = 26/286 (9%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSLKRSL 92
            T+Q YE  TR    F+    E +++   +  L    I  F +  +  +     S    L
Sbjct: 132 KTVQRYETTTRYLEEFIK--KEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSAITRL 189

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +K  ++   +     +      R  K   + P  L   +       ++L      K +
Sbjct: 190 KNLKKIIRIALENDWIKKDPFAYYR-FKLEETDPEFLTMDEIK-----IILAKEFTIKRV 243

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQG---KGDKIRIVPLLPSVRK 208
           +      ++ ++  GL  S+   L+P++++ D++  L I+    K   +  +P+LP    
Sbjct: 244 EQVRDVFVFCIF-TGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAAS 302

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            + +Y ++      L   LP+        L+      Y++++    G+  + + HT RHS
Sbjct: 303 ILEKYKNVAECTGKL---LPV--------LSNQRMNSYLKEIADVCGIHKNLSTHTARHS 351

Query: 269 FAT-HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +AT   L+NG  + ++  +LGH   S T+ Y  V  +N    M ++
Sbjct: 352 YATSICLANGVSMENVAKMLGHADTSITKHYARVLDQNIFKDMQKV 397


>gi|160937278|ref|ZP_02084640.1| hypothetical protein CLOBOL_02168 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439842|gb|EDP17591.1| hypothetical protein CLOBOL_02168 [Clostridium bolteae ATCC
           BAA-613]
          Length = 296

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/297 (18%), Positives = 115/297 (38%), Gaps = 45/297 (15%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  T++ Y+     F+ ++   + EK  +   + +              +++   ++  +
Sbjct: 30  SSGTIKQYKHYLLLFMQYMNGKSVEKRDVIMWKGI------------LRERMAPVTVNSA 77

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL----PRALNEKQALTLVDNVLLHTSH 147
           L+ +  FL +   +   T       + LK S  +     R ++  +   LV         
Sbjct: 78  LAAVNGFLTHNAWQDCRT-------KFLKVSRRVFCPESREIDRDEYKRLVKCAY----- 125

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
             K  D R + +L  +   G+R+SE   +T + +   ++ +  +G   +IR V L   + 
Sbjct: 126 --KKGDERMAMLLQTICATGIRVSEVPYITIEAVKQGRAEVECKG---RIRTVFLTSRLC 180

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG-LPLSTTAHTLR 266
             +L+Y      D  +     +F    GK L+     R +++L      L      H  R
Sbjct: 181 YMLLDYAKKSHIDSGM-----IFVTRSGKALDRSNIWRNMKKLCEGADVLWDKVFPHNFR 235

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT------NVNSKNGGDWMMEIYDQT 317
           H FA        +L  +  ILGH  ++TT+IYT      ++      + + + Y++ 
Sbjct: 236 HLFARLYYEQEKNLVRLADILGHSNINTTRIYTMESGRNHMRQLEKLEVLFDFYNKF 292


>gi|30260592|ref|NP_842969.1| prophage LambdaBa04, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Ames]
 gi|47525704|ref|YP_017053.1| prophage lambdaba04, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183443|ref|YP_026695.1| prophage LambdaBa04, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Sterne]
 gi|65317857|ref|ZP_00390816.1| COG0582: Integrase [Bacillus anthracis str. A2012]
 gi|165870761|ref|ZP_02215414.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0488]
 gi|167634745|ref|ZP_02393064.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0442]
 gi|167641265|ref|ZP_02399518.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0193]
 gi|170688998|ref|ZP_02880199.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0465]
 gi|170707193|ref|ZP_02897649.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0389]
 gi|177654553|ref|ZP_02936409.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0174]
 gi|190567522|ref|ZP_03020435.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis Tsiankovskii-I]
 gi|227813101|ref|YP_002813110.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. CDC 684]
 gi|229604358|ref|YP_002865039.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0248]
 gi|254686817|ref|ZP_05150675.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. CNEVA-9066]
 gi|254724891|ref|ZP_05186674.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. A1055]
 gi|254738957|ref|ZP_05196659.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Western North
           America USA6153]
 gi|254744545|ref|ZP_05202224.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Kruger B]
 gi|254756197|ref|ZP_05208226.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Vollum]
 gi|254762016|ref|ZP_05213865.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Australia 94]
 gi|30253960|gb|AAP24455.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. Ames]
 gi|47500852|gb|AAT29528.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. 'Ames Ancestor']
 gi|49177370|gb|AAT52746.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. Sterne]
 gi|164713595|gb|EDR19119.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0488]
 gi|167510773|gb|EDR86166.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0193]
 gi|167529819|gb|EDR92567.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0442]
 gi|170127971|gb|EDS96842.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0389]
 gi|170667099|gb|EDT17861.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0465]
 gi|172080665|gb|EDT65748.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0174]
 gi|190561309|gb|EDV15281.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis Tsiankovskii-I]
 gi|227003859|gb|ACP13602.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. CDC 684]
 gi|229268766|gb|ACQ50403.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0248]
          Length = 374

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/324 (15%), Positives = 115/324 (35%), Gaps = 38/324 (11%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           +F L +  Q WL+N   +R + + T  +Y+      +I +       +    ++ L    
Sbjct: 62  NFTLSEYLQEWLENTAKQR-VRETTFTNYKRAINSRIIPV-------LGSHKLKDLKPLH 113

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
            + F+     + +    ++     +K  L+   + ++  ++   ++   +    +    +
Sbjct: 114 GQRFVKSLIDEGLSPAYIEYIFIVLKGSLEDAVRWELLFKNPFQHVEIPRPRKVVNSTWS 173

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            ++    +        + TK+ +     +  L    G+R  E L L  +N   ++  + +
Sbjct: 174 IEETKKFL--------NRTKFENVIYYHLFLLALNTGMRRGEILGLKWKNFDLNEGKISV 225

Query: 191 Q---------------GKGDKIRIVPLLPSVRKAILEYYDLCP-----FDLNLNIQLPLF 230
                                 R++ +  ++ K    Y          F  +      +F
Sbjct: 226 TETLIYDENGFRFTEPKTHGSKRLISIDQNLCKEFKSYKAKQNEFKLLFGQSYEDNDLVF 285

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
               G+P+ P        Q  +   +P     H LRH+ AT LL  G + + +   LGH 
Sbjct: 286 AKETGQPILPRTMTTTFNQFIKKADVPQ-IRFHDLRHTHATILLKLGINPKIVSERLGHS 344

Query: 291 RLSTT-QIYTNVNSKNGGDWMMEI 313
            + TT   Y++V        ++++
Sbjct: 345 SIKTTLDTYSHVTIDMQESAVLKL 368


>gi|326407821|gb|ADZ64892.1| integrase [Lactococcus lactis subsp. lactis CV56]
          Length = 378

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 106/283 (37%), Gaps = 32/283 (11%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           ++     I++++  +I++F+      ++   +     +       Y K       + +  
Sbjct: 101 KRFGEMDIKEINPDQIQSFL---FNSQLSPSTRSLRKNSFNLLFTYAKNVGYIEANPVER 157

Query: 116 MRNLKKSNSLP-------RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
           +   K+ N++        + LN ++   +++          K +      I   L+  GL
Sbjct: 158 VVLPKEKNTIEELKKKQNKFLNLEEMRIILEKNKPIEKDIRKLL------IYEFLFLTGL 211

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR--KAILEYYDLCPFDL----- 221
           RI E  +L  +++  ++ TL +    +          +   K I  Y  +   D      
Sbjct: 212 RIGEVQALRWEDVDFEKKTLAVTHTLNHQGTSEKNRQLLSPKTINSYRTISINDRCLEIL 271

Query: 222 -----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP---LSTTAHTLRHSFATHL 273
                +L  +L +F    G      +  R+ +++ + LG        T H LRHS  + L
Sbjct: 272 NYFYSHLTDELFIFVNKHGDTYCYSILARHFKKVCQVLGEETSQRKYTLHMLRHSHISLL 331

Query: 274 LSNGGDLRSIQSILGHFRLST-TQIYTNVNSKNGGDWMMEIYD 315
           +  G  +++I   +GH       QIY++V  K   D   ++ D
Sbjct: 332 IEIGIPIKTIMERVGHSNEQMILQIYSHVTKKMEEDLANKLKD 374


>gi|228988910|ref|ZP_04148959.1| Integrase-recombinase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228770824|gb|EEM19340.1| Integrase-recombinase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 278

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 63/283 (22%), Positives = 107/283 (37%), Gaps = 23/283 (8%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISK----RRTQKIGDRSLKRSLSGIKSFLKYLKKR 105
           +    +E   ++ ++  +  +   +I      R  +     +L R L+ I SFL +L K 
Sbjct: 1   MKKSKKENSFLKALKPWNIRKFNDWIKSVPYGRNNKPYSVATLARKLTIINSFLSHLYKN 60

Query: 106 KITTESNILNMRN--LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
              +     +++   ++ ++   R L   +   +++                N  I+ LL
Sbjct: 61  NYISIPLHEHLKKATVQANDRPNRDLYYDEVQEILNYY-------KSKQQLFNYMIILLL 113

Query: 164 YGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLC--PF 219
              GLRI E  +    ++   +    LR+ GKGDK R   + P + + I EY        
Sbjct: 114 VSTGLRIQEVANARMGDLFRAEGKLWLRVIGKGDKPREAYISPHLFECISEYRSRKGLKT 173

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLRHSFATHL 273
            LN     PL      +  N       +  +     +P         TAHT RH FA   
Sbjct: 174 QLNRLDNSPLIVSNHLRKFNSTYLSNKVTSILSQARIPCVEQRENPITAHTFRHGFAIMA 233

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             N  +L  IQ  LGH   +TT+IY   + K   +  +   DQ
Sbjct: 234 AENDVELLRIQQTLGHASANTTKIYLEKHMKRKHNAALSFADQ 276


>gi|330822404|ref|YP_004362625.1| Phage integrase family protein [Burkholderia gladioli BSR3]
 gi|327374241|gb|AEA65595.1| Phage integrase family protein [Burkholderia gladioli BSR3]
          Length = 611

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 73/401 (18%), Positives = 132/401 (32%), Gaps = 90/401 (22%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N  P         + +     L    G +  T ++Y  +  +F+++     E    + +I
Sbjct: 224 NRAPAFPYISAAHDLEAVFAYLHRYDGQAA-TQRAYWRELERFVLWCVL--ERGRPMSSI 280

Query: 64  RQLSYTEIRAFISK----------RRTQK---------IGDRSLKRSLSGIKSFLKYLKK 104
                   +AF++            R            +   S + ++  +++   +  K
Sbjct: 281 LVDDCEAYKAFLASPSDAFRGPPASRASGRWRPFALTPLSLDSQRYAVRTLRAAFDWFVK 340

Query: 105 RKITTESNILNMRNLKKSNS---------LPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
            +    +  + + + K             LP  +  +    L D           W  A 
Sbjct: 341 VRYLAGNPWVAVTDPKPVKRATKLQVQRALPIDVWSRVRAELADRAEGFGPQGPDWRLA- 399

Query: 156 NSAILYLLYGCGLRISEAL--------SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
             A++ L+   GLRI EA+            ++ +     LR+ GKG+K RIVPL     
Sbjct: 400 -RALVLLMGDAGLRIEEAVTAERGGLQWWPAEDEIPATWMLRLVGKGNKERIVPLTEDAM 458

Query: 208 KAILEYYDLCPFDLNLN----IQLPLFRGIRGKP---------------------LNPGV 242
           +A+ E++     DL+        LPL       P                       P  
Sbjct: 459 EALREHWQDRGLDLDAPGTNADGLPLVAPTVVPPTPASRDKFGVTDTGQVTRVAGYTPRA 518

Query: 243 FQRYIRQL----------------RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
            +R + +                 R+  G    T+ H  RH+F T   + G  +  +Q +
Sbjct: 519 ARRVVTRAIGRLLEQLPDLEESARRQLAG----TSPHAFRHTFGTQSAAAGMAIEVLQQV 574

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
           LGH  L TT IY N   +     M +   + H  +  +D K
Sbjct: 575 LGHGSLQTTTIYVNAEQQR----MRQESAKYHARLAARDLK 611


>gi|265763640|ref|ZP_06092208.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
 gi|263256248|gb|EEZ27594.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
          Length = 165

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 11/145 (7%)

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           CGLRIS+ + L  +++  D    R+     K +    LP   +A+    +      + ++
Sbjct: 24  CGLRISDIIGLQWKDVFIDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPERGDKTADDHV 83

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
                         P    + I+   +  G+    T HT RH+FAT +L+ G DL ++  
Sbjct: 84  FDL-----------PSGINQLIKPWAKAAGISKRFTFHTARHTFATMMLTLGADLYTVSK 132

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWM 310
           +LGH  +  TQ+Y  + +K   D +
Sbjct: 133 LLGHTSVKMTQVYAKIVNKKKDDAV 157


>gi|257887261|ref|ZP_05666914.1| phage integrase [Enterococcus faecium 1,141,733]
 gi|257823315|gb|EEV50247.1| phage integrase [Enterococcus faecium 1,141,733]
          Length = 378

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/318 (16%), Positives = 118/318 (37%), Gaps = 42/318 (13%)

Query: 18  RQNWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
            + +L     E     L   T ++Y    +        +    +  + +  LS   ++ F
Sbjct: 64  VKQYLDFWMEEYVKLNLKYNTYENYRFTIK-------NHINGYLGKKKLTDLSPALLQNF 116

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQ 133
           I+    +    +++  + S +K+ L        +  ++ +L ++  K     P    + +
Sbjct: 117 INAEFKKGYSKKTMTITHSVLKNALNMAVYPWGLIKQNPMLYVKIPKYEER-PTTKKDLK 175

Query: 134 ALTL--VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            ++L   D++L  T     +        L + +  G+R+ E   LT  N+     T+ ++
Sbjct: 176 IISLEDFDHMLEITPEGHPFYIP-----LNIGFYTGMRVGEVCGLTWDNVDFSNGTITVE 230

Query: 192 GKG---------------DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
            +                   R + +  ++   + ++      +     +L +       
Sbjct: 231 KQMVKNDGAWVYGTPKTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCT 290

Query: 237 P-----LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
                 + P V +   R++   L L  +   H+LRH+ AT LL NG  ++ I   LGH R
Sbjct: 291 KEYGELVTPSVVKWNTRRISNALSLSFN--FHSLRHTHATLLLENGAKMKEISDRLGHSR 348

Query: 292 LSTTQ-IYTNVNSKNGGD 308
           +S T   Y++V  K   +
Sbjct: 349 ISITMDTYSHVTDKMRNE 366


>gi|256838718|ref|ZP_05544228.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
 gi|256739637|gb|EEU52961.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
          Length = 406

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 59/286 (20%), Positives = 116/286 (40%), Gaps = 26/286 (9%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSLKRSL 92
            T+Q YE  TR    F+    E ++    +  L    I  F +  +  +     S    L
Sbjct: 132 KTVQRYETTTRYLEEFIK--KEYQLPDIALNNLEANFISKFDAFLKIEKGCAQNSAITRL 189

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +K  ++   +     +      R  K   + P  L   +       ++L      K +
Sbjct: 190 KNLKKIIRIALENDWIKKDPFAYYR-FKLEETDPEFLTMDEIK-----IILAKEFTIKRV 243

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQG---KGDKIRIVPLLPSVRK 208
           +      ++ ++  GL  S+   L+P++++ D++  L I+    K   +  +P+LP    
Sbjct: 244 EQVRDVFVFCIF-TGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAAS 302

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            + +Y D+      L   LP+        L+      Y++++    G+  + + HT RHS
Sbjct: 303 ILDKYKDVAECTGKL---LPV--------LSNQRMNSYLKEIADVCGIHKNLSTHTARHS 351

Query: 269 FAT-HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +AT   L+NG  + ++  +LGH   S T+ Y  V  +N    M ++
Sbjct: 352 YATSICLANGVSMENVAKMLGHADTSVTKHYARVLDQNIFKDMQKV 397


>gi|222159805|gb|ACM47280.1| integrase-like protein IntD [Enterococcus avium]
          Length = 278

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 59/283 (20%), Positives = 119/283 (42%), Gaps = 31/283 (10%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           SK T+  Y    R+   +L+              L+ + +  +    ++Q +  +++  +
Sbjct: 22  SKATVNKYLRAVRKLAEYLSGEG-----------LTKSRLLEYRKILQSQ-VKAQTVNGA 69

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           LS I +FL++   +          ++ LK        L+E + L+  +   L  + + K 
Sbjct: 70  LSSINAFLEFCGWQD-------CKIKLLKVQRK--AFLDETRELSEAEYKQLLAAAQAKG 120

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
            +     +L +  G G+R+SE   +T +     ++ + ++GK    R V L   +R  +L
Sbjct: 121 NERLYLVMLTIC-GTGIRVSELQHITVEAAQTGRAEICMKGKN---RTVLLQKELRTRLL 176

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFA 270
           +Y      +     +  +FR   GKPL+       +++L     + P     H LRH FA
Sbjct: 177 KYAKELGIN-----EGHIFRTRSGKPLDRTNICHDMKKLCASARVDPRKVFPHNLRHLFA 231

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
               +   +L  +  ILGH R+ TT+IY   ++      + ++
Sbjct: 232 RSFYAIEKNLAHLADILGHSRIETTRIYVAASATAHERILNKM 274


>gi|222034355|emb|CAP77096.1| Phage integrase [Escherichia coli LF82]
 gi|312601703|gb|ADQ92377.1| integrase [Salmonella phage RE-2010]
          Length = 338

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 67/329 (20%), Positives = 121/329 (36%), Gaps = 55/329 (16%)

Query: 8   EIVSFE--LLKER--QNWLQNLEIERGLSKLTLQSY------ECDTRQFLIFLAFYTEEK 57
           E ++FE   ++E   + WL   E  R LS+L  Q Y        D ++ +  L       
Sbjct: 34  EAIAFESFTMEEVNKKPWLGEKEDRRHLSELIEQWYSLYGQTLADPKRLMAKLRIIC-NG 92

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKI-----------GDRSLK---RSLSGIKSFLKYLK 103
           +      +L+  +   +   R   ++             R++    R+LS +  F    K
Sbjct: 93  LGDPIASELTAGDFTKYREARLKGEVRNEDGTLMSPVKPRTVNLEQRNLSSV--FGTLKK 150

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
               +  + +  +   K +      L+  +   L+       S            I  + 
Sbjct: 151 LGHWSAPNPLAGLPTFKITEGELAFLSVDEIKRLLAACAESQS-------PSLLMIAKIC 203

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
              G R SEA +L    I   + T   + KG K R VP+   +   +             
Sbjct: 204 LATGARWSEAENLQGHQISKYRITYT-KTKGKKNRTVPISQDLYHEL------------- 249

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
               P  RG    P     F+R +++    + LP     H LRH+FA+H + NGG++  +
Sbjct: 250 ----PKNRGKLFTPC-RKSFERAVKRAG--IDLPEGQCTHVLRHTFASHFMMNGGNILVL 302

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           + ILGH  +  T +Y +   ++  D + +
Sbjct: 303 RDILGHSDIKMTMVYAHFAPEHLEDAVTK 331


>gi|152987232|ref|YP_001350376.1| prophage CP-933T integrase [Pseudomonas aeruginosa PA7]
 gi|150962390|gb|ABR84415.1| integrase for prophage CP-933T [Pseudomonas aeruginosa PA7]
          Length = 371

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 97/234 (41%), Gaps = 32/234 (13%)

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           +  + +G ++L   L  +++    L++  K T E+ +  +R LK+  +    L+ +Q   
Sbjct: 132 QAAKPVGAKTLNHELVHLRAMFNELERLEKWTGENPLAKVRALKQDETEMGYLSREQIPL 191

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+  +  H S            +  +    G R SEA++LTP  + D +    ++ K  +
Sbjct: 192 LLAKLDQHPSTVG--------MVARVCLATGARWSEAMNLTPLQVRDGRIHF-VRTKSAR 242

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R VP+   ++K++                     G      +     +        L L
Sbjct: 243 NRAVPISAELQKSLE--------------------GALPWRSSYSATYKAFELAVAELDL 282

Query: 257 --PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
             P     H LRH+FA+H + NGGD+ ++Q +LGH  L  T  Y + +  +  +
Sbjct: 283 QLPKGQLTHVLRHTFASHYMMNGGDILTLQRVLGHATLQMTMRYAHFSPGHLAE 336


>gi|317055405|ref|YP_004103872.1| integrase family protein [Ruminococcus albus 7]
 gi|315447674|gb|ADU21238.1| integrase family protein [Ruminococcus albus 7]
          Length = 396

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/333 (15%), Positives = 114/333 (34%), Gaps = 54/333 (16%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQS--YECDTRQFLIFLAFYTEEKITIQTIRQ 65
           + + FE+  E+         E       L++  YE   +     L       +    + +
Sbjct: 65  KAIKFEVFAEQ-------WFEEYAKPN-LRNTTYERMLQ-----LRGRIYPALGHMRMDK 111

Query: 66  LSYTEIRAFISKRRTQK--------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           ++  +I+AF++    +         +  ++++ +LS +     Y  K  +  ++    + 
Sbjct: 112 ITPRQIQAFVNSLSREGANERTGKPLAPKTIRHNLSFVSDVFSYAVKMGVVNDNPCSKVT 171

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             K + +  +    +Q    +   LL+          +      L+   G R  E L L 
Sbjct: 172 LPKNNQAEKKIYTPEQVQRFL--TLLNDEP------LKYRTFFNLMIFSGFRRGEMLGLE 223

Query: 178 PQNIMDDQSTLRIQGKGDKI----------------RIVPLLPSVRKAILEY-----YDL 216
            +++  + + + I+   +                  R +     +   + EY        
Sbjct: 224 WKDVDFEHNIISIRRTSNYTGRKGTYTDTTKTKKSQRTLKFPQEIMDMLREYKDEQDMQA 283

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
                       L+    G P+  G    ++ +      LP     H+ RH FA+ L++ 
Sbjct: 284 LKCGDKWVETDRLYTKWNGLPMQNGTPYFWLGEFCEKHDLPFY-GLHSFRHLFASLLVNQ 342

Query: 277 GGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGD 308
           G D+ ++   LGH  +STT  IY ++  +    
Sbjct: 343 GVDIVTVSGALGHSTVSTTSNIYCHMLDEARAK 375


>gi|295840966|dbj|BAJ06851.1| integron integrase intI [uncultured bacterium]
          Length = 281

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 66/284 (23%), Positives = 105/284 (36%), Gaps = 60/284 (21%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           +  S  T +SY    R+F+ F              R+L   E+ AF++     +K+   +
Sbjct: 20  KHYSHRTEKSYVHWIRRFVRFHNKRHP--------RELGKAEVEAFLTHLAVDRKVSAST 71

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++ + +    + + + ++       ++   KK   LP  L+ +Q   +     L    
Sbjct: 72  QNQAFNALLFLYRTVLEMEMPQLD---SVERAKKPRRLPVVLSSEQVRQV-----LSQLD 123

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
              WI         LLYG GLR+ E L L  Q+I      L ++ GKG+K R+  L  +V
Sbjct: 124 GKYWIAGN------LLYGSGLRLVECLRLRVQDIDFAMRQLVVRGGKGNKDRVTILPEAV 177

Query: 207 RKAILEYYDLCPFDLNLNIQLPL-------------------------FRGIRG------ 235
            + +  Y        N +I+  L                         F           
Sbjct: 178 IEPLNGYLQKVLTIHNRDIEKGLGQVYMPFALARKYPHAASEWAWQFVFPSTTYIRDRDT 237

Query: 236 -----KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                  L+    QR IR   +   +    TAHTLRHSFATHLL
Sbjct: 238 GRMVKYHLHEKALQRAIRNAVKASSITTRATAHTLRHSFATHLL 281


>gi|318606029|emb|CBY27527.1| integrase [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 314

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/274 (20%), Positives = 105/274 (38%), Gaps = 34/274 (12%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRA-----FISKRRTQKIGDRSLKRSLSGIKS 97
                  L       IT +         +R      + +  RT+ +   ++    + +++
Sbjct: 44  LEIICKGLGNPIAADITPKDWAHYRDQRLRGEINNGYSTSLRTRMVTTGTVNSEQAYLRA 103

Query: 98  -FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
            F +  +  + +  + ++N+R   +       LN+ Q  +L+D   LH + E        
Sbjct: 104 VFNELTRLGEWSLPNPLMNIREFDQPEREMAWLNDDQIDSLLDACDLHGNPELT------ 157

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
             I+ L    G R +E   +    I  ++ T  I  KG K R VPL   + +A+      
Sbjct: 158 -LIVRLCLSTGARWNEIAKIKASQISPNKITF-INTKGKKNRTVPLSEDIYQAL------ 209

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
                      P ++           F R IR     + LP+    H LRH+FA+H +  
Sbjct: 210 --AARKGKPFEPCYK----------QFYRVIRLA--QIELPVGQMTHVLRHTFASHFMMA 255

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           GG++  +Q ILGH  +  T  Y++    +  D +
Sbjct: 256 GGNIIVLQRILGHSDIRVTMRYSHFAPDHLEDAI 289


>gi|253990065|ref|YP_003041421.1| type 1 fimbriae regulatory recombinase protein [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253781515|emb|CAQ84678.1| similar to type 1 fimbriae regulatory recombinase protein fimb o
           escherichia coli [Photorhabdus asymbiotica]
          Length = 206

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 81/204 (39%), Gaps = 15/204 (7%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R L + +  +++    +  + E       +  ++Y+ +  GLR+SEA  L   +I  D  
Sbjct: 5   RHLTQYEVESMLAMAKMSANPER------DYCLVYMSFVHGLRVSEARHLRLSDIDLDDE 58

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
           +L I+  KG      PLL    KAI  + ++            LF    GKPL      +
Sbjct: 59  SLYIRRLKGGFCTNHPLLGYEIKAIKAWLEVRKT-FRGAESDWLFLSRYGKPLTRQRIYQ 117

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            I QL R   + + +  H LRH+    L   G D R IQ  LGH  +  T  YT  N + 
Sbjct: 118 LINQLGRQAKISVDSHPHMLRHACGFALADRGVDTRLIQDYLGHSNIRHTVRYTASNVER 177

Query: 306 -------GGDWMMEIYDQTHPSIT 322
                    +   E++    P   
Sbjct: 178 FHGVWSMKRNRYRELHFDYIPRAD 201


>gi|332661864|ref|YP_004451334.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100]
 gi|332337361|gb|AEE54461.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 524

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/199 (24%), Positives = 87/199 (43%), Gaps = 18/199 (9%)

Query: 126 PRALNEKQALT------LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           P+ L+ +  +       LV   L      TK  + +   I+ L+  CGLR++E + L  +
Sbjct: 16  PQLLSYENMIQAHPDIKLVSRQLQEALAGTK--NLKYRVIILLMLDCGLRVTEVVQLQRK 73

Query: 180 NIMDDQSTLRI-----QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           N    Q+T+ +     + K  + R +PL   + +A+ +Y+             P  +  +
Sbjct: 74  NFNFMQNTVTVASLKKRSKRLRTRTIPLSTRLLEALADYWPRIKDPEPDTYIFPAAKTSK 133

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              L+  V  + I++    +        H LRH+FAT ++  G D+R  Q +LGH    T
Sbjct: 134 ALYLSRVVVWKRIKKYSGGV-----VHPHMLRHTFATRVVREGNDIRVAQKLLGHNSQLT 188

Query: 295 TQIYTNVNSKNGGDWMMEI 313
           T+IY +V  +     +  I
Sbjct: 189 TEIYLHVEDQELQQAIRSI 207


>gi|306815648|ref|ZP_07449797.1| putative phage integrase [Escherichia coli NC101]
 gi|305851310|gb|EFM51765.1| putative phage integrase [Escherichia coli NC101]
          Length = 352

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 63/341 (18%), Positives = 129/341 (37%), Gaps = 47/341 (13%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M      ++   ELL E   +       R L   T  SY    R F+ F+          
Sbjct: 1   MGSKKAGKLTWDELLDEY--FFS-----RNLRPDTEWSYRKVVRGFVDFMGEGV------ 47

Query: 61  QTIRQLSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT--TESNILNMR 117
                ++  +I+ +  +  +TQ +   +    ++ +++   +  K+ +   TE+ +    
Sbjct: 48  -FPADVTQRDIQRWRRQVLKTQSLSTYTWNNKVAHLRAIFGFGIKKGLLPQTENPLCEAS 106

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS------------AILYLLYG 165
             K++    + LN+ Q + +   V     +ET+     +              +L +L  
Sbjct: 107 VAKEAKK-KKTLNKDQMIQVYLVVQKFAEYETQQRVPCDRRRNALYPARYWLTVLDVLRY 165

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV--RKAILEYYDLCPFDLNL 223
            G+R ++   +  +++   +  + +Q +G K      +P V   KA LE        L  
Sbjct: 166 TGMRFNQLQHIRLKDVRPGEGVIELQLEGSKTHREWCVPIVAPLKAPLELLLSRARRLGA 225

Query: 224 NIQLPLFRGIR-----------GKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
                LF   R             P+      + + R+L R  G     +AH  RH+ AT
Sbjct: 226 GPDDFLFDVCRFTDCIEPDDYVYCPVRAHQAVKGFFRRLSRECG--FLVSAHRFRHTLAT 283

Query: 272 HLLSN-GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            L+ +   ++  ++S+LGH  ++TT  Y +V+  +    + 
Sbjct: 284 ILMESPERNMHLVKSMLGHQSIATTMEYVDVSVASAAGTLE 324


>gi|331697172|ref|YP_004333411.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326951861|gb|AEA25558.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
          Length = 425

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 103/278 (37%), Gaps = 28/278 (10%)

Query: 47  LIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK 106
           L  LA++          R  +   ++A++          R+ +R L+ + +   +L +  
Sbjct: 95  LHALAWFRWCATRDLDPRVATSAHVKAWLHALSAAGAARRTRQRMLATLSALYGHLAETG 154

Query: 107 ITTESNIL-------NMRNLKKSNSLPRALNEKQALTLVDN--VLLHTSHETKWIDARNS 157
               +           + + ++ +   R L  +Q   L+D    L H          R  
Sbjct: 155 AVAANPAAIDRRRLGLVVSTREPSPTIR-LTAQQVRALLDASGTLRHGPALRTLYATRAR 213

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
           A++ LL   GLRISE   L   +++       LR+ GKG   R V +    ++A+ +Y  
Sbjct: 214 AVVALL-TLGLRISELTGLDRDDLLRTGGDQVLRVHGKGGVRREVYMTDLAQQALSDYLA 272

Query: 216 LCPFD----------LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-----GLPLST 260
                           +  +  PL     G   +     R +R++          +    
Sbjct: 273 ERDRLGSTATPARRGTSRAVAEPLIATRDGHRCSRVDLYRLLRRIAAAAGPALADVADRI 332

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             H LRH++ T  L     ++ +++ +GH  ++TT+ Y
Sbjct: 333 HPHALRHAYVTIALEQDARIQHVRADVGHASITTTEHY 370


>gi|323343426|ref|ZP_08083653.1| integrase [Prevotella oralis ATCC 33269]
 gi|323095245|gb|EFZ37819.1| integrase [Prevotella oralis ATCC 33269]
          Length = 407

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/314 (19%), Positives = 128/314 (40%), Gaps = 30/314 (9%)

Query: 9   IVSFELLKERQ-NWLQNLE-IERGLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQ 65
           ++ + L K+R  N+L   +      +K  L+  +    +F  FL   Y   + +I+    
Sbjct: 110 MLGYRLKKDRNINFLDYYQAYIDSYTKKDLRMIKIALNRFKDFLKEQYPLYEFSIKP-DL 168

Query: 66  LSYTEIRAFISKRRTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           ++   +  F+   +++ +G   +S+ +     K  ++Y    ++  +     +       
Sbjct: 169 ITKDMMEQFVEYLQSRSVGEGAKSIYQRF---KKVVRYAIDHEVMLKDPCKGVVCKVDEQ 225

Query: 124 SLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            L +  L+  +  TL+     + +   +       A ++ LY CGLR  +   LT +NI 
Sbjct: 226 ILRKDVLSMDEIQTLIQCHYENENPNVR------RAFIFCLY-CGLRFCDVKDLTYKNID 278

Query: 183 DDQSTLRI--QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLN 239
                L+              ++  +   +L      P DLN +I  LP +         
Sbjct: 279 YTNRLLKFEQNKTKGHSAHSGVVIPLNDGLLSLIGDAPDDLNSSIFNLPSYESCC----- 333

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                + +++  +  G+    + H  RHSFA ++L+NG +++++ S+LGH  L  T+ YT
Sbjct: 334 -----KSVKRWVKRAGINKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYT 388

Query: 300 NVNSKNGGDWMMEI 313
               K   + +  +
Sbjct: 389 RAVDKLKSEAINSL 402


>gi|326800846|ref|YP_004318665.1| integrase family protein [Sphingobacterium sp. 21]
 gi|326551610|gb|ADZ79995.1| integrase family protein [Sphingobacterium sp. 21]
          Length = 392

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 104/281 (37%), Gaps = 29/281 (10%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  T ++     RQF+ F          +    +++  +IR + +  R       ++   
Sbjct: 131 SNQTWRNQRNCLRQFIDFWGS------PLIPFHEITQEKIREYDAYLRKLDKSHNTITGY 184

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
              I+ FL   +K+ I   +    +       S  R L + +   L+D       ++   
Sbjct: 185 HKVIRKFLNAAEKQNIIKVNPYNGLTFRYVPGSR-RPLEQVELKRLMDIY-----YKKPL 238

Query: 152 IDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           + +    +   L+ C  G+RIS++  L    I+ ++ T +++      R   +       
Sbjct: 239 MHSVREVLRRFLFSCLTGVRISDSHRLHRNMIVGNKLTFKMKKTERYGRTATIP------ 292

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
                     DL    +  LF               Y++ +    G+  + T H  R +F
Sbjct: 293 ----LPKAALDLVEGQEGYLF-----TKFADKTINEYLKVIAVIAGIEKNLTYHCARDTF 343

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            T  +  GGD++S+  I+GH     T+IY  ++ +   + M
Sbjct: 344 GTIFIELGGDIKSLCDIMGHSDTRITEIYLKMSDQRKQNLM 384


>gi|317475117|ref|ZP_07934385.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316908761|gb|EFV30447.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 421

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 58/286 (20%), Positives = 117/286 (40%), Gaps = 26/286 (9%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSLKRSL 92
            T+Q YE  TR    F+    E +++   +  L    I  F +  +  +     S    L
Sbjct: 147 KTVQRYETTTRYLEEFIK--KEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSAITRL 204

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +K  ++   +     +      R  K   + P+ L   +       ++L      K +
Sbjct: 205 KNLKKIIRIALENDWIKKDPFAYYR-FKLEETDPKFLTMDEIK-----IILAKEFTIKRV 258

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQG---KGDKIRIVPLLPSVRK 208
           +      ++ ++  GL  S+   L+P++++ D++  L I+    K   +  +P+LP    
Sbjct: 259 EQVRDVFIFCVF-TGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVATS 317

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            + +Y ++      L   LP+        L+      Y++++    GL  +   H+ RHS
Sbjct: 318 ILEKYKNVAECTGKL---LPV--------LSNQRMNSYLKEIADVCGLQKNLCTHSARHS 366

Query: 269 FAT-HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +AT   L+NG  + ++  +LGH   S T+ Y  V  +N    M ++
Sbjct: 367 YATSICLANGVSMENVAKMLGHADTSVTKHYARVLDQNIFKDMQKV 412


>gi|53711443|ref|YP_097435.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|154490858|ref|ZP_02030799.1| hypothetical protein PARMER_00775 [Parabacteroides merdae ATCC
           43184]
 gi|167762758|ref|ZP_02434885.1| hypothetical protein BACSTE_01116 [Bacteroides stercoris ATCC
           43183]
 gi|189461170|ref|ZP_03009955.1| hypothetical protein BACCOP_01817 [Bacteroides coprocola DSM 17136]
 gi|189464486|ref|ZP_03013271.1| hypothetical protein BACINT_00828 [Bacteroides intestinalis DSM
           17393]
 gi|212695418|ref|ZP_03303546.1| hypothetical protein BACDOR_04967 [Bacteroides dorei DSM 17855]
 gi|218131431|ref|ZP_03460235.1| hypothetical protein BACEGG_03049 [Bacteroides eggerthii DSM 20697]
 gi|237707983|ref|ZP_04538464.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|237718310|ref|ZP_04548791.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|262406714|ref|ZP_06083263.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294644489|ref|ZP_06722249.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294808560|ref|ZP_06767306.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298377021|ref|ZP_06986975.1| integrase [Bacteroides sp. 3_1_19]
 gi|298483541|ref|ZP_07001717.1| integrase [Bacteroides sp. D22]
 gi|301308604|ref|ZP_07214557.1| integrase [Bacteroides sp. 20_3]
 gi|319644409|ref|ZP_07998863.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|329960021|ref|ZP_08298517.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|46242813|gb|AAS83518.1| Int [Bacteroides fragilis]
 gi|52214308|dbj|BAD46901.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|154088606|gb|EDN87650.1| hypothetical protein PARMER_00775 [Parabacteroides merdae ATCC
           43184]
 gi|167699098|gb|EDS15677.1| hypothetical protein BACSTE_01116 [Bacteroides stercoris ATCC
           43183]
 gi|189432084|gb|EDV01069.1| hypothetical protein BACCOP_01817 [Bacteroides coprocola DSM 17136]
 gi|189438276|gb|EDV07261.1| hypothetical protein BACINT_00828 [Bacteroides intestinalis DSM
           17393]
 gi|212662053|gb|EEB22627.1| hypothetical protein BACDOR_04967 [Bacteroides dorei DSM 17855]
 gi|217986363|gb|EEC52700.1| hypothetical protein BACEGG_03049 [Bacteroides eggerthii DSM 20697]
 gi|229452494|gb|EEO58285.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229457969|gb|EEO63690.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|262355417|gb|EEZ04508.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292640180|gb|EFF58438.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294444241|gb|EFG12962.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298266005|gb|EFI07664.1| integrase [Bacteroides sp. 3_1_19]
 gi|298270298|gb|EFI11883.1| integrase [Bacteroides sp. D22]
 gi|300833398|gb|EFK64015.1| integrase [Bacteroides sp. 20_3]
 gi|313158580|gb|EFR57974.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
 gi|317384129|gb|EFV65104.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|328533155|gb|EGF59924.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 411

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 107/291 (36%), Gaps = 27/291 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K TL  Y    +    FL   Y  + I ++ +     ++   F+  R  +     ++  
Sbjct: 130 AKGTLLKYRTVYKHMQEFLDIRYHVKDIALKELTPAFISDFEMFL--RTDKHCCTNTVWL 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +  +++ +      +  T         +KK  +    L + +   L++  L +   E  
Sbjct: 188 YVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKDEIRLLMEGKLKNAKQE-- 244

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRI-QGKGDKIRIVPLLPSV 206
                   +       GL  ++  +LT +N     D+   + I + K   +  + LL   
Sbjct: 245 ----LYRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRQKTGVVSNIRLLDIA 300

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            + I +Y  LC           +F          G     IR + +  G+    T H  R
Sbjct: 301 NRIIGKYRGLC-------GDGRIFPVPHYNTCLAG-----IRAVAKRCGITKHITWHQSR 348

Query: 267 HSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           H+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +     M  +  +
Sbjct: 349 HTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMENLAAR 399


>gi|282164838|ref|YP_003357223.1| putative site-specific recombinase [Methanocella paludicola SANAE]
 gi|282157152|dbj|BAI62240.1| putative site-specific recombinase [Methanocella paludicola SANAE]
          Length = 324

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 58/296 (19%), Positives = 110/296 (37%), Gaps = 46/296 (15%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           LSK T+++Y+  T+     L +             L Y++    + +R  +     ++  
Sbjct: 51  LSKTTVKNYKAATKAIFNKLGY-------------LEYSDQYVSMVRRAIEGKPSNTVFL 97

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP----RALNEKQALTLVDNVLLHTS 146
            ++ ++   +               +   K + +      +    ++ + L +       
Sbjct: 98  YMTALQELFRANYLEDY-------EIAKPKVTRNCTNDENKYHKPQEIVRLFE-----AI 145

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK------IRIV 200
                 + R+SAI+ LLY   LR SE   L   +   +   + I   G        +R +
Sbjct: 146 GTDTLYNCRDSAIISLLYFAALRNSEVCHLEVGDYDLENHFVTIHEHGKWHPKSYQVRKL 205

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
            +       IL +Y +   +   +    LF    G P N    +  I +  +  GL   T
Sbjct: 206 YVPKECHAKILAWYKVREQENITSKT--LFLTSNGVPFNDLSLRNVIVRRAKDAGL--KT 261

Query: 261 TAHTLRHSFATHLLSNGGD------LRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
             H LRHS ATHL +NG +      +  +   LGH  +STT IY + + +    ++
Sbjct: 262 YPHKLRHSRATHL-ANGINGNKPWAIGVLSKYLGHSSISTTAIYVHTSDEEQKRYL 316


>gi|255012146|ref|ZP_05284272.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           3_1_12]
          Length = 400

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 107/291 (36%), Gaps = 27/291 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K TL  Y    +    FL   Y  + I ++ +     ++   F+  R  +     ++  
Sbjct: 119 AKGTLLKYRTVYKHMQEFLDIRYHVKDIALKELTPAFISDFEMFL--RTDKHCCTNTVWL 176

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +  +++ +      +  T         +KK  +    L + +   L++  L +   E  
Sbjct: 177 YVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKDEIRLLMEGKLKNAKQE-- 233

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRI-QGKGDKIRIVPLLPSV 206
                   +       GL  ++  +LT +N     D+   + I + K   +  + LL   
Sbjct: 234 ----LYRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRQKTGVVSNIRLLDIA 289

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            + I +Y  LC           +F          G     IR + +  G+    T H  R
Sbjct: 290 NRIIGKYRGLC-------GDGRIFPVPHYNTCLAG-----IRAVAKRCGITKHITWHQSR 337

Query: 267 HSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           H+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +     M  +  +
Sbjct: 338 HTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMENLAAR 388


>gi|187928591|ref|YP_001899078.1| integrase family protein [Ralstonia pickettii 12J]
 gi|241114169|ref|YP_002973644.1| integrase family protein [Ralstonia pickettii 12D]
 gi|187725481|gb|ACD26646.1| integrase family protein [Ralstonia pickettii 12J]
 gi|240868742|gb|ACS66400.1| integrase family protein [Ralstonia pickettii 12D]
          Length = 704

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 78/357 (21%), Positives = 135/357 (37%), Gaps = 76/357 (21%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-LSYTEIRA----- 73
           +WL  L         T +SY  +  +FL++  +   + ++  T    ++Y +  A     
Sbjct: 354 DWLHYLS-------NTQRSYRKEAERFLLWAIWIRRKPLSSMTTEDCVAYRDFLADVPDD 406

Query: 74  FISKRRTQ-----------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--- 119
           + + R  +           K+   S   +L+ +++  +YL  +   + +    +R     
Sbjct: 407 WCAPRSRERWTPSWKPFEGKLSPESQAYALTVLQNLYRYLNDKNYLSGNPWGGVRATNGG 466

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K    + R+L E Q   +V+ + L    E    + R    L LLY  GLR++E +  T  
Sbjct: 467 KPQLDVGRSLTEDQWAFVVERLFLL---ERTSSNLRLQVALPLLYATGLRLAEIVGATTA 523

Query: 180 NIMD------------DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQ 226
           ++              D   L + GKG ++R VP+   V  A+  Y D   F  +   I+
Sbjct: 524 DLAWRSLALPRSGERMDGWWLTVVGKGSRVREVPVPDEVVHALGAYLDSRGFPSDPAQIR 583

Query: 227 LPLFR------------------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT------- 261
            P+                         PL PGV  R I++  +     L  T       
Sbjct: 584 EPVALLGHATDQAERAPWAKRDTASPAAPLTPGVLYRQIKRFFQACATELEATDPQGAAR 643

Query: 262 -----AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                 H LRHS A+H ++ G  +  +Q  LGH  L TT +Y    +      M E+
Sbjct: 644 LNEASTHWLRHSHASHAIAAGTPVEIMQQNLGHKSLDTTTVYV---TSEEAIRMKEL 697


>gi|227887411|ref|ZP_04005216.1| phage integrase family site-specific recombinase [Escherichia coli
           83972]
 gi|300983731|ref|ZP_07176712.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 45-1]
 gi|301049115|ref|ZP_07196096.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 185-1]
 gi|227835761|gb|EEJ46227.1| phage integrase family site-specific recombinase [Escherichia coli
           83972]
 gi|300299061|gb|EFJ55446.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 185-1]
 gi|300408460|gb|EFJ91998.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 45-1]
 gi|315292311|gb|EFU51663.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 153-1]
          Length = 179

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/144 (31%), Positives = 61/144 (42%), Gaps = 3/144 (2%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLC 217
           ++ L Y  GLR+SE LSL   ++      + IQ  K     + PL      AI  + +  
Sbjct: 1   MILLAYFHGLRVSELLSLQLSDLELTTEKIYIQRIKNGFSTVHPLQKEEVIAITNWLNER 60

Query: 218 PFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
                 + N    LF    GKPL+   F   +    +  GL +    H LRH+    L  
Sbjct: 61  NSLNVKHFNDNPWLFVSRTGKPLSRQRFYNIVSAAGKNAGLNIKVHPHMLRHACGYSLAD 120

Query: 276 NGGDLRSIQSILGHFRLSTTQIYT 299
           NG D R IQ  LGH  +  T IYT
Sbjct: 121 NGVDTRLIQDYLGHRNIRHTVIYT 144


>gi|154496301|ref|ZP_02034997.1| hypothetical protein BACCAP_00589 [Bacteroides capillosus ATCC
           29799]
 gi|150274384|gb|EDN01461.1| hypothetical protein BACCAP_00589 [Bacteroides capillosus ATCC
           29799]
          Length = 301

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 108/283 (38%), Gaps = 20/283 (7%)

Query: 47  LIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK 106
           L  LA      +  + +  +   ++++F +           + +  + + S      + +
Sbjct: 27  LELLARRIPADLMKRPLSAILPMDLQSFFNSFAAS-ASKSYVDKMGTLVNSLFAQAVENE 85

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
           +  ++ + +++  K       +    +   ++   L +T            A++ LL   
Sbjct: 86  LCAKNPMRHVKIPKVQEQCRESFTFDELKLILRYALGYTPLRVS------VAVITLLL-T 138

Query: 167 GLRISEALSLTPQNIMDDQSTLRI-------QGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           GLR SE L L   ++  D  T+         + K ++ R   +       +L        
Sbjct: 139 GLRRSELLGLKWSDLTADTLTVNRSVYLESGKPKVEEHRAKTISSLRTIPLLPELSYKLH 198

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQR----YIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
            L    +  +F    G   +P  F R    + R LR         + H  RH+FAT  L+
Sbjct: 199 TLPKRSEF-IFCSRNGTLWHPRNFSRDYTTFFRHLREAEPDARRLSPHCCRHTFATLSLA 257

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           +G D+R++Q++LGH  + TT  YT+ +       +  + D+ +
Sbjct: 258 SGADIRTVQALLGHANIKTTSRYTHPDLAMMAQAVYNLRDKAN 300


>gi|153830812|ref|ZP_01983479.1| integrase [Vibrio cholerae 623-39]
 gi|148873696|gb|EDL71831.1| integrase [Vibrio cholerae 623-39]
          Length = 392

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 99/282 (35%), Gaps = 22/282 (7%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR----TQKIGDRSLKRSL 92
            +Y       +    ++   ++T + + +      R ++           +   +     
Sbjct: 112 SNYSIWVSAGIHLHRYHRHAELTFEQVDKYFLEGFRHYLQHEAMTKSDTGLSRNTACSYF 171

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           + I++ L   ++ +I  ++ +  ++++K   +    L   +   L           TK  
Sbjct: 172 NKIRAALNQAQRDRIIRDTPVEQVKSIKAERTQRTYLTLDEVKAL-----------TKAE 220

Query: 153 DARNSAILYLLYGC--GLRISEALSLTP-QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              +      L+ C  GLR S+   L   +  +  Q   RI     K++           
Sbjct: 221 CRYDVLRRAFLFSCTTGLRWSDIHKLVWGEIELFAQGHYRIIFSQIKLKNSGNGLQYLDL 280

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
                 L   +        +F+G+R    +       + Q     G+    T H  RH+F
Sbjct: 281 PDSAVRLLNLENRGKPTERVFKGLRYDSYS----NVALVQWAIRAGITKHVTFHAGRHTF 336

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           A + L+ G D+ S+  +LGH  L TT+IY ++      + M 
Sbjct: 337 AVNQLARGLDIYSLSRLLGHSELRTTEIYADILETRRTEAMR 378


>gi|145298598|ref|YP_001141439.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142851370|gb|ABO89691.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 351

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 88/237 (37%), Gaps = 33/237 (13%)

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALT 136
           ++ Q +   ++ R  + +++    LK+      E+ +  +R  K + S    L   +  +
Sbjct: 135 QKKQGVTPNTVNREHAYLRAVFNELKRLGEWQGENPLDGLRAYKVAESELAFLYLDELKS 194

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+   +   + +          ++ L    G R SE   LT   +  ++ T   + K  K
Sbjct: 195 LLAACVESPNTDL-------LMVVKLCLATGARWSEVEELTQSQVSPNRVTFT-RTKSKK 246

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R VP+ P +   +         D                        R    +    GL
Sbjct: 247 SRSVPISPELYVQLPRKRGRLFSD----------------------CYRAFEMVVERAGL 284

Query: 257 --PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             P     H LRH+FA+H + NGG++  +Q ILGH  ++ T  Y +    +  D + 
Sbjct: 285 ELPPGQNTHVLRHTFASHFMMNGGNILVLQKILGHSTIAMTMRYAHFAPDHLEDAVR 341


>gi|293374058|ref|ZP_06620397.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292631019|gb|EFF49658.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 418

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/309 (16%), Positives = 102/309 (33%), Gaps = 33/309 (10%)

Query: 11  SFELLKERQNWLQNL-EIERGLSKLT----LQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           + +L + R N+++    ++R     +    + ++     + L   A       +   ++ 
Sbjct: 121 AEQLERSRSNFIEYFDHVQRTRHAHSSDSIIVNWRR-VHELLKIFAKSDTILFSQMDLKL 179

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKR-----SLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           +     R FI           ++ +       S  K+ LK        T      ++ ++
Sbjct: 180 V--ESFRQFIMNAPQGGTKRGTISQNTASTYFSIFKAGLKQAFIDGYLTIDIAAKVKGIQ 237

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +  S    L  ++   L               D             G+R  +   L    
Sbjct: 238 ERESRREYLTIEELNRLAQ----------TPCDPLLKRAALFSALTGIRHCDIQKLKWSE 287

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           +       R+     K + V  +P   +A     +    +L +   LP          +P
Sbjct: 288 VEQFNGGYRLNFTQQKTKGVEYMPISEQAYNLCGEQKEGELLVFAGLP----------DP 337

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               R +++     G+    T H  RHS+AT  L+ G D+ ++  +LGH  + TTQ+Y  
Sbjct: 338 SWINRPVKKWVEAAGISKHITFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAK 397

Query: 301 VNSKNGGDW 309
           V  +     
Sbjct: 398 VVDEKKEKA 406


>gi|284993087|ref|YP_003411641.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284066332|gb|ADB77270.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 404

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/309 (18%), Positives = 104/309 (33%), Gaps = 43/309 (13%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T++SY     + ++         I    I +L    +   +        G  +++R  
Sbjct: 62  PTTVRSYRAHVERVIV-------PAIGHVPIEELRAEHVEQLLVD-AANGRGPVTVRRIH 113

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           + ++S L Y  K +    +   N+          +  +  +    + +V      ET  +
Sbjct: 114 ATLRSALSYGVKTRRLPFNVASNVTPPNGIRPEVQPWSAAELAAFLRHV------ETDRL 167

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---------------GKGDKI 197
                 +  ++  CGLR  EAL L   ++     T RI+                     
Sbjct: 168 GP----LFEVIAACGLRRGEALGLRWSDLDLANRTARIRQTIVDVGGRLQFSTPKTRSSE 223

Query: 198 RIVPLLPSVRKAILE-----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
             VPL     +A+L+       D   +    +    +F    G PL P    R    L +
Sbjct: 224 ATVPLTERAVQALLQVRLGQDLDRQGWGGAYHAHDLVFARENGAPLRPEYATRRFVALTK 283

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS---KNGGD 308
             GL      H LRH  A+ +L+ G  +  +  +L H  +  T   Y +++    +   D
Sbjct: 284 AAGL-RWVRLHDLRHGAASLMLAAGVPMAIVSKVLRHSSIGITVDTYGHLSEDTVRTASD 342

Query: 309 WMMEIYDQT 317
            M    +Q 
Sbjct: 343 AMAAALEQA 351


>gi|301310050|ref|ZP_07215989.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3]
 gi|325280034|ref|YP_004252576.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
 gi|300831624|gb|EFK62255.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3]
 gi|324311843|gb|ADY32396.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
          Length = 406

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 59/286 (20%), Positives = 116/286 (40%), Gaps = 26/286 (9%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSLKRSL 92
            T+Q YE  TR    F+    E +++   +  L    I  F +  +  +     S    L
Sbjct: 132 KTVQRYETTTRYLEEFIK--KEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSAITRL 189

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +K  ++   +     +      R  K   + P  L   +       ++L      K +
Sbjct: 190 KNLKKIIRIALENDWIKKDPFAYYR-FKLEETDPEFLTMDEIK-----IILAKEFTIKRV 243

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQG---KGDKIRIVPLLPSVRK 208
           +      ++ ++  GL  S+   L+P++++ D++  L I+    K   +  +P+LP    
Sbjct: 244 EQVRDVFIFCIF-TGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAAS 302

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            + +Y D+      L   LP+    R           Y++++    G+  + + HT RHS
Sbjct: 303 ILDKYKDVAECTGKL---LPVLCNQRM--------NSYLKEIADVCGIHKNLSTHTARHS 351

Query: 269 FATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +AT   L+NG  + ++  +LGH   S T+ Y  V  +N    M ++
Sbjct: 352 YATSVCLANGVSMENVAKMLGHADTSVTKHYARVLDQNILKDMQKV 397


>gi|313149988|ref|ZP_07812181.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313138755|gb|EFR56115.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 396

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 107/291 (36%), Gaps = 27/291 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K TL  Y    +    FL   Y  + I ++ +     ++   F+  R  +     ++  
Sbjct: 115 AKGTLLKYRTVYKHMQEFLDIRYHVKDIALKELTPAFISDFEMFL--RTDKHCCTNTVWL 172

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +  +++ +      +  T         +KK  +    L + +   L++  L +   E  
Sbjct: 173 YVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKDEIRLLMEGKLKNAKQE-- 229

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRI-QGKGDKIRIVPLLPSV 206
                   +       GL  ++  +LT +N     D+   + I + K   +  + LL   
Sbjct: 230 ----LYRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRQKTGVVSNIRLLDIA 285

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            + I +Y  LC           +F          G     IR + +  G+    T H  R
Sbjct: 286 NRIIGKYRGLC-------GDGRIFPVPHYNTCLAG-----IRAVAKRCGITKHITWHQSR 333

Query: 267 HSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           H+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +     M  +  +
Sbjct: 334 HTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMENLAAR 384


>gi|215486887|ref|YP_002329318.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
 gi|291282843|ref|YP_003499661.1| integrase [Escherichia coli O55:H7 str. CB9615]
 gi|215264959|emb|CAS09345.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
 gi|290762716|gb|ADD56677.1| integrase [Escherichia coli O55:H7 str. CB9615]
          Length = 324

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 103/257 (40%), Gaps = 29/257 (11%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNIL 114
           E +    + +L+ T +      R  Q I   ++ R +  + +    L        ++ + 
Sbjct: 90  EAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAMFTALISSGHFLNDNPVQ 149

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            ++ +K +      L++ + + L+D  L     E           + +L   G R  E  
Sbjct: 150 GLKGMKVNEREMGYLSKSECVQLLDA-LAENPDE--------RLAVEILLSTGARWGEVA 200

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +L  + ++  + T   + K  K R VP+  S+ + I                  +F    
Sbjct: 201 ALEQRRVLHCRITFS-KTKNSKNRTVPISESLFEKI-----------KKRGGKLVFPT-- 246

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              L+  + +  I+ +     +P     H LRH+FA+H + NGG++ ++Q ILGH ++ T
Sbjct: 247 ---LDYPLVRDVIKTVA--PDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQT 301

Query: 295 TQIYTNVNSKNGGDWMM 311
           T IY ++      D + 
Sbjct: 302 TMIYAHLAPDYLQDAVR 318


>gi|30020683|ref|NP_832314.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 14579]
 gi|31415821|ref|NP_852561.1| DNA integration/recombination/invertion protein [Bacillus phage
           phBC6A52]
 gi|229127965|ref|ZP_04256949.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BDRD-Cer4]
 gi|29896235|gb|AAP09515.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 14579]
 gi|228655527|gb|EEL11381.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BDRD-Cer4]
          Length = 369

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 58/315 (18%), Positives = 117/315 (37%), Gaps = 39/315 (12%)

Query: 18  RQNWLQNLEIERGLS--KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            +++L +    + +S  K T   Y+        F+  +    I + T+ +L+   I+   
Sbjct: 65  LKDYLNHWLEIKSMSIEKSTFAGYK-------AFINQHVIPSIGMVTLHKLNVIHIQKCY 117

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                + I + S+      +KS L    K+ I + +        KK  +  +   E++  
Sbjct: 118 KTAIDKGIANNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKTPIQTWTEEEVK 177

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
             + +     S E+++      AI       G+R+ E L L  Q+I  ++ T+ I     
Sbjct: 178 KFLAH-----SQESRYHIGYLLAI-----TTGMRLGEVLGLRWQDIDFEKHTVTINQTSG 227

Query: 196 KI-------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-----FRGIRGKP 237
                          R +P+      A+ ++  L   +        L          G+ 
Sbjct: 228 HDNKIKKTAKTNSSKRTIPVPNETIAALKKHKILINKEKLRFGSAYLDQDLINCNEFGRI 287

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
           +    F++   ++   +G+      H LRH+ AT LL  G + + I   LGH  +S T  
Sbjct: 288 IKRAHFRKSFIRMTHKVGI-KEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLS 346

Query: 297 IYTNVNSKNGGDWMM 311
           +Y++V      + + 
Sbjct: 347 VYSHVLPNMQEEAVK 361


>gi|330997657|ref|ZP_08321502.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329570185|gb|EGG51925.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 400

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 102/286 (35%), Gaps = 20/286 (6%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
            +  SY            +     +       ++      +    +T+  G+  +   L+
Sbjct: 123 NSTSSYRQSKSSQAYLHEYLLSLGMRDIAFEDITEDFGWGYKLYLKTKGCGNGHINHCLT 182

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            +   +     R++   + + ++   KK +   + ++  +   +++          +  +
Sbjct: 183 WLNRLIYIAVDREVLRFNPLADIPYEKKPDYKLKHISRAELQRVMEQ-----PMPERLQE 237

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
               A ++  +  GL   +   L P +I    D +  +RI  K   +  +  L  V + I
Sbjct: 238 LTRRAFIFSAF-TGLSYVDVKRLYPSHIGTTADGRRYIRINRKKTDVESLIPLHPVAEQI 296

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           L  Y+        +   P+F       L        I ++    G+  + + H  RHSF 
Sbjct: 297 LSLYNT------TDDGRPVFPLPNRDRL-----WYCIHEIGILAGVKENLSYHASRHSFG 345

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           T  LS G  + SI  ++GH  + TTQ Y  V      + M ++  +
Sbjct: 346 TLTLSVGVPIESISKMMGHTNIRTTQGYAKVTDDKISEDMDKLMAR 391


>gi|323175010|gb|EFZ60625.1| integrase [Escherichia coli LT-68]
          Length = 330

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 41/300 (13%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-----EKITIQTIRQLSYTEIRA 73
           + W      +R LS+L    +  D R      ++         ++       ++   +  
Sbjct: 49  KPWQAKPADQRRLSELLDAWWMLDGRNQAYGDSYRVRLGKVIREMGDPRASHMTRKFMLE 108

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + S++    +   S+ R L  + +     ++       + +  +R LK  N+    L++ 
Sbjct: 109 YRSEKLQAGLMPSSINRDLCVLSTMFTVLIEAEVFHNANPVRGIRKLKVQNTEMAFLSDD 168

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L++            ++     +  L    G R  EA  L  ++I+ ++ T     
Sbjct: 169 EIEQLLE-----------RLEGDARRVAILCLSTGARWREASELRGEHIVGNRVTF-FNT 216

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K  K R VP+  SV                     PL +  R   L   V     R++ +
Sbjct: 217 KNGKSRSVPVADSVV--------------------PLIKTRRTGLL-YQVDYLEFREILQ 255

Query: 253 YL--GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +   LP     H +RH+FATH + NGG++ ++Q ILGH  +  T  Y + +     D +
Sbjct: 256 EVKPDLPKGQATHVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYAHFSPDFLQDAI 315


>gi|281492428|ref|YP_003354408.1| phage integrase [Lactococcus lactis subsp. lactis KF147]
 gi|281376092|gb|ADA65583.1| Phage integrase [Lactococcus lactis subsp. lactis KF147]
          Length = 399

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 103/302 (34%), Gaps = 36/302 (11%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI------------GDRSLKR 90
            RQ    L  Y       + I +++   I+  + +                    +  K 
Sbjct: 93  IRQMRSNLDTYAIPAFGNKRISKITTAHIQKQVIEWAKNAAEPLGGKQKRDVGSGKDYKL 152

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP----RALNEKQALTLVDNVLLHTS 146
            L+ I    ++     I   +   ++   K     P    +   + +   L  +  + + 
Sbjct: 153 QLNVINRIFQHALSLGIIDRNPCHSVIIPKVKIDKPNKEVKFYTKTELSELFSH--IESL 210

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-------------QGK 193
             TKW     +A++ LL   GLRI EA++L   ++  D  T+ +                
Sbjct: 211 DNTKWSTQYFNALIRLLVASGLRIGEAMALEWFDVDLDNQTVSVSKTTVQRTVIQDTPKT 270

Query: 194 GDKIRIVPLLPSVRKAILEYYDL---CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
               R++ +       +  +Y         L    Q  +F   +G  ++       ++++
Sbjct: 271 NKSNRVISIDSKAVSTLKRWYFFQKKHFMSLGNPHQSLVFPTWQGNVMDYHGLNYRLKKI 330

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDW 309
                L  S + H  RHS A+  L+ G   + IQ  LGH  L  T  +Y+++  +     
Sbjct: 331 EDAAKLT-SLSFHGFRHSHASLCLNAGMTYKVIQERLGHSTLQMTMDLYSHLEPEKKNKE 389

Query: 310 MM 311
           + 
Sbjct: 390 LE 391


>gi|225020746|ref|ZP_03709938.1| hypothetical protein CORMATOL_00753 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946519|gb|EEG27728.1| hypothetical protein CORMATOL_00753 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 294

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 68/309 (22%), Positives = 121/309 (39%), Gaps = 42/309 (13%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
            + +E  +  + W  NL   RG+ + T+++     R   +     T   +T + +  + +
Sbjct: 11  PIPYEWHEAIRQWEMNLRA-RGMKESTVETRVKHLRSLALQKVADTPMGVTSKLL--VQW 67

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-RNLKKSNSLPR 127
             ++ +            +       + +F  Y     +  E+    +  ++ + + +PR
Sbjct: 68  AGVKNW---------SPETRHSYYMSLITFFHYYLPTGV--ENPTKEICHSISRPSPVPR 116

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQ 185
              E+     +       +   K  D R + I+ L    GLR SE   L   +       
Sbjct: 117 PAPEEVIREAL-------AKAYKLRDQRPAVIIRLAAELGLRRSEIACLHMTDLKGHVGN 169

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             L I GKG K R++P   ++  AI          ++ +    +F G     L+P    +
Sbjct: 170 RWLVIHGKGGKQRVLPCPETLAHAIK--------SVSSDDNGWVFPGKIDGHLSPRWIAK 221

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSK 304
              ++     L  S T HTLRH FAT   + GG DL +IQ  +GH  ++TTQ YT    K
Sbjct: 222 LATRV-----LAESWTLHTLRHRFATVAYNEGGHDLLTIQQAMGHENIATTQRYT----K 272

Query: 305 NGGDWMMEI 313
              D +  I
Sbjct: 273 YQPDALKAI 281


>gi|289645149|ref|ZP_06477170.1| integrase family protein [Frankia symbiont of Datisca glomerata]
 gi|289505044|gb|EFD26122.1| integrase family protein [Frankia symbiont of Datisca glomerata]
          Length = 366

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/281 (19%), Positives = 106/281 (37%), Gaps = 30/281 (10%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           L  +   +     + ++ + +++A++++    K+  +++      + S +K   + ++  
Sbjct: 85  LRCHLLPQWGEWPLNKIGFLDVQAWVTRLAA-KLSPQTVASCHGILFSIMKAAVRARLIP 143

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
            +    +R   +            A T++    L T      +  R  A++ L    GLR
Sbjct: 144 VNPCEGVRLPPRRKR-------ATAETVITRAEL-TGKLLPELPERYRALVLLAAYTGLR 195

Query: 170 ISEALSLTPQNIMDDQSTLRI---------------QGKGDKIRIVPLLPSVRKAILEYY 214
             E + L    +    + L +                 K +  R    +P +   ++ Y 
Sbjct: 196 WGECVGLRWTRVDLTAAELTVVETAVEVSGKISVKPYPKTEAGRRTVPIPPL---LVAYL 252

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR-QLRRYLGLPLSTTAHTLRHSFATHL 273
                 +       +F    G PL    F+RY+    R   GLP S T H LRH +AT L
Sbjct: 253 RRHREIVPPAPDDLVFPDTVGHPLRRSNFRRYVWVPARGKAGLPTSLTFHALRHCYATWL 312

Query: 274 LSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           +S G  +  +Q  LGH   STT   YT+   K+  D +   
Sbjct: 313 ISEGVPVNVVQVALGHEHASTTLNRYTH-RPKDYHDRLRAA 352


>gi|222446219|emb|CAX33140.1| integrase [Pseudomonas aeruginosa]
          Length = 268

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 104/287 (36%), Gaps = 64/287 (22%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
                +     F  + +   P    +R   +    FQR  ++     
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQA 268


>gi|189462246|ref|ZP_03011031.1| hypothetical protein BACCOP_02932 [Bacteroides coprocola DSM 17136]
 gi|189431048|gb|EDV00033.1| hypothetical protein BACCOP_02932 [Bacteroides coprocola DSM 17136]
          Length = 271

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 64/276 (23%), Positives = 109/276 (39%), Gaps = 25/276 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSLKR 90
           +  TL +Y    R    F+      K+      QL+   IR +       +     +L+ 
Sbjct: 10  APTTLSTYLFTYRTLSEFIKAKF--KVPDLAFGQLNEQFIRDYQDFILLEKGYAVDTLRG 67

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L+ +K   +   K   + + +  + +  K+  S PRALN +    L D  +     E +
Sbjct: 68  YLAILKKICRIAYKEGHSEKYHFCHFKLPKQKESTPRALNRENFEKLRDLEI----PEKR 123

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRI---QGKGDKIRIVPLLPSV 206
                   +       G   ++A+S+T +N+  DD  +L +   + K D +  V LLP  
Sbjct: 124 RSHIITKDLFLFACYTGTAYADAVSITRENLFTDDGGSLWLKYRRKKTDYLGRVKLLPEA 183

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              I +Y D        + +  LF      P +    +  ++ LR   GL      H  R
Sbjct: 184 VALIEKYRD--------DTRETLFP-----PQDYHTLRGNMKALRLMAGLSQDLVYHMGR 230

Query: 267 HSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           HSFA+ +    G  + +I  +LGH  + TTQIY   
Sbjct: 231 HSFASLVTFEEGVPIETISKMLGHSNVRTTQIYARA 266


>gi|158340897|ref|YP_001522065.1| tyrosine recombinase XerC [Acaryochloris marina MBIC11017]
 gi|158311138|gb|ABW32751.1| tyrosine recombinase XerC [Acaryochloris marina MBIC11017]
          Length = 351

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 67/306 (21%), Positives = 119/306 (38%), Gaps = 37/306 (12%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIF--------------------------LAFYTE 55
           L+ + +E+     T + Y  D   F +F                          L+  ++
Sbjct: 21  LRAVLVEKTK-PSTREGYTKDLVDFFLFVTQGEMVYGVEGPKRKSEIKAQVKVELSRLSQ 79

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
             + I  ++ L       +      + +   ++ R LS +KS ++  ++ ++   +    
Sbjct: 80  SFVGIGRLKALELAA--RYRECMMQRGLQANTINRRLSAVKSMVRMARRLEMCDWTLAEV 137

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
                K     R +   Q   ++  V     +      +R+ A+L LL+  GLR SE + 
Sbjct: 138 DGLTVKPYRDTRGITASQFRLMMVFV-----NRFSLAGSRDFAMLTLLWEAGLRRSELVG 192

Query: 176 LTPQNIMDDQSTLRIQGKGDKIR-IVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGI 233
              ++   +Q  L I GKG   R  + L  S   AI E+ +L   + L   + + L R  
Sbjct: 193 CDVRHFDSEQKRLSILGKGRNEREWIDLTESGVLAISEWLELREVYGLTEPLFISLDRAN 252

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRL 292
            G  L+     R +R L +  G+  +   H +RHS  T  L   GGDLR  Q+   H  L
Sbjct: 253 WGSRLSGTSVYRIVRALAKKAGVSENFGPHKVRHSGTTTYLEMTGGDLRGAQAYSRHANL 312

Query: 293 STTQIY 298
           +T + Y
Sbjct: 313 NTLKFY 318


>gi|147678247|ref|YP_001212462.1| integrase [Pelotomaculum thermopropionicum SI]
 gi|147678630|ref|YP_001212845.1| integrase [Pelotomaculum thermopropionicum SI]
 gi|147678993|ref|YP_001213208.1| site-specific recombinase [Pelotomaculum thermopropionicum SI]
 gi|146274344|dbj|BAF60093.1| integrase [Pelotomaculum thermopropionicum SI]
 gi|146274727|dbj|BAF60476.1| integrase [Pelotomaculum thermopropionicum SI]
 gi|146275090|dbj|BAF60839.1| site-specific recombinase [Pelotomaculum thermopropionicum SI]
          Length = 376

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 61/354 (17%), Positives = 126/354 (35%), Gaps = 78/354 (22%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR---------- 79
           G ++ +L+SY    + F  F+             R++S  ++ AF+   +          
Sbjct: 39  GAARNSLRSYCQHLKLFFEFIEQEG------LDYRKISIDDMAAFMRWLQNPYGNLKVIP 92

Query: 80  ----TQKIGDRSLKRSLSGIKSFLKY-LKKRKIT-------------------------- 108
               T   G  ++   +S + +F  Y ++    +                          
Sbjct: 93  VTPVTSPRGPATVNTVISTVLNFYDYLMRHEDYSVQLSERLKKTIPGSRRGFKDFLYHVN 152

Query: 109 -TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
             +     +  +K   S P+ ++++Q   L+D             + RN  ++ LL+   
Sbjct: 153 KDKEYPAKILKVKVRRSRPKTISKEQVGKLIDAC----------SNLRNKFLIQLLWESS 202

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKG-----------DKIRIVPLLPSVRKAILEYYDL 216
           +RI EAL+L  ++   D   + I+ +G              R V + P +     +Y   
Sbjct: 203 IRIGEALALWLEDFEPDGQKIHIRDRGELPNLAEIKTICSPRTVDVSPDLINLFFDYVAE 262

Query: 217 CPFDLNLNIQLPLFRG--IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
              D      + +      R +P+         R+L+   G+    + H LRHS  T L 
Sbjct: 263 FHTDEVDTNHVFIKLSGENRYQPMEYQDVASLFRRLKAKTGI--GVSPHILRHSSLTELR 320

Query: 275 SNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
             G     ++   GH  +  TTQIY + + ++    M + +++    +  K ++
Sbjct: 321 RAGWKPEHLRKRAGHAHVQTTTQIYLHPSDED----MRKDWEKAEEKMRLKRQQ 370


>gi|325299560|ref|YP_004259477.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324319113|gb|ADY37004.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 407

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 55/302 (18%), Positives = 119/302 (39%), Gaps = 29/302 (9%)

Query: 20  NWLQNLE-IERGLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISK 77
           N+L   +      +K  ++  +    +F  FL   Y   + +I+    ++   +  F++ 
Sbjct: 122 NFLDYYQAYINSYTKKDIRMVQIALNRFKDFLKEQYPANEFSIKP-ELITKEMMEQFVAY 180

Query: 78  RRTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQA 134
            +++ +G   +S+ +     K  ++Y     +  +     +     S  L +  L+ ++ 
Sbjct: 181 LQSRSVGEGAKSIFQRF---KKVVRYAIDHDVMLKDPCKGVTCKVDSQILRKDVLSPEEI 237

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--G 192
             L+        H          A ++ LY CGLR  +   LT +N+      L+ +   
Sbjct: 238 QKLI------ACHYDNENPTVRRAFIFCLY-CGLRFCDVKDLTYKNVDYANRLLKFEQSK 290

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
                    ++  +   +L      P D N L   LP +              + +++  
Sbjct: 291 TKGHSASSGVVIPLNDGLLSIIGEAPADKNCLIFDLPSYESCC----------KSVKRWV 340

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +  G+    + H  RHSFA ++L+NG +++++ S+LGH  L  T+ YT    K   + + 
Sbjct: 341 KRAGIDKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLKEEAIN 400

Query: 312 EI 313
            +
Sbjct: 401 SL 402


>gi|260910292|ref|ZP_05916967.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260635594|gb|EEX53609.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 419

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 62/316 (19%), Positives = 127/316 (40%), Gaps = 37/316 (11%)

Query: 14  LLKERQNWL----QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLS 67
           LL+    +L    + + I+R L    L++Y+      L  L  Y ++K  +  I   QL 
Sbjct: 110 LLESFGEYLTQTKERIGIDRALKTFKLRTYQ------LSLLREYVQKKHKVSDIPLSQLD 163

Query: 68  YTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
              I  F       +K+   S+  +LS +++ ++   K+ +          + ++    P
Sbjct: 164 NAFIEGFEYYLTIDRKLKRSSISSALSTLQTIVRMAVKKGVLDFYPFWGY-SYERPKGEP 222

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R++ +++   +++  +   ++           +       GL IS+  +L  +NI+ ++ 
Sbjct: 223 RSITKEELERIIELEIEWENYRIV------RDLFVFSCFSGLAISDVRNLREENIVLEEG 276

Query: 187 TLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
            L I+G   K +    V +LP     +  Y       +                    + 
Sbjct: 277 ELCIKGSRMKTNPPYRVQVLPPAWAIMERYIGKRAGFIFDVP-------------TTDII 323

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              +  ++R +G+    T H  RH+F+T   LSNG  + ++  +LGH  + TTQIY  + 
Sbjct: 324 LNGMHFIQRNIGMEGPLTFHKARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKIT 383

Query: 303 SKNGGDWMMEIYDQTH 318
                + M  + D+ H
Sbjct: 384 DHKIQEDMTALTDREH 399


>gi|257898367|ref|ZP_05678020.1| phage integrase [Enterococcus faecium Com15]
 gi|257836279|gb|EEV61353.1| phage integrase [Enterococcus faecium Com15]
          Length = 378

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/302 (17%), Positives = 113/302 (37%), Gaps = 39/302 (12%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            L   T ++Y    +        +    +  + +  LS   ++ FI+    +    +++ 
Sbjct: 79  NLKYNTYENYRFTIK-------NHINGYLGKKKLTDLSPALLQNFINAEFKKGYSKKTMT 131

Query: 90  RSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQALTL--VDNVLLHTS 146
            + S +K+ L        +  ++ +L ++  K     P    + + ++L   D++L  T 
Sbjct: 132 ITHSVLKNALNMAVYPWGLIKQNPMLYVKIPKYEER-PTTKKDLKIISLEDFDHMLEITP 190

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG------------ 194
               +        L + +  G+R+ E   LT  N+     T+ ++ +             
Sbjct: 191 EGHPFYIP-----LNIGFYTGMRVGEVCGLTWDNVDFSNGTITVEKQMVKNDGAWVYGTP 245

Query: 195 ---DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-----LNPGVFQRY 246
                 R + +  ++   + ++      +     +L +             + P V +  
Sbjct: 246 KTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCTKEDGGLVTPSVVKWN 305

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKN 305
            R++   L L  +   H+LRH+ AT LL NG  ++ I   LGH R+S T   Y++V  K 
Sbjct: 306 TRRISNALSLSFN--FHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKM 363

Query: 306 GG 307
             
Sbjct: 364 RN 365


>gi|16519922|ref|NP_444042.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
 gi|2497421|sp|P55637|Y4RD_RHISN RecName: Full=Putative integrase/recombinase y4rD
 gi|2182601|gb|AAB92470.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
          Length = 281

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 87/261 (33%), Gaps = 15/261 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + + L  +R  +  T+ SY    R  ++F A    +K     + +L    I AF+ +   
Sbjct: 15  FRRRLTKQRNATPATMASYRDALRMLILFAATRLRKKPAALVLEELDRDLILAFLDELEE 74

Query: 81  QKIGD-RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA---LNEKQALT 136
           ++     +    L+ I+SF  ++      +      +  +    +       L + +   
Sbjct: 75  KRNNTIATRNARLAAIRSFFHHVAAADPASFGVAQRVLTIPIKRAHIEVTHHLTKAEVDA 134

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L++       +       R+   L  L   G R+SEA  +   ++  ++S  ++  +G  
Sbjct: 135 LIE-----APNPRTPRGRRDRTFLLFLARTGARVSEATGVNANDLQLERSHPQVLLRGKG 189

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG- 255
            R   +      A      L    +  +   P+F G R + L        +R+       
Sbjct: 190 RRDRVIPIPQDLARALTALLAEHGIANHEPRPIFVGARNERLTRFGATHIVRRAVAQAVT 249

Query: 256 -----LPLSTTAHTLRHSFAT 271
                     + H  RH    
Sbjct: 250 IRPTLAQKPISPHIFRHYLPH 270


>gi|42780062|ref|NP_977309.1| Tn554-related, transposase A [Bacillus cereus ATCC 10987]
 gi|42735980|gb|AAS39917.1| Tn554-related, transposase A [Bacillus cereus ATCC 10987]
          Length = 384

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/376 (15%), Positives = 129/376 (34%), Gaps = 92/376 (24%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            ++++L      S  TL++Y    + +  +L             +Q+++  +  ++   R
Sbjct: 29  KYMKHLYNNESKS-NTLKTYCTALKHYFTYLQQIKI------DYQQVNFEILSNYVVWLR 81

Query: 80  T----------------------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL--- 114
                                  +++ ++++   +S + +F  YL + ++     +    
Sbjct: 82  NPYRNNKVIPYKIPQKHNKEKEPKQLTEKTVNNYISAVTNFYDYLYRSELIDSDIVEKLM 141

Query: 115 ---------------------------NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
                                      N+  LK+     +   ++Q  T+  +       
Sbjct: 142 KKMFTGAGGNGYKSFLHHVNEGKPYSKNILKLKEPKEKIKIFTKEQVETIYHST------ 195

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK-------------G 194
                + R+  ++ LL+  GLRI EALSL  ++   D    + + K              
Sbjct: 196 ----TNIRDRFLVLLLFETGLRIGEALSLFLKDFQFDAKQRKHKLKLTDRGELPNGGKLK 251

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQLR 251
              R + +  S+     +Y      D N +       LF    G+P+         +++ 
Sbjct: 252 TGSRELEISQSLMNLYDDYLYEVIDDYNPDHNFVLVKLFGKNSGEPMTYSDVYATFKEIE 311

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           R  G+    T H  RH+  T       +++ +Q  LGH ++ TT  +Y + +     D +
Sbjct: 312 RKTGI--YITPHLFRHTHGTIYYLETKNIKMVQERLGHSQVQTTINLYVHPSD----DAI 365

Query: 311 MEIYDQTHPSITQKDK 326
            E +++   +     K
Sbjct: 366 REDWEKAAHAFKIGPK 381


>gi|332977017|gb|EGK13826.1| integrase/recombinase XerD [Desmospora sp. 8437]
          Length = 207

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 78/205 (38%), Gaps = 12/205 (5%)

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
           L +   + +  LP    E +     + V        K  + ++  I+  L   G+R+SE 
Sbjct: 12  LEIDVPRANKKLPYVPTEDEIKRYYEAV-------WKAKNFQDMMIIKTLLYTGVRVSEL 64

Query: 174 LSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
           +++   +I   +  +R+  GKG K RIVP       A  E   +          + LF  
Sbjct: 65  INIKLSDIDFQRCQIRVNEGKGKKDRIVPFP----TAFKELLAMHADSTEKKGAVYLFES 120

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
              K       ++ +++     G+  S + H LRH   T L   G D   IQ   GH   
Sbjct: 121 SWKKKYTDRGIRKILKKYSDQAGMAQSISPHKLRHFLLTWLKKQGIDDALIQPYSGHASR 180

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQT 317
            + ++Y+ +   +  D    +  + 
Sbjct: 181 KSLEVYSKLTITDAQDEYERVIPEF 205


>gi|218263932|ref|ZP_03477873.1| hypothetical protein PRABACTJOHN_03563 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222401|gb|EEC95051.1| hypothetical protein PRABACTJOHN_03563 [Parabacteroides johnsonii
           DSM 18315]
          Length = 370

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 55/259 (21%), Positives = 106/259 (40%), Gaps = 29/259 (11%)

Query: 62  TIRQLSYTEIRAFISKRRT------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           T   L+    + F++   +       K+   +   +L+ +K  L+   + +   E+    
Sbjct: 129 TFDDLTLEYCQGFLTYLLSLTTQTKGKMMASTANNNLNKLKCVLRIAYEERRIKENIAPR 188

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +++ K+ ++    L  ++       +L  T  E   I +  +A+   L   GLRIS+ + 
Sbjct: 189 LKHAKEDSTRREFLTLEEVR-----MLAETPCEKPVIRS--AALFSCL--TGLRISDIIR 239

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR-KAILEYYDLCPFDLNLNIQLPLFRGIR 234
           L  +NI        I+G      +  +    R +A+L   D          +  +F+G  
Sbjct: 240 LQWENI--------IRGADGGWCMHIVTKKTRTEAVLPLSDEALALCGERGEGQVFKG-- 289

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              L   +   Y++   +  G+    T H  RH++AT  L+ G DL +I  +L H  + T
Sbjct: 290 ---LTKTILPLYLKDWIKSAGIRKHITFHGFRHTYATLQLAAGTDLYTISKMLTHSNVGT 346

Query: 295 TQIYTNVNSKNGGDWMMEI 313
           TQ+Y +V S        +I
Sbjct: 347 TQVYVDVVSDLKRKASEQI 365


>gi|295841235|dbj|BAJ07014.1| integrase [uncultured bacterium]
          Length = 395

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/291 (16%), Positives = 100/291 (34%), Gaps = 60/291 (20%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-T 80
           L+     R  S  T+++Y    R++   L            +      +++AF+      
Sbjct: 127 LRRCLASRRYSPRTVETYTLWVRRYFGSLRDRN--------LSSPDRDQVKAFLEDLVLR 178

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q++ + + K +L+ +  F   +         ++    +  +   LP  LN ++   L+  
Sbjct: 179 QRLAEGTQKLALNALAFFFGEVLN---IPLGDLGGFAHSTRPRRLPVVLNRRETEALL-- 233

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--------- 191
                       +   + ++ L+YG GLR++EA+ L  +++  ++  + ++         
Sbjct: 234 ---------AATEGVCALVIGLMYGSGLRLTEAVRLRVKDVDFERRHITVRDGKGAKDRI 284

Query: 192 ----------------------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
                                       GKG       L     +A  ++     F  + 
Sbjct: 285 TVLPERFHGPLERHLARTKDTHSEDLKSGKGAVTFWPALARKYPRAPQQWGWQYIFPASR 344

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
               P    +    L+    QR +       G+    T H+LRH+ ATHLL
Sbjct: 345 LTVDPGTGRVVRHHLHQSSVQRAVGVAASRAGIHKRVTCHSLRHTLATHLL 395


>gi|290474039|ref|YP_003466913.1| integrase [Xenorhabdus bovienii SS-2004]
 gi|289173346|emb|CBJ80123.1| Integrase [Xenorhabdus bovienii SS-2004]
          Length = 354

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 87/233 (37%), Gaps = 33/233 (14%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTE-SNILNMRNLKKSNSLPRALNEKQALTLVD 139
           + +   ++   L+  ++    L +       + + N+R           L+ +Q +TL++
Sbjct: 122 KPVAPSTVNNELAYFRAMFNELHRLGEWKAGNPLKNIRAFNTGEKEMAFLSNQQIITLLN 181

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                 + +          I+ +    G R SEA  LT   I   + T   + KG + R 
Sbjct: 182 FCAKSRAKDL-------LIIVKIALSTGARWSEAAGLTDSQITPYKITFT-KTKGKRNRT 233

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--P 257
           VP+   +   I               +  LF                 R   +  G+  P
Sbjct: 234 VPITKELYDEI------------PKRKGKLFSSC----------YNAFRTAVKQAGIELP 271

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              ++H +RH+FA+H + +GG++  +Q ILGH  +  T  Y +    +  D +
Sbjct: 272 SHQSSHVMRHTFASHFMMSGGNIIVLQRILGHTDIKMTMRYAHFAPDHLNDAL 324


>gi|254362755|ref|ZP_04978838.1| possible integrase/recombinase [Mannheimia haemolytica PHL213]
 gi|261492677|ref|ZP_05989227.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261495898|ref|ZP_05992322.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|153094383|gb|EDN75234.1| possible integrase/recombinase [Mannheimia haemolytica PHL213]
 gi|261308442|gb|EEY09721.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261311663|gb|EEY12816.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 267

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 53/287 (18%), Positives = 108/287 (37%), Gaps = 34/287 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            L++ T  +Y    +Q+                + +++    + F+     +    +++ 
Sbjct: 13  NLAENTQSAYLFAVKQYHK----------KFDQLSKINLQRYKVFLI----ENYKPQTVN 58

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             L  I  +L+++KK K       L+   +++   L   ++E           L   +E 
Sbjct: 59  LRLRAINYYLEFIKKEKWK-----LSFVKVQQKPFLENVISEADYTYF--KKCLKKDNEL 111

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
            W       ++  +   G R+SE + +  ++I      L +  KG K+R + +  S++K 
Sbjct: 112 YW-----YFVIRFMAATGSRVSELIQIKCEHI--KIGYLDLYSKGGKLRRIYIPKSLQKE 164

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHS 268
             E+       LN      +F    G  +        ++   R   L P     H+ RH 
Sbjct: 165 CSEWL-----RLNNKHNGFIFLNKYGDRITTRGIASQLKVFARRYKLDPKIVYPHSFRHR 219

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           FA   L    D+  +  ++GH  + TT+IY    S    + + +I D
Sbjct: 220 FAKSFLERFNDIAFLADLMGHESIETTRIYLRKTSTEQQEIVNKIID 266


>gi|152965657|ref|YP_001361441.1| phage integrase family protein [Kineococcus radiotolerans SRS30216]
 gi|151360174|gb|ABS03177.1| phage integrase family protein [Kineococcus radiotolerans SRS30216]
          Length = 402

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/282 (17%), Positives = 102/282 (36%), Gaps = 32/282 (11%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           R +L  +A      +    +  LS  ++  ++++   + +  +++K   + + S L    
Sbjct: 113 RDYLQMIAISIGPALGNIPLAVLSRDDVTGWVNEMERRGLSGKTIKNRHAFLSSGLTRAV 172

Query: 104 KRKITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
              +   +    +R  ++      P  L   +   L              +      +L 
Sbjct: 173 GVHL-PTNVAKGIRLPRQDAKTREPVFLTPDEYRAL-----------ELAMHPIGRPLLL 220

Query: 162 LLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKI------------RIVPLLPSVR 207
           L+ G G+RI EA +L   ++        +R+                   R      ++ 
Sbjct: 221 LMAGTGMRIGEATALQVGDVDLTGRDPVVRVVRAWKHTDNNTQELGPPKSRKGKRSIALS 280

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ-RYIRQLRRYLGLPLSTTAHTLR 266
            A+ +Y            +  +    RG       ++ +Y     +  G+  S T H +R
Sbjct: 281 DAVADYL--ADLTAGRGPKEWVVTTSRGDAWRANYWREKYWHDAVKRSGIGKSPTPHDIR 338

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGG 307
           HS A+ L++ G  L  IQ+ LGH +++TT   Y +++S    
Sbjct: 339 HSHASWLIAQGVVLPVIQARLGHEKITTTVDTYGHLSSDMHR 380


>gi|332090863|gb|EGI95955.1| integrase [Shigella boydii 5216-82]
          Length = 323

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 104/257 (40%), Gaps = 29/257 (11%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNIL 114
           E +    + +L+ T +      R  Q I   ++ R +  + +    L        ++ + 
Sbjct: 90  EAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAMFTALISSGHFLNDNPVQ 149

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            ++ +K +      L++ +++ L+D  L     E           + +L   G R  E  
Sbjct: 150 GLKGMKVNEREMGYLSKSESVQLLDA-LAENPDE--------RLAVEILLSTGARWGEVE 200

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +L  + ++  + T   + K  K R VP+  S+ + I                  +F    
Sbjct: 201 ALEQRRVLHCRITFS-KTKNSKNRTVPISESLFEKI-----------KKRGGKLVFPT-- 246

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              L+  + +  I+ +     +P     H LRH+FA+H + NGG++ ++Q ILGH ++ T
Sbjct: 247 ---LDYPLVRDVIKTVA--PDIPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQT 301

Query: 295 TQIYTNVNSKNGGDWMM 311
           T IY ++      D + 
Sbjct: 302 TMIYAHLAPDYLQDAVK 318


>gi|146307138|ref|YP_001187603.1| phage integrase family protein [Pseudomonas mendocina ymp]
 gi|145575339|gb|ABP84871.1| phage integrase family protein [Pseudomonas mendocina ymp]
          Length = 335

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQAL 135
                 I  ++L   L  +K+    L +       + +  +R L+        L+  Q  
Sbjct: 111 ALLKAGIQGKTLNNRLGYLKAMFNELHRLGDIDYPNPLAKVRPLRLQERPISFLSTCQIA 170

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+D +   T+     +      I  +    G R  EA +LTP+ + +   T     K  
Sbjct: 171 ELLDALDERTTSPGIGL------IARVCLSTGARWGEAQALTPERVRNGMVTF-ANTKSK 223

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           + R +P+  ++ KA+  Y+              LF            F R + +      
Sbjct: 224 RTRSIPIDSALEKALHVYFKRHG----------LFTNCML------TFSRVLEKTSIK-- 265

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           LP     H LRH+FA+H +  GG++ ++Q ILGH  L+ T  Y +++  +  D +
Sbjct: 266 LPAGQATHVLRHTFASHFVMRGGNILTLQKILGHTSLAMTMRYAHLSPDHLQDAL 320


>gi|225572883|ref|ZP_03781638.1| hypothetical protein RUMHYD_01074 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039748|gb|EEG49994.1| hypothetical protein RUMHYD_01074 [Blautia hydrogenotrophica DSM
           10507]
          Length = 397

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 53/300 (17%), Positives = 102/300 (34%), Gaps = 38/300 (12%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           +Q    +    E+K+  ++I  +  ++ + +  + + +     ++      +K+      
Sbjct: 104 KQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMKDKGFSYNTINNHKRSLKASFYIAI 163

Query: 104 KRKITTESNI--LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
           +     ++         L+       AL E+Q   L+  +     +   + D      + 
Sbjct: 164 QDDYVRKNPFDFKLSEVLENDTKEKVALTEEQEQALLSFIKTDNVYHKYFDD------VL 217

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPS 205
           +L   GLRISE   LT  ++  +   + I                       R VPL   
Sbjct: 218 ILLKTGLRISELCGLTIMDVDFNHEVVIIDHQLLKSKEQGYYIETPKTKSGTRQVPLSEE 277

Query: 206 VRKAILEYYDLCPFDLNL---NIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYL 254
             KA        P             LF   +GKP        L   + ++Y +  +   
Sbjct: 278 TIKAFQRLMKKRPKAEPFVIDGRGNFLFVNQKGKPKVAIDYNALFVRMVKKYNKHHKD-- 335

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
                 T HTLRH+F T L S   + + +Q I+GH  +S T   Y + +       +  +
Sbjct: 336 NPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQRL 395


>gi|220930678|ref|YP_002507587.1| integrase family protein [Clostridium cellulolyticum H10]
 gi|220001006|gb|ACL77607.1| integrase family protein [Clostridium cellulolyticum H10]
          Length = 423

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 63/337 (18%), Positives = 123/337 (36%), Gaps = 44/337 (13%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L+   Q W +  +  + L   T   YE    +   +        I    ++ LS   I+ 
Sbjct: 94  LIVWCQEWYETYKEPK-LKTNTRLKYETSITRLKRY-------SIADMQLKNLSLELIQK 145

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK-----SNSLPRA 128
             ++     + + ++K + S +   L+  +      ++   ++   +        S  +A
Sbjct: 146 DYNRMAKDGLSEETIKATHSLVNGALEKAEALNKINKNPARHVTIPRTDEDDAEESNTKA 205

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           LN+ Q    +D  L      +K+         + +   GLR  EAL+LT  +I    + +
Sbjct: 206 LNDTQ----LDAFLYQIGRRSKYFMYA-----FFMLNTGLRPGEALALTRSDIDFTTNKI 256

Query: 189 RIQGKG--------------DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           ++                     R VP+   +   + EY              PLF+   
Sbjct: 257 KVTKTYIEKLKKVQNSTKTASSRRKVPIPSEMISLLKEYMLQ---QPKKEPTDPLFQTAT 313

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           GK  + G  ++  +      G       HT+RH+FA+ L     D++ I  +LGH  +ST
Sbjct: 314 GKRPSQGYLRKRFKYAGASAGCEW-VNLHTMRHTFASRLFKKKVDIKVISELLGHKDVST 372

Query: 295 T-QIYTNVNS---KNGGDWMMEIYDQTHPSITQKDKK 327
           T  IY +      +     +     +  P+ ++K +K
Sbjct: 373 TYDIYVHFIDNIVEESVQVLNSDIPENLPTKSRKGEK 409


>gi|146301384|ref|YP_001195975.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146155802|gb|ABQ06656.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 305

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 64/276 (23%), Positives = 116/276 (42%), Gaps = 31/276 (11%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-------IGDRSLKRS 91
           Y+    +FL++L     E+  I  I+ ++  E   ++    ++        + ++++K  
Sbjct: 34  YKNIITEFLVWL-----EQAGISRIQNVASKESVRYLDYLSSRPKKRGNGILAEKTIKLH 88

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L     F  YL + K     N   + ++      PR +   + + LV +           
Sbjct: 89  LFVQGLFQVYLLENKEIQ--NAYYIPSITGGTQKPRNILTIEEIKLVYHH---------A 137

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAI 210
            +    A+L + YGCGLR SE  SL  +++   +  L ++ GKG+K R VP+  +V + +
Sbjct: 138 ENEMEKALLSIAYGCGLRRSEIASLDLKDVNLIKGMLVVRQGKGNKRREVPMSDTVLQYL 197

Query: 211 LEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG----LPLSTTAH 263
            +Y      +        +   F   RG+          + ++    G    +    T H
Sbjct: 198 TKYVRDERPERLTGRNQNEEAFFINSRGRRSTGENLNEILNKMIEQTGKFELVQKEITLH 257

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            LRHS A HL  N   +  I+S LGH +++TT IY 
Sbjct: 258 CLRHSIAFHLAENNAGIDFIRSFLGHTQINTTYIYA 293


>gi|194439346|ref|ZP_03071424.1| integrase [Escherichia coli 101-1]
 gi|194421708|gb|EDX37717.1| integrase [Escherichia coli 101-1]
 gi|323978493|gb|EGB73576.1| phage integrase [Escherichia coli TW10509]
          Length = 329

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 61/298 (20%), Positives = 116/298 (38%), Gaps = 37/298 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-----EKITIQTIRQLSYTEIRA 73
           + WL+    +R LS L    +E   R         T      +++    + Q++   + A
Sbjct: 49  KEWLEKPTEQRHLSDLLPLWWELGGRNKPYANGVLTRLKKIIKEMNDPRVSQINARFMAA 108

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEK 132
           + S R +  + + +++R  S +      L        E+ +  + +LK+ +     L  +
Sbjct: 109 YRSSRLSLGVKESTVRRDESDLGGMFTLLANAGEFHGENPLRALPSLKRKSPEMTYLTTE 168

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           +   L+D            +      I  L    G R  EA +L  ++I++++ T   + 
Sbjct: 169 EIAKLLDA-----------VSGDARRITLLCLSTGARWGEAKNLRAEHIINNRVTFN-KT 216

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K  K+RI+P+   V   I        FD+N      + R ++                  
Sbjct: 217 KNGKVRIIPVSDEVVSEIKTKKSGLLFDVNYEEYRKVLRSVKPD---------------- 260

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              LP     H LRH+FA H + NGG++ ++Q I+GH  +  T  Y ++      D +
Sbjct: 261 ---LPKGQAVHVLRHTFAAHFMINGGNILTLQRIMGHATIQQTMTYAHLAPDFLQDAI 315


>gi|298241163|ref|ZP_06964970.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297554217|gb|EFH88081.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 320

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 58/293 (19%), Positives = 101/293 (34%), Gaps = 29/293 (9%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T   Y    RQF  ++A   +EK        L+   I  ++    +Q       KR  S 
Sbjct: 35  TRAVYMSILRQFTQWVAERAKEKEGF-HPDHLTAPVIERYLFDLSSQGYSYAHCKRVKSV 93

Query: 95  IKSFLKYLKKR-KITTESNILNMRNLK---KSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           I  F ++     ++  ++    ++  +      + PR L+ +Q   L         +  K
Sbjct: 94  ITHFCQWFVDEQRMLPQNPARGVKLARSSASEPTPPRTLSPQQRSIL--------QNLVK 145

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRK 208
             D R  A+  L Y  G R+++   L  ++         L +     ++R + L+   R+
Sbjct: 146 QGDLRGQALFALGYWAGCRVTDLTHLLMEHTHVGGKSGWLHLGEPSSRVRDIDLVNEARR 205

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-----GLPLSTTAH 263
           A+  Y      D        +F   R   L+      + R L++        +    + H
Sbjct: 206 ALYAYLQKRARD---ESSPYIFPSQRSTRLSEAGLHHWFRSLKQQATPEEYAVIADISFH 262

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFR------LSTTQIYTNVNSKNGGDWM 310
            LR  FA   L  G  L  +   LGH        L TT  YT        + +
Sbjct: 263 DLRDDFAHRALLAGWTLEEVAYYLGHVTKSGTPALQTTLRYTQTTRAQVKEKL 315


>gi|297618972|ref|YP_003707077.1| integrase family protein [Methanococcus voltae A3]
 gi|297377949|gb|ADI36104.1| integrase family protein [Methanococcus voltae A3]
          Length = 322

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 58/314 (18%), Positives = 126/314 (40%), Gaps = 27/314 (8%)

Query: 13  ELLKERQNWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           E       +L++ E ER   G    T++    D  +  +FL F  +     + + +L+Y 
Sbjct: 19  EFSLNIDKYLKDFEKERRFDGRKSSTIKG---DLIKTKVFLDFVND--TIKKPLNELNYK 73

Query: 70  EIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLK--KRKITTESNILNMRNLKKSNSLP 126
           +   F    +  +K+   +  R  + +K F +  +        E +    R  +      
Sbjct: 74  DFVEFFYYLQEDRKVSRNTQNRYYNILKVFFRINRLDVMNEFIEDSSERKRFKRIEYKHY 133

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
               +++   +++ +L  TS  T++   RN+ ++ LL+    RI E L++  +++   ++
Sbjct: 134 DVCTKREYEAIINQILHKTSSNTRF---RNALVVKLLWETSARIGEILNVKIKDVNFKEN 190

Query: 187 TLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
           T+R+   KG + RIV       + I    ++       N +  LF   +   L  G   R
Sbjct: 191 TIRLTDTKGYEERIVVFSNGSLELIKTILNV----DKRNKERYLFESEKNNQLYKGSVNR 246

Query: 246 YIRQLRR------YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
             ++  +       +        H++RH   + LL     +  ++  +GH  + TT IY 
Sbjct: 247 AFKEAIKVLKENGTIDSSKRIVIHSIRHGRISELLD-TLPIDLVKEYVGHKSVKTTMIYA 305

Query: 300 NVNSKNGGDWMMEI 313
           + + +     + E+
Sbjct: 306 H-SKERLNAQLNEV 318


>gi|323946286|gb|EGB42318.1| phage integrase [Escherichia coli H120]
          Length = 335

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 65/331 (19%), Positives = 118/331 (35%), Gaps = 59/331 (17%)

Query: 8   EIVSFE--LLKER--QNWLQNLEIERGLSKLTLQSY------ECDTRQFLIFLAFYTEEK 57
           E ++FE   ++E   + WL   E  R LS+L    Y        D ++ +  L       
Sbjct: 23  EAIAFESFTMEEVNKKPWLGEKEDRRHLSELIELWYSLYGQTLADPKRLMAKLRIIC-NG 81

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKI-----------GDRSLK---RSLSGIKSFLKYLK 103
           +      +L+  E   +   R   ++             R++    R+LS +  F    K
Sbjct: 82  LGDPIASELTAGEFTKYREARLKGEVRNEDGTLMSPVKPRTVNLEQRNLSSV--FGTLKK 139

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
               +  + +  +   K +      L  ++   L+D      S            I  + 
Sbjct: 140 LGHWSAPNPLAGLPTFKIAEGELAFLTPEEIKRLLDACADSQS-------PSLLMIAKIC 192

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
              G R SEA +L   + +        + KG K R VP+   + + +             
Sbjct: 193 LATGARWSEAENLQ-SHQVSKYRITYTKTKGKKNRTVPISKDLYEEL------------- 238

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLR 281
               P  RG    P      ++   +  +  G+  P     H LRH+FA+H + NGG++ 
Sbjct: 239 ----PKNRGKLFTPC-----RKAFERAVKRAGIELPEGQCTHVLRHTFASHFMMNGGNIL 289

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            ++ ILGH  +  T IY +    +  D + +
Sbjct: 290 VLRDILGHVDIKMTMIYAHFAPDHLEDAVTK 320


>gi|291526261|emb|CBK91848.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 376

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/324 (18%), Positives = 114/324 (35%), Gaps = 54/324 (16%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           RGL   T ++Y+     F+  +       I  + I  L  ++I+ + +    ++ +   +
Sbjct: 50  RGLKNNTFENYKYMYNTFVRPV-------IGSKRISTLKKSDIKKYYNYLVDERNLKPST 102

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ-ALTLVDNVLLHTS 146
           +    + +   L+          +   N+  L++        +EK+ ALT  +  L    
Sbjct: 103 IDNIHTVLHQVLQIAVDDDFIRNNPSDNV--LRELKKAHCFQSEKRRALTKPEQELFLNF 160

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK------------- 193
            +T         +  ++ G GLR+ E   L   +I  +   + +                
Sbjct: 161 LKTHPAYEHWYPVFAVMIGTGLRVGEVTGLRWCDIDMESGMIDVNHTLVYYDHRTEGSKS 220

Query: 194 -----------GDKIRIVPLLPSVRKAI------LEYYDLCPFDLNLNIQLPLFRGIRGK 236
                         +R VP+L  VR+A        E   L            +F    G+
Sbjct: 221 GCYFNVNTTKTPASMRQVPMLGFVREAFEQEKQKQEDLGLHCEVTIDGYTDFIFINRFGQ 280

Query: 237 PLNPGVFQRYIRQLRRYLG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
             +     + IR++ R               L    + H+LRH+F T +   G +++ IQ
Sbjct: 281 AQHQATLNKAIRRIIRDCNDEQFLHSDEPDVLLPHFSCHSLRHTFTTRMCEAGVNIKVIQ 340

Query: 285 SILGHFRLSTT-QIYTNVNSKNGG 307
             LGH  +STT  IY +V  +   
Sbjct: 341 DALGHSDISTTLNIYADVTKEMKA 364


>gi|325678186|ref|ZP_08157815.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324110078|gb|EGC04265.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 324

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/279 (17%), Positives = 117/279 (41%), Gaps = 22/279 (7%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           +I    +++LS  +I+  ++   ++     ++K++   +KS LK  + R+   ++ I  +
Sbjct: 46  RIGTIKMKKLSSDDIQIMLNSL-SEVYSHSTVKKAYVNLKSCLKMAEIREDIKKNPIHAV 104

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              + ++    +    + + ++ +  + T     +       I+ LL   G+R+ EAL+L
Sbjct: 105 VLPRNTSPNEVSFYSAEQVQMIVSEAVSTYKNGTFKYRYGYLIV-LLLNTGMRLGEALAL 163

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE---YYDLCPFDLNLNIQLPLFR-- 231
             +++   + ++ I    + ++      S  K I        +    LN N    L +  
Sbjct: 164 QWEDVDWPKRSIHICKNVENVKSRNGDKSYTKIIQMPKSDKSVRRIPLNDNAMDALVKLN 223

Query: 232 -------------GIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG 277
                           G  ++ G  +R ++ +    G+   +   H LRH+FAT L+  G
Sbjct: 224 SMQAEMNCKLVVATENGNYVDGGNVRRTMQSILNNCGIHGKTDIVHALRHTFATLLIRRG 283

Query: 278 GDLRSIQSILGHFRLSTTQI-YTNVNSKNGGDWMMEIYD 315
            D++ +  +LGH  ++ T   Y +V  +     + ++ D
Sbjct: 284 VDIKMVSELLGHSDVTITMKFYYHVVEEQKNTAIRKLDD 322


>gi|296163435|ref|ZP_06846188.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886323|gb|EFG66188.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 392

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 63/345 (18%), Positives = 112/345 (32%), Gaps = 53/345 (15%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           +I +   ++  + WL     E   S  TL+SY  +  + L++      + ++  ++ +  
Sbjct: 35  QIAADTDVEAVRLWL----AEYSASPHTLRSYRKEAIRLLLWATQTLGKPLS--SLTRED 88

Query: 68  YTEIRAFISK------------------RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +     F++                        + +RS  ++L  +   + YL       
Sbjct: 89  FLLYERFLAAPTGDWADPERPRRGRTRRLFEGPLSERSQHQALGILSGLMTYLVSAGYLA 148

Query: 110 ESNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
            + +   R               L  AL     L  V+     T  + +  +     ++ 
Sbjct: 149 GNPLALRRGRTTSARRSRRVERYLEHAL-WDHVLASVEQWPRLTERDEQHYERS-RWLIR 206

Query: 162 LLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-- 217
           LLY   LR+SEA      +    +    L + GKG     VP+  ++      Y      
Sbjct: 207 LLYHTALRVSEAAHAKAADFYQRRGKWWLHVVGKGGAEGEVPVGDALMADFARYRAFHGL 266

Query: 218 ---PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG-----LP-------LSTTA 262
              P        +    G   + L P      +R + R        +           + 
Sbjct: 267 SPVPAASETGPAVMSIAGDDARHLTPAAIYLIVRDVFRRAADALDAIDPIGATTLRRAST 326

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           H LRHS A+H    G DLR IQ  L H  + TT IY +       
Sbjct: 327 HWLRHSAASHQADAGTDLRFIQKNLRHASIETTGIYLHAEDDRRH 371


>gi|50121562|ref|YP_050729.1| phage integrase [Pectobacterium atrosepticum SCRI1043]
 gi|49612088|emb|CAG75538.1| phage integrase [Pectobacterium atrosepticum SCRI1043]
          Length = 328

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 98/255 (38%), Gaps = 32/255 (12%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILN 115
           ++ +    QL+   I  +   R  + +   S+ R  + +   F K ++  +  ++    +
Sbjct: 95  EVGVIRADQLTKKAILDYRVNRLNEGLKPSSVNRHHAILSGMFTKLIEADEYHSQHPFKD 154

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           ++ LK+  +    L   +   L+             +D  N   + +    G R  E  +
Sbjct: 155 VKQLKEQQAEMAFLTAGEIEDLLQ-----------LLDGDNRKAVLVCLATGGRWGEVAN 203

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           L  ++I+++  T  ++ K  K R +P+ P++   I           N +      R ++ 
Sbjct: 204 LKCEHIINNMLTF-MKTKNGKRRTIPISPALMTQIKHAKTGFVCHPNYDAVRNTLRAMKP 262

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                               LP     H  RH+FATH + NGG++ ++Q ILGH  +  T
Sbjct: 263 D-------------------LPDGQALHVFRHTFATHFMMNGGNIITLQRILGHSTIQQT 303

Query: 296 QIYTNVNSKNGGDWM 310
            +Y +       D +
Sbjct: 304 MVYAHFAPDFLQDAV 318


>gi|227891778|ref|ZP_04009583.1| phage integrase [Lactobacillus salivarius ATCC 11741]
 gi|227866437|gb|EEJ73858.1| phage integrase [Lactobacillus salivarius ATCC 11741]
          Length = 381

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 111/277 (40%), Gaps = 30/277 (10%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           + +++    + F+SK        +     +S +K+ L Y  +  +   + +L +   KK 
Sbjct: 110 VDKITVRHCQDFVSKAFV--TTPKGYVYLISIVKNTLDYALRLGMIESNPMLYVIKPKKQ 167

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
                 +++K       + L       K+ +     I  LL   G+RI E L+LT  ++ 
Sbjct: 168 A----TISDKHDNFYNKDELKKFLEVAKYYNQEKYTIFRLLAYSGIRIGECLALTWHDLD 223

Query: 183 DDQSTLRIQGK---------------GDKIRIVPLLPSVRKAILEYYDLCPFDL------ 221
              +T+ I                      R++ L     + +  +       L      
Sbjct: 224 YKNNTITINKTLARTDKGITIQTPKTKASNRVISLDVETIQILKSWQLEQRKQLLKIGIN 283

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
           ++N    +F   +   +   V    I+Q+ +  G+    T+H  RH+ AT L ++G D++
Sbjct: 284 SMNKHQLIFNSNKNSFIFSSVITYDIKQIAKKAGIH-PITSHGFRHTHATLLFASGMDIK 342

Query: 282 SIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQT 317
            +Q+ LGH ++ TT  +YT+   K+  + + + + + 
Sbjct: 343 QVQARLGHSKVQTTLDVYTH-TMKDKQNKIGDEFARY 378


>gi|54298066|ref|YP_124435.1| hypothetical protein lpp2123 [Legionella pneumophila str. Paris]
 gi|53751851|emb|CAH13275.1| hypothetical protein lpp2123 [Legionella pneumophila str. Paris]
          Length = 353

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/272 (18%), Positives = 102/272 (37%), Gaps = 23/272 (8%)

Query: 53  YTEEKITIQTIRQLSYTEIRAFISKR------RTQKIGDRSLKRSLSGIKSFLKYLKKR- 105
           + +E++   ++ +LS   I     K       R  K    ++ R ++ +        K  
Sbjct: 93  WWKEELGQYSLAELSPAMIAEKRDKLSAGITSRNLKRSPSTVVRYMASLSHAFTIAVKEW 152

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
               +S +  +   K+     R L++ +   L+           K         + L   
Sbjct: 153 GWLEDSPMRRVTKPKEPRGRVRFLSDDERARLLSEC-------KKSDSQYLYLAVVLALS 205

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
            G R  E L L+ +N+  ++S + +   K  + R++PL       + ++  +   + +L 
Sbjct: 206 TGGRKMEILGLSWKNVDFNRSIITLHETKNGERRVLPLTGHALDLMKQHAKVRHVNSDL- 264

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
               +F G   K   P   +       +  G+      H LRHS A++L  NG  L  I 
Sbjct: 265 ----VFPGKDFK--TPIDLRTPFETALKRAGIT-DFRWHDLRHSCASYLAMNGASLAEIA 317

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            ILGH  L   + Y +++  +    +  + ++
Sbjct: 318 EILGHKTLQMVKRYAHLSEAHTSKVVARMNEK 349


>gi|332827396|gb|EGK00148.1| hypothetical protein HMPREF9455_03480 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 402

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 61/287 (21%), Positives = 104/287 (36%), Gaps = 25/287 (8%)

Query: 30  GLSKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
            L + TL  YE    + + F+      + I IQ I          FI  R      + + 
Sbjct: 128 RLDQKTLSRYELTLNRVIEFMRSELGTDDIHIQKIDLYFIERFYFFI--REKYSCINNTA 185

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            + +  + S + Y  K  +  ++  L + N +   + P  LNE +   +     L    E
Sbjct: 186 IKYVQRLASIVSYACKIGLIDKNPFL-LFNYRLDKTSPIYLNEDEINKIWRKKFLSKRLE 244

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKGDKIRIVPLLP 204
                 R+  +       GL   +  SL   +           + ++ K      +PLL 
Sbjct: 245 Q----IRDYFVFSCF--TGLSFIDMCSLKSDDIKVGPDKKLWIMILRQKTGLESNIPLLK 298

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
              + I +Y D      N      LF     +  N      Y++++     +  + T   
Sbjct: 299 IPLEIIKKYEDENTSGKN------LFSIKSNQKTNE-----YLKEIADLCNIKKNVTFRV 347

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            RHSFAT  +SNG  + ++  +LGH  + TTQIY  + S      M 
Sbjct: 348 SRHSFATLAISNGVSIEAVSKMLGHTNVKTTQIYAQITSTKISKEMA 394


>gi|307354180|ref|YP_003895231.1| integrase family protein [Methanoplanus petrolearius DSM 11571]
 gi|307157413|gb|ADN36793.1| integrase family protein [Methanoplanus petrolearius DSM 11571]
          Length = 379

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 63/312 (20%), Positives = 130/312 (41%), Gaps = 38/312 (12%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +K  ++++++LE+ + LS+ T+Q+         ++  +        +  +Q++  ++  +
Sbjct: 16  IKYLESYVKHLEL-KQLSEQTIQT--------KVWRNYNFLISNGFKDSKQVTQDDVENY 66

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP--RALNEK 132
             KRR +     ++   +  IK F ++L  ++ T E+   N++  +  +SLP  + L   
Sbjct: 67  FIKRRKE-CSQVTVNGEILEIKLFFRWLVGKE-TEEALFENVKIKRVRSSLPTDQLLTRY 124

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQ 191
               LV+               R+ AI+ LL+  G RI E +SL   +I  D+   + I 
Sbjct: 125 DIEKLVNACDRQ----------RDRAIIMLLWDTGARIGEIVSLNIGHIEFDRYGAVVIV 174

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR-----GIRGKPLNPGVFQRY 246
                +R + L+ SV         +    L      PLF      G   K LN    Q  
Sbjct: 175 KGKTGMRRLRLISSVPDLQA---WINVHPLRDRSDAPLFTTFTRYGNGNKRLNHHTIQNM 231

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI-----LGH-FRLSTTQIYTN 300
           ++++ +   +      H +RH+  T L+ N G  R +  +      G     +  ++Y +
Sbjct: 232 LKRVAQRANVHKRIHPHAIRHARLTDLVKNEGGKRGLSEMELRVFAGWEKNSNMPEVYVH 291

Query: 301 VNSKNGGDWMME 312
           ++  +    M+E
Sbjct: 292 LSGGDIERKMLE 303


>gi|300938277|ref|ZP_07153042.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 21-1]
 gi|300456732|gb|EFK20225.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 21-1]
          Length = 184

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/148 (29%), Positives = 62/148 (41%), Gaps = 1/148 (0%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAIL 211
            AR+  ++ L Y  G+RISE L L  Q++  ++  + I+  K     + PL    R+A+ 
Sbjct: 11  GARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVE 70

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
            +          +    +F   RG  L+     R IR      G    T  H LRH+   
Sbjct: 71  RWTQERANWKGADWTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGY 130

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            L   G D R IQ  LGH  +  T  YT
Sbjct: 131 ELAERGADTRLIQDYLGHRNIRHTVRYT 158


>gi|254303994|ref|ZP_04971352.1| bacteriophage integrase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148324186|gb|EDK89436.1| bacteriophage integrase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 370

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 62/295 (21%), Positives = 119/295 (40%), Gaps = 29/295 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  T   YE   R  L       +         Q++  +++A+ ++ + +K     +KR+
Sbjct: 89  SDNTFSVYETTYRLRLKDYNIANKRA------NQITLNDLQAYFNELQ-EKFTAGQIKRT 141

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
              I S +K+   + +        +   K+       +  KQ   L+    L T ++   
Sbjct: 142 YIHIHSCIKFAIFQGVMVRDYCGGIILPKEKKKEKYNVFSKQEQELI----LKTLNKKDV 197

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD------------KIRI 199
           +D     ++Y  +  GLR+ E L+L   +I D+  T+  Q                    
Sbjct: 198 VD----CLIYFTFYTGLRLGEVLALRWDDIKDNILTINRQYNKRVEVIDIGKNNLTYEFK 253

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
                + ++ I     +     +L  Q  L   I GKP +    QR +  L + L +   
Sbjct: 254 DLKTKNSKREIPLPIKILDLLKDLPKQFDLIFTINGKPFDRKRPQRRMISLCKTLKIEYR 313

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
            + H++RHS+AT L      ++++QS++GH  +STT  IYT+V      + + ++
Sbjct: 314 -SFHSIRHSYATRLFELDIPIKTVQSLMGHSDMSTTMDIYTHVMKDKKLEILDKL 367


>gi|53716946|ref|YP_105717.1| phage integrase family protein [Burkholderia mallei ATCC 23344]
 gi|121596450|ref|YP_989655.1| phage integrase family protein [Burkholderia mallei SAVP1]
 gi|124381592|ref|YP_001024200.1| phage integrase family protein [Burkholderia mallei NCTC 10229]
 gi|126446520|ref|YP_001078394.1| phage integrase family protein [Burkholderia mallei NCTC 10247]
 gi|167002300|ref|ZP_02268090.1| site-specific recombinase, phage integrase family [Burkholderia
           mallei PRL-20]
 gi|238562796|ref|ZP_00439829.2| site-specific recombinase, phage integrase family [Burkholderia
           mallei GB8 horse 4]
 gi|254174529|ref|ZP_04881191.1| phage integrase family protein [Burkholderia mallei ATCC 10399]
 gi|254356822|ref|ZP_04973097.1| site-specific recombinase, phage integrase family [Burkholderia
           mallei 2002721280]
 gi|52422916|gb|AAU46486.1| phage integrase family protein [Burkholderia mallei ATCC 23344]
 gi|121224248|gb|ABM47779.1| phage integrase family protein [Burkholderia mallei SAVP1]
 gi|124289612|gb|ABM98881.1| phage integrase family protein [Burkholderia mallei NCTC 10229]
 gi|126239374|gb|ABO02486.1| phage integrase family protein [Burkholderia mallei NCTC 10247]
 gi|148025849|gb|EDK83972.1| site-specific recombinase, phage integrase family [Burkholderia
           mallei 2002721280]
 gi|160695575|gb|EDP85545.1| phage integrase family protein [Burkholderia mallei ATCC 10399]
 gi|238521889|gb|EEP85337.1| site-specific recombinase, phage integrase family [Burkholderia
           mallei GB8 horse 4]
 gi|243062035|gb|EES44221.1| site-specific recombinase, phage integrase family [Burkholderia
           mallei PRL-20]
          Length = 565

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 69/314 (21%), Positives = 116/314 (36%), Gaps = 39/314 (12%)

Query: 16  KERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           KE +  +    +ERG  LS LT      D   +  FL   T  +  +   R     E R 
Sbjct: 243 KEAERLILWAIVERGRPLSSLT----TDDAIAYRGFLRRPTPRERWVGPSRPRHSVEWRP 298

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR----NLKKSNSLPRAL 129
           F     +  +  RS   +L+ + +  ++L +++    +    ++      +    + R  
Sbjct: 299 F-----SGPLSARSAAYALTVLSAMFRWLVEQRYVLANPFAGVKVRGAAARTGLDVARGF 353

Query: 130 NEKQAL--TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS- 186
            E + L    + + L  +         R   +L   Y  GLR SE +  T  +I  D+  
Sbjct: 354 TEGEWLLIRALADGLEWSYGWGAPAAHRLRFLLDFGYATGLRASEFVGATLGDIRRDEHG 413

Query: 187 --TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR----------GIR 234
              L + GKG K+  V L    R A+ +Y       +  +   P             GI 
Sbjct: 414 DHWLHVIGKGGKLGKVALPALARSALDQYLVQRGLPVTPSRWDPATPLVANLEEDGAGIE 473

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTT--------AHTLRHSFATHLLSNGGDLRSIQSI 286
              L   V +R+ R     +      T         H +RH+ ATH L+ G +L  ++  
Sbjct: 474 STRL-WRVLRRFFRFAADAIQDERPATAEKLRRASPHWMRHTHATHALARGAELIMVRDN 532

Query: 287 LGHFRLSTTQIYTN 300
           L H  +STT  Y +
Sbjct: 533 LRHASISTTSTYLH 546


>gi|229150814|ref|ZP_04279026.1| DNA integration/recombination/invertion protein [Bacillus cereus
           m1550]
 gi|228632603|gb|EEK89220.1| DNA integration/recombination/invertion protein [Bacillus cereus
           m1550]
          Length = 369

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/312 (18%), Positives = 112/312 (35%), Gaps = 43/312 (13%)

Query: 32  SKLTLQSYECDTRQ-------------FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           SK+TL+ Y     +             +  F+  +    I +  + +L+   I+      
Sbjct: 61  SKVTLKGYLNHWLEIKSMSIEKSTFAGYRAFINQHVIPSIGMVALHKLNVMHIQKCYKNA 120

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + I   S+      +KS L    K+ I + +        KK  +  +   E++    +
Sbjct: 121 IDKGISSNSILLMHRILKSALNLAVKQNIMSRNPADFAEIPKKEKTPIQTWTEEEVKKFL 180

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI- 197
            +     S E+++      AI       G+R+ E L L  Q+I  ++ T+ I        
Sbjct: 181 AH-----SQESRYHIGYLLAI-----TTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDN 230

Query: 198 ------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-----FRGIRGKPLNP 240
                       R +P+      A+ ++  L   +        L          G+ +  
Sbjct: 231 KIKKTAKTNSSKRTIPVPNETIAALKKHKILINKEKLRFGSAYLDQDLINCNEFGRIIKR 290

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYT 299
             F++   ++   +G+      H LRH+ AT LL  G + + I   LGH  +S T  +Y+
Sbjct: 291 AHFRKSFIRMTHKVGI-KEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYS 349

Query: 300 NVNSKNGGDWMM 311
           +V      + + 
Sbjct: 350 HVLPNMQEEAVK 361


>gi|134291483|ref|YP_001115252.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134134672|gb|ABO58997.1| phage integrase family protein [Burkholderia vietnamiensis G4]
          Length = 565

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/332 (18%), Positives = 119/332 (35%), Gaps = 54/332 (16%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-------------R 78
           S  T ++Y  +  + +++     E    + ++        R F+ +             R
Sbjct: 232 SAATQRAYRKEAERLILWA--IVERSCALSSLTTDDAIAYRGFLRRPTPRERWVGPSRPR 289

Query: 79  R-------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LN 130
                   T  +  RS   +L+ + +  ++L +++    +    +   K  + + RA L+
Sbjct: 290 HNVEWRPFTGPLSARSAASALNVLSALFRWLVEQRYVLANPFAGV---KIKSHVQRAGLD 346

Query: 131 EKQALTLVDNVLLHT-SHETKWIDARN-------SAILYLLYGCGLRISEALSLTPQNIM 182
             +  T  +  L+ T +   +W    +         +L   Y  GLR SE +  T  +I 
Sbjct: 347 VSRGFTEGEWQLIRTLADGLEWSYGWSVPAAQRLRFLLDFGYTTGLRASELVGATLGDIR 406

Query: 183 DDQS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGK 236
            D+     L + GKG K+  V L    R A+ +Y       +     N   PL   +   
Sbjct: 407 RDEHGDHWLHVLGKGGKLGKVALPSLARTALDQYLVQRGLPVTPARWNPATPLVASLDED 466

Query: 237 P--LNPGVFQRYIRQLRRYLGLP------------LSTTAHTLRHSFATHLLSNGGDLRS 282
              + P    R +R+                       + H +RH+ A+H L+ G +L  
Sbjct: 467 GTGIEPRRLWRVLRRFFVLAADAIQDERPATAEKLRRASPHWMRHTHASHALARGAELIM 526

Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           ++  L H  +STT  Y + +         + +
Sbjct: 527 VRDNLRHSSISTTSTYLHSDEVQRARQFDQAF 558


>gi|325301773|gb|ADZ05789.1| integrase [Acinetobacter baumannii]
          Length = 216

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 91/218 (41%), Gaps = 28/218 (12%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVNWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
             T+ ++ GKG K R + L  S+  ++ E         
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWW 199


>gi|319642758|ref|ZP_07997399.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|317385613|gb|EFV66551.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
          Length = 287

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 59/271 (21%), Positives = 109/271 (40%), Gaps = 23/271 (8%)

Query: 53  YTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111
                 T+ + RQL+   IR +       +++   +++  LS +K   +   K   + + 
Sbjct: 27  RNSRSQTLSSDRQLNEQFIRDYQDFCLERKRLAMETVRHYLSILKKICRIAYKEGHSEKY 86

Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
           +  + +  K+    P+ L+ +    L D  +     E +        +       G   +
Sbjct: 87  HFCHFKLPKQKEGTPKVLSRENFEKLRDLEI----PEKRRSHVITQDLFLFACYTGTAYA 142

Query: 172 EALSLTPQN-IMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           +A+S+T +N   DD+ +L +   + K D +  V LLP     I +Y          + + 
Sbjct: 143 DAVSITQENLFRDDEGSLWLKYRRKKTDYLGRVKLLPEALMLIKKY--------REDTRA 194

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSI 286
            LF      P +    +  ++ LR   GL      H  RHSFA+ + L  G  + +I  +
Sbjct: 195 TLFP-----PQDYHTLRANMKSLRLMAGLSQDLVYHMGRHSFASLVTLEEGVPIETISKM 249

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           LG+  + TTQIY  V  K   + M    + T
Sbjct: 250 LGYSNIKTTQIYARVTPKRLFEDMDRFVEAT 280


>gi|218263385|ref|ZP_03477505.1| hypothetical protein PRABACTJOHN_03191 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222765|gb|EEC95415.1| hypothetical protein PRABACTJOHN_03191 [Parabacteroides johnsonii
           DSM 18315]
          Length = 425

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 62/269 (23%), Positives = 112/269 (41%), Gaps = 25/269 (9%)

Query: 50  LAFYTEEKITIQTIR--QLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRK 106
           L  + ++K  ++ I    L+   IR + S    +    +++ +  L+ +K   +   K  
Sbjct: 160 LGEFVKKKYKVKDIAFGALNEQFIREYQSYIEVKCGYSNQTSRHHLALLKRICRIAYKEG 219

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
            +   + L+ +  K+  + P+AL+ +    L D   L    + + +       L+  Y  
Sbjct: 220 FSERYHFLHFKIPKQKETTPKALSREDFEKLRD---LDIPEKRRSLVLTRDLFLFACYA- 275

Query: 167 GLRISEALSLTPQN-IMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           G   ++ +S+T +N   DD+ +L +   + K +    V LLP     I +Y D       
Sbjct: 276 GTAYADTISITRENLYTDDEGSLWLKYRRKKNELKARVKLLPEAIALIEKYRD------- 328

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLR 281
            N +  LF             +  ++ LR   GL      H  RHSFA+ + L  G  + 
Sbjct: 329 -NSRETLFPNQLY-----STLRANMKILRVLAGLTTELVYHMGRHSFASLVTLEEGVPIE 382

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           +I  +LGH  + TTQIY  V  K   + M
Sbjct: 383 TISKMLGHNNIKTTQIYARVTPKKLFEDM 411


>gi|84468558|dbj|BAE71364.1| hypothetical protein [Vibrio cholerae O139]
 gi|84468563|dbj|BAE71368.1| hypothetical protein [Vibrio cholerae O139]
 gi|84468567|dbj|BAE71371.1| hypothetical protein [Vibrio cholerae O139]
          Length = 183

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 78/178 (43%), Gaps = 38/178 (21%)

Query: 171 SEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR---------------------- 207
            E + L  Q+I  D   +RI QGKG K R V L   +                       
Sbjct: 1   MECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKN 60

Query: 208 -------KAILEYYDLCPFDLNLNIQLPLFR--------GIRGKPLNPGVFQRYIRQLRR 252
                   A+ E Y   P++   +   P F+         +R   +N  V Q+ +R+  +
Sbjct: 61  YGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQ 120

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
             G+  + T HTLRHSFATHLL  G D+R++Q  LGH  + TTQIYT+V  +     +
Sbjct: 121 EAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDRGASGVL 178


>gi|265751749|ref|ZP_06087542.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263236541|gb|EEZ22011.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 411

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/290 (17%), Positives = 105/290 (36%), Gaps = 25/290 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K T   Y+   +    FL   Y  + I ++ +     ++   F+  R  +     ++  
Sbjct: 130 AKGTFNKYKIVYKHLQEFLTIRYHVKDIALKELTPAFISDFEMFL--RTDKHCCTNTVWL 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +  +++ +      +  T         +KK  +    L + +   L++  L +   E  
Sbjct: 188 YVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKDEIRLLMEGKLKNAKQE-- 244

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRIQGKGDKIRIVPLLPSVR 207
                   +       GL  ++  +LT +N     D+   + I  +   +     +  + 
Sbjct: 245 ----LYRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRQKTGVVSNIRMLDIA 300

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           K I++ Y     D        +F          G     IR + +  G+    T H  RH
Sbjct: 301 KRIIDKYRGLCGDGR------IFPVPHYNTCLAG-----IRTVAKRCGITKHITWHQSRH 349

Query: 268 SFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           + AT   LSNG  + ++ S+LGH  + TTQIY  +  +     M  +  +
Sbjct: 350 TAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMENLAAR 399


>gi|260590815|ref|ZP_05856273.1| integrase [Prevotella veroralis F0319]
 gi|260537301|gb|EEX19918.1| integrase [Prevotella veroralis F0319]
          Length = 391

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 97/285 (34%), Gaps = 26/285 (9%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           +SY      F+        + +    +  L+      +    + +     S K++L  + 
Sbjct: 128 RSYHRQLESFVE------SKGVADIPLTTLTMEFFDDYRIHFKRKGYALSSTKQNLFWLS 181

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
             +     ++    +   + +  +    + R L++     L+   L +   E        
Sbjct: 182 RLMYRAVSQQTIRYNPFEDAKYERVERKI-RCLSKTDIARLLAMPLQNEQAE------FV 234

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----QGKGDKIRIVPLLPSVRKAILE 212
             +       GL  ++   L   +I  + + +R     + K D   I PL P   + +  
Sbjct: 235 RKLFLFSVFTGLAFADVSKLRYCDIETNNAGIRYIRQYRKKTDVESITPLPPIAEQILSL 294

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           Y        +     P+F       ++      +++ +     +  S + H  RHSF   
Sbjct: 295 Y-----PLKDRKEDSPIFATS----MSRIQIGMHLKTIGLACAIRQSLSFHVGRHSFGAL 345

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            L  G  + SI  ++GH  +++TQIY  +        M  + ++ 
Sbjct: 346 TLEAGIPIESIAKMMGHASIASTQIYAQITDNKISKDMDRLIEKY 390


>gi|169631948|ref|YP_001705597.1| putative transposase/phage integrase [Mycobacterium abscessus ATCC
           19977]
 gi|169243915|emb|CAM64943.1| Putative transposase/phage integrase [Mycobacterium abscessus]
          Length = 402

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 65/365 (17%), Positives = 123/365 (33%), Gaps = 83/365 (22%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
            ++LP     E       ++  L  +   S  T+++Y           A++T  + T   
Sbjct: 22  ADHLPVAPVAE-------YIAFLRDD-QASPHTVRAYAAGL------AAWWTLLEHTGTG 67

Query: 63  IRQLSYTEIRAFISKRRT-------------QKIGDRSLKRSLSGIKSFLKYLKK----- 104
             Q+S +    F++  RT               +   ++++  + + +F +Y        
Sbjct: 68  WTQISTSLFGGFLTYLRTGDLPGTARVGPEGSGLAAATVQQRAAAVLAFYRYHAHAHNLD 127

Query: 105 ------------RKITTESNILN--MRNLKKSNSLPRA----------LNEKQALTLVDN 140
                       R  +    +L    R  ++   + R           L   Q   ++D 
Sbjct: 128 VPYQKLYGSLGKRGRSRYVPMLAGVGRRPRRDRPIYRVRGENARRTPILLPVQVQLILDA 187

Query: 141 VLLHTSHET---KWIDARNSAILYLLYGCGLRISEALSLTPQNI---------------M 182
             +  +           R+  +   L   G+R+ EALSL  Q+                 
Sbjct: 188 CAIQDTDGQWSGSQAGLRDRLLFATLAETGMRLGEALSLRHQDFCIGAGGTPWIDVAARQ 247

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR------GIRGK 236
           D    +R++G+  +I +   L ++  A +        D+ +      F       G    
Sbjct: 248 DHPHGVRVKGQPRRIYVGDDLEALYSAYVWQLVDAGADMTVPDLNNHFVFVNRAGGTLFA 307

Query: 237 PLNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           PL P      +R + R     LP   + H LRH+ A+ LL++G     +   LGH  + T
Sbjct: 308 PLRPETVYAKVRSVNRSAKDLLPAGWSPHWLRHTHASALLASGVPTHVVMRRLGHLDIQT 367

Query: 295 T-QIY 298
           T  IY
Sbjct: 368 TLSIY 372


>gi|330011068|ref|ZP_08306980.1| type 1 fimbriae regulatory protein FimB [Klebsiella sp. MS 92-3]
 gi|158267620|gb|ABW24951.1| FimB [Klebsiella pneumoniae]
 gi|257479867|gb|ACV60170.1| FimB [Klebsiella pneumoniae]
 gi|328534299|gb|EGF60912.1| type 1 fimbriae regulatory protein FimB [Klebsiella sp. MS 92-3]
          Length = 209

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 67/173 (38%), Gaps = 8/173 (4%)

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L + +  +L+       + +T    ARN  +  L +  GLR SE   L   +I      
Sbjct: 20  FLTQNEIESLL------KAADTGPYAARNYCLTLLCFIHGLRASEICRLRISDIDLAARC 73

Query: 188 LRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           + I   K       PLL     A+  +  +         +  LF   +G PL+   F + 
Sbjct: 74  VYIHRLKKGFSTTHPLLDKEIYALKRWLAIRSSWPQAASE-WLFLSRKGNPLSRQQFYQI 132

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           I       GLPL    H LRHS    L + G D R IQ  LGH  +  T  YT
Sbjct: 133 IASSGGLAGLPLEIHPHMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYT 185


>gi|89147498|gb|ABD62609.1| integrase [uncultured bacterium]
          Length = 163

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 50/110 (45%)

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G G       L      A  E+     F        P    +R   +     QR ++   
Sbjct: 53  GVGGVFMWPSLQRKYPNAGREWGWQYVFPAPKYSTDPRSGKVRRHHIYEKGLQRRVKLAA 112

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              G+    T HTLRHSFATHLL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 113 EEAGIVKRVTCHTLRHSFATHLLEGGYDIRTVQELLGHADVSTTMIYTHV 162


>gi|77459065|ref|YP_348571.1| Phage integrase [Pseudomonas fluorescens Pf0-1]
 gi|77383068|gb|ABA74581.1| putative phage integrase/recombinase [Pseudomonas fluorescens
           Pf0-1]
          Length = 296

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/275 (20%), Positives = 111/275 (40%), Gaps = 15/275 (5%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+LT++    D    L F     EE         L   ++ A ++  R       +    
Sbjct: 12  SQLTMRYVLQDAADRLGFEDMNVEE----IPWHALQPEDVVALVAALRADNYAPNTSSLY 67

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALTLVDNVLLHTSHET 149
           ++ I+  +    +  + ++ ++L MR++K      L +  N K   TL+  ++   + + 
Sbjct: 68  VNAIRGVMNEAWRMSLISQEHLLKMRSVKGIAGTRLSQGRNLK--RTLIHELMEVCAADP 125

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           +    R++A++ LLYG G+R SE++ L    +  ++ +L +  KG+K  I          
Sbjct: 126 RPQGLRDAAVIALLYGTGMRKSESVDLDLNQVDFNERSLCVTAKGNKQLIKYAPAWAFAK 185

Query: 210 ILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNP-GVFQRYIRQLRRYLG--LPLSTTAH 263
           +  + +    +L        F   R  RG  +    + +  I  + R  G  + +    H
Sbjct: 186 LNAWLEFRRSELKEGESDDAFLFNRIRRGSHITRERITKHAIYYIARQRGTQVGVKIMPH 245

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             R SF T ++    DL   Q +  H  + TT  Y
Sbjct: 246 DFRRSFITRVIEE-HDLSIAQKLAHHSNIQTTANY 279


>gi|291548984|emb|CBL25246.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 397

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/298 (19%), Positives = 105/298 (35%), Gaps = 34/298 (11%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           +Q    +    E+K+  ++I  +  ++ + +  + + +     ++      +K+      
Sbjct: 104 KQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMKDKGFSYNTINNHKRSLKASFYIAI 163

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           +     ++      + K S  L     EK ALT      L +  +T  +   +   + +L
Sbjct: 164 QDDCVRKNPF----DFKLSEVLENDTKEKVALTEEQEQALLSFIKTDNVYHNHYDDVLIL 219

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVR 207
              GLRISE   LT  +I      + I                      IR VPL     
Sbjct: 220 LKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGYYIETPKTKSGIRQVPLSRETI 279

Query: 208 KAILEYYDLCPFDLNL---NIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGL 256
           +A  +     P             LF   +GKP        L   + ++Y +  +     
Sbjct: 280 QAFQQVMKKRPKAEPFVIDGQSNFLFVNHKGKPKVAIDYNALFVRMVKKYNKHHKD--NP 337

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
               T HTLRH+F T L S   + + +Q I+GH  +S T   Y + +       +  +
Sbjct: 338 LPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQRL 395


>gi|53712967|ref|YP_098959.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60681179|ref|YP_211323.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
 gi|52215832|dbj|BAD48425.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60492613|emb|CAH07385.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
 gi|301162668|emb|CBW22215.1| putative bacteriophage integrase [Bacteroides fragilis 638R]
          Length = 406

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 102/278 (36%), Gaps = 33/278 (11%)

Query: 46  FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT---------QKIGDRSLKRSLSGIK 96
            +  L  Y +  I    +RQ+    I  F+   +T         + I   +         
Sbjct: 142 LIYHLQHYDKMGIR---LRQVDKKYILGFVEYLKTATQKHCKSVKNISANTQVHYYKVFH 198

Query: 97  SFLKYLKKRKITTESNILNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
             L      +I T + +  ++N    K+  +    L   +   L          +T + +
Sbjct: 199 HCLNSAVIDEIITSNPMDKIKNEEKPKRRRTERAFLTIDELKIL---------SQTDFHN 249

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI-LE 212
           A           CGLR S+ ++LT  N+         +GK  K+ +       ++ + L 
Sbjct: 250 ATLKKAFLFSCFCGLRHSDIVALTWGNLK--------KGKVGKMELHMTQQKTQEILSLP 301

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                   L +  ++P    +    ++ G     + +     G+    T H+ RH+ AT 
Sbjct: 302 LSKEALKQLPVRGKVPDTEKVFKGLISLGRTNEILPKWAAKAGIQKHITFHSARHTHATM 361

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           +++ G DL ++  +LGH  + TTQIY  +  ++    +
Sbjct: 362 MITLGADLYTVSKLLGHTNIQTTQIYAKIVDESKEKAI 399


>gi|317506912|ref|ZP_07964684.1| phage integrase [Segniliparus rugosus ATCC BAA-974]
 gi|316254840|gb|EFV14138.1| phage integrase [Segniliparus rugosus ATCC BAA-974]
          Length = 395

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/317 (14%), Positives = 101/317 (31%), Gaps = 58/317 (18%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEE--KITIQTIRQLSYTEIRAFISKRRTQK-------- 82
             T++ YE         L+ +  E  K    T+ +L  + I A I   +           
Sbjct: 89  ANTIELYER--------LSIHHIETGKFGTLTLDKLKPSHIEALIVHLKNAGKAQTGDDG 140

Query: 83  ------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                 + + +++ + + ++S L    +  +  E+    ++  K                
Sbjct: 141 KKNLVGLAESTVRTTYTVLRSALDTAVRDGLLAENPATKVKRPKVERKEAVHFEAADLAK 200

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---------- 186
           ++        H T          L L+   G+R  EA  L   ++   +           
Sbjct: 201 ILKAADSSRYHTT----------LLLIAASGIRRGEAAGLRWSDVELKEQDGKFTVRKTA 250

Query: 187 -------TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-----NLNIQLPLFRGIR 234
                   L         R +PL   +  A+  +      +             +F    
Sbjct: 251 ARIGGELVLTDPKTKTSRRTIPLSQGMVTALKAHRKRQLEERLRAGDQWKDNGMVFTTEF 310

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G  ++P    R ++   +  G+      H +RHS A   L +G  ++++  +LGH  ++ 
Sbjct: 311 GTIVDPRNLLRVVKAAAKKAGIEK-ANVHAVRHSAAMAWLESGVHIKAVADLLGHSSIAI 369

Query: 295 T-QIYTNVNSKNGGDWM 310
           T  IY + + +     +
Sbjct: 370 TGDIYGHTSDQAARSAV 386


>gi|302134313|ref|ZP_07260303.1| putative bacteriophage integrase [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 363

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 92/259 (35%), Gaps = 16/259 (6%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           E    + +  L+  +IR + S R        ++ R L+ + + + +          N + 
Sbjct: 88  EHFGGRVMNDLAGKDIRKYSSLRMKAGKSAATVNRELAALSAAINWCAVELEWKLPNPVK 147

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
            R L+++ S  R L   +  +L            +       A + L    G R +E + 
Sbjct: 148 GRTLREAESRVRWLTRAEVESLCRE------ARRQRGGDMLEAFIRLAVNTGCRKNELVG 201

Query: 176 LTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
           L  + +      + ++G   K  K R +PL      A+    +        +  + + + 
Sbjct: 202 LEWRRVDIANRLIYLEGANTKAGKRRSIPLNEGAMAALKGRMEFRAEHNPASPWVFIRKN 261

Query: 233 -IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
             +   L+ G             G+      H LRH+ A  L + G  L  I+ +LGH  
Sbjct: 262 GDKVLDLSEG-----FNGACDRAGI-KDFVIHDLRHTCAAWLATAGVPLIEIRDLLGHST 315

Query: 292 LSTTQIYTNVNSKNGGDWM 310
              T+ Y +++     D +
Sbjct: 316 TQMTEKYAHLSPARVRDAV 334


>gi|291541000|emb|CBL14111.1| Site-specific recombinase XerD [Roseburia intestinalis XB6B4]
          Length = 411

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/289 (16%), Positives = 110/289 (38%), Gaps = 33/289 (11%)

Query: 55  EEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI 113
           ++    + I ++  ++ +A++ K  R    G  S+      ++   +  ++  +  ++  
Sbjct: 127 KDDFGKKRIDKVKLSDAKAWLIKLQRVDGKGYSSIHTIRGVLRPAFQMAEEDDLIRKNPF 186

Query: 114 -LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
              + N+  ++S+ R    +      +   L    E         AI  +L+  GLRISE
Sbjct: 187 GFELVNVIVNDSVRR----EAVTRKQEREFLRFIKEDAHFCKYYDAIF-ILFNTGLRISE 241

Query: 173 ALSLTPQNIMDDQSTLRIQG----------------KGDKIRIVPLLPSV----RKAILE 212
              LT  ++      +R+                       R VP+   V    ++ + +
Sbjct: 242 FCGLTKSDLDFKNKRIRVNHQLQRTSQMQYIIEKPKTESGERYVPMSDEVMACFKRILKD 301

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG-LPL----STTAHTLRH 267
             +     +   +   LF      P+    +++Y + +R     +        T H  RH
Sbjct: 302 RVNPKVEPMVDGMTGFLFLDKNDMPMVALHWEKYFQHIREKYNSIYKVQMPPITPHVCRH 361

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYD 315
           +F +++  +G + + +Q I+GH  +S T   YT+V  ++  +   +  +
Sbjct: 362 TFCSNMAKSGMNPKMLQYIMGHSDISVTMNTYTHVKFQDAQEDFQKAIN 410


>gi|78777830|ref|YP_394145.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
 gi|78498370|gb|ABB44910.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
          Length = 368

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/279 (18%), Positives = 112/279 (40%), Gaps = 20/279 (7%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           ++Y  D + + + +A     K     I+ +   +I  F     ++    +S+K  +  ++
Sbjct: 100 KTYISDEQYYRLHIAPTFANK----DIKSIKSKDIEQFKQLYTSKGYAAQSVKHYIGLMR 155

Query: 97  SFLKYLKKRKITT--ESNIL--NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             + Y  K  +     + I    ++     N+    L+++QA  ++D +L       ++ 
Sbjct: 156 HIINYAIKNDLIKNYANPISGGKVKLPTIDNARQAFLSKEQARVILDELL-------QYE 208

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           + +   +  LL   G R SE  SLT  NI  + + +  +   +       +  + K ++E
Sbjct: 209 NPQLYQLTILLLYTGARFSEVASLTWNNINFETNMIYFKATKNGNARWVFMNELVKEVIE 268

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPL--NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
                  D N N+ +   +G + + +  +  +    I    +        T H+LRH+ A
Sbjct: 269 QLKA---DKNNNLIIANTKGKQMERMLHSWQIVVDNIIDENKEADAKQRVTVHSLRHTHA 325

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           + L   G D+  I+  LGH  L  T  Y+++      + 
Sbjct: 326 SWLAMAGLDILHIKEQLGHKTLEMTMRYSHLIPNKRHEA 364


>gi|10956906|ref|NP_049126.1| transposon protein A [Novosphingobium aromaticivorans]
 gi|3378339|gb|AAD03922.1| transposon protein A [Novosphingobium aromaticivorans]
          Length = 404

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 59/378 (15%), Positives = 126/378 (33%), Gaps = 86/378 (22%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ++++  ++W+ +LE +   S  T+++Y      F  FL            I + +     
Sbjct: 32  DVVECLRHWIVHLE-QTHASPNTIRAYVRHVVDFASFLGANG------AGIHEATVALYD 84

Query: 73  AFISKRRTQK-------------------IGDRSLKRSLSGIKSFLKYL----------- 102
           +F++ R  ++                   +   +  +    +KSF ++            
Sbjct: 85  SFLAWRLARRKDALPSPRLILLRKQETRILAPSTRNQIQLAVKSFYRFYNGTDDFAVDTT 144

Query: 103 ----KKRKITTESNILNMRNLKKSNS-----------------LPRALNEKQALTLVDNV 141
                          L   + +++                   L + L   + L L++  
Sbjct: 145 EVTKAYDGHRIYKPFLEHISQRRTTRRKDRYLSGDPGRVQQQVLKKRLTPSEVLRLIEAC 204

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----------Q 191
            L           R++ ++ LLY  GLRI EAL L   +I   +  + +          +
Sbjct: 205 GLA----------RDAFLVVLLYNTGLRIGEALGLRHVDIDLAEKVIWVVPREDNANEAR 254

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIR----GKPLNPGVFQRY 246
            K  + R VP+   V    ++Y           +    +F  ++    G  ++    Q+ 
Sbjct: 255 AKSGRTRGVPVHDYVLNMYVDYITSDEYLPAFESGAEYVFTNVKAGVIGHAMSLSYAQKL 314

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKN 305
              L +   +    + H  RHS A+  ++ G  L  +   LGH    TT   Y ++ +  
Sbjct: 315 AGLLEQRTHIAF--SWHMFRHSHASEAIAAGYSLLEVADRLGHASPQTTAAFYQHLFASE 372

Query: 306 GGDWMMEIYDQTHPSITQ 323
                +   D+ H  + +
Sbjct: 373 IRRLYLTGPDEVHERLEK 390


>gi|44004490|ref|NP_982158.1| site-specific tyrosine recombinase XerS [Bacillus cereus ATCC
           10987]
 gi|42741556|gb|AAS45001.1| integrase/recombinase, phage integrase family protein [Bacillus
           cereus ATCC 10987]
          Length = 361

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 65/335 (19%), Positives = 133/335 (39%), Gaps = 43/335 (12%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-----------EKITIQTIRQLSYTEI 71
           + +E++  LS  TL  Y  +  +F  ++                 +I I+ +  L   E+
Sbjct: 26  EYIEMKAMLSPATLYGYITEFEKFFKWMIEKRIAVINGNVATEIHEIPIELLESLPLNEV 85

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALN 130
             F    +++ I  +++ R+ S +KS  KYL ++      N    RN+     L +  ++
Sbjct: 86  NRFHMYLKSEGIEIKAINRTFSALKSLFKYLSQKTEDEYGNSYLSRNVMDKIELHKEKID 145

Query: 131 EKQALTLVDNVLLHTSHETKWI-------------------------DARNSAILYLLYG 165
                  V N++ + + +  ++                           R+ A++ L+ G
Sbjct: 146 AAARADDVANMIFNNNDDAAFLRFLANDYEFILKETSTRKYNYFLRDKERDIALISLILG 205

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
            GLR+SE  SL+  ++   Q T+++  KG+K   +    S    + EY  +         
Sbjct: 206 TGLRVSELASLSLSSVNFRQKTIKVIRKGNKKSSILATQSSLDDVQEYLKVRQERYGCPP 265

Query: 226 QLPL-FRGI---RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
           +  + F      +   L+    Q  + +           + H LRH++AT+      DL 
Sbjct: 266 EEEIMFVTRYQGKYTQLSVRAIQNLVDKYTSA--FDEKRSPHKLRHTYATNHYKENKDLV 323

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            ++  LGH  +  T IYTN+N++   + +  +  +
Sbjct: 324 LLRDQLGHTSVEVTSIYTNINNEKKREAIDRLEKR 358


>gi|15925018|ref|NP_372552.1| integrase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927603|ref|NP_375136.1| hypothetical protein SA1835 [Staphylococcus aureus subsp. aureus
           N315]
 gi|156980344|ref|YP_001442603.1| hypothetical protein SAHV_2013 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|255006817|ref|ZP_05145418.2| hypothetical protein SauraM_10125 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|13701822|dbj|BAB43115.1| int [Staphylococcus aureus subsp. aureus N315]
 gi|14247801|dbj|BAB58190.1| similar to integrase [Staphylococcus aureus subsp. aureus Mu50]
 gi|156722479|dbj|BAF78896.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
          Length = 390

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/293 (16%), Positives = 99/293 (33%), Gaps = 39/293 (13%)

Query: 52  FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111
            +  E+   + I+ +   + + F++    Q      +   ++      KY    K+    
Sbjct: 92  HHAIERFKNKPIQTIKKHDYQRFVNDISIQ-YSKNYVDSIVTSTNMIFKYAYDMKLIRIL 150

Query: 112 NILNMRNLKKSNSL---------PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
               ++  KK  S+          + L + +    ++    H S +  +       + Y 
Sbjct: 151 PSEGIKRPKKKVSVEELEDTEIHKKFLEKDELFQFLEIAKNHHSPQNSFE------VFYT 204

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP------------------LLP 204
           L   G+R  E L+L   +I  + +T+ I                             + P
Sbjct: 205 LAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNNNKKQYQILTPKTESSIGKISVDP 264

Query: 205 SVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LST 260
            V K +  Y           + +    +F  + G PL     Q +I+ + +   +     
Sbjct: 265 HVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYPLVIKKLQLWIKAILKKTNITNKQI 324

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMME 312
           + H+ RH+    L+  G  ++ IQ  L H  ++TT  IY  + +    D   +
Sbjct: 325 STHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKITNSYKKDASQK 377


>gi|23009771|ref|ZP_00050696.1| COG4974: Site-specific recombinase XerD [Magnetospirillum
           magnetotacticum MS-1]
          Length = 174

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 66/180 (36%), Gaps = 12/180 (6%)

Query: 1   MEGNNLPEIVSFELLKE-RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
           M   N PE       ++  Q +L  L  ERG +  TL  Y  +   +  +LA        
Sbjct: 1   MSAGNPPEPPGTGRPEDPAQPFLDMLAAERGAAANTLADYRRELDDYCGYLAQEG----- 55

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
                +     +RA+I     + +   S  R LS I+ F ++L    ++       + + 
Sbjct: 56  -LAPEEAEAEHVRAYIDSLEPRGLKASSAARRLSCIRGFHRFLYAEGLSDNDPTEPVADP 114

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-----RNSAILYLLYGCGLRISEAL 174
           +++  L + L+  +   L  +         +  +       ++    +    GLR+SE +
Sbjct: 115 RRAKGLTKILSVAEVDPLARHRPRTGRGVPRESNGGTGRRADAVPARIALAKGLRVSEII 174


>gi|332885867|gb|EGK06113.1| hypothetical protein HMPREF9456_02377 [Dysgonomonas mossii DSM
           22836]
          Length = 406

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 58/314 (18%), Positives = 121/314 (38%), Gaps = 28/314 (8%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYEC---DTRQFLIFLAFYTEEKITIQTIRQL 66
           VS  LL+  +   + L  +R L   +  +Y            F+     + I    I + 
Sbjct: 100 VSTSLLQAGEAERERLR-KRSLEINSTSTYRQSKTTQSNLRDFVLSRGMDDIAFSDITEE 158

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
                ++F+  ++        +   L  +   +     +++   S I ++   KK+    
Sbjct: 159 FGESFKSFL--KKDLGYATTHVNHCLCWLNRLVYIAVDQEVLRSSPIEDVEYEKKNPPKL 216

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQ 185
           R +   +   +++     T    +  +    A ++  +  GL   +  +L PQNI    +
Sbjct: 217 RHITRNELKKIME-----TPMPYERQELARRAFIFSAF-TGLAFVDVHNLYPQNIGKTAE 270

Query: 186 STLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
             L I+    K      +PL P   + ++ Y  +       +   P+F        +   
Sbjct: 271 GKLYIRSSRAKTKVEAFIPLHPIAEQILMLYNTI-------DNTAPIFPLP-----SRDQ 318

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               + ++   LG+  + + H  RHSF T +LS G  + SI  ++GH  +S+TQIY+ V 
Sbjct: 319 IWFEVHEIGFALGIKENLSYHMSRHSFGTLMLSAGIPIESISKMMGHTNISSTQIYSKVT 378

Query: 303 SKNGGDWMMEIYDQ 316
                + M ++ ++
Sbjct: 379 DDKISEDMDKLMER 392


>gi|260495435|ref|ZP_05815561.1| site-specific recombinase [Fusobacterium sp. 3_1_33]
 gi|260196972|gb|EEW94493.1| site-specific recombinase [Fusobacterium sp. 3_1_33]
          Length = 396

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 69/318 (21%), Positives = 125/318 (39%), Gaps = 42/318 (13%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           ++ +++  +L  LE     SK T+Q  +Y+    Q  I   F++++ +    +  ++   
Sbjct: 74  KIEEQKIKFLDFLEQSITNSKNTIQYPTYKSYKDQQRIIEKFFSQKNL---DLEAVTVAN 130

Query: 71  IRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           I  F +     +K  + ++    + ++        RK+  E+ +L +   KK   +    
Sbjct: 131 ILDFYNHLSIVRKNTNNTIIHYHALLRKTFTEAHIRKLIKENIMLEIPRPKKEKYISEVF 190

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           N K+  T ++ +  H               L L    G R SE L L    I  D +T+ 
Sbjct: 191 NLKEINTFLNYIKGHKFELE----------LNLALFYGFRRSELLGLRFSVIDFDNNTIL 240

Query: 190 IQGKG-----------------DKIRIVPLLPSVRKAILEYYDLCPFDLN-------LNI 225
           +  K                     RI+PLL S+++ I++  +    D N          
Sbjct: 241 VNTKITSSEEEKLVAKQKMKNDSSYRIMPLLASIKELIIQRVERIKKDKNFFKSSYTKKW 300

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
           +  +     G+ + P    +  R+L +  GL      H LRHS AT L      L+ IQ 
Sbjct: 301 EGFICVDEDGELIKPDRVTKTFRRLIKECGL-KKIRLHDLRHSCATLLYEQDIQLKDIQM 359

Query: 286 ILGHFRLSTTQ-IYTNVN 302
            LGH  + TT  IY++ +
Sbjct: 360 WLGHSDIQTTANIYSHFD 377


>gi|119488694|ref|ZP_01621703.1| tyrosine recombinase XerC [Lyngbya sp. PCC 8106]
 gi|119455117|gb|EAW36258.1| tyrosine recombinase XerC [Lyngbya sp. PCC 8106]
          Length = 301

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 104/289 (35%), Gaps = 14/289 (4%)

Query: 27  IER-GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           +ER GL+K T +SYE      L F           + +  +S   I  ++     + +  
Sbjct: 12  LERPGLAKSTRRSYETALIPLLTFHGR--------KPVEIISRQVICDYLQSL--EHLSI 61

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            +  R  + I+S   Y         + I  +   +K           + +  ++++ L  
Sbjct: 62  NTHHRHQAIIQSLFNYGVAFGYLKSNPIAGLAR-RKPLLEKGEHGTDEVIRYLNHLQLVE 120

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
            ++    D R  AI+ LL+  G RI E L+L  + +       ++ GKG+K R       
Sbjct: 121 LYKVVSQDVRLHAIVRLLHRTGARIGEVLALDLEQVDTIVRKFQVVGKGNKQRWCFYSED 180

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFR-GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             + + +Y        +  +             L+          L     +      H 
Sbjct: 181 AAQVLDKYIKYYRDTGSTALFTARNPFTQEVTRLSDRRVDSNWCDLTAQSFVLKGARLHD 240

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           LRH+FAT  +     +  +++++GH ++ TT  Y  V S        + 
Sbjct: 241 LRHTFATERVGL-MSIEELRALMGHEKIQTTLRYQKVTSLRAEVVAQKA 288


>gi|325696212|gb|EGD38103.1| phage integrase family prophage Sa05 [Streptococcus sanguinis
           SK160]
          Length = 386

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 108/278 (38%), Gaps = 33/278 (11%)

Query: 63  IRQLSYTEIRAFISKRRTQKIG---DRSLKRSLSGIKSFLKYLKKRKITTESNILNM--- 116
           + +L+ + I+ F++   +  +      S+   +      LKY    ++   +   ++   
Sbjct: 115 LDKLAASYIQGFVNDLSSHLVHFGVVHSINSRI------LKYGVSLQLIPFNPARDIILP 168

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           R  K+ N   + ++ +   TL+D +        K+    +  +  +L   G R  EA++L
Sbjct: 169 RKPKRENKSIKFISPEDLKTLLDYMEKLAF--KKYSYFFDYMLYSVLLATGCRFGEAVAL 226

Query: 177 TPQNIMDDQSTLRIQGKGDK-------------IRIVPLLPSVRKAILEY---YDLCPFD 220
              +I  + +T+ I    ++             +R++ +       +  Y         +
Sbjct: 227 EWSDIDLENATISISKNYNRLVDLVGPPKSKAGVRVISIDRKTVNMLKLYKNRQRQLFIE 286

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
                   +F     K  N    Q  + +  +  G+P   T H  RH+ A+ LL+ G   
Sbjct: 287 DGARAPSVVFATPTKKYQNMATRQDSLDRRCKEAGIPR-FTFHAFRHTHASLLLNAGISY 345

Query: 281 RSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQT 317
           + +Q  LGH  L+ T  IY++++     + +   Y++ 
Sbjct: 346 KELQYRLGHATLAMTMDIYSHLSKDKEKEAV-SYYEKA 382


>gi|319649469|ref|ZP_08003625.1| hypothetical protein HMPREF1013_00229 [Bacillus sp. 2_A_57_CT2]
 gi|317398631|gb|EFV79313.1| hypothetical protein HMPREF1013_00229 [Bacillus sp. 2_A_57_CT2]
          Length = 373

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/292 (15%), Positives = 102/292 (34%), Gaps = 26/292 (8%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
           E        ++  +    +    + QL+  E + FI+    +    ++++   S   + +
Sbjct: 85  ERTLFNRFWYINNHIIPSLGNYKMNQLTRIEYQKFINTLVEKGYARKTIQTIHSIFCTAI 144

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
               + ++ T +    +    +       L+  +    +D          K     +  I
Sbjct: 145 NKAVELEMVTHNKYQGISIKVEEEEKINYLSRDEVEIFMDA--------AKKSPYHHYII 196

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK-----------GDKIRIVPLLPSVRK 208
             +L   G+R  E L+L  ++I  +  T+ I                  R + +  ++  
Sbjct: 197 ASILLRTGMRKGEMLALKWEDIDFENKTISITKTRSDNGVKKPKTKSSNRTIGIDNTLIA 256

Query: 209 AILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTA 262
            + +Y             + +    L R   GK +      + I  + +         + 
Sbjct: 257 DLKQYQLWQKKNKMKHGADYHKSEFLVRCPNGKEIGEYGVNKTIDSILKKANTNLPHISP 316

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           H LRH+ A  LL +G DL+ +   LGH  ++ T  +Y ++  K     ++++
Sbjct: 317 HGLRHTHAIMLLESGADLKFVSERLGHSTINMTADVYVHITKKYETVNLLKL 368


>gi|300769888|ref|ZP_07079768.1| integrase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300763339|gb|EFK60155.1| integrase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 414

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 58/293 (19%), Positives = 114/293 (38%), Gaps = 24/293 (8%)

Query: 31  LSKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            +  TL+ Y+   +  + FL   +T + I I+ I      +   ++  R T+K  + +  
Sbjct: 128 YAPGTLERYKTSLKHTVDFLQTRHTIQDIDIRKIDHAFIMDYEFYL--RNTRKCNNNTAV 185

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           + +   +  +              +N ++ K        L +++      +++   +  T
Sbjct: 186 KYIKNFRKIINICIANGWLDRDPFVNYKS-KIREVERSYLTQEEV-----HIIYSRTFAT 239

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNI----MDDQSTLRIQGKGDKIRIVPLLPS 205
             ++     I       GL   +  +LTP +I       +     + K +    +PLLP 
Sbjct: 240 DRLNIV-RDIFVFSCFTGLAYIDVRNLTPFHINIGIDGGKWIFTHRQKTETPSRIPLLPI 298

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
             + I +Y D      N    LP+        L+      Y++++    G+    T H  
Sbjct: 299 ALEIIRKYEDHPQCS-NEGTLLPI--------LSNQKMNAYLKEIADICGIRKELTFHIA 349

Query: 266 RHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           RH+FAT + LSNG  + S+  +LGH  L TTQ Y  +  +     M  + ++ 
Sbjct: 350 RHTFATTITLSNGVPIESVSKMLGHKNLRTTQHYAKILDQKISHDMQMLKEKF 402


>gi|239981603|ref|ZP_04704127.1| integrase [Streptomyces albus J1074]
          Length = 382

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 62/320 (19%), Positives = 111/320 (34%), Gaps = 41/320 (12%)

Query: 11  SFELLKERQNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           S +L +    WL N ++  R LS  T   YE   R +L+ L       +  + +  L   
Sbjct: 70  SAKLSEWLPYWLDNVIKPRRKLS--TYDKYEAHARLYLVPL-------LGAKRLESLGVA 120

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++R FI +   +     + K S   ++S L    + ++ T +    +   +  N   +  
Sbjct: 121 DVRRFIVRLEKETTAA-TAKESHRVLRSALSSACREELITRNVAKLVEPPRTVNRELKPW 179

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              + L  +       +     +     A   L    GLR  E + L   ++  D   L 
Sbjct: 180 TLDETLDFL------AASRKDPL----YAAFVLAIAMGLRRGEIIGLRWSDLDLDNRVLY 229

Query: 190 IQG--------------KGDKIRIVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFR 231
           ++               K  + R VPL       +  +                   +F 
Sbjct: 230 VRQQTQRRRGVLYDDDPKSRRRRAVPLPALCIAPLRWHRMRQAAARVKAGEWQESGYVFT 289

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
              G+ + P    R   ++    GL +    H  RH  AT L + G   R +  ILGH +
Sbjct: 290 TRTGRQVEPRNVYRSFTRVAESAGLRV-IRLHDARHGTATLLTAAGVAPRVVMEILGHSQ 348

Query: 292 LSTTQ-IYTNVNSKNGGDWM 310
           +S T  +YT+V      + +
Sbjct: 349 ISITMDVYTHVVQDTQREAI 368


>gi|160945698|ref|ZP_02092924.1| hypothetical protein FAEPRAM212_03229 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443429|gb|EDP20434.1| hypothetical protein FAEPRAM212_03229 [Faecalibacterium prausnitzii
           M21/2]
          Length = 498

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 55/309 (17%), Positives = 104/309 (33%), Gaps = 42/309 (13%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T  SYE         + ++     T+Q + Q     I+ F      + +   ++    + 
Sbjct: 196 TYTSYERAIVH--KIVPYFEPLHYTLQDMEQ-HPKYIQDFYQHELDRGLTANTVIHYHAN 252

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           I+  L+Y  +  +   +    +   +K        + ++   L   +    S        
Sbjct: 253 IRKCLQYAFQIGMIRSNPADRVERPRKEKFKSEIYSGEELEQLFKVIQGDPSEFG----- 307

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK--------------------G 194
               I+   Y  GLR SE + L    +  +   + IQ                       
Sbjct: 308 ---VIMAAFY--GLRRSEIVGLKWDAVDFENKKISIQHTVVTAKVNGTVTEIARDKTKTK 362

Query: 195 DKIRIVPLLPSVRKAILEY-------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
              R +PL+P+  + + +          +C      +    ++    GK + P    ++ 
Sbjct: 363 SSCRTLPLIPACEQMLNKMKKEQEQNRKVCGRSYCTDYLDYIYVDPMGKRIRPDFLSQHF 422

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNG 306
                          H LRHS A+ L +NG  L+ IQ  LGH  +STT  IYT+++  + 
Sbjct: 423 PDFLV-AHQMKRIRFHDLRHSCASLLYANGVSLKEIQEWLGHSDISTTSNIYTHLDFSSK 481

Query: 307 GDWMMEIYD 315
                 I +
Sbjct: 482 VSSANAIVN 490


>gi|312109706|ref|YP_003988022.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|311214807|gb|ADP73411.1| integrase family protein [Geobacillus sp. Y4.1MC1]
          Length = 399

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 62/315 (19%), Positives = 110/315 (34%), Gaps = 46/315 (14%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI-----SKRRTQKI 83
           + LS+ TL +Y       L  +  +    +    I Q+    I  F+     +  + + +
Sbjct: 89  KELSETTLNNY-------LSHIKNHILPALGHMRIDQIKPVHIVNFLDQIKRADGKKKPL 141

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR---ALNEKQALTLVDN 140
             R+++ +   I++ L+   + +I   +    ++  K      +     +EK+   L   
Sbjct: 142 ATRTIENAYLTIRNILQRAVEWQIIKSNPASAVKKPKSKKEAVKEVQVYDEKEVEALFRA 201

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-------- 192
           V     H              L    GLR  E L+L   NI  ++  +RI          
Sbjct: 202 VQNEPFHW--------RIFTTLAIAAGLRRGELLALEWSNIDLEKGVIRINKAIVKGRKR 253

Query: 193 -------KGDKIRIVPLLPSVRKAILEYYDLCPF------DLNLNIQLPLFRGIRGKPLN 239
                       R+V L  SV   +  Y            DL    +  LF  I G+   
Sbjct: 254 SVEKSPKTKKSNRLVSLPKSVVAELKLYRRHWLKQKLQAGDLWKEEKEYLFCNIDGRHFY 313

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IY 298
           P     + R+  +  G+      H LRH+ AT L++ G   + I   LGH  +  T  IY
Sbjct: 314 PTTPTTWWRRFTKRAGI-RYIRLHDLRHTSATLLINQGVHAKIIAERLGHSDIRVTMDIY 372

Query: 299 TNVNSKNGGDWMMEI 313
            +   K   +   ++
Sbjct: 373 GHALQKADHEAANKL 387


>gi|220927526|ref|YP_002504435.1| integrase family protein [Clostridium cellulolyticum H10]
 gi|219997854|gb|ACL74455.1| integrase family protein [Clostridium cellulolyticum H10]
          Length = 385

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 120/359 (33%), Gaps = 61/359 (16%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++ E   +  N     G +  T++ Y  D + FL +L     + I +  +R +  ++   
Sbjct: 23  VIHEEALFFSNFLYSEGYAINTIEGYLRDLKIFLEYLES---KDILLGEVRPIHVSQFMD 79

Query: 74  FISKRR---------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           ++             +++    ++KR LS + +F K L      + S    +  +K  + 
Sbjct: 80  YLRGHELEEIINLSESERRKATTVKRILSSLSTFYKSLDAADAKSNSPFTYLDGIKPQDM 139

Query: 125 LPRALN-------------------EKQALTLVDNVLLHTSHE----------TKWIDAR 155
               L+                   + +   +V      T                   R
Sbjct: 140 YKTFLSYTRGSKIKKRNVGIRQKRTDGETSQVVRKYSNRTGKRLFTDEVDIFYKGLTGTR 199

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQ-----STLRI----------QGKGDKIRIV 200
           N  I  +LY  G+RI E LSL   +  +         + I          + +    R +
Sbjct: 200 NKLIFDILYETGMRIGELLSLKVNDYSEVDPWNLFGYIYIIYDEENDDQNRQQKTGSRTL 259

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG--IRGKPLNPGVFQRYIRQLRRYLGLPL 258
                +   I EY       +     + +      +G+PL+  + ++   +     G+  
Sbjct: 260 VTTMKLLGRIEEYITEIRPYIKEQEYIFVAESGKTKGQPLSRSLIEKVFSECTEKTGI-- 317

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
             T H LRH+  T L   G D   ++   GH  + TT+ YT+ + +         Y + 
Sbjct: 318 KCTPHMLRHTHLTELSEFGFDEIFLKGRAGHRSIHTTEKYTHPSLEAQVRAYER-YMKA 375


>gi|253563055|ref|ZP_04840512.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|251946831|gb|EES87113.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
          Length = 393

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 102/278 (36%), Gaps = 33/278 (11%)

Query: 46  FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT---------QKIGDRSLKRSLSGIK 96
            +  L  Y +  I    +RQ+    I  F+   +T         + I   +         
Sbjct: 129 LIYHLQHYDKMGIR---LRQVDKKYILGFVEYLKTATQKHCKSVKNISANTQVHYYKVFH 185

Query: 97  SFLKYLKKRKITTESNILNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
             L      +I T + +  ++N    K+  +    L   +   L          +T + +
Sbjct: 186 HCLNSAVIDEIITSNPMDKIKNEEKPKRRRTERAFLTIDELKIL---------SQTDFHN 236

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI-LE 212
           A           CGLR S+ ++LT  N+         +GK  K+ +       ++ + L 
Sbjct: 237 ATLKKAFLFSCFCGLRHSDIVALTWGNLK--------KGKVGKMELHMTQQKTQEILSLP 288

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                   L +  ++P    +    ++ G     + +     G+    T H+ RH+ AT 
Sbjct: 289 LSKEALKQLPVRGKVPDTEKVFKGLISLGRTNEILPKWAAKAGIQKHITFHSARHTHATM 348

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           +++ G DL ++  +LGH  + TTQIY  +  ++    +
Sbjct: 349 MITLGADLYTVSKLLGHTNIQTTQIYAKIVDESKEKAI 386


>gi|229079787|ref|ZP_04212320.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock4-2]
 gi|228703627|gb|EEL56080.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock4-2]
          Length = 369

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 57/315 (18%), Positives = 116/315 (36%), Gaps = 39/315 (12%)

Query: 18  RQNWLQNLEIERGLS--KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            +++L +    + +S  K T   Y+        F+  +    I +  + +L+   I+   
Sbjct: 65  LKDYLNHWLEIKSMSIEKSTFAGYK-------AFINQHVIPSIGMVALHKLNVIHIQKCY 117

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                + I + S+      +KS L    K+ I + +        KK  +  +   E++  
Sbjct: 118 KTAIDKGIANNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKTPIQTWTEEEVK 177

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
             + +     S E+++      AI       G+R+ E L L  Q+I  ++ T+ I     
Sbjct: 178 KFLAH-----SQESRYHIGYLLAI-----TTGMRLGEVLGLRWQDIDFEKHTVTINQTSG 227

Query: 196 KI-------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-----FRGIRGKP 237
                          R +P+      A+ ++  L   +        L          G+ 
Sbjct: 228 HDNKIKQTAKTNSSKRTIPVPNETIAALKKHKILINKEKLRFGSAYLDQDLINCNEFGRI 287

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
           +    F++   ++   +G+      H LRH+ AT LL  G + + I   LGH  +S T  
Sbjct: 288 IKRAHFRKSFIRMTHKVGI-KEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLS 346

Query: 297 IYTNVNSKNGGDWMM 311
           +Y++V      + + 
Sbjct: 347 VYSHVLPNMQEEAVK 361


>gi|168178970|ref|ZP_02613634.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum NCTC 2916]
 gi|182670087|gb|EDT82063.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum NCTC 2916]
          Length = 199

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 81/190 (42%), Gaps = 10/190 (5%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L +++A+ L + ++            R+ A+  + Y CGLR SE   +   +   D+ 
Sbjct: 10  KYLTQQEAIRLFNAIIFS----DNSHAVRDLALFRVAYRCGLRASEISLIKLDDYNADKG 65

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            L  +  KG     + L  + +KA+  Y        N      L +  +  P++      
Sbjct: 66  DLYCKRLKGSNNNTIRLDATTKKALDTYIRDYKIFCNSET---LSKSQKNNPISRQTLDY 122

Query: 246 YIRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            +++  +   +   +    HTL+H+ A HL  +  D++ +Q  LGH  +S T+IY    +
Sbjct: 123 LMKKYCKIANISDKSKHHFHTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEIYFQFTT 182

Query: 304 KNGGDWMMEI 313
           K      M++
Sbjct: 183 KQQEKMYMKL 192


>gi|225573305|ref|ZP_03782060.1| hypothetical protein RUMHYD_01496 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039332|gb|EEG49578.1| hypothetical protein RUMHYD_01496 [Blautia hydrogenotrophica DSM
           10507]
          Length = 421

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/319 (15%), Positives = 115/319 (36%), Gaps = 41/319 (12%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + L  + G+   TL +Y      F+  L    +E    + I Q+  ++ + F+ K +   
Sbjct: 89  RYLSTKTGVKPNTLANY-----NFVKNL--MKKEPFNGKKISQVKTSDAKLFLIKLQQDG 141

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLKKSNSLPR-ALNEKQALTLVDN 140
               ++K     ++   +      +  ++     +  +  ++S+ R A+  KQ    +  
Sbjct: 142 RRYSTIKTVRGVLRPAFQMAVDDDVLRKNPFGFELATVVVNDSVTREAITRKQMRQFLKF 201

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--------- 191
           V          +  +   ++Y+L+  G+RISE   LT +++      + I          
Sbjct: 202 V------HDDNVYCKYYEVVYILFHTGMRISEFCGLTLKDLDMKNRIINIDHQLQRTSDM 255

Query: 192 -----------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                      G         +    +  I +        +       LF    G PL  
Sbjct: 256 RLIIESTKTNAGTRKLPMSEDVFRCFQAIIEDREAPRYERVVDGYTGFLFTDKEGLPLVA 315

Query: 241 GVFQRYIRQLRRYLG-----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             ++     + +           + T H  RH++ +++  +G + +++Q ++GH  +  T
Sbjct: 316 MHWEHRFNHMVKRYNDIYRVQMPNITPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDIGVT 375

Query: 296 -QIYTNVNSKNGGDWMMEI 313
              YT++  ++  D +  +
Sbjct: 376 LNTYTHLGLEDAMDELKRV 394


>gi|168182741|ref|ZP_02617405.1| transposition regulatory protein TnpA [Clostridium botulinum Bf]
 gi|168183287|ref|ZP_02617951.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Bf]
 gi|168184606|ref|ZP_02619270.1| ribose-5-phosphate isomerase B [Clostridium botulinum Bf]
 gi|168185180|ref|ZP_02619844.1| transposition regulatory protein TnpA [Clostridium botulinum Bf]
 gi|168185221|ref|ZP_02619885.1| transposition regulatory protein TnpA [Clostridium botulinum Bf]
 gi|168185244|ref|ZP_02619908.1| phage integrase family protein [Clostridium botulinum Bf]
 gi|182671698|gb|EDT83659.1| phage integrase family protein [Clostridium botulinum Bf]
 gi|182671743|gb|EDT83704.1| transposition regulatory protein TnpA [Clostridium botulinum Bf]
 gi|182671771|gb|EDT83732.1| transposition regulatory protein TnpA [Clostridium botulinum Bf]
 gi|182672361|gb|EDT84322.1| ribose-5-phosphate isomerase B [Clostridium botulinum Bf]
 gi|182673592|gb|EDT85553.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Bf]
 gi|182674242|gb|EDT86203.1| transposition regulatory protein TnpA [Clostridium botulinum Bf]
          Length = 376

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 57/372 (15%), Positives = 128/372 (34%), Gaps = 81/372 (21%)

Query: 10  VSFELLKERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           V+ +L    +  L+ +  +     ++ TL+ Y    + +  +L             R ++
Sbjct: 17  VADDLGSPIEPILKFIRFKDNTNYARNTLRMYCQHLKLYFEYLQQRE------LDFRDIT 70

Query: 68  YTEIRAFISKRR--------------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTES-- 111
             ++  F++  +                    R++   ++ + +F  Y+ + +  + +  
Sbjct: 71  IDDLALFVNWLQNPYESLKVIPGTHIESARSPRTINIIVNTVLTFYDYILRHEKYSNNIS 130

Query: 112 ---------------------------NILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
                                         N+  LK   S P+ LN+++  TLV      
Sbjct: 131 DRLKRFVSIPSRNFKGFLYGIAYEHKKVASNILKLKVPKSKPKTLNKEEIETLVRAC--- 187

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI------- 197
                   + R+  +L LLY  G+RI EALSL  ++       + ++ +G          
Sbjct: 188 -------NNLRDKFLLSLLYETGMRIGEALSLWIEDFDISDMVIDLKDRGQLENNAEIKT 240

Query: 198 ----RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG--IRGKPLNPGVFQRYIRQLR 251
               R + +  ++    +EY      +      + +      + K +         R L+
Sbjct: 241 VSSPRRIDISQNLADMFMEYIAEYHTEEVETNHIFIKISGDNKYKAMTYIDVDNLFRTLK 300

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWM 310
           +   +    T H  RHS  T L   G     ++   GH  + TT   Y + + +     +
Sbjct: 301 KKTEI--YVTPHMFRHSSLTVLRMAGWQPELLRIRAGHKNIYTTMNTYIHPSDEE----I 354

Query: 311 MEIYDQTHPSIT 322
            + +++T P++ 
Sbjct: 355 TKEFEKTRPNLD 366


>gi|301024203|ref|ZP_07187907.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 69-1]
 gi|300396658|gb|EFJ80196.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 69-1]
          Length = 179

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/144 (31%), Positives = 61/144 (42%), Gaps = 3/144 (2%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLC 217
           ++ L Y  GLR+SE LSL   ++      + IQ  K     + PL      AI  + +  
Sbjct: 1   MILLAYFHGLRVSELLSLQLSDLELTTEKIYIQRIKNGFSTVHPLQKEEVIAITNWLNER 60

Query: 218 PFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
                 + N    LF    GKPL+   F   +    +  GL +    H LRH+    L  
Sbjct: 61  NSLNVKHFNDNPWLFVSRTGKPLSRQRFYNIVSAAGKNAGLNIKVHPHMLRHACGYSLAD 120

Query: 276 NGGDLRSIQSILGHFRLSTTQIYT 299
           NG D R IQ  LGH  +  T IYT
Sbjct: 121 NGVDTRLIQDYLGHRNIRHTVIYT 144


>gi|268679866|ref|YP_003304297.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268617897|gb|ACZ12262.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 390

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 58/312 (18%), Positives = 114/312 (36%), Gaps = 42/312 (13%)

Query: 23  QNLEIER-GLSKLTL-QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +  E+++  L + TL ++     +Q L +        +T   + +     +         
Sbjct: 86  EYFELQKTQLREHTLYRNICHYRKQILPYFGHRLLTTLTPLDLEKWQNQLL--------- 136

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
            K    +++R  S + S  K      I   + +  +   K    LP A+ E+++      
Sbjct: 137 SKYKHSTVQRYRSILYSMFKKAFINDIIPRNPLEKVTAPKM---LPNAMEEEESQDPFTQ 193

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK------- 193
             ++T          N   + ++   G+R  E ++LT  +I   +  + +          
Sbjct: 194 DEINTIMSHATGYMAN--FIKIMLSTGMRPGELVALTWTDIDFSRKIISVNKTRLRSPRS 251

Query: 194 ----------GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-LNPGV 242
                         R + L P+  KA LE  +L         Q  +F     +P  N  V
Sbjct: 252 KAVVDGPVKTNAGKRSIDLFPATEKAFLEQQEL------TGWQKYIFLNPSNRPFYNHDV 305

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
                R + +   +      + LRH+FA+ L+SNG D+  +   LGH  +S T +IYT  
Sbjct: 306 IGVNFRNILKRSSIKERV-LYNLRHTFASQLISNGADIVYVSKTLGHKDVSITLKIYTKF 364

Query: 302 NSKNGGDWMMEI 313
             +     + ++
Sbjct: 365 IKEEDAVRLEKM 376


>gi|299146487|ref|ZP_07039555.1| integrase [Bacteroides sp. 3_1_23]
 gi|298516978|gb|EFI40859.1| integrase [Bacteroides sp. 3_1_23]
          Length = 409

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 106/295 (35%), Gaps = 34/295 (11%)

Query: 34  LTLQSYE------CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
            T+ +Y           +F+   + Y    I+I+ I  +  T+   ++  R   K G  +
Sbjct: 126 KTIATYRKYEVTRRHLAEFIQ--SKYNVSDISIKEISPMFITDFELYL--RTACKCGYNT 181

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             + +   K  +   +   I       + + ++        L E +   ++   ++    
Sbjct: 182 TAKFMQFFKRIIIIARNNGILVGDPFASYK-IRLEKVDRGYLTEDEIKIILKKKMVSERL 240

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKGDKIRIVPLL 203
           E          +      CGL  S+  +L  +N       +   +  + K +    VPLL
Sbjct: 241 E------HVRDLFVFSCFCGLAYSDVANLRQENIQKSFDGNLWIITKRQKTNTDVNVPLL 294

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              +  + +Y            +  L  G     ++      Y++++    G+  + T H
Sbjct: 295 DIPKMILKKY------------KGKLPDGKILPVISNQKLNAYLKEIADICGIKKNLTFH 342

Query: 264 TLRHSF-ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
             RH+F  T  LS G  + ++  +LGH  + TTQIY  + +   G  M  +  + 
Sbjct: 343 LARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSKIGSDMQGLDKKF 397


>gi|262382819|ref|ZP_06075956.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262295697|gb|EEY83628.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 407

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/301 (17%), Positives = 117/301 (38%), Gaps = 27/301 (8%)

Query: 20  NWLQNLE-IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           N+L   +      +K  ++  +    +F  FL               ++   +  F++  
Sbjct: 122 NFLDYFQAYINNYTKKDIRMVQIALSRFKDFLKEQYPMNEFSIKPELITKEMMEQFVAYL 181

Query: 79  RTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQAL 135
           +++ +G   +S+ +     K  ++Y  +  +  ++   ++     S  L +  L+ ++  
Sbjct: 182 QSRSVGEGAKSIYQRF---KKVIRYAIEHDVMLKNPCKSVTCKVDSQMLRKDVLSPEEIQ 238

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--GK 193
            LV        H          A ++ LY CGLR  +   LT +N+      L+ +    
Sbjct: 239 KLV------ACHYDNENPNVRRAFVFCLY-CGLRFCDVKDLTYKNVDYANRLLKFEQSKT 291

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
                   ++  +   +L      P D N L   LP +              + +++  +
Sbjct: 292 KGHSASSGVVIPLNDGLLSIIGEAPADKNCLIFDLPTYESCC----------KSVKRWVK 341

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    + H  RHSFA ++L+NG +++++ S+LGH  L  T+ YT    K   + +  
Sbjct: 342 RAGIDKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLKEEAINS 401

Query: 313 I 313
           +
Sbjct: 402 L 402


>gi|229825085|ref|ZP_04451154.1| hypothetical protein GCWU000182_00435 [Abiotrophia defectiva ATCC
           49176]
 gi|306826701|ref|ZP_07460004.1| transposase [Streptococcus pyogenes ATCC 10782]
 gi|229790457|gb|EEP26571.1| hypothetical protein GCWU000182_00435 [Abiotrophia defectiva ATCC
           49176]
 gi|304431149|gb|EFM34155.1| transposase [Streptococcus pyogenes ATCC 10782]
          Length = 396

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 109/285 (38%), Gaps = 33/285 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +    ++ I   +I  +  ++ + +  + + +     ++      +K+      +     
Sbjct: 110 MRILEKDTIGACSIENVKMSDAKEWALRMKEKGYSFITISNHKRSLKAAFYTAIQDDCIR 169

Query: 110 ESNI-LNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++    ++  + + ++ P+  L+  Q  +L+  V      +  +    +  I+  L G G
Sbjct: 170 KNPFDFHINTVIEDDTEPKIPLSPMQEESLLSFV----KSDKVYYKYYDELII--LLGTG 223

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAIL 211
           LRISE   LT  +I  +  T+ +                    + IR +P+   V +A+ 
Sbjct: 224 LRISEFCGLTDSDIDFENRTINVDHQLQYSGKKSYRIETPKTENGIRKIPMSDRVLEALQ 283

Query: 212 EYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTAH 263
                              LF    G P N   +    R+L           LP+ TT H
Sbjct: 284 RVMQNRRKSDFTVDGYTGFLFLTRNGTPQNYINYDIMFRKLVEKYNKKHEEVLPVVTTPH 343

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGG 307
           TLRH+F T++ + G + +++Q ++GH  ++ T   Y +    +  
Sbjct: 344 TLRHTFCTNMANAGMNPKALQYLMGHANITMTLNYYAHATFDSAQ 388


>gi|111025266|ref|YP_707686.1| integrase/recombinase [Rhodococcus jostii RHA1]
 gi|110824245|gb|ABG99528.1| probable integrase/recombinase [Rhodococcus jostii RHA1]
          Length = 410

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 101/279 (36%), Gaps = 25/279 (8%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102
            RQ L  L     +         +   ++R F+            +  ++  +K F  +L
Sbjct: 136 IRQLLTHLRDRGHDSFG-----SVGLDDVRGFLMAVAPNHRSG--MGNTVWAVKRFFSFL 188

Query: 103 KKRKI--TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
              ++       +L+  + ++  +LPR   + +   L+             +  R+ A++
Sbjct: 189 NDFELSDLPVHAMLSQVSPRRIRTLPRF-TQDEVARLL-----AVIDTATAVGNRDYAMV 242

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
            L    GLR  +   L  ++I   +  +RI Q K      +PL      A+ +Y      
Sbjct: 243 RLAVSTGLRCGDITDLRLESIDWRRDEIRIVQRKTAATLALPLTAEAGNAVADYVLNARP 302

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST----TAHTLRHSFATHLLS 275
             +   ++ L        L        +R+     G+        T H LR +  T L+ 
Sbjct: 303 ASDA-PEVFLRANAPHVKLTGPTGALIMRRYLAAAGIHHKAGDGKTFHALRRTLGTRLIE 361

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            G +L     ILGH R+ +++ Y  +++    D + E Y
Sbjct: 362 TGTELPMTAQILGHARIDSSKRYIALDT----DSLRECY 396


>gi|307826179|ref|ZP_07656390.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307732818|gb|EFO03684.1| integrase family protein [Methylobacter tundripaludum SV96]
          Length = 328

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 100/250 (40%), Gaps = 26/250 (10%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKR---SLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           +L+  +      KR    I  +++      LS +  F K  K + I   + I  +  +K 
Sbjct: 97  RLTAEQFVEHRYKRLQSGISAKTVNNQHGYLSAV--FNKLRKLKVIDYGNPINEVDFIKI 154

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
                  L+  Q   L+D + +   +++ W       +  +    G R  EA  L  + +
Sbjct: 155 QERQLSYLSVDQIKLLLDTIKIGCVNQSTWY------VAQICLRTGARWGEAERLRFKQL 208

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
            + + T     K  K R +PL       ++ +          N    +F          G
Sbjct: 209 HNCRVTYEF-TKSKKTRTIPLDGEFYNDLIRWAGY------KNPDDRVFTNCI------G 255

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            F+R +   R  + L     +H LRHSFA+H + NGG++ ++Q ILGH  +S T  Y ++
Sbjct: 256 AFRRAVT--RSEIELQKGQNSHVLRHSFASHFIMNGGNILTLQKILGHADISQTMTYAHL 313

Query: 302 NSKNGGDWMM 311
             ++  D + 
Sbjct: 314 APEHLADAVR 323


>gi|290957659|ref|YP_003488841.1| integrase [Streptomyces scabiei 87.22]
 gi|260647185|emb|CBG70288.1| putative integrase [Streptomyces scabiei 87.22]
          Length = 407

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 63/334 (18%), Positives = 118/334 (35%), Gaps = 59/334 (17%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P+     L    + WL  L+I   L++ T ++YE        F   +    +  +T+  L
Sbjct: 75  PKRGDITLRAWSKEWLG-LQI---LAEGTRRNYE-------GFTRNHVVPHLGRKTLAGL 123

Query: 67  SYTEIRAFISKRRT--QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
              +   FI+      + +   ++   +  + + ++     K   E+    ++  + S+ 
Sbjct: 124 VKKDFEKFIADLHRNGEGMAASTINDRMKFVAAMMQAAVTEKRIAENPAAGVKVPRTSS- 182

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
              A++E +  TL +  L+      K+I  +    +YL    GLRISE L+   +    D
Sbjct: 183 --FAVDEDEIPTLEEVDLVA-----KYISPQYRLTIYLQAAAGLRISETLAFATECRRTD 235

Query: 185 QSTLRIQGKGDKIRIVPLLPSV--------------------------RKAILEYYDLCP 218
              +R Q      R       V                           +       +  
Sbjct: 236 FIRVRWQVSSKANRGDCRTRFVPLKHRAEGEYRDIPTAPFLEEEIVAHAERWDAVPVVFT 295

Query: 219 FDLNLNIQLPLF-----RGIRGKPLNPGVFQRYIRQLRRYLGL-----PLSTTAHTLRHS 268
                + +L +F     RG    P     +  + ++  +  GL         T H LRH 
Sbjct: 296 DKGGRDKELEVFFAPRERGKGTMP-TATTYAYHFKKALKAAGLVRADGKPKYTPHGLRHF 354

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           FA+  L+NG  +  +   LGH  + TT  IY ++
Sbjct: 355 FASTALANGIPIHEVSRWLGHKSIKTTVDIYGHL 388


>gi|256617839|ref|ZP_05474685.1| integrase [Enterococcus faecalis ATCC 4200]
 gi|256854186|ref|ZP_05559550.1| predicted protein [Enterococcus faecalis T8]
 gi|256960097|ref|ZP_05564268.1| integrase [Enterococcus faecalis Merz96]
 gi|256597366|gb|EEU16542.1| integrase [Enterococcus faecalis ATCC 4200]
 gi|256709746|gb|EEU24790.1| predicted protein [Enterococcus faecalis T8]
 gi|256950593|gb|EEU67225.1| integrase [Enterococcus faecalis Merz96]
          Length = 382

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 56/328 (17%), Positives = 113/328 (34%), Gaps = 42/328 (12%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKIT 59
           + N +P   +    +    WL+N        K T++  SY        I    +      
Sbjct: 55  QKNGIPSSTNITFQEVAFMWLENY-------KNTVKESSYSRT----EIIFRKHILPSFG 103

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
              I ++S    +  ++   ++    +     ++ +    K+     +T ++ ++N+   
Sbjct: 104 KIEISKISTAYCQKIVNTWHSKG-SSKQYPLFINYMNQVFKFAINIGVTNQNPVINVIVP 162

Query: 120 K-----KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           K      S    +   + Q    + ++      E+ +I  R+  +  LL   G RI E L
Sbjct: 163 KNQDIITSEKKIKFYTKDQLQIFLKSIEQS---ESTYITIRDYTLFRLLAFSGCRIGELL 219

Query: 175 SLTPQNIMDDQSTLRIQGK---------------GDKIRIVPLLPSVRKAILEY-YDLCP 218
           +LT  ++      L+I                      R + L       + ++  +   
Sbjct: 220 ALTWDDLNIKTGELQINKTIAKSDHYYVSNTPKTKKSNRTLILDAKTITILKKWKLEQKK 279

Query: 219 FDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
           + L L    P  +F     +              R+   LP +   H  RH+ A+ L   
Sbjct: 280 YLLKLGYTQPSRIFTNEENEFTINQAITDRYNIYRKKANLP-NIGLHGFRHTHASLLYYA 338

Query: 277 GGDLRSIQSILGHFRLSTT-QIYTNVNS 303
           G D + +Q  LGH  + TT   YT++ +
Sbjct: 339 GADHKEVQERLGHANIKTTLDTYTHLTN 366


>gi|152991432|ref|YP_001357154.1| phage integrase family site specific recombinase [Nitratiruptor sp.
           SB155-2]
 gi|151423293|dbj|BAF70797.1| site-specific recombinase, phage integrase family [Nitratiruptor
           sp. SB155-2]
          Length = 365

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 104/271 (38%), Gaps = 24/271 (8%)

Query: 53  YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ES 111
           + +       I  ++   I+    K+  +    +++   ++ + + +    ++ +    +
Sbjct: 109 HIQPTFGSTPIAAITPEAIQKLQKKKINEGYSYKTVNHIINLLSTIINVGIEKGLYQGSN 168

Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
               ++ LK  N+  R L+  +   L+D         T   +        L    G R+ 
Sbjct: 169 PAKKVKRLKVDNARERFLSVDEVKLLLD---------TVKDNPTLYLFCNLSLSTGGRLE 219

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
             L++  ++I  +  T++++   +       +     ++L+        L  N  +    
Sbjct: 220 TILAIQKKDIDLESGTIKLKDFKNDSTYTGFINDTLHSLLKDLL---PQLKANDYI---L 273

Query: 232 GIRGKPLNPGVFQRYIRQLRRYL---GLPLS-----TTAHTLRHSFATHLLSNGGDLRSI 283
               KPL     Q  ++ +   L   GL  +        HTLRH+FA+HL  NG  + +I
Sbjct: 274 SKSSKPLTSRQIQVPLKPILDRLFNQGLQPNDRKNRVVIHTLRHTFASHLAINGTPIYTI 333

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           Q ++ H  ++ T  Y  +   +G + +  +Y
Sbjct: 334 QRLMNHKDINMTLRYAKLAPDSGREAVRSLY 364


>gi|258649068|ref|ZP_05736537.1| integrase [Prevotella tannerae ATCC 51259]
 gi|260850700|gb|EEX70569.1| integrase [Prevotella tannerae ATCC 51259]
          Length = 438

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 63/286 (22%), Positives = 108/286 (37%), Gaps = 24/286 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSLKR 90
           S  TLQ Y    + F  FL      K     + +L++T I  F    RT       +  +
Sbjct: 160 SVATLQKYNVCKKHFAAFLNEKY--KRCDIRLSELTFTVIHDFDIYLRTTAGQNPNTATK 217

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           ++   K+     +K         +N  +          L +++ + +      +      
Sbjct: 218 TMKTFKTITILGRKMGALNHDPFIN-HHFHLEPVNRGFLTDEEIMKI-----ANKDFGIN 271

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVR 207
            ++      ++  +  GL   +  +LTP NI    D Q  +  + K      V LL   +
Sbjct: 272 RLELVRDVFIFSCF-TGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPK 330

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + I +Y      D  L   LP+        L       Y++++    G+    T H  RH
Sbjct: 331 RIITKYGHKTYRDGKL---LPV--------LTNQKINAYLKEIADLCGIKKRLTFHLARH 379

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +FAT  LS G  + S+  +LGH  + TTQIY  + +K     M E+
Sbjct: 380 TFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEEL 425


>gi|116622415|ref|YP_824571.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225577|gb|ABJ84286.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 314

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 62/291 (21%), Positives = 104/291 (35%), Gaps = 26/291 (8%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
             L + RGL    ++  E   ++F  FLA              ++      + ++   Q+
Sbjct: 10  DYLALRRGLGFKLVRH-EAGLKEFASFLARKRS--------SHITVALALEWATQHAQQQ 60

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
             + +    L  ++ F +Y       TE   L +   + + + P   ++ +   L+    
Sbjct: 61  PAEWTA--RLCVVRGFARYWSATDPLTEVPPLGLLPYRPARAQPYFYSDHEIRKLLRAAK 118

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVP 201
              S +          +  LL   GLR+ EAL L   ++   +  L I+G K  K R+VP
Sbjct: 119 TRPSIDPLRPCTY-HCLFGLLAVTGLRLGEALGLRLGDMDWSEGILTIRGAKFGKSRLVP 177

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL----- 256
           L  S  K + +Y            +      + G  L+ G   R    L R +GL     
Sbjct: 178 LHTSTCKVLADYAKRRDERFGARAEGYFLVNLNGNRLDKGEVHRAFYLLSRQIGLRAVDA 237

Query: 257 PLSTTAHTLRHSFAT----HLLSNGGD----LRSIQSILGHFRLSTTQIYT 299
                 H  RH FA         NG D    L  + + LGH  ++ T  Y 
Sbjct: 238 SRGPRLHDFRHRFAVETLLRWYRNGEDPKRRLPILSTYLGHAHVTDTYWYL 288


>gi|323963898|gb|EGB59392.1| phage integrase [Escherichia coli M863]
          Length = 337

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 60/316 (18%), Positives = 109/316 (34%), Gaps = 55/316 (17%)

Query: 19  QNWLQNLEIERGLSKLTLQSY------ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           + WL   E  R LS+L    Y        D ++ +  L       +      +L+  +  
Sbjct: 49  KPWLGEKEDRRHLSELIELWYSLYGQTLADPKRLMAKLGIIC-NGLGDPIASELTAGDFT 107

Query: 73  AFISKRRTQKI-----------GDRSLK---RSLSGIKSFLKYLKKRKITTESNILNMRN 118
            +   R   ++             R++    R+LS +  F    K    +  + +  +  
Sbjct: 108 KYREARLKGEVRNEDGTLMSPVKPRTVNLEQRNLSSV--FGTLKKLGHWSAPNPLAGLPT 165

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            K +      L+  +   L+       S            I  +    G R SEA +L  
Sbjct: 166 FKIAEGELAFLSTDEIKRLLAACAESQS-------PSLLMIAKICLATGARWSEAENLQG 218

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
             I   + T   + KG K R VP+   +   +               +  LF   R    
Sbjct: 219 HQISKYRITYT-KTKGKKNRTVPISQDLYDEL------------PKNRRKLFTPCR---- 261

Query: 239 NPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
                 +   +  +  G+  P     H LRH+FA+H + NGG++  ++ ILGH  +  T 
Sbjct: 262 ------KAFERAVKRAGIDLPEGQCTHVLRHTFASHFMMNGGNILVLRDILGHADIKMTM 315

Query: 297 IYTNVNSKNGGDWMME 312
           IY + +  +  D + +
Sbjct: 316 IYAHFSPDHLEDAVTK 331


>gi|307323750|ref|ZP_07602960.1| integrase family protein [Streptomyces violaceusniger Tu 4113]
 gi|306891239|gb|EFN22215.1| integrase family protein [Streptomyces violaceusniger Tu 4113]
          Length = 359

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 65/312 (20%), Positives = 108/312 (34%), Gaps = 42/312 (13%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GL+  T+     D         ++       + +  +   +  A+  K          L 
Sbjct: 41  GLADGTI---RGDVGHLDQIRTWFG------RPLWDMEPADADAYFGKVLRHSPSGTRLG 91

Query: 90  RSLSGIKSFLKY---------LKKRKITTESNILNMRNLKKSN--SLPRALNEKQALTLV 138
           RS   + ++  +          +      E  I  M   + +    L    +E +  TL 
Sbjct: 92  RS-QALSTYFMFLELRHKVEIHRMTGRVVECPIDEMNRPRGAKDAQLRIPPSEPEVETLF 150

Query: 139 DNVLLHTSHETKW-IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQ--- 191
                  +   K+   ARN     L+   GLR+SEA  L   +I  D      L ++   
Sbjct: 151 TGWGGELATCRKFAPTARNYTASKLMSQVGLRVSEACKLDLADIKWDLGRFGKLHVRHGK 210

Query: 192 ---GKGDKIRIVPLLPSV---RKAILEYYDLCPFDLNLNIQLPLFRGIRGK------PLN 239
              G G + R+VPL+       +  +E       D +     PLF   R         + 
Sbjct: 211 GARGSGPRERMVPLINGADRTLRWFIEDVWGQFDDDHTRPGAPLFPSERRCADGSSRRVG 270

Query: 240 PGVFQRYIRQLRRYL--GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
               +  ++   +    G     T H LRH  A+ L +NG DL +IQ +LGH  ++TT  
Sbjct: 271 DDALRGGLKGAAKAHLPGWGEKLTPHVLRHFCASQLYANGLDLLAIQEVLGHSWIATTMR 330

Query: 298 YTNVNSKNGGDW 309
           Y +V      D 
Sbjct: 331 YVHVQQTRVEDA 342


>gi|261207379|ref|ZP_05922066.1| predicted protein [Enterococcus faecium TC 6]
 gi|289566793|ref|ZP_06447205.1| predicted protein [Enterococcus faecium D344SRF]
 gi|260078439|gb|EEW66143.1| predicted protein [Enterococcus faecium TC 6]
 gi|289161420|gb|EFD09308.1| predicted protein [Enterococcus faecium D344SRF]
          Length = 382

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 56/338 (16%), Positives = 113/338 (33%), Gaps = 42/338 (12%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKI 58
           ++   +P   +    +  + WL++        K T++  SY        I    +     
Sbjct: 56  LQKTGMPTSTNTTFKEAAELWLESY-------KKTVKESSYSRT----KIIFNKHIYPNF 104

Query: 59  TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
               + +++    +  ++    +    +     ++ +    KY     +T+++  LN+  
Sbjct: 105 GNIKLSKINTAYCQKVVNDWSEKGTSKQ-YPLFINYMNKVFKYAINIGLTSDNPTLNLII 163

Query: 119 LK----KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            K        L +   ++Q    ++ V   +  +  +   R+  +  LL   G RI E L
Sbjct: 164 PKPQIETEKKL-KLYTKEQLELFLNEV---SQEQNPYFKNRDYTLFRLLAFSGCRIGEIL 219

Query: 175 SLTPQNIMDDQSTLRIQGK---------------GDKIRIVPLLPSVRKAILEY---YDL 216
           +LT  NI    + + I+                     RI+ L     K +  +      
Sbjct: 220 ALTWDNINFKTNEMAIKKTVARSDKYYISETPKTKKSNRIIYLDEKTIKQLKFWKLEQRK 279

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
             F L       LF                    R   GLP     H  RH+ A+ L   
Sbjct: 280 YLFQLGFTKANFLFTNDENNFTINQAVAERYNIYRERAGLPY-IGLHGFRHTHASMLYEA 338

Query: 277 GGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
           G D + +Q  +GH  + TT   YT++ +    +   ++
Sbjct: 339 GADHKEVQERMGHANIKTTMDTYTHITNSKKEETTQKL 376


>gi|253688998|ref|YP_003018188.1| integrase family protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251755576|gb|ACT13652.1| integrase family protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 335

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 91/231 (39%), Gaps = 33/231 (14%)

Query: 83  IGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
           + + ++ R  S +++ F +  +  +   E+ +  +R  K+ +     L  ++   L+   
Sbjct: 123 LKEATVNREYSYLRAVFSELKRMGEWDKENPLDGIRQFKEGDQELAFLYPEEIKRLLAAC 182

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
               + +          I+ L    G R SEA  L    I+ ++ T   + KG+K R VP
Sbjct: 183 DESDNKDLGI-------IVRLCLATGARWSEAQDLKQSQILPNRVTFT-KTKGNKNRTVP 234

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLS 259
           +   +R  +               +  LF                 +   +  G+  P  
Sbjct: 235 ISEKMRSLL------------PKKRGALFTPAYES----------FKYAIKRAGIELPSG 272

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              H LRHSFA+H + NGG++  +Q ILGH  ++ T  Y + +  +    +
Sbjct: 273 QLTHVLRHSFASHFMMNGGNILVLQQILGHSTITMTMRYAHFSPDHLDAAV 323


>gi|168789851|ref|ZP_02814858.1| integrase [Escherichia coli O157:H7 str. EC869]
 gi|261227840|ref|ZP_05942121.1| phage integrase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258426|ref|ZP_05950959.1| putative integrase [Escherichia coli O157:H7 str. FRIK966]
 gi|189370614|gb|EDU89030.1| integrase [Escherichia coli O157:H7 str. EC869]
 gi|323163435|gb|EFZ49261.1| integrase [Escherichia coli E128010]
          Length = 312

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 103/257 (40%), Gaps = 29/257 (11%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNIL 114
           E +    + +L+ T +      R  Q I   ++ R +  + +    L        ++ + 
Sbjct: 77  EAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAMFTALISSGHFLNDNPVQ 136

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            ++ +K +      L++ + + L+D  L     E           + +L   G R  E  
Sbjct: 137 GLKGMKVNEREMGYLSKSECVQLLDA-LAENPDE--------RLAVEILLSTGARWGEVA 187

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +L  + ++  + T   + K  K R VP+  S+ + I                  +F    
Sbjct: 188 ALEQRRVLHCRITFS-KTKNSKNRTVPISESLFEKI-----------KKRGGKLVFPT-- 233

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              L+  + +  I+ +     +P     H LRH+FA+H + NGG++ ++Q ILGH ++ T
Sbjct: 234 ---LDYPLVRDVIKTVA--PDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQT 288

Query: 295 TQIYTNVNSKNGGDWMM 311
           T IY ++      D + 
Sbjct: 289 TMIYAHLAPDYLQDAVR 305


>gi|319937805|ref|ZP_08012208.1| integrase [Coprobacillus sp. 29_1]
 gi|319807240|gb|EFW03854.1| integrase [Coprobacillus sp. 29_1]
          Length = 390

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 56/292 (19%), Positives = 103/292 (35%), Gaps = 34/292 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +    E+K+  ++I  +  ++ + +  + + +     ++      +K+      +     
Sbjct: 103 MRLLKEDKLGARSIDTIKPSDAKEWALRMKDKGFSYNTINNHKRSLKASFYIAIQDDCVR 162

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
           ++      + K S  L     EK ALT      L +  +T  +  ++   + +L   GLR
Sbjct: 163 KNPF----DFKLSEVLENDTKEKVALTEEQEQALLSFIKTDNVYHKHYDDVLILLKTGLR 218

Query: 170 ISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAILEY 213
           ISE   LT  +I      + I                      IR VPL     +A    
Sbjct: 219 ISELCGLTVADIDFKNEVVIIDHQLLKSKEQGYYIETPKTKSGIRQVPLSRETIQAFQRV 278

Query: 214 YDLCPFDLNL---NIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGLPLSTTA 262
               P             LF   +GKP        L   + ++Y +  +         T 
Sbjct: 279 MKKRPKAEPFVIDGQSNFLFVNHKGKPKVAIDYNALFVRMVKKYNKHHKD--NPLPHITP 336

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
           HTLRH+F T L S   + + +Q I+GH  +S T   Y + +       +  +
Sbjct: 337 HTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQRL 388


>gi|293369636|ref|ZP_06616214.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292635340|gb|EFF53854.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 409

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 106/295 (35%), Gaps = 34/295 (11%)

Query: 34  LTLQSYE------CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
            T+ +Y           +F+   + Y    I+I+ I  +  T+   ++  R   K G  +
Sbjct: 126 KTIATYRKYEVTRRHLAEFIQ--SKYNVSDISIKEITPMFITDFELYL--RTACKCGYNT 181

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             + +   K  +   +   I       + + ++        L E +   ++   ++    
Sbjct: 182 TAKFMQFFKRIIIIARNNGILVGDPFASYK-IRLEKVDRGYLTEDEIKIILKKKMVSERL 240

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKGDKIRIVPLL 203
           E          +      CGL  S+  +L  +N       +   +  + K +    VPLL
Sbjct: 241 E------HVRDLFVFSCFCGLAYSDVANLRQENIQKSFDGNLWIITKRVKTNTDVNVPLL 294

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              +  + +Y            +  L  G     ++      Y++++    G+  + T H
Sbjct: 295 DIPKMILKKY------------KGKLPDGKILPVISNQKLNAYLKEIADICGIKKNLTFH 342

Query: 264 TLRHSF-ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
             RH+F  T  LS G  + ++  +LGH  + TTQIY  + +   G  M  +  + 
Sbjct: 343 LARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSKIGSDMQGLDKKF 397


>gi|258649152|ref|ZP_05736621.1| integrase [Prevotella tannerae ATCC 51259]
 gi|260850814|gb|EEX70683.1| integrase [Prevotella tannerae ATCC 51259]
          Length = 407

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 67/286 (23%), Positives = 112/286 (39%), Gaps = 24/286 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSLKR 90
           S  TLQ Y    + F  FL  Y + K     + +L++T I  F    RT       +  +
Sbjct: 129 SVATLQKYNVCKKHFAAFL--YEKYKRNDIRLSELTFTVIHDFDVYLRTTAGQNPNTATK 186

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           ++   K+     ++  +      +N  +          L +++ + + +        E  
Sbjct: 187 TMKTFKTITILGRRMDVLNHDPFIN-HHFHLEPVNRGFLTDEEIMKIANKDFGIHRLEL- 244

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVR 207
               R+  I       GL   +  +LTP NI    D Q  +  + K +    V LL   +
Sbjct: 245 ---VRDIFIFSCF--TGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTNVETNVLLLDIPK 299

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + I +Y      D  L   LP+        L       Y++++    G+  + T H  RH
Sbjct: 300 RIIAKYGHKTYRDGKL---LPV--------LTNQKINAYLKEIGDLCGIKKNLTFHLARH 348

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +FAT  LS G  + S+  +LGH  L TTQIY  + +K     M E+
Sbjct: 349 TFATMSLSKGVPMESVSKMLGHTNLKTTQIYARITNKKIEHDMEEL 394


>gi|228942827|ref|ZP_04105346.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228952547|ref|ZP_04114624.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228976709|ref|ZP_04137133.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228783010|gb|EEM31165.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228807158|gb|EEM53700.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228816841|gb|EEM62947.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326943508|gb|AEA19401.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 365

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 123/346 (35%), Gaps = 72/346 (20%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-------- 81
           G +  TL++Y    + F  FL          +  R++  + +  FI   R          
Sbjct: 40  GKAPNTLKTYCYHLKIFWCFLNEKN------KDYREVDISLLTEFIHWLRKSTDDINTIY 93

Query: 82  ----------KIGDRSLKRSLSGIKSFLKYLKKRK------------------------- 106
                     K  + S+    + +  FL Y  +                           
Sbjct: 94  LNDTKKLVYAKRTESSVNLITNCVIEFLDYQWRSGQILFNVKSKVTKEVHNTRRKYRKFL 153

Query: 107 -ITTESNI--LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
              T +    +N+  LK+     + +  KQA  +               + R+  I+ +L
Sbjct: 154 DHITHTPTTKINILKLKEPKRKIKTITTKQAELI----------HIACNNIRDELIIRIL 203

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKG---DKIRIVPLLPSVRKAILEYYDLCPFD 220
           Y  GLR SE LSL  ++   +  ++ ++       + R V +         +Y      +
Sbjct: 204 YEGGLRASELLSLWIEDFNINDGSITVRESKTQAGEKRKVYVSNETMNLFQDYIIDYHTN 263

Query: 221 L--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
              + ++ + L    +G+P+     Q  IR L +   +    TAHTLRH+ AT L   G 
Sbjct: 264 DVDSNHVFINLKGKNKGQPMQYWALQAVIRILSKKTKINF--TAHTLRHTCATQLYDLGM 321

Query: 279 DLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
           D   IQ +LGH ++ TT  +Y + + +       E   Q H  + +
Sbjct: 322 DAGIIQKLLGHAQVQTTLNMYIHPSEETIRKHWDEA--QQHRRMRK 365


>gi|229035345|ref|ZP_04189251.1| Integrase [Bacillus cereus AH1271]
 gi|228727958|gb|EEL79028.1| Integrase [Bacillus cereus AH1271]
          Length = 364

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 65/335 (19%), Positives = 133/335 (39%), Gaps = 43/335 (12%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-----------EKITIQTIRQLSYTEI 71
           + +E++  LS  TL  Y  +  +F  ++                 +I I+ +  L   E+
Sbjct: 29  EYIEMKAMLSPATLYGYITEFEKFFKWMIEKRIAVINGNVATEIHEIPIELLESLPLNEV 88

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALN 130
             F    +++ I  +++ R+ S +KS  KYL ++      N    RN+     L +  ++
Sbjct: 89  NRFHMYLKSEGIEIKAINRTFSALKSLFKYLSQKTEDEYGNSYLSRNVMDKIELHKEKID 148

Query: 131 EKQALTLVDNVLLHTSHETKWI-------------------------DARNSAILYLLYG 165
                  V N++ + + +  ++                           R+ A++ L+ G
Sbjct: 149 AAARADDVANMIFNNNDDAAFLRFLANDYEFILKETSTRKYNYFLRDKERDIALISLILG 208

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
            GLR+SE  SL+  ++   Q T+++  KG+K   +    S    + EY  +         
Sbjct: 209 TGLRVSELASLSLSSVNFRQKTIKVIRKGNKKSSILATQSSLDDVQEYLKVRQERYGCPP 268

Query: 226 QLPL-FRGI---RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
           +  + F      +   L+    Q  + +           + H LRH++AT+      DL 
Sbjct: 269 EEEIMFVTRYQGKYTQLSVRAIQNLVDKYTSA--FDEKRSPHKLRHTYATNHYKENKDLV 326

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            ++  LGH  +  T IYTN+N++   + +  +  +
Sbjct: 327 LLRDQLGHTSVEVTSIYTNINNEKKREAIDRLEKR 361


>gi|253987680|ref|YP_003039036.1| type 1 fimbriae regulatory protein fimb [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211638587|emb|CAR67207.1| type 1 fimbriae regulatory protein fimb [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253779130|emb|CAQ82290.1| type 1 fimbriae regulatory protein fimb [Photorhabdus asymbiotica]
          Length = 188

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/180 (25%), Positives = 77/180 (42%), Gaps = 8/180 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L + +  ++++   +  + E       N  ++Y+ +  G R+SEA  L   ++  ++ 
Sbjct: 5   KYLTQSEVESMLEMAKVGANPER------NYCLVYMSFIHGFRVSEARHLRLSDMELNER 58

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            L I+  KG      PLL    +AI  +  +    L  +    LF    GKPL      +
Sbjct: 59  CLYIRRLKGGFCTNHPLLRREIRAIKAWLKVRKTFLGAD-SDWLFLSRSGKPLTRQRIYQ 117

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            I +L +   + +    H LRH+    L   G D R IQ  LGH  +  T  YT  N++ 
Sbjct: 118 IISRLGQLANIAVVPHPHMLRHACGFALADRGVDTRLIQDYLGHKNIRHTVRYTASNAER 177


>gi|239828150|ref|YP_002950774.1| integrase [Geobacillus sp. WCH70]
 gi|239808443|gb|ACS25508.1| integrase domain protein SAM domain protein [Geobacillus sp. WCH70]
          Length = 269

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 90/200 (45%), Gaps = 12/200 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           + +   +  + ++++ E+ R L + T++ Y  +   F+  L     E      + + +  
Sbjct: 37  IEYTFEELLEIFIEDCEL-RNLREHTIKYYRSELNAFIKLLKEQEIE----LRVSEWTGE 91

Query: 70  EI-RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            I R  I   R + +   S+   L  +++F  +L+ R +   + + +++ LK    +   
Sbjct: 92  TIKRNVIMYMREKGLKTVSINSRLRAMRAFFNFLEGRNLIKSNPMKDIKLLKDRKRIVET 151

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
            + +Q   L     L T     ++  R+  I+ LL   G+R++E + +   +I+ +Q  +
Sbjct: 152 FDNQQIKALFKACDLRT-----FVGLRDYTIMMLLLETGVRVNELVGIKTTDIIWEQKVI 206

Query: 189 RIQ-GKGDKIRIVPLLPSVR 207
           RI+  KG   R VP+  ++ 
Sbjct: 207 RIRNTKGRFERFVPIQDTLL 226


>gi|293383852|ref|ZP_06629758.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis R712]
 gi|293388673|ref|ZP_06633167.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis S613]
 gi|307286791|ref|ZP_07566875.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0109]
 gi|312906933|ref|ZP_07765930.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis DAPTO 512]
 gi|312978812|ref|ZP_07790538.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis DAPTO 516]
 gi|291078769|gb|EFE16133.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis R712]
 gi|291081990|gb|EFE18953.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis S613]
 gi|306502103|gb|EFM71388.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0109]
 gi|310627187|gb|EFQ10470.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis DAPTO 512]
 gi|311288249|gb|EFQ66805.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis DAPTO 516]
 gi|315032392|gb|EFT44324.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0017]
 gi|323480155|gb|ADX79594.1| phage integrase family protein [Enterococcus faecalis 62]
          Length = 384

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 56/328 (17%), Positives = 113/328 (34%), Gaps = 42/328 (12%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKIT 59
           + N +P   +    +    WL+N        K T++  SY        I    +      
Sbjct: 57  QKNGIPSSTNITFQEVAFMWLENY-------KNTVKESSYSRT----EIIFRKHILPSFG 105

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
              I ++S    +  ++   ++    +     ++ +    K+     +T ++ ++N+   
Sbjct: 106 KIEISKISTAYCQKIVNTWHSKG-SSKQYPLFINYMNQVFKFAINIGVTNQNPVINVIVP 164

Query: 120 K-----KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           K      S    +   + Q    + ++      E+ +I  R+  +  LL   G RI E L
Sbjct: 165 KNQDIITSEKKIKFYTKDQLQIFLKSIEQS---ESTYITIRDYTLFRLLAFSGCRIGELL 221

Query: 175 SLTPQNIMDDQSTLRIQGK---------------GDKIRIVPLLPSVRKAILEY-YDLCP 218
           +LT  ++      L+I                      R + L       + ++  +   
Sbjct: 222 ALTWDDLNIKTGELQINKTIAKSDHYYVSNTPKTKKSNRTLILDAKTITILKKWKLEQKK 281

Query: 219 FDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
           + L L    P  +F     +              R+   LP +   H  RH+ A+ L   
Sbjct: 282 YLLKLGYTQPSRIFTNEENEFTINQAITDRYNIYRKKANLP-NIGLHGFRHTHASLLYYA 340

Query: 277 GGDLRSIQSILGHFRLSTT-QIYTNVNS 303
           G D + +Q  LGH  + TT   YT++ +
Sbjct: 341 GADHKEVQERLGHANIKTTLDTYTHLTN 368


>gi|284008591|emb|CBA75173.1| phage integrase [Arsenophonus nasoniae]
          Length = 300

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 93/234 (39%), Gaps = 27/234 (11%)

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  K+  R++   L+  ++    LK+      E+ + ++R  K   +    L+  +   L
Sbjct: 81  RLDKVSPRTMNLELAYFRAMFNELKRLGEWKHENPVESIRPFKTEEAEMSFLDHDEINLL 140

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +   +  +       +     ++ +    G R SEA SL   N+   + T     KG++ 
Sbjct: 141 LKECVNSS-------NKHLLTVVKICLSTGARWSEAESLRGCNVSKFRITYT-NTKGNRN 192

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R VP+   +   I E                LF            F+  ++  R  + LP
Sbjct: 193 RTVPISEELYNLIAE----------KKTIGALFSSCY------SAFRTALK--RTKIVLP 234

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               +H LRH+FA+H + NGG++  +Q ILGH  +  T  Y +    +  + + 
Sbjct: 235 DGQMSHVLRHTFASHFMMNGGNILVLQRILGHTDIKMTMRYAHFAPDHLDEAVR 288


>gi|221642176|ref|YP_002533263.1| integrase/recombinase, phage integrase family protein [Bacillus
           cereus Q1]
 gi|221243111|gb|ACM15820.1| integrase/recombinase, phage integrase family protein [Bacillus
           cereus Q1]
          Length = 361

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 64/335 (19%), Positives = 133/335 (39%), Gaps = 43/335 (12%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-----------EKITIQTIRQLSYTEI 71
           + +E++  LS  TL  Y  +  +F  ++                 ++ I+ +  L   E+
Sbjct: 26  EYIEMKAMLSPATLYGYITEFEKFFKWMIEKRIAVINGNVATEIHEVPIELLESLPLNEV 85

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALN 130
             F    +++ I  +++ R+ S +KS  KYL ++      N    RN+     L +  ++
Sbjct: 86  NRFHMYLKSEGIEIKAINRTFSALKSLFKYLSQKTEDEYGNSYLSRNVMDKIELHKEKID 145

Query: 131 EKQALTLVDNVLLHTSHETKWI-------------------------DARNSAILYLLYG 165
                  V N++ + + +  ++                           R+ A++ L+ G
Sbjct: 146 AGARADDVANMIFNNNDDAAFLRFLANDYEFILKETSTRKYNYFLRDKERDIALISLILG 205

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
            GLR+SE  SL+  ++   Q T+++  KG+K   +    S    + EY  +         
Sbjct: 206 TGLRVSELASLSLSSVNFRQKTIKVIRKGNKKSSILATQSSLDDVQEYLKVRQERYGCPP 265

Query: 226 QLPL-FRGI---RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
           +  + F      +   L+    Q  + +           + H LRH++AT+      DL 
Sbjct: 266 EEEIMFVTRYQGKYTQLSVRAIQNLVDKYTSA--FDEKRSPHKLRHTYATNHYKENKDLV 323

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            ++  LGH  +  T IYTN+N++   + +  +  +
Sbjct: 324 LLRDQLGHTSVEVTSIYTNINNEKKREAIDRLEKR 358


>gi|310828816|ref|YP_003961173.1| phage integrase family site specific recombinase [Eubacterium
           limosum KIST612]
 gi|308740550|gb|ADO38210.1| phage integrase family site specific recombinase [Eubacterium
           limosum KIST612]
          Length = 379

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 107/277 (38%), Gaps = 28/277 (10%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           ++ L+  +I+   SK  +  I   +LK     I   ++Y   +         ++   +  
Sbjct: 104 LKDLTALDIQEHYSKLVSDGISKPTLKTLSVVINPCIRYAFTQGKILIDFSRSIVLPEAK 163

Query: 123 NSLPRALNEKQALTL-VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
               ++    QAL+L ++N L+     TKW        +      GLR  E ++LT  +I
Sbjct: 164 KKQEKSRRASQALSLDMENALIKACAGTKW-----EVFILTDLNSGLRRGEIMALTWDDI 218

Query: 182 MDDQSTLRIQGKG---------------DKIRIVPLLPSVRKAILEYYDLCPFDL----- 221
             ++  + +                   + IR VP+   + + + ++             
Sbjct: 219 DLEKGIIDVNKTYDQRNKDQPIGPPKTENSIRQVPIPRFLAEKLKQHKVEQNKRRLLLSN 278

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
                  +F    G  +      R +    + +GL  S   H  R ++AT L     D++
Sbjct: 279 KYKNLNLVFPNDFGNYMAATTVGRALIDFAKEIGLE-SLNLHDFRDTYATRLYEKTKDIK 337

Query: 282 SIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQT 317
            +QS+LGH  ++TT  IYT+V+ +    ++  + ++ 
Sbjct: 338 MVQSLLGHSDIATTANIYTHVSLEEQSKYVQILDEKA 374


>gi|237794601|ref|YP_002862153.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
 gi|229261244|gb|ACQ52277.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
          Length = 355

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 65/322 (20%), Positives = 131/322 (40%), Gaps = 41/322 (12%)

Query: 3   GNNLPEIVSFELLKERQN-WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
            NN+   +S    K+  + +L++++I R  +  T+ +++     F+          ++ +
Sbjct: 56  KNNMDPSMSEITFKQFTDMYLEHMKIYR--TTNTILAFKTVLNHFVT---------LSNK 104

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLK---RSLSGIKSFLKYLKKRKITTESNILNMRN 118
            + ++S  +I+  +       +   +++   R L+ I  F   +    I  +    N++ 
Sbjct: 105 ELTKISNIDIQHIVDSLTLTGLNPSTIQEYIRKLNTI--FKSAMDDYNIIDKLPTKNLKF 162

Query: 119 LKKSNSL-PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
            K    +  RALNE +   L++           +   +   ++ L   CGLR+ E L LT
Sbjct: 163 NKSKQQVNKRALNENEENKLLE----------DFKSNKYYLVILLGLKCGLRLGEILGLT 212

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
             +I +   T+ I  +  ++            +          ++ N    L +  +   
Sbjct: 213 WSDIDEVNKTIIINKQWKQVNPTKYNFG---ELKSKNSNRIIPISKNTLDELKKHKKIVN 269

Query: 238 LNPGVF-----QRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           +N  +F           L R L L     T H LRH++AT L+SNG D +++  +LGH  
Sbjct: 270 INNRIFKFKNTNSSCICLNRLLKLKGYDITVHELRHTYATKLISNGVDFKTVAQLLGHTV 329

Query: 292 LSTTQIYTNVNSKNGGDWMMEI 313
             T + Y++VN     D M + 
Sbjct: 330 EQTMKTYSHVND----DMMKKA 347


>gi|228472546|ref|ZP_04057306.1| integrase [Capnocytophaga gingivalis ATCC 33624]
 gi|228275959|gb|EEK14715.1| integrase [Capnocytophaga gingivalis ATCC 33624]
          Length = 267

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 58/303 (19%), Positives = 115/303 (37%), Gaps = 38/303 (12%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++K+ +++L    ++  L+  T+ SY    R FL        EK  +  I + +    + 
Sbjct: 1   MIKQFKSFL----LKSNLAPNTIDSYVWTVRYFL--------EKYPV--INKPNLMAYKN 46

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+      K   +++   L  I  +L ++K+         L M  +K        L  + 
Sbjct: 47  FLLD----KYKAQTVNLRLQAINKYLDFVKRG-------SLKMSFVKVQQK--NFL--EH 91

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
            ++  D + L    +          +++ L   G R+SE + +  ++    Q  L I  K
Sbjct: 92  VISHADYLFLKAQLKKDGYQDW-YFLVWFLTATGARVSELIQIKAEH--LTQGYLDIYSK 148

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K+R + +   +R+    +               +F    GK + P    + ++     
Sbjct: 149 GGKVRRLYIPKLLREESSLWLKEKGI-----TSGYIFLNRFGKRITPRGIAQQLKVFAYK 203

Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             L P     H+ RH FA + L    DL  +  ++GH  + TT+IY    +      +  
Sbjct: 204 YQLNPKVVYPHSFRHRFAKNFLERFNDLTLLADLMGHESIETTRIYLRRTASEQQAIVDT 263

Query: 313 IYD 315
           I +
Sbjct: 264 IVN 266


>gi|254975124|ref|ZP_05271596.1| phage integrase family site specific recombinase [Clostridium
           difficile QCD-66c26]
 gi|255092513|ref|ZP_05321991.1| phage integrase family site specific recombinase [Clostridium
           difficile CIP 107932]
 gi|255306536|ref|ZP_05350707.1| phage integrase family site specific recombinase [Clostridium
           difficile ATCC 43255]
 gi|255314251|ref|ZP_05355834.1| phage integrase family site specific recombinase [Clostridium
           difficile QCD-76w55]
 gi|255516930|ref|ZP_05384606.1| phage integrase family site specific recombinase [Clostridium
           difficile QCD-97b34]
 gi|255650033|ref|ZP_05396935.1| phage integrase family site specific recombinase [Clostridium
           difficile QCD-37x79]
 gi|260683181|ref|YP_003214466.1| prophage lambdaba04, site-specific recombinase [Clostridium
           difficile CD196]
 gi|260686779|ref|YP_003217912.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium difficile R20291]
 gi|306519568|ref|ZP_07405915.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family protein [Clostridium difficile QCD-32g58]
 gi|260209344|emb|CBA62764.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium difficile CD196]
 gi|260212795|emb|CBE03954.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium difficile R20291]
          Length = 376

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 59/304 (19%), Positives = 118/304 (38%), Gaps = 49/304 (16%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
            T +SY  +  +       + + K+    ++ L+   ++ FI+K+  +     +L + L 
Sbjct: 83  NTQESYRINIEK-------HIKPKLGAYKVKALTPAILQNFINKKYKEDYSQNTL-QVLK 134

Query: 94  GI--KSFLKYLKKRKITTESNILNMRNLKKSNSLP----RALNEKQALTLVDNVLLHTSH 147
            I  +S    +   K   E+ +  +   K  +       + +  ++   +++        
Sbjct: 135 AILHRSLKSAVHPYKHIRENPMQYVSIPKTKSKTETNKVKTITLEEFNQILNIF------ 188

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK-------------- 193
                D+    +L + +  G+R  E ++L   NI  D  T+ ++                
Sbjct: 189 ---PQDSFQRIVLLIGFHTGMRRGEIIALKWDNIDLDNKTITVKHTLIKKPNGMFELGQP 245

Query: 194 --GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK------PLNPGVFQR 245
                 R +    ++ KA+ E+  L    + L      F             +N      
Sbjct: 246 KTESSCRTIFTGDTLIKALKEH-KLYQKKMKLKYGEFYFDSDWVCTKENGQQVNTHTLDT 304

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
            +RQ+R  + L      H+LRH+ AT LL NG +++ IQ+ LGH +LSTT   Y++V  K
Sbjct: 305 IVRQIR--VALNNDFHFHSLRHAHATLLLENGANIKDIQNRLGHSQLSTTMDTYSHVTDK 362

Query: 305 NGGD 308
              +
Sbjct: 363 MKNE 366


>gi|91791345|ref|YP_552295.1| phage integrase [Polaromonas sp. JS666]
 gi|91701226|gb|ABE47397.1| phage integrase [Polaromonas sp. JS666]
          Length = 527

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 53/334 (15%), Positives = 120/334 (35%), Gaps = 50/334 (14%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-- 80
             L      S+ T ++Y  +  + + +      ++  +  +  L+  ++  + S+ +   
Sbjct: 172 AFLRERTSRSRHTWRAYTKELERLVTWC-----QEQNLGPLSDLTRQDLLKYKSRMQKMQ 226

Query: 81  --------------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-- 124
                         + + ++S  RSL+ + S  +Y         +    +    ++ +  
Sbjct: 227 SGNKPLEGDTPAQMRPMAEKSQARSLAVVASLYRYWHNTGYLQGNPAAGLTGGSRAQAGF 286

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNS------AILYLLYGCGLRISEALSL-- 176
            P  +   + L   D  +  +   +  +   ++      AI +L    G R++E      
Sbjct: 287 APTRMVSSELLARCDAFIERSLQTSPPLQTADANVWRRCAIWHLFRFSGARLAELAWNPS 346

Query: 177 ----TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLF 230
                 ++      TL + GKG+KIR +PL       +L Y          +   Q+PL 
Sbjct: 347 KALPRVESDKVGAVTLTVVGKGNKIRQIPLPTICSHVLLSYRLARGLPELPDTLEQIPLI 406

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLG------------LPLSTTAHTLRHSFATHL-LSNG 277
            G +   L        ++ +   +             L  + + H LRH++A  L +   
Sbjct: 407 HGEKAGYLGARGLYNEVKAVLLAVAREIEQGDPQSGTLLRTVSPHWLRHAYARTLVVDKR 466

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             L + Q++LGH  + TT  Y   +  +  +++ 
Sbjct: 467 VPLPAAQALLGHASVQTTAAYAKTDLAHLREFVE 500


>gi|293115748|ref|ZP_06604584.1| transposase [Butyrivibrio crossotus DSM 2876]
 gi|292808521|gb|EFF67726.1| transposase [Butyrivibrio crossotus DSM 2876]
          Length = 360

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 130/336 (38%), Gaps = 44/336 (13%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF-ISKRRTQ 81
           + L+ + G+ + T Q Y    R          +E    +TIR +  ++ + F I  ++  
Sbjct: 28  RYLKTKTGVRQSTKQGYVTVQRLLA-------KEAFGKKTIRSVKTSDAKLFPIKLQQED 80

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLKKSNSLPR-ALNEKQALTLVD 139
                S+      +    +      I  ++     +  +  ++S+ R A+++ Q    + 
Sbjct: 81  GKSYSSIHTIRGVLHPAFQMAVDDDILVKNTFGFQLAGVLVNDSVTREAISKDQMRKFLK 140

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            V          +  +   ++Y+L+  G+RISE  SLT ++I  +  T+ I  +  +   
Sbjct: 141 FV------HDDVVYCKYYEVVYILFHTGMRISEFCSLTLKDIDLENRTVNIDHQLQRTSD 194

Query: 200 VPLLPSVRK--------------------AILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           +  +    K                     I +                LF    G PL 
Sbjct: 195 MWYIIETTKTDAGTRVLPITEDVAQMFQVIIEDRNAPKVEKSIDGYSGFLFYDDNGMPLV 254

Query: 240 PGVFQRYI-RQLRRYLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              +Q      + RY  +      + T H  RH++ +++  +G + +++Q ++GH  +S 
Sbjct: 255 AMHWQHRFNHMVGRYNDIYRVQMPNITPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISV 314

Query: 295 TQ-IYTNVNSKNGGDWM--MEIYDQTHPSITQKDKK 327
           T  +YT++   +  + +  ME + +    + QK++K
Sbjct: 315 TMNVYTHIGFDDAEEKLKRMEEFRKAQAEVEQKNEK 350


>gi|291453463|ref|ZP_06592853.1| phage integrase [Streptomyces albus J1074]
 gi|291356412|gb|EFE83314.1| phage integrase [Streptomyces albus J1074]
          Length = 383

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 62/320 (19%), Positives = 111/320 (34%), Gaps = 41/320 (12%)

Query: 11  SFELLKERQNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           S +L +    WL N ++  R LS  T   YE   R +L+ L       +  + +  L   
Sbjct: 71  SAKLSEWLPYWLDNVIKPRRKLS--TYDKYEAHARLYLVPL-------LGAKRLESLGVA 121

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++R FI +   +     + K S   ++S L    + ++ T +    +   +  N   +  
Sbjct: 122 DVRRFIVRLEKETTAA-TAKESHRVLRSALSSACREELITRNVAKLVEPPRTVNRELKPW 180

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              + L  +       +     +     A   L    GLR  E + L   ++  D   L 
Sbjct: 181 TLDETLDFL------AASRKDPL----YAAFVLAIAMGLRRGEIIGLRWSDLDLDNRVLY 230

Query: 190 IQG--------------KGDKIRIVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFR 231
           ++               K  + R VPL       +  +                   +F 
Sbjct: 231 VRQQTQRRRGVLYDDDPKSRRRRAVPLPALCIAPLRWHRMRQAAARVKAGEWQESGYVFT 290

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
              G+ + P    R   ++    GL +    H  RH  AT L + G   R +  ILGH +
Sbjct: 291 TRTGRQVEPRNVYRSFTRVAESAGLRV-IRLHDARHGTATLLTAAGVAPRVVMEILGHSQ 349

Query: 292 LSTTQ-IYTNVNSKNGGDWM 310
           +S T  +YT+V      + +
Sbjct: 350 ISITMDVYTHVVQDTQREAI 369


>gi|291457638|ref|ZP_06597028.1| phage integrase [Bifidobacterium breve DSM 20213]
 gi|291380691|gb|EFE88209.1| phage integrase [Bifidobacterium breve DSM 20213]
          Length = 376

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 99/274 (36%), Gaps = 32/274 (11%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97
           SY     +       +   K  ++ ++ +++ E++ ++S     K     + R+   +++
Sbjct: 84  SYIETLER---AWRVHVAPKWGMREVQSITHDEVQMWVSALAESK-SASVVLRAEGILRA 139

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
            L   K  K   ++    +   +K       L+  Q L L D                  
Sbjct: 140 LLAKAKADKCIHDNPCDGLELPRKRRKKHVYLSIDQLLALADASD------------WRR 187

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG--------------KGDKIRIVPLL 203
            I+  L  CGLR  E + L   ++  D+  + ++               K  + R V   
Sbjct: 188 PIVLTLGLCGLRWGELVGLQVGDVDLDRQRIHVRRSATEVNHQIVVDAPKTGEERTVIFP 247

Query: 204 PSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
             ++  + E  D       L  + +   +      P +   +  + ++      +  S T
Sbjct: 248 RMLQSCLEEACDGRRQSDLLFPDRRTGSYLRKTHGPCSTSSWFYWAKKRSLGDEIADSMT 307

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            H LRH+ A+ L+  G +++++Q  LGH   + T
Sbjct: 308 IHDLRHTCASLLVHAGANVKAVQRQLGHKSATMT 341


>gi|167752569|ref|ZP_02424696.1| hypothetical protein ALIPUT_00823 [Alistipes putredinis DSM 17216]
 gi|167659638|gb|EDS03768.1| hypothetical protein ALIPUT_00823 [Alistipes putredinis DSM 17216]
          Length = 409

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 106/295 (35%), Gaps = 34/295 (11%)

Query: 34  LTLQSYE------CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
            T+ +Y           +F+   + Y    I+I+ I  +  T+   ++  R   K G  +
Sbjct: 126 KTIATYRKYEVTRRHLAEFIR--SKYNVSDISIKEITPMFITDFELYL--RTACKCGYNT 181

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             + +   K  +   +   I       + + ++        L E +   ++   ++    
Sbjct: 182 TAKFMQFFKRIIIIARNNGILVGDPFASYK-IRLEKVDRGYLTEDEIKIILKKKMVSERL 240

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKGDKIRIVPLL 203
           E          +      CGL  S+  +L  +N       +   +  + K +    VPLL
Sbjct: 241 E------HVRDLFVFSCFCGLAYSDVANLRQENIQKSFDGNLWIITKRVKTNTDVNVPLL 294

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              +  + +Y            +  L  G     ++      Y++++    G+  + T H
Sbjct: 295 DIPKMILKKY------------KGKLPDGKILPVISNQKLNAYLKEIADICGIKKNLTFH 342

Query: 264 TLRHSF-ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
             RH+F  T  LS G  + ++  +LGH  + TTQIY  + +   G  M  +  + 
Sbjct: 343 LARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSKIGSDMQGLDKKF 397


>gi|150010080|ref|YP_001304823.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149938504|gb|ABR45201.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 402

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/293 (17%), Positives = 100/293 (34%), Gaps = 21/293 (7%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIG 84
            + +  S+ T + Y    +    F+  +   K +   + +L+   I  +    R +  + 
Sbjct: 122 RVGKDRSERTYRKYLTVRKYVAEFMKNHY--KRSDMGMNELTEEFIHDYCLYLRNEVGLA 179

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLVDNVLL 143
             S+      +K  +           +       N          L E +   +    L 
Sbjct: 180 QSSVWIYSIPLKHIVTSAHYHGKIPRNPFAQYHVNPDHKER--GFLTENEIKAMSTIELE 237

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
           + +       A    I       G+   +  +LT  NI++   +  I  K    R    +
Sbjct: 238 NANF------AIARDIFIFGCWTGISFVDIKNLTTDNIVELNGSRWIVSK----RQKTGV 287

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           P   K +     +   +        LF        +  +  R I+ + +  G+  + + H
Sbjct: 288 PFQIKLMDIPAQIIERNKPFRNGKNLFNIN-----SYDMVNRRIKTVAKMCGIEKNISFH 342

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             RHSFA   L+ G  + S+  ILGH  ++TTQIY  V +    + +    D+
Sbjct: 343 LSRHSFAVLALNYGMPIESVSKILGHTNITTTQIYAKVTNTKLENDISAFEDK 395


>gi|301162340|emb|CBW21885.1| putative transposase [Bacteroides fragilis 638R]
          Length = 409

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 106/295 (35%), Gaps = 34/295 (11%)

Query: 34  LTLQSYE------CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
            T+ +Y           +F+   + Y    I+I+ I  +  T+   ++  R   K G  +
Sbjct: 126 KTIATYRKYEVTRRHLAEFIQ--SKYNVSDISIKEISPMFITDFELYL--RTACKCGYNT 181

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             + +   K  +   +   I       + + ++        L E +   ++   ++    
Sbjct: 182 TAKFMQFFKRIIIIARNNGILVGDPFASYK-IRLEKVDRGYLTEDEIKIILKKKMVSERL 240

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKGDKIRIVPLL 203
           E          +      CGL  S+  +L  +N       +   +  + K +    VPLL
Sbjct: 241 E------HVRDLFVFSCFCGLAYSDVANLRQENIQKSFDGNLWIITKRVKTNTDVNVPLL 294

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              +  + +Y            +  L  G     ++      Y++++    G+  + T H
Sbjct: 295 DIPKMILKKY------------KGKLPDGKILPVISNQKLNAYLKEIADICGIKKNLTFH 342

Query: 264 TLRHSF-ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
             RH+F  T  LS G  + ++  +LGH  + TTQIY  + +   G  M  +  + 
Sbjct: 343 LARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSKIGSDMQGLDKKF 397


>gi|295841254|dbj|BAJ07028.1| integrase [uncultured bacterium]
          Length = 281

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 53/284 (18%), Positives = 97/284 (34%), Gaps = 60/284 (21%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           +  S  T ++Y   T++F++F      + I           EI  F+S     + +   +
Sbjct: 20  KNYSYSTEKAYVYWTKRFILFHNKRHPKTIGG--------PEIETFLSHLAVERNVSAST 71

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++   +    + +    +   S I+++R  K+   LP  L   +   L+         
Sbjct: 72  QNQAFCALLFLYRDVL--GVELNSPIVSVRA-KRPKRLPTVLTRPEVKLLI--------- 119

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLRIQGKGDKIRIVPLLPSV 206
               +  +   +  LLYG GLR+ E + L  ++I   Q   +  +GKG K R+  L  + 
Sbjct: 120 --SVMSGKYRLMAKLLYGSGLRLMERIRLRIKDIDFGQHQVIVCEGKGLKDRVTILPDAT 177

Query: 207 RKAILEYYDL-------------------------CPFDLNLNIQLPLFRGI-------- 233
              +  +                             P          +F           
Sbjct: 178 VPNLHRHLRHVRLRHEDDLANGIAGVSLPYALAVKYPRAQFERKWQYVFPSKNIAKDPRS 237

Query: 234 ---RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
              +    +P   Q  +R+  +   +    T H LRHSFATHLL
Sbjct: 238 GELKRHHADPSGLQNAVRRAAKTAQITKHVTPHALRHSFATHLL 281


>gi|295087488|emb|CBK69011.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 409

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 106/295 (35%), Gaps = 34/295 (11%)

Query: 34  LTLQSYE------CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
            T+ +Y           +F+   + Y    I+I+ I  +  T+   ++  R   K G  +
Sbjct: 126 KTIATYRKYEVTRRHLAEFIQ--SKYNVSDISIKEISPMFITDFELYL--RTACKCGYNT 181

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             + +   K  +   +   I       + + ++        L E +   ++   ++    
Sbjct: 182 TAKFMQFFKRIIIIARNNGILVGDPFASYK-IRLEKVDRGYLTEDEIKIILKKKMVSERL 240

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKGDKIRIVPLL 203
           E          +      CGL  S+  +L  +N       +   +  + K +    VPLL
Sbjct: 241 E------HVRDLFVFSCFCGLAYSDVANLRQENIQKSFDGNLWIITKRQKTNTDVNVPLL 294

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              +  + +Y            +  L  G     ++      Y++++    G+  + T H
Sbjct: 295 DIPKMILKKY------------KGKLPDGKILPVISNQKLNAYLKEIADICGIKKNLTFH 342

Query: 264 TLRHSF-ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
             RH+F  T  LS G  + ++  +LGH  + TTQIY  + +   G  M  +  + 
Sbjct: 343 LARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSKIGSDMQGLDKKF 397


>gi|260462340|ref|ZP_05810548.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
 gi|259031834|gb|EEW33102.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
          Length = 367

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 87/249 (34%), Gaps = 24/249 (9%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           +       + +   +   R +   + ++ R ++ +   L+   K            R  K
Sbjct: 75  ERFSAFDQSTLDNLVGTLRQRGNSNATINRKMAALSKLLRKAYKMGDIHSLP--EFRRQK 132

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +     R L   +   L   +   +             +   L   G R+ EAL L   +
Sbjct: 133 ERAGRIRFLERDEEARLFAAIKSRSEDA--------YRLSVFLVDSGCRLGEALGLIWND 184

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I + + +  I  K  + R +P+   V++ I       P       + P          + 
Sbjct: 185 IQEHRVSFWI-TKSGRSRTIPMTERVKEVIK-----LPPAEGRRPKGPF------TKFSQ 232

Query: 241 GVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             F+    + +  +GL        H LRH+ A+ L+  G D+R +Q  LGH  LS T  Y
Sbjct: 233 AQFRAIWNEAKAEVGLGADDQVVPHILRHTCASRLVQGGIDIRRVQMWLGHQTLSMTMRY 292

Query: 299 TNVNSKNGG 307
            ++ + +  
Sbjct: 293 AHLATNDLD 301


>gi|228968233|ref|ZP_04129231.1| Integrase (Phage-related protein) [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228791406|gb|EEM39010.1| Integrase (Phage-related protein) [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 383

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 55/297 (18%), Positives = 114/297 (38%), Gaps = 33/297 (11%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           +  L  +    E  I ++ ++ L+    + F+++  ++K    ++K+  + +K+ +KY  
Sbjct: 88  KNLLQSVKLVEEHFIGVR-MKDLNRVLYQNFLNEL-SKKRAKMTVKKKHNCVKACIKYAI 145

Query: 104 KRKITTESNILNM----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           +  I              N  KS  L + +N+++   +VD +  + + +       +  I
Sbjct: 146 EDGILHRDPTYKAIIHGENETKSEEL-KFINQEEMKNIVDELRANLTPQ-----YISRYI 199

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP--------------- 204
           +      G R  E + +T   I  ++ T+ I    D                        
Sbjct: 200 ILFAIATGARFGEIMGMTWDCIDLEERTITINKTWDYRDKNDFGNTKNYQSVRTITIDQE 259

Query: 205 --SVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
             S+ K +  Y         L     L F   + + +      + ++++     +    T
Sbjct: 260 TVSMLKDLQTYQKEHALKTGLRNTKNLCFINNQMEIITNNAVNKVLKKICARCNV-KPIT 318

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQT 317
            H+LRH+ A+ LL NG +++ I   LGH  +  T Q Y++V  +        I DQT
Sbjct: 319 CHSLRHTHASILLYNGVNIKYISRRLGHKDIVITLQTYSHVLDEMEQKE-SRIVDQT 374


>gi|255692131|ref|ZP_05415806.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|260622150|gb|EEX45021.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 409

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 106/295 (35%), Gaps = 34/295 (11%)

Query: 34  LTLQSYE------CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
            T+ +Y           +F+   + Y    I+I+ I  +  T+   ++  R   K G  +
Sbjct: 126 KTIATYRKYEVTRRHLAEFIQ--SKYNVSDISIKEISPMFITDFELYL--RTACKCGYNT 181

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             + +   K  +   +   I       + + ++        L E +   ++   ++    
Sbjct: 182 TAKFMQFFKRIIIIARNNGILVGDPFASYK-IRLEKVDRGYLTEDEIKIILKKKMVSERL 240

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKGDKIRIVPLL 203
           E          +      CGL  S+  +L  +N       +   +  + K +    VPLL
Sbjct: 241 E------HVRDLFVFSCFCGLAYSDVANLRQENIQKSFDGNLWIITKRVKTNTDVNVPLL 294

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              +  + +Y            +  L  G     ++      Y++++    G+  + T H
Sbjct: 295 DIPKMILKKY------------KGKLPDGKILPVISNQKLNAYLKEIADICGIKKNLTFH 342

Query: 264 TLRHSF-ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
             RH+F  T  LS G  + ++  +LGH  + TTQIY  + +   G  M  +  + 
Sbjct: 343 LARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSKIGSDMQGLDKKF 397


>gi|149920807|ref|ZP_01909270.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149818325|gb|EDM77777.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 421

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 96/268 (35%), Gaps = 40/268 (14%)

Query: 63  IRQLSYTEIRAF-------ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           + +++  E  A+       ISKR ++ +   S+   L  ++  LK   +  + T+   + 
Sbjct: 122 LSEITAREADAYVCAKSTTISKRTSKPLSSSSIANHLGLLRRMLKVACRWDMLTKVPEIT 181

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +   KK   +   L+ +++  L+              D     ++ L    G+R+ E   
Sbjct: 182 I--PKKGE-VDNYLSRRESRRLL-----------AKADPLFRDMIALGLRTGMRLGELQE 227

Query: 176 LTPQNIMDDQSTLRIQG-----------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
           L   +I    + +R+             KGDK R V +       + +       D  + 
Sbjct: 228 LRVGDINLGAARIRVTRQRTKEGTIKKPKGDKTRTVQVPHDAVTMLRKRVAGLERDELVF 287

Query: 225 IQLPLFRGIRGK--------PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
            +   ++               +       +++      +      HTLRH+FATH ++ 
Sbjct: 288 SKPAGYQAPHRTEAPAEGGEHWSHKEVFAAVQRATEAAKIGRKVGVHTLRHTFATHAVAA 347

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           G  L  +   LGH  + TT  Y +   +
Sbjct: 348 GVPLSVVSRQLGHADIRTTMRYAHHAPE 375


>gi|260855535|ref|YP_003229426.1| putative integrase [Escherichia coli O26:H11 str. 11368]
 gi|312966869|ref|ZP_07781087.1| integrase [Escherichia coli 2362-75]
 gi|257754184|dbj|BAI25686.1| putative integrase [Escherichia coli O26:H11 str. 11368]
 gi|312288333|gb|EFR16235.1| integrase [Escherichia coli 2362-75]
          Length = 311

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 103/257 (40%), Gaps = 29/257 (11%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNIL 114
           E +    + +L+ T +      R  Q I   ++ R +  + +    L        ++ + 
Sbjct: 77  EAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAMFTALISSGHFLNDNPVQ 136

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            ++ +K +      L++ + + L+D  L     E           + +L   G R  E  
Sbjct: 137 GLKGMKVNEREMGYLSKSECVQLLDA-LAENPDE--------RLAVEILLSTGARWGEVA 187

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +L  + ++  + T   + K  K R VP+  S+ + I                  +F    
Sbjct: 188 ALEQRRVLHCRITFS-KTKNSKNRTVPISESLFEKI-----------KKRGGKLVFPT-- 233

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              L+  + +  I+ +     +P     H LRH+FA+H + NGG++ ++Q ILGH ++ T
Sbjct: 234 ---LDYPLVRDVIKTVA--PDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQT 288

Query: 295 TQIYTNVNSKNGGDWMM 311
           T IY ++      D + 
Sbjct: 289 TMIYAHLAPDYLQDAVR 305


>gi|238023353|ref|YP_002907586.1| Phage integrase family protein [Burkholderia glumae BGR1]
 gi|237880406|gb|ACR32736.1| Phage integrase family protein [Burkholderia glumae BGR1]
          Length = 563

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 68/331 (20%), Positives = 123/331 (37%), Gaps = 39/331 (11%)

Query: 16  KERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           KE +  L    +ERG  LS LT      D   +  FL   T  +  +   R     E R 
Sbjct: 241 KEAERLLLWSIVERGRALSSLT----TDDAIAYRGFLRRPTPRERWVGPSRPRHSIEWRP 296

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS----LPRAL 129
           F     T  +  RS   +L+ + +  ++L +++    +    ++    +      + R  
Sbjct: 297 F-----TGPLSARSAAYALNILSALFRWLVEQRYVLANPFACVKIKSHAQRAGLDVSRGF 351

Query: 130 NEKQ--ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS- 186
           +E +   +  + + L  +   +     R   +L   Y  GLR SE +  T  +I  D+  
Sbjct: 352 SESEWVLIRTLADGLEWSYGWSAPAAQRLRFLLDFGYATGLRASELVGATLGDIRRDEHG 411

Query: 187 --TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR----------GIR 234
              L + GKG K+  V L    R A+ +Y       +   +  P+            GI 
Sbjct: 412 DHWLHVLGKGGKLGKVTLPTLARTALDQYLVQRGQPVTPTLWNPVTPLVASLEEDGAGIE 471

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTT--------AHTLRHSFATHLLSNGGDLRSIQSI 286
            + L   V +R+   +   +      T         H +RH+ A+H L+ G +L  ++  
Sbjct: 472 PRRL-WRVLRRFFALVADAIQDERPATAEKLRRASPHWMRHTHASHALARGAELIMVRDN 530

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           L H  +STT  Y + +         + +   
Sbjct: 531 LRHASISTTSTYLHSDEVQRARQFDQAFGAH 561


>gi|210630405|ref|ZP_03296440.1| hypothetical protein COLSTE_00324 [Collinsella stercoris DSM 13279]
 gi|210160487|gb|EEA91458.1| hypothetical protein COLSTE_00324 [Collinsella stercoris DSM 13279]
          Length = 153

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 4/149 (2%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           ++ LL   G+R+ E + L   ++        + GKG+K R V      +     Y +   
Sbjct: 1   MVDLLASTGVRVGEFIRLDIDDVDIQGRECVVTGKGNKQRPVYFDARTKLHPTAYLESR- 59

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
              + N  L +    R + L+    ++ ++ L     +      HT R + ATH +  G 
Sbjct: 60  --KDSNPALFVSLNGRTQRLSVCTIEKRMKALGEKAQIGR-VHPHTFRRTLATHAIDKGM 116

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +  +Q +LGH ++ TT  Y  VN  N  
Sbjct: 117 PIEQVQKLLGHSKIETTMHYAMVNQSNVK 145


>gi|206577666|ref|YP_002236692.1| type 1 fimbriae regulatory protein FimB [Klebsiella pneumoniae 342]
 gi|290511258|ref|ZP_06550627.1| tyrosine recombinase [Klebsiella sp. 1_1_55]
 gi|206566724|gb|ACI08500.1| type 1 fimbriae regulatory protein FimB [Klebsiella pneumoniae 342]
 gi|289776251|gb|EFD84250.1| tyrosine recombinase [Klebsiella sp. 1_1_55]
          Length = 209

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 67/173 (38%), Gaps = 8/173 (4%)

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L + +  +L+       + +T    ARN  +  L +  GLR SE   L   +I      
Sbjct: 20  FLTQNEIESLL------KAADTGLYAARNYCLTLLCFIHGLRASEICRLRISDIDLAARC 73

Query: 188 LRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           + I   K       PLL     A+  +  +         +  LF   +G PL+   F + 
Sbjct: 74  VYIHRLKKGFSTTHPLLEKEIHALKRWLAIRSSWPQAASE-WLFLSRKGNPLSRQQFYQI 132

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           I       GLPL    H LRHS    L + G D R IQ  LGH  +  T  YT
Sbjct: 133 IASSGDLAGLPLEIHPHMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYT 185


>gi|157157376|ref|YP_001464358.1| phage integrase family protein [Escherichia coli E24377A]
 gi|157079406|gb|ABV19114.1| phage integrase family protein [Escherichia coli E24377A]
          Length = 352

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 62/341 (18%), Positives = 127/341 (37%), Gaps = 47/341 (13%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M      ++   ELL E   +       R L   T  SY    R F+ F+          
Sbjct: 1   MGSKKAGKLTWDELLDEY--FFS-----RNLRPDTEWSYRKVVRGFVDFMGEGV------ 47

Query: 61  QTIRQLSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT--TESNILNMR 117
                ++  +I+ +  +  +TQ +   +    ++ +++   +  K+ +   TE+ +    
Sbjct: 48  -FPADVTQRDIQRWRRQVLKTQSLSTYTWNNKVAHLRAIFGFGIKKGLLPQTENPLCEAS 106

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS------------AILYLLYG 165
             K++    + LN+ Q + +   V     +ET+     +              +L +L  
Sbjct: 107 VAKEAKK-KKTLNKDQMIQVYLVVQKFAEYETQQRVPCDRRRNALYPARYWLTVLDVLRY 165

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV--RKAILEYYDLCPFDLNL 223
            G+R ++   +  +++   +  + +Q +G K      +P V   KA LE        L  
Sbjct: 166 TGMRFNQLQHIRLKDVRPGEGVIELQLEGSKTHREWCVPIVEPLKAPLELLLSRARRLGA 225

Query: 224 NIQLPLFRGIR------------GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
                LF   R                     + + R+L R  G     +AH  RH+ AT
Sbjct: 226 GPDDFLFDVCRFTDCIEPDDYVYCPARAHQAVKGFFRRLSRECG--FLVSAHRFRHTLAT 283

Query: 272 HLLSN-GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            L+ +   ++  ++S+LGH  ++TT  Y +V+  +    + 
Sbjct: 284 ILMESPERNMHLVKSMLGHQSIATTMEYVDVSVASAAGTLE 324


>gi|307275392|ref|ZP_07556535.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX2134]
 gi|306508026|gb|EFM77153.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX2134]
          Length = 384

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 56/328 (17%), Positives = 113/328 (34%), Gaps = 42/328 (12%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKIT 59
           + N +P   +    +    WL+N        K T++  SY        I    +      
Sbjct: 57  QKNGIPSSTNITFQEVAFMWLENY-------KNTVKESSYSRT----EIIFRKHILPSFG 105

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
              I ++S    +  ++   ++    +     ++ +    K+     +T ++ ++N+   
Sbjct: 106 KIEISKISTAYCQKIVNTWHSKG-SSKQYPLFINYMNQVFKFAINIGVTNQNPVINVIVP 164

Query: 120 K-----KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           K      S    +   + Q    + ++      E+ +I  R+  +  LL   G RI E L
Sbjct: 165 KNQDIITSEKKIKFYTKDQLQIFLKSIEQS---ESTYITIRDYTLFRLLAFSGCRIGELL 221

Query: 175 SLTPQNIMDDQSTLRIQGK---------------GDKIRIVPLLPSVRKAILEY-YDLCP 218
           +LT  ++      L+I                      R + L       + ++  +   
Sbjct: 222 ALTWDDLNIKTGELQINKTIAKSDHYYVSNTPKTKKSNRTLILDAKTITILKKWKLEQKK 281

Query: 219 FDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
           + L L    P  +F     +              R+   LP +   H  RH+ A+ L   
Sbjct: 282 YLLKLGYTQPSHIFTNEENEFTINQAITDRYNIYRKKANLP-NIGLHGFRHTHASLLYYA 340

Query: 277 GGDLRSIQSILGHFRLSTT-QIYTNVNS 303
           G D + +Q  LGH  + TT   YT++ +
Sbjct: 341 GADHKEVQERLGHANIKTTLDTYTHLTN 368


>gi|265763064|ref|ZP_06091632.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
 gi|263255672|gb|EEZ27018.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
          Length = 380

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 102/278 (36%), Gaps = 33/278 (11%)

Query: 46  FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT---------QKIGDRSLKRSLSGIK 96
            +  L  Y +  I    +RQ+    I  F+   +T         + I   +         
Sbjct: 116 LIYHLQHYDKMGIR---LRQVDKKYILGFVEYLKTATQKHCKSVKNISANTQVHYYKVFH 172

Query: 97  SFLKYLKKRKITTESNILNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
             L      +I T + +  ++N    K+  +    L   +   L          +T + +
Sbjct: 173 HCLNSAVIDEIITSNPMDKIKNEEKPKRRRTERAFLTIDELKIL---------SQTDFHN 223

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI-LE 212
           A           CGLR S+ ++LT  N+         +GK  K+ +       ++ + L 
Sbjct: 224 ATLKKAFLFSCFCGLRHSDIVALTWGNLK--------KGKVGKMELHMTQQKTQEILSLP 275

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                   L +  ++P    +    ++ G     + +     G+    T H+ RH+ AT 
Sbjct: 276 LSKEALKQLPVRGKVPDTEKVFKGLISLGRTNEILPKWAAKAGIQKHITFHSARHTHATM 335

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           +++ G DL ++  +LGH  + TTQIY  +  ++    +
Sbjct: 336 MITLGADLYTVSKLLGHTNIQTTQIYAKIVDESKEKAI 373


>gi|159904824|ref|YP_001548486.1| integrase family protein [Methanococcus maripaludis C6]
 gi|159886317|gb|ABX01254.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 323

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 70/334 (20%), Positives = 132/334 (39%), Gaps = 32/334 (9%)

Query: 1   MEGNNL-----PEIVSFELLKERQNWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAF 52
           M+ N +     PE       KE   W+      R   G+ K T+ +   D  +  +F+ F
Sbjct: 1   MDINKMLKLKKPEPEPITETKEMNKWVSEFIDAREFDGIKKTTITN---DVTRLRVFIDF 57

Query: 53  YTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-E 110
            T++    + + QL   +   F +   + + I   + KR    +K F K  +       +
Sbjct: 58  STQKLN--KELDQLQNVDFIKFFNYLDKEKGIKRNTQKRYFDLLKVFYKINRLSNFDEFK 115

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
            +    +  K+         +++ LT + +++     +TK    R+  IL +L+  G R 
Sbjct: 116 EDSEERKRFKRCEVAHYDFIDRETLTKIIDMIAEGRSQTK---VRDVIILRMLWDTGCRA 172

Query: 171 SEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
           SE ++LT  ++  D   ++++  KG   R V         +  Y       +    +  +
Sbjct: 173 SEVVNLTYFDVDMDTGKIKVRNTKGKVERTVGCSKDTLNLLKYY---SNHQIYKTPKDHI 229

Query: 230 FRGIRGKP-----LNPGVFQRYIRQLRRYLGLP--LSTTAHTLRHSFATHLLSNGGDLRS 282
           F+  +G+          VF++ +R+L+    +P       H+LRH  A  LL  G  +  
Sbjct: 230 FKNRKGEAKIEVNWISEVFRKAVRKLKESGDIPNNKKLVVHSLRHGRAVDLLDKGFPIDI 289

Query: 283 IQSILGHFRLSTTQIYTNV---NSKNGGDWMMEI 313
           ++  LGH  L TT  Y +      K   D M  +
Sbjct: 290 VKEYLGHSSLETTLFYAHAKEREKKMLDDIMKSL 323


>gi|333030412|ref|ZP_08458473.1| integrase family protein [Bacteroides coprosuis DSM 18011]
 gi|332741009|gb|EGJ71491.1| integrase family protein [Bacteroides coprosuis DSM 18011]
          Length = 406

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 113/298 (37%), Gaps = 29/298 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           S  TLQ Y    +    F+   Y    + +++I  +   +   ++     +++   ++ +
Sbjct: 128 SAATLQKYNVTRKHVANFIKKKYRVSDMAVKSINDMFLRDFEVYL--LTQERVSHNTMAK 185

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
            +   K  +   +   +       N +  LKK +     L E++   ++           
Sbjct: 186 FMQFFKRIIILARNNGLIVHDPFANYKIQLKKVDR--GYLTEQEMNKIIQKKF----PTK 239

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKGDKIRIVPLLPS 205
           +    R+  I       GL   +   LT  +       +   +  + K      VPL+  
Sbjct: 240 RLEQVRDIFIFSCF--TGLAYIDVKELTKNHIRISFDGNIWIMTKRHKTKVNVNVPLMDI 297

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            +K + +Y      +L  +  LP+        L+      Y++++    G+  + T H  
Sbjct: 298 PKKILQKY----EGELPDDKILPV--------LSNQKMNAYLKEIADVCGINKNLTFHLA 345

Query: 266 RHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           RH+FAT + L+ G  + ++  +LGH  + TTQIY  + ++     M  +  + + S  
Sbjct: 346 RHTFATTVTLAKGIPIETVSKMLGHTNIQTTQIYARITNEKISKDMRGLSAKFNDSEK 403


>gi|323187008|gb|EFZ72325.1| integrase [Escherichia coli RN587/1]
          Length = 312

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 103/257 (40%), Gaps = 29/257 (11%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNIL 114
           E +    + +L+ T +      R  Q I   ++ R +  + +    L        ++ + 
Sbjct: 77  EAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAMFTALISSGHFLNDNPVQ 136

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            ++ +K +      L++ + + L+D  L     E           + +L   G R  E  
Sbjct: 137 GLKGMKVNEREMGYLSKSECVQLLDA-LAENPDE--------RLAVEILLSTGARWGEVA 187

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +L  + ++  + T   + K  K R VP+  ++ + I                  +F    
Sbjct: 188 ALEQRRVLHCRITFS-KTKNSKNRTVPISENLFEKI-----------KKRGGKLVFPT-- 233

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              L+  + +  I+ +     +P     H LRH+FA+H + NGG++ ++Q ILGH ++ T
Sbjct: 234 ---LDYPLVRDVIKTVA--PDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQT 288

Query: 295 TQIYTNVNSKNGGDWMM 311
           T IY ++      D + 
Sbjct: 289 TMIYAHLAPDYLQDAVR 305


>gi|300854665|ref|YP_003779649.1| putative integrase/recombinase [Clostridium ljungdahlii DSM 13528]
 gi|300434780|gb|ADK14547.1| putative integrase/recombinase [Clostridium ljungdahlii DSM 13528]
          Length = 199

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 85/201 (42%), Gaps = 10/201 (4%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           +  N   +   +++  +L + ++    +       R+ AI  + Y CGLR SE   +  +
Sbjct: 3   RTGNKKIKYFTQEETKSLFNAII----NLDNIHAVRDLAIFRVAYRCGLRASEIALIKLE 58

Query: 180 NIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           +    +  L  +  KG     + L    + A+ +Y        N  +   LF+  + +P+
Sbjct: 59  DYNASKGELYCKRLKGSCNNTIRLDKKTKDALDKYIHESNLSSNSEV---LFKSQKNRPI 115

Query: 239 NPGVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           +       +++   Y  +   +    H L+H+ A HL  +  D++ +Q  LGH  ++ T+
Sbjct: 116 SRQTLDYLMKKYCSYSNIHDKSKYHFHALKHTTAVHLAESDMDIKELQWWLGHRSVTNTE 175

Query: 297 IYTNVNSKNGGDWMMEIYDQT 317
           IY    +K       ++ +++
Sbjct: 176 IYFQFTTKQQEKMYSKLEEKS 196


>gi|282892593|ref|ZP_06300866.1| hypothetical protein pah_c272o032 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497717|gb|EFB40086.1| hypothetical protein pah_c272o032 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 369

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 102/276 (36%), Gaps = 19/276 (6%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           ++ +     +   +  Y   KI+   I Q    E+   ++ ++T++    ++ R L+ + 
Sbjct: 89  RNMKRHLDWWRNKIGKYGLTKISSDLIAQC-RQELAEGVTSKKTKR-SHATVNRYLATLS 146

Query: 97  SFLKYLKKR-KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
           +   Y        T++    +    +S    R + E +   L +      +         
Sbjct: 147 TVFTYGINECGWITDNPCRRVSKFTESKGRDRIVAENEFTRLFEECKNSRNEHLLP---- 202

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY 214
              ++ L    G+R  E L LT   I  D+ T+ ++  K  K R V ++    + +  +Y
Sbjct: 203 ---VVVLAVTTGMRRGEILGLTWDCINLDRQTIILKETKNGKQRTVSIVGEALELLRSHY 259

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                +        +F   +         ++   +  +  G+  +   H LRH+F T+  
Sbjct: 260 QKRNPN-----TPYVFPAKK--RFGKICIRKAWDEALKRAGIQ-NLRIHDLRHTFCTYAS 311

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
             G  +  + + +GH  L     YT++N K     +
Sbjct: 312 ETGASILELAAAMGHQTLQMVNRYTHMNQKKITHQL 347


>gi|325262749|ref|ZP_08129485.1| putative integrase/recombinase, phage integrase family [Clostridium
           sp. D5]
 gi|324031843|gb|EGB93122.1| putative integrase/recombinase, phage integrase family [Clostridium
           sp. D5]
          Length = 286

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 61/302 (20%), Positives = 112/302 (37%), Gaps = 34/302 (11%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E L + Q +L     ER  ++ T+  Y  D R F  +L  + E          +    I 
Sbjct: 14  EALSDFQKYL----YERENARATISKYMTDIRTFYKYLDGHYE----------IDKKCIV 59

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           ++       K    S+   L  +  FL +    K         ++ LK    L   + E 
Sbjct: 60  SYKEWLYP-KYEATSINSMLVALNQFLDFFGYGKW-------KVKRLKVQKQL--FIPEA 109

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + +T  +   L  +  ++  + + +  +  L   G R+SE +  T +     + T+ I  
Sbjct: 110 KEMTKQEYKRLLEAARSR-QNYQLAMSIETLAATGARVSELVFFTVE--RVKKGTIAISN 166

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG   R + +   ++  +L Y        N   Q  +F    G+P +     R ++ L +
Sbjct: 167 KGKH-RTILISDVLKNKLLYY-----AAKNGITQGCIFITRNGRPKDRSNLWREMKALWK 220

Query: 253 YLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              +       H LRH FA        D+  +  +LGH  +  T+IYT    +N    + 
Sbjct: 221 ISNVQEQKIFPHNLRHLFARSYYKLTNDIAGLADLLGHSNMDVTRIYTANTEQNYRKQIQ 280

Query: 312 EI 313
            +
Sbjct: 281 RL 282


>gi|319935664|ref|ZP_08010095.1| hypothetical protein HMPREF9488_00926 [Coprobacillus sp. 29_1]
 gi|319809322|gb|EFW05757.1| hypothetical protein HMPREF9488_00926 [Coprobacillus sp. 29_1]
          Length = 356

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/303 (17%), Positives = 117/303 (38%), Gaps = 41/303 (13%)

Query: 21  WLQNLEIERGLSKLTLQS--YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++++++E  L + T+ S  Y               +E+     I  ++   +R +  + 
Sbjct: 10  YIESVQLE--LKRTTIDSIEYRY---------KNRLDERFGNLDIESITIDMVREYQKEM 58

Query: 79  RTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             Q  +    + R +  ++  L     R +  E+ ++ ++ +K    +    ++KQ +  
Sbjct: 59  LYQDNLSAEYINRIIGIMRQILDCGVTRNLVKENVLVKIKKVKDQYRI----DKKQVIWD 114

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI------- 190
           +D      + ++   D  +  +  +LY  GLR  E LSL   NI  ++  + +       
Sbjct: 115 LDVFR---TFDSYIADDMDKLLFNMLYFLGLRKGELLSLKWSNINFEKKIVNVISTAVQI 171

Query: 191 ---------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
                          IR + +  ++ + +  YY       ++   L +F   +   ++  
Sbjct: 172 VGKGQIVTTPKTNHSIRGICMNDTLFEMLSNYYFKMKLQYDVVNHLYIFGSNKM--ISFS 229

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTN 300
              R + +  +  G+      H  RHS AT L S   D++SI   LGH  +  T   Y +
Sbjct: 230 ALDRKLAKYLKLSGVEK-INLHGFRHSHATMLASLTTDIKSISDRLGHESVDVTLNEYIH 288

Query: 301 VNS 303
            N 
Sbjct: 289 SND 291


>gi|291525641|emb|CBK91228.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 399

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/289 (16%), Positives = 110/289 (38%), Gaps = 33/289 (11%)

Query: 55  EEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI 113
           ++    + I ++  ++ +A++ K  R    G  S+      ++   +  ++  +  ++  
Sbjct: 115 KDDFGKKRIDKVKLSDAKAWLIKLQRVDGKGYSSIHTIRGVLRPAFQMAEEDDLIRKNPF 174

Query: 114 -LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
              + N+  ++S+ R    +      +   L    E         AI  +L+  GLRISE
Sbjct: 175 GFELVNVIVNDSVRR----EAVTRKQEREFLRFIKEDAHFCKYYDAIF-ILFNTGLRISE 229

Query: 173 ALSLTPQNIMDDQSTLRIQG----------------KGDKIRIVPLLPSV----RKAILE 212
              LT  ++      +R+                       R VP+   V    ++ + +
Sbjct: 230 FCGLTKSDLDFKNKRIRVNHQLQRTSQMQYIIEKPKTESGERYVPMSDEVMACFKRILKD 289

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG-LPL----STTAHTLRH 267
             +     +   +   LF      P+    +++Y + +R     +        T H  RH
Sbjct: 290 RVNPKVEPMVDGMTGFLFLDKNDMPMVALHWEKYFQHIREKYNSIYKVQMPPITPHVCRH 349

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYD 315
           +F +++  +G + + +Q I+GH  +S T   YT+V  ++  +   +  +
Sbjct: 350 TFCSNMAKSGMNPKMLQYIMGHSDISVTMNTYTHVKFQDAQEDFQKAIN 398


>gi|282765828|gb|ADA84951.1| phage integrase family site-specific recombinase [Bacillus phage
           11143]
          Length = 322

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 63/312 (20%), Positives = 118/312 (37%), Gaps = 22/312 (7%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           VS E     +++L   + + G +  TLQ Y  D +  L  +  + E K     +  L+  
Sbjct: 17  VSQENKNLVKDFLIEKKAQ-GKAASTLQQYHWDLQIILFLIHEHFENK----NLIDLTRK 71

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT--TESNILNMRN-LKKSNSLP 126
           +IR      +   + +  +   +S ++S L++           +    +R   K      
Sbjct: 72  DIRNLSITFQDMGMSNARVNGLMSALRSALEFCADDDDYNYEFNVGSRVRGLPKNPIREI 131

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             + E Q   L+D +L              +  L L Y    R +E   +  + + +   
Sbjct: 132 TFITEDQINWLIDELLEQEK-------YMLATYLALSYYSAARKNEVYQVRKEGLTEQYY 184

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           T  ++GK  K   +   P V+K I  Y +    D   ++ + +++    K LN  VF  +
Sbjct: 185 TNVVRGKRGKKFRLYYNPRVQKCIRLYINQRGKDAIPDLFVRVYKNGERKTLNKSVFNYW 244

Query: 247 IRQLRRYL----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +   + L    G       H  RHS   +L   G  L  ++S+  H  +STT+ Y    
Sbjct: 245 CKIFAKMLYEKEGKEFKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTESYLK-- 302

Query: 303 SKNGGDWMMEIY 314
                + + EI+
Sbjct: 303 -DRSEEDIAEIF 313


>gi|260450873|gb|ACX41295.1| integrase family protein [Escherichia coli DH1]
 gi|323176201|gb|EFZ61793.1| phage integrase family protein [Escherichia coli 1180]
          Length = 183

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/148 (29%), Positives = 62/148 (41%), Gaps = 1/148 (0%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAIL 211
            AR+  ++ L Y  G+RISE L L  Q++  ++  + I+  K     + PL    R+A+ 
Sbjct: 10  GARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVE 69

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
            +          +    +F   RG  L+     R IR      G    T  H LRH+   
Sbjct: 70  RWTQERANWKGADRTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGY 129

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            L   G D R IQ  LGH  +  T  YT
Sbjct: 130 ELAERGADTRLIQDYLGHRNIRHTVRYT 157


>gi|255016381|ref|ZP_05288507.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 387

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 107/291 (36%), Gaps = 27/291 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K TL  Y    +    FL   Y  + I ++ +     ++   F+  R  +     ++  
Sbjct: 106 AKGTLLKYRTVYKHMQEFLDIRYHVKDIALKELTPAFISDFEMFL--RTDKHCCTNTVWL 163

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +  +++ +      +  T         +KK  +    L + +   L++  L +   E  
Sbjct: 164 YVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKDEIRLLMEGKLKNAKQE-- 220

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRI-QGKGDKIRIVPLLPSV 206
                   +       GL  ++  +LT +N     D+   + I + K   +  + LL   
Sbjct: 221 ----LYRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRQKTGVVSNIRLLDIA 276

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            + I +Y  LC           +F          G     IR + +  G+    T H  R
Sbjct: 277 NRIIGKYRGLC-------GDGRIFPVPHYNTCLAG-----IRAVAKRCGITKHITWHQSR 324

Query: 267 HSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           H+ AT   LSNG  + ++ S+LGH  + TTQIY  +  +     M  +  +
Sbjct: 325 HTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMENLAAR 375


>gi|229073696|ref|ZP_04206809.1| DNA integration/recombination/invertion protein [Bacillus cereus
           F65185]
 gi|228709405|gb|EEL61466.1| DNA integration/recombination/invertion protein [Bacillus cereus
           F65185]
          Length = 369

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 63/325 (19%), Positives = 115/325 (35%), Gaps = 43/325 (13%)

Query: 8   EIVSFELLKERQNWLQ--NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           E     L +   +WL+  ++ IER     T   Y         F+  +    I + T+ +
Sbjct: 59  EPSKVTLKEYLNHWLEIKSMSIERS----TFVGYR-------AFINQHVIPSIGMVTLHK 107

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           L+   I+        + I + S+      +KS L    K+ I + +        KK  + 
Sbjct: 108 LNVMHIQKCYKTAIDKGIANNSILLMHRILKSALNLAVKQNIISRNPAAFAEIPKKERTS 167

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
            +   E +        LLH+      I         L    G+R+ E L L  Q+I  ++
Sbjct: 168 IQTWTEDEVKKF----LLHSQESRYHIGY------LLAITTGMRMGEVLGLRWQDIDFEK 217

Query: 186 STLRIQGKGDKI-------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL--- 229
            T+ I                    R +P+     +++  +  L   +        L   
Sbjct: 218 HTVTINQTSGHDNKIKKTAKTNSSKRTIPVPKETIESLKRHKILINKEKLRFGSAYLDQD 277

Query: 230 --FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                  GK +    F++   ++   +G+      H LRH+ AT LL  G + + I   L
Sbjct: 278 LINCNEFGKIIKRAHFRKSFIRMTHKVGI-KEIKFHDLRHTHATLLLKQGVNPKIISERL 336

Query: 288 GHFRLSTT-QIYTNVNSKNGGDWMM 311
           GH  +S T  +Y++V      + + 
Sbjct: 337 GHTDISMTLSVYSHVLPNMQEEAVK 361


>gi|159901555|ref|YP_001547801.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894594|gb|ABX07673.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 160

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/145 (33%), Positives = 71/145 (48%), Gaps = 3/145 (2%)

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPF 219
            ++Y CGLRI E +SL   +I   +  L I  GKG+K R VPL       +  ++     
Sbjct: 1   MVIYACGLRIQEGVSLQVSHIDSARMVLHIHAGKGNKDRRVPLPLPALVRLRTHWRTHRH 60

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
            + L      +R    +P+      R  +   +  G+    T HTLRHS+ATHLL  G +
Sbjct: 61  PIWL--FPARYRDSLDQPMAQRSVARAFQVALQESGIQKPATVHTLRHSWATHLLEAGIN 118

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSK 304
           LR IQ  LGH    TT +YT++  +
Sbjct: 119 LRIIQDWLGHRSPRTTALYTHLTPQ 143


>gi|116627651|ref|YP_820270.1| integrase [Streptococcus thermophilus LMD-9]
 gi|116100928|gb|ABJ66074.1| Integrase [Streptococcus thermophilus LMD-9]
          Length = 388

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 109/302 (36%), Gaps = 29/302 (9%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ---KIGDRSLK 89
           K T+++     R     L  +         + +L+   I++ ++K             L 
Sbjct: 82  KNTVKA--NTKRAQKGLLNNHVLPLFGEFKLDKLTTPLIQSMMNKLANSTNTGEAGAYLH 139

Query: 90  R-SLSGI-KSFLKYLKKRKITTESNILNMRNL----KKSNSLPRALNEKQALTLVDNVLL 143
              +  + K  L+Y    ++   +   N+       K   +  +  N  +    +    L
Sbjct: 140 YDKIHALNKRILQYGVVLQVIPTNPANNVVLPRNTQKDKKAKVKHFNNDELKQFL--TYL 197

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI------ 197
            +   +K+ +  +  +   L   G RI+EAL+L+  +I  D S + I    +        
Sbjct: 198 DSLDNSKYKNYYDITLYKFLLATGCRINEALALSWSDIDLDNSVVHITKTLNYEMKLNSP 257

Query: 198 ------RIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQ 249
                 R + +       +  Y      +       +  +F     +  N    Q  +  
Sbjct: 258 KSKSGYRDIDIDKQTVTMMKRYQHKQTQEAWKLGRTETVVFSDFIHEYPNSRTLQSRLGT 317

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGD 308
             +  G+  +   H  RH+ A+ LL++G   + +Q  LGH +LS T  IY++++ +N   
Sbjct: 318 HFKRAGVT-NIGFHGFRHTHASLLLNSGIPYKELQHRLGHSKLSMTMDIYSHLSKENAKK 376

Query: 309 WM 310
            +
Sbjct: 377 AV 378


>gi|328952607|ref|YP_004369941.1| integrase family protein [Desulfobacca acetoxidans DSM 11109]
 gi|328452931|gb|AEB08760.1| integrase family protein [Desulfobacca acetoxidans DSM 11109]
          Length = 281

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 57/286 (19%), Positives = 105/286 (36%), Gaps = 34/286 (11%)

Query: 37  QSYECDTRQFLIFLAFYTE------EKITIQTIRQLSYTEIRAFISKR------RTQKIG 84
             Y    RQ   F  F  +      E      + Q++Y ++    + R      R +   
Sbjct: 3   DHYLEIYRQQKSFHNFKKQIVQTLTEAFGSTRLSQITYLDLEKHRNTRKATPTWRGETRS 62

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQALTLVDNVL 142
           D  + R ++ +K  L    +  +   +     + L  K++N   R L+E +   L+    
Sbjct: 63  DARVNREMAVLKHMLNKAVEWGMLEGTPFKKGQKLMFKENNHSLRFLSEAEIEALLAVCP 122

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
            H              I+      G+R  E LSL  + I      L I+ K    R +P+
Sbjct: 123 PHL-----------RPIVETALLTGMRKEELLSLKWEQINHGLIHL-IRTKSGNPRHIPI 170

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
              + +   +         N      +F    G+  N    +R      R  G+  +   
Sbjct: 171 SGRLVEIFQQLRHQ-----NQLKSPYVFCDGEGRRFN--SVKRSFATACRKAGIE-NFRF 222

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           H LRH+FA+HL+  G  L+++Q +LGH  +     Y +++  +  +
Sbjct: 223 HDLRHTFASHLIMRGAGLKTVQELLGHSDIKMNMRYAHLSPGHLQE 268


>gi|297516648|ref|ZP_06935034.1| tyrosine recombinase [Escherichia coli OP50]
          Length = 185

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/148 (29%), Positives = 62/148 (41%), Gaps = 1/148 (0%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAIL 211
            AR+  ++ L Y  G+RISE L L  Q++  ++  + I+  K     + PL    R+A+ 
Sbjct: 12  GARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVE 71

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
            +          +    +F   RG  L+     R IR      G    T  H LRH+   
Sbjct: 72  RWTQERANWKGADRTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGY 131

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            L   G D R IQ  LGH  +  T  YT
Sbjct: 132 ELAERGADTRLIQDYLGHRNIRHTVRYT 159


>gi|293568954|ref|ZP_06680267.1| phage integrase family protein [Enterococcus faecium E1071]
 gi|291588387|gb|EFF20222.1| phage integrase family protein [Enterococcus faecium E1071]
          Length = 378

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 53/318 (16%), Positives = 118/318 (37%), Gaps = 42/318 (13%)

Query: 18  RQNWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
            + +L     E     L   T ++Y    +        + +  +  + +  LS   ++ F
Sbjct: 64  VKQYLDFWMEEYVKLNLKYNTYENYRFTIK-------NHIDGYLGKKKLTDLSPALLQNF 116

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQ 133
           I+    +    +++  + S +K+ L        +  ++ +L ++  K     P    + +
Sbjct: 117 INAEFKKGYSKKTMTITHSVLKNALNMAVYPWGLIKQNPMLYVKIPKYEER-PTTKKDLK 175

Query: 134 ALTL--VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            ++L   D++L  T     +        L + +  G+R+ E   LT  N+     T  ++
Sbjct: 176 IISLEDFDHMLEITPEGHPFYIP-----LNIGFYTGMRVGEVCGLTWDNVDFSNGTTTVE 230

Query: 192 GKG---------------DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
            +                   R + +  ++   + ++      +     +L +       
Sbjct: 231 KQMVKNDGAWIYGTPKTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCT 290

Query: 237 P-----LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
                 + P V +   +++   L L  +   H+LRH+ AT LL NG  ++ I   LGH R
Sbjct: 291 KEDGGLVTPSVVKWNTKRISNALSLSFN--FHSLRHTHATLLLENGAKMKEISERLGHSR 348

Query: 292 LSTTQ-IYTNVNSKNGGD 308
           +S T   Y++V  K   +
Sbjct: 349 ISITMDTYSHVTDKMRNE 366


>gi|89147536|gb|ABD62628.1| integrase [uncultured bacterium]
 gi|89147547|gb|ABD62633.1| integrase [uncultured bacterium]
 gi|89147555|gb|ABD62637.1| integrase [uncultured bacterium]
 gi|89147594|gb|ABD62656.1| integrase [uncultured bacterium]
 gi|89147620|gb|ABD62669.1| integrase [uncultured bacterium]
          Length = 163

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/111 (34%), Positives = 53/111 (47%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           QG G       L      A  E+     F        P    +R   ++  V Q+ ++  
Sbjct: 52  QGYGAVYLPFALERKYPAANREWGWQYVFPAAKRSVDPRSGAVRRHHVDEQVLQKAVKAA 111

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            R  G+    + HT RHSFATHLL NG D+R++Q +LGH  + TT IYT+V
Sbjct: 112 IRAAGINKPGSCHTFRHSFATHLLENGYDIRTVQELLGHKDVKTTMIYTHV 162


>gi|37524769|ref|NP_928113.1| MrfI protein [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36784194|emb|CAE13063.1| MrfI protein [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 190

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 75/180 (41%), Gaps = 8/180 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L   +   +++               R+  +L + +  G R+SE  +LT  ++  +  
Sbjct: 5   KFLTRYEINAILE------KARQGCHAERDYCMLLMCFIHGFRVSELCNLTLSDLDLNSE 58

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            + ++  KG      PL+P   KA+ ++ ++       + +  +F   +   ++      
Sbjct: 59  LIHVRRLKGGLSTTHPLIPEEIKALNQWLNIRKSWRESDSE-WVFLSQKSGAISRQQVYG 117

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +++  +   + +S   H LRH+    L   G D R IQ  LGH  +S T IYT  N K 
Sbjct: 118 LLKRYGKQALVNISPHPHMLRHACGYALADLGRDTRLIQDYLGHRNISHTVIYTASNVKR 177


>gi|291485264|dbj|BAI86339.1| hypothetical protein BSNT_04132 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 339

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 103/292 (35%), Gaps = 27/292 (9%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           + T+  Y      F             +  +  ++   +  ++       + +++    L
Sbjct: 65  RRTISDYVLHVEHFQSI--------TNVNHVADITADTVYKWLDSM---NVSNQTKLTRL 113

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +K+FL                + N+K    +     E+       NVLL     + +I
Sbjct: 114 KCLKAFLSRCFDNGWIEIKFWKTI-NIKVDQKVKEGATERDV-----NVLLSLLDLSNFI 167

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG--KGDKIRIVPLLPSVRKAI 210
             R+   + +++  G+RI+    L  ++I  + + L ++G    +  +I      V K +
Sbjct: 168 QLRDDTAVLVMFKTGIRINTLTQLEERHIDFNNNVLNLEGSIMKNHQQIKLPFDDVIKRM 227

Query: 211 LEYY---DLCPFDLNLNIQLPLFRGIRGKPL----NPGVFQRYIRQLRRYLGLPLSTTAH 263
           L+     +    D        +F    G  +         Q+ + +  +  GL  +   H
Sbjct: 228 LKVLIKQNAMIRDGYGKKNSLIFITKYGDVISNSPTHNNIQKRLNKYAKMYGL-KNINPH 286

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            LR  FA  LL  G ++  I   LGH  +S T  Y +++     + +    D
Sbjct: 287 ALRRGFAKSLLDKGANVAVISKALGHSDISVTTKYLHLDVDEVANSLRSYLD 338


>gi|291551251|emb|CBL27513.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 409

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 60/328 (18%), Positives = 117/328 (35%), Gaps = 62/328 (18%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           RGL   T ++Y+     F+  +       I  + I  L  ++I+ + +    ++ +   +
Sbjct: 83  RGLKNNTFENYKYMYNTFVRPV-------IGSKRISTLKKSDIKKYYNYLVDERNLKPST 135

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNM-RNLKKSN----SLPRALNEKQALTLVDNVL 142
           +    + +   L+          +   N+ R LKK++       RAL + +    ++ + 
Sbjct: 136 IDNIHTVLHQVLQIAVDDDFIRNNPSDNVLRELKKAHCFQSEKRRALTKHEQELFLNFM- 194

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK------ 196
                +T  +      +  ++ G GLR+ E   L   +I  +   + +            
Sbjct: 195 -----KTHPVYEHWYPVFAVMIGTGLRVGEVTGLRWCDIDMESGMIDVNHTLVYYDHRTE 249

Query: 197 ------------------IRIVPLLPSVRKAI------LEYYDLCPFDLNLNIQLPLFRG 232
                             +R VP+L  VR+A        E   L            +F  
Sbjct: 250 GSKSGCYFNVNTTKTLASMRQVPMLGFVREAFEQEKQKQEDLGLHCEVTIDGYTDFIFIN 309

Query: 233 IRGKPLNPGVFQRYIRQLRRYLG------------LPLSTTAHTLRHSFATHLLSNGGDL 280
             G+  +     + IR++ R               L    + H+LRH+F T +   G ++
Sbjct: 310 RFGQAQHQATLNKAIRRIIRDCNDEQFLHSDEPDVLLPHFSCHSLRHTFTTRMCEAGVNI 369

Query: 281 RSIQSILGHFRLSTT-QIYTNVNSKNGG 307
           + IQ  LGH  +STT  IY +V  +   
Sbjct: 370 KVIQDALGHSDISTTLNIYADVTKEMKA 397


>gi|15894395|ref|NP_347744.1| XerC/XerD family integrase/recombinase [Clostridium acetobutylicum
           ATCC 824]
 gi|15024028|gb|AAK79084.1|AE007627_8 Integrase/recombinase (xerC/xerD family); CF-10 family [Clostridium
           acetobutylicum ATCC 824]
 gi|325508523|gb|ADZ20159.1| Integrase/recombinase (xerC/xerD family); CF-10 family [Clostridium
           acetobutylicum EA 2018]
          Length = 340

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 59/311 (18%), Positives = 123/311 (39%), Gaps = 31/311 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + ++Q  E E   SK T++ Y+ + + FL++L  +   K     I++      + ++  
Sbjct: 27  FEEFIQYCEAED-KSKETVRVYKSNIKIFLVWLLKFARNKR-FVDIKKKDIMLYQNWL-- 82

Query: 78  RRTQKIGDRSLKRS---LSGIKSFLKYLKKRKITT-ESNILNMRNL-KKSNSLPRALNEK 132
             TQ++    +K     LS + SF++ +   +     + I  ++   K+          +
Sbjct: 83  LNTQRLSPARIKHLRAPLSSMSSFVEDILDDEYPEFRNIISKIKPPTKQETREKTVFTNE 142

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP----QNIMDDQSTL 188
           Q   L++ ++    ++        +  +  L   G+R SE L        +N +D++   
Sbjct: 143 QVEKLIEMLIKDKKYQQ-------ACFVACLAASGVRKSEILQFKVSFFTENSLDEEGMY 195

Query: 189 R---IQGKGDKIRIVPLLPSVRKAILEYYDLCPFD------LNLNIQLPLFRGIRGKPLN 239
               I+ KG      PL+  + K I+++      +      ++ +    +    +  P  
Sbjct: 196 HTPKIRTKGHGKLGKPLVKFIIKDIVKHAFDLWIEERKQLGIDTDDLFVVKHKDKWYPAK 255

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                 ++ +  + +G       H  RH  AT L  NG  +  I+  LGH   STTQIY 
Sbjct: 256 VSTVNGWMNKFSKIIG--EDCYTHAFRHYAATWLKRNGATIDQIKDFLGHNDTSTTQIYI 313

Query: 300 NVNSKNGGDWM 310
           +++       M
Sbjct: 314 DIDGAENMKGM 324


>gi|237743641|ref|ZP_04574122.1| predicted protein [Fusobacterium sp. 7_1]
 gi|229432672|gb|EEO42884.1| predicted protein [Fusobacterium sp. 7_1]
          Length = 414

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 62/316 (19%), Positives = 126/316 (39%), Gaps = 50/316 (15%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLK 89
           LS +T   Y+ + ++   +          + +  +L+  +I  ++      +K+   ++ 
Sbjct: 107 LSIVTKNGYKNEVKKMKNYA------PFKLISFAELTKKDIEHYLEYLFIIEKLAPSTVA 160

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           +    + +  K   +R++   + I     +K   +  +AL++++A   ++ +        
Sbjct: 161 KIRVVLGTLYKVAIQRELVEYNLIYKTEPIKVKKAKRKALSKEKAKIFLEALE------- 213

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI------------ 197
              ++      YLL   GLR SE L +T  NI  ++ +L ++                  
Sbjct: 214 ---NSEYKLEFYLLIFLGLRKSELLGITIDNINFEEKSLYLEQSLIWDSENKIYVVNREM 270

Query: 198 ------RIVPLLPSVRKAILEYYDLCPFD-------------LNLNIQLPLFRGIRGKPL 238
                 R  PL+P +   + E  +    D             LN N +  L     GK L
Sbjct: 271 KSPLANRKFPLIPILTDFLAERINRIKEDKTFFGNTYGIDKKLNFNAEGYLCIDREGKIL 330

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-I 297
                   + ++ + +GL    + H LRH+ AT + S G DL+ IQ  LGH  +STT  I
Sbjct: 331 RKFKLNYELDKILKKIGLE-HLSVHELRHTCATLMYSEGVDLKKIQYWLGHSNISTTANI 389

Query: 298 YTNVNSKNGGDWMMEI 313
           Y + ++    + + ++
Sbjct: 390 YAHYDNSKNFEVIGKL 405


>gi|167900078|ref|ZP_02487479.1| phage integrase family protein [Burkholderia pseudomallei 7894]
          Length = 524

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 68/329 (20%), Positives = 118/329 (35%), Gaps = 39/329 (11%)

Query: 16  KERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           KE +  +    IERG  LS LT      D   +  FL   T  +  I   R     E R 
Sbjct: 203 KEAERLILWAIIERGRALSSLT----TDDAIAYRAFLRRPTPRERWIGPSRPRHSAEWRP 258

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR----NLKKSNSLPRAL 129
           F     T  +  RS   +L+ + +  ++L +++    +    ++      +    + R  
Sbjct: 259 F-----TGALSARSAAYALNVLSALFRWLIEQRYVLANPFAGVKVKSQAPRTGLDVSRGF 313

Query: 130 NEKQALTL--VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS- 186
           +E + L +  + + L  +   +     R   +L   Y  GLR SE +     ++  D+  
Sbjct: 314 SEGEWLLIRTLADGLEWSYGWSVPAAQRLRFLLDFGYATGLRASELVGAMLADVRRDEHG 373

Query: 187 --TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR----------GIR 234
              L + GKG K   V L    R A+ +Y       +      P             GI 
Sbjct: 374 DHWLHVLGKGGKRGKVTLPALARMALDQYLVQRGLPVTPIRWNPATPLVASLEEDGAGIE 433

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTT--------AHTLRHSFATHLLSNGGDLRSIQSI 286
              L   V +R+       +      T         H +RH+ A+H L+ G +L  ++  
Sbjct: 434 STRL-WRVLRRFFVLAADAIQEERPATAEKLHRASPHWMRHTHASHALARGAELIMVRDN 492

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L H  +STT  Y + +         + + 
Sbjct: 493 LRHASISTTSTYLHSDEVQRARQFDQAFA 521


>gi|290474154|ref|YP_003467031.1| fimbriae regulatory protein [Xenorhabdus bovienii SS-2004]
 gi|289173464|emb|CBJ80243.1| fimbriae regulatory protein [Xenorhabdus bovienii SS-2004]
          Length = 234

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 75/180 (41%), Gaps = 13/180 (7%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L + +   L+      T        ARN  ++++ +  G R+SE LSL   ++  D  
Sbjct: 5   KYLTQSEIEMLL------TESGKHAHAARNICMMFMGFIHGFRVSELLSLKLSDVDLDSR 58

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDL------NLNIQLPLFRGIRGKPLN 239
           +LR+Q  K     I P++    + + ++    P  L      N  +   LF    G+ ++
Sbjct: 59  SLRVQRLKNGFSTIHPMVSREIQLLRQWLKGRPNYLPGTPQANSEVSDWLFLSRSGQRMS 118

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                + IRQ      L +    H LRH+    L  NG D R IQ  LGH  +  T  YT
Sbjct: 119 RQQVYKIIRQTSLKAKLSICANPHMLRHACGYALADNGVDTRLIQDYLGHRNIRHTVRYT 178


>gi|110807982|ref|YP_691502.1| tyrosine recombinase [Shigella flexneri 5 str. 8401]
 gi|300818491|ref|ZP_07098700.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 107-1]
 gi|300823755|ref|ZP_07103880.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 119-7]
 gi|300895832|ref|ZP_07114414.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 198-1]
 gi|300905283|ref|ZP_07123055.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 84-1]
 gi|300926461|ref|ZP_07142257.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 182-1]
 gi|300977981|ref|ZP_07174112.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 45-1]
 gi|301021321|ref|ZP_07185350.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 69-1]
 gi|301048270|ref|ZP_07195304.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 185-1]
 gi|301305107|ref|ZP_07211207.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 124-1]
 gi|301328032|ref|ZP_07221193.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 78-1]
 gi|301646818|ref|ZP_07246667.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 146-1]
 gi|309795580|ref|ZP_07689996.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 145-7]
 gi|110617530|gb|ABF06197.1| Type 1 fimbriae Regulatory protein fimE [Shigella flexneri 5 str.
           8401]
 gi|300299892|gb|EFJ56277.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 185-1]
 gi|300360248|gb|EFJ76118.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 198-1]
 gi|300398172|gb|EFJ81710.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 69-1]
 gi|300402867|gb|EFJ86405.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 84-1]
 gi|300409775|gb|EFJ93313.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 45-1]
 gi|300417568|gb|EFK00879.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 182-1]
 gi|300523667|gb|EFK44736.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 119-7]
 gi|300528895|gb|EFK49957.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 107-1]
 gi|300839612|gb|EFK67372.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 124-1]
 gi|300845479|gb|EFK73239.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 78-1]
 gi|301074988|gb|EFK89794.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 146-1]
 gi|308120704|gb|EFO57966.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 145-7]
 gi|315255840|gb|EFU35808.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 85-1]
 gi|315286852|gb|EFU46269.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 110-3]
 gi|315293234|gb|EFU52586.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 153-1]
 gi|315298920|gb|EFU58174.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 16-3]
 gi|324005154|gb|EGB74373.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 57-2]
 gi|324016931|gb|EGB86150.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 117-3]
          Length = 184

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/148 (29%), Positives = 62/148 (41%), Gaps = 1/148 (0%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAIL 211
            AR+  ++ L Y  G+RISE L L  Q++  ++  + I+  K     + PL    R+A+ 
Sbjct: 11  GARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVE 70

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
            +          +    +F   RG  L+     R IR      G    T  H LRH+   
Sbjct: 71  RWTQERANWKGADRTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGY 130

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            L   G D R IQ  LGH  +  T  YT
Sbjct: 131 ELAERGADTRLIQDYLGHRNIRHTVRYT 158


>gi|295102658|emb|CBL00203.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 485

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 59/325 (18%), Positives = 114/325 (35%), Gaps = 46/325 (14%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-KITIQTIRQLSYTEIRAFISKR 78
           NWL+ ++     S++ + +Y    R  +  +  Y E    T+Q + Q     I+ F    
Sbjct: 170 NWLKMMK-----SRVEITTYTSYERAIIHKIVPYFEPLHYTLQDMEQ-HPKYIQDFYQHE 223

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   ++    + I+  L+Y  +  +   +    +   +K        + ++   L 
Sbjct: 224 LDRGLTANTVIHYHANIRKCLQYAFQIGMIRSNPADRVERPRKEKFKSEIYSGEELEQLF 283

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----- 193
             +    +            I+   Y  GLR SE + L    I  +   + IQ       
Sbjct: 284 TAIQGDPAEFG--------VIMAAFY--GLRRSEIVGLKWDAIDFENKKISIQHTVVTAK 333

Query: 194 ---------------GDKIRIVPLLPSVRKAILEY-------YDLCPFDLNLNIQLPLFR 231
                              R +PL+P+  + + +          +C      +    ++ 
Sbjct: 334 VNGTVTEIARDKTKTKSSCRTLPLIPACEQMLNKMKKEQEQNRKVCGKSYCTDYLDYIYV 393

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
              GK + P    ++                H LRHS A+ L +NG  L+ IQ  LGH  
Sbjct: 394 DPMGKRIRPDFLSQHFPDFLV-AHQMKRIRFHDLRHSCASLLYANGVSLKEIQEWLGHSD 452

Query: 292 LSTTQ-IYTNVNSKNGGDWMMEIYD 315
           +STT  IYT+++  +       I +
Sbjct: 453 ISTTSNIYTHLDFSSKVSSANAIVN 477


>gi|320010246|gb|ADW05096.1| integrase family protein [Streptomyces flavogriseus ATCC 33331]
          Length = 382

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 67/335 (20%), Positives = 125/335 (37%), Gaps = 45/335 (13%)

Query: 11  SFELLKERQNWLQ-NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           S +L +    WL+  ++  R LS  TL  YE   R +LI +       +  + +  LS  
Sbjct: 69  SAKLSEWLPYWLEHYVQSRRKLS--TLDKYEAHVRLYLIPM-------LGTKRLETLSVA 119

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++R FI+ R        + K +   +++ L    + ++ T +    +   +         
Sbjct: 120 DVRRFIA-RVQAAQTAATAKEAHRVLRTALTAAVREELITRNVASLVEPPRVKQREISPW 178

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           + K+ L+ ++                  A   L    GLR  E + L   ++  D   L 
Sbjct: 179 SLKETLSFLEAARRDPL----------YAAFMLAICMGLRRGELVGLRWTDVDLDNRVLH 228

Query: 190 IQGK-------------GDKIRIVPLLPSVRKAILEYYDLCPFD------LNLNIQLPLF 230
           ++ +               + R V  +P++  A L ++ L   +      +  +    +F
Sbjct: 229 VRHQTQRRRGTLYDDDPKSRRRRVVPMPALCVAPLRWHRLKQRETFADTGVTWSESGYIF 288

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
               G+P+ P    R   ++    GL +    H  RH  AT L + G   R I  ILGH 
Sbjct: 289 ATRNGRPVEPRNVYRSFTRVAAGAGLRV-VRLHDARHGCATLLTAAGVAPRVIMEILGHS 347

Query: 291 RLSTTQ-IYTNV---NSKNGGDWMMEIYDQTHPSI 321
           ++S T  +YT+V     +     M  +  +  P  
Sbjct: 348 QISITMDVYTHVVHDTQREAISHMDRLLKRRLPGA 382


>gi|226366650|ref|YP_002784433.1| tyrosine recombinase [Rhodococcus opacus B4]
 gi|226245140|dbj|BAH55488.1| putative tyrosine recombinase [Rhodococcus opacus B4]
          Length = 209

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 74/192 (38%), Gaps = 16/192 (8%)

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QS 186
            L   Q   L+D +       T W   R+ A+  L    GLR+SE +SLT  ++     +
Sbjct: 3   YLTATQVKALLDGI-----DTTTWTGRRDQAMFTLAAHTGLRVSELISLTVDSVHLGTAA 57

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            +   GKG K R  PL  +    +  Y          +    LF   RG+PL+     + 
Sbjct: 58  HVACTGKGRKHRATPLTTATAALLKTYLHERH----THPGHALFPNPRGEPLSVDAIGQR 113

Query: 247 IRQLRRYLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +R   R              T HTLRH+ A   L+ G D   I   LGH   +TT IY +
Sbjct: 114 LRTHVRRAARACPELAGTHVTVHTLRHTAAMRFLAAGIDTAVIALWLGHESTATTSIYLH 173

Query: 301 VNSKNGGDWMME 312
            +       +  
Sbjct: 174 ADMDIKRRALER 185


>gi|257043833|gb|ACV33249.1| DNA integrase [Klebsiella pneumoniae]
          Length = 216

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 91/218 (41%), Gaps = 28/218 (12%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
             T+ ++ GKG K R + L  S+  ++ E         
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWW 199


>gi|53712631|ref|YP_098623.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52215496|dbj|BAD48089.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 409

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 53/289 (18%), Positives = 105/289 (36%), Gaps = 27/289 (9%)

Query: 35  TLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
           T + YE   R    F+   Y    I+I+ I  +  T+   ++  R   K G  +  + + 
Sbjct: 130 TYRKYEVTRRHLAEFIQSKYNVSDISIKEISPMFITDFELYL--RTACKCGYNTTAKFMQ 187

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
             K  +   +   I       + + ++        L E +   ++   ++    E     
Sbjct: 188 FFKRIIIIARNNGILVGDPFASYK-IRLEKVDRGYLTEDEIKIILKKKMVSERLE----- 241

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
                +      CGL  S+  +L  +N       +   +  + K +    VPLL   +  
Sbjct: 242 -HVRDLFVFSCFCGLAYSDVANLRQENIQKSFDGNLWIITKRQKTNTDVNVPLLDIPKMI 300

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           + +Y            +  L  G     ++      Y++++    G+  + T H  RH+F
Sbjct: 301 LKKY------------KGKLPDGKILPVISNQKLNAYLKEIADICGIKKNLTFHLARHTF 348

Query: 270 -ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
             T  LS G  + ++  +LGH  + TTQIY  + +   G  M  +  + 
Sbjct: 349 ATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSKIGSDMQGLDKKF 397


>gi|317501527|ref|ZP_07959724.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316897082|gb|EFV19156.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 397

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 56/302 (18%), Positives = 104/302 (34%), Gaps = 34/302 (11%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
           +   +Q    +    E+K+  ++I  +  ++ + +  + + +     ++      +K+  
Sbjct: 100 KSTIKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMKDKGFSYNTINNHKRSLKASF 159

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
               +     ++      + K S  L     EK ALT      L +  +T  +  +    
Sbjct: 160 YIAIQDDCVRKNPF----DFKLSEVLENDTKEKVALTEEQEQALLSFIKTDNVYHKYYDD 215

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLL 203
           + +L   GLRISE   LT  +I      + I                      IR VPL 
Sbjct: 216 VLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGYYIETPKTKSGIRQVPLS 275

Query: 204 PSVRKAILEYYDLCPFDLNL---NIQLPLFRGIRGKP--------LNPGVFQRYIRQLRR 252
               +A        P             LF   + KP        L   + ++Y +  + 
Sbjct: 276 RETIQAFQRVMKKRPKAEPFVIDGRGNFLFVNHKDKPKVAIDYNALFVRMVKKYNKHHKD 335

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMM 311
                   T HTLRH+F T L S   + + +Q I+GH  +S T   Y + +       + 
Sbjct: 336 --NPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQ 393

Query: 312 EI 313
            +
Sbjct: 394 RL 395


>gi|257870759|ref|ZP_05650412.1| phage integrase [Enterococcus gallinarum EG2]
 gi|257804923|gb|EEV33745.1| phage integrase [Enterococcus gallinarum EG2]
          Length = 383

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/327 (13%), Positives = 110/327 (33%), Gaps = 48/327 (14%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
             +WL+  +  + +   T+ +          F+  +   K     + Q++ +  +  +++
Sbjct: 72  YDDWLE--QHRKSVKSSTVATNRR-------FIEGHVLPKFGKLKLDQITVSFCQKCVNE 122

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN--MRNLKKSNSLPRALNEKQAL 135
              +      ++R        + Y    ++   + +    +   K+    P   ++ +  
Sbjct: 123 WHDKYKQYHYIRR---ATAQVMNYGVSMELMESNPMKKTILPRKKEEEKKPNFYSKDELH 179

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----- 190
             +       +      + +  A   LL   G+R SEAL L  +++     TL I     
Sbjct: 180 EFM-------TFVKTLDNYKYYAFFRLLAITGMRKSEALGLYIKDLNIFNKTLTIGKTIA 232

Query: 191 -----------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL------NIQLPLFRGI 233
                          +  R + L     + + +++ +   D           +  +F  +
Sbjct: 233 IDEYDQVVLQTPKTKNSYRTISLDDETIRILQKWFSIQKEDYFKLGFNTSKAKQLMFSNM 292

Query: 234 RGKPLNPGVFQRYIRQLRRYL---GLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
                 P V   ++  +       GL     + H  RH+  + +   G  +  +Q  LGH
Sbjct: 293 SNDLYYPQVINDWLDWIYDKAEKEGLTLKRISPHGFRHTACSLMFEAGATINEVQKRLGH 352

Query: 290 FRLSTTQ-IYTNVNSKNGGDWMMEIYD 315
             + TT  IY++V  +   +   ++ +
Sbjct: 353 KDVKTTMNIYSHVTPQQAENTSQKLAN 379


>gi|228476251|ref|ZP_04060953.1| integrase [Staphylococcus hominis SK119]
 gi|228269654|gb|EEK11156.1| integrase [Staphylococcus hominis SK119]
          Length = 348

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/291 (18%), Positives = 113/291 (38%), Gaps = 36/291 (12%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD--RSL 88
           LS      YE     FL       +       I+ ++ +E + FIS     +  +  R +
Sbjct: 81  LSSKQQYWYEHSLDLFLKHFGEDIK-------IKDITRSEYQKFISNYAQGRTSETVRKV 133

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLP-RALNEKQALTLVDNVLLHT 145
              LS   S +K         +    N++    K++     + L  +Q   L ++  L T
Sbjct: 134 NLYLS---SGIKDAVYDGYIKKDPTYNVKAKGTKQAKKEDVKFLTIRQYEELREHFKLRT 190

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG--DKIRIVPLL 203
              T         +LY+L   G R SE   +T  +++  +  + + G    +  R V + 
Sbjct: 191 DKST--------IMLYILLITGARFSEVNRMTYDDLLITKGLIHLPGTKTENADRFVEVS 242

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
            +  K I +  +  P  ++  +            L+     +   + ++   +    T +
Sbjct: 243 KNDLKHIYKAIETHPHRIDNKLFS----------LSHAAISKVFNKAKKKYNINEDVTPY 292

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           +LRH+ A++L+S G  +  I   LGH  ++ T  +YT++  ++  +   ++
Sbjct: 293 SLRHTHASYLISKGIPIEYISKRLGHASIAITLDVYTHLLDEHKKEQGQKV 343


>gi|87199951|ref|YP_497208.1| phage integrase [Novosphingobium aromaticivorans DSM 12444]
 gi|146275577|ref|YP_001165738.1| phage integrase family protein [Novosphingobium aromaticivorans DSM
           12444]
 gi|146276028|ref|YP_001166188.1| phage integrase family protein [Novosphingobium aromaticivorans DSM
           12444]
 gi|87135632|gb|ABD26374.1| phage integrase [Novosphingobium aromaticivorans DSM 12444]
 gi|145322268|gb|ABP64212.1| phage integrase family protein [Novosphingobium aromaticivorans DSM
           12444]
 gi|145322719|gb|ABP64662.1| phage integrase family protein [Novosphingobium aromaticivorans DSM
           12444]
          Length = 388

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 59/378 (15%), Positives = 126/378 (33%), Gaps = 86/378 (22%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ++++  ++W+ +LE +   S  T+++Y      F  FL            I + +     
Sbjct: 16  DVVECLRHWIVHLE-QTHASPNTIRAYVRHVVDFASFLGANG------AGIHEATVALYD 68

Query: 73  AFISKRRTQK-------------------IGDRSLKRSLSGIKSFLKYL----------- 102
           +F++ R  ++                   +   +  +    +KSF ++            
Sbjct: 69  SFLAWRLARRKDALPSPRLILLRKQETRILAPSTRNQIQLAVKSFYRFYNGTDDFAVDTT 128

Query: 103 ----KKRKITTESNILNMRNLKKSNS-----------------LPRALNEKQALTLVDNV 141
                          L   + +++                   L + L   + L L++  
Sbjct: 129 EVTKAYDGHRIYKPFLEHISQRRTTRRKDRYLSGDPGRVQQQVLKKRLTPSEVLRLIEAC 188

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----------Q 191
            L           R++ ++ LLY  GLRI EAL L   +I   +  + +          +
Sbjct: 189 GLA----------RDAFLVVLLYNTGLRIGEALGLRHVDIDLAEKVIWVVPREDNANEAR 238

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIR----GKPLNPGVFQRY 246
            K  + R VP+   V    ++Y           +    +F  ++    G  ++    Q+ 
Sbjct: 239 AKSGRTRGVPVHDYVLNMYVDYITSDEYLPAFESGAEYVFTNVKAGVIGHAMSLSYAQKL 298

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKN 305
              L +   +    + H  RHS A+  ++ G  L  +   LGH    TT   Y ++ +  
Sbjct: 299 AGLLEQRTHIAF--SWHMFRHSHASEAIAAGYSLLEVADRLGHASPQTTAAFYQHLFASE 356

Query: 306 GGDWMMEIYDQTHPSITQ 323
                +   D+ H  + +
Sbjct: 357 IRRLYLTGPDEVHERLEK 374


>gi|325273253|ref|ZP_08139531.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas sp. TJI-51]
 gi|324101584|gb|EGB99152.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas sp. TJI-51]
          Length = 402

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 59/323 (18%), Positives = 114/323 (35%), Gaps = 51/323 (15%)

Query: 29  RGLSKLTLQSY-----------ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +  +  TLQSY                Q       Y+   +  + + +++  ++ A   K
Sbjct: 89  KRRAAHTLQSYLEESYYPWLETHHKAHQKTRHAIEYSFGALMRKPLAEITQRDLEAMRVK 148

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS-NSLPRALNEKQALT 136
                + D +  R L+ ++  L    +     +  +  ++ ++    +  R L+ ++   
Sbjct: 149 WLAAGLRDATANRKLAALRGALSKAVEWGALEQHPMTKLKPMRLDTRARVRFLSSEENRR 208

Query: 137 L---VDNVLLHTSHETKWIDARNS----------------------AILYLLYGCGLRIS 171
           L   +D+       E    +                          AI+ L    GLR  
Sbjct: 209 LRQALDDREERIRDERDSANRWRRERKKAELPDLRKVAFADHLKPMAIISL--NTGLRRG 266

Query: 172 EALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
           E  +LT  +I   Q TL + G   K D+ R +PL     + I  +          N    
Sbjct: 267 ELFNLTWADIDLGQKTLTVVGEGAKSDQTRHIPLNKEALQVIKGW------KAQSNGLPL 320

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LF    G  ++    ++    + +   +  S   H LRH+FA++L   G  L +I+ +LG
Sbjct: 321 LFPSQTGGVMD--NVKKSWDGVLKESKIS-SFRWHDLRHTFASNLAMKGVPLNTIRDLLG 377

Query: 289 HFRLSTTQIYTNVNSKNGGDWMM 311
           H  L  T  Y ++   +    + 
Sbjct: 378 HADLKMTLRYAHLAPDSKAAAVE 400


>gi|304382759|ref|ZP_07365243.1| integrase [Prevotella marshii DSM 16973]
 gi|304336078|gb|EFM02324.1| integrase [Prevotella marshii DSM 16973]
          Length = 406

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 70/319 (21%), Positives = 132/319 (41%), Gaps = 31/319 (9%)

Query: 14  LLKERQNWL----QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLS 67
           LL+    +L    + + I+R L  L L++Y+      L  L  Y ++K  +  I   QL 
Sbjct: 110 LLESFGEYLTQTKERIGIDRALKTLKLRTYQ------LSLLCEYVQKKYKVSDIPLSQLD 163

Query: 68  YTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
            T I  F       +++   S+  +LS +++ ++   K+ +      L   + ++    P
Sbjct: 164 NTFIEGFEYYLTIDRQLKRSSISSTLSTLQTIVRMAVKKGVLDFYPFLGY-SYERPKGEP 222

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R++ + +   ++D   L    E   I      +       GL IS+  +L  +NI+ ++ 
Sbjct: 223 RSITQDELQKIID---LEIEWENYRIV---RDLFVFSCFSGLAISDVRNLREENIVLEEG 276

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            L I+G+  K +    +  +  A                 +P             V    
Sbjct: 277 ELCIKGRRMKTKTPYRVQVLPPAWAIMERYRGKRAGFVFDVP----------TTDVILNG 326

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           I  ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQIY  V+S+ 
Sbjct: 327 IHHIQRNIGMETPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAAVSSER 386

Query: 306 GGDWMMEIYDQTHPSITQK 324
               M ++  +   + T K
Sbjct: 387 IHRDMQKVQQRIQDTFTLK 405


>gi|261345904|ref|ZP_05973548.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
 gi|282565988|gb|EFB71523.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
          Length = 329

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 95/256 (37%), Gaps = 32/256 (12%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE-SNIL 114
             +   ++ Q++   +  + S R    +   ++ R L+ +      L +    ++ + I 
Sbjct: 91  NDMGNPSVYQITPKLLGQYRSDRLQSGVKASTVNRELNLLMGIFTSLAEIGECSKTNPIK 150

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            +  LK+       L +     L++            ++     I  L    G R  EA 
Sbjct: 151 GLSKLKEEKPEMSYLTKSDIEKLLNA-----------VEGDYWRITVLCLSTGARWGEAT 199

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
            L  +N++  + T  ++ K  + R VP+   V KA+        F+ +      + + ++
Sbjct: 200 QLRAENLLHGRVTF-MKTKNGRHRTVPISDEVMKAVKIKESGLLFNADYETYRAILKNVK 258

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
                                LP     H LRH+FA H + NGG++ ++Q I+GH  +  
Sbjct: 259 PD-------------------LPHGQAVHALRHTFAAHFMMNGGNILTLQKIMGHATIQQ 299

Query: 295 TQIYTNVNSKNGGDWM 310
           T  Y +       + +
Sbjct: 300 TMTYAHFAPDYLNEAI 315


>gi|169349643|ref|ZP_02866581.1| hypothetical protein CLOSPI_00381 [Clostridium spiroforme DSM 1552]
 gi|169293718|gb|EDS75851.1| hypothetical protein CLOSPI_00381 [Clostridium spiroforme DSM 1552]
          Length = 316

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 57/302 (18%), Positives = 106/302 (35%), Gaps = 34/302 (11%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
           +   +Q    +    E+K+  ++I  +  ++ + +  + + +     ++      +K+  
Sbjct: 19  KSTMKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMKDKGFSYNTINNHKRSLKASF 78

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
               +     ++      + K S  L     EK ALT      L +  +T  +  ++   
Sbjct: 79  YIAIQDDCVRKNPF----DFKLSEVLENDTKEKVALTEEQEQALLSFIKTDNVYHKHYDD 134

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLL 203
           + +L   GLRISE   LT  +I      + I                      IR VPL 
Sbjct: 135 VLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGYYIETPKTKSGIRQVPLS 194

Query: 204 PSVRKAILEYYDLCPFDLNL---NIQLPLFRGIRGKP--------LNPGVFQRYIRQLRR 252
               +A        P             LF   +GKP        L   + ++Y +  + 
Sbjct: 195 RETIQAFQRVMKKRPKSEPFVIDGRSNFLFVNHKGKPKVAIDYNALFVRMVKKYNKHHKD 254

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMM 311
                   T HTLRH+F T L S   + + +Q I+GH  +S T   Y + +       + 
Sbjct: 255 K--PLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQ 312

Query: 312 EI 313
            +
Sbjct: 313 RL 314


>gi|261344170|ref|ZP_05971814.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
 gi|282567765|gb|EFB73300.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
          Length = 338

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 98/249 (39%), Gaps = 36/249 (14%)

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R + +  R++   L+  ++    L +  + T E  +  +R+ K        L++ +   L
Sbjct: 123 RLKTVTPRTVNLELAYFRAMFNELIRLDEWTKEHPLAKVRSYKTDEQEMGFLSDDEIRLL 182

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +      TS +          ++ +    G R SEA +LT   I ++  T  ++ KG + 
Sbjct: 183 LSECEKSTSKDLIH-------VVKICLATGARWSEAENLTATQIRNNTIT-YVRTKGKRN 234

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL- 256
           R +P+   +   +                  LF+                R      G+ 
Sbjct: 235 RSIPISDELANEL----------PKGQGNNRLFKSCYS----------AFRSALERTGIE 274

Query: 257 -PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            P   ++H LRH+FA+H + +GG++  +Q ILGH  +  T  Y++ +  +  + +     
Sbjct: 275 LPKQQSSHVLRHTFASHFMMSGGNILVLQRILGHTDIKMTMRYSHFSPNHLSEAV----- 329

Query: 316 QTHPSITQK 324
           + +P    K
Sbjct: 330 EFNPLQKIK 338


>gi|984915|gb|AAC53623.1| recombinase [Cloning vector pBSL175]
          Length = 193

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 91/209 (43%), Gaps = 28/209 (13%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE 212
             T+ ++ GKG K R + L  S+  ++ E
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLRE 190


>gi|17981816|ref|NP_536807.1| integrase [Haemophilus phage HP2]
 gi|145639521|ref|ZP_01795125.1| putative integrase [Haemophilus influenzae PittII]
 gi|13752189|gb|AAK37784.1| integrase [Haemophilus phage HP2]
 gi|145271312|gb|EDK11225.1| putative integrase [Haemophilus influenzae PittII]
 gi|309750497|gb|ADO80481.1| integrase [Haemophilus influenzae R2866]
          Length = 337

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 96/270 (35%), Gaps = 29/270 (10%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKY 101
            +     L      +   +         +    S  +     + ++ R  + +++ F + 
Sbjct: 87  LKNLCANLGDPPANEFNAEIFADYRKRRLDGEFSVNKNNPPKEATVNREHAYLRAVFNEL 146

Query: 102 LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
              RK T E+ +  +R  K+  +    L E+    L+       + +          I+ 
Sbjct: 147 KSLRKWTAENPLDGVRLFKERETELAFLYERDIYRLLAECDNSRNPDLG-------LIVR 199

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           +    G R SEA +LT   +M  + T  +  K  K R VP+   +   + +       D 
Sbjct: 200 ICLATGARWSEAETLTQSQVMPYKITF-VNTKSKKNRTVPISKELFDMLPKKRGRLFNDA 258

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
             + +  +                    LR  + LP     H LRH+FA+H + NGG++ 
Sbjct: 259 YESFENAV--------------------LRAEIELPKGQLTHVLRHTFASHFMMNGGNIL 298

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            ++ ILGH  +  T  Y +    +    + 
Sbjct: 299 VLKEILGHSTIEMTMRYAHFAPSHLESAVK 328


>gi|317057318|ref|YP_004105785.1| integrase family protein [Ruminococcus albus 7]
 gi|315449587|gb|ADU23151.1| integrase family protein [Ruminococcus albus 7]
          Length = 403

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 62/344 (18%), Positives = 125/344 (36%), Gaps = 50/344 (14%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           +GN +     FE + E + +      E+     TL+            L   T + I   
Sbjct: 59  KGNMIVNAAKFETVAE-EWFSTY--AEKNYKPKTLER--------TKQLKARTYKAIGHL 107

Query: 62  TIRQLSYTEIRAFISKRRTQK--------IGDRSLKRSLSGIKSFLKYLKKRKITTESNI 113
            I +++   I+ FI+    +         +  +++K   + I     Y +K ++ +++  
Sbjct: 108 RIDKINTRIIQKFINDLGGEGINIRTGGKLSPKTIKHYSTFISMVFSYAEKMQMISDNPC 167

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
            N+   K +         ++   L+    L     TK+      A L L    G R  E 
Sbjct: 168 KNVLLPKIAEHEKEIYTLEETQHLLS---LLQEAPTKY-----RAFLTLAIYGGFRRGEL 219

Query: 174 LSLTPQNIMDDQSTLRIQ----------------GKGDKIRIVPLLPSVRKAILEYYDLC 217
           L L  +++  + + + I+                     +R +     V   +  +    
Sbjct: 220 LGLEWKDVDFNTNVVSIRRTALYTKEKGHYTDTPKTKGSVRDLKFTADVINILKIHKAEQ 279

Query: 218 PFDL-----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
              +       N    LF    GK ++      ++++L     L      H+LRH  A+ 
Sbjct: 280 AKQILKVGDQWNETDRLFTTWNGKVMDGATPYNWLKKLCDRNNLRF-LGLHSLRHLNASL 338

Query: 273 LLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYD 315
           L+ +G ++R++ + LGH + STT  IY +  +K   + M  + D
Sbjct: 339 LIHSGVNIRTVSACLGHSQTSTTLNIYAHSMAKANAEAMESVAD 382


>gi|294647494|ref|ZP_06725075.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294807460|ref|ZP_06766263.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|317476756|ref|ZP_07935999.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|292637154|gb|EFF55591.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294445355|gb|EFG14019.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|316906931|gb|EFV28642.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 409

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 106/295 (35%), Gaps = 34/295 (11%)

Query: 34  LTLQSYE------CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
            T+ +Y           +F+   + Y    I+I+ I  +  T+   ++  R   K G  +
Sbjct: 126 KTIATYRKYEVTRRHLAEFIR--SKYNVSDISIKEITPMFITDFELYL--RTACKCGYNT 181

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             + +   K  +   +   I       + + ++        L E +   ++   ++    
Sbjct: 182 TAKFMQFFKRIIIIARNNGILVGDPFASYK-IRLEKVDRGYLTEDEIKIILKKKMVSERL 240

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKGDKIRIVPLL 203
           E          +      CGL  S+  +L  +N       +   +  + K +    VPLL
Sbjct: 241 E------HVRDLFVFSCFCGLAYSDVANLRQENIQKSFDGNLWIITKRVKTNTDVNVPLL 294

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              +  + +Y            +  L  G     ++      Y++++    G+  + T H
Sbjct: 295 DIPKMILKKY------------KGKLPDGKILPVISNQKLNAYLKEIADICGIKKNLTFH 342

Query: 264 TLRHSF-ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
             RH+F  T  LS G  + ++  +LGH  + TTQIY  + +   G  M  +  + 
Sbjct: 343 LARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSKIGSDMQGLDKKF 397


>gi|291514614|emb|CBK63824.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 423

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 48/282 (17%), Positives = 96/282 (34%), Gaps = 19/282 (6%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
             D   F+     Y  + I +  + Q    +  A++  +  + + D ++   +  +K  +
Sbjct: 140 RRDLSLFI--CQDYKVKDIPLVELDQSFAEKFAAYL--KHVRGLADTTISVEIKSLKHIV 195

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           K         ++                 L E++   L+   +     +          +
Sbjct: 196 KKAFNDGQMEKNPFAYYYYF-ADQPEIEYLTEEEINKLIIGKVKQQRQDRT------RDM 248

Query: 160 LYLLYGCGLRISEALSL---TPQNIMDDQSTLR-IQGKGDKIRIVPLLPSVRKAILEYYD 215
                  GL  ++   L     +   +    +  I+ K      V LLP  +  + +Y  
Sbjct: 249 FLFCCFTGLSYADLAKLSYEELKQTPNGAWWISSIRQKTKVPFTVKLLPVAKAILEKYRI 308

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
                   N   P   G      +       ++ + R   +  +   H  RH+FAT + L
Sbjct: 309 PANR---FNRLFPENPGKVFPVASLKSSDVCLKHIARQCEITKNLKFHMARHTFATTVSL 365

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            NG  L ++  +LGH   +TTQIY  V ++   + +  I DQ
Sbjct: 366 MNGIPLETVSKMLGHKYTTTTQIYAKVTNQMIDNAISRIEDQ 407


>gi|257415531|ref|ZP_05592525.1| integrase [Enterococcus faecalis AR01/DG]
 gi|257157359|gb|EEU87319.1| integrase [Enterococcus faecalis ARO1/DG]
          Length = 382

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 56/328 (17%), Positives = 113/328 (34%), Gaps = 42/328 (12%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKIT 59
           + N +P   +    +    WL+N        K T++  SY        I    +      
Sbjct: 55  QKNGIPSSTNITFQEVAFMWLENY-------KNTVKESSYSRT----EIIFRKHILPSFG 103

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
              I ++S    +  ++   ++    +     ++ +    K+     +T ++ ++N+   
Sbjct: 104 KIEISKISTAYCQKIVNTWHSKG-SSKQYPLFINYMNQVFKFAINIGVTNQNPVINVIVP 162

Query: 120 K-----KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           K      S    +   + Q    + ++      E+ +I  R+  +  LL   G RI E L
Sbjct: 163 KNQDIITSEKKIKFYTKDQLQIFLKSIEQS---ESAYITIRDYTLFRLLAFSGCRIGELL 219

Query: 175 SLTPQNIMDDQSTLRIQGK---------------GDKIRIVPLLPSVRKAILEY-YDLCP 218
           +LT  ++      L+I                      R + L       + ++  +   
Sbjct: 220 ALTWDDLNIKTGELQINKTIAKSDHYYVSNTPKTKKSNRTLILDAKTITILKKWKLEQKK 279

Query: 219 FDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
           + L L    P  +F     +              R+   LP +   H  RH+ A+ L   
Sbjct: 280 YLLKLGYTQPSRIFTNEENEFTINQAITDRYNIYRKKANLP-NIGLHGFRHTHASLLYYA 338

Query: 277 GGDLRSIQSILGHFRLSTT-QIYTNVNS 303
           G D + +Q  LGH  + TT   YT++ +
Sbjct: 339 GADHKEVQERLGHANIKTTLDTYTHLTN 366


>gi|312888228|ref|ZP_07747805.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311299259|gb|EFQ76351.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 406

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 52/287 (18%), Positives = 101/287 (35%), Gaps = 24/287 (8%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSLK 89
            ++ T   YE   +    FL +    K+    I  + +  I ++    R  +K  + S  
Sbjct: 130 YAQGTADRYETSLKHTQAFLKWKY--KVDDINIEGIDHEFIMSYDFYLRSERKCANNSTV 187

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           + +   K  +          +   +  +  K        L +++  T+       T   +
Sbjct: 188 KYMKNFKKIILMCIDNGWLDKDPFIKYK-PKVKVVAREYLTKEELETM------ATKSYS 240

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLT----PQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
                +   I       GL   +   L      + I   Q     + K +    +PLL  
Sbjct: 241 SSRIEQVKDIFIFCCYTGLAYIDVKQLKRSEIIKGIDGQQWIFTTRQKTNTASRIPLLTQ 300

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
             + I +Y        +++  LP+        L+      Y++++    G+    T H  
Sbjct: 301 ASEIIQKYKHHPEC-ADMDKVLPV--------LSNQKMNSYLKEIADICGINKELTFHIA 351

Query: 266 RHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           RH+FAT + L+NG  + S+  +LGH  + TTQ Y  +      + M 
Sbjct: 352 RHTFATSVTLANGVSIESVSKMLGHKNIRTTQHYAKILDSKVSEDMQ 398


>gi|228987438|ref|ZP_04147558.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228772410|gb|EEM20856.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 319

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 62/298 (20%), Positives = 117/298 (39%), Gaps = 19/298 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           VS E     +++L   + + G +  TLQ Y  D R  L  +  + E K     + +L+  
Sbjct: 14  VSQENKNLVKDFLIEKKAQ-GKAASTLQQYHWDLRIILFLIHEHFENK----NLIELTRK 68

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRN-LKKSNSLP 126
           +IR      +  ++ +  +   +S ++S L++  +        +    +R   K      
Sbjct: 69  DIRNLSIIFQEMEMSNARVNGLMSALRSALEFCAEDDDYEYEFNVGSRVRGLPKNPVREI 128

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             + E+Q   L+D ++              +  L L Y    R +E   +  + + +   
Sbjct: 129 TFITEEQIEWLIDELIAQEK-------YMLATYLALSYYSAARKNEVYQVQKEGLTEQYY 181

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           T  ++GK  K   +   P V+K I  Y +    D   ++ + +++    K LN  VF  +
Sbjct: 182 TNVVRGKRGKKFRLYYNPRVQKCIRLYINQRGKDTIPDLFVRVYKNGGRKHLNKSVFNYW 241

Query: 247 IRQLRRYL----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            +   + L    G       H  RHS   +L   G  L  ++S+  H  +STTQ Y  
Sbjct: 242 CKIFAKMLYEKEGKEFKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSYLK 299


>gi|150006223|ref|YP_001300967.1| transposase [Bacteroides vulgatus ATCC 8482]
 gi|149934647|gb|ABR41345.1| transposase [Bacteroides vulgatus ATCC 8482]
          Length = 412

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 61/288 (21%), Positives = 114/288 (39%), Gaps = 22/288 (7%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSLK 89
             K TL +Y+       +F+              +L    IR ++      + +   +++
Sbjct: 129 YKKGTLPNYQYTRLTLGLFVKKRYG--TDDVAFGELDEQFIREYMDFCLDERGLALDTVR 186

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             L+ +K   +   K   +   + ++ +  +K  + P+AL  +  L + D   L      
Sbjct: 187 HYLAILKKTCRIAFKAGHSERYHFMHFKLPQKKENPPKALTREDFLKIRD---LEIPERR 243

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGDKI-RIVPLLPS 205
           K +       L+  Y  G   ++ +S+T +N+  D+     L+   K +K+   V LLP 
Sbjct: 244 KSLALTRDLFLFACY-TGTAYADTVSITEENLFRDEEGSLWLKYHRKKNKMLARVKLLPE 302

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
               + +Y D     L    +  + RG            + +R L    G+ +    H  
Sbjct: 303 ALAMLEKYKDPTRPTLLPPQEFRVLRGNM----------KSLRVLSGISGISMDLVYHVG 352

Query: 266 RHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           RHSFA+ + L  G  + +I  +LGH  + TTQIY  V  K   + M +
Sbjct: 353 RHSFASLVTLEEGVPIETISRMLGHSNIQTTQIYARVTPKKLFEDMDK 400


>gi|324006765|gb|EGB75984.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 57-2]
          Length = 326

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 98/251 (39%), Gaps = 36/251 (14%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR---SLSGIKSFLKYLKKRKITTESN 112
             +    + +L+   I    S+R    I   ++ R    LSG+  F   +K  +   E+ 
Sbjct: 91  RALGDPAVNRLNKRMIAQHRSQRLEDGISAATINRDIYRLSGM--FSTLIKLEEFRKENP 148

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
              +  LK++      L + +   L+D            +   +  +  L    G R  E
Sbjct: 149 CKGLEPLKEAPPAMTYLAKSEISKLLDT-----------LTGDDRRVALLCLSTGARWGE 197

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
             +L  + +   + T  ++ K  K R VP+   + K I             +   PLF  
Sbjct: 198 GSTLRGEQVNHGRVTF-LKTKNGKKRTVPISEELEKEI-----------KTSDTGPLF-- 243

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                ++   F   +RQ+     LP     H LRH+FA+  + NGG++ ++Q ILGH  +
Sbjct: 244 ----KVDYENFCERLRQV--KPDLPRGQATHVLRHTFASWFMMNGGNIIALQQILGHASI 297

Query: 293 STTQIYTNVNS 303
             T +Y ++  
Sbjct: 298 QQTMVYAHLAP 308


>gi|169834527|ref|YP_001695426.1| phage integrase family site specific recombinase [Streptococcus
           pneumoniae Hungary19A-6]
 gi|168997029|gb|ACA37641.1| site-specific recombinase, phage integrase family [Streptococcus
           pneumoniae Hungary19A-6]
          Length = 377

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/333 (15%), Positives = 114/333 (34%), Gaps = 54/333 (16%)

Query: 12  FELLKERQNWLQNLEIERGLSK-LTLQS-YECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +ELLKE ++ + +    R  S   T  + Y    + +             +  + +L+Y 
Sbjct: 67  YELLKE-EDSINH----RKASYINTQDNNYNKHIKDYFSM----------VDNVGKLTYE 111

Query: 70  EIRAFISKRR-------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +I  F    R        + +   ++ + +  +K       ++   T +    ++ L   
Sbjct: 112 DIYQFREHLRQKVAKNSDKPLSTNTINKIMILLKKIFDVGLRKGYYTSNPANLIKKLPIE 171

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            +  +    K+    +              +     +  +L+  GLR+ EAL+LT Q+I 
Sbjct: 172 KTKMQFWTVKEFQHFLTLFETE--------EYNIKLLFTVLFFTGLRLGEALALTWQDID 223

Query: 183 DDQSTLRIQG---------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
              +T+ I                      R + +   +   + ++       L      
Sbjct: 224 FTSNTIHITKSVYVNKGISHVSTTKTKAGTRRIIINKKLSHELQQWQQKQKHLLEQFTSD 283

Query: 228 PLFRGIRG---KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
            +   +       +     +   +++            H  RHS A+ L++ G D   ++
Sbjct: 284 SMTLQVFQGSPITITKNAVENQYKKILERDSTLKKIRIHDFRHSHASLLINQGEDYLVVK 343

Query: 285 SILGHFRLSTT-QIYTNV---NSKNGGDWMMEI 313
             LGH  ++TT   Y+++     K+  D + E+
Sbjct: 344 ERLGHASITTTIDTYSHLYPSKQKDLADKLDEL 376


>gi|224371854|ref|YP_002606020.1| Phage integrase family protein [Desulfobacterium autotrophicum
           HRM2]
 gi|223694573|gb|ACN17856.1| Phage integrase family protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 360

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 56/302 (18%), Positives = 106/302 (35%), Gaps = 44/302 (14%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q WL + ++    S  T   YE  T+                  I Q++   +  FI+ R
Sbjct: 66  QEWLDHKKMNIRAS--TWAVYEGHTKNHFPEFKNLK--------IHQITIQRVEKFITDR 115

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK------SNSLPRALNEK 132
           +   +   +L++ L  ++       KR     + +      K            + L   
Sbjct: 116 QAAGMNLSTLRKILVSLRQIFNLAVKRGYCPRNPLDYADMPKSQGEETDGADKIQILTHD 175

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ- 191
           Q    ++ V           + +   +  L    G R  E L L   +I+   S + IQ 
Sbjct: 176 QITAFLEVV----------TEQKYHVLFSLAIFSGARQGELLGLKWSDILWGDSQIHIQR 225

Query: 192 ----------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
                           R + + P + K + ++   CP          +F   +G P+N  
Sbjct: 226 SFNNQRFYDTKTKGSNRKIDIGPVMLKKLKKWRLACP----PGGLDLVFPTAKGNPMNHN 281

Query: 242 -VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYT 299
            +  RY     +   L      H +RH++A+ L+  G +++ IQ+ LGH   + T  +Y 
Sbjct: 282 NMVNRYFLPGLKAAKLER-IRFHDMRHTYASLLIDQGENIKYIQAQLGHSNPTVTLNVYA 340

Query: 300 NV 301
           ++
Sbjct: 341 HL 342


>gi|315303917|ref|ZP_07874379.1| tyrosine recombinase XerD [Listeria ivanovii FSL F6-596]
 gi|313627714|gb|EFR96385.1| tyrosine recombinase XerD [Listeria ivanovii FSL F6-596]
          Length = 73

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 49/77 (63%), Gaps = 4/77 (5%)

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           + ++ + +  G+    T HTLRHSFATHLL NG DLRS+Q +LGH  +STTQIYT+V   
Sbjct: 1   KILKGIAKESGIEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKL 60

Query: 305 NGGDWMMEIYDQTHPSI 321
                + ++Y Q HP  
Sbjct: 61  R----LKDVYKQFHPRA 73


>gi|304440288|ref|ZP_07400178.1| transposase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|313888848|ref|ZP_07822509.1| site-specific recombinase, phage integrase family [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|291166665|gb|EFE28711.1| transposase [Filifactor alocis ATCC 35896]
 gi|304371337|gb|EFM24953.1| transposase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|312845217|gb|EFR32617.1| site-specific recombinase, phage integrase family [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 405

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 106/295 (35%), Gaps = 35/295 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +   T++K+  ++I  +  ++ + +  +        +++      +++      +     
Sbjct: 110 MDILTKDKLGARSIDSIKPSDAKEWAIRMSEDGYAYQTINNYKRSLRASFYIAIEDDCVR 169

Query: 110 ESNI-LNMRNLKKSNSLPRA-LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     +  +   +++P+  L  +Q   L+      +  +     ++N   + +L   G
Sbjct: 170 KNPFDFQLNTVIDDDTVPKVALTTEQEEKLL------SFAKADKTYSKNYDEILILLKTG 223

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAIL 211
           LRISE   LT  ++  +   +++                       R VP++    +A  
Sbjct: 224 LRISEFGGLTLPDLDFENRLVKVDHQLLRDTENGYYIETPKTKSGERQVPMVEEAYQAFQ 283

Query: 212 EYYDLCPFDLNL---NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTA 262
                      +        LF   +  P     +   ++ L +         LP   T 
Sbjct: 284 RVLANRKNRKCVVIDGYSNFLFLNGKDYPKVASDYNGMLKNLVKKYNKYHEDKLP-HITP 342

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQ 316
           H LRH+F T+  + G + +++Q I+GH  ++ T   Y +    +    M  +  +
Sbjct: 343 HILRHTFCTNYANAGMNPKALQYIMGHANINMTLNYYAHATFDSAMAEMNRLEKK 397


>gi|229016968|ref|ZP_04173889.1| Integrase [Bacillus cereus AH1273]
 gi|229027048|ref|ZP_04183355.1| Integrase [Bacillus cereus AH1272]
 gi|229113453|ref|ZP_04242903.1| Integrase [Bacillus cereus Rock1-15]
 gi|229160670|ref|ZP_04288663.1| Integrase [Bacillus cereus R309803]
 gi|228622805|gb|EEK79638.1| Integrase [Bacillus cereus R309803]
 gi|228669971|gb|EEL25364.1| Integrase [Bacillus cereus Rock1-15]
 gi|228734242|gb|EEL84929.1| Integrase [Bacillus cereus AH1272]
 gi|228744328|gb|EEL94409.1| Integrase [Bacillus cereus AH1273]
          Length = 364

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 65/335 (19%), Positives = 132/335 (39%), Gaps = 43/335 (12%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-----------EKITIQTIRQLSYTEI 71
           + +E++  LS  TL  Y  +  +F  ++                 +I I+ +  L   E+
Sbjct: 29  EYIEMKAMLSPATLYGYITEFEKFFKWMIEKRIAVINGNVATEIHEIPIELLESLPLNEV 88

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALN 130
             F    + + I  +++ R+ S +KS  KYL ++      N    RN+     L +  ++
Sbjct: 89  NRFHMYLKGEGIEIKAINRTFSALKSLFKYLSQKTEDEYGNSYLSRNVMDKIELHKEKID 148

Query: 131 EKQALTLVDNVLLHTSHETKWI-------------------------DARNSAILYLLYG 165
                  V N++ + + +  ++                           R+ A++ L+ G
Sbjct: 149 AAARADDVANMIFNNNDDAAFLRFLANDYEFILKETSTRKYNYFLRDKERDIALISLILG 208

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
            GLR+SE  SL+  ++   Q T+++  KG+K   +    S    + EY  +         
Sbjct: 209 TGLRVSELASLSLSSVNFRQKTIKVIRKGNKKSSILATQSSLDDVQEYLKVRQERYGCPP 268

Query: 226 QLPL-FRGI---RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
           +  + F      +   L+    Q  + +           + H LRH++AT+      DL 
Sbjct: 269 EEEIMFVTRYQGKYTQLSVRAIQNLVDKYTSA--FDEKRSPHKLRHTYATNHYKENKDLV 326

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            ++  LGH  +  T IYTN+N++   + +  +  +
Sbjct: 327 LLRDQLGHTSVEVTSIYTNINNEKKREAIDRLEKR 361


>gi|15808369|gb|AAL08410.1|AF252852_3 unknown [Prevotella loescheii]
          Length = 418

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 57/305 (18%), Positives = 114/305 (37%), Gaps = 27/305 (8%)

Query: 16  KERQNWLQNLE--IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           + +QN+++  +   ++  S  +L S + +  +  + L  +  + +    I      + + 
Sbjct: 125 RLQQNFIKYFDKVADKRHSNSSL-SIQTNWERVHVLLKMFAGDTLLFSQIDNRLAEDFKF 183

Query: 74  FISKR-----RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           F+        +   I   +     S  K+ LK        T      ++ +++  S    
Sbjct: 184 FLLSAPCGGSKKGTISRNTASTYFSIFKAALKQAFIDGYLTIDLSAKIKGIQEQESRREY 243

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L   +      N L +T  E   +  + +A+   L   GLR  +   L  + I  + +  
Sbjct: 244 LTLDEL-----NKLANTPCERDVL--KRAALFSAL--TGLRHCDIQKLRWKEIAIEGNQA 294

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           ++     K + V  +P   +A     +    +  +   LP          NP    R +R
Sbjct: 295 KLLFTQKKTKGVEYMPISEQAFKLCGEPRQPEQLVFEGLP----------NPSWISRPLR 344

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                 G+    + H  RH+FAT  L+NG D+ ++  +LGH  + TTQ+Y  V  +    
Sbjct: 345 AWIEKAGIQKHLSFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKVVDEKKNK 404

Query: 309 WMMEI 313
               I
Sbjct: 405 AANAI 409


>gi|10954580|ref|NP_052169.1| SsrA [Methanosarcina acetivorans]
 gi|1763610|gb|AAB39744.1| SsrA [Methanosarcina acetivorans]
          Length = 314

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 55/307 (17%), Positives = 109/307 (35%), Gaps = 34/307 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           RG SK T++ Y    + FL                    + E+  F+   R ++     +
Sbjct: 32  RGYSKRTIEGYVSHAKFFLQMCGVNAG------------FPELEGFLVHIRDERQYTLAT 79

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
                + + +F  +L+ + I   +NI   R  K+     +  +  +   L+    +    
Sbjct: 80  CNNYFASLSTFFDFLEFKHIIERNNIPTFR--KRYLRSYKKYHTPETRQLITIEDMAKLV 137

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK-GDKIRIVPLLPSV 206
           +         A++  L   G+R +E ++L   +I  ++ T+R++       RIV      
Sbjct: 138 KVPR-YPMYQALIIFLAKTGIRRNELITLDRADIDLEKCTVRLKKTAKRSNRIVFFDLET 196

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLG-------LPL 258
           +  +  Y +        + +  LF G +    +   +    +      +G       L  
Sbjct: 197 KAFLEAYLNTRH-----DKEKALFIGRQNGHRVQRNLVYDIVTSAASSIGLHNPEGRLEE 251

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             T H  RH F T L  +G +   IQ + G  R     +Y ++      D + E Y +  
Sbjct: 252 HFTPHCCRHWFTTWLRRSGMERTFIQELRGDSRGEAIDVYDHI----EKDELREAYLKCI 307

Query: 319 PSITQKD 325
           P +  K 
Sbjct: 308 PQLGIKP 314


>gi|167762101|ref|ZP_02434228.1| hypothetical protein BACSTE_00451 [Bacteroides stercoris ATCC
           43183]
 gi|167700060|gb|EDS16639.1| hypothetical protein BACSTE_00451 [Bacteroides stercoris ATCC
           43183]
          Length = 406

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 58/286 (20%), Positives = 112/286 (39%), Gaps = 26/286 (9%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSLKRSL 92
            T+Q YE  TR    F+    E +++   +  L    I  F +  +  +     S    L
Sbjct: 132 KTVQRYETTTRYLEEFIK--KEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSAITRL 189

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +K  ++   +     +      R  K   + P  L   +   ++      T   T   
Sbjct: 190 KNLKKIIRIALENDWIKKDPFAYYR-FKLEETDPEFLTMDKIKIII------TKEFTIKR 242

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQG---KGDKIRIVPLLPSVRK 208
             +   +       GL  S+   L+P++++ D++  L I+    K   +  +P+LP    
Sbjct: 243 VEQVRDVFVFCIFTGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPMAAS 302

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            + +Y ++      L   LP+    R           Y++++    G+  + + HT RHS
Sbjct: 303 ILEKYKNVAECTGKL---LPVLCNQRM--------NSYLKEIADVCGIHKNLSTHTARHS 351

Query: 269 FAT-HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +AT   L+NG  + ++  +LGH   S T+ Y  V  +N    M ++
Sbjct: 352 YATSICLANGVSMENVAKMLGHADTSVTKHYARVLDQNIFKDMQKV 397


>gi|160933881|ref|ZP_02081268.1| hypothetical protein CLOLEP_02743 [Clostridium leptum DSM 753]
 gi|156866554|gb|EDO59926.1| hypothetical protein CLOLEP_02743 [Clostridium leptum DSM 753]
          Length = 419

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 52/301 (17%), Positives = 110/301 (36%), Gaps = 55/301 (18%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRT------QKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111
           I    I Q+    ++  I    +      +    R+L    S  +   +   + +I   +
Sbjct: 125 IGDMPISQIKTANVQNIIFDLSSLNRWTGKPTAKRTLVEYRSVCRQVFQLAIENRIIDYN 184

Query: 112 NILNMR----NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
              +++     LKK     RAL+ ++        +++T H  +       A + +++  G
Sbjct: 185 PASSVKIVSNQLKKER---RALSVEE-----QGWIINTPHRAQ------KAAMIMMFA-G 229

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK-------AILEYYDLCPFD 220
           LR  E + LT  +I  +  T+R+     K      + S  K         +    +    
Sbjct: 230 LRRGEVIPLTWNDIDFEAGTIRVNKSVFKEGTRFNIKSGAKTESGNRVVNIPQILIDFLK 289

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP--------------------LST 260
           L     + +    +   +    ++R      + L +                        
Sbjct: 290 LQPKDTILVCPDTKDVMMTETSWRRMWDSYIKDLNIKYGDLNGKRSKYDPKGVPITIPRI 349

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI--YDQT 317
           T H LRH+F T L  +G D+ + +  +GH  + TT  IYT+++ ++  + + ++  Y +T
Sbjct: 350 TPHWLRHTFCTLLYLSGTDVLTAKEQMGHSDIKTTLGIYTHLDKEHKRNAVSKLNEYIET 409

Query: 318 H 318
           H
Sbjct: 410 H 410


>gi|300992559|ref|ZP_07179926.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 200-1]
 gi|732682|emb|CAA85726.1| FimE protein [Escherichia coli]
 gi|1816486|emb|CAA71840.1| FimE recombinase [Escherichia coli]
 gi|300305300|gb|EFJ59820.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 200-1]
 gi|324012903|gb|EGB82122.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 60-1]
          Length = 184

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 43/148 (29%), Positives = 62/148 (41%), Gaps = 1/148 (0%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAIL 211
            AR+  ++ L Y  G+RISE L L  Q++  ++  + I+  K     + PL    R+A+ 
Sbjct: 11  GARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVE 70

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
            +          +    +F   RG  L+     R IR      G    T  H LRH+   
Sbjct: 71  RWTQERANWKGADRTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGY 130

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            L   G D R IQ  LGH  +  T  YT
Sbjct: 131 ELAERGADTRLIQDYLGHRNIRHTVRYT 158


>gi|21234018|ref|NP_639595.1| putative DNA integrase/recombinase [Streptomyces coelicolor A3(2)]
 gi|21234332|ref|NP_639943.1| putative DNA integrase/recombinase [Streptomyces coelicolor A3(2)]
 gi|13620504|emb|CAC36541.1| putative DNA integrase/recombinase [Streptomyces coelicolor A3(2)]
 gi|13620819|emb|CAC36860.1| putative DNA integrase/recombinase [Streptomyces coelicolor A3(2)]
          Length = 408

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 98/260 (37%), Gaps = 25/260 (9%)

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-------PR-ALNEKQ 133
                ++  +LS +  F  +         +N + + + ++  +L       P+  L   +
Sbjct: 139 GYAPTTINHALSVVSGFYAFHAHYGRGPVANPVPV-SPQRRRALSHLSPLEPKPVLGRAR 197

Query: 134 ALTLVDNVLLHTSHETKWIDAR-------NSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
               V      +  +  W +         + A+L      G R  E L +   +I   + 
Sbjct: 198 LRQKVTGRPPRSIPDPLWDELFAAMGCERDRALLDCYVSSGARAEELLGVETGDIHWAKP 257

Query: 187 TLRIQGKGDKIRI-VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVF 243
            L +  KG + R  VP+ P     +  Y D            P++R      +PL     
Sbjct: 258 GLYVITKGTRERELVPISPEACVRLARYLDSTG---TPEAGEPVWRTRHGEDRPLTYWAM 314

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVN 302
           +R ++  R    L  + T H LRH+ A  + + G   L  +Q++L H  + TT  Y  V 
Sbjct: 315 RRVVQ--RAQQNLRTNWTLHDLRHTAAHRMANGGKLTLPEVQAVLRHANIQTTSRYLAVR 372

Query: 303 SKNGGDWMMEIYDQTHPSIT 322
            +   D ++E Y+Q  P ++
Sbjct: 373 VEEIFDALLEHYNQPRPQVS 392


>gi|167628726|ref|YP_001679225.1| phage integrase [Heliobacterium modesticaldum Ice1]
 gi|167630973|ref|YP_001681472.1| phage integrase [Heliobacterium modesticaldum Ice1]
 gi|167591466|gb|ABZ83214.1| phage integrase [Heliobacterium modesticaldum Ice1]
 gi|167593713|gb|ABZ85461.1| phage integrase [Heliobacterium modesticaldum Ice1]
          Length = 328

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 112/291 (38%), Gaps = 25/291 (8%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSF 98
           Y  +  Q   F  F  E+KIT  T   L+      +I KR  +    +S     S I+ F
Sbjct: 30  YGAEEHQLRRFDVFCVEQKITEPT---LTKELTEQWIEKRAGE--AAKSQHLRCSAIRQF 84

Query: 99  LKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQALTLVDNVLLHTSHE-TKWIDARN 156
             +L    +   + +L +R    S S  P   + ++   +       T    + +I    
Sbjct: 85  ALFLSSCGL--AAYVLPVRKNTVSQSYAPYIFSAEELKAIFHAADQMTPCTVSPFIHEVM 142

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYD 215
             IL LLYGCGLR +EA  L   ++  D   L I   K +K R+VP+  S+      Y  
Sbjct: 143 PMILRLLYGCGLRSAEACHLKKCDVSLDDGVLTILNAKNEKDRLVPMSDSLADRCRAY-- 200

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-----LSTTAHTLRHSFA 270
               +L        F    G  + P     + R+     G+           H LRH+FA
Sbjct: 201 SERMELLCPDTAYFFPNKYGGCVEPFTIYPWFRRFLFEAGISHHGRGKGPRVHDLRHTFA 260

Query: 271 THLLSN----GGDLR----SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            H L      G DL     ++   LGH  +S T+ Y  + +    + + ++
Sbjct: 261 VHSLRKMAGDGMDLYCALPALSMYLGHENISATEKYLRMTAAVHPEILGQL 311


>gi|153855553|ref|ZP_01996669.1| hypothetical protein DORLON_02687 [Dorea longicatena DSM 13814]
 gi|166030341|ref|ZP_02233170.1| hypothetical protein DORFOR_00002 [Dorea formicigenerans ATCC
           27755]
 gi|240145460|ref|ZP_04744061.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
 gi|149751974|gb|EDM61905.1| hypothetical protein DORLON_02687 [Dorea longicatena DSM 13814]
 gi|166029861|gb|EDR48618.1| hypothetical protein DORFOR_00002 [Dorea formicigenerans ATCC
           27755]
 gi|257202433|gb|EEV00718.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
 gi|291563120|emb|CBL41936.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4]
          Length = 412

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 46/305 (15%), Positives = 104/305 (34%), Gaps = 59/305 (19%)

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
            + I    +  +   +I+  I+    Q     S++ +L  ++  L+  K  +I   +   
Sbjct: 100 GKAIGNMKVTDIRNLDIQRVINDMNKQGRASSSMRDALGRVRECLESAKNNRIIDINPCF 159

Query: 115 NMRNL---KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
            +      K +    R L+  +    +  V  +              + Y+++  G+RI 
Sbjct: 160 EINVPWENKTAER--RFLSMAEQTRFLQEVEHN----------WYKEMFYIMFLTGMRIG 207

Query: 172 EALSLTPQNIMDDQSTLRIQ-------------------GKGDKIRIVPLLPSVRKAIL- 211
           E   L  ++I  ++  + IQ                      +  R +P +    + +L 
Sbjct: 208 EVGGLKWEDIDWNKKCINIQRSLSCQYENGVKTMRLTKPKTHNSYRSIPFMAETEEILLS 267

Query: 212 --------EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP------ 257
                   +      +  +      +F    G P+   V ++ I+++ + +         
Sbjct: 268 QKEKQNRQKKAYGNRWRSSGEFDNLVFTTSLGSPVIRNVAEKEIKKVVKAINFQEAIEAV 327

Query: 258 ---------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGG 307
                         H +RH+F +     G D + +Q ++GH   STT  IYT+V      
Sbjct: 328 KENREPIEFKDLYPHAIRHTFCSRCFEKGMDAKVVQMLMGHQHYSTTIDIYTHVTETKFE 387

Query: 308 DWMME 312
           + + +
Sbjct: 388 EEIAK 392


>gi|237713490|ref|ZP_04543971.1| tyrosine type site-specific recombinase [Bacteroides sp. D1]
 gi|262407276|ref|ZP_06083824.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229446472|gb|EEO52263.1| tyrosine type site-specific recombinase [Bacteroides sp. D1]
 gi|262354084|gb|EEZ03176.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 419

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 51/271 (18%), Positives = 98/271 (36%), Gaps = 24/271 (8%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR-----SLSGIKSF 98
           R + + L F   + +    I      + R F+           ++ +       +  K+ 
Sbjct: 156 RVYALMLIFTDNQPMIFANIDTKLVEDFRLFLLDAPQGGNKKGTISQNTASTYFAIFKAG 215

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           LK               ++ +K+  +    L  ++   LV     + + +        +A
Sbjct: 216 LKQAFVDGYFVSDIAAKIKGIKEKEARREHLTLEELNRLVCTPCDNATIKR-------AA 268

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +   L   GLR  + + +T + +  + +  RI     K + V  +P   +A     +   
Sbjct: 269 LFSAL--TGLRHCDIMKMTWKELTKEGTHYRINFDQKKTKGVEYMPISEQAYDLCGEPGH 326

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
            D  +   LP           P    + + +     G+    T H  RH++AT  LSNG 
Sbjct: 327 PDQLVFEGLPA----------PSWISKPLARWIEASGITKHITFHCFRHTYATLQLSNGT 376

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           DL ++  +LGH  + TTQ YT V  +   + 
Sbjct: 377 DLFTVSKMLGHTNVRTTQRYTKVVDEKKENA 407


>gi|194462977|ref|NP_777346.2| hypothetical protein IN93_gp29 [Thermus phage IN93]
 gi|194077333|dbj|BAC55308.2| unnamed protein product [Thermus phage IN93]
          Length = 349

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 53/318 (16%), Positives = 114/318 (35%), Gaps = 38/318 (11%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +P+     L     +W+++    R L   TL++Y    +           E I    + +
Sbjct: 17  VPDPSGLRLGDYLASWIEHRAATRDLRPTTLRNYHVYLKHV---------EPIAHLPLSR 67

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           L+    RAF ++           +     +++ L+   +  +  ++ +  +   +     
Sbjct: 68  LTPLTFRAFFAELA--GFSPSHRRHIYQFLRAALRDAMRADLLDQNPMDAVDPPRGGAVR 125

Query: 126 P-RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           P +A   ++    ++    H  +           +  L+    LR  EAL+L  ++   D
Sbjct: 126 PAKAWKPEEVARFLEASKGHRLYP----------LFALMLATRLRPGEALALRWEDWEGD 175

Query: 185 ----QSTLRIQG-----KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LF 230
               + TLR  G     K         L    +A+L ++     +   +         +F
Sbjct: 176 VLHVRHTLRRDGTLGPAKTPGSVAPIYLDPDTQALLAWWRERLEEEKASTPDWQDHGLMF 235

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
              +G PL    F+R    L+   G+    T H LRH++ +  L  G   + + + L H 
Sbjct: 236 PSSKGTPLEYNNFKRAFYALQEKAGVSR-ITPHGLRHTYTSLALRAGLPPKVVAARLRHA 294

Query: 291 RLS-TTQIYTNVNSKNGG 307
             + T ++Y  +  ++  
Sbjct: 295 DPTFTVKVYQQLMEEDHR 312


>gi|152971804|ref|YP_001336913.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150956653|gb|ABR78683.1| recombinase involved in phase variation; regulator for fimA
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 201

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 67/173 (38%), Gaps = 8/173 (4%)

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L + +  +L+       + +T    ARN  +  L +  GLR SE   L   +I      
Sbjct: 12  FLTQNEIESLL------KAADTGPYAARNYCLTLLCFIHGLRASEICRLRISDIDLAARC 65

Query: 188 LRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           + I   K       PLL     A+  +  +         +  LF   +G PL+   F + 
Sbjct: 66  VYIHRLKKGFSTTHPLLDKEIYALKRWLAIRSSWPQAASE-WLFLSRKGNPLSRQQFYQI 124

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           I       GLPL    H LRHS    L + G D R IQ  LGH  +  T  YT
Sbjct: 125 IASSGGLAGLPLEIHPHMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYT 177


>gi|327390069|gb|EGE88413.1| phage integrase family protein [Streptococcus pneumoniae GA04375]
          Length = 177

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 67/167 (40%), Gaps = 8/167 (4%)

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
                + R+ AI+ LL   G+R+ E + L   +I  +     + GKG K R V      +
Sbjct: 14  RDNCENLRDLAIIDLLASTGMRVGELVQLNRSDIDFENRECVVFGKGKKERPVYFDARTK 73

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGI--RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
             +  Y +        +    LF  +  + + L     +  +R+L   LG+      H  
Sbjct: 74  IHLRNYLNDR-----KDSHPALFVTLVGKAQRLGIAGVEIRLRKLGDKLGIQK-VHPHKF 127

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           R + AT  +  G  +  +Q +LGH ++ TT  Y  VN  N      +
Sbjct: 128 RRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYAMVNQNNVKHSHQK 174


>gi|57506012|ref|ZP_00371936.1| site-specific recombinase, phage integrase family [Campylobacter
           upsaliensis RM3195]
 gi|57015812|gb|EAL52602.1| site-specific recombinase, phage integrase family [Campylobacter
           upsaliensis RM3195]
          Length = 314

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 66/307 (21%), Positives = 113/307 (36%), Gaps = 26/307 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +  + +     S  T+  YE    +F  +   + +E       +++    I  F+  
Sbjct: 16  LEAYFSHFKAL-NYSNNTIMLYERVLNEFREYSLDFQDE----IEFKEIKSAYILNFLGY 70

Query: 78  RRTQKIGDRSLKR------SLSGIKSFLKYLKKRKITTESNILNMRNL-----KKSNSLP 126
             T+                L  I SF  ++ +          N   L     K+   L 
Sbjct: 71  LETKSKNINKKLSKKTKLTYLRVITSFFTFINENNEDLFEFSFNFSKLNTRNEKREEKL- 129

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             LN+ +   L++ +      +  +   RN+ ++ L+   GLRISEAL +   +  +D+ 
Sbjct: 130 EYLNDDEIQRLINVLEQQKIKKDDYASFRNAFLIKLMLYAGLRISEALRVRLCDFSEDEE 189

Query: 187 ---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
               +RI  KG K +            L+Y     F  +L  Q  + +   GK LN    
Sbjct: 190 DMLKIRIFAKGAKEQFAYAKKDYIDDELDY-----FKEHLKEQDYIMQTNTGKLLNRSNA 244

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              + ++     +      H LRHS A  L S   +L  IQ IL H  + TT IY   NS
Sbjct: 245 FIIVNRIYAKALINKK-GLHLLRHSLAMKLTSQNINLVVIQKILRHTSMQTTTIYAKANS 303

Query: 304 KNGGDWM 310
           +     +
Sbjct: 304 EMVRKAL 310


>gi|320173114|gb|EFW48332.1| Integrase [Shigella dysenteriae CDC 74-1112]
          Length = 375

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 101/257 (39%), Gaps = 29/257 (11%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNIL 114
           E +    + +L+ T +      R  Q I   ++ R +  + +    L        ++ + 
Sbjct: 140 EAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAMFTALISSGHFLNDNPVQ 199

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            ++ +K +      L++ + + L+D  L     E           + +L   G R  E  
Sbjct: 200 GLKGMKVNEREMGYLSKSECVQLLDA-LAENPDE--------RLAVEILLSTGARWGEVA 250

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +L  + ++  + T   + K  K R VP+  S+ + I                  +F    
Sbjct: 251 ALEQRRVLHCRITFS-KTKNSKNRTVPISESLFEKI-----------KKRGGKLVFPT-- 296

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              L+  + +  I+ +     +P     H L H+FA+H + NGG++ ++Q ILGH ++ T
Sbjct: 297 ---LDYSLVRDVIKTVA--PDVPDGQAVHALHHTFASHFMMNGGNILTLQKILGHAKIQT 351

Query: 295 TQIYTNVNSKNGGDWMM 311
           T IY ++      D   
Sbjct: 352 TMIYAHLAPDYLQDAAR 368


>gi|226349701|ref|YP_002776815.1| putative integrase/recombinase [Rhodococcus opacus B4]
 gi|226349753|ref|YP_002776867.1| putative integrase/recombinase [Rhodococcus opacus B4]
 gi|226245616|dbj|BAH55963.1| putative integrase/recombinase [Rhodococcus opacus B4]
 gi|226245668|dbj|BAH56015.1| putative integrase/recombinase [Rhodococcus opacus B4]
          Length = 409

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 62/348 (17%), Positives = 113/348 (32%), Gaps = 74/348 (21%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR----------- 78
           G ++ TL+SY  D  ++  FL        T     + +  E R F               
Sbjct: 56  GRAESTLRSYGMDLLRWFRFL-----WSDTGVAWDRATRVEARDFCRWMQVAGKQPRPHW 110

Query: 79  ------------RTQKIGDRSLKRSLSGIKSFLKYLKK-------------------RKI 107
                       R Q         S + ++SF  + +                    R  
Sbjct: 111 RASGAALSSKPARGQAFAPSVRAHSETVLRSFYDFHRDAGTGPIINPFPLDRSRRAGRAH 170

Query: 108 TTESNILNMRN-------LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
              + +    N        K    +PR++ + +   +            +    R+ A++
Sbjct: 171 AHHNPMEQHGNERSGRYRPKVPRRVPRSVPDSEFNEIF----------ARLPSHRDRALI 220

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI-RIVPLLPSVRKAILEYYDLCPF 219
                 G R SE LS T   +   +  + +  KG +  + +P        +  Y      
Sbjct: 221 AFYVSTGARASELLSTTLAGVDPGRQLITVVRKGTRELQELPASTDAFVWLRLYQVEMAD 280

Query: 220 DLNLNIQLPLFRGIRGK--PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            +    + PL+  +R    PL      R   ++ +  G   S T H LRH+    +  + 
Sbjct: 281 LIPKGRRQPLWWTLRRPARPLTYHAVHRMFERVNQQAG--TSVTLHALRHTATYRMAEDP 338

Query: 278 G-DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
              L  +Q +LGH +L+TTQIY    +    D +  +    H   T++
Sbjct: 339 ALPLTDVQFVLGHAQLTTTQIYL---TPRKEDVIRRVLA-HHAEQTRR 382


>gi|315225324|ref|ZP_07867138.1| phage integrase family site-specific recombinase [Capnocytophaga
           ochracea F0287]
 gi|314944597|gb|EFS96632.1| phage integrase family site-specific recombinase [Capnocytophaga
           ochracea F0287]
          Length = 267

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 108/289 (37%), Gaps = 38/289 (13%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           E  +++ T+ +Y      F       +++ + +           + ++     +    ++
Sbjct: 11  ESQMAENTITAYLYAVNDFYRKYKSLSKKNLLL----------YKTYLI----EHFKPKT 56

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNEKQALTLVDNVLLHT 145
           +   +  +  FL+++ K+K+        ++++K      L   +++   L L + +    
Sbjct: 57  VNLRIQALNKFLEHIGKQKL-------RLKSVKVQQRTYLENVISQADYLFLKEQL---- 105

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
               K  +     ++  L   G R+SE + +  +++        +  KG K+R + +   
Sbjct: 106 ---RKEENPMWYFVVRFLAATGARVSELIQIKVEHV--KIGYFDLYTKGGKVRRLFIPLQ 160

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHT 264
           +R+  +++               LF    G+ +      + ++      GL       H+
Sbjct: 161 LREETIKWLT-----KEQKTSGYLFLNRLGERITTRGIAQKLKLFAERYGLNSKVVYPHS 215

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            RH +A + L    D+  +  ++GH  + TT+IY    +      +  I
Sbjct: 216 FRHRYAKNFLEAFNDISLLADLMGHESIETTRIYLRRTASEQQAIVDRI 264


>gi|197302663|ref|ZP_03167717.1| hypothetical protein RUMLAC_01393 [Ruminococcus lactaris ATCC
           29176]
 gi|197298245|gb|EDY32791.1| hypothetical protein RUMLAC_01393 [Ruminococcus lactaris ATCC
           29176]
          Length = 377

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 47/293 (16%), Positives = 113/293 (38%), Gaps = 30/293 (10%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSF 98
           +    ++   L  + + ++   +   L+   I  F       +K+  ++++  L+ +   
Sbjct: 86  KSTLAKYHFMLENHIKPQLGDYSFTDLNSDIIADFSKDLLYQKKLSPKTVRDILTFVHKI 145

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           + Y++    +  S  + +   +      R L+ ++   L+   L+      K+       
Sbjct: 146 ISYIQAETNSNLS-SITISYPRLERKELRVLSAEEQQNLIQ-YLVQDFDIYKFS------ 197

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY----- 213
            + +    GLRI E  +L  ++I  +   L ++    +I+      S +K +L+      
Sbjct: 198 -VLIALFTGLRIGEVCALQWKDISVESGLLTVRHTVQRIKNPD-SDSAKKTLLQLGTPKT 255

Query: 214 ------------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
                                 +           + ++P   QR +++  + LG+     
Sbjct: 256 FSSARTLPVTNGLQKLFKLFQHDDPEAFILTGNHQFIDPRNLQRKLKKYTKDLGIQ-DVH 314

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
            HTLRH+FAT  +  G D++ +  +LGH  +STT   Y + +     + ++++
Sbjct: 315 FHTLRHTFATRCIEFGCDIKILSEMLGHSNISTTLNRYVHPSMDFKRENILKL 367


>gi|310827610|ref|YP_003959967.1| hypothetical protein ELI_2021 [Eubacterium limosum KIST612]
 gi|308739344|gb|ADO37004.1| hypothetical protein ELI_2021 [Eubacterium limosum KIST612]
          Length = 338

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/320 (15%), Positives = 118/320 (36%), Gaps = 36/320 (11%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           S  L    + W++    E  + + TL +Y+    ++L+        ++    +  ++   
Sbjct: 20  SVTLEAFSREWIRKRGDEGKIKESTLTNYQRIIERYLL-------PELGDLRLDTITVEV 72

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RAL 129
           ++ F+     + +   +++  +  + S ++   +  +  ++   ++   KK  +   + L
Sbjct: 73  VQDFVKTLERRALNTSTIRGIIGRLSSIMEKAVEAGLINKNPCGHIVIQKKWQTTTGKIL 132

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
             +    L   +L H  + +          + L    G+RISE  +L  ++I      ++
Sbjct: 133 TIEDQKALTHWLLAHEHNLS--------LAVQLGLFAGMRISEIAALQWKDIDLKNGFIQ 184

Query: 190 IQGKGDKIRIVP------------------LLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           ++    +++                            +IL           +  +  +  
Sbjct: 185 VRRNVQRVKNHDAGQRKTINQIGTPKSPKAFRSIPITSILMKSLKGYEKSTVKPEAFVIA 244

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
              G   +    QRY +++   L L  +   H LRH+FAT    +G D++ I  ILGH  
Sbjct: 245 KKGGSAYDVRTIQRYFKKIISVLKLD-NYRFHDLRHTFATRAKESGMDIQIISEILGHSE 303

Query: 292 LSTTQ-IYTNVNSKNGGDWM 310
            + T  IY ++   +    M
Sbjct: 304 TAVTMNIYLHITDLHKKQEM 323


>gi|217958134|ref|YP_002336678.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus cereus AH187]
 gi|217066379|gb|ACJ80629.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus cereus AH187]
          Length = 319

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 63/312 (20%), Positives = 118/312 (37%), Gaps = 22/312 (7%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           VS E     +++L   + + G +  TLQ Y  D +  L  +  + E K     +  L+  
Sbjct: 14  VSQENKNLVKDFLIEKKAQ-GKAASTLQQYHWDLQIILFLIHEHFENK----NLIDLTRK 68

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT--TESNILNMRN-LKKSNSLP 126
           +IR      +   + +  +   +S ++S L++           +    +R   K      
Sbjct: 69  DIRNLSITFQDMGMSNARVNGLMSALRSALEFCADDDDYNYEFNVGSRVRGLPKNPIREI 128

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             + E Q   L+D +L              +  L L Y    R +E   +  + + +   
Sbjct: 129 TFITEDQINWLIDELLEQEK-------YMLATYLALSYYSAARKNEVYQVRKEGLTEQYY 181

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           T  ++GK  K   +   P V+K I  Y +    D   ++ + +++    K LN  VF  +
Sbjct: 182 TNVVRGKRGKKFRLYYNPRVQKCIRLYINQRGKDAIPDLFVRVYKNGERKTLNKSVFNYW 241

Query: 247 IRQLRRYL----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +   + L    G       H  RHS   +L   G  L  ++S+  H  +STT+ Y    
Sbjct: 242 CKIFAKMLYEKEGKEFKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTESYLK-- 299

Query: 303 SKNGGDWMMEIY 314
                + + EI+
Sbjct: 300 -DRSEEDIAEIF 310


>gi|147669488|ref|YP_001214306.1| phage integrase family protein [Dehalococcoides sp. BAV1]
 gi|146270436|gb|ABQ17428.1| phage integrase family protein [Dehalococcoides sp. BAV1]
          Length = 368

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 61/319 (19%), Positives = 111/319 (34%), Gaps = 49/319 (15%)

Query: 14  LLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           L +  + WL   +     L+  T + YE   R+++I         +    + QL    I+
Sbjct: 67  LAEYLERWLKDYVWP--NLAPRTAEGYEHIIRRYII-------PGLGKIQLAQLKPEHIQ 117

Query: 73  AFISKR------RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
            + + +      +   +  R+++     + S LK   K ++   + +  +   +      
Sbjct: 118 KYYANQLSIGGDKGIGLSPRTVRHHHMCLHSALKTAVKWELLIRNPLDAIDPPRCQKHEM 177

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             L E+    +++             +     + YL    GLR SE L+L    +     
Sbjct: 178 HTLTEEAVHKVLEI----------ANETPYFTLFYLALFTGLRRSELLALKWSAVDLIMC 227

Query: 187 TLRI----------------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-----NLNI 225
            L +                       R V L PS  + + ++ D           +LN 
Sbjct: 228 QLSVSRSLHVLSGGEIITRQTKTARSTRSVALSPSTVQVLKDHRDKQQAFKILAGSHLNN 287

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
              +F  I GKPL P        +L R  GL      H  RH+ A+ +L  G   + +Q 
Sbjct: 288 DDFIFTNIDGKPLLPNTITHNWIKLIRKTGLN-GIRLHDARHTHASLMLKQGVHPKIVQE 346

Query: 286 ILGHFRLSTT-QIYTNVNS 303
            LGH  +  T   Y++V  
Sbjct: 347 RLGHSSIQVTLDTYSHVTP 365


>gi|298388102|ref|ZP_06997647.1| integrase [Bacteroides sp. 1_1_14]
 gi|298259132|gb|EFI02011.1| integrase [Bacteroides sp. 1_1_14]
          Length = 382

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 58/286 (20%), Positives = 116/286 (40%), Gaps = 26/286 (9%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSLKRSL 92
            T+Q YE  TR    F+    E +++   +  L    I  F +  +  +     S    L
Sbjct: 108 KTVQRYETTTRYLEEFIK--KEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSAITRL 165

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +K  ++   +     +      R  K   + P  L   +       ++L      K +
Sbjct: 166 KNLKKIIRIALENDWIKKDPFAYYR-FKLEETDPEFLTMDEIK-----IILAKEFTIKRV 219

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQG---KGDKIRIVPLLPSVRK 208
           +      ++ ++  GL  S+   L+P++++ D++  L I+    K   +  +P+LP    
Sbjct: 220 EQVRDVFVFCIF-TGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAAS 278

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            + +Y D+      L   LP+    R           Y++++    G+  + + HT RHS
Sbjct: 279 ILDKYKDVAECTGKL---LPVLCNQRM--------NSYLKEIADVCGIHKNLSTHTARHS 327

Query: 269 FAT-HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +AT   L+NG  + ++  +LGH   + T+ Y  V  +N    M ++
Sbjct: 328 YATSICLANGVSMENVAKMLGHADTNVTKHYARVLDQNIFKDMQKV 373


>gi|126434028|ref|YP_001069719.1| phage integrase family protein [Mycobacterium sp. JLS]
 gi|126233828|gb|ABN97228.1| phage integrase family protein [Mycobacterium sp. JLS]
          Length = 401

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 62/349 (17%), Positives = 113/349 (32%), Gaps = 76/349 (21%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           ++  + +LQ L  +   S  T+++Y           A++T  + T    R++S      F
Sbjct: 26  IRAAEEFLQFLRDDE-ASPNTVKAYAAGL------AAWWTVLEHTGTDWREISTGLFGQF 78

Query: 75  ISKRRTQKI-------------GDRSLKRSLSGIKSFLKYLKKRKITTES---------- 111
           ++  RT  +                S +   + + +  ++                    
Sbjct: 79  LAYLRTGDLPGTARIGAPQGWLSPASTQLRAAAVLACYRFHADAHGLAGPYQRLFTSRGK 138

Query: 112 -------NILNMRNLKKSNSLPR------------ALNEKQALTLVDNVLLHTSHETKWI 152
                   +L      +    P              L   Q   ++D     +  +    
Sbjct: 139 RYRSRYVPMLAGVGPPRVKDRPVYTVRQGNRAATPVLLPAQVSAILDGCATQSGQQWSGP 198

Query: 153 D--ARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRI----------QGKGDKI 197
           D   R+  +  +L   G+R+ EALSL  Q+          + +          +GK  + 
Sbjct: 199 DSGLRDRLLFAVLAETGMRLGEALSLRHQDFHIGSGATPFIDVAARQDHPRGVRGKALRA 258

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----------LFRGIRGKPLNPGVFQRYI 247
           R + +   + +A+   Y     D   ++ +P          L RG R  P  P      +
Sbjct: 259 RRIYIGDDL-EALYSAYVWHLVDRGADLVVPDLDTHFVFVNLVRGQRFAPTRPETVYAKV 317

Query: 248 RQLRRYL-GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             L      LP   T H LRH+ AT LL +G     +   LGH  + TT
Sbjct: 318 DSLTNRCPALPRQWTPHWLRHTHATALLLSGAPPHVVMRRLGHADIQTT 366


>gi|301057714|ref|ZP_07198787.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300448175|gb|EFK11867.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 345

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 51/301 (16%), Positives = 108/301 (35%), Gaps = 29/301 (9%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
                ++   +  +   K+    I Q+   +++ F  +   + + + S +   S +    
Sbjct: 48  RFTLERYKGTMVRHVYPKLGDHQIDQIKRRDLKVFFDRLLKKGMKESSFQLIKSPLSKIF 107

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           ++    ++   + +  + + K+ +   +   E QA   ++           +        
Sbjct: 108 QHAIDDELIQVNPLSGISHSKRRSIDIKPFTEDQAFLFLEA-------AKDYRKGVYYPH 160

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-----------KGDKIRIVPLLPS--- 205
              L   G+RI E L L  ++I      L ++            K  +IR V + P    
Sbjct: 161 FLTLLRTGVRIGELLGLQWKDIDFKSRELVLKRHIFQTTVMDATKNGQIRTVDMTPHLSE 220

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLF-RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             +A+ +   +             F  G + KP++    ++ + ++    GLP     H 
Sbjct: 221 TLRALKKEKQINALKFGRPFSEWCFSLGNKVKPMSMPPIRKAMFEILEKAGLPK-MRLHD 279

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTN-----VNSKNGGDWMMEIYDQTH 318
            RHS+AT  L  G D+  +   +GH  +  T  IYT+       ++     M     +TH
Sbjct: 280 FRHSYATIRLLKGHDIGDVSYQMGHSSIKVTFDIYTHWIPGKFKNQVDDLDMHPNAPKTH 339

Query: 319 P 319
           P
Sbjct: 340 P 340


>gi|238896396|ref|YP_002921134.1| tyrosine recombinase [Klebsiella pneumoniae NTUH-K2044]
 gi|238548716|dbj|BAH65067.1| site-specific recombinase involved in flagellar phase
           switching/type 1 fimbriae regulatory protein with FimE
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 201

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 67/173 (38%), Gaps = 8/173 (4%)

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L + +  +L+       + +T    ARN  +  L +  GLR SE   L   +I      
Sbjct: 12  FLTQNEIESLL------KAADTGPYAARNYCLTLLCFIHGLRASEICRLRISDIDLAARC 65

Query: 188 LRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           + I   K       PLL     A+  +  +         +  LF   +G PL+   F + 
Sbjct: 66  VYIHRLKKGFSTTHPLLDKEIYALKRWLAIRSSWPQAASE-WLFLSRKGNPLSRQQFYQI 124

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           I       GLPL    H LRHS    L + G D R IQ  LGH  +  T  YT
Sbjct: 125 IASSGGLAGLPLEIHPHMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYT 177


>gi|167621565|ref|YP_001672073.1| integrase family protein [Caulobacter sp. K31]
 gi|167351688|gb|ABZ74414.1| integrase family protein [Caulobacter sp. K31]
          Length = 268

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 75/197 (38%), Gaps = 22/197 (11%)

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
             +    +       L  ++ L  +D                   +L  L   G R SE 
Sbjct: 36  AGLSAPPERRGGVDRLTVEEELRFLDRAYAQGGRTG--------LMLQTLLETGARASEL 87

Query: 174 LSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
           + L  +++   +  + I+ GKG K R +P+   + + +          +      PLF  
Sbjct: 88  VQLRIEDVSLAERVVTIREGKGGKRREIPIRRDLAQLLQ-------LHIGARRAGPLFAS 140

Query: 233 IRG------KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
            +         L      + +R++ R  G+      H LRH+ AT LL+ G D+  +Q  
Sbjct: 141 RQQGSGPTPHVLTRQRIGQVVREVARDAGITKRVYPHLLRHTVATRLLALGMDITDLQRF 200

Query: 287 LGHFRLSTTQIYTNVNS 303
           LGH  ++TT++Y    +
Sbjct: 201 LGHESITTTRLYAETTA 217


>gi|94310185|ref|YP_583395.1| phage integrase [Cupriavidus metallidurans CH34]
 gi|93354037|gb|ABF08126.1| tyrosine-based site-specific recombinase [Cupriavidus metallidurans
           CH34]
          Length = 330

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 57/297 (19%), Positives = 105/297 (35%), Gaps = 27/297 (9%)

Query: 41  CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLK 100
              R    FLA    +KI +     +    ++AF+  R   +   RS    L  ++    
Sbjct: 35  RQLRLLDRFLAERGIDKIDV-----IDGACLQAFLDSRH--RTNPRSYNNLLGDVRRLFD 87

Query: 101 YLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI--DARNSA 158
           ++  +++   S ++     +++  +P  L   + +  +  +       ++          
Sbjct: 88  WIVGQQMLPASPLVAKAKPQRARRIP-FLFSPEVIRRLLALARALPDNSRAPQRGITYEM 146

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC 217
           I  LL   GLR+ E   L   ++  ++  L I   K  K R+VP  P +   + EY    
Sbjct: 147 IFALLASLGLRVGEVAGLQWGDVDLEREVLEISNTKFGKDRLVPFGPKLAARLREYRLER 206

Query: 218 PFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIR-QLRRYLGLPLSTTA-----HTLRHSFA 270
                +      LF      P++    +   R  L   L L +         H LRHSFA
Sbjct: 207 ERQGRICTGAHHLFSWNGRTPISTNSIRNTFRDDLLPQLHLTVPPGCFGPHVHGLRHSFA 266

Query: 271 TH----LLSNGG----DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
                     G      L  + + LGH    +T +Y  + ++   D   E ++   P
Sbjct: 267 VRTLLGWYRQGIIPSDRLHHLSTFLGHVNPKSTAVYLTITNE-LLDAANERFESFAP 322


>gi|332661998|ref|YP_004451467.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100]
 gi|332337495|gb|AEE54594.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 501

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 82/184 (44%), Gaps = 12/184 (6%)

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---- 190
           + LV   L      TK  + +   I+ L+  CGLR++E + L  ++    Q+T+ +    
Sbjct: 8   IKLVSRQLQEALAGTK--NLKYRVIILLMLDCGLRVTEVVQLQRKHFNFMQNTVTVASLK 65

Query: 191 -QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
            + K  + R +PL   + +A+ +Y+             P  +  +   L+  V  + I++
Sbjct: 66  KRSKRLRTRSIPLSTRLLEALADYWPRIKDPEPDTYIFPAAKTSKALYLSRVVVWKRIKK 125

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
               +        H LRH+FAT ++  G D+R  Q +LGH    TT+IY +V  +     
Sbjct: 126 YSGGV-----VHPHMLRHTFATRVVREGNDIRVAQKLLGHNSQLTTEIYLHVEDQELQQA 180

Query: 310 MMEI 313
           +  I
Sbjct: 181 IRSI 184


>gi|308232201|ref|ZP_07415262.2| integrase [Mycobacterium tuberculosis SUMu001]
 gi|308374648|ref|ZP_07436853.2| integrase [Mycobacterium tuberculosis SUMu006]
 gi|308375530|ref|ZP_07444217.2| integrase [Mycobacterium tuberculosis SUMu007]
 gi|308377076|ref|ZP_07441079.2| integrase [Mycobacterium tuberculosis SUMu008]
 gi|308378046|ref|ZP_07481362.2| integrase [Mycobacterium tuberculosis SUMu009]
 gi|308379269|ref|ZP_07485701.2| integrase [Mycobacterium tuberculosis SUMu010]
 gi|308380428|ref|ZP_07489920.2| integrase [Mycobacterium tuberculosis SUMu011]
 gi|308214699|gb|EFO74098.1| integrase [Mycobacterium tuberculosis SUMu001]
 gi|308341194|gb|EFP30045.1| integrase [Mycobacterium tuberculosis SUMu006]
 gi|308346043|gb|EFP34894.1| integrase [Mycobacterium tuberculosis SUMu007]
 gi|308349004|gb|EFP37855.1| integrase [Mycobacterium tuberculosis SUMu008]
 gi|308353729|gb|EFP42580.1| integrase [Mycobacterium tuberculosis SUMu009]
 gi|308357572|gb|EFP46423.1| integrase [Mycobacterium tuberculosis SUMu010]
 gi|308361515|gb|EFP50366.1| integrase [Mycobacterium tuberculosis SUMu011]
          Length = 295

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 56/277 (20%), Positives = 99/277 (35%), Gaps = 45/277 (16%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQ---------------TIRQLSYTEIRAFISKRRTQK 82
           S+  D   +L+ L    +   TI+                   ++   +  ++ K+  Q 
Sbjct: 34  SWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLLDWLGKQ--QH 91

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +     K   S ++ F  +  +     +    ++  ++     PR           D   
Sbjct: 92  LSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRP-------AGDDVWQ 144

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
              +   + I+     ++ L    GLR +EA      + + D   L + GKG K RIVP+
Sbjct: 145 AALAKADRRIE----LMIRLAGEAGLRRAEAAQAHTGD-LMDGGLLLVHGKGGKRRIVPI 199

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
              +   I +                LF    G  L      + + +      LP   T 
Sbjct: 200 SDYLAALIRD-----------TPHGYLFPNGTGGHLTAEHVGKLVSRA-----LPGDATM 243

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           HTLRH +AT       +LR++Q +LGH  + TT+ YT
Sbjct: 244 HTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYT 280


>gi|238896397|ref|YP_002921135.1| tyrosine recombinase [Klebsiella pneumoniae NTUH-K2044]
 gi|238548717|dbj|BAH65068.1| site-specific recombinase involved in flagellar phase
           switching/type 1 fimbriae regulatory protein with FimB
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 202

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 45/174 (25%), Positives = 67/174 (38%), Gaps = 7/174 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R L  K+   ++       +        R+  ++ L +  G+RISE L L   ++   + 
Sbjct: 5   RFLTAKEVQAMMQ------AARQGPTGERDYCLILLAFRHGMRISELLDLHYHDLDLHEG 58

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            + ++  K     I PL    R+AI  +  +       +    LF   RG  L+     R
Sbjct: 59  RVNVRRLKNGFSTIHPLRFDEREAIERWSLVRAGWKAADKTDALFISRRGTALSRQQAYR 118

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            IR      G    T  H LRH+    L   G D R IQ  LGH  +  T  YT
Sbjct: 119 IIRSAGENAGTVTHTHPHMLRHACGYELAERGTDTRLIQDYLGHRNIRHTVRYT 172


>gi|116048748|ref|YP_792452.1| putative integrase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115583969|gb|ABJ09984.1| putative integrase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 258

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 96/252 (38%), Gaps = 29/252 (11%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNL 119
             +   SY  +R    KR  + I  ++L   L  +++    LK        + +  ++ L
Sbjct: 14  TALDASSYASLRR---KRLEEGISGKTLNNELGYLRAVFNELKDLGQIDYGNPLAGVKLL 70

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K        L  +Q   L+D++       ++  +     +  L    G R SEA  L P 
Sbjct: 71  KLQERELSWLTTEQIGELLDSI------RSRCDNPHTELVTLLCLATGARWSEAEKL-PA 123

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           + +          K  K+R VP+ P +        +       ++           + L+
Sbjct: 124 HRLQGNVVTYAGTKSGKVRHVPIPPELA-------NRASAHWRMHGPFTSCITSFRRALD 176

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               Q           LP    +H LRHSFA+H + NGG++ ++Q ILGH  L+ T  Y 
Sbjct: 177 RTTIQ-----------LPQGQASHALRHSFASHFMMNGGNILTLQKILGHSTLTMTMRYA 225

Query: 300 NVNSKNGGDWMM 311
           ++   +  D + 
Sbjct: 226 HLYPDHLQDAIK 237


>gi|329964312|ref|ZP_08301393.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328525361|gb|EGF52409.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 410

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 55/291 (18%), Positives = 121/291 (41%), Gaps = 22/291 (7%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLK 89
            + +T++ Y+   +  +  +    + K+    +R++S   +R F    +T+K     ++ 
Sbjct: 133 YADITVRRYDNCLKYLMELVKR--DYKVDDMLLREVSGELVRKFDLYLKTEKHCAQNTVI 190

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R +   K  +      +  T++    ++  +   +  + L++ +      N +       
Sbjct: 191 RYMKCFKKVINLAIANEWLTKNPFAGIKFHEVEVN-KQFLSQAEI-----NRIWQKEFRI 244

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQGKGDKIRIVPLLP--SV 206
           + ++      ++ +Y  GL   +  +L P+++++D    L I    +K   +  +P  S+
Sbjct: 245 ERLELVRDVFIFCVY-TGLAFIDVYNLRPEHVLEDNNGNLWIVKPREKTNNICNIPLLSI 303

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            K ILE Y   P+ ++    LP+    +           Y++++    G+  + T HT R
Sbjct: 304 PKQILEKYKDNPYCMDKGTLLPVPCNQKM--------NSYLKEIADLCGIKKNLTTHTAR 355

Query: 267 HSFA-THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           HSFA    L+N   L ++  +LGH     TQ Y  V  +     M  +  Q
Sbjct: 356 HSFASVIALANNVSLPNVAKMLGHSSTRMTQHYAKVLDQTILRDMQAVEKQ 406


>gi|307149662|ref|YP_003891032.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306986791|gb|ADN18667.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 325

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 107/243 (44%), Gaps = 18/243 (7%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTE---SNILNMRNLKKSNSLP-RALNEKQALT 136
           +K       + L  ++  LK  ++  + +       +++ +++ ++ L  RAL +++   
Sbjct: 83  EKYSPAMANKMLCALRRTLKEARRLGLMSAEDYDRAVDIASVRGTSLLRGRALQKEEITA 142

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGD 195
           L+   +     ++     R++A+L +L   GLR SE ++L   +       L I+G KG 
Sbjct: 143 LMSVCI----SDSTNTGIRDAALLSILMV-GLRRSEVVNLDLSDFNARTRGLTIRGAKGK 197

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP--LNPGVFQRYIRQLRRY 253
           K R   L     +A+ ++  +  ++    +  PL +  R  P  ++       +++  + 
Sbjct: 198 KDRSNYLPVWGVEAVQDWLKVRGYEPGP-LLYPLNKARRIIPRRMSEQAVMSALQKRGQQ 256

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+  S + H LR +F + LL  G DL ++  + GH   STT  Y     + G +     
Sbjct: 257 AGIA-SFSPHDLRRTFISDLLDAGVDLVTVSQLAGHASPSTTSKY----DRRGEEAKKRA 311

Query: 314 YDQ 316
            D+
Sbjct: 312 IDR 314


>gi|296162809|ref|ZP_06845592.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886980|gb|EFG66815.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 559

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 67/334 (20%), Positives = 122/334 (36%), Gaps = 52/334 (15%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR--RTQKI 83
            +ER     T ++Y  +  + L++     E    + ++     T  RAF+     RT+ +
Sbjct: 222 WLERHEVAETQRAYRREAERLLLWA--ILERGRALSSLTSEDATAYRAFLRHPAPRTRWV 279

Query: 84  GDR------------------SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS- 124
                                S+  +LS + +  ++L +++    +    ++ ++ +   
Sbjct: 280 APACPRSSPEWRPFTGALSLDSIAYALSVLGAMFRWLIEQRYVLANPFAGLK-VRGAQRN 338

Query: 125 ----LPRALN--EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
                 RA    E + +  + + L  +   T     R   +L   YG GLR +E + +T 
Sbjct: 339 GELDASRAFTSGEWELVRTIADGLEWSHGWTAPAAQRLRFVLDFGYGTGLRAAELVGVTL 398

Query: 179 QNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLF-- 230
             I      +  L + GKG K   V L P  R A+ +Y       +     +   PL   
Sbjct: 399 GGIETGARGERWLHLTGKGAKAGKVVLPPLARFALDQYLVQRGLPVSPARWSPDTPLLGH 458

Query: 231 ---RGIRGKPLNPGVFQRYIRQLRR--------YLGLPLSTTAHTLRHSFATHLLSNGGD 279
               G    P    + +R+                G     T H +RH+ ATH L+ G  
Sbjct: 459 LDAPGGITTPRLREILRRFFHAAADSIEADHLALAGKLRRATPHWMRHTHATHALAGGAT 518

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           L S++  L H  +STT +Y      +    M +I
Sbjct: 519 LTSVRDNLRHASISTTSVYL---DDDEVQRMRQI 549


>gi|283455528|ref|YP_003360092.1| phage integrase [Bifidobacterium dentium Bd1]
 gi|283102162|gb|ADB09268.1| Phage integrase [Bifidobacterium dentium Bd1]
          Length = 244

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 99/250 (39%), Gaps = 29/250 (11%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           +    ++  +   ++ +   + +   + K   + + S+  +     + +++  + + ++ 
Sbjct: 13  KPPENVTRADCEKWMGR---EGLSAETRKGIRATLTSYFDWCVDHDLRSDNPAIGLPHVA 69

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
            S   PR   E      +D            +  R+  ++ L    GLR SE   ++ ++
Sbjct: 70  GSKPHPRPCPETGIREAMDG-----------LSERDRLMVRLGAELGLRRSEIAKVSGRD 118

Query: 181 IMD--DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           ++   D + LR+ GKGDK R++PL   +   I +                LF       +
Sbjct: 119 VVGPADNALLRVVGKGDKQRLIPLPQDLAVRIRQ-----------TGDGWLFPSRNDHGI 167

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +     R  + +     LP S   H+LRH  AT       DL ++ ++LGH  ++TTQ Y
Sbjct: 168 SHLTAGRVGKIVGSA--LPQSYGTHSLRHRAATQAYLATHDLLAVSTLLGHSSVATTQRY 225

Query: 299 TNVNSKNGGD 308
             +  +    
Sbjct: 226 VAMPPEELRK 235


>gi|240171153|ref|ZP_04749812.1| putative phage integrase [Mycobacterium kansasii ATCC 12478]
          Length = 364

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 58/351 (16%), Positives = 120/351 (34%), Gaps = 57/351 (16%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +E   +L +L  + G S  T ++Y     +  +FL++ +   I  + I  +   +   
Sbjct: 19  LHREGSAYLASLRAQ-GRSANTERTYAG---RVALFLSYCSSTGIDWRAIEFIELGQFLH 74

Query: 74  FISKRRTQK----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA- 128
           +++    +         +    ++ +  FL++   +   +   +  +   +    LP   
Sbjct: 75  WLAATPPRGSARLRSAHTANHIMTTVCEFLRFGAAQGWVSVELVERLATPRHIRYLPGYD 134

Query: 129 ------LNEKQALTLVDNVLLHTSHETKWI-------------DARNSAILYLLYGCGLR 169
                  +  Q  TL    L  T  ET+ +             +AR+  ++ LL   G+R
Sbjct: 135 QGENAQFSVVQVKTL---RLPATLPETRSLMLEQVEQLIEATTNARDRLLVALLAVSGMR 191

Query: 170 ISEALSLTPQNIMD-----------DQSTLRIQG---------KGDKIRIVPLLPSVRKA 209
           I EAL L  +++                 + ++          K    R +P+   +   
Sbjct: 192 IGEALGLRREDLHLLTSSTGLGCSIGGPHVHVRRRMNENGAIAKARCPRSIPIPAELVGL 251

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV----FQRYIRQLRRYLGLPLSTTAHTL 265
             +Y               +F  I   PL  G+          +L   +G       H L
Sbjct: 252 YADYQHERDDVAAAADSDMVFVNIYRPPLGAGMRYGNAYALFGRLSSRVGFTAH--PHML 309

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           RH+ AT  + NG    ++Q +LGH    + + Y +         +  +  +
Sbjct: 310 RHTAATEWMQNGAARDTVQRLLGHVSAMSMERYLHPTDATKRRAVELVAAK 360


>gi|331088577|ref|ZP_08337488.1| transposase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330407534|gb|EGG87034.1| transposase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 397

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 56/302 (18%), Positives = 104/302 (34%), Gaps = 34/302 (11%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
           +   +Q    +    E+K+  ++I  +  ++ + +  + + +     ++      +K+  
Sbjct: 100 KSTMKQREQLMRLLKEDKLGARSIDTIKPSDAKEWAVRMKDKGFSYNTINNHKRSLKASF 159

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
               +     ++      + K S  L     EK ALT      L +  +T  +  +    
Sbjct: 160 YIAIQDDCVRKNPF----DFKLSEVLENDTKEKVALTEEQEQALLSFIKTDNVYHKYYDD 215

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLL 203
           + +L   GLRISE   LT  +I      + I                      IR VPL 
Sbjct: 216 VLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGYYIETPKTKSGIRQVPLS 275

Query: 204 PSVRKAILEYYDLCPFDLNL---NIQLPLFRGIRGKP--------LNPGVFQRYIRQLRR 252
               +A        P             LF   + KP        L   + ++Y +  + 
Sbjct: 276 RETIQAFQRVMKKRPKAEPFVIDGRGNFLFVNHKDKPKVAIDYNALFVRMVKKYNKHHKD 335

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMM 311
                   T HTLRH+F T L S   + + +Q I+GH  +S T   Y + +       + 
Sbjct: 336 --NPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQ 393

Query: 312 EI 313
            +
Sbjct: 394 RL 395


>gi|294340302|emb|CAZ88679.1| putative Phage integrase [Thiomonas sp. 3As]
          Length = 410

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 117/292 (40%), Gaps = 21/292 (7%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           ++   +  +L   +GL+  T        R+  I  A  +    +       S  E+R F+
Sbjct: 121 EQLLRFDDHLLHAKGLAGSTR------LRRLAIVRALLSMTSNSTTP----SAEELRQFL 170

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNLKKSNSLPRALNEKQ 133
           ++  ++ +   S   + + ++S+L +        E    ++      +   LP+ L   +
Sbjct: 171 AQELSR-VSAASGGVTATAVRSYLGFRAFEGDRVEHLLPVVAAPAHWRLAPLPQTLAPDE 229

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG- 192
              L+           +       A++  +   GLR SEA++L   +I     T+RI G 
Sbjct: 230 VNRLLAAFPADLPSRLRC-----YALVRCVVDLGLRSSEAIALELDDIDWVAGTVRIVGS 284

Query: 193 KGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           K  +  ++PL      AI +Y                       +P+   V +R +RQ  
Sbjct: 285 KSRRADVLPLPQLTGAAIADYVRSERRPQTTSRRVFVRHVAPVDEPVAADVVRRAVRQAY 344

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           R  GLP  T  H LRH+ A+ LL+ GG L+ +  +L H  L T+ IY  V+ 
Sbjct: 345 RRAGLPY-TRVHILRHTLASRLLNTGGTLKEVADVLRHRELDTSLIYAKVDF 395


>gi|146313149|ref|YP_001178223.1| phage integrase family protein [Enterobacter sp. 638]
 gi|145320025|gb|ABP62172.1| phage integrase family protein [Enterobacter sp. 638]
          Length = 336

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 67/337 (19%), Positives = 122/337 (36%), Gaps = 51/337 (15%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDT--------RQFLIFLAFYTEEKIT 59
           E ++FE    +  W +  E  R L +L    Y            RQ  +  AF    +  
Sbjct: 34  EALAFEQYTVQNPWQEEKEDRRTLKELVDSWYSAHGITLKDGLKRQLAMHHAFECMGEPL 93

Query: 60  IQTIRQLSYTEIRA------FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESN 112
            +      ++  R       +    R +++  R+L   L+  ++    L +      E+ 
Sbjct: 94  ARDFDAQMFSRYREKRLKGEYARSNRVKEVSPRTLNLELAYFRAVFNELNRLGEWKGENP 153

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           + NMR  +        L   Q   L+     H   + +        ++ +    G R SE
Sbjct: 154 LKNMRPFRTEEMEMAWLTHDQISQLLGECKRHDHPDLE-------TVVRICLATGARWSE 206

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
           A SL    +   + T     KG K R VP+   + +++ +           + +  LF  
Sbjct: 207 AESLRKSQLAKYKITYT-NTKGRKNRTVPISKELYESLPD-----------DKKGRLFSD 254

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             G            R      G+  P     H LRH+FA+H + NGG++  +Q +LGH 
Sbjct: 255 CYG----------AFRSALERTGIELPAGQLTHVLRHTFASHFMMNGGNILVLQRVLGHT 304

Query: 291 RLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
            +  T  Y +    +  D +     + +P  T K+++
Sbjct: 305 DIKMTMRYAHFAPDHLEDAV-----KLNPLSTHKEQQ 336


>gi|325856124|ref|ZP_08171976.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|327313880|ref|YP_004329317.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|325483681|gb|EGC86647.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|326945479|gb|AEA21364.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 406

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 70/319 (21%), Positives = 132/319 (41%), Gaps = 31/319 (9%)

Query: 14  LLKERQNWL----QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLS 67
           LL+    +L    + + I+R L  L L++Y+      L  L  Y ++K  +  I   QL 
Sbjct: 110 LLESFGEYLTQTKERIGIDRALKTLKLRTYQ------LSLLREYVQKKYKVSDIPLSQLD 163

Query: 68  YTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
            T I  F       +++   S+  +LS +++ ++   K+ +      L   + ++    P
Sbjct: 164 NTFIEGFEYYLTIDRQLKRSSISSTLSTLQTIVRMAVKKGVLDFYPFLGY-SYERPKGEP 222

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R++ + +   ++D   L    E   I      +       GL IS+  +L  +NI+ ++ 
Sbjct: 223 RSITQDELQKIID---LEIEWENYRIV---RDLFVFSCFSGLAISDVRNLREENIVLEEG 276

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            L I+G+  K +    +  +  A                 +P             V    
Sbjct: 277 ELCIKGRRMKTKTPYRVQVLPPAWAIMERYRGKRAGFVFDVP----------TTDVILNG 326

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           I  ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQIY  V+S+ 
Sbjct: 327 IHHIQRNIGMETPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAAVSSER 386

Query: 306 GGDWMMEIYDQTHPSITQK 324
               M ++  +   + T K
Sbjct: 387 IHRDMQKVQQRIQDTFTLK 405


>gi|290511259|ref|ZP_06550628.1| tyrosine recombinase [Klebsiella sp. 1_1_55]
 gi|289776252|gb|EFD84251.1| tyrosine recombinase [Klebsiella sp. 1_1_55]
          Length = 188

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 43/156 (27%), Positives = 61/156 (39%), Gaps = 1/156 (0%)

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLL 203
            +        R+  ++ L +  G+RISE L L   ++   +  + ++  K     I PL 
Sbjct: 3   QAARQGPTGERDYCLILLAFRHGMRISELLDLHYHDLDLHEGRVNVRRLKNGFSTIHPLR 62

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              R+AI  +  +            LF   RG PL+     R IR      G    T  H
Sbjct: 63  FDEREAIERWSQVRAGWKAAAKTDALFISRRGTPLSRQQAYRIIRSAGENAGTVTHTHPH 122

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            LRH+    L   G D R IQ  LGH  +  T  YT
Sbjct: 123 MLRHACGYELAERGTDTRLIQDYLGHRNIRHTVRYT 158


>gi|313897734|ref|ZP_07831275.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312957269|gb|EFR38896.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 397

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 57/298 (19%), Positives = 105/298 (35%), Gaps = 34/298 (11%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           +Q    +    E+K+  ++I  +  ++ + +  + + +     ++      +K+      
Sbjct: 104 KQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMKDKGFSYNTINNHKRSLKASFYIAI 163

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           +     ++      + K S  L     EK ALT      L +  +T  +  ++   + +L
Sbjct: 164 QDDCVRKNPF----DFKLSEVLENDTKEKVALTEEQEQALLSFIKTDNVYHKHYDDVLIL 219

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVR 207
              GLRISE   LT  +I      + I                      IR VPL     
Sbjct: 220 LKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGYYIETPKTKSGIRQVPLSRETI 279

Query: 208 KAILEYYDLCPFDLNL---NIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGL 256
           +A        P             LF   +GKP        L   + ++Y +  +     
Sbjct: 280 QAFQRVMKKRPKAEPFVIDGQSNFLFVNHKGKPKVAIDYNALFVRMVKKYNKHHKD--NP 337

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
               T HTLRH+F T L S   + + +Q I+GH  +S T   Y + +       +  +
Sbjct: 338 LPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQRL 395


>gi|295841265|dbj|BAJ07036.1| integrase [uncultured bacterium]
          Length = 395

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 58/284 (20%), Positives = 103/284 (36%), Gaps = 60/284 (21%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           R  S  T ++Y   T ++L F          +Q I     T +RAF+     +  +   +
Sbjct: 134 RHYSPRTEETYCYWTGRYLGFCR--------LQRIDTRKSTSVRAFLEHIVLKGKVAAAT 185

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
              +L+ +  +   +    +      +  R  +K   LP  L   +  +L          
Sbjct: 186 QSIALNALNFWFGQVLGESLGDLGGFVKSRRPRK---LPVVLTRGEVESLF--------- 233

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
             +++    + +  LLYG GLR++E + L  +++      + ++  KG K R+  L    
Sbjct: 234 --RFLGGSEAIMAGLLYGAGLRLTEVIRLRVKDVDFAGRQIAVRNSKGGKDRVTVLPDRS 291

Query: 207 RKAI------------------------------------LEYYDLCPFDLNLNIQLPLF 230
           R+ I                                    LE+     F  +        
Sbjct: 292 REPIARHLKKVKDLFRKDRKRKFAGATFPEALGRKYPNGPLEWPWQFVFPASRLTVEAGT 351

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
              R   ++  V QR +R+  R  G+  + T HTLRH+FATHLL
Sbjct: 352 GKRRRHHIDDSVLQRAVREAARRSGMTKAVTCHTLRHTFATHLL 395


>gi|289628910|ref|ZP_06461864.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289646876|ref|ZP_06478219.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|330870373|gb|EGH05082.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 321

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 104/250 (41%), Gaps = 11/250 (4%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
            I       L    + A ++  R       +    ++ I+  +    +  + +   +L +
Sbjct: 58  DIHDIPWHTLQPGHVTALVATLREDDYAPNTTSLYVNAIRGVMNEAWRHDLISHEQLLKI 117

Query: 117 RNLKK--SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           R++K      L +  N +   TL+  ++   + + +    R++AI+ +L G G+R SE++
Sbjct: 118 RSIKPVSGTRLAKGRNIR--RTLIRELMQACAADPRPQGRRDAAIIAILCGSGMRKSESV 175

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---R 231
           +L    I   + +LR+ GKG+K  I        KA+ ++ +L    L        F   R
Sbjct: 176 NLDLSQIDFAERSLRVLGKGNKQLIKYAPEWAFKALNDWLELRRSCLQPGQGDDPFLFNR 235

Query: 232 GIRGKPLNP-GVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
             RG  +    + +  I  + +  G  + ++   H  R SF T ++    DL   Q +  
Sbjct: 236 IRRGSHITRDRITKHAIYFIAKQRGRQVGVNIMPHDFRRSFITRVIEE-FDLSIAQKLAH 294

Query: 289 HFRLSTTQIY 298
           H  +STT  Y
Sbjct: 295 HTHISTTASY 304


>gi|15606394|ref|NP_213774.1| hypothetical protein aq_1137 [Aquifex aeolicus VF5]
 gi|2983608|gb|AAC07178.1| putative protein [Aquifex aeolicus VF5]
          Length = 290

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 63/308 (20%), Positives = 125/308 (40%), Gaps = 41/308 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + W ++L  E+  S+ T ++Y    ++F  F     +E      I  L  + +  F+  
Sbjct: 4   LEAWERHL--EKTKSQKTKETYLMLVKEFFKFHKVDEKE-----IIENLKPSMVYRFVD- 55

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR----------NLKKSNSLPR 127
                +   SL  +LS ++ FLK+L +R+   +S   +++          N KK+   PR
Sbjct: 56  --ESDLNPSSLLTTLSALRYFLKFLTRREYIEKSMYESLKAAIEEAREELNAKKTPRYPR 113

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS- 186
           AL  ++   + +          K    +   I  L    G+R+ E   L+ +N   D+S 
Sbjct: 114 ALTREEIEAIFE----------KVKGKKYEKIYTLFLYSGIRLGEYEKLSEENFFMDKSG 163

Query: 187 --TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
              +++  +  K     L+P     IL         +   +   +        +  GV Q
Sbjct: 164 ILWIKLTPEMTKRNKGRLVP-----ILSPDKDETLKVTEKLSRWIEDFEGNFRVKRGVLQ 218

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
            Y  +L + L +  S   H+ RH++ T+L+++G  +  ++   GH  + TT + Y   + 
Sbjct: 219 VYTDRLSKRLNIDFSI--HSFRHTYITNLINSGFPIEVVKEFAGHSSIKTTVETYYKFSQ 276

Query: 304 KNGGDWMM 311
           K   + + 
Sbjct: 277 KRAQELVR 284


>gi|301311630|ref|ZP_07217556.1| putative truncated integrase [Bacteroides sp. 20_3]
 gi|300830371|gb|EFK61015.1| putative truncated integrase [Bacteroides sp. 20_3]
          Length = 312

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 115/301 (38%), Gaps = 27/301 (8%)

Query: 20  NWLQNLE-IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           N+L   +      +K  ++  +    +F  FL               ++   +  F++  
Sbjct: 27  NFLDYFQAYINSYTKKDIRMVQIALSRFKDFLKEQYPMNEFSIKPELITKEMMEQFVAYL 86

Query: 79  RTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQAL 135
           +++ +G   +S+ +     K  ++Y     +  +    ++     S  L +  L+ ++  
Sbjct: 87  QSRSVGEGAKSIYQRF---KKVIRYAIDHDVMLKDPCKSVTCKVDSQMLRKDVLSPEEIQ 143

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--GK 193
            L+        H          A ++ LY CGLR  +   LT +N+      L+ +    
Sbjct: 144 KLI------ACHYDNENPTIRRAFIFCLY-CGLRFCDVKDLTYKNVDYANRLLKFEQSKT 196

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
                   ++  +   +L      P D N L   LP +              + +++  +
Sbjct: 197 KGHSASSGVVIPLNDGLLSIIGEAPADKNCLIFDLPTYESCC----------KSVKRWVK 246

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    + H  RHSFA ++L+NG +++++ S+LGH  L  T+ YT    K   + +  
Sbjct: 247 RAGIDKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLKEEAINS 306

Query: 313 I 313
           +
Sbjct: 307 L 307


>gi|288802660|ref|ZP_06408098.1| integrase [Prevotella melaninogenica D18]
 gi|299141691|ref|ZP_07034827.1| integrase [Prevotella oris C735]
 gi|288334810|gb|EFC73247.1| integrase [Prevotella melaninogenica D18]
 gi|298577027|gb|EFI48897.1| integrase [Prevotella oris C735]
          Length = 403

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 58/289 (20%), Positives = 112/289 (38%), Gaps = 28/289 (9%)

Query: 35  TLQSYEC-DT--RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKR 90
           T  +Y   D   R F  FL        T   I +L+   I  F    +T       +  +
Sbjct: 104 TKANYRKFDICKRHFAKFLEEKYAR--TDLNIIELTPIVIHDFDVYLKTVVGQCFNTAIK 161

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           +L   K+ + + +K  +      LN+   K        L +++  T++           +
Sbjct: 162 TLKTFKTVIIFGRKAGVFNHDPFLNIH-FKTKRVDRGFLTDEEVDTIMHKEFA----TQR 216

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRIQGKGDKIRIVPLLPSVR 207
            ++ R+  +       GL   +  +LTP N   +   Q  +  + K D +  + LL   +
Sbjct: 217 LVNVRDIFLFSCF--TGLAYVDVANLTPDNIITMDGKQWIVTARQKTDTLSHILLLDIPK 274

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             I +Y                  G     L+      Y++++    G+  + T H  RH
Sbjct: 275 IIIKKYEGKAKN------------GRLIPILSNQRMNSYLKEIADVCGINKNLTFHMARH 322

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +FAT +L+ G  + S+  +LGH  ++TTQ+Y  + +K   + M+ +  +
Sbjct: 323 TFATMMLTKGVPVESVSKMLGHTSITTTQLYARITNKKIENDMLAVSKK 371


>gi|311695984|gb|ADP98857.1| phage integrase family protein [marine bacterium HP15]
          Length = 327

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 52/267 (19%), Positives = 103/267 (38%), Gaps = 30/267 (11%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           ++ L  +A +    I     R +  T   A+ + +  +    ++L   L  + +    L 
Sbjct: 83  KRCLDTMAEFLGNPIA----RTVKPTSFLAYRAHKIQKGASKKTLNNHLGYLNAVYNQLN 138

Query: 104 KRKITT-ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
           +      ++ I N+  ++        L  +Q   L+  +      E    +     +  +
Sbjct: 139 RLNEIDFDNPIRNVEMIRLDERELSWLTVEQIRHLLKTI------EDFSQNPHVHLLTRI 192

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
               G R  EA +L  +++ + + T  +  K  K R VP+   + + I ++       L 
Sbjct: 193 CLATGARWGEAENLQLRHVQEGKLTF-VNTKSGKSRSVPVSKELFEEIRKH-------LK 244

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
            +           + L+                LP    AH LRH+FA+H L NGGD+ +
Sbjct: 245 EHGCFSFSLSAFRRALDKSGIT-----------LPPGQAAHVLRHTFASHFLMNGGDIVT 293

Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGDW 309
           +Q ILGH  +S T  Y+++  ++    
Sbjct: 294 LQKILGHSHISMTLRYSHLAPEHLSKA 320


>gi|291514262|emb|CBK63472.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 407

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 114/301 (37%), Gaps = 27/301 (8%)

Query: 20  NWLQNLE-IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           N+L   +      +K  ++  +    +F  FL               ++   +  F++  
Sbjct: 122 NFLDYFQAYINSYTKKDIRMVQIALSRFKDFLKEQYPMNEFSIKPELITKEMMEQFVAYL 181

Query: 79  RTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQAL 135
           +++ +G   +S+ +     K  ++Y     +  +    ++     S  L +  L+ ++  
Sbjct: 182 QSRSVGEGAKSIYQRF---KKVIRYAIDHDVMLKDPCKSVTCKVDSQMLRKDVLSPEEIQ 238

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--GK 193
            L         H          A ++ LY CGLR  +   LT +N+      L+ +    
Sbjct: 239 KL------AACHYDNENPNVRRAFIFCLY-CGLRFCDVKDLTYKNVDYGNRLLKFEQSKT 291

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
                   ++  +   +L      P D N L   LP +              + +++  +
Sbjct: 292 KGHSASSGVVIPLNDGLLSIIGEAPADKNCLIFDLPTYESCC----------KSVKRWVK 341

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    + H  RHSFA ++L+NG +++++ S+LGH  L  T+ YT    K   + +  
Sbjct: 342 RAGIDKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLKEEAINS 401

Query: 313 I 313
           +
Sbjct: 402 L 402


>gi|146300425|ref|YP_001195016.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146154843|gb|ABQ05697.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 305

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 62/277 (22%), Positives = 113/277 (40%), Gaps = 33/277 (11%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-------KIGDRSLKRS 91
           Y+    +FLI+L     E   I  I+ ++  E   +      +        +  +++K  
Sbjct: 34  YQKAVSEFLIWL-----EDSGITNIKSVTGKESVNYFEYLIKRPKLRGKGTLAGKTIKFH 88

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETK 150
           L  +  F+  L + +     N   + +  + N   R AL+ ++   +  +          
Sbjct: 89  LFALGLFVSNLLENRHIE--NAYYIPSYSEENGKARNALSVEEIRNIYQHCESDLQ---- 142

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKA 209
                  A+L + YGCGLR SE  +L  +++M  +  L ++ GKG K R VP+   V + 
Sbjct: 143 ------RALLSVAYGCGLRRSEITALNVRDVMLSKGMLIVRDGKGSKRREVPMSDIVVEY 196

Query: 210 ILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG----LPLSTTA 262
           + +Y     ++       +Q   F    GK +N       ++++         +    T 
Sbjct: 197 LGKYITEERYEKLISENKVQDAFFIHDSGKRMNGEYLNNTLKKMIEQTNDYKLIQKEITL 256

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           H LRHS A HL+     +  I+  LGH  ++TT IY 
Sbjct: 257 HCLRHSIANHLMEKNAGIDFIRGFLGHSGINTTYIYA 293


>gi|332884958|gb|EGK05212.1| hypothetical protein HMPREF9456_02976 [Dysgonomonas mossii DSM
           22836]
          Length = 410

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 119/295 (40%), Gaps = 25/295 (8%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E Q ++ ++   R  SK T+Q+Y+     FL +L         I     +    I  +IS
Sbjct: 110 EMQKYINHVVYARR-SKSTIQTYKQHLSYFLKYL-----NNNGIYDANLIKECHILKYIS 163

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN--LKKSNSLPRALNEKQA 134
            R  +         +L+ IK  L +  K  I  E     ++N  +     +       + 
Sbjct: 164 ARSDK-------SNALAIIKRLLNFWYKNGIIQEDVNDYLKNYHIPIQEKIRSFYLIDEV 216

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGK 193
             +  +V          I  RN A+L L    GLR ++   L+  +I   ++ + I Q K
Sbjct: 217 KKIEQSV-----DRGSAIGRRNYAMLLLATRLGLRATDIARLSFSSIDWVKNEIVINQHK 271

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            ++   +PLL  +  A++EY       ++ + Q+ L         +  V    +  L   
Sbjct: 272 TEREVRLPLLTDIGNALIEYIKNG-RPISESKQIFLVGHAPFIDASAKVISGALGTLVTQ 330

Query: 254 LGL---PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            G+         H++RHS AT ++  G  +  I S+LGH   +TT  Y N++ ++
Sbjct: 331 SGVSIGNRHHGPHSMRHSLATTMMDCGTPIPVISSVLGHKSSNTTAKYINIDIES 385


>gi|315648611|ref|ZP_07901708.1| integrase/recombinase XerD, putative [Paenibacillus vortex V453]
 gi|315275990|gb|EFU39338.1| integrase/recombinase XerD, putative [Paenibacillus vortex V453]
          Length = 235

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 95/245 (38%), Gaps = 17/245 (6%)

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKY--LKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            +R + K   + L + L G +    Y     + +  E   L +   K +  LP    E++
Sbjct: 3   ERRISPKRKAKELAKYLRGERPDYDYLKSLFQHLRAE---LEVEVPKTAKKLPYVPTEEE 59

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-G 192
                D V           + ++  I+  L   G+R+SE +++   ++      +RI  G
Sbjct: 60  LKRYYDVVWQAK-------NFQDMMIVKTLLYTGVRVSELINIKLSDVDFHYCQIRINKG 112

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG+K RIVP   S ++ +  +       +     + LF     K       ++ + +   
Sbjct: 113 KGNKDRIVPFPQSFKEMLAMH----ADSMKKKQAVYLFESSWKKKYTDRGIRKILAKYSE 168

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL  + + H LRH   T L   G D   IQ   GH    + ++Y+ +   +      E
Sbjct: 169 EAGLVQNLSPHKLRHFLLTWLKKQGIDDALIQPYSGHESRKSLEVYSKLAITDAQQEYNE 228

Query: 313 IYDQT 317
           + ++ 
Sbjct: 229 VINKF 233


>gi|308188180|ref|YP_003932311.1| Integrase [Pantoea vagans C9-1]
 gi|308058690|gb|ADO10862.1| Integrase [Pantoea vagans C9-1]
          Length = 337

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 91/235 (38%), Gaps = 31/235 (13%)

Query: 79  RTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R + +  R++   L+  ++ F +  +  +    + + N+R  K + S    L +++  +L
Sbjct: 123 RVKTVTPRTVNLELAYFRAVFNELRRLDEWQAPNPLDNIREYKIAESEMAYLTDEEIRSL 182

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +      TS +          ++ L    G R  EA +L   N +     +  + KG K 
Sbjct: 183 LRECEASTSKDL-------LTVVKLCLATGARWGEAETLK-GNQIRAGKVIFTKTKGKKN 234

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL- 256
           R +P+  ++   +                 PLF                 R   +   + 
Sbjct: 235 RAIPISDALIAEL----------PASRKAKPLFSSC----------YAAFRSALKRAEIE 274

Query: 257 -PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            P     H LRH+FA+H + NGG++  +Q ILGH  +  T  Y++    +  + +
Sbjct: 275 TPAGQLTHVLRHTFASHFMMNGGNILVLQRILGHTDIKVTMRYSHFAPDHLFEAI 329


>gi|290476600|ref|YP_003469505.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii
           SS-2004]
 gi|289175938|emb|CBJ82741.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii
           SS-2004]
          Length = 183

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 76/180 (42%), Gaps = 8/180 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L   +   +++        +      R+  +L + +  G R+SE  +L   ++  + S
Sbjct: 5   KFLTRYEIDAILEQT------KQGRHAERDYCMLLMCFIHGFRVSELCNLCLSDLDLNSS 58

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            + I+  KG      PL+P   +A+ ++ D+     + +    +F   +   ++      
Sbjct: 59  IIHIRRLKGGLSTTHPLIPKEIEALKKWLDIRQKWRDADA-PWVFLSQKSGSISRQQVYA 117

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +++  +   + +S   H LRH+    L   G D R IQ  LGH  +S T IYT  N K 
Sbjct: 118 LLKRYGKQASVSVSPHPHMLRHACGYALADLGRDTRLIQDYLGHRNISHTVIYTASNVKR 177


>gi|32350769|gb|AAP51283.1| integrase [Escherichia coli]
          Length = 248

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 91/218 (41%), Gaps = 28/218 (12%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
             T+ ++ GKG K R + L  S+  ++ E         
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWW 199


>gi|111017486|ref|YP_700458.1| tyrosine recombinase [Rhodococcus jostii RHA1]
 gi|110817016|gb|ABG92300.1| probable tyrosine recombinase [Rhodococcus jostii RHA1]
          Length = 350

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 51/313 (16%), Positives = 102/313 (32%), Gaps = 36/313 (11%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
              RG +  T+ +   D       LA         + + +++  ++   + +  +     
Sbjct: 37  WTARGFADSTITN---DVGVLERMLAGLG------RPVWEVTAADVDRVVGELASSGRAV 87

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL----------------KKSNSLPRAL 129
            + +  +   K F ++L+ RK         +R                    +N  P   
Sbjct: 88  STRRNYVQVFKGFHRFLEVRKAAEIEAAFGVRLACPLDEFNAARHVGDDSPTANPPPAPE 147

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-- 187
                   +   +   +       AR+ A+   LY  G+R  E + L   ++   + T  
Sbjct: 148 RVAAFFEFLKARI--ATARKYGPAARDYALFRTLYHAGVRAEEVVMLDRGDVHFGRGTFG 205

Query: 188 -LRIQ----GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
            L ++     KG   R   +       ++  + L            L     G  +    
Sbjct: 206 KLHVRFGKGAKGSGPRPRWVPMLDGLDLVLRWYLDDVRGRFPDSSVLLCDESGGRMAAAT 265

Query: 243 FQRYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            +  +R L    G P +   + H +R + ATH    G DL +IQ +LGH+ +++T  Y  
Sbjct: 266 IRNRLRHLMSVEGRPEAEWFSPHGMRRACATHNYERGVDLVAIQQLLGHWTVASTMRYVR 325

Query: 301 VNSKNGGDWMMEI 313
            +     D     
Sbjct: 326 PSETFIEDAYQRA 338


>gi|325856041|ref|ZP_08171930.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483713|gb|EGC86677.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 407

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 65/287 (22%), Positives = 117/287 (40%), Gaps = 26/287 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKR 90
           S  TL+ YE   R F  FL        T   + +L+YT I  F    +T       +  +
Sbjct: 129 SATTLRKYELCKRHFAEFLKQKYSR--TDIKLCELTYTVIYDFDLYLQTAAGQCRNTATK 186

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           ++   K+     +K  +       N   +L+  +     L +++ L +V+  L       
Sbjct: 187 TMKIFKTITILGRKLGVLHHDPFANYHFHLEFVDR--GFLTDEEILKIVNKKLTIP---- 240

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRIQGKGDKIRIVPLLPSV 206
           +    R+  I       GL   +  +LTP++   + D Q  +  + K +    + LL   
Sbjct: 241 RLSLVRDIFIFSCF--TGLSYIDVANLTPEHLVNMDDKQWIMTKRQKTNVESNILLLDIP 298

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           ++ I +Y +    D        LF  +  + +N      Y++++     +  + T H  R
Sbjct: 299 KQIIAKYSNKTYRDSK------LFPVLSNQKMNA-----YLKEIADICDIGKNLTFHMAR 347

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           H+FAT  LS G  + S+  +LGH  + TTQIY  + +K     M E+
Sbjct: 348 HTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEEL 394


>gi|290474148|ref|YP_003467025.1| fimbriae regulatory protein [Xenorhabdus bovienii SS-2004]
 gi|289173458|emb|CBJ80237.1| fimbriae regulatory protein [Xenorhabdus bovienii SS-2004]
          Length = 234

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 75/180 (41%), Gaps = 13/180 (7%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L + +   L+      T        ARN  ++++ +  G R+SE LSL   ++  D  
Sbjct: 5   KYLTQSEIEMLL------TESGKHAHAARNICMMFMGFIHGFRVSELLSLKLSDVDLDSR 58

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDL------NLNIQLPLFRGIRGKPLN 239
           +LR+Q  K     I P++    + + ++    P  L      N  +   LF    G+ ++
Sbjct: 59  SLRVQRLKNGFSTIHPMVSREIQLLRQWLKGRPNYLPGTPQANSEVSDWLFLSRSGQRMS 118

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                + IRQ      L +    H LRH+    L  NG D R IQ  LGH  +  T  YT
Sbjct: 119 RQQVYKIIRQTSLKAKLSICANPHMLRHACGYALADNGVDTRLIQDYLGHRNIRHTVRYT 178


>gi|218897574|ref|YP_002445985.1| DNA integration/recombination/invertion protein [Bacillus cereus
           G9842]
 gi|218543461|gb|ACK95855.1| DNA integration/recombination/invertion protein [Bacillus cereus
           G9842]
          Length = 369

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 57/315 (18%), Positives = 114/315 (36%), Gaps = 39/315 (12%)

Query: 18  RQNWLQNLEIERGLS--KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            +++L +    + +S  K T   Y         F+  +    I +  + +L+   I+   
Sbjct: 65  LKDYLNHWLEIKSMSIQKSTFAGYR-------AFINQHVIPSIGMVALHKLNVMHIQKCY 117

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                + I + S+      +KS L    K+ I + +        KK  +  +   E++  
Sbjct: 118 KTAINKGITNNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKTSIQTWTEEEVK 177

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
             + +     S E+++      AI       G+R+ E L L  Q+I  ++ T+ I     
Sbjct: 178 KFLAH-----SQESRYHIGYLLAI-----TTGMRLGEVLGLRWQDIDFEKHTVTINQTSG 227

Query: 196 KI-------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-----FRGIRGKP 237
                          R +P+      A+ ++  L   +        L          G+ 
Sbjct: 228 HDNKIKKTAKTNSSKRTIPVPNETIVALKKHKILINKEKLRFGSAYLDQDLINCNEFGRI 287

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
           +    F++   +    +G+      H LRH+ AT LL  G + + I   LGH  +S T  
Sbjct: 288 IKRAHFRKSFIRATHKVGI-KEIKFHDLRHTHATILLKQGVNPKIISERLGHTDISMTLS 346

Query: 297 IYTNVNSKNGGDWMM 311
           +Y++V      + + 
Sbjct: 347 VYSHVLPNMQEEAVK 361


>gi|330860733|emb|CBX71025.1| integrase [Yersinia enterocolitica W22703]
          Length = 332

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 57/274 (20%), Positives = 106/274 (38%), Gaps = 34/274 (12%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRA-----FISKRRTQKIGDRSLKRSLSGIKS 97
                  L       IT +         +R      + +  RT+ +   ++    + +++
Sbjct: 62  LEIICKGLGNPIAADITPKDWAHYRDQRLRGEINNGYSTSLRTRMVTTGTVNSEQAYLRA 121

Query: 98  -FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
            F +  +  + +  + ++N+R   +       LN+ Q  +L+D   LH + E        
Sbjct: 122 VFNELTRLGEWSLPNPLMNIREFDQPEREMAWLNDDQIDSLLDASDLHGNPELT------ 175

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
             I+ L    G R +E   +    I  ++ T  I  KG K R VPL   + +A+  +   
Sbjct: 176 -LIVRLCLSTGARWNEIAKIKASQISPNKITF-INTKGKKNRTVPLSEEMYQALAAH--- 230

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
                      P ++           F R IR     + LP+    H LRH+FA+H +  
Sbjct: 231 -----KGKAFAPCYK----------QFYRVIRLA--QIELPVGQMTHVLRHTFASHFMMA 273

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           GG++  +Q ILGH  +  T  Y++    +  D +
Sbjct: 274 GGNIIVLQRILGHSDIRVTMRYSHFAPDHLEDAI 307


>gi|319938621|ref|ZP_08012999.1| integrase [Coprobacillus sp. 29_1]
 gi|319806186|gb|EFW02901.1| integrase [Coprobacillus sp. 29_1]
          Length = 379

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 54/298 (18%), Positives = 103/298 (34%), Gaps = 34/298 (11%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           +Q    +    E+K+  ++I  +  ++ + +  + + +     ++      +K+      
Sbjct: 86  KQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMKDKGFSYNTINNHKRSLKASFYIAI 145

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           +     ++      N K S  +     EK ALT      L +  +T  +  +    + +L
Sbjct: 146 QDDCVRKNPF----NFKLSEIIENDTKEKVALTEEQEQALLSFIKTDNVYHKYYDDVLIL 201

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVR 207
              GLRISE   LT  +I      + I                       R VPL     
Sbjct: 202 LKTGLRISELCGLTVADIDFKNEVVVIDHQLLKSKEQGYYIETPKTKSGTRQVPLSRETI 261

Query: 208 KAILEYYDLCPFDLNL---NIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGL 256
           +A             +     +  LF   +G P        L   + ++Y +  +     
Sbjct: 262 QAFQRVIRKRTKGKLIEIDGYKDFLFVNPKGNPKVAIDYNALFVRMVKKYNKHHKD--NP 319

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
               T HTLRH+F T L S   + + +Q I+GH  +S T   Y + +       +  +
Sbjct: 320 LPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQRL 377


>gi|317501620|ref|ZP_07959813.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316896997|gb|EFV19075.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 368

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 53/313 (16%), Positives = 106/313 (33%), Gaps = 40/313 (12%)

Query: 33  KLTLQS--YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           + T ++   +   +Q    +    E+K+  ++I  +  ++ + +  + + +     ++  
Sbjct: 62  QNTQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMKDKGFSYNTINN 121

Query: 91  SLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
               +K+      +     ++         ++       AL E+Q   L+  +     + 
Sbjct: 122 HKRSLKASFYIAIQDDCVRKNPFDFKLSEVIENDTKEKVALTEEQEQALLSFIKADNVYH 181

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----------------QG 192
             + D      + +L   GLRISE   LT  +I      + I                  
Sbjct: 182 KYYDD------VLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGYYIETPK 235

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIRGKP--------LNPG 241
                R VPL     +A        P             LF   +GKP        L   
Sbjct: 236 TKSGARQVPLSRETIQAFQRVMKKRPKAEPFVIDGRGNFLFVNHKGKPKVAIDYNMLFVR 295

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTN 300
           + ++Y +  +         T HTLRH+F T L S   + + +Q I+GH  +S T   Y +
Sbjct: 296 MVEKYNKHHKD--NPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAH 353

Query: 301 VNSKNGGDWMMEI 313
            +       +  +
Sbjct: 354 ASIDTAKSEVQRL 366


>gi|299142623|ref|ZP_07035753.1| integrase [Prevotella oris C735]
 gi|298575838|gb|EFI47714.1| integrase [Prevotella oris C735]
          Length = 415

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 60/311 (19%), Positives = 126/311 (40%), Gaps = 31/311 (9%)

Query: 14  LLKERQNWL----QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLS 67
           LL+    +L    + + I+R L    L++Y+      L  L  Y + K  +  I   QL 
Sbjct: 128 LLESFGEYLTQTKERIGIDRALKTFKLRTYQ------LSLLREYVQRKHRVSDIPLSQLD 181

Query: 68  YTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
              I  F       +++   S+  +LS +++ ++   K+ +      L   + ++    P
Sbjct: 182 KAFIEGFEYYLTIDRRLKRSSISSALSTLQTIVRMAVKKGMLDFYPFLGY-SYERPKGEP 240

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R++ +++   +++  +   ++           +       GL IS+  +L  +NI+ ++ 
Sbjct: 241 RSITKEELERIIELEIEWENYRIV------RDLFVFSCFSGLAISDVRNLREENIVLEEG 294

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            L I+G+  K +    +  +  A                 +P             +    
Sbjct: 295 ELCIKGRRMKTKTPYRVQVLPPAWAIMERYRGKRAGFVFDVP----------TSDIILNG 344

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +  ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQ+Y  V+S+ 
Sbjct: 345 MHYIQRNIGMETPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSER 404

Query: 306 GGDWMMEIYDQ 316
               M  I  +
Sbjct: 405 IHRDMQAIQQR 415


>gi|291289253|ref|YP_003517585.1| integron integrase IntI1 [Klebsiella pneumoniae]
 gi|290792214|gb|ADD63539.1| integron integrase IntI1 [Klebsiella pneumoniae]
          Length = 253

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 100/251 (39%), Gaps = 35/251 (13%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE-------YYDLCPFDLNLNIQLPLFRGIRGK 236
             T+ ++ GKG K R + L  S+  ++ E       ++     +    + LP     +  
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 237 PLNPGVFQRYI 247
                    ++
Sbjct: 222 RAGHSWLWFWV 232


>gi|270294584|ref|ZP_06200786.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
 gi|270276051|gb|EFA21911.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
          Length = 406

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 58/286 (20%), Positives = 116/286 (40%), Gaps = 26/286 (9%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSLKRSL 92
            T+Q YE  TR    F+    E +++   +  L    I  F +  +  +     S    L
Sbjct: 132 KTVQRYETTTRYLEEFIK--KEYQLSDIALNNLEVNFISKFDAFLKIEKGCAQNSAITRL 189

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +K  ++   +     +      R  K   + P  L   +       ++L      K +
Sbjct: 190 KNLKKIIRIALENDWIKKDPFAYYR-FKLEETDPEFLTMDEIK-----IILAKEFTIKRV 243

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQG---KGDKIRIVPLLPSVRK 208
           +      ++ ++  GL  S+   L+P++++ D++  L I+    K   +  +P+LP    
Sbjct: 244 EQVRDVFVFCIF-TGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAAS 302

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            + +Y ++      L   LP+        L+      Y++++    GL  +   H+ RHS
Sbjct: 303 ILEKYKNVAECTGKL---LPV--------LSNQRMNSYLKEIADVCGLQKNLCTHSARHS 351

Query: 269 FAT-HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +AT   L+NG  + ++  +LGH   S T+ Y  V  +N    M ++
Sbjct: 352 YATSICLANGVSMENVAKMLGHADTSVTKHYARVLDQNILKDMQKV 397


>gi|89147355|gb|ABD62538.1| integrase [uncultured bacterium]
          Length = 163

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 42/111 (37%), Positives = 55/111 (49%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +G G+      L    R A  E+     F      + P     R   LN    QR ++  
Sbjct: 52  KGFGEVWLPFALERKFRGAGREWCWQYLFPAASLSEDPQSGKTRRHHLNELSVQRAVKVA 111

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               G+    T HT RHSFATHLL NG D+R++Q +LGH  +STTQIYT+V
Sbjct: 112 IGIAGINKPATPHTFRHSFATHLLENGYDIRTVQDLLGHKDVSTTQIYTHV 162


>gi|332161996|ref|YP_004298573.1| Integrase family protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666226|gb|ADZ42870.1| Integrase family protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 314

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 57/274 (20%), Positives = 106/274 (38%), Gaps = 34/274 (12%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRA-----FISKRRTQKIGDRSLKRSLSGIKS 97
                  L       IT +         +R      + +  RT+ +   ++    + +++
Sbjct: 44  LEIICKGLGNPIAADITPKDWAHYRDQRLRGEINNGYSTSLRTRMVTTGTVNSEQAYLRA 103

Query: 98  -FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
            F +  +  + +  + ++N+R   +       LN+ Q  +L+D   LH + E        
Sbjct: 104 VFNELTRLGEWSLPNPLMNIREFDQPEREMAWLNDDQIDSLLDASDLHGNPELT------ 157

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
             I+ L    G R +E   +    I  ++ T  I  KG K R VPL   + +A+  +   
Sbjct: 158 -LIVRLCLSTGARWNEIAKIKASQISPNKITF-INTKGKKNRTVPLSEEMYQALAAH--- 212

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
                      P ++           F R IR     + LP+    H LRH+FA+H +  
Sbjct: 213 -----KGKAFAPCYK----------QFYRVIRLA--QIELPVGQMTHVLRHTFASHFMMA 255

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           GG++  +Q ILGH  +  T  Y++    +  D +
Sbjct: 256 GGNIIVLQRILGHSDIRVTMRYSHFAPDHLEDAI 289


>gi|303236694|ref|ZP_07323275.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483198|gb|EFL46212.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 407

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 57/318 (17%), Positives = 118/318 (37%), Gaps = 30/318 (9%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M G  L +  S   L   Q ++         +K  L+  +    +F  FL  Y       
Sbjct: 110 MLGYRLKKDRSINFLDYYQAYID------SYTKKDLRMIKIALNRFKDFLKEYYPLYEFS 163

Query: 61  QTIRQLSYTEIRAFISKRRTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
                ++   +  F+   +++ +G   +S+ +     K  ++Y    ++  +     +  
Sbjct: 164 IKPDLITKEMMERFVEYLQSRSVGEGAKSIYQRF---KKVVRYAIDHEVMLKDPCKGVVC 220

Query: 119 LKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
                 L +  L+  +  +L+     + +   +       A +  LY CGLR  +   LT
Sbjct: 221 KVDEQILRKDVLSMDEIQSLIQCHYENENPNVR------RAFILCLY-CGLRFCDVKDLT 273

Query: 178 PQNIMDDQSTLRI--QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
            +NI      L+              ++  +   +L      P DL+          I  
Sbjct: 274 YKNIDYTNHLLKFEQNKTKGHSANSGVVIPLNDGLLSLIGEAPEDLDT--------SIFN 325

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            P       + +++  +  G+    + H  RHSFA ++L+NG +++++ S+LGH  L  T
Sbjct: 326 LP-TYESCCKSVKRWVKRAGINKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHT 384

Query: 296 QIYTNVNSKNGGDWMMEI 313
           + YT    K   + +  +
Sbjct: 385 EKYTRAVDKLKSEAINSL 402


>gi|301058430|ref|ZP_07199451.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300447486|gb|EFK11230.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 399

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 53/297 (17%), Positives = 106/297 (35%), Gaps = 30/297 (10%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
            L E  S  L +   N+L+  +  +  S  T++        F+        + I  + + 
Sbjct: 107 ELEEPPSGYLEETILNYLKYCKKRKMRS-NTIRQKYFVLSNFV--------KSIGDKPVE 157

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            +  ++I A++  R        +  R L  I++   +   R+    +   ++  + +   
Sbjct: 158 LIRKSDIEAYLELRIDSGKS--TFNRDLRDIRAMFNWYYGREGIFHNPANDIEKIGEDVE 215

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ-NIMD 183
           L         + +    L+ T  E  +        L  ++  GLR  EA+ L    ++  
Sbjct: 216 LRYVPPFSDIVAV---KLMATRDEGDF--------LETIFYAGLRRIEAIRLLWSRDVDF 264

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           +  TL    +  K   +   P      L       ++    +   +F        +    
Sbjct: 265 ESRTLISWTRKRKNGTLTPKPKAITKTLYTALKNRYERRNKLDDRVF------QFSVEYL 318

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              +++L    G+      H LRH  A+ LLS    L ++Q  LGH R++TT  Y +
Sbjct: 319 NDMMKRLCEKAGVQ-HFGLHALRHLGASILLSENVPLPAVQEYLGHERITTTNTYAH 374


>gi|288933663|ref|YP_003437722.1| integrase [Klebsiella variicola At-22]
 gi|288888392|gb|ADC56710.1| integrase family protein [Klebsiella variicola At-22]
          Length = 201

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 67/173 (38%), Gaps = 8/173 (4%)

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L + +  +L+       + +T    ARN  +  L +  GLR SE   L   +I      
Sbjct: 12  FLTQNEIESLL------KAADTGLYAARNYCLTLLCFIHGLRASEICRLRISDIDLAARC 65

Query: 188 LRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           + I   K       PLL     A+  +  +         +  LF   +G PL+   F + 
Sbjct: 66  VYIHRLKKGFSTTHPLLEKEIHALKRWLAIRSSWPQAASE-WLFLSRKGNPLSRQQFYQI 124

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           I       GLPL    H LRHS    L + G D R IQ  LGH  +  T  YT
Sbjct: 125 IASSGDLAGLPLEIHPHMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYT 177


>gi|255306829|ref|ZP_05351000.1| site-specific recombinase [Clostridium difficile ATCC 43255]
          Length = 375

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 58/350 (16%), Positives = 127/350 (36%), Gaps = 79/350 (22%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT--QKI---- 83
             ++ +L+ Y    + +  +L             ++++  ++  F+S  +   + +    
Sbjct: 39  NFARNSLRMYCQHLKLYFEYLEQRE------LDFQKVTIDDLALFVSWLQNPYKSLKVIP 92

Query: 84  --------GDRSLKRSLSGIKSFLKYLKKRKITTES------------------------ 111
                     R++   ++ + +F  Y+ + +  + +                        
Sbjct: 93  THQVETVRSPRTVNIIVNTVLAFYDYILRNEEYSNNISDRLKKFVATPSRNFKGFLYGIA 152

Query: 112 -----NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
                   N+  LK   S P+ L++++  TL+              + R+  +L LLY  
Sbjct: 153 HEQKKVTSNILKLKVPKSKPKTLSKEEIGTLIRAC----------NNLRDKFLLTLLYET 202

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKI-----------RIVPLLPSVRKAILEYYD 215
           G+RI EALSL  ++       + +Q +G+             R + +  ++    +EY  
Sbjct: 203 GMRIGEALSLWIEDFDISDRVIDLQNRGELENNAEIKTVSSPRRIDISQNLADVFMEYIA 262

Query: 216 LCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
               D     +I + L    + KP+N        R L++  G+    T H  RHS  T L
Sbjct: 263 EYHTDEVETNHIFIKLSGSNKYKPMNYTDVDNLFRTLKKVTGI--YVTPHMFRHSSLTVL 320

Query: 274 LSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPSIT 322
              G     ++   GH  + TT   Y + + +     +   +++T P++ 
Sbjct: 321 RMAGWQPELLRIRAGHKNIYTTLNTYIHPSDEE----ITREFEKTQPNLD 366


>gi|86157887|ref|YP_464672.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774398|gb|ABC81235.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 387

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 56/268 (20%), Positives = 103/268 (38%), Gaps = 33/268 (12%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            +  ++  E++    +   +    ++    L  +   LK   + K         +R +K 
Sbjct: 114 PLSAITDEEVQKLKGRLANR--SAKTTNNVLVCLSVILKTAVEWKRLPALPC-RIRLVKV 170

Query: 122 SNSL-PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
             ++ P   +E Q   LV     +T          +   + L    GLR  E + L   +
Sbjct: 171 PKNVKPDFYDEGQLAQLVAAASENT---------GDLVTVLLGADAGLRRGETIGLEWPD 221

Query: 181 IMDDQSTLRIQG----------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
           I     TL ++           KG+  R+VPL   +R A+L +  L    +         
Sbjct: 222 IDFQAGTLTVRRAVYRGVVGTTKGNAERVVPLTERLRDALLAHRHLAGRRVLTGATDESI 281

Query: 231 RGI-----RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
           R +     R   L  G   +  +++ R+ GL      H LRH+F T L   G   R+IQ+
Sbjct: 282 RSVMERLSRHAGLPAGTRMKRGKEVPRWAGL-----YHKLRHTFCTRLAMAGVPPRTIQA 336

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           + GH  + TT  Y +V+++   + +  +
Sbjct: 337 LAGHVSIETTMRYMHVSARAPVEAIRAL 364


>gi|320652975|gb|EFX21175.1| putative integrase [Escherichia coli O55:H7 str. 3256-97 TW 07815]
          Length = 309

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 102/257 (39%), Gaps = 29/257 (11%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNIL 114
           E +    + +L+ T +      R  Q I   ++ R +  + +    L        ++ + 
Sbjct: 77  EAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAMFTALISSGHFLNDNPVQ 136

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            ++ +K +      L++ + + L+D  L     E           + +L   G R  E  
Sbjct: 137 GLKGMKVNEREMGYLSKSECVQLLDA-LAENPDE--------RLAVEILLSTGARWGEVA 187

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
            L  + ++  + T   + K  K R VP+  S+ + I                  +F    
Sbjct: 188 VLEQRRVLHCRITFS-KTKNSKNRTVPISESLFEKI-----------KKRGGKLVFPT-- 233

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              L+  + +  I+ +     +P     H LRH+FA+H + NGG++ ++Q ILGH ++ T
Sbjct: 234 ---LDYPLVRDVIKTVA--PDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQT 288

Query: 295 TQIYTNVNSKNGGDWMM 311
           T IY ++      D + 
Sbjct: 289 TMIYAHLAPDYLQDAVR 305


>gi|282857759|ref|ZP_06266968.1| integrative genetic element Ppu40, integrase [Pyramidobacter
           piscolens W5455]
 gi|282584429|gb|EFB89788.1| integrative genetic element Ppu40, integrase [Pyramidobacter
           piscolens W5455]
          Length = 336

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 93/248 (37%), Gaps = 25/248 (10%)

Query: 63  IRQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           + +++  +I  ++   +  ++    ++ R LS +   L +  ++    +     +  LK+
Sbjct: 100 LSEITAEKIDEYVLHLKNVERNSGGTINRKLSALSKILSWGAEKGYIAKKP--KVPRLKE 157

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           S    R L+E + + +++        +  +     S I+  L   G+R  E    + +++
Sbjct: 158 SVGRLRFLSEAEEIRVLNYF-----KDNGYRVEYLSCIV--LVDTGIRTGELFKASVKDV 210

Query: 182 MD---DQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                D   + ++  K +  R VPL      A+ E          L+     F       
Sbjct: 211 DWNAGDHGIIILRDTKNNDTRSVPLTKRAADALKE-------LSGLSPNHEQFVPKEDWL 263

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
            +  +  R                 H LRH+ A+ L+  G  L S+   LGH  L TT+ 
Sbjct: 264 RSAWLKMRETLGYAD----DKFMVPHILRHTCASRLVQKGAPLYSVAKWLGHRNLMTTRR 319

Query: 298 YTNVNSKN 305
           Y ++   +
Sbjct: 320 YAHLRPDD 327


>gi|262381576|ref|ZP_06074714.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|262296753|gb|EEY84683.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
          Length = 406

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 58/286 (20%), Positives = 114/286 (39%), Gaps = 26/286 (9%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSLKRSL 92
            T+Q YE  TR    F+    E +++   +  L    I  F +  +  +     S    L
Sbjct: 132 KTVQRYETTTRYLEEFIK--KEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSAITRL 189

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +K  ++   +     +      R  K   + P  L   +       ++L      K +
Sbjct: 190 KNLKKIIRTALENDWIKKDPFAYYR-FKLEETDPEFLTMDEIK-----IILAKEFTIKRV 243

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQG---KGDKIRIVPLLPSVRK 208
           +      ++ ++  GL  S+   L+P++++ D    L I+    K   +  +P+LP    
Sbjct: 244 EQVRDVFIFCVF-TGLAFSDVKDLSPEHLVRDNKGELWIRKNRQKTKIMCNIPVLPVAAS 302

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            + +Y ++      L   LP+        L+      Y++++    GL  +   H+ RHS
Sbjct: 303 ILEKYKNVAECTGKL---LPV--------LSNQRMNSYLKEIADVCGLQKNLCTHSARHS 351

Query: 269 FAT-HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +AT   L+NG  + ++  +LGH   S T+ Y  V  +N    M ++
Sbjct: 352 YATSICLANGVSMENVAKMLGHADTSVTKHYARVLDQNIFKDMQKV 397


>gi|120600872|ref|YP_965446.1| phage integrase family protein [Shewanella sp. W3-18-1]
 gi|120560965|gb|ABM26892.1| phage integrase family protein [Shewanella sp. W3-18-1]
          Length = 405

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 48/289 (16%), Positives = 102/289 (35%), Gaps = 38/289 (13%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK----RRTQKIGDRSLKRSL 92
            +Y           +++   ++T + + +      R ++ +    +   K+   +     
Sbjct: 112 SNYSIWISAGKHLRSYHGRAELTFEELDKKFLEGFRKYLLEEPLTKSKSKLAKNTASSYF 171

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           + +++ L    +  I  ++ +  ++++K  N+    L   +   +           T+  
Sbjct: 172 NKVRAALNEAYREGIIRDNPVQRVKSVKAENTQRTYLTLDEVRAM-----------TRAE 220

Query: 153 DARNSAILYLLYGC--GLRISEALSLTP-QNIMDDQSTLRIQGK-------GDKIRIVPL 202
              +      L+ C  GLR S+   LT  +         RI  K       G+ +  + L
Sbjct: 221 CRYDVLKRAFLFSCTTGLRWSDIQKLTWKEIEEFQDGHYRIIFKQTKLLNAGNSLVYLDL 280

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
             S  K + E           +    +F+G++            +       G+    T 
Sbjct: 281 PDSAVKLMGE---------RQDKTERVFKGLKYSSYT----NVALLHWAMLAGVQKHVTF 327

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           H  RH+FA   L+ G D+ S+  +LGH  L TT+IY ++        M 
Sbjct: 328 HVGRHTFAVAQLNRGVDIYSLSRLLGHSELRTTEIYADILESRRVTAMR 376


>gi|309776072|ref|ZP_07671063.1| site-specific recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916023|gb|EFP61772.1| site-specific recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 283

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 66/310 (21%), Positives = 120/310 (38%), Gaps = 42/310 (13%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           I +F+ +   + +L    IE   S LT+Q Y  D  +   +L+            + LS 
Sbjct: 4   IEAFQKIDSFKTYL----IEEEKSTLTIQKYIRDVTRLFTYLSSE----------QTLSK 49

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS---- 124
             I A+  +   +     S+   L  +  FL ++   +         ++ LK        
Sbjct: 50  QLIIAYKEELM-KTYTSASINSMLVPVNCFLSFIGLTE-------CRVKLLKIQKRTCIE 101

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
             R L +K+   L+   L          D R   +L  +   G+R+SE   +T + +   
Sbjct: 102 KERELTKKEYSRLLQAALNQ-------HDERLYLLLQTICATGIRVSEHSFITVEALKCR 154

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           ++T+  +GK    R V     +R+ +L+Y               +F    GKPL+     
Sbjct: 155 KTTVHNKGK---TRNVFFPAKLRQQLLKYCRKLNIKTGC-----IFITKTGKPLDRSNIW 206

Query: 245 RYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           + +++L R   +       H LRH FA    S   D+  +  ILGH  + TT++YT  + 
Sbjct: 207 KSMKKLCRVANVSSHKVFPHNLRHLFAFTFYSMEKDVVRLADILGHSSIETTRMYTMTSF 266

Query: 304 KNGGDWMMEI 313
           +     +  +
Sbjct: 267 QKHEKTLSRM 276


>gi|313125477|ref|YP_004035741.1| site-specific recombinase xerd [Halogeometricum borinquense DSM
           11551]
 gi|312291842|gb|ADQ66302.1| site-specific recombinase XerD [Halogeometricum borinquense DSM
           11551]
          Length = 310

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 55/304 (18%), Positives = 107/304 (35%), Gaps = 37/304 (12%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G S  T+  Y    ++F         E         +    +  ++     + +   + +
Sbjct: 28  GRSHRTINEYSRTLQRFF-------HEHFPELDPEDVEVHHVEQYLRILVERDLAQNTKR 80

Query: 90  RSLSGIKSFLKYLKKR---KITTESNILNM--RNLKKSNSLPRALNEKQALTLVDNVLLH 144
           R L  + SF  +  KR   +  T +    +     K+ +  P     + A  +V  +   
Sbjct: 81  RYLESLSSFYAWAMKRPRYEDITGNPAAVVLEEVPKQIHDRPDCATWENAEKIVHAID-- 138

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLL 203
                   D R+  +  +L   G R++EAL++T ++++ +   +R+   KG K  ++P+ 
Sbjct: 139 --------DPRDKTVAVVLAKTGCRVTEALTITREDLLLEDGFIRLTNRKGGKTTVIPVD 190

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGL------ 256
               + I          ++ N    LF   R    L     +R +R+     G+      
Sbjct: 191 DETVRMIQRLQF-----IDQNTSEYLFASSRTGNQLTRERIRRKVREAAVKTGVMEEGET 245

Query: 257 --PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
                 T HT R  F T + + G     +Q I G     T  IYT ++        ++  
Sbjct: 246 RFHKKFTPHTFRTVFTTLMRNQGMPDHILQYIRGDSESETIDIYTRIDRNQAQQEYLQAI 305

Query: 315 DQTH 318
              H
Sbjct: 306 KPLH 309


>gi|56963947|ref|YP_175678.1| phage integrase family site specific recombinase [Bacillus clausii
           KSM-K16]
 gi|56910190|dbj|BAD64717.1| phage integrase family site-specific recombinase [Bacillus clausii
           KSM-K16]
          Length = 335

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 63/315 (20%), Positives = 105/315 (33%), Gaps = 43/315 (13%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
            +  + +   L  ++G    T++ Y  D   F  +L          +    +  T+   +
Sbjct: 4   FQWVERFTYALA-DKGRRPSTVRRYRYDLLDFFKWL--------DDKDFHSMEQTDAERY 54

Query: 75  ISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS----------- 122
             +   ++    R+++R  S ++ F  +L   K      +L                   
Sbjct: 55  FYELIESRSYQTRTIRRVASVLRQFTAFLMAEKQLASHPLLTYDPPPLEAEPLQPHEWVN 114

Query: 123 -NSLPRALNEKQALT-LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
              +   L   Q+   L DN LL     TK     N A+  LL   GL + E   L   +
Sbjct: 115 AKEIAAILRSSQSEEGLTDNQLLARPQLTKR----NFAMFLLLAHYGLTLQELCDLQMND 170

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKP- 237
           +   + TL I+      R + L P   K +  Y+ L P  +   L+   PLF        
Sbjct: 171 VNFVKGTLLIRRDSGHDRQLVLCPKYAKQLHAYWTLIPEPVRPRLHTDDPLFVAFDFTRR 230

Query: 238 -------------LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
                        L     Q+ IR      GL    +A   RHSF   L+  G    +IQ
Sbjct: 231 TYHWSYENDAPKALTEIALQKMIRTEVARAGLRKGISAQHFRHSFLLKLMLAGEQWTTIQ 290

Query: 285 SILGHFRLSTTQIYT 299
              G   + + + Y 
Sbjct: 291 QKAGLKSMLSLRRYA 305


>gi|330814558|ref|YP_004362733.1| Phage integrase family protein [Burkholderia gladioli BSR3]
 gi|327374550|gb|AEA65901.1| Phage integrase family protein [Burkholderia gladioli BSR3]
          Length = 611

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 69/370 (18%), Positives = 126/370 (34%), Gaps = 89/370 (24%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS----------KRRTQK-- 82
           T ++Y  +  +F+++     E    + +I        +AF++            R     
Sbjct: 254 TQRAYWRELERFVLWCVL--ERGRPMSSILVDDCEAYKAFLANPSDAFRGPPASRASGRW 311

Query: 83  -------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS---------LP 126
                  +   S + ++  +++   +  K +    +  + + + K             LP
Sbjct: 312 RPFALTPLSLDSQRYAVRTLRAAFDWFVKVRYLAGNPWVAVTDPKPVKRATKLQVQRALP 371

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL--------SLTP 178
             +  +    L D           W  A   A++ L+   GLRI EA+            
Sbjct: 372 IDVWSRVRAELADRAEGFGPQGPDWRVA--RALVLLMGDAGLRIEEAVTAERGGLQWWPA 429

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIR 234
           ++ +     LR+ GKG+K RIVPL     +A+ E++     DL+       +LPL     
Sbjct: 430 EDEIPATWMLRLIGKGNKERIVPLTEDAVEALREHWQDRGLDLDALGANADRLPLVAPTV 489

Query: 235 GKP---------------------LNPGVFQRYIRQL----------------RRYLGLP 257
             P                       P   +R + +                 R+  G  
Sbjct: 490 VPPTPAGRDKFGVTDTGQVTRVAGYTPRAARRVVTRALGRLLEQLPDLEESARRQLAG-- 547

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
             T+ H  RH+F T   + G  +  +Q +LGH  L TT IY N   +     M +   + 
Sbjct: 548 --TSPHAFRHTFGTQSAAAGMAIEVLQQVLGHGSLQTTTIYVNAEQQR----MRQESAKY 601

Query: 318 HPSITQKDKK 327
           H  +  +D K
Sbjct: 602 HARLAARDLK 611


>gi|269977407|ref|ZP_06184379.1| tyrosine recombinase XerC [Mobiluncus mulieris 28-1]
 gi|269934323|gb|EEZ90885.1| tyrosine recombinase XerC [Mobiluncus mulieris 28-1]
          Length = 225

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 88/227 (38%), Gaps = 29/227 (12%)

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +   + S  + F  +  +           +  +K+    PR ++E      +D     
Sbjct: 17  PETRHSAFSSFRQFFAWAYRTGRLETDPAAGLPAIKRFVPPPRPISELDFEAALDQADER 76

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPL 202
           T             IL L    GLR SE   +  ++I  D    +L + GKG K R+VP+
Sbjct: 77  T-----------RLILLLAGKMGLRRSEICLVHARDIQQDLLGYSLVVHGKGGKTRVVPI 125

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--RGKPLNPGVFQRYIRQLRRYLGLPLST 260
             S+   +              I   +F  +  R   L  G   +  +++     LP   
Sbjct: 126 PDSLVFPLRR---------AGEIGGWVFPSLTAREGHLTSGTVAKLAKRV-----LPTGV 171

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
             H LRH FAT +     DLR++Q +LGH ++STTQ Y  ++ +   
Sbjct: 172 CLHQLRHRFATIVYLRTKDLRAVQMLLGHDKVSTTQRYVAMDDQRLR 218


>gi|198283395|ref|YP_002219716.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198247916|gb|ACH83509.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
          Length = 331

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 71/315 (22%), Positives = 119/315 (37%), Gaps = 50/315 (15%)

Query: 2   EGNNLPEIV-SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
             + LPE      L      +L++LE  R  S  T         +   +LA YT  +   
Sbjct: 48  SASPLPERAGDPPLAAVMPLYLKHLEHLR--SPETA---RFHAARITPWLAQYTASEAPK 102

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
                       A I +  T      ++ RSL  +K  L    ++++T E+    ++ L 
Sbjct: 103 CA----------AMIIRDMTGAYAPATINRSLGALKKALTLAWEQELTPENYGARIKRLP 152

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           + N     L  +Q   L        SH +  +     A +++    G R  E   L  ++
Sbjct: 153 EHNERHIYLTLEQVNEL-------ASHASDPVA----AAIWIALFTGCRRGEITKLKAED 201

Query: 181 IMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           + +   T+R    K  K R VP++  +R  +                +PL       P+N
Sbjct: 202 VGETTITIRAGNTKTLKTRTVPIIGPMRLWL--------------PFIPL-------PIN 240

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               +   R+ R   GLP     H LRHS A+ LL++G DL +I  ILGH     T+ Y 
Sbjct: 241 AEGLKSGFRRAREKAGLP-HLHFHDLRHSCASILLASGADLYTISRILGHSSTKMTERYA 299

Query: 300 NVNSKNGGDWMMEIY 314
           ++ +      +   +
Sbjct: 300 HLQTDAQSIALERAF 314


>gi|323691674|ref|ZP_08105936.1| hypothetical protein HMPREF9475_00798 [Clostridium symbiosum
           WAL-14673]
 gi|323504308|gb|EGB20108.1| hypothetical protein HMPREF9475_00798 [Clostridium symbiosum
           WAL-14673]
          Length = 317

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 55/285 (19%), Positives = 107/285 (37%), Gaps = 27/285 (9%)

Query: 46  FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR 105
           +   +  +    I    + +++   +  FI  R+++ +   +++  L  +KS ++  ++R
Sbjct: 40  YATIIQKHIRPSIGTVEMEEMNNEILSEFILDRQSRGLSANTMRLILFLLKSIIRAGERR 99

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
            I      L+    K      + L++     L+  +    ++    +    S  +     
Sbjct: 100 GICPAEP-LDFFLPKDRGYEMKLLSQDNRRKLLSWLAGCRTNFELGLLLSLSTGI----- 153

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
              R+ E   +  +++  ++  L I+    +IR      +  K +L             I
Sbjct: 154 ---RVGELCGVKWEDVDLEEGVLHIRRTVSRIRNTDQKNTAAKTVLYIGSPKTGTSQREI 210

Query: 226 QLPLF----------------RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
            LP F                   R   + P   QR  + L R L LP     H LRHSF
Sbjct: 211 PLPDFMIPRLKEKKREAGCYLLTGRTGCMEPRGVQRRFKNLLRKLRLP-DVNIHALRHSF 269

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
           A+  + NG D +S+  ILGH  +  T  IY + N      +M ++
Sbjct: 270 ASQWIENGFDSKSLSEILGHSSVKITMDIYVHSNMSQKKVYMDQM 314


>gi|304382636|ref|ZP_07365130.1| integrase [Prevotella marshii DSM 16973]
 gi|304336261|gb|EFM02503.1| integrase [Prevotella marshii DSM 16973]
          Length = 429

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 61/286 (21%), Positives = 106/286 (37%), Gaps = 24/286 (8%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLS 93
           TLQ Y    + F  FL        +   + +L Y  I  F    RT       +  R + 
Sbjct: 151 TLQKYNVCKKHFSNFLRDKYGR--SDIRLSELGYIVIHDFDIYLRTVVGQNPNTATRMMK 208

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
             K+     +K  +      LN+R   +  +    L +++ L +      +       ++
Sbjct: 209 TFKTITILGRKLGVLHHDPFLNIRFHMEPVNR-GFLTDEEILKI-----ANKDFGIGRLE 262

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
                 ++  +  GL   +  +L P+NI      Q  +  + K      V LL   +  I
Sbjct: 263 LVRDVFVFSCF-TGLAYIDVYNLAPENIVTLNGKQWIMTKRQKTSVETNVLLLDIPKSII 321

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            +Y      D           G     L       Y++++    G+  + T H  RH+FA
Sbjct: 322 AKYSGKTYRD-----------GKLFPMLTNQKLNSYLKEIADICGIKKNLTFHLARHTFA 370

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           T  LS G  + S+  +LGH  + TTQ+Y  + +K     M E+ D+
Sbjct: 371 TMSLSKGVPIESVSKMLGHTNIKTTQLYARITNKKIEHDMDELADK 416


>gi|261416592|ref|YP_003250275.1| integrase family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373048|gb|ACX75793.1| integrase family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326868|gb|ADL26069.1| site-specific recombinase, phage integrase family [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 278

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 56/292 (19%), Positives = 109/292 (37%), Gaps = 27/292 (9%)

Query: 22  LQNLEIE-RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           L  L+ +   L+ LT+++Y  + ++  +F      E +T +T        +R +     T
Sbjct: 8   LDYLKKDADELAPLTVRTYYWNLKKIALFEPGLECECVTSET--------VRNYKRYLET 59

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
               + ++ ++LS  + F   +K   +       N++ + ++ S    L  ++   L  +
Sbjct: 60  LHNKEATVVKALSVFRIFCNKMKADGVIHGDPFENVK-VGRAYSRRGFLTLRELKHLYLS 118

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            +      T+  D      L+  +  GLR  +  +L     + D    +   K  +   +
Sbjct: 119 YMESHVALTRAEDDVMRVFLFSCF-TGLRYGDLRTLDAS-EIFDWKIRKQMHKTGEAVYI 176

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+    R  +                 PL  G     ++   F R +R+  + LG     
Sbjct: 177 PIPVQARLLL---------------PNPLTSGRVFHVVDNSTFNRTLRKAAKKLGHYKHV 221

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             H  RH+FAT  ++ G  L +   +LGH  L TT IY           M +
Sbjct: 222 HCHLARHTFATTCITIGIPLPATSKLLGHRNLDTTLIYAKYVDTFLDKEMKK 273


>gi|46581232|ref|YP_012040.1| phage integrase family site specific recombinase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46450653|gb|AAS97300.1| site-specific recombinase, phage integrase family [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 394

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 98/258 (37%), Gaps = 40/258 (15%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRK---------ITTESNIL------NMRNLKKSNSL 125
           + +  +++   L  ++    Y ++            + ++  +       +R  +     
Sbjct: 139 RGLSAQTVLHCLKAVREVYNYARETPHPDFPERMLYSGKNPAVLSRRGHGVRLPRSDARR 198

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
            R LN+ +   L+     +    ++  D     ++ +    G+R  E + L  ++I  D 
Sbjct: 199 LRILNDAEISALLSYRGQNVVETSELHD-----MILISLDTGMRAGELVRLRTEDIDVDH 253

Query: 186 STLRIQ-------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
            T+RI         KG + RIV       ++I            +     LF G  G   
Sbjct: 254 GTIRIYSGSDAGITKGGRTRIVHAGHLFAESI------TMLRRRVGSPGLLFPGRGGAVR 307

Query: 239 NPGVFQRYIRQLRRYLGLPLSTT-------AHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           N     R +  +   LGL    T        HTLRH++AT +L  G D+ +++ +LGH  
Sbjct: 308 NTTAVSRAMAHICATLGLNADVTDDRNRIVWHTLRHTYATRMLEAGIDIYTLKELLGHSS 367

Query: 292 LSTTQIYTNVNSKNGGDW 309
           ++ T+ Y ++  +   + 
Sbjct: 368 VAVTERYLHLCDRAKRNA 385


>gi|300933456|ref|ZP_07148712.1| IntIdelta1 protein [Corynebacterium resistens DSM 45100]
          Length = 263

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 91/218 (41%), Gaps = 28/218 (12%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
             T+ ++ GKG K R + L  S+  ++ E         
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWW 199


>gi|213420336|ref|ZP_03353402.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 141

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 64/148 (43%), Gaps = 11/148 (7%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + +L  L +ER L++ TL +Y  D    + +L          +T+      +++  
Sbjct: 5   LARIEQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRG------KTLATAQADDLQTL 58

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +++R        S  R LS ++ F ++L + K   +     + + K    LP+ L+E Q 
Sbjct: 59  LAERVEGGYKATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYL 162
             L+   L+        ++ R+ A+L +
Sbjct: 119 ERLLQAPLIDQP-----LELRDKAMLEV 141


>gi|114809972|gb|ABI81491.1| IntI1 [Acinetobacter baumannii]
          Length = 239

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 91/218 (41%), Gaps = 28/218 (12%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVNWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
             T+ ++ GKG K R + L  S+  ++ E         
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWW 199


>gi|300928761|ref|ZP_07144276.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 187-1]
 gi|300463241|gb|EFK26734.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 187-1]
          Length = 184

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 43/148 (29%), Positives = 62/148 (41%), Gaps = 1/148 (0%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAIL 211
            AR+  ++ L Y  G+RISE L L  Q++  ++  + I+  K     + PL    R+A+ 
Sbjct: 11  GARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVE 70

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
            +          +    +F   RG  L+     R IR      G    T  H LRH+   
Sbjct: 71  RWTLERANWKGADRTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGY 130

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            L   G D R IQ  LGH  +  T  YT
Sbjct: 131 ELAERGADTRLIQDYLGHRNIRHTVRYT 158


>gi|239949848|gb|ACS36646.1| phage-like integrase [Pseudomonas aeruginosa PAO1]
          Length = 333

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 93/238 (39%), Gaps = 32/238 (13%)

Query: 77  KRRTQKIGDRSLK---RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +RR  ++   ++    R LS +  F + ++      E+ +  +R +K        L+  Q
Sbjct: 107 QRRLTEVKPETVNHEQRYLSAV--FSELIRLGSWHKENPLGKVRQIKTDQVELTFLSLDQ 164

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++     T++ T  +         L    G R  EA SLT   +   +     + K
Sbjct: 165 VARLLEECKASTNNHTYPVA-------LLCLATGARWEEAESLTRGAVHGGKVHYH-RTK 216

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
             + R VP+   + + I        F + +     LF   R             R   + 
Sbjct: 217 NRQSRSVPIPDELERLI--------FKVGMPGSGRLFMSCR----------AAFRCAYQR 258

Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            G        H LRH+FA+H +  GGD+ ++Q ILGH  ++ T  Y +++ ++    M
Sbjct: 259 CGFQTPGQMTHILRHTFASHYMMGGGDILTLQRILGHSSITMTMRYAHLSPEHLASAM 316


>gi|153009974|ref|YP_001371189.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188]
 gi|151561862|gb|ABS15360.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188]
          Length = 315

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 100/267 (37%), Gaps = 29/267 (10%)

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
           +E +  +         + + I   R +   + ++ R ++ +   L+  K  K+    N+ 
Sbjct: 70  DEILKGERFSGFDQQMLDSVIGSLRERGNSNATINRKMAALSKLLR--KAHKMGDIFNLP 127

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
                K+     R L  ++   L   +                 +   L   G R+ EA+
Sbjct: 128 EFVRQKERVGRIRFLEYEEEKRLFAAIKSRCEDS--------YRLSLFLVDTGCRLGEAI 179

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
            +T  ++ D + T  +  K ++ R VPL    RKA            +  ++ P      
Sbjct: 180 GVTWNDVQDQRVTFWL-TKSNRSRNVPLTRRARKA--------AHIPHEKLKGPF----- 225

Query: 235 GKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
              LN   F++   + +  +GL        H LRH+ A+ L+  G D+R +Q  LGH  L
Sbjct: 226 -SMLNQVRFRQIWNEAKMEVGLGTDDQVVPHILRHTCASRLVRGGIDIRRVQMWLGHQTL 284

Query: 293 STTQIYTNVNSKNGGDWMM--EIYDQT 317
             T  Y ++ + +    +   E++   
Sbjct: 285 QMTMRYAHLATHDLDSCVKVLEVHSNA 311


>gi|153809551|ref|ZP_01962219.1| hypothetical protein BACCAC_03869 [Bacteroides caccae ATCC 43185]
 gi|149127796|gb|EDM19020.1| hypothetical protein BACCAC_03869 [Bacteroides caccae ATCC 43185]
          Length = 443

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 54/286 (18%), Positives = 98/286 (34%), Gaps = 21/286 (7%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKI 83
           L +    +  T   Y    R    FL       ++   ++QL    I AF    RT ++ 
Sbjct: 125 LRVGVNRAASTFYQYRNTCRILGEFLKERYH--VSDMPVKQLDENFIEAFDMYMRTTRRF 182

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
             R++   ++ +KS +     R I   S        +K       L E +    +D    
Sbjct: 183 MPRTILGHINRLKSVMMLAVFRGIIPFSPFKGY-APQKPVFKQMYLTEDE----LDRFAN 237

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGDKIRIVPL 202
            T         R+  +       G+   +  SLT  N++  D  +L I       R    
Sbjct: 238 TTYDTPNRNFTRD--MFLFSCWTGICYCDMRSLTAANLVRADDGSLWIHT----ERQKTG 291

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            P   + +     +      ++    L        L      R+++++    G+    + 
Sbjct: 292 TPECVRLMEIPLKIVEKYKGMDSNGKLLP-----MLTKESMNRHLKKMSVMCGINRPISF 346

Query: 263 HTLRHSF-ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           H  RH+F +   LS G  + ++  I+GH  ++TTQ Y  V      
Sbjct: 347 HQARHTFGSIICLSQGIPIETVSKIMGHRHITTTQRYAKVTQDKID 392


>gi|325298368|ref|YP_004258285.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317921|gb|ADY35812.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 404

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 51/284 (17%), Positives = 103/284 (36%), Gaps = 25/284 (8%)

Query: 33  KLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
             TL  Y+   R+   F+   Y    I+++ I  +  T+   ++  R   K  + +  + 
Sbjct: 131 PATLAKYDRCYRRLEEFMKVKYNISDISLKEIGHMFITDFENYL--RTESKCNENTTAKF 188

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           +   K  +   K           N + ++        L + +   ++          TK 
Sbjct: 189 MQTFKMIVIIAKNNGWIYTDPFSNYK-IRLKRVDRGYLTDAELQKIM-----KKKFPTKR 242

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRK 208
           ++      L+  Y  GL   +   L   +I    D +  +          +   L  + +
Sbjct: 243 LEQVRDVFLFSCY-TGLSYVDVKELKASDIRISFDGKPWIMTHRHKTDTPVNVPLLKIPQ 301

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           AIL+ Y           +  L +G     L+      Y++++    G+  + T H  RH+
Sbjct: 302 AILQKY-----------EGQLPKGQLLPVLSNQKLNSYLKEIADLCGINKNITFHLARHT 350

Query: 269 F-ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           F  T  L+ G  + ++  +LGH  + TTQIY  + ++     M 
Sbjct: 351 FATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNEKIRKDME 394


>gi|153956217|ref|YP_001396982.1| hypothetical protein CKL_3621 [Clostridium kluyveri DSM 555]
 gi|146349075|gb|EDK35611.1| Conserved protein [Clostridium kluyveri DSM 555]
          Length = 199

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 79/193 (40%), Gaps = 8/193 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L +++A +L   +     +       R+  I  + Y CGLR+SE   L  Q+    + 
Sbjct: 10  KYLTQQEAYSLFKTI----ENTYTSHSLRDLVIFRIAYRCGLRVSEIALLKMQDYNASKG 65

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            L  +           L S  K IL+ Y +       +    LF   +  P++       
Sbjct: 66  ELYCRRLKGSNNNTLRLDSKTKYILDKYIVENNI--TSTSQVLFSSQKNNPISRQTLDYL 123

Query: 247 IRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +++     G+   +    H L+H+ A HL  +  D++ +Q  LGH  +S T+IY    +K
Sbjct: 124 MKKYCSMAGIEDKSKHHFHALKHTTAVHLAESDMDIKELQWWLGHKSVSNTEIYFQFTTK 183

Query: 305 NGGDWMMEIYDQT 317
                  ++ +++
Sbjct: 184 QQDRMYAKLDEKS 196


>gi|304384354|ref|ZP_07366765.1| integrase [Prevotella marshii DSM 16973]
 gi|304334670|gb|EFM00952.1| integrase [Prevotella marshii DSM 16973]
          Length = 448

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 54/312 (17%), Positives = 110/312 (35%), Gaps = 29/312 (9%)

Query: 8   EIVSFELLKERQNWLQNL--EIERGL-SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTI 63
           E     L+    ++L +   ++E GL SK TLQ Y    +    FL   +    I ++ I
Sbjct: 138 EYRKHTLITLYDDFLTDYAQKVECGLKSKRTLQKYRAVYKHLKSFLQTRHHLSDIALKEI 197

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           +    T+   F+       +   ++      ++  +    +          +  N+ +  
Sbjct: 198 QPTFATDFETFL--LTYCHLSHNTVWLYSFPVRMLMHRAVENGWLVRYPFSDY-NISQQR 254

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--- 180
                L +++   L+D   L               +       GL   +  +L  +N   
Sbjct: 255 PERVFLTKEEIRLLIDAPKL------TPAQTFIRDMFLFCTFTGLAYIDLKNLREENIVR 308

Query: 181 -IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
              D    +R + +   +    +   +    L+  D      N     P+   +      
Sbjct: 309 SPFDGDVWIRTRRQKTSV---EVNVKLLDIPLQILDKYSGLSNNGYLFPIPSHVYCC--- 362

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIY 298
                  ++ + +  G+    T H  RH+ AT   LSNG  + S+ S+LGH  +++TQIY
Sbjct: 363 -----NQLKTIIKKCGIDKHVTWHVARHTMATVVCLSNGMPIESVSSLLGHKCITSTQIY 417

Query: 299 TNVNSKNGGDWM 310
             + ++  G  +
Sbjct: 418 AKITNEKLGREI 429


>gi|149198038|ref|ZP_01875086.1| Integron integrase [Lentisphaera araneosa HTCC2155]
 gi|149138950|gb|EDM27355.1| Integron integrase [Lentisphaera araneosa HTCC2155]
          Length = 382

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 58/304 (19%), Positives = 111/304 (36%), Gaps = 49/304 (16%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSLKR 90
           S+ T   Y     +FL +        I           + RA+++K     ++   +  +
Sbjct: 100 SEKTKCLYSAWINKFLKWSDREKGWGI----------DDFRAYVNKIVLEDQVSVNTQNQ 149

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           +++ +  F + +    +  ES  L  R   K   LP  ++ +    +             
Sbjct: 150 AITSLNYFYEKVLFISVGEESKALRAR---KKTRLPMIMSREMISEIF-----------S 195

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKA 209
            ++     ++ +LYGCGLR  E   L   +I   +  +R+  G G   R+  L   + K 
Sbjct: 196 RLNGVEFVMVKMLYGCGLRSGELYKLRVGDIDFSEEVIRVVDGSGKVKRVNFLPIILHKE 255

Query: 210 ILEYYDLCPFDLNLNIQL---------PLFRGIRGKP-----------LNPGVFQRYIRQ 249
           +  +          + +L          LF  +                +  + +R   Q
Sbjct: 256 LKNHLKWVKELYENDYKLGVADDWSTYYLFPALDLHRNQQGLKLQRKCFSDRILRRKFSQ 315

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY---TNVNSKNG 306
           +   +G        + R SFA H L  GGD+R++Q +LGH ++  T IY   T +N +  
Sbjct: 316 VLDEMGHKGVFKLASFRDSFAVHYLEGGGDIRTLQKLLGHQKVGQTMIYNDLTQLNKRRI 375

Query: 307 GDWM 310
              +
Sbjct: 376 RSPL 379


>gi|78777136|ref|YP_393451.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
 gi|78497676|gb|ABB44216.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
          Length = 393

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 48/307 (15%), Positives = 116/307 (37%), Gaps = 32/307 (10%)

Query: 41  CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLK 100
               + ++    +       + + +++  EI  + ++   QK    ++++  S + S   
Sbjct: 97  HTLERNIMHYNNHIAPYFGKRELGRITPLEIERWQNQLL-QKYKHLTVQKFRSILFSIYD 155

Query: 101 YLKKRKITTESNILNMRNLKKSNSLP----RALNEKQALTLVDNVLLHTSHETKWIDARN 156
                 +  ++ +  +   K  N++         EK+   ++++            +   
Sbjct: 156 KALHNDLVLKNPLEKVTAPKVQNNIKIEEINPFTEKELNQIIEH-----------ANGYM 204

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-----QGKGDKIRIVPLLP-----SV 206
              + L+   G+R  E ++L   +I  ++ T+++     + K  +  +  L         
Sbjct: 205 KNFIKLMAATGMRPGEIIALKWSDIDFEKRTIKVERTRLRAKKGEDIVDGLTKIKSSNRF 264

Query: 207 RKAILEYYDLCPFDLNL-NIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHT 264
              +   +D     L L +    +F      P  N  +     R++ +  G+      + 
Sbjct: 265 VDMLNATHDSLMAQLELTSNSEYIFLNQSNMPFYNHDIIGVNFRKILKQSGVKARP-LYN 323

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI--YDQTHPSI 321
           LRH+FA+ ++S G D+  +  +LGH  +S T +IYT    ++    + +I   D+     
Sbjct: 324 LRHTFASQMISKGADITWVSKMLGHKDVSITLKIYTKFIQEDDETRLKKIAQMDKFMVKF 383

Query: 322 TQKDKKN 328
              D KN
Sbjct: 384 DNSDDKN 390


>gi|317500069|ref|ZP_07958304.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316898554|gb|EFV20590.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 397

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 57/298 (19%), Positives = 105/298 (35%), Gaps = 34/298 (11%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           +Q    +    E+K+  ++I  +  ++ + +  + + +     ++      +K+      
Sbjct: 104 KQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMKDKGFSYNTINNHKRSLKASFYIAI 163

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           +     ++      + K S  L     EK ALT      L +  +T  +  ++   + +L
Sbjct: 164 QDDCVRKNPF----DFKLSEVLENDTKEKVALTEEQEQALLSFIKTDNVYHKHYDDVLIL 219

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVR 207
              GLRISE   LT  +I      + I                      IR VPL     
Sbjct: 220 LKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGYYIETPKTKSGIRQVPLSRETI 279

Query: 208 KAILEYYDLCPFDLNL---NIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGL 256
           +A        P             LF   +GKP        L   + ++Y +  +     
Sbjct: 280 QAFQRVMKKRPKAEPFVIDGQSNFLFVNHKGKPKVAIDYNALFVRMVKKYNKHHKD--NP 337

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
               T HTLRH+F T L S   + + +Q I+GH  +S T   Y + +       +  +
Sbjct: 338 LPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQRL 395


>gi|323516311|gb|ADX90692.1| integrase [Acinetobacter baumannii TCDC-AB0715]
          Length = 271

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 104/285 (36%), Gaps = 64/285 (22%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVNWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
                +     F  + +   P    +R   +    FQR  ++   
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVE 266


>gi|258651454|ref|YP_003200610.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258653213|ref|YP_003202369.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258653628|ref|YP_003202784.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258653738|ref|YP_003202894.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258653753|ref|YP_003202909.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258653839|ref|YP_003202995.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258653872|ref|YP_003203028.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258554679|gb|ACV77621.1| integrase family protein [Nakamurella multipartita DSM 44233]
 gi|258556438|gb|ACV79380.1| integrase family protein [Nakamurella multipartita DSM 44233]
 gi|258556853|gb|ACV79795.1| integrase family protein [Nakamurella multipartita DSM 44233]
 gi|258556963|gb|ACV79905.1| integrase family protein [Nakamurella multipartita DSM 44233]
 gi|258556978|gb|ACV79920.1| integrase family protein [Nakamurella multipartita DSM 44233]
 gi|258557064|gb|ACV80006.1| integrase family protein [Nakamurella multipartita DSM 44233]
 gi|258557097|gb|ACV80039.1| integrase family protein [Nakamurella multipartita DSM 44233]
          Length = 393

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 63/335 (18%), Positives = 112/335 (33%), Gaps = 66/335 (19%)

Query: 23  QNLEIERGL-SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-- 79
           + LE  R L S  T++ Y     Q+  FL    E         ++    + AF+S  R  
Sbjct: 31  EWLEAHRHLWSPNTVRGYATALSQWWTFLEQRAESGR----WNEIGVPTVSAFVSWMRNG 86

Query: 80  ---------TQKIGDRSLKRSLSGIKSFLKYL--------------------KKRKITTE 110
                           +++  L+ + SF  +                       R + + 
Sbjct: 87  RRVERSLVPEDGPSPETMQARLAAVISFYTWHEAVSGVPVAGRLMRGAPRRAVARGLLSH 146

Query: 111 -------SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID-ARNSAILYL 162
                  +    +R  +     P  L  +Q   ++D    +     +W+   R+  +  +
Sbjct: 147 LDARSGPAPTSLVRVRRSRRHRPPLLMPQQIQAILDGCATYDPDTGEWVGNLRDRLLFAV 206

Query: 163 LYGCGLRISEALSLTPQNIMDDQS---TLRI----------QGKGDKIRIVPLLPSVRKA 209
           L   G+RI EAL L   + +  +     + I          + K  + R V +   + + 
Sbjct: 207 LAESGMRIGEALGLRISDFVMGRGGTPFIEIVPRADNTNGARVKMMRPRRVYVGADLERL 266

Query: 210 ILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ---LRRYLGL-PLST 260
             +Y  L         + +    PL   ++  PL   + +  +R      R  G+ P   
Sbjct: 267 FADYLTLLACTAADMGIAVAADSPLLVNLQRPPLLAALHEGTVRDKTAALRKKGIGPPGW 326

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           T H  RHS AT LL  G     +   LGH  + TT
Sbjct: 327 TPHWFRHSHATALLLAGTAEWVVSRRLGHAHVQTT 361


>gi|284989349|ref|YP_003407903.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284062594|gb|ADB73532.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 397

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 64/300 (21%), Positives = 109/300 (36%), Gaps = 35/300 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + W   LE    LS  T+Q+Y     Q            +    +R+LS   I   + + 
Sbjct: 80  EAWFAGLE---NLSPTTMQAYRNRLDQ-------QVLPGLGNLRVRELSIGNIDRHL-RL 128

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS-NSLPRALNEKQALTL 137
            + K G    K + S +        +      + + +  +LK      P++L   +A TL
Sbjct: 129 VSDKHGPAVAKMTKSVLSGVCGLAARHDALDRNPVRDTGSLKAPTKKAPKSLTADEARTL 188

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------ 191
           +    L      +  D  +  ++  +   G RI EA ++T  ++  D  T+ ++      
Sbjct: 189 LAQ--LDADETARRRDVPD--LVAFMLASGCRIGEAAAVTRGDLDLDAGTVDVRATIVRV 244

Query: 192 ------GKGDKI----RIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNP 240
                  KG+K     R + L P   + +          +     + P+F    G   +P
Sbjct: 245 TGQSLVRKGNKTASGARTLLLPPWCVERLRRRAARPNALEEGAGAEAPVFPAPLGGWRDP 304

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYT 299
              Q  +R      G     T+H LR + AT L   G   R+I   LGH   S TQ +Y 
Sbjct: 305 SNTQADLRAAFDSAGFG-HVTSHVLRKTTATMLDEAGLSARAIADQLGHANPSLTQDVYL 363


>gi|228996473|ref|ZP_04156112.1| DNA integration/recombination/invertion protein [Bacillus mycoides
           Rock3-17]
 gi|228763105|gb|EEM12013.1| DNA integration/recombination/invertion protein [Bacillus mycoides
           Rock3-17]
          Length = 256

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 103/263 (39%), Gaps = 31/263 (11%)

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           ++ +++  R + +   ++++ +  I++ L++    ++ T++     +  K         N
Sbjct: 1   MQNYVNSLRDEGLKRGTIEKIIKVIRNSLEHAIDLELITKNVAAKTKLPKVDKEELTVWN 60

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           E++    +              D+R S + ++    G+R  E L L  +++  D+  L I
Sbjct: 61  EQEVQLFL----------KTAQDSRYSIVFHMALVTGMRQGELLGLRWKDVDLDKGNLTI 110

Query: 191 Q--------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDL-----NLNIQLPLFR 231
                               +R + L  S    + ++  +   +        +    +  
Sbjct: 111 SQTLSHDGKTFLLGGKTKSSLRKILLPASTIAKLKKHRAVVLKEKLSQGEEYHDNDLVMC 170

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
              G P+NP   +R +  L +   +P     H LRH+ AT LL+ G +++ I   LGH  
Sbjct: 171 TPSGTPINPANVRRSLNALIQKAAVPK-IRFHDLRHTHATLLLAKGVNVKVISERLGHSN 229

Query: 292 LSTT-QIYTNVNSKNGGDWMMEI 313
           +  T   Y++V      D + +I
Sbjct: 230 IKITLDTYSHVLPTMQEDAVNKI 252


>gi|163939178|ref|YP_001644062.1| integrase family protein [Bacillus weihenstephanensis KBAB4]
 gi|163861375|gb|ABY42434.1| integrase family protein [Bacillus weihenstephanensis KBAB4]
          Length = 370

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 44/271 (16%), Positives = 108/271 (39%), Gaps = 31/271 (11%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           + +L+   ++ +++  R + +   ++++ +  I++ L++    ++ T++     +  K  
Sbjct: 107 LAKLTSLHMQNYVNSLRDEGLKRGTIEKIIKLIRNSLEHAIDLELITKNVAAKTKLPKAD 166

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
                  NE +         L  + ++++    + A++      G+R  E L    +++ 
Sbjct: 167 KEELTVWNEHEV-----QFFLKAAQDSRYSIVFHMALV-----TGMREGELLGFRWKDVD 216

Query: 183 DDQSTLRIQ--------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
            ++  L I                    +R + L  S    + ++  +   +     +  
Sbjct: 217 LEKGHLTISQTLSHDGKTFLLGGKTKSSLRKILLPASTVAKLKKHRAVVLKEKLSQGEEY 276

Query: 229 -----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                +     G P+NP   +R +  L + + +P     H LRH+ AT LL+ G +++ I
Sbjct: 277 QDNDLVMCTPSGTPINPANVRRSLNALIKKVAVPK-IRFHDLRHTHATLLLAKGVNVKVI 335

Query: 284 QSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
              LGH  +  T   Y++V      D + +I
Sbjct: 336 SERLGHSNIKITLDTYSHVLPTMQEDAVNKI 366


>gi|295841239|dbj|BAJ07017.1| integrase [uncultured bacterium]
          Length = 393

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 56/300 (18%), Positives = 102/300 (34%), Gaps = 63/300 (21%)

Query: 16  KERQNWLQNLE---IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           K+  + L+ L    + R  S  T+++YE   R++  F      +  T +         ++
Sbjct: 116 KDAHDILRRLRKAALMRQYSYRTVEAYEYWVRKYFSFHGRNLGKVFTPEG--------VK 167

Query: 73  AFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           AF+      +K+   + K++L+ +      +   ++    +    +  K    LP  L+ 
Sbjct: 168 AFLEHLVLVRKLAGGTQKQALNALDFLFGDVIGMELGDFGDFARSKRPKM---LPVVLSR 224

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           +    L+             +D        +LYG GLR+ E L L  +++    + + ++
Sbjct: 225 EDMEKLLGE-----------LDGNLFLAAGILYGSGLRLMEVLRLRVKDVDLPLNQILVR 273

Query: 192 -GKGDKIRIVPLLPSVRKAI------------------------------------LEYY 214
            GKG K R+  L    R  +                                     ++ 
Sbjct: 274 DGKGKKDRVTMLPERYRDLLKAHLAEVKQVHARDLALDYAGTSFRPSLVRKYPYAPRQWI 333

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
               F        P         L     QR +    R  G+      HTLRH+FATHLL
Sbjct: 334 WQYVFPAGRLSVDPSTGKSIRHHLRESALQRAVPAAARKAGIDKRVACHTLRHTFATHLL 393


>gi|283786567|ref|YP_003366432.1| fimbrial regulatory protein FimE [Citrobacter rodentium ICC168]
 gi|282950021|emb|CBG89650.1| fimbrial regulatory protein FimE [Citrobacter rodentium ICC168]
          Length = 198

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 69/174 (39%), Gaps = 7/174 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R L  K+   ++       +        R+  ++ L +  G+RISE L L  +++  ++ 
Sbjct: 5   RYLTGKEVQAMM------LAARHGPTGERDYCLILLAFRHGMRISELLDLHYRDLDLNEG 58

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            + I+  K     I PL    R+A+  +          N    +F   RG PL+     R
Sbjct: 59  RINIRRLKNGFSTIHPLRFDEREAVERWSRERAAWRGANRTDAVFISRRGTPLSRQQAYR 118

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            IR      G    T  H LRH+    L   G D R IQ  LGH  +  T  YT
Sbjct: 119 IIRAAGIDAGTVTHTHPHMLRHACGYELAERGTDTRLIQDYLGHRNIRHTVRYT 172


>gi|10956075|ref|NP_052162.1| DNA invertase-like protein [Chlorobium limicola]
 gi|1688244|gb|AAB36935.1| DNA invertase homolog [Chlorobium limicola]
          Length = 182

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 48/180 (26%), Positives = 68/180 (37%), Gaps = 9/180 (5%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L   +   L++      +       AR+  +L L++  GLR+SEA  L    +  +  
Sbjct: 5   KHLVSAEVDRLIE------AAGRSRNSARDRCLLLLMFRHGLRVSEACGLQLSQVDAESR 58

Query: 187 TLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            L + + K       PL     KAI  +  +             F   R  PL+      
Sbjct: 59  VLHVSRLKKGLSTTHPLRTDELKAIRAWLAIR--AKMKPDTDDFFLSNRRGPLSRKTAWL 116

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            IR+     GLPL    H LRH+    L   G D R IQ  LGH  +  T IYT  N   
Sbjct: 117 AIRKYGELAGLPLPAHPHMLRHACGFALADQGADTRLIQDYLGHRNIQHTVIYTAANPAR 176


>gi|296503148|ref|YP_003664848.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis BMB171]
 gi|296324200|gb|ADH07128.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis BMB171]
          Length = 369

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 57/315 (18%), Positives = 115/315 (36%), Gaps = 39/315 (12%)

Query: 18  RQNWLQNLEIERGLS--KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            +++L +    + +S  K T   Y+        F+  +    I +  + +L+   I+   
Sbjct: 65  LKDYLNHWLEIKSMSIEKSTFAGYK-------AFINQHVIPSIGMVALHKLNVIHIQKCY 117

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                + I + S+      +KS L    K+ I + +        KK  +  +   E++  
Sbjct: 118 KTAIDKGIANNSILLMHRILKSALNLAVKQNIISRNPTDFAEIPKKEKTPIQTWTEEEVK 177

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
             + +     S E+++      AI       G+R+ E L L  Q+I  ++ T+ I     
Sbjct: 178 KFLAH-----SQESRYHIGYLLAI-----TTGMRLGEVLGLRWQDIDFEKHTVTINQTSG 227

Query: 196 KI-------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-----FRGIRGKP 237
                          R +P+      A+  +  L   +        L          G+ 
Sbjct: 228 HDNKIKKTAKTNSSKRTIPVPIETIAALKRHKILINKEKLRFGSAYLDQDLINCNEFGRI 287

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
           +    F++   ++   +G+      H LRH+ AT LL  G + + I   LGH  +S T  
Sbjct: 288 IKRAHFRKSFIRMTHKVGI-KEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLS 346

Query: 297 IYTNVNSKNGGDWMM 311
           +Y++V      + + 
Sbjct: 347 VYSHVLPNMQEEAVK 361


>gi|254169412|ref|ZP_04876239.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|289596668|ref|YP_003483364.1| integrase family protein [Aciduliprofundum boonei T469]
 gi|197621648|gb|EDY34236.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|289534455|gb|ADD08802.1| integrase family protein [Aciduliprofundum boonei T469]
          Length = 320

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 54/299 (18%), Positives = 112/299 (37%), Gaps = 30/299 (10%)

Query: 19  QNWLQ--NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           +NW     L+++      TL++Y+   + F  F     E K  +   + L+  ++  F+ 
Sbjct: 4   ENWKDKFFLKMDAARDPETLRTYKKRLKLFENFWKE--ENKTPLPDPQVLTEEDLLRFLV 61

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
             R +      + R+   +  FL++ +       +  + +   K+   L +   +++   
Sbjct: 62  WMRRKGYDQNYISRTYGDVVRFLEFCRN----PNTYYMKLNTPKRVKKLHKYYKDEELEK 117

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GK 193
           L++        E   I  +N   +++L   G+R +EA  LT ++I  D   + I+    K
Sbjct: 118 LLNLF-----SENDIISFQNKVYIWILAYTGMRSAEAGGLTWEDIDFDSEEISIREDVAK 172

Query: 194 GDKIRIVPLLPSVRKAILEY------YDLCPFDLNLNIQLPLFRGIRGK----PLN--PG 241
               R V +   +++ +  Y      Y      +  N    LF   +      PL+    
Sbjct: 173 QGIARTVMMPKELKEILQRYKEVYDKYMEYRKVMGENTLNSLFFKRKKNGVIEPLDKRAR 232

Query: 242 VFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                I +        L  S   H  RH++    +     + ++   +GH  L TT+ Y
Sbjct: 233 TIYNRIYKYLEKHDPELQKSFGLHKFRHTYIRQWVKARARIEAVARQVGHHDLETTRKY 291


>gi|1679807|emb|CAA96221.1| integrase [Haemophilus phage S2]
          Length = 337

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 95/270 (35%), Gaps = 29/270 (10%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKY 101
            +     L      +   +         +    S  +     + ++ R  + +++ F + 
Sbjct: 87  LKNLCANLGDPPANEFNAEIFADYRKRRLDGEFSVNKNNPPKEATVNREHAYLRAVFNEL 146

Query: 102 LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
              RK T E+ +  +R  K+  +    L E+    L+       + +          I+ 
Sbjct: 147 KSLRKWTAENPLDGVRLFKERETELAFLYERDIYRLLVECDNSRNPDLG-------LIVR 199

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           +    G R SEA +LT   +M  + T     K  K R VP+   +   + +       D 
Sbjct: 200 ICLATGARWSEAETLTQSQVMPYKITFT-NTKSKKNRTVPISKELFDMLPKKRGRLFNDA 258

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
             + +  +                    LR  + LP     H LRH+FA+H + NGG++ 
Sbjct: 259 YESFENAV--------------------LRAEIELPKGQLTHVLRHTFASHFMMNGGNIL 298

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            ++ ILGH  +  T  Y +    +    + 
Sbjct: 299 VLKEILGHSTIEMTMRYAHFAPSHLESALK 328


>gi|317504686|ref|ZP_07962650.1| integrase [Prevotella salivae DSM 15606]
 gi|315664190|gb|EFV03893.1| integrase [Prevotella salivae DSM 15606]
          Length = 409

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 53/283 (18%), Positives = 103/283 (36%), Gaps = 29/283 (10%)

Query: 35  TLQSY---ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           T+ +Y     + R F+     Y  E ++   + +    + R +          + S    
Sbjct: 133 TISNYYTTRNNLRTFIE--DKYKVEDLSFSQLTENFIYDFRDY--YLNKLGFQESSFYAV 188

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
            S IK   +   +  +       N++  +    LP+AL+ +    L++        E + 
Sbjct: 189 ASQIKIVCRVAYREGLADTLLFANVKIARGDKKLPKALDRRSLDKLMNTHFGELEEEMET 248

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRI---QGKGDKIRIVPLLPSVR 207
                  +       G    + + L+  + + DD+  L +   + K   +  + LLP   
Sbjct: 249 A----RDLFVFACHTGAAYCDLMGLSKTHLVRDDEENLWMKFNRKKIGVLCRIKLLPEAI 304

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + I +Y       L                +    +Q Y++ LR   G+    T HT RH
Sbjct: 305 RIIEKYRGEERERL-------------LPQMKYATYQSYLKALRLREGIAFPFTTHTARH 351

Query: 268 SFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           +FAT + L  G  + ++  ILGH  +S T+ Y  V  +   + 
Sbjct: 352 TFATLITLEQGVPIETVSKILGHSNVSMTERYAKVTPQKLFEE 394


>gi|229103030|ref|ZP_04233719.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock3-28]
 gi|228680445|gb|EEL34633.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock3-28]
          Length = 368

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 94/273 (34%), Gaps = 31/273 (11%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           +   T  +L+  +I+ F     T K+ +  +      + + L     + + T +      
Sbjct: 100 LGKNTFNKLNVIQIQQFYRNL-TGKLSNSRIILIHRVLNTALNQAIAQNLITTNPAKFAA 158

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             KK  +  +   E++  T     LLH+ +              L    G+R+ E L L 
Sbjct: 159 KPKKERTSIQTWTEEEVKTF----LLHSQNSRYHTG------FILAITTGMRLGEVLGLR 208

Query: 178 PQNIMDDQSTLRIQGKGDKI-------------RIVPLLPSVRKAILEYYDLCPFDLNLN 224
            Q++  D  T+ I                    R +P+      A+ E++     +    
Sbjct: 209 WQDVDFDNHTVTINQTLGHDNKIKQSAKTSSSKRTLPIPIETINALKEHHLFIKKEKLRF 268

Query: 225 IQLPLFRGIRGKPLN-----PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
                   +    ++        F++    + +   +P     H LRH+ AT LL  G  
Sbjct: 269 GNAYNDSNLIVCTMSGNIVYRDYFRKSYYTIIQKANVPK-IKFHDLRHTHATLLLKQGVH 327

Query: 280 LRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMM 311
            + +   LGH  +S T  +Y++V      D + 
Sbjct: 328 PKIVSERLGHSNISMTLSVYSHVLPNMQEDAVK 360


>gi|265994586|ref|ZP_06107143.1| phage integrase [Brucella melitensis bv. 3 str. Ether]
 gi|262765699|gb|EEZ11488.1| phage integrase [Brucella melitensis bv. 3 str. Ether]
          Length = 313

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 95/259 (36%), Gaps = 27/259 (10%)

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
           +E +            + + I   R +   + ++ R ++ +   L+  K  K+    N+ 
Sbjct: 75  DEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSKLLR--KAHKMGDIFNLP 132

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
                K+     R L +++   L   +                 +   L   G R+ EA+
Sbjct: 133 EFIRQKERVGRIRFLEQEEEKRLFAAIKSRCEDS--------YRLSVFLVDTGCRLGEAI 184

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
            LT  +I + + T  +  K ++ R VPL    RKA               ++ P      
Sbjct: 185 GLTWNDIQEQRVTFWV-TKSNRSRTVPLTRRARKA--------SHIPRERLKGPF----- 230

Query: 235 GKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
              LN   F++   + +   GL        H LRH+ A+ L+  G D+R +Q  LGH  L
Sbjct: 231 -SMLNQVRFRQIWNEAKAEAGLGADDQIVPHILRHTCASRLVRGGIDIRRVQMWLGHQTL 289

Query: 293 STTQIYTNVNSKNGGDWMM 311
             T  Y ++ + +    + 
Sbjct: 290 QMTMRYAHLATHDLDSCVK 308


>gi|187779931|ref|ZP_02996404.1| hypothetical protein CLOSPO_03527 [Clostridium sporogenes ATCC
           15579]
 gi|187773556|gb|EDU37358.1| hypothetical protein CLOSPO_03527 [Clostridium sporogenes ATCC
           15579]
          Length = 308

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 110/283 (38%), Gaps = 19/283 (6%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRAFISKR 78
           ++L       G  + T++S E        F  +   + + + + I++L+  +I   I   
Sbjct: 30  DYLNYCTSI-GQREKTIESKE-------KFGKYELIKVVNLDSNIKELTKEKIEKHIINM 81

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R +     + +  +  +++FL Y       T+   + + N+           E++ + L+
Sbjct: 82  RKEGYKGNTYQTYVIKMRAFLSYCFNNNYLTKF-TVKIPNILLEKK--EVYTEEEVIKLL 138

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
               ++T     +      AI   L   G R    L++  +++     ++  +    K +
Sbjct: 139 KKPSINTCLVGDFRSW---AICSFLLSTGCRAETLLNVHVEDVNFSTDSILFRHMKTKRQ 195

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           I   L +  K  L  Y        L  +  LF  + G+ +      + ++   ++  +  
Sbjct: 196 ITVPLSNTLKVNLMEYIQRM---GLKQEDYLFPLLNGEKMKYDTCHQNLKNYFKHRNVKF 252

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               +T R++FAT  L NG  +  IQ  LGH  +  T+ Y N+
Sbjct: 253 HGV-NTFRNTFATMALKNGAGIYLIQKCLGHADIKMTERYINL 294


>gi|326390625|ref|ZP_08212180.1| integrase family protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325993303|gb|EGD51740.1| integrase family protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 399

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 54/314 (17%), Positives = 119/314 (37%), Gaps = 57/314 (18%)

Query: 46  FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR 105
           ++  +  Y +  +    I +L+   I+  ++    + +  R+++ + + +K+ L    K 
Sbjct: 92  YVKIIELYIKPVLGDYKISKLNPLLIQDMLTNMMNKNLSARTIRYTHTILKNALNQAVKW 151

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
           +I + +   N+   K++    + L  +QA   ++  + +              +  +L  
Sbjct: 152 QIISNNPCNNVDLPKQTKQEMKVLTPEQAKKFLEACVYNRWG----------ILFEVLLT 201

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQ---------------GKGDKIRIVPLLPSVRKAI 210
            G+R  EAL L  ++I    + + ++                     R +PL   V K++
Sbjct: 202 SGMRPGEALGLKWEDIDFKNNRIYVKRNLTRTNDGWKLEEPKTPRSRRTIPLPKEVMKSL 261

Query: 211 LEYYDL-----------CPFDLNLNIQLP------------------LFRGIRGKPLN-P 240
            E+                +D + +   P                  +F    G PL+  
Sbjct: 262 KEHKKNQTEEKLKAKETLNYDKDKDKFKPEEWQEKLKDPKVYIDYGFVFAAQNGSPLDMR 321

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYT 299
            V +RY + L +   LP     + LRH+ AT LL+ G + + +   LGH  ++ T   Y+
Sbjct: 322 KVVERYFKPLLKEANLP-DIRLYDLRHTCATLLLAAGENPKVVSERLGHANITLTLDTYS 380

Query: 300 NVNSKNGGDWMMEI 313
           +V      +   ++
Sbjct: 381 HVLPDMQKEAAAKL 394


>gi|302339270|ref|YP_003804476.1| integrase family protein [Spirochaeta smaragdinae DSM 11293]
 gi|301636455|gb|ADK81882.1| integrase family protein [Spirochaeta smaragdinae DSM 11293]
          Length = 416

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 58/296 (19%), Positives = 115/296 (38%), Gaps = 42/296 (14%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           + I ++  +++  F S    + +G R++ ++LS +K+ ++    +++      + +  +K
Sbjct: 132 KPIAKMRRSDVLEFRSFMLDR-VGPRTVNKALSIVKAVIREAIFQEVIDRDPTIGVSKVK 190

Query: 121 -KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
                 P    +++ L +     +       W    +  +       G+R SE L+L  +
Sbjct: 191 LTEKKEPGVFTKEELLLMFPEKGI-----GPWKSITDHTVFLTAASTGMRRSEILALRWE 245

Query: 180 NIMDDQSTLRIQ-----------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
           N+  ++  + +            GK    R   ++P  +K +    DL            
Sbjct: 246 NVNLEKQFINVVEAFKDYRMIEIGKPKWER-SRVVPIPKKLVTRLKDLRDQSPYAKDSDY 304

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGL--------------PLSTTAHTLRHSFATHLL 274
           +F    G  L    + ++ R     +G+              P + T H+ RH+  T LL
Sbjct: 305 VFCYKDGTHLGGTWWSKHFRSACIAIGVIKAKKKVKENEDPNPRNLTPHSFRHTLNTLLL 364

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTN--VNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           SNG D   I++ LG         YT+  ++  NG   M+E       S  +KDKKN
Sbjct: 365 SNGYDSGKIRATLGWTSEKIQDNYTHFSIDHLNGQSDMVE-------SFFEKDKKN 413


>gi|255015356|ref|ZP_05287482.1| putative bacteriophage integrase [Bacteroides sp. 2_1_7]
          Length = 389

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 57/298 (19%), Positives = 99/298 (33%), Gaps = 47/298 (15%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT------------QKIG 84
           +SY          L  Y  +KIT     +++   ++ FI+  RT             K  
Sbjct: 111 RSYYYTLHSLAKHLEAYAGDKIT---FTKVNTEFVKGFIAYLRTAMNFNYENSEKKSKYE 167

Query: 85  DRSLKRSLSGIKSFL---KYLKKRKITTESNILNMRN---LKKSNSLPRALNEKQALTLV 138
             S     +  K F    +   +  I   + +  + N    K  +     L  ++   L+
Sbjct: 168 VLSQNTQHNLYKKFAWVIRKAMQADIMAINPLDKIDNTDKPKPEDGQREFLTIEEIKRLM 227

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQ-GKG 194
           +         T   D             GLR S+   L   ++ +D      LRI+  K 
Sbjct: 228 N---------TPCEDDMLKCAFIFCCLVGLRYSDVKKLVWNDLYEDNEGAIILRIRVTKT 278

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            +    P+     K + E        +    +                  R ++      
Sbjct: 279 KRCEDFPISKEALKWLPERIGSGDEKIFKLPKN-------------DNSNRKLKHWCTLA 325

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           G+  + T H  RH+ AT  LS G  + ++  +LGH ++STTQIY  V   N    + +
Sbjct: 326 GITKNVTFHVARHTAATLNLSLGVPIETVSKLLGHTKISTTQIYAKVIDANKKAAVHK 383


>gi|237795337|ref|YP_002862889.1| site-specific recombinase [Clostridium botulinum Ba4 str. 657]
 gi|229261813|gb|ACQ52846.1| site-specific recombinase [Clostridium botulinum Ba4 str. 657]
          Length = 376

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 53/350 (15%), Positives = 119/350 (34%), Gaps = 79/350 (22%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR---------- 79
             ++ TL+ Y    + +  +L             + ++  ++  F++  +          
Sbjct: 39  NYARNTLRMYCQHLKLYFEYLQQRE------LDFQDITIDDLALFVNWLQNPYESLKVIP 92

Query: 80  ----TQKIGDRSLKRSLSGIKSFLKYLKKRKITTES------------------------ 111
                     R++   ++ + +F  Y+ + +  + +                        
Sbjct: 93  GTHIESARSPRTINIIVNIVLAFYDYILRHEKYSNNISDRLKKFVSIPSRNFKGFLYGIA 152

Query: 112 -----NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
                   N+  LK   S P+ LN+++  TLV              + R+  +L LLY  
Sbjct: 153 YEHKKVASNILKLKVPKSKPKTLNKEEIETLVRAC----------NNLRDKFLLSLLYET 202

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKI-----------RIVPLLPSVRKAILEYYD 215
           G+RI EALSL  ++       + ++ +G              R + +  ++    +EY  
Sbjct: 203 GMRIGEALSLWIEDFDISDMVIDLKDRGQLENNAEIKTVSSPRRIDISQNLADMFMEYIA 262

Query: 216 LCPFDLNLNIQLPLFRG--IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
               +      + +      + K +         R L++   +    T H  RHS  T L
Sbjct: 263 EYHTEEVETNHIFIKISGDNKYKAMTYTDVDNLFRTLKKKTEI--YVTPHMFRHSSLTVL 320

Query: 274 LSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQTHPSIT 322
              G     ++   GH  + TT   Y + + +     + + +++T P++ 
Sbjct: 321 RMAGWQPELLRIRAGHKNIYTTMNTYIHPSDEE----ITKEFEKTRPNLD 366


>gi|288924290|ref|ZP_06418310.1| integrase family protein [Frankia sp. EUN1f]
 gi|288344362|gb|EFC78871.1| integrase family protein [Frankia sp. EUN1f]
          Length = 358

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 100/295 (33%), Gaps = 27/295 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKIT-------------IQTIRQLSYTEIRAFIS 76
           G +  T + Y    R F+ +L    +E  +                   ++   +  F+ 
Sbjct: 43  GRAANTRRIYLHAGRLFVAWLLALPDEPGSDTVDAHGRPVLPRPAGPEDITRQHVEGFLV 102

Query: 77  KRRT-------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
             RT          G   + +    ++ ++ +L   +    S +  ++  K   ++   L
Sbjct: 103 AFRTTPTPRCPNGPGQAYVNQIYRALQQWMGHLLDEEDIDRSPMERIKAPKIDQTIKPEL 162

Query: 130 NEKQALTLVDNVLL------HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            +     L+                 +++ AR+ A++ +    G R +E   +T  ++  
Sbjct: 163 TDDHVKALLATCKAIKTGHAKLDKRARYVAARDQALIRVFLDLGARRAEVAGMTLPDVDL 222

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
              T+++ GKG + R+  +  +   A+ +Y  L                   KPL     
Sbjct: 223 HLRTIKVTGKGGRDRLPGIGQTTALALAKYQRLRAEKQAAASAAYWLDENGRKPLTHSGL 282

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            + I +  + +G P  T  H  R   A   L NGGD  ++    G       + Y
Sbjct: 283 GQLIERRGQLIGRP-GTHWHEFRRKLADDWLDNGGDRGALMVHAGWTSHEMVERY 336


>gi|242241242|ref|YP_002989423.1| integrase family protein [Dickeya dadantii Ech703]
 gi|242133299|gb|ACS87601.1| integrase family protein [Dickeya dadantii Ech703]
          Length = 327

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 100/257 (38%), Gaps = 36/257 (14%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR---SLSGIKSFLKYLKKRKITTESNI 113
           ++    I +++   I  F ++R    I   ++ R    LSG+  F   +K    T E+ +
Sbjct: 93  QMDDPEICRINKRSILEFRTRRLYDGISSSTVNRDIYRLSGM--FSALIKLEIYTGENPL 150

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
             +  L +       L E +   L+D +           +     +  L    G R  EA
Sbjct: 151 KELPPLPEKQPTVTFLTESEIARLLDTM-----------EGDQYRLAVLCLSTGARWGEA 199

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
            +L  + +M ++ T   + K  K R +P+   V + I                  LF   
Sbjct: 200 STLRAEQVMHNRVTFT-ETKNGKNRTIPISEEVTRII-----------KTRETGKLF--- 244

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
               ++   F   I+       +P    +H LRH+FA+H + NGG+L ++Q ILGH  + 
Sbjct: 245 ---KVDYSAFCEQIK--AVKPDIPKGQASHILRHTFASHFVMNGGNLVALQQILGHASIQ 299

Query: 294 TTQIYTNVNSKNGGDWM 310
            T  Y ++      + +
Sbjct: 300 QTMTYAHLAPDYLQNAI 316


>gi|189462460|ref|ZP_03011245.1| hypothetical protein BACCOP_03148 [Bacteroides coprocola DSM 17136]
 gi|189430621|gb|EDU99605.1| hypothetical protein BACCOP_03148 [Bacteroides coprocola DSM 17136]
          Length = 413

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 54/286 (18%), Positives = 108/286 (37%), Gaps = 27/286 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSLKR 90
           +  TL  Y+   R+   F+      +I+   +R++ +  +  F    RT  +  + +  +
Sbjct: 130 APATLVKYDRTYRRLEEFMKVKY--RISDIALREIDHKFVTDFEFYLRTVSRCNENTTGK 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
            +   +  +   K     T     N   ++K  +     L E++    ++ +L       
Sbjct: 188 FMQIFRKIVLIAKNNGWITVDPFANYHIHMKAVDR--GYLTEEE----LERILKKDFQSQ 241

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSV 206
           +    R+  I       GL   +  +L  +NI    D    L++  +     +   L  +
Sbjct: 242 RLEQVRDIFIFSCF--TGLAYIDVYNLKKENICTSFDGSKWLKLHRQKTATPVNLPLLKI 299

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
             AILE Y           +  L        L+      Y++++    G+  + T H  R
Sbjct: 300 PLAILEKY-----------EGKLKNNRVLPVLSNQKANSYLKEIADLCGIKKNITFHLAR 348

Query: 267 HSF-ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           H+F  T  LS G  + ++  +LGH  + TTQIY  + ++   + M 
Sbjct: 349 HTFATTTTLSKGVPIETVSKLLGHTNIKTTQIYARITNEKIREDMK 394


>gi|296164066|ref|ZP_06846689.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295900614|gb|EFG79997.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 751

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 60/311 (19%), Positives = 113/311 (36%), Gaps = 35/311 (11%)

Query: 19  QNWLQNL--EIER-----GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           Q WL++L     R     G S    Q+Y  D +       F     + I ++  ++   +
Sbjct: 315 QPWLRDLAKRFARWRLSIGRSPN--QTY-IDVQAVTRLAGFLASPPVDITSLAGINRAVL 371

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM----RNLKKSNSLPR 127
             +++   T      S  R +S + +FL  +++ +   +             K +  LPR
Sbjct: 372 ERYLADLSTDPRALHSRSRDISSLGAFLDAIRRHEWDHDLPASAAFYPDDFPKPAKRLPR 431

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DD 184
            L E      +   +   ++   W +  +  +  +L  CGLR+ +A  +    ++   D 
Sbjct: 432 GLAEH-----IMAQVEQPANLDGWNNPESRLLTIILMRCGLRVGDATKIAFDCVIRGGDG 486

Query: 185 QSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-----L 238
              LR   GK  +  +VP+   V +AI E           N    LF   +  P     L
Sbjct: 487 APYLRYTNGKMKREALVPIDEEVEQAIAE-QQQRILRRWTNGSPWLFAAPKMNPDGRRPL 545

Query: 239 NPGVFQRYIRQLRRYLGL------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
               ++  +R       +      P+  T H  RH+F T L++       ++ +L H   
Sbjct: 546 TTPSYRGQLRDWLARCEIRDEHGRPVHLTPHQWRHTFGTRLINRDVPQEVVRVLLDHSSG 605

Query: 293 STTQIYTNVNS 303
             T  Y  ++ 
Sbjct: 606 EMTAHYARLHD 616


>gi|325860247|ref|ZP_08173372.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325482334|gb|EGC85342.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 407

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 58/314 (18%), Positives = 126/314 (40%), Gaps = 30/314 (9%)

Query: 9   IVSFELLKERQ-NWLQNLE-IERGLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQ 65
           ++ + L K+R  N+L   +      +K  L+  +    +F  FL   Y   +  I+    
Sbjct: 110 MLGYRLKKDRNVNFLDYYQAYIDSYTKKDLRMIKIALNRFKDFLKEQYPVYEFGIKP-DL 168

Query: 66  LSYTEIRAFISKRRTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           ++   +  F+   +++ +G   +S+ +     K  ++Y    ++  +     +       
Sbjct: 169 ITKDMMEQFVEYLQSRSVGEGAKSIYQRF---KKVVRYAIDHEVMLKDPCKGVVCKVDEQ 225

Query: 124 SLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            L +  L+  +  +L+     + +   +       A +  LY CGLR  +   LT +N+ 
Sbjct: 226 ILRKDVLSMDEIQSLIQCHYDNENPNVR------RAFILCLY-CGLRFCDVKDLTYKNVD 278

Query: 183 DDQSTLRI--QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLN 239
                L+              ++  +   +L      P DLN +I  LP +         
Sbjct: 279 YTNRLLKFEQNKTKGHSAHSGVIIPLNDGLLSLIGEAPEDLNSSIFNLPSYESCS----- 333

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                + +++  +  G+    + H  RHSFA ++L+NG +++++ S+LGH  L  T+ YT
Sbjct: 334 -----KSVKRWIKRAGINKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYT 388

Query: 300 NVNSKNGGDWMMEI 313
               K   + +  +
Sbjct: 389 RAVDKLKSEAINSL 402


>gi|317504561|ref|ZP_07962535.1| integrase [Prevotella salivae DSM 15606]
 gi|315664332|gb|EFV04025.1| integrase [Prevotella salivae DSM 15606]
          Length = 407

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 60/321 (18%), Positives = 128/321 (39%), Gaps = 44/321 (13%)

Query: 9   IVSFELLKERQ-NWLQNLEIERGLSKLTLQSY-ECDTR-------QFLIFLAF-YTEEKI 58
           ++ + L K+R  N+L   +         + SY + D R       +F  FL   Y   + 
Sbjct: 110 MLGYRLKKDRNVNFLDYYQAY-------IDSYTKKDLRMVKIALNRFKDFLKEQYPLYEF 162

Query: 59  TIQTIRQLSYTEIRAFISKRRTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           +I+    ++   +  F+   +++ +G   +S+ +     K  ++Y    ++  +     +
Sbjct: 163 SIKP-DLITKDMMEHFVEYLQSRSVGEGAKSIYQRF---KKVVRYAIDHEVMQKDPCKGV 218

Query: 117 RNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
                   L +  L+  +   L+     + +   +       A +  LY CGLR  +   
Sbjct: 219 VCKVDDQVLRKDVLSMDEIQALIQCHYENENPNVR------RAFILCLY-CGLRFCDVKD 271

Query: 176 LTPQNIMDDQSTLRI--QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRG 232
           LT +N+      L+              ++  + + +L      P DL+ +I  LP +  
Sbjct: 272 LTYKNVDYTNHLLKFEQNKTKGHSAHSGVIIPLNEGLLSLIGEAPEDLSSSIFNLPSYES 331

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                       + +++  +  G+    + H  RHSFA ++L+NG +++++ S+LGH  L
Sbjct: 332 CS----------KSVKRWVKRAGINKHISWHCARHSFAVNILNNGANIKTVASLLGHSGL 381

Query: 293 STTQIYTNVNSKNGGDWMMEI 313
             T+ YT    K   D +  +
Sbjct: 382 KHTEKYTRAVDKLKEDAINSL 402


>gi|237717596|ref|ZP_04548077.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229453100|gb|EEO58891.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 406

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 58/288 (20%), Positives = 117/288 (40%), Gaps = 26/288 (9%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSLKRSL 92
            T+Q YE  TR    F+    E +++   +  L    I  F +  +  +     S    L
Sbjct: 132 KTVQRYETTTRYLEEFIK--KEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSAITRL 189

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +K  ++   +     +      R  K   + P  L   +       ++L      K +
Sbjct: 190 KNLKKIIRIALENDWIKKDPFAYYR-FKLEETDPEFLTMDEIK-----IILAKEFTIKRV 243

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQG---KGDKIRIVPLLPSVRK 208
           +      ++ ++  GL  S+   L+P++++ D++  L I+    K   +  +P+LP    
Sbjct: 244 EQVRDVFIFCVF-TGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAAS 302

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            + +Y ++      L   LP+        L+      Y++++    GL  +   H+ RHS
Sbjct: 303 ILEKYKNVAECTGKL---LPV--------LSNQRMNSYLKEIADVCGLQKNLCTHSARHS 351

Query: 269 FATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +AT   L+NG  + ++  +LGH   S T+ Y  V  +N    M ++ +
Sbjct: 352 YATSVCLANGVSMENVAKMLGHADTSVTKHYARVLDQNILKDMQKVNN 399


>gi|166033606|ref|ZP_02236435.1| hypothetical protein DORFOR_03332 [Dorea formicigenerans ATCC
           27755]
 gi|319936262|ref|ZP_08010680.1| integrase [Coprobacillus sp. 29_1]
 gi|325262570|ref|ZP_08129307.1| transposase [Clostridium sp. D5]
 gi|166026791|gb|EDR45548.1| hypothetical protein DORFOR_03332 [Dorea formicigenerans ATCC
           27755]
 gi|319808638|gb|EFW05182.1| integrase [Coprobacillus sp. 29_1]
 gi|324032402|gb|EGB93680.1| transposase [Clostridium sp. D5]
          Length = 397

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 57/298 (19%), Positives = 105/298 (35%), Gaps = 34/298 (11%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           +Q    +    E+K+  ++I  +  ++ + +  + + +     ++      +K+      
Sbjct: 104 KQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMKDKGFSYNTINNHKRSLKASFYIAI 163

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           +     ++      + K S  L     EK ALT      L +  +T  +  ++   + +L
Sbjct: 164 QDDCVRKNPF----DFKLSEVLENDTKEKVALTEEQEQALLSFIKTDNVYHKHYDDVLIL 219

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVR 207
              GLRISE   LT  +I      + I                      IR VPL     
Sbjct: 220 LKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGYYIETPKTKSGIRQVPLSRETI 279

Query: 208 KAILEYYDLCPFDLNL---NIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGL 256
           +A        P             LF   +GKP        L   + ++Y +  +     
Sbjct: 280 QAFQRVMKKRPKAEPFVIDGQSNFLFVNHKGKPKVAIDYNALFVRMVKKYNKHHKD--NP 337

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
               T HTLRH+F T L S   + + +Q I+GH  +S T   Y + +       +  +
Sbjct: 338 LPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQRL 395


>gi|152973358|ref|YP_001337138.1| putative prophage gp Int for integrase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|150958207|gb|ABR80237.1| putative prophage gp Int for integrase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
          Length = 335

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 64/321 (19%), Positives = 114/321 (35%), Gaps = 46/321 (14%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDT--------RQFLIFLAFYTEEKIT 59
           E ++FE    +  W +  E  R L +L    Y            RQ  +  AF    +  
Sbjct: 34  EALAFEQYTVQNPWQEEKEDRRTLKELVDSWYSAHGITLKDGLKRQLAMHHAFECMGEPL 93

Query: 60  IQTIRQLSYTEIRA------FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESN 112
            +      ++  R       +    R +++  R+L   L+  ++    L +      E+ 
Sbjct: 94  ARDFDAQMFSRYREKRLKGEYARSNRVKEVSPRTLNLELAYFRAVFNELNRLGEWKGENP 153

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           + NMR  +        L + Q   L+     H   + +        ++ +    G R SE
Sbjct: 154 LKNMRPFRTEEMEMAWLTQDQISQLLGECKRHEHPDLE-------TVVRICLATGARWSE 206

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
           A SL    +   + T     KG K R VP+   + + + +           + +  LF  
Sbjct: 207 AESLRKSQLAKYKITYT-NTKGRKNRTVPISKELYETLPD-----------DKKGRLFSD 254

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             G            R      G+  P     H LRH+FA+H + NGG++  +Q +LGH 
Sbjct: 255 CYG----------AFRSALERTGIELPPGQLTHVLRHTFASHFMMNGGNILVLQRVLGHT 304

Query: 291 RLSTTQIYTNVNSKNGGDWMM 311
            +  T  Y +    +  D + 
Sbjct: 305 DIKMTMRYAHFAPDHLEDVLR 325


>gi|281424486|ref|ZP_06255399.1| integrase [Prevotella oris F0302]
 gi|281401323|gb|EFB32154.1| integrase [Prevotella oris F0302]
          Length = 410

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 65/285 (22%), Positives = 110/285 (38%), Gaps = 22/285 (7%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKR 90
           S  T Q Y    R F  FL      K +   + +L+Y  I  F    RT       +  +
Sbjct: 129 SAATFQKYNVCKRHFTTFLQNKY--KRSDIRLSELTYIIIHDFDIFLRTVVGQNPNTATK 186

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           ++   K+     +K  +      LN R   +  +    L +++ L + +  L     E  
Sbjct: 187 TMKTFKTITILGRKMGVIHHDPFLNHRFHLEPVNR-GFLTDEEILKIANKDLGIQRLELV 245

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRK 208
                   +       GL   +  +LTP+NI+  DD+  +  + +   +    LL  + K
Sbjct: 246 ------RDLFVFSCFTGLAYIDVANLTPENIVTLDDKQWIMTKRQKTSVATNVLLLDIPK 299

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            I+E Y    +         LF       L       Y++++    G+    T H  RH+
Sbjct: 300 NIIEKYSGKTYR-----DGKLFP-----MLTNQRTNSYLKEIADICGIKKDLTFHMARHT 349

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           FAT  LS G  + S+  +LGH  + TTQIY  + +K     M ++
Sbjct: 350 FATMSLSKGVSMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQL 394


>gi|91218504|ref|ZP_01255443.1| probable integrase [Psychroflexus torquis ATCC 700755]
 gi|91183335|gb|EAS69739.1| probable integrase [Psychroflexus torquis ATCC 700755]
          Length = 137

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 7/132 (5%)

Query: 173 ALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            ++L  ++I   +  +RI+  KG+K R+  L  +    +  YY       N   +  LF 
Sbjct: 1   MINLKLEDIDSKRMLVRIKKAKGNKDRLTLLSQNALLDLRCYYR------NWKPKAYLFE 54

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           G +    +       +++      + +  T H LRHSFATHLL  G DLR IQ +LGH  
Sbjct: 55  GQKVGKYSGQAVVNVVKKAAFKAKIRIPVTPHMLRHSFATHLLEAGVDLRQIQVLLGHQS 114

Query: 292 LSTTQIYTNVNS 303
             TT+IYT+V +
Sbjct: 115 TKTTEIYTHVAT 126


>gi|212709287|ref|ZP_03317415.1| hypothetical protein PROVALCAL_00322 [Providencia alcalifaciens DSM
           30120]
 gi|212688199|gb|EEB47727.1| hypothetical protein PROVALCAL_00322 [Providencia alcalifaciens DSM
           30120]
          Length = 343

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 56/316 (17%), Positives = 112/316 (35%), Gaps = 44/316 (13%)

Query: 8   EIVSFELL----KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-----EKI 58
           E ++FE       +   W   L+ +R LS+L    ++   +          E     + +
Sbjct: 50  EAIAFEKYLIANHQSDEWKPKLKDKRRLSELAEIWWKYHGKNNEHAAHRQREVNRVIKLM 109

Query: 59  TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNILNMR 117
                  +  + +  +   R    +   ++ R L  ++    +L    +  +++ I   +
Sbjct: 110 GDPAASSIDKSTLTYYCHDRLASGVKASTINRELVQLRGMFTFLISSGLFLSDNPIAGHK 169

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
            LK+       L   +   L+             +   N  +       G R SEA  + 
Sbjct: 170 KLKEDIPEMSYLTTFEVKKLLAE-----------LSGDNYRLAIFGLSTGTRWSEAKRVK 218

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
            ++I+  + TL  + K  K R +PL  +V   + +                     R   
Sbjct: 219 CEHIVHKRVTL-FKTKNGKKRTIPLSQNVIDIVTK--------------------DRTAF 257

Query: 238 LNPGVFQRYIRQLRRYL--GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           L P    +  R   R +   +P     H +RH+F TH +  GG++ ++Q ILGH ++  T
Sbjct: 258 LFPNASYKDFRNALRKVKPDIPKGQATHIMRHTFGTHFMFRGGNIVTLQKILGHSKIEQT 317

Query: 296 QIYTNVNSKNGGDWMM 311
             Y +   +   D + 
Sbjct: 318 MTYAHFAPEYLDDAIR 333


>gi|158320318|ref|YP_001512825.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
 gi|158140517|gb|ABW18829.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
          Length = 380

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 52/300 (17%), Positives = 112/300 (37%), Gaps = 35/300 (11%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
            ++      + +  I    + ++    +   +   + + +   +L+     + S      
Sbjct: 84  NRYKEIYNRHLKPYIGHLGLSEVKPIHLDQMLLGEKKKGLSGSTLQNIYGTLNSAFNRAV 143

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           K +I  ++ +  +   K+   +   L  ++   L D         +K+ D   S  L ++
Sbjct: 144 KLQIMYDNPLRFIDRPKRDKFVASTLAVEEIGQLFD-----ALDTSKYNDYIMSLGLKIV 198

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRI--------------QGKGDKIRIVPLLPSVRKA 209
              GLR  E   L  + I  ++  + I                K D+ R + +   + + 
Sbjct: 199 LELGLRRGELAGLEWKYIDFNKQIITIANNLVDTYTEVSLTTPKTDERRDLYVSKGLMQL 258

Query: 210 ILEY------------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           + ++                  + N N+   +     G  ++P  +     +L + +   
Sbjct: 259 LKQHKVLQTKNRMKYRPHYKENEFNGNVCDFVMTWEDGTYVHPNYYTVKFNKLLKKVNFD 318

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN---SKNGGDWMMEI 313
            +   H LRH+ AT LL  G D + IQ+ LGH  ++TT  IY++VN    K   + ++EI
Sbjct: 319 RNIRFHDLRHTNATLLLQQGIDFKVIQTRLGHSDINTTLNIYSHVNVEMQKKATEKLIEI 378


>gi|330502138|ref|YP_004379007.1| phage integrase family protein [Pseudomonas mendocina NK-01]
 gi|328916424|gb|AEB57255.1| phage integrase family protein [Pseudomonas mendocina NK-01]
          Length = 342

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALT 136
           R    I  ++L   L  I++    L+        + +  M+  +        L ++Q   
Sbjct: 112 RAEAGITPKTLNNELGYIRAVFNELRGLGQIDYANPLELMKLYRIEERELSWLTQEQIAD 171

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+      TS      +     I+ L    G R SEA  LTP  + +   T   + K  K
Sbjct: 172 LL------TSIREGCDNPHVEPIVLLCLATGARWSEAECLTPSRLRNGAVTYS-KTKSSK 224

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +R VP+ P +   I +++         + Q         + L+                L
Sbjct: 225 VRTVPIQPELEAFIRDHW-------KRHGQFTGAITSFRRALSRSGIV-----------L 266

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           P    +H LRH+FA+H +  GG++ ++Q ILGH  L+ T  Y ++  ++  + + 
Sbjct: 267 PKGQASHALRHTFASHFMQKGGNILTLQKILGHSSLAMTMRYAHLAPEHLAEAVK 321


>gi|327313820|ref|YP_004329257.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|326944777|gb|AEA20662.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 428

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 58/289 (20%), Positives = 112/289 (38%), Gaps = 28/289 (9%)

Query: 35  TLQSYEC-DT--RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKR 90
           T  +Y   D   R F  FL        T   I +L+   I  F    +T       +  +
Sbjct: 129 TKANYRKFDICKRHFAKFLEEKYAR--TDLNIIELTPIVIHDFDVYLKTVVGQCFNTAIK 186

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           +L   K+ + + +K  +      LN+   K        L +++  T++           +
Sbjct: 187 TLKTFKTVIIFGRKAGVFNHDPFLNIH-FKTKRVDRGFLTDEEVDTIMHKEFA----TQR 241

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRIQGKGDKIRIVPLLPSVR 207
            ++ R+  +       GL   +  +LTP N   +   Q  +  + K D +  + LL   +
Sbjct: 242 LVNVRDIFLFSCF--TGLAYVDVANLTPDNIITMDGKQWIVTARQKTDTLSHILLLDIPK 299

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             I +Y                  G     L+      Y++++    G+  + T H  RH
Sbjct: 300 IIIKKYEGKAKN------------GRLIPILSNQRMNSYLKEIADVCGINKNLTFHMARH 347

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +FAT +L+ G  + S+  +LGH  ++TTQ+Y  + +K   + M+ +  +
Sbjct: 348 TFATMMLTKGVPVESVSKMLGHTSITTTQLYARITNKKIENDMLAVSKK 396


>gi|313105646|ref|ZP_07791910.1| putative bacteriophage integrase [Pseudomonas aeruginosa 39016]
 gi|310878412|gb|EFQ37006.1| putative bacteriophage integrase [Pseudomonas aeruginosa 39016]
          Length = 328

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 58/289 (20%), Positives = 104/289 (35%), Gaps = 31/289 (10%)

Query: 29  RGLSKLTLQSY---ECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEIRAFISKRRTQKI 83
           R LS+L    Y       R     L+   +    +       L  +   +   KR  + I
Sbjct: 58  RRLSELVQLWYDLHAHSLRDAPRRLSKPLQLAARLGDPIATALDASSYASLRRKRLEEGI 117

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
             ++L   L  I++    LK       ++ +  ++ LK        L  +Q   L+D++ 
Sbjct: 118 SGKTLNNELGYIRAVFNELKDLGQIDYDNPLAGVKLLKLQEGELSWLTTEQIGELLDSI- 176

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
                  +  +     +  L    G R SEA  L P   +          K  K+R VP+
Sbjct: 177 -----RNRCDNPHTELVTLLCLATGARWSEAEKL-PAQRLQGNVVTYAGTKSGKVRHVPI 230

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
              +   +  ++ +       +           + L     Q           LP    +
Sbjct: 231 PAELADRVRAHWPM-------HGPFTSCITSFRRALERTTIQ-----------LPQGQAS 272

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           H LRH+FA+H + NGG++ ++Q ILGH  L+ T  Y + +  +  D + 
Sbjct: 273 HALRHTFASHFMMNGGNILTLQKILGHSTLTMTMRYAHPSPDHLQDAVK 321


>gi|296164168|ref|ZP_06846774.1| tyrosine recombinase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295900480|gb|EFG79880.1| tyrosine recombinase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 350

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 50/313 (15%), Positives = 102/313 (32%), Gaps = 36/313 (11%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
              RG ++ T+ +   D       LA         + + +++  ++   + +  +     
Sbjct: 37  WTARGFAESTIAN---DVGVLERMLAALG------RPVWEVTAADVDRVVGELASSGRAV 87

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL----------------KKSNSLPRAL 129
            + +  L   + F ++L+ RK         +R                    + + P   
Sbjct: 88  STRRNYLQVFRGFHRFLEVRKAAEIEAAFGVRLACPLDEFNAARHVSDDSPTAQAPPAPE 147

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--- 186
                   +   +   +       AR+ A+   LY  GLR  E + L   ++   +    
Sbjct: 148 RVAAFFEFLKGRI--ATARKYAPAARDYALFRTLYHAGLRSEEVVMLDRADVHFPRGPFG 205

Query: 187 TLRIQ----GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
            L ++     KG   R   +       ++  + L            L     G  +    
Sbjct: 206 KLHVRFGKGAKGSGPRPRWVPMLDGLDLVLRWYLDDVRGRFPDSPVLLCDESGGRMAAAT 265

Query: 243 FQRYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            +  +R L    G P +   + H +R + ATH    G DL +IQ +LGH+ +++T  Y  
Sbjct: 266 IRNRLRHLMSVEGRPDADWFSPHGMRRACATHNYERGVDLVAIQQLLGHWTVASTMRYVR 325

Query: 301 VNSKNGGDWMMEI 313
            +     D     
Sbjct: 326 PSETFIEDAYQRA 338


>gi|218130592|ref|ZP_03459396.1| hypothetical protein BACEGG_02181 [Bacteroides eggerthii DSM 20697]
 gi|217986936|gb|EEC53267.1| hypothetical protein BACEGG_02181 [Bacteroides eggerthii DSM 20697]
          Length = 403

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 50/272 (18%), Positives = 104/272 (38%), Gaps = 25/272 (9%)

Query: 53  YTEEKITIQTIRQLSYTEIRA-----FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI 107
           Y  E +    +R +++ +I       +    +++  G   +   L+ +   +     R++
Sbjct: 137 YLHEYLLSLGMRDITFEDITEDFGWGYKLYLKSKDCGAGHINHCLTWLNRLIYIAVDREV 196

Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
              + + ++   KK +S  R ++  +   +++          +  +    A ++  +  G
Sbjct: 197 IRFNPLADVTYEKKPDSKLRHISRAELQRIMEQ-----PMPERLQELTRRAFIFSAF-TG 250

Query: 168 LRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
           L   +   L P +I    D +  +RI  K   +     L  V + IL  Y+        +
Sbjct: 251 LSYVDVKRLYPSHIGTTADGRRFIRINRKKTDVESFIPLHPVAEQILSLYNT------TD 304

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
              P+F       L        I ++    G+  + + H  RHSF T  LS G  + SI 
Sbjct: 305 DGRPVFPLPNRNRL-----WYCIHEIGILAGVKENLSYHASRHSFGTLTLSAGVPIESIS 359

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            ++GH  + TTQ Y  V      + M  + ++
Sbjct: 360 KMIGHTNIRTTQGYAKVTDDKISEDMDRLMER 391


>gi|193068261|ref|ZP_03049225.1| integrase [Escherichia coli E110019]
 gi|192958540|gb|EDV88979.1| integrase [Escherichia coli E110019]
          Length = 334

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 58/275 (21%), Positives = 104/275 (37%), Gaps = 40/275 (14%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
           E D +Q    +     +   +     L   +I A+ S++    +   S  R ++ +    
Sbjct: 80  EEDRKQLCNIINELGADMQAV----DLDKLKIIAWRSQKIAAGLKPSSANRYMNRLSGMF 135

Query: 100 KYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
             LK+  +   E  +  +  L  S      L++K+   L+D            +D     
Sbjct: 136 TVLKRIGLWDAEHPVRGISILYVSPREMAFLSQKEVALLLDT-----------LDGDYWR 184

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +  L    G R SEA  L  + I+ ++ T  ++ K  + R VP+  +V +AI        
Sbjct: 185 VALLCLSTGARWSEACKLRGEQIVHNRVTF-LETKNGRKRTVPISQAVCEAIKTRETGGL 243

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL--GLPLSTTAHTLRHSFATHLLSN 276
           F++                       R      + +   LP    AH LRH+FA+H + N
Sbjct: 244 FEVK---------------------YREFCLALKRVKPDLPKGQAAHVLRHTFASHFVMN 282

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           GG++ ++Q ILGH  +  T  Y +       D + 
Sbjct: 283 GGNIIALQKILGHATIQQTMAYAHFAPDYLQDAVA 317


>gi|255034748|ref|YP_003085369.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254947504|gb|ACT92204.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 412

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 61/285 (21%), Positives = 110/285 (38%), Gaps = 24/285 (8%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSLKRSLS 93
           T + YE   R    FL        T   I ++ +  I  +    R+ +K+G+ ++ + + 
Sbjct: 134 TFKRYEVLRRHTESFLKANF--NTTDFDISRIDFAFIADYEFHLRSVRKMGNNAVVKHMK 191

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
             +  +         +    LN +   K   + +A+  K+ L L+      +   T+  D
Sbjct: 192 MFRKIVNICLGNGWMSLDPYLNFKG--KFKKVDKAILTKEELCLLSEKEFASDRLTQVRD 249

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNI----MDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
                        GL  S+  SL   +I      DQ     + K +    +PLLP     
Sbjct: 250 T-----FLFCCYTGLAYSDIQSLERSDIARGIDGDQWIFTHRTKTNVKSHIPLLPEALAI 304

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           I  Y D    + +  + LP+    +           Y++++    G+    T+H  RH+F
Sbjct: 305 IARYNDDPACE-SRGLVLPVPSNQKM--------NDYLKEIAVVCGIDKILTSHVARHTF 355

Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           AT + L NG  + S+  +LGH  + TTQIY  +      + M  +
Sbjct: 356 ATTITLQNGVPIESVSKMLGHTNIRTTQIYAKILDLKVSEDMQAL 400


>gi|152984624|ref|YP_001346111.1| integrase [Pseudomonas aeruginosa PA7]
 gi|150959782|gb|ABR81807.1| integrase [Pseudomonas aeruginosa PA7]
          Length = 394

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 59/293 (20%), Positives = 108/293 (36%), Gaps = 54/293 (18%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-----IGDRSLKRS 91
           ++Y  D   F  + A   E +             +R+ + + R +      +G  +L   
Sbjct: 98  KAYRFDAAMFAQYRAERAEGQ------------HVRSSVGRGRRKGAAGKGVGANTLNHE 145

Query: 92  LSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           L+ + + F +  +  +   ++ + ++R LK  ++    L   Q   L+D +    S    
Sbjct: 146 LAYLSAVFSELSRLGEWRGDNPLASVRPLKFDDAEMVCLELDQVDALLDELNTRDSAAG- 204

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
                   I  +    G R  EA SL  + +         + K  K R VP+   + + +
Sbjct: 205 -------LIAEVCLSTGARWGEAESLQVRQVH-GGMVHYSRTKSSKNRSVPISKDLERRL 256

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           L                               F+R +  +   L LP     H LRH+FA
Sbjct: 257 LAALPFRSG--------------------YNTFRRAVEAVG--LDLPEGQLTHVLRHTFA 294

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
           +H + NGGD+ ++Q +LGH  L  T  Y + +  +    M E+    HP   +
Sbjct: 295 SHYMRNGGDIITLQRVLGHASLQMTMRYAHFSPGH----MAEVV-HLHPLAGR 342


>gi|147676548|ref|YP_001210763.1| hypothetical protein PTH_0213 [Pelotomaculum thermopropionicum SI]
 gi|147677767|ref|YP_001211982.1| hypothetical protein PTH_1432 [Pelotomaculum thermopropionicum SI]
 gi|147678786|ref|YP_001213001.1| integrase [Pelotomaculum thermopropionicum SI]
 gi|146272645|dbj|BAF58394.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
 gi|146273864|dbj|BAF59613.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
 gi|146274883|dbj|BAF60632.1| hypothetical integrase [Pelotomaculum thermopropionicum SI]
          Length = 361

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 60/354 (16%), Positives = 127/354 (35%), Gaps = 78/354 (22%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR---------- 79
           G ++ +L++Y    + F  FL             R+++  E+ AF+   +          
Sbjct: 24  GAARNSLRAYCQHLKLFFEFLEQEE------LDYRKINIDEMAAFLRWLQNPYGNLKVIP 77

Query: 80  ----TQKIGDRSLKRSLSGIKSFLKY-LKKRKIT-------------------------- 108
               T   G  ++   +S + +F  Y ++    +                          
Sbjct: 78  VTPVTSPRGPATVNTVISTVLNFYDYLMRHEDYSVQLSERLKKTIPGSRRGFKDFLYHIN 137

Query: 109 -TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
             +     +  +K   S P+ + ++Q   L+D             + R+  ++ LL+   
Sbjct: 138 KDKEYPAKILKVKVRRSRPKTIPKEQVGKLIDAC----------SNLRDKFLIQLLWESS 187

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKG-----------DKIRIVPLLPSVRKAILEYYDL 216
           +RI EAL+L  ++   D   + I+ +G              R V + P +     +Y   
Sbjct: 188 MRIGEALALWLEDFEPDGQKIHIRDRGELPNLAEIKTICSPRTVDVSPDLINLFFDYVAE 247

Query: 217 CPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
              D     +I + L    + +P+         R+L+   G+    + H LRHS  T L 
Sbjct: 248 FHTDEVDTNHIFIKLSGKNQYQPMEYQDVASLFRRLKAKTGID--VSPHILRHSSLTELR 305

Query: 275 SNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
             G     ++   GH  + TT QIY + + ++    + + +++    +  K ++
Sbjct: 306 RAGWKPEHLRKRAGHAHVQTTMQIYLHPSDED----LRKDWEKAEEKMRLKRQQ 355


>gi|28379726|ref|NP_786618.1| prophage Lp4 protein 1, integrase [Lactobacillus plantarum WCFS1]
 gi|28272567|emb|CAD65493.1| prophage Lp4 protein 1, integrase [Lactobacillus plantarum WCFS1]
          Length = 388

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 102/284 (35%), Gaps = 29/284 (10%)

Query: 48  IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI 107
                +   ++  Q +++++  + ++ + K   Q     + +R  +   S   +  + ++
Sbjct: 99  DIFRLHILPELGSQRVKRITVAQCQSIVHKWLNQGFK--TYRRFRTYAISVFDFGVRMEL 156

Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           TT + +      K+  + P+A +            L  +  +K  + +      LL   G
Sbjct: 157 TTRNPMAKTSIPKQ-KTKPQAPHVDFYEKSELLHFLDCA--SKHENPQAFMFFRLLAFTG 213

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGK----------------GDKIRIVPLLPSVRKAIL 211
           LR  EAL+L   +I  + + L +                       R + L P   + + 
Sbjct: 214 LRRGEALALQWSDINFETNELTVNKTQAVGKRWRTIIQTPKTNTSYRTIVLDPDTAQWLH 273

Query: 212 EYYD---LCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           ++        F+L  N   P   +F   + K ++P     +   + +  GL      H  
Sbjct: 274 KWKMTQARQCFELGFNANDPSQLVFTNQQNKLMSPSTVNYFNWSICKKYGL-RHIKIHAF 332

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
           RH+F T        +  +   LGH  L  T QIY +V  K   +
Sbjct: 333 RHTFCTLAFEAHAGINEVSKTLGHADLKITEQIYLHVTKKQKNE 376


>gi|304383186|ref|ZP_07365659.1| probable integrase [Prevotella marshii DSM 16973]
 gi|304335657|gb|EFM01914.1| probable integrase [Prevotella marshii DSM 16973]
          Length = 407

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 56/312 (17%), Positives = 120/312 (38%), Gaps = 26/312 (8%)

Query: 9   IVSFELLKERQ-NWLQNLE-IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           ++ + L K+R  N+L   +      +K  L+  +    +F  FL  Y            +
Sbjct: 110 MLGYRLKKDRNINFLDYYQAYIDSYTKKDLRMIKIALNRFKDFLKEYYPLYEFSIKPDLI 169

Query: 67  SYTEIRAFISKRRTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           +   +  F+   +++ +G   +S+ +     K  ++Y    ++  +     +        
Sbjct: 170 TKEMMERFVEYLQSRSVGEGAKSIYQRF---KKVVRYAIDHEVMLKDPCKGVVCKVGEQI 226

Query: 125 LPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           L +  L+  +  +L+     + +   +       A +  LY CGLR  +   LT +NI  
Sbjct: 227 LRKDVLSMDEIQSLIQCHYDNENPNVR------RAFILCLY-CGLRFCDVKDLTYKNIDY 279

Query: 184 DQSTLRI--QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
               L+              ++  +   +L      P DL+          I   P    
Sbjct: 280 TNHLLKFEQNKTKGHSANSGVVIPLNDGLLSLIGEAPEDLDT--------SIFNLP-TYE 330

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              + +++  +  G+    + H  RHSFA ++L+NG +++++ S+LGH  L  T+ YT  
Sbjct: 331 SCCKSVKRWVKRAGINKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRA 390

Query: 302 NSKNGGDWMMEI 313
             K   + +  +
Sbjct: 391 VDKLKSEAINSL 402


>gi|322433741|ref|YP_004215953.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321161468|gb|ADW67173.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 395

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 58/325 (17%), Positives = 106/325 (32%), Gaps = 36/325 (11%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
            L   + +L     +   ++ T+++       F++FL      +  I  +  ++   +  
Sbjct: 74  FLSVIKEYLDGFCRQHYKNQGTIRA---AVCPFILFL-----NERGITDLENVTPKTVTE 125

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNE 131
           FIS               +S +  F K+  +          I      K++  LPR    
Sbjct: 126 FISWATEVDYKSSPQ--HISVLNGFFKWALRHGHRKSGSPVIAKFHGKKRAQHLPRPYTA 183

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLR 189
           ++   +     L        +     AI+ +    GLR+ E   L  +++     +  +R
Sbjct: 184 EEMTII---WALAEERGNSRL----RAIIAIGEESGLRLGEICRLREEDVDLVGHRLFVR 236

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           +  K D  R  P      + ILE+        +      LF    G P       R + +
Sbjct: 237 LPNKTDCERWAPFSDKTARYILEWRSERD---DKCGHDFLFHNSLGDPPRADTMHRELCR 293

Query: 250 LRRYLGLPLSTTA--------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               +                H LRH+ A+ L S G    +I +  G    S+   YT V
Sbjct: 294 TFCKIHGGTQVNPSGLDEWSTHRLRHTMASRLASGGASFPTIMAAGGWKSPSSMMHYTKV 353

Query: 302 NSKNGGDWMMEIYDQTHPSITQKDK 326
           ++          YDQ      +K K
Sbjct: 354 DADQARHG----YDQAMRRAEEKSK 374


>gi|325977283|ref|YP_004286999.1| site-specific recombinase, phage integrase family [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325177211|emb|CBZ47255.1| site-specific recombinase, phage integrase family [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 378

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 44/297 (14%), Positives = 102/297 (34%), Gaps = 48/297 (16%)

Query: 34  LTLQS-YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF-------ISKRRTQKIGD 85
            T ++ Y    + +             +  + +L Y +   F       ISK   + +  
Sbjct: 85  NTQENNYNRHIKHYFE----------KVTDVSKLQYDDFYDFREHLIGTISKNTKKPLSP 134

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            ++ + +  +K  +    ++     + +  ++ L             +    ++      
Sbjct: 135 NTINKIMILLKKIMDIGVRKGFYPSNPVTLIKKLPIDKPKLNYWTVSEFKDFLELF---- 190

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--------------- 190
                  +     +  +LY  G+R+ E L+L   +I   ++T+ +               
Sbjct: 191 ----TPEEYHYQLLFKVLYFTGMRLGEVLALNWNDIDFSRNTIAVSKSVYFKKGVSYIST 246

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
                 IR + +   +   +  +       L  F  +    L LF+     P+     ++
Sbjct: 247 PKTKASIRQIVINAKLMNELEVWQHKQYELLRQFSNDDCSDLQLFQNS-PIPITKDSIEK 305

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           + R L +          H LRHS A+ L++ G D   ++  LGH  ++TT   Y+++
Sbjct: 306 HYRGLLKRNPKLKKIRIHDLRHSHASLLINQGEDYLVVKERLGHASITTTIDTYSHL 362


>gi|254498097|ref|ZP_05110854.1| Tn554, transposase B [Legionella drancourtii LLAP12]
 gi|254352663|gb|EET11441.1| Tn554, transposase B [Legionella drancourtii LLAP12]
          Length = 463

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 108/306 (35%), Gaps = 32/306 (10%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L K  + +++     R  S  T + Y         ++        T  T   ++   I  
Sbjct: 52  LNKAAKKFVRLQAATRSYS--TCRGYIRGFNHLNDYIQTLN----TFITPNNVNRVFIVG 105

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT---TESNILNMRNLKKSNSLPRALN 130
           FI     + +   +   +L  I++F +   + +      +  I N    + +   P+ ++
Sbjct: 106 FIQYLAQRGLNPMTRGITLMNIRTFHQVALQEEWLNFPDKPFIFNNDLPRDTTITPKFIS 165

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT---PQNIMDDQST 187
           +         VLL        +       + +L   G R+SE   L     +   D    
Sbjct: 166 QD--------VLLQLKRHLHCLSDWMQRFILVLLETGRRVSEVSFLKFDCLEQDSDGDWL 217

Query: 188 LRIQGKG-DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---LNPGVF 243
           LR+  K   + R++P+ P+  +AI           + +I   LF   R      ++    
Sbjct: 218 LRVHEKKLKRERLIPISPACVEAIKA--QQIDLTDSGHISPLLFPSRRQSKSPTISAPHI 275

Query: 244 QRYIRQLRRYL------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
            R + +L +        G+    ++H  RH+  + +++ G     +Q  LGH     T  
Sbjct: 276 NRALNKLAQEKNIVDANGIIWKFSSHQFRHTVGSQMINAGVPQVMVQKYLGHESPEMTAR 335

Query: 298 YTNVNS 303
           Y +++ 
Sbjct: 336 YAHIHD 341


>gi|332884088|gb|EGK04368.1| hypothetical protein HMPREF9456_01396 [Dysgonomonas mossii DSM
           22836]
          Length = 410

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 106/287 (36%), Gaps = 28/287 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
             SK T Q YE   +    F+   Y    + ++ I  +  T+   ++    T      + 
Sbjct: 128 NKSKATYQKYEVTRKHLTSFIKEKYNRSDVALKEIDFIFITDFEVYL--LTTAGCNPNTT 185

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
            + +   K  +   K          +N +  +KK +     L + +  ++++  +     
Sbjct: 186 AKFMQFFKRIVIIAKNNGWLKSDPFINYKIRIKKVDR--GYLTQNEIESIINKKITI--- 240

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKGDKIRIVPLL 203
             +    R+  I      CGL   +  +L   N      D    +  + K      +PLL
Sbjct: 241 -KRLDQIRDIFIFSCF--CGLAYIDVKNLRKDNIRISFDDKLWLIGKREKTGVSFTIPLL 297

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              ++ + +Y       L+ +  LP+    +           Y++++    G+    + H
Sbjct: 298 DIPQRILDKY----EGALSDDRVLPVPSNQK--------VNAYLKEIGSLCGIDKELSFH 345

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
             RH+FAT  LS G  + S+  +LGH  + TTQIY  +      + M
Sbjct: 346 LARHTFATLTLSKGVSIESVSKMLGHTNIRTTQIYARITDSKISNDM 392


>gi|289704735|ref|ZP_06501158.1| site-specific recombinase, phage integrase family [Micrococcus
           luteus SK58]
 gi|289558545|gb|EFD51813.1| site-specific recombinase, phage integrase family [Micrococcus
           luteus SK58]
          Length = 381

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 45/305 (14%), Positives = 108/305 (35%), Gaps = 51/305 (16%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR---------TQKIGDRSLKRSLS 93
            R     L  +   +     + ++  T+++ +I+            T      ++ R   
Sbjct: 83  LRPVESALRVHVLPRWGSIPVAEVRTTDVQQWITDLSRGRPEATPPTSGRSATTVARCFG 142

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            + + L      +    +    ++  K++      L+ +Q           T        
Sbjct: 143 VLAAILDDAVADRRIVTNPARGVKLPKRTPKPRVYLSHEQVHAFARASKYPT-------- 194

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--------------GKGDKIRI 199
                ++ +L   GLR  EA +L  +++   +  ++++               K  ++R+
Sbjct: 195 -----LVLVLAYTGLRWGEASALRVRHLDMLRRRIKVEENAVDVGGVVHVGTPKTHRVRV 249

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ----RYIRQLRRYLG 255
           VP    +  A+    +    D        +F G  G  ++P         +     R   
Sbjct: 250 VPFPRFLGDALAAQCEGKGRD------ELVFPGPGGGYMSPARVHEGHGSWWGAAVRAAD 303

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNG---GDWMM 311
           +P   T H LRH+ A+  +S G +++++Q +LGH   + T  +Y ++  ++     D + 
Sbjct: 304 VPR-VTPHDLRHTAASFAVSAGANVKAVQRMLGHASAAMTLDVYADLFDEDLNAVADRLD 362

Query: 312 EIYDQ 316
            +  +
Sbjct: 363 AVVAE 367


>gi|119714097|ref|YP_919239.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119716492|ref|YP_923457.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119717196|ref|YP_924161.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119526006|gb|ABL79376.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119537153|gb|ABL81770.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119537857|gb|ABL82474.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 411

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 66/362 (18%), Positives = 131/362 (36%), Gaps = 75/362 (20%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDT----------------------RQFLI 48
           + + ++    +L++    RG S+ +++SY                          R   +
Sbjct: 31  AGDAVRPIAEFLRDFAA-RGNSRGSVRSYAYGLLRWWRWLAAVGVEWDRATQAEVRDLTL 89

Query: 49  FLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKI 107
           +L  + + + + +T+   +   +     KR        R+++ S + + SF ++  ++ +
Sbjct: 90  WLQLHPKPRRSQRTVSAATAGTVNQVTGKRYLDDHYAARTIRHSNAVVSSFYEFWGEQGL 149

Query: 108 ------------------TTESNILNMR-------NLKKSNSLPRALNEKQALTLVDNVL 142
                                + +   R       N K     PRAL ++    L D + 
Sbjct: 150 GPVVNPVARDHRGQGRSNAHHNPMERFRPEGRVRHNPKVPRRQPRALPDQAWANLFDAMG 209

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
            +          R+ A+L L    G R +E L L   ++      +R+  KG   R    
Sbjct: 210 SN----------RDRALLALAISNGARAAEVLGLRGCDVDWGNQQVRVIRKGS--RAEQW 257

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----------PLNPGVFQRYIRQLRR 252
           LP    A +           +    PL+  +R +          PL+    +  +R+   
Sbjct: 258 LPGSNDAFVWLRLYLAEIGGVGPADPLWVTLRRRRDADGKLARIPLSYEALRAVLRRANA 317

Query: 253 YLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
            LG   + + H LRH+ A  +       LR +Q+ILGH  L TT +IY   + ++  + +
Sbjct: 318 KLG--TNWSMHDLRHTCALRMAADEHVSLRDVQTILGHAHLETTAEIYLVEDERHTVERV 375

Query: 311 ME 312
            E
Sbjct: 376 AE 377


>gi|228950418|ref|ZP_04112578.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228809233|gb|EEM55694.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 369

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 55/315 (17%), Positives = 109/315 (34%), Gaps = 39/315 (12%)

Query: 18  RQNWLQNLEIERGLS--KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            +++L +    + +S  + T   Y         FL  +    I +  + +L+   I+   
Sbjct: 65  LEDYLNHWLEIKSMSIERSTFVGYR-------AFLNQHVIPSIGMVALHKLNVMHIQKCY 117

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                + I + S+      +KS L    K+ I + +        KK  +  +   E++  
Sbjct: 118 KTAIDKGIANNSVLLMHRILKSALNLAVKQNIISRNPADFAEIPKKERTSIQTWTEEEVK 177

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
                 LLH+      I         L    G+R+ E L L  Q++  ++ T+ I     
Sbjct: 178 KF----LLHSQESRYHIGY------LLAITTGMRMGEVLGLRWQDVDFEKHTVTINQTSG 227

Query: 196 KI-------------RIVPLLPSVRKAILEYYDLCPFDL-----NLNIQLPLFRGIRGKP 237
                          R +P+     + + ++  L   +             +     G  
Sbjct: 228 HDNKIKKTAKTNSSKRTIPVPKETIECLKKHKVLINQEKLRLGSAYQDFDLINCNEFGMI 287

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
           +    F++   +     G+      H LRH+ AT LL  G + + I   LGH  +S T  
Sbjct: 288 IKKANFRKNFIRAIHNAGV-KEIKFHDLRHTHATILLKQGVNPKIISERLGHTDISMTLS 346

Query: 297 IYTNVNSKNGGDWMM 311
           +Y++V      + + 
Sbjct: 347 VYSHVLPNMQEEAVK 361


>gi|257064282|ref|YP_003143954.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
 gi|256791935|gb|ACV22605.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
          Length = 398

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 63/338 (18%), Positives = 114/338 (33%), Gaps = 54/338 (15%)

Query: 13  ELLKERQNWLQNLEIERGLSKL-----------------------TLQSYECDTRQFLI- 48
           E  ++ + WL  L   RG S                         T ++Y    R+++  
Sbjct: 44  EARQQAREWLSGLLRVRGASASGLVRDLVRAYVASREGAGDIAVSTAKTYRTICRRYVEP 103

Query: 49  FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL---KRSLSGIKSFLKYLKKR 105
           ++      ++    + +L  T +       R   I    +      LS       ++  +
Sbjct: 104 YIGHMDASEVRPHHLEELYGTLLDD--GAIRGGGIAPAKVLGVHWFLSAA---FDWMVAQ 158

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS----AILY 161
                +   +    + + +  RAL E +   L   +    +  ++  D           +
Sbjct: 159 GFCASNPAASASKPRPARAEARALTEGEISILAAELEARMADGSRDADGIRRRTVAFAAW 218

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG----------------DKIRIVPLLPS 205
           L    G+R  EA +L+  ++      L +                      +R V + PS
Sbjct: 219 LALNTGVRCGEACALSRSDVSLPLGDLYVHCTMTEPAGGPPARSRAKTASSVRHVLMGPS 278

Query: 206 VRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             +A  E+      +        PL     G  + P    R    LR  +GLP  T  HT
Sbjct: 279 AAQAAAEHIAWQDSWLPAARRDAPLLCAPDGSWMRPSAVSRGFSALRDEVGLPRDTHFHT 338

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNV 301
           LRH+ ATHLL  G  +  +   LGH +++ T + Y +V
Sbjct: 339 LRHTHATHLLREGVPMNEVSRRLGHSKVALTLEWYGHV 376


>gi|9628601|ref|NP_043466.1| integrase [Haemophilus phage HP1]
 gi|138561|sp|P21442|VINT_BPHP1 RecName: Full=Integrase
 gi|459175|gb|AAB09182.1| integrase [Haemophilus phage HP1]
          Length = 337

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 50/270 (18%), Positives = 96/270 (35%), Gaps = 29/270 (10%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKY 101
            +     L      +   +         +    S  +     + ++ R  + +++ F + 
Sbjct: 87  LKNLCSNLGDPPANEFNAKIFADYRKRRLDGEFSVNKNNPPKEATVNREHAYLRAVFNEL 146

Query: 102 LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
              RK TTE+ +  +R  K+  +    L E+    L+       + +          I+ 
Sbjct: 147 KSLRKWTTENPLDGVRLFKERETELAFLYERDIYRLLAECDNSRNPDLG-------LIVR 199

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           +    G R SEA +LT   +M  + T     K  K R VP+   +   + +       D 
Sbjct: 200 ICLATGARWSEAETLTQSQVMPYKITFT-NTKSKKNRTVPISKELFDMLPKKRGRLFNDA 258

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
             + +  +                    LR  + LP     H LRH+FA+H + NGG++ 
Sbjct: 259 YESFENAV--------------------LRAEIELPKGQLTHVLRHTFASHFMMNGGNIL 298

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            ++ ILGH  +  T  Y +    +    + 
Sbjct: 299 VLKEILGHSTIEMTMRYAHFAPSHLESAVK 328


>gi|296169729|ref|ZP_06851346.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895626|gb|EFG75323.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 325

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 62/305 (20%), Positives = 105/305 (34%), Gaps = 43/305 (14%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           NLP++           W+  L I  G  + T++      R            +IT+ T+ 
Sbjct: 7   NLPQL----WEAAISGWMIWLRIA-GKREGTIELRRDHLRSIARRSRTSGPAEITLSTLV 61

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            L              +K  +   K   + + SF  +     + + +    +  +K    
Sbjct: 62  LL-----------CSERKWSNDHRKSVRTSLISFYDWAIDADLVSMNPAAKLPRVKPDLP 110

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IM 182
            PR   +     L+         E          +  L    GLR +E   +   +    
Sbjct: 111 APRPAPDDVWEELL---AAAQPRE--------RLMARLAGEAGLRRAEVALVHSDDLIRD 159

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
               +L + GKG K R+ PL   +   +  +               LF G     ++   
Sbjct: 160 LHGWSLIVHGKGGKQRVAPLNDGLTAELRAFCT---------SHGYLFPGQVDGHISAEW 210

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               I +L      P   + H LRH FAT   S  G+LR++Q  LGH  ++TTQ YT V+
Sbjct: 211 VGTVISRLM-----PPGWSMHKLRHRFATLGYSGTGNLRAVQEALGHASVATTQRYTAVS 265

Query: 303 SKNGG 307
           ++   
Sbjct: 266 TREVR 270


>gi|294506550|ref|YP_003570608.1| Phage integrase family protein [Salinibacter ruber M8]
 gi|294342878|emb|CBH23656.1| Phage integrase family protein [Salinibacter ruber M8]
          Length = 413

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 51/292 (17%), Positives = 105/292 (35%), Gaps = 22/292 (7%)

Query: 35  TLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
           T +SY  D R+F  F+   Y  E++    I        R F  + R       ++ ++L 
Sbjct: 129 TFESYRSDLRKFRQFVEDQYGVEELPFDAIDVELVESFRTFCYEVREN--STNTVGKALE 186

Query: 94  GIKSFLKYLKKRKITTESNI--LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
            ++ F+                + + +      L   L+ K+   + D  L    ++  +
Sbjct: 187 TLRVFVNKALAEGKARSYPFKYIEIDSEPVQKDL---LDPKEIDQIADLDL----NDESF 239

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRIV---PLLPSVR 207
           +       L+  Y  G+R S+  +L  ++I       +R+  K  K       PL    +
Sbjct: 240 LAEVRRWFLFSYYTGGMRFSDVATLQWKHIRPGPSGYIRVHWKMQKTSDNVGVPLSEDAQ 299

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-----GVFQRYIRQLRRYLGLPLSTTA 262
           + +  Y D    +    I   +         +      G     ++ L    G+  + + 
Sbjct: 300 QILGYYEDGSEDEWVFPILEGISPDDGRAIYDRKKELNGDANDALKDLADRAGINKNASF 359

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN-VNSKNGGDWMMEI 313
           H  R++ A +L  N  D+  ++  LGH  +  T+ Y +    ++  D  +E 
Sbjct: 360 HLSRNAAAWYLNQNVRDIYKVRDFLGHSSVEQTERYLDGFEDESKDDVFLEA 411


>gi|117580239|dbj|BAF36554.1| IntI1 integrase [Pseudomonas aeruginosa]
          Length = 244

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 91/218 (41%), Gaps = 28/218 (12%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
             T+ ++ GKG K R + L  S+  ++ E         
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWW 199


>gi|313897273|ref|ZP_07830817.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312957994|gb|EFR39618.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 397

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 56/302 (18%), Positives = 104/302 (34%), Gaps = 34/302 (11%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
           +   +Q    +    E+K+  ++I  +  ++ + +  + + +     ++      +K+  
Sbjct: 100 KSTMKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMKDKGFSYNTINNHKRSLKASF 159

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
               +     ++      + K S  L     EK ALT      L +  +T  +  ++   
Sbjct: 160 YIAIQDDCVRKNPF----DFKLSEVLENDTKEKVALTEEQEQALLSFIKTDNVYHKHYDD 215

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLL 203
           + +L   GLRISE   LT  +I      + I                       R VPL 
Sbjct: 216 VLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGYYIETPKTKSGTRQVPLS 275

Query: 204 PSVRKAILEYYDLCPFDLNL---NIQLPLFRGIRGKP--------LNPGVFQRYIRQLRR 252
               +A        P             LF   +GKP        L   + ++Y +    
Sbjct: 276 KETIQAFQRVMKKRPKTDPFVIDGRSNFLFVNHKGKPKVAIDYNALFVRMVKKYNKHHMD 335

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMM 311
                   T HTLRH+F T L S   + + +Q I+GH  +S T   Y + +       + 
Sbjct: 336 --NPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQ 393

Query: 312 EI 313
            +
Sbjct: 394 RL 395


>gi|302538708|ref|ZP_07291050.1| predicted protein [Streptomyces sp. C]
 gi|302447603|gb|EFL19419.1| predicted protein [Streptomyces sp. C]
          Length = 354

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 54/325 (16%), Positives = 105/325 (32%), Gaps = 52/325 (16%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
            + RG +  T++ Y     + L               +  +   ++   +       +  
Sbjct: 43  WVVRGFAPTTVRGYGSLLARVLGCFDC---------PVWAVEADDVDEMLHALAVAGLAA 93

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMR----------------------NLKKSN 123
            + ++ L  +++F  ++ +R  T       +                             
Sbjct: 94  GTRRQYLQMLRAFHAFVAQRYETRVRAAFGVPVGNGGLDRFNHVRHAGDDAAVGAPPGRE 153

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            L    +       V + +   S       AR+ A+L   Y   +R+SE + L   ++  
Sbjct: 154 RLQTFFS------FVRSQVAVASD--YPAMARDYALLRTPYLSAVRVSELVCLDQADVHP 205

Query: 184 D---QSTLRIQ------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
                  L ++        G + R  P+L  + + +  Y              PLF    
Sbjct: 206 QLGPSGKLHVRFGKAANTSGPRPRWAPMLEGLDQILAWYLQDVRPLF--PATAPLFCDED 263

Query: 235 GKPLNPGVFQRYIRQLRRY--LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           G+ L  G  +  + +L     +G     T H LR + ATH    G DL ++Q +LGH  +
Sbjct: 264 GQALKAGTVRDRLARLLDLEGVGWDERFTPHALRRACATHQYERGMDLIAVQQLLGHRHI 323

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQT 317
           ++T  Y   + K   D      D  
Sbjct: 324 ASTMAYVKPSQKFVEDAWRRATDSA 348


>gi|149921212|ref|ZP_01909669.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149817983|gb|EDM77443.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 401

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 59/323 (18%), Positives = 124/323 (38%), Gaps = 25/323 (7%)

Query: 2   EGNNLPEIVSFELLKER-QNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
                P       L++  + ++ ++  +E+     ++ +    TR  L          + 
Sbjct: 58  RARKQPAPTGTPTLEQFAETYISEHCLVEQHR-PSSITN----TRSVLSAHILPILGDVA 112

Query: 60  IQTIRQLSYTEIRAFISK------RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI 113
           +  IR + + E++  +++      R+++ +  +++  +L+ +   +++  +R+       
Sbjct: 113 MDEIRSVHFGELKRAVARGRGTRGRKSKPVSGKTINNALAVLSRMVRFWYERE------- 165

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
             +   +    L R L+E +A                    +   I+ L+   G+R  E 
Sbjct: 166 -GLMPPRIKAGLVR-LDEPEADYYEPEEFEALVAGAAKAGLQELVIVLLMGDAGMRQGEI 223

Query: 174 LSLTPQNIMDD-QSTLRIQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLF 230
            +L   +I    + T+R+Q    K           ++I            L      P  
Sbjct: 224 RALHWSDIRKHPEPTIRVQRTRFKADEYAPKSKKGRSIPLSPRLVAALEALPRRRGCPHV 283

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
               G+PL P + +  I +  R  G+  +  +H LRH+FAT L++ G  L  I+ +LGH 
Sbjct: 284 IHEAGEPLTPKLVRGRIVRCERAAGMAETGLSHKLRHTFATRLVAAGVPLLVIKELLGHA 343

Query: 291 RLSTTQIYTNVNSKNGGDWMMEI 313
            L TTQ Y +  S      +  I
Sbjct: 344 DLRTTQRYLHTVSGARSQAIAAI 366


>gi|238764997|ref|ZP_04625934.1| Integrase [Yersinia kristensenii ATCC 33638]
 gi|238696766|gb|EEP89546.1| Integrase [Yersinia kristensenii ATCC 33638]
          Length = 334

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 96/234 (41%), Gaps = 29/234 (12%)

Query: 79  RTQKIGDRSLKRSLSGIKSFL-KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           RT+ +  R+L   L+ +++   +  +  +   ++ +  +R  +        L ++Q + L
Sbjct: 123 RTKGVTPRTLNIELAYMRAMFNELSRLSEWRYDNPLRGVRQYRTHEQEMAFLTKEQIVNL 182

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +      T  E        + ++ L    G R SEA SLT   +M  + T   + KG + 
Sbjct: 183 LKECENSTVPEL-------ATVVRLCLATGARWSEAESLTHTQVMPYKVTYT-KTKGKRN 234

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R +P+   +  ++                  LF            F+  ++  R  + LP
Sbjct: 235 RSIPISEELFNSL------------PKKTGRLFPSCY------SAFRTALK--RTNIKLP 274

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               +H LRH+FA+H +  GG++  +Q ILGH  +  T  Y + + ++    + 
Sbjct: 275 DRQCSHVLRHTFASHFMMKGGNILVLQRILGHTDIKMTMRYAHFSPEHFESALQ 328


>gi|237733524|ref|ZP_04564005.1| integrase [Mollicutes bacterium D7]
 gi|229383357|gb|EEO33448.1| integrase [Coprobacillus sp. D7]
          Length = 397

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 57/302 (18%), Positives = 104/302 (34%), Gaps = 34/302 (11%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
           +   +Q    +    E+K+  ++I  +  ++ + +  + + +     ++      +K+  
Sbjct: 100 KSTMKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMKEKGFSYNTINNHKRSLKASF 159

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
               +     ++      + K S  L     EK ALT      L +  +T  +  +    
Sbjct: 160 YIAIQDDCVRKNPF----DFKLSEVLENDTKEKIALTEEQEQALLSFIKTDNVYHKYYDD 215

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLL 203
           + +L   GLRISE   LT  +I      + I                      IR VPL 
Sbjct: 216 VLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGYYIETPKTKSGIRQVPLS 275

Query: 204 PSVRKAILEYYDLCPFDLNL---NIQLPLFRGIRGKP--------LNPGVFQRYIRQLRR 252
               +A        P             LF   +GKP        L   + ++Y +    
Sbjct: 276 RETIQAFQRVMKKRPKAEPFVIDGRGNFLFVNPKGKPKVAIDYSTLFVRMVKKYNKHHMD 335

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMM 311
                   T HTLRH+F T L S   + + +Q I+GH  +S T   Y + +       + 
Sbjct: 336 --NPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQ 393

Query: 312 EI 313
            +
Sbjct: 394 RL 395


>gi|317057351|ref|YP_004105818.1| XRE family transcriptional regulator [Ruminococcus albus 7]
 gi|315449620|gb|ADU23184.1| transcriptional regulator, XRE family [Ruminococcus albus 7]
          Length = 465

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 58/308 (18%), Positives = 107/308 (34%), Gaps = 38/308 (12%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G+S  T++ Y  D +Q ++  A      +     +             +  + +  +++K
Sbjct: 163 GVSAQTIK-YAWDGKQVMLTSAEKINAALGQPLAKTFDRI--------KTEKALTPKTIK 213

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             +S I S   Y  K K  +++   N    K           +QA   +D + L      
Sbjct: 214 NYVSFISSVFDYAIKIKAISDNPCKNAVLPKIPQKEHTMFTIEQAKQFLDILDL------ 267

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK---------------- 193
                +  A   L    G R  E L L   +I  D   + I+                  
Sbjct: 268 PETPVKYRAFFQLALFGGFRRGEILGLEWSDIDFDTGVIHIRRTVHYSKELGYYDTEPKS 327

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-----NLNIQLPLFRGIRGKPLNPGVFQRYIR 248
              +R + L  +V   + +  +             +    LF    G  +N      ++ 
Sbjct: 328 KKSVRALTLPENVIFTLKQLRNDQNSQRLILGDKWHNTERLFTSWDGHQMNGASPFGWLT 387

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGG 307
           ++     LP     H+ RH  A+ L+S+G D++++QS+LGH + STT  IY         
Sbjct: 388 KICAAYDLPK-VNLHSFRHLNASLLISSGVDVKTVQSVLGHSQASTTLDIYAAAFQDREA 446

Query: 308 DWMMEIYD 315
             +  + D
Sbjct: 447 QALGVVAD 454


>gi|262201386|ref|YP_003272594.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262084733|gb|ACY20701.1| integrase family protein [Gordonia bronchialis DSM 43247]
          Length = 390

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 105/279 (37%), Gaps = 32/279 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            LS+ T+ S   +T      +  +    +T+  IR    T +RA+++      +G  +++
Sbjct: 90  HLSQKTIAS--RETAYCCHVMPRWAG--VTVGDIR---VTAVRAWVADMAQAGVGVPTIE 142

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R++  ++   +     +  + +  +N++  ++S+     L+      L + +        
Sbjct: 143 RAVGVLRGLCELAVDDRRISANPCVNVKLPRRSHPDRAYLSVPHVQALAEAITFRPE--- 199

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK-------------GDK 196
                    ++ LL   GLR  E  +L   +    +  + +                   
Sbjct: 200 ---------VVELLAYTGLRWGEMAALRVSDFDMLRRRVDVSRSVTEVRGHLVWGTPKTH 250

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R     P+V    +          +L         +R     P VF + ++  +R    
Sbjct: 251 ERRSVPFPAVLAETIAPLMAGKGRDDLVFTAESGGVLRNSIWRPRVFDKAVKGCQRADDT 310

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             S + H LRH+ A+  +S G +++++Q +LGH + S T
Sbjct: 311 FPSLSPHDLRHTAASLAISAGANVKAVQRMLGHAKASMT 349


>gi|167553284|ref|ZP_02347034.1| integrase [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205322250|gb|EDZ10089.1| integrase [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
          Length = 342

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 64/321 (19%), Positives = 114/321 (35%), Gaps = 46/321 (14%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDT--------RQFLIFLAFYTEEKIT 59
           E ++FE    +  W +  E  R L +L    Y            RQ  +  AF    +  
Sbjct: 34  EALAFEQHTVQNPWQEEKEDRRTLKELVDSWYRAHGITLKDGLKRQLAMHHAFECMGEPL 93

Query: 60  IQTIRQLSYTEIRA------FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESN 112
            +      ++  R       +    R +++  R+L   L+  ++    L +      E+ 
Sbjct: 94  ARDFDAQMFSRYREKRLKGEYARSNRVKEVSPRTLNLELAYFRAVFNELNRLGEWKGENP 153

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           + NMR  +        L   Q   L+     H   + +        ++ +    G R SE
Sbjct: 154 LKNMRPFRTEEMEMAWLTHDQISQLLGECNRHDHPDLE-------TVVRICLATGARWSE 206

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
           A SL    +   + T     KG K R VP+   + +++ +           + +  LF  
Sbjct: 207 AESLKKSQLAKYKITYT-NTKGRKNRTVPISKELYESLPD-----------DKKGRLFSD 254

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             G            R      G+  P     H LRH+FA+H + NGG++  +Q +LGH 
Sbjct: 255 CYG----------AFRSALERTGIELPAGQLTHVLRHTFASHFMMNGGNILVLQRVLGHT 304

Query: 291 RLSTTQIYTNVNSKNGGDWMM 311
            +  T  Y +    +  D + 
Sbjct: 305 DIKMTMRYAHFAPDHLEDAVK 325


>gi|281425478|ref|ZP_06256391.1| integrase [Prevotella oris F0302]
 gi|281400471|gb|EFB31302.1| integrase [Prevotella oris F0302]
          Length = 428

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 57/289 (19%), Positives = 112/289 (38%), Gaps = 28/289 (9%)

Query: 35  TLQSYEC-DT--RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKR 90
           T  +Y   D   R F  FL        T   I +L+   +  F    +T       +  +
Sbjct: 129 TKANYRKFDICKRHFAKFLEEKYAR--TDLNIIELTPIVVHDFDVYLKTVVGQCFNTAIK 186

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           +L   K+ + + +K  +      LN+   K        L +++  T++           +
Sbjct: 187 TLKTFKTVIIFGRKAGVFNHDPFLNIH-FKTKRVDRGFLTDEEVDTIMHKEFA----TQR 241

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRIQGKGDKIRIVPLLPSVR 207
            ++ R+  +       GL   +  +LTP N   +   Q  +  + K D +  + LL   +
Sbjct: 242 LVNVRDIFLFSCF--TGLAYVDVANLTPDNIITMDGKQWIVTARQKTDTLSHILLLDIPK 299

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             I +Y                  G     L+      Y++++    G+  + T H  RH
Sbjct: 300 IIIKKYEGKAKN------------GRLIPILSNQRMNSYLKEIADVCGINKNLTFHMARH 347

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +FAT +L+ G  + S+  +LGH  ++TTQ+Y  + +K   + M+ +  +
Sbjct: 348 TFATMMLTKGVPVESVSKMLGHTSITTTQLYARITNKKIENDMLAVSKK 396


>gi|153815592|ref|ZP_01968260.1| hypothetical protein RUMTOR_01828 [Ruminococcus torques ATCC 27756]
 gi|145847023|gb|EDK23941.1| hypothetical protein RUMTOR_01828 [Ruminococcus torques ATCC 27756]
          Length = 397

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 57/298 (19%), Positives = 104/298 (34%), Gaps = 34/298 (11%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           +Q    +    E+K+  ++I  +  ++ + +  + + +     ++      +K+      
Sbjct: 104 KQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMKDKGFSYNTINNHKRSLKASFYIAI 163

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           +     ++      + K S  L     EK ALT      L +  +T  +  +    + +L
Sbjct: 164 QDDCVRKNPF----DFKLSEVLENDTKEKVALTEEQEQALLSFIKTDNVYHKYYDDVLIL 219

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVR 207
              GLRISE   LT  +I      + I                      IR VPL     
Sbjct: 220 LKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGYYIETPKTKSGIRQVPLSRETI 279

Query: 208 KAILEYYDLCPFDLNL---NIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGL 256
           +A        P             LF   +GKP        L   + ++Y +  +     
Sbjct: 280 QAFQRVMKKRPKAEPFVIDGRGNFLFVNQKGKPKVAIDYNMLFVRMVKKYNKHHKD--NP 337

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
               T HTLRH+F T L S   + + +Q I+GH  +S T   Y + +       +  +
Sbjct: 338 LPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQRL 395


>gi|70726004|ref|YP_252918.1| hypothetical protein SH1003 [Staphylococcus haemolyticus JCSC1435]
 gi|68446728|dbj|BAE04312.1| int [Staphylococcus haemolyticus JCSC1435]
          Length = 391

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 47/313 (15%), Positives = 106/313 (33%), Gaps = 43/313 (13%)

Query: 36  LQSYECDTR----QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           L+ Y  D +    +       +  E+   + I+ +   + + F+     Q      +   
Sbjct: 73  LKQYANDVKVSSVRAREKAIQHAIERFNTKPIQTIKKHDYQRFVDDISAQ-YSKNYVDSI 131

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL---------PRALNEKQALTLVDNVL 142
           ++      KY    ++        ++  KK  S+          + L + +    +    
Sbjct: 132 VASTNMIFKYAYDTRLIKAMPSEGIKRPKKKVSVEELEDIEIHKKFLEKDELFQFLKVAK 191

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI------------ 190
            H S +  +       +   L   G+R  E L+L   +I  + +T+ I            
Sbjct: 192 YHHSPQNSFE------VFTTLAYTGMRAGELLALKWSDIDFENNTISITKTYYNPNNNKK 245

Query: 191 ------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPG 241
                 +     I  + + P V + + +Y           + +    +F  + G PL   
Sbjct: 246 HYQILTRKTESSIGKITVDPHVIQLLKDYKVNVQDTWKNELYVDNNFVFTDVNGYPLVIK 305

Query: 242 VFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYT 299
             Q +I+ + +   +     + H+ R++    L+  G  ++ IQ  L H  ++TT  IY 
Sbjct: 306 KLQLWIKAILKKTDITNKQISTHSFRYTHYALLIEAGVHIKEIQERLRHKDINTTMNIYA 365

Query: 300 NVNSKNGGDWMME 312
            + +    D   +
Sbjct: 366 KITNSYKKDASQK 378


>gi|309802554|ref|ZP_07696658.1| site-specific recombinase, phage integrase family [Bifidobacterium
           dentium JCVIHMP022]
 gi|308220618|gb|EFO76926.1| site-specific recombinase, phage integrase family [Bifidobacterium
           dentium JCVIHMP022]
          Length = 273

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 62/311 (19%), Positives = 118/311 (37%), Gaps = 45/311 (14%)

Query: 6   LPEIVSFELLKERQN-WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           +    +  L  E  N WL +L+   G S  TL +  C        L           +  
Sbjct: 1   MHRSQATPLWAEYINGWLDSLKAA-GYSTATLHTRRCQMTAMGNALGG---------SPL 50

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            +    +  + +   +++    + K + +   SF ++++   +  +     + ++++  +
Sbjct: 51  DVGGNGLVGYFA---SKEWKPETRKSARNATVSFFRWIRAHDLRDDDPSQELPSVRRPQT 107

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
            PR   +K  L    + L   + E          +L L   CGLR SE  S++  ++MDD
Sbjct: 108 HPRPCPDKVIL----SALSKANDEE-------QLMLRLGAECGLRRSEIASVSSTDVMDD 156

Query: 185 --QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
               +L ++G  DK R+VPL   +   I  +               LF G     +    
Sbjct: 157 LVGRSLIVRGLYDKQRLVPLPDDLADLITAH------------HDYLFPGRWQGHVEASY 204

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             +++ +L          T H+LRH +AT       DL  +  +LGH  + TTQ Y  + 
Sbjct: 205 IGKHLSRLLD------GWTTHSLRHRYATRAYEATHDLLLVSKLLGHASVETTQRYVAMP 258

Query: 303 SKNGGDWMMEI 313
            +     +  +
Sbjct: 259 DERLRAGLEAV 269


>gi|323344390|ref|ZP_08084615.1| mobilizable transposon [Prevotella oralis ATCC 33269]
 gi|323094517|gb|EFZ37093.1| mobilizable transposon [Prevotella oralis ATCC 33269]
          Length = 418

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 55/304 (18%), Positives = 111/304 (36%), Gaps = 25/304 (8%)

Query: 16  KERQNWLQNL-EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           + +QN+++   ++     + +  S + +  +  + L  +  + +    I      + + F
Sbjct: 125 RLQQNFIKYFDKVADKRHRNSSLSIQTNWERVHVLLKMFAGDTLLFSQIDNRLAEDFKYF 184

Query: 75  ISKR-----RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +        +   I   +     S  K+ LK        T      ++ +++  S    L
Sbjct: 185 LLSAPCGGGKKGTISRNTASTYFSIFKAALKQAFIDGYLTIDLSAKIKGIQEQESRREYL 244

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              +      N L +T  E   +  + +A+   L   GLR  +   L    I  + +  +
Sbjct: 245 TLDEL-----NKLANTPCERDVL--KRAALFSAL--TGLRHCDIQKLKWNEIAIEGNQAK 295

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           +     K + V  +P   +A     +    +  +   LP          NP    R +R 
Sbjct: 296 LLFTQKKTKGVEYMPISEQAFKLCGEPRQPEQLVFEGLP----------NPSWISRPLRA 345

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+    + H  RH+FAT  L+NG D+ ++  +LGH  + TTQ+Y  V  +     
Sbjct: 346 WIEKAGIQKHLSFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKVVDEKKNKA 405

Query: 310 MMEI 313
              I
Sbjct: 406 ANAI 409


>gi|315172125|gb|EFU16142.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1342]
          Length = 383

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 52/302 (17%), Positives = 111/302 (36%), Gaps = 40/302 (13%)

Query: 42  DTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY 101
           D R+ + F   Y  +      +++L+  E +  ++    +     S+K+  + +++ LK 
Sbjct: 92  DIRRAVDFSEKYFPD----TKLKELTRQEYQKALND-YGETHATASVKKHHTYMRAALKD 146

Query: 102 LKKRKITTESNILNMRNLKKSNSLP---RALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
             +  I        ++ + K N      + LN ++++ LV  +L     E       +  
Sbjct: 147 ALEEGIIHRDPTYRVQAIGKKNPKHEELKYLNYQESIHLVHEIL-----EGIKPTYTSRF 201

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-------------- 204
           I+      G R SE + +T   I     T+++    D                       
Sbjct: 202 IILFGIATGCRFSEIIGMTWDCIDFKNKTVKVNKTWDYKYTNTFSNTKNYQSKRIITIDD 261

Query: 205 ---SVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
               + K +  +         L  +  L F     + ++     + +R+  R +G     
Sbjct: 262 DTLDLLKKLQLHQKEYYLKSGLRNENNLVFLNDNMELVSNTAVNKVLRKFCRKIG-TKEL 320

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGG-------DWMME 312
           T H LRH+ A+ +L  G +++ +   LGH  + TT Q Y ++  +          + M +
Sbjct: 321 TCHGLRHTHASIMLYKGINIKYVSRRLGHKDIVTTLQTYQHILDEMEQKESNAVNEVMKQ 380

Query: 313 IY 314
           +Y
Sbjct: 381 MY 382


>gi|229489816|ref|ZP_04383673.1| integrase/recombinase [Rhodococcus erythropolis SK121]
 gi|229323326|gb|EEN89090.1| integrase/recombinase [Rhodococcus erythropolis SK121]
          Length = 360

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 67/339 (19%), Positives = 117/339 (34%), Gaps = 59/339 (17%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           ++R  +LQ    ERG    T+   E   R+F  F   Y             + ++  A+I
Sbjct: 27  QQRSRFLQ----ERG----TIAPRERVLRRFAAFTGLYPW---------DWTPSDAEAWI 69

Query: 76  SKRRTQK--IGDRSLKRSLSGIKSFLKYLKKRKI-----------------TTESNILNM 116
           S+ R+    +   +++     I+ F +YL  ++                    E N +  
Sbjct: 70  SELRSGNSPLALSTIRGYEVMIRLFCEYLIDQRYGWVDICTEQFGNAPDLIFHEGNSVLH 129

Query: 117 RNLKKSNSLPRALNEKQALTLVD------NVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
               + +   R L   +   L D        +  T  +      R+SA+L   Y  GLR 
Sbjct: 130 VAEYEGDPRRRPLTYDEVQALFDAADSRVETIRRTGRKGSLAAIRDSAMLKFTYAFGLRR 189

Query: 171 SEALSLTPQNIMDD--------QSTLRIQ---------GKGDKIRIVPLLPSVRKAILEY 213
           SE   +   ++  +          ++ I+          K   +  VP +  + + +  Y
Sbjct: 190 SEVARVDIVDLRRNVKAPQYSRMGSVSIRYGKASRGGPPKRRTVLTVPEMDWIVEVLEHY 249

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                   +      L+   R   ++           R   GL  S   H LRHS+ THL
Sbjct: 250 LTDVRPAYDPKKHPALWVTERVTRISGRAVNEAFTTARLLAGLDDSLDLHCLRHSYITHL 309

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           +      R +Q   GH   STT IYT V++      ++ 
Sbjct: 310 IEFDYPERFVQEQAGHAFASTTAIYTGVSNDYRNQLLVR 348


>gi|227512453|ref|ZP_03942502.1| bacteriophage integrase [Lactobacillus buchneri ATCC 11577]
 gi|227084426|gb|EEI19738.1| bacteriophage integrase [Lactobacillus buchneri ATCC 11577]
          Length = 374

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 54/308 (17%), Positives = 120/308 (38%), Gaps = 34/308 (11%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L      W Q  +  +GL+  T+Q Y         F             ++++++T+ + 
Sbjct: 62  LPDFFNEWYQTFKSPKGLADNTVQIY--------AFTKHVLANSSLNMPLKEITFTDYQQ 113

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLP-RALNE 131
           F ++   ++    SL++  + I++ ++   + +    +   ++  + K S  L  + L  
Sbjct: 114 FFNQL-GKRYSVSSLRQVNTIIRACVRKALQMRQIPYNFTDDVEISGKASAPLSSKYLEV 172

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
                L D  + +    T        AIL+ L   G R +E   +T   +   + T+ I 
Sbjct: 173 DDIKKLTDYCVANIKEITDVSKM---AILFSLL-TGARFAEVAGMTWDCVNFKEKTITIN 228

Query: 192 GKGD-------------KIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLP---LFRGIR 234
                             +R + +  ++   + ++        L +  + P   +F    
Sbjct: 229 KTIGMQSRTFEKTKNSSSVRTLSINFTLLTMLQKWKLISDHHMLKVGFKNPMNLVFYTPF 288

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            +PL   +    ++++ R   L    + H LRHS A++L++ G  ++ +   LGH  + T
Sbjct: 289 HRPLYNSMVNNDLKKICRK-NLSQEISFHGLRHSHASYLIAKGISVQYVSKRLGHKSIGT 347

Query: 295 TQ-IYTNV 301
           TQ +Y + 
Sbjct: 348 TQNVYIHF 355


>gi|269956536|ref|YP_003326325.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894]
 gi|269305217|gb|ACZ30767.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894]
          Length = 362

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 64/341 (18%), Positives = 113/341 (33%), Gaps = 33/341 (9%)

Query: 7   PEIVSFELLKERQNWLQNLE--IERG-LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           P +    +      +L ++     RG LS  T +SY  D  +    L             
Sbjct: 5   PRLTLLTVGDAVDRYLASVRKDAVRGVLSPATARSYTRDVTELASLLGPLRVLDDVTGDD 64

Query: 64  RQLSYTEIR-----AFISKRRTQKIGDR--SLKRSLSGIKSFLKYLKKRKITTESNILNM 116
              +    +      F    R +  G    ++ R       F  +  +        +L  
Sbjct: 65  VDDALVRYQGSPDARFTDPDRKRGPGRSVATVNRFRQSATRFFSHAARECWVQADPMLWA 124

Query: 117 RNLKKSN---SLPR-ALNEKQALTLVDNVLLHTSHETKWIDA----RNSAILYLLYGCGL 168
               +      + R AL    A  L++     T       D     R+  ++ LL   G 
Sbjct: 125 APPARVRGGLRVARTALTSAAAQALLETSADTTPPARSRHDQDLALRDRLVVALLLVLGP 184

Query: 169 RISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--- 223
           R+SE      +++  +      RI GKG  +R V L   +   + EY       L     
Sbjct: 185 RVSELAGADVEDLAREPGQTRWRIVGKGGVVRTVALSEPLAATLDEYVTGLRPRLAALRP 244

Query: 224 ---NIQLPLFRGIRGKPLNPGVFQRYIRQLRRY--LGLPLSTTAHTLRHSFATHLLSNGG 278
              + Q  L    RG+ ++    +  + +             T H LRH+ AT L++ G 
Sbjct: 245 DDDDAQRALLLTWRGRRVDTQAIRGLLARAVGRMPAPYRRPATPHALRHTTATLLVAQGW 304

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           D++ +  +LGH  ++TT +Y +         +       HP
Sbjct: 305 DVKVVAELLGHASIATTGVYLDRIEGELAAAIR-----AHP 340


>gi|298484397|ref|ZP_07002556.1| integrase [Bacteroides sp. D22]
 gi|298269461|gb|EFI11063.1| integrase [Bacteroides sp. D22]
          Length = 431

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 69/310 (22%), Positives = 120/310 (38%), Gaps = 31/310 (10%)

Query: 14  LLKERQNWLQNLE--IERG-LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           +LK+ +N  +  E  +E+G  +K T   Y      F  FL  + ++K T    ++L+   
Sbjct: 111 ILKDFENMNREFEAMVEKGQRAKSTYNKYLAVYNHFATFL--WEKKKRTDMAYKELTKEI 168

Query: 71  IRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           I  F    R  + + D +L      + S      +R I          +L+   +    L
Sbjct: 169 ITDFDKYLRVEKGLSDNTLWIYTMPLLSLTDKAWRRGIVRSDPFGEY-SLEMQETDRGYL 227

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ-----NIMDD 184
            E++  TL + V +      K        +       GL   +  +LT       +   +
Sbjct: 228 TEEELRTLANAVFV------KKQTNLVRDMFLFGCFTGLSYIDIKTLTHDKIQRMDFDGE 281

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           +  +  + K      VPL+   ++ I  Y  L   D        +F        + G   
Sbjct: 282 EWIITRRTKTRVSSNVPLMEIAKELIERYKGLAGGDF-------VFPMP-----SNGTCN 329

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           ++++Q+ +  G+      H  RH+FAT   L NGG + ++  ILGH  +STTQIY  V +
Sbjct: 330 KHLKQIAKACGISKEIGFHLSRHTFATTVYLCNGGTIEALSKILGHKHISTTQIYAEVTN 389

Query: 304 KNGGDWMMEI 313
           K        I
Sbjct: 390 KMVSSDFRAI 399


>gi|288817618|ref|YP_003431965.1| phage integrase [Hydrogenobacter thermophilus TK-6]
 gi|288787017|dbj|BAI68764.1| phage integrase [Hydrogenobacter thermophilus TK-6]
 gi|308751216|gb|ADO44699.1| integrase family protein [Hydrogenobacter thermophilus TK-6]
          Length = 288

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 59/295 (20%), Positives = 112/295 (37%), Gaps = 42/295 (14%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +ER  S  T+ +Y      F+        + I  + +  +    I  ++    T  +   
Sbjct: 14  LERTKSARTVITYIKSLESFI--------KHIGEKDLIHIDPRRIYEYVD---TSSLNTS 62

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK----------KSNSLPRALNEKQALT 136
           S+   LS IK F K+  +R    +    ++ ++            +   P+AL E++   
Sbjct: 63  SILTHLSAIKHFYKFAFRRGYVDKEKYSDIESVIDEVREDLGRNIAKRYPKALTEEEINK 122

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGK 193
           ++  V      +          I  L    G+R+SE LSL   +   D+S    +R+   
Sbjct: 123 ILSAVKGAKYEK----------IYVLFLYSGIRLSEYLSLRKSDFYQDKSGLLWIRLSAD 172

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
             K R   L+P +  +  E Y +    L                +  G  Q +  +L R 
Sbjct: 173 ITKRRKERLVPVLGSSKEETYAVIDRLLVWIESY-----EENFRVKRGSLQVFTNRLSRK 227

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGG 307
           L +P   + H+ RH++ T+L+++G     ++   GH  + TT  IY   + +   
Sbjct: 228 LCIPF--SLHSFRHTYITNLVNSGFPAEVVKEFAGHSNVRTTIDIYYKFSQERAR 280


>gi|326201197|ref|ZP_08191069.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
 gi|325988765|gb|EGD49589.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
          Length = 235

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 91/230 (39%), Gaps = 18/230 (7%)

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKK------SNSLPRALNEKQALTLVDNVLLHTSHE 148
           +  FL+  +      ++    +R   +      S  LP    E +     + V   +   
Sbjct: 15  LAKFLREERPDYYYLKNVFRELRKELEVEIQADSKKLPYVPTEDELKRYYNEVWNSS--- 71

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVR 207
               + ++  I+  L   G+R+SE +++   N+      +RI  GKG+K RIVP   S +
Sbjct: 72  ----NFQDMLIIKTLLYTGVRVSELINIKLDNVDFQDCQIRINNGKGNKDRIVPFPHSFK 127

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + +  +++    ++  N    LF     K       ++ + +      L  S + H LRH
Sbjct: 128 ELLAMHHN----NMKKNNASYLFESSWKKKYTDRGIRKIMAKYSEKANLQKSLSPHKLRH 183

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              T L   G D   IQ   GH    T ++Y+ ++  +  +   E+  + 
Sbjct: 184 FLFTWLKKQGIDDSLIQPYSGHESRQTLEVYSKLSLADAQEKYNEVIAKF 233


>gi|327335549|gb|AEA49955.1| integrase [Aeromonas hydrophila]
          Length = 239

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 91/218 (41%), Gaps = 28/218 (12%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
             T+ ++ GKG K R + L  S+  ++ E         
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWW 199


>gi|120401497|ref|YP_951326.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|120406881|ref|YP_956710.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|145221183|ref|YP_001131861.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
 gi|315441527|ref|YP_004074404.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|119954315|gb|ABM11320.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119959699|gb|ABM16704.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|145213669|gb|ABP43073.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
 gi|315265182|gb|ADU01923.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
          Length = 355

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 57/311 (18%), Positives = 103/311 (33%), Gaps = 32/311 (10%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
              RG S +T+ +   D       L              +++  +I   + +        
Sbjct: 39  WHARGFSPVTIDN---DIGLLERTLTALG------CPAWEVTSEDIDRVVGELAMAGRAA 89

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL----------KKSNSLPRA---LNEK 132
            + +  +   K F ++L+ RK          R +             +  P        +
Sbjct: 90  STRREYVQIFKGFHRFLQTRKAAEIEAAFGARLVCPVDEFNASRHVGDDSPAVAAPPTPE 149

Query: 133 QALTLVDNVLLHTSHETKW-IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TL 188
           +     + +    +   K+   AR+ A+   LY  GLR  E+  L   ++  D+     L
Sbjct: 150 RVSAFFEFLKTRIATARKYGPAARDYAMFRTLYHAGLRSEESALLEIPDVHFDRGPFGKL 209

Query: 189 RIQ----GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
            ++          R   +       +L  + L            LF    G  L+ G  +
Sbjct: 210 HVRFGKAAHMSGPRPRWVPMLDGLDVLLQWFLADVRPKFPNSPVLFADESGGALHRGTIR 269

Query: 245 RYIRQLRRYLGLP--LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             +R L    G P     + H LR + ATH    G DL +IQ +LGH+ +S+T  Y   +
Sbjct: 270 NRLRYLMELEGRPATERFSPHALRRACATHNYERGVDLVAIQQLLGHWTVSSTMRYVRPS 329

Query: 303 SKNGGDWMMEI 313
           +    D     
Sbjct: 330 ATFIEDAYRRA 340


>gi|254244434|ref|ZP_04937756.1| hypothetical protein PA2G_05292 [Pseudomonas aeruginosa 2192]
 gi|126197812|gb|EAZ61875.1| hypothetical protein PA2G_05292 [Pseudomonas aeruginosa 2192]
          Length = 333

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 93/238 (39%), Gaps = 32/238 (13%)

Query: 77  KRRTQKIGDRSLK---RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +RR  ++   ++    R LS +  F + ++      E+ +  +R +K        L+  Q
Sbjct: 107 QRRLTEVKPETVNHEQRYLSAV--FSELIRLGSWHKENPLGKVRQIKTDQVELTFLSLDQ 164

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++     T++ T  +         L    G R  EA SLT   +   +     + K
Sbjct: 165 VARLLEECKASTNNHTYPVA-------LLCLATGARWEEAESLTRGAVHGGKVHYH-RTK 216

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
             + R VP+   + + I        F + +     LF   R             R   + 
Sbjct: 217 NRQSRSVPIPDELERLI--------FKVGMPGSGRLFMSCR----------AAFRCAYQR 258

Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            G        H LRH+FA+H +  GGD+ ++Q ILGH  ++ T  Y +++ ++    M
Sbjct: 259 CGFQTPGQMTHILRHTFASHYMMGGGDILTLQRILGHSSITMTMRYAHLSPEHLASAM 316


>gi|170758955|ref|YP_001787247.1| site-specific recombinase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405944|gb|ACA54355.1| site-specific recombinase [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 376

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 53/350 (15%), Positives = 121/350 (34%), Gaps = 79/350 (22%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR---------- 79
             ++ TL+ Y    + +  ++             + ++  ++  F++  +          
Sbjct: 39  NYARNTLRMYCQHLKLYFEYMQQRN------LNFQDVTIDDLALFVNWLQNPYESLKVIP 92

Query: 80  ----TQKIGDRSLKRSLSGIKSFLKYLKKRKITTES------------------------ 111
                     R++   ++ + +F  Y+ + +  + +                        
Sbjct: 93  SVHVESARSPRTINIIINTVLAFYDYILRHEEYSNNISDRLKRFVSIPSRNFKGFLYGIA 152

Query: 112 -----NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
                   N+  LK   S P+ LN+++   LV              + R+  +L LLY  
Sbjct: 153 YEQKKVTSNILKLKVPKSKPKILNKEEIEMLVRAC----------NNLRDKFLLSLLYET 202

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKI-----------RIVPLLPSVRKAILEYYD 215
           G+RI EALSL  ++       + ++ +G              R + +  ++    +EY  
Sbjct: 203 GMRIGEALSLWIEDFDISDMIIDLKDRGQLENNAEIKTVSSPRRIDISQNLADMFMEYIA 262

Query: 216 LCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
               +     +I + +    + K +N        R L++   +    T H  RHS  T L
Sbjct: 263 EYHTEEVETNHIFIKISGNNKYKAMNYIDVDNLFRTLKKKTEI--YVTPHMFRHSSLTVL 320

Query: 274 LSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQTHPSIT 322
              G     ++   GH  + TT   Y + + +     + + +++T P++ 
Sbjct: 321 RMAGWQPELLRIRAGHKNIYTTMNTYIHPSDEE----ITKEFEKTRPNLD 366


>gi|315615273|gb|EFU95909.1| integrase [Escherichia coli 3431]
          Length = 343

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 63/331 (19%), Positives = 117/331 (35%), Gaps = 59/331 (17%)

Query: 8   EIVSFE--LLKER--QNWLQNLEIERGLSKLTLQSY------ECDTRQFLIFLAFYTEEK 57
           E ++FE   ++E   + WL   +  R LS+L    Y        D ++ +  L       
Sbjct: 34  EAIAFESFTMEEVNKKPWLGEKDDRRRLSELIELWYSLYGQTLADPKRLMAKLRIIC-NG 92

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKI-----------GDRSLK---RSLSGIKSFLKYLK 103
           +      +L+  +   +   R   +I             R++    R+LS +  F    K
Sbjct: 93  LGDPIASELTAGDFTKYREARLKGEIRNEDGTLMSPVKPRTVNLEQRNLSSV--FGTLKK 150

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
               +  + +  +   K +      L+  +   L+       S            I  + 
Sbjct: 151 LGHWSAPNPLAGLPTFKIAEGELAFLSTDEIKRLLAACAESQS-------PSLLMIAKIC 203

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
              G R SEA +L   + +        + KG K R VP+   +   +             
Sbjct: 204 LATGARWSEAENLQ-GHQLSKYRITYTKTKGKKNRTVPISQDLYNEL------------- 249

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLR 281
               P  RG    P      ++   +  +  G+  P     H LRH+FA+H + NGG++ 
Sbjct: 250 ----PKNRGRLFTPC-----RKAFERAVKRAGIELPEGQCTHVLRHTFASHFMMNGGNIL 300

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            ++ ILGH  +  T IY + +  +  D + +
Sbjct: 301 VLRDILGHADIKMTMIYAHFSPDHLEDAVTK 331


>gi|255103342|ref|ZP_05332319.1| integrase [Clostridium difficile QCD-63q42]
 gi|255652432|ref|ZP_05399334.1| integrase [Clostridium difficile QCD-37x79]
          Length = 370

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 57/310 (18%), Positives = 118/310 (38%), Gaps = 41/310 (13%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L+  + +  +S  T +SY       +     +    I    +++L    I+ +I    
Sbjct: 70  DFLE--KYKDNISASTYKSY-------IAICKNHINPSIGKYRLQELRNIHIQNYIDDL- 119

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +  +++K  ++ ++  +K   + K+  E+ I  + + +         +++Q L L++
Sbjct: 120 AGNLNPQTIKVHINVLRLAIKRAYRIKLIKENIIDGIESPRIKKFKNEIYDKEQMLKLLE 179

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG------- 192
                               + L  G GLR+SE L LT  NI  D++T+ +         
Sbjct: 180 V----------AKGTNLELPISLAIGLGLRLSEVLGLTWDNIDFDENTITVNKITSRLDG 229

Query: 193 --------KGDKIRIVPLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNP 240
                       +R +     +   +  Y       L      N    LF   +G P+  
Sbjct: 230 SVILKEPKTESSVRKIFAPIELMNLLKNYRLEQNKKLLRSIVRNEYNLLFFDRKGNPIAE 289

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYT 299
            V  +  R+      LP     H LRHS  T L+++   ++ I   +GH  ++TT  +Y+
Sbjct: 290 DVMSKKFRKFLENNDLP-HIRFHDLRHSHVTLLINSKVPIKVISERVGHSNINTTLNVYS 348

Query: 300 NVNSKNGGDW 309
           +V  +   + 
Sbjct: 349 HVLKEMDKEA 358


>gi|325301789|gb|ADZ05801.1| integrase [Acinetobacter baumannii]
          Length = 227

 Score =  108 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 92/218 (42%), Gaps = 28/218 (12%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVNWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            ++++ +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLESEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
             T+ ++ GKG K R + L  S+  ++ E         
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWW 199


>gi|70730407|ref|YP_260148.1| phage integrase family site specific recombinase [Pseudomonas
           fluorescens Pf-5]
 gi|68344706|gb|AAY92312.1| site-specific recombinase, phage integrase family [Pseudomonas
           fluorescens Pf-5]
          Length = 313

 Score =  108 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 110/278 (39%), Gaps = 12/278 (4%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           + L+  +  +     +     L  Y E+ +       L    + A ++  R       + 
Sbjct: 23  KRLAPSSQSTLRYVLQDAADRLG-YAEQNLEEIPWHLLQPEHVTALVATLREDGYAPNTS 81

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLLHTS 146
              ++ ++  +    +  + ++ ++L MR++K      L R  N K    L+  ++   +
Sbjct: 82  SLYVNALRGVMNEAWRASLISQDHLLKMRSVKAISGTRLARGRNLK--RGLIHELMAVCA 139

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
            + +    R++A++ LLYG G+R SE+++L    +   + +L++  KG++  I       
Sbjct: 140 SDPRPQGVRDAALIALLYGSGMRKSESVNLDLAQVDFSERSLQVLAKGNRQLIKYAPTWA 199

Query: 207 RKAILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNP-GVFQRYIRQLRRY--LGLPLST 260
              +  + +L    L   +    F   R  RG  +    + +  I  + R     + +  
Sbjct: 200 FDKLQAWLELRRRHLPAGLVDDPFLFNRIRRGGHITRERITKHAIYYIARQRGAQVGVRI 259

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             H  R SF T ++    DL   Q +  H  + TT  Y
Sbjct: 260 MPHDFRRSFITRVIEE-HDLSLAQKLAHHSNIQTTASY 296


>gi|329964141|ref|ZP_08301307.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328525661|gb|EGF52690.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 426

 Score =  108 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 57/296 (19%), Positives = 112/296 (37%), Gaps = 23/296 (7%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           ++ L  E G S  T ++Y         F A      +     +++ Y  +  ++   RT+
Sbjct: 127 IEELRGE-GKS-GTAEAYVSGLNSLRRFCA------LGKLRFKEVDYAFVTDYMHYLRTR 178

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           +I + ++   LS  ++     +K+ +     +   ++ N +   +L RAL +++   +  
Sbjct: 179 RISENTVGMYLSCFRAVYNKARKQGVEVREGNPFADL-NFRVQETLKRALTKEEIARIAR 237

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGC-GLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
             L       +  D     +    + C G+   + + L    I+    TL  +      R
Sbjct: 238 VDLRRHPRMEEARD-----LFMFSFYCRGMSFVDVIHLRRDCIV--NGTLFYERNKTGQR 290

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLP 257
           +   +      I+E Y      L   I +   R +      + G+  RY+++L   L + 
Sbjct: 291 LQVGMLPCMYEIIEKYRSRSPYLFPCIDVASSRTVYTQYRYSLGMINRYLKRLGELLHIA 350

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              T +  RHS+AT   + G  +  I   LGH    TT+IY         D M  +
Sbjct: 351 TPLTTYVARHSWATIAKNEGVPVSIISEGLGHTSEKTTRIYL---DSFTNDTMNRV 403


>gi|298374817|ref|ZP_06984775.1| integrase [Bacteroides sp. 3_1_19]
 gi|298269185|gb|EFI10840.1| integrase [Bacteroides sp. 3_1_19]
          Length = 408

 Score =  108 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 61/320 (19%), Positives = 133/320 (41%), Gaps = 27/320 (8%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLS 67
           + FE+ +E  +  + L I +  +K+T+     DT   L +      ++  ++ I  ++++
Sbjct: 109 MFFEVFQEHNDKCREL-IGKDYAKVTVS--RFDT--CLKYFKEMLLKQYHLKDIPMKEIN 163

Query: 68  YTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
              I+ +I   +++K + + ++ R +  +K             ++  +N+   ++     
Sbjct: 164 NAIIQDYIHFLKSKKNLQENTVIRYMKVVKKITNMALANDWIDKNPFMNIHFHEQEVH-- 221

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQ 185
                K+ LT  +  +L T             I       GL   +   L P++++ D++
Sbjct: 222 -----KEFLTKEELEILRTKVFNVPRLELVRDIFLFQCWTGLAFIDVSELKPEHLVTDNE 276

Query: 186 STLRIQGKGDKIRIVPLLP--SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
             + I+    K +I+  +P   +  AIL+ Y   P        LP+    +         
Sbjct: 277 GNIWIRKARQKTKIMCNIPLLDIPLAILDKYKGYPICEKKGTLLPVPCNQKA-------- 328

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             Y++++  + G+  + T HT RH+F+T + L+N   L ++  +LGH     TQ Y  V 
Sbjct: 329 NSYLKEIADFCGIKKNLTTHTGRHTFSTVVTLANNVSLENVSKMLGHTNTKMTQRYAKVL 388

Query: 303 SKNGGDWMMEIYDQTHPSIT 322
            ++    M  + +   P  T
Sbjct: 389 DQSILRDMQNVRENFSPKTT 408


>gi|229060296|ref|ZP_04197663.1| DNA integration/recombination/invertion protein [Bacillus cereus
           AH603]
 gi|228719023|gb|EEL70639.1| DNA integration/recombination/invertion protein [Bacillus cereus
           AH603]
          Length = 369

 Score =  108 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 53/315 (16%), Positives = 110/315 (34%), Gaps = 39/315 (12%)

Query: 18  RQNWLQNLEIERGLS--KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            +++L +    + +S  + T   Y         F+  +    I + T+ +L+   I+   
Sbjct: 65  LKDYLNHWLEIKSMSIEESTFACYR-------AFINQHVIPSIGMITLHKLNVMHIQKCY 117

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                + I + S+      +KS L    K+ + + +        KK  +  +   E++  
Sbjct: 118 KSSIDKGITNNSILLMHRILKSSLNLAVKQNVLSRNPAAFAEIPKKEKTSIQTWTEEEVK 177

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---- 191
                 LLH+      I         L    G+R+ E L L  Q++  ++ T+ I     
Sbjct: 178 KF----LLHSQESRYHIGY------LLAITTGMRLGEVLGLRWQDVDFEKHTVTINQTSG 227

Query: 192 ---------GKGDKIRIVPLLPSVRKAILEYYDLCPFDL-----NLNIQLPLFRGIRGKP 237
                          R +P+     +++ ++      +             +     G  
Sbjct: 228 HNNKIKKTAKTNSSKRTIPVPKETIESLKKHKITINKEKLRLGSAYQDLELINCNEFGMV 287

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
           +    F+ +  +     G+      H LRH+ AT LL  G + + I   LGH  +S T  
Sbjct: 288 IKRATFRNHFIRTTHNAGI-KEIKFHDLRHTHATILLKQGVNAKIISERLGHTDISMTLN 346

Query: 297 IYTNVNSKNGGDWMM 311
           +Y++V      + + 
Sbjct: 347 VYSHVLPNMQEEAVK 361


>gi|229181836|ref|ZP_04309144.1| DNA integration/recombination/invertion protein [Bacillus cereus
           172560W]
 gi|228601634|gb|EEK59147.1| DNA integration/recombination/invertion protein [Bacillus cereus
           172560W]
          Length = 369

 Score =  108 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 56/315 (17%), Positives = 113/315 (35%), Gaps = 39/315 (12%)

Query: 18  RQNWLQNLEIERGLS--KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            + +L +    + +S  K T   Y         F+  +    I +  + +L+   I+   
Sbjct: 65  LKEYLNHWLEIKSMSIQKSTFAGYR-------AFINQHVIPSIGMVALHKLNVMHIQKCY 117

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                + I + S+      +KS L    K+ I + +        KK  +  +   E++  
Sbjct: 118 KTAIDKGITNNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKTPIQTWTEEEVK 177

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
             + +     S E+++      AI       G+R+ E L L  Q+I  ++ T+ I     
Sbjct: 178 KFLSH-----SQESRYHIGYLLAI-----TTGMRLGEVLGLRWQDIDFEKHTVTINQTSG 227

Query: 196 KI-------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP----- 237
                          R +P+      A+ ++  L   +        L + +         
Sbjct: 228 HDNKIKKTAKTNSSKRTIPVPNETIVALKKHKTLINKEKLRFGSAYLDQDLINCDEFGRI 287

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
           +    F++   +    +G+      H LRH+ AT LL  G + + I   LGH  +S T  
Sbjct: 288 IKRAHFRKSFIRATHKVGI-KEIKFHDLRHTHATILLKQGVNPKIISERLGHTDISMTLS 346

Query: 297 IYTNVNSKNGGDWMM 311
           +Y++V      + + 
Sbjct: 347 VYSHVLPNMQEEAVK 361


>gi|323441307|gb|EGA98973.1| integrase [Staphylococcus aureus O46]
          Length = 354

 Score =  108 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 101/284 (35%), Gaps = 15/284 (5%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T ++Y         F  F   E I+   +  L+ T  R FI           ++++  + 
Sbjct: 73  TDKAYATFKNAINQFKTFLEVENISNLVLSDLNTTFYRKFIKW-YGSNHSTETVRKIHNC 131

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +K  +    +  +  +     +       ++P    E++ +++ D + L        I +
Sbjct: 132 LKQPIDDAIQEGLIHKDPTYKVV---VKGTIPAQREEEKFMSIKDFINLKEYVSNTPIQS 188

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK--IRIVPLLPSVRKAILE 212
                +Y+L   G R  E   L   ++     T+ + G   +   R V +  +  K +  
Sbjct: 189 --YLFIYILIITGGRFGEVQRLCTSDLDYKNCTIHLPGTKTETSDRTVDIPQNDMKILKN 246

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                P  L   +            +      + +++      +    T H++RH+  ++
Sbjct: 247 TLAEMPISLTTQLF-----NTGTSLITHNAVTKVMQRYCLEKRIGKY-TLHSIRHTHCSY 300

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYD 315
           LL NG  +  I   LGH  + TT  +Y+++  +       +  D
Sbjct: 301 LLHNGVSIYYISKRLGHKSIKTTMDVYSHLLDEIEQKEKEKALD 344


>gi|322436150|ref|YP_004218362.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321163877|gb|ADW69582.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 411

 Score =  108 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 67/360 (18%), Positives = 117/360 (32%), Gaps = 79/360 (21%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
             +L  L + R  S  T ++Y      F  +L     E        +++   I  +I+  
Sbjct: 31  DEFLFQLRL-RDCSVYTQRAYALGLAHFFTWLGANGVEP------ERVTRQVIGRYIADF 83

Query: 79  RT-------------QKIGDRSLKRSLSGIKSFLKYLKKRKITT--------ESNI---- 113
                          +    R++   LS + SF  +  +R             +      
Sbjct: 84  GESEPGGAVTTRAAPKARSARTVNHRLSVLASFFDFHIRRDTEDGAGPWCGRTNPASGKL 143

Query: 114 --LNMR--------NLKKSNS----------LPRALNEKQALTLVDNVLLHTSHETKWID 153
               +R          +              +P+ +  ++   L+D              
Sbjct: 144 LDRELRHGMMGRDLPPRTRQRDGFRRRVPYEVPKRIEPEEVQRLIDA----------ASS 193

Query: 154 ARNSAILYLLYGCGLRISE---------ALSLTPQNIMDDQSTLRIQGKG-DKIRIVPLL 203
            R+ A L LL   G RI +          L ++  ++   +  + ++ KG      VP+ 
Sbjct: 194 FRDKANLTLLCRTGQRIGDWNESAGRHGILGMSLSDVDRKRGLIVVRLKGARDEHRVPVT 253

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
                    Y             L +  R  RGKPL    F+  +R +    G+P     
Sbjct: 254 DDFWPVYERYLKEERRTAEDCEALWIALRKGRGKPLTYAAFESSLRYIGGKAGVP--VHP 311

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI---YDQTH 318
           H  RH+ A  +L   G+L+  Q ILGH  +STT  IYT V+  +    +      +D  H
Sbjct: 312 HLFRHTLAQGVLDLTGNLKIAQEILGHAHISTTADIYTRVDPVSLVTALAAAKSSFDAAH 371


>gi|262382300|ref|ZP_06075437.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262295178|gb|EEY83109.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 408

 Score =  108 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 54/291 (18%), Positives = 120/291 (41%), Gaps = 22/291 (7%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLK 89
            + +T++ Y+   +  +  +    + K+    +R+++   +R F    +T+K     ++ 
Sbjct: 132 YADITVRRYDNCLKYLMELVKR--DYKVDDMLLREVNGELVRKFDLYLKTEKHCAQNTVI 189

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R +   K  +      +  T++    ++  +   +  + L++ +      N +       
Sbjct: 190 RYMKCFKKVINLAIANEWLTKNPFAGIKFHEVEVN-KQFLSQAEI-----NRIWQKEFRI 243

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRIVPLLP--SV 206
           + ++      ++ +Y  GL   +  +L P+++ +D    L I    +K   +  +P  S+
Sbjct: 244 ERLELVRDVFIFCVY-TGLAFIDVYNLRPEHVSEDSNGNLWIVKPREKTNNICNIPLLSI 302

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            K ILE Y   P+ ++    LP+    +           Y++++    G+  + T HT R
Sbjct: 303 PKQILEKYKDNPYCMDKGTLLPVPCNQKM--------NSYLKEIADLCGIKKNLTTHTAR 354

Query: 267 HSFA-THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           HSFA    L+N   L ++  +LGH     TQ Y  V  +     M  +  Q
Sbjct: 355 HSFASVIALANNVSLPNVAKMLGHSSTRMTQHYAKVLDQTILRDMQAVEKQ 405


>gi|170735410|ref|YP_001774524.1| integrase family protein [Burkholderia cenocepacia MC0-3]
 gi|169821448|gb|ACA96029.1| integrase family protein [Burkholderia cenocepacia MC0-3]
          Length = 580

 Score =  108 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 118/359 (32%), Gaps = 63/359 (17%)

Query: 23  QNLEIERGLS----KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
               IE  L+      T+++Y  +  + L++           Q +  L+  +  A+ +  
Sbjct: 228 DYQAIEAWLALHEGTHTVRAYRREAERLLLWAIVERR-----QPLSSLTTDDAIAYRAFL 282

Query: 79  R-----------------------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           R                          +  RS+  +L+ +++   +L  +     +    
Sbjct: 283 RHPTPAARWIGPPRPRTAPAWRPFAGALTPRSVAYALAVLRALFAWLVGQHYVVLNPFAG 342

Query: 116 MRNLKKSNSLP----RALNEKQALTLVDN-VLLHTSHETKWIDARNSAILYLLYGCGLRI 170
           +     +   P    RAL +++   +      L  +  T     R   +L   Y  GLR 
Sbjct: 343 VTVRGGATRAPFDTGRALTDREWRIVRAAADRLERTGWTAPAAERLRFVLDFGYATGLRA 402

Query: 171 SEALSLTPQNIMDDQS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLC---PFDLNLN 224
            E ++ T  +I  D      L++ GKG K   V L P  R A+                +
Sbjct: 403 QELVAATLGDITADACGALWLQVTGKGAKSGRVALPPLARDALRRALKARGLPVMRAGWH 462

Query: 225 IQLPL-------FRGIRGKPLNPGVFQRYIRQLRRY------------LGLPLSTTAHTL 265
              PL        R  R   ++    ++ + +  R                    + H L
Sbjct: 463 PATPLVTSLTAEHRAERHTGISAARLRQMLGEFFRETAERVNTRHPALAEKLRHASPHWL 522

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           RH+ ATH L  G +L  ++  L H  ++TT  Y +         +   + +  P  +Q 
Sbjct: 523 RHTHATHALDAGVELVVVRDNLRHASVATTSAYLHGEETKRARQVSAAFQR-QPRRSQH 580


>gi|321314259|ref|YP_004206546.1| integrase family protein [Bacillus subtilis BSn5]
 gi|320020533|gb|ADV95519.1| integrase family protein [Bacillus subtilis BSn5]
          Length = 399

 Score =  108 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 48/289 (16%), Positives = 90/289 (31%), Gaps = 29/289 (10%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           I    I +++  + +  ++    Q     ++    +      KY  +RK+   S      
Sbjct: 102 IAKTNIAKITTRKYQKILNDLTEQGYARNTISGVHTTAGLIFKYAIQRKLLKHSPTEGAV 161

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHET--KWIDARNSAILYLLYGCGLRISEALS 175
             KK  ++    N        +   L     T  ++    +    YLL   G+R  E  +
Sbjct: 162 VPKKRLTVEDIENNPIEEKYFEKEELEEFLLTVKEFGLDMDLERFYLLAFSGMRSGELCA 221

Query: 176 LTPQNIMDDQSTLRIQGKGDKI------------------RIVPLLPSVRKAILEYYDL- 216
           L   +I  + + +RI                         R + +   +   + EY    
Sbjct: 222 LKWTDINFETNEIRITKTIYSENNNMKEYELVPPKTAGSVRTIEVEDQIMDMLKEYQMRQ 281

Query: 217 -------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
                         +    +F    G P  P      + +L     +    T H  RH+ 
Sbjct: 282 KKRRLQSRIKPEEYHDGNFVFARENGYPFLPKNIIVRMERLLEKTSIKKHATPHIFRHTH 341

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQT 317
            + L     D+ +I   +GH  + TT  IYT+V  K   D   ++    
Sbjct: 342 ISMLTEARVDITTIMKRVGHDDMKTTMRIYTHVTEKMKEDASQKVQKTF 390


>gi|319896531|ref|YP_004134724.1| hypothetical protein HIBPF01270 [Haemophilus influenzae F3031]
 gi|317432033|emb|CBY80381.1| phage integrase [Haemophilus influenzae F3031]
          Length = 337

 Score =  108 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 96/270 (35%), Gaps = 29/270 (10%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKY 101
            +     L      +   +         +    S  + +   + ++ R  + +++ F + 
Sbjct: 87  LKNLCANLGDPPANEFNAEIFADYRKRRLDGEFSVNKNKPPKEATVNREHAYLRAVFNEL 146

Query: 102 LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
              RK T E+ +  +R  K+  +    L E+    L+       + +          I+ 
Sbjct: 147 KSLRKWTAENPLDGVRLFKERETELAFLYERDIYRLLVECDNSRNADLG-------LIVR 199

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           +    G R SEA +LT   +M  + T     K  K R VP+   +   + +       D 
Sbjct: 200 ICLATGARWSEAETLTQSQVMPYKITFT-NTKSKKNRTVPISKELFDMLPKKRGRLFNDA 258

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
             + +  +                    LR  + LP     H LRH+FA+H + NGG++ 
Sbjct: 259 YESFENAV--------------------LRAEIELPKGQLTHVLRHTFASHFMMNGGNIL 298

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            ++ ILGH  +  T  Y +    +    + 
Sbjct: 299 VLKEILGHSTIEMTMRYAHFAPSHLESAVK 328


>gi|268609765|ref|ZP_06143492.1| integrase family protein [Ruminococcus flavefaciens FD-1]
          Length = 372

 Score =  108 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 104/281 (37%), Gaps = 40/281 (14%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            + +L   +I+  I+  +  K    ++K++   + S L+Y   ++  +E+   N+   K 
Sbjct: 97  PLTKLKSDDIQHMINDLKL-KYSYSTVKKAYEAVNSCLRYALSKREVSENAADNVSLPKS 155

Query: 122 SNSLPRALN--EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
                  ++    + L L+           K I      I+  L   GLRI E L+L   
Sbjct: 156 MKKAVNDISFFSDEELGLIYKEAFKCYRNGKRIYRLAE-IIVFLVNTGLRIGECLALKWS 214

Query: 180 NIMDDQSTLRI----------------------------QGKGDKIRIVPLLPSVRKAIL 211
           +I  + +  R+                                +  R+VPL  +  +A+L
Sbjct: 215 DIDWNTNIFRVSRNIVYVKRRDTKSMLAETGYSSLEQRSTKTKNGDRVVPLNSAAIRALL 274

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
               +            +F    G  + P    R  R +     +      H+LRH+FA+
Sbjct: 275 SIRGIN------KNNSYIFSTSNGGRVYPRNIDRMFRAILNRCHI-KGRGVHSLRHTFAS 327

Query: 272 HLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMM 311
            + + G D++++  +LGH  +S T   Y ++  +     +M
Sbjct: 328 RMFAEGVDVKTVSEVLGHSDVSITYNTYIHLLKEQRIKAVM 368


>gi|217970537|ref|YP_002355771.1| integrase [Thauera sp. MZ1T]
 gi|217507864|gb|ACK54875.1| integrase family protein [Thauera sp. MZ1T]
          Length = 394

 Score =  108 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 62/358 (17%), Positives = 125/358 (34%), Gaps = 63/358 (17%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P+I +   +   + WL      R     T  SY  +  + L++      + ++  ++   
Sbjct: 35  PQISAQNDVDAVKAWLARFVETRT----TFDSYRKEAERLLLWSVTELGKPLS--SLSHE 88

Query: 67  SYTEIRAFISKRR-----------------------TQKIGDRSLKRSLSGIKSFLKYLK 103
                R F++  +                       +  +   S ++++  + +   +L 
Sbjct: 89  DLLLYRRFLADPQPVARWVMAKGRKWPRNDPAWRPFSGSLSASSQRQAIVILNTMFAWLV 148

Query: 104 KRKITTESNILNMRNLKKSNSLPR---ALNEK---QALTLVDNVLLHTSHETKWIDARNS 157
                  +  L++   ++  S PR    L+E    +    ++ +   T  E +       
Sbjct: 149 NAGYLAGNP-LSISRQRQRRSKPRITRFLDEPTWVEVKASIEAMPNETDREREHYFRV-R 206

Query: 158 AILYLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRI----VPLLPSV 206
            +  LLY CGLRI+E  + T            DD   L + GKG+K RI      L+  +
Sbjct: 207 WLFSLLYLCGLRITEVTTNTMGCFFSRRDRNGDDLWWLEVTGKGEKTRIVPATNELMMEL 266

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS------- 259
            +   EY             L L  G + + L  G     ++++       +        
Sbjct: 267 VRYRREYALAPYPVPGEPTPLLLPIGGQRRALTRGAVHLVVKEVFERAAKRVEERGDEFV 326

Query: 260 --------TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                    +AH LRH+  +++     DLR ++  LGH  ++TT +Y + +       
Sbjct: 327 SRANALRAASAHWLRHTAGSNMAGAEVDLRFVRDNLGHESITTTSLYLHGDDDERHKA 384


>gi|168213143|ref|ZP_02638768.1| site-specific recombinase, phage integrase family [Clostridium
           perfringens CPE str. F4969]
 gi|170715456|gb|EDT27638.1| site-specific recombinase, phage integrase family [Clostridium
           perfringens CPE str. F4969]
          Length = 363

 Score =  108 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 52/299 (17%), Positives = 115/299 (38%), Gaps = 29/299 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L++++  R     T  +Y+        F        +    + +LS  +I+  I K   
Sbjct: 80  YLEHIQTYR-----TFNTYKSTRAALSNF-------DLDDTKLTELSIIDIQKCIDKLTA 127

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLPRALNEKQALTLV 138
           +K+   ++KR ++  ++ LK+   +      N+  +   +K +  S  RA+++ +   L+
Sbjct: 128 RKLSPTTVKRRVTAFRTMLKFAHSQYGLPIPNLELLVLPEKKDLTSKRRAMDKHEINFLL 187

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            ++        K        +  +    G+R+ E L LT   +  + + + +  +  ++ 
Sbjct: 188 KHM--------KMKHYNYYRVCVVAANTGMRLGEVLGLTWDCVDWENAIITVNKQWKELD 239

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
                    K+   Y  +      L+    + + I    L+  V   +   L   + +  
Sbjct: 240 KGVFGFGELKSKNSYRKIPVTRSFLDTLREI-KSINKGSLDNRVIDNFDNYLSLCVNINK 298

Query: 259 ------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
                   + H  RHSFAT L+  G D ++   ILGH    T ++Y++V  +       
Sbjct: 299 CIRRNYDISMHDFRHSFATRLIHEGLDFKTTAKILGHDVEQTIRVYSHVTDEMMEKAKK 357


>gi|319788864|ref|YP_004090179.1| integrase family protein [Ruminococcus albus 7]
 gi|315450731|gb|ADU24293.1| integrase family protein [Ruminococcus albus 7]
          Length = 359

 Score =  108 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 55/264 (20%), Positives = 105/264 (39%), Gaps = 26/264 (9%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           +++   +  FI  +  + +    +   L  +K+  KY +K      +   N+   K + S
Sbjct: 103 EITSKTVYGFIQAKLDEGLSAGYVSNILVLLKTVFKYAQKEYHIL-NPFDNVIMPKSTKS 161

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
             R L +K+   L + +  + +  T          + L    GLRI E   LT Q+I   
Sbjct: 162 ETRLLTKKEQKKLKEYLKSNVNTATLG--------ISLAISMGLRIGEICGLTWQDIDFK 213

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP---- 240
             TL ++    +IR+       +  IL       F   + I   +F  ++     P    
Sbjct: 214 CRTLTVRRTVQRIRVKGEAKKTKIVILPPKSKSSFR-EIPIPTSVFAMLKNLRSTPEHYI 272

Query: 241 ----------GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
                      +      ++ + LGLP S   H+LRH+ A++ +  G D++++  +LGH 
Sbjct: 273 LSDSTEPKEPRMMYYDYVEILKELGLP-SVKFHSLRHAAASNAIEAGFDVKTLSEVLGHS 331

Query: 291 RLSTTQ-IYTNVNSKNGGDWMMEI 313
           R+  T  +Y + N       M ++
Sbjct: 332 RIEMTMNLYVHSNMDRKRKLMDKL 355


>gi|311234897|gb|ADP87751.1| integrase family protein [Desulfovibrio vulgaris RCH1]
          Length = 457

 Score =  108 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 98/258 (37%), Gaps = 40/258 (15%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRK---------ITTESNIL------NMRNLKKSNSL 125
           + +  +++   L  ++    Y ++            + ++  +       +R  +     
Sbjct: 202 RGLSAQTVLHCLKAVREVYNYARETPHPDFPERMLYSGKNPAVLSRRGHGVRLPRSDARR 261

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
            R LN+ +   L+     +    ++  D     ++ +    G+R  E + L  ++I  D 
Sbjct: 262 LRILNDAEISALLSYRGQNVVETSELHD-----MILISLDTGMRAGELVRLRTEDIDVDH 316

Query: 186 STLRIQ-------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
            T+RI         KG + RIV       ++I            +     LF G  G   
Sbjct: 317 GTIRIYSGSDAGITKGGRTRIVHAGHLFAESI------TMLRRRVGSPGLLFPGRGGAVR 370

Query: 239 NPGVFQRYIRQLRRYLGLPLSTT-------AHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           N     R +  +   LGL    T        HTLRH++AT +L  G D+ +++ +LGH  
Sbjct: 371 NTTAVSRAMAHICATLGLNADVTDDRNRIVWHTLRHTYATRMLEAGIDIYTLKELLGHSS 430

Query: 292 LSTTQIYTNVNSKNGGDW 309
           ++ T+ Y ++  +   + 
Sbjct: 431 VAVTERYLHLCDRAKRNA 448


>gi|225627141|ref|ZP_03785179.1| Tyrosine recombinase xerC [Brucella ceti str. Cudo]
 gi|225617976|gb|EEH15020.1| Tyrosine recombinase xerC [Brucella ceti str. Cudo]
          Length = 313

 Score =  108 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 104/276 (37%), Gaps = 31/276 (11%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97
           S++ + R FL  +    +E +            + + I   R +   + ++ R ++ +  
Sbjct: 62  SHKYNVRSFLGEI----DEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSK 117

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
            L+  K  K+    N+      K+     R L +++   L   +                
Sbjct: 118 LLR--KAHKMGDIFNLPEFIRQKERVGRIRFLEQEEEKRLFAAIKSRCEDS--------Y 167

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            +   L   G R+ EA+ LT  +I + + T  +  K ++ R VPL    RKA        
Sbjct: 168 RLSVFLVDTGCRLGEAIGLTWNDIQEQRVTFWV-TKSNRSRTVPLTRRARKA-------- 218

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLS 275
                  ++ P         LN   F++   + +  +GL        H LRH+ A+ L+ 
Sbjct: 219 SHIPRERLKGPF------SMLNQVRFRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVR 272

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            G D+R +Q  LGH  L  T  Y ++ + +    + 
Sbjct: 273 GGIDIRRVQMWLGHQTLQMTMRYAHLATHDLDSCVK 308


>gi|16759658|ref|NP_455275.1| DNA recombinase [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|16764086|ref|NP_459701.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29142569|ref|NP_805911.1| DNA recombinase [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|161615058|ref|YP_001589023.1| hypothetical protein SPAB_02818 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167552867|ref|ZP_02346618.1| HbiF [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
 gi|167992991|ref|ZP_02574086.1| HbiF [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168238858|ref|ZP_02663916.1| HbiF [Salmonella enterica subsp. enterica serovar Schwarzengrund
           str. SL480]
 gi|168240567|ref|ZP_02665499.1| HbiF [Salmonella enterica subsp. enterica serovar Heidelberg str.
           SL486]
 gi|168467729|ref|ZP_02701566.1| HbiF [Salmonella enterica subsp. enterica serovar Newport str.
           SL317]
 gi|168820157|ref|ZP_02832157.1| HbiF [Salmonella enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194446017|ref|YP_002039954.1| hypothetical protein SNSL254_A0776 [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194450002|ref|YP_002044748.1| DNA recombinase HbiF [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194737935|ref|YP_002113823.1| HbiF [Salmonella enterica subsp. enterica serovar Schwarzengrund
           str. CVM19633]
 gi|197265135|ref|ZP_03165209.1| HbiF [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA23]
 gi|200390568|ref|ZP_03217179.1| HbiF [Salmonella enterica subsp. enterica serovar Virchow str.
           SL491]
 gi|204929831|ref|ZP_03220852.1| HbiF [Salmonella enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|213163174|ref|ZP_03348884.1| HbiF [Salmonella enterica subsp. enterica serovar Typhi str.
           E00-7866]
 gi|213428157|ref|ZP_03360907.1| HbiF [Salmonella enterica subsp. enterica serovar Typhi str.
           E02-1180]
 gi|213582132|ref|ZP_03363958.1| HbiF [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
 gi|213852661|ref|ZP_03382193.1| HbiF [Salmonella enterica subsp. enterica serovar Typhi str. M223]
 gi|289803851|ref|ZP_06534480.1| HbiF [Salmonella enterica subsp. enterica serovar Typhi str. AG3]
 gi|289826644|ref|ZP_06545650.1| HbiF [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-3139]
 gi|25301278|pir||AH0588 probable DNA recombinase [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16419225|gb|AAL19660.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16501950|emb|CAD05178.1| probable DNA recombinase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29138200|gb|AAO69771.1| probable DNA recombinase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|161364422|gb|ABX68190.1| hypothetical protein SPAB_02818 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404680|gb|ACF64902.1| HbiF [Salmonella enterica subsp. enterica serovar Newport str.
           SL254]
 gi|194408306|gb|ACF68525.1| HbiF [Salmonella enterica subsp. enterica serovar Heidelberg str.
           SL476]
 gi|194713437|gb|ACF92658.1| HbiF [Salmonella enterica subsp. enterica serovar Schwarzengrund
           str. CVM19633]
 gi|195629209|gb|EDX48577.1| HbiF [Salmonella enterica subsp. enterica serovar Newport str.
           SL317]
 gi|197243390|gb|EDY26010.1| HbiF [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA23]
 gi|197288341|gb|EDY27722.1| HbiF [Salmonella enterica subsp. enterica serovar Schwarzengrund
           str. SL480]
 gi|199603013|gb|EDZ01559.1| HbiF [Salmonella enterica subsp. enterica serovar Virchow str.
           SL491]
 gi|204320825|gb|EDZ06026.1| HbiF [Salmonella enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205322551|gb|EDZ10390.1| HbiF [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
 gi|205328859|gb|EDZ15623.1| HbiF [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205339818|gb|EDZ26582.1| HbiF [Salmonella enterica subsp. enterica serovar Heidelberg str.
           SL486]
 gi|205343132|gb|EDZ29896.1| HbiF [Salmonella enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|261245980|emb|CBG23782.1| putative type 1 fimbriae regulatory protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267992454|gb|ACY87339.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301157308|emb|CBW16796.1| putative type 1 fimbriae regulatory protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312911743|dbj|BAJ35717.1| HbiF [Salmonella enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|321226292|gb|EFX51343.1| putative DNA recombinase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323129027|gb|ADX16457.1| DNA recombinase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|332987653|gb|AEF06636.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 188

 Score =  108 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 43/174 (24%), Positives = 68/174 (39%), Gaps = 7/174 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L +++   L+      ++ +      RN  ++ + +  G R SE L L   +I     
Sbjct: 4   KYLTQEEIEKLL------SATDRMPFPERNRCLILMAFIHGFRASELLGLRLSDIDLAGR 57

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            L I+  K       PLLP     +  +     +         LF  +R  PL+   F  
Sbjct: 58  QLYIRRLKNGFSTCHPLLPDEYNVLKSWLRARKYLEKGADGDWLFLSLRRHPLSRQQFFY 117

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            +R+  R   L ++   H LRH+    L   G D R IQ  LGH  +  T  YT
Sbjct: 118 ILREAGRLAELTIAPHPHMLRHACGYALADKGIDTRLIQDYLGHRNIQHTVRYT 171


>gi|298483595|ref|ZP_07001770.1| integrase [Bacteroides sp. D22]
 gi|298270165|gb|EFI11751.1| integrase [Bacteroides sp. D22]
          Length = 281

 Score =  108 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 44/271 (16%), Positives = 98/271 (36%), Gaps = 21/271 (7%)

Query: 51  AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           A   +  +      Q+ +  I +++   +   ++   +   ++  ++  +     + +  
Sbjct: 8   AECLQYGVADIPFTQIDFDFIESYVYYLKVNLQLSASTTNNTIKPLRKVVMRALNKGLMH 67

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
           +      R  ++     + L+  +   L+   + H S            +       GL 
Sbjct: 68  QDPFFGYR-PQRITITRKWLSMDEIERLMQTDMKHESAN------FIRDMFLFSTFTGLA 120

Query: 170 ISEALSLTPQNI----MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
             +  +L   NI       Q  +  + K      +PLL    + I +Y +     L+  +
Sbjct: 121 YVDLKNLRHDNIVWQKDGKQWIVLNRQKTGTTSYIPLLDIPLRLIEKYRNTAFAGLDGKV 180

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
                   R   +     Q  ++++ +   +    T H  RHS+AT  LS G  + +I  
Sbjct: 181 F-------RLCTIENADIQ--LKKIAKAANIEKRLTYHMARHSYATLCLSMGVPIETISQ 231

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            LGH  +STTQIY ++      + M  + ++
Sbjct: 232 TLGHRSISTTQIYADITRTKINEDMTNLAER 262


>gi|150401647|ref|YP_001325413.1| phage integrase family protein [Methanococcus aeolicus Nankai-3]
 gi|150014350|gb|ABR56801.1| phage integrase family protein [Methanococcus aeolicus Nankai-3]
          Length = 324

 Score =  108 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 59/331 (17%), Positives = 124/331 (37%), Gaps = 38/331 (11%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLS---KLTLQSYECDTRQFLIFLAFYTEEKITI 60
            +  E++  +   + + W+      R  +   ++TL++   D  +  +FL +        
Sbjct: 2   QDFEELLLIKEADKTKPWVDKFTEIRKFANIKEITLKN---DIIRLKVFLNYCF--NTLE 56

Query: 61  QTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           +   +L + +   F      ++ I   +       +  F K +  +     ++   ++  
Sbjct: 57  KEPDELEFNDFIMFFKYLNEERNISINTQDHYYKFLSVFYKVMFLK-----NSSEYVKFK 111

Query: 120 KKSNSLPRA----------LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
           +    L +           L  ++   ++  +L    +       R++ I+ L Y  G R
Sbjct: 112 EYCKELGKFKRFEVEHFDELTSEEVNEIIKQIL----NSNSATKVRDALIIRLTYDTGAR 167

Query: 170 ISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
           I E L+L  ++    +   + +  KG ++R+        KA+  Y D        N    
Sbjct: 168 IGEILNLKLKDCDFQKGIFKFRNTKGREVRLTVCAYDTLKALKHYIDYYMKSKKSN--DY 225

Query: 229 LFRGIRGKPLNP----GVFQRYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRS 282
           LF+      +       VF+R + +L     LP +   T H+LRH     LL+ G  L  
Sbjct: 226 LFQNKHNGKVGDYWIGKVFKRTVNKLVGRGTLPKNKRITLHSLRHGRVVDLLNKGYGLDI 285

Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +   +GH  + TT IY + ++      + EI
Sbjct: 286 VGDYVGHKDIRTTMIYAH-SNSRKKKLLKEI 315


>gi|126175914|ref|YP_001052063.1| phage integrase family protein [Shewanella baltica OS155]
 gi|125999119|gb|ABN63194.1| phage integrase family protein [Shewanella baltica OS155]
          Length = 451

 Score =  108 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 51/275 (18%), Positives = 112/275 (40%), Gaps = 21/275 (7%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           R  L  L            +  +++  ++A+  +    + G     R+L  ++S  K   
Sbjct: 117 RSVLPALNRRLLAHFGRYPLHMINHRMVQAWFDEISKTRKGAA--NRNLDTLQSVFKLAL 174

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           ++     +  + +R  K+   L R L+  +   L  +V L    E     A+ + IL LL
Sbjct: 175 RQGHCLTNPCIGIRQNKR-RVLNRFLSVAEMQRL--SVALDECEEVGGSIAQCADILRLL 231

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
              G R+SE   L  + +  ++  L +       +++ +  +    +  Y+     +L  
Sbjct: 232 LLTGCRLSEITFLKGEYVRGNE--LHLPDSKTGAKVLYIGQAAVDILSRYHCKANTELFP 289

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             Q            +  + Q    +LR+ +G+      H LRH+FA++ + +G  +  +
Sbjct: 290 MKQGA----------STSLVQSLWLRLRKQIGIE-DVRLHDLRHTFASYAVMDGCSIPMV 338

Query: 284 QSILGHFRLSTTQIYTNV---NSKNGGDWMMEIYD 315
            S+LGH +++ T  YT+V   + +   + +  ++ 
Sbjct: 339 ASLLGHKKVTMTLRYTHVGDDSVEQAAEVIGAVFK 373


>gi|117926143|ref|YP_866760.1| phage integrase family protein [Magnetococcus sp. MC-1]
 gi|117609899|gb|ABK45354.1| phage integrase family protein [Magnetococcus sp. MC-1]
          Length = 153

 Score =  108 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 47/142 (33%), Positives = 69/142 (48%), Gaps = 7/142 (4%)

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           +Y CGLRI+E   L   +I   +  LRI GKG+K R++PL  S    +   +        
Sbjct: 1   MYACGLRINEVRPLEVSSIDGQKQLLRIIGKGNKERLIPLPTSTLYGLRSLWREHRHPR- 59

Query: 223 LNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
                 LF        ++  V  R  +   R  GLP   T H LRHS+AT L+ N  DLR
Sbjct: 60  -----FLFPNKGGTNAVHSCVLYRTFKDALREAGLPSEITPHVLRHSYATRLMENDVDLR 114

Query: 282 SIQSILGHFRLSTTQIYTNVNS 303
           + Q ++GH  + +T IY+++  
Sbjct: 115 TTQILMGHSSIKSTLIYSHLTE 136


>gi|302537984|ref|ZP_07290326.1| predicted protein [Streptomyces sp. C]
 gi|302446879|gb|EFL18695.1| predicted protein [Streptomyces sp. C]
          Length = 369

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 59/304 (19%), Positives = 102/304 (33%), Gaps = 38/304 (12%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           L   T+  Y    R  L+              + QL++  I AF++ +     G  +L R
Sbjct: 8   LKPTTMARYRDYVRNDLV-------PAFGTLKLDQLAHRHISAFVTCQLAAGRGRTTLYR 60

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L+ + S L    ++     +        +      R    ++A   +            
Sbjct: 61  CLATLSSALGDAVRQHRLPHNPASPPVLRRPPAPERRIWTAQEAARFLTYCHQADPDMAD 120

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----------------GKG 194
                   +   L G G+R  EAL L   ++   ++ L ++                   
Sbjct: 121 --------LFEFLIGTGMRKGEALGLHWDDVYLGEAVLYVRCTLSAIDNNRLVITAPKTR 172

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQL 250
                V + P V  A+  +          +   P    +F    G+PL P      + +L
Sbjct: 173 SSRGWVAISPRVATALRHH-ARTTRPTRGDPDDPFAGLVFCRSDGRPLGPHQVLDRLHEL 231

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDW 309
               G+P   T H LRH  AT  +S G  L  +   L H  LSTT  IY+++  +   + 
Sbjct: 232 SEEAGVPR-ITVHDLRHLAATITISAGVPLTVVSKTLRHSTLSTTANIYSHLTRQAAREA 290

Query: 310 MMEI 313
           +  I
Sbjct: 291 VDTI 294


>gi|229590505|ref|YP_002872624.1| putative phage integrase/recombinase [Pseudomonas fluorescens
           SBW25]
 gi|229362371|emb|CAY49273.1| putative phage integrase/recombinase [Pseudomonas fluorescens
           SBW25]
          Length = 304

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 56/275 (20%), Positives = 111/275 (40%), Gaps = 15/275 (5%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR--QLSYTEIRAFISKRRTQKIGDRSLK 89
           S+LT++    D    L F      E I ++ I    L    + A ++  R       +  
Sbjct: 20  SQLTMRYVLQDAADRLGF------EDINLEDIDWHLLQPEHVIALVAALREDGYAPNTSS 73

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             ++ ++  +    +  + ++ ++L MR +K +             +L+  ++   + + 
Sbjct: 74  LYVNAVRGVMNEAWRLNLISQEHLLRMRTVKATPGSRLGQGRNLRRSLIREMMEVCAADP 133

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           +    R++A++ +LYG G+R SE+++L    I  ++ +LR+ GKG+K  I          
Sbjct: 134 RPQGLRDAAVIGILYGSGMRKSESVNLDLAQINFEERSLRVIGKGNKELIKYAPDWAFAK 193

Query: 210 ILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNP-GVFQRYIRQLRRYLG--LPLSTTAH 263
           +  +       L    Q   F   R  RG  +    + +  I  + R  G  + +    H
Sbjct: 194 LQAWLTFRREQLKDGEQDDNFLFNRIRRGSHITRERITKHAIYYIARQRGEQVGVKIMPH 253

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             R SF T ++    DL   Q +  H  + TT  Y
Sbjct: 254 DFRRSFITRVIEE-HDLSIAQKLAHHTNIQTTASY 287


>gi|227327444|ref|ZP_03831468.1| phage integrase family protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 337

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 59/319 (18%), Positives = 112/319 (35%), Gaps = 43/319 (13%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDT--------RQFLIFLAFYTEEKIT 59
           E ++FE    +  W +     R L +L    Y            RQ  +  A+    +  
Sbjct: 34  EAIAFEQYAAQNPWQEEKGDRRTLKELVDAWYSAHGITLKDGLKRQSAMHHAYECMGEPL 93

Query: 60  IQTIRQLSYTEIRA------FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESN 112
            +      ++  R       +    R +++  R+L   L+  ++    L +      E+ 
Sbjct: 94  ARDFEAQMFSRYREKRLKGGYARSNRVKEVTPRTLNLELAYFRAMFNELTRLGEWKGENP 153

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           + NMR  +   +    L + Q    +     H             A++ +    G R SE
Sbjct: 154 LKNMRPFRTEEAEMAYLTQDQIALFLSECQRHE-------HPHLQAVVKICLSTGARWSE 206

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
           A +L    +   + T     KG + R VP+  ++ +++ E       D     +  L R 
Sbjct: 207 AENLRRSQLSPYKITFT-YTKGRRNRAVPISKALYESLPENKGRLFTDCYGAFRSALERT 265

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                                + LP     H LRH+FA+H +  GG++  +Q +LGH  +
Sbjct: 266 G--------------------IELPAGQLTHVLRHTFASHFMMKGGNILVLQRVLGHTDI 305

Query: 293 STTQIYTNVNSKNGGDWMM 311
             T  Y +   ++  D + 
Sbjct: 306 KMTMRYAHFAPEHLEDALR 324


>gi|224368897|ref|YP_002603059.1| hypothetical protein HRM2_17930 [Desulfobacterium autotrophicum
           HRM2]
 gi|223691614|gb|ACN14897.1| hypothetical protein HRM2_17930 [Desulfobacterium autotrophicum
           HRM2]
          Length = 365

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 102/260 (39%), Gaps = 23/260 (8%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ------KIGDRSLKRSLSGIKSFLKYLK 103
              +    +    + +++ + ++  ++   T+           ++K+ L  IK    +  
Sbjct: 105 WELHISAHLKGMKMDKITPSHVQDILNHMATKDTPKGGHYAPATIKQVLVLIKRVFNWSM 164

Query: 104 KRKITTE-SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
           ++ +    +   ++      N +   L++    +L+       S    W + R   ++  
Sbjct: 165 QQGLYQGGNPCKSVEAPMFDNRINNPLDKSGLRSLM-------SVLDTWNNERAILVIKF 217

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
               G R  E LSLT  ++  +   L +Q    K +    LP           +      
Sbjct: 218 ALYSGKRKGEVLSLTWDSVDFENHLLTLQAMNTKSKKAQSLP----LNNHCMTILERCRK 273

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG-GDLR 281
           L +   +F    G   N   F    +++R+  G+  S   H LRH++A++L S+G  D+ 
Sbjct: 274 LKVSDYVFPSTLGNYYN--TFDETWKRIRKRAGI--SIRFHDLRHTYASYLASSGKVDIY 329

Query: 282 SIQSILGHFRLSTTQIYTNV 301
           +++ +LGH  +  TQ Y ++
Sbjct: 330 TLKELLGHSTIEMTQRYAHL 349


>gi|218667294|ref|YP_002425983.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218519507|gb|ACK80093.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 331

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 71/315 (22%), Positives = 118/315 (37%), Gaps = 50/315 (15%)

Query: 2   EGNNLPEIV-SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
               LPE      L      +L++LE  R  S  T         +   +LA YT  +   
Sbjct: 48  SARPLPERAGDPPLAAVMPLYLKHLEHLR--SPETA---RFHAARITPWLAQYTASEAPK 102

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
                       A I +  T      ++ RSL  +K  L    ++++T E+    ++ L 
Sbjct: 103 CA----------AMIIRDMTGAYAPATINRSLGALKKALTLAWEQELTPENYGARIKRLP 152

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           + N     L  +Q   L        SH +  +     A +++    G R  E   L  ++
Sbjct: 153 EHNERHIYLTLEQVNEL-------ASHASDPVA----AAIWIALFTGCRRGEITKLKAED 201

Query: 181 IMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           + +   T+R    K  K R VP++  +R  +                +PL       P+N
Sbjct: 202 VGETTITIRAGNTKTLKTRTVPIIGPMRLWL--------------PFIPL-------PIN 240

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               +   R+ R   GLP     H LRHS A+ LL++G DL +I  ILGH     T+ Y 
Sbjct: 241 AEGLKSGFRRAREKAGLP-HLHFHDLRHSCASILLASGADLYTISRILGHSSTKMTERYA 299

Query: 300 NVNSKNGGDWMMEIY 314
           ++ +      +   +
Sbjct: 300 HLQTDAQSIALERAF 314


>gi|189468256|ref|ZP_03017041.1| hypothetical protein BACINT_04652 [Bacteroides intestinalis DSM
           17393]
 gi|189436520|gb|EDV05505.1| hypothetical protein BACINT_04652 [Bacteroides intestinalis DSM
           17393]
          Length = 398

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 109/291 (37%), Gaps = 22/291 (7%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GL + T +++         F            T   L++  + +F    +++     ++ 
Sbjct: 123 GLKESTKRNHLSTLALLQDFKKNV--------TFSDLTFEFVSSFEYFLQSKGYHTNTIA 174

Query: 90  RSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           + +  +K  +     ++    +        +K   +    L+ ++   L    L      
Sbjct: 175 KHMKHLKRHINVAINKEYMDIQKYAFRKYKIKTVENGHTHLSPEELEKL--ETLQLKGRY 232

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRIVPLLPSVR 207
           TK+    + A L+  Y  G+R S+ +++ P NI+   Q T  I         V L   + 
Sbjct: 233 TKYQKTLD-AFLFCCYA-GMRYSDFVNMKPDNIVEMHQETWLIYKSIKTGTEVRLPLYLL 290

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
            +      L  +  NL     L               + +  + R  G+    + HT RH
Sbjct: 291 FSGKGILILNKYQANLQDFFHLRDN--------SNVNKELIIIARLAGVAKKVSFHTARH 342

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + AT L+ NG ++ ++Q +LGH  + TTQIYTNV        + + +   H
Sbjct: 343 TNATLLIYNGVNITTVQKLLGHKSVKTTQIYTNVMDATIISDLEKNHSSVH 393


>gi|291544956|emb|CBL18065.1| Site-specific recombinase XerD [Ruminococcus sp. 18P13]
          Length = 441

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 61/317 (19%), Positives = 122/317 (38%), Gaps = 45/317 (14%)

Query: 17  ERQNWLQN-LEIER-GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           E   +L   LE  +  L++ + QSY      ++  +  Y +E+     +  L+  +++ F
Sbjct: 100 EFTAFLDYWLETIKPTLARTSHQSYTR----YITRIKNYFDERYPHLLLGNLTALQLQQF 155

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
            + +    +   S+K   + I   LKY  K  +   +    +   K         N+ + 
Sbjct: 156 YNDKYNSGLSGNSVKHYHANIHKALKYAVKMDMLDINVADKVELPKIQKFEANFYNKDEL 215

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK- 193
             L +           +   R   ++++    GLR SE + L   ++  ++  L ++ K 
Sbjct: 216 EQLFEV----------FKGDRLELVVHIAAYYGLRKSEIIGLKWDSVNFEEKKLTVRRKV 265

Query: 194 -------------------GDKIRIVPLLPSVRKAILE-------YYDLCPFDLNLNIQL 227
                                 +R  PL+P + + ++E       Y  L   D +     
Sbjct: 266 SSTYGSGKEMIFVENQLKTESSVRTFPLIPHIEQMLIERKTLEEYYSKLLGKDFDREYDG 325

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
            + R   GK + P     + + + +   L      H LRHS A+ LL+NG  +++IQ  L
Sbjct: 326 FVCRDNFGKLITPNFVTSHFKYIIQKNKL-KHIRFHDLRHSCASLLLANGVSMKAIQEWL 384

Query: 288 GHFRLSTTQ-IYTNVNS 303
           GH   + T   Y++++ 
Sbjct: 385 GHSTFNVTANFYSHLDF 401


>gi|323485863|ref|ZP_08091198.1| hypothetical protein HMPREF9474_02949 [Clostridium symbiosum
           WAL-14163]
 gi|323400851|gb|EGA93214.1| hypothetical protein HMPREF9474_02949 [Clostridium symbiosum
           WAL-14163]
          Length = 410

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 62/331 (18%), Positives = 120/331 (36%), Gaps = 60/331 (18%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           L   T  +Y        ++  +  EE      + Q+  ++I AF +K         SL+ 
Sbjct: 85  LKPSTRANY------LYLWDFYVKEEPFANMPLPQIHRSDILAFYTKLLKHGFAINSLES 138

Query: 91  SLSGIKSFLKYLKKRKITTESNILNM-RNLKKSNSLPR-----ALNEKQALTLVDNVLLH 144
             + +   L+         ++    + R LK   S P+     AL + Q    +   +  
Sbjct: 139 INTIVHPTLEMAVDDDYIRKNPSKGIYRKLKTDGSAPKPKRRIALTKTQQQNFLR-FIAK 197

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG------------ 192
           +   + W+      I+ +L G G+R++E   +T  +I   ++T+ +              
Sbjct: 198 SPTYSHWLP-----IMTVLLGTGMRVAECTGITKSDINLSENTISVNHNLIYRVIDGKAG 252

Query: 193 --------KGDKIRIVPLLPSVRKAI------LEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
                   +     I  L P V + +      ++        +   +   +FR   G  +
Sbjct: 253 FHITTPKTESGTRIIPILYPEVAEQLRLQIETIDALYPDDQLVLGGVHGFVFRNRTGSFM 312

Query: 239 NPGVFQRYIRQLR---------------RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
           +     R I ++                R   L    + H+LRH+F T L  +  D++ I
Sbjct: 313 SAHNINRAIERISVTYNMEEMDQAELEDREPDLLPHFSVHSLRHTFCTRLCESTNDVKFI 372

Query: 284 QSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
           Q ++GH   STT  IYT++  +N  +    I
Sbjct: 373 QQVMGHADFSTTMDIYTHITQENMQEKAKNI 403


>gi|237718794|ref|ZP_04549275.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229451926|gb|EEO57717.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 407

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 114/301 (37%), Gaps = 27/301 (8%)

Query: 20  NWLQNLE-IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           N+L   +      +K  ++  +    +F  FL               ++   +  F++  
Sbjct: 122 NFLDYFQAYINSYTKKDIRMVQIALSRFKDFLKEQYPMNEFSIKPELITKEMMEQFVAYL 181

Query: 79  RTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQAL 135
           +++ +G   +S+ +     K  ++Y     +  +    ++     S  L +  L+ ++  
Sbjct: 182 QSRSVGEGAKSIYQRF---KKVIRYAIDHDVMLKDPCKSVTCKVDSQMLRKDVLSPEEIQ 238

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--GK 193
            L         H          A ++ LY CGLR  +   LT +N+      L+ +    
Sbjct: 239 KL------AACHYDNENPNVRRAFIFCLY-CGLRFCDVKDLTYKNVDYANRLLKFEQSKT 291

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
                   ++  +   +L      P D N L   LP +              + +++  +
Sbjct: 292 KGHSASSGVVIPLNDGLLSIIGEAPADKNCLIFDLPTYESCC----------KSVKRWVK 341

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    + H  RHSFA ++L+NG +++++ S+LGH  L  T+ YT    K   + +  
Sbjct: 342 RAGIDKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLKEEAINS 401

Query: 313 I 313
           +
Sbjct: 402 L 402


>gi|240147142|ref|ZP_04745743.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
 gi|257200666|gb|EEU98950.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
          Length = 413

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 120/343 (34%), Gaps = 63/343 (18%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-R 79
           + + +  +  L + T+++Y+    +F+             + I  + Y+++  F     +
Sbjct: 77  FDRYISTKAELRETTMRNYKYMYDRFIR-------GGFGKKKIAAVKYSDVLQFYQHLLK 129

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-----RNLKKSNSLPRALNEKQA 134
            +++   +L+   + +    +   +  I   +    +     +   K++ +  AL  +Q 
Sbjct: 130 EKEMQINTLETIHTVLHPTFQLAVRDNIIRVNPSDGVMAQIKKQPGKNHGVRHALTVEQQ 189

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-- 192
              +  +      +        ++    L G G RI EA+ +  ++I  ++ T+ I    
Sbjct: 190 RAFIRYI------DESPTFYHWASFFKFLLGTGCRIGEAIGIRWEDIDFEKRTISINHSV 243

Query: 193 ---------------------KGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQ 226
                                    IR +P++ +V  A+               +   ++
Sbjct: 244 VYYSREFKEHPICSFAVSLPKTEAGIRTIPMMDTVYDALQMELDDQKEHGFNETVIDGMK 303

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLG---------------LPLSTTAHTLRHSFAT 271
             +F    G   NP    R I+++                    +    + H LRH+F +
Sbjct: 304 GFIFMNRFGNIHNPQAVNRAIKRIYEAHNAEEVVKAAKQHREPVIIPHFSCHHLRHTFCS 363

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
               N  +L+ IQSI+GH  + TT  IY  V      + +  +
Sbjct: 364 RFCENETNLKVIQSIMGHANIETTMDIYAEVTDTKKQEAIQNL 406


>gi|228955380|ref|ZP_04117385.1| Integrase (Phage-related protein) [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228804172|gb|EEM50786.1| Integrase (Phage-related protein) [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 383

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 54/297 (18%), Positives = 115/297 (38%), Gaps = 33/297 (11%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           +  L  +    E  I ++ ++ L+    + F+++  ++K    ++K+  + +K+ +KY  
Sbjct: 88  KNLLQSVKLVEEHFIGVR-MKDLNRVLYQNFLNEL-SKKRAKMTVKKKHNCVKACIKYAI 145

Query: 104 KRKITTESNILNM----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           +  I              N  KS  L + +N+++   +VD +  + + +       +  I
Sbjct: 146 EDGILHRDPTYKAIIHGENETKSEEL-KFINQEEMKNIVDELRANLTPQ-----YISRYI 199

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP--------------- 204
           +      G R  E + +T   I  ++ T+ I    D                        
Sbjct: 200 ILFAIATGARFGEIMGMTWDCIDLEERTITINKTWDYRDKNDFGNTKNYQSVRTITIDQE 259

Query: 205 --SVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
             S+ K + ++         L     L F   + + +      + ++++     +    T
Sbjct: 260 TVSMLKDLQKHQKEHALKTGLRNTKNLCFINNQMEVITNNAVNKVLKKICARCNV-KPIT 318

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQT 317
            H+LRH+ A+ LL NG +++ I   LGH  +  T Q Y++V  +        I DQT
Sbjct: 319 CHSLRHTHASILLYNGVNIKYISRRLGHKDIVITLQTYSHVLDEMEQKE-SRIVDQT 374


>gi|255037949|ref|YP_003088570.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254950705|gb|ACT95405.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 406

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 57/287 (19%), Positives = 106/287 (36%), Gaps = 24/287 (8%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSLK 89
            + LTL+ Y+        F+ +  ++      I+ L++  I  F    R+ +     S  
Sbjct: 129 FAPLTLKRYKTAKEHTASFIKWKYKKD--DMEIKDLNFEFITEFNFWLRSARGCNHNSAI 186

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           + +S +K  +      K   +      +  KK   +   L+  +   L + V      E 
Sbjct: 187 KYMSNLKKVVLICVNNKWLKKDPFQGFKLTKKEV-VKNPLSRDELKRLTEKVF-----EV 240

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKGDKIRIVPLLPS 205
           + I      I       GL   +   L   +    +  +      + K D    +PLLP+
Sbjct: 241 ERISQV-RDIFLFCCYTGLAYVDVKQLKTTDIVVGMDGEPWIDTTRQKTDAPTRIPLLPT 299

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
               I +Y +      N  + LP+        L+      Y++++    G+  + T H  
Sbjct: 300 ALDIIEKYKEHPQCC-NKGVVLPV--------LSNQKMNAYLKEIANLCGISKTLTFHIA 350

Query: 266 RHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           RH+FAT + LSN   + ++  +LGH  L  T IY  +      + M 
Sbjct: 351 RHTFATTVTLSNKVPIETVSKMLGHRSLKQTMIYAKILDVKISEDMK 397


>gi|194429446|ref|ZP_03061969.1| integrase [Escherichia coli B171]
 gi|194432824|ref|ZP_03065108.1| integrase [Shigella dysenteriae 1012]
 gi|194412507|gb|EDX28806.1| integrase [Escherichia coli B171]
 gi|194418812|gb|EDX34897.1| integrase [Shigella dysenteriae 1012]
 gi|195183060|dbj|BAG66620.1| putative integrase [Escherichia coli O111:H-]
 gi|332090165|gb|EGI95264.1| integrase [Shigella dysenteriae 155-74]
          Length = 334

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 98/250 (39%), Gaps = 36/250 (14%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSN 123
            L   +I A+ S++  + +   S  R ++ +      LKK  +   E  +  +  L  S 
Sbjct: 101 DLDKLKIIAWRSQKIAEGLKPSSANRYMNRLSGMFTVLKKIGLWDAEHPVRGISILYVSP 160

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
                L++K+   L+D            ++     +  L    G R SEA  L  + I+ 
Sbjct: 161 REMAFLSQKEVALLLDT-----------LEGDYWRVALLCLSTGARWSEACKLRGEQIVH 209

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           ++ T  ++ K  + R VP+  +V +AI        F++                      
Sbjct: 210 NRVTF-LETKNGRKRTVPISQAVCEAIKTRETGGLFEVK--------------------- 247

Query: 244 QRYIRQLRRYL--GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            R      + +   LP    AH LRH+FA+H + NGG++ ++Q ILGH  +  T  Y + 
Sbjct: 248 YREFCLALKRVKPDLPKGQAAHVLRHTFASHFVMNGGNIIALQKILGHATIQQTMAYAHF 307

Query: 302 NSKNGGDWMM 311
                 D + 
Sbjct: 308 APDYLQDAVA 317


>gi|298241371|ref|ZP_06965178.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297554425|gb|EFH88289.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 320

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 59/293 (20%), Positives = 101/293 (34%), Gaps = 29/293 (9%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T   Y    RQF  ++A   +EK        L+   I  ++    +Q       KR  S 
Sbjct: 35  TRAVYMSILRQFTQWVAERAKEKEGF-HPDHLTAPVIERYLFDLSSQGYSYAHCKRVKSV 93

Query: 95  IKSFLKYLKKR-KITTESNILNMRNLKK---SNSLPRALNEKQALTLVDNVLLHTSHETK 150
           I  F ++     ++  ++    ++  +      + PR L+ +Q   L         +  K
Sbjct: 94  ITHFCQWFVDEQRMLPQNPARGVKLARSSASEPTPPRTLSPQQRSIL--------QNLVK 145

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRK 208
             D R  A+  L Y  G R+++   L  ++         L +     K+R + L+   R+
Sbjct: 146 QGDLRGQALFALGYWAGCRVTDLTHLLMEHTHVGGKSGWLHLGEPSSKVRDIDLVNEARR 205

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-----GLPLSTTAH 263
           ++  Y      D         F   R   L+      + R L++        +    + H
Sbjct: 206 SLYAYLQKRARD---EPSPYTFPSQRSAQLSEAGLHHWFRALKQQATPEEYAVIADISFH 262

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFR------LSTTQIYTNVNSKNGGDWM 310
            LR  FA   LS G  L  +   LGH        L TT  YT        + +
Sbjct: 263 DLRDDFAHRALSAGWTLEEVAYYLGHVTLRGTPALQTTLRYTQTTRAQVKEKL 315


>gi|206601289|gb|ACI16368.1| class 1 integrase [Enterobacter aerogenes]
 gi|256532076|gb|ACU81184.1| class 1 integrase [Escherichia coli]
          Length = 232

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 91/218 (41%), Gaps = 28/218 (12%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
             T+ ++ GKG K R + L  S+  ++ E         
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWW 199


>gi|293372055|ref|ZP_06618451.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|19068096|gb|AAL29907.1| putative integrase [Bacteroides fragilis]
 gi|292632989|gb|EFF51573.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 407

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 51/300 (17%), Positives = 112/300 (37%), Gaps = 25/300 (8%)

Query: 20  NWLQNLE-IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           N+L   +      +K  ++  +    +F  FL               ++   +  F++  
Sbjct: 122 NFLDYFQAYINSYTKKDIRMVQIALSRFKDFLKEQYPMNEFSIKPELITKEMMEQFVAYL 181

Query: 79  RTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQAL 135
           +++ +G   +S+ +     K  ++Y     +  +    ++     S  L +  L+ ++  
Sbjct: 182 QSRSVGEGAKSIYQRF---KKVIRYAIDHDVMLKDPCKSVTCKVDSQMLRKDVLSPEEIQ 238

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--GK 193
            L         H          A ++ LY CGLR  +   LT +N+      L+ +    
Sbjct: 239 KL------AACHYDNENPNVRRAFIFCLY-CGLRFCDVKDLTYKNVDYANRLLKFEQSKT 291

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
                   ++  +   +L      P D N      L   +           + +++  + 
Sbjct: 292 KGHSASSGVVIPLNDGLLSIIGEAPVDKNC-----LIFNLP----TYESCCKSVKRWVKR 342

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    + H  RHSFA ++L+NG +++++ S+LGH  L  T+ YT    K   + +  +
Sbjct: 343 AGIDKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLKEEAINSL 402


>gi|330880014|gb|EGH14163.1| Orf28 [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 183

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 72/165 (43%), Gaps = 9/165 (5%)

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIR 198
            LL           R+ AIL +L   GLR  EA  L   ++ + +    LR+ GKG KIR
Sbjct: 4   QLLDAPDTETLKGLRDRAILAVLLYHGLRREEAAQLKTGDLQERRGIKHLRVHGKGSKIR 63

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYL 254
            +PL P   + I  Y +            PLFR +RG      +        +    +  
Sbjct: 64  FLPLHPVAAERIYAYLEQDVERDAAPG--PLFRSLRGTTTGAGITANGIYTVVEAYAKKA 121

Query: 255 GLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           G+ +     H LR + AT+ L +  D+  +Q  LGH  +STT++Y
Sbjct: 122 GIVVEHLGVHGLRATAATNALEHDADIAKVQMWLGHANISTTRLY 166


>gi|283795776|ref|ZP_06344929.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
 gi|291076407|gb|EFE13771.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
          Length = 344

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 62/331 (18%), Positives = 119/331 (35%), Gaps = 60/331 (18%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           L   T  +Y        ++  +  EE      + Q+  ++I AF +K         SL+ 
Sbjct: 19  LKPSTRANY------LYLWDFYVKEEPFANMPLPQIHRSDILAFYTKLLKHGFAINSLES 72

Query: 91  SLSGIKSFLKYLKKRKITTESNILNM-RNLKKSNSLPR-----ALNEKQALTLVDNVLLH 144
             + +   L+         ++    + R LK   S P+     AL + Q    +   +  
Sbjct: 73  INTIVHPTLEMAVDDDYIRKNPSKGIYRKLKTDGSAPKPKRRIALTKTQQQNFLR-FIAK 131

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG------------ 192
           +   + W+      I+ +L G G+R++E   +T  +I   ++T+ +              
Sbjct: 132 SPTYSHWLP-----IMTVLLGTGMRVAECTGITKSDINLSENTISVNHNLIYRVIDGKAG 186

Query: 193 --------KGDKIRIVPLLPSVRKAI------LEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
                   +     I  L P V + +      ++        +   +   +FR   G  +
Sbjct: 187 FHITTPKTESGTRIIPILYPEVAEQLRLQIETIDALYPDDQLVLGGVHGFVFRNRTGSFM 246

Query: 239 NPGVFQRYIRQLR---------------RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
           +     R I ++                R   L    + H LRH+F T L  +  D++ I
Sbjct: 247 SAHNINRAIERISVTYNMEEMDQAELEDREPDLLPHFSVHNLRHTFCTRLCESTNDVKFI 306

Query: 284 QSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
           Q ++GH   STT  IYT++  +N  +    I
Sbjct: 307 QQVMGHADFSTTMDIYTHITQENMQEKAKNI 337


>gi|253565833|ref|ZP_04843287.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251944937|gb|EES85375.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 408

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 55/291 (18%), Positives = 120/291 (41%), Gaps = 22/291 (7%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLK 89
            + +T++ Y+   +  +  +    + K+    +R+++   +R F    +T+K     ++ 
Sbjct: 132 YADITVRRYDNCLKYLMELVKR--DYKVDDMLLREVNGELVRKFDLYLKTEKHCAQNTVI 189

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R +   K  +      +  T++    ++  +   +  + L++ +      N +       
Sbjct: 190 RYMKCFKKVINLAIANEWLTKNPFAGIKFHEVEVN-KQFLSQAEI-----NRIWQKEFRI 243

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRIVPLLP--SV 206
           + ++      ++ +Y  GL   +  +L P++I +D    L I    +K   +  +P  S+
Sbjct: 244 ERLELVRDVFIFCVY-TGLAFIDVYNLRPEHISEDSNGNLWIVKPREKTNNLCNIPLLSI 302

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            K ILE Y   P+ ++    LP+    +           Y++++    G+  + T HT R
Sbjct: 303 SKQILEKYKDNPYCMDKGTLLPVPCNQKM--------NSYLKEIADLCGIKKNLTTHTAR 354

Query: 267 HSFA-THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           HSFA    L+N   L ++  +LGH     TQ Y  V  +     M  +  Q
Sbjct: 355 HSFASVIALANNVSLPNVAKMLGHSSTRMTQHYAKVLDQTILRDMQAVEKQ 405


>gi|312887835|ref|ZP_07747422.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311299654|gb|EFQ76736.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 410

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 62/291 (21%), Positives = 116/291 (39%), Gaps = 30/291 (10%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-------IGDRS 87
           TL+ Y    R  + FL    +   +   + QL +  ++ F    R  K       + +  
Sbjct: 129 TLRHYYVTQRYLVKFLE--DQHHASDIYLHQLDFKFVKDFEVYLRNHKPKDHQKPLNNNG 186

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           + + +  +K  +      +  T       + LK        L+EK+   +    L     
Sbjct: 187 VMKHIIRLKKMVNLALNLQWITNDPFATYK-LKILKVNREQLSEKELADMEKKKL----- 240

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLR-IQGKGDKIRIVPLL 203
             + +D      ++  Y  GL   + ++LTP +I+   D +  +R  + K      VPLL
Sbjct: 241 SIERLDMVRDMFVFCCY-TGLSYVDMINLTPGHIIAGSDGERWIRTCREKTLIPVNVPLL 299

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           P     + +Y          +    L  G     ++      Y++++    G+  + T H
Sbjct: 300 PQALTILDKY---------KDNIRSLSNGRVFPTVSNQKVNSYLKEIADLCGITKNVTFH 350

Query: 264 TLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             RH+FAT + LSNG  + ++  ILGH +++TTQIY  V  +   + M  +
Sbjct: 351 IARHTFATTVTLSNGVPIETVSKILGHTKITTTQIYAKVVERKLKEDMNAL 401


>gi|299141859|ref|ZP_07034994.1| mobilizable transposon protein, int protein [Prevotella oris C735]
 gi|298576710|gb|EFI48581.1| mobilizable transposon protein, int protein [Prevotella oris C735]
          Length = 418

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 55/304 (18%), Positives = 111/304 (36%), Gaps = 25/304 (8%)

Query: 16  KERQNWLQNL-EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           + +QN+++   ++     + +  S + +  +  + L  +  + +    I      + + F
Sbjct: 125 RLQQNFIKYFDKVADKRHRNSSVSIQTNWERVHVLLKMFAGDTLLFSQIDNRLAEDFKYF 184

Query: 75  ISKR-----RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +        +   I   +     S  K+ LK        T      ++ +++  S    L
Sbjct: 185 LLSAPCGGSKKGTISRNTASTYFSIFKAALKQAFIDGYLTIDLSAKIKGIQEQESRREYL 244

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              +      N L +T  E   +  + +A+   L   GLR  +   L    I  + +  +
Sbjct: 245 TLDEL-----NKLANTPCERDVL--KRAALFSAL--TGLRHCDIQKLKWNEIAIEGNQAK 295

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           +     K + V  +P   +A     +    +  +   LP          NP    R +R 
Sbjct: 296 LLFTQKKTKGVEYMPISEQAFKLCGEPRQPEQLVFEGLP----------NPSWISRSLRA 345

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+    + H  RH+FAT  L+NG D+ ++  +LGH  + TTQ+Y  V  +     
Sbjct: 346 WIEKAGIQKHLSFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKVVDEKKNKA 405

Query: 310 MMEI 313
              I
Sbjct: 406 ANAI 409


>gi|237815093|ref|ZP_04594091.1| Tyrosine recombinase xerC [Brucella abortus str. 2308 A]
 gi|237789930|gb|EEP64140.1| Tyrosine recombinase xerC [Brucella abortus str. 2308 A]
          Length = 313

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 104/276 (37%), Gaps = 31/276 (11%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97
           S++ + R FL  +    +E +            + + I   R +   + ++ R ++ +  
Sbjct: 62  SHKYNVRSFLGEI----DEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSK 117

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
            L+  K  K+    N+      K+     R L +++   L   +                
Sbjct: 118 LLR--KAHKMGDIFNLPEFIRQKERVGRIRFLEQEEEKRLFAAIKSRCEDS--------Y 167

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            +   L   G R+ EA+ LT  +I + + T  +  K ++ R VPL    RKA        
Sbjct: 168 RLSVFLVDTGCRLGEAIGLTWNDIQEQRVTFWV-TKSNRSRTVPLTRRARKA-------- 218

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLS 275
                  ++ P         LN   F++   + +  +GL        H LRH+ A+ L+ 
Sbjct: 219 SHIPRERLKGPF------SMLNQVRFRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVR 272

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            G D+R +Q  LGH  L  T  Y ++ + +    + 
Sbjct: 273 GGIDIRRVQMWLGHQTLQMTMRYAHLATHDLDSCVK 308


>gi|330504101|ref|YP_004380970.1| phage integrase family protein [Pseudomonas mendocina NK-01]
 gi|328918387|gb|AEB59218.1| phage integrase family protein [Pseudomonas mendocina NK-01]
          Length = 339

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 102/269 (37%), Gaps = 30/269 (11%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           R+ L  +A      + I+    ++  E   + ++        ++L   L  ++S    L 
Sbjct: 82  RRLLDTMAKELGNPVAIK----MTGNEYAEYRTQAIKAGANPKTLNNRLGYLRSVFNVLH 137

Query: 104 KRKITT-ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
           +       + +  +R L+        L + Q  TL        +          + +  +
Sbjct: 138 QLGEIDYANPLARVRPLRLQEKELAYLTDSQIETLF------ATIHRYCRTPHVAMVAAI 191

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
               G R  EA +LTP + + +Q    +  KG ++R +P+   + + I  ++       N
Sbjct: 192 CLATGARWGEAQALTP-DRVRNQLVTFVNTKGKRVRSIPIALELEQQIHRHFKQHGQFSN 250

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
                    G    P                  +P   ++H LRH+FA+H + NGG++ +
Sbjct: 251 CLNSFDKALGESRLP------------------VPAGQSSHVLRHTFASHFVMNGGNILT 292

Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +Q ILGH  L+ T  Y ++   +  D + 
Sbjct: 293 LQKILGHTTLAMTMRYAHLAPDHLQDVVR 321


>gi|298484293|ref|ZP_07002456.1| integrase [Bacteroides sp. D22]
 gi|298269540|gb|EFI11138.1| integrase [Bacteroides sp. D22]
          Length = 431

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 113/295 (38%), Gaps = 29/295 (9%)

Query: 27  IERG-LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIG 84
           +E+G  +K T   Y      F  FL  + ++K T    ++L+   I  F    R  + + 
Sbjct: 126 VEKGQRAKSTYNKYLAVYNHFKTFL--WEKKKRTDMAYKELTKEIITDFDKYLRVEKGLS 183

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +L      + S      +R I          +L+   +    L E++  TL + V + 
Sbjct: 184 ANTLWIYTMPLLSLTDKAWRRGIVRTDPFGEY-SLEMQETDRGYLTEEELRTLANAVFV- 241

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ-----NIMDDQSTLRIQGKGDKIRI 199
                K   +    +       GL   +  +LT       +   ++  +  + K      
Sbjct: 242 -----KKQTSLVRDMFLFGCFTGLSYIDIKTLTHDKIQRMDFDGEEWIITRRTKTRVSSN 296

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPL+   ++ I  Y  L   DL       +F        +  V  R+++Q+ +  G+   
Sbjct: 297 VPLMEIAKELIERYKGLAGGDL-------VFPMP-----SNSVCNRHLKQIAKACGIHKE 344

Query: 260 TTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              H  RH+FAT   L NGG + ++  ILGH  +STTQIY  V ++        I
Sbjct: 345 IGFHLSRHTFATTIYLCNGGTIEALSKILGHKHISTTQIYAEVTNRMVSSDFRAI 399


>gi|107099659|ref|ZP_01363577.1| hypothetical protein PaerPA_01000677 [Pseudomonas aeruginosa PACS2]
          Length = 289

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 94/238 (39%), Gaps = 32/238 (13%)

Query: 77  KRRTQKIGDRSLK---RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +RR  ++   ++    R LS +  F + ++      E+ +  +R +K        L+ +Q
Sbjct: 63  QRRLTEVKPETVNHEQRYLSAV--FSELIRLGSWHKENPLGKVRQIKTDQVELTFLSLEQ 120

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++     T++ T  +         L    G R  EA SLT   +   +     + K
Sbjct: 121 VARLLEECKASTNNHTYPVA-------LLCLATGARWEEAESLTRGAVHGGKVHYH-RTK 172

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
             + R VP+   + + I        F + +     LF   R             R   + 
Sbjct: 173 NRQSRSVPIPDELERLI--------FKVGMPGSGRLFMSCR----------AAFRCAYQR 214

Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            G        H LRH+FA+H +  GGD+ ++Q ILGH  ++ T  Y +++ ++    +
Sbjct: 215 CGFQTPGQMTHILRHTFASHYMMGGGDILTLQRILGHSSITMTMRYAHLSPEHLVSAL 272


>gi|256957153|ref|ZP_05561324.1| integrase [Enterococcus faecalis DS5]
 gi|256947649|gb|EEU64281.1| integrase [Enterococcus faecalis DS5]
          Length = 382

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 56/328 (17%), Positives = 114/328 (34%), Gaps = 42/328 (12%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKIT 59
           + N +P   +    +    WL+N        K T++  SY        I    +      
Sbjct: 55  QKNGIPSSTNITFQEVAFMWLENY-------KNTVKESSYSRT----EIIFRKHILPSFG 103

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
              I ++S    +  ++   ++    +     ++ +    K+     +T+++ ++N+   
Sbjct: 104 KIEISKISTAYCQKIVNTWHSKG-SSKQYPLFINYMNQVFKFAINIGVTSQNPVINVIVP 162

Query: 120 K-----KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           K      S    +   + Q    + ++      E+ +I  R+  +  LL   G RI E L
Sbjct: 163 KNQDIITSEKKIKFYTKDQLQIFLKSIEQS---ESTYITIRDYTLFRLLAFSGCRIGELL 219

Query: 175 SLTPQNIMDDQSTLRIQGK---------------GDKIRIVPLLPSVRKAILEY-YDLCP 218
           +LT  ++      L+I                      R + L       + ++  +   
Sbjct: 220 ALTWDDLNIKTGELQINKTIAKSDHYYVSNTPKTKKSNRTLILDAKTITILKKWKLEQKK 279

Query: 219 FDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
           + L L    P  +F     +              R+   LP +   H  RH+ A+ L   
Sbjct: 280 YLLKLGYTQPSRIFTNEENEFTINQAITDRYNIYRKKSNLP-NIGLHGFRHTHASLLYYA 338

Query: 277 GGDLRSIQSILGHFRLSTT-QIYTNVNS 303
           G D + +Q  LGH  + TT   YT++ +
Sbjct: 339 GADHKEVQERLGHANIKTTLDTYTHLTN 366


>gi|60681287|ref|YP_211431.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
 gi|60492721|emb|CAH07494.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
          Length = 431

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 112/295 (37%), Gaps = 29/295 (9%)

Query: 27  IERG-LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIG 84
           +E+G  +K T   Y      F  FL  + ++K T    ++L+   I  F    R  + + 
Sbjct: 126 VEKGQRAKSTYNKYLAVYNHFKTFL--WEKKKRTDMAYKELTKEIIADFDKYLRVEKGLS 183

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +L      + S      +R I          +L+   +    L E++  TL + V + 
Sbjct: 184 ANTLWIYTMPLLSLTDKAWRRGIVRTDPFGEY-SLEMQETDRGYLTEEELRTLANAVFV- 241

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ-----NIMDDQSTLRIQGKGDKIRI 199
                K   +    +       GL   +  +LT       +   ++  +  + K      
Sbjct: 242 -----KKQTSLVRDMFLFGCFTGLSYIDIKTLTHDKIQRMDFDGEEWIITRRTKTRVSSN 296

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPL+   ++ I  Y  L   DL   I             +  V  R+++Q+ +  G+   
Sbjct: 297 VPLMEIAKELIERYKGLAGGDLVFPIP------------SNSVCNRHLKQIAKACGIHKE 344

Query: 260 TTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              H  RH+FAT   L NGG + ++  ILGH  +STTQIY  V ++        I
Sbjct: 345 IGFHLSRHTFATTVYLCNGGTIEALSKILGHKHISTTQIYAEVTNRMVSSDFRAI 399


>gi|322614413|gb|EFY11344.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322621522|gb|EFY18375.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322624383|gb|EFY21216.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322626580|gb|EFY23385.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322633558|gb|EFY30300.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322638399|gb|EFY35097.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322647302|gb|EFY43798.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322649302|gb|EFY45739.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
 gi|322655977|gb|EFY52277.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322661373|gb|EFY57598.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322662570|gb|EFY58778.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322666944|gb|EFY63119.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322671314|gb|EFY67437.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322677679|gb|EFY73742.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|322681494|gb|EFY77524.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322683894|gb|EFY79904.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323195464|gb|EFZ80642.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323197494|gb|EFZ82631.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323203015|gb|EFZ88047.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323205255|gb|EFZ90230.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323210594|gb|EFZ95478.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
 gi|323218124|gb|EGA02836.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323221609|gb|EGA06022.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323227630|gb|EGA11785.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323230888|gb|EGA15006.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323234760|gb|EGA18846.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323238800|gb|EGA22850.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323241499|gb|EGA25530.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323248355|gb|EGA32291.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323252880|gb|EGA36714.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323256999|gb|EGA40708.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323260527|gb|EGA44138.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323264415|gb|EGA47921.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323269549|gb|EGA53002.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
          Length = 339

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 57/317 (17%), Positives = 108/317 (34%), Gaps = 57/317 (17%)

Query: 19  QNWLQNLEIERGLSK-----LTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEI 71
           + WL   E  R LS+      +L  Y          +A        +      +L+  + 
Sbjct: 49  KPWLGEKEDRRHLSEVIEQWHSL--YGQTLADPKRLMAKLRIICTGLGDPIASELTAGDF 106

Query: 72  RAFISKRRTQKI-----------GDRSLK---RSLSGIKSFLKYLKKRKITTESNILNMR 117
             +   R   ++             R++    R+LS +  F    K    +  + +  + 
Sbjct: 107 TKYREARLKGEVRNEDGAFMSPVKPRTVNLEQRNLSSV--FGTLKKLGHWSAPNPLAGLP 164

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             K +      L  ++   L+       S            I  +    G R SEA +L 
Sbjct: 165 TFKIAEGELAFLTPEEIKRLLGACADSQS-------PSLLMIAKVCLATGARWSEAENLQ 217

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
             + +        + KG K R VP+   +   +                 P  RG    P
Sbjct: 218 -GHQLSKYRITYTKTKGKKNRTVPISQDLYAEL-----------------PKNRGKLFTP 259

Query: 238 LNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                 ++   +  +  G+  P     H LRH+FA+H + NGG++  ++ ILGH  +  T
Sbjct: 260 C-----RKAFERAVKRAGIELPEGQCTHVLRHTFASHFMMNGGNILVLRDILGHSDIKMT 314

Query: 296 QIYTNVNSKNGGDWMME 312
            +Y++ +  +  D + +
Sbjct: 315 MVYSHFSPDHLEDAVTK 331


>gi|229162582|ref|ZP_04290542.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus R309803]
 gi|228620845|gb|EEK77711.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus R309803]
          Length = 322

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 59/298 (19%), Positives = 115/298 (38%), Gaps = 19/298 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           VS E     +++L   + + G +  TL+ Y  D R  L    F   +    + + +L+  
Sbjct: 17  VSQENKNLVKDFLTEKKAQ-GKAASTLKQYHWDLRIIL----FLIHQHFNNKNLIELTRK 71

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRN-LKKSNSLP 126
           +IR      +   + +  +   +S ++S L++           +    +R   K      
Sbjct: 72  DIRNLSIIFQELGMSNARVNGLMSALRSALEFCADDDDYAYEFNVGSRVRGLPKNPVREI 131

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             + E+Q   L+D ++              +  L L Y    R +E   +  + + +   
Sbjct: 132 TFITEEQIEWLIDQLIAQER-------YMLATYLALSYYSAARKNEVYQVQKEELTERYF 184

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           T  ++GK  K   +   P V++ I  Y +    D   ++ + +++    + LN  VF  +
Sbjct: 185 TNVVRGKRGKKFRLYYNPRVQECIRLYINQRGKDTIPDLFVRVYKNGERRTLNKSVFNYW 244

Query: 247 IRQLRRYL----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            + L + L    G       H  RHS   +L   G  L  ++S+  H  +STTQ Y  
Sbjct: 245 CKILAKMLYEKEGKEYKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSYLK 302


>gi|295087091|emb|CBK68614.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 266

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 107/300 (35%), Gaps = 38/300 (12%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +++ + +L+    +  ++  T+ +Y+     F              + + + +    + +
Sbjct: 1   MEKFETFLR----QGNMADNTISAYQYAVNDFYSRH----------KDLNKRNLLLYKTY 46

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +     +    +++   +  +  +L ++ K ++        ++++K         +  + 
Sbjct: 47  LI----ETFKPKTVNLRIQALNKYLDFVNKTRL-------RLKSVKVQQR-----SYLEN 90

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           +    + +   +   K  +     ++  L   G R+SE + +  +++        I  KG
Sbjct: 91  VISNADYIFLKNKLKKEENQEWYFVVRFLAATGARVSELIQIKIEHVNI--GYFDIYTKG 148

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K R + +   +R     +      +        LF    G+ +      + ++      
Sbjct: 149 GKNRRLFIPKKLRDETKVWLIAINRE-----SGYLFLNRFGERITTRGISQQLKNYAEKY 203

Query: 255 GL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            L       H+ RH FA + L    D+  +  ++GH  + T +IY    +    + + ++
Sbjct: 204 ELNTKVVYPHSFRHRFAKNFLEKFNDISLLADLMGHESIETARIYLRRTALEQQEIVDKV 263


>gi|55822750|ref|YP_141191.1| integrase/recombinase [Streptococcus thermophilus CNRZ1066]
 gi|55738735|gb|AAV62376.1| integrase/recombinase, phage associated [Streptococcus thermophilus
           CNRZ1066]
 gi|312278176|gb|ADQ62833.1| Integrase/recombinase, phage associated [Streptococcus thermophilus
           ND03]
          Length = 388

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 109/302 (36%), Gaps = 29/302 (9%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ---KIGDRSLK 89
           K T+++     R     L  +         + +L+   I++ ++K             L 
Sbjct: 82  KNTVKA--NTKRAQKGLLNNHVLPLFGEFKLDKLTTPLIQSTMNKLANSTNTGEAGAYLH 139

Query: 90  R-SLSGI-KSFLKYLKKRKITTESNILNMRNL----KKSNSLPRALNEKQALTLVDNVLL 143
              +  + K  L+Y    ++   +   N+       K   +  +  N  +    +    L
Sbjct: 140 YDKIHALNKRILQYGVVLQVIPTNPANNVVLPRNTQKDKKAKVKHFNNDELKQFL--TYL 197

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI------ 197
            +   +K+ +  +  +   L   G RI+EAL+L+  +I  D S + I    +        
Sbjct: 198 DSLDNSKYKNYYDITLYKFLLATGCRINEALALSWSDIDLDNSVVHITKTLNYEMKLNSP 257

Query: 198 ------RIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQ 249
                 R + +       +  Y      +       +  +F     +  N    Q  +  
Sbjct: 258 KSKSGYRDIDIDKQTVTMMKRYQHKQTQEAWKLGRTETVVFSDFIHEYPNSRTLQSRLGT 317

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGD 308
             +  G+  +   H  RH+ A+ LL++G   + +Q  LGH +LS T  IY++++ +N   
Sbjct: 318 HFKRAGVT-NIGFHGFRHTHASLLLNSGIPYKELQHRLGHSKLSMTMDIYSHLSKENAKK 376

Query: 309 WM 310
            +
Sbjct: 377 AV 378


>gi|23464845|ref|NP_695448.1| integrase/recombinase [Bifidobacterium longum NCC2705]
 gi|23465126|ref|NP_695729.1| integrase/recombinase [Bifidobacterium longum NCC2705]
 gi|189438895|ref|YP_001953976.1| Integrase [Bifidobacterium longum DJO10A]
 gi|189439175|ref|YP_001954256.1| Integrase [Bifidobacterium longum DJO10A]
 gi|189440666|ref|YP_001955747.1| Integrase [Bifidobacterium longum DJO10A]
 gi|239620864|ref|ZP_04663895.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|317483184|ref|ZP_07942180.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688283|ref|YP_004208017.1| phage integrase [Bifidobacterium longum subsp. infantis 157F]
 gi|322688576|ref|YP_004208310.1| phage integrase [Bifidobacterium longum subsp. infantis 157F]
 gi|322690989|ref|YP_004220559.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|322691349|ref|YP_004220919.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|23325430|gb|AAN24084.1| probable integrase/recombinase [Bifidobacterium longum NCC2705]
 gi|23325743|gb|AAN24365.1| probable integrase/recombinase [Bifidobacterium longum NCC2705]
 gi|189427330|gb|ACD97478.1| Integrase [Bifidobacterium longum DJO10A]
 gi|189427610|gb|ACD97758.1| Integrase [Bifidobacterium longum DJO10A]
 gi|189429101|gb|ACD99249.1| Integrase [Bifidobacterium longum DJO10A]
 gi|239516229|gb|EEQ56096.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|316915357|gb|EFV36783.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455845|dbj|BAJ66467.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320456205|dbj|BAJ66827.1| putative phage integrase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320459619|dbj|BAJ70239.1| phage integrase [Bifidobacterium longum subsp. infantis 157F]
 gi|320459912|dbj|BAJ70532.1| putative phage integrase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 400

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 122/298 (40%), Gaps = 19/298 (6%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           L E V   L    + W   L    GL+  T+  Y      FL +L  +      + ++  
Sbjct: 102 LAEPVVPGLAVVMERWEAYLAGS-GLASATVGHYRRMAGLFLTWLESH-----GVVSLDG 155

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
              + +  F++  R++   + S++ + S ++   ++L +  +      + +  +++++++
Sbjct: 156 SDGSHVLGFLAGLRSR-WSESSMRHAASDLRPLFRWLGRDDLAD---AIGLAGIRRTHAI 211

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
              L + +   L++         ++ + +R++AI  L   CGLR  + + L   ++  D 
Sbjct: 212 AGTLPDDEHRRLLEACA------SRSVPSRDAAITLLSLTCGLRACDVIGLRIADVDWDS 265

Query: 186 STL-RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
            ++  +Q K      VP+   +   +  +        + +     ++             
Sbjct: 266 MSIGLVQRKTGNPLTVPMTGPLAARLASWLLDERPATDDDRVFVRYKAPHVALRGHSSVY 325

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY--TN 300
             I ++ R+ GL     +  LR + AT +L     L +I ++LGH    +T++Y  T+
Sbjct: 326 EAISRVMRHAGLGRRGGSRLLRRNAATRMLEAATPLPTISAVLGHADPDSTRVYMATH 383


>gi|281426208|ref|ZP_06257121.1| mobilizable transposon, int protein [Prevotella oris F0302]
 gi|281399784|gb|EFB30615.1| mobilizable transposon, int protein [Prevotella oris F0302]
          Length = 418

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/304 (18%), Positives = 111/304 (36%), Gaps = 25/304 (8%)

Query: 16  KERQNWLQNL-EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           + +QN+++   ++     + +  S + +  +  + L  +  + +    I      + + F
Sbjct: 125 RLQQNFIKYFDKVADKRHRNSSVSIQTNWERVHVLLKMFAGDTLLFSQIDNRLAEDFKYF 184

Query: 75  ISKR-----RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +        +   I   +     S  K+ LK        T      ++ +++  S    L
Sbjct: 185 LLSAPCGGSKKGTISRNTASTYFSIFKAALKQAFIDGYLTIDLSAKIKGIQEQESRREYL 244

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              +      N L +T  E   +  + +A+   L   GLR  +   L    I  + +  +
Sbjct: 245 TLDEL-----NKLANTPCERDVL--KRAALFSAL--TGLRHCDIQKLKWNEIAIEGNQAK 295

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           +     K + V  +P   +A     +    +  +   LP          NP    R +R 
Sbjct: 296 LLFTQKKTKGVEYMPISEQAFKLCGEPRQPEQLVFEGLP----------NPSWISRPLRA 345

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+    + H  RH+FAT  L+NG D+ ++  +LGH  + TTQ+Y  V  +     
Sbjct: 346 WIEKAGIQKHLSFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKVVDEKKNKA 405

Query: 310 MMEI 313
              I
Sbjct: 406 ANAI 409


>gi|225388659|ref|ZP_03758383.1| hypothetical protein CLOSTASPAR_02395 [Clostridium asparagiforme
           DSM 15981]
 gi|225045257|gb|EEG55503.1| hypothetical protein CLOSTASPAR_02395 [Clostridium asparagiforme
           DSM 15981]
          Length = 406

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 105/292 (35%), Gaps = 34/292 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +   +E+K+   +I  +  ++ +    + + + I   ++      +K+      +     
Sbjct: 113 MNLLSEDKLGAASIENVKLSDAKELALRMQEKGIAFNTISNHKRSLKAAFFLAVQDDCLR 172

Query: 110 ESNI-LNM-RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++    N+   L     L   L+ +Q   L++ +     ++  + +      + +L   G
Sbjct: 173 KNPFDFNINEVLNDDTELKVPLSPEQEKELLNFIQEDKVYQKYYDE------IVILLETG 226

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAIL 211
           LR+SE   LT  ++  ++  +++                      IR +P+  +  +A  
Sbjct: 227 LRVSELCGLTDTDLDFEKGYVKVDHQLLRSAEDGFYIETPKTESGIRQIPMTAAASEAFK 286

Query: 212 EYYDLCPFDLNL---NIQLPLFRGIRGKPLNPGVFQRYIRQLRRY------LGLPLSTTA 262
                      +        LF    G P     +    + L +         LP   T 
Sbjct: 287 RVLKNRKGAKPIIIDGYAHFLFLNRDGLPKTAANYDAMFKCLLKKYNKCHEAPLPKVMTP 346

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           HT+RH+F T   + G + +++Q I+GH  +  T   Y + N  +    M  +
Sbjct: 347 HTMRHTFCTKKANAGMNPKALQYIMGHANIVMTLNYYAHANFDSAKAEMDRL 398


>gi|329960376|ref|ZP_08298801.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328532814|gb|EGF59596.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 407

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 115/301 (38%), Gaps = 27/301 (8%)

Query: 20  NWLQNLE-IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           N+L   +      +K  ++  +    +F  FL               ++   +  F++  
Sbjct: 122 NFLDYFQAYINSYTKKDIRMVQIALSRFKDFLKEQYPMNEFSIKPELITKEMMEKFVAYL 181

Query: 79  RTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQAL 135
           +++ +G   +S+ +     K  ++Y     +  +    ++     S  L +  L+ ++  
Sbjct: 182 QSRSVGEGAKSIYQRF---KKVIRYAIDHDVMLKDPCKSVTCKVDSQMLRKDVLSPEEIQ 238

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--GK 193
            L+        H          A ++ LY CGLR  +   LT +N+      L+ +    
Sbjct: 239 KLI------ACHYDNENPTIRRAFIFCLY-CGLRFCDVKDLTYKNVDYANRLLKFEQSKT 291

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
                   ++  +   +L      P D N L   LP +              + +++  +
Sbjct: 292 KGHSASSGVVIPLNDGLLSIIGEAPADKNCLIFDLPTYESCC----------KSVKRWVK 341

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    + H  RHSFA ++L+NG +++++ S+LGH  L  T+ YT    K   + +  
Sbjct: 342 RAGIDKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLKEEAINS 401

Query: 313 I 313
           +
Sbjct: 402 L 402


>gi|317055389|ref|YP_004103856.1| integrase family protein [Ruminococcus albus 7]
 gi|315447658|gb|ADU21222.1| integrase family protein [Ruminococcus albus 7]
          Length = 393

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/323 (16%), Positives = 118/323 (36%), Gaps = 52/323 (16%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQS--YECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + +  +  + W +        +K  L+S  YE   +     L       I    I +++ 
Sbjct: 66  AMKFQELAEEWFE------NYAKNALRSTTYERMLQ-----LTHRVYPAIGHLRIDKITA 114

Query: 69  TEIRAFISKRRTQK--------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             ++ F++    +         +  ++++ +LS I     Y  +  + +++    +   K
Sbjct: 115 RHLQGFVNSLAKEGANEKTGKPLAPKTIRHNLSFISDVFSYAVRMDLVSDNPCRKVTIPK 174

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                    ++++   L+  +           D +  A  YL+   G R SE L L  ++
Sbjct: 175 GEVKEKPIYSQEEIAQLLTAINGE--------DTKYRAFFYLIAYSGFRRSEMLGLEWKD 226

Query: 181 IMDDQSTLRIQGKGDKI----------------RIVPLLPSVRKAILEYYDLCPFDL--- 221
           I  + + + I+   +                  R++ + P +   + E  D    +    
Sbjct: 227 IDFENNIISIKRTSNYTAERGIYTDTTKTKRSKRVLKISPYIMNILKELKDEQDEEALRL 286

Query: 222 --NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
                    LF    G+P+N      ++++      +P     H+ RH  A+ L+S+G D
Sbjct: 287 GDKWVESDRLFVKWNGEPMNNQTPYGWLKEFCEKNDMPFY-GIHSFRHFAASALISSGLD 345

Query: 280 LRSIQSILGHFRLSTT-QIYTNV 301
           + ++   LGH    TT  +Y ++
Sbjct: 346 VVTVSGALGHCNSGTTLNVYAHM 368


>gi|238025655|ref|YP_002909887.1| Phage integrase family protein [Burkholderia glumae BGR1]
 gi|237880320|gb|ACR32651.1| Phage integrase family protein [Burkholderia glumae BGR1]
          Length = 613

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 56/352 (15%), Positives = 115/352 (32%), Gaps = 72/352 (20%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS--------------K 77
           +  TL+SY  +  + L++     E    + ++R       +AF++               
Sbjct: 254 APNTLRSYRRELERLLLWC--VVERGTALSSLRVEDCEAYKAFLASPSAAFCGPRAARGS 311

Query: 78  RRTQKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-------- 124
           RR +   D      S + ++  I++   +L + +    +    + + +            
Sbjct: 312 RRWRPFSDAPMSLDSQRYAIRTIRAAFDWLVRIRYLAGNPWAAVTDPRPVKRAALLRVDR 371

Query: 125 -LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE--------ALS 175
            LP  L  +    +       +    +W  A   A+L L+   GLR+SE           
Sbjct: 372 ALPLDLWTRVRAEIASWSESPSPEAARWRAA--QALLLLMGDSGLRVSEAAAASREQLAW 429

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           L     +     L++ GKG K R V +  +   A+  ++       + +           
Sbjct: 430 LPGDGEVPATWWLQVIGKGRKERFVAVSDACVAALRAHWADRGRQFDSDQAAGALLAPLV 489

Query: 236 KP--------------------LNPGVFQRYIRQLRRYLGLPL------------STTAH 263
            P                     +       +  + + L   +             T+ H
Sbjct: 490 IPRTLRAQTKFESDKASADAAGYSVRGAATLVAWVLKRLQATMGDLSEPERRQLARTSPH 549

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +LRH+F T  +++G  L  +Q +LGH  L TT +Y     +       + + 
Sbjct: 550 SLRHTFGTQSVASGMTLDVVQQLLGHASLQTTSVYVTAEQRRQRIEAAKFHA 601


>gi|303328556|ref|ZP_07358991.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
 gi|302861322|gb|EFL84261.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
          Length = 287

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 58/302 (19%), Positives = 119/302 (39%), Gaps = 25/302 (8%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +L   + W   L   R L   T   Y  D  ++ + L  Y   K    T+  +   +I+ 
Sbjct: 1   MLTLDEAWNSYLAT-RHL---TPYGYLTDMSRYRVHLQTYWHGK----TLTSIKTLDIQF 52

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           + +    + +  ++++  L  ++  ++   +  +  E  +         +   R L  ++
Sbjct: 53  YTNHLFEKGLSPQTVRLCLGQLRRIMRRAHRLGLL-EGQLPYFEMPPADSVRYRYLEPEE 111

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQG 192
           A +L+  +              + A+L L    G+R SE  SL   NI    ++ +  + 
Sbjct: 112 ATSLLQVL------RNLSQLWHDIALLSL--NTGMRASEIFSLRGANINVPQENIILHKT 163

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K  K RIVPL       + +Y+      L    +       +   ++   F+R +     
Sbjct: 164 KNLKQRIVPLNSPSLNIVKKYHRKNAELLFHQEES---SNKQFVKISKK-FRRAVEISGL 219

Query: 253 YLGLPLS---TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             G+  +      HTLRH+FA+ L+  G  L+ + ++LGH  +  T+ Y ++    G + 
Sbjct: 220 NEGIIDNRYRVVFHTLRHTFASWLVQRGVSLQVVSNLLGHSSVRVTERYAHLAPDQGRNA 279

Query: 310 MM 311
           + 
Sbjct: 280 LK 281


>gi|189465362|ref|ZP_03014147.1| hypothetical protein BACINT_01711 [Bacteroides intestinalis DSM
           17393]
 gi|189437636|gb|EDV06621.1| hypothetical protein BACINT_01711 [Bacteroides intestinalis DSM
           17393]
          Length = 407

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 114/301 (37%), Gaps = 27/301 (8%)

Query: 20  NWLQNLE-IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           N+L   +      +K  ++  +    +F  FL               ++   +  F++  
Sbjct: 122 NFLDYFQAYINSYTKKDIRMVQIALSRFKDFLKEQYPMNEFSIKPELITKEMMEQFVAYL 181

Query: 79  RTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQAL 135
           +++ +G   +S+ +     K  ++Y     +  +    ++     S  L +  L+ ++  
Sbjct: 182 QSRSVGEGAKSIYQRF---KKVIRYAIDHDVMLKDPCKSVTCKVDSQMLRKDVLSPEEIQ 238

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--GK 193
            L         H          A ++ LY CGLR  +   LT +N+      L+ +    
Sbjct: 239 KL------AACHYDNENPNVRRAFIFCLY-CGLRFCDVKDLTYKNVDYANRLLKFEQSKT 291

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
                   ++  +   +L      P D N L   LP +              + +++  +
Sbjct: 292 KGHSASSGVVIPLNDGLLSIIGEAPADKNCLIFDLPTYESCC----------KSVKRWVK 341

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    + H  RHSFA ++L+NG +++++ S+LGH  L  T+ YT    K   + +  
Sbjct: 342 RAGIDKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLKEEAINS 401

Query: 313 I 313
           +
Sbjct: 402 L 402


>gi|319937080|ref|ZP_08011489.1| hypothetical protein HMPREF9488_02323 [Coprobacillus sp. 29_1]
 gi|319807858|gb|EFW04443.1| hypothetical protein HMPREF9488_02323 [Coprobacillus sp. 29_1]
          Length = 391

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 57/330 (17%), Positives = 125/330 (37%), Gaps = 31/330 (9%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +PE     L      +++ +E +   +  TL  Y       +     Y +       I  
Sbjct: 59  IPESRKRTLNDVFDEYVE-IEGKIKWAPATLYYY-------IKTHQTYVKGNFGNVPIES 110

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +SY  ++A I++  +Q+    ++K          K+  +    + + + N+    K    
Sbjct: 111 VSYVSLQAHINEL-SQRYNYPTVKNIKKVYSVIFKHGVRAGYISINPVPNILLPNKPEKK 169

Query: 126 P--RALNEKQALTLVDNVLLHTSHETKWIDARNS-----AILYLLYGCGLRISEALSLTP 178
                +++     L++ ++  + +      A+         L +    GLRISE ++L  
Sbjct: 170 EGVEIISDDDLKRLIEEIIKASPNRCFAKKAQYKYKSYGIALLIGRYTGLRISEVMALKK 229

Query: 179 QNIMDDQSTLRIQGKGDK-----------IRIVPLLPSVRKAILEYYDLCPFDLNL-NIQ 226
           ++   +++ L I+ + +             R+       R  I            + N  
Sbjct: 230 EDFDLERNQLTIRRRIEHAGLKRKEIYLTERLKTKSSKARVEICSILSEYLKSWFVENPY 289

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
             +     G  ++P  FQ  IR   + L +      H LRH++AT L+  G +   ++ +
Sbjct: 290 DFVICDEHGDFISPVNFQERIRDTAKKLDIKFH--YHMLRHTYATELMVAGVNPIVVRDL 347

Query: 287 LGHFRLSTT-QIYTNVNSKNGGDWMMEIYD 315
           L H  ++TT  +YT+ +  +    + ++YD
Sbjct: 348 LRHSTVNTTWNVYTHPSRDDQRKVLDDLYD 377


>gi|298484512|ref|ZP_07002659.1| integrase [Bacteroides sp. D22]
 gi|298269334|gb|EFI10948.1| integrase [Bacteroides sp. D22]
          Length = 423

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 56/301 (18%), Positives = 116/301 (38%), Gaps = 23/301 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISK 77
           +N+   + I+R  ++ T + YE   +Q   FL   Y  E I +  +       +  F   
Sbjct: 136 ENFKGRIGIDR--AQSTYKQYEVLYKQLKQFLREEYHVEDIPLAELDLPFIEALNFFF-- 191

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  +K+  R++K  +  +   ++    R+I T          K      ++L   +   L
Sbjct: 192 RVKRKMKPRTVKARIVLLNKVIRLALHRRIITRPPFDGFELEKTELKN-KSLTNDELDLL 250

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDK 196
           +   L   +            +       GL  ++   L+ ++I+ +D  +L I      
Sbjct: 251 MKTPLKSGTQR------FIRDMFLFSTFTGLAYADVHKLSWKDIITEDDGSLWI----SA 300

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R         K +     +  +   L     +F       ++ G     ++++ R  G+
Sbjct: 301 NRQKSHTEFNVKLLNIPIRIMEYYKGLAPDGKVFP-----HMSLGQVNVGLKRIARNCGI 355

Query: 257 PLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
               + H  R++FA+   LS G  + S+  +LGH  + TTQ Y  +N++  G+ M ++  
Sbjct: 356 NRKLSYHMARYTFASQICLSQGVPIESVSRMLGHKHIETTQRYARLNNEKIGNDMQQLSA 415

Query: 316 Q 316
           +
Sbjct: 416 R 416


>gi|256113171|ref|ZP_05454048.1| Tyrosine recombinase xerC [Brucella melitensis bv. 3 str. Ether]
          Length = 308

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 95/259 (36%), Gaps = 27/259 (10%)

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
           +E +            + + I   R +   + ++ R ++ +   L+  K  K+    N+ 
Sbjct: 70  DEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSKLLR--KAHKMGDIFNLP 127

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
                K+     R L +++   L   +                 +   L   G R+ EA+
Sbjct: 128 EFIRQKERVGRIRFLEQEEEKRLFAAIKSRCEDS--------YRLSVFLVDTGCRLGEAI 179

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
            LT  +I + + T  +  K ++ R VPL    RKA               ++ P      
Sbjct: 180 GLTWNDIQEQRVTFWV-TKSNRSRTVPLTRRARKA--------SHIPRERLKGPF----- 225

Query: 235 GKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
              LN   F++   + +   GL        H LRH+ A+ L+  G D+R +Q  LGH  L
Sbjct: 226 -SMLNQVRFRQIWNEAKAEAGLGADDQIVPHILRHTCASRLVRGGIDIRRVQMWLGHQTL 284

Query: 293 STTQIYTNVNSKNGGDWMM 311
             T  Y ++ + +    + 
Sbjct: 285 QMTMRYAHLATHDLDSCVK 303


>gi|153938928|ref|YP_001392711.1| phage integrase family site specific recombinase [Clostridium
           botulinum F str. Langeland]
 gi|152934824|gb|ABS40322.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum F str. Langeland]
 gi|295320692|gb|ADG01070.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum F str. 230613]
          Length = 199

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 82/190 (43%), Gaps = 10/190 (5%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L +++A+ L + ++            R+ A+  + Y CGLR SE   +   +   D+ 
Sbjct: 10  KYLTQQEAIRLFNAIIFS----DNSHAVRDLALFRVAYRCGLRASEISLIKLDDYNADKG 65

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            L  +  KG     + L  + +KA+  Y        N      LF+  +  P++      
Sbjct: 66  DLYCKRLKGSNNNTIRLDVTTKKALDAYIRDYKISCNSET---LFKSQKNNPISRQTLDY 122

Query: 246 YIRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            +++  +   +   +    HTL+H+ A HL  +  D++ +Q  LGH  +S T+I+    +
Sbjct: 123 LMKKYCKIANISDKSKHHFHTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEIHFQFTT 182

Query: 304 KNGGDWMMEI 313
           K      M++
Sbjct: 183 KQQEKMYMKL 192


>gi|7530139|emb|CAB86871.1| integrase [Klebsiella pneumoniae]
 gi|219935429|emb|CAI43345.1| integrase [Pseudomonas aeruginosa]
          Length = 266

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 104/285 (36%), Gaps = 64/285 (22%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------------- 212
             T+ ++ GKG K R + L  S+  ++ E                               
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYP 221

Query: 213 -----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
                +     F  + +   P    +R   +    FQR  ++   
Sbjct: 222 RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVE 266


>gi|322378313|ref|ZP_08052784.1| putative tyrosine recombinase XerC [Streptococcus sp. M334]
 gi|321280746|gb|EFX57775.1| putative tyrosine recombinase XerC [Streptococcus sp. M334]
          Length = 209

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/218 (23%), Positives = 87/218 (39%), Gaps = 22/218 (10%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K    +L   +  + LS  T+++Y+ D  QF                     +  + ++I
Sbjct: 4   KLISAYLDYCKTHKRLSSHTIRAYKNDLMQFYNS-----------------DHDNVESYI 46

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQA 134
                  I   +L+R ++ +K F  YLK + I  E+    +R   +    LP+ +     
Sbjct: 47  EHLTQSNIKTNTLRRKIACMKVFYNYLKYQNIIEENPFNQLRFQFRTEKVLPKTIPHDIL 106

Query: 135 ----LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
               + L   V++  +   K    RN  I+ LL   G+RISE   +  ++I     TL I
Sbjct: 107 KSIFIYLEQKVIVSKTDYQKQHAERNLLIISLLLSTGIRISELCHIRLKDINLSNKTLHI 166

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
            GKG K RI+ L       +LE Y     + + +   P
Sbjct: 167 IGKGKKERILFLGDQTTFNLLETYINKTRNESNDFLFP 204


>gi|228939736|ref|ZP_04102317.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228972599|ref|ZP_04133203.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228979206|ref|ZP_04139549.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis Bt407]
 gi|228780563|gb|EEM28787.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis Bt407]
 gi|228787140|gb|EEM35115.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228819968|gb|EEM66012.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|326940330|gb|AEA16226.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 369

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 57/315 (18%), Positives = 115/315 (36%), Gaps = 39/315 (12%)

Query: 18  RQNWLQNLEIERGLS--KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            +++L +    + +S  K T   Y+    Q       +    I +  + +L+   I+   
Sbjct: 65  LKDYLNHWLEIKSMSIEKSTFAVYKAVINQ-------HVIPSIGMVALHKLNVIHIQKCY 117

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                + I + S+      +KS L    K+ I + +        KK  +  +   E++  
Sbjct: 118 KTAIDKGIANNSILLMHRILKSALNLAVKQNIISRNPAEFAEIPKKEKTPIQTWTEEEVK 177

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
             + +     S E+++      AI       G+R+ E L L  Q+I  ++ T+ I     
Sbjct: 178 KFLAH-----SQESRYHIGYLLAI-----TTGMRLGEVLGLRWQDIDFEKHTVTINQTSG 227

Query: 196 KI-------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-----FRGIRGKP 237
                          R +P+      A+ ++  L   +        L          G+ 
Sbjct: 228 HDNKIKKTAKTNSSKRTIPVPNETIAALKKHKILINKEKLRFGSAYLDQDLINCNEFGRI 287

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
           +    F++   ++   +G+      H LRH+ AT LL  G + + I   LGH  +S T  
Sbjct: 288 IKRAHFRKSFIRMTHKVGI-KEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLS 346

Query: 297 IYTNVNSKNGGDWMM 311
           +Y++V      + + 
Sbjct: 347 VYSHVLPNMQEEAVK 361


>gi|229075069|ref|ZP_04208071.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock4-18]
 gi|228708126|gb|EEL60297.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock4-18]
          Length = 369

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 58/325 (17%), Positives = 113/325 (34%), Gaps = 43/325 (13%)

Query: 8   EIVSFELLKERQNWLQ--NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           E     L +   +WL+  ++ IER     T   Y         F+  +    I +  + +
Sbjct: 59  EPSKVTLKEYLNHWLEIKSMSIERS----TFVGYR-------AFINQHVIPSIGMVALHK 107

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           L+   I+        + I + S+  +   +KS L    K+ I +++        KK  + 
Sbjct: 108 LNVMHIQKCYKTAMDKGIANNSILLTHRILKSALNLAVKQNIISQNPAAFAEIPKKERTS 167

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
            +   E++        LLH+      I         L    G+R+ E L L  Q++  ++
Sbjct: 168 IQTWTEEEVKKF----LLHSQESRYHIGY------LLAITTGMRMGEVLGLRWQDVDFEK 217

Query: 186 STLRIQGKGDKI-------------RIVPLLPSVRKAILEYYDLCPFDL-----NLNIQL 227
            T+ I                    R +P+     +++  +      +            
Sbjct: 218 HTVTINQTSGHDNKIKKTAKTNSSKRTIPVPRETIESLKRHKITINKEKLRFGSAYQDFD 277

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
            +     G  +    F++   +     G+      H LRH+ AT LL  G + + I   L
Sbjct: 278 LINCNEFGMIIKKANFRKNFIRATHNAGI-KEIKFHDLRHTHATILLKQGVNPKIISERL 336

Query: 288 GHFRLS-TTQIYTNVNSKNGGDWMM 311
           GH  +S T  +Y++V      + + 
Sbjct: 337 GHTDISLTLSVYSHVLPNMQEEAVK 361


>gi|167462395|ref|ZP_02327484.1| DNA integration/recombination/invertion protein [Paenibacillus
           larvae subsp. larvae BRL-230010]
 gi|322383376|ref|ZP_08057161.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321152335|gb|EFX45156.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 413

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 64/352 (18%), Positives = 123/352 (34%), Gaps = 57/352 (16%)

Query: 8   EIVSFELLKERQNWLQNLEIER------GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           E ++ + +  RQ +++N    +       LS LT Q+Y       + F+          +
Sbjct: 68  EYIAPQKMTLRQ-FIENEWEPKYASNTENLSPLTYQTY-------MHFIENRIMPVFGHK 119

Query: 62  TIRQLSYTEIRAFISKR---------RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
            +  +    I  FI+           ++ K+   +++     +K+      + ++   + 
Sbjct: 120 NLEDIRTLHIVTFINDLSKPEARKDGKSGKLSPGTIQYIHRVLKNIFNRATEWQLIKTNP 179

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           I+ ++  K   +     +E +A   +       +  +K        IL  + G G R  E
Sbjct: 180 IVGVKKPKVEQTEFDFYDEDEAREAI-------AALSKEPRRWRLLILGSMVG-GFRRGE 231

Query: 173 ALSLTPQNIMDDQSTLRIQGK----------------GDKIRIVPLLPSVRKAILEYYDL 216
            L+L   N+  D  TL I                       RIV +       +  +   
Sbjct: 232 LLALEWSNVDFDNMTLSINKSISLTKDGRAVEKAPKSKSSKRIVDMPDWYMDELKVHEYE 291

Query: 217 CPFD-------LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
              +            +  +F    GKP +      +     +   L      H LRHS 
Sbjct: 292 WKKEKLSVGDKWRGGDRQYVFHAGFGKPFHHTYPTEWWNGFTKRHNL-KRVRFHDLRHSS 350

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPS 320
           AT L+  G  ++++Q  LGH +  TT  IY +V  K   D   E +++  P+
Sbjct: 351 ATLLIEAGASMKAVQQRLGHSKHQTTADIYAHVTKKVSRDT-AEKFNKFAPN 401


>gi|229120195|ref|ZP_04249446.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus 95/8201]
 gi|228663236|gb|EEL18825.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus 95/8201]
          Length = 322

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 59/290 (20%), Positives = 109/290 (37%), Gaps = 19/290 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L   + + G +  TLQ Y  D R  L    F   E    + +  L+  +IR     
Sbjct: 25  VKDFLIEKKAQ-GKAASTLQQYGWDLRIIL----FLIHEHFNNKDLIDLTRKDIRNLSII 79

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRN-LKKSNSLPRALNEKQA 134
            +   + +  +   +S ++S L++           +    +R   K        + E Q 
Sbjct: 80  FQELGMSNARVNGLMSALRSALEFCADDDDYDYEFNVGSRVRGLPKNPVREITFITEDQI 139

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D ++ +            +  L L Y    R +E   +    + +   T  ++GK 
Sbjct: 140 NWLIDELIENEK-------YMLATYLALSYYSAARKNEVYQVQKTGLTERYYTNVVRGKR 192

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K   +   P V+K I  Y +    D   ++ + +++    K LN  VF  + +   + L
Sbjct: 193 GKKFRLYYNPRVQKCIRLYIEQRGKDAIPDLFVRVYKNGGRKLLNKSVFNYWCKIFAKML 252

Query: 255 ----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               G       H  RHS   +L   G  L  ++S+  H  +STTQ Y  
Sbjct: 253 YEKEGKEYKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSYLK 302


>gi|226328879|ref|ZP_03804397.1| hypothetical protein PROPEN_02780 [Proteus penneri ATCC 35198]
 gi|225202065|gb|EEG84419.1| hypothetical protein PROPEN_02780 [Proteus penneri ATCC 35198]
          Length = 186

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 73/180 (40%), Gaps = 8/180 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L   +  +++         +      R+  +  + +  G R+SE   LT  +I  +  
Sbjct: 5   KFLTRFEINSILKQ------AKEGRYPERDYCMFLMCFLHGFRVSELCKLTLSDIDLESR 58

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            L ++  KG      P++    +A++ +          + +  +F   +  P++      
Sbjct: 59  ILYVRRLKGGLSTTQPIIEDEYEALVNWLKKRETWREADSE-WVFLSQKTGPISRQQVYG 117

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +R+L +   + +    H LRH+    L   G D R IQ  LGH  +S T IYT  NSK 
Sbjct: 118 LLRRLGKKANVSIIPHPHMLRHACGYALADLGRDTRLIQDYLGHRNISHTVIYTASNSKR 177


>gi|229138846|ref|ZP_04267426.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST26]
 gi|228644577|gb|EEL00829.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST26]
          Length = 322

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 58/304 (19%), Positives = 112/304 (36%), Gaps = 22/304 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L   + + G +  TL+ Y  D R  L  +  + E K     +  L+  +IR     
Sbjct: 25  VKDFLIEKKAQ-GKAASTLKQYGWDLRIILFLIHEHFENK----NLIDLTRKDIRNLSIV 79

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT--TESNILNMRN-LKKSNSLPRALNEKQA 134
            +   + +  +   +S ++S L++           +    +R   K        + E Q 
Sbjct: 80  FQEMGMSNARVNGLMSALRSALEFCADDDDYNYEFNVGSRVRGLPKNPIREITFITEDQI 139

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D +L              +  L L Y    R +E   +  + + +   T  ++GK 
Sbjct: 140 NWLIDELLEQEK-------YMLATYLALSYYSAARKNEVYQVQKEGLTEQYYTNVVRGKR 192

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI----RQL 250
            K   +     V+K I  Y      D   ++ + +++    + LN  VF  +     + L
Sbjct: 193 GKKFRLYYNHRVQKCIRLYIKQRGKDTIPDLFVRVYKNGERRRLNKSVFNYWCGIFAKML 252

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G       H  RHS   +L   G  L  ++S+  H  +STT+ Y         + +
Sbjct: 253 NEKEGKDFKMNPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTESYLK---DRSEEDI 309

Query: 311 MEIY 314
            EI+
Sbjct: 310 AEIF 313


>gi|331083927|ref|ZP_08333036.1| hypothetical protein HMPREF0992_01960 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403352|gb|EGG82912.1| hypothetical protein HMPREF0992_01960 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 423

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/333 (16%), Positives = 118/333 (35%), Gaps = 39/333 (11%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + L+   G+   TL +Y               +E    + I ++  ++ + F+ K +   
Sbjct: 91  RYLQTRTGVKPNTLTNYSY-------VKNLMAKEPFGSRKIAEVKTSDAKLFLIKMQQDG 143

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
            G  ++K     ++   +      I  ++        + +  +    + ++A+T      
Sbjct: 144 RGSSTIKTVRGVLRPAFQMAVDDDILVKNPF----GFQLAGVIINTEHTREAITKEQMKQ 199

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI------------ 190
                    +  +   + Y+L+  GLRISE   LT ++I      + I            
Sbjct: 200 FLKFVHDDNVYHKYYEVFYILFHTGLRISEFCGLTIKDIDMQNHIINIDHQLQRTNHMEY 259

Query: 191 ----QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGV 242
                      R +P+   V +         P DL           LFR  +G P     
Sbjct: 260 HIESTKTNAGTRKLPMTDDVYEMFKTILANRPKDLPEIMVGGYIGFLFRDKKGMPEVALH 319

Query: 243 FQRYIRQLR-RYLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ- 296
           +++  +    RY  +        + H  RH++ ++    G + +++Q ++GH  +  T  
Sbjct: 320 WEQRFKHAVNRYNSIFKVQMPKISPHVCRHTYCSNQAKAGMNPKTLQYLMGHSEIGVTMN 379

Query: 297 IYTNVNSKNGGDWM--MEIYDQTHPSITQKDKK 327
            YT++   +  + M  ME  +Q    I + + K
Sbjct: 380 TYTHLGLDDAKNEMIRMEELNQARKEIDKTEGK 412


>gi|282877198|ref|ZP_06286036.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281300690|gb|EFA93021.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 410

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 57/290 (19%), Positives = 115/290 (39%), Gaps = 22/290 (7%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           +  + +T++ YE   R     +    +++     + +++   +RAF    +T+K     +
Sbjct: 130 KDYALITVRRYESCKRYLAELIKLKYDKE--DLPLSEINGELVRAFEFYLKTEKECQQNT 187

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           + R +  +K         +  T+   + ++  +K   +   L   + LT + N       
Sbjct: 188 VIRYMKCLKKITNLALANEWITKDPFIGIKFHEKEV-IREFLTMDELLT-IYNKEFSLDR 245

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRIVPLLP-- 204
            T   D     +       GL   +   L+ ++I+ D+     I+    K + +  +P  
Sbjct: 246 ITVVRD-----VFTFAAFTGLAFIDVQQLSAEHIVQDNNGNYWIRKPRQKTKNMCNIPLL 300

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            +   ILE Y   P     N+ LP+    +           Y++++    G+    T HT
Sbjct: 301 DIPMQILEKYKSHPTCQKKNVLLPVPCNQKM--------NSYLKEIADLCGISKCLTTHT 352

Query: 265 LRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            RHS+AT   L+NG  + ++  +LGH  +  TQ Y  V   +    MM +
Sbjct: 353 ARHSYATSVCLANGVSIENVAKMLGHSNIKMTQHYARVLDSSIFKDMMNV 402


>gi|152993870|ref|YP_001359591.1| phage integrase family site specific recombinase [Sulfurovum sp.
           NBC37-1]
 gi|151425731|dbj|BAF73234.1| site-specific recombinase, phage integrase family [Sulfurovum sp.
           NBC37-1]
          Length = 379

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 102/289 (35%), Gaps = 32/289 (11%)

Query: 46  FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR 105
           F      + ++ +    +  ++  +I   I   + + +   ++ R    + +       +
Sbjct: 104 FANRYRDHIKDSLGHLPVESITKNDINNLIMLLKDKNLAPATIDRIRQQVSATFNVAIGK 163

Query: 106 KITTESNI----------LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
           +    +            + +     +N+  R L++ +A  L+  + L            
Sbjct: 164 EKCRNNPASVSRVDSSSLMRLNKKSINNARERYLSKDEANLLLSELKLRRFDV------- 216

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSVRKAILEYY 214
              +  L    G R  E L +  ++I  +   +  ++ K    R + +   V   + E  
Sbjct: 217 -YFMALLALTTGARAGEILKIQYKDIDLENRYINLVETKNGSSRKIKITSKVYDILNEIE 275

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLN--PGVFQRYIRQL----RRYLGLPLSTTAHTLRHS 268
                    +    LF G +   L   P ++   + +L                HTLRH+
Sbjct: 276 FE-------SPNKYLFAGSKHDHLQAIPNIYSIIVGELFNSELDSRDTKHRVCFHTLRHT 328

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           FA+ L  NG  + +IQ ++GH  ++ T  Y  ++   G + +  + ++ 
Sbjct: 329 FASWLAINGTPIFTIQKLMGHKDINMTLRYAKLSPDAGVEAVNSLEEKF 377


>gi|295840945|dbj|BAJ06836.1| integron integrase intI [uncultured bacterium]
 gi|295840952|dbj|BAJ06841.1| integron integrase intI [uncultured bacterium]
          Length = 280

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 57/284 (20%), Positives = 106/284 (37%), Gaps = 60/284 (21%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           +  S  T ++Y    R+F+ F      E +  Q I +        F++     +K+   +
Sbjct: 19  KHYSIRTEETYVMWIRRFMRFHKKRHREDMGEQEISE--------FLTHLAVKKKVASST 70

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++L+ I    +   KR +     I +++  K+   LP    + +A  ++D++   T  
Sbjct: 71  QNQALNAIVFLYRETLKRDLGE---IRDIQWAKRPARLPVVFTKDEAKAVLDHMEGTT-- 125

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
                      +  LLYG GLR+ E L L  +++      + ++  KG++ R+  L  S+
Sbjct: 126 ---------WLMASLLYGSGLRLKECLRLRVKDVDFGYKQINVRDAKGNQDRVTILPASL 176

Query: 207 RKAILEYY------------------------------------DLCPFDLNLNIQLPLF 230
            + +  +                                         F  +   + P  
Sbjct: 177 IEPLQRHLKKVRTLHEQDLEDGFGAVYLPYALERKYRNANRQRGWQYVFPSSRRSKDPRT 236

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
             IR   +   V QR +R   R  G+    + HT RH+FATHLL
Sbjct: 237 GIIRRHHIAETVLQRAVRVAVRVSGMVKPGSCHTFRHTFATHLL 280


>gi|229176179|ref|ZP_04303670.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus MM3]
 gi|228607274|gb|EEK64605.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus MM3]
          Length = 322

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 116/298 (38%), Gaps = 19/298 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           VS E     +++L   + + G +  TLQ Y  D R  L  +  + E K     + +L+  
Sbjct: 17  VSQENKNLVKDFLIEKKAQ-GKAASTLQQYHWDLRIILFLIHQHFENK----NLIELTRK 71

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRN-LKKSNSLP 126
           +IR      +   + +  +   +S ++S L++           +    +R   K      
Sbjct: 72  DIRNLSIIFQELGMSNARMNGLMSALRSALEFCADDDDYDYEFNVGSRVRGLPKNPVREI 131

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             + E+Q   L+D +L       K      +  L L Y    R +E   +  + + +   
Sbjct: 132 TFITEEQIEWLIDELL-------KQEKYMLATYLALSYYSAARKNEVYQVQKEELTERYF 184

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           T  ++GK  K   +   P V+K I  Y +    D   ++ + +++    K LN  VF  +
Sbjct: 185 TNVVRGKRGKKFRLYYNPRVQKCIRLYINQRGKDTIPDLFVRVYKNGGRKLLNKSVFNYW 244

Query: 247 IRQLRRYL----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            +   + L    G       H  RHS   +L   G  L  ++S+  H  +STTQ Y  
Sbjct: 245 CKIFAKMLYEKEGKEFKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSYLK 302


>gi|254478334|ref|ZP_05091713.1| site-specific recombinase, phage integrase family
           [Carboxydibrachium pacificum DSM 12653]
 gi|214035692|gb|EEB76387.1| site-specific recombinase, phage integrase family
           [Carboxydibrachium pacificum DSM 12653]
          Length = 373

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 58/336 (17%), Positives = 123/336 (36%), Gaps = 43/336 (12%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           E N   E     L +    WL+ +  E   +  TL S +     ++I    + E      
Sbjct: 52  EKNEFIEPSKITLQQFINEWLK-IYGEPKWAPKTLVSNKSLIDNYIIPNLGHIE------ 104

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            +++L   EI+ F +  + +++ + ++      +   LK+  K +   ++    +   KK
Sbjct: 105 -LQKLKPVEIQKFYNSLKEKQLSNTTINYVHRLLNQVLKFAVKWQYIAKNPCELVEAPKK 163

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
                      + +T     +       K        ++ L    GLR+ E   L  ++I
Sbjct: 164 DKK--------EFVTWNFEHVKKAKKIFKDTPIYIHVMIAL--YTGLRLGEICGLRWEDI 213

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGI 233
                T+ ++    +I    +           +         +   + N  +Q  L  G 
Sbjct: 214 DFKNQTITVRRTAQRIDGRFIFKEPKTETSKGIISIPDFLVQILKQEKNKQLQNKLIFGE 273

Query: 234 RGKPLNPGVF---------------QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
           +      G                 +++ + L++   +P+    H LRH+ AT +L +G 
Sbjct: 274 KYVTEYEGFISVWEDGRFKEPDYVTKKFRKILKKQSDIPV-IRFHDLRHTHATLMLRSGV 332

Query: 279 DLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           DL+ I   L H R+STT   Y++V+ +   + + ++
Sbjct: 333 DLKIISKRLRHGRISTTADFYSHVDLEMDREALRKL 368


>gi|330822190|ref|YP_004351018.1| Phage integrase family protein [Burkholderia gladioli BSR3]
 gi|327374342|gb|AEA65695.1| Phage integrase family protein [Burkholderia gladioli BSR3]
          Length = 611

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 74/396 (18%), Positives = 135/396 (34%), Gaps = 85/396 (21%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
                P I +   L     +L   + +      T ++Y  +  +F+++     E    + 
Sbjct: 225 RAPAFPYISAAHDLDAVFAYLHRYDGQ----AATQRAYWRELERFVLWC--VLERGRPMS 278

Query: 62  TIRQLSYTEIRAFIS----------KRRTQK---------IGDRSLKRSLSGIKSFLKYL 102
           +I        +AF++            R            +   S + ++  +++   +L
Sbjct: 279 SILVDDCEAYKAFLANPSDAFRGPPASRASGRWRPFALTPLSLDSQRYAVRTLRAAFDWL 338

Query: 103 KKRKITTESNILNMRNLKKSNS---------LPRALNEKQALTLVDNVLLHTSHETKWID 153
            K +    +  + + + K             LP  +  +    L D           W  
Sbjct: 339 VKVRYLAGNPWVAVTDPKPIKRATKLQVQRALPIDVWTRVRAELADRSEGFGPQGPDWRV 398

Query: 154 ARNSAILYLLYGCGLRISEAL--------SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           A   A++ L+   GLRI EA+            ++ +     LR+ GKG+K RIVPL   
Sbjct: 399 A--RALVLLMGDAGLRIEEAVTVERGGLQWWPAEDEIPATWMLRLVGKGNKERIVPLTED 456

Query: 206 VRKAILEYYDLCPFDLNLN----IQLPLFRGIRGKP---------------------LNP 240
             +A+ E++     DL+       +LPL       P                       P
Sbjct: 457 AVEALREHWQDRGLDLDAPGANADRLPLVSPTVVPPTPAGREKHGVTATGQVTRAAGYTP 516

Query: 241 GVFQRYIRQLRRYL--GLPL----------STTAHTLRHSFATHLLSNGGDLRSIQSILG 288
              +R + +    L   LP            T+ H  RH+F T  ++ G  +  +Q +LG
Sbjct: 517 RAARRVVTRALERLLGELPDLEESARRQLAQTSPHAFRHTFGTQSVAAGMAIEVLQQVLG 576

Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           H  L TT IY N   +     M +   + H  +T +
Sbjct: 577 HGSLQTTTIYVNAEQRR----MRQESAKYHARLTAR 608


>gi|325280655|ref|YP_004253197.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
 gi|324312464|gb|ADY33017.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
          Length = 405

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 122/291 (41%), Gaps = 22/291 (7%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLK 89
            + +T++ Y+   +  +  +    + KI    +R+++   +R F    +T+K     ++ 
Sbjct: 129 YADITVRRYDNCLKYLMELVKR--DYKIDDILLREVNGELVRKFDLYLKTEKHCAQNTVI 186

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R +   K  +      +  T++    ++  +   +  + L++ +      N +     + 
Sbjct: 187 RYMKCFKKVINLAIANEWLTKNPFAGIKFHEVEVN-KQFLSQSEI-----NRIWQKEFKI 240

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRIVPLLP--SV 206
           + ++      ++ +Y  GL   +  +L P++I +D    L I    +K   +  +P  S+
Sbjct: 241 ERLELVRDVFIFCVY-TGLAFIDVYNLHPEHISEDGNGNLWIVKPREKTNNLCNIPLLSI 299

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            K ILE Y   P+ ++    LP+    +           Y++++    G+  + T HT R
Sbjct: 300 PKQILEKYKDNPYCMDKGTLLPVPCNQKM--------NSYLKEIADLCGIKKNLTTHTAR 351

Query: 267 HSFA-THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           HSFA    L+N   L ++  +LGH     TQ Y  V  +     M  + +Q
Sbjct: 352 HSFASVIALANNVSLPNVAKMLGHSSTRMTQHYAKVLDQTILRDMQAVEEQ 402


>gi|300727313|ref|ZP_07060727.1| mobilizable transposon, int protein [Prevotella bryantii B14]
 gi|299775357|gb|EFI71953.1| mobilizable transposon, int protein [Prevotella bryantii B14]
          Length = 365

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 57/298 (19%), Positives = 113/298 (37%), Gaps = 26/298 (8%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQTIRQLSYTEIRAFISK 77
           +++L+   +           Y+     F  F     +   I      +     +RA   +
Sbjct: 90  EDFLEYFRLNGDCHG---AKYQSSRLHFERFCKGQCKFRDINASLCERFRLYLLRAKGLQ 146

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALT 136
              +K+   S     +   S + +  +  I +E     +  +K ++ +P+  L+  +   
Sbjct: 147 HTKKKLSKNSASAYFNAFLSIVHFAYRDNILSEDYTTCIEKIKWNHDIPKEYLSSAEIKQ 206

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-LRIQGKGD 195
           L                    A ++ +Y  GLR S+ L+L  +NI  D+     I+ +  
Sbjct: 207 LASTPYDDNPD-------VYRAGMFSIY-TGLRRSDILALRWENIHHDRGRKAYIRFRIK 258

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R +  LP    AI              +  P   G     +   +   +I +      
Sbjct: 259 KTRTLIQLPLSLPAIRV------------LGDPKSEGKIFPMITESILTIHIPRWVSKAR 306

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +    T H  RH+FA  LL  G D+ +I ++LGH ++S+TQ Y  ++SK   + ++++
Sbjct: 307 IRKHITFHCFRHTFAMQLLDKGVDIYTIAALLGHKQVSSTQNYAKMSSKKMIEAIVKM 364


>gi|290958002|ref|YP_003489184.1| integrase [Streptomyces scabiei 87.22]
 gi|260647528|emb|CBG70633.1| putative integrase [Streptomyces scabiei 87.22]
          Length = 405

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 65/341 (19%), Positives = 113/341 (33%), Gaps = 65/341 (19%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+ + +   L + T   Y    R        +    +  + + +L+  ++R F+   RT
Sbjct: 65  WLEGVAVH-HLRENTHTRYAASIR-------LHLNPGLGAKKLARLTTRDVRTFLDGLRT 116

Query: 81  ------------------------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
                                   +++   ++    + +KS L++         +   N+
Sbjct: 117 TCQCCAQGRDTDRRSCCAIGQCCEKRLSPLTVTYVHAVLKSALEHAVHEDELPRNVARNI 176

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           +         + L   +A  L+                R  A+  L    GLR  E L L
Sbjct: 177 KTTAPRPRRFQPLTATEARQLLQA----------ANGDRLHALYELALRTGLRKGELLGL 226

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--------------- 221
             +++  D  T  I     + R   L     K +     +                    
Sbjct: 227 HWEDVDLDGGTATIHRSLQRTRSQGLTVLNTKTLASERRIALPTECLSSLKIHQEQQQEE 286

Query: 222 ------NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
                 N      +F   +GKPL+P    R  R+L    GL  +   H LRHS AT LL 
Sbjct: 287 RQAAGTNWADNGLVFTTPKGKPLDPTNLTRRFRRLLHSSGL-RTIRFHDLRHSTATLLLE 345

Query: 276 NGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYD 315
            G DL  I+ +LGH  +  T  +Y +V  +     +  + D
Sbjct: 346 QGIDLVVIKELLGHAHIGVTAGVYAHVRLRLQRQAINTLND 386


>gi|212702804|ref|ZP_03310932.1| hypothetical protein DESPIG_00836 [Desulfovibrio piger ATCC 29098]
 gi|212673666|gb|EEB34149.1| hypothetical protein DESPIG_00836 [Desulfovibrio piger ATCC 29098]
          Length = 447

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 84/212 (39%), Gaps = 26/212 (12%)

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
             +   K  +   R L++ +   L+           +        ++      GLR  E 
Sbjct: 227 RAIVLPKTDSRRLRVLSDTEITELL------AFRGRREEYGELHDMILFSLDTGLRAGEL 280

Query: 174 LSLTPQNIMDDQSTLRI---------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
           ++L  ++   D  T+R+           KG + RI+       +   E  ++    L   
Sbjct: 281 VNLRCESCDADSGTIRVLVGAKDSLRSTKGGETRIL----RAGRLYPESLNMLRERLGRL 336

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-------AHTLRHSFATHLLSNG 277
               LF G  G+  +     R +R++   LG     T        HTLRH+FAT +L  G
Sbjct: 337 KTGFLFPGPDGRERDANGLNRAMRRIMDKLGFNDGVTDPRNRVVWHTLRHTFATRMLEAG 396

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            D+ ++++++GH  ++TT+IY ++   +    
Sbjct: 397 LDIYALKTLMGHASVTTTEIYLHICDMDKRRA 428


>gi|186686835|ref|YP_001870028.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186469187|gb|ACC84987.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
          Length = 335

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 116/289 (40%), Gaps = 19/289 (6%)

Query: 20  NWLQNLEIER--GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            W++ LE  R   L+  + + YE + ++FL +   +  E +  + +  L    +R  I  
Sbjct: 37  RWVKVLEFLRSNNLAPNSRKLYERELKRFLAWSELHYHE-LRPRHLA-LYKEYLRDEIRT 94

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKR--KITTESNILNMRNLKKSNSLPRALNEKQAL 135
              + +   S+   ++ +KSF K++     +I + +  L ++  K      ++L  ++  
Sbjct: 95  DAGKPLSKSSINAGIAALKSFFKWMCYTYPEIISTNPTLGIKLEKVPLPPAQSLTPEEME 154

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            +   + L    + +     ++A++++L   GLR  E + L   +       L    K +
Sbjct: 155 QVWSALELLGETKQR-----DTALVHIL-SHGLRAGEVVQLNVGSFDGKLLFL-PDTKTN 207

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRG----KPLNPGVFQRYIRQL 250
           + R+VPL    R+ + +Y          L    PL          + L+       + ++
Sbjct: 208 EPRLVPLKKESREVLAQYLLTRQQSGEVLTSLSPLMISHHASYKGERLSYHGIYFAVEKI 267

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                +      H+ RH++AT LL  G D    + + GH      + YT
Sbjct: 268 GEIALIE-DLHPHSFRHTYATDLLLLGVDPSHARKLTGHQSEKAFRRYT 315


>gi|315441478|ref|YP_004074355.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315265133|gb|ADU01874.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
          Length = 370

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 58/324 (17%), Positives = 107/324 (33%), Gaps = 51/324 (15%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK--IGDRSLKRSL 92
           T+ +     R+F  F   +           Q +  +  AF S  R+        +L+   
Sbjct: 47  TILARASVVRRFGDFTGTHPW---------QWTAEDADAFFSSMRSGSSPKAVSTLRGYQ 97

Query: 93  SGIKSFLKYLKKRK-----------------ITTESNILNMRNLKKSNSLPRALNEKQAL 135
           + ++ F  ++  R+                 I  + N +      +  +  R L+  +  
Sbjct: 98  NALRLFCDFITDRRYGWAALCLERFGQPPAQILHDWNTVTHVTEFEGRAGRRPLSFDEVQ 157

Query: 136 TLVDNV--LLHTSHETKWID----ARNSAILYLLYGCGLRISEALSLTPQNIMDDQ---- 185
            L D    L+  +            R++A+L  +Y  GLR  E + L   ++  +     
Sbjct: 158 ELFDAADGLVEAARSRHRKGSLSALRDAAMLKTVYAYGLRRQEVVGLDIVDLRSNPKVPA 217

Query: 186 ----STLRIQG---------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
                 L ++          K   +  VP +  +   +  Y               L+  
Sbjct: 218 YGRFGGLFVRHGKGSHGDAPKRRTVLTVPEMDWIVGVLEHYVAEVRPCFQPGRHPGLWIT 277

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
            R   L+           R   GLP     H+LRHS+ THL       R +Q  +GH   
Sbjct: 278 ERQGRLSKRSANEAFTAARDAAGLPKELDLHSLRHSYVTHLTEFDYPERFVQDQVGHAYA 337

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQ 316
           STT IY++V+ +     +     +
Sbjct: 338 STTSIYSHVSDEYRNRLLRAALTK 361


>gi|304382835|ref|ZP_07365318.1| integrase [Prevotella marshii DSM 16973]
 gi|304336020|gb|EFM02267.1| integrase [Prevotella marshii DSM 16973]
          Length = 410

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 59/283 (20%), Positives = 105/283 (37%), Gaps = 24/283 (8%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKS 97
           Y    +Q   F+  +   K+   T  Q+    +  F    +++         R    +K 
Sbjct: 144 YRNTRKQLSRFILNHY--KVKDLTFTQIEDDFLDNFQHYAKSKLGYSQAYFCRLAQLVKK 201

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
             K      IT    +  ++  K    +PRAL++     L    L     E +       
Sbjct: 202 TCKMAFNEGITERPILDFVKIEKGDAKMPRALDKASFEKLQSLKLNEYEKELETA----R 257

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDD---QSTLRIQG-KGDKIRIVPLLPSVRKAILEY 213
            +       G+   + + L  +++  D   +S L+ Q  K D +  V LLP     I +Y
Sbjct: 258 NLFLFSCYTGVSYCDMMCLNQEHLFLDDEGKSWLKFQRQKTDSLSRVKLLPEAEHIIEKY 317

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                   +   +  LF  I         ++  ++ L+   G+ +  TAH  RHSF T  
Sbjct: 318 --------SSEERDTLFPNIPYT-----TYRYLLKGLQHRAGITIPITAHLARHSFGTLT 364

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           L  G  + SI  ++GH  +++TQIY  +  +     M  +  Q
Sbjct: 365 LEAGIPIESIAKMMGHSSIASTQIYAQITDQKISSDMDRLIQQ 407


>gi|299535547|ref|ZP_07048868.1| integrase/recombinase [Lysinibacillus fusiformis ZC1]
 gi|298728747|gb|EFI69301.1| integrase/recombinase [Lysinibacillus fusiformis ZC1]
          Length = 330

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/295 (18%), Positives = 115/295 (38%), Gaps = 30/295 (10%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GL + T+  YE     F+         K  ++ +  +    I  ++ +    K+ D + +
Sbjct: 52  GLRERTIHDYETYVNDFV--------RKTDVEYLLAIDADAIYEWLGQM---KVKDTTKR 100

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             L    +FL          +    N+ N++ +  +     E     ++  + L     +
Sbjct: 101 VRLKCFCAFLGKCFNNGWLNDMFWRNI-NIRVNEPIKLGATEDDVFNVLRQLDL-----S 154

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK- 208
            +I+ R++A +  +Y  G+R++   +L  +++  +   LRI G   K R V LLP  ++ 
Sbjct: 155 NFIELRDAAAILTMYQTGIRLATLSALEERHVDLENRLLRIDGALLKNRKVILLPFDKRL 214

Query: 209 ----AILEYYDLCPFDLNLNIQLPLFRGIRGKPL------NPGVFQRYIRQLRRYLGLPL 258
                +L   +    +        +F   +GK +            + +   +R  G+  
Sbjct: 215 QKIFEVLFNQNSIIREEKGIENNFVFLTHQGKGIVNDESPKSNAIAKRLNYYKRKYGIE- 273

Query: 259 STTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           +   H LR  FA  +   + GDL  +   LGH   + T  Y +++ +   D + E
Sbjct: 274 NINPHALRRGFAKDIYKRSNGDLALVSKALGHSDFAVTARYLHLDPEEVADKLRE 328


>gi|41408246|ref|NP_961082.1| hypothetical protein MAP2148 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41396601|gb|AAS04465.1| hypothetical protein MAP_2148 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 227

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 56/214 (26%), Positives = 85/214 (39%), Gaps = 9/214 (4%)

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S  R L  +K + K+L      +   +L ++  K    +  AL E Q   L+        
Sbjct: 2   SKSRDL-ALKRYAKWLVDEGELSSDPLLGLKPPKGDQKVVNALTEDQLKRLI-----AAC 55

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205
                +D R+  I+ L+   GLR +E LSL   ++  D   + I +GKG K R+ P    
Sbjct: 56  QGKSLMDRRDETIVRLMAETGLRANETLSLQITDVNLDAGIVTIVRGKGGKGRVSPFSVQ 115

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              AI  Y         L+    L+ G  GK L      + ++Q     G+  +   H L
Sbjct: 116 TATAIDRYLRAR-RAHRLSNTGALWLGGGGKSLGYYGLSKALKQRATAAGIE-TFHLHML 173

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           RH+ AT  L  GG    + S+ G    S    Y 
Sbjct: 174 RHTAATRWLRAGGSESGLMSVAGWKNRSMIDRYV 207


>gi|309778436|ref|ZP_07673351.1| transposase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308913799|gb|EFP59624.1| transposase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 397

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 102/298 (34%), Gaps = 34/298 (11%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           +Q    +    E+K+  ++I  +  ++ + +  + + +     ++      +K+      
Sbjct: 104 KQREQLMRLLKEDKLGARSIDTIKLSDAKEWALRMKDKGFSYNTINNYKRSLKASFYIAI 163

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           +     ++      + K S  L     EK ALT      L +  +T  +  +    + +L
Sbjct: 164 QDDCVRKNPF----DFKLSEVLENDTKEKVALTEEQEQALLSFIKTDNVYHKYYDDVLIL 219

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVR 207
              GLRISE   LT  +I      + I                       R VPL     
Sbjct: 220 LKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGYYIETPKTKSGTRQVPLSKETI 279

Query: 208 KAILEYYDLCPFDLNL---NIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGL 256
           +A        P             LF   +GKP        L   + ++Y +        
Sbjct: 280 QAFQRVMKKRPKTDPFVIDGRGNFLFVNPKGKPKVAIDYSTLFVRMVKKYNKHHMD--NP 337

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
               T HTLRH+F T L S   + + +Q I+GH  +S T   Y + +       +  +
Sbjct: 338 LPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQRL 395


>gi|283797399|ref|ZP_06346552.1| putative integrase [Clostridium sp. M62/1]
 gi|291074952|gb|EFE12316.1| putative integrase [Clostridium sp. M62/1]
          Length = 408

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/329 (15%), Positives = 102/329 (31%), Gaps = 58/329 (17%)

Query: 11  SFELLKERQNWLQNLE--IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           S  L     NWL+  +  + R     T   Y+            + E  +  + ++ ++ 
Sbjct: 65  SLTLSVWFDNWLEIYKYNVIR---DNTRVYYK-------QVFKKHIEPLLGHKRLKDITQ 114

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             IRA + +   Q +  ++  +    +               +    +R  K +    R 
Sbjct: 115 LHIRALLKELDKQGLQFQTQNKVRVMLLDMYNKAILDNYAVRNPAKGIRLPKHNKRNKRV 174

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
            + ++ +   D                   +  +    GLR  E  +LT  +I  ++  +
Sbjct: 175 FSVEEQIDFFDCCKGTFYDN----------LFTVAVNTGLRQGELCALTWDDIDLEKKEI 224

Query: 189 RIQGK---------------------GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
            ++                           R VP+      A+ +        ++     
Sbjct: 225 NVEKTLLYQKLEGDTGKTFHINPPKTKTSNRKVPINKQCEIALKKQLIQRNNIISRQSAK 284

Query: 228 P-------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS-------TTAHTLRHSFATHL 273
           P       LF      P+   +    I+++   +    S        T H  RH+FAT  
Sbjct: 285 PEKGFENLLFTTKYATPICDQILIDAIKKIVNEINSVRSEIEQFEMFTPHCFRHTFATRC 344

Query: 274 LSNGGDLRSIQSILGHFRLSTTQ-IYTNV 301
              G   + IQ+ LGH  L  T  +YT+V
Sbjct: 345 FEAGISPKVIQTYLGHSTLQMTMDLYTSV 373


>gi|219856542|ref|YP_002473664.1| hypothetical protein CKR_3199 [Clostridium kluyveri NBRC 12016]
 gi|219570266|dbj|BAH08250.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 204

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 79/193 (40%), Gaps = 8/193 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L +++A +L   +     +       R+  I  + Y CGLR+SE   L  Q+    + 
Sbjct: 15  KYLTQQEAYSLFKTI----ENTYTSHSLRDLVIFRIAYRCGLRVSEIALLKMQDYNASKG 70

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            L  +           L S  K IL+ Y +       +    LF   +  P++       
Sbjct: 71  ELYCRRLKGSNNNTLRLDSKTKYILDKYIVENNI--TSTSQVLFSSQKNNPISRQTLDYL 128

Query: 247 IRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           +++     G+   +    H L+H+ A HL  +  D++ +Q  LGH  +S T+IY    +K
Sbjct: 129 MKKYCSMAGIEDKSKHHFHALKHTTAVHLAESDMDIKELQWWLGHKSVSNTEIYFQFTTK 188

Query: 305 NGGDWMMEIYDQT 317
                  ++ +++
Sbjct: 189 QQDRMYAKLDEKS 201


>gi|158339787|ref|YP_001520794.1| tyrosine recombinase XerC, putative [Acaryochloris marina
           MBIC11017]
 gi|158310028|gb|ABW31644.1| tyrosine recombinase XerC, putative [Acaryochloris marina
           MBIC11017]
          Length = 360

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 68/307 (22%), Positives = 119/307 (38%), Gaps = 39/307 (12%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIF--------------------------LAFYTE 55
           L+ + +E+     T + Y  D   F +F                          L+  ++
Sbjct: 32  LRAVLVEKTK-PSTREGYTKDLVDFFLFVTQGESVYEIEGPKRKSEIKAQVKGELSRLSQ 90

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
             + I  ++ L       +      + +   ++ R LS +KS ++ + +R    +  +  
Sbjct: 91  SFVGIGRLKALELAA--RYRECMMQRGLQANTINRRLSAVKSMVR-MARRLEMCDWTLAE 147

Query: 116 MRNLKK-SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           +  L        R +   Q   ++  V     +      AR+ A+L LL+  GLR SE +
Sbjct: 148 VDGLTVNPYRDTRGITASQFRLMMVFV-----NRFSLAGARDFAMLTLLWEAGLRRSELV 202

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIR-IVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRG 232
               ++   +Q  L I GKG   R  + L  S   AI E+ +    + L   + + L R 
Sbjct: 203 GCDVRHFDSEQKRLSILGKGRNEREWIDLTESGVLAISEWLEKREVYALTEPLFISLDRA 262

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFR 291
             G  L+     R +R L +  G+  +   H +RHS  T  L   GGDLR  Q+   H  
Sbjct: 263 NWGSRLSGTSVYRIVRALAKKAGVSENFGPHKIRHSGTTTYLEMTGGDLRGAQAYSRHAN 322

Query: 292 LSTTQIY 298
           L+T + Y
Sbjct: 323 LNTLKFY 329


>gi|186683356|ref|YP_001866552.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186465808|gb|ACC81609.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
          Length = 298

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/295 (17%), Positives = 115/295 (38%), Gaps = 14/295 (4%)

Query: 27  IER-GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           +ER GL+  T++SYE      L     +        ++  +    +  +++      +  
Sbjct: 13  LERHGLANSTIRSYESTLMPLLQLYGSW--------SLEIIDREILVEYLNNL--NNVSY 62

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            +  R  + I +   +  + +    + I +++  +K N      N    +  +    L  
Sbjct: 63  ITHHRHQAVITALFNFAVEYRYIKSNPISHLKR-RKPNPRIGEHNSDSVVRYLTQHQLSI 121

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
            ++    DAR +A+++LL+  G RI+E L+L   +I     + ++ GKG+K R       
Sbjct: 122 LYQAIKKDARLNALVHLLHSSGARIAEILALDLSDIDFTARSFQVIGKGNKQRWCFYNED 181

Query: 206 VRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
               +  Y        +N           +   L+       +    + +        H 
Sbjct: 182 TDFCLNNYIKYYRHPQINALFTAQKPNNQQVSRLSYATAYSTLVNSAKNIPELEGVGFHQ 241

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           LRH+FA+  +   G +  +++++GH ++ TT  Y+ V S    +  +  + +  P
Sbjct: 242 LRHTFASQRVGIMG-VEELRALMGHEKIQTTLRYSKVTSLRAQEVALHAFKKIPP 295


>gi|89147377|gb|ABD62549.1| integrase [uncultured bacterium]
          Length = 163

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/111 (33%), Positives = 54/111 (48%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +G G+      L     +A  ++     F        P    +R    +P   Q+     
Sbjct: 52  KGHGEVWIWESLARKYPQAARDWGWQWVFPSERLSVDPRSGKVRRHHTHPNSLQKAFHDA 111

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            R  G+    + H+LRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 112 VRQAGVTKPASCHSLRHSFATHLLENGYDIRTVQELLGHSDVSTTMIYTHV 162


>gi|325956998|ref|YP_004292410.1| integrase [Lactobacillus acidophilus 30SC]
 gi|325333563|gb|ADZ07471.1| integrase [Lactobacillus acidophilus 30SC]
          Length = 373

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 89/278 (32%), Gaps = 23/278 (8%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
             S  T   Y  +      +        +TI+ I +  Y E   F +K+        ++K
Sbjct: 85  NCSPATSTKYNYEINLVRNYFG-----DLTIKDITRTKYQEFINFTAKKH----APVTVK 135

Query: 90  RSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           +    +++ +       + +      + +   K        LN ++   L    + +   
Sbjct: 136 KLNGSVRACVNSAIIDGLISADFTKQVQVHGNKDKELAVTYLNIEEIKRLTQTTISNLD- 194

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
               I   +  ++      G R+ E   L   +I    + + I    +  R        +
Sbjct: 195 ----ITIPSRYMVLTAIFTGARLGEISGLQWNDIDFANNIIDINKSWNWQRKRMGPTKNK 250

Query: 208 KAILE-----YYDLCPFDLNLNIQLPLFRGIRGKPL--NPGVFQRYIRQLRRYLGLPLST 260
            +I +     +      DL  N    +F       L          +R L +   +    
Sbjct: 251 SSIRKIKVNDFLLERLNDLRANNCKFVFGNPAENNLPPTSATANSTLRSLLKDANINKDI 310

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             H+LRH    +L+    D+ +I   LGH  ++TT  Y
Sbjct: 311 HFHSLRHIHVAYLIKKHVDIVAISQRLGHSNVATTLKY 348


>gi|302345845|ref|YP_003814198.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302149964|gb|ADK96226.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 418

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/304 (18%), Positives = 111/304 (36%), Gaps = 25/304 (8%)

Query: 16  KERQNWLQNL-EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           + +QN+++   ++     + +  S + +  +  + L  +  + +    I      + + F
Sbjct: 125 RLQQNFIKYFDKVADKRHRNSSLSIQTNWERVHVLLKMFAGDTLLFSQIDNRLAEDFKFF 184

Query: 75  ISKR-----RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +        +   I   +     S  K+ LK        T      ++ +++  S    L
Sbjct: 185 LLSAPCGGSKKGTISRNTASTYFSIFKAALKQAFIDGYLTIDLSAKIKGIQEQESRREYL 244

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              +      N L +T  E   +  + +A+   L   GLR  +   L    I  + +  +
Sbjct: 245 TLDEL-----NKLANTPCERDVL--KRAALFSAL--TGLRHCDIQKLKWDEIAIEGNQAK 295

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           +     K + V  +P   +A     +    +  +   LP          NP    R +R 
Sbjct: 296 LLFTQKKTKGVEYMPISEQAFKLCGEPRQPEQLVFEGLP----------NPSWISRPLRA 345

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+    + H  RH+FAT  L+NG D+ ++  +LGH  + TTQ+Y  V  +     
Sbjct: 346 WIEKAGIQKHLSFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKVVDEKKNKA 405

Query: 310 MMEI 313
              I
Sbjct: 406 ANAI 409


>gi|167036461|ref|YP_001664039.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320114886|ref|YP_004185045.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166855295|gb|ABY93703.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319927977|gb|ADV78662.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 373

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 58/336 (17%), Positives = 123/336 (36%), Gaps = 43/336 (12%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           E N   E     L +    WL+ +  E   +  TL S +     ++I    + E      
Sbjct: 52  EKNEFIEPSKITLQQFINEWLK-IYGEPKWAPKTLVSNKSLIDNYIIPNLGHIE------ 104

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            +++L   EI+ F +  + +++ + ++      +   LK+  K +   ++    +   KK
Sbjct: 105 -LQKLKPVEIQKFYNSLKEKQLSNTTINYVHRLLNQVLKFAVKWQYIAKNPCELVEAPKK 163

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
                      + +T     +       K        ++ L    GLR+ E   L  ++I
Sbjct: 164 DKK--------EFVTWNFEHVKKAKKIFKDTPIYIHVMIAL--YTGLRLGEICGLRWEDI 213

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGI 233
                T+ ++    +I    +           +         +   + N  +Q  L  G 
Sbjct: 214 DFKNQTITVRRTAQRIDGRFIFKEPKTETSKGIISIPDFLVQILKQEKNKQLQNKLIFGE 273

Query: 234 RGKPLNPGVF---------------QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
           +      G                 +++ + L++   +P+    H LRH+ AT +L +G 
Sbjct: 274 KYITEYEGFISVWEDGRFKEPDYVTKKFRKILKKQSDIPV-IRFHDLRHTHATLMLRSGV 332

Query: 279 DLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           DL+ I   L H R+STT   Y++V+ +   + + ++
Sbjct: 333 DLKIISKRLRHGRISTTADFYSHVDLEMDREALRKL 368


>gi|56550607|ref|YP_161673.1| Tn554 transposase A [Cupriavidus metallidurans CH34]
 gi|94152659|ref|YP_582061.1| phage integrase [Cupriavidus metallidurans CH34]
 gi|56410313|emb|CAI30195.1| hypothetical transposase A from transposon TN554 [Cupriavidus
           metallidurans CH34]
 gi|93359025|gb|ABF13111.1| tyrosine-based site-specific recombinase activity site-specific DNA
           recombination [Cupriavidus metallidurans CH34]
          Length = 381

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 58/344 (16%), Positives = 115/344 (33%), Gaps = 71/344 (20%)

Query: 13  ELLKERQNWLQNLEIERGL--SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           EL+     +L+ +   +G   +  T ++Y     +F  FL      +       ++  ++
Sbjct: 29  ELVDAPNRYLRYIATVKGRTRAANTWRTYGAALYEFFAFL------EANGLAWDRVDQSQ 82

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLK------ 120
           I A+      +     ++ + L  + +F  + K   +T           +   +      
Sbjct: 83  IAAWRDTMLERGCARSTVNQRLRTVDAFYNWAKSNGMTHSIPFDRTDVWVAKPRGFLAHV 142

Query: 121 ---------------KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
                               P+ L+  +A+  +D               R   + YL   
Sbjct: 143 DASGDRFEANSLTVQTHKVTPQFLHLDRAIRFLDA----------LTPYRMRLMGYLALL 192

Query: 166 CGLRISEALSLTPQ-----NIMDDQSTLRIQ-------GKGDKIRIVPLLPSVRKAILEY 213
            G+R  E +S+  +        D    + +         KG+K R V L   +  A+ +Y
Sbjct: 193 TGMRREEVVSMDCRVLPNPAGRDSNKQIPMHLDPSITPTKGEKDRTVMLPYDLAVALYQY 252

Query: 214 YDLCPFDLNLNIQLP-------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           +      L    +         LF    G PL+        R++ +  G+    T H LR
Sbjct: 253 FTFERSRLLAKHRAKFGIETTLLFLSQTGDPLSVNGLNNAFRRVSQKTGI--WCTPHMLR 310

Query: 267 HSFATHLLS-------NGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           H+F T+ L            L  ++  +GH  ++TT+IY +   
Sbjct: 311 HTFGTYELMRMSRQKTQTQALLWVRDRMGHNSITTTEIYVHAAD 354


>gi|10957411|ref|NP_051636.1| integrase/recombinase XerD, putative [Deinococcus radiodurans R1]
 gi|6460840|gb|AAF12544.1|AE001826_13 integrase/recombinase XerD, putative [Deinococcus radiodurans R1]
          Length = 344

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 54/288 (18%), Positives = 101/288 (35%), Gaps = 37/288 (12%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  T+++Y      FL +      + +  +    +      A+      Q     +++  
Sbjct: 84  SHHTIRAYRKGLDVFLGYAQQVGLQLLRPRPNHGV------AYARWLEAQGYNTSTVRVR 137

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRN-----LKKSNSLPRALNEKQALTLVDNVLLHTS 146
           L+  +     L+    T  +   ++R       +     P   +E +   LV    L   
Sbjct: 138 LAAARKLFAALRWAGATDATPFADVRPAPDPVPRTEKRKP--YSETEVEELVRAGDLEE- 194

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLP 204
                       IL L    GLR+SE   L   ++  D     L + GK  K + VPL  
Sbjct: 195 ----------KVILLLGAHAGLRVSEIAGLQRVDVHLDGEHPYLMVTGKHQKRQGVPLSR 244

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAH 263
           ++ KA+  +      DL   +             +    Q  ++ +    G+P      H
Sbjct: 245 TLAKALSLWLS-ATPDLGPRVLSAG---------SVDYVQGRVKAVCERTGVPYSRRQVH 294

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            LRHS  T + S+  DL +++  L H  +++++IY     K     + 
Sbjct: 295 GLRHSAGTRIYSDTSDLLAVRDHLRHADITSSEIYVEYARKTKAPAVK 342


>gi|270294597|ref|ZP_06200799.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270276064|gb|EFA21924.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 408

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 121/312 (38%), Gaps = 32/312 (10%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + +LQ +++    +  T   YE   ++ + F+ F     ++   I+ ++   I  F+
Sbjct: 115 QHNEQYLQKVKM--NTADKTYSRYELTKKRLMEFMKFKY--SVSDMLIKDINVVFIEDFL 170

Query: 76  SKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
              +        +  + +   ++ + + K   + T     + R ++   +    L  ++ 
Sbjct: 171 LYIKNNYGCSHNTAMKFVQRFRTVVNFAKNTGLVTADPFGSYR-VRFERTDRDYLTMEEI 229

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRI 190
            T+ ++        +K ++      ++  Y   L   +   L  ++       +   +R 
Sbjct: 230 TTIYNH-----EFSSKRLEQVRDLFIFSCY-TALSYIDVCELKQEDIRTGFDGNLWIIRK 283

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           + K +    V LL   +  + +Y            +  L  G     ++      Y++++
Sbjct: 284 RHKTNVTSTVRLLDIPKAILEKY------------KDKLPNGKILPVISNQKMNDYLKEI 331

Query: 251 RRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNS---KNG 306
               G+  + T H  RHS AT  LL+NG  + ++  ILGH  + TTQIY  + +    N 
Sbjct: 332 AAICGIEKTLTYHVARHSCATSVLLANGVPIETVSKILGHTNIRTTQIYARITNLKVSND 391

Query: 307 GDWMMEIYDQTH 318
            + + +  D  H
Sbjct: 392 MEMLAQKLDAAH 403


>gi|255973229|ref|ZP_05423815.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|255964247|gb|EET96723.1| conserved hypothetical protein [Enterococcus faecalis T1]
          Length = 376

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/302 (17%), Positives = 111/302 (36%), Gaps = 40/302 (13%)

Query: 42  DTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY 101
           D R+ + F   Y  +      +++L+  E +  ++    +     S+K+  + +++ LK 
Sbjct: 85  DIRRAVDFSEKYFPD----TKLKELTRQEYQKALND-YGETHATASVKKHHTYMRAALKD 139

Query: 102 LKKRKITTESNILNMRNLKKSNSLP---RALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
             +  I        ++ + K N      + LN ++++ LV  +L     E       +  
Sbjct: 140 ALEEGIIHRDPTYRVQAIGKKNPKHEELKYLNYQESIHLVHEIL-----EGIKPTYTSRF 194

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-------------- 204
           I+      G R SE + +T   I     T+++    D                       
Sbjct: 195 IILFGIATGCRFSEIIGMTWDCIDFKNKTVKVNKTWDYKYTNTFSNTKNYQSKRIITIDD 254

Query: 205 ---SVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
               + K +  +         L  +  L F     + ++     + +R+  R +G     
Sbjct: 255 DTLDLLKKLQLHQKEYYLKSGLRNENNLVFLNDNMELVSNTAVNKVLRKFCRKIG-TKEL 313

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGG-------DWMME 312
           T H LRH+ A+ +L  G +++ +   LGH  + TT Q Y ++  +          + M +
Sbjct: 314 TCHGLRHTHASIMLYKGINIKYVSRRLGHKDIVTTLQTYQHILDEMEQKESNAVNEVMKQ 373

Query: 313 IY 314
           +Y
Sbjct: 374 MY 375


>gi|189462732|ref|ZP_03011517.1| hypothetical protein BACCOP_03429 [Bacteroides coprocola DSM 17136]
 gi|189430601|gb|EDU99585.1| hypothetical protein BACCOP_03429 [Bacteroides coprocola DSM 17136]
          Length = 387

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/290 (18%), Positives = 101/290 (34%), Gaps = 27/290 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           KE + + +   + +  SK T Q Y    +    F+  +   K T   + +L+   IR + 
Sbjct: 116 KENEAFAK--RVGKDRSKRTYQKYLTVRKYVAEFITRHY--KRTDMAMNELTEDFIRDYC 171

Query: 76  SKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
              R +  +   S+      +K  +           +    M ++   +     L E + 
Sbjct: 172 LYLRNEVGLAQSSVWIYSIPLKHIVTTAHYNGKIPRNPFA-MYHVDPDHKERGFLTENEI 230

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---Q 191
             L    L           A    +       G+  ++  +LT  NI++   T  I   +
Sbjct: 231 QALSAIKL------DNPNFALARDLFLFGCWTGISFTDIKNLTTDNIVEMNGTPWIVSKR 284

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            K      + L+    + I  Y          NI             +  +  + I+ + 
Sbjct: 285 QKTGVPFQIKLMDIPMQIIRRYEPFRRDKRLFNIG------------SLDMVNKRIKAVA 332

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  G+    + H  RHSFA   L+ G  + S+  ILGH  ++TTQIY   
Sbjct: 333 KKCGIEKPISFHLSRHSFAVLALNYGMPIESVSKILGHTNITTTQIYARA 382


>gi|229096923|ref|ZP_04227892.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock3-29]
 gi|228686533|gb|EEL40442.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock3-29]
          Length = 368

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 94/273 (34%), Gaps = 31/273 (11%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           +   T  +L+  +I+ F     T K+ +  +      + + L     + + T +      
Sbjct: 100 LGKNTFNKLNVIQIQQFYRNL-TGKLSNSRIILIHRVLNTALNQAIAQNLITTNPAKFAA 158

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             KK  +  +   E++  T     LLH+ +              L    G+R+ E L L 
Sbjct: 159 KPKKERTSIQTWTEEEVKTF----LLHSQNSRYHTG------FILAITTGMRLGEVLGLR 208

Query: 178 PQNIMDDQSTLRIQGKGDKI-------------RIVPLLPSVRKAILEYYDLCPFDLNLN 224
            Q++  D  T+ I                    R +P+      A+ +++     +    
Sbjct: 209 WQDVDFDNHTVTINQTLGHDNKIKQSAKTSSSKRTLPIPIETINALKKHHLFIKKEKLRF 268

Query: 225 IQLPLFRGIRGKPLN-----PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
                   +    ++        F++    + +   +P     H LRH+ AT LL  G  
Sbjct: 269 GNAYNDSNLIVCTMSGNIVYRDYFRKSYYTIIQKANVPK-IKFHDLRHTHATLLLKQGVH 327

Query: 280 LRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMM 311
            + +   LGH  +S T  +Y++V      D + 
Sbjct: 328 PKIVSERLGHSNISMTLSVYSHVLPNMQEDAVK 360


>gi|320353406|ref|YP_004194745.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320121908|gb|ADW17454.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 350

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 56/317 (17%), Positives = 124/317 (39%), Gaps = 24/317 (7%)

Query: 1   MEGNNL--PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI 58
           M+      P      L +    +L+ +  ++ L           T++    +A   +EK 
Sbjct: 48  MKNQRFKDPRRAHRTLDEAFDRYLETVTSQKAL----------TTQERERRIAKLLKEKF 97

Query: 59  TIQTIR-QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNM 116
              T+   ++ + +  +   +R + +   +++  L+ +        K  ++  E+ + ++
Sbjct: 98  GRNTLLPDITPSVVAKY-RDQRLKSVSAYAVRLELALLSHLFIKACKEWELPIENPVKSI 156

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              K        L E +A+ L+       +             + +L    +R SEA  L
Sbjct: 157 ERPKVPKGRIFFLKEDEAVRLLKECKASRNKRLYPY-------VLILLHTAMRPSEAAGL 209

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
               I  D+ +L +    ++ R VPL  +V  A+ +       +  + ++    +    +
Sbjct: 210 KWHQIDFDRRSLTLYITKNEPRTVPLTKTVITALEDLKKTAFDNEFVFLKGE-GKSQHAQ 268

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            +    F+    + R    LPL    H LRH+ A+ +L  G D+R++ +ILGH  L    
Sbjct: 269 NIPSSRFRPSFDRARERAKLPL-LHMHDLRHTAASQMLMAGTDIRTLAAILGHSTLQMVL 327

Query: 297 IYTNVNSKNGGDWMMEI 313
            YT++ +++    +  I
Sbjct: 328 RYTHLLNEHKLKAVDRI 344


>gi|326789971|ref|YP_004307792.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326540735|gb|ADZ82594.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 407

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 105/296 (35%), Gaps = 34/296 (11%)

Query: 48  IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI 107
           I+  +     +  + +  +    I+++ +    Q     ++K     +K+ L    K+  
Sbjct: 110 IYRNYIKGSALGKRKLVDIRTAHIQSYYNALAEQGKTTNTIKVLNKTLKTCLNDAVKQGY 169

Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
              +    +   K   +   A  +K             +        +N  +  L  G G
Sbjct: 170 IVRNYCSLVTMPKCEGA---AGTDKDNDITFFTPEEQKTFIGSLEKNKNRMLFILALGSG 226

Query: 168 LRISEALSLTPQNIMDDQSTLRIQG------------------------KGDKIRIVPLL 203
           LR+ E ++L   N+    +TL +                               RI+PL 
Sbjct: 227 LRLGELMALKWDNVDMVNNTLSVTHAISRLSKVGKDGSRTWSVLEHDPKTKSSTRIIPLP 286

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
             + K + ++       +     L      +F    G  L+     R   +     G+  
Sbjct: 287 TKIIKELKKHKAEQDKLILKYGDLYQKNNLVFCTDLGGYLDTRNLTRSYARALANAGIE- 345

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
               H++RH++AT L  N   ++++QS++GH  ++TT  IYT+V  +   D + ++
Sbjct: 346 HKKFHSMRHTYATRLFENDVPIKTVQSLMGHNDITTTMNIYTHVTPQQMTDEVQKL 401


>gi|158340586|ref|YP_001521580.1| tyrosine recombinase XerC [Acaryochloris marina MBIC11017]
 gi|158310827|gb|ABW32441.1| tyrosine recombinase XerC [Acaryochloris marina MBIC11017]
          Length = 348

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 65/306 (21%), Positives = 118/306 (38%), Gaps = 37/306 (12%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIF--------------------------LAFYTE 55
           L+ + +E+     T + Y  D   F +F                          L+  ++
Sbjct: 21  LRAVLVEKTK-PSTREGYTKDLVDFFLFVTQGEMVYGVEGPKRKSEIKAQVKRELSRLSQ 79

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
             + I  ++ L       +      + +   ++ R LS +KS ++  ++ ++   +    
Sbjct: 80  SFVGIGRLKALELAA--RYRECMMQRGLQANTINRRLSAVKSMVRMARRLEMCDWTLTEV 137

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
                K     R +   +   ++  +     +      AR+ A++ LL+  GLR SE + 
Sbjct: 138 DGLTVKPYRDTRGITASKFRLMMVFI-----NRFSLAGARDFAMMTLLWEAGLRRSELVG 192

Query: 176 LTPQNIMDDQSTLRIQGKGDKIR-IVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGI 233
              ++   +Q  L I GKG   R  + L  S   AI E+  L   + L   + + L R  
Sbjct: 193 CDVRHFDSEQKRLSILGKGRNEREWIDLTESGVLAISEWLKLREVYALTEPLFISLDRAN 252

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRL 292
            G  L+     R +R L +  G+  +   H +RHS  T  L   GGDLR  Q+   H  L
Sbjct: 253 WGSRLSGTSVYRIVRALAKKAGVSENFGPHKVRHSGTTTYLEMTGGDLRGAQAYSRHANL 312

Query: 293 STTQIY 298
           +T + Y
Sbjct: 313 NTLKFY 318


>gi|53713278|ref|YP_099270.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52216143|dbj|BAD48736.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 409

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 60/296 (20%), Positives = 115/296 (38%), Gaps = 32/296 (10%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEIRAFISKRRTQ-KIGDRSLKRS 91
           TL+SY+     F   +  +   K  +  I  + L Y+ I AF    R Q K    ++   
Sbjct: 131 TLESYKRYGISF-NHVKRFLRAKYNLSDISFQALDYSFIEAFDFYLRVQLKFKPNTIIGI 189

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           +  +K  +K      I T +  +   +L+     P+++  ++   ++   L         
Sbjct: 190 VGHLKIIVKRAANDGIITRNPFIGF-SLEGEPLQPKSITGQELNKIMTTPL------DSP 242

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----QGKGDKIRIVPLLPSVR 207
                  +       G+  S+  +LT  N++  +  +      + K      VPLL    
Sbjct: 243 NRYLVRDMFLFSVFTGIAFSDIRNLTCNNLVQAEDGVWWIHSKRRKTGTEFHVPLLELPL 302

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + I +Y         LN    +F  +     N       ++++ +  G+  + T H  RH
Sbjct: 303 QIIEKYR-------GLNKDGKMFVMLSCSKTNGN-----LKKIAKICGIKRNITFHMARH 350

Query: 268 SFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM----EIYDQTH 318
           S+A+ + LS G  + ++  +LGH  L  T+IY  V+++     M      I D+ H
Sbjct: 351 SYASLITLSQGVPMETVSRMLGHRDLRATRIYAQVSNEKINTDMRRLEKRITDRYH 406


>gi|323485599|ref|ZP_08090940.1| site-specific recombinase XerD [Clostridium symbiosum WAL-14163]
 gi|323401069|gb|EGA93426.1| site-specific recombinase XerD [Clostridium symbiosum WAL-14163]
          Length = 317

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 54/285 (18%), Positives = 108/285 (37%), Gaps = 27/285 (9%)

Query: 46  FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR 105
           +   +  +    I    + +++   +  FI  R+++ +   +++  L  +KS ++  ++R
Sbjct: 40  YATIIQKHIRPSIGTVEMEEMNNEILSEFILDRQSRGLSANTMRLILFLLKSIIRAGERR 99

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
            ++     L+    K      + L++     L+  +    ++    +    S  +     
Sbjct: 100 GVSPAEP-LDFFLPKDRGYEMKLLSQDNRRKLLSWLAGCRTNFELGLLLSLSTGI----- 153

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
              R+ E   +  +++  ++  L I+    +IR      +  K +L             I
Sbjct: 154 ---RVGELCGVKWEDVDLEEGVLHIRRTVSRIRNTDQKNTAAKTVLYIGSPKTGTSQREI 210

Query: 226 QLPLF----------------RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
            LP F                   R   + P   QR  + L R L LP     H LRHSF
Sbjct: 211 PLPDFMIPRLKEKKREAGCYLLTGRTGCMEPRGVQRRFKNLLRKLRLP-DVNIHALRHSF 269

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
           A+  + NG D +S+  ILGH  +  T  IY + N      +M ++
Sbjct: 270 ASQWIENGFDSKSLSEILGHSSVKITMDIYVHSNMSQKKVYMDQM 314


>gi|301165214|emb|CBW24785.1| putative bacteriophage integrase [Bacteroides fragilis 638R]
          Length = 431

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 69/310 (22%), Positives = 119/310 (38%), Gaps = 31/310 (10%)

Query: 14  LLKERQNWLQNLE--IERG-LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           +LK+ +N  +  E  +E+G  +K T   Y      F  FL  + ++K T    ++L+   
Sbjct: 111 ILKDFENMNREFEAMVEKGQRAKSTYNKYLAVYNHFATFL--WEKKKRTDMAYKELTKEI 168

Query: 71  IRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           I  F    R  + + D +L      + S      +R I          +L+   +    L
Sbjct: 169 ITDFDKYLRVEKGLSDNTLWIYTMPLLSLTDKAWRRGIVRSDPFGEY-SLEMQETDRGYL 227

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ-----NIMDD 184
            E++  TL + V +      K        +       GL   +  +LT       +   +
Sbjct: 228 TEEELRTLANAVFV------KKQTNLVRDMFLFGCFTGLSYIDIKTLTHDKIQRMDFDGE 281

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
              +  + K      VPL+   ++ I  Y  L   D        +F        + G   
Sbjct: 282 DWIITRRTKTRVSSNVPLMEIAKELIERYKGLAGGDF-------VFPMP-----SNGTCN 329

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           ++++Q+ +  G+      H  RH+FAT   L NGG + ++  ILGH  +STTQIY  V +
Sbjct: 330 KHLKQIAKACGISKEIGFHLSRHTFATTVYLCNGGTIEALSKILGHKHISTTQIYAEVTN 389

Query: 304 KNGGDWMMEI 313
           K        I
Sbjct: 390 KMVSSDFRAI 399


>gi|293373295|ref|ZP_06619653.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292631691|gb|EFF50311.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 383

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 96/249 (38%), Gaps = 29/249 (11%)

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM---RNLKKSNSLPRAL 129
            ++S +  + + + ++   +      +    K      +    +     +K+ +S    L
Sbjct: 154 DYVSYKGNKHLQNSTIVDYVRTFSVAINAAIKDGYKIINPFKLLSSDEKVKQPDSHREYL 213

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           ++++   L+            ++              GLRIS+  +L  +NI+ +     
Sbjct: 214 SQEELQKLMITPCRRDDIGKAYL---------FACFSGLRISDIRALRWKNIIVEDGQFF 264

Query: 190 ---IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
                 K  K   +PL     + I          +  N +  +F      P NP   +  
Sbjct: 265 AMLFMQKTGKELKIPLPDKAMEII---------SIRGNDEDKVF----FLPSNP-TVEDN 310

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +++     G+    T HT RH++AT LL+ G DL ++  +LGH  ++TTQIY  V  K  
Sbjct: 311 LKKWAEAAGINKHLTFHTARHTYATLLLTLGADLYTVSKMLGHTNVATTQIYAKVVDKKK 370

Query: 307 GDWMMEIYD 315
            D +  + D
Sbjct: 371 VDAVNLVND 379


>gi|260545644|ref|ZP_05821385.1| phage integrase [Brucella abortus NCTC 8038]
 gi|260754402|ref|ZP_05866750.1| phage integrase [Brucella abortus bv. 6 str. 870]
 gi|260757621|ref|ZP_05869969.1| phage integrase [Brucella abortus bv. 4 str. 292]
 gi|260761447|ref|ZP_05873790.1| phage integrase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883427|ref|ZP_05895041.1| phage integrase [Brucella abortus bv. 9 str. C68]
 gi|260097051|gb|EEW80926.1| phage integrase [Brucella abortus NCTC 8038]
 gi|260667939|gb|EEX54879.1| phage integrase [Brucella abortus bv. 4 str. 292]
 gi|260671879|gb|EEX58700.1| phage integrase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674510|gb|EEX61331.1| phage integrase [Brucella abortus bv. 6 str. 870]
 gi|260872955|gb|EEX80024.1| phage integrase [Brucella abortus bv. 9 str. C68]
          Length = 312

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 104/276 (37%), Gaps = 31/276 (11%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97
           S++ + R FL  +    +E +            + + I   R +   + ++ R ++ +  
Sbjct: 61  SHKYNVRSFLGEI----DEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSK 116

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
            L+  K  K+    N+      K+     R L +++   L   +                
Sbjct: 117 LLR--KAHKMGDIFNLPEFIRQKERVGRIRFLEQEEEKRLFAAIKSRCEDS--------Y 166

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            +   L   G R+ EA+ LT  +I + + T  +  K ++ R VPL    RKA        
Sbjct: 167 RLSVFLVDTGCRLGEAIGLTWNDIQEQRVTFWV-TKSNRSRTVPLTRRARKA-------- 217

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLS 275
                  ++ P         LN   F++   + +  +GL        H LRH+ A+ L+ 
Sbjct: 218 SHIPRERLKGPF------SMLNQVRFRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVR 271

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            G D+R +Q  LGH  L  T  Y ++ + +    + 
Sbjct: 272 GGIDIRRVQMWLGHQTLQMTMRYAHLATHDLDSCVK 307


>gi|255025297|ref|ZP_05297283.1| integrase (phage-related protein) [Listeria monocytogenes FSL
           J2-003]
          Length = 376

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/272 (18%), Positives = 103/272 (37%), Gaps = 27/272 (9%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           I  ++ T  +  I++       + + KR +  ++SF++ +    +        +      
Sbjct: 101 INDVNRTTYQKAINEFAKTHAKETTRKRHV-YVRSFIREMVYEGVILRDPTARVIIPDDE 159

Query: 123 NSLP--RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
            +    +AL+E+Q   LV  +  H +     I      ++      G R SE + LT   
Sbjct: 160 TTYKDLKALSEEQVKKLVKELNNHFNPAHSSIS-----VILFAIASGARFSEIIGLTWDC 214

Query: 181 IMDDQSTLRIQGKGDKI--------------RIVPLLPSVRKAILEYYDL----CPFDLN 222
           I   Q T++I    D                RI+ +  +    + +           D +
Sbjct: 215 IDFVQKTIKINKTWDYKDTNTFSNTKNYSSNRIITIDDNTLSMLNKIKVYQSAEKLKDSS 274

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
            N    +F      P +     + +R+    LG+  + + H LRH+ AT LL N  +++ 
Sbjct: 275 FNKNKLVFINTNNVPPSNNAINKSLRRYCTKLGINNAISVHGLRHTHATLLLYNDCNIKY 334

Query: 283 IQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           +   LGH  + TT + Y++V  +       ++
Sbjct: 335 LSKRLGHNTIVTTLETYSHVIDEMEQKESYKV 366


>gi|256840487|ref|ZP_05545995.1| integrase [Parabacteroides sp. D13]
 gi|256737759|gb|EEU51085.1| integrase [Parabacteroides sp. D13]
          Length = 431

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 112/295 (37%), Gaps = 29/295 (9%)

Query: 27  IERG-LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIG 84
           +E+G  +K T   Y      F  FL  + ++K T    ++L+   I  F    R  + + 
Sbjct: 126 VEKGQRAKSTYNKYLAVYNHFKTFL--WEKKKRTDMAYKELTKEIIADFDKYLRVEKGLS 183

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +L      + S      +R I          +L+   +    L E++  TL + V + 
Sbjct: 184 ANTLWIYTMPLLSLTDKAWRRGIVRTDPFGEY-SLEMQETDRGYLTEEELRTLANAVFV- 241

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ-----NIMDDQSTLRIQGKGDKIRI 199
                K        +       GL   +  +LT       +   ++  +  + K      
Sbjct: 242 -----KKQTNLVRDMFLFGCFTGLSYIDIKTLTHDKIQRMDFDGEEWIITRRTKTRVSSN 296

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPL+   ++ I  Y  L   DL       +F        +  V  R+++Q+ +  G+   
Sbjct: 297 VPLMEIAKELIERYKGLAGGDL-------VFPMP-----SNSVCNRHLKQIAKACGIHKE 344

Query: 260 TTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              H  RH+FAT   L NGG + ++  ILGH  +STTQIY  V ++        I
Sbjct: 345 IGFHLSRHTFATTVYLCNGGTIEALSKILGHKHISTTQIYAEVTNRMVSSDFRAI 399


>gi|291291809|gb|ADD91771.1| integrase [Pseudomonas aeruginosa]
          Length = 132

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 1/117 (0%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 17  RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 76

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           SFAT LL +G D+R++Q +LGH  +STT IYT+V  K GG  +    D   P  +++
Sbjct: 77  SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVL-KVGGAGVRSPLDALPPLTSER 132


>gi|197259952|gb|ACH56525.1| IntI1 [Salmonella enterica subsp. enterica serovar Virchow]
          Length = 130

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 1/117 (0%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 15  RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 74

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           SFAT LL +G D+R++Q +LGH  +STT IYT+V  K GG  +    D   P  +++
Sbjct: 75  SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVL-KVGGAGVRSPLDALPPLTSER 130


>gi|154498677|ref|ZP_02037055.1| hypothetical protein BACCAP_02667 [Bacteroides capillosus ATCC
           29799]
 gi|150272416|gb|EDM99610.1| hypothetical protein BACCAP_02667 [Bacteroides capillosus ATCC
           29799]
          Length = 397

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 106/293 (36%), Gaps = 36/293 (12%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           ++    + +  ++I  +  ++ + +  +   +    +++      +K+      +     
Sbjct: 110 MSVLKSDPLGSRSIDTVKLSDAKEWAIRMSEKGYAYKTINNWKRSLKAAFYTAIEDDCIR 169

Query: 110 ESNI-LNMRNLKKSNSLPRA-LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++     M  + + ++  +  L ++Q   L    L     +  +    +  I+  L G G
Sbjct: 170 KNPFNFTMDTVLEDDTEEKVALTQEQEDRL----LAFAGSDPVYRKYCDEIIV--LLGTG 223

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAIL 211
           LR+SE   LT  ++  +   + +                    + +R +P+   V +A+ 
Sbjct: 224 LRVSELCGLTV-DLDFENRRIDVDHQLLRDSELGYYVDAPKTKNGVRQIPMSEKVDQALK 282

Query: 212 EYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS-------TT 261
                      +NI      LF    G P     ++   + L R               T
Sbjct: 283 RAVKNRGKAAPVNIGGYTNFLFLNQSGLPKTASCYESMFQGLVRKYNKHHKPDEALPNIT 342

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
            HT+RH+F T L   G + + +Q I+GH  ++ T   Y + +  +    M ++
Sbjct: 343 PHTMRHTFCTRLAQAGMNPKDLQYIMGHSNITMTLNYYAHADYASAKAAMDKL 395


>gi|240172885|ref|ZP_04751544.1| phage integrase family protein [Mycobacterium kansasii ATCC 12478]
          Length = 372

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 68/333 (20%), Positives = 115/333 (34%), Gaps = 62/333 (18%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK--IGDR 86
           RGL+  T++       +F+ F   Y      +         ++  F++  R+Q+  I   
Sbjct: 42  RGLALDTIKGRCGIVSRFVEFTNEYPWRWRPL---------DVDQFLADLRSQEKPIALS 92

Query: 87  SLKRSLSGIKSFLKY----------------------LKKRKITTESNILNMRNLKKSNS 124
           +L+   + I  F  Y                      +     T +    +    ++   
Sbjct: 93  TLRSYSNTISMFCSYVSDGRYGWVAFCEKQFGDVPSQICFEWNTPQHTTDDAVPPRR--- 149

Query: 125 LPRALNEKQALTLVDN-----VLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTP 178
             RA  + +   L D         H +   +W+ A R+S    + Y  GLR  E + L  
Sbjct: 150 --RAFTKAELQHLFDAVDDFVDEAHRTGSKRWLTALRDSTAFKIGYAYGLRRRELVMLDL 207

Query: 179 QNI--------MDDQSTLRIQG----KGDKIRIVPL-----LPSVRKAILEYYDLCPFDL 221
            +           +   L ++     KG   R   +          + +  +        
Sbjct: 208 TDFGPNPHVPTYGNYGALTVRWAKGTKGSGPRRRTVLTSPEFAWAVELLQYWCSEGRQLF 267

Query: 222 NLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
           +   + P L+   RG  L      R     R+  GLP   + H LRHSF THLL  G D 
Sbjct: 268 STADRSPALWPSERGGRLTLNALGRSFTAFRQRAGLPPELSLHALRHSFTTHLLEAGYDP 327

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             +Q  LGH   STT +YT+V S      + ++
Sbjct: 328 LFVQQQLGHSFASTTSLYTSVTSDFKQRVVQQM 360


>gi|115374695|ref|ZP_01461972.1| putative bacteriophage integrase [Stigmatella aurantiaca DW4/3-1]
 gi|310822738|ref|YP_003955096.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115368266|gb|EAU67224.1| putative bacteriophage integrase [Stigmatella aurantiaca DW4/3-1]
 gi|309395810|gb|ADO73269.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 406

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 96/243 (39%), Gaps = 33/243 (13%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  +++   LS +   L   +++++  ++  + +   K        L   +A  L+D 
Sbjct: 159 KSLSLKTINNVLSALSKLLALAEEQRVIPQAPRVRLFG-KLPKPTFDFLTFGEAERLID- 216

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-------- 192
                + E +W       +L +    GLR  E + L   ++   Q  L ++         
Sbjct: 217 -----AAEPEW-----RTLLLVALKTGLRQGELIGLQWSDLDLTQGRLNVRRTVWRGVTD 266

Query: 193 --KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
             KG + R V L  S   A+  +  L            +F    G+PL  G   + +R+ 
Sbjct: 267 LPKGGRERTVDLPASAVDALKAHRHLRGR--------FVFCQEDGQPLTAGKMAQPLRRA 318

Query: 251 RRYLGLPL---STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
               G+         H LRH++A+HL   G  L+ IQ ++GH  +  T+ Y +++     
Sbjct: 319 LHRAGISREEGRIGWHDLRHTYASHLAMRGIPLKVIQELMGHVTIEMTERYAHLSPDTRR 378

Query: 308 DWM 310
           + +
Sbjct: 379 EAV 381


>gi|148977142|ref|ZP_01813782.1| site-specific recombinase, phage integrase family protein
           [Vibrionales bacterium SWAT-3]
 gi|145963611|gb|EDK28873.1| site-specific recombinase, phage integrase family protein
           [Vibrionales bacterium SWAT-3]
          Length = 434

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 89/248 (35%), Gaps = 9/248 (3%)

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +    +  +  +      G  +  R+L  ++S  KY  K+    ++    ++  +K   L
Sbjct: 133 IDSCHVHRWFDELSQSYAG--TANRNLDVLRSIFKYAVKQGYCIDNPCDGLKQNRK-RKL 189

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
            R L+  +   L  +  L    +   ++A    +L L+   G RISE   L         
Sbjct: 190 NRFLSLDELARL--HKALTVVSQQGELEACCCQVLELVLLTGCRISEVTGLQWS--FVKG 245

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
               +       ++V +    ++ +L                 +F  +R           
Sbjct: 246 REWHLPDSKTGAKVVYVGKEAQQ-LLSDIPQQVGAHRSESHDDVFTPLRRFVSRSTKVSM 304

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             +Q+R    +      H LRH+FA++ +  G  +  +  +LGH R+S+T  Y +V+   
Sbjct: 305 VWQQVRALAHIE-DVRIHDLRHTFASYAVLEGYPIPMVSKLLGHTRISSTLRYAHVDDAQ 363

Query: 306 GGDWMMEI 313
                  I
Sbjct: 364 VSQSAEAI 371


>gi|157325443|ref|YP_001468868.1| gp28 [Listeria phage A006]
 gi|300765035|ref|ZP_07075023.1| integrase [Listeria monocytogenes FSL N1-017]
 gi|66733448|gb|AAY53262.1| gp28 [Listeria phage A006]
 gi|300514335|gb|EFK41394.1| integrase [Listeria monocytogenes FSL N1-017]
          Length = 376

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 104/272 (38%), Gaps = 27/272 (9%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           I  ++ T  +  I++       + + KR +  ++SF++ +    +        +      
Sbjct: 101 INDVNRTTYQKAINEFAKTHAKETTRKRHV-YVRSFIREMVYEGVILRDPTARVIIPDDE 159

Query: 123 NSLP--RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
            +    +AL+E+Q   LV  +  H +     I      ++      G R SE + LT   
Sbjct: 160 TTYKDLKALSEEQVKKLVKELNNHFNPIHSSIS-----VILFAIASGARFSEIIGLTWDC 214

Query: 181 IMDDQSTLRIQGKGDKI--------------RIVPLLPSVRKAILEYYDL----CPFDLN 222
           I   Q T++I    D                RI+ +  S    + +           D +
Sbjct: 215 IDFVQKTIKINKTWDYKDTNTFSNTKNYSSNRIITIDDSTLSMLNKIKVYQSAEKLKDSS 274

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
            N    +F      P +     + +R+    LG+ ++ + H LRH+ AT LL N  +++ 
Sbjct: 275 FNKNKLVFINTNNIPPSNNAINKSLRRYCTKLGINIAISVHGLRHTHATLLLYNDCNIKY 334

Query: 283 IQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           +   LGH  + TT + Y++V  +       ++
Sbjct: 335 LSKRLGHNTIVTTLETYSHVIDEMEQKESYKV 366


>gi|150017497|ref|YP_001309751.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149903962|gb|ABR34795.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 325

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 61/319 (19%), Positives = 117/319 (36%), Gaps = 44/319 (13%)

Query: 21  WLQ-NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           WL+  ++ ER  S+ T   Y     + +I         I    +  L    +  ++ + R
Sbjct: 10  WLEDYVKEER--SERTYIIYRDTMLKHVIPC-------IGNIKLSDLKVVHVEKYLRELR 60

Query: 80  T-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     +++ +   +K+ L    K ++  ++    +   KK+N     L  ++   L+
Sbjct: 61  KIKNNNGSTIQLNFRNLKTALNKAVKLQLLNDNPCRFVEMPKKNNFKGNYLTAEE-FNLI 119

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-----IQGK 193
            N L        ++ +    +L L    G R  E      +NI  D  T+      I+G+
Sbjct: 120 YNSLNAA----TYLGSSFRVLLDLAVETGCRRGEMCGTEWRNIDFDNKTITFDKALIKGE 175

Query: 194 GDKIRIVPLLPSVRKAI---------------------LEYYDLCPFDLNLNIQLPLFRG 232
                      +  +A+                     L +      +    I+  L   
Sbjct: 176 HGWKIGRLKTETSYRALPLSDDLINQLKKLRIKQLENKLTFGSEYHLNSFDGIEYDLICI 235

Query: 233 IRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
            R    + P   +  ++ L +   +  +   H LRH+ AT LL NG  +++IQ  LGH  
Sbjct: 236 QRNGKFMVPNDVRDRLKYLLKRNKIDKNIRWHDLRHTSATLLLENGVAMKTIQKRLGHAS 295

Query: 292 LSTT-QIYTNVNSKNGGDW 309
           +STT  IY++V  K   + 
Sbjct: 296 MSTTSDIYSHVTEKMDREA 314


>gi|77163593|ref|YP_342118.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
 gi|254435225|ref|ZP_05048732.1| site-specific recombinase, phage integrase family [Nitrosococcus
           oceani AFC27]
 gi|76881907|gb|ABA56588.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
 gi|207088336|gb|EDZ65608.1| site-specific recombinase, phage integrase family [Nitrosococcus
           oceani AFC27]
          Length = 251

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 91/255 (35%), Gaps = 16/255 (6%)

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKS 122
            +L+   I  +  K    +    S+ R L+ +        K      +S +  +  LK+ 
Sbjct: 7   DKLASGNITRYNQKNSGGQRSPGSVNRYLAALSHTFTIAVKEWGWLEDSPMGRISKLKEP 66

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
               R L++ +   L+      +       ++     + L    G R  E ++L  +N+ 
Sbjct: 67  RGRVRFLSDSERERLLKACRGSS-------NSFLYPAVVLALSTGARRMEIMALRWRNVD 119

Query: 183 DDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
             +  + +   K  + R +PL       +     +   D +L     LF      P  P 
Sbjct: 120 LQRGLISLHETKNGERRALPLAGHALDCVKRLSKVRQIDTDL-----LFPSN-HNPQQPL 173

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             ++      +  G+      H LRHS A++L  NG  L  I  +LGH  L   + Y + 
Sbjct: 174 DLRKPWEIALKQAGIE-DFRWHDLRHSAASYLAMNGATLAEIAEVLGHKTLQMVKRYAHF 232

Query: 302 NSKNGGDWMMEIYDQ 316
           +  +    +  +  +
Sbjct: 233 SETHTARVVASMNAK 247


>gi|206580032|ref|YP_002237617.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
 gi|206569090|gb|ACI10866.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
          Length = 315

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 67/303 (22%), Positives = 115/303 (37%), Gaps = 23/303 (7%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           +  N+   ++ E GLS  T+       R +L      ++  I        S+     F+ 
Sbjct: 25  QIANFESYMKHELGLSPSTVSGRVFVIRHYLNACNDASDTDI-------FSFEAAEHFLK 77

Query: 77  KRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
              + +    +SL+     +++F +Y  +  +  E  +  +R+      +    +  +  
Sbjct: 78  YLSSYRNYSRKSLQHVTHCLRAFFRYGARNGLCREGLVDCLRS----TRVYSLDSVPEGP 133

Query: 136 TLVDN-VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGK 193
             VD   LL  +   K  D R +AIL LL   GLR +E  +L   +   ++  L I   K
Sbjct: 134 AWVDVLRLLRDAEGDKPSDIRATAILMLLAIYGLRPAEVKALQLSDFDWERELLTIDCTK 193

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
             + RI PL   V +A+L Y          +    +F  + G           +    + 
Sbjct: 194 TRRKRIFPLSRPVGEAVLRYLKDVRP---PSPHRHVFLTLYGARPVRD-IYMLVSGRLKK 249

Query: 254 LGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           L + L       LRH+ AT L+  G  L  I   LGH     T+IY  V+ K     +  
Sbjct: 250 LNVSLPQYGPRGLRHACATRLMEAGIPLAQIGMHLGHTDADATRIYAKVDMK----ALRR 305

Query: 313 IYD 315
           + D
Sbjct: 306 VAD 308


>gi|331003766|ref|ZP_08327260.1| hypothetical protein HMPREF0491_02122 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412149|gb|EGG91544.1| hypothetical protein HMPREF0491_02122 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 396

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 109/285 (38%), Gaps = 33/285 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           +    ++ I   +I  +  ++ + +  + + +     ++      +K+      +     
Sbjct: 110 MRILEKDTIGACSIENVKMSDAKEWALRMKEKGYSFITISNHKRSLKAAFYTAIQDDCIR 169

Query: 110 ESNI-LNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
           ++    ++  + + ++ P+  L+  Q  +L+  V      +  +    +  I+  L G G
Sbjct: 170 KNPFDFHINTVIEDDTEPKIPLSPMQEESLLSFV----KSDKVYYKYYDELII--LLGTG 223

Query: 168 LRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAIL 211
           LRISE   LT  +I  +  T+ +                    + IR +P+   V +A+ 
Sbjct: 224 LRISEFCGLTDSDIDFENRTINVDHQLQYSGKKSYRIETPKTENGIRKIPMSDRVLEALQ 283

Query: 212 EYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTAH 263
                              LF    G P N   +    R+L           LP+ TT H
Sbjct: 284 RVMQNRRKSDFTVDGYTGFLFLTRNGTPQNYINYDIMFRKLVEKYNKKHEEVLPVVTTPH 343

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGG 307
           TLRH+F T++ + G + +++Q ++GH  ++ T   Y +    +  
Sbjct: 344 TLRHTFCTNMANAGMNPKALQYLIGHANITMTLNYYAHATFDSAQ 388


>gi|307271277|ref|ZP_07552556.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0855]
 gi|306512026|gb|EFM81017.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0855]
          Length = 376

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/302 (17%), Positives = 111/302 (36%), Gaps = 40/302 (13%)

Query: 42  DTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY 101
           D R+ + F   Y  +      +++L+  E +  ++    +     S+K+  + +++ LK 
Sbjct: 85  DIRRAVDFSEKYFPD----TKLKELTRQEYQKALND-YGETHATASVKKHHTYMRAALKD 139

Query: 102 LKKRKITTESNILNMRNLKKSNSLP---RALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
             +  I        ++ + K N      + LN ++++ LV  +L     E       +  
Sbjct: 140 ALEEGIIHRDPTYRVQAIGKKNPKHEELKYLNYQESIHLVHEIL-----EGIKPTYTSRF 194

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-------------- 204
           I+      G R SE + +T   I     T+++    D                       
Sbjct: 195 IILFGIATGCRFSEIIGMTWDCIDFKNKTVKVNKTWDYKYTNTFSNTKNYQSKRIITIDD 254

Query: 205 ---SVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
               + K +  +         L  +  L F     + ++     + +R+  R +G     
Sbjct: 255 DTLDLLKKLQLHQKEYYLKSGLRNENNLVFLNDNMELVSNTAVNKVLRKFCRKIG-TKEL 313

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGG-------DWMME 312
           T H LRH+ A+ +L  G +++ +   LGH  + TT Q Y ++  +          + M +
Sbjct: 314 TCHGLRHTHASIMLYKGINIKYVSRRLGHKDIVTTLQTYQHILDEMEQKESNAVNEVMKQ 373

Query: 313 IY 314
           +Y
Sbjct: 374 MY 375


>gi|330890059|gb|EGH22720.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 321

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 61/305 (20%), Positives = 121/305 (39%), Gaps = 18/305 (5%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            ++ K  + +L  L      S+LT+     D    L          I       L    +
Sbjct: 20  PDVNKPLRLYLDRLAPS---SRLTMTYVLQDAADRLGMADV----DIHDIPWHTLQPGHV 72

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRAL 129
            A ++  R       +    ++ I+  +    +  + +   +L +R++K      L +  
Sbjct: 73  TALVATLREDDYAPNTTSLYVNAIRGVMNEAWRHDLISHEQLLKIRSIKPVSGTRLAKGR 132

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           N +   TL+  ++   + + +    R++AI+ +LYG G+R SE+++L    I   + +LR
Sbjct: 133 NIR--RTLIRELMQACAADPRPQGRRDAAIIAILYGSGMRKSESVNLDLSQIDFAERSLR 190

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNP-GVFQR 245
           + GKG+K  I        KA+ ++ +L    L        F   R  RG  +    + + 
Sbjct: 191 VLGKGNKQLIKYAPEWAFKALNDWLELRRSCLQPGQGDDPFLFNRIRRGSHITRDRITKH 250

Query: 246 YIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            I  + +  G  + ++   H  R SF T ++    DL   Q +  H  +ST   Y  ++ 
Sbjct: 251 AIYFIAKQRGRQVGVNIMPHDFRRSFITRVIEE-FDLSIAQKLAHHTHISTPASYDMLSE 309

Query: 304 KNGGD 308
               +
Sbjct: 310 NERRN 314


>gi|300724633|ref|YP_003713958.1| tyrosine recombinase, regulator of fimA [Xenorhabdus nematophila
           ATCC 19061]
 gi|297631175|emb|CBJ91868.1| tyrosine recombinase, regulator of fimA [Xenorhabdus nematophila
           ATCC 19061]
          Length = 187

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 75/180 (41%), Gaps = 8/180 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L   +   ++         +      R+  +L + +  G R+SE  +L+  ++  + +
Sbjct: 5   KFLTRYEIDAIL------AETKQGRHAERDYCMLLMCFLHGFRVSELCNLSLSDLDLNSA 58

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            + I+  KG      PL+P   +A+ ++ D+   +        +F   +   ++      
Sbjct: 59  IIHIRRLKGGLSTTHPLIPEEIEALKKWLDVRQ-EWREADSPWVFLSQKSGAVSRQQVYG 117

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +++  +   + +S   H LRH+    L   G D R IQ  LGH  +S T IYT  N K 
Sbjct: 118 LLKRYGKKASVSVSPHPHMLRHACGYALADLGRDTRLIQDYLGHRNISHTVIYTASNVKR 177


>gi|315607167|ref|ZP_07882171.1| integrase [Prevotella buccae ATCC 33574]
 gi|315251221|gb|EFU31206.1| integrase [Prevotella buccae ATCC 33574]
          Length = 409

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/286 (18%), Positives = 104/286 (36%), Gaps = 23/286 (8%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSLKRSLS 93
           ++ +Y         F+      K++   + QL+   I  F           + S     +
Sbjct: 133 SMANYHSTRIHLQEFIQKKY--KVSDLALSQLTENFIHEFQQYFLGECGFQESSFYNVAT 190

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            +K+  +   +  +        ++  K +  LP+AL+      L    L     E +   
Sbjct: 191 HLKTVCRLAYREGLADILLFDKVKISKGNKKLPKALDRGAFEKLKTLHLEDLEEEMETA- 249

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
                I       G    + + L   +++ DD+ +L ++    K  +   +  + +AI  
Sbjct: 250 ---RDIFLFACYTGAAYCDLMELDKSHLVRDDEGSLWLKFNRQKTGVPCRVKLLPEAI-- 304

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +             LP         +    +Q Y++ LR   G+    T HT RH+FAT 
Sbjct: 305 WLMEKLHSDERETLLPF--------MGYATYQSYLKALRLRAGISFPFTTHTARHTFATL 356

Query: 273 L-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           + L  G  + ++  +LGH  +S T+ Y  V  +     + E +D+ 
Sbjct: 357 ITLEQGVPIETVSKMLGHSNVSMTERYAKVTPR----KLFEEFDRF 398


>gi|229181765|ref|ZP_04309077.1| Integrase [Bacillus cereus 172560W]
 gi|228601703|gb|EEK59212.1| Integrase [Bacillus cereus 172560W]
          Length = 267

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 98/261 (37%), Gaps = 31/261 (11%)

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           I+++ ++ + + + + ++      ++   K+  + +I  E+ +  ++  ++     +  +
Sbjct: 2   IQSYYAELKEKGLSNGTISNIHRCLRCIFKHAVEWEIIHENIMNKVKKPREEQGEMKTWS 61

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            ++    +  +        K  + +      L    G+R  E L+LT ++I  D   + +
Sbjct: 62  SEECNRFLQYL--------KEKNIKYHIFFLLAIYTGMRRGELLALTWKDIDFDNKRILV 113

Query: 191 QG---------------KGDKIRIVPLLPSVRKAILEYYDLC-----PFDLNLNIQLPLF 230
                                 R + +   V + +  YY         + ++L+ +  +F
Sbjct: 114 NKSLVKTEKGLFKAATKTKSSNRSISISSFVIRKLQSYYSYKKKEFFRWGIHLDEEAYIF 173

Query: 231 RGIRGK-PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
            G     PL+     R++       G+P     H LRH+ AT +L  G   + +Q  LGH
Sbjct: 174 TGNTIHSPLHIDAPHRFLNDHYTKAGVPR-IRIHDLRHTHATLMLQAGEHPKIVQDRLGH 232

Query: 290 FRLSTT-QIYTNVNSKNGGDW 309
             +  T   Y+++        
Sbjct: 233 SSIQMTLDKYSHITQNMQQQA 253


>gi|291516767|emb|CBK70383.1| Site-specific recombinase XerD [Bifidobacterium longum subsp.
           longum F8]
          Length = 424

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 122/298 (40%), Gaps = 19/298 (6%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           L E V   L    + W   L    GL+  T+  Y      FL +L  +      + ++  
Sbjct: 126 LAEPVVPGLAVVMERWEAYLAGS-GLASATVGHYRRMAGLFLTWLESH-----GVVSLDG 179

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
              + +  F++  R++   + S++ + S ++   ++L +  +      + +  +++++++
Sbjct: 180 SDGSHVLGFLAGLRSR-WSESSMRHAASDLRPLFRWLGRDDLAD---AIGLAGIRRTHAI 235

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
              L + +   L++         ++ + +R++AI  L   CGLR  + + L   ++  D 
Sbjct: 236 AGTLPDDEHRRLLEACA------SRSVPSRDAAITLLSLTCGLRACDVIGLRIADVDWDS 289

Query: 186 STL-RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
            ++  +Q K      VP+   +   +  +        + +     ++             
Sbjct: 290 MSIGLVQRKTGNPLTVPMTGPLAARLASWLLDERPATDDDRVFVRYKAPHVALRGHSSVY 349

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY--TN 300
             I ++ R+ GL     +  LR + AT +L     L +I ++LGH    +T++Y  T+
Sbjct: 350 EAISRVMRHAGLGRRGGSRLLRRNAATRMLEAATPLPTISAVLGHADPDSTRVYMATH 407


>gi|229547242|ref|ZP_04435967.1| bacteriophage integrase [Enterococcus faecalis TX1322]
 gi|256854683|ref|ZP_05560047.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|229307639|gb|EEN73626.1| bacteriophage integrase [Enterococcus faecalis TX1322]
 gi|256710243|gb|EEU25287.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|315030632|gb|EFT42564.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4000]
          Length = 309

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 85/213 (39%), Gaps = 21/213 (9%)

Query: 103 KKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
               + +++    +    +  +   S  + LN+ +   L+  + L       W       
Sbjct: 90  VDEGLISKNPTRKIVIKGKAPRPKKS--KFLNQFEVQALLKELELGEQLNWDW------- 140

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212
            + L+   GLR SEAL+LTP++    +  + I+   +         S       RK  ++
Sbjct: 141 FILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGFFQSTKNESSKRKVQID 200

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +     F   +    P+        +        ++ L +   +P+  T H+LRH+ A+ 
Sbjct: 201 WQTAMQFSQLIRNMPPMEPIFVKGRVFNSTINNRLKVLCKRAQIPV-ITVHSLRHTHASL 259

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           LL  G  + S+ + LGH  ++TTQ  Y ++  +
Sbjct: 260 LLFAGVSIASVATRLGHSSMTTTQETYLHIIQE 292


>gi|306842096|ref|ZP_07474767.1| Phage integrase [Brucella sp. BO2]
 gi|306287792|gb|EFM59218.1| Phage integrase [Brucella sp. BO2]
          Length = 308

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 105/276 (38%), Gaps = 31/276 (11%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97
           S++ + R FL  +    +E +            + + I   R +   + ++ R ++ +  
Sbjct: 57  SHKYNVRSFLGEI----DEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSK 112

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
            L+  K  K+    N+      K+     R L +++   L   +                
Sbjct: 113 LLR--KAHKMGDIFNLPEFIRQKERVGRIRFLEQEEEKRLFAAIKSRCEDS--------Y 162

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            +   L   G R+ EA+ LT  +I + + T  +  K ++ R VPL    RKA        
Sbjct: 163 RLSVFLVDTGCRLGEAIGLTWNDIQEQRVTFWV-TKSNRSRTVPLTRRARKA-------- 213

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLS 275
               +  ++ P         LN   F++   + +  +GL        H LRH+ A+ L+ 
Sbjct: 214 SHIPHERLKGPF------SMLNQVRFRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVR 267

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            G D+R +Q  LGH  L  T  Y ++ + +    + 
Sbjct: 268 GGIDIRRVQMWLGHQTLQMTMRYAHLATHDLDSCVK 303


>gi|294491667|gb|ADE90423.1| integrase/recombinase, phage integrase family [Escherichia coli
           IHE3034]
 gi|323161587|gb|EFZ47473.1| integrase [Escherichia coli E128010]
          Length = 334

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 98/250 (39%), Gaps = 36/250 (14%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSN 123
            L   +I A+ S++  + +   S  R ++ +      LKK  +   E  +  +  L  S 
Sbjct: 101 DLDKLKIIAWRSQKIAEGLKPSSANRYMNRLSGMFTVLKKIGLWDAEHPVRGISILYVSP 160

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
                L++K+   L+D            ++     +  L    G R SEA  L  + I+ 
Sbjct: 161 REMAFLSQKEVALLLDT-----------LEGDYWRVALLCLSTGARWSEACKLRGEQIVH 209

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           ++ T  ++ K  + R VP+  +V +AI        F++                      
Sbjct: 210 NRVTF-LETKNGRKRTVPISQAVCEAIKTRETGSLFEVK--------------------- 247

Query: 244 QRYIRQLRRYL--GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            R      + +   LP    AH LRH+FA+H + NGG++ ++Q ILGH  +  T  Y + 
Sbjct: 248 YREFCLALKRVKPDLPKGQAAHVLRHTFASHFVMNGGNIIALQKILGHATIQQTMAYAHF 307

Query: 302 NSKNGGDWMM 311
                 D + 
Sbjct: 308 APDYLQDAVA 317


>gi|291515802|emb|CBK65012.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 420

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/292 (15%), Positives = 110/292 (37%), Gaps = 25/292 (8%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
            I R  ++ T   Y+    +    + +   +K+   T+++L  T I  + +   +     
Sbjct: 124 RIGRDRAQRT---YDRLMEERRCLMRYLVLKKLEDVTLKELDVTFIERYYAWMLSDGHCG 180

Query: 86  RSLK-RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVDNVLL 143
           ++   +    +K  L    ++        L  +     +  PR  L++++   L++  L 
Sbjct: 181 KTTAFKRTQTLKCVLYVAVEQGWIDRHPFLAFKC--APDYKPRMFLSDEEIQRLMNIELR 238

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD---DQSTLRIQGKGDKIRIV 200
           +              +       GL   +  +LT  +I+     +  +  + +       
Sbjct: 239 YHRQRAV------RDMFIFCCFTGLAYIDLKNLTYDHIVTTPTGEQYIYNRRQKTGTPYH 292

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
            +L  + +  +E Y   P  ++     P+         +       I+++ +  G+  + 
Sbjct: 293 IMLLPIAQEFIERYRGYPGKIDETRVFPVK--------SRKSMCTTIKRIAQKCGITKNL 344

Query: 261 TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           + H  RH+F T + L  G  + ++  +LGH +++TTQIY  + +    + + 
Sbjct: 345 STHIGRHTFGTTVTLEKGVPIETVSEMLGHKQITTTQIYAKLTANKMKEDVR 396


>gi|295134062|ref|YP_003584738.1| transposase [Zunongwangia profunda SM-A87]
 gi|294982077|gb|ADF52542.1| putative transposase [Zunongwangia profunda SM-A87]
          Length = 410

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 57/295 (19%), Positives = 108/295 (36%), Gaps = 26/295 (8%)

Query: 32  SKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKR----RTQKIGDR 86
           S  TL+ Y+        FL A +  E   +  +      +   FI         +K+G  
Sbjct: 126 SAHTLRHYKVTQGYLQKFLRAKFNLEDFRLIYLNFSFIKDFEFFIKSYQPTDHQRKMGHN 185

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           +  + L  ++  +      +   +   +  ++          L  ++  ++ D      S
Sbjct: 186 TAMKHLQRLRKMVTMAYHHEWIPKDPFVRFKSSYVKKRR-EFLTREELQSIEDFQ----S 240

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQ----NIMDDQSTLRIQGKGDKIRIVPL 202
              +    ++  I       GL   +   LT      +   +Q     + K      +PL
Sbjct: 241 SINRLNIVKD--IFLFSCYTGLSYIDITKLTMDNIGMDFDGNQWIETERQKTKTALKIPL 298

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           L   R  +  Y D  P  ++    LP          +      Y++++  + G+    T 
Sbjct: 299 LNQARDILKRYQDH-PKTVHSKTLLP--------RYSNQKLNSYLKEIADFCGIKKHLTF 349

Query: 263 HTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           H  RH+FAT + L+NG  + ++  +LGH +L+TTQIY  V  K   D M  +  +
Sbjct: 350 HIARHTFATTITLTNGVPIETVSKLLGHTKLATTQIYARVVDKKVKDDMAMLNAK 404


>gi|261881024|ref|ZP_06007451.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270332233|gb|EFA43019.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 407

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 58/314 (18%), Positives = 127/314 (40%), Gaps = 30/314 (9%)

Query: 9   IVSFELLKERQ-NWLQNLE-IERGLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQ 65
           ++ + L K+R  N+L   +      +K  L+  +    +F  FL   Y   + +I+    
Sbjct: 110 MLGYRLKKDRNVNFLDYYQAYIDCYTKKDLRMIKIALNRFKDFLKEQYPVYEFSIKP-EL 168

Query: 66  LSYTEIRAFISKRRTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           ++   +  F+   +++ +G   +S+ +     K  ++Y    ++  +     +       
Sbjct: 169 ITKDMMEHFVEYLQSRSVGEGAKSIYQRF---KKVVRYAIDHEVMLKDPCKGVVCKVDEQ 225

Query: 124 SLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            L +  L+  +  +L+     + +   +       A +  LY CGLR  +   LT +NI 
Sbjct: 226 ILRKDVLSMDEIQSLIQCHYDNENPNVR------RAFILCLY-CGLRFCDVKDLTYKNID 278

Query: 183 DDQSTLRI--QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLN 239
                L+              ++  +   +L      P DL+ +I  LP +         
Sbjct: 279 YTNRLLKFEQNKTKGHSANSGVVIPLNDGLLSLIGEAPDDLDSSIFNLPSYESCC----- 333

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                + +++  +  G+    + H  RHSFA ++L+NG +++++ S+LGH  L  T+ YT
Sbjct: 334 -----KSVKRWVKRAGINKHISWHCARHSFAVNILNNGANIKTVSSLLGHSGLKHTEKYT 388

Query: 300 NVNSKNGGDWMMEI 313
               K   + +  +
Sbjct: 389 RAVDKLKSEAINSL 402


>gi|332826665|gb|EGJ99491.1| hypothetical protein HMPREF9455_04143 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 406

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/282 (14%), Positives = 101/282 (35%), Gaps = 19/282 (6%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSLKRSLSGI 95
           + Y         FL      K++      L  + I  F    +  +++   ++    + +
Sbjct: 133 KGYWLALNHLTKFLKEKY--KLSDIPFSALDRSFIDKFDLYLKIDRRLAPGTIVLYTTRL 190

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
            + +       I T++  +     ++     + L  K+   L+   L             
Sbjct: 191 GTIIGDAITEGIITKNPFVGYE-PERPERYQKYLTRKELNKLMTTPL------NTSKQYL 243

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
              +       G+   +   LT +++   +  +       +   +     + +  L+  +
Sbjct: 244 IRDLFLFSCYTGIPYCDMCKLTNEDVSVAEDDVVWIKTFREKTGIDYEIPMLELPLQILE 303

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
                ++    LP++          G   R ++++ R  G+    T H  RH++AT + L
Sbjct: 304 RYRGTVSDERLLPMYPN--------GELNRELKKIARICGITRRLTWHCGRHTYATEITL 355

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           S G  + ++  +LGH +++TTQIY  + +    + M  +  +
Sbjct: 356 SQGVPIETVSRMLGHSQIATTQIYAKITNDKIDEDMKALEKR 397


>gi|329954304|ref|ZP_08295398.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
 gi|328528010|gb|EGF54996.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
          Length = 408

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/317 (17%), Positives = 123/317 (38%), Gaps = 32/317 (10%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + +LQ +++    +  T   YE   ++ + F+ F     ++   I+ ++   I  F+
Sbjct: 115 QHNEQYLQKVKM--NTTDKTYSRYELTKKRLIEFMKFKY--SVSDMLIKDINVVFIEDFL 170

Query: 76  SKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
              +        +  + +   ++ + + K   + T     + R +K   +    L  ++ 
Sbjct: 171 LYIKNNYGCSHNTAMKFVQRFRTVVNFAKNTGLVTADPFGSYR-VKFERTDRDYLTMEEI 229

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRI 190
             + ++        TK ++      ++  Y   L   +   L  ++       +   +R 
Sbjct: 230 TAIYNHKFC-----TKRLEQVRDLFIFSCY-TALSYIDVCELRQEDIRTGFDGNLWIIRK 283

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           + K +    V LL   +  + +Y            +  L  G     ++      Y++++
Sbjct: 284 RHKTNVTSTVRLLDIPKAILEKY------------KDKLPNGKILPVISNQKMNDYLKEI 331

Query: 251 RRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNS---KNG 306
               G+  + T H  RHS AT  LLSNG  + ++  ILGH  + TTQIY  +      N 
Sbjct: 332 AAICGIEKNLTYHVARHSCATSVLLSNGVPIETVSKILGHTNIRTTQIYARITDLKVSND 391

Query: 307 GDWMMEIYDQTHPSITQ 323
            + + +  D TH + ++
Sbjct: 392 MEMLAQKLDATHRTASR 408


>gi|310830692|ref|YP_003965793.1| Integrase [Paenibacillus polymyxa SC2]
 gi|309250159|gb|ADO59725.1| Integrase [Paenibacillus polymyxa SC2]
          Length = 317

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/293 (18%), Positives = 118/293 (40%), Gaps = 22/293 (7%)

Query: 20  NWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFY----TEEKITIQTIRQLSYTEIR 72
            W++   +E      S  T+++Y  D +QF++++         +    +   Q     ++
Sbjct: 5   KWIRYYSLELKALNRSSHTVRTYGYDLQQFVLYIRDQRLPSQMDTFQFKQACQSYLLSLQ 64

Query: 73  AFISKRRTQKI--GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN----LKKSNSLP 126
            +  + R +++   D ++ R  S ++SF+++L +    TE     +       +    L 
Sbjct: 65  TYHDEDRGEELPYDDATINRKRSSLRSFIRFLSRLNYITEDFSSEIELSNSLAQPPQVLL 124

Query: 127 RALNEKQALTLVDNVLLH-TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
                 +   ++D  + +  + E + +  RN      L   G+++ E L L   NI+ DQ
Sbjct: 125 TYEEINEMTKILDQRIFYGKTEELRLMHRRNKVAFLTLLETGIKVWELLILKWGNILLDQ 184

Query: 186 STLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPL--- 238
           +T+ I + K  + R VP   S+ +    Y +      N +       LF G    P+   
Sbjct: 185 NTIVIPKRKSIETRDVPCSNSLAQEFRLYLEHMRKLKNFDPSFLDGFLFFGAGKSPMIAI 244

Query: 239 NPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
            P   +R    L +  G+   + T  +LRH+   + +     +  +  +LG+ 
Sbjct: 245 TPKTIERMFDSLAKEAGIENKNVTPQSLRHTMVHYQIGQQKSIEELTHLLGYS 297


>gi|322410893|gb|EFY01801.1| Integrase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC
           27957]
          Length = 381

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 102/271 (37%), Gaps = 32/271 (11%)

Query: 63  IRQLSYTEIRAFISKRRTQKIG---DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           + +++ + ++ F +K     +      S+ R +      L+Y    ++   +    +   
Sbjct: 110 LEKITPSFVQQFANKLAHTLVNFKVACSINRRI------LQYAVLLQLIPYNPAREIIIP 163

Query: 120 KKSNS---LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           KK        + +N +    L+D +       TK+    ++ +   L   G R  EA++L
Sbjct: 164 KKQKKSADRVKFINPQNLKALLDYMETLAP--TKYQYYYDNVLYRFLLATGCRFGEAVAL 221

Query: 177 TPQNIMDDQSTLRIQGKGDKI-------------RIVPLLPSVRKAILEYYD---LCPFD 220
              +I  +  T+ I    ++              RI+ +   +   + +Y +   L   +
Sbjct: 222 EWSDIDLEAGTVSISKTYNRQINQISTPKTKSGKRIISIDNKLVLLLKQYRNRQRLIFLE 281

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
           +       +F        +  V  + +    + + +P   T H  RH+ A+ LL+ G   
Sbjct: 282 IGARAPKVIFASPTLTYASSDVRSKALAHRCKEVDIPR-FTFHAFRHTHASLLLNAGISY 340

Query: 281 RSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           + +Q  LGH  +  T   Y +++ +   + +
Sbjct: 341 KELQHRLGHSNIKMTLDTYGHISKEKEKEAV 371


>gi|300924591|ref|ZP_07140553.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|300419222|gb|EFK02533.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
          Length = 334

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 57/275 (20%), Positives = 104/275 (37%), Gaps = 40/275 (14%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
           E D +Q    +     +   +     L   +I A+ S++    +   S  R ++ +    
Sbjct: 80  EEDRKQLCNIINELGADMQAV----DLDKLKIIAWRSQKIAAGLKPSSANRYMNRLSGMF 135

Query: 100 KYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
             LK+  +   E  +  +  L  S      L++K+   L+D            ++     
Sbjct: 136 TVLKRIGLWDAEHPVRGISILYVSPREMAFLSQKEVALLLDT-----------LEGDYWR 184

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +  L    G R SEA  L  + I+ ++ T  ++ K  + R VP+  +V +AI        
Sbjct: 185 VALLCLSTGARWSEACKLRGEQIVHNRVTF-LETKNGRKRTVPISQAVCEAIKTRETGGL 243

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL--GLPLSTTAHTLRHSFATHLLSN 276
           F++                       R      + +   LP    AH LRH+FA+H + N
Sbjct: 244 FEVK---------------------YREFCLALKRVKPDLPKGQAAHVLRHTFASHFVMN 282

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           GG++ ++Q ILGH  +  T  Y +       D + 
Sbjct: 283 GGNIIALQKILGHATIQQTMAYAHFAPDYLQDAVA 317


>gi|251764782|sp|Q38067|INTG_BPPF1 RecName: Full=Putative integrase
 gi|187940170|gb|ACD39300.1| phage integrase family protein [Pseudomonas aeruginosa]
          Length = 333

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 93/238 (39%), Gaps = 32/238 (13%)

Query: 77  KRRTQKIGDRSLK---RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +RR  ++   ++    R LS +  F + ++      E+ +  +R +K        L+  Q
Sbjct: 107 QRRLTEVKPETVNHEQRYLSAV--FSELIRLGSWHKENPLGKVRQIKTDQVELTFLSLDQ 164

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L++     T++ T  +         L    G R  EA SLT   +   +     + K
Sbjct: 165 VARLLEECKASTNNHTYPVA-------LLCLATGARWEEAESLTRGAVHGGKVHYH-RIK 216

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
             + R VP+   + + I        F + +     LF   R             R   + 
Sbjct: 217 NRQSRSVPIPDELERLI--------FKVGMPGSGRLFMSCR----------AAFRCAYQR 258

Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            G        H LRH+FA+H +  GGD+ ++Q ILGH  ++ T  Y +++ ++    M
Sbjct: 259 CGFQTPGQMTHILRHTFASHYMMGGGDILTLQRILGHSSITMTMRYAHLSPEHLASAM 316


>gi|206975052|ref|ZP_03235966.1| prophage lambdaba02, site-specific recombinase, phage integrase
           family [Bacillus cereus H3081.97]
 gi|206746473|gb|EDZ57866.1| prophage lambdaba02, site-specific recombinase, phage integrase
           family [Bacillus cereus H3081.97]
          Length = 319

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 58/304 (19%), Positives = 112/304 (36%), Gaps = 22/304 (7%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L   + + G +  TL+ Y  D R  L  +  + E K     +  L+  +IR     
Sbjct: 22  VKDFLIEKKAQ-GKAASTLKQYGWDLRIILFLIHEHFENK----NLIDLTRKDIRNLSIV 76

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT--TESNILNMRN-LKKSNSLPRALNEKQA 134
            +   + +  +   +S ++S L++           +    +R   K        + E Q 
Sbjct: 77  FQEMGMSNARVNGLMSALRSALEFCADDDDYNYEFNVGSRVRGLPKNPIREITFITEDQI 136

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D +L              +  L L Y    R +E   +  + + +   T  ++GK 
Sbjct: 137 NWLIDELLEQEK-------YMLATYLALSYYSAARKNEVYQVQKEGLTEQYYTNVVRGKR 189

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI----RQL 250
            K   +     V+K I  Y      D   ++ + +++    + LN  VF  +     + L
Sbjct: 190 GKKFRLYYNHRVQKCIRLYIKQRGKDTIPDLFVRVYKNGERRRLNKSVFNYWCGIFAKML 249

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G       H  RHS   +L   G  L  ++S+  H  +STT+ Y         + +
Sbjct: 250 NEKEGKDFKMNPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTESYLK---DRSEEDI 306

Query: 311 MEIY 314
            EI+
Sbjct: 307 AEIF 310


>gi|15042706|gb|AAK82422.1|AF396083_1 MrfI [Photorhabdus luminescens]
          Length = 190

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 73/180 (40%), Gaps = 8/180 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L   +   +++               R+  ++ + +  G R+SE  +L   ++  +  
Sbjct: 5   KFLTRHEINAILE------KARQGRHAERDYCMILMCFIHGFRVSELCNLMLSDLDLNSG 58

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            + ++  KG      PL+P    A+ +++++       +    +F   +   ++      
Sbjct: 59  IIHVRRLKGGLSTTHPLVPEEIDALNQWFNIR-RQWRESDTSWVFLSQKSGAISRQQVYG 117

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +++  R   + +S   H LRH+    L   G D R IQ  LGH  +S T IYT  N K 
Sbjct: 118 LLKRYGRQALVNISPHPHMLRHACGYALADLGRDTRLIQDYLGHRNISHTVIYTASNVKR 177


>gi|313638213|gb|EFS03461.1| gp28 [Listeria seeligeri FSL S4-171]
          Length = 376

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 27/278 (9%)

Query: 53  YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
           + E+      I  ++ T  +  I++       + + KR +  ++SF++ +    +     
Sbjct: 91  FCEKYFAGLKINDVNRTTYQKAINEFAKTHAKETTRKRHV-YVRSFIREMVYEGVILRDP 149

Query: 113 ILNMRNLKKSNSLP--RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
              +       +    ++L+E Q   LV  +  H +     I      ++      G R 
Sbjct: 150 TARVIIPDDETTYKDLKSLSEVQVKKLVKELNNHFNPIHSSIS-----VILFAIASGARF 204

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKI--------------RIVPLLPSVRKAILEYYDL 216
           SE + LT   I   Q T++I    D                RI+ +  +    + +    
Sbjct: 205 SEIIGLTWDCIDFVQKTIKINKTWDYKNTNAFSNTKNYSSNRIITIDDNTLSMLNKIKVY 264

Query: 217 ----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                  D   N    +F      P +     + +++  + LG     + H LRH+ AT 
Sbjct: 265 QSAEKLKDSTFNKNKLIFINGNCFPPSNNAINKSLKRYCKKLGFNKDISVHGLRHTHATL 324

Query: 273 LLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDW 309
           LL N  +++ +   LGH  + TT + Y++V  +     
Sbjct: 325 LLYNDCNIKYLSKRLGHNTIVTTLETYSHVIDEMEQKE 362


>gi|227551861|ref|ZP_03981910.1| phage integrase family site specific recombinase [Enterococcus
           faecium TX1330]
 gi|227179033|gb|EEI60005.1| phage integrase family site specific recombinase [Enterococcus
           faecium TX1330]
          Length = 409

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/296 (17%), Positives = 103/296 (34%), Gaps = 48/296 (16%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRT--------QKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           I    + + +  + + FI++  T        + +   + K   + + +  K   + +   
Sbjct: 109 IGKYKLDKYTRADHQRFINQLLTKKGLGRTKEGLSVTTAKSINATLSNAFKKAIQLRYIK 168

Query: 110 ESNILNMRNLKKS--NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
            +    +   +        +     Q+   ++        E  +I         +++  G
Sbjct: 169 NNPTSFVEFPRNPSDKKKVKYYTFDQSELFLEF----AKKEKSFIWYP---FFLIIFDQG 221

Query: 168 LRISEALSLTPQNIMDDQSTLRIQ---------------------GKGDKIRIVPLLPSV 206
           LR SEAL L   +I   Q+TL I                            R +P+   V
Sbjct: 222 LRKSEALGLQWADIDFSQNTLNINRERLGAAEKGPNKGLIITDDTKTPSGTRSLPMTKRV 281

Query: 207 RKAILEYYDLCPFDLNL-----NIQLPLFRG----IRGKPLNPGVFQRYIRQLRRYLGLP 257
           +KA+L   +    +        + +  LF       +G P+          ++ +   LP
Sbjct: 282 KKALLTLRNQVIKEFGFLPETDDHEAFLFINTYRKNKGIPIRDRTVNGASHRIEKRANLP 341

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              T H  RH+FA      G  L  I+  LGH  +STTQ+Y +++ +     M ++
Sbjct: 342 -HITVHDGRHTFAARTRQAGIPLEDIKDFLGHKDVSTTQVYAHISPEVKKRSMNQL 396


>gi|331674447|ref|ZP_08375207.1| putative phage integrase [Escherichia coli TA280]
 gi|331068541|gb|EGI39936.1| putative phage integrase [Escherichia coli TA280]
          Length = 367

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 62/341 (18%), Positives = 127/341 (37%), Gaps = 47/341 (13%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M      ++   ELL E   +       R L   T  SY    R F+ F+          
Sbjct: 16  MGSKKAGKLTWDELLDEY--FFS-----RNLRPDTEWSYRKVVRGFVDFMGEGV------ 62

Query: 61  QTIRQLSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT--TESNILNMR 117
                ++  +I+ +  +  +TQ +   +    ++ +++   +  K+ +   TE+ +    
Sbjct: 63  -FPADVTLLDIQRWRRQVLKTQSLSTYTWNNKVAHLRAIFGFGIKKGLLPHTENPLCEAS 121

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS------------AILYLLYG 165
             K++    + LN+ Q + +   V     +ET+     +              +L +L  
Sbjct: 122 VAKEAKK-KKTLNKDQMIQIYLVVQKFAEYETQQRVPCDRRRNALYPARYWLTVLDVLRY 180

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV--RKAILEYYDLCPFDLNL 223
            G+R ++   +  +++   +  + +Q +G K      +P V   KA LE        L  
Sbjct: 181 TGMRFNQLQHIRLKDVRPGEGVIELQLEGSKTHREWGVPIVTPLKAPLELLLSRARCLGA 240

Query: 224 NIQLPLFRGIR------------GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
                LF   R                     + + R+L R  G     +AH  RH+ AT
Sbjct: 241 GPDDFLFDVCRFTDCIEPDKYEYCPARAHQAVKGFFRRLSRECG--FLVSAHRFRHTLAT 298

Query: 272 HLLSN-GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            L+ +   ++  ++S+LGH  + TT  Y +V+  +  + + 
Sbjct: 299 VLMESPERNMHLVKSLLGHQSIVTTMEYVDVSVVSTAEILE 339


>gi|298674561|ref|YP_003726311.1| integrase family protein [Methanohalobium evestigatum Z-7303]
 gi|298287549|gb|ADI73515.1| integrase family protein [Methanohalobium evestigatum Z-7303]
          Length = 390

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 60/309 (19%), Positives = 117/309 (37%), Gaps = 41/309 (13%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GL K T+++              +    I  +   Q+   +I ++I         + S  
Sbjct: 41  GLKKSTIRN---------HLYGMHYISGIINKPFPQVQKRDIESYIGYLERNIDSESSKS 91

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL-NEKQALTLVDNVLLHTSHE 148
              + +K F K+    +    S I    N K +  LP  L   ++   +++         
Sbjct: 92  TKKTQLKKFFKWYHGSETELTSWIKT--NKKSNRKLPDQLITTEEVKQMIEAAD------ 143

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ--STLRIQGKGDKIRIVPLLPSV 206
                 R+ A++ +LY  G R+SE  +L  +++  DQ    +++ GK    RI  +    
Sbjct: 144 ----YVRDKALIAVLYDTGARVSEIGNLKIKDLNFDQYGGVIKVDGKTGMRRIRIIFS-- 197

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
              I  + +  P   N +  L +    R     L        ++ + +  G+      H 
Sbjct: 198 VPYINMWLNTHPLRDNQDSYLWVTLSRRAKCSQLRYHSINDNLKIIAKRAGINKKIYNHL 257

Query: 265 LRHSFATHLLSNGGDLRSIQ--SILG--HFRLSTTQIYTNVNSKNGGDWMMEIY-----D 315
            RHS AT L ++   L   Q    LG  H   +  Q Y +++ K   D +++++     +
Sbjct: 258 FRHSRATELANH---LTQAQMEEHLGWIHGS-NMPQTYIHMSGKEVDDAILKMHGFKKDE 313

Query: 316 QTHPSITQK 324
           +T P +T +
Sbjct: 314 ETQPELTAR 322


>gi|297543544|ref|YP_003675846.1| integrase family protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296841319|gb|ADH59835.1| integrase family protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 373

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 60/336 (17%), Positives = 128/336 (38%), Gaps = 43/336 (12%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           E N   E     L +    WL+ +  E   +  TL S +     ++I    + E      
Sbjct: 52  EKNEFIEPSKITLQQFINEWLK-IYGEPKWAPKTLISNKSLINNYIIPNLGHIE------ 104

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            +++L   EI+ F +  + +++ + ++      +   LK+  K +   ++    +   KK
Sbjct: 105 -LQKLKPVEIQKFYNFLKEKQLSNTTVNYVHKLLNQVLKFAVKWQYIAKNPCELVEAPKK 163

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
                      + +T     +       K        ++ L    GLR+ E   L  ++I
Sbjct: 164 DKK--------EFVTWNFEHVKKAKKIFKDTPIYIHVMIAL--HTGLRLGEICGLRWEDI 213

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRK-------AILEYY-DLCPFDLNLNIQLPLFRGI 233
                T+ ++    +I    +    +        AI ++   +   + N  +Q  L  G 
Sbjct: 214 DFKNQTITVRRTAQRIDGRFIFKEPKTETSKGIIAIPDFLVQILKQEKNKQLQNKLIFGE 273

Query: 234 RGKPLNPGVF---------------QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
           +      G                 +++ + L++   +P+    H LRH+ AT +L +G 
Sbjct: 274 KYITEYEGFISVWEDGRFKEPDYVTKKFKKILQKQSEIPV-IRFHDLRHTHATLMLRSGV 332

Query: 279 DLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           DL++I   L H R+STT   Y++V+ +   + + ++
Sbjct: 333 DLKTISKRLRHGRISTTADFYSHVDLEMEREALRKL 368


>gi|228988955|ref|ZP_04148994.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229159077|ref|ZP_04287131.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 4342]
 gi|228624403|gb|EEK81176.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 4342]
 gi|228770774|gb|EEM19300.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 369

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/315 (17%), Positives = 111/315 (35%), Gaps = 39/315 (12%)

Query: 18  RQNWLQNLEIERGLS--KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            +++L +    + +S  + T   Y         F+  +    I + T+ +L+   I+   
Sbjct: 65  LEDYLNHWLEIKSMSIERSTFVGYR-------AFINQHVIPSIGMVTLHKLNVMHIQKCY 117

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                + I + S+      +KS L    K+ I + +        KK  +  +   E++  
Sbjct: 118 KTAIDRGIANNSVLLMHRILKSALNLAVKQNIISRNPADFAEIPKKERTSIQTWTEEEVK 177

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
                 LLH+      I         L    G+R+ E L L  Q++  ++ T+ I     
Sbjct: 178 KF----LLHSQESRYHIGY------LLAITTGMRMGEVLGLRWQDVDFEKHTVTINQTSG 227

Query: 196 KI-------------RIVPLLPSVRKAILEYYDLCPFDL-----NLNIQLPLFRGIRGKP 237
                          R +P+     +++ ++  L   +             +     G  
Sbjct: 228 HDNQIKKTAKTNSSKRTIPVPKETIESLKKHKVLINQEKLRLGSAYQDFDLINCNEFGMI 287

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
           +    F++   +     G+      H LRH+ AT LL  G + + I   LGH  +S T  
Sbjct: 288 IKKANFRKNFIRAIHNAGV-KEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLS 346

Query: 297 IYTNVNSKNGGDWMM 311
           +Y++V      + + 
Sbjct: 347 VYSHVLPNMQEEAVK 361


>gi|224027003|ref|ZP_03645369.1| hypothetical protein BACCOPRO_03762 [Bacteroides coprophilus DSM
           18228]
 gi|224020239|gb|EEF78237.1| hypothetical protein BACCOPRO_03762 [Bacteroides coprophilus DSM
           18228]
          Length = 407

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/299 (17%), Positives = 109/299 (36%), Gaps = 25/299 (8%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
            +  SY       L    F     +       L+    +++      +     +   +L 
Sbjct: 123 NSTSSYRQSKTSQLNLREFIGLRGMNDIAFEDLTEEFGKSYKLFLIGKGYSASNTNHNLC 182

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            ++  +     R +   + + ++   KK +   R ++    L +++     T  E K ++
Sbjct: 183 WLQRLVYIAVDRGLLKFNPLEDVGYEKKGSPKRRHISRNDLLLIME-----TPMEDKALE 237

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLR-IQGKGDKIRIVPLLPSVRKA 209
                +       GL   +  +L P +I    D +  +R  + K +    +PL P   + 
Sbjct: 238 LARR-MFVFSSLTGLAYVDLRNLYPHHIGMTADGRKYIREKRAKTNNEAFIPLHPIAEQI 296

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +  Y          +   P+F        +          L   LG+  + TAH  RH+F
Sbjct: 297 MSLYNT-------ADDSKPVFPLS-----SRDSMWFEFHSLGVALGITENLTAHVARHTF 344

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
             +++++G  + SI  ++GH  LS+TQ+Y  +        M ++    H   T++  +N
Sbjct: 345 GVNMVTSGISMESIAKMMGHSSLSSTQVYAVITDDKISKDMDKLM---HRRETKETDQN 400


>gi|218133921|ref|ZP_03462725.1| hypothetical protein BACPEC_01810 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991296|gb|EEC57302.1| hypothetical protein BACPEC_01810 [Bacteroides pectinophilus ATCC
           43243]
          Length = 413

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 120/343 (34%), Gaps = 63/343 (18%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-R 79
           + + +  +  L + T+++Y+    +F+             + I  + Y+++  F     +
Sbjct: 77  FDRYISTKAELRETTMRNYKYMYDRFIR-------GGFGKKKIAAVKYSDVLQFYQHLLK 129

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-----RNLKKSNSLPRALNEKQA 134
            +++   +L+   + +    +   +  I   +    +     +   K++ +  AL  +Q 
Sbjct: 130 EKEMQINTLETIHTVLHPTFQLAVRDNIIRVNPSDGVMAQIKKQPGKNHGVRHALTVEQQ 189

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-- 192
              +  +      +        ++    L G G RI EA+ +  ++I  ++ T+ I    
Sbjct: 190 RAFIRYI------DESPTFYHWASFFKFLLGTGCRIGEAIGIRWEDIDLEKRTISINHSV 243

Query: 193 ---------------------KGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQ 226
                                    IR +P++ +V  A+               +   ++
Sbjct: 244 VYYSREFKEHPICSFAVSLPKTEAGIRTIPMMDTVYDALQMELDDQKEHGFNETVIDGMK 303

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLG---------------LPLSTTAHTLRHSFAT 271
             +F    G   NP    R I+++                    +    + H LRH+F +
Sbjct: 304 GFIFMNRFGNIHNPQAVNRAIKRIYEAHNAEEVVKAAKQHREPVIIPHFSCHHLRHTFCS 363

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
               N  +L+ IQSI+GH  + TT  IY  V      + +  +
Sbjct: 364 RFCENETNLKVIQSIMGHANIETTMDIYAEVTDTKKQEAIQNL 406


>gi|210612842|ref|ZP_03289495.1| hypothetical protein CLONEX_01697 [Clostridium nexile DSM 1787]
 gi|210151395|gb|EEA82403.1| hypothetical protein CLONEX_01697 [Clostridium nexile DSM 1787]
          Length = 409

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 58/311 (18%), Positives = 112/311 (36%), Gaps = 36/311 (11%)

Query: 33  KLTLQS--YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           + T ++   +   +Q    +    E+K+  ++I  ++ ++ + +  + + +     ++  
Sbjct: 103 QNTQRANVKKSTMKQREQLMRLLKEDKLGARSIDTINPSDAKEWALRMKDKGFSYNTINN 162

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
               +K+      +     ++      + K S  L     EK ALT      L +  +T 
Sbjct: 163 HKRSLKASFYIAIQDDCVRKNPF----DFKLSEVLENDTKEKVALTEEQEQALLSFIKTD 218

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKG 194
            +  ++   + +L   GLRISE   LT  ++      + I                    
Sbjct: 219 NVYHKHYDDVLILLKTGLRISELCGLTIMDVDFIHEVVVIDHQLLKSKEQGYYIETPKTK 278

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIRGKP--------LNPGVF 243
              R VPL     +A        P             LF   +GKP        L   + 
Sbjct: 279 SGTRQVPLSKETIQAFQRVMKKRPKAEPFVIDGRGNFLFVNQKGKPKVAIDYNMLFVRMV 338

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVN 302
           ++Y +   +   LP   T HTLRH+F T L S   + + +Q I+GH  +S T   Y + +
Sbjct: 339 KKYNKHH-KDSPLP-HITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHAS 396

Query: 303 SKNGGDWMMEI 313
                  +  +
Sbjct: 397 IDTVKSEVQRL 407


>gi|186686693|ref|YP_001869887.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186469578|gb|ACC85376.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
          Length = 297

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/283 (19%), Positives = 107/283 (37%), Gaps = 14/283 (4%)

Query: 27  IER-GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           +ER GL+K TL+SY+      L     +        +I  +    +  +++      +  
Sbjct: 12  LERPGLAKSTLRSYQSTIIPLLKEYGRW--------SIEIIDRQVLMEYLNHLTD--VSY 61

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            +  R  + I +   +    +    + +  +R  K S          +A+  +    L  
Sbjct: 62  TTHHRHQAVITALFSFAVDMEYLKSNPVAGLRRRKPSREQGEHAT-DEAVRYLTPYQLSI 120

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
            +     D R SA++ LL+  G RI+E L+L    I       ++ GKG+K R       
Sbjct: 121 LYRVIKKDVRLSALVRLLHTSGARIAEVLALNLDEIDLKARKFQVVGKGNKQRWCFYSEV 180

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFR-GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
              ++  Y +      +  +        +    L+  +  +   +L R          H 
Sbjct: 181 ALNSLNHYIEYYRHPKHPALFTAQQPKTLEVSRLSYRMAHKSWIKLIRDSPELQEIRIHD 240

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           LRH+FAT  +   G +  +++++GH  + TT  Y  V S+   
Sbjct: 241 LRHTFATERVGLMG-IEELRALMGHESIQTTLRYQKVTSQRAE 282


>gi|160932995|ref|ZP_02080384.1| hypothetical protein CLOLEP_01837 [Clostridium leptum DSM 753]
 gi|156868069|gb|EDO61441.1| hypothetical protein CLOLEP_01837 [Clostridium leptum DSM 753]
          Length = 393

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 59/332 (17%), Positives = 121/332 (36%), Gaps = 55/332 (16%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L++ E + G+S   L SY+   R  L          + ++++ ++   +I++ I   
Sbjct: 69  EKFLKSKEAD-GVSVSQLNSYKNYCRNHLS--------PLYMKSLSEILPADIQSII--- 116

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTL 137
              K+   +LK   +      +   + +    +    +R  K +    R AL + Q    
Sbjct: 117 NETKLAKNTLKAIRNTASQIFRLAIENRAIDFNPADYVRIPKIAPEFHRDALTDDQ---- 172

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
               +  T H  +           L+   GLR  EA +LT  ++  +  T+ +    + I
Sbjct: 173 -QRWIRETPHRAQRAA-------MLMLYSGLRRGEATALTWADVDLNTGTISVTKSAEMI 224

Query: 198 RIVPLLPSVRKA----------ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
              P + + +            +L  +     D    + + +    RGK +    ++   
Sbjct: 225 NGKPHIKTTKTETGIRIVRIPQVLIDFLRNEKDSEFPLCMHVIHSARGKMMTNQAWRCMW 284

Query: 248 RQLRRYLGLPLS-------------------TTAHTLRHSFATHLLSNGGDLRSIQSILG 288
                 L +                       T H LRH+FA+ L   G D+ + +  LG
Sbjct: 285 DSYLLDLNVKYGYGGKINKFDPHGVVMRIPAFTPHWLRHTFASLLYRAGVDVLTARDQLG 344

Query: 289 HFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHP 319
           H  + TT  IYT+++       M ++ +  +P
Sbjct: 345 HSDIKTTLMIYTHLDKLYKEKHMDKLNEYLNP 376


>gi|95928522|ref|ZP_01311269.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
 gi|95135312|gb|EAT16964.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
          Length = 417

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 101/257 (39%), Gaps = 22/257 (8%)

Query: 62  TIRQLSYTEIRAFI-------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
            ++Q+    +  F+       S++  ++I   + K++LS +    +    + +   +   
Sbjct: 146 PLKQIDSRLVSEFVQQILTTVSQKTERRISGSTAKQALSLLSKLFQCAIDQHLVDANPCD 205

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            +R  K + S  R L+  +    +   +         ID   +  + +L   GLR SE L
Sbjct: 206 GVRRPKVNRSRERYLSGDEYPRFIKATM-------SLIDRPQAKAIMILAVLGLRPSEVL 258

Query: 175 SLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
            L   ++    + + I Q K  + R V L    R  + + Y     D      + +F   
Sbjct: 259 GLAWCDVHLIDNRIHIKQAKNGESRFVTLNSVARDLLQQLY-----DARKKRAVWVFPSR 313

Query: 234 RGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                       +   ++     LP     + LR S AT LL +G DL +I+  L H  L
Sbjct: 314 GKSSTGHLQSVSKTFERICNMAELP-EFNLYDLRRSHATFLLQSGVDLFTIKEALHHKTL 372

Query: 293 STTQIYTNVNSKNGGDW 309
           ++T +Y  V+S++  + 
Sbjct: 373 ASTMVYARVSSESMVNA 389


>gi|227547523|ref|ZP_03977572.1| integrase/recombinase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227211992|gb|EEI79888.1| integrase/recombinase [Bifidobacterium longum subsp. infantis ATCC
           55813]
          Length = 413

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 122/298 (40%), Gaps = 19/298 (6%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           L E V   L    + W   L    GL+  T+  Y      FL +L  +      + ++  
Sbjct: 115 LAEPVVPGLAVVMERWEAYLAGS-GLASATVGHYRRMAGLFLTWLESH-----GVVSLDG 168

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
              + +  F++  R++   + S++ + S ++   ++L +  +      + +  +++++++
Sbjct: 169 SDGSHVLGFLAGLRSR-WSESSMRHAASDLRPLFRWLGRDDLAD---AIGLAGIRRTHAI 224

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
              L + +   L++         ++ + +R++AI  L   CGLR  + + L   ++  D 
Sbjct: 225 AGTLPDDEHRRLLEACA------SRSVPSRDAAITLLSLTCGLRACDVIGLRIADVDWDS 278

Query: 186 STL-RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
            ++  +Q K      VP+   +   +  +        + +     ++             
Sbjct: 279 MSIGLVQRKTGNPLTVPMTGPLAARLASWLLDERPATDDDRVFVRYKAPHVALRGHSSVY 338

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY--TN 300
             I ++ R+ GL     +  LR + AT +L     L +I ++LGH    +T++Y  T+
Sbjct: 339 EAISRVMRHAGLGRRGGSRLLRRNAATRMLEAATPLPTISAVLGHADPDSTRVYMATH 396


>gi|167758741|ref|ZP_02430868.1| hypothetical protein CLOSCI_01083 [Clostridium scindens ATCC 35704]
 gi|167663481|gb|EDS07611.1| hypothetical protein CLOSCI_01083 [Clostridium scindens ATCC 35704]
          Length = 419

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 62/302 (20%), Positives = 120/302 (39%), Gaps = 25/302 (8%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
            KE  ++ +  E +RG    T+     +   FL  L     ++     +  ++   + +F
Sbjct: 118 FKELIDYYRQHERQRGKKDATINGQSHNAATFLHHL-----QEQGTSCLDNITEDAVLSF 172

Query: 75  ISKRRTQKIGDRSLKRSLSG-IKSFLKY--LKKRKITTESNILNMRNLKKSNSLPRALNE 131
                 + I   S K +++  +K+ L++   + R++      L     KK     + L +
Sbjct: 173 FISEDGELIRSSSYKNNVAAVLKACLEWKGPQCRRLLGYLPAL-----KKRRRNIQYLTK 227

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI- 190
           ++   +       T+ E + +  RN A++ LL   G+R S+   LT  +I  + +T+ I 
Sbjct: 228 EEVSAV------RTAIEQQPLSMRNRAVMLLLILTGIRSSDIACLTLDSIDWETATVCIC 281

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           Q K      +PL P +  AI +Y      D     +L L       PL     +  + ++
Sbjct: 282 QKKTGLPLELPLTPVIGNAIFDYLTQERPDTESR-RLFLSETWPFSPLADNSIENIVAKV 340

Query: 251 RRYLGL----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
            R  G+          H  RH+ A+ +L NG     I   LGH    + + Y + +  + 
Sbjct: 341 FRMAGIRQSPGERKGTHIFRHNAASSMLENGVQQPVISKTLGHSSPQSLETYLSADFVHL 400

Query: 307 GD 308
            +
Sbjct: 401 KE 402


>gi|319936530|ref|ZP_08010944.1| integrase [Coprobacillus sp. 29_1]
 gi|319808328|gb|EFW04888.1| integrase [Coprobacillus sp. 29_1]
          Length = 359

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 57/298 (19%), Positives = 108/298 (36%), Gaps = 34/298 (11%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           +Q    +    E+K+  ++I  +  ++ + +  + + +     ++      +K+      
Sbjct: 66  KQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMKDKGFSYNTINNHKRSLKASFYIAI 125

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           +     ++      + K S  L     EK ALT      L +  +T  +  +    + +L
Sbjct: 126 QDDCVRKNPF----DFKLSEVLENDTKEKVALTEEQEQALLSFIKTDNVYHKYYDDVLIL 181

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVR 207
              GLRISE   LT  +I      + I                      +R VPL     
Sbjct: 182 LKTGLRISELCGLTMADIDFTNEVVVIDHQLLKSKEQGYYIETPKTKSGVRNVPLSKETI 241

Query: 208 KAILEYYDLCPFDLNLNI---QLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGL 256
           +A            ++ I   +  LF   +GKP        L   + ++Y +  +    L
Sbjct: 242 QAFHRVIKKRSKIRSMEIDGHKDFLFINSKGKPKVAIDYTTLFVRMVKKYNKHHKDR--L 299

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
               T HTLRH+F T L S   + + +Q I+GH  +S T   Y + +       +  +
Sbjct: 300 LPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQRL 357


>gi|293377828|ref|ZP_06624013.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium PC4.1]
 gi|292643538|gb|EFF61663.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium PC4.1]
          Length = 407

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/296 (17%), Positives = 102/296 (34%), Gaps = 48/296 (16%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRT--------QKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           I    + + +  + + FI++  T        + +   + K   + + +  K   +     
Sbjct: 107 IGKYKLDKYTRADHQRFINQLLTKKGLGRTKEGLSVTTAKSINATLSNAFKKAIQLGYIK 166

Query: 110 ESNILNMRNLKKS--NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
            +    +   +        +     Q+   ++        E  +I         +++  G
Sbjct: 167 NNPTSFVEFPRNPSDKKKVKYYTFDQSELFLEF----AKKEKSFIWYP---FFLIIFDQG 219

Query: 168 LRISEALSLTPQNIMDDQSTLRIQ---------------------GKGDKIRIVPLLPSV 206
           LR SEAL L   +I   Q+TL I                            R +P+   V
Sbjct: 220 LRKSEALGLQWADIDFSQNTLNINRERLGAAEKGPNKGLIITDDTKTPSGTRSLPMTKRV 279

Query: 207 RKAILEYYDLCPFDLNL-----NIQLPLFRG----IRGKPLNPGVFQRYIRQLRRYLGLP 257
           +KA+L   +    +        + +  +F       +G P+          ++ +   LP
Sbjct: 280 KKALLTLRNQVIKEFGFLPETDDHEAFIFINTYGKNKGIPIRDRTVNGASHRIEKRASLP 339

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              T H  RH+FA      G  L  I+  LGH  +STTQ+Y +++ +     M ++
Sbjct: 340 -HITVHDGRHTFAARTRQAGIPLEDIKDFLGHKDVSTTQVYAHISPEVKKRSMNQL 394


>gi|268610071|ref|ZP_06143798.1| Phage integrase [Ruminococcus flavefaciens FD-1]
          Length = 386

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 61/309 (19%), Positives = 119/309 (38%), Gaps = 37/309 (11%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLK 89
           L   T+ +YE   R  +  +       +  + ++ ++   +  F+    +   +   S++
Sbjct: 86  LKPTTVLNYESQYRNHIAPI-------LGNKKLKDITTPMLTEFLKVLGKEHHLNPISVR 138

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLVDNVLLHTSHE 148
           +    ++S  +   ++    ++   N+   KK +S  R  L+E++    +  +       
Sbjct: 139 KVYIVVQSIYRRALQQGFARDNPCQNVIIPKKRDSGKRYSLSEEETKRFLHLI------R 192

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK--------------- 193
            K  D     IL +L   G+RI E L L  ++I  ++ T+ I                  
Sbjct: 193 DKPWDEDVKRILIVLLFTGMRIGECLGLAWEDIDFEKKTIFIHHTLSCVDGKCYLDSPKT 252

Query: 194 GDKIRIVPLLPSVRKAI---LEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIR 248
              IR++ +  +V K +     Y +     L      P  +F   +G   +       ++
Sbjct: 253 KSSIRLIAMNSTVEKYLNDQQAYVEQLKMALGNKYAHPEMVFPSGQGNYRDRSSVYHSLK 312

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGG 307
           ++ +        T H LRH  AT LL++G DL+ I   LGH  +  T  IY +V  K   
Sbjct: 313 RMTKGTEFE-DMTLHKLRHCNATLLLNSGVDLKVISEHLGHCDIGVTANIYADVLRKQKI 371

Query: 308 DWMMEIYDQ 316
                I D+
Sbjct: 372 RLADTIDDK 380


>gi|154500987|ref|ZP_02039025.1| hypothetical protein BACCAP_04674 [Bacteroides capillosus ATCC
           29799]
 gi|150270011|gb|EDM97530.1| hypothetical protein BACCAP_04674 [Bacteroides capillosus ATCC
           29799]
          Length = 361

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 60/322 (18%), Positives = 110/322 (34%), Gaps = 61/322 (18%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI-RAFISKRRTQKIGDRSLKRS 91
           + T  +Y+            Y  ++I    +  + Y++I R ++S    +     S++  
Sbjct: 39  ESTRGNYKY-------MYDKYIRDEIGYMKLANIKYSDIKRFYLSLIHEKGFKPNSMEII 91

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRN-LKK----SNSLPRALNEKQALTLVDNVLLHTS 146
            + +        +  I   +    + N +K+         +AL E Q    + + +  + 
Sbjct: 92  HTILHPVFSTAVRDGIIRLNPTDGVMNEIKRTHNWEKPKRKALTESQQSAFI-SYVSSSP 150

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-------------- 192
               W+      I  +L G G RI E + L  Q+    +  + I                
Sbjct: 151 TYKHWLP-----IFTVLLGTGCRIGEVVGLRWQDCDFAEGIISINHNLVYRKREKTGKMG 205

Query: 193 -------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-----IQLPLFRGIRGKPLNP 240
                      IRI+P+L  VR  +L+       D   +         +F    G+ ++P
Sbjct: 206 FHITTPKTSAGIRIIPMLEEVRHTLLQERLRQMEDGFNDTVIDGYSGFIFSSRYGEAISP 265

Query: 241 GVFQRYIRQLRR--------YLGLPL-------STTAHTLRHSFATHLLSNGGDLRSIQS 285
               R I ++ R                       + H LRH+F T    N  DL+ IQ 
Sbjct: 266 HCVNRAIERICRDYNAEETLRAKQEKRAPQLLPHFSCHNLRHTFCTRFCENEKDLKVIQE 325

Query: 286 ILGHFRLSTTQ-IYTNVNSKNG 306
           I+GH  ++TT  IY     +  
Sbjct: 326 IMGHADITTTMNIYNEATKERK 347


>gi|259047877|ref|ZP_05738278.1| phage integrase family site-specific recombinase [Granulicatella
           adiacens ATCC 49175]
 gi|259035554|gb|EEW36809.1| phage integrase family site-specific recombinase [Granulicatella
           adiacens ATCC 49175]
          Length = 393

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 59/334 (17%), Positives = 118/334 (35%), Gaps = 49/334 (14%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           F   +    WL  +  ++ +   T Q+        + +   +         I  ++  + 
Sbjct: 73  FTYRELYNEWL--VTYQKRVRPSTFQA-------TVTYFKKHILPAFGDYYIDTITIQDC 123

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK----KSNSLPR 127
           +A    R        +    +   +   KY +K  +  ++ +  +   K    K + L +
Sbjct: 124 QA-QVNRWYSNYPKSTQSYKIYA-QMIFKYAQKLNLIEKNPMSLVDLPKSGDFKDDKL-K 180

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
             + +  +  ++ +                   YLL   GLR  EA +LT  +I     +
Sbjct: 181 YYDRETLIRFLEYIEPFKEV---------YTFFYLLSYTGLRCGEAFALTWNDIDFRNHS 231

Query: 188 LRIQGK---------------GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
           + +                   + +R + +  S+ + I E+ +L         +  +F+ 
Sbjct: 232 ISVNKTVARSMEDKYISQTKTKNGMRTIRINGSLERLISEWKEL------SGNETYVFQN 285

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                 +      ++ Q+      P   T H  RH+ A+ L   G DL+ IQ  LGH  +
Sbjct: 286 RNNSFYSSNTAVYWLNQILEGTNFPR-ITPHGFRHTHASLLAEAGADLKDIQDRLGHGDI 344

Query: 293 STTQ-IYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
            TT  IYT+V + N  D   + +D+      QKD
Sbjct: 345 QTTANIYTHVTN-NKKDNTNDKFDKLMSIEGQKD 377


>gi|239906167|ref|YP_002952906.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239796031|dbj|BAH75020.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 348

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 112/286 (39%), Gaps = 30/286 (10%)

Query: 41  CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLK 100
              ++  + L  +       + + Q+ + EI + +  +   K    +  R L+ +K+  +
Sbjct: 87  RRLKELAVILERHIIPAFAQRPVEQIRFDEIIS-LVGKVYAKRSPVTRGRYLAYLKTVFQ 145

Query: 101 YLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
           +    ++  ++    +R  KK    PR  + +  +T ++ +         W        +
Sbjct: 146 FGVDNELIEKNP---LRRWKKPKERPR--DTRLTVTDLNKIKAAAEPHLAWA-------I 193

Query: 161 YLLYGCGLRI--SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
            + +  G+R   SE L+L   ++  +  T+ +     K R +         I + +    
Sbjct: 194 EVAWNLGVRTGPSELLALKWSDVDWENQTVTVYATKTKTRRIIP-------ISDEFLARL 246

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
            ++    Q P     +G+P+      R +R   R  G+      + +RH FAT LL  GG
Sbjct: 247 REVKEAAQSPFIVEYQGRPV--KQISRAMRTACRRAGITYPVVLYDVRHLFATTLLREGG 304

Query: 279 DLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQTHPSITQ 323
           DL ++ +++GH  +  T   Y ++        + ++     P + Q
Sbjct: 305 DLSAVSNLMGHSSIQMTANNYYHLLGDEKRRTIAKL-----PRLEQ 345


>gi|313900781|ref|ZP_07834273.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312954451|gb|EFR36127.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 397

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 57/298 (19%), Positives = 108/298 (36%), Gaps = 34/298 (11%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           +Q    +    E+K+  ++I  +  ++ + +  + + +     ++      +K+      
Sbjct: 104 KQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMKDKGFSYNTINNHKRSLKASFYIAI 163

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           +     ++      + K S  L     EK ALT      L +  +T  +  +    + +L
Sbjct: 164 QDDCVRKNPF----DFKLSEVLENDTKEKVALTEEQEQALLSFIKTDNVYHKYYDDVLIL 219

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVR 207
              GLRISE   LT  +I      + I                      +R VPL     
Sbjct: 220 LKTGLRISELCGLTMADIDFANEVVVIDHQLLKSKEQGYYIETPKTKSGVRNVPLSKETI 279

Query: 208 KAILEYYDLCPFDLNLNI---QLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGL 256
           +A            ++ I   +  LF   +GKP        L   + ++Y +  +    L
Sbjct: 280 QAFHRVIKKRSKIRSMEIDGHKDFLFINSKGKPKVAIDYTTLFVRMVKKYNKHHKDR--L 337

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
               T HTLRH+F T L S   + + +Q I+GH  +S T   Y + +       +  +
Sbjct: 338 LPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQRL 395


>gi|89147685|gb|ABD62701.1| integrase [uncultured bacterium]
          Length = 163

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/140 (31%), Positives = 63/140 (45%), Gaps = 2/140 (1%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           ++    +R S    L     + DQ   R+ G         L     +A +E+     F  
Sbjct: 25  VMLPTSVRASLVHHLGRVRQLHDQD--RVDGVSGVWLPEALSIKYPRADIEWGWQWCFPA 82

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
                 P    +R   L+     + I+       +  S + HTLRHSFATHLL +G D+R
Sbjct: 83  KGLSTDPRSGTVRRHHLHDNTLHKAIKTAASLARINKSVSCHTLRHSFATHLLESGADIR 142

Query: 282 SIQSILGHFRLSTTQIYTNV 301
           S+Q +LGH  L TTQIYT+V
Sbjct: 143 SVQELLGHESLETTQIYTHV 162


>gi|116626673|ref|YP_828829.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229835|gb|ABJ88544.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 314

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 64/291 (21%), Positives = 104/291 (35%), Gaps = 26/291 (8%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
             L + RGL    ++  E   ++F  FLA      IT+    + +             Q+
Sbjct: 10  DYLALRRGLGFKLVRH-EAGLKEFASFLARKRSSHITVALALERATQH--------AQQQ 60

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
             + +    L  ++ F +Y       TE   L +   + + + P   ++ +   L+    
Sbjct: 61  PAEWTA--RLCVVRGFARYWSATDPLTEVPPLGLLPYRPARAQPYFYSDHEIRKLLRAAK 118

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVP 201
              S +          +  LL   GLR+ EAL L   ++   +  L I+G K  K R+VP
Sbjct: 119 TRPSIDPLRPCTY-HCLFGLLAVTGLRLGEALGLRLGDMDWSEGILTIRGAKFGKSRLVP 177

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL----- 256
           L  S  K + +Y            +      + G  L+ G   R    L R +GL     
Sbjct: 178 LHTSTCKVLADYAKRRDERFGARAEGYFLVNLNGNRLDKGEVHRAFYLLSRQIGLRAVDA 237

Query: 257 PLSTTAHTLRHSFAT----HLLSNGGD----LRSIQSILGHFRLSTTQIYT 299
                 H  RH FA         NG D    L  + + LGH  ++ T  Y 
Sbjct: 238 SRGPRLHDFRHRFAVETLLRWYRNGEDPKRRLPILSTYLGHAHVTDTYWYL 288


>gi|307268429|ref|ZP_07549807.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|306515236|gb|EFM83773.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
          Length = 309

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 85/213 (39%), Gaps = 21/213 (9%)

Query: 103 KKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
               + +++    +    +  +   S  + LN+ +   L+  + L       W       
Sbjct: 90  VDEGLISKNPTRKIVIEGKAPRPKKS--KFLNQFEVQALLKELELGEQLNWDW------- 140

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212
            + L+   GLR SEAL+LTP++    +  + I+   +         S       RK  ++
Sbjct: 141 FILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGFFQSTKNESSKRKVQID 200

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +     F   +    P+        +        ++ L +   +P+  T H+LRH+ A+ 
Sbjct: 201 WQTAMQFSQLIRNMPPMEPIFVKGRVFNSTINNRLKVLCKRAQIPV-ITVHSLRHTHASL 259

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           LL  G  + S+ + LGH  ++TTQ  Y ++  +
Sbjct: 260 LLFAGVSIASVATRLGHSSMTTTQETYLHIIQE 292


>gi|219558655|ref|ZP_03537731.1| integrase [Mycobacterium tuberculosis T17]
 gi|260187668|ref|ZP_05765142.1| integrase [Mycobacterium tuberculosis CPHL_A]
 gi|260201779|ref|ZP_05769270.1| integrase [Mycobacterium tuberculosis T46]
 gi|289444189|ref|ZP_06433933.1| integrase [Mycobacterium tuberculosis T46]
 gi|289448303|ref|ZP_06438047.1| integrase [Mycobacterium tuberculosis CPHL_A]
 gi|289570821|ref|ZP_06451048.1| integrase [Mycobacterium tuberculosis T17]
 gi|289417108|gb|EFD14348.1| integrase [Mycobacterium tuberculosis T46]
 gi|289421261|gb|EFD18462.1| integrase [Mycobacterium tuberculosis CPHL_A]
 gi|289544575|gb|EFD48223.1| integrase [Mycobacterium tuberculosis T17]
          Length = 332

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 56/277 (20%), Positives = 99/277 (35%), Gaps = 45/277 (16%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQ---------------TIRQLSYTEIRAFISKRRTQK 82
           S+  D   +L+ L    +   TI+                   ++   +  ++ K+  Q 
Sbjct: 71  SWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLLDWLGKQ--QH 128

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +     K   S ++ F  +  +     +    ++  ++     PR   +     +    L
Sbjct: 129 LSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDD----VWQAAL 184

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
                 T+        ++ L    GLR +EA      + + D   L + GKG K RIVP+
Sbjct: 185 AKADRRTE-------LMIRLAGEAGLRRAEAAQAHTGD-LMDGGLLLVHGKGGKRRIVPI 236

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
              +   I +                LF    G  L      + + +      LP   T 
Sbjct: 237 SDYLAALIRD-----------TPHGYLFPNGTGGHLTAEHVGKLVSRA-----LPGDATM 280

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           HTLRH +AT       +LR++Q +LGH  + TT+ YT
Sbjct: 281 HTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYT 317


>gi|28867518|ref|NP_790137.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28850753|gb|AAO53832.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 412

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 56/325 (17%), Positives = 114/325 (35%), Gaps = 48/325 (14%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYE--CDTRQFLIFLAFYTEEKITIQTIRQ 65
           E  +   +    ++L +   E   ++    +       R     L       I  + + Q
Sbjct: 97  EKRTGAAMPTLDHFLTH-TFEPWAAEHHRDAKNGNRAIRHSFEALLSIPLSSIDTKRVEQ 155

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS-NS 124
           +    +RA         +   +  R+++ ++  L    +  +  E   L +R LK    S
Sbjct: 156 IRTAWLRA--------GLAPSTANRNITRLRGVLSRALEWGVLQEHP-LKVRKLKVDDRS 206

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY----------------------- 161
             R L+ ++   L + +   ++      D+ N   L                        
Sbjct: 207 RVRYLSIEEETALREALEARSNEMRDARDSANKWRLERHKEPLADLRAVRYADHLEPLVV 266

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCP 218
           L    G+R  EA +LT  ++      + ++G   K  + R VPL       + ++ +   
Sbjct: 267 LSINTGVRRGEAFNLTWADVDLKNKLITVEGDTSKSGQTRHVPLNREALDTLTKWKEQR- 325

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
                     +F G  GK L+    ++    L +   +      H LRH+FA+ L+  G 
Sbjct: 326 -----GGNGFVFPGQHGKRLD--NVKKSWSGLLKLAKVER-FRWHDLRHTFASKLVMAGV 377

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNS 303
            L +++ +LGH  +  T  Y ++  
Sbjct: 378 PLNTVRELLGHTDIKMTLRYAHLAP 402


>gi|167769658|ref|ZP_02441711.1| hypothetical protein ANACOL_00992 [Anaerotruncus colihominis DSM
           17241]
 gi|167668019|gb|EDS12149.1| hypothetical protein ANACOL_00992 [Anaerotruncus colihominis DSM
           17241]
          Length = 410

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 62/331 (18%), Positives = 119/331 (35%), Gaps = 60/331 (18%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           L   T  +Y        ++  +  EE      + Q+  ++I AF +K         SL+ 
Sbjct: 85  LKPSTRANY------LYLWDFYVKEEPFANMPLPQIHRSDILAFYTKLLKHGFAINSLES 138

Query: 91  SLSGIKSFLKYLKKRKITTESNILNM-RNLKKSNSLPR-----ALNEKQALTLVDNVLLH 144
             + +   L+         ++    + R LK   S P+     AL + Q    +   +  
Sbjct: 139 INTIVHPTLEMAVDDDYIRKNPSKGIYRKLKTDGSAPKPKRRIALTKTQQQNFLR-FIAK 197

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG------------ 192
           +   + W+      I+ +L G G+R++E   +T  +I   ++T+ +              
Sbjct: 198 SPTYSHWLP-----IMTVLLGTGMRVAECTGITKSDINLSENTISVNHNLIYRVIDGKAG 252

Query: 193 --------KGDKIRIVPLLPSVRKAI------LEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
                   +     I  L P V + +      ++        +   +   +FR   G  +
Sbjct: 253 FHITTPKTESGTRIIPILYPEVAEQLRLQIETIDALYPDDQLVLGGVHGFVFRNRTGSFM 312

Query: 239 NPGVFQRYIRQLR---------------RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
           +     R I ++                R   L    + H LRH+F T L  +  D++ I
Sbjct: 313 SAHNINRAIERISVTYNMEEMDQAELEDREPDLLPHFSVHNLRHTFCTRLCESTNDVKFI 372

Query: 284 QSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
           Q ++GH   STT  IYT++  +N  +    I
Sbjct: 373 QQVMGHADFSTTMDIYTHITQENMQEKAKNI 403


>gi|56414164|ref|YP_151239.1| DNA recombinase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197363087|ref|YP_002142724.1| DNA recombinase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56128421|gb|AAV77927.1| probable DNA recombinase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197094564|emb|CAR60085.1| probable DNA recombinase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 188

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/174 (24%), Positives = 68/174 (39%), Gaps = 7/174 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L +++   L+      ++ +      RN  ++ + +  G R SE L L   +I     
Sbjct: 4   KYLTQEEIEKLL------SATDRMPFPERNHCLILMAFIHGFRASELLGLRLSDIDLAGR 57

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            L I+  K       PLLP     +  +     +         LF  +R  PL+   F  
Sbjct: 58  QLYIRRLKNGFSTCHPLLPDEYNVLKSWLRARKYLEKGADGDWLFLSLRRHPLSRQQFFY 117

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            +R+  R   L ++   H LRH+    L   G D R IQ  LGH  +  T  YT
Sbjct: 118 ILREAGRLAELTIAPHPHMLRHACGYALADKGIDTRLIQDYLGHRNIQHTVRYT 171


>gi|317120860|ref|YP_004100863.1| integrase family protein [Thermaerobacter marianensis DSM 12885]
 gi|315590840|gb|ADU50136.1| integrase family protein [Thermaerobacter marianensis DSM 12885]
          Length = 369

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 121/330 (36%), Gaps = 54/330 (16%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ELL E   WL ++   R     T   Y   TR+                 + +L+  +I+
Sbjct: 64  ELLDE---WLAHVRTNRE--GRTYDDYAYCTRRIRA--------AFGPMRVDRLTRAQIQ 110

Query: 73  AFISKR--------RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            ++ +         R   +   ++++    + + L Y  +      +   N+   ++  S
Sbjct: 111 RWLDELQQAPRDDGRPGNLSATTVQKHHRALHAALSYAVRMGYLGYNPADNLTLPRRQRS 170

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
            P  L  +Q   L++  L      T+W      A        GLR+ E   L  ++I   
Sbjct: 171 EPPMLTREQLEQLLEAAL-----GTRWYPLWYVA-----AHTGLRVGELCGLWWEDIDWS 220

Query: 185 QSTLRIQG----------------KGDKIRIVPLLPSVRKAILEYYDLCPFDL----NLN 224
           +  +R++                 K  + R+V L     + +  +      ++       
Sbjct: 221 RPAIRVRRALKQDREGKRLILGDVKNHEARVVWLDDRTAEVLDRHRAEQQLEIARAQRWE 280

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS-NGGDLRSI 283
               +F    G+ L P V  + +R+  + LGLP   + H LRH   +HLL  +G  + ++
Sbjct: 281 HPEHVFTAPGGRFLRPDVPTQVLRKHAKRLGLP-PLSMHDLRHIHGSHLLQYHGWSITAV 339

Query: 284 QSILGHFRLS-TTQIYTNVNSKNGGDWMME 312
              LGH+  + T ++Y +V       ++  
Sbjct: 340 SERLGHYSPAFTAEVYAHVIPGAQEGYLRR 369


>gi|16766051|ref|NP_461666.1| phage tail-like protein [Enterobacteria phage Fels-2]
 gi|169936064|ref|YP_001718763.1| P2 Int-like protein [Enterobacteria phage Fels-2]
 gi|197250527|ref|YP_002147666.1| phage integrase [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|200388896|ref|ZP_03215508.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|16421285|gb|AAL21625.1| Fels-2 prophage protein [Enterobacteria phage Fels-2]
 gi|197214230|gb|ACH51627.1| phage integrase [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|199605994|gb|EDZ04539.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|312913759|dbj|BAJ37733.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321223527|gb|EFX48592.1| Phage integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
          Length = 341

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 58/317 (18%), Positives = 108/317 (34%), Gaps = 57/317 (17%)

Query: 19  QNWLQNLEIERGLSK-----LTLQSYECDTRQFLIFLAFYTE--EKITIQTIRQLSYTEI 71
           + WL   E  R LS+      +L  Y          +A  +     +      +L+  + 
Sbjct: 49  KPWLGEKEDRRHLSEVIDQWHSL--YGQTLADPKRLMAKLSIICNGLGDPIASELTAGDF 106

Query: 72  RAFISKRRTQKIG-----------DRSLK---RSLSGIKSFLKYLKKRKITTESNILNMR 117
             +   R   ++             R++    R+LS +  F    K    +  + +  + 
Sbjct: 107 TKYREARLKGEVKNEDGVLMSPVKPRTVNLEQRNLSSV--FGTLKKLGHWSAPNPLAGLP 164

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             K +      L  ++   L+D      S            I  +    G R SEA +L 
Sbjct: 165 TFKIAEGELAFLAPEEIKRLLDACADSQS-------PSLLMIAKVCLATGARWSEAENLQ 217

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
             + +        + KG K R VP+   +   +                 P  RG    P
Sbjct: 218 -GHQLSKYRITYTKTKGKKNRTVPISQDLYDEL-----------------PKNRGKLFTP 259

Query: 238 LNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                 ++   +  +  G+  P     H LRH+FA+H + NGG++  ++ ILGH  +  T
Sbjct: 260 C-----RKAFERAVKRAGIELPEGQCTHVLRHTFASHFMMNGGNILVLRDILGHADIKMT 314

Query: 296 QIYTNVNSKNGGDWMME 312
            +Y +    +  D + +
Sbjct: 315 MVYAHFAPDHLEDAVTK 331


>gi|303245973|ref|ZP_07332255.1| integrase family protein [Desulfovibrio fructosovorans JJ]
 gi|302492756|gb|EFL52624.1| integrase family protein [Desulfovibrio fructosovorans JJ]
          Length = 395

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 104/277 (37%), Gaps = 27/277 (9%)

Query: 41  CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLK 100
            D  +F  +L     EK  ++ +  L    +R   S+   Q    +++K  L+  K  ++
Sbjct: 113 TDRSRFEKYLKPTFGEKDPVEVLT-LDLDRLR---SRLLKQGKSPQTVKHVLALFKRLVR 168

Query: 101 YLKKRKITTESNILN--MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           +  K+ +    +     +   +  N     L+  +   LV  +    + +          
Sbjct: 169 FGVKKGLCDSPDPRKQTISMPRVDNETTEDLDADELARLVQAIEDEPNIQAAN------- 221

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
            + L    G+R  E   L  +++  ++  + I+           L    + +LE +    
Sbjct: 222 FMRLAMFTGMRRGELFKLEWRDVDFERGFIHIRHPKGGKSQKIPLNDAARGVLEDHPH-- 279

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-HTLRHSFATHLLSNG 277
               ++    +F G  GK       Q    +++   GLP      H LRH FA+ L S+G
Sbjct: 280 ----VDGTPYVFPGQGGKQ--RVTIQVASNRIKTRAGLPADFRPLHGLRHLFASTLASSG 333

Query: 278 -GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             D+ ++Q +L H     T+ Y+++      D + + 
Sbjct: 334 QVDMLTLQKLLTHKSPQMTKRYSHL----RDDALKQA 366


>gi|94968162|ref|YP_590210.1| phage integrase [Candidatus Koribacter versatilis Ellin345]
 gi|94550212|gb|ABF40136.1| phage integrase [Candidatus Koribacter versatilis Ellin345]
          Length = 454

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/293 (18%), Positives = 110/293 (37%), Gaps = 20/293 (6%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T++        +   L  +       + I  ++  +++ F++ +   K    +L+     
Sbjct: 169 TIK--RNTAGYYQKILRCHILPTFGQREIGSITREDVQTFLASQ-AGKYSRNTLRGMRVS 225

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPR--ALNEKQALTLVDNVLLHTSHETKWI 152
           +   L +        ++    +          +   L  +Q   + D            +
Sbjct: 226 LGRILTWAVNCAWLEKNPCSKVPLPHVEKGEIQRSILMTEQVTAIADK-----------L 274

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           +     ++ LL   GLRI EA+ +   +   D   +       K        S RK  + 
Sbjct: 275 EEPYRTLVLLLAVTGLRIGEAIGIKWSDFDGDILHVSRTIYDGKADSTKTASSNRKLPIP 334

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPG-VFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
              +    +  + +  +F    G P+NPG   +RY+R   + LG+ L T  H  RH+ AT
Sbjct: 335 AALISRMRMLGDGEF-IFHSRAGSPVNPGNALKRYLRPAAKALGIRL-TGWHDFRHTQAT 392

Query: 272 HLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            LL +G   + +  ILGH  +  T  +Y +  ++     +  I DQ  P++T+
Sbjct: 393 QLLRSGSSPKVVSGILGHSDVGITLNVYEHTETEIFRAPLERIADQLLPTVTK 445


>gi|257894525|ref|ZP_05674178.1| site-specific recombinase [Enterococcus faecium 1,231,408]
 gi|314949949|ref|ZP_07853247.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
 gi|257830904|gb|EEV57511.1| site-specific recombinase [Enterococcus faecium 1,231,408]
 gi|313643717|gb|EFS08297.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
          Length = 392

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 63/335 (18%), Positives = 131/335 (39%), Gaps = 59/335 (17%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q W +     R L++  + +Y+    Q  I   +  +EK     +  LS  E++ F+   
Sbjct: 66  QKWFEYY---RSLNEQKIATYDKREEQVEILNRWIGDEK-----LSSLSSEELQKFLFIL 117

Query: 79  RTQK-------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP----- 126
           + +            SL+  +  +    KY  K+ +T E+ +  ++  K   ++      
Sbjct: 118 KEKGINGVDVGYAKNSLQSLVQVLNMIFKYCMKKNLTNENPMKFVKMPKYQLTVKDLKES 177

Query: 127 ------RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                 + L   +  T ++  ++       + +   S + ++L+  G R+SEAL+L PQ+
Sbjct: 178 VNSLEDKFLTVDELRTFLNYGII-------YEELPMSVLFHVLFYTGCRVSEALALQPQD 230

Query: 181 IMDDQSTL---------------RIQGKG--DKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
           I  +++ +               RI+        R VP+ P V + + E  D+       
Sbjct: 231 IDFERNEILFYKQTAVKGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRN 290

Query: 224 N----IQLPLF----RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
           +     +  LF     G RG P        ++++     G+      H  RH+ A+ L++
Sbjct: 291 SNFVVDETYLFVYLDPGKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMAS-LVA 349

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                  ++  LGH   +T++IY ++ S      +
Sbjct: 350 EYCSWDVLKDRLGHTDSTTSKIYRHLTSNERKKPL 384


>gi|108803190|ref|YP_643127.1| phage integrase [Rubrobacter xylanophilus DSM 9941]
 gi|108764433|gb|ABG03315.1| phage integrase [Rubrobacter xylanophilus DSM 9941]
          Length = 277

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/271 (18%), Positives = 104/271 (38%), Gaps = 26/271 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  T + Y  D R+F  FLA     +  ++  R++    +  F +     +    ++ R 
Sbjct: 21  SPRTAEFYAADLREFARFLA-----ERGVEEAREIRAGHVMEFRNHLLEGRRKRFTVYRK 75

Query: 92  LSGIKSFLKYLKK--RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
            + ++ FL++++           I  +        +   L +++   L+   L       
Sbjct: 76  DAAVRRFLEWVRTSTDAGLELDPIEPVHQPLDQRIV--FLEDEEVDQLLSFPL------N 127

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK--IRIVPLLPSVR 207
           +  D R++A++ L+   G+ + E  +L   ++  +   +R+ G G     R   + P   
Sbjct: 128 RREDLRDAAVIRLMLETGVTVGEIRALLRSDVDLEAGQVRLGGPGSHLAPRTRRISPETA 187

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           + +  Y +    D        L  G   +P+      Q  + +    +G+    +   LR
Sbjct: 188 RVLRRYLESRDDDTPE-----LIVGRAARPVATSKALQNAVWKRCEQVGM-WRVSPMNLR 241

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           H+FA  LL  G  L  ++  +G     TT I
Sbjct: 242 HTFAVRLLRRGATLNELREAMGVRD--TTNI 270


>gi|257078400|ref|ZP_05572761.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|294780397|ref|ZP_06745764.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis PC1.1]
 gi|256986430|gb|EEU73732.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|294452526|gb|EFG20961.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis PC1.1]
 gi|329575632|gb|EGG57165.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1467]
          Length = 309

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 85/213 (39%), Gaps = 21/213 (9%)

Query: 103 KKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
               + +++    +    +  +   S  + LN+ +   L+  + L       W       
Sbjct: 90  VDEGLISKNPTRKIVIKGKAPRPKKS--KFLNQFEVQALLKELELGEQLNWDW------- 140

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212
            + L+   GLR SEAL+LTP++    +  + I+   +         S       RK  ++
Sbjct: 141 FILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGFFQSTKNESSKRKVQID 200

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +     F   +    P+        +        ++ L +   +P+  T H+LRH+ A+ 
Sbjct: 201 WQTAMQFSQLIRNMPPMEPIFVKGRVFNSTINNRLKVLCKRAQIPV-ITVHSLRHTHASL 259

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           LL  G  + S+ + LGH  ++TTQ  Y ++  +
Sbjct: 260 LLFAGVSIASVATRLGHSSMTTTQETYLHIIQE 292


>gi|38490044|gb|AAR21613.1| integrase [Salmonella enterica subsp. enterica serovar Newport]
          Length = 183

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 87/202 (43%), Gaps = 28/202 (13%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVNWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPS 205
             T+ ++ GKG K R + L  S
Sbjct: 162 HGTIIVREGKGSKDRALMLPES 183


>gi|330831608|ref|YP_004394560.1| integrase domain-containing protein [Aeromonas veronii B565]
 gi|328806744|gb|AEB51943.1| Integrase domain protein SAM domain protein [Aeromonas veronii
           B565]
          Length = 409

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 71/362 (19%), Positives = 124/362 (34%), Gaps = 80/362 (22%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ++ N LP+ +          + + L   +  S  T ++Y      F+ F+          
Sbjct: 40  LDDNGLPDQI-------LDGFCKYLLCPQRASIQTWKTYANQVSIFIRFMTAQG------ 86

Query: 61  QTIRQLSYTEIRAFI------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
           ++ +Q +  ++  +         +    + DRS   + S I    +Y   + +   +   
Sbjct: 87  KSWQQATKCDLDLYYTIRTSGEYQNQPALKDRSWNVAKSAIVHLYEYALDKGLIDSTPFK 146

Query: 115 NMRNLKK------------SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
             R+               +   P  +N               ++       RN A++  
Sbjct: 147 YRRSKTMFGGKHVETADLSAKYTPEPVNFISITNYQRIWRPLIANGEN--SQRNLALIDT 204

Query: 163 LYGCGLRISEALSLTPQ---NIMD------DQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
           L   GLRISEAL+L      +  D        +TL++ GKG K R V +   + +AI  Y
Sbjct: 205 LIVSGLRISEALNLDVHQLPDPDDQCYAGLKSTTLKVVGKGKKSRDVRIPKRIVRAIRFY 264

Query: 214 YDL------------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            D                  +      +F    G+PL+    + +   +    G+    T
Sbjct: 265 CDEERAEILTRAKSDHTRKKSPKQSSKIFLARTGRPLSSRTVESFFAAISNRAGI--RLT 322

Query: 262 AHTLRHSFATHLL---------------SNGGD---------LRSIQSILGHFRLSTTQI 297
            H  RH+FA + L                NG D         LR +Q +LGH  +STT I
Sbjct: 323 PHGCRHTFAIYQLDAMIKRMAQNLRELRENGSDAYRQILNDPLRELQKLLGHSHISTTYI 382

Query: 298 YT 299
           Y 
Sbjct: 383 YL 384


>gi|254498949|ref|ZP_05111653.1| Phage integrase [Legionella drancourtii LLAP12]
 gi|254351853|gb|EET10684.1| Phage integrase [Legionella drancourtii LLAP12]
          Length = 191

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 79/199 (39%), Gaps = 16/199 (8%)

Query: 116 MRNLKK----SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
           M+  KK    +  +   L   +   L+     H +  T     R++ ++ + +  GLR+S
Sbjct: 1   MKPPKKIKNSARRVREHLTPAEIDALI-----HAAKSTGRHGLRDATMILMAFRHGLRVS 55

Query: 172 EALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
           E +SL   ++   Q  L + + K       PL     +A+           +      +F
Sbjct: 56  ELVSLRWSHVDLKQGLLYVVRLKNGIASQHPLFGPELRAL------RQLQRDYPDTDYIF 109

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
              R  P+    F++ + +      + +    H LRHS    L ++G D RSIQ  LGH 
Sbjct: 110 MSERLSPMTTDTFRKIVARAGELAKIGMPIHPHMLRHSTGFKLANDGRDTRSIQHYLGHK 169

Query: 291 RLSTTQIYTNVNSKNGGDW 309
            +  T  YT + +    ++
Sbjct: 170 NIQHTVRYTEIAAIRFKEF 188


>gi|300775106|ref|ZP_07084968.1| integrase [Chryseobacterium gleum ATCC 35910]
 gi|300505846|gb|EFK36982.1| integrase [Chryseobacterium gleum ATCC 35910]
          Length = 308

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 105/267 (39%), Gaps = 26/267 (9%)

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +   ++++F+ ++    +  +++K  L  +K  LK+  K K    +        ++    
Sbjct: 48  IEEADVQSFVFQKLETGLSHKTIKDILIVLKMILKFGAKNKWLQYTPFDIQFPTEREKHN 107

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
              L +     +++ +  H +             +Y+    G+RI E  +LT ++I  D 
Sbjct: 108 IEVLTKTDQKKIMNYIQEHFTFRNLG--------VYICLSAGMRIGEVCALTWEDIDTDN 159

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR-------------- 231
             + I     +I ++       + IL+          + I   L R              
Sbjct: 160 GIISINRTIQRIYVIEDGTRRTELILDTPKTKNSIREIPISKDLLRILKPFKKIVNQSFF 219

Query: 232 --GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
                 KP  P  ++ Y + L + L +P     H LRHSFAT  + +  D +++  +LGH
Sbjct: 220 VLTNDAKPTEPRTYRSYYKNLMKELKMP-ELKFHGLRHSFATRCIESNCDYKTVSVLLGH 278

Query: 290 FRLSTT-QIYTNVNSKNGGDWMMEIYD 315
             +STT  +Y + N +     + +++ 
Sbjct: 279 SNISTTLNLYVHPNMEQKKKAIEQMFK 305


>gi|300779338|ref|ZP_07089196.1| integrase [Chryseobacterium gleum ATCC 35910]
 gi|300504848|gb|EFK35988.1| integrase [Chryseobacterium gleum ATCC 35910]
          Length = 407

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 110/291 (37%), Gaps = 24/291 (8%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGD 85
           IE+  ++ TL  Y+   +    FL +     IT   I+++ Y  +  F    RT++   +
Sbjct: 124 IEKEFAQGTLTRYKTCLKHTKDFLKWKY--SITDIEIKKIDYAFLNDFEFFLRTERSCNN 181

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            S  + +      ++             +N  + K +      LNE++   L       T
Sbjct: 182 NSAVKYIKNFGKIVRICLANGWIERDPFMNYHS-KFNEVTRMFLNEQEIEVLF------T 234

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD----QSTLRIQGKGDKIRIVP 201
              T    +    I       GL   +   LT QNI       Q     + K      +P
Sbjct: 235 KDFTNERLSLVRDIFLFSCFTGLAYIDTQKLTYQNINLGLDGSQWIYTKRQKTKTTSNIP 294

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           +L    K I +Y +     LN    LP+        L+      Y++++    G+    T
Sbjct: 295 ILSQTEKIIKKYKNHPAC-LNSGKLLPI--------LSNQKMNAYLKEIADLCGINKELT 345

Query: 262 AHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            H  RH+FAT + LSNG  + S+  +LGH  + TTQ Y  +      + MM
Sbjct: 346 YHIARHTFATTVTLSNGVSIESVSKMLGHKSIKTTQHYAKILDSKVSEDMM 396


>gi|89147375|gb|ABD62548.1| integrase [uncultured bacterium]
          Length = 163

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/94 (41%), Positives = 54/94 (57%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A  E+     F  +     P    +R   ++P V QR +R   R  G+    T HTLRH
Sbjct: 69  RAGKEWMWQYVFPADRMSNDPRGGVVRRHHVDPQVIQRALRDALRRAGISKPATPHTLRH 128

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFATHLL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 129 SFATHLLESGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|332749399|gb|EGJ79817.1| phage integrase family protein [Shigella flexneri 4343-70]
 gi|332996513|gb|EGK16139.1| phage integrase family protein [Shigella flexneri K-218]
          Length = 198

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 70/174 (40%), Gaps = 7/174 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R L  K+   ++  V    +       AR+  ++ L Y  G+RISE L L  Q++  ++ 
Sbjct: 5   RYLTGKEVQAMMQAVCYGAT------GARDYCLILLAYRHGMRISELLDLHYQDLDLNEG 58

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            + I+  K     + PL    R+A+  +          +    +F   RG  L+     R
Sbjct: 59  RINIRRLKNGFSTVHPLRFDEREAVERWTQERANWKGADRTDAIFISRRGSRLSRQQAYR 118

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            IR      G    T  H LRH+    L   G D R IQ  LG+  +  T  YT
Sbjct: 119 IIRDAGIEAGTVTQTHPHMLRHACGYELAERGADTRLIQDYLGNRNIRHTVRYT 172


>gi|317500300|ref|ZP_07958526.1| integrase/recombinase XerD [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316898308|gb|EFV20353.1| integrase/recombinase XerD [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 426

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/336 (16%), Positives = 133/336 (39%), Gaps = 44/336 (13%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ- 81
           + L+ + G+ + T Q Y    R          +E    +TIR +  ++ + F+ K + + 
Sbjct: 94  RYLKTKTGVRQSTKQGYVTVQRLLA-------KETFGKKTIRSVKTSDAKLFLIKLQQED 146

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLKKSNSLPR-ALNEKQALTLVD 139
                S+      ++   +      I  ++     +  +  ++++ R  + + Q    + 
Sbjct: 147 GKSYSSIHTIRGVLRPAFQMAVDDDILVKNPFGFQLAGVLVNDAVTREVIYKDQMRKFLK 206

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            V             +   ++Y+L+  G+RISE   LT ++I  ++ T+ I  +  +   
Sbjct: 207 FV------HDDVAYCKYYEVVYILFHTGMRISEFCGLTLKDIDLEKMTVNIDHQLQRTSD 260

Query: 200 VPLLPSVRK-------------------AILEYYDLCPFDLNLN-IQLPLFRGIRGKPLN 239
           +  +    K                   AI+E  +    + +++     LF    G PL 
Sbjct: 261 MRYIIETTKTDAGTRVLPITEDVAEMFQAIIEDRNASKVEKDIDGYSGFLFYDDNGMPLV 320

Query: 240 PGVFQRYI-RQLRRYLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              +Q      + RY  +      + T H  RH++ +++   G + +++Q ++GH  +S 
Sbjct: 321 AMHWQHRFNHMVGRYNDIYRVQMPNITLHVCRHTYCSNMAKPGMNPKTLQYLMGHSDISV 380

Query: 295 TQ-IYTNVNSKNGGDWMMEI--YDQTHPSITQKDKK 327
           T  +YT++   +  + +  I  + +    + QK +K
Sbjct: 381 TMNVYTHIGFDDAEEELKRIEEFRKARAEVEQKKEK 416


>gi|255009706|ref|ZP_05281832.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           3_1_12]
          Length = 406

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/286 (20%), Positives = 114/286 (39%), Gaps = 26/286 (9%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSLKRSL 92
            T+Q YE  TR    F+    E +++   +  L    I  F +  +  +     S    L
Sbjct: 132 KTVQRYETTTRYLEEFIK--KEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSSITRL 189

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +K  ++   +     +      R  K   + P  L   +   ++         E    
Sbjct: 190 KNLKKIIRIALENDWIKKDPFAYYR-FKLEETDPEFLTMDEIKIILAKEFTIKRVEQ--- 245

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQG---KGDKIRIVPLLPSVRK 208
             R+  I  +    GL  S+   L+P++++ D++  L I+    K   +  +P+LP    
Sbjct: 246 -VRDVFIFGVF--TGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAVS 302

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            + +Y ++      L   LP+        L+      Y++++    G+  + + HT RHS
Sbjct: 303 ILEKYKNVAECTGKL---LPV--------LSNQRMNSYLKEIADVCGIHKNLSTHTARHS 351

Query: 269 FAT-HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +AT   L+NG  + ++  +LGH   S T+ Y  V  +N    M ++
Sbjct: 352 YATSICLANGVSMENVAKMLGHADTSITKHYARVLDQNIFKDMQKV 397


>gi|22094596|gb|AAM91928.1|AF525419_1 site-specific recombinase [Xenorhabdus nematophila]
          Length = 187

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 74/180 (41%), Gaps = 8/180 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L   +   ++         +      R+  +L + +  G R+SE  +L+  ++  + +
Sbjct: 5   KFLTRYEIDAIL------AETKQGRHAERDYCMLLMCFLHGFRVSELCNLSLSDLDLNSA 58

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            + I+  KG      PL+P    A+ ++ D+   +        +F   +   ++      
Sbjct: 59  IIHIRRLKGGLSTTHPLIPEEIDALKKWLDVRQ-EWREADSPWVFLSQKSGAVSRQQVYG 117

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +++  +   + +S   H LRH+    L   G D R IQ  LGH  +S T IYT  N K 
Sbjct: 118 LLKRYGKKASVSVSPHPHMLRHACGYALADLGRDTRLIQDYLGHRNISHTVIYTASNVKR 177


>gi|319783595|ref|YP_004143071.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169483|gb|ADV13021.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 439

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 58/292 (19%), Positives = 102/292 (34%), Gaps = 41/292 (14%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISK------RRTQKIGDRS-------------LKR 90
           L  +    I  + I +++  +I   ++        + +KIG R              + R
Sbjct: 141 LRHHVVPLIGKKRISEVTSRDIEQLVADITAGKTAKDEKIGPRRRIIVKGGAGAARKVAR 200

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           +LS +     +  +RK+  ++ + +    K      R L  ++   L          E +
Sbjct: 201 NLSSV---FSFAVRRKLIAQNPVTDAEINKVDGKRTRYLFLEEIGRL---GKALDELEAE 254

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
            ++ +   I+ L    G R  E  +L    +  D   L +        + PL       +
Sbjct: 255 GVNPKALDIVRLWALTGCRRDEIAALKWSEVNIDLGCLVLDDTKTGKSVRPLAAPAAALL 314

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
                    D        +F   RG     G  +R   ++ +  GLP   T H LRHS  
Sbjct: 315 AALPRYADADRPEGRSKWVFPASRGDGHFQGT-KRIWPKVTKKAGLP-GVTPHVLRHSLG 372

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           +  +S G  L  + +ILGH    +TQIY +V              Q HP+  
Sbjct: 373 SAAVSGGMALPMVAAILGHADTRSTQIYAHV--------------QMHPAAK 410


>gi|291551327|emb|CBL27589.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 306

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 107/298 (35%), Gaps = 31/298 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +   L +    +K T+Q Y  D + F  +          I   + ++   +  +     
Sbjct: 17  EFATYLHVREN-AKATIQKYTSDIKAFFQY----------IDEDKCINKEILLQY-KDCL 64

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            QK    S+   L+ +  FL++L    +        +R +K     P    +K+      
Sbjct: 65  IQKYAINSVNSILAALNQFLEFLGTGNL-------KVRRIKIQKQ-PFIQTQKELTRKEY 116

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
             L++ + +        +  +  +   G+RISE    T +     +  + I  KG   R 
Sbjct: 117 QKLIYAAKKDGKEQL--ALCMETIACTGIRISELKYFTVE--RIKRGKIEIYNKGKY-RK 171

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PL 258
           + L   +R+ +L Y               +F    GK  +     R ++ L++  G+   
Sbjct: 172 IFLPKLLRENLLNYCKEHGIKTGW-----VFITKTGKLKDRSNLWREMKNLQKKAGVAET 226

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               H LRH FA     +  DL  +  +LGH  ++ T+IYT          +    +Q
Sbjct: 227 KIFPHNLRHLFARSYYEDTKDLAGLADLLGHSSVNVTRIYTATTESVFQKRIDRFIEQ 284


>gi|301066065|ref|YP_003788088.1| site-specific recombinase, prophage lsa1 integrase [Lactobacillus
           casei str. Zhang]
 gi|300438472|gb|ADK18238.1| Site-specific recombinase, prophage lsa1 integrase [Lactobacillus
           casei str. Zhang]
          Length = 382

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 101/279 (36%), Gaps = 32/279 (11%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
              +T+  +    I++ +S+ R         K     +K  L +  K +   ++    + 
Sbjct: 104 FGSKTLTAIKTGSIQSAVSQWRETTTKA--YKERFIYLKKILSFAVKMQYIEKNPADGVE 161

Query: 118 NLKKSN--SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
             +       P   + KQ    +  +  +   E          +  L+   G+R  E  +
Sbjct: 162 LPRGVRSGKSPVYWDNKQVARFLTCIDPNNDPEK-------YTMFLLMVSTGIRREELCA 214

Query: 176 LTPQNIMDDQSTLRIQG----------------KGDKIRIVPLLPSVRKAILEYYDL--C 217
           L   ++    STL I                      +R +PL P V   + ++  L   
Sbjct: 215 LNVSDVNFKTSTLSINKAYATGLNGKESIKGTKSTAGMRTIPLTPKVTIQLKKWIALLDA 274

Query: 218 PFDLNLNIQLPLFRGIRGK--PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
              +++    PLF   +     L      ++++ +     L    T H LR SF T+++ 
Sbjct: 275 SKIISIRDDRPLFPSPQHFEKRLGINRPNKWLKDIIEANHLTPRITLHGLRKSFVTNMIR 334

Query: 276 NGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           +G D+ ++Q + GH     T +IY  +N  +  + + ++
Sbjct: 335 SGVDVSTVQRLAGHSTPDVTLRIYAGMNQSDAREGIDKL 373


>gi|256060768|ref|ZP_05450930.1| Phage integrase [Brucella neotomae 5K33]
 gi|261324757|ref|ZP_05963954.1| phage integrase [Brucella neotomae 5K33]
 gi|261300737|gb|EEY04234.1| phage integrase [Brucella neotomae 5K33]
          Length = 308

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/276 (20%), Positives = 105/276 (38%), Gaps = 31/276 (11%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97
           S++ + R FL  +    +E +            + + I   R +   + ++ R ++ +  
Sbjct: 57  SHKYNVRSFLGEI----DEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSK 112

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
            L+  K  K+    N+      K+     R L +++   L   +                
Sbjct: 113 LLR--KAHKMGDIFNLPEFIRQKERVGRIRFLEQEEEKRLFAAIKSRCEDS--------Y 162

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            +   L   G R+ EA+ LT  +I + + T  +  K ++ R VPL    RKA        
Sbjct: 163 RLSVFLVDTGCRLGEAIGLTWNDIQEQRVTFWV-TKSNRSRTVPLTRRARKA-------- 213

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLS 275
           P      ++ P         LN   F++   + +  +GL        H LRH+ A+ L+ 
Sbjct: 214 PHIPRERLKGPF------SMLNQVRFRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVR 267

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            G D+R +Q  LGH  L  T  Y ++ + +    + 
Sbjct: 268 GGIDIRRVQMWLGHQTLQMTMRYAHLATHDLDSCVK 303


>gi|257891586|ref|ZP_05671239.1| integrase [Enterococcus faecium 1,231,410]
 gi|261206697|ref|ZP_05921392.1| predicted protein [Enterococcus faecium TC 6]
 gi|289567110|ref|ZP_06447504.1| predicted protein [Enterococcus faecium D344SRF]
 gi|294615943|ref|ZP_06695773.1| integrase [Enterococcus faecium E1636]
 gi|314940596|ref|ZP_07847729.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|314943369|ref|ZP_07850141.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|314949883|ref|ZP_07853186.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
 gi|314953769|ref|ZP_07856636.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
 gi|314993029|ref|ZP_07858422.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|314998266|ref|ZP_07863135.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|257827946|gb|EEV54572.1| integrase [Enterococcus faecium 1,231,410]
 gi|260079055|gb|EEW66751.1| predicted protein [Enterococcus faecium TC 6]
 gi|289161094|gb|EFD09000.1| predicted protein [Enterococcus faecium D344SRF]
 gi|291591192|gb|EFF22871.1| integrase [Enterococcus faecium E1636]
 gi|313587746|gb|EFR66591.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|313592459|gb|EFR71304.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|313594245|gb|EFR73090.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
 gi|313597927|gb|EFR76772.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|313640228|gb|EFS04809.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|313643767|gb|EFS08347.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
          Length = 373

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/302 (18%), Positives = 123/302 (40%), Gaps = 38/302 (12%)

Query: 35  TLQ--SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           T++  SY   T+ +L  ++ Y ++ + ++ +      ++  +    +            +
Sbjct: 79  TVKESSYRT-TQVYLSLISKYIKDDVLVKNVNSNLIQDMLDYYYFEKNLSYN------YV 131

Query: 93  SGIKSF----LKYLKKRKITTESNILNM---RNLKKSNSLPR----ALNEKQALTLVDNV 141
             +K+F     K+  +R     + +  +   R  K +  + +     L++++        
Sbjct: 132 IHLKTFTGMIFKFANRRYGLKYNPVNGVSLARKPKTNEEIKKEKDGYLSKEEV------Q 185

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----------LRIQ 191
           ++ +  ++    +R S I   L+  GLR  E +SLT  +   ++ T          ++  
Sbjct: 186 MIASKQKSSHQQSRYSLITKFLFLTGLRYGELISLTESDYDGNKITVSGTYDYELKIKTT 245

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            K         L S  K I++        +  N    +F    G P++   + + +R + 
Sbjct: 246 TKNTGSYRTIELSSNAKEIIDQLIEENKLIKNNKDKYIFISKNGNPISIQAYNQSLRAVS 305

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           + L +    ++H LRHS  + L   G  L++I   +GH    TT +IYT+  +KN  + +
Sbjct: 306 KELNIDKKVSSHMLRHSHISLLTELGIPLKAIMDRVGHEDSKTTLKIYTH-TTKNMQNQL 364

Query: 311 ME 312
           +E
Sbjct: 365 VE 366


>gi|134283292|ref|ZP_01769993.1| phage integrase [Burkholderia pseudomallei 305]
 gi|217424779|ref|ZP_03456276.1| phage integrase family protein [Burkholderia pseudomallei 576]
 gi|134245487|gb|EBA45580.1| phage integrase [Burkholderia pseudomallei 305]
 gi|217392235|gb|EEC32260.1| phage integrase family protein [Burkholderia pseudomallei 576]
          Length = 348

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/305 (16%), Positives = 116/305 (38%), Gaps = 22/305 (7%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
              + +++ + I +  +  T +S    ++    F   Y        ++  +S   +  + 
Sbjct: 63  AALKRYMEEVSITKKAT--TQRSERFTSQHLAAFFGKY--------SMAAVSAELVAKYR 112

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT--TESNILNMRNLKKSNSLPRALNEKQ 133
            +R      + +++  L+ +    +   +      T + + N+R         R L  ++
Sbjct: 113 DERLAAGKSNNTVRIELAMLGHLFRVAIQEWGIGLTFNPVANIRKPSPGAGRDRRLTPEE 172

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-G 192
              L      H++    W       I+ L    G+R SE   L    +  ++  + ++  
Sbjct: 173 QQRLFAAADAHSNPILGW-------IVRLAVETGMRSSEITGLHRSQVDLNRRVVTLKDT 225

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K   +R+VPL     + +    D     +++++      G  GK   P VFQ+    + +
Sbjct: 226 KNGSVRLVPLTRVAVEILRSALDNPIRPIDVDLVFFGEPGRDGKR-KPYVFQKLWASIVQ 284

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL      H LRH   + L+  G   + + SI GH  +   + YT++ +++  + +  
Sbjct: 285 TAGLA-DLHFHDLRHEAVSRLVEAGLSDQEVASISGHKSMQMLKRYTHLRAEDLVEKLDR 343

Query: 313 IYDQT 317
           +  Q 
Sbjct: 344 LKKQA 348


>gi|262382327|ref|ZP_06075464.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262295205|gb|EEY83136.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 310

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/308 (16%), Positives = 109/308 (35%), Gaps = 40/308 (12%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +  ++L +  + ++  L  +   S    +SY+     FL F          +    ++  
Sbjct: 1   MKQYDLAEGMRMYIARLREQGRYSSA--KSYQDALNSFLRFCGQ------EVIPYTRIDR 52

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK------ITTESNILNMRNLKKS 122
             +  +    R ++    ++   +  I+       +           +   + +++ K+ 
Sbjct: 53  EMLLRYQDYLRDRECSWNTVSTYMRRIRRVYGLAMENGEAPFSRYLFKGIFMGVKS-KQK 111

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            +LP      ++L L    L+    +   +     A+  +   CG+   +   L   +I 
Sbjct: 112 KALPT-----ESLRL----LMTAPLDDSGLRKTQRALCLMFLFCGMAFVDFAHLKKSDI- 161

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
                LR   +     ++  +  V K +L           L     LF  + G       
Sbjct: 162 -RNGVLRYNRQKTGTPMLVEIQPVAKELLAALMTGT----LRDSPYLFTFLSGTKTGEEA 216

Query: 243 FQRY----------IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           F+ Y          +++L    G+    T++++RHSFAT L   G  +  I  +LGH  +
Sbjct: 217 FREYTSALADFNSSLKELANACGVTEMVTSYSIRHSFATTLKEQGVPIEMISELLGHQSI 276

Query: 293 STTQIYTN 300
            TTQIY  
Sbjct: 277 KTTQIYLK 284


>gi|218129570|ref|ZP_03458374.1| hypothetical protein BACEGG_01147 [Bacteroides eggerthii DSM 20697]
 gi|217988300|gb|EEC54623.1| hypothetical protein BACEGG_01147 [Bacteroides eggerthii DSM 20697]
          Length = 416

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 61/309 (19%), Positives = 120/309 (38%), Gaps = 26/309 (8%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYEC---DTRQFLIFLAFYTEEKITIQTIR 64
            ++  +LL+  +  L+ L + R     +  +Y       +    +L    +E I    I 
Sbjct: 98  AVIPAKLLQMGERELERLLV-RSKEINSTSTYRNSKYYQKYLKDYLTSLGKEDIEFSDIT 156

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           +   +  +AF+  +R +  G   + + L  +   +      +I   + + +M   KK   
Sbjct: 157 EEFGSSYKAFL--KRYKNFGPSQMNKCLCWLSKLVYLAVDYEILRANPLEDMEYEKKPAP 214

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--- 181
             R ++  +   +++  +L    E         A L+ ++  GL   + + L P +I   
Sbjct: 215 KHRHISRAELKAILETPMLDPLQELGR-----RAFLFSIF-TGLAYVDIMLLHPHHIGTT 268

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
            D +  +RI  K   +     L  + + IL+ Y+        +   P+F        +  
Sbjct: 269 ADGRRYIRINRKKTNVEAFIPLHPIAEQILDLYNT------TDDTKPVFPLP-----SRD 317

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                I +L   +G   + + H  RHSF T L+S G  + SI  ++GH  + TTQ Y  +
Sbjct: 318 EMWFEIHELGVAIGRKENLSYHQSRHSFGTFLISEGIPIESIARMMGHSGIKTTQRYAEI 377

Query: 302 NSKNGGDWM 310
             K     M
Sbjct: 378 TDKKISKDM 386


>gi|206971545|ref|ZP_03232495.1| DNA integration/recombination/invertion protein [Bacillus cereus
           AH1134]
 gi|206733530|gb|EDZ50702.1| DNA integration/recombination/invertion protein [Bacillus cereus
           AH1134]
          Length = 369

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/315 (18%), Positives = 112/315 (35%), Gaps = 39/315 (12%)

Query: 18  RQNWLQNLEIERGLS--KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            +++L +    + +S  K T   Y+        F+  +    I +  + +L+   I+   
Sbjct: 65  LKDYLNHWLEIKSMSIQKSTFAGYK-------AFINQHVIPSIGMVALHKLNVMHIQKCY 117

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                + I + S+      +KS L    K+ I + +        KK  +  +   E +  
Sbjct: 118 KTAIDKGITNNSILLMHRILKSALNLAIKQNILSRNPAAFAEIPKKEKTPIQTWTEDEVK 177

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
                 LLH+      I         L    G+R+ E L L  Q++  ++ T+ I     
Sbjct: 178 KF----LLHSQESRYHIGY------LLAITTGMRMGEVLGLRWQDVDFEKHTVTINQTSG 227

Query: 196 KI-------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-----FRGIRGKP 237
                          R +P+     +++  +  L   +        L          GK 
Sbjct: 228 HDNKIKKTAKTNSSKRTIPVPKETIESLKRHKILINKEKLRFGSAYLDQDLINCNEFGKI 287

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
           +    F++   ++   +G+      H LRH+ AT LL  G + + I   LGH  +S T  
Sbjct: 288 IKRAHFRKSFIRMTHKVGI-KEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLS 346

Query: 297 IYTNVNSKNGGDWMM 311
           +Y++V      + + 
Sbjct: 347 VYSHVLPNMQEEAVK 361


>gi|303236540|ref|ZP_07323125.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483288|gb|EFL46298.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 418

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/304 (18%), Positives = 110/304 (36%), Gaps = 25/304 (8%)

Query: 16  KERQNWLQNL-EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           + +QN+++   ++     + +  S + +  +  + L  +  + +    I      + + F
Sbjct: 125 RLQQNFIKYFDKVADKRHRNSSLSIQTNWERVHVLLKMFAGDTLLFSQIDNRLAEDFKFF 184

Query: 75  ISKR-----RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +        +   I   +     S  K+ LK        T      ++ +++  S    L
Sbjct: 185 LLSAPCGGSKKGTISRNTASTYFSIFKAALKQAFVDGYLTIDLSAKIKGIQEQESRREYL 244

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              +      N L +T  E   +  + +A+   L   GLR  +   L    I  + +  +
Sbjct: 245 TLDEL-----NKLANTPCERDVL--KRAALFSAL--TGLRHCDIQKLKWDEIAIEGNQAK 295

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           +     K + V  +P   +A     +       +   LP          NP    R +R 
Sbjct: 296 LLFTQKKTKGVEYMPISEQAFKLCGEPRQPKQLVFEGLP----------NPSWISRPLRA 345

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+    + H  RH+FAT  L+NG D+ ++  +LGH  + TTQ+Y  V  +     
Sbjct: 346 WIEKAGIQKHLSFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKVVDEKKNKA 405

Query: 310 MMEI 313
              I
Sbjct: 406 ANAI 409


>gi|170742030|ref|YP_001770685.1| integrase family protein [Methylobacterium sp. 4-46]
 gi|168196304|gb|ACA18251.1| integrase family protein [Methylobacterium sp. 4-46]
          Length = 380

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/346 (16%), Positives = 125/346 (36%), Gaps = 52/346 (15%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
           G ++P+  S  + +    WL++   E GL   T+  Y+    + +  L       I    
Sbjct: 52  GVHIPDSQSMTVGQAADAWLKH-AEEGGLEWSTVLHYQQHVNEHIRPL-------IGSLR 103

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           + Q++   + +F  + R +      ++R++  +    ++ K R +  ++ + +++  +  
Sbjct: 104 LTQVTTPRVYSFAEELRAKGRSPEMVRRAVQSLGRIFRFAKGRGLAGQNPVADVKLKRSK 163

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
               R     +  T  +   +  + + +W     +A+        LR SE   L   ++ 
Sbjct: 164 RDQARV----EIPTREELRAILGAAQGRWRPLIVTAMF-----TALRASELRGLRWSDVD 214

Query: 183 DDQSTLRIQ------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
             +  L ++                  R VPL P V   + E+  L      L++  P  
Sbjct: 215 LKRRVLTVRQRADAWKRIGPPKSEAGTRDVPLAPMVVNTLREWR-LACPKGELDLVFPSG 273

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGL-----------------PLSTTAHTLRHSFATHL 273
            G       P +  R     +   G+                       H LRH+ A+  
Sbjct: 274 AGQVEHH--PNIIARGWEPTQIAAGVVEMVDGKDKAGNPAKAAKGRYNFHALRHAAASMF 331

Query: 274 LSNGGDLRSIQSILGHFRLSTT-QIYTNV--NSKNGGDWMMEIYDQ 316
           + +G   + +Q+I+GH  +  T   Y ++  + +   + M  I ++
Sbjct: 332 IESGMTPKRVQAIMGHSSIIVTYDTYGHLFSDDEADQNAMRTIEER 377


>gi|119471652|ref|ZP_01614037.1| mobilizable transposon, int protein [Alteromonadales bacterium
           TW-7]
 gi|119445431|gb|EAW26718.1| mobilizable transposon, int protein [Alteromonadales bacterium
           TW-7]
          Length = 377

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 103/303 (33%), Gaps = 31/303 (10%)

Query: 16  KERQNWLQNLEIERGLSKLT--LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           K+++++   ++      + T    +        +    +     ++            R 
Sbjct: 90  KQQESFYSYMQQIINDKEHTDSPSNVSLWESSLMHLKRYCEGNPLSFADFDADILLGFRT 149

Query: 74  FISKRRTQK----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++ K    K    +   +     + +++ L       I   + +  ++ +K   +    L
Sbjct: 150 YLIKHARTKSDKLLSSNTTSCYFNKVRAALNKAFHEGIIRRNPVNEVKTIKIEQNPRNYL 209

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQST 187
            E++   L            K     +      L+GC  G+R S+   LT + +      
Sbjct: 210 EEEEVTALY-----------KTECRYDVLKRAFLFGCLTGMRWSDIQKLTWEKLTMIDPR 258

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
              Q    K      LPS    +L                 +F+G++            +
Sbjct: 259 ATFQHIKTKQLQYLHLPSDATMLL--------GTPGEDHERVFKGLKYSSYT----NVAL 306

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            Q     G+    T H  RH+FA  +L+N  D+ ++  +LGH  L TTQIYT++  +   
Sbjct: 307 TQWMLRAGITKHITFHCARHTFAVRMLTNDVDIYTVSKLLGHSELKTTQIYTDIIDRKRK 366

Query: 308 DWM 310
           + M
Sbjct: 367 EAM 369


>gi|60280069|gb|AAX16408.1| integrase [uncultured murine large bowel bacterium BAC 54B]
          Length = 419

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 113/285 (39%), Gaps = 15/285 (5%)

Query: 31  LSKLTLQSYECDTRQFLIFLAF--YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
            SK    +Y+    +F+ FL      +   +   +  ++   + +F    +    G+ + 
Sbjct: 136 YSKPVRTTYKTSYNRFMRFLEATPRFQRYTSFLRMELITPEMVTSFTDYLKKVAKGEGAH 195

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           K      ++ + +  +  +  ++    +   +  N+L +     + LT+ +   L  +H 
Sbjct: 196 KSYYM-FRTVILHAIEEGLMKKNPCKGIVIHRDVNTLKK-----EILTMDEIKRLAATHY 249

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
                A   A L+  +  G+R  + +SLT  N+      LR   +  + R      ++  
Sbjct: 250 EGEDTALQRAFLFCCF-TGIRWCDTVSLTYANVDFSAKILRFNQQKTEGRSAHSGVTIPL 308

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           +      +     + + ++      R   +        +++  +  G+  + T H  RHS
Sbjct: 309 SPTLLKLIGNPIQHTSEKIFNITCYRTTAITR------LQKWVKAAGINKTITWHCARHS 362

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           FA ++L  G +++++ S++GH  +  T+ Y +V  +   D +  +
Sbjct: 363 FAVNVLGAGANIKTVASLMGHSSIKMTEKYLHVIDQQKQDAINSL 407


>gi|119715338|ref|YP_922303.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119535999|gb|ABL80616.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 383

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 96/262 (36%), Gaps = 39/262 (14%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           + ++Q+  +++  +I +     +   ++K     ++S  +   K ++        +R  +
Sbjct: 94  KPMKQVRRSDVETWIKQMNAAGLAPGTIKTRYVNVRSVFRAAVKDRVIGSDPTDGVRLPR 153

Query: 121 KSN-----SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
                   S+P     +Q + + D                    + L    GLR+ EA  
Sbjct: 154 GRRADVGMSIPAPEEVRQLMAVADERFQP--------------FIALCAFAGLRLGEAAG 199

Query: 176 LTPQNIMDDQSTLRIQG---------------KGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           +   ++   + +L++                 K    R+V L  S+   + E+       
Sbjct: 200 VQLGDVDFLRRSLKVSRQVQRVNGGAIDVRAPKYGSERVVYLADSLVNVLAEHVGAHGTT 259

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
                   LF G    P +      + R+  R  GL      H LRH +A+ L++ G D+
Sbjct: 260 GKAR---WLFAGEGDDPPHQNTIGYWWRKTLRDAGLS-GIKLHDLRHFYASGLIAAGCDV 315

Query: 281 RSIQSILGHFRLSTT-QIYTNV 301
            ++Q  LGH + +TT   Y ++
Sbjct: 316 VTVQRSLGHAKATTTLNTYAHL 337


>gi|257895547|ref|ZP_05675200.1| site-specific recombinase [Enterococcus faecium Com12]
 gi|257832112|gb|EEV58533.1| site-specific recombinase [Enterococcus faecium Com12]
          Length = 407

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/296 (17%), Positives = 103/296 (34%), Gaps = 48/296 (16%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRT--------QKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           I    + + +  + + FI++  T        + +   + K   + + +  K   + +   
Sbjct: 107 IGKYKLDKYTRADHQRFINQLLTKKGLGRTKEGLSVTTAKSINATLSNAFKKAIQLRYIK 166

Query: 110 ESNILNMRNLKKS--NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
            +    +   +        +     Q+   ++        E  +I         +++  G
Sbjct: 167 NNPTSFVEFPRNPSDKKKVKYYTFDQSELFLEF----AKKEKSFIWYP---FFLIIFDQG 219

Query: 168 LRISEALSLTPQNIMDDQSTLRIQ---------------------GKGDKIRIVPLLPSV 206
           LR SEAL L   +I   Q+TL I                            R +P+   V
Sbjct: 220 LRKSEALGLQWADIDFSQNTLNINRERLGAAEKGPNKGLIITDDTKTPSGTRSLPMTKRV 279

Query: 207 RKAILEYYDLCPFDLNL-----NIQLPLFRG----IRGKPLNPGVFQRYIRQLRRYLGLP 257
           +KA+L   +    +        + +  LF       +G P+          ++ +   LP
Sbjct: 280 KKALLTLRNQVIKEFGFLPETDDHEAFLFINTYRKNKGIPIRDRTVNGASHRIEKRANLP 339

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              T H  RH+FA      G  L  I+  LGH  +STTQ+Y +++ +     M ++
Sbjct: 340 -HITVHDGRHTFAARTRQAGIPLEDIKDFLGHKDVSTTQVYAHISPEVKKRSMNQL 394


>gi|254883690|ref|ZP_05256400.1| transposase [Bacteroides sp. 4_3_47FAA]
 gi|254836483|gb|EET16792.1| transposase [Bacteroides sp. 4_3_47FAA]
          Length = 287

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/271 (21%), Positives = 108/271 (39%), Gaps = 23/271 (8%)

Query: 53  YTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111
                 T+ + RQL+   IR +       +++   +++  LS  K   +   K   + + 
Sbjct: 27  RNSRSQTLSSDRQLNEQFIRDYQDFCLERKRLAMETVRHYLSIQKKICRIAYKEGHSEKY 86

Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
           +  + +  K+    P+ L+ +    L D  +     E +        +       G   +
Sbjct: 87  HFCHFKLPKQKEGTPKVLSRENFEKLRDLEI----PEKRRSHVITQDLFLFACYTGTAYA 142

Query: 172 EALSLTPQN-IMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           +A+S+T +N   DD+ +L +   + K D +  V LLP     I +Y          + + 
Sbjct: 143 DAVSITQENLFRDDEGSLWLKYRRKKTDYLGRVKLLPEALMLIKKY--------REDTRA 194

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSI 286
            LF      P +    +  ++ LR   GL      H  RHSFA+ + L  G  + +I  +
Sbjct: 195 TLFP-----PQDYHTLRANMKSLRLMAGLSQDLVYHMGRHSFASLVTLEEGVPIETISKM 249

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           LG+  + TTQIY  V  K   + M    + T
Sbjct: 250 LGYSNIKTTQIYARVTPKRLFEDMDRFVEAT 280


>gi|227496487|ref|ZP_03926771.1| phage integrase family protein [Actinomyces urogenitalis DSM 15434]
 gi|226834014|gb|EEH66397.1| phage integrase family protein [Actinomyces urogenitalis DSM 15434]
          Length = 437

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 65/328 (19%), Positives = 117/328 (35%), Gaps = 49/328 (14%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M G ++P      L       L  L     ++  T++ Y+                 +  
Sbjct: 88  MSGTSVP-----TLNTAIDQHLDELRA--SVTAGTIRRYQ-------QIANTRLRPTLGD 133

Query: 61  QTIRQLSYTEIRAFISKRRTQKI----------GDRSLKRSLSGIKSFLKYLKKRKITTE 110
                ++   +  +++K+R   +            ++L+ + + + S L++  +      
Sbjct: 134 LPCDLITRPVVTQWLAKQRETPVQRGRTKGSTPSYKTLRGAQALLSSVLEHQVRAGTIPT 193

Query: 111 SNILNMRNLKKSNSLPRA-LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
           +    ++  +      +  L   Q  TL+D V        K        ++  LYG GLR
Sbjct: 194 NVARGLKLPRDGIVRDKVFLTPTQFATLLDCV----PDAHKP-------LVSTLYGLGLR 242

Query: 170 ISEALSLTPQNIMDD--QSTLRIQG--KGDKIRIVPLLPSVRKAILE-------YYDLCP 218
             EA +LTP ++  D  Q  +R+    K  K       P  R++I            L  
Sbjct: 243 FGEATALTPADLDLDAAQPVVRVTKAWKEGKKGSYLGSPKTRRSIRTVTVPPSLIPILRE 302

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQ-RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
                     LF    G+ +  G F  R  +      GL  +   H LRHS A+ L++ G
Sbjct: 303 QARKKKPGALLFPNAYGEQITSGAFHARVWQPAVAASGLDPAPRVHDLRHSHASALIAAG 362

Query: 278 GDLRSIQSILGHFRLSTT-QIYTNVNSK 304
             L  IQ  LGH  + TT  +Y ++  +
Sbjct: 363 IPLPVIQRRLGHESIQTTVDVYGHLAPE 390


>gi|333011636|gb|EGK31049.1| integron integrase family protein [Shigella flexneri K-227]
 gi|333011750|gb|EGK31159.1| integron integrase family protein [Shigella flexneri K-227]
          Length = 215

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 95/234 (40%), Gaps = 28/234 (11%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
             T+ ++ GKG K R + L  S+  ++ E               P  R    +P
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLRTRPRPQRRCASRRP 215


>gi|328882938|emb|CCA56177.1| Integrase [Streptomyces venezuelae ATCC 10712]
          Length = 428

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 65/309 (21%), Positives = 112/309 (36%), Gaps = 36/309 (11%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI--GDRSLKRSLS--- 93
           Y  D  + L    F T  +  ++++   S   IR ++      K+  G   L R +S   
Sbjct: 107 YRKDCLRELEMYIFPTFGECDVRSVGHFSSDTIRGWVRVLEQTKVRKGRGPLNRMMSPKT 166

Query: 94  --GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-----ALNEKQALTLVDNVLLHTS 146
              +   L  +    +  E   L  RN  +  +LPR        E + +  +    +   
Sbjct: 167 IRNLHGLLSSILNEAVRAE-PPLRARNPCERTNLPRRDDGGTGPEDEDIEFLTPQEVAAI 225

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQ---NIMDDQSTLRIQGKGDKIRIVPLL 203
            E   I  ++  ++ + YG GLR SE  +L P    +    +  L++     K       
Sbjct: 226 RERLTI-RQDQLMVEVKYGTGLRYSELTALAPYCLLDSDPARVRLQVHRAWKKDGEGGYY 284

Query: 204 ------------PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
                         V K+++E  +       L+     F G +G+ L+   F    ++  
Sbjct: 285 VGMPKSKRSRRTIRVSKSVIEALNELRRTEELDDDSLFFTGDQGQRLHYSTFYDRWQRAI 344

Query: 252 RYLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
           R         +    T H LRHS A  L+S G     +Q  LGH  + TT  +Y ++  +
Sbjct: 345 RKAKEDGVLPIYKHPTPHDLRHSHAAALISAGHSPTYVQRRLGHESIKTTSDLYGHLLPE 404

Query: 305 NGGDWMMEI 313
              D M  I
Sbjct: 405 TDDDAMETI 413


>gi|325297480|ref|YP_004257397.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317033|gb|ADY34924.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 416

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/282 (20%), Positives = 109/282 (38%), Gaps = 22/282 (7%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  T ++ +   +    +L    +E I    I +   +  +AF+  +R +    + + + 
Sbjct: 124 STSTCRNSKYYQKYLKDYLTSTGKEDIDFTDITEEFGSSYKAFM--KRNKNFSAQQINKC 181

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L  +   +      +I   + + +M   KK     R ++  +   +++  +L    E   
Sbjct: 182 LCWLSKLVYLAVDYEILRANPLEDMEYEKKPAPKHRHISRAELKAILETPMLDPLQELGR 241

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRK 208
                 A L+  +  GL   + + L P +I    D +  +RI  K   +     L  + +
Sbjct: 242 -----RAFLFSTF-TGLAYVDIMLLHPHHIGTTADGRRYIRINRKKTNVEAFIPLHPIAE 295

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            IL+ Y+        +   P+F        +       I +L   +G   + + H  RHS
Sbjct: 296 QILDLYNT------TDDTKPVFPLP-----SRDEMWFEIHELGVAIGRKENLSYHQSRHS 344

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           F T L+S G  + SI  ++GH  + TTQ Y  V  K     M
Sbjct: 345 FGTFLISEGIPIESIAKMMGHSGIRTTQRYAEVTDKKISKDM 386


>gi|291526795|emb|CBK92381.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 353

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/345 (16%), Positives = 118/345 (34%), Gaps = 64/345 (18%)

Query: 20  NWL--QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           N+L  + +  +  L   T  +Y      F+        +    + I+ + Y+++  F + 
Sbjct: 15  NFLFDRYISTKTELRSTTKANYLYTWDHFIR-------DTFGKKKIKDVKYSDVLFFYTD 67

Query: 78  RRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKK----SNSLPRALNE 131
             T + +   +L+   + ++   +   +  I   + +      +KK    +    RAL  
Sbjct: 68  LITNKGLQVNTLESINTVLRPTFELAVRDDIIRRNPVDGAYAEVKKRNGGARKSRRALTV 127

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           +Q    +D V  +                  L G G RI EA+ +   ++   + T+ I 
Sbjct: 128 EQQREFIDYVAKN------PFFFHWYPFFVFLLGTGCRIGEAIGIRWDDVDMKKRTININ 181

Query: 192 G----------------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLN-----LN 224
                                      IR +P++  V + +   Y     +         
Sbjct: 182 HSLTYYTRYDNSFKCEFRVSEPKTEAGIRTIPMMGPVYEVLKSEYQRQQEEGFCVAEVDG 241

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL---------------STTAHTLRHSF 269
           +   +F    G P NP    R I+++                         + H  RH+F
Sbjct: 242 MTNFIFTNRFGNPHNPQAVNRAIKRIVDTHNAEEEVEAKKKKREPIMLPRFSCHIFRHTF 301

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
           A+    N  +++ IQ ++GH  +STT  IY   N +   + + ++
Sbjct: 302 ASRFCENETNVKVIQEVMGHADVSTTMNIYAEANPEVTREALEKL 346


>gi|302878141|ref|YP_003846705.1| integrase family protein [Gallionella capsiferriformans ES-2]
 gi|302580930|gb|ADL54941.1| integrase family protein [Gallionella capsiferriformans ES-2]
          Length = 664

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 69/366 (18%), Positives = 141/366 (38%), Gaps = 72/366 (19%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           + +P I +    +    WL      +  +  T ++Y+ +  + L++     ++ ++  T+
Sbjct: 289 HGVPRIAAANDYQAVFAWLAT----KSGNPNTQRAYQKEAEKMLLWAIIERDKALSDLTV 344

Query: 64  RQ-LSYTEIRA------------------FISKRRTQK-----------IGDRSLKRSLS 93
               SY +  +                  +IS ++ ++           +   S++ +++
Sbjct: 345 EDCASYRDWLSMIGRTEPDNWPFRITQSEWISAKKRERHDPAWKPFDGSLSPGSVRYAIT 404

Query: 94  GIKSFLKYLKKRKITTESNILNMRN---LKKSNSLP-----RALNEKQALTLVDNVLLHT 145
            + +  ++L + +  + +    +        S S P     RA +  Q   L+   L   
Sbjct: 405 VVGNLFEWLVRVQYCSFNPWSAVSKSLVAADSRSNPDVEFMRAFSAGQWNYLM-ACLRQL 463

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEAL--------SLTPQNIMDDQSTLRIQGKGDKI 197
              +    AR   +L   Y  GLRISE +        ++   N +  +  L++ GKG K 
Sbjct: 464 PATS--CSARLRFVLPFAYATGLRISELVDAKVSRMYTMPLSNEIGVRWMLKVCGKGGKW 521

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR---------GIRGKPLNPGVFQRYIR 248
           R VPL   V +A+  Y++     L++    P             +    L+    + +  
Sbjct: 522 RAVPLSSEVIQALQTYFEYRGLSLDITSNPPDTPLVSSEIGTGSVTTSALS-KSLRSFFG 580

Query: 249 QLRR---------YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           ++ +                 TAH LRH+  +HL  +G  L  +Q +LGH  L TT IYT
Sbjct: 581 EIAQSLMMDGKHIEAKAFDHATAHWLRHTCGSHLALSGVPLNIVQRLLGHTSLQTTSIYT 640

Query: 300 NVNSKN 305
           + + +N
Sbjct: 641 DTSDEN 646


>gi|223369814|gb|ACM88776.1| integrase [uncultured bacterium]
          Length = 163

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 54/110 (49%)

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G GD      +     +A  E+     F        P    +R   +      R +++  
Sbjct: 53  GCGDVELPDAIARKYPRAPYEWGWKFVFPSYSRSVDPRTGVLRRHHVYENYVIRGVKEAA 112

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R  G+    + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 113 RGAGITKHVSCHTLRHSFATHLLENGYDIRTVQELLGHSDVSTTMIYTHV 162


>gi|314950374|ref|ZP_07853650.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
 gi|313643325|gb|EFS07905.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
          Length = 397

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/302 (18%), Positives = 110/302 (36%), Gaps = 34/302 (11%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
           +   +Q    +    E+K+  ++I  +  ++ + +  + + +     ++      +K+  
Sbjct: 100 KSTMKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMKDKGFSYNTINNHKRSLKASF 159

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
               +     ++      + K +  L     EK ALT      L +  +T  +  ++   
Sbjct: 160 YIAIQDDCVRKNPF----DFKLNEVLENDTKEKVALTEEQEQALLSFIKTDNVYHKHYDD 215

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLL 203
           + +L   GLRISE   LT  +I      + I                      IR VPL 
Sbjct: 216 VLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGYYIETPKTKSGIRQVPLS 275

Query: 204 PSVRKA---ILEYYDLCPFDLNLNIQLPLFRGIRGKP--------LNPGVFQRYIRQLRR 252
               +A   +++ +      +       LF   +GKP        L   + ++Y +  + 
Sbjct: 276 RETIQAFQRVMKKHPKAEPFVIDGRSNFLFVNHKGKPKVAIDYNALFVRMIKKYNKHHKD 335

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMM 311
                   T HTLRH+F T L S   + + +Q I+GH  +S T   Y + +       + 
Sbjct: 336 --NPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQ 393

Query: 312 EI 313
            +
Sbjct: 394 RL 395


>gi|239943966|ref|ZP_04695903.1| traSA:integrase fusion protein [Streptomyces roseosporus NRRL
           15998]
 gi|239990422|ref|ZP_04711086.1| traSA:integrase fusion protein [Streptomyces roseosporus NRRL
           11379]
 gi|291447431|ref|ZP_06586821.1| traSA:integrase fusion protein [Streptomyces roseosporus NRRL
           15998]
 gi|291350378|gb|EFE77282.1| traSA:integrase fusion protein [Streptomyces roseosporus NRRL
           15998]
          Length = 372

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 103/295 (34%), Gaps = 39/295 (13%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKY 101
             Q L    +   EK  +  I+     +++++++   T   +   + +   + + +  + 
Sbjct: 81  VAQHLRCYVYPAWEKRALGAIK---PGDVQSWVTSLTTTHGLAASTSRTVFNTVNAVFRA 137

Query: 102 LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
             + ++   +     +           L  +Q  TL +            I AR   ++ 
Sbjct: 138 AVRDRMIPHNPCAEAKLPSVPRKKIVPLAVEQVRTLSEE-----------IPARYKGLVL 186

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ----------------GKGDKIRIVPLLPS 205
           L    GLR  E   L  +++    +T+ ++                      R VPL   
Sbjct: 187 LGAATGLRPGELFGLQLRHVDLLHATVSVEQQIQQTAKHGVYVCPPKTARSHRTVPLPRM 246

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHT 264
              A+  +    P D     +  +F   +G P+          R      G+   T  H 
Sbjct: 247 AVDAMKAHLRDFPAD---GPEGWIFTAPQGGPVVYTHFMDGSWRPACAKAGIAKGTGPHA 303

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV---NSKNGGDWMMEIYD 315
           LRH +A+ L+ +G  ++++   LGH   + T  IYT++   + +     + + Y 
Sbjct: 304 LRHHYASLLIKHGESVKTVSERLGHTNAAMTLNIYTHLWPDSEERTRAAVDKAYA 358


>gi|150004395|ref|YP_001299139.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
           8482]
 gi|149932819|gb|ABR39517.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
           8482]
          Length = 386

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 93/251 (37%), Gaps = 12/251 (4%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKK 121
              L+Y  +  F            ++ + +  +KSF+     +     +N    R  +K 
Sbjct: 143 FEDLTYNFVTDFEKNLYESGYQTNTVAKHMKHLKSFVNAAINKGYIDPNNYAFRRYKIKM 202

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
                  L  ++   L +  L   +     ++    A L+  Y  GLR S+ ++L  +NI
Sbjct: 203 KEGKHVFLLPEEMKKLEEVSL---TGRNSCLEHTLDAFLFCCY-TGLRYSDFVNLNEKNI 258

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
           +     L +     K      LP     +L              +   F  I+    N  
Sbjct: 259 VKMDGKLWLIFDSVKTGTEVKLPL---NLLFEGKALTLLQKYQGKWSSFFSIK----NNS 311

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              + + ++ +   +    + H+ RH+ AT L+  G ++ ++Q +LGH  L+TTQIY  V
Sbjct: 312 SVNKELIRIGKLAKISKHFSFHSARHTNATLLIYKGANITTVQKLLGHKNLATTQIYGEV 371

Query: 302 NSKNGGDWMME 312
                   + +
Sbjct: 372 MGSTIIRDLKK 382


>gi|191168738|ref|ZP_03030516.1| Int [Escherichia coli B7A]
 gi|331658405|ref|ZP_08359367.1| integrase [Escherichia coli TA206]
 gi|190901228|gb|EDV60999.1| Int [Escherichia coli B7A]
 gi|323172004|gb|EFZ57648.1| integrase [Escherichia coli LT-68]
 gi|331056653|gb|EGI28662.1| integrase [Escherichia coli TA206]
          Length = 334

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 97/250 (38%), Gaps = 36/250 (14%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSN 123
            L   +I A+ S++    +   S  R ++ +      LKK  +   E  +  +  L  S 
Sbjct: 101 DLDKLKIIAWRSQKIADGLKPSSANRYMNRLSGMFTVLKKIGLWDAEHPVRGISILYVSP 160

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
                L++K+   L+D            ++     +  L    G R SEA  L  + I+ 
Sbjct: 161 REMAFLSQKEVALLLDT-----------LEGDYWRVALLCLSTGARWSEACKLRGEQIVH 209

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           ++ T  ++ K  + R VP+  +V +AI        F++                      
Sbjct: 210 NRVTF-LETKNGRKRTVPISQAVCEAIKTRETGGLFEVK--------------------- 247

Query: 244 QRYIRQLRRYL--GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            R      + +   LP    AH LRH+FA+H + NGG++ ++Q ILGH  +  T  Y + 
Sbjct: 248 YREFCLALKRVKPDLPKGQAAHVLRHTFASHFVMNGGNIIALQKILGHATIQQTMAYAHF 307

Query: 302 NSKNGGDWMM 311
                 D + 
Sbjct: 308 APDYLQDAVA 317


>gi|332884572|gb|EGK04830.1| hypothetical protein HMPREF9456_03300 [Dysgonomonas mossii DSM
           22836]
          Length = 366

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 58/289 (20%), Positives = 112/289 (38%), Gaps = 35/289 (12%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++++    R +   TL+++     +   F          I+T   L+YT I AF    R 
Sbjct: 108 FIESEMKLRNMEYNTLKAHVTLVNKLNDF--------KNIKTFADLTYTNIVAFDKYMRD 159

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +KIG+ S+ ++ S    ++K    +++  +S        K  N+ P  L  ++   + + 
Sbjct: 160 KKIGNISINKNHSLFNMYIKIAINKELIQKSPYDLFTPPKGKNNDPVFLTIEEVERIKNL 219

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIR 198
             L+   E          +       G+   +  S +  +I  +++Q  +R         
Sbjct: 220 SGLNEKLERT------RDLFVFQCYTGMAYVDMQSFSKNDIQILNEQEIIRSSRTKTDES 273

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR--YLGL 256
            + L     K I E Y                       ++   +  Y++ L     + +
Sbjct: 274 FILLFLPDAKKIAEKY-----------------NYSLPKISNQKYNDYLKLLIAHPEVNI 316

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
               T+HT RH+FAT+LL+ G  L ++   LGH  +  TQ+Y  + SK 
Sbjct: 317 NKKVTSHTARHTFATYLLNKGISLETVSKTLGHSNIKQTQLYARILSKK 365


>gi|116619766|ref|YP_821922.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222928|gb|ABJ81637.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 303

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/256 (21%), Positives = 102/256 (39%), Gaps = 16/256 (6%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           +      G+S+ TL     D      FL      + TI   R    T++ AF+ K  T+ 
Sbjct: 28  RYRRAHNGVSERTL---VRDVETASGFLEQLRSGRTTIARAR---LTDVDAFVRKLATR- 80

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALTLVDN 140
           +  R++  + S ++ FL++L+     T      +   +       PR L       ++  
Sbjct: 81  LSRRTVADTCSSLRGFLRFLRITGRMTSDLANEVVAPRYRIDERPPRCLPWSDVQKIL-- 138

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRI 199
                   T+    R+ AI+ LL   GL  +E L +  +++      L++ Q K + +  
Sbjct: 139 ---RAISRTEAPGKRDYAIVLLLATYGLGAAEVLGIRLEDVNWQGGVLKVCQPKTNVLIE 195

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PL 258
           +PLLP+V +A+  Y             + +   +  +PL  G  +  IR      G+   
Sbjct: 196 LPLLPAVAQAMTAYLRWERPPARSVQHIFVRENMPYEPLTSGAIRHCIRHYAHLAGISTK 255

Query: 259 STTAHTLRHSFATHLL 274
              AH LRH  A+ ++
Sbjct: 256 VIGAHALRHYAASRIM 271


>gi|295105295|emb|CBL02839.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 341

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/305 (19%), Positives = 113/305 (37%), Gaps = 28/305 (9%)

Query: 18  RQNWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
            ++W      E     ++  T +SY+   +          +E    + +  +   +I  F
Sbjct: 46  FEDWADT-WFEGHKDNIAPTTQESYKYCLKML--------KEGFYHRPLTVIRPIDIENF 96

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +   R     D  + ++   +    +  +   +   + +     ++ S +  R    K+A
Sbjct: 97  LKGMRRDGRSDSYISKARGMLYQIFQKAEANDLVRRNPVRLAEKMRASGTAKR----KEA 152

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-- 192
            T  +   L        +       + LL G G+R+ E L+L PQ I +D S + I+   
Sbjct: 153 FTTAEVAHLMKVLPDDRMGLS----IRLLLGTGMRMQELLALEPQFIEEDGSVIHIRQAV 208

Query: 193 ---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK---PLNPGVFQRY 246
              KG      P      + I    ++ P  + L      F     K   P NP  F+  
Sbjct: 209 KVVKGTVSIGSPKSKDSIRDIPVPLNVRPCAIKLRDTTDQFIWESPKTGLPCNPTHFRDV 268

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
            R+     G     T H+ RH++ + + + G D+++IQSI+GH     T+ Y +V     
Sbjct: 269 FRKSLEEAGDVRLLTPHSCRHTYVSQMQALGVDIQTIQSIVGHADTEMTEHYLHVQESIR 328

Query: 307 GDWMM 311
              + 
Sbjct: 329 QSAIQ 333


>gi|291515442|emb|CBK64652.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 409

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 66/312 (21%), Positives = 124/312 (39%), Gaps = 29/312 (9%)

Query: 14  LLKERQNWLQNLEIERG---LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           L++    +L++ E +R     +  TL  Y         FL +  E K+     ++L    
Sbjct: 109 LIETFDAYLKDFEEKRAGKDRAIGTLVCYRKARNYLAAFLRY--EYKVEDIPFKELKREF 166

Query: 71  IRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           I  ++    T +++   S+   +  +K       K    T       R +  +    R L
Sbjct: 167 IERYVVYLSTVRRMLPGSIHTPIKKLKLMTYTAFKNGWITTDPFSGFR-ISVTYRDRRFL 225

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--- 186
           +E +   +++  L +      +  A    I       GL  ++   L+ ++I  D+    
Sbjct: 226 SESELQAVMNVRLPN------YKTAIVRDIFVFCCFTGLCYADVKKLSREDIHTDERGDM 279

Query: 187 -TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             +  + K      V LLP  ++ + +Y  L   D        +F       +N      
Sbjct: 280 WIIDQRTKTGTQFRVKLLPVAKQLVEQYSRLQLPD------DKVFPVKDDNSMNMS---- 329

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            +R + R+ GL  + T HT RH+FAT + L+ G  L ++  +LGH  ++TTQIY  + + 
Sbjct: 330 -LRHVARHAGLSFNPTTHTGRHTFATTVTLTQGVPLETVSKMLGHKHITTTQIYAKITND 388

Query: 305 NGGDWMMEIYDQ 316
             G  M  + D+
Sbjct: 389 KIGRDMDVLTDK 400


>gi|255009702|ref|ZP_05281828.1| putative transposase [Bacteroides fragilis 3_1_12]
 gi|313147488|ref|ZP_07809681.1| transposase [Bacteroides fragilis 3_1_12]
 gi|313136255|gb|EFR53615.1| transposase [Bacteroides fragilis 3_1_12]
          Length = 408

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/317 (17%), Positives = 123/317 (38%), Gaps = 32/317 (10%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + +LQ +++    +  T   YE   ++ + F+ F     ++   I+ ++   I  F+
Sbjct: 115 QHNEQYLQKVKM--NTADKTYSRYELTKKRLMEFMKFKY--SVSDMLIKDINVVFIEDFL 170

Query: 76  SKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
              +        +  + +   ++ + + K   + T     N R ++   +    L  ++ 
Sbjct: 171 LYIKNNYGCSHNTAMKFVQRFRTVVNFAKNTGLVTADPFGNYR-VRFERTDRDYLTMEEI 229

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRI 190
             + ++        TK ++      ++  Y   L   +   L  ++       +   +R 
Sbjct: 230 TAIYNHKF-----STKRLEQVRDLFVFSCY-TALSYIDVCELRQEDIRTGFDGNLWIIRK 283

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           + K +    V LL   +  + +Y            +  L  G     ++      Y++++
Sbjct: 284 RHKTNVTSTVRLLDIPKAILEKY------------KDKLPNGKILPVISNQKMNDYLKEI 331

Query: 251 RRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNS---KNG 306
               G+  + T H  RHS AT  LLSNG  + ++  ILGH  + TTQIY  +      N 
Sbjct: 332 AGICGIEKNLTYHVARHSCATSVLLSNGVPIETVSKILGHTNIRTTQIYARITDLKVSND 391

Query: 307 GDWMMEIYDQTHPSITQ 323
            + + +  D TH + ++
Sbjct: 392 MEMLAQKLDATHRTASR 408


>gi|269121142|ref|YP_003309319.1| integrase family protein [Sebaldella termitidis ATCC 33386]
 gi|268615020|gb|ACZ09388.1| integrase family protein [Sebaldella termitidis ATCC 33386]
          Length = 263

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 62/306 (20%), Positives = 118/306 (38%), Gaps = 51/306 (16%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ++++E +N LQ     +  S+ T+ +Y  D ++FL FL     E I           EI 
Sbjct: 3   KIIEEYKNTLQM----KFFSQTTINAYMADIKKFLEFLPEKNLEII---------PKEIH 49

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR--ALN 130
            +    +       ++ R ++ + +F K L           + ++  K      +   L 
Sbjct: 50  NYRKYLK-NNYKVSTINRKVTTLNNFFKSLGID--------VRLKAEKVHRMSIKDDFLT 100

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           E++   L+   +      T          + +L   G+R+SE   +  +N       + I
Sbjct: 101 EREYKRLLKFAINEKIRIT----------MVVLAHTGIRVSELKYIHVEN--LKTGIVEI 148

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           + KG  IRI+ L  ++   + +Y           I+           ++       ++Q 
Sbjct: 149 ENKGK-IRIIILSKNLINILKKYCGERNIKSGSIIE-----------VSRIYIHNSLKQS 196

Query: 251 RRYL--GLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
                 GL      AH  RH FA   L    ++ ++  ILGH  L TT+IYT++N +   
Sbjct: 197 AANARGGLKKSKVHAHAFRHLFAVQFLKKNNNIAALADILGHSSLETTRIYTSLNKRQFQ 256

Query: 308 DWMMEI 313
           + + +I
Sbjct: 257 EMLEDI 262


>gi|227522679|ref|ZP_03952728.1| possible bacteriophage integrase [Lactobacillus hilgardii ATCC
           8290]
 gi|227090127|gb|EEI25439.1| possible bacteriophage integrase [Lactobacillus hilgardii ATCC
           8290]
          Length = 374

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/308 (17%), Positives = 120/308 (38%), Gaps = 34/308 (11%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L      W Q  +  +GL+  T+Q Y         F             ++++++T+ + 
Sbjct: 62  LPDFFNKWYQTFKSPKGLADNTVQIY--------AFTKHVLANSSLNMPLKEITFTDYQQ 113

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLP-RALNE 131
           F ++   ++    SL++  + I++ ++   + +    +   ++  + K S  L  + L  
Sbjct: 114 FFNQL-GKRYSVSSLRQVNTIIRACVRKALQMRQIPYNFTDDVEISGKASAPLSSKYLEV 172

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
                L D  + +    T        AIL+ L   G R +E   +T   +   + T+ I 
Sbjct: 173 DDIKKLTDYCVANIQELTDVSKM---AILFSLL-TGARFAEVAGMTWDCVNFREKTITIN 228

Query: 192 GKGD-------------KIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLP---LFRGIR 234
                             IR + +  ++   + ++        L +  + P   +F    
Sbjct: 229 KTIGMQSRTFEKTKNSSSIRTLSIDLTLLTMLQKWKLISDHHMLKVGFKNPMNLVFYTPF 288

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            +PL   +    ++++ R   L    + H LRHS A++L++ G  ++ +   LGH  + T
Sbjct: 289 HRPLYNSMVNNDLKKICRK-NLSREISFHGLRHSHASYLIAKGISVQYVSKRLGHKSIGT 347

Query: 295 TQ-IYTNV 301
           TQ +Y + 
Sbjct: 348 TQNVYIHF 355


>gi|167755354|ref|ZP_02427481.1| hypothetical protein CLORAM_00868 [Clostridium ramosum DSM 1402]
 gi|167704293|gb|EDS18872.1| hypothetical protein CLORAM_00868 [Clostridium ramosum DSM 1402]
          Length = 377

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/274 (17%), Positives = 101/274 (36%), Gaps = 32/274 (11%)

Query: 64  RQLSYTEIRAFISKRRTQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
            +L+  ++  F +    +      +  +++K  LS  KS + Y++     + +    +  
Sbjct: 110 NELNTKQVELFTASLLKEGKNGKPLSPKTVKDILSLFKSIIGYIESEHNISIN--TKIIY 167

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            KK     R L++++ + L +  LL      K+        + +    GLRI E  +L  
Sbjct: 168 PKKQKEKERILSKEEFINL-NQTLLQEIDSCKFG-------VLIAMATGLRIGELCALKW 219

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE---------------YYDLCPFDLNL 223
           ++I   ++ + +     +I+ +         I +                          
Sbjct: 220 KDISLKENYIYVNKTMQRIKNIYSDNPKTIIIEDSPKSSTSNRKIPIPANLITLFKQFRQ 279

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
           N    L  G   K + P   +R  R+  +  G+      H LRH+FAT  +  G +++ +
Sbjct: 280 NDDCYLLTGRSDKFVEPRSLERKFRKYIKNAGIEK-ANFHMLRHTFATMCIEGGFEIKCL 338

Query: 284 QSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQ 316
             ILGH     T   Y + +      W+ +  +Q
Sbjct: 339 SEILGHSGSQITLDRYVHSSFDLKKSWIDKFSNQ 372


>gi|158340860|ref|YP_001522028.1| phage integrase [Acaryochloris marina MBIC11017]
 gi|158311101|gb|ABW32714.1| phage integrase [Acaryochloris marina MBIC11017]
          Length = 298

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 110/287 (38%), Gaps = 13/287 (4%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            L+  T +SYE      L     +        ++  L    +  +++      +   +  
Sbjct: 17  HLATSTARSYELTLMPLLKRYGSW--------SVELLDADILSEYLNSLTH--LSYTTHH 66

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R  + +K+ L +  +++    + I  + +     +    L+  Q +  +    L T ++ 
Sbjct: 67  RHQATLKALLNFAVRQRYIRSNPIAQLEHRSPDKAKGEHLS-DQPIRFLKPEQLTTLYQA 125

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
            + DAR  A++ LL+  G RISE L+L    +  +Q   ++ GKG+K R      +   A
Sbjct: 126 VYNDARLYALVKLLHHSGARISEILALDLAEVDLEQRQFQVVGKGNKTRWCFYSENAAAA 185

Query: 210 ILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           +  Y     +  +  +         +   L+      +  Q  +          H LRH+
Sbjct: 186 LQTYIQHYRYTPSPALFTARKTPTSQVTRLSYRTAHHHWHQSIQGYPQLQGIRLHDLRHT 245

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           FAT  +   G L  +++++GH  + TT  Y  V S+         + 
Sbjct: 246 FATERVGLMG-LEELRALMGHQHIQTTLRYQTVTSEQAKGAAQRAFQ 291


>gi|291295791|ref|YP_003507189.1| integrase family protein [Meiothermus ruber DSM 1279]
 gi|290470750|gb|ADD28169.1| integrase family protein [Meiothermus ruber DSM 1279]
          Length = 374

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/323 (17%), Positives = 110/323 (34%), Gaps = 38/323 (11%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
           G  L +     L +  + W       +GL   T+Q+Y    +Q L  LA           
Sbjct: 58  GYGLIQPTRLRLGEWLERWADERARSKGLRPSTVQNYRNY-QQLLKPLA--------ATP 108

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           + +LS   IRA  ++     +   + +     +++ L+   +  +   + +  +      
Sbjct: 109 LTRLSPLAIRARFAELAE--LSPSTRRHLYQFLRAALRDAVRVGLLEANPMDAVDPPTGG 166

Query: 123 N-SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
               PRA N +Q    +                R   + Y++   GLRI EA++L  Q+ 
Sbjct: 167 TVRPPRAWNREQVSAFL----------AAAQGHRLYPMFYVMLTTGLRIGEAMALRWQDW 216

Query: 182 MDDQSTLRIQGKGDKI---------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL--- 229
             ++  +R      +               L    + IL  +     +     +  L   
Sbjct: 217 QGEKLWIRHTLTKQRTLGPTKTLGSSAPIYLDLATQTILSEHRTRQAEERATAKRWLDHD 276

Query: 230 --FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
             F    G PL+     R  + L     +P     H LRH++ +  L  G   + +   L
Sbjct: 277 LIFPSEVGTPLSYRNVMRTFQALTEQAKVPR-IGLHGLRHTYTSMALQAGLSPKQVADRL 335

Query: 288 GHFRLS-TTQIYTNVNSKNGGDW 309
            H   + T +IY ++  ++    
Sbjct: 336 RHKDPALTLRIYQHLQEEDRRQA 358


>gi|168184229|ref|ZP_02618893.1| CAAX amino terminal protease family protein [Clostridium botulinum
           Bf]
 gi|182672699|gb|EDT84660.1| CAAX amino terminal protease family protein [Clostridium botulinum
           Bf]
          Length = 355

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 64/332 (19%), Positives = 137/332 (41%), Gaps = 60/332 (18%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           + N  P +      +    +L++++I R  +  T+ +++     F +         ++ +
Sbjct: 56  KNNIDPSMSEITFKQFTDMYLEHMKIYR--TTNTILAFKTVLNHFTL---------LSNK 104

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLK---RSLSGIKSFLKYLKKRKITTESNILNMRN 118
            + ++S  +I+  +       +   +++   R L+ I  F   +    I  +    N++ 
Sbjct: 105 ELDKISNIDIQRIVDNLTLTGLNPSTIQEYIRKLNTI--FKSAMDDYNIIDKLPTKNLKF 162

Query: 119 LKKSNSL-PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
            K    +  RALNE +   L++           +   +   ++ L   CGLR+ E L LT
Sbjct: 163 NKSKQQVNKRALNENEENKLLE----------DFKSNKYYLVILLGLKCGLRLGEILGLT 212

Query: 178 PQNIMDDQSTLRIQGKGDKI----------------RIVPLLPSVRKAILEYYDLCPFDL 221
             +I +   T+ I  +  ++                R +P+  S    + +Y  +    +
Sbjct: 213 WSDIDEVNKTISINKQWKQVNPTKYNFGELKSKNSNRTIPISQSTLDELKKYKKI----V 268

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
           N++ +L  F+      +        + +L +  G   + T H LRH++AT L+SNG D +
Sbjct: 269 NIDNRLFKFKNTNSSCI-------CLNRLLKLKG--YNITVHELRHTYATKLISNGVDFK 319

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           ++  +LGH    T + Y++VN     D M + 
Sbjct: 320 TVAQLLGHTVEQTMKTYSHVND----DMMKKA 347


>gi|307566131|ref|ZP_07628589.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345319|gb|EFN90698.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 407

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 58/314 (18%), Positives = 128/314 (40%), Gaps = 30/314 (9%)

Query: 9   IVSFELLKERQ-NWLQNLE-IERGLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQ 65
           ++ + L K+R  N+L   +      +K  L+  +    +F  FL   Y   + +I+    
Sbjct: 110 MLGYRLKKDRNINFLDYYQAYIDSYTKKDLRMIKIALNRFKDFLKEQYPLYEFSIKP-DL 168

Query: 66  LSYTEIRAFISKRRTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           ++   +  F+   +++ +G   +S+ +     K  ++Y    ++  +    ++       
Sbjct: 169 ITKDMMERFVEYLQSRSVGEGAKSIYQRF---KKVVRYAIDHEVMLKDPCKDVVCKVDDQ 225

Query: 124 SLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            L +  L+  +  +L+     + +   +       A +  LY CGLR  +   LT +NI 
Sbjct: 226 ILRKDVLSMDEIQSLIQCHYDNENPNVR------RAFILCLY-CGLRFCDVKDLTYKNID 278

Query: 183 DDQSTLRI--QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLN 239
                L+              ++  +   +L      P DL+ +I  LP +         
Sbjct: 279 YTNRLLKFEQNKTKGHSAHSGVVIPLNDGLLSLIGDAPEDLDSSIFNLPSYESCS----- 333

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                + +++  +  G+    + H  RHSFA ++L+NG +++++ S+LGH  L  T+ YT
Sbjct: 334 -----KSVKRWVKRAGINKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYT 388

Query: 300 NVNSKNGGDWMMEI 313
               K   + +  +
Sbjct: 389 RAVDKLKSEAINSL 402


>gi|157155436|ref|YP_001462104.1| phage integrase family site specific recombinase [Escherichia coli
           E24377A]
 gi|157077466|gb|ABV17174.1| site-specific recombinase, phage integrase family [Escherichia coli
           E24377A]
 gi|324113805|gb|EGC07780.1| phage integrase [Escherichia fergusonii B253]
          Length = 331

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 100/273 (36%), Gaps = 34/273 (12%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-F 98
             D  +  +        ++ +    QL+   I  +        +   S+ R L+ +   F
Sbjct: 78  RGDIERGRLTTIIAKFAEMGVSRADQLTKKTITDYRVVMMNDGLKPASVNRHLAIMSGMF 137

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
            K +   +  + +    ++ L+++ +    L+ ++   L+  +     + T         
Sbjct: 138 TKLIDAGEYHSHNPFREIKRLREAVTEMAFLSSEEITRLLSMLDGDELNAT--------- 188

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
              +    G R SE  +L  ++I++   T  ++ K  K R +P+   + K I        
Sbjct: 189 --LVCLSTGGRWSEVSNLKAEHIINQMVTF-MKTKNGKRRTIPVSQDLIKRI-------- 237

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR-YLGLPLSTTAHTLRHSFATHLLSNG 277
                       +      L    + +    LR     LP     H LRH+FATH + NG
Sbjct: 238 ------------KTKNSGRLFNASYYKVRNALREVKPDLPDGQAVHVLRHTFATHFIMNG 285

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           G++ ++Q ILGH  +  T  Y +       D +
Sbjct: 286 GNIITLQRILGHSNIQQTMTYAHFAPDFLQDAV 318


>gi|320333468|ref|YP_004170179.1| integrase family protein [Deinococcus maricopensis DSM 21211]
 gi|319754757|gb|ADV66514.1| integrase family protein [Deinococcus maricopensis DSM 21211]
          Length = 350

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 92/274 (33%), Gaps = 25/274 (9%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102
             +    +A     ++    + +L+   + AF            ++      +K  L+  
Sbjct: 66  LGKLEWHVALTQGHEVGDTPLGRLTPARLEAFYRHLMA-GHKRSTVGDVAGLVKRALRRA 124

Query: 103 KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
            + +I   +        +   +        Q L   D   L  +     +      + +L
Sbjct: 125 VRHEIIPNNPADATELPRGRRA--DRERVAQILQAGDVQRLVKAAREDTLWP----LWHL 178

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQ---------------GKGDKIRIVPLLPSVR 207
              CGLR  E L L  +++      L I                      R +PL   V 
Sbjct: 179 ALSCGLRHGELLGLQWRDLSWAHQELSINRTVIVVNNRPTVGSPKTSSSERAIPLPGEVI 238

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             +  +      +   +    LF    G PL     +R  ++L    GLP S   H LRH
Sbjct: 239 ATLRAWQT--NPERPHSADGWLFCTASGTPLLQNNVRRSWKRLLGRAGLPNSIRIHDLRH 296

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTN 300
           ++A+ L+++G D R++  +LGH     T   Y +
Sbjct: 297 TYASMLIAHGIDPRTVSDLLGHSDTRFTLSHYVH 330


>gi|237737422|ref|ZP_04567903.1| DNA integration/recombination/invertion protein [Fusobacterium
           mortiferum ATCC 9817]
 gi|229421284|gb|EEO36331.1| DNA integration/recombination/invertion protein [Fusobacterium
           mortiferum ATCC 9817]
          Length = 350

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/256 (20%), Positives = 104/256 (40%), Gaps = 17/256 (6%)

Query: 60  IQTIRQLSYTEIRAF-ISKRRTQKIGDRSLKR-SLSGIKSFLKYLKKRKITTESNILNMR 117
           ++ +  +  T+I+ + + K   +     S K    S +    +Y  K    + + +  + 
Sbjct: 105 LEPLNDMQITDIKLYHLQKLIDEIDTSWSFKNGCKSVLNMIFEYAFKNDFISTNKVKFIE 164

Query: 118 NLKKSNSL-PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             KK   +  +   +K+   L +N+   T H           I+ +L   G+RI E  +L
Sbjct: 165 LGKKEKVIERKIFTQKEIEILWENLNSKTYHGKYTY------IILILIYTGMRIGELFNL 218

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
             ++I  +  T++++       +  +       I         D  +  Q    +G    
Sbjct: 219 KTEDIDLENRTIKVRVSKTSAGVRTIP------IFSKIFNLFKDNLIIGQEYFVKGDTTT 272

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L+   F+   ++L + LG+    T H  RH+FAT L +   +  SI  ++GH   STT+
Sbjct: 273 QLSYATFKPRFKKLLKELGIQEH-TIHDTRHTFATMLNNANANSTSIIRLIGHSNFSTTE 331

Query: 297 -IYTNVNSKNGGDWMM 311
            IYT+ +++     M 
Sbjct: 332 NIYTHKDTEELRKAME 347


>gi|298491503|ref|YP_003721680.1| integrase family protein ['Nostoc azollae' 0708]
 gi|298233421|gb|ADI64557.1| integrase family protein ['Nostoc azollae' 0708]
          Length = 193

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 71/185 (38%), Gaps = 12/185 (6%)

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           S      L  K+   ++       +H       R++AI+ L++  GL  +E +SL    I
Sbjct: 13  SKREREYLRPKEVEAMI-----KAAHSFGTHGVRDAAIILLMFRHGLSTAELVSLKWSQI 67

Query: 182 MDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
             +   + I+  K     I PL      A+           +      +F   R  PL+ 
Sbjct: 68  DLNDGYIEIRRVKHGHDSIHPLRAPELSAL------RQIKRDYPETQYVFVSERKAPLST 121

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                 I +     GL  S   H LRH+   +L S G D R+IQ  LGH  +  T  YT 
Sbjct: 122 RTIPHIIARAGELAGLNESVHPHQLRHACGYYLASQGHDTRAIQDYLGHKNIHHTVRYTQ 181

Query: 301 VNSKN 305
           ++ + 
Sbjct: 182 MSPQR 186


>gi|194449832|ref|YP_002047249.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194408136|gb|ACF68355.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
          Length = 345

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 88/241 (36%), Gaps = 33/241 (13%)

Query: 74  FISKRRTQKIGDRSLKRSLSG-IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           F   +R  ++  R++    +  +  F +  +  +    + + N+R  +   S    L  +
Sbjct: 122 FARTKRVAQVSPRTMNLEHAYFLAVFNELKRLGEWDAPNPLENVRQFRTEESEMAYLTGE 181

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q   L++   + ++ + +        I+ +    G R  EA  L    I   + T  I+ 
Sbjct: 182 QIDRLLEECRVSSAKDLE-------MIVKICLSTGARWGEAEKLKRSQITAGKITF-IKT 233

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG + R +PL   +   +                  LF                 R    
Sbjct: 234 KGKRNRTIPLDTEIIAEL------------PKKNGALFSPCYY----------AFRSALA 271

Query: 253 YLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
             G+  P     H LRH+FA+H + NGG++  +Q ILGH  +  T  Y +    +  + +
Sbjct: 272 RAGIDLPAGQLTHVLRHTFASHFMMNGGNILVLQKILGHTDIKMTMRYAHFAPNHLEEAL 331

Query: 311 M 311
            
Sbjct: 332 K 332


>gi|296453590|ref|YP_003660733.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296453895|ref|YP_003661038.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296455014|ref|YP_003662158.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183021|gb|ADG99902.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183326|gb|ADH00208.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296184446|gb|ADH01328.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 400

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/300 (17%), Positives = 123/300 (41%), Gaps = 19/300 (6%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           + L E V   L    + W   L    GL+  T+  Y      FL +L  +      + ++
Sbjct: 100 SGLAEPVVPGLAVVMECWEAYLAGS-GLASATVGHYRRMAGLFLTWLESH-----GVVSL 153

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
                + +  F++  R++   + S++ + S ++   ++L +  +      + +  +++++
Sbjct: 154 DGSDGSHVLGFLAGLRSR-WSESSMRHAASDLRPLFRWLGRDDLAD---AIGLAGIRRTH 209

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           ++   L + +   L++         ++ + +R++AI  L   CGLR  + + L   ++  
Sbjct: 210 AIAGTLPDDEHRRLLEACA------SRSVPSRDAAITLLSLTCGLRACDVIGLRIADVDW 263

Query: 184 DQSTL-RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           D  ++  +Q K      VP+   +   +  +        + +     ++           
Sbjct: 264 DSMSIGLVQRKTGNPLTVPMTGPLAARLASWLLDERPATDDDRVFVRYKAPHVALRGHSS 323

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY--TN 300
               I ++ R+ GL     +  LR + AT +L     L +I ++LGH    +T++Y  T+
Sbjct: 324 VYEAISRVMRHAGLGRRGGSRLLRRNAATRMLEAATPLPTISAVLGHADPDSTRVYMATH 383


>gi|288927179|ref|ZP_06421059.1| putative nicotinate-nucleotide pyrophosphorylase [Prevotella buccae
           D17]
 gi|315608605|ref|ZP_07883588.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
 gi|288336048|gb|EFC74449.1| putative nicotinate-nucleotide pyrophosphorylase [Prevotella buccae
           D17]
 gi|315249708|gb|EFU29714.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
          Length = 335

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 58/263 (22%), Positives = 108/263 (41%), Gaps = 25/263 (9%)

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           L+   ++A+   R      +R+L    S I  F +Y+             M   K  + +
Sbjct: 52  LTKELVKAWRESRLND--SERTLYDKWSIISQFSRYMCHCGFVCYVPP--MPRQKDKSFI 107

Query: 126 PRALNEKQALTLV---DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           PR    ++        D++  H    T  + +    +  +LY  G+RI EAL+L  +++ 
Sbjct: 108 PRVFTHEEIERFFIAADSLRFHNIQPTLCLFSM-PTLFRVLYATGIRIGEALNLNIEDVN 166

Query: 183 DDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPF---DLNLNIQLPLFRGIRGKPL 238
            ++ T+ I+  K  + RIVP+ PS+   + +Y             + + PLF    G  +
Sbjct: 167 LEKGTILIRKSKNQRQRIVPITPSLDAVLHQYISYRDRMPLKSIRHKESPLFISHTGGRV 226

Query: 239 NPGVFQRYIRQLRRYLGLP-----LSTTAHTLRHSFATHLLS----NGGDLR----SIQS 285
             G   ++ R++ +   +P          H LRH+FA H L     +G D+      +  
Sbjct: 227 LKGTAYKWFRKILKLCDIPFIGGNRGPRVHDLRHTFAVHSLMKQVKSGKDMYCLLPILSV 286

Query: 286 ILGHFRLSTTQIYTNVNSKNGGD 308
            +GH  L  T+ Y  + S+   +
Sbjct: 287 FMGHKTLLGTESYIRLTSEMFPE 309


>gi|296163014|ref|ZP_06845790.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886758|gb|EFG66600.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 419

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/331 (17%), Positives = 115/331 (34%), Gaps = 50/331 (15%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-------------R 78
           S  T ++Y  +  + +++     E    + ++        R F+ +             R
Sbjct: 86  SAATRRAYRKEAERLILWA--IVERDCALSSLTTDDAIAYRGFLRRPTPRERWIGPSRPR 143

Query: 79  R-------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL----PR 127
                   T  +  RS   +L+ + +  ++L +++    +    ++    +  +     R
Sbjct: 144 HSVEWRPFTGPLSPRSAAYALNVLSAMFRWLVEQRYVLANPFAGVKVRSHAERVGLDASR 203

Query: 128 ALNEKQALTL--VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD- 184
             +E + L +  + + L  +   ++    R   +L   Y  GLR SE +     +I  D 
Sbjct: 204 GFSEGEWLLIRTLADGLEWSYGWSEAAAQRLRFLLDFGYATGLRASELVGAKLGDIRRDG 263

Query: 185 --QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN---LNIQLPLFRG------- 232
                L + GKG K   V L    R A+ +Y       +     N   PL          
Sbjct: 264 HGDHWLHVLGKGRKPGKVALPALARTALDQYLLQRSLPVTPECWNPATPLIVSLEEDGAH 323

Query: 233 IRGKPLNPGVFQRYIRQLRRY--------LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
           I    L+  V +R+                      + H +RH+ A+H L+ G +L  ++
Sbjct: 324 IESTRLSR-VLRRFFVLAADAIQGERPAAAEKLRRASPHWMRHTHASHALARGAELIMVR 382

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
             L H  +STT  Y + +         + + 
Sbjct: 383 DNLRHASISTTSTYLHSDEVQRARQFDQAFR 413


>gi|257887017|ref|ZP_05666670.1| site-specific recombinase [Enterococcus faecium 1,141,733]
 gi|257823071|gb|EEV50003.1| site-specific recombinase [Enterococcus faecium 1,141,733]
          Length = 391

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/296 (17%), Positives = 102/296 (34%), Gaps = 48/296 (16%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRT--------QKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           I    + + +  + + FI++  T        + +   + K   + + +  K   +     
Sbjct: 91  IGKYKLDKYTRADHQRFINQLLTKKGLGRTKEGLSVTTAKSINATLSNAFKKAIQLGYIK 150

Query: 110 ESNILNMRNLKKS--NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
            +    +   +        +     Q+   ++        E  +I         +++  G
Sbjct: 151 NNPTSFVEFPRNPSDKKKVKYYTFDQSELFLEF----AKKEKSFIWYP---FFLIIFDQG 203

Query: 168 LRISEALSLTPQNIMDDQSTLRIQ---------------------GKGDKIRIVPLLPSV 206
           LR SEAL L   +I   Q+TL I                            R +P+   V
Sbjct: 204 LRKSEALGLQWADIDFSQNTLNINRERLGAAEKGPNKGLIITDDTKTPSGTRSLPMTKRV 263

Query: 207 RKAILEYYDLCPFDLNL-----NIQLPLFRG----IRGKPLNPGVFQRYIRQLRRYLGLP 257
           +KA+L   +    +        + +  +F       +G P+          ++ +   LP
Sbjct: 264 KKALLTLRNQVIKEFGFLPETDDHEAFIFINTYGKNKGIPIRDRTVNGASHRIEKRASLP 323

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              T H  RH+FA      G  L  I+  LGH  +STTQ+Y +++ +     M ++
Sbjct: 324 -HITVHDGRHTFAARTRQAGIPLEDIKDFLGHKDVSTTQVYAHISPEVKKRSMNQL 378


>gi|254885277|ref|ZP_05257987.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|294777930|ref|ZP_06743369.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|319643368|ref|ZP_07997994.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|254838070|gb|EET18379.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|294448219|gb|EFG16780.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|317384997|gb|EFV65950.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
          Length = 386

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 93/251 (37%), Gaps = 12/251 (4%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKK 121
              L+Y  +  F            ++ + +  +KSF+     +     +N    R  +K 
Sbjct: 143 FEDLTYNFVTDFEKFLYESGYQTNTVAKHMKHLKSFVNAAINKGYIDPNNYAFRRYKIKM 202

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
                  L  ++   L +  L   +     ++    A L+  Y  GLR S+ ++L  +NI
Sbjct: 203 KEGKHVFLLPEEMKKLEEVSL---TGRNSCLEHTLDAFLFCCY-TGLRYSDFVNLNEKNI 258

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
           +     L +     K      LP     +L              +   F  I+    N  
Sbjct: 259 VKMDGKLWLIFDSVKTGTEVKLPL---NLLFEGKALTLLQKYQGKWSSFFSIK----NNS 311

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              + + ++ +   +    + H+ RH+ AT L+  G ++ ++Q +LGH  L+TTQIY  V
Sbjct: 312 SVNKELIRIGKLAKISKHFSFHSARHTNATLLIYKGANITTVQKLLGHKNLATTQIYGEV 371

Query: 302 NSKNGGDWMME 312
                   + +
Sbjct: 372 MGSTIIRDLKK 382


>gi|229140584|ref|ZP_04269139.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST26]
 gi|228643145|gb|EEK99421.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST26]
          Length = 322

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 114/298 (38%), Gaps = 19/298 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           VS E     +++L   + + G +  TLQ Y  D R  L  L  + E K     + +L+  
Sbjct: 17  VSQENKNLVKDFLIEKKSQ-GKAASTLQQYHWDLRIILFLLHQHFENK----NLIELTRK 71

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRN-LKKSNSLP 126
           +IR      +   + +  +   +S ++S L++           +    +R   K      
Sbjct: 72  DIRNLSIIFQELGMSNARVNGLMSALRSALEFCADDDDYDYEFNVGSRVRGLPKNPVREI 131

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             + E+Q   L+D +L              +  L L Y    R +E   +  + + +   
Sbjct: 132 TFITEEQIEWLIDELLEQEK-------YMLATYLALSYYSAARKNEVYQVQKEELTERYF 184

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           T  ++GK  K   +   P V+K I  Y +    D   ++ + +++    K LN   F  +
Sbjct: 185 TNVVRGKRGKKFRLYYNPRVQKCIRLYIEQRGKDTIPDLFVRVYKNGERKLLNKSAFNYW 244

Query: 247 IRQLRRYL----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            +   + L    G       H  RHS   +L   G  L  ++S+  H  +STTQ Y  
Sbjct: 245 CKIFAKMLCEKEGKEYKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSYLK 302


>gi|291288556|ref|YP_003505372.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290885716|gb|ADD69416.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 386

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 107/292 (36%), Gaps = 35/292 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ ++ +  ++K T ++        L F   +    I  + +  ++  +IR  ++    
Sbjct: 92  YLEWIDHKTHIAKNTRRT-------MLSFHRNHISPYIGHKLLGDITEKDIRMMMTVMSK 144

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                  + R L  ++SF   + +     ES    ++ L+      +  N+++   L+  
Sbjct: 145 VNRNVV-VNRKLRSVRSFFNEVVEEGHLKESPFKKVKYLRNEKVDIKPFNQEELARLLVG 203

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--------- 191
                     +        +  L   G R +E + L    I  +   + I+         
Sbjct: 204 FAEKYPAYESF--------VAFLAFSGCRPNEVVGLKWDKIDWENRKILIREGFVLGEET 255

Query: 192 --GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
                  +R + +   +   +L+  D             +F     + +    F++   +
Sbjct: 256 LLKTDSSVRDIDMTEPLEVLLLQQLDKGI------DSEYVFVNEFNRRICWENFRQKYHR 309

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTN 300
           + +   + +S  A+ LRH+FA+  + NG D+  +  +LGH  L TT   YT 
Sbjct: 310 VLKLKNI-VSRPAYQLRHTFASMAIKNGEDILWVSRMLGHSNLKTTLTTYTR 360


>gi|325300191|ref|YP_004260108.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324319744|gb|ADY37635.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 406

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/294 (18%), Positives = 114/294 (38%), Gaps = 23/294 (7%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD--R 86
           +  ++ T+  YE   R    F++     K+    ++ ++Y  I  F    + QK      
Sbjct: 129 KEYAEGTVLRYERTARYLKEFISEQY--KLADIPLKSINYEFITKFEHFIKIQKNCAQNA 186

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++K  L  +K  +K    +K  T+     +   K++      LNE +   +++       
Sbjct: 187 TVK-YLKNLKKIIKTALIKKWITDDPFAEIH-FKQTKCNREFLNEMELRKIINKDFDIQR 244

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRIQGKGDKIRIVPLL 203
            +T         I       GL  ++  +L  ++     + +  +R   +         L
Sbjct: 245 LQTV------RDIFIFCCFTGLAFTDVKNLKKEHLVQADNGEWWIRKAREKTDNMCDIPL 298

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
             + + ILE Y   P      + LP+    R           Y++++    G+  + + H
Sbjct: 299 LDIPRLILEKYQSNPICNEKGLLLPVPSNQRM--------NSYLKEIADVCGIQKNLSTH 350

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
             RH+FA+  ++N   L SI  +LGH  + TT+IY  + +    + M  + ++ 
Sbjct: 351 IARHTFASLAIANKVSLESIAKMLGHTDIRTTRIYAKIMNSTIANEMKVLQNKF 404


>gi|323973095|gb|EGB68288.1| phage integrase [Escherichia coli TA007]
          Length = 334

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 98/248 (39%), Gaps = 32/248 (12%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSN 123
            L   +I A+ S++    +   S  R ++ +      LKK  +   E  +  +  L  S 
Sbjct: 101 DLDKLKIIAWRSQKIADGLKPSSANRYMNRLSGMFTVLKKIGLWDAEHPVRGISILYVSP 160

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
                L++K+   L+D            ++     +  L    G R SEA  L  + I+ 
Sbjct: 161 REMAFLSQKEVALLLDT-----------LEGDYWRVALLCLSTGARWSEACKLRGEQIVH 209

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           ++ T  ++ K  + R VP+  +V +AI        F++       + + ++         
Sbjct: 210 NRVTF-LETKNGRKRTVPISQAVCEAIKTKETGNLFEVKYREFCLMLKRVKPD------- 261

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
                       LP    AH LRH+FA+H + NGG++ ++Q ILGH  +  T  Y +   
Sbjct: 262 ------------LPKGQAAHVLRHTFASHFVMNGGNIIALQKILGHATIQQTMAYAHFAP 309

Query: 304 KNGGDWMM 311
               D + 
Sbjct: 310 DYLQDAVA 317


>gi|320352532|ref|YP_004193871.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320121034|gb|ADW16580.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 357

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 65/331 (19%), Positives = 125/331 (37%), Gaps = 31/331 (9%)

Query: 2   EGNNLPEIVSFE------LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE 55
           E   LP+ ++ +      LL     +L++   E+  +  T        RQF  +     +
Sbjct: 40  ESEQLPDEIAEQKTHSVCLLDWATEYLRH--AEQNFTGKTFDEKRMAFRQFFAYSGINPK 97

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           E     T  Q+     R  IS  R+    ++  K   +     +K+L+   + +E+    
Sbjct: 98  ESANRLTALQVQKALQRQSIS--RSGNAANKDRKNLSAAWSWGVKFLQ---LPSENPFSK 152

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +              E+   TL D   +  S     +  ++  +LY     G R  E   
Sbjct: 153 VEKFASER------FERYVPTLDDFWKVFHS----LVQDQDKLMLYCYLQTGARRDELFR 202

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           LT  ++   +  +R+  + +K+          K  L  + L     N +++  +F   R 
Sbjct: 203 LTWADVDFFRKRIRLSWRKNKVGEWRSQWLSIKDDLAEWLLRHKKGNSDLKEHVFVSYRS 262

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             L     Q +++++ +  G+      H +RH FA+ L +    L  IQ +L H  L+TT
Sbjct: 263 --LAYQYRQHWLKKVCKEAGV-KPFGFHGIRHLFASILAAQNVPLVEIQYMLRHTSLATT 319

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
           Q Y +   K   + +  +     P +T  +K
Sbjct: 320 QRYIHRLKKENREVLAAL-----PGLTASEK 345


>gi|307592485|ref|YP_003900076.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306986130|gb|ADN18010.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 323

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 108/278 (38%), Gaps = 19/278 (6%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE---IRAFISKRRTQKIGDR 86
            L   + Q+   +       L     +  ++    QL Y     +R  + +         
Sbjct: 37  QLRPQSRQTMRRNLDLMAGLLTNRRCDAKSL-DWAQLRYQHTIALRTVLLEL----YAPS 91

Query: 87  SLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLP---RALNEKQALTLVDNVL 142
           ++ + L+ ++  L   +K K+ + E  +  +   + S       R L+  +   L+    
Sbjct: 92  TVNQMLTALRRVLSEARKLKLISSEDYVDAIELPRVSYQTELKGRYLHPHEVTALMQ--- 148

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVP 201
           + TS E+ +   R+SA+L ++ G GLR  E ++L   +       L I+G KG K RIVP
Sbjct: 149 VATSDESVF-GFRDSALLAIVIGAGLRRGEVVALRLGDFDLTSGDLHIRGAKGGKSRIVP 207

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLGLPLST 260
           L    +  +  +  +        +             L+       +++  +   +  S 
Sbjct: 208 LPQKCQLLVKAWLAVRSMSPGPLLMAISKGKELLWRSLSSQSVLYILQKRAQQAEIS-SC 266

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           + H  R ++ ++LL  G D+ ++  + GH    TT  Y
Sbjct: 267 SPHDCRRTYISNLLEAGVDIVTVSQLAGHSSTLTTAKY 304


>gi|294634567|ref|ZP_06713102.1| site-specific recombinase, phage integrase family [Edwardsiella
           tarda ATCC 23685]
 gi|291092081|gb|EFE24642.1| site-specific recombinase, phage integrase family [Edwardsiella
           tarda ATCC 23685]
          Length = 345

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 63/302 (20%), Positives = 111/302 (36%), Gaps = 49/302 (16%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L +L  ER    +TL     D  +    +  +  E +      + S     A+ +KR   
Sbjct: 68  LVHLWFERH--GITL----RDGEKRKSAM-LWAAECMGSPLATEFSAQLFTAYRAKRLDG 120

Query: 82  K---------IGDRSLKRSLSG-IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           K         +  R++    +  + +F +  +  + +  + + N+R  +   S    L  
Sbjct: 121 KFARTQRVAVVSPRTMNLEHAYFLAAFNELKRLGEWSAPNPLENVRQFRVDESEMAYLTI 180

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           +Q   L+      ++ + +        I+ +    G R SEA +L    I   + T  I+
Sbjct: 181 EQIDQLLYECRNSSASDLE-------TIVKICLATGARWSEAENLRRSQISAGKVTF-IK 232

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            KG + R +PL                 DL L  +LP   G    P          R   
Sbjct: 233 TKGKRNRTIPL-----------------DLKLIGELPKKNGALFTPC-----YYAFRNAL 270

Query: 252 RYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
              G+  P     H LRH+FA+H + NGG++  +Q ILGH  +  T  Y +    +  + 
Sbjct: 271 ERAGIDLPAGQLTHVLRHTFASHFMMNGGNILVLQKILGHTDIKMTMRYAHFAPNHLEEA 330

Query: 310 MM 311
             
Sbjct: 331 AR 332


>gi|288920327|ref|ZP_06414639.1| integrase family protein [Frankia sp. EUN1f]
 gi|288348275|gb|EFC82540.1| integrase family protein [Frankia sp. EUN1f]
          Length = 465

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/103 (34%), Positives = 50/103 (48%), Gaps = 2/103 (1%)

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
           D  + +   +F   RG  L+       +R      G+    + H LRHSFA HLL  G D
Sbjct: 312 DPAVGVGPAVFVSRRGTRLSRQSAWSALRAAADAAGVT-GASPHVLRHSFAAHLLDRGAD 370

Query: 280 LRSIQSILGHFRLSTTQIYT-NVNSKNGGDWMMEIYDQTHPSI 321
           +R +Q +LGH  +STTQIYT         D + E+Y  +HP  
Sbjct: 371 VRVVQELLGHASVSTTQIYTLKNTDLTTMDHLREVYTSSHPRA 413



 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/209 (25%), Positives = 90/209 (43%), Gaps = 12/209 (5%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L +++ ERGL++ ++ +Y  D R++   L+        I+++  +   +I  F    R
Sbjct: 56  RYLDHVDGERGLARNSVLAYRRDLRRYHEHLSGR-----GIRSLGAVGEAQIAQFAITLR 110

Query: 80  TQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           T       +   S+ R L  ++S  +Y  +    +      +R        PRAL   Q 
Sbjct: 111 TGDESHPPLAPASVARMLVAVRSLHRYAAREGDVSADVSGPVRPAAPPRRPPRALTVDQV 170

Query: 135 LTLVDNVLLHTSHETKWIDARNS--AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
             L+         +      R    A+L LLYG G RISEA+ L   ++  D S +R++G
Sbjct: 171 TALILQAGAAAGADQSGPARRLRSAALLELLYGTGARISEAVGLDLDDLDLDGSAVRLRG 230

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           KG + R+VPL      A+  Y       L
Sbjct: 231 KGGRGRVVPLGRYAVIALERYLRAGRPLL 259


>gi|299148781|ref|ZP_07041843.1| integrase [Bacteroides sp. 3_1_23]
 gi|298513542|gb|EFI37429.1| integrase [Bacteroides sp. 3_1_23]
          Length = 397

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 58/318 (18%), Positives = 123/318 (38%), Gaps = 20/318 (6%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL-AFYTEEKITI 60
           +G + P I    L  E    L+ L +   ++  T + +E   + F  FL + Y +  + +
Sbjct: 97  KGKDKPNIFLLSLYAEHNEQLKEL-VGISVALNTYKRHETSLKLFKEFLMSTYQQSDVNM 155

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             +  +   + + ++     +   + +  + +  +        +RKI   S I  +    
Sbjct: 156 NEVDLVMMEKYKHYL--MVVRHNNNNTTVKYIRNLGKVFNMAVERKIIVSSPIEQL---- 209

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
               L     EK+ LT  +  LL     +     +   I       GL   +  SLT ++
Sbjct: 210 ---HLKTMEVEKEFLTGGELELLSKKEFSIERLEQVRDIFLFCCYTGLAYVDVHSLTMKD 266

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I+ D     I+    K   +  +P +  A+         +      LP+        L+ 
Sbjct: 267 IVKDGEKYWIKKARHKTNNMCHIPLITPALNIINKYSVHNQATGRLLPV--------LSN 318

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYT 299
                Y++++   +G+  + T H  RH+FAT + L+N   + ++  +LGH  +  TQ Y 
Sbjct: 319 QKMNAYLKEIAAIVGINKNLTTHCARHTFATTVTLANNVSIENVSKMLGHKSIKMTQHYA 378

Query: 300 NVNSKNGGDWMMEIYDQT 317
            +   +  + M+++  + 
Sbjct: 379 RILDSSIANDMLQVEKKF 396


>gi|212694197|ref|ZP_03302325.1| hypothetical protein BACDOR_03723 [Bacteroides dorei DSM 17855]
 gi|212663263|gb|EEB23837.1| hypothetical protein BACDOR_03723 [Bacteroides dorei DSM 17855]
          Length = 229

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 88/237 (37%), Gaps = 29/237 (12%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +++   +   +L+ +K  L    +  +  E+    +   K   +  + L +++ L L   
Sbjct: 5   KRMMGTTANNNLTKLKCILAIAYEDGLLKENIAKKLVRAKAHGNKRQFLTKEELLQL--- 61

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----MDDQSTLRIQGKGDK 196
                S      D    A L+     GLR+S+ + L  +NI            I  K   
Sbjct: 62  -----SQTPCKSDVLRRAGLFSCL-TGLRLSDCIRLQWENIVKLADGGWGMDIITKKTST 115

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
             I+P+     +   E                +F+      L       Y++   +  G+
Sbjct: 116 AAILPISEEALQLCGE-----------RGTGQVFKN-----LTNSTVALYLKPWIKASGI 159

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
               T H  RH+FAT  L+ G D+ ++  +L H  L+TTQ+Y +V  +   D    I
Sbjct: 160 EKHITFHCFRHTFATLQLAEGTDIYTVSKLLTHSNLATTQVYADVVDELKRDAAERI 216


>gi|254713770|ref|ZP_05175581.1| Phage integrase [Brucella ceti M644/93/1]
 gi|254717173|ref|ZP_05178984.1| Phage integrase [Brucella ceti M13/05/1]
 gi|261218989|ref|ZP_05933270.1| phage integrase [Brucella ceti M13/05/1]
 gi|261321511|ref|ZP_05960708.1| phage integrase [Brucella ceti M644/93/1]
 gi|260924078|gb|EEX90646.1| phage integrase [Brucella ceti M13/05/1]
 gi|261294201|gb|EEX97697.1| phage integrase [Brucella ceti M644/93/1]
          Length = 308

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 105/276 (38%), Gaps = 31/276 (11%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97
           S++ + R FL  +    +E +         +  + + I   R +   + ++ R ++ +  
Sbjct: 57  SHKYNVRSFLGEI----DEILKGARFSGFDHEMLDSIIGTLRERGNSNATINRKMAALSK 112

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
            L+  K  K+    N+      K+     R L +++   L   +                
Sbjct: 113 LLR--KAHKMGDIFNLPEFIRQKERVGRIRFLEQEEEKRLFAAIKSRCEDS--------Y 162

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            +   L   G R+ EA+ LT  +I + + T  +  K ++ R VPL    RKA        
Sbjct: 163 RLSVFLVDTGCRLGEAIGLTWNDIQEQRVTFWV-TKSNRSRTVPLTRRARKA-------- 213

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLS 275
                  ++ P         LN   F++   + +  +GL        H LRH+ A+ L+ 
Sbjct: 214 SHIPRERLKGPF------SMLNQVRFRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVR 267

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            G D+R +Q  LGH  L  T  Y ++ + +    + 
Sbjct: 268 GGIDIRRVQMWLGHQTLQMTMRYAHLATHDLDSCVK 303


>gi|195939942|ref|ZP_03085324.1| putative integrase [Escherichia coli O157:H7 str. EC4024]
          Length = 291

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 90/233 (38%), Gaps = 29/233 (12%)

Query: 80  TQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            +K+ + ++ R  S + + F +  +  + + E+ +  +R  ++       L   +   L+
Sbjct: 79  KKKLSEATVNREQSYLHAVFAELKRLGEWSGENPLTGIRKFREEEKELAFLYVDEIERLL 138

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                  + +          ++ +    G R SEA  L    ++  + T  ++ KG K R
Sbjct: 139 IACDESRNKDLG-------VVVRIGLATGARWSEAEGLKQSQVLPGRITF-VKTKGKKNR 190

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            VP+ P ++  +               +  LF            F   I+  R  + LP 
Sbjct: 191 TVPISPQLQAML------------PKKRGALFSPCYE------AFDAAIK--RAKIELPD 230

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               H LRH+FA+H +  GG++  +Q ILGH  +  T  Y +    +    + 
Sbjct: 231 GQLTHVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAHFAPGHLEAAVE 283


>gi|254228199|ref|ZP_04921628.1| Integrase [Vibrio sp. Ex25]
 gi|262394055|ref|YP_003285909.1| integrase [Vibrio sp. Ex25]
 gi|151939272|gb|EDN58101.1| Integrase [Vibrio sp. Ex25]
 gi|262337649|gb|ACY51444.1| integrase [Vibrio sp. Ex25]
          Length = 401

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/309 (17%), Positives = 123/309 (39%), Gaps = 35/309 (11%)

Query: 25  LEIERGLSKLTLQSYECDTRQF------LIFLAFYTE-EKITIQTIRQLSYTEIRAFISK 77
           L +ER L +     YE   +          F+   +  + +  + + +++  +++ ++S+
Sbjct: 101 LTLERFLDEH----YESYLQALNPKTAKQSFMCIKSSFKHLAHKPMSEITAWDVQQWVSE 156

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +R       ++  + + +K+      +        + +++ +K+ +   R L+  +   L
Sbjct: 157 KRKLGRASSTISYAYNRLKAAFNRAVEWDFIDSHTLSSVKIVKEDDQRIRYLSTAEETAL 216

Query: 138 VD-----------NVLLHTSHETKWIDARNSA--ILYLLYGCGLRISEALSLTPQNIMDD 184
           +D           N       E   +   +    ++ +    G+R  E LSL  ++I  +
Sbjct: 217 LDSLKVRDIRLRENQKQAHRQEVPKLRYADYLEPLIVMAINTGMRKGEMLSLCWEHINFE 276

Query: 185 QSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
              L I     K  K R +PL  +V   + ++        N + +  L     GKP++  
Sbjct: 277 NRYLTITSANAKSKKRRTIPLNDTVFSMLNDW-----KAQNYSEESGLVFTSNGKPID-- 329

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            +Q    QL +   +  +   H L H FA+ L+    DL +++ +LGH  L  T  Y ++
Sbjct: 330 TYQYQWEQLLKDANIQ-NFRFHDLCHHFASKLVMAAVDLNTVRELLGHADLKMTLRYAHL 388

Query: 302 NSKNGGDWM 310
             ++    +
Sbjct: 389 APEHKASAV 397


>gi|218263866|ref|ZP_03477835.1| hypothetical protein PRABACTJOHN_03525 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222465|gb|EEC95115.1| hypothetical protein PRABACTJOHN_03525 [Parabacteroides johnsonii
           DSM 18315]
          Length = 354

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 64/310 (20%), Positives = 120/310 (38%), Gaps = 38/310 (12%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           F+  K + ++L+     + L K   +          +  + +   K T + I      + 
Sbjct: 69  FDKYKLKADFLEYYR--KQLRKHDQKW-----EFVYLHFSNFVHGKCTFEEIDIDLCNKF 121

Query: 72  RAFISK----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
           R ++      RR  +I   S     S  + FLK L +  +   +    +  ++  + +  
Sbjct: 122 REYLLSAKKLRRNGRITRNSASGYWSTFRGFLKILYRNGMIKTNVNDFLEKIETEDVMKE 181

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD---- 183
           AL+ ++   L +        +T         +   +    LRIS+ LSL  ++I+D    
Sbjct: 182 ALSVEELYKLAETPCKKPILKTAS-------LFSCM--TSLRISDILSLCWEDIVDYSAG 232

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
            +    I  K     I+P+       I           N   +  +F+G     L     
Sbjct: 233 GKCVHIITQKNKAEDIIPISEEALGLI---------GYNSEKKGFVFKG-----LMRSWT 278

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           Q  +++  R  G+  + T H+ R +FAT   + G D+R+IQSI+ H  ++TTQ Y  V  
Sbjct: 279 QIPMKEWIRSAGITKNITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVD 338

Query: 304 KNGGDWMMEI 313
            N  +   +I
Sbjct: 339 ANKREASKKI 348


>gi|170697418|ref|ZP_02888509.1| integrase family protein [Burkholderia ambifaria IOP40-10]
 gi|170137597|gb|EDT05834.1| integrase family protein [Burkholderia ambifaria IOP40-10]
          Length = 609

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 65/389 (16%), Positives = 129/389 (33%), Gaps = 86/389 (22%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + +   L   + +L   +        T + Y+ +  + +++     E  + + ++R    
Sbjct: 231 LTAPHDLDAVRAYLHRYDDR----PATQRVYKKELERLVLWC--VAERGVALSSMRVEDC 284

Query: 69  TEIRAFISKRRTQ-------------------KIGDRSLKRSLSGIKSFLKYLKKRKITT 109
              +AF++    +                    +   S + ++  I++   +L   +   
Sbjct: 285 EAYKAFLAAPSERFTGPPGARTSGRWRPFAPGGLAPESQRYAIRTIRAAFTWLVAVRYLA 344

Query: 110 ESN---------ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
            +          +  +R L+   +LP AL  +  +TL +   L +    +W  A   A+L
Sbjct: 345 GNPWQAVTDPSVVRRVRKLQVERALPLALWTRVRVTLAERGELQSPSGPRWRAA--RALL 402

Query: 161 YLLYGCGLRI--------SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
            ++   GLRI        +    L   +       L + GKG+K R VP+      A+  
Sbjct: 403 LIMGDGGLRIAEAAAAERATLHWLPADDDAPASWLLEVIGKGNKQRFVPISDECVDALRA 462

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY-------------------------I 247
           ++     D +              P  P   +++                         +
Sbjct: 463 HWRDRALDFDAADSAGPLVAPLILPPTPRAREKFGVEVDANTEGKPTKPGGYSVRGARGL 522

Query: 248 RQLRRYLGLPL-------------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            Q      L +             ST+ H  RH+  T +L+ G  L  +Q  LGH  L T
Sbjct: 523 TQWAIAQLLDVMPDLSEAERRKLASTSPHAFRHTVGTQMLAAGVALEVVQRTLGHASLGT 582

Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
           T IY  V+ +     M     + H  + Q
Sbjct: 583 TSIY--VSPEEAR--MRREAAKYHARLKQ 607


>gi|323702859|ref|ZP_08114517.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
 gi|323532117|gb|EGB21998.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
          Length = 320

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 99/250 (39%), Gaps = 29/250 (11%)

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
            D +  + +  +  F  +L        S IL +    KS   P   + ++   + +    
Sbjct: 66  SDSTCYKRVMYLIQFSSFLNDSGY--PSYILRLPKAYKSTFTPYIFSREEMKAIFE---- 119

Query: 144 HTSHETKWIDARNSA------ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDK 196
             S   K  ++ +SA      IL +LYG G+RI EA+SL  +++   +  + I+  K   
Sbjct: 120 -ASDRLKIDNSMDSAVNVIPAILRMLYGTGIRIGEAVSLKVKDVNLTEKYIIIRQSKNGM 178

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R++P   S+     +Y +        + +   F    G+  NP     + R++    G+
Sbjct: 179 ERMIPFSDSLADVCRQYRNSLQVLQ--DPEDYFFVKRNGRRCNPKGIYEWFRKVLWEAGI 236

Query: 257 P---LSTTA--HTLRHSFATH----LLSNGGDLR----SIQSILGHFRLSTTQIYTNVNS 303
                      H LRH+F+ H    +  +G DL      +   LGH  L  T+ Y  + S
Sbjct: 237 SHGGKRQGPRLHDLRHAFSVHSLTAMAESGLDLYYSLPILSEYLGHQSLEATEKYVRLTS 296

Query: 304 KNGGDWMMEI 313
           +     + ++
Sbjct: 297 EMYPGLIHDV 306


>gi|198275454|ref|ZP_03207985.1| hypothetical protein BACPLE_01619 [Bacteroides plebeius DSM 17135]
 gi|255008845|ref|ZP_05280971.1| site-specific recombinase [Bacteroides fragilis 3_1_12]
 gi|198271083|gb|EDY95353.1| hypothetical protein BACPLE_01619 [Bacteroides plebeius DSM 17135]
          Length = 406

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/294 (18%), Positives = 114/294 (38%), Gaps = 23/294 (7%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD--R 86
           +  ++ T+  YE   R    F++     K+    ++ ++Y  I  F    + QK      
Sbjct: 129 KEYAEGTVLRYERTARYLKEFISEQY--KLADIPLKSINYEFITKFEHFIKIQKNCAQNA 186

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++K  L  +K  +K    +K  T+     +   K++      LNE +   +++       
Sbjct: 187 TVK-YLKNLKKIIKTALIKKWITDDPFAEIH-FKQTKCNREFLNEMELRKIINKDFDIQR 244

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRIQGKGDKIRIVPLL 203
            +T         I       GL  ++  +L  ++     + +  +R   +         L
Sbjct: 245 LQTV------RDIFIFCCFTGLAFTDVKNLKKEHLVQADNGEWWIRKAREKTDNMCDIPL 298

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
             + + ILE Y   P      + LP+    R           Y++++    G+  + + H
Sbjct: 299 LDIPRLILEKYQSNPICNEKGLLLPVPSNQRM--------NSYLKEIADVCGIQKNLSTH 350

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
             RH+FA+  ++N   L SI  +LGH  + TT+IY  + +    + M  + ++ 
Sbjct: 351 IARHTFASLAIANKVSLESIAKMLGHTDIRTTRIYAKIMNSTIANEMKVLQNKF 404


>gi|160945568|ref|ZP_02092794.1| hypothetical protein FAEPRAM212_03097 [Faecalibacterium prausnitzii
           M21/2]
 gi|313113644|ref|ZP_07799225.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
 gi|158443299|gb|EDP20304.1| hypothetical protein FAEPRAM212_03097 [Faecalibacterium prausnitzii
           M21/2]
 gi|310624012|gb|EFQ07386.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
          Length = 342

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/305 (19%), Positives = 113/305 (37%), Gaps = 28/305 (9%)

Query: 18  RQNWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
            ++W      E     ++  T +SY+   +          +E    + +  +   +I  F
Sbjct: 47  FEDWADT-WFEGHKDNIAPTTQESYKYCLKML--------KEGFYHRPLTVIRPIDIENF 97

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +   R     D  + ++   +    +  +   +   + +     ++ S +  R    K+A
Sbjct: 98  LKGMRRDGRSDSYISKARGMLYQIFQKAEANDLVRRNPVRLAEKMRASGTAKR----KEA 153

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-- 192
            T  +   L        +       + LL G G+R+ E L+L PQ I +D S + I+   
Sbjct: 154 FTTAEVAHLMKVLPDDRMGLS----IRLLLGTGMRMQELLALEPQFIEEDGSVIHIRQAV 209

Query: 193 ---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK---PLNPGVFQRY 246
              KG      P      + I    ++ P  + L      F     K   P NP  F+  
Sbjct: 210 KVVKGTVSIGSPKSKDSIRDIPVPLNVRPCAIKLRDTTDQFIWESPKTGLPCNPTHFRDV 269

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
            R+     G     T H+ RH++ + + + G D+++IQSI+GH     T+ Y +V     
Sbjct: 270 FRKSLEEAGDVRLLTPHSCRHTYVSQMQALGVDIQTIQSIVGHADTEMTEHYLHVQESIR 329

Query: 307 GDWMM 311
              + 
Sbjct: 330 QSAIQ 334


>gi|89147671|gb|ABD62694.1| integrase [uncultured bacterium]
          Length = 163

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/91 (40%), Positives = 51/91 (56%)

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            E+     F      Q P    +R   L+  V QR ++   R  G+    + HTLRHSFA
Sbjct: 72  KEWRWQYVFPAKNRSQDPETGLVRRHHLDESVPQRAVKDAARAAGIIKRVSCHTLRHSFA 131

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           THLL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 132 THLLESGYDIRTVQELLGHSDVSTTMIYTHV 162


>gi|170769173|ref|ZP_02903626.1| site-specific recombinase, phage integrase family [Escherichia
           albertii TW07627]
 gi|191167584|ref|ZP_03029395.1| site-specific recombinase, phage integrase family [Escherichia coli
           B7A]
 gi|300926544|ref|ZP_07142332.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|170121825|gb|EDS90756.1| site-specific recombinase, phage integrase family [Escherichia
           albertii TW07627]
 gi|190902345|gb|EDV62083.1| site-specific recombinase, phage integrase family [Escherichia coli
           B7A]
 gi|294492327|gb|ADE91083.1| site-specific recombinase, phage integrase family [Escherichia coli
           IHE3034]
 gi|300417435|gb|EFK00746.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|315296162|gb|EFU55470.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 16-3]
 gi|324116116|gb|EGC10040.1| phage integrase [Escherichia coli E1167]
          Length = 331

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 100/273 (36%), Gaps = 34/273 (12%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-F 98
             D  +  +        ++ +    QL+   I  +        +   S+ R L+ +   F
Sbjct: 78  RGDIERGRLTTIIAKFAEMGVSRADQLTKKTITDYRVVMMNDGLKPASVNRHLAIMSGMF 137

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
            K +   +  + +    ++ L+++ +    L+ ++   L+  +     + T         
Sbjct: 138 TKLIDAGEYHSHNPFREVKRLREAVTEMAFLSSEEITRLLSMLDGDELNAT--------- 188

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
              +    G R SE  +L  ++I++   T  ++ K  K R +P+   + K I        
Sbjct: 189 --LVCLSTGGRWSEVSNLKAEHIINQMVTF-MKTKNGKRRTIPVSQDLIKRI-------- 237

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR-YLGLPLSTTAHTLRHSFATHLLSNG 277
                       +      L    + +    LR     LP     H LRH+FATH + NG
Sbjct: 238 ------------KTKNSGRLFNASYYKVRNALREVKPDLPDGQAVHVLRHTFATHFIMNG 285

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           G++ ++Q ILGH  +  T  Y +       D +
Sbjct: 286 GNIITLQRILGHSNIQQTMTYAHFAPDFLQDAV 318


>gi|283851773|ref|ZP_06369051.1| integrase family protein [Desulfovibrio sp. FW1012B]
 gi|283572893|gb|EFC20875.1| integrase family protein [Desulfovibrio sp. FW1012B]
          Length = 395

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 108/298 (36%), Gaps = 31/298 (10%)

Query: 22  LQNLEIERGLSKLTLQSYE--CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           L  L  E   +    +++    D  +F  ++     EK       ++   ++    S+  
Sbjct: 94  LAKLWTE--YASHKPENHALSTDRSRFETYIKPAFGEK----EPAEVLTLDLDRMRSRLL 147

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN--MRNLKKSNSLPRALNEKQALTL 137
            Q    +++K  L+  K  +++  K+ +    +     +   +  N     L+  +   L
Sbjct: 148 KQGKSPQTVKHVLALFKRLVRFGVKKGLCDSPDPRKQTISMPRVDNETTEDLDADELARL 207

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           V  +    + +           + L    G+R  E   L  +++  ++  + I+      
Sbjct: 208 VQAIEDEPNIQAAN-------FMRLAMFTGMRRGELFKLEWRDVDFERGFIHIRHPKGGK 260

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
                L    +A+L  +        +     +F G  GK       Q    +++    LP
Sbjct: 261 SQKIPLNDAARAVLASHPH------VENSPYVFPGQGGKQ--RVTIQVASNRIKARASLP 312

Query: 258 LSTTA-HTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                 H LRH FA+ L S+G  DL ++Q +L H   + T+ Y+++      D + + 
Sbjct: 313 ADFRPLHGLRHLFASTLASSGQVDLLTLQKLLTHKSPNMTKRYSHL----RDDALKQA 366


>gi|332877744|ref|ZP_08445485.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332684324|gb|EGJ57180.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 411

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/313 (17%), Positives = 109/313 (34%), Gaps = 31/313 (9%)

Query: 9   IVSFELLKERQNWLQN--LEIERG-LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           ++   LLK  + + ++  L +E+G  S  TL  Y+        F+ +   +  +  + ++
Sbjct: 108 VIEDSLLKVYEKFKEDFALMVEKGVRSWRTLNKYKNAYTHLSEFIQYKYRK--SDISFKE 165

Query: 66  LSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L+   I  F    R  K +   ++   +  +   ++    + I   +   N  N  +   
Sbjct: 166 LTEDFINEFDFYLRVNKALAQNTIWVYMMPLCKMVEIAIDKGIIHRNPFKNYTNSMEEKD 225

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN---- 180
               L  ++  TL+       S E          +       G    +   L   +    
Sbjct: 226 R-GYLLREEVETLLQYHPKSASIELV------RDLFVFSCFTGFSYIDIKQLKKSHLQSF 278

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
              ++  ++ + K D    V LL    K I +Y               LF        + 
Sbjct: 279 FDGNKWLIKRRQKSDVPCNVRLLDIAEKIIEKY-------EGTTRTEALFPTP-----SN 326

Query: 241 GVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                 I+++ +   +      + H  RH+F T  L+ G  L S+  ++GH  + TTQIY
Sbjct: 327 ANCNLLIKKMMKDCNIIREKPISFHWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIY 386

Query: 299 TNVNSKNGGDWMM 311
             + ++     M 
Sbjct: 387 AKITNEKISKDME 399


>gi|303243202|ref|ZP_07329630.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302589257|gb|EFL59077.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 278

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/276 (21%), Positives = 112/276 (40%), Gaps = 15/276 (5%)

Query: 45  QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK 104
           Q + FL + +     I+ I+ +S   I ++    +       +    L  ++SFL +L  
Sbjct: 7   QVIRFLNYISNN--GIENIKYISADYIISYAKSLKDASYARSTRSGILFTLRSFLSFLHD 64

Query: 105 RKITTESNILNMRNLK---KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
           ++  +E  +  +  +    KS  +P   +E +   ++ +V     +  + I  R+  IL 
Sbjct: 65  KQYISE-PLQGLFPVIFSNKSERIPSYYSEDELKKILLHV-----NRDEIIGKRDYLILL 118

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           L    G+R  +   L  + I  +++T+   Q K      +PL  +V+ A+++Y       
Sbjct: 119 LAIQLGIRAGDIRMLKLEYIHWEKNTIEFTQQKTKNPIQLPLPENVKFAMIDYIKNGRPK 178

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP---LSTTAHTLRHSFATHLLSNG 277
            +L       R      +   VF   I +     G+         H+ RHS A++LL N 
Sbjct: 179 SSLPYIFLRHRAPYDPYVATNVFHDVITRYLIEAGISFSGRKHGLHSARHSLASNLLKNN 238

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                I  ILGH   STT+ Y  ++        +E+
Sbjct: 239 TPYPVITGILGHENTSTTRSYLAIDINQLRSVALEV 274


>gi|167765392|ref|ZP_02437505.1| hypothetical protein BACSTE_03780 [Bacteroides stercoris ATCC
           43183]
 gi|167697020|gb|EDS13599.1| hypothetical protein BACSTE_03780 [Bacteroides stercoris ATCC
           43183]
          Length = 411

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 116/301 (38%), Gaps = 23/301 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISK 77
           +++   +  +R  ++ T + YE   +Q   FL   Y  E I +  +       +  F   
Sbjct: 124 EDFKGRIGTDR--AQSTYKQYEVLNKQLKQFLREEYHVEDIPLTELDLPFIEALNFFF-- 179

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  +K+  R++K  +  +   ++    R+I T S        K      ++L   +   L
Sbjct: 180 RVKRKMKPRTVKARIVLLNKLIRLALHRRIITRSPFDGFELEKTELKN-KSLTNDELDLL 238

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDK 196
           +   L   +            +       GL  ++   L+ ++I+ +D  +L I      
Sbjct: 239 MKTPLKSGTQR------FIRDMFLFSTFTGLAYADLHKLSWKDIITEDDGSLWI----SA 288

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R         K +     +  +   L     +F       ++ G     ++++ R  G+
Sbjct: 289 NRQKSQTVFNVKLLNIPIQIMEYYKGLAPDGKVFPS-----MSLGQVNVGLKRIARNCGI 343

Query: 257 PLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
               + H  R++FA+   LS G  + S+  +LGH  + TTQ Y  +N++  G+ M ++  
Sbjct: 344 NRVLSYHVARYTFASQICLSQGVPIESVSRMLGHKHIQTTQRYARLNNEKIGNDMQQLSA 403

Query: 316 Q 316
           +
Sbjct: 404 R 404


>gi|218695473|ref|YP_002403140.1| Integrase [Escherichia coli 55989]
 gi|218352205|emb|CAU97951.1| Integrase [Escherichia coli 55989]
          Length = 333

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 90/233 (38%), Gaps = 29/233 (12%)

Query: 80  TQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            +K+ + ++ R  S + + F +  +  + + E+ +  +R  ++       L   +   L+
Sbjct: 121 KKKLSEATVNREQSYLHAVFAELKRLGEWSGENPLTGIRKFREEEKELAFLYVDEIERLL 180

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                  + +          ++ +    G R SEA  L    ++  + T  ++ KG K R
Sbjct: 181 IACDESRNKDLG-------VVVRIGLATGARWSEAEGLKQSQVLPGRITF-VKTKGKKNR 232

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            VP+ P ++  +               +  LF            F   I+  R  + LP 
Sbjct: 233 TVPISPQLQAIL------------PKKRGALFSPCYE------AFDAAIK--RAKIELPD 272

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               H LRH+FA+H +  GG++  +Q ILGH  +  T  Y +    +    + 
Sbjct: 273 GQLTHVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAHFAPGHLEAAVE 325


>gi|160884941|ref|ZP_02065944.1| hypothetical protein BACOVA_02932 [Bacteroides ovatus ATCC 8483]
 gi|156109291|gb|EDO11036.1| hypothetical protein BACOVA_02932 [Bacteroides ovatus ATCC 8483]
          Length = 411

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/298 (18%), Positives = 113/298 (37%), Gaps = 30/298 (10%)

Query: 31  LSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSL 88
            + +T+  Y+   ++    +  FY +E IT     +L+   I+AF    +T+  +   ++
Sbjct: 129 YAPVTINRYKNVLKKLENSIPTFYDKEDITFH---ELTPEFIKAFDLHLKTEVGLCRNTI 185

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R +   K        +    +      + +++  + P  L   +  T+++         
Sbjct: 186 VRYMKCFKKITNMALAKGWMKKDAFYGYK-MEQDETAPVFLTYDELQTVMNKEF------ 238

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP---- 204
           T    A    I       GL   +  +L  ++++ D +      KG    +         
Sbjct: 239 TIPRLALVRDIFIFACFTGLAFVDVSTLKKEDMVQDNNGDWWIRKGRIKLMHRRKASSIC 298

Query: 205 -----SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
                 V  AIL+ Y+  P  +     LP+    +           Y++++  + G+  +
Sbjct: 299 NIPLLPVPLAILKKYENNPVCIKKGYCLPVPCNQKM--------NSYLKEIADFCGIKKN 350

Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            T H  RH+F T + L+N   L+ +  +LGH     TQ Y  V + +    M+ + +Q
Sbjct: 351 ITTHVARHTFGTTITLANNVPLQDVSVMLGHASTRMTQHYARVMNASLKKSMIHVKEQ 408


>gi|89147334|gb|ABD62529.1| integrase [uncultured bacterium]
          Length = 163

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/111 (33%), Positives = 53/111 (47%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            G G       L      A  E+Y    F    +   P  + +R   L+    Q+ +R+ 
Sbjct: 52  NGYGMVELPYALARKYPNANWEWYWQYIFPSEKHSVDPRSKVVRRHHLDESGLQKAVRRA 111

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              +G+    T H  RH FATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 112 ATEVGITKHVTPHIFRHCFATHLLEAGYDIRTVQELLGHKDVKTTQIYTHV 162


>gi|194436337|ref|ZP_03068439.1| integrase [Escherichia coli 101-1]
 gi|283787274|ref|YP_003367139.1| phage integrase [Citrobacter rodentium ICC168]
 gi|194425065|gb|EDX41050.1| integrase [Escherichia coli 101-1]
 gi|282950728|emb|CBG90404.1| phage integrase [Citrobacter rodentium ICC168]
          Length = 334

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/275 (20%), Positives = 104/275 (37%), Gaps = 40/275 (14%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
           E D +Q    +     +   +     L   +I A+ S++    +   S  R ++ +    
Sbjct: 80  EEDRKQLCNIINELGADMQAV----DLDKLKIIAWRSQKIAAGLKPSSANRYMNRLSGMF 135

Query: 100 KYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
             LK+  +   E  +  +  L  S      L++K+   L+D            ++     
Sbjct: 136 TVLKRIGLWDAEHPVRGISILYVSPREMAFLSQKEVALLLDT-----------LEGDYWR 184

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +  L    G R SEA  L  + I+ ++ T  ++ K  + R VP+  +V +AI        
Sbjct: 185 VALLCLSTGARWSEACKLRGEQIVHNRVTF-LETKNGRKRTVPISQAVCEAIRTRETGNL 243

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL--GLPLSTTAHTLRHSFATHLLSN 276
           F++                       R      + +   LP    AH LRH+FA+H + N
Sbjct: 244 FEVK---------------------YREFCLALKRVKPDLPKGQAAHVLRHTFASHFVMN 282

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           GG++ ++Q ILGH  +  T  Y +       D + 
Sbjct: 283 GGNIIALQKILGHATIQQTMAYAHFAPDYLQDAVA 317


>gi|315441509|ref|YP_004074386.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315265164|gb|ADU01905.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
          Length = 407

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 62/350 (17%), Positives = 114/350 (32%), Gaps = 68/350 (19%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR- 79
           WL +L      S  TL++Y  D   +  FL           +  Q +  E+R ++   R 
Sbjct: 47  WLADLFACDN-SPATLRAYAYDLLSWSRFLGALQ------VSWTQATRGEVRDWVRWYRC 99

Query: 80  -------------------------------TQKIGDRSLKRSLSGIKSFLKYLKKRKIT 108
                                                 S+ R LS +  F ++  +  + 
Sbjct: 100 RANPQRRRGSSADTHRPTPGSVNERTGKAYLESSYARSSMNRRLSSLSGFYEFALESDLG 159

Query: 109 T-ESNILNMR--------------NLKKSNSLP--RALNEKQALTLVDNVLLHTSHETKW 151
              + +   R              N +     P  + L E+    L D   L+       
Sbjct: 160 PLINPVPKSRDDLTRLDVHRQHFDNPRPQKRAPYRQKLVERAPRALSD--DLYEEVFASL 217

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK--IRIVPLLPSVRKA 209
              R+ AI+      GLR SE LS+    +     T  +  KG      +V + P+    
Sbjct: 218 RTNRDRAIVATAISSGLRASELLSMRRGMLHAADQTADVIPKGGNGSRVMVRISPTAYLW 277

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           I  Y    P       + P++  +R   +PL+    ++ +   R    L  + T H  RH
Sbjct: 278 IARYLAERPV---GPPEEPVWLTLRGTPRPLSYWAMRQILE--RSNALLGSNVTMHDFRH 332

Query: 268 SFATHLLS-NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +F   L       +  +Q ++ H  +++T  Y         D + + +++
Sbjct: 333 TFCMRLAQDENMTIAEMQELMRHASIASTTRYLRPTVAELVDKLDQHWNR 382


>gi|239623222|ref|ZP_04666253.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522188|gb|EEQ62054.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 306

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/320 (16%), Positives = 116/320 (36%), Gaps = 48/320 (15%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+  +++LQ     RG ++ T+ SY    R +                 + ++   ++A+
Sbjct: 11  LEYFRDFLQK----RGSAENTIDSYLTSVRHYHSLY-------------QDVTVEYLQAY 53

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSF---LKYLKKRKITTES------------NILNMRNL 119
                 +     ++   + GI  +   L+    +    +                ++  L
Sbjct: 54  KVWLM-EHYKPNTVNTRIYGINQYVIALQEAAGKGRENDGDGMDGGECGCDIPPCSISLL 112

Query: 120 KKSNSLPRALNEKQ-----ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
                LP   ++++      ++  D   L    +          ++  L   G R+SE +
Sbjct: 113 -SPYKLPSVKHQQKPFLNNIISKRDYERLKRCLKRDGNMFW-YFVVRFLGATGARVSELV 170

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
            +  ++I      + +  KG K+R +     +   +L +  L            +F   +
Sbjct: 171 QIKAEHIQI--GCMDLYSKGGKVRRIYFPEKLCGEMLSWLALRGIR-----SGFVFTNRQ 223

Query: 235 GKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           G  + P      ++ L R+  + P +   H+ RH FA + LS   D+  +  ++GH  + 
Sbjct: 224 GNQITPRGISSQLKVLARHYRISPDTVYPHSFRHRFAKNFLSKFNDISLLADLMGHESIE 283

Query: 294 TTQIYTNVNSKNGGDWMMEI 313
           TT+IY   +S      + +I
Sbjct: 284 TTRIYLTRSSDEQRVLIDKI 303


>gi|327312659|ref|YP_004328096.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|326944074|gb|AEA19959.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 407

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 58/320 (18%), Positives = 126/320 (39%), Gaps = 34/320 (10%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF-YTEEKIT 59
           M G  L +  S   L   Q ++         +K  L+  +    +F  FL   Y   + +
Sbjct: 110 MLGYRLKKDRSINFLDYYQAYID------SYTKKDLRMIKIALNRFKDFLKEQYPVYEFS 163

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           I+    ++   ++ F+   +++ +G   +S+ +     K  ++Y    ++  +     + 
Sbjct: 164 IKP-ELITKDMMKHFVEYLQSRSVGEGAKSIYQRF---KKVVRYAIDHEVMQKDPCKGVV 219

Query: 118 NLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
                  L +  L+  +  +L+     + +   +       A +  LY CGLR  +   L
Sbjct: 220 CKVDDQVLRKDVLSMDEIQSLIQCHYENENPNVR------RAFILCLY-CGLRFCDVKDL 272

Query: 177 TPQNIMDDQSTLRI--QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGI 233
           T +N+      L+              ++  +   +L      P DL+ +I  LP +   
Sbjct: 273 TYKNVDYTNRLLKFEQNKTKGHSAHSGVIIPLNDGLLSLIGEAPEDLSSSIFNLPSYESC 332

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
                      + +++  +  G+    + H  RHSFA ++L+NG +++++ S+LGH  L 
Sbjct: 333 S----------KSVKRWVKRAGINKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLK 382

Query: 294 TTQIYTNVNSKNGGDWMMEI 313
            T+ YT    K   + +  +
Sbjct: 383 HTEKYTRAVDKLKSEAINSL 402


>gi|117623084|ref|YP_851997.1| integrase [Escherichia coli APEC O1]
 gi|115512208|gb|ABJ00283.1| Integrase [Escherichia coli APEC O1]
          Length = 331

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 97/256 (37%), Gaps = 34/256 (13%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILN 115
           ++ +    QL+   I  +        +   S+ R L+ +   F K +   +  + +    
Sbjct: 95  EMGVSRADQLTKKTITDYRVVMMNDGLKPASVNRHLAIMSGMFTKLIDAGEYHSHNPFRE 154

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           ++ L+++ +    L+ ++   L+  +     + T            +    G R SE  +
Sbjct: 155 VKRLREAVTEMAFLSSEEITRLLSMLDGDELNAT-----------LVCLSTGGRWSEVSN 203

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           L  ++I++   T  ++ K  K R +P+   + K I                    +    
Sbjct: 204 LKAEHIINQMVTF-MKTKNGKRRTIPVSQDLIKRI--------------------KTKNS 242

Query: 236 KPLNPGVFQRYIRQLRR-YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
             L    + +    LR     LP     H LRH+FATH + NGG++ ++Q ILGH  +  
Sbjct: 243 GRLFNASYYKVRNALREVKPDLPDGQAVHVLRHTFATHFIMNGGNIITLQRILGHSNIQQ 302

Query: 295 TQIYTNVNSKNGGDWM 310
           T  Y +       D +
Sbjct: 303 TMTYAHFAPDFLQDAV 318


>gi|293418008|ref|ZP_06660630.1| hypothetical protein ECDG_02928 [Escherichia coli B185]
 gi|291430726|gb|EFF03724.1| hypothetical protein ECDG_02928 [Escherichia coli B185]
          Length = 334

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 98/248 (39%), Gaps = 32/248 (12%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSN 123
           +L   +I A+ S++  + +   S  R ++ +      LKK  +   E  +  +  L    
Sbjct: 101 ELDKLKIIAWRSQKIAEGLKPSSANRYMNRLSGMFTALKKIGLWDAEHPVRGIPVLYVKQ 160

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
                L++ +   L+D            ++     +  L    G R SEA  L  + I+ 
Sbjct: 161 REMAFLSKNEVTLLLDG-----------LNGDQRRVALLCLCTGARWSEASRLHGEQIVH 209

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           ++ T  ++ K  + R VP+   +  A+        FD+                     F
Sbjct: 210 NRITF-LETKNGRKRTVPVSQEICDAVKTKETGRLFDVKYRE-----------------F 251

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            R ++++     LP    AH LRH+FA+H + NGG++ ++Q ILGH  +  T  Y +   
Sbjct: 252 CRALKKI--KPDLPRGQAAHVLRHTFASHFVMNGGNILALQKILGHATIQQTMAYAHFAP 309

Query: 304 KNGGDWMM 311
               D M 
Sbjct: 310 DYLADAMR 317


>gi|89147347|gb|ABD62534.1| integrase [uncultured bacterium]
          Length = 163

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 37/162 (22%)

Query: 177 TPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILE----------------------- 212
             +++  D  T+ ++ GKG K R + L  S+  ++ E                       
Sbjct: 1   RVKDVDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALP 60

Query: 213 -------------YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
                        +     F  + +   P    +R   +    FQR  ++     G+   
Sbjct: 61  DALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKP 120

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 121 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 162


>gi|310826137|ref|YP_003958494.1| hypothetical protein ELI_0515 [Eubacterium limosum KIST612]
 gi|308737871|gb|ADO35531.1| hypothetical protein ELI_0515 [Eubacterium limosum KIST612]
          Length = 432

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/362 (16%), Positives = 120/362 (33%), Gaps = 86/362 (23%)

Query: 22  LQNLEIER-----GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           L ++ +E       LS  T+ +Y+    +         +  I  + ++ ++   ++A+I 
Sbjct: 68  LLDMWVEEELKPGNLSNGTVMAYQGTVNR-------IKQHPIGNRKLKSVTADHLQAYID 120

Query: 77  KRRTQK-IGDRSLKRSLS--GIKSF-------LKYLKK-RKITTESNILNM--RNLKKSN 123
                    D +  ++LS   ++ F        ++    +++ + + +  +  R  K+  
Sbjct: 121 FLSFGGTNADGTQAKALSKGYLRLFSAVLQGAFRFAVFPKRLISFNPMQYVVWRGKKEEY 180

Query: 124 SLPRALNEKQ-----ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            L    +++        T+     L      K         + + Y  GLRI E   LT 
Sbjct: 181 EL---FSDEDGDVTSVPTISHEQYLKLEDFLKKKYNPALLPIQIAYYTGLRIGEVCGLTW 237

Query: 179 QNIMDDQSTLRIQG----------------KGDKIRIVPLLPSVRKAILE---------- 212
           Q+I  +   L ++                 K  K+R V    ++   +            
Sbjct: 238 QDINLEGQYLTVRRSMRYNGARHKTEIGATKRKKVRTVDFCDTLAAILKTAKAEQHKNRF 297

Query: 213 ------------------------YYDLCPFDLNLNIQLPLFRGIRGKPL--NPGVFQRY 246
                                   Y      ++    +   F  +R      +P      
Sbjct: 298 RYGELYSLNYYSEVKEKDRTYYEVYSLPRTEEVPEGYKEISFVCLRPDGAFESPSTVGIM 357

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKN 305
            R  R+ +        H LRH+F ++LLSNG   + +Q +LGH  +STT  IY +   + 
Sbjct: 358 CRAARKKVEGLEGFHFHQLRHTFTSNLLSNGAAPKDVQELLGHADVSTTMNIYAHATREA 417

Query: 306 GG 307
             
Sbjct: 418 KR 419


>gi|294617989|ref|ZP_06697594.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1679]
 gi|291595798|gb|EFF27086.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1679]
          Length = 381

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 89/247 (36%), Gaps = 27/247 (10%)

Query: 93  SGIKSFLKYLKKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           S +    KY     + T++    +    RN++K     +  +  Q   L   +    S  
Sbjct: 136 STVSRIFKYAMTLGLITKNPCELVIMPNRNVEKKKDTVKIYSRNQLEILFQYLE---SKR 192

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP------- 201
           + +    +  +L  L+  G RISEAL+L   +I  D +T+ I     + +          
Sbjct: 193 STYRADYDKTLLRFLFFSGCRISEALALNWSDIDFDSNTVTINKTLSQTKYGYKISSPKT 252

Query: 202 --------LLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
                   L       + ++          L +     +F GI  + +        +  +
Sbjct: 253 KNSYGSLSLDNKTINWLKKWQINQKRYMLTLGITDPTMIFCGIYKEIITKHAIYSRMITI 312

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDW 309
            +  G+P     H  RH+ A+ LL +G  ++ +Q  L H  +  T   Y ++  +     
Sbjct: 313 CKNSGIPF-LGNHVTRHTHASMLLESGVSMKEVQERLRHSSIKLTMDTYAHLTKETKEKT 371

Query: 310 MMEIYDQ 316
           + ++ + 
Sbjct: 372 VEKLAEH 378


>gi|284097412|ref|ZP_06385523.1| tyrosine recombinase XerD [Candidatus Poribacteria sp. WGA-A3]
 gi|283831070|gb|EFC35069.1| tyrosine recombinase XerD [Candidatus Poribacteria sp. WGA-A3]
          Length = 246

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/182 (28%), Positives = 75/182 (41%), Gaps = 11/182 (6%)

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-------IQGKGDKIRIVP 201
           T   + RN  +  L    G RISE LSLT  ++  +   +        I   G+  R VP
Sbjct: 20  TGMFEIRNRGLFMLGVSTGGRISELLSLTIGDVYQNGRPVTDLLYSKNIVKGGEVSRAVP 79

Query: 202 LLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIR---GKPLNPGVFQRYIRQLRRYLGLP 257
           +    R+A+ +       +        PLF        K L+       ++      GL 
Sbjct: 80  VNRDGRQAVDDLISWHIDYYGMTEADRPLFPSRNGQGQKALSRREAHDVLKVAFEAAGLN 139

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
                H+LR SFA  L    GD+ ++Q +LGH  ++TTQ Y  VN  N  D + +I   T
Sbjct: 140 GHIATHSLRKSFAQRLYEQTGDIFAVQEMLGHQSVATTQKYLGVNYANVRDALEQISVST 199

Query: 318 HP 319
            P
Sbjct: 200 EP 201


>gi|332884384|gb|EGK04648.1| hypothetical protein HMPREF9456_03401 [Dysgonomonas mossii DSM
           22836]
          Length = 324

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/249 (23%), Positives = 107/249 (42%), Gaps = 24/249 (9%)

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNEKQALTLVDNVLLHTSHETKWID 153
           + F +YL          +   RN+K      +P    E +       V  +         
Sbjct: 80  RRFFEYLFTHGY----PVSLFRNVKPPTPNYVPHIYTEDEISKYFVVVDTYKISSLTKHQ 135

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILE 212
            +   +L ++Y CG R++E L +  Q++  D   +R+   KG K R V + PS+R+ + E
Sbjct: 136 IQLPVLLRIMYCCGTRVTETLRIRKQDVDIDNGIIRLMVTKGSKERYVVMSPSLRQLLEE 195

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA------HTLR 266
           Y       L      P+F    G+PL     Q + R++ R  GLP +++       H  R
Sbjct: 196 YAGKTFSTLE--NTDPIFSNRHGQPLTEPTLQSFHRKILRLAGLPAASSTGNTKRLHDWR 253

Query: 267 HSFATH----LLSNGGDLR----SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           H+FA +    ++ NG DL      + + LGH  +  T+ Y  + + +   ++ E +    
Sbjct: 254 HTFAVYAFKQMVENGEDLYVSLPVLSAYLGHKSIMATEYYLRLTA-SLYPYVQEKFTTIL 312

Query: 319 PSITQKDKK 327
            +I +K++K
Sbjct: 313 ENIIEKEEK 321


>gi|326791447|ref|YP_004309268.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326542211|gb|ADZ84070.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 309

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 63/321 (19%), Positives = 128/321 (39%), Gaps = 29/321 (9%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           EI +FE L    +++++ +I + +S  T+  YE        F             + ++ 
Sbjct: 10  EITTFEEL--FLHFIKHCKI-KNVSPKTIIYYETSYNSICKFNPNIQ--------LDEID 58

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
              I+ +I   + Q     S+   L G+++ L Y            + ++ ++    +  
Sbjct: 59  SLLIQDYILYLK-QTNNLNSVNTRLKGLRTMLNYGYS---INALPKIKVQLIRVDKEVKE 114

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
             + +Q LTL+    +    +  + + RN  I++ L   G R+S   ++   ++  D   
Sbjct: 115 TYSTEQILTLIKKPNVK---KCSFAEYRNWMIVHYLVSTGNRLSTLTNIKIGDLDIDNKL 171

Query: 188 LRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           + ++  K    +I+PL   + K ++EY            +  LF  +  K L        
Sbjct: 172 VTLRHTKNRHQQIIPLSSMLCKHLVEYLTYR----EGTSEDYLFPTVENKQLTKDTLITA 227

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           I+   R  G+ + T+ H  R  FA   + NG D  ++Q + G   L+  + Y  + + + 
Sbjct: 228 IKNYNRSRGVNI-TSIHAFRRYFAKQCVLNGIDTFTLQKLGGWKDLTVVKNYIEIYATDI 286

Query: 307 GDWMMEIYDQTHPSITQKDKK 327
            D     YD  +P  T   +K
Sbjct: 287 KD-----YDMINPLDTIYSEK 302


>gi|167765393|ref|ZP_02437506.1| hypothetical protein BACSTE_03781 [Bacteroides stercoris ATCC
           43183]
 gi|167697021|gb|EDS13600.1| hypothetical protein BACSTE_03781 [Bacteroides stercoris ATCC
           43183]
          Length = 412

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 101/285 (35%), Gaps = 27/285 (9%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGI 95
           ++Y    ++FL +     +  +T     Q+ +  I +++   +   +    +   ++  +
Sbjct: 141 RAY-HHLKEFLQY-----KYGVTDIPFTQVDFDFIESYVYYLKINLQFSASTTNNTIKPL 194

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
           +  +     + +  +      R  ++     + L+  +   L+   +   S         
Sbjct: 195 RRIVMRALNKGLMYQDPFFGYR-PQRITITRKWLSMDEIERLMQVEMKRESAN------F 247

Query: 156 NSAILYLLYGCGLRISEALSLT----PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
              +       GL   +  +L      +     Q  +  + K      +PLL    + I 
Sbjct: 248 IRDMFLFSTFTGLAYVDLKNLRHDNIVRQEDGKQWIVLNRQKTGTTSKIPLLDIPLQLIE 307

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           +Y+         +     F G   +          ++++ +   +    T H  RHS+AT
Sbjct: 308 KYW---------DTAFAGFGGRVFRLCTIENTDIQLKKIAKAAKIDKRLTYHMARHSYAT 358

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             LS G  + +I   LGH  ++TTQIY ++      + M  + ++
Sbjct: 359 LCLSMGVPIETISQTLGHRSITTTQIYADITRTKINEDMTNLAER 403


>gi|167772802|ref|ZP_02444855.1| hypothetical protein ANACOL_04184 [Anaerotruncus colihominis DSM
           17241]
 gi|167665280|gb|EDS09410.1| hypothetical protein ANACOL_04184 [Anaerotruncus colihominis DSM
           17241]
          Length = 402

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 61/307 (19%), Positives = 109/307 (35%), Gaps = 50/307 (16%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-------- 82
           L   TL+SYE   R ++          +  + + +++  +I+    K + +         
Sbjct: 87  LRPNTLRSYEQFIRCYIKPY-------LGNKIVSRVTRMDIQKLYRKLKHEGRVREHPEH 139

Query: 83  ---IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              + D  + R  + +   LK  +   +   +        K ++   + L ++Q  T + 
Sbjct: 140 GHELSDTMVLRIHAMLHRCLKDAEAAHVIARNPTDGAVVPKANHRPKQILTKEQMETFLA 199

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--------- 190
            V  +                Y     GLR  E   L  Q+  +   TL+I         
Sbjct: 200 AVERNEIWRD---------FFYTELTTGLRRGEICGLMWQDFDEKAGTLKILRSVNVPKA 250

Query: 191 -------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
                         R + L PS  + + E              L        KP+ P   
Sbjct: 251 GELEIGETKTSQGRRTIRLPPSTVQRLRERKQHAVSQWIFPEPLA-----PEKPVRPSAA 305

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVN 302
             +++++ R  GLP +   H LRH+FATH L++G D +++  ILGH   S T   YT+V 
Sbjct: 306 YYWMKRILREAGLP-TIRFHDLRHTFATHALTSGVDAKTLSGILGHTNASFTLDTYTHVT 364

Query: 303 SKNGGDW 309
                + 
Sbjct: 365 PDMQQEA 371


>gi|167465306|ref|ZP_02330395.1| DNA integration/recombination/invertion protein [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 411

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 63/324 (19%), Positives = 111/324 (34%), Gaps = 50/324 (15%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK---------RRT 80
            LS LT Q+Y       + F+          + +  +    I  FI+          RR 
Sbjct: 95  NLSPLTYQTY-------MHFIESRIIPVFGHKNLEDIRTLHIVTFINDLSKPGVRKDRRD 147

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +   +++     +K+      + ++   + I+ ++  K   +     +E +A  ++  
Sbjct: 148 DTLSPGTIQYIHRVLKNIFNRATEWQLIKTNPIVGVKKPKVEQTEFDFYDEDEAREVI-- 205

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-------- 192
                +   K        IL  + G G R  E L+L   ++  D  TL I          
Sbjct: 206 -----AALNKEPRRWRLFILGSMVG-GFRRGELLALEWADVDFDNMTLSINKSISLTVDG 259

Query: 193 ------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIRGKP 237
                       K         +  ++    E+     F  +      +  +F    GKP
Sbjct: 260 RAVEKDPKSKSSKRVVDMPEWYMQELKVHEREWKKEKLFMGDKWLGGDRQYVFHAGYGKP 319

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
                  ++ R       L      H LRHS AT L+  G  +++IQ  LGH +  TT  
Sbjct: 320 FFHTTPTKWWRSFISRNKL-KYIRLHDLRHSSATLLIEAGAPMKAIQKRLGHSKHQTTAD 378

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPS 320
           IY +V  K   D   E +D+  P+
Sbjct: 379 IYAHVTKKVSRDT-AEKFDKFAPN 401


>gi|315607201|ref|ZP_07882205.1| integrase [Prevotella buccae ATCC 33574]
 gi|315251255|gb|EFU31240.1| integrase [Prevotella buccae ATCC 33574]
          Length = 407

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 58/314 (18%), Positives = 127/314 (40%), Gaps = 30/314 (9%)

Query: 9   IVSFELLKERQ-NWLQNLE-IERGLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQ 65
           ++ + L K+R  N+L   +      +K  L+  +    +F  FL   Y   + +I+    
Sbjct: 110 MLGYRLKKDRNINFLDYYQAYIDSYTKKDLRMIKIALNRFKDFLKEQYPLYEFSIKP-DL 168

Query: 66  LSYTEIRAFISKRRTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           ++   +  F+   +++ +G   +S+ +     K  ++Y    ++  +     +       
Sbjct: 169 ITKDMMEYFVEYLQSRSVGEGAKSIYQRF---KKVVRYAIDHEVMLKDPCKGVVCKVDEQ 225

Query: 124 SLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            L +  L+  +  +L+     + +   +       A +  LY CGLR  +   LT +NI 
Sbjct: 226 ILRKDVLSMDEIQSLIQCHYDNENPNVR------RAFILCLY-CGLRFCDVKDLTYKNID 278

Query: 183 DDQSTLRI--QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLN 239
                L+              ++  +   +L      P DL+ +I  LP +         
Sbjct: 279 YTNHLLKFEQNKTKGHSANSGVVIPLNNGLLSLIGEAPDDLDSSIFNLPSYESCC----- 333

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                + +++  +  G+    + H  RHSFA ++L+NG +++++ S+LGH  L  T+ YT
Sbjct: 334 -----KSVKRWVKRAGINKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYT 388

Query: 300 NVNSKNGGDWMMEI 313
               K   + +  +
Sbjct: 389 RAVDKLKEEAINSL 402


>gi|227543842|ref|ZP_03973891.1| transposon integrase [Lactobacillus reuteri CF48-3A]
 gi|300909102|ref|ZP_07126565.1| phage integrase family site-specific recombinase [Lactobacillus
           reuteri SD2112]
 gi|227186170|gb|EEI66241.1| transposon integrase [Lactobacillus reuteri CF48-3A]
 gi|300894509|gb|EFK87867.1| phage integrase family site-specific recombinase [Lactobacillus
           reuteri SD2112]
          Length = 410

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 66/334 (19%), Positives = 126/334 (37%), Gaps = 59/334 (17%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRS 87
           +GL   T  +Y+     F+          +    IR L  T+IR F +K    + +   S
Sbjct: 83  KGLKSNTFNNYKYMYNHFVR-------NDLGQYKIRTLKVTDIRRFYNKLVDVRGLKVSS 135

Query: 88  LKRSLSGIKSFL----KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
           L      I   L    +    RK  +++ +  ++ ++  +S+PR     +   L  N L 
Sbjct: 136 LDTIQLIIHQVLDLAVQDDLVRKNVSDNGLRELKRMRGIDSIPRKSLTIEQQNLFLNYLQ 195

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK---------- 193
           +T     W          ++ G GLR+ E   L  ++I    + +++             
Sbjct: 196 NTDKYKHWYPT-----FAVMLGTGLRVGELTGLRWEDIDFKNNLIKVNHTLVFYERSKSS 250

Query: 194 -----------GDKIRIVPLLPSVRKAI------LEYYDLCPFDLNLNIQLPLFRGIRGK 236
                          R +P++ +VR+A+      L+   +   D     +  +F    G 
Sbjct: 251 KTGFGINTPKTKAGFRTIPMIKTVREALQKQQTYLQKEQIRSVDNIDGFRDFIFLNRFGH 310

Query: 237 PLNPGVFQRYIRQLRRYLG--------------LPLSTTAHTLRHSFATHLLSNGGDLRS 282
             N G   + ++++ R                 L  + + H LRH+F T L+ +G +++ 
Sbjct: 311 VQNQGPLNKALKRIIRDCNFAELDKNPSINNDCLLPNFSCHVLRHTFTTRLVESGMNVKV 370

Query: 283 IQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYD 315
           IQ++LGH  + TT  IY +V          ++ D
Sbjct: 371 IQNVLGHSDIQTTLNIYADVTRDMKNQQFNQLED 404


>gi|15614927|ref|NP_243230.1| hypothetical protein BH2364 [Bacillus halodurans C-125]
 gi|10174984|dbj|BAB06083.1| BH2364 [Bacillus halodurans C-125]
          Length = 378

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/317 (17%), Positives = 125/317 (39%), Gaps = 28/317 (8%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +  ++    + +L +LE+ +G +  T++ Y  D   F  ++    E++I+++  ++L+  
Sbjct: 54  MDNKMDALIEPFLLSLEM-KGRTAGTVRRYRYDLFDFFHWMQA-EEKEISLKEWKELTPE 111

Query: 70  EIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSL 125
           E+  F ++    +    R+++R  S ++ F  Y + +  T+   I  +            
Sbjct: 112 ELHEFFTELGGKRNYSTRTIRRIHSVLQQFAFYYQPQGATSSHAIHTIDKPDLFVTPLKE 171

Query: 126 PRALNEKQALTL------VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
              + +++  +L      +D +          +  RN  ++ L Y  GL + E  SL+  
Sbjct: 172 NDWVRKEEFESLCETIQSLDGLTERQREVRPKLMKRNLLVVRLFYNYGLSLQEVASLSMI 231

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN--LNIQLPLFRGIRGKP 237
           ++   + T+ +     + R + L  +  +   +Y+   P  +   L+ Q   F     + 
Sbjct: 232 DLQFAKRTVTVAEGKREQRTLSLAEADGRLAFDYWQTIPKPVRPRLHSQDAFFVAFDFQR 291

Query: 238 LNPGV--------------FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                               Q+ +RQ     GL     A  LR+SF    L+NG    +I
Sbjct: 292 KTYRWSYEGDEPKQWTEIGIQKMLRQDASRAGLRKKVCAQHLRNSFILSQLANGTSEETI 351

Query: 284 QSILGHFRLSTTQIYTN 300
           + +LG     + + Y  
Sbjct: 352 RRMLGFTSPLSLRRYVK 368


>gi|15802318|ref|NP_288344.1| integrase for prophage CP-933T [Escherichia coli O157:H7 EDL933]
 gi|15831871|ref|NP_310644.1| integrase [Escherichia coli O157:H7 str. Sakai]
 gi|187776266|ref|ZP_02801548.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4196]
 gi|188024649|ref|ZP_02772961.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4113]
 gi|189404109|ref|ZP_02787302.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4501]
 gi|189406250|ref|ZP_02827228.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC508]
 gi|194430421|ref|ZP_03062905.1| integrase for prophage CP-933T [Escherichia coli B171]
 gi|208810345|ref|ZP_03252221.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816796|ref|ZP_03257916.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819521|ref|ZP_03259841.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4042]
 gi|209395701|ref|YP_002270994.1| integrase family protein [Escherichia coli O157:H7 str. EC4115]
 gi|217328885|ref|ZP_03444966.1| integrase family protein [Escherichia coli O157:H7 str. TW14588]
 gi|254793532|ref|YP_003078369.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           TW14359]
 gi|331683415|ref|ZP_08384016.1| integrase [Escherichia coli H299]
 gi|12515975|gb|AAG56898.1|AE005412_8 integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EDL933]
 gi|13362085|dbj|BAB36040.1| putative integrase [Escherichia coli O157:H7 str. Sakai]
 gi|187768066|gb|EDU31910.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017419|gb|EDU55541.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4113]
 gi|189367364|gb|EDU85780.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4501]
 gi|189375751|gb|EDU94167.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC508]
 gi|194411527|gb|EDX27865.1| integrase for prophage CP-933T [Escherichia coli B171]
 gi|195182940|dbj|BAG66506.1| putative integrase [Escherichia coli O111:H-]
 gi|208724861|gb|EDZ74568.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731139|gb|EDZ79828.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739644|gb|EDZ87326.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157101|gb|ACI34534.1| integrase family protein [Escherichia coli O157:H7 str. EC4115]
 gi|217318232|gb|EEC26659.1| integrase family protein [Escherichia coli O157:H7 str. TW14588]
 gi|254592932|gb|ACT72293.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           TW14359]
 gi|309702157|emb|CBJ01472.1| phage integrase [Escherichia coli ETEC H10407]
 gi|323180706|gb|EFZ66251.1| integrase [Escherichia coli 1180]
 gi|326342290|gb|EGD66071.1| Integrase [Escherichia coli O157:H7 str. 1044]
 gi|326343839|gb|EGD67601.1| Integrase [Escherichia coli O157:H7 str. 1125]
 gi|331079630|gb|EGI50827.1| integrase [Escherichia coli H299]
          Length = 333

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 90/233 (38%), Gaps = 29/233 (12%)

Query: 80  TQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            +K+ + ++ R  S + + F +  +  + + E+ +  +R  ++       L   +   L+
Sbjct: 121 KKKLSEATVNREQSYLHAVFAELKRLGEWSGENPLTGIRKFREEEKELAFLYVDEIERLL 180

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                  + +          ++ +    G R SEA  L    ++  + T  ++ KG K R
Sbjct: 181 IACDESRNKDLG-------VVVRIGLATGARWSEAEGLKQSQVLPGRITF-VKTKGKKNR 232

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            VP+ P ++  +               +  LF            F   I+  R  + LP 
Sbjct: 233 TVPISPQLQAML------------PKKRGALFSPCYE------AFDAAIK--RAKIELPD 272

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               H LRH+FA+H +  GG++  +Q ILGH  +  T  Y +    +    + 
Sbjct: 273 GQLTHVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAHFAPGHLEAAVE 325


>gi|295100875|emb|CBK98420.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 341

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/311 (18%), Positives = 120/311 (38%), Gaps = 29/311 (9%)

Query: 18  RQNWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
            ++W      E     ++  T +SY+   +          +E    + +  +   +I  F
Sbjct: 46  FEDWADT-WFEGHRDNIAPTTQESYKYCLKML--------KEGFYHRPLTVIRPIDIENF 96

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +   R     D  + ++   +    +  +   +   + +     ++ S +  R    K+A
Sbjct: 97  LKGMRRDGRSDSYISKARGMLYQIFQKAEANDLVRRNPVRLAEKMRASGTAKR----KEA 152

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-- 192
            T  +   L        +       + LL G G+R+ E L+L PQ I +D S + I+   
Sbjct: 153 FTTAEVAHLMKVLPDDRMGLS----IRLLLGTGMRMQELLALEPQFIEEDGSVIHIRQAV 208

Query: 193 ---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK---PLNPGVFQRY 246
              KG      P      + I    ++ P  + L      F     K   P NP  F+  
Sbjct: 209 KVVKGTVSIGSPKSKDSIRDIPVPLNVRPCAIKLRDTTDQFIWESPKTGLPCNPTHFRDV 268

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
            R+     G     T H+ RH++ + + + G D+++IQSI+GH     T+ Y +V  ++ 
Sbjct: 269 FRKSLEEAGDVRLLTPHSCRHTYVSQMQALGVDIQTIQSIVGHADTEMTEHYLHV-QESI 327

Query: 307 GDWMMEIYDQT 317
               ++++++ 
Sbjct: 328 RQSAIQLFNEA 338


>gi|226363472|ref|YP_002781254.1| tyrosine recombinase [Rhodococcus opacus B4]
 gi|226241961|dbj|BAH52309.1| putative tyrosine recombinase [Rhodococcus opacus B4]
          Length = 272

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 89/236 (37%), Gaps = 29/236 (12%)

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q     + +     + +F +++      TE+             LPR    K       
Sbjct: 63  RQDWSIETRRGYRGSLLAFYRWMVGSGRATENPAAA---------LPRVAPAKPKPRPAP 113

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQGKGDKI 197
           + +  T+        R   +L L   CGLR +E   +  ++        +L + GKG K 
Sbjct: 114 DSVYATALMKA--TPRERVMLRLASECGLRRAEVALVHSRDLSEDLCGWSLVVHGKGRKD 171

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R++PL   +   +               +   F G     L+P    + + +L     LP
Sbjct: 172 RVLPLPDEIAAELRRL-----------PRGWAFPGNDCGHLSPRWVGKLMTEL-----LP 215

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              T H LRH FAT    N  ++R++Q +LGH  ++TTQ+YT V+       M   
Sbjct: 216 DDWTMHKLRHRFATRAYRNTRNIRAVQQLLGHESVATTQVYTAVDDDELRAAMNAA 271


>gi|257078096|ref|ZP_05572457.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|256986126|gb|EEU73428.1| conserved hypothetical protein [Enterococcus faecalis JH1]
          Length = 376

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/299 (16%), Positives = 105/299 (35%), Gaps = 34/299 (11%)

Query: 42  DTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY 101
           D R+ + F    +E+      +++L+  E +  ++    +     S+K+  + +++ LK 
Sbjct: 85  DIRRAVDF----SEKYFPGTKLKELTRQEYQKALND-YGETHATASVKKHHTYMRAALKD 139

Query: 102 LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
             +  I        ++ +      P+    K         L+H   E       +  I+ 
Sbjct: 140 ALEEGIIHRDPTYRVQAI--GKKNPKHEELKYLNYQESIHLVHKILEGIKPTYTSRFIIL 197

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP----------------- 204
                G R SE + +T   I     T+++    D                          
Sbjct: 198 FGIATGCRFSEIIGMTWDCIDFKNKTVKVNKTWDYKYTNTFSNTKNYQSKRIITIDDDTL 257

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
            + K +  +         L  +  L F     + ++     + +R+  R +G     T H
Sbjct: 258 DLLKKLQLHQKEYYLKSGLRNENNLVFLNDNMELVSNTAVNKVLRKFCRKIG-TKELTCH 316

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGG-------DWMMEIY 314
            LRH+ A+ +L  G +++ +   LGH  + TT Q Y ++  +          + M ++Y
Sbjct: 317 GLRHTHASIMLYKGINIKYVSRRLGHKDIVTTLQTYQHILDEMEQKESNAVNEVMKQMY 375


>gi|256818992|ref|YP_003140271.1| integrase family protein [Capnocytophaga ochracea DSM 7271]
 gi|256580575|gb|ACU91710.1| integrase family protein [Capnocytophaga ochracea DSM 7271]
          Length = 411

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/313 (17%), Positives = 108/313 (34%), Gaps = 31/313 (9%)

Query: 9   IVSFELLKERQNWLQ--NLEIERG-LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           ++   LLK  +N+ +   L +E+G  S  TL  YE        F+ +      +  + ++
Sbjct: 108 VMEDSLLKVYENFKEGFALMVEKGVRSYSTLNKYENVYTHLSEFIQYKYRR--SDISFKE 165

Query: 66  LSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L+   I  F    R  K +   ++   +  +   ++    + I   +   N  +  +   
Sbjct: 166 LTEDFINDFDFYLRVNKSLTHNTIWVYMMPLCKMVEIAIDKGIIYRNPFKNYISSMEEKD 225

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN---- 180
               L  ++  TL+       S E          +       G    +   L   +    
Sbjct: 226 R-GYLLREEVETLLQYHPKSASAELV------RDLFVFSCFTGFSYIDIKQLKRSHLQSF 278

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
              ++  ++ + K D    V LL    K I +Y               LF        + 
Sbjct: 279 FDGNKWLIKRRQKSDVPCNVRLLDIAEKIIEKY-------EGTTRTEALFPTP-----SN 326

Query: 241 GVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                 I+++ +   +      + H  RH+F T  L+ G  L S+  ++GH  + TTQIY
Sbjct: 327 ANCNLLIKKMMKDCNIIREKPISFHWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIY 386

Query: 299 TNVNSKNGGDWMM 311
             + ++     M 
Sbjct: 387 AKITNEKISKDME 399


>gi|260855846|ref|YP_003229737.1| integrase [Escherichia coli O26:H11 str. 11368]
 gi|257754495|dbj|BAI25997.1| integrase [Escherichia coli O26:H11 str. 11368]
 gi|323152673|gb|EFZ38948.1| integrase [Escherichia coli EPECa14]
          Length = 333

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 90/233 (38%), Gaps = 29/233 (12%)

Query: 80  TQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            +K+ + ++ R  S + + F +  +  + + E+ +  +R  ++       L   +   L+
Sbjct: 121 KKKLSEATVNREQSYLHAVFAELKRLGEWSGENPLTGIRKFREEEKELAFLYVDEIERLL 180

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                  + +          ++ +    G R SEA  L    ++  + T  ++ KG K R
Sbjct: 181 IACDESRNKDLG-------VVVRIGLATGARWSEAEGLKQSQVLPGRITF-VKTKGKKNR 232

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            VP+ P ++  +               +  LF            F   I+  R  + LP 
Sbjct: 233 TVPISPQLQAML------------PQKRGALFSPCYE------AFDAAIK--RAKIELPD 272

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               H LRH+FA+H +  GG++  +Q ILGH  +  T  Y +    +    + 
Sbjct: 273 GQLTHVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAHFAPGHLEAAVE 325


>gi|23501523|ref|NP_697650.1| phage integrase family site specific recombinase [Brucella suis
           1330]
 gi|62289597|ref|YP_221390.1| phage integrase family site specific recombinase [Brucella abortus
           bv. 1 str. 9-941]
 gi|82699526|ref|YP_414100.1| phage integrase [Brucella melitensis biovar Abortus 2308]
 gi|161618609|ref|YP_001592496.1| tyrosine recombinase xerC [Brucella canis ATCC 23365]
 gi|163842909|ref|YP_001627313.1| tyrosine recombinase xerC [Brucella suis ATCC 23445]
 gi|189023854|ref|YP_001934622.1| Phage integrase [Brucella abortus S19]
 gi|254688916|ref|ZP_05152170.1| Phage integrase [Brucella abortus bv. 6 str. 870]
 gi|254693398|ref|ZP_05155226.1| Phage integrase [Brucella abortus bv. 3 str. Tulya]
 gi|254697049|ref|ZP_05158877.1| Phage integrase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254703973|ref|ZP_05165801.1| Phage integrase [Brucella suis bv. 3 str. 686]
 gi|254707651|ref|ZP_05169479.1| Phage integrase [Brucella pinnipedialis M163/99/10]
 gi|254709767|ref|ZP_05171578.1| Phage integrase [Brucella pinnipedialis B2/94]
 gi|254729947|ref|ZP_05188525.1| Phage integrase [Brucella abortus bv. 4 str. 292]
 gi|256031257|ref|ZP_05444871.1| Phage integrase [Brucella pinnipedialis M292/94/1]
 gi|256257164|ref|ZP_05462700.1| Phage integrase [Brucella abortus bv. 9 str. C68]
 gi|256369075|ref|YP_003106583.1| site-specific recombinase, phage integrase family [Brucella microti
           CCM 4915]
 gi|260168393|ref|ZP_05755204.1| site-specific recombinase, phage integrase family protein [Brucella
           sp. F5/99]
 gi|260566779|ref|ZP_05837249.1| phage integrase [Brucella suis bv. 4 str. 40]
 gi|261213648|ref|ZP_05927929.1| phage integrase [Brucella abortus bv. 3 str. Tulya]
 gi|261315145|ref|ZP_05954342.1| phage integrase [Brucella pinnipedialis M163/99/10]
 gi|261317299|ref|ZP_05956496.1| phage integrase [Brucella pinnipedialis B2/94]
 gi|261754625|ref|ZP_05998334.1| phage integrase [Brucella suis bv. 3 str. 686]
 gi|261757854|ref|ZP_06001563.1| phage integrase [Brucella sp. F5/99]
 gi|265988337|ref|ZP_06100894.1| phage integrase [Brucella pinnipedialis M292/94/1]
 gi|297248011|ref|ZP_06931729.1| tyrosine recombinase xerC [Brucella abortus bv. 5 str. B3196]
 gi|23347432|gb|AAN29565.1| site-specific recombinase, phage integrase family [Brucella suis
           1330]
 gi|62195729|gb|AAX74029.1| site-specific recombinase, phage integrase family [Brucella abortus
           bv. 1 str. 9-941]
 gi|82615627|emb|CAJ10614.1| Phage integrase:Phage integrase, N-terminal SAM-like [Brucella
           melitensis biovar Abortus 2308]
 gi|161335420|gb|ABX61725.1| Tyrosine recombinase xerC [Brucella canis ATCC 23365]
 gi|163673632|gb|ABY37743.1| Tyrosine recombinase xerC [Brucella suis ATCC 23445]
 gi|189019426|gb|ACD72148.1| Phage integrase [Brucella abortus S19]
 gi|255999235|gb|ACU47634.1| site-specific recombinase, phage integrase family [Brucella microti
           CCM 4915]
 gi|260156297|gb|EEW91377.1| phage integrase [Brucella suis bv. 4 str. 40]
 gi|260915255|gb|EEX82116.1| phage integrase [Brucella abortus bv. 3 str. Tulya]
 gi|261296522|gb|EEY00019.1| phage integrase [Brucella pinnipedialis B2/94]
 gi|261304171|gb|EEY07668.1| phage integrase [Brucella pinnipedialis M163/99/10]
 gi|261737838|gb|EEY25834.1| phage integrase [Brucella sp. F5/99]
 gi|261744378|gb|EEY32304.1| phage integrase [Brucella suis bv. 3 str. 686]
 gi|264660534|gb|EEZ30795.1| phage integrase [Brucella pinnipedialis M292/94/1]
 gi|297175180|gb|EFH34527.1| tyrosine recombinase xerC [Brucella abortus bv. 5 str. B3196]
          Length = 308

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 104/276 (37%), Gaps = 31/276 (11%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97
           S++ + R FL  +    +E +            + + I   R +   + ++ R ++ +  
Sbjct: 57  SHKYNVRSFLGEI----DEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSK 112

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
            L+  K  K+    N+      K+     R L +++   L   +                
Sbjct: 113 LLR--KAHKMGDIFNLPEFIRQKERVGRIRFLEQEEEKRLFAAIKSRCEDS--------Y 162

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            +   L   G R+ EA+ LT  +I + + T  +  K ++ R VPL    RKA        
Sbjct: 163 RLSVFLVDTGCRLGEAIGLTWNDIQEQRVTFWV-TKSNRSRTVPLTRRARKA-------- 213

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLS 275
                  ++ P         LN   F++   + +  +GL        H LRH+ A+ L+ 
Sbjct: 214 SHIPRERLKGPF------SMLNQVRFRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVR 267

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            G D+R +Q  LGH  L  T  Y ++ + +    + 
Sbjct: 268 GGIDIRRVQMWLGHQTLQMTMRYAHLATHDLDSCVK 303


>gi|298245891|ref|ZP_06969697.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297553372|gb|EFH87237.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 384

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 61/319 (19%), Positives = 123/319 (38%), Gaps = 41/319 (12%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +  ++WL+N+   R L   T  +Y+         L  Y    +    +++L+   ++ 
Sbjct: 69  LGEYLEDWLENVHKGR-LRVGTYVNYKK--------LIKYVIADLGDIWLQKLTPQHVQT 119

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F SK+  + +  + +      +   L+   +  +  ++    +   +  +     L+ +Q
Sbjct: 120 FYSKKLNEGLSSKLINNIHGVLHVALENAVRWGLAPKNVCDLVTPPRIVSREVVPLSVEQ 179

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           A   VD V  H              +L      G+R  E L+L   +I  ++S L +   
Sbjct: 180 ARWFVDRVKKHRLE----------VLLVTAVVTGMRRGELLALRWPDIDFERSRLLVLHS 229

Query: 194 GDKI----------------RIVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGI 233
            D I                R++ L   +   + ++  L         +   +  +F  +
Sbjct: 230 VDFIAGHGYVEGQPKTVAGRRVISLPSFLVDMLKQHRTLQQDARKSAKDWQDRDLVFPNL 289

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           +G  L+P       R++    GLP     H LRHS A+ LL  G +++ IQ +LGH  +S
Sbjct: 290 KGGYLHPAHMGEKFRKILAEAGLP-PIHFHDLRHSAASILLCMGVNIKVIQELLGHSDIS 348

Query: 294 TTQI-YTNVNSKNGGDWMM 311
            T   Y+++      + + 
Sbjct: 349 ITLRTYSHLLPSMQQEVIE 367


>gi|187778276|ref|ZP_02994749.1| hypothetical protein CLOSPO_01868 [Clostridium sporogenes ATCC
           15579]
 gi|187771901|gb|EDU35703.1| hypothetical protein CLOSPO_01868 [Clostridium sporogenes ATCC
           15579]
          Length = 358

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/337 (17%), Positives = 132/337 (39%), Gaps = 57/337 (16%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
            + N  P   +    +    ++++L++ R  S  T+ ++      F         + +  
Sbjct: 56  FKNNIDPSSENITFGEFSDKYIEHLKLYR--SINTILAFNTVLNHF---------KHLDD 104

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMR-N 118
             I +++  +I+  I     + +   ++   +  + +  K  +    +       N++ N
Sbjct: 105 TDISKITTLDIQLVIDNLTKEGLNPNTIHDYVRKLNTIFKAARDEYNLIYNLPTKNIKIN 164

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
             K  +  +ALN      L+            + +++   I+ L   CGLR+ E L L  
Sbjct: 165 ANKKPTNKKALNNHDENKLL----------GDFQNSKYYLIILLALKCGLRLGEILGLKW 214

Query: 179 QNIMDDQSTLRIQGKGDKI------------------RIVPLLPSVRKAILEYYDLCPFD 220
           ++I +  +T+ I  +  +I                  R +P+       + +Y ++    
Sbjct: 215 EDIDEVNNTITINKQWKQIDAGRSIYGYGRVKGKNSNRTIPISQLTLNELKKYKNI---- 270

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
           +N+N ++  F+               +  L +  G     T H LRH++AT L+S+G D 
Sbjct: 271 VNINNRIFSFKNTD-------SVSICLNALLKKEG--YDITIHELRHTYATKLISHGLDF 321

Query: 281 RSIQSILGHFRLSTTQIYTNVNSK---NGGDWMMEIY 314
           +++  +LGH    T + Y++VN        D + +I+
Sbjct: 322 KTVARLLGHTVEQTMRTYSHVNDDMMNKANDLIQKIF 358


>gi|242314481|ref|ZP_04813497.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 1106b]
 gi|254194535|ref|ZP_04900966.1| integrase [Burkholderia pseudomallei S13]
 gi|169651285|gb|EDS83978.1| integrase [Burkholderia pseudomallei S13]
 gi|242137720|gb|EES24122.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 1106b]
          Length = 247

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 106/255 (41%), Gaps = 17/255 (6%)

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKK 121
           R+L   +++ ++S R    + + ++KR L  + + + +++      E  + + ++  L  
Sbjct: 2   RELKRGDVQRYVSARLADGVCESTVKRELRLLSAAINFVRTEHDYPELANPVQSL-GLDG 60

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
             S  R ++  +A  L+       +             + L    G R +E L+L    +
Sbjct: 61  GESRVRWISRSEATALI------LAAGAVARQPHLRNFVRLALSTGCRKNELLALEWHRV 114

Query: 182 MDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
             ++S  R+     K  K R+VPL      A+ +         +      +F    G+ +
Sbjct: 115 DFERSLFRLECEHTKNGKRRLVPLNSGALLALRD--QRDWVARHCAGSEWVFASSSGRRV 172

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             G  Q+         G+  +   H LRH+FA+ L+  G  L  ++ +LGH  ++  + Y
Sbjct: 173 --GNLQKGFVAACARAGIE-NFRIHDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERY 229

Query: 299 TNVNSKNGGDWMMEI 313
            +++  +G + + ++
Sbjct: 230 AHLSPDHGREAVQKL 244


>gi|169627546|ref|YP_001701195.1| putative transposase/integrase [Mycobacterium abscessus ATCC 19977]
 gi|169239513|emb|CAM60541.1| Putative transposase/integrase [Mycobacterium abscessus]
          Length = 433

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/345 (16%), Positives = 109/345 (31%), Gaps = 77/345 (22%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +LQ L  +   S  TL++Y      +   L        T      ++      F++  R
Sbjct: 63  EYLQFLRDD-QASPNTLRAYAAGLAAWWNLLEE------TNTGWTDVTTALFGEFLTYLR 115

Query: 80  TQKI-------------GDRSLKRSLSGIKSFLKYLKKRKITTESNILNM---------- 116
           T  +                S+++  + + SF +Y        ++    +          
Sbjct: 116 TGDLPGTSRIGPPAVWLSAASVQQRAAAVLSFYRYHAHAHNL-DAPYQRLYGTLGKPGRA 174

Query: 117 ----------RNLKKSNSLPRA----------LNEKQALTLVDNVLLHTS---HETKWID 153
                     R ++K   + R           L  +Q  T++D   +             
Sbjct: 175 RYIPLLAGVGRPVRKPRPIYRVRGGNTSRTPVLLPEQVRTILDLCAVQDRSGQWSGSPAA 234

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---------------LRIQGKGDKIR 198
            R+  +  LL   G+R+ EAL+L   ++                     +R++G   +I 
Sbjct: 235 LRDRLLFALLAETGMRMGEALTLRHHDVHIGAGGTPWVEVVPRQDHPAGVRVKGGHRRIY 294

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR------GIRGKPLNPGVFQRYIRQLRR 252
           +   L ++  A + +        ++      F       G    P  P      +R +  
Sbjct: 295 VGDDLEALYSAYVWHLVDTGAHEHVPDLDTHFVFVNLAGGQLYAPTRPETVYAKVRSISH 354

Query: 253 YL--GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                +P   + H +RH+ AT LL +G     +   LGH  + TT
Sbjct: 355 NAKGAVPKDWSPHWMRHTHATALLLSGVPPHVVMRRLGHQDIQTT 399


>gi|167762501|ref|ZP_02434628.1| hypothetical protein BACSTE_00856 [Bacteroides stercoris ATCC
           43183]
 gi|167699607|gb|EDS16186.1| hypothetical protein BACSTE_00856 [Bacteroides stercoris ATCC
           43183]
          Length = 408

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 101/277 (36%), Gaps = 24/277 (8%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           +    +LA   ++ I  + I +      +AF+   R +        R L  +   L    
Sbjct: 139 KYLTDYLASLGKKDIAFEEITEDFGRNYKAFLI--RNKNFSTSQTNRCLCWLNRLLYLAV 196

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
             +I   + + N+   KK+    + +  ++   ++   L     E         A +   
Sbjct: 197 DNEILRTNPVENVEYEKKTAPKHKYVTREEMKRILAMPLNEGRAELGR-----RAFI-FS 250

Query: 164 YGCGLRISEALSLTPQNI---MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           Y  GL  ++   L P +I    + +  +RI + K      +PL P   + +  Y      
Sbjct: 251 YFTGLAYADIKQLHPCHIGTTAEGRRFIRISRKKTGVEAFIPLHPIAEQILALYNT---- 306

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
               ++  P+F        +       IR++   LG     + H  RH F   L+S    
Sbjct: 307 ---TDMHSPVFPLP-----SRDSIWHEIREIGVILGRHDDLSYHQARHGFGVLLISESVS 358

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           + SI  ++GH  +STTQ Y  +  +     M  + ++
Sbjct: 359 IESIAKMMGHSNISTTQGYARITEEKISREMDRLMEK 395


>gi|301022944|ref|ZP_07186759.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 69-1]
 gi|300397285|gb|EFJ80823.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 69-1]
          Length = 331

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 97/256 (37%), Gaps = 34/256 (13%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILN 115
           ++ +    QL+   I  +        +   S+ R L+ +   F K +   +  + +    
Sbjct: 95  EMGVSRADQLTKKTITDYRVVMMNDGLKPASVNRHLAIMSGMFTKLIDAGEYHSHNPFRE 154

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           ++ L+++ +    L+ ++   L+  +     + T            +    G R SE  +
Sbjct: 155 VKRLREAVTEMAFLSSEEITRLLSMLDGDELNAT-----------LVCLSTGGRWSEVSN 203

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           L  ++I++   T  ++ K  K R +P+   + K I                    +    
Sbjct: 204 LKAEHIINQMVTF-MKTKNGKRRTIPVSQDLIKRI--------------------KTKNS 242

Query: 236 KPLNPGVFQRYIRQLRR-YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
             L    + +    LR     LP     H LRH+FATH + NGG++ ++Q ILGH  +  
Sbjct: 243 GRLFNASYYKVRNALREVKPDLPDGQAVHVLRHTFATHFIMNGGNIITLQRILGHSNIQQ 302

Query: 295 TQIYTNVNSKNGGDWM 310
           T  Y +       D +
Sbjct: 303 TMTYAHFAPDFLQDAV 318


>gi|298245438|ref|ZP_06969244.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297552919|gb|EFH86784.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 184

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 12/171 (7%)

Query: 52  FYTEEKITIQTIRQLSYTEIRAFISKRRT------QKIGDRSLKRSLSGIKSFLKYLKKR 105
            Y +  +    +  +   +I  ++S  R       +    R+++     +  F  +L   
Sbjct: 7   RYMKSDLDRVYVADIEEIDIIVWLSHLRDGTNRWGRPYSSRTIETYFRDVLVFFNWLVAH 66

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH------TSHETKWIDARNSAI 159
           K   E+ + ++++ K    L R   E + + L             T  E K + AR+ A 
Sbjct: 67  KHLEENPMADLKSPKTEKPLIRVFTEDELMRLDAACDREPKGRSLTQDERKALAARDRAF 126

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
           L+LL   G+RISEA  L   +I  D   + ++GKG K R VP     R+ +
Sbjct: 127 LWLLLSTGIRISEACGLLFADIDWDMGMIFVRGKGSKERKVPFGKVARQHL 177


>gi|204929529|ref|ZP_03220603.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|204321248|gb|EDZ06448.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 341

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 66/330 (20%), Positives = 116/330 (35%), Gaps = 57/330 (17%)

Query: 8   EIVSFE--LLKER--QNWLQNLEIERGLSK-----LTLQSYECDTRQFLIFLAFYTEEKI 58
           E ++FE   + E   + WL   +  R LS+      +L  Y          ++  +    
Sbjct: 34  EAIAFENFTMDEVNKKPWLGEKDDRRQLSEVIEQWHSL--YGQTLADPKRLMSKLSIICH 91

Query: 59  TIQTI--RQLSYTEIRAFISKRRTQKI-----------GDRSLK---RSLSGIKSFLKYL 102
            +      +L+  +   +   R   ++             R++    R+LS +  F    
Sbjct: 92  GLGDPIASELTAGDFTKYREARLKGEVRSEDGALMSPVKPRTVNLEQRNLSSV--FGTLK 149

Query: 103 KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
           K    +  + +  +   K +      L   +   L+D      S            I  +
Sbjct: 150 KLGHWSAPNPLAGLPTFKIAEGELAFLAPDEIKRLLDACADSQS-------PSLLMITKI 202

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
               G R SEA +L    +   + T   + KG K R VP+   +   I            
Sbjct: 203 CLSTGARWSEAENLQGHQVSKYRITYT-KTKGKKNRTVPISQDLYDEI------------ 249

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
                P  RG    P     F+R I++      LP     H LRH+FA+H + NGG++  
Sbjct: 250 -----PRNRGKLFTPC-RKAFERAIKRAGIE--LPEGQCTHVLRHTFASHFMMNGGNILV 301

Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           ++ ILGH  +  T IY +    +  D + +
Sbjct: 302 LRDILGHADIKMTMIYAHFAPDHLEDAVTK 331


>gi|325686005|gb|EGD28066.1| site-specific tyrosine recombinase XerC [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 247

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 88/250 (35%), Gaps = 31/250 (12%)

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR--ALNEKQALTLVDNVLL 143
           +S  R +      LKY  K  +   +    +   KK     +     + +  T +     
Sbjct: 1   KSFDRMIVWTSKVLKYAFKVGLIDSNPFDRVIVPKKPAKRKKDNFYTKDELETFL----- 55

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK---------- 193
              +  + +      +  LL   G+RI E ++L   ++     ++ I             
Sbjct: 56  ---NGARDVGMMKYTLFRLLAFSGMRIGELIALEWSDVDFASQSVSINKTLTLDKYGQAT 112

Query: 194 ------GDKIRIVPLLPSVRKAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                  +  R V L       + ++   +              +F    G  L+ G  +
Sbjct: 113 VGSPKTTNSNRAVLLDDVTMTILRQWRAEHARRIIYFGKPRNNLVFASEHGGHLSNGTIK 172

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
            + +++    GL  + + H  RH+ A+     G  ++ ++  LGH  +STT  IYT+V +
Sbjct: 173 GWNKKIAENKGL-RAISLHGFRHTHASLCFEAGLTMQDVKERLGHSSISTTVDIYTHVTN 231

Query: 304 KNGGDWMMEI 313
               + + ++
Sbjct: 232 DRKEESVQQL 241


>gi|302879148|ref|YP_003847712.1| integrase family protein [Gallionella capsiferriformans ES-2]
 gi|302581937|gb|ADL55948.1| integrase family protein [Gallionella capsiferriformans ES-2]
          Length = 217

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 72/184 (39%), Gaps = 12/184 (6%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             L E +   L+       + +      R++ ++ L Y  GLR+SE +SL    +   Q 
Sbjct: 42  EYLTEHEVDQLI-----SAAGKVGRHGHRDATLIMLTYRHGLRVSELVSLRWDQVDLRQG 96

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            + I   K     + P+     +A+           +  +   LF   R  PL     ++
Sbjct: 97  LMHINRLKQGNPSVHPIRGPELRAL------RRLQRDYPVLPYLFSSERKAPLTDDAIRK 150

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            + +      LP +   H LRH+    L   G D R+IQ  LGH  +  T  YT ++S  
Sbjct: 151 IVGRAGVEARLPFTVHPHMLRHACGYKLAQAGQDTRAIQHYLGHRNIQHTVRYTQLSSDR 210

Query: 306 GGDW 309
             ++
Sbjct: 211 FKNF 214


>gi|149923694|ref|ZP_01912089.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149815440|gb|EDM74979.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 316

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 61/310 (19%), Positives = 117/310 (37%), Gaps = 35/310 (11%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
            +   R     T++S E      LI        K+    + Q+    ++       +  +
Sbjct: 15  YVRANRQK-PSTIESKESHLNAHLI-------PKLGEMRLDQIDNETVQRLKGSMSS--M 64

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
            ++++   L+ + + LK   + KI  E     +R LK +       +  +   LV     
Sbjct: 65  SNKTVNNVLTTLNTMLKCAVEWKILEEMPA-RIRLLKVTKREAAFFDFDEYERLVAA--- 120

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----------K 193
                   ++     ++ L    G+R  E  +L   ++   +  L I+           K
Sbjct: 121 -----AGKVEPWVQLMVLLGGDAGMRPGEVRALHWTSVDFQRQRLTIERNEHKGSFLLPK 175

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            DKIR VP+  +V +A+  +  L    +           +    ++P   + ++ +  R 
Sbjct: 176 HDKIRRVPMTDAVAQALSAHRHLRGPLVFYRDGGYAAGKV----MSPRYQRYWLDKALRR 231

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             LP     HTLRH+F +HL   G   R+I  + GH  L TTQ Y +++       +  +
Sbjct: 232 ANLP-DLGPHTLRHTFCSHLAMRGAPARAIMELAGHRDLLTTQGYMHLSPAALESSIG-L 289

Query: 314 YDQTHPSITQ 323
            ++  PS  Q
Sbjct: 290 LNRARPSWAQ 299


>gi|32469432|ref|NP_862840.1| gp1 [Streptococcus phage SM1]
 gi|32441584|gb|AAP81883.1| gp1 [Streptococcus phage SM1]
          Length = 375

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/288 (19%), Positives = 112/288 (38%), Gaps = 31/288 (10%)

Query: 51  AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE 110
           A   +E  +   +  +    I++ I      K G  +  R  S +KS   Y  +      
Sbjct: 93  ATMKKEIPSNTLLANIDRRYIQSKIENIIDSK-GYHTAYRVRSRLKSIFDYAVQYSYIEN 151

Query: 111 SNILNMRNLKKSNSLP-------RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           + +      KK  +L        + L  ++   L+D  L +  ++ K+ D     ++ +L
Sbjct: 152 NEVNYTVIPKKPETLEDIEKKRNKFLTMQEIKALIDA-LNNKPYQQKYAD-----MVTVL 205

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY--------- 214
              G+R  E  +L  +NI  + + + I G  D I  +  LP   K+I             
Sbjct: 206 ALTGMRYGELTALQLKNIDFENNKIEITGNFDSINKIKTLPKTAKSIRTILVSDAVIKAI 265

Query: 215 -----DLCPFDLNLNIQLPLF-RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
                 L      L     +F   +   P+    F + I++     G+  + ++H  RHS
Sbjct: 266 QRQVVRLTERYQPLKDDDYIFCLEVWNSPITLPSFIQIIKKYGAKAGIEKNLSSHIFRHS 325

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYD 315
             ++L   G  ++SI   +GH     T +IY++  +++  D +++  D
Sbjct: 326 HISYLAEAGLPIKSIMDRVGHANAKMTLEIYSH-TTQDMEDKLVKTLD 372


>gi|322689216|ref|YP_004208950.1| phage integrase [Bifidobacterium longum subsp. infantis 157F]
 gi|320460552|dbj|BAJ71172.1| putative phage integrase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 391

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 105/282 (37%), Gaps = 30/282 (10%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
              + E K   + I  +++ E++A++     +  G  S+ R    ++       + K+ +
Sbjct: 93  WKCHCEAKWAERQIGSITHAEVQAWVGSIIDKS-GAPSVSRPYQIMQGICSMAVRDKLIS 151

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
            +    +   +      R +       L    L + +   + +     A++ LL  CGLR
Sbjct: 152 SNPCDGIELPRLPKRKDRRIYLTITRLL---ALANEASNCRKLGEERRALILLLGFCGLR 208

Query: 170 ISEALSLTPQNIMDDQSTLRIQG--------------KGDKIRIVPLLPSVRKAILEYYD 215
             EA  L  +++  D   L ++               K  + R VP+   V  A+    +
Sbjct: 209 WGEAAGLQRRDLDFDAGILHVRRNLVYVNAKWAEGTPKNHERRDVPMPRIVMDALKPICE 268

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQR---YIRQLRRYLGLPLS--TTAHTLRHSFA 270
               +        +FR +RG P+      R   +       LG         H LRH+ A
Sbjct: 269 QREHEER------VFRDVRGGPIRKQSLARETGWWTHTLTRLGWKRDDWPVPHDLRHTAA 322

Query: 271 THLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMM 311
           +  +  G +++++Q +LGH   S T  +Y ++   +  D   
Sbjct: 323 SLAVHAGANVKALQRMLGHKNASMTLDVYADLFDSDLMDVAR 364


>gi|189440195|ref|YP_001955276.1| Integrase [Bifidobacterium longum DJO10A]
 gi|189428630|gb|ACD98778.1| Integrase [Bifidobacterium longum DJO10A]
          Length = 400

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 122/298 (40%), Gaps = 19/298 (6%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           L E V   L    + W   L    GL+  T+  Y      FL +L  +      + ++  
Sbjct: 102 LAEPVVPGLAVVMERWEAYLAGS-GLASATVGHYRRMAGLFLTWLESH-----GVVSLDG 155

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
              + +  F++  R++   + S++ + S ++   ++L +  +      + +  +++++++
Sbjct: 156 SDGSHVLGFLAGLRSR-WSESSMRHAASDLRPLFRWLGRDDLAD---AIGLAGIRRTHAI 211

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
              L + +   L++         ++ + +R++AI  L   CGLR  + + L   ++  D 
Sbjct: 212 AGMLPDDEHRRLLEACA------SRSVPSRDAAITLLSLTCGLRACDVIGLRIADVDWDS 265

Query: 186 STL-RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
            ++  +Q K      VP+   +   +  +        + +     ++             
Sbjct: 266 MSIGLVQRKTGNPLTVPMTGPLAARLASWLLDERPATDDDRVFVRYKAPHVALRGHSSVY 325

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY--TN 300
             I ++ R+ GL     +  LR + AT +L     L +I ++LGH    +T++Y  T+
Sbjct: 326 EAISRVMRHAGLGRRGGSRLLRRNAATRMLEAATPLPTISAVLGHADPDSTRVYMATH 383


>gi|149008030|ref|ZP_01831578.1| putative integrase [Streptococcus pneumoniae SP18-BS74]
 gi|147760438|gb|EDK67415.1| putative integrase [Streptococcus pneumoniae SP18-BS74]
          Length = 380

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 98/268 (36%), Gaps = 26/268 (9%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK- 121
           +R +    ++  I +          + +    +   +K+  +      + +L +   +K 
Sbjct: 107 VRNIDRRLLQKVIDQLLQDGRSHNYVSKIKFKLNQIMKFAIRMNYIDTNEMLFVETPRKV 166

Query: 122 ------SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
                      + L++K+    + N+      + +        I  +L+  G+R  E  +
Sbjct: 167 ITSDELRKKNTKYLDQKEFKLFIQNLKDEALCDYRITKYIR--IAKVLFLTGMRYGELAA 224

Query: 176 LTP-QNIMDDQSTLRIQGKGDK-------------IRIVPLLPSVRKAILEYYDLCPFDL 221
           L   ++I   ++T+ I+   D               R++     V   I E   +     
Sbjct: 225 LNYKEDIDFSKNTIHIKHTYDFRQKERTTPKTIKSDRVITAPQKVLDIIKE--QIIENAT 282

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
           N      +F    G+P+        +++  + +G+  + T HT RHS  + L   G  L 
Sbjct: 283 NGFDTDFIFINTLGEPITNARVICALKRHGQKIGIEKNITTHTFRHSHISLLAELGIPLT 342

Query: 282 SIQSILGHFRLSTT-QIYTNVNSKNGGD 308
           +I   +GH    TT +IY++V  K   D
Sbjct: 343 AIMDRVGHSDSKTTLEIYSHVTQKMVSD 370


>gi|331697728|ref|YP_004333967.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|331698613|ref|YP_004334852.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|331699771|ref|YP_004336010.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326952417|gb|AEA26114.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326953302|gb|AEA26999.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326954460|gb|AEA28157.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
          Length = 362

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/311 (18%), Positives = 104/311 (33%), Gaps = 32/311 (10%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
              RG S +T+++   D       L          +   +++  ++   +          
Sbjct: 37  WRARGFSPVTIEN---DFGLLERTLTALG------RPAWEVTPEDVDRVVGDLAIAGRKA 87

Query: 86  RSLKRSLSGIKSFLKYLKKRK--------------ITTESNILNMRNLKKSNSLPRALNE 131
            + +  +   K F ++L+ RK                 E N          +S+P    E
Sbjct: 88  STRRDYVQIFKGFHRFLQVRKAAEIQAWFGVSLVCPVDEFNASRHVGDDSPDSMPPPTPE 147

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TL 188
           +             +       AR+ A+   LY  GLR  EA  L   ++  ++     L
Sbjct: 148 RVGQFFEFLKGRIATARKYAPAARDYALFRTLYHAGLRSEEASLLDVADVHFNRGPFGKL 207

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQ 244
            ++         P    V         L  F  ++  + P    LF    G  L+ G  +
Sbjct: 208 HVRFGKAARTSGPRPRWVPMLDGLDLVLRWFLNDVRGKFPDSPVLFADESGGSLHRGTIR 267

Query: 245 RYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             +R+L    G       + H LR + ATH    G DL +IQ +LGH+ +S+T  Y   +
Sbjct: 268 NRLRRLMELEGRAAGEWFSPHALRRACATHNYERGVDLVAIQQLLGHWTVSSTMRYVRPS 327

Query: 303 SKNGGDWMMEI 313
           +    D     
Sbjct: 328 ATFIEDAYRRA 338


>gi|319954949|ref|YP_004166216.1| integrase family protein [Cellulophaga algicola DSM 14237]
 gi|319423609|gb|ADV50718.1| integrase family protein [Cellulophaga algicola DSM 14237]
          Length = 212

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 75/185 (40%), Gaps = 13/185 (7%)

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
                  L++ +  +L+       + +      RN  +L + Y  GLR+SEA+++   ++
Sbjct: 34  HERPKDFLSDAEIKSLL------AASKKTRYPKRNYLLLLMTYRHGLRVSEAIAIKKSDV 87

Query: 182 MDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
              +S + I   K       P+     +AI  Y +    +L       LF   RG PL  
Sbjct: 88  NIKESRIWINRLKSGLSVEHPISGDELRAIKRYLNSREDNL-----PWLFVNERGLPLTR 142

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                 +  +     L  +   HTLRHS   +L + G DLR IQ  LGH     T  YT 
Sbjct: 143 QAINYIVNVIATAAKLE-NVHPHTLRHSCGFYLANKGYDLRLIQDYLGHRDPKHTAHYTR 201

Query: 301 VNSKN 305
           V SK 
Sbjct: 202 VVSKR 206


>gi|167767651|ref|ZP_02439704.1| hypothetical protein CLOSS21_02184 [Clostridium sp. SS2/1]
 gi|167710668|gb|EDS21247.1| hypothetical protein CLOSS21_02184 [Clostridium sp. SS2/1]
 gi|291560785|emb|CBL39585.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2]
          Length = 397

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 103/298 (34%), Gaps = 34/298 (11%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           +Q    +    E+K+  ++I  +  ++ + +  + + +     ++      +K+      
Sbjct: 104 KQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMKDKGFSYNTINNHKRSLKASFYIAI 163

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           +     ++      N K S  +     EK ALT      L +  +T  +  +    + +L
Sbjct: 164 QDDCVRKNPF----NFKLSEIIENDTKEKVALTEEQEQALLSFIKTDNVYHKYYDDVLIL 219

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQG----------------KGDKIRIVPLLPSVR 207
              GLRISE   LT  +I      + I                       R VPL     
Sbjct: 220 LKTGLRISELCGLTIMDIDFIHEVVVINHQLLKSKEQGYYIETPKTKSGTRQVPLSRETI 279

Query: 208 KAILEYYDLCPFDLNL---NIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGL 256
           +A        P             LF   +GKP        L   + ++Y +  +     
Sbjct: 280 QAFQRVIKKRPKAEPFVIDGRGNFLFVNHKGKPKVAIDYNMLFVRIVKKYNKHHKD--NP 337

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
               T HTLRH+F T L S   + + +Q I+GH  +S T   Y + +       +  +
Sbjct: 338 LPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQRL 395


>gi|111020189|ref|YP_703161.1| transposase B [Rhodococcus jostii RHA1]
 gi|110819719|gb|ABG95003.1| possible transposase B [Rhodococcus jostii RHA1]
          Length = 696

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 65/338 (19%), Positives = 121/338 (35%), Gaps = 33/338 (9%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGL-SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           LPE    ++    + +LQ L ++  L    T+ +     R+F+ +L  +  E  ++  + 
Sbjct: 254 LPEPCPPKIRAVIERYLQ-LRLDAKLDRPQTVHNVRQAMRRFVNWLGVHQPEITSLAQLD 312

Query: 65  QLSYTEIRAFI----SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMR- 117
           + +  E   ++    S+   Q +   ++K  L+ I  F +     +        +L  R 
Sbjct: 313 RATIEEYMRWLPTCPSQHTGQPLSTTTVKHELNAIAGFCRDTAVWEWAEVPGRPLLTSRD 372

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             ++  S+PR L + +   ++  +   +    +                G R  E   LT
Sbjct: 373 TPRRPESIPRYLPQHELDAIMTAIGDLSDPLQRAALLLLRW-------SGARRDEIRRLT 425

Query: 178 PQNIMDDQST---LRIQ-GKGDKIRIVPLLPSVRKAILEYYDL--------CPFDLNLNI 225
              +         LRI  GKG   RIVPL P    A+     L           ++    
Sbjct: 426 WDCLDTYPGGHPRLRIPVGKGHSERIVPLHPDAAAALDHAIGLARAQRSIARIDEVTGRR 485

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-----PLSTTAHTLRHSFATHLLSNGGDL 280
              +F           +F    R +    GL       + +AH LRH+  T L   G  +
Sbjct: 486 VDYVFIRRGKLLSVKTLFDEAFRTVCAATGLVDDRGAPTVSAHRLRHTLGTQLAEGGARI 545

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           ++I +ILGH   + + IY+ ++               H
Sbjct: 546 QTIMAILGHRSATMSMIYSRISDPEIRRQYETALADGH 583


>gi|91782176|ref|YP_557382.1| putative bacteriophage integrase [Burkholderia xenovorans LB400]
 gi|91686130|gb|ABE29330.1| Putative bacteriophage integrase [Burkholderia xenovorans LB400]
          Length = 444

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 98/285 (34%), Gaps = 39/285 (13%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIG------DRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           T+ ++S  ++  +      +++G        S++R L+ ++    +  +    T + +  
Sbjct: 149 TLNRISVQQVLEWAYAELEKEVGEDRIMCPASVRRKLTSLRGLFSHAIRLDFITANPVAE 208

Query: 116 M-----------------RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           +                         L  AL+ ++A     +  + +      +   ++A
Sbjct: 209 VMDDNKALFDEGEGRDQWLRPDMEIRLRAALDAREARLRKSHAQIDSDARCDIVYGPDAA 268

Query: 159 -------ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRK 208
                   + +  G GLR  E + L   ++  D   +R++    KGD+ R VP+   V +
Sbjct: 269 YVDHVKPAVLVALGTGLRRGEQMQLQWPDVDFDNERIRVRKATSKGDRTRYVPMCDEVIQ 328

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            +  +              P+                Y   L     +  S T H LRHS
Sbjct: 329 VLKAWKAQTC----SGPVQPILVFGNALGEVRREIGPYRHVLA-EAKID-SFTWHDLRHS 382

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           FAT L  +G  +  I   LGH  L  T  Y +   +     +  +
Sbjct: 383 FATRLAQHGVPIERIGKWLGHSSLQQTMRYAHHCPEQQRHDIRAL 427


>gi|34335022|gb|AAQ64997.1| unknown [synthetic construct]
 gi|301159296|emb|CBW18811.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|323131081|gb|ADX18511.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 341

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 66/330 (20%), Positives = 116/330 (35%), Gaps = 57/330 (17%)

Query: 8   EIVSFE--LLKER--QNWLQNLEIERGLSK-----LTLQSYECDTRQFLIFLAFYTEEKI 58
           E ++FE   + E   + WL   +  R LS+      +L  Y          ++  +    
Sbjct: 34  EAIAFENFTMDEVNKKPWLGEKDDRRQLSEVIKQWHSL--YGQTLADPKRLMSKLSIICH 91

Query: 59  TIQTI--RQLSYTEIRAFISKRRTQKI-----------GDRSLK---RSLSGIKSFLKYL 102
            +      +L+  +   +   R   ++             R++    R+LS +  F    
Sbjct: 92  GLGDPIASELTAGDFTKYREARLKGEVRSEDGALMSPVKPRTVNLEQRNLSSV--FGTLK 149

Query: 103 KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
           K    +  + +  +   K +      L   +   L+D      S            I  +
Sbjct: 150 KLGHWSAPNPLAGLPTFKIAEGELAFLAPDEIKRLLDACADSQS-------PSLLMITKI 202

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
               G R SEA +L    +   + T   + KG K R VP+   +   I            
Sbjct: 203 CLSTGARWSEAENLQGHQVSKYRITYT-KTKGKKNRTVPISQDLYDEI------------ 249

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
                P  RG    P     F+R I++      LP     H LRH+FA+H + NGG++  
Sbjct: 250 -----PRNRGKLFTPC-RKAFERAIKRAGIE--LPEGQCTHVLRHTFASHFMMNGGNILV 301

Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           ++ ILGH  +  T IY +    +  D + +
Sbjct: 302 LRDILGHADIKMTMIYAHFAPDHLEDAVTK 331


>gi|291515621|emb|CBK64831.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 410

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/315 (18%), Positives = 115/315 (36%), Gaps = 37/315 (11%)

Query: 14  LLKERQNWLQNLEIER----GLSKLTLQSYE---CDTRQFLIFLAFYTEEKITIQTIRQL 66
           LLK  +    N E E+      ++ T   Y       R+FL     Y  E I ++ +   
Sbjct: 109 LLKLFEQ--HNAEFEKKVGHSRAQGTFTRYRTVCNHIREFLPH--TYKREDIPLKELNLT 164

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSL 125
              +   F+  R  +K    ++   +  +K  +   +       +     + + +  +  
Sbjct: 165 FINDFEYFL--RTEKKCRTNTVWGYMIALKHIVSIARNDGRLPFNPFAGYINSPESVDR- 221

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN---IM 182
              L + +  TL+D  + + +HE          +       GL  S+  +LT  +     
Sbjct: 222 -GYLTQTEIQTLMDAPMKNATHELV------RDLFVFSVFTGLAYSDVKNLTTDHLQTFF 274

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           D    +  + K         L  V K I+E Y     D ++               + G 
Sbjct: 275 DGNLWIITRRKKTNTESNIRLLDVPKRIIEKYKGLARDGHVFPVP-----------SNGS 323

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHS-FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             + ++++ R  G  +  T H  RH+   T LLS+G  + ++  +LGH  + TTQIY  +
Sbjct: 324 CNKILKEIGRQCGFKVRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKI 383

Query: 302 NSKNGGDWMMEIYDQ 316
            ++     M  +  +
Sbjct: 384 TAQKISQDMETLSHK 398


>gi|194733804|ref|YP_002112919.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194709306|gb|ACF88529.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
          Length = 159

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 50/94 (53%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 44  RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 103

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 104 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 137


>gi|217961355|ref|YP_002339923.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus cereus AH187]
 gi|217067447|gb|ACJ81697.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus cereus AH187]
          Length = 319

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 114/298 (38%), Gaps = 19/298 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           VS E     +++L   + + G +  TLQ Y  D R  L  L  + E K     + +L+  
Sbjct: 14  VSQENKNLVKDFLIEKKSQ-GKAASTLQQYHWDLRIILFLLHQHFENK----NLIELTRK 68

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRN-LKKSNSLP 126
           +IR      +   + +  +   +S ++S L++           +    +R   K      
Sbjct: 69  DIRNLSIIFQELGMSNARVNGLMSALRSALEFCADDDDYDYEFNVGSRVRGLPKNPVREI 128

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             + E+Q   L+D +L              +  L L Y    R +E   +  + + +   
Sbjct: 129 TFITEEQIEWLIDELLEQEK-------YMLATYLALSYYSAARKNEVYQVQKEELTERYF 181

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           T  ++GK  K   +   P V+K I  Y +    D   ++ + +++    K LN   F  +
Sbjct: 182 TNVVRGKRGKKFRLYYNPRVQKCIRLYIEQRGKDTIPDLFVRVYKNGERKLLNKSAFNYW 241

Query: 247 IRQLRRYL----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            +   + L    G       H  RHS   +L   G  L  ++S+  H  +STTQ Y  
Sbjct: 242 CKIFAKMLCEKEGKEYKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSYLK 299


>gi|163759225|ref|ZP_02166311.1| hypothetical protein HPDFL43_05655 [Hoeflea phototrophica DFL-43]
 gi|162283629|gb|EDQ33914.1| hypothetical protein HPDFL43_05655 [Hoeflea phototrophica DFL-43]
          Length = 366

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/274 (20%), Positives = 105/274 (38%), Gaps = 28/274 (10%)

Query: 47  LIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR----SLSGIKSFLKYL 102
           L  +A+        + +  L+  ++ A ++ RR   +   ++ R     L  I +  +  
Sbjct: 85  LHDIAWLERHFGKNRLLASLTNQDVSAMVAARRADGVSPATVNRTATARLRAIITRARDA 144

Query: 103 KKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
                     +  +      L++   + R L+ ++   L              +    + 
Sbjct: 145 WDE------PVPRIAWKNHLLRERQEVLRELSAEEETALF-----------ARLAPGYAE 187

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI--LEYYDL 216
           ++      G R++E L L  + I      + I GKGDK R VPL  ++R  +  L     
Sbjct: 188 LVRFSMLSGCRMAECLGLEWRLIDWHGGYIVITGKGDKTRHVPLSDALRALLWPLPRAHA 247

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
             F   +       +     P+       +  ++ +  G+ +    H LRH+FAT  L  
Sbjct: 248 RVFTHRIRRGSIHHKRGDIAPVEEEALNSHFARVCKKAGV-IGFRFHDLRHTFATRFLRA 306

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            GD+R++Q ILGH  + TT  Y +V + +    M
Sbjct: 307 TGDMRALQLILGHSSIETTMRYAHVTAADAKRRM 340


>gi|260593377|ref|ZP_05858835.1| putative integrase [Prevotella veroralis F0319]
 gi|260534653|gb|EEX17270.1| putative integrase [Prevotella veroralis F0319]
          Length = 408

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/319 (17%), Positives = 117/319 (36%), Gaps = 30/319 (9%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           EG  L +      L   Q+++         +K  ++      R+F  FL    E K   +
Sbjct: 107 EGYRLKKERDINFLDYFQDYIDK------YTKKDIRMLNIALRRFKDFLNDTPEYKKFTK 160

Query: 62  TI--RQLSYTEIRAFISKRRTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
            I   Q++   I AF    + + +G   +S+       K  +KY  +  + T++    + 
Sbjct: 161 RITPEQITKDMIEAFTEYLQGRSVGEGAKSIYARF---KKVIKYAIEHDVITKNPCNGIV 217

Query: 118 NLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
                  L +  L+  +   L+       +H+ +       A ++ LY  GLR  +   L
Sbjct: 218 IKVDDQILKKDVLSLDEIQQLI------ATHDERQNPEIRRAFIFCLYS-GLRYCDVKDL 270

Query: 177 TPQNIMDDQSTLRIQ--GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           T  N+      L+ +            ++  +   +L            +  +       
Sbjct: 271 TFANVDYSNKLLKFEQSKTKGHSSSSGVIIPLNDGLLRLIGEPTPAQTKDSYIFNLPSYE 330

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
                     + +++  +  G+    + H  RHSFA ++L+NG +++++ S+LGH  L  
Sbjct: 331 MCL-------KSLQRWVKSAGINKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKH 383

Query: 295 TQIYTNVNSKNGGDWMMEI 313
           T+ YT        + +  +
Sbjct: 384 TEKYTRAIDSLKQEAINSL 402


>gi|225852160|ref|YP_002732393.1| tyrosine recombinase XerC [Brucella melitensis ATCC 23457]
 gi|256044336|ref|ZP_05447240.1| Tyrosine recombinase xerC [Brucella melitensis bv. 1 str. Rev.1]
 gi|256264329|ref|ZP_05466861.1| phage integrase [Brucella melitensis bv. 2 str. 63/9]
 gi|265990748|ref|ZP_06103305.1| phage integrase [Brucella melitensis bv. 1 str. Rev.1]
 gi|225640525|gb|ACO00439.1| Tyrosine recombinase xerC [Brucella melitensis ATCC 23457]
 gi|263001532|gb|EEZ14107.1| phage integrase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094603|gb|EEZ18401.1| phage integrase [Brucella melitensis bv. 2 str. 63/9]
 gi|326408660|gb|ADZ65725.1| tyrosine recombinase XerC [Brucella melitensis M28]
 gi|326538383|gb|ADZ86598.1| tyrosine recombinase xerC [Brucella melitensis M5-90]
          Length = 308

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 96/259 (37%), Gaps = 27/259 (10%)

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
           +E +            + + I   R +   + ++ R ++ +   L+  K  K+    N+ 
Sbjct: 70  DEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSKLLR--KAHKMGDIFNLP 127

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
                K+     R L +++   L   +                 +   L   G R+ EA+
Sbjct: 128 EFIRQKERVGRIRFLEQEEEKRLFAAIKSRCEDS--------YRLSVFLVDTGCRLGEAI 179

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
            LT  +I + + T  +  K ++ R VPL    RKA               ++ P      
Sbjct: 180 GLTWNDIQEQRVTFWV-TKSNRSRTVPLTRRARKA--------SHIPRERLKGPF----- 225

Query: 235 GKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
              LN   F++   + +  +GL        H LRH+ A+ L+  G D+R +Q  LGH  L
Sbjct: 226 -SMLNQVRFRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVRGGIDIRRVQMWLGHQTL 284

Query: 293 STTQIYTNVNSKNGGDWMM 311
             T  Y ++ + +    + 
Sbjct: 285 QMTMRYAHLATHDLDSCVK 303


>gi|82523915|emb|CAI78637.1| integrase/recombinase [uncultured delta proteobacterium]
          Length = 279

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 67/314 (21%), Positives = 122/314 (38%), Gaps = 41/314 (13%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +++ E +   + +LQ+        K T++SY     +F              +++ ++S 
Sbjct: 1   MMTNEAITLFKYYLQS-----NHKKRTIESYSPLIDKFETIYKH--------RSLEEISS 47

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT----ESNILNMRNLKKSNS 124
            E+  F+    T+ +   + +   + IK+F  ++  R+        +  L  +  K   +
Sbjct: 48  DEVFQFLED-VTKNLSKSTRRLRYAQIKAFYNFIIDRRSLNMRNPCNTSLLAKAFKAPKN 106

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
            PR + +++ +  +           K    R+  IL L   CGLRI E L +   +I D 
Sbjct: 107 SPRKILDRETVEEMIY---------KAKRHRDRLILELQAKCGLRIGELLKIRVSDIPDR 157

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
             TLR    G +     +  +V + + EY                    R  P+     +
Sbjct: 158 TITLREPKSGKEAEKAYMPENVSRKLSEYIQGSTIKGAE----------RIFPICYSTAR 207

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS-ILGHFRLSTTQIYT-NVN 302
             IR L     L ++ T H LR   AT+   NG  L  +   IL H  L TTQ+Y   V+
Sbjct: 208 SLIRGLG--AKLNVNVTPHDLRRYSATYASRNGVPLEVVSKVILRHQDLKTTQVYLGKVS 265

Query: 303 SKNGGDWMMEIYDQ 316
                 WM  ++++
Sbjct: 266 DSEAIRWMDILHEK 279


>gi|319900072|ref|YP_004159800.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319415103|gb|ADV42214.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 431

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 64/295 (21%), Positives = 112/295 (37%), Gaps = 29/295 (9%)

Query: 27  IERG-LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIG 84
           +E+G  +K T   Y      F  FL  + ++K T    ++L+   I  F    R  + + 
Sbjct: 126 VEKGQRAKSTYNKYLAVYNHFKTFL--WEKKKRTDMAYKELTKEIIADFDKYLRVEKGLS 183

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +L      + S      +R I          +L+   +      E++  TL + V + 
Sbjct: 184 ANTLWIYTMPLLSLTDKAWRRGIVRTDPFGEY-SLEMQETDRGYFTEEELRTLANAVFV- 241

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ-----NIMDDQSTLRIQGKGDKIRI 199
                K   +    +       GL   +  +LT       +   ++  +  + K      
Sbjct: 242 -----KKQTSLVRDMFLFGCFTGLSYIDIKTLTHDKIQRMDFDGEEWIITRRTKTRVSSN 296

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPL+   ++ I  Y  L   DL       +F        +  V  R+++Q+ +  G+   
Sbjct: 297 VPLMEIAKELIERYKGLAGGDL-------VFPMP-----SNSVCNRHLKQIAKACGIHKE 344

Query: 260 TTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              H  RH+FAT   L NGG + ++  ILGH  +STTQIY  V ++        I
Sbjct: 345 IGFHLSRHTFATTVYLCNGGTIEALSKILGHKHISTTQIYAEVTNRMVSSDFRAI 399


>gi|225863827|ref|YP_002749205.1| prophage lambdaba02, site-specific recombinase, phage integrase
           family [Bacillus cereus 03BB102]
 gi|225786507|gb|ACO26724.1| prophage lambdaba02, site-specific recombinase, phage integrase
           family [Bacillus cereus 03BB102]
          Length = 319

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 65/312 (20%), Positives = 121/312 (38%), Gaps = 22/312 (7%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           VS E     +++L   + + G +  TL+ Y  D R  L  +  + E K     + +L+  
Sbjct: 14  VSQENKNLVKDFLIEKKAQ-GKAASTLKQYHWDLRIILFLIHQHFENK----NLIELTRK 68

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRN-LKKSNSLP 126
           +IR      +   + +  +   +S ++S L++           +    +R   K      
Sbjct: 69  DIRNLSIIFQELGMSNARVNGLMSALRSALEFCADDDDYAYEFNVGSRVRGLPKNPVREI 128

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             + E+Q   L+D +L       K      +  L L Y    R +E   +  + + +   
Sbjct: 129 TFITEEQIEWLIDELL-------KQEKYMLATYLALSYYSAARKNEVYQVQKEELTERYF 181

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           T  ++GK  K   +   P V+K I  Y D    D   ++ + +++    K LN  VF  +
Sbjct: 182 TNVVRGKRGKKFRLYYNPRVQKCIRLYIDQRGKDTIPDLFVRVYKNGERKLLNKSVFNYW 241

Query: 247 IRQLRRYL----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +   + L    G       H  RHS   +L   G  L  ++S+  H  +STT+ Y    
Sbjct: 242 CKIFAKMLYEKEGKEYKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTESYLK-- 299

Query: 303 SKNGGDWMMEIY 314
                + + EI+
Sbjct: 300 -DRSEEDIAEIF 310


>gi|255282217|ref|ZP_05346772.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bryantella formatexigens DSM 14469]
 gi|255267165|gb|EET60370.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bryantella formatexigens DSM 14469]
          Length = 429

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 63/356 (17%), Positives = 112/356 (31%), Gaps = 82/356 (23%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            L   T   Y       L  +  + + K     +  +S   I+ +++  +TQ     ++ 
Sbjct: 80  NLKYNTQLGY-------LNIIENHLKPKFGQYRLCAISAAPIQEYVNHLKTQGYAKSTVS 132

Query: 90  RSLSGIKSFLKYLK-KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
             +S +     Y          +   N+R  K  +       + +A  ++          
Sbjct: 133 GIISTLSGAFNYAVEPMHYLQYNPCNNIRYPKFRD------TKTEARYIISPEDFQRIIA 186

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----------------- 191
                ++    L + Y  GLRISEA +LT  +I  D  TL +                  
Sbjct: 187 RFDSRSQYYLPLMIGYYTGLRISEAFALTWDDIDLDNRTLSVNKITLKRNYGVDVRTVLQ 246

Query: 192 ----------------GKGDKIRIVPLLPSVRKAIL--------------EYYDLCPFDL 221
                                 R +    ++  A+               EYY       
Sbjct: 247 NKGKKEEKSAWYFGTPKTAGSERTIKFGDALYHALKYAKKTQLENRLHYGEYYTDIYLKP 306

Query: 222 NLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRYLG------------------LPLSTTA 262
             + +   +FR I  +   P    R      R  G                  L ++   
Sbjct: 307 EKDEKGDEIFRLIETERSIPCALNRANMICVRENGQYVSTDSFKYCARVIHYDLKIAFNY 366

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQT 317
           H+LRH+ AT L+ NG D++ +Q  LGH  + TT Q Y +         + +I++Q 
Sbjct: 367 HSLRHTHATTLIENGADIKDVQERLGHDNIQTTMQTYVHNTDTMSSRSV-DIFEQA 421


>gi|189405329|ref|ZP_02814784.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC869]
 gi|261258240|ref|ZP_05950773.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           FRIK966]
 gi|189370712|gb|EDU89128.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC869]
          Length = 333

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 90/233 (38%), Gaps = 29/233 (12%)

Query: 80  TQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            +K+ + ++ R  S + + F +  +  + + E+ +  +R  ++       L   +   L+
Sbjct: 121 KKKLSEATVNREQSYLHAVFAELKRLGEWSGENPLTGIRKFREEEKELAFLYVDEIERLL 180

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                  + +          ++ +    G R SEA  L    ++  + T  ++ KG K R
Sbjct: 181 IACDESRNKDLG-------VVVRIGLATGARWSEAEGLKQSQVLPGRITF-VKTKGKKNR 232

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            VP+ P ++  +               +  LF            F   I+  R  + LP 
Sbjct: 233 TVPISPQLQAML------------PKKRGALFSPCYE------AFDAAIK--RAKIELPD 272

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               H LRH+FA+H +  GG++  +Q ILGH  +  T  Y +    +    + 
Sbjct: 273 GQLTHVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAHFAPGHLEAAVE 325


>gi|189467368|ref|ZP_03016153.1| hypothetical protein BACINT_03756 [Bacteroides intestinalis DSM
           17393]
 gi|189435632|gb|EDV04617.1| hypothetical protein BACINT_03756 [Bacteroides intestinalis DSM
           17393]
          Length = 408

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/295 (16%), Positives = 106/295 (35%), Gaps = 34/295 (11%)

Query: 34  LTLQSYE------CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
            T+ +Y           +F+   + Y    I I  I  +  T+   ++  R T K    +
Sbjct: 126 KTIATYRKYEVTRRHLAEFIQ--SKYNISDIAINEITPMFITDFELYL--RTTCKCSYNT 181

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             + +   K  +   +   I       N + ++        L E +   ++   ++    
Sbjct: 182 TAKFMQFFKRIILIARNNGILIGDPFANYK-IRLEKVDRGYLTEDEIKIILKKKMVS--- 237

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKGDKIRIVPLL 203
             +  + R+  +       GL   +  +LT +N           +  + K +    VPLL
Sbjct: 238 -ERLENVRDLFVFSCF--TGLAYIDVANLTQENVRKSFDGKLWIITKRQKTNTDVNVPLL 294

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              +  + +Y            +  L  G     ++      Y++++    G+  + T H
Sbjct: 295 DIPKMILKKY------------KGKLPNGKILPVISNQKLNAYLKEIADVCGIKKNLTFH 342

Query: 264 TLRHSF-ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
             RH+F  T  L+ G  + ++  +LGH  + TTQIY  + +   G+ M  +  + 
Sbjct: 343 LARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNNKIGNDMQGLDKKF 397


>gi|116333459|ref|YP_794986.1| site-specific tyrosine recombinase XerS [Lactobacillus brevis ATCC
           367]
 gi|116098806|gb|ABJ63955.1| tyrosine recombinase XerC subunit [Lactobacillus brevis ATCC 367]
          Length = 354

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 68/355 (19%), Positives = 122/355 (34%), Gaps = 43/355 (12%)

Query: 1   MEGNNLPEIVSFELLKE---RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------A 51
           ME  +  +++  EL       Q + Q       LS  TL  Y  + R+F  +L      +
Sbjct: 1   MEKQHYLKLIDEELATAPWFVQEYYQAKATIP-LSPATLYQYLTEFRRFFNWLISEGLTS 59

Query: 52  FYTEEKITIQTIRQLSYTEIRAFISKRRTQKI--GDR------SLKRSLSGIKSFLKY-- 101
                +I IQ +  +    +  + S    Q    G R      ++ RSL+ + S  KY  
Sbjct: 60  APHPSEIDIQVLATIKKETVELYKSALLNQSKLTGARGSRTHPTINRSLNALSSLFKYLT 119

Query: 102 -----LKKRKITTESNILNMRNLKK-----------SNSLPRALNEKQALTLVDNVLL-- 143
                         + +  +  ++               L     +   L  +D      
Sbjct: 120 EDTEDEHGEAYFNRNVMHKIALVRTNETYATRAANLKTKLMLGHTDHDYLDFIDQQYETK 179

Query: 144 ---HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                         R+ AI  LL G GLR+SEA +   +++     T+ +  KG +   V
Sbjct: 180 LSPAQKRYFHRDKQRDLAINALLLGSGLRVSEAANADLRHLNLKTGTIGVIRKGGQRDTV 239

Query: 201 PLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-GLPL 258
           P+ P     I  Y D      +  N    LF        +        + + +Y     +
Sbjct: 240 PIAPWTLPYIQAYVDQRQATYHATNQDRALFLSSYRGHASRMQANSMEKMVAKYSSAFKV 299

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             T H LRH+ A+ L     + + + + LG    S T +YT++  +     + ++
Sbjct: 300 RITPHKLRHTLASKLYLATKNEQLVATQLGQNSTSATGLYTHIIDEEQRHGLEKM 354


>gi|17987590|ref|NP_540224.1| integrase [Brucella melitensis bv. 1 str. 16M]
 gi|260563689|ref|ZP_05834175.1| phage integrase [Brucella melitensis bv. 1 str. 16M]
 gi|17983297|gb|AAL52488.1| integrase [Brucella melitensis bv. 1 str. 16M]
 gi|260153705|gb|EEW88797.1| phage integrase [Brucella melitensis bv. 1 str. 16M]
          Length = 308

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 96/259 (37%), Gaps = 27/259 (10%)

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
           +E +            + + I   R +   + ++ R ++ +   L+  K  K+    N+ 
Sbjct: 70  DEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSKLLR--KAHKMGDIFNLP 127

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
                K+     R L +++   L   +                 +   L   G R+ EA+
Sbjct: 128 EFIRQKERVGRIRFLEQEEEKRLFAAIKSRCEDS--------YRLSVFLVNTGCRLGEAI 179

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
            LT  +I + + T  +  K ++ R VPL    RKA               ++ P      
Sbjct: 180 GLTWNDIQEQRVTFWV-TKSNRSRTVPLTRRARKA--------SHIPRERLKGPF----- 225

Query: 235 GKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
              LN   F++   + +  +GL        H LRH+ A+ L+  G D+R +Q  LGH  L
Sbjct: 226 -SMLNQVRFRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVRGGIDIRRVQMWLGHQTL 284

Query: 293 STTQIYTNVNSKNGGDWMM 311
             T  Y ++ + +    + 
Sbjct: 285 QMTMRYAHLATHDLDSCVK 303


>gi|314939501|ref|ZP_07846733.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
 gi|314944175|ref|ZP_07850820.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|314951902|ref|ZP_07854934.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|314994468|ref|ZP_07859747.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|314997872|ref|ZP_07862773.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313588097|gb|EFR66942.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313591123|gb|EFR69968.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|313595936|gb|EFR74781.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|313597237|gb|EFR76082.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|313641202|gb|EFS05782.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
          Length = 381

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 89/247 (36%), Gaps = 27/247 (10%)

Query: 93  SGIKSFLKYLKKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           S      KY     I T++    +    RN++K     +  +  Q  +L   +    S  
Sbjct: 136 STASRIFKYAMTLGIITKNPCELVIMPNRNVEKKKDTVKIYSRDQLESLFQYLE---SKR 192

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP------- 201
           + +    +  +L  L+  G RISEAL+L   +I  + +T+ I     + +          
Sbjct: 193 STYRADYDKTLLRFLFFSGCRISEALALDWSDIDFNSNTVTINKTLSQTKYGYKISSPKT 252

Query: 202 --------LLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
                   L       + ++          L +     +F GI  + +        +  +
Sbjct: 253 RNSYGSLSLDNKTINWLKKWQINQKRYMLTLGITDPTMIFCGIYKEIITKHAIYSRMITI 312

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDW 309
            +  G+P     H  RH+ A+ LL +G  ++ +Q  L H  +  T   Y ++  +     
Sbjct: 313 CKNSGIPF-LGNHVTRHTHASMLLESGVSMKEVQERLRHSSIKLTMDTYAHLTKETKEKT 371

Query: 310 MMEIYDQ 316
           + ++ + 
Sbjct: 372 VEKLAEH 378


>gi|227517376|ref|ZP_03947425.1| bacteriophage integrase [Enterococcus faecalis TX0104]
 gi|229548135|ref|ZP_04436860.1| bacteriophage integrase [Enterococcus faecalis ATCC 29200]
 gi|256958289|ref|ZP_05562460.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|257088127|ref|ZP_05582488.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257091256|ref|ZP_05585617.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|307274411|ref|ZP_07555595.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|312905315|ref|ZP_07764430.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|227075175|gb|EEI13138.1| bacteriophage integrase [Enterococcus faecalis TX0104]
 gi|229306736|gb|EEN72732.1| bacteriophage integrase [Enterococcus faecalis ATCC 29200]
 gi|256948785|gb|EEU65417.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256996157|gb|EEU83459.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257000068|gb|EEU86588.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|306508921|gb|EFM78007.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|310631339|gb|EFQ14622.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|315026884|gb|EFT38816.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2137]
 gi|315036577|gb|EFT48509.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0027]
 gi|315162494|gb|EFU06511.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0645]
 gi|315578594|gb|EFU90785.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0630]
          Length = 309

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 85/213 (39%), Gaps = 21/213 (9%)

Query: 103 KKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
               + +++    +    +  +   S  + LN+ +   L+  + L       W       
Sbjct: 90  VDEGLISKNPTRKIVIKGKAPRPKKS--KFLNQFEVQALLKELELGEQLNWDW------- 140

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212
            + L+   GLR SEAL+LTP++    +  + I+   +         S       RK  ++
Sbjct: 141 FILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGFFQSTKNESSKRKVQID 200

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +     F   +    P+        +        ++ L +   +P+  T H+LRH+ A+ 
Sbjct: 201 WQTAMQFSQLIRNMPPMEPIFVKGRVFNSTINSRLKVLCKRAQIPV-ITVHSLRHTHASL 259

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           LL  G  + S+ + LGH  ++TTQ  Y ++  +
Sbjct: 260 LLFAGVSIASVATRLGHSSMTTTQETYLHIIQE 292


>gi|54295982|ref|YP_122294.1| hypothetical protein plpp0140 [Legionella pneumophila str. Paris]
 gi|53755814|emb|CAH17317.1| hypothetical protein plpp0140 [Legionella pneumophila str. Paris]
          Length = 194

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 91/207 (43%), Gaps = 24/207 (11%)

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            K+  +  R L+E +   L+         +      RNSA++Y  +G GLR+ E  SLT 
Sbjct: 2   PKEGKA--RVLSETEFKRLL------IVAKDGQFAIRNSALVYCSFGLGLRVKEIASLTI 53

Query: 179 QNIMDDQSTL-------RIQGKGDKIRIVPL-LPSVRKAILEYYDLCPFDLNLNIQLPLF 230
            ++ D    L       R   KG+K R   L    +RKA+  + D       +    PLF
Sbjct: 54  ADVADYNYQLLEEICLKRSMTKGEKQRYAYLANEKIRKALQAHLDTLKH---VARDKPLF 110

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
           +  R     P   Q++ + L    G+ +  ++H+ R +F T L+  G D++++  + GH 
Sbjct: 111 QTQRKSRFTPNSLQKWFKSLYDKAGI-IGASSHSGRRTFITRLIEQGADIKAVSRLAGHA 169

Query: 291 RLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + TT IY     ++  D +  I +  
Sbjct: 170 NIVTTAIYV----EDNPDRLKRIANLA 192


>gi|265763441|ref|ZP_06092009.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
 gi|263256049|gb|EEZ27395.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
          Length = 379

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/300 (16%), Positives = 106/300 (35%), Gaps = 36/300 (12%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++++    ER ++  T Q  +C  +    F          I+    +    IRA+    +
Sbjct: 110 SFMEKRIYERQVADSTKQRQKCVLKALKEFGR--------IKDFTDICDENIRAYDEFAK 161

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +     S+      +K F++      + +E+   N +  +      + L +++   L  
Sbjct: 162 KRCKCQSSVYNYHKILKVFVREAYAAHLISENPYQNFKLDRGKRVARKFLTKEELAKL-- 219

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDK 196
                T         R   +       GL  ++      ++ +      RI+    K   
Sbjct: 220 ----ETKQIDDMCLNRVRDLFLFCCYTGLAYADLAIFNFKDAIMTDGMYRIRDERIKTGT 275

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
              + L+  V   + +Y            +LP+        ++   +  Y++ L  +  +
Sbjct: 276 PYNISLMDKVMNILKKY----------EFKLPV--------ISNQKYNSYLKILGAFCEI 317

Query: 257 PLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
               T+H  RH+FAT   L+NG  +  I  +LGH  + TTQ+Y ++           + +
Sbjct: 318 KKKLTSHVARHTFATTVALANGVRIEVISKMLGHTNIQTTQLYAHIYQAEVDKEFERLNN 377


>gi|239831475|ref|ZP_04679804.1| Tyrosine recombinase xerC [Ochrobactrum intermedium LMG 3301]
 gi|239823742|gb|EEQ95310.1| Tyrosine recombinase xerC [Ochrobactrum intermedium LMG 3301]
          Length = 308

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/264 (18%), Positives = 100/264 (37%), Gaps = 29/264 (10%)

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
           +E +  +         + + I   R +   + ++ R ++ +   L+  K  K+    N+ 
Sbjct: 70  DEILKGERFSGFDQEMLDSVIGSLRERGNSNATINRKMAALSKLLR--KAHKMGDIFNLP 127

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
                K+     R L  ++   L   +                 +   L   G R+ EA+
Sbjct: 128 EFVRQKERVGRIRFLEYEEEKRLFAAIKSRCEDS--------YRLSLFLVDTGCRLGEAI 179

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
            +T  ++ D + T  +  K ++ R VPL    RKA    ++      ++           
Sbjct: 180 GVTWNDVQDQRVTFWL-TKSNRSRTVPLTRRARKAAHIPHEKLKGPFSM----------- 227

Query: 235 GKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
              LN   F++   + +  +GL        H LRH+ A+ L+  G D+R +Q  LGH  L
Sbjct: 228 ---LNQVRFRQIWNEAKMEVGLGTDDQVVPHILRHTCASRLVRGGIDIRRVQMWLGHQTL 284

Query: 293 STTQIYTNVNSKNGGDWMM--EIY 314
             T  Y ++ + +    +   E++
Sbjct: 285 QMTMRYAHLATHDLDSCVKVLEVH 308


>gi|322391291|ref|ZP_08064761.1| phage integrase family site-specific recombinase [Streptococcus
           peroris ATCC 700780]
 gi|321145717|gb|EFX41108.1| phage integrase family site-specific recombinase [Streptococcus
           peroris ATCC 700780]
          Length = 377

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 97/275 (35%), Gaps = 34/275 (12%)

Query: 60  IQTIRQLSYTEIRAFISKRRTQ-------KIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
           +  I +L+Y +I  F    R +       K+   ++ + +  +K  L    ++    E  
Sbjct: 102 VDNIDKLTYEDIYQFREHLREKNAKNSEKKLSPNTINKIIVLLKKILDVGLRKGYYKEHP 161

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           +  ++ L       +    K+    +           K  +     +  +L+  GLR+ E
Sbjct: 162 VGLLKKLPIEKRKMQFWTVKEFKHFLSLF--------KNDEYNLELLFTVLFFTGLRLGE 213

Query: 173 ALSLTPQNIMDDQSTLRI---------------QGKGDKIRIVPLLPSVRKAILEY---Y 214
           AL+LT ++I    ST+ +                      R + +   + + + E+    
Sbjct: 214 ALALTWKDIEFSTSTIHVSKSMYVNKGEEHISSTKTKSGTRRIIINKKLIETLEEWKQEQ 273

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                + + + +           L     ++  +++            H  RHS A+ L+
Sbjct: 274 TERLREFSTDTEKLQIFQDSPITLTKNSIEKQYKKILSRDSSLKKIRIHDFRHSHASLLI 333

Query: 275 SNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
           + G D   ++  LGH  ++TT   Y+++      D
Sbjct: 334 NQGEDYLIVKERLGHASITTTIDTYSHLYPSKQKD 368


>gi|318603813|emb|CBY25311.1| integrase [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 284

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 104/249 (41%), Gaps = 36/249 (14%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR---SLSGIKSFLKYLKKRKITTESNIL 114
           +  + + QL+  E+    S+R    I   ++ R    LSG+  F   +K  + + ++ + 
Sbjct: 51  LGDKAVSQLTKRELMEHRSQRLADGISAATINRDLYRLSGM--FSALIKIEEFSGQNPLH 108

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            +  L + N     L+ ++   L+             +      I  L    G R  E  
Sbjct: 109 GLPPLAEKNPGMTFLDAEEINRLL-----------AVLSGDERLIALLCLSTGGRWGEVS 157

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +LT   +++++ T  ++ K  K R +P+   + K           ++  N    LF    
Sbjct: 158 TLTAAQVVNNRVTF-LETKNGKKRTIPISAELEK-----------EVKTNASRKLF---- 201

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              ++ G F   +R +     LP     H LRH+FA+H + NGG++ ++Q ILGH  +  
Sbjct: 202 --KVDYGKFCETLRMV--KPDLPRGQATHVLRHTFASHFMMNGGNIIALQQILGHANIQQ 257

Query: 295 TQIYTNVNS 303
           T  Y +++ 
Sbjct: 258 TMAYAHLSP 266


>gi|254718782|ref|ZP_05180593.1| Phage integrase [Brucella sp. 83/13]
 gi|265983761|ref|ZP_06096496.1| phage integrase [Brucella sp. 83/13]
 gi|306837500|ref|ZP_07470375.1| Phage integrase [Brucella sp. NF 2653]
 gi|264662353|gb|EEZ32614.1| phage integrase [Brucella sp. 83/13]
 gi|306407392|gb|EFM63596.1| Phage integrase [Brucella sp. NF 2653]
          Length = 308

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 104/276 (37%), Gaps = 31/276 (11%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97
           S++ + R FL  +    +E +            + + I   R +   + ++ R ++ +  
Sbjct: 57  SHKYNVRSFLGEI----DEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSK 112

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
            L+  K  K+    N+      K+     R L  ++   L   +                
Sbjct: 113 LLR--KAHKMGDIFNLPEFIRQKERVGRIRFLEHEEEKRLFGAIKSRCEDS--------Y 162

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            +   L   G R+ EA+ LT  +I + + T  +  K ++ R VPL    RKA        
Sbjct: 163 RLSVFLVDTGCRLGEAIGLTWNDIQEQRVTFWV-TKSNRSRTVPLTRRARKA-------- 213

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLS 275
               +  ++ P         LN   F++   + +  +GL        H LRH+ A+ L+ 
Sbjct: 214 SHIPHERLKGPF------SMLNQVRFRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVR 267

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            G D+R +Q  LGH  L  T  Y ++ + +    + 
Sbjct: 268 GGIDIRRVQMWLGHQTLQMTMRYAHLATHDLDSCVK 303


>gi|54303342|ref|YP_133335.1| bacteriophage integrase [Photobacterium profundum SS9]
 gi|46916772|emb|CAG23535.1| Hypothetical bacteriophage integrase [Photobacterium profundum SS9]
          Length = 326

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/303 (17%), Positives = 105/303 (34%), Gaps = 45/303 (14%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ---------L 66
              + W++    +R LS+    +     R     L    + K  ++ + Q         +
Sbjct: 48  AHNRAWIEKSSDKRKLSE----AISLWWRYHGQLLKEGAQSKKKLENLSQRMNNPMLCQV 103

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSL 125
           +   I  + S R +  I  R++ + ++ +   F + +   +   E  I+ +R LK+    
Sbjct: 104 TKKRIIDYRSDRLSSGISPRTINKEVALLSGVFTQMINAEEYHHEHPIIGLRKLKERKQE 163

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
              L+  +   L+ +                  I  +    G R +EA  L  +N+   +
Sbjct: 164 MAFLSSSEISFLLQH-----------ASGDMKKIAKICLATGARWNEANDLRAENVTPYR 212

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            T  +  K    R  P+   +   I        F    +     F+ +            
Sbjct: 213 VTF-VATKNGNNRTTPISKELFDEISSEKSGRLFTPCYDKFYLFFKSLNF---------- 261

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
                     LP     H LRH+FA+H + NGG++ ++Q  LGH  +  T  Y + +   
Sbjct: 262 ---------NLPKGQAVHVLRHTFASHFMQNGGNILTLQKALGHATIQQTMEYAHFSPDY 312

Query: 306 GGD 308
             D
Sbjct: 313 LQD 315


>gi|257417156|ref|ZP_05594150.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
 gi|257158984|gb|EEU88944.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
          Length = 309

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 85/213 (39%), Gaps = 21/213 (9%)

Query: 103 KKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
               + +++    +    +  +   S  + LN+ +   L+  + L       W       
Sbjct: 90  VDEGLISKNPTRKIVIKGKTPRPKKS--KFLNQFEVQALLKELELGEQLNWDW------- 140

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212
            + L+   GLR SEAL+LTP++    +  + I+   +         S       RK  ++
Sbjct: 141 FILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGFFQSTKNESSKRKVQID 200

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +     F   +    P+        +        ++ L +   +P+  T H+LRH+ A+ 
Sbjct: 201 WQTAMQFSQLIRNMPPMEPIFVKGRVFNSTINSRLKVLCKRAQIPV-ITVHSLRHTHASL 259

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           LL  G  + S+ + LGH  ++TTQ  Y ++  +
Sbjct: 260 LLFAGVSIASVATRLGHSSMTTTQETYLHIIQE 292


>gi|229122156|ref|ZP_04251371.1| DNA integration/recombination/invertion protein [Bacillus cereus
           95/8201]
 gi|228661282|gb|EEL16907.1| DNA integration/recombination/invertion protein [Bacillus cereus
           95/8201]
          Length = 369

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/315 (17%), Positives = 110/315 (34%), Gaps = 39/315 (12%)

Query: 18  RQNWLQNLEIERGLS--KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            +++L +    + +S  + T   Y         F+  +    I +  + +L+   I+   
Sbjct: 65  LEDYLNHWLEIKSMSIERSTFVGYR-------AFINQHVIPSIGMVALHKLNVMHIQKCY 117

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
                + I + S+      +KS L    K+ I + +        KK  +  +   E++  
Sbjct: 118 KTAIDRGIANNSVLLMHRILKSALNLAVKQNIISRNPADFAEIPKKERTSIQTWTEEEVK 177

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
                 LLH+      I         L    G+R+ E L L  Q++  ++ T+ I     
Sbjct: 178 KF----LLHSQESRYHIGY------LLAITTGMRMGEVLGLRWQDVDFEKHTVTINQTSG 227

Query: 196 KI-------------RIVPLLPSVRKAILEYYDLCPFDL-----NLNIQLPLFRGIRGKP 237
                          R +P+     +++ ++  L   +             +     G  
Sbjct: 228 HDNKIKKTAKTNSSKRTIPVPKETIESLKKHKVLINQEKLRLGSAYQDFDLINCNEFGMI 287

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
           +    F++   +     G+      H LRH+ AT LL  G + + I   LGH  +S T  
Sbjct: 288 IKKANFRKNFIRAIHNAGV-KEIKFHDLRHTHATILLKQGVNPKIISERLGHTDISMTLS 346

Query: 297 IYTNVNSKNGGDWMM 311
           +Y++V      + + 
Sbjct: 347 VYSHVLPNMQEEAVK 361


>gi|148559347|ref|YP_001258625.1| phage integrase family site specific recombinase [Brucella ovis
           ATCC 25840]
 gi|148370604|gb|ABQ60583.1| site-specific recombinase, phage integrase family [Brucella ovis
           ATCC 25840]
          Length = 308

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 93/248 (37%), Gaps = 27/248 (10%)

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
                + + I   R +   + ++ R ++ +   L+  K  K+    N+      K+    
Sbjct: 81  FDQEMLDSIIGTLRERGNSNATINRKMAALSKLLR--KAHKMGDIFNLPEFIRQKERVGR 138

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
            R L +++   L   +                 +   L   G R+ EA+ LT  +I + +
Sbjct: 139 IRFLEQEEEKRLFAAIKSRCEDS--------YRLSVFLVDTGCRLGEAIGLTWNDIQEQR 190

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            T  +  K ++ R VPL    RKA               ++ P         LN   F++
Sbjct: 191 VTFWV-TKSNRSRTVPLTRRARKA--------SHIPRERLKGPF------SMLNQVRFRQ 235

Query: 246 YIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              + +  +GL        H LRH+ A+ L+  G D+R +Q  LGH  L  T  Y ++ +
Sbjct: 236 IWNEAKAEVGLGADDQIVPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLAT 295

Query: 304 KNGGDWMM 311
            +    + 
Sbjct: 296 HDLDSCVK 303


>gi|108761635|ref|YP_633012.1| phage integrase family site specific recombinase [Myxococcus
           xanthus DK 1622]
 gi|108465515|gb|ABF90700.1| site-specific recombinase, phage integrase family [Myxococcus
           xanthus DK 1622]
          Length = 334

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 93/248 (37%), Gaps = 41/248 (16%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR----ALNEKQALT 136
           + +  +++   L+ +   L   ++  +  ++       +K    LP+     L+ ++A  
Sbjct: 87  KPLSLKTINNVLTVLHKLLTLAEEHGVIRQAP-----RVKPFGKLPKPPFDFLSFEEADQ 141

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---- 192
           L+         E +W       +L +    GLR  E + L   ++   +  L ++     
Sbjct: 142 LL------AVAEPEW-----RTLLRVAIKTGLRQGELIGLRWHDLTLTRGLLHVRRTIWR 190

Query: 193 ------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
                 KG + R V L  SV  A+  +               +F    G+PL  G     
Sbjct: 191 GIEGLPKGGRERTVDLPASVVDALNAHRHRRGR--------FVFCQEDGQPLTKGKMAAP 242

Query: 247 IRQLRRYLGLPLSTT---AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           + +  R  G+         H LRH++ +HL   G  L+ IQ ++GH  +  T  Y +++ 
Sbjct: 243 LGRALRAAGITREVGQIGWHDLRHTYGSHLAMRGIPLKVIQELIGHATIEMTNRYAHLSP 302

Query: 304 KNGGDWMM 311
               + + 
Sbjct: 303 DTRREAVA 310


>gi|138557|sp|P06723|VINT_BP186 RecName: Full=Integrase
 gi|3337277|gb|AAC34175.1| Int [Enterobacteria phage 186]
          Length = 336

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 64/321 (19%), Positives = 114/321 (35%), Gaps = 46/321 (14%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDT--------RQFLIFLAFYTEEKIT 59
           E ++FE    +  W +  E  R L +L    Y            RQ  +  AF    +  
Sbjct: 34  EALAFEQYTVQNPWQEEKEDRRTLKELVDSWYSAHGITLKDGLKRQLAMHHAFECMGEPL 93

Query: 60  IQTIRQLSYTEIRA------FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESN 112
            +      ++  R       +    R +++  R+L   L+  ++    L +      E+ 
Sbjct: 94  ARDFDAQMFSRYREKRLKGEYARSNRVKEVSPRTLNLELAYFRAVFNELNRLGEWKGENP 153

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           + NMR  +        L   Q   L+     H   + +        ++ +    G R SE
Sbjct: 154 LKNMRPFRTEEMEMTWLTHDQISQLLGECNRHDHPDLE-------TVVRICLATGARWSE 206

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
           A SL    +   + T     KG K R VP+   + +++ +           + +  LF  
Sbjct: 207 AESLRKSQLAKYKITYT-NTKGRKNRTVPISKELYESLPD-----------DKKGRLFSD 254

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             G            R      G+  P     H LRH+FA+H + NGG++  +Q +LGH 
Sbjct: 255 CYG----------AFRSALERTGIELPAGQLTHVLRHTFASHFMMNGGNILVLQRVLGHT 304

Query: 291 RLSTTQIYTNVNSKNGGDWMM 311
            +  T  Y +    +  D + 
Sbjct: 305 DIKMTMRYAHFAPDHLEDAVK 325


>gi|326335397|ref|ZP_08201585.1| integrase [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325692462|gb|EGD34413.1| integrase [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 411

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/313 (17%), Positives = 107/313 (34%), Gaps = 31/313 (9%)

Query: 9   IVSFELLKERQNWLQN--LEIERG-LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           ++   LLK  + + ++  L +E+G  S  TL  YE        F+ +      +  + ++
Sbjct: 108 VMEDSLLKVYEKFKEDFALMVEKGVRSSRTLNKYENVYTHLSEFIQYKYRR--SDISFKE 165

Query: 66  LSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L+   I  F    R  K +   ++   +  +   ++    + I   +   N  +  +   
Sbjct: 166 LTEDFINDFDFYLRVNKSLTHNTIWVYMMPLCKMVEIAIDKGIIYHNPFKNYISSMEEKD 225

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN---- 180
               L  ++   L+       S E          +       G    +   L   +    
Sbjct: 226 R-GYLLREEVEALLQYHPKSASVELV------RDLFVFSCFTGFSYIDIKQLKRSHLQSF 278

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
              ++  ++ + K D    V LL    K I +Y               LF        + 
Sbjct: 279 FDGNKWLIKRRQKSDVPCNVRLLDIAEKIIEKY-------EGTTRTEALFPTP-----SN 326

Query: 241 GVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                 IR++ +   +      + H  RH+F T  L+ G  L S+  ++GH  + TTQIY
Sbjct: 327 TNCNLLIRKMMKDCNIIREKPISFHWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIY 386

Query: 299 TNVNSKNGGDWMM 311
             + ++     M 
Sbjct: 387 AKITNEKISKDME 399


>gi|239621464|ref|ZP_04664495.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239515925|gb|EEQ55792.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 391

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 105/282 (37%), Gaps = 30/282 (10%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
              + E K   + I  +++ E++A++     +  G  S+ R    ++       + K+ +
Sbjct: 93  WKCHCEAKWAERQIGSITHAEVQAWVGSIIDKS-GAPSVSRPYQIMQGICSMAVRDKLIS 151

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
            +    +   +      R +       L    L + +   + +     A++ LL  CGLR
Sbjct: 152 SNPCDGIELPRLPKRKDRRIYLTITRLL---ALANEASNCRKLGEERRALILLLGFCGLR 208

Query: 170 ISEALSLTPQNIMDDQSTLRIQG--------------KGDKIRIVPLLPSVRKAILEYYD 215
             EA  L  +++  D   L ++               K  + R VP+   V  A+    +
Sbjct: 209 WGEAAGLQRRDLDFDAGILHVRRNLVYVNAKWAEGTPKNHERRDVPMPRIVMDALKPICE 268

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQR---YIRQLRRYLGLPLS--TTAHTLRHSFA 270
               +        +FR +RG P+      R   +       LG         H LRH+ A
Sbjct: 269 QREHEER------VFRDVRGGPIRKQSLARETGWWTHTLTRLGWKRDDWPVPHDLRHTAA 322

Query: 271 THLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMM 311
           +  +  G +++++Q +LGH   S T  +Y ++   +  D   
Sbjct: 323 SLAVHAGANVKALQRMLGHKNASMTLDVYADLFDSDLMDVAR 364


>gi|189462529|ref|ZP_03011314.1| hypothetical protein BACCOP_03218 [Bacteroides coprocola DSM 17136]
 gi|189430690|gb|EDU99674.1| hypothetical protein BACCOP_03218 [Bacteroides coprocola DSM 17136]
          Length = 411

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/292 (17%), Positives = 101/292 (34%), Gaps = 28/292 (9%)

Query: 34  LTLQSYE------CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
            T+ +Y           +F+   + Y    I+I+ I  +  T+   ++  R   K G  +
Sbjct: 128 KTIATYRKYEVTRRHLAEFIQ--SKYNVSDISIKEISPMFITDFELYL--RTACKCGYNT 183

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             + +   K  +   +   I       + + ++        L E +   ++   ++    
Sbjct: 184 TAKFMQFFKRIIIIARNNGILVNDPFASYK-IRLEKVDRGYLTEDEIKIILKKKMVS--- 239

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRIVPLLPSV 206
             +    R+  I       GL   +   LT  NI       L I  K  K      +P +
Sbjct: 240 -ERLEHVRDLFIFACF--TGLAYIDVAGLTQDNIRKSFDGNLWIMTKRQKTNTDVNVP-L 295

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
                         L     LP+        ++      Y++++    G+  + T H  R
Sbjct: 296 LDIPKMILKKYKGKLPNGKILPV--------ISNQKLNAYLKEIADICGIKKNLTFHLAR 347

Query: 267 HSF-ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           H+F  T  LS G  + ++  +LGH  + TTQIY  + +   G  M  +  + 
Sbjct: 348 HTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSKIGSDMQGLDKKF 399


>gi|169833903|ref|YP_001693494.1| integrase [Streptococcus pneumoniae Hungary19A-6]
 gi|168996405|gb|ACA37017.1| integrase [Streptococcus pneumoniae Hungary19A-6]
          Length = 380

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 97/268 (36%), Gaps = 26/268 (9%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK- 121
           +R +    ++  I +          + +    +   +K+  +      + +L +   +K 
Sbjct: 107 VRNIDRRLLQKVIDQLLQDGRSHNYVSKIKFKLNQIMKFAIRMNYIDTNEMLFVETPRKV 166

Query: 122 ------SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
                      + L++K+    + N+      + +        I  +L+  G+R  E  +
Sbjct: 167 ITSDELRKKNTKYLDQKEFKLFIQNLKDEALCDYRITKYIR--IAKVLFLTGMRYGELAA 224

Query: 176 LTP-QNIMDDQSTLRIQGKGDK-------------IRIVPLLPSVRKAILEYYDLCPFDL 221
           L   ++I   + T+ I+   D               R++     V   I E   +     
Sbjct: 225 LNYKEDIDFSKKTIHIKHTYDFRQKERTTPKTIKSDRVITAPQKVLDIIKE--QIIENAT 282

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
           N      +F    G+P+        +++  + +G+  + T HT RHS  + L   G  L 
Sbjct: 283 NGFDTDFIFINTLGEPITNARVICALKRHGQKIGIEKNITTHTFRHSHISLLAELGIPLT 342

Query: 282 SIQSILGHFRLSTT-QIYTNVNSKNGGD 308
           +I   +GH    TT +IY++V  K   D
Sbjct: 343 AIMDRVGHSDSKTTLEIYSHVTQKMVSD 370


>gi|298487012|ref|ZP_07005064.1| site-specific recombinase, phage integrase family [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298158454|gb|EFH99522.1| site-specific recombinase, phage integrase family [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 250

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 102/234 (43%), Gaps = 11/234 (4%)

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRALN 130
           A ++  R       +    ++ I+  +    +  + +   +L +R++K      L +  N
Sbjct: 3   ALVATLREDDYAPNTTSLYVNAIRGVMNEAWRHDLISHEQLLKIRSIKPVSGTRLAKGRN 62

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            +   TL+  ++   + + +    R++AI+ +LYG G+R SE+++L    I   + +LR+
Sbjct: 63  IR--RTLIRELMEACAADPRPQGRRDAAIIAILYGSGMRKSESVNLDLSQIDFAERSLRV 120

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNP-GVFQRY 246
            GKG+K  I        KA+ ++ +L    L        F   R  RG  +    + +  
Sbjct: 121 LGKGNKQLIKYAPEWAFKALNDWLELRRSCLQPGQGDDPFLFNRIRRGSHITRDRITKHA 180

Query: 247 IRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           I  + +  G  + ++   H  R SF T ++    DL   Q +  H  +STT  Y
Sbjct: 181 IYFIAKQRGRQVGVNIMPHDFRRSFITRVIEE-FDLSIAQKLAHHTHISTTASY 233


>gi|257438381|ref|ZP_05614136.1| site-specific recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
 gi|257199212|gb|EEU97496.1| site-specific recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
          Length = 342

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 58/311 (18%), Positives = 120/311 (38%), Gaps = 29/311 (9%)

Query: 18  RQNWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
            ++W      E     ++  T +SY+   +          +E    + +  +   +I  F
Sbjct: 47  FEDWADT-WFEGHKDNIAPTTQESYKYCLKML--------KEGFYHRPLTVIRPIDIENF 97

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +   R     D  + ++   +    +  +   +   + +     ++ + +  R    K+A
Sbjct: 98  LKGMRRDGRSDSYISKARGMLYQIFQKAEANDLVRRNPVRLAEKMRATGTAKR----KEA 153

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-- 192
            T  +   L        +       + LL G G+R+ E L+L PQ I +D S + I+   
Sbjct: 154 FTTAEVAHLMKVLPDDRMGLS----IRLLLGTGMRMQELLALEPQFIEEDGSVIHIRQAV 209

Query: 193 ---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK---PLNPGVFQRY 246
              KG      P      + I    ++ P  + L      F     K   P NP  F+  
Sbjct: 210 KVVKGTVSIGSPKSKDSIRDIPVPLNVRPCAIKLRDTTDQFIWESPKTGLPCNPTHFRDV 269

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
            R+     G     T H+ RH++ + + + G D+++IQSI+GH     T+ Y +V  ++ 
Sbjct: 270 FRKSLEEAGDVRLLTPHSCRHTYVSQMQALGVDIQTIQSIVGHADTEMTEHYLHV-QESI 328

Query: 307 GDWMMEIYDQT 317
               ++++++ 
Sbjct: 329 RQSAIQLFNEA 339


>gi|167913063|ref|ZP_02500154.1| putative bacteriophage integrase [Burkholderia pseudomallei 112]
          Length = 247

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 107/255 (41%), Gaps = 17/255 (6%)

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKK 121
           R+L   +++ ++S R    + + ++KR L  + + + +++      E  + + ++  L  
Sbjct: 2   RELKRGDVQRYVSARLADGVCESTVKRELRLLSAAINFVRTEHDYPELANPVQSL-GLDG 60

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
             S  R ++  +A  L+       +             + L    G R +E L+L    +
Sbjct: 61  GESRVRWISRSEATALI------LAAGAVARQPHLRNFVRLALSTGCRKNELLALEWHRV 114

Query: 182 MDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
             ++S  R+     K  K R+VPL      A+ +         +      +F    G+ +
Sbjct: 115 DFERSHFRLKCEHTKNGKRRLVPLNSGALLALRD--QRDWVARHCAGSEWVFASSSGRRV 172

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             G  Q+         G+  +   H LRH+FA+ L+  G  L  ++ +LGH  ++  + Y
Sbjct: 173 --GNLQKGFVAACARAGIE-NFRIHDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERY 229

Query: 299 TNVNSKNGGDWMMEI 313
            +++S +G + + ++
Sbjct: 230 AHLSSDHGREAVQKL 244


>gi|167566496|ref|ZP_02359412.1| Bbp50 [Burkholderia oklahomensis EO147]
          Length = 362

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/312 (16%), Positives = 99/312 (31%), Gaps = 36/312 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              WL    IE      T   YE   R +        +  +    +R+L  + +   I+ 
Sbjct: 54  LDTWLTAQRIE----SSTKDGYESAIRFWKAAACDKNQNPLGPTPLRRLKLSHVLTAIAG 109

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R    +  +++   +S ++  L       + T++   N+   K     P   +  ++  +
Sbjct: 110 RPD--LSGKTVNNYVSVMRKALDLAVSDNVLTDNPAANVPRAKHQKPPPDPFSRDESEKI 167

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI------- 190
           +         +          ++   +  GLR SE   L   N+     T+ +       
Sbjct: 168 IHEAERAYPGQVHN-------LIEFWFWTGLRTSEIFGLQWLNVDLQNGTILVAEALVRG 220

Query: 191 ----QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR- 245
               + K    R V L      A+                 P +        +   F+R 
Sbjct: 221 EHKDRTKTAVARTVRLNSRALAALTRQRSFTQMAGAAIFHDPRYSTRWE---DERAFRRS 277

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS---TTQIYTN-V 301
           +   + + LG+      + +RHS+AT +L  G         LGH  +    TT  Y   +
Sbjct: 278 FWTPILKRLGIRYR-RPYNMRHSYATAMLMAGMTPAFCAKQLGH-SIEMFLTT--YAKWM 333

Query: 302 NSKNGGDWMMEI 313
           + +     M  +
Sbjct: 334 DGEQNALEMARL 345


>gi|157159819|ref|YP_001457137.1| phage integrase family site specific recombinase [Escherichia coli
           HS]
 gi|157065499|gb|ABV04754.1| site-specific recombinase, phage integrase family [Escherichia coli
           HS]
          Length = 173

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 58/145 (40%), Gaps = 1/145 (0%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYY 214
           N  ++ + +  G R SE L L   +I      L I+  K       PLLP     I  + 
Sbjct: 13  NRCLIMMAFIHGFRASELLDLRLSDIDASGKQLNIRRIKNGFSTTHPLLPDEYNLIKLWL 72

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                  N      LF   + +P++   F   IR+  +  GL +    H LRH+    L 
Sbjct: 73  KQRKLIENGVEGDWLFLSRKRRPISRQHFFSIIREAGKRAGLAVKAHPHMLRHACGFALA 132

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYT 299
            NG D R +Q  LGH  +  T  YT
Sbjct: 133 DNGVDTRLLQDYLGHRNIQHTVRYT 157


>gi|332877049|ref|ZP_08444800.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332684939|gb|EGJ57785.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 308

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 53/298 (17%), Positives = 111/298 (37%), Gaps = 35/298 (11%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           TL +Y          L ++  E         LS   ++ F+ ++    +  +S+K  L  
Sbjct: 25  TLAAYMLILEN--HILPYFGNE-------DTLSEKSVQTFVLQKLNAGMSAKSVKDILIV 75

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +K  +K+  K +  +           ++N     L       ++D +  + +        
Sbjct: 76  LKMVMKFGVKNEWMSYCEWEIKYPPTETNKELEVLTVANHKKILDYIRQNFTFRNLG--- 132

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL--- 211
                +Y+    GLRI E  +L   +I  +  T+ +Q   ++I ++       + ++   
Sbjct: 133 -----IYISLSTGLRIGEVCALRWSDIDIEAGTISVQRTIERIYVIEGDKKHTELVINTP 187

Query: 212 -------------EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
                        E   +      +             P  P  ++ Y ++L   LG+P 
Sbjct: 188 KTKNSCREIPMSKELISMVKPLKKIVNSDYYVLTNEPSPTEPRTYRNYYKRLMEQLGIPK 247

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYD 315
               H LRHSFAT  + +  D +++  +LGH  +STT  +Y + N +     + +++ 
Sbjct: 248 -LKYHGLRHSFATRCIESNCDYKTVSVLLGHSNISTTLNLYVHPNMEQKKRCIAKVFK 304


>gi|327402450|ref|YP_004343288.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327317958|gb|AEA42450.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 404

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 92/258 (35%), Gaps = 19/258 (7%)

Query: 65  QLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITT--ESNILNMRNLKK 121
            ++   + A+ +  RT+      ++  +L  I++      ++ I     S  L  + +K 
Sbjct: 149 DITPKFLTAYEAYLRTKLNNSTNTIHTNLKFIRTVFNKAFQQDIIELSSSPFLKFK-MKT 207

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
                  L E +     +      +     ++      ++  Y  GLRIS+ L L   + 
Sbjct: 208 EKVQRDYLTEDELKIFAEV----DTQGNLKLELHQDMFVFAAYSGGLRISDILQLQWIHF 263

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY---------YDLCPFDLNLNIQLPLFRG 232
            D      I+  G +I  + +       I +Y         Y       +  ++  + + 
Sbjct: 264 DDSHINFTIKKTGSQI-SIKIPNIALNIIEKYNLTQSEKTSYIFPMLPEDTYLRDAIGQD 322

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                    V  + ++ L +   +  + + H  RH++AT  L  G  +  +  ++GH  +
Sbjct: 323 KAISSATA-VINKNLKTLAKLAKIEKNISFHISRHTWATRALRKGMSIDKVSKLMGHSAI 381

Query: 293 STTQIYTNVNSKNGGDWM 310
             TQIY  + +      M
Sbjct: 382 KETQIYAKIVNSELDKAM 399


>gi|295110020|emb|CBL23973.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 397

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 54/298 (18%), Positives = 103/298 (34%), Gaps = 34/298 (11%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           +Q    +    E+K+  ++I  +  ++ + +  + + +     ++      +K+      
Sbjct: 104 KQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMKDKGFSYNTINNHKRSLKASFYIAI 163

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           +     ++      + K S  L     EK ALT      L +  +T  +  +    + +L
Sbjct: 164 QDDCVRKNPF----DFKLSEVLENDTKEKVALTEEQEQALLSFIKTDNVYHKYYDDVLIL 219

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVR 207
              GLRISE   LT  ++      + I                       R VPL     
Sbjct: 220 LKTGLRISELCGLTIMDVDFIHEVVVIDHQLLKSKEQGYYIETPKTKSGTRQVPLSKETI 279

Query: 208 KAILEYYDLCPFDLNL---NIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGL 256
           +A        P             LF   +GKP        L   + ++Y +  +     
Sbjct: 280 QAFQRVMKKRPKAEPFVIDGRGNFLFVNHKGKPKVAIDYTMLFVRMVKKYNKHHKD--NP 337

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
               T HTLRH+F T L +   + + +Q I+GH  +S T   Y + +       +  +
Sbjct: 338 LPHITPHTLRHTFCTRLANKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQRL 395


>gi|327197974|ref|YP_004306291.1| putative site specific recombinase [Lactococcus phage 949]
 gi|306009294|gb|ADM73689.1| putative site specific recombinase [Lactococcus phage 949]
          Length = 330

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 69/337 (20%), Positives = 131/337 (38%), Gaps = 58/337 (17%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
            L + ++ EL    +++L+    +   S  TL+ Y+     F  F+     +++  + + 
Sbjct: 20  KLADPITVEL---VEDFLR----QSQKSDQTLKQYKSGLYIFCKFV----YDELGNKPVT 68

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL---------KYLKKRKITTESNILN 115
           +L   +   + +K     + D ++K   S + +F          +Y   R I T++ + N
Sbjct: 69  KLKIRDAMRYQNKLVDIGLSDSAIKFKRSVVSAFYLHIEAFWSDEYPNVRNIFTKA-VPN 127

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           + N KK   +P  L   +   L       T H       +  A L   Y  G R  E+  
Sbjct: 128 VGNQKKKEKVP--LTSAEIKKL-------TQHLMDNKRWQQLAYLTYTYQTGCRREESRQ 178

Query: 176 LTPQ----------------NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           L  +                  M      + +GK  KIR          A+ ++ +    
Sbjct: 179 LKKEVVGYSKYVNPKGVEKNYYMTHSIRAKGRGKTGKIRKFQFGEDAMVALQKWIEERGE 238

Query: 220 DLNLNIQLPLFRGIR-----GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-L 273
           D        +F          K ++P +F  +  Q  ++LG       H LR S AT+ +
Sbjct: 239 D----DCEYMFVSRSKETGEYKQISPDMFNAWCTQWGKFLG--KKVHPHLLRSSRATNSV 292

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           + +G D++++Q +LGH   STT+IY   + ++  D +
Sbjct: 293 VEDGKDIKAVQQLLGHNSSSTTEIYIVRDDEDEIDAL 329


>gi|238922505|ref|YP_002936018.1| integrase/recombinase, XerC/CodV family [Eubacterium rectale ATCC
           33656]
 gi|238874177|gb|ACR73884.1| integrase/recombinase, XerC/CodV family [Eubacterium rectale ATCC
           33656]
          Length = 411

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 55/345 (15%), Positives = 113/345 (32%), Gaps = 64/345 (18%)

Query: 20  NWL--QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           N+L  + +  +  L   T  +Y      F+        +    + +R + Y+++  F + 
Sbjct: 73  NFLFDRYISTKTELRSTTYSNYLYTWNHFIR-------DTFGKKKVRDVKYSDVLFFYTD 125

Query: 78  R-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM--RNLKK---SNSLPRALNE 131
               Q +   +L+   + ++   +   +  I  ++ +        K+   +    RAL  
Sbjct: 126 LINNQGLQINTLETINTVLRPTFQLAVRDDIIRKNPVDGAYCEVKKRNGGARKTRRALTV 185

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            Q    ++ V  +                  L G G RI EA+ +   +I  +   + I 
Sbjct: 186 DQQRKFMEYVAKN------PFFYHWYPFFVFLLGTGCRIGEAIGIRWDDIDLENRIIDIN 239

Query: 192 G----------------------KGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLN 224
                                       R +P++  V   + E Y+         +    
Sbjct: 240 HSLTYYQRADDSYKCEFRVSLPKTEAGNRRIPMMQQVYDVLQEEYERQKQEGFCVENVDG 299

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST---------------TAHTLRHSF 269
           +   +F    G P NP    R I+++                         + H  RH+F
Sbjct: 300 MTNFVFTNRFGMPHNPAAVNRAIKRIVDTHNSEEEVAAKKEKREPVMIPRFSCHIFRHTF 359

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
           A+    N  +++ IQ ++GH  +STT  IY   N       + ++
Sbjct: 360 ASRFCENETNIKVIQEVMGHADVSTTMNIYAEANPDVTKSVIEKL 404


>gi|299821514|ref|ZP_07053402.1| bacteriophage integrase [Listeria grayi DSM 20601]
 gi|299817179|gb|EFI84415.1| bacteriophage integrase [Listeria grayi DSM 20601]
          Length = 390

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 101/292 (34%), Gaps = 29/292 (9%)

Query: 52  FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111
               +      I Q++  + + +++    +K    ++  + S  +   K   +  +    
Sbjct: 91  RRLAKHFGYAKINQITSIQYQDYLNSL-NEKYATNTISGTHSTARMIFKRAYQDNLIDRD 149

Query: 112 NILNMRNLKK---SNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-RNSAILYLLYGCG 167
             L  +  KK   + S+  ++N ++        +    H  K      +  I  LL   G
Sbjct: 150 PTLYAKLPKKIETAQSIQDSINNRRVKIFSREEISLFLHNAKTQGLSNDFEIFSLLVNTG 209

Query: 168 LRISEALSLTPQNIMDDQSTLRIQ--------------------GKGDKIRIVPLLPSVR 207
           +R+ E  +L    ++  ++   I+                         IR + +   + 
Sbjct: 210 MRVGELCALQENALLKKENGYYIRITQTIYNPTNKMDKYQLLPPKTKGSIRDIEISYYIY 269

Query: 208 KAILEYYDL---CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           + I +           L   ++  +F    G P  P      +R++ +   LP   + H 
Sbjct: 270 ELIRKQIIKQKELYIALGGAMKRFIFSKDFGYPETPKQIANRMRRILKLCDLPSYYSPHN 329

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYD 315
            RHS+A+ L   G     IQ  LGH    TT + Y ++  K   +   ++ +
Sbjct: 330 FRHSYASILEEEGVPTLYIQKQLGHSTFETTKETYIHLTEKTQKEASEKVLN 381


>gi|325104620|ref|YP_004274274.1| integrase family protein [Pedobacter saltans DSM 12145]
 gi|324973468|gb|ADY52452.1| integrase family protein [Pedobacter saltans DSM 12145]
          Length = 405

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 53/317 (16%), Positives = 122/317 (38%), Gaps = 33/317 (10%)

Query: 16  KERQNWLQNLEIE----RG-LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           K+ + + +  +      +G +S  T ++Y     +F  F+               ++ T 
Sbjct: 99  KDAELFFEYCKNRCARIKGTVSVATHRNYVQYVEKFKKFVKDEE------LYFDDITVTM 152

Query: 71  IRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNLKKSNSLPR 127
           ++ +I+    T K G  ++  S+  +    K   +  I  +S      ++ +K+      
Sbjct: 153 LKDYINYMSNTLKNGATTIHYSIRILSLMFKEAAREDIIPDSLYPFSKVQ-IKRDKGKRL 211

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            LN++Q   L +  + +   +  + D      ++ +Y  GLR S+ ++L  +N    ++ 
Sbjct: 212 FLNKEQLEQLKNFKIEYEGKDEVFRDM----FIFSVYAGGLRFSDVVTLKWENFNAKENR 267

Query: 188 L-RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           + +   K  +     +       + +Y          +   P+        +N       
Sbjct: 268 ITKTIRKTGRQHSFKIGQQALDILQQY--KSEIAKPSDFIFPIIEDQELFEMNKDTEAHI 325

Query: 247 I-----------RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           I           R+L + + LP + + H  RH+FAT+ L+NG  +  +  ++ H  +  T
Sbjct: 326 INAKNILCGQKLRRLGKAMELPFTLSFHLSRHTFATNALNNGMRIEYVSKLMDHSDIGIT 385

Query: 296 QIYTNVNSKNGGDWMME 312
           QIY  + S+     + +
Sbjct: 386 QIYAKIISEELDKAVEQ 402


>gi|157147898|ref|YP_001455217.1| tyrosine recombinase [Citrobacter koseri ATCC BAA-895]
 gi|157085103|gb|ABV14781.1| hypothetical protein CKO_03705 [Citrobacter koseri ATCC BAA-895]
          Length = 200

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 2/172 (1%)

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L +++ +T  +  L+  +  T     RN  ++ L +  GLR SE   L   +I      +
Sbjct: 7   LEKRRFMTQNEINLILNAVSTGTYAVRNRCLVLLCFIHGLRASEICRLRISDIDLKDKCI 66

Query: 189 RIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
            I   K       PLL    ++I  +  +     +   +  LF   +G PL+   F + I
Sbjct: 67  HIYRLKKGFSTTHPLLEEEIRSIKSWLKIRLTSQHSETE-WLFLSRKGNPLSRQQFYQII 125

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            +  +   L +    H LRHS    L + G D R IQ  LGH  +  T  YT
Sbjct: 126 ARAGKKAKLAICAHPHMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYT 177


>gi|282899197|ref|ZP_06307172.1| Phage integrase protein [Cylindrospermopsis raciborskii CS-505]
 gi|281195912|gb|EFA70834.1| Phage integrase protein [Cylindrospermopsis raciborskii CS-505]
          Length = 158

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 13/152 (8%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAI 210
           + RN  IL LL+ CGLR+ E   L   +I D+ ST  + I GKG+K R + + P +  ++
Sbjct: 7   NTRNRLILQLLFFCGLRVGELTILLWADIKDNGSTAYVHITGKGNKQRTLIIPPLLWASL 66

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
             +            + P+F+  +G   L        +R   + +G+  S + H LRH+ 
Sbjct: 67  KSH--------KTTNESPVFKSRKGGKNLTQKAVWDIVRTASQRIGI--SASPHWLRHTH 116

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           A+  L NG D+  + + LGH  ++TT  Y + 
Sbjct: 117 ASLALHNGADINQVSTSLGHSSVATTTKYLHA 148


>gi|99034637|ref|ZP_01314587.1| hypothetical protein Wendoof_01000596 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 144

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 69/137 (50%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L    + W + L   R  S  TL+SY  D +  + FL  +   ++ + T+ +LS  E+R
Sbjct: 2   DLGSIIEKWYEWLRCNRSYSPNTLESYMRDLKDLISFLNTHIGGEVNVGTLEKLSVPELR 61

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           ++++ R  + +  RS  R+LS I++F KY+K         + ++    +  +LP+AL+  
Sbjct: 62  SWLTSRYARGVNARSNTRALSVIRNFFKYIKNNHNIDNEAVFSLSRPIQRRTLPKALSIP 121

Query: 133 QALTLVDNVLLHTSHET 149
              TL+  + L    E+
Sbjct: 122 DIKTLLKEMKLSDLGES 138


>gi|271965863|ref|YP_003340059.1| Site-specific recombinase XerD-like protein [Streptosporangium
           roseum DSM 43021]
 gi|270509038|gb|ACZ87316.1| Site-specific recombinase XerD-like protein [Streptosporangium
           roseum DSM 43021]
          Length = 375

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 115/346 (33%), Gaps = 61/346 (17%)

Query: 31  LSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKI---GDR 86
           LS  T + Y  D   F+         + +T + +  +     R    +R           
Sbjct: 31  LSSATAEVYARDVATFVRLAGEGKVLDDLTGEDVDAILLAFARKPDGRRAEPGAGLQSAS 90

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN----SLPRALNEKQALTLVDNVL 142
           S  R    + +  K+         + +       K         RAL  +QA  L+    
Sbjct: 91  SQSRFRRSVSALFKHATLTGWVQINPMALATVTAKERGGLRPERRALTREQAQGLIGAAR 150

Query: 143 L------------------------------------------HTSHETKWIDARNSAIL 160
                                                            +  + R++ I+
Sbjct: 151 DLSGHRGDGGGRGGARGEAGALGGTVAAPGAAPGADGSPAGAGRGRRRDQRTELRDALIV 210

Query: 161 YLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
            LL   G R+SE +    ++    D     RI GKG K R VPL   V + +  Y     
Sbjct: 211 LLLSTMGPRVSELVRANVEDFYTNDGVRYWRIFGKGGKTRDVPLPGDVARVLEAYLLERG 270

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSN 276
                +    L    RG+ L  G  Q  I +++R +        T H LRH+ ATHLL++
Sbjct: 271 RAEVQDK--ALLLSWRGRRLARGDVQAVIDRVQRRVDPDRRRSVTPHGLRHTTATHLLAD 328

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
             D+ +++ +LGH  L+T   Y     ++     +E+  + HP + 
Sbjct: 329 AVDMDAVRRVLGHSDLATLGRY-----RDELPGELEVAMRAHPLLR 369


>gi|256964200|ref|ZP_05568371.1| phage integrase [Enterococcus faecalis HIP11704]
 gi|256954696|gb|EEU71328.1| phage integrase [Enterococcus faecalis HIP11704]
          Length = 382

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 56/328 (17%), Positives = 112/328 (34%), Gaps = 42/328 (12%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKIT 59
           + N +P   +    +    WL+N        K T++  SY        I    +      
Sbjct: 55  QKNGIPSSTNITFQEVAFMWLENY-------KNTVKESSYSRT----EIIFRKHILPSFG 103

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
              I ++S    +  ++   ++    +     ++ +    K+     +T ++ ++N+   
Sbjct: 104 KIEISKISTAYCQKIVNTWHSEG-SSKQYPLFINYMNQVFKFAINIGVTNQNPVINVIVP 162

Query: 120 K-----KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           K      S    +   + Q    + ++      E+ +I  R+  +  LL   G RI E L
Sbjct: 163 KNQDIITSEKKIKFYTKDQLQIFLKSIEQS---ESTYITIRDYTLFRLLAFSGCRIGELL 219

Query: 175 SLTPQNIMDDQSTLRIQGK---------------GDKIRIVPLLPSVRKAILEY-YDLCP 218
           +LT  ++      L+I                      R + L       + ++  +   
Sbjct: 220 ALTWDDLNIKTGELQINKTIAKSDHYYVSNTPKTKKSNRTLILDAKTITILKKWKLEQKK 279

Query: 219 FDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
           + L L    P  +F     +              R+   LP +   H  RH+ A+ L   
Sbjct: 280 YLLKLGYTQPSRIFTNEENEFTINQAITDRYNIYRKKANLP-NIGLHGFRHTHASLLYYA 338

Query: 277 GGDLRSIQSILGHFRLSTT-QIYTNVNS 303
           G D +  Q  LGH  + TT   YT++ +
Sbjct: 339 GADHKEAQERLGHANIKTTLDTYTHLTN 366


>gi|315607470|ref|ZP_07882465.1| mobilizable transposon [Prevotella buccae ATCC 33574]
 gi|315250653|gb|EFU30647.1| mobilizable transposon [Prevotella buccae ATCC 33574]
          Length = 418

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 55/304 (18%), Positives = 110/304 (36%), Gaps = 25/304 (8%)

Query: 16  KERQNWLQNL-EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           + +QN+++   ++       +  S + +  +  + L  +  + +    I      + + F
Sbjct: 125 RLQQNFIKYFDKVADKRHHNSSLSIQTNWERVHVLLRMFAGDTLLFSQIDNRLAEDFKFF 184

Query: 75  ISKR-----RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +        +   I   +     S  K+ LK        T      ++ +++  S    L
Sbjct: 185 LLSAPCGGSKKGTISRNTASTYFSIFKAALKQAFIDGYLTIDLSAKIKGIQEQESRREYL 244

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              +      N L +T  E   +  + +A+   L   GLR  +   L    I  + +  +
Sbjct: 245 TLDEL-----NKLANTPCERDVL--KRAALFSAL--TGLRHCDIQKLKWNEIAIEGNQAK 295

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           +     K + V  +P   +A     +    +  +   LP          NP    R +R 
Sbjct: 296 LLFTQKKTKGVEYMPISEQAFKLCGEPRQPEQLVFEGLP----------NPSWISRPLRA 345

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+    + H  RH+FAT  L+NG D+ ++  +LGH  + TTQ+Y  V  +     
Sbjct: 346 WIEKAGIQKHLSFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKVVDEKKNKA 405

Query: 310 MMEI 313
              I
Sbjct: 406 ANAI 409


>gi|56130793|ref|YP_145696.1| putative integrase/recombinase protein [Ralstonia metallidurans
           CH34]
 gi|94152488|ref|YP_581895.1| tyrosine-based site-specific recombinase [Cupriavidus metallidurans
           CH34]
 gi|56068783|emb|CAI11345.1| putative integrase/recombinase protein [Cupriavidus metallidurans
           CH34]
 gi|93358858|gb|ABF12945.1| Tyrosine-based site-specific recombinase [Cupriavidus metallidurans
           CH34]
          Length = 716

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 64/361 (17%), Positives = 115/361 (31%), Gaps = 77/361 (21%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +WL  L         T ++Y  +  +FL++      + ++            R F++   
Sbjct: 364 DWLNYLS-------NTQRAYRKEAERFLLWSMLARGKPLSSMDTDDC--MAYRDFLADPP 414

Query: 80  TQKIGDRSLKR-------------------SLSGIKSFLKYLKKRKITTESNILNMRNL- 119
            +  G RS +R                   ++  + +   YL  +     +    +    
Sbjct: 415 KEWCGPRSRERWTPLWRPFEGPLNPRAQGYAIGVLANLYAYLNAKNYLAGNPWQGIHVPT 474

Query: 120 --KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             K    + R+L E Q    V   L      +  I  R    L LLY  GLR+SE ++ +
Sbjct: 475 SAKPELDVGRSLTEDQ-WAFVKGCLARLPATS--IHRRLQVALPLLYATGLRLSEVIAAS 531

Query: 178 PQN------------IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LN 224
             +              ++   L + GKG+K+R VP+  +   A+ EY +   F  +   
Sbjct: 532 TDDLEWVSLAQPGTGEREEGWWLTVIGKGNKLRRVPVPDTTVHALGEYLESRGFASDPAR 591

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS------------------------- 259
            +     G              I       GL  +                         
Sbjct: 592 CRGVALLGHATDQEERAGGWAKIDTAPAEAGLAATTLYRQIKRFFQACASELEAVDARGA 651

Query: 260 -----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
                 + H +RH+  +H L+ G  L +++   GH  L TT  Y           M + +
Sbjct: 652 SRLAAASTHWMRHTHISHALAAGAPLEAVKQNAGHASLDTTTRYVTTEDARRRAAMRKFW 711

Query: 315 D 315
           D
Sbjct: 712 D 712


>gi|257438451|ref|ZP_05614206.1| putative tyrosine recombinase XerC [Faecalibacterium prausnitzii
           A2-165]
 gi|257199030|gb|EEU97314.1| putative tyrosine recombinase XerC [Faecalibacterium prausnitzii
           A2-165]
          Length = 230

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 102/240 (42%), Gaps = 16/240 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L   R  +L + E  R L+K +L++Y   TR  + FL         I  + ++    IR 
Sbjct: 3   LKDLRDEFLYDCEC-RHLAKGSLRNYRAATRFLVDFLELRR-----ITELEEVKPHHIRD 56

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNE 131
            + +++      R +   L   +++  YL       E  +    ++ L++  ++      
Sbjct: 57  LMKEKQDMGSTPRYINDLLKVWRTWFNYLVTEGYLDERDNPAKKVKPLRQPKTIIDTFTV 116

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            +   ++          T ++  RN  I+ LL+  G+R +E + + P++I  D   ++  
Sbjct: 117 DEMRRMIRFY-----DGTDFLSVRNKTIIMLLFDTGMRCNEMILMEPEDIKPDYILVK-H 170

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLN--LNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           GKG K R+VP  P++ K +++Y  L    L    +    LF    GKPL      R ++ 
Sbjct: 171 GKGSKERVVPKSPALSKQLMKYRTLRDAYLKEYPSRHKNLFLSKNGKPLTDEAVARMLKH 230


>gi|227519034|ref|ZP_03949083.1| bacteriophage integrase [Enterococcus faecalis TX0104]
 gi|227073534|gb|EEI11497.1| bacteriophage integrase [Enterococcus faecalis TX0104]
          Length = 392

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 62/335 (18%), Positives = 128/335 (38%), Gaps = 59/335 (17%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q W +     R L++  + +Y+    Q  I   +   +K     +  LS  E++ F+   
Sbjct: 66  QKWFEYY---RSLNEQKVATYDKREEQVKILNRWIGGKK-----LSSLSSEELQKFLFIL 117

Query: 79  RTQK-------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP----- 126
           + +            SL+  +  +     Y KK+ +  E+ +  ++  K   SL      
Sbjct: 118 KEKGIDGVNVGYAKNSLQSLVQVLNMVFNYCKKKNLINENPMKFVKMPKYQLSLKDLKES 177

Query: 127 ------RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                 + L   +    ++  ++       + +   S + ++L+  G R+SEAL+L PQ+
Sbjct: 178 VNSLEDKFLTVDELRAFLNYGIV-------YEELPMSVLFHVLFYTGCRVSEALALQPQD 230

Query: 181 IMDDQSTL---------------RIQGKG--DKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
           I  +++ +               RI+        R VP+ P V + + E  D+       
Sbjct: 231 IDFERNEILFYKQTAVKGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRN 290

Query: 224 N----IQLPLF----RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
           +     +  LF     G RG P        ++++     G+      H  RH+ A+ L++
Sbjct: 291 SNFVVDETYLFVYLDPGKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMAS-LVA 349

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                  ++  LGH   +T++IY ++ S      +
Sbjct: 350 EYCSWDVLKDRLGHTDSTTSKIYRHLTSTEKLKPL 384


>gi|224827079|ref|ZP_03700176.1| integrase family protein [Lutiella nitroferrum 2002]
 gi|224600745|gb|EEG06931.1| integrase family protein [Lutiella nitroferrum 2002]
          Length = 330

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 100/279 (35%), Gaps = 38/279 (13%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           L+S     R+ L        E +      + S  +   + ++R    +   ++ R  + +
Sbjct: 76  LRSAADTLRRLLAMA-----EAMGNPVADRFSAEDFAKYRAQRLESGVTANNMNREHAYL 130

Query: 96  KSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +S    LK+  +   E+ +  +R  K        L   Q  TL+         E +    
Sbjct: 131 RSVFNELKRLGLWKKENPLAMVRQFKIPEKELSWLTVDQIQTLL--------AELENCRN 182

Query: 155 RNSAIL-YLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILE 212
           +++ ++  +    G R  EA  L          +L+  G K  K R VP+   +   +  
Sbjct: 183 KDALLVAKICLSTGARWGEAEGLRKSQ--LRNQSLQFTGTKSGKNRTVPVAEGLYDELKA 240

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFA 270
                    ++     LF                 R      GL  P     H LRH+FA
Sbjct: 241 --------KDVGSTDRLF----------QYCWGAFRDAVERCGLVLPDGQMTHVLRHTFA 282

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           +H + NGG++  +Q ILGH  L+ T  Y ++   +  + 
Sbjct: 283 SHFVMNGGNILVLQKILGHQSLTMTIRYAHLAPDHLQEA 321


>gi|313158681|gb|EFR58070.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 389

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 57/297 (19%), Positives = 110/297 (37%), Gaps = 25/297 (8%)

Query: 14  LLKERQNWLQNLEI----ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           LL+    +L +       +R  S     +Y     +   FL +  E  +     ++L   
Sbjct: 109 LLQTFDEYLADFRKRVGKDRAYSSY--DNYRKRRNRLASFLEY--EYHVKDIAFKELKRE 164

Query: 70  EIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            +  F+    T + +   ++  +L  +K       K              ++   S  R 
Sbjct: 165 FVEKFVVYLSTVKGLASGTIHSTLKKLKLMTYTAYKNGWIAADPFAGF-YVRPEYSERRY 223

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQST 187
           L+  +   ++D  L +      +    N          GL  ++ + LT  +I  DD   
Sbjct: 224 LSASELQAVIDVRLPN------YRTGINRDAFVFCAFTGLSHADVVKLTHADIHTDDNGE 277

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
             I  +  K      +  +  A + Y       L+ +   PL        ++       +
Sbjct: 278 RWIIDRRQKTGTQFRVKLLPVAEMLYERYKDMHLSGDRVFPLKGTYNTLNMS-------L 330

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           R + R+ GL  + T H  RH+FAT + L+ G  L ++  +LGH +++TTQIY  + +
Sbjct: 331 RHVARHAGLSFNPTIHLARHTFATTVTLTQGVPLETVSKMLGHKQITTTQIYAKITN 387


>gi|218262144|ref|ZP_03476706.1| hypothetical protein PRABACTJOHN_02379 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223578|gb|EEC96228.1| hypothetical protein PRABACTJOHN_02379 [Parabacteroides johnsonii
           DSM 18315]
          Length = 408

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 63/312 (20%), Positives = 132/312 (42%), Gaps = 27/312 (8%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQL 66
           ++ FE+ +E  +  + L I +  +K+T+     DT   L +      +K  ++ I  +++
Sbjct: 108 LMFFEVFQEHNDKCREL-IGKDYAKVTIS--RFDT--CLRYFKEMALKKYHLKDIPMKEI 162

Query: 67  SYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           S+  I+ +I   +T+K + + ++ R +  +K             +   +N+R  ++    
Sbjct: 163 SHAIIQDYIHFLKTRKDLQENTVIRYMKVVKKITNMALANDWMEKDPFINIRFHEQEVH- 221

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DD 184
              L +++  T+ + V      +   +D     I       GL   +   L  ++++ D+
Sbjct: 222 KEFLTKEELETMQNKVF-----DIPRLDLV-RDIFLFQCFTGLAFIDVSELKAEHLVSDN 275

Query: 185 QSTLRIQGKGDKIRIVPLLP--SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           Q  L I+    K +++  +P   +  AILE YD  P        LP+    +        
Sbjct: 276 QGNLWIRKARQKTKVMCNIPLLDIPLAILEKYDGHPLAKKKGTLLPVPCNQK-------- 327

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              Y++++     +  + T HT RH+F+T   L+N   L ++  +LGH     TQ Y  V
Sbjct: 328 LNNYLKEIADLCSIKKNLTTHTGRHTFSTVVALANNVSLENVAKMLGHTNTKMTQRYAKV 387

Query: 302 NSKNGGDWMMEI 313
             ++    M  +
Sbjct: 388 LDQSILRDMQNV 399


>gi|208969617|gb|ACI32080.1| truncated integrase IntI1 [Escherichia coli]
          Length = 232

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 91/218 (41%), Gaps = 28/218 (12%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLPTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLKEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
             T+ ++ GKG K R + L  S+  ++ E         
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWW 199


>gi|168483688|ref|ZP_02708640.1| integrase [Streptococcus pneumoniae CDC1873-00]
 gi|172042968|gb|EDT51014.1| integrase [Streptococcus pneumoniae CDC1873-00]
 gi|332205042|gb|EGJ19105.1| phage integrase family protein [Streptococcus pneumoniae GA47368]
          Length = 380

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 97/268 (36%), Gaps = 26/268 (9%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK- 121
           +R +    ++  I +          + +    +   +K+  +      + +L +   +K 
Sbjct: 107 VRNIDRRLLQKVIDQLLQDGRSHNYVSKIKFKLNQIMKFAIRMNYIDTNEMLFVETPRKV 166

Query: 122 ------SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
                      + L++K+    + N+      + +        I  +L+  G+R  E  +
Sbjct: 167 ITSDELRKKNTKYLDQKEFKLFIQNLKDEALCDYRITKYIR--IAKVLFLTGMRYGELAA 224

Query: 176 LTP-QNIMDDQSTLRIQGKGDK-------------IRIVPLLPSVRKAILEYYDLCPFDL 221
           L   ++I   + T+ I+   D               R++     V   I E   +     
Sbjct: 225 LNYKEDIDFSKKTIHIKHTYDFRQKERTTPKTIKSDRVITAPQKVLDIIKE--QIIENAT 282

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
           N      +F    G+P+        +++  + +G+  + T HT RHS  + L   G  L 
Sbjct: 283 NGFDTDFIFINTLGEPITNARVICALKRHGQKIGIEKNITTHTFRHSHISLLAELGIPLT 342

Query: 282 SIQSILGHFRLSTT-QIYTNVNSKNGGD 308
           +I   +GH    TT +IY++V  K   D
Sbjct: 343 AIMDRVGHSDSKTTLEIYSHVTQKMVSD 370


>gi|315171544|gb|EFU15561.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1342]
          Length = 309

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 85/213 (39%), Gaps = 21/213 (9%)

Query: 103 KKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
               + +++    +    +  +   S  + LN+ +   L+  + L       W       
Sbjct: 90  VDEGLISKNPTRKIVIKGKAPRPKKS--KFLNQFEVQALLKELELGEQLNWDW------- 140

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212
            + L+   GLR SEAL+LTP++    +  + I+   +         S       RK  ++
Sbjct: 141 FILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGFFQSTKNESSKRKVQID 200

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +     F   +    P+        +        ++ L +   +P+  T H+LRH+ A+ 
Sbjct: 201 WQTAMQFSQLIRNMPPMEPIFVRGRVFNSTINSRLKVLCKRAQIPV-ITVHSLRHTHASL 259

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           LL  G  + S+ + LGH  ++TTQ  Y ++  +
Sbjct: 260 LLFAGVSIASVATRLGHSSMTTTQETYLHIIQE 292


>gi|78777157|ref|YP_393472.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
 gi|78497697|gb|ABB44237.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
          Length = 392

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/288 (18%), Positives = 111/288 (38%), Gaps = 25/288 (8%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSF 98
           YE     F  ++  Y  +      I  +   +I+ + ++  T  +   S ++  S   + 
Sbjct: 104 YERKMAAFKNYVVPYFGK----TKISAIKPMDIQDWQNRLLT-TLTPSSAQKYRSIFYNI 158

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           L+     +I  ++ +  ++  K+ +      +E++ +   +N  +    E   +   N  
Sbjct: 159 LQDAFINEIIVKNPMQLVKAPKQKSKQKTLFDEEEDVMPFNNAEIKLILEDTQLFEHNKN 218

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-----------GKGDKIRIVPLLPSVR 207
              L+   G+R  EA++L  Q+I+ D+  ++I                 +R V +LP   
Sbjct: 219 FYKLMLFTGMRPGEAVALRWQDILFDKKQIKIMQTRVAGKDGTPKTMSSMRYVDILPQTL 278

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           + +L    L         +  LF    GK   +        ++L     +      + LR
Sbjct: 279 EVLLSQQKL------TGDKEYLFYTRSGKRYFSHDTLAASFKRLLTRNKIKERV-LYNLR 331

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           H+FA+ ++S G D+  +   LGH  +S T   YT    ++      ++
Sbjct: 332 HTFASQMISQGVDIVWVSKTLGHKDVSITLSTYTKFIQEDEATRFQKL 379


>gi|317501727|ref|ZP_07959915.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316896875|gb|EFV18958.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 300

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 103/298 (34%), Gaps = 34/298 (11%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           +Q    +    E+K+  ++I  +  ++ R +  + + +     ++      +K+      
Sbjct: 7   KQREQLMRLLKEDKLGARSIDTIKPSDAREWALRMKDKGFSYNTINNHKRSLKASFYIAI 66

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           +     ++      + K S  L     EK ALT      L +  +T  +  +    + +L
Sbjct: 67  QDDCVRKNPF----DFKLSEVLENDTKEKVALTEEQEQSLLSFIKTDNVYHKYYDDVLIL 122

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVR 207
              GLRISE   LT  ++      + I                      IR VPL     
Sbjct: 123 LKTGLRISELCGLTIMDVDFIHEVVVIDHQLLKSKEQGYYIETPKTKSGIRQVPLSRETI 182

Query: 208 KAILEYYDLCPFDLNL---NIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGL 256
           +A                      LF   +GKP        L   + ++Y +  +     
Sbjct: 183 QAFQRVMKKRSKAEPFVIDGRSNFLFVNHKGKPKVAIDYSTLFVRMVKKYNKHHKD--NP 240

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
               T HTLRH+F T L S   + + +Q I+GH  +S T   Y + +       +  +
Sbjct: 241 LPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQRL 298


>gi|254884996|ref|ZP_05257706.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254837789|gb|EET18098.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 407

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 114/301 (37%), Gaps = 27/301 (8%)

Query: 20  NWLQNLE-IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           N+L   +      +K  ++  +    +F  FL               ++   +  F++  
Sbjct: 122 NFLDYFQAYINSYTKKDIRMVQIALSRFKDFLKEQYPMNEFSIKPELITKEMMEQFVTYL 181

Query: 79  RTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQAL 135
           +++ +G   +S+ +     K  ++Y     +  +    ++     S  L +  L+ ++  
Sbjct: 182 QSRSVGEGAKSIYQRF---KKVIRYAIDHDVMLKDPCKSVTCKVDSQMLRKDVLSPEEIQ 238

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--GK 193
            L         H          A ++ LY CGLR  +   LT +N+      L+ +    
Sbjct: 239 KL------AACHYDNENPNVRRAFIFCLY-CGLRFCDVKDLTYKNVDYANRLLKFEQSKT 291

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
                   ++  +   +L      P D N L   LP +              + +++  +
Sbjct: 292 KGHSASSGVVIPLNDGLLSIIGETPADKNCLIFDLPTYESCC----------KSVKRWVK 341

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    + H  RHSFA ++L+NG +++++ S+LGH  L  T+ YT    K   + +  
Sbjct: 342 RAGIDKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLKEEAINS 401

Query: 313 I 313
           +
Sbjct: 402 L 402


>gi|271966967|ref|YP_003341163.1| Site-specific recombinase XerD-like protein [Streptosporangium
           roseum DSM 43021]
 gi|270510142|gb|ACZ88420.1| Site-specific recombinase XerD-like protein [Streptosporangium
           roseum DSM 43021]
          Length = 373

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 65/304 (21%), Positives = 114/304 (37%), Gaps = 31/304 (10%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           + +          WL+      G +  T ++   D   F+ +L       + +  + +  
Sbjct: 65  DALPHAEWSAVAAWLKA-----GKAVTTRRARLADVAAFVRWLQTEAP-GVELLAVTEDH 118

Query: 68  YTEIRAFIS--------KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
            T  R  I+         R    +   ++ R LS + S   Y  +R+I   +    +   
Sbjct: 119 LTHYRDTIATGTARAGLARPGTPLAASTVARRLSSLSSLYGYALRRRIVAVNPADPVERP 178

Query: 120 KKSN--SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           + S   + P A   ++A  LVD      +       A       LL  C +R+ E ++LT
Sbjct: 179 EVSTVGTTP-ARTVEEATALVDGAETIAAAYPADAAAV-----ALLSVCAVRVGELVALT 232

Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
             ++  D     +  + +G K+  +P+ P VR  +           + +   PLF    G
Sbjct: 233 VGSVAADAGHTVILFRRRGGKVDRLPVPPRVRALLEPLL------ADRSPGEPLFVRKDG 286

Query: 236 KPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           +P +       +R+     G+ P   T HT R + AT  L  G  L  +Q +LGH    T
Sbjct: 287 RPFDRWRMTTALRRAATAAGVDPTKLTPHTARATAATAALDAGVPLADVQELLGHASPVT 346

Query: 295 TQIY 298
           TQ Y
Sbjct: 347 TQRY 350


>gi|163815709|ref|ZP_02207081.1| hypothetical protein COPEUT_01890 [Coprococcus eutactus ATCC 27759]
 gi|158449014|gb|EDP26009.1| hypothetical protein COPEUT_01890 [Coprococcus eutactus ATCC 27759]
          Length = 411

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 55/345 (15%), Positives = 113/345 (32%), Gaps = 64/345 (18%)

Query: 20  NWL--QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           N+L  + +  +  L   T  +Y      F+        +    + +R + Y+++  F + 
Sbjct: 73  NFLFDRYISTKTELRSTTYSNYLYTWNHFIR-------DTFGKKKVRDVKYSDVLFFYTD 125

Query: 78  R-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM--RNLKK---SNSLPRALNE 131
               Q +   +L+   + ++   +   +  I  ++ +        K+   +    RAL  
Sbjct: 126 LINNQGLQINTLETINTVLRPTFQLAVRDDIIRKNPVDGAYCEVKKRNGGARKTRRALTV 185

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            Q    ++ V  +                  L G G RI EA+ +   +I  +   + I 
Sbjct: 186 DQQRKFMEYVAKN------PFFYHWYPFFVFLLGTGCRIGEAIGIRWDDIDLENRVIDIN 239

Query: 192 G----------------------KGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLN 224
                                       R +P++  V   + E Y+         +    
Sbjct: 240 HSLTYYQRADDSYKCEFRVSLPKTEAGNRRIPMMQQVYDVLQEEYERQKQEGFCVENVDG 299

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST---------------TAHTLRHSF 269
           +   +F    G P NP    R I+++                         + H  RH+F
Sbjct: 300 MTNFVFTNRFGMPHNPAAVNRAIKRIVDTHNSEEEVAAKKEKREPVMIPRFSCHIFRHTF 359

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
           A+    N  +++ IQ ++GH  +STT  IY   N       + ++
Sbjct: 360 ASRFCENETNIKVIQEVMGHADVSTTMNIYAEANPDVTKSVIEKL 404


>gi|314935048|ref|ZP_07842407.1| prophage L54a, integrase [Staphylococcus caprae C87]
 gi|313652978|gb|EFS16741.1| prophage L54a, integrase [Staphylococcus caprae C87]
          Length = 405

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 72/318 (22%), Positives = 131/318 (41%), Gaps = 46/318 (14%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S +T +SY+      +  +    ++ I +Q    ++   ++  I+   T+ +  + +K  
Sbjct: 92  STVTTKSYK------IAHIKRNIDKNILVQN---MNADVLQDLINSSLTEGLSHKVVKDD 142

Query: 92  LSGIKSFLKYLKKR-KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           LS IK+ ++Y +K+  IT  S I ++   KK+ ++     +++   L  N +   + E K
Sbjct: 143 LSIIKNIIRYTQKKYNITDISYIDDVIVPKKATTIEEVKAKRE-NYLEMNEVHLIAEELK 201

Query: 151 WIDARNSA------------ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            I     A            I+      G+RI E L++ P+NI      L I G     +
Sbjct: 202 RIANNKRASYMKRSYLFTAYIIEFQVLNGMRIGELLAIQPENIDFKNKKLIIDGTIHWRK 261

Query: 199 IVPL----------------------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
                                        +RK +LE      ++     +  +F   RG 
Sbjct: 262 ERNNVGFKDTTKTASSYRTISLTTRSCDILRKVMLENKKAVQWEKMYVDRDFIFTNHRGN 321

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT- 295
           PL+     R I+   + +G+    T+HT+RHS  + L   G  LR+I   +GH    TT 
Sbjct: 322 PLSLTSINRNIQIAAKNVGIEKHITSHTMRHSHISLLSQLGISLRAIMDRVGHTDHKTTL 381

Query: 296 QIYTNVNSKNGGDWMMEI 313
           QIY++V  +   D M ++
Sbjct: 382 QIYSHVTEQMDKDMMNKL 399


>gi|237727393|ref|ZP_04557874.1| site-specific recombinase [Bacteroides sp. D4]
 gi|313146590|ref|ZP_07808783.1| site-specific recombinase [Bacteroides fragilis 3_1_12]
 gi|229434249|gb|EEO44326.1| site-specific recombinase [Bacteroides dorei 5_1_36/D4]
 gi|313135357|gb|EFR52717.1| site-specific recombinase [Bacteroides fragilis 3_1_12]
          Length = 378

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 55/294 (18%), Positives = 114/294 (38%), Gaps = 23/294 (7%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD--R 86
           +  ++ T+  YE   R    F++     K+    ++ ++Y  I  F    + QK      
Sbjct: 101 KEYAEGTVLRYERTARYLKEFISEQY--KLADIPLKSINYEFITKFEHFIKIQKNCAQNA 158

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++K  L  +K  +K    +K  T+     +   K++      LNE +   +++       
Sbjct: 159 TVK-YLKNLKKIIKTALIKKWITDDPFAEIH-FKQTKCNREFLNEMELRKIINKDFDIQR 216

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRIQGKGDKIRIVPLL 203
            +T         I       GL  ++  +L  ++     + +  +R   +         L
Sbjct: 217 LQTV------RDIFIFCCFTGLAFTDVKNLKKEHLVQADNGEWWIRKAREKTDNMCDIPL 270

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
             + + ILE Y   P      + LP+    R           Y++++    G+  + + H
Sbjct: 271 LDIPRLILEKYQSNPICNEKGLLLPVPSNQRM--------NSYLKEIADVCGIQKNLSTH 322

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
             RH+FA+  ++N   L SI  +LGH  + TT+IY  + +    + M  + ++ 
Sbjct: 323 IARHTFASLAIANKVSLESIAKMLGHTDIRTTRIYAKIMNSTIANEMKVLQNKF 376


>gi|293373745|ref|ZP_06620092.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292631400|gb|EFF50031.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 423

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 109/302 (36%), Gaps = 32/302 (10%)

Query: 26  EIERGL-----SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRR 79
           E+E+       S  T   Y         FL   Y  + I ++ +     T+   F+  R 
Sbjct: 119 EMEKQYKAGMKSLSTYTKYRIGCAYVGEFLQTHYHVKDIALKELSLPFITDYETFL--RT 176

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +   S    +  +++ +      +   +         K+  +    L++++   L++
Sbjct: 177 DKHLKINSAMVFVRNLRAMVFRAIDNEWLVKDPFRRYE-YKEEETTREFLSKEEIHLLME 235

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKGD 195
             +      T+   +    +       GL   +  +L  +N      + +  +  + K  
Sbjct: 236 TPI------TRKKMSMVRDLFLFCCFTGLAFIDLYNLKEENIKEFFDEGEWIVIHRQKTG 289

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
               + LL   ++ + +Y  LC              G      N       +++L +  G
Sbjct: 290 TEANIKLLDYPKQIMEKYRGLCED------------GRVFPVPNYQSCMDSLKRLGKKCG 337

Query: 256 LPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           +    + H  RHSFAT   LSNG  + ++ S+LGH  + TTQ+Y  +  +     + ++ 
Sbjct: 338 ITKPLSWHMSRHSFATSVCLSNGVPIETVSSMLGHKDIKTTQVYAKITKEKLSKDVEKLS 397

Query: 315 DQ 316
            Q
Sbjct: 398 QQ 399


>gi|225420366|ref|ZP_03762669.1| hypothetical protein CLOSTASPAR_06711 [Clostridium asparagiforme
           DSM 15981]
 gi|225040985|gb|EEG51231.1| hypothetical protein CLOSTASPAR_06711 [Clostridium asparagiforme
           DSM 15981]
          Length = 285

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 56/302 (18%), Positives = 116/302 (38%), Gaps = 34/302 (11%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           ++R  + +    +RG S  T+ +Y         +L       ++++++      + R ++
Sbjct: 11  EQRLEYFKERLRQRGASANTINTYARSL-----WLYESLYGNLSLESLN-----DYRNYL 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLKKSNS--LPRALNEK 132
                      +    + G+  +LK L++     E      +  +K  +   L   ++++
Sbjct: 61  IA----HYKPSTANSRIYGMNQYLKLLEQNG--AEIPAGYQLAAVKLQHRPFLDNVISQR 114

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L     L   H   W       +++ L   G RISE L +  ++I      + +  
Sbjct: 115 DYERL--KRGLKEDHNVFW-----YFVVHFLGSTGARISELLQIKAEHI--RMGYMDLYS 165

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K+R V    ++ +  L++ +             +F    G P         ++ L R
Sbjct: 166 KGGKVRRVYFPEALCRDALDWLETRGLQTG-----FVFTNRNGAPFTARGISSQLKVLAR 220

Query: 253 YLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              + P +   H+ RH FA + LS   D+  +  ++GH  + TT+IY   +S      + 
Sbjct: 221 RYRINPDTVYPHSFRHRFAKNFLSRFNDIALLADLMGHDSIETTRIYLTRSSNEQRAIID 280

Query: 312 EI 313
           EI
Sbjct: 281 EI 282


>gi|152971805|ref|YP_001336914.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|330011065|ref|ZP_08306977.1| type 1 fimbriae regulatory protein FimE [Klebsiella sp. MS 92-3]
 gi|150956654|gb|ABR78684.1| recombinase involved in phase variation; regulator for fimA
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|158267621|gb|ABW24952.1| FimE [Klebsiella pneumoniae]
 gi|257479866|gb|ACV60169.1| FimE [Klebsiella pneumoniae]
 gi|328534296|gb|EGF60909.1| type 1 fimbriae regulatory protein FimE [Klebsiella sp. MS 92-3]
          Length = 188

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 61/156 (39%), Gaps = 1/156 (0%)

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLL 203
            +        R+  ++ L +  G+RISE L L   ++   +  + ++  K     I PL 
Sbjct: 3   QAARQGPTGERDYCLILLAFRHGMRISELLDLHYHDLDLHEGRVNVRRLKNGFSTIHPLR 62

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              R+AI  +  +       +    LF   RG  L+     R IR      G    T  H
Sbjct: 63  FDEREAIERWSLVRAGWKAADKTDALFISRRGTALSRQQAYRIIRSAGENAGTVTHTHPH 122

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            LRH+    L   G D R IQ  LGH  +  T  YT
Sbjct: 123 MLRHACGYELAERGTDTRLIQDYLGHRNIRHTVRYT 158


>gi|265763426|ref|ZP_06091994.1| transposase [Bacteroides sp. 2_1_16]
 gi|263256034|gb|EEZ27380.1| transposase [Bacteroides sp. 2_1_16]
          Length = 308

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 103/268 (38%), Gaps = 28/268 (10%)

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLKKSNS 124
           L    ++ F+ ++    +  +S+K  L  +K  +K+  K +        +   +   +  
Sbjct: 47  LHEQAVQDFVLRKIENGMSVKSVKDILIVLKMVMKFGVKNEWMDYQEWDIKYPSPSITKE 106

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           L   L+      ++ ++  H S             +Y+    GLRI E  +L   +I   
Sbjct: 107 L-EVLSVANHKKILSHIQSHFSFAGLG--------IYISLCTGLRIGEVCALKWSDINVS 157

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAIL----------------EYYDLCPFDLNLNIQLP 228
           + T+ +    ++I I+  +    + ++                E   +      +  +  
Sbjct: 158 EGTITVNRTIERIYIINGMEKHTELVINTPKTQNSCREIPITKELLAMVKPLKKVVNEEF 217

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
                   P  P  ++ Y  +L   LG+P     H LRHSFAT  +  G D +++  +LG
Sbjct: 218 YVLTNDEYPTEPRTYRNYYGKLMAKLGIPK-LKYHGLRHSFATRCIEAGCDYKTVSVLLG 276

Query: 289 HFRLSTT-QIYTNVNSKNGGDWMMEIYD 315
           H  +STT  +Y + N +     + +++ 
Sbjct: 277 HSNISTTLDLYVHPNMEQKKRCIAKVFK 304


>gi|211908034|gb|ACJ12493.1| integrase [Pseudomonas aeruginosa]
          Length = 180

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 86/199 (43%), Gaps = 28/199 (14%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVNWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPL 202
             T+ ++ GKG K R + L
Sbjct: 162 HGTIIVREGKGSKDRALML 180


>gi|153815667|ref|ZP_01968335.1| hypothetical protein RUMTOR_01903 [Ruminococcus torques ATCC 27756]
 gi|145846908|gb|EDK23826.1| hypothetical protein RUMTOR_01903 [Ruminococcus torques ATCC 27756]
          Length = 376

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/317 (15%), Positives = 110/317 (34%), Gaps = 42/317 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              W     I  G+ K T++S     R +        +  I    +  +     +     
Sbjct: 68  VDQWFDY-WI--GIKKKTVRS--NTVRNYTERYIKNIKPVIGEMPLSDVKPLHCQKIFYD 122

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP----RALNEKQ 133
              Q+    ++ ++   + +  +Y K+ ++   +     +++K     P     AL    
Sbjct: 123 MADQEYRTSTIYQARIALYNMFEYAKENEVLCSNPCK--KSVKSDMGKPSEKKVALTRDI 180

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
             T +         E +  + +   IL      GLR  E + L  +++     T++I+  
Sbjct: 181 QKTFLQY------AENQSYENQYRFILQ----TGLRTGELVGLKWEDVDFKSKTIQIRRS 230

Query: 194 GDK-----------------IRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIR 234
            +                   R +PL       + +    +    +++   +  +F   +
Sbjct: 231 MEYRYSAKEWRIGEPKSKSGYRTIPLTEEAVAILKKQKEKNKRISEISTEWEEFVFLCRK 290

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           G P+    +   + ++     +P   + H LRH+FAT  +  G   +++Q +LGH  +  
Sbjct: 291 GTPVKNSTYDTALFKICDKAKIPR-FSMHILRHTFATRCIEAGMKPKTLQMLLGHSNIGI 349

Query: 295 TQ-IYTNVNSKNGGDWM 310
           T  +Y +   +     M
Sbjct: 350 TMNLYVHTTEEEKKKEM 366


>gi|16763108|ref|NP_458725.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|29144590|ref|NP_807932.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56414704|ref|YP_151779.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197363631|ref|YP_002143268.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|213426678|ref|ZP_03359428.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|213586423|ref|ZP_03368249.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
 gi|213855469|ref|ZP_03383709.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
 gi|25301805|pir||AI1039 phage integrase [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16505416|emb|CAD06766.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29140228|gb|AAO71792.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56128961|gb|AAV78467.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197095108|emb|CAR60654.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 341

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 61/315 (19%), Positives = 108/315 (34%), Gaps = 53/315 (16%)

Query: 19  QNWLQNLEIERGLSK-----LTLQSYECDTRQFLIFLAFYTE--EKITIQTIRQLSYTEI 71
           + WL   E  R LS+      +L  Y          LA  +     +      +L+  + 
Sbjct: 49  KPWLGEKEDRRHLSEVIEQWHSL--YGQTLADPKRLLAKLSIICNGLGDPIASELTAGDF 106

Query: 72  RAFISKRRTQKIG-----------DRSLK---RSLSGIKSFLKYLKKRKITTESNILNMR 117
             +   R   ++             R++    R+LS +  F    K       + +  + 
Sbjct: 107 TKYREARLKGEVKNEDGVLMSPVKPRTVNLEQRNLSSV--FGTLKKLGHWPAPNPLAGLP 164

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             K +      L  ++   L+D      S            I  +    G R SEA +L 
Sbjct: 165 TFKIAEGELAFLAPEEIKRLLDACADSQS-------PSLLMIAKICLATGARWSEAENLQ 217

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
             + +        + KG K R VP+   +   +                 P  RG    P
Sbjct: 218 -GHQLSKYRITYTKTKGKKNRTVPISQELYDEL-----------------PKNRGKLFTP 259

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
                F+R +++      LP     H LRH+FA+H + NGG++  ++ ILGH  +  T +
Sbjct: 260 C-RKSFERAVKRAGIE--LPEGQCTHVLRHTFASHFMMNGGNILVLRDILGHADIKMTMV 316

Query: 298 YTNVNSKNGGDWMME 312
           Y +    +  D + +
Sbjct: 317 YAHFAPDHLEDAVTK 331


>gi|332706864|ref|ZP_08426925.1| site-specific recombinase XerD [Lyngbya majuscula 3L]
 gi|332354748|gb|EGJ34227.1| site-specific recombinase XerD [Lyngbya majuscula 3L]
          Length = 233

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 94/236 (39%), Gaps = 19/236 (8%)

Query: 92  LSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNS-LPR--ALNEKQALTLVDNVLLHTSH 147
           ++ ++  L   KK K+   E     +   +  N  LPR  AL + +   L+       + 
Sbjct: 1   MAALRGVLAVAKKLKLMQAEDYEAAVDLPRIKNHPLPRGRALTQTEITALIKVC----AS 56

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
           +T    AR++A++ +L G GLR +E + L  ++       L ++ GKG K R V L  + 
Sbjct: 57  DTTNQGARDTALIGILRGAGLRRAEVVKLEVRDFDGSTGALEVRQGKGGKDRTVYLPENA 116

Query: 207 R-KAILEYYDLCPFDLNLNIQLP-------LFRGIRGKP-LNPGVFQRYIRQLRRYLGLP 257
             K  L         LN     P       L  G      + P      +++  +  G+ 
Sbjct: 117 IAKRRLCRIAFVNDWLNTRGSQPGALLCPILKGGQIQNRNMTPQAVLLILQKRAKQAGVE 176

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            S + H    +F + LL  G D+ ++Q + GH    TT  Y     +     + ++
Sbjct: 177 -SFSPHDFPRTFCSDLLDAGIDIVTVQKLAGHASPVTTAKYDRRGEEVKRRAVQKL 231


>gi|315181198|gb|ADT88112.1| phage integrase family protein [Vibrio furnissii NCTC 11218]
          Length = 395

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 91/264 (34%), Gaps = 19/264 (7%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           L  +   K   + +  +   +I+  +     +     ++ R  S +    +   +     
Sbjct: 132 LKLHFYPKWGKKPLTDIGQQDIQKLLDGLL-EGRKPATVNRLRSLVLRMFRLAMEWGFVD 190

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
           ++    +R LK++N   R L+  +    +       +             L      G+R
Sbjct: 191 KNPGQYIRKLKENNVRQRFLSRAEVSRFIKACNEEPNRTQSNA-------LKFALLTGMR 243

Query: 170 ISEALSLTPQ----NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           I E  S   +    +   + S      K    R V L    ++ I +             
Sbjct: 244 IGEITSSKWECLTVDDDGNWSLFLPHTKSGLSRTVLLNQLAKEVIHD-----QRRFQQPK 298

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG-GDLRSIQ 284
              +F G           ++   ++++  G+  +   H LRHSFA+ L+++G   L  +Q
Sbjct: 299 NPYIFAGDAPGR-PIAHPKKAFARIKKAAGITDNFRIHDLRHSFASILINSGNATLYDVQ 357

Query: 285 SILGHFRLSTTQIYTNVNSKNGGD 308
            +LGH    T+  Y ++ S    +
Sbjct: 358 HLLGHQSPQTSTRYAHLASSRLRE 381


>gi|262382217|ref|ZP_06075355.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262297394|gb|EEY85324.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 310

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/304 (15%), Positives = 112/304 (36%), Gaps = 40/304 (13%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L++  + ++  L ++   S  T +SY+     F+ F        + +     ++   +R
Sbjct: 5   DLVEGMRLYIYKLRVDGRYS--TAKSYQDALNSFMRFCG------LEVIPYIYVNKENLR 56

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN------ILNMRNLKKSNSLP 126
            + +    +     ++   +  I+       +  +              + + K+  +LP
Sbjct: 57  RYQAFLLNKGCTWNTVSTYMRRIRCVYNMAVEEGLAPYIPYLFKGVFTGIES-KRKKALP 115

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L        +D+  L  + +         A+  +   CG+   +   L  +N+     
Sbjct: 116 QDLLRSLMTAPLDDPELRKTRQ---------ALCLMFQFCGMAFVDFAHLKKENVRGGVL 166

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP------ 240
             + + K     ++ +  +  +++ E       D        LF  ++G  +        
Sbjct: 167 EYK-RQKTGTPMLIEVQSTAWESLRELSSDVGKD-----SPYLFPFLKGIKVGKEAYKEY 220

Query: 241 ----GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
                 F R +++L R  G+ +  T++++RHSFA  L      +  I  +LGH  + TTQ
Sbjct: 221 TSALAHFNRNLKRLARACGVSIPITSYSIRHSFAMILKEQDVPIEMISELLGHKSIKTTQ 280

Query: 297 IYTN 300
           IY  
Sbjct: 281 IYLK 284


>gi|256960370|ref|ZP_05564541.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|293384343|ref|ZP_06630228.1| DNA integration/recombination/inversion protein [Enterococcus
           faecalis R712]
 gi|293388421|ref|ZP_06632929.1| DNA integration/recombination/inversion protein [Enterococcus
           faecalis S613]
 gi|312908543|ref|ZP_07767487.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|312908987|ref|ZP_07767849.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|256950866|gb|EEU67498.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|291078335|gb|EFE15699.1| DNA integration/recombination/inversion protein [Enterococcus
           faecalis R712]
 gi|291082196|gb|EFE19159.1| DNA integration/recombination/inversion protein [Enterococcus
           faecalis S613]
 gi|310625510|gb|EFQ08793.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|311290687|gb|EFQ69243.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|315169211|gb|EFU13228.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1341]
          Length = 309

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 85/213 (39%), Gaps = 21/213 (9%)

Query: 103 KKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
               + +++    +    +  +   S  + LN+ +   L+  + L       W       
Sbjct: 90  VDEGLISKNPTRKIVIKGKAPRPKKS--KFLNQFEVQALLKELELGEQLNWDW------- 140

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212
            + L+   GLR SEAL+LTP++    +  + I+   +         S       RK  ++
Sbjct: 141 FILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGFFQSTKNESSKRKVQID 200

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +     F   +    P+        +        ++ L R   +P+  T H+LRH+ A+ 
Sbjct: 201 WQTAMQFSQLIRNMPPMEPIFVKGRVFNSTINSRLKVLCRRAQIPV-ITVHSLRHTHASL 259

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           LL  G  + S+ + LGH  ++TTQ  Y ++  +
Sbjct: 260 LLFAGVSIASVATRLGHSSMTTTQETYLHIIQE 292


>gi|150008234|ref|YP_001302977.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|255015378|ref|ZP_05287504.1| integrase [Bacteroides sp. 2_1_7]
 gi|256839485|ref|ZP_05544994.1| integrase [Parabacteroides sp. D13]
 gi|298375193|ref|ZP_06985150.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_19]
 gi|301309266|ref|ZP_07215210.1| tyrosine site-specific recombinase [Bacteroides sp. 20_3]
 gi|149936658|gb|ABR43355.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|256738415|gb|EEU51740.1| integrase [Parabacteroides sp. D13]
 gi|298267693|gb|EFI09349.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_19]
 gi|300832948|gb|EFK63574.1| tyrosine site-specific recombinase [Bacteroides sp. 20_3]
          Length = 310

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/304 (15%), Positives = 112/304 (36%), Gaps = 40/304 (13%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L++  + ++  L ++   S  T +SY+     F+ F        + +     ++   +R
Sbjct: 5   DLVEGMRLYIYKLRVDGRYS--TAKSYQDALNSFMRFCG------LEVIPYIYVNKENLR 56

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN------ILNMRNLKKSNSLP 126
            + +    +     ++   +  I+       +  +              + + K+  +LP
Sbjct: 57  RYQAFLLNKGCTWNTVSTYMRRIRCVYNMAVEEGLAPYIPYLFKGVFTGIES-KRKKALP 115

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L        +D+  L  + +         A+  +   CG+   +   L  +N+     
Sbjct: 116 QDLLRSLMTASLDDPELRKTRQ---------ALCLMFQFCGMAFVDFAHLKKENVRGGVL 166

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP------ 240
             + + K     ++ +  +  +++ E       D        LF  ++G  +        
Sbjct: 167 EYK-RQKTGTPMLIEVQSTAWESLRELSSDVGKD-----SPYLFPFLKGIKVGKEAYKEY 220

Query: 241 ----GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
                 F R +++L R  G+ +  T++++RHSFA  L      +  I  +LGH  + TTQ
Sbjct: 221 TSALAHFNRNLKRLARACGVSIPITSYSIRHSFAMILKEQDVPIEMISELLGHKSIKTTQ 280

Query: 297 IYTN 300
           IY  
Sbjct: 281 IYLK 284


>gi|148654999|ref|YP_001275204.1| integron integrase [Roseiflexus sp. RS-1]
 gi|148567109|gb|ABQ89254.1| integron integrase [Roseiflexus sp. RS-1]
          Length = 319

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 58/310 (18%), Positives = 106/310 (34%), Gaps = 64/310 (20%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRS 87
           RG S  T ++Y     +F+ F          ++    +   E+ AF++     +++   +
Sbjct: 17  RGYSIRTEKAYLHWYERFVRFHK--------LRHPAAMGAPEVEAFLTHLAACEQVSAST 68

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR--ALNEKQALTLVDNVLLHT 145
             ++L+ +    +            + ++  L+   S      L+  + L ++       
Sbjct: 69  QNQALAALLFLYQ------EVLAIPLGDVHALRAKKSTYVQPYLSHDECLRILAE----- 117

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
                 +D     +  LLYG GLR+ EAL L  Q++  + S + ++        V  LP 
Sbjct: 118 ------LDGTPYLVACLLYGSGLRLLEALRLRIQDLDVENSLITVRNTKSNRDRVTFLPD 171

Query: 206 VRKAILE------------------------------------YYDLCPFDLNLNIQLPL 229
             + +                                      +     F        P 
Sbjct: 172 EERFLQRLRAHLEGVRRLYEVHLDVPVSMPPALARKYPGAATSWEWQYVFPSRDLSVDPR 231

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
              ++   L+P   Q+ I       G+    TAHTLR +FA  L   G  L  IQ ++GH
Sbjct: 232 TLVVKRHHLHPSGVQKAITAAVHAAGMTKRATAHTLRAAFAHRLKEAGYQLDDIQQLMGH 291

Query: 290 FRLSTTQIYT 299
             + TTQ Y 
Sbjct: 292 ADIRTTQHYL 301


>gi|291084894|ref|YP_003495177.1| gp36 [Mycobacterium phage Ardmore]
 gi|262262730|gb|ACY39918.1| gp36 [Mycobacterium phage Ardmore]
          Length = 372

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 58/314 (18%), Positives = 111/314 (35%), Gaps = 36/314 (11%)

Query: 4   NNLPEIVSFEL--LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           N  P     EL   +  ++ + +L    G+ + T+  YE        +LA   E  +   
Sbjct: 62  NPAPRGTKSELTVAEWIRHHIDHLT---GVEQYTIDKYE-------QYLANDIEPNLGDI 111

Query: 62  TIRQLSYTEIRAFISKRRT------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
            + +LS  +I  ++    T           ++L+     +   L     R   + +    
Sbjct: 112 PLSKLSEEDIARWVKVMETTGGRDGNGHAPKTLRNKYGFLSGALNAAVPR-YLSTNPAAG 170

Query: 116 MRNLKKSNSLPR--ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
                    LPR  A ++ +   L                     ++  +   GLR  E 
Sbjct: 171 -------RRLPRGDAEDDDEIRMLTHAEFDRLRDAVTPHW---KMMVQFMVSTGLRWGEV 220

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPL--LPSVRKAILEYYDLCPFDLNLNIQ-LPLF 230
            +L P+++  + ST+R++          +   P  +++             L++    +F
Sbjct: 221 SALQPKHVDLETSTIRVRQAWKYSSAGYVLGPPKTKRSRRTVDVPARLLERLDLSNEFVF 280

Query: 231 RGIRGKPLN-PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
               G P+  PG  +R         GL    T H LRH++A+  L+ G  +  +   LGH
Sbjct: 281 VNTDGGPVRYPGFLRRVWNPAVEKAGLVPRPTPHDLRHTYASWQLTGGTPVTIVSRQLGH 340

Query: 290 FRLSTT-QIYTNVN 302
             +  T   YT+V+
Sbjct: 341 ESIQITVDTYTDVD 354


>gi|268611397|ref|ZP_06145124.1| phage integrase family site specific recombinase [Ruminococcus
           flavefaciens FD-1]
          Length = 357

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 61/311 (19%), Positives = 127/311 (40%), Gaps = 37/311 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +NWL  +++   LS     +Y     ++      +   +     I +++   I  FIS +
Sbjct: 66  ENWLSGVKLRCKLS-----TY----NKYFSTYQNHLLPEFRGLRISEMNSKRIEGFISGK 116

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               + D++    LS +K  +K+ +      ++ I ++ ++++S +  R L  ++ + L 
Sbjct: 117 TD--LSDKTRTDILSMLKQIMKFAEHSGFYVDNTISDL-SVRRSVNEIRVLTLQEQIRLE 173

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           + +L   S  T          +YL    GLRI E  +L   +I  D   + I G   ++R
Sbjct: 174 NYLLSCDSLITTG--------IYLTLYTGLRIGELCALKRSDIDLDSGMIHISGTMQRLR 225

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---------------LNPGVF 243
           I  ++   +  I E    C        +  L                       + P + 
Sbjct: 226 IDTMISRTQVMITEPKSKCSIRDIPIPKAILNVCRMYYYNMPDHCFLLTGDETYIEPRLL 285

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN 302
             + ++  +   L  +   HTLRH+FAT  +  G D++S+  ILGH+ ++ T   Y + +
Sbjct: 286 SYHFKKCTKACDLE-NIHYHTLRHTFATRCIERGVDVKSLSEILGHYDVNVTLNRYVHPS 344

Query: 303 SKNGGDWMMEI 313
           ++     + ++
Sbjct: 345 TELKIKNIEKL 355


>gi|254472511|ref|ZP_05085911.1| phage integrase [Pseudovibrio sp. JE062]
 gi|211958794|gb|EEA93994.1| phage integrase [Pseudovibrio sp. JE062]
          Length = 365

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 54/280 (19%), Positives = 101/280 (36%), Gaps = 28/280 (10%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI-------------GDRSLKRSLSGIK 96
           +  + +  I    +  +    +R  + K     +             G  +  R++  + 
Sbjct: 88  IERHIKPVIGDLLVSDIKANHVRTLLKKVAEGNLPREGVGPVADKLGGKGTASRTVGLLG 147

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
               +  +    T++ +  ++      +  R L + +   L +   L    E    + + 
Sbjct: 148 GIFSFANELGYRTDNPVHGVKRFPDQKNQ-RYLTQSELTRLFE---LLEEIEADGANPKA 203

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
             I+ LL   G R  E   L    +  +Q TL  +      + +P+  +V   + E    
Sbjct: 204 VKIIKLLALTGARRGEIEQLKWSEVFLEQGTLHFEDSKTGQKSIPISAAVIGLLREAEQE 263

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
              D        +F   RG     G   +  R LR   G       H LRHSFA+  ++ 
Sbjct: 264 RCID-----SPYVFPSERGDGFYVGA-TKVWRDLRTKFG-DEKLRMHDLRHSFASLAVAG 316

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           G  L  I ++LGH   +TTQ Y ++++    D +  I DQ
Sbjct: 317 GASLPMIGALLGHKDTATTQRYAHLSA----DPLRSISDQ 352


>gi|116625064|ref|YP_827220.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116228226|gb|ABJ86935.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 406

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 58/327 (17%), Positives = 106/327 (32%), Gaps = 47/327 (14%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL--SYTEI 71
           L      WL+ L I+   +  T +SY  D       L  +  E +    + ++       
Sbjct: 70  LRDWLNEWLE-LFIKPNRAPKTYKSY-HDL------LKQHVPENVGSIPLSRVAQQPETF 121

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           +A         +G  S     + ++S L    K K    + IL    +   +      + 
Sbjct: 122 QALFVSIAQDGLGRTSQLLR-AVLRSSLNRAVKLKRLESNPILGTDAVGFVSGETAVFSG 180

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           +Q    +                R  A+       GLR  E   L  +++  +  T+ ++
Sbjct: 181 EQGKQFL----------KTAEGERLGALFVTALSLGLRKGELTGLREEDLDLEGRTIEVR 230

Query: 192 G--------------------KGDKIRIVPLLPSVRKAILEYYDLCPFDL-----NLNIQ 226
                                K    R +P+  ++ + ++ +      +      +    
Sbjct: 231 RQLQWIKLPGDEEGRWVERAPKKGSQRTLPITETIYRFVIRHLAQRNAEALAAGESWKDS 290

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
             LF    G PL+             + G+P     H  RHS  T L   G D   IQ +
Sbjct: 291 GYLFVSPNGAPLHERNISEAFHLACDHAGVPR-IRFHDTRHSCGTLLHLQGADPFIIQKV 349

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           LGH +LSTT+ YT+   +     +  +
Sbjct: 350 LGHSQLSTTRRYTHTPIEVTRPALARL 376


>gi|304382315|ref|ZP_07364820.1| integrase [Prevotella marshii DSM 16973]
 gi|304336554|gb|EFM02785.1| integrase [Prevotella marshii DSM 16973]
          Length = 430

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 54/312 (17%), Positives = 111/312 (35%), Gaps = 29/312 (9%)

Query: 8   EIVSFELLKERQNWLQNL--EIERGL-SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTI 63
           E     L+    ++L +   ++E GL SK TLQ Y    +    FL   +    I ++ I
Sbjct: 120 EYRKHTLITLYDDFLTDYAQKVECGLKSKRTLQKYHAVYKHLKSFLQTRHHLSDIALKEI 179

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           +    T+   F+       +   ++      ++  +    +          +  N+ +  
Sbjct: 180 QPTFATDFETFL--LTYCHLSHNTVWLYSFPVRMLMHRAVENGWLVRYPFSDY-NISQQR 236

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--- 180
                L +++   L+D   L               +       GL   +  +L  +N   
Sbjct: 237 PERVFLTKEEIRQLIDVPKL------TPTQTFIRDMFLFCTFTGLAYIDLKNLREENIVR 290

Query: 181 -IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
             +D    +R + +   +    +   +    L+  D      N     P+   +    L 
Sbjct: 291 SPLDGDVWIRTRRQKTNV---EVNVKLLDIPLQILDKYSGLSNNGCLFPIPSHVYCCNL- 346

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIY 298
                  ++ + +  G+    T H  RH+ AT   LSNG  + S+  +LGH  +++TQIY
Sbjct: 347 -------LKTIIKKCGIDKHVTWHVARHTMATVVCLSNGMPIESVSCLLGHKCITSTQIY 399

Query: 299 TNVNSKNGGDWM 310
             + ++  G  +
Sbjct: 400 AKITNEKLGREI 411


>gi|319936245|ref|ZP_08010665.1| integrase [Coprobacillus sp. 29_1]
 gi|319808819|gb|EFW05352.1| integrase [Coprobacillus sp. 29_1]
          Length = 385

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 54/298 (18%), Positives = 103/298 (34%), Gaps = 34/298 (11%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           +Q    +    E+K+  ++I  +  ++ + +  + + +     ++      +K+      
Sbjct: 92  KQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMKDKGFSYNTINNHKRSLKASFYIAI 151

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           +     ++      + K S  L     EK ALT      L +  +T  +  +    + +L
Sbjct: 152 QDDCVRKNPF----DFKLSEVLENDTKEKVALTEEQEQALLSFIKTDNVYHKYYDDVLIL 207

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVR 207
              GLRISE   LT  +I      + I                    + IR VPL     
Sbjct: 208 LKTGLRISELCGLTVADIDFKNEVVVIDHQLLKSKEQGYYIETPKTKNGIRQVPLSRETI 267

Query: 208 KAILEYYDLCPFDLNL---NIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGL 256
           +A             +     +  LF   +G P        L   + ++Y +        
Sbjct: 268 QAFQRVIRKRTKGKLIEIDGYKDFLFINPKGNPKVAIDYNALFVRMVKKYNKHHED--NP 325

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
               T HTLRH+F T L     + + +Q I+GH  +S T   Y + +       +  +
Sbjct: 326 LPHITPHTLRHTFCTRLAGRNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQRL 383


>gi|294778532|ref|ZP_06743955.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294447794|gb|EFG16371.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 403

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 64/295 (21%), Positives = 111/295 (37%), Gaps = 29/295 (9%)

Query: 27  IERG-LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIG 84
           +E+G  +K T   Y      F  FL  + ++K T    ++L+   I  F    R  + + 
Sbjct: 98  VEKGQRAKSTYNKYLAVYNHFKTFL--WEKKKRTDMAYKELTKEIITDFDKYLRVEKGLS 155

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +L      + S      +R I          +L+   +    L E++  TL + V + 
Sbjct: 156 ANTLWIYTMPLLSLTDKAWRRGIVRTDPFGEY-SLEMQETDRGYLTEEELRTLANAVFV- 213

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ-----NIMDDQSTLRIQGKGDKIRI 199
                K        +       GL   +  +LT       +   ++  +  + K      
Sbjct: 214 -----KKQTNLVRDMFLFGCFTGLSYIDIKTLTHDKIQRMDFDGEEWIITRRTKTRVSSN 268

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPL+   ++ I  Y  L   DL       +F        +  V   +++Q+ +  G+   
Sbjct: 269 VPLMEIAKELIERYRGLAGGDL-------VFPMP-----SNSVCNTHLKQIAKACGIHKE 316

Query: 260 TTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              H  RH+FAT   L NGG + ++  ILGH  +STTQIY  V ++        I
Sbjct: 317 IGFHLSRHTFATTVYLCNGGTIEALSKILGHKHISTTQIYAEVTNRMVSSDFRAI 371


>gi|187736876|ref|YP_001816614.1| IntI1 [Escherichia coli 1520]
 gi|124557910|gb|ABN13923.1| class 1 integrase [Escherichia coli]
 gi|172051458|emb|CAP07800.1| IntI1 [Escherichia coli]
          Length = 232

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 91/218 (41%), Gaps = 28/218 (12%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLPTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
             T+ ++ GKG K R + L  S+  ++ E         
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWW 199


>gi|29376385|ref|NP_815539.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|227553657|ref|ZP_03983706.1| bacteriophage integrase [Enterococcus faecalis HH22]
 gi|256619313|ref|ZP_05476159.1| phage integrase [Enterococcus faecalis ATCC 4200]
 gi|256961658|ref|ZP_05565829.1| phage integrase [Enterococcus faecalis Merz96]
 gi|256964874|ref|ZP_05569045.1| phage integrase [Enterococcus faecalis HIP11704]
 gi|257090143|ref|ZP_05584504.1| phage integrase [Enterococcus faecalis CH188]
 gi|293383362|ref|ZP_06629275.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis R712]
 gi|293388986|ref|ZP_06633471.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis S613]
 gi|294614272|ref|ZP_06694191.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1636]
 gi|307272962|ref|ZP_07554209.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0855]
 gi|307275714|ref|ZP_07556854.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|312903582|ref|ZP_07762762.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|312907810|ref|ZP_07766801.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|312910429|ref|ZP_07769276.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|29343848|gb|AAO81609.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
 gi|227177214|gb|EEI58186.1| bacteriophage integrase [Enterococcus faecalis HH22]
 gi|256598840|gb|EEU18016.1| phage integrase [Enterococcus faecalis ATCC 4200]
 gi|256952154|gb|EEU68786.1| phage integrase [Enterococcus faecalis Merz96]
 gi|256955370|gb|EEU72002.1| phage integrase [Enterococcus faecalis HIP11704]
 gi|256998955|gb|EEU85475.1| phage integrase [Enterococcus faecalis CH188]
 gi|291079153|gb|EFE16517.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis R712]
 gi|291081767|gb|EFE18730.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis S613]
 gi|291592931|gb|EFF24521.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1636]
 gi|306507590|gb|EFM76720.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|306510576|gb|EFM79599.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0855]
 gi|310626838|gb|EFQ10121.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|310633458|gb|EFQ16741.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|311289702|gb|EFQ68258.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|315032050|gb|EFT43982.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0017]
 gi|315162894|gb|EFU06911.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0645]
 gi|315575946|gb|EFU88137.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309B]
 gi|315577866|gb|EFU90057.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0630]
 gi|315580736|gb|EFU92927.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309A]
          Length = 392

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 62/335 (18%), Positives = 128/335 (38%), Gaps = 59/335 (17%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q W +     R L++  + +Y+    Q  I   +   +K     +  LS  E++ F+   
Sbjct: 66  QKWFEYY---RSLNEQKVATYDKREEQVKILNRWIGGKK-----LSSLSSEELQKFLFIL 117

Query: 79  RTQK-------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP----- 126
           + +            SL+  +  +     Y KK+ +  E+ +  ++  K   SL      
Sbjct: 118 KEKGIDGVNVGYAKNSLQSLVQVLNMVFNYCKKKNLINENPMKFVKMPKYQLSLKDLKES 177

Query: 127 ------RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                 + L   +    ++  ++       + +   S + ++L+  G R+SEAL+L PQ+
Sbjct: 178 VNSLEDKFLTVDELRAFLNYGIV-------YEELPMSVLFHVLFYTGCRVSEALALQPQD 230

Query: 181 IMDDQSTL---------------RIQGKG--DKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
           I  +++ +               RI+        R VP+ P V + + E  D+       
Sbjct: 231 IDFERNEILFYKQTAVKGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRN 290

Query: 224 N----IQLPLF----RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
           +     +  LF     G RG P        ++++     G+      H  RH+ A+ L++
Sbjct: 291 SNFVVDETYLFVYLDPGKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMAS-LVA 349

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                  ++  LGH   +T++IY ++ S      +
Sbjct: 350 EYCSWDVLKDRLGHTDSTTSKIYRHLTSTEKLKPL 384


>gi|150019248|ref|YP_001311502.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149905713|gb|ABR36546.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 199

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 78/190 (41%), Gaps = 10/190 (5%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L +K+ L+L + +     +  K    R+ AI  L Y CGLR SE   L  +N   ++ 
Sbjct: 10  KYLTQKEVLSLFNAI----ENSGKLHSTRDLAIFRLAYRCGLRASEISMLKLENYNINKG 65

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            +  +  KG K   + L    +  + +Y               +F   + KP++      
Sbjct: 66  EIYCKRLKGSKNNTLRLDEKTKSVLDKYITENEITSESQT---IFTSQKNKPISRQTLDH 122

Query: 246 YIRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             +Q      +   +    HT++H+ A HL     D++ +Q  LGH  ++ T+IY    +
Sbjct: 123 LTKQYFSMASIQDKSKHHFHTIKHTTAVHLAECDMDIKELQWWLGHKSVTNTEIYFQFTT 182

Query: 304 KNGGDWMMEI 313
           K       ++
Sbjct: 183 KQQEKMYAKL 192


>gi|227461225|gb|ACP39553.1| putative integron integrase [uncultured microorganism]
          Length = 266

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 55/259 (21%), Positives = 94/259 (36%), Gaps = 51/259 (19%)

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +K+G     ++L  +    + ++         + N+    +S  LP  L   +  +++ 
Sbjct: 22  NRKVGRVPQNQALQALLFLYRQVQG---LDLPWLENVTRASRSRRLPVVLGRSEVRSILA 78

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            V          +      +L            AL L  ++++ ++STL I+        
Sbjct: 79  FVEGTPGLVAGLLYGGGLRLLE-----------ALRLRVKDVVFERSTLVIRDAKGGKDR 127

Query: 200 VPLLPSVRKAILEYYDLC---PFDLNLNIQLP-----------------------LFRGI 233
           V +LP      L  +       FDL      P                       +F   
Sbjct: 128 VTILPDAMAMPLRAHVARLHIWFDLERQRGAPGVSVPGALARKYRGVATQWGWQYIFPSR 187

Query: 234 RGKP-----------LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
                          L+    QR ++Q  R  G+    + HT RH FATHLL +G D+R+
Sbjct: 188 NLCRDPYSGQWIRHHLHEQTVQRAVKQAVRRAGIQQPASCHTFRHCFATHLLEDGYDIRT 247

Query: 283 IQSILGHFRLSTTQIYTNV 301
           +Q +LGH  + TT IYT+V
Sbjct: 248 VQELLGHSDVKTTMIYTHV 266


>gi|158339256|ref|YP_001520433.1| phage integrase [Acaryochloris marina MBIC11017]
 gi|158309497|gb|ABW31114.1| phage integrase, putative [Acaryochloris marina MBIC11017]
          Length = 298

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 54/288 (18%), Positives = 108/288 (37%), Gaps = 13/288 (4%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            L+  T +SYE      L     +        ++  L    +  +++      +   +  
Sbjct: 17  HLATSTARSYELTLMPLLKRYGSW--------SVELLDADILSEYLNSLTH--LSYTTHH 66

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R  + +K  L +  +++    + I  + +     +    L+  Q +  +    L T ++ 
Sbjct: 67  RHQATLKDLLNFAVRQRYIRSNPIAQLEHRSPDKAKGEHLS-DQPIRFLKPEQLTTLYQA 125

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
            + DAR  A++ LL+  G RISE L+L    +   Q   ++ GKG+K R      +   A
Sbjct: 126 IYNDARLYALVKLLHHSGARISEILALDLAEVDLGQRQFQVVGKGNKTRWCFYSENAAAA 185

Query: 210 ILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           +  Y     +  +  +         +   L+      +  Q  +          H LRH+
Sbjct: 186 LQTYIQHYRYTPSPALFTARKTPTSQVTRLSYRTAHHHWHQSIQGYPQIQGIRLHDLRHT 245

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           FAT  +   G L  +++++GH  + TT  Y  V S+         +  
Sbjct: 246 FATERVGLMG-LEELRALMGHQHIQTTLRYQTVTSEQAKGAAQRAFQH 292


>gi|153807337|ref|ZP_01960005.1| hypothetical protein BACCAC_01615 [Bacteroides caccae ATCC 43185]
 gi|149129699|gb|EDM20911.1| hypothetical protein BACCAC_01615 [Bacteroides caccae ATCC 43185]
          Length = 410

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 54/293 (18%), Positives = 109/293 (37%), Gaps = 31/293 (10%)

Query: 32  SKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K T Q Y    +    F+ + Y  E I ++ +      +   F+  R  ++    ++  
Sbjct: 129 AKGTFQRYITVCKHLHEFIPYTYKREDIPLKELNLTFINDFEYFL--RTEKRCRTNTVWG 186

Query: 91  SLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
            +  +K  +   +       +     + + +  +     L + +  TL+D  + +  HE 
Sbjct: 187 YMIVLKHIVAIARNDGRLPFNPFAGYINSPESVDR--GYLTKSEIQTLMDAPMKNAYHEL 244

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKGDKIRIVPLLPS 205
                    +       GL  S+  +LT  N       +   +  + K +    + LL  
Sbjct: 245 V------RDMFVFSVFTGLAYSDVKNLTTDNLQTFFDGNLWIITRRKKTNTESNIRLLDV 298

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHT 264
            RK I +Y               L R  +  P+ +     + ++++ R  G     + H 
Sbjct: 299 PRKIIEKYRG-------------LARDNKVFPMPSNTTCNKILKEIGRQCGFKTRLSTHV 345

Query: 265 LRHS-FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            RH+   T LLSNG  + ++  +LGH  + TTQIY  + S+     M  +  +
Sbjct: 346 ARHTNATTVLLSNGVPIETVSRLLGHTNIKTTQIYAKITSQKISQDMEALSHK 398


>gi|89147367|gb|ABD62544.1| integrase [uncultured bacterium]
          Length = 163

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/94 (37%), Positives = 52/94 (55%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A  E+     F  +     P     R   L+  V Q+ +++  R  G+  + + HT RH
Sbjct: 69  QAPKEWGWQYVFPASTRSIDPRSGKQRRHHLSDDVIQKAVKKAIRGAGILKNGSCHTFRH 128

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFATHLL NG D+R++Q +LGH  + TT IYT+V
Sbjct: 129 SFATHLLENGYDIRTVQELLGHKDVRTTMIYTHV 162


>gi|315149122|gb|EFT93138.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0012]
          Length = 309

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 85/213 (39%), Gaps = 21/213 (9%)

Query: 103 KKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
               + +++    +    +  +   S  + LN+ +   L+  + L       W       
Sbjct: 90  VDEGLISKNPTRKIVIKGKAPRPKKS--KFLNQFEVQALLKELELGEQLNWDW------- 140

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212
            + L+   GLR SEAL+LTP++    +  + I+   +         S       RK  ++
Sbjct: 141 FILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNSTGFFQSTKNESSKRKVQID 200

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +     F   +    P+        +        ++ L +   +P+  T H+LRH+ A+ 
Sbjct: 201 WQTAMQFSQLIRNMPPMEPIFVKGRVFNSTINSRLKVLCKRAQIPV-ITVHSLRHTHASL 259

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           LL  G  + S+ + LGH  ++TTQ  Y ++  +
Sbjct: 260 LLFAGVSIASVATRLGHSSMTTTQETYLHIIQE 292


>gi|296450534|ref|ZP_06892288.1| phage integrase family prophage LambdaCh01 [Clostridium difficile
           NAP08]
 gi|296879344|ref|ZP_06903339.1| phage integrase family prophage LambdaCh01 [Clostridium difficile
           NAP07]
 gi|296260609|gb|EFH07450.1| phage integrase family prophage LambdaCh01 [Clostridium difficile
           NAP08]
 gi|296429887|gb|EFH15739.1| phage integrase family prophage LambdaCh01 [Clostridium difficile
           NAP07]
          Length = 380

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 63/304 (20%), Positives = 121/304 (39%), Gaps = 37/304 (12%)

Query: 31  LSKL-TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            S+  +L +Y      ++     Y    I    I+ L    I+ +I K  + K+  +S+K
Sbjct: 85  YSENISLATY----NNYVSICKNYINPSIGKYKIQDLHPIHIQNYIDKL-SYKLNPQSIK 139

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             ++ +K  +K   + K+  E+ +  +   +         + +Q + L+D   L  + E 
Sbjct: 140 IHINILKLAIKRAYRLKLIKENVMDGIEAPRYKKFKNEIYDREQMIKLLD---LAKNTEM 196

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---------------KG 194
           +         + L  G GLRISE L LT  NI  +++T+ +                   
Sbjct: 197 ELP-------INLAIGLGLRISEVLGLTWDNIDFEENTITVNKITSRINGSVILKEPKTE 249

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNI----QLPLFRGIRGKPLNPGVFQRYIRQL 250
             IR +     +   + EY      +L  +        LF   + +P+   V  +  ++ 
Sbjct: 250 SSIRKISSPKELMSLLKEYKIKQNKNLLKSSIRNNNNLLFFNKKCEPIAEDVISKKFKRF 309

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDW 309
                LP     H LRHS  T L+++   ++ I   +GH  +STT  +Y++V  +   + 
Sbjct: 310 LEKNELP-HIRFHDLRHSHVTLLINSKVPIKVISERVGHSNISTTLSVYSHVLKEMDKEA 368

Query: 310 MMEI 313
             +I
Sbjct: 369 SDKI 372


>gi|150005005|ref|YP_001299749.1| putative transposase [Bacteroides vulgatus ATCC 8482]
 gi|294776367|ref|ZP_06741846.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|149933429|gb|ABR40127.1| putative transposase [Bacteroides vulgatus ATCC 8482]
 gi|294449783|gb|EFG18304.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 412

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 50/295 (16%), Positives = 106/295 (35%), Gaps = 34/295 (11%)

Query: 34  LTLQSYE------CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
            T+ +Y           +F+   + Y    I+I+ I  +  T+   ++  R T K G  +
Sbjct: 128 KTIATYRKYEVTRRHLAEFIQ--SKYNLSDISIKEITPMFITDFELYL--RTTCKCGYNT 183

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             + +   K  +   +   I       N + ++        L E +   ++   ++    
Sbjct: 184 TAKFMQFFKRIILIARNNGILIGDPFANYK-IRLEKVDRGYLTEDEIKIILKKKMVS--- 239

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKGDKIRIVPLL 203
             +    R+  I       GL   +  +L   N       +   +  + K +    VPLL
Sbjct: 240 -ERLEQVRDVFIFSCF--SGLAYVDVANLKEDNIRKSFDGNLWIITKRQKTNTDVNVPLL 296

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              +  + +Y            +  L  G     ++      Y++++    G+  + T H
Sbjct: 297 DIPKMILEKY------------KGKLPNGKVLPIISNQKLNAYLKEIADVCGIKKNLTFH 344

Query: 264 TLRHSF-ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
             RH+F  T  L+ G  + ++  +LGH  + TTQIY  + +    + M  +  + 
Sbjct: 345 LARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNNKISNDMQGLDKKF 399


>gi|332878411|ref|ZP_08446133.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332683631|gb|EGJ56506.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 443

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 53/295 (17%), Positives = 103/295 (34%), Gaps = 24/295 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKI 83
           L +    +  T   Y    R    FL       ++   ++QL  + I AF    RT ++ 
Sbjct: 125 LRVGVNRAVNTFYQYRNTCRILGAFLKEKYH--VSDMPVKQLDESFIEAFDMYMRTVRRF 182

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
             R++   ++ +KS +     R I   S        +K       L E +    +D    
Sbjct: 183 MPRTILGHINRLKSVMMLAVFRGIVPFSQFKGY-APQKPAFKQMYLTEDE----LDKFAN 237

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGDKIRIVPL 202
            T         R+  +       G+   +  SLT  N++  +  ++ I       R    
Sbjct: 238 TTYDTPNRNFTRD--MFLFSCWTGICYCDMRSLTAANLVKAEDGSMWIHT----ERQKTG 291

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            P   + +     +      ++    L        L      R+++++    G+    + 
Sbjct: 292 TPECVRLMEIPLSIIEKYKGMDGNGKLLP-----MLTKESMNRHLKKMSVMCGINRPISF 346

Query: 263 HTLRHSF-ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG---DWMMEI 313
           H  RH+F +   LS G  + ++  I+GH  ++TTQ Y  V         D + ++
Sbjct: 347 HQARHTFGSIICLSQGIPIETVSKIMGHRHITTTQRYAKVTQDKIDRDVDCLKDV 401


>gi|306845239|ref|ZP_07477815.1| Phage integrase [Brucella sp. BO1]
 gi|306274398|gb|EFM56205.1| Phage integrase [Brucella sp. BO1]
          Length = 308

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 104/276 (37%), Gaps = 31/276 (11%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97
           S++ + R FL  +    +E +            + + I   R +   + ++ R ++ +  
Sbjct: 57  SHKYNVRSFLGEI----DEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSK 112

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
            L+  K  K+    N+      K+     R L  ++   L   +                
Sbjct: 113 LLR--KAHKMGDIFNLPEFIRQKERVGRIRFLEHEEEKRLFAAIKSRCEDS--------Y 162

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            +   L   G R+ EA+ LT  +I + + T  +  K ++ R VPL    RKA        
Sbjct: 163 RLSVFLVDTGCRLGEAIGLTWNDIQEQRVTFWV-TKSNRSRTVPLTRRARKA-------- 213

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLS 275
               +  ++ P         LN   F++   + +  +GL        H LRH+ A+ L+ 
Sbjct: 214 SHIPHERLKGPF------SMLNQVRFRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVR 267

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            G D+R +Q  LGH  L  T  Y ++ + +    + 
Sbjct: 268 GGIDIRRVQMWLGHQTLQMTMRYAHLATHDLDSCVK 303


>gi|294852004|ref|ZP_06792677.1| tyrosine recombinase xerC [Brucella sp. NVSL 07-0026]
 gi|294820593|gb|EFG37592.1| tyrosine recombinase xerC [Brucella sp. NVSL 07-0026]
          Length = 308

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 104/276 (37%), Gaps = 31/276 (11%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97
           S++ + R FL  +    +E +            + + I   R +   + ++ R ++ +  
Sbjct: 57  SHKYNVRSFLDEI----DEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSK 112

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
            L+  K  K+    N+      K+     R L +++   L   +                
Sbjct: 113 LLR--KAHKMGDIFNLPEFIRQKERVGRIRFLEQEEKKRLFAAIKSRCEDS--------Y 162

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            +   L   G R+ EA+ LT  +I + + T  +  K ++ R VPL    RKA        
Sbjct: 163 RLSVFLVDTGCRLGEAIGLTWNDIQEQRVTFWV-TKSNRSRTVPLTRRARKA-------- 213

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLS 275
                  ++ P         LN   F++   + +  +GL        H LRH+ A+ L+ 
Sbjct: 214 SHIPRERLKGPF------SMLNQVRFRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVR 267

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            G D+R +Q  LGH  L  T  Y ++ + +    + 
Sbjct: 268 GGIDIRRVQMWLGHQTLQMTMRYAHLATHDLDSCVK 303


>gi|255975601|ref|ZP_05426187.1| phage integrase [Enterococcus faecalis T2]
 gi|307277808|ref|ZP_07558892.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|255968473|gb|EET99095.1| phage integrase [Enterococcus faecalis T2]
 gi|306505205|gb|EFM74391.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
          Length = 392

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 62/335 (18%), Positives = 128/335 (38%), Gaps = 59/335 (17%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q W +     R L++  + +Y+    Q  I   +   +K     +  LS  E++ F+   
Sbjct: 66  QKWFEYY---RSLNEQKVATYDKREEQVKILNRWIGGKK-----LSSLSSEELQKFLFIL 117

Query: 79  RTQK-------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP----- 126
           + +            SL+  +  +     Y KK+ +  E+ +  ++  K   SL      
Sbjct: 118 KEKGIDGVNVGYAKNSLQSLVQVLNMVFNYCKKKNLINENPMKFVKMPKYQLSLKDLKES 177

Query: 127 ------RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                 + L   +    ++  ++       + +   S + ++L+  G R+SEAL+L PQ+
Sbjct: 178 VNSLEDKFLTVDELRAFLNYGIV-------YEELPMSVLFHVLFYTGCRVSEALALQPQD 230

Query: 181 IMDDQSTL---------------RIQGKG--DKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
           I  +++ +               RI+        R VP+ P V + + E  D+       
Sbjct: 231 IDFERNEILFYKQTAVKGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRN 290

Query: 224 N----IQLPLF----RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
           +     +  LF     G RG P        ++++     G+      H  RH+ A+ L++
Sbjct: 291 SNFVVDETYLFVYLDPGKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMAS-LVA 349

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                  ++  LGH   +T++IY ++ S      +
Sbjct: 350 EYCSWDVLKDRLGHTDSTTSKIYRHLTSTEKLKPL 384


>gi|15609783|ref|NP_217162.1| integrase [Mycobacterium tuberculosis H37Rv]
 gi|15842187|ref|NP_337224.1| phage integrase family protein [Mycobacterium tuberculosis CDC1551]
 gi|148662487|ref|YP_001284010.1| phage integrase family protein [Mycobacterium tuberculosis H37Ra]
 gi|148823839|ref|YP_001288593.1| integrase [Mycobacterium tuberculosis F11]
 gi|167966927|ref|ZP_02549204.1| hypothetical integrase [Mycobacterium tuberculosis H37Ra]
 gi|215404613|ref|ZP_03416794.1| integrase [Mycobacterium tuberculosis 02_1987]
 gi|215412442|ref|ZP_03421188.1| integrase [Mycobacterium tuberculosis 94_M4241A]
 gi|215446906|ref|ZP_03433658.1| integrase [Mycobacterium tuberculosis T85]
 gi|253798270|ref|YP_003031271.1| integrase [Mycobacterium tuberculosis KZN 1435]
 gi|254365312|ref|ZP_04981357.1| hypothetical integrase [Mycobacterium tuberculosis str. Haarlem]
 gi|254551701|ref|ZP_05142148.1| integrase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|289553565|ref|ZP_06442775.1| integrase [Mycobacterium tuberculosis KZN 605]
 gi|289746449|ref|ZP_06505827.1| integrase [Mycobacterium tuberculosis 02_1987]
 gi|289758776|ref|ZP_06518154.1| phage integrase [Mycobacterium tuberculosis T85]
 gi|294994258|ref|ZP_06799949.1| integrase [Mycobacterium tuberculosis 210]
 gi|297635258|ref|ZP_06953038.1| integrase [Mycobacterium tuberculosis KZN 4207]
 gi|297732254|ref|ZP_06961372.1| integrase [Mycobacterium tuberculosis KZN R506]
 gi|298526121|ref|ZP_07013530.1| hypothetical integrase [Mycobacterium tuberculosis 94_M4241A]
 gi|306785454|ref|ZP_07423776.1| integrase [Mycobacterium tuberculosis SUMu003]
 gi|307085338|ref|ZP_07494451.1| integrase [Mycobacterium tuberculosis SUMu012]
 gi|313659587|ref|ZP_07816467.1| integrase [Mycobacterium tuberculosis KZN V2475]
 gi|1550687|emb|CAB02354.1| PROBABLE INTEGRASE [Mycobacterium tuberculosis H37Rv]
 gi|13882474|gb|AAK47038.1| phage integrase family protein [Mycobacterium tuberculosis CDC1551]
 gi|134150825|gb|EBA42870.1| hypothetical integrase [Mycobacterium tuberculosis str. Haarlem]
 gi|148506639|gb|ABQ74448.1| phage integrase family protein [Mycobacterium tuberculosis H37Ra]
 gi|148722366|gb|ABR06991.1| hypothetical integrase [Mycobacterium tuberculosis F11]
 gi|253319773|gb|ACT24376.1| integrase [Mycobacterium tuberculosis KZN 1435]
 gi|289438197|gb|EFD20690.1| integrase [Mycobacterium tuberculosis KZN 605]
 gi|289686977|gb|EFD54465.1| integrase [Mycobacterium tuberculosis 02_1987]
 gi|289714340|gb|EFD78352.1| phage integrase [Mycobacterium tuberculosis T85]
 gi|298495915|gb|EFI31209.1| hypothetical integrase [Mycobacterium tuberculosis 94_M4241A]
 gi|308329877|gb|EFP18728.1| integrase [Mycobacterium tuberculosis SUMu003]
 gi|308365129|gb|EFP53980.1| integrase [Mycobacterium tuberculosis SUMu012]
 gi|323718760|gb|EGB27919.1| integrase [Mycobacterium tuberculosis CDC1551A]
 gi|326904260|gb|EGE51193.1| integrase [Mycobacterium tuberculosis W-148]
 gi|328458042|gb|AEB03465.1| integrase [Mycobacterium tuberculosis KZN 4207]
          Length = 332

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 56/277 (20%), Positives = 99/277 (35%), Gaps = 45/277 (16%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQ---------------TIRQLSYTEIRAFISKRRTQK 82
           S+  D   +L+ L    +   TI+                   ++   +  ++ K+  Q 
Sbjct: 71  SWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLLDWLGKQ--QH 128

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +     K   S ++ F  +  +     +    ++  ++     PR           D   
Sbjct: 129 LSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRP-------AGDDVWQ 181

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
              +   + I+     ++ L    GLR +EA      + + D   L + GKG K RIVP+
Sbjct: 182 AALAKADRRIE----LMIRLAGEAGLRRAEAAQAHTGD-LMDGGLLLVHGKGGKRRIVPI 236

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
              +   I +                LF    G  L      + + +      LP   T 
Sbjct: 237 SDYLAALIRD-----------TPHGYLFPNGTGGHLTAEHVGKLVSRA-----LPGDATM 280

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           HTLRH +AT       +LR++Q +LGH  + TT+ YT
Sbjct: 281 HTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYT 317


>gi|227511532|ref|ZP_03941581.1| integrase [Lactobacillus buchneri ATCC 11577]
 gi|227085177|gb|EEI20489.1| integrase [Lactobacillus buchneri ATCC 11577]
          Length = 305

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 70/304 (23%), Positives = 130/304 (42%), Gaps = 33/304 (10%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +LL+  Q+W+ NL  +  + K+T + YE   RQ +          + +  + +L+Y ++ 
Sbjct: 6   KLLRYFQDWM-NLYKKDAVRKVTYRKYEMTYRQIVS-----LAPDLRMCELSRLTYQKLL 59

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN--MRNLKKSNSLPRALN 130
              ++   ++    ++      IKS L    +  I          ++  K      + LN
Sbjct: 60  NDYAETHERQ----TVMDFHRHIKSSLIDALEEGILERDPTRKAIIKGKKPGPHKTKFLN 115

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           + +   ++D++ L            +  IL L+   GLR SEAL++TP +    + TL I
Sbjct: 116 QHEVQLMLDSLSLDAGVN------WDYFIL-LITKTGLRFSEALAVTPNDFDFARQTLNI 168

Query: 191 QGKGDKI-RIVPLLP-----SVRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPG 241
               D   R     P     S+RK  L++  +  F      L+   P+F   +       
Sbjct: 169 NKTWDYKSRQAGFAPTKNLSSMRKIQLDWQTVIQFSQLTKELSEDKPIFVRSKVY---ND 225

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI-YTN 300
               Y+ +L +  G+P+  + H LRH+ A+ LL  G  + S+   LGH  ++TTQ  Y +
Sbjct: 226 TINHYLERLCKKSGIPI-ISVHGLRHTHASLLLYAGVSIASVARRLGHSNMNTTQQTYLH 284

Query: 301 VNSK 304
           +  +
Sbjct: 285 IIQE 288


>gi|217975610|ref|YP_002360280.1| integrase family protein [Shewanella baltica OS223]
 gi|217500805|gb|ACK48857.1| integrase family protein [Shewanella baltica OS223]
          Length = 451

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 107/275 (38%), Gaps = 21/275 (7%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           R  L  L            +  +++  ++A+  +    + G     R+L  ++S  K   
Sbjct: 117 RSVLPALNRRLLAHFGRYPLHMINHKMVQAWFDEISKTRKGAA--NRNLDTLQSVFKLAL 174

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           ++     +  + +R  K+   L R L+  +   L   +              +  IL LL
Sbjct: 175 RQGHCLTNPCIGIRQNKR-RVLNRFLSVAEMQRLSVALDECEKVGGSIAQCAD--ILRLL 231

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
              G R+SE   L  + +  ++  L +       +++ +  +    +  Y+     +L  
Sbjct: 232 LLTGCRLSEITFLKGEYVRGNE--LHLPDSKTGAKVLYIGQAAVDILSRYHCKANTELFP 289

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             Q            +  + Q    +LR+ +G+      H LRH+FA++ + +G  +  +
Sbjct: 290 MKQGA----------STSLVQSLWLRLRKQIGIE-DVRLHDLRHTFASYAVMDGCSIPMV 338

Query: 284 QSILGHFRLSTTQIYTNV---NSKNGGDWMMEIYD 315
            S+LGH +++ T  YT+V   + +   + +  ++ 
Sbjct: 339 ASLLGHKKVTMTLRYTHVGDDSVEQAAEIIGAVFK 373


>gi|111221204|ref|YP_711998.1| integrase [Frankia alni ACN14a]
 gi|111148736|emb|CAJ60412.1| Integrase [Frankia alni ACN14a]
          Length = 405

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 60/313 (19%), Positives = 104/313 (33%), Gaps = 50/313 (15%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL  L   RG    T + YE D R  ++ L       +    +  +S T++  ++   + 
Sbjct: 77  WLSGLSGVRG---RTAKDYERDLRNHVLPL-------LGGLELTAVSSTDVGQWVKGLQE 126

Query: 81  QKIGDRSLKRS---LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           + +  ++++     LS +       + + +   +     R  + S      L   +   L
Sbjct: 127 RGLAPKTIRNQHGLLSVLFQAAVDHEPQAMRPGNPCARTRLPEASGEEMHFLTPAELERL 186

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--------------- 182
           +             +      ++  L   GLR  EA  LT +N+                
Sbjct: 187 L-----------AALPPHYRPLVTTLALTGLRWGEATGLTARNVDLLGTPGTTAVRQSLQ 235

Query: 183 ---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
              D    L         R V L   +   ++  +     D        +F   RG  + 
Sbjct: 236 RQADGSLQLGPPKTRTSRRTVTLPAKLVDVLIPVWSGKEGDEM------VFTTQRGSLVR 289

Query: 240 PGVFQ-RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QI 297
              F  R  R      GL      H LRH+ A  L+S G  L SIQ  LGH  ++TT   
Sbjct: 290 HSHFYNRVWRPAVLRAGLVPGLRIHDLRHTHAAWLISAGRPLPSIQRRLGHRSITTTIDR 349

Query: 298 YTNVNSKNGGDWM 310
           Y ++  +     +
Sbjct: 350 YGHLLPEVDRGDL 362


>gi|94972396|ref|YP_595615.1| integrase [Lawsonia intracellularis PHE/MN1-00]
 gi|94731933|emb|CAJ53922.1| Integrase [Lawsonia intracellularis PHE/MN1-00]
          Length = 383

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/240 (21%), Positives = 95/240 (39%), Gaps = 21/240 (8%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +   S+K  L  +K  + +  +R +  +   L +   K  N     L++ Q   L+  + 
Sbjct: 155 LSPASIKHILVLLKRLINFGIQRNLCIKPQNLYIDMPKVDNQKTEILSKNQLKNLLLALD 214

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRI 199
                     +  + A + L    G+R S  L+L   +   + + + + G   K  K   
Sbjct: 215 AE-------PNQSDVAFIRLALVTGMRKSALLALKWSDCDFENNIITLSGNYAKKGKTDY 267

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +P+  S +  +L         +       +F    G        QR I++++    LP  
Sbjct: 268 IPMNNSAKSILL--------SIPKGNSDFIFATRNGTKRTT-YNQRLIKRIKEKAKLPKD 318

Query: 260 TTA-HTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
               H LRH+FA+ L S+G  DL +IQ +L H   + TQ Y ++++         I D+ 
Sbjct: 319 FRPLHGLRHNFASRLASSGKVDLYTIQRLLTHETPAMTQRYAHLHNDALKKAAAIIDDEF 378


>gi|307309696|ref|ZP_07589348.1| integrase family protein [Sinorhizobium meliloti BL225C]
 gi|306899908|gb|EFN30531.1| integrase family protein [Sinorhizobium meliloti BL225C]
          Length = 355

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 84/247 (34%), Gaps = 27/247 (10%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
               S   +   I   R +   + ++ R ++ +   L+   K            +  K  
Sbjct: 123 FSAFSQELLDGLIGALRKRGNSNATINRKMAALGKLLRKAYKMGDIHNLPEFKRQKEKAG 182

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
               R L   +   L   +   +             +   L   G R+ EA++L   +I 
Sbjct: 183 RL--RFLEADEEEVLFREIASRSELYLY--------LSIFLVDTGARLGEAIALKWNDIH 232

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           + ++T  +  K  + R VPL    + A+    D  P   +               ++   
Sbjct: 233 EGRATFWV-TKSGRSRTVPLTVRAKDALKRVADRSPGPFS--------------RIDQQK 277

Query: 243 FQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           ++      +   GL        H LRH+ A+ L+  G DLR +Q  LGH  L  T  Y +
Sbjct: 278 YRAVWNAAKVDAGLGNEDDLVPHILRHTCASRLVRGGIDLRRVQMWLGHQTLEMTMRYAH 337

Query: 301 VNSKNGG 307
           + S +  
Sbjct: 338 LASHDLD 344


>gi|89147448|gb|ABD62584.1| integrase [uncultured bacterium]
          Length = 163

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 3/110 (2%)

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G      +    P+  K++   +      L+ + +L +   +R   ++  V Q+ +++  
Sbjct: 56  GVWMPDAMGIKEPNAAKSLAWMWLFPSDRLSQDPKLGV---VRRHHMSENVVQKAVKKAV 112

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              G+    + HTLRHSFATHLL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 113 EQTGILKRISCHTLRHSFATHLLQRGQDIRTVQELLGHSDVSTTMIYTHV 162


>gi|284800918|ref|YP_003412783.1| integrase [Listeria monocytogenes 08-5578]
 gi|284056480|gb|ADB67421.1| integrase [Listeria monocytogenes 08-5578]
          Length = 383

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 117/295 (39%), Gaps = 33/295 (11%)

Query: 42  DTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY 101
           D    L F+     + I ++ + +  Y E+      +  ++    ++K+  + +++ +K 
Sbjct: 85  DINSTLNFVK-ANFDGIKLKNLTRKKYQEVLN----KYGEERATATVKKKHTYMRACIKD 139

Query: 102 LKKRKITTESNILNMRNL---KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
             +  +  +     +R +          + L EKQ + L  N++      T  ++  +  
Sbjct: 140 AVQEGVIYKDPTYRVRAIGNAPTQKESEKFLTEKQLIILTKNLM-----NTHKVEYTSRN 194

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI--------------RIVPLLP 204
           I++     G R SEAL LT   +  ++ ++ I    D                R + +  
Sbjct: 195 IIFFQIATGCRFSEALGLTWDCVDFEKKSVIINKTWDYKYTKFFSDTKNFSSKRSITIDE 254

Query: 205 SVRKAILE-YYDLCPFDLNLNIQLP---LFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLS 259
              + + E   +   F+L  NI+     +F       + +     + +++     G+  S
Sbjct: 255 KTIELLREIKLEQTKFELKKNIRNKHNLVFCSFDSFQVVSNNAVNKTLKKFCEKSGITPS 314

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
            T+H LRH+ A+ LL    +++ +   LGH  ++TT Q Y+++  +        +
Sbjct: 315 ITSHALRHTHASLLLFKNVNIKYLSKRLGHNSITTTLQTYSHIIDEMEQQESRHV 369


>gi|258653761|ref|YP_003202917.1| integrase domain-containing protein SAM domain-containing protein
           [Nakamurella multipartita DSM 44233]
 gi|258556986|gb|ACV79928.1| integrase domain protein SAM domain protein [Nakamurella
           multipartita DSM 44233]
          Length = 399

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 71/349 (20%), Positives = 124/349 (35%), Gaps = 77/349 (22%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-------- 81
           G S  T +SY  D  ++L FLA          + +Q    E+R ++   RT         
Sbjct: 53  GCSAATCRSYAHDILRWLRFLAAVG------VSWQQAGRVEVRDYVRWLRTAANPARDRR 106

Query: 82  -----------------------KIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMR 117
                                      R++  +LS +  F ++     +    S +   R
Sbjct: 107 TAAGGRPPAGTVNTATGKAYLAAGYAPRTINHALSVLSEFYRHAVDADLGPLRSPVPLRR 166

Query: 118 NL--------------------KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
           ++                    ++  + PRAL+E     L+  V     H+       + 
Sbjct: 167 SVTRFPGQSTARAAVGGPAYRQREPVAQPRALSEP----LLQRVFAALRHDR------DR 216

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR-IVPLLPSVRKAILEYYDL 216
           A++ +    G R SE LS+    I      + +  KG   R  +PL P     I  Y   
Sbjct: 217 ALIAVALSSGARASELLSMVRNGIDVGLGVVSVVPKGRPGRVWIPLAPEALVLIGRYLAA 276

Query: 217 CPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
            P  L      P++  IR    PL     ++ + ++ + LG   + T H  RH+FA  LL
Sbjct: 277 QPLGL---PDDPVWMTIRRPAHPLTYFAMRQVLERVNQELG--TNITWHDFRHTFAHRLL 331

Query: 275 SNGG-DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           ++    L  +Q+++ H  L+T   Y+          + E   +  P+ T
Sbjct: 332 ADDRLSLTDVQTLMRHRSLTTLTDYSAARLDELVTRLHEHLARPAPAPT 380


>gi|30908730|gb|AAP37597.1| IntI [uncultured bacterium]
          Length = 161

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/111 (33%), Positives = 55/111 (49%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +G GD      +     +A  E+     F  +     P    +R   +      R +++ 
Sbjct: 51  RGHGDVELPDAIARKYPRAPYEWGWKFVFPSHKLSVDPKTGAVRRHHVYENFVIRGVKEA 110

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            R  G+    + HTLRHSFATHLL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 111 ARAAGIAKHVSCHTLRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYTHV 161


>gi|255656037|ref|ZP_05401446.1| integrase [Clostridium difficile QCD-23m63]
          Length = 370

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 63/304 (20%), Positives = 121/304 (39%), Gaps = 37/304 (12%)

Query: 31  LSKL-TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            S+  +L +Y      ++     Y    I    I+ L    I+ +I K  + K+  +S+K
Sbjct: 75  YSENISLATY----NNYVSICKNYINPSIGKYKIQDLHPIHIQNYIDKL-SYKLNPQSIK 129

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             ++ +K  +K   + K+  E+ +  +   +         + +Q + L+D   L  + E 
Sbjct: 130 IHINILKLAIKRAYRLKLIKENVMDGIEAPRYKKFKNEIYDREQMIKLLD---LAKNTEM 186

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---------------KG 194
           +         + L  G GLRISE L LT  NI  +++T+ +                   
Sbjct: 187 ELP-------INLAIGLGLRISEVLGLTWDNIDFEENTITVNKITSRINGSVILKEPKTE 239

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNI----QLPLFRGIRGKPLNPGVFQRYIRQL 250
             IR +     +   + EY      +L  +        LF   + +P+   V  +  ++ 
Sbjct: 240 SSIRKISSPKELMSLLKEYKIKQNKNLLKSSIRNNNNLLFFNKKCEPIAEDVISKKFKRF 299

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDW 309
                LP     H LRHS  T L+++   ++ I   +GH  +STT  +Y++V  +   + 
Sbjct: 300 LEKNELP-HIRFHDLRHSHVTLLINSKVPIKVISERVGHSNISTTLSVYSHVLKEMDKEA 358

Query: 310 MMEI 313
             +I
Sbjct: 359 SDKI 362


>gi|14029258|gb|AAK52603.1|AF294653_1 INTI1 [Pseudomonas aeruginosa]
          Length = 182

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 86/201 (42%), Gaps = 28/201 (13%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLP 204
             T+ ++ GKG K R + L  
Sbjct: 162 HGTIIVREGKGSKDRALMLPE 182


>gi|256839225|ref|ZP_05544735.1| integrase [Parabacteroides sp. D13]
 gi|256740144|gb|EEU53468.1| integrase [Parabacteroides sp. D13]
          Length = 310

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/308 (16%), Positives = 109/308 (35%), Gaps = 40/308 (12%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +  ++L +  + ++  L  +   S    +SY+     FL F          +    ++  
Sbjct: 1   MKQYDLAEGMRMYIARLREQGRYSSA--KSYQDALNSFLRFCGQ------EVIPYTRIDR 52

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK------ITTESNILNMRNLKKS 122
             +  +    R ++    ++   +  I+       +           +   + +++ K+ 
Sbjct: 53  EMLLRYQDYLRDRECSWNTVSTYMRRIRRVYGLAMENGEAPFSRYLFKGIFMGVKS-KQK 111

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            +LP      ++L L    L+    +   +     A+  +   CG+   +   L   +I 
Sbjct: 112 KALP-----MESLRL----LMTAPLDDSGLRKTQRALCLMFLFCGMAFVDFAHLKKSDI- 161

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
                LR   +     ++  +  V K +L           L     LF  + G       
Sbjct: 162 -RNGVLRYNRQKTGTPMLVEIQPVAKELLAALMT----DTLRDSPYLFTFLSGTKTGEEA 216

Query: 243 FQRY----------IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           F+ Y          +++L    G+    T++++RHSFAT L   G  +  I  +LGH  +
Sbjct: 217 FREYTSALADFNSSLKELANACGVTEMVTSYSIRHSFATTLKEQGVPIEMISELLGHQSI 276

Query: 293 STTQIYTN 300
            TTQIY  
Sbjct: 277 KTTQIYLK 284


>gi|13358093|ref|NP_078367.1| integrase-recombinase protein [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|170762050|ref|YP_001752614.1| integrase-recombinase protein [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|171920189|ref|ZP_02931574.1| integrase-recombinase protein [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|186701629|ref|ZP_02971333.1| integrase-recombinase protein [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
 gi|11356975|pir||C82878 integrase-recombinase protein UU529 [imported] - Ureaplasma
           urealyticum
 gi|6899533|gb|AAF30942.1|AE002152_1 integrase-recombinase protein [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|168827627|gb|ACA32889.1| integrase-recombinase protein [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|171902566|gb|EDT48855.1| integrase-recombinase protein [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|186700862|gb|EDU19144.1| integrase-recombinase protein [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
          Length = 251

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 56/286 (19%), Positives = 115/286 (40%), Gaps = 50/286 (17%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + ++  L+  +G S  T+  Y+   +  +     Y +                    + +
Sbjct: 2   KKFINYLKNVKGYSDGTIAIYQKYVKVLIDNNLDYLK--------------------AIK 41

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           + +   + + +  LS  K++LK++  +        + +   KK   +   L     L ++
Sbjct: 42  KYEHNANVTKRVVLSAFKAYLKFINHKD------AILIVMPKKEIKVKEFLTWDNFLKII 95

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           +N+     ++  ++  +   IL +L+  G+R  E L L  ++I +++  L+I GKG K R
Sbjct: 96  NNI-----NQATFLGFQKYLILRILFETGIRSCELLKLEIKDIYENK--LKIHGKGKKER 148

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            V L   ++  I +Y          N                     Y +  R    +  
Sbjct: 149 FVYLSNDLQNNIKKYIGQIKTKYLFNFSYK---------------NLYQKVTRIKTNI-- 191

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             T H LR SFA H ++NG ++  +  ++GH  +++T +Y N  SK
Sbjct: 192 RLTPHILRRSFANHCINNGINIYDLSLVMGHNNINSTSLYLNKESK 237


>gi|253571563|ref|ZP_04848969.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251838771|gb|EES66856.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 412

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 50/295 (16%), Positives = 106/295 (35%), Gaps = 34/295 (11%)

Query: 34  LTLQSYE------CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
            T+ +Y           +F+   + Y    I+I+ I  +  T+   ++  R T K G  +
Sbjct: 128 KTIATYRKYEVTRRHLAEFIQ--SKYNLSDISIKEITPMFITDFELYL--RTTCKCGFNT 183

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             + +   K  +   +   I       N + ++        L E +   ++   ++    
Sbjct: 184 TAKFMQFFKRIILIARNNGILIGDPFANYK-IRLEKVDRGYLTEDEIKIILKKKMVS--- 239

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKGDKIRIVPLL 203
             +    R+  I       GL   +  +L   N       +   +  + K +    VPLL
Sbjct: 240 -ERLEQVRDVFIFSCF--SGLAYVDVANLKEDNIRKSFDGNLWIITKRQKTNIDVNVPLL 296

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              +  + +Y            +  L  G     ++      Y++++    G+  + T H
Sbjct: 297 DIPKMILEKY------------KGKLPNGKVLPIISNQKLNAYLKEIAEVCGIKKNLTFH 344

Query: 264 TLRHSF-ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
             RH+F  T  L+ G  + ++  +LGH  + TTQIY  + +    + M  +  + 
Sbjct: 345 LARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNNKISNDMQGLDKKF 399


>gi|332671639|ref|YP_004454647.1| integrase family protein [Cellulomonas fimi ATCC 484]
 gi|332340677|gb|AEE47260.1| integrase family protein [Cellulomonas fimi ATCC 484]
          Length = 380

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 99/282 (35%), Gaps = 32/282 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           L  Y   +I    I  +S  ++   +S    + +   + +R+LS ++    Y  + +  +
Sbjct: 89  LDKYVIPEIGAYPISGISAADVERVMSALTARGLATATRRRALSMMRLVFDYAIRDRRLS 148

Query: 110 ESNILNMRNLKKS-NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
            +    +   +      P  L  +Q   LV  V                 ++  L   G 
Sbjct: 149 VNVARMVALPRGGTKREPHWLRPEQLGRLVMAVPPLCQP-----------VVLFLGTTGC 197

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIR--------------IVPLLPSVRKAILEYY 214
           R SE  +L   +++     L ++      +                     V  A+ EY 
Sbjct: 198 RFSEMAALRVDDVVQTPHGLGVRVHRAATQSKRTSGAVFGPTKTHQTRTVPVPAALDEY- 256

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY--IRQLRRYLGLPLSTTAHTLRHSFATH 272
            +            LF    G       F+      +  R  G+   TT H LRH+ A+ 
Sbjct: 257 -VRTRVAFTAPGGYLFPSPSGGVWTNTNFRARSGWMEATRRAGVE-GTTIHDLRHTAASL 314

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
           L++ G D++++Q ILGH   + T  +Y ++ S+     M  +
Sbjct: 315 LIAAGADVKAVQVILGHSTATMTMDLYGHLFSEATWQAMERL 356


>gi|296169264|ref|ZP_06850912.1| prophage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295896069|gb|EFG75740.1| prophage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 363

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 97/283 (34%), Gaps = 36/283 (12%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           R +        E +     I ++ +  I+ +++      +G R+++ + S +K  L    
Sbjct: 82  RGYEDNWRLRIEPQFGSWPIARIDHESIQRWVNAMSASGLGPRTVRWTHSVLKMTLDRAV 141

Query: 104 KRK-ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
           +   +  ++     +      +    L   +  TL                     ++ L
Sbjct: 142 EEDQLLGKNPASRTKFPPMRQATHVYLTVGEVATLAQTCGAQGD------------VVLL 189

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI---------------RIVPLLPSVR 207
           L   GLR  E   L  +++      +R++    ++               R VP+   + 
Sbjct: 190 LAYTGLRFGELTGLNVEDVDLGARRIRVRRSMTQVGGKLVEGNPKSQAGRRSVPIPERLM 249

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-STTAHTLR 266
            A+    D  P         P     +G  L+   ++R +   +    +   +   H LR
Sbjct: 250 PALKARLDARPC------GAPAIASPKGSRLSLENWKRAVNWRKSVTEIGRDNLRVHDLR 303

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQI-YTNVNSKNGGD 308
           H++A+     G DLR +Q  +GH  ++ T   Y ++      D
Sbjct: 304 HTYASLSRRAGADLRLLQKAMGHASITVTAHTYADLFDDELDD 346


>gi|160890707|ref|ZP_02071710.1| hypothetical protein BACUNI_03152 [Bacteroides uniformis ATCC 8492]
 gi|237708220|ref|ZP_04538701.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|156859706|gb|EDO53137.1| hypothetical protein BACUNI_03152 [Bacteroides uniformis ATCC 8492]
 gi|229457773|gb|EEO63494.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 431

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 64/295 (21%), Positives = 112/295 (37%), Gaps = 29/295 (9%)

Query: 27  IERG-LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIG 84
           +E+G  +K T   Y      F  FL  + ++K T    ++L+   I  F    R  + + 
Sbjct: 126 VEKGQRAKSTYNKYLAVYNHFKTFL--WEKKKRTDMAYKELTKEIITDFDKYLRVEKGLS 183

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +L      + S      +R I          +L+   +    L E++  TL + V + 
Sbjct: 184 ANTLWIYTMPLLSLTDKAWRRGIVRTDPFGEY-SLEMQETDRGYLTEEELRTLANAVFV- 241

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ-----NIMDDQSTLRIQGKGDKIRI 199
                K   +    +       GL   +  +LT       +   ++  +  + K      
Sbjct: 242 -----KKQTSLVRDMFLFGCFTGLSYIDIKTLTHDKIQRMDFDGEEWIITRRTKTRVSSN 296

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPL+   ++ I  Y  L   DL       +F        +  V   +++Q+ +  G+   
Sbjct: 297 VPLMEIAKELIERYRGLAGGDL-------VFPMP-----SNSVCNTHLKQIAKACGIHKE 344

Query: 260 TTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              H  RH+FAT   L NGG + ++  ILGH  +STTQIY  V ++        I
Sbjct: 345 IGFHLSRHTFATTVYLCNGGTIEALSKILGHKHISTTQIYAEVTNRMVSSDFRAI 399


>gi|126699683|ref|YP_001088580.1| integrase [Clostridium difficile 630]
 gi|115251120|emb|CAJ68951.1| putative integrase [Clostridium difficile]
          Length = 370

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 62/304 (20%), Positives = 123/304 (40%), Gaps = 37/304 (12%)

Query: 31  LSKL-TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            S+  +L +Y      ++     Y    I    I+ L    I+ +I K  + K+  +S+K
Sbjct: 75  YSENISLATY----NNYVSICKNYINPSIGKYKIQDLHPVHIQNYIDKL-SYKLNPQSIK 129

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             ++ +K  +K   + K+  E+ + +++  +         + +Q + L+D   L  + E 
Sbjct: 130 IHINILKLAIKRAYRLKLIKENVMDSIKAPRYKKFKNEIYDREQMIKLLD---LAKNTEM 186

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---------------KG 194
           +         + L  G GLRISE L LT  NI  +++T+ +                   
Sbjct: 187 ELP-------INLAIGLGLRISEVLGLTWDNIDFEENTITVNKITSRINGSVILKEPKTE 239

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNI----QLPLFRGIRGKPLNPGVFQRYIRQL 250
             +R +     +   + EY      +L  +        LF   + +P+   V  +  ++ 
Sbjct: 240 SSVRKISSPKELMSLLKEYKIKQNKNLLKSSIRNNNNLLFFNKKCEPIAEDVMSKKFKRF 299

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDW 309
                LP     H LRHS  T L+++   ++ I   +GH  +STT  +Y++V  +   + 
Sbjct: 300 LEKNELP-HIRFHDLRHSHVTLLINSKVPIKVISERVGHSNISTTLSVYSHVLKEMDKEA 358

Query: 310 MMEI 313
             +I
Sbjct: 359 SDKI 362


>gi|99080617|ref|YP_612771.1| phage integrase [Ruegeria sp. TM1040]
 gi|99036897|gb|ABF63509.1| phage integrase [Ruegeria sp. TM1040]
          Length = 334

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 95/279 (34%), Gaps = 25/279 (8%)

Query: 37  QSYECDT-----RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           ++Y  D       + + +               Q++ +  R +++ R  +     ++   
Sbjct: 63  EAYRQDLGEKPTAKTMGYTGKAVLAHFGAYRPDQITTSLCRKYVTNRTAEGKSQGTIHTE 122

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L  ++S +++  K +I  ++   ++    K     R L +++   L+D            
Sbjct: 123 LGHLRSAMRFAVKERIIDKAP--SIERPAKPTPKERYLEKEEIAALIDA----------A 170

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
                +  ++LL+    RI   L LT   +   +  + ++    K R    +  +   I 
Sbjct: 171 SAPHIALAIHLLFATAGRIGAVLDLTWDRVDFQRGIINLRLDDSKTRKGRAIVPMNSGIR 230

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
                       +  +    G           ++      R   L    T HT+RHS A 
Sbjct: 231 AALQTAHDAALSDYVVEYAGGKVKN------IRKGFEAACRRAELD-GVTLHTIRHSSAV 283

Query: 272 HLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDW 309
            ++SNG  L  +   LGH  ++ T Q Y      +  D 
Sbjct: 284 AMVSNGVPLEKVAQYLGHSNVAITYQTYARFAPDHLQDA 322


>gi|218704195|ref|YP_002411714.1| Integrase from bacteriophage origin [Escherichia coli UMN026]
 gi|218431292|emb|CAR12170.1| Integrase from bacteriophage origin [Escherichia coli UMN026]
          Length = 351

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 87/236 (36%), Gaps = 32/236 (13%)

Query: 79  RTQKIGDRSLKRSLSG-IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  K+  +++    +  +  F +  +  + +  + + N+R  +   +    L  ++   L
Sbjct: 127 RVSKVSPKTMNLEHAYFLAMFNELKRIGEWSAPNPLENVRQYRTDETEMAFLTAEEIDRL 186

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +               +    ++ +    G R +EA +L    I   + T  I+ KG + 
Sbjct: 187 LLECKRSKV-------SYLELVVKICLATGARWNEAATLKSSQIAGGKVTF-IKTKGKRN 238

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL- 256
           R +PL   +   + E             +  LF                 R      G+ 
Sbjct: 239 RTIPLDDELLAELPE------------TKGALFPKPCY---------NAFRSALERAGIE 277

Query: 257 -PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            P     H LRH+FA+H + NGG++  +Q ILGH  ++ T  Y +    +  D + 
Sbjct: 278 LPAGQLTHVLRHTFASHFMMNGGNILVLQKILGHADITMTMRYAHFAPSHLEDAVR 333


>gi|126173817|ref|YP_001049966.1| phage integrase family protein [Shewanella baltica OS155]
 gi|125997022|gb|ABN61097.1| phage integrase family protein [Shewanella baltica OS155]
          Length = 451

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/275 (18%), Positives = 114/275 (41%), Gaps = 21/275 (7%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           R  L  L            +  +++  ++A+  +    + G     R+L  ++S  K   
Sbjct: 117 RSVLPALNRRLLAHFGRYPLHMINHKMVQAWFDEISKTRKGAA--NRNLDTLQSVFKLAL 174

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           ++     +  + +R  K+   L R L+  +   L  +V L    E     A+ + IL LL
Sbjct: 175 RQGHCLTNPCIGIRQNKR-RVLNRFLSVAEMQRL--SVALDECEEVGGSIAQCADILRLL 231

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
              G R+SE   L  + +  ++  L +       +++ +  +    +  Y+     +L  
Sbjct: 232 LLTGCRLSEITFLKGEYVRGNE--LHLPDSKTGAKVLYIGQAAVDILSRYHCKANTEL-- 287

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
               P+  G      +  + Q    +LR+ +G+      H LRH+FA++ + +G  +  +
Sbjct: 288 ---FPMKLGA-----STSLVQSLWLRLRKQIGIE-DVRLHDLRHTFASYAVMDGCSIPMV 338

Query: 284 QSILGHFRLSTTQIYTNV---NSKNGGDWMMEIYD 315
            S+LGH +++ T  YT+V   + +   + +  ++ 
Sbjct: 339 ASLLGHKKVTMTLRYTHVGDDSVEQAAEVIGAVFK 373


>gi|188526761|gb|ACD62262.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 50/94 (53%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 65  RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPVTPHTLRH 124

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 125 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|138895610|ref|YP_001126063.1| putative integrase/recombinase [Geobacillus thermodenitrificans
           NG80-2]
 gi|196249622|ref|ZP_03148319.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|134267123|gb|ABO67318.1| Putative integrase/recombinase [Geobacillus thermodenitrificans
           NG80-2]
 gi|196210916|gb|EDY05678.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 197

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 68/171 (39%), Gaps = 8/171 (4%)

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
           + +    R+ AI+YL    GLR+ E  +L   +I  +   LRI GKG K+R VP+   + 
Sbjct: 27  DPEEKYRRDRAIVYLFVYAGLRVEELSNLKLTDIDLEMRRLRIVGKGMKVRTVPISNILL 86

Query: 208 KAILEYYDLCPFDLNLNIQL----PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
             + ++             +     +F   R    +    QR +             T H
Sbjct: 87  AELQDWLAFRAEMAKKKPHVEASPYVFYSQRSPKFSVRGIQRMVESY---SPPGKKLTPH 143

Query: 264 TLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             RH+F   +L     D+  ++ + GH  ++TT  Y   +  +  D +  +
Sbjct: 144 MFRHTFCKWMLKATNNDIEKVRRLAGHSHIATTSRYVKDSYSDLADAVEAL 194


>gi|323190945|gb|EFZ76212.1| integrase [Escherichia coli RN587/1]
          Length = 346

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 87/236 (36%), Gaps = 32/236 (13%)

Query: 79  RTQKIGDRSLKRSLSG-IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  K+  +++    +  +  F +  +  + +  + + N+R  +   +    L  ++   L
Sbjct: 127 RVSKVSPKTMNLEHAYFLAMFNELKRIGEWSAPNPLENVRQYRTDETEMAFLTTEEIDRL 186

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +           +        ++ +    G R +EA +L    I   + T  ++ KG + 
Sbjct: 187 LLECKRSKVKYLE-------LVVKICLATGARWNEAATLKSSQIAGGKVTF-VKTKGKRN 238

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL- 256
           R +PL   +   + E             +  LF                 R      G+ 
Sbjct: 239 RTIPLDDELLSELPE------------TKGALFPKPCY---------NAFRSALERAGIE 277

Query: 257 -PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            P     H LRH+FA+H + NGG++  +Q ILGH  ++ T  Y +    +  D + 
Sbjct: 278 LPSGQLTHVLRHTFASHFMMNGGNILVLQKILGHADITMTMRYAHFAPSHLEDAVR 333


>gi|323485586|ref|ZP_08090930.1| site-specific recombinase XerD [Clostridium symbiosum WAL-14163]
 gi|323401104|gb|EGA93458.1| site-specific recombinase XerD [Clostridium symbiosum WAL-14163]
          Length = 306

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/317 (16%), Positives = 109/317 (34%), Gaps = 43/317 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   LE + G S  TL SY C    F+                 +L+   ++ +   
Sbjct: 9   VEQFKIYLEKQ-GRSAKTLTSYACSVSMFISLCG-------------ELTVENLKRYREY 54

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES---NILNMRNLKKSNSL-PRALNEKQ 133
              +     ++   + G+  +L YL++      S         + ++   L P  +    
Sbjct: 55  LL-KNYQLNTVNTRIYGMNRYLDYLQESGRLPASLTLPSGGSPDWQEPIHLNPVKITRDG 113

Query: 134 ALTLVDNVLLHTSHETKWIDARNS----------------AILYLLYGCGLRISEALSLT 177
              +        S+    I  R+                  ++  L   G R+SE L + 
Sbjct: 114 VYRMQPVKEQKKSYLDTVISQRDYERMKRRLKQDGNMYWYFVIRFLGATGARVSELLQIK 173

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
            +++      L +  KG KIR +    S+    + ++              +F    G  
Sbjct: 174 IEDLRL--GYLDLYTKGGKIRRLYFPRSLCAEAIPWFMER-----GTRSGFIFLNQHGNL 226

Query: 238 LNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           ++    +  ++   +   + P +   H+ RH FA + L    D+  +  ++GH  + TT+
Sbjct: 227 ISSRGIELRLKHFAKLYKINPKTVYPHSFRHRFAKNFLKRFNDISLLADLMGHDSIETTR 286

Query: 297 IYTNVNSKNGGDWMMEI 313
           IY   +S+     +  I
Sbjct: 287 IYLTRSSQEQKALLDRI 303


>gi|315641378|ref|ZP_07896453.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952]
 gi|315482871|gb|EFU73392.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952]
          Length = 316

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 55/283 (19%), Positives = 103/283 (36%), Gaps = 34/283 (12%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           TL  Y+   +        +  E +    ++ L     ++ +++         +L      
Sbjct: 39  TLAKYKMSLK--------WVRELVPDLFLQDLDRKSYQSLLNQYAMTHEKQTTLDFHHQ- 89

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPR---ALNEKQALTLVDNVLLHTSHETKW 151
           +K  L+     +I        +  +K     P+    LN+     L+D++ L       W
Sbjct: 90  LKGALRDALDERIIISDPTRKVV-IKGKTPRPKKDKYLNQFDLQKLLDSLELTEQVSFDW 148

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA-- 209
                  ++ L+   GLR SEAL+LTP++      T+ +    +           + A  
Sbjct: 149 -------LILLIAKTGLRFSEALALTPEDFNFFNQTISVTKTWNYKTNEGGFMGTKNASS 201

Query: 210 -------ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
                              +L    P+F   R            +R+  +  G+P+  T 
Sbjct: 202 KRHVSIDWKTGMQFAQLIKDLPDNEPIFVKERVF---NSTVNNLLRRCCKKTGIPI-ITV 257

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
           H LRH+ A+ LL  G  + S+   LGH  ++TT QIY ++  +
Sbjct: 258 HGLRHTHASLLLFAGVSIASVARRLGHANMTTTQQIYLHIIQE 300


>gi|312902063|ref|ZP_07761324.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0470]
 gi|311290845|gb|EFQ69401.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0470]
          Length = 309

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 85/213 (39%), Gaps = 21/213 (9%)

Query: 103 KKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
               + +++    +    +  +   S  + LN+ +   L+  + L       W       
Sbjct: 90  VDEGLISKNPTRKIVIKGKTPRPKKS--KFLNQFEVQALLKELELGEQLNWDW------- 140

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212
            + L+   GLR SEAL+LTP++    +  + I+   +         S       RK  ++
Sbjct: 141 FILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGFFQSTKNESSKRKVQID 200

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +     F   +    P+        +        ++ L R   +P+  T H+LRH+ A+ 
Sbjct: 201 WQTAMQFSQLIRNMPPMEPIFVKGRVFNSTINSRLKVLCRRAQIPV-ITVHSLRHTHASL 259

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           LL  G  + S+ + LGH  ++TTQ  Y ++  +
Sbjct: 260 LLFAGVSIASVATRLGHSSMTTTQETYLHIIQE 292


>gi|228926958|ref|ZP_04090024.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228832693|gb|EEM78264.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
          Length = 319

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 65/312 (20%), Positives = 120/312 (38%), Gaps = 22/312 (7%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           VS E     +++L   + + G +  TLQ Y  D R  L  +  + E K     + +L+  
Sbjct: 14  VSQENKNLVKDFLIEKKAQ-GKAASTLQQYHWDLRIILFLIHEHFENK----NLIELTRK 68

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRN-LKKSNSLP 126
           +IR      +  K+ +  +   +S ++S L++           +    +R   K      
Sbjct: 69  DIRNLSIIFQEMKMSNARVNGLMSALRSALEFCADDDDYEYEFNVGSRVRGLPKSPIREI 128

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             + E Q   L+D +L              +  L L Y    R +E   +  + + +   
Sbjct: 129 TFITEYQINWLIDELLEQEK-------YMLATYLSLSYYSAARKNEVYQVQKEGLTEQYY 181

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           T  ++GK  K   +   P V+K I  Y +    D   ++ + +++    K LN  VF  +
Sbjct: 182 TNVVRGKRGKKFRLYYNPRVQKCIRLYINQRGKDAIPDLFVRVYKNGERKTLNKSVFNYW 241

Query: 247 IRQLRRYL----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +   + L    G       H  RHS   +L   G  L  ++S+  H  +STT+ Y    
Sbjct: 242 CKIFSKMLNEKEGKDFKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTESYLK-- 299

Query: 303 SKNGGDWMMEIY 314
                + + EI+
Sbjct: 300 -DRSEEDIAEIF 310


>gi|210610569|ref|ZP_03288495.1| hypothetical protein CLONEX_00685 [Clostridium nexile DSM 1787]
 gi|210152428|gb|EEA83434.1| hypothetical protein CLONEX_00685 [Clostridium nexile DSM 1787]
          Length = 411

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 55/345 (15%), Positives = 113/345 (32%), Gaps = 64/345 (18%)

Query: 20  NWL--QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           N+L  + +  +  L   T  +Y      F+        +    + +R + Y+++  F + 
Sbjct: 73  NFLFDRYISTKTELRSTTYSNYLYTWNHFIR-------DTFGKKKVRDVKYSDVLFFYTD 125

Query: 78  R-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM--RNLKK---SNSLPRALNE 131
               Q +   +L+   + ++   +   +  I  ++ +        K+   +    RAL  
Sbjct: 126 LINNQGLQINTLETINTVLRPTFQLAVRDDIIRKNPVDGAYCEVKKRNGGARKTRRALTV 185

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            Q    ++ V  +                  L G G RI EA+ +   +I  +   + I 
Sbjct: 186 DQQRKFMEYVAKN------PFFYHWYPFFVFLLGTGCRIGEAIGIRWDDIDLENRIIDIN 239

Query: 192 G----------------------KGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLN 224
                                       R +P++  V   + E Y+         +    
Sbjct: 240 HSLTYYQRADDSYKCEFRVSLPKTEAGNRRIPMMQQVYDVLQEEYERQKQEGFCVENVDG 299

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST---------------TAHTLRHSF 269
           +   +F    G P NP    R I+++                         + H  RH+F
Sbjct: 300 MTNFVFTNRFGMPHNPAAVNRAIKRIVDTHNSEEEVAAKKEKREPVMIPRFSCHIFRHTF 359

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
           A+    N  +++ IQ ++GH  +STT  IY   N       + ++
Sbjct: 360 ASRFCENETNIKVIQEVMGHADVSTTMNIYAEANPDVTKSVIEKL 404


>gi|189440818|ref|YP_001955899.1| Integrase [Bifidobacterium longum DJO10A]
 gi|189429253|gb|ACD99401.1| Integrase [Bifidobacterium longum DJO10A]
          Length = 312

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 86/226 (38%), Gaps = 22/226 (9%)

Query: 103 KKRKITTESNILN--MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
               +          ++  +      + LN+ +   ++ ++ L       W       ++
Sbjct: 91  VDEGLIQRDPTRKAIIKGKQPRQKKTKYLNQFELHAVLADLKLDPIPNWDW-------LI 143

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY-- 213
            L+   GLR SEAL LTP +      TL +    +       +P     SVRK  L++  
Sbjct: 144 LLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWNYKNGGGFVPTKNASSVRKVQLDWQL 203

Query: 214 -YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
              L     NL    P+F   +            + +  +  G+P+  + H LRH+ A+ 
Sbjct: 204 IMQLSVLLKNLPDDKPIFVNGKVYNSTANGI---LARHCKQAGVPV-ISIHGLRHTHASL 259

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQT 317
           LL  G  + S+   LGH  ++TTQ  Y +V  +     +  + D  
Sbjct: 260 LLFAGVSIASVSKRLGHASMNTTQETYLHVIRELENKDVDIVMDNA 305


>gi|187924023|ref|YP_001895665.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187715217|gb|ACD16441.1| integrase family protein [Burkholderia phytofirmans PsJN]
          Length = 422

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 66/341 (19%), Positives = 121/341 (35%), Gaps = 63/341 (18%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + WL N    +     T ++Y  +  + L++      + ++  ++        + F
Sbjct: 64  LDAVRAWLSNYADTKT----TFENYRKEAERLLLWAVVQLGKPLS--SLTHEDLLLFKGF 117

Query: 75  ISK----------------RRTQK-------IGDRSLKRSLSGIKSFLKYLKKRKITTES 111
           +                  R  ++       +   S +++L  + +   +L        +
Sbjct: 118 LVDPQPAARWVSSTGGKFPRGDERWRPFNGPLSPASQRQALIILNAMFTWLVNAGYLRGN 177

Query: 112 NILNMR--NLKKSNSLPRALNE---KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
            +  +R    + +  + R L+     +    V+  L   S E +   AR+  +  L Y  
Sbjct: 178 PMALLRQRAKRSAPRVTRYLSTSLWDEVKVFVEQ-LPRESAEERAYYARSRWLTTLFYLQ 236

Query: 167 GLRISEALSLTPQNIMD-------DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           G+RISE       +          DQ  L   GKG+K RIVP  P + + +  Y      
Sbjct: 237 GMRISEVAGGKMGDFSRRLGADGKDQWWLETLGKGNKERIVPASPELIQEMRLYRIENGL 296

Query: 220 DL--NLNIQLPL---FRGIRGKPLNPGVFQRYIRQL---------------RRYLGLPLS 259
                 + + PL   FRG     L+       I+ +                        
Sbjct: 297 APLPTRSEETPLVIPFRGRNRC-LSRSAIHDAIKSIFGNAASWLRSKGAEFSDRADELER 355

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            +AH LRH+  +H    G DLR+I+  LGH  L+TT +Y +
Sbjct: 356 ASAHWLRHTAGSHQADGGVDLRTIRDNLGHVSLNTTSLYLH 396


>gi|307546670|ref|YP_003899149.1| type 1 fimbriae regulatory protein FimB [Halomonas elongata DSM
           2581]
 gi|307218694|emb|CBV43964.1| K07357 type 1 fimbriae regulatory protein FimB [Halomonas elongata
           DSM 2581]
          Length = 208

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 12/177 (6%)

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L   +   L+   + H  H  +     ++ ++ L +  GLR+SE ++L    I      L
Sbjct: 36  LTRDEVHRLIRGAMHHQRHGRR-----DALMIRLAFEHGLRVSELVALRWSAIDLVTHEL 90

Query: 189 RIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           R+   KG      PL  S  +A+  Y        +      +F   RG P++   F+R +
Sbjct: 91  RVNRIKGSLDGTHPLQGSTVRALKRYQRQ-----DGRSSGLVFVNERGTPVSVDGFRRMM 145

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            +L   + L +    H LRH+   HL+++G DLR +Q  LGH  +  T  YT +  +
Sbjct: 146 HRLSEQV-LGVKWHPHALRHACGVHLINSGVDLRIVQQYLGHANIQNTVAYTALTGR 201


>gi|293433077|ref|ZP_06661505.1| integrase bacteriophage origin [Escherichia coli B088]
 gi|291323896|gb|EFE63318.1| integrase bacteriophage origin [Escherichia coli B088]
          Length = 346

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 87/236 (36%), Gaps = 32/236 (13%)

Query: 79  RTQKIGDRSLKRSLSG-IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  K+  +++    +  +  F +  +  + +  + + N+R  +   +    L  ++   L
Sbjct: 127 RVSKVSPKTMNLEHAYFLAMFNELKRIGEWSAPNPLENVRQYRTDETEMAFLTTEEIDRL 186

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +           +        ++ +    G R +EA +L    I   + T  ++ KG + 
Sbjct: 187 LLECKRSKVKYLE-------LVVKICLATGARWNEAATLKSSQITGGKVTF-VKTKGKRN 238

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL- 256
           R +PL   +   + E             +  LF                 R      G+ 
Sbjct: 239 RTIPLDDELLSELPE------------TKGALFPKPCY---------NAFRSALERAGIE 277

Query: 257 -PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            P     H LRH+FA+H + NGG++  +Q ILGH  ++ T  Y +    +  D + 
Sbjct: 278 LPSGQLTHVLRHTFASHFMMNGGNILVLQKILGHADITMTMRYAHFAPSHLEDAVR 333


>gi|78358438|ref|YP_389887.1| phage integrase family site specific recombinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78220843|gb|ABB40192.1| site-specific recombinase, phage integrase family [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 407

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 97/246 (39%), Gaps = 17/246 (6%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES-NILNMRNLK 120
            +   +  ++     +         ++K +L+         +   I   +     ++   
Sbjct: 165 PLATTTTKDLEEVKRRMMKAGRAPATIKYALALFSQMWTLAQNYGIADGTCPAKRLKLPA 224

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           + N   R L   +  TL+      ++   K     + A+L L   CGLR  E  +L  ++
Sbjct: 225 RDNKRQRYLKPAEIDTLL------SALRDKSQKTHDIALLSL--ECGLRFGEIANLRWED 276

Query: 181 IMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           +  +   L I+  K  + R   +  ++R  +L    L   D   ++  P + G     ++
Sbjct: 277 VDLEHERLFIRDPKSRRNRFTYINQTIRSMLL----LNRPDRAGDLIFPDYEGKPMARVS 332

Query: 240 PGVFQRYIRQL--RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
              F R   +L              HTLRH+FA+ L++NG  L +++ +LGH  L+ T+ 
Sbjct: 333 -KTFGRVADELFNSDVTDTRNRVCFHTLRHTFASRLVANGTPLYNVKELLGHSSLAMTER 391

Query: 298 YTNVNS 303
           Y ++  
Sbjct: 392 YAHLAP 397


>gi|319936510|ref|ZP_08010925.1| integrase [Coprobacillus sp. 29_1]
 gi|319808402|gb|EFW04957.1| integrase [Coprobacillus sp. 29_1]
          Length = 391

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/300 (17%), Positives = 103/300 (34%), Gaps = 38/300 (12%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           +Q    +    E+K+  ++I  +  ++ + +  + + +     ++      +K+      
Sbjct: 98  KQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMKDKGFSYNTINNHKRSLKASFYIAI 157

Query: 104 KRKITTESNI--LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
           +     ++         ++       AL E+Q   L+  +      +T  +  ++   + 
Sbjct: 158 QDDCVRKNPFDFKLSEVIENDTKEKVALTEEQEQALLSFI------KTDNVYHKHYDDVL 211

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPS 205
           +L   GLRISE   LT  +I      + I                      IR VPL   
Sbjct: 212 ILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGYYIETPKTKSGIRQVPLSRE 271

Query: 206 VRKAILEYYDLCPFDLNL---NIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYL 254
             +         P             LF   +GKP        L   + ++Y +  +   
Sbjct: 272 TIQTFQRVMKKRPKAEPFVIDGRGNFLFVNHKGKPKVAIDYNMLVVRMVKKYNKYHKD-- 329

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
                 T HTLRH+F T L S   + + +Q I+GH  +S T   Y + +       +  +
Sbjct: 330 NPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQRL 389


>gi|317473155|ref|ZP_07932453.1| phage integrase [Anaerostipes sp. 3_2_56FAA]
 gi|316899379|gb|EFV21395.1| phage integrase [Anaerostipes sp. 3_2_56FAA]
          Length = 297

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 50/309 (16%), Positives = 104/309 (33%), Gaps = 41/309 (13%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L  LEI    ++ T  SY  + R        +  E    ++I ++   +I+ ++    ++
Sbjct: 14  LHELEI----AESTAYSYSKNLR--------FINEYFHGKSIYEIDKNDIQDYVKFLYSK 61

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVD 139
                ++      I     Y    +I  +  +    +   K         +E +   ++ 
Sbjct: 62  GCKTDTITNYFKLINMTFNYAVDYEILPKGANPCYKIVIPKTEKQEINPFSETEMEKILK 121

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
              L              A  ++ Y  G+R  E  +L  ++I  +   +++Q      + 
Sbjct: 122 VKCL----------PWLYAGEFIAYRTGMRKGEIYALRKKDIDFNGGFIKVQKTQSLTKN 171

Query: 200 VPL-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
             +                  IL   +      N +  + LF       + P        
Sbjct: 172 AKVILKEPKSKSSRRRIACDKIL--MNFLWNLSNRSESVFLFPNNDTFFV-PWNISSAFT 228

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGG 307
            +     +P   T H LRH+ AT LLS+    + +Q  LGH  + TT   Y+++      
Sbjct: 229 DVCEMAKVPRR-TFHELRHTHATVLLSHNVHPKVVQERLGHASIQTTLNTYSHLIPDMQH 287

Query: 308 DWMMEIYDQ 316
             +  ++D+
Sbjct: 288 TAV-NVFDK 295


>gi|331091157|ref|ZP_08339999.1| hypothetical protein HMPREF9477_00642 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405379|gb|EGG84915.1| hypothetical protein HMPREF9477_00642 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 420

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 114/322 (35%), Gaps = 42/322 (13%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ- 81
           + L  + G+   T  +Y                       I ++  ++ + F+ K + + 
Sbjct: 88  RYLATKTGVKYNTQMNYN-------FVKNILKAHPFGDTKISRVKTSDAKLFLIKLQQED 140

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLKKSNSLPR-ALNEKQALTLVD 139
             G  S+K     ++   +      +  ++     +  +  ++S+ R A+ ++Q    + 
Sbjct: 141 GRGYSSVKTIRGVLRPAFQMAVDDGVLNKNPFGFQLAGVVVNDSVTREAITKEQMNKFLK 200

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------- 191
            V          +  +   ++Y+L+  G+RISE   LT  +I  + + + I         
Sbjct: 201 FV------HDDNVYCKYYEVIYILFHTGMRISEFCGLTISDIDLENNIVNIDHQLQRTSD 254

Query: 192 ------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
                       G         +    R  + +        +       LF    G P  
Sbjct: 255 MKYILDTTKTDAGTRKLPITQDVADCFRSILEDRKKPRYEKMIKGHTGFLFLDKNGNPEV 314

Query: 240 PGVFQRYIRQLRRYLG-----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              +Q  +  + +           + T H  RH++ +++  +G + +++Q ++GH  +S 
Sbjct: 315 AMHWQHRLNHMVKRYNDIYRVQMPNITPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISV 374

Query: 295 TQ-IYTNVNSKNGGDWMMEIYD 315
           T   YT+   ++  D + ++ D
Sbjct: 375 TMNTYTHWGLEDAADELKKMED 396


>gi|170755021|ref|YP_001781468.1| site-specific recombinase [Clostridium botulinum B1 str. Okra]
 gi|169120233|gb|ACA44069.1| site-specific recombinase [Clostridium botulinum B1 str. Okra]
          Length = 376

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/350 (14%), Positives = 118/350 (33%), Gaps = 79/350 (22%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR---------- 79
             ++ TL+ Y    + +  +L             + ++  ++  F++  +          
Sbjct: 39  NYARNTLRMYCQHLKLYFEYLQQRE------LDFQDITIDDLALFVNWLQNPYESLKVIP 92

Query: 80  ----TQKIGDRSLKRSLSGIKSFLKYLKKRKITTES------------------------ 111
                     R++   ++ + +F  Y+ + +  + +                        
Sbjct: 93  GTHIESARSPRTINIIVNTVLTFYDYILRHEKYSNNISDRLKRFVSIPSRNFKGFLYGIA 152

Query: 112 -----NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
                   N+  LK   S P+ LN+++   LV              + R+  +L LLY  
Sbjct: 153 YEHKKVASNILKLKVHKSKPKTLNKEEIEMLVRAC----------NNLRDKFLLSLLYET 202

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKI-----------RIVPLLPSVRKAILEYYD 215
           G+RI EALSL  ++       + ++ +G              R + +  ++    +EY  
Sbjct: 203 GMRIGEALSLWIEDFDISDMIIDLKDRGQLENNAEIKTVSSPRRIDISQNLADMFMEYIA 262

Query: 216 LCPFDLNLNIQLPLFRG--IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
               +      + +      + K +         R L++   +    T H  RHS  T L
Sbjct: 263 KYHTEEVETNHIFIKISGDNKYKAMTYIDVDNLFRTLKKKTKI--YVTPHMFRHSSLTVL 320

Query: 274 LSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQTHPSIT 322
              G     ++   GH  + TT   Y + + +     + + +++T P++ 
Sbjct: 321 RMAGWQPELLRIRAGHKNIYTTMNTYIHPSDEE----IAKEFEKTRPNLD 366


>gi|317486732|ref|ZP_07945549.1| phage integrase [Bilophila wadsworthia 3_1_6]
 gi|316922115|gb|EFV43384.1| phage integrase [Bilophila wadsworthia 3_1_6]
          Length = 363

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 90/266 (33%), Gaps = 17/266 (6%)

Query: 49  FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLK-YLKKRKI 107
           +L  +         + ++    I       + + +  ++ K  +  ++   +        
Sbjct: 104 YLEHHIIPIFGDARMDKIRPMHIEELKKAIQNKGLSPQTEKHVIGFVRQVYRKAKLWGVY 163

Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
                   ++     ++  R L EK+A  L+D +   +          + A + L    G
Sbjct: 164 VGSIPTEGVQLPAVDSARLRFLTEKEARILLDELKKRSPQ------WHDIAYVSL--YTG 215

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           +R+ E LSL   ++      + +       R   +   V++  L          +    +
Sbjct: 216 MRLREVLSLKVGHVNIAARIINVMDAKAGTRAAYMNEEVQRIFLR----RCDGKDTEGFV 271

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL---STTAHTLRHSFATHLLSNGGDLRSIQ 284
              +G          F+R    L    G+         HTLRH+F + L   G  L +I 
Sbjct: 272 FEQKGGGHIRYISSAFKRTADMLFNE-GITDARYKVVFHTLRHTFGSWLAQKGVPLYTIA 330

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWM 310
            ++GH  L  T+ Y+ ++     D +
Sbjct: 331 ELMGHSTLEMTKRYSKLSPDTKRDAL 356


>gi|238760428|ref|ZP_04621566.1| Int [Yersinia aldovae ATCC 35236]
 gi|238701323|gb|EEP93902.1| Int [Yersinia aldovae ATCC 35236]
          Length = 284

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 104/249 (41%), Gaps = 36/249 (14%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR---SLSGIKSFLKYLKKRKITTESNIL 114
           +  + + QL+  E+    S+R    I   ++ R    LSG+  F   +K  + + ++   
Sbjct: 51  LGDKVVSQLTKRELMEHRSQRLADGISAATINRDLYRLSGM--FSALIKIEEFSGQNPQH 108

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            +  L + N     L+ ++   L+             +      I  L    G R  E  
Sbjct: 109 GLPPLAEKNPGMTFLDTEEINRLL-----------AVLSGDERLIALLCLSTGGRWGEVS 157

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           +LT   +++++ T  ++ K  K R +P+   +++           ++  N    LF    
Sbjct: 158 TLTAAQVVNNRVTF-LETKNGKKRTIPISAELQE-----------EVKTNASGKLF---- 201

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              ++ G F   +R +     LP     H LRH+FA+H + NGG++ ++Q ILGH  +  
Sbjct: 202 --KVDYGKFCETLRMV--KPDLPRGQATHVLRHTFASHFMMNGGNIIALQQILGHANIQQ 257

Query: 295 TQIYTNVNS 303
           T  Y +++ 
Sbjct: 258 TMAYAHLSP 266


>gi|299822017|ref|ZP_07053904.1| tyrosine recombinase XerC [Listeria grayi DSM 20601]
 gi|299816645|gb|EFI83882.1| tyrosine recombinase XerC [Listeria grayi DSM 20601]
          Length = 309

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 81/211 (38%), Gaps = 17/211 (8%)

Query: 103 KKRKITTESNILNM--RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
               +  ++    +  +  K     P+ LN+ +   ++  + L       W        +
Sbjct: 90  VDEGLIAKNPTRKIIIKGRKAREKKPKFLNQFEVQAMLKQLKLTNEINWDW-------FI 142

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI------RIVPLLPSVRKAILEYY 214
            L+   GLR SEAL+LTP +    +  L +    +        +      S RK  +++ 
Sbjct: 143 LLVAKTGLRFSEALALTPNDFDFSKQKLAVSKTWNYKGTIGEFQPTKNNSSKRKIQIDWQ 202

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
               F   +    P         +        ++ L    G+P+  T H LRH+ A+ LL
Sbjct: 203 TAMQFSQLIKEIDPDKPIFVKSRVFNSTVNNRLKTLCVEAGIPI-ITIHGLRHTHASLLL 261

Query: 275 SNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
             G  + S+ + LGH  ++TTQ  Y ++  +
Sbjct: 262 FAGVSIASVATRLGHSSMTTTQETYLHIIQE 292


>gi|16799599|ref|NP_469867.1| hypothetical protein lin0524 [Listeria innocua Clip11262]
 gi|16412964|emb|CAC95756.1| lin0524 [Listeria innocua Clip11262]
          Length = 309

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 83/213 (38%), Gaps = 21/213 (9%)

Query: 103 KKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
               + +++    +    +  +   +  + LN+ +   L+  + L       W       
Sbjct: 90  VDEGVISQNPTRKIVIKGKTPRPKKA--KFLNQFEVQALLKELNLKEDINWDW------- 140

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212
            + L+   GLR SEAL+LTP +    +  + I    D   +             RK  ++
Sbjct: 141 FILLIIKTGLRFSEALALTPSDFDFSKQKIIINKTWDYKMVTGSFQPTKNESSNRKIQID 200

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +     F   + ++ P         +        ++ L     +P + T H+LRH+ A+ 
Sbjct: 201 WQLAMQFSQLIKMKDPDKPIFVKSRVFNSTINNRLKVLCENANIP-TITVHSLRHTHASL 259

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           LL  G  + S+ + LGH  ++TTQ  Y ++  +
Sbjct: 260 LLFAGVSIASVANRLGHSSMTTTQETYLHIIQE 292


>gi|298374771|ref|ZP_06984729.1| integrase [Bacteroides sp. 3_1_19]
 gi|301308464|ref|ZP_07214418.1| integrase [Bacteroides sp. 20_3]
 gi|298269139|gb|EFI10794.1| integrase [Bacteroides sp. 3_1_19]
 gi|300833934|gb|EFK64550.1| integrase [Bacteroides sp. 20_3]
          Length = 310

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/308 (16%), Positives = 109/308 (35%), Gaps = 40/308 (12%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +  ++L +  + ++  L  +   S    +SY+     FL F          +    ++  
Sbjct: 1   MKQYDLAEGMRMYIARLREQGRYSSA--KSYQDALNSFLRFCGQ------EVIPYTRIDR 52

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK------ITTESNILNMRNLKKS 122
             +  +    R ++    ++   +  I+       +           +   + +++ K+ 
Sbjct: 53  EMLLRYQDYLRDRECSWNTVSTYMRRIRRVYGLAMENGEAPFSRYLFKGIFMGVKS-KQK 111

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            +LP      ++L L    L+    +   +     A+  +   CG+   +   L   +I 
Sbjct: 112 KALPT-----ESLRL----LMTAPLDDSGLRKTQRALCLMFLFCGMAFVDFAHLKKSDI- 161

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
                LR   +     ++  +  V K +L           L     LF  + G       
Sbjct: 162 -RNGVLRYNRQKTGTPMLVEIQPVAKELLAALMT----DTLRDSPYLFTFLSGTKTGEEA 216

Query: 243 FQRY----------IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           F+ Y          +++L    G+    T++++RHSFAT L   G  +  I  +LGH  +
Sbjct: 217 FREYTSALADFNSSLKELANACGVTEMVTSYSIRHSFATTLKEQGVPIEMISELLGHQSI 276

Query: 293 STTQIYTN 300
            TTQIY  
Sbjct: 277 KTTQIYLK 284


>gi|89147392|gb|ABD62556.1| integrase [uncultured bacterium]
          Length = 163

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 37/93 (39%), Positives = 48/93 (51%)

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           A  E+     F        P    +R   L     QR I+   R  G+    T HTLRHS
Sbjct: 70  AAKEWGWQYVFPSGTLSTDPRSGKVRRHHLADETIQRAIKAACRRAGITKHATPHTLRHS 129

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           FATHLL  G D+R++Q +LGH  ++TT IYT+V
Sbjct: 130 FATHLLQGGYDIRTVQELLGHENVATTMIYTHV 162


>gi|283851760|ref|ZP_06369038.1| integrase family protein [Desulfovibrio sp. FW1012B]
 gi|283572880|gb|EFC20862.1| integrase family protein [Desulfovibrio sp. FW1012B]
          Length = 296

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 92/251 (36%), Gaps = 12/251 (4%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +  ++   + +F +    +++  +++   LS ++  L   ++  +  ++ + N    K  
Sbjct: 45  VENITNKNLLSFRAALVKKRLSPQTITHCLSLLRRVLHRAQQWDLL-DAKLPNFDMPKFD 103

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           N   R L + +A TL+  + L      K     + ++L L    GLR  E  SL P +  
Sbjct: 104 NKRVRFLTKSEANTLLVELSL------KSQLWHDISLLAL--HTGLRAGEIFSLRPSHFD 155

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
              S L I            L +  + IL+       D          + +         
Sbjct: 156 QPNSALYIFETKSNRNRSIPLNATARHILKANCAGSTDFVFKEHDRQIKNVNRIFSTAVQ 215

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             ++    +           HTLRH+FA+ L+  G  L  +  +LGH  L  T  Y ++ 
Sbjct: 216 TCQFNTPTQDR---RQRVVFHTLRHTFASWLVQAGTPLIVVSQLLGHKSLQMTSRYAHLA 272

Query: 303 SKNGGDWMMEI 313
              G   +  +
Sbjct: 273 PTQGATAVKAL 283


>gi|282879691|ref|ZP_06288421.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281306360|gb|EFA98390.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
          Length = 409

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 53/286 (18%), Positives = 103/286 (36%), Gaps = 23/286 (8%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSLKRSLS 93
           ++  Y     + L F+      K++     QL+   I  F           + S     +
Sbjct: 133 SMAGYHSTRIRLLEFIQKKY--KVSDLAFSQLTENFIHEFQQYFLGECGFQESSFYNVAT 190

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            +K+  +   +  +        ++  K +  LP+AL+  +   L          E +   
Sbjct: 191 HLKTVCRLAYREGVADGLLFDKVKISKGNKKLPKALDRGEFEKLKTLHFEDLEEEMETA- 249

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
                I       G    + + L   + + DD+ +L ++    K  +   +  + +AI  
Sbjct: 250 ---RDIFLFACYTGAAYCDLMELDKSHLVRDDEGSLWLKFNRQKTSVPCRVKLLPEAIR- 305

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                         LP         +    +Q Y++ LR   G+P   T HT RH+FAT 
Sbjct: 306 -LMEKLHSDERETLLPF--------MGYATYQSYLKALRLRAGIPFPFTTHTARHTFATL 356

Query: 273 L-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           + L  G  + ++  +LGH  +S T+ Y  V  +     + E +D+ 
Sbjct: 357 ITLEQGVPIETVSKMLGHSYVSMTERYAKVTPQ----KLFEEFDRF 398


>gi|300861379|ref|ZP_07107465.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|300849171|gb|EFK76922.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|315145852|gb|EFT89868.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2141]
          Length = 309

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 85/213 (39%), Gaps = 21/213 (9%)

Query: 103 KKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
               + +++    +    +  +   S  + LN+ +   L+  + L       W       
Sbjct: 90  VDEGLISKNPTRKIVIKGKAPRPKKS--KFLNQFEVQALLKELELGERLNWDW------- 140

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212
            + L+   GLR SEAL+LTP++    +  + I+   +         S       RK  ++
Sbjct: 141 FILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGFFQSTKNESSKRKVQID 200

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +     F   +    P+        +        ++ L +   +P+  T H+LRH+ A+ 
Sbjct: 201 WQTAMQFSQLIRNMPPMEPIFVRGRVFNSTINSRLKVLCKRAQIPV-ITVHSLRHTHASL 259

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           LL  G  + S+ + LGH  ++TTQ  Y ++  +
Sbjct: 260 LLFAGVSIASVATRLGHSSMTTTQETYLHIIQE 292


>gi|310829293|ref|YP_003961650.1| hypothetical protein ELI_3731 [Eubacterium limosum KIST612]
 gi|308741027|gb|ADO38687.1| hypothetical protein ELI_3731 [Eubacterium limosum KIST612]
          Length = 304

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 62/316 (19%), Positives = 124/316 (39%), Gaps = 48/316 (15%)

Query: 19  QNWLQNLE-IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           + WL+  +   +G S  T +SYE      L F+            + +++  + R F   
Sbjct: 8   EAWLRQRKPKVKGSSLKTYKSYEQ--AHILPFMGSV--------PLIEITAKKQRKFKKW 57

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R + +  ++++  L+ + S L+  +K+ I        ++   K   +P           
Sbjct: 58  LR-KSLARKTVRDILAYLHSILREAEKKGIKVCVQTPKIKVYPKEKKVPGY--------- 107

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
                  ++   K    ++  IL  +   GLR+ E L L  ++I  + + L ++    ++
Sbjct: 108 -GEHKALSAALQKSQAPQDMGILLAM-STGLRLGEVLGLRLKDIDFETNVLHVRRNRQRV 165

Query: 198 ---------------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
                                R +P+   ++ A++ Y D        + + PL     G+
Sbjct: 166 CNPKTGKHSVVLQSPKTRASRRDIPIHTELKAALIRYLDT---QGKNDPKRPLIAAPSGR 222

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TT 295
             +    QR   Q++ ++GL    T H+LRHSF T  L  G D+R++   LGH  ++ T 
Sbjct: 223 AYDARTLQRRFDQIKAHMGLNPRITFHSLRHSFVTRALELGADMRAVSGFLGHSSIAFTL 282

Query: 296 QIYTNVNSKNGGDWMM 311
             Y++  +      M 
Sbjct: 283 NCYSHCVTGYKRQQMA 298


>gi|295841232|dbj|BAJ07012.1| integrase [uncultured bacterium]
          Length = 393

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 57/280 (20%), Positives = 99/280 (35%), Gaps = 60/280 (21%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSLKRS 91
             T ++Y     +F  FL     E        + +  + R+F+      QK+   + + +
Sbjct: 136 PRTEKTYLHWVDRFFRFLGSRPPE--------EFTSHQARSFLEHLVLEQKLAVNTQRLA 187

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L+ +  F   + +  +    +       K    LP  L+ ++  +++             
Sbjct: 188 LNTLAYFFGEVLRSPLGDLGDFARSSRPK---RLPVVLSRREIESIL-----------AV 233

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR----IVPLLPSV 206
            +     IL LLYG G+R+ E + L  ++I  D+  + I+ GKG K R         P +
Sbjct: 234 TEGIYILILGLLYGSGMRLMETVRLRVKDIDFDRRQILIRDGKGSKDRVTVLPERFGPPL 293

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFR--------------------------------GIR 234
            K +     L   DL+       F                                    
Sbjct: 294 EKHLARMKVLHERDLDRGGGAATFWPALSRKFPTAPKKWWWQYVFPASRLTVEAGTGRQV 353

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
              L+    Q  +R+  R  G+P   T H+LRH+FATHLL
Sbjct: 354 RHHLHHSAVQHALREGVRRSGIPKRVTCHSLRHTFATHLL 393


>gi|282877848|ref|ZP_06286660.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281300059|gb|EFA92416.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 409

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/286 (18%), Positives = 100/286 (34%), Gaps = 23/286 (8%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSLKRSLS 93
           ++ SY         F+      K++     QL+   I  F           + S     +
Sbjct: 133 SIASYHSTRIHLQEFIQKKY--KVSDLAFSQLTENFIHEFQQYFLGECGFQESSFYNVAT 190

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            +K+  +   +  +        ++  K +  LP+AL+      L          E +   
Sbjct: 191 HLKTVCRLAYREGLADILLFDKVKISKGNKKLPKALDRGAFEKLKTLHFEDLEEEMETA- 249

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
                I       G    + + L   + + DD+ +L ++    K  +   +  + +AI  
Sbjct: 250 ---RDIFLFACYTGAAYCDLMELDKSHLVRDDEGSLWLKFNRQKTGVPCRVKLLPEAIR- 305

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                         LP         +    +Q Y++ LR   G+    T HT RH+FAT 
Sbjct: 306 -LMEKLHSDERETLLPF--------MGYATYQSYLKALRLRAGISFPFTTHTARHTFATL 356

Query: 273 L-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           + L  G  + ++  +LGH  +S T+ Y  V  +     + E +D+ 
Sbjct: 357 ITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQ----KLFEEFDRF 398


>gi|237738614|ref|ZP_04569095.1| phage integrase [Fusobacterium sp. 2_1_31]
 gi|229424097|gb|EEO39144.1| phage integrase [Fusobacterium sp. 2_1_31]
          Length = 371

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 59/313 (18%), Positives = 130/313 (41%), Gaps = 34/313 (10%)

Query: 18  RQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
            ++W+    +IE  +S  T   YE   R  L+  +   ++        Q++  +++ + +
Sbjct: 77  FKDWIFNFKKIE--VSPNTFYEYEASYRLRLMNYSIARKKA------NQITLKDLQQYFN 128

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-PRALNEKQAL 135
           + + +     ++K++   I S +K+   + I  +     +   K +        ++++  
Sbjct: 129 ELQ-KDFTANTIKKTYIQIHSCIKFAIIQGIMMKDFCPGVTLQKITKKENINVFSKQE-- 185

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
                ++L T  +   +D     ++Y  +  GLR+ E L L   +I D+   +  Q + +
Sbjct: 186 ---QEMVLRTLDKRDIVD----CLIYFTFYTGLRLGEVLGLQWSDIKDNMVKITRQYRRN 238

Query: 196 KIRIVPLLP---SVRKAILEYYDLCPFDL---------NLNIQLPLFRGIRGKPLNPGVF 243
                          K +          L         ++  Q  L     GKP+ P   
Sbjct: 239 VDVDKVDDRKLTYTFKELKTKNSAREIPLPDKVQELLKDIPRQGNLIFSNLGKPIEPKKP 298

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVN 302
           QR I  + + L +P   + H++RHS+AT L      ++++Q +LGH  ++TT  IYT+V 
Sbjct: 299 QRRIASICKKLNIP-HRSFHSIRHSYATRLFEMDIPIKTVQVLLGHGDIATTMDIYTHVM 357

Query: 303 SKNGGDWMMEIYD 315
            +   + + ++ +
Sbjct: 358 KEKKLEVLDKLNN 370


>gi|209560015|ref|YP_002286487.1| Prophage NZ131.3 probable integrase [Streptococcus phage NZ131.3]
 gi|209541216|gb|ACI61792.1| Prophage NZ131.3 probable integrase [Streptococcus phage NZ131.3]
          Length = 378

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 54/301 (17%), Positives = 114/301 (37%), Gaps = 33/301 (10%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T++ Y     +   F+            ++ +    ++ FI   + +   D ++    
Sbjct: 82  ARTMKVYRHPIEKIKDFIGDDVL-------VKNIDARLLQKFIDYLKDR-YSDNTINLIK 133

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +   L Y  + +    + + N+   K+     + L E + L    N  +         
Sbjct: 134 QPLNMMLDYAVRMEYIMSNPMKNVVTPKRKKMSKKQL-EDRYLETEQNQKIIEQLRNPIY 192

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI--------------- 197
               +    +++  G+R  E L+L   +I  ++  ++I+   D                 
Sbjct: 193 GNHIANFSEIIFLTGMRPGELLALRWDHIDFEKLKIKIEYTLDYTTNGHANAELGSVKND 252

Query: 198 ---RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
              R + +   V++ ++E  +    + N      +F   +GK L+     R I++    L
Sbjct: 253 GSYRTIDIPLRVKELLVEELN--YQNTNDLRSDFVFITNKGKHLSINTINRRIKKTSEKL 310

Query: 255 -GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMME 312
            G+    T+H+ RH+  T L   G  L+SI   +GH  ++TT ++YT+   K G   M +
Sbjct: 311 YGIV--ITSHSFRHAHITLLAELGIPLKSIMDRVGHTDVNTTIKVYTHATDKIGKQMMDK 368

Query: 313 I 313
           I
Sbjct: 369 I 369


>gi|315441530|ref|YP_004074407.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315443020|ref|YP_004075899.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315261323|gb|ADT98064.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315265185|gb|ADU01926.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
          Length = 393

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 65/338 (19%), Positives = 112/338 (33%), Gaps = 70/338 (20%)

Query: 23  QNLEIERGL-SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-- 79
           + +E  R L S  T++ Y     Q+  FL    +        R +      AF+S +R  
Sbjct: 31  EWIEAHRHLWSPNTVRGYATSLAQWWSFLEQRGQS----DGWRDVGVPAFTAFLSWQRNG 86

Query: 80  ----------TQKIGDRSLKRSLSGIKSFLKYLKK-----------RKITTESNILNMRN 118
                      Q     +L+  L+ + SF ++ +            R    +     +  
Sbjct: 87  RTVEHRLAESDQAPTAATLEVRLAALISFYRWHQAVSGVAVAGQLLRGTPRQRPARGLLA 146

Query: 119 LKKSNSLPRALN-----------------EKQALTLVDNVLLHTSHETKWID-ARNSAIL 160
              + S P A +                  +Q   ++D   +  +    W    R+  + 
Sbjct: 147 HLDARSAPAASSLVRVRRDRRRDRPPLLLPEQIQAVLDGCAVFDTESGSWQGNLRDRFVF 206

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQS---TLRI----------QGKGDKIRIVPLLPSVR 207
            LL   G+R+ EAL L     +  +     ++I          + K  + R V +   + 
Sbjct: 207 ALLAETGMRLGEALGLRIGEFVLGRGDTAYVQIVPRSDNPNGARVKMMRPRRVYVGADLE 266

Query: 208 KAILEYYDLCPFD-----LNLNIQLPLFRGIRGKP----LNPGVFQRYIRQLRRYLGL-P 257
           +   +Y            + L    PL   +   P    L     +  +  LRR  G+ P
Sbjct: 267 RLFADYLTDIACRAAESGIGLMDTSPLLVNVARPPLLAALRETTVREKVATLRRR-GIGP 325

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           L  T H  RH+ AT LL  G     +   LGH  + TT
Sbjct: 326 LGWTPHWFRHTHATALLLAGTPEWVVSRRLGHAHVQTT 363


>gi|265756480|ref|ZP_06090686.1| integrase [Bacteroides sp. 3_1_33FAA]
 gi|263233668|gb|EEZ19283.1| integrase [Bacteroides sp. 3_1_33FAA]
          Length = 407

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/299 (16%), Positives = 108/299 (36%), Gaps = 25/299 (8%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
            +  SY       L    F     +       L+    +++      +     +   +L 
Sbjct: 123 NSTSSYRQSKTSQLNLREFIGLRGMNDIAFEDLTEEFGKSYKLFLIGKGYSASNTNHNLC 182

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            ++  +     R +   + + ++   KK +   R ++    L +++     T  E K ++
Sbjct: 183 WLQRLVYIAVDRGLLKFNPLEDVGYEKKGSPKRRHISRNDLLLIME-----TPMEDKALE 237

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLR-IQGKGDKIRIVPLLPSVRKA 209
                +       GL   +  +L P +I    D +  +R  + K +    +PL P   + 
Sbjct: 238 LARR-MFVFSSLTGLAYVDLRNLYPHHIGMTADGRKYIREKRAKTNNEAFIPLHPIAEQI 296

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +  Y          +   P+F        +          L   LG+  + TAH  RH+F
Sbjct: 297 MSLYNT-------ADDSKPVFPLS-----SRDSMWFEFHSLGVALGINENLTAHVARHTF 344

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
             +++++G  + SI  ++GH  L +TQ+Y  +        M ++  +     T++  +N
Sbjct: 345 GVNMVTSGISMESIAKMMGHSNLRSTQVYAVITDDKISKDMDKLMQR---RETKETDQN 400


>gi|332885141|gb|EGK05392.1| hypothetical protein HMPREF9456_02593 [Dysgonomonas mossii DSM
           22836]
          Length = 480

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 114/298 (38%), Gaps = 20/298 (6%)

Query: 32  SKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           SK TLQ YE   R+   F+  +Y    I+++ +  +       ++    T K  + +  +
Sbjct: 129 SKETLQKYEVAYRRMAGFIKEYYNVSDISLKEVNHMFLHNFEIYL--MTTCKCKENTTAK 186

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L   ++ +   K           N + ++   +    L +++    +D ++       +
Sbjct: 187 FLQRFRTIIIMAKNNGWIHIDPFANFK-IRFKKTDRGYLTQQE----IDIIMCKKFASER 241

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRIVPLLPSVRKA 209
               R+  I       GL   +  +L   NI       L I GK +K  +   +P +   
Sbjct: 242 LERVRDIFIFSCF--SGLAYIDVKNLRQSNIRTSFDDGLWIMGKREKTGVNYNVP-LLDI 298

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
             +  +     L  +  LP+        ++      Y++++    G+  + + H  RH+F
Sbjct: 299 PKQIIEKYSGKLPDDKALPV--------MSNQKMNEYLKEIGTICGIDKNLSYHLARHTF 350

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
           AT  L+ G  + S+  +LGH  + TTQIY  +      + M    ++     T+   K
Sbjct: 351 ATLTLTKGVSIESVSKMLGHTNIKTTQIYARITDVKVSNDMASFAEKLEEKRTKSKSK 408


>gi|296169384|ref|ZP_06851007.1| XerC/XerD family integrase/recombinase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295895934|gb|EFG75626.1| XerC/XerD family integrase/recombinase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 388

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 55/361 (15%), Positives = 115/361 (31%), Gaps = 62/361 (17%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
             +++     +L++L      ++ T ++Y      FL + A                +  
Sbjct: 21  DLQVVDVADAYLRHLRFGHDAAESTTKAYAHSIALFLRWCARSGRSWQAGVE----GFAL 76

Query: 71  IRAFISKRRTQK----------------IGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
              +++  R+                   G   +   L+ ++  + +           + 
Sbjct: 77  FMTWLAHARSSVDDAASVVVAGPGAAAVRGPSRINGVLTAVRGMVVHAVATGHGAAGLVS 136

Query: 115 NMRNLKKSNSLP---RALNEKQALTLVDNVLLHTSHET--------------KWIDARNS 157
            +  +     LP   R  + + A  +     L     T                  AR+ 
Sbjct: 137 MLYEVADDRDLPAEARGEDGRMAWRMRARHRLREPETTIDRASDEQIVALLRACRSARDR 196

Query: 158 AILYLLYGCGLRISEALSLTPQN-----------IMDDQSTLRI----------QGKGDK 196
            I+ L+   GLR  E   L   +              +++ L +            K  +
Sbjct: 197 LIVLLMARGGLRRGEVCGLRRSDVHLLVDSRRLGCDVERAHLHVVRRDDNPNQAWAKSRR 256

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRR 252
            R+VPL   V +    Y                   LFRG  G P+ P      +    R
Sbjct: 257 ERVVPLDFLVVQLFDVYEFERMRVTGAADSDFVFVNLFRGRIGAPMRPDAIGELMAAASR 316

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             GL ++   H LRH+F ++++  G  +  +  ++GH  +S++Q+Y + +S      +  
Sbjct: 317 RAGLDVAVRPHQLRHAFGSNVVDAGAGIDVVADLMGHAAVSSSQVYLHPDSSRLRAAVDA 376

Query: 313 I 313
           +
Sbjct: 377 V 377


>gi|108799567|ref|YP_639764.1| phage integrase [Mycobacterium sp. MCS]
 gi|119868677|ref|YP_938629.1| phage integrase family protein [Mycobacterium sp. KMS]
 gi|108769986|gb|ABG08708.1| phage integrase [Mycobacterium sp. MCS]
 gi|119694766|gb|ABL91839.1| phage integrase family protein [Mycobacterium sp. KMS]
          Length = 373

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 73/328 (22%), Positives = 114/328 (34%), Gaps = 52/328 (15%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--KIGDR 86
           RGL   T+++      +F+ F   Y                ++  F+++ R+Q   I   
Sbjct: 43  RGLEIDTIKARCRVIARFVEFTNEYPWRWR---------ANDVDQFLAELRSQATPIALS 93

Query: 87  SLKRSLSGIKSFLKY---------LKKRKITTESNILNMRNLKKSNS-----LP---RAL 129
           +L+   + I  F  Y             +   +     +             +P   RA 
Sbjct: 94  TLRSYSNAISMFCSYVSDSRYGWVDFCERQFRDVPSQIVFEWNTPQHTTDDAVPPGRRAF 153

Query: 130 NEKQALTLVDNVL-----LHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNI-- 181
            + +   L D V       H     +W+ A R+S    + Y  GLR  E + L   +   
Sbjct: 154 TKAELQHLFDVVDDFVDDAHRKGSKRWLTALRDSTAFKIGYAFGLRRRELVMLDLTDFGP 213

Query: 182 --------MDDQSTLRIQG--KGDKIRIVPL-----LPSVRKAILEYYDLCPFDLNLNIQ 226
                        T+R     KG   R   +      P V   +  +            +
Sbjct: 214 NPHVPRYGNFGAMTVRWAKGTKGSGPRRRTVLTSPEFPWVVDLLQYWCFEGRELFATADR 273

Query: 227 LP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
            P L+   RG  L  G   R     RR  GLP   + H LRHS+ THLL  G D   +Q 
Sbjct: 274 SPALWPSERGDRLTLGALGRSFTAFRRLAGLPPELSLHALRHSYTTHLLEAGYDPLFVQQ 333

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            LGH   STT +YT+V+S      + ++
Sbjct: 334 QLGHSYASTTSLYTSVSSDFKQKVIQQM 361


>gi|260513015|gb|ACX42429.1| class 1 integrase [Escherichia coli]
          Length = 177

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 84/195 (43%), Gaps = 28/195 (14%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVNWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIR 198
             T+ ++ GKG K R
Sbjct: 162 HGTIIVREGKGSKDR 176


>gi|241895633|ref|ZP_04782929.1| integrase [Weissella paramesenteroides ATCC 33313]
 gi|241871211|gb|EER74962.1| integrase [Weissella paramesenteroides ATCC 33313]
          Length = 358

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 61/321 (19%), Positives = 123/321 (38%), Gaps = 29/321 (9%)

Query: 1   MEGNNLPEIVSFE----LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE 56
           ME       VSF+    L +   +W    +++  +S+ T   Y             Y EE
Sbjct: 44  MENYKAKGFVSFDESQPLSEYFHDWYTTYKLD--MSRATQMWYHTT--------ELYIEE 93

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
            +   T+  L+    + F++    +K  D ++ +  + +   +K      I  +  I  +
Sbjct: 94  HMQNVTLGSLNRPTFQRFLNTL-AKKYSDETVNKVRNIMHQAIKSAIYDDIIFKDPIDGI 152

Query: 117 -RNLKKSNSLP-RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
               K+  S   + L E Q   LVD +     +     D     ++ L    G+R  EA 
Sbjct: 153 YAKGKQGKSSDLKYLEEPQMKALVDYIQSIDLNVRTDSDM----MILLALNTGVRYEEAA 208

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY-----YDLCPFDLNLNIQLPL 229
           +LT Q++   Q  + I    +++      P  + ++ +                  +   
Sbjct: 209 ALTWQDMN--QGVISINKAWEQVERAIKEPKTKSSVRKISVPATLIEQFHAWKRPEKATD 266

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F     +P+      + ++   + +  P   T H LRH+ A+ LLS+G D++ + + LGH
Sbjct: 267 FVFGMPRPITSAAVNKRLKVDLQAIKSPKIITFHGLRHTHASWLLSHGVDIQYVSARLGH 326

Query: 290 FRLSTT-QIYTNVNSKNGGDW 309
             +  T ++YT++      + 
Sbjct: 327 KSVGMTLRVYTHMLDNLKREE 347


>gi|325268702|ref|ZP_08135331.1| integrase [Prevotella multiformis DSM 16608]
 gi|324988946|gb|EGC20900.1| integrase [Prevotella multiformis DSM 16608]
          Length = 395

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 97/285 (34%), Gaps = 26/285 (9%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           +SY      F+        + +    +  L+      +    + +     S K++L  + 
Sbjct: 128 RSYHRQLESFVE------SKGVADIPLTTLTMEFFDDYRIHFKRKGYALSSTKQNLFWLS 181

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
             +     ++    +   + +  +    + R L++     L+   L +   E        
Sbjct: 182 RLMYRAVSQQTIRYNPFEDAKYERVERKI-RCLSKTDIACLLAMPLQNEQAE------FV 234

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----QGKGDKIRIVPLLPSVRKAILE 212
             +       G   ++   L   +I  + + +R     + K D   I PL P   + +  
Sbjct: 235 RRLFLFSVFTGQAFADVSKLRYCDIETNNTGIRYIRQYRKKTDVESITPLHPIAEQILSL 294

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           Y        +     P+F       ++      +++ +    G+  S + H  RHSF   
Sbjct: 295 Y-----PLKDRKEDSPIFATS----MSRIQIGMHLKTIGLACGIRQSLSFHVDRHSFGAL 345

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            L  G  + SI  ++GH  +++TQIY  +        M  + ++ 
Sbjct: 346 TLEAGIPIESIAKMMGHASIASTQIYAQITDNKISKDMDRLIEKC 390


>gi|200388050|ref|ZP_03214662.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|199605148|gb|EDZ03693.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
          Length = 337

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 62/314 (19%), Positives = 112/314 (35%), Gaps = 48/314 (15%)

Query: 17  ERQNWLQNLEIERGLSKLTLQS---YECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEI 71
           E + WL   +  R LS+L       Y          ++        +      Q++  + 
Sbjct: 47  EEKPWLGEKQDNRRLSELIELWHDLYGRTLADSDRMMSKLKGICAGMGNPIAAQITAADF 106

Query: 72  RAFISKR----------RTQKIGDRSLK---RSLSGIKSFLKYLKKRKITTESNILNMRN 118
             +   R          R   I  +++    R+LS +  F    K    +  + +  +  
Sbjct: 107 SKYREGRLKGEIPDVNGRCMPIQPQTVNHEQRNLSAV--FGTLKKLGHWSLPNPLSGIPT 164

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            K    +   L  ++  TL+   L  ++  +  I      I  +    G R SEA +L  
Sbjct: 165 FKVDEKMVSFLYPEEIKTLLQ-YLSESNSPSVLI------IAKICLATGARWSEAENLEG 217

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
             +   + T +   K  K+R +P+   +   I                 P  RG    P 
Sbjct: 218 SQVTPYRITYK-NTKSRKVRSIPISKELYNEI-----------------PKKRGQLFTPC 259

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
               F+R + +      LP     H LRH+FA+H + NGG++  ++ ILGH  +  T IY
Sbjct: 260 -RKTFERTVAKAGIE--LPEGQCTHVLRHTFASHFMMNGGNILVLKEILGHSDIKMTMIY 316

Query: 299 TNVNSKNGGDWMME 312
            +    +  D + +
Sbjct: 317 AHFAPTHLEDVITK 330


>gi|78066452|ref|YP_369221.1| Phage integrase [Burkholderia sp. 383]
 gi|77967197|gb|ABB08577.1| Phage integrase [Burkholderia sp. 383]
          Length = 588

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 65/359 (18%), Positives = 121/359 (33%), Gaps = 63/359 (17%)

Query: 23  QNLEIERGLS----KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            +  +E  L+      T+++Y  +  + L++           Q +  L+  +  A+ +  
Sbjct: 228 DHQAVEAWLALHEGTHTVRAYRREAERLLLWAIVERR-----QPLSSLTTDDAIAYRAFL 282

Query: 79  R-----------------------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           R                       T  +  RS   +L+ +++   +L  +     +    
Sbjct: 283 RHPTPAARWIGPPRPRTTPAWRPFTGHLTARSTAYALAVLRALFGWLVDQHYVVLNPFAG 342

Query: 116 MRNLKKSNSLP----RALNEKQALTLVDNVL-LHTSHETKWIDARNSAILYLLYGCGLRI 170
           +     +   P    RALN ++   +      L  +  T     R   +L   Y  GLR 
Sbjct: 343 VTVRGGAARAPFDTGRALNGREWKIVRAAADQLERTGWTAPAAERLRFVLDFGYATGLRA 402

Query: 171 SEALSLTPQNIMDDQS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLC---PFDLNLN 224
            E ++ T  +I  D      L++ GKG K   V L P  R A+                +
Sbjct: 403 QELVAATLGDITADARGALWLQVTGKGAKSGRVALPPLARDALRRALKARGLPVMRTRWH 462

Query: 225 IQLPL-------FRGIRGKPLNPGVFQRYIRQLRR------------YLGLPLSTTAHTL 265
              PL        RG R   ++    ++ + +  R                 L  + H L
Sbjct: 463 PATPLVTALNSERRGKRHAGISAARLRQVLGECFRDTAERVSTRNPPLAEKLLHASPHWL 522

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           RH+ ATH L  G +L  ++  L H  ++TT  Y +         +   + +  P  +Q 
Sbjct: 523 RHTHATHALDAGVELVIVRDNLRHASVATTSTYLHGEEAKRARQVGAAFQR-QPRRSQH 580


>gi|145297530|ref|YP_001140371.1| phage integrase family protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850302|gb|ABO88623.1| phage integrase family protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 408

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 57/317 (17%), Positives = 129/317 (40%), Gaps = 32/317 (10%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ++ +   E+  +EL +     L  L      +K   +S++ D ++F   L      ++  
Sbjct: 99  LKEDKRQELTLYELFQ-----LHYLP----YAKHHKRSWQNDEQRFRDHLQPPMGSRL-- 147

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             + +++  + +A  +   +Q     +  R  + +K+ L +  +     +  ++ ++ L 
Sbjct: 148 --LSEINLEQGQALQTSLMSQ-CKPATNNRITTLLKAILTWSVRMGYLEQHPLVYLKTLP 204

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           ++N   R L++ +   L    +   + E ++        + LL   GLR  E      ++
Sbjct: 205 ENNQRTRFLDKAEIRRL---FMAADADENRYAGQY----VKLLLLTGLRKDELRLAKWEH 257

Query: 181 IMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPL 238
           I     TL I   K  K RI+ +     + + +   +            LF G +  +PL
Sbjct: 258 IDKVHQTLFIPHTKNGKSRILHMNHMAMQVLQDTPVIA-------GNAYLFPGQKPGQPL 310

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           N     +   ++ +   +      HT RHS A  ++S+GG L  +Q+ LGH    ++Q Y
Sbjct: 311 N--NVTKPFNRMLKRAQIEGQVCIHTCRHSVAALIVSSGGTLYDVQAQLGHSSSQSSQRY 368

Query: 299 TNVNSKNGGDWMMEIYD 315
            ++++        ++ +
Sbjct: 369 AHLHASRLRHTSAQVAN 385


>gi|313634565|gb|EFS01051.1| toxin-antitoxin system, toxin component, PIN family [Listeria
           seeligeri FSL N1-067]
          Length = 381

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 58/288 (20%), Positives = 98/288 (34%), Gaps = 27/288 (9%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
           E    +  IF   +     + + I ++     +  I+     K    S KR  +      
Sbjct: 89  ESTLERTKIFFNHHILPVFSDKFIDKIDIHFCQQVINAW--SKSNPTSYKRLKNLTSRVF 146

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           KY     +        +   +          E++ +T  D   L +  +T   D      
Sbjct: 147 KYAISLHLIESDPFAFVVVPRGE----MIEKEEKDITFYDKYELRSFLDTVKDDTFKYTF 202

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------------GDKIRIVPLL 203
            YLL   GLR SEAL+LT Q++  +   L I                       R + + 
Sbjct: 203 FYLLAFTGLRKSEALALTWQDVDLNNKRLYINKTLSRGEHARILVNTTKTKAGKRDISID 262

Query: 204 PSVRKAILE---YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
            S    + +   Y       L L+    +F        NP     ++  + ++       
Sbjct: 263 ASTVDVLKKWKSYQRGNHHILRLDKVQIIFDNKGNY-YNPSSTYSWLDNIFKHHTELKKI 321

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGG 307
           T+H  RH+ A+ L   G  L+ +Q  LGH  + TT  IYT+V  +   
Sbjct: 322 TSHGFRHTHASLLFEAGASLKDVQERLGHADIQTTSNIYTHVTQEKKD 369


>gi|301311826|ref|ZP_07217748.1| integrase [Bacteroides sp. 20_3]
 gi|300829928|gb|EFK60576.1| integrase [Bacteroides sp. 20_3]
          Length = 405

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 119/291 (40%), Gaps = 22/291 (7%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLK 89
            + +T++ Y+   +  +  +    + K+    +R+++   +R F    + +K     ++ 
Sbjct: 129 YADITVRRYDNCLKYLMELVKR--DYKVDDMLLREVNGELVRKFDLYLKAEKHCAQNTVI 186

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R +   K  +      +  T++    ++  +   +  + L++ +      N +     + 
Sbjct: 187 RYMKCFKKVINLAIANEWLTKNPFAGIKFHEVEVN-KQFLSQAEI-----NRIWQKEFKI 240

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRIVPLLP--SV 206
           + ++      ++ +Y  GL   +  +L  ++I +D    L I    +K   +  +P  S+
Sbjct: 241 ERLELVRDVFIFCVY-TGLAFIDVYNLRSEHISEDSNGNLWIVKAREKTNNLCNIPLLSI 299

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            K IL+ Y   P+ L+    LP+    +           Y++++    G+  + T HT R
Sbjct: 300 PKQILDKYKDNPYCLDKGTLLPVPCNQKM--------NSYLKEIADLCGIKKNLTTHTAR 351

Query: 267 HSFA-THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           HSFA    L+N   L ++  +LGH     TQ Y  V  +     M  +  Q
Sbjct: 352 HSFASVIALANNVSLPNVAKMLGHSSTRMTQHYAKVLDQTILRDMQAVEKQ 402


>gi|329570113|gb|EGG51855.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1467]
          Length = 392

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 62/335 (18%), Positives = 131/335 (39%), Gaps = 59/335 (17%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q W +     R L++  + +Y+    Q  I   +  +EK     +  LS  E++ F+   
Sbjct: 66  QKWFEYY---RSLNEQKIATYDKREEQVKILNRWIGDEK-----LNSLSSEELQKFLFIL 117

Query: 79  RTQK-------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP----- 126
           + +            SL+  +  +    KY  K+ +T E+ +  ++  K   ++      
Sbjct: 118 KEKGINGVDVGYAKNSLQSLVQVLNMIFKYCMKKNLTNENPMKFVKMPKYQLTVKDLKES 177

Query: 127 ------RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                 + L   +  T ++  ++       + +   S + ++L+  G R+SEAL+L PQ+
Sbjct: 178 VNCLEDKFLTVDELRTFLNYGII-------YEELPMSVLFHVLFYTGCRVSEALALQPQD 230

Query: 181 IMDDQSTL---------------RIQGKG--DKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
           I  +++ +               RI+        R VP+ P V + + E  D+       
Sbjct: 231 IDFERNEILFYKQTAVKGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRN 290

Query: 224 N----IQLPLF----RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
           +     +  LF     G  G P        ++++     G+  +   H  RH+ A+ L++
Sbjct: 291 SNFVVDEAYLFVYLDPGKCGVPYRREYVNDHVKRCVDRCGINKNFHTHLARHTMAS-LVA 349

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                  ++  LGH   +T++IY ++ S      +
Sbjct: 350 EYCSWDVLKDRLGHTDSTTSKIYRHLTSNERIKPL 384


>gi|288922739|ref|ZP_06416910.1| integrase family protein [Frankia sp. EUN1f]
 gi|288345916|gb|EFC80274.1| integrase family protein [Frankia sp. EUN1f]
          Length = 409

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 54/321 (16%), Positives = 105/321 (32%), Gaps = 48/321 (14%)

Query: 23  QNLEIER-GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR--- 78
           + L   R  ++K T   Y      +++ +       I    ++ L+   +          
Sbjct: 71  EWLAAVRPAVAKGTWAKYRNYLTLYVVPV-------IGPTPLQDLTARRLDLLYGHLLDK 123

Query: 79  --------RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
                   + Q +   ++      +   L    K      +   +    +     P    
Sbjct: 124 GRLRQRGGQGQGLAPATVAVVHQTLSRALGDAVKWGYLRRNPAEDAHRPRVGRRAPTVWT 183

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-- 188
            +Q    +D++           D R  A+  LL   G+R      L   ++  + +T+  
Sbjct: 184 PEQVRAFLDHIR----------DDRLYAMYLLLVTTGVRRGTLAGLRRADVDLELATVSP 233

Query: 189 ---RI----------QGKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGI 233
              R+          Q   +  R + L P  R A+  Y            +    LF   
Sbjct: 234 ITTRVVIDGKADDGEQKTVNAYRPLSLDPLTRDALRAYVAVWEENRRTFGHTTDRLFCWP 293

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            G  ++P     + +   R +GLP+    H +RHS+AT  L +G   + +   LGH  ++
Sbjct: 294 DGTAIHPDTITDWFQGHARAVGLPV-IRLHDVRHSYATAALKSGVHPKVVSERLGHASVA 352

Query: 294 -TTQIYTNVNSKNGGDWMMEI 313
            T   Y++V      D   +I
Sbjct: 353 FTLSFYSHVIPGMDKDAADQI 373


>gi|330997948|ref|ZP_08321782.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329569552|gb|EGG51322.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 431

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 64/295 (21%), Positives = 110/295 (37%), Gaps = 29/295 (9%)

Query: 27  IERG-LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIG 84
           +E+G  +K T   Y      F  FL  + ++K T    ++L+   I  F    R  + + 
Sbjct: 126 VEKGQRAKSTYNKYLAVYNHFKTFL--WEKKKRTDMAYKELTKEIITDFDKYLRVEKGLS 183

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +L      + S      +R I          +L+   +    L E++  TL + V + 
Sbjct: 184 ANTLWIYTMPLLSLTDKAWRRGIVRTDPFGEY-SLEMQETDRGYLTEEELRTLANAVFV- 241

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ-----NIMDDQSTLRIQGKGDKIRI 199
                K        +       GL   +  +LT       +   ++  +  + K      
Sbjct: 242 -----KKQTNLVRDMFLFGCFTGLSYIDIKTLTHDKIQRMDFDGEEWIITRRTKTRVSSN 296

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPL+   ++ I  Y  L   DL   I             +  V   +++Q+ +  G+   
Sbjct: 297 VPLMEIAKELIERYRGLAGGDLVFPIP------------SNSVCNTHLKQIAKACGIHKE 344

Query: 260 TTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              H  RH+FAT   L NGG + ++  ILGH  +STTQIY  V ++        I
Sbjct: 345 IGFHLSRHTFATTVYLCNGGTIEALSKILGHKHISTTQIYAEVTNRMVSSDFRAI 399


>gi|303235615|ref|ZP_07322222.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302484062|gb|EFL47050.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 451

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 68/319 (21%), Positives = 132/319 (41%), Gaps = 31/319 (9%)

Query: 14  LLKERQNWL----QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLS 67
           LL+    +L    + + I+R L    L++Y+      L  L  Y ++K  +  I   QL 
Sbjct: 155 LLESFGEYLTQTKERIGIDRALKTFKLRTYQ------LSLLREYVQKKHKVSDIPLSQLD 208

Query: 68  YTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
              I  F       +K+   S+  +LS +++ ++   K+ +      L   + ++    P
Sbjct: 209 KAFIEGFEYYLTIDRKLKRSSISSTLSTLQTIVRIAVKKGVLDFYPFLGY-SYERPKGEP 267

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R++ +++   ++D   L    E   I      +       GL IS+  +L  +NI+ ++ 
Sbjct: 268 RSITKEELEHIID---LEIEWENYRIV---RDLFVFSCFTGLAISDVRNLREENIVTEEG 321

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            L I+G+  K +    +  +  A+                +P             +    
Sbjct: 322 KLCIKGRRMKTKTPYRVQVLPPALTIMNRYRGIRAGFVFDVP----------TTDIVLNG 371

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +  ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQ+Y  V+S+ 
Sbjct: 372 MHYIQRNIGMETPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSER 431

Query: 306 GGDWMMEIYDQTHPSITQK 324
               M EI  +   + T K
Sbjct: 432 IHRDMQEIQQRIQDTFTLK 450


>gi|229199836|ref|ZP_04326430.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus m1293]
 gi|228583643|gb|EEK41867.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus m1293]
          Length = 319

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 115/298 (38%), Gaps = 19/298 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           VS E     +++L   + + G +  TLQ Y  D R  L  L  + E K     + +L+  
Sbjct: 14  VSQENKNLVKDFLIEKKAQ-GKAASTLQQYHWDLRIILFLLHQHFENK----NLIELTRK 68

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRN-LKKSNSLP 126
           +IR      +   + +  +   +S ++S L++           +    +R   K      
Sbjct: 69  DIRNLSIIFQELGMSNARVNGLMSALRSALEFCADDDDYDYEFNVGSRVRGLPKNPVREI 128

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             + E+Q   L+D +L              +  L L Y    R +E   +  + + +   
Sbjct: 129 TFITEEQIEWLIDELLEQEK-------YMLATYLALSYYSAARKNEVYQVQKEELTERYF 181

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           T  ++GK  K   +   P V+K I  Y +    D+  ++ + +++    K LN  VF  +
Sbjct: 182 TNVVRGKRGKKFRLYYNPRVQKCIRLYIEQRGKDVIPDLFVRVYKNGERKLLNKSVFNYW 241

Query: 247 IR----QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            +     L    G       H  RHS   +L   G  L  ++S+  H  +STTQ Y  
Sbjct: 242 CKIFSKMLYEKEGKEYKMNPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSYLK 299


>gi|295100102|emb|CBK89191.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87]
          Length = 397

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 53/300 (17%), Positives = 103/300 (34%), Gaps = 38/300 (12%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           +Q    +    E+K+  ++I  +  ++ + +  + + +     ++      +K+      
Sbjct: 104 KQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMKDKGFSYNTINNHKRSLKASFYIAI 163

Query: 104 KRKITTESNI--LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
           +     ++         L+       AL E+Q L L+  +      +T  +  +    + 
Sbjct: 164 QDDCVRKNPFDFKLSEVLENDTKEKVALTEEQELALLSFI------KTDNVYHKYYDDVL 217

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPS 205
           +L   GLRISE   LT  ++      + I                       R VPL   
Sbjct: 218 ILLKTGLRISELCGLTIMDVDFIHEVVVIDHQLLKSKEQGYYIETPKTKSGTRQVPLSKE 277

Query: 206 VRKAILEYYDLCPFDLNL---NIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYL 254
             +A        P             LF   +GKP        L   + ++Y +  +   
Sbjct: 278 TIQAFQRVMKKRPKAEPFVIDGRGNFLFVNQKGKPKVAIDYNMLFVRMVKKYNKHHKD-- 335

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
                 T HTLRH+F T L S   + + +Q I+GH  +S T   Y + +       +  +
Sbjct: 336 NPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQRL 395


>gi|254303771|ref|ZP_04971129.1| possible integrase [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148323963|gb|EDK89213.1| possible integrase [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 353

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 95/265 (35%), Gaps = 38/265 (14%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           I  ++  +I  F +    +K    S++   + +K    +  + K  T +    +  LK  
Sbjct: 100 ISDITPIQISNFQNDLL-RKYKGSSIRTINAYVKMLFTWCVRYKNLTSNPFDMVDRLKLE 158

Query: 123 -NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
                  +   +   +V+ V           +     +  LL+  GLRI EA +L   +I
Sbjct: 159 TKKRMDIITVDEFNQIVEQV----------NNPDMKLMFKLLFWTGLRIGEARALKIDDI 208

Query: 182 MDDQSTLRIQG---------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
             +  T+ +                     IR++ +   +   I +Y D   + L+ N  
Sbjct: 209 DFNNKTISVTKSYTNLSGKSIITTPKTKGSIRVIKIDDVLLSEIKDYIDKAKYILDDNF- 267

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
                       N   ++   +     + L      H LRHS A+ L++NG D+  I   
Sbjct: 268 --------IFRFNKASYRYNFKNATIKV-LGRDLRVHDLRHSHASFLINNGVDILLISKR 318

Query: 287 LGHFRLSTT-QIYTNVNSKNGGDWM 310
           LGH   + T  +Y+++      + +
Sbjct: 319 LGHSNTAMTLNVYSHLYPDRENEAI 343


>gi|332826739|gb|EGJ99556.1| hypothetical protein HMPREF9455_04052 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 406

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 53/294 (18%), Positives = 109/294 (37%), Gaps = 22/294 (7%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           +  S  T++ ++        FL     +E I ++ I ++   +   F+  +  + +   S
Sbjct: 129 KDFSVSTVEKFDTSLNMLKAFLKHSMKKEDILLKEINRVFIQDFEFFL--KADRNMQHNS 186

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             + L  +K  ++     +   +   + ++  K        L++ +   + + V      
Sbjct: 187 ALKHLKNLKKIVRIALANEWIKKDPFVGIQ-FKHDKIDVDFLSQDELERIKNKVFTIRRL 245

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRIVPLLPSV 206
           E          I       GL   +   L   +++ D    L I+    K   +  +P +
Sbjct: 246 EVV------RDIFLFCTYTGLAFIDVKQLDSSHLIADGNGALWIRKPRQKTDNMCNIPVI 299

Query: 207 --RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
              KAILE Y   P  +  N+ LP+        L+      Y++++    G+    ++H 
Sbjct: 300 QPAKAILEKYKEHPECIKKNVLLPV--------LSNQKTNAYLKEIADLCGITKKMSSHV 351

Query: 265 LRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            RH+ AT   L+N   + ++  ILGH     TQ Y  V   +    M  +  + 
Sbjct: 352 ARHTAATTVFLANNVSIENVAKILGHSSTKMTQHYAKVLDSSILRDMQSVEAKF 405


>gi|320107593|ref|YP_004183183.1| integrase family protein [Terriglobus saanensis SP1PR4]
 gi|319926114|gb|ADV83189.1| integrase family protein [Terriglobus saanensis SP1PR4]
          Length = 419

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/308 (16%), Positives = 106/308 (34%), Gaps = 51/308 (16%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
               N+L+ ++++R   K T  +Y       L   A Y  +          +  +   F+
Sbjct: 119 DAIDNYLKYVKMQRK--KRTFLTYRYTLDVLLR--ASYKRKYA-----EDATRQDAIDFM 169

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE-SNILNMRNLKKSNSLPRALNEKQA 134
           +    Q +G R++   +  +    K   + K+  +      +  +       R + E + 
Sbjct: 170 TYCYEQGLGARTVYDKVVTVLQLFKRHGREKLLEKGDWPSYVDTI-------RPIYEPEE 222

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           LT +    + T  E          +L  + G G R  E   +   ++  +   +R+  K 
Sbjct: 223 LTAM--FKVATEDEAD--------MLKFILGSGFRDQEIRYVEYLDLDSNHDLVRVTAKK 272

Query: 195 DKIRIVPLLPS----VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +              +   ++E         N      +F   R  P +       ++++
Sbjct: 273 EWDFTPKNWEERVVPLPHVLVERLKKRKERKNARPHDLIFGNTRSNPDSE--MDMVVKRV 330

Query: 251 RRYLGLPLSTT------------------AHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
               GL                        H  RH+FAT+ L +G D+R++QS LGH  +
Sbjct: 331 AERAGLNCGRCVTEHGNKCEEGPYCMNFFLHKFRHTFATNHLRDGVDIRTVQSWLGHRDI 390

Query: 293 STTQIYTN 300
           ++T +Y  
Sbjct: 391 NSTMVYLK 398


>gi|313158952|gb|EFR58330.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 389

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 56/286 (19%), Positives = 106/286 (37%), Gaps = 21/286 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ +  +R  S     +Y     +   FL +  E  +     ++L    +  F+    T
Sbjct: 120 FLKRVGKDRAYSSY--DNYRKRRNRLASFLEY--EYHVKDIAFKELKREFVEKFVVYLST 175

Query: 81  -QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + +   ++  +L  +K       K              +K   +  R L+  +   ++D
Sbjct: 176 VKGLASGTIHSTLKKLKLMTYTAYKNGWIAADPFAGF-YVKAEYAERRYLSASELQAVMD 234

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIR 198
             L +      +    N          GL  ++ + LT  +I  DD     I  K  K  
Sbjct: 235 VRLPN------YRTGINRDAFVFCAFTGLSHADVVKLTHADIHTDDNGERWIIDKRQKTG 288

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
               +  +  A + Y              PL    +   ++       +R + R+ GL  
Sbjct: 289 TQFRVKLLPAAEMLYKRYKDTYRTSEKVFPLKGTYKTLNMS-------LRHVARHAGLSF 341

Query: 259 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           + T H  RH+FAT + L+ G  L ++  +LGH R++TTQIY  + +
Sbjct: 342 NPTIHMARHTFATTVTLTQGVPLETVCKMLGHKRITTTQIYAKITN 387


>gi|270293715|ref|ZP_06199917.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
 gi|270275182|gb|EFA21042.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
          Length = 345

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 116/301 (38%), Gaps = 23/301 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISK 77
           +++   + I+R  ++ T + YE   +Q   FL   Y  E I +  +       +  F   
Sbjct: 58  EDFKGRIGIDR--AQSTYKQYEVLYKQLKQFLREEYHVEDIPLTELDLPFIEALNFFF-- 113

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R  +K+  R++K  +  +   ++    R+I T          K      ++L   +   L
Sbjct: 114 RVKRKMKPRTVKARIVLLNKVIRLALHRRIITRPPFDGFELEKTELKN-KSLTNDELDLL 172

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDK 196
           +   L   +            +       GL  ++   L+ ++I+ +D  +L I      
Sbjct: 173 MKTPLKSGTQR------FIRDMFLFSTFTGLAYADVHKLSWKDIITEDDGSLWI----SA 222

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R         K +     +  +   L     +F       ++ G     ++++ R  G+
Sbjct: 223 NRQKSHTEFNVKLLNIPIRIMEYYKGLAPDGKVFP-----HMSLGQVNVGLKRIARNCGI 277

Query: 257 PLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
               + H  R++FA+   LS G  + S+  +LGH  + TTQ Y  +N++  G+ M ++  
Sbjct: 278 NRKLSYHMARYTFASQICLSQGVPIESVSRMLGHKHIETTQRYARLNNEKIGNDMQQLSA 337

Query: 316 Q 316
           +
Sbjct: 338 R 338


>gi|253570203|ref|ZP_04847612.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840584|gb|EES68666.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 408

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 100/276 (36%), Gaps = 22/276 (7%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           +    +L    ++ I  + I +      +AF+   R +        R L  +   L    
Sbjct: 139 KYLTDYLVSLGKKDIAFEEITEDFGRNYKAFLI--RNKNFSTSQTNRCLCWLNRLLYLAV 196

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
             +I   + + N+   KK+    + +  ++   ++   L     E         A +   
Sbjct: 197 DNEILRTNPVENVEYEKKTAPKHKYVTREEMKRILAMPLNEGRAELGR-----RAFI-FS 250

Query: 164 YGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           Y  GL  ++   L P +I    + +  +RI  K   +     L  + + IL  Y+     
Sbjct: 251 YFTGLAYADIKQLHPCHIGTTAEGRRFIRINRKKTGVEAFIPLHPIAEQILSLYNT---- 306

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
              +I  P+F        +       IR++   LG     + H  RH F   L+S    +
Sbjct: 307 --TDIHSPVFPLP-----SRDSIWHEIREIGVILGRHDDLSYHQARHGFGVLLISESVSI 359

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            SI  ++GH  +STTQ Y  +  +     M  + ++
Sbjct: 360 ESIAKMMGHSNISTTQGYARITEEKISREMDRLMEK 395


>gi|212692864|ref|ZP_03300992.1| hypothetical protein BACDOR_02364 [Bacteroides dorei DSM 17855]
 gi|212664653|gb|EEB25225.1| hypothetical protein BACDOR_02364 [Bacteroides dorei DSM 17855]
          Length = 407

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/301 (17%), Positives = 113/301 (37%), Gaps = 27/301 (8%)

Query: 20  NWLQNLE-IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           N+L   +      +K  ++  +    +F  FL               ++   +  F++  
Sbjct: 122 NFLDYFQAYINSYTKKDIRMVQIALSRFKDFLKEQYPMNEFSIKPELITKEMMEQFVAYL 181

Query: 79  RTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQAL 135
           +++ +G   +S+ +     K  ++Y     +  +    ++     S  L +  L+ ++  
Sbjct: 182 QSRSVGEGAKSIYQRF---KKVIRYAIDHDVMLKDPCKSVTCKVDSQMLRKDVLSPEEIQ 238

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--GK 193
            L         H          A ++ LY  GLR  +   LT +N+      L+ +    
Sbjct: 239 KL------AACHYDNENPNVRRAFIFCLYS-GLRFCDVKDLTYKNVDYANRLLKFEQSKT 291

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
                   ++  +   +L      P D N L   LP +              + +++  +
Sbjct: 292 KGHSASSGVVIPLNDGLLSIIGEAPADKNCLIFDLPTYESCC----------KSVKRWVK 341

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+    + H  RHSFA ++L+NG +++++ S+LGH  L  T+ YT    K   + +  
Sbjct: 342 RAGIDKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLKEEAINS 401

Query: 313 I 313
           +
Sbjct: 402 L 402


>gi|60680742|ref|YP_210886.1| putative transposase [Bacteroides fragilis NCTC 9343]
 gi|60492176|emb|CAH06939.1| putative transposase [Bacteroides fragilis NCTC 9343]
          Length = 412

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 50/295 (16%), Positives = 106/295 (35%), Gaps = 34/295 (11%)

Query: 34  LTLQSYE------CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
            T+ +Y           +F+   + Y    I+I+ I  +  T+   ++  R T K G  +
Sbjct: 128 KTIATYRKYEVTRRHLAEFIQ--SKYNLSDISIKEITPMFITDFELYL--RTTCKCGFNT 183

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             + +   K  +   +   I       N + ++        L E +   ++   ++    
Sbjct: 184 TAKFMQFFKRIILIARNNGILIGDPFANYK-IRLEKVDRGYLTEDEIKIILKKKMVS--- 239

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKGDKIRIVPLL 203
             +    R+  I       GL   +  +L   N       +   +  + K +    VPLL
Sbjct: 240 -ERLEQVRDVFIFSCF--SGLAYVDVANLKEDNIRKSFDGNLWIITKRQKTNIDVNVPLL 296

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              +  + +Y            +  L  G     ++      Y++++    G+  + T H
Sbjct: 297 DIPKMILEKY------------KGKLPNGKVLPIISNQKLNAYLKEIADVCGIKKNLTFH 344

Query: 264 TLRHSF-ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
             RH+F  T  L+ G  + ++  +LGH  + TTQIY  + +    + M  +  + 
Sbjct: 345 LARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNNKISNDMQGLDKKF 399


>gi|188532702|ref|YP_001906499.1| Bacteriophage 186 integrase [Erwinia tasmaniensis Et1/99]
 gi|188027744|emb|CAO95599.1| Bacteriophage 186 integrase [Erwinia tasmaniensis Et1/99]
          Length = 342

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 65/321 (20%), Positives = 117/321 (36%), Gaps = 46/321 (14%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDT--------RQFLIFLAFYTEEKIT 59
           E ++FE    +  W +  E  R L +L    Y            RQ  +  AF    +  
Sbjct: 35  EALAFEQFTVQNPWQEEREDRRTLKELVDAWYSAHGITLKDGIRRQQAMHHAFGCMGEPL 94

Query: 60  IQTIRQLSYTEIRA------FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESN 112
            +      ++  R       +    R +++  R+L   L+  ++    L +      E+ 
Sbjct: 95  ARDFDAQMFSRYRERRLKGEYARSNRVKEVSPRTLNLELAYFRAVFNELNRLGEWKGENP 154

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           + NMR  + +      L   Q   L+D    H   + +        ++ +    G R SE
Sbjct: 155 LKNMRPFRTAEMEMAWLTHDQIALLLDECKRHDHPDLE-------TVVRICLATGARWSE 207

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
           A SL   ++   + T     KG K R VP+   + +++ +           + +  LF  
Sbjct: 208 AESLKKSHLAKYKITYT-NTKGRKNRTVPISKELYESLPD-----------DKKGRLFSD 255

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             G            R      G+  P     H LRH+FA+H + NGG++  +Q +LGH 
Sbjct: 256 CYG----------AFRSALERTGIELPAGQLTHVLRHTFASHFMMNGGNILVLQRVLGHT 305

Query: 291 RLSTTQIYTNVNSKNGGDWMM 311
            +  T  Y +    +  D + 
Sbjct: 306 DIKMTMRYAHFAPDHLEDAVR 326


>gi|307307476|ref|ZP_07587210.1| integrase family protein [Shewanella baltica BA175]
 gi|306910151|gb|EFN40585.1| integrase family protein [Shewanella baltica BA175]
          Length = 451

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 108/275 (39%), Gaps = 21/275 (7%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           R  L  L            +  +++  ++A+  +    + G     R+L  ++S  K   
Sbjct: 117 RSVLPALNRRLLAHFGRYPLHMINHRMVQAWFDEISKTRKGAA--NRNLDTLQSVFKLAL 174

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           ++     +  + +R  K+   L R L+  +   L   +    +         +  IL LL
Sbjct: 175 RQGHCLTNPCIGIRQNKR-RVLNRFLSVAEMQRLSVALDECETVGGSIAQCAD--ILRLL 231

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
              G R+SE   L  + +  ++  L +       +++ +  +    +  Y+     +L  
Sbjct: 232 LLTGCRLSEITFLKGEYVRGNE--LHLPDSKTGAKVLYIGQAAVDILSRYHCKANTELFP 289

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             Q            +  + Q    +LR+ +G+      H LRH+FA++ + +G  +  +
Sbjct: 290 MKQGA----------STSLVQSLWLRLRKQIGIE-DVRLHDLRHTFASYAVMDGCSIPMV 338

Query: 284 QSILGHFRLSTTQIYTNV---NSKNGGDWMMEIYD 315
            S+LGH +++ T  YT+V   + +   + +  ++ 
Sbjct: 339 ASLLGHKKVTMTLRYTHVGDDSVEQAAEIIGAVFK 373


>gi|150395893|ref|YP_001326360.1| phage integrase family protein [Sinorhizobium medicae WSM419]
 gi|150027408|gb|ABR59525.1| phage integrase family protein [Sinorhizobium medicae WSM419]
          Length = 343

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 85/249 (34%), Gaps = 27/249 (10%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           +     S   +   +   R +   + ++ R ++ +   L+   K            +  K
Sbjct: 109 KRFSTFSQEMLDGIVGALRKRGNSNATINRKMAALGKLLRKAYKMGDIHNLPEFKRQKEK 168

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                 R L   +   L   +   +             +   L   G R+ EA+ L   +
Sbjct: 169 AGRL--RFLEADEEEVLFREIASRSELYLY--------LSIFLVDTGARLGEAIDLKWND 218

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I + ++T  +  K  + R VPL    + A+ +  D  P   +               ++ 
Sbjct: 219 IHEGRATFWV-TKSGRSRTVPLTLRAKDALKKVADRSPGPFS--------------RIDQ 263

Query: 241 GVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             F+      +   GL        H LRH+ A+ L+  G DLR +Q  LGH  L  T  Y
Sbjct: 264 QKFRAIWNAAKVDAGLGDEEDIVPHILRHTCASRLVRGGIDLRRVQMWLGHQTLEMTMRY 323

Query: 299 TNVNSKNGG 307
            ++ S +  
Sbjct: 324 AHLASHDLD 332


>gi|319788866|ref|YP_004090181.1| integrase family protein [Ruminococcus albus 7]
 gi|315450733|gb|ADU24295.1| integrase family protein [Ruminococcus albus 7]
          Length = 361

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 54/291 (18%), Positives = 106/291 (36%), Gaps = 33/291 (11%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T  +Y     +       +   +   +    +    I  FI K+ +Q +  R +   ++ 
Sbjct: 82  TASNYRMKIER-------HILPEFGAKVCASIKTRMISEFIQKKLSQGLSARYVGDIITV 134

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +K+  +Y         + I  +   KK+      +  ++   LV    ++T+H    +  
Sbjct: 135 MKAMYRYAANE-YNITNVIEGVVMPKKAKPEINIMTAEEKRKLV--YYINTNHNETTLA- 190

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE-- 212
                + L    G+RI E  +L+ Q+I  ++  L ++    +I+        +  I E  
Sbjct: 191 -----VALSLFTGMRIGEVCALSWQDIDIEKRVLYVRHTIQRIQNYDGKSKTKIIITEPK 245

Query: 213 ------------YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
                              +L       +  G  G P+ P   Q   + +   LGL  S 
Sbjct: 246 SQSSKREIPIPECLVPMLTELKRKPDSYVLTGT-GTPIEPRTLQYRFKSILNRLGLG-SF 303

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           T H+LRH  A+  +  G D++++  ILGH     T   Y + +  +    M
Sbjct: 304 TYHSLRHKMASEAIEIGFDVKTLSEILGHSSSQITLDRYVHSSMSHKKSCM 354


>gi|227523734|ref|ZP_03953783.1| integrase [Lactobacillus hilgardii ATCC 8290]
 gi|227089049|gb|EEI24361.1| integrase [Lactobacillus hilgardii ATCC 8290]
          Length = 305

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 67/304 (22%), Positives = 127/304 (41%), Gaps = 33/304 (10%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L +  Q+W+ NL  +  + ++T + YE   RQ +          + +  + +L+Y ++ 
Sbjct: 6   KLHRYFQDWM-NLYKKDAVREVTYRKYEMTYRQIVS-----LAPDLRMCELSRLTYQKLL 59

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN--MRNLKKSNSLPRALN 130
              +K   ++    ++      IKS L    +  I          ++  K      + LN
Sbjct: 60  NDYAKTHERQ----TVMDFHRHIKSSLIDALEEGILERDPTRKAIIKGKKPGPHKTKFLN 115

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           + +   ++D++ L            +  IL L+   GLR SEAL++TP +    + TL I
Sbjct: 116 QHEVQLMLDSLSLDAGVN------WDYFIL-LITKTGLRFSEALAITPNDFDFARQTLNI 168

Query: 191 QGKGDKIRIV------PLLPSVRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPG 241
               D               S+RK  L++  +  F      L+   P+F   +       
Sbjct: 169 NKTWDYKSRQAGFAPTKNFSSMRKIQLDWQTVIQFSQLTKELSEDKPIFVRSKVY---ND 225

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI-YTN 300
               Y+ +L +  G+P+  + H LRH+ A+ LL  G  + S+   LGH  ++TTQ  Y +
Sbjct: 226 TINHYLERLCKKSGIPI-ISVHGLRHTHASLLLYAGVSIASVARRLGHSNMNTTQQTYLH 284

Query: 301 VNSK 304
           +  +
Sbjct: 285 IIQE 288


>gi|293370975|ref|ZP_06617517.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292633905|gb|EFF52452.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 409

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 98/292 (33%), Gaps = 28/292 (9%)

Query: 34  LTLQSYE------CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
            T+ +Y           +F+   + Y    I+I+ I  +  T+   ++  R   K G  +
Sbjct: 126 KTIATYRKYEVTRRHLAEFIR--SKYNVSDISIKEISPMFITDFELYL--RTACKCGYNT 181

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             + +   K  +   +   I       + + ++        L E +   ++   ++    
Sbjct: 182 TAKFMQFFKRIIIIARNNGILVGDPFASYK-IRLEKVDRGYLTEDEIKIILKKKMVSERL 240

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQGKGDKIRIVPLLPSV 206
           E          +       GL   +   LT  N        L I  K  K      +P +
Sbjct: 241 E------HVRDLFVFACFTGLAYIDVAGLTQDNICKSFDGNLWIMTKRQKTNTDVNVP-L 293

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
                         L     LP+        ++      Y++++    G+  + T H  R
Sbjct: 294 LDIPKMILKKYKGKLPNGKILPV--------ISNQKLNAYLKEIADVCGIKKNLTFHLAR 345

Query: 267 HSF-ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           H+F  T  LS G  + ++  +LGH  + TTQIY  + +   G  M  +  + 
Sbjct: 346 HTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSKIGSDMQGLDKKF 397


>gi|291009717|ref|ZP_06567690.1| phage integrase family site specific recombinase [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 237

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 86/219 (39%), Gaps = 7/219 (3%)

Query: 81  QKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           +     +       ++ F K+  +  +    S +  ++       L   + ++    ++D
Sbjct: 3   ETRSASTALNKHKVLQQFFKWLAEDEQEIDRSPMERVKAPTTPTKLVPVMGDEDTKKILD 62

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                T +   + D R+ AI+ L YG G R++E  +LT  ++     ++  QGKG K R 
Sbjct: 63  -----TCNGKTFTDLRDQAIIRLYYGTGARLAEVANLTTDDLDMATDSVVYQGKGGKSRR 117

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           V   P   +A+  Y          ++          +PL     +  +++  ++ G+   
Sbjct: 118 VRFGPKTARALSRYLRARSRHRAADVPSLWLAARGAQPLQANGIKIMLKRRGKHAGVS-G 176

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             AH  RH++A      GGD   +  +LG    +  + Y
Sbjct: 177 VHAHRWRHNYAHAWKLAGGDTGDLMLLLGWSTDAMARHY 215


>gi|301309511|ref|ZP_07215453.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3]
 gi|300832600|gb|EFK63228.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3]
          Length = 418

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 56/316 (17%), Positives = 100/316 (31%), Gaps = 39/316 (12%)

Query: 11  SFELLKERQNWLQNLEIERGL-----SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           + +L + R N+++  +  + L     S   + +++    + L   A     K       Q
Sbjct: 121 AEQLERSRCNFIEYFDHVQRLRHAHSSDSIIINWKR-VHELLKIFA-----KGDTILFSQ 174

Query: 66  LSYTEIRAFISKRRTQK--------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           +    I +F                I   +     S  K+ LK        T      ++
Sbjct: 175 IDLKLIESFRMFLLNAPQGGGKKGVISQNTASTYFSIFKAALKQAFIDGYLTVDIGAKVK 234

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
            ++   S    L   +   L               D             GLR  +   L 
Sbjct: 235 GIQGQESRREYLTIDELNRLAQ----------TPCDPLLKRAALFSALTGLRHCDIQKLK 284

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
              I     + R+     K + V  +P   +A     +    +  +   LP         
Sbjct: 285 WSEIEVFNGSYRLNFTQQKTKGVEYMPISEQAFQLCGERKDGEQLVFAGLP--------- 335

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
            +P    R I++     G+    T H  RHS+AT  L+ G D+ ++  +LGH  + TTQ+
Sbjct: 336 -DPSWINRPIKKWVVEAGITKHITYHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQV 394

Query: 298 YTNVNSKNGGDWMMEI 313
           Y  V      +    I
Sbjct: 395 YAKVVDAKKEEATKTI 410


>gi|261883696|ref|ZP_06007735.1| phage integrase family site specific recombinase [Campylobacter
           fetus subsp. venerealis str. Azul-94]
          Length = 171

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/145 (33%), Positives = 73/145 (50%), Gaps = 7/145 (4%)

Query: 166 CGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
            G+R+SEAL+L  ++I    D   LRI+GKG+K RIV +   +    L+   +      +
Sbjct: 19  TGIRVSEALNLKRKDISEDGDLYILRIRGKGNKYRIVMIKKHLIDEHLQNIAINY----I 74

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRS 282
           N +  LF    G+ L      R + Q+    G+      AH LRH+FAT L     DL  
Sbjct: 75  NSEGYLFVNRNGEKLTQAYVSRIVEQILFGAGIRKEKNGAHMLRHTFATMLYKKQKDLVL 134

Query: 283 IQSILGHFRLSTTQIYTNVNSKNGG 307
           +Q  LGH  L+T++IYT+ +S    
Sbjct: 135 VQEALGHASLNTSRIYTHFDSDKLK 159


>gi|261207287|ref|ZP_05921975.1| predicted protein [Enterococcus faecium TC 6]
 gi|289566174|ref|ZP_06446608.1| predicted protein [Enterococcus faecium D344SRF]
 gi|260078502|gb|EEW66205.1| predicted protein [Enterococcus faecium TC 6]
 gi|289162035|gb|EFD09901.1| predicted protein [Enterococcus faecium D344SRF]
          Length = 382

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 51/290 (17%), Positives = 104/290 (35%), Gaps = 41/290 (14%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
              L     Y   KITI   ++ +  +++ F+  R       R              Y  
Sbjct: 98  NHILPAFGAYKINKITIDIAQKFANEKVKKFVLYREFINNASR-----------ICDYAI 146

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET--KWIDARNSAILY 161
           K     ++ +  +   K+  S+    +E+  L       L    ++  K  D R  +   
Sbjct: 147 KLGYLQDNPLKKITVPKRKVSV----HEEDTLNFFSKEELEIFLKSVEKKKDIRMYSFFR 202

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------------GDKIRIVPLLPS 205
            L   G+R+ E L+LT ++I  + + ++I                    +  R +P+   
Sbjct: 203 TLAFTGMRVGELLALTWKDIDFNDNYIKINKTLARGKNRRLYVEQPKTKNSKRDIPVDDE 262

Query: 206 VRKAILEYYDLCPFDL------NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
               + ++       L       L+    +F   + + L     ++++  + +   L   
Sbjct: 263 TMNILKKWRLEQRKWLLTLGINTLSKNQLVFSNQKNEYLQLSKPRKWLEVIIKQNNL-KR 321

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGD 308
            T H LRH+ A+ LL  G +++ +Q  LGH  +  T  +Y ++  K    
Sbjct: 322 ITIHGLRHTHASLLLEAGANIKDVQERLGHSSIQITMDLYIHITDKRKEK 371


>gi|170757613|ref|YP_001781774.1| phage integrase family site specific recombinase [Clostridium
           botulinum B1 str. Okra]
 gi|169122825|gb|ACA46661.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum B1 str. Okra]
          Length = 354

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 55/314 (17%), Positives = 124/314 (39%), Gaps = 50/314 (15%)

Query: 24  NLEIER-GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
            +E E+   S  T++S      +F         E +  + + +++  +I+  + K   + 
Sbjct: 75  YVEHEKLYKSIKTIESLITVLHKF---------EDLNKKEMCKITTLDIQKIVDKVTKEG 125

Query: 83  IGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
           + + + +  L  + +  K  K+   I       N++  K   +  +AL + +   L++  
Sbjct: 126 LNNNTTRYYLKRLNTLFKSAKEEYNIIDSMPTKNIKVGKPVPTKKKALTDNEIKNLLE-- 183

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
                    + + +   + +L    G+R+ E L +T  N+    +T+ +  +  KI    
Sbjct: 184 --------DFKNNKYYLLNFLAVNTGMRLGELLGITWDNVDFKNNTITVNKQWKKIEKGV 235

Query: 202 L------------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
                           V   +++        +N+N ++  FR       +       +  
Sbjct: 236 WGFGDVKSKNSNRTIPVSNIVIKELMNHRNVININNRVLNFR-------STNSVCAIVNG 288

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             +  G   + T H LRH++AT L++NG D ++   ILGH    T + Y++VN+      
Sbjct: 289 KFKKHG--YTITFHELRHTYATRLIANGVDFKTAAQILGHSVEQTLKTYSHVNN------ 340

Query: 310 MMEIYDQTHPSITQ 323
             ++ ++ H  I +
Sbjct: 341 --DMLNKAHSVIEK 352


>gi|313147493|ref|ZP_07809686.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313136260|gb|EFR53620.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 345

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 59/286 (20%), Positives = 114/286 (39%), Gaps = 26/286 (9%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSLKRSL 92
            T+Q YE  TR    F+    E +++   +  L    I  F +  +  +     S    L
Sbjct: 71  KTVQRYETTTRYLEEFIK--KEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSSITRL 128

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +K  ++   +     +      R  K   + P  L   +   ++         E    
Sbjct: 129 KNLKKIIRIALENDWIKKDPFAYYR-FKLEETDPEFLTMDEIKIILAKEFTIKRVEQ--- 184

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQG---KGDKIRIVPLLPSVRK 208
             R+  I  +    GL  S+   L+P++++ D++  L I+    K   +  +P+LP    
Sbjct: 185 -VRDVFIFGVF--TGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAVS 241

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            + +Y ++      L   LP+        L+      Y++++    G+  + + HT RHS
Sbjct: 242 ILEKYKNVAECTGKL---LPV--------LSNQRMNSYLKEIADVCGIHKNLSTHTARHS 290

Query: 269 FAT-HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +AT   L+NG  + ++  +LGH   S T+ Y  V  +N    M ++
Sbjct: 291 YATSICLANGVSMENVAKMLGHADTSITKHYARVLDQNIFKDMQKV 336


>gi|292669749|ref|ZP_06603175.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292648546|gb|EFF66518.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 344

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 104/276 (37%), Gaps = 35/276 (12%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
              Q +  ++ ++++ F++          ++K +   + S +      ++   +    ++
Sbjct: 74  FGEQPLAAITRSQVQGFVNAMADHPYSMETIKATKCLLSSIMALAASDQLIPVNPCKAVK 133

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             K   +  RA + ++   L+     H      WI       + LL+  GLR+ E L+LT
Sbjct: 134 LPKVEPNKKRAPSMEEFKRLMKASEGH----RLWIA------IPLLFLAGLRLGEMLALT 183

Query: 178 PQNIMDDQSTLRIQGKGDKI------------------RIVPLLPSVRKAILEYYDLCPF 219
            ++I   +  + +                         R +P+   +   +  Y      
Sbjct: 184 WEDIDMKERLIHVSKTWSVENGSGKAYLKDSPKTKAGRRSIPIGDDLYTMLKRYRT---- 239

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQ-RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
           +      + + +    +  +P VF+ +  +       LP   T H+ RH FA HL + G 
Sbjct: 240 NEGKGKNVVIPKRDADEYTHPQVFRGKVFKYWCYDADLPKDITPHSGRHYFAYHLYAAGV 299

Query: 279 DLRSIQSILGHFRLST-TQIYTNVNSKNGGDWMMEI 313
           +  +++ I GH  ++T   +Y +   K   + M++ 
Sbjct: 300 NPETLRHITGHSDITTLLDVYCH-TDKLSDETMIQA 334


>gi|154000914|gb|ABS57025.1| integrase [uncultured bacterium]
 gi|154000916|gb|ABS57026.1| integrase [uncultured bacterium]
 gi|154000922|gb|ABS57029.1| integrase [uncultured bacterium]
 gi|154000936|gb|ABS57036.1| integrase [uncultured bacterium]
          Length = 158

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 50/94 (53%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 65  RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 124

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 125 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|153805890|ref|ZP_01958558.1| hypothetical protein BACCAC_00130 [Bacteroides caccae ATCC 43185]
 gi|149130567|gb|EDM21773.1| hypothetical protein BACCAC_00130 [Bacteroides caccae ATCC 43185]
          Length = 267

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 51/276 (18%), Positives = 110/276 (39%), Gaps = 28/276 (10%)

Query: 45  QFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIG--DRSLKRSLSGIKSFLKY 101
           +F  FL   Y   + +I+    ++   +  F++  +++ +G   +S+ +     K  ++Y
Sbjct: 8   RFKDFLKEQYPMNEFSIKP-ELITKEMMEQFVAYLQSRSVGEGAKSIYQRF---KKVIRY 63

Query: 102 LKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
                +  +    ++     S  L +  L+ ++   L         H          A +
Sbjct: 64  AIDHDVMLKDPSKSVTCKVDSQMLRKDVLSPEEIQKL------AACHYDNENPNVRRAFI 117

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--GKGDKIRIVPLLPSVRKAILEYYDLCP 218
           + LY CGL   +   LT +N+      L+ +            ++  +  ++L      P
Sbjct: 118 FCLY-CGLCFCDVKDLTYKNVDYANRLLKFEQSKTKGYSASSGVVIPLNDSLLSIIGEAP 176

Query: 219 FDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            D N L   LP +              + +++  +  G+    + H  RHSFA ++L+NG
Sbjct: 177 VDKNCLIFDLPTYESCC----------KSVKRWVKRAGIDKHISWHCARHSFAVNILNNG 226

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            +++++ S+LGH  L  T+ YT    K   + +  +
Sbjct: 227 ANIKTVASLLGHSGLKHTEKYTRAVDKLKEEAINSL 262


>gi|301059533|ref|ZP_07200445.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300446298|gb|EFK10151.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 340

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 53/297 (17%), Positives = 103/297 (34%), Gaps = 30/297 (10%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
            L E  S  L +    +L   + +R +   T++           F+     + I  + + 
Sbjct: 54  ELEEPPSDYLEETILKYLNYCK-KRKMRTNTIRQ--------KYFVLSNFVKSIGDKPVE 104

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            +  ++I A++  R        +  R L  I++   +   R+    +   ++  + +   
Sbjct: 105 LIRKSDIEAYLELRIDSGKS--TFNRDLRDIRAMFNWYYGREGIFHNPANDIEKIGEDVE 162

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ-NIMD 183
           L           +    L+ T  E  +        L  ++  GLR  EA+ L    ++  
Sbjct: 163 LRYVPPFSDIKAV---KLVATRDEVDF--------LETIFYAGLRRIEAIRLLWSRDVDF 211

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
              TL    +  K   +   P     IL       ++    +   +F        +    
Sbjct: 212 GSRTLISWTRKRKNGTLTPKPKAMTKILYMALKNRYERRNRLDDRVF------QFSVEYL 265

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              ++ L    G+      H LRH  A+ LLS    L ++Q  LGH R++TT  Y +
Sbjct: 266 NDMMKCLCEKAGVQ-HFGLHALRHLGASILLSENVPLPAVQEYLGHERITTTNTYAH 321


>gi|260889471|ref|ZP_05900734.1| tyrosine recombinase XerC [Leptotrichia hofstadii F0254]
 gi|260860882|gb|EEX75382.1| tyrosine recombinase XerC [Leptotrichia hofstadii F0254]
          Length = 91

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 4/93 (4%)

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
              +GK L     +R I       G+    T H  RHSFAT LL+NG D+R +Q +LGH 
Sbjct: 3   VNSKGKKLTTRSLRRLISAHAHEAGIQKEITPHVFRHSFATELLNNGVDIRYLQELLGHS 62

Query: 291 RLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            ++TTQ+YT+V+      ++ +IY  THP   +
Sbjct: 63  SIATTQVYTHVS----KAFLRDIYMNTHPLAKE 91


>gi|254438527|ref|ZP_05052021.1| Phage integrase, N-terminal SAM-like domain protein [Octadecabacter
           antarcticus 307]
 gi|198253973|gb|EDY78287.1| Phage integrase, N-terminal SAM-like domain protein [Octadecabacter
           antarcticus 307]
          Length = 188

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 72/192 (37%), Gaps = 11/192 (5%)

Query: 9   IVSFELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           I ++ L    Q +  + L  +   S  T+ SY    R  L + A  T    T   +  + 
Sbjct: 2   IATYPLPVYVQRFFTERLLTQMQASPNTIASYRDTFRLLLKYAASETRLPPTELHVAHID 61

Query: 68  YTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKY---LKKRKITTESNILNMRNLKKSN 123
              I  F+      +    RS    L+ I+SF KY    + + +     +L M + +   
Sbjct: 62  ADIIGQFLMFCEEERGNSARSRNTRLAAIRSFFKYVAGCEPQLLHHCQKVLAMPSKRHEK 121

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            +   L   +   L+         ++ W   R+  +L  +   GLR+SE + L   ++  
Sbjct: 122 RVVDFLTRDEMEALL-----KVPDQSTWFGRRDRVLLLTMLQTGLRVSELIGLRISDVEL 176

Query: 184 DQS-TLRIQGKG 194
                LR  GKG
Sbjct: 177 GTGPHLRCMGKG 188


>gi|255036128|ref|YP_003086749.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254948884|gb|ACT93584.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 415

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 60/291 (20%), Positives = 111/291 (38%), Gaps = 24/291 (8%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRS 87
           +  SK T   YE        F+ +  +       I QL +  I  +    ++Q      +
Sbjct: 127 KEFSKNTYIRYETSLLHSRAFIRWKYQ--CDDLEITQLDFDFIADYEFWLKSQRGCNHNT 184

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             + L+  K  +    KR        ++ +  K        L+E +  +++   +     
Sbjct: 185 TMKYLANFKKIVLSCVKRGWLPRDPFVSFKLGKHDVDR-EVLSEAELFSIMSKKM----- 238

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRI-QGKGDKIRIVPLL 203
            T  +D     I       GL  ++   L    ++   D    + + + K D    +PLL
Sbjct: 239 PTTRLDQV-RDIFVFCCYTGLSYADVYKLKRSEVILGVDKNRWITLKRQKTDTASRIPLL 297

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
            S  K + +Y D     +  +  LP+        L+      Y++++     +  + T H
Sbjct: 298 DSAAKILDKYKDHAQCAV-ADQLLPV--------LSNQKMNSYLKEIGDLCHIDRNITFH 348

Query: 264 TLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             RH+FAT + L+NG  + S+  +LGH  + TTQ Y  V  K  G+ M  +
Sbjct: 349 LARHTFATTVTLANGVAIESVSKVLGHKNIRTTQHYAKVIDKKVGEDMKAL 399


>gi|298346534|ref|YP_003719221.1| site specific recombinase XerD [Mobiluncus curtisii ATCC 43063]
 gi|298236595|gb|ADI67727.1| site specific recombinase XerD [Mobiluncus curtisii ATCC 43063]
          Length = 264

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 106/283 (37%), Gaps = 43/283 (15%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +LQ+L+   G +K T++ +     Q +  +A              +S   + A+++   
Sbjct: 12  AYLQHLKAA-GRAKGTIRIHRYYL-QVMRGIAPCPG---------LVSRERLEAWLA--- 57

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  + + +      F K+L +  I  +S    ++ +   + +P    E      + 
Sbjct: 58  EHDWKPETRRSAQGVAHQFFKFLVEDGILKDSPAEFLKPVHVPDGVPHPAPESAVRHALQ 117

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
           N    T+            ++     CGLR  E  +L       +   LR++GKG ++R+
Sbjct: 118 NAPKRTA-----------LMVRFAALCGLRACEICTLRGNAWDGE--LLRVKGKGGRVRV 164

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +PL  S     LE                LF G     L+     + +        LP  
Sbjct: 165 IPLQDSTLIYSLESCP-----------GWLFPGRIDGHLSAQYTAKLLGSA-----LPPG 208

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            T H+LRH F T       DL ++ +++GH +  TT+ Y  ++
Sbjct: 209 VTGHSLRHRFGTVAYRATHDLLAVGAVMGHVKTDTTKRYIKLD 251


>gi|308192144|emb|CBX25735.1| integrase IntI1 [Klebsiella sp. MB45]
          Length = 182

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 86/201 (42%), Gaps = 28/201 (13%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLP 204
             T+ ++ GKG K R + L  
Sbjct: 162 HGTIIVREGKGSKDRALMLPE 182


>gi|169826079|ref|YP_001696237.1| prophage Lp3 protein 1, integrase [Lysinibacillus sphaericus C3-41]
 gi|168990567|gb|ACA38107.1| prophage Lp3 protein 1, integrase [Lysinibacillus sphaericus C3-41]
          Length = 390

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 53/293 (18%), Positives = 109/293 (37%), Gaps = 36/293 (12%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
              L  +  Y  +KIT+     +    +  +  K +  ++      + L        +  
Sbjct: 103 NHILPAMREYKIDKITV----DVCQKHVDKWAEKLKKFRVVKAYAAKVL-------DFAI 151

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLV--DNVLLHTSHETKWIDARNSAILY 161
           KR     +   ++     ++     + E++A      + ++   +   +  + +  A+  
Sbjct: 152 KRGYMQTNPFTHVDMPIAASKKVTIIEEEEAENFYTREQLIQFLACLEQENNYKAYALFR 211

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQG---------------KGDKIRIVPLLPSV 206
           LL   G+R  EAL+LT  ++    + +RI                 K    R + +    
Sbjct: 212 LLAFSGMRKGEALALTWNDLNFTTNEMRINKALSRGKNNKLYVKSTKTGFARTIKMDDKT 271

Query: 207 RKAILEYYDLCPFD---LNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
              + E+      +   L  N   P   +F   R + L P   +++I  +++   L  + 
Sbjct: 272 MAILKEWKKKQKQEYLVLGFNTMQPKQLVFSNERNEFLQPTKTRKWILHVQKKYKLG-TI 330

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMME 312
           T H LRH+  + L   G  L+ +Q  LGH  + TT  IY +V  K   + + +
Sbjct: 331 TTHGLRHTHCSLLFEAGASLKEVQDRLGHSDVQTTMNIYAHVTKKAKEEAIQK 383


>gi|315223379|ref|ZP_07865237.1| integrase [Capnocytophaga ochracea F0287]
 gi|314946654|gb|EFS98644.1| integrase [Capnocytophaga ochracea F0287]
          Length = 411

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 54/313 (17%), Positives = 108/313 (34%), Gaps = 31/313 (9%)

Query: 9   IVSFELLKERQNWLQN--LEIERG-LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           ++   LLK  + + ++  L +E+G  S  TL  YE        F+ +      +  + ++
Sbjct: 108 VMEDSLLKVYEKFKEDFALMVEKGVRSYSTLNKYENVYTHLSEFIQYKYHR--SDISFKE 165

Query: 66  LSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L+   I  F    R  K +   ++   +  +   ++    + I   +   N  +  +   
Sbjct: 166 LTEDFINDFDFYLRVNKSLTHNTIWVYMMPLCKMVEIAIDKGIIYRNPFKNYISSMEEKD 225

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN---- 180
               L  ++  TL+       S E          +       G    +   L   +    
Sbjct: 226 R-GYLLREEVETLLQYHPKSASAELV------RDLFVFSCFTGFSYIDIKQLKKSHLQSF 278

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
              ++  ++ + K D    V LL    K I +Y               LF        + 
Sbjct: 279 FDGNKWLIKRRQKSDVPCNVRLLDIAEKIIEKY-------EGTTRTEALFPTP-----SN 326

Query: 241 GVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                 I+++ +   +      + H  RH+F T  L+ G  L S+  ++GH  + TTQIY
Sbjct: 327 ANCNLLIKKMMKDCNIIREKPISFHWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIY 386

Query: 299 TNVNSKNGGDWMM 311
             + ++     M 
Sbjct: 387 AKITNEKISKDME 399


>gi|302670138|ref|YP_003830098.1| phage integrase family protein [Butyrivibrio proteoclasticus B316]
 gi|302394611|gb|ADL33516.1| phage integrase family protein [Butyrivibrio proteoclasticus B316]
          Length = 409

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 54/301 (17%), Positives = 112/301 (37%), Gaps = 44/301 (14%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           R   IF  +  E  I   +I  +   +I++ +++  +      ++ +    +  F ++  
Sbjct: 107 RNMQIFHTYIEEMPIGRMSIDNIGSNDIQSLLNE-VSYSRSQSTVNKVHGLLNQFFEHYY 165

Query: 104 KRKITTESNILNMRNLKKSNSLP----------RALNEKQALTLVDNVLLHTSHETKWID 153
           KR  +  + +L +   +K               + L++++   L     L   ++     
Sbjct: 166 KRD-SNNNPMLLVDKPQKQIDYSVVDAGDIDNNKVLSDEEIELL--TKELTKPYQNGIGG 222

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNI------MDDQSTLRI----------------- 190
            +   +L  +    +RI EAL L   +I       + + T+RI                 
Sbjct: 223 YKCGYMLLFIMWSYVRIGEALGLKYGDIANLECADNTRCTMRISREYSQEMNYDTGKKEW 282

Query: 191 ----QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
                     IR VPL    +  + E+  L     N+     +F+   G P++     + 
Sbjct: 283 KLTTPKSKHAIRTVPLSSQAQACLKEHIKLWCN--NIEASSFVFQSENGNPISLQHLNKK 340

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKN 305
           ++Q     G+    + H LRH+  ++ + +G D+  I    GH  +STT  IY N+  + 
Sbjct: 341 LKQALVNAGITKDISLHGLRHTGISYYIRHGVDISLISRTAGHSDISTTMKIYYNIIEEQ 400

Query: 306 G 306
            
Sbjct: 401 K 401


>gi|302878684|ref|YP_003847248.1| integrase family protein [Gallionella capsiferriformans ES-2]
 gi|302581473|gb|ADL55484.1| integrase family protein [Gallionella capsiferriformans ES-2]
          Length = 217

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 72/184 (39%), Gaps = 12/184 (6%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             L E +   L+       + +      R++ ++ L Y  GLR+SE +SL    +   Q 
Sbjct: 42  EYLTEHEVDQLI-----SAAGKVGRHGHRDATLIMLTYRHGLRVSELVSLRWDQVDLRQG 96

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            + I   K     + P+     +A+           +  +   +F   R  PL     ++
Sbjct: 97  LMHINRLKQGNPSVHPIRGPELRAL------RRLQRDYPVLPYIFSSERKAPLTDDAIRK 150

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            + +      LP +   H LRH+    L   G D R+IQ  LGH  +  T  YT ++S  
Sbjct: 151 IVGRAGVEARLPFTVHPHMLRHACGYKLAQAGQDTRAIQHYLGHRNIQHTVRYTQLSSDR 210

Query: 306 GGDW 309
             ++
Sbjct: 211 FKNF 214


>gi|207722744|ref|YP_002253179.1| integrase/recombinase protein [Ralstonia solanacearum MolK2]
 gi|206587926|emb|CAQ18507.1| putative integrase/recombinase protein [Ralstonia solanacearum
           MolK2]
          Length = 671

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 71/357 (19%), Positives = 131/357 (36%), Gaps = 76/357 (21%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-LSYTEIRA----- 73
           +WL  L         T ++Y  +  +FL++  +   + ++  T    ++Y +  A     
Sbjct: 321 DWLHYLS-------NTQRAYRKEAERFLLWAIWVRRKPLSSMTTEDCVAYRDFLADVPDD 373

Query: 74  FISKRRTQ-----------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--- 119
           + + R  +           K+   S   +L+ +++  ++L  +   + +    +R     
Sbjct: 374 WCAPRARERWTPTWKPFEGKLSPDSQAYALTVLQNLYRFLNDKNYLSGNPWGGVRATDSG 433

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K    + R+L E Q   +V+ + L    E    + R    L LLY  GLR++E ++ T  
Sbjct: 434 KPQLDVGRSLTEDQWAFVVERLFLL---ERTSSNLRLQITLPLLYATGLRLAEVVAATTA 490

Query: 180 NIMD------------DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN--- 224
           ++              D   L + GKG ++R VP+   V +A+  Y     F  +     
Sbjct: 491 DLAWRSLVLPRSGERMDGWWLTVIGKGSRVREVPVPDEVVQALGTYLMSRGFPSDPRQAR 550

Query: 225 ----------------IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT------- 261
                                       PL  GV  R I++  +     L  T       
Sbjct: 551 EPVALLGHATDQAERAPWAKRNTASPAAPLTAGVLYRQIKRFFQACAAELEATDRQGAVR 610

Query: 262 -----AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
                 H +RHS A+H ++ G  +  +Q  LGH  L TT +Y    +      M E+
Sbjct: 611 LNEASTHWMRHSHASHAIAAGTPVEIMQQNLGHRSLDTTTVYV---TSEEAIRMKEL 664


>gi|198243118|ref|YP_002216741.1| phage integrase [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|197937634|gb|ACH74967.1| phage integrase [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|326624498|gb|EGE30843.1| phage integrase [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
          Length = 341

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 58/315 (18%), Positives = 109/315 (34%), Gaps = 53/315 (16%)

Query: 19  QNWLQNLEIERGLSKLTLQS---YECDTRQFLIFLAFYTE--EKITIQTIRQLSYTEIRA 73
           + WL   E  R LS++  Q    Y          +A  +     +      +L+  +   
Sbjct: 49  KPWLGEKEDRRHLSEVIDQWHLLYGQTLADPKRLMAKRSIICNGLGDPIASELTAGDFTK 108

Query: 74  FISKRRTQKIG-----------DRSLK---RSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           +   R   ++             R++    R+LS +  F    K    +  + +  +   
Sbjct: 109 YREARLKGEVKNEDGVLMSPVKPRTVNLEQRNLSSV--FGTLKKLGHWSAPNPLAGLPTF 166

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K +      L  ++   L+D      S            I  +    G R SEA +L   
Sbjct: 167 KIAEGELAFLAPEEIKRLLDACADSQS-------PSLLMIAKVCLATGARWSEAENLQ-G 218

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           + +        + KG K R VP+   + + +                 P  RG    P  
Sbjct: 219 HQLSKYRITYTKTKGKKNRTVPISQDLYEEL-----------------PKNRGKLFTPC- 260

Query: 240 PGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
               ++   +  +  G+  P     H LRH+FA+H + NGG++  ++ ILGH  +  T +
Sbjct: 261 ----RKAFERAVKRAGIELPEGQCTHVLRHTFASHFMMNGGNILVLRDILGHADIKMTMV 316

Query: 298 YTNVNSKNGGDWMME 312
           Y +    +  D + +
Sbjct: 317 YAHFAPDHLEDAVTK 331


>gi|188526775|gb|ACD62269.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 50/94 (53%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 65  RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 124

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 125 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|13095806|ref|NP_076696.1| integrase [Lactococcus phage bIL309]
 gi|15672418|ref|NP_266592.1| integrase [Lactococcus lactis subsp. lactis Il1403]
 gi|12723313|gb|AAK04534.1|AE006280_10 prophage pi1 protein 01, integrase [Lactococcus lactis subsp.
           lactis Il1403]
 gi|12830995|gb|AAK08349.1|AF323670_1 integrase [Lactococcus phage bIL309]
          Length = 377

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 58/325 (17%), Positives = 125/325 (38%), Gaps = 39/325 (12%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L    + W++  +  + +S  T + Y           +       TI+T+ ++ Y E+  
Sbjct: 62  LTDHFKQWIEIFKKGK-VSDGTYRKYLYTLSVLKKHFST-----ATIKTMNRVKYQEMLN 115

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLP-RALN 130
                  +   D S+K+    +++ L+ L    I          +   K S S   + L+
Sbjct: 116 ----EFAEGHSDSSVKQINVHVRASLENLLDDFIIKNDFTKGAISKGGKGSKSAELKYLD 171

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            +    L+       + E       +S ++Y+    G+R SE L LT  N+  ++  + +
Sbjct: 172 FEDFTKLI-----ALAKEKINPIYSSSFMIYIAAMTGMRFSELLGLTWDNVDFEKGQIYV 226

Query: 191 QGKGD-------------KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGI 233
           +   D              +R + +  S  + ++ Y +     L      P    +F  I
Sbjct: 227 KRTWDIYKNNFAPTKNDQSVRFLAIDSSTMQVMINYKEQQEKLLKRLEIEPEHPFVFYNI 286

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           +   +      + +R + + LG     T H LRH+ A+ +L  G ++  +   LGH  L+
Sbjct: 287 KNGLITNNSLNKQLRNMCKKLGFKKIITCHGLRHTHASTMLYKGINILYVSKRLGHSSLN 346

Query: 294 TTQ-IYTNV---NSKNGGDWMMEIY 314
            T  +Y+++     +   + + +I+
Sbjct: 347 VTMSVYSHILKELEEKDNENIKKIF 371


>gi|297172260|gb|ADI23238.1| integrase [uncultured nuHF2 cluster bacterium HF0770_13K08]
          Length = 342

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 113/302 (37%), Gaps = 30/302 (9%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           I SF+   +   + + L   +G S           R  L +L  +T  ++  + I +L  
Sbjct: 63  IPSFKRNADFVAYFKKLGERKGQSSK-------VWRNVLNYLEVFTGGRVVFKNIDELWL 115

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            + + F+     +K+   +     +  K+ L    + +I  ++   +++N+K+ ++    
Sbjct: 116 EKWQRFLL----EKVSRNTAVGYYALTKAALNQAVRDRIIQDNPCKHVQNIKRQDTERIF 171

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L   +   L + +    + +          +       GL +    +LT + I  D    
Sbjct: 172 LTFAEIKQLSETLPKDENSQEVAR------MFLFGCFTGLSLGNLETLTYKQIESDTVKF 225

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
             + K      VPL  +    I           + +    +F        +    Q  + 
Sbjct: 226 -FRSKTKTWHHVPLNETALSLI-------GDTFDCDPNGRIFNTP-----SRRYSQTLVG 272

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +  +  G+      H  RH+FAT  LS+G D+ ++  ++GH +L TTQIY  V  +    
Sbjct: 273 KWGKQAGIKKHVHMHVSRHTFATLNLSSGADIYTVSKLIGHKKLDTTQIYAKVIDEKKRQ 332

Query: 309 WM 310
            +
Sbjct: 333 AV 334


>gi|284800799|ref|YP_003412664.1| integrase [Listeria monocytogenes 08-5578]
 gi|284993985|ref|YP_003415753.1| integrase [Listeria monocytogenes 08-5923]
 gi|284056361|gb|ADB67302.1| integrase [Listeria monocytogenes 08-5578]
 gi|284059452|gb|ADB70391.1| integrase [Listeria monocytogenes 08-5923]
          Length = 309

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 83/213 (38%), Gaps = 21/213 (9%)

Query: 103 KKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
               + +++    +    +  +   +  + LN+ +   L+  + L       W       
Sbjct: 90  VDEGVISQNPTRKIVIKGKTPRPKKA--KFLNQFEVQALLKELNLKEDINWDW------- 140

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212
            + L+   GLR SEAL+LTP +    +  + I    D   +             RK  ++
Sbjct: 141 FILLIIKTGLRFSEALALTPSDFDFSKQKIIINKTWDYKMVTGSFQPTKNESSNRKIQID 200

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +     F   + ++ P         +        ++ L     +P + T H+LRH+ A+ 
Sbjct: 201 WQLAMQFSQLIKMKGPDKPIFVKSRVFNSTINNRLKVLCENANIP-TITVHSLRHTHASL 259

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           LL  G  + S+ + LGH  ++TTQ  Y ++  +
Sbjct: 260 LLFAGVSIASVANRLGHSSMTTTQETYLHIIQE 292


>gi|258516772|ref|YP_003192994.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257780477|gb|ACV64371.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 389

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 58/305 (19%), Positives = 106/305 (34%), Gaps = 39/305 (12%)

Query: 23  QNLEIERGLSKLTLQSYECDTR-QFLIFLAFYTEEKITIQTIRQ----LSYTEIRAFISK 77
           + LE ++ L+  TL  Y+     + L  +     E I    I Q    L    IR     
Sbjct: 72  KWLESKKDLAPKTLYRYKEILNSRILPAMGHLKIEDIKPFHIMQFYGNLQEPGIR---ED 128

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            +   +   ++      + +      K +I   +  L +   K       +  E+    L
Sbjct: 129 GKEGTLSPATVLYHHRLLTNIFNAAVKWQIILTNPALRVEAPKAKKHKATSYEEEDTAAL 188

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------ 191
           +  +             +  AI+Y+  GCGLR  E + L  ++I   + TL ++      
Sbjct: 189 LSALEEQP--------LKFQAIVYIALGCGLRRGEIMGLEWKDIDLTKGTLEVRQSSQYL 240

Query: 192 ----------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-----LNIQLPLFRGIRGK 236
                           RI+ +       + ++                    LF    GK
Sbjct: 241 PGHGTFAKSPKNESSERIIAVPTETMSLLKQHRVQQNEQRLQVGGLWQASDRLFTTWDGK 300

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT- 295
           P++P    ++     +   L      H LRH+ A++++  G  L++I S LGH   +TT 
Sbjct: 301 PMHPDSITKWFSGFLKNNNLS-PLPFHGLRHTAASYMIKAGIPLKNIASRLGHSSPNTTL 359

Query: 296 QIYTN 300
            IY +
Sbjct: 360 NIYAH 364


>gi|254508894|ref|ZP_05121003.1| integrase [Vibrio parahaemolyticus 16]
 gi|219548208|gb|EED25224.1| integrase [Vibrio parahaemolyticus 16]
          Length = 391

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 107/262 (40%), Gaps = 18/262 (6%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           +  + +  +   +I+ +++ +R       +++ + + +K+ L    + +     N+ +++
Sbjct: 137 LADKPLEDIKAWDIQQWVTDKRKLGRAPATIEYTFNRLKAALNRAVEWEFIESHNLSSVK 196

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA-----ILYLLYGCGLRISE 172
             K+ N+  R L+E +   L+  +    +   +  D+   A     ++ L    G+R  E
Sbjct: 197 IAKEDNTRIRYLSELEEAALLSALAAREAQLCEDNDSHQYADFFTPLITLAMHTGMRKGE 256

Query: 173 ALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
            L+L  +++  +   L I     K  K R +P+  +V   + ++      +  + +    
Sbjct: 257 MLTLRWESVSFENRYLTILSENAKSKKKRTIPMNDTVFNMLSQWRAQNLNEEYVFVHEGK 316

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
                  P          + L +  G+  +   H LRH FA+ L+  G DL  ++ +LGH
Sbjct: 317 RVSFFQYP---------WQNLLKAAGIS-NFRFHDLRHHFASKLVMAGVDLNVVRELLGH 366

Query: 290 FRLSTTQIYTNVNSKNGGDWMM 311
             L  T  Y ++   +    + 
Sbjct: 367 ADLKMTLRYAHLAPAHTAAAVQ 388


>gi|170717950|ref|YP_001784999.1| phage integrase family protein [Haemophilus somnus 2336]
 gi|168826079|gb|ACA31450.1| phage integrase family protein [Haemophilus somnus 2336]
          Length = 299

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 58/309 (18%), Positives = 118/309 (38%), Gaps = 25/309 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +  L    +ER     T++SY+    Q + F      E+I+     +L   E R +   
Sbjct: 3   FEQLLHLFFLERNHRPATIRSYQNVIAQIVKFYPDKEPEQIS-----KLDLLEWRKYCL- 56

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALT 136
               K+   +    +  +K+   Y    ++     N+     ++      + L E+Q   
Sbjct: 57  ---NKMSPITWNSYIRHLKAIFNYAIDNELFEYPKNLFKGLMVRPDKPKKKLLTERQI-H 112

Query: 137 LVDNVLLHTSHETKWIDARN--SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
            ++  L +      ++       A++Y L    +R S+ L L   +I      + I+ + 
Sbjct: 113 FLEISLENEEKLPHYLQPAYFTKALIYTLKYTAIRQSQLLQLKISDIDMTSKIINIRAET 172

Query: 195 DKIRIVP-------LLPSVRKAILEYYDLC---PFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           +K            L P +++ ILE           L    +  L    R K +  G   
Sbjct: 173 NKNHEHHEIPISDKLYPYLKRLILESRARSTSSDEQLFNINRFSLVTTSRNKKMTEGQLV 232

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            + R +  ++G   + T+H  RH+ AT +L   GD+ +++ +LGH  L+ T  Y + + +
Sbjct: 233 HFFRHISEFIG--FTVTSHRFRHTTATEVLKQSGDIYAVKQLLGHKDLTVTLTYIHNDPE 290

Query: 305 NGGDWMMEI 313
                +  +
Sbjct: 291 MLRKHVNSL 299


>gi|295676653|ref|YP_003605177.1| integrase family protein [Burkholderia sp. CCGE1002]
 gi|295436496|gb|ADG15666.1| integrase family protein [Burkholderia sp. CCGE1002]
          Length = 414

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 65/340 (19%), Positives = 118/340 (34%), Gaps = 61/340 (17%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + WL N    +     T  +Y  +  + L++      + ++  ++        +AF
Sbjct: 51  LDAVRAWLSNYADTKT----TFDNYRKEAERLLLWAVVQLGKPLS--SLTHEDLLLFKAF 104

Query: 75  ISK-------------RRTQK----------IGDRSLKRSLSGIKSFLKYLKKRKITTES 111
           I+              +  +           +   S +++L  + +   +L        +
Sbjct: 105 IADPQPAARWVSANGGKYARGDARWRPFNGPLSPASQRQALIILNAMFTWLVNAGYLRGN 164

Query: 112 NILNMR--NLKKSNSLPRALNEK--QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
            +  +R    + +  + R L+      + L    L   +   +   AR   +  L Y  G
Sbjct: 165 PMALLRQRAKRSAPRVTRYLSTSLWDEVKLFVEQLPQDTDAQRAYYARCRWLTTLFYLQG 224

Query: 168 LRISEALSLTPQNIMD-------DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           +RISE                  DQ  L   GKGDK RIVP+   + + +  Y  L    
Sbjct: 225 MRISEVAGGQMGQFFRRLGADGQDQWWLETLGKGDKERIVPVSAELVQELRSYRTLNGLA 284

Query: 221 L--NLNIQLPL---FRGIRGKPLNPGVFQRYIRQL---------------RRYLGLPLST 260
                  + PL   F+G +   L+       I+ +                         
Sbjct: 285 ALPTRAEETPLVLPFKGRKRC-LSRSAIHDAIKGIFAGAAMWLRARGPEFADRADELERA 343

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +AH LRH+  +H    G DLR+I+  LGH  L+TT +Y +
Sbjct: 344 SAHWLRHTAGSHQADGGVDLRTIRDNLGHVSLNTTSLYLH 383


>gi|226325282|ref|ZP_03800800.1| hypothetical protein COPCOM_03074 [Coprococcus comes ATCC 27758]
 gi|225206630|gb|EEG88984.1| hypothetical protein COPCOM_03074 [Coprococcus comes ATCC 27758]
          Length = 289

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 63/304 (20%), Positives = 109/304 (35%), Gaps = 39/304 (12%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M    L   +   +  E++ +++ L IER  S+ T + Y  D   F  + A         
Sbjct: 1   MSKKKLGGHIMSGMKFEKEIFMKYL-IEREASEATKKKYMTDVTTFYSYAAEA------- 52

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
               ++    + A+      Q     S+   L  +  +L  +   K         +R ++
Sbjct: 53  ---EEIDKELLLAYREWL-VQHYAVSSVNSMLVALNQYLLAVGLGKW-------KLRRVR 101

Query: 121 K----SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
                S  + R L +   + LV         +          I+  L G G+RISE    
Sbjct: 102 VQGCNSKMMERELQKSDYIKLVRKAKEQGKEQL-------VMIMETLAGTGIRISELRYF 154

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
           +  ++   +  +++  KG   R V L   +RK +L Y        N   +  +F    G 
Sbjct: 155 SVDSV--QRGIVKVWNKGKY-RPVILTDQLRKRLLYYI-----RKNRIQKGNVFITRSGH 206

Query: 237 PLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             +     R ++QL    G+       H  RH FA       G+L  +  ILGH  +  T
Sbjct: 207 EKDRSNIWRELKQLAVSAGVETEKVFPHNFRHMFARIFYRVTGNLLQLADILGHSSIEVT 266

Query: 296 QIYT 299
           +IY 
Sbjct: 267 RIYA 270


>gi|152994022|ref|YP_001359743.1| phage integrase family site specific recombinase [Sulfurovum sp.
           NBC37-1]
 gi|151425883|dbj|BAF73386.1| site-specific recombinase, phage integrase family [Sulfurovum sp.
           NBC37-1]
          Length = 366

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 99/273 (36%), Gaps = 30/273 (10%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
                +E I  + I  ++  +I A I     Q    +++ + +  IK+   Y     + +
Sbjct: 110 YKSQLKEYIGSKDIYSITKNDILA-IQTDMAQSRAPKTVNQYIQFIKAVYNYAIAEDLFS 168

Query: 110 -ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
             + +  ++  K  N   R L+  +   L++ V  +                 L    G 
Sbjct: 169 GVNPVKGIKEQKIDNKRERFLSIDEIKALIEEVKENEDL---------YLFTLLSLSTGG 219

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
           R+   +++  +++  + + + +    ++        +  K IL           +     
Sbjct: 220 RLGTIMAIAKKDLDFNNNMITLNDIKNEDTYGGFFDNTLKEIL-----------IKRTAN 268

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYL---GLPL-----STTAHTLRHSFATHLLSNGGDL 280
           L    +   +N    +R + ++   L   G+           HTLRH+FA+ L   G  +
Sbjct: 269 LKPNDKLIVMNERTLRRQLSKVLTKLFNVGIDADDRKNRVVIHTLRHTFASQLAIKGTPI 328

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            +IQ +L H  +  T  Y  +   +G + + E+
Sbjct: 329 FTIQKLLNHKDIKQTLRYAKLAPDSGKEMVHEL 361


>gi|310826836|ref|YP_003959193.1| Site-specific recombinase XerC [Eubacterium limosum KIST612]
 gi|308738570|gb|ADO36230.1| Site-specific recombinase XerC [Eubacterium limosum KIST612]
          Length = 303

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 55/255 (21%), Positives = 101/255 (39%), Gaps = 34/255 (13%)

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +++  ++++  L+ + + L+  + + +   SN+  +    K       L   +   L  
Sbjct: 58  AERLAHKTVRDILTYVHTILREAEAKGLAEASNMPKITMEPKEK---EVLTYSEQKAL-- 112

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG------- 192
                T+   +     + A+L L    GLR+ E   L  ++I  + + LR++        
Sbjct: 113 -----TARLRQSAAPLDMAVL-LALATGLRLGEVAGLRHKDIDLEAAVLRVRRNSQRVYD 166

Query: 193 -------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
                        K  + R    LP    A+L  Y            L    G  G   +
Sbjct: 167 GHDGHTPLKNTTPKTRRSRRDIPLPRAFVAVLARYMEDREGQPAAAPLIAAPG--GSAYD 224

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IY 298
           P   +R   +L+   GL    T H+LRHSFAT  L  G D+R++  +LGH  ++ T   Y
Sbjct: 225 PRTIERRFDKLKAEHGLSSGVTFHSLRHSFATRALEAGADMRTVSDLLGHSSVAFTMNCY 284

Query: 299 TNVNSKNGGDWMMEI 313
           ++  +K   + M +I
Sbjct: 285 SHSATKLKREQMEKI 299


>gi|281424449|ref|ZP_06255362.1| putative integrase [Prevotella oris F0302]
 gi|281401435|gb|EFB32266.1| putative integrase [Prevotella oris F0302]
          Length = 407

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 59/314 (18%), Positives = 126/314 (40%), Gaps = 30/314 (9%)

Query: 9   IVSFELLKERQ-NWLQNLE-IERGLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQ 65
           ++ + L K+R  N+L   +      +K  L+  +    +F  FL   Y   + +I+    
Sbjct: 110 MLGYRLKKDRNVNFLDYYQAYIDSYTKKDLRMIKIALNRFKDFLKEQYPLYEFSIKP-DL 168

Query: 66  LSYTEIRAFISKRRTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           +    +  F+   +++ +G   +S+ +     K  ++Y    ++  +     +       
Sbjct: 169 IIKDMMERFVEYLQSRSVGEGAKSIYQRF---KKVVRYAIDHEVMLKDPCKGVVCKVDEQ 225

Query: 124 SLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            L +  L+  +  +L+     + +   +       A +  LY CGLR  +   LT +NI 
Sbjct: 226 ILRKDVLSMDEIQSLIQCHYDNENPNVR------RAFILCLY-CGLRFCDVKDLTYKNID 278

Query: 183 DDQSTLRI--QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLN 239
                L+              ++  +   +L      P DLN +I  LP +         
Sbjct: 279 YTNHLLKFEQNKTKGHSANSGVIIPLNDGLLSLIGEAPEDLNSSIFNLPSYESCS----- 333

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                + +++  +  G+    + H  RHSFA ++L+NG +++++ S+LGH  L  T+ YT
Sbjct: 334 -----KSVKRWVKRAGINKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYT 388

Query: 300 NVNSKNGGDWMMEI 313
               K   + +  +
Sbjct: 389 RAVDKLKSEAINSL 402


>gi|116751410|ref|YP_848097.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
 gi|116700474|gb|ABK19662.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
          Length = 415

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 93/230 (40%), Gaps = 21/230 (9%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +   ++K  L  ++  + +  K+ + T +    +   K +N     L   +   L+D + 
Sbjct: 175 LKPGTVKNVLELLRRIINFGVKKNLCTGAGFA-IELPKVNNLRTEDLTPDELAKLMDAI- 232

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVP 201
                  K  +   + ++ +    G+R  E   L   ++  ++  + I+G KG   + +P
Sbjct: 233 ------EKDENLIAANLMKMALFTGMRRGELFRLKWSDLDFERGFIHIRGPKGGVDQTIP 286

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           +    RK +  +               +F G  G         + + +++   GLP    
Sbjct: 287 VNEEARKILQSH--------RRTNSGFVFPGRGGHQ--RIDIHKSVNKIKEAAGLPKGFR 336

Query: 262 A-HTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           A H LRH++A+ L S+G  DL ++Q +L H   + TQ Y ++      + 
Sbjct: 337 ALHGLRHAYASMLASSGKVDLYTLQRLLTHKSPTMTQRYAHLRDSALRNA 386


>gi|237722535|ref|ZP_04553016.1| transposase [Bacteroides sp. 2_2_4]
 gi|229448345|gb|EEO54136.1| transposase [Bacteroides sp. 2_2_4]
          Length = 412

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 51/294 (17%), Positives = 105/294 (35%), Gaps = 32/294 (10%)

Query: 34  LTLQSYE------CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
            T+ +Y           +F+   + Y    I+I+ I  +  T+   ++  R T K G  +
Sbjct: 128 KTIATYRKYEVTRRHLAEFIQ--SKYNLSDISIKEITPMFITDFELYL--RTTCKCGFNT 183

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             + +   K  +   +   I       + + ++        L E +   ++   ++    
Sbjct: 184 TAKFMQFFKRIILIARNNGILIGDPFASYK-IRLEKVDRGYLTEDEIKIILKKKMVS--- 239

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLP 204
             +    R+  I       GL   +  +L   NI    D    +  + +     +   L 
Sbjct: 240 -ERLEQVRDVFIFSCF--SGLAYVDVANLKEDNIRKSFDGNLWIITKRQKTNTDVNVPLL 296

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            + K ILE Y     D           G     ++      Y++++    G+  + T H 
Sbjct: 297 DIPKMILEKYKGKLPD-----------GKVLPIISNQKLNAYLKEIADVCGIKKNLTFHL 345

Query: 265 LRHSF-ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            RH+F  T  L+ G  + ++  +LGH  + TTQIY  + +    + M  +  + 
Sbjct: 346 ARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNNKISNDMQGLDKKF 399


>gi|323146135|gb|ADX32374.1| phage integrase [Cronobacter phage ESSI-2]
          Length = 338

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 65/323 (20%), Positives = 117/323 (36%), Gaps = 54/323 (16%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQS-----YECDTRQFLIFLAFYTEEKITIQTI- 63
           ++ EL  E + WL   +  R LS   L +     Y          ++        +    
Sbjct: 42  INAEL--EDKPWLGEKQDNRRLSD--LINLWYDLYGRTLSDSNRMMSKLKAICAGMGDPI 97

Query: 64  -RQLSYTEIRAFISKR----------RTQKIGDRSLK---RSLSGIKSFLKYLKKRKITT 109
              ++  +   +   R          R   I  +++    R+LS +  F    K      
Sbjct: 98  ASNITAADFSEYREGRLKGEIPDITGRCMPIQPQTVNHEQRNLSAV--FGTLKKLGHWQL 155

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
            + +  +   K    +   L   +  TL++   L+ S+ +  +      +  +    G R
Sbjct: 156 PNPLAGIPTFKVDEKMVSFLYPAEIKTLLEY--LNESNSSSVL-----LVAKICLATGAR 208

Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
            SEA +L    +   + T R   K  K+R VP+   +   I                 P 
Sbjct: 209 WSEAENLEGAQVTPYRITYR-NTKNKKVRSVPISEKLYNEI-----------------PK 250

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
            RG    P     F+R I++    + LP     H LRH+FA+H + NGG++  ++ ILGH
Sbjct: 251 KRGRLFTPC-RKTFERVIQKAG--IDLPEGQCTHVLRHTFASHFMMNGGNILVLKDILGH 307

Query: 290 FRLSTTQIYTNVNSKNGGDWMME 312
             +  T IY +    +  D + +
Sbjct: 308 SDIKMTMIYAHFAPTHLEDAVTK 330


>gi|260683666|ref|YP_003214951.1| integrase [Clostridium difficile CD196]
 gi|260687326|ref|YP_003218460.1| integrase [Clostridium difficile R20291]
 gi|260209829|emb|CBA63704.1| integrase [Clostridium difficile CD196]
 gi|260213343|emb|CBE04934.1| integrase [Clostridium difficile R20291]
          Length = 380

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 62/304 (20%), Positives = 122/304 (40%), Gaps = 37/304 (12%)

Query: 31  LSKL-TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            S+  +L +Y      ++     Y    I    I+ L    I+ +I K  + K+  +S+K
Sbjct: 85  YSENISLATY----NNYVSICKNYINPSIGKYKIQDLHPVHIQNYIDKL-SYKLNPQSIK 139

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             ++ +K  +K   + K+  E+ + ++   +         + +Q + L+D   L  + E 
Sbjct: 140 IHINILKLAIKRAYRLKLIKENVMDSIEAPRYKKFKNEIYDREQMIKLLD---LAKNTEM 196

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---------------KG 194
           +         + L  G GLRISE L LT  NI  +++T+ +                   
Sbjct: 197 ELP-------INLAIGLGLRISEVLGLTWDNIDFEENTITVNKITSRINGSVILKEPKTE 249

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNI----QLPLFRGIRGKPLNPGVFQRYIRQL 250
             +R +     +   + EY      +L  +        LF   + +P+   V  +  ++ 
Sbjct: 250 SSVRKISSPKELMSLLKEYKIKQNKNLLKSSIRNNNNLLFFNKKCEPIAEDVMSKKFKRF 309

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDW 309
                LP     H LRHS  T L+++   ++ I   +GH  +STT  +Y++V  +   + 
Sbjct: 310 LEKNELP-HIRFHDLRHSHVTLLINSKVPIKVISERVGHSNISTTLSVYSHVLKEMDKEA 368

Query: 310 MMEI 313
             +I
Sbjct: 369 SDKI 372


>gi|154000944|gb|ABS57040.1| integrase [uncultured bacterium]
          Length = 158

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/94 (37%), Positives = 51/94 (54%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +  L  F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 65  RAGHSWPWLWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 124

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 125 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|2654007|gb|AAD03774.1| integrase [Mycobacterium phage Ms6]
          Length = 372

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 58/314 (18%), Positives = 111/314 (35%), Gaps = 36/314 (11%)

Query: 4   NNLPEIVSFEL--LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           N  P     EL   +  ++ + +L    G+ + T+  YE        +LA   E  +   
Sbjct: 62  NPAPRGTKSELTVAEWIRHHIDHLT---GVEQYTIDKYE-------QYLANDIEPNLGDI 111

Query: 62  TIRQLSYTEIRAFISKRRT------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
            + +LS  +I  ++    T           ++L+     +   L     R   + +    
Sbjct: 112 PLSKLSEEDIARWVKVMETTGGRDGNGHAPKTLRNKYGFLSGALNAAVPR-YLSTNPASG 170

Query: 116 MRNLKKSNSLPR--ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
                    LPR  A ++ +   L                     ++  +   GLR  E 
Sbjct: 171 -------RRLPRGNAEDDDEIRMLTHAEFDRLRDAVTPHW---KLMVQFMVSTGLRWGEV 220

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPL--LPSVRKAILEYYDLCPFDLNLNIQ-LPLF 230
            +L P+++  + ST+R++          +   P  +++             L++    +F
Sbjct: 221 SALQPRHVDLETSTIRVRQAWKYSSAGYVLGPPKTKRSRRTVDVPARLLERLDLSNEFVF 280

Query: 231 RGIRGKPLN-PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
               G P+  PG  +R         GL    T H LRH++A+  L+ G  +  +   LGH
Sbjct: 281 VNTDGGPVRYPGFLRRVWNPAVEKAGLVPRPTPHDLRHTYASWQLTGGTPVTIVSRQLGH 340

Query: 290 FRLSTT-QIYTNVN 302
             +  T   YT+V+
Sbjct: 341 ESIQITVDTYTDVD 354


>gi|254454307|ref|ZP_05067744.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198268713|gb|EDY92983.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 422

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 97/295 (32%), Gaps = 28/295 (9%)

Query: 42  DTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--KIGDRSLKRSLSG----- 94
           D R  +         ++ +  +       +   +++ R +  K    +  R L G     
Sbjct: 112 DQRSMMAKFIAPAWGRMLVTEVSSYDVELLLNRVAEGRARPAKAKPNNRARKLQGSKPTP 171

Query: 95  ---------IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
                    ++    Y  K     ++  +  R  +      R L++++   L     L  
Sbjct: 172 VRANRVGEVVRKMFAYAVKWGWREDNPAMGFR-PRMETPRERYLSQEEIARL--ATALDR 228

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           + +T+  +     +L      G R+ E      ++   +  +        K R V  +P 
Sbjct: 229 AEDTRAANIIRICML-----TGARVGEVRQARFEDFNLEHLSWTKPATTTKQRRVHRVPI 283

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              A                   LF             +R+ ++++R  G+      H L
Sbjct: 284 SDDA--AVIVRQRRQAVYPGCPWLFPSDTPGH-PVQEVRRFWKRIQREAGIE-DVRIHDL 339

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           RH+FA+ L+S G  L  I  +LGH ++ TTQ Y ++        +  +     P 
Sbjct: 340 RHTFASLLVSGGASLEMIGKLLGHSQMQTTQRYAHLMDSPLRAGVDAVASAFKPK 394


>gi|254383832|ref|ZP_04999180.1| phage integrase [Streptomyces sp. Mg1]
 gi|194342725|gb|EDX23691.1| phage integrase [Streptomyces sp. Mg1]
          Length = 426

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 61/327 (18%), Positives = 112/327 (34%), Gaps = 65/327 (19%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL  + +   L + T   Y    R        +    + ++ + +L+  ++R F+   RT
Sbjct: 87  WLDGVAVH-HLRENTHTRYAASIR-------LHLNPGLGVKKLARLTTRDVRTFLDGLRT 138

Query: 81  ------------------------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
                                   +++   ++    + +KS L++  +      +   N+
Sbjct: 139 TCQCCAQNRDSVRRSCCAIGQCCGKRLSPLTVTYVHAVLKSALEHAVREDELPRNVARNV 198

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           +         + L   +A  L     LH ++  +       A+  L    GLR  E L L
Sbjct: 199 KTTTPRPRRFQPLTAAEARQL-----LHAANGDRLN-----ALYELALRTGLRKGELLGL 248

Query: 177 TPQNIMDDQSTLRIQ----------------GKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
             +++  D  T  I                       R + L      ++  + +    +
Sbjct: 249 HWEDLDLDGGTATIHRSLQRTRSQGLTVLNTKTLASDRRIALPTECLNSLKTHQERQQEE 308

Query: 221 LNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
                        +F    G+PL+P    R  R+L     L  +   H LRHS AT LL 
Sbjct: 309 RQTAGTSWTDNGLVFTTPNGQPLDPTNLTRRFRRLLHGAEL-RTIRFHDLRHSTATLLLE 367

Query: 276 NGGDLRSIQSILGHFRLSTTQ-IYTNV 301
            G DL  I+ +LGH  +  T  +Y +V
Sbjct: 368 QGVDLVVIKELLGHAHIGVTAGVYAHV 394


>gi|323714044|emb|CBZ41779.1| delta IntI1 integrase [Corynebacterium diphtheriae]
          Length = 252

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 91/218 (41%), Gaps = 28/218 (12%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLPTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
             T+ ++ GKG K R + L  S+  ++ E         
Sbjct: 162 HGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWW 199


>gi|307565783|ref|ZP_07628249.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345510|gb|EFN90881.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 409

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 95/277 (34%), Gaps = 19/277 (6%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSLKRSLSG 94
           +  Y         F+      K++     QL+   I  F           + S     + 
Sbjct: 134 IHGYHSTRIHLQKFIQRKY--KVSDLAFSQLTENFIHEFQQYFLGECGFQESSFYNVATH 191

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +K+  +   +  +        ++  K +  LP+AL+  +   L          E +    
Sbjct: 192 LKTVCRLAYREGLADLLLFDKVKISKGNKKLPKALDRGEFEKLKTLHFEDLEEEMETA-- 249

Query: 155 RNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
               I       G    + + L   + + DD+ +L ++    K  +   +  + +AI   
Sbjct: 250 --RDIFLFACYTGAAYCDLMELDKSHLVRDDEGSLWLKFNRQKTSVPCRVKLLPEAIR-- 305

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                        LP         +    +Q Y++ LR   G+    T HT RH+FAT +
Sbjct: 306 LMEKLHSDERETLLPF--------MGYATYQSYLKALRLRAGISFPFTTHTARHTFATLI 357

Query: 274 -LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            L  G  + ++  +LGH  +S T+ Y  V  +   + 
Sbjct: 358 TLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFEE 394


>gi|301308504|ref|ZP_07214458.1| integrase [Bacteroides sp. 20_3]
 gi|300833974|gb|EFK64590.1| integrase [Bacteroides sp. 20_3]
          Length = 444

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 106/291 (36%), Gaps = 31/291 (10%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEIRAFISKRR-TQ 81
           L +    +  TL  Y+   R    F+  + +EK  +  I  + L  + I AF    R  +
Sbjct: 125 LRVGVNRALNTLYQYKNTYR----FMEKFLKEKYKVSDIPFKALDESFIEAFELYLRIDR 180

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
           K+   +    +  +K   +    R +   S   +  +  K       LN ++   L+   
Sbjct: 181 KLQTGTSIGHVQRLKHIAQIAVNRAVVPYSPFKDF-SPMKPKQKQMYLNREELDKLM--- 236

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTLRI---QGKGDKI 197
               +            +       G+   +  +LT +N++ D +  L I   + K    
Sbjct: 237 ---ATTFDTPNRNFTRDMFLFSVFTGICYCDMRNLTEKNVVQDYEGNLWIETRRQKTGTP 293

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
             V LL    K + +Y  +            LF       L       +++++    G+ 
Sbjct: 294 ENVRLLDIAVKIMEKYRGMA-------PDGKLFP-----MLTKESMNIHLKKMAVQCGID 341

Query: 258 LSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            + + H  RHSFA+   LS G  + ++   +GH  +STTQ Y  V ++   
Sbjct: 342 RNLSFHMARHSFASQVCLSLGVPIETVSKAMGHRNISTTQRYAKVTNEKVD 392


>gi|294637853|ref|ZP_06716123.1| type 1 fimbriae regulatory protein FimB [Edwardsiella tarda ATCC
           23685]
 gi|291088971|gb|EFE21532.1| type 1 fimbriae regulatory protein FimB [Edwardsiella tarda ATCC
           23685]
          Length = 179

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 57/142 (40%), Gaps = 1/142 (0%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLC 217
           ++Y+ +  GLR+SE LSL   +I  D  ++ I   K       PLLP   + I  +    
Sbjct: 1   MIYMGFIHGLRVSELLSLRLSDIDLDDQSIYIHRLKNGLSTNHPLLPEEVEVIRVWLQAR 60

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
                      LF    G  L    F + I    +   + + +  H LRH+    L   G
Sbjct: 61  RKIRYAADSEWLFLSRLGTRLTRQQFYKIITDYGKKAEISICSHPHMLRHACGYALADRG 120

Query: 278 GDLRSIQSILGHFRLSTTQIYT 299
            D R IQ  LGH  +  T  YT
Sbjct: 121 IDTRLIQDYLGHRNIRHTVRYT 142


>gi|209517723|ref|ZP_03266560.1| integrase family protein [Burkholderia sp. H160]
 gi|209501898|gb|EEA01917.1| integrase family protein [Burkholderia sp. H160]
          Length = 410

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 67/340 (19%), Positives = 118/340 (34%), Gaps = 61/340 (17%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + WL N    +     T  +Y  +  + L++      + ++  ++        +AF
Sbjct: 47  LDAVRAWLSNYADTKT----TFDNYRKEAERLLLWAVVQLGKPLS--SLTHEDLLLFKAF 100

Query: 75  ISK----------------RRTQK-------IGDRSLKRSLSGIKSFLKYLKKRKITTES 111
           I+                 R  Q+       +   S +++L  + +   +L        +
Sbjct: 101 IADPQPAARWVSANGGKYARGDQRWRPFNGPLSPASQRQALIILNAMFTWLVNAGYLRGN 160

Query: 112 NILNMR--NLKKSNSLPRALNEK--QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
            +  +R    + +  + R L+      + L    L   +   +   AR   +  L Y  G
Sbjct: 161 PMALLRQRAKRSAPRVTRYLSTSLWDEVKLFVEQLPQDTDAQRAYYARCRWLTTLFYLQG 220

Query: 168 LRISEALSLTPQNIMD-------DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           +RISE                  DQ  L   GKGDK RIVP+   + + +  Y  L    
Sbjct: 221 MRISEVAGGQMGQFFRRLGADGQDQWWLETLGKGDKERIVPVSAELVQELRSYRTLNGLA 280

Query: 221 L--NLNIQLPL---FRGIRGKPLNPGVFQRYIRQL---------------RRYLGLPLST 260
                  + PL   F+G     L+       I+ +                         
Sbjct: 281 ALPTRAEETPLVLPFKGRNRC-LSRSAIHDAIKGIFAGAAMWLRARGPEFADRADELERA 339

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +AH LRH+  +H    G DLR+I+  LGH  L+TT +Y +
Sbjct: 340 SAHWLRHTAGSHQADGGVDLRTIRDNLGHVSLNTTSLYLH 379


>gi|224477023|ref|YP_002634629.1| putative integrase [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421630|emb|CAL28444.1| putative integrase [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 390

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 43/324 (13%), Positives = 101/324 (31%), Gaps = 50/324 (15%)

Query: 32  SKLT--------LQSYECDTR----QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           S  T        +  Y  D +    +       + +     + I+ ++  + + F+    
Sbjct: 61  SAHTFSYIADEFINHYRKDAKVSSVRAREKAIKHAKVAFGDKAIQSITKHQYQQFVDDIS 120

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL---------PRALN 130
           T+      +   ++      KY     +  +     ++  K+  ++          + L 
Sbjct: 121 TR-FSKNYVDSIVASTNLVFKYALDMNLLKKLPNEGIKRPKQKVTVEELEHTELKQKFLE 179

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           +++    ++           +       +  L+   G R  E L+L   ++  D  T+ I
Sbjct: 180 KEELFEFLNVAKNDHPPLNSFE------LFTLMAYSGCRAGEILALKWSDVDFDNYTINI 233

Query: 191 QGKGDKIRIVP------------------LLPSVRKAILEYYDLCPFDLNLNIQL---PL 229
                                        + P V K + +Y           + +    +
Sbjct: 234 TKTYYNPNNNKKNYQILTPKTNASIGKLSIDPHVIKLLKDYKVNVQDKWKNELYVDNNFV 293

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F    G PL      ++I+ +     +  + T H+ R++    L+  G  ++ IQ  L H
Sbjct: 294 FTDNNGYPLVIKKLSQWIQSIMSKTNIDKNITTHSFRYTHCALLIEAGVHIKEIQERLRH 353

Query: 290 FRLSTTQ-IYTNVNSKNGGDWMME 312
             ++TT  IY  +      D   +
Sbjct: 354 KDINTTMNIYAKITDSYKKDASQK 377


>gi|222151187|ref|YP_002560341.1| integrase [Macrococcus caseolyticus JCSC5402]
 gi|222120310|dbj|BAH17645.1| integrase [Macrococcus caseolyticus JCSC5402]
          Length = 384

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 51/265 (19%), Positives = 98/265 (36%), Gaps = 37/265 (13%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR----- 117
           I +++ T  +  I+K         ++K++ S +   ++  K   + + +    +      
Sbjct: 115 IDKVTPTMQQKVINKLFEYNYSISTIKKTNSLMFRAMERAKFDGLISVNPAEYIEFRITD 174

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
            +KK+  +P+         L+   L     + K  +  +  +  L+   GLR+ EA +L 
Sbjct: 175 KVKKAEYIPK--------DLIKPFLT----DVKRRNIYHYYLFRLIIETGLRVGEACALK 222

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---------- 227
             +   +   + +    D+ R V      +     Y     +D  LN+            
Sbjct: 223 LSDFDKNNLYITVDSSYDQKRDVLGNTKTKHHRKVYITRELYDEMLNLTKLHETNKIIIG 282

Query: 228 --------PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
                    LF    GKPL+       +    + + L    + H LRH+ AT LL     
Sbjct: 283 SEYSNEYNFLFVNEFGKPLSRSSIHNTMIYCSKKI-LGQQISVHKLRHTHATLLLEANVP 341

Query: 280 LRSIQSILGHFRLSTTQ-IYTNVNS 303
           ++ IQ  LGH  +  T+ IY +V  
Sbjct: 342 MKVIQERLGHQSMEMTERIYAHVTP 366


>gi|315144921|gb|EFT88937.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2141]
          Length = 392

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 62/335 (18%), Positives = 128/335 (38%), Gaps = 59/335 (17%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q W +     R L++  + +Y+    Q  I   +   +K     +  LS  E++ F+   
Sbjct: 66  QKWFEYY---RSLNEQKVATYDKREEQVKILNRWIGGKK-----LSSLSSEELQKFLFIL 117

Query: 79  RTQK-------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP----- 126
           + +            SL+  +  +     Y KK+ +  E+ +  ++  K   SL      
Sbjct: 118 KEKGIDGVNVGYAKNSLQSLVQVLNMVFNYCKKKNLINENPMKFVKMPKYQLSLKDLKES 177

Query: 127 ------RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                 + L   +    ++  ++       + +   S + ++L+  G R+SEAL+L PQ+
Sbjct: 178 VNSLEDKFLTVDELRAFLNYGIV-------YEELPMSVLFHVLFYTGCRVSEALALQPQD 230

Query: 181 IMDDQSTL---------------RIQGKG--DKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
           I  +++ +               RI+        R VP+ P V + + E  D+       
Sbjct: 231 IDFERNEILFYKQTAVKGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRN 290

Query: 224 N----IQLPLF----RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
           +     +  LF     G RG P        ++++     G+      H  RH+ A+ L++
Sbjct: 291 SNFVVDETYLFVYLDPGKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMAS-LVA 349

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                  ++  LGH   +T++IY ++ S      +
Sbjct: 350 EYCSWDVLKDHLGHTDSTTSKIYRHLTSTEKLKPL 384


>gi|291459452|ref|ZP_06598842.1| site-specific recombinase, phage integrase family [Oribacterium sp.
           oral taxon 078 str. F0262]
 gi|291418051|gb|EFE91770.1| site-specific recombinase, phage integrase family [Oribacterium sp.
           oral taxon 078 str. F0262]
          Length = 348

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 58/322 (18%), Positives = 105/322 (32%), Gaps = 62/322 (19%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           RGL   T Q+Y+              +       I+++  ++++ F +    ++ +   +
Sbjct: 7   RGLKDSTFQNYKYT-------YTLNVKPSFGRMLIKKVRKSDVKRFYNSLADERNLKATT 59

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNM-------RNLKKSNSLPRALNEKQALTLVDN 140
           +    + +               +   N+          K      R L  ++   L  N
Sbjct: 60  IDGIHTVLHQVFDLAVDDNYIRSNPCDNVLRELKQSHVFKTEKR--RGLTRQE-QDLFLN 116

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK------- 193
            L  +     W       I  ++ G GLR+ EA  L   +I  +   + +          
Sbjct: 117 FLKKSEKYRHW-----YPIFAIMIGTGLRVGEATGLRWCDIDLEDGFIDVNHTLVYYQHE 171

Query: 194 -------------GDKIRIVPLLPSVRKAILEYYDL------CPFDLNLNIQLPLFRGIR 234
                            RIVP+L  V++A LE                      +F    
Sbjct: 172 VNGCYFNINTPKTEAGRRIVPMLDFVKEAFLEEKHRQEREGIRSLAQVDGYADFIFVNRF 231

Query: 235 GKPLNPGVFQRYIRQLRRYLG------------LPLSTTAHTLRHSFATHLLSNGGDLRS 282
           G   +     + IR++ R               L    + H+LRH+F T +   G +++ 
Sbjct: 232 GMLQHQSTLNKAIRRITRDCNDEVLLKDPEATVLLPHFSCHSLRHTFTTRMCEAGVNVKV 291

Query: 283 IQSILGHFRLSTT-QIYTNVNS 303
           IQ  LGH  +STT  IY +V  
Sbjct: 292 IQDTLGHADISTTLNIYADVTK 313


>gi|254975655|ref|ZP_05272127.1| integrase [Clostridium difficile QCD-66c26]
 gi|255093041|ref|ZP_05322519.1| integrase [Clostridium difficile CIP 107932]
 gi|255101198|ref|ZP_05330175.1| integrase [Clostridium difficile QCD-63q42]
 gi|255314783|ref|ZP_05356366.1| integrase [Clostridium difficile QCD-76w55]
 gi|255517458|ref|ZP_05385134.1| integrase [Clostridium difficile QCD-97b34]
 gi|255650568|ref|ZP_05397470.1| integrase [Clostridium difficile QCD-37x79]
          Length = 370

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 62/304 (20%), Positives = 122/304 (40%), Gaps = 37/304 (12%)

Query: 31  LSKL-TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            S+  +L +Y      ++     Y    I    I+ L    I+ +I K  + K+  +S+K
Sbjct: 75  YSENISLATY----NNYVSICKNYINPSIGKYKIQDLHPVHIQNYIDKL-SYKLNPQSIK 129

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             ++ +K  +K   + K+  E+ + ++   +         + +Q + L+D   L  + E 
Sbjct: 130 IHINILKLAIKRAYRLKLIKENVMDSIEAPRYKKFKNEIYDREQMIKLLD---LAKNTEM 186

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---------------KG 194
           +         + L  G GLRISE L LT  NI  +++T+ +                   
Sbjct: 187 ELP-------INLAIGLGLRISEVLGLTWDNIDFEENTITVNKITSRINGSVILKEPKTE 239

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNI----QLPLFRGIRGKPLNPGVFQRYIRQL 250
             +R +     +   + EY      +L  +        LF   + +P+   V  +  ++ 
Sbjct: 240 SSVRKISSPKELMSLLKEYKIKQNKNLLKSSIRNNNNLLFFNKKCEPIAEDVMSKKFKRF 299

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDW 309
                LP     H LRHS  T L+++   ++ I   +GH  +STT  +Y++V  +   + 
Sbjct: 300 LEKNELP-HIRFHDLRHSHVTLLINSKVPIKVISERVGHSNISTTLSVYSHVLKEMDKEA 358

Query: 310 MMEI 313
             +I
Sbjct: 359 SDKI 362


>gi|111026169|ref|YP_708452.1| integrase/recombinase [Rhodococcus jostii RHA1]
 gi|110825012|gb|ABH00294.1| probable integrase/recombinase [Rhodococcus jostii RHA1]
          Length = 203

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 68/196 (34%), Gaps = 10/196 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-R 79
           +   L  + G S+ T  +Y    R  L F A       T   I  L      AF+S   R
Sbjct: 12  FTDRLTHQLGASEHTTAAYRDTWRLLLAFTAERLGAAPTALDIADLDAPHSSAFLSHLER 71

Query: 80  TQKIGDRSLKRSLSGIKSFLKY---LKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            +    R+    L+ I S   +    +   +   + +L +   +   S    L   Q   
Sbjct: 72  ERGNSIRTRNMRLAAIHSTFTFAALRQPEHVELIARVLAIPPKRYERSQLTFLTPPQVAA 131

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLRIQGKGD 195
           L     L     T W   R+ A++ L    GLR SE   LT  ++       LR  GKG 
Sbjct: 132 L-----LAAPDRTSWTGRRDHALIQLALTTGLRASEITGLTRGDLHLGAGAHLRCHGKGR 186

Query: 196 KIRIVPLLPSVRKAIL 211
           K R  PL       + 
Sbjct: 187 KDRTTPLTTETIDVLH 202


>gi|295840949|dbj|BAJ06839.1| integron integrase intI [uncultured bacterium]
          Length = 425

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 59/284 (20%), Positives = 102/284 (35%), Gaps = 59/284 (20%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           R  S  T QSY     +F+ F          +Q   +L    I  F+      + +   +
Sbjct: 163 RHYSIRTEQSYTAWLARFIYFNK--------LQDPAKLDQKSISVFLEHLVVRRGVSSST 214

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++L+ +  F +++  +      +    R       LP  L++ +   L          
Sbjct: 215 QSQALNALMFFYRHVLNQPEIEIGDFARSRKP---RRLPVVLSQGEIRDLF--------- 262

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSV 206
            T + +     +  LLYGCGLR+ E + L   +I      ++I+  KG+K R+VPL  ++
Sbjct: 263 -TGFDNGVQLLMAQLLYGCGLRLMECIRLRVFDIDFAYRQIQIRNAKGNKDRVVPLPQNL 321

Query: 207 RK----------------------------AILEYYDLCPFDLNLNIQLPLFR------- 231
                                         A+   Y     +L      P  R       
Sbjct: 322 INELENQVRRVETLHHEDKAAGYGEVYLPGALARKYPNAARELGWQYLFPSSRLSADPRS 381

Query: 232 -GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
             IR   ++    Q+ +++  +  G+      H LRHSFATHLL
Sbjct: 382 GKIRRHHVHENGLQKQLKKAAKKAGIVKKINCHALRHSFATHLL 425


>gi|260170443|ref|ZP_05756855.1| tyrosine type site-specific recombinase [Bacteroides sp. D2]
 gi|315918797|ref|ZP_07915037.1| integrase [Bacteroides sp. D2]
 gi|313692672|gb|EFS29507.1| integrase [Bacteroides sp. D2]
          Length = 395

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 54/325 (16%), Positives = 124/325 (38%), Gaps = 37/325 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYE------CDTRQFLIFLAFYT 54
           +E + +P ++      ER+     L + R L   +  +Y        + R++L+ L    
Sbjct: 95  LEIHTIPTMLLLAGEAERER----LRV-RSLEINSTSTYRQSKISQNNLREYLLTL---- 145

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
             K+       ++      +    + ++     +    + +   +     ++I   + I 
Sbjct: 146 --KMKDIAFTDITEEFGEGYKLFLKAKEYKSGHINHCFTWLNRLIYIAVDQEILRFNPIA 203

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           +++  KK     + ++  +   +++           + +    A ++  +   L   +  
Sbjct: 204 DVKYEKKEPPKLQHISRNELKLIME-----KPMPNTFQELIRRAFIFSAF-TALAYVDLK 257

Query: 175 SLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            L P++I    + +  +RI  K  ++     L  V + IL  Y+        +   P+F 
Sbjct: 258 GLYPRHIGRTAEGKPFIRIHRKKTQVEAYVPLHPVAEQILSLYNT------EDDTKPVFP 311

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
                  N       I ++    G+  + + H  RH+F T LLS G  + SI  ++GH  
Sbjct: 312 LP-----NRDQIWYCITEIGFLAGVKGNMSYHQSRHTFGTLLLSEGIPIESISKMMGHTN 366

Query: 292 LSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +STTQ+Y  V      + M ++ ++
Sbjct: 367 ISTTQVYAKVTDMKISEDMDKLIER 391


>gi|187922252|ref|YP_001893894.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187713446|gb|ACD14670.1| integrase family protein [Burkholderia phytofirmans PsJN]
          Length = 408

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 65/308 (21%), Positives = 124/308 (40%), Gaps = 21/308 (6%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           ++  ++   +++ E   W   +   RGLS  T Q    + R  L +L  +       + +
Sbjct: 102 DSAEDVAIHQVVAEYDAW---MTEVRGLSAGTRQHNRFEARSLLRWLDDHG------KNL 152

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--NLKK 121
             ++  ++ A+I+ R    +  R+    +  ++  L+YL      +    + +   +   
Sbjct: 153 TTVNVADLDAYIASRVAS-MRRRTKGTMVGTLRGVLRYLHSSGRMSIDLSVAIEATSAYA 211

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              +P  +  +    ++D V      +   +  R+ A+L LL   GLR  E L +   ++
Sbjct: 212 MEDIPSTIRPEDIDWVLDIVR----RDCSPLGRRDYALLTLLTTYGLRAGEVLGMCLSDV 267

Query: 182 MDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN- 239
              +  LRIQ  K      +PL+     A+L+Y       +     + L      +PL+ 
Sbjct: 268 DWHRERLRIQHTKTGSCSELPLMRLPADALLDYLCHG-RPVTTQRLIFLRGRAPYQPLSG 326

Query: 240 PGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
                  I +  R  G  LP     H LRHS A  LLS G  ++ I  +LGH    +T +
Sbjct: 327 SAALHSMISRRFRAAGVSLPGKRGPHVLRHSRAASLLSGGVSIKVIGDVLGHRSERSTAV 386

Query: 298 YTNVNSKN 305
           Y  + + +
Sbjct: 387 YLKLATDD 394


>gi|269140380|ref|YP_003297081.1| probable DNA recombinase [Edwardsiella tarda EIB202]
 gi|267986041|gb|ACY85870.1| probable DNA recombinase [Edwardsiella tarda EIB202]
          Length = 179

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 57/142 (40%), Gaps = 1/142 (0%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLC 217
           ++Y+ +  GLR+SE LSL   +I  D  ++ I   K       PLLP   + I  +    
Sbjct: 1   MIYMGFIHGLRVSELLSLRLSDIDLDDQSIYIHRLKNGLSTNHPLLPEEVEVIRVWLHAR 60

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
                      LF    G  L    F + I    +   + + +  H LRH+    L   G
Sbjct: 61  RKIRYAADSEWLFLSRLGTRLTRQQFYKIITDYGKKAEISICSHPHMLRHACGYALADRG 120

Query: 278 GDLRSIQSILGHFRLSTTQIYT 299
            D R IQ  LGH  +  T  YT
Sbjct: 121 IDTRLIQDYLGHRNIRHTVRYT 142


>gi|195952979|ref|YP_002121269.1| integrase family protein [Hydrogenobaculum sp. Y04AAS1]
 gi|195932591|gb|ACG57291.1| integrase family protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 292

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 65/314 (20%), Positives = 126/314 (40%), Gaps = 39/314 (12%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +     W+++L  ER  S  T  SY    + F   ++   E   T + +  ++   +  F
Sbjct: 1   MSIIDAWIKHL--ERTRSAFTRNSYINHIKTFSHVVSKNLE---TEEDLSNIASKNVYQF 55

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN-------ILNMR---NLKKSNS 124
           +       +  +++    S +K ++K+  +R I +E N       I  +R   N+KK   
Sbjct: 56  VDY---ASLSPQTMLAIFSALKHYIKFAYRRNILSEENYNDILKAIEEVREDLNMKKQKY 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
            P+AL+E +   +   V           D R   I  L    G+R+ E   L P N   D
Sbjct: 113 PPKALSEDELEKIFKAVK----------DTRYYKIYNLFLNSGIRLIEFEKLRPDNFFLD 162

Query: 185 QS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
           +S    +R+     K     + P     ++ +      ++ L I   +        +  G
Sbjct: 163 KSNILWIRLDANMTKRNKPRITP-----VISFSKDKTIEIGLQIYEWIENFEYNFRVKRG 217

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTN 300
           V Q Y  +L + L +  S   H+ RH++ T+L++ G     ++  +GH  + TT   Y  
Sbjct: 218 VLQVYTDRLSKRLNIDFSI--HSFRHTYITNLVNYGFSAEIVKEFVGHSDIKTTIDTYYK 275

Query: 301 VNSKNGGDWMMEIY 314
            + K   + + +++
Sbjct: 276 FSQKRAQELVNKLF 289


>gi|320108932|ref|YP_004184522.1| integrase family protein [Terriglobus saanensis SP1PR4]
 gi|319927453|gb|ADV84528.1| integrase family protein [Terriglobus saanensis SP1PR4]
          Length = 373

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 95/256 (37%), Gaps = 19/256 (7%)

Query: 57  KITIQTIRQLSYTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLK----YLKKRKITTES 111
           ++  + +R++    ++ +       + + D +  R  + +   ++              +
Sbjct: 90  ELGRKFVREVDGIAVQHWYENLTGKRGLADNTAVRHFNVMHHMMEKASTIWAPETGIDRN 149

Query: 112 NILNMRNLKKSNSLPRALNEKQALT----LVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
               +   +  ++  R L+E++       L + +L   + +    + R   I+ +    G
Sbjct: 150 PASLIEVRRPDDTRERYLSEEELQRMKTALDERILRKGTKDPNQTNRRMRLIVLIAVSTG 209

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGK--GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           +R +E   L   ++   +  L ++ K    K R VP+   + + I  Y  +   D     
Sbjct: 210 MRSAEIHRLRWTDVRYGERLLAVRAKLKKGKERFVPMTSELAEEIRRYPTVIGQDR---- 265

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
              +F    G        +     L     +      H LRH+FA+  + NGGDL  +  
Sbjct: 266 ---IFPPKGGPASKRQRLEGSFEDLLERANIH-DFWFHDLRHTFASWYMMNGGDLYELAK 321

Query: 286 ILGHFRLSTTQIYTNV 301
           ++GH  +  T+ Y  +
Sbjct: 322 LMGHANIKMTERYAKL 337


>gi|220905619|ref|YP_002480931.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869918|gb|ACL50253.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 398

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 52/284 (18%), Positives = 111/284 (39%), Gaps = 32/284 (11%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           L+    D  +F  +L+ +T+      +  +L+   +     K         + K  L  +
Sbjct: 118 LKGIVTDENRFKNYLSGFTK-----LSPEELTTQMVDTLRLKLLKSGKKAGTTKNVLELL 172

Query: 96  KSFLKYLKKRKITT-ESNI-LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
           +  + +  K+ +   +    L+    K +N     L +++    ++      + +     
Sbjct: 173 RRIINFGVKKGLCAWQDPSRLHFEMPKLNNVKTEMLTKEERARFIEAAKAAPNRKAGQ-- 230

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG------KGDKIRIVPLLPSVR 207
                ++ + Y  G+R +E   L   +I  +   + I G      K ++   +PL P VR
Sbjct: 231 -----LMLMAYYTGMRRNELFGLKWAHIDFEHGFINIVGEKQEGAKSNRDERIPLSPPVR 285

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV-FQRYIRQLRRYLGLPLSTTA-HTL 265
           + + E        +  N    +F G  G+  +  +   + +  ++   GLP      H L
Sbjct: 286 ELLAE--------VGDNGSEYVFPGKDGR--SRMIDMNKQVNAIKAAAGLPKDFRPLHGL 335

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           RH+FA+  +SNG  L  +Q +L H   + TQ Y ++  +   + 
Sbjct: 336 RHTFASVAVSNGVPLSHVQKLLTHKDPTLTQRYAHLEDEALKNA 379


>gi|149374827|ref|ZP_01892600.1| resolvase [Marinobacter algicola DG893]
 gi|149360716|gb|EDM49167.1| resolvase [Marinobacter algicola DG893]
          Length = 246

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 99/230 (43%), Gaps = 24/230 (10%)

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKS--NSLPRALNEKQALTLVDNVLLHTSHETKWID 153
           +  + +  +        +++ R L     +++P+ L + + LTL++              
Sbjct: 26  RPLVSFPIQEVTIDWDRLIDKRPLLLETLDTMPKYLLKPEVLTLLEAE----------TH 75

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQ---STLRIQGKGDKIRIVPLLPSVRKAI 210
             +  IL L++  G R+SE L++T  +  DD      +    K    R      S++++ 
Sbjct: 76  PMHRLILDLMWCTGARVSEVLAITSASFHDDGYDFGVILKTLKQGAGRPS--KRSLQRSP 133

Query: 211 LEYYDLCPFDLNLNIQLPLFRGI-----RGKPLNPGVFQRYIRQLRRYLG--LPLSTTAH 263
             +  +   D    IQ  L+ G      R  P+        I +L   +G   P     H
Sbjct: 134 KRFIPILDRDFQTRIQSYLWMGKFRKDERIFPITRQAVSANIDRLIEQVGGDPPFKIGCH 193

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           T RHSFA HLL +G  L+ +  +LGH  + +T++YTNV + +G  ++  +
Sbjct: 194 TFRHSFAVHLLLHGRPLKFVSQLLGHRSVESTEVYTNVLTFDGAHFLEGV 243


>gi|116871900|ref|YP_848681.1| bacteriophage integrase, putative [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116740778|emb|CAK19898.1| bacteriophage integrase, putative [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 309

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 83/213 (38%), Gaps = 21/213 (9%)

Query: 103 KKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
               + +++    +    +  +   +  + LN+ +   L+  + L       W       
Sbjct: 90  VDEGVLSQNPTRKIVIKGKTPRLKKA--KFLNQFEVQALLKELNLKEDINWDW------- 140

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212
            + L+   GLR SEAL+LTP +    +  + I    D   +             RK  ++
Sbjct: 141 FILLIIKTGLRFSEALALTPSDFDFSKQKIIINKTWDYKMVTGSFQPTKNESSNRKIQID 200

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +     F   + ++ P         +        ++ L     +P + T H+LRH+ A+ 
Sbjct: 201 WQLAMQFSQLIKMKDPDKPIFVKSRVFNSTINNRLKVLCENANIP-TITVHSLRHTHASL 259

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           LL  G  + S+ + LGH  ++TTQ  Y +V  +
Sbjct: 260 LLFAGVSIASVANRLGHSSMTTTQETYLHVIQE 292


>gi|189345769|ref|YP_001942298.1| integrase [Chlorobium limicola DSM 245]
 gi|189339916|gb|ACD89319.1| integrase domain protein SAM domain protein [Chlorobium limicola
           DSM 245]
          Length = 223

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 50/213 (23%), Positives = 91/213 (42%), Gaps = 21/213 (9%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           PE  + + +     W  N+      S+ T ++Y  D ++   FL     E++ I     +
Sbjct: 16  PEFHALKAMPLELEWYANIR-----SEKTRRAYRNDVKELSRFLGITEPEEMRI-----V 65

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--- 123
           +   + A+ +    + +   +++R L+ I S   YL ++     + +L ++    +N   
Sbjct: 66  TRAHLLAWRTDLEQRNLAAATIRRKLASISSLFDYLCEQNAVLHNPVLGVKRPAANNNEG 125

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           + P AL + QA  L+D               R+ AIL  L   GLR  E   L  +++  
Sbjct: 126 TTP-ALGDSQARMLLD-----APPANTLKGKRDRAILATLLYHGLRREELCRLQVKDLQQ 179

Query: 184 DQST--LRIQGKGDKIRIVPLLPSVRKAILEYY 214
                 L I GK +KIR +P+ P  ++ I EY 
Sbjct: 180 RSGVQHLCIHGKREKIRFLPMHPMAQRLIDEYL 212


>gi|85858465|ref|YP_460667.1| integrase family protein [Syntrophus aciditrophicus SB]
 gi|85721556|gb|ABC76499.1| integrase family protein [Syntrophus aciditrophicus SB]
          Length = 421

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 53/273 (19%), Positives = 99/273 (36%), Gaps = 18/273 (6%)

Query: 42  DTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY 101
           D  QF+     +    I    I  L+   ++             R++  + + +      
Sbjct: 138 DVEQFI--YDKWICPLIGKLRINDLTDFHLKKIKKNMEDSGKAVRTIHYAFAIVSQVWNR 195

Query: 102 LKKRKITTES-NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
            +K KI        +++  +  N   R L+ ++A  L+  +        K    +   + 
Sbjct: 196 ARKDKIVQRDCPTRDVKLPRIDNQKKRFLSPQEANDLLAYL--------KNKSRQLYELA 247

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           YL    G R  E   LT + I     ++  +           +    KA+ E       D
Sbjct: 248 YLSLYTGARFGELAGLTWRRINLKDGSIIFRNTKSGKDRTVFMTEGVKALFEAMPEGKAD 307

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL---PLSTTAHTLRHSFATHLLSNG 277
              ++  P  +G R   ++   F R I  L    G+       T H+LRH+ A+ L++NG
Sbjct: 308 ---DLIFPDRKGKRLFSVSA-TFDRAIADLGLNKGVVDPRDKITFHSLRHTHASWLVNNG 363

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +L  ++ ILGH     T  Y++  + +    M
Sbjct: 364 TNLFLVKEILGHADFKMTTRYSHPAADSIRQAM 396


>gi|158317149|ref|YP_001509657.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158112554|gb|ABW14751.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 402

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 65/326 (19%), Positives = 118/326 (36%), Gaps = 65/326 (19%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI--------- 83
             T  +YE   R +L+         +  + + +L+  ++R FI  RRT+           
Sbjct: 88  PNTYVTYEKAVRIYLV-------PGLGKKRLNRLTGADVRQFI--RRTESTCRCCARGVD 138

Query: 84  ---------------GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
                            R ++   + +++ L+   + ++   +    ++       + R 
Sbjct: 139 KARPEGERRCCDRLPSKRQVQVVHAVLRNALQAAVREELIRRNVAKLVQVSTPRYGVDRG 198

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L  +QA  L+D               R  A+L L    G+R  E L L   +I  ++ TL
Sbjct: 199 LTVEQAHQLLDA----------AAGGRLYALLVLALFLGMRRGELLGLQWSDIDSERETL 248

Query: 189 RIQGK---------------GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL---- 229
            ++                  D  R +PLL  V  A+ E+  L   + +      +    
Sbjct: 249 TVRHTLLRVGGELRLCPPKTEDSERTLPLLGLVADALAEHRKLQDAERDAAGDAWVQTGH 308

Query: 230 -FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
            F    G P+ P   +R+   LRR +GL      H LRH+  T LL  G     ++ I G
Sbjct: 309 VFTTKIGTPIEPDNLRRFWMPLRRAVGLD-GVVFHGLRHTCVTLLLDLGVPPHIVRDIAG 367

Query: 289 HFRLSTTQ-IYTNVNSKNGGDWMMEI 313
           H  +  T  IY + +       + ++
Sbjct: 368 HSAIEVTMTIYAHASMGEKRRALGKL 393


>gi|330815343|ref|YP_004359048.1| phage integrase [Burkholderia gladioli BSR3]
 gi|327367736|gb|AEA59092.1| phage integrase [Burkholderia gladioli BSR3]
          Length = 347

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 50/265 (18%), Positives = 101/265 (38%), Gaps = 12/265 (4%)

Query: 49  FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT 108
           F A + E      ++  +S   +  +  +R      + +++  L+ +    +   +    
Sbjct: 86  FSAKHLEAFFGKYSMAAVSAELVAKYRDERLAAGKSNNTVRLELAMLGHLFRMAIQEWGI 145

Query: 109 --TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
             T + + N+R         R L+  +   L      H++    W       I+ L    
Sbjct: 146 GLTFNPVANVRKPSPGAGRDRRLSRDEQQRLFAAADAHSNPMLGW-------IVRLAVET 198

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           G+R SE   L    +  D+  + ++  K    R+VPL     + +    D     ++ ++
Sbjct: 199 GMRSSEITGLCRSQVDLDRRVVTLRDTKNGSSRMVPLTREAAEVLRAALDNPIRPIDTDL 258

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
                 G  GK   P VFQ+    + R LG+      H LRH   + L+  G   + + S
Sbjct: 259 VFFGEPGRDGKR-KPYVFQKLWAGIVRDLGMA-DLHFHDLRHEAVSRLVEAGLSDQEVAS 316

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWM 310
           I GH  +   + YT++ +++    +
Sbjct: 317 ISGHKSMQMLKRYTHLRAEDLVQRL 341


>gi|188526765|gb|ACD62264.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 48/89 (53%)

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +     F  + +   P    +R   +    FQR  ++     G+    T HTLRHSFAT 
Sbjct: 70  WPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATA 129

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 130 LLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|89147424|gb|ABD62572.1| integrase [uncultured bacterium]
          Length = 163

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 38/89 (42%), Positives = 49/89 (55%)

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +     F        P     R   L+P   QR +R   R+ G+    T HTLRHSFATH
Sbjct: 74  WAWQYVFPAERLSVDPRTGVTRRHHLDPRSIQRALRDALRFAGIAKHATPHTLRHSFATH 133

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 134 LLDNGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|319937079|ref|ZP_08011488.1| hypothetical protein HMPREF9488_02322 [Coprobacillus sp. 29_1]
 gi|319807857|gb|EFW04442.1| hypothetical protein HMPREF9488_02322 [Coprobacillus sp. 29_1]
          Length = 383

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 49/290 (16%), Positives = 111/290 (38%), Gaps = 26/290 (8%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
              Y ++ I  + +  L Y  ++ F +K  ++K    +LK          KY  +     
Sbjct: 95  HEMYVKDTIGNENMGSLKYMNLQQFFNKM-SEKYNPPTLKNIKKLFAVTFKYALRVGYIR 153

Query: 110 ESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN-------SAIL 160
           E+ I  ++  K      +   +   + L+ + + L        +   +N        A+ 
Sbjct: 154 ENPIPYIQIPKLQNERRVKVEIISDENLSKIIDALQTVKRTNPYSSGKNAEFTFKSYAMA 213

Query: 161 YLL-YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
            ++    GLRISE L+L  Q+   +   + ++ K +   +          +         
Sbjct: 214 LIIGRYTGLRISETLALKRQDFDLENCCMTVRRKIEYSGLKAKDIHTTHQLKSAKSKGTV 273

Query: 220 DLNLNIQLPLFRGIRGKP------------LNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +++  +   L +     P            + P      +R++ + L +      H LRH
Sbjct: 274 EISKLLCSYLKKWFEINPFEFVICDGKGNFIKPETLNHRLREVCKELNINFH--YHMLRH 331

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQ 316
           ++AT L+ +G +   ++ ++ H  +STT  IYT+  +++    +  +Y +
Sbjct: 332 TYATELVMSGVNPVVVKDLMRHSDISTTWSIYTHPQNEDQRKALDNLYME 381


>gi|218262162|ref|ZP_03476721.1| hypothetical protein PRABACTJOHN_02394 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223568|gb|EEC96218.1| hypothetical protein PRABACTJOHN_02394 [Parabacteroides johnsonii
           DSM 18315]
          Length = 406

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 54/291 (18%), Positives = 120/291 (41%), Gaps = 22/291 (7%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLK 89
            + +T++ Y+   +  +  +    + K+    +R+++   +R F    +T+K     ++ 
Sbjct: 129 YADITVRRYDNCLKYLMELVRR--DYKVDDMLLREVNGELVRKFDLYLKTEKHCAQNTVI 186

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R +   K  +      +  T++    ++  +   +  + L++ +      N +       
Sbjct: 187 RYMKCFKKVINLAIANEWLTKNPFAGIKFHEVEVN-KQFLSQAEI-----NRIWQKEFRI 240

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRIVPLLP--SV 206
           + ++      ++ +Y  GL   +  +L P++I +D    L I    +K   +  +P  S+
Sbjct: 241 ERLELVRDVFIFCVY-TGLAFIDVYNLRPEHISEDSNGNLWIVKPREKTNNLCNIPLLSI 299

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            K ILE Y   P+ ++    LP+    +           Y++++    G+  + T HT R
Sbjct: 300 PKQILEKYKDNPYCMDKGTLLPVPCNQKM--------NSYLKEIADLCGIKKNLTTHTAR 351

Query: 267 HSFA-THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           HSFA    L+N   L ++  +LGH     TQ Y  V  +     M  +  +
Sbjct: 352 HSFASVIALANNVSLPNVAKMLGHSSTRMTQHYAKVLDQTILRDMQIVESK 402


>gi|154000967|gb|ABS57051.1| integrase [uncultured bacterium]
          Length = 158

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 50/94 (53%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 65  RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRVFKRAVEQAGITKPATPHTLRH 124

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 125 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|294663047|ref|YP_003566017.1| site-specific recombinase, phage integrase family [Bacillus
           megaterium QM B1551]
 gi|294352012|gb|ADE72337.1| site-specific recombinase, phage integrase family [Bacillus
           megaterium QM B1551]
          Length = 382

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 69/317 (21%), Positives = 111/317 (35%), Gaps = 36/317 (11%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLI-------FLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +++   R   + T   Y     QF         FL    +  I     + L    IR + 
Sbjct: 68  KHIRKNRERKENTKIEYLRILLQFYQYAIESESFLRQDVDHYIEETIFKNLRPWHIRNYQ 127

Query: 76  SKRRT-------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
               T       +     +L   ++ +KSF+K+L + K                  L  +
Sbjct: 128 MYLSTALLGKGGKPYSPATLDAKMTILKSFMKWLHETKYIQY--------PLHKEILSTS 179

Query: 129 LNEKQA-LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD--- 184
           L+E++     +    +    +       N  +L +L   GLR+ E  + +  ++  D   
Sbjct: 180 LSEQEIPNRDLYYHEVKQILDYYKDHPINHGLLTMLAMTGLRVQEIANASWGDVYLDSLS 239

Query: 185 -QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPG 241
               LR  GKG K     L PS+ + IL +         LN + Q PLF    G   +  
Sbjct: 240 GHYRLRGVGKGGKKFDKLLHPSLYERILAFRARRHVSTALNTSDQGPLFPSKDGGYYHYK 299

Query: 242 VFQRYIRQLRRYLGLPL------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
               YI ++     LP         T H  RH +A +    G D+  IQ  LGH    TT
Sbjct: 300 NLSNYIVRIIERTELPFVKERADRITPHYFRHFYAIYSRQQGADIFLIQKELGHSDRKTT 359

Query: 296 QIYT-NVNSKNGGDWMM 311
           + Y   V  +     +M
Sbjct: 360 ERYLEKVLQREQEIGLM 376


>gi|228941041|ref|ZP_04103598.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228973972|ref|ZP_04134546.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228980561|ref|ZP_04140870.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis Bt407]
 gi|228779122|gb|EEM27380.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis Bt407]
 gi|228785698|gb|EEM33703.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228818584|gb|EEM64652.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar berliner ATCC 10792]
          Length = 322

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 63/312 (20%), Positives = 116/312 (37%), Gaps = 22/312 (7%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           VS E     +++L   + + G +  TLQ Y  D R  L  +  + E K  I     L+  
Sbjct: 17  VSQENKNLVKDFLIEKKSQ-GKAASTLQQYSWDLRIILFLIHEHFENKKLI----DLTRK 71

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRN-LKKSNSLP 126
           +IR      +   + +  +   +S ++S L++           +    +R   K      
Sbjct: 72  DIRNLSIIFQEMGMSNARVNGLMSALRSALEFCADDDDYDYEFNVGSRVRGLPKNPIRDI 131

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             + E Q   L+D +L              +  L L Y    R +E   +  + + +   
Sbjct: 132 TFITEDQINWLIDELLEQEK-------YMLATYLALSYYSAARKNEVYQVQKEGLTEQYY 184

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           T  ++GK  K   +     V++ I  Y +    D   ++ + +++    K LN  VF  +
Sbjct: 185 TNVVRGKRGKKFRLYYNHRVQQCIRLYINQRGKDTIPDLFVRVYKNGERKRLNKSVFNYW 244

Query: 247 IRQLRRYL----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                + L    G       H  RHS   +L   G  L  ++S+  H  +STT+ Y    
Sbjct: 245 CEIFAKMLNEKEGKGFKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTESYLK-- 302

Query: 303 SKNGGDWMMEIY 314
                + + EI+
Sbjct: 303 -DRSEEDIAEIF 313


>gi|215401172|ref|YP_002332477.1| integrase [Staphylococcus phage phiSauS-IPLA88]
 gi|215260399|gb|ACJ64530.1| gp1 [Staphylococcus phage phiSauS-IPLA88]
          Length = 354

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 100/284 (35%), Gaps = 15/284 (5%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T ++Y         F  F   E I+   +  L+ T  R FI           ++++  + 
Sbjct: 73  TDKAYANFKNAINQFKTFLEVENISNLVLSDLNTTFYRKFIKW-YGSNHSTETVRKIHNC 131

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +K  +    +  +  +     +       ++P    E++ +++ D + L        I +
Sbjct: 132 LKQPIDDAIQEGLIHKDPTYKVV---VKGTIPAQREEEKFMSIKDFINLKEYVSNTPIQS 188

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK--IRIVPLLPSVRKAILE 212
                +Y+L   G R  E   L   ++     T+ + G   +   R V +  +  K +  
Sbjct: 189 --YLFIYILIITGGRFGEVQRLCTSDLDYKNCTIHLPGTKTETSDRTVDIPQNDMKILKN 246

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                P  L   +            +      + +++      +    T H++RH+  ++
Sbjct: 247 TLAEMPISLTTQLF-----NTGTSLITHNAVTKVMQRYCLEKRIGKY-TLHSIRHTHCSY 300

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYD 315
           LL N   +  I   LGH  + TT  +Y+++  +       +  D
Sbjct: 301 LLHNDVSIYYISKRLGHKSIKTTMDVYSHLLDEIEQKEKEKALD 344


>gi|91224611|ref|ZP_01259872.1| Site-specific recombinase XerD-like protein [Vibrio alginolyticus
           12G01]
 gi|91190499|gb|EAS76767.1| Site-specific recombinase XerD-like protein [Vibrio alginolyticus
           12G01]
          Length = 396

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 52/292 (17%), Positives = 121/292 (41%), Gaps = 27/292 (9%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS------KRRTQKIGDRSLKR 90
           +S+  D  +F   +  +        +  QL  + I++ ++        R +K+   ++ R
Sbjct: 121 KSWRHDIARFNHCVEIWDI------SYDQLRVSHIQSMVAGLIDKVHLRGKKLSRSTINR 174

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L  +K  +  + + + +  +    ++   ++ +  R L+ ++   + + +      +  
Sbjct: 175 VLCLLK-LMGRMIEEEYSIPNVAARVKLFPETGARERWLSPQEIKRIFEEL-----RKPD 228

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
           +   R+  I+ LL+  G R     +    NI  +   +RI  +  K      +    +AI
Sbjct: 229 YCPIRSRFII-LLFMLGCRERSLRAARWPNIDLENGVMRIPREDSKNGFQHQIQLTPQAI 287

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHS 268
            E+  L    L       +F G + K  +    +    ++++ L L  P     HT RHS
Sbjct: 288 QEFRFL--LRLKKKGNPYVFPGQKEKS-HISQPRHLFNKIKKELMLKEPEQIVFHTARHS 344

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGDWMMEIYDQT 317
           +A+ L+S G D+  ++ +LGH  +S+T  Y      + +     ++++ D+ 
Sbjct: 345 YASSLISAGVDVGVLKQLLGHKSISSTMRYARAGNESLRQSSQVLIQLIDEA 396


>gi|228951165|ref|ZP_04113280.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|228808462|gb|EEM54966.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
          Length = 322

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 63/312 (20%), Positives = 115/312 (36%), Gaps = 22/312 (7%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           VS E     +++L   + + G +  TLQ Y  D R  L  +  + E K     +  L+  
Sbjct: 17  VSQENKNLVKDFLIEKKAQ-GKAASTLQQYNWDLRIILFLIHQHFENK----NLIDLTRK 71

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT--TESNILNMRN-LKKSNSLP 126
           +IR      +   + +  +   +S ++S L++           +    +R   K      
Sbjct: 72  DIRNLSIIFQEMGMSNARVNGLISALRSALEFCADDDDYNYEFNVGSRVRGLPKNPIREI 131

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             + E Q   L+D +L              +  L L Y    R +E   +  + + +   
Sbjct: 132 TFITEDQINWLIDELLEKEK-------YMLATYLALSYYSAARKNEVYQVQKEGLTEQYY 184

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           T  ++GK  K   +     V+K I  Y      D   ++ + +++    K LN  VF  +
Sbjct: 185 TNVVRGKRGKKFRLYYNHRVQKCIRLYIKQRGKDTIPDLFVRVYKNGERKRLNKSVFNYW 244

Query: 247 IRQLRRYL----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                + L    G       H  RHS   +L   G  L  ++S+  H  +STT+ Y    
Sbjct: 245 CDIFAKMLNEKEGKEFKMNPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTESYLK-- 302

Query: 303 SKNGGDWMMEIY 314
                + + EI+
Sbjct: 303 -DRSEEDIAEIF 313


>gi|319938811|ref|ZP_08013175.1| phage integrase family Site-specific recombinase [Streptococcus
           anginosus 1_2_62CV]
 gi|319811861|gb|EFW08127.1| phage integrase family Site-specific recombinase [Streptococcus
           anginosus 1_2_62CV]
          Length = 385

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 53/280 (18%), Positives = 94/280 (33%), Gaps = 38/280 (13%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           I +++    + FI+    +    R++K+  S       +  K K+ T++ +      K+ 
Sbjct: 110 ISKITPWHCQDFIT---EKGQTFRNIKQVKSYTSQVFDFALKMKLITDNPMKQTILPKRE 166

Query: 123 NSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
                   + ++    +  +     ++       N A+  LL   GLR  E  SL   +I
Sbjct: 167 RKKSDNFFSVEELHEFLAIIKAEEPYK-------NYALFRLLAYSGLRKGELYSLRWSDI 219

Query: 182 MDDQSTL-------RIQGK--------GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
             D   L       RI+GK           IR +PL       + E+      +      
Sbjct: 220 DFDNQLLSISKNLGRIKGKAVEKSTKNRFSIRQIPLDTETVSILKEWKQKSRREKGQLSV 279

Query: 227 LPLFRGIRGK----------PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
            PL                 PL        ++++ R  GL    T H  RH+ AT ++  
Sbjct: 280 TPLIGSDYMFTFVDRDGKIEPLYQDYINSVLKRIIRKHGL-KKITPHGFRHTHATLMIEV 338

Query: 277 GGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYD 315
           G D  +    LGH     T   Y++         + +  D
Sbjct: 339 GVDPVNAAKRLGHASSQMTLDTYSHSTVAGEKKAITKFVD 378


>gi|304438155|ref|ZP_07398097.1| phage integrase family site-specific recombinase [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304368762|gb|EFM22445.1| phage integrase family site-specific recombinase [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 368

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 56/319 (17%), Positives = 111/319 (34%), Gaps = 42/319 (13%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +LQ       L + TL +Y     ++++ +     +      I  +    I+  +S  
Sbjct: 63  ETFLQTKREVDKLEESTLTTYRRFLDKYILSIIPPNMK------INDVKPALIKRVLS-- 114

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q  GDR+ +   + + S  K  K  ++   + +  +R  K + +    +  +    L+
Sbjct: 115 --QITGDRTRQAVYTLLHSIFKAAKFEQLVENNPMEFIRKPKHTATTTGIVTPEIYHALM 172

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK-- 196
             V                 +    +G GLR  E ++L   +   D + + +    ++  
Sbjct: 173 SAVSGSQIEH----------LFSFAWGTGLRRGEIVALHWSDFDADAAFIHVSKARNRGS 222

Query: 197 ------------IRIVPLLPSVRKAILEYYDLCPFDL-----NLNIQLPLFRGIR--GKP 237
                       +R V L P+  + +L +       L      L     +FR ++   +P
Sbjct: 223 KEYEGAPKTAYSVRTVTLSPAAVQNLLAWKKKLAEQLLSQGIRLTKDDYIFRSLKDVRQP 282

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQ 296
           +           L+  L LP +   H+ RH+ AT L       + IQ  LGH   S T  
Sbjct: 283 MTLTALTHIFADLKEKLNLPKNLRFHSFRHTHATMLAEQEISAKKIQLRLGHSSASFTMD 342

Query: 297 IYTNVNSKNGGDWMMEIYD 315
            Y +   +       +I  
Sbjct: 343 RYVHNTEQMQEGITEKIVK 361


>gi|154489817|ref|ZP_02030078.1| hypothetical protein PARMER_00045 [Parabacteroides merdae ATCC
           43184]
 gi|154089259|gb|EDN88303.1| hypothetical protein PARMER_00045 [Parabacteroides merdae ATCC
           43184]
          Length = 407

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 54/300 (18%), Positives = 114/300 (38%), Gaps = 25/300 (8%)

Query: 20  NWLQNLE-IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           N+L   +      +K  ++  +    +F  FL               ++   +  F++  
Sbjct: 122 NFLDYFQAYINSYTKKDIRMVQIALSRFKDFLKEKYPMNECSIKPELITKEMMEQFVAYL 181

Query: 79  RTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           +++ +G   +S+ +     K  ++Y  +  +  +    ++     S  L      K  L+
Sbjct: 182 QSRSVGEGAKSIYQRF---KKVIRYAIEHDVMLKDPCKDVTCKVDSQML-----RKDVLS 233

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--GKG 194
           L +   L   H            ++ LY CGLR  +   LT +N+      L+ +     
Sbjct: 234 LEEIQKLMACHYDNENPIVRRTFIFCLY-CGLRFCDVKDLTYRNVDYANRLLKFEQSKTK 292

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
                  ++  +   +L      P D N L   LP +              + +++  + 
Sbjct: 293 GHSASSGVVIPLNDGLLSIIGEAPADKNCLIFDLPTYESCC----------KSVKRWVKR 342

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+    + H  RHSFA ++L+NG +++++ S+LGH  L  T+ YT    K   + +  +
Sbjct: 343 AGIDKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLKEEAINSL 402


>gi|188526769|gb|ACD62266.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 35/100 (35%), Positives = 51/100 (51%)

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           L     +A   +     F  + +   P    +R   +    FQR  ++     G+    T
Sbjct: 59  LEWKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPAT 118

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 119 PHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|260171160|ref|ZP_05757572.1| transposase [Bacteroides sp. D2]
 gi|315919477|ref|ZP_07915717.1| transposase [Bacteroides sp. D2]
 gi|313693352|gb|EFS30187.1| transposase [Bacteroides sp. D2]
          Length = 410

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 50/295 (16%), Positives = 105/295 (35%), Gaps = 34/295 (11%)

Query: 34  LTLQSYE------CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
            T+ +Y           +F+   + Y    I I  I  +  T+   ++  R   K G  +
Sbjct: 126 KTIATYRKYEVTRRHLAEFIQ--SKYNISDIAINEITPMFITDFELYL--RTACKCGYNT 181

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             + +   K  +   +   I       N + ++        L E +   ++   ++    
Sbjct: 182 TAKFMQFFKRIILIARNNGILVGDPFANYK-IRLEKVDRGYLTEDEIKIILKKKMVS--- 237

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKGDKIRIVPLL 203
             +  + R+  I       GL   +  +LT  N       +   +  + K +    VPLL
Sbjct: 238 -ERLENVRDLFIFSCF--TGLAYIDVANLTQDNIRKSFDGNLWIITKRQKTNTDVNVPLL 294

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              +  + +Y            +  L  G     ++      Y++++    G+  + T H
Sbjct: 295 DIPKMILKKY------------KGKLPNGKILPVISNQKLNAYLKEIADVCGIKKNLTFH 342

Query: 264 TLRHSF-ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
             RH+F  T  L+ G  + ++  +LGH  + TTQIY  + +    + M  +  + 
Sbjct: 343 LARHTFATTTTLAKGVPVETVSKMLGHTNIETTQIYARITNNKISNDMQGLDKKF 397


>gi|59712648|ref|YP_205424.1| DNA integration/recombination/invertion protein [Vibrio fischeri
           ES114]
 gi|59480749|gb|AAW86536.1| DNA integration/recombination/invertion protein [Vibrio fischeri
           ES114]
          Length = 325

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 95/253 (37%), Gaps = 38/253 (15%)

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKR---SLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           R+++ ++   +  + R + +  ++       L+ +  F +  +  +    + +  +R LK
Sbjct: 97  REITASDFSKY-RQLRIETVSIKTANNDQTYLNAL--FNELKRLGEWNYNNPLAELRALK 153

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                   L  ++   + D +        K  +     I  +    G R  EA SLT   
Sbjct: 154 YKQPEMGFLTSEEITLVFDEL-------EKCRNFDAYLISKICISTGCRWGEAESLTSTQ 206

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           +   + T     KG+K R VP+   + + +                       +   L  
Sbjct: 207 LTPHRITFT-HTKGNKHRTVPISKELYEEL---------------------PKKNGRLFS 244

Query: 241 GVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
               +  +      G  LP   + H LRH+FA+H + NGG++  +Q ILGH  ++ T  Y
Sbjct: 245 NCI-KSFKMAVNRTGVQLPKGQSTHVLRHTFASHFMMNGGNILVLQQILGHASITDTMKY 303

Query: 299 TNVNSKNGGDWMM 311
            + +  +  D + 
Sbjct: 304 AHFSPAHLEDAIK 316


>gi|325522051|gb|EGD00723.1| phage integrase family protein [Burkholderia sp. TJI49]
          Length = 311

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 62/311 (19%), Positives = 115/311 (36%), Gaps = 35/311 (11%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           LS LT      D   +  FL   T  +  +   R     E R F     T  +  RS   
Sbjct: 4   LSSLT----TDDAIAYRSFLRRPTPRERWVGPSRPRQSVEWRPF-----TGPLSARSAAY 54

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS----LPRALNEKQALTL--VDNVLLH 144
           +L+ + +  ++L +++    +    ++   +       + R  +E + L +  + + L  
Sbjct: 55  ALNVLSALFRWLVEQRYVLANPFAGVKIKSQVQRAGLDVSRGFSEGEWLLIRTLADGLEW 114

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGDKIRIVP 201
           +   ++    R   +L   Y  GLR SE +  T  +I  D+     L + GKG K+  V 
Sbjct: 115 SYGWSEAAAQRLRFLLDFGYATGLRASELVGATLGDIRRDEHGDHWLHVLGKGGKLGKVA 174

Query: 202 LLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLN------PGVFQRYIRQLRR 252
           L P  R A+ +        +     N   PL   +     +        V +R+   +  
Sbjct: 175 LPPLARTALDQSLVQRGLPVTPTRWNPATPLVASLEEDRAHIESTRLWRVLRRFFVLVAD 234

Query: 253 YLGLPLSTT--------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            +      T         H +RH+ A+H L+ G +L  ++  L H  +STT  Y + +  
Sbjct: 235 TIQNERPATAEKLRRASPHWMRHTHASHALARGAELIMVRDNLRHSSISTTSTYLHSDEV 294

Query: 305 NGGDWMMEIYD 315
                  + + 
Sbjct: 295 QRARQFDQAFR 305


>gi|258539251|ref|YP_003173750.1| phage-related integrase [Lactobacillus rhamnosus Lc 705]
 gi|257150927|emb|CAR89899.1| Phage-related integrase [Lactobacillus rhamnosus Lc 705]
          Length = 382

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 102/279 (36%), Gaps = 32/279 (11%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
              +T+  +    I++ +S+ R         K     +K  L +  K +   ++    + 
Sbjct: 104 FGSKTLTAIKTGSIQSAVSQWRETTTKA--YKERFIYLKKILSFAVKMQYIEKNPADGVE 161

Query: 118 NLKK--SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
             +   S   P   + KQ    +  +  +   E          +  L+   G+R  E  +
Sbjct: 162 LPRGVGSGKSPVYWDNKQVARFLTCIDPNNDPEK-------YTMFLLMVSTGIRREELCA 214

Query: 176 LTPQNIMDDQSTLRIQG----------------KGDKIRIVPLLPSVRKAILEYYDL--C 217
           L   ++    STL I                      +R +PL P V   + ++  L   
Sbjct: 215 LNVSDVNFKTSTLSINKAYATGLNGKESIKGTKSTAGMRTIPLTPKVTIQLKKWIALLDA 274

Query: 218 PFDLNLNIQLPLFRGIRGK--PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
              +++    PLF   +     L      ++++ +     L    T H LR SF T+++ 
Sbjct: 275 SKIISIRDDRPLFPSPQHFEKRLGINRPNKWLKDIIEANHLSPRITLHGLRKSFVTNMIR 334

Query: 276 NGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           +G D+ ++Q + GH     T +IY  +N  +  + + ++
Sbjct: 335 SGVDVSTVQRLAGHSTPDVTLRIYAGMNQSDAREGIDKL 373


>gi|212693707|ref|ZP_03301835.1| hypothetical protein BACDOR_03227 [Bacteroides dorei DSM 17855]
 gi|237707923|ref|ZP_04538404.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|237723463|ref|ZP_04553944.1| tyrosine type site-specific recombinase [Bacteroides sp. D4]
 gi|265758458|ref|ZP_06090985.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
 gi|212663728|gb|EEB24302.1| hypothetical protein BACDOR_03227 [Bacteroides dorei DSM 17855]
 gi|229438167|gb|EEO48244.1| tyrosine type site-specific recombinase [Bacteroides dorei
           5_1_36/D4]
 gi|229458059|gb|EEO63780.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|263233416|gb|EEZ19072.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
          Length = 386

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 94/251 (37%), Gaps = 12/251 (4%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKK 121
              L+Y  +  F            ++ + +  +KSF+     +     +N    R  +K 
Sbjct: 143 FEDLTYNFVTDFEKFLYDSDYQTNTVAKHMKHLKSFVNAAINKGYIDPNNYAFRRYKIKM 202

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
                  L  ++   L +  L+        ++    A L+  Y  GLR S+ +SL  +NI
Sbjct: 203 KEGKHVFLLPEEMKKLEEVSLIG---RNSCLEHTLDAFLFCCY-TGLRYSDFVSLNEKNI 258

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
           +     L +     K      LP    ++L              +   F  I+    N  
Sbjct: 259 VKMDGKLWLIFDSVKTGAEVKLPL---SLLFEGKALTLLQKYQGKWSSFFSIK----NNS 311

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              + + ++ +   +    + H+ RH+ AT L+  G ++ ++Q +LGH  L+TTQIY  V
Sbjct: 312 SVNKELIRIGKLARINKHFSFHSARHTNATLLIYKGANITTVQKLLGHKNLATTQIYGEV 371

Query: 302 NSKNGGDWMME 312
                   + +
Sbjct: 372 MGSTIVRDLKK 382


>gi|297619031|ref|YP_003707136.1| integrase family protein [Methanococcus voltae A3]
 gi|297378008|gb|ADI36163.1| integrase family protein [Methanococcus voltae A3]
          Length = 317

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 59/309 (19%), Positives = 119/309 (38%), Gaps = 28/309 (9%)

Query: 19  QNWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEE-KITIQTIRQLSYTEIRAF 74
           + +++  + ER   G++K TLQ    D  +  +FL +     K   + + +L + +   +
Sbjct: 19  EEYVEKYKYERELDGIAKSTLQ---IDVTKLKVFLTYCNSIIKRRPENLTKLDFGKFFMY 75

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLK---YLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           ++  R  +I   +  R  + +  F K   Y    +  TE                    +
Sbjct: 76  LANER--RIAKNTEIRYYNLLVMFYKVMNYDNFEEFETECKERKRFKKFDKKHYDYVTTQ 133

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
                 +D +     ++  +   R++ +L  L+  G R+SE L+   ++       + I 
Sbjct: 134 D-----MDLIFQKLYNKNNYTQDRDAVLLRTLWDTGCRVSEILNSKLKDYDGKNGVIVIT 188

Query: 192 G-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
             K    R V L    ++A+     +   + N N    LF+ + G+ +N     R     
Sbjct: 189 KSKNYTERRVILANDTKEALN---YIITKNRNKNDNDYLFQKLNGEQINRNAIYRVFNAC 245

Query: 251 RR------YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            +       L        H++RH    +LL+ G +L  +   +GH R+ TT IY + N +
Sbjct: 246 VKELKAEGKLAKNRRIVLHSIRHGCCVNLLTKGVNLDEVSRYMGHNRVETTMIYAH-NRE 304

Query: 305 NGGDWMMEI 313
              + +  I
Sbjct: 305 RTNESLNNI 313


>gi|228949648|ref|ZP_04111884.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228810042|gb|EEM56427.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 381

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 60/370 (16%), Positives = 126/370 (34%), Gaps = 80/370 (21%)

Query: 16  KERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +  Q  L  L  +     ++ TL+SY    + F  FL    +EK+     R++   ++ +
Sbjct: 31  EPIQPVLHYLRFKDNSNAARNTLRSYCFHLKLFFEFLE---QEKL---DYREIGIDQMAS 84

Query: 74  FISKRRT--------------QKIGDRSLKRSLSGIKSFLKYLKKRK------------- 106
           F+   +                    R++   L+ +  F  YL + +             
Sbjct: 85  FMGWLQNPYGNNKVVSISISPLPRKPRTINTVLATVTGFYDYLMRHEDYSIQLSERLKKQ 144

Query: 107 -------------ITTESN--ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
                           +      ++   K     P+ ++++Q   L+ +           
Sbjct: 145 ITGSRRNFKDFLYHINKDKKFTAHILKAKVPKEKPKVISKEQVTKLIFSC---------- 194

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI-----------RIV 200
            + R+  ++ LL+   +RI EALSL  ++   D   + I  +G+             RI+
Sbjct: 195 SNIRDRFLIQLLWESSMRIGEALSLWLEDFKVDARKIHICDRGELENFAEIKTVYSPRII 254

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG--IRGKPLNPGVFQRYIRQLRRYLGLPL 258
            +   +     EY      D      + +      + +PL          +L++   +  
Sbjct: 255 DVSEELMDLYFEYIAEIHTDEVDTNHVFIKLSGENKHRPLEYTDIVSLFNRLKQKTAI-- 312

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQT 317
             T H LRH+  T L   G     +    GH  + TT Q+Y + +     D + + +++ 
Sbjct: 313 HVTPHMLRHTSLTELRKAGWKDEHLMKRAGHAHIQTTIQMYVHPSD----DDLRKDWERA 368

Query: 318 HPSITQKDKK 327
              +    +K
Sbjct: 369 QERMKINSQK 378


>gi|154000926|gb|ABS57031.1| integrase [uncultured bacterium]
 gi|154000971|gb|ABS57053.1| integrase [uncultured bacterium]
          Length = 158

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 50/94 (53%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 65  RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 124

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 125 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|89147474|gb|ABD62597.1| integrase [uncultured bacterium]
          Length = 163

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 34/93 (36%), Positives = 50/93 (53%)

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           A  E+     F  +     P    IR   ++    Q+ +++     G+  + + HT RHS
Sbjct: 70  ADKEWRWQYVFPASKRSTDPRSGVIRRHHIDESSLQKAVKRAVILAGVEKNVSCHTFRHS 129

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           FATHLL  G D+R+IQ +LGH  +STT IYT+V
Sbjct: 130 FATHLLEAGRDIRTIQELLGHKDVSTTMIYTHV 162


>gi|293410219|ref|ZP_06653795.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291470687|gb|EFF13171.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 333

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 91/233 (39%), Gaps = 29/233 (12%)

Query: 80  TQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            +K+ + ++ R  S + + F +  +  + + E+ +  +R  ++       L   +   L+
Sbjct: 121 KKKLSEATVNREQSYLHAVFAELKRLGEWSGENPLTGIRKFREEEKELAFLYVDEIERLL 180

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            +     + +          ++ +    G R SEA  L    ++  + T  ++ KG K R
Sbjct: 181 ISCDESRNKDLG-------VVVRIGLATGARWSEAEGLKQSQVLPCRITF-VKTKGKKNR 232

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            VP+ P ++  +               +  LF            F   I+  R  + LP 
Sbjct: 233 TVPISPQLQAML------------PKKRGALFSPCYE------AFDAAIK--RAKIELPD 272

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               H LRH+FA+H +  GG++  +Q ILGH  +  T  Y +    +    + 
Sbjct: 273 GQLTHVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAHFAPGHLEAAVE 325


>gi|282861525|ref|ZP_06270589.1| integrase family protein [Streptomyces sp. ACTE]
 gi|282563341|gb|EFB68879.1| integrase family protein [Streptomyces sp. ACTE]
          Length = 435

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 64/329 (19%), Positives = 113/329 (34%), Gaps = 67/329 (20%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL+ + +   L + T   Y     Q LI         +  + + +L+  ++R ++++ RT
Sbjct: 86  WLEAVAVH-QLRENTHTRYTTCVNQHLI-------PGLGKKKLAKLTAKDVRTWLNQLRT 137

Query: 81  --------------------------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
                                     +++   +L    S +KS L++  + +  T +   
Sbjct: 138 TCQCSVRAIDAHRDQPRCCAAGTCCSKRLSPLTLAYIHSVLKSALEHAVREEEITRNVAR 197

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           N+R           L   +A   +  V           + R  A+  L    GLR  E L
Sbjct: 198 NVRTGTPRPRRFEPLTADEARQFLAAVR----------NDRLFALYELALRAGLRKGELL 247

Query: 175 SLTPQNIMDDQSTLRIQ----------------GKGDKIRIVPLLPSVRKAILEYYDLCP 218
            L  +++     T  I+                      R + L      +  E+  +  
Sbjct: 248 GLQWKDLDLHNGTASIRRTLQRTQTGGLTALPTKTRASERRIALPSECIHSFKEHRAVQE 307

Query: 219 FDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            +     +       +FR   G P++P    R    L    GL      H LRHS AT L
Sbjct: 308 GERKAAAEGWKDNGLVFRTSAGGPIDPANLNRSFHTLLERAGL-RRIRFHDLRHSTATLL 366

Query: 274 LSNGGDLRSIQSILGHFRLSTTQ-IYTNV 301
           L  G +L  I+ +LGH  +  T  +Y +V
Sbjct: 367 LEQGVELVVIKELLGHAHIGVTATVYAHV 395


>gi|229165299|ref|ZP_04293086.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus AH621]
 gi|228618124|gb|EEK75162.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus AH621]
          Length = 374

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 47/313 (15%), Positives = 110/313 (35%), Gaps = 38/313 (12%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           +  L +  Q WL+N   +R + + T  +Y+      +I +       +    ++ L    
Sbjct: 62  NLTLSEYLQEWLENTAKQR-VRETTFTNYKRAVNNRIIPV-------LGSHKLKDLKPLH 113

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
            + F+     +++  + ++     +K  L+   K ++  ++   ++   +    +    +
Sbjct: 114 GQRFVKSLIDEELSPKYIEYIFIVLKGALEDAVKWELLYKNPFEHVEIPRPRKVVNNTWS 173

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            ++  T +           K+ +     +  L    G+R  E L L  +N+   +  + +
Sbjct: 174 IEETKTFLTY--------AKFDNPIYYHLFLLALNTGMRRGELLGLKWKNVDLVEGKISV 225

Query: 191 Q---------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDL-----NLNIQLPLF 230
                                 R++ +  ++ K    Y                    +F
Sbjct: 226 TETLIYDERGFRFTEPKTSGSKRLISIDQTLCKEFKSYKAKQNEFKLAIGTAYEDHDLVF 285

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
               G+P+ P        ++ +   +P     H LRH+ AT LL  G + + +   LGH 
Sbjct: 286 CREDGQPIYPRTLTTIFERVVKTSKIPK-IRFHDLRHTHATLLLKLGINPKIVSERLGHS 344

Query: 291 RLSTT-QIYTNVN 302
            + TT   Y++V 
Sbjct: 345 SIKTTLDTYSHVT 357


>gi|284112236|ref|ZP_06386560.1| Tyrosine recombinase [Candidatus Poribacteria sp. WGA-A3]
 gi|283829717|gb|EFC34040.1| Tyrosine recombinase [Candidatus Poribacteria sp. WGA-A3]
          Length = 259

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 47/199 (23%), Positives = 80/199 (40%), Gaps = 11/199 (5%)

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-------RIQ 191
           +  L+    +    + RN  +  L    G RISE LSLT  ++  +   +       +I 
Sbjct: 11  EIRLVSACFDGNPFEHRNRGLFMLGVSTGGRISELLSLTIGDVYQNGKPVTDLLFDKKIV 70

Query: 192 GKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGK---PLNPGVFQRYI 247
             G+  R VP+    R AI             +    PLF          +N       +
Sbjct: 71  KGGEVSRAVPVNTDGRTAIENLIDWHREKYKTIAPSRPLFPSRNKNGSVAMNRQTAHEML 130

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++  +  GL      H+LR SFA  +    GD+  +Q +LGH  +STTQ Y  VN     
Sbjct: 131 KKAFQAAGLNGKLATHSLRKSFAQRVYEESGDIYLVQELLGHRNVSTTQKYIGVNYATAR 190

Query: 308 DWMMEIYDQTHPSITQKDK 326
           + +  +   +  + +++D+
Sbjct: 191 ETVEAMALDSKNASSERDR 209


>gi|300770362|ref|ZP_07080241.1| phage integrase family site-specific recombinase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762838|gb|EFK59655.1| phage integrase family site-specific recombinase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 419

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 98/285 (34%), Gaps = 25/285 (8%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKS 97
           Y+    +   F      +        +++ + ++ F     T+ K    ++  +L  I+ 
Sbjct: 132 YKAILNKLERFNKSRQLK------FSEITVSYLKRFSEHLATECKNRTNTISTNLKVIRK 185

Query: 98  FLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
                   ++  E  +    ++ L+   +    L ++    +    L             
Sbjct: 186 LYNLATLEEVVPEERNPFKKLK-LEWEKTNIGYLTKEDIDKIRHVEL----DPMGKDYHI 240

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
            +  ++ +Y  GLR S+ L L  +++ DD+       K      V L       +  Y  
Sbjct: 241 RNMFVFAMYTGGLRFSDLLMLRWEDVQDDERVKVYTQKTKTNLTVKLTNVSLAILSIYRP 300

Query: 216 ----------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
                         D + N   P +   R   +N  V    +R++ +  G+      H  
Sbjct: 301 STYTNASGFIFPFLDNDKNYSNPKYLYRRISSINA-VANTRLREIGKKSGINKHLHFHMS 359

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           RH+FAT  L  G  L  I  ++GH  ++ T+ Y  + +K     M
Sbjct: 360 RHTFATRGLEIGMPLTHISKLMGHSSVAMTENYAKLINKELDKAM 404


>gi|283795778|ref|ZP_06344931.1| putative transposase [Clostridium sp. M62/1]
 gi|291076409|gb|EFE13773.1| putative transposase [Clostridium sp. M62/1]
          Length = 411

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 57/345 (16%), Positives = 113/345 (32%), Gaps = 64/345 (18%)

Query: 20  NWL--QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           N+L  + +  +  L   T  +Y      F+        +    + +R + Y+++  F + 
Sbjct: 73  NFLFDRYISTKTELRSTTYSNYLYTWNHFIR-------DTFGKKKVRDVKYSDVLFFYTD 125

Query: 78  R-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKS----NSLPRALNE 131
               Q +   +L+   + ++   +   +  I  ++ +      +KK         RAL  
Sbjct: 126 LINNQGLQINTLETINTVLRPTFQLAVRDDIIRKNPVDGAYCEVKKRNGGVRKTRRALTV 185

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            Q    ++ V  +                  L G G RI EA+ +   +I  +   + I 
Sbjct: 186 DQQRKFMEYVAKN------PFFYHWYPFFVFLLGTGCRIGEAIGVRWDDIDLENRIIDIN 239

Query: 192 G----------------------KGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLN 224
                                       R +P++  V   + E Y+         +    
Sbjct: 240 HSLTYYQRADDSYKCEFRVSLPKTEAGNRRIPMMQQVYDVLQEEYERQKQEGFCVENVDG 299

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT---------------AHTLRHSF 269
           +   +F    G P NP    R I+++          T                H  RH+F
Sbjct: 300 MTNFVFTNRFGMPHNPAAVNRAIKRIVDTHNSEEEVTAKKEKREPVMIPRFSCHIFRHTF 359

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
           A+    N  +++ IQ ++GH  +STT  IY   N       + ++
Sbjct: 360 ASRFCENETNIKVIQEVMGHADVSTTMNIYAEANPDVTKSVIEKL 404


>gi|168204762|ref|ZP_02630767.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Clostridium perfringens E str. JGS1987]
 gi|170663693|gb|EDT16376.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Clostridium perfringens E str. JGS1987]
          Length = 386

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 58/336 (17%), Positives = 124/336 (36%), Gaps = 45/336 (13%)

Query: 8   EIVSFELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           E+ +  L    +NWL Q ++  R   + T   YE   +  +  +       I    ++ L
Sbjct: 56  EVDNTILKDYLENWLKQYIKPTRK--ENTYYRYESIIKNSINPI-------IGNVQLKNL 106

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
               I + ++  + + + + +L+   + + + L    K ++   +    +   K+   + 
Sbjct: 107 KAIHIESMLNSNKEKNLTNTTLQNIYTVLNAALNRAVKLQLINNNVCKFVDRPKRERFIA 166

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             L+ ++   +++      S    + D      L +    GLR  E   LT  NI    +
Sbjct: 167 ETLSIEEFNYILN------SLSDSYNDYLMKLALTITLELGLRRGELAGLTWDNIDLKNN 220

Query: 187 ---------------TLRIQGKGDKIRIVPLLPSVRKAILEY-------------YDLCP 218
                          T+      +  R + +  ++   + ++             +    
Sbjct: 221 KIKIINNLIKTGKGVTVTTPKTEESKRTLIISDTLVSMLKQHKKILNQNKLKYGEFYTKD 280

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
              N      +F    G  ++P  +     ++ + L +      H LRH+ AT LLS G 
Sbjct: 281 NFFNNKKYDFIFVWENGIYVDPNYWTHRFGRILKSLNINKKIRWHDLRHTNATLLLSQGV 340

Query: 279 DLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           + ++IQ  LGH  ++TT  IY++V  +   D   +I
Sbjct: 341 NFKTIQIRLGHADINTTLNIYSHVTEEMQKDATNKI 376


>gi|150006222|ref|YP_001300966.1| integrase [Bacteroides vulgatus ATCC 8482]
 gi|149934646|gb|ABR41344.1| integrase [Bacteroides vulgatus ATCC 8482]
          Length = 407

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 50/299 (16%), Positives = 109/299 (36%), Gaps = 25/299 (8%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
            +  SY       L    F     +   T   L+    +++      +     +   +L 
Sbjct: 123 NSTSSYRQSKTSQLNLREFIGLRGMNDITFEDLTEEFGKSYKLFLIGKGYSASNTNHNLC 182

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            ++  +     R +   + + ++   KK +   R ++    L +++     T  E K ++
Sbjct: 183 WLQRLVYIAVDRGLLKFNPLEDVGYEKKGSPKRRHISRNDLLLIME-----TPMEDKALE 237

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLR-IQGKGDKIRIVPLLPSVRKA 209
                +       GL   +  +L P +I    D +  +R  + K +    +PL P   + 
Sbjct: 238 LARR-MFVFSSLTGLAYVDLRNLYPHHIGMTADGRKYIREKRAKTNNEAFIPLHPIAEQI 296

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +  Y          +   P+F        +          L   LG+  + TAH  RH+F
Sbjct: 297 MSLYNT-------ADDSKPVFPLS-----SRDSMWFEFHSLGVALGINENLTAHVARHTF 344

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
             +++++G  + SI  ++GH  L +TQ+Y  +        M ++  +     T++  +N
Sbjct: 345 GVNMVTSGISMESIAKMMGHSNLRSTQVYAVITDDKISKDMDKLMLR---RETKETDQN 400


>gi|260577793|ref|ZP_05845728.1| integrase [Corynebacterium jeikeium ATCC 43734]
 gi|258604188|gb|EEW17430.1| integrase [Corynebacterium jeikeium ATCC 43734]
          Length = 391

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 102/268 (38%), Gaps = 24/268 (8%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQK-------IGDRSLKRSLSGIKSFLKYLKKRKITT 109
            +    +  L+  +IRA+++  +T +       +G  ++  +L+ +K  L+      +  
Sbjct: 91  DLADHPVGTLAPADIRAWVATLQTGRPWKGGAPLGVSAVSSALANVKLVLEQAVDDGLIP 150

Query: 110 ESNILNMRNLKKSNSL--PRALNEKQALTLVDNVLLHTSHETK------WIDARN-SAIL 160
           ++    +     +  +       ++Q   L+           K      +    + S ++
Sbjct: 151 KNPARRVTAPAPTTRVTWHDIPTKEQIDQLIRYARTGYGKREKGKKYSWFQAHPDLSVMI 210

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRI----QGKGDKIRIVPLLPSVRKAI-LEYYD 215
            +    GLR  E   L  QN+  D   + +       G   R +       +A+ ++   
Sbjct: 211 RVSAATGLRPGEVAGLRWQNVDFDNGQVLVLEQAMRTGAGTRPLKTGDKGIRALSVDDET 270

Query: 216 LCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           L   +    +   +F    G  P+    + + +R+L   +G+    T H+ RH  AT LL
Sbjct: 271 LAAINELPRVDERVFHARWGGVPMTAEKYSQALRRLCLVVGVD-PVTPHSFRHFHATELL 329

Query: 275 SNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           S G  ++++Q  LGH     T  +Y + 
Sbjct: 330 SAGVPVKAVQRRLGHSSARVTLDVYAHF 357


>gi|229061538|ref|ZP_04198882.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus AH603]
 gi|228717772|gb|EEL69422.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus AH603]
          Length = 322

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 63/312 (20%), Positives = 118/312 (37%), Gaps = 22/312 (7%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           VS E     +++L   + + G +  TLQ Y  D R  L  +  + E K     + +L+  
Sbjct: 17  VSQENKNLVKDFLIEKKAQ-GKAASTLQQYNWDLRIILFLIHQHFENK----NLVELTRK 71

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRN-LKKSNSLP 126
           +IR      +  ++ +  +   +S ++S L++           +    +R   K      
Sbjct: 72  DIRNLSIIFQEMRMSNARVNGLMSALRSALEFCADDDDYDYEFNVGSRVRGLPKNPIREI 131

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             + E Q   L+D +L              +  L L Y    R +E   +  + + +   
Sbjct: 132 TFITEDQINWLIDELLEQEK-------YMLATYLALSYYSAARKNEVYQVQKEGLKEQYY 184

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           T  ++GK  K   +     V+K I  Y +    D   ++ + +++    K LN  VF  +
Sbjct: 185 TNVVRGKRGKKFRLYYNHRVQKCIRLYINQRGKDTIPDLFVRVYKNGERKRLNKSVFNYW 244

Query: 247 IRQLRRYL----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                + L    G       H  RHS   +L   G  L  ++S+  H  +STT+ Y    
Sbjct: 245 CDIFAKMLNEKEGKEFKMNPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTESYLK-- 302

Query: 303 SKNGGDWMMEIY 314
                + + EI+
Sbjct: 303 -DRSEEDIAEIF 313


>gi|188526763|gb|ACD62263.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 50/94 (53%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 65  RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 124

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 125 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|332885111|gb|EGK05363.1| hypothetical protein HMPREF9456_02862 [Dysgonomonas mossii DSM
           22836]
          Length = 445

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 118/318 (37%), Gaps = 33/318 (10%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           +  NL E+      +  + + + + I R  S  T+++Y     Q   FL  +        
Sbjct: 120 KKENLLEL----FREHNEEYAKQVGITR--SAETMRNYISVYNQTERFLCTHY--NTNDI 171

Query: 62  TIRQLSYTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            +RQL  + I  F S  R  Q     ++      ++  ++    + I  ++        +
Sbjct: 172 PLRQLELSFIEKFDSFMRIEQGFTAHTVSSYTIMLRKIIRRAISQGILHKNPFAGYI-PE 230

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +     R + +++    ++  +                +       GL  ++  +L+ +N
Sbjct: 231 QPPRKRRHMTQEELDKFMNISIASKRV------CHTRDMFLFATFTGLSYADMRNLSEEN 284

Query: 181 IMDDQS---TLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
           I  + +    L+I + K      +PLL    + + +Y                       
Sbjct: 285 IYRENNGNLWLKIKRQKTGSKCNIPLLDISLQIMEKYKSERKG------------SKIFN 332

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTT 295
            ++       ++++ +  G+  + T H  RH+F T + LS G  + ++  ++GH  + TT
Sbjct: 333 MIDLSCMNVNLKKIAKLCGIERTITYHQSRHNFGTLITLSQGVPMETVSQMMGHKCIKTT 392

Query: 296 QIYTNVNSKNGGDWMMEI 313
           QIY  +  +   + M ++
Sbjct: 393 QIYAKLTRQKLNEDMKKL 410


>gi|107024205|ref|YP_622532.1| phage integrase [Burkholderia cenocepacia AU 1054]
 gi|116688470|ref|YP_834093.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
 gi|105894394|gb|ABF77559.1| phage integrase [Burkholderia cenocepacia AU 1054]
 gi|116646559|gb|ABK07200.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
          Length = 347

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 50/265 (18%), Positives = 102/265 (38%), Gaps = 12/265 (4%)

Query: 49  FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT 108
           F A + E      ++  +S   +  +  +R      + +++  L+ +    +   +    
Sbjct: 86  FSAKHLEAFFGKYSMAAVSAELVAKYRDERLAAGKSNNTVRLELAMLGHLFRMAIQEWGI 145

Query: 109 --TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
             T + + N+R         R L+  +   L      H++    W       I+ L    
Sbjct: 146 GLTFNPVANVRKPSPGAGRDRRLSRDEHQRLFAAADAHSNPMLGW-------IVRLAVET 198

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           G+R SE   L    +  D+  + ++  K    R+VPL     + +    D     ++ ++
Sbjct: 199 GMRSSEITGLCRSQVDLDRRVVTLRDTKNGSSRVVPLTREAAEVLRAALDNPIRPIDTDL 258

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
                 G  GK   P VFQ+    + R LG+ +    H LRH   + L+  G   + + S
Sbjct: 259 VFFGEPGRDGKR-KPYVFQKLWTGIVRDLGM-VDLHFHDLRHEAVSRLVEAGLSDQEVAS 316

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWM 310
           I GH  +   + YT++ +++    +
Sbjct: 317 ISGHKSMQMLKRYTHLRAEDLVQKL 341


>gi|206599920|ref|YP_002241725.1| gp40 [Mycobacterium phage Fruitloop]
 gi|206287008|gb|ACI12354.1| gp40 [Mycobacterium phage Fruitloop]
          Length = 372

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 57/314 (18%), Positives = 111/314 (35%), Gaps = 36/314 (11%)

Query: 4   NNLPEIVSFEL--LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           N  P     EL   +  ++ + +L    G+ + T+  YE        +LA   +  +   
Sbjct: 62  NPTPRGTKSELTVAEWIRHHIDHLT---GVEQYTIDKYE-------QYLANDIKPNLGDI 111

Query: 62  TIRQLSYTEIRAFISKRRT------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
            + +LS  +I  ++    T           ++L+     +   L     R   + +    
Sbjct: 112 PLSKLSEEDIARWVKVMETTGGRDGNGHAPKTLRNKYGFLSGALNAAVPR-YLSTNPASG 170

Query: 116 MRNLKKSNSLPR--ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
                    LPR  A ++ +   L                     ++  +   GLR  E 
Sbjct: 171 -------RRLPRGNAEDDDEIRMLTHAEFDRLRDAVTPHW---KLMVQFMVSTGLRWGEV 220

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPL--LPSVRKAILEYYDLCPFDLNLNIQ-LPLF 230
            +L P+++  + ST+R++          +   P  +++             L++    +F
Sbjct: 221 SALQPKHVDLETSTIRVRQAWKYSSAGYVLGPPKTKRSRRTVDVPARLLERLDLSNEFVF 280

Query: 231 RGIRGKPLN-PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
               G P+  PG  +R         GL    T H LRH++A+  L+ G  +  +   LGH
Sbjct: 281 VNTDGGPVRYPGFLRRVWNPAVEKAGLVPRPTPHDLRHTYASWQLTGGTPVTIVSRQLGH 340

Query: 290 FRLSTT-QIYTNVN 302
             +  T   YT+V+
Sbjct: 341 ESIQITVDTYTDVD 354


>gi|29347986|ref|NP_811489.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29339888|gb|AAO77683.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 411

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 52/295 (17%), Positives = 111/295 (37%), Gaps = 30/295 (10%)

Query: 31  LSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSL 88
            + +T+  Y+   ++    +  FY +E IT     +L+   I+AF    +T+  +   ++
Sbjct: 129 YAPVTINRYKNVLKKLENSIPTFYDKEDITFH---ELTPEFIKAFDLHLKTEVGLCRNTI 185

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R +   K        +    +      + +++  + P  L   +  T+++         
Sbjct: 186 VRYMKCFKKITNMALAKGWMKKDAFYGYK-MEQDETDPVFLTYDELQTVMNKEF------ 238

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP---- 204
           T         I       GL  ++  +L  ++++ D +      KG    +         
Sbjct: 239 TIPRLVLVRDIFIFACFTGLAFADVSTLKKEDLVQDNNGDWWIRKGRIKLMHRHKASSIC 298

Query: 205 -----SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
                 V  AIL+ Y+  P  +     LP+    +           Y++++  + G+  +
Sbjct: 299 NIPLLPVPLAILKKYENNPVCIKKGCCLPVPCNQKM--------NSYLKEIADFCGIKKN 350

Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            T H  RH+F T + L+N   L+ +  +LGH     TQ Y  V + +    M+ +
Sbjct: 351 ITTHAGRHTFGTTITLANNVPLQDVSVMLGHASTRMTQHYARVMNASLKKSMLNV 405


>gi|302385516|ref|YP_003821338.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302196144|gb|ADL03715.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 410

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 59/330 (17%), Positives = 114/330 (34%), Gaps = 50/330 (15%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           L   T  +Y        ++  +  +E +  ++I  +  +E+ +  +K   +     SL+ 
Sbjct: 85  LKASTRANY------LYLWDCYIKKEPLANKSINTIHKSEVLSLYTKLLKKGFATNSLES 138

Query: 91  SLSGIKSFLKYLKKRKITTESNILNM-RNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             + I   L+         ++    +  +LKK  + P     + ALT +           
Sbjct: 139 INNLIHPTLEMAVDDDYIRKNPSKGVYSSLKKDGTAPEP-EPRIALTRIQQRNFLRFAAK 197

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----------------- 192
                    +L  L G G+R++E   LT  ++  + +++ +                   
Sbjct: 198 HPTYCHWLPVLTTLVGTGMRVAECTGLTWNDVDFENNSIFVNHNLIYRVIDDKAGFHITT 257

Query: 193 --KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-------FRGIRGKPLNPGVF 243
                  RI+P+L       L         L    +L L       FR   G  ++    
Sbjct: 258 PKTAKGTRIIPILFPEVMEQLRLLREVWDTLYPGPELVLDGYYGFVFRNRFGSFMSAHNI 317

Query: 244 QRYIRQL--------RRYLGLPL-------STTAHTLRHSFATHLLSNGGDLRSIQSILG 288
            R I ++             L           + H LRH+F T L     D++ IQ ++G
Sbjct: 318 NRAIIRIYTEYNMTEMDQAELEDREPELIPHFSVHNLRHTFCTRLCEMTNDIKFIQQVMG 377

Query: 289 HFRLSTTQ-IYTNVNSKNGGDWMMEIYDQT 317
           H   STT  IY+++  +   + + +I  Q 
Sbjct: 378 HADFSTTMDIYSHITQEAMQNKVKQISGQF 407


>gi|255307072|ref|ZP_05351243.1| integrase [Clostridium difficile ATCC 43255]
          Length = 370

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 62/304 (20%), Positives = 122/304 (40%), Gaps = 37/304 (12%)

Query: 31  LSKL-TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            S+  +L +Y      ++     Y    I    I+ L    I+ +I K  + K+  +S+K
Sbjct: 75  YSENISLATY----NNYVSICKNYINPSIGRYKIQDLHPVHIQNYIDKL-SYKLNPQSIK 129

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             ++ +K  +K   + K+  E+ + ++   +         + +Q + L+D   L  + E 
Sbjct: 130 IHINILKLAIKRAYRLKLIKENVMDSIEAPRYKKFKNEIYDREQMIKLLD---LAKNTEM 186

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---------------KG 194
           +         + L  G GLRISE L LT  NI  +++T+ +                   
Sbjct: 187 ELP-------INLAIGLGLRISEVLGLTWDNIDFEENTITVNKITSRINGSVILKEPKTE 239

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNI----QLPLFRGIRGKPLNPGVFQRYIRQL 250
             +R +     +   + EY      +L  +        LF   + +P+   V  +  ++ 
Sbjct: 240 SSVRKISSPKELMSLLKEYKIKQNKNLLKSSIRNNNNLLFFNKKCEPIAEDVMSKKFKRF 299

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDW 309
                LP     H LRHS  T L+++   ++ I   +GH  +STT  +Y++V  +   + 
Sbjct: 300 LEKNELP-HIRFHDLRHSHVTLLINSKVPIKVISERVGHSNISTTLSVYSHVLKEMDKEA 358

Query: 310 MMEI 313
             +I
Sbjct: 359 SDKI 362


>gi|299142713|ref|ZP_07035842.1| integrase [Prevotella oris C735]
 gi|298575742|gb|EFI47619.1| integrase [Prevotella oris C735]
          Length = 333

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 61/308 (19%), Positives = 112/308 (36%), Gaps = 32/308 (10%)

Query: 16  KERQNWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           KE  ++L  +E E      +  T+ +++        F            T  Q+ Y  I 
Sbjct: 50  KEDSSFLDWMEGEIDKETYTAGTIANHKAALAVLRRFKKDI--------TFTQIDYKCIC 101

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F +  +T      ++ + +   + F+      ++ T         +K  N   ++L E+
Sbjct: 102 DFENFLKTAGYAINTIAKFMKIFRRFVNLAIDEELMTVYPFRKYH-IKTENVQKQSLTER 160

Query: 133 QALTLVDNVLLH--TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           +   + +  +    T+ E K I              GLR S+ + +T Q+I +       
Sbjct: 161 ELRRIEEKEVKEELTNEERKVIKG-----FLFSVYSGLRFSDIVQVTKQHIKN-----IY 210

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYI 247
           + K   +R+      VR  I + +      L   N      LF+       N       +
Sbjct: 211 RNKWVVMRMQKTDHEVRIPISKMFGGKAAALVQENKTTTGKLFQLPCNARCN-----IVL 265

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +++ +   +    T H  RH+ AT LL  G  L  IQ ILGH  + TTQ+Y+ V      
Sbjct: 266 KRVLKRFNIHKHITFHCARHTCATVLLGKGVSLPIIQHILGHQSIKTTQVYSAVKDSTIN 325

Query: 308 DWMMEIYD 315
             +   + 
Sbjct: 326 KEIRRAFR 333


>gi|268610896|ref|ZP_06144623.1| integrase family protein [Ruminococcus flavefaciens FD-1]
          Length = 399

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 56/315 (17%), Positives = 111/315 (35%), Gaps = 54/315 (17%)

Query: 46  FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-------IGDRSLKRSLSGIKSF 98
           +L +L      KI    ++ L+  +++ FI   +          +  ++L   ++ I   
Sbjct: 94  YLGYLRHIQRHKIKDIKLKNLTVDDLQEFILFLKNAGQLDTGLPLSAKTLHNIMNMIHKA 153

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           L +   R++   +    ++  K      R L E +    V  +             R   
Sbjct: 154 LDHAVGRQLIYHNAADYVQLPKVMTPEMRVLTETEISGFVAAME----------GDRLQI 203

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--------------------------- 191
            L L+  CGLR+ E  +LT  ++        +                            
Sbjct: 204 ALVLMLFCGLRLGECCALTHDDVRCKDGIYYLNISKSLNRVSNFEAKAGEPKTILRLQET 263

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVFQRY 246
                 R VPLLP V   +L +          +  +      L     G  L+PG  ++ 
Sbjct: 264 KTSKGKRQVPLLPEVADKVLAHIQWQKEQAEKSYGMYEENPWLIANELGHYLDPGTVRKK 323

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSK- 304
           ++ +   +G+      H LRH++A+  +  G  L  +  ILGH   + T ++Y +++ + 
Sbjct: 324 LKAVAESIGIT-DFHPHCLRHTYASQAVKAGVPLPYLSDILGHESTAFTAKVYVSLDLQG 382

Query: 305 --NGGDWMMEIYDQT 317
             N    M E+  ++
Sbjct: 383 RANAQAAMTELVKKS 397


>gi|119488709|ref|ZP_01621718.1| Type 1 fimbriae Regulatory protein fimB [Lyngbya sp. PCC 8106]
 gi|119455132|gb|EAW36273.1| Type 1 fimbriae Regulatory protein fimB [Lyngbya sp. PCC 8106]
          Length = 193

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 72/185 (38%), Gaps = 12/185 (6%)

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           S      L  K+   +        +H       R++AI+ L++  GLR +E +SL    I
Sbjct: 13  SKREREYLRPKEVEAI-----HKAAHSFGRHGVRDAAIILLMFRHGLRTAELVSLKWSQI 67

Query: 182 MDDQSTL-RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
             +   +  I+ K       PL     +++           +      +F   R  PL+ 
Sbjct: 68  DLNDGYIEIIRVKHGHDSTHPLRAPELRSL------RQIKRDYPETQYVFVSERKAPLST 121

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              +  I +     GL  S   H LRH+   +L S G D R+IQ  LGH  +  T  YT 
Sbjct: 122 RTIRHIIARAGELAGLKESVYPHQLRHACGYYLASLGHDTRAIQDYLGHKNIHHTVRYTQ 181

Query: 301 VNSKN 305
           ++ + 
Sbjct: 182 MSPQR 186


>gi|88857913|ref|ZP_01132555.1| super-integron integrase IntIA [Pseudoalteromonas tunicata D2]
 gi|88819530|gb|EAR29343.1| super-integron integrase IntIA [Pseudoalteromonas tunicata D2]
          Length = 167

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 3/105 (2%)

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            PS  K +   Y      L+++    L   +R   ++    Q+ ++   R   +    + 
Sbjct: 56  YPSAPKELGWQYLFPSGKLSIDPDSTL---LRRHHIDESGLQKAVKSASRKAAIGKHVSC 112

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           HTLRHSFATHLL  G D+R++Q  LGH  + TTQIYT+V  + G 
Sbjct: 113 HTLRHSFATHLLQAGMDIRTVQEQLGHSDVKTTQIYTHVLKQGGN 157


>gi|260560424|ref|ZP_05832599.1| predicted protein [Enterococcus faecium C68]
 gi|260073584|gb|EEW61911.1| predicted protein [Enterococcus faecium C68]
          Length = 382

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 49/290 (16%), Positives = 103/290 (35%), Gaps = 41/290 (14%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
              L         KI+I   ++ +  +++ F+  R       R              Y  
Sbjct: 98  NHILPAFGALKINKISIDIAQKFANEKVKKFVLYREFINNASR-----------ICDYAI 146

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET--KWIDARNSAILY 161
           K     ++    +   K+  S+    +E+  L   +   L    ++  K  D R  +   
Sbjct: 147 KLGYLQDNPFKKITVPKRKVSV----HEEDTLNFFNKEELEIFLKSVEKKKDIRMYSFFR 202

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------------GDKIRIVPLLPS 205
            L   G+R+ E L+LT ++I  + + ++I                    +  R +P+   
Sbjct: 203 TLAFTGMRVGELLALTWKDIDFNDNYIKINKTLARGKNRRLYVEQPKTKNSKRDIPVDDE 262

Query: 206 VRKAILEYYDLCPFDL------NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
               + ++       L       L+    +F   + + L     ++++  + +   L   
Sbjct: 263 TMNILKKWRLEQRKWLLTLGINTLSKNQLVFSNQKNEYLQLSKPRKWLEVIIKQNNL-KR 321

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGD 308
            T H LRH+ A+ LL  G +++ +Q  LGH  +  T  +Y ++  K    
Sbjct: 322 ITIHGLRHTHASLLLEAGANIKDVQERLGHSSIQITMDLYIHITDKRKEK 371


>gi|229126350|ref|ZP_04255367.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BDRD-Cer4]
 gi|228657121|gb|EEL12942.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BDRD-Cer4]
          Length = 347

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 104/271 (38%), Gaps = 31/271 (11%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           + +L+   ++ +++  R + +   ++++ +  I++ L+     ++ T++    ++  K  
Sbjct: 84  LAKLTSLHMQNYVNSLRDEGLKRGTIEKIIKLIRNSLENAIDLELITKNVAAKIKLSKAD 143

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
                  NE++    +              D+R   + ++    G+R  E L L  +++ 
Sbjct: 144 KEELTVWNEQEVQLFLKA----------AQDSRYYIVFHMALVTGMRQGELLGLRWKDVD 193

Query: 183 DDQSTLRIQ--------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDL-----NL 223
            ++  L I                    +R + L  S    + ++  +   +        
Sbjct: 194 LEKGHLTISQTLSHDGKTFLVGGKTKSSLRKILLPASTVAKLKKHGVVVLKEKLSQGEEY 253

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
           +    +     G  +NP   +R +  L +   +P     H L H+ AT L++ G D++ I
Sbjct: 254 HDNDLVMCTPSGTSINPANVRRSLNALIQNAAVPK-IRFHDLHHTHATLLMAKGVDVKVI 312

Query: 284 QSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
              LGH  +  T   Y++V      D + +I
Sbjct: 313 SERLGHSNIKITLDTYSHVLPTIQEDAVNKI 343


>gi|295086221|emb|CBK67744.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 213

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 92/218 (42%), Gaps = 23/218 (10%)

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +   +L+ +K  L+   + K   E+    +++ K++++    L   +   L      H
Sbjct: 3   ASTANNNLNKLKCVLRLAYEDKRIKENIAPRLKHAKEASTRREFLTLDEVKKL-----AH 57

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           T      + +  +A+   L   GLRIS+ + L  +NI        I+G      +  +  
Sbjct: 58  TPCGKPVVKS--AALFSCL--TGLRISDIIRLQWENI--------IRGADGGWCMHIVTK 105

Query: 205 SVR-KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
             R +A+L   D             +F+G     +   +   Y++   +  G+    T H
Sbjct: 106 KTRTEAVLPLSDEALALCGERSTGQVFKG-----MTQALLPLYLKDWIKSAGITKHITFH 160

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             RH++AT  L+ G DL +I  +L H  ++TTQ+Y +V
Sbjct: 161 CFRHTYATLQLAAGTDLYTISKMLTHSNVATTQVYADV 198


>gi|319935324|ref|ZP_08009762.1| hypothetical protein HMPREF9488_00593 [Coprobacillus sp. 29_1]
 gi|319809732|gb|EFW06133.1| hypothetical protein HMPREF9488_00593 [Coprobacillus sp. 29_1]
          Length = 432

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 53/295 (17%), Positives = 107/295 (36%), Gaps = 42/295 (14%)

Query: 37  QSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
            +Y     Q    +A ++ E++IT+  +      +  ++     T+K+   ++ +  + I
Sbjct: 131 STYGTYLMQINSNIAPYFREQEITLSDLTSFDIQDFYSY--AFETKKVSANTVLKWHANI 188

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
              L+Y  + K+ TE+   N+   KK      A ++ +   L                  
Sbjct: 189 HKALEYAVQNKLITENPSKNVSKPKKIQFTGSAYSQDELDRLFQAAKGDPLELG------ 242

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-------------------QGKGDK 196
               +YL    GLR  E + +    I  +  T+++                   + K   
Sbjct: 243 ----IYLAAFYGLRREEVVGIKWDAIDFEAKTIKVGTTVTVTNINGKLEEVEKDRAKNKS 298

Query: 197 IRIVPLLPSVRKAILEYY--------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
              V  LP++ + +L            L     N   +  ++    G  + PG   ++  
Sbjct: 299 SYRVYPLPNLFEELLIKLKNDQTKNKQLAGRSYNYKYEDYIYVDKLGNRIKPGYITQHFA 358

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVN 302
            + +   L      H LRH+ AT +   G +L  +Q  LGH  ++TT   Y +++
Sbjct: 359 LVLKKNNL-RHIRFHDLRHTCATRMCIKGENLVKVQKWLGHSSITTTANTYAHLD 412


>gi|37524428|ref|NP_927772.1| recombinase, Type 1 fimbriae regulatory protein [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36783852|emb|CAE12714.1| Recombinase, Type 1 fimbriae regulatory protein [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 190

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 73/183 (39%), Gaps = 8/183 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L   +   +++               R+  +L + +  G R+SE  +LT  ++     
Sbjct: 5   KFLTRHEIDAILE------KARQGRHAERDYCMLLMCFIHGFRVSELCNLTLSDLDLSSE 58

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            + ++  KG      PL+P    A+ ++ ++       +    +F   +   ++      
Sbjct: 59  IIHVRRLKGGLSTTHPLVPEELNALNQWINIRKSWRESDTS-WVFLSQKSGAISRYQVYS 117

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +++  R   + +S   H LRH+    L   G D R IQ  LGH  +S T IYT  N K 
Sbjct: 118 LLKRYGRQALVDISPHPHMLRHACGYALADLGRDTRLIQDYLGHRNISHTVIYTASNVKR 177

Query: 306 GGD 308
             +
Sbjct: 178 FSN 180


>gi|331091918|ref|ZP_08340750.1| hypothetical protein HMPREF9477_01393 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402817|gb|EGG82384.1| hypothetical protein HMPREF9477_01393 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 413

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 60/342 (17%), Positives = 118/342 (34%), Gaps = 55/342 (16%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-R 79
           + + +  +  L   T  +Y+    +F+             + I  + ++++  F     +
Sbjct: 77  FDRYISTKSELRATTRTNYKYMYDRFVR-------NGFGKKKIATIKFSDVLQFYHHLLK 129

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEKQALTLV 138
            +KI   +L+   + +    +   +  I   +    +    +   LP R    + ALTL 
Sbjct: 130 DKKIQVNTLEIIQTVLHPTFQLAVRDNIIRNNPSDGVMA--QIKKLPGRNHGIRHALTLE 187

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG------ 192
                    E          +   L G G RI EA+ +  ++I   +  + I        
Sbjct: 188 QQRAFIRYVEENEKFESWVTLFKFLLGTGCRIGEAVGIRWEDIDFKKRIISINHSLVYYS 247

Query: 193 -----------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLF 230
                                IRI+P++ +V +A+ + Y     +     ++      +F
Sbjct: 248 REYKEHSTCSFSISLPKTEAGIRIIPMMDTVYEALKKEYAFQEENGFNETEIDGMTGFVF 307

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLG---------------LPLSTTAHTLRHSFATHLLS 275
               G   NP    R I+++                    L    + H LRH+F +    
Sbjct: 308 SNRFGNVHNPQAINRAIKRIYEAYNAEEVVKAAKEKREPILIPHFSCHHLRHTFCSRFCE 367

Query: 276 NGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQ 316
           N  +L+ IQSI+GH  + TT  IY  V      + + E+  +
Sbjct: 368 NETNLKVIQSIMGHADIETTMDIYAEVTETKKYESIQELARK 409


>gi|210610681|ref|ZP_03288562.1| hypothetical protein CLONEX_00752 [Clostridium nexile DSM 1787]
 gi|210152314|gb|EEA83320.1| hypothetical protein CLONEX_00752 [Clostridium nexile DSM 1787]
          Length = 413

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 59/342 (17%), Positives = 119/342 (34%), Gaps = 55/342 (16%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-R 79
           + + +  +  L   T  +Y+    +F+        +    + I  + ++++  F     +
Sbjct: 77  FDRYISTKSELRATTRTNYKYMYDRFVR-------DGFGKKKIAAVKFSDVLQFYHHLLK 129

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEKQALTLV 138
            +KI   +L+   + +    +   +  I   +    +    +   LP R    + ALTL 
Sbjct: 130 DKKIQVNTLEIIQTVLHPTFQLAVRDNIIRNNPSDGVMA--QIKKLPGRNHGIRHALTLE 187

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG------ 192
                    E          +   L G G RI EA+ +  ++I   +  + I        
Sbjct: 188 QQRAFIRYVEENEKFESWVTLFKFLLGTGCRIGEAVGIRWEDIDFKKRIISINHSLVYYS 247

Query: 193 -----------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLF 230
                                IRI+P++ +V +A+ + Y     +     ++      +F
Sbjct: 248 REYKEHSTCSFSISLPKTEAGIRIIPMMDTVYEALKKEYAFQEENGFNETEIDGMTGFVF 307

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLG---------------LPLSTTAHTLRHSFATHLLS 275
               G   NP    R I+++                    L    + H LRH+F +    
Sbjct: 308 SNRFGNVHNPQAINRAIKRIYEAYNAEEVVKAAKEKREPILIPHFSCHHLRHTFCSRFCE 367

Query: 276 NGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQ 316
           N  +L+ IQS++GH  + TT  IY  V      + + E+  +
Sbjct: 368 NETNLKVIQSVMGHADIETTMDIYAEVTETKKYESIQELARK 409


>gi|319902467|ref|YP_004162195.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319417498|gb|ADV44609.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 418

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 54/283 (19%), Positives = 110/283 (38%), Gaps = 27/283 (9%)

Query: 35  TLQSYE--CDTRQFL-IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           ++ SY      +Q++  FL    ++ I ++ + +     ++A++   +    G   +  S
Sbjct: 124 SISSYRASRYYQQYVSEFLLSNGKKDILLEDVTEEFGKSLKAYLKNAKNLGYGQ--INHS 181

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L  +   +     ++I   + I ++   KK     R ++  +   ++      T    + 
Sbjct: 182 LRWLNRLMYLAVDKEIIRVNPIEDVEYEKKPAPKHRYISRDEFKKIL-----ATPMHDRR 236

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRI-QGKGDKIRIVPLLPSVR 207
           ++    A ++     GL  ++   L P +     + +  +RI + K      +PL P   
Sbjct: 237 MELARHAFIFSSL-TGLAYADIELLYPHHIGANAEGRRYIRINRRKTKIEAFIPLHPIAE 295

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           K +  Y          N + P+F        +       I +L   +G   + + H  RH
Sbjct: 296 KILTLYNT-------TNDEQPVFPLP-----SRDALWFEIHELGVAIGKEENLSYHAARH 343

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           SF T L+S G  + SI  ++GH  +STTQ Y  +        M
Sbjct: 344 SFGTFLISAGLPIESIAKMMGHSNISTTQGYARITDDKISKDM 386


>gi|312882545|ref|ZP_07742286.1| integrase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369945|gb|EFP97456.1| integrase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 342

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 56/297 (18%), Positives = 106/297 (35%), Gaps = 42/297 (14%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           K T  +Y                 ++   T+  +  T I  +  +R  +     +++R  
Sbjct: 75  KRTATNYRQKLELIC--------RELGDPTVNNIDATLINNWQLERMAKGQKANTVRRLS 126

Query: 93  SGIKSFLKYLKKRK-ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           S + +    L +    T    +  ++      S    L   QA  L+D +          
Sbjct: 127 SCLSNVFSVLIETGDFTGAHPLRGLKKPTPEKSEMTYLTLMQAQCLLDYLK--------- 177

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
            D     I+ +    G R  E ++L   N+   +       K  K R VP+   +   I 
Sbjct: 178 NDWELLKIVEVSLATGSRWRETVTLKSSNLSPYRIRFT-NTKTGKPRTVPISKQLYDDI- 235

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
            Y ++     + + Q  L +       +                LP     H LRH+FA+
Sbjct: 236 -YPEIGGKLFSEDPQKRLVKVFNELKFD----------------LPKGQKVHVLRHTFAS 278

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           H + NGGD+ +++ ILGH  ++ T  Y ++   +  D +     + +P    +D +N
Sbjct: 279 HFIMNGGDILTLKEILGHCSINQTMTYAHLAPDHLVDAI-----KLNPLSKLRDPQN 330


>gi|189467428|ref|ZP_03016213.1| hypothetical protein BACINT_03816 [Bacteroides intestinalis DSM
           17393]
 gi|189435692|gb|EDV04677.1| hypothetical protein BACINT_03816 [Bacteroides intestinalis DSM
           17393]
          Length = 412

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 50/295 (16%), Positives = 106/295 (35%), Gaps = 34/295 (11%)

Query: 34  LTLQSYE------CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
            T+ +Y           +F+   + Y    I+I+ I  +  T+   ++  R T K G  +
Sbjct: 128 KTIATYRKYEVTRRHLAEFIQ--SKYNLSDISIKEITPMFITDFELYL--RTTCKCGFNT 183

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             + +   K  +   +   I       N + ++        L E +   ++   ++    
Sbjct: 184 TAKFMQFFKRIILIARNNGILIGDPFANYK-MRLEKVDRGYLTEDEIKIILKKKMVS--- 239

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKGDKIRIVPLL 203
             +    R+  I       GL   +  +L   N       +   +  + K +    VPLL
Sbjct: 240 -ERLEQVRDVFIFSCF--SGLAYVDVANLREDNIRKSFDGNLWIITKRQKTNIDVNVPLL 296

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              +  + +Y            +  L  G     ++      Y++++    G+  + T H
Sbjct: 297 DIPKMILEKY------------KGKLPNGKVLPIISNQKLNAYLKEIADVCGIKKNLTFH 344

Query: 264 TLRHSF-ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
             RH+F  T  L+ G  + ++  +LGH  + TTQIY  + +    + M  +  + 
Sbjct: 345 LARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNNKISNDMQGLDKKF 399


>gi|307564494|ref|ZP_07627035.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307346854|gb|EFN92150.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 409

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 52/285 (18%), Positives = 98/285 (34%), Gaps = 23/285 (8%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF-ISKRRTQKIGDRSLKRSLSG 94
           +  Y         F+      K+T     QL+   I  F           + +   + + 
Sbjct: 134 IHGYHSTRIHLQKFIQRKY--KVTDLAFSQLTENFIYEFGQYFLGECGFQESTFYNAATH 191

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +K+  +   +  +         +  K    LP+AL+      L    L     E +   A
Sbjct: 192 LKTVCRLAYREGLADVLLFDKAKISKGDKRLPKALDRGAFEKL--KTLQFEDLEEEMETA 249

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
           R+  I       G    + + L   +++ DD+  L ++    K  +   +  + +AI   
Sbjct: 250 RD--IFLFACYTGAAYCDLMELNKSHLVRDDEGCLWLKFNRQKTGVPCRVKLLPEAIR-- 305

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF-ATH 272
                        LP         +    +Q Y++ LR   G+    T HT RH+F    
Sbjct: 306 LMEKLHSDERETLLPF--------MGYATYQSYLKALRLRAGISFPFTTHTARHTFATFI 357

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            L  G  + ++  +LGH  +S T+ Y  V  +     + E +D+ 
Sbjct: 358 TLEQGVPIETVSKMLGHSNVSMTERYAKVTPQ----KLFEEFDRF 398


>gi|237742399|ref|ZP_04572880.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           4_1_13]
 gi|229430047|gb|EEO40259.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           4_1_13]
          Length = 416

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 54/284 (19%), Positives = 103/284 (36%), Gaps = 39/284 (13%)

Query: 52  FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111
           ++  E   ++ I        + +  +   + I   ++      +    KY  + KI T +
Sbjct: 132 YFYRENKKLKEIEDFDIE--KYYYHELNYRNISPNTVLHYHYLLSLVFKYALRHKIITRN 189

Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
            + ++   KK   +    N ++   L+D  LL    E  +     +A        GLR S
Sbjct: 190 PLDSVEKPKKKKYVAEVYNAEEINILLD--LLKREEENLYFGVLMAAYF------GLRRS 241

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKI--------------------RIVPLLPSVRKAIL 211
           E + L   +I  +++T+ I     +                     R   L   +++ +L
Sbjct: 242 EVIGLKWSSINFEENTITIMSTVKETNIDGKHIFVCQDKTKSPAGLRSFSLPIEIKELLL 301

Query: 212 EYYDLCPFDLN-------LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           E  +    +         +  +  ++    GK L P        +  +   L      H 
Sbjct: 302 EIKEKQEENKKYLGKGYYMEDKEYIYVDDGGKRLRPNYLTTRFGKFLKKFNL-KHIRFHD 360

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGG 307
           LRHS AT L  N   ++ IQ+ LGH  + TT  IY ++ ++N  
Sbjct: 361 LRHSCATILYDNNAGIKEIQTYLGHSSVKTTMEIYVHLMNRNDK 404


>gi|228933187|ref|ZP_04096043.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228826348|gb|EEM72125.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
          Length = 319

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 62/298 (20%), Positives = 111/298 (37%), Gaps = 19/298 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           VS E     +++L   + + G +  TLQ Y  D R  L  +  + E     + +  L+  
Sbjct: 14  VSQENKNLVKDFLIEKKAQ-GKAASTLQQYNWDLRIILFLIHEHFEN----ENLIDLTRK 68

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT--TESNILNMRN-LKKSNSLP 126
           +IR      +   + +  +   +S ++S L++           +    +R   K      
Sbjct: 69  DIRNLSIIFQEMGMSNARVNGLMSALRSALEFCADDDDYNYEFNVGSRVRGLPKNPVREI 128

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             + E Q   L+D +L              +  L L Y    R +E   +    + +   
Sbjct: 129 TFITEDQINWLIDELLEQEK-------YMLATYLSLSYYSAARKNEVYQVQKAELTERYY 181

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           T  ++GK  K   +   P V+K I  Y D    D   ++ + +++    + LN  VF  +
Sbjct: 182 TNVVRGKRGKKFRLYYNPRVQKCIRLYIDQRGKDTIPDLFVRVYKNGERRTLNKSVFNYW 241

Query: 247 I----RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                + L    G       H  RHS   +L   G  L  ++S+  H  +STTQ Y  
Sbjct: 242 CGIFAKMLYEKEGKEYKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSYLK 299


>gi|197363656|ref|YP_002143293.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197095133|emb|CAR60680.1| probable bacteriophage integrase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 337

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 61/314 (19%), Positives = 112/314 (35%), Gaps = 48/314 (15%)

Query: 17  ERQNWLQNLEIERGLSKLTLQS---YECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEI 71
           E + WL   +  R LS+L       Y          ++        +      Q++  + 
Sbjct: 47  EEKPWLGEKQDNRRLSELIELWHDLYGRTLADSDRMMSKLKGICAGMGNPIAAQITAADF 106

Query: 72  RAFISKR----------RTQKIGDRSLK---RSLSGIKSFLKYLKKRKITTESNILNMRN 118
             +   R          R   I  +++    R+LS +  F    K    +  + +  +  
Sbjct: 107 SKYREGRLKGEIPDVNGRCMPIQPQTVNHEQRNLSAV--FGTLKKLGHWSLPNPLSGIPT 164

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            K    +   L  ++  TL+   L  ++  +  I      I  +    G R SEA +L  
Sbjct: 165 FKVDEKMVSFLYPEEIKTLLQ-YLSESNSPSVLI------IAKICLATGARWSEAENLEG 217

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
             +   + T +   K  K+R +P+   +   +                 P  RG    P 
Sbjct: 218 SQVTPYRITYK-NTKSRKVRSIPISKELYNEM-----------------PKKRGQLFTPC 259

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
               F+R + +      LP     H LRH+FA+H + NGG++  ++ ILGH  +  T IY
Sbjct: 260 -RKTFERTVAKAGIE--LPEGQCTHVLRHTFASHFMMNGGNILVLKEILGHSDIKMTMIY 316

Query: 299 TNVNSKNGGDWMME 312
            +    +  D + +
Sbjct: 317 AHFAPTHLEDVITK 330


>gi|150010374|ref|YP_001305117.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149938798|gb|ABR45495.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 310

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 51/304 (16%), Positives = 107/304 (35%), Gaps = 32/304 (10%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +  ++L +  + ++  L  +   S    +SY+     FL F          +    ++  
Sbjct: 1   MKQYDLAEGMRMYIARLREQGRYSSA--KSYQDALNSFLRFCGQ------EMILYTRIDR 52

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK------ITTESNILNMRNLKKS 122
             +  +    R ++    ++   +  I+       +           +   L +++ K+ 
Sbjct: 53  EMLLRYQDYLRDRECSWNTVSTYMRRIRRVYGLAMENGEAPFSRYLFKGIFLGVKS-KQK 111

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            +LP      ++L L+    L      K       A+  +   CG+   +   L   +I 
Sbjct: 112 KALP-----AESLRLLMTAPLAAPELRKTQ----RALCLMFLFCGMAFVDFAHLKKSDI- 161

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
                LR   +     ++  +  V + +L          +  +   L     G+      
Sbjct: 162 -RNGVLRYNRQKTGTPMLVEIQPVARELLAALMTDTLRDSPYLFTFLSGTKTGEEAFREY 220

Query: 243 ------FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
                 F R +++L    G+    T++++RHSFAT L   G  +  I  +LGH  + TTQ
Sbjct: 221 TSALADFNRSLKELANACGVTEIVTSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQ 280

Query: 297 IYTN 300
           IY  
Sbjct: 281 IYLK 284


>gi|89147502|gb|ABD62611.1| integrase [uncultured bacterium]
          Length = 163

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 37/110 (33%), Positives = 54/110 (49%)

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G G+      L      A LE+     F        P    +R   ++    Q+ +++  
Sbjct: 53  GHGEVFMPDALARKYPSAALEFRWQYIFPGRRLSVDPRSGKVRRHHIHENGLQKQVKKAV 112

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              G+    + HTLRHSFATHLL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 113 EAAGISKKVSCHTLRHSFATHLLEAGSDIRTVQELLGHADVSTTMIYTHV 162


>gi|331086028|ref|ZP_08335111.1| hypothetical protein HMPREF0987_01414 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406951|gb|EGG86456.1| hypothetical protein HMPREF0987_01414 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 376

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 43/298 (14%), Positives = 108/298 (36%), Gaps = 36/298 (12%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T+++Y   T +++  +       I   ++  +     +        Q     ++ ++ 
Sbjct: 85  PNTVRNY---TERYIRNIKPL----IGKMSLSDVKPLHCQKIFYDMADQGYRTSTIYQAR 137

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             + + L+Y K+ ++   +     R++K     P   +EK+     D   +   +     
Sbjct: 138 ITLYNMLEYAKENEVLRTNPCK--RSVKSDMGKP---SEKKVALERDVQKIFLRYAEGQS 192

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK---------------- 196
                     +   GLR  E + L  ++I  +  T++I+   +                 
Sbjct: 193 YENQY---RFILQTGLRTGELVGLKWEDIDFESKTIQIRRSMEYRYSVKEWRIGEPKSKS 249

Query: 197 -IRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
             R +PL       +   +  +    +++   +  +F   +G P+    +   + ++   
Sbjct: 250 GYRTIPLTEEAVTILNKQKEKNKWISEISKEWEEFVFLCRKGTPVKNSTYDTALFKICDK 309

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWM 310
             +P   + H LRH+FAT  +  G   +++Q +LGH  +  T  +Y +   +     +
Sbjct: 310 AQIPR-FSMHILRHTFATRCIEAGMKPKTLQMLLGHSNIGITMNLYVHTTEEEKKKEI 366


>gi|313620384|gb|EFR91787.1| phage integrase family protein [Listeria innocua FSL S4-378]
          Length = 309

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 81/213 (38%), Gaps = 21/213 (9%)

Query: 103 KKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
               + +++    +    +  +   +  + LN+ +   L+  + L       W       
Sbjct: 90  VDEGVISQNPTRKIVIKGKTPRPKKA--KFLNQFEVQALLKELNLKEDINWDW------- 140

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212
            + L+   GLR SEAL+LTP +    +  + I    D   +             RK  ++
Sbjct: 141 FILLIIKTGLRFSEALALTPSDFDFSKQKIIINKTWDYKMVTGSFQPTKNESSNRKIQID 200

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +     F   +  + P         +        +  L     +P + T H+LRH+ A+ 
Sbjct: 201 WQLAMQFSQLIKTKDPDKPIFVKSRVFNSTINNRLNVLCENANIP-TITVHSLRHTHASL 259

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           LL  G  + S+ + LGH  ++TTQ  Y ++  +
Sbjct: 260 LLFAGVSIASVANRLGHSSMTTTQETYLHIIQE 292


>gi|261210225|ref|ZP_05924522.1| integrase [Vibrio sp. RC341]
 gi|260840765|gb|EEX67314.1| integrase [Vibrio sp. RC341]
          Length = 317

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 108/270 (40%), Gaps = 30/270 (11%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102
            R+ L  ++      +       L+      +  +RRT ++   ++ R  S +++    L
Sbjct: 69  LRKLLYRISECLGNPVG----SDLTSEMFAKY-RERRTLEVSLTTVNREHSYLRAVFNEL 123

Query: 103 KKRKITT-ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
            +  + T E+ +  +R  +++    R L+  +   L++   + T+            ++ 
Sbjct: 124 DRLGVITYENPLTKIRQFREAEGELRFLSHDEIARLLEQCKVSTNKSLIH-------VVK 176

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           +    G R  EA +L P  I + + T  +  K  K R VP+   +   + E        +
Sbjct: 177 ICLATGARWGEAENLKPSQIANGKVTF-LNTKSKKNRTVPINQILFNELEELEPFSNSRM 235

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
            +   L  FR      L+    +           LP     H LRH+FA+H +  GG++ 
Sbjct: 236 FVG-SLAAFRTA----LSRADIE-----------LPAGQNTHVLRHTFASHYVMGGGNIV 279

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            ++ +LGH  ++TT  Y ++   +  D + 
Sbjct: 280 KLRDVLGHKEITTTMRYAHLAPDHLEDALR 309


>gi|229142694|ref|ZP_04271168.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST26]
 gi|228640757|gb|EEK97114.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST26]
          Length = 322

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 65/312 (20%), Positives = 122/312 (39%), Gaps = 22/312 (7%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           VS E     +++L   + + G +  TLQ Y  D R  L  +  + E K  I     L+  
Sbjct: 17  VSQENKNLVKDFLIEKKAQ-GKAASTLQQYHWDLRIILFLIHQHFENKKLI----DLTRK 71

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRN-LKKSNSLP 126
           +IR      +  ++ +  +   +S ++S L++           +    +R   K      
Sbjct: 72  DIRNLSIIFQEMEMSNARVNGLMSALRSTLEFCADDDDYDYEFNVGSRVRGLPKNPVREI 131

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             ++E+Q   L+D +L       K      +  L L Y    R +E   +  + + +   
Sbjct: 132 TFISEEQIEWLIDELL-------KQEKYILATYLALSYYSAARKNEVYQVQKEELTERYF 184

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           T  ++GK  K   +   P V+K I  Y +    D   ++ + +++    + LN  VF  +
Sbjct: 185 TNVVRGKRGKKFRLYYNPRVQKCIRLYINQRGKDTIPDLFVRVYKNGERRTLNKSVFNYW 244

Query: 247 IRQLRRYL----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +   + L    G       H  RHS   +L   G  L  ++S+  H  +STT+ Y    
Sbjct: 245 CKIFAKMLYEKEGKEFKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTESYLK-- 302

Query: 303 SKNGGDWMMEIY 314
                + + EI+
Sbjct: 303 -DRSEEDIAEIF 313


>gi|255657789|ref|ZP_05403198.1| tyrosine recombinase XerD [Mitsuokella multacida DSM 20544]
 gi|260849979|gb|EEX69986.1| tyrosine recombinase XerD [Mitsuokella multacida DSM 20544]
          Length = 265

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 61/297 (20%), Positives = 117/297 (39%), Gaps = 44/297 (14%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            ++L ++   +  S  T ++Y    R F                 +  S  EI+ F+   
Sbjct: 8   HDFLDDVHATK--SDNTYKNYRNALRYF-----------------KDGSLDEIKLFL--- 45

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               + D + K++L  +   L+Y     +  +++   +++ + + ++     +K    + 
Sbjct: 46  -ENDLADSTKKQTLKVLCIALEY---NDMYDKAHKKLIKSYRPNVTIQECPTDKDVELVW 101

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLRIQGKGDKI 197
            N+L H          R+ A+  L+   GLR+ E + L   +I++     LR        
Sbjct: 102 GNLLTH----------RDRAMFALMAYNGLRVGEVVGLDMDDILNGHRLRLRNTKGKRDA 151

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
            I  + P V  ++  Y      +        LF   RG  ++     ++IR      GL 
Sbjct: 152 IIPLVHPRVLSSLKAYIKERKSE-----SPALFLNHRGVRMSCNGLAQFIRNEFHDNGLA 206

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
               AH+LR  FA  L  NG  ++ IQ  + H  ++TT  Y N++     D + E+Y
Sbjct: 207 FH--AHSLRRYFANTLSRNGIPVQDIQVAMRHASITTTMGYLNIDEDKTRDILREVY 261


>gi|109948086|ref|YP_665314.1| bacteriophage-related integrase [Helicobacter acinonychis str.
           Sheeba]
 gi|109715307|emb|CAK00315.1| bacteriophage-related integrase [Helicobacter acinonychis str.
           Sheeba]
          Length = 378

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 55/264 (20%), Positives = 108/264 (40%), Gaps = 36/264 (13%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN--ILNMRNLK 120
           +++++   I  +  ++  Q+    +LK   + +KSFL + +      ++    + ++N K
Sbjct: 130 LQKITKEAIAKY-HEQALQRYKKNTLKTQHANLKSFLAFCESEGYLEKNPYFAVTLKNAK 188

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           ++  +    + ++   ++ N                 A L + +  G+R  E L+LT ++
Sbjct: 189 EAKKI-EPFSLEEVEAIIKN----------APSLSLKAFLMVAFLTGMRTGEQLALTWED 237

Query: 181 IMDDQSTLRIQGK------------GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
           I  D  T+ I                + +R V LL    K + E             +  
Sbjct: 238 IDFDHQTISINKSLNEWGQITSPKNQNSVREVDLLEPAAKILKEL-----KKSEPAGKKF 292

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +F G    P    VFQR  R+L + L L      +T RH+FA+ +LS G +   +  +LG
Sbjct: 293 VFIG---MPRRTSVFQRRFRELLKALDL-KDRKLYTTRHTFASLMLSQGEEPMWVSKMLG 348

Query: 289 HFRLSTTQ-IYTNVNSKNGGDWMM 311
           H  L+TT   Y++   +   +   
Sbjct: 349 HKDLNTTYGAYSHYIPQQDRERAK 372


>gi|75812896|ref|YP_320513.1| Phage integrase [Anabaena variabilis ATCC 29413]
 gi|75705652|gb|ABA25324.1| Phage integrase [Anabaena variabilis ATCC 29413]
          Length = 360

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 57/300 (19%), Positives = 107/300 (35%), Gaps = 45/300 (15%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ---------- 81
           S  T ++Y     Q    L  Y + +  I  +R ++   + A+++  + +          
Sbjct: 57  SDQTRRAYR----QIGYELVDYMQSRFGISDLRMVTLFHLHAYLAWLKDEKPVRGKKNTY 112

Query: 82  KIGDRSLKRSLSGIKSFLKY--LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            I   +  +  + IKS  ++               ++          R L+E++   L  
Sbjct: 113 GISKNTAAKYTAAIKSLWEWGTRASIGYFAIDLGKDLSIQWDDKLAERILSEREIAKLEK 172

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL-------------SLTPQNIMDDQS 186
             +          +  +  +  L++  G+R  E                L  +   +D  
Sbjct: 173 AAM--AVDLQHNTNKMHWLLFTLMFYSGVRAGEIARQTSDYGKRVITPGLFWRQFREDGD 230

Query: 187 TL--RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI----RGKPLNP 240
            L   + GK +K R + L P     +L+Y      D       P+F       RGKPL+ 
Sbjct: 231 CLLLTVTGKRNKTRTISLDPETSAVLLDYRGDASNDR------PVFPSPSRRDRGKPLSD 284

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              +  + ++    G+    +AH LRH+ AT    NG     +Q+ LGH   +TT  Y +
Sbjct: 285 RGLRLMMEEISTCAGIKF--SAHFLRHTHATLAKKNGASDFDLQADLGHASPATTAKYIH 342


>gi|114762821|ref|ZP_01442253.1| tyrosine recombinase XerD [Pelagibaca bermudensis HTCC2601]
 gi|114544431|gb|EAU47438.1| tyrosine recombinase XerD [Roseovarius sp. HTCC2601]
          Length = 168

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 51/131 (38%), Gaps = 6/131 (4%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+    ERG +  T  +Y  D   F  +LA           +      ++ A++ +  
Sbjct: 9   AFLEAQAAERGAADNTTAAYARDLNDFTGWLAARGH------GLDTAQRADVEAYLIECE 62

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q +   +  R LS IK   ++  +  +  ++  + +    KS  LP+ L+ ++   L+ 
Sbjct: 63  AQGLAVSTRARRLSSIKQLYRFAFEEGLREDNPAVQISGPGKSKRLPKTLSIEEVDRLLQ 122

Query: 140 NVLLHTSHETK 150
               H   E  
Sbjct: 123 AATEHGRTEDD 133


>gi|326939641|gb|AEA15537.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 319

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 63/312 (20%), Positives = 116/312 (37%), Gaps = 22/312 (7%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           VS E     +++L   + + G +  TLQ Y  D R  L  +  + E K  I     L+  
Sbjct: 14  VSQENKNLVKDFLIEKKSQ-GKAASTLQQYSWDLRIILFLIHEHFENKKLI----DLTRK 68

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRN-LKKSNSLP 126
           +IR      +   + +  +   +S ++S L++           +    +R   K      
Sbjct: 69  DIRNLSIIFQEMGMSNARVNGLMSALRSALEFCADDDDYDYEFNVGSRVRGLPKNPIRDI 128

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             + E Q   L+D +L              +  L L Y    R +E   +  + + +   
Sbjct: 129 TFITEDQINWLIDELLEQEK-------YMLATYLALSYYSAARKNEVYQVQKEGLTEQYY 181

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           T  ++GK  K   +     V++ I  Y +    D   ++ + +++    K LN  VF  +
Sbjct: 182 TNVVRGKRGKKFRLYYNHRVQQCIRLYINQRGKDTIPDLFVRVYKNGERKRLNKSVFNYW 241

Query: 247 IRQLRRYL----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                + L    G       H  RHS   +L   G  L  ++S+  H  +STT+ Y    
Sbjct: 242 CEIFAKMLNEKEGKGFKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTESYLK-- 299

Query: 303 SKNGGDWMMEIY 314
                + + EI+
Sbjct: 300 -DRSEEDIAEIF 310


>gi|84060800|ref|YP_444002.1| phage integrase [Escherichia coli]
 gi|83743382|gb|ABC42260.1| phage integrase [Escherichia coli]
          Length = 304

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 94/269 (34%), Gaps = 31/269 (11%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSLK 89
            +  T+ +Y      +L F            T        +  ++    T +++   +++
Sbjct: 30  CAPNTIDAYARGVNDWLAFCHSV------ALTAAVAGRDTVALYVRSLHTGRQLAAATIR 83

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRN----------LKKSNSLPRALNEKQALTLVD 139
             L+ ++ +  +L +  I   + +               +     LP   ++ + L  ++
Sbjct: 84  HRLTVVRLYNDWLCEEGIRERNPVRRGVWKNGGKGKAGIVPLQRRLPWIPDDAEWLRFLE 143

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDK 196
                        D R   +L L Y CGLR  E  ++   +I   Q  L ++    K   
Sbjct: 144 V--------AGQADIRTRFMLALAYDCGLRREELCTVATGDIDPSQRLLTVRAEHTKNRF 195

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK--PLNPGVFQRYIRQLRRYL 254
            R+VP  P   +    +        +    L L R  R +  P++   + + +R L    
Sbjct: 196 GRVVPYSPVTGELYTAWLTERRMLSSSRGPLFLSRSPRNRAEPISNWTWSKVVRGLAIKA 255

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
            LPL  + HT RH   T L   G D+  I
Sbjct: 256 DLPL-ISTHTFRHLCLTELARVGWDIHEI 283


>gi|33322355|gb|AAQ06901.1|AF496235_1 integrase/recombinase [Lactobacillus delbrueckii subsp. lactis]
          Length = 106

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 38/99 (38%), Positives = 56/99 (56%), Gaps = 4/99 (4%)

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
           N      +F    G+P++     + ++Q+ +  GL      H LRHSFAT +L+NG DLR
Sbjct: 11  NEPDTEAVFLNKLGRPISSRGIAKAVQQIFQKAGLTAGAHPHELRHSFATAMLNNGADLR 70

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           S+Q +LGH  LSTTQIYT+V+ ++    +   Y Q  P 
Sbjct: 71  SVQELLGHEDLSTTQIYTHVSMQH----LTAEYRQHFPR 105


>gi|323480978|gb|ADX80417.1| phage integrase family protein [Enterococcus faecalis 62]
          Length = 392

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 65/329 (19%), Positives = 131/329 (39%), Gaps = 47/329 (14%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q W +     R L++  + +Y+    Q  I   +   +K     +  LS  E++ F+   
Sbjct: 66  QKWFEYY---RSLNEQKVATYDKREEQVKILNRWIGGKK-----LSSLSSEELQKFLFIL 117

Query: 79  RTQ-------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           + +            SL+  +  +     Y KK+ +  E+ +  ++  K   SL + L E
Sbjct: 118 KEKEIDGVNVGYAKNSLQSLVQVLNMVFNYCKKKNLINENPMKFVKMPKYQLSL-KDLKE 176

Query: 132 -----KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
                +    +VD +    ++   + +   S + ++L+  G R+SEAL+L PQ+I  +++
Sbjct: 177 SVNSLEDKFLIVDELRAFLNYGIVYEELPMSVLFHVLFYTGCRVSEALALQPQDIDFERN 236

Query: 187 TL---------------RIQGKG--DKIRIVPLLPSVRKAILEYYDLCPFDLNLN----I 225
            +               RI+        R VP+ P V + + E  D+       +     
Sbjct: 237 EILFYKQTAVKGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRNSNFVVD 296

Query: 226 QLPLF----RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
           +  LF     G RG P        ++++     G+      H  RH+ A+ L++      
Sbjct: 297 ETYLFVYLDPGKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMAS-LVAEYCSWD 355

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            ++  LGH   +T++IY ++ S      +
Sbjct: 356 VLKDRLGHTDSTTSKIYRHLTSTEKLKPL 384


>gi|299145868|ref|ZP_07038936.1| integrase [Bacteroides sp. 3_1_23]
 gi|298516359|gb|EFI40240.1| integrase [Bacteroides sp. 3_1_23]
          Length = 379

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 50/300 (16%), Positives = 107/300 (35%), Gaps = 36/300 (12%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++++    ER ++  T Q  +C  +    F          I+    +    IRA+    +
Sbjct: 110 SFMEKRIYERQVTDSTKQRQKCVLKALKEFGR--------IKDFTDICDENIRAYDEFAK 161

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +     S+      +K F++      + +E+   N +  +      R L +++ + L  
Sbjct: 162 KRCKCQSSVYNYHKILKVFVREAYAAHLISENPYQNFKLDRGKRVARRFLTKEELVKL-- 219

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDK 196
                T         R   +       GL  ++      ++ +      RI+    K   
Sbjct: 220 ----ETKQIDDMCLNRVRDLFLFCCYTGLAYADLAIFNFKDAIMTDGMYRIRDERIKTGT 275

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
              + L+  V   + +Y            +LP+        ++   +  Y++ L  +  +
Sbjct: 276 PYNISLMDKVMNILKKY----------EFKLPV--------ISNQKYNSYLKILGAFCEI 317

Query: 257 PLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
               T+H  RH+FAT   L+NG  +  I  +LGH  + TTQ+Y ++           + +
Sbjct: 318 KKKLTSHVARHTFATTVALANGVRIEVISKMLGHTNIQTTQLYAHIYQAEVDKEFERLNN 377


>gi|225018198|ref|ZP_03707390.1| hypothetical protein CLOSTMETH_02136 [Clostridium methylpentosum
           DSM 5476]
 gi|224948995|gb|EEG30204.1| hypothetical protein CLOSTMETH_02136 [Clostridium methylpentosum
           DSM 5476]
          Length = 348

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 56/322 (17%), Positives = 118/322 (36%), Gaps = 34/322 (10%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           + FE+   +Q + +  E++  L + T+  Y     +    L     +KIT++ +++  + 
Sbjct: 16  IKFEVF-AKQWFKEYAEVK--LRERTIARYRQLEARTYAALGHLHMDKITVRHVQKFIHN 72

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
                I++    ++  +++   LS + +   Y  K ++   +   +++  K         
Sbjct: 73  LGEEGINQTTGGRLAPKTIHHYLSFVSTIFSYAIKMQMVKNNPCEHVQLPKAEQKELDCY 132

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
             ++A   ++  LL           +  A   L    G R  E L L  ++I      + 
Sbjct: 133 TLEEAQEFLN--LLQKEP------LKYQAFFTLAIYGGFRKGELLGLEWKDIDFSTGVIS 184

Query: 190 IQ----------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----- 228
           I+                      R + +   V + +  Y     FD             
Sbjct: 185 IRRSSLYTKGKGTFTDTTKTKSSQRSLKIADEVLQVLKRYQSQQIFDRARVGDQWVDTDR 244

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           LF    G+P++P     ++++     G       H  RH  AT L++N  D ++I + LG
Sbjct: 245 LFTKWNGEPMHPNSPYTWLKRFCERTG-QRFLGVHQFRHLNATLLINNRVDAKTISASLG 303

Query: 289 HFRLST-TQIYTNVNSKNGGDW 309
           H ++ST   IY +   ++    
Sbjct: 304 HTQVSTPLNIYAHTFQESQAKA 325


>gi|46019877|emb|CAE52406.1| putative tyrosine integrase [Streptococcus thermophilus]
          Length = 398

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 47/299 (15%), Positives = 104/299 (34%), Gaps = 38/299 (12%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           R +L  +     + +  ++I  +  ++ +++  +        +S+      +K+      
Sbjct: 107 RHYL--MKILNNDPLGAKSIDMVKLSDAKSWAIRMSEDGCAYKSIDNYKRSLKASFFMAI 164

Query: 104 KRKITTESNI-LNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
           +     ++     + ++ +  + P+ AL  +Q + L+  +    S +T      +  I  
Sbjct: 165 QDDCIRKNPFDFQLSDVLEDKTEPKIALTPEQEMDLLSFME---SDKTYCKYYDDVVI-- 219

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPS 205
            L   GLRISE   LT  ++      + +                       R +P+   
Sbjct: 220 -LLETGLRISELCGLTL-DLDMKNKAIMVDHQLLSDTNIGYYVEVPKTAQGKREIPMTER 277

Query: 206 VRKAILEYYDLCPFDLNL-----NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP--- 257
             +A+    +               Q  LF    G P     +Q  ++ L +        
Sbjct: 278 AYQAVKRVVERRKKAKAEPIVIDGYQNFLFLKRDGLPKQATNYQSMLKSLVKKYNKTHED 337

Query: 258 --LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
                T HT RH+F T++ + G     +Q I+GH  ++ T   Y + +  +    M  +
Sbjct: 338 KLPKITPHTFRHTFCTNMANKGMSPNILQYIMGHKNITMTLGYYAHASFSSARAEMERL 396


>gi|315148958|gb|EFT92974.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4244]
          Length = 309

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 84/213 (39%), Gaps = 21/213 (9%)

Query: 103 KKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
               + +++    +    +  +   S  + LN+ +   L+  + L       W       
Sbjct: 90  VDEGLISKNPTRKIVIKGKAPRPKKS--KFLNQFEVQALLKELELGEQLNWDW------- 140

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212
            + L+   GLR SEAL+LTP++    +  + I+   +         S       RK  ++
Sbjct: 141 FILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGFFQSTKNESSKRKVQID 200

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +     F   +    P+        +        ++ L +   + +  T H+LRH+ A+ 
Sbjct: 201 WQTAMQFSQLIRNMPPMEPIFVKGRVFNSTINSRLKVLCKRAQISV-ITVHSLRHTHASL 259

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           LL  G  + S+ + LGH  ++TTQ  Y ++  +
Sbjct: 260 LLFAGVSIASVATRLGHSSMTTTQETYLHIIQE 292


>gi|148727179|ref|YP_001285625.1| putative integrase [Aeromonas phage phiO18P]
 gi|110349314|gb|ABG73202.1| putative integrase [Aeromonas phage phiO18P]
          Length = 350

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 52/279 (18%), Positives = 104/279 (37%), Gaps = 46/279 (16%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR---------RTQKIGDRSLKRSLSG 94
           R  L++L    +  I      + +     A+  +R         + +++   ++ R    
Sbjct: 87  RDKLVWLCEALDNPIA----TEFTSELFSAYRERRLAGELYVPGQRKQVTPTTINREQLY 142

Query: 95  IKSFLKYLKKRKITTE-SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
           +++    L +  + +  + + ++R  K   S    L++ +   L+D              
Sbjct: 143 LQAVFNELARLGVWSGGNPLADLRQYKVQESELAYLSQDEIEQLLDACKEQRDL------ 196

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
                I+ L    G R SE   ++   I   + T   + KG + R VP+ P +   +   
Sbjct: 197 ---WLIVMLCLSTGARWSEIEKVSRSQIGMGRITFT-KTKGKRNRTVPVAPWLLAML--- 249

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATH 272
                               R   L    +  + + +RR  + LP   + H LRH+FA+H
Sbjct: 250 ------------------PRRTGRLFDDCYADFEKAIRRAGIKLPAGQSTHVLRHTFASH 291

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            + NGG++  +Q ILGH  +  T  Y +    +  D + 
Sbjct: 292 FMMNGGNILVLQRILGHTDIKMTMRYAHFAPDHLEDAVR 330


>gi|325284720|ref|YP_004264183.1| integrase family protein [Deinococcus proteolyticus MRP]
 gi|324316209|gb|ADY27323.1| integrase family protein [Deinococcus proteolyticus MRP]
          Length = 334

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 52/289 (17%), Positives = 104/289 (35%), Gaps = 29/289 (10%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  T+++Y+  TRQF+ +            ++ +      + +++    Q      ++  
Sbjct: 64  SPRTVEAYQLGTRQFVEYAEQ------NAVSLLKPGRHMAQGYVNWMLAQGRKPAGVQLK 117

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLK-----KSNSLPRALNEKQALTLVDNVLLHTS 146
           ++      + L+    T      ++R  K          P    E +   +++       
Sbjct: 118 VAAAGCLYRALRWAGATEADPFRDVRVPKDRTPGIIKRPP--YTESEIADVLEG------ 169

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS 205
                 D     +L++    GLRISEAL+L   +I +D   + ++ GKG K R+V +  S
Sbjct: 170 -----ADVHIRFLLFVTAHGGLRISEALALEWDDIDEDARRIHVRSGKGRKARMVAMSQS 224

Query: 206 VRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAH 263
           + +A   Y     P               R          + ++ +  +  G+      H
Sbjct: 225 LSEAARAYRVTHGPGGPEFGAGRRATPPQRVFRYGTAPTARYHLERAFKAAGVEFR-GFH 283

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI-YTNVNSKNGGDWMM 311
             R    T LL    D   + + LGH  + TT+  Y  + + +  D + 
Sbjct: 284 PGRKYAGTRLLQQIKDFGRVAAHLGHESVDTTRKGYARLAADDLKDDLA 332


>gi|315223979|ref|ZP_07865823.1| integrase [Capnocytophaga ochracea F0287]
 gi|314946083|gb|EFS98088.1| integrase [Capnocytophaga ochracea F0287]
          Length = 411

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 54/313 (17%), Positives = 108/313 (34%), Gaps = 31/313 (9%)

Query: 9   IVSFELLKERQNWLQN--LEIERG-LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           ++   LLK  + + ++  L +E+G  S  TL  YE        F+ +      +  + ++
Sbjct: 108 VMEDSLLKVYEKFKEDFALMVEKGVRSYSTLNKYENVYTHLSEFIQYKYRR--SDISFKE 165

Query: 66  LSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L+   I  F    R  K +   ++   +  +   ++    + I   +   N  +  +   
Sbjct: 166 LTEDFINDFDFYLRVNKSLTHNTIWVYMMPLCKMVEIAIDKGIIYRNPFKNYISSMEEKD 225

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN---- 180
               L  ++  TL+       S E          +       G    +   L   +    
Sbjct: 226 R-GYLLREEVETLLQYHPKSASVELV------RDLFVFSCFTGFSYIDIKQLKKSHLQSF 278

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
              ++  ++ + K D    V LL    K I +Y               LF        + 
Sbjct: 279 FDGNKWLIKRRQKSDVPCNVRLLDIAEKIIEKY-------EGTTRTEALFPTP-----SN 326

Query: 241 GVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                 I+++ +   +      + H  RH+F T  L+ G  L S+  ++GH  + TTQIY
Sbjct: 327 ANCNLLIKKMMKDCNIIREKPISFHWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIY 386

Query: 299 TNVNSKNGGDWMM 311
             + ++     M 
Sbjct: 387 AKITNEKISKDME 399


>gi|265756479|ref|ZP_06090685.1| transposase [Bacteroides sp. 3_1_33FAA]
 gi|263233667|gb|EEZ19282.1| transposase [Bacteroides sp. 3_1_33FAA]
          Length = 409

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 61/288 (21%), Positives = 114/288 (39%), Gaps = 25/288 (8%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSLK 89
             K TL +Y+       +F+              +L    IR ++      + +   +++
Sbjct: 129 YKKGTLPNYQYTRLTLGLFVKKRYG--TDDVAFGELYEQFIREYMDFCLDERGLALDTVR 186

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             L+ +K   +   K   +   + ++ +  +K  + P+AL  +  L + D   L      
Sbjct: 187 HYLAILKKTCRIAFKAGHSERYHFMHFKLPQKKENPPKALTREDFLKIRD---LEIPERR 243

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGDKI-RIVPLLPS 205
           K +       L+  Y  G   ++ +S+T +N+  D+     L+   K +K+   V LLP 
Sbjct: 244 KSLALTRDLFLFACY-TGTAYADTVSITEENLFRDEEGSLWLKYHRKKNKMLARVKLLPE 302

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
               + +Y D     L    +  + RG              ++ LR   G+ +    H  
Sbjct: 303 ALSMLEKYKDPTRPTLLPPQEFRVLRGN-------------MKSLRVLSGISMDLVYHVG 349

Query: 266 RHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           RHSFA+ + L  G  + +I  +LGH  + TTQIY  V  K   + M +
Sbjct: 350 RHSFASLVTLEEGVPIETISRMLGHNNIQTTQIYARVTPKKLFEDMDK 397


>gi|228946143|ref|ZP_04108478.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228813556|gb|EEM59842.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 386

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 62/301 (20%), Positives = 112/301 (37%), Gaps = 37/301 (12%)

Query: 24  NLEIERGLSKLTLQSYECDTRQF-------LIFLAFYTEEKITIQTIRQLSYTEIRAF-- 74
           + + E+ +   +   Y  D  QF       L FL    ++    Q  R L    IR +  
Sbjct: 72  HFDQEKRIKDASRTLYARDLSQFYFFIKQSLEFLQKDVKDYKVGQVWRNLRKRHIRNYQK 131

Query: 75  ------ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN--LKKSNSLP 126
                 IS +   K    ++ R L  I+S+LK+L   +   +   + + +  + K +   
Sbjct: 132 WLSQEAISYQSKNKYKPSTISRKLGVIRSYLKWLYDIQYIQDPLHVEILSTTVNKQHKPK 191

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-- 184
           R L+ ++   L+              +  N A+L +L   GLR++E       ++  D  
Sbjct: 192 RELSYEEVKQLLHYYK---------DNEINYALLSVLATTGLRVAEVAHAKWDDLEYDAI 242

Query: 185 --QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNP 240
             +  L++  KGD  RIV +   +   I  +      P D+       +F+         
Sbjct: 243 RGRYYLKVDTKGDNERIVSINKEIFNRIAAFRMRRRLPIDIGNRNGGTVFQTKNHTAYRE 302

Query: 241 GVFQRYIRQLRRYLGLPL----STTAHTLRHSFATHLLS-NGGDLRSIQSILGHFRLSTT 295
               +YI ++ +   LP       T H  RH +  +L    G     I + +GH    TT
Sbjct: 303 NYLSQYISKIIKDTQLPFTENIRITPHFFRHFYVQYLYDYKGLPPHIIAAAVGHKNDRTT 362

Query: 296 Q 296
           +
Sbjct: 363 K 363


>gi|217980190|ref|YP_002364240.1| integrase family protein [Thauera sp. MZ1T]
 gi|217508361|gb|ACK55146.1| integrase family protein [Thauera sp. MZ1T]
          Length = 182

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 65/174 (37%), Gaps = 9/174 (5%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L  ++   L+      T+      + R+  ++ L++  GLR+SEA +L    +  +  
Sbjct: 5   KHLTSREVERLI------TATRGSRTELRDRCLILLMFRHGLRVSEACALKLHQVDLESR 58

Query: 187 TLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            L + + K       PL     +AI  +                F   R  PLN      
Sbjct: 59  VLHVARLKKGLSTTHPLRGDELRAIKAWLTERARLGPAGDTF--FVSERRAPLNRRTAWV 116

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            IR+      L +    H LRH+    L   G D R IQ  LGH  +  T  YT
Sbjct: 117 AIRRYGELAELSVEAHPHMLRHACGYALADQGADTRLIQDYLGHRNIQHTVRYT 170


>gi|154000952|gb|ABS57044.1| integrase [uncultured bacterium]
          Length = 158

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 48/89 (53%)

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +     F  + +   P    +R   +    FQR  ++     G+    T HTLRHSFAT 
Sbjct: 70  WPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATA 129

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 130 LLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|168262786|ref|ZP_02684759.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|205348507|gb|EDZ35138.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 345

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 57/302 (18%), Positives = 109/302 (36%), Gaps = 49/302 (16%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR--- 78
           L +L  ER    +TL     D  +    +  + +E +      + +     A+ +KR   
Sbjct: 68  LIHLWFERH--GITL----RDGEKRKSAM-LWADECMGSPMATEFTAQLFTAYRAKRLDG 120

Query: 79  ------RTQKIGDRSLKRSLSG-IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
                 R  ++  R++    +  +  F +  +  +    + + N+R  +   S    L  
Sbjct: 121 HFARTKRVTQVSPRTMNLEHAYFLAVFNELKRLGEWDAPNPLENVRQFRTEESEMAYLTG 180

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           +Q   L++     ++ + +        I+ +    G R  EA  L    I   + T  I+
Sbjct: 181 EQIDRLLEESRHSSAKDLE-------MIVRICLSTGARWGEAEKLKRSQIGAGKVTF-IK 232

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            KG + R +PL P++   +                  LF                 R   
Sbjct: 233 TKGKRNRTIPLDPAIIAEL------------PKKNGVLFSPCYY----------AFRSAL 270

Query: 252 RYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
              G+  P     H LRH+FA+H + NGG++  +Q ILGH  +  T  Y +    +  + 
Sbjct: 271 ERAGIELPAGQLTHVLRHTFASHFMMNGGNILVLQKILGHTDIKMTMRYAHFAPNHLEEA 330

Query: 310 MM 311
           + 
Sbjct: 331 LK 332


>gi|82546659|ref|YP_410606.1| tyrosine recombinase [Shigella boydii Sb227]
 gi|81248070|gb|ABB68778.1| FimB [Shigella boydii Sb227]
 gi|320186175|gb|EFW60916.1| type 1 fimbriae regulatory protein FimB [Shigella flexneri CDC
           796-83]
          Length = 200

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 66/181 (36%), Gaps = 8/181 (4%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K  N     L   +  +L+       +  T    ARN  +  L +  G R SE   L   
Sbjct: 4   KADNKKRNFLTHSEIESLL------KAANTGPHAARNYCLTLLCFIHGFRASEICRLRIS 57

Query: 180 NIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           +I      + I   K       PLL    +A+  +  +     +   +  +F   +G PL
Sbjct: 58  DIDLKAKCIYIHRLKKGFSTTPPLLNKEVQALKNWLSIRTSYPHAESE-WVFLSRKGNPL 116

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +   F   I       GL L    H LRHS    L + G D R IQ  LGH  +  T  Y
Sbjct: 117 SRQQFYHIISTSGGNAGLSLEIHPHMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWY 176

Query: 299 T 299
           T
Sbjct: 177 T 177


>gi|186683565|ref|YP_001866761.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186466017|gb|ACC81818.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
          Length = 193

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 74/179 (41%), Gaps = 10/179 (5%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             L  ++      N +L  +        RN A++ L++  GLR+SEA  L    I     
Sbjct: 14  EYLTVREV-----NSILRGAKVYGRYKVRNYALVLLIFRHGLRVSEACDLRWDAISFLDE 68

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            + I  K        + P     I     L   ++  N    +F G RG+ L P   QR 
Sbjct: 69  EIFITRKKGSD--SGVHPLPVDEIEALKQLKELNIGGN---YVFIGERGERLTPAAVQRL 123

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           + +L     L +    H LRH+   +L++ G   R IQ  LGH  +  T+ YT VNSK 
Sbjct: 124 LTRLGEVAELNIKIHPHQLRHACGYYLVNEGHSTRFIQEFLGHRDIRHTEKYTKVNSKR 182


>gi|24496458|gb|AAN60213.1| integrase [Salmonella enterica subsp. enterica serovar Albany]
          Length = 183

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 87/202 (43%), Gaps = 28/202 (13%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLPTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLPS 205
             T+ ++ GKG K R + L  S
Sbjct: 162 HGTIIVREGKGSKDRALMLPES 183


>gi|89147500|gb|ABD62610.1| integrase [uncultured bacterium]
          Length = 163

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 35/93 (37%), Positives = 47/93 (50%)

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           A  E+     F        P     R   L+    Q+ ++      G+    T HTLRHS
Sbjct: 70  AAREWSWQYVFPSTRLSVDPRSGKTRRHHLHETGVQKMVKAASVRAGITKRVTVHTLRHS 129

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           FATHLL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 130 FATHLLEAGYDIRTVQELLGHSDVSTTMIYTHV 162


>gi|225389817|ref|ZP_03759541.1| hypothetical protein CLOSTASPAR_03565 [Clostridium asparagiforme
           DSM 15981]
 gi|225044127|gb|EEG54373.1| hypothetical protein CLOSTASPAR_03565 [Clostridium asparagiforme
           DSM 15981]
          Length = 409

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 59/321 (18%), Positives = 112/321 (34%), Gaps = 47/321 (14%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            L   T  +YE       ++  +  +E      +  +  ++I  F +K   +     SL+
Sbjct: 84  QLKASTRANYEY------LWSNYVKDEPFANIPLPNIRKSDILTFYTKLLKKGFAINSLE 137

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
              + +   L+         ++    +    K+    +   ++ ALT+            
Sbjct: 138 NINNLVHPALELAVDDDYIRKNPSKGVYRSLKAEGAGKPAKKRIALTMTQQKNFLRFISK 197

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----------------- 192
             + +    ++ +L G GLR+ E   LT  ++  + +T+ +                   
Sbjct: 198 SPMYSHWLPVMVVLLGTGLRVGECTGLTKNDVDLENNTISVNHNLIYRVIDGEAGFHITT 257

Query: 193 -------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQ 244
                  +   I    +   +R  I     L P DL +N     LFR   G  L+     
Sbjct: 258 PKTASGTRTIPILYPQVAEQLRALIEVMDALYPEDLVMNGYHGFLFRNRSGYFLSAHNIN 317

Query: 245 RYIRQLR---------------RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           R I ++                R   L    + H LRH+F T L     D++ IQ ++GH
Sbjct: 318 RAIERISIAYNAEEMDQAELEDREPNLLPHFSVHNLRHTFCTRLCEKTNDIKFIQQVMGH 377

Query: 290 FRLSTTQ-IYTNVNSKNGGDW 309
              STT  IYT++  ++  + 
Sbjct: 378 ADFSTTMDIYTHITQESMKEK 398


>gi|82751481|ref|YP_417222.1| integrase [Staphylococcus aureus RF122]
 gi|82657012|emb|CAI81449.1| integrase [Staphylococcus aureus RF122]
          Length = 354

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 100/284 (35%), Gaps = 15/284 (5%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T ++Y         F  F   E I+   +  L+ T  R FI           ++++  + 
Sbjct: 73  TDKAYATFKNAINQFKTFLEVENISNLVLSDLNTTFYRKFIKW-YGSNHSTETVRKIHNC 131

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +K  +    +  +  +     +       ++P    E++ +++ D + L        I +
Sbjct: 132 LKQPIDDAIQEGLIHKDPTYKVV---VKGTIPAQREEEKFMSIKDFINLKEYVSNTPIQS 188

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK--IRIVPLLPSVRKAILE 212
                +Y+L   G R  E   L   ++     T+ + G   +   R V +  +  K +  
Sbjct: 189 --YLFIYILIITGGRFGEVQRLCTSDLDYKNCTIHLPGTKTETSDRTVDIPQNDMKILKN 246

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                P  L   +            +      + +++      +    T H++RH+  ++
Sbjct: 247 TLAEMPISLTTQLF-----NTGTSLITHNAVTKVMQRYCLEKRIGKY-TLHSIRHTHCSY 300

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYD 315
           LL N   +  I   LGH  + TT  +Y+++  +       +  D
Sbjct: 301 LLHNDVSIYYISKRLGHKSIKTTMDVYSHLLDEIEQKEKEKALD 344


>gi|326336802|ref|ZP_08202957.1| integrase [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691030|gb|EGD33014.1| integrase [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 324

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 54/313 (17%), Positives = 108/313 (34%), Gaps = 31/313 (9%)

Query: 9   IVSFELLKERQNWLQN--LEIERG-LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           ++   LLK  + + ++  L +E+G  S  TL  YE        F+ +      +  + ++
Sbjct: 21  VMEDSLLKVYEKFKEDFALMVEKGVRSYSTLNKYENVYTHLSEFIQYKYRR--SDISFKE 78

Query: 66  LSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L+   I  F    R  K +   ++   +  +   ++    + I   +   N  +  +   
Sbjct: 79  LTEDFINDFDFYLRVNKSLTHNTIWVYMMPLCKMVEIAIDKGIIYRNPFKNYISSMEEKD 138

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN---- 180
               L  ++  TL+       S E          +       G    +   L   +    
Sbjct: 139 R-GYLLREEVETLLQYHPKSASAELV------RDLFVFSCFTGFSYIDIKQLKKSHLQSF 191

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
              ++  ++ + K D    V LL    K I +Y               LF        + 
Sbjct: 192 FDGNKWLIKRRQKSDMPCNVRLLDIAEKNIEKY-------EGTTRTEALFPTP-----SN 239

Query: 241 GVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                 I+++ +   +      + H  RH+F T  L+ G  L S+  ++GH  + TTQIY
Sbjct: 240 ANCNLLIKKMMKDCNIIREKPISFHWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIY 299

Query: 299 TNVNSKNGGDWMM 311
             + ++     M 
Sbjct: 300 AKITNEKISKDME 312


>gi|300726814|ref|ZP_07060244.1| integrase [Prevotella bryantii B14]
 gi|299775927|gb|EFI72507.1| integrase [Prevotella bryantii B14]
          Length = 404

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 98/288 (34%), Gaps = 29/288 (10%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSLKRSLSG 94
           +  Y         F+      K++     QL+   I  F           + +     + 
Sbjct: 129 IHGYHSTRIHLQKFIQRKY--KVSDLAFSQLTENFIHEFRQYFLGECGFQESTFYNVATH 186

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +K+  +   +  +         +  K    LP+AL+      L +        + +    
Sbjct: 187 LKTVCRLAYREGLADTLLFDKAKISKGDKKLPKALDRAALDKLKELCFDDLEEDLETA-- 244

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRI---QGKGDKIRIVPLLPSVRKAI 210
               I       G    + + L   + + DD+ +L +   + K   +  + LLP   + I
Sbjct: 245 --RDIFLFACYTGAAYCDLMELNRSHFVRDDEGSLWLKFNRQKTGVLCRIKLLPEAVRLI 302

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            +Y       L                +    +Q  ++ LR   G+    T HT RH+FA
Sbjct: 303 AKYRSDERETL-------------LPYIKYKSYQTCLKSLRLRAGISFPFTTHTARHTFA 349

Query: 271 THL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           T + L  G  + ++  +LGH  +S T+ Y  V  +     + E +D+ 
Sbjct: 350 TLITLEQGVPIETVSKMLGHSNISMTERYAKVTPQ----KLFEEFDRF 393


>gi|238023317|ref|YP_002907550.1| Phage integrase family protein [Burkholderia glumae BGR1]
 gi|237880370|gb|ACR32700.1| Phage integrase family protein [Burkholderia glumae BGR1]
          Length = 564

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 73/397 (18%), Positives = 130/397 (32%), Gaps = 80/397 (20%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
            N  P         +       L    G +  T ++Y  +  +F+++     E    + +
Sbjct: 176 ANRAPAFPYISAAHDLDAVFAYLHRYDGQAA-TQRAYWRELERFVLWCVL--ERGRPMSS 232

Query: 63  IRQLSYTEIRAFIS----------KRRTQK---------IGDRSLKRSLSGIKSFLKYLK 103
           I        +AF++            R            +   S + ++  +++   +L 
Sbjct: 233 ILVDDCEAYKAFLANPSDTFRGPPASRASGRWRPFALTPLSLDSQRYAVRTLRAAFDWLV 292

Query: 104 KRKITTESNILNMRNLKKSNS-----LPRALNEKQALTLVDNVLLHTSHETKWIDAR--- 155
           K +    +  + + + K         + RAL      + V   L   +            
Sbjct: 293 KVRYLAGNPWVAVTDPKPVKRATKLQVQRALPID-VWSRVRAELAERAEGLGPQGPDWRV 351

Query: 156 NSAILYLLYGCGLRISEAL--------SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
             A++ L+   GLRI EA+            ++       LR+ GKG K RIVPL     
Sbjct: 352 ARALVLLMGDAGLRIEEAVTVERGGLQWWPAEDETPASWMLRLIGKGSKERIVPLTEDTV 411

Query: 208 KAILEYYDLCPFDLNLN----IQLPLFRGIRGKP---------------------LNPGV 242
            A+ E++     DL+        +PL       P                       P  
Sbjct: 412 AALREHWQDRGLDLDAPGAAADSVPLVAPTVVPPTPASREKFGVTDAGEVTRAAGYTPRA 471

Query: 243 FQRYIRQLRRYL--GLPL----------STTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
            +R + +  R L   LP           +T+ H  RH+F T   + G  +  +Q +LGH 
Sbjct: 472 ARRVVTRALRRLLEQLPDWEESARRQLAATSPHAFRHTFGTQSAAAGMAIEVLQQVLGHG 531

Query: 291 RLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
            L TT IY N   +     M +   + H  +  +  K
Sbjct: 532 SLQTTTIYVNAEQQR----MRQESAKYHARLAARRAK 564


>gi|186681346|ref|YP_001864542.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186686687|ref|YP_001869881.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186686754|ref|YP_001869947.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186687046|ref|YP_001870435.1| site-specific recombinase XerD-like protein [Nostoc punctiforme PCC
           73102]
 gi|186687121|ref|YP_001870264.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186463798|gb|ACC79599.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186469106|gb|ACC84906.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186469424|gb|ACC85223.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186469572|gb|ACC85370.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186469670|gb|ACC85467.1| Site-specific recombinase XerD-like protein [Nostoc punctiforme PCC
           73102]
          Length = 304

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 52/291 (17%), Positives = 105/291 (36%), Gaps = 14/291 (4%)

Query: 27  IER-GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           +ER GL+  T ++YE      L        +K    +I  +S   +  +++     K   
Sbjct: 15  LERPGLAPSTRETYELTLGLLL--------QKYGSWSIEIISKQTLVEYLNNLSHLKYTT 66

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
               +++  ++S L +  ++     + I  ++  +            + +  +    L+ 
Sbjct: 67  HHKHQAI--LQSLLNFAVEQGYIKSNPIRGLKQ-RLPEREKGEHKSDETIRYLTQSQLNI 123

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
            +     D R S I++LL+  G RI E L+L   ++       ++ GKG+K R       
Sbjct: 124 LYSAVKDDLRLSTIVHLLHRTGCRIGELLALNIDSVDIKNQKFQVLGKGNKQRWCFYSDD 183

Query: 206 VRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
               + +Y       + N           +   ++      Y R+             H 
Sbjct: 184 AASMLAKYLKYSRHQNTNALFTAQHPVTRKVSRISYHTLHDYWRETTNKYPHLQGVRIHD 243

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           LRH+FAT  +     +  + S++GH  + TT  Y  V S+          +
Sbjct: 244 LRHTFATERVGL-ISIEELCSLMGHESIQTTLRYAKVTSQKSESAARHALN 293


>gi|317475990|ref|ZP_07935245.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316907922|gb|EFV29621.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 410

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 60/315 (19%), Positives = 114/315 (36%), Gaps = 37/315 (11%)

Query: 14  LLKERQNWLQNLEIER----GLSKLTLQSYE---CDTRQFLIFLAFYTEEKITIQTIRQL 66
           LLK  +    N E E+      ++ T   Y       R+FL     Y  E I ++ +   
Sbjct: 109 LLKLFEQ--HNAEFEKKVGHSRAQGTFTRYRTVCNHIREFLPH--TYKREDIPLKELNLT 164

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSL 125
              +   F+  R  +K    ++   +  +K  +   +       +     + + +  +  
Sbjct: 165 FINDFEYFL--RTEKKCRTNTVWGYMIALKHIVSIARNDGRLPFNPFAGYINSPESVDR- 221

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT---PQNIM 182
              L + +  TL+D  + + +HE          +       GL  S+  +LT    Q   
Sbjct: 222 -GYLTQTEIQTLMDAPMKNATHELV------RDLFVFSVFTGLAYSDVKNLTADRLQTFF 274

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           D    +  + K         L  V K I+E Y     D ++               + G 
Sbjct: 275 DGNLWIITRRKKTNTESNIRLLDVPKRIIEKYKGLARDGHVFPVP-----------SNGS 323

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHS-FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             + ++ + R  G  +  T H  RH+   T LLS+G  + ++  +LGH  + TTQIY  +
Sbjct: 324 CNKILKDIGRQCGFKVRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKI 383

Query: 302 NSKNGGDWMMEIYDQ 316
            ++     M  +  +
Sbjct: 384 TAQKISQDMETLSHK 398


>gi|257869751|ref|ZP_05649404.1| integrase [Enterococcus gallinarum EG2]
 gi|331087644|ref|ZP_08336572.1| transposase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|257803915|gb|EEV32737.1| integrase [Enterococcus gallinarum EG2]
 gi|330399823|gb|EGG79483.1| transposase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 397

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 56/311 (18%), Positives = 113/311 (36%), Gaps = 36/311 (11%)

Query: 33  KLTLQS--YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           + T ++   +   +Q    +    E+K+  ++I  +  ++ + +  + + +     ++  
Sbjct: 91  QNTQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMKDKGFSYNTINN 150

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
               +K+      +     ++      + K S  L     EK ALT      L +  +T 
Sbjct: 151 HKRSLKASFYIAIQDDCVRKNPF----DFKLSEVLENDTKEKVALTEEQEQALLSFIKTD 206

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKG 194
            +  +    + +L   GLRISE   LT  ++      + I                    
Sbjct: 207 NVYHKYYDDVLILLKTGLRISELCGLTIMDVDFIHEVVVIDHQLLKSKEQGYYIETPKTK 266

Query: 195 DKIRIVPLLPSVRKA---ILEYYDLCPFDLNLNIQLPLFRGIRGKP--------LNPGVF 243
             IR VPL     +A   +++ +      +       LF   +GKP        L   + 
Sbjct: 267 SGIRQVPLSRETIQAFQRVMKKHPKAEPFVIDGRSNFLFVNHKGKPKVAIDYNALFVRMI 326

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVN 302
           ++Y +  +         T HTLRH+F T L S   + + +Q I+GH  +S T   Y + +
Sbjct: 327 KKYNKHHKD--NPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHAS 384

Query: 303 SKNGGDWMMEI 313
                  +  +
Sbjct: 385 IDTAKSEVQRL 395


>gi|325271013|ref|ZP_08137599.1| hypothetical protein HMPREF9141_2809 [Prevotella multiformis DSM
           16608]
 gi|324986659|gb|EGC18656.1| hypothetical protein HMPREF9141_2809 [Prevotella multiformis DSM
           16608]
          Length = 334

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 59/308 (19%), Positives = 111/308 (36%), Gaps = 32/308 (10%)

Query: 16  KERQNWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           KE  ++L  +E E      +  T+ +++        F            T  Q+ Y  I 
Sbjct: 50  KEESSFLDWMEQEIDKETYTVGTIANHKATMAVLRRFKRNM--------TFTQIDYKCIC 101

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            F +  +       ++ + +   + F+      ++ T         +K  N   ++L E+
Sbjct: 102 DFENFLKGAGYAVNTIAKFMKIFRRFVNLAIDEELMTAYPFRKYH-IKTENVQKQSLTER 160

Query: 133 QALTLVDNVLLH--TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           +   + +       T  E K I              GLR S+ +++T Q++ +       
Sbjct: 161 ELKRIEEKEAREALTEEEGKVIKG-----FLFSVYSGLRFSDIVNVTKQHVKN-----IY 210

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           + K   +R+      VR  I + +          N      LF+       N       +
Sbjct: 211 RNKWVVMRMQKTDHEVRIPISKMFGGKAAAMVQENKTTTGKLFQLPCNARCN-----LVL 265

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +++ +   +    T H  RH+ AT LLS G  L  IQ ILGH  + TTQ+Y+ V      
Sbjct: 266 KRVLKRFNIHRHITFHCARHTCATVLLSKGVSLPIIQHILGHQSIKTTQVYSAVKDSTIN 325

Query: 308 DWMMEIYD 315
             + + + 
Sbjct: 326 KEIRKAFR 333


>gi|269964616|ref|ZP_06178854.1| hypothetical protein VMC_02840 [Vibrio alginolyticus 40B]
 gi|269830515|gb|EEZ84736.1| hypothetical protein VMC_02840 [Vibrio alginolyticus 40B]
          Length = 402

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 90/264 (34%), Gaps = 19/264 (7%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           L  +   K   + +  +   +I+  +     +     ++ R  S +    +   +     
Sbjct: 138 LKLHFYPKWGKKPLTDIGQQDIQKLLDGLL-EGRKPATVNRLRSLVLRMFRLAMEWGYVD 196

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
            +    +R LK++N   R L+  +  + +       +             L      G+R
Sbjct: 197 SNPGQYIRKLKENNVRQRFLSRAEVSSFIKACNEEPNRTQSNA-------LKFALLTGMR 249

Query: 170 ISEALSLTPQ----NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           I E      +    +   + S      K    R V L    ++ I +             
Sbjct: 250 IGEITGSKWECLTVDDDGNWSLFLPHTKSGLSRTVLLNNLAKEVIHD-----QRRFQQPK 304

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG-GDLRSIQ 284
              +F G           ++   ++++  G+  +   H LRHSFA+ L+++G   L  +Q
Sbjct: 305 NPYIFAGDAPGR-PIAHPKKAFARIKKAAGITDNFRIHDLRHSFASILINSGNATLYDVQ 363

Query: 285 SILGHFRLSTTQIYTNVNSKNGGD 308
            +LGH    T+  Y ++ S    +
Sbjct: 364 HLLGHQSAQTSTRYAHLASSRLRE 387


>gi|332829726|gb|EGK02372.1| hypothetical protein HMPREF9455_01642 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 407

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 50/290 (17%), Positives = 108/290 (37%), Gaps = 27/290 (9%)

Query: 34  LTLQSYECDT---RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
            +  SY       R    FL     + I    I +      + ++     +K G   + +
Sbjct: 123 NSTTSYRQSGISQRNLKEFLCSRGMKDIAFSDITEEFGESFKLYLKTIGERKSG--YINK 180

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            ++ +   +     +++   + +  +R  KK     + +++     L++     T    +
Sbjct: 181 CITWLNRLIYIAIDQEVLRSNPLEEVRYEKKEPPKHKHISKDDFKRLLE-----TPMPEE 235

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQG---KGDKIRIVPLLPSV 206
            ++    A ++     GL   +   L P +I    +  L I+    K +    +PL P  
Sbjct: 236 RLELVRRAFIFSTL-TGLAYVDIYGLYPHHIQKTSEGRLYIRKRRVKTNVEAFIPLHPIA 294

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            + ++ Y          +   P+F                I Q+   + L  + + H  R
Sbjct: 295 EQILMLYNT-------TDDSFPVFPLPV-----RDKIWYEINQIGTLINLKENLSYHQSR 342

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           HSF T LLS G  + S+  ++GH  ++TTQ+Y  +  +     M ++ ++
Sbjct: 343 HSFGTLLLSAGVSIESVAKMMGHANINTTQVYAQITEQKISQDMDKLIER 392


>gi|325680238|ref|ZP_08159800.1| type I restriction modification DNA specificity domain protein
           [Ruminococcus albus 8]
 gi|324108055|gb|EGC02309.1| type I restriction modification DNA specificity domain protein
           [Ruminococcus albus 8]
          Length = 528

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 90/210 (42%), Gaps = 20/210 (9%)

Query: 106 KITTESNILN--MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
            +          ++    ++   + L+  +   L+ ++ L++     W       ++ L+
Sbjct: 310 GLIARDPTRKVIIKGKSPNDKKKKYLSRYELQKLLTSLDLNSGLNMDW-------LILLI 362

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEYYDLCP 218
              G+R SEA+++TP +      TL +    D        P     SVRK  L++  +  
Sbjct: 363 AKTGMRFSEAIAVTPADFDFTHQTLSVNKTWDYKGEGGFQPTKNKSSVRKIRLDWQTVGQ 422

Query: 219 FDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
           F      LN   P+F   + K +        + +  + +G+P + + H LRH+ A+ LL 
Sbjct: 423 FYAIVRELNDTAPIFVS-KEKKIYNSTLNDVLERHCKAVGIP-TISVHGLRHTHASLLLF 480

Query: 276 NGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           +G  + S+   LGH  ++TTQ  Y ++  +
Sbjct: 481 DGVSIASVAQRLGHSSINTTQKTYLHIIRE 510


>gi|169343418|ref|ZP_02864422.1| phage integrase [Clostridium perfringens C str. JGS1495]
 gi|169298504|gb|EDS80590.1| phage integrase [Clostridium perfringens C str. JGS1495]
          Length = 386

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 63/325 (19%), Positives = 115/325 (35%), Gaps = 44/325 (13%)

Query: 18  RQNWL--QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            ++WL   +L  ++     T++ YE   R +++         +    I+ L+   I+ + 
Sbjct: 71  FKSWLFNTHLLDKK---PSTIERYEGLYRNYIL------NSSLGKSKIKNLNSLVIQEYY 121

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +          +LK     IK FL +L     T +    +   +K          E Q L
Sbjct: 122 NNLYKGGRSVSTLKMLHKVIKPFLLFLYNNGYTKKD-FGSKGLIKIPTEKINNEEELQVL 180

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----- 190
           TL +  +   S E      ++  I       GLR+ E L+L   N+   + TL++     
Sbjct: 181 TLEEQKIFLNSLE----GNKDKLIFMTALMTGLRLGELLNLKWSNVDLKEYTLKVDKTIK 236

Query: 191 ----------------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----L 229
                                  R+VP+  S+ K + E          L  +L      +
Sbjct: 237 RVKNIETGKTELIEQEPKTKKSKRVVPIPLSLVKDLKELKKEQNKTKLLIGELYKNNDLV 296

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F    G  L+     +  ++      L      H+LRH++AT L  N   L+++  +LGH
Sbjct: 297 FATDFGNYLDSNNINKRFKKALIKANLEPK-KFHSLRHTYATRLFENDVPLKTVSELLGH 355

Query: 290 FRLSTTQ-IYTNVNSKNGGDWMMEI 313
             +  T   Y  V        + ++
Sbjct: 356 SNIQITANTYITVLEDEKKKVINQL 380


>gi|110834215|ref|YP_693074.1| transposon protein A [Alcanivorax borkumensis SK2]
 gi|110647326|emb|CAL16802.1| Transposon protein A [Alcanivorax borkumensis SK2]
          Length = 400

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 62/362 (17%), Positives = 123/362 (33%), Gaps = 88/362 (24%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            + ++W+ +LE +  LS  T+Q+Y     +   +L    +E I I      + ++   F+
Sbjct: 27  DDIRDWIVHLE-QINLSPNTIQAYARHVARLGTYLHSNNKEIIGI------TVSDYDRFL 79

Query: 76  SKRRTQKIGDRSLKRSLS----------------------GIKSFLKYLKKRKITTES-- 111
                   G   +  +L+                       +KSF +YL  R+    S  
Sbjct: 80  EWLPYYLNGTADVSSNLAFLSPSLEPVARLSPTVNNQVHLAVKSFYRYLTGREPAFASVA 139

Query: 112 ------------NILNMRNLKKSNSLP-----------------RALNEKQALTLVDNVL 142
                         L   N ++S                     + ++ +  L L+    
Sbjct: 140 VSNRHQPVGSYKPFLEHINQRRSVRKKDPYLKGDLGAVRKKVTEKRMSPEAVLELIKACS 199

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----------QG 192
           L           R++ ++ LLY  G+RI EAL L   ++      + +          + 
Sbjct: 200 L----------VRDAFLVTLLYNTGMRIGEALGLRHADVDLADGVIWVIPRSDNENGARA 249

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKP----LNPGVFQRYI 247
           K  + R +P++P + +   +Y     +          +F  ++       L+    +   
Sbjct: 250 KSKRARAIPVMPYLLEMYEDYITSTEYLAAFESGTEYVFCNVKKGRIGKALSRSYAENLK 309

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNG 306
             L +  G     T H  RH+ A+  +++G  L ++   LGH    TT   Y ++ S   
Sbjct: 310 TYLIKRTGYTF--TWHHFRHTHASEAIADGHGLLAVADRLGHASPQTTLDFYKHLFSSEV 367

Query: 307 GD 308
             
Sbjct: 368 RK 369


>gi|260900247|ref|ZP_05908642.1| site-specific recombinase, phage integrase family [Vibrio
           parahaemolyticus AQ4037]
 gi|308107582|gb|EFO45122.1| site-specific recombinase, phage integrase family [Vibrio
           parahaemolyticus AQ4037]
          Length = 385

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 52/287 (18%), Positives = 110/287 (38%), Gaps = 16/287 (5%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           +++  D++ FL   +         + +  ++  ++  F++      +   S+ R  + + 
Sbjct: 110 RNHHRDSKTFLSR-SKRVMAAFGKERVTDVTRRDVERFLNSLTD--LSHASINRYHAFLS 166

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
                  + +I  +S +  ++   ++N+  R L+ K+  +   N            +  +
Sbjct: 167 KLFSMAVEHEIIDKSPVKGVKKRVENNAKDRVLSSKEMESFCRNACAE-------PNFLH 219

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQST-LRIQGKGDKIRIVPLLPSVRKAILEYYD 215
           ++ L L    G+RI   +SLT   + DD S+ L    K  K + +      ++ I +   
Sbjct: 220 ASALMLSLLTGMRIGNVISLTRSMLADDLSSALLPMTKSGKSQRIYFSEPAKRLIRKCLK 279

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG-LPLSTTAHTLRHSFATHLL 274
           +   D       P           P      I+Q  +  G L    T H LR ++AT +L
Sbjct: 280 VSFNDW----VFPSLNNRGEHIAYPRACMERIQQAMKQEGCLDAPFTIHDLRRTYATQML 335

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
               D+R  Q  LGH  ++ T+ Y    + +      +  D   P++
Sbjct: 336 IATNDIRLAQQSLGHSNVNVTERYAYYQNTHLAQASQQTVDAMLPNL 382


>gi|297618999|ref|YP_003707104.1| integrase family protein [Methanococcus voltae A3]
 gi|297377976|gb|ADI36131.1| integrase family protein [Methanococcus voltae A3]
          Length = 317

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 60/310 (19%), Positives = 119/310 (38%), Gaps = 28/310 (9%)

Query: 18  RQNWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEE-KITIQTIRQLSYTEIRA 73
            + +++  + ER   G++K TLQ    D  +  +FL +     K   + + +L + +   
Sbjct: 18  IEEYVERYKYERELDGIAKSTLQ---IDVTKLKVFLRYCNLTLKRKPENLTKLDFGKFFM 74

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLK---YLKKRKITTESNILNMRNLKKSNSLPRALN 130
           ++S  R  KI   +  R  + +  F K   +    +  TE                    
Sbjct: 75  YLSNER--KIAKNTEIRYYNLLVMFYKVMKFDNFEEFETECKERKRFKKFDKKHYDYVTT 132

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           +      +D +     ++  +   R++ +L  L+  G R+SE L+   ++       + I
Sbjct: 133 QD-----MDLIFQKLYNKNNYTQDRDAVLLRTLWDTGCRVSEILNSRLKDYDSKNGVIVI 187

Query: 191 QG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
              K    R V L    ++A+     +   + N N    LF+ + G+ +N     R    
Sbjct: 188 TKSKNYTERRVILANDTKEALN---YIITKNRNKNDNDYLFQKLNGEQINRNAIYRVFNA 244

Query: 250 LRR------YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             +       L        H++RH    +LL+ G +L  +   +GH R+ TT IY + N 
Sbjct: 245 CVKELKAEGKLAKNRRIVLHSIRHGCCVNLLTKGVNLDEVSRYMGHNRVETTMIYAH-NR 303

Query: 304 KNGGDWMMEI 313
           +   + +  I
Sbjct: 304 ERTNESLNNI 313


>gi|15964806|ref|NP_385159.1| putative integrase protein [Sinorhizobium meliloti 1021]
 gi|15073984|emb|CAC45625.1| Putative integrase [Sinorhizobium meliloti 1021]
          Length = 310

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 84/247 (34%), Gaps = 27/247 (10%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
               S   +   I   R +   + ++ R ++ +   L+   K            +  K  
Sbjct: 78  FSAFSQELLDGLIGALRKRGNSNATINRKMAALGKLLRKAYKMGDIHNLPEFKRQKEKAG 137

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
               R L   +   L   +   +             +   L   G R+ EA++L   +I 
Sbjct: 138 RL--RFLEADEEEVLFREIASRSELYLY--------LSIFLVDTGARLGEAIALKWNDIH 187

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           + ++T  +  K  + R VPL    + A+    D  P   +               ++   
Sbjct: 188 EGRATFWV-TKSGRSRTVPLTVRAKDALKRVADRSPGPFS--------------RIDQQK 232

Query: 243 FQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           ++      +   GL        H LRH+ A+ L+  G DLR +Q  LGH  L  T  Y +
Sbjct: 233 YRAVWNAAKVDAGLGNEDDLVPHILRHTCASRLVRGGIDLRRVQMWLGHQTLEMTMRYAH 292

Query: 301 VNSKNGG 307
           + S +  
Sbjct: 293 LASHDLD 299


>gi|254785545|ref|YP_003072974.1| site-specific recombinase, phage integrase family [Teredinibacter
           turnerae T7901]
 gi|237687332|gb|ACR14596.1| site-specific recombinase, phage integrase family [Teredinibacter
           turnerae T7901]
          Length = 325

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 94/234 (40%), Gaps = 31/234 (13%)

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           R + +   +    L+ +K+    L +       +    +R LK   +    L   Q   L
Sbjct: 112 RLKDVSANTANHDLAYLKALFNELSRLGDWHQPNPFAEIRRLKTDETELTYLERSQIDEL 171

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +       +       +    I  +    G R SEA +L P  + +++ T   + K  K+
Sbjct: 172 L-------TALDNCRGSHAGIIARVCLATGARWSEAATLKPSQVKNNKVTFS-KTKSGKV 223

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R VP+ P +   IL                PL  G          F+R + +L   L LP
Sbjct: 224 RAVPIAPELAALIL-------------NSAPLVDGY-------SAFKRTVGKL--DLELP 261

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               +H LRH+FA+H + NGG++ ++Q ILGH  +  T  Y ++  ++  + + 
Sbjct: 262 PGQLSHVLRHTFASHFVMNGGNILTLQKILGHADIKMTMRYAHLAPEHLNEAVQ 315


>gi|315221869|ref|ZP_07863781.1| site-specific recombinase, phage integrase family [Streptococcus
           anginosus F0211]
 gi|315189102|gb|EFU22805.1| site-specific recombinase, phage integrase family [Streptococcus
           anginosus F0211]
          Length = 387

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 52/310 (16%), Positives = 119/310 (38%), Gaps = 38/310 (12%)

Query: 36  LQSYECDT-----RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR---S 87
           L+SY+        R     L  +           +++   I+ FI+    + +      S
Sbjct: 84  LRSYQLTVKPQTFRATQRMLYNHLIPAFGTMKPNKITVYYIQDFINDLSKELVHYSVVHS 143

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNM---RNLKKSNSLPRALNEKQALTLVDNVLLH 144
           + R +      L+Y    ++   +   ++   +  K+ N + + +  +    L+D +   
Sbjct: 144 INRRV------LQYGVSLQLLPFNPARDVILPKVPKRENKVIKFIAPENIKALMDYM--E 195

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK-------- 196
           +    K+    +  +  +L   G R  E ++L   +I   + T+ I    ++        
Sbjct: 196 SLSNQKYGYYLDYVLYSVLLATGCRFGEVVALEWSDIDLKEKTISITKNYNRLLKLIGTP 255

Query: 197 -----IRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIR 248
                +R++ +       +  Y +      L ++ Q+P  +F     +  N    Q  + 
Sbjct: 256 KSKAGVRVISIDKKTVNMLRLYKNRQRQLFLEVDSQVPTVVFATPTKEYQNMATRQESLD 315

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGG 307
           +  + +  P   T H  RH+ A+ LL+ G   + +Q  LGH  L+TT  IY++++     
Sbjct: 316 RRLKEINCPR-FTFHAFRHTHASLLLNAGISYKELQYRLGHATLATTMDIYSHLSKDKEK 374

Query: 308 DWMMEIYDQT 317
           + +   Y++ 
Sbjct: 375 EAV-SYYEKA 383


>gi|320353143|ref|YP_004194482.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320121645|gb|ADW17191.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 393

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 51/272 (18%), Positives = 103/272 (37%), Gaps = 20/272 (7%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           ++ Y+   +     L  +    +    + +++   +       R          R L  +
Sbjct: 114 IKGYKRSWKNDDSLLRNHLLPPLGTYRMNEITQIMVADLHHGMRANGFASGMANRVLVLL 173

Query: 96  KSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
           K       K ++     +  ++++  + +    R L+ ++   L++ +    + + K+I 
Sbjct: 174 KYIFNLAIKWEVPDVKVNPAVDVKLYEATARE-RYLSIEETQRLLEQLEKSKNTQLKYIA 232

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILE 212
                 L LL GC  R  E L    +    ++ + RI   K  K R VPL  S  + + +
Sbjct: 233 P-----LLLLLGC--RKRELLDSRWEEFDLERRSWRIPMSKSGKARHVPLSLSALEILRQ 285

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                          P         L      R     R+  GLP     H LRHS A++
Sbjct: 286 LPRWEGC--------PYVIPNPDTRLPFVQMHRAWDNARKAAGLP-DVRMHDLRHSMASN 336

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           ++++G  +  +  +LGH +L TTQ Y +++ +
Sbjct: 337 MVNSGRSIYEVAKVLGHSQLKTTQRYAHLSQE 368


>gi|154000898|gb|ABS57017.1| integrase [uncultured bacterium]
 gi|154000900|gb|ABS57018.1| integrase [uncultured bacterium]
 gi|154000902|gb|ABS57019.1| integrase [uncultured bacterium]
 gi|154000906|gb|ABS57021.1| integrase [uncultured bacterium]
 gi|154000912|gb|ABS57024.1| integrase [uncultured bacterium]
 gi|154000920|gb|ABS57028.1| integrase [uncultured bacterium]
 gi|154000924|gb|ABS57030.1| integrase [uncultured bacterium]
 gi|154000928|gb|ABS57032.1| integrase [uncultured bacterium]
 gi|154000934|gb|ABS57035.1| integrase [uncultured bacterium]
 gi|154000938|gb|ABS57037.1| integrase [uncultured bacterium]
 gi|154000942|gb|ABS57039.1| integrase [uncultured bacterium]
 gi|154000946|gb|ABS57041.1| integrase [uncultured bacterium]
 gi|154000948|gb|ABS57042.1| integrase [uncultured bacterium]
 gi|154000950|gb|ABS57043.1| integrase [uncultured bacterium]
 gi|154000954|gb|ABS57045.1| integrase [uncultured bacterium]
 gi|154000956|gb|ABS57046.1| integrase [uncultured bacterium]
 gi|154000960|gb|ABS57048.1| integrase [uncultured bacterium]
 gi|154000963|gb|ABS57049.1| integrase [uncultured bacterium]
 gi|154000965|gb|ABS57050.1| integrase [uncultured bacterium]
 gi|154000969|gb|ABS57052.1| integrase [uncultured bacterium]
 gi|188526755|gb|ACD62259.1| IntI1 integrase [uncultured bacterium]
 gi|188526767|gb|ACD62265.1| IntI1 integrase [uncultured bacterium]
 gi|188526786|gb|ACD62274.1| IntI1 integrase [uncultured bacterium]
 gi|188526788|gb|ACD62275.1| IntI1 integrase [uncultured bacterium]
 gi|188526794|gb|ACD62278.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 50/94 (53%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 65  RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 124

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 125 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|154000958|gb|ABS57047.1| integrase [uncultured bacterium]
          Length = 158

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 50/94 (53%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 65  RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 124

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 125 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|296169387|ref|ZP_06851010.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895937|gb|EFG75629.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 384

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 114/361 (31%), Gaps = 70/361 (19%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
            +++    +L+ L    G S  TL+SY  D  ++  FL     +      I    ++   
Sbjct: 7   AVVESVAAFLRELLAA-GRSPATLRSYGMDLLRWWRFLGAVDVDWRRATRIEARDFSCWI 65

Query: 73  AFISKRRTQ---------------------------KIGDRSLKRSLSGIKSFLKYLKKR 105
               K R +                                ++  S + ++ F  + +  
Sbjct: 66  QLTVKHRRRPSSDQVVATVESVGPPNPVTGKAALGPGYAPATIAHSETVLRGFYDFQRDL 125

Query: 106 KI-------------------TTESNILNMR-------NLKKSNSLPRALNEKQALTLVD 139
                                   + +   +         K    +PRA+ + +  TL  
Sbjct: 126 GAGPILNPFPLDIARRSERANAHHNPMEAWKHDRVGRYRPKMPQRIPRAIPDDRFNTLF- 184

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG-DKIR 198
                    T     R+ A++      G R SE L +   ++   Q  + +  KG   I+
Sbjct: 185 ---------TALPSNRDRAMVAFWISTGARASELLGVRQCDVDPGQQLITVVRKGSRAIQ 235

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGL 256
            +P        +  Y       L      PL+  +R   +PL      R     R    L
Sbjct: 236 QLPAAADAFVWLRLYQQDLQAKLPRGRTRPLWWTLRRPHRPLTYHAAHRMFE--RANACL 293

Query: 257 PLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
               T H LRHS A  +  +    L  +Q ++GH  L+TT++Y   + +     ++  + 
Sbjct: 294 GSDWTLHDLRHSAAMRMARDPQMTLSDVQWVMGHAHLTTTELYLTPSKEEVVASVLAHHA 353

Query: 316 Q 316
           +
Sbjct: 354 R 354


>gi|282934416|ref|ZP_06339680.1| integrase [Lactobacillus jensenii 208-1]
 gi|281301537|gb|EFA93817.1| integrase [Lactobacillus jensenii 208-1]
          Length = 361

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 64/332 (19%), Positives = 122/332 (36%), Gaps = 37/332 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+   L   V+  L++  QNW+   +     +K+TL +Y+              E     
Sbjct: 47  MKQAGLKFDVNPSLVEYYQNWVDTYK----KAKVTLSTYQD-----YQLNGKRLENYFGK 97

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM---- 116
             ++ ++ +  + FI+          ++ +  + +KS ++      I T+    N+    
Sbjct: 98  TKMKNITRSAYQEFINDF-GNNHAKNTVHKLNNCVKSCVQSALYDGIITKDFTHNINISF 156

Query: 117 ---RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
              + LK        L+  Q   L++      +   K +   N  I+  LY  G R+SE 
Sbjct: 157 NADKALKVE-----YLSIAQIKALINYE----TKTRKPLRPNNYLIIAALYS-GARLSEL 206

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA------ILEYYDLCPFDLNLNIQL 227
             LT  +I    +T  I    +  R     P+  ++      + +       +L +N   
Sbjct: 207 TGLTWNDIDVYGNTFSISKTWNY-RTKQFGPTKNESSVRKISVPKKLIDLLLELKVNRSD 265

Query: 228 PLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQS 285
            +F     + L N     + +++    L +       H+LRH     LLS G  +  I  
Sbjct: 266 FVFWSATHQGLPNSHTANKALKRALDSLNIAKRDFHFHSLRHCHVAFLLSQGIPIDGIAK 325

Query: 286 ILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQ 316
            LGH  + TT  IY  +  +   +   +I D 
Sbjct: 326 RLGHANVITTMKIYAYLIDEYRNNLSNQIVDN 357


>gi|288940629|ref|YP_003442869.1| integrase family protein [Allochromatium vinosum DSM 180]
 gi|288896001|gb|ADC61837.1| integrase family protein [Allochromatium vinosum DSM 180]
          Length = 361

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 96/268 (35%), Gaps = 18/268 (6%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILN 115
           ++    +  ++  +I     +  T K    ++   L+ + S L    KR     ES + +
Sbjct: 98  ELGHLRLSDVTPAKIAGCRDELLTSK-APATVHGYLAVLASVLTTCVKRWHWVKESPMAH 156

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +     +N   R L++ +   L++      S +           + L    G R  E L 
Sbjct: 157 VDKPSVANGRTRFLSQDELSRLLEACRASESPDL-------YLAVVLAITTGARRGELLG 209

Query: 176 LTPQNIMDDQSTLRIQ-----GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-- 228
           L  +++   +  L ++          +R V +   V+  +             +I     
Sbjct: 210 LRWRDVDLVKDVLYLRVDNETTTKGGVRAVRIASQVKPILEARQAGYRRGKVADITGAAL 269

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +F         P   +   R   R  G+      H LRHS A+ + ++G  L  I ++LG
Sbjct: 270 VFPSRVSTR-QPVDLRTPFRTALRRAGIE-GFRWHDLRHSAASFMAAHGASLVEIGAVLG 327

Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           H    TT+ Y ++  +   + +    D+
Sbjct: 328 HRSAQTTKRYAHLAEQAAHELVQGTADK 355


>gi|291286542|ref|YP_003503358.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290883702|gb|ADD67402.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 399

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 110/284 (38%), Gaps = 30/284 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + WL ++E     S  T ++Y     +   + + +         + ++  + I+ +IS  
Sbjct: 94  ELWLSSIESSVAYS--TYKTYSTAVSKLSSYFSRFK--------LSEIKPSHIQQYIS-- 141

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
              ++  +++   L    S  +   +  + +++   +++  +         + ++   ++
Sbjct: 142 -NSELSAKTIANYLGVFHSIFESAVRDDLLSKNPCKHVKKPRVQTEKVDPFSIEEVSMIL 200

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D +  H  H T         I  L +  G+R+ EA++L   +I      + +Q    K R
Sbjct: 201 DWMRQHHPHMT--------IIFALGFYTGMRVGEAIALKWSDIDFKHHKIIVQRTITKNR 252

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL------PLFRGIRGKPL--NPGVFQRYIRQL 250
           I     +    +++   +    L+   Q        +     G+P      + + Y +  
Sbjct: 253 IKESTKTADYRVIDIIPMLDEYLHFQKQYTFMKSEWVTVTSYGEPFTKTQNITEDYFKPC 312

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            + LGL      + +RHSFA  +L    ++  I+++LGH  L  
Sbjct: 313 LKALGLRYRI-LNQMRHSFACMMLDAREEINWIKNMLGHSSLQM 355


>gi|215407992|emb|CAS02323.1| integron integrase [uncultured bacterium]
 gi|215407996|emb|CAS02325.1| integron integrase [uncultured bacterium]
 gi|215407998|emb|CAS02326.1| integron integrase [uncultured bacterium]
 gi|215408002|emb|CAS02328.1| integron integrase [uncultured bacterium]
 gi|215408010|emb|CAS02332.1| integron integrase [uncultured bacterium]
 gi|215408020|emb|CAS02337.1| integron integrase [uncultured bacterium]
 gi|215408022|emb|CAS02338.1| integron integrase [uncultured bacterium]
 gi|215408026|emb|CAS02340.1| integron integrase [uncultured bacterium]
          Length = 158

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 50/94 (53%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 65  RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 124

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 125 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|188526771|gb|ACD62267.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 50/94 (53%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 65  RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 124

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 125 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|315165597|gb|EFU09614.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1302]
          Length = 376

 Score =  105 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 111/302 (36%), Gaps = 40/302 (13%)

Query: 42  DTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY 101
           D R+ + F   Y  +      +++L+  E +  ++    +     S+K+  + +++ LK 
Sbjct: 85  DIRRAVDFSEKYFPD----TKLKELTRQEYQKALND-YGETHATASVKKHHTYMRAALKD 139

Query: 102 LKKRKITTESNILNMRNLKKSNSLP---RALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
             +  I   +    ++ + K N      + LN ++++ LV  +L     E       +  
Sbjct: 140 ALEEGIIHRNPTYRVQAIGKKNPKHEELKYLNYQESIHLVHEIL-----EGIKPTYTSRF 194

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-------------- 204
           I+      G R SE + +T   I     T+++    D                       
Sbjct: 195 IILFGIATGCRFSEIIGMTWDCIDFKNKTVKVNKTWDYKYTNTFSNTKNYQSKRIITIDD 254

Query: 205 ---SVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
               + K +  +         L  +  L F     + ++     + +R+  R +      
Sbjct: 255 DTLDLLKKLQLHQKEYYLKSGLRNENNLVFLNDNMELVSNTAVNKVLRKFCRKI-CTKEL 313

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGG-------DWMME 312
           T H LRH+ A+ +L  G +++ +   LGH  + TT Q Y ++  +          + M +
Sbjct: 314 TCHGLRHTHASIMLYKGINIKYVSRRLGHKDIVTTLQTYQHILDEMEQKESNAVNEVMKQ 373

Query: 313 IY 314
           +Y
Sbjct: 374 MY 375


>gi|312890070|ref|ZP_07749614.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311297602|gb|EFQ74727.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 405

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 108/289 (37%), Gaps = 22/289 (7%)

Query: 33  KLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           K TLQ YE        F+ + Y    I +  I      +   ++  R  +K G+ S  + 
Sbjct: 130 KSTLQRYETCLMHTKDFMEWQYNLSDIPVNKINFAFLNDFEYYL--RSVRKCGNNSAIKY 187

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           +  +   ++        T    LN +  K+       L +++   +            + 
Sbjct: 188 IKNLGKIVRICLGNGWLTVDPYLNYK-PKQKAVHREVLTKEELERM-----SKKKFGVQR 241

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRIVPLLPSVRKA- 209
           +D      L+  Y  GL   +   L    ++      L I     K   +  +P + +A 
Sbjct: 242 LDQVRDVFLFSCY-TGLAYVDVHKLKRSELVTGIDGGLWIHTHRQKTDTLSRIPVLSRAL 300

Query: 210 -ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            I++ Y+  P  +  +  LP+        +       Y++++     +    T H  RH+
Sbjct: 301 SIIKSYENHPECIVKDTLLPV--------MTNQKMNAYLKEIADLCRINKVLTFHIARHT 352

Query: 269 FATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           FAT + L+NG  + ++  ++GH  + TTQIY  V        M ++  +
Sbjct: 353 FATTVTLNNGVPIETVAKMMGHTSIKTTQIYAKVMDHKISSDMQQLQKK 401


>gi|309789519|ref|ZP_07684102.1| integrase family protein [Oscillochloris trichoides DG6]
 gi|308228485|gb|EFO82130.1| integrase family protein [Oscillochloris trichoides DG6]
          Length = 346

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 51/306 (16%), Positives = 107/306 (34%), Gaps = 39/306 (12%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAF------YTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
            L++ T ++ + D  ++  +LA       Y       +    +S+  I  F+  +     
Sbjct: 35  NLAEQTRRAQDADLTRWSRYLAEMGMSNSYVAWNSEPRYWAHVSWGLIEGFLQWQSNASY 94

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS--------------------- 122
              ++ RSL+ I+++     +    +   +  ++ ++                       
Sbjct: 95  SLATIARSLATIRAYCIQAARAGFISHEALALIKTVRSPSPNSRAGRNKDSERPVTRRGA 154

Query: 123 -NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
             + P  +  +QA  L         H    +  RN+ ++ LL   GLR SE   L   ++
Sbjct: 155 KKATPTPITREQARRL------RNDHHDTPVGRRNALLMCLLLDHGLRSSEVADLQVTDL 208

Query: 182 MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK---P 237
             D+  +   + K    +   L P+  +A   Y D      + ++     R    K   P
Sbjct: 209 DLDRGVICFYRRKIHLTQTHRLSPATLRAAQRYIDAGDAPKHGSLIRATARAYSHKLGGP 268

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           + P      + +L   +GL    + H  RH + +   + G D  ++Q   G   L   + 
Sbjct: 269 ITPEAISSLVSRLGVRIGL-YRLSPHDCRHYWTSRAAAAGTDPFALQEAGGWNNLEMPRR 327

Query: 298 YTNVNS 303
           Y    +
Sbjct: 328 YIKAAA 333


>gi|331650786|ref|ZP_08351814.1| type 1 fimbriae regulatory protein FimB [Escherichia coli M718]
 gi|331051240|gb|EGI23289.1| type 1 fimbriae regulatory protein FimB [Escherichia coli M718]
          Length = 200

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 66/181 (36%), Gaps = 8/181 (4%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K  N     L   +  +L+       +  T    ARN  +  L +  G R SE   L   
Sbjct: 4   KADNKKRNFLTHSEIESLL------KAANTGPHAARNYCLTLLCFIHGFRASEICRLRIS 57

Query: 180 NIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           +I      + I   K       PLL    +A+  +  +     +   +  +F   +G PL
Sbjct: 58  DIDLKAKCIYIHRLKKGFSTTHPLLNKEVQALKNWLSIRTSYPHAESE-WVFLSRKGNPL 116

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +   F   I       GL L    H LRHS    L + G D R IQ  LGH  +  T  Y
Sbjct: 117 SRQQFYHIISTSGVNAGLSLEIHPHMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWY 176

Query: 299 T 299
           T
Sbjct: 177 T 177


>gi|288801542|ref|ZP_06406990.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331523|gb|EFC70013.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 387

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 54/277 (19%), Positives = 105/277 (37%), Gaps = 25/277 (9%)

Query: 35  TLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
           TL +Y         F+   Y  E +    + +    + R F     T    + S   + S
Sbjct: 128 TLSNYHSTRSNLCTFIEEKYKVEDLAFSQLSENFIYDFRDFF--LGTLGFQESSFYGAAS 185

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            IK+  +   +  +       N + ++    LP+AL+       +D ++     E +   
Sbjct: 186 QIKTVCRLAYREGLADTLLFANAKIVRGDKKLPKALD----RCSLDKLMKIQFEELEEEM 241

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRI---QGKGDKIRIVPLLPSVRKA 209
                +       G    + + L+  +++ DD+ +L +   + K   +  + LLP   + 
Sbjct: 242 ETARDLFVFACHTGAAYCDLMELSRLHLVRDDEGSLWLKFNRQKTGVLCRIKLLPEAIRI 301

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           I +Y       L                +    +Q Y++ LR  +G+    T HT RH+F
Sbjct: 302 IEKYKSDERESL-------------LPQMKYATYQSYLKALRLRIGIAFPFTTHTARHTF 348

Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           AT + L  G  + ++  +LGH  +S T+ Y  V  + 
Sbjct: 349 ATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQK 385


>gi|187930268|ref|YP_001900755.1| integrase family protein [Ralstonia pickettii 12J]
 gi|187727158|gb|ACD28323.1| integrase family protein [Ralstonia pickettii 12J]
          Length = 351

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 50/300 (16%), Positives = 112/300 (37%), Gaps = 22/300 (7%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             + +++ + + +     T +S     +    F   Y        ++  +S   +  +  
Sbjct: 64  ALKRYMEEVSVTKK--PTTQRSERFTAQHLEAFFGKY--------SMAAVSADLVAKYRD 113

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT--TESNILNMRNLKKSNSLPRALNEKQA 134
            R      + +++  L+ +    +   +      T + + N+R         R L+  + 
Sbjct: 114 ARLAAGKSNNTVRIELAMLGHLFRTAIQEWSIGLTFNPVANIRKPSPGAGRDRRLSLDEQ 173

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GK 193
             L   V  H++    W       I+ L    G+R SE  +L    +  ++  + ++  K
Sbjct: 174 ARLFAAVSAHSNPMLGW-------IVSLAVETGMRSSEIATLRRSQVDLNRRVVTLRDTK 226

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
               R+VPL  +    +          L+ ++      G  GK   P VFQ+    + R 
Sbjct: 227 NGSARVVPLTRAAADVLQLALGNPIRPLDSDLVFFGEPGRDGKR-RPYVFQKLWASIVRD 285

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +GL      H LRH   + L+  G   + + +I GH  +   + YT++ +++  + +  +
Sbjct: 286 MGLA-DLHFHDLRHEAVSRLVEAGLSDQEVAAISGHKSMQMLKRYTHLRAEDLVEKLDAV 344


>gi|260665454|ref|ZP_05866301.1| integrase [Lactobacillus jensenii SJ-7A-US]
 gi|260560722|gb|EEX26699.1| integrase [Lactobacillus jensenii SJ-7A-US]
          Length = 364

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 64/332 (19%), Positives = 122/332 (36%), Gaps = 37/332 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+   L   V+  L++  QNW+   +     +K+TL +Y+              E     
Sbjct: 50  MKQAGLKFDVNPSLVEYYQNWVDTYK----KAKVTLSTYQD-----YQLNGKRLENYFGK 100

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM---- 116
             ++ ++ +  + FI+          ++ +  + +KS ++      I T+    N+    
Sbjct: 101 TKMKNITRSAYQEFINDF-GNNHAKNTVHKLNNCVKSCVQSALYDGIITKDFTHNINISF 159

Query: 117 ---RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
              + LK        L+  Q   L++      +   K +   N  I+  LY  G R+SE 
Sbjct: 160 NADKALKVE-----YLSIAQIKALINYE----TKTRKPLRPNNYLIIAALYS-GARLSEL 209

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA------ILEYYDLCPFDLNLNIQL 227
             LT  +I    +T  I    +  R     P+  ++      + +       +L +N   
Sbjct: 210 TGLTWNDIDVYGNTFSISKTWNY-RTKQFGPTKNESSVRKISVPKKLIDLLLELKVNRSD 268

Query: 228 PLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQS 285
            +F     + L N     + +++    L +       H+LRH     LLS G  +  I  
Sbjct: 269 FVFWSATHQGLPNSHTANKALKRALDSLNIAKRDFHFHSLRHCHVAFLLSQGIPIDGIAK 328

Query: 286 ILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQ 316
            LGH  + TT  IY  +  +   +   +I D 
Sbjct: 329 RLGHANVITTMKIYAYLIDEYRNNLSNQIVDN 360


>gi|255012361|ref|ZP_05284487.1| integrase [Bacteroides sp. 2_1_7]
          Length = 310

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 52/308 (16%), Positives = 109/308 (35%), Gaps = 40/308 (12%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +  ++L +  + ++  L  +   S    +SY+     FL F          +    ++  
Sbjct: 1   MKQYDLAEGMRMYIARLREQGRYSSA--KSYQDALNSFLRFCGQ------EVIPYTRIDR 52

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK------ITTESNILNMRNLKKS 122
             +  +    R ++    ++   +  I+       +           +   + +++ K+ 
Sbjct: 53  EMLLRYQDYLRDRECSWNTVSTYMRRIRRVYGLAMENGEAPFSRYLFKGIFMGVKS-KQK 111

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            +LP      ++L L    L+    +   +     A+  +   CG+   +   L   +I 
Sbjct: 112 KALPT-----ESLRL----LMTAPLDDSGLRKTQRALCLMFLFCGMAFVDFAHLKKSDI- 161

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
                LR   +     ++  +  V K +L           L     LF  + G       
Sbjct: 162 -RSGVLRYNRQKTGTPMLVEIQPVAKELLAALMT----DTLRDSPYLFTFLSGTKTGEEA 216

Query: 243 FQRY----------IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           F+ Y          +++L    G+    T++++RHSFAT L   G  +  I  +LGH  +
Sbjct: 217 FREYTSALADFNSSLKELANACGVTEMVTSYSIRHSFATTLKEQGVPIEMISELLGHQSI 276

Query: 293 STTQIYTN 300
            TTQIY  
Sbjct: 277 KTTQIYLK 284


>gi|311234339|gb|ADP87193.1| integrase family protein [Desulfovibrio vulgaris RCH1]
          Length = 359

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 106/281 (37%), Gaps = 22/281 (7%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
            SY+ D   +L     + E  I  + + ++   +I   +  RR   +  ++   ++  +K
Sbjct: 93  SSYKTDRSLYLK----HIEPVIGSRRMDEVKTVDINELL--RRMGDLSPQTRVHAVGLVK 146

Query: 97  SFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
              + +    +    +    +   +  N+  R L+ K+A  L++ +   +          
Sbjct: 147 RLYRRMAGWGVYHGPTPTDGVVVKRVDNARMRFLSPKEARWLLEELDCRSPQ------FA 200

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
           +   + L    GLR+ E  SL  Q++  D   + +       R+  +   + + +  Y  
Sbjct: 201 DVCRVSLF--AGLRLREIFSLKVQHVNIDARVIAVMDAKSGSRMASMTEDLARVLARYVV 258

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL---STTAHTLRHSFATH 272
               +  +  +        G       F R +R L    G+         HTLRH+FA+ 
Sbjct: 259 GRRPEEFVFTKA----SGEGMRTINQTFVRVVRDLELNDGVDDARHKVVFHTLRHTFASW 314

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           L+  G  L ++  ++GH  +  T+ Y  +      + + ++
Sbjct: 315 LVQRGVPLYTVADLMGHSVVEMTRRYAKLAPDTRREAVNQL 355


>gi|182413036|ref|YP_001818102.1| integrase family protein [Opitutus terrae PB90-1]
 gi|182414798|ref|YP_001819864.1| integrase family protein [Opitutus terrae PB90-1]
 gi|182416163|ref|YP_001821229.1| integrase family protein [Opitutus terrae PB90-1]
 gi|182416191|ref|YP_001821257.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177840250|gb|ACB74502.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177842012|gb|ACB76264.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177843377|gb|ACB77629.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177843405|gb|ACB77657.1| integrase family protein [Opitutus terrae PB90-1]
          Length = 330

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 89/254 (35%), Gaps = 20/254 (7%)

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           T+ +   +    +S ++ F  Y       T   +  M   +++  +P      +   ++ 
Sbjct: 63  TEHLAPGTRINRMSILRQFCLYQSHFDPRTCI-VHRMFLPRRNRPMPHIYTVAEVRRIMA 121

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR 198
                            + ++  LY  GLR+ EA+ L   ++   +  L I+  K  K R
Sbjct: 122 AAPPAERSPDPLRPVVFATLVGFLYATGLRVGEAVKLNLADVDLSRRLLLIRQTKFGKTR 181

Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL- 256
            VPL P   K +  Y         +     P F    G   +   F     Q+ R LGL 
Sbjct: 182 YVPLAPCTTKQLAAYVAQRRAARFSQEPTAPFFPSSLGGRYHVPSFTTVFLQVLRRLGLR 241

Query: 257 ----PLSTTAHTLRHSFATHLLSNG--------GDLRSIQSILGHFRLSTTQIYTNVNSK 304
                     H LRHSFA   L             L  + + LGH  ++ T+IY +  ++
Sbjct: 242 GPPGQRGPRIHDLRHSFAVSRLMAWHKSGDNLFAKLPLLSTYLGHSTVTGTEIYLHATAE 301

Query: 305 NGGDWMMEIYDQTH 318
                M  +  + H
Sbjct: 302 ----LMESVGQRFH 311


>gi|126667017|ref|ZP_01737992.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126628423|gb|EAZ99045.1| phage-related integrase [Marinobacter sp. ELB17]
          Length = 181

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 46/175 (26%), Positives = 69/175 (39%), Gaps = 15/175 (8%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           +L +LY  G R+SE + +   +I     +++R+ GKG K R VPL     K I ++    
Sbjct: 1   MLTVLYNTGARVSELIGIRVADITLAATASVRLHGKGRKQRTVPLWKETAKEIRQWLKYA 60

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTAHTLRHSFAT 271
               +L+++ PL     G P+        +                   + HT RH+ A 
Sbjct: 61  ----DLHVEQPLIPNRSGLPMTRTNVAERLNLAVSTATKMCPQLAGRRISPHTWRHTTAM 116

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
           HLL  G DL  I   LGH    TT  Y   +       +  I     P  TQ  +
Sbjct: 117 HLLQAGVDLTVIALWLGHESPVTTHGYVEADMGMKERALAAIT----PPATQHKR 167


>gi|255014968|ref|ZP_05287094.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 407

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 46/309 (14%), Positives = 105/309 (33%), Gaps = 25/309 (8%)

Query: 14  LLKERQNWLQNLEIERGLSKL----TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           LL   + +++N   E+ +       +L++Y         FL      K++      L  +
Sbjct: 109 LLGYFRRFIRN--FEKRVGINRTVGSLRAYSNAYSHIERFLQAQY--KLSDIPFSALDRS 164

Query: 70  EIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            I  +    RT++ +   ++      +K+ +       I T S  +      +   + + 
Sbjct: 165 FIDKYDLYLRTERNLAPGTIINLTVQLKTIVGEAIADGIITASPFMGYE-PVRPKHVQKY 223

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L  ++   ++   L                +       G+   +   LT  N+   +  +
Sbjct: 224 LTAEELHRIMTTPLHRQPL------YHVRDMFLFSCFTGIPYGDMRLLTKDNLCLAEDGI 277

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
                  +   +     +    L+           +  LP++               Y++
Sbjct: 278 WWIKSARQKTKIEFEIPLLDLPLQILKKYSGTAPGDKLLPMYCN--------STLNLYLK 329

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++ R   +      H  RH++AT + LS+G  L ++  +LGH ++ TTQIY  V  +   
Sbjct: 330 EIARICHIDRPLVFHAGRHTYATEITLSHGVPLETVSRMLGHSQIETTQIYAKVTDEKID 389

Query: 308 DWMMEIYDQ 316
                +  +
Sbjct: 390 ADTKALNRK 398


>gi|217959653|ref|YP_002338205.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus cereus AH187]
 gi|217067025|gb|ACJ81275.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus cereus AH187]
          Length = 319

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 65/312 (20%), Positives = 122/312 (39%), Gaps = 22/312 (7%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           VS E     +++L   + + G +  TLQ Y  D R  L  +  + E K  I     L+  
Sbjct: 14  VSQENKNLVKDFLIEKKAQ-GKAASTLQQYHWDLRIILFLIHQHFENKKLI----DLTRK 68

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRN-LKKSNSLP 126
           +IR      +  ++ +  +   +S ++S L++           +    +R   K      
Sbjct: 69  DIRNLSIIFQEMEMSNARVNGLMSALRSTLEFCADDDDYDYEFNVGSRVRGLPKNPVREI 128

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             ++E+Q   L+D +L       K      +  L L Y    R +E   +  + + +   
Sbjct: 129 TFISEEQIEWLIDELL-------KQEKYILATYLALSYYSAARKNEVYQVQKEELTERYF 181

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           T  ++GK  K   +   P V+K I  Y +    D   ++ + +++    + LN  VF  +
Sbjct: 182 TNVVRGKRGKKFRLYYNPRVQKCIRLYINQRGKDTIPDLFVRVYKNGERRTLNKSVFNYW 241

Query: 247 IRQLRRYL----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +   + L    G       H  RHS   +L   G  L  ++S+  H  +STT+ Y    
Sbjct: 242 CKIFAKMLYEKEGKEFKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTESYLK-- 299

Query: 303 SKNGGDWMMEIY 314
                + + EI+
Sbjct: 300 -DRSEEDIAEIF 310


>gi|291164815|gb|ADD80845.1| tyrosine recombinase/integrase [Rhodococcus phage ReqiDocB7]
          Length = 159

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 13/155 (8%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
             + A++ LL  CGLRISE  SL+  +I  D+  + + GKGDK R VP+     + + + 
Sbjct: 14  PTDRALVTLLGRCGLRISEVRSLSTYSIDTDERVITVIGKGDKTREVPISSQAWEDLRDR 73

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                             G    PL+    +R  + +    GL  S T H  R + AT +
Sbjct: 74  ISEAG------------PGEMLVPLSDRTARRRWKDIAGKAGLGDSAT-HDGRATVATAM 120

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            +   ++R +Q  LGH    TT+ YT V  +   +
Sbjct: 121 HNKTNNIRVVQEFLGHASSKTTETYTAVALEQMRE 155


>gi|253581963|ref|ZP_04859187.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
 gi|251836312|gb|EES64849.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
          Length = 339

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 57/286 (19%), Positives = 111/286 (38%), Gaps = 37/286 (12%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           + LSKL+  +YE +   F         + +  + I +L    ++ F++     +   R++
Sbjct: 84  KKLSKLSQSNYESNYTHF---------KPLKDRKIAELKTIHLQEFMNNLELSESSKRNI 134

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-PRALNEKQALTLVDNVLLHTSH 147
           KR L+      KY  K  I  +     +   K    L  +   +++   L     L    
Sbjct: 135 KRMLN---QLFKYALKYDIIEKDYTQFIELGKVEKILERKIFTDEEISKLWKYKELEWVD 191

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR--IQGKGDKIRIVPLLPS 205
                       + ++   G+R+ E L++  Q+I  +  T+R  I+    K R++P+   
Sbjct: 192 T-----------ILIMIYTGMRVGELLTIKNQDIDLENRTIRGGIKTDAGKNRLIPINMK 240

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           +   I                  L    + K L+   +  Y ++L +   L +  T H  
Sbjct: 241 ILPFIKTRMTPSNE--------YLILSRKEKNLSYSSYITYFKKLMKK--LDMEHTIHDC 290

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWM 310
           RH+FA+ L +   +  SI  I+GH     T+ IYT+ + +     +
Sbjct: 291 RHTFASLLSNADANKVSIAKIIGHSNYDMTEKIYTHKDIEELKKAI 336


>gi|307565175|ref|ZP_07627678.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307346119|gb|EFN91453.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 247

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 86/228 (37%), Gaps = 15/228 (6%)

Query: 105 RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLY 164
            +I   +   +    K   ++ R L++     L+   +  +  E          +     
Sbjct: 3   HRIIRYNPFEHAEYEKVEKAI-RFLSKSDVANLMAMKMCDSDAELA------RRMFIFSC 55

Query: 165 GCGLRISEALSLTPQNIM---DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
             GL I++   LT  +I    D Q  +R  + K     IVPL P  +  I +   L    
Sbjct: 56  FTGLAITDMEHLTFGHIKSAADGQMYIRKERQKTKVEFIVPLHPIAKTIIEQQRQLKAVK 115

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
              N      R I     +  V    +  + +  G+    + H  RH+F T  LS G  +
Sbjct: 116 EEGNNTDMDNRFIFQPYCSRSVLAAKLSIVGKACGIKQRLSYHMARHTFGTMCLSAGIPI 175

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
            SI  ++GH  +++TQIY  V      + M  +  +      +K+K+N
Sbjct: 176 ESIAKMMGHASIASTQIYAQVTDCKISEDMDRLIAKHQ----EKNKEN 219


>gi|237742699|ref|ZP_04573180.1| tyrosine recombinase xerC [Fusobacterium sp. 4_1_13]
 gi|229430347|gb|EEO40559.1| tyrosine recombinase xerC [Fusobacterium sp. 4_1_13]
          Length = 414

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 63/316 (19%), Positives = 126/316 (39%), Gaps = 50/316 (15%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLK 89
           LS +T   Y+ + ++   +  F +       +  +L+  +I  ++      +K+   ++ 
Sbjct: 107 LSIVTKNGYKNEVKKMKNYAPFKSI------SFAELTKKDIEHYLEYLFIIEKLASSTIA 160

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           +    + +  K   +R++   + I     +K   +  +AL++++A   ++ +        
Sbjct: 161 KIRVVLGTLYKVAIQRELVEYNLIYKTEPIKVKKTKRKALSKEKAKIFLEALE------- 213

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI------------ 197
              ++      YLL   GLR SE L +T  NI  ++ +L ++                  
Sbjct: 214 ---NSEYKLEFYLLIFLGLRKSELLGITIDNINFEEKSLYLEQSLIWDSENKIYVVNREM 270

Query: 198 ------RIVPLLPSVRKAILEYYDLCPFD-------------LNLNIQLPLFRGIRGKPL 238
                 R  PL+P +   + E  D    D             LN N +  L     GK L
Sbjct: 271 KSPLAHRKFPLIPILTDFLTERIDRIKEDKIFFGNTYGIDKKLNFNAEGYLCIDREGKIL 330

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-I 297
                   + ++ + + L    + H LRH+ AT + S G DL+ IQ  LGH  +STT  I
Sbjct: 331 RKFKLNYELDKILKKIELE-HLSIHELRHTCATLMYSEGVDLKKIQYWLGHSNISTTANI 389

Query: 298 YTNVNSKNGGDWMMEI 313
           Y + ++    + + ++
Sbjct: 390 YAHYDNSKNFEVIGKL 405


>gi|167465667|ref|ZP_02330756.1| DNA integration/recombination/invertion protein [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 412

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 54/324 (16%), Positives = 107/324 (33%), Gaps = 50/324 (15%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR---------R 79
           + LS LT ++Y             +       + +  +    I  FI            +
Sbjct: 93  KNLSPLTYKTYMHHIE-------NHIMPTFGHKFLGDIKTLHIVTFIDDLGKPGSRKDNK 145

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +   +++     +K+ L    + ++   +  + ++  K   +     +EK+A  ++ 
Sbjct: 146 GDTLSPGTIQFIYRVLKNILTRATEWQLIKSNPTVGVKKPKVEQTQLDFYDEKEAREVIK 205

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK------ 193
            +                 IL  + G G R  E + L   ++  +  T+ I+        
Sbjct: 206 ALYQEPRR-------WRLLILGAMLG-GCRRGELVGLEWSDVDFENKTISIRKSISLTVD 257

Query: 194 ----------GDKIRIVPLLPSVRKAILEYYDLCPFD-------LNLNIQLPLFRGIRGK 236
                        IR + +       + EY      +            +  +F    GK
Sbjct: 258 SRAIEKEPKSKSSIRTIDMPQWYMVELKEYEREWKKEKLSVGDKWIGGDRRYVFHAGLGK 317

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT- 295
           P        +  +  +   L      H LRHS AT L+  G  +++IQ  LGH +  TT 
Sbjct: 318 PYFYSYPSEWWSKFIKRHDL-KRVRFHDLRHSSATLLIEAGASMKAIQQRLGHSKHQTTA 376

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHP 319
            +Y +V  K   +   E +D+  P
Sbjct: 377 DVYAHVTKKVSRET-AEKFDKFAP 399


>gi|15807824|ref|NP_285479.1| integrase/recombinase [Deinococcus radiodurans R1]
 gi|6460503|gb|AAF12209.1|AE001862_35 integrase/recombinase, putative [Deinococcus radiodurans R1]
          Length = 344

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 54/291 (18%), Positives = 106/291 (36%), Gaps = 35/291 (12%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  T+++Y    RQF   +A+ TE+ I +         + + +++           ++  
Sbjct: 74  SPRTVEAYALGVRQF---VAYATEQAINLLRP---GRHDAQGYVNAMLAAGRAPAGVQLK 127

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLK-----KSNSLPRALNEKQALTLVDNVLLHTS 146
           ++      + L+    T      +++  K          P   +E     +++   +   
Sbjct: 128 VAAAGCLYRALRWAGATEADPFRDVKVPKDRTPGIVKRPP--YSEDDIADVIEQADVQA- 184

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS 205
                       +L+L    GLRISEAL+L  Q++ +    + ++ GKG K RIV +  S
Sbjct: 185 ----------KFLLFLTAHAGLRISEALALEWQDLDESARRIHVRSGKGRKSRIVAMSSS 234

Query: 206 VRKAILEYYDLC-----PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           + +A   Y           D       P         +       +I +  +  G+P   
Sbjct: 235 LGRAARAYRTQFAPGGPEHDTGHRTTPPERVFRYASVMTAR---YHIEKAFKAAGVPFR- 290

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI-YTNVNSKNGGDWM 310
             H  R    T LL    D   + + LGH  + TT+  Y  + + +  + +
Sbjct: 291 GFHPGRKYAGTKLLRQIKDFGRVAAHLGHESVDTTRRGYAQLAADDLKEDL 341


>gi|256617395|ref|ZP_05474241.1| phage integrase [Enterococcus faecalis ATCC 4200]
 gi|256596922|gb|EEU16098.1| phage integrase [Enterococcus faecalis ATCC 4200]
          Length = 328

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 61/339 (17%), Positives = 124/339 (36%), Gaps = 53/339 (15%)

Query: 7   PEIVSFELLKERQNWLQNLEI-ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           P+++ ++ L      L  LE+ ++ ++  T   Y+           F+  +KI +  ++ 
Sbjct: 8   PDLLFYDYL------LNYLEVSKKQVAFNTYVGYKHYVHN--RIYKFFYPKKIKLNRLKP 59

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
                ++ F            ++    + I+  L+     ++ + +    +R  KK   +
Sbjct: 60  Y---HLQDFYQYMLNDDCTANTVIHYHAFIRKALQEAVITELISTNVADKVRKPKKKQFV 116

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
            +  N+ + L L+D             + +   ++ L    GLR SE L L    I    
Sbjct: 117 SQVYNQHEILKLLDI----------LSEEKLYLVVLLTAFYGLRRSEVLGLKWSAIDFLN 166

Query: 186 STLRIQG-------------KGDKIRIVPLLPSV-------------RKAILEYYDLCPF 219
             + I               K D+ +      ++              K   +   L   
Sbjct: 167 KKIMINHVIIENPENMSQLIKKDQTKNSSSYRTLPLVETIERALVNQAKWQQDNRILLGE 226

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
           D  L     +F    G+ + P      + +L +  GL      H LRHS A+ +L +G +
Sbjct: 227 DYILKDSEYVFTMEDGRLMKPQYVTHRLSKLIKKNGL-KKIRFHDLRHSNASIMLDSGQN 285

Query: 280 LRSIQSILGHFRLSTTQ-IYTNVNS---KNGGDWMMEIY 314
           ++SIQ  LGH   STT  +YT++ +   +   + +   +
Sbjct: 286 MKSIQEWLGHASYSTTANLYTHLTAGVKERAAEALENAF 324


>gi|304311457|ref|YP_003811055.1| Phage integrase, probably fragment [gamma proteobacterium HdN1]
 gi|304313109|ref|YP_003812707.1| phage integrase [gamma proteobacterium HdN1]
 gi|301797190|emb|CBL45408.1| Phage integrase, probably fragment [gamma proteobacterium HdN1]
 gi|301798842|emb|CBL47077.1| phage integrase [gamma proteobacterium HdN1]
          Length = 310

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 108/292 (36%), Gaps = 27/292 (9%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           ++T Q Y           A   E  +  ++   ++  E+  +  +    K+   S     
Sbjct: 18  EITAQGYRT--------AARVLERTLPKKSASDITTDELLLWRKQLL-GKVSVNSFNTYA 68

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             ++    + +K  +   + I  ++ +K+    P+ +       ++  +         W 
Sbjct: 69  RHLRIIFAHAEKNGLIASNPIAELKPIKRLQK-PKHVAYDDIQRVLRQLESGQLVRDGWF 127

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK----IRIVPLLPSVRK 208
            A    ++  L   G+R  + ++L   ++  ++ T+ +   G K     RI  +  +   
Sbjct: 128 WAI---LVRFLLSTGIRRRQLVNLKWGHLDFERKTILLTQAGSKNTLEWRIPMMASTAYD 184

Query: 209 AILEYYDLCPFDLNLNIQLPLF-----RGIRGKP--LNPGVFQRYIRQLRRYLGLPLSTT 261
            ++           +   + +F     R  R K   L P +   +  Q+ +   +     
Sbjct: 185 LMVLKERFENLGTKITSTMQVFNCTLLRNRRWKHTELKPHMVTTFFWQISKATNI--KIG 242

Query: 262 AHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           AH LRH+  T L  ++  +L  IQ +LGH  L++TQ+Y + +       +  
Sbjct: 243 AHRLRHTLGTRLGTADDANLLVIQQLLGHASLTSTQVYVHCSIGQARKVLER 294


>gi|312129828|ref|YP_003997168.1| integrase family protein [Leadbetterella byssophila DSM 17132]
 gi|311906374|gb|ADQ16815.1| integrase family protein [Leadbetterella byssophila DSM 17132]
          Length = 405

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 55/313 (17%), Positives = 121/313 (38%), Gaps = 29/313 (9%)

Query: 16  KERQNWLQN----LEIERG-LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           K+  N+ +      E  +G +S  T ++Y+    +F  F+               ++ T 
Sbjct: 99  KDMANFFEYAYNRCERIKGTVSVATYRNYKQYVAKFEKFIGHREI------YFDDITVTM 152

Query: 71  IRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNLKKSNSLPR 127
           ++ +I+      K G  ++  SL  +    +  ++  I  E       +R +K+      
Sbjct: 153 LKDYINHMSNNLKNGPTTVHYSLLILSVMFRDAQREDIIGEHIYPFSKVR-VKRDKGKRL 211

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            LN++Q   L +  + +T  +  + D      ++ +Y  GLR S+ +SL  ++    +  
Sbjct: 212 FLNKEQVEKLRNFKIEYTGKDEVFRDM----FIFSVYAGGLRFSDVVSLKWEHYNKKEQR 267

Query: 188 L-RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF--- 243
           + +   K  +     +       + +Y        +    +           +   +   
Sbjct: 268 ITKTIRKTGRNHNFKIGQIAIDILNKYKTEISLPSDFVFPIIEDVERFDADTDYQAYIIN 327

Query: 244 ------QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
                  + +R+L + + LP + + H  RH+FAT+ L+NG  +  +  +L H  +  TQI
Sbjct: 328 AKNILCGQKLRRLGKDMELPFTLSFHLSRHTFATNALNNGMRIEYVSKLLDHSDIGITQI 387

Query: 298 YTNVNSKNGGDWM 310
           Y  V S+     +
Sbjct: 388 YAKVISEELDKAV 400


>gi|312794335|ref|YP_004027258.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312181475|gb|ADQ41645.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 374

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 63/329 (19%), Positives = 116/329 (35%), Gaps = 44/329 (13%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
            N L E  +F  L +   WL  +   R +S  T QSY           A + +  +    
Sbjct: 54  KNKLLERKTFGELLDL--WLNTVAKNR-VSLSTFQSYSSSI-------ALHIKPFLGDYE 103

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSL-SGIKSFLKYLKKRKITTESNILNMRNLKK 121
           + +L+  +++ +     T+K    +L       I   L Y  K  +  ++    +   KK
Sbjct: 104 LSKLTPMDLQKYYQHIMTEKGLSSTLALYHHRIIHQALDYAVKMDMLEKNPADYVDPPKK 163

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
            N  P   +E+     ++           + +      + L    G+RI E  +L   ++
Sbjct: 164 RNYQPSIWDEETIKKTLEI----------FKETNIRIPVLLAVYTGMRIGEITALKWDDV 213

Query: 182 MDDQSTLRIQGK----------------GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
             +Q  + +                    +  RIV +   V + + E+            
Sbjct: 214 NLEQGYITVSKTLMKINGQTYIKEKAENKNSYRIVAISNQVVEELKEWKAKQEKLKKELK 273

Query: 226 QLPLFRGIRGKP-----LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
           +L    G           +P    +  ++     GLP     H LRH+ A+ LL +G D 
Sbjct: 274 ELYHDEGFVCTFEDGRVQDPKYITKVFQKTIEKHGLPK-IRFHDLRHTHASLLLKHGVDP 332

Query: 281 RSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
           + I   LGH  ++TT  IY++V  +    
Sbjct: 333 KHISDRLGHSTVTTTLNIYSHVFDEKRRK 361


>gi|253568529|ref|ZP_04845940.1| transposase [Bacteroides sp. 1_1_6]
 gi|251842602|gb|EES70682.1| transposase [Bacteroides sp. 1_1_6]
          Length = 410

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 60/315 (19%), Positives = 115/315 (36%), Gaps = 37/315 (11%)

Query: 14  LLKERQNWLQNLEIER----GLSKLTLQSYE---CDTRQFLIFLAFYTEEKITIQTIRQL 66
           LLK  +    N E E+      ++ T   Y       R+FL     Y  E I ++ +   
Sbjct: 109 LLKLFEQ--HNAEFEKKVGHSRAQGTFTRYRTVCNHIREFLPH--TYKREDIPLKELNLT 164

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSL 125
              +   F+  R  +K    ++   +  +K  +   +       +     + + +  +  
Sbjct: 165 FINDFEYFL--RTEKKCRTNTVWGYMIALKHIVSIARNDGRLPFNPFAGYINSPESVDR- 221

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT---PQNIM 182
              L + +  TL+D  + + +HE          +       GL  S+  +LT    Q   
Sbjct: 222 -GYLTQTEIQTLMDAPMKNATHELV------RDLFVFSVFTGLAYSDVKNLTADRLQTFF 274

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           D    +  + K         L  V K I+E Y     D ++               + G 
Sbjct: 275 DGNLWIITRRKKTNTESNIRLLDVPKHIIEKYKGLARDGHVFPVP-----------SNGS 323

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHS-FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             + ++++ R  G  +  T H  RH+   T LLS+G  + ++  +LGH  + TTQIY  +
Sbjct: 324 CNKILKEIGRQCGFKVRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKI 383

Query: 302 NSKNGGDWMMEIYDQ 316
            ++     M  +  +
Sbjct: 384 TAQKISQDMETLSHK 398


>gi|116687240|ref|YP_840486.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
 gi|116652955|gb|ABK13593.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
          Length = 563

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 68/329 (20%), Positives = 119/329 (36%), Gaps = 39/329 (11%)

Query: 16  KERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           KE +  +    +ERG  LS LT      D   +  FL   T  +  +   R     E R 
Sbjct: 241 KEAERLILWAIVERGRPLSSLT----TDDAIAYRGFLRRPTPRERWVGPSRPRHSVEWRP 296

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR----NLKKSNSLPRAL 129
           F     +  +  RS   +L+ + +  ++L +++    +    ++      +    + R  
Sbjct: 297 F-----SGPLSARSAAYALTVLSAMFRWLVEQRYVLANPFAGVKVRGAAARTGLDVARGF 351

Query: 130 NEKQAL--TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS- 186
            E + L    + + L  +         R   +L   Y  GLR SE +  T  +I  D+  
Sbjct: 352 TEGEWLLIRALADGLEWSYGWGAPAAHRLRFLLDFGYATGLRASELVGATLGDIRRDEHG 411

Query: 187 --TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR----------GIR 234
              L + GKG K+  V L    R A+ +        +  +   P             GI 
Sbjct: 412 DHWLHVIGKGGKLGKVALPALARSALDQSLVQRGLPVTPSRWDPATPLVANLEEDGAGIE 471

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTT--------AHTLRHSFATHLLSNGGDLRSIQSI 286
              L   V +R+ R     +      T         H +RH+ ATH L+ G +L  ++  
Sbjct: 472 STRL-WRVLRRFFRFAADAIQDERPATAEKLRRASPHWMRHTHATHALARGSELIMVRDN 530

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L H  +STT  Y + +         + ++
Sbjct: 531 LRHASISTTSTYLHGDEIRRARQFDQAFE 559


>gi|295841220|dbj|BAJ07003.1| integrase [uncultured bacterium]
          Length = 419

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/284 (20%), Positives = 94/284 (33%), Gaps = 60/284 (21%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           R  S+ T ++Y     +F  F    +               E+R F+      Q +   +
Sbjct: 158 RSYSRQTKKAYLSWAGRFFHFHRRRSGG--------DFKPDEVRDFLEDLALRQGVSVST 209

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
            K++L+ +      +    +    +    +  K    LP  L+ ++   L+D +      
Sbjct: 210 QKQALNALSFLSAVVLGTPLGDLGDFAKSKRPK---RLPVVLSRREVRLLLDQM------ 260

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
                   +     LLYG GLRI EAL L  +++  +   + ++ GKG K R+  L    
Sbjct: 261 -----TGAHLLAAGLLYGSGLRIMEALRLRVKDLDFELGQIVVRDGKGRKDRVSVLPERY 315

Query: 207 R------------------------------------KAILEYYDLCPFDLNLNIQLPLF 230
           R                                     A  E+     F        P  
Sbjct: 316 RPSLEDHLSRVRILHGQDLGRHYGGATFYPSLARKYPHAPREWIWQYAFPSGRLTVDPSS 375

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                  L+    QR I+       +    T+HTLRHSFATHLL
Sbjct: 376 GRTMRHHLHETALQRAIKAASGRARMDKKVTSHTLRHSFATHLL 419


>gi|86143473|ref|ZP_01061858.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
 gi|85829920|gb|EAQ48381.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
          Length = 414

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 70/335 (20%), Positives = 130/335 (38%), Gaps = 30/335 (8%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSY---ECDTRQFLIFLAFYTEEK 57
           ++G N    ++ E+ KE    +  L I + +S  + Q Y       +QF+     Y EE 
Sbjct: 99  LKGENQQNKLALEVFKEHNEKIDQL-IGKDISASSAQRYWTCHNHVQQFIN--EEYDEED 155

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
             ++ I      +   F+  +R       S  + ++  K  ++     K  +    +N +
Sbjct: 156 YRLRDIDHNFIIKFEHFLKTKRNCN--HNSALKYVNNFKKIVRIALANKWISHDPFINYK 213

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
            +K        L +++   L +  L    H  + I  R+  +       GL  S+   L+
Sbjct: 214 -VKFEPVEREFLTQEEIDALWEKEL----HFERLILVRD--MFVFSCYTGLAYSDVEKLS 266

Query: 178 PQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
             +I   +D    +RI       R    L  V + IL  Y+  P        +P+     
Sbjct: 267 KSDITIGIDGSKWIRIHRTKTGSRSSIPLLPVAEQILARYENHPQVEESERVIPV----- 321

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLS 293
              L+      +++++     +    T H  RH+FAT + L+NG  + ++  +LGH  L 
Sbjct: 322 ---LSNQKSNAFLKEIAIMCDISKPLTTHLARHTFATTVTLTNGVPIETVSRMLGHQSLR 378

Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           TTQ Y  +  +   D M  + ++      QK KK 
Sbjct: 379 TTQHYAKIVDRKISDDMNILKEKL---AAQKSKKE 410


>gi|295114675|emb|CBL35522.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1]
          Length = 415

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 55/314 (17%), Positives = 113/314 (35%), Gaps = 21/314 (6%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M  +     VS +  K    +L      +G    T        R++L +      E +  
Sbjct: 101 MPKHGTKYPVSEDSEKLIDLFLDY----KGYGPNTRDDVVWVVRRYLHYF-----ESLGY 151

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NL 119
            ++  ++  ++R FI K   + +   SL   L  +K F  +LK+  +     +      +
Sbjct: 152 ASLEWVTVEQVREFILKTAAE-VKTSSLHNILLYLKHFHIFLKESSLPAPDCVELFSYRV 210

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
            +   +   + +++   ++             +  R+ AI+ L    GLR  + + +   
Sbjct: 211 YRDMPIQSYVTDEELDQIL-----RVIDTDSEMGKRDRAIILLAATTGLRAGDLIRIKLT 265

Query: 180 NIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           +I   +  +R  Q K  ++   PL+    +A+ +Y                    R    
Sbjct: 266 DIDWRKGEIRFTQRKTGRVSYTPLVKEAGEALQDYILNARPRSESPEVFLRLIAPRTGLA 325

Query: 239 NPGVFQRYIRQLRRYLGLPLST----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           +        +Q +R  G+          H LR   A  LL  G  L +I  ILGH    +
Sbjct: 326 DAVSIGCMFQQYQRKAGIYRHAFDGKGFHGLRRRLAKKLLVTGTPLTTITQILGHDDPKS 385

Query: 295 TQIYTNVNSKNGGD 308
            + Y +++++N  +
Sbjct: 386 ARQYLSLDTRNLKE 399


>gi|260450874|gb|ACX41296.1| integrase family protein [Escherichia coli DH1]
 gi|315138868|dbj|BAJ46027.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli DH1]
          Length = 200

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 67/181 (37%), Gaps = 8/181 (4%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K  N     L   +  +L+       +  T    ARN  +  L +  G R SE   L   
Sbjct: 4   KADNKKRNFLTHSEIESLL------KAANTGPHAARNYCLTLLCFIHGFRASEICRLRIS 57

Query: 180 NIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           +I      + I   K       PLL    +A+  +  +     ++  +  +F   +G PL
Sbjct: 58  DIDLKAKCIYIHRLKKGFSTTHPLLNKEVQALKNWLSIRTSYPHVESE-WVFLSRKGNPL 116

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +   F   I       GL L    H LRHS    L + G D R IQ  LGH  +  T  Y
Sbjct: 117 SRQQFYHIISTSGGNAGLSLEIHPHMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWY 176

Query: 299 T 299
           T
Sbjct: 177 T 177


>gi|160700678|ref|YP_001552358.1| gp29 [Mycobacterium phage Giles]
 gi|159136628|gb|ABW88424.1| gp29 [Mycobacterium phage Giles]
 gi|302749835|gb|ADL66924.1| Int [Cloning vector pGH1000A::zeo-ID]
          Length = 397

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 57/313 (18%), Positives = 110/313 (35%), Gaps = 49/313 (15%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT--------- 80
           G +  T   Y   +RQ++               + +L  +++ A + + +          
Sbjct: 86  GRADSTKSLYGTLSRQYVE------PAPFGAIRLDRLRTSDVEALVLRLQQATRPGRDGT 139

Query: 81  --QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + + D +++ + + ++  L    +  +   +    M+    S    R +N+ Q   L+
Sbjct: 140 PVRAVADSTIRSTYTVLRQALDGAVRDGLMARNPAAAMKRPGLSRPEVRRINDAQLADLL 199

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-------- 190
                   H            L L+   GLR  EAL+L    +  D  +LR+        
Sbjct: 200 AATAGSRYHRA----------LLLIAATGLRAGEALALRWDAVDLDAGSLRVVATVGRVE 249

Query: 191 -------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-----NLNIQLPLFRGIRGKPL 238
                         R VPL P +   +  +      +             +F    G+P+
Sbjct: 250 RRLRLTTPKTERSRRTVPLTPDMVSMLRRHRADQLAERLRAANVWEDHGLVFPSAFGRPV 309

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QI 297
           +P    R + Q    +GL      HTLRH+ A  +L  G  +R++  ILGH  ++ T  I
Sbjct: 310 DPRNLLRVVEQAAAQVGLE-GVGVHTLRHAAAVAMLEAGIHIRAVADILGHSSVAVTGDI 368

Query: 298 YTNVNSKNGGDWM 310
           Y + +       +
Sbjct: 369 YGHTSDATARAAV 381


>gi|66395896|ref|YP_240263.1| ORF011 [Staphylococcus phage 96]
 gi|62636317|gb|AAX91428.1| ORF011 [Staphylococcus phage 96]
          Length = 349

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 132/319 (41%), Gaps = 36/319 (11%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           +GNNL E   FE  +   +WL + + ++ ++      Y+   + F  +         +  
Sbjct: 55  DGNNLDENKKFE--EYYNDWLDS-KNKKHVASQQFYWYQRSLKLFNEYFG-------SDF 104

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNL 119
            I+ +  +E + F+++   +   + ++++  S +    +         +     +++R  
Sbjct: 105 LIKNIKRSEYQKFLNEF-GRGRTNETVRKLNSCLSQCFRDAVYEGYLKKDPSYQIDIRGT 163

Query: 120 KKSN-SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           KKS     + +  +Q L L++          K  D  +   L++L   G R S+ +++ P
Sbjct: 164 KKSKDEHSKFITIEQYLQLIEYF--------KSRDESSYIFLFILAITGARYSDVINMLP 215

Query: 179 QNIMDDQSTLRIQGKG--DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
            ++ + + T+ ++G    +  R+V +     + I               +LP     +  
Sbjct: 216 IDLNEKEGTIHLRGTKTVNADRLVEVPKKDIQHIKAKL----------SKLPKRTDNKLF 265

Query: 237 PLNPGVFQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            L+    ++     +  +GL  +  T ++LRH+  + LLS G  +  I   LGH+ +S T
Sbjct: 266 KLSHNAVKKSFNHAKSQIGLNDTTITPYSLRHTHTSFLLSKGIPIEYISKRLGHYNISIT 325

Query: 296 -QIYTNVNSKNGGDWMMEI 313
              Y+++  ++  +    +
Sbjct: 326 LDTYSHLLDEHKKEQGQRV 344


>gi|331087330|ref|ZP_08336398.1| hypothetical protein HMPREF0987_02701 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408356|gb|EGG87831.1| hypothetical protein HMPREF0987_02701 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 420

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 113/322 (35%), Gaps = 42/322 (13%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ- 81
           + L  + G+   T  +Y                       I ++  ++ + F+ K + + 
Sbjct: 88  RYLATKTGVKYNTQMNYN-------FVKNILKAHPFGDTKISRVKTSDAKLFLIKLQQED 140

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLKKSNSLPR-ALNEKQALTLVD 139
             G  S+K     ++   +      +  ++     +  +  ++S+ R A+ ++Q    + 
Sbjct: 141 GRGYSSIKTIRGVLRPAFQMAVDDDVLNKNPFGFQLAGVVVNDSVTREAITKEQMNKFLK 200

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------- 191
            V          +  +   ++Y+L+  G+RISE   LT  +I    + + I         
Sbjct: 201 FV------HDDNVYCKYYEVIYILFHTGMRISEFCGLTISDIDLANNIVNIDHQLQRTSD 254

Query: 192 ------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
                       G         +    R  + +        +       LF    G P  
Sbjct: 255 MKYILDTTKTDAGTRKLPITQDVADCFRAILEDRKKPRYEKMIKGHTGFLFLDKNGNPEV 314

Query: 240 PGVFQRYIRQLRRYLG-----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              +Q  +  + +           + T H  RH++ +++  +G + +++Q ++GH  +S 
Sbjct: 315 AMHWQHRLNHMVKRYNDIYRVQMPNITPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISV 374

Query: 295 TQ-IYTNVNSKNGGDWMMEIYD 315
           T   YT+   ++  D + ++ D
Sbjct: 375 TMNTYTHWGLEDAADELKKMED 396


>gi|319901621|ref|YP_004161349.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319416652|gb|ADV43763.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 407

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 107/288 (37%), Gaps = 27/288 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI-GDRSLKR 90
           S  TL  Y+   R+   F+       IT   ++++++  I  F +  RT  +  + +  +
Sbjct: 130 SAATLAKYDRCYRRMEEFMKAKY--NITDIALKEINHMFITDFETYLRTVSLCNENTTAK 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +   +  +   K          +N + ++        L + +   ++          TK
Sbjct: 188 FMQTFRMIVIMAKNNGWIFTDPFVNYK-IRLKRVDRGYLTDAELQKIM-----KKKFPTK 241

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQ----NIMDDQSTLRIQGKGDKIRIVPLLPSV 206
            ++      ++  +  GL   +  +L       +       ++ + K D    VPLL   
Sbjct: 242 RLEQVRDVFIFSCF-TGLAYIDLKTLKASEISISFDGKPWIMKHRQKTDTPVNVPLLKIP 300

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              + +Y       L     LP+        L+      Y++++    G+  + T H  R
Sbjct: 301 LAILKKY----EGQLPKGELLPV--------LSNQKLNSYLKEIGDLCGINKNITFHFAR 348

Query: 267 HSF-ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           H+F  T  L+ G  + ++  +LGH  + TTQIY  + +      M ++
Sbjct: 349 HTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNDKIRKDMQQL 396


>gi|154499800|ref|ZP_02037838.1| hypothetical protein BACCAP_03457 [Bacteroides capillosus ATCC
           29799]
 gi|150271398|gb|EDM98655.1| hypothetical protein BACCAP_03457 [Bacteroides capillosus ATCC
           29799]
          Length = 385

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/330 (15%), Positives = 108/330 (32%), Gaps = 64/330 (19%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            L   T  +YE       ++  +  +E    + +  +  +++  F +K         SL+
Sbjct: 59  RLKPSTRANYEY------LWDRYVKDEPFANEPLPNVRRSDVLGFYTKLLKHGFAINSLE 112

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNM--------RNLKKSNSLPRALNEKQALTLVDNV 141
              + +    +         ++    +           K    +  AL + Q    +   
Sbjct: 113 SINTIVHPAFELAVADDYIRKNPSKGIYTKLKTDGSAPKPKKRI--ALTKAQQKNFLQ-Y 169

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK-------- 193
           +  +   + W+      ++  L G GLR+ E   LT  ++  +++ + +           
Sbjct: 170 IARSPMYSHWLP-----VMVTLLGTGLRVGEFTGLTKDDVYLNKAQISVNHTLIYRVIDG 224

Query: 194 ------------GDKIRIVPLLPSVRKAI------LEYYDLCPFDLNLNIQLPLFRGIRG 235
                            I  L P V + +      ++        +       +FR   G
Sbjct: 225 KAGFHITTPKTESGNRIIPILYPEVIEQLSQQIEAMDALYPNDKLVLSGYHGFIFRNRYG 284

Query: 236 KPLNPGVFQRYIRQLRRYLGLP---------------LSTTAHTLRHSFATHLLSNGGDL 280
             L+     R I ++     +                   + H LRH+F T L  +  D+
Sbjct: 285 SFLSAHNINRAIERISTAYNMEELNQAELEDREPELLPHFSVHNLRHTFCTRLCESTNDI 344

Query: 281 RSIQSILGHFRLSTTQ-IYTNVNSKNGGDW 309
           + IQ ++GH   STT  IYT++  ++  + 
Sbjct: 345 KFIQQVMGHADFSTTMDIYTHITQESMEEK 374


>gi|90414999|ref|ZP_01222960.1| hypothetical integrase for prophage [Photobacterium profundum 3TCK]
 gi|90323869|gb|EAS40472.1| hypothetical integrase for prophage [Photobacterium profundum 3TCK]
          Length = 392

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/348 (16%), Positives = 123/348 (35%), Gaps = 61/348 (17%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + WL    IE  +++ TL +Y    +Q L +L    + ++ +  + Q    ++R  +  
Sbjct: 66  FERWLTLKRIE--VTEATLTNYHNRLKQTLAYL----DPELLVSHLTQEHILDLRMALLS 119

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                    ++   +  IK  L +    +  +   I  +++LK+S S P  L+  +   L
Sbjct: 120 ----TCSASTVNTYMRTIKGVLSFAITNEYCSPRVISGIKDLKQSKSPPTPLSRDEFFRL 175

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------ 191
           ++             + ++  +  L    GLR  E ++L  ++I  ++  + ++      
Sbjct: 176 IEACK----------NEQDKHLWALAVYTGLRHGELMALAWEDIDLNKGLIYVKRNLTLK 225

Query: 192 ------GKGDKIRIVPLLPSVRKAILEYYDLCPFDL------NLNIQLPLFRGIRGKPLN 239
                       R++ LL    KA+++   L    L             +         +
Sbjct: 226 GIFKLPKTTAGERVINLLDPAIKALIKQKPLTYMMLPESITVQQREHGKIEIETVHFIFS 285

Query: 240 PGV--------------FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
           P V                       R   +      +  RH+FA  +LS G +   I  
Sbjct: 286 PRVTATKETKSYYFHTSIHDKWTAAIRRARIAYR-KPYQTRHTFACWMLSAGANPTFIAK 344

Query: 286 ILGHFRLSTTQIY------TNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
            +GH      +IY       + +++N  D + + Y +  P++  K  K
Sbjct: 345 QMGHSSAK--EIYQTYGDWVSEHTQNQLDVLNKKYGENAPNMPLKTNK 390


>gi|282915692|ref|ZP_06323463.1| integrase [Staphylococcus aureus subsp. aureus D139]
 gi|282320508|gb|EFB50847.1| integrase [Staphylococcus aureus subsp. aureus D139]
          Length = 348

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 64/350 (18%), Positives = 129/350 (36%), Gaps = 45/350 (12%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+ N+  ++           WL++ +   G    T++  + +T      +          
Sbjct: 1   MKHNSTKQLEKLTFHDACNEWLEHYKTHSGSKPTTIKEKKSNTNTVKNAIDSKVL----- 55

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNL 119
             I ++++T ++  I     +      ++  +  I+S  KY  K   +   S +  +   
Sbjct: 56  --ISKITHTYLQN-IINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIP 112

Query: 120 KKSNSLPR-------ALNEKQALTLVDNVLLHTSHETKWIDARNS----AILYLLYGCGL 168
           KK+ +           L + +   L+        H+      RN     A++      G+
Sbjct: 113 KKAQTRNELQAKRNNYLEDSEVKELLQCFDYLIKHKRHATRKRNYEMVKALVEFQINNGM 172

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKI--------------------RIVPLLPS--- 205
           RI E L++   N+  +  TL I G  + +                    R + L      
Sbjct: 173 RIGELLAIKTDNVDVENKTLEIDGTINWVTDVETGAFGVKETTKTSKSYRTIGLTTQSIN 232

Query: 206 -VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            ++K +LE      ++     +  +F    G P++       I++      +    T HT
Sbjct: 233 LLKKLMLENKKENQWNAKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHT 292

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           LRH+  + L   G +L++IQ  +GH    TT +IYT+V  +   D M ++
Sbjct: 293 LRHTHISTLAQLGINLKAIQDRVGHSDYKTTLEIYTHVTDQMAKDMMNKL 342


>gi|289192602|ref|YP_003458543.1| integrase family protein [Methanocaldococcus sp. FS406-22]
 gi|288939052|gb|ADC69807.1| integrase family protein [Methanocaldococcus sp. FS406-22]
          Length = 185

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 68/161 (42%), Gaps = 8/161 (4%)

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           +  +     +LYG  LR+SE L+L  ++I  D+   ++     +   V ++P+    ++E
Sbjct: 27  NPEHKLFFKMLYGMALRVSELLNLRVKDINLDEQVAKLWDTKTESFQVCVIPT---WLIE 83

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                  +  L     LF        N       ++   +  G+    + HT R + A H
Sbjct: 84  DIRQHIREKRLKDDDRLFNFK-----NRKYAWELVKYYTKKAGINKELSTHTFRRTRALH 138

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           LL++G  L  +   L H  ++TT  Y N+  ++    + +I
Sbjct: 139 LLNDGVPLEKVSKYLRHKSINTTMKYLNITVEDLKAELRKI 179


>gi|265753987|ref|ZP_06089342.1| site-specific recombinase [Bacteroides sp. 3_1_33FAA]
 gi|333029237|ref|ZP_08457298.1| integrase family protein [Bacteroides coprosuis DSM 18011]
 gi|263235701|gb|EEZ21225.1| site-specific recombinase [Bacteroides sp. 3_1_33FAA]
 gi|332739834|gb|EGJ70316.1| integrase family protein [Bacteroides coprosuis DSM 18011]
          Length = 420

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/349 (16%), Positives = 124/349 (35%), Gaps = 52/349 (14%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M   ++P   S E++   Q +++ ++     SK T++  +    +   FL       IT 
Sbjct: 76  MVVPDIPNDDSPEVIDWIQTYMEWMDGNPEYSKRTVEQTQYLQERMKEFLKAKRRPHIT- 134

Query: 61  QTIRQLSYTEIRAFISKRR------------TQKIGDRSLKRSLSGIKSFLKYLKKRKIT 108
             + +   T  +AF    +             + + + SL+     I +      K    
Sbjct: 135 --LMKFDKTWFKAFFLWLKNDYVPQKYVRVKAKPLSNASLRNMQQRIVAVFNKAVKTGKL 192

Query: 109 TESNILN------MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
             +          +   K  + L   L   +    + +   +   ET             
Sbjct: 193 KANPFYQLEKEDTISKPKSGHKL--YLTPDELKLFMASEETNGVRET-------QLAFGF 243

Query: 163 LYGCGLRISEALSLTPQNIMDDQST---LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
               GLRIS+  +L   NIM ++ T   + +Q K  ++  VP+  +    +    D   F
Sbjct: 244 ACLTGLRISDIRALRWSNIMRNEVTNTLVIVQKKTKELNAVPICSTAEAWMPPKKDDKVF 303

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
            L  +                      ++++ + +G+  + + HT RH+F T + +  GD
Sbjct: 304 HLPAHAN----------------VDAALKRIAKKVGITKTISFHTSRHTFGTLIQAATGD 347

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKNGGDWM---MEIYDQTHPSITQKD 325
           + + + ++GH  L +T +Y +V ++     +     ++    P    K 
Sbjct: 348 IETTKKLMGHKSLKSTAVYADVLTEEKVKAISNTKTVFRSRKPHTENKK 396


>gi|260909620|ref|ZP_05916319.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260636263|gb|EEX54254.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 409

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 104/285 (36%), Gaps = 23/285 (8%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF-ISKRRTQKIGDRSLKRSLSG 94
           +  Y         F+      K++     QL+   I  F           + +   + + 
Sbjct: 134 IHGYHSTRIHLQEFIQKKY--KVSDLAFSQLTENFIHEFGQYFLGECGFQESTFYNAATH 191

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +K+  +   +  +         +  K    LP+AL+++     +D +      + +    
Sbjct: 192 LKTVCRLAYREGLADVPLFDKAKISKGDKKLPKALDKEA----LDKLKALYFEDLEEEME 247

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
               I       G    + + L  ++++ DD+ +L ++    K  +   +  + +AI   
Sbjct: 248 TARDIFLFACYTGAAYCDLMELGKKHLVRDDEGSLWLKFNRQKTSVPCRVKLLPEAIR-- 305

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                        LP         +    +Q Y++ LR   G+  S T HT RH+FAT +
Sbjct: 306 LMEKLHSDERETLLPF--------MGYVTYQSYLKALRLRAGISFSFTTHTARHTFATLI 357

Query: 274 -LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            L  G  + ++  +LGH  +S T+ Y  V  +     + E +D+ 
Sbjct: 358 TLEQGVPIETVSKMLGHSNVSMTERYAKVTPQ----KLFEEFDRF 398


>gi|255520384|ref|ZP_05387621.1| integrase [Listeria monocytogenes FSL J1-175]
          Length = 381

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 56/288 (19%), Positives = 97/288 (33%), Gaps = 27/288 (9%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
           E    +  IF   +     + + I ++     +  I+     K    S KR  +      
Sbjct: 89  ESTLERTKIFFNHHILPVFSDKFIDKIDIHFCQQVINTW--SKSNPASYKRLKNLTSRVF 146

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           KY     +        +   +          E++ +T  D   L +  +T   D      
Sbjct: 147 KYAISLHLIENDPFAFVVVPRGE----MIEKEEKDITFYDKYELRSFLDTVKDDTFKYTF 202

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------------GDKIRIVPLL 203
            YLL   GLR SEAL+LT  ++  +   L +                       R + + 
Sbjct: 203 FYLLAFTGLRKSEALALTWNDVDLNNKRLYVNKTLSRGEHARILVNTTKTKAGKRDISID 262

Query: 204 PSVRKAILE---YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
            S    + +   Y       L L+    +F        NP     ++  + ++       
Sbjct: 263 ASTVDVLKKWKSYQRGNHHILRLDKVQIIFDNEGNY-YNPSSTYSWLDNIFKHHTELKKI 321

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGG 307
           T+H  RH+ A+ L   G  L+ +Q  LGH  + TT  IYT+V  +   
Sbjct: 322 TSHGFRHTHASLLFEAGASLKDVQERLGHADIQTTSNIYTHVTQEKKD 369


>gi|322384294|ref|ZP_08058003.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150942|gb|EFX44368.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 413

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/324 (16%), Positives = 107/324 (33%), Gaps = 50/324 (15%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR---------R 79
           + LS LT ++Y             +       + +  +    I  FI            +
Sbjct: 94  KNLSPLTYKTYMHHIE-------NHIMPTFGHKFLGDIKTLHIVTFIDDLGKPGSRKDNK 146

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +   +++     +K+ L    + ++   +  + ++  K   +     +EK+A  ++ 
Sbjct: 147 GDTLSPGTIQFIYRVLKNILTRATEWQLIKSNPTVGVKKPKVEQTQLDFYDEKEAREVIK 206

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK------ 193
            +                 IL  + G G R  E + L   ++  +  T+ I+        
Sbjct: 207 ALYQEPRR-------WRLLILGAMLG-GCRRGELVGLEWSDVDFENKTISIRKSISLTVD 258

Query: 194 ----------GDKIRIVPLLPSVRKAILEYYDLCPFD-------LNLNIQLPLFRGIRGK 236
                        IR + +       + EY      +            +  +F    GK
Sbjct: 259 SRAIEKEPKSKSSIRTIDMPQWYMVELKEYEREWKKEKLSVGDKWIGGDRRYVFHAGLGK 318

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT- 295
           P        +  +  +   L      H LRHS AT L+  G  +++IQ  LGH +  TT 
Sbjct: 319 PYFYSYPSEWWSKFIKRHDL-KRVRFHDLRHSSATLLIEAGASMKAIQQRLGHSKHQTTA 377

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHP 319
            +Y +V  K   +   E +D+  P
Sbjct: 378 DVYAHVTKKVSRET-AEKFDKFAP 400


>gi|313898826|ref|ZP_07832360.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312956408|gb|EFR38042.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 397

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/300 (16%), Positives = 104/300 (34%), Gaps = 38/300 (12%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           +Q    +    E+K+  ++I  +  ++ + +  + + +     ++      +K+      
Sbjct: 104 KQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMKEKGFSYNTINNHKRSLKASFYIAI 163

Query: 104 KRKITTESNI--LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
           +     ++         ++       AL E Q   L+  + +   +   + D      + 
Sbjct: 164 QDDYVRKNPFDFKLNEVIEDDTKGKVALTEGQEQALLSFIKIDNVYHKYYDD------VL 217

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPS 205
           +L   GLRISE   LT ++I      + I                      IR VPL   
Sbjct: 218 ILLKTGLRISELCGLTVKDIDFKNEIVHIDHQLLKSKEQGYYIETPKTKSGIRRVPLSEE 277

Query: 206 VRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKP--------LNPGVFQRYIRQLRRYL 254
             KA        P      +      +F   +GKP        L   + ++Y +  +   
Sbjct: 278 TIKAFQRVIKSRPKTKPTQVDGHSDFVFINHKGKPKVAIDYSTLFVRMVKKYNKHHKD-- 335

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
                 T H LRH+F T +     + + +Q I+GH  +S T   Y + + ++    +  +
Sbjct: 336 NPLPHITPHILRHTFCTKMAHRNINPKDLQYIMGHSNISITMDWYAHSSIESAKTEIKRL 395


>gi|16764254|ref|NP_459869.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|169257156|ref|YP_001700534.1| putative bacteriophage integrase [Salmonella phage Fels-1]
 gi|16419401|gb|AAL19828.1| putative Fels-1 prophage integrase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
          Length = 441

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 61/364 (16%), Positives = 117/364 (32%), Gaps = 64/364 (17%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY------TEEKITIQ 61
           EI   EL      WL+  E+E  +SK T+  YE   +  +  L         T+E +   
Sbjct: 90  EITVAELAD---KWLKLKEME--ISKNTMLRYESIIKISVSLLGGRVLASSVTQEDLLFF 144

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
               ++   I     +   +     ++   L  +    ++  +     ++    +  LK+
Sbjct: 145 RKELMTGHHITRPGRELAPKGRSVATVNSYLGVVSGLFQFAARNGYIPQNPFNGITMLKR 204

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           + + P  L+ ++   L+D                   +  L    G+R  E  +L  ++I
Sbjct: 205 AKAEPDPLSREEFARLIDACHHQQIKN----------LWSLAVYTGMRHGELCALAWEDI 254

Query: 182 MDDQSTLRIQG-------------KGDKIRIVPLLPSVRKAI--------------LEYY 214
                TL ++              +    R++ L+     A+              +E  
Sbjct: 255 DLKAGTLIVRRNYTQAKEFTLPKTQAGTDRVIHLVQPAIDALKSQASFTKLSKQHKIEVK 314

Query: 215 DLCPFDLNLNIQLPLFR-------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                    +    +F        G            R      R  GL     A+  RH
Sbjct: 315 LREYGRTKTHSCTFVFNPQITDRSGKSKAHYAAPSLNRIWESALRRAGL-RHRKAYQSRH 373

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV------NSKNGGDWMMEIYDQTHPSI 321
           ++A   L+ G +   I S +GH       +YT        N+++  D + +    T P +
Sbjct: 374 TYACWALAAGANPNFIASQMGHSNAQ--MVYTVYGAWMADNNQSQVDILNQQLASTAPGV 431

Query: 322 TQKD 325
            QKD
Sbjct: 432 PQKD 435


>gi|319778991|ref|YP_004129904.1| Type I restriction-modification system, specificity subunit S
           [Taylorella equigenitalis MCE9]
 gi|317109015|gb|ADU91761.1| Type I restriction-modification system, specificity subunit S
           [Taylorella equigenitalis MCE9]
          Length = 165

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 8/167 (4%)

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
                + R+ AI+ +L   G+RI E + L   +I  ++    + GKG K R+V      +
Sbjct: 2   RDNCTELRDLAIIDMLASTGMRIGEMVLLNRNDINFNERECIVFGKGSKERVVYFDARTK 61

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
             +  Y      D        LF  +R     L  G  +  +R+  + LGL      H  
Sbjct: 62  IHLQNYLKSRKDD-----NPALFVSLREPYSRLKIGGIEARLREYGKKLGLQK-VHPHKF 115

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           R + AT  +  G  +  +Q +LGH ++ TT  Y  V   N      +
Sbjct: 116 RRTLATIAIDKGMPIEQLQQLLGHRKIDTTLQYAMVKQSNVKIAHRK 162


>gi|193213759|ref|YP_001994958.1| integrase domain-containing protein SAM domain-containing protein
           [Chloroherpeton thalassium ATCC 35110]
 gi|193087236|gb|ACF12511.1| integrase domain protein SAM domain protein [Chloroherpeton
           thalassium ATCC 35110]
          Length = 292

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/298 (19%), Positives = 109/298 (36%), Gaps = 25/298 (8%)

Query: 13  ELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           EL  E Q +L + L   +  S+ T  +Y+   R+F  +            +  +    +I
Sbjct: 7   ELEHEIQMFLSEYL---KDKSEETCGTYQRALREFQRYYTVAH-------SWFRFRTQDI 56

Query: 72  RAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRAL 129
             +     + +K+   S+   L+ I+  L YL  +     +    ++  ++        L
Sbjct: 57  EQYKLYLSQYKKLSQVSVSTYLTSIRRLLDYLVAKGKLATNPAKKVKGNRRPTAHTAGTL 116

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +E +A  L++ +        K  D R+   + L+  C     E +     +        R
Sbjct: 117 SEAEAEKLLNVLATE-----KPQDHRDLITIRLMLECAASEHELVKANVMDFQKSAGGYR 171

Query: 190 --IQGKGDKIRIVPLLPSVR--KAILEYYDLCPFDLNLNIQLPLF-RGIRGKPLNPGVFQ 244
             +QGKG K +   +       + I  Y          +  L    R +  + +     +
Sbjct: 172 LFVQGKGKKSKSEIVEMPAALGQEIERYLLRRENVTQSSPLLASHSRRVSNQRMTTRAMR 231

Query: 245 RYIRQLRRYLG-LPLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTN 300
             I+      G L  + TA++LRH+ A   L      L  IQ  + H  +STTQIY  
Sbjct: 232 YRIKHWLEVAGVLRDNITANSLRHTAAKLWLERDKLSLEEIQRKMRHGMISTTQIYAK 289


>gi|325264365|ref|ZP_08131096.1| putative integrase/recombinase, phage integrase family [Clostridium
           sp. D5]
 gi|324030436|gb|EGB91720.1| putative integrase/recombinase, phage integrase family [Clostridium
           sp. D5]
          Length = 279

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/307 (19%), Positives = 124/307 (40%), Gaps = 35/307 (11%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E ++ +  KE +  L  +  E+  S  T++ Y  + +  + FL             R+++
Sbjct: 3   EKITIKKAKEFEKEL--IMSEK--SSATVEKYMRELQNLIEFLDG-----------RKIN 47

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
            + +  + +  +      +++   LS + +FL++    +         ++ +K       
Sbjct: 48  KSRLMEYRNALQLN-YKAQTINVKLSAVNAFLEFTGMSEY-------RIKFMKVQKK-SF 98

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
              E++        LL T+ +   I      IL  L G G+RISE   +T   +   ++ 
Sbjct: 99  IEEERELKEDEYKTLLATARQMGKIRLYY--ILLTLCGTGIRISELKYITANAVRQGRAE 156

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           + ++GK    R+V L   ++  + +Y  L   +     +  +F    G P++       +
Sbjct: 157 INMKGKH---RVVLLPKELKSRLKKYMGLKNIE-----EGCVFITKNGNPVDRSNIFHEM 208

Query: 248 RQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           ++L    G+       H LRH FA    +   +L  +  ILGH  + TT+IY   + +N 
Sbjct: 209 KKLSSAAGVEQQKVYPHNLRHLFARSFYAVEKNLSHLADILGHSSIETTRIYVASSYRNF 268

Query: 307 GDWMMEI 313
              +  +
Sbjct: 269 DRILDRM 275


>gi|282879934|ref|ZP_06288658.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281306176|gb|EFA98212.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
          Length = 406

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 67/319 (21%), Positives = 130/319 (40%), Gaps = 31/319 (9%)

Query: 14  LLKERQNWL----QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLS 67
           LL+    +L    + + I+R L    L++Y+      L  L  Y  +K  +  I   QL 
Sbjct: 110 LLESFGEYLTQTKERIGIDRALKTFKLRTYQ------LSLLREYMRKKHKVSDIPLSQLD 163

Query: 68  YTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
              I  F       +K+   S+  +LS +++ ++   K+ +      L   + ++    P
Sbjct: 164 KAFIEGFEYYLTIDRKLKRSSISSTLSTLQTIVRMAVKKGVLDFYPFLGY-SYERPKGEP 222

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R++ +++   ++D   L    E   I      +       GL IS+  +L  +NI+ ++ 
Sbjct: 223 RSITKEELEHIID---LEIEWENYRIV---RDLFVFSCFTGLAISDVRNLREENIVTEEG 276

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            L I+G+  K +    +  +  A+                +P             +    
Sbjct: 277 ELCIKGRRMKTKTPYRVQVLPPALTIMNRYRGIRAGFVFDVP----------TTDIVLNG 326

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +  ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQ+Y  V+S+ 
Sbjct: 327 MHYIQRNIGMETPLTFHMARHTFASIITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSER 386

Query: 306 GGDWMMEIYDQTHPSITQK 324
               M  I  +   + T K
Sbjct: 387 IHWDMQAIQQRIQDTFTLK 405


>gi|332884389|gb|EGK04652.1| hypothetical protein HMPREF9456_03394 [Dysgonomonas mossii DSM
           22836]
          Length = 407

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 97/277 (35%), Gaps = 20/277 (7%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
            +  T + Y     + L F+             R L  + +  ++          + ++ 
Sbjct: 128 YALSTTKGYLRTVSKLLSFIESKEI------IARDLDPSILVYYVKTLL--GYSPKMVEF 179

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLPRALNEKQALTLVDNVLLHTSHE 148
           +  GI+SFL++L            ++  +K      +P   N      L++ +       
Sbjct: 180 TFCGIRSFLRFLHVSGYIKRDLSNSLPTVKIPQKARIPSTWNPTDLKKLLEVI-----DR 234

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR 207
                 R+ AI+ L    G+R  +  SL   +I  D++ + I Q K  K    PL   + 
Sbjct: 235 GNPSGKRDYAIILLASRLGMRCVDIKSLKFDDIKWDENRIEITQVKTRKPTTYPLSREIG 294

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL----PLSTTAH 263
            A+++Y      +                  +       I++  +   +          H
Sbjct: 295 WALIDYIQKGRPNSEDKNVFVRHTAPICSFGDSSRLMDMIKKYMKMAHISIPQDRKFGMH 354

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +LRH++AT L+     +  I  ++GH   +TT IY  
Sbjct: 355 SLRHTYATSLMERHVPIEEIAQLMGHVDTTTTAIYLK 391


>gi|149911917|ref|ZP_01900516.1| Hypothetical bacteriophage integrase [Moritella sp. PE36]
 gi|149805010|gb|EDM65038.1| Hypothetical bacteriophage integrase [Moritella sp. PE36]
          Length = 322

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 97/259 (37%), Gaps = 36/259 (13%)

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR---SLSGIKSFLKYLKKRKITTES 111
           ++ +      Q++      F + +  +     ++ R    LSG+  F   +   +   E 
Sbjct: 89  DKDLGYPRADQVTKQRFMQFRADKMAKGNKATTINRSQVRLSGV--FTVLIDAGEYHNEH 146

Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
            +  +  LK   S    LN+K+   L+ N+     H  K           L    G R S
Sbjct: 147 PLKGISKLKLRASEMGFLNKKEITQLLSNLSGDELHVAK-----------LCLSTGARWS 195

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           EA  L   +I+  + T     K  K R VP+ P               +++      LF 
Sbjct: 196 EAAELRGNDIIHGRVTFN-DTKNGKNRTVPITPE-----------FMNEIHNGKTGRLFN 243

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
               +      F   ++   +   LP     H LRH+FA+H + NGG++ ++Q ILGH  
Sbjct: 244 SSYME------FYDVLK--AQGFDLPKGQATHVLRHTFASHFMMNGGNILTLQKILGHST 295

Query: 292 LSTTQIYTNVNSKNGGDWM 310
           +  T  Y ++      + M
Sbjct: 296 IMQTMTYAHLAPDYLNEAM 314


>gi|149191711|ref|ZP_01869952.1| hypothetical protein VSAK1_09143 [Vibrio shilonii AK1]
 gi|148834451|gb|EDL51447.1| hypothetical protein VSAK1_09143 [Vibrio shilonii AK1]
          Length = 378

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/267 (19%), Positives = 106/267 (39%), Gaps = 15/267 (5%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           +  + I  ++  ++  F++      + + +L R  + +        +  I  +S +  ++
Sbjct: 123 MGRKRITDVTRRDVEKFLNSL--TGLSNSTLNRYHAFVSKLFSMAVEHDIIDKSPVKGIK 180

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
            L ++N   R L+ ++     ++   H   E  +I A  + +L LL   G+R+   +SLT
Sbjct: 181 KLVENNQKDRVLSSQEM----ESFCRHACAEPNFIHAY-ALMLSLL--TGMRVGNVMSLT 233

Query: 178 PQNIMDDQST-LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
              + DD S+ L    K  K + +      ++ I +   +   D       P  +     
Sbjct: 234 RSMLADDLSSALLPMTKSGKSQRIYFSEPAQRLIRKCLKVSFNDW----VFPSLKNQGEH 289

Query: 237 PLNPGVFQRYIRQLRRYLG-LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
              P      I+Q  +  G L    T H LR + AT +L    D+R +Q  LGH  ++ T
Sbjct: 290 IAYPRACMDRIQQAMKAEGSLEAPFTIHDLRRTQATQMLHVTNDIRLVQQSLGHSNVNVT 349

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           + Y    + +      +  +   P+  
Sbjct: 350 ERYAYYQNNHLAQASQQTVEAMLPNFK 376


>gi|326407773|gb|ADZ64844.1| phage protein, integrase [Lactococcus lactis subsp. lactis CV56]
          Length = 394

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 98/252 (38%), Gaps = 22/252 (8%)

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS---LPRALNE 131
           I+  + +K   ++ K  L+ IK  L Y  +     ++  + +   K         +  ++
Sbjct: 135 ITSGKREKGKGKNYKIMLNIIKRILDYGVQLGAINDNPAIKVFPPKLKVRTVSKIKYFDD 194

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           K+    ++ +    S E    +  ++A+  LL   GLRI EAL+L   +I   +  + + 
Sbjct: 195 KELKMFLEYLE---SLEPSIENQLHNALYRLLLATGLRIGEALALNWSDIDFSEKLVNVT 251

Query: 192 GK-------------GDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKP 237
                              RI+ L  +  + +  +       +  + +   +     G+ 
Sbjct: 252 KTTLQSREVQDSPKTKGSNRIISLDNTTLQILANWRKFQNNHNKVIGLSDSVVFSYDGQR 311

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
           L     +  +        LP +   H  RH+ A+ L++N  + + IQ  LGH +++TT  
Sbjct: 312 LIYESERARLSSHLESARLP-NIGLHGFRHTHASLLMNNDVNPKEIQERLGHSKITTTLD 370

Query: 297 IYTNVNSKNGGD 308
            Y+++      +
Sbjct: 371 TYSHLAKDKKKE 382


>gi|255011581|ref|ZP_05283707.1| putative integrase [Bacteroides fragilis 3_1_12]
 gi|313149409|ref|ZP_07811602.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313138176|gb|EFR55536.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 407

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 56/308 (18%), Positives = 116/308 (37%), Gaps = 41/308 (13%)

Query: 20  NWLQNLEIERGLSKLTLQSY-ECDTR-------QFLIFLAFYTEEKITIQTIRQLSYTEI 71
           N+L   +         + SY + D R       +F  FL               ++   +
Sbjct: 122 NFLDYFQAY-------INSYTKKDIRMVQIAFSRFKDFLKEQYPMNEFSIKPELITKEMM 174

Query: 72  RAFISKRRTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-A 128
             F++  +++ +G   +S+ +     K  ++Y     +  +    ++     S  L +  
Sbjct: 175 EQFVAYLQSRSVGEGAKSIYQRF---KKVIRYAIDHDVMLKDPCKSVTCKVDSQMLRKDV 231

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L+ ++   L+        H          A ++ LY CGLR  +   LT +N+      L
Sbjct: 232 LSPEEIQKLM------ACHYDNENPTIRRAFIFCLY-CGLRFCDVKDLTYKNVDYANRLL 284

Query: 189 RIQ--GKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQR 245
           + +            ++  +   +L      P D N L   LP +              +
Sbjct: 285 KFEQSKTKGHSASSGVVIPLNDGLLSIIGEAPADKNCLIFDLPTYESCC----------K 334

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +++  +  G+    + H  RHSFA ++L+NG +++++ S+LGH  L  T+ YT    K 
Sbjct: 335 SVKRWVKRAGIDKHISWHCARHSFAVNILNNGANIKTVASLLGHNGLKHTEKYTRAVDKL 394

Query: 306 GGDWMMEI 313
             + +  +
Sbjct: 395 KEEAINSL 402


>gi|89147373|gb|ABD62547.1| integrase [uncultured bacterium]
          Length = 163

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/111 (37%), Positives = 58/111 (52%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +G G+      L     +A  E+     F  +     P   GIR   ++P   QR +   
Sbjct: 52  EGHGEVYLPFALARKYPRAGKEWMWQYVFPADRLSNDPRGGGIRRHHVDPRSIQRALHDA 111

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            R  G+    T HTLRHSFATHLL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 112 LRRAGVRKPATPHTLRHSFATHLLESGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|298674118|ref|YP_003725868.1| integrase family protein [Methanohalobium evestigatum Z-7303]
 gi|298287106|gb|ADI73072.1| integrase family protein [Methanohalobium evestigatum Z-7303]
          Length = 382

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/291 (18%), Positives = 108/291 (37%), Gaps = 37/291 (12%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  T+ +Y  +  Q               + I      +I + + K         +    
Sbjct: 43  SPHTVLNYLNNLNQISKMCE---------KPIENFDKDDIISLLGKIEQSGYKPSTKNLY 93

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLPRAL-NEKQALTLVDNVLLHTSHE 148
              +K F+K      +  +     ++  K SN   LP  L  E +A  ++D+        
Sbjct: 94  RVNLKKFIK-----DMELDVPTDIIKTGKNSNQHKLPEDLITEHEAKMMIDST------- 141

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGDKIRIVPLLPS 205
                 R+ A++ +LY    R+ +   L  ++I  ++     LR+ GK    RI  +  +
Sbjct: 142 ---SSLRDKALMSVLYESAARVGDLSELRIKDIDFNKRDGTYLRLDGKTGARRIKLIAST 198

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
               I  + +  P   N N  + L + I+ +PL     +R ++       +      H  
Sbjct: 199 P--YITSWLNNHPEKENQNAPVWLSK-IKNQPLKYQGVRRVLKIAAEKAQIQKDIHPHLF 255

Query: 266 RHSFATHLLSNGGDLRSIQSILG--HFRLSTTQIYTNVNSKNGGDWMMEIY 314
           RHS +T  L+N      ++S +G  H       IY +++ ++    + +I+
Sbjct: 256 RHSRST-FLANHLTPSQLESYMGWEHGS-RMPAIYVHLSGQDLDHAIDKIH 304


>gi|118725028|ref|NP_720381.2| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|112949651|gb|AAN52981.2| site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 456

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 108/275 (39%), Gaps = 21/275 (7%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           R  L  L            +  +++  ++A+  +    + G     R+L  ++S  K   
Sbjct: 117 RSVLPALNRRLLAHFGRYPLHMINHKMVQAWFDEISKTRKGAA--NRNLDTLQSVFKLAL 174

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           ++     +  + +R  K+   L R L+  +   L   +    +         +  +L LL
Sbjct: 175 RQGHCLTNPCIGIRQNKR-RVLNRFLSVAEMQRLSVALDECEAVGGSIAQCAD--VLRLL 231

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
              G R+SE   L  + +  ++  L +       +++ +  +    +  Y+     +L  
Sbjct: 232 LLTGCRLSEITFLKGEYVRGNE--LHLPDSKTGAKVLYIGQAAVDILSRYHCKANTELFP 289

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             Q            +  + Q    +LR+ +G+      H LRH+FA++ + +G  +  +
Sbjct: 290 MKQGA----------STSLVQSLWLRLRKQIGVE-DVRLHDLRHTFASYAVMDGCSIPMV 338

Query: 284 QSILGHFRLSTTQIYTNV---NSKNGGDWMMEIYD 315
            S+LGH +++ T  YT+V   + +   + +  ++ 
Sbjct: 339 ASLLGHKKVTMTLRYTHVGDDSVEQASEVIGAVFK 373


>gi|238023303|ref|YP_002907536.1| Phage integrase family protein [Burkholderia glumae BGR1]
 gi|238023496|ref|YP_002907729.1| Phage integrase family protein [Burkholderia glumae BGR1]
 gi|238025678|ref|YP_002909910.1| Phage integrase family protein8 [Burkholderia glumae BGR1]
 gi|237880343|gb|ACR32674.1| Phage integrase family protein8 [Burkholderia glumae BGR1]
 gi|237880356|gb|ACR32686.1| Phage integrase family protein [Burkholderia glumae BGR1]
 gi|237880549|gb|ACR32878.1| Phage integrase family protein [Burkholderia glumae BGR1]
          Length = 611

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 73/397 (18%), Positives = 131/397 (32%), Gaps = 80/397 (20%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
            N  P         +       L    G +  T ++Y  +  +F+++     E    + +
Sbjct: 223 ANRAPAFPYISAAHDLDAVFAYLHRYDGQAA-TQRAYWRELERFVLWCVL--ERGRPMSS 279

Query: 63  IRQLSYTEIRAFIS----------KRRTQK---------IGDRSLKRSLSGIKSFLKYLK 103
           I        +AF++            R            +   S + ++  +++   +L 
Sbjct: 280 ILVDDCEAYKAFLANPSDTFRGPPASRASGRWRPFALTPLSLDSQRYAVRTLRAAFDWLV 339

Query: 104 KRKITTESNILNMRNLKKSNS-----LPRALNEKQALTLVDNVLLHTSHETKWIDAR--- 155
           K +    +  + + + K         + RAL      + V   L   +            
Sbjct: 340 KVRYLAGNPWVAVTDPKPVKRATKLQVQRALPID-VWSRVRAELAERAEGLGPQGPDWRV 398

Query: 156 NSAILYLLYGCGLRISEAL--------SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
             A++ L+   GLRI EA+            ++       LR+ GKG K RIVPL     
Sbjct: 399 ARALVLLMGDAGLRIEEAVTVERGGLQWWPAEDDTPATWMLRLIGKGSKERIVPLTEDTV 458

Query: 208 KAILEYYDLCPFDLNLN----IQLPLFRGIRGKP---------------------LNPGV 242
           +A+ E++     DL+        +PL       P                       P  
Sbjct: 459 QALREHWQDRGLDLDAPGAAADGVPLVAPTVVPPTPASREKFGVTETGEVTRVAGYTPRA 518

Query: 243 FQRYIRQLRRYL--GLPL----------STTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
            +R + +  R L   LP           +T+ H  RH+F T   + G  +  +Q +LGH 
Sbjct: 519 ARRVVTRALRRLLEQLPDWEESARRQLAATSPHAFRHTFGTQSAAAGMAIEVLQQVLGHG 578

Query: 291 RLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
            L TT IY N   +     M +   + H  +  +  K
Sbjct: 579 SLQTTTIYVNAEQQR----MRQESAKYHARLAARRAK 611


>gi|30019100|ref|NP_830731.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 14579]
 gi|29894643|gb|AAP07932.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 14579]
          Length = 282

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 104/271 (38%), Gaps = 31/271 (11%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           + +L+   ++ +++  R + +   ++++ +  I++ L+     ++ T++    ++  K  
Sbjct: 19  LAKLTSLHMQNYVNSLRDEGLKRGTIEKIIKLIRNSLENAIDLELITKNVAAKIKLSKAD 78

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
                  NE++    +              D+R   + ++    G+R  E L L  +++ 
Sbjct: 79  KEELTVWNEQEVQLFLKA----------AQDSRYYIVFHMALVTGMRQGELLGLRWKDVD 128

Query: 183 DDQSTLRIQ--------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDL-----NL 223
            ++  L I                    +R + L  S    + ++  +   +        
Sbjct: 129 LEKGHLTISQTLSHDGKTFLVGGKTKSSLRKILLPASTVAKLKKHGVVVLKEKLSQGEEY 188

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
           +    +     G  +NP   +R +  L +   +P     H L H+ AT L++ G D++ I
Sbjct: 189 HDNDLVMCTPSGTSINPANVRRSLNALIQNAAVPK-IRFHDLHHTHATLLMAKGVDVKVI 247

Query: 284 QSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
              LGH  +  T   Y++V      D + +I
Sbjct: 248 SERLGHSNIKITLDTYSHVLPTIQEDAVNKI 278


>gi|15804887|ref|NP_290928.1| tyrosine recombinase [Escherichia coli O157:H7 EDL933]
 gi|15834525|ref|NP_313298.1| tyrosine recombinase [Escherichia coli O157:H7 str. Sakai]
 gi|16132133|ref|NP_418732.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli str. K-12 substr. MG1655]
 gi|89111024|ref|AP_004804.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli str. K-12 substr. W3110]
 gi|157163756|ref|YP_001461074.1| tyrosine recombinase [Escherichia coli HS]
 gi|168754878|ref|ZP_02779885.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4401]
 gi|168760553|ref|ZP_02785560.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4501]
 gi|168766587|ref|ZP_02791594.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4486]
 gi|168784949|ref|ZP_02809956.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC869]
 gi|168797878|ref|ZP_02822885.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC508]
 gi|191167175|ref|ZP_03028995.1| type 1 fimbriae regulatory protein FimB [Escherichia coli B7A]
 gi|193063684|ref|ZP_03044772.1| type 1 fimbriae regulatory protein FimB [Escherichia coli E22]
 gi|193070121|ref|ZP_03051067.1| type 1 fimbriae regulatory protein FimB [Escherichia coli E110019]
 gi|194426695|ref|ZP_03059249.1| type 1 fimbriae regulatory protein FimB [Escherichia coli B171]
 gi|195937320|ref|ZP_03082702.1| tyrosine recombinase [Escherichia coli O157:H7 str. EC4024]
 gi|209400483|ref|YP_002273837.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4115]
 gi|209921776|ref|YP_002295860.1| tyrosine recombinase [Escherichia coli SE11]
 gi|217325065|ref|ZP_03441149.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. TW14588]
 gi|218556843|ref|YP_002389757.1| tyrosine recombinase [Escherichia coli IAI1]
 gi|218561488|ref|YP_002394401.1| tyrosine recombinase [Escherichia coli S88]
 gi|218707979|ref|YP_002415498.1| tyrosine recombinase [Escherichia coli UMN026]
 gi|237704053|ref|ZP_04534534.1| tyrosine recombinase [Escherichia sp. 3_2_53FAA]
 gi|256019940|ref|ZP_05433805.1| tyrosine recombinase [Shigella sp. D9]
 gi|256025241|ref|ZP_05439106.1| tyrosine recombinase [Escherichia sp. 4_1_40B]
 gi|260847128|ref|YP_003224906.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O103:H2 str. 12009]
 gi|260858480|ref|YP_003232371.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O26:H11 str. 11368]
 gi|261226670|ref|ZP_05940951.1| tyrosine recombinase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256943|ref|ZP_05949476.1| tyrosine recombinase [Escherichia coli O157:H7 str. FRIK966]
 gi|291285693|ref|YP_003502511.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli O55:H7
           str. CB9615]
 gi|293402969|ref|ZP_06647066.1| tyrosine recombinase [Escherichia coli FVEC1412]
 gi|293407996|ref|ZP_06651836.1| tyrosine recombinase [Escherichia coli B354]
 gi|293417776|ref|ZP_06660398.1| type 1 fimbriae regulatory protein FimB [Escherichia coli B185]
 gi|293476575|ref|ZP_06664983.1| tyrosine recombinase [Escherichia coli B088]
 gi|298378497|ref|ZP_06988381.1| tyrosine recombinase [Escherichia coli FVEC1302]
 gi|300818492|ref|ZP_07098701.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 107-1]
 gi|300823754|ref|ZP_07103879.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 119-7]
 gi|300895833|ref|ZP_07114415.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 198-1]
 gi|300905282|ref|ZP_07123054.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 84-1]
 gi|300926462|ref|ZP_07142258.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 182-1]
 gi|301019653|ref|ZP_07183810.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 196-1]
 gi|301021320|ref|ZP_07185349.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 69-1]
 gi|301305106|ref|ZP_07211206.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 124-1]
 gi|301328031|ref|ZP_07221192.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 78-1]
 gi|307312917|ref|ZP_07592545.1| integrase family protein [Escherichia coli W]
 gi|309795578|ref|ZP_07689994.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 145-7]
 gi|331666125|ref|ZP_08367006.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA271]
 gi|331680415|ref|ZP_08381074.1| type 1 fimbriae regulatory protein FimB [Escherichia coli H591]
 gi|332281082|ref|ZP_08393495.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Shigella sp. D9]
 gi|83286950|sp|P0ADH6|FIMB_ECO57 RecName: Full=Type 1 fimbriae regulatory protein fimB
 gi|83286951|sp|P0ADH5|FIMB_ECOLI RecName: Full=Type 1 fimbriae regulatory protein fimB
 gi|12519319|gb|AAG59494.1|AE005662_6 recombinase involved in phase variation; regulator for fimA
           [Escherichia coli O157:H7 str. EDL933]
 gi|537153|gb|AAA97208.1| recombinase involved in phase variation [Escherichia coli str. K-12
           substr. MG1655]
 gi|1790767|gb|AAC77268.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli str. K-12 substr. MG1655]
 gi|13364749|dbj|BAB38694.1| type 1 fimbriae regulatory recombinase protein FimB [Escherichia
           coli O157:H7 str. Sakai]
 gi|85677055|dbj|BAE78305.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli str. K12 substr. W3110]
 gi|157069436|gb|ABV08691.1| type 1 fimbriae regulatory protein FimB [Escherichia coli HS]
 gi|189357818|gb|EDU76237.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4401]
 gi|189364035|gb|EDU82454.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4486]
 gi|189368888|gb|EDU87304.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4501]
 gi|189374799|gb|EDU93215.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC869]
 gi|189379419|gb|EDU97835.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC508]
 gi|190902832|gb|EDV62561.1| type 1 fimbriae regulatory protein FimB [Escherichia coli B7A]
 gi|192930671|gb|EDV83277.1| type 1 fimbriae regulatory protein FimB [Escherichia coli E22]
 gi|192956574|gb|EDV87031.1| type 1 fimbriae regulatory protein FimB [Escherichia coli E110019]
 gi|194415434|gb|EDX31702.1| type 1 fimbriae regulatory protein FimB [Escherichia coli B171]
 gi|209161883|gb|ACI39316.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4115]
 gi|209749378|gb|ACI72996.1| type 1 fimbriae regulatory recombinase protein FimB [Escherichia
           coli]
 gi|209749380|gb|ACI72997.1| type 1 fimbriae regulatory recombinase protein FimB [Escherichia
           coli]
 gi|209749382|gb|ACI72998.1| type 1 fimbriae regulatory recombinase protein FimB [Escherichia
           coli]
 gi|209749384|gb|ACI72999.1| type 1 fimbriae regulatory recombinase protein FimB [Escherichia
           coli]
 gi|209915035|dbj|BAG80109.1| type-1 fimbriae regulator FimB [Escherichia coli SE11]
 gi|217321286|gb|EEC29710.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. TW14588]
 gi|218363612|emb|CAR01269.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli IAI1]
 gi|218368257|emb|CAR06074.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli S88]
 gi|218435076|emb|CAR16030.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli UMN026]
 gi|226901965|gb|EEH88224.1| tyrosine recombinase [Escherichia sp. 3_2_53FAA]
 gi|257757129|dbj|BAI28631.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O26:H11 str. 11368]
 gi|257762275|dbj|BAI33772.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O103:H2 str. 12009]
 gi|281181463|dbj|BAI57793.1| recombinase FimB [Escherichia coli SE15]
 gi|290765566|gb|ADD59527.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli O55:H7
           str. CB9615]
 gi|291321028|gb|EFE60470.1| tyrosine recombinase [Escherichia coli B088]
 gi|291429884|gb|EFF02898.1| tyrosine recombinase [Escherichia coli FVEC1412]
 gi|291430494|gb|EFF03492.1| type 1 fimbriae regulatory protein FimB [Escherichia coli B185]
 gi|291472247|gb|EFF14729.1| tyrosine recombinase [Escherichia coli B354]
 gi|298280831|gb|EFI22332.1| tyrosine recombinase [Escherichia coli FVEC1302]
 gi|299882114|gb|EFI90325.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 196-1]
 gi|300360249|gb|EFJ76119.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 198-1]
 gi|300398171|gb|EFJ81709.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 69-1]
 gi|300402866|gb|EFJ86404.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 84-1]
 gi|300417569|gb|EFK00880.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 182-1]
 gi|300523666|gb|EFK44735.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 119-7]
 gi|300528896|gb|EFK49958.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 107-1]
 gi|300839611|gb|EFK67371.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 124-1]
 gi|300845478|gb|EFK73238.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 78-1]
 gi|306907085|gb|EFN37592.1| integrase family protein [Escherichia coli W]
 gi|308120702|gb|EFO57964.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 145-7]
 gi|309704782|emb|CBJ04133.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli ETEC H10407]
 gi|315063614|gb|ADT77941.1| tyrosine recombinase/inversion of on/off regulator of FimA
           [Escherichia coli W]
 gi|315255841|gb|EFU35809.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 85-1]
 gi|320190574|gb|EFW65224.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC1212]
 gi|320200579|gb|EFW75165.1| type 1 fimbriae regulatory protein FimB [Escherichia coli EC4100B]
 gi|320639039|gb|EFX08685.1| tyrosine recombinase [Escherichia coli O157:H7 str. G5101]
 gi|320644408|gb|EFX13473.1| tyrosine recombinase [Escherichia coli O157:H- str. 493-89]
 gi|320649726|gb|EFX18250.1| tyrosine recombinase [Escherichia coli O157:H- str. H 2687]
 gi|320654774|gb|EFX22743.1| tyrosine recombinase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320665555|gb|EFX32601.1| tyrosine recombinase [Escherichia coli O157:H7 str. LSU-61]
 gi|323182027|gb|EFZ67438.1| phage integrase family protein [Escherichia coli 1357]
 gi|323380305|gb|ADX52573.1| integrase family protein [Escherichia coli KO11]
 gi|323935244|gb|EGB31597.1| phage integrase [Escherichia coli E1520]
 gi|323945828|gb|EGB41873.1| phage integrase [Escherichia coli H120]
 gi|323950598|gb|EGB46476.1| phage integrase [Escherichia coli H252]
 gi|323960178|gb|EGB55821.1| phage integrase [Escherichia coli H489]
 gi|323975622|gb|EGB70719.1| phage integrase [Escherichia coli TW10509]
 gi|324016930|gb|EGB86149.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 117-3]
 gi|324118515|gb|EGC12408.1| phage integrase [Escherichia coli E1167]
 gi|326345376|gb|EGD69119.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. 1125]
 gi|326346769|gb|EGD70503.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. 1044]
 gi|331066336|gb|EGI38213.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA271]
 gi|331071878|gb|EGI43214.1| type 1 fimbriae regulatory protein FimB [Escherichia coli H591]
 gi|332083283|gb|EGI88514.1| phage integrase family protein [Shigella boydii 5216-82]
 gi|332103434|gb|EGJ06780.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Shigella sp. D9]
          Length = 200

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 66/181 (36%), Gaps = 8/181 (4%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K  N     L   +  +L+       +  T    ARN  +  L +  G R SE   L   
Sbjct: 4   KADNKKRNFLTHSEIESLL------KAANTGPHAARNYCLTLLCFIHGFRASEICRLRIS 57

Query: 180 NIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           +I      + I   K       PLL    +A+  +  +     +   +  +F   +G PL
Sbjct: 58  DIDLKAKCIYIHRLKKGFSTTHPLLNKEVQALKNWLSIRTSYPHAESE-WVFLSRKGNPL 116

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +   F   I       GL L    H LRHS    L + G D R IQ  LGH  +  T  Y
Sbjct: 117 SRQQFYHIISTSGGNAGLSLEIHPHMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWY 176

Query: 299 T 299
           T
Sbjct: 177 T 177


>gi|319937111|ref|ZP_08011518.1| hypothetical protein HMPREF9488_02353 [Coprobacillus sp. 29_1]
 gi|319807477|gb|EFW04070.1| hypothetical protein HMPREF9488_02353 [Coprobacillus sp. 29_1]
          Length = 355

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/281 (19%), Positives = 105/281 (37%), Gaps = 30/281 (10%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           K  I  I +++  + + ++            +   +  +K    +  +      + I ++
Sbjct: 39  KSNISNINKIAIRKYQNYL--LNECNYSVSHVNNLIGVLKQIFNFALENGYIKTNTIASV 96

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             + K   +P+    ++ +  ++  L    +     +  +  I  +L+  G+R  E LSL
Sbjct: 97  SMINKRVKIPK----EKVIWNLEQFLKFNEYIN---NTTDKVIFNMLFFLGIRKGELLSL 149

Query: 177 TPQNIMDDQSTLRIQGKGDKI----------------RIVPLLPSVRKAILEYYDLCPFD 220
               +   Q  ++I    ++                 RIV +   + + I EYY      
Sbjct: 150 RWNEVSFAQKNIKIISTANREKGKGQVITPPKTVHSNRIVVMDKFLCELIEEYYIGQRKI 209

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
              +I+   F     K ++    QR +++      LP   T H  RHS AT L     D+
Sbjct: 210 YGKDIKQK-FVIGGDKMMSFTSLQRLLKKYLAKTQLP-EITLHGFRHSHATMLADFSTDI 267

Query: 281 RSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYD--QTH 318
           ++I   LGH  +  T + Y + NSK       EI    Q+H
Sbjct: 268 KAISERLGHENIEITLKTYIHTNSKAQFKLTKEIERNVQSH 308


>gi|258622064|ref|ZP_05717091.1| phage integrase family protein [Vibrio mimicus VM573]
 gi|258585678|gb|EEW10400.1| phage integrase family protein [Vibrio mimicus VM573]
          Length = 402

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 91/264 (34%), Gaps = 19/264 (7%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
           L  +   K   + +  +   +I+  +     +     ++ R  S +    +   +     
Sbjct: 138 LKLHFYSKWGKKPLTDIGQQDIQKLLDGLL-EGRKPATVNRLRSLVLRMFRLAMEWGYVD 196

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
            +    +R LK++N   R L+  +  + +       +             L      G+R
Sbjct: 197 SNPGQYIRKLKENNVRQRFLSRAEVSSFIKACNEEPNRTQSNA-------LKFALLTGMR 249

Query: 170 ISEALSLTPQ----NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           I E  S   +    +   + S      K    R V L    ++ I +             
Sbjct: 250 IGEITSSKWECLTVDDDGNWSLFLPHTKSGLSRTVLLNHLAKEVINDQRRFQQL-----K 304

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG-GDLRSIQ 284
              +F G           ++   ++++  G+  +   H LRHSFA+ L+++G   L  +Q
Sbjct: 305 NPYIFAGDAPGR-PIAHPKKAFARIKKAAGITDNFRIHDLRHSFASILINSGNATLYDVQ 363

Query: 285 SILGHFRLSTTQIYTNVNSKNGGD 308
            +LGH    T+  Y ++ S    +
Sbjct: 364 HLLGHQSPQTSTRYAHLASSRLRE 387


>gi|254495557|ref|ZP_05108480.1| Phage integrase [Legionella drancourtii LLAP12]
 gi|254355240|gb|EET13852.1| Phage integrase [Legionella drancourtii LLAP12]
          Length = 229

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/215 (22%), Positives = 78/215 (36%), Gaps = 16/215 (7%)

Query: 98  FLKYLKKRKITTESNILNMRNLKKSN----SLPRALNEKQALTLVDNVLLHTSHETKWID 153
           F        +       +M   KK           L   +   L+       +  T    
Sbjct: 21  FYNRSPSTVLRKVCYTRSMMPPKKIKNSLLRAREYLTPTEIDKLI-----VAARRTGRHG 75

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSVRKAILE 212
            R++ ++ L Y  GLR+SE +SL    I  +Q     I+ K       PL  +  +A+  
Sbjct: 76  KRDATMILLAYRHGLRVSELISLCWTQIDLEQGVFHVIRRKNGLSTHHPLFGAELRAL-- 133

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                    +      +F   R  P+    F++ + +      L LS   H LRHS    
Sbjct: 134 ----RQLKRDYPETDYVFMTERKAPITGDTFRKIVARAGEVAKLGLSVHPHMLRHSTGYK 189

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           L ++G D RSIQ  LGH  +  T  YT +++    
Sbjct: 190 LANDGRDTRSIQHYLGHKNIQNTVRYTEMSATRFK 224


>gi|229008032|ref|ZP_04165587.1| DNA integration/recombination/inversion protein [Bacillus mycoides
           Rock1-4]
 gi|228753227|gb|EEM02710.1| DNA integration/recombination/inversion protein [Bacillus mycoides
           Rock1-4]
          Length = 388

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 60/301 (19%), Positives = 112/301 (37%), Gaps = 37/301 (12%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-------EKITIQTIRQLSYTEIRAF-- 74
           + + E+ +   +   Y  D  QF  F+   TE       +       R L    IR +  
Sbjct: 74  HFDQEKRIKDASRTLYARDLSQFYFFIKQSTEFLQQDVKDYEDGCVWRNLRKRHIRNYQR 133

Query: 75  ------ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN--LKKSNSLP 126
                 IS +  +K    ++ R L  I+S+LK+L +     E   + + +  + K +   
Sbjct: 134 WLSEEAISYQSKEKYKPSTISRKLGVIRSYLKWLYEIGYIQEPLHVEILSTTVGKHHKPK 193

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ----NIM 182
           R L+ ++   L+              +  N A+L +L   GLR++E      +    + +
Sbjct: 194 RDLSYEEVKQLLRYY---------QDNEINYALLSILATTGLRVAEVAHAKWEGLEYDAI 244

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNP 240
             +  L +  KGD  RIV +   +   I+ +        N+  +    +F+         
Sbjct: 245 RGRYYLTVDTKGDNERIVSINKEIFNRIVAFRIRRRLPTNIGNKNGGTIFQTKNHTAYRE 304

Query: 241 GVFQRYIRQLRRYLGLPL----STTAHTLRHSFATHLLS-NGGDLRSIQSILGHFRLSTT 295
               +YI ++ +  GLP       T H  RH +  +L          I + +GH    TT
Sbjct: 305 NYLSQYITKIIKDTGLPFTKDIRITPHFFRHFYVQYLYDYKELPPHLIAAAVGHKDDRTT 364

Query: 296 Q 296
           +
Sbjct: 365 K 365


>gi|319950767|ref|ZP_08024657.1| phage integrase family protein [Dietzia cinnamea P4]
 gi|319435568|gb|EFV90798.1| phage integrase family protein [Dietzia cinnamea P4]
          Length = 655

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 61/334 (18%), Positives = 117/334 (35%), Gaps = 36/334 (10%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++  +  E   +L+  +    +   T+ +     + F +FL     +  ++  + +    
Sbjct: 218 ITPSIRDEMVAYLERKKATCQV--KTVSTMATRLKHFGVFLTGIDPDLASVADLDR--RH 273

Query: 70  EIRAFISKRRT-------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM----RN 118
            I  ++S           + I +    R +  + +FL  + +      +    +      
Sbjct: 274 HIEPWLSSLPDSVSDKDGKPISNGDRNRRVIAVMTFLTDITEWGW-DAAPGRKVLFRDDI 332

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            K    LPR L       L   +  H ++E   +       L L   CGLRI E L L  
Sbjct: 333 PKLPQVLPRYLPIDADRRLQQALTTHPANELAALA------LRLQRACGLRIGELLDLEL 386

Query: 179 QN---IMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPF-----DLNLNIQLPL 229
                I  + S L++  GK    R+VPL     + I     +              +   
Sbjct: 387 DCVHEIDGNGSWLKVPLGKMATERMVPLDDQTLELIDRVIQIRSHCQPLPHPRYRRRAQF 446

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
                G+ L     +  +       GL    T+H LRH++AT L++ G  L+++ ++LGH
Sbjct: 447 LFTYLGRRLTQQGVRAELNHAADIAGLD-HITSHQLRHTYATALVNAGVSLQALMALLGH 505

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
                +  Y  +        + E Y++      Q
Sbjct: 506 VSAEMSLRYGRL----FDTTIREEYERALDLAKQ 535


>gi|304393998|ref|ZP_07375922.1| site-specific integrase/recombinase [Ahrensia sp. R2A130]
 gi|303293973|gb|EFL88349.1| site-specific integrase/recombinase [Ahrensia sp. R2A130]
          Length = 367

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 110/276 (39%), Gaps = 18/276 (6%)

Query: 42  DTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY 101
           D  ++  +L  +  +    + +  ++ +E+   ++ RR  ++ + ++ R  S I+     
Sbjct: 79  DLFRYFGWLERHLGKG---KRLAAITDSEVAHLVATRRADRVSNATVNR--SVIEPLRMI 133

Query: 102 LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA-IL 160
            K+ ++  +     +   +            +A  +V    +            + A +L
Sbjct: 134 CKRAELVWKLPAPAIDWKRHRM--------AEAQEVVREASVVEETALFATIRPDYAPVL 185

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL---LPSVRKAILEYYDLC 217
                 G R+SE + LT   +      ++I GKGD+ R +P+   +  + K++  +  L 
Sbjct: 186 AFALVSGCRLSEIVELTWPQVEWFADQMKITGKGDRTRTIPITAAMGEILKSVHGHDPLH 245

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            F                 P+     +   R++R   G+      H LRH+ AT LL + 
Sbjct: 246 VFTYEAMKTRDGRVKGERYPITKSGLKTTWRRMRAASGV-KGLRFHDLRHTAATRLLRST 304

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           G+LR  Q +LGH  +STTQ Y +V   +    M   
Sbjct: 305 GNLRLAQMLLGHSDISTTQRYAHVQMDDLRAGMERA 340


>gi|228942688|ref|ZP_04105218.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228976695|ref|ZP_04137123.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228982383|ref|ZP_04142647.1| Transposase A from transposon Tn554 [Bacillus thuringiensis Bt407]
 gi|228777336|gb|EEM25639.1| Transposase A from transposon Tn554 [Bacillus thuringiensis Bt407]
 gi|228783024|gb|EEM31175.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228816981|gb|EEM63076.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326943312|gb|AEA19207.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           chinensis CT-43]
 gi|326943809|gb|AEA19699.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 372

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 66/361 (18%), Positives = 127/361 (35%), Gaps = 76/361 (21%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E++     +L+  +   G ++ TL+SY    + +  FL           +   +   E+ 
Sbjct: 23  EMIMPVMKFLKY-KDNTGTARNTLRSYCYALKLYFEFLEQKE------LSYTDVGIDELA 75

Query: 73  AFISKRR--------------TQKIGDRSLKRSLSGIKSFLKYLKKR------------- 105
            F+   +              ++K   R++   L  I +F  YL +              
Sbjct: 76  EFVRWLQNPFQNVKVTSIRNNSKKRKARTINIYLDKIYAFYDYLMRHEDYSITLSERLKK 135

Query: 106 -------------KITTESNILN--MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
                          T ++ + +  +  LK S    + L+  +   L+D           
Sbjct: 136 QSSASRGNFKGFLHHTFKNKMKDTKILKLKVSKETLKVLSPDEVQILIDAC--------- 186

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG-----------DKIRI 199
             + R+  +L LLY  G+RI EALSL   +I+     + IQ +G              R 
Sbjct: 187 -CNTRDKFLLVLLYETGMRIGEALSLHLSDIVPTIRKIHIQDRGELINGAEIKTVCSPRT 245

Query: 200 VPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           + +   +      Y      D   +  + + L    +G PL+    Q   ++L+      
Sbjct: 246 LDISKELADLYRRYILEIHTDEIDSDFVFIKLTGDRKGTPLDYASVQSLFKRLKTKT--K 303

Query: 258 LSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYD 315
           +  T H LRH+  T L   G     ++Q   GH  + TT Q+Y +   ++  +   +   
Sbjct: 304 MEVTPHMLRHTNITELWKTGEMRPETLQKRAGHAHIQTTMQMYVHPTMEDIQEDWEKAMK 363

Query: 316 Q 316
           +
Sbjct: 364 K 364


>gi|311109777|ref|YP_003982629.1| phage integrase family protein 7 [Achromobacter xylosoxidans A8]
 gi|310764466|gb|ADP19914.1| phage integrase family protein 7 [Achromobacter xylosoxidans A8]
          Length = 389

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 56/333 (16%), Positives = 111/333 (33%), Gaps = 60/333 (18%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR------------ 79
           S  TL SY  +  + L++     +    +  +        + F++  +            
Sbjct: 50  SPATLASYRKEAERLLLWC--VLQRGAALSDLTHEDLLLYQRFLADPQPAERWVMEPGQK 107

Query: 80  -----------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLP 126
                         +G  SL+++LS + +   +L +      + +   R  ++  +  + 
Sbjct: 108 PGRNSPRWRPFAGPLGPSSLRQALSILNAMFSWLVEAGHLAGNPLALSRRKRRQAAPRVS 167

Query: 127 RALNEKQ---ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM- 182
           R L E+        ++ + + +  E          +  LLY  GLR+SE           
Sbjct: 168 RFLPEEHWDVVKAAIEAMPVGSERERLHASRC-RWLFSLLYIGGLRVSEICDARMGGFFS 226

Query: 183 ------DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD----LNLNIQLPLFRG 232
                  ++  L I GKG K R+VP    +   ++ Y              ++ L +   
Sbjct: 227 RRGADGRERWWLEITGKGSKTRLVPATGELMTELMRYRKAHALSPLPLEGEDMPLVMTLI 286

Query: 233 IRGKPLNPGVFQRYIRQL----------------RRYLGLPLSTTAHTLRHSFATHLLSN 276
              KP+        ++ +                     L    + H +RH+  +HL   
Sbjct: 287 APVKPMARSAIHELVKGVMQAAAAALRRRGSDFGAAAAHLEQ-ASTHWIRHTAGSHLSEK 345

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             DL+ ++  LGH  +STT IY +       D 
Sbjct: 346 -VDLKVVRDNLGHANISTTSIYLHTEDDARHDA 377


>gi|303242126|ref|ZP_07328616.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302590313|gb|EFL60071.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 423

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 73/375 (19%), Positives = 135/375 (36%), Gaps = 62/375 (16%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTR-QFLIFLAFYTEEKITI 60
           E  N      +   +  + W +    ER L+ LT   Y    R   +  +  Y  E+I  
Sbjct: 60  ESGNFQAPTKYTFAQYSEEWKK--SKERELAPLTFYRYCNLLRLHIIPEIGGYKLEEINA 117

Query: 61  QTIRQLSYTEIRAFISKRRTQK-----------IGDRSLKRSLSGIKSFLKYLKKRKITT 109
             +    Y  +R  + +R+ +K           + ++++K     I + L+   ++ +  
Sbjct: 118 LLLDTA-YNNMRE-LKQRKYRKKDGTEKIKDYSLSEQTIKHIHRLIGTILQTAFRKGLIK 175

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
           E+ I            P+  +++Q  +L+  +        +  D +    +++    G R
Sbjct: 176 ENPITRTDVPHVKKKEPKYYDQEQISSLIAAL--------EDTDIQFKTAVHVTLASGCR 227

Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKI----------------RIVPLLPSVRKAI--- 210
           + E L L   +I  D+ T+ I+  G  I                RIV +   V   I   
Sbjct: 228 LGELLGLEWSDIDYDKCTIDIRQAGQYIPGQGVFTKDPKNETSKRIVSMPRPVMDMISHL 287

Query: 211 ------------LEYYDLCPFDLNLNIQL----PLFRGIRGKPLNPGVFQRYIRQLRRYL 254
                        ++      D            LF    G P+ P    +  +      
Sbjct: 288 EYEKKVSKVKLGNKWQGGNIKDKAEREYDGRPNRLFTRADGSPMYPNRLSKQWKAFIDKS 347

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
            LP   T H LRH+ A++L+S G D+ S+   LGH   +TT  IY +   K   +  + +
Sbjct: 348 DLPK-ITFHGLRHTSASYLISCGQDVVSVAKRLGHSSSNTTLSIYAHAFKKRDEEAAVHM 406

Query: 314 YDQTHPSITQKDKKN 328
            D+ +P    K + N
Sbjct: 407 -DKLYPQSEDKQQGN 420


>gi|253569672|ref|ZP_04847081.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840053|gb|EES68135.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 371

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 64/310 (20%), Positives = 120/310 (38%), Gaps = 38/310 (12%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           F+  K + ++L+     + L K   +          +  + +   K T + I      + 
Sbjct: 86  FDKYKLKADFLEYYR--KQLRKHDQKW-----EFVYLHFSNFVHGKCTFEEIDIDLCNKF 138

Query: 72  RAFISK----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
           R ++      RR  +I   S     S  + FLK L +  +   +    +  ++  + +  
Sbjct: 139 REYLLSAKKLRRNGRITRNSASGYWSTFRGFLKILYRNGMIKTNVNDFLEKIETEDVMKE 198

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD---- 183
           AL+ ++   L +        +T         +   +    LRIS+ LSL  ++I+D    
Sbjct: 199 ALSVEELYKLAETPCKKPILKTAS-------LFSCM--TSLRISDILSLCWKDIVDYSAG 249

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
            +    I  K     I+P+       I           N   +  +F+G     L     
Sbjct: 250 GKCVHIITQKNKAEDIIPISEEALGLI---------GYNSEKKGLVFKG-----LMRSWT 295

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           Q  +++  R  G+  + T H+ R +FAT   + G D+R+IQSI+ H  ++TTQ Y  V  
Sbjct: 296 QIPMKEWIRSAGITKNITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVD 355

Query: 304 KNGGDWMMEI 313
            N  +   +I
Sbjct: 356 ANKREASKKI 365


>gi|54308496|ref|YP_129516.1| prophage CP-933V integrase [Photobacterium profundum SS9]
 gi|46912925|emb|CAG19714.1| hypothetical integrase for prophage CP-933V [Photobacterium
           profundum SS9]
          Length = 411

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/348 (16%), Positives = 118/348 (33%), Gaps = 61/348 (17%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + WL    IE  +++ TL +Y    +Q L +L            + QL+   I      
Sbjct: 85  FERWLTLKRIE--VTEATLTNYHNRLKQTLAYLDPELL-------VSQLTQEHILDLRMA 135

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             +      ++   +  IK  L +    +  +   I  +++LK+S S P  L+  +   L
Sbjct: 136 LLS-TCSASTVNTYMRTIKGVLSFAITNEYCSPRVISGIKDLKQSKSPPTPLSRDEFFRL 194

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------ 191
           ++             + ++  +  L    GLR  E ++L  ++I  ++  + ++      
Sbjct: 195 IEACK----------NEQDKHLWALAVYTGLRHGELMALAWEDIDLNKGLIYVKRNLTLK 244

Query: 192 ------GKGDKIRIVPLLPSVRKAILEYYDLCPFDL------NLNIQLPLFRGIRGKPLN 239
                       R++ LL    KA+++   L    L             +         +
Sbjct: 245 GIFKLPKTTAGERVINLLDPAIKALIKQKPLTYMMLPESITVQQREHGKIEIETVHFVFS 304

Query: 240 PGV--------------FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
           P V                       R   +      +  RH+FA  +LS G +   I  
Sbjct: 305 PRVTATKETKSYYFHTSIHDKWTAAIRRARIAYR-KPYQTRHTFACWMLSAGANPTFIAK 363

Query: 286 ILGHFRLSTTQIY------TNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
            +GH      +IY       + +++N  D + + Y +  P +  K  K
Sbjct: 364 QMGHSSAK--EIYQTYGDWVSEHTQNQLDVLNKKYGENAPKMPLKTNK 409


>gi|89147365|gb|ABD62543.1| integrase [uncultured bacterium]
          Length = 163

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 50/100 (50%)

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           L      A  E+     F        P     R   ++  V QR ++   R   +    +
Sbjct: 63  LDRKYLNASKEWAWQYVFPAAKRSIDPRSGKQRRHHISESVLQRVVKGAVRRANIAKPAS 122

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            HTLRHSFATHLL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 123 CHTLRHSFATHLLEDGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|41459|emb|CAA27560.1| fimB [Escherichia coli]
          Length = 200

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 66/181 (36%), Gaps = 8/181 (4%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K  N     L   +  +L+       +  T    ARN  +  L +  G R SE   L   
Sbjct: 4   KADNKKRNFLTHSEIESLL------KAANTGPHAARNYCLTLLCFIHGFRASEICRLRIS 57

Query: 180 NIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           +I      + I   K       PLL    +A+  +  +     +   +  +F   +G PL
Sbjct: 58  DIDLKAKCIYIHRLKKGFSTTHPLLNKDVQALKNWLSIRTSYPHAESE-WVFLSRKGNPL 116

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +   F   I       GL L    H LRHS    L + G D R IQ  LGH  +  T  Y
Sbjct: 117 SRQQFYHIISTSGGNAGLSLEIHPHMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWY 176

Query: 299 T 299
           T
Sbjct: 177 T 177


>gi|306780830|ref|ZP_07419167.1| integrase [Mycobacterium tuberculosis SUMu002]
 gi|306790052|ref|ZP_07428374.1| integrase [Mycobacterium tuberculosis SUMu004]
 gi|306794135|ref|ZP_07432437.1| integrase [Mycobacterium tuberculosis SUMu005]
 gi|308326334|gb|EFP15185.1| integrase [Mycobacterium tuberculosis SUMu002]
 gi|308333494|gb|EFP22345.1| integrase [Mycobacterium tuberculosis SUMu004]
 gi|308337528|gb|EFP26379.1| integrase [Mycobacterium tuberculosis SUMu005]
          Length = 332

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 98/277 (35%), Gaps = 45/277 (16%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQ---------------TIRQLSYTEIRAFISKRRTQK 82
           S+  D   +L+ L    +   TI+                   ++   +  ++ K+  Q 
Sbjct: 71  SWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLLDWLGKQ--QH 128

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +     K   S ++ F  +  +     +    ++  ++     PR           D   
Sbjct: 129 LSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRP-------AGDDVWQ 181

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
              +   + I+     ++ L    GLR +EA      + + D   L + GK  K RIVP+
Sbjct: 182 AALAKADRRIE----LMIRLAGEAGLRRAEAAQAHTGD-LMDGGLLLVHGKDGKRRIVPI 236

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
              +   I +                LF    G  L      + + +      LP   T 
Sbjct: 237 SDYLAALIRD-----------TPHGYLFPNGTGGHLTAEHVGKLVSRA-----LPGDATM 280

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           HTLRH +AT       +LR++Q +LGH  + TT+ YT
Sbjct: 281 HTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYT 317


>gi|303246077|ref|ZP_07332358.1| integrase family protein [Desulfovibrio fructosovorans JJ]
 gi|302492473|gb|EFL52344.1| integrase family protein [Desulfovibrio fructosovorans JJ]
          Length = 339

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 90/242 (37%), Gaps = 25/242 (10%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            + QLS+ ++   +   R       +  R L  +++ L +   + +TT + +   +  ++
Sbjct: 103 PVDQLSFQDVM--LVANRFSLKSIATRNRYLECLRTILNFGINQGLTTNNPMRTWKKARE 160

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI--SEALSLTPQ 179
                + L       ++D                    L +L+  G R   SE   +  +
Sbjct: 161 PKREFK-LTFDDLQRILDK-----------AQPHLKWALEVLWELGTRPGNSELFRIKWE 208

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           +I  D   +RI+G   +     +       + EY+     +     Q        G  + 
Sbjct: 209 DIDYDGDVIRIRGTKTQTSDRLIP------LTEYFKTRLLERQNQAQSEYVIEYNGHKVT 262

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIY 298
               +R  R   +  G+      + +RH FA+ +L+NG DL+++  +LGH     T  +Y
Sbjct: 263 --NVKRSFRSALKEAGISYPVRLYDVRHLFASTMLANGADLKAVSKLLGHSTTRMTADVY 320

Query: 299 TN 300
            +
Sbjct: 321 YH 322


>gi|237710854|ref|ZP_04541335.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|237725668|ref|ZP_04556149.1| tyrosine type site-specific recombinase [Bacteroides sp. D4]
 gi|298385293|ref|ZP_06994852.1| integrase [Bacteroides sp. 1_1_14]
 gi|229435476|gb|EEO45553.1| tyrosine type site-specific recombinase [Bacteroides dorei
           5_1_36/D4]
 gi|229454698|gb|EEO60419.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|298262437|gb|EFI05302.1| integrase [Bacteroides sp. 1_1_14]
          Length = 403

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/296 (17%), Positives = 106/296 (35%), Gaps = 24/296 (8%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L  E+  S  T +  +        FL     E I    I +      + F+  ++     
Sbjct: 117 LRAEQIHSTSTFRQSKTTQLNLQQFLQSRGLEDIAFSDITEEFGHSFKLFL--KKELGYA 174

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
              +   L  +   +       +   + + ++   KK     R ++  +   L+      
Sbjct: 175 SGHVNHCLCWLNRLIYIAVDEGVLRCNPLEDVHYEKKDPPKMRHISRSELKRLM-----A 229

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQG---KGDKIRIV 200
           T      ++      ++     GL  ++  +L P++I    +  L I+    K +    V
Sbjct: 230 TPMPDPKVELARRMFIFSSL-TGLAYADVYNLYPRHIGKTSEGRLYIRKPREKTEVETFV 288

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           PL P+ R+ +  Y          +   P+F   +       +    I  L   LG+  + 
Sbjct: 289 PLHPAARQILELYNT-------TDDTRPVFPLPK-----RDILWYDIHGLGVMLGIQKNL 336

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           + H  RH+F T L+S G  + S   ++GH  +++TQIY  +        M  + ++
Sbjct: 337 SHHAARHTFGTLLVSEGISIESAAKMMGHADINSTQIYAQITDCKISKDMDRLMER 392


>gi|253988205|ref|YP_003039561.1| recombinase, type 1 fimbriae regulatory protein [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|211638801|emb|CAR67418.1| recombinase, type 1 fimbriae regulatory protein [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253779655|emb|CAQ82816.1| recombinase, type 1 fimbriae regulatory protein [Photorhabdus
           asymbiotica]
          Length = 191

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 70/180 (38%), Gaps = 8/180 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L   +   +++               R+  +L + +  G R+SE  +LT  ++     
Sbjct: 5   KFLTRHEIDAILE------KARQGRHAERDYCMLLMCFIHGFRVSELCNLTLSDLDLSSE 58

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            + ++  KG      PL+     A+ ++  +       N    +F   +   ++      
Sbjct: 59  IIHVRRLKGGLSTTHPLISEEINALNQWLKIRKSWREANT-PWVFLSQKSGAISRQQVYG 117

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            +++  +   + +S   H LRH+    L   G D R IQ  LGH  +S T IYT  N K 
Sbjct: 118 LLKRYGKQALVSISPHPHMLRHACGYALADLGRDTRLIQDYLGHRNISHTVIYTASNVKR 177


>gi|296115374|ref|ZP_06834012.1| phage integrase family protein [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978112|gb|EFG84852.1| phage integrase family protein [Gluconacetobacter hansenii ATCC
           23769]
          Length = 383

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 60/280 (21%), Positives = 98/280 (35%), Gaps = 28/280 (10%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            L   T   Y+     F++        K     +  +S  ++  F    R          
Sbjct: 113 HLKPTTQSEYKRAVDLFIV-------PKFGTWRMADISRADVSGFHGDLRQIPYQA---N 162

Query: 90  RSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           R+L  +           I T+  +    ++  K+     R L +++   L    L     
Sbjct: 163 RTLGVLSKMFSLADLWGIRTDGLNPCRGVQRYKEEKRE-RYLTQEEYARL-GATLNEAED 220

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
             + + A     + LL   G R+ E  +L   ++  DQS LR+       +IV +  +  
Sbjct: 221 MPEAVWA-----IRLLILTGCRLREIQTLQWSHVFFDQSELRLPDSKTGAKIVQIGQAAI 275

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             I     L           P     R K       Q+  R++R+  GL      H LRH
Sbjct: 276 NVIKAITRL--------EDNPYVITGRKKGGYLTDLQKPWRRIRKAAGLD-DVRIHDLRH 326

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           SFA+  L  G DL  I  +LGH  + TT  Y ++  +N  
Sbjct: 327 SFASDALEMGADLTMIGHMLGHSDIKTTARYAHLKRENVR 366


>gi|289706258|ref|ZP_06502620.1| site-specific recombinase, phage integrase family [Micrococcus
           luteus SK58]
 gi|289556981|gb|EFD50310.1| site-specific recombinase, phage integrase family [Micrococcus
           luteus SK58]
          Length = 396

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/337 (15%), Positives = 112/337 (33%), Gaps = 62/337 (18%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLS--KLTLQSYECDT-RQFLIFLAFYTEEKI 58
               +P +  F        ++++    RGL     TL  YE +  R FL  L     + I
Sbjct: 65  SAPGMPTLAEF-----FPRYIEH----RGLRCTPGTLAGYEAEAARTFLPRLGELPVDMI 115

Query: 59  TIQTIRQLSYTEIRAFISKRRT-----------------QKIGDRSLKRSLSGIKSFLKY 101
             +T+ +    +++   ++ R                    +  ++++ + + + + L +
Sbjct: 116 DRRTVAEWIRWQLQQPTARWRAAAARAAAATPPRPEPPLATVSPKTVRNAHALLSAVLGF 175

Query: 102 LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
             +  I   +                  ++              +     +      +L 
Sbjct: 176 AVQEGILPANPARGADLP----------DDDVEEERGIFSRAEWARFYAAMSESYQPLLI 225

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK---------------IRIVPLLPSV 206
           +L   G R  EA +L  +++    S + ++    K                R + L    
Sbjct: 226 VLLVTGARWGEATALQVRDLDVAASVIHVRRAWKKGKEGAVLGVPKTARGRRTIMLPDWA 285

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF-QRYIRQLRRYLGLPLSTTAHTL 265
            + +       P          L     G  ++   F +R+ +      G+    T H+L
Sbjct: 286 VETLE------PLAAGRAADEFLLTAPGGGVIHRTNFVERHWKPALAAAGIAKHLTPHSL 339

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           RH+FA+  L +G   + +Q  LGH  L TT ++Y ++
Sbjct: 340 RHTFASWALMDGVPAQVVQHRLGHESLQTTSRVYAHL 376


>gi|257890116|ref|ZP_05669769.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|257826476|gb|EEV53102.1| phage integrase [Enterococcus faecium 1,231,410]
          Length = 400

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/337 (17%), Positives = 118/337 (35%), Gaps = 30/337 (8%)

Query: 1   MEGNNLPEIVSFEL-----LKERQNWLQNL--EIERGLSKLTLQSYECDTRQFLIFLAFY 53
           ME ++  + +  +L     +   + +   L    ER +   T ++ +    + + F   +
Sbjct: 52  METHDFNKTIPNQLCSTNQMTFEEFYKDRLVKWYERQVKSQTYENAQFIFEKRMQFFYHF 111

Query: 54  TEEKITIQTIRQ----LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
               IT   I      LS TE R    K   + +    + R    +K  L    K  +  
Sbjct: 112 RVRDITSHDIEDWLFELSQTESRNSRKKVNGETLSKSYINRIRGHLKIVLDRAVKEGVIA 171

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
           ++ + ++ +L   N         +   +++ +      + K        +  +L+  G+R
Sbjct: 172 KNPVEDVSSLPSENKKVEFWEHSEFQKVMNEL-----KDDKIQTHHRKIVYEMLFYTGIR 226

Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-----------P 218
           I E  +L+  N+  +++T+ I+             S  K    Y  +             
Sbjct: 227 IGELEALSWSNVDFEKNTITIEKTLIYNTKDDWYFSTPKTKCAYRTIGLGKKLSLKLRQW 286

Query: 219 FDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
           +DL   I    +         P   F  ++++  +  G+      H LRHS    L+   
Sbjct: 287 YDLQKRIGNFEYVAQLDGTFTPPYSFANWLKEAAKKAGV-KPIKLHALRHSHVAFLIEQN 345

Query: 278 GDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
               SIQ  LGH  +  T   Y ++ +K+    +  I
Sbjct: 346 IQPLSIQERLGHANIQITLGTYGHLYAKSDQQVVSAI 382


>gi|154000940|gb|ABS57038.1| integrase [uncultured bacterium]
          Length = 158

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 50/94 (53%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 65  RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 124

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 125 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|223369844|gb|ACM88791.1| integrase [uncultured bacterium]
          Length = 163

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 53/122 (43%), Gaps = 9/122 (7%)

Query: 189 RIQGKGDKIRIVPLLPSVR---------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           R++   +  R   L               A  E+     F        P     R   L+
Sbjct: 41  RVRSTWEADRRNGLAGVALPFALARKYPNAGTEWAWQWVFPSRSVSVDPREGVQRRHHLD 100

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           P    + +R      G+    ++HT RHSFATHLL  G D+R+IQ +LGH  +STT IYT
Sbjct: 101 PNTIDKALRVAVAKAGIAKRVSSHTFRHSFATHLLQRGQDIRTIQDLLGHKDVSTTMIYT 160

Query: 300 NV 301
           +V
Sbjct: 161 HV 162


>gi|188526773|gb|ACD62268.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 50/94 (53%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 65  RAGHSWPWSWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 124

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 125 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|295837361|ref|ZP_06824294.1| integrase [Streptomyces sp. SPB74]
 gi|197696127|gb|EDY43060.1| integrase [Streptomyces sp. SPB74]
          Length = 426

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 62/337 (18%), Positives = 114/337 (33%), Gaps = 65/337 (19%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL  + +   L + T   Y    R        +    I  + + +L+  ++R F+   RT
Sbjct: 87  WLDGVAVH-HLRENTHTRYAASIR-------LHLNPGIGAKKLARLTTRDVRTFLDGLRT 138

Query: 81  ------------------------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
                                   +++   ++    + +KS L++  +      +   N+
Sbjct: 139 TCQCCARDRDSVRRSCCAIGQCCGKRLSPLTVTYVHAVLKSALEHAVREDELPRNVARNV 198

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           +         + L   +A  L+     H ++  +       A+  L    GLR  E L L
Sbjct: 199 KTTTPRPRRFQPLTATEAQRLL-----HAANGDRL-----HALYELALRTGLRKGELLGL 248

Query: 177 TPQNIMDDQSTLRIQ----------------GKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
             +++  D  T  I                       R + L      ++  + +    +
Sbjct: 249 HWEDLDLDGGTASIHRSLQRTRSQGLTVLNTKTLASERRIALPTECLSSLKAHQERQQEE 308

Query: 221 LNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
                        +F   +GKPL+P    R  R+L     L  +   H LRHS AT LL 
Sbjct: 309 RQTAGTSWTDNGLVFTTPKGKPLDPTNLTRSFRRLLHGAEL-RTIRFHDLRHSTATLLLE 367

Query: 276 NGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMM 311
            G DL  I+ +LGH  +  T  +Y +V  +     + 
Sbjct: 368 QGVDLVVIKELLGHAHIGVTAGVYAHVRLRLQRQAIE 404


>gi|168703458|ref|ZP_02735735.1| Phage integrase [Gemmata obscuriglobus UQM 2246]
          Length = 363

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/321 (18%), Positives = 113/321 (35%), Gaps = 30/321 (9%)

Query: 7   PEIVSFELLKERQNWLQNLE-IERGLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIR 64
           P      L    + WL++LE  E  L + T      D R+    L F  T   I +  + 
Sbjct: 63  PPSSGITLKAWLERWLKSLEGTE--LRQRT-----KDVRKTATDLYFVPTLGHIRLTDLT 115

Query: 65  QLSYTE-IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
            L  TE ++ + +  +       + +  L+ + + L   K   + T++ IL ++   +  
Sbjct: 116 HLQITEAVKKWTATLK----SASTRRTYLAALSTALNAAKYEGLITDNPILKVKRPPQPK 171

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           ++           ++ + +   +               L    G R+ EAL+L   +   
Sbjct: 172 AVFDPFTVADLNRIIADAVQRPATYPCA----------LYAATGCRMGEALALDVTSFDP 221

Query: 184 DQSTLRIQGKGDKIRIVPLLPS-----VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
              T+ I    D  R      +     V +   +        +      PLF    G+  
Sbjct: 222 AAGTIAITQTQDARRERGPAKTSNSIRVIEVPADARPALVSAIGTRTDGPLFTTPAGRRQ 281

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +    ++   +L   LGL      H  RH+ AT +L+ G  +  + + LG    +  +IY
Sbjct: 282 SKSNVRKAWIRLLNRLGLKYRA-PHKCRHTVATRMLAAGYGIPDVAAYLGDTAETVLRIY 340

Query: 299 TNVNSKNGGDWMMEIYDQTHP 319
              +  + G  M  + D   P
Sbjct: 341 ARPSGASVGAGMQALLDAAKP 361


>gi|261346812|ref|ZP_05974456.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
 gi|282565212|gb|EFB70747.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
          Length = 325

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 99/255 (38%), Gaps = 32/255 (12%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNM 116
           +   T+ QL    +      R    I   ++ R +  +      L+  ++   ++ +  +
Sbjct: 93  LGNPTLNQLGKQTLLEHRGNRLMSGIKATTINRDMYRLSGMFSALETLELLDYKNPLNGL 152

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             LK+       L+E+Q ++L++                      L    G R  E  +L
Sbjct: 153 PPLKEETPEIIFLSEEQIISLLNEF-----------TGDYKLFALLCLSTGARWGEGAAL 201

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
             + + + + T  ++ K  K RI+P+   + + I                 PLF      
Sbjct: 202 HSEQVQNGRVTF-LKTKNGKKRIIPISDKLSEQI-----------KTKDSGPLFD----- 244

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            +N   F+  +R L     LP     H LRH+FA+H + NGG++ +++ ILGH  ++ T 
Sbjct: 245 -INYETFRLALRNLFPE--LPRGQATHVLRHTFASHFVMNGGNIVALKEILGHASINQTM 301

Query: 297 IYTNVNSKNGGDWMM 311
           +Y ++        + 
Sbjct: 302 VYAHLAPDYLELAIK 316


>gi|153930721|ref|YP_001393390.1| putative integrase family protein [Yersinia pseudotuberculosis IP
           31758]
 gi|152958262|gb|ABS45724.1| putative integrase family protein [Yersinia pseudotuberculosis IP
           31758]
          Length = 376

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 60/335 (17%), Positives = 129/335 (38%), Gaps = 59/335 (17%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR--------------- 78
            T ++Y  + +++LI+L+          T+ Q+   ++  + +                 
Sbjct: 45  NTSRNYAREVKRYLIWLSCQG------LTLAQVKIEDVYEYFNLLERPTTEWIIPDKKTD 98

Query: 79  --------RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRA 128
                   +   + +RS+  + + +  F  +L+     T++ I  ++       +   R 
Sbjct: 99  KIYPTQLIKYGGLSNRSINYTHTVLGLFYSFLQDAGYLTKNPINLVKKASATTESEQYRH 158

Query: 129 LNEKQALTLVDNVL--------LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           L+     TL   +L             +     +R   +  LLY  G+R +EA +    +
Sbjct: 159 LDLPAWQTLWTWILGYENRVITEDQPAKMIKKASRYRWVFALLYHSGIRCAEAANALMSD 218

Query: 181 IMDDQST--LRIQGKGDKIRIVPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGK 236
           ++   +T  L++ GKG+K+R+V +   + K ++ Y    L     + +   PL   I+  
Sbjct: 219 LVRKNNTWSLKVTGKGNKMRLVTVNSLLLKELIHYRRSLLLTDYPSSHDDTPLIVSIQKN 278

Query: 237 P---LNPGVFQRYIRQLRRYL-------GLPLST---TAHTLRHSFATHLLSNGGDLRSI 283
               +        I+++   +        +       T H LRH+ ATH    G  L + 
Sbjct: 279 RQGSMTTRTLSSLIKEVTELVCADCQDDQITRQIETMTTHWLRHTNATHRFMAGASLETT 338

Query: 284 QSILGHFRLSTTQIYTNVNSKNGG---DWMMEIYD 315
           Q  LGH    TT+IY   +++      + + +++D
Sbjct: 339 QDELGHADPRTTRIYAKTSNEKRKLDAERLADLFD 373


>gi|89147494|gb|ABD62607.1| integrase [uncultured bacterium]
          Length = 163

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/93 (36%), Positives = 45/93 (48%)

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           A  E+     F        P         +     QR I+   R   +    + HTLRHS
Sbjct: 70  ACREWGWQYVFPSGNISSDPRTGRKSRYHIYSQSIQRAIKMALRKADIIKPASTHTLRHS 129

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           FATH L NG D+R++Q +LGH  +STT IYT+V
Sbjct: 130 FATHFLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|332826344|gb|EGJ99187.1| hypothetical protein HMPREF9455_00511 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 410

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/275 (18%), Positives = 101/275 (36%), Gaps = 29/275 (10%)

Query: 46  FLIFLAFYTEEKITIQTI--RQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYL 102
               +  Y +++     I  ++L+   I  F    RT++     ++   + G+K  +   
Sbjct: 139 LYKHIESYIKQEYKRDDIFLKELNLAFINGFEYYLRTERECSTNTIWMYMIGVKHIVAVA 198

Query: 103 KKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
           +       +     + + +  +     L + +  +LV+  + +  +E          +  
Sbjct: 199 RNSGQLAINPFAGYLISPEVKDR--GFLTKDELNSLVNAKMKNAQYELV------RDLFV 250

Query: 162 LLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
               CGL  S+  +LT  NI    D    +  + +         L  V K I+E Y    
Sbjct: 251 FSCFCGLSYSDVKNLTRDNIQTSFDGHLWIITRRQKTNTDSSIRLLEVPKRIIEKYKGYT 310

Query: 219 FDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSN 276
            D             R  P+   G   + ++++    G+    T H  RH+F T L +S 
Sbjct: 311 RD------------TRVFPMPGNGTCNKILKKIAEQCGIKTRLTYHVARHTFGTLLTISQ 358

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           G  + ++  ++GH  + TTQIY  +  +     M 
Sbjct: 359 GVPIETVSRMMGHTNIKTTQIYAKITKEKISQDME 393


>gi|325840448|ref|ZP_08167047.1| site-specific recombinase, phage integrase family [Turicibacter sp.
           HGF1]
 gi|325490315|gb|EGC92644.1| site-specific recombinase, phage integrase family [Turicibacter sp.
           HGF1]
          Length = 371

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/338 (17%), Positives = 122/338 (36%), Gaps = 48/338 (14%)

Query: 1   MEGNNLPEIVSFELLKERQN-WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
            E   L +  +   ++E  N W++N+   + L   TL  Y    R        +   +I 
Sbjct: 49  FEKQGLVQAATTYTIEEYINYWMENVAEIK-LRYNTLDLYRRAIR-------LHINPEIG 100

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMR 117
              +  +    ++ F +  + + + D  +    + +    K   K+ +   + +  L + 
Sbjct: 101 FLKLNNIKADTLQTFFTT-KQKALSDSYINAIRNILNGTFKLAIKQGLILFNPMHQLELH 159

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             K   +L   +  +    ++D             + R      +    G R  E L+LT
Sbjct: 160 YSKVEKNL-EIITTEHLKIILD----------DISNTRYYIPFIISLHTGARRGEILALT 208

Query: 178 PQNIMDDQSTLRIQG----------------KGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
             +I  +   +                        IR + +   +   + ++ D    + 
Sbjct: 209 WDDIHFETRKITFNKSLLAKDGEGVSLAQTKTKSSIRTILMTQKLITELQQWQDKQNQNK 268

Query: 222 NLNIQLP------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
            L  +        +     G P+NP  F   I ++ + L +P     H LRH+ AT LL 
Sbjct: 269 QLYAEYYYTEHDFVCSNEDGTPINPKRFSTQINRISKRLNIP--IKFHNLRHTHATLLLE 326

Query: 276 NGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMME 312
           +  +++ IQ  LGH  +STT  +Y++V  K   + + +
Sbjct: 327 SDVNIKVIQERLGHSDISTTLNVYSHVTQKTEAEAIAK 364


>gi|89147504|gb|ABD62612.1| integrase [uncultured bacterium]
          Length = 164

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 2/99 (2%)

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            P+  K  +  +      L+L+ +      +R   ++    QR I++     G+    T 
Sbjct: 67  YPNAGKEWIWQHVFAGSRLSLDPRSE--GTVRRHHVHESGLQRSIKKAAISAGITKRVTT 124

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           HTLRHSFATHLL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 125 HTLRHSFATHLLESGADIRTVQELLGHKDVSTTMIYTHV 163


>gi|315930520|gb|EFV09564.1| phage integrase family protein [Campylobacter jejuni subsp. jejuni
           305]
          Length = 187

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 89/182 (48%), Gaps = 10/182 (5%)

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ--S 186
           +++++    +D +    + + K    RN  I+ ++   G+R+SEA+++   +I ++    
Sbjct: 1   MSKEELKKFLDAIE---NADFKNNTIRNKLIIKIIIFTGIRVSEAINIKMGDISEENDLY 57

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            +RI+ KG+K R+V +   +   +L+   +     +      LF   +G PL      R 
Sbjct: 58  IIRIRAKGNKYRVVMIKKELIYDLLKNVSINYISKDA----LLFVNKKGTPLTQSYVSRI 113

Query: 247 IRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           + QL    G+      AH LRH+FAT L     DL  +Q  LGH  L+T++IYT+ ++  
Sbjct: 114 VEQLLFRAGIRKQKNGAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDK 173

Query: 306 GG 307
             
Sbjct: 174 LK 175


>gi|315501682|ref|YP_004080569.1| integrase family protein [Micromonospora sp. L5]
 gi|315408301|gb|ADU06418.1| integrase family protein [Micromonospora sp. L5]
          Length = 424

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 111/352 (31%), Gaps = 64/352 (18%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           E N  P             +L  + +   +   T++ Y             ++ E    +
Sbjct: 55  ESNRDPRAARLTFDAYADQYLTEVAV--NVKARTVERYRSAL--------LHSREFFRGR 104

Query: 62  TIRQLSYTEIRAFISKRRTQKIGD--RSLKRSL---SGIKSFLK-YLKKRKITTESNILN 115
            + ++  ++ RAF +K             +R +   + +++    +    ++  E N L 
Sbjct: 105 PVSEIRTSDCRAFRAKLTDGGCLPEGTRQRRRMTRGNSVRNAYNTFRAVLELAVEDNALP 164

Query: 116 MRNLKKSNSLP-RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
             N      LP R  N +     V                    ++  L   GLR +E  
Sbjct: 165 -TNPAVLRKLPGRKPNREAKFRAVFLDAGEVERAAGAAPEPYGLVIRFLAYTGLRAAELA 223

Query: 175 SLTPQN------IMDDQSTLRIQGKGDKI---------------RIVPLLPSVRKAILEY 213
            L   +          +  + +     K                R V L P + + +  Y
Sbjct: 224 GLDVADVKLWKVKDTWRGYVDVHRTRRKEGGAWVTDTPKSEESTRRVELPPWLAEDLHTY 283

Query: 214 YDLCPFDLNLNIQLPLFRGIRG----------------------KPLNPGVFQR-YIRQL 250
                 +       PLF   +                       +P+ P  F R  +++ 
Sbjct: 284 LT-GTHERADEPGAPLFPNRKPGATYTTNAQGKKVREGFRLNWAEPVEPAAFYRNILKKA 342

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI-YTNV 301
            +  GLP +T  H LRH+FA   LS GGD+  +   +GH    TTQ  Y ++
Sbjct: 343 VQAAGLPEATRLHDLRHTFAALWLSAGGDIHRLSEQMGHASYETTQKFYAHL 394


>gi|262172444|ref|ZP_06040122.1| site-specific recombinase phage integrase family protein [Vibrio
           mimicus MB-451]
 gi|261893520|gb|EEY39506.1| site-specific recombinase phage integrase family protein [Vibrio
           mimicus MB-451]
          Length = 380

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 71/336 (21%), Positives = 123/336 (36%), Gaps = 50/336 (14%)

Query: 11  SFELLKERQNWLQNLEIERGL--SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           S  ++     +L++ +IE G   S  T++S      QF  FL            ++ +  
Sbjct: 27  SGRIMPAETAYLRD-KIESGFWSSVHTVRSNTNSIAQFSSFLEEQEI------PLKDVQI 79

Query: 69  TEIRAFISKRRT----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
             +  + +   T    +++ +R+L   L  I  F+++        +S    +R  K   +
Sbjct: 80  KHLVRWRNSLATKFGYERVSNRTLNVRLRAIVGFIEWALSNNYIQDS-FWGVRVEKLIRT 138

Query: 125 LPRALNEKQA---LTLVDNVLLHTSHETKWIDARN------------SAILYLLYGCGLR 169
                N+KQ    +  +  +L  ++         +              ++ L+ G G+R
Sbjct: 139 GQLNFNQKQQAQRIRTIRLLLTESTCRDPLPTMEDIERFSKKLPKSFRPMMALMLGTGMR 198

Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR-----------KAILEYYDLCP 218
           ISE LS          S L+   +   IR+   + +++           +  L  YD   
Sbjct: 199 ISEVLSAPMSAFPSYASVLKDPNRMYSIRLDSRVMTIKNNKTRTVFIPGRLFLTIYDQVS 258

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG- 277
             L    Q   F     +   P   Q+  ++     GL  S T HTLRH FAT  L    
Sbjct: 259 PSLYAGNQSLFFANENHQAWTPSTIQKSFKRASNLAGLRYSITPHTLRHVFATGTLEQWQ 318

Query: 278 --------GDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
                     L  +Q  LGH  +STT  IY N+ S+
Sbjct: 319 ESGFSSEMACLIWLQKQLGHSHVSTTANIYINMTSE 354


>gi|298244308|ref|ZP_06968114.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297551789|gb|EFH85654.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 378

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 60/321 (18%), Positives = 121/321 (37%), Gaps = 42/321 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L+    E     + +++YE     +   +  +    +    +++L+   ++ F + 
Sbjct: 65  IKHYLEYWLEEVHRQNIRIRTYER----YEEIVRLHLVPALGHHMLQKLAPQHLQTFYNS 120

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +  + +   ++    + +   L +  + ++   +    +   ++ +     LN +QA   
Sbjct: 121 KLREGLSATTVISFHNVLHKALDHAMRWRLMAYNVCDLVSPPRRKHIELETLNMEQAQQF 180

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL--------- 188
           +  V  H             A+  L  G G+R  E + L  ++I      L         
Sbjct: 181 LSAVRDHPQE----------ALFLLAIGTGMRRGEIMGLKWRDIDLATRRLQVRRVLTRI 230

Query: 189 --RIQGKGDKI---------RIVPLLPSVRKAILEYYDLCPFDL-----NLNIQLPLFRG 232
             RI GKG            R + L   V + + ++                    +F  
Sbjct: 231 PSRISGKGYIEDEPKSEKSRRNIVLPSFVLEGLKQHRVRQLEAKLKAGPRWEEHDYVFCT 290

Query: 233 IRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
             G  +NP    Q   ++L +  GLP +   H LRHS AT +LS G   + +Q ILGH R
Sbjct: 291 SVGTHVNPDRDIQEPFKKLLKKAGLP-NIRFHDLRHSAATLMLSMGVHPKIVQEILGHSR 349

Query: 292 LSTT-QIYTNVNSKNGGDWMM 311
           ++ T  +Y++V      D M 
Sbjct: 350 INMTLDVYSHVLPTMQKDAMR 370


>gi|260871032|ref|YP_003237434.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O111:H- str. 11128]
 gi|257767388|dbj|BAI38883.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O111:H- str. 11128]
 gi|323176200|gb|EFZ61792.1| phage integrase family protein [Escherichia coli 1180]
          Length = 200

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 66/181 (36%), Gaps = 8/181 (4%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K  N     L   +  +L+       +  T    ARN  +  L +  G R SE   L   
Sbjct: 4   KADNKKRNFLTHSEIESLL------KAANTGPHAARNYCLTLLCFIHGFRASEICRLRIS 57

Query: 180 NIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           +I      + I   K       PLL    +A+  +  +     +   +  +F   +G PL
Sbjct: 58  DIDLKAKCIYIHRLKKGFSTTHPLLNKEVQALKSWLSIRTSYPHAESE-WVFLSRKGNPL 116

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +   F   I       GL L    H LRHS    L + G D R IQ  LGH  +  T  Y
Sbjct: 117 SRQQFYHIISTSGGNAGLSLEIHPHMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWY 176

Query: 299 T 299
           T
Sbjct: 177 T 177


>gi|256839902|ref|ZP_05545411.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
 gi|256738832|gb|EEU52157.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
          Length = 414

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 64/316 (20%), Positives = 132/316 (41%), Gaps = 23/316 (7%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L+ L+ +R  S  TL++Y     +   F+     E++T++ I +        ++  R   
Sbjct: 18  LEALKGQR--SVQTLENYHSSINKVKEFVGD-GWERLTVEDITRCWTDRFTTWLESRH-- 72

Query: 82  KIGDRSLKRSLSGIKSFLKYLK--KRKITTESNILNMRNLKKSNSLP--RALNEKQALTL 137
               +++   L   ++   +        T               S P  RAL++++   L
Sbjct: 73  GDKPQTVDFYLRTFRALYGHALALSDNKTDGKPFGGHHT---GGSFPAKRALHKEEVQRL 129

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +   L  T  E +        +L++LY  G+   +  +LT + ++ D+    ++ K    
Sbjct: 130 LSPALRQTLPENRREALD--VLLFILYARGMVFKDVYNLTRR-MVTDRHIRYLRSKTGVP 186

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP----GVFQRYIRQLRRY 253
             V ++P + + +  YY      +   +   + +G  GK L+         R  R++ R 
Sbjct: 187 IDVEVVPELEEIMKRYYREDSPFVFPFLHE-VRKGCPGKELSEESALRRINRSTREIGRK 245

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT-NVNSKNGGDWMME 312
            GL +  T + LRH++AT +L +   +  I   +GH  + TTQIY   ++S+     +  
Sbjct: 246 TGLSVPLTTYVLRHTWATLMLEDCQPVELISQCMGHSSIRTTQIYLSRISSRKVDTAVNG 305

Query: 313 IYDQT--HPSITQKDK 326
           +YD+    P   +K++
Sbjct: 306 MYDRMLRQPGHKRKER 321


>gi|255306186|ref|ZP_05350358.1| integrase [Clostridium difficile ATCC 43255]
          Length = 396

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 104/294 (35%), Gaps = 30/294 (10%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           RQ+L  +     + + ++ I  +  ++ + +  +   +    +++      +K+      
Sbjct: 107 RQYL--MNALENDPLGMRAIDTVKQSDAKEWAIRMNDKGYSYKTIDNYKRSLKASFYMAI 164

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           +     ++      N K S+ L      K  LT      L    ET  + ++    + LL
Sbjct: 165 QDDCIRKNPF----NFKLSDVLEDDTEAKVILTPEQEEKLLAFMETDNVYSKYHDEVILL 220

Query: 164 YGCGLRISEALSLTPQNIMDDQ---------------STLRIQGKGDKIRIVPLLPSVRK 208
              GLRISE   LT    M ++                 +      +  R +PL     +
Sbjct: 221 LETGLRISELCGLTTHIDMLNRVINIDHQLLRDTEVGYYISTPKTKNGKRELPLTERAYQ 280

Query: 209 AILEYYDLCPFDLNL---NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS-----T 260
           A+            L        LF    G P   G ++  +R L +             
Sbjct: 281 ALERILKNRGKAQPLVVDGYSNFLFLNREGLPKVAGNYESMVRGLIKKYNKTHKDKLPNI 340

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
           T H+ RH++ T++ + G +  ++Q I+GH  ++ T   Y +   ++    +  +
Sbjct: 341 TPHSFRHTYCTNMANKGMNPNTLQYIMGHANITMTLGYYAHGTFQSAKAELERL 394


>gi|323965421|gb|EGB60876.1| phage integrase [Escherichia coli M863]
 gi|327250220|gb|EGE61939.1| phage integrase family protein [Escherichia coli STEC_7v]
          Length = 200

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 66/181 (36%), Gaps = 8/181 (4%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K  N     L   +  +L+       +  T    ARN  +  L +  G R SE   L   
Sbjct: 4   KADNKKRNFLTHSEIESLL------KAANTGPHAARNYCLTLLCFIHGFRASEICRLRIS 57

Query: 180 NIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           +I      + I   K       PLL    +A+  +  +     +   +  +F   +G PL
Sbjct: 58  DIDLKAKCIYIHRLKKGFSTTHPLLNKEVQALKNWLSIRTSYPHAESE-WVFLSRKGNPL 116

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +   F   I       GL L    H LRHS    L + G D R IQ  LGH  +  T  Y
Sbjct: 117 SRQQFYHIISTSGGNAGLSLEIHPHMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWY 176

Query: 299 T 299
           T
Sbjct: 177 T 177


>gi|257088813|ref|ZP_05583174.1| phage integrase [Enterococcus faecalis CH188]
 gi|281416435|ref|YP_003347355.1| integrase [Enterococcus phage phiFL4A]
 gi|256997625|gb|EEU84145.1| phage integrase [Enterococcus faecalis CH188]
 gi|270209611|gb|ACZ64150.1| integrase [Enterococcus phage phiFL4A]
 gi|315160617|gb|EFU04634.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0645]
 gi|315579463|gb|EFU91654.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0630]
          Length = 404

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/318 (16%), Positives = 108/318 (33%), Gaps = 23/318 (7%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +++KE  +++Q+ + +      TL  Y       L       ++K     I+ L++ +I+
Sbjct: 86  DMIKEWFDYIQDPKSKERKKGSTLSGYSYGIDSLLNEFLVIEKDKR----IQDLTFDDIQ 141

Query: 73  AFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           AF  +     +     +KR  + I+       K++     + +N+  +         L  
Sbjct: 142 AFYDRMIFDFEYQKSYIKRFRAIIRGAFTLAYKKRYIKNLDAINLSKIVTPAKTVDDLIN 201

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSA-ILYLLYGCGLRISEALSLTPQNIMD----DQS 186
           +Q    ++        +           +L L +  G+R  E ++L  +N  D    D  
Sbjct: 202 EQVPRYLEKAEAEQIFQVLNEYNPLYTQMLELQFHTGMRFGELIALESKNFHDGFLLDIH 261

Query: 187 TLRIQGKGDKIRIVPLLPSVRKA------------ILEYYDLCPFDLNLNIQLPLFRGIR 234
                      R   + P  RK+            I++        +       LF    
Sbjct: 262 GTYDHATRSHTRGQKVPPKTRKSFRTIELGDAAVQIIKDRMYHNHFIKNKCSDFLFVTSN 321

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            +P + G    +I   +         + H  RH+  + L      ++ I   +GH    T
Sbjct: 322 DRPYDLGTINSFIASHQIEFNTSTKVSTHVFRHTHISMLAEKSIPIQVIMDRVGHEDRET 381

Query: 295 TQ-IYTNVNSKNGGDWMM 311
           T+ IY +V  K   D + 
Sbjct: 382 TEKIYMHVTKKQKTDLVK 399


>gi|119714032|ref|YP_919174.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119525941|gb|ABL79311.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 375

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 57/275 (20%), Positives = 100/275 (36%), Gaps = 41/275 (14%)

Query: 69  TEIRAFI-SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK---------------ITTESN 112
            +   ++ + RR + +   ++    + +  F +++  R                I   + 
Sbjct: 70  EDADRYLRTARRERGLARSTVAGKAASLAKFYEFVIVRYQGDIHALFDQVMVQPIDEFNR 129

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI-DARNSAILYLLYGCGLRIS 171
              +         PRA    +   L +          K++  AR+     L    GLRI+
Sbjct: 130 PRAIAAATSGRIPPRA---DEVRDLFEGWRDSLPEARKYLPAARDYLAASLWRRIGLRIN 186

Query: 172 EALSLTPQNIMDDQST---LRIQ------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           E + L   +   +  T   L ++      G+G K+RIVP +  V   +  +         
Sbjct: 187 ETVMLDVGDWHPELGTHGKLHVRHGKGSRGRGAKVRIVPAIDEVDALLEWWLTDVRPQFG 246

Query: 223 LNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLG---------LPLSTTAHTLRHSFA 270
            + + P   L    R  P+     +     LR  +G              + H LRH  A
Sbjct: 247 DDYEDPNAPLLPSERRDPMTGHCTRIGAEALRTGMGEAVGRWLPGWTGRLSPHVLRHYCA 306

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +HL   G  L++IQ +LGH  LSTT  Y +V S +
Sbjct: 307 SHLYEQGMTLKAIQELLGHGWLSTTTQYIHVRSTH 341


>gi|229060140|ref|ZP_04197510.1| DNA integration/recombination/invertion protein [Bacillus cereus
           AH603]
 gi|228719180|gb|EEL70790.1| DNA integration/recombination/invertion protein [Bacillus cereus
           AH603]
          Length = 249

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 98/256 (38%), Gaps = 31/256 (12%)

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
            R + +   ++++ +  I++ L++    ++ +++     +  K         NEK+    
Sbjct: 1   MRDEGLKRGTIEKIIKVIRNSLEHAIDIELISKNVAAKTKLPKADKEELTVWNEKEVQLF 60

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +              D+R S + +L    G+R  E L L  +++  ++  L I+      
Sbjct: 61  LKA----------AQDSRYSIVFHLALVTGMRQGELLGLRWKDVDLEKGHLTIRQTLSHD 110

Query: 198 --------------RIVPLLPSVRKAILEYYDLCPFDL-----NLNIQLPLFRGIRGKPL 238
                         R + L  S    + ++  +   ++            +     G P+
Sbjct: 111 GKTFLLGGKIKSSLRKILLPASTIAKLRKHRAVVLKEMLSQGGEYQENDLVMCTPSGTPI 170

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QI 297
           NP   +R +  L +   +P     H LRH+ AT LL+ G +++ I   LGH  +  T   
Sbjct: 171 NPANVRRSLNALIQKAAVPK-VRFHDLRHTHATLLLAKGVNVKVISERLGHSNIKITLDT 229

Query: 298 YTNVNSKNGGDWMMEI 313
           Y++V      D + +I
Sbjct: 230 YSHVLPTMQEDAVNKI 245


>gi|284989998|ref|YP_003408552.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284063243|gb|ADB74181.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 371

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 65/287 (22%), Positives = 110/287 (38%), Gaps = 27/287 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDT-RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
            W   LE   G S  T+Q+Y     RQ L  L            +R+LS   +   ++  
Sbjct: 81  KWFSELE---GKSPSTMQAYRDRLDRQVLPALGSVR--------VRELSVGLLDRHLAAV 129

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-RNLKKSNSLPRALNEKQALTL 137
           R    G    K + S I        +      +   ++ R   ++   PRAL   +  ++
Sbjct: 130 RASH-GPALAKMTKSVISGMCGLACRHDALKANPCRDVARIPSQTRRAPRALTADEVRSV 188

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----- 192
                L      +  D  +  ++  +   GLRI EA +++  ++  D  T+ + G     
Sbjct: 189 RAW--LSEDATARERDMPD--LVAFMVATGLRIGEACAVSWPDVDLDADTVTVTGTVLRV 244

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN--IQLPLFRGIRGKPL-NPGVFQRYIRQ 249
           KG  + +        + +LE    C   L        P+F   R + L +P   +R +R+
Sbjct: 245 KGQGLVVSQPKSMAGERVLELPSWCVALLRRRGPSSGPVFPAPRSRKLRDPNNTRRALRE 304

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
               +G+P   T+H  R + AT +   G   RS    LGH + S TQ
Sbjct: 305 AFHAMGMP-GVTSHAFRKTVATLMDEAGLSARSAADQLGHAKPSVTQ 350


>gi|319401403|gb|EFV89613.1| phage integrase family protein [Staphylococcus epidermidis FRI909]
          Length = 374

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/280 (18%), Positives = 106/280 (37%), Gaps = 34/280 (12%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN----ILNMR 117
            I+ ++ +  ++FI+    +     +L ++ + +K  L+  K  ++   +      LN +
Sbjct: 100 NIKDITPSMHQSFINHLIEKGYSKSTLSKTHNLLKRSLERAKYDRLIYFNPCEGITLNHK 159

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           +LK  +   + L + +    +  V        K  D     +   L   G+RI EA +L 
Sbjct: 160 DLKIKDKA-KYLPKDKVKPFLAMV--------KKRDVYQYFLFRTLIETGMRIGEASALC 210

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVR------------------KAILEYYDLCPF 219
            ++      T+ I    ++ R        +                  K +     +   
Sbjct: 211 WKDYDRKLKTISITKSYNQKRNKFGPTKNKENRIIFISNELANELFKLKTLQNGNKIANS 270

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-GLPLSTTAHTLRHSFATHLLSNGG 278
           D   N    +F    G+PL        +  + + L G     + H LRH+ AT LL +  
Sbjct: 271 DFYNNSYDYIFCNEFGEPLPRSTTHNTMMYVTKKLLGKGNELSIHKLRHTHATLLLESNV 330

Query: 279 DLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQT 317
            ++ IQ  LGH   + T ++Y++V  K   D   E +++ 
Sbjct: 331 PMKVIQERLGHKSEAITSEVYSHVTKKM-NDNAKENFEKY 369


>gi|296163767|ref|ZP_06846470.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295885988|gb|EFG65903.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 308

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 17/230 (7%)

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
              LS ++ F KYL+    + E    ++   +   + P    E++ + L+      ++  
Sbjct: 65  AYRLSAVRGFTKYLQATNPSIEVPPSDLLPWRPHRACPYLYREEEIIALIK---AASALR 121

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVR 207
           +    A   +++ LL   G+R+ EA++L  Q+      TL I+  K +K+R +PL P+  
Sbjct: 122 SPLRVATYQSLIGLLAVTGMRVGEAINLDLQDFDARNGTLIIRRAKFNKMREIPLHPTTV 181

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA----- 262
            ++  Y        +      LF    G  L     Q   +++ R  GL   TT      
Sbjct: 182 ASLKRYLARRNRMASAEGTSALFISPTGNRLLYCNVQWTFQRVARQAGLVSRTTHCRPRI 241

Query: 263 HTLRHSFATH-LLSNGGD-------LRSIQSILGHFRLSTTQIYTNVNSK 304
           H +RH+FA + +L    D       L  + + LGH   ++T  Y +   +
Sbjct: 242 HDMRHAFAVNTMLEAYRDGSNTQQRLTLLSTYLGHVSPASTYWYLSAAPE 291


>gi|191637856|ref|YP_001987022.1| Integrase [Lactobacillus casei BL23]
 gi|18148988|dbj|BAB83530.1| integrase [Bacteriophage PL-2]
 gi|190712158|emb|CAQ66164.1| Integrase [Lactobacillus casei BL23]
 gi|327381925|gb|AEA53401.1| Type I restriction modification DNA specificity domain protein
           [Lactobacillus casei LC2W]
 gi|327385085|gb|AEA56559.1| Type I restriction modification DNA specificity domain protein
           [Lactobacillus casei BD-II]
          Length = 383

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 55/338 (16%), Positives = 110/338 (32%), Gaps = 45/338 (13%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +           W++  +I R  S++T + Y          +A Y  E      +  +  
Sbjct: 55  VSDPTFADYFDKWIEAYKIGRH-SEVTDEWY--------TIVAGYIREYFKDTKLSVIDR 105

Query: 69  TEIRAFISK-------RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           T  +AF+         R  Q +   ++ R  S +++ LK   +  +T            K
Sbjct: 106 TAYQAFLDWLGTNPRKRSEQPLSRSTVSRVNSYVRAVLKDAIEDGLTKHDFTRRAIISGK 165

Query: 122 SNSLP--RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
               P  + L+ ++   +++    H           N  +L + Y  G R  EA+ ++  
Sbjct: 166 PAKDPSAKFLSVEEFKHVIEIADRHA----DLSHLSNYVVLIMAY-TGARFEEAIGISWD 220

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPS---------------------VRKAILEYYDLCP 218
            +   + T+ I       +                            +++   E  +   
Sbjct: 221 RVNFKEQTITIDRSWQYKKRKQHDNFGGLKNAQSLRTVPIPSQLVLILKRLRKEQQENAL 280

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
            D   +    + R    + +        +++L  Y       T+H LRHS  + LL  G 
Sbjct: 281 KDGYRDSDNLVCRNDWHRVVTNETVNNTVKRLCGYAKTKNVITSHGLRHSHGSMLLFAGV 340

Query: 279 DLRSIQSILGHFRLSTTQI-YTNVNSKNGGDWMMEIYD 315
           D+ +I   LGH  +  T   Y +   +       +I D
Sbjct: 341 DIMAISRRLGHASIQITMRVYLHEVDEMKQRDDKKIID 378


>gi|320162129|ref|YP_004175354.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
 gi|319995983|dbj|BAJ64754.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
          Length = 103

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 45/72 (62%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R   L+P   QR ++   + +G+    + HT RH FATHLL  G D+R++Q +LGH  +
Sbjct: 21  VRRHHLDPSGLQRAVKAAAKLVGIDKPVSPHTFRHCFATHLLEAGYDIRTVQELLGHKDV 80

Query: 293 STTQIYTNVNSK 304
            TT IYT+V ++
Sbjct: 81  KTTMIYTHVLNR 92


>gi|257891971|ref|ZP_05671624.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|257828331|gb|EEV54957.1| phage integrase [Enterococcus faecium 1,231,410]
          Length = 344

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 75/237 (31%), Gaps = 36/237 (15%)

Query: 99  LKYLKKRKITTESNILNMRNLK-----KSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
             Y    +I T + +  +   +       +       +++ +  ++ +            
Sbjct: 95  FDYAASLQIITSNPMKLVSIPRGEALDIEDKNIEFYTKEELIEFLEAIRNDDDER----- 149

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------------GDKI 197
                   LL   G+R  EA +LT  +I     TL I                       
Sbjct: 150 ---YLFFSLLAFTGIRKGEAFALTWSDIDFKSKTLNINKTVTRGYQGRLIVNTPKSKSGK 206

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG---IRGKPLNPGVFQRYIRQLRRYL 254
           R + L   +   + +YY      + +  +  +F     +    ++        +      
Sbjct: 207 RKIYLDNDLISLLRKYYTKNKTIVTIQSENLIFHHDGLLYNPTVSRSWLNVIYKHHPE-- 264

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWM 310
            L    T H  RH+ A+ L  +G  L+ +Q  LGH  + TT  IYT+V        +
Sbjct: 265 -LTKRITTHGFRHTHASLLFESGASLKDVQERLGHADIQTTSNIYTHVTETQNKKVI 320


>gi|153811898|ref|ZP_01964566.1| hypothetical protein RUMOBE_02291 [Ruminococcus obeum ATCC 29174]
 gi|149832032|gb|EDM87117.1| hypothetical protein RUMOBE_02291 [Ruminococcus obeum ATCC 29174]
          Length = 388

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/323 (15%), Positives = 112/323 (34%), Gaps = 55/323 (17%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSF 98
                 ++     Y  +    + I ++ Y+++  F       +K+   +L+   + +   
Sbjct: 65  RTTYTNYMYMYDHYVRDSFGKKKIGEIKYSDVLYFYYHLINERKLQVNTLETIHTVLHPT 124

Query: 99  LKYLKKRKITTESNILNM-----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            +   +  I   +    +     +   +++ +  AL  +Q    ++            + 
Sbjct: 125 FQLAVRDDIIRNNPSHGVMSEIKKKPGRNHGVRHALTVEQQRAFMNYT------SNSPVF 178

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG--------------------- 192
              + +  +L G G RI E + +  ++I  ++  + I                       
Sbjct: 179 NHWAPLFTVLLGTGCRIGEIIGIRWEDIDLEKRLININHSVTYYPRRAETTKCEFAVSLP 238

Query: 193 -KGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-----NIQLPLFRGIRGKPLNPGVFQRY 246
                IR VP++  V  A +E Y+    +         ++  +F    G   NP    R 
Sbjct: 239 KTEAGIRTVPMMEPVYNAFMEEYEYQKENGFSTVTLDGMEGFIFTNRFGNLHNPQAVNRT 298

Query: 247 IRQLRRYLG---------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           I+++R                   +    + H LRH+F T    N  +++ IQ+++GH  
Sbjct: 299 IKRIRENYNAEEILKAKKEKREPIIIPHFSCHHLRHTFCTRFCENETNIKVIQAVMGHAN 358

Query: 292 LSTTQ-IYTNVNSKNGGDWMMEI 313
           + TT  IY  V      + + ++
Sbjct: 359 IETTMDIYAEVTDMKKTEAIEKL 381


>gi|215408008|emb|CAS02331.1| integron integrase [uncultured bacterium]
          Length = 159

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 50/94 (53%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 65  RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 124

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 125 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|170690855|ref|ZP_02882021.1| integrase family protein [Burkholderia graminis C4D1M]
 gi|170144104|gb|EDT12266.1| integrase family protein [Burkholderia graminis C4D1M]
          Length = 314

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/309 (17%), Positives = 105/309 (33%), Gaps = 34/309 (11%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
             + ++R LS    ++ +   RQF   +            I  +    +  F+     Q 
Sbjct: 9   AYVAMQRSLSLR-FEAADRLLRQFAHQMGNVG--------IADVRPDAVVEFL-----QG 54

Query: 83  IGD--RSLKRSLSGIKSFLKYLKKRKITTESN-ILNMRNLKKSNSLPRALNEKQALTLVD 139
            G    + +   + +    ++   R  +       N+  L    + P   +  +   L+D
Sbjct: 55  TGPLTATWRLKYNVLAGLYRFAISRGYSETCPLPANVPKLPPPQT-PYVYSTAELRRLID 113

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR 198
              L  ++ +    +    ++ LLYG GLRI EAL LT  +       + +   K  K R
Sbjct: 114 ATPLLYNYRSPQQASMYRTLILLLYGSGLRIGEALRLTILDADLIDRVITVHDTKFFKTR 173

Query: 199 IVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           +VP+   +   +  + +      +       LF    G            ++LR+   + 
Sbjct: 174 LVPIGQRLSTELATHIERRRGLPMPEGNNSRLFTSRTGHGWPYSQVITLFQRLRQMAKIE 233

Query: 258 LS---TTA---HTLRHSFATH----LLSNGGD----LRSIQSILGHFRLSTTQIYTNVNS 303
                      H LRH+   H       +G D    L  + + LGH  + +TQ Y  +  
Sbjct: 234 CPEGELHPPRLHDLRHTATVHRVLAWYRDGKDVQRLLPQLATYLGHVDIKSTQRYLRMTP 293

Query: 304 KNGGDWMME 312
           +   +    
Sbjct: 294 ELLAEASRR 302


>gi|121583417|ref|YP_973848.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
 gi|120596671|gb|ABM40106.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
          Length = 609

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 62/345 (17%), Positives = 121/345 (35%), Gaps = 52/345 (15%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+  Q W+Q     R  S  T   Y  +  + L++L +   E     T+ Q+   E  AF
Sbjct: 271 LEAVQRWIQA----RAGSLATATLYRREAHRLLLWLQYERGENGRGATLAQMGVAECSAF 326

Query: 75  ISKRR----------------------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
           ++  +                        ++  RS ++S++ I S   +L+  +    + 
Sbjct: 327 MAFLQHIPPRWISRVRAAPGQPGWAPFRGQLSHRSCRQSITIIASLFAWLQSARYLAANP 386

Query: 113 ILNM-----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
            + +      +        +AL+E     ++  +       ++        I+  +   G
Sbjct: 387 WVLVNQATGDDPGHKMLDTKALSEAAMAEVLRFIDAQAPSPSRARM---RFIVRFVEAVG 443

Query: 168 LRISEALSLTPQN--IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC----PFDL 221
           LR +E LS    +  +  +   +++ GKG K RI  +      A+ +Y            
Sbjct: 444 LRSAELLSARLGDLRMEPEGWVMQVHGKGAKNRIAAVPGQALHALEDYLLARGLGSIQAA 503

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL----GLPLS-------TTAHTLRHSFA 270
             +  L         P+       ++R           LP +        T H LRH+F 
Sbjct: 504 APSAPLLAATQDAMAPIGYQALYEHVRGWLAKAVRASSLPANERDRLAGATTHWLRHTFG 563

Query: 271 THLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDWMMEIY 314
           T  ++    L  IQ+ +GH  +  TT IY     +   D + + +
Sbjct: 564 TRAIARQVPLDVIQAQMGHASIQTTTAIYGRAPIRRRVDELGKAF 608


>gi|295099116|emb|CBK88205.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87]
          Length = 398

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/315 (13%), Positives = 112/315 (35%), Gaps = 47/315 (14%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           + + + T +      RQ+L  +     + +  ++I  +  ++ + +  +        +++
Sbjct: 97  KNVKRNTEKG-----RQYL--MKILENDPLGARSIDTVKLSDGKEWAMRMYENGFSYKTI 149

Query: 89  KRSLSGIKSFLKYLKKRKITTESNI-LNMRNLKKSNSLPRA-LNEKQALTLVDNVLLHTS 146
                 +K+      +     ++     + ++ + NS P+  L  +Q     + +L    
Sbjct: 150 SNYKRSLKASFYMAIEDDCIRKNPFNFKLSDVLEDNSEPKVILTPEQE----EKMLAFME 205

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---------------- 190
            +  +    +  ++  L   GLRISE   LT  +I      + +                
Sbjct: 206 QDKTYSKYYDEVVI--LLETGLRISEFCGLTI-HIDMANRIINVDHQLLKDTEIGYYIET 262

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIRGKP--------LN 239
                  R +P+     +A             +        LF   +G P        + 
Sbjct: 263 PKTKKGERQLPMTERAYQAFKRVLQNRGKAEPIVINGYSNFLFLNQKGFPKVAGNYVSML 322

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IY 298
            G+ ++Y +  +  L    + T H+ RH++ T++ + G +  ++Q I+GH  ++ T   Y
Sbjct: 323 RGLVKKYNKTHKDQL---PNITPHSFRHTYCTNMANKGMNPNTLQYIMGHSNITMTLGYY 379

Query: 299 TNVNSKNGGDWMMEI 313
            +    +    +  +
Sbjct: 380 AHGTFNSAKAELERL 394


>gi|116511115|ref|YP_808331.1| integrase [Lactococcus lactis subsp. cremoris SK11]
 gi|116106769|gb|ABJ71909.1| Integrase [Lactococcus lactis subsp. cremoris SK11]
          Length = 398

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/318 (18%), Positives = 121/318 (38%), Gaps = 40/318 (12%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK------------RRT 80
           + T++S+  +  +    L  Y         I +L+ ++I+  +++             R 
Sbjct: 85  QHTVKSHSIEIMR--SNLNRYILPAFGNTKIDRLTTSQIQLQVNRWAKNAGQPLNGAMRR 142

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL----KKSNSLPRALNEKQALT 136
            K   +  K  L+      KY     + + +  L +       + +    +  N++Q  +
Sbjct: 143 NKGNAKGYKLLLNVTNRIFKYAISMGLVSSNPCLTVIVPNVKMETTEREVKHFNKEQLQS 202

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI------ 190
             D +    S    W++    AI  LL   GLRI EA +L+  +I  ++ T+ +      
Sbjct: 203 YFDYME---SLPNTWVNNELRAICRLLTASGLRIGEATALSWSDIDFEKQTISVSKTTTG 259

Query: 191 -------QGKGDKIRIVPLLPSVRKAILEYYDL---CPFDLNLNIQLPLFRGIRGKPLNP 240
                         R+V +       +  ++         L    Q  +F   +GK L+ 
Sbjct: 260 HQTIQDTPKTKHSKRVVIIDSKTISHLQRWHLYQKSYFLKLGQPNQSLIFPTNQGKILDY 319

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYT 299
              ++ ++   +   L      H  RHS A+ LL+ G   + IQ+ LGH  +  T  IY+
Sbjct: 320 QRLRKSLQATFKATELH-DIGFHGFRHSHASLLLNAGVSYKEIQTRLGHASIKMTMDIYS 378

Query: 300 NVNSKNGGDWMMEIYDQT 317
           ++  +   + + E++ + 
Sbjct: 379 HLEKEKESEAV-ELFAKY 395


>gi|29345486|ref|NP_808989.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29337378|gb|AAO75183.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|295087238|emb|CBK68761.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 410

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/295 (16%), Positives = 108/295 (36%), Gaps = 34/295 (11%)

Query: 34  LTLQSYE------CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
            T+ +Y           +F+   + Y      I  I  +  T+   ++  R T K G  +
Sbjct: 126 KTIATYRKYEVTRRHLAEFIQ--SKYNVSDFAINEITPMFITDFELYL--RTTCKCGYNT 181

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             + +   K  +   +   I       + + ++        L+E +   ++   ++    
Sbjct: 182 TAKFMQFFKRIILIARNNGILIGDPFASYK-IRLEKVDRGYLSEDEIKIILKKKMVS--- 237

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKGDKIRIVPLL 203
             +  + R+  I       GL   +  +LT  N       +   +  + K +    VPLL
Sbjct: 238 -ERLENVRDLFIFSCF--TGLAYIDVANLTQDNIRKSFDGNLWIITKRQKTNTDVNVPLL 294

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              +  + +Y      +L     LP+        ++      Y++++    G+  + T H
Sbjct: 295 DIPKMILKKY----KGNLPDGKILPV--------ISNQKLNAYLKEIADVCGIKKNLTFH 342

Query: 264 TLRHSF-ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
             RH+F  T  L+ G  + ++  +LGH  + TTQIY  + +    + M  +  + 
Sbjct: 343 LARHTFATTTTLAKGVPVETVSKMLGHTNIETTQIYARITNNKISNDMQGLDKKF 397


>gi|298252084|ref|ZP_06975887.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297546676|gb|EFH80544.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 362

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 56/333 (16%), Positives = 103/333 (30%), Gaps = 58/333 (17%)

Query: 18  RQNWLQNLEIERGLSKL--TLQS-----YECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
            Q +L+       LS    T+++     Y     +    +     + +    I QL+Y  
Sbjct: 45  VQEYLEY-----WLSAHGPTIRAISLMGYRHAVNRINKIVGNVKLKALKADKI-QLAYGT 98

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           +              R+++ + +     L      +    +    +   K        L+
Sbjct: 99  ML-------KNGFKPRTIQTTHTIFAIALNDAVDWEYLPSNPASKVTPPKAGKREYTLLD 151

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             +A  L+D             D    AI+ L  G G+R +E  +L   +I  D   L +
Sbjct: 152 MDEAKRLIDA----------AGDTPIRAIIALAVGTGMRKAEITALKWSSIDLDAKKLYV 201

Query: 191 --------------------QGKGDKIRIVPLLPSVRKAILEYYDLCPFD-----LNLNI 225
                                      R + L   V   +  +                 
Sbjct: 202 AEGAVYVKLDETPGQIVENDPKTSSGRRSLTLPDFVIDELRAHKIRQKEQRLKAGAAWVD 261

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
              +F   RG  +         +++    GLP     H LRHS A+ LL+ G   + +Q 
Sbjct: 262 HGLVFTNRRGGHIYVS-INEMFKRVLAQAGLP-DMRLHDLRHSLASILLAMGVHPKVVQE 319

Query: 286 ILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQT 317
           ILGH  ++ T  IY++V        +  +  + 
Sbjct: 320 ILGHSSITITMNIYSHVMPSMHSAAVEGLNAKF 352


>gi|227553215|ref|ZP_03983264.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
 gi|227177581|gb|EEI58553.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
          Length = 408

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 110/326 (33%), Gaps = 44/326 (13%)

Query: 36  LQSYECDTRQ-----FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR--------RTQK 82
           + +Y+ + ++     +   +  Y +  I    + +    + + FI+              
Sbjct: 79  INAYKNNVKEGSRIVYRDAIRMYIDPYIGNYQLNKYKPADHQKFINSLFTNKELGKNKNG 138

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +   ++K   + + +  K  +K      +    +              +K     ++   
Sbjct: 139 LSYNTVKIVNAALSNAFKKAQKLGYVKSNPTYLVEFPLDKVKEKTNKEKKLEFYTLEQEN 198

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-----RIQGKGDK- 196
           L       + D        +++  GLR  E ++L   N     + L     R+  K    
Sbjct: 199 LFLDTARNFDDFMWYVFFLIIFDLGLRKGEVMALRWFNFDFRDNILTFDKQRLYRKEQPG 258

Query: 197 ------------IRIVPLLPSVRKAILEYYDLCP------FDLNLNIQLPLFRGIRGK-- 236
                        R + +   VR ++LE Y +          +  + Q  LF   RGK  
Sbjct: 259 QVILDDVKTDAGKRSLKMTNRVRNSVLELYSINYDLTSNVLPMTNSNQDFLFINHRGKNV 318

Query: 237 --PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
             P+          ++ +   LP     H  RH+ A  L   G  L  I+ +LGH  + T
Sbjct: 319 GLPIRQRSVDTAWHRIIQKANLPK-IRIHDGRHTNAARLRQAGVPLEDIKDMLGHKNVKT 377

Query: 295 TQIYTNVNSKNGGDWM--MEIYDQTH 318
           T+IY +V+ +     +  +E+Y   H
Sbjct: 378 TEIYAHVSPEVKERAVNKLELYQMQH 403


>gi|120401500|ref|YP_951329.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|120404852|ref|YP_954681.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|120404859|ref|YP_954688.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|120406875|ref|YP_956704.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119954318|gb|ABM11323.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119957670|gb|ABM14675.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119957677|gb|ABM14682.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119959693|gb|ABM16698.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 393

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 62/337 (18%), Positives = 107/337 (31%), Gaps = 68/337 (20%)

Query: 23  QNLEIERGL-SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-- 79
           + +E  R L S  T++ Y     Q+  FL    +          +      AF+S +R  
Sbjct: 31  EWIEAHRHLWSPNTVRGYATSLAQWWSFLEQRGQS----DAWCDVGVPAFTAFLSWQRNG 86

Query: 80  ----------TQKIGDRSLKRSLSGIKSFLKYLKK-----------RKITTESNILNMRN 118
                      Q     +L+  L+ + SF ++ +            R          +  
Sbjct: 87  RTVEHRLAESDQAPSASTLEVRLAALISFYRWHQAVSGVVVAGRLLRGTPRRRPARGLLA 146

Query: 119 LKKSNSLPRALN-----------------EKQALTLVDNVLLHTSHETKWID-ARNSAIL 160
              + S P A +                  +Q   ++D   +  +    W    R+  + 
Sbjct: 147 HLDARSAPAASSLVRVRRDRRRDRPPLLLPEQIQAILDGCAVFDAESGLWQGNLRDRFVF 206

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQS---TLRI----------QGKGDKIRIVPLLPSVR 207
            LL   G+R+ EAL L     +  +     ++I          + K  + R V +   + 
Sbjct: 207 ALLAETGMRLGEALGLRIGEFVLGRGGTAYVQIVPRSDNPNGARVKMMRPRRVYVGADLE 266

Query: 208 KAILEYYDLCPFD-----LNLNIQLPLFRGIRGKP----LNPGVFQRYIRQLRRYLGLPL 258
           +   +Y            + L    PL   +   P    L     +  +  LRR    P 
Sbjct: 267 RLFADYLTDIACRAAESGIALTDTSPLLVNVSRPPWLAALRETTVREKVATLRRRRIGPP 326

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             T H  RH+ AT LL  G     +   LGH  + TT
Sbjct: 327 GWTPHWFRHTHATALLLAGTPDWVVSRRLGHAHVQTT 363


>gi|298253391|ref|ZP_06977183.1| phage-like integrase [Gardnerella vaginalis 5-1]
 gi|297532786|gb|EFH71672.1| phage-like integrase [Gardnerella vaginalis 5-1]
          Length = 279

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 60/274 (21%), Positives = 103/274 (37%), Gaps = 45/274 (16%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G S  TL+S      +  I L            +  +S  E+  +++    +   + + K
Sbjct: 30  GQSPKTLESRRIQLVRMAIDL-----------NVTTVSNEELVTWLA---NKNWANETRK 75

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
            + + I+ F  YL    I T+    ++ +++ S  LP    ++     ++ V  +     
Sbjct: 76  SNRAAIRGFFNYLFHTHIRTDDPAFDLPSVRPSRPLPHPCPDQYITNALEQVHNNKE--- 132

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKGDKIRIVPL-LPS 205
                    ++ L  G GLR  E   +   +I++D      L I GKG+K R +P+    
Sbjct: 133 -------RLMIILAAGYGLRRCEICRIHSNDIINDAYGGYALIIHGKGNKERSLPISTDI 185

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
               I E+  L P           + G R   L                 LP   + H+L
Sbjct: 186 AMHIIAEHGYLYPGRYPDTHVEESYIGKRLSDL-----------------LPNGWSGHSL 228

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           RH FAT       D+ ++   LGH  ++TTQ Y 
Sbjct: 229 RHRFATTAYCKTHDIFAVSRALGHESVATTQRYV 262


>gi|294339749|emb|CAZ88111.1| putative phage integrase, Bbp50 [Thiomonas sp. 3As]
          Length = 350

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/321 (16%), Positives = 113/321 (35%), Gaps = 38/321 (11%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           + + WL+   +E      TL  Y+          A + E  +  + +R L  ++++  ++
Sbjct: 53  QLETWLEAQRVE----HSTLAGYKS--------AAAFWEAAVGSKALRGLVKSDVQTALA 100

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           KR    +  +++   +S ++  L       +  E+   ++   K     P   +  +   
Sbjct: 101 KRPD--LSGKTINNYMSVLRQALDLAVADNLIQENPAGDIPRAKHQKEPPDPFSADEGAA 158

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI------ 190
           ++    L  SH  +  +     ++      GLR SE  +L  +N+     T+ +      
Sbjct: 159 II--GRLRQSHPGQVAN-----MVEFWMWTGLRTSEIFALKWKNVDLRSGTVLVSEAVVR 211

Query: 191 -----QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
                  K +  R V L    + A+               Q P +       ++   F+R
Sbjct: 212 GEHKDSTKTNVARTVLLNSMAKAALQRQRAFTQAAGAEVFQDPRYGTPW---IDERAFRR 268

Query: 246 -YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN-VNS 303
            Y     + LG+      + +RH+++T +L  G         LGH      + Y+  ++ 
Sbjct: 269 SYWTPTLKLLGV-RYRRPYNMRHTYSTAMLMAGMTPAFCARQLGHSVEMFLRTYSKWIDG 327

Query: 304 KNGGDWMMEIYDQTHPSITQK 324
           +     M  +     P   +K
Sbjct: 328 QRDDSEMARLEALIAPPAARK 348


>gi|293568955|ref|ZP_06680268.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1071]
 gi|291588388|gb|EFF20223.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1071]
          Length = 382

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 111/290 (38%), Gaps = 36/290 (12%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR--------RTQKIGDRSL 88
           ++Y    +     LA++   K+ ++ IR +   E + F+ +         + + + +  +
Sbjct: 87  KTYVKTDKTLKRALAYFG--KMQMEKIRPIHIQEFQQFLVQECSVTNKEGKIRPLSNNYI 144

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           K+  + ++   K     ++  E+ +  +  ++   S+       +   +      + S+ 
Sbjct: 145 KQIFNKLRIIFKRAVVLEVIEENPVDTIGKIRTQRSVVAFWTVDEFKKVY-----NCSYR 199

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST------LRIQGKGDKI----- 197
             + +     ++  L+  GLR  E  +L   +I   + T      L I+ + D       
Sbjct: 200 CDFQEEFYKRMMRFLFVTGLRSEELFALQWPDIDFRKGTCSVSKSLYIRTRTDYDFSDTK 259

Query: 198 -----RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
                R + L     + + E+ +      +    +  F G+   P +P  F   +++L  
Sbjct: 260 NTSSIRTITLDKQTMEDLREWKESQKTIGDDLGFIFTFDGL---PPSPKTFLGRVKKLAE 316

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
             G+      H LRHS    L+ +  ++ ++   LGH  + TT   Y ++
Sbjct: 317 VAGV-KPIHLHGLRHSHVAFLIEHNNNIYAVSKRLGHSSVKTTLDKYGHL 365


>gi|168186645|ref|ZP_02621280.1| phage integrase [Clostridium botulinum C str. Eklund]
 gi|169295376|gb|EDS77509.1| phage integrase [Clostridium botulinum C str. Eklund]
          Length = 393

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 60/334 (17%), Positives = 119/334 (35%), Gaps = 53/334 (15%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L+   +E  +   T   Y   T  +   +  +   +     ++ LS  E++ F++ ++
Sbjct: 66  DYLKY-WLEENV--KTNLKYRTYT-CYKRVIENHIIPQFGNYKLKNLSALELQEFLNSKK 121

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLK----KSNSLPRALNEKQA 134
                  +L      +   LK          E+ +L +   K    +S+     L   + 
Sbjct: 122 KNGYTKNTLGNFYGVLSGSLKMAVHPYGFIKENPMLYVSMPKFNTKQSDEKISVLTIDEV 181

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-- 192
             ++D     +S             + + +  GLR SE  SLT  NI  +  TL ++   
Sbjct: 182 NQILDRFPFGSSFYIN---------VQIAFHTGLRASEVCSLTWDNIAFENKTLTVEKNL 232

Query: 193 -KGDKIRIVPLLP-----------SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP--- 237
            K                           IL+ ++L   +  L       +         
Sbjct: 233 LKQGHEWCFDTPKTKSSNRTIRIGDTLINILKKHNLWQKENQLRYGKYYAKNTYDFHGKT 292

Query: 238 --------------LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                         ++    +   R +   LG+  +   H LRH+ AT LL  G +++ I
Sbjct: 293 YTTDLISTKENGELVSSDSLKYLSRVVNYDLGIKFN--FHALRHTHATMLLEGGANIKDI 350

Query: 284 QSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQ 316
           Q  LGH +L+TT   Y++V  K   + + +I+++
Sbjct: 351 QKRLGHSKLATTMDTYSHVTEKIQNNTI-DIFEK 383


>gi|89147369|gb|ABD62545.1| integrase [uncultured bacterium]
          Length = 163

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 47/93 (50%)

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           A  ++     F        P     R   L+    Q+ ++   R  G+    + HT RHS
Sbjct: 70  APRQWGWQYVFPAPSLSIDPRTGNERRHHLSESAVQKSVKSAIRNAGIAKHASCHTFRHS 129

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           FATHLL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 130 FATHLLESGYDIRTVQELLGHKDVRTTMIYTHV 162


>gi|29374942|ref|NP_814095.1| phage integrase [Enterococcus faecalis V583]
 gi|29342400|gb|AAO80166.1| phage integrase [Enterococcus faecalis V583]
          Length = 404

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/319 (16%), Positives = 108/319 (33%), Gaps = 25/319 (7%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +++KE  +++Q+ + +      TL  Y       L       ++K     I+ L++ +I+
Sbjct: 86  DMIKEWFDYIQDPKSKERKKGSTLSGYSYGIDSLLNEFLVIEKDKR----IQDLTFDDIQ 141

Query: 73  AFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           AF  +     +     +KR  + I+       K++     + +N+  +         L  
Sbjct: 142 AFYDRMIFDFEYQKSYIKRFRAIIRGAFTLAYKKRYIKNLDAINLSKIVTPAKTVDDLIN 201

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSA-ILYLLYGCGLRISEALSLTPQNIMDD------ 184
           +Q    ++        +           IL L +  G+R  E ++L  +N  D       
Sbjct: 202 EQVPRYLEKAEAEQIFQVLNGYNPLYTQILELQFHTGMRFGELIALESKNFHDGFLLDIH 261

Query: 185 -----------QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
                      +            R + L  +  + I +      F  N N    LF   
Sbjct: 262 GTYDHATRSHTRGQKVPPKTRKSFRTIELGDAAVQIIKDRMYHNHFIKNKNSDF-LFVTS 320

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
             +P + G    +I   +         + H  RH+  + L      ++ I   +GH    
Sbjct: 321 NDRPYDLGTINSFIASHQIEFNTSTKVSTHVFRHTHISMLAEKSIPIQVIMDRVGHEDRE 380

Query: 294 TTQ-IYTNVNSKNGGDWMM 311
           TT+ IY +V  K   D + 
Sbjct: 381 TTEKIYMHVTKKQKTDLVK 399


>gi|26251199|ref|NP_757239.1| tyrosine recombinase [Escherichia coli CFT073]
 gi|91213957|ref|YP_543943.1| tyrosine recombinase [Escherichia coli UTI89]
 gi|117626620|ref|YP_859943.1| tyrosine recombinase [Escherichia coli APEC O1]
 gi|170681303|ref|YP_001746749.1| tyrosine recombinase [Escherichia coli SMS-3-5]
 gi|191170695|ref|ZP_03032247.1| type 1 fimbriae regulatory protein FimB [Escherichia coli F11]
 gi|215489636|ref|YP_002332067.1| tyrosine recombinase [Escherichia coli O127:H6 str. E2348/69]
 gi|218692717|ref|YP_002400929.1| tyrosine recombinase [Escherichia coli ED1a]
 gi|300977980|ref|ZP_07174111.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 45-1]
 gi|300992557|ref|ZP_07179924.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 200-1]
 gi|306815504|ref|ZP_07449653.1| tyrosine recombinase [Escherichia coli NC101]
 gi|331650433|ref|ZP_08351505.1| type 1 fimbriae regulatory protein FimB [Escherichia coli M605]
 gi|26111631|gb|AAN83813.1|AE016771_324 Type 1 fimbriae Regulatory protein fimB [Escherichia coli CFT073]
 gi|732681|emb|CAA85725.1| FimB protein [Escherichia coli]
 gi|91075531|gb|ABE10412.1| type 1 fimbriae regulatory protein FimB [Escherichia coli UTI89]
 gi|115515744|gb|ABJ03819.1| type 1 fimbriae regulatory protein FimB [Escherichia coli APEC O1]
 gi|170519021|gb|ACB17199.1| type 1 fimbriae regulatory protein FimB [Escherichia coli SMS-3-5]
 gi|190908919|gb|EDV68506.1| type 1 fimbriae regulatory protein FimB [Escherichia coli F11]
 gi|215267708|emb|CAS12167.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218430281|emb|CAR11150.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli ED1a]
 gi|222036048|emb|CAP78793.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli LF82]
 gi|294490775|gb|ADE89531.1| type 1 fimbriae regulatory protein FimB [Escherichia coli IHE3034]
 gi|300305298|gb|EFJ59818.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 200-1]
 gi|300409774|gb|EFJ93312.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 45-1]
 gi|305851166|gb|EFM51621.1| tyrosine recombinase [Escherichia coli NC101]
 gi|307629470|gb|ADN73774.1| tyrosine recombinase [Escherichia coli UM146]
 gi|312948931|gb|ADR29758.1| tyrosine recombinase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315293235|gb|EFU52587.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 153-1]
 gi|315298919|gb|EFU58173.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 16-3]
 gi|320193596|gb|EFW68231.1| type 1 fimbriae regulatory protein FimB [Escherichia coli
           WV_060327]
 gi|323189839|gb|EFZ75117.1| phage integrase family protein [Escherichia coli RN587/1]
 gi|324005153|gb|EGB74372.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 57-2]
 gi|324012902|gb|EGB82121.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 60-1]
 gi|330909748|gb|EGH38258.1| type 1 fimbriae regulatory protein FimB [Escherichia coli AA86]
 gi|331040827|gb|EGI12985.1| type 1 fimbriae regulatory protein FimB [Escherichia coli M605]
          Length = 200

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 66/181 (36%), Gaps = 8/181 (4%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K  N     L   +  +L+       +  T    ARN  +  L +  G R SE   L   
Sbjct: 4   KADNKKRNFLTHSEIESLL------KAANTGPHAARNYCLTLLCFIHGFRASEICRLRIS 57

Query: 180 NIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           +I      + I   K       PLL    +A+  +  +     +   +  +F   +G PL
Sbjct: 58  DIDLKAKCIYIHRLKKGFSTTHPLLNKEIQALKNWLSIRTSYPHAESE-WVFLSRKGNPL 116

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +   F   I       GL L    H LRHS    L + G D R IQ  LGH  +  T  Y
Sbjct: 117 SRQQFYHIISTSGGNAGLSLEIHPHMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWY 176

Query: 299 T 299
           T
Sbjct: 177 T 177


>gi|329963222|ref|ZP_08300959.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328528918|gb|EGF55858.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 308

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/270 (18%), Positives = 104/270 (38%), Gaps = 28/270 (10%)

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
             LS   ++ F+ ++    +  +S+K  L  +K  +K+  K +    S   +++      
Sbjct: 45  DALSEKAVQDFVLQKLNGGMSVKSVKDILIVLKMVMKFGVKHEWMNYSEW-DIKYPTTEK 103

Query: 124 -SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
                 L       ++D +  + +             +Y+    GLRI E  +L   +I 
Sbjct: 104 NKELEVLTVAHHKKILDYIRQNFTFRNLG--------IYISLSTGLRIGEVCALRWSDID 155

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAIL----------------EYYDLCPFDLNLNIQ 226
            D  T+ +Q   ++I I+       + ++                E   L      +   
Sbjct: 156 VDSGTISVQRTIERIYIIEGEMKHTELVINTPKTKNSCREIPMSKELLALVKPLKKVVNA 215

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
                     P  P  ++ Y ++L  +LG+P     H LRHSFAT  + +  D +++  +
Sbjct: 216 DYYILTNEPLPTEPRTYRNYYKRLMEHLGIPK-LKFHGLRHSFATRCIESNCDYKTVSVL 274

Query: 287 LGHFRLSTT-QIYTNVNSKNGGDWMMEIYD 315
           LGH  +STT  +Y + N +     + +++ 
Sbjct: 275 LGHSNISTTLNLYVHPNMEQKKRCIAKMFK 304


>gi|227546691|ref|ZP_03976740.1| phage family integrase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227213008|gb|EEI80887.1| phage family integrase [Bifidobacterium longum subsp. infantis ATCC
           55813]
          Length = 318

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 83/213 (38%), Gaps = 22/213 (10%)

Query: 103 KKRKITTESNILN--MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
               +          ++  +      + LN+ +   ++ ++ L       W       ++
Sbjct: 100 VDEGLIQRDPTRKAIIKGKQPRQKKTKYLNQFELHAVLADLKLDPIPNWDW-------LI 152

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY-- 213
            L+   GLR SEAL LTP +      TL +    +       +P     SVRK  L++  
Sbjct: 153 LLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWNYKNGGGFVPTKNASSVRKVQLDWQL 212

Query: 214 -YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
              L     NL    P+F   +            + +  +  G+P+  + H LRH+ A+ 
Sbjct: 213 IMQLSVLLKNLPDDKPIFVNGKVYNSTANGI---LARHCKQAGVPV-ISIHGLRHTHASL 268

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           LL  G  + S+   LGH  ++TTQ  Y +V  +
Sbjct: 269 LLFAGVSIASVSKRLGHASMNTTQETYLHVIRE 301


>gi|225872872|ref|YP_002754329.1| phage integrase family protein [Acidobacterium capsulatum ATCC
           51196]
 gi|225794498|gb|ACO34588.1| phage integrase family protein [Acidobacterium capsulatum ATCC
           51196]
          Length = 414

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 62/296 (20%), Positives = 114/296 (38%), Gaps = 24/296 (8%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +    +L +    R L++ TL   E   R+   FLA+   E  T+  +R+L    +++F 
Sbjct: 78  QAVDEYLADARA-RNLAESTLSKLETIFRK--QFLAWTKSEGYTL--LRELDLRAVQSFR 132

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +  R   +  +  +  L+G   F  +  +    T+S  LN++ +            ++  
Sbjct: 133 ATWRDGGLAKKKKQERLTG---FFWFCIRAGWITQSPTLNLKRITVQQMPTDYFPREEYN 189

Query: 136 TLVDNVL-----LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            ++D        L   ++ +    R  A++ LL   GLRI +A++L  + +  +   L  
Sbjct: 190 EIIDGTYRLDDGLERGYDVEKRGQRIRALVQLLRWSGLRIRDAVTLERERLQSNDDLLLY 249

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           Q K      VPL   V + +       P     N +   + G          +QR  R+L
Sbjct: 250 QAKTGVPVYVPLPHKVAEDLR----NVPPGPKPNPRYFFWSGNGDPKSAVADWQRAFRRL 305

Query: 251 RRYLGLPL------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYT 299
               GL            H  R +FA  +L  G  +  +  +LGH  +  T+  Y 
Sbjct: 306 FEVAGLEKPDGGRKRCFPHMFRDTFAVEMLLAGVPIDQVSILLGHKSVKITEKHYA 361


>gi|312888616|ref|ZP_07748185.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311298930|gb|EFQ76030.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 435

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 63/306 (20%), Positives = 113/306 (36%), Gaps = 26/306 (8%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRS 87
           +  +  TL+ YE        F+ +  +  +    IR+L +  I  +    +T +     +
Sbjct: 125 KDYADGTLERYETSLEHTKAFIQWQYQ--VNDLYIRKLDHFFIEQYAFWLKTVRNCNHNT 182

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             + LS  K  +    K K        N +  K+   +   L+E +   ++     +   
Sbjct: 183 TMKYLSNFKKIVLICVKNKWLQGDPFTNFKMSKREV-MREPLSEWELQAMI-----NKDF 236

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----MDDQSTLRIQGKGDKIRIVPLL 203
           E   ++     I       GL  ++   L    I      +Q     + K D    +PLL
Sbjct: 237 ENDRLNNV-RDIFVFSCYTGLAYADVKKLKRSEINMGVDGEQWIFTPRQKTDTPCPIPLL 295

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           P   + +LE Y   P  +N +  LP+        L       Y++++    G+    T H
Sbjct: 296 PVALQ-LLEKYAHYPKCINQDRVLPV--------LTNQKMNAYLKEIADLCGINKVLTFH 346

Query: 264 TLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
             RH+FAT   LSNG  + ++  +LGH  L  T  Y        G  M  +  +   ++ 
Sbjct: 347 LARHTFATTICLSNGVPMETVSKMLGHTNLKQTLHYAKTLHSKIGADMASLRQKL--AVN 404

Query: 323 QKDKKN 328
            K +K 
Sbjct: 405 PKPEKE 410


>gi|300928760|ref|ZP_07144275.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 187-1]
 gi|300463240|gb|EFK26733.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 187-1]
          Length = 200

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 66/181 (36%), Gaps = 8/181 (4%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K  N     L   +  +L+       +  T    +RN  +  L +  G R SE   L   
Sbjct: 4   KADNKKRNFLTHSEIESLL------KAANTGPHASRNYCLTLLCFIHGFRASEICRLRIS 57

Query: 180 NIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           +I      + I   K       PLL    +A+  +  +     +   +  +F   +G PL
Sbjct: 58  DIDLKAKCIYIHRLKKGFSTTHPLLNKEVQALKNWLSIRTSYPHAESE-WVFLSRKGNPL 116

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +   F   I       GL L    H LRHS    L + G D R IQ  LGH  +  T  Y
Sbjct: 117 SRQQFYHIISTSGGNAGLSLEIHPHMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWY 176

Query: 299 T 299
           T
Sbjct: 177 T 177


>gi|262382525|ref|ZP_06075662.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262295403|gb|EEY83334.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 310

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/296 (17%), Positives = 104/296 (35%), Gaps = 40/296 (13%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  L  ++  S  T +SY+   R F  F      E+I       ++   +  + S    
Sbjct: 13  YITCLREKKRYS--TAKSYQDALRSFKCFCGR---EEI---PYAYINRDTLLRYQSWLLA 64

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITT------ESNILNMRNLKKSNSLPRALNEKQA 134
           +     ++   +  I+       +           ++    + + K+  +LP      ++
Sbjct: 65  KGCARNTVSTYMRRIRHIYNLAVEVGEAAYIPHLFKNVFTGVES-KRKKALP-----SES 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           L L+    +    + +       A   +   CG+   +   L  ++I +   +   + K 
Sbjct: 119 LRLLMTSPVTDPQQKRTQS----AFCLMFLFCGMAFVDLAHLRKEDIKEGILSYY-RQKS 173

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP----------GVFQ 244
             +  V +    +  + E       D        LF  + G               G F 
Sbjct: 174 GSLIQVEIPAEAQGLLNELAADTTED-----SPYLFPFLEGMKTGEDAYKEYNTVLGGFN 228

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           R ++ L   +G+    T++T+RHSFAT L      +  I  +LGH  + TTQIY  
Sbjct: 229 RRLKILSESIGIHTRVTSYTIRHSFATTLKEQNVPIEMISELLGHKSIKTTQIYLK 284


>gi|167623237|ref|YP_001673531.1| integrase family protein [Shewanella halifaxensis HAW-EB4]
 gi|167353259|gb|ABZ75872.1| integrase family protein [Shewanella halifaxensis HAW-EB4]
          Length = 341

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/238 (20%), Positives = 93/238 (39%), Gaps = 29/238 (12%)

Query: 76  SKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           ++ +  K+   ++    + + + F +  K  +    + +  +   K  ++    L  ++ 
Sbjct: 124 AQGKMNKVKPNTINHEHAYLNAVFSELKKLGEWKLPNPLDGISQFKIEDTELAFLYPEEI 183

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             ++                  + I+ +    G R SEA  L    I  ++ T  ++ KG
Sbjct: 184 PIVLTECANAE-------YEHLTTIVLICLATGCRWSEAEGLRGSQIAHNRITF-VKTKG 235

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K R VP+   +   I               + PLFR  R        F+R I+  R  L
Sbjct: 236 KKNRTVPIAKELADKI------------PRARGPLFRPCRK------SFERAIK--RTKL 275

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             P     H LRH+FA+H + NGG++  ++ ILGH  +  T  Y +    +  D + +
Sbjct: 276 NFPDRQMTHILRHTFASHFMMNGGNILVLKQILGHSDIKDTMRYAHFAPDHLDDAITK 333


>gi|29375109|ref|NP_814262.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|227553843|ref|ZP_03983892.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
 gi|229547634|ref|ZP_04436359.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX1322]
 gi|255973543|ref|ZP_05424129.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256852450|ref|ZP_05557826.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|256957621|ref|ZP_05561792.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256959670|ref|ZP_05563841.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256963244|ref|ZP_05567415.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|257080140|ref|ZP_05574501.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|257085830|ref|ZP_05580191.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|293384862|ref|ZP_06630705.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis R712]
 gi|293389152|ref|ZP_06633619.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis S613]
 gi|300862196|ref|ZP_07108276.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|307268561|ref|ZP_07549933.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|307272288|ref|ZP_07553548.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0855]
 gi|307282786|ref|ZP_07562986.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|312908160|ref|ZP_07767138.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|312952113|ref|ZP_07770994.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0102]
 gi|312979096|ref|ZP_07790811.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|21693260|gb|AAM75207.1|AF454824_1 putative integrase [Enterococcus faecalis]
 gi|29342568|gb|AAO80333.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
 gi|227177096|gb|EEI58068.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
 gi|229307126|gb|EEN73113.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX1322]
 gi|255966415|gb|EET97037.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256712304|gb|EEU27336.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|256948117|gb|EEU64749.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256950166|gb|EEU66798.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256953740|gb|EEU70372.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|256988170|gb|EEU75472.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|256993860|gb|EEU81162.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|291077866|gb|EFE15230.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis R712]
 gi|291081523|gb|EFE18486.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis S613]
 gi|300848721|gb|EFK76478.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|306503642|gb|EFM72873.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|306511177|gb|EFM80187.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0855]
 gi|306515050|gb|EFM83593.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|310625868|gb|EFQ09151.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|310629895|gb|EFQ13178.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0102]
 gi|311288130|gb|EFQ66686.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|315026260|gb|EFT38192.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2137]
 gi|315028513|gb|EFT40445.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4000]
 gi|315167736|gb|EFU11753.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1341]
 gi|315574914|gb|EFU87105.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309B]
 gi|315582361|gb|EFU94552.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309A]
 gi|329575038|gb|EGG56590.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1467]
          Length = 389

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 61/339 (17%), Positives = 124/339 (36%), Gaps = 53/339 (15%)

Query: 7   PEIVSFELLKERQNWLQNLEI-ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           P+++ ++ L      L  LE+ ++ ++  T   Y+           F+  +KI +  ++ 
Sbjct: 69  PDLLFYDYL------LNYLEVSKKQVAFNTYVGYKHYVHN--RIYKFFYPKKIKLNRLKP 120

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
                ++ F            ++    + I+  L+     ++ + +    +R  KK   +
Sbjct: 121 Y---HLQDFYQYMLNDDCTANTVIHYHAFIRKALQEAVITELISTNVADKVRKPKKKQFV 177

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
            +  N+ + L L+D             + +   ++ L    GLR SE L L    I    
Sbjct: 178 SQVYNQHEILKLLDI----------LSEEKLYLVVLLTAFYGLRRSEVLGLKWSAIDFLN 227

Query: 186 STLRIQG-------------KGDKIRIVPLLPSV-------------RKAILEYYDLCPF 219
             + I               K D+ +      ++              K   +   L   
Sbjct: 228 KKIMINHVIIENPENMSQLIKKDQTKNSSSYRTLPLVETIERALVNQAKWQQDNRILLGE 287

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
           D  L     +F    G+ + P      + +L +  GL      H LRHS A+ +L +G +
Sbjct: 288 DYILKDSEYVFTMEDGRLMKPQYVTHRLSKLIKKNGL-KKIRFHDLRHSNASIMLDSGQN 346

Query: 280 LRSIQSILGHFRLSTTQ-IYTNVNS---KNGGDWMMEIY 314
           ++SIQ  LGH   STT  +YT++ +   +   + +   +
Sbjct: 347 MKSIQEWLGHASYSTTANLYTHLTAGVKERAAEALENAF 385


>gi|313897143|ref|ZP_07830688.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312958071|gb|EFR39694.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 284

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 64/316 (20%), Positives = 122/316 (38%), Gaps = 42/316 (13%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M    +   +   ++KER+        E+  SK T++ Y         FL          
Sbjct: 1   MTKEGMRRSIDGFIIKERE-------AEK--SKNTVRHYAHVLDLLYDFLPE-------- 43

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
               +L+ T I  F            +++  ++ +  +LKY K ++ T  +  + ++  K
Sbjct: 44  ---GELNKTGIIEFKEHLLESGFEPSTVQNYITIVNKWLKYAKMKRFTVTN--IKVQG-K 97

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL-YLLYGCGLRISEALSLTPQ 179
            S      L  +  + L+         + K +  +   ++  ++   G+R+SE    T +
Sbjct: 98  ASLEEEELLTPEDFMRLL--------RQAKRMGRKQYCMIMEIMGYTGIRLSELQYFTVE 149

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL- 238
           NI   +  +  +GK   IR + +  S++K I +Y +    +        +F G +   + 
Sbjct: 150 NIRKPKLIVHNKGK---IRTIIMPTSLKKKIKKYIEEQGIE-----SGYIFPGKKEGAML 201

Query: 239 NPGVFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +P    + IR++     +       H  RH FA   +  GG    +  ILGH +L TT I
Sbjct: 202 HPTTVYKNIRKIAATAKIKKTKAHPHAFRHLFAVRYIEEGGQPSDLADILGHSQLETTAI 261

Query: 298 YTNVNSKNGGDWMMEI 313
           YT    K     +  I
Sbjct: 262 YTRTTDKMKKIQVERI 277


>gi|295102937|emb|CBL00482.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 391

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 63/268 (23%), Positives = 102/268 (38%), Gaps = 40/268 (14%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +  L  T+++ F +K+  + +   S+    + I   LKY  K  +   +    +   KK+
Sbjct: 114 LVDLKATDLQDFYTKQLER-VKANSVIHYHANIHKALKYAVKIDLIPTNPADKVERPKKN 172

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
                  + ++   L +      +  TK         + L    GLR SE L L    I 
Sbjct: 173 AFKGSYYSAEEIHALTE-----VAEGTKLEIP-----VLLASFYGLRRSEVLGLKWDAID 222

Query: 183 DDQSTLRIQG--------------------KGDKIRIVPLLPSVRKAILE-------YYD 215
            +++TL I+                         +R +PL+P +R  +L        Y  
Sbjct: 223 FEENTLEIKHIVTQASIDGKKVLVQADRAKTKSSLRTLPLVPPIRDRLLMLKGQQETYRR 282

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
           LC    N +    L     G  + P        +L    GL      H LRHS A+ LL+
Sbjct: 283 LCGKSYNRDYLGYLCVDEIGNIIRPNYVSEQFPKLLEKNGL-RPIRFHDLRHSCASLLLA 341

Query: 276 NGGDLRSIQSILGHFRLSTTQ-IYTNVN 302
           NG  ++ IQ  LGH   STT  IY +++
Sbjct: 342 NGVPMKQIQEWLGHSDFSTTANIYAHLD 369


>gi|228915207|ref|ZP_04078802.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228844438|gb|EEM89494.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 369

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/312 (18%), Positives = 109/312 (34%), Gaps = 43/312 (13%)

Query: 32  SKLTLQSYECDTRQ-------------FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           SK+TL+ Y     +             +   +  +    I + T+ +L+   I+      
Sbjct: 61  SKVTLKEYLNHWLEIKSMSIESSTFVVYRACINQHVIPSIGMITLHKLNVMHIQKCYKTA 120

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + I + S+      +KS L    K+ I T +        KK  +  +   E++     
Sbjct: 121 INKGIANNSILLMHRILKSALNLAVKQNIITRNPSAFAEIPKKERTSIQTWTEEEVKKF- 179

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI- 197
              LLH+      I         L    G+R+ E L L  Q++  ++ T+ I        
Sbjct: 180 ---LLHSQESRYHIGY------LLAITTGMRMGEVLGLRWQDVDFEKHTVTINQTSGHDN 230

Query: 198 ------------RIVPLLPSVRKAILEYYDLCPFDL-----NLNIQLPLFRGIRGKPLNP 240
                       R +P+     +++  +  L   +          Q  +     GK +  
Sbjct: 231 KIKKTAKTNSSKRTIPVPKETIESLKRHKILINKEKLRFGSAYQDQDLINCNEFGKIIKK 290

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYT 299
             F++   +     G+      H LRH+ AT LL  G + + I   LGH  +S T  +Y+
Sbjct: 291 AHFRKCFIRETHKAGI-KEIKFHDLRHTHATILLKQGVNPKIISERLGHTDISMTLSVYS 349

Query: 300 NVNSKNGGDWMM 311
           +V      + + 
Sbjct: 350 HVLPNMQEEAVK 361


>gi|295104994|emb|CBL02538.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 385

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/300 (17%), Positives = 110/300 (36%), Gaps = 36/300 (12%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102
            + +        +  I    I  +  ++ +  I       +   ++K   + IK+  K  
Sbjct: 90  LKTYYTTTNKLKDTSIGNTKIIDVKISDAKQLIIDLSQNGLKYSTIKTIKTLIKAAFKMA 149

Query: 103 KKRKITTESNI--LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
           ++  +  ++         +K       AL E+Q   L++ VL        + D      +
Sbjct: 150 QEDDLILKNPFDFQLNEVIKNDTKKRVALTEQQYSDLLEFVLCDRVFRKYYDD------I 203

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------------GDKIRIVPLLP 204
             LY  G+R+SE   LT  +I   +  + I  +                    R +PL  
Sbjct: 204 VFLYETGIRVSEFCGLTLSDIDFVKHEVVIDKQLIKTSKGELYITDPKSKAGFRTIPLSA 263

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGK--PLNPGVFQRYIRQLRR-------YL 254
               AI    +  P    + +     F  I     P      +  +R++ +         
Sbjct: 264 EAYHAIKAIINRRPQTNEMMVDGYCGFISIHSNGTPKTAWNIEYELREIAKAYNSLYPEC 323

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
            LP + T H LRH+F T  +S+G +++++Q ++GH  +  T  +YT++++        ++
Sbjct: 324 QLP-NLTPHVLRHTFCTRKVSSGMNIKAVQYLMGHSSVQITLDVYTSIDADMIKTEFAKV 382


>gi|89147398|gb|ABD62559.1| integrase [uncultured bacterium]
          Length = 163

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/111 (33%), Positives = 52/111 (46%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           QG G       L      A   +     F        P  R +R   L+  V Q+ +   
Sbjct: 52  QGFGQVYLPFALERKYPNASRHWGWQYVFPAPKRSVDPRTRKVRRHHLSENVIQKAVSAA 111

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            +  G+    + HT RHSFATHLL  G D+R++Q +LGH  ++TT IYT+V
Sbjct: 112 IQRSGIAKPGSCHTFRHSFATHLLEAGYDIRTVQELLGHKDVTTTMIYTHV 162


>gi|86141544|ref|ZP_01060090.1| mobilizable transposon, int protein [Leeuwenhoekiella blandensis
           MED217]
 gi|85832103|gb|EAQ50558.1| mobilizable transposon, int protein [Leeuwenhoekiella blandensis
           MED217]
          Length = 398

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/297 (17%), Positives = 103/297 (34%), Gaps = 32/297 (10%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++   L+ ER  SK    +Y+          ++   +  T + I +      + +++K+ 
Sbjct: 118 SYYDKLKEERYESKG---NYDNWDAAQNHIESYCKTKNTTFEDIDENFVVGFKKYLNKKA 174

Query: 80  TQK----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
             K    +   S     +  K+ L+   +   T  +    ++      +    L  ++  
Sbjct: 175 KTKSGTLLSQNSKYTYFNKFKAALRQAFEDGYTNRNYATAVKGFAMGETTREYLTYEELQ 234

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ---NIMDDQSTLRIQG 192
            L          E K    +N+ +   L   GLR S+   LT     +  +    +  Q 
Sbjct: 235 NL-------AKAECKHQMLKNAFLFSCL--TGLRWSDVNKLTWSEVRDEEEGSRLVFKQK 285

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K        L    R  + +                +F+G++        F   I +   
Sbjct: 286 KTAAQEYQYLSDQARSILGD---------RKQENARVFQGLKYG----AHFNAEILRWCM 332

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             G+    T H+ RH+ A  LL +G D+ ++  ILGH  + TTQIY  +      + 
Sbjct: 333 RAGITKHITFHSARHTHAVLLLEHGADIYTVSKILGHKEIRTTQIYAKIVDTKKKEA 389


>gi|46580602|ref|YP_011410.1| phage integrase family site specific recombinase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46450021|gb|AAS96670.1| site-specific recombinase, phage integrase family [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 309

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 106/281 (37%), Gaps = 22/281 (7%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
            SY+ D   +L     + E  I  + + ++   +I   +  RR   +  ++   ++  +K
Sbjct: 43  SSYKTDRSLYLK----HIEPVIGSRRMDEVKTVDINELL--RRMGDLSPQTRVHAVGLVK 96

Query: 97  SFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
              + +    +    +    +   +  N+  R L+ K+A  L++ +   +          
Sbjct: 97  RLYRRMAGWGVYHGPTPTDGVVVKRVDNARMRFLSPKEARWLLEELDCRSPQ------FA 150

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
           +   + L    GLR+ E  SL  Q++  D   + +       R+  +   + + +  Y  
Sbjct: 151 DVCRVSLF--AGLRLREIFSLKVQHVNIDARVIAVMDAKSGSRMASMTEDLARVLARYVV 208

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL---STTAHTLRHSFATH 272
               +  +  +        G       F R +R L    G+         HTLRH+FA+ 
Sbjct: 209 GRRPEEFVFTKA----SGEGMRTINQTFVRVVRDLELNDGVDDARHKVVFHTLRHTFASW 264

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           L+  G  L ++  ++GH  +  T+ Y  +      + + ++
Sbjct: 265 LVQRGVPLYTVADLMGHSVVEMTRRYAKLAPDTRREAVNQL 305


>gi|237718481|ref|ZP_04548962.1| site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229452188|gb|EEO57979.1| site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 406

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 105/283 (37%), Gaps = 21/283 (7%)

Query: 33  KLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           K T+  YE   R    FL   Y    I +  I     +    FI   +     + ++K  
Sbjct: 133 KATVLRYERTVRYLEEFLKKEYQLNDIPLYNINHEFISNFEFFIKTEKNC-AQNATVK-Y 190

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L  +K  +      K  T++    +R  K++ S    L+E++   +++        E   
Sbjct: 191 LKNLKKIIILALTNKWMTDNPFSGIR-FKQTQSNREFLSEEELHIIMEKKFKIPRLEIV- 248

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRK 208
                  I       GL  ++   L P++I    + ++ +R   +         L  +  
Sbjct: 249 -----RDIFVFCCLSGLAFTDIKHLRPEHITKGPNGENWIRKPREKTNNMCHIPLLDIPA 303

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            I+E Y   P  +  N+ LP+            +   Y++++    G+    T H  RH+
Sbjct: 304 LIVEKYKNNPICVQKNMVLPVPCN--------QLMNSYLKEIADMCGITKKLTTHVGRHT 355

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           FA   L+N   + +I  +LGH  + TT+IY  V        M 
Sbjct: 356 FACIALANKVSMETIARMLGHSDIRTTKIYAKVLDTTVSKEME 398


>gi|188526782|gb|ACD62272.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 50/94 (53%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 65  RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 124

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 125 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|33867241|ref|NP_898799.1| putative transposase [Rhodococcus erythropolis]
 gi|33669075|gb|AAP74069.1| putative transposase [Rhodococcus erythropolis]
          Length = 521

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 63/324 (19%), Positives = 116/324 (35%), Gaps = 34/324 (10%)

Query: 18  RQNWLQNLEIERG-LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           R  ++  L  +R   +  T+ S       F  +LA    + +++  + +     I  FI+
Sbjct: 98  RPAFVAYLHRKRATCTPKTVSSLATRLAHFGRYLAAVDPDIVSLAALDR--RRHIEPFIT 155

Query: 77  KRRT-------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESN---ILNMRNLKKSNSLP 126
              T       + I      R +  + +FL  + +           I      +    LP
Sbjct: 156 SLTTTVNSVTGEPIAVADRIRRVHAVGNFLAEITEWGWDDAPPRKLIFRADLPRAQRVLP 215

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--- 183
           R L         D  L      + +  A ++ ++     CGLRI E L L    I +   
Sbjct: 216 RYLPVD-----ADRKLTAALSNSTYRLAADALLVQ--RACGLRIGELLDLELDCIHEIPG 268

Query: 184 DQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLC------PFDLNLNIQLPLFRGIRGK 236
             S L++  GK D  R++P+   V   +                        LF    GK
Sbjct: 269 QGSWLKVPLGKLDSERMIPVDEEVLTLVDRITATRSPGRPLRHPRTGAPADFLF-THHGK 327

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L+    ++ + +     GL    T H LRH++AT L++ G  L+++ ++LGH     + 
Sbjct: 328 RLSQSAVRQELNRAAAEAGLG-HITPHQLRHTYATALINAGVSLQALMALLGHVSTQMSL 386

Query: 297 IYTNVNSKNGGDWMMEIYD--QTH 318
            Y ++             +  ++H
Sbjct: 387 RYAHLFDATVRSEYERALNLAKSH 410


>gi|288801867|ref|ZP_06407309.1| integrase [Prevotella melaninogenica D18]
 gi|288335909|gb|EFC74342.1| integrase [Prevotella melaninogenica D18]
          Length = 409

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 102/277 (36%), Gaps = 19/277 (6%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF-ISKRRTQKIGDRSLKRSLSG 94
           +  Y         F+      K+T     QL+   I  F           + +   + + 
Sbjct: 134 IHGYHSTRIHLQKFIQRKY--KVTDLAFSQLTENFIYEFGQYFLGECGFQESTFYNAATH 191

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +K+  +   +  +         +  K    LP+AL+++     +D +      + +    
Sbjct: 192 LKTVCRLAYREGLADVLLFDKAKISKGDKRLPKALDKEA----LDKLKALNFEDLEEEME 247

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
               I       G    + + L   +++ DD+ +L ++    K  +   +  + +AI   
Sbjct: 248 TARDIFLFACYTGAAYCDLMELDKSHLVRDDEGSLWLKFNRHKTGVPCRVKLLPEAIR-- 305

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                  L+ + +  L   I+ K      +Q  ++ LR   G+    T HT RH+FAT +
Sbjct: 306 ---LMEKLHSDGRETLLPCIKYK-----NYQICLKALRLRAGISFPFTTHTARHTFATLI 357

Query: 274 -LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            L  G  + ++  +LGH  +S T+ Y  V  +   + 
Sbjct: 358 TLEQGVPIETVSKMLGHSNISMTERYAKVTPQKLFEE 394


>gi|241664436|ref|YP_002982796.1| integrase family protein [Ralstonia pickettii 12D]
 gi|240866463|gb|ACS64124.1| integrase family protein [Ralstonia pickettii 12D]
          Length = 351

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/300 (16%), Positives = 112/300 (37%), Gaps = 22/300 (7%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             + +++ + + +     T +S     +    F   Y        ++  +S   +  +  
Sbjct: 64  ALRRYMEEVSVTKK--PTTQRSERFTAQHLEAFFGKY--------SMAAVSADLVAKYRD 113

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT--TESNILNMRNLKKSNSLPRALNEKQA 134
            R      + +++  L+ +    +   +      T + + N+R         R L+  + 
Sbjct: 114 VRLAAGKSNNTVRIELAMLGHLFRTAIQEWSIGLTFNPVANIRKPSPGTGRDRRLSLDEQ 173

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GK 193
             L   V  H++    W       I+ L    G+R SE  +L    +  ++  + ++  K
Sbjct: 174 ARLFAAVSAHSNPMLGW-------IVGLAVETGMRSSEIATLRRSQVDLNRRVVNLRDTK 226

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
               R+VPL  +    +          L+ ++      G  GK   P VFQ+    + R 
Sbjct: 227 NGSARVVPLTRAAADVLRLALSNPIRPLDSDLVFFGEPGRDGKR-RPYVFQKLWTSIVRD 285

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +GL      H LRH   + L+  G   + + +I GH  +   + YT++ +++  + +  +
Sbjct: 286 IGLA-DLHFHDLRHEAVSRLVEAGLSDQEVAAISGHKSMQMLKRYTHLRAEDLVEKLDAV 344


>gi|302384655|ref|YP_003820477.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302195283|gb|ADL02854.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 386

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/322 (18%), Positives = 126/322 (39%), Gaps = 40/322 (12%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQF-LIFLAFYTEEKITIQTIRQLSYTEI 71
           +  KE   WL + ++   +   T +SY      + + F      E+I++QT    S    
Sbjct: 62  DAAKEFTAWL-HGDLTGRVKPSTYESYYRCIVGYVIPFYQEKGNEQISLQTTSDFSCRI- 119

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
                    + +     ++ L+  K+ L+ + KR    +S +  ++  +K ++  +A + 
Sbjct: 120 ------NNHEGVSVSYRRKILTIYKTALREIMKRNKECDSILNAIQMPRKISAEVQAFSV 173

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           K+   +++  ++ +  +           + L +  G+R+ E   L  ++I  +  T+ + 
Sbjct: 174 KE-QRMLERTIIQSPDKRCLG-------ILLCFYTGIRLGEVCGLKWEDIDFEAGTMVVT 225

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR-------------------G 232
                 RI     + +K +L             I LP F                     
Sbjct: 226 RT--VSRIKNFDETKKKTVLYIGKPKSIHSVRKIPLPDFLLELARELKMERSDNNHFILT 283

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
               P++P  +Q+  ++L  +  +      H +RH+FAT  L  G D++++  ILGH  +
Sbjct: 284 NSEYPMDPRKYQKLFQKLLTHASVKKR-KFHAIRHTFATRALELGIDIKTLSEILGHSNV 342

Query: 293 STT-QIYTNVNSKNGGDWMMEI 313
           S T  IY +   +     + ++
Sbjct: 343 SITLNIYAHSMYEQKKKAIGKL 364


>gi|260593265|ref|ZP_05858723.1| integrase [Prevotella veroralis F0319]
 gi|260534822|gb|EEX17439.1| integrase [Prevotella veroralis F0319]
          Length = 409

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 96/278 (34%), Gaps = 19/278 (6%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSLKRSLS 93
           ++ SY         F+      K++     QL+   I  F           + S     +
Sbjct: 133 SMASYHSTKIHLQEFIQKKY--KVSDLAFSQLTENFIHEFQQYFLGECGFQESSFYNVAT 190

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            +K+  +   +  +        ++  K +  LP+AL+      L          E +   
Sbjct: 191 HLKTVCRLAYREGLADILLFDKVKISKGNKKLPKALDRGAFEKLKTLHFEDLEEEMETA- 249

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
                I       G    + + L   + + DD+ +L ++    K  +   +  + +AI  
Sbjct: 250 ---RDIFLFACYTGAAYCDLMELDKSHLVRDDEGSLWLKFNRHKTGVPCRVKLLPEAIR- 305

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                         LP         +    +Q Y++ LR   G+    T HT RH+FAT 
Sbjct: 306 -LMEKLHSDERETLLPF--------MGYATYQSYLKALRLRAGISFPFTTHTARHTFATL 356

Query: 273 L-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           + L  G  + ++  +LGH  +S T+ Y  V  +   + 
Sbjct: 357 ITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFEE 394


>gi|229548402|ref|ZP_04437127.1| phage integrase family site specific recombinase [Enterococcus
           faecalis ATCC 29200]
 gi|255971030|ref|ZP_05421616.1| predicted protein [Enterococcus faecalis T1]
 gi|257088973|ref|ZP_05583334.1| predicted protein [Enterococcus faecalis CH188]
 gi|257420756|ref|ZP_05597746.1| recombinase [Enterococcus faecalis X98]
 gi|307275549|ref|ZP_07556690.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|307290609|ref|ZP_07570517.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|312904825|ref|ZP_07763965.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|229306618|gb|EEN72614.1| phage integrase family site specific recombinase [Enterococcus
           faecalis ATCC 29200]
 gi|255962048|gb|EET94524.1| predicted protein [Enterococcus faecalis T1]
 gi|256997785|gb|EEU84305.1| predicted protein [Enterococcus faecalis CH188]
 gi|257162580|gb|EEU92540.1| recombinase [Enterococcus faecalis X98]
 gi|306498323|gb|EFM67832.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|306507654|gb|EFM76783.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|310631831|gb|EFQ15114.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|315143975|gb|EFT87991.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2141]
 gi|315158786|gb|EFU02803.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0312]
 gi|315161044|gb|EFU05061.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0645]
 gi|315576493|gb|EFU88684.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0630]
          Length = 389

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 61/339 (17%), Positives = 124/339 (36%), Gaps = 53/339 (15%)

Query: 7   PEIVSFELLKERQNWLQNLEI-ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           P+++ ++ L      L  LE+ ++ ++  T   Y+           F+  +KI +  ++ 
Sbjct: 69  PDLLFYDYL------LNYLEVSKKQVAFNTYVGYKHYVHN--RIYKFFYPKKIKLNRLKP 120

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
                ++ F            ++    + I+  L+     ++ + +    +R  KK   +
Sbjct: 121 Y---HLQDFYQYMLNDDCTANTVIHYHAFIRKALQEAVITELISTNVADKVRKPKKKQFV 177

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
            +  N+ + L L+D             + +   ++ L    GLR SE L L    I    
Sbjct: 178 SQVYNQHEILKLLDI----------LSEEKLYLVVLLTAFYGLRRSEVLGLKWSAIDFLN 227

Query: 186 STLRIQG-------------KGDKIRIVPLLPSV-------------RKAILEYYDLCPF 219
             + I               K D+ +      ++              K   +   L   
Sbjct: 228 KKIMINHVIIENPENMSQLIKKDQTKNSSSYRTLPLVETIERALVNQAKWQQDNRILLGE 287

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
           D  L     +F    G+ + P      + +L +  GL      H LRHS A+ +L +G +
Sbjct: 288 DYILKDSEYVFTMEDGRLMKPQYVTHRLSKLIKKNGL-KKIRFHDLRHSNASIMLDSGQN 346

Query: 280 LRSIQSILGHFRLSTTQ-IYTNVNS---KNGGDWMMEIY 314
           ++SIQ  LGH   STT  +YT++ +   +   + +   +
Sbjct: 347 MKSIQEWLGHASYSTTANLYTHLTAGVKERAAEALENAF 385


>gi|29377419|ref|NP_816573.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|29344886|gb|AAO82643.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
          Length = 381

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/330 (16%), Positives = 121/330 (36%), Gaps = 46/330 (13%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           +N P +++F+ L   + WL    +       T++           F   +    +    +
Sbjct: 62  DNKPSVLTFKQL--YEKWLAQQRL-------TIK--PSSIAVNKRFAEKHILPYLGDCKL 110

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN--MRNLKK 121
            +++  + +  ++K   Q     S  R L+     ++Y +  ++   + +    +   K+
Sbjct: 111 DEITVIQCQDLVNKWFNQGHKQYSFYRKLTA--QIMRYGESMELMNTNPMRKTILPKWKE 168

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
             +      +++     D +        ++ + +  A   LL   G R SE L+L  +++
Sbjct: 169 EETKLEYYTKQELNHFFDCL-------KQYGNFKQLAFFRLLAFTGCRKSEVLALQWKDL 221

Query: 182 MDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN--- 222
                ++ I                       R + L     + + ++  +   D     
Sbjct: 222 DITNKSVYIGKTVAQDEFYNILTQTPKTASSTRSISLDNETLQIMAKWRTIQRSDYFQMG 281

Query: 223 ---LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
               + +  +F     K L+P V   ++  L +   LP S T H  RH+ A+ LL +G  
Sbjct: 282 FNTSSEEQYIFTNNHNKLLSPNVVNIWLNCLIKKYDLP-SITPHHFRHTHASLLLQSGVP 340

Query: 280 LRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
           ++ +   LGH   + T +IY++V  +    
Sbjct: 341 IKEVAERLGHTSTAITDRIYSHVMPEEKEK 370


>gi|256842147|ref|ZP_05547652.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298374988|ref|ZP_06984945.1| integrase [Bacteroides sp. 3_1_19]
 gi|256736463|gb|EEU49792.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298267488|gb|EFI09144.1| integrase [Bacteroides sp. 3_1_19]
          Length = 407

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/309 (15%), Positives = 108/309 (34%), Gaps = 25/309 (8%)

Query: 14  LLKERQNWLQNLEIERGLSKL----TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           LL   + +++N   E+ +       +L++Y         FL      K++      L  +
Sbjct: 109 LLGYFRRFIRN--FEKRVGINRTVGSLRAYSNAYSHIERFLQAQY--KLSDIPFSALDRS 164

Query: 70  EIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            I  +    RT++ +   ++      +K+ +       I T S  +      +   + + 
Sbjct: 165 FIDKYDLYLRTERNLAPGTIINLTVQLKTIVGEAIADGIITASPFMGYE-PMRPKHVQKY 223

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L  ++   ++   L    H       R+  +       G+   +   LT  N+   +  +
Sbjct: 224 LTAEELHRIMTTPL----HRQTLYHVRDMFLFSCF--TGIPYGDMRLLTKDNLCLAEDGI 277

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
                  +   +     +    L+           +  LP++               Y++
Sbjct: 278 WWIKSARQKTKIEFEIPLLDLPLQILKKYSGTAPGDKLLPMYCN--------STLNLYLK 329

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++ R   +      H  RH++AT + LS+G  L ++  +LGH ++ TTQIY  V  +   
Sbjct: 330 EIARICHIDRPLVFHAGRHTYATEITLSHGVPLETVSRMLGHSQIETTQIYAKVTDEKID 389

Query: 308 DWMMEIYDQ 316
                +  +
Sbjct: 390 ADTKALNRK 398


>gi|329964321|ref|ZP_08301402.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328525370|gb|EGF52418.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 403

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/312 (16%), Positives = 108/312 (34%), Gaps = 25/312 (8%)

Query: 10  VSFELLKERQNWLQNLEIERGLSK--LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           V   LLK  +   + L I    S+   +  SY            +     +       ++
Sbjct: 100 VPVTLLKAGEEEREKLRI---RSEVINSTSSYRQSKSSQSYLHEYLLSLGMRDIAFEDIT 156

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
                 +    +++  G   +   L+ +   +     R++   + + ++   KK +   +
Sbjct: 157 EDFGWGYKLYLKSKDCGAGHINHCLTWLNRLVYIAVDREVIRFNPLADVPYEKKPDYKLK 216

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDD 184
            ++  +   +++          +  +    A ++  +  GL   +   L P +I      
Sbjct: 217 HISRAELQRIMEQ-----PMPERLQELTRRAFIFSAF-TGLSYVDVKRLYPSHIGTTAGG 270

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           +  +RI  K   +     L  V + IL  Y+        +   P+F       L      
Sbjct: 271 RRFIRINRKKTDVESFIPLHPVAEQILSLYNT------TDDGRPVFPLPNRNRL-----W 319

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             I ++    G+  + + H  RHSF T  LS G  + SI  ++G   + TTQ Y  V   
Sbjct: 320 YCIHEIGILAGVKENLSYHASRHSFGTLTLSAGVPIESISKMMGRTNIRTTQGYAKVTDD 379

Query: 305 NGGDWMMEIYDQ 316
              + M  + ++
Sbjct: 380 KISEDMDRLMER 391


>gi|297182902|gb|ADI19052.1| integrase [uncultured delta proteobacterium HF0070_07E19]
          Length = 380

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 90/255 (35%), Gaps = 19/255 (7%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           ++  + I  ++Y   +  I+K         ++      ++  +++  +R +        +
Sbjct: 126 QLQPEQIDHINYERWKRNIAK----GRSPTTVCHCGELLRRIVRFGTERNLCNGLPF-KL 180

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              K  N     L  +Q   L++ + L               +       GLR  E L L
Sbjct: 181 SLKKPDNRTTEYLEREQLNQLIEALKLEEPITGN--------LFTFALFTGLRRGELLRL 232

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
              +I  +Q  ++++           L     ++LE         + +    +F   +G 
Sbjct: 233 EWSDINFEQGIVQLRDTKAGKDQTLPLSEKALSLLE-----NHPRHQSGCDYVFPSPQGC 287

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             +     R  +++     LP      H LRH + + L  NG ++  ++ +L H  +  +
Sbjct: 288 QWSRSSLDRVFKRIASRSNLPEGFRLLHGLRHQYGSMLAENGANIVELRDLLRHSDVRVS 347

Query: 296 QIYTNVNSKNGGDWM 310
           + Y + + ++    +
Sbjct: 348 ERYLHSSDEHLRKRI 362


>gi|295104559|emb|CBL02103.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 391

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 112/296 (37%), Gaps = 45/296 (15%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T  SY+    +  + + ++ +  I +  ++    T+++ F +K+  +++   S+    + 
Sbjct: 91  TYASYQGMVER--VIVPYFRKRNIKLVDLK---ATDLQDFYTKQL-ERVKANSVIHYHAN 144

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           I   LKY  K  +   +    +   KK+       +  +   L +      +  TK    
Sbjct: 145 IHKALKYAVKIDLIPTNPADKVERPKKNEFKGSYYSADEIHALTEI-----AEGTKLEIP 199

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG--------------------KG 194
                + L    GLR SE L L    I  + +TL I+                       
Sbjct: 200 -----VLLASFYGLRRSEVLGLKWDAIDFEANTLEIKHIVTQASIDGKKVLVQADRAKTK 254

Query: 195 DKIRIVPLLPSVRKAILE-------YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
             +R +PL+P +R  +L        Y  LC    N      L     G  + P       
Sbjct: 255 SSLRTLPLVPPIRDRLLMLKGQQDTYRRLCGKSYNREYLGYLCVDEIGNIIRPNYVSEQF 314

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVN 302
            +L    GL      H LRHS A+ LL+NG  ++ IQ  LGH   STT  IY +++
Sbjct: 315 PKLLEKNGL-RPIRFHDLRHSCASLLLANGVPMKQIQEWLGHSDFSTTANIYAHLD 369


>gi|294777960|ref|ZP_06743395.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294448169|gb|EFG16734.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 354

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/293 (20%), Positives = 115/293 (39%), Gaps = 38/293 (12%)

Query: 36  LQSYECDTRQF-------LIFLAFYTEEKITIQTIRQLSYTEIRAFISK----RRTQKIG 84
           L+ Y    R+         +    +   K T + I      + R ++      RR  +I 
Sbjct: 79  LEYYRQQLRKHDQKWEFVYLHFKNFVHGKCTFEEIDIDLCNKFREYLLSAKKLRRNGRIT 138

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S     S  + FLK L +  +   +    +  ++  +++  AL+ ++   L +     
Sbjct: 139 RNSASGYWSTFRGFLKILYRNGLIKTNVNDFLEKIETEDTMKEALSVEELYQLAET---- 194

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----DQSTLRIQGKGDKIRIV 200
                K    + +++   +    LRIS+ L+L  ++I+D     +    I  K     I+
Sbjct: 195 ---PCKKPIVKIASLFSCM--TSLRISDILALRWEDIVDYSAGGKCVHIITQKNKAEDII 249

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+       I           + + +  +F+G     L     Q  +++  R  G+  + 
Sbjct: 250 PISEEALGLI---------GYSSDKKGLVFKG-----LMRSWTQMPMKEWIRSAGITKNI 295

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           T H+ R +FAT   + G D+R+IQSI+ H  ++TT  Y  V   N  +   +I
Sbjct: 296 TFHSYRRTFATLQGAAGTDIRTIQSIMAHKSITTTMRYMKVVDSNKREASKKI 348


>gi|146296400|ref|YP_001180171.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409976|gb|ABP66980.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 326

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 94/289 (32%), Gaps = 31/289 (10%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T + Y          L     + I  + +  +   +I+  I    T K+ D ++ +    
Sbjct: 52  TQKRYRE--------LLIPAIKAIGTKPLSDIKPLDIQK-IYMNLTGKLSDSTILKLHRL 102

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +    K+    +  +++ +  +        +    + + A   ++ +   T +       
Sbjct: 103 LHEIFKHAVMWEYISDNPVKKVLPPSPEKKVFDVWDVETAKRFLEVIRNETIYYP----- 157

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP---------- 204
                + +    G+R  E +SL   ++  +   + +       R +              
Sbjct: 158 -----VLIALHTGMRAGEIVSLKWYDVNFEARIISVVKSVRNNRGLKTSDVKTKTSKRSV 212

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            +   +          +       +   +    L  G   +  + L +    P+    H 
Sbjct: 213 YINDVLFSELKNLYETIKPKPDDFVCPRLPTGNLTVGYLSKRFKLLVKRYNFPV-IRFHD 271

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDWMME 312
           LRH+FAT +LS G + + +  ILGH  +  T   Y++V        M E
Sbjct: 272 LRHTFATLMLSLGVNTKIVAEILGHSDIKLTADTYSHVLPTMQESAMKE 320


>gi|300770347|ref|ZP_07080226.1| possible integrase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762823|gb|EFK59640.1| possible integrase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 312

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 98/275 (35%), Gaps = 28/275 (10%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           LS+ T++ Y+    QFL ++                ++  +  +  +         +  +
Sbjct: 37  LSQSTIKDYKYRIGQFLDYVNSSG-----------FNHNTLLNYKRQLIKCDFSVSTKNK 85

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKK-SNSLPRALNEKQALTLVDNVLLHTSHET 149
                K FL+ L +     +   +N++  K+        L++     L ++         
Sbjct: 86  YFISAKIFLRELYRLDYLEKDITINVKGFKQNHQHKKDGLSDDDISILQNHCKTLQP--- 142

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI-VPLLPSVRK 208
              + R  AI+ L    GLR  E   L  ++I        + GKG   +  + L P   K
Sbjct: 143 TPENLRLKAIISLFLFQGLRQIEVCRLDIKDIDLKNKCAFVHGKGRDDKELIWLHPFTVK 202

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGI----RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           A+ EY     F         LFR      R   L     +  I+ L   LG+    T H 
Sbjct: 203 AVKEYLKCTRF-----KDGALFRSNSNFCRNHRLTTKSIRTIIKGLLNDLGID--GTTHG 255

Query: 265 LRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298
            RH F T L+ +  G+L ++     H  +   ++Y
Sbjct: 256 FRHFFTTRLIKSYKGELLTVSKYTRHRSIQMLEVY 290


>gi|89147520|gb|ABD62620.1| integrase [uncultured bacterium]
          Length = 163

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/110 (33%), Positives = 53/110 (48%)

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G+G       L    ++A   +     F      + P    +R   L+    QR ++   
Sbjct: 53  GRGSVYLPFALERKYKEAAHSWLWQYVFAAKGFSEDPRSGEVRRHHLDKVTVQRKVKAAA 112

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               +    T H LRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 113 ERARIGKVVTPHVLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|29347339|ref|NP_810842.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253570442|ref|ZP_04847850.1| transposase [Bacteroides sp. 1_1_6]
 gi|29339239|gb|AAO77036.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251839391|gb|EES67474.1| transposase [Bacteroides sp. 1_1_6]
          Length = 403

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 60/332 (18%), Positives = 125/332 (37%), Gaps = 38/332 (11%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYEC------DTRQFLIFLAFYTEE 56
            N++PE +      ER+     L + R     +  +Y        + RQF+        +
Sbjct: 97  ANSVPEYLLQAGEVERER----LRV-RSKEINSTSTYRQSKTTQLNLRQFI---ESRGMK 148

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
            IT   I +      + F+ K    + G   +   L  +   +     R+I   + I ++
Sbjct: 149 DITFSDITEEFAESFKVFLKKELGHRNGH--VNHCLCWLNRLIYIAVDREILRANPIEDV 206

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              +K     R ++  +   +++     T      ++      ++     GL  ++  +L
Sbjct: 207 AYERKETPKLRHISRSELKRMME-----TPLPDPMMELARRTFIFSSL-TGLAYADTRAL 260

Query: 177 TPQNI---MDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
            P++I    + +  +RI+  K D    +PL P   + +  Y          +   P+F  
Sbjct: 261 HPRHIGTTSEGRRYIRIRRAKTDVEAFIPLHPIAGQILELYNT-------TDDDRPVFPL 313

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                    V    +  +   LG+  + + H  RHSF T  L+ G  + SI  ++GH  +
Sbjct: 314 PV-----RDVLWYEVHGMGVALGMKENLSYHMARHSFGTLTLTAGIPIESIARMMGHTNI 368

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
            +TQ+Y  V  +     M  + ++  P+  ++
Sbjct: 369 DSTQVYAQVTDRKISSDMNRLMERRKPAAGKE 400


>gi|54022678|ref|YP_116920.1| putative phage integrase [Nocardia farcinica IFM 10152]
 gi|54014186|dbj|BAD55556.1| putative phage integrase [Nocardia farcinica IFM 10152]
          Length = 403

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 98/262 (37%), Gaps = 35/262 (13%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +  L++ EI+ ++ ++ +      +++++L  +     Y    +    +    +   K+ 
Sbjct: 127 VADLAHEEIQQWVIEQVSGGAAGGTVRKNLGVLSQICDYAVITRRIAVNPCSTVNRPKQR 186

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            +  R L+  +   L +                N   + +L  CGLR +E   L   ++ 
Sbjct: 187 LAKRRYLSGMEVERLAEQ------------AGGNWLTVMVLAYCGLRFAELAGLQVSSVS 234

Query: 183 DDQSTLRIQG--------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
             +  L+I+               K  + R VP    + + +  +      D        
Sbjct: 235 LQRRRLQIERTITEVDGVLVTKAPKDHQRRSVPFPAFLAEPLERHLAGRRPDSE------ 288

Query: 229 LFRGIRGKPLNPGVFQRYIRQ-LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           +F    G  L     +R       +  GL    T H +RH+ A+  +S+G  + ++Q +L
Sbjct: 289 VFTSSTGAILRVRNMRRAWWDGAAKAAGLE-GLTPHEMRHTAASLAVSHGASVLALQRML 347

Query: 288 GHFRLSTT-QIYTNVNSKNGGD 308
           GH + STT   Y ++   +  +
Sbjct: 348 GHDKPSTTLDFYADLFDDDLDE 369


>gi|15614912|ref|NP_243215.1| hypothetical protein BH2349 [Bacillus halodurans C-125]
 gi|10174969|dbj|BAB06068.1| BH2349 [Bacillus halodurans C-125]
          Length = 223

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 100/231 (43%), Gaps = 14/231 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L    + +  + +  R  +K T+ +   +  Q   FL    E K  I  +  + + ++++
Sbjct: 3   LEDVLKEYEYHCQA-RNFTKKTMTNKRQEYNQLKQFL----ETKRGITELESIYHQDLKS 57

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +I  ++   +  +S+      IK+F  +    +   E+ +  +   K    +   L   +
Sbjct: 58  YIRSKQMSGLKPQSIHAIAKQIKAFFNWCVSEEYLKENPMDKVALPKVPKEVLTGLTTDE 117

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
            + ++D+          +++ RN AI+ ++  CGLR  E   L   N+ D    +++ GK
Sbjct: 118 VVKMMDSF-----KGDSYLEIRNKAIIAMMSDCGLRAMEIAGLKECNVRDTD--IKVFGK 170

Query: 194 GDKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGV 242
           G+K R+V + P+++K +L+Y       F   +      F   +GK ++   
Sbjct: 171 GNKERMVFISPALKKILLKYERAKKNYFKDKIQYSDSYFLAYQGKAMSTST 221


>gi|317055795|ref|YP_004104262.1| integrase family protein [Ruminococcus albus 7]
 gi|315448064|gb|ADU21628.1| integrase family protein [Ruminococcus albus 7]
          Length = 413

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 57/336 (16%), Positives = 124/336 (36%), Gaps = 60/336 (17%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQK 82
              +++GL   T Q+Y+     F+ +             ++ + Y+++ +F ++    + 
Sbjct: 78  WFALKKGLKDNTFQNYKYMYDSFIRY-------DFGKYKVKGIRYSDVLSFYNRLIYERG 130

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKS----NSLPRALNEKQALTL 137
           + + +++   + +   L    +      +   N +++ K++        RAL  ++    
Sbjct: 131 LKENTIEVIQNILHQVLDLAVQDNYLRTNPSDNALKHFKQASNFDTEKKRALTREE---- 186

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK---- 193
            D  + + S   K+       I Y++   G+R+ E   L  +++  D   + I       
Sbjct: 187 QDIFMNYISRNGKYHHW--YPIFYIMLNTGMRVGEITGLRWEDVDLDGEFISINHTLVYY 244

Query: 194 ----------------GDKIRIVPLLPSVRKA-ILEYYDLCPFDLN-----LNIQLPLFR 231
                              +R +P+L  V++A I E +     ++            +F 
Sbjct: 245 KHKENGCYFNIHTPKTKAGVRTIPILNGVKEAFIQEEHYQREAEIECTVTIDGYTNFVFV 304

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLG---LPL-----------STTAHTLRHSFATHLLSNG 277
              G   N G   + IR++ R      +               + H+LRH+FAT L  +G
Sbjct: 305 NRFGNVHNQGTLNKAIRRITRDCNEEIIAKSKGKANVTLLPRFSCHSLRHTFATRLCESG 364

Query: 278 GDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMME 312
            +++ IQ +LGH   +TT  +Y             E
Sbjct: 365 VNIKVIQDVLGHADFNTTMNVYAEATKDLKQREFKE 400


>gi|89147371|gb|ABD62546.1| integrase [uncultured bacterium]
          Length = 163

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/111 (31%), Positives = 53/111 (47%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +G G+             A  ++     F        P    +R   L+    Q+ +++ 
Sbjct: 52  EGYGNVFLPDAFARKSASASRDWIWQYVFPAEQRSTDPRSGAVRRHHLDESGLQKAVKRA 111

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                +P   T HT RHSFATHLL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 112 AELAQIPKRVTCHTFRHSFATHLLEDGYDIRTVQELLGHRDVSTTMIYTHV 162


>gi|146297662|ref|YP_001181433.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145411238|gb|ABP68242.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 332

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/310 (15%), Positives = 104/310 (33%), Gaps = 36/310 (11%)

Query: 18  RQNWLQNLEIERGLS----KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
            + ++     E   S      T + Y    +  L  +      K+    I+ +       
Sbjct: 38  FKEFVDY-WFEAYASTAVKPSTQKRYRQLLKPALRAIGNKPLNKVKPLDIQNI------- 89

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +I+   TQ   + ++ +    +    K+ +  +  +++ +  +        +    + + 
Sbjct: 90  YIALAGTQ--SNCTILKLHRLLHEIFKHAQMWEYISDNPVKKVVPPTPEKKVFDVWDVET 147

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
           A   ++ +        K       A++ L    G+R  E LSL   ++  +   + I   
Sbjct: 148 AKRFLEII--------KDEPIYYPALIAL--HTGMRAGEILSLKWCDVNFETRVISIVKS 197

Query: 194 GDKIRIVPLLP----------SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
             K R +  +            +   + +                +   +    L     
Sbjct: 198 ERKNRGLKTVNLKTKTSKRAVYMNDILYKELKNLYEITKPKPDDFVCPRLPTGNLTVNYL 257

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVN 302
            R  ++L +    PL    H LRH+FAT +LS G + + +  ILGH  +  T   Y++V 
Sbjct: 258 SRKFKKLVKKHNFPL-IRFHDLRHTFATLMLSLGVNTKIVAEILGHSDIKLTADTYSHVL 316

Query: 303 SKNGGDWMME 312
                + M E
Sbjct: 317 PTMQEEAMKE 326


>gi|320353450|ref|YP_004194789.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320121952|gb|ADW17498.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 357

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 111/300 (37%), Gaps = 20/300 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL     +L++   E+  +  T        RQ         +E     T  Q+     R 
Sbjct: 57  LLDWATEYLRH--AEQNFTGKTFDEKRIAFRQLFACPGINPKESANRLTALQVQKALQRQ 114

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            +S  R+    ++  K   +     +K+L    +  ++    +              E+ 
Sbjct: 115 SVS--RSGNAANKDRKNLSAAWSWGVKFL---DLPIDNPFSKVEKFASERV------ERY 163

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
             TL D   +    E      ++  +LY     G R  E   LT  ++   +  +R+  +
Sbjct: 164 VPTLDDFWKIFHIIEDD----QDKLMLYCYLQTGARRDELFRLTWADVDFFRKRIRLSWR 219

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            +K+          K  L  + L     + +I+  +F  IR + L+    Q ++++L + 
Sbjct: 220 KNKVGEWRSQWLSVKDDLVEWLLRHRKKSCDIKEHVF--IREQKLSYQYRQHWLKRLCKK 277

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+      H +RH FA+ L +    L  IQ +L H  L+TTQ Y +   K   + +  +
Sbjct: 278 AGV-KPFGFHGIRHLFASILAAQNVPLVEIQYMLRHTSLATTQRYIHRLKKENREVLAAL 336


>gi|168749532|ref|ZP_02774554.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4113]
 gi|168773983|ref|ZP_02798990.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4196]
 gi|168782823|ref|ZP_02807830.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4076]
 gi|208808987|ref|ZP_03251324.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4206]
 gi|208812985|ref|ZP_03254314.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4045]
 gi|208818623|ref|ZP_03258943.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4042]
 gi|254796314|ref|YP_003081151.1| tyrosine recombinase [Escherichia coli O157:H7 str. TW14359]
 gi|187770205|gb|EDU34049.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4196]
 gi|188016199|gb|EDU54321.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4113]
 gi|188999762|gb|EDU68748.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4076]
 gi|208728788|gb|EDZ78389.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4206]
 gi|208734262|gb|EDZ82949.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4045]
 gi|208738746|gb|EDZ86428.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7
           str. EC4042]
 gi|209749386|gb|ACI73000.1| type 1 fimbriae regulatory recombinase protein FimB [Escherichia
           coli]
 gi|254595714|gb|ACT75075.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli O157:H7 str. TW14359]
          Length = 200

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 65/181 (35%), Gaps = 8/181 (4%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K  N     L   +  +L+       +  T    ARN  +  L +  G R SE   L   
Sbjct: 4   KADNKKRNFLTHSEIESLL------KAANTGPHAARNYCLTLLCFIHGFRASEICRLRIS 57

Query: 180 NIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           +I      + I   K        LL    +A+  +  +     +   +  +F   +G PL
Sbjct: 58  DIDLKAKCIYIHRLKKGFSTTHSLLNKEVQALKNWLSIRTSYPHAESE-WVFLSRKGNPL 116

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +   F   I       GL L    H LRHS    L + G D R IQ  LGH  +  T  Y
Sbjct: 117 SRQQFYHIISTSGGNAGLSLEIHPHMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWY 176

Query: 299 T 299
           T
Sbjct: 177 T 177


>gi|120602532|ref|YP_966932.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
 gi|120562761|gb|ABM28505.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
          Length = 342

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/273 (14%), Positives = 98/273 (35%), Gaps = 24/273 (8%)

Query: 42  DTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY 101
              +    L  +   ++T   I  + Y ++ AF+  R+       + +R L  +K+  ++
Sbjct: 83  WLAEISWLLNKFVLPELTKAPIDDIRYPDVIAFV-DRQWGDRALATRQRYLGYLKAIFRF 141

Query: 102 LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
             +      + +   + +++     R L  +    ++ +                   + 
Sbjct: 142 AVEHGYAKNNPLAKWKKVREPKRDMR-LTVEDLGKIMRH-----------AAPHLRWAIE 189

Query: 162 LLYGCGLRIS--EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           + +  G R    E   +   ++   Q  + ++G         +       IL  +     
Sbjct: 190 VEWELGTRPGPTELFRIRWDDVDFAQCIVHVRGTKTHEANRVIP------ILPEFRDRLA 243

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
                +        +G+P+      + +++     G+      + +RH +A+ +L+NG D
Sbjct: 244 ATKAAMGGEYVVSYKGEPVKR--LNKALQRAAERAGIGYPVRMYDIRHLYASVMLANGSD 301

Query: 280 LRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMM 311
           L ++  ILGH  ++TTQ  Y +V     G  + 
Sbjct: 302 LAAVSKILGHSTIATTQEHYYHVLKGEMGRAIA 334


>gi|58616530|ref|YP_195659.1| putative integrase [Azoarcus sp. EbN1]
 gi|56315992|emb|CAI10635.1| putative integrase [Aromatoleum aromaticum EbN1]
          Length = 280

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 90/234 (38%), Gaps = 21/234 (8%)

Query: 46  FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKK 104
           FL F          + T+  ++   I AF+    R +    RS    L+ ++SFLK+   
Sbjct: 3   FLGFAEARLGRSPALITLADITPELITAFLDHLERERHNSVRSRNARLAALRSFLKFAAH 62

Query: 105 RKITT---ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
           R +++     + L +   +    +   L+ ++ L ++       + +  W   R+  +L 
Sbjct: 63  RDVSSLQVIEHALGVPAKRFERPMLGYLSREEMLAVI------GTPDGTWFSQRDHVLLL 116

Query: 162 LLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           LLY  G R+SE   +    ++       + + GKG K   VPL  S  +AI  +      
Sbjct: 117 LLYNTGARVSEIAGVKVGEVVLADGAACVHLHGKGRKQSSVPLWHSTVRAIRVWL---RR 173

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTAHTLRH 267
           +   +   PL     G+ ++     + + +  +              + H +RH
Sbjct: 174 NPQFDSDSPLLPNRDGQSMSRWNVMQRLDRAVQVAAESCPALAARQISPHVIRH 227


>gi|255975295|ref|ZP_05425881.1| integrase [Enterococcus faecalis T2]
 gi|255968167|gb|EET98789.1| integrase [Enterococcus faecalis T2]
          Length = 388

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 103/279 (36%), Gaps = 29/279 (10%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK---IGDRSLKRSLSGIKSFL 99
            ++ L +      EKI    I++     ++      +  K   + +  +K+  + ++   
Sbjct: 102 LKRALAYFGKMQMEKIRPIHIQEFQQFLVQECFVTNKEGKIRPLSNNYIKQIFNKLRIIF 161

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           K     ++  E+ +  +  ++   S+       +   +      + S+   + +A    +
Sbjct: 162 KRAMVLEVIDENPVDTIGKIRTQRSVVAFWTVDEFKKVY-----NCSYRCDFQEAFYKRM 216

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQST------LRIQGKGDKI----------RIVPLL 203
           +  L+  GLR  E  +L   +I   + T      L I+ + D            R + L 
Sbjct: 217 MRFLFVTGLRSEELFALQWPDIDFHKGTCCVNKSLYIRTRTDYDFSDTKNASSIRTITLD 276

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
                 + E+ +      +    +  F G+   P +P  F   +++L    G+      H
Sbjct: 277 KQTIVDLREWKETQKTIGDDLGFIFTFDGL---PPSPKTFLGRVKKLAEIAGV-KPIHLH 332

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
            LRHS    L+ +  ++ ++   LGH  + TT   Y ++
Sbjct: 333 GLRHSHVAFLIEHNNNIYAVSKRLGHSSVKTTLDKYGHL 371


>gi|187921989|ref|YP_001893578.1| integrase domain protein SAM domain protein [Burkholderia
           phytofirmans PsJN]
 gi|187720427|gb|ACD21649.1| integrase domain protein SAM domain protein [Burkholderia
           phytofirmans PsJN]
          Length = 397

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 65/335 (19%), Positives = 119/335 (35%), Gaps = 64/335 (19%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR- 79
           +L++L         T ++Y     +FL +LA            RQ++   +RA+ + RR 
Sbjct: 43  FLRSLVDPASPRPNTWRTYAYHLARFLKWLAQQEI------AWRQVNRDVLRAYYTARRF 96

Query: 80  --TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-------NMRNLKKSNSLPRALN 130
             T+ I  R+     + +  F  +         + +         +  +     L  +L 
Sbjct: 97  VQTRPISARTWNNVAAALTRFYAWAVVAGEVPATPVSYREIRAGRIAAVPGIRPLRSSLT 156

Query: 131 E-------KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           E       +     +    +  +        R+ A   LL   G+R++EA SL   ++ D
Sbjct: 157 EHVSSIPVRYVPLRIYLSKVRPAFGGTRTAERDRAFADLLLATGMRVAEANSLLLADLPD 216

Query: 184 DQS-----------TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL----- 227
             +           TL+   KG K+R++ +   V + +  Y      +   +I +     
Sbjct: 217 PDAPECWGKKTIPLTLKRGTKGGKVRVIRIPIHVLRTVYRYVAEDRENALADISMSQRPA 276

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG--------- 278
            L+    G P+    +    R+  +  G     T H LRH+FA H L+            
Sbjct: 277 ELWVTETGAPMKTARWHDVFRRASKTSG--NQCTPHMLRHAFAIHQLTAMIQRLISDPTY 334

Query: 279 --------------DLRSIQSILGHFRLSTTQIYT 299
                          LR +Q +LGH  L++T IY 
Sbjct: 335 RTDPHQPYRTLLKDPLRQLQRLLGHASLASTFIYL 369


>gi|310643234|ref|YP_003947992.1| integrase family protein [Paenibacillus polymyxa SC2]
 gi|309248184|gb|ADO57751.1| Integrase family protein [Paenibacillus polymyxa SC2]
          Length = 145

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 14/151 (9%)

Query: 173 ALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            + L  ++   ++  L+++ GKG K R   L  +    + +Y               LF 
Sbjct: 1   MVRLRLEDCDRERKVLKVRQGKGRKDRQTLLSEAAFAVVEQYIGW------EQPADWLFP 54

Query: 232 GIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
           G R    L     Q+   +     G+    + H+LRHSFATHLL NG DLR IQ +LGH 
Sbjct: 55  GQREGRHLTERSAQKVFEKALAEAGIRKQVSIHSLRHSFATHLLENGIDLRYIQELLGHQ 114

Query: 291 RLSTTQIYTNVNSKNGG------DWMMEIYD 315
            + TT+  T+V+ ++ G      D M E+ D
Sbjct: 115 SVRTTERCTHVSRRDIGRIQSPLDRMSELED 145


>gi|306833129|ref|ZP_07466259.1| phage integrase family site-specific recombinase [Streptococcus
           bovis ATCC 700338]
 gi|304424703|gb|EFM27839.1| phage integrase family site-specific recombinase [Streptococcus
           bovis ATCC 700338]
          Length = 385

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/327 (17%), Positives = 108/327 (33%), Gaps = 51/327 (15%)

Query: 18  RQNWLQNLE--IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            + W +  +  +ER  S  T      D  +       +    +    I +++  + + FI
Sbjct: 74  FEEWFRTYQDTVERTTSVRT-----DDIFRL------HILPTLGNIAISKITPWQCQEFI 122

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQA 134
           +    +    R++K+  S       +  K K+  E+ + ++   K+         N  + 
Sbjct: 123 T---EKGKTFRNIKQIKSYASQVFSFAVKMKLIAENPMRDVTLPKREQKQSDNFFNVDEL 179

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL------ 188
              +  V     ++       N A+  LL   GLR  E  SL   ++  D+  L      
Sbjct: 180 HEFLAIVKAEEPYK-------NYALFRLLAYSGLRKGELYSLRWSDMNFDKQILSVTKNL 232

Query: 189 -RIQGK--------GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK--- 236
            RI+GK           +R +PL       + E+      +       PL          
Sbjct: 233 GRIKGKAVEKSTKNRFSVRQIPLDAETTAILREWKQQSKKEKGQLSVTPLIDNDYMFTFV 292

Query: 237 -------PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
                  PL        ++++     L    T H  RH+ AT ++  G D  +    LGH
Sbjct: 293 DRDGKIQPLYQDYINSILKRIINKHNL-KKITPHGFRHTHATLMIEVGVDPVNAAKRLGH 351

Query: 290 FRLSTT-QIYTNVNSKNGGDWMMEIYD 315
                T   Y++     G   + +  D
Sbjct: 352 ASSQMTLDTYSHATEAGGEQTIKKFAD 378


>gi|41409062|ref|NP_961898.1| hypothetical protein MAP2964c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41397421|gb|AAS05281.1| hypothetical protein MAP_2964c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 372

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 67/325 (20%), Positives = 112/325 (34%), Gaps = 51/325 (15%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R L   T+ +     R+   F   Y           Q +  +  AFI   R+  +   S 
Sbjct: 41  RFLRAGTIGARLRLIRRLEAFSGLYPW---------QWAPADGEAFIDHLRSTTVEAVST 91

Query: 89  KRSLSG-IKSFLKY-----------------LKKRKITTESNILNMRNLKKSNSLPRALN 130
            RS    I  F++Y                    + I  E N +  +   + +   R L+
Sbjct: 92  ARSYEIDISLFMEYLLDPRYGWAGVCADQFGDVPQAIFHEGNSIQHKLDYEGDPRRRPLS 151

Query: 131 EKQALTLVDNVLLHTSH------ETKWIDARNSAILYLLYGCGLRISEALSLTPQN---- 180
             +   L D     +        +     AR++A+L  +Y  GLR +EA  L   +    
Sbjct: 152 YDEIQALFDAADARSGTIQGRGVKGALGAARDAAVLKTIYAFGLRRTEASRLDLVDLRRN 211

Query: 181 ----IMDDQSTLRIQG---------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
                      + ++          K   + +VP +  V + + ++        +   + 
Sbjct: 212 SQAPQFGGFGVVMVRYGKAPKGAPPKRRTVLLVPEMDWVVETLDQWLTEIRPRFSPPDRH 271

Query: 228 P-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           P L+   RG  L+P          R    L  S   H LRHS  TH    G   R +Q  
Sbjct: 272 PALWVTERGGRLSPRSINEAFVAARDDARLDRSLNLHCLRHSAVTHWTEFGYPARFVQEQ 331

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMM 311
           +GH   STT IYT+V+++     + 
Sbjct: 332 VGHAHASTTSIYTHVSNEYRNKLLK 356


>gi|325678051|ref|ZP_08157688.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324110268|gb|EGC04447.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 431

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/319 (17%), Positives = 116/319 (36%), Gaps = 45/319 (14%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            ++WL+ ++    +++ T +SY       + +      +     T+ +++  E++ F + 
Sbjct: 94  LRDWLETIKPT--IAETTYESYSQKLNSVVRYFDTVFPD----ITLAEVTAVELQKFYND 147

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +  + I   ++K   + I   LKY  K  + + +        K         N K+   L
Sbjct: 148 KFAEGITANTIKHYHANIHKALKYAVKIGLVSCNESEKTDRPKLDKYEATFYNSKELERL 207

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK---- 193
                      + +   R   ++ +    GLR SE + L    I  D +T+ I  K    
Sbjct: 208 F----------SVFRGDRMEVVVLIAAYYGLRRSEIIGLRWDAIDFDNNTITIHAKAYNV 257

Query: 194 ----------------GDKIRIVPLLPSVRKAILEYYDLCPFDL-------NLNIQLPLF 230
                               R +PL+P +   +    +   +         +   +  + 
Sbjct: 258 YEDGKLVVKFENKLKTKASHRTLPLIPYIADVLRAKKEQDEYRSTVLKSGYDHEYEDYIC 317

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
               G+ + P     +   + +   L      H LRHS A+ LL+NG  +++IQ  LGH 
Sbjct: 318 TDEFGRLITPNYVTDHFANVIKKYKL-KKIRFHDLRHSCASLLLANGVPMKAIQEWLGHS 376

Query: 291 RLSTT-QIYTNVNSKNGGD 308
               T   Y++++  +  D
Sbjct: 377 TFHVTADFYSHLDFNSKID 395


>gi|298388014|ref|ZP_06997561.1| integrase [Bacteroides sp. 1_1_14]
 gi|298259194|gb|EFI02071.1| integrase [Bacteroides sp. 1_1_14]
          Length = 342

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 106/288 (36%), Gaps = 27/288 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSL 88
             S+ T   Y    +    ++    E K     +++L+   +  F    RT++     S+
Sbjct: 59  NRSEGTYSKYCTVYKHMENYI--RQEYKRDDIFLKELNLAFVNGFEHYLRTERNCSTNSI 116

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
              + G+K  +   +       +     + + ++ +     L++++   LV+  + +  +
Sbjct: 117 WMYMIGVKHIVTIARNSGQLAINPFAGYLISPEQKDR--GFLSKEELNLLVNAKMKNAQY 174

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRIQGKGDKIRIVPLLP 204
           E          +      CGL  S+  +LT  N     D    +  + +         L 
Sbjct: 175 ELV------RDLFVFSCFCGLSYSDVKNLTKDNLQTSFDGHLWIITRRQKTNTDSSVRLL 228

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            V K I+E Y     D   N   P+        +        ++++ +  G+    T H 
Sbjct: 229 EVPKRIIEKYKGYTRD---NRIFPVPSNTSCNSI--------LKKIAKQCGIKARLTYHV 277

Query: 265 LRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            RH+F T L +S G  + ++  ++GH  + TTQIY  +  +     M 
Sbjct: 278 ARHTFGTLLTISQGVPIETVSRMMGHTNIKTTQIYAKITKEKISQDME 325


>gi|314938444|ref|ZP_07845733.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
 gi|314942723|ref|ZP_07849548.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|314952531|ref|ZP_07855530.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|314994043|ref|ZP_07859368.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|314997944|ref|ZP_07862841.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313588052|gb|EFR66897.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313591527|gb|EFR70372.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|313595365|gb|EFR74210.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|313598534|gb|EFR77379.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|313642211|gb|EFS06791.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
          Length = 443

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 75/237 (31%), Gaps = 36/237 (15%)

Query: 99  LKYLKKRKITTESNILNMRNLK-----KSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
             Y    +I T + +  +   +       +       +++ +  ++ +            
Sbjct: 194 FDYAASLQIITSNPMKLVSIPRGEALDIEDKNIEFYTKEELIEFLEAIRNDDDER----- 248

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------------GDKI 197
                   LL   G+R  EA +LT  +I     TL I                       
Sbjct: 249 ---YLFFSLLAFTGIRKGEAFALTWSDIDFKSKTLNINKTVTRGYQGRLIVNTPKSKSGK 305

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG---IRGKPLNPGVFQRYIRQLRRYL 254
           R + L   +   + +YY      + +  +  +F     +    ++        +      
Sbjct: 306 RKIYLDNDLISLLRKYYTKNKTIVTIQSENLIFHHDGLLYNPTVSRSWLNVIYKHHPE-- 363

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWM 310
            L    T H  RH+ A+ L  +G  L+ +Q  LGH  + TT  IYT+V        +
Sbjct: 364 -LTKRITTHGFRHTHASLLFESGASLKDVQERLGHADIQTTSNIYTHVTETQNKKVI 419


>gi|268611812|ref|ZP_06145539.1| phage integrase family site specific recombinase [Ruminococcus
           flavefaciens FD-1]
          Length = 366

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/273 (20%), Positives = 105/273 (38%), Gaps = 30/273 (10%)

Query: 46  FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-------IGDRSLKRSLSGIKSF 98
           +   L  +    +  + I  L+   I  FI  + T         +  ++++  ++  +S 
Sbjct: 89  YENILNNHILPILGGEYISSLTTGRINDFIHYKLTNGRLKGQGGLSAKTVRDIMTVYRSV 148

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
            +Y+ +     E+N       K  +     LN ++   L   ++       K +D  N A
Sbjct: 149 ERYVYREYGIRETNFT---MPKTESGNADVLNCEERKKLESYLI-------KNMDRTNLA 198

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---------QGKGDKIRIVPLLPSVRKA 209
           +L  L+  GLRI E   L  ++I  +++TL +          GK   I   P   +  + 
Sbjct: 199 VLLCLF-TGLRIGELCGLKWEDIDFEKNTLSVKRTVQRVSRNGKSQVIIGSPKSRTSIRT 257

Query: 210 ILEYYDLCPFDLNLNIQLPLFR-GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           +     +            LF      KP  P   Q   + + +  G+  +   H+LRH+
Sbjct: 258 VPIPIFMMALLRKFRSIDSLFVITNLSKPTEPRTMQNRFKAILKLCGI-RNVNFHSLRHT 316

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTT-QIYTN 300
           +AT  +  G D +++  +LGH   S T   Y +
Sbjct: 317 YATVCIEKGFDPKALSELLGHADASITLNRYVH 349


>gi|189467021|ref|ZP_03015806.1| hypothetical protein BACINT_03403 [Bacteroides intestinalis DSM
           17393]
 gi|189435285|gb|EDV04270.1| hypothetical protein BACINT_03403 [Bacteroides intestinalis DSM
           17393]
          Length = 410

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/289 (18%), Positives = 108/289 (37%), Gaps = 24/289 (8%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEE-KITIQTIRQLSYTEIRAFISKRRTQKIG-DRSLKRS 91
            +L+SY      +     F  +  K++   +++L+   I  F    RT+K   + ++   
Sbjct: 128 KSLRSYWKYCIVYKHLEEFIKQRYKVSDIALKELAPAFITDFELFLRTEKNHCNNTVWSY 187

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           +   +S +                  ++ K  +    L++++   L+           K 
Sbjct: 188 MMPFRSIIFMAINNGWLQRDPFYAY-SITKEETKRGFLSKEEINLLIKGTF------KKP 240

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
                  +       GL  ++  +LT +N     D    ++   +         L  V K
Sbjct: 241 SYTLIRDLFIFCTFTGLSWTDMANLTKENLQTSFDGHLWIKTNRQKTGTESNIRLLDVAK 300

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            I+E YD    D N  + +P +   +            I+ + +  G+  + T H  RH+
Sbjct: 301 HIIEKYD-GMTDDNKLLPVPCYVNCKNS----------IKVIAKKCGIEKNVTWHMSRHT 349

Query: 269 FATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +AT   LSN   + ++  +LGH  + TTQIY  + ++     M ++  Q
Sbjct: 350 YATTVCLSNDVPIETLSKMLGHRSIRTTQIYAKITAEKVSRDMEKLSKQ 398


>gi|60680662|ref|YP_210806.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
 gi|60492096|emb|CAH06859.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
          Length = 371

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 63/310 (20%), Positives = 119/310 (38%), Gaps = 38/310 (12%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           F+  K + ++L+     + L K   +          +    +   K T + I      + 
Sbjct: 86  FDKYKLKADFLEYYR--KQLRKHDQKW-----EFVYLHFNNFVHGKCTFEEIDIDLCNKF 138

Query: 72  RAFISK----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
           R ++      RR  +I   S     S  + FLK L +  +   +    +  ++  + +  
Sbjct: 139 REYLLSAKKLRRNGRITRNSASGYWSTFRGFLKILYRNGMIKTNVNDFLEKIETEDVMKE 198

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD---- 183
           AL+ ++   L +        +T         +   +    LRIS+ LSL  ++I+D    
Sbjct: 199 ALSVEELYKLAETPCKKPILKTAS-------LFSCM--TSLRISDILSLCWEDIVDYSAG 249

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
            +    I  K     I+P+       I           +   +  +F+G     L     
Sbjct: 250 GKCVHIITQKNKAEDIIPISEEALGLI---------GYSSEKKGLVFKG-----LMRSWT 295

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           Q  +++  R  G+  + T H+ R +FAT   + G D+R+IQSI+ H  ++TTQ Y  V  
Sbjct: 296 QIPMKEWIRSAGITKNITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVD 355

Query: 304 KNGGDWMMEI 313
            N  +   +I
Sbjct: 356 ANKREASKKI 365


>gi|320455|pir||S31463 probable integrase/recombinase [similarity] - Bacteroides sp.
           transposon Tn4551
 gi|154970|gb|AAA27458.1| ORF-2 with homology to Tn21 tnpI gene; putative [Transposon Tn4551]
          Length = 282

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 107/254 (42%), Gaps = 29/254 (11%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           S ++ +    + + L ++R  S  ++ +Y+   R FL         K       ++    
Sbjct: 34  SMDVDRLILEFERKLVLQR-YSANSIANYKSSARSFLDLA------KRKFSHPAEIDELA 86

Query: 71  IRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           +  ++  +  + +IG    +  ++ I  F K +  R++     I ++   +++ +LP  L
Sbjct: 87  VEKYVLWKIERHRIGSSHQRMIVASIDKFYKSIYGRELK----IKHLYPSRRTFALPNCL 142

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           N  +   ++D             + ++  ++ +LYG GLR+SE ++L   +I   +  +R
Sbjct: 143 NIDEVKRIIDGTE----------NIKHRCMIKMLYGSGLRLSELINLEIADIDSARMLIR 192

Query: 190 I-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           I + KG+K R+V L  S+   +   Y L   D+       LF G  G P +    Q  ++
Sbjct: 193 IVKSKGNKDRVVTLPESILTDLRTCYILHKPDV------YLFEGQWGGPYSAKSVQMVVK 246

Query: 249 QLRRYLGLPLSTTA 262
                 G+    T 
Sbjct: 247 NAASRAGIRKRVTP 260


>gi|221215358|ref|ZP_03588323.1| phage integrase family protein [Burkholderia multivorans CGD1]
 gi|221164790|gb|EED97271.1| phage integrase family protein [Burkholderia multivorans CGD1]
          Length = 613

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 63/360 (17%), Positives = 118/360 (32%), Gaps = 82/360 (22%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-------------- 80
           T ++Y  +  + L++     E  + + +++       +AF++                  
Sbjct: 253 TQRAYRRELERLLLWA--VVERGVALSSMQVEDCEAYKAFLAAPSAAFSGPPASRASGRW 310

Query: 81  -----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK---------KSNSLP 126
                  +   S   ++  I++  ++L K +    +    + + K          S +LP
Sbjct: 311 RPFGPGGLSLESQLYAVRAIRAAFEWLVKVRYLAGNPWAAVVDPKPVKHAKRMQVSRALP 370

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE-------ALSLTPQ 179
             L  +    L D       H ++W  A   A+L L+   GLRI+E       AL L P 
Sbjct: 371 VDLWARTRAALADWSEGSGPHASRWRAA--RALLLLMGDAGLRIAEATAASRDALELHPA 428

Query: 180 N-IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIR 234
           +  +     LR+ GK  K R VPL  +   A+  ++     D +                
Sbjct: 429 DGEIPATWELRVIGKRRKERFVPLSGTCIDALRAHWRDRGMDFDAADGTGRSDVALIAPL 488

Query: 235 GKPLNPGVFQRYIRQ------LRRYLG-------------------LPL----------- 258
             P  P   +++ R         +  G                   L             
Sbjct: 489 VIPRTPRAREKFARNDDASNGAAQKTGTGYSVRGARGLAQWAVEQLLEKMPDLTEPERRR 548

Query: 259 --STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H  RH+F T  ++    L  +Q +LGH  L TT +Y     K     + + + +
Sbjct: 549 LVGVSPHAFRHTFGTQSVATDVPLDVVQQLLGHASLQTTSVYVTAEEKRRRAEIAKYHAR 608


>gi|210618117|ref|ZP_03291902.1| hypothetical protein CLONEX_04135 [Clostridium nexile DSM 1787]
 gi|210148979|gb|EEA79988.1| hypothetical protein CLONEX_04135 [Clostridium nexile DSM 1787]
          Length = 396

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/297 (16%), Positives = 109/297 (36%), Gaps = 36/297 (12%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           RQ+L  +     + + ++ I  +  ++ + +  +   +    +++      +K+      
Sbjct: 107 RQYL--MNALKNDPLGMRAIDTVKQSDAKEWAIRMSEKGYAYKTIDNYKRSLKASFYMAI 164

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           +     ++        K S+ L     +K  LT      L    ET  I ++    + LL
Sbjct: 165 QDDCIRKNPFE----FKLSDVLEDDTEQKVILTSEQEERLLAFMETDKIYSKYYDEVVLL 220

Query: 164 YGCGLRISEALSLTPQNIMDDQ---------------STLRIQGKGDKIRIVPLLPSVRK 208
              GLRISE   LT Q  M ++                 +      +  R +PL     +
Sbjct: 221 LETGLRISEFCGLTTQIDMQNRILNIDHQLLKDTEIGYYIETPKTKNGKRELPLTERAYQ 280

Query: 209 AILEYYDLC---PFDLNLNIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGLP 257
           A+             +       LF    G P        +  G+ ++Y +  +  L   
Sbjct: 281 ALQRILKNRGKAQPLIVGGYSNFLFLNREGLPKVAGNYVGMLRGLIKKYNKYHKDKL--- 337

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
            + T H+LRH++ T++ + G +  ++Q ++GH  ++ T   Y +   ++    +  +
Sbjct: 338 PNITPHSLRHTYCTNMANKGMNPNTLQYLMGHANITMTLGYYAHGTFQSAKAELERL 394


>gi|308183658|ref|YP_003927785.1| integrase/recombinase (xerD) [Helicobacter pylori PeCan4]
 gi|308065843|gb|ADO07735.1| integrase/recombinase (xerD) [Helicobacter pylori PeCan4]
          Length = 355

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 67/279 (24%), Positives = 117/279 (41%), Gaps = 16/279 (5%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           K T+        Q L     Y  + + +++ R LS  ++  F+ +   Q     S+ + +
Sbjct: 69  KHTI------MMQGLFLFFEYFRDNLKLRSFRMLSEEQVINFLFEL-AQNRKPSSMAKYV 121

Query: 93  SGIKSFLKYLKKRKITTESNIL-NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
             ++ F  YL ++K       L N+   K   SLPR LN K   + +  +L +    T  
Sbjct: 122 MYLRQFFDYLDRKKHYNFDFALKNLAFAKTKESLPRHLNYKDLKSFLKTLLEYKP--TTS 179

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKA 209
            + RN  +L ++   GLR  E L++  ++I  ++   ++ IQGKG K R   +  S+ + 
Sbjct: 180 FEKRNKCVLLIVMLGGLRKCEVLNIELKHIQVEEQNYSILIQGKGRKERKAYIKKSLLEP 239

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL----STTAHTL 265
            L  +    + L       LF+  + K  N      +I  + +   +       T  H  
Sbjct: 240 SLNAWLSDDYRLKYFNGAYLFKKDKQKSQNSLTLYNFIPLIFKLAQIKHYKQYGTGLHLF 299

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           RHSFAT +     DL      LGH  L +T+I  +   +
Sbjct: 300 RHSFATLIYQETQDLVLTSRALGHSSLLSTKIDIHTTQE 338


>gi|300772355|ref|ZP_07082225.1| integrase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300760658|gb|EFK57484.1| integrase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 413

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 59/293 (20%), Positives = 117/293 (39%), Gaps = 26/293 (8%)

Query: 31  LSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFIS----KRRTQKIGD 85
           L+  T+++Y         F+   Y ++ I +  +      +   F++    K   + I +
Sbjct: 129 LAPGTMKNYYTTETYIQKFIKQKYGKKDIPLDELNYRFILDFENFLNDYKPKDHHKPINN 188

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
             + + +  ++  +                 + L+        L++++       VLL+ 
Sbjct: 189 NGVMKHMERLRKMVNLAVTMDWLVRDPFAKYK-LRFEKVERGHLSKEEL-----TVLLNK 242

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----MDDQSTLRIQGKGDKIRIVP 201
           S   + + + +   ++  Y  GL   +  +LTP+NI             + K D    VP
Sbjct: 243 SFSIERLQSVSDMFIFSCY-TGLAYIDIFNLTPENISKGIDGKDWLTTKRQKTDTTVRVP 301

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           LLP     + +Y      + N      +F  I  + +N      Y++++    G+  + T
Sbjct: 302 LLPEASDLLKKYRGHPVAEANGT----IFPVISNQRMNG-----YLKEIAEICGINKNLT 352

Query: 262 AHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            H  RH+FAT + LSNG  + S+  +LGH  + TTQIY  V      + M ++
Sbjct: 353 FHLARHTFATTVTLSNGVPIESVSKMLGHTSIRTTQIYAKVLEHKLSEDMHKL 405


>gi|282878603|ref|ZP_06287379.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281299274|gb|EFA91667.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 423

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 58/315 (18%), Positives = 128/315 (40%), Gaps = 32/315 (10%)

Query: 14  LLKERQNWLQ--NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR--QLSYT 69
           LL+E + +++  +  +E  ++K T  +Y   T+     +  Y  E++ ++ IR  QL Y 
Sbjct: 110 LLEEARLFIEEKHPCVEVTVAKPTFANYIYATQ----LIEAYLRERLGLEDIRYSQLDYG 165

Query: 70  EIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            I       ++++ +   +++  +  ++  +   +++K       ++ +  +  +   R 
Sbjct: 166 FIEGMDFYLKSERSLSLATIQIVVIFLRKLIGIGQQKKYIRIDPFVDYKA-ELPHRTRRY 224

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQ 185
           L  ++   ++   ++    E          +       GL   +   L  ++I+   D  
Sbjct: 225 LTTEELQRVLQTPIIDRQFERA------RQLFLFCAFTGLARVDMQRLRLKHIIRNADGT 278

Query: 186 STLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
             +RI + K D   I+PLLP  ++ +  Y        +  +   +F       L      
Sbjct: 279 EEIRIKRQKTDVEAIIPLLPIAKQILSLYI------KDKKVDDLIFPN-----LTTRKAS 327

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
                + +   +    T H  RH+F+T   LSNG  + ++  +LGH  + TTQIY  +  
Sbjct: 328 LACVNIGQICRIEKGLTFHMARHTFSTTICLSNGISMETLSKMLGHSNIDTTQIYGKITD 387

Query: 304 KNGGDWMMEIYDQTH 318
               + M  + D+ H
Sbjct: 388 HKIQEDMTALTDREH 402


>gi|224373197|ref|YP_002607569.1| phage integrase [Nautilia profundicola AmH]
 gi|223589506|gb|ACM93242.1| phage integrase [Nautilia profundicola AmH]
          Length = 301

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/301 (16%), Positives = 108/301 (35%), Gaps = 21/301 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + +  EI +     T+ S     R    +   +   K     I    Y + + F+++ 
Sbjct: 15  ELFAEYCEIMK----HTMTS--HTLRTKQSYYKTHFGHKYGHIIITDFKYKDAQLFVNEL 68

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +  +++K  +   K   KY    +   ++    ++  K  N +     +++    +
Sbjct: 69  LDKGLQPKTVKNIVDIFKVLYKYAIMNEYCEKNPFEFVQLPKFDNRIYFNFTDEEIKRFI 128

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
              +        + + +   I   L   G R++E LSLT  +I  +     I  K +K  
Sbjct: 129 YTAI-------NFPNVKFRGIFTFLLH-GRRLNEVLSLTWDHIDFENKQYFIPPKINK-- 178

Query: 199 IVPLLPSVRKAILEYYDLCPF---DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
              L+      ILE   L      D+       +F             ++  ++L +Y  
Sbjct: 179 AKKLMSYQMTDILEDILLRQKIINDVECPRSEYVFPSSVTCQ-KIKDIRKQFKKLLQYAN 237

Query: 256 LPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           +      H +RH  A++ +++ G  +  +   LGH  +  TQ Y N  ++        I 
Sbjct: 238 INKKMRIHDIRHLVASYAINSLGLSVEEVSYTLGHTSIEITQRYINPRAEISKRVAERIL 297

Query: 315 D 315
           +
Sbjct: 298 N 298


>gi|212702736|ref|ZP_03310864.1| hypothetical protein DESPIG_00764 [Desulfovibrio piger ATCC 29098]
 gi|212673793|gb|EEB34276.1| hypothetical protein DESPIG_00764 [Desulfovibrio piger ATCC 29098]
          Length = 350

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 93/253 (36%), Gaps = 17/253 (6%)

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           R L+  ++ AF   +  +++G  +++  L  ++S L++         + +  M+  +  +
Sbjct: 105 RMLTMQDVLAFREAQALRQVGLSTVRLRLGILRSALRWAVTTGRLAANPLDGMKLPRVRS 164

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI--SEALSLTPQNI 181
                    +   +++    H              I+ +   CG RI  SE   L   ++
Sbjct: 165 RRASPPTAAEGRKMMEVAAPHI-----------RRIIAIGMYCGPRIGPSELFRLRWADV 213

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
             D + L +               +R  ++        D +  I  P      G+P+   
Sbjct: 214 DLDAAQLNMPSASKADGPDGRFVPLRGDLVA-LMRRWQDEDSAIGCPWVIHYHGRPV--K 270

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST-TQIYTN 300
                    RR  G+      ++LRH+F T  L +G D+ S+  I+GH   S   + Y +
Sbjct: 271 SVGAAWHSARRAAGIQRRIVPYSLRHAFPTMALEHGADIGSLAEIMGHTSKSMILEHYQH 330

Query: 301 VNSKNGGDWMMEI 313
           V +    D +  +
Sbjct: 331 VTAHLKRDAVQRL 343


>gi|23466323|ref|NP_696926.1| phage family integrase [Bifidobacterium longum NCC2705]
 gi|317481754|ref|ZP_07940784.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689710|ref|YP_004209444.1| phage integrase [Bifidobacterium longum subsp. infantis 157F]
 gi|23327078|gb|AAN25562.1| phage family integrase [Bifidobacterium longum NCC2705]
 gi|316916802|gb|EFV38194.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320461046|dbj|BAJ71666.1| phage integrase [Bifidobacterium longum subsp. infantis 157F]
          Length = 309

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 83/213 (38%), Gaps = 22/213 (10%)

Query: 103 KKRKITTESNILN--MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
               +          ++  +      + LN+ +   ++ ++ L       W       ++
Sbjct: 91  VDEGLIQRDPTRKAIIKGKQPRQKKTKYLNQFELHAVLADLKLDPIPNWDW-------LI 143

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY-- 213
            L+   GLR SEAL LTP +      TL +    +       +P     SVRK  L++  
Sbjct: 144 LLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWNYKNGGGFVPTKNASSVRKVQLDWQL 203

Query: 214 -YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
              L     NL    P+F   +            + +  +  G+P+  + H LRH+ A+ 
Sbjct: 204 IMQLSVLLKNLPDDKPIFVNGKVYNSTANGI---LARHCKQAGVPV-ISIHGLRHTHASL 259

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           LL  G  + S+   LGH  ++TTQ  Y +V  +
Sbjct: 260 LLFAGVSIASVSKRLGHASMNTTQETYLHVIRE 292


>gi|325568568|ref|ZP_08144861.1| bacteriophage integrase [Enterococcus casseliflavus ATCC 12755]
 gi|325157606|gb|EGC69762.1| bacteriophage integrase [Enterococcus casseliflavus ATCC 12755]
          Length = 408

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 84/244 (34%), Gaps = 27/244 (11%)

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R ++      KY +       + +  +     + S+    +E   +   +   L +  + 
Sbjct: 140 RYINYAGMIFKYAESIGEIPSNPMQKIILPTPAESIEG--DESDVINFCNRQELLSLLKE 197

Query: 150 KWIDARNS--AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK-------------- 193
              +          LL   GLR  EAL+LT ++I     TL +                 
Sbjct: 198 LKENYPFKRFVFFSLLAYTGLRKGEALALTWRDIDFKHQTLTVNKTLAVGKNGTSLIQKP 257

Query: 194 --GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP------LFRGIRGKPLNPGVFQR 245
                +R + +       + E+       ++    +P        +      +NP   Q 
Sbjct: 258 KTKAGVRTISIDSDTADLLKEWRKHQKKHIDSLAMMPSIEQLVFAKDEDNGLMNPRTPQT 317

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           ++  L R        T H  RH+ A+ L   G  ++ +Q+ LGH  + TT  +YT+V  +
Sbjct: 318 WLDTLYRKNKSLHQITPHGFRHTHASLLFEAGASMKQVQARLGHSNIKTTMNVYTHVTKE 377

Query: 305 NGGD 308
              +
Sbjct: 378 GKEE 381


>gi|254993148|ref|ZP_05275338.1| integrase [Listeria monocytogenes FSL J2-064]
          Length = 384

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 114/292 (39%), Gaps = 37/292 (12%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T+  Y+    QF+ +     +EKI + +I  + Y   + FI+          ++   
Sbjct: 76  SQSTINLYDLAYNQFVDYF----DEKIKLNSIDAVQY---QQFINHLSVD-YAISTVDTR 127

Query: 92  LSGIKSFLKYLKKRKITTESNIL--NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
              I++            ++  +  ++     + +  + +   +   L++        E 
Sbjct: 128 HRKIRAIFNKAVHLGYMKKNPAIGAHISGHDVAKTKAQFMETDKVHLLLE--------EL 179

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-------------KGDK 196
               + + A+++L    G+R  E ++LT ++I   + ++ +               K  K
Sbjct: 180 AKFHSVSRAVIFLAVQTGMRFEEIIALTKKDINFTKRSITVNKAWDYKYTNTFIDTKTKK 239

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLN----LNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
            R++ +  S  + +  Y       +      N  + LF     KP++     + ++++  
Sbjct: 240 SRVIYIDNSTVQYLQSYLTWHTAYIKEHDIKNPLMLLFITYHNKPIDNASCNKALKKICN 299

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
            +      T H LRH+     +  G D+  +   LGH  ++TT + Y++++S
Sbjct: 300 TIN-SEPVTLHKLRHTHTGLCVEAGMDIIYVADRLGHDDINTTLKYYSHLSS 350


>gi|158340931|ref|YP_001522098.1| phage integrase family protein [Acaryochloris marina MBIC11017]
 gi|158311172|gb|ABW32784.1| phage integrase family protein [Acaryochloris marina MBIC11017]
          Length = 205

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 73/183 (39%), Gaps = 12/183 (6%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             L   +   L+    L   H  +     + A+L L++  GLR+SEA+SL    +M +  
Sbjct: 30  EYLTLAEVNRLIMAAELRGRHPIR-----DKALLLLMFRHGLRVSEAISLRWDAVMLELK 84

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            + I   KG      PL     +++ +       D        LF G RG  L       
Sbjct: 85  AIGITRLKGSVSGTHPLQADEVESLRDLRAEGYPD------PYLFVGERGGHLKRHAVTS 138

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            I +      L +    H LRHS   HL + G D R IQ  LGH  +  T  YT +N K 
Sbjct: 139 LINRCAELAQLGIKCHPHMLRHSCGYHLANQGLDTRLIQDWLGHRNIQHTVTYTMLNPKR 198

Query: 306 GGD 308
            G+
Sbjct: 199 FGE 201


>gi|8118216|gb|AAF72940.1|AF231133_1 INTI1 [Pseudomonas aeruginosa]
          Length = 182

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 85/201 (42%), Gaps = 28/201 (13%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +      + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQETGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ-GKGDKIRIVPLLP 204
             T+ ++ GKG K R + L  
Sbjct: 162 HGTIIVREGKGSKDRALMLPE 182


>gi|301299429|ref|ZP_07205708.1| putative toxin-antitoxin system, toxin component, PIN family
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852965|gb|EFK80570.1| putative toxin-antitoxin system, toxin component, PIN family
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 384

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 96/261 (36%), Gaps = 39/261 (14%)

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR------ALNEKQALTLVD 139
           ++    ++  +  L Y K  K    + + ++   KK  +L           ++Q    + 
Sbjct: 131 KNYNNVINITRQILDYAKIMKQIKTNPMNDVIVPKKRKTLDDTDNQVNFYTKEQLKVFLG 190

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--------- 190
            +  HT+++          +  +L   G+R  E  +L   +I  +  T+ I         
Sbjct: 191 ALKKHTTYQM-------YVVFRVLAFTGMRKGELAALKWSDIDFNNETITIDKTVAIDSN 243

Query: 191 -------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL------NIQLPLFRGIRGKP 237
                        IR + +  +   A+  + +    +L             +F    G  
Sbjct: 244 GGLHIQAPKTRKSIRTISVDDTTLNALRTWKNELRKELFKQGKNIDKGDGFIFHRNNGNF 303

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ- 296
           +N  + Q     LR+Y  LP     H  RH+ A+ L  +G  ++ +Q  LGH  + TT  
Sbjct: 304 INKYIDQFLPSFLRKY-NLPQ-IKPHGFRHTHASLLFESGASIKEVQDRLGHENIKTTMD 361

Query: 297 IYTNVNSKNGGDWMMEIYDQT 317
           IYT+V  K+  +   E + + 
Sbjct: 362 IYTHVT-KSAREKTAEKFAKY 381


>gi|215408032|emb|CAS02343.1| integron integrase [uncultured bacterium]
          Length = 138

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 50/94 (53%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 45  RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 104

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 105 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 138


>gi|167841613|ref|ZP_02468297.1| integrase family protein [Burkholderia thailandensis MSMB43]
          Length = 739

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 59/265 (22%), Positives = 100/265 (37%), Gaps = 30/265 (11%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK------KSNSLPRALNEKQALT 136
           + +RS   +   + +   +L  ++    +    +             +L RA  +    T
Sbjct: 347 LSERSRDTARRILNAMGAWLVGQQYLRVNPFAGLPAAPAVALDTTGRTLTRAQWQYVLQT 406

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT--------PQNIMDDQSTL 188
           +   V    +   +   AR++  L   Y  GLR +E  + T            +DD  +L
Sbjct: 407 VFRPVSAFDAAGEQAATARDAFGLLFAYATGLRRAELAAATTGALTRTALDGALDDAWSL 466

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN---IQLPLFRG-IRGKPLNPGVFQ 244
           R+ GKG + R VP+   +  A+       P  L L       PL    + G+ L+P V  
Sbjct: 467 RVLGKGRRARTVPMPRRLIDALRAQLRTRPVPLTLETAPADTPLIAHLVTGEALHPDVVG 526

Query: 245 RYIRQLRRYLGLP------------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           R  + +                      + H LRH+FA H L  G DLR +Q +LGH  L
Sbjct: 527 RLFKGIFARAADQLATTYPNAAADLRRASTHWLRHTFANHGLDAGADLRDMQELLGHASL 586

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQT 317
           +TT  YT  ++      +   ++  
Sbjct: 587 ATTTRYTKADAARQFQSVEAFFNAA 611


>gi|110644753|ref|YP_672483.1| tyrosine recombinase [Escherichia coli 536]
 gi|1816485|emb|CAA71839.1| FimB recombinase [Escherichia coli]
 gi|110346345|gb|ABG72582.1| type 1 fimbriae regulatory protein FimB [Escherichia coli 536]
          Length = 200

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 66/181 (36%), Gaps = 8/181 (4%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K  N     L   +  +L+       +  T    ARN  +  L +  G R SE   L   
Sbjct: 4   KADNKKRNFLTHSEIESLL------KAANTGPHAARNYCLTLLCFIHGFRASEICRLRIS 57

Query: 180 NIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           +I      + I   K       PLL    +A+  +  +     +   +  +F   +G PL
Sbjct: 58  DIDLKAKCIYIHRLKKGFSTTHPLLNKEIQALKNWLSIRTSYPHAESK-WVFLSRKGNPL 116

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +   F   I       GL L    H LRHS    L + G D R IQ  LGH  +  T  Y
Sbjct: 117 SRQQFYHIISTSGGNAGLSLEIHPHMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWY 176

Query: 299 T 299
           T
Sbjct: 177 T 177


>gi|312864175|ref|ZP_07724409.1| site-specific recombinase, phage integrase family [Streptococcus
           vestibularis F0396]
 gi|311100176|gb|EFQ58385.1| site-specific recombinase, phage integrase family [Streptococcus
           vestibularis F0396]
          Length = 388

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 87/241 (36%), Gaps = 23/241 (9%)

Query: 96  KSFLKYLKKRKITTESNILNMRNL----KKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           K  L+Y    ++   +   N+       K   +  +  N  +    +    L +   +K+
Sbjct: 148 KRILQYGVILQVIPTNPANNVVLPRNTQKDKKAKVKHFNNDELKQFL--TYLDSLDNSKY 205

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI------------RI 199
            +  +  +   L   G RI+EAL+L+  +I  D S + I    +              R 
Sbjct: 206 KNYYDITLYKFLLATGCRINEALALSWSDIDLDNSVVHITKTLNCDMKLNSPKSKAGYRD 265

Query: 200 VPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           + +       +  Y      +       +  +F        N       ++   +  G+ 
Sbjct: 266 IDIDQQTVTMLKRYQRKQTQEAWKLGRTETVVFSDFINAYPNYKAVAGRLKTHFKKAGVN 325

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQ 316
            +   H  RH+ A+ LL++G   + +Q  LGH  LS T   Y++++ +N        Y+Q
Sbjct: 326 -NIGFHGFRHTHASLLLNSGIPYKELQHRLGHSTLSMTMDTYSHLSKENAKKA-TSFYEQ 383

Query: 317 T 317
            
Sbjct: 384 A 384


>gi|265766721|ref|ZP_06094550.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263253098|gb|EEZ24574.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 415

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/274 (20%), Positives = 102/274 (37%), Gaps = 27/274 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K TL  Y    +    FL   Y  + I ++ +     ++   F+  R  +     ++  
Sbjct: 156 AKGTLLKYRTVYKHMQEFLDIRYHVKDIALKELTPAFISDFEMFL--RTDKHCCTNTVWL 213

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +  +++ +      +  T         +KK  +    L + +   L++  L +   E  
Sbjct: 214 YVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKDEIRLLMEGKLKNAKQE-- 270

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRI-QGKGDKIRIVPLLPSV 206
                   +       GL  ++  +LT +N     D+   + I + K   +  + LL   
Sbjct: 271 ----LYRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRQKTGVVSNIRLLDIA 326

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            + I +Y  LC           +F          G     IR + +  G+    T H  R
Sbjct: 327 NRIIGKYRGLC-------GDGRIFPVPHYNTCLAG-----IRAVAKRCGITKHITWHQSR 374

Query: 267 HSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYT 299
           H+ AT   LSNG  + ++ S+LGH  + TTQIY 
Sbjct: 375 HTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYA 408


>gi|284801561|ref|YP_003413426.1| hypothetical protein LM5578_1314 [Listeria monocytogenes 08-5578]
 gi|284994703|ref|YP_003416471.1| hypothetical protein LM5923_1267 [Listeria monocytogenes 08-5923]
 gi|284057123|gb|ADB68064.1| hypothetical protein LM5578_1314 [Listeria monocytogenes 08-5578]
 gi|284060170|gb|ADB71109.1| hypothetical protein LM5923_1267 [Listeria monocytogenes 08-5923]
          Length = 384

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/292 (16%), Positives = 115/292 (39%), Gaps = 37/292 (12%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T+  Y+    QF+ +     +EKI + +I  + Y   + FI+          ++   
Sbjct: 76  SQSTINLYDLAYNQFVDYF----DEKIKLNSIDAVQY---QQFINHLSVD-YAISTVDTR 127

Query: 92  LSGIKSFLKYLKKRKITTESNIL--NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
              I++            ++  +  ++     + +  + +   +   L++        E 
Sbjct: 128 HRKIRAIFNKAVHLGYMKKNPAIGAHISGQDVAKTKAQFMETDKVHLLLE--------EL 179

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-------------KGDK 196
               + + A+++L    G+R  E ++LT ++I   + ++ +               K  K
Sbjct: 180 AKFHSVSRAVIFLAVQTGMRFEEIIALTKKDINFTKQSISVNKAWDYKYTNTFTDTKTKK 239

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLN----LNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
            R++ +  S  + +  Y       +      N Q+ LF     KP++     + ++++  
Sbjct: 240 SRVIYIDNSTVQYLQSYLAWHSAYIKEYGIKNPQMLLFITYHNKPVDNASCNKALKKICS 299

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
            +      T H LRH+     +  G D+  +   LGH  ++TT + Y++++S
Sbjct: 300 TIN-SEPVTLHKLRHTHTGLCVEAGMDIIYVADRLGHDDINTTLKYYSHLSS 350


>gi|256845727|ref|ZP_05551185.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           3_1_36A2]
 gi|256719286|gb|EEU32841.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           3_1_36A2]
          Length = 405

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/284 (18%), Positives = 104/284 (36%), Gaps = 39/284 (13%)

Query: 52  FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111
           ++  E   ++ I        + +  +   + I   ++      +    KY  + KI + +
Sbjct: 121 YFYRENKKLKEIEDFDIE--KYYYHELNYRNISPNTVLHYHYLLSLVFKYALRHKIISIN 178

Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
            + ++   KK   +    N ++   L+D  LL    E+ +     +A        GLR S
Sbjct: 179 PLDSVEKPKKKKYVAEVYNAEEINILLD--LLKREEESIYFGVLMAAYF------GLRRS 230

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKI--------------------RIVPLLPSVRKAIL 211
           E + L   +I  +++T+ I     +                     R   L   +++ +L
Sbjct: 231 EVIGLKWSSINFEENTITIMSTVKETNIDGKHILVCQDKTKSPAGLRSFSLPIEIKELLL 290

Query: 212 EYYDLCPFDLN-------LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           +  +    +         +  +  ++    GK L P        +  +   L      H 
Sbjct: 291 KIKEKQEENKKYLGKCYYMEDKEYIYVDDGGKRLRPNYLTTRFGKFLKKFNL-KHIRFHD 349

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGG 307
           LRHS AT L  N   ++ IQ+ LGH  + TT  IY ++ ++N  
Sbjct: 350 LRHSCATILYDNNAGIKEIQTYLGHSSVKTTMEIYVHLMNRNDK 393


>gi|213962954|ref|ZP_03391213.1| integrase [Capnocytophaga sputigena Capno]
 gi|213954295|gb|EEB65618.1| integrase [Capnocytophaga sputigena Capno]
          Length = 411

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/313 (17%), Positives = 108/313 (34%), Gaps = 31/313 (9%)

Query: 9   IVSFELLKERQNWLQN--LEIERG-LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           ++   LLK  + + ++  L +E+G  S  TL  YE        F+ +      +  + ++
Sbjct: 108 VMEDSLLKVYEKFKEDFALMVEKGVRSYSTLNKYENVYTHLSEFIQYKYRR--SDISFKE 165

Query: 66  LSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L+   I  F    +  K +   ++   +  +   ++    + I   +   N  +  +   
Sbjct: 166 LTEDFINDFDFYLKINKSLTHNTIWVYMMPLCKMVEIAIDKGIIYRNPFKNYISSMEEKD 225

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN---- 180
               L  ++  TL+       S E          +       G    +   L   +    
Sbjct: 226 R-GYLLREEVETLLQYHPKSASAELV------RDLFVFSCFTGFSYIDIKQLKKSHLQSF 278

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
              ++  ++ + K D    V LL    K I +Y               LF        + 
Sbjct: 279 FDGNKWLIKRRQKSDVPCNVRLLDIAEKIIEKY-------EGTTRTEALFPTP-----SN 326

Query: 241 GVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
                 IR++ +   +      + H  RH+F T  L+ G  L S+  ++GH  + TTQIY
Sbjct: 327 TNCNLLIRKMMKDCNIIREKPISFHWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIY 386

Query: 299 TNVNSKNGGDWMM 311
             + ++     M 
Sbjct: 387 AKITNEKISKDME 399


>gi|187935362|ref|YP_001884797.1| phage integrase family protein [Clostridium botulinum B str. Eklund
           17B]
 gi|187723515|gb|ACD24736.1| phage integrase family protein [Clostridium botulinum B str. Eklund
           17B]
          Length = 385

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/316 (17%), Positives = 119/316 (37%), Gaps = 39/316 (12%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + + + I    S  T  SY+         +  + +  + I  +++++ + ++  I+ +  
Sbjct: 72  FNEYVLINCKYS--TQVSYKR-------LIKNHLKPSLGIYQLKKITSSRLQELINLKYR 122

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  L      +    KY         E+ +  ++  K +  L    ++ + +TL D
Sbjct: 123 NGFSKNYLGNLYGVLSGAFKYAVYPSNFIKENPMTFVKMPKYNTKLINNPDDLKIITLED 182

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG------- 192
               +   +     +     L + +  GLR +E +SLT   I  +  TLR++        
Sbjct: 183 Y---NNILKRFPYGSNMYIPLQISFNTGLRAAEVMSLTWDCIDFENQTLRVEKILYRNEF 239

Query: 193 ---------KGDKIRIVPLLPSVRKAILEYYDLCPFDL-------NLNIQLPLFRGIRGK 236
                         R + +  ++   + +++     +          +    +     G+
Sbjct: 240 KKWVFGSPKTHSSYRTIKIGNTLLSLLKKFHKDQKENKLRYGPFYVKHDYDFVCLKENGE 299

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            L     +   + +   LG+      H+LRH+ AT LL  G +++ IQ  LGH +L+TT 
Sbjct: 300 LLTTDSLKYLSKVVNYELGIDFK--FHSLRHTHATMLLEAGANIKDIQQRLGHSKLATTM 357

Query: 297 -IYTNVNSKNGGDWMM 311
            +Y++V  K   D + 
Sbjct: 358 DVYSHVTKKMSQDSVR 373


>gi|153952355|ref|YP_001397994.1| hypothetical protein JJD26997_0872 [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939801|gb|ABS44542.1| hypothetical protein JJD26997_0872 [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 286

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 59/308 (19%), Positives = 110/308 (35%), Gaps = 45/308 (14%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L +  + +L++++     S  T   Y     +F+ +   Y +E      I  +  T + 
Sbjct: 11  DLERWIEAYLKHIQAL-SYSNNTFLLYRRILLEFVEYSLDYQDEMQ----INDIKTTFLV 65

Query: 73  AFISKRRTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-----KKS 122
            F++          K+  ++    L  + SF  ++            +M+ +     K  
Sbjct: 66  NFLNYLENNSKNGNKLSKKTKITYLRVLTSFFYFISDNNDDLFIFSFDMKKIRFRTEKAE 125

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             L   LNE + + L + +    + +  +   RNS ++ L+   GLRISEAL++   +  
Sbjct: 126 EKL-NYLNENEIIRLNNVLEKEKAKKEVYNSFRNSLLIKLMLYGGLRISEALNVKLCDFE 184

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           +    L                              F  N+     + +   GK LN   
Sbjct: 185 EVDDEL----------------------------EYFKENIQDSDYIMQTSTGKHLNRSN 216

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               +  +     +      H LRH+ A  L + G +L  IQ IL H  L+TT IY    
Sbjct: 217 AFLIVNNIYAKALISKK-GLHLLRHTLAMRLTAKGTNLVVIQKILRHANLNTTTIYAKAT 275

Query: 303 SKNGGDWM 310
           +      +
Sbjct: 276 NDTIKAAL 283


>gi|225685340|ref|YP_002729740.1| putative integrase/recombinase [Persephonella marina EX-H1]
 gi|225646760|gb|ACO04945.1| putative integrase/recombinase [Persephonella marina EX-H1]
          Length = 299

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/317 (17%), Positives = 133/317 (41%), Gaps = 32/317 (10%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +++  L  +  ++L  L+   GLS  ++++Y+     F I+   Y      +     L  
Sbjct: 3   VLNENLKDKINSYLNKLKKS-GLSDKSIETYKNLLNHFEIWAEDYGL----LLDNLVLME 57

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
           T+I  FI   +++ +   ++K  L+  K  +++   + +                 + R 
Sbjct: 58  TDIEKFIDYLKSKNLSPTTIKMVLNRTKELVEFAGGKWLAD-------------KRIYRK 104

Query: 129 LNEKQ-ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            ++ + A    +  L    +  K  +     +   LYG GLR+SEA+ L P +I++ ++ 
Sbjct: 105 RSQTESAKPYSELELKQIFNHLKITNKVYYYLTLTLYGFGLRVSEAVQLLPDDIIEKENQ 164

Query: 188 LRIQGK-------GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG---IRGKP 237
           + ++ +         +   + L    R   +++          +  L  +      +   
Sbjct: 165 IFVRVRPEISKFNKSREAPLILKGEYRDDFIDFIVKRKHPKLKDKTLFTYYNDVQKKIIT 224

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
           L+    + Y   L + LG+  + TAH  R ++ +++++ G    ++   +GH  ++TT +
Sbjct: 225 LDRHNVKSYFHLLSKDLGI--NITAHRFRDTYISYMVAKGIKPITVSKWVGHKDVNTTLK 282

Query: 297 IYTNVNSKNGGDWMMEI 313
            YT + +K+  + + +I
Sbjct: 283 YYTKLTTKDELEELQKI 299


>gi|154502234|ref|ZP_02039294.1| hypothetical protein RUMGNA_00044 [Ruminococcus gnavus ATCC 29149]
 gi|153797113|gb|EDN79533.1| hypothetical protein RUMGNA_00044 [Ruminococcus gnavus ATCC 29149]
          Length = 331

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/321 (17%), Positives = 121/321 (37%), Gaps = 30/321 (9%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQS---YECDTRQFLIFLAFYTEE---KITIQTIRQLSY 68
           LK+  +++ +   +R  S  T +    Y  D   ++I   +  ++   +I    I+ ++ 
Sbjct: 19  LKDIPDFISDF-FDRYKSAATKRVNWIYIRDMLNWMINNKYINKQSIAEINETDIQIITS 77

Query: 69  TEIRAFISKRRTQKIGDR----SLKRSLSGIKSFLKYLKKRKITTESNILNMRN--LKKS 122
             +  ++++ +   +G      S+    +   +F  YL++ K   ++ I ++     K  
Sbjct: 78  NNLIKYLNELKNGILGRTNSLDSINTKKNVFSAFWNYLRQNKYVDDNVISHIPGNLYKSE 137

Query: 123 NSLPRA--LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                     ++Q    + N  +   ++ ++   RN AI+ L+ G G+R  E +++   +
Sbjct: 138 KRYKEVEIPTDEQVEKFLVN--ITDGNKNEFNIIRNIAIVQLIKGSGIRSEELINMDISD 195

Query: 181 IMDDQS---TLRIQGKGDKIRIV--PLLPSVRKAILEYYDLCPFDLNLN--IQLPLFRGI 233
           +   +     + I GKG+        +    R  I EY  +  F +         LF   
Sbjct: 196 LHLHEEKRPYMMILGKGNIQEYDKVYMSEQARMNIEEYLKIRTFFVTEREIKDNALFLSN 255

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
               L+ G    +                H LRH   + L     D+  +Q  L H  L 
Sbjct: 256 ENNRLSKGAITGFFNLYSE-----GEIYPHMLRHWVGSKLYEETKDIVLVQRQLRHKNLE 310

Query: 294 TTQI-YTNVNSKNGGDWMMEI 313
           T    Y +++     D ++++
Sbjct: 311 TAARYYVHMDESTIADAVLDL 331


>gi|85373646|ref|YP_457708.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter litoralis HTCC2594]
 gi|84786729|gb|ABC62911.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter litoralis HTCC2594]
          Length = 398

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/275 (20%), Positives = 98/275 (35%), Gaps = 16/275 (5%)

Query: 41  CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLK 100
                   +   Y ++      I +L+   + ++ +       G  +  R+   +K  L 
Sbjct: 129 STLETHTGYRRRYLDDAFVGVYIDELNEGHVTSWFADLNNLT-GPGASNRTFEILKHMLN 187

Query: 101 YLKKRKITTES--NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
             +      E+     ++R   +     R L   +   L    L +           + A
Sbjct: 188 KAEDWGYRLENTNPCRSVR-PNRKRQCERFLTNDELARL-GAELTNLRASEDRTKQCSGA 245

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
            + LL   G R SE L+L   +I  ++  L ++      R V L  + R+ I        
Sbjct: 246 AITLLLLTGCRKSEILTLEWTDIKGNR--LHLRDSKTGPRTVWLGSAAREVI------AA 297

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
                 I  P +     KPL       + R+LR   GLP     H LRH+FA+H   N  
Sbjct: 298 LPRFERIPYPFWNYRYRKPL--RCVNGFWRRLRDEAGLP-DVRIHDLRHTFASHAAMNKE 354

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            L  I  +LGH  + TT  Y + +  +  +   +I
Sbjct: 355 TLPMIGRLLGHANVQTTARYAHFDDGHLLEAAQQI 389


>gi|312886963|ref|ZP_07746567.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311300275|gb|EFQ77340.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 411

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 58/286 (20%), Positives = 106/286 (37%), Gaps = 24/286 (8%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSLK 89
            +K T+  YE   +    F+ +    K   + I++L +  I  +    +T +K    S  
Sbjct: 129 FAKGTIGRYEISMQHTRDFIKWMY--KADDKPIKELDHEFISQYAFWLKTVRKCNHNSTM 186

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           + L+  K  +    K +        N +  KK+     AL E +   +++          
Sbjct: 187 KYLANFKKVVLICVKNRWLPGDPFANFKLTKKAVE-KVALTEAELKRVIEKKFDAERLSL 245

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNI----MDDQSTLRIQGKGDKIRIVPLLPS 205
                    I       GL  ++  +L   +I     D +     + K +    +PLL  
Sbjct: 246 V------RDIFVFSCYTGLAYADVKNLKRSDIKTGIDDKEWIFINRQKTNSASHLPLLAQ 299

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            RK +  Y D     +  +  LP+        L       Y++++    G+    T H  
Sbjct: 300 ARKILTRYRDHSKC-IETDAALPV--------LTNQKMNAYLKEIADTCGIKEELTFHIA 350

Query: 266 RHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           RH+FAT + L+NG  + S+  +LGH  +  TQ Y  + +      M
Sbjct: 351 RHTFATTVTLNNGVPMESVSKMLGHSSIRQTQHYAKMQNYKVSKDM 396


>gi|293393584|ref|ZP_06637894.1| phage integrase family site-specific recombinase [Serratia
           odorifera DSM 4582]
 gi|291423919|gb|EFE97138.1| phage integrase family site-specific recombinase [Serratia
           odorifera DSM 4582]
          Length = 335

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 97/251 (38%), Gaps = 36/251 (14%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR---SLSGIKSFLKYLKKRKITTESN 112
             +    + +LS   I     +R    I   ++ R     SG+  F   +K  +   E+ 
Sbjct: 100 RALGDPAVNRLSKRTIAQHRGQRLEDGISAATINRDVYRFSGM--FSTLIKLDEFRKENP 157

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
              +  LK++      L + +   L++            +   +  +  L    G R  E
Sbjct: 158 CKGLEPLKETPPAMTYLAKSEISRLLNT-----------LTGDDRRVALLCLSTGARWGE 206

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
           + +L  + +   + T  ++ K  K R VP+   +             ++  +   PLF  
Sbjct: 207 SSTLRGEQVNHGRVTF-LKTKNGKKRTVPISEEL-----------EGEIKTSDTGPLF-- 252

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                ++   F   ++Q+     LP     H LRH+FA+  + NGG++ ++Q ILGH  +
Sbjct: 253 ----KVDYENFCERLKQV--KPDLPRGQATHVLRHTFASWFMMNGGNIIALQQILGHASI 306

Query: 293 STTQIYTNVNS 303
             T +Y ++  
Sbjct: 307 QQTMVYAHLAP 317


>gi|224027002|ref|ZP_03645368.1| hypothetical protein BACCOPRO_03761 [Bacteroides coprophilus DSM
           18228]
 gi|224020238|gb|EEF78236.1| hypothetical protein BACCOPRO_03761 [Bacteroides coprophilus DSM
           18228]
          Length = 409

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 61/288 (21%), Positives = 115/288 (39%), Gaps = 25/288 (8%)

Query: 31  LSKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
             K TL +Y        +F+   Y  + +    + +L   E   F      + +   +++
Sbjct: 129 YKKGTLPNYHYTRLTLGLFVKKRYGTDDVAFGELDELFIREYMDF--CLDERGLALDTVR 186

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             L+ +K   +   K   +   + ++ +  +K  + P+AL  +  L + +   L      
Sbjct: 187 HYLAILKKTCRIAFKAGHSERYHFMHFKLPQKKENPPKALTREDFLKIRN---LEIPERR 243

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGDKI-RIVPLLPS 205
           K +       L+  Y  G   ++ +S+T +N+  D+     L+   K +K+   V LLP 
Sbjct: 244 KSLALTRDLFLFACY-TGTAYADTVSITEENLFRDEEGSLWLKYHRKKNKMLARVKLLPE 302

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
               + +Y D     L    +  + RG              ++ LR   G+ +    H  
Sbjct: 303 ALAMLEKYKDPTRPTLLPPQEFRVLRGN-------------MKSLRVLSGVSMDLVYHVG 349

Query: 266 RHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           RHSFA+ + L  G  + +I  +LGH  + TTQIY  V  K   + M +
Sbjct: 350 RHSFASLVTLEEGVPIETISRMLGHNNIQTTQIYARVTPKKLFEDMDK 397


>gi|213646621|ref|ZP_03376674.1| HbiF [Salmonella enterica subsp. enterica serovar Typhi str. J185]
          Length = 177

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 63/161 (39%), Gaps = 2/161 (1%)

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIR 198
             LL  +    + + RN  ++ + +  G R SE L L   +I      L I+  K     
Sbjct: 1   EKLLSATDRMPFPE-RNRCLILMAFIHGFRASELLGLRLSDIDLAGRQLYIRRLKNGFST 59

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
             PLLP     +  +     +         LF  +R  PL+   F   +R+  R   L +
Sbjct: 60  CHPLLPDEYNVLKSWLRARKYLEKGADGDWLFLSLRRHPLSRQQFFYILREAGRLAELTI 119

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           +   H LRH+    L   G D R IQ  LGH  +  T  YT
Sbjct: 120 APHPHMLRHACGYALADKGIDTRLIQDYLGHRNIQHTVRYT 160


>gi|158422452|ref|YP_001523744.1| phage integrase [Azorhizobium caulinodans ORS 571]
 gi|158329341|dbj|BAF86826.1| phage integrase [Azorhizobium caulinodans ORS 571]
          Length = 384

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/282 (17%), Positives = 96/282 (34%), Gaps = 22/282 (7%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  T++ Y                   +   I  +    I  F++ RR + + + +++R 
Sbjct: 99  SPRTVKRYADSL--------SIAGRHFSTLPIADIDKDAINRFVAARRAEGVTNATIRRD 150

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L  I S L + +       +  L+     K +  P  L +      V + L     E   
Sbjct: 151 LQAISSLLDFSEDEGWRDGNPALDKMRRLKEHRDPIMLPDDGDYAFVLSRLQEGHAE--- 207

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI- 210
                  +L      G+R  E      ++     S+L ++GKG+K R + L         
Sbjct: 208 -------MLRAARATGMRQDELARAERRHFNAANSSLLVRGKGNKQRTISLSAEAAAIFS 260

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            +   L    +  +   P+ +            Q+  ++             H +RH +A
Sbjct: 261 RQPVSLACPHIFHHAGKPITKAAFIFSRARRAAQKAAQKAGMEF---RGFRFHDMRHLYA 317

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L +GGD+ +++  L H  + TT++Y    +    +    
Sbjct: 318 VEFLRSGGDIYTLKEHLRHSSVKTTEMYLEFLTPEEAELAKR 359


>gi|146301442|ref|YP_001196033.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146155860|gb|ABQ06714.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 305

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 61/277 (22%), Positives = 115/277 (41%), Gaps = 33/277 (11%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-------KIGDRSLKRS 91
           Y+    +FLI+L     EK  I +IR+++  E  ++     ++        + ++++K  
Sbjct: 34  YQTAVSEFLIWL-----EKSGINSIRKVTGRESVSYYEHLISRPKHRGNGTLAEKTIKFH 88

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETK 150
           L  +  F+  L +     +     + +    +   R AL+ ++   L  +          
Sbjct: 89  LFALGLFVLNLLENNQIEK--AYYIPSYSGESGNSRNALSVEEIRMLYQHCENDLQ---- 142

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKA 209
                  A++   YGCGLR SE  +L  ++I   +  + ++ GKG K R VP+   V   
Sbjct: 143 ------RALISTAYGCGLRRSEIEALNTRDIQLSRGMVIVRDGKGSKRREVPMSDMVAGH 196

Query: 210 ILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG----LPLSTTA 262
           I +Y     ++        +   F    GK +N       ++++         +    T 
Sbjct: 197 IKKYIAEERYEKLKATNRTEDAFFIYDSGKRMNGEYLNSMLKKIVGQTSSYELIQKDITL 256

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           H LRHS A+HL+     +  I+  LGH +++TT IY 
Sbjct: 257 HCLRHSIASHLMEKNAGIDFIRGFLGHSQINTTYIYA 293


>gi|89147600|gb|ABD62659.1| integrase [uncultured bacterium]
          Length = 163

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/111 (33%), Positives = 51/111 (45%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +G G       L      A   +     F        P     R   L     QR + + 
Sbjct: 52  EGFGRVWMPDALEVKYPNANASWSWQWVFPAGKRSIDPRSGAERRHHLGEQAIQRAVHEA 111

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            R  G+  + T HTLRHSFATHLL +G D+R++Q ++GH  + TT IYT+V
Sbjct: 112 VRRSGIEKAATPHTLRHSFATHLLESGHDIRTVQELMGHADVKTTMIYTHV 162


>gi|327183268|gb|AEA31715.1| integrase [Lactobacillus amylovorus GRL 1118]
          Length = 383

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 87/252 (34%), Gaps = 35/252 (13%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA---LNEKQALTLVD 139
           +  ++ KR +      + Y    ++  ++ +  +   K      +     ++ +  T + 
Sbjct: 130 VAPKTFKRFVFYASKLINYGITMELMKKNPMKKVILPKIERDNKKFDNFYSKDELNTFL- 188

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG------- 192
                  ++ K  + R      LL   G+R  E L+L   +I    +T+ I         
Sbjct: 189 -------NDAKGYNFRYFMFFRLLAYSGMRKGECLALKWSDIDFKNNTIDINKSLASGEN 241

Query: 193 ---------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
                        +R + +       + E+      ++       L         + G +
Sbjct: 242 NRLYLSPCKTSSSVRTLDMDTETMHYLKEWRTKQQKEMLKLGLNFLSNDNLVFANSEGNY 301

Query: 244 ------QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ- 296
                 QR+   + +  GL      H  RH+ A+ L   G  ++ ++  LGH  ++TT  
Sbjct: 302 TVLSKPQRWDNAICKKFGL-RHIKVHGFRHTHASLLFDAGVSMKDVKERLGHSDITTTMN 360

Query: 297 IYTNVNSKNGGD 308
           IYT+V  K   +
Sbjct: 361 IYTHVTKKKAKE 372


>gi|228966946|ref|ZP_04127984.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228792680|gb|EEM40244.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 376

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 100/284 (35%), Gaps = 30/284 (10%)

Query: 41  CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLK 100
               Q+   L      +   + +  +    +  F  K   + +  + +      +K  L 
Sbjct: 81  STLYQYKRILRSRVMPEFGEKRLSDIKPLTVHNFHQKLLKEGLTTKYISSVDVMLKQILD 140

Query: 101 YLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
              + ++   +     +  K       +   ++A+  ++            I        
Sbjct: 141 KGVELEMINSNPAKKAKRPKVKKKAQASWTVEEAMKFMEY---------AKIQGSYYIAF 191

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---------------GKGDKIRIVPLLPS 205
            L    G+RI E L+L   +I  +  T+ +Q                     R++P+   
Sbjct: 192 VLALHTGMRIGEVLALQWDDINFENKTIHVQRTLTLVDGKYELGETKTEASNRMIPMTED 251

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           +  A+LEY +        N    L      K ++P   +  ++ L   + +P     H +
Sbjct: 252 LMGALLEYQNHR----KENSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPY-IRFHDI 306

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
           R +F T L+ +G + + +  +LGH  +STT  IYT+V  +   +
Sbjct: 307 RRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDVYEERQIE 350


>gi|227508549|ref|ZP_03938598.1| integrase [Lactobacillus brevis subsp. gravesensis ATCC 27305]
 gi|227191881|gb|EEI71948.1| integrase [Lactobacillus brevis subsp. gravesensis ATCC 27305]
          Length = 305

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/304 (21%), Positives = 127/304 (41%), Gaps = 33/304 (10%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L +  Q+W+ NL  +  + ++T + YE   RQ +          + +  + +L+Y ++ 
Sbjct: 6   KLHRYFQDWM-NLYKKDAVREVTYRKYEMTYRQIVS-----LAPDLRMCELSRLTYQKLL 59

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN--MRNLKKSNSLPRALN 130
              ++   ++    ++      IKS L    +  I          ++  K      + LN
Sbjct: 60  NDYAETHERQ----TVMDFHRHIKSSLIDALEEDILERDPTRKAIIKGKKPGPHKTKFLN 115

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           + +   ++D++ L            +  IL L+   GLR SEAL++TP +    + TL I
Sbjct: 116 QHEVQLMLDSLSLDAGVN------WDYFIL-LITKTGLRFSEALAVTPNDFDFARQTLNI 168

Query: 191 QGKGDKIRIV------PLLPSVRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPG 241
               D               S+RK  L++  +  F      L+   P+F   +       
Sbjct: 169 NKTWDYKSRQAGFAPTKNFSSMRKIQLDWQTVIQFSQLTKELSEDKPIFVRSKVY---ND 225

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI-YTN 300
               Y+ +L +  G+P+  + H LRH+ A+ LL  G  + S+   LGH  ++TTQ  Y +
Sbjct: 226 TINHYLERLCKKSGIPI-ISVHGLRHTHASLLLYAGVSIASVARRLGHSNMNTTQQTYLH 284

Query: 301 VNSK 304
           +  +
Sbjct: 285 IIQE 288


>gi|301167248|emb|CBW26830.1| putative tyrosine recombinase [Bacteriovorax marinus SJ]
          Length = 326

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/287 (19%), Positives = 109/287 (37%), Gaps = 19/287 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L + + N+   L+   G S+ TL++Y+ D   F  +L     E      I      E++ 
Sbjct: 12  LNELQNNFFSKLKAM-GRSQNTLKNYKTDLDCFNQYLIKNEGE----TDITHFGMPEVQH 66

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           +      +   D S +R +  ++ F  YL +  +   + +  +    K   +PR      
Sbjct: 67  YGQYLEKKYSSDNSRRRRVQALRIFFDYLVEENLFESNPVRKLPTSPKFLDIPRPTPFID 126

Query: 134 ALTLVDNVLLHTSHETKW---IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             TL  ++L   +   +    I  RN  ++ L+YG GL++S+   L   NI  +  T R+
Sbjct: 127 VKTLWVSLLEEATSNNEMNALIARRNQIVMLLIYGAGLKVSDLSKLKTSNIFLESETPRV 186

Query: 191 -----QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPG 241
                +     I +  +   V +  +          ++N    LF     +     L+P 
Sbjct: 187 LISHPKRDPYTIALPKIFTQVFEEYILKLSDMKIKSSINFDELLFNANPYRILSGSLSPR 246

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
             +    + R+ L +    T  +LR +     L    D  SI+  +G
Sbjct: 247 GLEVIFEEYRKKLQIT--LTPKSLRQACIFKWLHQEHDETSIKEWMG 291


>gi|301307882|ref|ZP_07213838.1| integrase [Bacteroides sp. 20_3]
 gi|300834225|gb|EFK64839.1| integrase [Bacteroides sp. 20_3]
          Length = 407

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/309 (15%), Positives = 108/309 (34%), Gaps = 25/309 (8%)

Query: 14  LLKERQNWLQNLEIERGLSKL----TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           LL   + +++N   E+ +       +L++Y         FL      K++      L  +
Sbjct: 109 LLGYFRRFIRN--FEKRVGINRTVGSLRAYSNAYSHIERFLQAQY--KLSDIPFSALDRS 164

Query: 70  EIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            I  +    RT++ +   ++      +K+ +       I T S  +      +   + + 
Sbjct: 165 FIDKYDLYLRTERNLAPGTIINLTVQLKTIVGEAIADGIITASPFMGYE-PVRPKHVQKY 223

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L  ++   ++   L    H       R+  +       G+   +   LT  N+   +  +
Sbjct: 224 LTAEELHRIMTTPL----HRQTLYHVRDMFLFSCF--TGIPYGDMRLLTKDNLCLAEDGI 277

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
                  +   +     +    L+           +  LP++               Y++
Sbjct: 278 WWIKSARQKTKIEFEIPLLDLPLQILKKYSGTAPGDKLLPMYCN--------STLNLYLK 329

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++ R   +      H  RH++AT + LS+G  L ++  +LGH ++ TTQIY  V  +   
Sbjct: 330 EIARICHIDRPLVFHAGRHTYATEITLSHGVPLETVSRMLGHSQIETTQIYAKVTDEKID 389

Query: 308 DWMMEIYDQ 316
                +  +
Sbjct: 390 ADTKALNRK 398


>gi|332521882|ref|ZP_08398330.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
 gi|332042484|gb|EGI78687.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
          Length = 431

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/291 (15%), Positives = 108/291 (37%), Gaps = 24/291 (8%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLS 93
           T +SY+ +  +F  F+               ++ T ++ + S   ++    + ++  +  
Sbjct: 149 TYRSYKNNIEKFERFVGHREIM------FDDITATTLKNYASHCSSKLGNNNTTINYAFR 202

Query: 94  GIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
            +    +  K   + +   +     + +KK+ +  R LNE+Q    ++   L    E K 
Sbjct: 203 ILNLMFREAKSEDLISNELAPFTKFK-VKKNKTTKRYLNEEQFDAFMN---LEVPQEHKA 258

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-RIQGKGDKIRIVPLLPSVRKAI 210
              ++  I  + +  GLR  + + L  +N       + +   K  +   + +       +
Sbjct: 259 QVIKDMFIFSV-FSGGLRFGDVIELQWKNYDSKNHRITKTIRKTKRQHSIKIGQKAVDIL 317

Query: 211 LEY------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVF---QRYIRQLRRYLGLPLSTT 261
            +Y       +   F      +L          +          Y+ ++ + L LP + +
Sbjct: 318 EKYKTKDQKQNDIIFPFAKVDELYFKDREHRSLITNRAISLSNMYLSRIGKELELPFNLS 377

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            H  RH+FAT  L+NG  +  +  ++ H  +  TQ+Y  +      + + +
Sbjct: 378 FHISRHTFATRALNNGMRIEHVSKLMDHSDIGITQVYAKIIGSELDNAVDK 428


>gi|125622936|ref|YP_001031419.1| phage integrase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124491744|emb|CAL96663.1| phage integrase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300069675|gb|ADJ59075.1| phage integrase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 394

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/313 (16%), Positives = 111/313 (35%), Gaps = 38/313 (12%)

Query: 30  GLSKLTLQSYECDTRQF-LIFLAFYTEEKITIQTIRQLSYTEIRAFI---------SKRR 79
           G+   T+Q  +     + L  L  Y  +K+    ++Q+    +  ++         +  R
Sbjct: 83  GVKPRTVQIMQTRLNNYVLPALGEYRIDKVNSIILQQI----VNQWMINASQPLNGAYHR 138

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS----NSLPRALNEKQAL 135
            +  G    K   + ++   K+     +  ++  +N+   K          + L  +Q  
Sbjct: 139 PKGKGKD-FKIYFNIVERIFKHALSLGLVKDNPCVNVIVPKVRLESTEKKVKYLTAEQLK 197

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG- 194
              +   +    + K+ +   + +  LL   GLRI EA++L+  +I     ++ +     
Sbjct: 198 IFFEY--IGALPKEKYTNELMTGLCRLLVASGLRIGEAVALSWSDIDFKTGSVSVSKTTL 255

Query: 195 -----------DKIRIVPLLPSVRKAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                         RIV +     + +  +          +    Q  +F    G  L+ 
Sbjct: 256 RAVIQSTPKTDKSNRIVLIDSKAVEVLKHWELFQAKYFMSIGKGKQELVFPNRTGGVLDY 315

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYT 299
              + ++ +  R   LP     H  RHS A+ LL+     + IQ  LGH  +  T   Y+
Sbjct: 316 QTMRPFLIKWLRACQLPQ-VGFHGFRHSHASLLLNADVPYKEIQERLGHASIKMTMDTYS 374

Query: 300 NVNSKNGGDWMME 312
           ++ S N    +  
Sbjct: 375 HLESDNKIKAVER 387


>gi|239906151|ref|YP_002952890.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239796015|dbj|BAH75004.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 347

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 58/319 (18%), Positives = 116/319 (36%), Gaps = 43/319 (13%)

Query: 7   PEIVSFELLKERQNWLQNL--------EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI 58
           PE +S E+    + +L  L        ++E G S  T         +   FL  +     
Sbjct: 56  PEAISEEVAVTGKLYLDQLAQMYINSRKVE-GTSIRT-------LNEIKSFLKRHLIPVF 107

Query: 59  TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
             + + ++ Y EI   I  +  +     +  R LS +K+  K+  +  +  ++ +     
Sbjct: 108 AQRPVEEIKYDEIVK-IVAKAYENRSPVTRGRYLSYLKTVFKFGVEHDLIEKNPLRQWHK 166

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI--SEALSL 176
            ++     + L       +               +   +  + + +  G+R   SE L+L
Sbjct: 167 PREKPRDTK-LTVDDLQQI-----------KAAAEPHLAWAIEVAWNLGVRTGPSELLAL 214

Query: 177 TPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           T  +I   + T+ +   K +  R VPL       + E       +  +        G   
Sbjct: 215 TWDDISWAEKTINVFATKTNTRRTVPLSDEFLARLQEKKATAQCERIVEYH-----GRPV 269

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           K ++     R +R   R  G+      + +RH FAT LL+ GGDL ++  ++GH  +  T
Sbjct: 270 KQIS-----RAMRTACRRAGITYPVVLYDVRHLFATTLLNEGGDLSAVSKLMGHSSIQMT 324

Query: 296 Q-IYTNVNSKNGGDWMMEI 313
              Y ++        +  +
Sbjct: 325 ANNYYHLLGDEKRRTIARL 343


>gi|238892790|ref|YP_002917524.1| recombinase involved in phase variation [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238545106|dbj|BAH61457.1| recombinase involved in phase variation [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 196

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 67/179 (37%), Gaps = 6/179 (3%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L  ++   ++       + +      R+  ++ + +  GLR+SE   +   +I     
Sbjct: 6   KHLTRQEVGQIL------LAADRGIHFERDYCLIQMCFLHGLRVSELCGMRLSDIDLVGR 59

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           ++ I+   + +     L       L  +              LF   +G PL+    +  
Sbjct: 60  SVYIRRLKNSLSTQHPLFDAELPALMRWLKVRRRWREADSDWLFLSQKGGPLSRHQVRLL 119

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +R+     G+ +    H LRH     L   G D R IQ  LGH  +  T IYT  N++ 
Sbjct: 120 LRRYGELGGISIPAYPHMLRHGCGYALADLGRDTRLIQDYLGHRNIRHTVIYTATNTQR 178


>gi|226349698|ref|YP_002776812.1| putative tyrosine recombinase [Rhodococcus opacus B4]
 gi|226245613|dbj|BAH55960.1| putative tyrosine recombinase [Rhodococcus opacus B4]
          Length = 390

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 65/359 (18%), Positives = 119/359 (33%), Gaps = 68/359 (18%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++     +L+ +   R  ++ T +SY      +L + A   ++        Q +  ++ +
Sbjct: 27  VMSVADAYLRYVRFGRDGAESTTKSYAGAVALYLSWCAATGQDW-------QAAAGKMPS 79

Query: 74  FISKRRTQK----------------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           F+   R                    G R +   L+G++ FL +           +  + 
Sbjct: 80  FVLWLRHSPSQPGGATAGGVGTIVVRGPRRINCVLAGVRGFLAFAVDHGDAPRGVLGQLY 139

Query: 118 NLKKSNSLP-RALNEKQALTLVDNVLLHTSHETKWID-ARNSAILYLLYGCGLR------ 169
            L  S  LP  A  E  A  L            +    A +  +L LL  C  R      
Sbjct: 140 ELADSQDLPAEARGEDGAWRLRMRARHRVPIVRQRPGRASDDDVLLLLRAC--RSARDRL 197

Query: 170 -----------ISEALSLTPQNIMD--------------DQSTLRIQG------KGDKIR 198
                        E + L  +++                    +R Q       K    R
Sbjct: 198 LMLLLALAGLRRGEVVGLRREDVHFLLDSSALGCSFPGSHLHVVRRQNINGAWAKSRHSR 257

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG----KPLNPGVFQRYIRQLRRYL 254
           IVP+   V +A  +Y               +F  +       P+ PG     +    R  
Sbjct: 258 IVPVDSLVVQAHDQYVAERATKAGAWESDFVFVNLFRAPIGAPMTPGAVNALLAAASRRA 317

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           GL  +   H LRH FA+++L  GG +  +Q +LGH  +S++Q+Y +   +     +  +
Sbjct: 318 GLDRAVHPHALRHGFASNVLDAGGSIDEVQELLGHASISSSQVYVHPAPERLRAAVERV 376


>gi|328957208|ref|YP_004374594.1| putative phage integrase [Carnobacterium sp. 17-4]
 gi|328673532|gb|AEB29578.1| putative phage integrase [Carnobacterium sp. 17-4]
          Length = 382

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/303 (18%), Positives = 103/303 (33%), Gaps = 39/303 (12%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           K T++  E    + L     +         + +++    +A ++    +    +++    
Sbjct: 81  KNTVK--ESTLNKTLELFNNHILPIFGDLYMDKITVVFCQAALNDWYKRLQKYKAISNYA 138

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALN--EKQALTLVDNVLLHTSHE 148
           S I     Y         +    +     K      + LN   K+ LTL  + L     E
Sbjct: 139 SRI---FDYAITISAVEINPFKKVSMPIRKVDVEEEKVLNFYNKEELTLFFDHL---KRE 192

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK--------------- 193
            K +     A+   L   G R  E L+L  ++I    +T++I                  
Sbjct: 193 NKPLQL---ALFRTLAFTGARKGEILALQWRDINFTDNTIKINKTVTFGLDNVLIIQTPK 249

Query: 194 -GDKIRIVPLLPSVRKAILEY---YDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRY 246
               +R + + P   K +  +        F L  N   P   +F   +   + P    +Y
Sbjct: 250 TKTSVRSISMDPQTMKILKSWKKTQKETYFKLGFNTLNPTQLVFPSTKNTVMQPPKVGKY 309

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKN 305
           + +L     L    T H  RH+  + L   G  ++ +Q  LGH  + TT  IY +V  K 
Sbjct: 310 LDRLVNLYEL-KRITPHGFRHTHCSLLFEAGASVKEVQDRLGHSNIQTTMNIYAHVTEKA 368

Query: 306 GGD 308
             +
Sbjct: 369 KEN 371


>gi|296448773|ref|ZP_06890625.1| integrase family protein [Methylosinus trichosporium OB3b]
 gi|296253710|gb|EFH00885.1| integrase family protein [Methylosinus trichosporium OB3b]
          Length = 316

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 100/287 (34%), Gaps = 18/287 (6%)

Query: 42  DTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS-GIKSFLK 100
           D ++FL +L      K  +  I       +   ++ RR + +   ++ RS++  +++ L 
Sbjct: 23  DIKRFLAWLEAEIGHKTMLPAIDN---NLVARLVATRRAEGVATATVNRSVTEPLRAILT 79

Query: 101 YLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
                             L ++    R L   +   L              +      I 
Sbjct: 80  RAAFWGQAVARVDWGEHKLAEAQERVRELTAAEEARLF-----------AALRPDFHPIA 128

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
             L   GLR +EA  L   ++  D + + ++GKG  +  +PL  +    +          
Sbjct: 129 RFLIITGLRRAEACRLAWSDVDLDGARMVVRGKGGTVDTLPLPDAAIAILRAESGRHAEL 188

Query: 221 LNLNIQLPLFRGI--RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
           +        + G      P+ P        + RR   L      H LRH+ AT L+   G
Sbjct: 189 VFTYQVRHRWGGKIGARVPIEPDTLGTAFWRARRAAKLT-DLRLHDLRHTAATRLVRATG 247

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           +L + Q  L H R++TT  Y +V   +    + +      P   Q +
Sbjct: 248 NLAAAQKALRHRRITTTMRYAHVTEDDLRAALNKAAPVATPVAPQTE 294


>gi|13925893|gb|AAK49458.1|AF315786_1 integrase [Pseudomonas aeruginosa]
 gi|14276840|gb|AAK58417.1|AF315351_1 integrase [Pseudomonas aeruginosa]
          Length = 172

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 79/187 (42%), Gaps = 27/187 (14%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ 191
             T+ ++
Sbjct: 162 HGTIIVR 168


>gi|301048269|ref|ZP_07195303.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 185-1]
 gi|300299891|gb|EFJ56276.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 185-1]
          Length = 200

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 66/181 (36%), Gaps = 8/181 (4%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K  N     L   +  +L+       +  T    ARN  +  L +  G R SE   L   
Sbjct: 4   KADNKKRNFLTHSEIESLL------KAANTGPHAARNYCLTLLCFIHGFRASEICRLRIS 57

Query: 180 NIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           +I      + I   K       PLL    +A+  +  +     +   +  +F   +G PL
Sbjct: 58  DIDLKAKCIYIHRLKKGFSTTHPLLNKEIQALKNWLSIRTSYPHAESE-WVFLSRKGNPL 116

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +   F   I       GL L    H LRHS    L + G D R IQ  LGH  +  T  Y
Sbjct: 117 SRQQFYHIISTSSGNAGLSLEIHPHMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWY 176

Query: 299 T 299
           T
Sbjct: 177 T 177


>gi|298528847|ref|ZP_07016250.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298529858|ref|ZP_07017260.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298529885|ref|ZP_07017287.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298531268|ref|ZP_07018668.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298531275|ref|ZP_07018675.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508878|gb|EFI32784.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508885|gb|EFI32791.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509232|gb|EFI33136.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509259|gb|EFI33163.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510283|gb|EFI34186.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 322

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 58/317 (18%), Positives = 109/317 (34%), Gaps = 39/317 (12%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L     +++Q    E G    +L +       ++   A         +    L+      
Sbjct: 8   LAGHLNDFIQY-RKELGYVNKSLANQLRALDYYVRDNA---------RGWEDLTPAF--- 54

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F+  R   K    ++   +   ++F  YL +      + + ++    ++  +P   + +Q
Sbjct: 55  FLGFRDGIKGSPATVNNVIQATRNFFAYLHRTGCCEHNPVQDLPAKTENAFIPFIFSPEQ 114

Query: 134 ALTLV---DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
              L+    + +  +  +   +D      L L   CGLR+SE L+L  ++    Q T+ I
Sbjct: 115 VEQLLQGVQSQIRRSREKCFLVDMGIYIALMLQARCGLRMSEPLNLGLEHFDPVQGTIYI 174

Query: 191 QG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           Q  K  K R++P+    +K +  +  L      L    P         L          +
Sbjct: 175 QKTKFHKDRLIPIPWEAQKELDNFLSLRD---ALCCTSPYLLPGFKNALRTNQVYPVFHR 231

Query: 250 LRRYLGLPL-----------STTAHTLRHSFATHLLSNGGD--------LRSIQSILGHF 290
             R  G+               T H+LRHSFA + L    D        L  + + +GH 
Sbjct: 232 AVRETGIHAPRRIIANMVFGHPTPHSLRHSFAVNTLKAARDRGRDPQAVLPVLSAYMGHS 291

Query: 291 RLSTTQIYTNVNSKNGG 307
           +   T +Y  V      
Sbjct: 292 KYRYTALYLKVMDAEKR 308


>gi|218290869|ref|ZP_03494933.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218239136|gb|EED06338.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 377

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/322 (17%), Positives = 114/322 (35%), Gaps = 41/322 (12%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
            N L       + K  ++WL  L+ +  +   T + Y          +  +    I   T
Sbjct: 52  NNGLLSTSDMTVGKLLEDWL--LDKQFHVKPTTFELYSR-------IVTIHIAPMIGHLT 102

Query: 63  IRQLSYTEIRAF--ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           +  L    I+    + +++T  +  ++++   S +++ LK   K  +        +   +
Sbjct: 103 LSDLRPDHIQNMYRMLQQKTPPLQAKTIRTIHSILRNALKRALKWGLIPRDPSEAVELPR 162

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                      +Q  T +           + ID+R   I  L    G+R  E L+L   +
Sbjct: 163 SPRRTLAIWTPEQIRTFL--------AVNQDIDSRYYTIFVLAIYTGMRKGEILALRWSD 214

Query: 181 IMDDQSTLRIQGKGDKI---------------RIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           I  ++  +++      +               R + +   V+  +L + +    +  L  
Sbjct: 215 IDFERDIIQVTRTFSWVDGEAMFLEAKTHHSNRSIAISHDVKVQLLRHREFQEQEKRLYA 274

Query: 226 QLPLFRGI-----RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
                  +      G+P+     Q+  R   +  GLP     H LRH+ A+ LL  G   
Sbjct: 275 DSYHDGNLVVARPDGEPIRLSSLQKQWRHAVKRAGLP-EIRFHDLRHTHASLLLLQGVHP 333

Query: 281 RSIQSILGHFRLSTTQ-IYTNV 301
           + +   LGH  +S T   Y++V
Sbjct: 334 KIVSERLGHSNISITMDTYSHV 355


>gi|150010186|ref|YP_001304929.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149938610|gb|ABR45307.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 310

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 101/296 (34%), Gaps = 40/296 (13%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  L  ++  S  T +SY+   R F  F                ++   +  + S    
Sbjct: 13  YITCLREKKRYS--TAKSYQDALRSFKCFCGRKEI------PYAYINRDTLLRYQSWLLA 64

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITT------ESNILNMRNLKKSNSLPRALNEKQA 134
           +     ++   +  I+       +           ++    + + K+  +LP      ++
Sbjct: 65  KGCARNTVSTYMRRIRHIYNLAVEVGEAAYIPHLFKNVFTGVES-KRKKALP-----SES 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           L L+    +    + +       A   +   CG+   +   L  ++I +   +   + K 
Sbjct: 119 LRLLMTSPVTDPQQKRTQS----AFCLMFLFCGMAFVDLAHLRKEDIKEGILSYY-RQKS 173

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP----------GVFQ 244
             +  V +    +  + E       D        LF  + G               G F 
Sbjct: 174 GSLIQVEIPAEAQGLLNELAADTTED-----SPYLFPFLEGMKTGEDAYKEYNTVLGGFN 228

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           R ++ L   +G+    T++T+RHSFAT L      +  I  +LGH  + TTQIY  
Sbjct: 229 RRLKTLSESIGIRTRVTSYTIRHSFATTLKEQNVPIEMISELLGHKSIKTTQIYLK 284


>gi|255011874|ref|ZP_05284000.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313149708|ref|ZP_07811901.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313138475|gb|EFR55835.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 363

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 107/268 (39%), Gaps = 25/268 (9%)

Query: 49  FLAFYTEEKITIQTIRQLSYTEIRAFISKRR----TQKIGDRSLKRSLSGIKSFLKYLKK 104
               + E K + + +      + RA+I + +    ++KI   +     +     ++   +
Sbjct: 113 HFEEFCERKCSFRDLSVSLCEKYRAYILRDKHLTSSKKISHNTASAYFNVFLKMVRLAYE 172

Query: 105 RKITTESNILNMRNL-KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
            KI +      ++ +    ++L   L+  +        +L  +  + + +   + +  + 
Sbjct: 173 DKIISHDYTEIIKPIVWNHDTLKEYLSNDEV------NILRQTPYSPYPELPKACLFSIF 226

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
              GLR S+ L+L  +NI+       I+ +  K  ++  LP  + A+             
Sbjct: 227 --TGLRRSDILALRWENIVKRSHNTFIEIQCSKTGVLIRLPLSKPAL-------NVLGKR 277

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             +  +F+      L   +   ++++     G+    T H  RH+FA  L   G ++ +I
Sbjct: 278 KEEGIVFQS-----LTISILNLHVQKWLASAGITKHITFHCFRHTFAMLLQEKGVEIYTI 332

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             +L H ++S+TQIY  V ++   + + 
Sbjct: 333 SKLLAHKQVSSTQIYAKVTNQQVNEAIQ 360


>gi|256826767|ref|YP_003150726.1| site-specific recombinase XerD [Cryptobacterium curtum DSM 15641]
 gi|256582910|gb|ACU94044.1| site-specific recombinase XerD [Cryptobacterium curtum DSM 15641]
          Length = 307

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 107/299 (35%), Gaps = 59/299 (19%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q+WL  L     L  LT  SY+    Q +   A + E + T+    QL  + + A     
Sbjct: 38  QSWLDKLVPNLRLCDLTRISYQ----QLINDYAEHHERQTTMDFHHQLKGSILDA----- 88

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM----RNLKKSNSLPRALNEKQA 134
                                       +        +    R  K      + LN+ + 
Sbjct: 89  ------------------------VDEGLIPRDPTRKVIIKGRQPKPKK--IKYLNQFEL 122

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             ++ ++ L       W       ++ L+   GLR SEAL L P +      T+ +    
Sbjct: 123 HAMLADLDLGKEATLDW-------LILLIAKTGLRFSEALGLMPADFDFTHQTVSVNKTW 175

Query: 195 DKIRIVPLLP-----SVRKAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           D  R    +P     SVRK  L++     L      L  + P+F   +            
Sbjct: 176 DYKRNGGFVPTKNVSSVRKVQLDWQLVMQLAGLLKELPAEKPIFVDGKVYNSTANGV--- 232

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           + +  +  G+P+  T H LRH+ A+ LL  G  + S+   LGH  ++TTQ  Y ++  +
Sbjct: 233 LARHCKRAGVPV-ITIHGLRHTHASLLLFAGVSIASVSRRLGHASMTTTQETYLHIIRE 290


>gi|154505934|ref|ZP_02042672.1| hypothetical protein RUMGNA_03476 [Ruminococcus gnavus ATCC 29149]
 gi|153793952|gb|EDN76372.1| hypothetical protein RUMGNA_03476 [Ruminococcus gnavus ATCC 29149]
          Length = 376

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/297 (13%), Positives = 105/297 (35%), Gaps = 36/297 (12%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
            T+++Y   T +++  +     E      +  +     +        Q+    ++ ++  
Sbjct: 86  NTVRNY---TERYIKNIKPVIGEM----PLSDVKPLHCQKIFYDMADQEYRTSTIYQARI 138

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            + +  +Y K+ ++   +     +++K     P   +EK+     D       +      
Sbjct: 139 ALYNMFEYAKENEVLCSNPCK--KSVKSDMGKP---SEKKVALTRDIQKTFLQYAEGQSY 193

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK----------------- 196
                    +   GLR  E + L  +++     T++I+   +                  
Sbjct: 194 ENQY---RFILQTGLRTGELVGLKWKDVDLKSKTIQIRRSMEYRYSAKKWRIGEPKSKSG 250

Query: 197 IRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            R +PL       + +    +    +++   +  +F   +G P+    +   + ++    
Sbjct: 251 YRTIPLTEEAVAILKKQKEKNKRISEISTEWEEFVFLCRKGTPVKNSTYDTALFKICDKA 310

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWM 310
            +P   + H LRH+FAT  +  G   +++Q +LGH  +  T  +Y +   +     M
Sbjct: 311 KIPR-FSMHILRHTFATRCIEAGMKPKTLQMLLGHSNIGITMNLYVHTTEEEKKKEM 366


>gi|256159368|ref|ZP_05457151.1| Phage integrase [Brucella ceti M490/95/1]
 gi|256254665|ref|ZP_05460201.1| Phage integrase [Brucella ceti B1/94]
 gi|261221841|ref|ZP_05936122.1| phage integrase [Brucella ceti B1/94]
 gi|265997806|ref|ZP_06110363.1| phage integrase [Brucella ceti M490/95/1]
 gi|260920425|gb|EEX87078.1| phage integrase [Brucella ceti B1/94]
 gi|262552274|gb|EEZ08264.1| phage integrase [Brucella ceti M490/95/1]
          Length = 308

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 103/276 (37%), Gaps = 31/276 (11%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97
           S++ + R FL  +    +E +            + + I   R +   + ++ R ++ +  
Sbjct: 57  SHKYNVRSFLGEI----DEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSK 112

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
            L+  K  K+    N+      K+     R L +++   L   +                
Sbjct: 113 LLR--KAHKMGDIFNLPEFIRQKERVGRIRFLEQEEEKRLFAAIKSRCEDS--------Y 162

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            +   L   G R+ EA+ LT  +I + + T  +  K ++ R VPL    RKA        
Sbjct: 163 RLSVFLVDTGCRLGEAIGLTWNDIQEQRVTFWV-TKSNRSRTVPLTRRARKA-------- 213

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLS 275
                  ++ P         LN   F++   + +  +GL        H LRH+ A+ L+ 
Sbjct: 214 SHIPRERLKGPF------SMLNQVRFRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVR 267

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              D+R +Q  LGH  L  T  Y ++ + +    + 
Sbjct: 268 GDIDIRRVQMWLGHQTLQMTMRYAHLATHDLDSCVK 303


>gi|227431405|ref|ZP_03913455.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227352833|gb|EEJ43009.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 375

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/307 (13%), Positives = 115/307 (37%), Gaps = 35/307 (11%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L ++ +E    + T++  E    + +     +         +  +   +++ +I+  + +
Sbjct: 74  LYDMWLETY--QHTVE--ESTLNKTMNVFNVHIIPAWGDTHVTDIKPLDLQRYINTMQGK 129

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN---SLPRALNEKQALTLV 138
            +  R +   L   +  L    +  +        +   K+        + ++  +    +
Sbjct: 130 ILHYRKITGYL---RRLLNIAVRMDMIPVDPFTKIEMPKERRQVNKRKQFMDVDEFKAFL 186

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-------- 190
           +        + K+I+ +   +L L    G+R  E L+L  + +  +   + I        
Sbjct: 187 EV----LDSQYKYINQQAYTLLRLGALTGMRTEELLALQWEQVDFNGGYISIVQALGRGF 242

Query: 191 --------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
                          R + +   +   + ++Y++  ++ N +         +GK L    
Sbjct: 243 NGGTYIKAPKSQTSKRTLKIDNKMLAVLSDWYEVSHYNSNDDFVF----NNQGKTLQVMR 298

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
             +++  +    G+ +  + H LRH++AT  L  G  ++ +Q+ LGH  +S T  +Y+++
Sbjct: 299 PNKWLHDVSDKYGVAVGLSMHKLRHTWATLALDQGASVKQVQTYLGHADVSMTLDVYSDI 358

Query: 302 NSKNGGD 308
             +   +
Sbjct: 359 TKRASDE 365


>gi|152983145|ref|YP_001352184.1| phage integrase family site specific recombinase [Janthinobacterium
           sp. Marseille]
 gi|151283222|gb|ABR91632.1| site-specific recombinase, phage integrase family
           [Janthinobacterium sp. Marseille]
          Length = 328

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/270 (20%), Positives = 101/270 (37%), Gaps = 25/270 (9%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           +Q L+ L  +    +   T+ QL   E+  +  +R +  +G  +++  L+ I    +   
Sbjct: 80  KQELVRLRRWQSNPLAQLTMPQLRAAELAKYRDQRLSDGLGANTVRLELALISHVYEVAI 139

Query: 104 KRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
           K        + +  +R  K      R L E +   L++          K   A    ++ 
Sbjct: 140 KDWGLEVLINPVRIIRKPKLPRGRERRLTEGEEDLLLEYC-------KKKGAALLRLVII 192

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           L     +R  E  SL  +NI  D   + + Q K    R VPL    +K +  Y      +
Sbjct: 193 LALETAMRRGEIASLHTENIDLDSRLIFLDQTKNGDKRKVPLSRRAQKELENYLCGKHGE 252

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
           L               PL+P        Q  +  G+    T H LRH   + L   G ++
Sbjct: 253 L--------------VPLHPDNISGAFSQACKVCGIS-GLTLHDLRHEATSRLFEKGFNM 297

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
             + +I GH  L+  + YT++++ +    +
Sbjct: 298 MEVAAITGHKTLTMLKRYTHLDTADFLVRL 327


>gi|70726809|ref|YP_253723.1| integrase [Staphylococcus haemolyticus JCSC1435]
 gi|68447533|dbj|BAE05117.1| integrase [Staphylococcus haemolyticus JCSC1435]
          Length = 341

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 60/304 (19%), Positives = 125/304 (41%), Gaps = 29/304 (9%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            +  L    + W +  +     S +T ++Y+     +   +       I  + ++ LS  
Sbjct: 52  PNLTLYDYFKTWCETFK----KSTVTPKTYKS----YASAIEHINNHPIGKKKLKDLSRY 103

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSG-IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             + FI++  ++     S+ R L+G I++ L       +  ++    + + + S   P  
Sbjct: 104 HYQDFINEF-SKHHSKESI-RKLNGYIRTSLDDAVYEGLIAKNPTFKV-SYRASK--PNK 158

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
             + + + L D  +L     TK  D  +S +L+++   G RIS AL+L  + I   +S +
Sbjct: 159 SEDSKYINLKDYEILKQHLMTK--DNASSLVLFIMICTGCRISGALNLKREYINQVKSEI 216

Query: 189 RI--QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            I         R V +       I++  D  P  ++  +            L      + 
Sbjct: 217 YIDEHKTDSSPRYVSISQKDMNHIIKSIDQLPRTIDGTVFGE---------LTNNAVNKR 267

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKN 305
           ++     LG+    T+H LRH+  ++LL+ G  +  I   LGH  +S TT++Y+++  + 
Sbjct: 268 LKVYCNNLGI-KEITSHALRHTHCSYLLAKGISIYYISKRLGHKNISVTTEVYSHLLEET 326

Query: 306 GGDW 309
             + 
Sbjct: 327 YKEE 330


>gi|299145657|ref|ZP_07038725.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           3_1_23]
 gi|298516148|gb|EFI40029.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           3_1_23]
          Length = 403

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 103/282 (36%), Gaps = 12/282 (4%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             + Q+Y+   R F  ++     +K +I    Q S  E   +I ++    +  R++K+  
Sbjct: 125 PHSFQTYKSKLRIFCEWVEQTGLDKQSICFFEQSSICEFLCYIVEKH--GVSQRTVKKYA 182

Query: 93  SGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
             +  F  YL K ++I   + + ++ N+         + ++ A  + D      S   K 
Sbjct: 183 QILHGFFDYLLKVKRIIDTNPVHDIPNM-------GTIKDEAAKPIPDRERQLLSMYIKE 235

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
            D +   +  + Y C +R +E   L   +I  D   + +     K R    +   R+   
Sbjct: 236 HDPQLWLVCQMEYYCAIRPNECRQLQIGDIDFDNHIITVPKDISKNRQTESVNIPRQLYD 295

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
             Y +   D++                 L    F+    ++R  L +      ++ +H+ 
Sbjct: 296 YIYKILNLDMHPKDFYIFSHNGVPGKTMLGKNNFRFRFDKIRDRLNISPQYKLYSFKHTG 355

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              L++ G D   +Q    H  + TT+ Y   N     D + 
Sbjct: 356 GVKLVNEGIDTWELQRHFRHKSIDTTERYIRRNFAVKSDKIR 397


>gi|254260803|ref|ZP_04951857.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 1710a]
 gi|254219492|gb|EET08876.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 1710a]
          Length = 247

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 104/253 (41%), Gaps = 13/253 (5%)

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           R+L   ++R ++S R    + + ++KR L  + + + +++      E     + N  +S 
Sbjct: 2   RELKRGDVRRYVSARLADGVCESTVKRELRLLSAAINFVRTEHDYPE-----LANPVQSL 56

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            L    +  + ++  +   L  +             + L    G R +E L+L    +  
Sbjct: 57  GLDGGESRVRWISRSEATALILAAGAAARQPHLRNFVRLALSTGCRKNELLALEWHRVDF 116

Query: 184 DQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           ++S  R+     K  K R+VPL      A+ +         +      +F    G+ +  
Sbjct: 117 ERSHFRLECEHTKNGKRRLVPLNSGALLALRD--QRDWVARHCAGSEWVFASSSGRRV-- 172

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           G  Q+         G+  +   H LRH+FA+ L+  G  L  ++ +LGH  ++  + Y +
Sbjct: 173 GNLQKGFVAACARAGIE-NFRIHDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAH 231

Query: 301 VNSKNGGDWMMEI 313
           ++  +G + + ++
Sbjct: 232 LSPDHGREAVQKL 244


>gi|323479615|gb|ADX79054.1| phage integrase family protein [Enterococcus faecalis 62]
          Length = 389

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 61/339 (17%), Positives = 124/339 (36%), Gaps = 53/339 (15%)

Query: 7   PEIVSFELLKERQNWLQNLEI-ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           P+++ ++ L      L  LE+ ++ ++  T   Y+           F+  +KI +  ++ 
Sbjct: 69  PDLLFYDYL------LNYLEVSKKQVAFNTYVGYKHYVHN--RIYKFFYPKKIKLNRLKP 120

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
                ++ F            ++    + I+  L+     ++ + +    +R  KK   +
Sbjct: 121 Y---HLQDFYQYMLNDDCTANTVIHYHAFIRKALQEAVITELISTNVADKVRKPKKKQFV 177

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
            +  N+ + L L+D             + +   ++ L    GLR SE L L    I    
Sbjct: 178 SQVYNQHEILKLLDI----------LSEEKLYLVVLLTAFYGLRRSEVLGLKWSAIDFLN 227

Query: 186 STLRIQG-------------KGDKIRIVPLLPSV-------------RKAILEYYDLCPF 219
             + I               K D+ +      ++              K   +   L   
Sbjct: 228 KKIMINHVIIENPENMSQLIKKDQTKNSSSYRTLPLVETIERALVNQAKWQQDNRILLGE 287

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
           D  L     +F    G+ + P      + +L +  GL      H LRHS A+ +L +G +
Sbjct: 288 DYILKDSEYVFTMEDGRLMKPQYVTHRLSKLIKKNGL-KKIRFHDLRHSNASIMLDSGEN 346

Query: 280 LRSIQSILGHFRLSTTQ-IYTNVNS---KNGGDWMMEIY 314
           ++SIQ  LGH   STT  +YT++ +   +   + +   +
Sbjct: 347 MKSIQEWLGHASYSTTANLYTHLTAGVKERAAEALENAF 385


>gi|315179070|gb|ADT85984.1| phage-related integrase [Vibrio furnissii NCTC 11218]
          Length = 341

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/287 (18%), Positives = 111/287 (38%), Gaps = 16/287 (5%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           +++  D++ FL   +         + +  ++  ++  F++      +   S+ R  + + 
Sbjct: 66  RNHHRDSKTFLSR-SKRVMAAFGKERVTDVTRRDVERFLNSLTD--LSHASINRYHAFLS 122

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
                  + +I  +S +  ++   ++N+  R L+ K+A +   N            +  +
Sbjct: 123 KLFSMAVEHEIIDKSPVKGVKKRVENNAKDRVLSSKEAESFCRNACAE-------PNFLH 175

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQST-LRIQGKGDKIRIVPLLPSVRKAILEYYD 215
           ++ L L    G+RI   +SLT   + DD S+ L    K  K + +      ++ I +   
Sbjct: 176 ASALMLSLLTGMRIGNVMSLTRAMLADDLSSALLPMTKSGKSQRIYFSEPAKRLIRKCLK 235

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG-LPLSTTAHTLRHSFATHLL 274
           +   D       P           P      I+Q  +  G L    T H LR ++AT +L
Sbjct: 236 VSFNDW----VFPSLNNRGEHIAYPRACMERIQQAMKQEGCLDAPFTIHDLRRTYATQML 291

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321
               D+R  Q  LGH  ++ T+ Y    + +      +  D   P++
Sbjct: 292 LATNDIRLAQQSLGHSNVNVTERYAYYQNTHLAQASQQTVDAMLPNL 338


>gi|29376747|ref|NP_815901.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|227517113|ref|ZP_03947162.1| bacteriophage integrase [Enterococcus faecalis TX0104]
 gi|227555267|ref|ZP_03985314.1| bacteriophage integrase [Enterococcus faecalis HH22]
 gi|307285221|ref|ZP_07565367.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|29344212|gb|AAO81971.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
 gi|227075427|gb|EEI13390.1| bacteriophage integrase [Enterococcus faecalis TX0104]
 gi|227175589|gb|EEI56561.1| bacteriophage integrase [Enterococcus faecalis HH22]
 gi|306502922|gb|EFM72183.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|315574659|gb|EFU86850.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309B]
 gi|315581034|gb|EFU93225.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309A]
          Length = 382

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 103/279 (36%), Gaps = 29/279 (10%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK---IGDRSLKRSLSGIKSFL 99
            ++ L +      EKI    I++     ++      +  K   + +  +K+  + ++   
Sbjct: 96  LKRALAYFGKMQMEKIRPIHIQEFQQFLVQECFVTNKEGKIRPLSNNYIKQIFNKLRIIF 155

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           K     ++  E+ +  +  ++   S+       +   +      + S+   + +A    +
Sbjct: 156 KRAMVLEVIDENPVDTIGKIRTQRSVVAFWTVDEFKKVY-----NCSYRCDFQEAFYKRM 210

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQST------LRIQGKGDKI----------RIVPLL 203
           +  L+  GLR  E  +L   +I   + T      L I+ + D            R + L 
Sbjct: 211 MRFLFVTGLRSEELFALQWPDIDFHKGTCCVNKSLYIRTRTDYDFSDTKNASSIRTITLD 270

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
                 + E+ +      +    +  F G+   P +P  F   +++L    G+      H
Sbjct: 271 KQTIVDLREWKETQKTIGDDLGFIFTFDGL---PPSPKTFLGRVKKLAEIAGV-KPIHLH 326

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
            LRHS    L+ +  ++ ++   LGH  + TT   Y ++
Sbjct: 327 GLRHSHVAFLIEHNNNIYAVSKRLGHSSVKTTLDKYGHL 365


>gi|320188610|gb|EFW63272.1| Integrase [Escherichia coli O157:H7 str. EC1212]
          Length = 333

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 85/235 (36%), Gaps = 33/235 (14%)

Query: 80  TQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
            +K+ + ++ R  S + + F +  +  + + E+ +  +R  ++       L   +   L+
Sbjct: 121 KKKLSEATVNREQSYLHAVFAELKRLGEWSGENPLTGIRKFREEEKELAFLYVDEIERLL 180

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                  + +          ++ +    G R SEA  L    ++  + T  ++ KG K R
Sbjct: 181 IACDESRNKDLG-------VVVRIGLATGARWSEAEGLKQSQVLPGRITF-VKTKGKKNR 232

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP- 257
            VP+ P ++  +               +  LF                     +   +  
Sbjct: 233 TVPISPQLQAML------------PKKRGALFSPCYE----------AFDAAIKRAKIEL 270

Query: 258 -LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
                 H LRH+FA+H +  GG++  +Q ILGH  +  T  Y +    +    + 
Sbjct: 271 LDGQLTHVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAHFAPGHLEAAVE 325


>gi|239906103|ref|YP_002952842.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239795967|dbj|BAH74956.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 183

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 59/162 (36%), Gaps = 3/162 (1%)

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197
           +   L  + +    +AR+   L L++  GLR+SEA  L    +  +   L + + K    
Sbjct: 12  EVDKLIAATKGTRNEARDRCFLLLMFRHGLRVSEACGLVLSQVDTESRVLHVARLKKGLS 71

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
              PL     +AI  +                F   R    +       IR      GLP
Sbjct: 72  TTQPLRADELRAIKAWLTDR--AKMKPDTDSFFVSERRTAWSRKTAWLAIRHYGEVAGLP 129

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           L    H LRH+    L   G D R IQ  LGH  +  T  YT
Sbjct: 130 LPAHPHMLRHACGFALADQGADTRLIQDYLGHRNIQHTVRYT 171


>gi|218703010|ref|YP_002410639.1| tyrosine recombinase [Escherichia coli IAI39]
 gi|218372996|emb|CAR20881.1| tyrosine recombinase/inversion of on/off regulator of fimA
           [Escherichia coli IAI39]
          Length = 200

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 65/181 (35%), Gaps = 8/181 (4%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K  N     L   +  + +       +  T    ARN  +  L +  G R SE   L   
Sbjct: 4   KADNKKRNFLTHSEIESFL------KAANTGPHAARNYCLTLLCFIHGFRASEICRLRIS 57

Query: 180 NIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           +I      + I   K       PLL    +A+  +  +     +   +  +F   +G PL
Sbjct: 58  DIDLKAKCIYIHRLKKGFSTTHPLLNKEVQALKNWLSIRTSYPHAESE-WVFLSRKGNPL 116

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +   F   I       GL L    H LRHS    L + G D R IQ  LGH  +  T  Y
Sbjct: 117 SRQQFYHIISTSGGNAGLSLEIHPHMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWY 176

Query: 299 T 299
           T
Sbjct: 177 T 177


>gi|83310003|ref|YP_420267.1| integrase [Magnetospirillum magneticum AMB-1]
 gi|82944844|dbj|BAE49708.1| Integrase [Magnetospirillum magneticum AMB-1]
          Length = 359

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/314 (16%), Positives = 115/314 (36%), Gaps = 34/314 (10%)

Query: 23  QNLEIERGLSKLT-----LQSYECDT------RQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           +++  +R L++ T     L+ Y  +        Q    +  + +  ++ +T+  L   + 
Sbjct: 61  RHVFTDRSLAERTTLGDALEVYRDEVTVEKAGHQEGYVIKAWLKHPLSKRTLSSLKVRDF 120

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKY--LKKRKITTESNILNMRNLKKSNSLPRAL 129
           +A++++++   +G ++++  +  I +               + +L +          R L
Sbjct: 121 QAWVTEKKA-TVGPKTIRLHIGVISNLYNRLENLLEIEALPNPVLKLILPPLPEGRDRRL 179

Query: 130 NEKQAL--TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           N  +    T+ +            ++      +       +R +E + +  +++  +   
Sbjct: 180 NVIEHDDGTVRNEAEALIGACADAVNPWIRPAVEFALDGAMRRNEIVQMRWEHVDLNAGM 239

Query: 188 LRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           +R+     K    R V L P+  + +                LP     R  PL      
Sbjct: 240 VRLPAAITKTGVSRDVALSPAGVQVLR--------------TLPRSIDGRVFPLTADALY 285

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R   + R+  GL      H LRH  A+ L   G DL  I SI GH  L   + Y +V +K
Sbjct: 286 RAFVRARKRAGLD-DLHFHDLRHEAASRLREEGLDLMEIASITGHKTLQMLKRYVHVKAK 344

Query: 305 NGGDWMMEIYDQTH 318
           +  +   + +  +H
Sbjct: 345 DVVEKRQKSHGGSH 358


>gi|116749674|ref|YP_846361.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
 gi|116698738|gb|ABK17926.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
          Length = 348

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 101/256 (39%), Gaps = 24/256 (9%)

Query: 49  FLAFYTEEKITIQ-TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI 107
           F A    EK+     ++ +   E+R  + + ++      ++   LS +++ L+       
Sbjct: 83  FHARSLLEKLGNDIRLKDIGENEVRGLVRQLQSDGNSAATINSKLSVLQTLLRMSCNE-W 141

Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
                +     LK+     R L+ ++     ++ LL     T   DA +  +  +L   G
Sbjct: 142 RVIDRVPRFDRLKEKEGRLRTLSPEE-----ESRLLALLRRTGRHDAAD--LYMVLLDTG 194

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
             +SE LSL  + +      + I  +  + RI+P+   VR  +++   +       N+  
Sbjct: 195 ASLSEVLSLKWKGVDLVGGKIGIDVESGRNRILPMTRRVRSMLMQRMGMGIKSPFSNV-- 252

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
                           +   + +R+ +GL        H+LRH+FA   +  G  L ++++
Sbjct: 253 -----------TYQQAEYNWKWVRKQMGLGGDPGFVIHSLRHTFAARTVQRGIGLPALKA 301

Query: 286 ILGHFRLSTTQIYTNV 301
           +LGH  +  T+ Y   
Sbjct: 302 LLGHSTIRLTERYARF 317


>gi|311694590|gb|ADP97463.1| resolvase [marine bacterium HP15]
          Length = 198

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 92/205 (44%), Gaps = 22/205 (10%)

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            +  +++P+ L + + LTL++                +  IL L++  G R+SE L++TP
Sbjct: 3   PETLDTMPKYLLKPEVLTLLEAE----------THPMHRLILDLMWCIGARVSEVLTITP 52

Query: 179 QNIMDDQ---STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-- 233
            + +DD      +    K    R      S++++   +  +   D    IQ  L+ G   
Sbjct: 53  ASFIDDGYDFGVVLKTIKQGAGRPS--KRSLQRSPKRFIPILDRDFQTRIQSYLWMGKFR 110

Query: 234 ---RGKPLNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
              R  P+        I +L   +G   P     HT RHSFA HLL  G  L+ +  +LG
Sbjct: 111 QDERIFPITRQAVSANIDRLIDQVGGEPPFKIGCHTFRHSFAVHLLLYGRPLKFVSQLLG 170

Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEI 313
           H  + +T++YTNV + +G  ++  +
Sbjct: 171 HRSVESTEVYTNVLAFDGAHFLEGV 195


>gi|188526792|gb|ACD62277.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 50/94 (53%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 65  RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEEAGVAKPATPHTLRH 124

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 125 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|313201274|ref|YP_004039932.1| integrase family protein [Methylovorus sp. MP688]
 gi|312440590|gb|ADQ84696.1| integrase family protein [Methylovorus sp. MP688]
          Length = 338

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 63/329 (19%), Positives = 126/329 (38%), Gaps = 45/329 (13%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKL-TLQSY------ECDTRQFLIFLAFYTE 55
              L + +S EL + R        I+R  S   TL +       +   +Q   F   +  
Sbjct: 33  AQKLHDKISTELWEGR-------WIDRNQSGNMTLDAAFDKVMAQRWEKQRSWFSVIHNY 85

Query: 56  EKI-----TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITT 109
            +          + +++ + +   I + R  +  D ++ RS++ I + LK  +   ++  
Sbjct: 86  NRFKKYLKGSTKLSEITRSRLWEVIGEMREDEYTDGTINRSMAVISTILKTARDDWEVIE 145

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
           +     +  LK      R L + + L  ++       H     D  +  ++ +L   G R
Sbjct: 146 KIP--KVPLLKVGRGRMRWLKDDEELPFLEWFRKQGDH-----DMVD--LIEVLLETGCR 196

Query: 170 ISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
           +SE L L   ++  ++  L +   K  +    PL     +  L  Y          I +P
Sbjct: 197 VSEILRLKDTDVHINERRLYLGITKSGEEEYQPLSEYALQIFLRRY---------KIGVP 247

Query: 229 LFRGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
            F G+ R   L+     +                 HT+RH+ A+ L+ +G DL+ +Q  +
Sbjct: 248 PFEGVSRWGALSRFQTAKRHLGYAD----DHELVLHTMRHTCASRLVQSGVDLKRVQEYM 303

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            H  ++TT IY  ++S+        ++D+
Sbjct: 304 RHKDINTTLIYAKLSSEENAKT-ASVFDK 331


>gi|120599713|ref|YP_964287.1| phage integrase family protein [Shewanella sp. W3-18-1]
 gi|120559806|gb|ABM25733.1| phage integrase family protein [Shewanella sp. W3-18-1]
          Length = 339

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/279 (19%), Positives = 103/279 (36%), Gaps = 39/279 (13%)

Query: 41  CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR--TQKIGDRSLKR---SLSGI 95
              R     L      K+T+          +   I+      QK+   ++      LS +
Sbjct: 85  RKLRLICDGLGNPIASKLTVNDFATFRQMRLDGEIADGMGIKQKVKPHTVNHEHAYLSAV 144

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
             F +  +  + T  + +  + + K        L  ++   ++              +  
Sbjct: 145 --FSELKRLGEWTLPNPLEGLSHFKIDEMELAFLYAEEIPLVLAECDNSK-------NPH 195

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
            + ++ +    G R SEA SL    +++++ T  I+ KG K R VP+  ++   I     
Sbjct: 196 LTIVVKICLSTGCRWSEAESLRGSQVVNNRITF-IKTKGKKNRTVPISKALADEI----- 249

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHL 273
                     + PLF   R          +   Q  +  GL  P     H LRH+FA+H 
Sbjct: 250 -------PQSRGPLFSSCR----------KAFAQAIKRTGLTFPEGQMTHILRHTFASHF 292

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           + NGG++  ++ ILGH  +  T  Y +   ++  D + +
Sbjct: 293 MMNGGNILVLKQILGHADIKETMRYAHFAPEHLDDAITK 331


>gi|317490960|ref|ZP_07949396.1| phage integrase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920507|gb|EFV41830.1| phage integrase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 368

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 89/233 (38%), Gaps = 37/233 (15%)

Query: 82  KIGDRSLKR---SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           K+  R++     +LS + S LK  K       + +      K   S    L+  +   L+
Sbjct: 128 KVKPRTVNLEQLNLSAVFSTLK--KLGHWPAPNPLTGFPMFKLHESELAFLDNLEIKRLL 185

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           D+        ++  +     I  +    G R SEA +L   + +       I+ KG K R
Sbjct: 186 DSC-------SESTNPHLLTIAKICLSTGARWSEAETLE-GHQVSKYRISFIKTKGKKNR 237

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-- 256
            VP+   + + +                 P  RG    P      ++   +  +  G+  
Sbjct: 238 TVPITQELYEEL-----------------PKNRGRLFTPC-----RKAFERAVKRAGITL 275

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           P     H LRH+FA+H + NGG++  ++ +LGH  +  T IY +    +  D 
Sbjct: 276 PDGQCTHVLRHTFASHFMMNGGNILVLRDVLGHADIRMTMIYAHFAPDHLEDA 328


>gi|227519140|ref|ZP_03949189.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX0104]
 gi|227073417|gb|EEI11380.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX0104]
          Length = 389

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 61/325 (18%), Positives = 120/325 (36%), Gaps = 50/325 (15%)

Query: 7   PEIVSFELLKERQNWLQNLEI-ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           P+++ ++ L      L  LE+ ++ ++  T   Y+           F+  +KI +  ++ 
Sbjct: 69  PDLLFYDYL------LNYLEVSKKQVAFNTYVGYKHYVHN--RIYKFFYPKKIKLNRLKP 120

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
                ++ F            ++    + I+  L+     ++ + +    +R  KK   +
Sbjct: 121 Y---HLQDFYQYMLNDDCTANTVIHYHAFIRKALQEAVITELISTNVADKVRKPKKKQFV 177

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
            +  N+ + L L+D             + +   ++ L    GLR SE L L    I    
Sbjct: 178 SQVYNQHEILKLLDI----------LSEEKLYLVVLLTAFYGLRRSEVLGLKWSAIDFFN 227

Query: 186 STLRIQG-------------KGDKIRIVPLLPSV-------------RKAILEYYDLCPF 219
             + I               K D+ +      ++              K   +   L   
Sbjct: 228 KKIVINHVIIENPENMSQLIKKDQTKNSSSYRTLPLVETIERALVNQAKWQQDNRILLGD 287

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
           D  L     +F    G+ + P      + +L +  GL      H LRHS A+ +L +G +
Sbjct: 288 DYILEDNEYVFTMEDGRLMKPQYVTHRLSKLIKKNGL-KKIRFHDLRHSNASIMLDSGQN 346

Query: 280 LRSIQSILGHFRLSTTQ-IYTNVNS 303
           ++SIQ  LGH   STT  +YT++ +
Sbjct: 347 MKSIQEWLGHASYSTTANLYTHLTA 371


>gi|154487520|ref|ZP_02028927.1| hypothetical protein BIFADO_01375 [Bifidobacterium adolescentis
           L2-32]
 gi|154084038|gb|EDN83083.1| hypothetical protein BIFADO_01375 [Bifidobacterium adolescentis
           L2-32]
          Length = 389

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 96/274 (35%), Gaps = 30/274 (10%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102
            +        + E +  ++ ++ ++  E++ +++    ++    ++ R+ + ++S ++  
Sbjct: 86  IKSLEDAWRVHVEPQWGMREMQSITRDEVQRWVTDLAGRRSASVTI-RAENLLRSLMERA 144

Query: 103 KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
           K  +   ++    +   +K       L+  +   +                     I+  
Sbjct: 145 KADRCIHDNPCDGIELPRKQVRKHVYLSADELSRVAMQCGWREP------------IVLT 192

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGK-------------GDKIRIVPLLPSVRKA 209
           L  CG+R  E ++L  +++   +  L I                        + P V + 
Sbjct: 193 LGLCGMRWGELVALRVEDVDLQRCRLHIYRSITRLSSRLVETDPKTHDGRSVMFPLVLRP 252

Query: 210 ILEYYDLCPFDLNLNIQLPLFR--GIRGKPLNPGVFQRYIRQLRRYLGLPL-STTAHTLR 266
           +L          +     P        G   NP     +     R  G+     T H LR
Sbjct: 253 LLARQCEGRRSSDFLFTAPGEPLDEPMGNGWNPTRSDGWFAVALRRAGVDRGHMTIHDLR 312

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYT 299
           H+ A+ ++ +G +++++Q  LGH   + T  +Y 
Sbjct: 313 HTAASLMVQSGANVKTVQRQLGHKSAAMTLDVYA 346


>gi|78062255|ref|YP_372163.1| Phage integrase [Burkholderia sp. 383]
 gi|77970140|gb|ABB11519.1| Phage integrase [Burkholderia sp. 383]
          Length = 420

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 65/367 (17%), Positives = 123/367 (33%), Gaps = 59/367 (16%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
             +  P+I +   L   + WL         +  T Q+Y  +  + L++      + ++  
Sbjct: 57  SNSAHPQIAATNDLDAVRAWLARFVD----TPTTFQNYRKEAERLLLWAVIACGKPLS-- 110

Query: 62  TIRQLSYTEIRAFIS-------KRRTQK----------------IGDRSLKRSLSGIKSF 98
           ++        R F+                              +   S +++L  +   
Sbjct: 111 SLTHEDLVVYRQFLLEPAPAELWCANGGRKHPRDDPRWRPFYGPLSAASQRQALVILNVM 170

Query: 99  LKYLKKRKITTESNIL--NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
             +L +      + +     R  + +  + R L +    ++ D +      + +     +
Sbjct: 171 FSWLVQAGYLAGNPLALSRQRQRRPAPRVTRHLGQPLWQSVKDAIAAMPRDDARAGFHAD 230

Query: 157 SA--ILYLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSVR 207
            A  +  LLY  GLRI+EA   T             D+  L + GKG + R+VP    + 
Sbjct: 231 RARWLFTLLYLGGLRITEAADTTMGQFFCRRDADGRDRWWLDVTGKGGRQRLVPATDEMM 290

Query: 208 KAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST--- 260
             +  Y          +   P    L  G   KPL      R ++Q+ ++    L     
Sbjct: 291 AELSRYRRAHGLPALPSDGEPTPLVLPVGQARKPLTRAALHRIVKQVFQFAADRLRVNGE 350

Query: 261 ------------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                       +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +      
Sbjct: 351 AGEQQARVLEQASAHWLRHSAGSHMADGHVDLRLVRDNLGHVSLTTTSQYLHADDDWRHR 410

Query: 309 WMMEIYD 315
              E + 
Sbjct: 411 ETEEKHR 417


>gi|309795404|ref|ZP_07689822.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
 gi|308121054|gb|EFO58316.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
          Length = 369

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 95/239 (39%), Gaps = 29/239 (12%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + S++  +     ++    S + S F +  +  + +  + + NMR    +      L  +
Sbjct: 145 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 204

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q + L+D+         K  D   + ++ +    G R  EA++LT   +   + T  ++ 
Sbjct: 205 QIVELLDDC--------KRQDPILALVVKICLSTGARWREAINLTRSQVTKYRITF-VRT 255

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+   + + I+       F                       FQ      + 
Sbjct: 256 KGKKNRSIPISKELYEEIMALDGFNFF-------------------TDCYFQFLSVMEKT 296

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T  Y +++  +    + 
Sbjct: 297 SIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLSPDHLETALR 355


>gi|304437584|ref|ZP_07397539.1| phage integrase family site-specific recombinase [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304369397|gb|EFM23067.1| phage integrase family site-specific recombinase [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 368

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 109/319 (34%), Gaps = 42/319 (13%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
             +L        L   TL +Y+    + ++         + I  ++      I A     
Sbjct: 63  DEFLAMKRDVDKLEASTLSAYQGFLNRHIL---PQIPPSMKIADVKPSLLKHILA----- 114

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             Q  GDR+ +   + ++S  +  K  ++   + +  +R  K   +    +  +    L+
Sbjct: 115 --QIDGDRTRQAVYTLLQSIFRAAKFERLIENNPMEYIRKPKHKATAAGIVTPEIYHALL 172

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-------- 190
           D +    +            +    +  GLR  E ++L   +  +  +T+R+        
Sbjct: 173 DAIQGSQTEH----------LFKFAWDTGLRRGEIVALRWSDFDEKAATIRVSKARKRAT 222

Query: 191 ------QGKGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRG--KP 237
                        R V L P+  + +L +       L    ++L     +FR +R   +P
Sbjct: 223 EEYEGTTKTAYSARTVTLSPAAVQNLLAWKKKLATHLLQQGISLAKGDYIFRSLRDETQP 282

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQ 296
           +           L+R L LP     H+ RH+ AT L       + IQ  LGH  +S T  
Sbjct: 283 ITLTAVTHLFADLKRRLNLPADLRFHSFRHTHATLLAEQEISAKKIQVRLGHASVSFTMD 342

Query: 297 IYTNVNSKNGGDWMMEIYD 315
            Y +   +       ++  
Sbjct: 343 RYVHNTEQMQEGVTEKVVK 361


>gi|307566421|ref|ZP_07628857.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307344873|gb|EFN90274.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 375

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 58/279 (20%), Positives = 102/279 (36%), Gaps = 29/279 (10%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEIRAFISK-RRTQKIGDRSLKRS 91
           TL +Y         F+    EEK  ++ +   QLS   I  F      T    + S   +
Sbjct: 99  TLSNYHSTRSNLRTFI----EEKYKVKDLAFSQLSENFIYDFRDYFLGTLGFQESSFYGA 154

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
            S IK+  +   +  +       N +  +    LP+AL+      L++        E + 
Sbjct: 155 ASQIKTVCRLAYREGLADTLLFANAKIARGDKKLPKALDRCSLDKLMNIQFGELEEEMET 214

Query: 152 IDARNSAILYLLYGCGLRISEALSL-TPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVR 207
                  +       G    + + L   Q + DD+ +L +   + K   +  + LLP   
Sbjct: 215 A----RDLFVFACHTGAAYCDLMELSRLQLVRDDEGSLWLKFNRQKTGVLCRIKLLPEAI 270

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + I +Y       L                +    +Q Y++ LR    +    T HT RH
Sbjct: 271 RIIEKYKSDERESL-------------LPQMKYATYQSYLKALRLRASIAFPFTTHTARH 317

Query: 268 SFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +FAT + L  G  + ++  +LGH  +S T+ Y  V  + 
Sbjct: 318 TFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQK 356


>gi|307129611|ref|YP_003881627.1| Phage integrase [Dickeya dadantii 3937]
 gi|306527140|gb|ADM97070.1| Phage integrase [Dickeya dadantii 3937]
          Length = 363

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 85/233 (36%), Gaps = 33/233 (14%)

Query: 83  IGDRSLK---RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           +  R++    R+LS +  F    K       + +  +   K +      L   +   ++D
Sbjct: 129 VKPRTVNLEQRNLSAV--FGTLKKLGHWDAPNPLSGLPTFKIAQQELAFLAPNEIKRVLD 186

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                        +     +  +    G R SEA  L+ Q +   + T   + KG K R 
Sbjct: 187 ACAESA-------NPHLLLVTKICLATGARWSEAEGLSGQQVTPYRITYT-RTKGKKNRT 238

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VP+   +   I                  LF   R        F+R I +      LP  
Sbjct: 239 VPISRELYDEI------------PRKSGKLFSPCRK------AFERAINRTGIQ--LPDG 278

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              H LRH+FA+H + NGG++  ++ ILGH  +  T IY +    +  D + +
Sbjct: 279 QCTHVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAHFAPDHLEDAITK 331


>gi|257083313|ref|ZP_05577674.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|256991343|gb|EEU78645.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
          Length = 309

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 84/213 (39%), Gaps = 21/213 (9%)

Query: 103 KKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
               + +++    +    +  +   S  + LN+ +   L+  + L       W       
Sbjct: 90  VDEGLISKNPTRKIVIKGKAPRPKKS--KFLNQFEVQALLKELELGEQLNWDW------- 140

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212
            + L+   GL  SEAL+LTP++    +  + I+   +         S       RK  ++
Sbjct: 141 FILLVVKTGLCFSEALALTPKDFDFSKQKITIEKTWNYKNPTGFFQSTKNESSKRKVQID 200

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +     F   +    P+        +        ++ L +   +P+  T H+LRH+ A+ 
Sbjct: 201 WQTAMQFSQLIRNMPPMEPIFVKGRVFNSTINSRLKVLCKRAQIPV-ITVHSLRHTHASL 259

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           LL  G  + S+ + LGH  ++TTQ  Y ++  +
Sbjct: 260 LLFAGVSIASVATRLGHSSMTTTQETYLHIIQE 292


>gi|69245016|ref|ZP_00603174.1| Phage integrase [Enterococcus faecium DO]
 gi|257879288|ref|ZP_05658941.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257881894|ref|ZP_05661547.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|258615693|ref|ZP_05713463.1| phage integrase family protein [Enterococcus faecium DO]
 gi|260558732|ref|ZP_05830921.1| phage integrase [Enterococcus faecium C68]
 gi|293563234|ref|ZP_06677687.1| phage integrase family protein [Enterococcus faecium E1162]
 gi|294617960|ref|ZP_06697565.1| phage integrase family protein [Enterococcus faecium E1679]
 gi|294622363|ref|ZP_06701392.1| phage integrase family protein [Enterococcus faecium U0317]
 gi|314937316|ref|ZP_07844656.1| AP2 domain protein [Enterococcus faecium TX0133a04]
 gi|314943381|ref|ZP_07850152.1| AP2 domain protein [Enterococcus faecium TX0133C]
 gi|314949077|ref|ZP_07852439.1| AP2 domain protein [Enterococcus faecium TX0082]
 gi|314953482|ref|ZP_07856398.1| AP2 domain protein [Enterococcus faecium TX0133A]
 gi|314994170|ref|ZP_07859477.1| AP2 domain protein [Enterococcus faecium TX0133B]
 gi|314995980|ref|ZP_07861060.1| AP2 domain protein [Enterococcus faecium TX0133a01]
 gi|68196017|gb|EAN10449.1| Phage integrase [Enterococcus faecium DO]
 gi|257813516|gb|EEV42274.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257817552|gb|EEV44880.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|260075191|gb|EEW63504.1| phage integrase [Enterococcus faecium C68]
 gi|291595769|gb|EFF27057.1| phage integrase family protein [Enterococcus faecium E1679]
 gi|291598123|gb|EFF29226.1| phage integrase family protein [Enterococcus faecium U0317]
 gi|291604829|gb|EFF34310.1| phage integrase family protein [Enterococcus faecium E1162]
 gi|313589856|gb|EFR68701.1| AP2 domain protein [Enterococcus faecium TX0133a01]
 gi|313591437|gb|EFR70282.1| AP2 domain protein [Enterococcus faecium TX0133B]
 gi|313594515|gb|EFR73360.1| AP2 domain protein [Enterococcus faecium TX0133A]
 gi|313597925|gb|EFR76770.1| AP2 domain protein [Enterococcus faecium TX0133C]
 gi|313643267|gb|EFS07847.1| AP2 domain protein [Enterococcus faecium TX0133a04]
 gi|313644554|gb|EFS09134.1| AP2 domain protein [Enterococcus faecium TX0082]
          Length = 400

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/305 (17%), Positives = 106/305 (34%), Gaps = 23/305 (7%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ----LSYTEIRAFISKRRTQ 81
             ER +   T ++ +    + + F   +    IT   I      LS TE R    K   +
Sbjct: 84  WYERQVKSQTYENAQFIFEKRMQFFYHFRVRDITSHDIEDWLFELSQTESRNSRKKVNGE 143

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +    + R    +K  L    K  +  ++ + ++ +L   N         +   +++ +
Sbjct: 144 TLSKSYINRIRGHLKIVLDRAVKEGVIAKNPVEDVSSLPSENKKVEFWEHSEFQKVMNEL 203

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
                 + K        +  +L+  G+RI E  +L+  N+  +++T+ I+          
Sbjct: 204 -----KDDKIQTHHRKIVYEMLFYTGIRIGELEALSWSNVDFEKNTITIEKTLIYNTKDD 258

Query: 202 LLPSVRKAILEYYDLC-----------PFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQ 249
              S  K    Y  +             +DL   I    +         P   F  ++++
Sbjct: 259 WYFSTPKTKCAYRTIGLGKKLSLKLRQWYDLQKRIGNFEYVAQLDGTFTPPYSFANWLKE 318

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGD 308
             +  G+      H LRHS    L+       SIQ  LGH  +  T   Y ++ +K+   
Sbjct: 319 AAKKAGV-KPIKLHALRHSHVAFLIEQNIQPLSIQERLGHANIQITLGTYGHLYAKSDQQ 377

Query: 309 WMMEI 313
            +  I
Sbjct: 378 VVSAI 382


>gi|188526779|gb|ACD62271.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 50/94 (53%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 65  RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 124

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 125 SFATALLRSGYDIRTVQGLLGHSDVSTTMIYTHV 158


>gi|119952366|ref|YP_949908.1| phage integrase family protein [Arthrobacter aurescens TC1]
 gi|119951496|gb|ABM10406.1| phage integrase family domain protein [Arthrobacter aurescens TC1]
          Length = 333

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 109/300 (36%), Gaps = 43/300 (14%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR---------KITTES 111
             + + +  +  AF++++R   +   +       +  F +++  R          +  E 
Sbjct: 35  TPLWEATCADADAFLAQQRRLGLSVSTRAGKAGALAGFYEFVIARYEGTIRRATGVLVEQ 94

Query: 112 NILNM-----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW-IDARNSAILYLLYG 165
            I         +L K    P   ++ +  +L        +   K+   AR+     L   
Sbjct: 95  PIDEFNRQSGASLGKVRVPP---SDDEIDSLFTAWRGSVTQARKYRPAARDYFAASLWRR 151

Query: 166 CGLRISEALSLTPQNIMDDQST---LRIQ------GKGDKIRIVPLLPSVRKAILEYYDL 216
            GLRI+E + L  ++   D      L ++      G+G K R+VP +    + I  +   
Sbjct: 152 LGLRINETVMLDIRDWRPDLGEFGKLHVRHGKGSRGRGPKQRLVPAINGANQLIDWWLAE 211

Query: 217 CPFDLN---LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL---------STTAHT 264
                     +   PL    R         +     LRR LG+ +           T H 
Sbjct: 212 VRPQYGEDWADADAPLLPSERFDRDLDRCGRVGANALRRALGIQVEEWLPAWSGRMTPHV 271

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           LRH  A+ L + G D+++IQ +LGH  L+TT  Y +V      D +   ++     +  +
Sbjct: 272 LRHYCASSLYAAGMDIKAIQELLGHQWLATTSGYLHV----RSDHIERAWNSASDRVEAR 327


>gi|97954418|emb|CAJ43593.1| integrase [Enterobacteria phage PhiD145]
          Length = 331

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 100/272 (36%), Gaps = 32/272 (11%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-F 98
             D  +  +        ++ +    QL+   I  +        +   S+ R L+ +   F
Sbjct: 78  RGDIERGRLTTIIAKFAEMGVSRADQLTKKTITDYRVVMMNDGLKPASVNRHLAIMSGMF 137

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
            K +   +  + +    ++ L+++ +    L+ ++   L+  +     + T         
Sbjct: 138 TKLIDAGEYHSHNPFREVKRLREAVTEMAFLSSEEITRLLSMLDGDELNAT--------- 188

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
              +    G R SE  +L  ++I++   T  ++ K  K R +P+   + K I        
Sbjct: 189 --LVCLSTGGRWSEVSNLKAEHIINQMVTF-MKTKNGKRRTIPVSQDLIKRIKTKNSGRL 245

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
           F+ +        R ++   L+                       H LRH+FATH + NGG
Sbjct: 246 FNASYYKVRNALREVKPDLLDGQAV-------------------HVLRHTFATHFIMNGG 286

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           ++ ++Q ILGH  +  T  Y +       D +
Sbjct: 287 NIITLQRILGHSHIQQTMTYAHFAPDFLQDAV 318


>gi|302039501|ref|YP_003799823.1| putative phage integrase [Candidatus Nitrospira defluvii]
 gi|300607565|emb|CBK43898.1| putative Phage integrase [Candidatus Nitrospira defluvii]
          Length = 437

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/304 (15%), Positives = 102/304 (33%), Gaps = 31/304 (10%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +  + +L+ +E  R                +   L       +    ++ ++  +++A
Sbjct: 77  LERYTEVFLERIEHARK---------RTTFVDYTKILNRDILPTLRGLDLQDITREKVKA 127

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
                  +    ++++  +  + S L +  +  + T +  L     K    LP+     +
Sbjct: 128 MALAGLQRGQSPKTMQNIVRCLSSLLSHALEDNLVTVNPAL-----KPGKFLPKITKRHK 182

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG- 192
              L    +       K    R   +       GLR+ E L+L   +I      + +Q  
Sbjct: 183 ITPLTREEVALLIETAKAKLPRYYPLFLCAVRTGLRMGELLALQWGDIDWQGRFIEVQRN 242

Query: 193 ---------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLN 239
                    K  + R V +   + + + +       +       +    +F    G  L+
Sbjct: 243 YTHFRLTTPKSGESRRVDMSRELAQTLRDLLTERQIEAAASQWTDTPAWVFCSETGGLLH 302

Query: 240 PGVFQ-RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QI 297
           P   + R    L     L      H LRH+FA+ LL  G  L  ++  +GH  +  T  +
Sbjct: 303 PHNLRDRVFYGLLTKAKL-RKVRFHDLRHTFASLLLQQGESLVYVKEQMGHSSIQVTVDL 361

Query: 298 YTNV 301
           Y ++
Sbjct: 362 YGHL 365


>gi|189036180|gb|ACD75440.1| AMDV4_11 [uncultured virus]
          Length = 210

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 81/196 (41%), Gaps = 18/196 (9%)

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNS--AILYLLYGCGLRISEALSLTPQNIMDDQ 185
             ++++   +   +      + +  +       ++  LY  G RI E L + P +I    
Sbjct: 22  FFSDEEVQKIFLEISEKIVEDKRRSEKHKRYFLLVQFLYRTGARIDEVLIVKPSDINLGT 81

Query: 186 STLRIQG------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKP 237
           +++R++       K    R    +  +   + + Y     D+N+    + PLF      P
Sbjct: 82  NSIRMKTLKQGKDKNGIQREKYRIIPLHSELRDAYMQYLLDMNISTKSEDPLF------P 135

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           ++  V   Y ++++  LG      AH  RH+FA   + +   L  +Q  LGH  + TT I
Sbjct: 136 MSRQVVDLYFKKMQDKLG--FKVHAHKFRHTFAVKAIMDNVPLNVLQQWLGHSSIFTTSI 193

Query: 298 YTNVNSKNGGDWMMEI 313
           YT +   +  ++M  I
Sbjct: 194 YTQITGMDTSEFMGRI 209


>gi|288919550|ref|ZP_06413880.1| integrase family protein [Frankia sp. EUN1f]
 gi|288349056|gb|EFC83303.1| integrase family protein [Frankia sp. EUN1f]
          Length = 422

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 67/330 (20%), Positives = 118/330 (35%), Gaps = 67/330 (20%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI----------------- 75
             T  +YE   R +LI         +  + + +LS  ++R FI                 
Sbjct: 102 PNTYVTYEKAVRLYLI-------PGLGKKRLNRLSGADVRQFIRRTETTCRCCEMGRDKA 154

Query: 76  ---SKRR--------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
               +RR         ++   R ++   + +++ L+   + ++   +    ++       
Sbjct: 155 RPEEERRCCAVGQCCNRRPSKRQVQVVHAVLRNALQAAVREELIRRNVAKLVQVSTPRYG 214

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           + R L  +QA  L+D          +    R  A+L L    G+R  E L L   +I  D
Sbjct: 215 VDRGLTVEQAHRLLD----------EAAGDRLYALLVLALFLGMRRGELLGLQWSDIDTD 264

Query: 185 QSTLRIQGK---------------GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
           + TL I+                  D  R +PLL  V  A+ E+  L   +     +  +
Sbjct: 265 RETLTIRHTLQRVGGELRLLPPKTEDSERTLPLLGLVADALTEHRKLQQAEREAAGERWV 324

Query: 230 -----FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
                F    G  + P   +R+   LRR  GL      H LRH+  T LL  G     ++
Sbjct: 325 TTDHVFTTKIGTAIEPDNLRRFWMPLRRAAGLD-GVVFHGLRHTCVTLLLDLGVPPHIVR 383

Query: 285 SILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
            I GH  +  T  IY + +       + ++
Sbjct: 384 DIAGHSAIEVTMTIYAHASMGEKRRALGKL 413


>gi|260662343|ref|ZP_05863238.1| site-specific recombinase [Lactobacillus fermentum 28-3-CHN]
 gi|260553034|gb|EEX25977.1| site-specific recombinase [Lactobacillus fermentum 28-3-CHN]
          Length = 394

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 104/269 (38%), Gaps = 30/269 (11%)

Query: 63  IRQLSYTEIRAF-ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           + +++  +++ + +        G   +  ++  +    +      +  E+    + N+K+
Sbjct: 129 LSKITAFDVQKWQLGYLEDHANGTTRVAHTM--LGKIFERAILMSLMRENPAKIVGNVKR 186

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           S        + Q   ++D      + +  +    +  IL+ L+  G+R  EA +LT +++
Sbjct: 187 SQDEVEFWTKDQFQKVIDQ-----TSKDTYTHRFDFIILWFLFMTGMRSGEAKALTWKDV 241

Query: 182 MDDQSTLRIQGK----------------GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
                T+ I                      +R++ + P     + E+Y     D  L  
Sbjct: 242 DLKAGTIDINKSLLYKSVNNYKLGKTKNRQSMRVISIDPQTIDYLEEWY----EDQRLMT 297

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
           +        G PLN       +        +P + TAH LRHS A+ L+S G +   I+ 
Sbjct: 298 RSEFVLSQDGAPLNSTYINDIVHDYGDLAKVP-TVTAHALRHSHASLLISLGENPLVIRD 356

Query: 286 ILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
            LGH  + TT +IY ++  K+  +    +
Sbjct: 357 RLGHKDVRTTLEIYGHLYPKSDIEASKRL 385


>gi|237745531|ref|ZP_04576011.1| integrase [Oxalobacter formigenes HOxBLS]
 gi|229376882|gb|EEO26973.1| integrase [Oxalobacter formigenes HOxBLS]
          Length = 321

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 100/242 (41%), Gaps = 31/242 (12%)

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           R +    +++ +   ++K  LS +++   Y  K         + +  +K        ++ 
Sbjct: 110 RDYREAEQSR-VKPATIKNKLSYLRAACNYAHKFHKFEAPPPIELPKVKNERQ--SFIDR 166

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           ++ + L  +     +           A++ + +  G+R+ E +S+  ++ + D     I 
Sbjct: 167 REMIMLSRSFRGLGAEREA------RALVRIAFYSGMRLGEMMSIGRKSALLDDGFNLID 220

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            K  + R VP+ P +  A+                LP+    +         Q  IR+  
Sbjct: 221 TKNGEDRYVPMHPKITTAVKY--------------LPISYSKKWM-------QVLIRRAM 259

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             +GL      H LRHS AT L+++  DL  ++ +LGH  + TTQ Y++V  K   D++ 
Sbjct: 260 DNVGL-KEIRLHDLRHSTATSLINSEKDLYLVKDLLGHKDIRTTQRYSHVLKKTLQDFVR 318

Query: 312 EI 313
           +I
Sbjct: 319 KI 320


>gi|222153932|ref|YP_002563109.1| phage integrase [Streptococcus uberis 0140J]
 gi|222114745|emb|CAR43892.1| phage integrase [Streptococcus uberis 0140J]
          Length = 388

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/300 (16%), Positives = 107/300 (35%), Gaps = 25/300 (8%)

Query: 33  KLTLQ-SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR- 90
           K T++ + + +TR+ L            +  +       I   ++ R  +      L   
Sbjct: 82  KHTVKPNSQDNTRKLLYNHILPLFGDYKLSKLSTPLIQSIINKLADRTNKGEKGSYLHYD 141

Query: 91  SLSGI-KSFLKYLKKRKITTESNILNMRNL----KKSNSLPRALNEKQALTLVDNVLLHT 145
            ++ + K  L+Y    +    +    +       K      +     +    +D +  + 
Sbjct: 142 KINALNKRILQYGVVMQAIPFNPAREVILPRNTQKSKRQKVKHFENHELRQFLDYM--NN 199

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK------------ 193
               ++  +    +   L   G RI+EAL+L  ++I  D + + I               
Sbjct: 200 LDLDRYRYSYELTLYKFLLATGCRINEALALNWEDIDLDNAIIHITKTLNYKQEINSPKS 259

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
               R + +       +  Y  +   +       +  +F     +  N    Q  +R   
Sbjct: 260 KASYRDISIDSQTVNMLKAYQRMQIQEAWKLGRSEKVVFSDFIHEYPNNRTLQTRLRTHF 319

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWM 310
           +  G+P +   H  RH+ A+ LL++G   + +Q+ LGH  +S T  IY++++ +N    +
Sbjct: 320 KNAGVP-NIGFHGFRHTHASLLLNSGIPYKELQTRLGHSTISMTMDIYSHLSKENEKKAV 378


>gi|282859347|ref|ZP_06268457.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282587879|gb|EFB93074.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 404

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 98/273 (35%), Gaps = 25/273 (9%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKS 97
           Y         F+      K++     QL+   I  F           + +   + + +K+
Sbjct: 132 YHSTRTHLQNFIKSRY--KVSDLAFSQLTEQFIYDFQQYFMGICGFQESTFYNAATHLKT 189

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
             +   +  +        ++  K    LP+AL+      L++        E +       
Sbjct: 190 VCRLAYREGLADILLFDKVKVSKGDKKLPKALDRCSLDKLMNIQFGELEEEMETA----R 245

Query: 158 AILYLLYGCGLRISEALSLTPQNIM-DDQSTLRI---QGKGDKIRIVPLLPSVRKAILEY 213
            +       G    + + L+  +++ DD+ +L +   + K   +  + LLP   + I +Y
Sbjct: 246 DLFVFACHTGAAYCDLMELSRLHLVRDDEGSLWLKFNRQKTGVLCRIKLLPEAIRIIEKY 305

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                  L                +    +Q Y++ LR   G+    T HT RH+FAT +
Sbjct: 306 KSDERERL-------------LPQMKYATYQSYLKALRLRAGIAFPFTTHTARHTFATLI 352

Query: 274 -LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            L  G  + ++  +LGH  +S T+ Y  V  + 
Sbjct: 353 TLEQGVPIETVSKMLGHSNVSMTERYAKVTPQK 385


>gi|262046043|ref|ZP_06019007.1| prophage integrase [Lactobacillus crispatus MV-3A-US]
 gi|260574002|gb|EEX30558.1| prophage integrase [Lactobacillus crispatus MV-3A-US]
          Length = 393

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/287 (18%), Positives = 112/287 (39%), Gaps = 48/287 (16%)

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
             +   +++ +  K  T+ +  R +   +S ++S  +Y  +    ++++I  +   KK+ 
Sbjct: 113 DSILVKDLQKWADKLATELVNYRPV---ISIMRSLYEYGMRLGYISDNSISRIIIPKKTT 169

Query: 124 SLPR-----ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
              R       ++++  T +D          K ++        LL   G+R  EAL+LT 
Sbjct: 170 RKRRNVEDNVYSKEELDTFLDV--------AKQVNQCVYTYFKLLASTGMRKGEALALTW 221

Query: 179 QNIMDDQSTLRIQ---------------GKGDKIRIVPLLPSVRKAILEYYD-------L 216
            +I    +T+ +                   +  R +PL  ++++ +L++          
Sbjct: 222 NDIDLVNNTISVNKTLTSVDHKLILSSPKTKNSRRSIPLSANLKQVLLDHRKSEKIVSVK 281

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR--------YLGLPLSTTAHTLRHS 268
               LN N       G   + +        ++  ++                + H  RH+
Sbjct: 282 LFHRLNGNYWSLSQPGDWLRDVYAKDHALNVKYAKKYKLDDSYVRAKDLRHISIHGFRHT 341

Query: 269 FATHLLSN-GGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           FAT L+ N     +++Q +LGH  +  T  IYT++N+KN  D +  I
Sbjct: 342 FATLLIENTNVKPKTVQMLLGHANIKMTLDIYTHINNKNKEDAINSI 388


>gi|169346819|ref|ZP_02865770.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium perfringens C str. JGS1495]
 gi|169297101|gb|EDS79223.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium perfringens C str. JGS1495]
          Length = 379

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/301 (18%), Positives = 107/301 (35%), Gaps = 42/301 (13%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
            T + Y       L  +  + +  +    ++ LS   ++ F++K+    +   SL     
Sbjct: 83  NTQKYY-------LGIIQNHLKPILGSYKLKSLSPNVLQEFLNKKYISGLSKSSLSNFYG 135

Query: 94  GIKSFLKYLKK-RKITTESNILNMRNLKKSNSL-----PRALNEKQALTLVDNVLLHTSH 147
            +   LK      K   E+ +  ++  K SN+       + L   +   +++        
Sbjct: 136 VLSGSLKMAVYPYKFIKENPMQYVKIPKNSNTKVTQEKIKVLTLDEFKIILNRF------ 189

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK-------------- 193
                 +     L + +  GLR  E  +LT  NI  D  TL ++                
Sbjct: 190 ---PFGSNFYIPLQIAFNTGLRGGEVCALTWDNIDFDNKTLTVEHTLIEKGNGIFELGTP 246

Query: 194 --GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ-RYIRQL 250
                 R + L  ++   + ++      +     +            N  +     ++ L
Sbjct: 247 KTKSSFRTIALGDTLINILKKHRTFQKENKLKYGEYYSNSNYICTKENGQLITTSSLKYL 306

Query: 251 RRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGG 307
            R +   L +    H LRH+ AT LL  G + + IQ  LGH +LSTT   Y++V +K   
Sbjct: 307 SRVVNYELLIDFNFHALRHTHATMLLEGGANFKDIQKRLGHSKLSTTMDTYSHVTNKITT 366

Query: 308 D 308
           D
Sbjct: 367 D 367


>gi|325860402|ref|ZP_08173514.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325482060|gb|EGC85081.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 404

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 107/283 (37%), Gaps = 25/283 (8%)

Query: 33  KLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           + ++ +Y    ++   F+   Y    +    + +    E+RAF            +  R 
Sbjct: 126 EGSMSAYYSTRKRLQEFIQKKYHVSDLAFSQLTESFIYELRAF--CLSELGYQQSTFFRV 183

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
            + +K+  +   +  +        +   +     P+AL+++     +D        E + 
Sbjct: 184 AADLKTVCRLAYREGLADTLLFDKVHIERGEKKAPKALDKEA----LDKFKALRFDELEK 239

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRI---QGKGDKIRIVPLLPSVR 207
                  +       G    + + L+ ++++ DD  +L +   + K   +  + LLP   
Sbjct: 240 EMETARDVFLFACYTGAAYCDLMELSKKHLVRDDNGSLWLKFNRQKTGVLCRIKLLPEAV 299

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + I + Y      L   I+ P             ++Q  ++ LR   G+    T+HT RH
Sbjct: 300 RLIEKMYSDERETLLPFIKYP-------------IYQSCLKALRLRAGISFPFTSHTARH 346

Query: 268 SFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           +FAT + L  G  + ++  +LGH  +S T+ Y  V  +   + 
Sbjct: 347 TFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQKLFEE 389


>gi|325568652|ref|ZP_08144945.1| bacteriophage integrase [Enterococcus casseliflavus ATCC 12755]
 gi|325157690|gb|EGC69846.1| bacteriophage integrase [Enterococcus casseliflavus ATCC 12755]
          Length = 399

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 84/241 (34%), Gaps = 37/241 (15%)

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPR------ALNEKQALTLVDNVLLHTSHETK 150
           S   Y    ++   + +  +   KK   +          + +Q LT +  V  + S +  
Sbjct: 138 SVFNYAINIRLLNNNPMDGVIRPKKQQKVDEEDYIAPFYDREQLLTFLSVVKENYSEQL- 196

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----------------GKG 194
                   +  +L   GLR  E  +L  ++I  D+ TL ++                   
Sbjct: 197 ------FVMFRILGYTGLRKGELHALRWKDIDFDKKTLTVKQTLATVQNWELVFQPPKTR 250

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDL------NLNIQLPLFRGIRGKPLNPGVFQRYIR 248
             IR + L       I ++       L      +L+ +  LF     KPL        + 
Sbjct: 251 KSIRTISLDNETLGLIKKWKLHQQKFLFQFGINSLSQEQLLFPSTENKPLYLDYLNHNLS 310

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGG 307
           ++ +   LP   T H  RH+  + L   G  ++ +Q  +GH  + TT  IY +V  +   
Sbjct: 311 KILKENRLPK-MTVHGFRHTHCSLLFEAGVSIKDVQERMGHTDIKTTMNIYAHVTEQRKE 369

Query: 308 D 308
            
Sbjct: 370 K 370


>gi|326790507|ref|YP_004308328.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326541271|gb|ADZ83130.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 392

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/310 (14%), Positives = 110/310 (35%), Gaps = 54/310 (17%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           R   ++     +  +  + I+++   +++ F + +    +  +S    LS +K  L    
Sbjct: 90  RYMSLYNTHIKDSALGKRDIQKILQRDVQQFFNSKTE--LSSKS----LSMLKYLLNQSF 143

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
              I   +  + + N  K  +LP++   ++ + ++       +      ++    +  + 
Sbjct: 144 DHGI--ANQFIRI-NPMKKITLPKSTYVEKEIEVL-THEEQKAFMGVVNESFYKMLFTVA 199

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQ------------------------GKGDKIRI 199
              G+R+ E ++L   N+      + ++                             IR 
Sbjct: 200 LHTGMRVGEIMALKWHNVDLIDHMIHVKESSRLVKEYDSEGNGEDKVITKSPKTKAGIRD 259

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-- 257
           +P+ PS+ + +  Y      + N      +F+  +G  +      +  + L     +   
Sbjct: 260 IPIHPSLSEELTAY----KAEHNGQDDDYVFKNSKGNQIKYDSIAKAHKLLCEKAKIRPY 315

Query: 258 -------------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
                           T H +RHSFAT L+  G D++++  +LGH  +  T   Y +   
Sbjct: 316 TEIGSNGESIIKYKGITFHGIRHSFATRLIEQGVDVKTVSQLLGHTDVKITLNRYVHSTD 375

Query: 304 KNGGDWMMEI 313
               D + ++
Sbjct: 376 DTKKDAIHKL 385


>gi|242241952|ref|ZP_04796397.1| integrase [Staphylococcus epidermidis W23144]
 gi|242234583|gb|EES36895.1| integrase [Staphylococcus epidermidis W23144]
          Length = 405

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 62/288 (21%), Positives = 120/288 (41%), Gaps = 39/288 (13%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKK 121
           ++ ++   ++  +       +  + +K ++S I++ +KY++++ K+T  S + ++   KK
Sbjct: 114 VKNMNSDVVQKLVDDSVKDNLSHKVVKDAMSIIRNIMKYIQRKYKLTDISYLDDIVIPKK 173

Query: 122 SNSLPRA-------LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC------GL 168
           + +           L   +  ++VDN  LH    +K       + +   Y        G+
Sbjct: 174 ATTREEVKAKRENYLEMDEVKSIVDN--LHEIANSKRAGYTKRSFIMTAYIMEFQALNGM 231

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIR----------------------IVPLLPSV 206
           RI E L++ P NI  D+ TL I G                                   +
Sbjct: 232 RIGELLAIQPNNIDFDKKTLEIDGTIHWRNEGNAVGFKDTTKTESSYRTISLTTRSCDIL 291

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           RK +LE      ++     +  +F   RG P++     R ++Q    +G+    T+HT+R
Sbjct: 292 RKVMLENKKAIQWESMYQDRGFIFTNYRGNPMSLSTINRNMQQSANNVGIRKHITSHTMR 351

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           HS  + L   G  L++I   +GH    TT QIY++V  +   D M ++
Sbjct: 352 HSHISLLSQLGISLKAIMERVGHTDHKTTLQIYSHVTEQMDKDMMNKL 399


>gi|66395166|ref|YP_239446.1| ORF002 [Staphylococcus phage PT1028]
 gi|62635520|gb|AAX90631.1| ORF002 [Staphylococcus phage PT1028]
          Length = 404

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 62/351 (17%), Positives = 130/351 (37%), Gaps = 47/351 (13%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ++ N+  ++ +         WL++ +   G    T++  +          A   +  I  
Sbjct: 58  LKHNSTKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKS--------NANTVKNAIDS 109

Query: 61  QT-IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRN 118
           +  I ++++T ++  I     +      ++  +  I+S  KY  K   +   S +  +  
Sbjct: 110 KVLISKITHTYLQN-IINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDI 168

Query: 119 LKKSNSLPR-------ALNEKQALTLVDNVLLHTSHETKWIDARNS----AILYLLYGCG 167
            KK+ +           L + +   L++       H+      RN     A++      G
Sbjct: 169 PKKAQTRNELQAKRNNYLEDSEVKELLECFDYLIKHKRHATRKRNYEMVKALVEFQINNG 228

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRI------------------------VPLL 203
           +RI E L++   N+  +  TL I G  + +                             +
Sbjct: 229 MRIGELLAIKTDNVDVENKTLEIDGTINWVTDVETGAFGVKETTKTSKSYRTIGLTTQSI 288

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
             ++K +LE      ++     +  +F    G P++       I++      +    T H
Sbjct: 289 NLLKKLMLENKKENQWNDKFTDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTH 348

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           TLRH+  + L   G +L++IQ  +GH    TT +IYT+V  +   D M ++
Sbjct: 349 TLRHTHISTLAQLGINLKAIQDRVGHSDYKTTLEIYTHVTDQMAKDMMNKL 399


>gi|332878533|ref|ZP_08446254.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332683628|gb|EGJ56504.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 389

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/275 (18%), Positives = 102/275 (37%), Gaps = 25/275 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           S  T   Y+   R+   F+   Y  + I ++ I  +  T+   ++  R      + +  +
Sbjct: 130 SAATYAKYDRCMRRLEAFMQSKYRIKDIALKEITHVFITDFETYL--RTECGCNENTSAK 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +   +  +   K          +N + ++        L E++    +  +L       +
Sbjct: 188 FMQTFRMIIIAAKNNGWIFADPFVNYK-IRLKRVDRGYLTEQE----LQKILKKKFTCKR 242

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVR 207
               R+  I       GL   +  +LT  NI    D    +    +     +   L  V 
Sbjct: 243 LEQVRDVFIFACF--TGLAYIDVRNLTKDNIRTSFDGNPWIMTARQKTDTAVNVPLLKVP 300

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +AIL+ Y           +  L  G+    L+      Y++++    G+  + T H  RH
Sbjct: 301 QAILKKY-----------EGKLPNGLLLPVLSNQKLNSYLKEIGDLCGISKNITFHLARH 349

Query: 268 SFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +FAT + L+ G  + ++  +LGH  + TTQIY   
Sbjct: 350 TFATTMTLAKGVPIETVSKMLGHTNIQTTQIYARA 384


>gi|310826778|ref|YP_003959135.1| integrase [Eubacterium limosum KIST612]
 gi|308738512|gb|ADO36172.1| integrase [Eubacterium limosum KIST612]
          Length = 336

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/317 (17%), Positives = 125/317 (39%), Gaps = 39/317 (12%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + + LE +  L   T ++Y     ++L  +          ++++ +S  +I+ F+S  + 
Sbjct: 21  FDKWLESKNHLKAQTKRTYVQLINRYLRPV-------FGEKSVKTISEEDIQRFVSDIQ- 72

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  +++      +++  +   + KI   +        +K     +AL+ K    + + 
Sbjct: 73  KDLSAKTVHEVYRCLRAVFELAIENKIIERNPCEKTVLPQKEKVKAKALSIKDQEKIENA 132

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-------- 192
           +   +      I    +  L         +SE ++L  Q+I  +++ + I+         
Sbjct: 133 LGQSSKALDIAILLALNLGLR--------LSEVIALRWQDIRFNENIVIIRHSMERVPTG 184

Query: 193 -------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
                             R +PL     K + EY       +       +     G   N
Sbjct: 185 DGNKTVAHLGTPKTQSSQRKIPLEFEFSKCLKEY-FQKQTSVQKKPDAFVVGKKDGNSYN 243

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIY 298
               +R+ ++  + L +  + T H+LRHSFAT  + +G  ++ I ++LGH + + TT IY
Sbjct: 244 GRTVERHFKKRLKELMISETYTFHSLRHSFATRAMESGVVIKVISALLGHSQTATTTDIY 303

Query: 299 TNVNSKNGGDWMMEIYD 315
            +++       MM++ D
Sbjct: 304 LHLSESFIRQEMMKMKD 320


>gi|118477881|ref|YP_895032.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis str. Al Hakam]
 gi|229184697|ref|ZP_04311897.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BGSC 6E1]
 gi|118417106|gb|ABK85525.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis str. Al Hakam]
 gi|228598801|gb|EEK56421.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BGSC 6E1]
          Length = 292

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/291 (17%), Positives = 100/291 (34%), Gaps = 30/291 (10%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
                 +  F+  +    I +  + +L+   I+        + I + S+      +KS L
Sbjct: 5   RSTFVGYRAFINQHIIPSIGMVALHKLNVMHIQKCYKTAIDRGIANNSVLLMHRILKSAL 64

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
               K+ I + +        KK  +  +   E++        LLH+      I       
Sbjct: 65  NLAVKQNIISRNPADFAEIPKKERTSIQTWTEEEVKKF----LLHSQESRYHIGY----- 115

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI-------------RIVPLLPSV 206
             L    G+R+ E L L  Q++  ++ T+ I                    R +P+    
Sbjct: 116 -LLAITTGMRMGEVLGLRWQDVDFEKHTVTINQTSGHDNKIKKTAKTNSSKRTIPVPKET 174

Query: 207 RKAILEYYDLCPFDL-----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            +++ ++  L   +             +     G  +    F++   +     G+     
Sbjct: 175 IESLKKHKVLINQEKLRLGSAYQDFDLINCNEFGMIIKKANFRKNFIRAIHNAGV-KEIK 233

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMM 311
            H LRH+ AT LL  G + + I   LGH  +S T  +Y++V      + + 
Sbjct: 234 FHDLRHTHATILLKQGVNPKIISERLGHTDISMTLSVYSHVLPNMQEEAVK 284


>gi|239904755|ref|YP_002951493.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239794618|dbj|BAH73607.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 411

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 112/285 (39%), Gaps = 28/285 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF--ISKR 78
           +L +L +  G ++  + S E   ++    +         +  ++ +    IR    +S++
Sbjct: 131 YLDHLRVS-GRTEKHIASLENLLKRMFFDILGKDTPVAGMTYLKDI-VPFIRQMQGVSQQ 188

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             +     S+ R    + +   +  + ++ ++S    M+  KK+   PR  + +  +  +
Sbjct: 189 TGKPRSQASVNRYCDYVDAIFNFGMEMELISKSP---MKGRKKAKEQPR--DVQIGIDDL 243

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRI--SEALSLTPQNIMDDQSTLRIQGKGDK 196
             ++ H     +W        + + +  G R   SE  +L  +++  D  T+RI     K
Sbjct: 244 KRIMDHAESHIRWA-------MEVCFNLGTRPGPSELFALRWEHVDFDAGTVRIYATKTK 296

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
                        + E + +   ++    Q        GKPL     +R         G+
Sbjct: 297 TFRTVP-------VTESFLIRLREMRDQSQSGFIVEYEGKPLT--TIRRSFNTACEKAGI 347

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTN 300
            +    + LRH FAT +L+NG DL ++  ++GH  +  T  +Y +
Sbjct: 348 TVDVRMYDLRHLFATTMLANGADLAAVSKLMGHSTVKMTADVYYH 392


>gi|189463399|ref|ZP_03012184.1| hypothetical protein BACCOP_04118 [Bacteroides coprocola DSM 17136]
 gi|189429828|gb|EDU98812.1| hypothetical protein BACCOP_04118 [Bacteroides coprocola DSM 17136]
          Length = 385

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/253 (20%), Positives = 103/253 (40%), Gaps = 15/253 (5%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT--TESNILNMRNL 119
           T +Q+ Y  + +F    + +K+G  ++ + L  I++ +    ++ I    +S     + +
Sbjct: 143 TFKQMDYKLLLSFEQFMKNKKLGINTIAKHLRHIRTIINEAVRQGIIAKEDSPFTEYK-I 201

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K + S    L  ++   L    L   S +   +     A L+  Y  GLR S+ +S+  Q
Sbjct: 202 KTTESHHTYLLPEELDKLEHINL---SRKKNTLRHTLDAFLFCCY-TGLRYSDFISMKKQ 257

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           N++     L +  K  K   V  LP       +   +     ++     +          
Sbjct: 258 NLIQTDKELWLVFKSQKTGTVTQLPLGYLFQGKAIRILYHYPDIEEFFHIKPN------- 310

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                + + ++ +  G+    + HT RH+ AT L+  G  L ++Q +LGH  + TTQ+Y 
Sbjct: 311 -ASVNKELIRIGKLAGITKHFSFHTARHTNATLLIYKGVQLSTVQKLLGHRNIKTTQVYG 369

Query: 300 NVNSKNGGDWMME 312
            V  +     + +
Sbjct: 370 EVLPQTIIKELKK 382


>gi|114567760|ref|YP_754914.1| phage integrase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338695|gb|ABI69543.1| phage integrase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 305

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/264 (18%), Positives = 97/264 (36%), Gaps = 40/264 (15%)

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +  R+++     + S L    K  +   +     +  ++     R L E+Q      
Sbjct: 40  RGGLSARTVELIHIVLHSALSQAIKEGLVVRNVSEATKRPRREKKEMRVLTEEQTR---- 95

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------- 191
              L     T+ +         +  G G+R  E L+L  +N+  ++  +R+Q        
Sbjct: 96  ---LQAVLNTERLG----TAFLVDLGTGMRCGELLALKWENVDLNEGVIRVQQSLTRIRV 148

Query: 192 --------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDL-----NLNIQLPLFRG 232
                               R +P+  SV  A+  +      +        N    +F  
Sbjct: 149 EDSSLKTELRFQPLKTVKSRRSIPIPQSVIAALKSHKSRQNQEKLKAGAAYNDLGLVFCT 208

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
             G+P++P    R   +L    G+P   T H++RHS+AT LL      + +Q ++GH ++
Sbjct: 209 ELGQPIDPRNLTRTFNRLLERAGIPK-ATLHSMRHSYATRLLEMNEHPKVVQELMGHSQI 267

Query: 293 STT-QIYTNVNSKNGGDWMMEIYD 315
           S T   Y++V  +       ++ D
Sbjct: 268 SMTLDTYSHVMPEIKQAAAAKLDD 291


>gi|224024631|ref|ZP_03642997.1| hypothetical protein BACCOPRO_01358 [Bacteroides coprophilus DSM
           18228]
 gi|224017853|gb|EEF75865.1| hypothetical protein BACCOPRO_01358 [Bacteroides coprophilus DSM
           18228]
          Length = 410

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/292 (18%), Positives = 114/292 (39%), Gaps = 22/292 (7%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           +  + +T++ YE   R     +     +      + +++   +RAF    +T+K     +
Sbjct: 130 KDYALITVRRYESCKRYLAELIRQKFGKD--DLPLVEVNGELVRAFEFYLKTEKECQQNT 187

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           + R +  +K         +   +   + ++  +K   +   L   + LT+      H   
Sbjct: 188 VIRYMKCLKKITNLALANEWIAKDPFIGIKFHEKEV-IREFLTMDELLTIY-----HKEF 241

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRIVPLLP-- 204
             + I       ++  +  GL   +   L+P++I+ D+   L I+    K + +  +P  
Sbjct: 242 PLERIAVVRDVFIFAAF-TGLAFIDVQQLSPEHIVKDNNGNLWIRKPRQKTKNMCNIPLL 300

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            +   IL  Y   P      + LP+    +           Y++++     +  + T HT
Sbjct: 301 DIPLEILRKYADYPACKKKGVLLPVPCNQKM--------NSYLKEIADLCLIKKNLTTHT 352

Query: 265 LRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            RHS+AT   L+NG  + ++  +LGH  +  TQ Y  V   +    M  + D
Sbjct: 353 ARHSYATSVCLANGVSIENVAKMLGHSNIKMTQHYARVLDSSILKDMNNVRD 404


>gi|330752707|emb|CBL88171.1| putative transposase [uncultured Leeuwenhoekiella sp.]
          Length = 417

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 112/298 (37%), Gaps = 31/298 (10%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           L   TL++Y    R    +L      K     ++QLSY  I  F    R  K  +RS   
Sbjct: 125 LKPGTLKNYFTTERYIKRYLKHKL--KTNDVFLKQLSYKFIIDFEQFLRNGKSINRSQPL 182

Query: 91  SLSG-------IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
             +G       +K  +    + +   +   +   +LK +      L++ +   L    L 
Sbjct: 183 KNNGVMKHLERLKKMMNLALRLEWIEKDPFVRF-SLKFTKHQRAFLSQSELEVLESGQLS 241

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----MDDQSTLRIQGKGDKIRI 199
              H+          +       GL   +   L+  +I      D      + K D+   
Sbjct: 242 KGIHQKT------RDVFVFACYTGLSYIDVKLLSDDHIVRGIDGDYWIFTKREKNDEAVK 295

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +PLL      + +Y      +      LP+F   +          +Y++++   L +   
Sbjct: 296 IPLLDKALYILKKYDQ--GTENKSEKLLPVFSNQK--------INKYLKEVAAILKINKK 345

Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            T H  RH+FAT + LSNG  + ++  +LGH +LSTTQIY  V  +     M  + ++
Sbjct: 346 LTFHAARHTFATTVTLSNGVPIETVSKLLGHTKLSTTQIYARVIEQKVSSDMRSLRNK 403


>gi|324324345|gb|ADY19605.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 374

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/313 (15%), Positives = 108/313 (34%), Gaps = 38/313 (12%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           +  L +  Q WL+N   +R +   T  +Y       +I +       I    ++ L    
Sbjct: 62  NLTLSEYLQEWLENTAKQR-VRDTTFINYRRAVNSRIIPV-------IGSHKLKDLKPLH 113

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
            + F+     +++  + ++     +K  L+   K ++  ++   ++   +    +    +
Sbjct: 114 GQRFVKSLIDEELSPKYIEYIFIVLKGALEDAVKWELLYKNPFEHVEIPRPRKVVNNTWS 173

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            ++  T +           K+ +     +  L    G+R  E L L  +N+   +  + +
Sbjct: 174 IEETKTFLAY--------AKFDNPIYYHLFSLALNTGMRRGELLGLKWKNVDLVEGKISV 225

Query: 191 Q---------------GKGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLF 230
                                 R++ +  S+ K +  Y                    +F
Sbjct: 226 TETLIYDELGFRFTEPKTSGSKRLISIDQSLCKELKSYKAKQNEFKLAIGKAYEDNDLVF 285

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
               G+P+ P        +  +   +P     H LRH+ AT LL  G + + +   LGH 
Sbjct: 286 SREDGRPIYPRTLTTVFERFIKTAQVPK-IRFHDLRHTHATLLLKLGINPKVVSERLGHN 344

Query: 291 RLSTT-QIYTNVN 302
            + TT   Y++V 
Sbjct: 345 SIKTTLDTYSHVT 357


>gi|211922734|dbj|BAG81000.1| integrase [Klebsiella oxytoca]
          Length = 169

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 79/187 (42%), Gaps = 27/187 (14%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVNWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ 191
             T+ ++
Sbjct: 162 HGTIIVR 168


>gi|27462653|gb|AAO15533.1|AF458080_1 class 1 integrase INT1 [Klebsiella pneumoniae]
 gi|158268290|gb|ABW25063.1| DNA integrase [Pseudomonas aeruginosa]
          Length = 168

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 79/187 (42%), Gaps = 27/187 (14%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVNWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ 191
             T+ ++
Sbjct: 162 HGTIIVR 168


>gi|227461214|gb|ACP39551.1| putative integron integrase [uncultured microorganism]
          Length = 294

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/276 (20%), Positives = 95/276 (34%), Gaps = 63/276 (22%)

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT------------ESNILN---MRNLKKS 122
            R +    R+ +  +  I+ F+ +  KR                    +    +    +S
Sbjct: 30  LRAKHYSYRTEQAYVHWIRRFVLFHGKRHPREMRTAEVERFLLGAGPAVAGKMLPRAPRS 89

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             LP  L   +  +++  V          +      +L            AL L  ++++
Sbjct: 90  RRLPVVLGRSEVRSILAFVEGTPGLVAGLLYGGGLRLLE-----------ALRLRVKDVV 138

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC---PFDLNLNIQLP----------- 228
            ++STL I+        V +LP      L  +       FDL      P           
Sbjct: 139 FERSTLVIRDAKGGKDRVTILPDAMAMPLRAHVARLHIWFDLERQRGAPGVSVPGALARK 198

Query: 229 ------------LFRGIRGKP-----------LNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
                       +F                  L+    QR ++Q  R  G+    + HT 
Sbjct: 199 YRGVATQWGWQYIFPSRNLCRDPYSGQWIRHHLHEQTVQRAVKQAVRRAGIQQPASCHTF 258

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           RH FATHLL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 259 RHCFATHLLEDGYDIRTVQELLGHSDVKTTMIYTHV 294


>gi|239621712|ref|ZP_04664743.1| phage family integrase [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239515587|gb|EEQ55454.1| phage family integrase [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 309

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 84/213 (39%), Gaps = 22/213 (10%)

Query: 103 KKRKITTESNILN--MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
               +          ++  +      + LN+ +   ++ ++ L       W       ++
Sbjct: 91  VDEGLIQRDPTRKAIIKGKQPRQKKVKYLNQFELHAVLADLKLDPIPNWDW-------LI 143

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY-- 213
            L+   GLR SEAL LTP +      TL +    +       +P     SVRK  L++  
Sbjct: 144 LLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWNYKNGGGFVPTKNASSVRKVQLDWQL 203

Query: 214 -YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
              L     +L    P+F   +            + +  +  G+P+  + H LRH+ A+ 
Sbjct: 204 IMQLSVLLKSLPGDKPIFVDGKVYNSTANGI---LARHCKQAGVPV-ISIHGLRHTHASL 259

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           LL  G  + S+   LGH  ++TTQ IY +V  +
Sbjct: 260 LLFAGVSIASVSKRLGHASMNTTQEIYLHVIRE 292


>gi|315575528|gb|EFU87719.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309B]
 gi|315580031|gb|EFU92222.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309A]
          Length = 408

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/318 (17%), Positives = 104/318 (32%), Gaps = 46/318 (14%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--------KIGDRSLKR 90
           Y    R ++          I    + +    + + FI+   T          +   ++K 
Sbjct: 94  YRDAIRMYIDPY-------IGNYQLNKYKPADHQKFINSLFTNKELGKSKNGLSYNTVKI 146

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
             + + +  K  +K      +    +              +K     ++   L       
Sbjct: 147 VNAALSNAFKKAQKLGYIKSNPTYFVEFPLDKVKEKTNKEKKLEFYTLEQENLFLDTARN 206

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-----RIQGKGDK--------- 196
           + D        +++  GLR  E ++L   N     + L     R+  K            
Sbjct: 207 FDDFMWYVFFLIIFDLGLRKGEVMALRWFNFDFRDNILTFDKQRLYRKEQPGQVILDDVK 266

Query: 197 ----IRIVPLLPSVRKAILEYYDLCP------FDLNLNIQLPLFRGIRGK----PLNPGV 242
                R + +   VR ++LE Y +          +  + Q  LF   RGK    P+    
Sbjct: 267 TDAGKRSLKMTNRVRNSVLELYSINYDLTSNVLPMTNSNQDFLFINHRGKNVGLPIRQRS 326

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                 ++ +   LP     H  RH+ A  L   G  L  I+ +LGH  + TT+IY +V+
Sbjct: 327 VDTAWHRIIQKANLPK-IRIHDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVS 385

Query: 303 SKNGGDWM--MEIYDQTH 318
            +     +  +E+Y   H
Sbjct: 386 PEVKERAVNKLELYQMQH 403


>gi|89147644|gb|ABD62681.1| integrase [uncultured bacterium]
          Length = 163

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/111 (36%), Positives = 51/111 (45%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           QG G       L      A  E+     F        P    IR   +     QR ++Q 
Sbjct: 52  QGYGAVYLPGALERKYPNAAREWGWQYVFPSAKLSADPRSGEIRRHHVQDQAVQRAVKQA 111

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            R   L    T HT RHSFATHLL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 112 ARDADLNKPATPHTFRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYTHV 162


>gi|322831910|ref|YP_004211937.1| integrase family protein [Rahnella sp. Y9602]
 gi|321167111|gb|ADW72810.1| integrase family protein [Rahnella sp. Y9602]
          Length = 328

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 94/255 (36%), Gaps = 32/255 (12%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILN 115
           ++ +    QL++  I  +        +   S+ R  + +   F K +   +         
Sbjct: 95  EMGVTRADQLTHKAIIDYRIMMLDLGLKPASVNRHQAILSGMFTKLISAGEYHNAHPFRE 154

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           ++ L++  +    L   +   L+             ++  N  +  L    G R  E  +
Sbjct: 155 VKKLREGTTEMAYLTTDEIKALLQT-----------LEGDNLKVAQLCLATGGRWGEVSN 203

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           L  ++I+ +  T  ++ K  K R VP+   + +AI                  LF     
Sbjct: 204 LKGEHIIKNVITF-MKTKNGKRRSVPVSDELVRAI-----------KTKASGRLFVSNYN 251

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                 +  R ++       LP    AH LRH+FATH + NGG++ ++Q +LGH  +  T
Sbjct: 252 ---TVRMTLRKVKP-----DLPKGQAAHVLRHTFATHFMMNGGNIITLQRVLGHATIQQT 303

Query: 296 QIYTNVNSKNGGDWM 310
             Y +       D +
Sbjct: 304 MTYAHFAPGYLQDAI 318


>gi|315029961|gb|EFT41893.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4000]
          Length = 408

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/318 (16%), Positives = 103/318 (32%), Gaps = 46/318 (14%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR--------RTQKIGDRSLKR 90
           Y    R ++          I    + +    + + FI+              +   ++K 
Sbjct: 94  YRDAIRMYIDPY-------IGNYQLNKYKPADHQKFINSLFTNKELGKNKNGLSYNTVKI 146

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
             + + +  K  +K      +    +              +K     ++   L       
Sbjct: 147 VNAALSNAFKKAQKLGYVKSNPTYLVEFPLDKVKEKTNKEKKLEFYTLEQENLFLDTARN 206

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-----RIQGKGDK--------- 196
           + D        +++  GLR  E ++L   N     + L     R+  K            
Sbjct: 207 FDDFMWYVFFLIIFDLGLRKGEVMALRWFNFDFRDNILTFDKQRLYRKEQPGQVILDDVK 266

Query: 197 ----IRIVPLLPSVRKAILEYYDLCP------FDLNLNIQLPLFRGIRGK----PLNPGV 242
                R + +   VR ++LE Y +          +  + Q  LF   RGK    P+    
Sbjct: 267 TDAGKRSLKMTNRVRNSVLELYSINYDLTSNVLPMTNSNQDFLFINHRGKNVGLPIRQRS 326

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                 ++ +   LP     H  RH+ A  L   G  L  I+ +LGH  + TT+IY +V+
Sbjct: 327 VDTAWHRIIQKANLPK-IRIHDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVS 385

Query: 303 SKNGGDWM--MEIYDQTH 318
            +     +  +E+Y   H
Sbjct: 386 PEVKERAVNKLELYQMQH 403


>gi|313889180|ref|ZP_07822834.1| site-specific recombinase, phage integrase family [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312844734|gb|EFR32141.1| site-specific recombinase, phage integrase family [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 299

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/301 (17%), Positives = 118/301 (39%), Gaps = 25/301 (8%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+  EIE  +S  +++ Y      F   +      ++      +LS   +  F   ++ 
Sbjct: 17  FLKVKEIE-QISPDSIKGYVS----FFSTVENKIGGRLNYDDENELSLQVLDYF---QKI 68

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-RNLKKSNSLPRALNEKQALTLVD 139
               + S   +    +++  YL K      + ++ M    +K    PR  + +    L+D
Sbjct: 69  SYFKNSSYNTAYKRARAYFNYLVKIDKLENNPLILMGIKERKEEFNPRPCDTEDLKKLLD 128

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
            +         +   R+   + L+   G+R +EA  L   +++ +++ + I+ +  K   
Sbjct: 129 VI-----DTDTYAGLRDYTAILLIVDTGIRPAEAFRLIDTDVIFEKNIINIRKEVAKTSQ 183

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
             +LP   K ++         L  N    +F  I G   +   F+  +++   Y    + 
Sbjct: 184 ARVLPVSVKVMI----YVRALLKYNKSEYVFATINGDQFSTDRFRTRLKKYCWYA--DVH 237

Query: 260 TTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
            T + LRH F T    +   ++  +Q ILGH +L  T+ Y  + +++    +   +    
Sbjct: 238 ITPYQLRHYFGTEYARSDNCNILYLQKILGHSKLEMTRRYVKIETED----LARNHKLAS 293

Query: 319 P 319
           P
Sbjct: 294 P 294


>gi|291521434|emb|CBK79727.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 422

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/332 (13%), Positives = 118/332 (35%), Gaps = 50/332 (15%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSL 88
           G+   T+  Y               ++    + I  +  ++ + ++   +  +K    S+
Sbjct: 97  GVRPTTVAGYGTVINLL-------KKDPFGKRRIDMVRISDAKCWLIHLQQVEKKSYSSI 149

Query: 89  KRSLSGIKSFLKYLKKRKITTESNIL--NMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
                 ++   +      +  ++      M  +   +    A++  +    +   +    
Sbjct: 150 HSIRGVLRPAFQLAVDDDLIRKNPFQFQLMEVVVNDSVTREAISRAEERKFLR-FVKEDP 208

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---------------- 190
           H  ++ +      +Y+L+  GLRISE   LT  +I   + T+ I                
Sbjct: 209 HFCRYYEG-----IYILFKTGLRISEFCGLTISDIDFKEHTINIDHQLQKKSKIGDYIQE 263

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFD------------LNLNIQLPLFRGIRGKPL 238
                  R +P+   V K   +  +                 L  +    +   +  +  
Sbjct: 264 TKTTSGTRKIPMTADVEKCFRKIIEKRNPPKVEPMVDGKSGFLYFDKNESICYSLHWEHY 323

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-I 297
              + Q+Y    +  + +    T H  RH++ +++  +G + +++Q ++GH  +S T  +
Sbjct: 324 FQHIIQKYNNTYKVQMPV---ITPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNV 380

Query: 298 YTNVNSKNGGDWM--MEIYDQTHPSITQKDKK 327
           YT++   +  + +  ME + +    + QK +K
Sbjct: 381 YTHIGFDDAEEELKRMEEFRKAQAEVEQKKEK 412


>gi|223934444|ref|ZP_03626365.1| integrase family protein [bacterium Ellin514]
 gi|223896907|gb|EEF63347.1| integrase family protein [bacterium Ellin514]
          Length = 341

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/295 (18%), Positives = 101/295 (34%), Gaps = 34/295 (11%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L K  +++ + +E  RG S  T+ +     R ++      T  ++       ++   I  
Sbjct: 71  LQKALEDYQEWMET-RGKSPRTIMNNVHYIRSWI------TAAQVEALPPAAITEKHISD 123

Query: 74  FISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-------NLKKSNSL 125
           +I+ R +Q K   R++   L+ I+SF  ++  +  T       +        +++K  ++
Sbjct: 124 WINNRESQTKANSRTI--MLAAIRSFFFFIAGKGWTPNDPSKLVSVNYKILSHVQKETTV 181

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
            R     +   LV           K  D      +      GLR+ +   L   +     
Sbjct: 182 KRVFTAAEYDGLV-----------KATDGFWRFAIQASRELGLRLGDICQLEW-DCFRQP 229

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             + +       R+   +            +           P  R I   P        
Sbjct: 230 GYITVWTDKRDKRVSLKMSDGLAQAATLQPVAH----ARYVFPEERDIINDPTRRAYLSV 285

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              ++   LGL    + H LRH+FAT   + G  L  I S +GH    TT+ Y +
Sbjct: 286 SFTRICARLGL-KGKSFHCLRHTFATESNAEGRSLTQIASDMGHSSTRTTEGYVH 339


>gi|29375984|ref|NP_815138.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|29343446|gb|AAO81208.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
          Length = 408

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/318 (17%), Positives = 104/318 (32%), Gaps = 46/318 (14%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--------KIGDRSLKR 90
           Y    R ++          I    + +    + + FI+   T          +   ++K 
Sbjct: 94  YRDAIRMYIDPY-------IGNYQLNKYKPADHQKFINSLFTNKELGKSKNGLSYNTVKI 146

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
             + + +  K  +K      +    +              +K     ++   L       
Sbjct: 147 VNAALSNAFKKAQKLGYIKSNPTYFVEFPLDKVKEKTNKEKKLEFYTLEQENLFLDTARN 206

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-----RIQGKGDK--------- 196
           + D        +++  GLR  E ++L   N     + L     R+  K            
Sbjct: 207 FDDFMWYVFFLIIFDLGLRKGEVMALRWFNFDFRDNILTFDKQRLYRKEQPGQVILDDVK 266

Query: 197 ----IRIVPLLPSVRKAILEYYDLCP------FDLNLNIQLPLFRGIRGK----PLNPGV 242
                R + +   VR ++LE Y +          +  + Q  LF   RGK    P+    
Sbjct: 267 TDAGKRSLKMTNRVRNSVLELYSINYDLTSNVLPMTNSNQDFLFINHRGKNVGLPIRQRS 326

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                 ++ +   LP     H  RH+ A  L   G  L  I+ +LGH  + TT+IY +V+
Sbjct: 327 VDTAWHRIIQKANLPK-IRIHDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVS 385

Query: 303 SKNGGDWM--MEIYDQTH 318
            +     +  +E+Y   H
Sbjct: 386 PEVKERAVNKLELYQMQH 403


>gi|153212038|ref|ZP_01947855.1| integrase [Vibrio cholerae 1587]
 gi|124116834|gb|EAY35654.1| integrase [Vibrio cholerae 1587]
          Length = 412

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/330 (15%), Positives = 107/330 (32%), Gaps = 56/330 (16%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           + N   +     + +    WL    IE  ++  T+++Y+   +Q    L     E   + 
Sbjct: 69  KANQYSDKKDITIKELFDRWLDLKVIE--VTPATIKNYQQRVKQVYWHL----PETTLVS 122

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            + Q    E+R    KR T+     +    +  +K    +      +  + +  ++ LK 
Sbjct: 123 EVTQEKLLELR----KRFTETCSPSTANTYMRTLKGIFSFAINSGYSDPALLNGIKELKT 178

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
               P+ L+E++   ++++              +++    +    GLR  E ++L  ++I
Sbjct: 179 QKRKPQPLSEEEFQRVIEHC----------QHEQDANFWTVAVYTGLRHGELMALAWEDI 228

Query: 182 MDDQSTLRIQ------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-- 227
             +  T+ ++                  R V LL     A+            L I +  
Sbjct: 229 DLENGTITVRRNLTLEGRFKLPKTISGERTVNLLNPALAALKAQMKWTFMLPELEIDVLQ 288

Query: 228 ------------PLFRGIRGKPL-------NPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
                       P+F               +          L +   L      +  RH+
Sbjct: 289 REYGKLQRQFIRPVFSPSVTARYEVDNRYYHHVSIWEKWNMLCKRAKLTYR-KPYQTRHT 347

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +A  +LS G +   I   +GH      ++Y
Sbjct: 348 YACWMLSAGANPTFIAKQMGHSSAK--EVY 375


>gi|73541315|ref|YP_295835.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ralstonia
           eutropha JMP134]
 gi|72118728|gb|AAZ60991.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ralstonia
           eutropha JMP134]
          Length = 411

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 58/368 (15%), Positives = 118/368 (32%), Gaps = 70/368 (19%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           +I + + L     WL         S  T Q+Y  +  + +++           + +  L+
Sbjct: 47  QIAASDDLAAVAAWLARYAN----SPATFQAYRREVERLVLWATLQRG-----KPLSSLT 97

Query: 68  YTEIRAF--------------------ISKRR------TQKIGDRSLKRSLSGIKSFLKY 101
           + ++ A+                    +++           +   S ++++  + +   +
Sbjct: 98  HEDLLAYEHFLGDPQPAARWVLGAGKKLARNHPGWRPFAGPLSPASTRQAMVILNACFAW 157

Query: 102 LKKRKITTESNILNMRNLKKSN--SLPRALNE---KQALTLVDNVLLHTSHETKWIDARN 156
           L +    + + +   R  +      + R L+          ++ +   T  E        
Sbjct: 158 LTEAGYLSGNPLSLARRRRGPTQARITRYLSHALWDAVKEAIEAMPTGTERECLHAARC- 216

Query: 157 SAILYLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSVRKA 209
             +  +LY  GLR SE    T             ++  L + GKG K R+VP    +   
Sbjct: 217 RWLCTVLYLAGLRASEVAGTTMGAFFCRRDAQGIERWWLEVVGKGSKPRLVPATDELVAE 276

Query: 210 ILEYYDLCPFDL--NLNIQLPLF-----RGIRGKPLNPGVFQRYIR-------------- 248
           +  Y                PL      R    K ++ G     ++              
Sbjct: 277 LARYRRANGLPPMPQPGEDRPLVLPVIGRANPDKAMSRGALHLVLKEVFSMAAERLRARG 336

Query: 249 -QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            Q      +  S +AH LRH+  +H+     DLR ++   GH  +STT IY +       
Sbjct: 337 PQWAAQADVLASASAHWLRHTAGSHMSDRQVDLRHVRDNFGHASISTTSIYLHTEDDARH 396

Query: 308 DWMMEIYD 315
           +   E + 
Sbjct: 397 EATQERHR 404


>gi|289628243|ref|ZP_06461197.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|330866264|gb|EGH00973.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 404

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 94/275 (34%), Gaps = 36/275 (13%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           + I  Q +  ++  ++    +          +  R +  I          +    S +  
Sbjct: 128 DTIMHQRLDAITGRDLEQLRTGWLNAGNKASTANRKMGSISGVFSRAVDWEYLPSSPLDK 187

Query: 116 MRNLKKS-NSLPRALNEKQALTLVDNVL-------LHTSHETKWIDARNSA--------- 158
           ++ LK       R L++ + L L + +        L      KW   RN A         
Sbjct: 188 IKPLKVDTKGQVRYLSKDETLNLKNALEVREHRACLERDSANKWRAERNKALFPDLTKLA 247

Query: 159 -------ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRK 208
                  ++ +    G+R  E   LT Q I  D+  + + G   K  + R +P+      
Sbjct: 248 FTDHLKPMVLVSLNTGMRRGELFGLTWQAINFDRKVITVGGDTAKTSETRHIPMNTETFD 307

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            +  +             + +F G+ G  +     +    +L +   +      H +RH 
Sbjct: 308 TLKAW------SKQSGASVFVFPGLDGGRMED--VKSVWLKLLQEACIT-GFRWHDMRHD 358

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           FA+ L+  G  L +++ +LGH  +  T  Y ++  
Sbjct: 359 FASRLVMAGVPLNTVRDLLGHTDIKMTLRYAHLAP 393


>gi|251783530|ref|YP_002997835.1| DNA integration/recombination/inversion protein [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242392162|dbj|BAH82621.1| DNA integration/recombination/inversion protein [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 387

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 87/233 (37%), Gaps = 21/233 (9%)

Query: 96  KSFLKYLKKRKITTESNILNMRNLKK---SNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           +  L+Y    ++   +   ++   +K        +  + ++    ++   L     + + 
Sbjct: 148 RRILQYGVTMQVIEHNPARDVIIPRKQNNKEHKVKFFSNQELKQFLNY--LDDLDLSSYE 205

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL--------- 203
           +  +  +   L   G RI E L+L   +I  ++ T+++    ++ +              
Sbjct: 206 NFFDYVLYKTLLATGCRIGEVLALEWSDIDLEKGTIKVSKTLNRYQETNTPKSKAGLRDI 265

Query: 204 --PSVRKAILEYYDLCPFDLNLN---IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
                   +L+ Y      L+ +    +  +F     K     + ++ +++  +  G+P 
Sbjct: 266 EIDRATVLLLKQYKNRQQVLSWDLGRSETIVFTPFTTKYAYACLLRKRLQKHFKAAGVP- 324

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
             + H  RH+ AT +L  G + + +Q  LGH  +S T   Y +   +     +
Sbjct: 325 DISFHGFRHTHATIMLYAGIEAKDLQYRLGHSNISMTLNTYVHATKEGAKKAV 377


>gi|25010311|ref|NP_734706.1| hypothetical protein gbs0237 [Streptococcus agalactiae NEM316]
 gi|23094663|emb|CAD45882.1| unknown [Streptococcus agalactiae NEM316]
          Length = 377

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 116/318 (36%), Gaps = 37/318 (11%)

Query: 12  FELLKERQNWLQNLEIERGLSK-LTLQS-YECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           +ELLKE  N + +    R +S   T ++ Y    + +   + +    K+T + I Q    
Sbjct: 67  YELLKEEDN-INH----RKVSYINTQENNYNKHIKDYFSKVDYVG--KLTYEDIYQF-RE 118

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +R  +++     +   ++ + +  +K       ++   + + +  ++ L    +  +  
Sbjct: 119 HLRKKVAQNSDNLLSSNTINKIMILLKKIFDIGLRKGYYSTNPVKLLKKLPIEKTKMQFW 178

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
             K+    +           +  +     +  +L+  GLR+ EAL+LT Q+I    +T+ 
Sbjct: 179 TVKEFQQFLTLF--------EPEEYNIKLLFTVLFFTGLRLGEALALTWQDIDFSSNTIH 230

Query: 190 IQG---------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           I                      R + L   + + + ++       L       L   + 
Sbjct: 231 ITKSVYVNKGISHINTTKTKAGTRRIVLNKKLSQELQDWQQQQKHLLEQFTSDNLTLQVF 290

Query: 235 G---KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
                 +     ++  +++            H  RHS A+ L++ G D   ++  LGH  
Sbjct: 291 QSSPITITKNAIEKQYKKILERDNTLKIIRIHDFRHSHASLLINQGEDYLVVKERLGHAS 350

Query: 292 LSTT-QIYTNVNSKNGGD 308
           ++TT   Y+++      D
Sbjct: 351 ITTTIDTYSHLYPSKQKD 368


>gi|197301291|ref|ZP_03166376.1| hypothetical protein RUMLAC_00022 [Ruminococcus lactaris ATCC
           29176]
 gi|197299609|gb|EDY34124.1| hypothetical protein RUMLAC_00022 [Ruminococcus lactaris ATCC
           29176]
          Length = 411

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/331 (16%), Positives = 116/331 (35%), Gaps = 51/331 (15%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-R 79
           + + + ++  L   T  +Y       L     +  +    + I ++ Y+++  F +    
Sbjct: 77  FDRYMSLKNNLKPTTKSNY-------LYMYDRFIRDTFGKRNIAEIKYSDVVQFYNHLIE 129

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q++   +L+   + +    +   +  I  ++    +   +   +L      + ALT+  
Sbjct: 130 KQELKINTLETIHTLLHPTFQLAVRDDIIRKNPTDGVMA-ELKKNLGMKTGVRHALTIPQ 188

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG------- 192
                    T  I      I  +  G G RI E L L  ++I  ++  + I         
Sbjct: 189 QRAFMEYIATHPIYFHWWPIFTIFLGTGCRIGEVLGLRWEDINYEKRIISINHNLTYYPV 248

Query: 193 --------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGI 233
                             +R +P+L +V+ A    ++    +   + ++      +F   
Sbjct: 249 GEDRASENHISTPKTEAGMRTIPMLDTVKDAFEMIWEEQKENGWTDAEIDGMTGFVFCNR 308

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLST---------------TAHTLRHSFATHLLSNGG 278
            G  +N     R I+++                         +AH+LRH+F T L     
Sbjct: 309 YGNIMNAQSVNRAIKRISSAYNATEEVEAKKEHREPVLLPDFSAHSLRHTFCTRLCERET 368

Query: 279 DLRSIQSILGHFRLSTTQ-IYTNVNSKNGGD 308
           +L+ IQSI+GH  + TT  IY     +   +
Sbjct: 369 NLKIIQSIMGHKDIQTTMDIYAEATEEKKQE 399


>gi|329849596|ref|ZP_08264442.1| phage integrase family protein [Asticcacaulis biprosthecum C19]
 gi|328841507|gb|EGF91077.1| phage integrase family protein [Asticcacaulis biprosthecum C19]
          Length = 430

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 60/343 (17%), Positives = 112/343 (32%), Gaps = 59/343 (17%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQS--YECDTRQFLIFLAFYTEEKIT 59
           +     E+   EL      +L+     +  S  TL+S  Y          +  + +  + 
Sbjct: 96  KAQKRKEMTVAELCD---FYLEEGTTTKKAS--TLKSDGYR---------INRHIKPLLG 141

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDR-----------------------------SLKR 90
              I +++ + I  F+      K G R                             +  R
Sbjct: 142 KLKISEVNSSHIERFLRDVAAGKHGGRKPSKVEAKRTGLTAETRGRTDSNVRGGKGTATR 201

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           ++  +     +  KRK+ ++     +   K   S  R L+ ++   L   + L       
Sbjct: 202 TVITLSGIFTFAVKRKLRSDHPCRGVETYKAGKSE-RHLSLEELKRLGQVMDLS------ 254

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
             +A   AI+  L   G R  E   L    +      L++       ++VP+     + +
Sbjct: 255 HWNATAVAIIRCLILTGCRKGEIEHLRRDAVDFSNHFLKLSDSKTGPKVVPVGLPALELL 314

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
             Y +     +      P         +        I+       LP  TT H LRH+FA
Sbjct: 315 RPYVNAS---VKSEFVFPSAVDANKPFIGTPKIWTQIKLA---ADLPK-TTLHDLRHTFA 367

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +  + +G  L  I  ILGH  + TT+ Y ++   +      +I
Sbjct: 368 SLAIEDGKTLPIIGKILGHSDIKTTERYAHLTDTSARRAANDI 410


>gi|282859589|ref|ZP_06268693.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282587640|gb|EFB92841.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 407

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/289 (16%), Positives = 96/289 (33%), Gaps = 25/289 (8%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIG 84
            + +  +  T + Y    +    F+ F    K +  ++ +L+   IR F    +    + 
Sbjct: 122 RVGKDRAVRTYRKYLTVRKYVAEFIKFQY--KRSDMSMNELTEEFIRDFCLYLKNVIGLT 179

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             ++      +K  +           +                   E++ LT  +  +  
Sbjct: 180 QSTIWIYSIPLKHIVTAAHYNGKIQRNPFAMYHVAPDHK-------EREFLTEEELDIFA 232

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVP 201
                    A    +       G+   +  +LT  N+     +  I   + K      + 
Sbjct: 233 GIELENPNFAFARDLFMFGCWTGISFVDIKNLTEDNVAIISGSPWIVSQRQKTGVPFKIK 292

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           L+ +  + I  Y  L       NI             +  +  + I+++ +  G+    +
Sbjct: 293 LIDAAIQIIERYKPLRKDMHLFNIG------------SLDMVNKRIKKVAKMCGIKKRIS 340

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            H  RHSFA   L+ G  + S+  ILGH  ++TTQIY  V S      +
Sbjct: 341 FHVSRHSFAVLALNYGMPIESVSKILGHTDIATTQIYAKVTSTKLEHDI 389


>gi|254883641|ref|ZP_05256351.1| transposase [Bacteroides sp. 4_3_47FAA]
 gi|319642287|ref|ZP_07996946.1| transposase [Bacteroides sp. 3_1_40A]
 gi|254836434|gb|EET16743.1| transposase [Bacteroides sp. 4_3_47FAA]
 gi|317386143|gb|EFV67063.1| transposase [Bacteroides sp. 3_1_40A]
          Length = 410

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 59/315 (18%), Positives = 113/315 (35%), Gaps = 37/315 (11%)

Query: 14  LLKERQNWLQNLEIER----GLSKLTLQSYE---CDTRQFLIFLAFYTEEKITIQTIRQL 66
           LLK  +    N E E+      ++ T   Y       R+FL     Y  E I ++ +   
Sbjct: 109 LLKLFEQ--HNAEFEKKVGHSRAQGTFTRYRTVCNHIREFLPH--TYKREDIPLKELNLT 164

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSL 125
              +   F+     +K    ++   +  +K  +   +       +     + + +  +  
Sbjct: 165 FTNDFEYFL--CTEKKCRTNTVWGYMIVLKHIVSIARNDGHLPFNPFAGYINSPESVDR- 221

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT---PQNIM 182
              L + +  TL+D  + + +HE          +       GL  S+  +LT    Q   
Sbjct: 222 -GYLTQTEIQTLMDASMKNATHELV------RDLFVFSVFTGLAYSDVKNLTADLLQTFF 274

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           D    +  + K         L  V K I+E Y     D ++               + G 
Sbjct: 275 DGNLWIITRRKKTNTESNIRLLDVPKCIIEKYKGLARDGHVFPVP-----------SNGS 323

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHS-FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             + ++ + R  G  +  T H  RH+   T LLS+G  + ++  +LGH  + TTQIY  +
Sbjct: 324 CNKILKDIGRQCGFKVRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKI 383

Query: 302 NSKNGGDWMMEIYDQ 316
            ++     M  +  +
Sbjct: 384 TAQKISQDMETLSHK 398


>gi|212691117|ref|ZP_03299245.1| hypothetical protein BACDOR_00607 [Bacteroides dorei DSM 17855]
 gi|212666349|gb|EEB26921.1| hypothetical protein BACDOR_00607 [Bacteroides dorei DSM 17855]
          Length = 415

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/289 (18%), Positives = 108/289 (37%), Gaps = 25/289 (8%)

Query: 34  LTLQSYECDT---RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
            ++ +Y       +    +L     ++I  + I +      +AF+   R +        R
Sbjct: 133 NSISTYRNSQYFQKYLTDYLTSLGRKEIAFEEITEDFGKGYKAFLV--RNKNFSSTQTNR 190

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L  +   L      +I   + + ++   KK     + +  ++   ++   L    ++ +
Sbjct: 191 CLCWLNRLLYLAVDNEILRTNPVEDVEYEKKPAPKHKYVTREEMKRIMAMPL----NDGR 246

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVR 207
               R + I   L   GL  ++   L P++I    D +  +RI  K  ++  V  L  + 
Sbjct: 247 AELGRRAFIFSCL--TGLAYADIKQLHPRHIETTADGRRFIRICRKKTEVEAVIPLHPIA 304

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + IL  Y+        N+  PL         +       IR++   LG     + H  RH
Sbjct: 305 EQILALYNTTDMH---NLVFPLP--------SRDSIWHEIREIGVILGRNDDLSYHQARH 353

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            F   L+S    + SI  ++GH  ++TTQ Y  +        M ++ ++
Sbjct: 354 GFGVLLISESVSIESIAKMMGHSNITTTQGYARITEDKISKEMDKLMEK 402


>gi|270308830|ref|YP_003330888.1| site-specific recombinase, phage integrase family [Dehalococcoides
           sp. VS]
 gi|270154722|gb|ACZ62560.1| site-specific recombinase, phage integrase family [Dehalococcoides
           sp. VS]
          Length = 385

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 51/309 (16%), Positives = 109/309 (35%), Gaps = 38/309 (12%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L++  +E   S  T         ++   +  +    +    + QL    I+A+ SK  +
Sbjct: 69  FLES-WLETYASCNTA---PRTFERYSQIVRLHLTPNLGRIELTQLRPEHIQAYYSKALS 124

Query: 81  QK------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
                   +  +++K     +   L +  K  +   +  + +   +        +  +  
Sbjct: 125 GGRVSGGGLSAQTVKHHHRVLSEALNHAVKWGLLARNVAMAVDPPRPEKREMHTIAPEDM 184

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--- 191
             L +      +   K        I       G+R  E L+L   +I   +S + ++   
Sbjct: 185 SVLFE----EAAKMEKNSGLPYELIFMTALHTGMRRGEILALRWSDIDLAKSKIYVRCSL 240

Query: 192 -------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDL-----NLNIQLPLFRGI 233
                              R+V + PS+ + ++ + +    ++      L     +F   
Sbjct: 241 QCLKNGEIIIREPKTPGSRRLVSMTPSLLEKLIIHKESSSANMILQGKTLQGDSLVFAHF 300

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            G P+NP        ++ +  GL L    H LRHS AT +L+ G   + +   LGH  ++
Sbjct: 301 DGTPINPNTVSPAFAKIAKRAGLNLRL--HDLRHSHATLMLTAGVHPKIVSERLGHSTVA 358

Query: 294 -TTQIYTNV 301
            T   Y++V
Sbjct: 359 FTLDTYSHV 367


>gi|66395462|ref|YP_239821.1| ORF012 [Staphylococcus phage 2638A]
 gi|62635889|gb|AAX91000.1| ORF012 [Staphylococcus phage 2638A]
          Length = 345

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/293 (17%), Positives = 116/293 (39%), Gaps = 19/293 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +NW++  + E  +S+ T + Y    +            KI    I +++    + FI+ 
Sbjct: 60  FKNWIETYK-ENIVSENTFRHYRFTLKH-------IQRHKIGKVEISKINKQMYQKFIND 111

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
               +  + +++++   IKS L+      +  ++    +   K   +     +E++    
Sbjct: 112 FSENRAKE-TIRKTNGAIKSALEDAVYDGLIAKNPTYKI-TFKAGKT---TKSEEEKYIS 166

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           ++       +          A LY++   G R+S   S+  + I + +S L I       
Sbjct: 167 LEEYKALKEYLKDKSSKSALA-LYIMICTGCRVSGVRSMKLEYINEFRSELYIDEHKTDS 225

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
               +  +V K  L +      +  ++    +F+      ++     + +++    LG+ 
Sbjct: 226 SPRYV--AVGKNDLRHIINVIKNSTISYDGYIFKDSGKL-ISINAINKTLKKACESLGIN 282

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDW 309
              T+H LRH+  ++LL+    +  I   LGH  +S TT IY+++  +   + 
Sbjct: 283 Y-ITSHALRHTHCSYLLAKDISIYYISKRLGHKNISITTSIYSHLLEEKFSEE 334


>gi|124387997|gb|ABN10350.1| unknown orf/DNA integrase fusion protein [Pseudomonas aeruginosa]
          Length = 281

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 50/98 (51%)

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
             V++ +           + +   P    +R   +    FQR  ++     G+    T H
Sbjct: 162 DDVKRYLTWLAVERDVAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPH 221

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           TLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 222 TLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 259


>gi|89147426|gb|ABD62573.1| integrase [uncultured bacterium]
          Length = 163

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 48/89 (53%)

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +     F  +     P     R   ++P   QR +R   R  G+    T HTLRHSFATH
Sbjct: 74  WIWQYVFPSDRLSVDPRTGITRRHHVDPRAVQRALRDALRCAGIAKHATPHTLRHSFATH 133

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 134 LLDAGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|89147414|gb|ABD62567.1| integrase [uncultured bacterium]
          Length = 163

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/111 (37%), Positives = 55/111 (49%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +G G       L      A  E+     +        P     +   LN    QR +++ 
Sbjct: 52  KGWGSVALPGALSRKYPNAEREWAWQWVWPSTHIGIDPADGRRKRHHLNETTMQRVMKEA 111

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            R  GL    T HTLRHSFATHLL NG D+R++Q +LGH  +STTQIYT+V
Sbjct: 112 VRTAGLTKPATCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTQIYTHV 162


>gi|331087956|ref|ZP_08336879.1| transposase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330409267|gb|EGG88716.1| transposase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 396

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 106/298 (35%), Gaps = 38/298 (12%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           RQ+L  +     + + ++ I  +  ++ + +  +   +    +++      +K+      
Sbjct: 107 RQYL--MNALKNDPLGMRAIDTVKQSDAKEWAIRMSEKGYAYKTIDNYKRSLKASFYMAI 164

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           +     ++        K S+ L     +K  LT      L    ET  I ++    + LL
Sbjct: 165 QDDCIRKNPFE----FKLSDVLEDDTEQKVILTPEQEERLLAFMETDKIYSKYYDEIVLL 220

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVR 207
              GLRISE   LT  +I      L I                    +  R +PL     
Sbjct: 221 LETGLRISEFCGLTT-HIDMQNRILNIDHQLLKDSEIGYYIETPKTKNGKRELPLTERAY 279

Query: 208 KAILEYYDLC---PFDLNLNIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGL 256
           +AI             +       LF    G P        +  G+ ++Y +     L  
Sbjct: 280 QAIQRILKNRGKAQPLIVGGYSNFLFLNREGLPKVAGNYEGMVRGLIKKYNKYHTDKL-- 337

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
             + T H+ RH++ T++ + G +  ++Q ++GH  ++ T   Y +   ++    +  +
Sbjct: 338 -PNITPHSFRHTYCTNMANKGMNPNTLQYLMGHANITMTLGYYAHGTFQSAKAELERL 394


>gi|320084984|emb|CBY94773.1| Tyrosine recombinase xerD [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 168

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/145 (27%), Positives = 57/145 (39%), Gaps = 1/145 (0%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYY 214
           N  ++ + +  G R SE L L   +I      L I+  K       PLLP     +  + 
Sbjct: 7   NRCLILMAFIHGFRASELLGLRLSDIDLAGRQLYIRRLKNGFSTCHPLLPDEYNVLKSWL 66

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
               +         LF  +R  PL+   F   +R+  R   L ++   H LRH+    L 
Sbjct: 67  RARKYLEKGADGDWLFLSLRRHPLSRQQFFYILREAGRLAELTIAPHPHMLRHACGYALA 126

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYT 299
             G D R IQ  LGH  +  T  YT
Sbjct: 127 DKGIDTRLIQDYLGHRNIQHTVRYT 151


>gi|228994460|ref|ZP_04154321.1| DNA integration/recombination/inversion protein [Bacillus
           pseudomycoides DSM 12442]
 gi|228765285|gb|EEM13978.1| DNA integration/recombination/inversion protein [Bacillus
           pseudomycoides DSM 12442]
          Length = 387

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 58/301 (19%), Positives = 114/301 (37%), Gaps = 37/301 (12%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-------EKITIQTIRQLSYTEIRAF-- 74
           + + E+ +   +   Y  D  QF  F+   TE       +    +  R L    IR +  
Sbjct: 73  HFDKEKRIKDNSRVLYARDLSQFYFFIKQSTEYLQQDVKDYEDGRVWRNLRKRHIRNYQR 132

Query: 75  ------ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN--LKKSNSLP 126
                 +S +  +K    ++ R L  I+S+LK+L +     E   + + +  + K +   
Sbjct: 133 WLSEEAVSYQSREKYKPSTISRKLGVIRSYLKWLYEIGYIQEPLHVEVLSTTVGKHHKPK 192

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ----NIM 182
           R L+ ++   L+              +  N A+L +L   GLR++E      +    + +
Sbjct: 193 RDLSYEEVKQLLRYY---------QDNEINYALLSILATTGLRVAEVAHAKWENLEFDSI 243

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNP 240
            D+  L +  KG+  RIV +   +   I+ +       +N+  +    +F+         
Sbjct: 244 RDRYYLTVDTKGNGERIVSINKEIFHRIVAFRIRRRLPINIGNKNGGTIFQTKNHTAYRE 303

Query: 241 GVFQRYIRQLRRYLGLPL----STTAHTLRHSFATHLLS-NGGDLRSIQSILGHFRLSTT 295
               +YI ++ +   LP       T H  RH +  +L          I + +GH    TT
Sbjct: 304 NYLSQYITKIIKDTELPFTKDIRITPHFFRHFYVQYLYDYKELPPHLIAAAVGHKDDRTT 363

Query: 296 Q 296
           +
Sbjct: 364 K 364


>gi|218782611|ref|YP_002433929.1| integrase family protein [Desulfatibacillum alkenivorans AK-01]
 gi|218763995|gb|ACL06461.1| integrase family protein [Desulfatibacillum alkenivorans AK-01]
          Length = 409

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 94/237 (39%), Gaps = 23/237 (9%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +  +++K +L  ++  + + +++ +        +   K  N+    L   Q   L+  + 
Sbjct: 173 LTPQTVKNTLEILRRIINFGERKGLCEGLGF-KITFPKVDNTKTEDLTPDQLRDLLKAID 231

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
             T+ E        +AI+ +    G+R  E L L   ++  ++  + I            
Sbjct: 232 EATNTEV-------AAIMKMALYSGMRRGELLKLQWDHVDFERGFIHIVDPKGGASQKVP 284

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           L    +A+LE       + +      +F G  GK       +    +++   GLP    A
Sbjct: 285 LNDASRALLE-------NRSRTDSPYVFPGKGGKQ--RVCIRHEANKIKEKAGLPKDFRA 335

Query: 263 -HTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            H LRH++A+ L S+G  D+ ++Q +L H     TQ Y ++      D + +  +  
Sbjct: 336 MHGLRHTYASMLASSGKVDMYTLQKLLTHKSPQMTQRYAHL----RDDALKQASNLA 388


>gi|254167363|ref|ZP_04874215.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|197623626|gb|EDY36189.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
          Length = 310

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 67/304 (22%), Positives = 124/304 (40%), Gaps = 35/304 (11%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +E + W++        S  T+      T +++ F+    E       + + S  EI   I
Sbjct: 12  REFKVWMR--RNSNRFSMNTI----THTLRYVKFIETQLE-----LNLDEASVDEITDRI 60

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNEKQ 133
            + R       +L   +  +  +L++            + ++  + + +  L   +   +
Sbjct: 61  YELRESGKTVTTLNSWVKYLNRYLEFRGDE--------IKLKYFRHTQNDDLYFFVPTDE 112

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--- 190
               +    L  +     ++ARN A+L LL+  G+RI EA++L   +I     +L I   
Sbjct: 113 EKDSI----LAVTWVRLDVNARNRALLNLLFATGIRIGEAIALNWNDIDLTNPSLPILHI 168

Query: 191 -QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
             GKG+K RIVPL P V K +++Y +    + + N             +     ++  ++
Sbjct: 169 RHGKGEKKRIVPLPPKVLKMLIDYKEKYRINSDPNAIF----TTPHGRITHPFARKICKE 224

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT-NVNSKNGGD 308
                G+P    AH  RH  A   L +G +L +I+  LGH  L TTQ Y   +  +   D
Sbjct: 225 AGELAGVPQ-FHAHAARHWRAIAWLKDGVNLETIRRFLGHSSLKTTQRYIRRLQMEWSFD 283

Query: 309 WMME 312
            + E
Sbjct: 284 EIRE 287


>gi|303236762|ref|ZP_07323341.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302482930|gb|EFL45946.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 404

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 54/286 (18%), Positives = 106/286 (37%), Gaps = 23/286 (8%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSLKRSLS 93
           ++ SY         F+      K++     QL+   I  F           + S     +
Sbjct: 128 SMASYHSTRIHLQEFIQKKY--KVSDLAFSQLTENFIHEFQQYFLGECGFQESSFYNVAT 185

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            +K+  +   +  +         +  K +  LP+AL+++    L    L     E +   
Sbjct: 186 HLKTVCRLAYREGLADVLLFDKAKISKGNKKLPKALDKEALEKL--KALHFEELEGEMET 243

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           AR++ +       G    + + L   + + DD+ +L ++    K  +   +  + +AI  
Sbjct: 244 ARDNFLFAC--YTGAAYCDLMELNKSHLVRDDKGSLWLKFNRHKTGVPCRVKLLPEAIR- 300

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                         LP         +    +Q Y++ LR   G+    T HT RH+FAT 
Sbjct: 301 -LMEKLHSDERETLLPF--------MGYATYQSYLKALRLRAGISFPFTTHTARHTFATL 351

Query: 273 L-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           + L  G  + ++  +LGH  +S T+ Y  V  +     + E +D+ 
Sbjct: 352 ITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQ----KLFEEFDRF 393


>gi|188526753|gb|ACD62258.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 50/94 (53%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 65  RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRTVEQAGITKPATPHTLRH 124

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 125 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|119715959|ref|YP_922924.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119536620|gb|ABL81237.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 378

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 51/293 (17%), Positives = 117/293 (39%), Gaps = 44/293 (15%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL---KRSLSG--IKSFLKY--- 101
           L  +   ++  + +  +  ++++AF+    ++++   +     R+LS   +++  +    
Sbjct: 86  LRLHILPRLGSERVANIRRSDVQAFVKWLESRELRPATESQPARTLSAGSVRNIYEVLAR 145

Query: 102 ----LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
                 + ++   S    +   K  +      +E +  TL +   +  +   +W      
Sbjct: 146 VMDAAVEDRVIAVSPCRRIALPKGHD------DEVEVPTLDEIDRVRDALAERW-----Q 194

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK------------GDKIRIVPLLPS 205
            +  +L G GLR+ E L L   ++   + ++R++ +                R VP+   
Sbjct: 195 VLPVVLAGSGLRVGELLGLRLSDVDFLRRSIRVERQRLQTNQIAPLKSKASRRRVPVGQV 254

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           V  A+  +    P       +  LF    GKPL    ++R +    +  G     T+H+ 
Sbjct: 255 VIDALAAHLASYPP-----TEEALFTDEFGKPLTYRRWKRLVSDAAKVAG--AEITSHSF 307

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFR-LSTTQIYTNVNSKNGGDWMMEIYDQT 317
           RH  A+ L+S G  ++ +Q+ LGH   + T + Y ++   +  D   ++ D  
Sbjct: 308 RHFAASALISGGASVKQVQAFLGHASAVVTLRTYAHLWPGD-EDRTRKVLDAA 359


>gi|302875302|ref|YP_003843935.1| integrase family protein [Clostridium cellulovorans 743B]
 gi|307688153|ref|ZP_07630599.1| integrase family protein [Clostridium cellulovorans 743B]
 gi|302578159|gb|ADL52171.1| integrase family protein [Clostridium cellulovorans 743B]
          Length = 391

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 54/311 (17%), Positives = 98/311 (31%), Gaps = 43/311 (13%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T   YE   R ++     Y+    TI++I+      I+ + +          S+K   
Sbjct: 86  PTTFSRYEGVFRNYIETSELYSLRLGTIKSIQ------IQRYYNNLYDSGKTTSSIKYLN 139

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +K F  Y        ++     + +          +E +  +  +   L  +     +
Sbjct: 140 KLMKQFFNYAVDGGYMLKNPCDGKKIVIPGEVKSETEDELEYFSGEEIEKLKLAANDHSL 199

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------GDKIRIVP- 201
                 ++ +  G GLR  E L +   +I  +  T+ I+            G ++R    
Sbjct: 200 KG----LILVALGTGLRRGELLGMDWSDIDKENLTISIERTVIKTYIIDSDGSRVRKNIV 255

Query: 202 --------------------LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
                               +   V+    EY    P     N    +F    G  L+  
Sbjct: 256 QIPKTKTSIRTVSFPEKLLSIFEEVKAKQDEYKARFPESFAENEFDFVFTSSTGNLLDST 315

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTN 300
                   L     +P     H LRH+FAT L S G     +  +LGH   + T+ IY +
Sbjct: 316 NISHSWDNLLEKNNIP-HKKFHALRHTFATQLFSKGIPTEVVSKLLGHSDPALTRKIYIH 374

Query: 301 VNSKNGGDWMM 311
           V  +     + 
Sbjct: 375 VIPEQRVSSIA 385


>gi|154000910|gb|ABS57023.1| integrase [uncultured bacterium]
          Length = 158

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 50/94 (53%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +     F  + +   P    +R   +    F+R  ++     G+    T HTLRH
Sbjct: 65  RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFRRAFKRAVEQAGIAKPATPHTLRH 124

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 125 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|293568753|ref|ZP_06680067.1| phage integrase family protein [Enterococcus faecium E1071]
 gi|291588470|gb|EFF20304.1| phage integrase family protein [Enterococcus faecium E1071]
          Length = 400

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/305 (18%), Positives = 107/305 (35%), Gaps = 23/305 (7%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ----LSYTEIRAFISKRRTQ 81
             ER +   T ++ +    + + F   +    IT   I      LS TE R    K   +
Sbjct: 84  WYERQVKSQTYENAQFIFEKRMQFFYHFRVRDITSHDIEDWLFELSQTESRNSRKKVNGE 143

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +    + R    +K  L    K  +  ++ + ++ +L   N         + L +++ +
Sbjct: 144 TLSKSYINRIRGHLKIVLDRAVKEGVIAKNPVDDVSSLPSDNKKVEFWEHSEFLKVMNEL 203

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
                 + K        +  +L+  G+RI E  +L+  N+  +++T+ I+          
Sbjct: 204 -----KDDKIQTHHRKIVYEMLFYTGIRIGELEALSWSNVDFEKNTITIEKTLIYNTKDD 258

Query: 202 LLPSVRKAILEYYDLC-----------PFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQ 249
              S  K    Y  +             +DL   I    +         P   F  ++++
Sbjct: 259 WYFSTPKTKCAYRTIGMGKKLSLKLRQWYDLQKRIGNFEYVAQLDGTFTPPYSFANWLKE 318

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGD 308
             +  G+      H LRHS    L+       SIQ  LGH  +  T   Y ++ +K+   
Sbjct: 319 AAKKAGV-KPIKLHALRHSHVAFLIEQNIQPLSIQERLGHANIQITLGTYGHLYAKSDQQ 377

Query: 309 WMMEI 313
            +  I
Sbjct: 378 VVNAI 382


>gi|282922343|ref|ZP_06330034.1| integrase [Staphylococcus aureus A9765]
 gi|282593469|gb|EFB98464.1| integrase [Staphylococcus aureus A9765]
          Length = 404

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 62/351 (17%), Positives = 130/351 (37%), Gaps = 47/351 (13%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ++ N+  ++ +         WL++ +   G    T++  +          A   +  I  
Sbjct: 58  LKHNSTKQLENLTFHDACNEWLEHYKTHSGSKPTTIKEKKS--------NANTVKNAIDS 109

Query: 61  QT-IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRN 118
           +  I ++++T ++  I     +      ++  +  I+S  KY  K   +   S +  +  
Sbjct: 110 KVLISKITHTYLQN-IINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDI 168

Query: 119 LKKSNSLPR-------ALNEKQALTLVDNVLLHTSHETKWIDARNS----AILYLLYGCG 167
            KK+ +           L + +   L++       H+      RN     A++      G
Sbjct: 169 PKKAQTRNELQAKRNNYLEDSEVKELLECFDYLIKHKRHATRKRNYEMVKALVEFQINNG 228

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRI------------------------VPLL 203
           +RI E L++   N+  +  TL I G  + +                             +
Sbjct: 229 MRIGELLAIKTDNVDVENKTLEIDGTINWVTDVETGAFGVKETTKTSKSYRTIGLTTQSI 288

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
             ++K +LE      ++     +  +F    G P++       I++      +    T H
Sbjct: 289 NLLKKLMLENKKENQWNDKFTDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTH 348

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           TLRH+  + L   G +L++IQ  +GH    TT +IYT+V  +   D M ++
Sbjct: 349 TLRHTHISTLAQLGINLKAIQDRVGHSDYKTTLEIYTHVTDQMAKDMMNKL 399


>gi|229545565|ref|ZP_04434290.1| bacteriophage integrase [Enterococcus faecalis TX1322]
 gi|256853373|ref|ZP_05558743.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|307291735|ref|ZP_07571607.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|229309305|gb|EEN75292.1| bacteriophage integrase [Enterococcus faecalis TX1322]
 gi|256711832|gb|EEU26870.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|306497187|gb|EFM66732.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
          Length = 392

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 61/335 (18%), Positives = 127/335 (37%), Gaps = 59/335 (17%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q W +     R L++  + +Y+    Q  I   +   +K     +  LS  E++ F+   
Sbjct: 66  QKWFEYY---RSLNEQKVATYDKREEQVKILNRWIGGKK-----LSSLSSEELQKFLFIL 117

Query: 79  RTQK-------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP----- 126
           + +            SL+  +  +     Y KK+ +  E+ +  ++  K   SL      
Sbjct: 118 KEKGIDGVNVGYAKNSLQSLVQVLNMVFNYCKKKNLINENPMKFVKMPKYQLSLKDLKES 177

Query: 127 ------RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                 + L   +    ++  ++       + +   S + ++L+  G  +SEAL+L PQ+
Sbjct: 178 VNSLEDKFLTVDELRAFLNYGIV-------YEELPMSVLFHVLFYTGCCVSEALALQPQD 230

Query: 181 IMDDQSTL---------------RIQGKG--DKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
           I  +++ +               RI+        R VP+ P V + + E  D+       
Sbjct: 231 IDFERNEILFYKQTAVKGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRN 290

Query: 224 N----IQLPLF----RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
           +     +  LF     G RG P        ++++     G+      H  RH+ A+ L++
Sbjct: 291 SNFVVDETYLFVYLDPGKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMAS-LVA 349

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                  ++  LGH   +T++IY ++ S      +
Sbjct: 350 EYCSWDVLKDRLGHTDSTTSKIYRHLTSTEKLKPL 384


>gi|29349952|ref|NP_813455.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341863|gb|AAO79649.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 308

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 52/299 (17%), Positives = 109/299 (36%), Gaps = 37/299 (12%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T+ +Y       ++          T      L    ++ ++ ++    +  +S+K  L  
Sbjct: 25  TMAAYVLILENHIL---------PTFGECDSLHEEIVQDYVLRKIESGLSVKSVKDILIV 75

Query: 95  IKSFLKYLKKRKITTESNI-LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
           +K  +K+  K +        +    +  +  L   L+      +++++  H S       
Sbjct: 76  LKMVMKFGVKNEWMDYYEWDIKYPTISTNKEL-EVLSVANHKKVLNHIQNHFSFAGLG-- 132

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
                 +Y+    GLRI E  +L   +I     T+ +    ++I I+       + ++  
Sbjct: 133 ------IYISLCTGLRIGEVCALKWSDINTMDGTITVNRTIERIYIIDGTQKHTELVINT 186

Query: 214 YDLCPFDLNLNIQLPLF----------------RGIRGKPLNPGVFQRYIRQLRRYLGLP 257
                    + +   LF                      P  P  ++ Y  +L   LG+P
Sbjct: 187 PKTQNSCREIPMTKELFAMMKPLKKVVNDDFYILTNAEYPTEPRTYRNYYTKLMEKLGIP 246

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYD 315
                H LRHSFAT  +  G D +++  +LGH  +STT  +Y + N +     + +++ 
Sbjct: 247 K-LKYHGLRHSFATRCIEAGCDYKTVSVLLGHSNISTTLDLYVHPNMEQKKRCIAKVFK 304


>gi|291515473|emb|CBK64683.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 355

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 62/294 (21%), Positives = 112/294 (38%), Gaps = 39/294 (13%)

Query: 36  LQSYECDTRQ--------FLIFLAFYTE----EKITIQTIRQLSYTEIRAFISKRRTQKI 83
           L  Y+   R+        +L F  F       E+I +    +     + A   +R  + I
Sbjct: 79  LAYYKKTLRKHDQKWEFVYLHFCNFVGGKCSFEEIDVDLCNKFREYLLNAKQLRRPERPI 138

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
              S     S  + FLK L + K+   +    +  ++  + +   L+ ++   L +    
Sbjct: 139 SRNSAVGYWSTFRGFLKILYRNKLIHSNVNDFLEKIEPEDVVKDYLSVEELYRLAEM--- 195

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----DQSTLRIQGKGDKIRI 199
                 K    + +++   L    LRIS+ L+L  + I+D     +    +  K     I
Sbjct: 196 ----PCKIPILKTASLFSCL--TSLRISDILTLRWEEIVDFAAGGKCVYTVTQKTKTEDI 249

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +P+     + I                 P   G+  K L     Q  +++  R  G+  +
Sbjct: 250 IPISDEALQLI--------------GYSPEKTGLVFKGLKRCWTQYPMKEWIRTAGITKN 295

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            T H+ R +FAT   + G D+R+IQSI+ H  ++TTQ Y  V   N      +I
Sbjct: 296 ITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYMKVVDSNKRKASNKI 349


>gi|150006166|ref|YP_001300910.1| transposase [Bacteroides vulgatus ATCC 8482]
 gi|149934590|gb|ABR41288.1| transposase [Bacteroides vulgatus ATCC 8482]
          Length = 308

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 103/270 (38%), Gaps = 28/270 (10%)

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLKKS 122
             L    ++ F+ ++    +  +S+K  L  +K  +K+  K +        +   +   +
Sbjct: 45  DTLHEQAVQDFVLRKIENGLSVKSVKDILIVLKMVMKFGVKNEWMDYQEWDIKYPSSSTT 104

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             L   L+      +++++  H S             +Y+    GLRI E  +L   +I 
Sbjct: 105 KEL-EVLSVANHKKILNHIQNHFSFTGLG--------IYISLCTGLRIGEVCALKWSDIN 155

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAIL----------------EYYDLCPFDLNLNIQ 226
             + T+ +    ++I I+       + ++                E   +      +  +
Sbjct: 156 VSEGTITVNRTIERIYIIDGTKKHTELVINTPKTQNSCREIPMTKELLAMVKPLKKVVNE 215

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
                     P  P  ++ Y  +L   LG+P     H LRHSFAT  +  G D +++  +
Sbjct: 216 DFYVLTNDEYPTEPRTYRNYYGKLMEKLGIPK-LKYHGLRHSFATRCIEAGCDYKTVSVL 274

Query: 287 LGHFRLSTT-QIYTNVNSKNGGDWMMEIYD 315
           LGH  +STT  +Y + N +     + +++ 
Sbjct: 275 LGHSNISTTLDLYVHPNMEQKKRCIAKVFK 304


>gi|68304080|gb|AAY89698.1| FimB [Escherichia coli LW1655F+]
          Length = 164

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 60/158 (37%), Gaps = 2/158 (1%)

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVP 201
           L  +  T    ARN  +  L +  G R SE   L   +I      + I   K       P
Sbjct: 4   LLKAANTGPHAARNYCLTLLCFIHGFRASEICRLRISDIDLKAKCIYIHRLKKGFSTTHP 63

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           LL    +A+  +  +     +   +  +F   +G PL+   F   I       GL L   
Sbjct: 64  LLNKEVQALKNWLSIRTSYPHAESE-WVFLSRKGNPLSRQQFYHIISTSGGNAGLSLEIH 122

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            H LRHS    L + G D R IQ  LGH  +  T  YT
Sbjct: 123 PHMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYT 160


>gi|323128281|gb|ADX25578.1| DNA integration/recombination/inversion protein [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 374

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 87/233 (37%), Gaps = 21/233 (9%)

Query: 96  KSFLKYLKKRKITTESNILNMRNLKK---SNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           +  L+Y    ++   +   ++   +K        +  + ++    ++   L     + + 
Sbjct: 135 RRILQYGVTMQVIEHNPARDVIIPRKQNNKEHKVKFFSNQELKQFLNY--LDDLDLSSYE 192

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL--------- 203
           +  +  +   L   G RI E L+L   +I  ++ T+++    ++ +              
Sbjct: 193 NFFDYVLYKTLLATGCRIGEVLALEWSDIDLEKGTIKVSKTLNRYQETNTPKSKAGLRDI 252

Query: 204 --PSVRKAILEYYDLCPFDLNLN---IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
                   +L+ Y      L+ +    +  +F     K     + ++ +++  +  G+P 
Sbjct: 253 EIDRATVLLLKQYKNRQQVLSWDLGRSETIVFTPFTTKYAYACLLRKRLQKHFKAAGVP- 311

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
             + H  RH+ AT +L  G + + +Q  LGH  +S T   Y +   +     +
Sbjct: 312 DISFHGFRHTHATIMLYAGIEAKDLQYRLGHSNISMTLNTYVHATKEGAKKAV 364


>gi|207724624|ref|YP_002255021.1| integrase / recombinase protein [Ralstonia solanacearum MolK2]
 gi|206589846|emb|CAQ36807.1| integrase / recombinase protein [Ralstonia solanacearum MolK2]
          Length = 397

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/363 (15%), Positives = 125/363 (34%), Gaps = 63/363 (17%)

Query: 8   EIVSFELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           ++ + + L     WL +  E+       T+ +Y  +  + L++      + ++  ++   
Sbjct: 39  QVTADDDLSAVAAWLARYAEV-----PGTVATYRKEAERLLLWSVLQHGKPLS--SLTHE 91

Query: 67  SYTEIRAFISK-----------RRTQK------------IGDRSLKRSLSGIKSFLKYLK 103
                  F++            R+               +   S++ +++ + +   +L 
Sbjct: 92  DLLLYERFLADPQPAWRWVMASRKKLGRASPEWRPFAGPLSPTSVRHAMTILNALFAWLV 151

Query: 104 KRKITTESNI--LNMRNLKKSNSLPRALNEK---QALTLVDNVLLHTSHETKWIDARNSA 158
                  + +     R  K +  + R L+ +   +    ++ +  HT  +          
Sbjct: 152 DAGYLAGNPLSLTRRRGAKAAPRVTRYLSHELWEEVKETIEALPTHTERDRLHAARC-RW 210

Query: 159 ILYLLYGCGLRISEALSLTPQNIMD-------DQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
           +  +LY  GLR +E  S     +         D+  + +QGKG K R+VP    +   + 
Sbjct: 211 LFTVLYLAGLRAAEIASTPMGAVFRRRDAAGADRWWIEVQGKGSKTRLVPATDELIAELA 270

Query: 212 EYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQ---------------LRR 252
            Y        +  +       L    + +PL+ G     +++                + 
Sbjct: 271 RYRRAHGLPPSPQLGEARPLLLPLIGQEQPLSRGAVHLIVKEVFTLAAERLRARGPEWQA 330

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              L  S +AH +RH+  +H+     DLR ++  LGH  L+TT +Y +            
Sbjct: 331 QADLLASASAHWIRHTAGSHMTDQQVDLRFVRDNLGHASLATTSVYLHAEDDARHQATQA 390

Query: 313 IYD 315
            + 
Sbjct: 391 SHR 393


>gi|331660931|ref|ZP_08361863.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA206]
 gi|331051973|gb|EGI24012.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA206]
          Length = 200

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 65/181 (35%), Gaps = 8/181 (4%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K  N     L   +  +L+       +  T    ARN  +  L +  G R SE   L   
Sbjct: 4   KADNKKRNFLTHSEIESLL------KAANTGPHAARNYCLTLLCFIHGFRASEICRLRIS 57

Query: 180 NIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           +I      + I   K       PLL     A+  +  +     +   +  +F   +G PL
Sbjct: 58  DIDLKAKCIYIHRLKKGFSTTHPLLNKEIHALKNWLSIRTSYPHAESE-WVFLSRKGNPL 116

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +   F   I       GL L    H LRHS    L + G D R IQ  LGH  +  T  Y
Sbjct: 117 SRQQFYHIISTSGGNAGLSLEIHPHMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWY 176

Query: 299 T 299
           T
Sbjct: 177 T 177


>gi|237719819|ref|ZP_04550300.1| integrase [Bacteroides sp. 2_2_4]
 gi|229451088|gb|EEO56879.1| integrase [Bacteroides sp. 2_2_4]
 gi|295086377|emb|CBK67900.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 389

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 54/307 (17%), Positives = 115/307 (37%), Gaps = 25/307 (8%)

Query: 21  WLQNLEIE-RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR- 78
           +  ++ +E + LS+ T   Y    +  L ++    + K+    I  +    +  F +   
Sbjct: 83  FEYHMIMEGKKLSQSTCYQYGVTLKYLLSYVRI--KHKVADYDISIIDAAFVNEFFAYLQ 140

Query: 79  ---RTQKIGDRSLKRSLSGIKSFLKYLKK---RKITTESNILNMRNLKKSNSLPRALNEK 132
              R   +    +  +L  ++ F K ++     +    + +  ++  K   +    L+E+
Sbjct: 141 GYLRQDNMKRCDINGALKHMERFKKVMEMAFNNEWINRNPVKALKAHK-EKTDINELDEE 199

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTLRIQ 191
               L   +L                +       G+   +   LT +NI+     +L + 
Sbjct: 200 AVKRLSTVIL-------PPNLGIVRDLFIFAVYTGVSYEDMTRLTQKNIVIGIDKSLWLH 252

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            K  K  +   LP +  A+        +        PLF       ++  +  RY++++ 
Sbjct: 253 YKRVKTGVRVSLPLLEPALEIINRYDTYHKGGKKNQPLFP-----YVSNQIMNRYLKKVA 307

Query: 252 RYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           +  G+    T H  RH+FAT + L +   L ++  +LGH +++TTQ+Y  V        M
Sbjct: 308 KLAGVEDRVTYHVARHTFATTITLQHEIPLETVSKMLGHTKITTTQVYARVVDTKVMRDM 367

Query: 311 MEIYDQT 317
             + D  
Sbjct: 368 ATLKDMY 374


>gi|257880148|ref|ZP_05659801.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|294618944|ref|ZP_06698446.1| integrase [Enterococcus faecium E1679]
 gi|257814376|gb|EEV43134.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|291594805|gb|EFF26180.1| integrase [Enterococcus faecium E1679]
          Length = 258

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 100/240 (41%), Gaps = 29/240 (12%)

Query: 95  IKSF----LKYLKKRKITTESNILNM---RNLKKSNSLPR----ALNEKQALTLVDNVLL 143
           +K+F     K+  +R     + +  +   R  K +  + +     L++++        ++
Sbjct: 19  LKTFTGMIFKFANRRYGLKYNPVNGVSLARKPKTNEEIKKEKDGYLSKEEV------QMI 72

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----------LRIQGK 193
            +  ++    +R S I   L+  GLR  E +SLT  +   ++ T          ++   K
Sbjct: 73  ASKQKSSHQQSRYSLITKFLFLTGLRYGELISLTESDYDGNKITVSGTYDYELKIKTTTK 132

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
                    L S  K I++        +  N    +F    G P++   + + +R + + 
Sbjct: 133 NTGSYRTIELSSNAKEIIDQLIEENKLIKNNKDKYIFISKNGNPISIQAYNQSLRAVSKE 192

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMME 312
           L +    ++H LRHS  + L   G  L++I   +GH    TT +IYT+  +KN  + ++E
Sbjct: 193 LNIDKKVSSHMLRHSHISLLTELGIPLKAIMDRVGHEDSKTTLKIYTH-TTKNMQNQLVE 251


>gi|256840355|ref|ZP_05545863.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737627|gb|EEU50953.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 393

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 88/253 (34%), Gaps = 20/253 (7%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL-------KKRKITTESNILN 115
           ++ +     + FI+  +T    D   + S +  + F+ Y         +  +  ++  L 
Sbjct: 138 LKDVDKEFCKGFITFLKTCTYNDGKKQLSTTTCRMFVNYFGSSLAKAVRDGLIEQNPFLL 197

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +   +K     + + E++ LT+ +  +    +     +    A L+  +  GLR S+  +
Sbjct: 198 LEAKEKPQ---KRVAEREFLTIEE--IKKVMNTPCRYELVKKAFLFSCF-TGLRYSDMKA 251

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           L           +     G    I  +    +  +               +  +      
Sbjct: 252 LNWS-------EIHKAADGKTEYIDHIQVKTKDRVTIPLSEETKKWMPKREEGIDNIFHN 304

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             +     +  +++     G+    T H  RH+ AT LL+ G  +  +  ILGH  +  T
Sbjct: 305 LTITSTTVEVVLKEWMEAAGITKHITYHCSRHTAATMLLTLGASIYVVSKILGHKSIKMT 364

Query: 296 QIYTNVNSKNGGD 308
           +IY  +  K   +
Sbjct: 365 EIYAKIVDKKKLE 377


>gi|253999172|ref|YP_003051235.1| integrase family protein [Methylovorus sp. SIP3-4]
 gi|253985851|gb|ACT50708.1| integrase family protein [Methylovorus sp. SIP3-4]
          Length = 338

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 65/330 (19%), Positives = 123/330 (37%), Gaps = 47/330 (14%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKL-TLQSY------ECDTRQFLIFLAFYTE 55
              L + +S EL + R        I+R  S   TL +       +   +Q   F   +  
Sbjct: 33  AQKLHDKISTELWEGR-------WIDRNQSGNMTLDAAFDKVMAQRWEKQRSWFSVIHNY 85

Query: 56  EKI-----TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLK--YLKKRKIT 108
            +          + +++   +   I + R  +  D ++ RS++ I + LK        I 
Sbjct: 86  NRFKKYLKGSTKLSEITRARLWEVIGEMREDEYTDGTINRSMAVISTILKTARDDWEVIV 145

Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
               I  +  LK      R L + + L  ++       H     D  +  ++ +L   G 
Sbjct: 146 K---IPKVPLLKVGRGRMRWLKDDEELPFLEWFRKQGDH-----DMVD--LIEVLLETGC 195

Query: 169 RISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           R+SE L L   ++  ++  L +   K  +    PL     +  L  Y          I +
Sbjct: 196 RVSEILRLKDTDVHINERRLYLGITKSGEEEYQPLSEYALQIFLRRY---------KIGV 246

Query: 228 PLFRGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
           P F G+ R   L+     +                 HT+RH+ A+ L+ +G DL+ +Q  
Sbjct: 247 PPFEGVSRWGALSRFQTAKRHLGYAD----DHELVLHTMRHTCASRLVQSGVDLKRVQEY 302

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           + H  ++TT IY  ++S+        ++D+
Sbjct: 303 MRHKDINTTLIYAKLSSEENAKT-ASVFDK 331


>gi|326791844|ref|YP_004309665.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326542608|gb|ADZ84467.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 320

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 60/300 (20%), Positives = 127/300 (42%), Gaps = 36/300 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L+N + ++  S+ T++ Y  D R FL +   +  E +++   ++  + E + F+++ 
Sbjct: 23  QQYLRNCKADK-KSEGTIREYGYDLRFFLCWNLLFN-ENMSVLDFKKRHFEEFKYFMAEE 80

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE----SNILNMRNLKKSNSLPRALNEKQA 134
           R  K+ +  +   L  I++ + Y +      E    +    ++ L+K    P A   ++ 
Sbjct: 81  R--KVSNARINHLLCAIRTMMGYAEDDDDEYEEYFRNPASRIKGLEKEPVRPVAFLSQEQ 138

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           + L+ N LL           ++  +L +LY  G R++E L +T  +    +  L+++ KG
Sbjct: 139 IDLLRNYLLE------HKMYQHLCLLDILYDSGARVNEVLQVTDSDT-TSKGYLKVKCKG 191

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            +   + L    +++I          L+   +   ++   G        + ++  L + L
Sbjct: 192 GRYEYILLHERSKESIQ-------LHLSTKKEGAFWQSKYGPAETTSTLRGWVNDLYKIL 244

Query: 255 -GLPLST---TAHTLRHSFATHLLSNGG----------DLRSIQSILGHFRLSTTQIYTN 300
            GL  ST   T H+ RHS   +L +              +  IQ I+ H  +  T+ Y  
Sbjct: 245 KGLDPSTPCFTPHSFRHSVIENLGNGTHYLCEKLGRAFTIEEIQIIVHHKSVDMTKSYMK 304


>gi|89147596|gb|ABD62657.1| integrase [uncultured bacterium]
 gi|89147608|gb|ABD62663.1| integrase [uncultured bacterium]
          Length = 167

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 2/120 (1%)

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
             +    R+       R      + R+   +Y               +    R   +  G
Sbjct: 49  DLEAGFGRVYLPFALDRK--YKNAAREWCWQYVFPSSRLSVDPRSSSVEPVRRRHHVEEG 106

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             Q  +++  R  G+    T HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 107 ALQLAMKKAVRASGIQKPATCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 166


>gi|325288243|ref|YP_004264424.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324963644|gb|ADY54423.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 537

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 56/279 (20%), Positives = 113/279 (40%), Gaps = 18/279 (6%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           L+  T+++     R F  F       +I+   I     ++    ++ R T  +       
Sbjct: 253 LAGSTVKTARSAIRTF--FFELEARGRISFDGITLAEVSDTITHMATRYTSGLHS----- 305

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLVDNVLLHTSHET 149
           ++  ++ FL +L +   T E+  L +  +    ++ R      +   L+D   L T+   
Sbjct: 306 AIFSVRIFLLHLYENNFTPENLSLAVPEMVARRTVFREGFTGDETACLLDEPDLATA--- 362

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRK 208
             +  R+ A++ L    GLR  + ++L  ++I      +RI Q K  K   +PL P    
Sbjct: 363 --VGKRDYAMMLLSAQTGLRACDVVNLKREDIDWRAREIRIVQQKTRKPLSLPLEPESGN 420

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST---TAHTL 265
           AI +Y      + +L   + L      +P+N       + +      +         H+ 
Sbjct: 421 AIADYLLHARPESDL-PYIFLCHTGALRPINNRSASALVTKYLHRAKIASDIPHRGFHSF 479

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R +F T LL N   L  ++ +LGH ++ + + Y +V+ +
Sbjct: 480 RRAFGTRLLQNEIPLELLRQLLGHSKIDSAKPYLSVDEQ 518


>gi|271499297|ref|YP_003332322.1| integrase family protein [Dickeya dadantii Ech586]
 gi|270342852|gb|ACZ75617.1| integrase family protein [Dickeya dadantii Ech586]
          Length = 363

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 85/233 (36%), Gaps = 33/233 (14%)

Query: 83  IGDRSLK---RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           +  R++    R+LS +  F    K       + +  +   K +      L   +   ++D
Sbjct: 129 VKPRTVNLEQRNLSAV--FGTLKKLGHWDAPNPLSGLPTFKIAQQELAFLAPNEIKRVLD 186

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199
                        +     +  +    G R SEA  L+ Q +   + T   + KG K R 
Sbjct: 187 ACAESA-------NPHLLLVTKICLATGARWSEAEGLSGQQVTPYRITYT-RTKGKKNRT 238

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VP+   +   I                  LF   R        F+R I +      LP  
Sbjct: 239 VPISRELYDEI------------PRKSGKLFSPCRK------AFERAINRTGIQ--LPDG 278

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              H LRH+FA+H + NGG++  ++ ILGH  +  T IY +    +  D + +
Sbjct: 279 QCTHVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAHFAPDHLEDAITK 331


>gi|188526757|gb|ACD62260.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 50/94 (53%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 65  RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGIMKPATPHTLRH 124

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 125 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|220929268|ref|YP_002506177.1| integrase family protein [Clostridium cellulolyticum H10]
 gi|219999596|gb|ACL76197.1| integrase family protein [Clostridium cellulolyticum H10]
          Length = 413

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 94/320 (29%), Gaps = 58/320 (18%)

Query: 46  FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR---------RTQKIGDRSLKRSLSGIK 96
           +   L     + +    I  L    +  F             R  K+   S+      + 
Sbjct: 95  YSGLLKGRVLKVMGDTKIIDLKPLHLINFYENLQELGIREDGREGKLSTNSILHYHRALN 154

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
           +      +  +  E+    +R  K        L+E Q   L+  +       + +     
Sbjct: 155 AMFGDGVRWGLIKENPCSKVRPPKVVKKEMSCLDEDQIPQLISALCNEPIDISTF----- 209

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----------------GKGDKIRIV 200
              + L    GLR  E   L   N+    +T+ ++                     IR +
Sbjct: 210 ---ITLDLVTGLRRGELCGLQWDNVNLKDNTIVVEQAVSYTPETGTIIKTPKTKSSIRKI 266

Query: 201 PLLPSVRKAILEYYDLCPFDL--------------------NLNIQLPLFRGIRGKPLNP 240
            +  +    +  Y                                   LF    G  ++P
Sbjct: 267 TIPKTTSDLLSIYRKWWLEQKIKVGDQWQKSAREEVEKNGQTWEDPEYLFTTWDGYVMHP 326

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYT 299
               +  ++  +   LP     H LRH+ AT L+  G ++R++ + +GH   + T  IY+
Sbjct: 327 DTLTKTFKKFIKRNNLP-DIRLHDLRHTAATMLIHAGLNIRAVAARMGHENPNVTLAIYS 385

Query: 300 NV---NSKNGGDWMMEIYDQ 316
           +      K   D M  +  +
Sbjct: 386 HALLSADKQAADVMGNLIKK 405


>gi|284045888|ref|YP_003396228.1| integrase [Conexibacter woesei DSM 14684]
 gi|283950109|gb|ADB52853.1| integrase domain protein SAM domain protein [Conexibacter woesei
           DSM 14684]
          Length = 180

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 65/149 (43%), Gaps = 7/149 (4%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           E  ++L+  EIER L+ LT ++Y  D R    FL       I +  +  +    +R F++
Sbjct: 4   EVADFLRYCEIERRLAPLTCKAYARDVRACTTFL-----HSIDVHDLAAVRVAHLRRFLA 58

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                +    S  R+++ ++ F ++  +           +R  KK ++LP  L+ ++   
Sbjct: 59  AEADHRPAPASQARTIAALRCFFRFCVENDYLDRDPAAVLRAPKKRDALPDVLDSRELRR 118

Query: 137 LVDNVLLHTSHETKWI--DARNSAILYLL 163
           L+         + ++   D R+  +L LL
Sbjct: 119 LLSTPGSGQVWQRRFAGRDERDRLMLALL 147


>gi|237723043|ref|ZP_04553524.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229447565|gb|EEO53356.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 403

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 59/332 (17%), Positives = 124/332 (37%), Gaps = 38/332 (11%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYEC------DTRQFLIFLAFYTEE 56
            N++PE +      ER+     L + R     +  +Y        + RQF+        +
Sbjct: 97  ANSVPEYLLQAGEVERER----LRV-RSKEINSTSTYRQSKTTQLNLRQFI---ESRGMK 148

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
            I    I +      + F+ K    + G   +   L  +   +     R+I   + I ++
Sbjct: 149 DIAFSDITEEFAESFKVFLKKELGHRNGH--VNHCLCWLNRLIYIAVDREILRANPIEDV 206

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              +K     R ++  +   +++     T      ++      ++     GL  ++  +L
Sbjct: 207 AYERKETPKLRHISRSELKRMME-----TPLPDPMMELARRTFIFSSL-TGLAYADTRAL 260

Query: 177 TPQNI---MDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
            P++I    + +  +RI+  K D    +PL P   + +  Y          +   P+F  
Sbjct: 261 HPRHIGTTSEGRRYIRIRRAKTDVEAFIPLHPIAGQILELY-------KTTDDDRPVFPL 313

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                    V    +  +   LG+  + + H  RHSF T  L+ G  + SI  ++GH  +
Sbjct: 314 PV-----RDVLWYEVHGMGVALGMKENLSYHMARHSFGTLTLTAGIPIESIARMMGHTNI 368

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
            +TQ+Y  V  +     M  + ++  P+  ++
Sbjct: 369 DSTQVYAQVTDRKISSDMNRLMERRKPAAGKE 400


>gi|89147406|gb|ABD62563.1| integrase [uncultured bacterium]
          Length = 163

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/111 (34%), Positives = 58/111 (52%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +G G       L      A  E+     F  +     P    +R   ++  + Q+ +++ 
Sbjct: 52  RGHGRVYLPYALERKYPNASAEWCWQWVFPTDNLSADPRTGQVRRHHVSEDILQQAVKRA 111

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            +  G+    + HTLRHSFATHLL +G D+R+IQ +LGH  +STTQIYT+V
Sbjct: 112 VKRAGVTKRASCHTLRHSFATHLLEDGYDIRTIQELLGHADVSTTQIYTHV 162


>gi|320013192|gb|ADW08040.1| integrase family protein [Streptomyces flavogriseus ATCC 33331]
          Length = 363

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 96/297 (32%), Gaps = 39/297 (13%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-------- 77
            I    S  T +SY    R F  F   +    +T+           R ++          
Sbjct: 55  WIAHQRSLNTQKSYARGFRIFEEFAREHGAHPLTVSFPL---ADTFRLYLETTPTWVRVK 111

Query: 78  --------RRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSN---SL 125
                   R  +   D S   +LS   SF  Y         ++    +R           
Sbjct: 112 GGRRGEMVRAGEPYSDASRANALSASSSFYSYLDIVSDTPLKNPFDAVRRPVIDPGYSPT 171

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMD 183
           P    E Q   LV  V     H       R  AIL LLY C LRI   LS   ++     
Sbjct: 172 PGY-TEAQWAALV--VTARDHHRVAAYRKRAYAILLLLYTCCLRIDSLLSAKVEHLGYDQ 228

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
               ++++ KG   R  P+ P    A+ +Y       L+      L     G  L+    
Sbjct: 229 GHHVIKVKVKGGSWRNKPIPPIAWDALQDY-------LDGRKTGWLICTASGGQLDEPAV 281

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR--SIQSILGHFRLSTTQIY 298
            + ++ L +  GLP     H ++    TH L+   D R   IQ    H    TTQ Y
Sbjct: 282 WQLLQSLAKRAGLPPR-GPHGVKGDAVTHALAK-KDARPDKIQRWADHHDSRTTQRY 336


>gi|215408012|emb|CAS02333.1| integron integrase [uncultured bacterium]
          Length = 157

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 49/93 (52%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 65  RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 124

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           SFAT LL +G D+R++Q +LGH  +STT IYT+
Sbjct: 125 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 157


>gi|167758571|ref|ZP_02430698.1| hypothetical protein CLOSCI_00911 [Clostridium scindens ATCC 35704]
 gi|325662801|ref|ZP_08151370.1| hypothetical protein HMPREF0490_02110 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|167663767|gb|EDS07897.1| hypothetical protein CLOSCI_00911 [Clostridium scindens ATCC 35704]
 gi|325470853|gb|EGC74082.1| hypothetical protein HMPREF0490_02110 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 411

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 118/344 (34%), Gaps = 61/344 (17%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + + +  +  L + T  SY       L     Y  +    + I  + Y+++  F      
Sbjct: 77  FDRYMSTKYNLRESTKSSY-------LYTYDHYVRDTFGKKRIADIKYSDVLQFYYYLLN 129

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-----RNLKKSNSLPRALNEKQA 134
           + KI   +L      +    +   + +I   +    +     R   K+  +  AL  +Q 
Sbjct: 130 EVKISLGTLDTVHCLLHPTFQLAVRDEIIRNNPTDGVMKEISRESGKNRGIRHALTVEQQ 189

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-- 192
              ++ +  H       I      +  +L G G RI EAL L  Q++  D+ T+ I    
Sbjct: 190 RAFMEYIANH------PIYYHWWPMFTVLLGTGCRIGEALGLRWQDLDYDKRTISINHSL 243

Query: 193 -------------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----P 228
                                  IR +P+L  V+ A    Y+    +     ++      
Sbjct: 244 SYYQKPESNKSVLRISKPKTEAGIRTIPMLDIVKDAFEMLYEEQLENGFNESEIDGMSGF 303

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLG---------------LPLSTTAHTLRHSFATHL 273
           +F    G   NP      I+++                    +  + + H LRH+F T L
Sbjct: 304 IFCNRFGMVPNPQTVNHTIKRIANSYNADEVVRAKKERRDPIILPNFSCHHLRHTFCTRL 363

Query: 274 LSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQ 316
             N  +L+ IQSI+GH  + TT  IY     +   +    +  +
Sbjct: 364 CENETNLKVIQSIMGHRNIETTMDIYAEATEEKKQESFENLAAK 407


>gi|160891067|ref|ZP_02072070.1| hypothetical protein BACUNI_03514 [Bacteroides uniformis ATCC 8492]
 gi|156859288|gb|EDO52719.1| hypothetical protein BACUNI_03514 [Bacteroides uniformis ATCC 8492]
          Length = 421

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 54/301 (17%), Positives = 108/301 (35%), Gaps = 30/301 (9%)

Query: 26  EIERGL-----SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR- 79
           E+E+       S  T   Y         FL  +   ++    +++LS   I  + +  R 
Sbjct: 119 EMEKQYKAGMKSLSTFTKYRIGCAYVGEFLQSHY--RVKDIALKELSLPFITNYETFLRI 176

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            +++   S    +  +++ +      +   +         K   +    L +++   L++
Sbjct: 177 DKQLKINSAMVFVRNLRAMIFRAIDNEWLVKDPFRRYE-YKNEETTREILTKEEIHLLME 235

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRIQGKGDK 196
                T    K +       L+  +  GL   +  +L  +N     DD   + I  +   
Sbjct: 236 -----TPITRKHMGLVRDLYLFCCF-TGLAFIDLYNLKEENIKTFFDDGEWIVIHRQKTG 289

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
                 L    K I+E +     D  +    P                R +++L +  G+
Sbjct: 290 TEADIKLLDYPKQIMEKHRGLCKDGRVFPVPPY-----------RSCLRSLKRLGKKCGI 338

Query: 257 PLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
               + H  RHSFAT   LSNG  + ++ S+LGH  + TTQ+Y  +  +     + ++  
Sbjct: 339 TKPLSWHVSRHSFATSVCLSNGVPIETVSSMLGHKDIKTTQVYAKITKEKLSKDVEKLSQ 398

Query: 316 Q 316
           Q
Sbjct: 399 Q 399


>gi|50955878|ref|YP_063166.1| phage-related integrase/recombinase [Leifsonia xyli subsp. xyli
           str. CTCB07]
 gi|50952360|gb|AAT90061.1| phage-related integrase/recombinase [Leifsonia xyli subsp. xyli
           str. CTCB07]
          Length = 256

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/208 (24%), Positives = 80/208 (38%), Gaps = 21/208 (10%)

Query: 127 RALNEKQALTLVD------NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           R L   +   L D         L    +      R++ +L ++YG GLR  EA+ L   +
Sbjct: 35  RPLTRGELQRLFDRADEEVEARLAAGRKGAAAAYRDATLLKVVYGWGLRSHEAIMLDTVD 94

Query: 181 --------IMDDQSTLRIQ-------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
                      +   LR++       G      +  ++P    A+ +Y +     +    
Sbjct: 95  LFRNPKVSAFGELGMLRVRFGKSSRGGPPKLRTVASVVPWAVTALQDYLENMLPLMRTGT 154

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
              ++   R + L          + R  LGL    T H LRHS+ATHL+ +G D   +Q 
Sbjct: 155 SSAMWFSERSRRLGVRAIGDRFARYRDELGLDSRLTPHCLRHSYATHLIEDGHDPVFVQR 214

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            LGH   STT IYT+V+       +   
Sbjct: 215 QLGHVYQSTTSIYTHVSEDFANRLLQAA 242


>gi|110639719|ref|YP_679929.1| integrase [Cytophaga hutchinsonii ATCC 33406]
 gi|110282400|gb|ABG60586.1| integrase [Cytophaga hutchinsonii ATCC 33406]
          Length = 308

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 54/267 (20%), Positives = 107/267 (40%), Gaps = 26/267 (9%)

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           +   E++ F+ ++  Q +  +++K  L  +K  LK+  K K  T          ++    
Sbjct: 48  VEEVEVQTFVFQKLQQGLSQKTIKDMLIVLKMVLKFGAKNKWLTYHPFDIQFPTQREKQT 107

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
              L+      ++  V  H +             +Y+    G+RI E  +LT +++  ++
Sbjct: 108 IEVLSRGDQRKVMHYVQEHFTFRNLG--------IYICLSAGIRIGEICALTWEDVDTER 159

Query: 186 STLRIQGK-------GDKIRIVPLL---PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
             + I+          D +R   L+   P  + +I E          L     +      
Sbjct: 160 GIIHIRRTIQRIYNIEDGMRKTELMLDTPKTKNSIREIPMSGDLLKMLKPVKKIINNSFF 219

Query: 236 ------KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
                 KP  P  ++ Y ++L + L LP     H LRHSFAT  + +  D +++  +LGH
Sbjct: 220 VLTNDVKPTEPRTYRSYYKKLMKELALP-DLKFHGLRHSFATRCIESKCDYKTVSVLLGH 278

Query: 290 FRLSTT-QIYTNVNSKNGGDWMMEIYD 315
             +STT  +Y + N +     + +++ 
Sbjct: 279 SNISTTLNLYVHPNLEQKKKAIDQMFK 305


>gi|296273220|ref|YP_003655851.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
 gi|296097394|gb|ADG93344.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
          Length = 383

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 57/304 (18%), Positives = 119/304 (39%), Gaps = 16/304 (5%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + + ++IE G    T +      +        +         I  + Y+ I+ FI+    
Sbjct: 87  YFEYIDIE-GKKWSTQE-----LKTKKSRFKRWILPHFGKMNIHDVRYSHIQKFINDIDD 140

Query: 81  QKI-GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK-SNSLPRALNEKQAL--- 135
           +K+   ++ +   S I+SF K+  K       N     ++K   N +P  L  +Q +   
Sbjct: 141 KKLLARKTQENLKSSIQSFFKFCIKEGYLNTGNPAQYVDIKAYDNHVPMTLTLEQIIRFY 200

Query: 136 -TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
            T++D     + +++  +D R   ++ +L   G R +EA +L    I    +   I    
Sbjct: 201 QTIIDIDCHSSPNQSANLDNRKKRLMLILMIHGRRWNEAQNLCWSEIDFISNLYIIPAHK 260

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K +            LE  +L    ++   +  LF   + K         + + +++  
Sbjct: 261 SKTKKTQKHKMTDFLRLELMELKV--ISKEGEDFLFINPQTKK-PYSSINTFFKTIKKKA 317

Query: 255 GLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            +P +      RH   T    N G  L +I+ +L H  ++TT+IY++ +S N    +  +
Sbjct: 318 DIPKTFRCQDFRHVVGTVAYQNLGIPLENIRDVLAHGSVTTTEIYSDKDSLNSRKVLTSL 377

Query: 314 YDQT 317
           ++  
Sbjct: 378 FEMF 381


>gi|254701428|ref|ZP_05163256.1| Phage integrase [Brucella suis bv. 5 str. 513]
 gi|261751967|ref|ZP_05995676.1| phage integrase [Brucella suis bv. 5 str. 513]
 gi|261741720|gb|EEY29646.1| phage integrase [Brucella suis bv. 5 str. 513]
          Length = 308

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 103/276 (37%), Gaps = 31/276 (11%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97
           S++ + R FL  +    +E +            + + I   R +   + ++ R ++ +  
Sbjct: 57  SHKYNVRSFLGEI----DEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSK 112

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
            L+  K  K+    N+      K+     R L +++   L   +                
Sbjct: 113 LLR--KAHKMGDIFNLPEFIRQKERVGRIRFLEQEEEKRLFAAIKSRCEDS--------Y 162

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            +   L   G  + EA+ LT  +I + + T  +  K ++ R VPL    RKA        
Sbjct: 163 RLSVFLVDTGCHLGEAIGLTWNDIQEQRVTFWV-TKSNRSRTVPLTRRARKA-------- 213

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLS 275
                  ++ P         LN   F++   + +  +GL        H LRH+ A+ L+ 
Sbjct: 214 SHIPRERLKGPF------SMLNQVRFRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVR 267

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            G D+R +Q  LGH  L  T  Y ++ + +    + 
Sbjct: 268 GGIDIRRVQMWLGHQTLQMTMRYAHLATHDLDSCVK 303


>gi|56807895|ref|ZP_00365725.1| COG0582: Integrase [Streptococcus pyogenes M49 591]
 gi|209558929|ref|YP_002285401.1| Integrase [Streptococcus phage NZ131.1]
 gi|209540130|gb|ACI60706.1| Integrase [Streptococcus phage NZ131.1]
          Length = 381

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 100/271 (36%), Gaps = 32/271 (11%)

Query: 63  IRQLSYTEIRAFISKRRTQKIG---DRSLKRSLSGIKSFLKYLKKRKITTESNILNM--- 116
           + +L+ + I+ FI+    Q +      S+ R +      L+Y    ++   +   ++   
Sbjct: 110 VDKLTVSYIQRFINDLLNQLVHYGVVHSINRRV------LQYGVSLQLLPFNPARDVMLP 163

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           +  KK N   + +  +    L+  +    +   K+    +  +  +L   G R  E ++L
Sbjct: 164 KVPKKENKAIKFIAPEDLKALMAYMEKLAN--KKFSYFFDYVLYSVLLATGCRFGEVVAL 221

Query: 177 TPQNIMDDQSTLRIQG-------------KGDKIRIVPLLPSVRKAILEY---YDLCPFD 220
              +I  +  T+ I                   +R++ +       +  Y         +
Sbjct: 222 EWSDIDLENGTISITKNYSRLLKLIGTPKSKAGVRVISIDKKTINLLRLYKNRQRQLFIE 281

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
               +   +F     +  N    Q  + +    +G+P   T H  RH+ A+ LL+ G   
Sbjct: 282 TGARVSAVVFSTPLKEYQNMATRQESLDRRITEVGIPR-FTFHAFRHTHASLLLNAGISY 340

Query: 281 RSIQSILGHFRLSTTQ-IYTNVNSKNGGDWM 310
           + +Q  LGH  L+ T  IY +++     + +
Sbjct: 341 KELQYRLGHATLAMTMDIYGHLSMDKEKEAV 371


>gi|301162166|emb|CBW21711.1| putative bacteriophage integrase [Bacteroides fragilis 638R]
          Length = 371

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 62/310 (20%), Positives = 117/310 (37%), Gaps = 38/310 (12%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           F+  K + ++L+     + L K   +          +    +   K T + I      + 
Sbjct: 86  FDRYKLKADFLEYYR--KQLRKHDQKW-----EFVYLHFRNFVHGKCTFEEIDIDLCNKF 138

Query: 72  RAFISK----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
           R ++      RR   I   S     S  + FLK L +  +   +    +  ++  + +  
Sbjct: 139 REYLLSAKKLRRNGPITRNSASGYWSTFRGFLKILYRNGMIKTNVNDFLDKIETEDVVKE 198

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD---- 183
            L+ ++   L +        +T         +   +    LRIS+ LSL  ++I+D    
Sbjct: 199 YLSVEELYKLAETPCKKPILKTAS-------LFSCM--TSLRISDILSLCWEDIVDYSAG 249

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
            +    I  K     I+P+       I           +   +  +F+G     L     
Sbjct: 250 GKCVHIITQKNKAEDIIPISEEALGLI---------GYSSEKKGLVFKG-----LMRSWT 295

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           Q  +++  R  G+  + T H+ R +FAT   + G D+R+IQSI+ H  ++TTQ Y  V  
Sbjct: 296 QIPMKEWIRSAGITKNITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVD 355

Query: 304 KNGGDWMMEI 313
            N  +   +I
Sbjct: 356 ANKREASKKI 365


>gi|301300085|ref|ZP_07206303.1| site-specific recombinase, phage integrase family [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300852317|gb|EFK79983.1| site-specific recombinase, phage integrase family [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 373

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 60/310 (19%), Positives = 119/310 (38%), Gaps = 29/310 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T  +Y+              ++ ++   I ++     R FI++   +     ++ + 
Sbjct: 78  SERTKLTYKNAFNVL--------KKHLSGIPIEEMDRRLYRKFIAEF-GKDHAKSTVSKF 128

Query: 92  LSGIKSFLKYLKKRKITTESNILN---MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            S   + +K        T+  I     + N KK+  +   LN ++   L + +      +
Sbjct: 129 NSLYHACVKDAMYDGDVTKDFIAGTDIVYNRKKTRKI-DYLNIEETKKLTNYL-----TD 182

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI---RIVPLLPS 205
           T   +     ++ L    G R+ E  +LT ++I  +  T+ I    ++           S
Sbjct: 183 TLNHNFTAKYMILLAIATGARLGEMQALTWKDINFNFHTIDINKSWNETTKKFQPTKNES 242

Query: 206 VRKAILEYYDLCPF--DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TA 262
            ++ I    +   +  DL  N    +F              + +R   + LG+   +   
Sbjct: 243 SKRIIRVNQNTLDYLQDLKQNNHDMVFINQYNTIPTSSAVNKTLRMCLKELGIDKPSFHF 302

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK---NGGDWMMEIYDQTH 318
           H+LRH+   +LLS   DL  I   LGH  +STT ++Y+ +  +      + +  I D+  
Sbjct: 303 HSLRHTHVAYLLSENIDLYIISKRLGHSDISTTSRVYSYLIDEYKNRADNKIENIVDKLF 362

Query: 319 PSITQKDKKN 328
              T  DKKN
Sbjct: 363 DD-TVDDKKN 371


>gi|295107441|emb|CBL04984.1| Site-specific recombinase XerD [Gordonibacter pamelaeae 7-10-1-b]
          Length = 264

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/300 (15%), Positives = 104/300 (34%), Gaps = 41/300 (13%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++ + L+ +   +  T+ SY    +Q           +  I  I   S  E + ++   
Sbjct: 2   KDFEEYLQAQD-YAANTISSYLFAAKQL----------EQNISPITNQSLLEHKEWLVS- 49

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNEKQALT 136
                  ++    +  I  +L +L    +        ++ ++      L   ++  +   
Sbjct: 50  ---SFAPKTANNRIGAINVYLDFLGYNGM-------RLKGVRVQQKPFLNNVISNDEYRR 99

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L D +       T+  D     ++  L   G+R+SE      ++       + I  KG K
Sbjct: 100 LRDGL-------TRDEDWFWYFVVRFLACTGVRVSELR--KFEHAHVLAGHMDIVSKGQK 150

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +R V +  +++   L +            +  LF       L        +++      +
Sbjct: 151 LRRVYIPANLQTEALSWCTR-----EGKTEGVLFGDRS--ALTSRGIALGLKRAAERYDI 203

Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                  H+ RH FA + +S   D+  +  ++GH  + TT+IY    +      + E  D
Sbjct: 204 NPDVVYPHSFRHLFAKNFISKNPDIAFLADLMGHESIETTRIYLRRTAAEQRRAVDEAID 263


>gi|282859069|ref|ZP_06268201.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282588149|gb|EFB93322.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 389

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/274 (20%), Positives = 102/274 (37%), Gaps = 27/274 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K TL  Y    +    FL   Y  + I ++ +     ++   F+  R  +     ++  
Sbjct: 130 AKGTLLKYRTVYKHMQEFLDIRYHVKDIALKELTPAFISDFEMFL--RTDKHCCTNTVWL 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +  +++ +      +  T         +KK  +    L + +   L++  L +   E  
Sbjct: 188 YVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKDEIRLLMEGKLKNAKQE-- 244

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRI-QGKGDKIRIVPLLPSV 206
                   +       GL  ++  +LT +N     D+   + I + K   +  + LL   
Sbjct: 245 ----LYRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRQKTGVVSNIRLLDIA 300

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            + I +Y  LC           +F          G     IR + +  G+    T H  R
Sbjct: 301 NRIIGKYRGLC-------GDGRIFPVPHYNTCLAG-----IRAVAKRCGITKHITWHQSR 348

Query: 267 HSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYT 299
           H+ AT   LSNG  + ++ S+LGH  + TTQIY 
Sbjct: 349 HTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYA 382


>gi|148285126|ref|YP_001249216.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|146740565|emb|CAM81175.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
          Length = 442

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/295 (16%), Positives = 110/295 (37%), Gaps = 21/295 (7%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
            S    +S++  + +  I+ AF   +KI+     +++  +I+  I    T +    +   
Sbjct: 131 YSSHHHRSWKRTSERVKIYAAFLYNKKIS-----EITKEDIQK-IFDEITARKHYVTANN 184

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL----VDNVLLHTS 146
            L  +        +  +  ++ +  ++  K+ +   R +  ++   L    V+      +
Sbjct: 185 ILMNLSPIFNKAIEWGLIDKNPVHGIKRHKQESR-SRYVTNEEMERLMKVLVEKENSQLT 243

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206
            E K      +  L++      R    L++    I   +  +    K        L   +
Sbjct: 244 EEQKQSKISETLFLFIALFTAARSGNILAMRWDEISLSEK-IWCIPKTKSKNGKQLYIGL 302

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              ++               LP       K ++     R   ++R+  G+P + T H LR
Sbjct: 303 ADKLIAVLQNRKLCSKSEWILPS-VKDNSKHISSSTIHRAWAKIRKKAGIP-NVTIHDLR 360

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIY-------TNVNSKNGGDWMMEIY 314
            +FAT +++NG  + +I  ILGH   +TT+IY         + +    + M+ I+
Sbjct: 361 RTFATWMINNGETVDTISQILGHSNTNTTKIYIIHSLAMAKIATNKVVENMLRIF 415


>gi|315029442|gb|EFT41374.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4000]
          Length = 392

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 60/335 (17%), Positives = 126/335 (37%), Gaps = 59/335 (17%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q W +     R L++  + +Y+    Q  I   +   +K     +  LS  E++ F+   
Sbjct: 66  QKWFEYY---RSLNEQKVATYDKREEQVKILNRWIGGKK-----LSSLSSEELQKFLFIL 117

Query: 79  RTQK-------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP----- 126
           + +            SL+  +  +     Y KK+ +  E+ +  ++  K   SL      
Sbjct: 118 KEKGIDGVNVGYAKNSLQSLVQVLNMVFNYCKKKNLINENPMKFVKMPKYQLSLKDLKES 177

Query: 127 ------RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                 + L   +    ++  ++       + +     + ++L+  G  +SEAL+L PQ+
Sbjct: 178 VNSLEDKFLTVDELRAFLNYGIV-------YEELPMCVLFHVLFYTGCCVSEALALQPQD 230

Query: 181 IMDDQSTL---------------RIQGKG--DKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
           I  +++ +               RI+        R VP+ P V + + E  D+       
Sbjct: 231 IDFERNEILFYKQTAVKGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRN 290

Query: 224 N----IQLPLF----RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
           +     +  LF     G RG P        ++++     G+      H  RH+ A+ L++
Sbjct: 291 SNFVVDETYLFVYLDPGKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMAS-LVA 349

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                  ++  LGH   +T++IY ++ S      +
Sbjct: 350 EYCSWDVLKDRLGHTDSTTSKIYRHLTSTEKLKPL 384


>gi|255690122|ref|ZP_05413797.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM
           17565]
 gi|260624404|gb|EEX47275.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM
           17565]
          Length = 337

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 61/310 (19%), Positives = 119/310 (38%), Gaps = 38/310 (12%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           F+  K + ++L+     + L K   +          +    +   K T + I      + 
Sbjct: 52  FDRYKLKADFLEYYR--KQLRKHDQKW-----EFVYLHFRNFVHGKCTFEEIDIDLCNKF 104

Query: 72  RAFISK----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
           R ++      RR   I   S     S  + FLK L +  +   +    +  ++  + +  
Sbjct: 105 REYLLSAKKLRRNGPITRNSASGYWSTFRGFLKILYRNGMIKTNVNDFLDKIETEDVVKE 164

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD---- 183
            L+ ++   L +          K    + +++   +    LRIS+ L+L  ++I+D    
Sbjct: 165 YLSVEELYKLAET-------PCKKPILKIASLFSCM--TSLRISDILALCWEDIVDYSAG 215

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
            +    I  K     I+P+       I           +   +  +F+G     L     
Sbjct: 216 GKCVHIITQKNKAEDIIPISEEALGLI---------GYSSEKKGLVFKG-----LMRSWT 261

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           Q  +++  R  G+  + T H+ R +FAT   + G D+R+IQSI+ H  ++TTQ Y  V  
Sbjct: 262 QAPMKEWIRSAGITKNITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVD 321

Query: 304 KNGGDWMMEI 313
            N  +   +I
Sbjct: 322 ANKREASKKI 331


>gi|167760423|ref|ZP_02432550.1| hypothetical protein CLOSCI_02797 [Clostridium scindens ATCC 35704]
 gi|167661922|gb|EDS06052.1| hypothetical protein CLOSCI_02797 [Clostridium scindens ATCC 35704]
          Length = 412

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 52/323 (16%), Positives = 107/323 (33%), Gaps = 55/323 (17%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R L++ T  +Y                 ++    + Q+  + +R F S+   QK    ++
Sbjct: 92  RKLAESTQANYRR-------MWNSLVRNELGQMKVVQVRPSHVRLFYSRLSKQKYSHSTI 144

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           K   + I    +      I  ++     + +  +      AL+  Q   L++ V      
Sbjct: 145 KFLHNMILPSFEVAVDDDIIRKNPAKRTLGDYGEPEKKRTALSFDQQKNLLNYV------ 198

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK------GDKIRIVP 201
           +   +      +L ++ G GLR  E + LT +++     T+ +  +      GD      
Sbjct: 199 KNSEVFHIYLPLLQVMIGTGLRCGELIGLTWKDVDLKTRTVYVNHQLIYKNYGDGCDFHV 258

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPL-------------------FRGIRGKPLNPGV 242
            +P     I E             Q  L                   F    G+P+ P  
Sbjct: 259 TMPKTEAGIREIPMSKMVAKAFETQRRLNFQMGIPRDVKIEGLSNFVFMSRSGRPMMPTT 318

Query: 243 FQRYIRQLRRYLGLP---------------LSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
               +R + +                       +AH LRH+  T +     D++ +Q ++
Sbjct: 319 VNFILRDIVKAYNEEENERAKRERRKPEELPHISAHILRHTACTRMAETDLDMKVVQYVM 378

Query: 288 GHFRLSTTQ-IYTNVNSKNGGDW 309
           GH  +S T  +Y ++  ++  + 
Sbjct: 379 GHANISVTMEVYNHITDRSRIEK 401


>gi|107026246|ref|YP_623757.1| phage integrase [Burkholderia cenocepacia AU 1054]
 gi|116692567|ref|YP_838100.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
 gi|105895620|gb|ABF78784.1| phage integrase [Burkholderia cenocepacia AU 1054]
 gi|116650567|gb|ABK11207.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
          Length = 398

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 65/367 (17%), Positives = 123/367 (33%), Gaps = 59/367 (16%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
            G+  P+I +   L   + WL         +  T Q+Y  +  + L++      + ++  
Sbjct: 34  SGSAHPQIAATNDLDAVRAWLARFVD----TPTTFQNYRKEAERLLLWAVIACGKPLS-- 87

Query: 62  TIRQLSYTEIRAFIS-------KRRTQK----------------IGDRSLKRSLSGIKSF 98
           ++        R F+                              +   S +++L  +   
Sbjct: 88  SLTHEDLVVYRQFLLAPAPAELWCANGGRKHPRDDPRWRPFYGPLSAASQRQALVILNVM 147

Query: 99  LKYLKKRKITTESNIL--NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
             +L +      + +     R  + +  + R L +    ++ D +      + +     +
Sbjct: 148 FSWLVQAGYLAGNPLALSRQRQRRPAPRVTRHLGQPLWQSVKDAIAAMPRDDARACFHAD 207

Query: 157 SA--ILYLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSVR 207
            A  +  LLY  GLRI+EA   T             ++  L + GKG + R+VP    + 
Sbjct: 208 RARWLFTLLYLGGLRITEAADTTMGQFFCRRDANGHERWWLDVTGKGGRQRLVPATDEMM 267

Query: 208 KAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLG-------- 255
             +  Y              P    L  G   KPL      R ++Q+ R+          
Sbjct: 268 AELTRYRRTHGLPALPLDGEPTPLVLPFGQARKPLTRAALHRIVKQVFRHAAGRLRANGE 327

Query: 256 -------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                  +    +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +      
Sbjct: 328 TGEQAARVLEQASAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHADDDWRHR 387

Query: 309 WMMEIYD 315
              E + 
Sbjct: 388 ETEEKHR 394


>gi|222085948|ref|YP_002544480.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium
           radiobacter K84]
 gi|221723396|gb|ACM26552.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium
           radiobacter K84]
          Length = 431

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 56/315 (17%), Positives = 109/315 (34%), Gaps = 48/315 (15%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLI-FLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           + WL+   + +     T   Y+    +++   L       +    + ++    IR     
Sbjct: 109 ETWLEEHVLIKRK-PKTYNEYKLAVERYIKPVLGSLKFALVEPSDVLRMQAKIIRG---- 163

Query: 78  RRTQKIGDRSL-KRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQA 134
           +  +  G R++  R+L+ + +   + +  KI     + + ++   K  N + R L  ++ 
Sbjct: 164 KVNKANGGRTMANRALATLSAIYGWAQDLKIVPLGFNPVTSIERFK-ENQIERFLTSEEI 222

Query: 135 LTL---------------VDNVLLHTSH------ETKWIDARNSAILYLLYGCGLRISEA 173
            +L               VD       H                A + L    G R SE 
Sbjct: 223 GSLATALTEAETIGLPYEVDETKAKAKHANRVENRRTVYGEHAIAAIRLYLFTGCRRSEI 282

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE-----YYDLCPFDLNLNIQLP 228
           L LT  ++  ++  L +       + V L P  +  +        Y +   D     + P
Sbjct: 283 LRLTWSDVDLERGILFLPDSKTGKKPVILSPQAQAILTNLTRVGKYVIAGADAGTKDEAP 342

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
                           R  + + R  GL      H LRH++A+     G  L  I  +LG
Sbjct: 343 -----------RADIDRPWKAVTRRAGLHK-LRLHDLRHTYASIGAGGGQGLPIIGKLLG 390

Query: 289 HFRLSTTQIYTNVNS 303
           H  ++TTQ Y ++++
Sbjct: 391 HKNIATTQRYAHLDT 405


>gi|171057465|ref|YP_001789814.1| integrase family protein [Leptothrix cholodnii SP-6]
 gi|170774910|gb|ACB33049.1| integrase family protein [Leptothrix cholodnii SP-6]
          Length = 333

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 64/275 (23%), Positives = 105/275 (38%), Gaps = 21/275 (7%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102
            R F  F+A   +       +      +++         +    +  R L+ ++ F+++L
Sbjct: 36  VRHFTRFMASEDQRGALTVDVMVRWARQVQP--RYLVDGQANVDTAARRLATLRPFMRWL 93

Query: 103 KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
           ++   T E    +          P   +E +   L+         +     A  + +  L
Sbjct: 94  QQFDPTVEVPDDSSFGPIPRRVAPHIYSEAEIAALIVAARRLGPSDG-LRAATYATLFGL 152

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           +   GLR+SEA++L   +   +   L I Q K  K R+VPL PSV   +  Y  L    +
Sbjct: 153 IASAGLRVSEAINLADSDADLEGRVLTIQQTKFGKSRMVPLHPSVIGPLAAYRALRRQHV 212

Query: 222 NLNIQLPLFRG----IRGKPLNPGVFQRYIRQLRRYLG-LPLSTT----AHTLRHSFATH 272
               Q+  F G     RGKPL      R   QLR  LG +          H LRHSFA  
Sbjct: 213 QPRPQMTFFVGSRGVRRGKPLGDRQVHRMFCQLREQLGWIDRGGHGRPRVHDLRHSFAVR 272

Query: 273 ----LLSNGGDLR----SIQSILGHFRLSTTQIYT 299
                   G +L     ++ + +GH  +S+T  Y 
Sbjct: 273 RMILWHQQGANLDQRMLALSTYMGHINISSTYWYL 307


>gi|332971232|gb|EGK10195.1| phage integrase family site-specific recombinase [Desmospora sp.
           8437]
          Length = 385

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/336 (16%), Positives = 107/336 (31%), Gaps = 49/336 (14%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E     L +    WL++   E   +  T Q YE    Q       +   +I    + +L 
Sbjct: 58  EPSKITLGEYLNRWLKDYA-ELNTAPRTYQGYEYMITQ-------HIIPQIGDIPMDKLK 109

Query: 68  YTEIRAFISKRRTQK-------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
              I+ + S++  +        +  RS+      +   L    K ++   +   ++   K
Sbjct: 110 PMHIQGYYSEKLAKGRKDGSGGLSPRSVLHHHRILHQALDQAVKWQVIPMNPAKSVTPPK 169

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                   L+ +Q   L+        +E           ++     G+R  E   L  ++
Sbjct: 170 PQRKQINTLSREQVHQLLSATKNTPYYEQ----------IFFAINTGMRRGEIFGLRWKD 219

Query: 181 IMDDQSTLRIQ----------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL- 223
           +     T+ ++                 K D  R    +      +L           + 
Sbjct: 220 VDFANRTISVRQTIQRIKNKGLVFRDTTKTDGSRRSIAVSDSVIHMLNRIKKRQAQEKIS 279

Query: 224 -----NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
                     +F    G P+N     R   +L + + LP     H LRH+ AT LL  G 
Sbjct: 280 CGPLYQDHDLIFANSDGTPINIDYLSREFGRLIKRMKLP-HIRFHDLRHTHATLLLQQGE 338

Query: 279 DLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
             + +   LGH  ++ T   Y++V      +   ++
Sbjct: 339 HPKVVSERLGHSTITITMDTYSHVMPNMQKEAAQKL 374


>gi|330992094|ref|ZP_08316043.1| Shufflon-specific DNA recombinase [Gluconacetobacter sp. SXCC-1]
 gi|329761115|gb|EGG77610.1| Shufflon-specific DNA recombinase [Gluconacetobacter sp. SXCC-1]
          Length = 393

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 60/293 (20%), Positives = 107/293 (36%), Gaps = 31/293 (10%)

Query: 27  IERGLSKL----TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           IER +       T   Y+     F+I       +KI  + +  L+++++ AF    R   
Sbjct: 109 IERHVKTHLKSTTQAEYQRAIDLFII-------KKIGSRMVATLTHSDVVAFHHAYRHIP 161

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNLKKSNSLPRALNEKQALTLVDN 140
                  R+L  +           + T++      ++  K+     R L  ++   L   
Sbjct: 162 YQA---NRTLGVLSKMFSLAILWGVRTDNVNPCRGVKRYKEQKRE-RYLTTEEHQRLGKA 217

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +    S   + ++A       LL   G R+ E   L  + +  D+  +R+    +  R V
Sbjct: 218 LDDGRSAMPEAVNA-----FQLLLLTGCRLREIQRLKWEYVFLDEGIIRLPDSKNGARTV 272

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
            L  S    +         D+      P     R    +    ++  R++R+  GL    
Sbjct: 273 QLGESAIGLL--------GDITRVEGNPYVITGRKDGGHLTDLEKPWRRIRKEAGLH-DV 323

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             H LRHSFA+  L  G DL  I  +LGH  L +T  Y ++  +     +  I
Sbjct: 324 RIHDLRHSFASDALELGEDLVMIGKLLGHRDLKSTARYAHLKKEPIQRAVKGI 376


>gi|329954699|ref|ZP_08295759.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
 gi|328527240|gb|EGF54244.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
          Length = 410

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 52/293 (17%), Positives = 110/293 (37%), Gaps = 31/293 (10%)

Query: 32  SKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           +K T   Y+   +    FL   Y  E I ++ +      +   F+  R  +K    ++  
Sbjct: 129 AKGTFNRYQTVCKHIREFLPHTYKREDIPLKELNLTFINDFEYFL--RTVKKCRTNTVWG 186

Query: 91  SLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
            +  +K  +   +       +     + + +  +     L +++  TL+D  + + +HE 
Sbjct: 187 YMIVLKHIISIARNDGRLPFNPFAGYINSPESVDR--GYLTQQEIQTLMDAPMKNKTHEL 244

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKGDKIRIVPLLPS 205
                    +       GL  S+  +LT  N       +   +  + K +    + LL  
Sbjct: 245 V------RDLFLFSVFTGLAYSDVKNLTTDNLQTFFDGNLWIITRRKKTNTESNIRLLDV 298

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHT 264
             + I +Y               L R  R  P+ + G   + ++++ +  G     + H 
Sbjct: 299 PLRIIEKYKG-------------LTRDNRVFPVPSNGSCNKVLKEIGKQCGFKTRLSTHV 345

Query: 265 LRHS-FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            RH+   T LLS+G  + ++  +LGH  + TTQIY  + ++     M  +  +
Sbjct: 346 ARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITNQKISQDMETLSHK 398


>gi|182437104|ref|YP_001824823.1| putative phage integrase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178465620|dbj|BAG20140.1| putative phage integrase [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 396

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/361 (15%), Positives = 120/361 (33%), Gaps = 68/361 (18%)

Query: 11  SFELLKERQNWLQNLE-IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            +EL  E   +L +L  ++R  S  T ++Y      +L + A +          ++    
Sbjct: 36  DYELHAEATAFLASLRRVDR--SINTERTYAGRVALYLTYCAVHG------LDWKKPGLP 87

Query: 70  EIRAFISKRRTQKI---------GDR-----SLKRSLSGIKSFLKYLKKRKITTESNILN 115
            +  F+     + +           R     +  + ++ +  FL +   +K   +  +  
Sbjct: 88  WLARFLHWLVDEPLPSRAKNKPASPRFRTKKTANQIMTTVCGFLTFCGLQKWVDQETVNQ 147

Query: 116 MRNLKKSNSLPRALNEKQ--------------ALTLVDNVLLHTSHETKWID----ARNS 157
           +   K  + LP   +  +               + +     L+     K I     AR+ 
Sbjct: 148 LSEQKYLSYLPPGYDPGEDGQFRTVRAKAIKFEVAVEGYAWLNPEQFAKVIGLTRRARDR 207

Query: 158 AILYLLYGCGLRISEALSLTPQNIMD-----------DQSTLRIQG----------KGDK 196
            ++ LL G G+RI EAL L  +++                 + ++           K   
Sbjct: 208 FLVALLGGTGIRIGEALGLRREDMHLLSNSSALGCQISGPHVHVRRRQENSNGALAKARM 267

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR----YIRQLRR 252
            R +P+   +     +Y               +F  +   PL   +          +L +
Sbjct: 268 PRWIPVTAELVTYYADYCFERDQVAEAAYSDMVFVNLFRPPLGRAMTYHNAKDLFDRLAK 327

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G       H LRH+ AT  + N      +Q+++GH   S+ + Y +   ++  + +  
Sbjct: 328 QAG--FEARPHMLRHTAATTWIRNKVPRDVVQNLMGHVSESSMEPYVHATDEDKREAVER 385

Query: 313 I 313
           +
Sbjct: 386 V 386


>gi|20090679|ref|NP_616754.1| integrase [Methanosarcina acetivorans C2A]
 gi|19915728|gb|AAM05234.1| integrase [Methanosarcina acetivorans C2A]
          Length = 388

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 56/331 (16%), Positives = 127/331 (38%), Gaps = 55/331 (16%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           S E     + +L+ ++ E   S+ TL++       F  +           +   +L   +
Sbjct: 18  SMENYVSIKRYLRKIKNE-TTSEATLRNQCVALNIFAKWCD---------KDFSELDEDD 67

Query: 71  IRAFISKRRT---------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           I  +     +         +   + S+      +K FL+ ++K  ++    ++  +N   
Sbjct: 68  IYDYFDYLESYTYERNGKIKHYSETSIYLYKMALKKFLRIIEKEGLSK---LIKCKNP-A 123

Query: 122 SNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +  LP   L+++    L+          +   + R+ A++  LY  G R  E  S+  ++
Sbjct: 124 TKKLPEDILSKEDIEKLL----------SAARNPRDKALIATLYESGARKGELFSVRLKH 173

Query: 181 IMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
           I+ D++   +   +GK    R+  +       + ++ +        N    LF   R   
Sbjct: 174 IVFDENGCIVTLPEGKTGARRVRLVF--AASYLRQWIE--CHPTKDNRDSYLFVSSRDDH 229

Query: 238 --LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI---LGH-FR 291
             ++    +  + ++ +  G+      H  RH+ ATHL  +     + Q +   LG    
Sbjct: 230 PLISTTALKEGLDRISKRAGVKKRVNPHAFRHARATHLAGH----LTEQQMKIYLGWTEN 285

Query: 292 LSTTQIYTNVNSKNGGDWMME----IYDQTH 318
            S   +Y +++ K+  D +++    I D+TH
Sbjct: 286 SSMASVYVHLSGKDIDDAILKMNGIIMDETH 316


>gi|262383655|ref|ZP_06076791.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262294553|gb|EEY82485.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 407

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 57/300 (19%), Positives = 111/300 (37%), Gaps = 29/300 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQTIRQLSYTEIRAF 74
           K+ +++ + + I+R     TL SY+   R      AF  +  K +  ++ +L+   I+ +
Sbjct: 114 KDNESFKKRIGIDR-----TLSSYKVRVRARNHLAAFIRKCHKRSDISMLELTPDFIKEY 168

Query: 75  ISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR---NLKKSNSLPRALN 130
                T   + + S+  +   +K+ +       +T  +     R   N+K+       L 
Sbjct: 169 EIYLSTDAGLHNGSVWSNCMWLKTIVAKAHYNGLTPRNPFAQYRVNQNIKERE----YLT 224

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           E +   ++      T   T    A    +        L   +   LT  +I++      I
Sbjct: 225 EDEIKAVM------THEFTDRKLAYIRDLFVFASFTALSFVDIKELTTDDIVEMNGEKWI 278

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
             K    R    +P   K +     +            +F       LN     + ++Q+
Sbjct: 279 LSK----RHKTKVPFQVKLLDIPLQIIRRYERFQENGLVFPN-----LNYWSICKPLKQM 329

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  G+    + H  RH FAT  LS G  + S+  ILGH  ++TTQ Y  + ++     +
Sbjct: 330 IKECGITKEISFHCARHGFATLALSKGMPIESVSRILGHTNITTTQKYAKITTEKIDKDL 389


>gi|323344149|ref|ZP_08084375.1| integrase [Prevotella oralis ATCC 33269]
 gi|323094878|gb|EFZ37453.1| integrase [Prevotella oralis ATCC 33269]
          Length = 407

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 58/298 (19%), Positives = 105/298 (35%), Gaps = 28/298 (9%)

Query: 35  TLQSYEC-DT--RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKR 90
           T  +Y   D   R F  FL        T   I +L+   I  F    +T       +  +
Sbjct: 129 TKANYRKFDICKRHFTKFLEVKYAR--TDLNIIELTPIVIHDFDVYLKTVVGQSFNTAIK 186

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           +L   K+ + + +K  +       N+   K        L +++   ++          T 
Sbjct: 187 TLKTFKTIVIFGRKTGVFNHDPFFNIH-FKTKRVDRGFLTDEEIDAIMHKEF------TT 239

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRIQGKGDKIRIVPLLPSVR 207
                   I       GL   +  +LTP N   +   Q  +  + K D    + LL   +
Sbjct: 240 QRLVNVRVIFLFSCFTGLAYVDVANLTPANIITMDGKQWIVTTRQKTDTPSHILLLDIPK 299

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             I +Y      D  + I            L+      Y++++    G+  + T H  RH
Sbjct: 300 MIIKKYEGKTKNDRLIPI------------LSNQRMNSYLKEIADVCGINKNLTFHMARH 347

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           +  T  LS G  + SI  ++GH  +++TQIY  V      + M  +  +     T+++
Sbjct: 348 TSGTMSLSAGIPIESIAKMIGHASIASTQIYAQVTDNKISEDMDRLIRRLQKEETREE 405


>gi|225026009|ref|ZP_03715201.1| hypothetical protein EUBHAL_00247 [Eubacterium hallii DSM 3353]
 gi|224956659|gb|EEG37868.1| hypothetical protein EUBHAL_00247 [Eubacterium hallii DSM 3353]
          Length = 308

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 62/297 (20%), Positives = 106/297 (35%), Gaps = 54/297 (18%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q W+Q L  E  +S+LT  +Y+     +    A   E + T+    QL    + A     
Sbjct: 39  QKWIQKLAPELKVSELTRTAYQQILNDY----AKEHERQTTLDFHHQLKGAILDA----- 89

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSN-SLPRALNEKQALT 136
                                       +         +   K       + LN+ +  T
Sbjct: 90  ------------------------LDEGMIERDPTRKAIIKGKTPRAKKIKYLNQFELHT 125

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+ ++ L       W        + L+   G+R SEAL++TP +    +  L I    D 
Sbjct: 126 LIASLDLSEEPNWDW-------FILLVAKTGMRFSEALAITPSDFDFARQALSISKTWDY 178

Query: 197 IRIVPLLP-----SVRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
                 LP     SVRK  +++  +  F      L    P+F G     +        + 
Sbjct: 179 KGEGGFLPTKNRSSVRKIQIDWQIVVKFSELIKGLPEDEPIFIGKS--KIYNSTVNDVLT 236

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           +  +  G+    + H LRH+ A+ LL  G  + S+   LGH  ++TTQ  Y ++  +
Sbjct: 237 RHCKQCGIS-DISIHGLRHTHASLLLFAGVSIASVARRLGHASMTTTQKTYLHIIQE 292


>gi|134288055|ref|YP_001110219.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134132705|gb|ABO60331.1| phage integrase family protein [Burkholderia vietnamiensis G4]
          Length = 411

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 61/336 (18%), Positives = 113/336 (33%), Gaps = 73/336 (21%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR------------ 79
           S  T +SY  +  +F  +L+ Y       + +  +   +I  +I+  +            
Sbjct: 65  SPHTHRSYRKEIERFYNWLSVYLR-----KDLGSVVRDDIDRYIAFVKNPPSDWVRQKSG 119

Query: 80  ------------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLK---KSN 123
                       T  + D S K+++  + S   +L   +    +   +  R  K   +  
Sbjct: 120 RPRRDDDGFQPFTGPLSDASCKQAIVIVGSLFSWLVDARYLAGNPFSIRRRKAKLSAQEK 179

Query: 124 SLPRALNEKQ---------ALTLVDNVLLHTSHETKWIDARNSA-----ILYLLYGCGLR 169
                  + +            L+   L   + E +   A+  A     ++  L   GLR
Sbjct: 180 REEHKTGQAEQSDRYLPAPTARLLLQFLERQADEAEGRRAKRHAERKLFVVRFLLNTGLR 239

Query: 170 ISEALSLTPQNIMDDQ--------STLRIQGKGDKIRIVPLLPSVRKAILEYYDL----- 216
             E  S    +I             T+++ GKG  +R + L  + R A+  Y        
Sbjct: 240 RDELASARMSDIYRRYDNASAQYYWTMQVIGKGGVVRTIALNETARNALQRYRSFFKAST 299

Query: 217 CPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYI------------RQLRRYLGLPLSTTAH 263
                +  I LPL+      +PL+     + +                    L  + + H
Sbjct: 300 HHTQNDCPIYLPLWGEQPNARPLDGQSIYKDVAKALEDAADALAASYLDESLLLKAASPH 359

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
             RH+FA+ L   G  + +IQ+ LGH  + TT IY 
Sbjct: 360 WFRHTFASMLDGLGVSITTIQAQLGHASIETTSIYI 395


>gi|268610904|ref|ZP_06144631.1| integrase family protein [Ruminococcus flavefaciens FD-1]
          Length = 391

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 61/345 (17%), Positives = 122/345 (35%), Gaps = 59/345 (17%)

Query: 8   EIVSFELLKERQNWLQ-NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           E     L +    WL    +IE     + L +Y      +  ++  + +  I    +  L
Sbjct: 63  EPCKVTLYEWLCTWLDQYCKIE-----VKLTTYVN----YDTYVHRHIKNTIGGYKLCDL 113

Query: 67  SYTEIRAFISKRRTQK-------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           + + +++F +++           +  +++K     +   L       +  ++    +   
Sbjct: 114 NTSIMQSFFNEKAENGKLHSSGGLSPKTIKNMHDMMHRALDKAVHLDMIIKNPTDFVTLP 173

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K+  S  R L   +   L + +                  + L    G+R  E   L  +
Sbjct: 174 KRRKSEMRFLTIDEQKKLQEALKGDRLEMP----------VLLALYTGMRQGEIFGLKWK 223

Query: 180 NIM---DDQSTLRI------------------------QGKGDKIRIVPLLPSVRKAILE 212
            +     D++ LR+                              IR +PL+P + + + E
Sbjct: 224 YVHIESTDRAWLRVVQAVNRFSNRTDDGKRKTFLSLSEPKTPHSIRTIPLMPYIAERLTE 283

Query: 213 YYD---LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           Y         D  L +   +F    G  ++P  FQR  + L +  GL      H LRH+F
Sbjct: 284 YKCEQEQHFKDNGLPMSEMVFTTKNGNLVDPRNFQRDFKLLLKRNGLH-EINVHGLRHTF 342

Query: 270 ATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDWMMEI 313
           AT  L +G +++++  ILGH  ++ T   Y +V      + M  +
Sbjct: 343 ATRALESGMNVKTLSKILGHSSVAFTLDTYAHVTEDLKFEEMSAL 387


>gi|224538580|ref|ZP_03679119.1| hypothetical protein BACCELL_03474 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519804|gb|EEF88909.1| hypothetical protein BACCELL_03474 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 397

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 108/291 (37%), Gaps = 22/291 (7%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GL + T +++         F            T   L++  + +F    +++     ++ 
Sbjct: 122 GLKESTKRNHLSTLALLQDFKKNV--------TFSDLTFEFVSSFEYFLQSKGYHTNTIA 173

Query: 90  RSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           + +  +K  +     ++    +        +K   +    L  ++   +    L  T   
Sbjct: 174 KHMKHLKRHINVAINKEYMDIQKYAFRKYKIKTVENGHTHLAPEELEKM--ETLQLTGRY 231

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRIVPLLPSVR 207
            K+    + A L+  Y  G+R S+ +++ P+NI+   Q T  I         V L   + 
Sbjct: 232 IKYQKTLD-AFLFCCYA-GMRYSDFVNMKPENIVEMHQETWLIYKSIKTGTEVRLPLYLL 289

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                   L  +  NL     L               + +  + R  GL    + HT RH
Sbjct: 290 FNGKGIQILNKYQANLQDFFHLRDN--------SNVNKELIIITRLAGLSKKVSFHTARH 341

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           + AT L+ NG ++ ++Q +LGH  + TTQIYTNV        + + +   H
Sbjct: 342 TNATLLIYNGVNITTVQKLLGHKSVKTTQIYTNVMDMTIISDLEKNHSLAH 392


>gi|224024735|ref|ZP_03643101.1| hypothetical protein BACCOPRO_01463 [Bacteroides coprophilus DSM
           18228]
 gi|256841208|ref|ZP_05546715.1| integrase [Parabacteroides sp. D13]
 gi|224017957|gb|EEF75969.1| hypothetical protein BACCOPRO_01463 [Bacteroides coprophilus DSM
           18228]
 gi|256737051|gb|EEU50378.1| integrase [Parabacteroides sp. D13]
          Length = 406

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 88/256 (34%), Gaps = 19/256 (7%)

Query: 57  KITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           K T  ++ +L+   I+ F +     + + + ++  +   +K  +       +   +    
Sbjct: 152 KRTDMSMLELTPDFIKEFAAYLTAERGLKNATIWLNCMWLKGVVMRAHYNGLIPRNPFAQ 211

Query: 116 MR-NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
              +          L E +   ++     H          R+  I        L   +  
Sbjct: 212 FHISPNVKER--EYLTEDEIKRIM----AHEFDNPTLALVRDLFIFACF--TALSFVDMK 263

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
            LT   I++      I  K    R    +P   K +     +      L+    +F    
Sbjct: 264 ELTTDEIVEVNGEKWILSK----RHKTNVPFQVKLLDIPLQIIERYKYLSEDKLVF---- 315

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              +N     + ++++    G+    + H  RH+F T  LS G  + S+  +LGH  + T
Sbjct: 316 -GKINYWTMCKQLKKVMAECGIEKHISYHCARHTFGTLALSKGMPIESVSRVLGHTNIVT 374

Query: 295 TQIYTNVNSKNGGDWM 310
           TQIY  + ++   + +
Sbjct: 375 TQIYAKITTQKLDNDL 390


>gi|331662209|ref|ZP_08363132.1| integrase for prophage [Escherichia coli TA143]
 gi|331060631|gb|EGI32595.1| integrase for prophage [Escherichia coli TA143]
          Length = 351

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 91/239 (38%), Gaps = 29/239 (12%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILNMRNLKKSNSLPRALNEK 132
           + S++  +     ++    S + S  + L +    T  + +  MR    +      L  +
Sbjct: 119 YFSEKWKKGASPVTVNLEQSHLSSVFRELSRLGEWTLPNPLEKMRKFTIAEKEMAWLTHE 178

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q + L+ +         K  +   + ++ +    G R  EA++LT   +   + T  ++ 
Sbjct: 179 QIIELLSDC--------KRQNPILALVVKICLSTGARWREAINLTRSQVTKYRITF-VRT 229

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+   + + I+       F                       FQ      + 
Sbjct: 230 KGKKNRSIPISKELYEEIMALDGFNFF-------------------TDCYFQFLSVMEKT 270

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++   +    + 
Sbjct: 271 SIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHLETALR 329


>gi|223369846|gb|ACM88792.1| integrase [uncultured bacterium]
          Length = 163

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/111 (35%), Positives = 55/111 (49%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +G G       L     +A  E+     F        PL R +R   L+    QR + + 
Sbjct: 52  RGGGRVEIPNALARKYPRAGSEWRWQYVFPATRTYIDPLSREMRRHHLHVSAVQRAVTEA 111

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            R  G+    T HT RHSFATHL+ +G D+R++Q +LGH  + TT IYT+V
Sbjct: 112 VRGSGITKRATCHTFRHSFATHLIEDGYDIRTVQELLGHADVRTTMIYTHV 162


>gi|150016222|ref|YP_001308476.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149902687|gb|ABR33520.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 325

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 59/314 (18%), Positives = 121/314 (38%), Gaps = 31/314 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRAFISKR 78
            ++   +   GL + TL S +        F  +   + ++    I  ++  +I  +I+  
Sbjct: 28  EYMDYCKSI-GLRQATLVSKQR-------FYTYELLKHVSADDEINIITQKKIEGWINSM 79

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTL 137
                   + +  +  +K+FL Y   R+   E  +           +P   L +K+  T 
Sbjct: 80  IDYGYKGNTYQTFVIKLKAFLTYCFTREYLKEYEV----------KIPNVILEKKEIYTE 129

Query: 138 VDNVLLHTSHETKWIDARNS---AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
            +   L    +       +    A +  L G G R +  L++  ++I   +  +      
Sbjct: 130 DELKKLLKKPDLDTCLVGDYRSFATVSFLVGAGCRSTTLLNVRVKDIDFKKEMILFAHMK 189

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K ++   L    K IL+ Y       NL  +  LF  + G  ++       +    ++ 
Sbjct: 190 TKRQVNVPLSKSLKLILKDYIETM---NLKNEDILFPKLDGTKMSYDTLHENLVNYFKHC 246

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            + +    +T R++FAT  + NGGD+  ++ +LGH  + TT+ Y N+   +  D ++   
Sbjct: 247 KVKMRGV-NTFRNTFATMFVRNGGDIYRLKLLLGHSNIKTTERYVNLLPIDFKDDLL--- 302

Query: 315 DQTHPSITQKDKKN 328
            Q +P       KN
Sbjct: 303 -QYNPLDILNKNKN 315


>gi|332652986|ref|ZP_08418731.1| putative prophage LambdaCh01, site-specific recombinase, phage
           integrase family [Ruminococcaceae bacterium D16]
 gi|332518132|gb|EGJ47735.1| putative prophage LambdaCh01, site-specific recombinase, phage
           integrase family [Ruminococcaceae bacterium D16]
          Length = 409

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/304 (18%), Positives = 110/304 (36%), Gaps = 40/304 (13%)

Query: 33  KLTLQSYECDTRQFLI-FLAFYTEEKITIQTIRQL-----SYTEIRAFISKRRTQKIGDR 86
             T ++YE      ++  +     +++T   I+++     +   ++ F  ++    +   
Sbjct: 90  PNTAKTYENMIENHIVPAIGGVKLKRLTAIQIQKMYNDSKTSGRVQRF-ERKTDTALSGS 148

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           +++R    + S LK   K +I   +   N R   K       +  ++    +     +  
Sbjct: 149 TVRRIHMVLSSALKQAVKERIIPYNPCDNCRIPPKEKKEMTIIPPEKLGVYLSEAEKYGV 208

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---------------Q 191
                       + YL    GLR  E L+L   ++      L +                
Sbjct: 209 LP----------MFYLELSSGLRRGELLALRWDDLNVKDRILSVSKQVTRIDGELVVTEP 258

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQL 250
              + +R V L       +++ ++  P          LF   R     +P    R  R+L
Sbjct: 259 KTKNSVRKVALSQQAVALLVQEHEQHP------DSPILFPSPRTGGYWSPDAVSRINRKL 312

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDW 309
               G+      H LRH+FAT  LS+G D++++ S+LGH+    T   YT++ +      
Sbjct: 313 LAKAGIEERVRFHDLRHTFATMALSSGVDVKTLSSMLGHYSAGFTLDTYTHITNDMQRGA 372

Query: 310 MMEI 313
             +I
Sbjct: 373 AEKI 376


>gi|289810498|ref|ZP_06541127.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 275

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 93/239 (38%), Gaps = 29/239 (12%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + S++  +     ++    S + S F +  +  + +  + + NMR    +      L  +
Sbjct: 44  YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 103

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q + L+         + K  D   + ++ +    G R  EA++LT   +   + T  ++ 
Sbjct: 104 QIVELL--------ADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITF-VRT 154

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+   + + I+       F                       FQ      + 
Sbjct: 155 KGKKNRSIPISKELYEEIMALDGFNFF-------------------TDCYFQFLSVMEKT 195

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++   +    + 
Sbjct: 196 SIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHLETALR 254


>gi|16801672|ref|NP_471940.1| hypothetical protein lin2610 [Listeria innocua Clip11262]
 gi|16415147|emb|CAC97837.1| lin2610 [Listeria innocua Clip11262]
          Length = 384

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 115/292 (39%), Gaps = 37/292 (12%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T+  Y+    QF+ +     +EKI + +I  + Y +    ++          ++   
Sbjct: 76  SQSTINLYDLAYNQFVNYF----DEKIKLNSIDAVQYQQFINHLA----LDYAVATIDTR 127

Query: 92  LSGIKSFLKYLKKRKITTESNIL--NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
              I++            ++  L  ++     + +  + L   +   L++        E 
Sbjct: 128 HRKIRAIFNKAVHLGYMKKNPALGAHISGHDIAKTKAQYLETDKVHLLLE--------EL 179

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-------------KGDK 196
             + + + A+++L    G+R  E ++LT ++I   + ++ +               K  K
Sbjct: 180 AKLHSISRAVIFLAVQTGMRFEEIIALTKKDINFTKRSISVNKAWDYKYTNTFTDTKTKK 239

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
            R++ +  S  + +  Y       +      N  + LF     KP++     + ++++  
Sbjct: 240 SRVIYIDNSTVQYLQSYLAWHADYMKEHAIENPVMLLFITYHNKPVDNASCNKALKKICT 299

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
            +    + T H LRH+     +  G D+  +   LGH  ++TT + Y++++S
Sbjct: 300 TIN-SETVTLHKLRHTHTGLCVEAGMDIIYVADRLGHDDINTTLKYYSHLSS 350


>gi|331002078|ref|ZP_08325597.1| hypothetical protein HMPREF0491_00459 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411172|gb|EGG90588.1| hypothetical protein HMPREF0491_00459 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 309

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 104/281 (37%), Gaps = 30/281 (10%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           TL  Y                  + +  I ++ Y +I    +K   ++    +       
Sbjct: 31  TLSKYRMSL-----IWVEKLVPNLRLCDITRVEYQQIINDYAKEHERQ----TTMDFHHQ 81

Query: 95  IKSFLKYLKKRKITTESNILN--MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           +K  +       +  +       ++    S    + LN+ +  +L+ ++ L       W 
Sbjct: 82  LKGAILDAVDEGLVPKDPTRKVIIKGRIPSKKKIKYLNQFELHSLLKSLTLGDEVSWDW- 140

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVR 207
                  + LL   G+R SE L++TP +      T+ +    +        P     SVR
Sbjct: 141 ------FILLLAKTGMRFSEGLAITPNDFDFAHQTVSVNKTWNYKEGGGFSPTKNKSSVR 194

Query: 208 KAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           K  +++  +  F     +L    P+F   +   +        + +  + L +P+  + H 
Sbjct: 195 KVQIDWQVVMQFATLVKDLPSDKPIFV--KDGKVYNSTVNDILVRYCKKLNIPI-ISVHG 251

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           LRH+ A+ LL  G  + S+   LGH  ++TTQ  Y +V  +
Sbjct: 252 LRHTHASILLYAGVSIASVARRLGHASMTTTQKTYLHVIQE 292


>gi|300764390|ref|ZP_07074384.1| integrase [Listeria monocytogenes FSL N1-017]
 gi|300515042|gb|EFK42095.1| integrase [Listeria monocytogenes FSL N1-017]
          Length = 384

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 110/292 (37%), Gaps = 37/292 (12%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T+  Y+    QF+ +     +       +  +   + + FI+          ++   
Sbjct: 76  SQSTINLYDLAYNQFVDYFGEKRK-------LNSIDAVQYQQFINHLSVD-YAISTVDTR 127

Query: 92  LSGIKSFLKYLKKRKITTESNIL--NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
              I++            ++  +  ++     + +  + +   +   L++        E 
Sbjct: 128 HRKIRAIFNKAVHLGYMKKNPAIGAHISGHDVAKTKAQFMETDKVHLLLE--------EL 179

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-------------KGDK 196
               + + A+++L    G+R  E ++LT ++I   + ++ +               K  K
Sbjct: 180 ANFHSISRAVIFLAVQTGMRFEEIIALTKKDINFAKRSITVNKAWDYKYTNTFIDTKTKK 239

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLN----LNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
            R++ +  S  + +  Y       +      N Q+ LF     KP++     + ++++  
Sbjct: 240 SRVIYIDNSTVQYLQSYLTWHSAYIKEYSIKNPQMLLFITYHNKPVDNASCNKALKKICS 299

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
            +      T H LRH+     +  G D+  +   LGH  ++TT + Y++++S
Sbjct: 300 TIN-SEPVTLHKLRHTHTGLCVEAGMDIIYVADRLGHDDINTTLKYYSHLSS 350


>gi|169827497|ref|YP_001697655.1| integrase/recombinase [Lysinibacillus sphaericus C3-41]
 gi|168991985|gb|ACA39525.1| integrase/recombinase [Lysinibacillus sphaericus C3-41]
          Length = 345

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 122/293 (41%), Gaps = 27/293 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GL   T+ SY  + ++F+        E   ++ + +++  +I  ++S      + D SL+
Sbjct: 68  GLRPRTIDSYNYNFKRFV--------EVTEVEYLHEINNEKIYQYLSSF--DNVKDTSLQ 117

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             L  IK+ L               N++ +K + S+  A  EK+       VLL    ++
Sbjct: 118 GRLKQIKAVLSKCHDNGWYNSKFWKNIK-IKVNTSVKEAATEKEL-----TVLLSLLDKS 171

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSV 206
            +   R+S  + LLY  G+RI    +L  QNI  D   L++QG   K  +  I+PL   +
Sbjct: 172 TYSGLRDSIAILLLYKTGIRIKTLGALREQNIDFDNMLLKLQGEIMKAHRPLILPLDDEM 231

Query: 207 RKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGV-----FQRYIRQLRRYLGLPLS 259
              + E   +  +    + +    +F    G P++  V       + +    +   L  +
Sbjct: 232 CTLLRELISINDYVRKEHREKNDYIFLSNIGVPISNTVSPSNLIAKNLWVYSKKWNL-KN 290

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              H++R  +A +L+  G D+  +   L H  LSTT  Y  ++       + +
Sbjct: 291 VNPHSIRRLYAQNLVKRGADINLVSHALAHSDLSTTSKYLGLDIGTVAKNLRD 343


>gi|153807728|ref|ZP_01960396.1| hypothetical protein BACCAC_02010 [Bacteroides caccae ATCC 43185]
 gi|160886150|ref|ZP_02067153.1| hypothetical protein BACOVA_04157 [Bacteroides ovatus ATCC 8483]
 gi|160889087|ref|ZP_02070090.1| hypothetical protein BACUNI_01508 [Bacteroides uniformis ATCC 8492]
 gi|149129337|gb|EDM20551.1| hypothetical protein BACCAC_02010 [Bacteroides caccae ATCC 43185]
 gi|156108035|gb|EDO09780.1| hypothetical protein BACOVA_04157 [Bacteroides ovatus ATCC 8483]
 gi|156861554|gb|EDO54985.1| hypothetical protein BACUNI_01508 [Bacteroides uniformis ATCC 8492]
          Length = 354

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 62/310 (20%), Positives = 120/310 (38%), Gaps = 38/310 (12%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           F+  K + ++L++    + L K   +          +    +   K T + I      + 
Sbjct: 69  FDKYKLKADFLEHYR--KQLRKHDQKW-----EFVYLHFNNFVHGKCTFEEIDIDLCNKF 121

Query: 72  RAFISK----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
           R ++      RR  +I   S     S  + FLK L +  +   +    +  ++  + +  
Sbjct: 122 REYLLTAKKLRRKGRITRNSASGYWSTFRGFLKILYRNGMIKTNVNDFLDKIETEDVVKE 181

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD---- 183
            L+  +   L +          K    + +++   +    LRIS+ L+L  ++I+D    
Sbjct: 182 YLSVDELYKLAET-------PCKKPILKIASLFSCM--TSLRISDILALCWEDIVDYSAG 232

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
            +    I  K     I+P+       I           N   +  +F+G     L     
Sbjct: 233 GKCVHIITQKNKAEDIIPISEEALGLI---------GYNSEKKGLVFKG-----LMRSWT 278

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           Q  +++  R  G+  + T H+ R +FAT   + G D+R+IQSI+ H  ++TTQ Y  V  
Sbjct: 279 QIPMKEWIRSAGITKNITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVD 338

Query: 304 KNGGDWMMEI 313
            N  +   +I
Sbjct: 339 ANKREASKKI 348


>gi|89147568|gb|ABD62643.1| integrase [uncultured bacterium]
 gi|89147616|gb|ABD62667.1| integrase [uncultured bacterium]
          Length = 163

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 70/162 (43%), Gaps = 37/162 (22%)

Query: 177 TPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAIL------------------------ 211
             +++  ++  + ++G KGDK R+V +   ++  +                         
Sbjct: 1   RVKDVDFERGVITVRGGKGDKDRVVMMPDKLKTDLWTHLARVKLLHQKDAANGYGAVYVP 60

Query: 212 ------------EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
                       E+     F        P+ R +R   L+  V Q+ IR   R  GL   
Sbjct: 61  NALDRKYPAAPMEWMWQYVFPAATLSVDPVTRQVRRHHLHDSVIQKAIRDASRLSGLNKL 120

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              HTLRHSFATHLL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 121 IGPHTLRHSFATHLLESGSDIRTVQELLGHKHVQTTMIYTHV 162


>gi|53714293|ref|YP_100285.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|160890419|ref|ZP_02071422.1| hypothetical protein BACUNI_02861 [Bacteroides uniformis ATCC 8492]
 gi|167762413|ref|ZP_02434540.1| hypothetical protein BACSTE_00767 [Bacteroides stercoris ATCC
           43183]
 gi|237714129|ref|ZP_04544610.1| transposase [Bacteroides sp. D1]
 gi|253565736|ref|ZP_04843191.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|262407179|ref|ZP_06083728.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_22]
 gi|293372588|ref|ZP_06618970.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|294646951|ref|ZP_06724570.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294809674|ref|ZP_06768363.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|299148363|ref|ZP_07041425.1| integrase [Bacteroides sp. 3_1_23]
 gi|317479063|ref|ZP_07938205.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|52217158|dbj|BAD49751.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|156860151|gb|EDO53582.1| hypothetical protein BACUNI_02861 [Bacteroides uniformis ATCC 8492]
 gi|167699519|gb|EDS16098.1| hypothetical protein BACSTE_00767 [Bacteroides stercoris ATCC
           43183]
 gi|229445953|gb|EEO51744.1| transposase [Bacteroides sp. D1]
 gi|251946015|gb|EES86422.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|262355882|gb|EEZ04973.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_22]
 gi|291515085|emb|CBK64295.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
 gi|292632397|gb|EFF50993.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292637721|gb|EFF56120.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294443098|gb|EFG11876.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298513124|gb|EFI37011.1| integrase [Bacteroides sp. 3_1_23]
 gi|316904777|gb|EFV26589.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 403

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 59/332 (17%), Positives = 124/332 (37%), Gaps = 38/332 (11%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYEC------DTRQFLIFLAFYTEE 56
            N++PE +      ER+     L + R     +  +Y        + RQF+        +
Sbjct: 97  ANSVPEYLLQAGEVERER----LRV-RSKEINSTSTYRQSKTTQLNLRQFI---ESRGMK 148

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
            I    I +      + F+ K    + G   +   L  +   +     R+I   + I ++
Sbjct: 149 DIAFSDITEEFAESFKVFLKKELGHRNGH--VNHCLCWLNRLIYIAVDREILRANPIEDV 206

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              +K     R ++  +   +++     T      ++      ++     GL  ++  +L
Sbjct: 207 AYERKETPKLRHISRSELKRMME-----TPLPDPMMELARRTFIFSSL-TGLAYADTRAL 260

Query: 177 TPQNI---MDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
            P++I    + +  +RI+  K D    +PL P   + +  Y          +   P+F  
Sbjct: 261 HPRHIGTTSEGRRYIRIRRAKTDVEAFIPLHPIAGQILELYNT-------TDDDRPVFPL 313

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                    V    +  +   LG+  + + H  RHSF T  L+ G  + SI  ++GH  +
Sbjct: 314 PV-----RDVLWYEVHGMGVALGMKENLSYHMARHSFGTLTLTAGIPIESIARMMGHTNI 368

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
            +TQ+Y  V  +     M  + ++  P+  ++
Sbjct: 369 DSTQVYAQVTDRKISSDMNRLMERRKPAAGKE 400


>gi|221198844|ref|ZP_03571889.1| phage integrase family protein [Burkholderia multivorans CGD2M]
 gi|221205104|ref|ZP_03578120.1| phage integrase family protein [Burkholderia multivorans CGD2]
 gi|221174895|gb|EEE07326.1| phage integrase family protein [Burkholderia multivorans CGD2]
 gi|221181295|gb|EEE13697.1| phage integrase family protein [Burkholderia multivorans CGD2M]
          Length = 613

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 62/360 (17%), Positives = 117/360 (32%), Gaps = 82/360 (22%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-------------- 80
           T ++Y  +  + L++     E  + + +++       +AF++                  
Sbjct: 253 TQRAYRRELERLLLWA--VVERGVALSSMQVEDCEAYKAFLAAPSAAFSGPPASRASGRW 310

Query: 81  -----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK---------KSNSLP 126
                  +   S   ++  I++  ++L K +    +    + + K          S +LP
Sbjct: 311 RPFGPGGLSLESQLYAVRAIRAAFEWLVKVRYLAGNPWAAVVDPKPVKHAKRMQVSRALP 370

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE-------ALSLTPQ 179
             L  +    L D       H ++W  A   A+L L+   GLRI+E       AL L P 
Sbjct: 371 VDLWARTRAALADWSEGSGPHASRWRAA--RALLLLMGDAGLRIAEATAASRDALELHPA 428

Query: 180 N-IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIR 234
           +  +     LR+ GK  K R VPL  +   A+  ++     D +                
Sbjct: 429 DGEIPATWELRVIGKRRKERFVPLSGTCIDALRAHWRDRGMDFDAADGTGRSDVALIAPL 488

Query: 235 GKPLNPGVFQRY-------------------------IRQLRRYLGLPL----------- 258
             P  P   +++                         + Q      L             
Sbjct: 489 VIPRTPRAREKFAPNDDASNGAAQKTATGYSVRGARGLAQWAVEQLLEKMPDLTEPERRR 548

Query: 259 --STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H  RH+F T  ++    L  +Q +LGH  L TT +Y     K     + + + +
Sbjct: 549 LAGVSPHAFRHTFGTQSVATDVPLDVVQQLLGHASLQTTSVYVTAEEKRRRAEIAKYHAR 608


>gi|315286853|gb|EFU46270.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 110-3]
 gi|323955383|gb|EGB51153.1| phage integrase [Escherichia coli H263]
          Length = 200

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 65/181 (35%), Gaps = 8/181 (4%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K  N     L   +  +L+       +  T    ARN  +  L +  G R SE   L   
Sbjct: 4   KADNKKRNFLTHSEIESLL------KAANTGPHAARNYCLTLLCFIHGFRASEICRLRIS 57

Query: 180 NIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           +I      + I   K       PLL    +A+  +  +     +   +  +F   +G PL
Sbjct: 58  DIDLKAKCIYIHRLKKGFSTTHPLLNKEVQALKNWLSIRTSYPHAESE-WVFLSRKGNPL 116

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +   F   I       GL L    H L HS    L + G D R IQ  LGH  +  T  Y
Sbjct: 117 SRQQFYHIISTSGGNAGLSLEIHPHMLHHSCGFALANMGIDTRLIQDYLGHRNIRHTVWY 176

Query: 299 T 299
           T
Sbjct: 177 T 177


>gi|215407984|emb|CAS02319.1| integron integrase [uncultured bacterium]
 gi|215407986|emb|CAS02320.1| integron integrase [uncultured bacterium]
 gi|215407988|emb|CAS02321.1| integron integrase [uncultured bacterium]
 gi|215407990|emb|CAS02322.1| integron integrase [uncultured bacterium]
 gi|215408004|emb|CAS02329.1| integron integrase [uncultured bacterium]
 gi|215408014|emb|CAS02334.1| integron integrase [uncultured bacterium]
 gi|215408018|emb|CAS02336.1| integron integrase [uncultured bacterium]
 gi|215408024|emb|CAS02339.1| integron integrase [uncultured bacterium]
 gi|215408028|emb|CAS02341.1| integron integrase [uncultured bacterium]
 gi|215408034|emb|CAS02344.1| integron integrase [uncultured bacterium]
          Length = 157

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 49/93 (52%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 65  RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 124

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           SFAT LL +G D+R++Q +LGH  +STT IYT+
Sbjct: 125 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 157


>gi|319939540|ref|ZP_08013900.1| integrase [Streptococcus anginosus 1_2_62CV]
 gi|319811526|gb|EFW07821.1| integrase [Streptococcus anginosus 1_2_62CV]
          Length = 381

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 52/310 (16%), Positives = 117/310 (37%), Gaps = 38/310 (12%)

Query: 36  LQSYECDT-----RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR---S 87
           L SY+        R     L  +         + +++   I+ FI+    + +      S
Sbjct: 78  LSSYQLTVKPQTFRATQRMLYNHLIPAFGTMKLNKITVYYIQDFINDLSKELVHYSVVHS 137

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLK---KSNSLPRALNEKQALTLVDNVLLH 144
           + R +      L+Y    ++   +   ++   K   + N + + +  +    L+D +   
Sbjct: 138 INRRV------LQYGVSLQLLPFNPARDVILPKVLKRENKVIKFIAPENIKALMDYM--E 189

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK-------- 196
           +    K+    +  +  +L   G R  E ++L   +I   + T+ I    ++        
Sbjct: 190 SLSNQKYGYYLDYVLYSVLLATGCRFGEVVALEWSDIDLKEKTISITKNYNRLLKLIGTP 249

Query: 197 -----IRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIR 248
                +R++ +       +  Y +      L ++ Q P  +F     +  N    Q  + 
Sbjct: 250 KSKAGVRVISIDKKTVNMLRLYKNRQRQLFLEVDSQAPAVVFATPTKEYQNMATRQESLD 309

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGG 307
           +  + +  P   T H  RH+ A+ LL+ G   + +Q  LGH  L+TT  IY++++     
Sbjct: 310 RRLKEINCPR-FTFHAFRHTHASLLLNAGISYKELQYRLGHATLATTMDIYSHLSKDKEK 368

Query: 308 DWMMEIYDQT 317
           + +   Y++ 
Sbjct: 369 EAV-SYYEKA 377


>gi|296272532|ref|YP_003655163.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
 gi|296096706|gb|ADG92656.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
          Length = 356

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/295 (16%), Positives = 111/295 (37%), Gaps = 41/295 (13%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           VSFE+ K  + +L          K  L  Y+ + + +L             + + ++  +
Sbjct: 72  VSFEIHKNHRRFLTQ--------KNHLYVYKHNIKPYL-----------GNKKLDEIKPS 112

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK-KSNSLPRA 128
           +I  + +K   + +  +SL  + + +          +I   + +  ++          + 
Sbjct: 113 QIATWQNKLL-ETLSTKSLSMARAVLNVIFNDAIADEIILRNPLSVIKKPHNVPTREIKP 171

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
            ++ +   L+DN           ++ +      + +  G+R  E L+L   +I  +   +
Sbjct: 172 FSQDEIFKLLDN-----------VNEKVRCYFAIGFFTGMRTGEILALKWSDIDYENGII 220

Query: 189 RIQGKGDK------IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-- 240
           +++    +           +       IL  Y        +     LF     KP N   
Sbjct: 221 KVRRSKRQGIESEPKTKASIRDVDILDILIPYLKNHLKFKIPQSDYLFTSNFQKPYNDCM 280

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           G+F RY + L   L +      + +RH+FA+ ++SNG D+  + ++LGH   + T
Sbjct: 281 GIFARYWKPLFEKLDIQYR-NPYQMRHTFASMMISNGEDILWVSNMLGHTTSAMT 334


>gi|225864449|ref|YP_002749827.1| DNA integration/recombination/invertion protein [Bacillus cereus
           03BB102]
 gi|225788669|gb|ACO28886.1| site-specific recombinase, phage integrase family [Bacillus cereus
           03BB102]
          Length = 292

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/291 (17%), Positives = 99/291 (34%), Gaps = 30/291 (10%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
                 +  F+  +    I +  + +L+   I+        + I + S+      +KS L
Sbjct: 5   RSTFVGYRAFINQHIIPSIGMVALHKLNVMHIQKCYKTAIDRGIANNSVLLMHRILKSAL 64

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
               K+ I + +        KK  +  +   E++        LLH+      I       
Sbjct: 65  NLAVKQNIISRNPADFAEIPKKERTSIQTWTEEEVKKF----LLHSQESRYHIGY----- 115

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI-------------RIVPLLPSV 206
             L    G+R+ E L L  Q++  ++ T+ I                    R +P+    
Sbjct: 116 -LLAITTGMRMGEVLGLRWQDVDFEKHTVTINQTSGHDNKIKKTAKTNSSKRTIPVPKET 174

Query: 207 RKAILEYYDLCPFDL-----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
            +++ ++  L   +             +     G  +    F+    +     G+     
Sbjct: 175 IESLKKHKVLINQEKLRLGSAYQDFDLINCNEFGMIIKKANFRNNFIRAIHNAGV-KEIK 233

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMM 311
            H LRH+ AT LL  G + + I   LGH  +S T  +Y++V      + + 
Sbjct: 234 FHDLRHTHATILLKQGVNPKIISERLGHTDISMTLSVYSHVLPNMQEEAVK 284


>gi|170738181|ref|YP_001779441.1| integrase family protein [Burkholderia cenocepacia MC0-3]
 gi|169820369|gb|ACA94951.1| integrase family protein [Burkholderia cenocepacia MC0-3]
          Length = 398

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 65/367 (17%), Positives = 123/367 (33%), Gaps = 59/367 (16%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
            G+  P+I +   L   + WL         +  T Q+Y  +  + L++      + ++  
Sbjct: 34  SGSAHPQIAATNDLDAVRAWLARFVD----TPTTFQNYRKEAERLLLWAVIACGKPLS-- 87

Query: 62  TIRQLSYTEIRAFIS-------KRRTQK----------------IGDRSLKRSLSGIKSF 98
           ++        R F+                              +   S +++L  +   
Sbjct: 88  SLTHEDLVVYRQFLLAPAPAELWCANGGRKHPRDDPRWRPFYGPLSAASQRQALVILNVM 147

Query: 99  LKYLKKRKITTESNIL--NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
             +L +      + +     R  + +  + R L +    ++ D +      + +     +
Sbjct: 148 FSWLVQAGYLAGNPLALSRQRQRRPAPRVTRHLGQPLWQSVKDAIAAMPRDDARACFHAD 207

Query: 157 SA--ILYLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSVR 207
            A  +  LLY  GLRI+EA   T             ++  L + GKG + R+VP    + 
Sbjct: 208 RARWLFTLLYLGGLRITEAADTTMGQFFCRRDANGHERWWLDVTGKGGRQRLVPATDEMM 267

Query: 208 KAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLG-------- 255
             +  Y              P    L  G   KPL      R ++Q+ R+          
Sbjct: 268 AELTRYRRTHGLPALPLDGEPTPLVLPFGQARKPLTRAALHRIVKQVFRHAAGRLRANGE 327

Query: 256 -------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                  +    +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +      
Sbjct: 328 TGEQAARVLEQASAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHADDDWRHR 387

Query: 309 WMMEIYD 315
              E + 
Sbjct: 388 ETEEKHR 394


>gi|332983390|ref|YP_004464831.1| integrase family protein [Mahella australiensis 50-1 BON]
 gi|332701068|gb|AEE98009.1| integrase family protein [Mahella australiensis 50-1 BON]
          Length = 377

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 56/332 (16%), Positives = 109/332 (32%), Gaps = 57/332 (17%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              WL+ ++    L+  T +SY             + +  +    + +L   +I+ + + 
Sbjct: 60  LDQWLETVKS--NLASSTYESYVQTVN-------LHLKPALGNIALGKLKPIDIQRYYTA 110

Query: 78  RRTQKIGD--RSLKRSLSGIKSFLKYLKKR---------KITTESNILNMRNLKKSNSLP 126
                  D  +++   LS       +              + + +    +   +K+    
Sbjct: 111 ELNGGRKDNKKTVGSGLSSTTVLYHHRVLHRALETAVKWGLISRNPADMVDPPRKAKKEI 170

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             LNEKQ   L+          +   D      ++L    G+R  E L L  +++     
Sbjct: 171 NTLNEKQIHILL----------SGIKDEYLYMPVFLAVMTGMRRGEILGLRWRDVDLQNG 220

Query: 187 TLRIQ----------------GKGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNI 225
            + +                       R + +  +V KA+ ++      +   F      
Sbjct: 221 IIYVTQALYQRKAGIPTFTEPKTPQSKRAIQISDAVIKALEKHKAEQDKNRSYFTSKYAP 280

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
              +     GKP+NP     Y     + LG P     H LRH+ A+ LL  G + + +  
Sbjct: 281 YDLVCCMQDGKPINPESLSSYFADTTKRLGFP--VRFHDLRHTHASLLLKAGINPKIVSE 338

Query: 286 ILGHFRLSTT-QIYTNV---NSKNGGDWMMEI 313
            LGH  +  T   Y++V     K   D   E+
Sbjct: 339 RLGHNSIEITLNTYSHVMPGLQKEAADKFEEM 370


>gi|323146177|gb|ADX32415.1| phage integrase family protein [Cronobacter phage ENT90]
          Length = 345

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 59/277 (21%), Positives = 100/277 (36%), Gaps = 38/277 (13%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIR------AFISKRRTQKIGDRSLKRSLSGIKS 97
           RQ  +  AF    +          ++  R       F    R +++  R+L   L+  ++
Sbjct: 78  RQLAMLHAFECMGEPLAVDFDAQMFSRYRERRLKGDFARSSRVKEVSPRTLNLELAYFRA 137

Query: 98  -FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
            F +  +  +   E+ + ++R  +   S    L   Q   L+         + +      
Sbjct: 138 VFNELGRLGEWKGENPLRHIRPFRTEESEMAWLTHSQIAHLLAECRNSDQADLE------ 191

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
             ++ +    G R SEA  L    I   + T  I+ KG K R VP+  S+ + I E    
Sbjct: 192 -TVVKICLATGARWSEAEGLKKSQISKYKIT-YIKTKGRKNRTVPITESIYRIIPE---- 245

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLL 274
                  N    LF    G            R      G+  P     H LRH+FA+H +
Sbjct: 246 -------NKTGRLFADCYG----------AFRSALERTGIELPAGQLTHVLRHTFASHFM 288

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            NGG+L  +Q +LGH  +  T  Y +    +  +   
Sbjct: 289 MNGGNLLVLQRVLGHTDIKMTMRYAHFAPDHLEEAAK 325


>gi|294619699|ref|ZP_06699115.1| prophage Lp3 protein 1, integrase [Enterococcus faecium E1679]
 gi|291594082|gb|EFF25540.1| prophage Lp3 protein 1, integrase [Enterococcus faecium E1679]
          Length = 401

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 75/237 (31%), Gaps = 36/237 (15%)

Query: 99  LKYLKKRKITTESNILNMRNLK-----KSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
             Y    +I T + +  +   +       +       +++ +  ++ +            
Sbjct: 152 FDYAASLQIITSNPMKLVSIPRGEALDIEDKNIEFYTKEELIEFLEAIRNDDDER----- 206

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------------GDKI 197
                   LL   G+R  EA +LT  +I     TL I                       
Sbjct: 207 ---YLFFSLLAFTGIRKGEAFALTWSDIDFKSKTLNINKTVTRGYQGRLIVNTPKSKSGK 263

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG---IRGKPLNPGVFQRYIRQLRRYL 254
           R + L   +   + +YY      + +  +  +F     +    ++        +      
Sbjct: 264 RKIYLDNDLISLLRKYYIKNKTIVTIQSENLIFHHDGLLYNPTVSRSWLNVIYKHHPE-- 321

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWM 310
            L    T H  RH+ A+ L  +G  L+ +Q  LGH  + TT  IYT+V        +
Sbjct: 322 -LTKRITTHGFRHTHASLLFESGASLKDVQERLGHADIQTTSNIYTHVTETQNKKVI 377


>gi|218439453|ref|YP_002377782.1| integrase [Cyanothece sp. PCC 7424]
 gi|218172181|gb|ACK70914.1| integrase family protein [Cyanothece sp. PCC 7424]
          Length = 384

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 104/283 (36%), Gaps = 26/283 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++++    E  +   T++ Y       L F           Q +  L       F++ 
Sbjct: 104 FESFMEYKAKE--VCSKTMEKYRATYNYLLKFFCD--------QPVNFLDEAVTEKFMNW 153

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           + +Q +    +KR +  +++  ++ K      E     ++   K    P+  + ++  T+
Sbjct: 154 QFSQGLSPDQVKRRMEELEACWRWHKAENNPWEKMGKRIKVPPKQR--PKPFSREEINTI 211

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-----QG 192
           ++         T       +  +  L+G G RI E + L  Q+I DD S + I     +G
Sbjct: 212 IEGF------RTDRYYCSYADFVEFLFGTGCRIGEVIGLRWQHISDDCSQIWIGEQLTRG 265

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ-RYIRQLR 251
           K    +          A L+   +     N +    +F   +G  +N   F+ R  ++  
Sbjct: 266 KRKAAKRNRARTITLTAKLQNLLIRRKQSNPDPDSLVFTSPKGGAINDHNFRNRAWKKTL 325

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
             LG+      +  RH+  +H L    +   +  + GH  + T
Sbjct: 326 TRLGIDYR-KPYNTRHTLISHALDLQMNPVMVAQLTGH-DVKT 366


>gi|154500802|ref|ZP_02038840.1| hypothetical protein BACCAP_04487 [Bacteroides capillosus ATCC
           29799]
 gi|150270302|gb|EDM97628.1| hypothetical protein BACCAP_04487 [Bacteroides capillosus ATCC
           29799]
          Length = 409

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 55/310 (17%), Positives = 106/310 (34%), Gaps = 52/310 (16%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK---------- 82
             T ++YE         +  +    I    +++L+  +I+   +  +T            
Sbjct: 90  PNTAKTYEN-------MIENHIVPAIGGVKLKRLTAIQIQKMYNDSKTNGRVQRFEKKTD 142

Query: 83  --IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +   +++R    + S LK   K +I   +   N R   K       +  ++    +  
Sbjct: 143 TALSGSTVRRIHMVLSSALKQAVKERIIPYNPCDNCRIPPKEKKEMAIIPSEKLGVYLSE 202

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---------- 190
              +              + +L    GLR  E L+L   ++      L +          
Sbjct: 203 AEKYGVLP----------MFFLELSSGLRRGELLALRWDDLNVKDRILSVSKQVTRIDGE 252

Query: 191 -----QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQ 244
                    + +R V L       ++  ++  P          LF   R     +P    
Sbjct: 253 LVITEPKTKNSVRKVALSQQAVDILVREHEQHP------DNPILFPSPRTGGYWSPDAVS 306

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNS 303
           R  R+L    G+      H LRH+FAT  LS+G D++++ S+LGH+    T   YT++ +
Sbjct: 307 RINRKLLAKAGIEERVRFHDLRHTFATMALSSGVDVKTLSSMLGHYSAGFTLDTYTHITN 366

Query: 304 KNGGDWMMEI 313
                   +I
Sbjct: 367 DMQRGAAEKI 376


>gi|317057150|ref|YP_004105617.1| integrase family protein [Ruminococcus albus 7]
 gi|315449419|gb|ADU22983.1| integrase family protein [Ruminococcus albus 7]
          Length = 378

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 103/258 (39%), Gaps = 29/258 (11%)

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEKQALT 136
            ++  +   ++K+    ++S  +   ++    ++   N+   K+  S   +AL E +   
Sbjct: 123 MQSYDLNPATVKKLYVIVQSIFRRGAEQGFIRDTPCRNVVLPKRKKSRKNKALEEDKLKR 182

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK--- 193
            +         E+K  D     I+ +L   G+R  E L L  ++I  + +T+ I      
Sbjct: 183 FM------AYLESKPWDEDFKRIIKVLLYTGMRSGECLGLAWEDIDFENNTISINHTLTD 236

Query: 194 ------------GDKIRIVPLLPSVRKAIL---EYYDLCPFDLNLNIQLP--LFRGIRGK 236
                          IRI+ +   ++K +L   +Y +     L  +   P  +F   RG 
Sbjct: 237 IGGKHELTDPKTESSIRIIGMGQELKKVLLAQKDYIEKLKLALGDDFAHPEMVFVSARGN 296

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT- 295
             +     + +++  +        T H LRH  AT LL++G DL+ +   LGH  ++ T 
Sbjct: 297 YRDRNSVYQSLKRFTKGTEFE-DMTLHQLRHCNATMLLNSGIDLKVVSEHLGHCDVNVTA 355

Query: 296 QIYTNVNSKNGGDWMMEI 313
            IY +V  K       +I
Sbjct: 356 DIYADVLRKTKARTAEQI 373


>gi|300907179|ref|ZP_07124842.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|301303606|ref|ZP_07209728.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|300401054|gb|EFJ84592.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|300841105|gb|EFK68865.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|315257836|gb|EFU37804.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 85-1]
          Length = 288

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 93/239 (38%), Gaps = 29/239 (12%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + S++  +     ++    S + S F +  +  + +  + + NMR    +      L  +
Sbjct: 56  YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 115

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q + L+         + K  D   + ++ +    G R  EA++LT   +   + T  ++ 
Sbjct: 116 QIVELL--------ADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITF-VRT 166

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+   + + I+       F                       FQ      + 
Sbjct: 167 KGKKNRSIPISKELYEEIMALDGFNFF-------------------TDCYFQFLSVMEKT 207

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++   +    + 
Sbjct: 208 SIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHLETALR 266


>gi|300361345|ref|ZP_07057522.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03]
 gi|300353964|gb|EFJ69835.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03]
          Length = 394

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 57/289 (19%), Positives = 112/289 (38%), Gaps = 49/289 (16%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           I ++   +++ +  K  T+ +  R +   L  ++S  +Y  +     ++ +  +   KK+
Sbjct: 112 IDRIQVKDLQKWADKLATELVKYRDV---LFIMRSLYEYGMRLGYVADNELSRIIIPKKT 168

Query: 123 NSLPR-----ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
               R       ++++  T ++          K ++ R  A   LL   GLR  EAL+LT
Sbjct: 169 TRKRRDTEHNFYSKEELDTFLEV--------AKEVNIRVYAYFKLLSSTGLRKGEALALT 220

Query: 178 PQNIMDDQSTLRIQ----------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
            ++I    +T+ +                       RIVPL  ++++ +L+Y        
Sbjct: 221 WKDIDLINNTISVNKTISFGIGNKQVVNTPKTKQSKRIVPLSANLKQVLLDYRKSEKILS 280

Query: 222 NLNIQL----PLFRGIRGKPLNPGVF--QRYIRQLRRYLGLP---------LSTTAHTLR 266
           +          +      + L+       +   +  +   L             T H  R
Sbjct: 281 DKLFHTIAGNYVSLSKPTQWLSEVYAKDHKINEKFAKENKLDENYVLNKDLRHITLHRFR 340

Query: 267 HSFATHLLSN-GGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           H+F T L+ N     +++Q +LGH  +  T  IYT+VN+KN  D +  I
Sbjct: 341 HTFTTLLIENTNVKPKTVQMLLGHANIQMTLDIYTHVNNKNKEDAISSI 389


>gi|149196782|ref|ZP_01873835.1| prophage DLP12 integrase [Lentisphaera araneosa HTCC2155]
 gi|149139892|gb|EDM28292.1| prophage DLP12 integrase [Lentisphaera araneosa HTCC2155]
          Length = 397

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 52/297 (17%), Positives = 110/297 (37%), Gaps = 34/297 (11%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
            LTL  Y     + + FL  +      ++ + +++      F+       +   +  +  
Sbjct: 95  DLTLVRYSQYWSKLVKFLEKHYS---NLEYVDEINAAMADEFLENL---TVASGTYNKYN 148

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           + +K +   + K      +        ++     R LN ++   L               
Sbjct: 149 NFLKRYFMTVGKECGVHINPFDGFATKRQQKKSWRELNSEEIDLL-----------KNLP 197

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----GKGDKIRIVPLLPSVRK 208
            + + A+  +    G+R+ +A  L   +I  D+  L        K +K+  +P+L  ++K
Sbjct: 198 KSDDWALCNIGIYTGMRLKDAALLKWADIDLDRDILTFMPSKTAKQEKVIQLPILSELKK 257

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-STTAHTLRH 267
             L         + L  Q+          L+     RYI+ L   L +       H+ RH
Sbjct: 258 IFLWIKQKGKPSVYLLPQMAALYSRDQYSLS-----RYIQDLFTDLKITDGKVGFHSFRH 312

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
           +F +    NG     +Q+I+GH   + T+ YT+++ ++   W+        P+ T+K
Sbjct: 313 TFVSECAKNGVPQSIVQAIVGHGSPAMTRHYTHIDVESTRKWLE-------PTSTKK 362


>gi|148615582|gb|ABQ96624.1| IntI1 [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 167

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 78/186 (41%), Gaps = 27/186 (14%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVNWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRI 190
             T+ +
Sbjct: 162 HGTIIV 167


>gi|298208931|ref|YP_003717110.1| putative transposase [Croceibacter atlanticus HTCC2559]
 gi|83848858|gb|EAP86727.1| putative transposase [Croceibacter atlanticus HTCC2559]
          Length = 416

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 72/309 (23%), Positives = 127/309 (41%), Gaps = 32/309 (10%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI------- 83
           L   TL++Y+  ++    FL   T+ K     ++ ++Y+ I  F    RT K        
Sbjct: 125 LKPGTLKNYKTTSKYLKKFLK--TKMKTDDVFLKHINYSFITEFEHFLRTFKSKTHRPTP 182

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
            +  + + L  +K  +   +K +   +       +LK +      L+E +   L+     
Sbjct: 183 SNNGVMKHLERLKKLMNLAQKLEWVAKEPFAKF-SLKFTKVEREFLDEVEVQELIKF--- 238

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSL----TPQNIMDDQSTLRIQGKGDKIRI 199
            TSH T     R+  I       GL   +  +L      + I         + K D    
Sbjct: 239 -TSHRTALTQTRDVFIFAC--YTGLSWIDVKNLSQDHIVRGIDGSNWIYTAREKTDTPVK 295

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +PLLP   K +  Y       ++  + LP++   +          +Y++++   LG+   
Sbjct: 296 IPLLPIPEKLLSRY---AEKMMDSELLLPVYSNQKT--------NKYLKEIAIELGIRKK 344

Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
            T H  RH+FAT + LSNG  + ++  +LGH +LSTTQIY  V      + M ++ D+  
Sbjct: 345 LTFHVARHTFATTVTLSNGVPIETVSKLLGHTKLSTTQIYARVIESKVSNDMNKLRDELR 404

Query: 319 PSITQKDKK 327
             I   +KK
Sbjct: 405 DKIDINNKK 413


>gi|119714858|ref|YP_921823.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119535519|gb|ABL80136.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 332

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 90/229 (39%), Gaps = 15/229 (6%)

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
              LS ++ F  YL    +        +    K  ++P   ++     L+       + E
Sbjct: 79  ATRLSLVRRFAGYLNANDVDVPVIPRGLLPAPKPRAVPFIYSQHDLDALLTACDRVFTDE 138

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
              I A    ++ LL   GLRI EAL L   ++      L I+      R+VPL P+   
Sbjct: 139 --RIAATMRTVIGLLAATGLRIGEALKLRVGDVDHVNDLLVIKAAKSVERLVPLHPTTTA 196

Query: 209 AILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA----H 263
           A+++Y  L      N +   P+F    G       F +  R +R   GL     A    H
Sbjct: 197 ALMDYITLPARTATNPDPDGPVFVTANGTGYIYVSFYKMFRAVREEAGLTPRGRARPRLH 256

Query: 264 TLRHSFAT-HL---LSNGGD----LRSIQSILGHFRLSTTQIYTNVNSK 304
            LRH+FAT H+    ++ GD    L  + + LGH   + T  Y +   +
Sbjct: 257 DLRHTFATAHMTAAYAHDGDPERVLSLLATWLGHSDATHTYWYLSATGE 305


>gi|237721192|ref|ZP_04551673.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229450027|gb|EEO55818.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 419

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 55/302 (18%), Positives = 109/302 (36%), Gaps = 29/302 (9%)

Query: 14  LLKERQNWLQNL--EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           LL   + +++N    +    ++ +L  Y       + FL   ++ K++      L  + I
Sbjct: 121 LLSYFRLFMRNFEKRVGINRTESSLNGYRNSYDHLVRFLQ--SQYKLSDIPFAALDRSFI 178

Query: 72  RAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
             F    RT+  +   ++      +K+ +       I T    +            + L 
Sbjct: 179 EKFDLHLRTECHLAPGTIVNLTVRLKTIVGEAIADGIITAFPFVGYE-PTHPQPEQKYLT 237

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            ++   ++   L    H       R+  +       G+  S+   LT +N+   +  +  
Sbjct: 238 TEELNRIMTTPL----HSRTLYHVRDLFLFSC--YTGIPYSDMCMLTNENLSLAEDGIWW 291

Query: 191 ----QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
               + K      +PL+      I +Y D+ P             G      +      Y
Sbjct: 292 IRSSRKKTGVDFEIPLMELPLHIIEKYRDVAPE------------GKLLPMYSNSSLNHY 339

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           ++Q+    G+      HT RH++AT + LS+G  L ++  +LGH R+ TTQ+Y  V    
Sbjct: 340 LKQIAVLCGIERKLVFHTARHTYATEITLSHGVPLETVSKMLGHSRIGTTQLYAKVTDNK 399

Query: 306 GG 307
             
Sbjct: 400 ID 401


>gi|323495619|ref|ZP_08100692.1| hypothetical protein VISI1226_05828 [Vibrio sinaloensis DSM 21326]
 gi|323319351|gb|EGA72289.1| hypothetical protein VISI1226_05828 [Vibrio sinaloensis DSM 21326]
          Length = 442

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 96/276 (34%), Gaps = 25/276 (9%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           +   ++     AF+     + +  ++++  L+  + F  ++   +  T +   N+R +KK
Sbjct: 155 SPDSVTPRHASAFLKSLYGRGLSAKTVRDYLAATRQFYSWMITMEYATVNPFENVR-VKK 213

Query: 122 SNSLP----RALNEKQALTLVDNVLLH------TSHETKWIDARNSAILYLLYGCGLRIS 171
              LP    R  + ++ + L  +           S         +  I YLL   G R+S
Sbjct: 214 DVRLPSEQRRRWSREELVKLFSHDNFAGVIGTNDSTVNYQKKLEDYWIPYLLLFTGARVS 273

Query: 172 EALSLTPQNIMDDQSTLRIQ---------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           E   L  +++ + +    I               IR +PL   +       Y    +   
Sbjct: 274 EICQLRTEDVQEREGVWCISVNEDEGKTVKTKASIRHIPLHKELLNMGFLSYVNHRYGAR 333

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA--HTLRHSFATHLLSNGGDL 280
            +    +    +    +   F +   ++ + +G   +     H LRH+F     + G   
Sbjct: 334 KDKLFDIRPYGKTMCWSEQ-FGKRFTKVLKAIGFTGAQRPTLHGLRHTFVDSAQAIGLPE 392

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             +  I+GH + S T  Y     +     +  + D+
Sbjct: 393 NEVCEIVGHAKQSMT--YGRYGKRLSLMRLKSLIDE 426


>gi|187933324|ref|YP_001886146.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum B str. Eklund 17B]
 gi|187721477|gb|ACD22698.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum B str. Eklund 17B]
          Length = 358

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 60/292 (20%), Positives = 107/292 (36%), Gaps = 31/292 (10%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T++ Y+  T +F+          ++   ++ +    I+A I    ++     ++   L
Sbjct: 87  PNTIEKYKNATAKFI---------NLSSMRVKDIKKMHIQAGIDCLVSEAKASSTIITYL 137

Query: 93  SGIK---SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           + IK   ++ K            +  +   KK      AL + +   L+D        + 
Sbjct: 138 TQIKLMLNYYKDNYDSNYIV--PVEKLSIPKKKIKEKLALTKDELFKLLD--------KL 187

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           K ID     +  +   CGLRI E   LT  +I      L +  +  K++   +     K 
Sbjct: 188 KNIDDDIYLVSLVAGTCGLRIGEIEGLTWSDIKIKTMELDVNKQWKKLKDGTIGFGNLKN 247

Query: 210 ILEYYDLCPFD-----LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
                   P D     L      P     R   LN       +    +  G     T H 
Sbjct: 248 NRRRMVPLPTDTLKKLLKYKESHPTDLTNRIIILNKYTLANKLDSTLKKAG---GVTIHE 304

Query: 265 LRHSFATHLLS-NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           LRH++AT L++ N  D ++I  ILGH    T + Y++V ++   +   EI +
Sbjct: 305 LRHTYATILIASNTMDFKTIAQILGHNVEQTLRTYSHVTNEMYKNAKKEIAN 356


>gi|89147496|gb|ABD62608.1| integrase [uncultured bacterium]
          Length = 163

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/93 (37%), Positives = 45/93 (48%)

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           A  E+     F        P         +     QR I+   R        + HTLRHS
Sbjct: 70  ACREWGWQYVFPSGNISSDPRTGRKSRYHIYSQSIQRAIKMALRKADFIKPASTHTLRHS 129

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           FATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 130 FATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|323442575|gb|EGB00203.1| hypothetical protein SAO46_1495 [Staphylococcus aureus O46]
          Length = 409

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 123/346 (35%), Gaps = 37/346 (10%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ++ N+  ++ +         WL++ +   G    T++  + +T      +    + K+ I
Sbjct: 58  LKHNSTKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNTNT----VKNAIDSKVLI 113

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             I      +I    +K  +       +    S  K   KY     I+    I   +  K
Sbjct: 114 SKITHTYLQDIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAK 173

Query: 121 KSNSLPR----ALNEKQALTLVDNVLLHTSHETKWIDARNS----AILYLLYGCGLRISE 172
             N L       L E +   L+        H+      RN     A++      G+RI E
Sbjct: 174 TRNELQAKRNNYLEESEVKELLQCFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGE 233

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIV------------------------PLLPSVRK 208
            L++   NI  +  TL I G  + +                             +  ++K
Sbjct: 234 LLAIKTDNINIENKTLEIDGTINWVTDTETGAFGVKETTKTSKSYRTIGLTTQSINLLKK 293

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            +LE      ++     +  +F    G P++       I++      +    T HTLRH+
Sbjct: 294 LMLENKKENQWNAKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHT 353

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
             + L   G +L++IQ+ +GH    TT  IYT+V  K   D M ++
Sbjct: 354 HISTLAQLGINLKAIQARVGHSDYKTTLDIYTHVTDKMAQDMMNKL 399


>gi|322411263|gb|EFY02171.1| Integrase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC
           27957]
          Length = 381

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 55/310 (17%), Positives = 119/310 (38%), Gaps = 38/310 (12%)

Query: 36  LQSYECDTR--QFLIFLAFYTEEKITI---QTIRQLSYTEIRAFISKRRTQKIG---DRS 87
           L+SY+   +   F+          I I     + +L+ + I+ FI+    Q +      S
Sbjct: 78  LKSYQLTVKPQTFVATKRMLHNHLIPIFGSLKVEKLTVSYIQRFINDLSNQLMHYGVVHS 137

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNM---RNLKKSNSLPRALNEKQALTLVDNVLLH 144
           + R +      L+Y    ++   +   ++   +  K+ N + + +  +    L+  +   
Sbjct: 138 INRRV------LQYGVSLQLIPFNPARDVILPKVPKRENKVIKFIASEDLKELLSYMERL 191

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG------------ 192
            +   K+I   +  +  +L   G R  EA++L   +I  +  T+ I              
Sbjct: 192 AN--KKYIYYFDYVLYNVLLATGCRFGEAVALEWSDIDLEVGTIDINKNYSRLLKLLGTP 249

Query: 193 -KGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIR 248
                 R++ +       +  Y +      L ++   P  +F     +  N G  Q  + 
Sbjct: 250 KSKAGFRVISIDKKTVNMLKLYKNRQRQLFLEVSDCAPKVVFATPNKEYQNMGTRQDSLD 309

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGG 307
           +    + +P   T H  RH+ A+ LL+ G   + +Q  LGH  L+ T  IY++++     
Sbjct: 310 RRCAEIAIPR-FTFHAFRHTHASLLLNAGISYKELQYRLGHATLAMTMDIYSHLSKDKEK 368

Query: 308 DWMMEIYDQT 317
           + +   Y++ 
Sbjct: 369 EAV-SFYEKA 377


>gi|295099640|emb|CBK88729.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87]
          Length = 164

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 77/174 (44%), Gaps = 12/174 (6%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L +   ++  NL +    SK T+++Y  D   ++ +L      +  I  + +++   + 
Sbjct: 2   DLHEALSDYKLNLSLVENKSKKTIEAYMSDLTHYINYL-----NQKNINNVEEITILTVD 56

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            +++   T++    S+ R L+ ++SF K++     + +   L +   K +  LP   + +
Sbjct: 57  NYLNSM-TKEYSSNSINRVLASVRSFHKFISLNHESIKDPTLYIHTHKHNEHLPIYASVQ 115

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
               L D+           ID  +  IL  LY CGLR+SE  SL   ++   + 
Sbjct: 116 DLKVLFDSF------SNSDIDIYHKTILLTLYSCGLRVSELCSLKRNDVHLSEK 163


>gi|168208118|ref|ZP_02634123.1| site-specific recombinase, phage integrase family protein
           [Clostridium perfringens E str. JGS1987]
 gi|170660597|gb|EDT13280.1| site-specific recombinase, phage integrase family protein
           [Clostridium perfringens E str. JGS1987]
          Length = 312

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 48/292 (16%), Positives = 109/292 (37%), Gaps = 24/292 (8%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E    ++ +  + ++  L++    S  T+++YE   ++F+               + +++
Sbjct: 12  EQFDMKISELLEEYITELQV-NQCSIHTIKTYETAFKRFIC--------DEGDLRLSEIN 62

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
              I  F +  +  K+  R++   +S +++   Y  K++   +   L ++ +K    +  
Sbjct: 63  TKVINHFKNNLKD-KVSPRTINTYISHLRAVFNYAYKQEYMDK---LEIKLIKVQQKVKY 118

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
              +++       +LL    +  + +        ++   G+R  E LSL   N    +  
Sbjct: 119 VPTDEEI-----EILLSEGRKETYSNYVCRLACMVMCTTGIRCLEFLSLNIGN--FTKEY 171

Query: 188 LRIQGKGDKI-RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           +      +++ R +P+   V K I  Y      D   +   PLF  +  +      F++ 
Sbjct: 172 ISTNHTKNRMLRYLPIPNLVSKEIRSYIKNYRKDAKQD--DPLFVSVYLRRYTDKGFRKS 229

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            R   +   +      H LR  F T  L+N  +   +  I GH        Y
Sbjct: 230 FRDFAKK-KIGHEIGTHCLRRYFITKSLNNNANPILLAKITGHHDTRMFNYY 280


>gi|260907655|ref|ZP_05915977.1| phage integrase family protein [Brevibacterium linens BL2]
          Length = 657

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 67/338 (19%), Positives = 115/338 (34%), Gaps = 36/338 (10%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           V+  L +E   +L+  +        T+       + F +FLA    +  +I  + +    
Sbjct: 215 VTAPLREEIIGYLERKKATCQ--TKTVSVLATRLKHFGVFLATIDPDLSSIAGLDR--RR 270

Query: 70  EIRAFISKRRT-------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM----RN 118
            I  ++S           Q I      R +  + +FL  + +      +    +      
Sbjct: 271 HIEPWLSSLLDTVSDKDGQPISIGDRNRRVVAVTTFLTDITEWGW-DVAPARKVIFRDDI 329

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
            K    LPR L       L + +  H ++E   +       L +   CGLRI E L L  
Sbjct: 330 PKLPQVLPRYLPIDADRRLQEALTDHPTNELAALA------LRVQRACGLRIGELLDLEL 383

Query: 179 QN---IMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPF-----DLNLNIQLPL 229
                I  + + L+I  GK    R+VPL       I     +                  
Sbjct: 384 DCVHEIDGNGAWLKIPLGKMATERMVPLDVETLDLIDRITQIRSHGRPLPHPRYRRSAQF 443

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
                G+ L     +  +       GL    T+H LRH++AT L++ G  L+++ ++LGH
Sbjct: 444 LFTYLGRRLTQQGVRAELDHAADIAGLE-HVTSHQLRHTYATALVNAGVSLQALMALLGH 502

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYD----QTHPSITQ 323
                +  Y  +      +      D    QT P  T 
Sbjct: 503 VSAEMSLRYGRLFDSTVREEYERALDLAKQQTAPQATP 540


>gi|290969281|ref|ZP_06560806.1| site-specific recombinase, phage integrase family [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290780787|gb|EFD93390.1| site-specific recombinase, phage integrase family [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 411

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 55/311 (17%), Positives = 112/311 (36%), Gaps = 55/311 (17%)

Query: 52  FYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE 110
            +  E    + I ++ Y+++  F       + +   +L+   + +    +   +  I   
Sbjct: 100 RFVREGFGKRKIGEIKYSDVLYFYYDLLNDRGLQVNTLETIHTVLHPTFQLAVRDDIIRN 159

Query: 111 SNILNM-----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
           +    +     +   K  ++  AL  +Q    ++ +       +  I    ++I  +L G
Sbjct: 160 NPSDGVMAEIKKKNTKKKNMRHALTIEQQRAFMNYIA------SSPIFVHWNSIFTVLLG 213

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDK----------------------IRIVPLL 203
            G RI E + L   +I  ++ T+ I                             RI+P++
Sbjct: 214 TGCRIGEVVGLRWSDIDMEKRTIDINHSMTYYPRRTDTYKCEFKVSLPKTEAGTRILPMM 273

Query: 204 PSVRKAILEYYDLCPFDLN-----LNIQLPLFRGIRGKPLNPGVFQRYIRQL-------- 250
             V +A+   Y+    D         +   +F    G   NP    R IR++        
Sbjct: 274 QPVYEALQSEYERQKEDGFCTAVVDGMSGFIFSNRFGMIHNPAAINRAIRRILGAHNAEE 333

Query: 251 -------RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVN 302
                  +R   +    + H LRH+F +    N  +++ IQ I+GH  + TT  IY  VN
Sbjct: 334 IVKAKKEKREPIIIPHFSCHHLRHTFCSRFCENETNIKIIQEIMGHASIETTMDIYAEVN 393

Query: 303 SKNGGDWMMEI 313
           S    + + ++
Sbjct: 394 SDKKKESIEKL 404


>gi|70905575|gb|AAZ14841.1| orf/DNA integrase fusion protein [Achromobacter denitrificans]
          Length = 287

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 50/98 (51%)

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
             V++ +           + +   P    +R   +    FQR  ++     G+    T H
Sbjct: 168 DDVKRYLTWLAVERDVAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPH 227

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           TLRHSFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 228 TLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 265


>gi|295085005|emb|CBK66528.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 403

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 59/332 (17%), Positives = 124/332 (37%), Gaps = 38/332 (11%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYEC------DTRQFLIFLAFYTEE 56
            N++PE +      ER+     L + R     +  +Y        + RQF+        +
Sbjct: 97  ANSVPEYLLQAGEVERER----LRV-RSKEINSTSTYRQSKTTQLNLRQFI---ESRGMK 148

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
            I    I +      + F+ K    + G   +   L  +   +     R+I   + I ++
Sbjct: 149 DIAFSDITEEFAESFKVFLKKELGHRNGH--VNHCLCWLNRLIYIAVDREILRANPIEDV 206

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              +K     R ++  +   +++     T      ++      ++     GL  ++  +L
Sbjct: 207 AYERKETPKLRHISRSELKRMME-----TPLPDPMMELARRTFIFSSL-TGLAYADTRAL 260

Query: 177 TPQNI---MDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
            P++I    + +  +RI+  K D    +PL P   + +  Y          +   P+F  
Sbjct: 261 HPRHIGTTSEGRRYIRIRRAKTDVEAFIPLHPIAGQILELYNT-------TDDDRPVFPL 313

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                    V    +  +   LG+  + + H  RHSF T  L+ G  + SI  ++GH  +
Sbjct: 314 PV-----RDVLWYEVHGMGVALGMKENLSYHMARHSFGTLTLTAGIPIESIARMMGHTNI 368

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
            +TQ+Y  V  +     M  + ++  P+  ++
Sbjct: 369 DSTQVYAQVTDRKISSDMNRLMERRKPAAGKE 400


>gi|229137159|ref|ZP_04265778.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST26]
 gi|228646331|gb|EEL02546.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST26]
          Length = 378

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 49/313 (15%), Positives = 108/313 (34%), Gaps = 38/313 (12%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           +  L +  Q WL+N   +R +   T  +Y       +I +       I    ++ L    
Sbjct: 62  NLTLSEYLQEWLENTAKQR-VRDTTFINYRRAVNSRIIPV-------IGSHKLKDLKPLH 113

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
            + F+     +++  + ++     +K  L+   K ++  ++   ++   +    +    +
Sbjct: 114 GQRFVKSLIDEELSPKYIEYIFIVLKGALEDAVKWELLYKNPFEHVEIPRPRKVVNNTWS 173

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            ++  T +           K+ +     +  L    G+R  E L L  +N+   +  + +
Sbjct: 174 IEETKTFLTY--------AKFDNPIYYHLFLLALNTGMRRGELLGLKWKNVDLVEGKVSV 225

Query: 191 Q---------------GKGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLF 230
                                 R++ +  S+ K +  Y                    +F
Sbjct: 226 TETLIYDELGFRFTEPKTSGSKRLISIDQSLCKELKSYKAKQNEFKLAIGKAYEDNDLVF 285

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
               G+P+ P        +  +   +P     H LRH+ AT LL  G + + +   LGH 
Sbjct: 286 SREDGRPIYPRTLTTVFERFIKTAQVPK-IRFHDLRHTHATLLLKLGINPKIVSERLGHN 344

Query: 291 RLSTT-QIYTNVN 302
            + TT   Y++V 
Sbjct: 345 SIKTTLDTYSHVT 357


>gi|157325251|ref|YP_001468673.1| Int [Listeria phage B025]
 gi|66733257|gb|AAY53074.1| Int [Listeria phage B025]
          Length = 384

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 112/292 (38%), Gaps = 37/292 (12%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T+  Y+    QF+ +      EKI + +I  + Y   + FI+          ++   
Sbjct: 76  SQSTINLYDLAYNQFVDYFN----EKIKLNSIDAVQY---QQFINHLSVD-YAISTVDTR 127

Query: 92  LSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
              I++            ++     ++     + +  + +   +   L++        E 
Sbjct: 128 HRKIRAIFNKAVHLGYMKKNPATGAHISGQDVAKTKAQFMETDKVHLLLE--------EL 179

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-------------KGDK 196
               + + A+++L    G+R  E ++LT ++I   + ++ +               K  K
Sbjct: 180 AKFHSVSRAVIFLAVQTGMRFEEIIALTKKDINFTKRSITVNKAWDYKYTNTFIDTKTKK 239

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLN----LNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
            R++ +  S  + +  Y       +      N  + LF     KP++     + ++++  
Sbjct: 240 SRVIYIDNSTVQYLQSYLTWHTAYIKEHDIKNPLMLLFITYHNKPIDNASCNKALKKICN 299

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
            +      T H LRH+     +  G D+  +   LGH  ++TT + Y++++S
Sbjct: 300 TID-SEPVTLHKLRHTHTGLCVEAGMDIIYVADRLGHDDINTTLKYYSHLSS 350


>gi|306828134|ref|ZP_07461397.1| pathogenicity island protein [Streptococcus pyogenes ATCC 10782]
 gi|304429671|gb|EFM32717.1| pathogenicity island protein [Streptococcus pyogenes ATCC 10782]
          Length = 233

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 80/230 (34%), Gaps = 26/230 (11%)

Query: 106 KITTESNILNMRNLKK-------SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
                + ++++   K+            + L++K+      N+      + +       A
Sbjct: 2   DYIDVNEMIHVELPKEILTAEQAKKKKDKFLDQKEFKLFAQNLREEVYRDYRVKKYLRIA 61

Query: 159 ILYLLYGCGLRISEALSLTPQ-NIMDDQSTLRIQGK-------------GDKIRIVPLLP 204
           I+  LY  G+R  E   L    +I   + T+ IQ                   RI+ +  
Sbjct: 62  IV--LYLTGMRYGELAGLNISKDIDFKKKTIHIQHTFNFRTKQRTTPKTKGSDRIIEVSD 119

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           +V K I E                LF    G P  P       ++  +  G+  + T H 
Sbjct: 120 TVLKNIQEQLAENIR--AGFETDYLFINTLGFPTTPERVIGAFKRHGQKAGIEKNITTHI 177

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
            RHS  + L   G  L +I   +GH    TT ++Y++V  +   +   ++
Sbjct: 178 FRHSHISLLAEIGIPLPAIMERVGHSDSKTTLEVYSHVTLQMTTNLAKKL 227


>gi|120435585|ref|YP_861271.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|120435707|ref|YP_861393.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|117577735|emb|CAL66204.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|117577857|emb|CAL66326.1| phage integrase family protein [Gramella forsetii KT0803]
          Length = 330

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 92/234 (39%), Gaps = 13/234 (5%)

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL--VDNVLLHTSHE 148
            +S +  F  YL    I +      +    K+  +P   ++K+   L  V + L      
Sbjct: 82  RISHLVQFSSYLCDLGIPSYVP--RLPRFPKNTFIPYIYSQKEIHLLFKVCDELRIGMLN 139

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVR 207
                     ++ LLY  G+R+ EA++L  +++  ++  L ++  K  K RI+P+  S+ 
Sbjct: 140 KNSCMICMPTLIRLLYCTGIRMGEAIALKDEDVNLEEGYLLVRDSKNGKQRIIPISQSLV 199

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
               EY +      +       F             + + ++     G+P S   H LRH
Sbjct: 200 SVCREYLEYRNLLPSRKTSSGYFFVKVNGHKCGQSVRAWFKKCLDRAGIPGSARLHDLRH 259

Query: 268 SFAT----HLLSNGGDLRS----IQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +FA      +  +G DL +    + + LGH  +  T  Y  + S    + + +I
Sbjct: 260 TFAVTSLAQMAESGIDLYASLPILSNYLGHQSIGATNHYVRLTSNMYPNLINDI 313


>gi|13095863|ref|NP_076752.1| integrase [Lactococcus phage bIL310]
 gi|15672029|ref|NP_266203.1| integrase [Lactococcus lactis subsp. lactis Il1403]
 gi|12722887|gb|AAK04145.1|AE006243_9 prophage ps1 protein 23, integrase [Lactococcus lactis subsp.
           lactis Il1403]
 gi|12831052|gb|AAK08405.1|AF323671_1 integrase [Lactococcus phage bIL310]
          Length = 394

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 53/313 (16%), Positives = 111/313 (35%), Gaps = 38/313 (12%)

Query: 30  GLSKLTLQSYECDTRQF-LIFLAFYTEEKITIQTIRQLSYTEIRAFI---------SKRR 79
           G+   T+Q  +     + L  L  Y  +K+    ++Q+    +  ++         +  R
Sbjct: 83  GVKPRTVQIMQTRLNNYVLPALGEYRIDKVNSIILQQI----VNQWMINASQPLNGAYHR 138

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS----NSLPRALNEKQAL 135
            +  G    K   + ++   K+     +  ++  +N+   K          + L  +Q  
Sbjct: 139 PKGKGKD-FKIYFNIVERIFKHALSLGLVKDNPCVNVIVPKVRLESTEKKVKHLTAEQLK 197

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG- 194
              +   +    + K+ +   + +  LL   GLRI EA++L+  +I     ++ +     
Sbjct: 198 IFFEY--IGALPKEKYTNELMTGLCRLLVASGLRIGEAVALSWSDIDFKTGSVSVSKTTL 255

Query: 195 -----------DKIRIVPLLPSVRKAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                         RIV +     + +  +          +    Q  +F    G  L+ 
Sbjct: 256 RAVIQSTPKTDKSNRIVLIDSKAVEVLKHWELFQAKYFMSIGKGKQELVFPNRTGGVLDY 315

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYT 299
              + ++ +  R   LP     H  RHS A+ LL+     + IQ  LGH  +  T   Y+
Sbjct: 316 QTMRPFLIKWLRACQLPQ-VGFHGFRHSHASLLLNADVPYKEIQERLGHASIKMTMDTYS 374

Query: 300 NVNSKNGGDWMME 312
           ++ S N    +  
Sbjct: 375 HLESDNKIKAVER 387


>gi|257422023|ref|ZP_05599013.1| predicted protein [Enterococcus faecalis X98]
 gi|257163847|gb|EEU93807.1| predicted protein [Enterococcus faecalis X98]
 gi|315157051|gb|EFU01068.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0043]
 gi|315157428|gb|EFU01445.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0312]
          Length = 378

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 62/330 (18%), Positives = 117/330 (35%), Gaps = 48/330 (14%)

Query: 18  RQNWLQNLEIERGLS--KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            +N L +   +  LS  K ++++Y    +     +            IR       + FI
Sbjct: 65  LENLLNSWWQQHQLSIRKTSVKAYGKILKYIFSNMNVDVL-------IRNTDTKFFQDFI 117

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-------PRA 128
           +            K+  S +     Y +   +  E+ I  ++ +K   +         + 
Sbjct: 118 NDL---PHSWEYKKKFKSVLNMSFTYAQDMGMIDENPINRVKVVKPPLTKENFENIESKY 174

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L EK+   L++         + +    +  +   +Y  GLR  EA+SLT  + + ++  +
Sbjct: 175 LEEKEVYQLLNYYY------STFQSVHHGRLAEFMYLTGLRAGEAISLTINDYVKNEHAI 228

Query: 189 RIQGKGDKI-----------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            + G  D                   R V L     K I E                LF 
Sbjct: 229 LVNGTLDYSNGYKNATKELPKTLASFRKVELSNRAVKIIEELILEREIKFKEQTN-YLFV 287

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLG---LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           G  GKP+    F   +++    LG   +  + ++H  RHS  + L      +++I   +G
Sbjct: 288 GKTGKPIQVNSFNASLKKANESLGKNKINKTISSHIFRHSHISLLAELNVPVKAIMERVG 347

Query: 289 HFRLSTT-QIYTNVNSKNGGDWMMEIYDQT 317
           H    TT +IYT+V  K     ++E  ++ 
Sbjct: 348 HVDTETTLKIYTHVT-KKAKTNLVEALNKY 376


>gi|224582682|ref|YP_002636480.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224467209|gb|ACN45039.1| probable bacteriophage integrase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 308

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 94/241 (39%), Gaps = 33/241 (13%)

Query: 74  FISKRRTQKIGDRSLKR---SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           + S++  +     ++      +SG+  F +  +  + T  + + NMR    +      L 
Sbjct: 77  YFSEKWKKGASPVTINLEQSYMSGV--FSELARLGEWTAPNPLENMRKFTIAEKEMAWLT 134

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            +Q   L+ +    +           + I+ +    G R  EA++LT   +   + T  +
Sbjct: 135 HEQITELLYDCKRQSP--------LLALIVKICLSTGARWREAVNLTRSQVTKYRITF-V 185

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           + KG K R +P+   + + I+       F                   +   FQ      
Sbjct: 186 RTKGKKNRSIPISKELYEEIIALDGFKFF-------------------SDCYFQFLSVME 226

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           +  + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++  ++    +
Sbjct: 227 KTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPEHLETAL 286

Query: 311 M 311
            
Sbjct: 287 R 287


>gi|154000930|gb|ABS57033.1| integrase [uncultured bacterium]
          Length = 158

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/100 (34%), Positives = 50/100 (50%)

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           L     +A   +     F  + +   P    +R   +    FQR  ++     G+    T
Sbjct: 59  LEREYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPAT 118

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            HTLRH FAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 119 PHTLRHPFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|282860291|ref|ZP_06269360.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282586888|gb|EFB92124.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 409

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 53/286 (18%), Positives = 102/286 (35%), Gaps = 23/286 (8%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSLKRSLS 93
           ++ SY         F+      K++     QL+   I  F           + S     +
Sbjct: 133 SMASYHSTRIHLQEFIQKKY--KVSDLAFSQLTENFIHEFQQYFLGECGFQESSFYNVAT 190

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            +K+  +   +  +        ++  K +  LP+AL+      L          E +   
Sbjct: 191 HLKTVCRLAYREGLADFLLFDKVKISKGNKKLPKALDRGAFEKLKTLHFEDLEEEMETA- 249

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
                I       G    + + L   +++ DD+S+L ++    K  +   +  + +AI  
Sbjct: 250 ---RDIFLFACYTGAAYCDLMELDKSHLVRDDESSLWLKFNRHKTGVPCRVKLLPEAIR- 305

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                         LP         +    +Q Y++ LR   G+    T HT RH+FAT 
Sbjct: 306 -LMEKLHSDERETLLPF--------MGYATYQSYLKALRLRAGISFPFTTHTARHTFATL 356

Query: 273 L-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           + L  G  + ++  +LGH  +S T+ Y  V  +     + E +D+ 
Sbjct: 357 ITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQ----KLFEEFDRF 398


>gi|89147488|gb|ABD62604.1| integrase [uncultured bacterium]
          Length = 163

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 47/90 (52%)

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           E+     F  +     P    +R         Q+ ++    + G+    + H LRHSFAT
Sbjct: 73  EWEWFWVFPSSNLSVDPRANAVRRHHAGESAVQKAVKVATGHAGIEKKVSCHVLRHSFAT 132

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           HLL +G D+R++Q +LGH  + TT+IYT+V
Sbjct: 133 HLLESGRDIRTVQELLGHSDVKTTEIYTHV 162


>gi|69247698|ref|ZP_00604457.1| Phage integrase [Enterococcus faecium DO]
 gi|257883247|ref|ZP_05662900.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257891822|ref|ZP_05671475.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|258616941|ref|ZP_05714711.1| phage integrase family site specific recombinase [Enterococcus
           faecium DO]
 gi|260559279|ref|ZP_05831461.1| phage integrase [Enterococcus faecium C68]
 gi|261207244|ref|ZP_05921932.1| phage integrase [Enterococcus faecium TC 6]
 gi|289567468|ref|ZP_06447824.1| phage integrase [Enterococcus faecium D344SRF]
 gi|293562793|ref|ZP_06677267.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1162]
 gi|294618145|ref|ZP_06697737.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1679]
 gi|314940445|ref|ZP_07847597.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|314942379|ref|ZP_07849225.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|314953889|ref|ZP_07856751.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
 gi|314994453|ref|ZP_07859735.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|314996983|ref|ZP_07861979.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|68194722|gb|EAN09203.1| Phage integrase [Enterococcus faecium DO]
 gi|257818905|gb|EEV46233.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257828182|gb|EEV54808.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|260074639|gb|EEW62959.1| phage integrase [Enterococcus faecium C68]
 gi|260078459|gb|EEW66162.1| phage integrase [Enterococcus faecium TC 6]
 gi|289160740|gb|EFD08684.1| phage integrase [Enterococcus faecium D344SRF]
 gi|291595575|gb|EFF26876.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1679]
 gi|291605230|gb|EFF34690.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1162]
 gi|313588906|gb|EFR67751.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|313591154|gb|EFR69999.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|313594138|gb|EFR72983.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
 gi|313598847|gb|EFR77692.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|313640352|gb|EFS04933.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
          Length = 392

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 51/335 (15%), Positives = 128/335 (38%), Gaps = 59/335 (17%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + W Q     R L++    +Y+    Q  I + +  ++K     +  L+   ++  +   
Sbjct: 66  EQWFQYY---RSLNEQKEITYDKREEQLKIIVRWIGDKK-----LSDLTPECLQELLFTL 117

Query: 79  RTQKIGDRSLKRSLSGIKSF-------LKYLKKRKITTESNILNMRNLKKSNSLP----- 126
           +   +   ++  + + ++S         KY +++ + +E+ + ++R  K   ++      
Sbjct: 118 KECGVNGTNVGYAKNSLQSLIQVLNMIFKYCQRKNLISENPMKSVRMPKYQLTVTDLKEA 177

Query: 127 ------RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                 + L   +  T ++  ++H              + ++L+  G R+SEAL+L P +
Sbjct: 178 INNIEDKFLTVDELRTFLNYGIVHEELPMS-------VLFHVLFYTGCRVSEALALQPGD 230

Query: 181 IMDDQSTLR------IQGKGDKIRIVP---------------LLPSVRKAILEYYDLCPF 219
           I   ++ +       ++GK    RI                 ++  +++ I    ++   
Sbjct: 231 IDFKRNEILFYKQTAVKGKSKDFRIETTKTVSSARRVLVTPLVMEKLQQLIKALGEMRQH 290

Query: 220 DLNLNIQLPLFR----GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
              +  +  LF       RG P        ++++     G+      H  RH+ A+ L++
Sbjct: 291 YRFIIEETYLFVYLDSSKRGVPYRREYVNDHVKRCVNRSGINKPFHTHLARHTMAS-LVA 349

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
                  ++  LGH   +T++IY ++ S      +
Sbjct: 350 EHCSWEVLKDRLGHTDQTTSKIYRHLTSNEKVKPL 384


>gi|323972727|gb|EGB67928.1| phage integrase [Escherichia coli TA007]
          Length = 399

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 114/278 (41%), Gaps = 25/278 (8%)

Query: 37  QSYECDTRQFLIFLAFYTEE----KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           +S++ D ++F  ++     +     +  + I+Q+ +  +     +   Q+    +  R+L
Sbjct: 121 KSWDKDVQRFTQYIEPRLGKIRYCDLRAREIQQVLFDMLEG---RIHGQQYAPSTCNRAL 177

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           + +K+  +Y  ++ +  ++    +  LK++N   R  +  +   ++D     T +  K  
Sbjct: 178 AILKTMGRYALRQDVLEKNEADKIPLLKENNQRTRFFDADEIRRILD---AATQYPNKAA 234

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
                 ++ +L   G R SE L++  ++I     TL I    +       L     +I++
Sbjct: 235 GG----LIAMLLLTGTRKSEMLNVRHEHIDRANRTLFIPYTKNGRSRTVYLSDAALSIID 290

Query: 213 YYDLCPFDLNLNIQLPLF-RGIRGKPLNPGVFQRYIRQLRRYLGLPLS-TTAHTLRHSFA 270
                     +     LF     GKP++    +    ++    G+  +    HT RHS A
Sbjct: 291 AIP------RVGSNPYLFAIKDNGKPISEP--RWAYEKILAQCGIDKNEVCFHTTRHSVA 342

Query: 271 THLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           + L+S+G   L  +++ L H  + +T+ Y  +  +   
Sbjct: 343 SLLVSSGQFSLYDVKAQLAHASIQSTERYAKLTPERMR 380


>gi|306812751|ref|ZP_07446944.1| integrase family protein [Escherichia coli NC101]
 gi|305853514|gb|EFM53953.1| integrase family protein [Escherichia coli NC101]
          Length = 350

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 92/239 (38%), Gaps = 29/239 (12%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + S++  +     ++    S + S F +  +  + +  + + NMR    +      L  +
Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q + L+         + K  D   + ++ +    G R  EA++LT   +   + T  ++ 
Sbjct: 179 QIVELL--------ADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITF-VRT 229

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+   + + I+       F                       FQ      + 
Sbjct: 230 KGKKNRSIPISKELYEEIMALDGFNFF-------------------TDCYFQFLSVMEKT 270

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            + LP     H LRH+F  H + +GG++ ++Q ILGH  +  T  Y ++   +    + 
Sbjct: 271 SIVLPRGQLTHVLRHTFTAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHLETALR 329


>gi|327402602|ref|YP_004343440.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327318110|gb|AEA42602.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 405

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 55/314 (17%), Positives = 113/314 (35%), Gaps = 31/314 (9%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL ++  + ++ L + +  S  TLQ Y    +    F+        +   + +L +  + 
Sbjct: 112 ELFQDHNSQMEQL-LNKDFSPNTLQRYLAAFKHLGNFIQVQY--NCSDIYLNELDHAFVT 168

Query: 73  AFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
            F    +T       S  + +  +K  +          +    N             ++ 
Sbjct: 169 RFEQYLKTVISCQHNSAMKHVKALKKVVNLALANDYIKKDPFANY-----------TISI 217

Query: 132 KQALT--LVDNVLLHTSHETKWIDARN--SAILYLLYGCGLRISEALSLTPQNI---MDD 184
           K+     L    L   + +   I+  +    +       GL  ++  SLTP++I   +D 
Sbjct: 218 KEVKRDCLTQAELDQIASKEISIERLDVIRDLFLFQCYTGLAFADLASLTPEHIQIGVDR 277

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
              L ++           L  + + I+  Y   P  +  N  LP+    +          
Sbjct: 278 HKWLFVERTKTNTDCRIPLFPITEEIVSKYKDHPERIIKNRLLPVPSNQKM--------N 329

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            Y+++L    G+  +   H  RH++AT + L N   + ++  +LGH ++ TTQIY  V  
Sbjct: 330 AYLKELGAICGITKNIHTHLARHTYATTVTLGNNIPIETVSKLLGHKKIQTTQIYAKVLE 389

Query: 304 KNGGDWMMEIYDQT 317
                 M  + ++ 
Sbjct: 390 TKVSKDMEGLREKF 403


>gi|320450761|ref|YP_004202857.1| phage integrase [Thermus scotoductus SA-01]
 gi|320150930|gb|ADW22308.1| phage integrase [Thermus scotoductus SA-01]
          Length = 367

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 110/303 (36%), Gaps = 38/303 (12%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G  + TL  Y   TR           +++    +  L+   + A       +     ++ 
Sbjct: 76  GRRENTLNEYARYTR--------LVVDRLGSPRLDHLTPERLEALFRALAQEGYSRSTVT 127

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQALTLVDNVLLHTSHE 148
              + + + L+   +     E+ +      +     + R ++E++   L++ +  H  + 
Sbjct: 128 HVRNFLHAALERAVRYGRLHENPVDRTVLPRFPQREVGREISEEELRRLLETLKTHRLYP 187

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----------------- 191
                       YLL   GLR  E L L   +I  ++  L I+                 
Sbjct: 188 A----------FYLLAAYGLRRGEVLGLLWSDIDFEKDLLHIRRALTVNTRTGQPILGPT 237

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
                 R++PL    ++ +L + +    +     Q  +F    G P++P   +R   ++ 
Sbjct: 238 KTSGSNRVLPLTEEAKEVLLAHRERMVLEELYQPQGLVFPSTTGNPVHPSNLRRTWLRVL 297

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST-TQIYTNVNSKNGGDWM 310
           +  G+P     H LR +F T ++    + +   ++ GH  L+   Q YT V+ ++    +
Sbjct: 298 KKAGVPR-ARLHDLRGTFITRVVRETKNPKLAAALAGHKSLAVALQHYTRVSEEDLKQTL 356

Query: 311 MEI 313
             +
Sbjct: 357 RHL 359


>gi|315173579|gb|EFU17596.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1346]
          Length = 378

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 62/330 (18%), Positives = 117/330 (35%), Gaps = 48/330 (14%)

Query: 18  RQNWLQNLEIERGLS--KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            +N L +   +  LS  K ++++Y    +     +            IR       + FI
Sbjct: 65  LENLLNSWWQQHQLSIRKTSVKAYGKILKYIFSNMNVDVL-------IRNTDTKFFQDFI 117

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-------PRA 128
           +            K+  S +     Y +   +  E+ I  ++ +K   +         + 
Sbjct: 118 NDL---PHSWEYKKKFKSVLNMSFTYAQDMGMIDENPINRVKVVKPPLTKENFENIESKY 174

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L EK+   L++         + +    +  +   +Y  GLR  EA+SLT  + + ++  +
Sbjct: 175 LEEKEVYQLLNYYY------STFQSVHHGRLAEFMYLTGLRAGEAISLTINDYVKNEHAI 228

Query: 189 RIQGKGDKI-----------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            + G  D                   R V L     K I E                LF 
Sbjct: 229 LVNGTLDYSSGYKNATKELPKTLASFRKVELSNRAVKIIEELILEREIKFKEQTN-YLFV 287

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLG---LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           G  GKP+    F   +++    LG   +  + ++H  RHS  + L      +++I   +G
Sbjct: 288 GKTGKPIQVNSFNASLKKANESLGKNKINKTISSHIFRHSHISLLAELNVPVKAIMERVG 347

Query: 289 HFRLSTT-QIYTNVNSKNGGDWMMEIYDQT 317
           H    TT +IYT+V  K     ++E  ++ 
Sbjct: 348 HVDTETTLKIYTHVT-KKAKTNLVEALNKY 376


>gi|291513999|emb|CBK63209.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 390

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 61/316 (19%), Positives = 108/316 (34%), Gaps = 44/316 (13%)

Query: 16  KERQNWLQNL-EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           K++ N+L+      +   K  ++  E   R+F  FLA       T     Q++   +  F
Sbjct: 103 KQKINFLEFFDAYVKNYKKKDIRMMEGCLRRFRGFLAESYPSMQTNIKPDQMTKEMMIKF 162

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFL-------KYLKKRKITTESNILNMRNLKKSNSLPR 127
           +   +    G+        G + F        KY   + I  ++    +  +    +L +
Sbjct: 163 VDYLQQHSFGE--------GARGFFQRFKKVIKYAIDQDILLKNPCTGVPCVVDDTALRK 214

Query: 128 -ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             L+ ++   L        ++          A L+ LY  GLR  + + L   N+     
Sbjct: 215 DVLSLEEIAQL--------ANTPYQNMDVRRAFLFCLYA-GLRYCDVVDLKYSNVDYANK 265

Query: 187 TLRI--QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           T+R              +   +   +L+     P        LP   G            
Sbjct: 266 TIRFDQNKTTGHSTHSIVTIPLSNTLLKLIGERPEKDGPIFTLPSHTGCL---------- 315

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           + +R      G+    T H  RHSFA +LL     D++++ S+LGH  L  T+ YT    
Sbjct: 316 KALRIWVARAGIEKHITWHCARHSFAVNLLGECHTDIKTVASLLGHSGLKHTEKYTR--- 372

Query: 304 KNGGDWMMEIYDQTHP 319
               D + E      P
Sbjct: 373 --AVDSLKEKAVNALP 386


>gi|217964693|ref|YP_002350371.1| integrase [Listeria monocytogenes HCC23]
 gi|217333963|gb|ACK39757.1| integrase [Listeria monocytogenes HCC23]
 gi|307570746|emb|CAR83925.1| phage integrase family protein [Listeria monocytogenes L99]
          Length = 384

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 115/292 (39%), Gaps = 37/292 (12%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T+  Y+    QF+ +     +EKI + +I  + Y   + FI+          ++   
Sbjct: 76  SQSTINLYDLAYNQFVDYF----DEKIKLNSIDAVQY---QQFINHLSVD-YAISTVDTR 127

Query: 92  LSGIKSFLKYLKKRKITTESNIL--NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
              I++            ++  +  ++     + +  + +   +   L++        E 
Sbjct: 128 HRKIRAIFNKAVHLGYMKKNPAIGAHISGHDVAKTKAQFMETDKVHLLLE--------EL 179

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-------------KGDK 196
               + + A+++L    G+R  E ++LT ++I   + ++ +               K  K
Sbjct: 180 ANFHSISRAVIFLAVQTGMRFEEIIALTKKDINFTKRSISVNKAWDYKYTNSFVDTKTKK 239

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLN----LNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
            R++ +  S  + +  Y +     +      N  + LF     KP++     + ++++  
Sbjct: 240 SRVIYIDNSTIQYLQSYINWHTDYIKEHAIKNPLMLLFITYHNKPVDNASCNKALKKICT 299

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
            +      T H LRH+     +  G D+  +   LGH  ++TT + Y++++S
Sbjct: 300 TIN-SEPVTLHKLRHTHTGLCVEAGMDIIYVADRLGHDDINTTLKYYSHLSS 350


>gi|161506594|ref|YP_001573715.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189348885|ref|YP_001942080.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
 gi|160346832|gb|ABX19915.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189339023|dbj|BAG48090.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
 gi|325522069|gb|EGD00741.1| tyrosine recombinase [Burkholderia sp. TJI49]
          Length = 770

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 63/307 (20%), Positives = 114/307 (37%), Gaps = 50/307 (16%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           I    + +      R F+     +     + +R L+ +    ++L  ++    +    + 
Sbjct: 357 IGRSRVERFDPA-WRPFVGPLSER--SRDTARRILNAM---GEWLVAQQYLRVNPFAGLP 410

Query: 118 NLKKSNSLP-----RALNEKQALTLVDNVL------------LHTSHETKWIDARNSAIL 160
               + S+P     R+L   Q   ++  VL            L      +  +AR++ +L
Sbjct: 411 A---APSVPIDATGRSLTRAQWQYVLQTVLRPTSAFDGGDSQLANRSANQAANARDAFLL 467

Query: 161 YLLYGCGLRISEALSLT--------PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
              Y  GLR +E  + T            +DD  +L++ GKG + R VP+   +  A+  
Sbjct: 468 LFAYVTGLRRAEIAAATTGALTRTALDGALDDAWSLKVMGKGRRARTVPMPRRLIDALRA 527

Query: 213 YYDLCPFDLNLN---IQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLP----------- 257
                P  L L       PL    + G+ L+P V  R  + +                  
Sbjct: 528 QLRARPIPLTLETAPADTPLIANLVTGEALHPDVVGRLYKGIFARAADQLAATYPNAAAD 587

Query: 258 -LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + H LRH+FA H L  G D+R +Q +LGH  L TT +YT  ++      +  +++ 
Sbjct: 588 LRRASTHWLRHTFANHGLDAGADIRDMQELLGHASLGTTTLYTKADAVRQFQSVEALFNA 647

Query: 317 THPSITQ 323
                  
Sbjct: 648 ALDRADP 654


>gi|306831022|ref|ZP_07464184.1| phage integrase family site-specific recombinase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304427045|gb|EFM30155.1| phage integrase family site-specific recombinase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 385

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 53/280 (18%), Positives = 100/280 (35%), Gaps = 38/280 (13%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           I +++  + + FI+    +    R++K+  S       +  K K+  E+ + ++   K+ 
Sbjct: 110 ISKITPWQCQEFIT---EKGKTFRNIKQVKSYANQVFNFAVKMKLIAENPMRDITLPKRD 166

Query: 123 NSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           +       N  +    +  V    S++       + A+  LL   GLR  E  SL   +I
Sbjct: 167 HKQSDNFFNVDELHEFLAIVKAEESYK-------DYALFRLLAYSGLRKGELYSLRWSDI 219

Query: 182 MDDQSTL-------RIQGK--------GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
             D+  L       RI+GK           +R +PL       + E+      +      
Sbjct: 220 DFDKQILSITKNLGRIRGKAVEKRTKNRFSVRQIPLDDETISILREWKVRSKKEKGQLSV 279

Query: 227 LPLFRGI----------RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
            PL              + +PL        ++++     L    + H  RH+ AT ++  
Sbjct: 280 TPLIENDYIFTFVDRDGKIQPLYQDYINYNLKRIIDKHNL-KKISPHGFRHTHATLMIEI 338

Query: 277 GGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYD 315
           G D  +    LGH     T   Y++V    G   + +  D
Sbjct: 339 GVDPVNAARRLGHASSQMTLDTYSHVTEAGGERTIKKFAD 378


>gi|71904526|ref|YP_281329.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes phage 6180.4]
 gi|94991460|ref|YP_599560.1| DNA integration/recombination/inversion protein [Streptococcus
           phage 10270.5]
 gi|71803621|gb|AAX72974.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes phage 6180.4]
 gi|94544968|gb|ABF35016.1| DNA integration/recombination/inversion protein [Streptococcus
           phage 10270.5]
          Length = 387

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 86/233 (36%), Gaps = 21/233 (9%)

Query: 96  KSFLKYLKKRKITTESNILNMRNLKK---SNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           +  L+Y    ++   +   ++   +K        +  + ++    ++   L     + + 
Sbjct: 148 RRILQYGVTMQVIEHNPARDVIIPRKQNNKEHKVKFFSNQELKQFLNY--LDDLDLSSYE 205

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL--------- 203
           +  +  +   L   G RI E L+L   +I   + T+++    ++ +              
Sbjct: 206 NFFDYVLYKTLLATGCRIGEVLALEWSDIDLKKGTIKVSKTLNRYQETNTPKSKAGLRDI 265

Query: 204 --PSVRKAILEYYDLCPFDLNLN---IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
                   +L+ Y      L+ +    +  +F     K     + ++ +++  +  G+P 
Sbjct: 266 EIDRATVLLLKQYKNRQQVLSWDLGRSETIVFTPFTTKYAYACLLRKRLQKHFKAAGVP- 324

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
             + H  RH+ AT +L  G + + +Q  LGH  +S T   Y +   +     +
Sbjct: 325 DISFHGFRHTHATIMLYAGIEAKDLQYRLGHSNISMTLNTYVHATKEGAKKAV 377


>gi|317477477|ref|ZP_07936703.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906341|gb|EFV28069.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 586

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 49/298 (16%), Positives = 110/298 (36%), Gaps = 30/298 (10%)

Query: 31  LSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSL 88
            S +T+  Y+   ++    + ++Y +E IT     +L+   IRAF    +T+  +   ++
Sbjct: 129 YSPVTINRYKNVVKKLQRLIPSYYGKEDITFH---ELTPEFIRAFDIYLKTEGGLCRNTI 185

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R +   K F      ++   ++     + +++  + P  L   +   ++         E
Sbjct: 186 VRYMKCFKKFTNMALAKEWMRKNPFYGYK-MEQDETDPVFLTYDELQAVMKKKFTIPRLE 244

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSL--------TPQNIMDDQSTLRIQGKGDKIRIV 200
                     I       GL  S+  +L           +    +  ++++ +     I 
Sbjct: 245 LV------RDIFVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRVKLEHRRKASSIS 298

Query: 201 PLLP-SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
            +    V  AILE Y   P  +     LP+    +           Y++++  + G+  +
Sbjct: 299 NIPLLPVPLAILEKYREHPICVKKGCCLPVMCNQKM--------NSYLKEIADFCGIKKN 350

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQ 316
            T H+ RH+F+T +   G     I    GH       +IY ++ +K+    +   + +
Sbjct: 351 LTTHSARHTFSTIMCRRGVPREDIIIATGHEDTQMLDKIYAHLTAKDKSRKVTTAFKK 408


>gi|222080268|ref|YP_002540132.1| integrase/recombinase [Agrobacterium vitis S4]
 gi|221738913|gb|ACM39692.1| integrase/recombinase [Agrobacterium vitis S4]
          Length = 325

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 108/291 (37%), Gaps = 25/291 (8%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSF 98
           YE +      F+AF   +   ++TI ++S     A+I   + + +   +L+   S ++  
Sbjct: 25  YEVEEAVLYRFVAFTRNQFPGLETITEVSAN---AWIEAAQKRAVTPATLQGLTSPVRHL 81

Query: 99  LKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALTLV-DNVLLHTSHETKWIDARN 156
            ++L    +         +R    +  +P   ++++           H   +        
Sbjct: 82  ARWLILHDVAAYVLPTGVLRRP--AAYIPHIYSDEELAAFFAQTDRCHYCSDVPLRHLVM 139

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD 215
             +   +Y CGLR SEA  L  +++      L I+  KG K R +P+   +R  +  Y  
Sbjct: 140 PVLFRTIYACGLRCSEARLLRVEDVDLATGVLLIRDAKGGKDRQIPVSEPIRVRLAHY-- 197

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-----TAHTLRHSFA 270
                 +       F G RG+ L         R+      +           H  RHSFA
Sbjct: 198 --HAQFDWMGHEWFFPGRRGQRLRLSNVYNNFRRFLWQARISHGGRGHGPRVHDFRHSFA 255

Query: 271 THLLSN--------GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            H L N        G  L  +Q+ +GH+ ++ T  Y  + +++    +  +
Sbjct: 256 VHNLRNWFATGKDVGAMLPILQTYMGHYSIADTAYYLRLTAESYPHIVRRL 306


>gi|218259428|ref|ZP_03475166.1| hypothetical protein PRABACTJOHN_00823 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225121|gb|EEC97771.1| hypothetical protein PRABACTJOHN_00823 [Parabacteroides johnsonii
           DSM 18315]
          Length = 408

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/307 (16%), Positives = 117/307 (38%), Gaps = 29/307 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAF 74
           +  + +L+ +++    +  T   YE   ++ + F+ F Y+   I I+ I  +   +   +
Sbjct: 115 QHNEQYLEKVKM--NTADKTYSRYELTKKRLVEFMKFKYSISDILIKDINVVFIEDFLLY 172

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I  +        +  + +   ++ + + K   + T     + R ++   +    L  ++ 
Sbjct: 173 I--KNNYGCSHNTAMKFVQRFRTVVNFAKNTGLVTADPFGSYR-VRFERTDRDYLTMEEI 229

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRI 190
            T+ ++        +K ++      ++  Y   L   +   L  ++       +   +R 
Sbjct: 230 TTIYNH-----EFSSKRLEQVRDLFIFSCY-TALSYIDVCELRQEDIRIGFDGNLWIIRK 283

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           + K +    V LL   +  + +Y +             L  G     ++      Y++++
Sbjct: 284 RHKTNVTSTVRLLDIPKAILEKYKEQ------------LPNGKILPIISNQKMNDYLKEI 331

Query: 251 RRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                +  + T H  RHS AT  LL+NG  + ++  ILGH  + TTQIY  +        
Sbjct: 332 AAICRIEKTLTYHVARHSCATSVLLANGVPIETVSKILGHTNIRTTQIYARITDLKVSSD 391

Query: 310 MMEIYDQ 316
           M  +  +
Sbjct: 392 MEMLAQK 398


>gi|325848894|ref|ZP_08170404.1| site-specific recombinase, phage integrase family [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480538|gb|EGC83600.1| site-specific recombinase, phage integrase family [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 353

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 95/278 (34%), Gaps = 34/278 (12%)

Query: 45  QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK 104
             L        ++IT+Q  ++ + + ++ ++  +       R +            +  K
Sbjct: 87  HILPVFGQTKIQEITVQDCQKFALS-LKDYVKGKEYFGYAKRII-----------DFAIK 134

Query: 105 RKITTESNILNMRNL--KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
              T ++   N+     KK       L   +  TL+D             +     +  L
Sbjct: 135 MNYTKKNPFNNVILPEFKKGKKQINFLTIVEVNTLLDYYK---------NNQYWYTLFRL 185

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK--------AILEYY 214
           +   GLR  E L+LT  +I     TL +           ++ S  K         + +  
Sbjct: 186 MCYTGLRRGEILALTWDDIDFKNKTLTVNKTLSIGEYKKIVLSSPKTESSIRTIDLDDKT 245

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            L    L +  +  L    +    +        + +  +   +      H LRH+ A+ L
Sbjct: 246 ILELQKLKIQSKYKLIFPNKKGKYSRLSNIADKLNKAIKETNI-KKIRVHDLRHTHASLL 304

Query: 274 LSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
            ++G  ++ +Q+ LGH  + TT  IYT+V        +
Sbjct: 305 FASGASIKYVQTRLGHADVKTTLNIYTHVTKDTKEKDL 342


>gi|315146060|gb|EFT90076.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2141]
          Length = 280

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 53/283 (18%), Positives = 101/283 (35%), Gaps = 39/283 (13%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           IR       + FI+            K+  S +     Y +   +  E+ I  ++ +K  
Sbjct: 7   IRNTDTKFFQDFINDL---PHSWEYKKKFKSVLNMSFTYAQDMGMIDENPINRVKVVKPP 63

Query: 123 NSL-------PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
            +         + L E++   L+          + +    +  +   +Y  GLR  EA+S
Sbjct: 64  LTKENFENIESKYLEEREVYQLLSYYY------STFQSVHHGRLAEFMYLTGLRAGEAIS 117

Query: 176 LTPQNIMDDQSTLRIQGKGDKI-----------------RIVPLLPSVRKAILEYYDLCP 218
           LT  + + ++  + + G  D                   R V L     + I E      
Sbjct: 118 LTINDYVKNEHAILVNGTLDYSNGYKNATKELPKTLASFRKVELSNRAVEIIEELILERE 177

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG---LPLSTTAHTLRHSFATHLLS 275
                     LF G  G P+    F   +++    LG   +  + ++H  RHS  + L  
Sbjct: 178 IKFKEQTN-YLFVGKTGNPIQVNSFNASLKKANESLGKNKINKTISSHIFRHSHISLLAE 236

Query: 276 NGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQT 317
               +++I   +GH    TT +IYT+V  K   + ++E  ++ 
Sbjct: 237 LNVPVKAIMERVGHVDTETTLKIYTHVTKKAKTN-LVEALNKY 278


>gi|308271068|emb|CBX27678.1| Integrase/recombinase [uncultured Desulfobacterium sp.]
          Length = 192

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 74/176 (42%), Gaps = 37/176 (21%)

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLL----PSVRKAILEYYDL 216
           +LYGCGLR+ E + L    +  D   L +  GK  K R VPL     P +R+ +    DL
Sbjct: 1   MLYGCGLRLFECIGLRVHCMNFDAGILTVHDGKRQKDRTVPLPETMLPELRRHLETLKDL 60

Query: 217 CPFDLNLN---------------------IQLPLFR-----------GIRGKPLNPGVFQ 244
              DL                        I    F            G R   L+  + Q
Sbjct: 61  HKRDLEKKYAGVFLVNALELKYKNAAKDFIWQWFFPAMQLTYEKKSGGYRRYHLHESLVQ 120

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           + I++      +    +AHT  HSFA+HLL    D+R+IQ +LGH  + TT IYT+
Sbjct: 121 KAIKKAVDKSRITKRASAHTFHHSFASHLLQANYDIRTIQELLGHSDVRTTMIYTH 176


>gi|307314516|ref|ZP_07594119.1| integrase family protein [Escherichia coli W]
 gi|306905939|gb|EFN36461.1| integrase family protein [Escherichia coli W]
 gi|315060085|gb|ADT74412.1| integrase family protein [Escherichia coli W]
 gi|323379357|gb|ADX51625.1| integrase family protein [Escherichia coli KO11]
          Length = 350

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 93/239 (38%), Gaps = 29/239 (12%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + S++  +     ++    S + S F +  +  + +  + + NMR    +      L  +
Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q + L+         + K  D   + ++ +    G R  EA++LT   +   + T  ++ 
Sbjct: 179 QIVELL--------ADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITF-VRT 229

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+   + + I+       F                       FQ      + 
Sbjct: 230 KGKKNRSIPISKELYEEIMALDGFNFF-------------------TDCYFQFLSVMEKT 270

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++   +    + 
Sbjct: 271 SIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHLETALR 329


>gi|239917481|ref|YP_002957039.1| site-specific recombinase, integrase family [Micrococcus luteus
           NCTC 2665]
 gi|281414028|ref|ZP_06245770.1| site-specific recombinase, integrase family protein [Micrococcus
           luteus NCTC 2665]
 gi|239838688|gb|ACS30485.1| site-specific recombinase, integrase family [Micrococcus luteus
           NCTC 2665]
          Length = 396

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 53/337 (15%), Positives = 111/337 (32%), Gaps = 62/337 (18%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLS--KLTLQSYECDT-RQFLIFLAFYTEEKI 58
               +P +  F        ++++    RGL     TL  YE +  R FL  L     + I
Sbjct: 65  SAPGMPTLAEF-----FPRYIEH----RGLRCTPGTLAGYEAEAARTFLPRLGELPVDMI 115

Query: 59  TIQTIRQLSYTEIRAFISKRRT-----------------QKIGDRSLKRSLSGIKSFLKY 101
             +T+ +    +++   ++ R                    +  ++++ + + + + L  
Sbjct: 116 DRRTVAEWIRWQLQQPTARWRAAAARAAAATPPRPEPPLATVSPKTVRNAHALLSAVLGL 175

Query: 102 LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
             +  I   +                  ++              +     I      +L 
Sbjct: 176 AVQEGILPANPARGADLP----------DDDVEEERGIFSRAEWARFYAAISESYQPLLI 225

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK---------------IRIVPLLPSV 206
           +L   G R  EA +L  +++    S + ++    K                R + L    
Sbjct: 226 VLLVTGARWGEATALQVRDLDVAASVIHVRRAWKKGKEGAVLGVPKTARGRRTIMLPDWA 285

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF-QRYIRQLRRYLGLPLSTTAHTL 265
            + +       P          L     G  ++   F +R+ +      G+    T H+L
Sbjct: 286 VETLE------PLAAGRAADEFLLTAPGGGVIHRTNFVERHWKPALAAAGIAKHLTPHSL 339

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           RH+FA+  L +G   + +Q  LGH  L TT ++Y ++
Sbjct: 340 RHTFASWALMDGVPAQVVQHRLGHESLQTTSRVYAHL 376


>gi|154000908|gb|ABS57022.1| integrase [uncultured bacterium]
 gi|154000918|gb|ABS57027.1| integrase [uncultured bacterium]
 gi|188526759|gb|ACD62261.1| IntI1 integrase [uncultured bacterium]
 gi|188526784|gb|ACD62273.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 50/94 (53%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 65  RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEEAGVAKPATPHTLRH 124

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 125 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|89147632|gb|ABD62675.1| integrase [uncultured bacterium]
          Length = 163

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 54/112 (48%)

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           I G G+      L      A  E+     F        P  +  R   L+    Q+ +++
Sbjct: 51  IAGCGEVYLPYALARKYPTAPKEWGWQYVFPAANRSIDPRSQKERRHHLSDQAVQKAMKK 110

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             R   +    + HTLRHSFATHLL NG D+R++Q +LGH  + TT IYT+V
Sbjct: 111 AMRTAKIFKHGSCHTLRHSFATHLLENGYDIRTVQELLGHKDVRTTMIYTHV 162


>gi|16762232|ref|NP_457849.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29143721|ref|NP_807063.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|25301804|pir||AI0924 probable bacteriophage integrase [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16504536|emb|CAD09419.1| probable bacteriophage integrase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139356|gb|AAO70923.1| probable bacteriophage integrase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 350

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 93/239 (38%), Gaps = 29/239 (12%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + S++  +     ++    S + S F +  +  + +  + + NMR    +      L  +
Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q + L+         + K  D   + ++ +    G R  EA++LT   +   + T  ++ 
Sbjct: 179 QIVELL--------ADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITF-VRT 229

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+   + + I+       F                       FQ      + 
Sbjct: 230 KGKKNRSIPISKELYEEIMALDGFNFF-------------------TDCYFQFLSVMEKT 270

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++   +    + 
Sbjct: 271 SIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHLETALR 329


>gi|307544254|ref|YP_003896733.1| site-specific recombinase, phage integrase family [Halomonas
           elongata DSM 2581]
 gi|307216278|emb|CBV41548.1| site-specific recombinase, phage integrase family [Halomonas
           elongata DSM 2581]
          Length = 451

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 52/317 (16%), Positives = 118/317 (37%), Gaps = 36/317 (11%)

Query: 38  SYECDTRQFLIFLAFYTEEKITI--QTIRQLSYTEIRAFISKRR--TQKIGDRSLKRSLS 93
           +Y+   +     L    ++      + +  L+  ++  + + +    +     +LKR+  
Sbjct: 120 AYQNRLKDGAATLRRIKQDFPGWLDKPMGSLTRADVERWQADQEAVDKPRAFGTLKRNYD 179

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSN---------SLPRALNEKQALTLVDNVLLH 144
            +   L +  +RK+     +  ++  K +          +  R L  ++   L   +  +
Sbjct: 180 ALCGLLAHAAERKVIPAHPLKGVKLQKPALNEEELAEQGAERRYLEPEEVEALFTGLEAY 239

Query: 145 T-----------SHETKWIDARNSAI--------LYLLYGCGLRISEALSLTPQNIMDDQ 185
                       +H   ++   + A         +  +Y  G R  +   L  +++    
Sbjct: 240 QDQRRQQRRNSRAHGKPYLSDLDGAAYVDHVKPWILTMYFTGFRPGDLFGLRWEHVNLTF 299

Query: 186 STLR-IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVF 243
           +T+R +  K    R  P    +  A ++                +F   I GK ++    
Sbjct: 300 ATIRKVIEKTAHKRPEPQTFPLSSAAVDVLKTWHKQQGEPKAGLVFPSPITGKRMSATAM 359

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN 302
           Q+    +R   GLP     +TLRH+FA+ L+ +G DL ++  ++ H  + TT   Y ++ 
Sbjct: 360 QKPWAAVRGLGGLPEDRQLYTLRHNFASQLVMSGTDLLTVSKLMAHADIQTTIAHYAHLA 419

Query: 303 SKNGGDWMMEIYDQTHP 319
             +  D + E++ Q  P
Sbjct: 420 PDHKRDAV-EVFAQLAP 435


>gi|258508081|ref|YP_003170832.1| phage-related integrase [Lactobacillus rhamnosus GG]
 gi|257148008|emb|CAR86981.1| Phage-related integrase [Lactobacillus rhamnosus GG]
 gi|259649403|dbj|BAI41565.1| phage integrase [Lactobacillus rhamnosus GG]
          Length = 394

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 57/335 (17%), Positives = 115/335 (34%), Gaps = 53/335 (15%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +      W+  L++   + + ++  Y  + ++++I        KI    + + +  E + 
Sbjct: 70  MADYLNQWITKLKV--NVKEGSMIIYRYNLKKYII-------PKIGDIRLAKYTLKEHQE 120

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN---LKKSNSLPRALN 130
           FIS      +   ++K     + + LK        T++  + +      K ++       
Sbjct: 121 FISSLFNDGLSLNTVKLINGTLHNALKKAVAIGYITKNPTVGVEFSAYAKDNSKKLHFWT 180

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           + Q  + ++        E  W+          L  CGLR+ EA++L   +I  +++TL +
Sbjct: 181 KDQVGSFIEA--AEEDKEPMWLS-----FFVTLIDCGLRVGEAMALRWSDIDFNKNTLSV 233

Query: 191 QGKG---------------------DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--- 226
                                       R   +   V   + + Y+      N+      
Sbjct: 234 NATRIYRAETGSNAGKIALDRPKTLSSKRTEYMTARVNDLLQQQYERHFSHGNVQGFRFS 293

Query: 227 -----LPLFR----GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
                  +F        G+PL          ++    GLP     H LRH+ A  +   G
Sbjct: 294 TSHNNDFVFTYSSDAKFGQPLRSRATTGAFNRITNRAGLP-HIRIHDLRHTHAVLMREAG 352

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             L  I+  LGH  +STTQIY  ++     +   +
Sbjct: 353 LSLDDIKDDLGHKDISTTQIYAEISPAKKKENHQQ 387


>gi|282600876|ref|ZP_05979981.2| putative tyrosine recombinase XerD [Subdoligranulum variabile DSM
           15176]
 gi|282571222|gb|EFB76757.1| putative tyrosine recombinase XerD [Subdoligranulum variabile DSM
           15176]
          Length = 322

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 102/266 (38%), Gaps = 18/266 (6%)

Query: 51  AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE 110
           A+   E +  + +  L   + +  I+     K      ++         +Y  ++ I   
Sbjct: 66  AYRKAEPLQGRRMMDLKTEDYQEIITDMAAHKASRSLCEKQRQLFSQLCQYAMRQDIINT 125

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
           +    +     S    R L+E +   +          + K +      I  +L   G+R+
Sbjct: 126 NYAQGLVLPSASAPQTRVLSEAEVEAIWSM------ADDKRLGETAR-IALVLIYTGMRL 178

Query: 171 SEALSLTPQNIMDDQSTLR--IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
           +E L+    N+  +   L    + +  + R++PL   V+  I E+       LN N    
Sbjct: 179 NELLTARRTNVHLEAGYLVGGEKTEAGRDRVIPLHTDVQPFIREW-------LNGNDTDF 231

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           L     G P +    ++    L + L +      HT RH+ AT ++++G     ++ ILG
Sbjct: 232 LIPSKYGIPRDHNNVRKSFGSLMKKLEIQ-GVKPHTCRHTAATKMMASGLAPEVVKQILG 290

Query: 289 HFRLSTT-QIYTNVNSKNGGDWMMEI 313
           H  ++TT  IYT+ +     + M  I
Sbjct: 291 HADITTTLNIYTHPDVSLLVNGMATI 316


>gi|83313141|ref|YP_423405.1| integrase [Magnetospirillum magneticum AMB-1]
 gi|82947982|dbj|BAE52846.1| Integrase [Magnetospirillum magneticum AMB-1]
          Length = 381

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 102/263 (38%), Gaps = 21/263 (7%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           +  +    ++  +I A  + R  Q    R   +++  + +F       K    S+  N +
Sbjct: 133 LGSRKPSTITKADILA--AYRDIQAKSGRQANQAIIILSTFYNRTTDGKFNPASDFRNDK 190

Query: 118 NLKKSNSLPR--ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +++K     R   L++ Q   L+         ++    + ++A   LL+  G RI E L+
Sbjct: 191 SIRKHRDAEREVVLSQDQVRALL-----ADFDKSPAQQSADAA--RLLFYTGARIGEILA 243

Query: 176 LTPQNIMDDQSTLRIQGKGDKI---RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
           L    +   Q T+ +     K    + + L P  +  +         +  L     +F G
Sbjct: 244 LRWDAVNLTQGTITLAHTMTKEAKAKTLHLSPRAQAILE-----RRQEEALEGAEYVFPG 298

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
             G+  +  V + + +   +  G+      H +R +++T L+++G   +++   +GH   
Sbjct: 299 RDGEA-HQVVIKAFWKAACKRCGIE-GVHIHDIRATYSTILIASGESAKAVGKTMGHADT 356

Query: 293 STTQIYTNVNSKNGGDWMMEIYD 315
            TT  Y  +      D   ++ D
Sbjct: 357 KTTMRYERIAQDRAKDIASKVDD 379


>gi|169350275|ref|ZP_02867213.1| hypothetical protein CLOSPI_01019 [Clostridium spiroforme DSM 1552]
 gi|169293058|gb|EDS75191.1| hypothetical protein CLOSPI_01019 [Clostridium spiroforme DSM 1552]
          Length = 317

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 56/293 (19%), Positives = 112/293 (38%), Gaps = 39/293 (13%)

Query: 45  QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLK 103
           ++   +  +  ++     I ++S   + ++ +     K     ++K     +K+ L Y  
Sbjct: 28  KYETIITNHLNKQFNNMNINEISEKIVISYFNDLLNNKIYATSTIKTLRYVLKAILDY-A 86

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           ++K    +N      LKKS  + + L  KQ   L      H  + T         I+  L
Sbjct: 87  QKKYNFNNNSFQYIKLKKSKPVIKILTLKQKKQLEQYCFNHQKNYT-------LVIILSL 139

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQ----------------------GKGDKIRIVP 201
           YG G R+ E   L   ++  +   + I                             RIVP
Sbjct: 140 YG-GFRLGEVAGLKWCDVDFENHCISINRTIERLKTTNSNSKTTLMALDPKTHTSKRIVP 198

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           +   +   +++YY       N   Q  ++      P +P   Q +  ++     L     
Sbjct: 199 MPEFIIDFLIKYYKK---QSNPKKQNYIYTNSIKIP-DPRNIQYHFHKICNT--LEFKCN 252

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
            HTLRH++AT+ + N  D++S+  +LGH  +S T ++Y + + +     + ++
Sbjct: 253 YHTLRHTYATNCVMNDIDIKSLSEMLGHSNVSITLELYVHSSLEFKKSQINKL 305


>gi|331676587|ref|ZP_08377283.1| integrase for prophage [Escherichia coli H591]
 gi|320199038|gb|EFW73635.1| putative bacteriophage integrase [Escherichia coli EC4100B]
 gi|323942719|gb|EGB38884.1| phage integrase [Escherichia coli E482]
 gi|323953492|gb|EGB49358.1| phage integrase [Escherichia coli H252]
 gi|331075276|gb|EGI46574.1| integrase for prophage [Escherichia coli H591]
          Length = 350

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 93/239 (38%), Gaps = 29/239 (12%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + S++  +     ++    S + S F +  +  + +  + + NMR    +      L  +
Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q + L+         + K  D   + ++ +    G R  EA++LT   +   + T  ++ 
Sbjct: 179 QIVELL--------ADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITF-VRT 229

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+   + + I+       F                       FQ      + 
Sbjct: 230 KGKKNRSIPISKELYEEIMALDGFNFF-------------------TDCYFQFLSVMEKT 270

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++   +    + 
Sbjct: 271 SIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHLETALR 329


>gi|170020796|ref|YP_001725750.1| integrase family protein [Escherichia coli ATCC 8739]
 gi|169755724|gb|ACA78423.1| integrase family protein [Escherichia coli ATCC 8739]
          Length = 350

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 93/239 (38%), Gaps = 29/239 (12%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + S++  +     ++    S + S F +  +  + +  + + NMR    +      L  +
Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q + L+         + K  D   + ++ +    G R  EA++LT   +   + T  ++ 
Sbjct: 179 QIVELL--------ADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITF-VRT 229

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+   + + I+       F                       FQ      + 
Sbjct: 230 KGKKNRSIPISKELYEEIMALDGFNFF-------------------TDCYFQFLSVMEKT 270

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++   +    + 
Sbjct: 271 SIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHLETALR 329


>gi|38637706|ref|NP_942680.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527044|gb|AAP85794.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 314

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 56/261 (21%), Positives = 96/261 (36%), Gaps = 17/261 (6%)

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           A +  ++   +      R LS ++ F ++       T+     +       + P   +  
Sbjct: 49  ALMWAQQPSNVQPAHWARRLSIVREFARHRSATDPRTQIPAPGLLPFSPKRARPYLYSSD 108

Query: 133 QALTLVDNVLLHTSH--ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           +   L+   L         +        +  LL   G+R+ EA +L  Q+I    + L I
Sbjct: 109 EIRRLLHAALQIPCRYARDELQPWTYYCLFGLLSVSGMRLGEARNLELQDIDLTAAILTI 168

Query: 191 QG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIR 248
           +G K  K R VP+  S  K + +Y                LF   +G  L+ G   R+  
Sbjct: 169 RGAKLGKSRFVPMHASTCKVLADYIARRKRHWAGRPVSSYLFVSNQGNRLDSGEIHRHFY 228

Query: 249 QLRRYLGL-----PLSTTAHTLRHSFAT----HLLSNGGD----LRSIQSILGHFRLSTT 295
            L R +GL           H +RH FAT        +G D    L  + + LGH  ++ T
Sbjct: 229 ALSRQIGLRGAADSHGPRLHDMRHVFATNTLLRWYRSGQDPERRLPILSAYLGHVHIADT 288

Query: 296 QIYTNVNSKNGGDWMMEIYDQ 316
           Q Y N + +   + M  +  +
Sbjct: 289 QWYLNASPELMREAMRRLEQR 309


>gi|258515433|ref|YP_003191655.1| integrase domain-containing protein SAM domain-containing protein
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779138|gb|ACV63032.1| integrase domain protein SAM domain protein [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 417

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 60/299 (20%), Positives = 120/299 (40%), Gaps = 21/299 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +    + Q L  E+   K T++SY     +FL++L     +K       +++  +IR 
Sbjct: 119 LRENLNTYNQYLR-EQEKRKETIKSYLQVATKFLLYL-----DKNKKSNFSKVTAIDIRE 172

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           FI+     K   RS++   S +K++LK+             + R  +KS  + RA++ + 
Sbjct: 173 FITDL-GAKWSPRSMRIVPSQLKTYLKFAGF--PVNAILFSSFRAPRKSKPV-RAMSFEN 228

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-RIQG 192
              L   +      E    D R+ AI+ +L   G+R  +   L   +I  +   +  IQ 
Sbjct: 229 VEALWKYI------EGDDGDLRSKAIVTILLATGMRPVDITELKLDDINWNNDNIGFIQS 282

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K  +   + L P +  AI+ Y             + L +    + L P V    ++    
Sbjct: 283 KTGEGMNIELFPVMGSAIIRYMTEERPKGTGAKFIFLTKKAPYRGLTPSVCNCILKVALE 342

Query: 253 YLGLPLST----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
            +G+            +R S  + +++ G  +++  + +GH    +  +YT ++ K   
Sbjct: 343 KIGVTFVADGLHCPRAVRRSLVSRMIAKGVPVQNAAAAIGHVDEKSVDLYTELDVKKMR 401


>gi|269955602|ref|YP_003325391.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894]
 gi|269304283|gb|ACZ29833.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894]
          Length = 401

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 54/315 (17%), Positives = 116/315 (36%), Gaps = 42/315 (13%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL++L++   L++ T   YE + RQ ++             T+R+++   +  F+     
Sbjct: 84  WLEDLDLADRLAEGTRALYERNMRQLVMPAFENY-------TLREITVGRVDRFLKTLAK 136

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL--- 137
            K      K++ + +        + +    + +  +  L+K     +AL   +   +   
Sbjct: 137 SK-SHSMAKQAKTVLSLAFGLAVRYEAIGTNPLQGIDRLRKPERTTKALTVAEVRAIRAA 195

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQG--- 192
           +      +       D +  AI+ ++ G   RI E L++  +++      +T+ I G   
Sbjct: 196 LREWRRGSGLPGPKPDGQLEAIVEVMLGTSARIGEVLAIRKRDVNVTTSPATVTISGTIV 255

Query: 193 --------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
                             +R + +     + I         +   + +  LF      PL
Sbjct: 256 TPKGKSAYRQPNPKTQRSVRTMAVPSFTAEVIRARLVRLVHE---DAEHLLFYSRNHTPL 312

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTT-Q 296
            P   +R +R+  +  G+    T H  R + AT +  + G DL     +LGH   S T +
Sbjct: 313 TPANVRRRLREALKSQGIE-GVTPHAFRRTVATTVERAAGADLA--AELLGHTSSSITKE 369

Query: 297 IYT----NVNSKNGG 307
            Y     +V+++   
Sbjct: 370 HYIERDDHVDARTAE 384


>gi|182679580|ref|YP_001833726.1| integrase family protein [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182635463|gb|ACB96237.1| integrase family protein [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 407

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 67/353 (18%), Positives = 136/353 (38%), Gaps = 46/353 (13%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTR-QFLIFLAFYTEEKITI 60
           EG + P+  S  + +    WL+     R L   TL SYE   R   + F+      ++T+
Sbjct: 54  EGTHTPDSASVTVTEAANLWLETGRG-RRLESSTLDSYEQHVRLHLVPFIGRLKLSQLTV 112

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRS--LKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
             IR+L     R   +    +     +  +KR +S + + L   ++R + + + + ++R+
Sbjct: 113 PMIRELEDKLRRGDPAPGAGEGAARSADMIKRIVSSLGAMLGDAQERGLVSRNVVRDLRS 172

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKW----IDARNSAILYLLYGCGLRISEAL 174
            ++ +S  +  +++Q   L   + + T +E K     +  +   +L      GLR SE  
Sbjct: 173 GRRRSSEKKK-DDRQKGKLKVGIDIPTPNEIKAFIGALQGQYRPLLLTATFTGLRASELR 231

Query: 175 SLTPQNIMDDQSTLRIQ------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
            L   ++  ++  L ++              G   R +P+ P V   + E+  L      
Sbjct: 232 GLRWADLDFERRELHVRQRMDKRNVAGPPKSGAGERKIPMPPIVIDTLREWR-LACPKGT 290

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-----GLPLSTTA---------HTLRHS 268
            ++  P   G         + QR +            GL               H LRH 
Sbjct: 291 ADLVFPTGNGRPEHH--ANIAQRGLIPAWIAAGVTVPGLDKEGKPIEAAKYPGLHALRHF 348

Query: 269 FATHLLSNGGD------LRSIQSILGHFRLSTT-QIYTNVNSK-NGGDWMMEI 313
           +A+ L++   D       + +Q  LGH  ++ T   Y+++  + +  D + + 
Sbjct: 349 YASWLINRKADGGLELPPKLVQERLGHSTIAMTLDTYSHLFPRVDDADELAQA 401


>gi|146301452|ref|YP_001196043.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146155870|gb|ABQ06724.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 305

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 61/277 (22%), Positives = 107/277 (38%), Gaps = 33/277 (11%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-------KIGDRSLKRS 91
           Y+    +FL++L     E+  I  I++L+  E   +      +        +  +S+K  
Sbjct: 34  YQNTLIEFLVWL-----EESGISRIQELTSKESIKYFEYLIARPKLRGEGTLSQKSIKFH 88

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETK 150
           L     FL  L + K     N   + + +  N   R  L+ ++  +L  N          
Sbjct: 89  LFVQGLFLLNLMENKEIE--NGYYIPSYEGGNEKARNTLSVEEIKSLYKNAENELE---- 142

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKA 209
                  A+L + YGCGLR SE  +L  +++      + ++ GK  K R VP+  +V   
Sbjct: 143 ------RALLSVAYGCGLRRSEISALDLKDVKLATGMVVVRSGKNSKRREVPMSDTVMGY 196

Query: 210 ILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG----LPLSTTA 262
           + +Y               +   F   +G+          ++++         +    T 
Sbjct: 197 LKKYIQEERSQRLAGKNQTEEAFFINSKGRRSTGENLNDILKKMIEQTKNFELIQKDITL 256

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           H LRHS A HL  N   +  I+  LGH  ++TT IY 
Sbjct: 257 HCLRHSIANHLAENNAGIDFIRRFLGHSDINTTYIYA 293


>gi|148252808|ref|YP_001237393.1| putative phage related integrase [Bradyrhizobium sp. BTAi1]
 gi|146404981|gb|ABQ33487.1| putative phage related integrase [Bradyrhizobium sp. BTAi1]
          Length = 434

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 65/339 (19%), Positives = 119/339 (35%), Gaps = 53/339 (15%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
            + L E  S    +  + +L   E E  L   T+ +Y    R+       +   +I    
Sbjct: 91  KDRLHERQSLTFSEFAERYLSE-EAEPKLKPGTVANYRIAVRR-------HANPEIGKLK 142

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLK--RSLSGIKSFLKYLKKRKITT--ESNILNMRN 118
           + ++S  +    +++  T+     ++   R+L  + S  +Y     I     +    +R 
Sbjct: 143 LHKISNAD----LARLHTKIGKTSTVNANRTLECVSSIFRYAVTCDIVPVGHNPTKGIRA 198

Query: 119 LKKSNSLPRALNEKQALTL---------------VDNVLLHTSHETKW------IDARNS 157
            +++    R LN  +   L               +D     + H  K       ID+  +
Sbjct: 199 FRENRRE-RFLNSDELARLGSAIREAETVGIPYEIDETKPTSKHAPKPENRRTKIDSYTA 257

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           A L LL   G R+ E L L    +  ++  L +       + + L       +       
Sbjct: 258 AALRLLILTGARLREILHLKWDYVDFERGLLLLPDSKTGRKAIVLNVPALAVL------- 310

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
              L+   Q  +F     KP       R  R +     L      H LRH+ A+     G
Sbjct: 311 -SSLDRKGQYVIFSEQEDKP--RADLNRPWRTISARAKLQ-GVRLHDLRHTHASVGAGAG 366

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             L  I  +LGH + STTQ Y +++S    D + +  ++
Sbjct: 367 LGLPIIGKLLGHTQASTTQRYAHLDS----DPLQKASNK 401


>gi|323438828|gb|EGA96566.1| hypothetical protein SAO11_2347 [Staphylococcus aureus O11]
          Length = 409

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 123/346 (35%), Gaps = 37/346 (10%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ++ N+  ++ +         WL++ +   G    T++  + +T      +    + K+ I
Sbjct: 58  LKHNSTKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNTNT----VKNAIDSKVLI 113

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
             I      +I    +K  +       +    S  K   KY     I+    I   +  K
Sbjct: 114 SKITHTYLQDIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAK 173

Query: 121 KSNSLPR----ALNEKQALTLVDNVLLHTSHETKWIDARNS----AILYLLYGCGLRISE 172
             N L       L E +   L+        H+      RN     A++      G+RI E
Sbjct: 174 TRNELQAKRNNYLEESEVKELLQCFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGE 233

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIV------------------------PLLPSVRK 208
            L++   NI  +  TL I G  + +                             +  ++K
Sbjct: 234 LLAIKTDNINIENKTLEIDGTINWVTDTETGAFGVKETTKTSKSYRTIGLTTQSINLLKK 293

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            +LE      ++     +  +F    G P++       I++      +    T HTLRH+
Sbjct: 294 LMLENKKENQWNAKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHT 353

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
             + L   G +L++IQ+ +GH    TT  IYT+V  K   D M ++
Sbjct: 354 HISTLAQLGINLKAIQARVGHSDYKTTLDIYTHVTDKMAQDMMNKL 399


>gi|261208778|ref|ZP_05923215.1| phage integrase [Enterococcus faecium TC 6]
 gi|289565537|ref|ZP_06445984.1| phage integrase [Enterococcus faecium D344SRF]
 gi|294614438|ref|ZP_06694354.1| phage integrase family protein [Enterococcus faecium E1636]
 gi|260077280|gb|EEW65000.1| phage integrase [Enterococcus faecium TC 6]
 gi|289162619|gb|EFD10472.1| phage integrase [Enterococcus faecium D344SRF]
 gi|291592746|gb|EFF24339.1| phage integrase family protein [Enterococcus faecium E1636]
          Length = 400

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 54/305 (17%), Positives = 106/305 (34%), Gaps = 23/305 (7%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ----LSYTEIRAFISKRRTQ 81
             ER +   T ++ +    + + F   +    IT   I      LS TE R    K   +
Sbjct: 84  WYERQVKSQTYENAQFIFEKRMQFFYHFRVRDITSHDIEDWLFELSQTESRNSRKKVNGE 143

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +    + R    +K  L    K  +  ++ + ++ +L   N         +   +++ +
Sbjct: 144 TLSKSYINRIRGHLKIVLDRAVKEGVIAKNPVEDVSSLPSENKKVEFWEHSEFQKVMNEL 203

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
                 + K        +  +L+  G+RI E  +L+  N+  +++T+ I+          
Sbjct: 204 -----KDDKIQTHHRKIVYEMLFYTGIRIGELEALSWSNVDFEKNTITIEKTLIYNTKDD 258

Query: 202 LLPSVRKAILEYYDLC-----------PFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQ 249
              S  K    Y  +             +DL   I    +         P   F  ++++
Sbjct: 259 WYFSPPKTKCAYRTIGLGKKLSLKLRQWYDLQKRIGNFEYVAQLDGTFTPPYSFANWLKE 318

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGD 308
             +  G+      H LRHS    L+       SIQ  LGH  +  T   Y ++ +K+   
Sbjct: 319 AAKKAGV-KPIKLHALRHSHVAFLIEQNIQPLSIQERLGHANIQITLGTYGHLYAKSDQQ 377

Query: 309 WMMEI 313
            +  I
Sbjct: 378 VVSAI 382


>gi|302539285|ref|ZP_07291627.1| integrase [Streptomyces sp. C]
 gi|302448180|gb|EFL19996.1| integrase [Streptomyces sp. C]
          Length = 356

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 63/282 (22%), Positives = 102/282 (36%), Gaps = 36/282 (12%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG--------IKSFLKYLKKRKITTESN 112
           + + ++   ++  +  + R        ++++ +         ++             ES 
Sbjct: 62  RPLWEMEAQDLDRYFGRHRRDSASGTKVRQAAAFAVFFEFLELRHKAGIHAATGFVVESP 121

Query: 113 ILNMRNLK--KSNSLPRALNEKQALTLVDNVLLHTSHETKW-IDARNSAILYLLYGCGLR 169
           +  M   +   S  L     E +  TL            K+   ARN     L    G R
Sbjct: 122 LDEMNRPRGGASARLRIPPPEAEVTTLFSGWRCDMEEARKYAPAARNYTASRLASLIGPR 181

Query: 170 ISEALSLTPQNIMDDQSTL-RI-------QGKGDKIRIVPLLPSVRKAILEY---YDLCP 218
           ISE   L   ++  D     ++       QG+G K R+VPL+   R  +  +        
Sbjct: 182 ISELCLLRIGDVRWDLGRFGKVLLKGKGSQGRGKKERLVPLINGARDLLEWWVTGPRWEF 241

Query: 219 FDLNLNIQLPLFRGIRGK-----------PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
            D   + + PLF   R              L  G+ +  +R L    G     T H LRH
Sbjct: 242 DDKVNDPRAPLFPSERRYGDGSSRAVTDDALRTGLAEAVVRHLPHQAG---QLTPHVLRH 298

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             A+ L  NG D+ +IQ ILGH  L+TT IY +V   +  D 
Sbjct: 299 FAASDLYRNGMDVVAIQEILGHEWLNTTMIYVHVEKSHVEDA 340


>gi|298373374|ref|ZP_06983363.1| integrase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274426|gb|EFI15978.1| integrase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 409

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 96/277 (34%), Gaps = 19/277 (6%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF-ISKRRTQKIGDRSLKRSLSG 94
           +  Y         F+      K++     QL+   I  F           + +       
Sbjct: 134 IHGYHSTRIHLQKFIQKKY--KVSDLAFSQLTENFIHEFGQYFLGECGFQESTFYNIAIH 191

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +K+  +   +  +T        +  K    LP+AL+++     +D +      + +    
Sbjct: 192 LKTVCRLAYREGLTDVLLFDKAKISKGDKRLPKALDKEA----LDKLKALNFEDLEEDME 247

Query: 155 RNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
               I       G    + + L  ++   DD  +L ++    K  ++  +  + +AI   
Sbjct: 248 TARDIFLFACYTGAAYCDLMGLGKKHLFRDDGGSLWLKFNRHKTGVLCRIKLLPQAIR-- 305

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                        LP         +    +Q Y++ LR    +P   T HT RH+FAT +
Sbjct: 306 LMEKLHSDGRETLLPF--------MGYATYQSYLKALRLRADIPFPFTTHTARHTFATLI 357

Query: 274 -LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            L  G  + ++  +LGH  +S T+ Y  V  +   + 
Sbjct: 358 TLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFEE 394


>gi|289549366|ref|YP_003474354.1| integrase family protein [Thermocrinis albus DSM 14484]
 gi|289182983|gb|ADC90227.1| integrase family protein [Thermocrinis albus DSM 14484]
          Length = 288

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 52/303 (17%), Positives = 110/303 (36%), Gaps = 46/303 (15%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +ER  S+ T+ +Y      F        +E +  + +    + +         +  +   
Sbjct: 11  LERSRSERTVITYSKCLELFARNTGLTEDELLNTEPVHLYQHID---------SSSLSPA 61

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNL----------KKSNSLPRALNEKQALT 136
           S+   LS +K F K+  +R   +      +             +     P+AL  ++   
Sbjct: 62  SVLTHLSALKHFFKFAVRRGYMSREAYTKLEAAIEELRDEIGRRNVRRAPKALTREELSR 121

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---- 192
           ++++            +     +  L    G+R+SE   L   N   D+S +        
Sbjct: 122 IMESTK----------NTVYERVYTLFLYSGIRLSEYKHLKKDNFFMDKSGIYWLRLPAY 171

Query: 193 --KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
             KG+K R+ P++   ++          + +   +   L        +N G  Q Y  +L
Sbjct: 172 ATKGNKERMAPIMGPTKEE--------TYQVTEKLARWLENYEENLVVNAGSLQVYTYRL 223

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDW 309
              L +P   + H+ RH++ T+L+++G     ++   GH  + TT  IY   + +     
Sbjct: 224 SHRLNIPF--SLHSFRHTYITNLINSGFPAEVVKEFAGHSHVKTTIDIYYRFSPERARKL 281

Query: 310 MME 312
           + E
Sbjct: 282 VEE 284


>gi|215408030|emb|CAS02342.1| integron integrase [uncultured bacterium]
          Length = 150

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 49/93 (52%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 58  RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 117

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           SFAT LL +G D+R++Q +LGH  +STT IYT+
Sbjct: 118 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 150


>gi|326405643|gb|ADZ62714.1| integrase [Lactococcus lactis subsp. lactis CV56]
          Length = 394

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 53/313 (16%), Positives = 111/313 (35%), Gaps = 38/313 (12%)

Query: 30  GLSKLTLQSYECDTRQF-LIFLAFYTEEKITIQTIRQLSYTEIRAFI---------SKRR 79
           G+   T+Q  +     + L  L  Y  +K+    ++Q+    +  ++         +  R
Sbjct: 83  GVKPRTVQIMQTRLNNYVLPALGEYRIDKVNSIILQQI----VNQWMINASQPLNGAYHR 138

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS----NSLPRALNEKQAL 135
            +  G    K   + ++   K+     +  ++  +N+   K          + L  +Q  
Sbjct: 139 PKGKGKD-FKIYFNIVERIFKHALSLGLVKDNPCVNVIVPKVRLESTEKKVKHLTAEQLK 197

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG- 194
              +   +    + K+ +   + +  LL   GLRI EA++L+  +I     ++ +     
Sbjct: 198 IFFEY--IGALPKEKYTNELMTGLCRLLVASGLRIGEAVALSWSDIDFKTGSVSVSKTTL 255

Query: 195 -----------DKIRIVPLLPSVRKAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                         RIV +     + +  +          +    Q  +F    G  L+ 
Sbjct: 256 RAVIQSTPKTDKSNRIVLIDSKAVEVLKHWELFQAKYFMSIGKGKQELVFPNRTGGVLDY 315

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYT 299
              + ++ +  R   LP     H  RHS A+ LL+     + IQ  LGH  +  T   Y+
Sbjct: 316 QTMRPFLIKWLRACQLPQ-VGFHGFRHSHASLLLNADVPYKEIQERLGHASIKMTMDTYS 374

Query: 300 NVNSKNGGDWMME 312
           ++ S N    +  
Sbjct: 375 HLESDNKIKAVER 387


>gi|299137517|ref|ZP_07030698.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
 gi|298600158|gb|EFI56315.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
          Length = 346

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 108/288 (37%), Gaps = 30/288 (10%)

Query: 33  KLTLQSY----ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           K  L+ Y      D + F I +    ++    +   ++  +EI A++   +       + 
Sbjct: 77  KHALEWYIEHGRKDVKNFRIRMNIILKD-FGHRVAEEIKPSEIDAWL---KKYDWSPATK 132

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
               +      K        + +    +    + N+  R L+ ++   + + + L     
Sbjct: 133 NCYKNVFGKTFKIAFADGKVSGNPARLVEQRPEKNARLRFLSAEEEAKIREAIDLRCPRH 192

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR 207
              +D        +    G+R SE  SL    +   +  + + + K    R +P+  +  
Sbjct: 193 MPELD--------IALNTGMRKSEQYSLEWGQVSFRRKRILLDETKNGSSREIPMNKTCV 244

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPL--NPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           KA  E +   P +        +F+   G+ L  +   F R +   +       + T H L
Sbjct: 245 KAFEELHADRPHEGR------IFQSKYGRDLNDSRAWFDRVVEDAKVS-----NFTWHAL 293

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           RH+F + L+  G DLR+ Q + GH  +S T  Y ++  ++    + ++
Sbjct: 294 RHTFISRLVMAGVDLRTAQELAGHKTISMTVRYAHLAPEHNQAAIEKL 341


>gi|298388051|ref|ZP_06997597.1| integrase [Bacteroides sp. 1_1_14]
 gi|329960270|ref|ZP_08298712.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|298259151|gb|EFI02029.1| integrase [Bacteroides sp. 1_1_14]
 gi|328532943|gb|EGF59720.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 407

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 58/315 (18%), Positives = 114/315 (36%), Gaps = 37/315 (11%)

Query: 14  LLKERQNWLQNLE------IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           LL   + ++++ E       E+G    T QSY         F+      K++      L+
Sbjct: 109 LLGYFRTFIEHFEKRVGVNREKG----TAQSYRYACNCVAAFIQEKY--KLSDVPFTALN 162

Query: 68  YTEIRAFISKRRTQKI-GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
            + I  +    RT++     ++   ++ + + +       I T          +      
Sbjct: 163 RSFIDNYDLYLRTERRFALGTIVLLVTRLNTIVGEAIAEGIITADPFAGYEA-EHPEREQ 221

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQ 185
           + L   +   L+   L    H+ K    R+  +       G+   +   LT ++  + + 
Sbjct: 222 KYLTAAELQRLMTTPL----HDPKLYHIRDLFLFSC--YTGIPYGDMCRLTTEDLEVAED 275

Query: 186 STLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
             + I   + K      VPLL      + +Y D+ P             G      +   
Sbjct: 276 GEVWIKTARKKTKIDYEVPLLDIPLLILDKYRDMAPE------------GKLLPMYSNNE 323

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             R ++++    G+      H  RH++AT + LS+G  L ++  +LGH R+STTQIY  V
Sbjct: 324 LNRTLKRIAAICGIERKLVFHCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYAKV 383

Query: 302 NSKNGGDWMMEIYDQ 316
                      + ++
Sbjct: 384 TDDKIDMDTRSLEEK 398


>gi|154490810|ref|ZP_02030751.1| hypothetical protein PARMER_00727 [Parabacteroides merdae ATCC
           43184]
 gi|154088558|gb|EDN87602.1| hypothetical protein PARMER_00727 [Parabacteroides merdae ATCC
           43184]
          Length = 333

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 97/251 (38%), Gaps = 32/251 (12%)

Query: 71  IRAFISKRRTQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
            R ++   R  K     +   S     S  +  LK   + K   E+    +  ++  +  
Sbjct: 104 FRDYLLHARQLKHTDKMVSRNSAASYFSLFRGVLKLAYRDKYLRENPNDFLEKIESRDIH 163

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--- 182
              L + +  TL        S        RN+++   L   GLRIS+ L+L  +N+    
Sbjct: 164 KEFLTQDELKTL-------ASTPCDIPVLRNASLFSCL--TGLRISDILNLKWENLCTAP 214

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           D    +R++ +  +           +A+L                 +F+ +R       +
Sbjct: 215 DLGHCIRLRTQKTQT----------EALLPISYEAYALCGEPGTGKVFKELR-----RCM 259

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               ++   +  G+    T H  RH++AT  ++ G D+ ++  +L H  ++TTQIY  + 
Sbjct: 260 TGYPLKAWIKKAGIQKHITFHCFRHTYATLQIAAGTDIFTVSKMLTHKNVATTQIYAELV 319

Query: 303 SKNGGDWMMEI 313
           S+   + + +I
Sbjct: 320 SEKKRETVDKI 330


>gi|310780212|ref|YP_003968544.1| integrase family protein [Ilyobacter polytropus DSM 2926]
 gi|309749535|gb|ADO84196.1| integrase family protein [Ilyobacter polytropus DSM 2926]
          Length = 235

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 72/188 (38%), Gaps = 9/188 (4%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L  ++   L+  +     +   +   R+  +  + + CGLR SE  S+  ++   D+ 
Sbjct: 54  KYLRYEEFQHLIKTI----ENNGDYFWMRDKLLFLIAFECGLRASEVGSIKKEDFFSDKR 109

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            +  +           L      +LE +         N    +F   +  P+      + 
Sbjct: 110 EMFCRRLKGSRNNTVKLTQDTSILLENFMERY----PNDSPYIFLSRKKLPITKFTLNKI 165

Query: 247 IRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            ++  +   LP      HT++H+   H+   G D++ +Q ILGH  +  T IY +  +K 
Sbjct: 166 CKKYFKSAALPMEKAHFHTIKHTSGVHMAEEGLDIKEVQYILGHRNVDNTMIYFDFTTKQ 225

Query: 306 GGDWMMEI 313
                 ++
Sbjct: 226 QESLYSKL 233


>gi|309798474|ref|ZP_07692766.1| integron integrase [Escherichia coli MS 145-7]
 gi|308118022|gb|EFO55284.1| integron integrase [Escherichia coli MS 145-7]
          Length = 194

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 86/211 (40%), Gaps = 31/211 (14%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           + L+ER  +L         S  T Q+Y    R F+ F          ++    L  +E+ 
Sbjct: 5   DQLRERIRYLHY-------SLRTEQAYVHWVRAFIRFH--------GVRHPATLGSSEVE 49

Query: 73  AFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  LP  L  
Sbjct: 50  AFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRRLPVVLTP 106

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            + + ++            +++  +     LLYG G+RISE L L  +++  D  T+ ++
Sbjct: 107 DEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVR 155

Query: 192 -GKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
            GKG K R + L  S+  ++ E         
Sbjct: 156 EGKGSKDRALMLPESLAPSLREQLSRARAWW 186


>gi|260431818|ref|ZP_05785789.1| integrase family protein [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415646|gb|EEX08905.1| integrase family protein [Silicibacter lacuscaerulensis ITI-1157]
          Length = 367

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 116/326 (35%), Gaps = 42/326 (12%)

Query: 11  SFELLKERQNWLQNLEIE----RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           S  +    + WL + E+     R + + TL+ Y    R  +        +K+    I QL
Sbjct: 60  SITVADAAKAWLDHCEVRCKTGRRMERSTLRGYSDYVRLHITDAQIGIGDKL----IVQL 115

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--- 123
           +   +  F  +       +   +R+LS +K  L +         +    +R +K S    
Sbjct: 116 TRRHVNEFRDRLLLNGRSEHLTRRALSVLKLILDHAIDNGQLFTNAAQGVRVIKSSRIDY 175

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
             P   +++    L++        + K        I+  L   G+R SE   L  Q++  
Sbjct: 176 KAPVP-SKETIRALIE----AADDDFKP-----HLIVSAL--TGIRASEFRGLRWQDVDF 223

Query: 184 DQSTLRIQ------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           ++  + ++                  R +P  P V  A+  +   CP     +    +F 
Sbjct: 224 EKGFIYVRQRADAYNQMGEPKSRAGYRDIPAGPMVLNALRRWKLRCP----KSDLGLVFP 279

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
             RG  L     Q   R+L+  +G+ L    H LRH   +  +  G  ++ + +  GH  
Sbjct: 280 APRGGVLQHTRTQARFRKLQEQVGVKLR--WHDLRHFAVSLWIEQGFSIKEVMTFAGHSS 337

Query: 292 LSTTQ-IYTNVNSKNGGDWMMEIYDQ 316
           +  T   Y ++         M + +Q
Sbjct: 338 IQMTMERYGHLFPSPDHQNAMALVEQ 363


>gi|331083353|ref|ZP_08332466.1| hypothetical protein HMPREF0992_01390 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330404434|gb|EGG83979.1| hypothetical protein HMPREF0992_01390 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 411

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 118/344 (34%), Gaps = 61/344 (17%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + + +  +  L + T  SY       L     Y  +    + I  + Y+++  F      
Sbjct: 77  FDRYMSTKYNLRESTKSSY-------LYTYDHYVRDTFGKKRIADIKYSDVLQFYYYLLN 129

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-----RNLKKSNSLPRALNEKQA 134
           + KI   +L      +    +   + +I   +    +     R   K+  +  AL  +Q 
Sbjct: 130 EVKISLGTLDTVHCLLHPTFQLAVRDEIIRNNPTDGVMKEISRESGKNRGIRHALTVEQQ 189

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-- 192
              ++ +  H       I      +  +L G G RI EAL L  Q++  D+ T+ I    
Sbjct: 190 RAFMEYIANH------PIYYHWWPMFTVLLGTGCRIGEALGLRWQDLDYDKRTISINHSL 243

Query: 193 -------------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----P 228
                                  IR +P+L  V+ A    Y+    +     ++      
Sbjct: 244 SYYQKPESNKSVLRISKPKTEAGIRTIPMLDIVKDAFEMLYEEQLENGFNESEIDGMSGF 303

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLG---------------LPLSTTAHTLRHSFATHL 273
           +F    G   NP      I+++                    +  + + H LRH+F T L
Sbjct: 304 IFCNRFGTVPNPQTVNHTIKRIANSYNADEVVRAKKERRDPIILPNFSCHHLRHTFCTRL 363

Query: 274 LSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQ 316
             N  +L+ IQSI+GH  + TT  IY     +   +    +  +
Sbjct: 364 CENETNLKVIQSIMGHRNIETTMDIYAEATEEKKQESFENLAAK 407


>gi|323185236|gb|EFZ70601.1| integrase [Escherichia coli 1357]
          Length = 326

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 93/239 (38%), Gaps = 29/239 (12%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + S++  +     ++    S + S F +  +  + +  + + NMR    +      L  +
Sbjct: 95  YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 154

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q + L+         + K  D   + ++ +    G R  EA++LT   +   + T  ++ 
Sbjct: 155 QIVELL--------ADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITF-VRT 205

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+   + + I+       F                       FQ      + 
Sbjct: 206 KGKKNRSIPISKELYEEIMALDGFNFF-------------------TDCYFQFLSVMEKT 246

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++   +    + 
Sbjct: 247 SIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHLETALR 305


>gi|307823332|ref|ZP_07653561.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307735317|gb|EFO06165.1| integrase family protein [Methylobacter tundripaludum SV96]
          Length = 311

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 54/282 (19%), Positives = 100/282 (35%), Gaps = 11/282 (3%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQ--TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97
               R  L  +A   +    ++      L Y  +    +  R  +    ++  +L+ I+ 
Sbjct: 33  RRSMRSLLQQVATLNKWSGPLEQMPWLTLRYEHVAKIRAVLRQVQKSPNTINTTLAAIRG 92

Query: 98  FLKYLKKRKITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
            LK               ++++ +     LP     +Q   +  + L            R
Sbjct: 93  VLKAGFLSGQFPAQEWQRIQSIDRVNGKHLPAG---RQLRAVEISRLFKACQRDPAHGIR 149

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY 214
           ++AIL LL   GLR SE   L   +       L ++ GKG + R + L    R  + ++ 
Sbjct: 150 DAAILALLAYAGLRRSEVAGLNVNDYTRRNGQLIVREGKGQRQRELILPTVARSYVRQWL 209

Query: 215 DLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                +           G     + +N       +++  R  G+    + H LR +F T 
Sbjct: 210 QCRGNEPGAMFCQLAKNGNYLPAQRINAQRVYGILKRRARDAGIE-HCSPHDLRRTFVTR 268

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           LL  G D  + + + GH ++ TT +Y   + K     M   Y
Sbjct: 269 LLEQGVDFNTARQLAGHEQIQTTALYDRRHIKTQRQAMANFY 310


>gi|291517466|emb|CBK71082.1| Site-specific recombinase XerD [Bifidobacterium longum subsp.
           longum F8]
          Length = 259

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 62/281 (22%), Positives = 101/281 (35%), Gaps = 43/281 (15%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           WL +L+   G S  TL +  C        L             R +   ++   ++    
Sbjct: 2   WLDSLKAA-GYSTNTLNTRRCQMSALSRALEG---------DPRDVEGDDL---LAHFAA 48

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     + K + +   S+ ++LK    +       +  +K+    PR   +   LT +  
Sbjct: 49  KDWKPETRKGAKNACVSYFRWLKASGRSEADPSEFLPTVKRPEPHPRPCPDVVILTALRK 108

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIR 198
                             +L L   CGLR  E   +  +++M D    +L + GKGDK R
Sbjct: 109 ATDSE-----------RLMLRLGAECGLRRFEIAKVHSRDVMRDLVGWSLVVVGKGDKQR 157

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           IVP+   +   I             +    LF G            R++  L     L  
Sbjct: 158 IVPIGDDLALLIR------------SAHGYLFPGRWSGHAESSYVGRHLSDL-----LGD 200

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
             TAH+LRH +AT   +   DL  +  +LGH  + TTQ Y 
Sbjct: 201 GWTAHSLRHRYATTTYAATRDLLLVSKLLGHASVETTQRYI 241


>gi|255012552|ref|ZP_05284678.1| integrase [Bacteroides sp. 2_1_7]
 gi|256839009|ref|ZP_05544519.1| integrase [Parabacteroides sp. D13]
 gi|298374561|ref|ZP_06984519.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           3_1_19]
 gi|301308234|ref|ZP_07214188.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|256739928|gb|EEU53252.1| integrase [Parabacteroides sp. D13]
 gi|298268929|gb|EFI10584.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           3_1_19]
 gi|300833704|gb|EFK64320.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 310

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 52/296 (17%), Positives = 102/296 (34%), Gaps = 40/296 (13%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  L  ++  S  T +SY+   R F  F      E+I       ++   +  + S    
Sbjct: 13  YITCLREKKRYS--TAKSYQDALRSFKCFCGR---EEI---PYAYINRDTLLRYQSWLLA 64

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESN------ILNMRNLKKSNSLPRALNEKQA 134
           +     ++   +  I+       +                 + + K+  +LP      ++
Sbjct: 65  KGCARNTVSTYMRRIRHIYNLAVEVGEAAYIPHLFKHVFTGVES-KRKKALP-----SES 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           L L+    +    + +       A   +   CG+   +   L  ++I +   +   + K 
Sbjct: 119 LRLLMTSPVTDPQQKRTQS----AFCLMFLFCGMAFVDLAHLRKEDIKEGILSYY-RQKS 173

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP----------GVFQ 244
             +  V +    +  + E       D        LF  + G               G F 
Sbjct: 174 GSLIQVEIPAEAQGLLNELAADTTED-----SPYLFPFLEGMKTGEDAYKEYNTVLGGFN 228

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           R ++ L   +G+    T++T+RHSFAT L      +  I  +LGH  + TTQIY  
Sbjct: 229 RRLKILSESIGIHTRVTSYTIRHSFATTLKEQNVPIEMISELLGHKSIKTTQIYLK 284


>gi|89147361|gb|ABD62541.1| integrase [uncultured bacterium]
          Length = 163

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 35/111 (31%), Positives = 55/111 (49%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +G G       L      A+ E+     F  N   + P     R    +  + Q  +++ 
Sbjct: 52  RGYGRVYLPYALERKYPHAVTEWTWQWVFPANKISKDPRSDQSRRHHASEDMLQSEVKRA 111

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            +  G+    + HT RHSFATH+L +G D+R++Q +LGH  + TTQIYT+V
Sbjct: 112 VKRAGVAKRVSCHTFRHSFATHMLESGYDIRTVQELLGHSSVQTTQIYTHV 162


>gi|218442440|ref|YP_002380761.1| integrase [Cyanothece sp. PCC 7424]
 gi|218175211|gb|ACK73942.1| integrase family protein [Cyanothece sp. PCC 7424]
          Length = 204

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 71/191 (37%), Gaps = 13/191 (6%)

Query: 117 RNLKKS-NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
              K+        L   +   ++       + +      R+SAI+ L++  GLR +E ++
Sbjct: 18  PPPKQPSERDREYLRPYEVEAMI-----KAARKVGRHGVRDSAIILLMFRHGLRTAELVT 72

Query: 176 LTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           L    I      + +   K     I PL  S  +A+           +      +F   R
Sbjct: 73  LKWSQIDLTGGYIEVHRVKHGHDSIHPLRSSELRAL------RQIQRDYPETQYVFVSER 126

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
             PL+    +  + +      +  +   H LRH+   +L S G D R+IQ  LGH  +  
Sbjct: 127 KAPLSTRTIRHLVARAGLLANIGEAVHPHQLRHACGYYLASQGHDTRAIQDYLGHKNIYH 186

Query: 295 TQIYTNVNSKN 305
           T  YT ++   
Sbjct: 187 TVRYTQMSPSR 197


>gi|301301431|ref|ZP_07207569.1| site-specific recombinase, phage integrase family [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300850983|gb|EFK78729.1| site-specific recombinase, phage integrase family [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 249

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 86/228 (37%), Gaps = 25/228 (10%)

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSL--PRALNEKQALTLVDNVLLHTSHETKWID 153
           K  L+Y    K+ +E+ + N+   +K  +       ++++  T +          +K  +
Sbjct: 21  KKILQYAVTLKLISENPMNNVIKPRKKKTYGSDNYYSKEELKTFLAY--------SKKEE 72

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK----- 208
                +  LL   G+RI E L+L   +I  + S + I                 K     
Sbjct: 73  FHVYVLFRLLAYSGMRIGELLALKVADIDFNTSQISITKTISSDADSRFELHKPKTTTGN 132

Query: 209 -------AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
                    +        D   +  +  F G   KP +P     +  ++ +   L    +
Sbjct: 133 RIISVDPDTINLVSTLTKDKKKDDFIFRFYG-CSKPYSPRTVALWKNKIIKKANL-REIS 190

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
            H  RH++ + L  +G +++ IQ  LGH ++  T  +YT+++  N  D
Sbjct: 191 LHGFRHTYTSLLFESGVNIKEIQRQLGHSKVEMTLNVYTHLSRNNNND 238


>gi|83719733|ref|YP_443767.1| phage integrase family site specific recombinase [Burkholderia
           thailandensis E264]
 gi|83653558|gb|ABC37621.1| site-specific recombinase, phage integrase family [Burkholderia
           thailandensis E264]
          Length = 159

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 8/158 (5%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYD 215
            + L    G R +E L+L  + +  ++S LR+     K  K R+VPL  +   A+ +   
Sbjct: 4   FVRLALSTGCRKNELLALDWRRVDFERSFLRLDAEHTKNGKRRVVPLNSAALSALRD--Q 61

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
               +   +    +F G  GK +     Q+        +G+  +   H LRH+FA+ L+ 
Sbjct: 62  RDWVERKCSGSEWVFPGWSGKRI--QTLQKGFNAACARVGIE-NFRIHDLRHTFASWLVM 118

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G  L  ++ +LGH  +S T+ Y +++   G   + ++
Sbjct: 119 EGVSLYVVKDLLGHSSISVTERYAHLSPDQGRAAVQKL 156


>gi|333008862|gb|EGK28322.1| integrase [Shigella flexneri K-272]
 gi|333020172|gb|EGK39442.1| integrase [Shigella flexneri K-227]
          Length = 350

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 92/239 (38%), Gaps = 29/239 (12%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFL-KYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + S++  +     ++    S + S   +  +  + +  + + NMR    +      L  +
Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSIFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q + L+         + K  D   + ++ +    G R  EA++LT   +   + T  ++ 
Sbjct: 179 QIVELL--------ADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITF-VRT 229

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+   + + I+       F                       FQ      + 
Sbjct: 230 KGKKNRSIPISKELYEEIMALDGFNFF-------------------TDCYFQFLSVMEKT 270

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++   +    + 
Sbjct: 271 SIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHLETALR 329


>gi|312126544|ref|YP_003991418.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
 gi|311776563|gb|ADQ06049.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 373

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 63/329 (19%), Positives = 114/329 (34%), Gaps = 44/329 (13%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
            N L E  +F  L +   WL  +   R +S  T QSY           A + +  +    
Sbjct: 54  KNKLLEQKTFGELLDL--WLNTVAKNR-VSLSTFQSYSSSI-------ALHIKPFLGEYE 103

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSL-SGIKSFLKYLKKRKITTESNILNMRNLKK 121
           + +L+  +++ +     T+K    +L       I   L Y  K  +  ++    +   KK
Sbjct: 104 LGKLTPMDLQKYYQHVMTEKGLSSTLALYHHRIIHQALDYAVKMDMLEKNPADYVDPPKK 163

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
            N  P   +E+     ++           +        + L    G+RI E  +L  ++I
Sbjct: 164 RNYQPSIWDEETIKKALEI----------FKGTNIRIPVLLAIYTGMRIGEIAALKWEDI 213

Query: 182 MDDQSTLRIQGK----------------GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
             +Q  + +                    +  RIV +   V   + E+            
Sbjct: 214 NLEQGYITVNKTFMKINGQTYIKEKAENKNSYRIVAISNQVVSELKEWKAKQEKLKEELK 273

Query: 226 QLPLFRGIRGKP-----LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
           +L    G           +P    +  ++      LP     H LRH+ A+ LL +G D 
Sbjct: 274 ELYHDEGFVCTFEDGRVQDPKYITKVFQKTIEKHKLPK-IRFHDLRHTHASILLKHGVDP 332

Query: 281 RSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
           + I   LGH  ++TT  IY++V  +    
Sbjct: 333 KHISDRLGHSTITTTLNIYSHVFDEKRKK 361


>gi|134098886|ref|YP_001104547.1| phage-related integrase/recombinase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133911509|emb|CAM01622.1| phage-related integrase/recombinase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 374

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 64/328 (19%), Positives = 117/328 (35%), Gaps = 35/328 (10%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFL---------AFYTEEKITIQTIRQLSYTEIRA 73
           +N ++ R L+  T++  E   R F+ +           F  E    ++ IR  + + +R+
Sbjct: 38  RNQQLARNLAFSTIEQRERTVRAFVDYTNAFPWDWTPQFADEWFADLRAIRHCARSTLRS 97

Query: 74  FISKRRTQKIGDRSLKRSLSGI--KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
           +    R+      S          + F  +     +  + N        +++   RA   
Sbjct: 98  YQDALRSFGDYVTSSAYEWPAECERRFGTFPVP--VIHDGNAAVHVQEIEASPTKRAFTV 155

Query: 132 KQALTLVDNVL-----LHTSHETKWIDAR-NSAILYLLYGCGLRISEALSLTPQNI---- 181
           ++     D           +    W+ A  ++ +    Y  GLR +EA  L   +     
Sbjct: 156 EELQAFFDYADDQVLKARGAGRKGWLPAFRDATLFKSAYAYGLRRNEARMLDTVDFGRNP 215

Query: 182 ----MDDQSTLRIQ----GKGDKIRIVPLLPSVRKA----ILEYYDLCPFDLNLNIQLPL 229
                 +   +R++     KG   +   ++  V       + E+ +     L +     L
Sbjct: 216 HEPKFGEFGRVRVRFGKAKKGSPPKQRTVMTVVPLWSVLVVQEWVETVRPLLAVEGNSAL 275

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           +   RG  +      R     R  LGL      H+LR S+AT+L+ +G D   +Q  LGH
Sbjct: 276 WPSERGPRIGLARIDRRFATYRDALGLDPGLDFHSLRRSYATYLIEDGYDPLFVQFQLGH 335

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              STT +YT V+S      M     Q 
Sbjct: 336 EHASTTSLYTCVSSDFRVRTMRRALGQA 363


>gi|57233840|ref|YP_182174.1| phage integrase family site specific recombinase [Dehalococcoides
           ethenogenes 195]
 gi|57224288|gb|AAW39345.1| site-specific recombinase, phage integrase family [Dehalococcoides
           ethenogenes 195]
          Length = 386

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 57/318 (17%), Positives = 106/318 (33%), Gaps = 48/318 (15%)

Query: 14  LLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           + +  Q+WL    +    LS  T++ Y             +    +    I +L    ++
Sbjct: 65  MYEYMQSWLNDYCKP--NLSPRTVELYSY-------ISTKHIIPTLGNIPIVELKPQHLQ 115

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
              + +++  + +R+++     +   LK   K  + + +    +   K      + +NE 
Sbjct: 116 HLYADKQSFGLSNRTVQIIHVVLHKALKNAVKTGLLSRNIAEAVDAPKIQRHEMQVMNES 175

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--------- 183
               L++          K  +    A+ Y     G+R +E L+L   +I           
Sbjct: 176 DMQVLLE----------KAKETPYYALFYTSLFTGMRRAECLALRWSDIDLILCQVYVLR 225

Query: 184 -----------DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN------LNIQ 226
                       + T +        R + L PS    + E+Y              L   
Sbjct: 226 SMQYVQDADLGKRITFKEPKTSKSRRQIALSPSNVIILREHYQDQSELRKTLNLPGLTDS 285

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
             +F    G PL P        +L R  GL      H  RH+ A+ LL  G   + +Q  
Sbjct: 286 DLVFSHYDGSPLLPNSVTHAWIKLARRCGLN-GIRLHDARHTHASLLLKQGVHPKIVQER 344

Query: 287 LGHFRLSTT-QIYTNVNS 303
           LGH  +  T   Y++V  
Sbjct: 345 LGHGSIQITLDTYSHVAP 362


>gi|309801163|ref|ZP_07695292.1| site-specific recombinase, phage integrase family [Bifidobacterium
           dentium JCVIHMP022]
 gi|308222052|gb|EFO78335.1| site-specific recombinase, phage integrase family [Bifidobacterium
           dentium JCVIHMP022]
          Length = 332

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 61/340 (17%), Positives = 121/340 (35%), Gaps = 39/340 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           MEG  +    S+ L +    +L+    ++ +++ T+   E   +     +     E++T 
Sbjct: 1   MEGGTVQRRTSYTLAEYCDRYLEMRRAKKEVAETTIGKQEWQFKAVCHHIGHVKLEEVTP 60

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           + +  +    ++        +K G   + +    I    ++  K  I   +        K
Sbjct: 61  RMLNDVYVAMMQG--DTLSGRKSGGSYVNQIHDNITLVFQHAIKEGILVSNPCDKADPPK 118

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                 +A++  +   LV  +     HE  ++         L    GLR  E   L+  +
Sbjct: 119 MDTKPKKAIHPDKVRELVAELDPTDPHECAYL---------LAVTLGLRRGEICGLSWND 169

Query: 181 IMDDQSTLRIQGKGDK------------IRIVPLLPSVRKAILE--------------YY 214
           I  +++ + I    D             +R++PL P  + A+L+              + 
Sbjct: 170 IDFERNIVDISHSYDNLGNLKGTKIKAGMRLLPLSPVTKDALLKMKEAQAAQFAKTNSFR 229

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                 L      P+  G  G+ +  G   R+    R+  GL    T H LRH++ T L 
Sbjct: 230 KPEEGYLEQTEDGPVIAGHYGERVQSGTMSRWWSVDRKEFGLE-GYTLHELRHTYLTMLA 288

Query: 275 SNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
             G   + +Q +  H+    T  IYT+VN       +  +
Sbjct: 289 MGGVHPKVMQELASHYSSQITMDIYTHVNMDAKRAAVDAV 328


>gi|256961377|ref|ZP_05565548.1| prophage ps2 protein 01 [Enterococcus faecalis Merz96]
 gi|293387222|ref|ZP_06631780.1| prophage LambdaSa03, site-specific recombinase, phage integrase
           family [Enterococcus faecalis S613]
 gi|256951873|gb|EEU68505.1| prophage ps2 protein 01 [Enterococcus faecalis Merz96]
 gi|291083360|gb|EFE20323.1| prophage LambdaSa03, site-specific recombinase, phage integrase
           family [Enterococcus faecalis S613]
          Length = 378

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 117/330 (35%), Gaps = 48/330 (14%)

Query: 18  RQNWLQNLEIERGLS--KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            +N L +   +  LS  K ++++Y    +     +            IR       + FI
Sbjct: 65  LENLLNSWWQQHQLSIRKTSVKAYGKILKYIFSNMNVDVL-------IRNTDTKFFQDFI 117

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-------PRA 128
           +            K+  S +     Y +   +  E+ I  ++ +K   +         + 
Sbjct: 118 NDL---PHSWEYKKKFKSVLNMSFTYAQDMGMIDENPINRVKVVKPPLTKENFENIESKY 174

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L EK+   L++         + +    +  +   +Y  GLR  EA+SLT  + + ++  +
Sbjct: 175 LEEKEVYQLLNYYY------STFQSVHHGRLAEFMYLTGLRAGEAISLTINDYVKNEHAI 228

Query: 189 RIQGKGDKI-----------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            + G  D                   R V L     K I E                LF 
Sbjct: 229 LVNGTLDYSNGYKNATKELPKTLASFRKVELSNRAVKIIEELILEREIKFKEQTN-YLFV 287

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLG---LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           G  G+P+    F   +++    LG   +  + ++H  RHS  + L      +++I   +G
Sbjct: 288 GKTGRPIQVNSFNASLKKANESLGKNKINKTISSHIFRHSHISLLAELNVPVKAIMERVG 347

Query: 289 HFRLSTT-QIYTNVNSKNGGDWMMEIYDQT 317
           H    TT +IYT+V  K     ++E  ++ 
Sbjct: 348 HVDTETTLKIYTHVT-KKAKTNLVEALNKY 376


>gi|254933695|ref|ZP_05267054.1| phage integrase [Listeria monocytogenes HPB2262]
 gi|293585259|gb|EFF97291.1| phage integrase [Listeria monocytogenes HPB2262]
 gi|332310427|gb|EGJ23522.1| Phage Integrase [Listeria monocytogenes str. Scott A]
          Length = 400

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 94/254 (37%), Gaps = 30/254 (11%)

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           +++ + +  RS++     I S  +   + K+   +    +R  K +   P      +   
Sbjct: 148 EKKNKPLSPRSIRNIYFAINSVFETAVEWKVIPINPAEGVRLPKTTKRPPTIYTPAEIE- 206

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----- 191
           L++  L+               ++Y+    G R +E  +L  +++   +  L  +     
Sbjct: 207 LLNAALVKEPLRL-------QVMIYIALISGCREAELAALEVKHVNLIEDELTFEQTLVA 259

Query: 192 -----------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLN----LNIQLPLFRGIRGK 236
                       K D   IV +   +   I  Y      DL           LF  + GK
Sbjct: 260 KAGEGLLLKESTKNDVAGIVSIPAWLTNLIETYISNEVLDLKTEGKWTNHKFLFANMEGK 319

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH-FRLSTT 295
           P+ P    +  ++      LP+    H LRH+ AT LL+ G D++ IQ  L H   ++T+
Sbjct: 320 PIRPDSIYQRWKRFLERHNLPV-IRFHDLRHTSATLLLNKGRDIKIIQERLRHKSSVTTS 378

Query: 296 QIYTNVNSKNGGDW 309
            IY +V      D 
Sbjct: 379 NIYAHVLKDTHKDA 392


>gi|291286568|ref|YP_003503384.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290883728|gb|ADD67428.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 390

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 53/307 (17%), Positives = 108/307 (35%), Gaps = 35/307 (11%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
            S  T  +Y       L              +I  +    IR +I   +  ++  ++LK 
Sbjct: 104 FSHATFITYTSSINNLLATFENM--------SICDIKPAHIRTYI---KNSEVSPKTLKN 152

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +  + S L    +  +  ++   +++    S+     L+ ++   +++ +  H  +   
Sbjct: 153 HVGVLSSILSAAVEDDLIPKNPCTSVKLPHISSVEVDPLSLEEITMILNWMKSHHPNM-- 210

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----GDKIRIVPLLPSV 206
                  A   + +  G+R  E + L   +I  +  T+ I         K R        
Sbjct: 211 ------LAFFAVAFFTGMRTGEIMGLQWGDIDFNSHTITISRTITAGKLKHRTKTADSRT 264

Query: 207 RKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPL--NPGVFQRYIRQLRRYLGLPLSTTA 262
              +  L+ Y              LF     KP      + + Y +   + LG+    T 
Sbjct: 265 VDILTELDEYLSYHKQFTYMKSEWLFLTYENKPFNKTDNIIKTYWKPCLKALGIKYR-TL 323

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLST-TQIYTNVNSKNGGDWMMEIYDQTHPSI 321
           +  RH+FA  +L  G ++  ++ +LGH  L    + Y N   K  G    +++      I
Sbjct: 324 YQTRHTFACLMLDVGENINWLKKMLGHKTLDMILRRYGNRIDKTVGRKGGKLF------I 377

Query: 322 TQKDKKN 328
            +K +KN
Sbjct: 378 KKKTQKN 384


>gi|255693813|ref|ZP_05417488.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|260620383|gb|EEX43254.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 406

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 118/319 (36%), Gaps = 28/319 (8%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
            N++PE +      ER+     L I R     +  +Y       L    F     +    
Sbjct: 97  ANSVPEYLLQAGEVERER----LRI-RSAEINSTSTYRQSKTTQLNLRQFIESRGMKDIA 151

Query: 63  IRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
              ++     +F    + +    +  +   L  +   +     R+I   + I ++   KK
Sbjct: 152 FSDITEEFAESFKVFLKKELGYRNSHVNHCLCWLNRLIYIAVDREILRANPIEDVAYEKK 211

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
                R ++  +   +++     T      ++      ++     GL  ++  +L P++I
Sbjct: 212 EPLKLRHISRGELKRMME-----TPLPDPMMELARRTFIFSSL-TGLAYADTRALHPRHI 265

Query: 182 ---MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
               + +  +R+ + K D    +PL P   + +  Y          +   P+F       
Sbjct: 266 GKTSEGRKYIRVCRAKTDVEAFIPLHPIAEQILELYNT-------TDDDRPVFPLPV--- 315

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
               V    +  +   LG+  + + H  RHSF T +LS+G  + SI  ++GH  +++TQ+
Sbjct: 316 --RDVLWYEVHGMGVALGMKENLSYHMARHSFGTLMLSSGIPIESIAKMMGHTNINSTQV 373

Query: 298 YTNVNSKNGGDWMMEIYDQ 316
           Y  V  +     M ++  +
Sbjct: 374 YAQVTDRKISGDMDQLMKR 392


>gi|261207832|ref|ZP_05922517.1| integrase [Enterococcus faecium TC 6]
 gi|289566384|ref|ZP_06446812.1| transposase [Enterococcus faecium D344SRF]
 gi|83940967|gb|ABC48872.1| integrase [Enterococcus faecium]
 gi|260078215|gb|EEW65921.1| integrase [Enterococcus faecium TC 6]
 gi|289161822|gb|EFD09694.1| transposase [Enterococcus faecium D344SRF]
          Length = 399

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 50/313 (15%), Positives = 106/313 (33%), Gaps = 37/313 (11%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           + + + + T++      RQ   F+    ++     +I  +  ++ + +  +     I   
Sbjct: 95  LRKNIRRNTVKG-----RQ--QFMNVLKKDPFGSMSIDSVKQSDAKEWAIRMSENGIAYN 147

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           S+K  +  +++      +     ++    +     S+ L     EK AL+L     L T 
Sbjct: 148 SIKNYMRSLRASFYMAIQDDYVRKNPFDFV----LSDILDDTRKEKTALSLEQEEALLTF 203

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQ-NIMDDQSTLRIQG------------- 192
            ++     +    L +L   GLRISE   L     +     ++ ++              
Sbjct: 204 AKSDRTYKKYYDELVILLETGLRISEFCGLDLNVAVDMKNKSILVEHQLLKDTETGYYIE 263

Query: 193 ---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIRGKPLNPGVFQRY 246
                  IR +P+      A             +        L    +G P     +   
Sbjct: 264 KPKTKSGIREIPMTDKAYDAFQRLIKSRKKTEPIVIDGYSNFLMLNGKGLPQVASSYNMV 323

Query: 247 IRQLRRYLGLPLS-----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTN 300
           ++ L +             + H+LRH+F T + + G    ++Q I+GH  +S T   Y +
Sbjct: 324 LKGLVKKYNKTHDDELPEISPHSLRHTFCTKMANKGMTPNTLQYIMGHSDISMTLNYYAH 383

Query: 301 VNSKNGGDWMMEI 313
            +  +    M  I
Sbjct: 384 GSFGSAKAEMERI 396


>gi|331092498|ref|ZP_08341320.1| transposase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330400719|gb|EGG80322.1| transposase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 397

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 55/298 (18%), Positives = 102/298 (34%), Gaps = 34/298 (11%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           +Q    +    E+K+  ++I  +  ++ + +  + + +     ++      +K+      
Sbjct: 104 KQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMKDKGFSYNTINNHKRSLKASFYIAI 163

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           +     +       + K S  L     EK ALT      L +  +T  +  +    + +L
Sbjct: 164 QDDCVRKKPF----DFKLSEVLENDTKEKVALTEEQEQALLSFIKTDNVYHKYYDDVLIL 219

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVR 207
              GLRISE   LT  ++      + I                       R VPL     
Sbjct: 220 LKTGLRISELCGLTIMDVDFIHEVVVIDHQLLKSKEQGYYIETPKTKSGTRQVPLSKETI 279

Query: 208 KAILEYYDLCPFDLNL---NIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGL 256
           +A        P             LF   +GKP        L   + ++Y +  +     
Sbjct: 280 RAFQRVMKKRPKAEPFVIDGRGNFLFVNHKGKPKVAIDYNMLFVRMVKKYNKHHKD--NP 337

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
               T HTLRH+F T L S   + + +Q I+GH  +S T   Y + +       +  +
Sbjct: 338 LPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQRL 395


>gi|315035524|gb|EFT47456.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0027]
          Length = 389

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 61/339 (17%), Positives = 123/339 (36%), Gaps = 53/339 (15%)

Query: 7   PEIVSFELLKERQNWLQNLEI-ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           P+++ ++ L      L  LE+ ++ ++  T   Y+           F+  +KI +  ++ 
Sbjct: 69  PDLLFYDYL------LNYLEVSKKQVAFNTYVGYKHYVHN--RIYKFFYPKKIKLNRLKP 120

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
                ++ F            ++    + I   L+     ++ + +    +R  KK   +
Sbjct: 121 Y---HLQDFYQYMLNDDCTANTVIHYHAFISKALQEAVITELISTNVADKVRKPKKKQFV 177

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
            +  N+ + L L+D             + +   ++ L    GLR SE L L    I    
Sbjct: 178 SQVYNQHEILKLLDI----------LSEEKLYLVVLLTAFYGLRRSEVLGLKWSAIDFLN 227

Query: 186 STLRIQG-------------KGDKIRIVPLLPSV-------------RKAILEYYDLCPF 219
             + I               K D+ +      ++              K   +   L   
Sbjct: 228 KKIMINHVIIENPENMSQLIKKDQTKNSSSYRTLPLVETIERALVNQAKWQQDNRILLGE 287

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
           D  L     +F    G+ + P      + +L +  GL      H LRHS A+ +L +G +
Sbjct: 288 DYILKDSEYVFTMEDGRLMKPQYVTHRLSKLIKKNGL-KKIRFHDLRHSNASIMLDSGQN 346

Query: 280 LRSIQSILGHFRLSTTQ-IYTNVNS---KNGGDWMMEIY 314
           ++SIQ  LGH   STT  +YT++ +   +   + +   +
Sbjct: 347 MKSIQEWLGHASYSTTANLYTHLTAGVKERAAEALENAF 385


>gi|313678343|ref|YP_004056083.1| site-specific recombinase, phage integrase family [Mycoplasma bovis
           PG45]
 gi|312950487|gb|ADR25082.1| site-specific recombinase, phage integrase family [Mycoplasma bovis
           PG45]
          Length = 306

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 105/260 (40%), Gaps = 27/260 (10%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
            + +  + ++SY +I    ++   ++    +       +K  L       + T+     +
Sbjct: 45  NLKLCDLDRVSYQQIINDYAECHERQ----TTMDFHHHLKGCLLDAFDEGLLTKDPTRKV 100

Query: 117 R---NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
                  +   + + L+  +   L+  + L       W       +++L+   GLR SEA
Sbjct: 101 VIKGMPARPKKI-KFLSNFELQLLLKGLNLQDKLNFDW-------LIFLIAKTGLRFSEA 152

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEYYDLCPFD---LNLNI 225
           ++LTP +    +  L +    +       LP     SVRK  L++  +  F      L+ 
Sbjct: 153 VALTPDDFDFTKQLLNVSKTWNYKESGGFLPTKNKSSVRKIQLDWQTISRFASLVQGLDK 212

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
             P+F     + +        + +  +   +P+  + H LRH+ A+ LL  G  + S+  
Sbjct: 213 NKPIFV--FKEKIFNSTINDLLARRCKKANIPI-ISIHGLRHTHASILLYAGVSIASVAK 269

Query: 286 ILGHFRLSTT-QIYTNVNSK 304
            LGH  ++TT QIY ++ ++
Sbjct: 270 RLGHSSMNTTEQIYLHIINE 289


>gi|296165946|ref|ZP_06848412.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295898699|gb|EFG78239.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 647

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 68/319 (21%), Positives = 115/319 (36%), Gaps = 47/319 (14%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI------- 83
           L   +++S   D   F  +L  +  + I+   +R+L  + I  ++   RT+         
Sbjct: 232 LRPKSVESLINDLLPFAEYLTAHHPDVIS---LRELDRSCIEGYLKWNRTRGWRGQRAAA 288

Query: 84  -GDRSLKRSLS-----GIKSFLKYLKKRKITTESN---ILNMRNLKKSNSLPRALNEKQA 134
              R++  +++      +++ L  +             +      K    LPRAL     
Sbjct: 289 GAGRTVSAAVAQSAVLSLRNLLDDITAWGWAQAPPRRLVFAADVPKLDQPLPRALAPD-V 347

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ---NIMDDQSTLRIQ 191
              V N + H       I       L +L G GLR  E L L      +     + L++ 
Sbjct: 348 DAAVMNAVAHLQDPFARIG------LTVLRGAGLRAGELLDLELGSIIDYGPAGTWLKVP 401

Query: 192 -GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN------IQLPLFRGIRGKPLNPGVFQ 244
            GK    R+VPL  +   A+ E+  L      L       +   LF    G+ L     +
Sbjct: 402 LGKLATERMVPLSAATLAALDEWVALRGTHRPLPHPRTGVLTDFLF-TRHGRRLGYTRLR 460

Query: 245 RYIRQLRRYLGLPLS------TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             +       GL          T H LRH++AT L + G  L+++ S+LGH     T  Y
Sbjct: 461 NGLLTAAESAGLHRPDGGVLMVTPHQLRHTWATELANAGMSLQALMSLLGHVTPQMTIRY 520

Query: 299 TNVNSKNGGDWMMEIYDQT 317
             + S      +   YD+ 
Sbjct: 521 ATLAS----PTLRAAYDEA 535


>gi|320007186|gb|ADW02036.1| integrase family protein [Streptomyces flavogriseus ATCC 33331]
          Length = 548

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 103/303 (33%), Gaps = 36/303 (11%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           L   T+  Y    R  LI              + QL+   I AF++ +     G  +L R
Sbjct: 188 LKPSTMARYRDYVRNDLI-------PAFGTLKLDQLANRHIAAFVTSQLAVGCGRTTLYR 240

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L+ + S L    +++    +        +  +   R    ++A   + +          
Sbjct: 241 CLATLSSALGDAVRQQRLPRTPASPPVLHRPPSPERRIWTAEEAARFLTHCHQTDPEMAD 300

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------------- 193
                   +  +L G G+R  EAL L   ++  DQ  L I+                   
Sbjct: 301 --------LFEVLIGTGMRKGEALGLHWNDVHLDQGVLYIRCTLSAVDNNRLVLTTPKTR 352

Query: 194 --GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
                + I P +    +           D +      +F    G+PL P +    + +L 
Sbjct: 353 SSRGWVAISPRVAIAFRHRARSAPRAHGDADDPFAGLVFCRPDGRPLGPHLVLDRLHRLS 412

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWM 310
              G+P   T H LRH  AT  +S G  L  +   L H  LSTT  +Y+++  +     +
Sbjct: 413 EEAGVPQ-VTVHDLRHLAATITISAGVPLTVVSKTLRHSTLSTTANLYSHLTQQAAHQAV 471

Query: 311 MEI 313
             I
Sbjct: 472 DTI 474


>gi|291287002|ref|YP_003503818.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290884162|gb|ADD67862.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 410

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/291 (15%), Positives = 110/291 (37%), Gaps = 25/291 (8%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            E+ +E +  ++ L     L + TL++Y    +  L + A Y  + I        + + +
Sbjct: 87  AEVAEEWKEHVERLHKAGELKRTTLRNYMNSLKSILDYFAIYEMQNI--------TKSLV 138

Query: 72  RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
             +  +   + +  +S+   L+ ++    Y  +      + +  ++N           N+
Sbjct: 139 DDYKFELLDKPLSKKSINNKLTPLRRIFDYAYEMGYIEHNVMDRVKNFTLELPEIEPFNQ 198

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            +   +++++  +             A+  +L+  G+RI E L++  +N  +   +  ++
Sbjct: 199 LEVQAILNHLQKNNPKF--------HAMFTILFHTGMRIGEVLAMKWKNFDEMFCSYHVK 250

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ------LPLFRGIRGKPL--NPGVF 243
               + R+        K I+   D     L  + Q        +F    G P   +  + 
Sbjct: 251 EHFTEKRLDTPKTKASKRIVPLTDEAMKALRNHKQYTFMKSDFIFCNQYGDPWVSSDNIM 310

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           ++    + + LG+      +  RH+ A+  +  G +L  I   +GH  + T
Sbjct: 311 KQVWEPMLKKLGIAYRII-YQCRHTHASLSILAGDNLAHIAERMGHKNVGT 360


>gi|16519923|ref|NP_444043.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
 gi|2497422|sp|P55638|Y4RE_RHISN RecName: Full=Putative integrase/recombinase y4rE
 gi|2182602|gb|AAB92471.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
          Length = 310

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 56/267 (20%), Positives = 94/267 (35%), Gaps = 23/267 (8%)

Query: 46  FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR 105
              F+ +    +      R ++   + +F            S       ++ F +YL   
Sbjct: 33  LRAFVRYVERAQFDAPATRTMALDFVLSF-------GGAANSRATRHGVLRRFYEYLAV- 84

Query: 106 KITTESNILNMRNLKKSNSLP--RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
               ++  L  R   +S ++P  R L+E +  +L+D      S          + ++ LL
Sbjct: 85  -YDAQTEALKRRAFPRSRAIPPPRILSEAELASLIDAC-ARISPGIPLRGLTMATLIGLL 142

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
              GLR  E + L   ++      L ++  K  K R+VP+  + + A+  Y         
Sbjct: 143 ASSGLRSGEVVRLDRSDVDLTNGVLLVRKTKFRKDRLVPVHATTQTALCRYARERDAAFP 202

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT--AHTLRHSFA------THLL 274
                  F   RG  L+    Q    Q+R++ GL    T   H LRH FA       H  
Sbjct: 203 SPKDQAFFLSSRGNRLSATGLQCGFAQVRKFAGLDDGKTLRPHDLRHRFAVTRMSLWHQQ 262

Query: 275 SNGGD--LRSIQSILGHFRLSTTQIYT 299
                  L  + + LGH   S T  Y 
Sbjct: 263 RANVQALLPVLATYLGHANYSDTAYYL 289


>gi|88706575|ref|ZP_01104279.1| integrase [Congregibacter litoralis KT71]
 gi|88699287|gb|EAQ96402.1| integrase [Congregibacter litoralis KT71]
          Length = 440

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 103/297 (34%), Gaps = 41/297 (13%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD----------------RSLKRS-- 91
           +  +    +    + QLS  ++R   S  R  K                    S+ RS  
Sbjct: 131 IKRHLRPLLGPVKVEQLSRDKVRRLFSDIRDGKTATVEKTSKKRGKARVTGGESVARSSV 190

Query: 92  --LSGIKSFLKYLKKRKITTESNILNM------------RNLKKSNSLPRALNEKQALTL 137
             LS I     +  +  + TE+    +               ++  SL  AL+  Q    
Sbjct: 191 KLLSAI---FTWAIEEGLATENPCKGVNVGQSGVREAILETPEQYKSLFDALDRMQV--- 244

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
             N+      E   I    +  + +L   G R SE        +  D  TL +  K  K 
Sbjct: 245 -SNIDPDDPGEVTPIPDAAANAIRVLAFTGARKSEITEARWSWVNIDAGTLTVPPKSHKS 303

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
             +   P V         +            +F   RG      +  +   Q+R+  GLP
Sbjct: 304 GHITGKPKVIPLPSPARAVIESLTRHGEDDFVFPATRGGG-GISLPSKMWIQIRKEAGLP 362

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
              T H+LRHS  T +   G +   I + LGH +LSTTQ Y ++ +++    M+E Y
Sbjct: 363 DGITNHSLRHSLGTIMAVQGAEAAQIMAALGHSQLSTTQRYIHI-ARDARAAMVEKY 418


>gi|331006573|ref|ZP_08329863.1| Integrase [gamma proteobacterium IMCC1989]
 gi|330419606|gb|EGG93982.1| Integrase [gamma proteobacterium IMCC1989]
          Length = 328

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 98/261 (37%), Gaps = 29/261 (11%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNIL 114
           ++++  ++ + +      +  +RR   +   ++      ++S    LK+      ++ + 
Sbjct: 90  DRLSNPSVSEFTSEVFSIY-RQRRLSDVSVSTVNHETRYLRSVFNELKRLGFYYGDNPLA 148

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           N+R   +       L   Q   L+      ++            ++ L    G R SEA 
Sbjct: 149 NIRTFPERQRELSFLTYDQRDELLYQCEQSSNTHCAP-------VVRLCLATGSRWSEAN 201

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
            L   N + D   +    K  K R++P+       +  Y     F  N        R   
Sbjct: 202 GLKASN-LFDNRVIYSDTKNGKQRVIPITSK----LSSYLRSQAFPTNTGRLFDSCRSAF 256

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            K L     +           LP   + H LRH++A+H +  GGD+ ++++ILGH  L  
Sbjct: 257 RKALERTSIE-----------LPQGQSTHVLRHTYASHFVMKGGDILTLKNILGHSDLKV 305

Query: 295 TQIYTNVNSKNGGDWMMEIYD 315
           T  Y +++     D+M +  +
Sbjct: 306 TMRYAHLSP----DYMQQAVE 322


>gi|226349711|ref|YP_002776825.1| putative transposase for insertion sequence element [Rhodococcus
           opacus B4]
 gi|226245626|dbj|BAH55973.1| putative transposase for insertion sequence element [Rhodococcus
           opacus B4]
          Length = 535

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 62/341 (18%), Positives = 112/341 (32%), Gaps = 39/341 (11%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGL-SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           LPE    ++    + +LQ L ++  L    T+ +     R+F+ +L     +   + +  
Sbjct: 96  LPEPCPPKIRAVIERYLQ-LRLDAKLDRPQTVHNARQALRRFVNWLGENHPQ---VSSFA 151

Query: 65  QLSYTEIRAFISKRRTQK-------IGDRSLKRSLSGIKSFLKYLKKRKITTES--NILN 115
           Q+    I  ++    T         +   ++K  L+ I  F +              +L 
Sbjct: 152 QVDRATIEEYMRWLPTCPSQHTGLPLATTTVKHELNAIAGFCRDTAVWGWAEVPGRPLLT 211

Query: 116 MR-NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            R   ++  S+PR L + +   ++  V        +                G R  E  
Sbjct: 212 PRDTPRRPESIPRYLPQHELDAIMTAVDDLADPLQRAALLLLRW-------SGARRDEIR 264

Query: 175 SLTPQNIMDDQST---LRIQ-GKGDKIRIVPLLPSVRKAILE--------YYDLCPFDLN 222
            LT   +         LRI  GKG    IVPL P    A+                 ++ 
Sbjct: 265 RLTWDCLDTYPGGHPRLRIPVGKGRTELIVPLHPDAATALEHATSLARAQRSIARIDEVT 324

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-----PLSTTAHTLRHSFATHLLSNG 277
                 +F           +F    R +    GL       + +AH  RH+  T L   G
Sbjct: 325 GRRVDYVFVRRGKLLSGKTLFDEAFRTVCAATGLVDDRGSPTVSAHRFRHTLGTQLAEGG 384

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
             +++I +ILGH   + + IY+ ++               H
Sbjct: 385 ARIQTIMAILGHRSATMSMIYSRISDPEIRRQYETALADGH 425


>gi|254448625|ref|ZP_05062084.1| integron integrase [gamma proteobacterium HTCC5015]
 gi|198261814|gb|EDY86100.1| integron integrase [gamma proteobacterium HTCC5015]
          Length = 267

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 97/286 (33%), Gaps = 61/286 (21%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           R ++  T ++Y    ++F+ F      E++    + Q        F+S     + +   +
Sbjct: 4   RNMAWATEKTYVFWIKRFIYFHGKRHPEEMGALEVDQ--------FLSHLAIVRGVSPST 55

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
              +L+ +    K L +R    E   L+    K    +P   + ++AL ++ +       
Sbjct: 56  QATALNALVFLYKRLFER----EDLPLDFHRAKPHRRVPEVFSHEEALAIICH------- 104

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
               +      +  L+YG GLR  E L L  +++      L ++ GKG K R   L   +
Sbjct: 105 ----LSGAVRLMANLMYGSGLRTHECLRLRVKDVDFSSRVLFVRQGKGGKDRTTLLPDIL 160

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG------------------------- 241
              +             ++++   R      L                            
Sbjct: 161 VSELRSQIQFVHELHQQDVKVGAGRVWMPYALERKYPNAALETAWQFLFPATHLARDPRS 220

Query: 242 -----------VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
                        Q+ ++Q  R  G+    + HT RHSFAT LL +
Sbjct: 221 GVVRRHHVHHRTLQKAVKQAIRSAGIHKQASCHTFRHSFATRLLES 266


>gi|160875073|ref|YP_001554389.1| integrase family protein [Shewanella baltica OS195]
 gi|160860595|gb|ABX49129.1| integrase family protein [Shewanella baltica OS195]
          Length = 431

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/292 (15%), Positives = 100/292 (34%), Gaps = 43/292 (14%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           +K T ++Y   ++  + +           Q I ++S + +  F +      +  +++   
Sbjct: 108 AKSTSKNYRSKSKHVINYFG-------GDQLISEISRSHLLMFQANMLKAGLSPKTVNDV 160

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
            + ++       +  I   + +  + N+++          ++         L        
Sbjct: 161 FTIVRGVWYVAFEDGIIRSNPLDRISNIERD-------TLEETADPFTRDELERIAADDT 213

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-----------GKGDKIRIV 200
               +  ++      GL +SE ++L  ++I     T+ I+            +  ++R++
Sbjct: 214 SRRGDINMIMFCCWTGLSLSEVIALAWEDIDTVNWTVNIRRARVLTQYKVPKERGRVRVI 273

Query: 201 PLLPSVRKAILEYYDLCPFD---------------LNLNIQLPLFRGIRGKPLNPGVFQR 245
            L+   ++ ++E                        N NI+     G  G P      +R
Sbjct: 274 ELIDPAKEWLIEQMQHTMMLPTIELEVKQRDNITTKNENIRFVFLNGKSGLPWYDHSVRR 333

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +   +     L      +  RH+FA+ LLSN   L  +   LGH    TT I
Sbjct: 334 WFTGILERTKL-RHRGPNQCRHTFASQLLSNYVPLEWVARQLGHSD--TTMI 382


>gi|331672347|ref|ZP_08373138.1| integrase for prophage [Escherichia coli TA280]
 gi|331070542|gb|EGI41906.1| integrase for prophage [Escherichia coli TA280]
          Length = 403

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 91/239 (38%), Gaps = 29/239 (12%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILNMRNLKKSNSLPRALNEK 132
           + S++  +     ++    S + S  + L +    T  + +  MR    +      L  +
Sbjct: 171 YFSEKWKKGASPVTVNLEQSHLSSVFRELSRLGEWTLPNPLEKMRKFTIAEKEMAWLTHE 230

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q + L+ +         K  +   + ++ +    G R  EA++LT   +   + T  ++ 
Sbjct: 231 QIIELLSDC--------KRQNPILALVVKICLSTGARWREAINLTRSQVTKYRITF-VRT 281

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+   + + I+       F                       FQ      + 
Sbjct: 282 KGKKNRSIPISKELYEEIMALDGFNFF-------------------TDCYFQFLSVMEKT 322

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++   +    + 
Sbjct: 323 SIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHLETALR 381


>gi|325977913|ref|YP_004287629.1| phage integrase family site specific recombinase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325177841|emb|CBZ47885.1| phage integrase family site specific recombinase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 385

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 96/280 (34%), Gaps = 38/280 (13%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           I +++  + + FI+    +    R++K+  S       +  K K+  E+ + ++   K+ 
Sbjct: 110 ISKITPWQCQEFIT---EKGKTFRNIKQVKSYTNQVFSFAVKMKLIAENPMRDVTLPKRE 166

Query: 123 NSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
                   N  +    +  V +   ++       N A+  LL   GLR  E  SL   ++
Sbjct: 167 QKQSDNFFNVDELHEFLAIVKVEEPYK-------NYALFRLLAYSGLRKGELYSLRWSDM 219

Query: 182 MDDQSTL-------RIQGK--------GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
             D+  L       RI+GK           +R +PL       + E+      +      
Sbjct: 220 NFDKQILSVTKNLGRIKGKAVEKSTKNRFSVRQIPLDAETTAILREWKQQSKKEKGQLSV 279

Query: 227 LPLFRGIRGK----------PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
            PL                 PL        ++++     L    T H  RH+ AT ++  
Sbjct: 280 TPLIDNDYMFTFVDRDGKIQPLYQDYINSILKRIINKHNL-KKITPHGFRHTHATLMIEV 338

Query: 277 GGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYD 315
           G D  +    LGH     T   Y++     G   + +  D
Sbjct: 339 GVDPVNAAKRLGHASSQMTLDTYSHATEAGGEQTIKKFAD 378


>gi|225018205|ref|ZP_03707397.1| hypothetical protein CLOSTMETH_02143 [Clostridium methylpentosum
           DSM 5476]
 gi|224949002|gb|EEG30211.1| hypothetical protein CLOSTMETH_02143 [Clostridium methylpentosum
           DSM 5476]
          Length = 396

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 49/294 (16%), Positives = 104/294 (35%), Gaps = 30/294 (10%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           RQ+L  +     + + ++ I  +  ++ + +  +   +    +++      +K+      
Sbjct: 107 RQYL--MNVLENDPLGMRAIDTVKQSDAKEWAIRMNGKGYSYKTIDNYKRSLKASFYMAI 164

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           +     ++      + K S+ L      K  LT      L    ET  + ++    + LL
Sbjct: 165 QDDCIRKNPF----HFKLSDVLEDDTEAKVILTPEQEEKLLAFMETDNVYSKYRDEVILL 220

Query: 164 YGCGLRISEALSLTPQNIMDDQ---------------STLRIQGKGDKIRIVPLLPSVRK 208
              GLRISE   LT    M ++                 +      +  R +PL     +
Sbjct: 221 LETGLRISELCGLTTHIDMPNRVINIDHQLLRDTEVGYYISTPKTKNGKRELPLTERAYQ 280

Query: 209 AILEYYDLCPFDLNL---NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS-----T 260
           A+            L        LF    G P   G ++  +R L +             
Sbjct: 281 ALERILKNRGKAQPLVVDGYSNFLFLNSEGLPKVAGNYESMVRGLIKKYNKTHKDKLPNI 340

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
           T H+ RH++ T++ + G +  ++Q I+GH  ++ T   Y +   ++    +  +
Sbjct: 341 TPHSFRHTYCTNMANKGMNPNTLQYIMGHANITMTLGYYAHGTFQSAKAELERL 394


>gi|49482599|ref|YP_039823.1| integrase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|221142677|ref|ZP_03567170.1| putative integrase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|282902955|ref|ZP_06310848.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus C160]
 gi|282907352|ref|ZP_06315200.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|295426904|ref|ZP_06819543.1| integrase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297588884|ref|ZP_06947525.1| prophage L54a [Staphylococcus aureus subsp. aureus MN8]
 gi|49240728|emb|CAG39389.1| putative integrase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282330251|gb|EFB59772.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282597414|gb|EFC02373.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus C160]
 gi|295129356|gb|EFG58983.1| integrase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297577395|gb|EFH96108.1| prophage L54a [Staphylococcus aureus subsp. aureus MN8]
 gi|302750241|gb|ADL64418.1| pathogenicity island protein, integrase [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|315194829|gb|EFU25218.1| putative integrase [Staphylococcus aureus subsp. aureus CGS00]
          Length = 404

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 58/288 (20%), Positives = 111/288 (38%), Gaps = 38/288 (13%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKK 121
           I ++++T ++  I     +      ++  +  I+S  KY  K   +   S +  +   KK
Sbjct: 113 ISKITHTYLQN-IINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKK 171

Query: 122 SNSLPRA-------LNEKQALTLVDNVLLHTSHETKWIDARNS----AILYLLYGCGLRI 170
           + +           L + +   L++       H+      RN     A++      G+RI
Sbjct: 172 AQTRNEFQAKRNNYLEDSEVKELLECFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRI 231

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKI--------------------RIVPLLPS----V 206
            E L++   N+  +  TL I G  + +                    R + L       +
Sbjct: 232 GELLAIKTDNVDVENKTLEIDGTINWVTDVVTGAFGVKETTKTSKSYRTIGLTAQSINLL 291

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           +K +LE      ++     +  +F    G P++       I++      +    T HTLR
Sbjct: 292 KKLMLENKKENQWNDKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLR 351

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           H+  + L   G +L++IQ  +GH    TT +IYT+V  K   D M ++
Sbjct: 352 HTHISTLAQLGINLKAIQERVGHSDYKTTLEIYTHVTDKMAKDMMNKL 399


>gi|310816481|ref|YP_003964445.1| integrase [Ketogulonicigenium vulgare Y25]
 gi|308755216|gb|ADO43145.1| integrase [Ketogulonicigenium vulgare Y25]
          Length = 333

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 88/279 (31%), Gaps = 25/279 (8%)

Query: 37  QSYECD-----TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
            +Y  D         +I                Q++  + R ++ KRR     D +++  
Sbjct: 61  SAYRKDKAGRRIDHHMIDTGKTILPVFGALEPHQITTQDCRDYVEKRRAIGRKDGTIRTE 120

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L  +++ L + +K ++   +   ++      +   R L+  +   L+             
Sbjct: 121 LGHLRTSLSWAEKHRMIEHAP--HIERPAMPSPKERYLSRAEIDRLLSVD---------- 168

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
            D      + L+     R+   L LT   +   +  + ++ +G+  R    +  +   + 
Sbjct: 169 GDPHIRLAILLMLTTAGRVGAILELTWDRVDMIRGQINLRLEGEGPRKGRAVVPINNTLR 228

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
                          +    G        G  +   R      GL    T H LRH+ A 
Sbjct: 229 AALVAAKAHAMSEFVVEYAGGQI------GSIKTGFRNACAKAGL-KGVTPHVLRHTAAV 281

Query: 272 HLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDW 309
           H++  G  +  +   LGH   S T   Y   +  +    
Sbjct: 282 HMVEAGVPILEVAQYLGHSNPSVTFSTYGRFSPDHLRKA 320


>gi|293383666|ref|ZP_06629575.1| prophage LambdaSa03, site-specific recombinase, phage integrase
           family [Enterococcus faecalis R712]
 gi|312906214|ref|ZP_07765226.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|312909560|ref|ZP_07768415.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|291079002|gb|EFE16366.1| prophage LambdaSa03, site-specific recombinase, phage integrase
           family [Enterococcus faecalis R712]
 gi|310627860|gb|EFQ11143.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|311290233|gb|EFQ68789.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
          Length = 434

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 117/330 (35%), Gaps = 48/330 (14%)

Query: 18  RQNWLQNLEIERGLS--KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            +N L +   +  LS  K ++++Y    +     +            IR       + FI
Sbjct: 121 LENLLNSWWQQHQLSIRKTSVKAYGKILKYIFSNMNVDVL-------IRNTDTKFFQDFI 173

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-------PRA 128
           +            K+  S +     Y +   +  E+ I  ++ +K   +         + 
Sbjct: 174 NDL---PHSWEYKKKFKSVLNMSFTYAQDMGMIDENPINRVKVVKPPLTKENFENIESKY 230

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L EK+   L++         + +    +  +   +Y  GLR  EA+SLT  + + ++  +
Sbjct: 231 LEEKEVYQLLNYYY------STFQSVHHGRLAEFMYLTGLRAGEAISLTINDYVKNEHAI 284

Query: 189 RIQGKGDKI-----------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            + G  D                   R V L     K I E                LF 
Sbjct: 285 LVNGTLDYSNGYKNATKELPKTLASFRKVELSNRAVKIIEELILEREIKFKEQTN-YLFV 343

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLG---LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           G  G+P+    F   +++    LG   +  + ++H  RHS  + L      +++I   +G
Sbjct: 344 GKTGRPIQVNSFNASLKKANESLGKNKINKTISSHIFRHSHISLLAELNVPVKAIMERVG 403

Query: 289 HFRLSTT-QIYTNVNSKNGGDWMMEIYDQT 317
           H    TT +IYT+V  K     ++E  ++ 
Sbjct: 404 HVDTETTLKIYTHVT-KKAKTNLVEALNKY 432


>gi|189465784|ref|ZP_03014569.1| hypothetical protein BACINT_02145 [Bacteroides intestinalis DSM
           17393]
 gi|189434048|gb|EDV03033.1| hypothetical protein BACINT_02145 [Bacteroides intestinalis DSM
           17393]
          Length = 407

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 58/315 (18%), Positives = 114/315 (36%), Gaps = 37/315 (11%)

Query: 14  LLKERQNWLQNLE------IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           LL   + ++++ E       E+G    T QSY         F+      K++      L+
Sbjct: 109 LLGYFRTFIEHFEKRVGVNREKG----TAQSYRYACNCVAAFIQEKY--KLSDVPFTALN 162

Query: 68  YTEIRAFISKRRTQKI-GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
            + I  +    RT++     ++   ++ + + +       I T          +      
Sbjct: 163 RSFIDNYDLYLRTERRFALGTIVLLVTRLNTIVGEAIAEGIITADPFAGYEA-EHPEREQ 221

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQ 185
           + L   +   L+   L    H+ K    R+  +       G+   +   LT ++  + + 
Sbjct: 222 KYLTAAELQRLMTTPL----HDPKLYHIRDLFLFSC--YTGIPYGDMCRLTTEDLEVAED 275

Query: 186 STLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
             + I   + K      VPLL      + +Y D+ P             G      +   
Sbjct: 276 GEVWIKTARKKTKIDYEVPLLDIPLLILDKYRDMAPE------------GKLLPMYSNNE 323

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             R ++++    G+      H  RH++AT + LS+G  L ++  +LGH R+STTQIY  V
Sbjct: 324 LNRTLKRIAAICGIERKLVFHCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYAKV 383

Query: 302 NSKNGGDWMMEIYDQ 316
                      + ++
Sbjct: 384 TDDKIDMDTRSLEEK 398


>gi|186687030|ref|YP_001870419.1| integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186469654|gb|ACC85451.1| integrase family protein [Nostoc punctiforme PCC 73102]
          Length = 200

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 76/193 (39%), Gaps = 13/193 (6%)

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA--- 173
           R   K       L   +  +L+D  L            R+  ++ L++  GLR+ EA   
Sbjct: 8   RLPNKHYRSREYLTPSEVRSLLDAAL----DRKARYSHRDYTLMLLMFRHGLRVGEAVGA 63

Query: 174 -LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
              L    +M  +  + I  +      V  L      +L+       D        +F  
Sbjct: 64  KCGLRWDAVMWGERQIFITREKGSDSGVHPLRDDELVLLKELREMLPDSK-----YIFVS 118

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
            RG+ ++    ++ + +L    GL +    H +RH+   +L++ G + R IQ  LGH  +
Sbjct: 119 ERGEVMSTDAVRKLLGRLAAQAGLDIKVHCHMMRHACGYYLVNQGYNTREIQDFLGHRDI 178

Query: 293 STTQIYTNVNSKN 305
             T+ YT +N++ 
Sbjct: 179 KHTEKYTKLNARR 191


>gi|317055534|ref|YP_004104001.1| integrase family protein [Ruminococcus albus 7]
 gi|317057167|ref|YP_004105634.1| integrase family protein [Ruminococcus albus 7]
 gi|319788795|ref|YP_004090110.1| integrase family protein [Ruminococcus albus 7]
 gi|319788839|ref|YP_004090154.1| integrase family protein [Ruminococcus albus 7]
 gi|315447803|gb|ADU21367.1| integrase family protein [Ruminococcus albus 7]
 gi|315449436|gb|ADU23000.1| integrase family protein [Ruminococcus albus 7]
 gi|315450662|gb|ADU24224.1| integrase family protein [Ruminococcus albus 7]
 gi|315450706|gb|ADU24268.1| integrase family protein [Ruminococcus albus 7]
          Length = 326

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 55/285 (19%), Positives = 109/285 (38%), Gaps = 28/285 (9%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102
            R+    L  Y E  I+ Q + +L     R  +S+   Q +           ++ F  +L
Sbjct: 41  LRKLNNSLNTYYEHHISDQMVEELLAP--RDGLSELERQYLTAN--------LRQFCSFL 90

Query: 103 KKRKITTES-NILNMRNLKKSNSLPRALNEKQALTL-VDNVLLHTSHETKWIDARNSAIL 160
               I         MR +K     P   ++ +   L +    L  S ++         ++
Sbjct: 91  ALLGIDAVIVPRKYMRTVKSEFR-PYIFSDDELRRLTIAADTLPASRKSSSHQQIYPVLV 149

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
            LL G G+RI E L+L   N+      +  I GK    R +P+  S+++ + +Y      
Sbjct: 150 RLLIGTGMRIGEVLALKRANVDTSNGVINVINGKNGVSRFIPVSDSLKEVLFDY--AKTI 207

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL--STTA--HTLRHSFAT---- 271
           D++   +        G  L     +    ++ +  G+      T   H++RH+F T    
Sbjct: 208 DMSDENRPFFTSSYTGGHLTYDAMKYMFPKMFKTAGIHKSDGKTPNIHSIRHTFCTKSLE 267

Query: 272 HLLSNGGDLRS----IQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            +L NG ++ +    + + +GH     T+ Y +   +   D++ +
Sbjct: 268 KMLENGMNVYTAIPILAAYVGHVNYIDTEKYIHFTEQGHTDFLQK 312


>gi|265763422|ref|ZP_06091990.1| integrase [Bacteroides sp. 2_1_16]
 gi|263256030|gb|EEZ27376.1| integrase [Bacteroides sp. 2_1_16]
          Length = 372

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 60/298 (20%), Positives = 112/298 (37%), Gaps = 29/298 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L   +  + L K   +        F       + E+I +    +     + A   +R 
Sbjct: 94  DFLAYYK--KTLRKHDQKWEFVYLHFFNFVGGKCSFEEIDVDLCNKFREYLLNAKQLRRP 151

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + I   S     S  + FLK L + K+   +    +  ++  + +   L+  +   L +
Sbjct: 152 ERPISRNSAVGYWSTFRGFLKILYRNKLIHSNVNDFLEKIEPEDVVKDYLSVDELYRLAE 211

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----DQSTLRIQGKGD 195
                     K    + +++   L    LRIS+ L+L  + I+D     +    +  K  
Sbjct: 212 T-------PCKIPVLKTASLFSCL--TSLRISDILTLRWEEIVDFAAGGKCVHTVTQKTK 262

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
              I+P+     + I                 P   G+  K L     Q  +++  R  G
Sbjct: 263 TEDIIPISDEALQLI--------------GYSPEKTGLVFKGLKRCWTQYPMKEWIRAAG 308

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +  + T H+ R +FAT   + G D+R+IQSI+ H  ++TTQ Y  V   N      +I
Sbjct: 309 ITKNITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYMKVVDSNKRKASNKI 366


>gi|315143721|gb|EFT87737.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2141]
          Length = 389

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 60/320 (18%), Positives = 122/320 (38%), Gaps = 41/320 (12%)

Query: 18  RQNWLQNLEIERG---LSKLTLQSYECDT-RQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
            +N+  N+  +     L   T++ Y     ++FL  L      +I    I+ +    + A
Sbjct: 69  FENFYNNMWKKEAKTILEPRTIREYSDIIDKRFLPSLKNKKMREIKPFQIKDI---VLAA 125

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLK---KSNSLPRAL 129
               +R++ +  ++ KR L+ + S     + + +I T + + ++R  K   K    P+  
Sbjct: 126 TPLSKRSETLSRKTKKRFLNALSSVFSVARDQYRIITHNPVADVRLPKESVKKKGTPQPY 185

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           + ++   ++D +  H + +TK       A++   +  G R  E  +L   +      T++
Sbjct: 186 SIEEVRLMLDALEEHANLKTK-------ALVMTAFITGAREGEIAALEESDFDFTAMTVQ 238

Query: 190 IQGK------GDKIRIVPLLPSVRKAI---LEYYDLCPFDLNLN-----------IQLPL 229
              +          R   L  S  K I     Y ++    + +N               +
Sbjct: 239 FHQRIVLDENKKYQRRDGLKASESKTIPVPQSYLEIMEGFMAINQTARKELRIDPKHKYV 298

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILG 288
           F    G    P    R   +  +  GL      H LRH+ A+ LL++    ++++Q +LG
Sbjct: 299 FGSPDGNFELPTSLYRNWNRFIKRAGL-RQIRFHDLRHTSASFLLADPTIPIKTVQELLG 357

Query: 289 HFRLSTTQ-IYTNVNSKNGG 307
           H    TT  IY +   +   
Sbjct: 358 HKDYRTTMNIYGHALEETKR 377


>gi|257084635|ref|ZP_05578996.1| phage integrase [Enterococcus faecalis Fly1]
 gi|256992665|gb|EEU79967.1| phage integrase [Enterococcus faecalis Fly1]
          Length = 377

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/287 (15%), Positives = 108/287 (37%), Gaps = 37/287 (12%)

Query: 48  IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI 107
            F+  +    I    +  ++  + +  +++   Q     +  R ++     ++Y +  +I
Sbjct: 95  RFVERHVLPYIGDCLLSDITVIQCQDLVNEWFNQGYKQYTYFRKVTA--QIMRYAEAMEI 152

Query: 108 TTESNI---LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLY 164
              + +   +  +  K+   L +   +++ +     +        ++ + +  A   LL 
Sbjct: 153 MLSNPMSKTILPKRPKEEEKL-KYYTKEELMHFFKCL-------KEFGNFKQLAFFRLLA 204

Query: 165 GCGLRISEALSLTPQNIM----------------DDQSTLRIQGKGDKIRIVPLLPSVRK 208
             G R SE LSL  +++                 D+   ++        R + L     +
Sbjct: 205 FTGCRKSEILSLQWKDLDLINKSVSIGKTLALDEDNNVIIQTPKTESSNRSISLDDETVR 264

Query: 209 AILEYYDLCPFDLN------LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            + ++  +   D         + +  +F   R +   P V   +++ L +   LP+  T 
Sbjct: 265 IMTKWRTIQRSDYFQMGFNTSSEEQYIFTNDRNELYYPQVVNDWLKYLIKKYKLPI-ITP 323

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
           H  RH+ A+ LL +G  ++ +   LGH   + T +IY++V  +    
Sbjct: 324 HHFRHTHASLLLQSGVPMKEVSERLGHKDTTITDRIYSHVMPEEKEK 370


>gi|187251397|ref|YP_001875879.1| integrase family protein [Elusimicrobium minutum Pei191]
 gi|186971557|gb|ACC98542.1| Integrase family protein [Elusimicrobium minutum Pei191]
          Length = 355

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 64/285 (22%), Positives = 106/285 (37%), Gaps = 28/285 (9%)

Query: 31  LSKLTL-QSYECD-----------TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           L + TL  +Y  D           T++F+          I  + +  +    +  F+S+ 
Sbjct: 65  LKEKTLWGAYCRDYTDKYSIQDKTTKRFVNKAIEDFNRIIAPKYLIDIDEKSVSKFVSEM 124

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-PRALNEKQALTL 137
             +  G  S+ R    I   L+            I +    K S  L P+   ++    L
Sbjct: 125 DKEGRGKYSINRERRVIIKMLR--------EAEEIKDYNYPKHSWKLVPKF--KEAKGRL 174

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           +     H     K  D+   A + L    G+R+ E       ++  D+  + +Q K + I
Sbjct: 175 IKYSKDHLKKLYKNADSMLKAAIMLGSYAGMRVEEVFQAEWTDVNWDRGVIYVQKKENYI 234

Query: 198 RIVPLLPS--VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
                     + K + +Y  L     + N  +  F+     P  P V     R+L   LG
Sbjct: 235 PKDYEDREIPLLKPLRQYL-LKNKGSSKNTHIVAFK-DGSSPKTPEVISALFRRLAHELG 292

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           +P  T  H LRH+F +     G D  SIQ  +GH +L TT IY +
Sbjct: 293 IPY-TKFHLLRHNFGSFSAEQGIDPFSIQKAMGHSKLETTMIYIH 336


>gi|168702311|ref|ZP_02734588.1| codV [Gemmata obscuriglobus UQM 2246]
          Length = 345

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 59/309 (19%), Positives = 116/309 (37%), Gaps = 47/309 (15%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +    +L   ++ R     T+  YE D   F+        +  T++   Q++   IR 
Sbjct: 61  LPQAFAQFLVACKLSRK--PNTVARYEYDAGDFVN-------DHPTLEP-AQVTADHIRQ 110

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL-NEK 132
           +++      +G  +    L  + +F  +L K     ++ +  +   K ++   +AL +E 
Sbjct: 111 WLADL---DVGQTTKAIMLRSVSAFFGWLVKEDKLEKNPVKKVTRPKTASRSDKALISEA 167

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L++                   +L +L+G G R  E   +T +        + I  
Sbjct: 168 DHKRLLEGASRDFRD-----------VLVVLHGTGCRPGELQQITAETFNYKDRVVVITE 216

Query: 193 KG----DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
                  K R V L P +   +          L      PL RG +G P         ++
Sbjct: 217 HKTDHTGKPRPVYLTPELADLL-------HSKLVKYPTGPLLRGNKGVPWTGRAITESMK 269

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI----YTNVNSK 304
           +LR+  G+     A+  RH+F T  L +G     + +++GH   +TT +    Y+++ + 
Sbjct: 270 KLRKKTGV--KAIAYGYRHTFVTDGLKSGLSNSQVAALVGH---TTTAVIDRFYSHLGA- 323

Query: 305 NGGDWMMEI 313
             GD +   
Sbjct: 324 -AGDALRAA 331


>gi|319939013|ref|ZP_08013377.1| phage family integrase [Streptococcus anginosus 1_2_62CV]
 gi|319812063|gb|EFW08329.1| phage family integrase [Streptococcus anginosus 1_2_62CV]
          Length = 307

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 84/214 (39%), Gaps = 24/214 (11%)

Query: 103 KKRKITTESNILNMR---NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
                        +       +     + LN+ +   L+ ++ L       W       +
Sbjct: 89  VDEGYIQRDPTRKVIFKGKPPRPKKA-KYLNQYELHNLLSDLKLTNEINWDW-------L 140

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEYY 214
           + L+   GLR SEAL LTP +      T+ +    D        P     S+RK  +++ 
Sbjct: 141 ILLIAKTGLRFSEALGLTPDDFDFIHQTISVNKTWDYKNHTGFQPTKNRSSIRKVQIDWQ 200

Query: 215 DLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
               F     ++    P+F         P    +++ +  + +G+P+  + H LRH+ A+
Sbjct: 201 VGMQFQQLVKSIEHDEPIFATDTICNSTPN---KWLERHCKKIGIPV-ISIHGLRHTHAS 256

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
            L+  G  + S+   LGH  ++TTQ +Y ++  +
Sbjct: 257 LLMFAGVSIASVSRRLGHSSMTTTQKVYMHIIQE 290


>gi|315033819|gb|EFT45751.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0017]
          Length = 408

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 53/318 (16%), Positives = 104/318 (32%), Gaps = 46/318 (14%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR--------RTQKIGDRSLKR 90
           Y    R ++          I    + +    + + FI+              +   ++K 
Sbjct: 94  YRDAIRMYIDPY-------IGNYQLNKYKPADHQKFINSLFTNKELGKNKNGLSYNTVKI 146

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
             + + +  K  +K      +    +              +K     ++   L       
Sbjct: 147 VNAALSNAFKKAQKLGYVKSNPTYLVEFPLDKVKEKTNKEKKLEFYTLEQENLFLDTARN 206

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-----RIQGKGDK--------- 196
           + +        +++  GLR  E ++L   N     + L     R+  K            
Sbjct: 207 FDEYMWYVFFLIIFDLGLRKGEVMALRWFNFDFRDNILTFDKQRLYRKERPGQVILDDVK 266

Query: 197 ----IRIVPLLPSVRKAILEYYDLCP------FDLNLNIQLPLFRGIRGK----PLNPGV 242
                R + +   VR ++LE Y +          +  + Q  LF   RGK    P+    
Sbjct: 267 TDAGKRSLKMTNRVRNSVLELYSINYDLTSNVLPMTNSNQDFLFINHRGKNVGLPIRQRS 326

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                 ++ +   LP     H  RH+ A  L   G  L  I+ +LGH  + TT+IY +V+
Sbjct: 327 VDTAWHRIIQKANLPK-IRIHDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVS 385

Query: 303 SKNGGDWM--MEIYDQTH 318
           ++     +  +E+Y   H
Sbjct: 386 AEVKERAVNKLELYQMQH 403


>gi|261879700|ref|ZP_06006127.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270333721|gb|EFA44507.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 422

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 109/277 (39%), Gaps = 26/277 (9%)

Query: 50  LAFYTEEKITIQTIR--QLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRK 106
           +  Y  E++ ++ IR   L Y  I       ++++ +   +++ ++  ++  +   +++K
Sbjct: 144 IEAYLRERLGLEDIRYSSLDYGFIEGLDFYLKSERNLSLATIQVAVIFLRKLIGIGQQKK 203

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
                   + +  ++ +   R L  ++   ++   ++    E          +       
Sbjct: 204 YIRIDPFADYKA-EQPHRTRRYLTTEELQRILQTPIIDKQFERA------RQLFLFCAFT 256

Query: 167 GLRISEALSLTPQNIM---DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           GL   +   L P++I+   D    +RI + K D   I+PLLP  ++ +  Y        N
Sbjct: 257 GLARVDMQRLKPKHIIRNADGTEEIRIKRQKTDVEAIIPLLPIAKQILSLYI------KN 310

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLR 281
                 +F       L           + +   +    T H  RH+F+T   LSNG  + 
Sbjct: 311 KKADDLIFPN-----LTIRKASFACVNIGQICRIEKGLTFHMARHTFSTTICLSNGISME 365

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           ++  +LGH  + TTQIY  +      + M  + D+ H
Sbjct: 366 TLSKMLGHSNIGTTQIYGKITDHKIQEDMTALTDREH 402


>gi|325677719|ref|ZP_08157370.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324110585|gb|EGC04750.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 362

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 50/305 (16%), Positives = 113/305 (37%), Gaps = 32/305 (10%)

Query: 21  WLQNL-EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           +++ L  +   + + TL +Y             +   +        L+  +I AFI+++ 
Sbjct: 69  YVEWLNAVVNRVKESTLANYRN-------KFEKHILPEFGDVPCADLTAGKINAFINQKL 121

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +    ++   +  K+ LKY +       S + ++   K +      +++ +   LV 
Sbjct: 122 ADGLSASYVRDIFTVFKTMLKYAQDEYGFKLS-LKSVVLPKAARKQIEKISDTEQKKLVS 180

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI-- 197
            +  + S             + L    GLRI E   L  +++      L I+    +I  
Sbjct: 181 YLKSNMSLTAFG--------ILLSLFMGLRIGELCGLKWEDVDFRNKILHIRRTVQRISS 232

Query: 198 ----RIVPLLPSV-------RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
               R   ++ S        R+  +    +  F++  +           KP+ P   Q  
Sbjct: 233 ANGNRKTKIVISAPKSATSFREIAIPDMLMKYFEMFRDEADYFIISGTNKPVEPRTMQYR 292

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKN 305
            +++ +   +      H LRH+FAT+    G +++++ ++LGH  ++ T   Y + +   
Sbjct: 293 YKKILQSAEVEDH-NYHKLRHTFATNSAEKGFNVKALSAVLGHSSVTLTLNRYIHPDRTY 351

Query: 306 GGDWM 310
               M
Sbjct: 352 ERRLM 356


>gi|303236450|ref|ZP_07323037.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483301|gb|EFL46309.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 404

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 55/286 (19%), Positives = 105/286 (36%), Gaps = 23/286 (8%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSLKRSLS 93
           ++ SY         F+      K++     QL+   I  F           + S     +
Sbjct: 128 SMASYHSTRIHLQEFIQKKY--KVSDLAFSQLTENFIHEFQQYFLGECGFQESSFYNVAT 185

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            +K+  +   +  +        ++  K +  LP+AL+      L    L     E +   
Sbjct: 186 HLKTVCRQAYREGVADILLFDKVKISKGNKKLPKALDRGAFEKL--KTLHFEELEEEMET 243

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           AR+  I       G    + + L   +++ DD+ +L ++    K  +   +  + +AI  
Sbjct: 244 ARD--IFLFACYTGAAYCDLMELDKSHLVRDDEGSLWLKFNRQKTGVPCRVKLLPEAIR- 300

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                         LP         +    +Q Y++ LR   G+    T HT RH+FAT 
Sbjct: 301 -LMEKLHSDERETLLPF--------MGYATYQSYLKALRLRAGISFPFTTHTARHTFATL 351

Query: 273 L-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           + L  G  + ++  +LGH  +S T+ Y  V  +     + E +D+ 
Sbjct: 352 ITLEQGVPIETVSKMLGHSNVSMTECYAKVTPQ----KLFEEFDRF 393


>gi|319901057|ref|YP_004160785.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319416088|gb|ADV43199.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 392

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 59/277 (21%), Positives = 113/277 (40%), Gaps = 30/277 (10%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           L K T +++         F            T  +L++  I +F    + +     ++ +
Sbjct: 120 LKKSTKKNHLSTLALLQEFKKDV--------TFSELTFEFISSFEHFLQLKGYHTNTVAK 171

Query: 91  SLSGIKSFL------KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            +  +K ++      +Y+  ++       + M   K ++ +P  L++ + L L       
Sbjct: 172 HMKHLKKYINVAINKEYMSMQQYAFRKYKIRMVENKHTHLIPEELDKLEKLDL------- 224

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
           T   TK+    + A L+  Y  G+R S+ +SL P NI++    + +  K  K      LP
Sbjct: 225 TGKNTKYQKTLD-AFLFCCYA-GMRYSDFISLMPNNIVEINKEIWLVYKSVKTNTEVRLP 282

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
                   Y       +++  +            +     + +  L R  G+    + HT
Sbjct: 283 L-------YLLFGGKGIDILRKYWDNIQAFFHIKDNSNANKDLIILARLAGISKKISFHT 335

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            RH+ AT L+ NG ++ ++Q +LGH  + TTQIYTNV
Sbjct: 336 ARHTNATLLIYNGVNITTVQKLLGHKSVKTTQIYTNV 372


>gi|297565613|ref|YP_003684585.1| integrase family protein [Meiothermus silvanus DSM 9946]
 gi|296850062|gb|ADH63077.1| integrase family protein [Meiothermus silvanus DSM 9946]
          Length = 387

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 48/349 (13%), Positives = 114/349 (32%), Gaps = 46/349 (13%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N LP+     L +  + WL    +E  +   T   Y+    +     A      I +Q +
Sbjct: 53  NLLPDPDRITLKEFCERWLT--SVEHRVKPTTHYGYKVALEK----HAIPILGDIAVQRL 106

Query: 64  RQLSYTEIRAFISKRRT--------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           + L  T + A + K+R         + +   +++     + + L+   +  +   +    
Sbjct: 107 QPLHLTHLYADLLKKRIHPNDPKRLKTLSPTTVRLVHRTLHAALEDAVRWGLLPWNPADR 166

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           ++  +           ++    +           +   +R  A+ +L    G+R  E L 
Sbjct: 167 VKPPQAPRYTGEVWTPEEVWRFL----------AEAQHSRLYALFFLALMTGMRRGELLG 216

Query: 176 LTPQNIMDDQSTLRIQ---------------GKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           L   +I   +  + ++                     R V +   V + + ++ +    D
Sbjct: 217 LKWADIDWQEGAIWVRQNLTKAGSKRVVQSPKTYRSSRPVDVSSDVLEVLQQHREQQEKD 276

Query: 221 L-----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
                     +  +F    G P+ P   +R    + +   +      H LR +  + L  
Sbjct: 277 RLGIGDAWTDEGWVFTTSVGTPIEPSNLRREFLAIIKRAKV-KEIRFHDLRDTHVSLLAL 335

Query: 276 NGGDLRSIQSILGHFRLSTTQI-YTNVNSKNGGDWMMEIYDQTHPSITQ 323
            G D + +   +GH  ++ TQ  Y ++         + + +   P   +
Sbjct: 336 AGVDPKVVSERVGHASVAFTQQTYQHLFRAQRKKAALAVGELLGPREDR 384


>gi|255100622|ref|ZP_05329599.1| integrase/recombinase [Clostridium difficile QCD-63q42]
          Length = 405

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 106/254 (41%), Gaps = 14/254 (5%)

Query: 59  TIQTIRQLSYTEIRAFISK--RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
            I +  Q+  + IR ++    +R       ++KR    +K    YL +  IT  S    +
Sbjct: 145 GIGSFAQVDDSIIRKYLMDCSKRMTLNSIDTIKR---SLKKLHLYLYEIGITGSSFADTL 201

Query: 117 RNL-KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
             +    + + + +   +   ++D +       +  +  R+ A++      G+R  + ++
Sbjct: 202 SFVTPTEHKVKKPVPLDEIAAVLDVI-----DRSTAMGKRDYAMIMTAAVTGIRSVDIIN 256

Query: 176 LTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           LT   I      +RI Q K  K   +PL   V +AI +Y        +L   + L     
Sbjct: 257 LTFDAIDWINGEIRITQRKTGKTLALPLTTDVGEAIQDYILNGRPKSDL-PFVFLRAKSP 315

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              L   +  +     R+ LGLP   T H LR +  T+++ +G  + ++  +LGH  +  
Sbjct: 316 AVQLGRTLPYQTFNVYRKKLGLPK-CTFHGLRRAVGTNMVISGVPVTTVSQVLGHSSIEP 374

Query: 295 TQIYTNVNSKNGGD 308
           T+ Y +++S +  +
Sbjct: 375 TKQYISLDSTHLKE 388


>gi|307289375|ref|ZP_07569329.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0109]
 gi|306499630|gb|EFM68993.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0109]
          Length = 378

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 50/309 (16%), Positives = 117/309 (37%), Gaps = 38/309 (12%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S++T + Y+        ++            + QL+    + +++K   + +   ++ + 
Sbjct: 79  SEITYRKYKDTLNNIERYMPNII--------LSQLTRPLYQRYLNKFAEEHMK-STVIKF 129

Query: 92  LSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLP--RALNEKQALTLVDNVLLHTSHE 148
            + I++ LK   +  +         +   K+S+     + L+      L++  L     +
Sbjct: 130 NNHIRASLKDAVEEGLILFDPTRKAVIKGKESDKTKNDKFLDYGDFKRLME--LAEKGID 187

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK------------ 196
             +       ++ +    G+R +E L  T  +I  +   + I    +             
Sbjct: 188 PHYASPI---MVVVAGATGMRFAELLGTTWNDINFEDEIIDIHKTWNYKMNCWGKTKNES 244

Query: 197 -IRIVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            +R + +     + + EY        +     N +  +F   +   ++     +Y+R+  
Sbjct: 245 SVRKIKIDFHTAQLLKEYKKAQKELFDKLEVQNPEQFIFYNSQNGLISNNAVTKYLRKKL 304

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK--NGGD 308
             +G+    T H LRH+ A+ LL  G D   +   LGH  L TT   Y ++  +  N  D
Sbjct: 305 SEIGVTKKFTLHGLRHTHASVLLYQGCDTIYVSKRLGHSSLDTTITTYLHIIKELDNKND 364

Query: 309 WMME-IYDQ 316
            M++ ++D+
Sbjct: 365 EMIDSVFDK 373


>gi|228963415|ref|ZP_04124576.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228796309|gb|EEM43756.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 375

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 49/313 (15%), Positives = 108/313 (34%), Gaps = 38/313 (12%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           +  L +  Q WL+N   +R +   T  +Y       +I +       I    ++ L    
Sbjct: 63  NLTLSEYLQEWLENTAKQR-VRDTTFINYRRAVNSRIIPV-------IGSHKLKDLKPLH 114

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
            + F+     +++  + ++     +K  L+   K ++  ++   ++   +    +    +
Sbjct: 115 GQRFVKSLIDEELSPKYIEYIFIVLKGALEDAVKWELLYKNPFEHVEIPRPRKVVNNTWS 174

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            ++  T +           K+ +     +  L    G+R  E L L  +N+   +  + +
Sbjct: 175 IEETKTFLTY--------AKFDNPIYYHLFLLALNTGMRRGELLGLKWKNVDLVEGKISV 226

Query: 191 Q---------------GKGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLF 230
                                 R++ +  S+ K +  Y                    +F
Sbjct: 227 TETLIYDELGFRFTEPKTAGSKRLISIDQSLCKELKSYKAKQNEFKLAIGKAYEDNDLVF 286

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
               G+P+ P        +  +   +P     H LRH+ AT LL  G + + +   LGH 
Sbjct: 287 SREDGRPIYPRTLTTVFERFIKTAQVPK-IRFHDLRHTHATLLLKLGINPKIVSERLGHN 345

Query: 291 RLSTT-QIYTNVN 302
            + TT   Y++V 
Sbjct: 346 SIKTTLDTYSHVT 358


>gi|309702155|emb|CBJ01470.1| putative phage integrase [Escherichia coli ETEC H10407]
          Length = 399

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 114/278 (41%), Gaps = 25/278 (8%)

Query: 37  QSYECDTRQFLIFLAFYTEE----KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           +S++ D ++F  ++     +     +  + I+Q+ +  +     +   Q+    +  R+L
Sbjct: 121 KSWDKDVQRFTQYIEPRLGKIRYCDLRAREIQQVLFDMLEG---RIHGQQYAPSTCNRAL 177

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           + +K+  +Y  ++ +  ++    +  LK++N   R  +  +   ++D     T +  K  
Sbjct: 178 AILKTMGRYALRQDVLEKNEADKIPLLKENNQRTRFFDADEIRRILD---AATQYPNKAA 234

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
                 ++ +L   G R SE L++  ++I     TL I    +       L     +I++
Sbjct: 235 GG----LIAMLLLTGTRKSEMLNVRHEHIDRANRTLFIPYTKNGRSRTVYLSDAALSIID 290

Query: 213 YYDLCPFDLNLNIQLPLF-RGIRGKPLNPGVFQRYIRQLRRYLGLPLS-TTAHTLRHSFA 270
                     +     LF     GKP++    +    ++    G+  +    HT RHS A
Sbjct: 291 AIP------RVGSNPYLFAIKDNGKPISEP--RWAYEKILAQCGIDKNEVCFHTTRHSVA 342

Query: 271 THLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           + L+S+G   L  +++ L H  + +T+ Y  +  +   
Sbjct: 343 SLLVSSGQFSLYDVKAQLAHASIQSTERYAKLTPERMR 380


>gi|325678329|ref|ZP_08157952.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324109971|gb|EGC04164.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 398

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 54/321 (16%), Positives = 110/321 (34%), Gaps = 49/321 (15%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           + FE   E Q + +  ++E  L   T   YE      +  L       I    + ++S  
Sbjct: 68  IKFEAFAE-QWFKEYAKLE--LRPTT---YER-----MRKLTARVYPAIGHLKLDKISRR 116

Query: 70  EIRAFISKRRTQK--------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           +I+ FI+              +  +++   +S I     Y     + T +    M+    
Sbjct: 117 DIKLFINDLALNGRNFKTGEPLSRKTIIHHVSFISDVFSYAIDMDMLTYNPCEKMKIPHI 176

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
                R +   +    +  +L            +      L    G R  E L L  ++I
Sbjct: 177 GEEKEREIYSPEEFDQLFELLQQAP-------LKYRVFFTLAVFTGFRRGELLGLEWKDI 229

Query: 182 MDDQSTLRIQ----------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           + +++ + ++                      R       + + + EY      +     
Sbjct: 230 LWEENVISVRRTSAYTGAEGQYTGKTKTKRSQRCNRYPDELFELLKEYKVWQDEERERQG 289

Query: 226 QLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
           +       LF    G+P+NP     + ++  +          H++RHS A+ L++ G D+
Sbjct: 290 EKWVDTDRLFTKWDGRPMNPQTPYGWYKEFCQKHDFRF-CNIHSMRHSHASILIAAGVDV 348

Query: 281 RSIQSILGHFRLSTTQ-IYTN 300
            ++ + LGH   +TT  IYT+
Sbjct: 349 ATVSADLGHSNCNTTLGIYTH 369


>gi|291543316|emb|CBL16425.1| Site-specific recombinase XerD [Ruminococcus sp. 18P13]
          Length = 310

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 57/283 (20%), Positives = 106/283 (37%), Gaps = 29/283 (10%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
            +TL  Y                  + +  I +++Y ++    ++   ++       +  
Sbjct: 29  PVTLNKYLVTLEWL-----KKLSPNLKLGDITRITYQQLINDYAETHERQTTMDFHHQIK 83

Query: 93  SGIKSFLKYLKKRKITTESNILN-MRNLKKSN-SLPRALNEKQALTLVDNVLLHTSHETK 150
             I           +         +   K      P+ LN+ +  T+++++ L       
Sbjct: 84  CAILD----AVDEGLIARDPTRKAIIKGKTPRAKKPKYLNQFELHTMLNHLKLTPQISWD 139

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----S 205
           W        + L+   G+R SEAL+LTP++      TL I    D       LP     S
Sbjct: 140 W-------FILLVAKTGMRFSEALALTPKDFDFPHQTLSINKTWDYKHGTGFLPTKNRSS 192

Query: 206 VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           VRK  +++  +  F      L    P+F     K  N       + +  +  G+P+  + 
Sbjct: 193 VRKIQMDWQTVIQFSGLVKGLPEDKPIFVKESQKVYNA-TINDILERHCKAAGVPV-ISV 250

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           H LRH+ A+ LL  G  + S+   LGH  ++TTQ  Y ++  +
Sbjct: 251 HGLRHTHASLLLFAGVSIASVARRLGHASMTTTQKTYLHIIQE 293


>gi|228474721|ref|ZP_04059452.1| integrase [Staphylococcus hominis SK119]
 gi|228271384|gb|EEK12752.1| integrase [Staphylococcus hominis SK119]
          Length = 378

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 55/331 (16%), Positives = 116/331 (35%), Gaps = 56/331 (16%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQ--SYECDTRQF----LIFLAFYTEEKITIQ 61
           EI++F+ +   + WL+           T++  +Y+     F    L        + IT+ 
Sbjct: 63  EIMTFKQI--YELWLEQYR-------NTVKESTYQQAMTTFKMMILPHFKDMAIKDITVP 113

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
             +++     R + S+ + ++I   ++           +Y    KI T++   +++  +K
Sbjct: 114 HCQKVVNEWYRTY-SETKKERIYASTI----------FEYAISLKIITDNPFNHIKAPRK 162

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
                ++  + + +    +  L    E    +  + A+   L   G+R  E ++LT  +I
Sbjct: 163 -----KSNQKHETMKYYTSDELQQFLELVKDNVLHHALFRTLAFTGIRRGELMALTWNDI 217

Query: 182 MDDQSTLRIQGK----------------GDKIRIVPLLPSVRKAILEY------YDLCPF 219
                TL +                      IR + +     + + E+        L   
Sbjct: 218 DFTNQTLSVNKTLAEGLNHRQFIDTPKTRSSIRTISVDDKTLEVLKEWRTQQRVLSLKHG 277

Query: 220 DLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
               +    +F  +   K LN       +  + +        T H  RH+  + L   G 
Sbjct: 278 HNTSSKHQEIFTNVETNKRLNRVYANETLNLICKKNNF-KRITVHGFRHTHCSLLFEAGL 336

Query: 279 DLRSIQSILGHFRLSTTQ-IYTNVNSKNGGD 308
            ++ +Q  LGH  + TT  IY +V  K    
Sbjct: 337 SVQEVQDRLGHGDIQTTMGIYAHVTEKQREK 367


>gi|325110231|ref|YP_004271299.1| integrase family protein [Planctomyces brasiliensis DSM 5305]
 gi|324970499|gb|ADY61277.1| integrase family protein [Planctomyces brasiliensis DSM 5305]
          Length = 339

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 50/330 (15%), Positives = 108/330 (32%), Gaps = 33/330 (10%)

Query: 4   NNLPEIVSFELLKE-RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
           +  P+ +S    +E  + +L+   +  G    T++ Y     +F  +   +      IQ 
Sbjct: 15  DGAPKQLSLSEGREIYERYLKRPAVAGGPKPATVKRYRPVMNKFQDYCGRHK-----IQC 69

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
             Q++      + +    +     +    L+ +K  L +L   K    S +      +  
Sbjct: 70  WNQVNRNVFDGYAAWLDDESYAYATEYLELNTVKQILNHLVSEKHLPASVLFEYPMQQPD 129

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            +       +Q   ++   +L    E +W+      ++  L   G+RISE   L   +I 
Sbjct: 130 GTNTYCYTAEQVRAML---VLCEQPELRWLQY----VVLGLARTGMRISELAELRWTDIN 182

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKA-------ILEYYDLCPFDLNLNIQLPLFRGIRG 235
            D+  + +  +    R   +     K+       I    ++       +    +F G R 
Sbjct: 183 LDRRMITLTDERRTRRNRDVDRRTVKSGYSRSFPIHSELEVMLKSHPRSADNLVFHGPRA 242

Query: 236 KPLNPGVFQR-----YIRQLRRY-------LGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
             + P   +       +  L           G+      H+ RH F +   + G   R +
Sbjct: 243 GRIKPDTIRNCLIRDVLHPLAEKFPAEYGDAGIAAG-RLHSFRHFFCSECANAGIPERVV 301

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              LGH      + Y +++       M  +
Sbjct: 302 MKWLGHRSSKMIRHYYHLHDDESHRQMQRL 331


>gi|154504936|ref|ZP_02041674.1| hypothetical protein RUMGNA_02446 [Ruminococcus gnavus ATCC 29149]
 gi|154505966|ref|ZP_02042704.1| hypothetical protein RUMGNA_03508 [Ruminococcus gnavus ATCC 29149]
 gi|167767740|ref|ZP_02439793.1| hypothetical protein CLOSS21_02275 [Clostridium sp. SS2/1]
 gi|153793465|gb|EDN75885.1| hypothetical protein RUMGNA_03508 [Ruminococcus gnavus ATCC 29149]
 gi|153794819|gb|EDN77239.1| hypothetical protein RUMGNA_02446 [Ruminococcus gnavus ATCC 29149]
 gi|167710479|gb|EDS21058.1| hypothetical protein CLOSS21_02275 [Clostridium sp. SS2/1]
          Length = 396

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 106/298 (35%), Gaps = 38/298 (12%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           RQ+L  +     + + ++ I  +  ++ + +  +   +    +++      +K+      
Sbjct: 107 RQYL--MNALKNDPLGMRAIDTVKQSDAKEWAIRMSEKGYAYKTIDNYKRSLKASFYMAI 164

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           +     ++        K S+ L     +K  LT      L    E   I ++    + LL
Sbjct: 165 QDDCIRKNPFE----FKLSDVLEDDTEQKVILTPEQEERLLAFMEKDKIYSKYYDEVVLL 220

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVR 207
              GLRISE   LT  +I      L I                    +  R +PL     
Sbjct: 221 LETGLRISEFCGLTT-HIDMQNRILNIDHQLLKDSEIGYYIETPKTKNGKRELPLTERAY 279

Query: 208 KAILEYYDLC---PFDLNLNIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGL 256
           +AI             +       LF    G P        +  G+ ++Y +  +  L  
Sbjct: 280 QAIQRILKNRGKAQPLIVGGYSNFLFLNREGLPKVAGNYEGMVRGLIKKYNKYHKDKL-- 337

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
             + T H+ RH++ T++ + G +  ++Q ++GH  ++ T   Y +   ++    +  +
Sbjct: 338 -PNITPHSFRHTYCTNMANRGMNPNTLQYLMGHANITMTLGYYAHGTFQSAKAELERL 394


>gi|89147661|gb|ABD62689.1| integrase [uncultured bacterium]
          Length = 163

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 38/111 (34%), Positives = 54/111 (48%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +G G       L     +A  E+     F  +     P     R    +  V Q  +++ 
Sbjct: 52  RGFGQVHLPNALARKYPQAAREWGWQYVFPSSRLSIDPRTGQKRRHHTDESVLQTAVKKA 111

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            R  G+  + T HT RHSFATHLL N  D+R++Q +LGH  +STT IYT+V
Sbjct: 112 VRAAGITKAATCHTFRHSFATHLLENDYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|89147657|gb|ABD62687.1| integrase [uncultured bacterium]
          Length = 163

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 50/91 (54%)

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            E+     F  + +    +    R   ++  V Q+ ++Q     G+    T HT RHSFA
Sbjct: 72  REWGWQWVFPASSHFTDRVTGEQRRHHVHESVLQKVVKQAVHKAGVSKPATPHTFRHSFA 131

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           THLL +G D+R++Q +LGH  ++TT IYT+V
Sbjct: 132 THLLEDGYDIRTVQELLGHSDVTTTMIYTHV 162


>gi|255693724|ref|ZP_05417399.1| integrase protein [Bacteroides finegoldii DSM 17565]
 gi|260620475|gb|EEX43346.1| integrase protein [Bacteroides finegoldii DSM 17565]
          Length = 391

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 59/299 (19%), Positives = 115/299 (38%), Gaps = 17/299 (5%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L   + E   S L   +         +  AF  E   T      L++  + +F S  
Sbjct: 106 KSFLDFYKEELATSSLKESTKHNHLSTLELLQAFKKEIFFT-----DLTFEFVSSFDSYL 160

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALTL 137
           +++     ++ + +  +K ++     ++    +        +K        L+ ++   L
Sbjct: 161 QSRGYHLNTIAKHMKHLKRYVNIAINKEYMDIQKYAFRKYRIKSVEGRHTHLSPEELHKL 220

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            +  L  T    K    ++ A L+  Y  GLR S+   LT +NI++      +  K  K 
Sbjct: 221 EEVQL--TEKFAKLQKPKD-AFLFCCYA-GLRYSDFTHLTSENIIEFHKEFWLIYKSVKT 276

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
                LP     + E   +       N     F+      LN     + +  L +  G+ 
Sbjct: 277 GTEVRLP--LYLLFEGKGIHILHRYKNDLNSFFKLKDNSNLN-----KELNVLAKLAGIS 329

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
              + HT RH+ AT L+ NG ++ ++Q +LGH  + TTQ+Y N+        + +   Q
Sbjct: 330 KHISFHTARHTNATLLIYNGANITTVQKLLGHKSVKTTQVYANIMDITIVRDLEKAASQ 388


>gi|111020166|ref|YP_703138.1| tyrosine recombinase [Rhodococcus jostii RHA1]
 gi|110819696|gb|ABG94980.1| possible tyrosine recombinase [Rhodococcus jostii RHA1]
          Length = 290

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 101/283 (35%), Gaps = 31/283 (10%)

Query: 54  TEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI 113
            E  + + T+R    T IR F      ++ G   +      +  F +      +  E N 
Sbjct: 4   GERPLALSTVRSYEIT-IRLFCEYLTDRRYGWTQV-----CLDRFGR--APELVFHEGNS 55

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVD------NVLLHTSHETKWIDARNSAILYLLYGCG 167
           +      +     R L+  +   L D      + +  +  +      R+SA+L   Y  G
Sbjct: 56  VLHVADYEGTPRRRPLSYDEVQALFDTLDSRVDTIRASGRKGALAAMRDSALLKFCYAFG 115

Query: 168 LRISEALSLTPQNIMDDQ--------STLRIQ---------GKGDKIRIVPLLPSVRKAI 210
           LR +E   +   ++  +          ++ ++          K   +  VP    + + I
Sbjct: 116 LRRAEVCRIDLVDLRRNPQAPQHRQVGSVAVRYGKASKGGPAKRRTVLTVPEFDWIVEVI 175

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            +Y       L       L+   R   ++P          RR  GL  +   H LRHS+ 
Sbjct: 176 EQYLSEVRPALAPGAHPALWVTERAGRISPRSVNLAFAGARRECGLDSALDLHCLRHSYV 235

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           THL+     +R +Q  +GH   STT IYT V+++     +   
Sbjct: 236 THLIEFDYPVRFVQEQVGHAHASTTAIYTGVSNEYRNQLLTRA 278


>gi|300765731|ref|ZP_07075708.1| integrase [Listeria monocytogenes FSL N1-017]
 gi|300513604|gb|EFK40674.1| integrase [Listeria monocytogenes FSL N1-017]
          Length = 400

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 95/254 (37%), Gaps = 30/254 (11%)

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           +++ + +  RS++     I S  +   + K+   +    +R  K +   P      +   
Sbjct: 148 EKKNKPLSPRSIRNIYFAINSVFETAVEWKVIPINPAEGVRLPKTTKRPPTIYTPAEIE- 206

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----- 191
           L++  L+               ++Y+    G R +E  +L  +++   +  +  +     
Sbjct: 207 LLNAALVKEPLRL-------QVMIYIALISGCREAELAALEVKHVNLIEDEITFEQTLVA 259

Query: 192 -----------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGK 236
                       K D   IV +   +   I  Y      DL    +      LF  + GK
Sbjct: 260 KAGEGLLLKESTKNDVAGIVSIPAWLTNLIETYISNEVLDLKTEGKWANHKFLFANMEGK 319

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH-FRLSTT 295
           P+ P    +  ++      LP+    H LRH+ AT LL+ G D++ IQ  L H   ++T+
Sbjct: 320 PIRPDSIYQRWKRFLERHNLPV-IRFHDLRHTSATLLLNKGRDIKIIQERLRHKSSVTTS 378

Query: 296 QIYTNVNSKNGGDW 309
            IY +V      D 
Sbjct: 379 NIYAHVLKDTHKDA 392


>gi|295109952|emb|CBL23905.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 382

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 53/287 (18%), Positives = 112/287 (39%), Gaps = 31/287 (10%)

Query: 53  YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
           + +  +    I+++    +   + +  +QK+   +    L  +KS L    + +I  ++ 
Sbjct: 91  HIKPALGKTKIQKIEKRAVLK-LQRELSQKLCASTTNSVLIILKSVLNEAVRDEIIIKNP 149

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
              ++ L+  +         +ALT  +  +     + +W+              G+RI+E
Sbjct: 150 AAGVKPLRTDDRPKATETIHRALTREEQQIFMKEAQKEWL----YEFFCFSLCTGMRINE 205

Query: 173 ALSLTPQNIMDDQSTLRI-----QGKGDKI-----------RIVPLLPSVRKAILEYYDL 216
             +L   +I    + + +     + KG  I           R +P+  +++K +    D 
Sbjct: 206 INALKWSDIDYINNMIHVTKTISRKKGGGIEETSPKSQTSKRDIPMNDTIKKILQMQKDK 265

Query: 217 CPFDLN----LNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYL---GLP-LSTTAHTLRH 267
                       I  P+F G RG   ++       I  + + L   G+     T H  R 
Sbjct: 266 ITLVYGDIFVKKISNPIFIGSRGATAVSSHSVGYSIDNVLKRLRQQGIEIERFTHHAFRD 325

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           +FAT  +  GG++++++ ILGH  L+ T  +Y +V        M +I
Sbjct: 326 TFATRYIEEGGNMQTLKKILGHSSLAMTADLYAHVLPDTKQQEMNQI 372


>gi|160893591|ref|ZP_02074375.1| hypothetical protein CLOL250_01145 [Clostridium sp. L2-50]
 gi|156864576|gb|EDO58007.1| hypothetical protein CLOL250_01145 [Clostridium sp. L2-50]
          Length = 658

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 52/319 (16%), Positives = 124/319 (38%), Gaps = 29/319 (9%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E+ +    +  Q +++       L+   +++  C  ++FL++         T+++I +++
Sbjct: 341 EVTNERNRELLQEYMKYQVGIGDLALGNIRNQLCYIKKFLVYFN-------TLESICEIT 393

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE---SNILNMRNLKKSNS 124
             +I  +    + ++I   ++ R +  I  F  YL  +             ++ +     
Sbjct: 394 EEQIAEYFKLLQEEEIKAETVNRQIFDIHRFFVYLNAKGHIKRIIFDPNYYIQKV-FPYH 452

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ--NIM 182
             R++ E + + ++         + K+       I   L+  GLRISE  +L        
Sbjct: 453 HDRSVQEDEYMEILQ--------KLKFFPEVQRLIFLNLWATGLRISEVCTLKGGAYYWD 504

Query: 183 DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
            + + +++ Q K    +++P+   + + +  Y         +     LF+   G     G
Sbjct: 505 GEDAWIKVYQIKMKTEKMIPISLVLYQIMKIYIKKHH----IKPTDFLFKSKDGGAYRTG 560

Query: 242 VFQRYIRQLRRYLGLPLST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            F +  +   +  G+ +S      H  RH+ A+     G  +++I+  LGH   + T+ Y
Sbjct: 561 TFVKGFKANCKKYGIHISGETFKTHDYRHTLASSFYDEGVSIQTIRDYLGHNNENMTKQY 620

Query: 299 TNVNSKNGGDWMMEIYDQT 317
            +   K       E ++Q 
Sbjct: 621 IDYMPKRIEQANKEYFNQA 639


>gi|150400365|ref|YP_001324132.1| phage integrase family protein [Methanococcus vannielii SB]
 gi|150013068|gb|ABR55520.1| phage integrase family protein [Methanococcus vannielii SB]
          Length = 182

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 76/185 (41%), Gaps = 18/185 (9%)

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L + +    +DN+              +     +LYG  LR+SE L++T +NI   +   
Sbjct: 10  LTKDELKKFIDNIDSK----------EHKLFFKMLYGMALRVSELLTITVKNINLKEGVC 59

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           ++     +   + ++P   + +         D NLN + PLF+       N       ++
Sbjct: 60  KLLDTKTERFEITVIP---EWLYSDIFGHILDNNLNDEDPLFKFK-----NRTYAWELVK 111

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +  +   +    + HT R S A HLL++G  L  +   L H  ++TT  Y  +  ++   
Sbjct: 112 KYTKVAKINKEFSTHTFRRSRALHLLNDGVPLEKVSKYLRHKSINTTMHYLKITVEDIKK 171

Query: 309 WMMEI 313
            + +I
Sbjct: 172 ELNKI 176


>gi|70727580|ref|YP_254496.1| integrase [Staphylococcus haemolyticus JCSC1435]
 gi|68448306|dbj|BAE05890.1| integrase [Staphylococcus haemolyticus JCSC1435]
          Length = 404

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 62/286 (21%), Positives = 114/286 (39%), Gaps = 35/286 (12%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE-SNILNMRNLKK 121
           +  ++   I+  I+      +  + +K  LS IK+ L+Y +K+   T+ S I ++   KK
Sbjct: 114 VENMNADVIQDLINSSLKDGLSHKLVKDDLSIIKNILRYAQKKYHITDISYIDDVVMPKK 173

Query: 122 SNSLPRA-------LNEKQALTLVDNVLLHTSHETKWIDARNSA----ILYLLYGCGLRI 170
           + +           L   + L +V+ +    + +      R+      I+      G+RI
Sbjct: 174 ATTREEVKAKRENYLEMAEVLAIVEELNRIANKKRASYMKRSYLFTAYIVEFQVLNGMRI 233

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL----------------------LPSVRK 208
            E L++ P NI  +   L I G     +                             +R+
Sbjct: 234 GELLAIQPDNIDFENKKLVIDGTIHWRKDGNKVGFKDTTKTASSYRTISLTTRSCDILRR 293

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            +LE      +++    +  +F   RG  L      R I+   + +G+    T+HT+RHS
Sbjct: 294 VMLENKKAVQWEIMYVDRGFIFTSHRGNSLPLTSINRNIQIAAQNIGIEKHVTSHTMRHS 353

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
             + L   G  LR+I   +GH    TT QIY++V  +   D M ++
Sbjct: 354 HISLLSQLGVSLRAIMERVGHTDHKTTLQIYSHVTEQMDKDMMNKL 399


>gi|213051670|ref|ZP_03344548.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213425642|ref|ZP_03358392.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213580194|ref|ZP_03362020.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213646693|ref|ZP_03376746.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 326

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 93/239 (38%), Gaps = 29/239 (12%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + S++  +     ++    S + S F +  +  + +  + + NMR    +      L  +
Sbjct: 95  YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 154

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q + L+         + K  D   + ++ +    G R  EA++LT   +   + T  ++ 
Sbjct: 155 QIVELL--------ADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITF-VRT 205

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+   + + I+       F                       FQ      + 
Sbjct: 206 KGKKNRSIPISKELYEEIMALDGFNFF-------------------TDCYFQFLSVMEKT 246

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++   +    + 
Sbjct: 247 SIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHLETALR 305


>gi|158520305|ref|YP_001528175.1| integrase family protein [Desulfococcus oleovorans Hxd3]
 gi|158509131|gb|ABW66098.1| integrase family protein [Desulfococcus oleovorans Hxd3]
          Length = 403

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 50/270 (18%), Positives = 97/270 (35%), Gaps = 37/270 (13%)

Query: 45  QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK 104
            ++  +  +         I +++Y ++  F S     K+G +     L  +KS   Y  +
Sbjct: 96  DYVSSMNGHILPNFKDMPIAEITYGDVLKFRSGL---KVGAKRANNILVPMKSVFDYADR 152

Query: 105 RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLY 164
             I  ++ +  ++ L +        +  +   L+D            +       L + +
Sbjct: 153 EGIIQDNVMRKIKRLSEEAPEIHPFSYDEVNRLLDA-----------VHPWYQPYLIVAF 201

Query: 165 GCGLRISEALSLTPQNIMDD-----QSTLR---------IQGKGDKIRIVPLLPSVRKAI 210
             G+R  E   L   + ++D     +  +R         I       R +  LP V +A+
Sbjct: 202 FTGMRAGEQNGLCWSDFLEDMQPEPRIFIRKTYVYKKDGIPKTKKSKRYIKCLPQVLEAL 261

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR-QLRRYLGLPLSTTAHTLRHSF 269
            E   L            +F  I G+ + P   ++ +        G+         RH+F
Sbjct: 262 SEQRKL------TGKNKHIFLTIDGRRMTPDHIRKEVWIPALEKAGIEYRP-PIQTRHTF 314

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTT-QIY 298
           AT +LS G D+  +Q++LGH  L    Q Y
Sbjct: 315 ATMMLSAGEDIGWVQNMLGHSSLQMIFQRY 344


>gi|325288106|ref|YP_004263896.1| integrase family protein [Cellulophaga lytica DSM 7489]
 gi|324323560|gb|ADY31025.1| integrase family protein [Cellulophaga lytica DSM 7489]
          Length = 364

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 59/301 (19%), Positives = 105/301 (34%), Gaps = 34/301 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           ++  L  ++  S     +Y       L  L  +    ++ Q I +      + ++ K   
Sbjct: 86  YITALAEKKNTSSG---NYGNW-NSMLKHLKKFCPTDVSFQDIDKSFVERFKEYLDKEAI 141

Query: 81  QKIGDR-SLKRSLSGIKSF---LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            + G + S     S    F   LK   K  I   +    +   K+       L   +   
Sbjct: 142 GRAGKQLSQNSKYSYYGKFSAALKQAVKDGILKVNPANGVEYFKQGEPQREFLTLDELQK 201

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQ-G 192
            V+        E +    +N+ I   L   GLR S+   L    I   +     +R +  
Sbjct: 202 AVNT-------ECELPILKNAFIFSAL--TGLRWSDIEKLIWSEIQHSKEMGYYIRFRQK 252

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K   +  +P+    R  + E           N    +F G+     +    Q+++     
Sbjct: 253 KTKGVETLPISDQARNLLGE---------KGNPDDKVFDGLHYSAWSNLKLQQWMM---- 299

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             G+  + T H  RH++AT  L+ G D+ ++  +LGH  L TTQIY  V      +    
Sbjct: 300 KAGITKTITFHCARHTYATLQLTLGTDIYTVSKLLGHKELRTTQIYAKVIDDKKKEAANR 359

Query: 313 I 313
           I
Sbjct: 360 I 360


>gi|330399609|ref|YP_004030707.1| hypothetical protein RBRH_03374 [Burkholderia rhizoxinica HKI 454]
 gi|312170346|emb|CBW77385.1| Hypothetical protein RBRH_03374 [Burkholderia rhizoxinica HKI 454]
          Length = 483

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 62/344 (18%), Positives = 116/344 (33%), Gaps = 69/344 (20%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L   + WL N       ++ T  +Y  +  + L++           + +  L++ +++ F
Sbjct: 118 LDAVRAWLSNYAN----TQTTFDTYRKEAERLLLWAVVQLG-----KPLSSLTHEDLQQF 168

Query: 75  ISKRRT--------------------------QKIGDRSLKRSLSGIKSFLKYLKKRKIT 108
            +                                +   S +++   +     +L      
Sbjct: 169 NAFLADPQPASRWVSATGGKYPRGDARWRPFNGPLSAASQRQARVILNGLFTWLVDAGYL 228

Query: 109 TESNILNMRNLKKSNSLPRA---LNE---KQALTLVDNVLLHTSHETKWIDARNSAILYL 162
             + +  +R  +   S+PR    L+     +    V+ +   T+ +  +       +  L
Sbjct: 229 RGNPMALLRQ-RAKRSVPRVTRYLSVSLWDEVKHFVEQLPRETTAQRAYSTRC-RWLTTL 286

Query: 163 LYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
            Y  GLR+SE    T  +          DQ  L I GKG + R VP  P +   +  Y  
Sbjct: 287 FYLQGLRLSEVAHGTMGDFSRRLGPDGHDQWWLDIVGKGQRARRVPASPELIVELARYRQ 346

Query: 216 LCPFDL--NLNIQLPLFRGIRGKP--LNPGVFQRYIRQL---------------RRYLGL 256
            C            PL    RG    L+       I+++                     
Sbjct: 347 ACGLPSLPRRAEDTPLVVPFRGPRRGLSRSALHDAIKRIFRDAASWLRARGPAFADRADE 406

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            +  +AH LRH+  +H    G DLR+++  LGH  L+TT +Y +
Sbjct: 407 LVRASAHWLRHTAGSHQADGGLDLRTVRDNLGHVSLTTTSLYLH 450


>gi|26248740|ref|NP_754780.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli CFT073]
 gi|170684288|ref|YP_001744556.1| type 1 fimbriae regulatory protein [Escherichia coli SMS-3-5]
 gi|218700831|ref|YP_002408460.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli IAI39]
 gi|227887412|ref|ZP_04005217.1| integrase family protein [Escherichia coli 83972]
 gi|293415644|ref|ZP_06658287.1| type 1 fimbriae regulatory protein [Escherichia coli B185]
 gi|300983732|ref|ZP_07176713.1| putative type 1 fimbriae regulatory protein FimB [Escherichia coli
           MS 45-1]
 gi|301024204|ref|ZP_07187908.1| putative type 1 fimbriae regulatory protein FimB [Escherichia coli
           MS 69-1]
 gi|301049117|ref|ZP_07196098.1| putative type 1 fimbriae regulatory protein FimB [Escherichia coli
           MS 185-1]
 gi|331648028|ref|ZP_08349118.1| type 1 fimbriae regulatory protein FimB [Escherichia coli M605]
 gi|331663927|ref|ZP_08364837.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA143]
 gi|26109146|gb|AAN81348.1|AE016764_30 Type 1 fimbriae Regulatory protein fimB [Escherichia coli CFT073]
 gi|170522006|gb|ACB20184.1| type 1 fimbriae regulatory protein, FimB family [Escherichia coli
           SMS-3-5]
 gi|218370817|emb|CAR18630.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli IAI39]
 gi|227835762|gb|EEJ46228.1| integrase family protein [Escherichia coli 83972]
 gi|291433292|gb|EFF06271.1| type 1 fimbriae regulatory protein [Escherichia coli B185]
 gi|300299063|gb|EFJ55448.1| putative type 1 fimbriae regulatory protein FimB [Escherichia coli
           MS 185-1]
 gi|300396659|gb|EFJ80197.1| putative type 1 fimbriae regulatory protein FimB [Escherichia coli
           MS 69-1]
 gi|300408461|gb|EFJ91999.1| putative type 1 fimbriae regulatory protein FimB [Escherichia coli
           MS 45-1]
 gi|307554411|gb|ADN47186.1| type 1 fimbriae regulatory protein [Escherichia coli ABU 83972]
 gi|315292310|gb|EFU51662.1| putative type 1 fimbriae regulatory protein FimB [Escherichia coli
           MS 153-1]
 gi|331042888|gb|EGI15028.1| type 1 fimbriae regulatory protein FimB [Escherichia coli M605]
 gi|331059726|gb|EGI31703.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA143]
          Length = 189

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 69/162 (42%), Gaps = 3/162 (1%)

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKI 197
           + +L   +      + R+ A+L + Y  GLR+SE ++L   +I   +S + I+  K    
Sbjct: 9   EWLLFFEAINGSKNEIRDKAMLQMAYVHGLRVSELIALKISDIDFSESAIYIKRLKNGLS 68

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
            + PL       + ++  L    +    +  LF   +G  ++     +  ++    + + 
Sbjct: 69  TVHPLQKETVLLLKKWLALRDNIVKKPFEDSLFLSCQGNKISRQYVYKMCKKYSHNMNI- 127

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            +   H LRH     L + G D R IQ  LGH  +  T +YT
Sbjct: 128 -NIHPHMLRHGCGYALANQGLDTRLIQDYLGHRNIHHTVLYT 168


>gi|319774882|ref|YP_004134151.1| integrase family protein [Thermovibrio ammonificans HB-1]
 gi|317115230|gb|ADU97719.1| integrase family protein [Thermovibrio ammonificans HB-1]
          Length = 279

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 69/303 (22%), Positives = 125/303 (41%), Gaps = 32/303 (10%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           +L +   +WL  L +    S  T + Y+      +  L     E  T++ ++  +  E+ 
Sbjct: 2   KLSELYTDWL--LALHNSTSPHTYRMYKKRVGDLIKALEVLGAE--TVEDLQGQTGKELL 57

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
                   QK     +++SL+   +F  +++  K  T  +I      K     P+ ++ +
Sbjct: 58  ----YHALQKHSPSVVEQSLAAWSNFRDFVEAVKGITLPSIPRRNLPKPKEKKPKPISRE 113

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRI 190
           +   L+D +        K  D        L+   GLR SE LSL+  +   + +   +R+
Sbjct: 114 ELRKLLDYL--------KEKDKEAYLAALLMAYAGLRASEVLSLSKFSFQREGNRLIVRV 165

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +GKG K R+VPL   V + I E  +L           PLF+             R +RQ 
Sbjct: 166 KGKGGKERVVPLPAGVSREIEENLNL----------FPLFKWSSSPYYR---LYRKLRQA 212

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            + +G+      H LRH+F T L   G     I++++GH  L+TT  Y  +  +   + +
Sbjct: 213 GKRVGIA-DFHPHRLRHTFGTELARRGVRPEVIRTLMGHSNLNTTAGYIGIADEELFEAV 271

Query: 311 MEI 313
             +
Sbjct: 272 ERL 274


>gi|301162158|emb|CBW21703.1| putative phage integrase/recombinase [Bacteroides fragilis 638R]
          Length = 308

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 50/295 (16%), Positives = 108/295 (36%), Gaps = 32/295 (10%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
           +     +++ L  +   K       +L   +++ F+ ++    +  +S+K  L  +K  +
Sbjct: 23  QSTLAAYMLILENHILPKFGESN--ELHENDVQGFVLEKLEGGLSMKSVKDILIVLKMVM 80

Query: 100 KYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
           K+  K +        +++         L   L+      +++ +  H S           
Sbjct: 81  KFGVKNEWMNYYEW-DIKYPTDVAGKKL-EVLSVANHKKILNYIQSHFSFPGLG------ 132

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL------ 211
             +Y+    GLRI E  +L   +I      L +    ++I I+       + ++      
Sbjct: 133 --IYISLSTGLRIGEICALKWSDINVYDGILTVNRTIERIYIIEGERKHTELVINTPKTK 190

Query: 212 ----------EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
                     E   +      +             P  P  ++ Y ++L   L +P    
Sbjct: 191 NSCREIPINKELLTMLKPLKKVVNDDYYILTNDECPTEPRTYRNYYKRLMEKLDIPK-LK 249

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYD 315
            H LRHSFAT  +  G D +++  +LGH  +STT  +Y + N +     + +++ 
Sbjct: 250 YHGLRHSFATRCIEVGCDYKTVSVLLGHSNISTTLDLYVHPNMEQKKRCIAKVFK 304


>gi|188526790|gb|ACD62276.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 49/94 (52%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 65  RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 124

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH   STT IYT+V
Sbjct: 125 SFATALLRSGYDIRTVQDLLGHSDGSTTMIYTHV 158


>gi|313633652|gb|EFS00410.1| Int [Listeria seeligeri FSL N1-067]
          Length = 384

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 109/292 (37%), Gaps = 37/292 (12%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T+  Y+    QF+ +     +       +  +   + + FI+          ++   
Sbjct: 76  SQSTINLYDLAYNQFVDYFGEKRK-------LNSIDAVQYQQFINHLSVD-YAISTVDTR 127

Query: 92  LSGIKSFLKYLKKRKITTESNIL--NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
              I++            ++  +  ++     + +  + +   +   L++        E 
Sbjct: 128 HRKIRAIFNKAVHLGYMKKNPAIGAHISGHDVAKTKAQFMETDKVHLLLE--------EL 179

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-------------KGDK 196
               + + A+++L    G+R  E ++LT ++I   + ++ +               K  K
Sbjct: 180 ANFHSISRAVIFLAVQTGMRFEEIIALTKKDINFAKRSITVNKAWDYKYTNTFIDTKTKK 239

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
            R++ +  S  + +  Y       +      N  + LF     KP++     + ++++  
Sbjct: 240 SRVIYIDNSTVQYLQSYLTWHTDYMKEHDIQNPLMLLFITYHNKPIDNASCNKALKKICN 299

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
            +      T H LRH+     +  G D+  +   LGH  ++TT + Y++++S
Sbjct: 300 TIN-SEPVTLHKLRHTHTGLCVEAGMDIIYVADRLGHDDINTTLKYYSHLSS 350


>gi|257870032|ref|ZP_05649685.1| phage integrase [Enterococcus gallinarum EG2]
 gi|257804196|gb|EEV33018.1| phage integrase [Enterococcus gallinarum EG2]
          Length = 390

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 81/238 (34%), Gaps = 31/238 (13%)

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT--LVDNVLLHTSHETKWIDA 154
           S  KY    ++   + +  +   K+   +    +E+  +      + LL      K    
Sbjct: 138 SVFKYAISLRLVRSNPMNGIIRPKRKKKI----DEEAFVAPYYAKDELLEFLDIVKAFPE 193

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----------------GKGDKIR 198
               +  +L   GLR  E L L  ++I     TL ++                     +R
Sbjct: 194 PIYPMFRILAFTGLRKGELLGLRYKDIDFQNKTLSVKQTLATVDGWKLEFQVPKTEKSLR 253

Query: 199 IVPLLPSVRKAILEYYDL-------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            + L     K I ++                 N +  LF     KP         + ++ 
Sbjct: 254 TISLDDETLKVIKKHMIKQKAFFLEHGLKTKENGEQLLFATFENKPYYLDFVNHNLERII 313

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGD 308
           +   L    T H  RH+  + L  +G  ++ +Q+ LGH  + TT  IY +++ +   +
Sbjct: 314 KEHNL-KRITPHGFRHTHCSLLFESGASIKEVQARLGHTDIKTTMDIYNHLSKRQTEE 370


>gi|282877654|ref|ZP_06286469.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281300226|gb|EFA92580.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 447

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 62/319 (19%), Positives = 131/319 (41%), Gaps = 31/319 (9%)

Query: 14  LLKERQNWL----QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLS 67
           LL+    +L    + + I+R L    L++Y+      L  L  Y ++K  +  I   QL 
Sbjct: 151 LLESFGEYLTQTKERIGIDRALKTFKLRTYQ------LSLLREYVQKKHKVSDIPLSQLD 204

Query: 68  YTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
              I  F       +++   S+  +LS +++ ++   K+ +      L   + ++    P
Sbjct: 205 KAFIEGFEYYLTIERRLKRSSISSTLSTLQTIVRIAVKKGVLDFYPFLGY-SYERPKGEP 263

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R++ +++   +++  +   ++           +       GL IS+  +L  +NI+ ++ 
Sbjct: 264 RSITQEELERIINLEIEWENYR------FVRDLFVFSCFSGLAISDVRNLREENIVLEEG 317

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            L I+G+  K +    +  +  A+                +P             +    
Sbjct: 318 KLCIKGRRMKTKTPYRVQVLPPALTIMNRYRGIRAGFVFDVP----------TTDIVLNG 367

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +  ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQ+Y  V+S+ 
Sbjct: 368 MHYIQRNIGMETPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSER 427

Query: 306 GGDWMMEIYDQTHPSITQK 324
               M  I  +   + T K
Sbjct: 428 IHRDMQAIQQRIQDTFTLK 446


>gi|81428578|ref|YP_395578.1| site-specific tyrosine recombinase XerS [Lactobacillus sakei subsp.
           sakei 23K]
 gi|78610220|emb|CAI55269.1| Site-specific DNA-tyrosine recombinase, XerC [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 352

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 57/340 (16%), Positives = 119/340 (35%), Gaps = 43/340 (12%)

Query: 15  LKERQNWLQNLEIERG---LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQ 65
           L +  ++++   I R     S  TL  Y  +  +F  +L         T + I +  + +
Sbjct: 14  LADLPDYVRKFYINRQANAYSSATLYQYLQEYVRFFSWLIDEQIVTVQTTKDIPLVALDK 73

Query: 66  LSYTEIRAFISKRRTQ------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
           +   +I  +      +      K+  +++ RS++ + +   +L       +      RN+
Sbjct: 74  MKLEDIELYKIFLMNKRKVNNHKLSFQAVNRSINALNALWYFLTIEAEQADGEPYFYRNV 133

Query: 120 KKSNSLPRA---------------LNEKQALTLVDNVLLHTS--------HETKWIDARN 156
            K   L ++               L   +    +  + +              K    R+
Sbjct: 134 MKKVKLLKSSETMATRSRHIGQKLLTGDKKHDFITFMQVDYPSALSNRQLASYKQNCERD 193

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
            AI  L    G+R+SE       ++  +Q T+ +  KG +   VP+ P     + +Y  +
Sbjct: 194 IAICVLALTTGIRLSELAQANVSDLNLEQLTITVIRKGGQQDTVPIAPWGLPYLQDYVQI 253

Query: 217 CPFDLNLNIQLPLFRGIRG---KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                    +  LF        K ++    ++ + +     G+    T H  RH+ AT L
Sbjct: 254 RQQRYLAANERALFVTKYRGQAKRISNYAIEKLVAKYSEAFGV--RLTPHKFRHTLATDL 311

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +S       + + LG      T +YT+V        M ++
Sbjct: 312 MSATHSETIVATQLGQTTTQATHLYTHVVDDEQRSAMDKL 351


>gi|326382424|ref|ZP_08204116.1| phage integrase family protein [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199154|gb|EGD56336.1| phage integrase family protein [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 377

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 64/347 (18%), Positives = 116/347 (33%), Gaps = 48/347 (13%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           PE    EL+     W +N ++ R L   T+       R    F+    EE          
Sbjct: 29  PEERVVELM--LDGW-RNQQLSRNLQFSTID---RRVRCVQRFIEHSNEEPWN------W 76

Query: 67  SYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKY---------LKKRKITTESNILNM 116
           +   +  F +  R+ + +   +L+     +++F  Y             ++         
Sbjct: 77  TPAMVEEFSADLRSVRHVMHSTLRGYHGTLRAFCSYISNPDYGWDRVCEQLFDAYPAQVY 136

Query: 117 RNLKKSNSL--------PRALNEKQALTLVDNVLLH------TSHETKWIDARNSAILYL 162
                ++ +         R   + +   L +           TS +      R++A++ +
Sbjct: 137 SAWNTASHVQEYDGRASKRPYTKDELQALFEYADDEVARIGTTSRKGWQAAYRDAAMMKV 196

Query: 163 LYGCGLRISEALSLTPQNI--------MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
            Y  GLR +E   L   +                +++         P   SV        
Sbjct: 197 AYAYGLRFNELTHLQLVDFARNPHAREFGKFGVCKVRYGKAFRGSPPKPRSVLTVWRWTP 256

Query: 215 DLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            +    +      P    LF   RG  +      R +R+    LG+P     H+ R S+A
Sbjct: 257 PIIEDWIANGRGDPDSLDLFSSERGGLVVGSTLLRRVRRYCVDLGIPDGVDLHSFRRSYA 316

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           THLL +G D R +Q  +GH   STT IY   + +     +  + D+T
Sbjct: 317 THLLEDGWDPRFVQDQMGHEHASTTGIYQFTSDEFRRSTLRSVLDRT 363


>gi|313674555|ref|YP_004052551.1| integrase family protein [Marivirga tractuosa DSM 4126]
 gi|312941253|gb|ADR20443.1| integrase family protein [Marivirga tractuosa DSM 4126]
          Length = 417

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 115/299 (38%), Gaps = 31/299 (10%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-------QK 82
             S  TLQ Y+   R F  FL+  T++ ++   I ++ Y  +  F +  R        + 
Sbjct: 127 NFSTGTLQHYKVTERYFERFLS--TKKNLSDIAIEKVDYKFLLDFEAFLRAWKPKDHQKP 184

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           IG   + + +   +  L Y  K    T++       +    S    L  ++   +    L
Sbjct: 185 IGHNGIMKHMCRFRKVLNYAYKMDWITDTPFKKYH-ISYEKSTRTYLTVEELSAIEVKEL 243

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----MDDQSTLRIQGKGDKIR 198
                E      +   I       GL   +  +L+  +I      ++     + K     
Sbjct: 244 DIARLE------QIRDIFIFSCYTGLSYIDLFNLSKDHIVIGINGEKWIQYKRQKTSTPF 297

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            VPLLP   + I +Y D        N  LP+    +           Y++++    G+  
Sbjct: 298 SVPLLPKALELIEKYED--HPKAKENQLLPVVSNQKT--------NAYLKEIADLCGIKK 347

Query: 259 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             T H  RH+FAT + L+NG  + ++  +LGH +LSTTQIY  V     G  M  + ++
Sbjct: 348 QLTFHIARHTFATTVTLTNGVPMETVSKMLGHTKLSTTQIYAKVVENKIGTDMAALKEK 406


>gi|164688499|ref|ZP_02212527.1| hypothetical protein CLOBAR_02144 [Clostridium bartlettii DSM
           16795]
 gi|164602912|gb|EDQ96377.1| hypothetical protein CLOBAR_02144 [Clostridium bartlettii DSM
           16795]
          Length = 302

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 54/264 (20%), Positives = 104/264 (39%), Gaps = 23/264 (8%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T + Y     QF  FL          + +  ++  + + F+   R +     + ++  
Sbjct: 24  PKTKKDYLLKIIQFKKFLEG--------KDLLDVNKEDCQKFMCSIR-ETYAKSTSEKIY 74

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR--ALNEKQALTLVDNVLLHTSHETK 150
           S I SF  +L++ K    +    +     S    +   L+ ++   L+D++         
Sbjct: 75  SYIHSFYSFLQRNKHIEINPFSFVEKPIVSRDKGKDDVLSIQEINKLIDSL--------Y 126

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
            ++AR+  I+  L   G  ++E + +  ++  + +D +     GKG K R+V L P   K
Sbjct: 127 KLNARDRLIMVFLTTTGCMLNELVDVKWKDLIVDEDDNYYVRLGKGKKERVVKLHPYCFK 186

Query: 209 AILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
            I +Y Y     ++ L     +F   +   +     +  + +     GL  + +A  LRH
Sbjct: 187 LIEDYRYHSGLSEIILPTDDFIFTTQKSNSITDRNVRVIVHKAFSLAGLE-NYSAKDLRH 245

Query: 268 SFATHLLSNGGDLRSIQSILGHFR 291
           S+A   L  G D   IQ  LG   
Sbjct: 246 SYAAISLLLGADKEEIQKQLGWSD 269


>gi|126664437|ref|ZP_01735421.1| probable integrase/recombinase [Marinobacter sp. ELB17]
 gi|126668630|ref|ZP_01739582.1| probable integrase/recombinase [Marinobacter sp. ELB17]
 gi|126626889|gb|EAZ97534.1| probable integrase/recombinase [Marinobacter sp. ELB17]
 gi|126630763|gb|EBA01377.1| probable integrase/recombinase [Marinobacter sp. ELB17]
          Length = 403

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 58/299 (19%), Positives = 123/299 (41%), Gaps = 18/299 (6%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           S +      +W + +E +RGL+  T  +Y      +L++L     E   + ++       
Sbjct: 107 SEDFTALLASWSKEME-QRGLAVATRSAYGHAACDYLLYL-----EGTGLTSLAMADGAS 160

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           I  F+   R +   + ++   ++  + FL + ++  +    N L M N+K+ + +   L 
Sbjct: 161 ILRFLESLRGR-WAETAMWTVVTNFRPFLNFTRRGDLL---NALKMANVKRHHGIVPLLG 216

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-R 189
             + L +V             + AR+++I+ L    GLR  + ++L  ++I    ST+  
Sbjct: 217 NDEELAVVHAC------THGEVSARDASIVLLTLVTGLRACDLIALRLKDIDWRGSTIGI 270

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           +Q K      +PLLP +   + +Y      +   +           +  +        R+
Sbjct: 271 VQRKTGNPLTLPLLPVIAGKLAKYVLNERTNSKDDPLFLRMLAPHTELADHSSIYEVTRK 330

Query: 250 LRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           +    G+         LRH+ A+ LL  G  L +I ++LGH    +T +Y + ++ +  
Sbjct: 331 VFAAAGVDRTKVGTRLLRHNAASKLLRAGTPLPTISAVLGHSSPDSTNVYLSTDTGHLR 389


>gi|89147665|gb|ABD62691.1| integrase [uncultured bacterium]
          Length = 163

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 52/110 (47%)

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G G       L      A  E+     F  +     P  +  R   +     Q  ++   
Sbjct: 53  GWGSVYLPTALERKYPNAEREWIWQYVFPSSRISTDPRSQVRRRHHVEESSLQLAVKAAA 112

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R  G+    T H+LRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 113 RASGICKPATCHSLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|194438425|ref|ZP_03070515.1| integrase for prophage [Escherichia coli 101-1]
 gi|194422649|gb|EDX38646.1| integrase for prophage [Escherichia coli 101-1]
          Length = 350

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 93/239 (38%), Gaps = 29/239 (12%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + S++  +     ++    S + S F +  +  + +  + + NMR    +      L  +
Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q + L+         + K  D   + ++ +    G R  EA++LT   +   + T  ++ 
Sbjct: 179 QIVELL--------ADCKRQDPILALVVKICLSTGARWREAINLTRSQVTKYRITF-VRT 229

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+   + + I+       F                       FQ      + 
Sbjct: 230 KGKKNRSIPISKELYEEIMALDGFNFF-------------------TDCYFQFLSVMEKT 270

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++   +    + 
Sbjct: 271 SIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHLETALR 329


>gi|171057458|ref|YP_001789807.1| integrase family protein [Leptothrix cholodnii SP-6]
 gi|170774903|gb|ACB33042.1| integrase family protein [Leptothrix cholodnii SP-6]
          Length = 326

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 70/321 (21%), Positives = 119/321 (37%), Gaps = 43/321 (13%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTEEK 57
           M    +P           + +L    +ER   G S   +++  C  R F   L       
Sbjct: 1   MSAAAMP------FKSRVERFL----VERHGLGFSAR-VEA--CTLRSFARHLHE----- 42

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
             I     L+   +  +  +         +  R L  +++F+++L++ +  TE     + 
Sbjct: 43  --IGHCGPLTVEVMTDWARRDSHGSTDPVTWARRLKRLRTFVRWLQQFEPDTEVPDDTVF 100

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
                   P   +E++ + L+ +        +         +  L+   GLRISEALSL 
Sbjct: 101 GRMPERKAPHIYSEQEIIDLLTSARRLGPA-SSLRGVVFETLFGLIASTGLRISEALSLK 159

Query: 178 PQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIR- 234
             ++      L IQ  K  K R VP+ PS  +A+ +Y         +       F G R 
Sbjct: 160 NADVDLKTGMLSIQLTKFGKSRQVPVHPSTLEALRQYRLRRDLAGESYGDDTAFFVGSRG 219

Query: 235 ---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHT-----LRHSFATH----LLSNGGDLR- 281
              G+PL      R   +LRR LG P   + H      LRH+F         + G D+  
Sbjct: 220 RLHGRPLGDRQVHRVFGELRRQLGWPNRGSHHAARIHDLRHTFVVRRIVQWYAQGVDIDQ 279

Query: 282 ---SIQSILGHFRLSTTQIYT 299
              S+ + +GH  ++ T  Y 
Sbjct: 280 AMLSLSTYIGHAMVTNTYWYL 300


>gi|29349957|ref|NP_813460.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341868|gb|AAO79654.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 372

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 60/298 (20%), Positives = 112/298 (37%), Gaps = 29/298 (9%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L   +  + L K   +        F       + E+I +    +     + A   +R 
Sbjct: 94  DFLAYYK--KTLRKHDQKWEFVYLHFFNFVGGKCSFEEIDVDLCNKFREYLLNAKQLRRP 151

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            + I   S     S  + FLK L + K+   +    +  ++  + +   L+  +   L +
Sbjct: 152 ERPISRNSAVGYWSTFRGFLKILYRNKLIHSNVNDFLDKIEPEDVVKDYLSVDELYRLAE 211

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----DQSTLRIQGKGD 195
                     K    + +++   L    LRIS+ L+L  + I+D     +    +  K  
Sbjct: 212 T-------PCKIPVLKTASLFSCL--TSLRISDILTLRWEEIVDFAAGGKCVHTVTQKTK 262

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
              I+P+     + I                 P   G+  K L     Q  +++  R  G
Sbjct: 263 TEDIIPISDEALQLI--------------GYSPEKTGLVFKGLKRCWTQYPMKEWIRAAG 308

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +  + T H+ R +FAT   + G D+R+IQSI+ H  ++TTQ Y  V   N      +I
Sbjct: 309 ITKNITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYMKVVDSNKRKASNKI 366


>gi|322688910|ref|YP_004208644.1| phage integrase [Bifidobacterium longum subsp. infantis 157F]
 gi|320460246|dbj|BAJ70866.1| phage integrase [Bifidobacterium longum subsp. infantis 157F]
          Length = 418

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 51/354 (14%), Positives = 108/354 (30%), Gaps = 48/354 (13%)

Query: 1   MEGNNL-PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
           ME   L P   S  L    + WL+   +   +   T   Y     +    +     E I 
Sbjct: 62  MERTGLLPGAKSPYLKDYAERWLEEYRL--NVKPTT---YRTRAGRIHACM-----EVIG 111

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
              +  L+   +R  +    ++++   +LK     +K  L   +  ++        +R  
Sbjct: 112 CVRLTDLTPDHVRQCMRVL-SKRLAPSTLKDHFVSLKMMLDQAELEELIPVDPCRRVRPP 170

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS-----AILYLLYGCGLRISE-- 172
           +   +  R L+  Q   L++ V    +         +       +  L +  G+R  E  
Sbjct: 171 RVEPTETRILSPDQPKQLIEAVPNRGAKRRGPALTVDVDESWMLLFELAFAAGMREGERY 230

Query: 173 ------------ALSLTPQNIMDDQS----------------TLRIQGKGDKIRIVPLLP 204
                          +  Q  +                       +     K        
Sbjct: 231 ALMPYELEQRDGVPGINVQQQIQQYGKPEDAVIPAWLKAEHLYGILWLTTPKTHAAHRFV 290

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            +  ++ +        L++  +  +F   RG P+     +    +  +  GLP   T H+
Sbjct: 291 PISTSLWQRLWARVKRLDIGPRELIFTNSRGNPVRSSTERHNWNKALKAAGLP-PVTIHS 349

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
            RH  A+          +  +I+GH  +S T  YT+ ++ +    + +     H
Sbjct: 350 ARHWTASMTARANMPDDARTAIMGHTSISMTNHYTHRDTASLAKLLGQAIPDLH 403


>gi|57237839|ref|YP_179087.1| phage integrase family site specific recombinase [Campylobacter
           jejuni RM1221]
 gi|57166643|gb|AAW35422.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni RM1221]
          Length = 223

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 91/226 (40%), Gaps = 12/226 (5%)

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMR--NLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           R+L+   SF+            ++  +R    K    L   LNE + + L + +    + 
Sbjct: 2   RALTSFFSFISDNNDELFIFSFDMKKIRFRTEKSEEKL-NYLNENEIIRLNNVLEKEKAK 60

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLP 204
           +  +   RNS ++ L+   GLRISEAL++   +     D+   + I GKG K +   +  
Sbjct: 61  KEVYNSFRNSLLIKLMLYGGLRISEALNVKLCDFEEVDDEILKISIIGKGGKEQFAFIKK 120

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
                 LEY     F  N+     + +   GK LN       +  +     +      H 
Sbjct: 121 EEVDDELEY-----FKENIQDSDYIMQTSTGKHLNRSNAFLIVNNIYAKALISKK-GLHL 174

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           LRH+ A  L + G +L  IQ IL H  L+TT IY    +      +
Sbjct: 175 LRHTLAMRLTAKGTNLVVIQKILRHANLNTTTIYAKATNDTIKTAL 220


>gi|296110926|ref|YP_003621307.1| integrase [Leuconostoc kimchii IMSNU 11154]
 gi|295832457|gb|ADG40338.1| integrase [Leuconostoc kimchii IMSNU 11154]
          Length = 375

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 115/307 (37%), Gaps = 35/307 (11%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L ++ +E    + T++  E    + +     +         +  +   +++ +I+  + +
Sbjct: 74  LYDMWLETY--QHTVE--ESTLNKTMNVFNVHIIPAWGDTRVTDIRPLDLQRYINTMQGK 129

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN---SLPRALNEKQALTLV 138
            +  R +   L   +  L    +  +        +   K+        + ++  +    V
Sbjct: 130 ILHYRKITGYL---RRLLNIAVRMDMIPVDPFTKIEMPKERRQVNKRKQFMDVDEFKAFV 186

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-------- 190
           +        + K+I+ +   +L L    G+R  E L+L  + +  +   + I        
Sbjct: 187 EV----LDSQYKYINQQAYTLLRLGAMTGMRTEELLALQWEQVDFNGGYISIVQALGRGF 242

Query: 191 --------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
                          R + +   +   + ++Y++  ++ N +         +GK L    
Sbjct: 243 NGGTYIKAPKSQTSKRTLKIDNKMLAVLSDWYEVSHYNSNNDFVF----NNQGKTLQVMR 298

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
             +++  +    G+ +  + H LRH++AT  L  G  ++ +Q+ LGH  +S T  +Y+++
Sbjct: 299 PNKWLHDVSNKYGVAVGLSMHKLRHTWATLALDQGASVKQVQTYLGHADVSMTLDVYSDI 358

Query: 302 NSKNGGD 308
             +   +
Sbjct: 359 TKRASDE 365


>gi|258654606|ref|YP_003203762.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258557831|gb|ACV80773.1| integrase family protein [Nakamurella multipartita DSM 44233]
          Length = 422

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 59/355 (16%), Positives = 116/355 (32%), Gaps = 57/355 (16%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             + +LQ+L+   G S  T +SYE D    L +  F     ++     ++   +   ++S
Sbjct: 48  AVRAFLQDLQAS-GRSAATQRSYEMDL---LRWFRFGWAIDVSWDQATRVEARDFCRWLS 103

Query: 77  KRRT--------------------------QKIGDRSLKRSLSGIKSFLKYLKKRK-ITT 109
            R                             +    +   S + ++ F ++ ++      
Sbjct: 104 LREKPSQPSSAGDGVVRGQPNAVTGRAGPGDRYAVATRAHSETVLRGFYEFHREAGTGPI 163

Query: 110 ESNILNMRNLKKSN----SLPRALNEKQALTLVDNVLLHTSHETKWIDAR---------- 155
            +    +R            P      + + L           +   +            
Sbjct: 164 VNPFPLVRERSSGRANAHHNPMEPFRNERVGLYRPRAPRRVPRSIPDELFNRLFAELGSH 223

Query: 156 -NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG-DKIRIVPLLPSVRKAILEY 213
            + A++ L    G R +E L +   ++   Q  + +  KG   ++ +P  P     +  Y
Sbjct: 224 RDRALVALWVSTGARSAELLGVRRGDVDPGQQLVTVVRKGSRAVQQLPASPDAFVWLRLY 283

Query: 214 YDLCPFDLNLNIQLPLFRGIRGK--PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
                         PL+  +R    PL     +    +    LG   + T H LRH+ A 
Sbjct: 284 QATLDDTTPAGRDDPLWLTLRRPRRPLTYPAARAMFGRAAGALG--ANWTLHDLRHTAAY 341

Query: 272 HLLSNG-GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT-----HPS 320
            +  +    L  +Q +LGH  LSTTQIY      +    M+  + ++     HP+
Sbjct: 342 RMARDPLVPLTDVQWVLGHAHLSTTQIYLTARPGDVIAGMLAHHRRSEQQVEHPA 396


>gi|227903645|ref|ZP_04021450.1| bacteriophage integrase [Lactobacillus acidophilus ATCC 4796]
 gi|227868532|gb|EEJ75953.1| bacteriophage integrase [Lactobacillus acidophilus ATCC 4796]
          Length = 385

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 52/307 (16%), Positives = 118/307 (38%), Gaps = 38/307 (12%)

Query: 35  TLQS--YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           T+++  Y   TR F      +  +++  + I +L+  + +  ++         ++ KR +
Sbjct: 86  TVKTSTYATTTRYF----EDHILKQLGSKYIDKLTVLDCQKAVNIWFND--APKTYKRFM 139

Query: 93  SGIKSFLKYLKKR-KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
               + L Y     ++ +++ +  +   K + + P+   +  +   ++  L +     K 
Sbjct: 140 RYTNNVLNYGINNLELISKNPMNKVIPPK-AKNEPKPFTDFYSKDELNTFLRNA----KE 194

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----------------KGD 195
            + +      LL   G+R  EAL+L   +I    +T+ I                    +
Sbjct: 195 YNFKYFVFFRLLAYSGMRKGEALALKWSDINFKDNTISINKDVTVGLNNELYEDTPKTEN 254

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDL------NLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
             R + +  +  + + E+  +    +       LNI   LF  I    L+    +++   
Sbjct: 255 SFRTLDMDATTMEYLKEWRLMQQKTMLELGYNFLNIDNLLFPTINNGYLSMSKPRQWNVA 314

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGD 308
           + +   L      H  RH+ A+ L   G  +  +++ LGH  ++TT  IYT+V      D
Sbjct: 315 ICKKYDL-RRIKIHGFRHTHASLLFEAGASMNEVKARLGHADINTTMNIYTHVTDDQKKD 373

Query: 309 WMMEIYD 315
              ++  
Sbjct: 374 TANKLVR 380


>gi|254437562|ref|ZP_05051056.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198253008|gb|EDY77322.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 309

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 51/293 (17%), Positives = 101/293 (34%), Gaps = 31/293 (10%)

Query: 49  FLAFYTEEKITIQTIRQLSYTEIRAFISK-----RRTQKIGDRSLKRSLSG--------- 94
            LA         + + +++  ++   ++K      R  K+   +  R L           
Sbjct: 17  MLAKLVAPDWGNRLVTEITPYDVEKLLNKVAAGRARPSKVTPNNRARKLQAAKPTPVRAN 76

Query: 95  -----IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
                ++    Y        ++   + R  +  N   R L  ++   L +   L T+ + 
Sbjct: 77  RTGEVLRKMFTYAVGWGWRDDNPASSFRR-RIENPRERFLCHEEIHKLAEA--LETAEDR 133

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           +  D     I+ +    G R+ E      ++   +  +        K R +  LP   +A
Sbjct: 134 RAAD-----IIRMCMLTGARVGEVRQAQFEHFNLEHLSWSKPASMTKQRKIHRLPISDEA 188

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
                      L     + LF G           +R+   +++ +G+P     H LRH+F
Sbjct: 189 --AAIVRQRQLLVPRGCVLLFPGDVPGQ-PVREIRRFWAHIQKQVGIP-DVRIHDLRHTF 244

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           A+ L+S G  L  I  +LGH ++ TTQ Y ++        +  +     P   
Sbjct: 245 ASLLVSGGASLEMIGKLLGHSQMQTTQRYAHLMDSPLRAGVDAVASAFRPRPK 297


>gi|30908738|gb|AAP37601.1| IntI [uncultured bacterium]
          Length = 161

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/91 (38%), Positives = 47/91 (51%)

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            E++    F        P  +  R   ++    QR +RQ  R   L    T H LRHSFA
Sbjct: 71  REWHWQYVFPAARRSVDPRSKLERRHHVSDQSVQRAVRQAARDAKLHKPVTPHVLRHSFA 130

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           THLL  G D+R++Q +LGH  + TT IYT+V
Sbjct: 131 THLLQAGYDIRTVQELLGHKDVQTTMIYTHV 161


>gi|327439442|dbj|BAK15807.1| integrase [Solibacillus silvestris StLB046]
          Length = 363

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 118/336 (35%), Gaps = 34/336 (10%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           N+ +I+SFE + +   +++  +  R          E   ++    +  + +     + + 
Sbjct: 46  NVEQIISFEFIAD--EYMKWYKTRRK---------ESSFKKLRSVITVHLKPYFKKKALH 94

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSN 123
            +   +I  F       K+   + K+    + +   +  K + T ++    + N+  K N
Sbjct: 95  TIRQRDIIKFHDHLIETKLSAATAKKIHQILSALFNFAIKNEYTKDNPARVVGNIEMKEN 154

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
                    +    +  V           +     +   LY  G+R  E ++LT  +I  
Sbjct: 155 KHMNYWTLDEFKAFIKQVD----------NIVYHTLFMTLYYSGMRTGELVALTWSDIDF 204

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
             +T+ +       +I          I+   +     L         +      +N  VF
Sbjct: 205 TNNTINVNKTLAGTKITTTKTESSTRIITMPNHIMHLLGKLKLHQASKYGFEPKMNYCVF 264

Query: 244 QRYIRQ---------LRRYLGLP--LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
            ++ R           R+Y+ L        H  RHS A++L++ G  +  + + LGH  +
Sbjct: 265 GKFTRYMSKTALDNNYRKYIELSDVKRIRLHDFRHSHASYLINKGVIISVVAARLGHANV 324

Query: 293 STT-QIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
           S T   Y+++      + +  + D   P+   + K+
Sbjct: 325 SMTLDTYSHLYPSTEKEAVAHMEDDFKPAQIIEFKQ 360


>gi|301062646|ref|ZP_07203274.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300443257|gb|EFK07394.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 359

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 48/282 (17%), Positives = 99/282 (35%), Gaps = 20/282 (7%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           E E  L     +SY            F+T++         +S  +I  +   R +Q +  
Sbjct: 75  EYEEYLKTHKPRSYYGRMEYMFSNFEFFTKKN-------AISAADISKYQKLRASQGVSG 127

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            ++ R L+   +       R +   +        ++     R L E + +  +       
Sbjct: 128 TTINRELNYCDAAFNRAVSRNMIAVNPFTGFDKFEELERT-RFLTEDELVRFL-----RA 181

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205
           +   +       A++      GLR    L+L    I  +   +              +  
Sbjct: 182 AAYYEIQAPHLKAVVLTAILTGLRKRAILTLHKGEINFNLGLIIKFPGQASRNKRAGVIP 241

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           +   +++        +  +    LF      +P+     ++  ++  +  G+      H 
Sbjct: 242 IPDDLVDILKSR---IEQSKSGYLFENPNTGQPM--RDVKKSFKKALKKAGIE-DFRFHD 295

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           LRH+FAT+ +    D+R +Q ILGH  + TTQ YT+V ++  
Sbjct: 296 LRHTFATYAMVKSKDIRGVQEILGHKNIQTTQKYTHVLAREK 337


>gi|307566140|ref|ZP_07628597.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345152|gb|EFN90532.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 419

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 62/319 (19%), Positives = 131/319 (41%), Gaps = 31/319 (9%)

Query: 14  LLKERQNWL----QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLS 67
           LL+    +L    + + I+R L    L++Y+      L  L  Y ++K  +  I   QL 
Sbjct: 123 LLESFGEYLTQTKERIGIDRALKTFKLRTYQ------LSLLREYVQKKHKVSDIPLSQLD 176

Query: 68  YTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
              I  F       +++   S+  +LS +++ ++   K+ +      L   + ++    P
Sbjct: 177 KAFIEGFEYYLTIERRLKRSSISSTLSTLQTIVRIAVKKGVLDFYPFLGY-SYERPKGEP 235

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R++ +++   +++  +   ++           +       GL IS+  +L  +NI+ ++ 
Sbjct: 236 RSITQEELERIINLEIEWENYR------FVRDLFVFSCFSGLAISDVRNLREENIVLEEG 289

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            L I+G+  K +    +  +  A+                +P             +    
Sbjct: 290 KLCIKGRRMKTKTPYRVQVLPPALTIMNRYRGIRAGFVFDVP----------TTDIVLNG 339

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +  ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQ+Y  V+S+ 
Sbjct: 340 MHYIQRNIGMETPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSER 399

Query: 306 GGDWMMEIYDQTHPSITQK 324
               M  I  +   + T K
Sbjct: 400 IHRDMQAIQQRIQDTFTLK 418


>gi|257056384|ref|YP_003134216.1| site-specific recombinase XerD [Saccharomonospora viridis DSM
           43017]
 gi|256586256|gb|ACU97389.1| site-specific recombinase XerD [Saccharomonospora viridis DSM
           43017]
          Length = 402

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 55/306 (17%), Positives = 107/306 (34%), Gaps = 41/306 (13%)

Query: 40  ECDTR-----QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ------KIGDRSL 88
             D R     ++   L  +   +     +R +   +I A++             +G    
Sbjct: 92  RHDLRPSTWWKYRGLLDTHVNVRWGDVQLRAIRSEDIAAWLGSLLKSRTEGGSGLGPSQA 151

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN--VLLHTS 146
           + +   +   L +    K+   +    ++   +  +    L+ +Q   L +    L    
Sbjct: 152 RHAFRVLSMVLDWCVPAKLLR-NPAEGVKLPVRPETEHVYLSFEQVERLANAAGDLRTKY 210

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-------------- 192
                  + N A++ LL   GLR  EA +L    +   +  +R+                
Sbjct: 211 GRPTASASVNRALILLLAYTGLRWGEAAALRVGRVDLVKRRIRVVSTFYELNGVQHEGPP 270

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ-RYIRQLR 251
           K  K R V + PS+   + +                +F   RG  L    ++ R      
Sbjct: 271 KSGKHRTVAIPPSLVPELKQVIGGR------GDHELVFTTARGASLRANNWRVREFNPAV 324

Query: 252 RYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDW 309
           +   L  L  T H LRH+ A+  ++ G D++ +Q +LGH   + T  IY ++      D 
Sbjct: 325 KLAKLDGLGLTPHKLRHTAASLAIAAGADVKVLQHMLGHADAAMTLNIYGHL----FPDR 380

Query: 310 MMEIYD 315
           + E+ D
Sbjct: 381 LDEVAD 386


>gi|238025621|ref|YP_002909853.1| Phage integrase family protein [Burkholderia glumae BGR1]
 gi|237880286|gb|ACR32617.1| Phage integrase family protein [Burkholderia glumae BGR1]
          Length = 586

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 60/337 (17%), Positives = 116/337 (34%), Gaps = 59/337 (17%)

Query: 29  RGL-SKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTE---------------- 70
           RG  S  T ++Y  +  + L++      + ++ + T+    Y E                
Sbjct: 219 RGARSAQTQRAYRREAERLLLWAIVAKGKPLSSLNTLDVAEYLEQFLANPQPAERWIGRG 278

Query: 71  -IRAF-ISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN--LKKSNSL 125
            +  F ++ R     +  RS   +   + +   +L +++    +    +        ++ 
Sbjct: 279 GVERFDLAWRPFAGPLSARSRDTARRILTAMGAWLVRQQYLRVNPFEGLAAAAPVPIDTA 338

Query: 126 PRALNEKQALTLV------------DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
            R L   Q   ++            +      +   +    R++ +L L Y  GLR +E 
Sbjct: 339 GRTLTHAQWRYVLQTVWQPEPVLGAEPDRSDAARADRIRRQRDAFVLLLAYATGLRRAEL 398

Query: 174 LSLTPQN--------IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN- 224
            + T  +         ++D   LR+ GKG + R VP+   +   +          L+L  
Sbjct: 399 AAATTGDLSRKALDGALEDAYVLRVDGKGRRRREVPMPARLMNLLRAELRARAEPLSLET 458

Query: 225 ---------------IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
                             P   G   K +     +R               + H LRH+F
Sbjct: 459 APADTPLVAHLVTGAALHPNTIGALFKGIFARAAERLAPSYPGAAADLQRGSTHWLRHTF 518

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           A H L  G D+R +Q++LGH  L+TT  Y   ++   
Sbjct: 519 ANHGLDAGADIRDMQALLGHASLATTTHYAKGDAARQ 555


>gi|154000904|gb|ABS57020.1| integrase [uncultured bacterium]
          Length = 158

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 49/94 (52%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 65  RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 124

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           S AT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 125 SSATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|307287810|ref|ZP_07567848.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0109]
 gi|306501198|gb|EFM70503.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0109]
          Length = 378

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 117/330 (35%), Gaps = 48/330 (14%)

Query: 18  RQNWLQNLEIERGLS--KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            +N L +   +  LS  K ++++Y    +     +            IR       + FI
Sbjct: 65  LENLLNSWWQQHQLSIRKTSVKAYGKILKYIFSNMNVDVL-------IRNTDTKFFQDFI 117

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-------PRA 128
           +            K+  S +     Y +   +  E+ I  ++ +K   +         + 
Sbjct: 118 NDL---PHSWEYKKKFKSVLNMSFTYAQDMGMIDENPINRVKVVKPPLTKENFENIESKY 174

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L E++   L++         + +    +  +   +Y  GLR  EA+SLT  + + ++  +
Sbjct: 175 LEEREVYQLLNYYY------STFQSVHHGRLAEFMYLTGLRAGEAISLTINDYVKNEHAI 228

Query: 189 RIQGKGDKI-----------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            + G  D                   R V L     K I E                LF 
Sbjct: 229 LVNGTLDYSNGYKNATKELPKTLASFRKVELSNRAVKIIEELILEREIKFKEQTN-YLFV 287

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLG---LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           G  GKP+    F   +++    LG   +  + ++H  RHS  + L      +++I   +G
Sbjct: 288 GKTGKPIQVNSFNASLKKANESLGKNKINKTISSHIFRHSHISLLAELNVPVKAIMERVG 347

Query: 289 HFRLSTT-QIYTNVNSKNGGDWMMEIYDQT 317
           H    TT +IYT+V  K     ++E  ++ 
Sbjct: 348 HVDTETTLKIYTHVT-KKAKTNLVEALNKY 376


>gi|307268102|ref|ZP_07549490.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|295113806|emb|CBL32443.1| Site-specific recombinase XerD [Enterococcus sp. 7L76]
 gi|306515743|gb|EFM84270.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
          Length = 378

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 48/309 (15%), Positives = 114/309 (36%), Gaps = 38/309 (12%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S++T + Y+        ++            + QL+    + +++K   + +   ++ + 
Sbjct: 79  SEITYRKYKDTLNNIERYMPNII--------LSQLTRPLYQRYLNKFAEEHMK-STVIKF 129

Query: 92  LSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLP--RALNEKQALTLVDNVLLHTSHE 148
            + I++ LK   +  +         +   K+S+     + L+      L++  L     +
Sbjct: 130 NNHIRASLKDAVEEGLILFDPTRKAVIKGKESDKTKNDKFLDYGDFKRLME--LAEKGID 187

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK------------ 196
             +       ++ +    G+R +E L  T  +I  +   + I    +             
Sbjct: 188 PHYASPI---MVVVAGATGMRFAELLGTTWNDINFEDEIIDIHKTWNYKMNCWGKTKNES 244

Query: 197 -IRIVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
            IR + +     + + EY        +     N +  +F   +   ++     +Y+R+  
Sbjct: 245 SIRKIKIDFHTAQLLKEYKKAQKELFDKLEIQNPENFIFYNSQNGLISNNAVTKYLRKKL 304

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK---NGG 307
             +G+    T H LRH+ A+ LL  G D   +   LGH  L TT   Y ++  +      
Sbjct: 305 SEIGVTKKFTLHGLRHTHASVLLYQGCDTIYVSKRLGHSSLDTTITTYLHIIKELDNKND 364

Query: 308 DWMMEIYDQ 316
           + +  ++D+
Sbjct: 365 EMIDSVFDK 373


>gi|191638064|ref|YP_001987230.1| Integrase [Lactobacillus casei BL23]
 gi|4586564|dbj|BAA76437.1| integrase [Lactobacillus phage phiFSW]
 gi|190712366|emb|CAQ66372.1| Integrase [Lactobacillus casei BL23]
 gi|327385292|gb|AEA56766.1| Integrase family protein [Lactobacillus casei BD-II]
          Length = 394

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 57/335 (17%), Positives = 114/335 (34%), Gaps = 53/335 (15%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           +      W+  L++   + + ++  Y  + ++++I        KI    + + +  E + 
Sbjct: 70  MADYLNQWITKLKV--NVKEGSMIIYRYNLKKYII-------PKIGDIRLAKYTLKEHQE 120

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN---LKKSNSLPRALN 130
           FIS      +   ++K     + + LK        T++  + +      K ++       
Sbjct: 121 FISSLFNDGLSLNTVKLINGTLHNALKKAVAIGYITKNPTVGVEFSAYAKDNSKKLHFWT 180

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           + Q  + ++        E  W+          L  CGLR+ EA++L   +I   ++TL +
Sbjct: 181 KDQVGSFIEA--AEEDKEPMWLS-----FFVTLIDCGLRVGEAMALRWSDIDFSKNTLSV 233

Query: 191 QGKG---------------------DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--- 226
                                       R   +   V   + + Y+      N+      
Sbjct: 234 NATRIYRAETGSNAGKIALDRPKTLSSKRTEYMTARVNDLLQQQYERHFSHGNVQGFRFS 293

Query: 227 -----LPLFR----GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
                  +F        G+PL          ++    GLP     H LRH+ A  +   G
Sbjct: 294 TSHNNDFVFTYSSDAKFGQPLRSRATTGAFNRITNRAGLP-HIRIHDLRHTHAVLMREAG 352

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             L  I+  LGH  +STTQIY  ++     +   +
Sbjct: 353 LSLDDIKDDLGHKDISTTQIYAEISPAKKKENHQQ 387


>gi|223369828|gb|ACM88783.1| integrase [uncultured bacterium]
          Length = 163

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 37/111 (33%), Positives = 51/111 (45%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            G G       L    + A  E+     F  +     P    IR    +    Q  ++  
Sbjct: 52  HGYGQVYLPFALERKYQNANREWAWQYVFPSDRLSTDPHDGQIRRHHRDERGLQSAVKVA 111

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            R  G+    + HT RHSFATHLL NG D+R++Q +LGH  + TT IYT+V
Sbjct: 112 VRAAGIAKPASCHTFRHSFATHLLENGYDIRTVQELLGHANVKTTMIYTHV 162


>gi|218905481|ref|YP_002453315.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus cereus AH820]
 gi|218537626|gb|ACK90024.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus cereus AH820]
          Length = 319

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 61/298 (20%), Positives = 115/298 (38%), Gaps = 19/298 (6%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           VS E     +++L   + + G +  TLQ Y  D R  L  +  + E K     + +L+  
Sbjct: 14  VSQENKNLVKDFLIEKKAQ-GKAASTLQQYNWDLRIILFLIHEHFENK----NLIELTRK 68

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT--TESNILNMRN-LKKSNSLP 126
           +IR      +  ++ +  +   +S ++S L++           +    +R   +      
Sbjct: 69  DIRNLSIIFQEMRMSNARVNGLMSALRSALEFCADDDDYNYEFNVGSRVRGLPQNPIREI 128

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             + + Q   L+D +L              +  L L Y    R +E   +  + + +   
Sbjct: 129 TFITDDQINWLIDELLEQEK-------YMLATYLALSYYSAARKNEVYQVQKEELTERYY 181

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           T  ++GK  K   +   P V+K I  Y +    D   ++ + +++    K LN  VF  +
Sbjct: 182 TNIVRGKRGKKFRLYYNPRVQKCIRLYINQRGKDTIPDLFVRVYKNGERKLLNKSVFNYW 241

Query: 247 IRQLRRYL----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            +   + L    G       H  RHS   +L   G  L  ++S+  H  +STTQ Y  
Sbjct: 242 CKIFAKMLYEKEGKEYKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSYLK 299


>gi|149913589|ref|ZP_01902122.1| phage integrase [Roseobacter sp. AzwK-3b]
 gi|149812709|gb|EDM72538.1| phage integrase [Roseobacter sp. AzwK-3b]
          Length = 224

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 88/242 (36%), Gaps = 30/242 (12%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ  ++++ I RG+     +++    + F  FL           +    +  E+RA+   
Sbjct: 10  RQRMIEDMRI-RGMGDKAQKAHIRAIKDFTAFLGH---------SPDTATPEELRAYQLH 59

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                +   +    +  ++ F      R+         M+   +   LP  L+ ++   +
Sbjct: 60  MTDTGVTASTFNARIVALRFFFGMTCGREEMK----RYMQFRTEPRKLPVVLSVEEVSDI 115

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196
           +                +  A L + YG GLR +E  +L   +I  D+  + + QGKG K
Sbjct: 116 LMA--------APGPGLKYRAALSISYGAGLRAAEVCNLKVSDIDSDRMLIHVEQGKGQK 167

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLG 255
            R V L P +   +  ++           +  LF G  +  P++P    R     +   G
Sbjct: 168 DRKVMLSPGLLDLLRTWWR------GARPEGWLFPGKPKINPISPRQLNRAFSSAKHMAG 221

Query: 256 LP 257
           + 
Sbjct: 222 VT 223


>gi|86739852|ref|YP_480252.1| phage integrase [Frankia sp. CcI3]
 gi|86566714|gb|ABD10523.1| phage integrase [Frankia sp. CcI3]
          Length = 422

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 64/330 (19%), Positives = 116/330 (35%), Gaps = 67/330 (20%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT------------ 80
             T  +YE   R +LI         +  + + +LS  ++R FI +  T            
Sbjct: 102 PNTYVTYEKAVRLYLI-------PGLGKKRLNRLSGADVRQFIRRTETTCRCCEMGRDKA 154

Query: 81  ----------------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
                           ++   R ++   + +++ L+   + ++   +    ++      +
Sbjct: 155 RPEQERRCCAVGQCCNRRPSKRQVQVVHAVLRNALQAAVREELIRRNVAKLVQVSTPRYN 214

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           + R L  +QA  L+D          +    R  A+L L    G+R  E L L   +I  D
Sbjct: 215 VDRGLTVEQAHRLLD----------EAAGNRLYALLVLALFLGMRRGELLGLQWSDIDTD 264

Query: 185 QSTLRIQGK---------------GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
           + TL I+                  D  R + LL  V  A+ E+  L   + +      +
Sbjct: 265 RETLTIRHTLQRVGGELRLLPPKTEDSERTLSLLGLVADALTEHRKLQQAERDAAGDRWV 324

Query: 230 -----FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
                F    G  + P   +R+   LR+  GL      H LRH+  T LL  G     ++
Sbjct: 325 TTDHVFTTKIGTAIEPDNLRRFWMPLRQAAGLD-GVVFHGLRHTCVTLLLDLGVPPHIVR 383

Query: 285 SILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
            I GH  +  T  IY + +       +  +
Sbjct: 384 DIAGHSAIEVTMTIYAHASMGEKRRALGRL 413


>gi|89147646|gb|ABD62682.1| integrase [uncultured bacterium]
          Length = 163

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 34/93 (36%), Positives = 45/93 (48%)

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           A  E+     F        P     R   L+    Q+ +R   R  G+    T HT RHS
Sbjct: 70  ANREWGWHYVFPAKSRSADPRTGIERRHHLDESSLQKAVRAAARLAGIAKHVTCHTFRHS 129

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           FAT LL  G D+R++Q +LGH  + TT IYT+V
Sbjct: 130 FATQLLEAGYDIRTVQELLGHQDVKTTMIYTHV 162


>gi|229061589|ref|ZP_04198932.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus AH603]
 gi|228717710|gb|EEL69361.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus AH603]
          Length = 362

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 105/292 (35%), Gaps = 37/292 (12%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             TL  Y+   R            +   + +  +    +  F  K   + +  + +    
Sbjct: 66  PSTLYQYKRILRS-------RVMPEFGEKRLSDIKPLTVHNFHQKLLKEGLTTKYISSVD 118

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +K  L    + ++   +     +  K       +   ++A+  ++   +  S+   ++
Sbjct: 119 VMLKQILDKGVELEMINSNPAKKAKRPKVKKKAQASWTIEEAMKFMEYAKIQGSYYITFV 178

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---------------GKGDKI 197
                    L    G+RI E L+L   +I  +  T+ +Q                     
Sbjct: 179 ---------LALHTGMRIGEVLALKWNDINFENKTIHVQRTLTLVDGKYELGETKTEASN 229

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RI+P+   +   +LEY +        N    L      K ++P   +  ++ L   + +P
Sbjct: 230 RIIPMTEELMGELLEYQNHK----KENSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVP 285

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
                H +R +F T L+ +G + + +  +LGH  +STT  IYT+V  +   +
Sbjct: 286 Y-IRFHDIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDVYEERQIE 336


>gi|183602443|ref|ZP_02963809.1| phage-related integrase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219683244|ref|YP_002469627.1| phage-related integrase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241191203|ref|YP_002968597.1| phage-related integrase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196609|ref|YP_002970164.1| phage-related integrase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|183218362|gb|EDT89007.1| phage-related integrase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219620894|gb|ACL29051.1| phage-related integrase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240249595|gb|ACS46535.1| phage-related integrase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240251163|gb|ACS48102.1| phage-related integrase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|289177317|gb|ADC84563.1| DNA integration/recombination/inversion protein [Bifidobacterium
           animalis subsp. lactis BB-12]
 gi|295794196|gb|ADG33731.1| phage-related integrase [Bifidobacterium animalis subsp. lactis V9]
          Length = 366

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 99/289 (34%), Gaps = 32/289 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
              +   +   + +  + + E++ +++K   +      + R+   +K  LK   K ++  
Sbjct: 93  WNKHVGPQWGARKVGSIRHDEVQEWVNKLAGE-YSASVVIRARDMLKGLLKAAVKNRLIA 151

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
            +   ++   +K       L  +Q + L D                    +  L   G+R
Sbjct: 152 SNPADDITVPRKKRKDHVYLTAEQLMALADE------------AGWRRPAVLALGTTGMR 199

Query: 170 ISEALSLTPQNIMDDQSTLRIQGK---------GDKIRIVPLLPSVRKAILEYYDLCPFD 220
             E + L  +++      LRI+               +          AILE   L    
Sbjct: 200 WGELVGLRVRDLDAKGHRLRIERNAVEVKGEVVIGTPKTYEKRTITYPAILE-PMLVEMA 258

Query: 221 LNLNIQLPLFRGIRGKPLNP----GVFQRYIRQLRRYL---GLPLSTTAHTLRHSFATHL 273
              +   PLF   +GK L           +    ++      L    T H LRH+ A+ L
Sbjct: 259 QGRDGDEPLFVDQQGKMLRRTHGPNSPSSWFYWAKKRALGDVLARKMTVHDLRHTAASLL 318

Query: 274 LSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPSI 321
           +S G +++ +Q  LGH   + T   Y ++   +  D +    D   P+ 
Sbjct: 319 VSAGANVKVVQRQLGHESAAMTLDTYADLFDADL-DVVRVEMDSIFPAA 366


>gi|254248336|ref|ZP_04941656.1| Phage integrase [Burkholderia cenocepacia PC184]
 gi|124874837|gb|EAY64827.1| Phage integrase [Burkholderia cenocepacia PC184]
          Length = 431

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 65/367 (17%), Positives = 123/367 (33%), Gaps = 59/367 (16%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
            G+  P+I +   L   + WL         +  T Q+Y  +  + L++      + ++  
Sbjct: 67  SGSAHPQIAATNDLDAVRAWLARFVD----TPTTFQNYRKEAERLLLWAVIACGKPLS-- 120

Query: 62  TIRQLSYTEIRAFIS-------KRRTQK----------------IGDRSLKRSLSGIKSF 98
           ++        R F+                              +   S +++L  +   
Sbjct: 121 SLTHEDLVVYRQFLLAPAPAELWCANGGRKHPRDDPRWRPFYGPLSAASQRQALVILNVM 180

Query: 99  LKYLKKRKITTESNIL--NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
             +L +      + +     R  + +  + R L +    ++ D +      + +     +
Sbjct: 181 FSWLVQAGYLAGNPLALSRQRQRRPAPRVTRHLGQPLWQSVKDAIAAMPRDDARACFHAD 240

Query: 157 SA--ILYLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSVR 207
            A  +  LLY  GLRI+EA   T             ++  L + GKG + R+VP    + 
Sbjct: 241 RARWLFTLLYLGGLRITEAADTTMGQFFCRRDANGHERWWLDVTGKGGRQRLVPATDEMM 300

Query: 208 KAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLG-------- 255
             +  Y              P    L  G   KPL      R ++Q+ R+          
Sbjct: 301 AELARYRRTHGLPALPLDGEPTPLVLPFGQARKPLTRAALHRIVKQVFRHAAGRLRANGK 360

Query: 256 -------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                  +    +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +      
Sbjct: 361 TGEQAARVLEQASAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHADDDWRHR 420

Query: 309 WMMEIYD 315
              E + 
Sbjct: 421 ETEEKHR 427


>gi|194466593|ref|ZP_03072580.1| integrase family protein [Lactobacillus reuteri 100-23]
 gi|194453629|gb|EDX42526.1| integrase family protein [Lactobacillus reuteri 100-23]
          Length = 370

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 99/258 (38%), Gaps = 24/258 (9%)

Query: 63  IRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLK 120
           +  +    +  ++      +   + S+++    + + L+Y KK      + I     N K
Sbjct: 109 VANIKPVLLSNYLDDLIYKKNYKNSSVQKFKGTLGNLLRYAKKHNYIKTNPIKEADVNYK 168

Query: 121 KS----NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           KS        +  +E++   ++  +   + H  ++           LY  GLR  EA +L
Sbjct: 169 KSSAADKIEEKYFDEEELNKILKYMYKRSPHYGRFC--------EFLYQTGLRFGEAAAL 220

Query: 177 TPQNIMDDQS--------TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
            P +I++           TL  + K    +       V         +   +   N    
Sbjct: 221 IPNDIIEKDGKQVAVINSTLVNKKKQPSPKTAKSNRDVTLPKRALEIIHDEEKEANGTQF 280

Query: 229 LFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           +F   R   P+N      ++R+ ++ L +   TT HT RH+  + L   G  L  IQ+ +
Sbjct: 281 IFSSGRYGYPMNNTTLNDWLREAKKELNIQKITTVHTFRHTHISKLAELGVPLYLIQNRV 340

Query: 288 GHFRLSTTQ-IYTNVNSK 304
           GH   +TT+ IY +V  K
Sbjct: 341 GHKDATTTKDIYLHVTKK 358


>gi|332311627|gb|EGJ24722.1| Integrase [Listeria monocytogenes str. Scott A]
          Length = 410

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 114/292 (39%), Gaps = 37/292 (12%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T+  Y+    QF+ +     +EKI   +I  + Y   + FI+          ++   
Sbjct: 102 SQSTINLYDLAYNQFVDYF----DEKIKFNSIDAVQY---QQFINHLSVD-YAISTVDTR 153

Query: 92  LSGIKSFLKYLKKRKITTESNIL--NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
              I++            ++  +  ++     + +  + +   +   L++        E 
Sbjct: 154 HRKIRAIFNKAVHLGYMKKNPTIGAHISGQDVAKNKAQFMETDKVHLLLE--------EL 205

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-------------KGDK 196
               + + A+++L    G+R  E ++LT ++I   + ++ +               K  K
Sbjct: 206 AKFHSISRAVIFLAVQTGMRFEEIIALTKKDINFTKRSITVNKAWDYKYTNTFIDTKTKK 265

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLN----LNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
            R++ +  S  + +  Y +     +      N  + LF     KP++     + ++++  
Sbjct: 266 SRVIYIDNSTAQYLHSYLNWHTEYMKEHAIKNPLMLLFITYHNKPVDNASCNKALKKICS 325

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
            +      T H LRH+     +  G D+  +   LGH  ++TT + Y++++S
Sbjct: 326 TIN-SEPVTLHKLRHTHTGLCVEAGMDIIYVADRLGHDDINTTLKYYSHLSS 376


>gi|312111597|ref|YP_003989913.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|312112615|ref|YP_003990931.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|311216698|gb|ADP75302.1| integrase family protein [Geobacillus sp. Y4.1MC1]
 gi|311217716|gb|ADP76320.1| integrase family protein [Geobacillus sp. Y4.1MC1]
          Length = 703

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 58/344 (16%), Positives = 124/344 (36%), Gaps = 40/344 (11%)

Query: 5   NLPEIVSFELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           +  +I    + ++ + ++ Q L  +   S  T Q+Y      F+ F+      + T   +
Sbjct: 222 DFKKIEQRAIREQVKKYIKQRLLSKNNFSWGTAQTYMKYLTPFIAFIFSL---EPTWNDL 278

Query: 64  RQLSYTEIRAFISKRRTQKIGD---------RSLKRSLSGIKSFLK--YLKKRKITTESN 112
           +QL  + +  +I         +           + +SL+ I+ FL+     +  I  E++
Sbjct: 279 KQLKRSHMEQYIQWLHEYAKSNLKKKNANPEHHISKSLNIIQKFLEDIQRYEYDIAPETH 338

Query: 113 ILNM----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
           +  +       K+        +  Q   + D VL         +      ++++ +  GL
Sbjct: 339 VSLLIFPEDKPKQKKK-----SIDQIDYIPDYVLEQLFAHINELHEDVQPVIWVAFKTGL 393

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK------AILEYYDLCPFDLN 222
           RIS+ L LT   ++       I+   +K  +      +        A+L    +   + +
Sbjct: 394 RISDVLGLTQDCLVKLNGKYYIETDIEKTYVKGHRIPIDDELASILAVLIDKSIKNSNDD 453

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT----------AHTLRHSFATH 272
            N +  +F   RG        Q+++++    L      T           H  RH++A  
Sbjct: 454 NNPEKYIFVRYRGSRKGKPFIQKWVQKQLNTLAKTKHITDENGNLFHFKTHQFRHTYAVK 513

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +L++G D+ ++Q +L H     T  Y  +          E   Q
Sbjct: 514 MLNSGADILTVQELLAHASPEMTMRYAKLLDNTKRKAFEEAIKQ 557


>gi|254977275|ref|ZP_05273747.1| integrase [Clostridium difficile QCD-66c26]
 gi|255094604|ref|ZP_05324082.1| integrase [Clostridium difficile CIP 107932]
 gi|255316360|ref|ZP_05357943.1| integrase [Clostridium difficile QCD-76w55]
 gi|255519019|ref|ZP_05386695.1| integrase [Clostridium difficile QCD-97b34]
 gi|255652201|ref|ZP_05399103.1| integrase [Clostridium difficile QCD-37x79]
 gi|260685158|ref|YP_003216443.1| integrase [Clostridium difficile CD196]
 gi|260688816|ref|YP_003219950.1| integrase [Clostridium difficile R20291]
 gi|306521924|ref|ZP_07408271.1| integrase [Clostridium difficile QCD-32g58]
 gi|260211321|emb|CBA66919.1| integrase [Clostridium difficile CD196]
 gi|260214833|emb|CBE07592.1| integrase [Clostridium difficile R20291]
          Length = 393

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 49/294 (16%), Positives = 104/294 (35%), Gaps = 30/294 (10%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           RQ+L  +     + + ++ I  +  ++ + +  +   +    +++      +K+      
Sbjct: 104 RQYL--VNALENDPLGMRAIDTVKQSDAKEWAIRMNGKGYSYKTIDNYKRSLKASFYMAI 161

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           +     ++      N K S+ L      K  LT      L    ET  + ++    + LL
Sbjct: 162 QDDCIRKNPF----NSKLSDVLEDDTEAKVILTPEQEEKLLAFMETDNVYSKYRDEVILL 217

Query: 164 YGCGLRISEALSLTPQNIMDDQ---------------STLRIQGKGDKIRIVPLLPSVRK 208
              GLRISE   LT    M ++                 +      +  R +PL     +
Sbjct: 218 LETGLRISELCGLTTHIDMLNRVINIDHQLLRDTEVGYYISKAKTKNGKRELPLTERAYQ 277

Query: 209 AILEYYDLC---PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS-----T 260
           A+             +       LF    G P   G ++  +R L +             
Sbjct: 278 ALKRILKNRGKAQPLVVGGYSNFLFLNREGLPKVAGNYESMVRGLIKKYNKTHKDKLPNI 337

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
           T H+ RH++ T++ + G +  ++Q I+GH  ++ T   Y +   ++    +  +
Sbjct: 338 TPHSFRHTYCTNMANKGMNPNTLQYIMGHANITMTLGYYAHGTFQSAKAELERL 391


>gi|89147553|gb|ABD62636.1| integrase [uncultured bacterium]
 gi|89147624|gb|ABD62671.1| integrase [uncultured bacterium]
          Length = 163

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 70/162 (43%), Gaps = 37/162 (22%)

Query: 177 TPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAIL------------------------ 211
             +++  ++  + ++G KGDK R+V +   ++  +                         
Sbjct: 1   RVKDVDFERGVITVRGGKGDKDRVVMMPDKLKTDLWTHLARVKLLHQKDAANGYGAVYLQ 60

Query: 212 ------------EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
                       E+     F        P+ R +R   L+  V Q+ IR   R  GL   
Sbjct: 61  NALDRKYPAAPMEWMWQYVFPAATLSVDPVTRQVRRHHLHDSVIQKAIRDASRLSGLNKL 120

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              HTLRHSFATHLL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 121 IGPHTLRHSFATHLLESGSDIRTVQELLGHKHVQTTMIYTHV 162


>gi|312872314|ref|ZP_07732384.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2062A-h1]
 gi|311092137|gb|EFQ50511.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2062A-h1]
          Length = 372

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 108/283 (38%), Gaps = 41/283 (14%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
              + +     Q I +++  +++ +  K+ T+ +  R   R ++ +    +Y  +    +
Sbjct: 99  YKNHIKPFFGNQFIDKITVVDLQKWADKKATELVAFR---RVIAVMNGLFEYGMRLNYVS 155

Query: 110 ESNILNMRNLKKSNSLPR-----ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLY 164
            + +  +   KK+    R         K+  T +           K           +L 
Sbjct: 156 SNLVKRVLIPKKTARKRRDTEKNVYTRKELETFLKV--------AKNFPIMKYTFFKILA 207

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGK----------------GDKIRIVPLLPSVRK 208
             GLR SE L+LT Q+I    + L +                       R +P+  S+RK
Sbjct: 208 CTGLRRSECLALTWQDIDFKNNLLHVNKTLAYGLNHQVIVQTPKSKKSNRKIPISSSLRK 267

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           A++EY      D        LF  + GK L  G    +++++          T H  RH+
Sbjct: 268 ALIEYQKQATHDK-------LFHTLNGKYLYLGTPNIWLKKIYDKNPDLKKITVHGFRHT 320

Query: 269 FATHLL-SNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDW 309
           FAT L+       +++Q ILGH  +  T  +YT++N  N  + 
Sbjct: 321 FATLLISETNVKPKTVQMILGHKNIEITLNLYTHINQDNQIEA 363


>gi|223369822|gb|ACM88780.1| integrase [uncultured bacterium]
          Length = 163

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 35/91 (38%), Positives = 50/91 (54%)

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            E+     F  +     P     R   ++  V Q  +++  R  G+    + HTLRHSFA
Sbjct: 72  REWSWQFVFPSSRISMDPRTSTRRRHHVDENVLQVAVKRAVRASGVTKPASCHTLRHSFA 131

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           THLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 132 THLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|296106652|ref|YP_003618352.1| hypothetical protein lpa_01609 [Legionella pneumophila 2300/99
           Alcoy]
 gi|295648553|gb|ADG24400.1| hypothetical protein lpa_01609 [Legionella pneumophila 2300/99
           Alcoy]
          Length = 191

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 49/193 (25%), Positives = 75/193 (38%), Gaps = 16/193 (8%)

Query: 116 MRNLKK----SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
           M+  KK           L   +   L+      ++ +      R+S ++ + Y   LR+S
Sbjct: 1   MKPPKKVKNSERRAREYLTPAEVDKLI-----ASAKQLGRHGLRDSTMILIAYRHELRVS 55

Query: 172 EALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
           E +SL    I   Q  L  I+ K       PL     +A+           +      +F
Sbjct: 56  ELISLRWSQIDLKQGLLHVIRKKNGIPASHPLFGPEIRAL------RQLKRDYPETDYVF 109

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
              R  P+    F++ I +      L L+T  H LRHS    L ++G D RSIQ  LGH 
Sbjct: 110 MTERKAPITADTFRKIIARAGEKAELGLATYPHMLRHSTGFKLANDGRDTRSIQHYLGHK 169

Query: 291 RLSTTQIYTNVNS 303
            +  T  YT + S
Sbjct: 170 NIQHTVRYTEIAS 182


>gi|17158647|ref|NP_478158.1| integrase-recombinase protein [Nostoc sp. PCC 7120]
 gi|17134596|dbj|BAB77154.1| integrase-recombinase protein [Nostoc sp. PCC 7120]
          Length = 360

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 57/300 (19%), Positives = 106/300 (35%), Gaps = 45/300 (15%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ---------- 81
           S  T ++Y     Q    L  Y   +  I  +R ++   + A+++  + +          
Sbjct: 57  SDQTRRAYR----QIGYELVDYMHSRFGISDLRMVTLFHLHAYLTWLKDEKPVRGKKNTY 112

Query: 82  KIGDRSLKRSLSGIKSFLKY--LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            I   +  +  + IKS  ++               ++          R L+E++   L  
Sbjct: 113 GISKNTAAKYTAAIKSLWEWGTRASIGYFAIDLGKDLSIQWDDKLAERILSEREIAKLEK 172

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL-------------SLTPQNIMDDQS 186
             +          +  +  +  L++  G+R  E                L  +   +D  
Sbjct: 173 AAM--AVDLQHNTNKMHWLLFTLVFYSGVRAGEIARQTSDYGKRVITPGLFWRQFREDGD 230

Query: 187 TL--RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI----RGKPLNP 240
            L   + GK +K R + L P     +L+Y      D       P+F       RGKPL+ 
Sbjct: 231 CLLLTVTGKRNKTRTISLDPETSAVLLDYRGDASND------QPVFPSPSRRDRGKPLSD 284

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              +  + ++    G+    +AH LRH+ AT    NG     +Q+ LGH   +TT  Y +
Sbjct: 285 RGLRLMMEEISACAGIKF--SAHFLRHTHATLAKKNGASDFDLQADLGHASPATTAKYIH 342


>gi|317133857|ref|YP_004089768.1| integrase family protein [Ruminococcus albus 7]
 gi|315450319|gb|ADU23882.1| integrase family protein [Ruminococcus albus 7]
          Length = 289

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 55/285 (19%), Positives = 109/285 (38%), Gaps = 28/285 (9%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102
            R+    L  Y E  I+ Q + +L     R  +S+   Q +           ++ F  +L
Sbjct: 4   LRKLNNSLNTYYEHHISDQMVEELLAP--RDGLSELERQYLTAN--------LRQFCSFL 53

Query: 103 KKRKITTES-NILNMRNLKKSNSLPRALNEKQALTL-VDNVLLHTSHETKWIDARNSAIL 160
               I         MR +K     P   ++ +   L +    L  S ++         ++
Sbjct: 54  ALLGIDAVIVPRKYMRTVKSEFR-PYIFSDDELRRLTIAADTLPASRKSSSHQQIYPVLV 112

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
            LL G G+RI E L+L   N+      +  I GK    R +P+  S+++ + +Y      
Sbjct: 113 RLLIGTGMRIGEVLALKRANVDTSNGVINVINGKNGVSRFIPVSDSLKEVLFDY--AKTI 170

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL--STTA--HTLRHSFAT---- 271
           D++   +        G  L     +    ++ +  G+      T   H++RH+F T    
Sbjct: 171 DMSDENRPFFTSSYTGGHLTYDAMKYMFPKMFKTAGIHKSDGKTPNIHSIRHTFCTKSLE 230

Query: 272 HLLSNGGDLRS----IQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            +L NG ++ +    + + +GH     T+ Y +   +   D++ +
Sbjct: 231 KMLENGMNVYTAIPILAAYVGHVNYIDTEKYIHFTEQGHTDFLQK 275


>gi|300742464|ref|ZP_07072485.1| phage integrase family protein [Rothia dentocariosa M567]
 gi|300381649|gb|EFJ78211.1| phage integrase family protein [Rothia dentocariosa M567]
          Length = 225

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 83/241 (34%), Gaps = 28/241 (11%)

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           I           + K +L  I  F +YL   +   +     + ++ +     RA+     
Sbjct: 9   IKWLANPNWQPATRKSALQSIHLFFRYLISTETREDDPTHLIPSIPQPRYHSRAIPSSVI 68

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
              +           +        ++ L    GLR SE  +L  QN  D    + I GKG
Sbjct: 69  TQAL----------RRTTSVEEEFMILLGAYAGLRRSEIAALHTQNYAD--KWISITGKG 116

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
              R +         +L Y       L        F G      +     + I +     
Sbjct: 117 GHTRHI----PAHALLLPY-------LESKSTGYYFAGRFTGHRSADNIAKKISR----- 160

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            L    T H LRH FAT + +   +LR++Q +LGH  +STTQ Y  V   +    +  + 
Sbjct: 161 NLGQDYTPHQLRHWFATTVYAESHNLRAVQELLGHADISTTQRYIGVLDNDLSTAINTLP 220

Query: 315 D 315
           D
Sbjct: 221 D 221


>gi|223369832|gb|ACM88785.1| integrase [uncultured bacterium]
          Length = 163

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 39/111 (35%), Positives = 55/111 (49%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +G G       L      A  E+     F  N     P    +R    +  + QR +++ 
Sbjct: 52  RGYGKVYLPYALGRKYPTAATEWGWQWVFPANRLSVDPRSGVVRRHHASEDMLQRSVKKA 111

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            R  G+    + HTLRHSFATHLL +G D+R+IQ +LGH  + TT IYT+V
Sbjct: 112 IREAGISKHASCHTLRHSFATHLLEDGYDIRTIQELLGHADVQTTMIYTHV 162


>gi|160934939|ref|ZP_02082325.1| hypothetical protein CLOLEP_03814 [Clostridium leptum DSM 753]
 gi|156866392|gb|EDO59764.1| hypothetical protein CLOLEP_03814 [Clostridium leptum DSM 753]
          Length = 345

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 97/265 (36%), Gaps = 40/265 (15%)

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           L    I+ F ++ + + +   S+    + I   LKY  K  + +++  + +   KK++  
Sbjct: 53  LVPRHIQQFYTE-KLKTVKPNSVIHYHAVIHQALKYALKTDLVSQNVAVKVDRPKKNDFQ 111

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P  L+  +   L + +        K        ++   Y  GLR  E   L    I  ++
Sbjct: 112 PVFLDVAERQHLFEVI--------KCTKLELPVLVAAFY--GLRRGEVCGLKWDAIDFER 161

Query: 186 STLRIQ--------------------GKGDKIRIVPL-------LPSVRKAILEYYDLCP 218
            TL ++                         +R +PL          V++A      +C 
Sbjct: 162 GTLTVKRTVTSIQLDGKTQMIEQESAKTKSSMRTLPLVSSFKEYFQKVKEAQALNKKVCG 221

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
              N      +F    G  L P           +  G+      H LRHS A+ LL+NG 
Sbjct: 222 NCYNYEYDGFVFVDEMGDLLKPDCLTTQFPAFIQRHGM-KKMRFHDLRHSCASLLLANGV 280

Query: 279 DLRSIQSILGHFRLSTTQ-IYTNVN 302
            L+ IQ  LGH   STT  IY +++
Sbjct: 281 HLKQIQDWLGHSDFSTTANIYAHLD 305


>gi|240948188|ref|ZP_04752588.1| phage integrase family protein [Actinobacillus minor NM305]
 gi|240297481|gb|EER47995.1| phage integrase family protein [Actinobacillus minor NM305]
          Length = 420

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 115/278 (41%), Gaps = 22/278 (7%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK--RRTQKIGDRSLKRSLSG 94
           +S++ D  +F +++  Y  + I    ++ L   +I++ +       +     +  R+++ 
Sbjct: 148 RSWDKDESRFRLYIEPYIGKVI-YSDLKALQIYQIQSDMISGNHYPRAFSPATCNRTIAL 206

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +K+   +  + +  +E+  L +  LK++N   R  + ++   L+        H   + + 
Sbjct: 207 LKTMGNFAYRLEYISENVALKVPLLKENNQRSRYFSLEEMKALLY-------HAEFYPNK 259

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213
              +++ LL   G R +E      + +  +   L +   K  K R + L           
Sbjct: 260 YAGSLIALLLLTGARRNELQQAKWEYLDVNAQILYVPNTKNGKPREIYLSDEAM------ 313

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP--LSTTAHTLRHSFAT 271
           Y L   + ++       R    KP++   F   ++QL +  G+        HT RHS AT
Sbjct: 314 YWLNRLERDVGNPYIFARKGSVKPISAPRF--ALKQLLKKAGITDIDGICFHTARHSVAT 371

Query: 272 HLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            L+S+G  +L  +++ L H  + ++Q Y  +      +
Sbjct: 372 LLISSGKFNLYDVKAQLAHASIQSSQRYAKLTENRQRE 409


>gi|268610075|ref|ZP_06143802.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Ruminococcus flavefaciens FD-1]
          Length = 395

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 51/340 (15%), Positives = 109/340 (32%), Gaps = 56/340 (16%)

Query: 19  QNWLQNLEIER----GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
            ++L    IE      L   T+ +Y+   R        +   KI    +  ++  +++  
Sbjct: 66  HDYLNY-WIEMYCIPNLKPTTVANYKKYIR-------LHISPKIGKYRLATITAEQLQKL 117

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQ 133
           I+          ++      + S L Y  +       S +  ++  K S +     + + 
Sbjct: 118 INDMVANGYSKNTVIGIKGVLSSSLNYAVQPLHYLKTSPMAYVKIPKGSRT--NYRSSQY 175

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG- 192
              +++  ++          +     L   Y CG+R+ EA ++T  N+     T+ I   
Sbjct: 176 KREVIEKDIIDEIFVRFPKGSSTYLPLMFAYHCGMRLGEAFAITWDNVNFTDRTVTINKQ 235

Query: 193 ---------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-------- 229
                          K +  R + +  ++ + + E  +                      
Sbjct: 236 LQWDLEKKFWYLTPPKYNSSRTIDIDETIVELLKEMQEKQIRAKEYYADEYSLIYYDEEL 295

Query: 230 -----------FRGIRGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
                      F  +      + P   Q   + + +      + T H+LRH+  T LL  
Sbjct: 296 GINESTGNVIDFVNVYENGGFIQPRTIQHTSQVIHK---FYPAFTFHSLRHTHCTRLLEA 352

Query: 277 GGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYD 315
           G  ++ +Q  LGH  +S T  IY ++           + D
Sbjct: 353 GLPIKYVQERLGHKNISVTMDIYNHLTQSQAELSKRALED 392


>gi|120554184|ref|YP_958535.1| phage integrase family protein [Marinobacter aquaeolei VT8]
 gi|120324033|gb|ABM18348.1| phage integrase family protein [Marinobacter aquaeolei VT8]
          Length = 246

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 58/247 (23%), Positives = 107/247 (43%), Gaps = 27/247 (10%)

Query: 84  GDRSLKRSLSGIKSF-------LKYLKKRKITTESNILNMRNLKKS--NSLPRALNEKQA 134
             RS  R+ S  + F       + +  +R       ++  R +     +++P+ L + + 
Sbjct: 7   SARSFPRARSSKRPFGFEERPVVSFPIQRVEIDWDRLIAKRPMLLESLDTMPKYLLKPEI 66

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           L L+++               +  IL L++  G R+SE L++TP + +DD     +  K 
Sbjct: 67  LGLLESE----------SHPMHRLILDLMWCTGARVSEVLAITPASFIDDGYDFGVMLKT 116

Query: 195 DKIRI-VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-----RGKPLNPGVFQRYIR 248
            K     P   S++++   +  +   D    IQ  L+ G      R  P+        I 
Sbjct: 117 LKQGAGRPSKRSLQRSPKRFIPILDRDFQTRIQSYLWMGKFRKDERIFPITRQAVSANID 176

Query: 249 QLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +L   +G   P     HT RHSFA HLL +G  L+ +  +LGH  + + ++YTNV + +G
Sbjct: 177 RLIDQVGGEPPFKIGCHTFRHSFAVHLLLHGRPLKFVSQLLGHRSVESPEVYTNVLTFDG 236

Query: 307 GDWMMEI 313
             ++  +
Sbjct: 237 AHFLEGV 243


>gi|323493805|ref|ZP_08098923.1| integrase [Vibrio brasiliensis LMG 20546]
 gi|323311939|gb|EGA65085.1| integrase [Vibrio brasiliensis LMG 20546]
          Length = 342

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 59/299 (19%), Positives = 109/299 (36%), Gaps = 46/299 (15%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           K T  +Y                 ++   T+  +  T I  +  +R  +     +++R  
Sbjct: 75  KRTAANYRKKVELIC--------RELGDPTVNNIDATLISNWQLERMARGQKANTVRRLT 126

Query: 93  SGIKSFLKYLKKRK-ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           S + +    L +    T    + +++      S    L  KQ   L+D +          
Sbjct: 127 SCLSNVFSVLIETGDFTGAHPLKDLKQPAPEKSEMTYLTLKQTQDLLDYLK--------- 177

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
            D     I+ +    G R  E ++L   N+   +       K  K R VP+   +   I 
Sbjct: 178 NDWELLKIVEISLATGSRWRETVTLKSSNLSPYRIRFT-NTKTGKPRTVPISKQLYDDI- 235

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSF 269
            Y +      + + Q+ L R                  +   LG  LP     H LRH+F
Sbjct: 236 -YPENGGNLFSEDPQVRLVR------------------IFDKLGFDLPKGQKVHVLRHTF 276

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           A+H + NGGD+ +++ ILGH  ++ T  Y ++   +  D +     + +P    +D +N
Sbjct: 277 ASHFVMNGGDILTLKEILGHASINQTMTYAHLAPDHLIDAV-----KLNPLNKLRDPQN 330


>gi|331681294|ref|ZP_08381931.1| type 1 fimbriae regulatory protein FimB [Escherichia coli H299]
 gi|331081515|gb|EGI52676.1| type 1 fimbriae regulatory protein FimB [Escherichia coli H299]
          Length = 200

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 66/181 (36%), Gaps = 8/181 (4%)

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K  N     L   +  +L+       +  T    ARN  +  L +  G R SE   L   
Sbjct: 4   KADNKKRNFLTHSEIESLL------KAANTGPHAARNYCLTLLCFIHGFRASEICRLRIS 57

Query: 180 NIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           +I      + I   K       PLL    +A+  +  +     +   +  +F   +G PL
Sbjct: 58  DIDLKAKCIYIHRLKKGFSTTHPLLNKEVQALKNWLSIRTSYPHAESE-WVFLSRKGNPL 116

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +   F   I       GL L    H LRHS    L + G D R I+  LGH  +  T  Y
Sbjct: 117 SRQQFYHIISTSGGNAGLSLEIHPHMLRHSCGFALANMGIDTRLIRDYLGHRNIRHTVWY 176

Query: 299 T 299
           T
Sbjct: 177 T 177


>gi|257869303|ref|ZP_05648956.1| phage integrase [Enterococcus gallinarum EG2]
 gi|257803467|gb|EEV32289.1| phage integrase [Enterococcus gallinarum EG2]
          Length = 324

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 53/318 (16%), Positives = 118/318 (37%), Gaps = 38/318 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              W +N  +E+ L   T ++Y       L  +  Y + +I    +  +  + ++  ++K
Sbjct: 7   FDYWFENY-VEKKLKYNTQKNY-------LNIINKYIKPEIGKYYLSSIGPSRLQDLMNK 58

Query: 78  R---RTQKIGDRSLKRSLSGIK-SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
                 + +   S++  L+ +K +F + +   +    + ++ +      N   +  ++ +
Sbjct: 59  LPNGFDRPLAKHSVEIVLTVLKGAFKRAVYPWQAINSNPMVYVEMPAFENKPKQTRDDMK 118

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG- 192
            +T+     +    E     +     L + +  GLR  E   L   +I  D+ T+ +   
Sbjct: 119 IITMDQYQKIL---EFNPPSSPFRLPLMIGFHTGLRRGEVCGLQWSDISLDERTITVDRI 175

Query: 193 -------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK--- 236
                        K         +  V  A L        +  L      +         
Sbjct: 176 MLQDKHGIQLGTPKTQASFRTIAIDDVLAAELRRARKSQSENKLRYGKFYYDSTFVCTKD 235

Query: 237 ---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
              P+ P   + +  ++++ LG+  +   H+LRH+ AT LL +G   + +Q  LGH R++
Sbjct: 236 NGEPVTPNSIKWHSSRIKKELGIDFN--FHSLRHTHATMLLEDGVKPKIVQERLGHSRIA 293

Query: 294 T-TQIYTNVNSKNGGDWM 310
           T    Y +V  K   + +
Sbjct: 294 TKMDKYVHVTRKMKTEAV 311


>gi|323340466|ref|ZP_08080721.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644]
 gi|323092010|gb|EFZ34627.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644]
          Length = 372

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 58/303 (19%), Positives = 108/303 (35%), Gaps = 24/303 (7%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           S    +    W +  + E  +S +T   Y     +   F             I +++  +
Sbjct: 59  SVSFAQYFDEWFRTYK-ENKISYITAGKYRVIQSKLAEFYGSRK--------IDEITRRD 109

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-- 128
            + FI++         S+K++ S I+S +K      + T+    N+  +  S+   +   
Sbjct: 110 YQRFINEYGACH-APESVKKTNSIIRSCVKSAILDDLITKDFTQNVELVWNSDREHKVDY 168

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           LN  +   L   +               +AI+      G+R+ E  +LT  +I  +  T+
Sbjct: 169 LNVNEINKLAAYLESKLDPRYTSYYMIYTAIM-----TGMRLQEIAALTWDDINFNWKTI 223

Query: 189 RIQGKGDKIRIVPLLPSVRKA-----ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
            I    D +    +      +     +          L  N    +F    G        
Sbjct: 224 DINKAWDFVLKKYIPTKTESSTRIIRVNSKLLDIIAQLKSNHSGMVFCNASGTIPTSAGC 283

Query: 244 QRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRL-STTQIYTNV 301
            + +R+  R LG+   +   H LRHS    LL  G D+ +I   LGH  L +TT+ Y  +
Sbjct: 284 NKTLRKSLRQLGINKPSYHFHALRHSHVALLLYKGVDIYAISKRLGHSDLTTTTRRYAYL 343

Query: 302 NSK 304
             +
Sbjct: 344 IDE 346


>gi|301166079|emb|CBW25653.1| putative integrase/recombinase [Bacteriovorax marinus SJ]
          Length = 366

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 63/264 (23%), Positives = 109/264 (41%), Gaps = 35/264 (13%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           ++   + I  +SY ++   I+   + K         L  IK         +    +    
Sbjct: 92  KQWDDRPIETISYNDVLGLITTLESNKHE------VLKYIKQVFNLQVDMRTIPSNPASK 145

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +   KK++   +A+   +   L+  +        K +D    +I Y+ Y  GLR  EAL 
Sbjct: 146 ITFPKKTDRKLQAMTVGEITKLLTYM--------KEVDHSWFSIFYVTYQFGLRHGEALG 197

Query: 176 LTPQNIMDDQSTLRIQG------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
           +   +I  +++ L IQ             K    R VP+   VR+ +L+ Y     D   
Sbjct: 198 IKFSDIDWERNHLFIQRAWKKKEKIWGPPKNGTSRFVPMNSQVREYLLKLYKGKHEDE-- 255

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                 F   R K    G     +++++R++G+ L T  H+LR SF THLL  G D+ S+
Sbjct: 256 ------FILPRIKKWEGGKGAEVLKEIQRHIGIKL-TNYHSLRASFITHLLRKGQDIISV 308

Query: 284 QSILGHFRLSTTQIYTNVNSKNGG 307
           Q ++GH  L TT  Y  ++  +  
Sbjct: 309 QEMVGHKELKTTMGYIRLDGSDLQ 332


>gi|289645098|ref|ZP_06477125.1| integrase family protein [Frankia symbiont of Datisca glomerata]
 gi|289505095|gb|EFD26167.1| integrase family protein [Frankia symbiont of Datisca glomerata]
          Length = 267

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 43/251 (17%), Positives = 81/251 (32%), Gaps = 13/251 (5%)

Query: 56  EKITIQTIRQLSYTEIRAFISK-------RRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT 108
                +    ++   +  F+         RR +        +    ++ +  +L   +  
Sbjct: 2   RDAAPEDAAGITRAHVEQFLIDFRTLPSPRRPEGRSAAYANQVYRALQQWFGWLLAEEEI 61

Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
             S +  M       +    L + Q   L+      T    ++I+ R++AI+  L   G 
Sbjct: 62  DRSPLERMSPPVVPETPVPVLEDDQIRALL-----ATCAGKEFIERRDNAIIRSLMDSGG 116

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
           R SE   L   ++      L + GKG + R  P+  +   A+  Y           +   
Sbjct: 117 RRSEVGKLEVPDVDLTAKVLHVLGKGRRPRDAPIGNNTALALGRYLRARARQPGAKLPAL 176

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
                  + L      R + +  + +GLP     H  RH+ A   L  GG    +  I+G
Sbjct: 177 WLSSDGRRVLTSDGMARMLSRRGKRIGLP-HLHPHQFRHTLADDWLEAGGTEGDLMRIMG 235

Query: 289 HFRLSTTQIYT 299
                    Y 
Sbjct: 236 WRSRQMVDRYA 246


>gi|168185960|ref|ZP_02620595.1| phage integrase [Clostridium botulinum C str. Eklund]
 gi|169296151|gb|EDS78284.1| phage integrase [Clostridium botulinum C str. Eklund]
          Length = 366

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 119/318 (37%), Gaps = 41/318 (12%)

Query: 18  RQNWLQNLEIE----RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
            + +++   +E       S  T + Y+   +  + ++  +   K+    I++  Y ++  
Sbjct: 64  VKEYIEY-WLETYPKNNCSPSTYKRYKFFIKDIINYIGKHKLSKLNPMIIQKF-YEDL-- 119

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
                  + I + ++ ++   +   LK+ ++ ++   +    +   K +    +     +
Sbjct: 120 ----LSDRNISNNTVIKTHRMLHLALKHAQQWQLINNNPCDLVTPPKATKQEMKYWQPDE 175

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--- 190
               +D +     +            ++L    G R+ E  ++   ++     T+RI   
Sbjct: 176 INIYLDILKEEFLYPA----------IFLAIQTGCRVGELCAIKWSDVDLIDKTIRIDKT 225

Query: 191 ------------QGKGDKIRIVPLLPSVRKAILEYYDLCPFD-LNLNIQL-PLFRGIRGK 236
                           + IR + LL +    +           L   I+L  +     G+
Sbjct: 226 LQRIDCKLALKYPKTQNSIRTITLLETAITFLKNLKKNRIEKKLKYGIELDYVLCWEDGR 285

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TT 295
           P++P    ++  +L     LP     H LRHS AT LL  G + + I   LGH  ++ T 
Sbjct: 286 PIDPHYISQHFPKLLDKYNLPK-IRFHDLRHSHATLLLKAGVNAKIISKRLGHSTVAFTL 344

Query: 296 QIYTNVNSKNGGDWMMEI 313
             Y++V++K   + M ++
Sbjct: 345 DTYSHVSTKMQKEEMSKV 362


>gi|54027895|ref|YP_122135.1| putative recombinase [Nocardia farcinica IFM 10152]
 gi|54019403|dbj|BAD60771.1| putative recombinase [Nocardia farcinica IFM 10152]
          Length = 358

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 95/277 (34%), Gaps = 38/277 (13%)

Query: 81  QKIGDRSLKRSLSGIKSFLKY---------LKKRKITTESNILNMRNLKKSN----SLPR 127
           +++   +       + S+ ++          +      E  I  +   + S      +P 
Sbjct: 81  RRVSSSTRAARARTVVSYFEFLEIRYKVVLHEMTGRVVECPIDEVNRPRMSVDTMVRIPP 140

Query: 128 ALNEKQALTLVDNVLLHTSHETKW-IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
              E +   L            K+   ARN  +  L    GLR++EA  L   +I  +  
Sbjct: 141 --TEAELEQLFTGWREDLVTCRKFAPSARNYMVARLAADVGLRVNEACMLDLDDIRWELG 198

Query: 187 T---LRIQGKGD------KIRIVPLLPSVRKAILEYYDLCPFDLNLN---IQLPLFRGIR 234
               L ++          + R+VPL+     A+  + +      + +    + PLF   R
Sbjct: 199 RFGKLNVRHGKGAFRSGPRQRLVPLINGADTALTWFVEDVWAQFDADETLPRAPLFPSER 258

Query: 235 GK------PLNPGVFQRYIRQLRRYLGLPL---STTAHTLRHSFATHLLSNGGDLRSIQS 285
            +       +   V +R +        LP      T H LRH  A+ L   G D+ +IQ 
Sbjct: 259 RRAGSSGTRVTRDVIRRALGGAVDR-HLPTWSGRLTPHVLRHYCASQLYRTGVDILAIQE 317

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           +LGH  ++TT  Y +       D +   + +      
Sbjct: 318 LLGHSWITTTMRYVHPYGTRVEDAVTAGHKRAAARWE 354


>gi|293382367|ref|ZP_06628306.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis R712]
 gi|293389371|ref|ZP_06633829.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis S613]
 gi|312907391|ref|ZP_07766382.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|312910009|ref|ZP_07768856.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|291080312|gb|EFE17676.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis R712]
 gi|291081258|gb|EFE18221.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis S613]
 gi|310626419|gb|EFQ09702.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|311289282|gb|EFQ67838.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|315577567|gb|EFU89758.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0630]
          Length = 408

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 53/318 (16%), Positives = 104/318 (32%), Gaps = 46/318 (14%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR--------RTQKIGDRSLKR 90
           Y    R ++          I    + +    + + FI+              +   ++K 
Sbjct: 94  YRDAIRMYIDPY-------IGNYQLNKYKPADHQKFINSLFTNKELGKNKNGLSYNTVKI 146

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
             + + +  K  +K      +    +              +K     ++   L       
Sbjct: 147 VNAALSNAFKKAQKLGFVKSNPTYLVEFPLDKVKEKTNKEKKLEFYTLEQENLFLDTARN 206

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-----RIQGKGDK--------- 196
           + +        +++  GLR  E ++L   N     + L     R+  K            
Sbjct: 207 FDEYMWYVFFLIIFDLGLRKGEVMALRWFNFDFRDNILTFDKQRLYRKERPGQVILDDVK 266

Query: 197 ----IRIVPLLPSVRKAILEYYDLCP------FDLNLNIQLPLFRGIRGK----PLNPGV 242
                R + +   VR ++LE Y +          +  + Q  LF   RGK    P+    
Sbjct: 267 TDAGKRSLKMTNRVRNSVLELYGINYDLTSNVLPMTNSNQDFLFINHRGKNVGLPIRQRS 326

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                 ++ +   LP     H  RH+ A  L   G  L  I+ +LGH  + TT+IY +V+
Sbjct: 327 VDTAWHRIIQKANLPK-IRIHDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVS 385

Query: 303 SKNGGDWM--MEIYDQTH 318
           ++     +  +E+Y   H
Sbjct: 386 AEVKERAVNKLELYQMQH 403


>gi|256841231|ref|ZP_05546738.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737074|gb|EEU50401.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 354

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 61/310 (19%), Positives = 120/310 (38%), Gaps = 38/310 (12%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           F+  K + ++L++    + L K   +          +    +   K T + I      + 
Sbjct: 69  FDKYKLKADFLEHYR--KQLRKHDQKW-----EFVYLHFNNFVHGKCTFEEIDIDLCNKF 121

Query: 72  RAFISK----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
           R ++      RR  +I   S     S  + FLK L +  +   +    +  ++  + +  
Sbjct: 122 REYLLTAKKLRRKGRITRNSASGYWSTFRGFLKILYRNGMIKTNVNDFLDKIETEDVVKE 181

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD---- 183
            L+  +   L +          K    + +++   +    LRIS+ L+L  ++I+D    
Sbjct: 182 YLSVDELYKLAET-------PCKKPILKIASLFSCM--TSLRISDILALCWEDIVDYSAG 232

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
            +    I  K     I+P+       I           +   +  +F+G     L     
Sbjct: 233 GKCVHIITQKNKAEDIIPISEEALGLI---------GYSSEKKGLVFKG-----LMRSWT 278

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           Q  +++  R  G+  + T H+ R +FAT   + G D+R+IQSI+ H  ++TTQ Y  V  
Sbjct: 279 QIPMKEWIRSAGITKNITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVD 338

Query: 304 KNGGDWMMEI 313
            N  +   +I
Sbjct: 339 ANKREASKKI 348


>gi|218129591|ref|ZP_03458395.1| hypothetical protein BACEGG_01168 [Bacteroides eggerthii DSM 20697]
 gi|217988321|gb|EEC54644.1| hypothetical protein BACEGG_01168 [Bacteroides eggerthii DSM 20697]
          Length = 407

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 58/315 (18%), Positives = 114/315 (36%), Gaps = 37/315 (11%)

Query: 14  LLKERQNWLQNLE------IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           LL   + ++++ E       E+G    T QSY         F+      K++      L+
Sbjct: 109 LLGYFRTFIEHFEKRVGVNREKG----TAQSYRYACNCVAAFIQEKY--KLSDVPFTALN 162

Query: 68  YTEIRAFISKRRTQKI-GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
            + I  +    RT++     ++   ++ + + +       I T          +      
Sbjct: 163 RSFIDNYDLYLRTERRFALGTIVLLVTRLNTIVGEAIAEGIITADPFAGYEA-EHPEREQ 221

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQ 185
           + L   +   L+   L    H+ K    R+  +       G+   +   LT ++  + + 
Sbjct: 222 KYLTAAELQRLMTTPL----HDPKLYHIRDLFLFSC--YTGIPYGDMCRLTTEDLEVAED 275

Query: 186 STLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
             + I   + K      VPLL      + +Y D+ P             G      +   
Sbjct: 276 GEVWIKTARKKTKIDYEVPLLDIPLLILDKYRDMAPE------------GKLLPMYSNNE 323

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             R ++++    G+      H  RH++AT + LS+G  L ++  +LGH R+STTQIY  V
Sbjct: 324 LNRTLKRIAAICGIERKLVFHCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYAKV 383

Query: 302 NSKNGGDWMMEIYDQ 316
                      + ++
Sbjct: 384 TDDKIDMDTRSLEEK 398


>gi|222530499|ref|YP_002574381.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222457346|gb|ACM61608.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 373

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 60/329 (18%), Positives = 114/329 (34%), Gaps = 44/329 (13%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
            N L E  +F  L +   WL  +   R +S  T QSY           A + +  +    
Sbjct: 54  KNKLLEQKTFGELLDL--WLNTVAKNR-VSLSTFQSYSSSI-------ALHIKPFLGDVE 103

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSL-SGIKSFLKYLKKRKITTESNILNMRNLKK 121
           + +L+  +++ +      +K    +L       I   L Y  +  +  ++    +   +K
Sbjct: 104 LNKLTAMDLQKYYQHITGEKGLSSTLALYHHRIIHQALDYAVRMNMIEKNPADYVDPPRK 163

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
            +  P   +E      +D           + +      + L    G+RI E  +L   +I
Sbjct: 164 RSYQPSIWDEDTIKRALDI----------FRNTNIWVPVLLAIYTGMRIGEITALKWDDI 213

Query: 182 MDDQSTLRIQGK----------------GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
             +Q  + +                       RIV +  +V + + ++            
Sbjct: 214 NLEQGYIVVSKTLMKINRQLYIKEKGENKSSYRIVAISSNVIEELKQWRRKQEQYKEKLK 273

Query: 226 QLPLFRGIRGKP-----LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
           +L    G           +P    +  ++     GLP     H LRH+ A+ LL +G D 
Sbjct: 274 ELYHNEGFVCTFEDGRVQDPKYITKVFQKTIEKHGLPK-IRFHDLRHTHASLLLKHGVDP 332

Query: 281 RSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
           + I   LGH  ++TT  IY++V  +    
Sbjct: 333 KHISDRLGHSTITTTLNIYSHVFDEKRRK 361


>gi|189460321|ref|ZP_03009106.1| hypothetical protein BACCOP_00958 [Bacteroides coprocola DSM 17136]
 gi|189433019|gb|EDV02004.1| hypothetical protein BACCOP_00958 [Bacteroides coprocola DSM 17136]
 gi|291515194|emb|CBK64404.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 407

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 58/315 (18%), Positives = 114/315 (36%), Gaps = 37/315 (11%)

Query: 14  LLKERQNWLQNLE------IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           LL   + ++++ E       E+G    T QSY         F+      K++      L+
Sbjct: 109 LLGYFRTFIEHFEKRVGVNREKG----TAQSYRYACNCVAAFIQEKY--KLSDVPFTALN 162

Query: 68  YTEIRAFISKRRTQKI-GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
            + I  +    RT++     ++   ++ + + +       I T          +      
Sbjct: 163 RSFIDNYDLYLRTERRFALGTIVLLVTRLNTIVGEAIAEGIITADPFAGYEA-EHPEREQ 221

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQ 185
           + L   +   L+   L    H+ K    R+  +       G+   +   LT ++  + + 
Sbjct: 222 KYLTAVELQRLMTTPL----HDPKLYHIRDLFLFSC--YTGIPYGDMCRLTTEDLEVAED 275

Query: 186 STLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
             + I   + K      VPLL      + +Y D+ P             G      +   
Sbjct: 276 GEVWIKTARKKTKIDYEVPLLDIPLLILDKYRDMAPE------------GKLLPMYSNNE 323

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             R ++++    G+      H  RH++AT + LS+G  L ++  +LGH R+STTQIY  V
Sbjct: 324 LNRTLKRIAAICGIERKLVFHCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYAKV 383

Query: 302 NSKNGGDWMMEIYDQ 316
                      + ++
Sbjct: 384 TDDKIDMDTRSLEEK 398


>gi|309775375|ref|ZP_07670379.1| transposase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916851|gb|EFP62587.1| transposase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 396

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 105/298 (35%), Gaps = 38/298 (12%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           RQ+L  +     + + ++ I  +  ++ + +  +   +    +++      +K+      
Sbjct: 107 RQYL--MNALKNDPLGMRAIDTVKQSDAKEWAIRMSEKGYAYKTIDNYKRSLKASFYMAI 164

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           +     ++        K S+ L     +K  LT      L    E   I ++    + LL
Sbjct: 165 QDDCIRKNPFE----FKLSDVLEDDTEQKVILTPEQEERLLAFMEKDKIYSKYYDEVVLL 220

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVR 207
              GLRISE   LT  +I      L I                    +  R +PL     
Sbjct: 221 LETGLRISEFCGLTT-HIDMQNRILNIDHQLLKDSEIGYYIETPKTKNGKRELPLTERAY 279

Query: 208 KAILEYYDLC---PFDLNLNIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGL 256
           +AI             +       LF    G P        +  G+ ++Y +     L  
Sbjct: 280 QAIQRILKSRGKAQPLIVGGYSNFLFLNREGLPKVAGNYEGMVRGLIKKYNKYHTDKL-- 337

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
             + T H+ RH++ T++ + G +  ++Q ++GH  ++ T   Y +   ++    +  +
Sbjct: 338 -PNITPHSFRHTYCTNMANRGMNPNTLQYLMGHANITMTLGYYAHGTFQSAKAELERL 394


>gi|332976138|gb|EGK13006.1| phage integrase family site-specific recombinase [Desmospora sp.
           8437]
          Length = 375

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 51/271 (18%), Positives = 95/271 (35%), Gaps = 32/271 (11%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           + +++   I+ F SK+  +      ++   S +   L    + +I +++ +  +   K S
Sbjct: 105 LSEVTPVRIQKFYSKKLEEGFSGDYVRYMHSILHKSLTQAVRWQILSKNPVELVSPPKPS 164

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
                    ++A   +          T   D        L    G+R  E L L  ++  
Sbjct: 165 GKEKPTWTIEEANRFL----------TCVEDQHYYLPYLLAIHTGMRQGEILGLRWKDCD 214

Query: 183 DDQSTLRIQ---------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDL-----N 222
            DQ  +RIQ                     R++ L   V  A+ ++              
Sbjct: 215 LDQGLIRIQQTLGRTRKGLMFQEPKTKGSKRVITLTSQVISALKKHKAKQNQQKLLLGNG 274

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
              Q  +   + GKP++P    R   ++     +P     H LRH+ A+ +L  G   + 
Sbjct: 275 YQDQDLVNCTLEGKPIHPRNLIRNFHRMMEKAEVPK-IRFHDLRHTHASIMLQLGEHPKI 333

Query: 283 IQSILGHFRLSTT-QIYTNVNSKNGGDWMME 312
           +   LGH R S T  IY++V      D   +
Sbjct: 334 VSERLGHSRTSITLDIYSHVTPNLQVDAAKK 364


>gi|320139614|gb|EFW31483.1| site-specific recombinase, phage integrase family [Staphylococcus
           aureus subsp. aureus MRSA131]
          Length = 345

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 113/278 (40%), Gaps = 18/278 (6%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           + T + Y    +          + KI    + +++    + FI+    +   + +++++ 
Sbjct: 74  ENTYRHYRNALQH-------IQKHKIGKMELSKINRQVYQKFINDYSKEHAKE-TIRKTN 125

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           S I+S L       +  ++    + N K         +E++    V    +   H  K  
Sbjct: 126 SAIRSALDDALYDGLIFKNPAYKV-NYKAGKP---TKSEQEKFISVTEYEILKDHVRKKR 181

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
              + A+  ++   G R+S A ++  ++I   ++T+ I  +        +  S+ K+ ++
Sbjct: 182 TRSSLALF-IMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYI--SIAKSDMK 238

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +         ++    +F+      +N       ++   R   +P+  T+H LRH+  ++
Sbjct: 239 HIMDVISTFAISYDGYIFKEAGSI-INLHAINNALKSACRVNNIPI-ITSHALRHTHCSY 296

Query: 273 LLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDW 309
           LL+ G  +  I   LGH  ++ TT +Y+++  +   + 
Sbjct: 297 LLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEE 334


>gi|145300732|ref|YP_001143573.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853504|gb|ABO91825.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 353

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 104/279 (37%), Gaps = 46/279 (16%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT---------QKIGDRSLKRSLSG 94
           R  L++L    +  I      + +     A+  +R           +K+   ++ R    
Sbjct: 88  RDKLVWLCEALDNPIA----TEFTSEHFSAYRERRLAGELYVPGQCKKVTPTTINREQLY 143

Query: 95  IKSFLKYLKKRKITTE-SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
           +++    L +  +    + + ++R  K   S    L++ +   L+D              
Sbjct: 144 LQAVFNELARLGVWNGGNPLSDLRQYKVQESELAYLSQDEIEQLLDAGKEQRDL------ 197

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
                ++ L    G R SE   ++   +   + T   + KG + R VP+ P +   +   
Sbjct: 198 ---WLVVMLCLSTGARWSEIEKVSRSQVGMGRITFT-KTKGKRNRTVPVAPWLLAML--- 250

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATH 272
                               R   L    +  + + +RR  + LP+  + H LRH+FA+H
Sbjct: 251 ------------------PKRTGRLFDDCYAEFEKAIRRANIKLPVGQSTHVLRHTFASH 292

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            + NGG++  +Q ILGH  +  T  Y++    +  D + 
Sbjct: 293 FMMNGGNILVLQRILGHTDIKMTMRYSHFAPDHLEDAVR 331


>gi|323692934|ref|ZP_08107156.1| site-specific recombinase [Clostridium symbiosum WAL-14673]
 gi|323503017|gb|EGB18857.1| site-specific recombinase [Clostridium symbiosum WAL-14673]
          Length = 306

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 51/317 (16%), Positives = 108/317 (34%), Gaps = 43/317 (13%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + +   LE + G S   L SY C    F+                 +L+   ++ +   
Sbjct: 9   VEQFKIYLEKQ-GRSAKNLTSYACSVSMFISLCG-------------ELTVENLKRYREY 54

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES---NILNMRNLKKSNSL-PRALNEKQ 133
              +     ++   + G+  +L YL++      S         + ++   L P  +    
Sbjct: 55  LL-KNYQLNTVNTRIYGMNRYLDYLQESGRLPASLTLPSGGPPDWQEPIHLNPVKITRDG 113

Query: 134 ALTLVDNVLLHTSHETKWIDARNS----------------AILYLLYGCGLRISEALSLT 177
              +        S+    I  R+                  ++  L   G R+SE L + 
Sbjct: 114 VYRMQPVKEQKKSYLDTVISQRDYERMKRRLKQDGNMYWYFVIRFLGATGARVSELLQIK 173

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
            +++      L +  KG KIR +    S+    + ++              +F    G  
Sbjct: 174 IEDLRL--GYLELYTKGGKIRRLYFPRSLCAEAIPWFMER-----GTRSGFIFLNQHGNL 226

Query: 238 LNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
           ++    +  ++   +   + P +   H+ RH FA + L    D+  +  ++GH  + TT+
Sbjct: 227 ISSRGIELRLKHFAKLYKINPKTVYPHSFRHRFAKNFLKRFNDISLLADLMGHDSIETTR 286

Query: 297 IYTNVNSKNGGDWMMEI 313
           IY   +S+     +  I
Sbjct: 287 IYLTRSSQEQKALLDRI 303


>gi|255029664|ref|ZP_05301615.1| integrase [Listeria monocytogenes LO28]
          Length = 370

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 109/292 (37%), Gaps = 37/292 (12%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T+  Y+    QF+ +     +       +  +   + + FI+          ++   
Sbjct: 62  SQSTINLYDLAYNQFVDYFGEKRK-------LNSIDAVQYQQFINHLSVD-YAISTVDTR 113

Query: 92  LSGIKSFLKYLKKRKITTESNIL--NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
              I++            ++  +  ++     + +  + +   +   L++        E 
Sbjct: 114 HRKIRAIFNKAVHLGYMKKNPAIGAHISGHDVAKTKAQFMETDKVHLLLE--------EL 165

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-------------KGDK 196
               + + A+++L    G+R  E ++LT ++I   + ++ +               K  K
Sbjct: 166 ANFHSISRAVIFLAVQTGMRFEEIIALTKKDINFAKRSITVNKAWDYKYTNTFIDTKTKK 225

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
            R++ +  S  + +  Y       +      N  + LF     KP++     + ++++  
Sbjct: 226 SRVIYIDNSTVQYLQSYLTWHTDYMKEHDIQNPLMLLFITYHNKPIDNASCNKALKKICN 285

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
            +      T H LRH+     +  G D+  +   LGH  ++TT + Y++++S
Sbjct: 286 TIN-SEPVTLHKLRHTHTGLCVEAGMDIIYVADRLGHDDINTTLKYYSHLSS 336


>gi|154485138|ref|ZP_02027586.1| hypothetical protein EUBVEN_02862 [Eubacterium ventriosum ATCC
           27560]
 gi|149734091|gb|EDM50210.1| hypothetical protein EUBVEN_02862 [Eubacterium ventriosum ATCC
           27560]
          Length = 432

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 64/359 (17%), Positives = 122/359 (33%), Gaps = 80/359 (22%)

Query: 22  LQNLEIER-----GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           L +L +E       LS  T+ SY+    +         +  I  + ++ ++   ++A+I 
Sbjct: 68  LLDLWVEEELKPGNLSNGTVMSYQGTVNR-------IKQHPIGNRKLKTVTADHLQAYID 120

Query: 77  KRRTQKIGDR-SLKRSLS--GIKSF-------LKYLKK-RKITTESNILNM--RNLKKSN 123
                      +  ++LS   ++ F        ++    +++ T + +  +  R  K+  
Sbjct: 121 FLSFGGTNPDGTTAKALSKGYLRLFSAVLQGAFRFAVFPKRLITFNPMQYVVWRGKKEEY 180

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL--YLLYGCGLRISEALSLTPQNI 181
            L    + + A T   +   +   E       N A+L   + Y  GLRI E   LT Q+I
Sbjct: 181 ELFSDEDGETASTPTLSYEQYQRLEDFLKKKNNPALLPIQIAYYTGLRIGEVCGLTWQDI 240

Query: 182 MDDQSTLRIQG----------------KGDKIRIVPLLPSVRKAILE------------- 212
             ++  L ++                 K  KIR V    ++   +               
Sbjct: 241 NLEEQYLTVRRSMRYNGARHKTEIGATKRKKIRTVDFCDTLAAILKSAKTEQHKNRFRYG 300

Query: 213 ---------------------YYDLCPFDLNLNIQLPLFRGIRGKPLN--PGVFQRYIRQ 249
                                Y      ++    +   F  +R       P       R 
Sbjct: 301 ELYSLNYYLEVKEKDRTYYEVYSLPRSEEVPEGYKELSFVCLRPDGAFEAPSTVGIMCRT 360

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGG 307
            R+ +        H LRH++ ++LLSNG   + +Q +LGH  +STT  IY +   +   
Sbjct: 361 ARKKVEGLEDFHFHMLRHTYTSNLLSNGAAPKDVQELLGHADVSTTMNIYAHATREAKR 419


>gi|282881427|ref|ZP_06290103.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281304725|gb|EFA96809.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
          Length = 378

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 93/275 (33%), Gaps = 42/275 (15%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           T  +     I  FI     + + + ++ + L  ++ FL++  ++     ++       K 
Sbjct: 119 TFDKFDEDGIANFIDYLGKKGMKNSTINKQLGFLRWFLRWCYEKGY-HTNHTFEYYKPKL 177

Query: 122 SNSLPRA--LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
            N+  R   L  ++  TL          +   +       L+  Y  GLR S+A +LT  
Sbjct: 178 KNTTKRVVFLTAEELNTL---ETFQIPDKYVALGPVRDVFLFTCY-TGLRYSDACNLTWD 233

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL- 238
           +I      + I       R++  + S  +AIL+ Y               F  ++  P+ 
Sbjct: 234 DIH--NGKIEIVTVKTSDRLLIEINSKAQAILDKYTEIH-----------FPNMKVLPVV 280

Query: 239 NPGVFQRYIRQLRRYLGLPLSTT---------------------AHTLRHSFATHLLSNG 277
           +     +++  L +  G+  S                        H  R +F    L+ G
Sbjct: 281 SNQKMNKHLHTLCKLAGIDESIKSTHYEGNKRVDEVHPKYELIGTHCGRRTFICTALAKG 340

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                +    GH      + Y ++  +   ++M +
Sbjct: 341 IPPSVVMKWTGHSDYKAMKPYIDIADEVKSEYMKQ 375


>gi|226948086|ref|YP_002803177.1| phage integrase [Clostridium botulinum A2 str. Kyoto]
 gi|226844485|gb|ACO87151.1| phage integrase [Clostridium botulinum A2 str. Kyoto]
          Length = 138

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 41/127 (32%), Positives = 68/127 (53%), Gaps = 4/127 (3%)

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
           S + + GKG+K R + L P+ +KAI ++  +    +N+N    LF       +   V Q 
Sbjct: 4   SFIYVVGKGNKKREIFLTPAAKKAINDWLHIRN-SINVNTN-ALFISRNSNRITTRVIQN 61

Query: 246 YIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTNVNS 303
            +++     GL P S + H LRH+ AT +   G  D+RS+Q ILGH  ++TT+IYT+++ 
Sbjct: 62  IVKKYVITSGLDPKSISTHKLRHTAATLMYKYGRVDIRSLQQILGHESVATTEIYTHIDE 121

Query: 304 KNGGDWM 310
                 +
Sbjct: 122 HQLQSAV 128


>gi|330822390|ref|YP_004362611.1| Phage integrase family protein [Burkholderia gladioli BSR3]
 gi|327374227|gb|AEA65581.1| Phage integrase family protein [Burkholderia gladioli BSR3]
          Length = 770

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 58/350 (16%), Positives = 118/350 (33%), Gaps = 63/350 (18%)

Query: 29  RGL-SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE-IRAFISKRR------- 79
           RG  S  T ++Y  +  + L++      + ++  ++  L   E +  F++  +       
Sbjct: 306 RGARSAQTQRAYRREAERLLLWAIVAKGKPLS--SLNTLDVAEYLEQFLANPQPAERWIG 363

Query: 80  --------------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN--LKKSN 123
                            +  RS   +   + +   +L +++    +    +        +
Sbjct: 364 RGGVERFDPAWRPFAGPLSARSRDTARRILTAMGAWLVRQQYLRVNPFEGLAAAAPVPID 423

Query: 124 SLPRALNEKQALTLV------------DNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
           +  R L   Q   ++            +      +   +    R++ +L L Y  G+R +
Sbjct: 424 TAGRTLTHAQWRYVLQTVWQPEPVLGAEPDRSDAARADRIRRQRDAFVLLLAYATGMRRA 483

Query: 172 EALSLTPQN--------IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
           E  + T  +         ++D   LR+ GKG + R VP+   +   +          L+L
Sbjct: 484 ELAAATTGDLSRKALDGALEDAYVLRVDGKGRRRREVPMPARLMDLLRAELRARAEPLSL 543

Query: 224 N----------------IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                               P   G   K +     +R               + H LRH
Sbjct: 544 ETAPADTPLVAHLVTGAALHPNTIGALFKGIFARAAERLAPSYPGAAADLQRASTHWLRH 603

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           +FA H L  G D+R +QS+LGH  L+TT  Y   ++      +   ++  
Sbjct: 604 TFANHGLDAGADIRDMQSLLGHASLATTTHYAKGDAARQYQTVDAFFNAA 653


>gi|268589662|ref|ZP_06123883.1| site-specific recombinase, phage integrase family [Providencia
           rettgeri DSM 1131]
 gi|291314972|gb|EFE55425.1| site-specific recombinase, phage integrase family [Providencia
           rettgeri DSM 1131]
          Length = 328

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 94/246 (38%), Gaps = 31/246 (12%)

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNILNMRNLKKSNS 124
           L+  ++  +   R    I   ++ R  S I      LK+  +   +  I  +  LK+  +
Sbjct: 101 LTDKQLALYRELRLAAGIKPSTINRDFSAISGIFTALKRTDLFMGKHPIRGLSRLKQKAT 160

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
               L  ++   L++            +   N  +  L    G R  EA+ L  ++++ +
Sbjct: 161 EMSYLTHEEIGLLLNI-----------LKGDNKKVAILCLSTGARWGEAVKLKREHVIQN 209

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           +       K  K RIVP+   V   +                  LF        +  +F+
Sbjct: 210 KIRFTF-TKTGKARIVPISQEVADKVC-----------TRKSGLLFPNT-----SYDMFR 252

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           ++I+ +     +P     H LRH+FATH + NGG + ++Q ILGH  L  T  Y +    
Sbjct: 253 KHIKTI--KPDMPQGQATHALRHTFATHFMMNGGSIITLQRILGHSTLQQTLTYAHFAPD 310

Query: 305 NGGDWM 310
              D +
Sbjct: 311 FLQDAI 316


>gi|89147522|gb|ABD62621.1| integrase [uncultured bacterium]
          Length = 163

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 38/111 (34%), Positives = 53/111 (47%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           QG G       L      A+ E+     F        P    +R   ++    QR ++  
Sbjct: 52  QGFGADYLWPALERKYPSAVREWIWQYVFPSGRLSVDPRSGKVRRHHIHENALQRAVKDA 111

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              +GL    + H LRHSFATHLL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 112 SVQVGLTKQMSCHVLRHSFATHLLEGGYDIRTVQELLGHADVSTTMIYTHV 162


>gi|288920638|ref|ZP_06414942.1| integrase family protein [Frankia sp. EUN1f]
 gi|288347978|gb|EFC82251.1| integrase family protein [Frankia sp. EUN1f]
          Length = 376

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 60/332 (18%), Positives = 109/332 (32%), Gaps = 49/332 (14%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIG 84
           ++ R LS  T+       R F      +                 +  ++S  R  +   
Sbjct: 42  QLARNLSVSTVDKRLGVVRMFTAHADAFPW---------VWRPQMLDEWLSDLRAVRGRS 92

Query: 85  DRSLKRSLSGIKSFLKY-----------------LKKRKITTESNILNMRNLKKSNSLPR 127
             +++     + +F +Y                     +I  E N        +++   R
Sbjct: 93  RSTIRNYSLAVSAFCRYLLDPAYGWPARCEHQFGSHPVQICHEWNTAVHVQDTEADPSRR 152

Query: 128 ALNEKQALTLVDNVLLHTSH-----ETKWIDAR-NSAILYLLYGCGLRISEALSLTPQNI 181
           A    +  TL D      +H        W+    ++ +  + Y  GLR  E + L   + 
Sbjct: 153 AFTLTELQTLFDYADDQVAHARAAGRKGWLSLFRDATLFKVAYSYGLRRREVVMLDLTDF 212

Query: 182 MDDQ--------STLRIQGKG-------DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
             +            R++              ++ + P     + ++ D     +     
Sbjct: 213 ATNPHAAEFGTFGVCRVRFGKAMKGSAPKPRSVLTVWPWTPDILTQWVDELRPLMPTAAD 272

Query: 227 LP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
            P L+   R   +      R + + R  LGLP     H+LR S+ THL+ +G D   +Q 
Sbjct: 273 SPALWPSERAGRITLSAVNRRLTEYRNALGLPAGLDVHSLRRSYVTHLIEDGWDPLFVQQ 332

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            +GH   STT IYT V+S      +    D T
Sbjct: 333 QVGHEHASTTAIYTCVSSDFRTRTLRSALDAT 364


>gi|255281627|ref|ZP_05346182.1| site-specific recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
 gi|255267694|gb|EET60899.1| site-specific recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
          Length = 413

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 57/347 (16%), Positives = 124/347 (35%), Gaps = 63/347 (18%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-R 79
           + + +  +  L K T  +Y+     F+        ++   + I ++ Y+++  F      
Sbjct: 77  FDRYISTKTDLRKTTYTNYKYMYNHFVR-------DEFGKRKIAEIKYSDVLYFYYHLIN 129

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-----RNLKKSNSLPRALNEKQA 134
            +K+   +L+   + +    +   +  I   +    +     +   +++ +  AL  +Q 
Sbjct: 130 EKKLQINTLETIHTVLHPTFQLAVRDDIIRTNPSDGVMAQIKKKPGRNHGVRHALTVEQQ 189

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-- 192
              ++            I    + +  +L G G RI E + L  Q++  +  T+ I    
Sbjct: 190 RAFMNYTA------NNPIFCHWTPLFTVLLGTGGRIGEIIGLRWQDLDFENRTISINHSV 243

Query: 193 ---------------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---- 227
                                    IR +P+L +V  A  E Y++   +   + ++    
Sbjct: 244 VYYAQEGAKTRKSVFQVSLPKTEAGIRTIPMLDAVYDAFKEEYEVQKENGFNSTEIDGMT 303

Query: 228 -PLFRGIRGKPLNPGVFQRYIRQL---------------RRYLGLPLSTTAHTLRHSFAT 271
             +F    G   NP    R I+++               +R   +    + H LRH+F T
Sbjct: 304 GFVFCNRFGNVHNPQTVNRTIKRILESYNAEEVLKAKKEKRQPVILPHFSCHHLRHTFCT 363

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQT 317
                  +++ IQSI+ H  + TT  IY  V      + M  + ++ 
Sbjct: 364 RFCEQETNIKVIQSIMRHANIETTMDIYAEVTDMKKVESMKHLSEKY 410


>gi|330502131|ref|YP_004379000.1| putative integrase [Pseudomonas mendocina NK-01]
 gi|328916417|gb|AEB57248.1| putative integrase [Pseudomonas mendocina NK-01]
          Length = 312

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 90/236 (38%), Gaps = 28/236 (11%)

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALT 136
           R  +    ++L   L  +++    L+   +    + +  ++ LK        L  +Q   
Sbjct: 98  RLGEGASPKTLSNELGYLRAVYNELRGLGVLDYANPLALVKPLKVQERELSWLTTEQIAE 157

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGD 195
            ++ +     +    I      I  +    G R SEA  L P         +   G K  
Sbjct: 158 RLEEIRRGCDNPHVEI------IALICLATGARWSEAEKLKPTG--LRNGVITFSGTKNG 209

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K+R VP+   +   I+ ++                 G     +    F+R +   R  + 
Sbjct: 210 KVRSVPITAELEAKIVRHWKQH--------------GQPNSAIT--SFRRAL--ARTTIR 251

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           LP    AH LRH+FA+H + NGG++ ++Q I GH  L+ T  Y ++   +  D + 
Sbjct: 252 LPKGQAAHALRHTFASHFIQNGGNILTLQKIQGHSCLAMTMRYAHLAPDHLQDAVR 307


>gi|257085325|ref|ZP_05579686.1| phage integrase [Enterococcus faecalis Fly1]
 gi|256993355|gb|EEU80657.1| phage integrase [Enterococcus faecalis Fly1]
          Length = 400

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 53/318 (16%), Positives = 103/318 (32%), Gaps = 46/318 (14%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR--------RTQKIGDRSLKR 90
           Y    R ++          I    + +    + + FI+              +   ++K 
Sbjct: 86  YRDAIRMYIDPY-------IGNYQLNKYKPADHQKFINSLFTNKELGKNKNGLSYNTVKI 138

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
             + + +  K  +K      +    +              +K     ++   L       
Sbjct: 139 VNAALSNAFKKAQKLGYVKSNPTYLVEFPLDKVKEKTNKEKKLEFYTLEQENLFLDTARN 198

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-----RIQGKGDK--------- 196
           + +        +++  GLR  E ++L   N       L     R+  K            
Sbjct: 199 FDEYIWYVFFLIIFDLGLRKGEVMALRWFNFDFKDDILTFDKQRLYRKEQPGQVILDDVK 258

Query: 197 ----IRIVPLLPSVRKAILEYYDLCP------FDLNLNIQLPLFRGIRGK----PLNPGV 242
                R + +   VR ++LE Y +          +  + Q  LF   RGK    P+    
Sbjct: 259 TDAGKRSLKMTNRVRNSVLELYSINYDLTSNVLPMTNSNQDFLFINHRGKNVGLPIRQRS 318

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                 ++ +   LP     H  RH+ A  L   G  L  I+ +LGH  + TT+IY +V+
Sbjct: 319 VDTAWHRIIQKANLPK-IRIHDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVS 377

Query: 303 SKNGGDWM--MEIYDQTH 318
           ++     +  +E+Y   H
Sbjct: 378 AEVKERAVNKLELYQMQH 395


>gi|254498878|ref|ZP_05111583.1| putative integrase/recombinase [Legionella drancourtii LLAP12]
 gi|254351863|gb|EET10693.1| putative integrase/recombinase [Legionella drancourtii LLAP12]
          Length = 332

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 56/313 (17%), Positives = 114/313 (36%), Gaps = 25/313 (7%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           +  L +E+  S    +  +   + F  FL   T ++       +L    +  ++ K+  +
Sbjct: 18  MNQLILEKRASGYKYEKLDRILKCFDHFLCHTTIKQ------NELPKELVLQWLEKQPDE 71

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
           +    + +R +  ++   + + +               +     P    + +   ++  V
Sbjct: 72  Q--ASTQQRRIILVRQLARLMIRLGYPAYVPPYRFGAQRSYAFSPYIFTQIEIQKILHAV 129

Query: 142 LLHTSHETKWI-DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRI 199
                  +  +       I  LLYGCG R+SE L+L  +++   Q  + I+ GK  K R+
Sbjct: 130 DQLKPAASSPLRHLIIPEIFRLLYGCGFRLSEVLNLRVRDVDLKQGVITIREGKHGKDRL 189

Query: 200 VPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           VP    + + +  Y +    +           F    G     G      R++    G+P
Sbjct: 190 VPPALDMVERLRVYAESIDTNSLEKRTEDTFFFPSPSGSCWGKGTIYTLFRKMLLQCGIP 249

Query: 258 -----LSTTAHTLRHSFATH----LLSNGGDLRS----IQSILGHFRLSTTQIYTNVNSK 304
                     H LRH+FA H        G DL +    + + LGH   + TQ Y ++ ++
Sbjct: 250 HGGRGKGPRVHDLRHTFAVHRLVQWYEEGCDLNAKLPFLVAYLGHKNFTGTQKYLHLTAE 309

Query: 305 NGGDWMMEIYDQT 317
              +    + +Q 
Sbjct: 310 LFPNLTERMNEQF 322


>gi|126664741|ref|ZP_01735725.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126664866|ref|ZP_01735850.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126666648|ref|ZP_01737626.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126666884|ref|ZP_01737860.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126667019|ref|ZP_01737994.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126667759|ref|ZP_01738727.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126669122|ref|ZP_01740051.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126626418|gb|EAZ97086.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126627862|gb|EAZ98491.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126628425|gb|EAZ99047.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126628600|gb|EAZ99221.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126629036|gb|EAZ99655.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126631067|gb|EBA01681.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126631192|gb|EBA01806.1| phage-related integrase [Marinobacter sp. ELB17]
          Length = 315

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 111/300 (37%), Gaps = 30/300 (10%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           +   + +L      R   +LT+ +     + F  F    + E      +           
Sbjct: 8   MARVEAYLAYRR--RNGFELTIDA--TQLQSFARFADEVSPEGHLTVPLA---------- 53

Query: 75  ISKRRTQKIGDR-SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++  +T ++    +  R +  ++ F ++ ++    TE    ++        +P    E +
Sbjct: 54  VAWAQTSQLKASFTWARRIGILRGFARFCQREDPATEVPPRSLFGSAHRRLIPHIYTEAE 113

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-G 192
             TL++        E          +  LL   GLRI+EAL+LT  ++  D   L I+  
Sbjct: 114 LCTLLEATHGLAPTEGLRPATC-HCVFGLLAATGLRIAEALTLTAADVDMDSGVLHIREA 172

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K  + R+VPL PSV  ++  Y       +        F    G  +N       +++L +
Sbjct: 173 KFHQQRLVPLHPSVTDSLRAYARQRDRLVPRPCCDKFFLRDDGSGVNQPSMLYALQRLCQ 232

Query: 253 YL-----GLPLSTTAHTLRHSFAT----HLLSNGGDLR----SIQSILGHFRLSTTQIYT 299
            L     G       H +RH+F       L   G D+     ++ + +GH ++S T  Y 
Sbjct: 233 QLDWQTRGDYQRHRLHDIRHTFIVRSMLRLYEEGVDIDRAILALSTYVGHAKVSDTYWYV 292


>gi|281492855|ref|YP_003354835.1| phage integrase [Lactococcus lactis subsp. lactis KF147]
 gi|281376507|gb|ADA65993.1| Phage protein, integrase [Lactococcus lactis subsp. lactis KF147]
          Length = 394

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 94/248 (37%), Gaps = 22/248 (8%)

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS---LPRALNEKQAL 135
           + +K   ++ K  L+ IK  L Y  +      +    +   K         +  ++K+  
Sbjct: 139 KREKGKGKNFKVMLNIIKRILDYGMQLGAIKSNPATKVFPPKLKVRTVSKIKYFDDKELK 198

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK-- 193
             ++ +    S E    +   +A+  LL   GLRI EAL+L   +I   +  + +     
Sbjct: 199 MFLEYLE---SLEPSIENQLYNALYRLLLATGLRIGEALALNWSDIDFSEKLVNVTKTTL 255

Query: 194 -----------GDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPG 241
                          RI+ L  +  + +  +       +  + +   +     G+ L   
Sbjct: 256 QSREVQDSPKTKGSNRIISLDNATLQILANWRKYQNNHNKVIGLSDSVVFSYDGQRLIYE 315

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTN 300
             +  +    +   LP +   H  RH+ A+ L++N  + + IQ  LGH +++TT   Y++
Sbjct: 316 SERFRLSSHLKSARLP-NIGLHGFRHTHASLLMNNDVNPKEIQERLGHSKITTTLDTYSH 374

Query: 301 VNSKNGGD 308
           +      +
Sbjct: 375 LAKDKKKE 382


>gi|154000932|gb|ABS57034.1| integrase [uncultured bacterium]
          Length = 158

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 49/94 (52%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 65  RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 124

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           S AT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 125 SSATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|322516068|ref|ZP_08069005.1| phage integrase family prophage Sa05 [Streptococcus vestibularis
           ATCC 49124]
 gi|322125483|gb|EFX96829.1| phage integrase family prophage Sa05 [Streptococcus vestibularis
           ATCC 49124]
          Length = 388

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 84/233 (36%), Gaps = 22/233 (9%)

Query: 96  KSFLKYLKKRKITTESNILNMRNL----KKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           K  L+Y    ++   +   N+       K   +  +  N  +    +    L +   TK+
Sbjct: 148 KRILQYGVVLQVIPTNPASNVVLPRNTQKDKKAKVKHFNNDELKQFL--TYLDSLDNTKY 205

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI------------RI 199
               +  +   L   G RI+EAL+L+  +I  D S + I    +              R 
Sbjct: 206 NTYYDITLYKFLLATGCRINEALALSWSDIDLDNSVVHITKTLNCEMKLNSPKSKSSYRD 265

Query: 200 VPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           + +       + +Y      +       +  +F              + +R      G+ 
Sbjct: 266 IDIDRQTVTMLKKYQRKQTQEAWKLGRTETVVFSNFIKAYPRINQLTKRLRAHFDKAGVN 325

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDW 309
            +   H  RH+ A+ LL++G   + +Q  LGH +LS T   Y++++ +N    
Sbjct: 326 -NIGFHGFRHTHASLLLNSGIPYKELQHRLGHSKLSMTMDTYSHLSKENAKKA 377


>gi|288930584|ref|YP_003434644.1| integrase [Ferroglobus placidus DSM 10642]
 gi|288892832|gb|ADC64369.1| integrase family protein [Ferroglobus placidus DSM 10642]
          Length = 403

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 50/317 (15%), Positives = 116/317 (36%), Gaps = 29/317 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  + + + L ++ G S   +       ++ L F+ +          +++ + ++I   +
Sbjct: 28  KLFEEFRKYLLVQ-GCSDAHMYKMLSHLKKILEFVDY---------DLKKATKSQIEDIV 77

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEKQA 134
           +    +K+ D + ++    +K   K+L   +       +   +  + + LP + L E   
Sbjct: 78  AWINQRKVSDETKRQYKIVLKVLFKWLNGGEYPEAVKWIKTSSKSRKDKLPEKILTEDDV 137

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQG 192
             L+D             + R+ A++ LL+  G RISE  +L   +  D      + I+G
Sbjct: 138 KKLIDAAD----------NPRDKALIALLWETGARISEIYNLKIGDFQDHVYGLQIVIRG 187

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K    R+  +                 + N  + + +    +GK +      + + ++ +
Sbjct: 188 KTGARRLPLIESVPYVRAWLNMHPERDNKNAPVWVNVGTKGKGKKVGYRALVKMLNEVAK 247

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH---FRLSTTQIYTNVNSKNGGDW 309
             G+      H  RHS AT  L+N      +    G      +     Y +++ ++    
Sbjct: 248 KAGIDKPVNPHNFRHSRAT-FLANYFTEAQMCEWFGWVQGSDIP--ARYVHLSGRDIDAA 304

Query: 310 MMEIYDQTHPSITQKDK 326
              I+      + +K K
Sbjct: 305 YARIHGIKDERVPEKSK 321


>gi|329732225|gb|EGG68575.1| site-specific recombinase, phage integrase family [Staphylococcus
           aureus subsp. aureus 21193]
          Length = 405

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 61/350 (17%), Positives = 127/350 (36%), Gaps = 45/350 (12%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ++ N+  ++           WL++ +   G    T++  + +T      +          
Sbjct: 58  LKHNSTKQLEKLTFHDACNEWLEHYKTHSGSKPTTIKEKKSNTNTVKNAIDSKVL----- 112

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNL 119
             I ++++T ++  I     +      ++  +  I+S  KY  K   +   S +  +   
Sbjct: 113 --ISKITHTYLQN-IINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIP 169

Query: 120 KKSNSLPR-------ALNEKQALTLVDNVLLHTSHETKWIDARNS----AILYLLYGCGL 168
           KK+ +           L + +   L+        H+      RN     A++      G+
Sbjct: 170 KKAKTRNELQAKRNNYLEDSEVKELLQCFDYLIKHKRHATRKRNYEMVKALVEFQINNGM 229

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRI------------------------VPLLP 204
           RI E L++   N+  +  TL I G  + +                             + 
Sbjct: 230 RIGELLAIKTDNVDVENKTLEIDGTINWVTDVETGAFGVKETTKTSKSYRTIGLTTQSIN 289

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            ++K +LE      ++     +  +F    G P++       I++      +    T HT
Sbjct: 290 LLKKLMLENKKENQWNAKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHT 349

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           LRH+  + L   G +L++IQ  +GH    TT +IYT+V  +   D M ++
Sbjct: 350 LRHTHISTLAQLGINLKAIQDRVGHSDYKTTLEIYTHVTDQMAKDMMNKL 399


>gi|313605682|gb|EFR83057.1| phage integrase family protein [Listeria monocytogenes FSL F2-208]
          Length = 309

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 81/213 (38%), Gaps = 21/213 (9%)

Query: 103 KKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
               +  ++    +    +N +   +  + LN+ +   L+  + L       W       
Sbjct: 90  VDEGVLNQNPTRKIVIKGKNPRPKKA--KFLNQFEVQALLKELNLKEDINWDW------- 140

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212
            + L+   GLR SEAL+LTP +       + I    D   +             RK  ++
Sbjct: 141 FILLIIKTGLRFSEALALTPSDFDFSTQKISINKTWDYKMVTGSFQPTKNESSNRKIQID 200

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +     F   + ++           +        ++ L     +P + T H+LRH+ A+ 
Sbjct: 201 WQLAMQFSQLIKMKDSDKPIFVKSRVFNSTINNRLKVLCENANIP-TITVHSLRHTHASL 259

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           LL  G  + S+ + LGH  ++TTQ  Y ++  +
Sbjct: 260 LLFAGVSIASVANRLGHSSMTTTQETYLHIIQE 292


>gi|313158800|gb|EFR58184.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 259

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 86/256 (33%), Gaps = 23/256 (8%)

Query: 53  YTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTES 111
             E  ++   + +L  + I  +    ++   +   ++   L  +K  +K          +
Sbjct: 2   RKEYNVSDMPLAELEQSFIEQYHVYLKSDLGLKPTTVSGYLKCLKYVVKIAFNNGWMPRN 61

Query: 112 NILNMR--NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
                +        S    L E +   ++   L +   +       N  +       G+ 
Sbjct: 62  PFSLYQYTAPNPERS---FLTEDELRRMMTTELRYKRQD------YNRDMFLFSCFTGIC 112

Query: 170 ISEALSLTPQ-NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
            ++  SLT      D Q    I G     R       V K +     +      L     
Sbjct: 113 YADMASLTYDRIEQDAQGEWWISGN----RQKTETRYVVKLLPYALFILNKYRGLTGDGR 168

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSIL 287
           +F       ++       ++ + R  G+    + H  RH++AT   LSNG  L ++  +L
Sbjct: 169 VFAMSTLDSIDDS-----LKNIARECGIDKQLSFHLARHTYATTICLSNGVSLETLSKML 223

Query: 288 GHFRLSTTQIYTNVNS 303
           GH  ++TTQIY  V  
Sbjct: 224 GHKNITTTQIYAKVTP 239


>gi|86139826|ref|ZP_01058392.1| Phage integrase [Roseobacter sp. MED193]
 gi|85823455|gb|EAQ43664.1| Phage integrase [Roseobacter sp. MED193]
          Length = 419

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 54/294 (18%), Positives = 106/294 (36%), Gaps = 33/294 (11%)

Query: 47  LIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-----RTQKIGDRSLKRSLSG------- 94
           +  L    E +   + + +++  ++  F++K      R  K+   +  R L G       
Sbjct: 125 ISMLRKMVEPEWGNRLVTEITKQDVERFLNKVAEGRPRPSKLKPNNRARKLQGWKPTPIR 184

Query: 95  -------IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
                  ++         +   ++     R ++  NS  R L+ ++   L        + 
Sbjct: 185 ANRVGQLLRKMFNLAISWEWREDNPAAGFR-MRIENSRERFLSHEELARL-------ATA 236

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
                D R + I+ +    G R+ E  +   ++   D  +        K R V  +P   
Sbjct: 237 LDHAEDQRAAGIIRMCMLTGARVGEVRTARFEHFNLDYGSWAKPADTTKQRKVHRIP--I 294

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            A +         +       LF G    +P+     +R+ R ++R   +P     H LR
Sbjct: 295 SADVATIVRQRKLVVPKGSPWLFPGDTPGQPVKE--IRRFWRNMQREAEIP-DVRIHDLR 351

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320
           H+FA+ L+S G  L  +  +LGH ++STTQ Y +         +  +     P 
Sbjct: 352 HTFASLLVSGGASLEMVGRLLGHSQMSTTQRYAHFMDSPLRAGVDAVAQAFRPR 405


>gi|324112716|gb|EGC06692.1| phage integrase [Escherichia fergusonii B253]
          Length = 343

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 93/239 (38%), Gaps = 29/239 (12%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + S++  +     ++    S + S F +  +  + +  + + NMR    +      L  +
Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q + L+         + K  D   + ++ +    G R  EA++LT   +   + T  ++ 
Sbjct: 179 QIVELL--------ADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITF-VRT 229

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+   + + I+       F                       FQ      + 
Sbjct: 230 KGKKNRSIPISKELYEEIMALDGFNFF-------------------TDCYFQFLSVMEKT 270

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++   +    + 
Sbjct: 271 SIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHLETALR 329


>gi|324009719|gb|EGB78938.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 57-2]
          Length = 326

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 93/239 (38%), Gaps = 29/239 (12%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + S++  +     ++    S + S F +  +  + +  + + NMR    +      L  +
Sbjct: 95  YFSEKWKKGASPVTVNLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 154

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q + L+         + K  D   + ++ +    G R  EA++LT   +   + T  ++ 
Sbjct: 155 QIVELL--------ADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITF-VRT 205

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+   + + I+       F                       FQ      + 
Sbjct: 206 KGKKNRSIPISKELYEEIMALDGFNFF-------------------TDCYFQFLSVMEKT 246

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++   +    + 
Sbjct: 247 SIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHLETALR 305


>gi|291435888|ref|ZP_06575278.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
 gi|291338783|gb|EFE65739.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
          Length = 397

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 62/318 (19%), Positives = 111/318 (34%), Gaps = 51/318 (16%)

Query: 12  FELLKER---QNW---LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
            ELL E    + +   +  L   R  S  T ++Y  D R+     A     +     I  
Sbjct: 61  AELLAEAVTPETFVMVMDWLSSTRRGSLQTKRNYVDDIRRVWGGYAQELGHERFALGI-- 118

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK----- 120
            +   IRA+  +   + +   ++ R L+ + S   Y  ++     + +      K     
Sbjct: 119 FNPDHIRAWRLRMEGRGVPSTTISRYLNALSSLHTYAAEKIDLPRNPVTQDDRPKVDKGN 178

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP-- 178
            S S P  L   +   + +             +  ++ I+ LLY    R++E ++     
Sbjct: 179 TSRSTP-VLEVDEVKAVANA----------AENEFDALIVLLLYTLAGRVTEMVAADVTK 227

Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           +     +S L +  K  K RI+PL  +V + +  +            + PL     G+ L
Sbjct: 228 RIERGRRSYLDVTRKEHKERILPLPTTVAELLDAH-------TAGRTEGPLLLDKDGRRL 280

Query: 239 NPGVFQRYIRQLRRYL------------------GLPLSTTAHTLRHSFATHLLSNGGDL 280
           +     R + +L R                     +    T H LR S  TH+L  G  L
Sbjct: 281 DRHDVARLLTRLGRKARVLTCPTVDKPGHTFTKCKVCRKLTPHVLRASRITHMLDAGEPL 340

Query: 281 RSIQSILGHFRLSTTQIY 298
             +Q+   H   +TT  Y
Sbjct: 341 AEVQAFADHDNPATTVGY 358


>gi|211922743|dbj|BAG81008.1| integrase [Klebsiella oxytoca]
          Length = 171

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 79/187 (42%), Gaps = 27/187 (14%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLPTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRIQ 191
             T+ ++
Sbjct: 162 HGTIIVR 168


>gi|188526777|gb|ACD62270.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 49/94 (52%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 65  RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 124

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +  D+R++Q +LGH  +STT IYT+V
Sbjct: 125 SFATALLRSSYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|89147400|gb|ABD62560.1| integrase [uncultured bacterium]
          Length = 163

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 50/94 (53%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +     F        P     R   ++    Q+ +++     G+P   + HTLRH
Sbjct: 69  RAGKSWLWQYVFPAGKRSIDPRSCIERRHHVSESALQKAMKEAIHRAGVPKRGSCHTLRH 128

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 129 SFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|44004580|ref|NP_982007.1| Tn554-related, transposase A [Bacillus cereus ATCC 10987]
 gi|42741646|gb|AAS45091.1| Tn554-related, transposase A [Bacillus cereus ATCC 10987]
          Length = 519

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 106/243 (43%), Gaps = 32/243 (13%)

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
           K+  R++ R ++  KSFL ++ K K +    I N+  +K+     + L ++Q        
Sbjct: 278 KLRGRNMGRPMNYSKSFLHHINKNKPS----IRNVLKVKEPRKRIQILTKEQVRQTF--- 330

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD---QSTLRIQGKGD--- 195
                  T   + R++ ++ LL+  GLRI EALSL  ++ + D      +R++ +G+   
Sbjct: 331 -------TATTNIRDAFLIQLLFETGLRIGEALSLYLEDFIFDYKKGHRIRLRDRGELEN 383

Query: 196 ------KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRY 246
                   R + +   +     +Y      +L++        L     G+P+N    +  
Sbjct: 384 GAKLKTGEREIFVSQHLMDLYDDYLYEIIDELDIETNFVFIKLRGRNMGRPMNYSDVESL 443

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKN 305
            ++LR+   +      H LRH+ AT       D++ +Q  LGH ++ TT  +Y + + ++
Sbjct: 444 FKRLRKKTKID--IHPHLLRHTHATIYYQETKDIKQVQERLGHAQIQTTMNLYLHPSDED 501

Query: 306 GGD 308
              
Sbjct: 502 IRK 504



 Score = 65.8 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 104/276 (37%), Gaps = 73/276 (26%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+ L+   G S+ T ++Y    +Q+ ++L        T +  +++   ++  F+   R
Sbjct: 29  KYLKYLDST-GKSRNTQKTYCYALKQYFLYLRE------TEKNYKEIKLEDLADFVGWLR 81

Query: 80  --------------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTES-------------- 111
                           K  ++++  +++ + +F  YL + +  ++               
Sbjct: 82  HPYTSLHVASITPVKSKKTEKTVNLTVTAVTNFYDYLYRNEEISKDMNEKLMRQIYAGGR 141

Query: 112 ---------------NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
                          +I N+  +K+     + L ++Q               T   + R+
Sbjct: 142 TRYKSFLHHINKNKPSIRNVLKVKEPRKRIQILTKEQVRQTF----------TATTNIRD 191

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDD---QSTLRIQGKGD---------KIRIVPLLP 204
           + ++ LL+  GLRI EALSL  ++ + D      +R++ +G+           R + +  
Sbjct: 192 AFLIQLLFETGLRIGEALSLYLEDFIFDYKKGHRIRLRDRGELENGAKLKTGEREIFVSQ 251

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
            +     +Y      +L++     +F  +RG+ +  
Sbjct: 252 HLMDLYDDYLYEIIDELDIETNF-VFIKLRGRNMGR 286


>gi|312904161|ref|ZP_07763329.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|310632637|gb|EFQ15920.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
          Length = 408

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 53/318 (16%), Positives = 104/318 (32%), Gaps = 46/318 (14%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR--------RTQKIGDRSLKR 90
           Y    R ++          I    + +    + + FI+              +   ++K 
Sbjct: 94  YRDAIRMYIDPY-------IGNYQLNKYKPADHQKFINSLFTNKELGKNKNGLSYNTVKI 146

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
             + + +  K  +K      +    +              +K     ++   L       
Sbjct: 147 VNAALSNAFKKAQKLGFVKSNPTYLVEFPLDKVKEKTNKEKKLEFYTLEQENLFLDTARN 206

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-----RIQGKGDK--------- 196
           + +        +++  GLR  E ++L   N     + L     R+  K            
Sbjct: 207 FDEYMWYVFFLIIFDLGLRKGEVMALRWFNFDFRDNILTFDKQRLYRKERPGQVILDDVK 266

Query: 197 ----IRIVPLLPSVRKAILEYYDLCP------FDLNLNIQLPLFRGIRGK----PLNPGV 242
                R + +   VR ++LE Y +          +  + Q  LF   RGK    P+    
Sbjct: 267 TDAGKRSLKMTNRVRNSVLELYGINYDLTSNVLPMTNSNQDFLFINHRGKNVGLPIRQRS 326

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                 ++ +   LP     H  RH+ A  L   G  L  I+ +LGH  + TT+IY +V+
Sbjct: 327 VDTAWHRIIQKANLPK-IRIHDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVS 385

Query: 303 SKNGGDWM--MEIYDQTH 318
           ++     +  +E+Y   H
Sbjct: 386 AEVKERAVNKLELYQMQH 403


>gi|332346213|gb|AEE59547.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 330

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 53/309 (17%), Positives = 116/309 (37%), Gaps = 35/309 (11%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           + L + T  SY      F  F+ F+     T  +I +    E R F+   + Q +   + 
Sbjct: 21  KSLRRATEWSYRKVLSGFRKFVGFHR----TPDSIVRRDVQEWRRFV--LKDQGLTSHTW 74

Query: 89  KRSLSGIKSFLKYLKKRKITT--ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
              +  +++   + ++  + T  E+    M  +K+     + L + Q   +V  +   + 
Sbjct: 75  NNKVRHMRAIYNFGEESGLITVSENPFSGM-LVKQEKRRKKTLTKAQITRVVLILQQFSE 133

Query: 147 HETKWIDARNSAILY----------LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
            E +         +            L   G+R+++ L L  +++   +  + ++ +G K
Sbjct: 134 AENQHAGLYIKCAIRPAWFWLTVVNTLRYTGMRLNQLLHLRLKDVCPAEKWIDLRAEGSK 193

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLN--IQLPLFRGIRG-------KPLN----PGVF 243
                 +P  R+   +   L    +      +  LF   R        K +         
Sbjct: 194 THREWRIPVARQLQPQLQKLLDEAVRRGATPEDYLFHYKRFVVPVSEAKRITGLPDEQPV 253

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIYTNVN 302
           + + R+L +  G     + H  RH+ A+ L+S    +L  ++++LGH  +STT  Y  +N
Sbjct: 254 KSFFRRLSQECG--FQVSPHRFRHTLASILMSTPERNLHLVKNMLGHQNVSTTMGYVEMN 311

Query: 303 SKNGGDWMM 311
            +     + 
Sbjct: 312 LEIAAQALE 320


>gi|327404928|ref|YP_004345766.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327320436|gb|AEA44928.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 420

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 58/301 (19%), Positives = 112/301 (37%), Gaps = 24/301 (7%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSLKRS 91
             TL  Y     +   F+      K   + + ++  + +  F     T +KI   +  + 
Sbjct: 133 PKTLTRYHITRNKVANFIKLQF--KAADKPLPEMRLSFVTEFEHYLLTVEKIQSNTAHKY 190

Query: 92  LSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           +  +K  +           +     + +    +     LN+ + L L+ N  +HT+   +
Sbjct: 191 IKNLKKIMNMAVGLDWIPSNPFTQFKCSYTSPDR--EILNQDE-LNLIMNKKMHTARLEE 247

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVR 207
             D     +       G   ++        +M   D    L    +    +    L  + 
Sbjct: 248 VRD-----VFIFCCYTGFAYADVYQFEKDAVMKGLDGNLWLSTNRQKTGTKESVPLLPIP 302

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             IL  Y    + L  N  LP+    R        +  Y++++    G+    T+H  RH
Sbjct: 303 LEILSKYQDHEYCLKYNKLLPVNSNQR--------YNSYLKEIADLCGIKKKLTSHIARH 354

Query: 268 SFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
           +FAT + L+NG  + ++ ++LGH  + TTQIY  V  +   D M+++        TQK+ 
Sbjct: 355 TFATTVTLANGVPIETVSAMLGHSNIRTTQIYAKVVEQKVSDDMLKLKSILQSKTTQKEM 414

Query: 327 K 327
           K
Sbjct: 415 K 415


>gi|254780490|ref|YP_003064903.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040167|gb|ACT56963.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 67

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 64/70 (91%), Positives = 64/70 (91%), Gaps = 4/70 (5%)

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           STTAHTLRHSFATHLLSNGGDLRSIQSILGH RLSTTQIYTNVNSK     MMEIYDQTH
Sbjct: 2   STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR----MMEIYDQTH 57

Query: 319 PSITQKDKKN 328
           PSITQKDKKN
Sbjct: 58  PSITQKDKKN 67


>gi|317131465|ref|YP_004090779.1| transcriptional regulator, XRE family [Ethanoligenens harbinense
           YUAN-3]
 gi|315469444|gb|ADU26048.1| transcriptional regulator, XRE family [Ethanoligenens harbinense
           YUAN-3]
          Length = 470

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 55/267 (20%), Positives = 100/267 (37%), Gaps = 35/267 (13%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEK 132
           F        + D+++      I + L   K+ ++   +         K ++   + L+++
Sbjct: 199 FTIHMSDTGLSDKTILHHHRLISAILAKAKRERLVPFNVAAEHATAPKAAHKEAKYLDDE 258

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           QA TL+  +L       K       A L LL   G R  E   L+  +I  ++  + I+ 
Sbjct: 259 QAHTLLTLLLNEPDIRVK-------AALILLLFSGARRGELCGLSWPDIDFERHLINIER 311

Query: 193 KGDKI----------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP------LF 230
                                R + +   V + +  Y         L  +        LF
Sbjct: 312 ASQYQSGKGVVEKSTKNESSIRSIKIPAFVVELLGAYRAWWNKQKLLYGESWHGEKERLF 371

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
               GKP+NP     ++ +      L    T H LRH+FAT  ++ G D+R++Q+  GH 
Sbjct: 372 VQADGKPINPDTINYWMNRFLEQHQLE-HITPHGLRHTFATLQIAAGVDIRTLQARTGHA 430

Query: 291 RLSTT-QIYTNV---NSKNGGDWMMEI 313
           + ST   IY++      +   D + +I
Sbjct: 431 QASTLVNIYSHAIKSAQEAASDALEDI 457


>gi|89147404|gb|ABD62562.1| integrase [uncultured bacterium]
          Length = 163

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 49/89 (55%)

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +     F  +     P     R   L+  V Q+ ++   R  GL    + HTLRHSFA+H
Sbjct: 74  WEWQYVFPASKRSLDPRAGRERRHHLSETVLQKAVKHAIRQAGLDKRGSCHTLRHSFASH 133

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 134 LLEDGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|186686659|ref|YP_001869854.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186469693|gb|ACC85489.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
          Length = 200

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 77/199 (38%), Gaps = 20/199 (10%)

Query: 118 NLKKSNSLP-------RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
                  LP         L   +  +L+D  L   +        R+  ++ L++  GLR+
Sbjct: 2   RPPPPTRLPNKHYRSREYLTPSEVRSLLDAALERKAR----YAHRDYTLMLLMFRHGLRV 57

Query: 171 SEA----LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
            EA      L    +M  +  + I  +      V  L      +L+       D      
Sbjct: 58  GEAVGAKCGLRWDALMWAERQIFITREKGSDSGVHPLRDDELVLLKELREMLPDSK---- 113

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
             +F   RG+ ++    ++ + +L    GL +    H +RH+   +L++ G + R IQ  
Sbjct: 114 -YIFVSERGEVMSTDAVRKLLGRLAAQAGLDIKVHCHMMRHACGYYLVNQGYNTREIQDF 172

Query: 287 LGHFRLSTTQIYTNVNSKN 305
           LGH  +  T+ YT +N++ 
Sbjct: 173 LGHRDIKHTEKYTKLNARR 191


>gi|299535740|ref|ZP_07049061.1| phage integrase family site specific recombinase [Lysinibacillus
           fusiformis ZC1]
 gi|298728940|gb|EFI69494.1| phage integrase family site specific recombinase [Lysinibacillus
           fusiformis ZC1]
          Length = 376

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 56/337 (16%), Positives = 119/337 (35%), Gaps = 55/337 (16%)

Query: 18  RQNWLQN-------LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
             ++L         L++E      T  +YE   R        +    +    ++ L+   
Sbjct: 54  LHDYLDFWMKEYVDLKLE----PNTYYNYESTIR-------NHIAPHLGKYKVKSLTPHV 102

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGI-KSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
           ++ FI+ +  +    ++L   +  + K+    +   K   E+ +  +  +K     P   
Sbjct: 103 LQQFINLKTREGYARQTLSIIIGILSKALNHAVYPYKYIKENPMHYVELMKDKKRKP--- 159

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
             ++ L L     L   +     +       ++   CGLR+ E   L  ++I  ++ TL 
Sbjct: 160 -TREELKLQTKENLRLINSILDEEHPFYLPFHIGLHCGLRVGEVCGLEWKHINFEEMTLE 218

Query: 190 IQ--------------------GKGDKIRIVPLLPSVRKAILE--------YYDLCPFDL 221
           ++                          R +P   ++ + +                F  
Sbjct: 219 VEQQLVGIKDENGKAQWQPRPPKSKAGYRTIPFGNTLAEMLKRIKKAQIENRLKYGEFYQ 278

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
                  + +   G+   P V +   R++   L +  +   H+LRH+ AT L+ NG  ++
Sbjct: 279 KDPEHDYVCKKENGEHCTPSVIKYNTRKISEKLNISFND--HSLRHTHATTLIENGTPVK 336

Query: 282 SIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQT 317
           ++Q  LGH R + T+  Y ++  K   D    I+D  
Sbjct: 337 TVQKRLGHSRAAVTEDRYVHLTEKMARDA-ANIFDSF 372


>gi|30908728|gb|AAP37596.1| IntI [uncultured bacterium]
          Length = 160

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 66/160 (41%), Gaps = 37/160 (23%)

Query: 178 PQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------ 212
            +++  D  T+ ++ GKG K R + L  S+  ++ E                        
Sbjct: 1   VKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPD 60

Query: 213 ------------YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
                       +     F  + +   P    +R   +     QR  ++     G+    
Sbjct: 61  ALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTSQRAFKRAVEQAGITKPA 120

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+
Sbjct: 121 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 160


>gi|77410891|ref|ZP_00787248.1| integrase/recombinase, phage integrase family [Streptococcus
           agalactiae CJB111]
 gi|77163109|gb|EAO74063.1| integrase/recombinase, phage integrase family [Streptococcus
           agalactiae CJB111]
 gi|319746121|gb|EFV98394.1| phage integrase family prophage Sa05 [Streptococcus agalactiae ATCC
           13813]
          Length = 394

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 50/302 (16%), Positives = 104/302 (34%), Gaps = 29/302 (9%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR-- 90
           K T++ Y          L  +         + +L+   I++ I+K   +           
Sbjct: 88  KHTVK-YNTQLAT-EKLLTVHVIPIFGAYKLDKLTTPLIQSIINKLADKTNKGERKAYLH 145

Query: 91  --SLSGI-KSFLKYLKKRKITTESNILNMRNLKKSNS----LPRALNEKQALTLVDNVLL 143
              +  + K  L+Y    +    +    +   + +        +     +  T  +   L
Sbjct: 146 YDRIHALNKRILQYGVIMQAIPFNPAREVILPRNTKKANTKRVKHFENDELRTFFNY--L 203

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK---------- 193
           +   ++K+ +     +   L   G RI+EAL+L   +I  D + + I             
Sbjct: 204 NNLDKSKYRNFYEVTLYKFLLATGCRINEALALNWSDIDLDNAVVHITKTLNYKQEINSP 263

Query: 194 --GDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQ 249
                 R + +       + +Y      +       +  +F     K  N    Q  +R 
Sbjct: 264 KSKSSYRDIDIDSQTITMLKQYRRRQIQEAWKLGRSETVVFSDFIHKYPNNRTLQTRLRT 323

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGD 308
             +   +P +   H  RH+ A+ LL+ G   + +Q  LGH  LS T  IY++++ +N   
Sbjct: 324 HFKRANVP-NIGFHGFRHTHASLLLNTGIPYKELQYRLGHSTLSMTMDIYSHLSKENAKK 382

Query: 309 WM 310
            +
Sbjct: 383 AV 384


>gi|332829724|gb|EGK02370.1| hypothetical protein HMPREF9455_01640 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 307

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 47/299 (15%), Positives = 115/299 (38%), Gaps = 37/299 (12%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T+ +Y       ++          T     +++ ++++ F+ ++    +  +S+K  L  
Sbjct: 25  TISAYTLLIENHIL---------PTFGGADRINESDVQEFVFEKLKSGLSHKSIKDILIV 75

Query: 95  IKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
           +K  LK+  K      + I +++   ++       L+      ++ ++  + +       
Sbjct: 76  LKMILKFGVKNGYFEYTQI-DIKFPTQREKHDIEVLSRSNHRKIISHIQENFTFRNLG-- 132

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE- 212
                 +Y+    G+RI E  +L  ++I  +   + ++    ++ ++       + IL+ 
Sbjct: 133 ------IYICLCAGMRIGEICALKWEDIDTENGIISVKKTIQRVYMIEGKERYTELILDS 186

Query: 213 ---------------YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
                             L      +            KP  P  ++ Y +Q  + + +P
Sbjct: 187 PKTKNSIRDIPMTRDLLKLLKPLKRIMNHNYFVLTNESKPTEPRTYRNYYKQFMQEINVP 246

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYD 315
           +    H LRHSFAT  + +  D +++  ILGH  +STT  +Y + N +     + ++  
Sbjct: 247 V-LKFHGLRHSFATRCIESKCDYKTVSVILGHSNISTTLNLYVHPNMEQKRKCIDQMVK 304


>gi|295110839|emb|CBL24792.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 411

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 55/331 (16%), Positives = 116/331 (35%), Gaps = 51/331 (15%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-R 79
           + + + ++  L   T  +Y       L     +  +    + I ++ Y+++  F +    
Sbjct: 77  FDRYMSLKSNLKPTTKSNY-------LYMYDRFIRDTFGKRNIAEIKYSDVVQFYNHLIE 129

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            Q++   +L+   + +    +   +  I  ++    +   +   +L      + ALT+  
Sbjct: 130 KQELQINTLETVHTLLHPTFQLAVRDDIIRKNPTDGVMA-ELKKNLGMKTGVRHALTIPQ 188

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG------- 192
                    T  I      I  +  G G RI E L L  ++I  ++  + I         
Sbjct: 189 QRAFMEYIATHPIYYHWWPIFTVFLGTGCRIGEVLGLRWEDINYEKRIISINHNLTYYPV 248

Query: 193 --------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGI 233
                             +R +P+L +V+ A    ++    +   + ++      +F   
Sbjct: 249 GEDRASENHIATPKTEAGMRTIPMLDTVKDAFEMIWEEQKENGWTDAEIDGMTGFVFCNR 308

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLST---------------TAHTLRHSFATHLLSNGG 278
            G  +N     R I+++                         +AH+LRH+F T L     
Sbjct: 309 YGNVMNAQSVNRAIKRISSAYNATEEIEAKKEHREPVLLPNFSAHSLRHTFCTRLCERET 368

Query: 279 DLRSIQSILGHFRLSTTQ-IYTNVNSKNGGD 308
           +L+ IQSI+GH  + TT  IY     +   +
Sbjct: 369 NLKVIQSIMGHKDIQTTMDIYAEATEEKKQE 399


>gi|153811487|ref|ZP_01964155.1| hypothetical protein RUMOBE_01879 [Ruminococcus obeum ATCC 29174]
 gi|149832614|gb|EDM87698.1| hypothetical protein RUMOBE_01879 [Ruminococcus obeum ATCC 29174]
          Length = 396

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 106/298 (35%), Gaps = 38/298 (12%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           RQ+L  +     + + ++ I  +  ++ + +  +   +    +++      +K+      
Sbjct: 107 RQYL--MNALKNDPLGMRAIDTVKQSDAKEWAIRMSEKGYAYKTIDNYKRSLKASFYMAI 164

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           +     ++      + K S+ L     +K  LT      L    E   I ++    + LL
Sbjct: 165 QDDCIRKNPF----DFKLSDVLEDDTEQKVILTPEQEERLLAFMEKDKIYSKYYDEVVLL 220

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVR 207
              GLRISE   LT  +I      L I                    +  R +PL     
Sbjct: 221 LETGLRISEFCGLTM-HIDMQNRILNIDHQLLKDSEIGYYIETPKTKNGKRELPLTERAY 279

Query: 208 KAILEYYDLC---PFDLNLNIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGL 256
           +AI             +       LF    G P        +  G+ ++Y +     L  
Sbjct: 280 QAIQRILKSRGKAQPLIVGGYSNFLFLNREGLPKVAGNYEGMVRGLIKKYNKYHTDKL-- 337

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
             + T H+ RH++ T++ + G +  ++Q ++GH  ++ T   Y +   ++    +  +
Sbjct: 338 -PNITPHSFRHTYCTNMANRGMNPNTLQYLMGHANITMTLGYYAHGTFQSAKAELERL 394


>gi|224503804|ref|ZP_03672111.1| integrase [Listeria monocytogenes FSL R2-561]
          Length = 384

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 109/292 (37%), Gaps = 37/292 (12%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T+  Y+    QF+ +     +       +  +   + + FI+          ++   
Sbjct: 76  SQSTINLYDLAYNQFVDYFGEKRK-------LNSIDAVQYQQFINHLSVD-YAISTVDTR 127

Query: 92  LSGIKSFLKYLKKRKITTESNIL--NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
              I++            ++  +  ++     + +  + +   +   L++        E 
Sbjct: 128 HRKIRAIFNKAVHLGYMKKNPAIGAHISGHDVAKTKAQFMETDKVHLLLE--------EL 179

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-------------KGDK 196
               + + A+++L    G+R  E ++LT ++I   + ++ +               K  K
Sbjct: 180 ANFHSISRAVIFLAVQTGMRFEEIIALTKKDINFAKRSITVNKAWDYKYTNTFIDTKTKK 239

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
            R++ +  S  + +  Y       +      N  + LF     KP++     + ++++  
Sbjct: 240 SRVIYIDNSTVQYLQSYLTWHTDYMKEHDIQNPLMLLFITYHNKPIDNASCNKALKKICN 299

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
            +      T H LRH+     +  G D+  +   LGH  ++TT + Y++++S
Sbjct: 300 TIN-SEPVTLHKLRHTHTGLCVEAGMDIIYVADRLGHDDINTTLKYYSHLSS 350


>gi|83944457|ref|ZP_00956910.1| site-specific integrase/recombinase [Sulfitobacter sp. EE-36]
 gi|83844659|gb|EAP82543.1| site-specific integrase/recombinase [Sulfitobacter sp. EE-36]
          Length = 353

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 98/258 (37%), Gaps = 21/258 (8%)

Query: 59  TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
             + + +L+  +I  + +K R     + ++ R L  +   L+++  +   TE   ++++ 
Sbjct: 91  GKKRLSKLTDADITQYAAKHRA-TCANSTVNRHLQMLGRALRHM-GKVYKTEIPDIDLKA 148

Query: 119 L--KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              K+     R L   +   L          E          ++      G RIS    L
Sbjct: 149 AETKEPRERVRELTTDEQTRLF----AALPQEFHP-------MVAFALMTGARISTITGL 197

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
             +++      +  + KGD++ I P+   +  A+L          +         G   +
Sbjct: 198 LWRDVDMPHREITFRLKGDELMIFPINGELA-ALLSALPKSNVMESRRYVFTRVDGHSAE 256

Query: 237 PL----NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
            +    + GVF    R+      +  +   H LRH+FAT +L    ++  +  +LGH  +
Sbjct: 257 RIQIIASGGVFGTVWRKALLDAAID-NFRFHDLRHTFATRMLRKTQNISLVSKLLGHTNI 315

Query: 293 STTQIYTNVNSKNGGDWM 310
            TT  Y +V + +  D +
Sbjct: 316 ETTSRYAHVLTSDLRDAL 333


>gi|322690727|ref|YP_004220297.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320455583|dbj|BAJ66205.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 379

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 64/353 (18%), Positives = 113/353 (32%), Gaps = 66/353 (18%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +P   +  L      WL  +   R L   TL +Y       +       +  I    + +
Sbjct: 27  MPSQTTPYLKDWLDRWLDEIVKPR-LRPSTLATYRSTVEALI-------KPAIGGVRLGR 78

Query: 66  LSYTEIR---AFISKRRTQ---KIGDRSLKRSLSGIKSFLK---YLKKRKITTESNILNM 116
           L     R    +I+K           RS   + S  ++  K      K  I   +     
Sbjct: 79  LEPKHFRLMEEYITKGDDTCDPPRKPRSSATAGSAWRTLHKALDDAVKEGIIESNPSDRA 138

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              +   +  + L   QA  L++             D     +  L Y  G+R  E L L
Sbjct: 139 EAPRVVYTERKILTPVQAGQLINAE----------NDVMWHLMWRLAYETGMRQGERLGL 188

Query: 177 T---------------------------PQN--------IMDDQSTLRIQGKGDKIRIVP 201
           T                            ++         +  ++ L         R++P
Sbjct: 189 TNSEIQLIDNAVCIVVEWQLKVYNNVKGVRDIPSSLGARHVTGKAYLVPPKTNAGRRVIP 248

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           L  S+   +  Y          N    +F    G PLN  +  R  ++    +GLP    
Sbjct: 249 LPESLAVELGRYIKGTGR---TNSDDLVFVQADGTPLNRMIETRAWKKALNRVGLPDDYV 305

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
            H+ RH+ AT +   G   +  +SI+GH  +S T ++YT+V + +    +  +
Sbjct: 306 PHSARHTAATAMAQLGMSDKVRESIMGHSDISVTNRVYTHVGTADASKAINGV 358


>gi|268608965|ref|ZP_06142692.1| integrase family protein [Ruminococcus flavefaciens FD-1]
          Length = 384

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 52/285 (18%), Positives = 101/285 (35%), Gaps = 43/285 (15%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           +   TI +L+ ++I+  I       +   SL    S  K  ++     +I   +  +N++
Sbjct: 97  LDESTITRLTVSDIQNVIFD--NSDLSPTSLSMLKSAAKQIIQLAIDNRIMDYNPAVNVK 154

Query: 118 NLKKSN-SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             KK+  S  RAL E++   +VD               + +A++      GLR  E ++L
Sbjct: 155 IPKKTELSDRRALTEEERQWIVD----------TPDFMQTAAMIMTF--AGLRRGELVAL 202

Query: 177 TPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
              +I  D+ T+ +                      +RIV +   +   +          
Sbjct: 203 LWTDIDLDKQTITVSKAAEVISGRFTVKPMTKTEAGMRIVYIPSLLADYLRSVKRSNSLY 262

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG-----------LPLSTTAHTLRHSF 269
           +    +   F              +  R+   +             +    T H  RH+F
Sbjct: 263 VCPAPEGGHFYTKTWNRKWDSYLNKLNRKYGDFSSFIVKEGEDPPFVIPRFTPHWCRHTF 322

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
            T L   G D+ + +   GH  + TT  IYT+++S+     M ++
Sbjct: 323 ITMLYLAGIDVLTAKEQAGHNDIRTTMSIYTHLDSRYKQKSMNKL 367


>gi|239907662|ref|YP_002954403.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239797528|dbj|BAH76517.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 352

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 57/318 (17%), Positives = 122/318 (38%), Gaps = 35/318 (11%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIE----RGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
            + PE +S  +    + +L  L       R +   T+++      +   FL  +      
Sbjct: 57  PSTPEAISEVVAVADKIYLDQLAQIYINTRKVEGTTVKT----LNEIRSFLKKHLIPVFA 112

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
            + I ++ Y EI   I  +        +  R LS +K+  ++  K+ +  ++    +R+ 
Sbjct: 113 QRPIDEIRYDEILT-IVGKAYADHSPVTRGRYLSYLKTVFQFGVKQDLIEKNP---LRHW 168

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI--SEALSLT 177
           KK+   PR   +     L+    +   H         +  + + +  G+R   SE  +L 
Sbjct: 169 KKAKEHPRD-TKLTVADLMKIKAVAAPHL--------AWAIEVAWNLGVRTGESELFALK 219

Query: 178 PQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
             ++   QST+++   K    R++P+ P     + E       +  +       R ++  
Sbjct: 220 WADVDWAQSTVKVFATKTQSARVIPISPEFMARLREMQGRAKTEYLIEYAG---RPVKQF 276

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            ++        R   +   +P     + +RH FAT LL  GGDL ++  ++GH  +  T 
Sbjct: 277 RMS-------FRSACKRAEIPYHVVLYDIRHLFATTLLQEGGDLSAVSKLMGHSSVHMTA 329

Query: 297 -IYTNVNSKNGGDWMMEI 313
             Y ++        + ++
Sbjct: 330 NQYYHLLGDEKRRTIAKL 347


>gi|89147663|gb|ABD62690.1| integrase [uncultured bacterium]
          Length = 163

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 39/100 (39%), Positives = 53/100 (53%)

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           L    R A  E+     F  +     P     R   ++  V Q  +++  R  G+    T
Sbjct: 63  LERKYRGASREWAWQFVFPSSRISLDPRTSVRRRHHVDENVLQVAVKRAVRASGVNKPAT 122

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 123 CHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|300916302|ref|ZP_07133049.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 115-1]
 gi|300416391|gb|EFJ99701.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 115-1]
          Length = 376

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 93/239 (38%), Gaps = 29/239 (12%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + S++  +     ++    S + S F +  +  + +  + + NMR    +      L  +
Sbjct: 145 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 204

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q + L+         + K  D   + ++ +    G R  EA++LT   +   + T  ++ 
Sbjct: 205 QIVELL--------ADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITF-VRT 255

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+   + + I+       F                       FQ      + 
Sbjct: 256 KGKKNRSIPISKELYEEIMALDGFNFF-------------------TDYYFQFLSVMEKT 296

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++   +    + 
Sbjct: 297 SIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHLETALR 355


>gi|295692920|ref|YP_003601530.1| integrase/recombinase [Lactobacillus crispatus ST1]
 gi|295031026|emb|CBL50505.1| Integrase/recombinase [Lactobacillus crispatus ST1]
          Length = 112

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 4/115 (3%)

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            I    +  P  L  + +  +F   +G  +     +  +++     G+      H LRHS
Sbjct: 1   MIAYLENARPLLLKNDDEQHVFLNNQGTGITSRGIETVMQKTFNQAGISGKVHPHELRHS 60

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
           FAT +L+NG DLRS+Q +LGH  LS TQIYT+V   +    +   Y +  P   +
Sbjct: 61  FATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAH----LKSDYQKYFPRNKE 111


>gi|293368539|ref|ZP_06615147.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292636336|gb|EFF54820.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 410

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 99/280 (35%), Gaps = 28/280 (10%)

Query: 42  DTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY 101
             R+FL     Y  E I ++ +      +   F+  R  +K    ++   +  +K  +  
Sbjct: 142 HIREFLPH--TYKREDIPLKELNLSFINDFEYFL--RTEKKCRTNTVWGYMIVLKHIISI 197

Query: 102 LKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
            +       +     + + +  +     L + +  TL+D  + +  HE          + 
Sbjct: 198 ARNDGRLPFNPFAGYINSPESVDR--GYLTQAEIQTLIDTPMKNGQHELV------RDLF 249

Query: 161 YLLYGCGLRISEALSLTPQN---IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
                 GL  S+  +LT        D    +  + K         L  V + I+E Y   
Sbjct: 250 VFSVFTGLAYSDVRNLTADCLQTFFDGNLWIITRRKKTNTESNIRLLDVPQRIIEKYKGM 309

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS-FATHLLSN 276
             D           G      +     + ++++ R  G  +  T H  RH+   T LLSN
Sbjct: 310 TRD-----------GHVFPMPSNTTCNKILKEIGRQCGFKVRLTYHVARHTNATTVLLSN 358

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           G  + ++  +LGH  + TTQIY  + ++     M  +  +
Sbjct: 359 GVPIETVSRLLGHTNIKTTQIYAKITAQKISRDMEALSHK 398


>gi|218290710|ref|ZP_03494792.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218239248|gb|EED06447.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 392

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 56/328 (17%), Positives = 107/328 (32%), Gaps = 47/328 (14%)

Query: 32  SKLTLQSYEC-------------DTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           SK T+ +Y                 R ++  +  +   +I    + +L  + I+   +  
Sbjct: 70  SKKTVGAYLREWLDDKRTKVRPGTLRSYVWLVEHHIIPRIGQLELAKLRPSHIQKLYTDL 129

Query: 79  RT--QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           +T  + I  RS+  +   +   L    K  + T +    +   + +    R   ++Q   
Sbjct: 130 QTGDEHISKRSVLHAHRILHQALDRAVKWGLITRNVTDAVEPPRPARQEMRVWTDEQLDA 189

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
            +                R      LL   G+R+ E L+L  +++      +R+      
Sbjct: 190 FLQAARKS----------RYYVAFVLLSSTGMRVGEVLALRWEDVDLQAGLVRVVRSYSY 239

Query: 197 I---------------RIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGK 236
                           R + L P+V   + ++                    +     GK
Sbjct: 240 TGKGYRIEEPKTESGRRSIALPPAVVDLLRKHKTEQAARRLMVGSAWEDNDLVICTAFGK 299

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TT 295
           P+     +    ++    GLP     H LRH+ AT LL  G   + +Q  LGH  ++ T 
Sbjct: 300 PILQHNLRTSFHRIIERTGLPR-IRLHDLRHTHATILLQRGVHPKVVQERLGHSDITLTL 358

Query: 296 QIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
             Y++V           I D   PS  +
Sbjct: 359 NTYSHVVPGLQEAAARSIDDLFSPSSKR 386


>gi|84387844|ref|ZP_00990859.1| Site-specific recombinase XerD-like [Vibrio splendidus 12B01]
 gi|84377359|gb|EAP94227.1| Site-specific recombinase XerD-like [Vibrio splendidus 12B01]
          Length = 411

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 58/296 (19%), Positives = 119/296 (40%), Gaps = 24/296 (8%)

Query: 37  QSYECDTRQFLIFLAFYTE--EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           +++  D  +F  +   +T+  +KIT   + Q+    +      R  +K    ++ R+++ 
Sbjct: 130 KTWRDDIARFEHWKHLHTKPIDKITGVHLHQVQAKLLAT--EYRPGKKYAAATVDRTIAL 187

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +K+ LK    R +        +  +   N   R L  ++   ++     +    T     
Sbjct: 188 MKTVLK-EAYRLLDIPYIGDKVSLINPDNMRTRYLTMEETAAVIRTSRDYYCRVTGN--- 243

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEY 213
                + LL+  G R SE  +   ++I     T+ +   K      VPL P + +   E 
Sbjct: 244 ----FIALLFLTGCRDSELRTRKWKDISLIDKTMFVPDTKNGSSMTVPLTPFMVELFREL 299

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFAT 271
            ++            +F G R +  +    +    +++   G+  P     H  RHSFAT
Sbjct: 300 LNMRQ-----KGNPYVFFG-RKERSHISQPRNAFARIKERAGIKNPHEVCFHVARHSFAT 353

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK---NGGDWMMEIYDQTHPSITQK 324
           +L+ NG D+ ++Q ++ H  LS+TQ Y   + +   N  D +  +  +  P +  +
Sbjct: 354 NLIENGVDVLTVQRLMNHKDLSSTQKYVKHSQQKLLNSSDTLSSVLKEQAPRLAHR 409


>gi|210612354|ref|ZP_03289279.1| hypothetical protein CLONEX_01480 [Clostridium nexile DSM 1787]
 gi|319937022|ref|ZP_08011432.1| integrase [Coprobacillus sp. 29_1]
 gi|210151614|gb|EEA82621.1| hypothetical protein CLONEX_01480 [Clostridium nexile DSM 1787]
 gi|319807958|gb|EFW04537.1| integrase [Coprobacillus sp. 29_1]
          Length = 432

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 64/359 (17%), Positives = 121/359 (33%), Gaps = 80/359 (22%)

Query: 22  LQNLEIER-----GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           L +L +E       LS  T+ SY+    +         +  I  + ++ ++   ++A+I 
Sbjct: 68  LLDLWVEEELKPGNLSNGTVMSYQGTVNR-------IKQHPIGNRKLKTVTADHLQAYID 120

Query: 77  KRRTQKIGDR-SLKRSLS--GIKSF-------LKYLKK-RKITTESNILNM--RNLKKSN 123
                      +  ++LS   ++ F        ++    +++ T + +  +  R  K+  
Sbjct: 121 FLSFGGTNPDGTTAKALSKGYLRLFSAVLQGAFRFAVFPKRLITFNPMQYVVWRGKKEEY 180

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL--YLLYGCGLRISEALSLTPQNI 181
            L    + +   T   +   +   E       N A+L   + Y  GLRI E   LT Q+I
Sbjct: 181 ELFSYEDGETTSTPTLSYDQYQRLEDFLKKKNNPALLPIQIAYYTGLRIGEVCGLTWQDI 240

Query: 182 MDDQSTLRIQG----------------KGDKIRIVPLLPSVRKAILE------------- 212
             ++  L ++                 K  KIR V    ++   +               
Sbjct: 241 NLEEQYLTVRRSMRYNGARHKTEIGATKRKKIRTVDFCDTLAAILKTAKAEQHKNRFRYG 300

Query: 213 ---------------------YYDLCPFDLNLNIQLPLFRGIRGKPLN--PGVFQRYIRQ 249
                                Y      ++    +   F  +R       P       R 
Sbjct: 301 ELYSLNYYLEVKEKDRTYYEVYSLPRAEEVPEGYKELSFVCLRPDGAFEAPSTVGIMCRT 360

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGG 307
            R+ L        H LRH++ ++LLSNG   + +Q +LGH  +STT  IY +   +   
Sbjct: 361 ARKKLEGLEDFHFHMLRHTYTSNLLSNGAAPKDVQELLGHTDVSTTMNIYAHATREAKR 419


>gi|167920132|ref|ZP_02507223.1| phage integrase [Burkholderia pseudomallei BCC215]
          Length = 382

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 57/273 (20%), Positives = 104/273 (38%), Gaps = 28/273 (10%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           + +L+  ++   ++KR+ +     ++K  +  +++ +  + K        I+    L+ S
Sbjct: 111 LHELTTRDVDLLVAKRKAEGDKPATIKHEIGLLRATINEMAKLGFKVSREII-FPELRTS 169

Query: 123 NSLPRALN---EKQALTLVDNVLLHT--------SHETKWIDARNSAILYLLYGCGLRIS 171
             L R L+   E   L  +D   L T        + E       N  I   L   G R S
Sbjct: 170 YRL-RYLDSSDESALLLELDPERLKTRINSSKPQTPEMTRNMQDNYDITVFLLDTGCRYS 228

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           E  ++    I  D  T+ +     +   V  + S  +AIL       ++     Q  +F 
Sbjct: 229 EVANIPWSAINLDTCTISLYRSKVRNEDVLHMTSRLEAILR----RRWEERRTGQRYVFE 284

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPL---------STTAHTLRHSFATHLLSNGGDLRS 282
              G     G   + I++     GL             T HTLRH+FA+ L+  G  L  
Sbjct: 285 DRTGN--ERGYSTKSIKKAIERAGLNDPVLVKERGGRVTLHTLRHTFASKLVKAGVSLYE 342

Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  +LGH     TQ Y +++  +     +++ D
Sbjct: 343 VSVLLGHSDPKMTQRYAHLSPNDASRKAVKVID 375


>gi|312973881|ref|ZP_07788052.1| phage integrase family protein [Escherichia coli 1827-70]
 gi|310331415|gb|EFP98671.1| phage integrase family protein [Escherichia coli 1827-70]
          Length = 299

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 114/278 (41%), Gaps = 25/278 (8%)

Query: 37  QSYECDTRQFLIFLAFYTEE----KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           +S++ D ++F  ++     +     +  + I+Q+ +  +     +   Q+    +  R+L
Sbjct: 21  KSWDKDVQRFTQYIEPRLGKIRYCDLRAREIQQVLFDMLEG---RIHGQQYAPSTCNRAL 77

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           + +K+  +Y  ++ +  ++    +  LK++N   R  +  +   ++D     T +  K  
Sbjct: 78  AILKTMGRYALRQDVLEKNEADKIPLLKENNQRTRFFDADEIRRILD---AATQYPNKAA 134

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
                 ++ +L   G R SE L++  ++I     TL I    +       L     +I++
Sbjct: 135 GG----LIAMLLLTGTRKSEMLNVRHEHIDRANRTLFIPYTKNGRSRTVYLSDAALSIID 190

Query: 213 YYDLCPFDLNLNIQLPLF-RGIRGKPLNPGVFQRYIRQLRRYLGLPLS-TTAHTLRHSFA 270
                     +     LF     GKP++    +    ++    G+  +    HT RHS A
Sbjct: 191 AIP------RVGSNPYLFAIKDNGKPISEP--RWAYEKILAQCGIDKNEVCFHTTRHSVA 242

Query: 271 THLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           + L+S+G   L  +++ L H  + +T+ Y  +  +   
Sbjct: 243 SLLVSSGQFSLYDVKAQLAHASIQSTERYAKLTPERMR 280


>gi|301054011|ref|YP_003792222.1| DNA integration/recombination/invertion protein [Bacillus anthracis
           CI]
 gi|300376180|gb|ADK05084.1| DNA integration/recombination/invertion protein [Bacillus cereus
           biovar anthracis str. CI]
          Length = 282

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 98/285 (34%), Gaps = 30/285 (10%)

Query: 46  FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR 105
            L       +  I +  + +L+   I+        + I + S+      +KS L    K+
Sbjct: 1   MLCTFKSAIKPSIGMVALYKLNVMHIQKCYKTAIDRGIANNSVLLMHRILKSALNLAVKQ 60

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
            I + +        KK  +  +   E++        LLH+      I         L   
Sbjct: 61  NIISRNPADFAEIPKKERTSIQTWTEEEVKKF----LLHSQESRYHIGY------LLAIT 110

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKI-------------RIVPLLPSVRKAILE 212
            G+R+ E L L  Q++  ++ T+ I                    R +P+     +++ +
Sbjct: 111 TGMRMGEVLGLRWQDVDFEKHTVTINQTSGHDNQIKKTAKTNSSKRTIPVPKETIESLKK 170

Query: 213 YYDLCPFDL-----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +  L   +             +     G  +    F++   +     G+      H LRH
Sbjct: 171 HKVLINQEKLRLGSAYQDFDLINCNEFGMIIKKANFRKKFIRAIHNAGI-KEIKFHDLRH 229

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMM 311
           + AT LL  G + + I   LGH  +S T  +Y++V      + + 
Sbjct: 230 THATILLKQGVNPKIISERLGHTDISMTLSVYSHVLPNMQEEAVK 274


>gi|295841246|dbj|BAJ07022.1| integrase [uncultured bacterium]
          Length = 393

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 103/291 (35%), Gaps = 60/291 (20%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-T 80
           L+   + R  S  T+++YE   R++  F      + +T           ++A +      
Sbjct: 125 LRKAALIRQYSYRTVEAYEYWARKYFSFHRRNPGKVLTPGG--------VKASLEHLVLV 176

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +K+   + K++ + +          ++         +  K    LP  L+ ++   ++  
Sbjct: 177 RKLAAGTQKQAFNALDFLFGEDLGVELGDLGEFARSKRPKM---LPVVLSREETGEILGG 233

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRI 199
           +  +              +  ++YG GLR+ EAL L  +++    + ++++ GKG K RI
Sbjct: 234 LDGNLLL-----------VAGIIYGSGLRLMEALRLRVKDVDSSLNQIQVRDGKGKKERI 282

Query: 200 VPLLPSVRKAI------------------------------------LEYYDLCPFDLNL 223
             L    R+++                                     ++     F  + 
Sbjct: 283 TMLPERFRESLTSHLAGVKEIHGRDLARNYAGTSFWPSLSRKYPYAPRQWIWQYVFPASR 342

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
               P       + L+    QR I       G+    T HTLRHSFATHLL
Sbjct: 343 LSVDPSTGKSIRQHLHESALQRAIPAAALKAGIDKRVTCHTLRHSFATHLL 393


>gi|255100596|ref|ZP_05329573.1| integrase [Clostridium difficile QCD-63q42]
 gi|296449292|ref|ZP_06891077.1| transposase [Clostridium difficile NAP08]
 gi|309778264|ref|ZP_07673193.1| transposase [Erysipelotrichaceae bacterium 3_1_53]
 gi|296261891|gb|EFH08701.1| transposase [Clostridium difficile NAP08]
 gi|308913952|gb|EFP59763.1| transposase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 396

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 105/298 (35%), Gaps = 38/298 (12%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           RQ+L  +     + + ++ I  +  ++ + +  +   +    +++      +K+      
Sbjct: 107 RQYL--MNALKNDPLGMRAIDTVKQSDAKEWAIRMSEKGYAYKTIDNYKRSLKASFYMAI 164

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           +     ++        K S+ L     +K  LT      L    E   I ++    + LL
Sbjct: 165 QDDCIRKNPFE----FKLSDVLEDDTEQKVILTPEQEERLLAFMEKDKIYSKYYDEVVLL 220

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVR 207
              GLRISE   LT  +I      L I                    +  R +PL     
Sbjct: 221 LETGLRISEFCGLTT-HIDMQNRVLNIDHQLLKDSEMGYYIETPKTKNGKRELPLTERAY 279

Query: 208 KAILEYYDLC---PFDLNLNIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGL 256
           +AI             +       LF    G P        +  G+ ++Y +     L  
Sbjct: 280 QAIQRILKNRGKAQPLIVGGYSNFLFLNREGLPKVAGNYEGMVRGLIKKYNKYHTDKL-- 337

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
             + T H+ RH++ T++ + G +  ++Q ++GH  ++ T   Y +   ++    +  +
Sbjct: 338 -PNITPHSFRHTYCTNMANRGMNPNTLQYLMGHANITMTLGYYAHGTFQSAKAELERL 394


>gi|325680115|ref|ZP_08159681.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324108190|gb|EGC02440.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 395

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 115/340 (33%), Gaps = 56/340 (16%)

Query: 19  QNWLQNLEIER----GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
            ++L    IE      L   T+ +Y+   R        +   KI    +  ++  +++  
Sbjct: 66  HDYLNY-WIEMYCIPNLKPTTVANYKKYIR-------LHISPKIGKYRLATITAEQLQKL 117

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQ 133
           I+          ++      + S L Y  +       S +  ++  K S +     + + 
Sbjct: 118 INDMVANGYSKNTVIGIKGVLSSSLNYAVQPLHYLKTSPMAYVKIPKGSRT--NYRSSQY 175

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG- 192
              +++  ++          +     L   Y CG+R+ EA ++T  N+     T+ I   
Sbjct: 176 KREVIEKDIIDEIFVRFPKGSSTYLPLMFAYHCGMRLGEAFAITWDNVNFADRTVTINKQ 235

Query: 193 ---------------KGDKIRIVPLLPSVRKAILE----------YYDLCPFDLNLNIQL 227
                          K +  R + +  ++ + + E          YY      +  + +L
Sbjct: 236 LQWDLEKKFWYLTPPKYNSSRTIDIDETIVELLKELQEKQIRAKEYYADEYSLIYYDEEL 295

Query: 228 PL---------FRGIRGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
            +         F  +      + P   Q   + + +      + T H+LRH+  T LL  
Sbjct: 296 GINESTGNVIDFVNVYENGGFIQPRTIQHTSQVIHK---FYPAFTFHSLRHTHCTRLLEA 352

Query: 277 GGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYD 315
           G  ++ +Q  LGH  +S T  IY ++           + D
Sbjct: 353 GLPIKYVQERLGHKNISVTMDIYNHLTQNQAELSKRALED 392


>gi|227431825|ref|ZP_03913850.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227352415|gb|EEJ42616.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 373

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 40/295 (13%), Positives = 112/295 (37%), Gaps = 33/295 (11%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           + T++  E    + +I    +   +     +  ++  +++ +++  + + +  R +    
Sbjct: 81  QHTVE--ESTLNRTMIVFKTHIISEWGDTLVTDITPIKLQRYVNTLQGKLLRYRKVAGYF 138

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--PR-ALNEKQALTLVDNVLLHTSHET 149
              +  L    +  +        +   K+   +  P+  +   +    VD       ++ 
Sbjct: 139 ---RRLLNIAVRMDMIPVDPFTKIEMPKERRQVNKPKQFMEVDEFKAFVDV----LDNQY 191

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----------------QGK 193
           K+++ +   +L L    G+R  E L+L  Q+I  +   + I                   
Sbjct: 192 KYMNQQAYTLLRLAVFTGMRTEEILALQWQHIDFNGGYISIVQALGRGLAGSTYIKEPKS 251

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
               R + +   +   + ++++   ++        +F+             +++R +   
Sbjct: 252 QTSRRTLKIENKMMVVLADWFEATGYN---KSDDYVFQNEGHTLQTIRP-NKWLRSVSDK 307

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGG 307
            G+ +  + H LRH++AT  +  G +++ +Q+ LGH  +S T  IY++V  +   
Sbjct: 308 YGVAVGLSMHKLRHTWATLAIDQGANIKQVQTYLGHADVSMTLNIYSDVTKRASD 362


>gi|89147444|gb|ABD62582.1| integrase [uncultured bacterium]
          Length = 163

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 39/94 (41%), Positives = 51/94 (54%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           KA  E+     F        P    +R   ++P   QR +R+  +  G+    + HTLRH
Sbjct: 69  KAGKEWGWQYVFPSKQLSVDPRGGQVRRHHVSPEALQRAVREAVKKAGMVKPVSVHTLRH 128

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFATHLL NG DLR IQ +LGH  + TT IYT+V
Sbjct: 129 SFATHLLLNGVDLRQIQELLGHANVETTMIYTHV 162


>gi|325278828|ref|YP_004251370.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
 gi|324310637|gb|ADY31190.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
          Length = 409

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 57/262 (21%), Positives = 102/262 (38%), Gaps = 23/262 (8%)

Query: 62  TIRQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
            +++L Y  I AF     T +K    ++ ++L  +    KY  K     ++       LK
Sbjct: 158 PLKKLDYQFIAAFQQYLLTDRKQIPNTVNKTLQKVIEVAKYAVKCGYLEKNPFNAYERLK 217

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                   L +++   L +        E          +       GL   EA +L   +
Sbjct: 218 VGTKSITFLTDEEIEQLENYHFTQHRLEQV------KDLYLFSVYTGLAYREAANLCKAH 271

Query: 181 IMDD-QSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
           ++    + + I   + K      +PLLP  +K + +Y        N  I  PL   I  +
Sbjct: 272 LIKGLDNEIWINMTRQKTGNSMEIPLLPPAQKILSKYIT-----GNEPINKPLLPMISNQ 326

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA-THLLSNGGDLRSIQSILGHFRLSTT 295
            +N      Y++++   LG+    T HT R +FA T LL+N   +  +  +LGH  +  T
Sbjct: 327 RMNS-----YLKEIAEILGINKRLTTHTARKTFASTILLNNDVPIEIVSKLLGHSSIRVT 381

Query: 296 Q-IYTNVNSKNGGDWMMEIYDQ 316
           +  Y  V +KN    M ++  +
Sbjct: 382 EAAYAQVMNKNTSRHMNQLKQK 403


>gi|325680240|ref|ZP_08159802.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324108057|gb|EGC02311.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 390

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 51/301 (16%), Positives = 111/301 (36%), Gaps = 41/301 (13%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQ 81
           + L+++ G+ + T   Y               ++      I ++  ++ + ++ K  R  
Sbjct: 82  RYLKLKTGVRQSTQIGYRTVINLL-------KKDPFGSLRIDKIRLSDAKIWLIKLQRED 134

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKKSNSLPR-ALNEKQALTLVD 139
                S+      ++   +  +   +  ++     +  + +++S PR AL EKQ    +D
Sbjct: 135 GKSYSSIHTIRGVLRPAFQMAEDDDLIRKNPFRFELATIIENDSEPREALTEKQMNDYLD 194

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------- 191
            V      +  +    +   +++L+  G+RISE   LT  +I  D+  + ++        
Sbjct: 195 YVR----DDDYFSRYYDG--IFILFNTGMRISEFCGLTVSDIDFDEHRINVERQLIRTSS 248

Query: 192 --------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL----PLFRGIRGKPLN 239
                        IR +P+   V +A            +          LF    G P  
Sbjct: 249 GKYIVQAPKTHSGIRFIPMTFEVEQAFRRVISSRRRVKSEPAVGGCIGFLFLDKNGMPKL 308

Query: 240 PGVFQRYIRQLRRYLGLPL-----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              +Q+ ++++R              T H  RH+F T++   G + + +Q I+GH  +  
Sbjct: 309 AMHWQKVMQRIREKYCHERLRTLPKITPHVCRHTFCTNMARKGMNPKMLQYIMGHADVGV 368

Query: 295 T 295
           T
Sbjct: 369 T 369


>gi|77918417|ref|YP_356232.1| site-specific recombinase/integrase [Pelobacter carbinolicus DSM
           2380]
 gi|77544500|gb|ABA88062.1| site-specific recombinase/integrase [Pelobacter carbinolicus DSM
           2380]
          Length = 396

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 113/302 (37%), Gaps = 34/302 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L++       +K T +S++ D  +    L      K     +  L+  EI+ ++++ 
Sbjct: 113 REYLEH-------AKQTKKSWKDDYNK----LTNQIIPKWGEVPLTCLTPKEIQGYLNQV 161

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITT--ESNILNMRNLKKSNSLPRALNEKQALT 136
           + +     +  R  + +        K       ++ +  +   + +    R L+ ++   
Sbjct: 162 KART-SGTNANRHYAVLNVLYNLAVKWGEIDPGKNPMPGVSKFRDNPGRTRYLSMEECKR 220

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195
            +   L     +      R           G R  E L    +++  +  T+ + + K  
Sbjct: 221 FL-AALEEVPGQLAACALRLLLF------TGCRAGEVLKSKWEDVSMEGRTMLLPETKNG 273

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYL 254
           K R+V L P     I +       +        LF G    KPL  G  ++      +  
Sbjct: 274 KSRVVHLNPLSLAEIEKLKAFRQPN-----NPYLFPGSSEDKPL--GTVRKTFEHALKLA 326

Query: 255 GLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN---SKNGGDWM 310
           GL       HTLRH+ A+ L + G  L +I+  LGH  +  T+ Y +++   +++  D +
Sbjct: 327 GLEGTDVVIHTLRHTHASLLANLGESLETIKVSLGHSSVKMTERYAHISGSKTRDASDHL 386

Query: 311 ME 312
            E
Sbjct: 387 AE 388


>gi|113476634|ref|YP_722695.1| phage integrase [Trichodesmium erythraeum IMS101]
 gi|110167682|gb|ABG52222.1| phage integrase [Trichodesmium erythraeum IMS101]
          Length = 189

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 80/183 (43%), Gaps = 3/183 (1%)

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q        +L + +   +   R+ AIL LL+   LR SE +++   +I     T+ I+G
Sbjct: 3   QLPEKCCKQILQSPNTNHFQGKRDYAILRLLWDNALRRSEVVAIDIGDISLSDRTIWIKG 62

Query: 193 KGDKIRIVP-LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           KG + +    +      A+ +Y  +    +N  + + L     G  L        +++  
Sbjct: 63  KGTQDKERITINHRTVAALKDYLSIRKGGINDLLFISLSSANWGNRLADDTVYNLVKRTC 122

Query: 252 RYLGLPLSTTAHTLRHSFATHLLS-NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
             LG+    + H +RHS  TH L  + GD+R +Q    H  + T  +Y + N K+  + M
Sbjct: 123 SELGIDKPMSPHKIRHSAITHFLDKSDGDIRKVQQYSRHKNVQTVLVYDD-NRKDYQEQM 181

Query: 311 MEI 313
            ++
Sbjct: 182 TDL 184


>gi|323937185|gb|EGB33465.1| phage integrase [Escherichia coli E1520]
          Length = 399

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 113/278 (40%), Gaps = 25/278 (8%)

Query: 37  QSYECDTRQFLIFLAFYTEE----KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           +S++ D ++F  ++     +     +  + I+Q+ +  +     +   Q+    +  R+L
Sbjct: 121 KSWDKDVQRFTQYIEPCLGKIRYCDLRAREIQQVLFDMLEG---RIHGQQYAPSTCNRAL 177

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           + +K+  +Y  ++ +  ++    +  LK++N   R  +  +   ++D       +  K  
Sbjct: 178 AILKTMGRYALRQDVLEKNEADKIPLLKENNQRTRFFDADEIRRILD---AAARYPNKAA 234

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
                 ++ +L   G R SE L++  ++I  D  +L I    +       L     +I++
Sbjct: 235 GG----LIAMLLLTGTRKSEMLNVMHKHIDRDNRSLFIPYTKNGRSRTVYLSEAALSIID 290

Query: 213 YYDLCPFDLNLNIQLPLF-RGIRGKPLNPGVFQRYIRQLRRYLGLPL-STTAHTLRHSFA 270
                     +     LF     GKP++    +    ++    G+       HT RHS A
Sbjct: 291 SIP------RVGSNPYLFAIKDNGKPISEP--RWAYEKILAECGIDKSEVCFHTTRHSVA 342

Query: 271 THLLSNG-GDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           + L+S+G   L  +++ L H  + +T+ Y  +  +   
Sbjct: 343 SLLVSSGQYSLYDVKAQLAHASIQSTERYAKLTPERMR 380


>gi|157160328|ref|YP_001457646.1| phage integrase family site specific recombinase [Escherichia coli
           HS]
 gi|157066008|gb|ABV05263.1| site-specific recombinase, phage integrase family [Escherichia coli
           HS]
 gi|323938204|gb|EGB34464.1| phage integrase [Escherichia coli E1520]
          Length = 343

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 93/239 (38%), Gaps = 29/239 (12%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + S++  +     ++    S + S F +  +  + +  + + NMR    +      L  +
Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q + L+         + K  D   + ++ +    G R  EA++LT   +   + T  ++ 
Sbjct: 179 QIVELL--------ADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITF-VRT 229

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+   + + I+       F                       FQ      + 
Sbjct: 230 KGKKNRSIPISKELYEEIMALDGFNFF-------------------TDCYFQFLSVMEKT 270

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++   +    + 
Sbjct: 271 SIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHLETALR 329


>gi|317497470|ref|ZP_07955790.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895256|gb|EFV17418.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 396

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 105/298 (35%), Gaps = 38/298 (12%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           RQ+L  +     + + ++ I  +  ++ + +  +   +    +++      +K+      
Sbjct: 107 RQYL--MNALKNDPLGMRAIDTVKQSDAKEWAIRMSEKGYAYKTIDNYKRSLKASFYMAI 164

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           +     ++        K S+ L     +K  LT      L    E   I ++    + LL
Sbjct: 165 QDDCIRKNPFE----FKLSDILEDDTEQKVILTPEQEERLLAFMEKDKIYSKYYDEVVLL 220

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVR 207
              GLRISE   LT  +I      L I                    +  R +PL     
Sbjct: 221 LETGLRISEFCGLTT-HIDMQNRILNIDHQLLKDSEMGYYIETPKTKNGKRELPLTERAY 279

Query: 208 KAILEYYDLC---PFDLNLNIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGL 256
           +AI             +       LF    G P        +  G+ ++Y +     L  
Sbjct: 280 QAIQRILKNRGKAQPLIVGGYSNFLFLNREGLPKVAGNYEGMVRGLIKKYNKYHTDKL-- 337

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
             + T H+ RH++ T++ + G +  ++Q ++GH  ++ T   Y +   ++    +  +
Sbjct: 338 -PNITPHSFRHTYCTNMANRGMNPNTLQYLMGHANITMTLGYYAHGTFQSAKAELERL 394


>gi|218289451|ref|ZP_03493679.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218240319|gb|EED07501.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 145

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 8/143 (5%)

Query: 173 ALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            ++L  Q +  + + LR+ +GKG K R VPL    ++A++ Y  + P          LF 
Sbjct: 1   MINLNIQEVDLEGNVLRVCRGKGRKDRFVPLNEMAKEALIRYLMVRPDV----DDDALFI 56

Query: 232 GIR--GKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           G+R   K +          +  R  G+     T H LRH+FAT LL  G DLR++Q +LG
Sbjct: 57  GMRTSRKRIGKNYLNALFHRCLREAGIRRKGLTLHKLRHTFATRLLERGADLRTLQELLG 116

Query: 289 HFRLSTTQIYTNVNSKNGGDWMM 311
           H  LSTTQ+Y + +S+     + 
Sbjct: 117 HENLSTTQVYVHASSERLLQAVR 139


>gi|329963190|ref|ZP_08300927.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328528886|gb|EGF55826.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 412

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 53/290 (18%), Positives = 113/290 (38%), Gaps = 22/290 (7%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           +  + +T++ YE   R     +    E+      + +++   +RAF    +T+K     +
Sbjct: 130 KDYALITVRRYESCKRYLAELIRQKYEKD--DLPLAEVNGELVRAFEFYLKTEKECQQNT 187

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           + R +  +K         +   +   + ++  +K   +   L   + LT+      H   
Sbjct: 188 VIRYMKCLKKITNLALANEWIAKDPFIGIKFHEKEV-IREFLTMDELLTIY-----HKEF 241

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRIVPLLP-- 204
             + I       ++  +  GL   +   L+P++I+ D+   L I+    K + +  +P  
Sbjct: 242 PLERITVVRDVFIFAAF-TGLAFIDVQQLSPEHIVKDNNGNLWIRKPRQKTKNMCNIPLL 300

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            +   IL  Y   P      + LP+    +           Y++++     +  + T H 
Sbjct: 301 DIPLEILRKYADYPASKKKGVLLPVPCNQKM--------NSYLKEIANLCQIKKNLTTHR 352

Query: 265 LRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            RHS+AT   L+NG  + ++  +LGH  +  TQ Y  V   +    M  +
Sbjct: 353 ARHSYATSVCLANGVSIENVTKMLGHSNIKMTQHYARVLDSSILKDMNNV 402


>gi|326201194|ref|ZP_08191066.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
 gi|325988762|gb|EGD49586.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
          Length = 371

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 59/346 (17%), Positives = 120/346 (34%), Gaps = 76/346 (21%)

Query: 22  LQNLEIER--GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           L+ L+ +   G ++ +L+SY    + F  +L     + ++IQ        +I  FI   +
Sbjct: 29  LKYLKFKDNSGSARNSLRSYCYHLKLFFEYLEKKNLDYLSIQ------IDDIAEFIRWLQ 82

Query: 80  --------------TQKIGDRSLKRSLSGIKSFLKYLKKRK------------------- 106
                               R++   LS +  F  Y+++ +                   
Sbjct: 83  SPFGKLNVTPIALTEMGRSPRTINTVLSTVLGFYDYIRRHEEYNNQLSVQMIRQISGSRR 142

Query: 107 -------ITTESNILNMR--NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
                    +++   N +   +K     P+ + +K   TL++             + R+ 
Sbjct: 143 GFKDFLYHISKNKKYNAKLFKIKVPKQKPKTIPKKDIETLINAC----------NNIRDK 192

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI-----------RIVPLLPSV 206
            ++ LL+   +RI EAL+L  ++   D + + I+ +G              R + +   +
Sbjct: 193 FLIQLLWESSIRIGEALALWLEDFEIDGNKIHIRDRGQLENMAEIKTVCSPRDIDVSNDL 252

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
                +Y   C  D      + +    R   KP+         ++L    G+      H 
Sbjct: 253 INFYFDYIAECHTDEVDTNHVFIKLSGRSKYKPMEYQDVVSLFKRLGEKTGII--IMPHV 310

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDW 309
           LRHS  T L  +G     +    GH  + TT Q+Y + +  +    
Sbjct: 311 LRHSSLTELRRSGWKDEHLMKRAGHAHIQTTLQMYVHPSDDDIRKE 356


>gi|282598730|ref|YP_003358821.1| phage integrase protein [Enterococcus phage phiEf11]
 gi|300861304|ref|ZP_07107391.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|307290877|ref|ZP_07570768.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|258598100|gb|ACV83357.1| phage integrase protein [Enterococcus phage phiEf11]
 gi|300850343|gb|EFK78093.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|306498077|gb|EFM67603.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
          Length = 378

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 59/330 (17%), Positives = 115/330 (34%), Gaps = 48/330 (14%)

Query: 18  RQNWLQNLEIERGLS--KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            +N L +   +  LS  K ++++Y    +     +            IR       + FI
Sbjct: 65  LENLLNSWWQQHQLSIRKTSVKAYGKILKYIFSNMNVDVL-------IRNTDTKFFQDFI 117

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-------PRA 128
           +            K+  S +     Y +   +  E+ I  ++ +K   +         + 
Sbjct: 118 NDL---PHSWEYKKKFKSVLNMSFTYAQDMGMIDENPINRVKVVKPPLTKENFENIESKY 174

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L E++   L+          + +    +  +   +Y  GLR  EA+SLT  + + ++  +
Sbjct: 175 LEEREVYQLLSYYY------STFQSVHHGRLAEFMYLTGLRAGEAISLTINDYVKNEHAI 228

Query: 189 RIQGKGDKI-----------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
            + G  D                   R V L     + I E                LF 
Sbjct: 229 LVNGTLDYSNGYKNATKELPKTLASFRKVELSNRAVEIIEELILEREIKFKEQTN-YLFV 287

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLG---LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           G  G P+    F   +++    LG   +  + ++H  RHS  + L      +++I   +G
Sbjct: 288 GKTGNPIQVNSFNASLKKANESLGKNKINKTISSHIFRHSHISLLAELNVPVKAIMERVG 347

Query: 289 HFRLSTT-QIYTNVNSKNGGDWMMEIYDQT 317
           H    TT +IYT+V  K     ++E  ++ 
Sbjct: 348 HVDTETTLKIYTHVT-KKAKTNLVEALNKY 376


>gi|221133407|ref|ZP_03559712.1| Tyrosine recombinase xerC [Glaciecola sp. HTCC2999]
          Length = 383

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 97/277 (35%), Gaps = 19/277 (6%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           +++     R          +     Q +  +   E+  F +    +++    +   +  I
Sbjct: 115 IKTRLRTFRNIESMWRLRIKPIFGKQRLDDIKVLELERFQTSLIEKRLSGSHVTGHIKLI 174

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
                   + ++ T++    +  +K  N   R L+ ++    ++ ++LH           
Sbjct: 175 SRMFTLAIQWELITKNPCDKVEYMKFDNQKERFLSTEEQKRFIEVLMLHPQR------PV 228

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILE 212
           N  +++LL   G+R   A +L    I  D+  + +     K  K   + L  +    +  
Sbjct: 229 NLLMIFLLV-TGVRSGVAKALKWSWINMDKQIITVPPSIAKNKKQNTIFLNTTAMDILKR 287

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                   L       +F       L    F++  +   +   +  S   H LRH+F ++
Sbjct: 288 --------LAGTDPTYVFINP-MTHLPYNDFKKSFKTALKAAQISDSVRIHDLRHTFCSN 338

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           L+S+   L S+Q +  H   STT  Y  V+       
Sbjct: 339 LVSSNVSLASVQQLANHACYSTTLRYAKVSQDTLRQA 375


>gi|108805035|ref|YP_644972.1| phage integrase [Rubrobacter xylanophilus DSM 9941]
 gi|108766278|gb|ABG05160.1| phage integrase [Rubrobacter xylanophilus DSM 9941]
          Length = 378

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 51/299 (17%), Positives = 105/299 (35%), Gaps = 34/299 (11%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
           +    ++ I +  + +  +    +R+L+   + A    R        S+ +    +   L
Sbjct: 88  QSTFDRYEIAVRVHLKPALGRHKLRKLTPAHVAALYQDRLDAGYAPASVNKLHVTLHKAL 147

Query: 100 KYLKKRKITTESNILNMRNLK-KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
               +  +   +    ++  +  +    R L+  +   L++               R  A
Sbjct: 148 DQAVRWHMVPRNVAEVVKAPRPTAREEMRTLSAGETRRLLEA----------ARGDRLEA 197

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---------------GKGDKIRIVPLL 203
           +  L    G+R  E L+L  Q++  + +T+ ++                     R + L 
Sbjct: 198 LYVLAVTTGMRQGELLALKWQDVDLENATVSVRRTITKSGGRLLLGEPKTSKGRRTIHLT 257

Query: 204 PSVRKAILEYYDLCPFDLN-----LNIQLPLFRGIRGKPLNPGVF-QRYIRQLRRYLGLP 257
               +A+ E+      ++         +  +F    G  +NP    QR    L +   LP
Sbjct: 258 GPAVQALREHLSRQMQEIQHLGDLYRDEGFIFTSESGTLINPSNLRQRSFTPLLKKARLP 317

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYD 315
                H LRH+ AT LLS     + +Q +LGH  ++ T   Y++V    G      + D
Sbjct: 318 Q-IRFHDLRHTCATLLLSRNVHPKYVQELLGHSNIAITLDTYSHVIPGMGDHTARAMED 375


>gi|89147628|gb|ABD62673.1| integrase [uncultured bacterium]
          Length = 163

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 37/111 (33%), Positives = 52/111 (46%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +G G       L      A   +     F        P  R +R   +     Q  ++  
Sbjct: 52  KGGGKVFMPSALDRKYPHAQRSWAWQYVFPAAKLSVDPRSREVRRHHVQEKNLQNAVKLA 111

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            R  G+  + + HT RHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 112 LRRAGIAKAASCHTFRHSFATHLLENGSDIRTVQELLGHKDVSTTMIYTHV 162


>gi|309385835|gb|ADO66762.1| phage integrase SAM-like protein [Enterococcus faecium]
          Length = 364

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 60/344 (17%), Positives = 135/344 (39%), Gaps = 51/344 (14%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFIS 76
            ++++Q+   ++  S  T   Y  + + F  +L +       +I +IRQL+  ++  + S
Sbjct: 24  IKDFVQD-REDKDQSPRTTLEYLKNYKLFYEWLLSESIVPDTSITSIRQLTAYDLNLYKS 82

Query: 77  KRRTQ--------------------KIGDRSLKRSLSGIKSFLKY-------LKKRKITT 109
             + +                     +   ++ R+++ +K   KY          +    
Sbjct: 83  HLKRRTKENVKKETTKTKLKDNNNLGLSTSTINRNITALKVLFKYLSKSSNNPLGKPYLE 142

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVD----NVLLHTSHETK------------WID 153
            + +  +  +    +L    N  +    +D    N L + ++E K               
Sbjct: 143 NNPMDQVATITDKTTLAARANAIEKKLFLDEGTQNYLDYIANEYKKTLSKRALIYYQRDV 202

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            R+ AI  L+ G GLR+SE +++  +++  +++ + +  KG+K   V +     + +  Y
Sbjct: 203 ERDLAINALILGSGLRLSEVVNINLEDLSLEKNNVVVTRKGNKRDAVNIAAFAMEYLANY 262

Query: 214 YDLCPFDLNL-NIQLPLFRGIRG---KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
             +      +   +  LF  I     K ++    +R + +  +  G  +  + H LRH+ 
Sbjct: 263 LAIRKERYKVTENEKALFLAIYQGEAKRISGIAIERMVAKYSK--GFRVQVSPHKLRHTL 320

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           AT L      L      LGH   +TT +YT++++    D +  +
Sbjct: 321 ATRLYQQTNSLVLTAQQLGHTSTNTTTLYTHIDNAATIDALNAL 364


>gi|156744303|ref|YP_001434432.1| integron integrase [Roseiflexus castenholzii DSM 13941]
 gi|156235631|gb|ABU60414.1| integron integrase [Roseiflexus castenholzii DSM 13941]
          Length = 318

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 56/300 (18%), Positives = 114/300 (38%), Gaps = 60/300 (20%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           +  S  T ++     R+F+ F          ++  R++   EI AF++     +++   +
Sbjct: 21  KHYSLRTEEASIGWVRRFIRFH--------NLRHPREMGSREIGAFLTYLAVEEEVAAST 72

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++LS +    + + + ++  +   L++   K+   LP AL+  +   ++         
Sbjct: 73  QNQALSALLFLYREVLQIELDAD---LSITPAKRPQYLPAALSRAEVRAVL--------- 120

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
               +   +  +  LLYG GLR+ E L L  +++  +Q  L ++ GKG K R   L   +
Sbjct: 121 --AALSGTHQLMAQLLYGSGLRLLECLRLRVKDLDVEQRQLMVRQGKGGKDRATLLPARL 178

Query: 207 RKAIL------------------------------------EYYDLCPFDLNLNIQLPLF 230
            + +                                     E+     F  +     P  
Sbjct: 179 HEPLRAHLEHVRSIHEQDLREGFGEVWLPDALARKLPSASREWVWQYVFPSSRRSVDPRS 238

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
             +     +    Q+ +R+  +   +    T HT RH FATH+   G D+R++Q + GH 
Sbjct: 239 GRMMRYHQDESGLQKAVRRAAQQASVQKRVTCHTFRHRFATHVREAGDDMRTVQDLPGHK 298


>gi|256840177|ref|ZP_05545685.1| LOW QUALITY PROTEIN: tyrosine type site-specific recombinase
           [Parabacteroides sp. D13]
 gi|256737449|gb|EEU50775.1| LOW QUALITY PROTEIN: tyrosine type site-specific recombinase
           [Parabacteroides sp. D13]
          Length = 267

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 54/285 (18%), Positives = 95/285 (33%), Gaps = 47/285 (16%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRT------------QKIGDRSLKRSLSGIKS 97
              Y  +KIT     +++   ++ FI+  RT             K    S     +  K 
Sbjct: 2   FRAYAGDKIT---FTKVNTEFVKGFIAYLRTAMNFNYENSEKKSKYEVLSQNTQHNLYKK 58

Query: 98  FL---KYLKKRKITTESNILNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           F    +   +  I   + +  + N    K  +     L  ++   L++         T  
Sbjct: 59  FAWVIRKAMQADIMAINPLDKIDNTDKPKPEDGQREFLTIEEIKRLMN---------TPC 109

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQ-GKGDKIRIVPLLPSVR 207
            D             GLR S+   L   ++ +D      LRI+  K  +    P+     
Sbjct: 110 EDDMLKCAFIFCCLVGLRYSDVKKLVWNDLYEDNEGAIILRIRVTKTKRCEDFPISKEAL 169

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           K + E        +    +                  R ++      G+  + T H  RH
Sbjct: 170 KWLPERIGSGDEKIFKLPKN-------------DNSNRKLKHWCTLAGITKNVTFHVARH 216

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           + AT  LS G  + ++  +LGH ++STTQIY  V   N    + +
Sbjct: 217 TAATLNLSLGVPIETVSKLLGHTKISTTQIYAKVIDANKKAAVHK 261


>gi|89147460|gb|ABD62590.1| integrase [uncultured bacterium]
          Length = 163

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 8/132 (6%)

Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
           + E   L   ++ +    + I           L      A  E      F        P 
Sbjct: 39  VEEVSLLHVADLREGFGEVYI--------PEALARKYPNACREMGWQYVFPSKNRSVDPR 90

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
                   +     Q+ ++   R  G+      HT+RHS+ATHLL NG ++R +Q ++GH
Sbjct: 91  SGKTMRHHVKESGLQKAVKTAVRQAGITKRVGCHTMRHSYATHLLENGINIRMVQELMGH 150

Query: 290 FRLSTTQIYTNV 301
             + TT+IYT+V
Sbjct: 151 KDVKTTEIYTHV 162


>gi|319902961|ref|YP_004162689.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319417992|gb|ADV45103.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 410

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/290 (17%), Positives = 118/290 (40%), Gaps = 22/290 (7%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           +  + +T++ Y  + +++L  +  Y   K  +  + +++   +RAF    +T++     +
Sbjct: 130 KDYALITVRRY-DNCKKYLNEVIRYKYAKDDL-PLTEVNGELVRAFEFYLKTERECQQNT 187

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           + R +  +K  +      +  T++  L ++  +K   +   L   + + +      +   
Sbjct: 188 VIRYMKCLKKIINLALSNEWITKNPFLGIKFHEKEV-IREFLTIDELMRIY-----NKEF 241

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRIVPLLP-- 204
           E   I       ++  +  GL   +   L+ ++I+ D+     I+    K   +  +P  
Sbjct: 242 ELDRITLVRDVFIFAAF-TGLAFIDVQQLSAEHIIKDNNGHYWIRKARQKTNNMCNIPLL 300

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            +   IL  Y   P  L   + LP+    +           Y++++     +    + HT
Sbjct: 301 DIPMQILNKYSNNPQCLKKQVLLPVPCNQKM--------NSYLKEIADLCNINKRMSTHT 352

Query: 265 LRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            RHS+AT   L+NG  + ++  +LGH  +  TQ Y  V   +    MM +
Sbjct: 353 ARHSYATSVCLANGVSIENVAKMLGHSNIKMTQHYAKVMDSSILKDMMNV 402


>gi|315506748|ref|YP_004085635.1| integrase family protein [Micromonospora sp. L5]
 gi|315413367|gb|ADU11484.1| integrase family protein [Micromonospora sp. L5]
          Length = 403

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 55/300 (18%), Positives = 98/300 (32%), Gaps = 32/300 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK- 77
           + W++ +  E  ++  T+  Y    R             +    IR+ S   +  F+   
Sbjct: 80  ELWVEEITAEERIAPQTIHRYATSVR-------TSILPALGNLRIREASVGRLDRFLRDI 132

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ---A 134
            + +    + +K  LS          +      + + +   L+K       L  +Q    
Sbjct: 133 AKDRPSAAKGVKVVLS---QMFALAVRHGAIPTNPVRDTGRLRKPRRAVVVLTAEQLQAV 189

Query: 135 LTLVDNVLLHTSHETKWIDARNSA-ILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQ 191
            T +         +     + + A ++ L+   G RI E L+L  +++    ++ TL I 
Sbjct: 190 RTAIREWQRPIPGKPGPRHSGDLADVVDLMLATGARIGEILALRWEDLDLAAERPTLTIC 249

Query: 192 GK------GDKIRIVPLLPSV--RKAILE-----YYDLCPFDLNLNIQLPLFRGIRGKPL 238
           G           R          R+ +L                 N    +F   RG  L
Sbjct: 250 GTLVFIKSQGFFRQPWTKSDAGYRRVVLPRFAVGMLMARKPTAADNPHDAIFASRRGTWL 309

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           +P   +R  RQ R    L    T HT R +    L+    D +S  + LGH     T  Y
Sbjct: 310 SPNNVRRQWRQARAEADLDW-VTPHTFRKT-VATLIKEEIDTKSAAAQLGHSSEEVTDTY 367


>gi|282907695|ref|ZP_06315537.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|283959808|ref|ZP_06377249.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|282328600|gb|EFB58871.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|283789400|gb|EFC28227.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus
           A017934/97]
          Length = 404

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 58/288 (20%), Positives = 110/288 (38%), Gaps = 38/288 (13%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKK 121
           I ++++T ++  I     +      ++  +  I+S  KY  K   +   S +  +   KK
Sbjct: 113 ISKITHTYLQN-IINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKK 171

Query: 122 SNSLPRA-------LNEKQALTLVDNVLLHTSHETKWIDARNS----AILYLLYGCGLRI 170
             +           L + +   L++       H+      RN     A++      G+RI
Sbjct: 172 VQTRNEFQAKRNNYLEDSEVKELLECFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRI 231

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKI--------------------RIVPLLPS----V 206
            E L++   N+  +  TL I G  + +                    R + L       +
Sbjct: 232 GELLAIKTDNVDVENKTLEIDGTINWVTDVVTGAFGVKETTKTSKSYRTIGLTAQSINLL 291

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           +K +LE      ++     +  +F    G P++       I++      +    T HTLR
Sbjct: 292 KKLMLENKKENQWNDKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLR 351

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           H+  + L   G +L++IQ  +GH    TT +IYT+V  K   D M ++
Sbjct: 352 HTHISTLAQLGINLKAIQERVGHSDYKTTLEIYTHVTDKMAKDMMNKL 399


>gi|253571058|ref|ZP_04848466.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840007|gb|EES68090.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 407

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 55/302 (18%), Positives = 109/302 (36%), Gaps = 29/302 (9%)

Query: 14  LLKERQNWLQNL--EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           LL   + +++N    +    ++ +L  Y       + FL   ++ K++      L  + I
Sbjct: 109 LLSYFRLFMRNFEKRVGINRTESSLNGYRNSYDHLVRFLQ--SQYKLSDIPFAALDRSFI 166

Query: 72  RAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
             F    RT+  +   ++      +K+ +       I T    +         S  + L 
Sbjct: 167 EKFDLHLRTECHLAPGTIVNLTVRLKTIVGEAIADGIITAFPFVGYE-PTHPQSEQKYLT 225

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            ++   ++   L    H       R+  +       G+  S+   LT +N+   +  +  
Sbjct: 226 TEELNRIMTTPL----HSRTLYHVRDLFLFSC--YTGIPYSDMCMLTNENLSLAEDGIWW 279

Query: 191 ----QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
               + K      +PL+      I +Y D+ P             G      +      Y
Sbjct: 280 IRSSRKKTGVDFEIPLMELPLHIIEKYRDVAPE------------GKLLPMYSNSSLNHY 327

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           ++Q+    G+      H  RH++AT + LS+G  L ++  +LGH R+ TTQ+Y  V    
Sbjct: 328 LKQIAVLCGIERKLVFHVARHTYATEITLSHGVPLETVSKMLGHSRIGTTQLYAKVTDNK 387

Query: 306 GG 307
             
Sbjct: 388 ID 389


>gi|254513363|ref|ZP_05125428.1| tyrosine recombinase XerC 2 [Rhodobacteraceae bacterium KLH11]
 gi|221532367|gb|EEE35363.1| tyrosine recombinase XerC 2 [Rhodobacteraceae bacterium KLH11]
          Length = 188

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 83/194 (42%), Gaps = 13/194 (6%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L + ++E+  S  T+ + E   R F+ +      E    Q I +      + ++   
Sbjct: 2   RRFLAH-QLEKHYSPRTVANRETYLRYFVAWADER--ELRYPQEITKPILEAYQRYLFHH 58

Query: 79  RTQK---IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQA 134
           R Q    +  R     +  I++   +L K      +   ++   +    LP+A L++ + 
Sbjct: 59  RKQNGQPLSVRFQHGRIIPIRAMFSWLVKNNHLLSNPASDLELPRLDKRLPKAILSQSEV 118

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GK 193
             +++ +       +  +  R+ AIL +LY  G+R  E ++L   +   ++ T+ I+ GK
Sbjct: 119 EAILNGI-----DISDPMGIRDRAILEVLYSTGMRRMEVIALRWDDFDIERGTIFIREGK 173

Query: 194 GDKIRIVPLLPSVR 207
           G   R+VP+     
Sbjct: 174 GKVDRMVPIGERAL 187


>gi|213417521|ref|ZP_03350663.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 116

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 5/121 (4%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           +    L  +   +L+ L +ER LS +TLQ+Y+      +         +  +++ +Q   
Sbjct: 1   MTEVALSLDVSRFLRYLGVERQLSPITLQNYQRQLDAIIALAG-----ETGLKSWQQCDA 55

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
             +R+F  + R + +G  SL   LS ++SF  +L  +     +    +   K    LP+ 
Sbjct: 56  AIVRSFAVRSRRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKN 115

Query: 129 L 129
           +
Sbjct: 116 I 116


>gi|212703057|ref|ZP_03311185.1| hypothetical protein DESPIG_01096 [Desulfovibrio piger ATCC 29098]
 gi|212673645|gb|EEB34128.1| hypothetical protein DESPIG_01096 [Desulfovibrio piger ATCC 29098]
          Length = 287

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 101/285 (35%), Gaps = 29/285 (10%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           +++L + +I R +   T  S      Q L     +          R++   ++R F++ +
Sbjct: 8   EDYLAH-QITRDV---TRTSTRHHLNQLLALFGGWQA--------RRVGADQVREFLAVQ 55

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           +T+ +   +    +   ++ L +  +      S +   R  +            +A  + 
Sbjct: 56  KTRGVMATTAHHRVRLWRTVLAWAVETGRLPASPLAGFRLHRPRARRIDPPTRAEAARMY 115

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRI--SEALSLTPQNIMDDQSTLRIQGKGDK 196
                      K        ++ L    G RI  SE   L   ++      +R+      
Sbjct: 116 -----------KVAAPHIRRVIVLGMAAGPRIGPSELFRLAWADVDLAAGYMRMPNAAKG 164

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R    +  +R  IL        + +     P     +G+P+          Q R+  G+
Sbjct: 165 SRDDSRIVPIRDDILPLL-RAWKEEDEKQGCPWVIHWQGRPV--RCIGHAWHQARKAAGI 221

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST-TQIYTN 300
               T ++LRH+  T  L +G D++++  ++GH   +   ++Y +
Sbjct: 222 TRRITPYSLRHAMPTEALEHGADVKAVAEVMGHADPTMLLRVYQH 266


>gi|188587530|ref|YP_001922726.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179352489|gb|ACB86500.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 187

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/208 (24%), Positives = 88/208 (42%), Gaps = 29/208 (13%)

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
           +++  +++LKK + + R L +K                    + R+  +  L    GLRI
Sbjct: 2   NHVSPIKDLKKIDHIKRILKQK--------------------NKRDYCLFVLGINTGLRI 41

Query: 171 SEALSLTPQNIMDDQS-----TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           S+ L L   +++D+           + K  K + + L    R AI EY      D  L++
Sbjct: 42  SDLLELKVSDLVDENGKPKKNLELKEKKTGKNKQMILNEKARSAIREYVQ----DSKLSL 97

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
              +F+  +G P++     R I +  + +G+      HTLR +F  H   NG D+  IQ+
Sbjct: 98  NDSIFKSQKGGPISREHAYRVINEAAKAVGIKERVGTHTLRKTFGYHAYINGVDISLIQN 157

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           I  H   S T  Y  +  ++  D  + I
Sbjct: 158 IFNHSAPSVTLRYIGIEQEDIDDVYINI 185


>gi|291535241|emb|CBL08353.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
          Length = 396

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 105/298 (35%), Gaps = 38/298 (12%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           RQ+L  +     + + ++ I  +  ++ + +  +   +    +++      +K+      
Sbjct: 107 RQYL--MNALKNDPLGMRAIDTVKQSDAKEWAIRMSEKGYAYKTIDNYKRSLKASFYMAI 164

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           +     ++        K S+ L     +K  LT      L    E   I ++    + LL
Sbjct: 165 QDDCIRKNPFE----FKLSDVLEDDTEQKVILTPEQEERLLAFMEKDKIYSKYYDEVVLL 220

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVR 207
              GLRISE   LT  +I      L I                    +  R +PL     
Sbjct: 221 LETGLRISEFCGLTT-HIDMQNRILNIDHQLLKDSEMGYYIETPKTKNGKRELPLTERAY 279

Query: 208 KAILEYYDLC---PFDLNLNIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGL 256
           +AI             +       LF    G P        +  G+ ++Y +     L  
Sbjct: 280 QAIQRILKNRGKAQPLIVGGYSNFLFLNREGLPKVAGNYEGMVRGLIKKYNKYHTDKL-- 337

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
             + T H+ RH++ T++ + G +  ++Q ++GH  ++ T   Y +   ++    +  +
Sbjct: 338 -PNITPHSFRHTYCTNMANRGMNPNTLQYLMGHANITMTLGYYAHGTFQSAKAELERL 394


>gi|69243994|ref|ZP_00602572.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus
           faecium DO]
 gi|258617149|ref|ZP_05714919.1| site-specific tyrosine recombinase XerS [Enterococcus faecium DO]
 gi|68196720|gb|EAN11145.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus
           faecium DO]
          Length = 361

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 60/344 (17%), Positives = 135/344 (39%), Gaps = 51/344 (14%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFIS 76
            ++++Q+   ++  S  T   Y  + + F  +L +       +I +IRQL+  ++  + S
Sbjct: 21  IKDFVQD-REDKDQSPRTTLEYLKNYKLFYEWLLSESIVPDTSITSIRQLTAYDLNLYKS 79

Query: 77  KRRTQ--------------------KIGDRSLKRSLSGIKSFLKY-------LKKRKITT 109
             + +                     +   ++ R+++ +K   KY          +    
Sbjct: 80  HLKRRTKENVKKETTKTKLKDNNNLGLSTSTINRNITALKVLFKYLSKSSNNPLGKPYLE 139

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVD----NVLLHTSHETK------------WID 153
            + +  +  +    +L    N  +    +D    N L + ++E K               
Sbjct: 140 NNPMDQVATITDKTTLAARANAIEKKLFLDEGTQNYLDYIANEYKKTLSKRALIYYQRDV 199

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            R+ AI  L+ G GLR+SE +++  +++  +++ + +  KG+K   V +     + +  Y
Sbjct: 200 ERDLAINALILGSGLRLSEVVNINLEDLSLEKNNVVVTRKGNKRDAVNIAAFAMEYLANY 259

Query: 214 YDLCPFDLNL-NIQLPLFRGIRG---KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
             +      +   +  LF  I     K ++    +R + +  +  G  +  + H LRH+ 
Sbjct: 260 LAIRKERYKVTENEKALFLAIYQGEAKRISGIAIERMVAKYSK--GFRVQVSPHKLRHTL 317

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           AT L      L      LGH   +TT +YT++++    D +  +
Sbjct: 318 ATRLYQQTNSLVLTAQQLGHTSTNTTTLYTHIDNAATIDALNAL 361


>gi|332829432|gb|EGK02081.1| hypothetical protein HMPREF9455_01715 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 406

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/294 (16%), Positives = 108/294 (36%), Gaps = 22/294 (7%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           +  S  T++ +E   +    ++   Y ++ I ++ + ++    +  ++  +  + +   S
Sbjct: 129 KDFSISTVEKFETSLKALKAYIKHTYKKDDILLREVDRIFIQNLEFYL--KTERNMQHNS 186

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             + L  +K  ++     +   +   + ++  K        L++++   L+         
Sbjct: 187 ALKHLKSLKKVIRIALANEWIKKDPFVGIQ-FKHDQVSVEFLSQEELDILIKKEFTIKRL 245

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGDKIRIVPLLP 204
           E          I       GL   +   L P++++ D +    +R   +         + 
Sbjct: 246 EVV------RDIFIFCAFTGLAFVDVKHLRPEHLLKDNNDALWIRKPREKTGNMCNVPVL 299

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           S  K I++ Y   P  L   + LP+        L       Y++++    G+    T H 
Sbjct: 300 SSAKVIIDRYKDHPLCLKNGVLLPV--------LTNQKMNSYLKEIADLCGITKRLTTHV 351

Query: 265 LRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            RH+ AT   L+N   L ++  ILGH     TQ Y  V   +    M ++  + 
Sbjct: 352 ARHTAATVVFLANNVSLENVSKILGHSSTKMTQHYAKVLDSSILRDMQQVEAKF 405


>gi|295841279|dbj|BAJ07046.1| integrase [uncultured bacterium]
          Length = 394

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 59/284 (20%), Positives = 102/284 (35%), Gaps = 60/284 (21%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           R  S LT ++Y     ++  F      + I            +R F+       K+   +
Sbjct: 133 RQYSVLTERAYIGWGNRYFDFHLRQGSDPIR--------AAGVREFLENLVLGDKVSVST 184

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
            K++L+ +      +         ++ + +  ++   LP  L+ ++   ++       + 
Sbjct: 185 QKQALNALDFLFGEVVG---LPLGDLGDFKRSRRPRRLPMVLSRREVELVLREFSGMPAM 241

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206
            T            LLYG GLR+ EAL L  ++I  + S + +  GKG K RI  L    
Sbjct: 242 VTG-----------LLYGSGLRLMEALRLRVKDIDFELSQIVVFDGKGKKDRITVLPERY 290

Query: 207 RKAILE----------------------YYDLCPFDLNLNIQLP---LFRGI-------- 233
           R  +                        +  L     N  ++LP   +F           
Sbjct: 291 RGLLENHLGRVKGLHGRDLGRGYAGATFWPALACKLPNAPLELPWQYVFPSQILTVDPHS 350

Query: 234 ---RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                  L+  V QR +++     G+    T HTLRH+FATHLL
Sbjct: 351 GRTFRHHLHESVMQRTVKRATARAGIDKRVTCHTLRHTFATHLL 394


>gi|167588311|ref|ZP_02380699.1| Phage integrase [Burkholderia ubonensis Bu]
          Length = 397

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 59/337 (17%), Positives = 113/337 (33%), Gaps = 57/337 (16%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI-------------SKRR 79
             T Q+Y  +  + L++      + ++  ++        R F+              ++ 
Sbjct: 61  PTTFQNYRKEAERLLLWAVIACGKPLS--SLTHEDLLVYRQFLLAPAPADVWCASGGRKH 118

Query: 80  TQK----------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA- 128
            +           +   S ++++  +     +L +      +  L++   +     PR  
Sbjct: 119 PRGDPRWRPFYGPLSPASQRQAMVILNVMFAWLVQAGYLAGNP-LSLSRQRMRKPAPRVT 177

Query: 129 --LNEKQALTLVDNVLLHTSHETKWIDARNSA--ILYLLYGCGLRISEALSLTPQNIM-- 182
             L      ++ D +      + +     + A  +  LLY  GLRI+EA   T       
Sbjct: 178 RHLGPALWQSVKDAIDAMPRDDARACFHYDRARWLFTLLYLGGLRITEAADNTMGGFFCR 237

Query: 183 -----DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGI 233
                 D+  L + GKG K R+VP    +   +  Y              +  L L  G 
Sbjct: 238 RDAEGRDRWWLDVTGKGGKQRLVPATDEMMAELARYRRAHQLPALPGPGEDTPLVLPVGH 297

Query: 234 RGKPLNPGVFQRYIRQLRRYLG---------------LPLSTTAHTLRHSFATHLLSNGG 278
             KPL        ++ + R+                 +    +AH LRHS  +H+     
Sbjct: 298 ARKPLTRAALHTIVKSVFRHAADRLRAQGDAGEQQARVLEQASAHWLRHSAGSHMADGRL 357

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           DLR ++  LGH  L+TT  Y + +         E + 
Sbjct: 358 DLRIVRDNLGHVSLTTTSQYLHADDDVRHRETEEKHR 394


>gi|149916579|ref|ZP_01905094.1| Integrase [Roseobacter sp. AzwK-3b]
 gi|149809553|gb|EDM69412.1| Integrase [Roseobacter sp. AzwK-3b]
          Length = 188

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 17/192 (8%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L++ Q   ++          T+    R+  I+   +  GLR  E  +L+  ++ D++ 
Sbjct: 5   QTLSDAQLKRILQWC------STRRHSTRDRTIIQFSFYAGLRAKELAALSRGDVYDEEG 58

Query: 187 TLR-------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
            +R        Q KG + R V +   +R+ + EY          N Q PLF   +G   +
Sbjct: 59  RVREQFTLSAAQAKGGRSRTVWINRRLRRVLEEYAAQLNI---TNPQQPLFESQKGGAFS 115

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                +    + +  G     ++H+ R SF T+L +    +R +  + GH  + TTQ Y 
Sbjct: 116 ANTMTQLFLDIYKAAGFA-HASSHSGRRSFITNLAAKSVSVRVLAELAGHSSIQTTQRYI 174

Query: 300 NVNSKNGGDWMM 311
           +VN K   D + 
Sbjct: 175 DVNPKQMSDAVE 186


>gi|256838893|ref|ZP_05544403.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
 gi|319642542|ref|ZP_07997191.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|256739812|gb|EEU53136.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
 gi|317385833|gb|EFV66763.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
          Length = 403

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 58/332 (17%), Positives = 124/332 (37%), Gaps = 38/332 (11%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYEC------DTRQFLIFLAFYTEE 56
            N++PE +      ER+     L + R     +  +Y        + RQF+        +
Sbjct: 97  ANSVPEYLLQAGEVERER----LRV-RSKEINSTSTYRQSKTTQLNLRQFI---ESRGMK 148

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
            I    I +      + F+ K    + G   +   L  +   +     R++   + I ++
Sbjct: 149 DIAFSDITEEFAESFKVFLKKELGHRNGH--VNHCLCWLNRLIYIAVDREVLRANPIEDV 206

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              +K     R ++  +   +++     T      ++      ++     GL  ++  +L
Sbjct: 207 AYERKEAPKLRHISRSELKRMME-----TPLPDPMMELARRTFIFSSL-TGLAYADTRAL 260

Query: 177 TPQNI---MDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
            P++I    + +  +RI+  K D    +PL P   + +  Y          +   P+F  
Sbjct: 261 HPRHIGTTSEGRRYIRIRRAKTDVEAFIPLHPIAGQILDLYNT-------TDDDRPVFPL 313

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                    V    +  +   LG+  + + H  RHSF T  L+ G  + SI  ++GH  +
Sbjct: 314 PV-----RDVLWYEVHGMGVALGMKENLSYHMARHSFGTLTLTAGIPIESIARMMGHTNI 368

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
            +TQ+Y  V  +     M  + ++  P+  ++
Sbjct: 369 DSTQVYAQVTDRKISSDMDRLMERRKPAAGKE 400


>gi|254773716|ref|ZP_05215232.1| prophage integrase [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 384

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 58/308 (18%), Positives = 103/308 (33%), Gaps = 37/308 (12%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  T   Y               + +     + ++S  +++AF+           S   +
Sbjct: 92  SPKTWSGYT-------QHWELRIKPRFGHVPVDEISRGDVQAFVDDLTVGPWAKVS---T 141

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQALTLVDNVLLHTSHETK 150
           L  ++S L    +      +  L +   +       R L  ++  TL             
Sbjct: 142 LRLLRSILDVAHQDGRIHRNPALGVSAGRIPERERHRYLTAQEVQTLATACGDQGD---- 197

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI--RIVPLLPSVRK 208
                   ++ +L   GLR SE + L  ++I      L ++    ++  RIV   P  R 
Sbjct: 198 --------VVTILAYTGLRWSELVGLRVKDIDLVARRLYVRRAAPEVEGRIVIGPPKTRA 249

Query: 209 AILEYY-------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ--LRRYLGLPLS 259
            I                        P      G  L    ++R+       +   L   
Sbjct: 250 GIRTVPLPQVVVDIFKTRISGRAPDEPAVTSPNGAMLRSNNWRRHTHWNKALKKTNLA-P 308

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQTH 318
            T H LRH++A+    +G DLR +Q  +GH   + T  IY+++ S +  D +    DQ H
Sbjct: 309 LTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYS-DELDQVATNLDQLH 367

Query: 319 PSITQKDK 326
            + T   K
Sbjct: 368 ATETHTPK 375


>gi|126697925|ref|YP_001086822.1| integrase [Clostridium difficile 630]
 gi|115249362|emb|CAJ67177.1| Integrase Tn916-like, CTn1-Orf1 [Clostridium difficile]
          Length = 396

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 105/298 (35%), Gaps = 38/298 (12%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           RQ+L  +     + + ++ I  +  ++ + +  +   +    +++      +K+      
Sbjct: 107 RQYL--MNALKNDPLGMRAIDTVKQSDAKEWAIRMSEKGYAYKTIDNYKRSLKASFYMAI 164

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           +     ++        K S+ L     +K  LT      L    E   I ++    + LL
Sbjct: 165 QDDCIRKNPFE----FKLSDVLEDDTEQKVILTPEQEERLLAFMEKDKIYSKYYDEVVLL 220

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVR 207
              GLRISE   LT  +I      L I                    +  R +PL     
Sbjct: 221 LETGLRISEFCGLTT-HIDMQNRILNIDHQLLKDSEIGYYIETPKTKNGKRELPLTERAY 279

Query: 208 KAILEYYDLC---PFDLNLNIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGL 256
           +AI             +       LF    G P        +  G+ ++Y +     L  
Sbjct: 280 QAIQRILKNRGKAQPLIVGGYSNFLFLNREGLPKVAGNYEGMVRGLIKKYNKYHTDKL-- 337

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
             + T H+ RH++ T++ + G +  ++Q ++GH  ++ T   Y +   ++    +  +
Sbjct: 338 -PNITPHSFRHTYCTNMANRGMNPNTLQYLMGHANITMTLGYYAHGTFQSAKAELERL 394


>gi|54027743|ref|YP_121984.1| putative recombinase [Nocardia farcinica IFM 10152]
 gi|54019251|dbj|BAD60620.1| putative recombinase [Nocardia farcinica IFM 10152]
          Length = 353

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 95/277 (34%), Gaps = 38/277 (13%)

Query: 81  QKIGDRSLKRSLSGIKSFLKY---------LKKRKITTESNILNMRNLKKSN----SLPR 127
           +++   +       + S+ ++          +      E  I  +   + S      +P 
Sbjct: 76  RRVSSSTRAARARTVVSYFEFLEIRYKVVLHEMTGRVVECPIDEVNRPRMSVDTMVRIPP 135

Query: 128 ALNEKQALTLVDNVLLHTSHETKW-IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
              E +   L            K+   ARN  +  L    GLR++EA  L   +I  +  
Sbjct: 136 --TEAELEQLFTGWREDLVTCRKFAPSARNYMVARLAADVGLRVNEACMLDLDDIRWELG 193

Query: 187 T---LRIQGKGD------KIRIVPLLPSVRKAILEYYDLCPFDLNLN---IQLPLFRGIR 234
               L ++          + R+VPL+     A+  + +      + +    + PLF   R
Sbjct: 194 RFGKLNVRHGKGAFRSGPRQRLVPLINGADTALTWFVEDVWAQFDADETLPRAPLFPSER 253

Query: 235 GK------PLNPGVFQRYIRQLRRYLGLPL---STTAHTLRHSFATHLLSNGGDLRSIQS 285
            +       +   V +R +        LP      T H LRH  A+ L   G D+ +IQ 
Sbjct: 254 RRAGSSGTRVTRDVIRRALGGAVDR-HLPTWSGRLTPHVLRHYCASQLYRTGVDILAIQE 312

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           +LGH  ++TT  Y +       D +   + +      
Sbjct: 313 LLGHSWITTTMRYVHPYGTRVEDAVTAGHKRAAARWE 349


>gi|317495918|ref|ZP_07954281.1| phage integrase [Gemella moribillum M424]
 gi|316914095|gb|EFV35578.1| phage integrase [Gemella moribillum M424]
          Length = 364

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 98/286 (34%), Gaps = 21/286 (7%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI-----RAFISKRRTQKIGDRSLKR 90
           ++ Y+   +    +      ++  +     +   +I     + FI+    +K    +++R
Sbjct: 76  IEQYKRKVKDTTYYSNTKYFKQHILPFFANIKIKDIKLVVCQKFINDL-AKKFKKSTIQR 134

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLK-KSNSLPRALNEKQALTLVDNVLLHTSHET 149
             + +   L Y  K +I + + +      +          ++ + L  +  V  + S E 
Sbjct: 135 YRTLVNLVLDYAIKLEIISTNYMKYTDIPRAIEKRKDNYYSKNELLEFLRLVKDNFSFEI 194

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK- 208
                    I  +L   G+R  E  +LT +++     TL +      I+    +   +  
Sbjct: 195 -------YCIFRVLAFTGVRRGELCALTWKDVDLKNKTLTVSKNMTFIKGGYRISETKTQ 247

Query: 209 -----AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
                  L+   +            L        L       Y + +   L      + H
Sbjct: 248 ASNRVIYLDDETVNVLKQLRKESTFLPIDTSIFDLTISRICYYSKLIHEKLPNLKKISVH 307

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
             RH+ AT L  +G D++ I + LGH  + TT  +YT++      D
Sbjct: 308 GFRHTHATLLYESGVDIKDISNRLGHSNIKTTLDVYTHLTEDKKKD 353


>gi|310287230|ref|YP_003938488.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum
           S17]
 gi|309251166|gb|ADO52914.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum
           S17]
          Length = 377

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 63/350 (18%), Positives = 114/350 (32%), Gaps = 60/350 (17%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +P   +  L      WL  +   R L   TL +Y       +       +  I    + +
Sbjct: 27  MPSQTTPYLKDWLDRWLDEIVKPR-LRPSTLATYRSVVEALI-------KPAIGGVRLGR 78

Query: 66  LSYTEIR---AFISKRRTQ---KIGDRSLKRSLSGIKSFLK---YLKKRKITTESNILNM 116
           L     R    +I+K           RS   + S  ++  K      +  I   +     
Sbjct: 79  LEPKHFRMMEEYITKGDDTCDPPRRPRSSATAGSAWRTLHKALDDAVREGIIESNPCDRA 138

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
            + +   +  + L   QA  L++             D     +  L Y  G+R  E L L
Sbjct: 139 ESPRVVYTERKILTPAQAGQLINAE----------NDVMWHLMWRLAYETGMRQGERLGL 188

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPS--------VRKAILEYYDLCPFDLNLNIQLP 228
           T   I    + + I  +        +  +         R  + + Y + P        +P
Sbjct: 189 TNSEIQLIDNVICIVVEWQLKVYNNVKDARDIPSSLGARHVMGKAYLVPPKTNAGRRVIP 248

Query: 229 L------------------------FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           L                        F    G PLN  +  R  ++  + +GLP     H+
Sbjct: 249 LPESLAAELGLYIKGTGRVKPDDLVFVQEDGAPLNRMIETRAWKKALQRVGLPGDFVPHS 308

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
            RH+ AT +   G   +  +SI+GH  +S T ++YT+V + +    +  +
Sbjct: 309 ARHTAATAMAQLGMSDKVRESIMGHSDISVTNRVYTHVGTADASKAVNGV 358


>gi|295107192|emb|CBL04735.1| Site-specific recombinase XerC [Gordonibacter pamelaeae 7-10-1-b]
          Length = 427

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 53/310 (17%), Positives = 103/310 (33%), Gaps = 59/310 (19%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           E      +++L    +R+  S+ R +   +  L R    +   +       +  ++    
Sbjct: 118 EAFGAYRLQELDTLTLRSAYSRMRKEGATESRLHRVHQKLSQIMNQAVDDGLVAKNPCSP 177

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +   +       +L   +A  L   +L   +             + L    G+R  E L 
Sbjct: 178 ISIPRPKPKERHSLTVDEAQRLNSIILGLPASAP-------HCAVLLALHTGMRRGEVLG 230

Query: 176 LTPQNIMDDQSTLRI------------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
           LT +++  D+  L +                   R + L   +   + E+      +L  
Sbjct: 231 LTWEHVHFDKRRLYVAQQYACDKVPRDPKSKKSKRWISLDSEIVAYLEEWKRTQRIELEN 290

Query: 224 NI-----------------QLPLFRGIRGKPLNPGVFQRYIR---------------QLR 251
                              + P+   + G   +P +F R+ R               +  
Sbjct: 291 RKRRLDREDTDAIAILQTEKSPVVTNVYGGYYDPNIFGRWFREFCVENGFGEQGRAIRYV 350

Query: 252 RYLGLPL-------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNS 303
              G+P            H LRH+ AT L+SNG D++++Q+ LGH   + T  IY +   
Sbjct: 351 DSRGIPRIKRTGYEGLKFHELRHTQATLLISNGADIKTVQNRLGHSTAALTMDIYAHAIE 410

Query: 304 KNGGDWMMEI 313
           +N  +   EI
Sbjct: 411 QNDREAADEI 420


>gi|109302897|ref|YP_654712.1| Int [Pasteurella phage F108]
 gi|73918061|gb|AAZ93639.1| Int [Pasteurella phage F108]
          Length = 340

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 88/271 (32%), Gaps = 33/271 (12%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKY 101
                  L      K T Q   +     +    S    +     ++ R  + +++ F + 
Sbjct: 88  LLNLCSHLGDPPANKFTTQDFAEYRKKRLAGKFSADPKRPPKQSTVNREHAYLRAVFNEL 147

Query: 102 LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
               K + ++ +  +   K++ +    L   +   L+D      + +          I  
Sbjct: 148 KSLGKWSGDNPLSEISLFKENETELAFLFGDEIRRLIDECDNSRNKDLG-------LITR 200

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           +    G R SEA  L    ++  + T  I  K  K R +P+ P +   + +       D 
Sbjct: 201 ICLATGARWSEAEQLKQAQVIPYKIT-YINTKSGKNRTIPISPELYNMLPQRRGRLFGDA 259

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGD 279
                                            G+  P     H LRH+FA+H + NGG+
Sbjct: 260 ----------------------YEAFENAVDRAGIDLPKGQLTHVLRHTFASHFMMNGGN 297

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           +  ++ ILGH  +  T  Y +    +    +
Sbjct: 298 ILVLKEILGHSTIEMTMKYAHFAPSHLESAV 328


>gi|284172911|ref|YP_003406292.1| integrase [Haloterrigena turkmenica DSM 5511]
 gi|284017671|gb|ADB63619.1| integrase family protein [Haloterrigena turkmenica DSM 5511]
          Length = 380

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 60/381 (15%), Positives = 128/381 (33%), Gaps = 81/381 (21%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P      + +  +++L+      G S+ T++S        L   A + +++  +  + +L
Sbjct: 9   PTPEGTTVHEAVEDYLRYKIKADG-SETTMRS-------PLESFADHCKDERGVGCVGEL 60

Query: 67  SYTEIRAFISKRRT-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI---LNMRN 118
           +  +IR++           + +   +     + +++FL +  + +   ++       M  
Sbjct: 61  ADQDIRSYSEHLYDRVMIDENLAASTANAYFAYVRAFLSWCVREQHLEQNPANTNTAMDP 120

Query: 119 LKK--SNSLPRALNEKQALTL-------VDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
           L +       +  +E     L       VD  L  T         R+ AI+ +L G G R
Sbjct: 121 LPEDDGKRKTQYWSEDDRQQLEAYATKRVDMALEGTIRTDPKAALRDRAIVVMLGGTGAR 180

Query: 170 ISEAL---------SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
            +E            L   ++  +Q  + + GK  +    P   SV   +  +YD     
Sbjct: 181 GAELFADPKDDKRPGLRWSDVDFEQRLIEVYGKSREYEEAPFPDSVHNVLERWYDYLEPP 240

Query: 221 LNLNIQLP--------------------------------------LFRGIRGKP--LNP 240
            +     P                                      L R     P  ++ 
Sbjct: 241 TDEWPVFPTGHYGSKEDALIKKLGEERVNAALKGGGDEGKTAVLDRLHREHEVPPPSISK 300

Query: 241 GVFQRYIRQLRRYLGLPLS-----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
              +R +++L +   +         T H  R +    L +NG   ++ Q  L H  + TT
Sbjct: 301 EGVRRLLKRLTKEANIDPDGDYDYLTLHGARRALGRDLYANGMSEKA-QEALRHKSIETT 359

Query: 296 -QIYTNVNSKNGGDWMMEIYD 315
            + YT++  K+  + + E+ D
Sbjct: 360 HEAYTDLQMKDVSNSIDEVRD 380


>gi|300817091|ref|ZP_07097310.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 107-1]
 gi|300530443|gb|EFK51505.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 107-1]
          Length = 392

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 93/239 (38%), Gaps = 29/239 (12%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + S++  +     ++    S + S F +  +  + +  + + NMR    +      L  +
Sbjct: 168 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 227

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q + L+         + K  D   + ++ +    G R  EA++LT   +   + T  ++ 
Sbjct: 228 QIVELL--------ADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITF-VRT 278

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+   + + I+       F                       FQ      + 
Sbjct: 279 KGKKNRSIPISKELYEEIMALDGFNFF-------------------TDCYFQFLSVMEKT 319

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++   +    + 
Sbjct: 320 SIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHLETALR 378


>gi|260170948|ref|ZP_05757360.1| transposase [Bacteroides sp. D2]
 gi|315919270|ref|ZP_07915510.1| transposase [Bacteroides sp. D2]
 gi|317475129|ref|ZP_07934397.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|313693145|gb|EFS29980.1| transposase [Bacteroides sp. D2]
 gi|316908773|gb|EFV30459.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 410

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 60/315 (19%), Positives = 114/315 (36%), Gaps = 37/315 (11%)

Query: 14  LLKERQNWLQNLEIER----GLSKLTLQSYE---CDTRQFLIFLAFYTEEKITIQTIRQL 66
           LLK  +    N E E+      ++ T   Y       R+FL     Y  E I ++ +   
Sbjct: 109 LLKLFEQ--HNAEFEKKVGHSRAQGTFTRYRTVCNHIREFLPH--TYKREDIPLKELNLT 164

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSL 125
              +   F+  R  +K    ++   +  +K  +   +       +     + + +  +  
Sbjct: 165 FINDFEYFL--RTEKKCRTNTVWGYMIVLKHIVSIARNDGRLPFNPFAGYINSPESVDR- 221

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT---PQNIM 182
              L + +  TL++  + + +HE          +       GL  S+  +LT    Q   
Sbjct: 222 -GYLTQTEIQTLMNAPMKNATHELV------RDLFVFSVFTGLAYSDVKNLTADRLQTFF 274

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           D    +  + K         L  V K I+E Y     D ++               N G 
Sbjct: 275 DGNLWIITRRKKTNTESNIRLLDVPKRIIEKYKGLARDGHVFPVP-----------NNGS 323

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHS-FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             + ++ + R  G  +  T H  RH+   T LLS+G  + ++  +LGH  + TTQIY  +
Sbjct: 324 CNKILKDIGRQCGFKVRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKI 383

Query: 302 NSKNGGDWMMEIYDQ 316
            ++     M  +  +
Sbjct: 384 TAQKISQDMETLSHK 398


>gi|228956754|ref|ZP_04118540.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|228802942|gb|EEM49774.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar pakistani str. T13001]
          Length = 374

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/313 (15%), Positives = 106/313 (33%), Gaps = 38/313 (12%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           +  L +  Q WL+N   +R +   T  +Y       +I +       +    ++ L    
Sbjct: 62  NLTLSEYLQEWLENTAKQR-VRDSTFINYRRAVNSRIIPV-------VGSHKLKDLKPLH 113

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
            + F+     +++  + ++     +K  L+   K ++  ++   ++   +    +    +
Sbjct: 114 GQRFVKSLIDEELSPKYIEYIFIVLKGALEDAVKWELLYKNPFEHVEIPRPRKVVNNTWS 173

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            ++    +           K+ +     +  L    G+R  E L L  +N+      + +
Sbjct: 174 IEETKIFLTY--------AKFDNPIYYHLFLLALNTGMRRGELLGLKWKNVDLIDGKVSV 225

Query: 191 Q---------------GKGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLF 230
                                 R++ +  S+ K +  Y                    +F
Sbjct: 226 TETLIYDELGFRFTEPKTSGSKRLISIDQSLCKELKSYKAKQNEFKLAIGKAYEDNDLVF 285

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
               GKP+ P        +  +   +P     H LRH+ AT LL  G + + +   LGH 
Sbjct: 286 SREDGKPIYPRTLTTVFERFIKTAQVPK-IRFHDLRHTHATLLLKLGINPKVVSERLGHN 344

Query: 291 RLSTT-QIYTNVN 302
            + TT   Y++V 
Sbjct: 345 SIKTTLDTYSHVT 357


>gi|149908526|ref|ZP_01897188.1| DNA integration/recombination/invertion protein [Moritella sp.
           PE36]
 gi|149808360|gb|EDM68297.1| DNA integration/recombination/invertion protein [Moritella sp.
           PE36]
          Length = 236

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 57/249 (22%), Positives = 102/249 (40%), Gaps = 28/249 (11%)

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILNMRNLKKS 122
            +   T   A+  K R +K+  +++    + +++    L +    T  + I  +R LK  
Sbjct: 7   NKFDKTMFAAY-RKLRLEKVSPKTVNNEQTYVRALFNELTRLGEWTKGNPIEGVRMLKHK 65

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            S    L  +Q  +L++   L  SH    +      I  +    G R  EA +L  ++++
Sbjct: 66  QSEMGFLQPEQMTSLLET--LENSHNKDAL-----IITKICLSTGCRWGEAANLRSEHVV 118

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
            +  T  +  KG+K R VP+ P++   +                  LF        N   
Sbjct: 119 KNIVTF-VSTKGNKPRSVPISPALSNTM------------PKRTGKLFPKSC----NDST 161

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
           F+  I+  +    LP     H LRH+FA+H++ NGG    +Q ILGH  +  T  Y++  
Sbjct: 162 FRTAIKNAKIK--LPAGQMTHVLRHTFASHVMINGGIFLVLQRILGHASIVDTMKYSHFA 219

Query: 303 SKNGGDWMM 311
             +  D + 
Sbjct: 220 PDHLEDAVR 228


>gi|320015236|gb|ADV98807.1| putative transposase [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 416

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 86/256 (33%), Gaps = 46/256 (17%)

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +++  +    R++   LS   + +++         S  + +  LKKS S P  L   +  
Sbjct: 139 TRQLKKGRSVRTVNVYLSCFAAMMEFAVANGYIERSPFVGISPLKKSKSEPDPLTRDEYA 198

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L++               +   I  L    G+R  E  +L  ++I   + T+ I     
Sbjct: 199 RLMEV----------APSLQVKNIWKLAVSTGMRHGEICALAWEDIDLKEWTITISRNMA 248

Query: 196 KI------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL------------FR 231
            +            R + L  S  +A+ E   L      + + + L            F 
Sbjct: 249 VVHHFTPPKTESGNRTIKLTNSAIEALKEQMALTKMGKKIKVDVHLREFGKIRKDDCTFV 308

Query: 232 ---------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
                    G  G   +PGVF        +  G+     A+  RH+FA   LS G +   
Sbjct: 309 FSPRLSARNGKGGDWYSPGVFSGTWNFALKKAGI-RHRKAYETRHTFACWALSAGANPNF 367

Query: 283 IQSILGHFRLSTTQIY 298
           + + +GH       +Y
Sbjct: 368 VANQMGHTSSQ--MVY 381


>gi|293373254|ref|ZP_06619614.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292631777|gb|EFF50395.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 411

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 55/302 (18%), Positives = 109/302 (36%), Gaps = 29/302 (9%)

Query: 14  LLKERQNWLQNL--EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           LL   + +++N    +    ++ +L  Y       + FL   ++ K++      L  + I
Sbjct: 113 LLSYFRLFMRNFEKRVGINRTESSLNGYRNSYDHLVRFLQ--SQYKLSDIPFAALDRSFI 170

Query: 72  RAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
             F    RT+  +   ++      +K+ +       I T    +         S  + L 
Sbjct: 171 EKFDLHLRTECHLAPGTIVNLTVRLKTIVGEAIADGIITAFPFVGYE-PTHPQSEQKYLT 229

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            ++   ++   L    H       R+  +       G+  S+   LT +N+   +  +  
Sbjct: 230 TEELNRIMTTPL----HSRTLYHVRDLFLFSC--YTGIPYSDMCMLTNENLSLAEDGIWW 283

Query: 191 ----QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
               + K      +PL+      I +Y D+ P             G      +      Y
Sbjct: 284 IRSSRKKTGVDFEIPLMELPLHIIEKYRDVAPE------------GKLLPMYSNSSLNHY 331

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           ++Q+    G+      H  RH++AT + LS+G  L ++  +LGH R+ TTQ+Y  V    
Sbjct: 332 LKQIAVLCGIERKLVFHVARHTYATEITLSHGVPLETVSKMLGHSRIGTTQLYAKVTDNK 391

Query: 306 GG 307
             
Sbjct: 392 ID 393


>gi|256021081|ref|ZP_05434946.1| bacteriophage integrase [Shigella sp. D9]
 gi|332282306|ref|ZP_08394719.1| site-specific recombinase [Shigella sp. D9]
 gi|332104658|gb|EGJ08004.1| site-specific recombinase [Shigella sp. D9]
          Length = 343

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 93/239 (38%), Gaps = 29/239 (12%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + S++  +     ++    S + S F +  +  + +  + + NMR    +      L  +
Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q + L+         + K  +   + ++ +    G R  EA++LT   +   + T  ++ 
Sbjct: 179 QIVELL--------ADCKCQNPILALVVKICLSTGARWREAVNLTRSQVTKYRITF-VRT 229

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+   + + I+       F                       FQ      + 
Sbjct: 230 KGKKNRSIPISKELYEEIMALDGFNFF-------------------TDCYFQFLSVMEKT 270

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++   +    + 
Sbjct: 271 SIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHLETALR 329


>gi|149197314|ref|ZP_01874366.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149139860|gb|EDM28261.1| phage integrase [Lentisphaera araneosa HTCC2155]
          Length = 248

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 59/270 (21%), Positives = 111/270 (41%), Gaps = 31/270 (11%)

Query: 16  KERQNWLQNLEIERGL---SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
              Q + + +++E  L   +K T+ +Y    R+    +A           + QL   E++
Sbjct: 3   DSFQKYYRAMQLELKLQAKAKSTVDNYLRALRRVNDLIA---------SPLDQLKEEELK 53

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            + S+         ++K     +  F +Y+ KR+       L +  + +  SLP  L++ 
Sbjct: 54  LYFSELVD-TYSWSTVKMDRCALSFFYQYVLKREWK----WLEIVRIPRVKSLPDILSQD 108

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + L ++ ++             R    L  +Y  GLRISE + +   +I  D+  L ++ 
Sbjct: 109 ETLLILSHLEKA----------RYRTCLTAIYSMGLRISEGVRIQTGDICKDRMRLHVRN 158

Query: 193 -KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIR 248
            KG K R+VPL     + + +Y+ +    L L  +              ++ G  Q   +
Sbjct: 159 SKGYKDRLVPLPQVTYQMLRDYWVMHRNPLLLFPRYAGKSRSNSKTTLHMDKGGVQSAFK 218

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
                 GL    + H+LRHS+ATHL+  G 
Sbjct: 219 AALADSGLAKQVSVHSLRHSYATHLVEAGV 248


>gi|149004029|ref|ZP_01828836.1| hypothetical protein CGSSp14BS69_06827 [Streptococcus pneumoniae
           SP14-BS69]
 gi|147758011|gb|EDK65018.1| hypothetical protein CGSSp14BS69_06827 [Streptococcus pneumoniae
           SP14-BS69]
          Length = 377

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 94/268 (35%), Gaps = 34/268 (12%)

Query: 60  IQTIRQLSYTEIRAFISKRR-------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
           +  + +L+Y +I  F    R          +   ++ + +  +K       ++   + + 
Sbjct: 102 VDNVGKLTYEDIYQFREHLRKKVAQNSDNLLSSNTINKIMILLKKIFDIGLRKGYYSTNP 161

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           +  ++ L    +  +    K+    +           +  +     +  +L+  GLR+ E
Sbjct: 162 VKLLKKLPIEKTKMQFWTVKEFQQFLTLF--------EPEEYNIKLLFTVLFFTGLRLGE 213

Query: 173 ALSLTPQNIMDDQSTLRIQG---------------KGDKIRIVPLLPSVRKAILEYYDLC 217
           AL+LT Q+I    +T+ I                      R + L   + + + ++    
Sbjct: 214 ALALTWQDIDFPSNTIHITKSVYVNKGISHINTTKTKAGTRRIVLNKKLSQELQDWQQQQ 273

Query: 218 PFDLNLNIQLPLFRGIRGKP---LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
              L       L   +       +     ++  +++            H  RHS A+ L+
Sbjct: 274 KHLLEQFTSDNLTLQVFQSSPIIITKNAIEKQYKKILERDNTLKMIRIHDFRHSHASLLI 333

Query: 275 SNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           + G D   ++  LGH  ++TT   Y+++
Sbjct: 334 NQGEDYLVVKERLGHASITTTIDTYSHL 361


>gi|89147408|gb|ABD62564.1| integrase [uncultured bacterium]
          Length = 163

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
                      R+       R  P       A  E+     F  N     P    +R   
Sbjct: 45  LHQEDLRNGYGRVYLPYALERKFP------NAAAEWAWQWVFPANNLSVDPRSGVVRRHH 98

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
            +  + QR +++  R +G+    + HTLRHSFATH+L +G D+R+IQ +LGH  + TTQI
Sbjct: 99  TSEDMLQRAVKRAVRQVGISKRVSCHTLRHSFATHMLESGYDIRTIQELLGHRSVETTQI 158

Query: 298 YTNV 301
           YT+V
Sbjct: 159 YTHV 162


>gi|317497317|ref|ZP_07955640.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895386|gb|EFV17545.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 396

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 105/298 (35%), Gaps = 38/298 (12%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           RQ+L  +     + + ++ I  +  ++ + +  +   +    +++      +K+      
Sbjct: 107 RQYL--MNALKNDPLGMRAIDTVKQSDAKEWAIRMSEKGYAYKTIDNYKRSLKASFYMAI 164

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           +     ++      + K S+ L     +K  LT      L    E   I  +    + LL
Sbjct: 165 QDDCIRKNPF----DFKLSDVLEDDTEQKVILTPEQEERLLAFMEKDKIYNKYYDEVVLL 220

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVR 207
              GLRISE   LT  +I      L I                    +  R +PL     
Sbjct: 221 LETGLRISEFCGLTT-HIDMQNRILNIDHQLLKDSEIGYYIETPKTKNGKRELPLTERAY 279

Query: 208 KAILEYYDLC---PFDLNLNIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGL 256
           +AI             +       LF    G P        +  G+ ++Y +     L  
Sbjct: 280 QAIQRILKSRGKAQPLIVGGYSNFLFLNREGLPKVAGNYEGMVRGLIKKYNKYHTDKL-- 337

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
             + T H+ RH++ T++ + G +  ++Q ++GH  ++ T   Y +   ++    +  +
Sbjct: 338 -PNITPHSFRHTYCTNMANKGMNPNTLQYLMGHANITMTLGYYAHGTFQSAKAELERL 394


>gi|153812497|ref|ZP_01965165.1| hypothetical protein RUMOBE_02896 [Ruminococcus obeum ATCC 29174]
 gi|149831422|gb|EDM86510.1| hypothetical protein RUMOBE_02896 [Ruminococcus obeum ATCC 29174]
          Length = 378

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/274 (20%), Positives = 106/274 (38%), Gaps = 31/274 (11%)

Query: 61  QTIRQLSYTEIRAFISKRRTQK------IGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
           Q I  ++  ++ AF +     K      +  ++    LS +K+ L Y   +K      +L
Sbjct: 108 QDIHNITLEQMEAFYNALLMTKTAKGTALAPKTTLDILSVMKAILFYATTKKYMNILPVL 167

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
                     L   L+ +    L   + L+       +  RN  +L  +Y  G+R+ EA 
Sbjct: 168 RFEYRAVPKKL-VVLSGRNQKILSTYLCLN-------LTYRNLGLLICMY-TGIRLGEAC 218

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE--------------YYDLCPFD 220
           +LT ++I   +  + I     +I+           I E                      
Sbjct: 219 ALTWEDISLTEGYIYIHKTMQRIQKEHNGKKTMIIIAEPKTQSSIRTIPLPRQLIQLIKS 278

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
             L +Q  L  G   + + P  +Q + +++ +   +P  T  HTLRH+FAT  +  G D+
Sbjct: 279 SKLPMQGYLLTGSYERYIEPRNYQYHFKKILQQCKIPQ-TNFHTLRHTFATRCVELGFDV 337

Query: 281 RSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           +++  ILGH  ++ T   Y + +       M ++
Sbjct: 338 KTLSEILGHSNINITLNRYVHPSFNLKKQNMNKM 371


>gi|317485379|ref|ZP_07944258.1| phage integrase [Bilophila wadsworthia 3_1_6]
 gi|316923338|gb|EFV44545.1| phage integrase [Bilophila wadsworthia 3_1_6]
          Length = 389

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 93/254 (36%), Gaps = 35/254 (13%)

Query: 79  RTQKIGDRSLK----RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           R   +   ++       L+ I   +++              ++ L  +N   R L   + 
Sbjct: 155 RGNTLSPSTVNFILLDVLNVIGRMIEWGLHPG-----PAPKVKLLPSNNERQRFLTPIEL 209

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+D + + +            A++ +    G+R+ E L +  Q++  +   + + GK 
Sbjct: 210 ERLLDVLEILSCR------VYRIALISM--HTGMRVGEVLRMRGQDVDFENRLIHVDGKM 261

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K R   +  +V   +     + P DL       +F   +G  + P        +    L
Sbjct: 262 GK-RAAFMDDTVINVLQSIVPVRPADL-------VFTTAKGLQIRPNALTHTFTKAVNIL 313

Query: 255 GLPLSTT-------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           GL    T        HTLRH+F + L S    L +I  ++GH  L +TQ Y  ++     
Sbjct: 314 GLNDGITDPRFKVVIHTLRHTFCSWLASQNVPLYTIGKLVGHTSLRSTQRYAKLSPDAKW 373

Query: 308 DWMM---EIYDQTH 318
           D +    +I    H
Sbjct: 374 DALKLIEKIASSAH 387


>gi|227891999|ref|ZP_04009804.1| phage integrase [Lactobacillus salivarius ATCC 11741]
 gi|227866203|gb|EEJ73624.1| phage integrase [Lactobacillus salivarius ATCC 11741]
          Length = 370

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 82/227 (36%), Gaps = 25/227 (11%)

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSL--PRALNEKQALTLVDNVLLHTSHETKWID 153
           K  L+Y    K+  E+ + N+   ++  +       ++++  T +        H      
Sbjct: 143 KKILQYAVTLKLIPENPMNNVIKPREKKTYGSNNYYSKEELKTFLAYSKKEKFHV----- 197

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK----- 208
                +  LL   G+RI E L+L   +I  + S + I                 K     
Sbjct: 198 ---YVLFRLLAYSGMRIGELLALKVADIDFNTSQISITKTISSDADSRFELHKPKTTTGN 254

Query: 209 -------AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
                    +        D   +  +  F G   KP +P     +  ++ +   L    +
Sbjct: 255 RIISVDPDTINLVSTLIKDKKKDDFIFRFYG-CSKPYSPRTVALWKNKIIKKANL-RKIS 312

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGG 307
            H  RH++ + L  +G +++ IQ  LGH ++  T  +YT+++  N  
Sbjct: 313 LHGFRHTYTSLLFESGVNIKKIQKQLGHSKVEMTLNVYTHLSRNNND 359


>gi|268591584|ref|ZP_06125805.1| putative integrase/recombinase y4rB [Providencia rettgeri DSM 1131]
 gi|291312881|gb|EFE53334.1| putative integrase/recombinase y4rB [Providencia rettgeri DSM 1131]
          Length = 322

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 65/282 (23%), Positives = 106/282 (37%), Gaps = 28/282 (9%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR-SLSGIKSFLKY 101
            R F  ++     +         L+   +  + SK R  +    S+    L  +++F+++
Sbjct: 30  LRSFARYVQRANHQGP-------LTLELMTEWASKGRFTEAVPISMAHGRLKYLRTFMRW 82

Query: 102 LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
           L+  +   E    ++   K     P   +E++   L+        H +         +  
Sbjct: 83  LQFSEPEHEVPDGSVCGRKPERGTPHIYSEQEIEDLLAAAKRLGPHNSIR-GLLYETLFG 141

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPF- 219
           LL   GLRISEALSL   ++   +S L I+  K  K R + L PS  KA+ +Y +     
Sbjct: 142 LLASTGLRISEALSLRISDVDLRRSILIIRRTKFGKSRSIVLHPSTSKALHQYLNQRKLT 201

Query: 220 DLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLSTTAHT-----LRHSFA 270
               +     F G+R       L      +  R LRR LG     T H      LRHSF 
Sbjct: 202 RAASDEDAYFFIGLRADVLGKRLGGQQVCQVFRALRRELGWVNRGTHHAPRIHDLRHSFV 261

Query: 271 TH----LLSNGGD----LRSIQSILGHFRLSTTQIYTNVNSK 304
                     G D    + S+ + LGH  ++ T  Y     +
Sbjct: 262 VRRIILWQQQGIDVAHEMLSLSTYLGHASIAETYWYLQAVPE 303


>gi|217968815|ref|YP_002354049.1| integrase [Thauera sp. MZ1T]
 gi|217506142|gb|ACK53153.1| integrase family protein [Thauera sp. MZ1T]
          Length = 310

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 57/291 (19%), Positives = 103/291 (35%), Gaps = 26/291 (8%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
             L + R L      +      +F  F+          +    ++      +I  R++  
Sbjct: 10  DYLALRRRLGFKLRDA-GLCLVKFAAFME--------ARDAPHITTALALEWI--RQSPS 58

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +   +  + L  ++ F ++       TE     +   +   + P   +++    L+ + L
Sbjct: 59  VTPATWAQRLGYVRGFARHHAASDPQTEVPPAGLLPFRPRRARPYLYSDEDIAQLLRSAL 118

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVP 201
                           +L LL   GLR+ EA+ L   ++   +  L I+G K  K R+VP
Sbjct: 119 DLPPAGGLRP-WTYHTLLGLLSVAGLRVGEAIRLMDADVDLQEGLLTIRGTKFGKSRLVP 177

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL----- 256
           +  S  + + +Y       L  +     F   RG  L+ G   R   +L R +GL     
Sbjct: 178 IHSSTLEVLQQYRAHREPFLAGHAASAFFITGRGHHLDIGDVHRTFYRLSRQVGLRGATA 237

Query: 257 PLSTTAHTLRHSFAT----HLLSNGGD----LRSIQSILGHFRLSTTQIYT 299
                 H  RH FA         +G D    L  + + LGH  ++ T  Y 
Sbjct: 238 SHGPRLHDFRHRFAVQTLLRWYRSGEDVERRLPVLSTYLGHAHVADTYWYL 288


>gi|322371873|ref|ZP_08046416.1| integrase family protein [Haladaptatus paucihalophilus DX253]
 gi|320548758|gb|EFW90429.1| integrase family protein [Haladaptatus paucihalophilus DX253]
          Length = 352

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 64/345 (18%), Positives = 130/345 (37%), Gaps = 67/345 (19%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR--QLSYTEIRAFISKR 78
           +LQ+L    G S+ T  +YE   R+F  FL+   +   + +TI   + +  +  A+I   
Sbjct: 18  FLQDLLYH-GKSERTRDAYERVLRRFEGFLSD-PDRNPSRRTIAPGEATQRDCMAWIHTL 75

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R     + ++    S +  F  Y+ +      + +  +   +   S+ +    ++    V
Sbjct: 76  RGDN-AESTIATYASYLHRFYAYMTQVGAFESNPMALVVE-EMHESIDKDPTRREIS--V 131

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR--------- 189
           + +          ++    A++  L   G+R+ E  +L  +++      +R         
Sbjct: 132 EAMREFVGEIGHPLE---RAVVCTLLKTGMRVGEVSNLDLRDVNLADEDVRSAYSLGARP 188

Query: 190 ---------------IQG------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
                          ++G            K  +  IVP+   +R+ ++ +  + P   +
Sbjct: 189 RLDGRPDSIFVGTDAVRGQVVNGEERTASNKRKRDTIVPVDDELRRVLVRWLAIRPD--S 246

Query: 223 LNIQLPLFR---GIRGKPLNPGVFQRYIRQLRRYLGLPL-------STTAHTLRHSFATH 272
            +   PLF    G  G+ L P + +  + +  R  G          + T H  RH F TH
Sbjct: 247 PSPAEPLFVSTSGDWGQRLTPKMIRNVVERHARDAGWHRTGGGAEENVTPHYFRHFFTTH 306

Query: 273 LLSNGGDLRSIQSILGH--FRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L    GD   ++ + G     +  T  YT+    N GD + E+Y+
Sbjct: 307 LRDRTGDRGIVKYLRGDVASDIIDT--YTH----NWGDRVREVYE 345


>gi|125624913|ref|YP_001033396.1| phage integrase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493721|emb|CAL98709.1| phage integrase [Lactococcus lactis subsp. cremoris MG1363]
          Length = 404

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 53/292 (18%), Positives = 117/292 (40%), Gaps = 28/292 (9%)

Query: 33  KLTLQSYECDTRQF-LIFLAFYTEEKITIQTIRQLSYTEIR----AFISKRRTQKIGDRS 87
             T++      + + L  L  Y  EKIT   ++ +     R    A I     +K   + 
Sbjct: 99  ANTIRINSNFLKNYILPALGNYKVEKITTVLLQNIVNDWARNANTAEIVNGNREKGKSKD 158

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLK---KSNSLPRALNEKQALTLVDNVLLH 144
            K  L+ IK  L Y  +  + +++  + + + K   ++    +  N  +    +D +   
Sbjct: 159 YKLLLNIIKRILDYGMQLGVISDNPAIKVFSPKLKTRTVKKIKYFNNDELKRFLDYLD-- 216

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------- 193
            S ++   + +++ +  LL   GLRI EAL+L+  +I    +T+ +              
Sbjct: 217 -SLQSTTANIKSTTLYKLLLATGLRICEALALSWSDIDFVNNTVSVSKTLIQYSNEIQDS 275

Query: 194 ---GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
               +  R+V +       + E+     +         +F   +       + ++++ + 
Sbjct: 276 AKTKESNRLVSVDSETISMLKEWRKHQNYGAISLHDSLVFSYHQKMR-TYELERQHLVRH 334

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNV 301
            +   +P +   H  RH+ A+ L++N  + + IQ  LGH   S T  +Y+++
Sbjct: 335 FKKAKVP-NIGFHGFRHTHASLLMNNDVNPKEIQMRLGHADYSITMNLYSHL 385


>gi|60681325|ref|YP_211469.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
 gi|60492759|emb|CAH07532.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
          Length = 410

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/290 (16%), Positives = 107/290 (36%), Gaps = 25/290 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKR 90
           S+ +   Y         F+      K++   +++L+   I  F    RT+K     ++  
Sbjct: 129 SERSYWKYCTVYNHLSEFIKQRY--KVSDIALKELTPAFITDFELFLRTEKDHCTNTVWS 186

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +  ++  +                  ++ K  +    L +++   L++      S+E  
Sbjct: 187 YMMPLRRIIYMAINNGWLQRDPFYGY-SITKEETKRGFLTKEEITLLINGTFKKKSYELI 245

Query: 151 WIDARNSAILYLLYGCGLRISEALSL---TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
                   +       GL  ++  +L     +   D    ++ + +         L  V 
Sbjct: 246 ------RDLFIFCTFTGLSWTDMANLMKENLEISFDGHLWIKTKRQKTGTESNIRLLEVA 299

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + I+E Y+    D  L + +P +   +            I+ + ++ G+  + T H  RH
Sbjct: 300 RHIIEKYEGMAKDGKL-LPVPCYPNCKNG----------IKVIAKHCGIDKNVTWHQSRH 348

Query: 268 SFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           S+AT   LSN   + ++  +LGH  + TTQIY  + ++     M ++  Q
Sbjct: 349 SYATTVCLSNDVPIETLSKMLGHRSIRTTQIYAKITAEKVSRDMEKLSKQ 398


>gi|260887016|ref|ZP_05898279.1| site-specific recombinase, phage integrase family [Selenomonas
           sputigena ATCC 35185]
 gi|330839204|ref|YP_004413784.1| integrase family protein [Selenomonas sputigena ATCC 35185]
 gi|260863078|gb|EEX77578.1| site-specific recombinase, phage integrase family [Selenomonas
           sputigena ATCC 35185]
 gi|329746968|gb|AEC00325.1| integrase family protein [Selenomonas sputigena ATCC 35185]
          Length = 368

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 53/317 (16%), Positives = 108/317 (34%), Gaps = 42/317 (13%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
             +L        L   TL +Y+    + ++         + I  ++      + A I+  
Sbjct: 63  DEFLAMKRDVDKLEASTLSTYQGFLNRHIL---PQIPPTMKISDVKPALLKHVLAQIA-- 117

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                GDR+ +   + ++S  +  K  ++   + +  +R  K   +    +  +    L+
Sbjct: 118 -----GDRTRQAVYTLLQSIFRTAKFEQLIENNPMEYIRKPKHKTTTAGIVTPEIYHALL 172

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-------- 190
           D +    +            +    +  GLR  E ++L   +  +  +T+R+        
Sbjct: 173 DAIRGSQAEH----------LFKFAWDTGLRRGEIVALRWSDFDEKAATIRVSKARKRAA 222

Query: 191 ------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-----NLNIQLPLFRGIRG--KP 237
                        R V L P+  + +L +       L      L     +FR +R   +P
Sbjct: 223 EEYEGTTKTAYSARTVTLSPAAVQNLLAWRKTLMAILLRQGVPLTKDSYIFRSLRDETQP 282

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQ 296
           +           L++ L LP +   H+ RH+ AT L       + IQ  LGH   S T  
Sbjct: 283 ITLTAVTHLFADLKKRLQLPANLRFHSFRHTHATLLAEQEISAKKIQVRLGHASASFTMD 342

Query: 297 IYTNVNSKNGGDWMMEI 313
            Y +   +       ++
Sbjct: 343 RYVHNTEQMQEGVTEKV 359


>gi|255009533|ref|ZP_05281659.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313147308|ref|ZP_07809501.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313136075|gb|EFR53435.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 372

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 61/317 (19%), Positives = 114/317 (35%), Gaps = 49/317 (15%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L      + L+      +    + F  F+           T  ++     R F+    
Sbjct: 95  DFLAYF---KALADRKNIKWRHVYKHFERFVNGKC-------TFEEVDVDLCRKFMEYLL 144

Query: 80  --------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
                    QK+   S     S  ++ L    + +   E+    +  ++   ++   L++
Sbjct: 145 GAPQSIHTNQKLHINSAAGYWSAFRAVLHTAYRDRKIKENPNGFLDRIESIPTMREHLSQ 204

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTLRI 190
           ++ + L          ET   +             GLR S+   LT Q I       + +
Sbjct: 205 EELIRL---------AETPCEEEVLKRAFLFGCLTGLRKSDIKQLTWQQIQPYTNGKMFV 255

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
             +  K + +   P   +A           L    +  +F G + K L     Q  +++ 
Sbjct: 256 TTRMQKTKQIVHNPISDEA--------YGLLGERCEGLIFDGFKDKML-----QGPLKRW 302

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+    T H  RHSF +  +  G D+  IQ+ LGH  ++TTQIY+ + ++     M
Sbjct: 303 LLAAGITKKITFHCTRHSFGSLHVEMGTDMAVIQAYLGHKNITTTQIYSKMAAQQ----M 358

Query: 311 MEIYDQTHPSITQKDKK 327
            E+ D+    IT K KK
Sbjct: 359 CEVVDK----ITLKRKK 371


>gi|237785808|ref|YP_002906513.1| putative phage-related integrase [Corynebacterium kroppenstedtii
           DSM 44385]
 gi|237758720|gb|ACR17970.1| putative phage-related integrase [Corynebacterium kroppenstedtii
           DSM 44385]
          Length = 361

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/293 (17%), Positives = 97/293 (33%), Gaps = 38/293 (12%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            L   TL      +R   + L  + + KI       L  +EI+A++S      +   S++
Sbjct: 77  HLKPSTLD--RDASRLHGVVLPMWGKRKIG-----TLRKSEIQAWVS---ASPLSGSSIR 126

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
            + + +   L           +    ++   K   +   L   Q   L            
Sbjct: 127 HAHNLLAQILDVAVDDNYLKSNPARGVKLPPKGKPVKVYLTPTQLERL------------ 174

Query: 150 KWIDARNSAILYLLYGC-GLRISEALSLTPQNIMD-------DQSTLRIQGKGDKIRIVP 201
               A + A++  + G  GLR  E + L  +++ +       ++S + I+GK  +     
Sbjct: 175 -AHHAGDKAVVVWVLGTVGLRWGELVGLKVEDVDELHSRLRINRSVIYIKGKPQETLPKT 233

Query: 202 LLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPG-VFQRYIRQLRRYLGLPL- 258
                    L    +             LF    G PL      + +     +       
Sbjct: 234 HERRTVSVSLPVMRMIHEQAAGRLPSAWLFPHTDGGPLKRADGTKGWFAAAVKKAQAEDP 293

Query: 259 ---STTAHTLRHSFATHLLSNGGDLRSIQSILGHFR-LSTTQIYTNVNSKNGG 307
                T H LRH  A  L+S G +++ +Q  LGH   + T   Y ++  ++  
Sbjct: 294 SFPRITPHGLRHVAAGLLVSAGANVKVVQRQLGHASAVLTLDTYADLFEEDLD 346


>gi|146297702|ref|YP_001181473.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145411278|gb|ABP68282.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 327

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 63/331 (19%), Positives = 123/331 (37%), Gaps = 51/331 (15%)

Query: 18  RQNWLQ-NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
            ++WL   L       K TL+      + +   +  +    I    ++ L    ++A  +
Sbjct: 3   VKDWLNTWLWE---YKKQTLR--PSTFQDYESLINNHIVPSIGHYKLKDLRPEHLQALYN 57

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ--A 134
            +    +   ++K     + S L    K  +        +RN+ ++ +LP+A  +K+   
Sbjct: 58  SKHESGLSLSTIKHIHVILHSALDQALKNGLV-------VRNVSEATTLPKAKTKKEIRV 110

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--- 191
           LTL +      + E + +         L    G+R+ E L+L    +   + T+ I+   
Sbjct: 111 LTLEEQKRFVAALEGERLKPA----FLLALASGVRLGELLALKWDCVNLKEGTITIKRSL 166

Query: 192 ---------------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-- 228
                                     IR +P+ P + + + E+      +      L   
Sbjct: 167 RRIKTYDKSLPTKTMLAFQEPKTAAGIRTIPVPPVILEELKEHRKRQLEEKLKAGSLYED 226

Query: 229 ---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
              +F    G P+ P  F R   ++     L      H LRH++AT LL      + +Q 
Sbjct: 227 NNLVFATELGTPIEPRNFLRVFYRIIEKANLD--INFHALRHTYATRLLEANEHPKVVQE 284

Query: 286 ILGHFRLSTT-QIYTNVNSKNGGDWMMEIYD 315
           +LGH  +STT  IY++V  +      M++ +
Sbjct: 285 LLGHNDISTTLNIYSHVMPEIKKAAAMKLNN 315


>gi|238025595|ref|YP_002909827.1| Phage integrase family protein [Burkholderia glumae BGR1]
 gi|237880260|gb|ACR32591.1| Phage integrase family protein [Burkholderia glumae BGR1]
          Length = 779

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 58/350 (16%), Positives = 118/350 (33%), Gaps = 63/350 (18%)

Query: 29  RGL-SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE-IRAFISKRR------- 79
           RG  S  T ++Y  +  + L++      + ++  ++  L   E +  F++  +       
Sbjct: 306 RGARSAQTQRAYRREAERLLLWAIVAKGKPLS--SLNTLDVAEYLEQFLANPQPAERWIG 363

Query: 80  --------------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN--LKKSN 123
                            +  RS   +   + +   +L +++    +    +        +
Sbjct: 364 RGGVERFDPAWRPFAGPLSARSRDTARRILTAMGAWLVRQQYLRVNPFEGLAAAAPVPID 423

Query: 124 SLPRALNEKQALTLV------------DNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
           +  R L   Q   ++            +      +   +    R++ +L L Y  GLR +
Sbjct: 424 TAGRTLTHAQWRYVLQTVWQPERALGAEPDRSDAARADRIRRQRDAFVLLLAYATGLRRA 483

Query: 172 EALSLTPQN--------IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
           E  + T  +         ++D   LR+ GKG + R VP+   +   +          L+L
Sbjct: 484 ELAAATTGDLSRKALDGALEDAYVLRVDGKGRRRREVPMPARLMDLLRAELRARAEPLSL 543

Query: 224 N----------------IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
                               P   G   K +     +R               + H LRH
Sbjct: 544 ETAPADTPLVAHLVTGAALHPNTIGALFKGIFARAAERLAPSYPGAAADLQRASTHWLRH 603

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           +FA H L  G D+R +Q++LGH  L+TT  Y   ++      +   ++  
Sbjct: 604 TFANHGLDAGADIRDMQALLGHASLATTTHYAKGDAARQYQTVDAFFNAA 653


>gi|154496597|ref|ZP_02035293.1| hypothetical protein BACCAP_00889 [Bacteroides capillosus ATCC
           29799]
 gi|150274230|gb|EDN01321.1| hypothetical protein BACCAP_00889 [Bacteroides capillosus ATCC
           29799]
          Length = 377

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/321 (14%), Positives = 102/321 (31%), Gaps = 43/321 (13%)

Query: 18  RQNWLQNLE---IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
              WL+      +E   ++ T+  Y          +  +  + +    +++L+   ++ +
Sbjct: 70  LDQWLEYWMEQVVEPNRAETTIYGYR-------KIIDNHLSDALGDIPVQKLTPRHLQEY 122

Query: 75  ISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            +   R + +   +++R    + + L    ++ I   S    +   +           ++
Sbjct: 123 YAMLMRDKGLSPNTVRRHHDLLSAALHTAVRQDIILRSPTERVEPPRVVPREVGYYGPEE 182

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-- 191
              L                     ++ L    GLR  E   L   ++   Q  + I   
Sbjct: 183 LKKLY----------ALAEGTGLELVVKLAGMLGLRREEICGLQWSSVDFAQRRIHICAA 232

Query: 192 -------------GKGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGI 233
                              R++ +   + + +         +             +    
Sbjct: 233 RTAAGGEIIQKETKNRSSTRVLHMSDELVRLLRRERAGQAENRLALGDKWEDSGLVAVDH 292

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            G PL+P        +  R   LP   T H LRH+FAT   + G  L  I   LGH   +
Sbjct: 293 MGHPLSPNAVSLAFTRFIRRNNLPK-ITLHGLRHTFATVASAQGAPLFDIGKALGHSTPA 351

Query: 294 TT-QIYTNVNSKNGGDWMMEI 313
           TT +IYT++  +N    +  +
Sbjct: 352 TTGRIYTHLLDQNHEATLDRV 372


>gi|295841273|dbj|BAJ07042.1| integrase [uncultured bacterium]
          Length = 278

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 106/299 (35%), Gaps = 63/299 (21%)

Query: 17  ERQNWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           E++  L ++ +E   R  S  T Q+Y    R+F+ F       ++  +        EI  
Sbjct: 2   EKKRLLVSMRVEIRFRHYSLRTEQTYNQWVRRFIFFHNKRHSGEMGEK--------EISL 53

Query: 74  FISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           F++     + +   +  ++LS +    K++ K  +    N++     K+   LP  L + 
Sbjct: 54  FLTHLAVERNVAAATQNQALSALLFLYKHVLKLNLEWLDNVVRA---KRPERLPVELTQA 110

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ- 191
               ++ N            D  N  I  L+YG G+R  E L L   +I  +   + ++ 
Sbjct: 111 GVADILGN-----------TDGVNGLIARLIYGTGMRKMECLRLRVTDIDFEYQQIHVRS 159

Query: 192 GKGDKIRIVPLLPSVRKAI------------------------------------LEYYD 215
           GKG+K RI  L  S+   +                                     E+  
Sbjct: 160 GKGNKDRITLLPVSIIPQLRSQLESTAALHKIDLKEGYGEVELPHALERKYPNAGWEWRW 219

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
              F        P    IR          R I+Q    L +      HTLRH+FATHLL
Sbjct: 220 QYAFPATRRSVDPRTGVIRRHHCYDTNVSRAIKQAVHSLHIQKHVGVHTLRHTFATHLL 278


>gi|158340183|ref|YP_001521353.1| phage integrase family protein [Acaryochloris marina MBIC11017]
 gi|158310424|gb|ABW32039.1| phage integrase family protein [Acaryochloris marina MBIC11017]
          Length = 190

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 73/183 (39%), Gaps = 12/183 (6%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             L   +   L+    L   H  +     + A+L L++  GLR+SEA+SL    +M +  
Sbjct: 15  EYLTLAEVNRLIMAAELRGRHPIR-----DKALLLLMFRHGLRVSEAISLRWDAVMLELK 69

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            + I   KG      PL     +++ +       D        LF G RG  L       
Sbjct: 70  AIGITRLKGSVSGTHPLQADEVESLKDLRAEGYPD------PYLFVGERGGHLKRHAVTS 123

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            I +      L +    H LRHS   HL + G D R IQ  LGH  +  T  YT +N + 
Sbjct: 124 LINRCAELAQLGIKCHPHMLRHSCGYHLANQGLDTRLIQDWLGHRNIQHTVTYTMLNPRR 183

Query: 306 GGD 308
            G+
Sbjct: 184 FGE 186


>gi|319935246|ref|ZP_08009685.1| integrase [Coprobacillus sp. 29_1]
 gi|319809896|gb|EFW06284.1| integrase [Coprobacillus sp. 29_1]
          Length = 422

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 105/298 (35%), Gaps = 38/298 (12%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           RQ+L  +     + + ++ I  +  ++ + +  +   +    +++      +K+      
Sbjct: 133 RQYL--MNALKNDPLGMRAIDTVKQSDAKEWAIRMSEKGYAYKTIDNYKRSLKASFYMAI 190

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           +     ++        K S+ L     +K  LT      L    E   I ++    + LL
Sbjct: 191 QDDCIRKNPFE----FKLSDVLEDDTEQKVILTPEQEERLLAFMEKDKIYSKYYDEVVLL 246

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVR 207
              GLRISE   LT  +I      L I                    +  R +PL     
Sbjct: 247 LETGLRISEFCGLTT-HIDMQNRILNIDHQLLKDSEIGYYIETPKTKNGKRELPLTERAY 305

Query: 208 KAILEYYDLC---PFDLNLNIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGL 256
           +AI             +       LF    G P        +  G+ ++Y +     L  
Sbjct: 306 QAIQRILKSRGKAQPLIVGGYSNFLFLNREGLPKVAGNYEGMVRGLIKKYNKYHTDKL-- 363

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
             + T H+ RH++ T++ + G +  ++Q ++GH  ++ T   Y +   ++    +  +
Sbjct: 364 -PNITPHSFRHTYCTNMANRGMNPNTLQYLMGHANITMTLGYYAHGTFQSAKAELERL 420


>gi|210615554|ref|ZP_03290652.1| hypothetical protein CLONEX_02870 [Clostridium nexile DSM 1787]
 gi|210150221|gb|EEA81230.1| hypothetical protein CLONEX_02870 [Clostridium nexile DSM 1787]
          Length = 396

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 105/298 (35%), Gaps = 38/298 (12%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           RQ+L  +     + + ++ I  +  ++ + +  +   +    +++      +K+      
Sbjct: 107 RQYL--MNALKNDPLGMRAIDTVKQSDAKKWAIRMSEKGYAYKTIDNYKRSLKASFYMAI 164

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           +     ++        K S+ L     +K  LT      L    E   I ++    + LL
Sbjct: 165 QDDCIRKNPFE----FKLSDVLEDDTEQKVILTPEQEKRLLAFMEKDKIYSKYYDEVVLL 220

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVR 207
              GLRISE   LT  +I      L I                    +  R +PL     
Sbjct: 221 LETGLRISEFCGLTT-HIDMQNRILNIDHQLLKDSEMGYYIETPKTKNGKRELPLTERAY 279

Query: 208 KAILEYYDLC---PFDLNLNIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGL 256
           +AI             +       LF    G P        +  G+ ++Y +     L  
Sbjct: 280 QAIQRILKNRGKAQPLIVGGYSNFLFLNREGLPKVAGNYEGMVRGLIKKYNKYHTDKL-- 337

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
             + T H+ RH++ T++ + G +  ++Q ++GH  ++ T   Y +   ++    +  +
Sbjct: 338 -PNITPHSFRHTYCTNMANKGMNPNTLQYLMGHANITMTLGYYAHGTFQSAKAELERL 394


>gi|226325002|ref|ZP_03800520.1| hypothetical protein COPCOM_02794 [Coprococcus comes ATCC 27758]
 gi|240145110|ref|ZP_04743711.1| transposase [Roseburia intestinalis L1-82]
 gi|225206350|gb|EEG88704.1| hypothetical protein COPCOM_02794 [Coprococcus comes ATCC 27758]
 gi|257202783|gb|EEV01068.1| transposase [Roseburia intestinalis L1-82]
          Length = 396

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 105/298 (35%), Gaps = 38/298 (12%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           RQ+L  +     + + ++ I  +  ++ + +  +   +    +++      +K+      
Sbjct: 107 RQYL--MNALKNDPLGMRAIDTVKQSDAKEWAIRMSEKGYAYKTIDNYKRSLKASFYMAI 164

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           +     ++        K S+ L     +K  LT      L    E   I ++    + LL
Sbjct: 165 QDDCIRKNPFE----FKLSDVLEDDTEQKVILTPEQEERLLAFMEKDKIYSKYYDEVVLL 220

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVR 207
              GLRISE   LT  +I      L I                    +  R +PL     
Sbjct: 221 LETGLRISEFCGLTT-HIDMQNKILNIDHQLLKDSEIGYYIETPKTKNGKRELPLTERAY 279

Query: 208 KAILEYYDLC---PFDLNLNIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGL 256
           +AI             +       LF    G P        +  G+ ++Y +     L  
Sbjct: 280 QAIQRILKNRGKAQPLIVGGYSNFLFLNREGLPKVAGNYEGMVRGLIKKYNKYHTDKL-- 337

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
             + T H+ RH++ T++ + G +  ++Q ++GH  ++ T   Y +   ++    +  +
Sbjct: 338 -PNITPHSFRHTYCTNMANRGMNPNTLQYLMGHANITMTLGYYAHGTFQSAKAELERL 394


>gi|149918976|ref|ZP_01907461.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149820129|gb|EDM79548.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 398

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/300 (17%), Positives = 103/300 (34%), Gaps = 42/300 (14%)

Query: 38  SYECDT------RQFLIFLAFYTEEKITIQTIRQLSYTEIRAF----ISKRRTQK--IGD 85
           +Y+         R+    L  +         + ++    I  +    ++           
Sbjct: 83  AYQRTINKPAVIRRKEGILRLHLLPAFGRHRLDKIDERMIDQYKVDRLATLTRTGSPFQP 142

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
           +++ + L  +       KK K+  E     +  LK+  S    L+  +    +     H 
Sbjct: 143 QTVNQHLKVLGRIFTVAKKWKLVREVP--EIVLLKQRKSDFDFLDFDETEAFLTGTAEHL 200

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTP-QNIMDDQSTLRIQ-----------GK 193
                +        + +    GLR+ E ++L   ++I   +  + +             K
Sbjct: 201 PDWHTY--------MVVAVRTGLRVGEMIALRWREDIDLQRGRISVNQSWSVENGFTSTK 252

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            DK R +PL    R A+          L       +F        + G  Q  I ++   
Sbjct: 253 SDKRRELPLTWDARDALEAQRVRVQGKL-------VFPREGAPTHSAGTVQYAIDKITEA 305

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           L +      H LRH+FA+H +  G  +R +Q  LGH  ++TT  Y +++   G + +  +
Sbjct: 306 LEM-RHLHNHVLRHTFASHAVMRGVPMRQVQEWLGHQSITTTMRYAHLSRGYGDELIKRL 364


>gi|71737173|ref|YP_273416.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71557726|gb|AAZ36937.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|320322897|gb|EFW78988.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320329794|gb|EFW85782.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 382

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 61/338 (18%), Positives = 108/338 (31%), Gaps = 74/338 (21%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS-YTEIRAFISKRRTQKIGDRSLKRS 91
             T          F  FL  +    + ++     S     R +     T K+   + ++ 
Sbjct: 54  PNT----GRALYDFFSFLEAHNISWLDVERGEAKSLAAAYRDY--CLTTCKLAPNTTRQR 107

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRN-------------------------LKKSNSLP 126
           L+ I  F +Y  K          +                             +   ++P
Sbjct: 108 LTYICKFYQYALKEGWVKRLPFAHEERTVKSKKTFLEHVDASGVMTMANDVMPRSQKTMP 167

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ---NIMD 183
           + L+  +   L+              +  +  ++ L    GLR  E  +       +   
Sbjct: 168 KFLSMTEIKLLL----------AAAENPHHRMMMRLALHTGLRREEIATFPLAYVFDPDK 217

Query: 184 DQST---LRIQ----------GKGDKIRIVPLLPSVRKAILEYYDLCPFD---LNLNIQL 227
            Q T   LR++           KG K R + L  +    +  Y      +   L+   Q 
Sbjct: 218 AQRTERNLRMRLDPYDGSGMVTKGSKPRTIYLSRAFIAELYRYVAKVRGERVSLSKPPQK 277

Query: 228 PLFRGIRGKPL--NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL-------SNGG 278
            LF    G     +     R I +     G+      H LRH++ATH L       SNG 
Sbjct: 278 ALFLNQFGASYAEDGKSLNRIISETGMRAGI--KVHTHMLRHTYATHTLVSLQRNPSNGL 335

Query: 279 D-LRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           D L  +Q  LGH  + TT +Y ++ ++   + ++  YD
Sbjct: 336 DPLVFLQRQLGHSSIQTTMVYLHLINEMADEAVL-AYD 372


>gi|83955392|ref|ZP_00964023.1| site-specific integrase/recombinase-like [Sulfitobacter sp.
           NAS-14.1]
 gi|83840036|gb|EAP79211.1| site-specific integrase/recombinase-like [Sulfitobacter sp.
           NAS-14.1]
          Length = 353

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/258 (18%), Positives = 99/258 (38%), Gaps = 21/258 (8%)

Query: 59  TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
             + I +L+  +I  + +K R     + ++ R L  +   L+++  +   TE   ++++ 
Sbjct: 91  GKKRISKLTDADITQYAAKHRA-TCANSTVNRHLQMLGRALRHM-GKIYKTEIPDIDLKA 148

Query: 119 L--KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              K+     R L   +   L          E          I+      G RIS    L
Sbjct: 149 AETKEPRERVRELTTDEQTRLF----AALPQEFHP-------IVAFALMTGARISTITGL 197

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
             +++      +  + KGD++ I P+   +  A+L          +         G   +
Sbjct: 198 LWRDVDMPNREISFRLKGDELMIFPINGELA-ALLSALPKSNVMESRRYVFTRVDGHSAE 256

Query: 237 PL----NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
            +    + GVF    R+     G+  +   H LRH+FAT +L    ++  +  +LGH  +
Sbjct: 257 RIQIVASGGVFGTVWRKALLDAGVE-NFRFHDLRHTFATRMLRKTQNISLVSKLLGHTNI 315

Query: 293 STTQIYTNVNSKNGGDWM 310
            TT  Y +V + +  + +
Sbjct: 316 ETTSRYAHVLTSDLRNAL 333


>gi|260438910|ref|ZP_05792726.1| DNA integration/recombination/inversion protein [Butyrivibrio
           crossotus DSM 2876]
 gi|292808561|gb|EFF67766.1| DNA integration/recombination/inversion protein [Butyrivibrio
           crossotus DSM 2876]
          Length = 310

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 86/213 (40%), Gaps = 21/213 (9%)

Query: 103 KKRKITTESNILN--MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
               + +        ++  K     P+ LN+ +   L++++ L       W        +
Sbjct: 91  VDEGLISRDPTRKAIIKGKKPREKKPKFLNQFELHKLIEDLHLGPKVSWDW-------FI 143

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY-- 213
            L+   G+R SEAL+LTP++      TL I    D       LP     SVRK  L++  
Sbjct: 144 LLVSKTGMRFSEALALTPKDFDFSHQTLSISKTWDYKGKGGFLPTKNQSSVRKIQLDWQT 203

Query: 214 -YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                    +L    P+F       +        + +  +  G+P+  + H LRH+ A+ 
Sbjct: 204 VMQFAELTKSLPNDEPIFIKRSI--VYNSTLNGILERHCKNAGIPI-ISIHGLRHTHASL 260

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           LL  G  + S+   LGH  ++TTQ  Y ++  +
Sbjct: 261 LLFAGVSIASVARRLGHASMTTTQKTYLHIIHE 293


>gi|228960186|ref|ZP_04121843.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|228799454|gb|EEM46414.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar pakistani str. T13001]
          Length = 376

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 100/292 (34%), Gaps = 37/292 (12%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             TL  Y+   R            +   + +  +    +  F  K   + +  + +    
Sbjct: 80  PSTLYQYKRILRS-------RVMPEFGEKRLSDIKPLTVHNFHQKLLKEGLTTKYISSVD 132

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +K  L    + ++   +     +  K       +   ++A+  ++            I
Sbjct: 133 VMLKQILDKGVELEMINSNPAKKAKRPKVKKKAQASWTVEEAMKFMEY---------AKI 183

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---------------GKGDKI 197
                    L    G+RI E L+L   +I  +  T+ +Q                     
Sbjct: 184 QGSYYIAFVLALHTGMRIGEVLALQWDDINFENKTIHVQRTLTLVDGKYELGETKTEASN 243

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RI+P+   +   +LEY          N    L      K ++P   +  ++ L   + +P
Sbjct: 244 RIIPMTEELMGELLEYQSHK----KENSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVP 299

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
                H +R +F T L+ +G + + +  +LGH  +STT  IYT+V  +   +
Sbjct: 300 Y-IRFHDIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDVYEERQIE 350


>gi|314937138|ref|ZP_07844485.1| toxin-antitoxin system, toxin component, PIN family [Staphylococcus
           hominis subsp. hominis C80]
 gi|313655757|gb|EFS19502.1| toxin-antitoxin system, toxin component, PIN family [Staphylococcus
           hominis subsp. hominis C80]
          Length = 378

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 79/234 (33%), Gaps = 30/234 (12%)

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
            +Y    KI  E+     +  K++ +        + LT   +  L    E    D    A
Sbjct: 140 FEYAVMLKIIHENPFKYTKLPKRTRN-----KSNEHLTYYSSDELKQFLELIKDDLMYYA 194

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPL 202
           +  LL   G+R  E ++LT ++I     T+ I                      IR++ +
Sbjct: 195 MFRLLGFTGMRRGELMALTWEDINFKNKTISIDKTVTIGLNSKEIIQPPKTHSSIRVISI 254

Query: 203 LPSVRKAILEY------YDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLG 255
                  +  +        L       N    LF  +R  K L      + + ++ +   
Sbjct: 255 DDRTISILKNWRVEQRKLCLMHGHNTSNKSQCLFTNLRTNKRLQVQHPNKAMDKICKKYN 314

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGD 308
                  H  RH+  + L   G  ++ +Q  LGH  ++TT  +Y ++  K    
Sbjct: 315 F-KKIKIHGFRHTHCSLLFEAGLSIQEVQDRLGHGDINTTMDVYAHITEKQREK 367


>gi|237718824|ref|ZP_04549305.1| site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229451956|gb|EEO57747.1| site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 393

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 87/253 (34%), Gaps = 20/253 (7%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL-------KKRKITTESNILN 115
           ++ +     + FI+  +T    D   + S +  + F+ Y         +  +  ++  L 
Sbjct: 138 LKDVDKEFCKGFITFLKTCTYNDGKKQLSTTTCRMFVNYFGSSLAKAIRDGLIEQNPFLL 197

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +   +K     + + E++ LT+ +  +    +     +    A L+  +  GLR S+  +
Sbjct: 198 LEAKEKPQ---KRVAEREFLTIEE--IKKVMNTPCRYELVKKAFLFSCF-TGLRYSDMKT 251

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
           L           +     G    I  +    +  +               +  +      
Sbjct: 252 LNWS-------EIHKAADGKTEYIDHIQVKTKDRVTIPLSEETKKWMPKREEGIDNIFHN 304

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             +     +  +++     G+    T H  RH+ AT  L+ G  +  +  ILGH  +  T
Sbjct: 305 LTITSTTVEVVLKEWMEVAGISKHITYHCSRHTAATMFLTLGASIYVVSKILGHKSIKMT 364

Query: 296 QIYTNVNSKNGGD 308
           +IY  +  K   +
Sbjct: 365 EIYAKIVDKKKLE 377


>gi|171741671|ref|ZP_02917478.1| hypothetical protein BIFDEN_00757 [Bifidobacterium dentium ATCC
           27678]
 gi|283455017|ref|YP_003359581.1| phage integrase [Bifidobacterium dentium Bd1]
 gi|171277285|gb|EDT44946.1| hypothetical protein BIFDEN_00757 [Bifidobacterium dentium ATCC
           27678]
 gi|283101651|gb|ADB08757.1| phage integrase [Bifidobacterium dentium Bd1]
          Length = 367

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 106/287 (36%), Gaps = 40/287 (13%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSF 98
           Y  D          +       + I  + ++EI+ ++S+   ++    ++ R+   +K  
Sbjct: 83  YYADLE---CSWRVHVCNAWGNREIASIRHSEIQTWVSELAKKRSATITI-RAHGVLKGV 138

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           L    +      +     +  +K       L   Q + L                    A
Sbjct: 139 LDLAVRDGSIRRNPADGCQLPRKQRKERTYLTPAQVIDL------------AHAAGTYQA 186

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------GKGDKI--------RIVPLLP 204
           ++  L  CGLR  EA +L  +++    + LR++      GK            R VP+  
Sbjct: 187 LILTLGFCGLRWGEAAALRVKHVDTQNNRLRVRLSWVRSGKKHFEGAPKTWEVRDVPVPD 246

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR--RYLGLPLSTTA 262
            V  AI E  +          +  +F    G  L     + +    R  R  G+P + T 
Sbjct: 247 QVMSAIKEQCE------GKGPEDLVFTAPSGGHLREQSAKNHGWYARALRDSGVP-TLTC 299

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
           H LRH+ A+  +S+G +++++Q +LGH   + T   Y ++   +  D
Sbjct: 300 HDLRHTAASIAISSGANVKAVQRMLGHKNAAMTLDTYADLFDTDLDD 346


>gi|187926512|ref|YP_001892857.1| integrase family protein [Ralstonia pickettii 12J]
 gi|187928816|ref|YP_001899303.1| integrase family protein [Ralstonia pickettii 12J]
 gi|241589911|ref|YP_002979936.1| integrase family protein [Ralstonia pickettii 12D]
 gi|241666000|ref|YP_002984359.1| integrase family protein [Ralstonia pickettii 12D]
 gi|187725706|gb|ACD26871.1| integrase family protein [Ralstonia pickettii 12J]
 gi|187728266|gb|ACD29430.1| integrase family protein [Ralstonia pickettii 12J]
 gi|240868027|gb|ACS65687.1| integrase family protein [Ralstonia pickettii 12D]
 gi|240868623|gb|ACS66282.1| integrase family protein [Ralstonia pickettii 12D]
          Length = 397

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 117/336 (34%), Gaps = 55/336 (16%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK--------RRTQK-- 82
             T+ +Y  +  + +++      + ++  ++          F++           ++K  
Sbjct: 60  PGTVATYRKEAERLILWAILQHGKPLS--SLTHEDLLLYERFLADPQPAWRWVMASRKKL 117

Query: 83  -------------IGDRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSLPR 127
                        +   S++ +++ + +   +L +      + +     R+ K +  + R
Sbjct: 118 ARSSPDWRPFAGPLSPTSVRHAMTILNALFAWLVQAGYLAGNPLSLARRRSAKTAPRVTR 177

Query: 128 ALNEK--QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--- 182
            L       +      L   +   +   AR   +  +LY  GLR++E  S     +    
Sbjct: 178 YLTHAHWDIVKATIETLPVATERDRLHAARCRWLFSVLYLAGLRLAEIASTRMGAVFSRR 237

Query: 183 ----DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGI--R 234
                ++  + + GKG K R+VP    +   +  Y  +C    +  I    PL   +   
Sbjct: 238 DAAGVERWWIEVHGKGGKTRLVPATDELIAELARYRRICGLPPSPQIGETRPLLLPVIGP 297

Query: 235 GKPLNPGVFQRYIRQLRR---------------YLGLPLSTTAHTLRHSFATHLLSNGGD 279
            KPL+       ++++ +                  +  S ++H LRH+  +H+     D
Sbjct: 298 EKPLSRAAIHLIVKEVFKLAADRVRAQGPEFGAQADVLASASSHWLRHTAGSHMSDQQVD 357

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           LR ++   GH  L+TT +Y +             + 
Sbjct: 358 LRFVRDNFGHASLATTSVYLHAEDDARHQATQASHR 393


>gi|154491554|ref|ZP_02031180.1| hypothetical protein PARMER_01165 [Parabacteroides merdae ATCC
           43184]
 gi|154088355|gb|EDN87400.1| hypothetical protein PARMER_01165 [Parabacteroides merdae ATCC
           43184]
          Length = 411

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 53/290 (18%), Positives = 111/290 (38%), Gaps = 22/290 (7%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87
           +  + +T++ YE   R     +     ++     + +++   +R+F    +T+K     +
Sbjct: 130 KDYALITVRRYESCKRYLAELIKLKYGKE--DLPLSEVNGELVRSFEFYLKTEKECQQNT 187

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           + R +  +K         +  T+   + ++  +K   +   L   + LT+      H   
Sbjct: 188 VIRYMKCLKKITNLALANEWITKDPFIGIKFHEKEV-IREFLTMDELLTIY-----HKEF 241

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRIVPLLP-- 204
             + I      +       GL   +   L P++I++D    L I+    K + +  +P  
Sbjct: 242 SLERITIV-RDVFTFAAFTGLAFIDVQQLAPEHIVEDSNGNLWIRKPRQKTKNMCNIPLL 300

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            +   IL  Y   P     N  LP+    +           Y++++     +  + T H 
Sbjct: 301 DIPLEILRKYAEHPACQKKNRLLPVPCNQKM--------NSYLKEIADLCMINKTLTTHV 352

Query: 265 LRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            RHS+AT   L+NG  + ++  +LGH  +  TQ Y  V   +    M  +
Sbjct: 353 ARHSYATSVCLANGVSIENVAKMLGHSNIKMTQHYARVLDSSILRDMNNV 402


>gi|240949217|ref|ZP_04753561.1| phage integrase [Actinobacillus minor NM305]
 gi|240296333|gb|EER46977.1| phage integrase [Actinobacillus minor NM305]
          Length = 309

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 106/283 (37%), Gaps = 34/283 (12%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T++ Y                 K+ +  + +++Y ++    ++   ++    +       
Sbjct: 31  TMKKYRSTL-----HWIETLAPKLRVGDLSRITYQKLLNDYAQTHERQ----TTMDFHHQ 81

Query: 95  IKSFLKYLKKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           +K  +       +             +  K      + LN+ +   L++++ L       
Sbjct: 82  LKGAILDAVDEGLLDTDPTRKAIIKGKAPKSKK--IKYLNQFELQALLNSLELEQKINWD 139

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----S 205
           W        + L+   G+R SEAL++TP++      TL++    +        P     S
Sbjct: 140 W-------FILLVAKTGMRFSEALAITPEDFDFAHQTLQVNKTWNYKEKGGFSPTKNRSS 192

Query: 206 VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           +RK  L++  +  F     +L    P+F       +        + ++ R   +  + + 
Sbjct: 193 IRKIQLDWQTVIQFSQLIKDLPPDKPIFP--CDTAIYNSTINGMLARICRKAKVS-TISI 249

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI-YTNVNSK 304
           H LRH+ A+ LL  G  + S+   LGH  ++TTQ  Y ++  +
Sbjct: 250 HGLRHTHASLLLFAGVSIASVARRLGHSSMTTTQHTYLHIIQE 292


>gi|160888482|ref|ZP_02069485.1| hypothetical protein BACUNI_00899 [Bacteroides uniformis ATCC 8492]
 gi|298374442|ref|ZP_06984400.1| integrase [Bacteroides sp. 3_1_19]
 gi|156862159|gb|EDO55590.1| hypothetical protein BACUNI_00899 [Bacteroides uniformis ATCC 8492]
 gi|298268810|gb|EFI10465.1| integrase [Bacteroides sp. 3_1_19]
          Length = 403

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 59/332 (17%), Positives = 124/332 (37%), Gaps = 38/332 (11%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYEC------DTRQFLIFLAFYTEE 56
            N++PE +      ER+     L + R     +  +Y        + RQF+        +
Sbjct: 97  ANSVPEYLLQAGEVERER----LRV-RSKEINSTSTYRQSKTTQLNLRQFI---ESRGMK 148

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
            I    I +      + F+ K    + G   +   L  +   +     R++   + I ++
Sbjct: 149 DIAFSDITEEFAESFKVFLKKELGHRNGH--VNHCLCWLNRLIYIAVDREVLRANPIEDV 206

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              +K     R ++  +   +++     T      ++      ++     GL  ++  +L
Sbjct: 207 AYERKEAPKLRHISRSELKRMME-----TPLPDPMMELARRTFIFSSL-TGLAYADTRAL 260

Query: 177 TPQNI---MDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
            P++I    + +  +RI+  K D    +PL P   + +  Y          +   P+F  
Sbjct: 261 HPRHIGTTSEGRRYIRIRRAKTDVEAFIPLHPIAGQILDLYNT-------TDDDRPVFPL 313

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                    V    +  +   LG+  + + H  RHSF T  L+ G  + SI  I+GH  +
Sbjct: 314 PV-----RDVLWYEVHGMGVALGMKENLSYHMARHSFGTLTLTAGIPIESIARIMGHTNI 368

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
            +TQ+Y  V  +     M  + ++  P+  ++
Sbjct: 369 DSTQVYAQVTDRKISSDMDRLMERRKPAAGKE 400


>gi|313158018|gb|EFR57424.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 405

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 64/300 (21%), Positives = 115/300 (38%), Gaps = 34/300 (11%)

Query: 14  LLKERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           LL   +++ ++L    G   SK T   Y    +    FL      +++   + +L  + I
Sbjct: 109 LLSTFRSFTEDLHGRIGVDRSKNTWYRYLATMKHLQAFLTAKY--RVSDIALAELEQSFI 166

Query: 72  RAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--NLKKSNSLPRA 128
             F    +T++ +   S+ R L  + + +K      I   +   + R        +    
Sbjct: 167 EQFHVYLKTERALKLTSICRYLDCLINVVKIAFNDGIMPRNPFASYRYNEPAPERA---F 223

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP----QNIMDD 184
           LNE++ LTL      H +  TK         L+  +  G+  ++  +L      Q+   D
Sbjct: 224 LNEEEILTL-----QHAAFRTKKQRMIRDLFLFSCF-TGICYADLKTLAWKQFEQDTHGD 277

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
                 + K D   +V LLP+    +  Y D   +  +    L                 
Sbjct: 278 WWVTGNRCKTDTQYVVKLLPAALSILERYRDGTDYVFSFMPHL-------------NTVD 324

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           R ++++    G+    T H  RH++AT   L NG  L ++  +LGH R++TTQ Y  V  
Sbjct: 325 RSLKRIAVLCGIEKKLTFHVARHTYATTICLMNGVSLETLSKMLGHKRITTTQTYAKVTQ 384


>gi|312891622|ref|ZP_07751134.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311295904|gb|EFQ73061.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 286

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 54/288 (18%), Positives = 108/288 (37%), Gaps = 24/288 (8%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSL 88
           G +  TL  +E   +     LA+  +  ++   I+++ +  I ++    R  +K G+ S 
Sbjct: 8   GYASGTLTCFETTLKHTQGLLAWKYQ--LSDIDIKKIDHDFITSYEFYLRSEKKCGNNSA 65

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
            + +   K  ++        T    +N + N+K  + +   LN+++   + D     T  
Sbjct: 66  VKYIKNFKKIIRVCLASGWVTHDPFVNYKENMKIVDRV--FLNKEKLQAMAD----KTFS 119

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLT---PQNIMDDQSTLRIQGKGDKIRIVPLLP 204
             +    R+  +       GL  +    L        +D +  +  + K         L 
Sbjct: 120 TQRLNQVRDIFLFSCF--TGLAYANVYKLKRTEIIQGIDGEMWIYTKRKKTDTPSHIPLL 177

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
               ++L  Y   P   N    LP+    +           Y++++    G+    T H 
Sbjct: 178 PSALSLLNKYTDHPACSNSGKALPVSTNQKM--------NAYLKEIADVCGINKELTYHI 229

Query: 265 LRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             H+FAT + LSNG  + ++  +LGH  + TTQ Y  +       +M 
Sbjct: 230 ACHTFATTVTLSNGVPIETVSKMLGHSNIKTTQHYAKILDLKVSQYMA 277


>gi|153933244|ref|YP_001385294.1| phage integrase family site specific recombinase [Clostridium
           botulinum A str. ATCC 19397]
 gi|152929288|gb|ABS34788.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 19397]
          Length = 387

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/288 (17%), Positives = 105/288 (36%), Gaps = 43/288 (14%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +  L   +++ + ++          +K     +++F  Y        ++     + +   
Sbjct: 108 LADLKTIQVQRYYNELYNNGKTSNVIKNLNKLLRTFFNYAVNEGYILKNPCSGSKII--- 164

Query: 123 NSLP--RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
             +P  + +  K+     D  +     + +    R   ++ L  G GLR  E L+L   +
Sbjct: 165 --IPGGKDMEVKEIEIFTDKEIKALKKQLE--GNRLKCLILLALGSGLRQGELLALRWDD 220

Query: 181 IMDDQSTLRIQGKGDKI------------------------RIVPLLPSVRKAILEYYDL 216
           I    + +++     ++                        R+VP+   +  A+ E+  L
Sbjct: 221 IDFKTNEIKVTKSIKRVKIIENDGTGKRKTIEQSPKSIKSNRVVPIPSKLINALEEHKAL 280

Query: 217 CPFDLNLNIQLPL-----FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
              ++       +     F    GKP+         R++     +P     H LRH++AT
Sbjct: 281 QEKEIKEAGCSYVDKNLVFATKLGKPIVVKNLFESYRRILIRAKIP-HKKFHALRHTYAT 339

Query: 272 HLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKN---GGDWMMEIYD 315
            L      L+++Q +LGH  +S T   YT+V  K      D + +++D
Sbjct: 340 KLFEKDVQLKTVQKLLGHKNISITADTYTHVMPKEKISAADKLNDLFD 387


>gi|149913599|ref|ZP_01902132.1| Integrase [Roseobacter sp. AzwK-3b]
 gi|149812719|gb|EDM72548.1| Integrase [Roseobacter sp. AzwK-3b]
          Length = 196

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 17/192 (8%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + LNE Q   ++          ++    R+  I+   +  GLR  E  +L   ++ D+  
Sbjct: 13  QTLNEAQLRRVIQYC------RSRRHPTRDETIVLFSFYAGLRAKEIAALKRGDVFDEAG 66

Query: 187 TLR-------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
            +R       +Q KG K R V L   +R+A+ EY          +   PLF   +G   +
Sbjct: 67  AVREQFILSAVQSKGGKTRTVYLNQRLRRALAEYAAGLNL---SDPNRPLFESQKGGHFS 123

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                +    + R +GL    ++H+ R ++ T L + G  +R +  + GH  +STTQ Y 
Sbjct: 124 ANTMCQLFLDIYRAVGL-KDASSHSGRRTYITRLANKGVGVRLLAELAGHSHISTTQRYI 182

Query: 300 NVNSKNGGDWMM 311
           +VNS+   + + 
Sbjct: 183 DVNSEQLSEAVE 194


>gi|300788914|ref|YP_003769205.1| integrase family protein [Amycolatopsis mediterranei U32]
 gi|299798428|gb|ADJ48803.1| integrase family protein [Amycolatopsis mediterranei U32]
          Length = 545

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 65/356 (18%), Positives = 117/356 (32%), Gaps = 56/356 (15%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLI-FLAFYTEEKITIQTIRQLSYTEIRAF-- 74
              +L     +R +S+   +SYE   R +L   LA    +++ +  +  +    +     
Sbjct: 131 FDEFLA--RKKRNVSRNMYRSYESHVRLYLRPHLAKVRRDRLRVGHLDAMFEAIVERNEQ 188

Query: 75  ISKRRTQK-------------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           I++ R                +G  SL R    +++ L+    + + T +    +     
Sbjct: 189 IAEYRASGDPRKIEAVKWQRPVGPTSLHRIKETLRAILRPAVDQGLLTHNVAKLVELPSA 248

Query: 122 SNSLPRALNEKQALTLVDNV-----------LLHTSHETKWIDARNSAILYLLYGCGLRI 170
               P+    ++                    L  +     ++ R  A+ +L+   GLR 
Sbjct: 249 VRPKPKLWTPERIAKWRRTGEVPYPVMVWTGDLTGAFLDFVVNHRLYALFHLIAHTGLRR 308

Query: 171 SEALSLTPQNIMDDQSTLRI---------------QGKGDKIRIVPLLPSVRKAILEYYD 215
            E       +   D ++L +                       IV L P+    +  +  
Sbjct: 309 GEGCGQRRSDTYLDAASLEVANQIVQYGWETGQSKPKTPSSEGIVALDPNTVLVLRAHLA 368

Query: 216 LCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
                             LF    G PL+P        +L +  GLP   T H LRH  A
Sbjct: 369 RQDETKARLGDDWVENDLLFTEPDGNPLHPADVADEFARLIKLAGLP-PITLHGLRHGAA 427

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIY-----DQTHPS 320
           T  L  G D++ IQ +L H  +  T  +YTNV  +   D   ++         HP+
Sbjct: 428 TLALGAGVDMKVIQHMLRHSSIKVTMDLYTNVAEEVAADAARKLAGAIPRKALHPA 483


>gi|294647344|ref|ZP_06724937.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294809035|ref|ZP_06767757.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|292637303|gb|EFF55728.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294443760|gb|EFG12505.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 368

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 88/251 (35%), Gaps = 32/251 (12%)

Query: 71  IRAFISKRRTQKIGDRSLKR-----SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
            R ++   +  K  +RS+         S  +  LK   + K   E+    +  ++  +  
Sbjct: 139 FREYLLNVKQLKHSNRSISLNSASGYYSTFRGLLKIAYRDKWFRENINDYLDKIEPQDVK 198

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--- 182
              L   +   L           T        A        GLRIS+ L+L  ++     
Sbjct: 199 KEYLTLDEVKQL---------AATPCDIPVLKAASLFACLTGLRISDILNLQWEDFTIAP 249

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           D    LRI+ +  +           +A L                 +F+      L   +
Sbjct: 250 DQGYCLRIRTQKTQT----------EATLPISYEAYELCGTPGTGKVFKD-----LKRSM 294

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               ++   +  G+  S T H  RHS+A   +S G D+ ++  +L H  +STTQIY ++ 
Sbjct: 295 INYPLKNWLKKAGITKSITFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLV 354

Query: 303 SKNGGDWMMEI 313
           +    +   +I
Sbjct: 355 NSKKRETANKI 365


>gi|265767465|ref|ZP_06095131.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263252770|gb|EEZ24282.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 271

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 104/276 (37%), Gaps = 22/276 (7%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG--DRSLKRSLSGIKSFLK 100
             +F  FL             + ++   I  F+   +++ +G   +S+ +     K  ++
Sbjct: 8   LSRFKDFLKEQYPLYECNIKPKFITKDMIVQFVDYLQSRSVGEGAKSIYQRF---KKVIR 64

Query: 101 YLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           Y  +  +  +     +        L +  L+ ++  +L++    + +           A 
Sbjct: 65  YAIEHDVILKDPCKEVICKVDDPMLRKDVLSLEEIQSLINCHYENENP------MVRRAF 118

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRI--QGKGDKIRIVPLLPSVRKAILEYYDLC 217
           ++ LY  GLR  +   LT +N+      L+              ++  +   +L      
Sbjct: 119 IFCLYF-GLRFCDVKDLTYKNVDYSNKLLKFEQNKTKGHSSASGVVIPLNDGLLSIIGEA 177

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
           P + N ++ +                 + +R+  +  G+    + H  RHSFA ++L+NG
Sbjct: 178 PANGNKDVLIFDLPTYESC-------SKSLRRWVKRAGIDKHISWHCARHSFAVNILNNG 230

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            ++++I  +LGH  L  T+ YT    K   + +  +
Sbjct: 231 ANIKTIAGLLGHSGLKHTKKYTRAVDKLKEEAINSL 266


>gi|223932876|ref|ZP_03624872.1| integrase family protein [Streptococcus suis 89/1591]
 gi|223898457|gb|EEF64822.1| integrase family protein [Streptococcus suis 89/1591]
          Length = 390

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 90/241 (37%), Gaps = 23/241 (9%)

Query: 96  KSFLKYLKKRKITTESNILNMRNL----KKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           K  L+Y    ++   +    +       K +    +  N++Q    +D   L      K+
Sbjct: 150 KRILQYGVVMQVLPYNPAREVILPRNAKKATRKKVKHFNDEQLKQFLDY--LDNLDPAKY 207

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK------------GDKIRI 199
            +     +   L   G RI+E L+L   +I  + +T+ I                  IR 
Sbjct: 208 RNIYEVTLYKFLLATGCRINEVLALHWSDIDLNNATVSITKTLNRYGSINSPKSNASIRD 267

Query: 200 VPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           + +       + EY      +       +  +F                +    R +GLP
Sbjct: 268 IDIDSQTVTMMKEYRRRQIQEAWTLGRSETVVFSDFIHDYPEDKTLGNRLTTRLRNIGLP 327

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQ 316
            +   H  RH+ A+ LL++G   + +Q  LGH R+S T  IY++++ +N  + +   Y++
Sbjct: 328 -NIGFHGFRHTHASLLLNSGIPYKELQHRLGHSRISMTMDIYSHLSKENAKNAVA-FYEK 385

Query: 317 T 317
            
Sbjct: 386 A 386


>gi|23098689|ref|NP_692155.1| hypothetical protein OB1234 [Oceanobacillus iheyensis HTE831]
 gi|22776916|dbj|BAC13190.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 378

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/281 (17%), Positives = 96/281 (34%), Gaps = 35/281 (12%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK-SFLKYL 102
           R +LI      +     + I  ++  EI  F   +  +      +++    +  SF + +
Sbjct: 91  RDYLIKKHLIEDNPFAEKAISDITTEEIDYFYHYKLGKGYSTSYIRKMHQMLHLSFAQAV 150

Query: 103 KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
           K RK  + + ++N    +         ++ Q    ++   L           R   +  L
Sbjct: 151 KWRK-ISYNPVVNTTPPRVQTKQVSIWSKDQVKQFLETSNLE----------RLYILFLL 199

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQ----------------GKGDKIRIVPLLPSV 206
               G+R  E L L   +I  ++  + I                       R++P+   +
Sbjct: 200 AIYTGMRKGELLGLKWSDINMEKECIHIHRNLCYIQNQGYFFTTPKTVRSTRVIPISSLI 259

Query: 207 RKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
              +    +    +  L          +     GK  +P    R   +  +   +P    
Sbjct: 260 SDQLQCIKEKQQCEKELAGPSYEDNDLVICTALGKVQDPRNVTRVFERCIKNANVPK-IR 318

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
            H LRH+ A+ L+S G D+  + S +GH    TT  IY +V
Sbjct: 319 FHDLRHTHASILISEGVDIVKVSSRMGHTSPKTTLDIYAHV 359


>gi|158317079|ref|YP_001509587.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158112484|gb|ABW14681.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 422

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 64/330 (19%), Positives = 117/330 (35%), Gaps = 67/330 (20%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI----------------- 75
             T  +YE   R +L+         +  + + +L+  ++R FI                 
Sbjct: 102 PNTYVTYEKAVRIYLV-------PGLGKKRLNRLTGADVRQFIRRTESTCRCCARGVDKA 154

Query: 76  ---SKRRTQKI--------GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
               +RR   +          R ++   + +++ L+   + ++   +    ++       
Sbjct: 155 RPEEERRCCAVGRCCKRLPSKRQVQVVHAVLRNALQAAVREELIRRNVAKLVQVSTPRYG 214

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           + R L  +QA  L+D               R  A+L L    G+R  E L L   +I  +
Sbjct: 215 VDRGLTVEQAHQLLDA----------AAGDRLYALLVLALFLGMRRGELLGLQWSDIDSE 264

Query: 185 QSTLRIQGK---------------GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
           + TL ++                  D  R +PLL  V  A+ E+  L   +        +
Sbjct: 265 RETLTVRHTLLRVGGELRLCPPKTEDSERTLPLLGLVADALAEHRKLQDAERAAAGDAWV 324

Query: 230 -----FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
                F    G P+ P   +R+   LRR +GL      H LRH+  T LL  G     ++
Sbjct: 325 QTGHVFTTKIGTPIEPDNLRRFWLPLRRAVGLD-GVVFHGLRHTCVTLLLDLGVPPHIVR 383

Query: 285 SILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
            I GH  +  T  IY + +       + ++
Sbjct: 384 DIAGHSAIEVTMTIYAHASMGEKRRALGKL 413


>gi|260590923|ref|ZP_05856381.1| integrase [Prevotella veroralis F0319]
 gi|260536788|gb|EEX19405.1| integrase [Prevotella veroralis F0319]
          Length = 409

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 101/281 (35%), Gaps = 26/281 (9%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSF 98
               ++F+ +     + K++     QL+   I  F           + +     + +K+ 
Sbjct: 141 RIHLQKFIQW-----KYKVSDLAFSQLTENFINEFRQYFLGECGFQESTFYNVATHLKTV 195

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
            +   +  +         +  K  N LP+AL+ +     +D +      + +        
Sbjct: 196 CRLAYREGLADVLLFDKAKISKGDNKLPKALDREA----LDKLKALRFDDLEEEMETARD 251

Query: 159 ILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           I       G    + + L   +++ DD   L ++    K  ++  +  + +AI       
Sbjct: 252 IFLFACYTGAAYCDLMELKKSHLVRDDDGNLWLKFNRQKTGVLCRIKLLPEAIR--LMEK 309

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSN 276
                    LP         +    +Q  ++ LR   G+    T HT RH+FAT + L  
Sbjct: 310 LHSGERETLLPY--------IKYKNYQTCLKALRLRAGISFPFTTHTARHTFATLITLEQ 361

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           G  + ++  +LGH  +S T+ Y  V  +     + E +D+ 
Sbjct: 362 GVPIETVSKMLGHSNISMTERYAKVTPQ----KLFEEFDRF 398


>gi|220905498|ref|YP_002480810.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869797|gb|ACL50132.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 340

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 55/285 (19%), Positives = 109/285 (38%), Gaps = 47/285 (16%)

Query: 39  YECDTRQ-FLIFLAFYTEEKITIQTI-----------------RQLSYTEIRAFISKRRT 80
           Y  D  Q +L FL    +    I T+                  Q+S+T+I    ++   
Sbjct: 63  YLDDLGQCYLDFLKIKDKTTSWIGTLKYLLNEHFLPVLCHSPVDQISFTDILKVAARFAD 122

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +     +  R +  +    ++  + ++TT   + + +  ++        N    +  +  
Sbjct: 123 K--SAATQNRYMDSLHVIFRFGIRHELTTNDPMAHWQKKREPQR-----NMLLTIKDLAK 175

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLR--ISEALSLTPQNIMDDQSTLRIQGKG--DK 196
           +        KW       I+ + +  G R   SE  SL  Q++  D + +R++G      
Sbjct: 176 IYAAAPDHLKW-------IIEVEWALGTRPGKSELFSLCWQDVDFDNNFIRVRGTKTKGS 228

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            RI+PL P  +  +L+  D+      + +     RGI+          R  +       +
Sbjct: 229 DRIIPLTPEFKARLLDKRDVAQSPYIIEVNG---RGIQHCR-------RAFKTALEKAKI 278

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTN 300
                 + +RH FA+ +L+NGGDL+++  +LGH     T   Y +
Sbjct: 279 DYPVRLYDIRHLFASTMLANGGDLKAVSKLLGHSSTRMTADTYYH 323


>gi|156138683|dbj|BAF75918.1| integron integrase [uncultured bacterium]
          Length = 160

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 66/160 (41%), Gaps = 37/160 (23%)

Query: 178 PQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILE------------------------ 212
            +++  D  T+ ++ GKG K R + L  S+  ++ E                        
Sbjct: 1   VKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPD 60

Query: 213 ------------YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
                       +     F  + +   P    +R   +    F R  ++     G+    
Sbjct: 61  ALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFLRAFKRAVEQAGITKPA 120

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           T HTLRHSFAT LL +G D+R++Q +LGH  +STT IYT+
Sbjct: 121 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 160


>gi|119952620|ref|YP_950401.1| phage integrase family protein [Arthrobacter aurescens TC1]
 gi|119951750|gb|ABM10659.1| phage integrase family domain protein [Arthrobacter aurescens TC1]
          Length = 326

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/297 (16%), Positives = 99/297 (33%), Gaps = 38/297 (12%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S  T+++Y+         L  + +  I    I +  Y E   +I     + I  +S+   
Sbjct: 34  SPGTIRTYQR-------ILDLHIQNTIGHIPIDEFGYREDMRWIKGLSAEGIAPKSIHNM 86

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNEKQALTLVDNVLLHTSHET 149
              + + +   +     + +    +       +      L   +   L++ +        
Sbjct: 87  HGLLSAAMTTAELLGYVSANPCRRVPLPTVERAGDEGMFLTHAEFGLLIECM-------- 138

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVR 207
                    ++  L   G R  EA +L   +I    +  T RI     +           
Sbjct: 139 ---HEPYKTLVQFLVMTGARFGEATALRVADIDLRSTPPTARINKAWKRDAQSGYYIGPT 195

Query: 208 KAILEYYDLCPFDLNLNIQLPL----------FRGIRGKPLNPGVFQRYIRQ----LRRY 253
           K       +      +N+ +PL          F   +G  ++   F ++         R 
Sbjct: 196 KTGAGKRTIGLNPALVNLLVPLVASRPGSELLFTTAQGHRVSHKPFWQHHWVPTVLAARA 255

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
            GL  +   H LRH+ A+ L+ +G   L +I   LGH  + TT Q+Y ++  +   D
Sbjct: 256 RGLTKTPRIHDLRHTHASWLIQDGVLSLFAISRRLGHASVRTTEQVYGHLMPQALQD 312


>gi|125974940|ref|YP_001038850.1| phage integrase [Clostridium thermocellum ATCC 27405]
 gi|125715165|gb|ABN53657.1| phage integrase [Clostridium thermocellum ATCC 27405]
          Length = 370

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 53/305 (17%), Positives = 105/305 (34%), Gaps = 40/305 (13%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            ++  T   Y   T       A + +  I    + +L    I++F S    + +   ++ 
Sbjct: 79  NVAPST---YRRYTE-----FAAHIKTHIGGIMMPKLKPAHIQSFYSSLLEKNLSKSTVL 130

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           +    +   LK+    +I   +    +   +      R  + + A   +D          
Sbjct: 131 KIHRMLHLALKHAVNWQIIISNPTDAVTPPRPDKVEMRVWDVETAKKFLD---------- 180

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---------------GKG 194
              +      + L    G+R  E   L  +NI   +  L ++                  
Sbjct: 181 DIAETPIYIPVLLALQTGMRAGEICGLKWENIDLPRGFLMVKYALQRINGVLTLKEPKTA 240

Query: 195 DKIRIVPLLPSVRKAILEYYDLCP-----FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
             +R + L+    +A+ E+               N Q  +     G+P +P    +   +
Sbjct: 241 KSMRTIALMDYTVQALKEHKRKQNKTKLLMGSAYNDQDFVCAWDDGRPYDPHYLGQKFTK 300

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
           L + LG P     H LRH+ AT LL  G + + +   LGH ++S T   Y++V      +
Sbjct: 301 LIKLLGYPK-IRFHDLRHTHATMLLQQGINPKIVSERLGHSQISVTLDTYSHVLPNIQKE 359

Query: 309 WMMEI 313
            + +I
Sbjct: 360 AVSKI 364


>gi|317504298|ref|ZP_07962286.1| integrase [Prevotella salivae DSM 15606]
 gi|315664592|gb|EFV04271.1| integrase [Prevotella salivae DSM 15606]
          Length = 382

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 59/294 (20%), Positives = 110/294 (37%), Gaps = 26/294 (8%)

Query: 14  LLKERQNWLQNLEIE--RGLSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTE 70
            L     ++ ++  +  + L+K T   Y+   + F  FL A Y  + I +  +      +
Sbjct: 109 FLPVFDKYIDSITQQVGKTLTKGTFYKYKVVRQNFQDFLQAKYHRKDIGLTELTSAVVQD 168

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
              +++      + + + K  L  +K+ + Y + R +       N   L         L 
Sbjct: 169 FELYLTS-VVGGVHNTTTK-KLRNLKTVVNYARNRSLIMHDPFAN-HKLHYELVDRGYLT 225

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQST 187
           E++ L ++         E      +N  I       GL   +  +LT   I+   D Q  
Sbjct: 226 EEEVLRIMKKHFEIERLEL----VKNIFIFSCF--TGLAYIDVYNLTYDKIVTVEDRQWL 279

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           +  + K      V LL      I +YYD+               G     ++      Y+
Sbjct: 280 ITKRYKTSVDENVMLLDIPLAIIRKYYDINRKG-----------GKVFPMMSNQRINSYL 328

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +++    G+  + T H  RH+FAT  +S G  + S+  +LGH  +  TQIY  +
Sbjct: 329 KEIADLCGIKKNLTFHMARHTFATMSISKGVPMESVSKMLGHTNIRITQIYARM 382


>gi|256851408|ref|ZP_05556797.1| Lj965 prophage integrase [Lactobacillus jensenii 27-2-CHN]
 gi|260660829|ref|ZP_05861744.1| Lj965 prophage integrase [Lactobacillus jensenii 115-3-CHN]
 gi|282933142|ref|ZP_06338529.1| prophage integrase [Lactobacillus jensenii 208-1]
 gi|256616470|gb|EEU21658.1| Lj965 prophage integrase [Lactobacillus jensenii 27-2-CHN]
 gi|260548551|gb|EEX24526.1| Lj965 prophage integrase [Lactobacillus jensenii 115-3-CHN]
 gi|281302646|gb|EFA94861.1| prophage integrase [Lactobacillus jensenii 208-1]
          Length = 375

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 57/298 (19%), Positives = 112/298 (37%), Gaps = 41/298 (13%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           +  T  +Y    + F                + ++S  +++ +  K  T+ +        
Sbjct: 92  ANKTAINYRVHIKPFF-----------GNAYMDKISVRDVQLWADKLATKLVK---FNDP 137

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           +  ++SF +Y  +    + + + ++    K++  PR   E    +  +  L       K 
Sbjct: 138 IFILRSFYEYAIRMNYVSINPVGSIIMPVKTSR-PRRNVEDNVYSRKELELFL--QVAKE 194

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------------GD 195
            + R      LL   GLR SEAL+LT  +I      + +                     
Sbjct: 195 YNLRAYTYFKLLASTGLRKSEALALTWSDIDFINGVIDVNKTLAVGLDNKVQVQPPKSKS 254

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            IR VP+  ++   + EY +         +   +F    GK L+     +++  +     
Sbjct: 255 SIRQVPISANLANVLNEYKNSEKI-----LSAKVFHTYTGKYLSLSKPMKWLEAIYNKAP 309

Query: 256 LP-LSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
                 T H  RH+FAT L+       +++Q +LGH  +  T  IYT++N+KN  + +
Sbjct: 310 KDLKHITVHGFRHTFATLLISETNVKPKTVQMLLGHSNIQMTLDIYTHINNKNKKEAV 367


>gi|254295225|ref|YP_003061248.1| integrase family protein [Hirschia baltica ATCC 49814]
 gi|254043756|gb|ACT60551.1| integrase family protein [Hirschia baltica ATCC 49814]
          Length = 402

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 55/285 (19%), Positives = 98/285 (34%), Gaps = 33/285 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRT------QKIGDR----------SLKRSLS 93
              +    +    +++L+ T I  F+SK         +K   R          +  R+  
Sbjct: 127 FKRHISPHLGKVKLKELNTTHISNFMSKVANPDKIIVEKTKPRGKAVVSGGKPTANRAHD 186

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            + + L +  K  +  ++   N+   +      R L E +   L   +    S  T    
Sbjct: 187 ILSAMLNHAVKAGLLDKNPAKNVAKFRTEKKE-RFLTEVEIQRLGQELRQAGSDGTNT-- 243

Query: 154 ARNSAI--LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
               AI  L +L   G R SE LSL  + I   +S   +    + ++ + L   V   + 
Sbjct: 244 ---YAIEALKVLMFTGARKSEILSLRWEYIDWQRSLANLPDSKNDMKSIVLPSVVISIL- 299

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
                     N      +F    G     G  Q+   ++R    L      H LRH+FA+
Sbjct: 300 ------NNLPNKGTNGWVFPSNDGNTHFTG-LQKIWNRIRTNANL-RDVRIHDLRHTFAS 351

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
              + G  L  +   L H   +TTQ Y ++        +  I ++
Sbjct: 352 VGAAEGKSLYILGKALTHANPATTQRYAHLADDPLRHAVEAISNK 396


>gi|314997718|ref|ZP_07862634.1| site-specific tyrosine recombinase XerS [Enterococcus faecium
           TX0133a01]
 gi|313588249|gb|EFR67094.1| site-specific tyrosine recombinase XerS [Enterococcus faecium
           TX0133a01]
          Length = 364

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 60/344 (17%), Positives = 135/344 (39%), Gaps = 51/344 (14%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFIS 76
            ++++Q+   ++  S  T   Y  + + F  +L +       +I +IRQL+  ++  + S
Sbjct: 24  IKDFVQD-REDKDQSPRTTLEYLKNYKLFYEWLLSESIVPDTSITSIRQLTAYDLNLYKS 82

Query: 77  KRRTQ--------------------KIGDRSLKRSLSGIKSFLKY-------LKKRKITT 109
             + +                     +   ++ R+++ +K   KY          +    
Sbjct: 83  HLKRRTKENVKKETTKTKLKDNNNLGLSTSTINRNITALKVLFKYLSKSSNNPLGKPYLE 142

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVD----NVLLHTSHETK------------WID 153
            + +  +  +    +L    N  +    +D    N L + ++E K               
Sbjct: 143 NNPMDQVATITDKTTLAARANAIEKKLFLDEDTQNYLDYIANEYKKTLSKRALIYYQRDV 202

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            R+ AI  L+ G GLR+SE +++  +++  +++ + +  KG+K   V +     + +  Y
Sbjct: 203 ERDLAINALILGSGLRLSEVVNINLEDLSLEKNNVVVTRKGNKRDAVNIAAFAMEYLANY 262

Query: 214 YDLCPFDLNL-NIQLPLFRGIRG---KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
             +      +   +  LF  I     K ++    +R + +  +  G  +  + H LRH+ 
Sbjct: 263 LAIRKERYKVTENEKALFLAIYQGEAKRISGIAIERMVAKYSK--GFRVQVSPHKLRHTL 320

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           AT L      L      LGH   +TT +YT++++    D +  +
Sbjct: 321 ATRLYQQTNSLVLTAQQLGHTSTNTTTLYTHIDNAATIDALNAL 364


>gi|312111963|ref|YP_003990279.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|311217064|gb|ADP75668.1| integrase family protein [Geobacillus sp. Y4.1MC1]
          Length = 384

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/290 (16%), Positives = 102/290 (35%), Gaps = 38/290 (13%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           + I +++  +I +F   +         +++  + +        K  +   + + N +  K
Sbjct: 107 KKINEITTFDIDSFYVDKLDNGYSGAYIRQMHNLLNQAFDQAVKWSLVKVNPVKNAKPPK 166

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
             +         +    + N++ ++S E  ++         L    G+R  E L L   +
Sbjct: 167 VKSEEKITWTVDEVNRFL-NLIKNSSMEIPYL---------LAIFTGMRRGEVLGLKWDD 216

Query: 181 IMDDQSTLRIQ----------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL- 223
           +  +   +RI+                      R + +   V   + ++     F     
Sbjct: 217 VDFENKKIRIKRSLCFVSGKGLIFKEPKTKKSKRQISISQHVVNILKKHKQKQEFQKEKL 276

Query: 224 ----NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
                    +     GKPL+P    R   +L     +P   + H LRH+ AT L+  G +
Sbjct: 277 GTQYQDNNLIVCTDDGKPLDPRNLLRQFYRLIEEANVPR-ISFHDLRHTHATILMQQGEN 335

Query: 280 LRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
            + +   LGH R+  T  +Y++V+     D + E   +   +   K  +N
Sbjct: 336 PKVVSERLGHSRVGITLDLYSHVS-----DDLQEQAAEKFENALLKQSQN 380


>gi|224026709|ref|ZP_03645075.1| hypothetical protein BACCOPRO_03466 [Bacteroides coprophilus DSM
           18228]
 gi|224019945|gb|EEF77943.1| hypothetical protein BACCOPRO_03466 [Bacteroides coprophilus DSM
           18228]
          Length = 319

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 60/315 (19%), Positives = 114/315 (36%), Gaps = 37/315 (11%)

Query: 14  LLKERQNWLQNLEIER----GLSKLTLQSYE---CDTRQFLIFLAFYTEEKITIQTIRQL 66
           LLK  +    N E E+      ++ T   Y       R+FL     Y  E I ++ +   
Sbjct: 27  LLKLFEQ--HNAEFEKKVGHSRAQGTFTRYRTVCNHIREFLPH--SYKREDIPLKELNLT 82

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSL 125
              +   F+  R  +K    ++   +  +K  +   +       +     + + +  +  
Sbjct: 83  FINDFEYFL--RTEKKCRTNTVWGYMIVLKHIVSIARNDGRLPFNPFAGYINSPESVDR- 139

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT---PQNIM 182
              L   +  TL+D  + + +HE          +       GL  S+  +LT    Q   
Sbjct: 140 -GYLTRTEIQTLMDAPMKNATHELV------RDLFVFSVFTGLAYSDVKNLTADRLQTFF 192

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           D    +  + K         L  V K I+E Y     D ++               + G 
Sbjct: 193 DGNLWIITRRKKTNTESNIRLLDVPKRIIEKYKGLARDGHVFPVP-----------SNGS 241

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHS-FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             + ++++ R  G  +  T H  RH+   T LLS+G  + ++  +LGH  + TTQIY  +
Sbjct: 242 CNKILKEIGRQCGFKVRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKI 301

Query: 302 NSKNGGDWMMEIYDQ 316
            ++     M  +  +
Sbjct: 302 TAQKISQDMETLSHK 316


>gi|199599691|ref|ZP_03213060.1| integrase [Lactobacillus rhamnosus HN001]
 gi|199589415|gb|EDY97552.1| integrase [Lactobacillus rhamnosus HN001]
          Length = 360

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/310 (18%), Positives = 116/310 (37%), Gaps = 34/310 (10%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           +  +  L +  + W+ +L  +  ++++T   YE            + ++      +R L+
Sbjct: 56  QAGAITLSEYFERWI-HLYKKNSVTEVTFIKYENTL--------SHIKQLFGGVLLRDLT 106

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLP 126
            T  +  +     Q    R++      I++ L      +I         + + +  ++  
Sbjct: 107 RTLYQERL-NIFAQNHAPRTVAAFHKQIRAALLDAVDERIIHLDPTRKAIISGRPISATK 165

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           RAL+ ++   L+  +    + +          I+Y+    G+R +E L LT  +I     
Sbjct: 166 RALDYQEWRQLIQGLDTSNTEQ---------MIIYIAAVTGMRYAEVLGLTKSDIDLTGG 216

Query: 187 TLRIQGKGDKIRIVPLLPSV-----------RKAILEYYDLCPFDLNLNIQLPLFRGIRG 235
            + I    D         +              +I++             Q P+F     
Sbjct: 217 EISINKTWDYKYHTGFKKTKNTSSVRAVVLDTASIMKLAKFLKLHAPETPQTPIFVSNGH 276

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            P++     + + +  + LGLP   T H LRH+ A+ LL  G  + S+   LGH  ++TT
Sbjct: 277 SPVSAE-INKILTKKLKSLGLPR-ITFHGLRHTHASILLYQGVSVLSVSKRLGHSNITTT 334

Query: 296 Q-IYTNVNSK 304
           Q  Y +V  +
Sbjct: 335 QATYLHVIKE 344


>gi|154492472|ref|ZP_02032098.1| hypothetical protein PARMER_02106 [Parabacteroides merdae ATCC
           43184]
 gi|154087697|gb|EDN86742.1| hypothetical protein PARMER_02106 [Parabacteroides merdae ATCC
           43184]
          Length = 406

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 57/275 (20%), Positives = 105/275 (38%), Gaps = 39/275 (14%)

Query: 62  TIRQLSYTEIRAFISKRRT--------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI 113
           T  ++     R F+             QK+   S     S  ++ L    + K   E+  
Sbjct: 161 TFEEVDVDLCRKFMEYLLNAPQSIHTNQKLHINSAAGYWSAFRAVLHTAYRDKKIKENPN 220

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
             +  ++   ++   L++++ + L +             D    A L+     GLR S+ 
Sbjct: 221 GFLDRIECIPTMREHLSQEELIRLAETPCEE--------DVLKRAFLFACL-TGLRKSDI 271

Query: 174 LSLTPQNIMDD-QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
             LT Q I       + +  +  K + +   P   +A           L    +  +F G
Sbjct: 272 RQLTWQQIQPYTNGKMFVTTRMQKTKQIVHNPISDEA--------YGLLGERHEGLIFEG 323

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
            + K L     Q  +++     G+    T H  RHSF +  +  G D+  IQ+ +GH  +
Sbjct: 324 FKDKML-----QGPLKRWLLAAGITKKITFHCTRHSFGSLHVEMGTDMAVIQAYMGHKNI 378

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
           +TTQIY+ + ++     M E+ D+    IT K K+
Sbjct: 379 TTTQIYSKMAAQQ----MCEVVDK----ITLKRKE 405


>gi|330962790|gb|EGH63050.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 404

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 99/275 (36%), Gaps = 36/275 (13%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           E I  Q +  ++  ++ +  +   T      ++ R +  I   L      +    S +  
Sbjct: 128 ESIMSQRLDTITGRDLESLRTTWLTAGNKPSTVNRKMGTISGVLSRAVDWEYLPSSPLDK 187

Query: 116 MRNLK-------------KSNSLPRALNEKQALTLVDNVLLHTSHET---------KWID 153
           ++ LK             +  +L  AL  ++    ++    +   +          K + 
Sbjct: 188 IKPLKVDTKGQVRYLSKEEKKNLRNALEVREHRACLERDSANQWRKDRGKVPLPDLKELA 247

Query: 154 ARNSA--ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRK 208
             +    ++ +    G+R  E  SLT   +     T+ + G   K  + R +P+     +
Sbjct: 248 FTDHLKPMVLVSLNTGMRRGELFSLTWPMVNFQSKTITVCGDTAKTSETRHIPMNAEAFQ 307

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            +  +             + +F G+ G  +  G  +    +L +   + +    H +RH 
Sbjct: 308 TLKSW------KEQSADSVFVFPGLEGGRM--GDVKSAWLRLLKDAHI-VGFRWHDMRHD 358

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           FA+ L+  G  L +++ +LGH  +  T  Y ++  
Sbjct: 359 FASRLVMAGVPLNTVRDLLGHTDIKMTLRYAHLAP 393


>gi|223369860|gb|ACM88798.1| integrase [uncultured bacterium]
          Length = 163

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/111 (36%), Positives = 53/111 (47%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            G GD      L    R A  E+     F        P     R   L+    QR +++ 
Sbjct: 52  NGYGDVYLPDALSRKYRGANREFVWQFLFPSKSISTDPRSGARRRHHLSEDSLQRAVKKA 111

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                +    + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 112 LIKSSINKRGSCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|254459215|ref|ZP_05072637.1| phage integrase [Campylobacterales bacterium GD 1]
 gi|207084108|gb|EDZ61398.1| phage integrase [Campylobacterales bacterium GD 1]
          Length = 347

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 108/292 (36%), Gaps = 34/292 (11%)

Query: 37  QSYECDTRQ--FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           ++Y     Q  +      + +     + I ++  +EI  + SK   +K+  +SL   L+ 
Sbjct: 69  EAYRRPLSQKDYKFIYERHIKPIFGKRIIDEIKPSEIATWQSKLL-KKLSTKSLTMILAV 127

Query: 95  IKSFLKYLKKRKITTESNILNMRNLK---KSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
                      ++   + +  ++  K    +  LP    + +   L+ +           
Sbjct: 128 FNVMFNDALADELIARNPMSLIKKPKNISVNEILP--FKQDEIFKLLGH----------- 174

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK-------IRIVPLLP 204
           I  R  A+  + +  G+R  E ++L   +I  + + ++++    +        +      
Sbjct: 175 IQERMRAVFAIGFFTGMRTGELVALKWSDIDFENNIIKVRRAKRQNVESLPKTKSSIRDI 234

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN--PGVFQRYIRQLRRYLGLPLSTTA 262
            +   +L Y         L+    +F  +  +P      + + Y R +   + +      
Sbjct: 235 DIIDILLPYLQN-HLKFKLDDSEYMFNSLHKRPFTCFHSISRTYWRPIFEKIDIAYR-NP 292

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT----QIYTNVNSKNGGDWM 310
           + +RH+FA+ ++SNG D+  +  +LGH   + T      Y     K  G ++
Sbjct: 293 YQMRHTFASMMISNGEDILWVSKMLGHTNSAITLTMYARYIENKDKKRGAFL 344


>gi|119774770|ref|YP_927510.1| phage integrase family site specific recombinase [Shewanella
           amazonensis SB2B]
 gi|119767270|gb|ABL99840.1| site-specific recombinase, phage integrase family [Shewanella
           amazonensis SB2B]
          Length = 304

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 55/292 (18%), Positives = 101/292 (34%), Gaps = 61/292 (20%)

Query: 21  WLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +LQ +  E   RG S  T ++Y    + F+ F       ++      Q    +   FI+ 
Sbjct: 7   FLQGIREEMRMRGYSISTGKTYLYWIKAFIRFHHKRHPVEMG-----QAEVAQFLTFIAN 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +R   +   + K +L+ +         +++ +    L      K    P  L   +   +
Sbjct: 62  QR--NVAINTQKTALNALVYLYHKHLHQELGS----LGFHYSSKQRFQPVVLTADEVKRI 115

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDK 196
           ++            ++ R+  I+ +LYG GLRISE L L  Q++  +  +L ++ GKG K
Sbjct: 116 LNC-----------LEGRSRLIVEILYGSGLRISECLRLRVQDVDLEHLSLTVRDGKGRK 164

Query: 197 IRIVPLLPSVRKAILEY-----------------------------------YDLCPFDL 221
            R   L      A+  Y                                     +  F  
Sbjct: 165 DRKTLLSQHCATALQSYITCATALQQKDNLQGLGPSLPYALGRKYPNAFRKSIWMFIFPS 224

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
           +     P+   +    L+  V ++ +       G+    T HT RHSF  + 
Sbjct: 225 HAICHHPITGVLCRHHLHQSVVRKALAVAVAKSGVNKRVTCHTFRHSFIKYF 276


>gi|240143351|ref|ZP_04741952.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
 gi|257204724|gb|EEV03009.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
          Length = 306

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 54/299 (18%), Positives = 103/299 (34%), Gaps = 34/299 (11%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           +Q+     +Y +  I    ++ L    I+   +    +K+   ++      I++ L    
Sbjct: 2   QQYRFLYDYYLKGFIGKIKLKNLLPYHIQKVYNNLVEKKMKQGTVNNVRKMIRTLLNEAV 61

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           +R + +        N       P  L  KQ  +  +                N  +  LL
Sbjct: 62  RRGMLSAD-----DNPYPKVKAPSNLPVKQQRSFTEEQRDQFLQYAGKSLYAN--LYKLL 114

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQG----------------KGDKIRIVPLLPSVR 207
              G+R+ EAL+L   ++  D   L +                    + IR + L+P   
Sbjct: 115 LYTGMRVGEALALMICDVDWDNHVLHVTKNLQKTTQGMFYIETPKTRESIRDIYLVPEAE 174

Query: 208 KAILEYYDLC-------PFDLNLNIQLPLFRGIRGKPLN----PGVFQRYIRQLRRYLGL 256
           +A     +L          D+    +  LF   +GKP+N         R + ++R     
Sbjct: 175 EAFKSQLELRKIIVEPIQEDIKGEFENLLFVNTKGKPVNVGSVRQSINRIVAKIRADGND 234

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
                 H +RH + +  ++ G  L  +Q+ +GH  + TT  Y  +         M+I D
Sbjct: 235 CPDIWLHAMRHGYVSIAVARGVPLEVVQANVGHTSIETTMRYLELQPDYIRKQSMKISD 293


>gi|89147349|gb|ABD62535.1| integrase [uncultured bacterium]
          Length = 163

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/93 (36%), Positives = 48/93 (51%)

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           A  E+     F  +     P    ++   +     Q+ ++   R  G+    + HTLRHS
Sbjct: 70  ANREWCWQYVFPASKRSVDPRSGQVQRHHIAETALQKAVKSAIRRAGINKPGSCHTLRHS 129

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           FAT LL NG D+R+IQ +LGH  L TT IYT+V
Sbjct: 130 FATRLLENGYDVRTIQELLGHADLQTTMIYTHV 162


>gi|315444130|ref|YP_004077009.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315262433|gb|ADT99174.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
          Length = 380

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 67/331 (20%), Positives = 111/331 (33%), Gaps = 52/331 (15%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK--IGDR 86
           RGL+  T+ +      +F+ F   Y      +         ++  F++  R+++  I   
Sbjct: 50  RGLATSTITARCSLIGRFVEFTNEYPWRWRPL---------DLDQFLADLRSRETPIELS 100

Query: 87  SLKRSLSGIKSFLKY---------LKKRKITTESNIL-----NMRNLKKSNSLP---RAL 129
           +L+   + I  F  Y             K   +         N       +++P   RA 
Sbjct: 101 TLRSYSNAISMFCSYVSDSRYGWVPFCEKQFGDVPSQICFEWNTPRHSTDDAVPTKRRAF 160

Query: 130 NEKQALTLVDNVLLHTSHETKW------IDARNSAILYLLYGCGLRISEALSLTPQNI-- 181
            + +     D V      + +          R+S    + Y  GLR  E + L   +   
Sbjct: 161 TKTELQHFFDVVDDFVDEQHRAGSKRWLTALRDSIAFKVGYAYGLRRRELVMLDLTDFGP 220

Query: 182 ------MDDQSTLRIQGKGDKI-----RIVPL----LPSVRKAILEYYDLCPFDLNLNIQ 226
                   D   + ++           R   L     P   + +  +       L    +
Sbjct: 221 NPHVPRYGDYGAMTVRWAKGTTGSGPRRRTVLTVPEFPWAVELLQYWCTEGRQLLRTADR 280

Query: 227 LP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
            P L+   RG  L      R    LR   GLP     H LRHS+ THLL  G D   +Q 
Sbjct: 281 SPALWPSERGSRLTINALGRSFTALRARAGLPPELKLHCLRHSYTTHLLEAGYDPLFVQQ 340

Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            LGH   STT +YT+V S      + ++  +
Sbjct: 341 QLGHSYASTTALYTSVGSDFKQRVVQQMIAR 371


>gi|331656870|ref|ZP_08357832.1| integrase for prophage [Escherichia coli TA206]
 gi|331055118|gb|EGI27127.1| integrase for prophage [Escherichia coli TA206]
          Length = 350

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 94/239 (39%), Gaps = 29/239 (12%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + S++  +     ++    S + S F +  +  + +  + + NMR    +      L  +
Sbjct: 119 YFSEKWKKGASPVTVNLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q + L+         + K  D   + ++ +    G R  EA++LT   +   + T  ++ 
Sbjct: 179 QIVELL--------ADCKRQDPILALVVKICLSTGARWREAINLTRSQVTKYRITF-VRT 229

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+   + + I+                  F+    + L+       +     
Sbjct: 230 KGKKNRSIPISKELYEEIMAL-----------DGFNFFKDCYFQFLSVMEKTSIV----- 273

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              LP     H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++   +    + 
Sbjct: 274 ---LPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHLETALR 329


>gi|292655770|ref|YP_003535667.1| XerC/D-like integrase [Haloferax volcanii DS2]
 gi|291370783|gb|ADE03010.1| XerC/D-like integrase [Haloferax volcanii DS2]
          Length = 349

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 59/344 (17%), Positives = 112/344 (32%), Gaps = 66/344 (19%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI-TIQTIRQLSYTEIRAFISKRR 79
           +LQ++    G +  T  +YE   R F  FL   +     T +++   ++ +  A+I   R
Sbjct: 16  FLQDMTYH-GKTDRTRDAYERVLRAFESFLGDPSRNPAGTARSVDDATHRDCMAWIHTLR 74

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN----SLPRALNEKQAL 135
            + +   ++    S +  F  Y+ +      + +  +              R L+  Q  
Sbjct: 75  NRDVAPSTVATYASYLHRFYAYMAQVGAFDSNPMSLVMEEMDERIDTNPARRELSVPQMR 134

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-------- 187
             V                 + A++  L   G+R+ E  +L  +++     T        
Sbjct: 135 GFV----------RDIAHPLDHALVVTLLKTGMRVGELCNLDLRDVSLSAETPLDDVSTR 184

Query: 188 ---------LRI-----------------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
                    + +                   K  +  +VP+   +   +L +  + P   
Sbjct: 185 AALDGRGPSIYVAADPSVGSVTNGEERTASNKRKRSTVVPVDDELEAVLLRWLAIRPD-- 242

Query: 222 NLNIQLPLFRGI---RGKPLNPGVFQRYIRQLRRYLGL-------PLSTTAHTLRHSFAT 271
           + +   PLF G     G+ L P      +       G          + T H  RH F T
Sbjct: 243 SPSPAEPLFVGTASGWGRRLEPDAVHHVVTAHAADAGWYRAGGDREENVTPHYFRHFFTT 302

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           HL    GD   ++ + G         YT+    N GD + E Y+
Sbjct: 303 HLRDRTGDRGIVKYLRGDVAGDIIDTYTH----NWGDRVRETYE 342


>gi|223369842|gb|ACM88790.1| integrase [uncultured bacterium]
          Length = 163

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/100 (39%), Positives = 53/100 (53%)

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           L    R A  E+     F  +     P     R   ++  V Q  +++  R  G+    T
Sbjct: 63  LEHKYRGASREWAWQFVFPSSRISLDPRRSVRRRHHVDENVLQVAVKRAVRASGVNKPAT 122

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 123 CHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|60681334|ref|YP_211478.1| putative phage integrase/recombinase [Bacteroides fragilis NCTC
           9343]
 gi|60492768|emb|CAH07542.1| putative phage integrase/recombinase [Bacteroides fragilis NCTC
           9343]
          Length = 305

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 109/270 (40%), Gaps = 28/270 (10%)

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKS 122
            +++  +++ F+ ++    +  +S+K  L  +K  LK+  K      + I +++   ++ 
Sbjct: 43  DRINEADVQEFVFEKLNSGLSQKSIKDILIVLKMILKFGVKNGYFEYTQI-DIKFPTQRE 101

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
                 L+      ++ ++  + +             +Y+    G+RI E  +L  ++I 
Sbjct: 102 RQEIEVLSRSNHRKVISHIQENFTFRNLG--------IYICLCAGMRIGEICALKWEDID 153

Query: 183 DDQSTL-------RIQGKGDKIRIVPLL---PSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
            +   +       R+     + R   L+   P  + +I +          L     +   
Sbjct: 154 TENGIISVKKTIQRVYMIEGEERYTELILDSPKTKNSIRDIPMTRDLLKLLKPLKRIVNN 213

Query: 233 IRG------KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
                    KP  P  ++ Y +Q  + +G+P+    H LRHSFAT  + +  D +++  I
Sbjct: 214 NYFVLTNEAKPTEPRTYRNYYKQFMQEIGVPI-LKFHGLRHSFATRCIESKCDYKTVSVI 272

Query: 287 LGHFRLSTT-QIYTNVNSKNGGDWMMEIYD 315
           LGH  +STT  +Y + N +     + ++  
Sbjct: 273 LGHSNISTTLNLYVHPNMEQKKRCIDQMVK 302


>gi|269203657|ref|YP_003282926.1| integrase [Staphylococcus aureus subsp. aureus ED98]
 gi|262075947|gb|ACY11920.1| integrase [Staphylococcus aureus subsp. aureus ED98]
          Length = 345

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 122/297 (41%), Gaps = 19/297 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +  +NW++  + E  + + T + Y+   +          + KI    + +++    + 
Sbjct: 56  LEEYFENWIKTYK-EPVVKENTYRHYKNALQH-------IQQHKIGKMELSKINKQVYQK 107

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           FI+    +   + +++++   I+S L       +  ++    + N K         +EK+
Sbjct: 108 FINDYSKEHAKE-TIRKTNGAIRSALDDALYDGLIFKNPAYKV-NYKAGKP---TKSEKE 162

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
               V    +   H  K     + A+  ++   G R+S A ++  ++I   ++T+ I  +
Sbjct: 163 KFISVTEYEMLKEHVKKKRTRSSLALF-IMICTGCRVSGARNIKIEHINQVKNTIFIDER 221

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
                   +  S+ K+ +++         ++    +F+      +        ++   R 
Sbjct: 222 KTDTSPRYI--SIAKSDMKHIMDVISSFAISYDGYIFKESGFI-ITLQAINNALKSACRV 278

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDW 309
             +P+  T+H LRH+  ++LL+ G  +  I   LGH  ++ TT +Y+++  +   + 
Sbjct: 279 NNIPI-ITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEE 334


>gi|289583238|ref|YP_003481704.1| integrase family protein [Natrialba magadii ATCC 43099]
 gi|289532791|gb|ADD07142.1| integrase family protein [Natrialba magadii ATCC 43099]
          Length = 353

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 63/342 (18%), Positives = 122/342 (35%), Gaps = 69/342 (20%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L +     G S+ TL++YE   RQF  FL    +E  +++ +         A+I   R 
Sbjct: 19  FLDDQRYH-GKSERTLEAYERVLRQFETFL---GQEFSSVEAVPDADRRACMAWIHSLRG 74

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL----NMRNLKKSNSLPRALNEKQALT 136
           +     ++    S +  F  Y+ +     E+ +      +     +N   R L+  +  +
Sbjct: 75  E-FEPSTIATYASYLNRFYDYMNRIGAFEENPMALVMEELSESIDTNPTRRELSIDEMRS 133

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD------QSTLRI 190
            V ++                A++  L   G+R+ E  +L  +++  +      + T R+
Sbjct: 134 FVASI----------SHPLERAVVVTLLKTGMRVGELCNLDLRDLNAEFESVALEWTPRV 183

Query: 191 Q----------------------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           +                             K  +  ++P+   +R  +  +  + P   +
Sbjct: 184 ELDRRPSSVYVSDDPSRGAVTNGEERTASNKRKRETVIPVDDELRTELESWLAIRPD--S 241

Query: 223 LNIQLPLFRGIRG---KPLNPGVFQRYIRQLRRYLGL-------PLSTTAHTLRHSFATH 272
           ++   PLF   R    + L P   +  + +  R  G          + T H  RH F TH
Sbjct: 242 VSPAEPLFLDTRDSWGERLTPSDVRYVVEKHAREHGWYRTGGGTTENVTPHYFRHFFTTH 301

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           L    GD  ++Q + G         YT+    N GD + E Y
Sbjct: 302 LRDRTGDRGTVQYLRGDVAGDVIDTYTH----NWGDRVRETY 339


>gi|188492334|ref|ZP_02999604.1| integrase for prophage CP-933T [Escherichia coli 53638]
 gi|188487533|gb|EDU62636.1| integrase for prophage CP-933T [Escherichia coli 53638]
          Length = 341

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 95/248 (38%), Gaps = 36/248 (14%)

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILNMRNLKKSNSLPRALNEKQA 134
           S  + +   + ++ R  S + +    LK+      E+ +  +R+ K S S    L E + 
Sbjct: 115 SANKKKPTKEATVNREQSYLHAVFSELKRLGAWAGENPLEGVRHFKVSESELSFLYEDEI 174

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L+       + +          ++ +    G R SEA  LT   ++  + T     K 
Sbjct: 175 ERLLSVCDESGNADLGS-------VVRVCLATGARWSEAEKLTQSQVLPGRITFT-NTKS 226

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR-Y 253
            K R VP+  +++K +                       R   L    ++ +   L++  
Sbjct: 227 KKNRTVPISDNIQKLL---------------------PKRRGRLFSNCYEAFTWALKKAK 265

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW---- 309
           + LP     H LRH+FA+H + NGG++  +Q ILGH  +  T  Y +    +        
Sbjct: 266 IELPEGQRTHVLRHTFASHFMMNGGNILVLQQILGHSTILMTMRYAHFAPDHLEAAVTLN 325

Query: 310 -MMEIYDQ 316
            +  IY +
Sbjct: 326 PLDRIYTK 333


>gi|119963826|ref|YP_947503.1| phage integrase family protein [Arthrobacter aurescens TC1]
 gi|119950685|gb|ABM09596.1| phage integrase family domain protein [Arthrobacter aurescens TC1]
          Length = 304

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/300 (17%), Positives = 103/300 (34%), Gaps = 21/300 (7%)

Query: 36  LQSYEC----DTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           L+ YE       RQ    +     +    + ++ +  +EI+A+ ++   + + D ++   
Sbjct: 16  LKGYENNRPSTVRQARTHIKRINGD-FGSRALKSVRPSEIKAWTARLSDEGLADSTVYAL 74

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
            S +           +  +S +      K            Q   L D +          
Sbjct: 75  HSRLSQLFADAVHDGLLPKSPVSRRTAPKAGKQRAYVATTAQVWALHDAMPSGLQPA--- 131

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR--IQGKGDKIRIVPLLPSVRKA 209
                   + L    GLRI EA++L   ++   +  +   IQ  G +++       +   
Sbjct: 132 --------ILLAAFAGLRIGEAVALRVSDVDFMRGIITPAIQYPGVELKTEESKNPIPVP 183

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-GLPLSTTAHTLRHS 268
                +L         +  L     G+ ++P   + Y R  R  + GLP     H LRH 
Sbjct: 184 QNLCLELSVNHARWGSET-LVTNEWGRSISPHRVEHYFRDARSSVKGLPEGFRFHDLRHY 242

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
           FA+ L++ G D++ +Q  L H    TT   Y ++           +       +  + ++
Sbjct: 243 FASLLIAQGLDVKVVQKSLRHSSAKTTLDTYGHMWPDKEETARAAVAGVLADRLKSRTEQ 302


>gi|26246822|ref|NP_752862.1| integrase for prophage [Escherichia coli CFT073]
 gi|26107222|gb|AAN79405.1|AE016758_9 Integrase for prophage [Escherichia coli CFT073]
          Length = 343

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 93/239 (38%), Gaps = 29/239 (12%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + S++  +     ++    S + S F +  +  + +  + + NMR    +      L  +
Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q + L+         + K  D   + ++ +    G R  EA++LT   +   + T  ++ 
Sbjct: 179 QIVELL--------ADCKRQDPILALVVKICLSTGARWREAINLTRSQVTKYRITF-VRT 229

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+   + + I+       F                       FQ      + 
Sbjct: 230 KGKKNRSIPISKELYEEIMALDGFNFF-------------------TDCYFQFLSVMEKT 270

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++   +    + 
Sbjct: 271 SIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHLETALR 329


>gi|212691988|ref|ZP_03300116.1| hypothetical protein BACDOR_01483 [Bacteroides dorei DSM 17855]
 gi|212665380|gb|EEB25952.1| hypothetical protein BACDOR_01483 [Bacteroides dorei DSM 17855]
          Length = 308

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/311 (18%), Positives = 111/311 (35%), Gaps = 37/311 (11%)

Query: 33  KLTLQ----SYECDTRQFLIFLAFYTEEKITIQTI-------RQLSYTEIRAFISKRRTQ 81
           K T++    ++  D R ++    F     I    I         LS   ++ F+ +    
Sbjct: 3   KKTIREIADAWREDKRPYVKQSTFAAYMLILENHILPYFGNDDTLSEKSVQTFVLQNLNA 62

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +  +S+K  L  +K  +K+  K +  +                P     K+   L    
Sbjct: 63  GMSAKSVKDILIVLKMVMKFGVKNEWMSYCEW--------EIKYPSTETNKELEVLTVAN 114

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
                   +      +  +Y+    GLRI E  +L   +I  +  T+ +Q   ++I ++ 
Sbjct: 115 HKKILDYIRQNFTFRNLGIYISLSTGLRIGEVCALRWSDIDIEAGTISVQRTIERIYVIE 174

Query: 202 LLPSVRKAIL----------------EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
                 K ++                E   +      +             P  P  ++ 
Sbjct: 175 GDKKHTKLVINTPKTKNSCREIPMSKELISMVKPLKKIVNTDYYVLTNEPSPTEPRTYRN 234

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
           Y ++L   LG+P     H LRHSFAT  + +  D +++  +LGH  +STT  +Y + N +
Sbjct: 235 YYKRLMEQLGIPK-LKYHGLRHSFATRCIESNCDYKTVSVLLGHSNISTTLNLYVHPNME 293

Query: 305 NGGDWMMEIYD 315
                + +++ 
Sbjct: 294 QKKRCIAKMFK 304


>gi|154492801|ref|ZP_02032427.1| hypothetical protein PARMER_02440 [Parabacteroides merdae ATCC
           43184]
 gi|154087106|gb|EDN86151.1| hypothetical protein PARMER_02440 [Parabacteroides merdae ATCC
           43184]
          Length = 409

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 55/283 (19%), Positives = 108/283 (38%), Gaps = 29/283 (10%)

Query: 35  TLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK-RSL 92
           T+ SY    +   +F+   Y    I    + +    +    +      K+G      R +
Sbjct: 133 TMSSYHTVRKHLQVFIGEKYHTADIPFGQMEE----DFLECLQHYSVGKLGHSQGHYRKM 188

Query: 93  S-GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           +  +K   +   +  +T      ++   +  N  PRAL+      L+   L    +E + 
Sbjct: 189 ALAVKKLCRLAYREGLTERQLFAHIEIERGENKQPRALDRASLDKLL--GLTFEPYEVEL 246

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRI---QGKGDKIRIVPLLPSVR 207
             ARN  +       G+   + ++L  +++  DD+  L +   + K + +  V LL    
Sbjct: 247 ETARNLFLFSC--YTGVAYCDMVALNREHLFTDDEGALWLKFRRQKTNTLCRVKLLSEAV 304

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + I  Y                 R     P+    +   ++ L+   G+ +  +AH  RH
Sbjct: 305 RMIERYQSEE-------------RNTLFAPITYSAYLVQLKALQLRAGISIPLSAHVGRH 351

Query: 268 SFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           +FAT + L  G  + ++  +LGH  + TT+ Y +V  K   D 
Sbjct: 352 TFATLITLERGVPIETVSRMLGHSNIQTTERYAHVTPKKLFDE 394


>gi|282858447|ref|ZP_06267626.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282588763|gb|EFB93889.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 422

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/315 (17%), Positives = 121/315 (38%), Gaps = 32/315 (10%)

Query: 14  LLKERQNWLQNLEIERGL--SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ--LSYT 69
           LL+E + +++      GL  +K T  +Y          +  Y  E++ ++ IR   L Y 
Sbjct: 110 LLEEARLFIEEKRPCVGLTIAKPTFANYIY----AAQLIKSYLRERLGLEDIRYSLLDYG 165

Query: 70  EIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            I       ++++ +   +++ ++  ++  +   +++K        + +  +  +   R 
Sbjct: 166 FIEGLDFYLKSERNLSLATIQVAVIFLRKLIGIGQQKKYIRIDPFADYKA-ELPHRTRRY 224

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQ 185
           L  ++   ++   ++    E          +       GL   +   L P++     D  
Sbjct: 225 LTTEELQRVLQTPIIDKQFERA------RQLFLFCAFTGLARVDMQRLKPKHITHNADGT 278

Query: 186 STLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
             +RI + K +   I+PLLP  ++ +  Y        +      +F       L      
Sbjct: 279 EEIRIKRQKTNVEAIIPLLPIAKQILSLYI------KDKKADDLIFPN-----LTIRKAS 327

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
                + +   +    T H  RH+F+T   LSNG  + ++  +LGH  + TTQIY  +  
Sbjct: 328 FACVNIGQICWIEKGLTFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITD 387

Query: 304 KNGGDWMMEIYDQTH 318
               + M  + D+ H
Sbjct: 388 HKIQEDMTALTDKEH 402


>gi|255654694|ref|ZP_05400103.1| integrase [Clostridium difficile QCD-23m63]
          Length = 396

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 105/298 (35%), Gaps = 38/298 (12%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           RQ+L  +     + + ++ I  +  ++ + +  +   +    +++      +K+      
Sbjct: 107 RQYL--MNALKNDPLGMRAIDTVKQSDAKEWAIRMSEKGYAYKTIDNYKRSLKASFYMAI 164

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           +     ++        K S+ L     +K  LT      L    E   I ++    + LL
Sbjct: 165 QDDCIRKNPFE----FKLSDVLEDDTEQKVILTPEQEERLLAFMEKDKIYSKYYDEVVLL 220

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVR 207
              GLRISE   LT  +I      L I                    +  R +PL     
Sbjct: 221 LETGLRISEFCGLTT-HIDMQNRILNIDHQLLKDSEMGYYIETPKTKNGKRELPLTERAY 279

Query: 208 KAILEYYDLCPFDLNL---NIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGL 256
           +AI            L        LF    G P        +  G+ ++Y +     L  
Sbjct: 280 QAIQRILKNRGKAQPLIIGGYSNFLFLNREGLPKVAGNYEGMVRGLIKKYNKYHTDKL-- 337

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
             + T H+ RH++ T++ + G +  ++Q ++GH  ++ T   Y +   ++    +  +
Sbjct: 338 -PNITPHSFRHTYCTNMANRGMNPNTLQYLMGHANITMTLGYYAHGTFQSAKAELERL 394


>gi|189462248|ref|ZP_03011033.1| hypothetical protein BACCOP_02934 [Bacteroides coprocola DSM 17136]
 gi|189431050|gb|EDV00035.1| hypothetical protein BACCOP_02934 [Bacteroides coprocola DSM 17136]
          Length = 406

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 118/319 (36%), Gaps = 28/319 (8%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
            N++PE +      ER+     L I R     +  +Y       L    F     +    
Sbjct: 97  ANSVPEYLLQAGEVERER----LRI-RSAEINSTSTYRQSKTTQLNLRQFIESRGMKDIA 151

Query: 63  IRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
              ++     +F    + +    +  +   L  +   +     R+I   + I ++   KK
Sbjct: 152 FSDITEEFAESFKVFLKKELGYRNSHVSHCLCWLNRLIYIAVDREILRANPIEDVAYEKK 211

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
                R ++  +   +++     T      ++      ++     GL  ++  +L P++I
Sbjct: 212 EPLKLRHISRGELKRMME-----TPLPDPMMELARRTFIFSSL-TGLAYADTRALHPRHI 265

Query: 182 ---MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
               + +  +R+ + K D    +PL P   + +  Y          +   P+F       
Sbjct: 266 GKTSEGRKYIRVCRAKTDVEAFIPLHPIAEQILELYNT-------TDDDRPVFPLPV--- 315

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
               V    +  +   LG+  + + H  RHSF T +LS+G  + SI  ++GH  +++TQ+
Sbjct: 316 --RDVLWYEVHGMGVALGMKENLSYHMARHSFGTLMLSSGIPIESIAKMMGHTNINSTQV 373

Query: 298 YTNVNSKNGGDWMMEIYDQ 316
           Y  V  +     M ++  +
Sbjct: 374 YAQVTDRKISGDMDQLMKR 392


>gi|120403138|ref|YP_952967.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119955956|gb|ABM12961.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 663

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 62/309 (20%), Positives = 106/309 (34%), Gaps = 30/309 (9%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L    + +L+    + G S         D     +  +  TE   T     Q     I  
Sbjct: 231 LRAAVKQFLRW-RHDTGHSP---SGMHRDLTVLTLLSSALTECAGTNARPEQFDRAVITR 286

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM----RNLKKSNSLPRAL 129
            ++    +     + ++ LS ++ FL+  ++        +          K++   PR L
Sbjct: 287 LLTVLTERGHPPNARRQRLSSVRRFLEIARQHDWIAGVPVGAALYSEDFPKETKLAPRGL 346

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--- 186
                   V   L    +  K  D R   +  LL   GLR+++AL L    ++ DQ    
Sbjct: 347 P-----ASVMAQLESAENLAKLTDPRWRLLFPLLMETGLRLNDALHLPQDCVIHDQQNAP 401

Query: 187 TLR-IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            LR +  K  +  +VP+ P +  AI E           + +  LF      P        
Sbjct: 402 YLRYLNRKMKREALVPISPEMAAAINE--QAARVRTQYSAKAVLFPRQTMNPDGRHPVSS 459

Query: 246 YIRQ-----------LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           Y  +           +    G P+  TAH  RH+  T L++N      ++ IL H  L  
Sbjct: 460 YAHRTALDTWIQQCRIVDETGAPMRVTAHQFRHTLGTRLINNDVPQEVVRKILDHTSLEM 519

Query: 295 TQIYTNVNS 303
           T  Y  ++ 
Sbjct: 520 TAHYARLHD 528


>gi|15927578|ref|NP_375111.1| integrase [Staphylococcus aureus subsp. aureus N315]
 gi|30043990|ref|NP_835517.1| integrase [Staphylococcus phage phiN315]
 gi|258413679|ref|ZP_05681953.1| integrase [Staphylococcus aureus A9763]
 gi|258447832|ref|ZP_05695967.1| integrase [Staphylococcus aureus A6224]
 gi|282928804|ref|ZP_06336397.1| integrase [Staphylococcus aureus A10102]
 gi|13701797|dbj|BAB43090.1| integrase [Staphylococcus aureus subsp. aureus N315]
 gi|257839632|gb|EEV64102.1| integrase [Staphylococcus aureus A9763]
 gi|257858929|gb|EEV81797.1| integrase [Staphylococcus aureus A6224]
 gi|282589539|gb|EFB94627.1| integrase [Staphylococcus aureus A10102]
 gi|285817688|gb|ADC38175.1| Integrase, phage associated [Staphylococcus phage phiN315]
 gi|312830375|emb|CBX35217.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           ECT-R 2]
          Length = 345

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 113/278 (40%), Gaps = 18/278 (6%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           + T + Y    +          + KI    + +++    + FI+   +++    +++++ 
Sbjct: 74  ENTYRHYRNALQH-------IQKHKIGKMELSKINRQVYQKFIND-HSKEHAKETIRKTN 125

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             I+S L       +  ++    + N K         +E++    V    +   H  K  
Sbjct: 126 GAIRSALDDALYDGLIFKNPAYKV-NYKAGKP---TKSEQEKFISVTEYEILKDHVRKKR 181

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
              + A+  ++   G R+S A ++  ++I   ++T+ I  +        +  S+ K+ ++
Sbjct: 182 TRSSLALF-IMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYI--SIAKSDMK 238

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +         ++    +F+      +N       ++   R   +P+  T+H LRH+  ++
Sbjct: 239 HIMDVISTFAISYDGYIFKEAGSI-INLQAINNALKSACRVNNIPI-ITSHALRHTHCSY 296

Query: 273 LLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDW 309
           LL+ G  +  I   LGH  ++ TT +Y+++  +   + 
Sbjct: 297 LLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEE 334


>gi|333030040|ref|ZP_08458101.1| integrase family protein [Bacteroides coprosuis DSM 18011]
 gi|332740637|gb|EGJ71119.1| integrase family protein [Bacteroides coprosuis DSM 18011]
          Length = 410

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 55/280 (19%), Positives = 104/280 (37%), Gaps = 23/280 (8%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSLKRSLS 93
           T++ YE   R+   F+ F    KI+   I++++   I  F +  RT  K    +  + + 
Sbjct: 132 TVEKYELTRRRLHEFMTFKY--KISDINIKEVNNMFILDFETYMRTIGKCSANTAAKYMR 189

Query: 94  GIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             K  +   K   +       + +   KK++     L + +   ++D        E    
Sbjct: 190 LFKKIILLAKNNGLLNADPFASYKIQFKKTDR--GYLTQYELEAIMDKEFEIERLE---- 243

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRIVPLLPSVRKAIL 211
                 I       GL   +   L  ++I +       I  K  K  I   +P +    L
Sbjct: 244 --HVRDIFIFACFTGLAYIDVQKLRKEHIRESFDGKPWIMTKQQKTNISTNVP-LLDVPL 300

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
                    L  +  LP+    +           Y++++     +  + T H  RH+F+T
Sbjct: 301 AILKKYEDKLTGDKLLPVPSNQK--------LNSYLKEIADLCNVKKNLTFHMARHTFST 352

Query: 272 HL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            + LS G  + S+  +LGH  + TTQIY  + ++   + M
Sbjct: 353 TITLSQGVPIESVSKMLGHTNIRTTQIYARITNEKVSNDM 392


>gi|296100765|ref|YP_003610911.1| putative integrase [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295055224|gb|ADF59962.1| putative integrase [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 398

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 53/275 (19%), Positives = 113/275 (41%), Gaps = 24/275 (8%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           +S+  D +++   +     +++    +  ++   I   + +  +  +   +  R +  IK
Sbjct: 125 RSWGKDVQRYRDHIRPAIGQRL----LSDITPASILR-LQQTLSTSLSAATCNRVIVLIK 179

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
           +   +  ++ +T+      ++ L+++N+  R   E +   +     L   ++T  + AR 
Sbjct: 180 AVFTWAGRQSMTSVHPARVVQLLRENNARQRYFTEDEIRRIF----LSADNDTSPVAARY 235

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYD 215
              + LL   GLR  E      +++   + TL + + K    RIV L       I     
Sbjct: 236 ---VKLLLLTGLRRDELRLAKWEHVDPVKRTLWLPETKNGYGRIVHLNSLAMDVIRTLPT 292

Query: 216 LCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHL 273
                        LF G +   PL+  V  +  +++ R  G+       HT RHS A  +
Sbjct: 293 QR-------GNPWLFIGKKQGMPLSNPV--KAFQRIVRRAGIFDKEVCIHTCRHSVAALI 343

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +S GG L  +Q+ LGH    ++Q Y +++ +   +
Sbjct: 344 VSYGGTLYDVQAQLGHRSSQSSQRYAHLHPQRLQN 378


>gi|229551629|ref|ZP_04440354.1| bacteriophage integrase [Lactobacillus rhamnosus LMS2-1]
 gi|229314947|gb|EEN80920.1| bacteriophage integrase [Lactobacillus rhamnosus LMS2-1]
          Length = 376

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 58/320 (18%), Positives = 123/320 (38%), Gaps = 35/320 (10%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L+     W++  +  +  S++T   Y+   +Q L +     E       ++ +S ++ +A
Sbjct: 63  LIDYWDKWIELYKSGKH-SRITEARYKTIRKQLLAYWGESRE-------LKSISKSDWQA 114

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNE 131
           FI++   +K    ++ +    ++S        +I   +   N+     +    + + L  
Sbjct: 115 FINEF-GKKRAKDTVSKLNGYVRSMADSAVDDQIIYTNFTHNVVLTGNEGQAGIIKYLQV 173

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           K    LV+  L    +E          I+      G R SE L LT  ++   +  + I 
Sbjct: 174 KDLRKLVNYCLEFADYE-----HIAYYIIATGALTGARYSEVLGLTWDHVDLKKRVVHIT 228

Query: 192 GKGDK--------------IRIVPLLPSVRKAIL----EYYDLCPFDLNLNIQLPLFRGI 233
              D               +R + +   +   +L    E  ++       + +  LFR I
Sbjct: 229 RTWDHRYGSGFAATKNKSSVRDIDITRELADLLLRLKKEQQEVYLAQGYRDSKQLLFRSI 288

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   L+     + +R + + L +  + T H LRH+  ++L++N  D+  I   LGH    
Sbjct: 289 RHNMLSSTAINKDLRTIEKTLDISPAITFHGLRHTHVSYLIANHVDINYISKRLGHANTM 348

Query: 294 TTQ-IYTNVNSKNGGDWMME 312
            TQ +Y ++      + + +
Sbjct: 349 ITQKVYAHLLEDQRKEQVSQ 368


>gi|188526796|gb|ACD62279.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 49/94 (52%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 65  RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGVAKPATPHTLRH 124

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            FAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 125 LFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|301162746|emb|CBW22293.1| putative bacteriophage integrase [Bacteroides fragilis 638R]
          Length = 410

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/290 (17%), Positives = 108/290 (37%), Gaps = 25/290 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKR 90
           S+ +   Y         F+      K++   +++L+   I  F    RT+K     ++  
Sbjct: 129 SERSYWKYCTVYNHLSEFIKQRY--KVSDIALKELTPAFITDFELFLRTEKDHCTNTVWS 186

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +  ++  +                  ++ K  +    L +++   L++      S+E  
Sbjct: 187 YMMPLRRIIYMAINNGWLQRDPFYGY-SITKEETKRGFLTKEEITQLINGTFKKKSYELI 245

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRIQGKGDKIRIVPLLPSVR 207
                   +       GL  ++   LT +N     D    ++ + +         L  V 
Sbjct: 246 ------RDLFIFCTFTGLSWTDMYHLTKENLEISFDGHLWIKTKRQKTGTESNIRLLEVA 299

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + I+E Y+    D  L + +P +   +            I+ + +Y G+  + T H  RH
Sbjct: 300 RHIIEKYEGMAKDGKL-LPVPCYSNCKNG----------IKVIAKYCGIEKNVTWHQSRH 348

Query: 268 SFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           S+AT   LSN   + ++  +LGH  + TTQIY  + ++     M ++  Q
Sbjct: 349 SYATTVCLSNDVPIETLSKMLGHRSIRTTQIYAKITAEKVSRDMEKLSKQ 398


>gi|257883553|ref|ZP_05663206.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257891894|ref|ZP_05671547.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|257894754|ref|ZP_05674407.1| phage integrase [Enterococcus faecium 1,231,408]
 gi|260562612|ref|ZP_05833114.1| phage integrase [Enterococcus faecium C68]
 gi|261207968|ref|ZP_05922648.1| phage integrase [Enterococcus faecium TC 6]
 gi|294619382|ref|ZP_06698841.1| integrase [Enterococcus faecium E1679]
 gi|294621339|ref|ZP_06700517.1| integrase [Enterococcus faecium U0317]
 gi|257819211|gb|EEV46539.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257828254|gb|EEV54880.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|257831133|gb|EEV57740.1| phage integrase [Enterococcus faecium 1,231,408]
 gi|260072940|gb|EEW61293.1| phage integrase [Enterococcus faecium C68]
 gi|260077838|gb|EEW65549.1| phage integrase [Enterococcus faecium TC 6]
 gi|291594372|gb|EFF25790.1| integrase [Enterococcus faecium E1679]
 gi|291599082|gb|EFF30121.1| integrase [Enterococcus faecium U0317]
          Length = 361

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 60/344 (17%), Positives = 135/344 (39%), Gaps = 51/344 (14%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFIS 76
            ++++Q+   ++  S  T   Y  + + F  +L +       +I +IRQL+  ++  + S
Sbjct: 21  IKDFVQD-REDKDQSPRTTLEYLKNYKLFYEWLLSESIVPDTSITSIRQLTAYDLNLYKS 79

Query: 77  KRRTQ--------------------KIGDRSLKRSLSGIKSFLKY-------LKKRKITT 109
             + +                     +   ++ R+++ +K   KY          +    
Sbjct: 80  HLKRRTKENVKKETTKTKLKDNNNLGLSTSTINRNITALKVLFKYLSKSSNNPLGKPYLE 139

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVD----NVLLHTSHETK------------WID 153
            + +  +  +    +L    N  +    +D    N L + ++E K               
Sbjct: 140 NNPMDQVATITDKTTLAARANAIEKKLFLDEDTQNYLDYIANEYKKTLSKRALIYYQRDV 199

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            R+ AI  L+ G GLR+SE +++  +++  +++ + +  KG+K   V +     + +  Y
Sbjct: 200 ERDLAINALILGSGLRLSEVVNINLEDLSLEKNNVVVTRKGNKRDAVNIAAFAMEYLANY 259

Query: 214 YDLCPFDLNL-NIQLPLFRGIRG---KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
             +      +   +  LF  I     K ++    +R + +  +  G  +  + H LRH+ 
Sbjct: 260 LAIRKERYKVTENEKALFLAIYQGEAKRISGIAIERMVAKYSK--GFRVQVSPHKLRHTL 317

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           AT L      L      LGH   +TT +YT++++    D +  +
Sbjct: 318 ATRLYQQTNSLVLTAQQLGHTSTNTTTLYTHIDNAATIDALNAL 361


>gi|196044897|ref|ZP_03112131.1| phage integrase family protein [Bacillus cereus 03BB108]
 gi|196024385|gb|EDX63058.1| phage integrase family protein [Bacillus cereus 03BB108]
          Length = 372

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 58/279 (20%), Positives = 103/279 (36%), Gaps = 35/279 (12%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY-------LKKRKITTESNIL- 114
           I +++  +   F      + +   + ++  S + SFL Y           K   +  ++ 
Sbjct: 68  IWEITIRDADQFYLGLVGRGLAYSTRRKYQSTLSSFLDYLRTRHSHEIWEKYRVQVPVVI 127

Query: 115 ----------NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID-ARNSAILYLL 163
                     +    K    LP  L         + +        K+   AR+  +  LL
Sbjct: 128 DKFNKYYHRNDDHEEKVIPPLPGVL-----ERFWEGLKAEMQSARKYSTVARDYTVFRLL 182

Query: 164 YGCGLRISEALSLTPQNIMDD---QSTLRIQ------GKGDKIRIVPLLPSVRKAILEYY 214
              GLR  E + L  ++   D      L ++      G G K R VPLL +    +  Y 
Sbjct: 183 ELTGLRSFEIVMLDVKDCRFDLGENGKLHVRYGKGSKGSGYKRRWVPLLDNADILLKWYL 242

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS--TTAHTLRHSFATH 272
           +      +     PLF    G  L+    +  +R+ ++ LG       + H LRH+FAT 
Sbjct: 243 ENIRPLFSKQNHGPLFYAESGNRLSRDSARSALRRRQKNLGFSEEEIFSPHQLRHAFATR 302

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
               G DL +++ +LGH  ++TT  Y   +S +    + 
Sbjct: 303 QTETGVDLLTLKELLGHVEVATTFNYVKPSSDHIEKRVR 341


>gi|89147486|gb|ABD62603.1| integrase [uncultured bacterium]
          Length = 163

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 51/112 (45%)

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           ++G G              A  ++     F   +    P         ++    Q+ ++ 
Sbjct: 51  LEGFGQVPLPFAFQRKSPSAATDWLWQFVFPSAIRTCNPDTGERTRFHISNSTVQKALKS 110

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             R   +    T HTLRHSFATHLL +G D+R++Q +LGH  L TT IYT+V
Sbjct: 111 AARRARIFKRVTCHTLRHSFATHLLESGYDIRTVQELLGHKDLRTTMIYTHV 162


>gi|257880694|ref|ZP_05660347.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257814922|gb|EEV43680.1| phage integrase [Enterococcus faecium 1,230,933]
          Length = 364

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 60/344 (17%), Positives = 135/344 (39%), Gaps = 51/344 (14%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFIS 76
            ++++Q+   ++  S  T   Y  + + F  +L +       +I +IRQL+  ++  + S
Sbjct: 24  IKDFVQD-REDKDQSPRTTLEYLKNYKLFYEWLLSESIIPDTSITSIRQLTAYDLNLYKS 82

Query: 77  KRRTQ--------------------KIGDRSLKRSLSGIKSFLKY-------LKKRKITT 109
             + +                     +   ++ R+++ +K   KY          +    
Sbjct: 83  HLKRRTKENVKKETTKTKLKDNNNLGLSTSTINRNITALKVLFKYLSKSSNNPLGKPYLE 142

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVD----NVLLHTSHETK------------WID 153
            + +  +  +    +L    N  +    +D    N L + ++E K               
Sbjct: 143 NNPMDQVATITDKTTLAARANAIEKKLFLDEDTQNYLDYIANEYKKTLSKRALIYYQRDV 202

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            R+ AI  L+ G GLR+SE +++  +++  +++ + +  KG+K   V +     + +  Y
Sbjct: 203 ERDLAINALILGSGLRLSEVVNINLEDLSLEKNNVVVTRKGNKRDAVNIAAFAMEYLANY 262

Query: 214 YDLCPFDLNL-NIQLPLFRGIRG---KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
             +      +   +  LF  I     K ++    +R + +  +  G  +  + H LRH+ 
Sbjct: 263 LAIRKERYKVTENEKALFLAIYQGEAKRISGIAIERMVAKYSK--GFRVQVSPHKLRHTL 320

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           AT L      L      LGH   +TT +YT++++    D +  +
Sbjct: 321 ATRLYQQTNSLVLTAQQLGHTSTNTTTLYTHIDNAATIDALNAL 364


>gi|251779332|ref|ZP_04822252.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243083647|gb|EES49537.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 369

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/284 (17%), Positives = 98/284 (34%), Gaps = 34/284 (11%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSL 92
            T   Y+   +  +I +       +    + +++   I+ F +     +K+   ++K+S+
Sbjct: 84  NTRVGYQSRIKTHIIPM-------LGNYKLNEITTPIIQDFYNIMISEKKLKPATVKKSM 136

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             + S  KY KK K+  E     +   K      +  N+      +           K  
Sbjct: 137 DILISCFKYAKKNKLIYELPTE-IEKQKIEKPKIKVWNKDHVQLFL----------NKIK 185

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK-------------GDKIRI 199
                  +++    GLR+SE   L   ++  D   L +  +             G K   
Sbjct: 186 GTYLYTPIFIDVLTGLRLSELCGLRWCDVDLDNGYLTVNHQLIYDAITRTLLLGGLKTES 245

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ-RYIRQLRRYLGLPL 258
                S+   ++ Y               L          P      + +++ +Y     
Sbjct: 246 SHRKISIPTILINYLKELKEYRKAEKNDYLVLDRNDFKYTPKSLSMNFTKKIAKYKEQLP 305

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
             T H LRH+ AT L+SNG +++ +   LGH  +  T   YT+V
Sbjct: 306 QITFHGLRHTHATILISNGENIKVVSERLGHTDIRMTLNTYTHV 349


>gi|33867121|ref|NP_898679.1| putative DNA integrase/recombinase [Rhodococcus erythropolis]
 gi|33668955|gb|AAP73949.1| putative DNA integrase/recombinase [Rhodococcus erythropolis]
          Length = 419

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 66/374 (17%), Positives = 127/374 (33%), Gaps = 80/374 (21%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E ++  + + + L I  G S  T++SY  D    L +  F     +      ++   +  
Sbjct: 39  ERVESVEVFFREL-IASGRSVATVRSYGMDL---LRWWRFLHAVDVAWDRADRVDARDFS 94

Query: 73  AFI---SKRRTQ----------------------------KIGDRSLKRSLSGIKSFLKY 101
            +I   +K R                                   ++  S + ++SF  +
Sbjct: 95  CWIQLTAKARQGSVVPASAEAAATAAASPNPVTGKPALGAGYSPATVAHSETVLRSFYDF 154

Query: 102 LK-------------------KRKITTESNILNMR-------NLKKSNSLPRALNEKQAL 135
            +                   +R     + + +           + S  +PRA+ E    
Sbjct: 155 HRDAGTGPLLNPFPLDLSRRSRRAHAHHNPMDHWAPERVGRYRPRVSQRIPRAIPED--- 211

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG- 194
            L D +    S +       + A++      G+R SE L +   ++   Q  + +  KG 
Sbjct: 212 -LFDKLFAALSSDR------DRALVAFWISSGVRASELLGVRECDVDPGQQLITVVRKGT 264

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK--PLNPGVFQRYIRQLRR 252
             +  VP        +  Y +    ++ L    PL+  +R    PLN     R     R 
Sbjct: 265 RAVEQVPASADAFVWLRLYQEQLRGEVPLGRMQPLWWTLRRPRRPLNYHAAHRMFE--RA 322

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              L    T H LRHS A  + ++    L  ++ +LGH  LSTT+IY    + +  + + 
Sbjct: 323 NATLGSDWTLHDLRHSAARRMANDPHLSLVEVKEVLGHAHLSTTEIYL---TPDKDEVIA 379

Query: 312 EIYDQTHPSITQKD 325
            +      +  Q++
Sbjct: 380 SVLAHHARTADQRE 393


>gi|325525694|gb|EGD03452.1| site-specific tyrosine recombinase XerC [Burkholderia sp. TJI49]
          Length = 106

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 5/110 (4%)

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            ++R  +++     +  RS+   LS  ++F ++L +      + +  +R  K+  +LP+A
Sbjct: 1   ADMRGAVARAHAGGLSARSISHRLSAWRAFYRWLAQHVEMPANPVAAVRAPKRPKTLPKA 60

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           L+   A TL++  L  T+        R+ AIL L Y  GLR++E + L  
Sbjct: 61  LSVDDASTLMEAPLADTTE-----GIRDHAILELFYSSGLRLAELIGLDV 105


>gi|325298292|ref|YP_004258209.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|330995849|ref|ZP_08319745.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|324317845|gb|ADY35736.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|329574380|gb|EGG55951.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 406

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 88/256 (34%), Gaps = 19/256 (7%)

Query: 57  KITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           + T  ++ +L+   I+ F +     + + + ++  +   +K  +       +   +    
Sbjct: 152 RRTDMSMLELTPDFIKEFAAYLTAERGLKNATIWLNCMWLKGVVMRAHYNGLIPRNPFAQ 211

Query: 116 MR-NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
              +          L E +   ++     H          R+  I        L   +  
Sbjct: 212 FHISPNVKER--EYLTEDEIKRIM----AHEFDNPTLALVRDLFIFACF--TALSFVDMK 263

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
            LT   I++      I  K    R    +P   K +     +      L+    +F    
Sbjct: 264 ELTTDEIVEVNGEKWILSK----RHKTNVPFQVKLLDIPLQIIERYKYLSEDKLVF---- 315

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              +N     + ++++    G+    + H  RH+F T  LS G  + S+  +LGH  + T
Sbjct: 316 -GKINYWTMCKQLKKVMAECGIEKQISYHCARHTFGTLALSKGMPIESVSRVLGHTNIVT 374

Query: 295 TQIYTNVNSKNGGDWM 310
           TQIY  + ++   + +
Sbjct: 375 TQIYAKITTQKLDNDL 390


>gi|253315027|ref|ZP_04838240.1| integrase [Staphylococcus aureus subsp. aureus str. CF-Marseille]
          Length = 341

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 113/278 (40%), Gaps = 18/278 (6%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           + T + Y    +          + KI    + +++    + FI+   +++    +++++ 
Sbjct: 74  ENTYRHYRNALQH-------IQKHKIGKMELSKINRQVYQKFIND-HSKEHAKETIRKTN 125

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             I+S L       +  ++    + N K         +E++    V    +   H  K  
Sbjct: 126 GAIRSALDDALYDGLIFKNPAYKV-NYKAGKP---TKSEQEKFISVTEYEILKDHVRKKR 181

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
              + A+  ++   G R+S A ++  ++I   ++T+ I  +        +  S+ K+ ++
Sbjct: 182 TRSSLALF-IMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYI--SIAKSDMK 238

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +         ++    +F+      +N       ++   R   +P+  T+H LRH+  ++
Sbjct: 239 HIMDVISTFAISYDGYIFKEAGSI-INLQAINNALKSACRVNNIPI-ITSHALRHTHCSY 296

Query: 273 LLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDW 309
           LL+ G  +  I   LGH  ++ TT +Y+++  +   + 
Sbjct: 297 LLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEE 334


>gi|163800577|ref|ZP_02194478.1| putative integrase [Vibrio sp. AND4]
 gi|159176020|gb|EDP60814.1| putative integrase [Vibrio sp. AND4]
          Length = 407

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/289 (17%), Positives = 94/289 (32%), Gaps = 50/289 (17%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
            +Y+     F I    Y   + +  T+   S +E+RA + K      G R+L      I 
Sbjct: 102 STYKKYVSLFKITKNAYGANR-SCSTLSPESVSELRALLIK----GRGARTLNTYFRAIN 156

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
           +F  +L K      +    M ++K            +    +D  +            ++
Sbjct: 157 TFFGWLHKMGYVDRNFSEFMPSVKTPERNINPFTIDEINKALDACMQE----------QH 206

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-----------KGDKIRIVPLLPS 205
             ++ LL   GLR  E   L  +++  +   L I+            K D+ R V L+P 
Sbjct: 207 KNMITLLAYTGLRTGEICGLAWEDVDFENKVLTIRRATFESRGLKTPKTDRERTVDLMPP 266

Query: 206 VRKAILE----------------------YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
             +A+                          D   F  N      L         +    
Sbjct: 267 ALEALQAQKKLSSHYPQKEHEVELADKTIRLDNIRFVFNPKATENLNAKTPYDYFSKTAP 326

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS-NGGDLRSIQSILGHFR 291
            +  R +    G+P     + LRH++A+ +LS    ++  +   +GH  
Sbjct: 327 NKMWRNICIRAGIPYR-NVYQLRHTYASWMLSYANVNIAYLAQQMGHSN 374


>gi|89147420|gb|ABD62570.1| integrase [uncultured bacterium]
          Length = 163

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/111 (34%), Positives = 53/111 (47%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +G G       L      A+ E+     F        P    +R   L+    QR ++  
Sbjct: 52  KGFGAVYLWPALERKYPSAVQEWIWQYVFPSGRLSVDPRSGKVRRHHLHEKALQRAVKDA 111

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              +GL    + H LRHSFATHLL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 112 SLKVGLTKQMSCHVLRHSFATHLLEGGYDIRTVQELLGHADVSTTMIYTHV 162


>gi|317472196|ref|ZP_07931525.1| phage integrase [Anaerostipes sp. 3_2_56FAA]
 gi|316900285|gb|EFV22270.1| phage integrase [Anaerostipes sp. 3_2_56FAA]
          Length = 396

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 105/298 (35%), Gaps = 38/298 (12%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           RQ+L  +     + + ++ I  +  ++ + +  +   +    +++      +K+      
Sbjct: 107 RQYL--MNALKNDPLGMRAIDTVKQSDAKEWAIRMSEKGYAYKTIDNYKRSLKASFYMAI 164

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           +     ++        K S+ L     +K  LT      L    E   I ++    + LL
Sbjct: 165 QDDCIRKNPFE----FKLSDVLEDDTEQKVILTPEQEERLLAFMEKDKIYSKYYDEVVLL 220

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVR 207
              GLRISE   LT  +I      L I                    +  R +PL     
Sbjct: 221 LETGLRISEFCGLTT-HIDMQNRILNIDHQLLKDSEMGYYIETPKTKNGKRELPLTERAY 279

Query: 208 KAILEYYDLCPFDLNL---NIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGL 256
           +AI            L        LF    G P        +  G+ ++Y +     L  
Sbjct: 280 QAIQRILKNRRKAQPLIVGGYSNFLFLNREGLPKVAGNYEGMVRGLIKKYNKYHTDKL-- 337

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
             + T H+ RH++ T++ + G +  ++Q ++GH  ++ T   Y +   ++    +  +
Sbjct: 338 -PNITPHSFRHTYCTNMANRGMNPNTLQYLMGHANITMTLGYYAHGTFQSAKAELERL 394


>gi|295841228|dbj|BAJ07009.1| integrase [uncultured bacterium]
          Length = 408

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 57/284 (20%), Positives = 104/284 (36%), Gaps = 60/284 (21%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           R  S  T ++Y    +++ +F      E         L+   ++AF+      +K+   +
Sbjct: 147 RQYSYRTAEAYVSWVKKYFLFHRQRPRE--------ALTPDGVKAFLEYLVLVRKVAAGT 198

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
            K++L+ +  F   +   ++    +    +  K   +LP  L+  +   ++         
Sbjct: 199 QKQALNALDFFFGEVLGLELGDLGDFARSKRPK---NLPVVLSRDETERVL--------- 246

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
               +D   +    LLYG GLR+ EAL L  +++  D S ++++ GKG + RI  L    
Sbjct: 247 --GALDGTTALAAGLLYGSGLRLMEALRLRVKDVDFDCSQIQVRDGKGKRDRITVLPERY 304

Query: 207 RKAI------------------------------------LEYYDLCPFDLNLNIQLPLF 230
            + +                                     ++     F  +     P  
Sbjct: 305 LEPLKAHLVRVKAVHESDLGQNYAGTTFWPSLGRKYPYAPRQWIWQYIFPSSRLAVDPQT 364

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                  L+  V QR ++      G+    T HTLRHSFATHLL
Sbjct: 365 GRSIRHHLHETVLQRAVKAAAARAGISKRVTCHTLRHSFATHLL 408


>gi|293374275|ref|ZP_06620603.1| site-specific recombinase, phage integrase family [Turicibacter
           sanguinis PC909]
 gi|292647108|gb|EFF65090.1| site-specific recombinase, phage integrase family [Turicibacter
           sanguinis PC909]
          Length = 374

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 61/332 (18%), Positives = 126/332 (37%), Gaps = 55/332 (16%)

Query: 11  SFELLKERQNWLQ-----NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
            + L +  Q W        L+ E      T+ +Y+C           +   +I    I++
Sbjct: 61  DYTLQEYIQYWFDTIAINYLKFE------TMHNYKC-------VATKHIYPEIGHLNIKK 107

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM--RNLKKSN 123
            + T ++ + S++      D  +    + + +  K   K+ I   + +  +  ++ K+  
Sbjct: 108 ATPTVLQKYFSEKLKTYNADSIVSIIRNILSNTFKLAVKQNILPRNPMAQIELKSQKQKE 167

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           +  R +N+      +DN+LL       +I         +    G R  E L LT  ++  
Sbjct: 168 TAMRVVNKND----IDNLLLEIKDTRYYIP------FIIAIHTGARRGEILGLTWDDVNF 217

Query: 184 DQSTLRIQG----------------KGDKIRIVPLLPSVRKAILEYYD------LCPFDL 221
           + +TL I                      +R V +  ++   + EY            + 
Sbjct: 218 ENNTLTINKILQYQQGNGLVLSSTKTSSSVRTVLMTSTLVHELQEYRKSQLLRKEYYGNH 277

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
             + Q  +     G P+NP    ++ +++ +  G       H LRH+ AT LL    +++
Sbjct: 278 YFSEQSFVCCNDDGSPINPLSLSQFTKKISQKYG--YRFRFHDLRHTHATMLLEADVNIK 335

Query: 282 SIQSILGHFRLSTT-QIYTNVNSKNGGDWMME 312
            IQ  LGH  + TT  +Y+++ +K   D + +
Sbjct: 336 VIQQRLGHENIKTTLNVYSHLTNKLDEDAINK 367


>gi|17488529|ref|NP_511007.1| integrase [Listeria phage 2389]
 gi|254932881|ref|ZP_05266240.1| integrase [Listeria monocytogenes HPB2262]
 gi|17402434|emb|CAC85582.1| integrase [Listeria phage PSA]
 gi|293584435|gb|EFF96467.1| integrase [Listeria monocytogenes HPB2262]
          Length = 384

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 115/292 (39%), Gaps = 37/292 (12%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T+  Y+    QF+ +     +EKI + +I  + Y   + FI+          ++   
Sbjct: 76  SQSTINLYDLAYNQFVDYF----DEKIKLNSIDAVQY---QQFINHLSVD-YAISTVDTR 127

Query: 92  LSGIKSFLKYLKKRKITTESNIL--NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
              I++            ++  +  ++     + +  + +   +   L++        E 
Sbjct: 128 HRKIRAIFNKAVHLGYMKKNPTIGAHISGQDVAKNKAQFMETDKVHLLLE--------EL 179

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-------------KGDK 196
               + + A+++L    G+R  E ++LT ++I   + ++ +               K  K
Sbjct: 180 AKFHSISRAVIFLAVQTGMRFEEIIALTKKDINFTKRSITVNKAWDYKYTNTFIDTKTKK 239

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLN----LNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
            R++ +  S  + +  Y +     +      N  + LF     KP++     + ++++  
Sbjct: 240 SRVIYIDNSTAQYLHSYLNWHTDYMKEHAIKNPLMLLFITYHNKPVDNASCNKALKKICS 299

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
            +      T H LRH+     +  G D+  +   LGH  ++TT + Y++++S
Sbjct: 300 TIN-SEPVTLHKLRHTHTGLCVEAGMDIIYVADRLGHDDINTTLKYYSHLSS 350


>gi|326692848|ref|ZP_08229853.1| prophage Lp2 protein 2, integrase [Leuconostoc argentinum KCTC
           3773]
          Length = 355

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 112/312 (35%), Gaps = 31/312 (9%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
             +  ++W  ++  E  L   T Q Y+              +EK   + + +L+  + + 
Sbjct: 60  FTEAFEDW-YHVFKEPQLETATKQWYKRTLSLL--------KEKWDGKKLSELTSKDFQK 110

Query: 74  FISKRRTQKI--GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN---LKKSNSLPRA 128
            I+   +  +      +K   S    F++Y        +    N++    +K  +   + 
Sbjct: 111 LINDYGSDHVLSSVSHIKNITSA---FIRYAVDEDFIKKDFTRNVKTYSVVKSKDKQLKF 167

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L  ++   L+ ++  + +  ++        ++      G+R SE   LT ++   +++ +
Sbjct: 168 LEAEEMENLILSIKDNEAATSR--------MILTAIYSGMRFSEVAGLTLEDFDFEKNVI 219

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPF-DLNLNIQL---PLFRGIRGKPLNPGVFQ 244
            +                + +         F D+           F    G P       
Sbjct: 220 NVNKSWQIHDQKFKNTKTQTSNRIIVMPKVFMDIAKKWTFGNEFAFESDNGTPPTDNAAN 279

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
           + +R+    +      T H LRH+ A++LL+N   ++ +   LGH  ++ T   Y ++ +
Sbjct: 280 KQLRRYLEKIN-SKIITFHGLRHTHASYLLANDLAIQFVSERLGHADVNITLSTYAHLLN 338

Query: 304 KNGGDWMMEIYD 315
           K   +   ++ D
Sbjct: 339 KKRTEETNKMLD 350


>gi|262381977|ref|ZP_06075115.1| integrase/site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|301310515|ref|ZP_07216454.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|262297154|gb|EEY85084.1| integrase/site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|300832089|gb|EFK62720.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 310

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/298 (16%), Positives = 95/298 (31%), Gaps = 40/298 (13%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + ++  L  E+  S    +SY+     F+ +                ++   +R + +  
Sbjct: 11  REYIAQLNREKRYSSA--KSYQDALNSFIRYSGT------DCIAYSAINKDNLRRYEAYL 62

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL------NMRNLKKSNSLPRALNEK 132
                   ++   +  ++       +         L       + + K+  SLP     +
Sbjct: 63  LENGCMRNTISTYMRRLRCIYNKAVENGKAEFIPTLFKGIFTGVES-KRKKSLP----IE 117

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               L+   +         +       L  L+G G+   +   L   NI +       Q 
Sbjct: 118 DLHRLMTVPVEDGKQRKTQLALC----LMFLFG-GMSFVDFAHLKTGNIKNGILDYNRQK 172

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG----------V 242
            G  +R+  L  +      E          +     LF  + G                 
Sbjct: 173 TGTPMRLEILETA------ETMYKELSGEKVRDSGYLFPFLSGTREGREEYLEYNAALFR 226

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           F R ++ L+ + G+    T++T+RHSFA  L      +  I  +LGH  + TTQIY  
Sbjct: 227 FNRNLKALKEFAGITSDVTSYTIRHSFAMTLKEQNVPIEMISELLGHKSIKTTQIYLR 284


>gi|164687445|ref|ZP_02211473.1| hypothetical protein CLOBAR_01086 [Clostridium bartlettii DSM
           16795]
 gi|164603219|gb|EDQ96684.1| hypothetical protein CLOBAR_01086 [Clostridium bartlettii DSM
           16795]
          Length = 422

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 105/298 (35%), Gaps = 38/298 (12%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           RQ+L  +     + + ++ I  +  ++ + +  +   +    +++      +K+      
Sbjct: 133 RQYL--MNALKNDPLGMRAIDTVKQSDAKEWAIRMSEKGYAYKTIDNYKRSLKASFYMAI 190

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           +     ++        K S+ L     +K  LT      L    E   I ++    + LL
Sbjct: 191 QDDCIRKNPFE----FKLSDVLEDDTEQKVILTPEQEERLLAFMEKDKIYSKYYDEVVLL 246

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVR 207
              GLRISE   LT  +I      L I                    +  R +PL     
Sbjct: 247 LETGLRISEFCGLTT-HIDMQNRILNIDHQLLKDSEIGYYIETPKTKNGKRELPLTERAY 305

Query: 208 KAILEYYDLC---PFDLNLNIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGL 256
           +AI             +       LF    G P        +  G+ ++Y +     L  
Sbjct: 306 QAIQRILKNRGKAQPLIVGGYSNFLFLNREGLPKVAGNYEGMVRGLIKKYNKYHTDKL-- 363

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
             + T H+ RH++ T++ + G +  ++Q ++GH  ++ T   Y +   ++    +  +
Sbjct: 364 -PNITPHSFRHTYCTNMANRGMNPNTLQYLMGHANITMTLGYYAHGTFQSAKAELERL 420


>gi|227326878|ref|ZP_03830902.1| putative integrase [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 325

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 95/234 (40%), Gaps = 29/234 (12%)

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALT 136
           R  + + + ++ R  S + +    LK+      ++ +  +R  K+S+S    L       
Sbjct: 109 RFDKPVKESTINREHSYLSAVFNELKRLGEWQGDNPLDGIRQYKESDSELAFLYHDDIRL 168

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           +++     ++ +          ++ +    G R SEA  L    ++  + T  I  KG +
Sbjct: 169 ILNECDASSNPDLGS-------VVRICLATGARWSEAQELKQSQLVPYRVT-YINTKGKR 220

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R VP+ P + + +                 P  RG    P     F++ ++  R  + L
Sbjct: 221 NRTVPISPELYQLL-----------------PRRRGQLFSPC-YDAFRQALK--RSQIDL 260

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           P     H LRH+FA+H + NGG++  ++ ILGH  +  T  Y +    +    +
Sbjct: 261 PEGQLTHVLRHTFASHFMMNGGNILVLKDILGHTSIQMTMRYAHFAPDHLDAAV 314


>gi|89147396|gb|ABD62558.1| integrase [uncultured bacterium]
          Length = 163

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 44/91 (48%)

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            E+     F        P     +   +     Q+ ++   R  G+    + HT RHSFA
Sbjct: 72  REWGWQYVFPAIKRSLDPRTGREQRHHIAETALQKAVKSAIRAAGISKPGSCHTFRHSFA 131

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           THLL  G D+R+IQ +LGH  + TT IYT+V
Sbjct: 132 THLLEAGYDIRTIQELLGHADVQTTMIYTHV 162


>gi|298375519|ref|ZP_06985476.1| mobilizable transposon, int protein [Bacteroides sp. 3_1_19]
 gi|298268019|gb|EFI09675.1| mobilizable transposon, int protein [Bacteroides sp. 3_1_19]
          Length = 347

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 88/251 (35%), Gaps = 32/251 (12%)

Query: 71  IRAFISKRRTQKIGDRSLKR-----SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
            R ++   +  K  +R +         S  +  LK   + K   E+    +  ++  +  
Sbjct: 118 FREYLLNAKQLKHSNRPISLNSASGYYSTFRGLLKIAYRDKWLRENINDYLDKIEPQDVK 177

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--- 182
              L   +   L           T        A        GLRIS+ L+L  ++     
Sbjct: 178 KEYLTLDEVKQL---------AATPCDIPVLKAASLFACLTGLRISDILNLQWEDFAIAP 228

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           D    LRI+ +  +           +A L           +     +F+G     L   +
Sbjct: 229 DQGYCLRIRTQKTQT----------EATLPISYEAYELCGMPDTGKVFKG-----LKRSM 273

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               ++   +  G+    T H  RHS+A   +S G D+ ++  +L H  +STTQIY ++ 
Sbjct: 274 INYPLKNWLKKAGITKPITFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLV 333

Query: 303 SKNGGDWMMEI 313
           +    +   +I
Sbjct: 334 NVKKRETANKI 344


>gi|327404978|ref|YP_004345816.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327320486|gb|AEA44978.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 419

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 53/290 (18%), Positives = 103/290 (35%), Gaps = 22/290 (7%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSLKR 90
           S  TL  Y+    + + ++      K++   + +L    I  F     T  +I   +  +
Sbjct: 134 SPKTLMRYQITKNKVVAYMERKF--KLSDMPLHELRLAFITEFEHHLLTVDRIQSNTAHK 191

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +  +K  +           +     +    S        +++ L   +  +L     + 
Sbjct: 192 YIKNLKKIMNMAVGLDWIPSNPFNLFKCSYVS-------TDREILNQDELEVLRLKPISV 244

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVR 207
                   +       G   S+        ++   D +  L    +    R    L  + 
Sbjct: 245 QRLVEVRDVFVFCCYTGFAYSDVYQFQHDAVIVGLDKEYWLSTNRQKTGTRESVPLLPIP 304

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             I+E Y    + +  N  LP+    R        +  Y+++L    G+    T H  RH
Sbjct: 305 LQIIEKYKNDEYCIKSNKLLPVNSNQR--------YNSYLKELADICGIKKHLTTHIARH 356

Query: 268 SFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +FAT + L+NG  + ++ S+LGH  + TTQ+Y  V  K   D M  + D+
Sbjct: 357 TFATTVTLANGVPIETVSSMLGHKSIRTTQVYAKVVEKKVSDDMKTLRDK 406


>gi|300071713|gb|ADJ61113.1| phage integrase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 393

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 53/292 (18%), Positives = 117/292 (40%), Gaps = 28/292 (9%)

Query: 33  KLTLQSYECDTRQF-LIFLAFYTEEKITIQTIRQLSYTEIR----AFISKRRTQKIGDRS 87
             T++      + + L  L  Y  EKIT   ++ +     R    A I     +K   + 
Sbjct: 88  ANTIRINSNFLKNYILPALGNYKVEKITTVLLQNIVNDWARNANTAEIVNGNREKGKSKD 147

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLK---KSNSLPRALNEKQALTLVDNVLLH 144
            K  L+ IK  L Y  +  + +++  + + + K   ++    +  N  +    +D +   
Sbjct: 148 YKLLLNIIKRILDYGMQLGVISDNPAIKVFSPKLKTRTVKKIKYFNNDELKRFLDYLD-- 205

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------- 193
            S ++   + +++ +  LL   GLRI EAL+L+  +I    +T+ +              
Sbjct: 206 -SLQSTTANIKSTTLYKLLLATGLRICEALALSWSDIDFVNNTVSVSKTLIQYSNEIQDS 264

Query: 194 ---GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
               +  R+V +       + E+     +         +F   +       + ++++ + 
Sbjct: 265 AKTKESNRLVSVDSETISMLKEWRKHQNYGAISLHDSLVFSYHQKMR-TYELERQHLVRH 323

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNV 301
            +   +P +   H  RH+ A+ L++N  + + IQ  LGH   S T  +Y+++
Sbjct: 324 FKKAKVP-NIGFHGFRHTHASLLMNNDVNPKEIQMRLGHADYSITMNLYSHL 374


>gi|266619164|ref|ZP_06112099.1| site-specific recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
 gi|288869310|gb|EFD01609.1| site-specific recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
          Length = 402

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 64/350 (18%), Positives = 122/350 (34%), Gaps = 73/350 (20%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + WL  L     +S  T+++Y  D R ++I       + +    + +++  +IR  +   
Sbjct: 72  EKWL--LMQSAKVSSATMKAYTSDMRNYII-------KPLGDMYMEEVTADDIRLALVPL 122

Query: 79  --RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK-KSNSLPRALNEKQAL 135
             +++ + + ++   +  I  F    +   + T +  + +     K      AL ++Q  
Sbjct: 123 TNKSEGLYN-TVNMLIKCI--FYSAERSE-LITYNPCVGISAKGGKPTKKKDALTDQQVE 178

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGK 193
            L+D V                  + +    GLR  EAL L    +  D  T  + ++  
Sbjct: 179 VLLDTVKGLPP----------YLFIMICLYSGLRREEALGLHWDCVFLDAPTPYISVRRA 228

Query: 194 GDKIRIVPLLPSVRKA--------ILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQ 244
                  P++ +V K         I +    C  +   N I   +    +G+PL    FQ
Sbjct: 229 WRSEHNRPVVSTVLKTPAAKRDIPIPKCLVDCLREAKENSISDYVIADSKGEPLAYSQFQ 288

Query: 245 RYI----------RQLRRYLG-------------------------LPLSTTAHTLRHSF 269
           R            R   +Y+                          +    T H LRH++
Sbjct: 289 RVWQYVVVRSTKPRNYYKYVNGESIKYTVTPTLGMTQKNQPKIKYTIDFDVTPHQLRHTY 348

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQTH 318
            T+LL  G + +++Q + GH    TT  IY  V      +    + D  H
Sbjct: 349 ITNLLYAGVNPKTVQYLAGHENSKTTMDIYAKVKYNKPEELFEVVNDALH 398


>gi|148615572|gb|ABQ96615.1| IntI1 [Salmonella enterica subsp. enterica serovar Virchow]
          Length = 167

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 78/186 (41%), Gaps = 27/186 (14%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVHWARAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTLRI 190
             T+ +
Sbjct: 162 HGTIIV 167


>gi|31616157|gb|AAP55251.1| integrase protein [Staphylococcus aureus]
          Length = 378

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 53/320 (16%), Positives = 109/320 (34%), Gaps = 42/320 (13%)

Query: 24  NLEIERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           +L +E+   K T++  +Y+     F         E     +I+ ++    +  I+K   +
Sbjct: 72  DLWLEQY--KHTVRESTYQRVVTLF----NTAILEHFNNVSIKSITIPYCQRVINKWNDK 125

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
               ++++   S +    +Y    KI TE+   + +  +K  +      ++ +       
Sbjct: 126 YKDMKAIRIYTSNV---FEYDVNLKIITENPFKHTKQPRKKET-----PQEDSYVYYSRD 177

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG------- 194
            L T       +  + AI   L   G R  E ++LT  +I  ++ T+ I           
Sbjct: 178 ELQTFLSFVEGNLVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGNNYK 237

Query: 195 ---------DKIRIVPLLPSVRKAILEYYDLCPFDL------NLNIQLPLFRGIR-GKPL 238
                       R + +       + ++      +        L     +F  +   K L
Sbjct: 238 PIIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNVSTNKRL 297

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-I 297
            P    + +  + +          H  RH   + L   G  ++ +Q  LGH  + TT  I
Sbjct: 298 YPEYCNKVLANVCKKHNF-KQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIKTTMDI 356

Query: 298 YTNVNSKNGGDWMMEIYDQT 317
           Y +V  K   D + E +   
Sbjct: 357 YAHVTEKQ-RDQVAEKFANY 375


>gi|283455539|ref|YP_003360103.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium dentium
           Bd1]
 gi|283102173|gb|ADB09279.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium dentium
           Bd1]
          Length = 367

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 111/303 (36%), Gaps = 41/303 (13%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
            L  + G ++ T+ +Y    R+++         ++   TI + +   ++ F+        
Sbjct: 58  WLATQTGKAENTINAYTNAYRKYVS--------RLDSLTIAEATPLVLQTFLDG-VAGGS 108

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
           G  ++      +   ++    +     + + +++ + +      A+   +    +     
Sbjct: 109 GSATVSMVKLVLSGMMEMAVAQGAILHNPVRDLKRMSRHREGSVAIPADKVQKFL----- 163

Query: 144 HTSHETKWIDARNSA-ILYLLYGCGLRISEALSLTPQNIMDDQST-------LRIQGKGD 195
                 +W+ + + A I+ L+   GLR+ EA  L    +     T       +R +G+G 
Sbjct: 164 KAVETNEWLVSHDEADIIRLMLYTGLRVGEACGLCWDCVDFTAGTLSVERIAIRCKGEGM 223

Query: 196 KIRIVPLLPS------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN---------- 239
            ++  P            K+I+   +L    L+          +  +PL+          
Sbjct: 224 TLQAHPKTEHSRRTITAPKSIMHMLELRRISLDTGGIPNPHNLVFPRPLSGGSCEYLVRS 283

Query: 240 PGVFQRYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ- 296
           P V    +R+ R  LG       + H+LR + A+ L   G +   +   LGH   +TT+ 
Sbjct: 284 PNVVASDLRREREALGFGKGESLSPHSLRKTCASLLHDAGLNTLDVADYLGHSDTATTEN 343

Query: 297 IYT 299
           +Y 
Sbjct: 344 VYI 346


>gi|256824531|ref|YP_003148491.1| site-specific recombinase XerD [Kytococcus sedentarius DSM 20547]
 gi|256687924|gb|ACV05726.1| site-specific recombinase XerD [Kytococcus sedentarius DSM 20547]
          Length = 373

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/329 (17%), Positives = 103/329 (31%), Gaps = 49/329 (14%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR--TQKIGDR 86
           R L+  T+Q+     R+F  F      E          +  ++  + ++     +     
Sbjct: 44  RMLNPKTIQARLAQVRRFTGFCGNLPWE---------WAPADVEEWTTELVSGDKPCSHG 94

Query: 87  SLKRSLSGIKSFLKYLKKRK-----------------ITTESNILNMRNLKKSNSLPRAL 129
           +++   + +  F  +L  R+                 I  E N        ++    R L
Sbjct: 95  TIRSYQNAVALFCDFLTDRRYGWIERCEELFGTHPVQICHEWNTAIHTGDHETRPAVRPL 154

Query: 130 NEKQALTLVDNVLLHTSHETKWID------ARNSAILYLLYGCGLRISEALSLTPQNI-- 181
           +  +  T  D                     R++ +  ++Y  GLR  E   L   +   
Sbjct: 155 SRSEVQTFFDYADDRVDQARTRGKKGWKSVFRDATLFKMIYAFGLRRREVGMLDLHDFTR 214

Query: 182 ------MDDQSTLRIQG----KGDKIRIVPL---LPSVRKAILEYYDLCPFDLNLNIQLP 228
                         ++     +G + R   +       R  I EY        ++     
Sbjct: 215 NPTATEFGRFGVCNVRWAKASRGSQPRRRAVLAVFDWTRPVIEEYVTDVLPLFDVADAAM 274

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           L+   R   +          + R  LG   +   H LRHS+ THL+ +G D   +Q  +G
Sbjct: 275 LWPTERQSRITGSYIGMRFAEYRDDLGFDAALHPHCLRHSYVTHLIEDGFDPLFVQQQVG 334

Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           H   STT +YT V+       +    D  
Sbjct: 335 HRWGSTTALYTGVSGDYRNRTLRRALDAA 363


>gi|330937767|gb|EGH41639.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 390

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/333 (16%), Positives = 109/333 (32%), Gaps = 77/333 (23%)

Query: 41  CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-----TQKIGDRSLKRSLSGI 95
                +  FL  +          R +   E +  ++  R     T ++   + ++ L+ I
Sbjct: 67  RALYDYFSFLEAHD------LDWRDVDRGEAKTLVAAYRDYCMVTCELARSTTRQRLTYI 120

Query: 96  KSFLKYLKKRKITTESNI-------------------------LNMRNLKKSNSLPRALN 130
             F ++  ++                                 +N    ++   LP+ ++
Sbjct: 121 CKFYEFALEKGWVKRLPFGHEERTVNREESFLEHVDDSGGKALVNDVMPRRHKLLPKFMS 180

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ---NIMDDQST 187
             Q  +L+              +  +  ++ L    GLR +E  +   +   +    + T
Sbjct: 181 MAQTKSLL----------AAAENPHHRMMIRLALHTGLRRNELATFPAEYVFDPDKARRT 230

Query: 188 ---LRIQ----------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRG 232
              LRI+           KG K R + +       +  Y      +       Q  L   
Sbjct: 231 ERNLRIKLDPRDGSGMETKGSKERYIWVSRKFMSELYRYVSKVRGERASLGKNQKALLLN 290

Query: 233 IRGKPLNPG--VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL-------SNGGD-LRS 282
             G+P         R I +     G+      H LRH++ATH L        NG D L  
Sbjct: 291 HLGEPYGSAGKSLNRIISEAGERAGIE--VHTHMLRHTYATHTLVNLQRTPQNGLDPLVF 348

Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +Q  LGH  + TT +Y ++ ++   + ++  YD
Sbjct: 349 LQRQLGHSSIQTTMVYLHLINEMADEAVL-AYD 380


>gi|150008748|ref|YP_001303491.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149937172|gb|ABR43869.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 406

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 88/256 (34%), Gaps = 19/256 (7%)

Query: 57  KITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           + T  ++ +L+   I+ F +     + + + ++  +   +K  +       +   +    
Sbjct: 152 RRTDMSMLELTPDFIKEFAAYLTAERGLKNATIWLNCMWLKGVVMRAHYNGLIPRNPFAQ 211

Query: 116 MR-NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
              +          L E +   ++     H          R+  I        L   +  
Sbjct: 212 FHISPNVKER--EYLTEDEIKRIM----AHEFDNPTLALVRDLFIFACF--TALSFVDMK 263

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
            LT   I++      I  K    R    +P   K +     +      L+    +F    
Sbjct: 264 ELTTDEIVEVNGEKWILSK----RHKTNVPFQVKLLDIPLQIIERYKYLSEDKLVF---- 315

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              +N     + ++++    G+    + H  RH+F T  LS G  + S+  +LGH  + T
Sbjct: 316 -GKINYWTMCKQLKKVMAECGIEKQISYHCARHTFGTLALSKGMPIESVSRVLGHTNIVT 374

Query: 295 TQIYTNVNSKNGGDWM 310
           TQIY  + ++   + +
Sbjct: 375 TQIYAKITTQKLDNDL 390


>gi|20090544|ref|NP_616619.1| phage integrase [Methanosarcina acetivorans C2A]
 gi|19915573|gb|AAM05099.1| phage integrase [Methanosarcina acetivorans C2A]
          Length = 373

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 112/281 (39%), Gaps = 36/281 (12%)

Query: 48  IFLAFYTEEKITIQTIRQLSYTEIRAFISKRR---------TQKIGDRSLKRSLSGIKSF 98
            F+ +  +E    + +   S  ++  ++ +            +K  + +  R+   ++ F
Sbjct: 33  HFIEWCDKEG---KLLESFSEDDVFDYLDELEKHTFKQKGVEKKYSEFTKARNRIQVRKF 89

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNS 157
           L ++             +R  K +N LP     +++   ++D             + R+S
Sbjct: 90  LSFVNP--YLKT--TFKIRKPK-NNKLPEDIFTKEEVEAMIDTC----------QNPRDS 134

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYY 214
           AI+   Y  G R  E L++  +NI+ D+  + +    GK    RI  +       + ++ 
Sbjct: 135 AIVATFYESGARKGELLAVRIRNIVFDEFGVVVNITEGKTGSRRIRLVF--AASYLRQWL 192

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-STTAHTLRHSFATHL 273
           D  P   N +  +          L+       ++++ +  G+P+     H  RH+ ATHL
Sbjct: 193 DCHPLKDNRDAFVFCSLRSPFGKLSNTGIHDQLKEIGKRAGIPVEKLHPHNFRHTRATHL 252

Query: 274 LSNGGDLRSIQSILGH-FRLSTTQIYTNVNSKNGGDWMMEI 313
             +  +   ++  +G     + T IYT+++ ++  + ++ +
Sbjct: 253 SEHLTE-AQLKEYMGWTKSSTMTSIYTHLSGRDIDNSILRL 292


>gi|256841348|ref|ZP_05546855.1| integrase [Parabacteroides sp. D13]
 gi|256737191|gb|EEU50518.1| integrase [Parabacteroides sp. D13]
          Length = 407

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 94/287 (32%), Gaps = 19/287 (6%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIG 84
            + +  +K T   Y    +    F+ +    K +  ++ +L+   IR +    +    + 
Sbjct: 122 RVGKDRAKNTYNKYLVVRKYVAEFIKYQY--KRSDMSMNELTEEFIRDYCLYLKNVVGLA 179

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S+      +K  +           +    M ++   +     L   +   + D  L  
Sbjct: 180 QSSIWIYSIPLKHIVTAAHYNGKIPRNPFA-MYHVDPDHKEREFLTLDELTAMTDIKL-- 236

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
                    A    +       G+   +  +LT  NI    S   I  K    R    +P
Sbjct: 237 ----EDPNMAFARDLFIFGCWTGISFIDIKNLTEDNISMVNSAPWIVSK----RQKTGVP 288

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
              K +     +     +      LF       +N     + I+++    G+    + H 
Sbjct: 289 FQIKLMDIPMQIVERYKSFRKGNHLFNIGNLDGIN-----KRIKKVAVMCGIKKRVSFHV 343

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            RHS+A   L  G  + S+  ILGH  ++TTQIY  V S      + 
Sbjct: 344 SRHSWAVLALEYGMPIESVSKILGHTNITTTQIYAKVTSTKLDHDIA 390


>gi|146301412|ref|YP_001196003.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146155830|gb|ABQ06684.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 291

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 68/309 (22%), Positives = 113/309 (36%), Gaps = 28/309 (9%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           + +N+L+ +  E+     T QSY      FL           T    ++  Y +I  ++ 
Sbjct: 7   DLENYLRGIVAEK-----TAQSYLYTINHFLK----------TNPKAKRYQYKDIVKYMD 51

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           K   ++   +   R LS IK +  YL       +     +    K N   +   +     
Sbjct: 52  KISQKQSNVQYRIRILSAIKKYYDYLVMYGYRNDHPCRKLNIKIKGNQTIQV--QDLFNR 109

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD- 195
               +L+   +  K +D RN+ ++ LL   GL   E   L  ++I  D  T+ I+G  + 
Sbjct: 110 TELQLLMERENRYKHLDMRNNVLISLLIYQGLASDEIARLAVKDIDLDNGTVYIKGSANL 169

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
             R + L+P        Y +     L             G+P+        I  LR   G
Sbjct: 170 NKRTLELVPKQMILFHNYINETRPALLRGSSDKFILTKLGQPIVVNSIHAMIEPLR---G 226

Query: 256 L--PLSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           L         T+R S   + L      L  +Q + GH    TT+ Y  VNS +      E
Sbjct: 227 LFPDRKLNPQTIRMSVICNWLNEKNISLERVQELAGHKWPGTTEKYIKVNSSHQ----RE 282

Query: 313 IYDQTHPSI 321
           + ++  PSI
Sbjct: 283 LINRYFPSI 291


>gi|77918422|ref|YP_356237.1| site-specific recombinase/integrase [Pelobacter carbinolicus DSM
           2380]
 gi|77544505|gb|ABA88067.1| site-specific recombinase/integrase [Pelobacter carbinolicus DSM
           2380]
          Length = 482

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/310 (17%), Positives = 114/310 (36%), Gaps = 38/310 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L++       +K T +S++ D  +    L      K     +  L+  EI+ ++++ 
Sbjct: 199 RKYLEH-------AKQTKKSWKDDYNK----LTNQIIPKWGEVPLTCLTPKEIQGYLNQV 247

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITT--ESNILNMRNLKKSNSLPRALNEKQALT 136
           + +     +  R  + +        K       ++ +  +   + +    R L+ ++   
Sbjct: 248 KART-SGTNANRHYAVLNVLYNLAVKWGEIDPWKNPMPGVSKFRDNPGRTRYLSMEECKR 306

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195
            +   L     +      R           G R  E L    +++  +  T+ + + K  
Sbjct: 307 FL-AALEEAPGQLAACALRLLLF------TGCRAGEVLKSKWEDVSMEGRTMLLPETKNG 359

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYL 254
           K R+V L       I +       D        LF G    KPL  G  ++      +  
Sbjct: 360 KSRVVHLNSLSLAEIEKL-----KDFRNPSNPYLFPGSSEDKPL--GTVRKTFEHALKLA 412

Query: 255 GLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN-------SKNG 306
           GL       HTLRH+ A+ L + G  L +I+  LGH  +  T+ Y +++       S + 
Sbjct: 413 GLQGTDVVIHTLRHTHASLLANLGESLETIKVSLGHSSVKMTERYAHISGSKTKDASDHL 472

Query: 307 GDWMMEIYDQ 316
            + + E+ +Q
Sbjct: 473 AEQLKEVMNQ 482


>gi|302346774|ref|YP_003815072.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302150769|gb|ADK97030.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 406

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 62/319 (19%), Positives = 130/319 (40%), Gaps = 31/319 (9%)

Query: 14  LLKERQNWL----QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLS 67
           LL+    +L    + + I+R L    L++Y+      L  L  Y ++K  +  I   QL 
Sbjct: 110 LLESFGEYLTQTKERIGIDRALKTFKLRTYQ------LSLLREYVQKKHKVSDIPLSQLD 163

Query: 68  YTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
            + I  F       +++   S+  +LS +++ ++   K+        L   + ++    P
Sbjct: 164 KSFIEGFEYYLTIDRRLKRSSISSTLSTLQTIVRIAVKKGALDFYPFLGY-SYERPKGEP 222

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R++ +++   +++  +   ++           +       GL IS+  +L  +NI+ ++ 
Sbjct: 223 RSITQEELERIIELKIEWKNYRIV------RDLFVFSCFSGLAISDVRNLREENIVLEEG 276

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            L I+G+  K +    +  +  A                 +P             V    
Sbjct: 277 ELCIKGRRMKTKTPYRVQVLPPAQTIMNRYRGIRAGFVFDVP----------TTDVILNG 326

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +  ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQ+Y  V+S+ 
Sbjct: 327 MHYIQRNIGMKTPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSER 386

Query: 306 GGDWMMEIYDQTHPSITQK 324
               M  +  +   + T K
Sbjct: 387 IHRDMQIVQQRIQDTFTLK 405


>gi|195661224|ref|YP_002117692.1| integrase [Lactobacillus phage Lrm1]
 gi|166200938|gb|ABY84325.1| integrase [Lactobacillus phage Lrm1]
          Length = 375

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/320 (17%), Positives = 122/320 (38%), Gaps = 35/320 (10%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L+     W++  +  +  S++T   Y+   +Q L +     E       ++ +S ++ + 
Sbjct: 62  LIDYWDKWIELYKSGKH-SRITEARYKTIRKQLLAYWGESRE-------LKSISKSDWQG 113

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNE 131
           FI++   +K    ++ +    ++S        +I   +   N+     +    + + L  
Sbjct: 114 FINEF-GKKRAKDTVSKLNGYVRSMADSAVDDQIIYTNFTHNVVLTGNEGQAGIIKYLQV 172

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           K    LV+  L    +     D     I+      G R SE L LT  ++   +  + I 
Sbjct: 173 KDLRKLVNYCLEFADY-----DHIAYYIIATGALTGARYSEVLGLTWDHVDLKKRVVHIT 227

Query: 192 GKGDK--------------IRIVPLLPSVRKAIL----EYYDLCPFDLNLNIQLPLFRGI 233
              D               +R + +   +   +L    E  ++       + +  LFR I
Sbjct: 228 RTWDHRYGSGFAATKNKSSVRDIDITRELADLLLRLKKEQQEVYLAQGYRDSKQLLFRSI 287

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   L+     + +R + + L +  + T H LRH+  ++L++N  D+  I   LGH    
Sbjct: 288 RHNMLSSTAINKDLRTIEKTLDISPAITFHGLRHTHVSYLIANHVDINYISKRLGHANTM 347

Query: 294 TTQ-IYTNVNSKNGGDWMME 312
            TQ +Y ++      + + +
Sbjct: 348 ITQKVYAHLLEDQKKEQVSQ 367


>gi|86738837|ref|YP_479237.1| phage integrase [Frankia sp. CcI3]
 gi|86565699|gb|ABD09508.1| phage integrase [Frankia sp. CcI3]
          Length = 431

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 64/333 (19%), Positives = 117/333 (35%), Gaps = 67/333 (20%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR------------- 79
             T+Q YE   R +LI         I  + + +L+  ++R  + + R             
Sbjct: 115 PRTVQGYEVIVRNYLI-------PAIGKKRLNKLNGVDVRNLLKRVRGTCLCCLHGTDRR 167

Query: 80  ---------------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
                           Q    R +++  S +++ L    + ++   +     +    +  
Sbjct: 168 RPVKQRRCCAVGRCCHQAPSARLVQQVHSVLRNVLGAAVREELVGRNVAKLAKVSGPTYK 227

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           + R L+  QA  L+                R  A+  L    GLR  E L L  ++I  +
Sbjct: 228 VHRGLSADQASHLLKA----------AAHDRLYALYVLALYLGLRRGEILGLRWEDIDFE 277

Query: 185 QSTLRIQG---------------KGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLN 224
             TL ++                     R +PLLP + K + E+      +    D+N  
Sbjct: 278 DETLAVRHSLQRVGGHLRVVAPKTRTSERTLPLLPLIAKVLREHQARQDAERETADVNWR 337

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
               +F    G P+ P   +R    L   LGL      H +RH+  T LL+ G     ++
Sbjct: 338 ETGFVFTTAIGTPIEPDNLRRSWLPLCGVLGLE-GVRFHDIRHTCVTLLLNAGVPPHVVR 396

Query: 285 SILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQ 316
            I GH  +  T  IY + +  +    + ++ D+
Sbjct: 397 EIAGHSAIDVTMEIYAHASLDDKRAALQKLVDE 429


>gi|324115014|gb|EGC08979.1| phage integrase [Escherichia fergusonii B253]
          Length = 395

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/275 (19%), Positives = 113/275 (41%), Gaps = 24/275 (8%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           +S+  D +++   +     +++    +  ++   I   + +  +  +   +  R +  IK
Sbjct: 125 RSWGKDVQRYRDHIRPAIGQRL----LSDITPASILR-LQQTLSTSLSAATCNRVIVLIK 179

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
           +   +  ++ +T+      ++ L+++N+  R   E +   +     L   ++T  + AR 
Sbjct: 180 AVFTWAGRQSMTSVHPARVVQLLRENNARQRYFTEDEIRRIF----LSADNDTSPVAARY 235

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYD 215
              + LL   GLR  E      +++   + TL + + K    RIV L       I     
Sbjct: 236 ---VKLLLLTGLRRDELRLAKWEHVDPVKRTLWLPETKNGYGRIVHLNSLAMDVIRTLPT 292

Query: 216 LCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHL 273
                        LF G +   PL+  V  +  +++ R  G+       HT RHS A  +
Sbjct: 293 QR-------GNPWLFIGKKQGMPLSNPV--KAFQRIVRRAGIFDKEVCIHTCRHSVAALI 343

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +S GG L  +Q+ LGH    ++Q Y +++ +   +
Sbjct: 344 VSYGGTLYDVQAQLGHRSSQSSQRYAHLHPQRLQN 378


>gi|223369816|gb|ACM88777.1| integrase [uncultured bacterium]
          Length = 163

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 53/110 (48%)

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G GD      +     +A  ++     F        P    IR   +   V  R ++Q  
Sbjct: 53  GYGDVELPDAIARKYPRAAHDWGWKFVFPAYRYSADPRTGVIRRHHVYEDVLIRAVKQAA 112

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R   +    + HTLRHSFATHLL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 113 RAADINKHVSCHTLRHSFATHLLEGGYDIRTVQELLGHADVSTTMIYTHV 162


>gi|284023378|ref|ZP_06377776.1| putative integrase [Staphylococcus aureus subsp. aureus 132]
          Length = 404

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/288 (20%), Positives = 110/288 (38%), Gaps = 38/288 (13%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKK 121
           I ++++T ++  I     +      ++  +  I+S  KY  K   +   S +  +   KK
Sbjct: 113 ISKITHTYLQN-IINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKK 171

Query: 122 SNSLPR-------ALNEKQALTLVDNVLLHTSHETKWIDARNS----AILYLLYGCGLRI 170
           + +           L + +   L+        H+      RN     A++      G+RI
Sbjct: 172 AQTRNELQAKRNNYLEDSEVKELLQCFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRI 231

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKI--------------------RIVPLLPS----V 206
            E L++   N+  +  TL I G  + +                    R + L       +
Sbjct: 232 GELLAIKTDNVDVENKTLEIDGTINWVTDVETGAFGVKETTKTSKSYRTIGLTAQSINLL 291

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           +K +LE      ++     +  +F    G P++       I++      +    T HTLR
Sbjct: 292 KKLMLENKKENQWNDKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLR 351

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           H+  + L   G +L++IQ  +GH    TT +IYT+V  K   D M ++
Sbjct: 352 HTHISTLAQLGINLKAIQDRVGHSDYKTTLEIYTHVTDKMAQDMMNKL 399


>gi|146310998|ref|YP_001176072.1| phage integrase family protein [Enterobacter sp. 638]
 gi|145317874|gb|ABP60021.1| phage integrase family protein [Enterobacter sp. 638]
          Length = 339

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 94/240 (39%), Gaps = 33/240 (13%)

Query: 74  FISKRRTQKIGDRSLKR---SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           + S++  +     ++      LSG+  F +  +  + T  + + NMR    +      L 
Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSGV--FSELARLGEWTAPNPLENMRKFTIAEKEMAWLT 176

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            +Q   L+ +            +   + ++ +    G R  EA++LT   +   + T  +
Sbjct: 177 HEQITELLCDC--------NRQNPLLALVVKICLSTGARWREAVNLTRSQVTKYRITF-V 227

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           + KG K R +P+   + + I+       F                       FQ      
Sbjct: 228 RTKGKKNRSIPISKELYEEIIALDGFKFF-------------------TDCYFQFLSVMD 268

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           +  + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T  Y +++ ++    +
Sbjct: 269 KTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQRILGHHDIKMTMRYAHLSPEHLETAL 328


>gi|31580573|gb|AAP51266.1| integrase [Staphylococcus aureus]
 gi|31580575|gb|AAP51267.1| integrase [Staphylococcus aureus]
 gi|31580577|gb|AAP51268.1| integrase [Staphylococcus aureus]
          Length = 378

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/320 (16%), Positives = 109/320 (34%), Gaps = 42/320 (13%)

Query: 24  NLEIERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           +L +E+   K T++  +Y+     F         E     +I+ ++    +  I+K   +
Sbjct: 72  DLWLEQY--KHTVRESTYQRVVTLF----NTAILEHFNNVSIKSITIPYCQRVINKWNDK 125

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
               ++++   S +    +Y    KI TE+   + +  +K  +      ++ +       
Sbjct: 126 YKDMKAIRIYTSNV---FEYAVNLKIITENPFKHTKQPRKKET-----PQEDSYVYYSRD 177

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG------- 194
            L T       +  + AI   L   G R  E ++LT  +I  ++ T+ I           
Sbjct: 178 ELQTFLSFVEDNLVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGNNYK 237

Query: 195 ---------DKIRIVPLLPSVRKAILEYYDLCPFDL------NLNIQLPLFRGIR-GKPL 238
                       R + +       + ++      +        L     +F  +   K L
Sbjct: 238 PIIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNVSTNKRL 297

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-I 297
            P    + +  + +          H  RH   + L   G  ++ +Q  LGH  + TT  I
Sbjct: 298 YPEYCNKVLANVCKKHNF-KQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIKTTMDI 356

Query: 298 YTNVNSKNGGDWMMEIYDQT 317
           Y +V  K   D + E +   
Sbjct: 357 YAHVTEKQ-RDQVAEKFANY 375


>gi|282858566|ref|ZP_06267736.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282588657|gb|EFB93792.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 380

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/269 (21%), Positives = 98/269 (36%), Gaps = 24/269 (8%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLS 93
           TLQ Y    + F  FL        +   + +L Y  I  F    RT       +  R + 
Sbjct: 132 TLQKYNVCKKHFSNFLRDKYGR--SDIRLSELGYIVIHDFDIYLRTVVGQNPNTATRMMK 189

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
             K+     +K  +      LN+R   +  +    L +++ L +      +       ++
Sbjct: 190 TFKTITILGRKLGVLHHDPFLNIRFHMEPVNR-GFLTDEEILKI-----ANKDFGIGRLE 243

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
                 ++  +  GL   +  +L P+NI      Q  +  + K      V LL   +  I
Sbjct: 244 LVRDVFVFSCF-TGLAYIDVYNLAPENIVTLNGKQWIMTKRQKTSVETNVLLLDIPKSII 302

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            +Y      D           G     L       Y++++    G+  + T H  RH+FA
Sbjct: 303 AKYSGKTYRD-----------GKLFPMLTNQKLNSYLKEIADICGIKKNLTFHLARHTFA 351

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           T  LS G  + S+  +LGH  + TTQIY 
Sbjct: 352 TMSLSKGVPIESVSKMLGHTNIKTTQIYA 380


>gi|171741083|ref|ZP_02916890.1| hypothetical protein BIFDEN_00149 [Bifidobacterium dentium ATCC
           27678]
 gi|171276697|gb|EDT44358.1| hypothetical protein BIFDEN_00149 [Bifidobacterium dentium ATCC
           27678]
          Length = 392

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 111/303 (36%), Gaps = 41/303 (13%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
            L  + G ++ T+ +Y    R+++         ++   TI + +   ++ F+        
Sbjct: 83  WLATQTGKAENTINAYTNAYRKYVS--------RLDSLTIAEATPLVLQTFLDG-VAGGS 133

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
           G  ++      +   ++    +     + + +++ + +      A+   +    +     
Sbjct: 134 GSATVSMVKLVLSGMMEMAVAQGAILHNPVRDLKRMSRHREGSVAIPADKVQKFL----- 188

Query: 144 HTSHETKWIDARNSA-ILYLLYGCGLRISEALSLTPQNIMDDQST-------LRIQGKGD 195
                 +W+ + + A I+ L+   GLR+ EA  L    +     T       +R +G+G 
Sbjct: 189 KAVETNEWLVSHDEADIIRLMLYTGLRVGEACGLCWDCVDFTAGTLSVERIAIRCKGEGM 248

Query: 196 KIRIVPLLPS------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN---------- 239
            ++  P            K+I+   +L    L+          +  +PL+          
Sbjct: 249 TLQAHPKTEHSRRTITAPKSIMHMLELRRISLDTGGIPNPHNLVFPRPLSGGSCEYLVRS 308

Query: 240 PGVFQRYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ- 296
           P V    +R+ R  LG       + H+LR + A+ L   G +   +   LGH   +TT+ 
Sbjct: 309 PNVVASDLRREREALGFGKGESLSPHSLRKTCASLLHDAGLNTLDVADYLGHSDTATTEN 368

Query: 297 IYT 299
           +Y 
Sbjct: 369 VYI 371


>gi|167567313|ref|ZP_02360229.1| phage integrase family protein [Burkholderia oklahomensis EO147]
          Length = 382

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/273 (20%), Positives = 103/273 (37%), Gaps = 28/273 (10%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           + +L+  +    ++KR+ +     ++K  +  +++ +  + K        I+    L+ S
Sbjct: 111 LHELTTRDFDLLVAKRKAEGDKPATIKHEIGLLRATINEMAKLGFKVSREIV-FPELRTS 169

Query: 123 NSLPRALN---EKQALTLVDNVLLHT--------SHETKWIDARNSAILYLLYGCGLRIS 171
             L R L+   E   L  +D   L T        + E       N  I   L   G R S
Sbjct: 170 YRL-RYLDSNDESALLRELDPERLRTRINVSKPLTPEMTRNMQDNYDITVFLLDTGCRYS 228

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           E  ++    I  D  T+ +     +   V  + S  +AIL       ++     Q  +F 
Sbjct: 229 EVANIPWSAINIDACTISLYRSKVRNEDVLHMTSRLEAILR----RRWEERRTGQRYVFE 284

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPL---------STTAHTLRHSFATHLLSNGGDLRS 282
              G     G   + I++     GL             T HTLRH+FA+ L+  G  L  
Sbjct: 285 DRTGN--ERGYSTKSIKKAIERAGLNDPVLVKERGGRVTLHTLRHTFASKLVKAGVSLYE 342

Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  +LGH     TQ Y +++  +     +++ D
Sbjct: 343 VSVLLGHSDPKMTQRYAHLSPNDASRKAVKVID 375


>gi|159042951|ref|YP_001531745.1| phage integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|157910711|gb|ABV92144.1| phage integrase family protein [Dinoroseobacter shibae DFL 12]
          Length = 397

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 101/296 (34%), Gaps = 27/296 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + +   +ER     T + Y      F+          I    +  +   +I     K 
Sbjct: 102 ERFFEAHVMER-CKPSTQREYRRSIDFFIN-------PAIGTFKVVDVERRDIAELHHKL 153

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALT 136
           R +        R+L  +       +   +  +  +   ++   ++     R L++ +   
Sbjct: 154 RDKPYQA---NRTLGVLSKMFNLAEVWGLRPDGSNPCRHVPKYRERKRE-RYLSQAELRR 209

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L +  +L     +        A   LL   G R+ E  +L    +  +   L        
Sbjct: 210 LGE--VLADCERSGSESPYVVAAFKLLILTGCRLGEIQTLRWDYLTPNGMEL--PDSKTG 265

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R +PL  + R  +          L  +   P     R +  +    Q   R++R   GL
Sbjct: 266 ARRIPLPSAARAVL--------DALPHDPGNPYVIAGRIEGQHITDLQHPWRRIRDLAGL 317

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                 H LRH++A++ +S+G  ++ +  +LGH +L TT  Y ++          E
Sbjct: 318 N-DVRIHDLRHTYASNAVSSGMPIQMVGRLLGHTQLQTTMRYAHLADDPVRKAAEE 372


>gi|39653675|ref|NP_945240.1| integrase [Streptococcus phage EJ-1]
 gi|38638843|emb|CAE82083.1| integrase [Streptococcus phage EJ-1]
          Length = 380

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 104/286 (36%), Gaps = 41/286 (14%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           + ++    +++++ +           +R+ S +     Y     I  ++     +  +  
Sbjct: 105 VSKIDPKYVQSYLDRL---DCSRNKKERNKSMLNLAFDYAIDLGIIKDNPARRAKLPRVQ 161

Query: 123 NSL-------PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
            +L        + L E +   L+  +    S     +      +   +   G RI EA+ 
Sbjct: 162 KTLEDWKKVGQKYLEEDEIKLLLKELYRRPSTYRIGL------LSEFMSLNGCRIGEAVG 215

Query: 176 LTPQNIMDDQSTLRIQGKGDKI-----------------RIVPLLPSVRKAILEYYDLCP 218
           + P N+  + +TL++ G  D                   R   +    ++ + E   +  
Sbjct: 216 IEPHNVDYESNTLQLHGTYDHTNGYQKGEKTSPKTLASYRETVMTTREKEILEEMEFMNE 275

Query: 219 FDLNLNIQL----PLFRGIRGKPLNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATH 272
            + N N +      +F    G PL    F   +++    L   +  + T+H  RH+  + 
Sbjct: 276 LEKNTNPRYKDMGFIFTTKNGVPLQTNSFNLALKKANERLETPIQKNLTSHIFRHTLVSR 335

Query: 273 LLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDWMMEIYDQT 317
           L  N   L++I   +GH     TTQIYT++  K     + ++ ++ 
Sbjct: 336 LAENNVPLKAIMDRVGHSDAKTTTQIYTHIT-KQMKSTVADVMEKY 380


>gi|89147328|gb|ABD62526.1| integrase [uncultured bacterium]
 gi|89147330|gb|ABD62527.1| integrase [uncultured bacterium]
 gi|89147342|gb|ABD62533.1| integrase [uncultured bacterium]
          Length = 163

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 66/162 (40%), Gaps = 37/162 (22%)

Query: 177 TPQNIMDDQSTLRIQ-GKGDKIRIVPLLP---SVRKAILEYYDLCPFDLNLNIQLP---- 228
             +++  D   + +  GKG K R   L        K ++E   L   D NL    P    
Sbjct: 1   RVKDVDFDNGCITVHDGKGGKSRNSLLPTRLIPAIKQLIEQARLIQQDDNLQGVGPSLPF 60

Query: 229 -----------------LFRG-----------IRGKPLNPGVFQRYIRQLRRYLGL-PLS 259
                            +F             +    L+  V ++ ++   +  G+    
Sbjct: 61  ALDRKYPSAYRQAAWMFVFPSSTLCNHPYNGKLCRHHLHDSVARKALKAAVQKAGIVSKR 120

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGHDIRTVQELLGHTDVKTTQIYTHV 162


>gi|32471173|ref|NP_864166.1| integrase [Rhodopirellula baltica SH 1]
 gi|32396875|emb|CAD71843.1| integrase [Rhodopirellula baltica SH 1]
          Length = 195

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 5/164 (3%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYY- 214
             I   +Y CGLR  +   L PQ++  D+  LR+   KG + R VPL  +   A   ++ 
Sbjct: 21  QVIFRAMYSCGLRGVDVRHLRPQDVDADRMMLRVCTTKGHRQREVPLPQATLDAFRAHWA 80

Query: 215 -DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-STTAHTLRHSFATH 272
               P  L    Q         +P++    QR   ++   LG      T HTLRHS+AT 
Sbjct: 81  THRNPNWLFPATQRNTPASKADQPISARTIQRGFTKVTESLGWQDSGLTPHTLRHSYATA 140

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +L  G +L+ +Q  LGH  L  T++Y ++  + G +   +I  Q
Sbjct: 141 MLDAGVNLKVLQGYLGHKNLQATEVYLHLT-RLGDERARQIVAQ 183


>gi|268611921|ref|ZP_06145648.1| hypothetical protein RflaF_20741 [Ruminococcus flavefaciens FD-1]
          Length = 310

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 90/210 (42%), Gaps = 20/210 (9%)

Query: 106 KITTESNILN--MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
            +          ++    ++   + L+  +   L+ N+ L++     W       ++ L+
Sbjct: 92  GLIARDPTRKVIIKGKSPNDKKKKYLSRYELQKLLTNLDLNSGLNMDW-------LILLI 144

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEYYDLCP 218
              G+R SEA+++TP +      TL +    D        P     SVRK  L++  +  
Sbjct: 145 AKTGMRFSEAIAVTPVDFDFTHQTLSVNKTWDYKGEGGFQPTKNKSSVRKIRLDWQTVGQ 204

Query: 219 FDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
           F      LN   P+F   + K +        + +  + +G+P + + H LRH+ A+ LL 
Sbjct: 205 FYAIVRELNDTAPIFVS-KEKKIYNSTLNDVLERHCKAVGIP-TISVHGLRHTHASLLLF 262

Query: 276 NGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           +G  + S+   LGH  ++TTQ  Y ++  +
Sbjct: 263 DGVSIASVAQRLGHSSINTTQKTYLHIIRE 292


>gi|325297680|ref|YP_004257597.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317233|gb|ADY35124.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 368

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 88/235 (37%), Gaps = 29/235 (12%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           I   S     S  ++ LK   K K+  E+    +  ++        L   +   L     
Sbjct: 156 ISRNSAAGYYSTFRALLKIAYKEKMLRENLNDFLEKIEWKEVKKEYLTLDEVKKL----- 210

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRIQG-KGDKIR 198
              +   K    + +++   +   GLRIS+ L L  ++     D    +RI   K +   
Sbjct: 211 --AATPCKIPVLKQASLFACM--TGLRISDILKLDWRDFEVGPDQGYYIRICTEKTETEA 266

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            +P+     +   E+               +F+G     L   +    ++Q     G+  
Sbjct: 267 TLPISQEALELCGEW-----------GSGKVFKG-----LTRSMTHHPLKQWIAEAGIRK 310

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             T H  RHS+A   +S G D+ ++  +L H  ++TTQIY ++ +    +   +I
Sbjct: 311 HITFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVTTTQIYADLVNSKKRETANKI 365


>gi|281425545|ref|ZP_06256458.1| putative integrase [Prevotella oris F0302]
 gi|281400351|gb|EFB31182.1| putative integrase [Prevotella oris F0302]
          Length = 422

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 60/319 (18%), Positives = 126/319 (39%), Gaps = 40/319 (12%)

Query: 14  LLKERQNWLQNLEIERG------LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR--Q 65
           LL+E Q +++    E+       ++K T  +Y   T+     +  Y  E++ ++ IR  Q
Sbjct: 110 LLEEAQLFIE----EKRPCVGITVAKPTFANYIYATQ----LIEAYLRERLGLEDIRYAQ 161

Query: 66  LSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L Y  I       ++++ +   +++  +  ++  +   +++K        + +  +  + 
Sbjct: 162 LDYAFIEGLDFYLKSERNLSLATIQIVVIFLRKLIGIGQQKKYIRIDPFADYKA-ELPHR 220

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-- 182
             R L  ++   ++   ++    E          +       GL   +   L P++I+  
Sbjct: 221 TRRYLTTEELQRVLQTPIIDRQFERA------RQLFLFCAFTGLARVDMQRLKPKHIIYN 274

Query: 183 -DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
            D    +RI + K D   I+PLLP  ++ +  Y        +      +F       L  
Sbjct: 275 ADGTEEIRIKRQKTDVEAIIPLLPITKQILSLYI------KDKKSDELIFPN-----LTI 323

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYT 299
                    + +   +    T H  RH+F+T   LSNG  + ++  +LGH  + TTQIY 
Sbjct: 324 RKASLACVNIGQICRIEKGLTFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYG 383

Query: 300 NVNSKNGGDWMMEIYDQTH 318
            +      + M  + D+ H
Sbjct: 384 KITDHKIQEDMTALTDREH 402


>gi|262039474|ref|ZP_06012777.1| site-specific recombinase, phage integrase family [Leptotrichia
           goodfellowii F0264]
 gi|261746503|gb|EEY34039.1| site-specific recombinase, phage integrase family [Leptotrichia
           goodfellowii F0264]
          Length = 323

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/319 (17%), Positives = 115/319 (36%), Gaps = 36/319 (11%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L +L ++R  + L + +Y      +      + +     + I  +S   ++ FI  +   
Sbjct: 15  LADLWLKRERNFLKISTYST----YKNLYETHIKPVFGNKFIGNISSESLQQFIFDKLKN 70

Query: 82  K-------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
                   +  +++K  ++ IK  + Y  +  I  E      ++LK    +P+     + 
Sbjct: 71  GRLDGNGGLSRKTVKDIMTIIKISINYAIRENIIKE------KSLKY--KIPKTDKINEI 122

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
            T                    S  + L    GLRI E   L  ++I      L +    
Sbjct: 123 NTFNQEEQSLLFKYIASNLTSKSVGILLAMSIGLRIGELCGLKWKDIDLQNEILIVNKTL 182

Query: 195 DKIRIVPLLPSVRKAIL---------------EYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
            +I          + I+                        L ++ +   F     K + 
Sbjct: 183 QRIYFRVKKGGKSEIIISVPKSKNSYRIIPLSRNLVNFLKILQIDDKSNYFLSNNEKYIE 242

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIY 298
           P  ++RY  ++   L +      H+LRH+FAT  + +G D +++  ILGH  ++TT ++Y
Sbjct: 243 PKTYRRYYYKILEKLKI-RKLKFHSLRHTFATTAIESGIDYKTVSEILGHASVNTTLELY 301

Query: 299 TNVNSKNGGDWMMEIYDQT 317
           T+   ++    +  I+   
Sbjct: 302 THPKIEHKKKCIELIFQNF 320


>gi|239907872|ref|YP_002954613.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239797738|dbj|BAH76727.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 374

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 61/294 (20%), Positives = 115/294 (39%), Gaps = 45/294 (15%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE----IRAFI 75
            +L +L++    S  T    E +T++    +       I  + +  ++Y +       F 
Sbjct: 96  KYLAHLKV----SGRT----ENNTKKLAKMIDNQFNPIIGDRVVNSMTYIDDMVPFIQFF 147

Query: 76  SKRRTQKIGDR---SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA--LN 130
            +   ++   R   ++ R    + +   +     +TT +    M+  KKS   PR   L 
Sbjct: 148 QETNGKQNRPRSQPTVNRYGDYVNAIFNFGVTTGLTTVNP---MKGRKKSREKPRDVQLT 204

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI--SEALSLTPQNIMDDQSTL 188
                 ++D+   H               + + +  G R   SE L+L   +I  D+   
Sbjct: 205 VDDVKRIMDHAEPHV-----------RWAMEVCFSLGTRPGESELLALKWDHIDFDKGIA 253

Query: 189 RIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           +I   K    R+VP+ P++             ++    Q       RG+P+  G+ ++  
Sbjct: 254 KIYASKTRTYRVVPISPTLL--------GKMKEVKTESQSGYVIEWRGQPI--GMIRKGF 303

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTN 300
           R+     G+      + LRH FAT +LS G DL ++  +LGH  +S TT  Y +
Sbjct: 304 RRACERAGITYPVRMYDLRHLFATTMLSKGADLAAVSKLLGHSMISTTTSHYYH 357


>gi|326791706|ref|YP_004309527.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326542470|gb|ADZ84329.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 384

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 101/276 (36%), Gaps = 37/276 (13%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           I    ++ +++T+I+ + + +  +     +L++  + +    K          + +  + 
Sbjct: 110 IGDIGLQCITHTQIQRYFNNKTDK--AKATLQKIKNLLNKAFKSAIHNNFIRYNPMDGII 167

Query: 118 NLKKSN--SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
             K +      + L  ++ L  ++                N   L L    G+R+ E L+
Sbjct: 168 IPKTAKEAKEIKILTTQEQLRYIEASKAEP----------NGLFLRLALYTGMRLGEVLA 217

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIV-----PLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
           L  +N+  +Q T+ ++    + R+       ++  V K       +    +   +   L 
Sbjct: 218 LKWENVDLEQGTITVKESMKRSRVYSDDGNFIVEDVIKEPKTKKGIRLIYIPDILIEELK 277

Query: 231 RGIRGKPL----NPGVFQRYIRQLRRYLGLPLS-------------TTAHTLRHSFATHL 273
           +  +   L    N         ++     +  +                H LRH+ AT L
Sbjct: 278 QIEKEDGLVFDTNESTVNHMHDRICTAAKINPNKVYKGETATTVYGVGIHALRHTLATRL 337

Query: 274 LSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
           L N  +++ +  ILGH  ++TT  IY++V   +  +
Sbjct: 338 LENNVNIKYVSDILGHKNITTTYNIYSHVLDDSKRE 373


>gi|255655345|ref|ZP_05400754.1| putative tyrosine recombinase [Clostridium difficile QCD-23m63]
          Length = 303

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/267 (19%), Positives = 104/267 (38%), Gaps = 25/267 (9%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           L+  T   Y      F  FL          + +   +  + + F+   +T K    + ++
Sbjct: 22  LNPNTKHDYLSKVILFKEFLKG--------KELIYATKEDCKNFVDYIQT-KYAKSTCEK 72

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR--ALNEKQALTLVDNVLLHTSHE 148
             S + SF  +LKK      +    +     +    +   L+ ++   L+  +       
Sbjct: 73  IYSYLHSFYNFLKKEGYIDINPFRYVEKPTVTRIKTKDDVLSIQEINKLIGIL------- 125

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPS 205
              ++ R+  I+  L   G  ++E +SL  +++M   +D S +R+ GKG K R+V L P 
Sbjct: 126 -PKLNIRDRVIIVCLVTTGCLLNELVSLKWKDLMVDENDNSYVRL-GKGRKERVVKLHPY 183

Query: 206 VRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             K + +Y +     ++ +     +F   +   +     +  +++     GL    +A  
Sbjct: 184 FFKLLEDYRNYSGLPEVIIPSDDFIFTTQKSNSITDRNVRLIVKKALDLAGLSQY-SARD 242

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFR 291
            RHSFA   L  G D   ++  LG   
Sbjct: 243 FRHSFAAISLRLGADESDVKKQLGWSD 269


>gi|303231738|ref|ZP_07318461.1| site-specific recombinase, phage integrase family [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302513687|gb|EFL55706.1| site-specific recombinase, phage integrase family [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 396

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 110/287 (38%), Gaps = 37/287 (12%)

Query: 61  QTIRQLSYTEIRAFISKR------RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
           + + QL  T+++ F + +        + +   +++         +    K  +TT++ + 
Sbjct: 108 RRLDQLDPTQLQNFFNDQLIHGGHNQKGLSPYTVRNQRRYFAHCIDTALKLGLTTKNPVR 167

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI--------LYLLYGC 166
             ++ K++ +    L++ +A  L+         E       +  +        +Y+    
Sbjct: 168 LTKSPKQTKAENHPLSQYEAHNLLQQ--AQDELEAAHSGPIDRLMTTSDLYIGVYIALET 225

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQG-------------KGDKIRIVPLLPSVRKAILEY 213
           G+R+ E ++L   +I+ D S + +Q              K    R + +   +  A+ ++
Sbjct: 226 GMRLGEIMALRWGDIVLD-SYITVQRSKSEIKEQNITLPKTGVGRKIQISQRLVNALTQH 284

Query: 214 Y-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ-RYIRQLRRYLGLPLSTTAHTLRH 267
                               +  G++G   +   +  R  ++L +  G+      H LRH
Sbjct: 285 RAIQSNYKKELLGYYQDDHHIIGGLQGNGYHARHYSSRLFKKLSQRAGIHRRVRFHDLRH 344

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           + AT LL  G + + +Q  LGH  ++ T  IY++V   +    +  +
Sbjct: 345 THATLLLLAGVNPKIVQERLGHASINVTLDIYSHVALADQAVAINAL 391


>gi|311741847|ref|ZP_07715658.1| phage-related integrase [Aeromicrobium marinum DSM 15272]
 gi|311314853|gb|EFQ84759.1| phage-related integrase [Aeromicrobium marinum DSM 15272]
          Length = 425

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 62/340 (18%), Positives = 126/340 (37%), Gaps = 62/340 (18%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + WL  LE +R L+  T  SY    R++++         I  + +  L+  ++RA     
Sbjct: 94  EQWL--LEQQRRLASHTWGSYAGTVRKWIV-------PTIGHKRLANLTPGDLRAVTRAE 144

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                   S   +L+  +  +K L+  +I        + ++K     P   +++ A+ L 
Sbjct: 145 EQAGKKPAS---TLATRRILVKMLRDARIEGHPIPARIFDVKAHTPPP---SDRDAIPLA 198

Query: 139 DNV-LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------ 191
           D + +++ S           A        G+R  E L LT  ++  D+  + I+      
Sbjct: 199 DAIAIMNASLTLPHTSRWIVAFFE-----GMRQGEVLGLTWDHVDLDRGIIDIEYQLDSL 253

Query: 192 ------------------------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
                                               RI+P++     A+ ++ +L P   
Sbjct: 254 AYLDREAGTFRHPDRITPKQLWRSYHLVPPKSKSGRRIIPIVGPALAALQQWRELAPPSP 313

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP----LSTTAHTLRHSFATHLLSNG 277
           +  +  P   G    P +       ++   +   +          H +RH+ AT LL  G
Sbjct: 314 H-GLVWPRPDGRPINPQHDTAEWIDLQDRAQVASVDGNQGRRYAGHEIRHTTATILLEIG 372

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            D R++++ILGH  + T++ Y +V  +   + M ++ D+ 
Sbjct: 373 ADPRTVEAILGHSSIVTSRGYQHVRDELSREAMQKVSDRF 412


>gi|255029354|ref|ZP_05301305.1| transposition regulatory protein tnpB [Listeria monocytogenes LO28]
          Length = 422

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/276 (20%), Positives = 111/276 (40%), Gaps = 25/276 (9%)

Query: 61  QTIRQLSYTEIRAFISKRR-------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI 113
           + IR L   +I AFI   R        + + +  L R +  ++ FL+ L+  +   E+  
Sbjct: 9   KAIRNLERKDILAFIEWTRCYYAENNRKGL-ENHLNRCMGVLQKFLEELQLLEH-KEAPR 66

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
            ++R L      P+    +Q  ++ D+VL        ++      I+++ +  GLRIS+ 
Sbjct: 67  KSIRQLINPGDFPKYTQHRQVNSIPDSVLEQLFSNLNYLHPEVIPIVWITFKTGLRISDV 126

Query: 174 LSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQL 227
           L+LT + ++    +    L I         +P+   +   I  L        +++ N + 
Sbjct: 127 LTLTNKCLITVNESPYLQLDISKTKVHNHRIPIDTHIADIITFLAKRCELETNMDNNPKR 186

Query: 228 PLFR----GIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLRHSFATHLLSNG 277
            LF       +G+P   G  +  +  L     +            H  RH++A  LL+NG
Sbjct: 187 YLFPRLSGTRKGRPFTQGFVREELNTLAIKQNIAGEDGEIYHFRMHEFRHTYAVKLLNNG 246

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            D+ ++Q +L H     T +Y   +  N      ++
Sbjct: 247 ADILTVQELLAHASPEMTMVYARYSDDNKRKEFEKV 282


>gi|119470153|ref|ZP_01612919.1| putative integrase [Alteromonadales bacterium TW-7]
 gi|119446574|gb|EAW27848.1| putative integrase [Alteromonadales bacterium TW-7]
          Length = 313

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 60/298 (20%), Positives = 110/298 (36%), Gaps = 64/298 (21%)

Query: 21  WLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +L  +  +   +  +K T+++Y      F+ F         +++    +   E+  F++ 
Sbjct: 5   FLTMIAEQMYLKRYAKSTIKAYLYWIASFIRFN--------SMRHPTTMGDNEVELFLNH 56

Query: 78  R-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               Q +   +  ++L+ +    K + K+ ++     L     K++  LP  L +++   
Sbjct: 57  LVNQQNVAPNTQTQALNALSFLFKEVIKKPLSLS---LGFIKSKRATKLPVVLTQQEINN 113

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGD 195
                        K   A +     LLYG G+R+   L L   +I  D + +RI  GKG 
Sbjct: 114 FF-----------KVCSAEHYLPCGLLYGSGMRLMGVLRLRVNDIDFDYNCIRIWDGKGG 162

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG----------------------- 232
           K R+V L   +   +     L    L L+++ PL+ G                       
Sbjct: 163 KNRVVTLAVELIPQLRSQIQLVDSYLQLDLKNPLYSGTYMPHLLRKKYPNHNRQLGWQYL 222

Query: 233 --------------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
                         +R   ++    QR ++Q      +    T HTLRHSFAT L  N
Sbjct: 223 FSSHKLSIDPESKQLRRHHIDEKQLQRAVKQTADDAKIRKHVTPHTLRHSFATKLYPN 280


>gi|271967898|ref|YP_003342094.1| phage integrase family site specific recombinase [Streptosporangium
           roseum DSM 43021]
 gi|270511073|gb|ACZ89351.1| phage integrase family site specific recombinase [Streptosporangium
           roseum DSM 43021]
          Length = 257

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 88/220 (40%), Gaps = 20/220 (9%)

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLPRALNEKQALTLVDNV 141
              ++ R LS +     Y  +R++   +   ++   K S   + P A   ++A  LVD  
Sbjct: 30  APATVARRLSSL---YGYATRRRLIAVNPADSVERPKVSTVGTTP-ARTVEEATALVDGA 85

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--QGKGDKIRI 199
              ++       A       LL  C +R+ E ++LT  ++  D   + I  + KG K   
Sbjct: 86  ETISAAYPADAAAV-----ALLSVCAVRVGELVALTVGSVAADAGHMVILFRRKGGKTDR 140

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL- 258
           +P+ P VR  +           + +   PLF     +P +       +R+     G+   
Sbjct: 141 MPIPPRVRALLEPLL------ADRSPGEPLFVREADRPFDRWRMTTALRRAATAPGVDHT 194

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             T HT R + AT  L  G  L  +Q +LGH    TTQ Y
Sbjct: 195 KLTPHTARATAATAALDAGVPLADVQELLGHASPVTTQRY 234


>gi|13475206|ref|NP_106770.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025957|dbj|BAB52556.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 232

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 100/226 (44%), Gaps = 13/226 (5%)

Query: 91  SLSGIKSFLKYLKKRKITTES-NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
            ++ +++FL+Y           ++++M  + +    PRA++      L+      +    
Sbjct: 1   MIAHLRAFLRYCGDHGEAAGGLHVIDMPRVYRGELPPRAMDWTMVRRLL-----ASIRRR 55

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRK 208
              D R+ AIL+L+   GLR SE  +L   +I     TLR+ Q K   + ++PL     +
Sbjct: 56  AARDWRDYAILHLMAYYGLRPSEVATLRLDSIDWKARTLRVEQRKTRSVLVLPLAGRTLR 115

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS-TTAHTLRH 267
            +  Y  +   D  L  QL L      KPL             +  GL L   ++++LRH
Sbjct: 116 LLHRYLQVGRPDSVL-PQLFLRIRSPIKPLKHYGVITVFTYRAQKSGLSLGGVSSYSLRH 174

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +FA  LL  G D+++I  +LGH  L  T +Y   +     D + ++
Sbjct: 175 AFAMRLLRRGVDVKAIGDLLGHRSLEATCVYLRAD----VDMLRKV 216


>gi|89147446|gb|ABD62583.1| integrase [uncultured bacterium]
          Length = 163

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/94 (41%), Positives = 51/94 (54%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           KA  E+     F        P    +R   ++P   QR +R+  +  G+    + HTLRH
Sbjct: 69  KAGKEWGWQYVFPSKQLSVDPRGGQVRRHHVSPEALQRAVREAVKKAGMVKPVSVHTLRH 128

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFATHLL NG DLR IQ +LGH  + TT IYT+V
Sbjct: 129 SFATHLLLNGVDLRQIQELLGHANVETTMIYTHV 162


>gi|325280482|ref|YP_004253024.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
 gi|324312291|gb|ADY32844.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
          Length = 372

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 62/294 (21%), Positives = 112/294 (38%), Gaps = 39/294 (13%)

Query: 36  LQSYECDTRQ--------FLIFLAFYTE----EKITIQTIRQLSYTEIRAFISKRRTQKI 83
           L  Y+   R+        +L F  F       E+I +    +     + A   +R  + I
Sbjct: 96  LAYYKKTLRKHDQKWEFVYLHFCNFVGGKCSFEEIDVDLCNKFREYLLNAKQLRRPERPI 155

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
              S     S  + FLK L + K+   +    +  ++  + +   L+ ++   L +    
Sbjct: 156 SRNSAVGYWSTFRGFLKILYRNKLIHSNVNDFLEKIEPEDVVKDYLSVEELYRLAET--- 212

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----DQSTLRIQGKGDKIRI 199
                 K    + +++   L    LRIS+ L+L  + I+D     +    +  K     I
Sbjct: 213 ----PCKIPVLKTASLFSCL--TSLRISDILTLRWEEIVDFAAGGKCVYTVTQKTKTEDI 266

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +P+     + I                 P   G+  K L     Q  +++  R  G+  +
Sbjct: 267 IPISDEALQLI--------------GYSPEKTGLVFKGLKRCWTQYPMKEWIRTAGITKN 312

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            T H+ R +FAT   + G D+R+IQSI+ H  ++TTQ Y  V   N      +I
Sbjct: 313 ITFHSYRRTFATLQAATGTDIRTIQSIMAHKSITTTQRYMKVVDSNKRKASNKI 366


>gi|73745528|emb|CAD10261.2| PSA integrase [Shuttle integration vector pPL2]
 gi|166997968|emb|CAP74562.1| PSA integrase [Cloning vector pIMK]
 gi|166997971|emb|CAP74564.1| PSA integrase [Cloning vector pIMC]
          Length = 384

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 114/292 (39%), Gaps = 37/292 (12%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T+  Y+    QF+ +     +EKI   +I  + Y   + FI+          ++   
Sbjct: 76  SQSTINLYDLAYNQFVDYF----DEKIKFNSIDAVQY---QQFINHLSVD-YAISTVDTR 127

Query: 92  LSGIKSFLKYLKKRKITTESNIL--NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
              I++            ++  +  ++     + +  + +   +   L++        E 
Sbjct: 128 HRKIRAIFNKAVHLGYMKKNPTIGAHISGQDVAKNKAQFMETDKVHLLLE--------EL 179

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-------------KGDK 196
               + + A+++L    G+R  E ++LT ++I   + ++ +               K  K
Sbjct: 180 AKFHSISRAVIFLAVQTGMRFEEIIALTKKDINFTKRSITVNKAWDYKYTNTFIDTKTKK 239

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLN----LNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
            R++ +  S  + +  Y +     +      N  + LF     KP++     + ++++  
Sbjct: 240 SRVIYIDNSTAQYLHSYLNWHTEYMKEHAIKNPLMLLFITYHNKPVDNASCNKALKKICS 299

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
            +      T H LRH+     +  G D+  +   LGH  ++TT + Y++++S
Sbjct: 300 TIN-SEPVTLHKLRHTHTGLCVEAGMDIIYVADRLGHDDINTTLKYYSHLSS 350


>gi|16799149|ref|NP_469417.1| hypothetical protein lin0071 [Listeria innocua Clip11262]
 gi|16412491|emb|CAC95304.1| lin0071 [Listeria innocua Clip11262]
          Length = 400

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 95/254 (37%), Gaps = 30/254 (11%)

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           +++ + +  RS++     I S  +   + K+   +    +R  K +   P      +   
Sbjct: 148 EKKNKPLSPRSIRNIYFAINSVFETAVEWKVIPINPAEGVRLPKTTKRPPTIYTPAEIE- 206

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----- 191
           L++  L+               ++Y+    G R +E  +L  +++   +  L  +     
Sbjct: 207 LLNAALVKEPLRL-------QVMIYIALISGCREAELAALEVKHVNLIEDELTFEQTLVA 259

Query: 192 -----------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGK 236
                       K D   IV +   +   I  Y      DL    +      LF  + GK
Sbjct: 260 KAGEGLLLKESTKNDVAGIVSIPAWLTNLIETYISNEVLDLKTEGKWANHKFLFADMEGK 319

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH-FRLSTT 295
           P+ P    +  ++      LP+    H LRH+ AT LL+ G D++ IQ  L H   ++T+
Sbjct: 320 PIRPDSIYQRWKRFLERHNLPV-IRFHDLRHTSATLLLNKGRDIKIIQERLRHKSSVTTS 378

Query: 296 QIYTNVNSKNGGDW 309
            IY +V      D 
Sbjct: 379 NIYAHVLKDTHKDA 392


>gi|30263996|ref|NP_846373.1| prophage LambdaBa02, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Ames]
 gi|47778252|ref|YP_020778.2| prophage lambdaba02, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186834|ref|YP_030086.1| prophage LambdaBa02, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Sterne]
 gi|65321318|ref|ZP_00394277.1| COG0582: Integrase [Bacillus anthracis str. A2012]
 gi|165872111|ref|ZP_02216750.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0488]
 gi|167633704|ref|ZP_02392028.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0442]
 gi|167641018|ref|ZP_02399275.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0193]
 gi|170688722|ref|ZP_02879926.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0465]
 gi|170705756|ref|ZP_02896219.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0389]
 gi|190565741|ref|ZP_03018660.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis Tsiankovskii-I]
 gi|227816697|ref|YP_002816706.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. CDC 684]
 gi|229604530|ref|YP_002868225.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0248]
 gi|254683690|ref|ZP_05147550.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. CNEVA-9066]
 gi|254721526|ref|ZP_05183315.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. A1055]
 gi|254736035|ref|ZP_05193741.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Western North
           America USA6153]
 gi|254743926|ref|ZP_05201609.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Kruger B]
 gi|254754295|ref|ZP_05206330.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Vollum]
 gi|254758014|ref|ZP_05210041.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Australia 94]
 gi|30258640|gb|AAP27859.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. Ames]
 gi|47551957|gb|AAT33253.2| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180761|gb|AAT56137.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. Sterne]
 gi|164712058|gb|EDR17596.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0488]
 gi|167511068|gb|EDR86457.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0193]
 gi|167531110|gb|EDR93797.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0442]
 gi|170129296|gb|EDS98160.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0389]
 gi|170667238|gb|EDT17997.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0465]
 gi|190562660|gb|EDV16626.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis Tsiankovskii-I]
 gi|227005467|gb|ACP15210.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. CDC 684]
 gi|229268938|gb|ACQ50575.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0248]
          Length = 376

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 99/284 (34%), Gaps = 30/284 (10%)

Query: 41  CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLK 100
               Q+   L      +   + +  +    +  F  K   + +  + +      +K  L 
Sbjct: 81  STLYQYKRILRSRVMPEFGEKRLSDIKPLSVHNFHQKLLKEGLTTKYISSVDVMLKQILD 140

Query: 101 YLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
              + ++   +     +  K       +   ++A+  ++            I        
Sbjct: 141 KGVELEMINSNPAKKAKRPKVKKKAQASWTVEEAMKFMEY---------AKIQGSYYIAF 191

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---------------GKGDKIRIVPLLPS 205
            L    G+RI E L+L  ++I  +   + +Q                     R++P+   
Sbjct: 192 VLALHTGMRIGEVLALQWKDINFESKVIHVQRTLTLVDGKYELGETKTEASNRMIPMTQE 251

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
           + + +LEY          N    L      K ++P   +  ++ L   + +P     H +
Sbjct: 252 LMRELLEYQSHK----KDNSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPY-IRFHDI 306

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
           R +F T L+ +G + + +  +LGH  +STT  IYT+V  +   +
Sbjct: 307 RRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDVYEERQIE 350


>gi|291517045|emb|CBK70661.1| Site-specific recombinase XerD [Bifidobacterium longum subsp.
           longum F8]
          Length = 418

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/354 (14%), Positives = 113/354 (31%), Gaps = 48/354 (13%)

Query: 1   MEGNNL-PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
           ME   L P   S  L    + WL+   +   +   T   Y     +    +     E I 
Sbjct: 62  MERTGLLPGAKSPYLKDYAERWLEEYRL--NVKPTT---YRTRAGRIHACM-----EVIG 111

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
              + +L+   IR  +    ++++   +LK     +K  L  ++  ++        ++  
Sbjct: 112 CIRLTELTPDHIRQCMRVL-SKRLAPSTLKDHFVSLKMMLDQVELEELIPVDPCRRVKPP 170

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS-----AILYLLYGCGLRISEAL 174
           +   +  R L+  Q   L++ V    +         +       +  L +  G+R  E  
Sbjct: 171 RVEPTETRILSPDQPKQLIEAVPNRGAKRRGPALTVDVDESWMLLFELAFTAGMREGERY 230

Query: 175 SL------------------------TPQNIMD------DQSTLRIQGKGDKIRIVPLLP 204
           +L                         P++ +       +     +     K        
Sbjct: 231 ALMPYELEQRDGVPGINVQQQIQQYGKPEDAVMPAWLKAEHLYGILWLTTPKTHAAHRFV 290

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            +  ++ +        L++  +  +F   RG P+     +    +  +  GLP   T H+
Sbjct: 291 PISTSLWQRLWARIKRLDIGPRDLIFTNSRGNPVRSSTERYNWNKALKAAGLP-PVTIHS 349

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
            RH  A+          +  +I+GH  +S T  YT+ ++ +    +       H
Sbjct: 350 ARHWTASMTARANMPDDARTAIMGHTSISMTNHYTHRDAASLAALLDRAIPDLH 403


>gi|182420027|ref|ZP_02951261.1| integrase [Clostridium butyricum 5521]
 gi|182376064|gb|EDT73651.1| integrase [Clostridium butyricum 5521]
          Length = 380

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/306 (15%), Positives = 103/306 (33%), Gaps = 45/306 (14%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLK 89
           LS  T   Y       LI L       +    I+ +S   ++ F +    +K +   ++K
Sbjct: 82  LSVNTRNDYLSRINTNLIPL-------LGEYKIKDISIDVVQNFYNTLINEKHLKPVTVK 134

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           + L  + S LKY + + +  +     ++ +K         N+ +    ++ +     +  
Sbjct: 135 KYLDILSSCLKYAQSKDLIYKLPTNYIQKVKIQKPKIEYWNQDEVNFFLNYIKNTYLYTP 194

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI---------- 199
            +ID             GLRI E   L   ++      + +  +    +           
Sbjct: 195 IFIDVL----------TGLRIGELCGLRWCDVDLQNGIITVNHQLIHDKRLKVLMLTDLK 244

Query: 200 ---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ-RYIRQLRRYLG 255
                   ++ K +++Y      D +      +          P      + +++ ++  
Sbjct: 245 TSSSHRRITIPKILIDYLKELKADRSATDNGYVVLDRNDYKYTPRSLSMNFTKKVAKFSD 304

Query: 256 LP------------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN 302
                            + H LRH+ AT L++NG +++ +   LGH  +  T   YT+V 
Sbjct: 305 SKEKHKDDKNYMQLKQISFHGLRHTHATLLIANGENVKVVSERLGHTDIRMTLNTYTHVL 364

Query: 303 SKNGGD 308
                +
Sbjct: 365 DSMKNN 370


>gi|89147606|gb|ABD62662.1| integrase [uncultured bacterium]
          Length = 163

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/110 (31%), Positives = 54/110 (49%)

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G+G       L     +A +E+     F      + P    +R   ++    Q  + +  
Sbjct: 53  GEGRVWLPDALERKYPRASVEWGWQWVFPAEKRSRDPRSEVVRRHHVHEKNLQNAVSRAV 112

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R  G+    + H+ RHSFATHLL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 113 RVAGVLKPASCHSFRHSFATHLLEAGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|282919848|ref|ZP_06327580.1| integrase [Staphylococcus aureus subsp. aureus C427]
 gi|282316486|gb|EFB46863.1| integrase [Staphylococcus aureus subsp. aureus C427]
          Length = 345

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 112/278 (40%), Gaps = 18/278 (6%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           + T + Y    +          + KI    + +++    + FI+    +   + +++++ 
Sbjct: 74  ENTYRHYRNALQH-------IQKHKIGKMELSKINRQVYQKFINDYSKEHAKE-TIRKTN 125

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             I+S L       +  ++    + N K         +E++    V    +   H  K  
Sbjct: 126 GAIRSALDDALYDGLIFKNPAYKV-NYKAGKP---TKSEQEKFISVTEYEILKDHVRKKR 181

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
              + A+  ++   G R+S A ++  ++I   ++T+ I  +        +  S+ K+ ++
Sbjct: 182 TRSSLALF-IMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYI--SIAKSDMK 238

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +         ++    +F+      +N       ++   R   +P+  T+H LRH+  ++
Sbjct: 239 HIMDVISTFAISYDGYIFKKAGSI-INLQAINNALKSACRVNNIPI-ITSHALRHTHCSY 296

Query: 273 LLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDW 309
           LL+ G  +  I   LGH  ++ TT +Y+++  +   + 
Sbjct: 297 LLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEE 334


>gi|120406877|ref|YP_956706.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119959695|gb|ABM16700.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 310

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 86/248 (34%), Gaps = 16/248 (6%)

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R ++  + F +++      TE     +   ++    P   +      L+          
Sbjct: 66  SRRMTIARGFARHMAGIDARTEIPPFGVVGSRRHRHEPYIFSPTDIDMLLGG---AQGLR 122

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQGKGDKIRIVPLLPSVR 207
           T++  A + +++ LL   G+R+ E + L   +    D   L  + K  K RIVPL PSV 
Sbjct: 123 TRFACATHHSMIGLLATTGMRVGEVIRLDRADVCSLDARLLIRESKFGKSRIVPLHPSVL 182

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL----PLSTTAH 263
            A+  Y  L             F   RG  +     Q   R L    G+    P     H
Sbjct: 183 DALQRYARLRDDVHPQPGTASFFVSSRGNRMVYQTIQSVFRNLCDSAGIGADAPSRPRIH 242

Query: 264 TLRHSFATH----LLSNGGD----LRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            LRH+FA          G D    L  + + LGH     T  Y +   +        +  
Sbjct: 243 DLRHTFAIRTLIGWYRGGEDVEARLPVLSTYLGHRDPRWTYWYLSAAPELLAVAASRLEA 302

Query: 316 QTHPSITQ 323
            + P  T+
Sbjct: 303 TSTPGGTR 310


>gi|298674312|ref|YP_003726062.1| integrase family protein [Methanohalobium evestigatum Z-7303]
 gi|298287300|gb|ADI73266.1| integrase family protein [Methanohalobium evestigatum Z-7303]
          Length = 391

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 103/258 (39%), Gaps = 15/258 (5%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           + +  +   ++   +           + +     IK F K+L + +     + +  +  +
Sbjct: 63  KNLADVDEKDVEQLVGSLERSSKKYSTKRDYKITIKKFFKWLYRSEKLEMVDWIPTKKSR 122

Query: 121 KSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           +++ LP   L       +VD             +AR+ AI+Y LY    RISE  ++  +
Sbjct: 123 ENDKLPEDMLTPDDIKKMVDA----------AGNARDRAIIYTLYESAARISELANMKMR 172

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG--KP 237
           ++  D+    I   G        +     A+  + ++ P   + +  + +  G R   +P
Sbjct: 173 DVKFDEDGALIHLDGKTGPRTVRVAYSVPALGTWIEMHPNKNDKDAYVWINIGSRSKGQP 232

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQ 296
           +    FQR I++  +   +  +   H  RHS AT L S   +   ++  +G    S  T 
Sbjct: 233 MKYSSFQRLIKRTAKKANIDKNVHHHLFRHSRATEL-SQIIEQPLLEKFMGWVHGSGMTS 291

Query: 297 IYTNVNSKNGGDWMMEIY 314
           +Y +++ ++  + +  +Y
Sbjct: 292 VYLHLSDEDLDNAICNMY 309


>gi|150008734|ref|YP_001303477.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149937158|gb|ABR43855.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 368

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 98/274 (35%), Gaps = 34/274 (12%)

Query: 49  FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-----IGDRSLKRSLSGIKSFLKYLK 103
               +   K T   +      + R ++ K +        I   S     S  ++ LK   
Sbjct: 117 HFEKFVGGKCTFGDVTVELCEKFRDYLLKCKQINHPNAYISRNSAAGYYSTFRALLKIAY 176

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           K K+  E+    +  ++        L   +   L        +   K    + +++   +
Sbjct: 177 KEKMLRENLNDFLEKIEWKEVKKEYLTLDEVKKL-------AATPCKIPVLKQASLFACM 229

Query: 164 YGCGLRISEALSLTPQNIM---DDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPF 219
              GLRIS+ L L  ++     D    +RI   K +    +P+     +   E+      
Sbjct: 230 --TGLRISDILKLDWRDFEVGPDQGYYIRICTEKTETEATLPISQEALELCGEW------ 281

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
                    +F+G     L   +    ++Q     G+    T H  RHS+A   +S G D
Sbjct: 282 -----STGKVFKG-----LTRSMTHHPLKQWITEAGIRKHITFHCFRHSYAVIQISLGTD 331

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           + ++  +L H  ++TTQIY ++ +    +   +I
Sbjct: 332 IYTVSKMLTHKNVTTTQIYADLVNSKKRETANKI 365


>gi|239622960|ref|ZP_04665991.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522612|gb|EEQ62478.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 395

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/337 (15%), Positives = 106/337 (31%), Gaps = 62/337 (18%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
              + W+ NL  +  L+  T ++Y               +  I    +  +     +  +
Sbjct: 70  AWFEFWITNLIAD--LAPNTRRNYR-------ERYQKNIQPVIGNMRLCDVKPMHCKIVL 120

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--PRALNEKQ 133
             R        +++++   + +  +      + T+  +  +R  K   ++   + L  ++
Sbjct: 121 -NRMEATYAGSTIRQAYIAMGTMFRAAVMNDMLTKHPMDGVRYTKPVRAVDDIKFLTVEE 179

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
               ++              + N     LL   GLR SE + LT   I   + TL +   
Sbjct: 180 QTLFLE----------TAKRSHNYRQYVLLLETGLRTSEMIGLTWDAIDWKKRTLTVNKT 229

Query: 194 ------------------------------------GDKIRIVPLLPSVRKAILEYYDLC 217
                                                   R       +   ILEY D  
Sbjct: 230 LEYRHSEGIWRAGPPKTKTSYRTILLTKRAYDVLKSCYDERFTRKESELLSQILEYVDRR 289

Query: 218 PFDLN-LNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
                 L ++  +F   R  +P     +  ++ +L     +      H LRH++AT  + 
Sbjct: 290 TGQTEYLCMRDLVFINFRTGEPAKNSSYDTHLYKLCDEAKI-KRFCMHALRHTYATRAIE 348

Query: 276 NGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMM 311
            G   + +Q +LGH  + TT   Y +V   +  + + 
Sbjct: 349 RGVMPKVLQKLLGHASIKTTMDRYVHVTDTSLTNAIK 385


>gi|89147416|gb|ABD62568.1| integrase [uncultured bacterium]
          Length = 163

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/111 (35%), Positives = 53/111 (47%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           QG G       L      A  E+     F        P    +R   L+    QR +++ 
Sbjct: 52  QGFGAAYLWPALERKYPNAAQEWIWQYVFPSGRLSVDPRSGKVRRHHLHENALQRAVKET 111

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              +GL    + H LRHSFATHLL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 112 AVKVGLTKQMSCHVLRHSFATHLLEGGYDIRTVQELLGHADVSTTMIYTHV 162


>gi|325855557|ref|ZP_08171868.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483771|gb|EGC86731.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 404

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 97/273 (35%), Gaps = 25/273 (9%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKS 97
           Y         F+      K++     QL+   I  F           + +   + + +K+
Sbjct: 132 YHSTRTHLQNFIKSRY--KVSDLAFSQLTEQFIYDFQQYFMGICGFQESTFYNAATHLKT 189

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
             +   +  +        ++  K    LP+AL+      L++        E +       
Sbjct: 190 VCRLAYREGLADILLFDKVKVSKGDKKLPKALDRCSLDKLMNIQFGELEEEMETA----R 245

Query: 158 AILYLLYGCGLRISEALSLTPQNIM-DDQSTLRI---QGKGDKIRIVPLLPSVRKAILEY 213
            +       G    + + L+  +++ DD+ +L +   + K   +  + LLP   + I +Y
Sbjct: 246 DLFVFACHTGAAYCDLMELSRLHLVRDDEGSLWLKFNRQKTGVLCRIKLLPEAIRIIEKY 305

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                  L                +    +Q Y++ LR    +    T HT RH+FAT +
Sbjct: 306 KSDERESL-------------LPQMKYATYQSYLKALRLRASIAFPFTTHTARHTFATLI 352

Query: 274 -LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            L  G  + ++  +LGH  +S T+ Y  V  + 
Sbjct: 353 TLEQGVPIETVSKMLGHSNVSMTERYAKVTPQK 385


>gi|330502011|ref|YP_004378880.1| integrase [Pseudomonas mendocina NK-01]
 gi|328916297|gb|AEB57128.1| integrase [Pseudomonas mendocina NK-01]
          Length = 330

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 92/247 (37%), Gaps = 32/247 (12%)

Query: 70  EIRAFISKRRTQ--KIGDRSLK---RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           +  A+   R+T+   +   ++    R LS +  F + ++       + +  +R +K   +
Sbjct: 98  DALAWARYRQTRLKDVSPHTVNHEQRYLSAV--FSELIRLGAWVGNNPLAKVRQIKTDQT 155

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
               L  +Q   L++     T++ T  +         +    G R  EA SL    +   
Sbjct: 156 ELTFLTLQQVEQLLEECKRSTNNHTYPVA-------LICLATGARWDEAESLPRGALFGG 208

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           ++    + K  + R VP+   V +  L+        L +  +                +Q
Sbjct: 209 KAHFH-RTKNRQSRSVPIPKEVEEIALKVGMPGNGRLFMPCRSAF----------RSAYQ 257

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           R                 H LRH+FA+H +  GGD+  +Q ILGH  ++ T  Y +++  
Sbjct: 258 RCGFH-------TPGQMTHILRHTFASHYMMGGGDILGLQRILGHSTITMTMRYAHLSPD 310

Query: 305 NGGDWMM 311
           +    + 
Sbjct: 311 HLESALR 317


>gi|198274804|ref|ZP_03207336.1| hypothetical protein BACPLE_00963 [Bacteroides plebeius DSM 17135]
 gi|198276070|ref|ZP_03208601.1| hypothetical protein BACPLE_02255 [Bacteroides plebeius DSM 17135]
 gi|198270882|gb|EDY95152.1| hypothetical protein BACPLE_02255 [Bacteroides plebeius DSM 17135]
 gi|198272251|gb|EDY96520.1| hypothetical protein BACPLE_00963 [Bacteroides plebeius DSM 17135]
          Length = 372

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 61/317 (19%), Positives = 117/317 (36%), Gaps = 49/317 (15%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L      +GL+      ++   + F  F+           T  ++     R F+    
Sbjct: 95  DFLAYF---KGLADRKNIKWQHVYKHFERFVNGKC-------TFEEVDVDLCRKFMEYLL 144

Query: 80  --------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
                   +QK+   S     S  ++ L    + +   E+    +  ++   ++   L++
Sbjct: 145 NAPQSIHTSQKLHINSAAGYWSAFRAVLHTAYRDRKIKENPNGFLDRIECIPTMREHLSQ 204

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTLRI 190
           ++ + L          ET   +             GLR S+   LT Q I       + +
Sbjct: 205 EELIRL---------AETPCEEEVLKRAFLFGCLTGLRKSDIRQLTWQQIQPYTNGKMFV 255

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
             +  K + +   P   +A           L    +  +F G + K L     Q  +++ 
Sbjct: 256 TTRMQKTKQIVHNPISDEA--------YGLLGERHEGLIFDGFKDKML-----QGPLKRW 302

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+    T H  RHSF +  +  G D+  IQ+ LGH  ++TTQIY+ + ++     M
Sbjct: 303 LLAAGITKKITFHCTRHSFGSLHVEMGTDMAVIQAYLGHKNITTTQIYSKMAAQQ----M 358

Query: 311 MEIYDQTHPSITQKDKK 327
            E+ D+    IT K K+
Sbjct: 359 CEVVDK----ITLKRKE 371


>gi|325678716|ref|ZP_08158324.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324109580|gb|EGC03788.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 369

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/305 (16%), Positives = 109/305 (35%), Gaps = 45/305 (14%)

Query: 35  TLQSYECDTRQFLIF-LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
           T  SY      ++   L  Y  ++++   + ++    I      +   ++  +++K    
Sbjct: 82  TYASYCYMFDHYIRCRLGEYRIDRLSAFILERVLSELIE--CGGKNGHQLSSKTVKDITV 139

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            +KS  KY +    +   ++ N+   K  ++  +   E++ + +    +          +
Sbjct: 140 MLKSLFKYGEVE-YSLPDSMKNVTPPKCESAEIQVFKEQEIVKMRQYAI--------HSN 190

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK-------------------- 193
             +  IL  LY  GLRI E  +L   +I    +   ++                      
Sbjct: 191 ISDLGILLCLY-TGLRIGEICALQWGDIDLIDNVFHVRKTLTRIPNPDGSKPKTIVIIDT 249

Query: 194 ---GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
                 +R +P+   + K + E       D         F     K      +    +  
Sbjct: 250 PKSKRLVRDIPIPTFMLKRLTEVKKHQQNDD-------YFLTGTQKYTEHRSYSSRYKSF 302

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDW 309
            + +G+P     H LRH+FAT  +  G D++++  +LGH  +  T + Y + +       
Sbjct: 303 LKRIGVPYK-NFHVLRHTFATECIRIGIDVKTVSELLGHSSVKITLERYVHSDMDMKRQQ 361

Query: 310 MMEIY 314
           + ++Y
Sbjct: 362 LEKLY 366


>gi|239637254|ref|ZP_04678242.1| integrase [Staphylococcus warneri L37603]
 gi|239597210|gb|EEQ79719.1| integrase [Staphylococcus warneri L37603]
          Length = 407

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 64/328 (19%), Positives = 117/328 (35%), Gaps = 37/328 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
             WL++ +   G    T++    +T      +    ++++ I  I      +I    +  
Sbjct: 77  DEWLEHYKNHSGSKATTIKEKISNTNT----VKNAIDKEVLINNITHTYLQDIINNWASI 132

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR----ALNEKQA 134
            ++      +    S  K   KY   + I+    I   +  K  + L       L + + 
Sbjct: 133 HSKGHVQSLVIIIRSVFKYVFKYYDLQDISVLDKIDIPKKAKTRDELQAKRNNYLEDSEV 192

Query: 135 LTLVDNVLLHTSHETKWIDARNS----AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
             L++       H+      RN     AI+      G+RI E L++  +NI  +  TL I
Sbjct: 193 KELLNCFDYLIKHKKHSSRKRNYQMVKAIVQFQVANGMRIGELLAIKRENINYEDKTLDI 252

Query: 191 QGKGDKIRIVPLLPSVRKA------------------------ILEYYDLCPFDLNLNIQ 226
            G  + +          K                         ILE      ++     +
Sbjct: 253 DGTINWVTDKETGAFGVKETTKTSKSYRTIGLTTQSINLLKTLILENKKENQWNDKFIDR 312

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
             +F    G P++       I++      +  S T HTLRH+  + L   G +L++IQ  
Sbjct: 313 GYIFTNTAGSPIDLNKINNIIKEATEISSIKKSVTTHTLRHTHISTLAQLGINLKAIQER 372

Query: 287 LGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           +GH    TT +IYT+V  +   D M ++
Sbjct: 373 VGHSDYKTTLEIYTHVTDQMAKDMMNKL 400


>gi|255284546|ref|ZP_05349101.1| phage integrase [Bryantella formatexigens DSM 14469]
 gi|255264913|gb|EET58118.1| phage integrase [Bryantella formatexigens DSM 14469]
          Length = 313

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/292 (17%), Positives = 101/292 (34%), Gaps = 43/292 (14%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
             F  ++  Y + +I I      +YT  R +      +++G     R ++ I+       
Sbjct: 43  EWFDTWMEQYKKNRIKIG-----TYTSYRKYFDCAIKERLGS----RKIADIRGEHIQKL 93

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
             ++  E   L+              + K    +++  +          D+    +  ++
Sbjct: 94  YNELAQEDYALS--------------SIKVVSAVLNGCMQQALFVEYAKDSYLYNLFAVM 139

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK--------------- 208
              G+R  E   L   +I   ++ + +Q     I     L    K               
Sbjct: 140 LRTGMRSGEIRGLKYTDIDRKKNVIHVQRTLKYIEGQGYLEDTPKTRTSKRDIPLTKDIL 199

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS----TTAHT 264
            +LE            +   LF    G+PL+    Q  I ++ + +          T H 
Sbjct: 200 ELLEAQKRYWGFKVTRLDSYLFCNENGEPLSRDRVQAEIERIIKQIHAAGHEFERITPHV 259

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYD 315
            RH+FAT  +  G   + +++ILGH  L+ T  +Y++V      D M +I +
Sbjct: 260 FRHTFATRAIEAGMQPQVLKTILGHSSLAMTMDLYSHVLPDTKADEMEKIAN 311


>gi|223369798|gb|ACM88768.1| integrase [uncultured bacterium]
          Length = 163

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 68/162 (41%), Gaps = 37/162 (22%)

Query: 177 TPQNIMDDQSTLRIQ-GKGDKIRIVPLLP---SVRKAILEYYDLCPFDLNLNIQLP---- 228
             +++  D   + +  GKG K R   L        K ++E   L   D NL    P    
Sbjct: 1   RVKDVDFDNGCITVHDGKGGKSRNSLLPTRLIPAIKQLIEQARLIQQDDNLQGVGPSLPF 60

Query: 229 -----------------LFRG-----------IRGKPLNPGVFQRYIRQLRRYLGL-PLS 259
                            +F             +R   L+  V ++ ++   +  G+    
Sbjct: 61  ALDRKYPSAYRQAAWIFVFPSSTLCNHPYNGKLRRHHLHDSVARKALKAAVQKAGIVSKR 120

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HTLRHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHTLRHSFATHLLQAGPDIRTVQELLGHTDVKTTQIYTHV 162


>gi|256023557|ref|ZP_05437422.1| integrase family protein [Escherichia sp. 4_1_40B]
          Length = 358

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 93/239 (38%), Gaps = 29/239 (12%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + S++  +     ++    S + S F +  +  + +  + + NMR    +      L  +
Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q + L+         + K  D   + ++ +    G R  EA++LT   +   + T  ++ 
Sbjct: 179 QIVELL--------ADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITF-VRT 229

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+   + + I+       F                       FQ      + 
Sbjct: 230 KGKKNRSIPISKELYEEIMALDGFNFF-------------------TDCYFQFLSVMEKT 270

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++   +    + 
Sbjct: 271 SIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHLETALR 329


>gi|215408006|emb|CAS02330.1| integron integrase [uncultured bacterium]
          Length = 157

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 48/93 (51%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +     F  + +   P    +R   +     QR  ++     G+    T HTLRH
Sbjct: 65  RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTSQRAFKRAVEQAGITKPATPHTLRH 124

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           SFAT LL +G D+R++Q +LGH  +STT IYT+
Sbjct: 125 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 157


>gi|215485933|ref|YP_002328364.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
 gi|215264005|emb|CAS08346.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
          Length = 350

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 92/239 (38%), Gaps = 29/239 (12%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + S++  +     ++    S + S F +  +  + +  + + NMR    +      L  +
Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q + L+         + K  D   + ++ +    G R  E ++LT   +   + T  ++ 
Sbjct: 179 QIVELL--------ADCKRQDPILALVVKICLSTGARWREDVNLTRSQVTKYRITF-VRA 229

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+   + + I+       F                       FQ      + 
Sbjct: 230 KGKKNRSIPISKELYEEIMALDGFNFF-------------------TDCYFQFLSVMEKT 270

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++   +    + 
Sbjct: 271 SIVLPRGQPTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHLETALR 329


>gi|326790923|ref|YP_004308744.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326541687|gb|ADZ83546.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 365

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/310 (17%), Positives = 104/310 (33%), Gaps = 34/310 (10%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L     E      T+ SY      +   L            ++ +    I+ ++   +  
Sbjct: 67  LAEQWYEMHAKP-TI-SYRA-LENYKGILNKSLVPAFGNVKLKTIQPIHIQRYLMTLKH- 122

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
            +   ++++    +KS +    + KI   S I  +     +       +  Q    ++ V
Sbjct: 123 -LSPATIRKYFYVLKSIMDKGVEWKILEISPIKGITLPSLTTQEFTVWDNVQINKFLNIV 181

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----------- 190
                 +TKW          L +  G+R  E   L   +       + +           
Sbjct: 182 -----KDTKW-----YVPFLLAFTTGMRQGEICGLKWSDYNTITGDISVSRSMQRNFKLK 231

Query: 191 -QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-----LNPGVFQ 244
                   R + LL   + A+         + NL  +  +  G          +NP    
Sbjct: 232 DTKTKSSRRKIVLLKKTKLALDYQKRCQEENENLLGKQYINSGFICTHNNGESINPENLG 291

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
           +  ++L +   L      H +RHSFAT LL NG + + +  ILGH  + TT  +Y++V  
Sbjct: 292 KTFKKLIKEYKLE-PIRFHDIRHSFATILLQNGTNPKIVSEILGHSDVQTTLNVYSHVLP 350

Query: 304 KNGGDWMMEI 313
               D M ++
Sbjct: 351 DLQKDTMQQL 360


>gi|295398101|ref|ZP_06808150.1| bacteriophage integrase [Aerococcus viridans ATCC 11563]
 gi|294973620|gb|EFG49398.1| bacteriophage integrase [Aerococcus viridans ATCC 11563]
          Length = 388

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 85/269 (31%), Gaps = 42/269 (15%)

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLK-------KRKITTESNILNMRNLK------KS 122
           S    Q + +  LK      K F  Y          +   TE+    +   K      ++
Sbjct: 115 SSLLQQTLKEWRLKYK--SFKKFYNYTCRVLDYAHFKGYITENPKTKVIVPKAKVQYKQT 172

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
            +      + +    +     ++       +        +L   G+R  EAL+LT  +I 
Sbjct: 173 KTTEDFYTKDELNQFLQYAEQYSKDLD---NGMWYTFFRMLAFVGIRRGEALALTWNDIN 229

Query: 183 DDQSTLRI----------------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NL 223
             + T+ I                    +  RI+ L       +  +       L     
Sbjct: 230 FKEKTINIDKALKVGDNNIPYIGDTKNSNSDRILTLDDITVSILKRWKVQQARILLGFGY 289

Query: 224 NIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
           N+  P   LF  +    L+    +  + ++ +          H  RH+  + L   G  +
Sbjct: 290 NVTAPNQLLFSKLDNTHLDVSSPRNRLERICKKNNF-KMINIHGFRHTHCSLLFEAGVPM 348

Query: 281 RSIQSILGHFRLSTTQ-IYTNVNSKNGGD 308
           + +   LGH  + TT  IYT+V  ++   
Sbjct: 349 KDVMDRLGHSDIQTTMNIYTHVTKESKNK 377


>gi|148268476|ref|YP_001247419.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150394539|ref|YP_001317214.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|257793278|ref|ZP_05642257.1| integrase [Staphylococcus aureus A9781]
 gi|258419785|ref|ZP_05682748.1| phage integrase [Staphylococcus aureus A9719]
 gi|147741545|gb|ABQ49843.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149946991|gb|ABR52927.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|257787250|gb|EEV25590.1| integrase [Staphylococcus aureus A9781]
 gi|257844196|gb|EEV68582.1| phage integrase [Staphylococcus aureus A9719]
 gi|315128690|gb|EFT84692.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|329728069|gb|EGG64512.1| site-specific recombinase, phage integrase family [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 345

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 112/278 (40%), Gaps = 18/278 (6%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           + T + Y    +          + KI    + +++    + FI+    +   + +++++ 
Sbjct: 74  ENTYRHYRNALQH-------IQKHKIGKMELSKINRQVYQKFINDYSKEHAKE-TIRKTN 125

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             I+S L       +  ++    + N K         +E++    V    +   H  K  
Sbjct: 126 GAIRSALDDALYDGLIFKNPAYKV-NYKAGKP---TKSEQEKFISVTEYEILKDHVRKKR 181

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
              + A+  ++   G R+S A ++  ++I   ++T+ I  +        +  S+ K+ ++
Sbjct: 182 TRSSLALF-IMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYI--SIAKSDMK 238

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +         ++    +F+      +N       ++   R   +P+  T+H LRH+  ++
Sbjct: 239 HIMDVISTFAISYDGYIFKEAGSI-INLQAINNALKSACRVNNIPI-ITSHALRHTHCSY 296

Query: 273 LLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDW 309
           LL+ G  +  I   LGH  ++ TT +Y+++  +   + 
Sbjct: 297 LLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEE 334


>gi|304312423|ref|YP_003812021.1| Phage integrase [gamma proteobacterium HdN1]
 gi|301798156|emb|CBL46378.1| Phage integrase [gamma proteobacterium HdN1]
          Length = 434

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 103/306 (33%), Gaps = 23/306 (7%)

Query: 19  QNWLQNLEIE--RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           + + +    E  R  + LT      D  +F      +    I    + +++  ++R    
Sbjct: 114 ELFAEYFLSEQFREKAPLTQ---RGDQGRF----GNHILPLIGRLRLSEVNAEKVRKMRR 166

Query: 77  KRRTQKIGDRSLK----------RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           +    K    ++K          R LS +  +           ++    +   +      
Sbjct: 167 EIAEGKTATSTVKGGEGTARMAVRLLSAVYGW-ACKNVEGFAIDNPCRGVNLGRDGERTA 225

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
              + ++   L + +   T+      +A +   + LL   G R SE  ++  +NI  ++ 
Sbjct: 226 ILKDAEEYRRLFEALDRLTATRQVTENAADC--IRLLALTGARRSEVCAIRWRNIDAERG 283

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            + +     K                   +            +FRG +G      +  + 
Sbjct: 284 AIVLAPTEHKTGRKTGAKKTILLPAPALAIVAKRERGQPDDYVFRGEQGSGHT-WLNSKI 342

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
             ++RR   LP   T H LRHSFAT L   G +   +   LGH ++STT  Y N      
Sbjct: 343 WVRIRREANLPDGITNHALRHSFATMLAVQGAEAAQLMKALGHAQISTTVRYINTAEDAQ 402

Query: 307 GDWMME 312
             ++ +
Sbjct: 403 RRFLEQ 408


>gi|283957132|ref|ZP_06374596.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|283791308|gb|EFC30113.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 1336]
          Length = 223

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/200 (26%), Positives = 82/200 (41%), Gaps = 10/200 (5%)

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
           +  R  K    L   LNE + + L + +    + +  +   RNS ++ L+   GLRISEA
Sbjct: 28  IRFRTEKSEEKL-NYLNENEIIRLNNVLEKEKAKKEVYNSFRNSLLIKLMLYGGLRISEA 86

Query: 174 LSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
           L++   +     D+   + I GKG K +   +        LEY     F  N+     + 
Sbjct: 87  LNVKLCDFEEVDDEILKISIIGKGGKEQFAFIKKEEVDDELEY-----FKENIQDSDYIM 141

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
           +   GK LN       +  +     +      H LRH+ A  L + G +L  IQ IL H 
Sbjct: 142 QTSTGKHLNRSNAFLIVNNIYAKALISKK-GLHLLRHTLAMRLTAKGTNLVVIQKILRHA 200

Query: 291 RLSTTQIYTNVNSKNGGDWM 310
            L+TT IY    +      +
Sbjct: 201 NLNTTTIYAKATNDTIKAAL 220


>gi|325661389|ref|ZP_08150015.1| hypothetical protein HMPREF0490_00749 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472338|gb|EGC75550.1| hypothetical protein HMPREF0490_00749 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 331

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/325 (16%), Positives = 124/325 (38%), Gaps = 32/325 (9%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQS---YECDTRQFLIFLAFYTEEKIT---IQTIRQ 65
            E LK    ++ +   +R  S  T +    Y  D   +++      ++ I+    + +  
Sbjct: 16  AEELKNVPGFIADF-FDRYKSSATKKINWIYIRDMLNWMLSNGCIKKDSISNIVEEDMNG 74

Query: 66  LSYTEIRAFISKRRTQKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRN-- 118
           ++   +  ++++ +   I  R     S+    +   +F  YL++ K   E+ I ++ +  
Sbjct: 75  ITSNNVIKYLNELK-NGISGRANSLDSINTKKNVFSAFWNYLRQNKCVEENIIAHIPSNL 133

Query: 119 LKKSNSLPRA--LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
            K            +++    +  + + T ++ ++   RN AI+ L+ G G+R  E +++
Sbjct: 134 YKSEKKFKEVEIPTDEEVEKFL--ISITTGNKNEFNIIRNIAIVQLIKGSGIRSEELINM 191

Query: 177 TPQNIMD---DQSTLRIQGKGDKIRIV--PLLPSVRKAILEYYDLCPFDLNLN--IQLPL 229
              ++     D+  + + GKG+        +    R  + EY  +    +N        L
Sbjct: 192 DVSDLRLYEEDRPYMMVLGKGNIQEYDKVYMSEQARINMEEYLKIRSLFVNEREIKNEAL 251

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F       L+ G    + R+         +   H LRH   + L     D+  +Q  L H
Sbjct: 252 FLSNENNRLSKGAITGFFRKYSDE-----TIYPHMLRHWVGSKLYQETKDIVLVQRQLRH 306

Query: 290 FRLSTTQI-YTNVNSKNGGDWMMEI 313
             L T    Y +++     + ++ +
Sbjct: 307 KNLETAARYYVHMDESAIANAVLAL 331


>gi|296395312|ref|YP_003660196.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296182459|gb|ADG99365.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 422

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 63/319 (19%), Positives = 108/319 (33%), Gaps = 49/319 (15%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDT---RQFLIFLAFYTEEKITIQTI-RQLSYTEIRAF 74
           +++L  L    GL   TL  Y  D    RQ L  L+     K     I RQ+    +   
Sbjct: 84  EDFLNGLH---GLKPTTLDGYRFDLAVPRQLLGRLSVQQLAKQHFDNIVRQVQSGTLTRA 140

Query: 75  ISKRRTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPR 127
              R T+     K G RS+   L+  +  L+ L ++ +   +    +  +         R
Sbjct: 141 HRNRNTREGNRKKWGARSVNGMLNTCQRVLEGLVEQGVLARNPAQLVGRVPNEAKGAAER 200

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
           A   ++   ++              D R+  I +L Y  GLR  E   LT  ++  +   
Sbjct: 201 AHTVEEMRAVL----------AAAKDGRDRHIWHLAYH-GLRRGEISGLTWGDVDFEAQE 249

Query: 188 LRIQGKGDKIRIVPLLPS----------------------VRKAILEYYDLCPFDLNLNI 225
           + ++     +    +                           KA      L   + + N 
Sbjct: 250 VAVRSSRVCVGGKVIEQDSLKSRSSKRTLKGTPVLMAELRAAKARQAAERLAHGE-DYND 308

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
              +    RG P  P    R   +L++  G       H  RH+ AT +   G    S+ +
Sbjct: 309 GGWVACDERGNPYRPDTLTRKFAKLQKRAGTKNVIRLHDARHTCATIMHYQGVPAASVCA 368

Query: 286 ILGHFRLSTTQ-IYTNVNS 303
            LGH   + T  IYT+ ++
Sbjct: 369 WLGHANPAITMRIYTHPSA 387


>gi|265763143|ref|ZP_06091711.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263255751|gb|EEZ27097.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 410

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/290 (18%), Positives = 108/290 (37%), Gaps = 25/290 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKR 90
           S+ +   Y         F+      K++   +++L+   I  F    RT+K     ++  
Sbjct: 129 SERSYWKYCTVYNHLSEFIKQRY--KVSDIALKELTPAFITDFELFLRTEKDHCTNTVWS 186

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +  ++  +                  ++ K  +    L +++   L++      S+E  
Sbjct: 187 YMMPLRRIIYMAINNGWLQRDPFYGY-SITKEETKRGFLTKEEITQLINGTFKKKSYELI 245

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRIQGKGDKIRIVPLLPSVR 207
                   +       GL  ++   LT +N     D    ++ + +         L  V 
Sbjct: 246 ------RDLFIFCTFTGLSWTDMYHLTKENLEISFDGHLWIKTKRQKTGTESNIRLLEVA 299

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + I+E Y+    D  L   LP+        L     +  I+ + +Y G+  + T H  RH
Sbjct: 300 RHIIEKYEGMAKDGKL---LPV--------LCYSNCKNGIKVIAKYCGIEKNVTWHQSRH 348

Query: 268 SFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           S+AT   LSN   + ++  +LGH  + TTQIY  + ++     M ++  Q
Sbjct: 349 SYATTVCLSNDVPIETLSKMLGHRSIRTTQIYAKITAEKVSRDMEKLSKQ 398


>gi|225017445|ref|ZP_03706637.1| hypothetical protein CLOSTMETH_01371 [Clostridium methylpentosum
           DSM 5476]
 gi|224949855|gb|EEG31064.1| hypothetical protein CLOSTMETH_01371 [Clostridium methylpentosum
           DSM 5476]
          Length = 440

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/294 (19%), Positives = 103/294 (35%), Gaps = 42/294 (14%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           L +Y    +Q    +A Y  E      +  L+  +I AF  ++  +++   ++K   + I
Sbjct: 132 LSTYSGYEQQLNNPIAPYFREH--PVALCDLTKQDILAF-YEKELERVKPTTVKHYHALI 188

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
              L Y   + +   +    +   K          + + L L + +  H           
Sbjct: 189 HGALNYAVDKNLIPSNPADRIIISKPEPFKGDYYLDSEVLNLFEVIKGHKIE-------- 240

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK--------------------GD 195
              ++ L    GLR SE + L       + +   I+                        
Sbjct: 241 --LVVLLTAFYGLRRSEVIGLKWSAFDFNHNCFSIRHTVTTCNVKGERVTIKKDKAKNKS 298

Query: 196 KIRIVPLLPSVRKAILE-------YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            +R  PL+P +++ +LE          LC    N      +   + G  + P        
Sbjct: 299 SLRTYPLIPFLKERLLEAKKQQEENRKLCGRAYNKEYLGYVCVDVIGNLIKPNYVSSTFG 358

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           +L     L      H LRH+ A+ LL+NG  +  ++  LGH  +STT  IY ++
Sbjct: 359 KLLAKNNL-RHIRFHDLRHTCASLLLANGVPMEQVKEWLGHSEISTTVDIYGHL 411


>gi|254438184|ref|ZP_05051678.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198253630|gb|EDY77944.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 419

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/294 (18%), Positives = 107/294 (36%), Gaps = 33/294 (11%)

Query: 49  FLAFYTEEKITIQTIRQLSYTEIRAFISK-----RRTQKIGDRSLKRSLSG--------- 94
            LA     + + + + +++  ++   ++K      R  K    +  R L G         
Sbjct: 127 MLAKLVAPEWSNRLVTEITPYDVEKLLNKVAAGRARPSKAKPNNRARKLQGAKPTPVRAN 186

Query: 95  -----IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
                ++    Y        ++   + R  +  N+  R L+ ++   L +   L  + + 
Sbjct: 187 RTGEVLRKMFTYAVGWGWREDNPASSFRR-RIENARERFLSHEEIHKLAEA--LEAAEDR 243

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           +  D     I+ L    G R+ E       +   +  +        K R V  LP   +A
Sbjct: 244 RAAD-----IIRLCMLTGARVGEVRQAQFIHFNLEHLSWSKPASMTKQRKVHRLPISDEA 298

Query: 210 ILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
                      L       LF G + G+P+     +R+   +++ +G+P     H LRH+
Sbjct: 299 --AAIVRQRQLLVPRGCQLLFPGDVPGQPVKE--IRRFWSNIQKQIGIP-DVRIHDLRHT 353

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           FA+ L+S G  L  I  +LGH ++ TTQ Y ++        +  +     P   
Sbjct: 354 FASLLVSGGASLEMIGKLLGHSQMQTTQRYAHLMDSPLRAGVDAVASAFRPRPK 407


>gi|150007153|ref|YP_001301896.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|255015232|ref|ZP_05287358.1| integrase [Bacteroides sp. 2_1_7]
 gi|256840529|ref|ZP_05546037.1| integrase [Parabacteroides sp. D13]
 gi|298377579|ref|ZP_06987531.1| integrase [Bacteroides sp. 3_1_19]
 gi|149935577|gb|ABR42274.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|256737801|gb|EEU51127.1| integrase [Parabacteroides sp. D13]
 gi|298265598|gb|EFI07259.1| integrase [Bacteroides sp. 3_1_19]
          Length = 392

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/299 (18%), Positives = 115/299 (38%), Gaps = 26/299 (8%)

Query: 21  WLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +L  +  E     L + TL+++        ++      + I    +    Y         
Sbjct: 107 FLVFMREEILHSNLKESTLKNHLSTLHVLSLYKKDVLFKDINFNFLCDFEY--------F 158

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALNEKQAL 135
              Q+    ++ + +  +K ++     +++    +      + +K   S    L  ++  
Sbjct: 159 LLKQEYHRNTIAKHMKHLKRYINLAINKELFELHKYPFRKYK-IKYQESKRTHLTPEELG 217

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L +  L       + +D     +       GLR S+ +S+T +N +     + +     
Sbjct: 218 RLENLKLDGQRTLRRCLD-----MFLFSCYTGLRFSDIVSITKENFLIIDDKVWLVYSSV 272

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV-FQRYIRQLRRYL 254
           K  +   LP     + E   L  ++   N    LF    G PL+      + +R++ +  
Sbjct: 273 KTDVSVRLPLFL--LFEGKSLPIYERYKNAPRTLF----GVPLSSNSNVNKQLRRISQLA 326

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            +    + HT RH+ AT LL NG ++ ++Q +LGH  + TT+IY+N+        + +I
Sbjct: 327 SIDKKVSFHTARHTNATLLLYNGANITTVQKLLGHKSVRTTEIYSNIMDMTIVRDLEKI 385


>gi|258645470|ref|ZP_05732939.1| toxin-antitoxin system, toxin component, PIN family [Dialister
           invisus DSM 15470]
 gi|260402823|gb|EEW96370.1| toxin-antitoxin system, toxin component, PIN family [Dialister
           invisus DSM 15470]
          Length = 375

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/303 (17%), Positives = 109/303 (35%), Gaps = 41/303 (13%)

Query: 41  CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLK 100
              R + I       + +  + I+ L   E+ +F SK   Q+    + K++++ IK  L+
Sbjct: 79  TTVRLYKIIYKNQIAQIMGTRKIQDLERRELVSFQSKL-GQQYTTSTTKKAINIIKQLLE 137

Query: 101 YLKKRKITTESNILNMRNLKKS-------NSLPRALNEKQALTLVDNVLLHTSHETKWID 153
                 ITT +    +  +KK         ++ RAL E++    +               
Sbjct: 138 SAVIDGITTVNAAEYLPKIKKKSNERVARETIHRALTEEELKLFLKYAQTD--------- 188

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK-----------------GDK 196
             N   + LL   G+R  E  +L   +I    + + I                       
Sbjct: 189 -WNYNAICLLLATGMRAGELGALYWSDIDYKNNVIHITKTVTVNQNGKSIIGTTPKTQKS 247

Query: 197 IRIVPLLPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            R +PL   +R  +     +  +   +  + +   +F       +        I+++ + 
Sbjct: 248 KRDIPLNAEIRNILSKQRNFISMWTAERIIKLNDTVFNAEMQGIVYAKTINNSIKRILKR 307

Query: 254 LG-LP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
           +  +     TAH  R +FA+  +  G  L  ++ I+GH   S T  +Y ++  +   + M
Sbjct: 308 IEEIEIKPFTAHAFRSTFASMAVKKGMPLNVLKEIMGHASYSMTADLYGHIYDEQKQESM 367

Query: 311 MEI 313
            ++
Sbjct: 368 EDV 370


>gi|147919625|ref|YP_686635.1| integrase [uncultured methanogenic archaeon RC-I]
 gi|110622031|emb|CAJ37309.1| integrase [uncultured methanogenic archaeon RC-I]
          Length = 308

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/305 (17%), Positives = 109/305 (35%), Gaps = 43/305 (14%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+  +N+L      +  SK+ +++        L +      +    Q I +         
Sbjct: 36  LERLENYLIY---TKRYSKVNIKAVMDSATYLLRYYDLSKIDAEKAQEIEE--------- 83

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
              +R + +  R++ R L  +          ++ +E     +    K          K  
Sbjct: 84  --HQREKGMKSRTIVRRLHTL----------ELISE----AIGQPVKIKKPKVVKETKVG 127

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-- 192
           LTL++   L  S  +     R+ AI+ L+   G R  E ++    +I   Q    I+   
Sbjct: 128 LTLLECRALMQSANS----IRDRAIISLMLCTGARAKEIVAANVDDIDLKQRFFYIRAHS 183

Query: 193 -----KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
                K  +     L     + I E+ D+ P       +  LF     + L      + +
Sbjct: 184 PDEIVKNYREHKAILTKDAARYIQEWLDIRPEV----DEKALFLNTWAERLTKSGLHKIV 239

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
               +  G+     +H LR + AT++L +G  L  + + L H  + +T +Y   +++   
Sbjct: 240 VSTAKRAGIEKRCYSHLLRAACATNMLRSGISLNDVAAQLNHRSILSTMVYLTSDTETLR 299

Query: 308 DWMME 312
           D + +
Sbjct: 300 DSIDK 304


>gi|323191016|gb|EFZ76283.1| integrase [Escherichia coli RN587/1]
          Length = 350

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 92/239 (38%), Gaps = 29/239 (12%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + S++  +     ++    S + S F +  +  + +  + + NMR    +      L  +
Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q + L+         + K  D   + ++ +    G R  EA++L    +   + T  ++ 
Sbjct: 179 QIVELL--------ADCKRQDPILALVVKICLSTGARWREAVNLARSQVTKYRITF-VRT 229

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+   + + I+       F                       FQ      + 
Sbjct: 230 KGKKNRSIPISKELYEEIMALDGFNFF-------------------TDCYFQFLSVMEKT 270

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++   +    + 
Sbjct: 271 SIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHLETALR 329


>gi|295100463|emb|CBK98008.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 329

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 60/289 (20%), Positives = 110/289 (38%), Gaps = 22/289 (7%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSF 98
           YE + + F     F  E+ I    + +L    +  +I KR  +K   ++ K  L+  K F
Sbjct: 29  YEKEAKTFQTLDRFLVEQGINTPVLPEL---VVEKWIEKRPNEK--RKNQKWRLNFTKRF 83

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS-HETKWIDARNS 157
            KYL+          L + +   ++  P      +   ++          +         
Sbjct: 84  AKYLQLNGYAAYYPELTISSRDDADFSPCIFTSDELARIMKYFETMVPSRQCPTAHLVFP 143

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL 216
            +   L  CGLR  EA  L  +++      L+I + K DK R VPL  S+     +Y++ 
Sbjct: 144 LLFKTLICCGLRAGEATRLRVKDVDLINGVLQIWETKHDKPRYVPLSKSLWADYEQYFEE 203

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-----TAHTLRHSFAT 271
              + + N     F   R    +        R    + G+           H LRH+FA 
Sbjct: 204 IHAESSGNN--YFFPNPRKSCYHTTTVYNRFRDALWHCGIAHKGRGYGPRVHDLRHTFAV 261

Query: 272 H----LLSNGGDLRS----IQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                L  +  D+ +    + + LGH  +S TQIY ++ ++   +++ +
Sbjct: 262 RSMQKLKKSKSDIVTTLPYLSAYLGHCNMSATQIYLHLTAECYPEFIQK 310


>gi|156742821|ref|YP_001432950.1| integron integrase [Roseiflexus castenholzii DSM 13941]
 gi|156234149|gb|ABU58932.1| integron integrase [Roseiflexus castenholzii DSM 13941]
          Length = 276

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 100/278 (35%), Gaps = 60/278 (21%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           +  S  T Q+Y    ++F+ F               ++   EI AF+++    + +   +
Sbjct: 12  KHSSYRTEQAYVHWIKRFIFFHNKRHP--------AEMGAPEIEAFLTRLAVKENVAAST 63

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             ++L  I    + + ++ +  E  I  +R  KK   +P  L  ++   L  +       
Sbjct: 64  QNQALQSILFLYREVLRQPV--EEPIHALRA-KKPKRIPTVLTRQEVQQLFAH------- 113

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
               +      ++ LLYG GLR+ E L L  +++     T+ ++ GKG+  R+  L  S+
Sbjct: 114 ----LSGARLLMVRLLYGSGLRLMECLRLRVKDLDFPYQTITVRDGKGENDRVTVLPTSL 169

Query: 207 RKAI------------------------------------LEYYDLCPFDLNLNIQLPLF 230
            + +                                     E+     F        P  
Sbjct: 170 VQPLQAHLEQVRQQHEGDLAQGYGAVSLPDALARTYPHAEREWAWQWMFPSPRRSADPRS 229

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
             I   P++  + QR +R   R  GL    T HTLRHS
Sbjct: 230 GAICRHPMDLAMLQRAVRHAARAAGLTKPVTPHTLRHS 267


>gi|262381150|ref|ZP_06074288.1| integrase [Bacteroides sp. 2_1_33B]
 gi|301311180|ref|ZP_07217108.1| integrase protein [Bacteroides sp. 20_3]
 gi|262296327|gb|EEY84257.1| integrase [Bacteroides sp. 2_1_33B]
 gi|300830754|gb|EFK61396.1| integrase protein [Bacteroides sp. 20_3]
          Length = 392

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/299 (18%), Positives = 115/299 (38%), Gaps = 26/299 (8%)

Query: 21  WLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +L  +  E     L + TL+++        ++      + I    +    Y         
Sbjct: 107 FLVFMREEILHSNLKESTLKNHLSTLHVLSLYKKDVLFKDINFNFLCDFEY--------F 158

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALNEKQAL 135
              Q+    ++ + +  +K ++     +++    +      + +K   S    L  ++  
Sbjct: 159 LLKQEYHRNTIAKHMKHLKRYINLAINKELFELHKYPFRKYK-IKYQESKRTHLTPEELG 217

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L +  L       + +D     +       GLR S+ +S+T +N +     + +     
Sbjct: 218 RLENLKLDGQRTLRRCLD-----MFLFSCYTGLRFSDIVSITKENFLIIDDKVWLVYSSV 272

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV-FQRYIRQLRRYL 254
           K  +   LP     + E   L  ++   N    LF    G PL+      + +R++ +  
Sbjct: 273 KTDVSVRLPLFL--LFEGKSLPIYERYKNAPRTLF----GVPLSSNSNVNKQLRRISQLA 326

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            +    + HT RH+ AT LL NG ++ ++Q +LGH  + TT+IY+N+        + +I
Sbjct: 327 SIDKKVSFHTARHTNATLLLYNGANITTVQKLLGHKSVRTTEIYSNIMDMTIVRDLEKI 385


>gi|167767525|ref|ZP_02439578.1| hypothetical protein CLOSS21_02044 [Clostridium sp. SS2/1]
 gi|167710817|gb|EDS21396.1| hypothetical protein CLOSS21_02044 [Clostridium sp. SS2/1]
          Length = 396

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 104/298 (34%), Gaps = 38/298 (12%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           RQ+L  +     + + ++ I  +  ++ + +  +   +    +++      +K+      
Sbjct: 107 RQYL--MNALKNDPLGMRAIDTVKQSDAKEWAIRMSEKGYAYKTIDNYKRSLKASFYMAI 164

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           +     ++        K S+ L      K  LT      L    E   I ++    + LL
Sbjct: 165 QDDCIRKNPFE----FKLSDVLEDDTEHKVILTPEQEERLLAFMEKDKIYSKYYDEVVLL 220

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVR 207
              GLRISE   LT  +I      L I                    +  R +PL     
Sbjct: 221 LETGLRISEFCGLTT-HIDMQNKILNIDHQLLKDSEIGYYIETPKTKNGKRELPLTERAY 279

Query: 208 KAILEYYDLC---PFDLNLNIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGL 256
           +AI             +       LF    G P        +  G+ ++Y +     L  
Sbjct: 280 QAIQRILKNRGKAQPLIVGGYSNFLFLNREGLPKVAGNYEGMVRGLIKKYNKYHTDKL-- 337

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
             + T H+ RH++ T++ + G +  ++Q ++GH  ++ T   Y +   ++    +  +
Sbjct: 338 -PNITPHSFRHTYCTNMANRGMNPNTLQYLMGHANITMTLGYYAHGTFQSAKAELERL 394


>gi|15900995|ref|NP_345599.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae TIGR4]
 gi|111658171|ref|ZP_01408867.1| hypothetical protein SpneT_02000651 [Streptococcus pneumoniae
           TIGR4]
 gi|14972606|gb|AAK75239.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae TIGR4]
          Length = 387

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/299 (17%), Positives = 107/299 (35%), Gaps = 29/299 (9%)

Query: 33  KLTLQSYECDTR-QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
             T QS E   R   L     Y   K+T   ++Q    ++  + + +  +         S
Sbjct: 87  PNTRQSMEGLVRVHLLPVFGDYKLSKLTTPILQQ----QVNKW-ADKANKGEKGAFANYS 141

Query: 92  L--SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP---RALNEKQALTLVDNVLLHTS 146
           L  +  K  LKY    ++   +   ++   +K        + L+ K+    +D   L   
Sbjct: 142 LLHNMNKRILKYGVAIQVIQYNPANDVIVPRKQQKEKAAVKYLDNKELKQFLDY--LDAL 199

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI--------- 197
            ++ + +  +  +   L   G RISEAL+L   +I  +   + I    ++          
Sbjct: 200 DQSNYENLFDVVLYKTLLATGCRISEALALEWSDIDLESGVISINKTLNRYQEINSPKSS 259

Query: 198 ---RIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
              R +P+  +    + +Y +            +  +F     K       ++ + +   
Sbjct: 260 AGYRDIPIDKATLLLLKQYKNRQQIQSWKLGRSETVVFSVFTEKYAYACNLRKRLNKHFD 319

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWM 310
             G+  + + H  RH+  T +L      + +Q  LGH  L  T+  Y + N +N    +
Sbjct: 320 AAGVT-NVSFHGFRHTHTTMMLYAQVSPKDVQYRLGHSNLMITENTYWHTNQENAKKAV 377


>gi|295086030|emb|CBK67553.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 368

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 88/235 (37%), Gaps = 29/235 (12%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           I   S     S  ++ LK   K K+  E+    +  ++        L   +   L     
Sbjct: 156 ISRNSAAGYYSTFRALLKIAYKEKMLRENLNDFLEKIEWKEVKKEYLTLDEVKKL----- 210

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRIQG-KGDKIR 198
              +   K    + +++   +   GLRIS+ L L  ++     D    +RI   K +   
Sbjct: 211 --AATPCKIPVLKQASLFACM--TGLRISDILKLDWRDFEVGPDQGYYIRICTEKTETEA 266

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            +P+     +   E+               +F+G     L   +    ++Q     G+  
Sbjct: 267 TLPISQEALELCGEW-----------GTGKVFKG-----LTRSMTHHPLKQWIAEAGIRK 310

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             T H  RHS+A   +S G D+ ++  +L H  ++TTQIY ++ +    +   +I
Sbjct: 311 HITFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVTTTQIYADLVNSKKRETANKI 365


>gi|260361955|ref|ZP_05774960.1| phage integrase family protein [Vibrio parahaemolyticus K5030]
 gi|308114176|gb|EFO51716.1| phage integrase family protein [Vibrio parahaemolyticus K5030]
          Length = 394

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/297 (13%), Positives = 96/297 (32%), Gaps = 20/297 (6%)

Query: 20  NWLQNLEIERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +++   + +  + + T    ++          L +  +  ++   + +      + +++ 
Sbjct: 96  SFIDYFQRQVDIKEQTTSTSNHSIWLSARKHLLFYCGKHDLSFDELDKDWLDGFKYYLTN 155

Query: 78  RRTQK----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
               K    +   +     + +++ +    +  I  ++ +  + ++K   +    L   +
Sbjct: 156 EAKTKSDTALSRNTQSSYFNKVRAAINEAHREGIIRDNPLAQVTSIKAKTTKRVYLTLDE 215

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L           T+       +        G+R  +   LT   I    +  RI   
Sbjct: 216 VNAL---------AHTECRYPVLKSAFLFSCATGMRWCDIHRLTWSEIETFNNHKRI--- 263

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
                 V L     K++         +  L         +             + +    
Sbjct: 264 --IFDQVKLSHGDAKSLQYLDIPKSAESLLGSPKASHERVFKGLKYSSYINVELLRWALA 321

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            G+    T H  RH+FA   LS G D+ ++  +LGH  L TT+IY ++  +   + M
Sbjct: 322 AGISKHVTFHAGRHTFAVIQLSRGIDIYAVSKLLGHSELKTTEIYADIIEQRRMEAM 378


>gi|160944661|ref|ZP_02091888.1| hypothetical protein FAEPRAM212_02175 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443845|gb|EDP20849.1| hypothetical protein FAEPRAM212_02175 [Faecalibacterium prausnitzii
           M21/2]
          Length = 411

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/342 (16%), Positives = 122/342 (35%), Gaps = 63/342 (18%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + + + ++  L + T  +Y       L     +  +    + I ++ Y+++  F +    
Sbjct: 77  FDRYMSLKTNLRQTTRSNY-------LYMYDRFIRDTFGKKKIAEIRYSDVLQFYNYLLD 129

Query: 81  -QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-----RNLKKSNSLPRALNEKQA 134
            Q +   +L+   + +    +   + +I  ++    +     ++ +++  +  AL   Q 
Sbjct: 130 KQGLQTNTLESVHTLLHPTFQLAVRDEIVRKNPTDGVMAEIKKSSEQTTGVRHALTIPQQ 189

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-- 192
              ++++  H      W       +  +L G G RI EAL L   ++  ++ T+ I    
Sbjct: 190 RAFMEHIANHPVFCHWWP------LFTVLLGTGCRIGEALGLRWDDLDYERRTISINHSL 243

Query: 193 -------------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI------QL 227
                                  +R +P+  +V+ A  E       +   N         
Sbjct: 244 VYYPVGESRNSVLHISKPKTEAGVRTIPMFDTVKDAF-EMLHEEQKESGWNDVEIDGMTG 302

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLR---------------RYLGLPLSTTAHTLRHSFATH 272
            +F    G   NP    R I+++                R   L    +AH LRH+F T 
Sbjct: 303 FIFCNRFGNVPNPQSVNRAIKRIIADYNAGEEVEAKKQHREAVLLPDFSAHHLRHTFCTR 362

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
           L     +L+ IQS++GH  + TT  IY     +   +    +
Sbjct: 363 LCEKETNLKVIQSVMGHKDIQTTMDIYAEATEEKKQESFERL 404


>gi|120601140|ref|YP_965540.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
 gi|120561369|gb|ABM27113.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
          Length = 400

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 96/241 (39%), Gaps = 23/241 (9%)

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNLKK 121
             L    + A   K   Q +  +S+K  L+ ++  L+Y + R + +     +L       
Sbjct: 133 EDLRTGHVDALRRKIEAQGMSPQSVKHVLALLRRVLRYCEGRGLCSLPGRALLIFDLPPV 192

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
            N+    L  +QA  L++ +           D   +A++ L    G+R      L   ++
Sbjct: 193 DNAKTENLTHEQARALLEALDAD-------PDQNLAAMVRLALLTGMRRGALFGLQWGDL 245

Query: 182 MDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
               + + ++G   K  K   +P+    RK +L         +     L +F G  G   
Sbjct: 246 DFRNARITLRGATAKSGKTSSIPMTDDARKVLL--------GVQRTESLYVFPGRNGGK- 296

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
                +R++ ++R   GLP      H LRH+FA+ L S+G  L  I+ +L H    +T  
Sbjct: 297 -RVECRRFLNRIRLRAGLPDGFRPLHGLRHTFASWLASSGVSLLQIKDLLTHGDYRSTTR 355

Query: 298 Y 298
           Y
Sbjct: 356 Y 356


>gi|38637702|ref|NP_942676.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527040|gb|AAP85790.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 314

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 64/316 (20%), Positives = 111/316 (35%), Gaps = 28/316 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ   + L++ R L     ++       F+ F+  +    IT          +  A +  
Sbjct: 5   RQAVQEYLDLRRSLGFKLREA-GKALPDFVAFMERHRASFIT----------QALALLWA 53

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           ++   +        LS ++ F ++       T+     +       + P   +  +   L
Sbjct: 54  QQPSNVQPARWASRLSIVREFARHRSATDPRTQIPAPGLLPFSPKRARPYLYSSDEIRRL 113

Query: 138 VDNVLLHTSH--ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KG 194
           +   L         +        +  LL   G+R+ EA +L  Q+I    + L I+G K 
Sbjct: 114 LHAALQMPCRFARDELQPWTYYCLFGLLSVSGMRLGEARNLELQDIDLTAAILTIRGAKL 173

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            K R VPL  S    + +Y                LF   +G  L+ G   R+   L R 
Sbjct: 174 GKSRFVPLHASTCNVLADYIARRKRHWAGRPVSSYLFVSNQGNRLDSGEIHRHFYALSRQ 233

Query: 254 LGL-----PLSTTAHTLRHSFAT----HLLSNGGD----LRSIQSILGHFRLSTTQIYTN 300
           +GL           H +RH FAT        +G D    L  + + LGH  +  TQ Y N
Sbjct: 234 IGLRGAADSHGPRLHDMRHVFATNTLLRWYRSGQDPERRLPILSAYLGHVHIEDTQWYLN 293

Query: 301 VNSKNGGDWMMEIYDQ 316
            + +   + M  +  +
Sbjct: 294 ASPELMREAMRRLEQR 309


>gi|253774150|ref|YP_003036981.1| integrase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|297520846|ref|ZP_06939232.1| integrase family protein [Escherichia coli OP50]
 gi|242376639|emb|CAQ31349.1| ybl28 [Escherichia coli BL21(DE3)]
 gi|253325194|gb|ACT29796.1| integrase family protein [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|332342181|gb|AEE55515.1| phage integrase [Escherichia coli UMNK88]
          Length = 338

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 93/239 (38%), Gaps = 29/239 (12%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + S++  +     ++    S + S F +  +  + +  + + NMR    +      L  +
Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q + L+         + K  D   + ++ +    G R  EA++LT   +   + T  ++ 
Sbjct: 179 QIVELL--------ADCKRQDPILALVVKICLSTGARWREAINLTRSQVTKYRITF-VRT 229

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+   + + I+       F                       FQ      + 
Sbjct: 230 KGKKNRSIPISKELYEEIMALDGFNFF-------------------TDCYFQFLSVMEKT 270

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++   +    + 
Sbjct: 271 SIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHLETALR 329


>gi|225377376|ref|ZP_03754597.1| hypothetical protein ROSEINA2194_03024 [Roseburia inulinivorans DSM
           16841]
 gi|225210777|gb|EEG93131.1| hypothetical protein ROSEINA2194_03024 [Roseburia inulinivorans DSM
           16841]
          Length = 329

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 99/265 (37%), Gaps = 23/265 (8%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLK-RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           +LS   + A+  KR  +    RS +   L     FL                 +    S 
Sbjct: 54  ELSKEIVLAWSQKRPNENDTTRSARIMYLQHFAIFLNSQGYSGYIAPP-----QKYHFSQ 108

Query: 124 SLPRALNEKQALTL-VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
                  + +   L +    +  +  + +       +  +LYGCG RISE L+LT  ++ 
Sbjct: 109 HTAYVFTKAEIKKLFISLDQMEYTPNSPYRHLSFPLLYRMLYGCGFRISELLNLTVGDVD 168

Query: 183 DDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
            ++  + I   K    R+VP+  ++      Y +    D   +   P F    G      
Sbjct: 169 IERGIIHIHDSKNGNERLVPMAATLAARCRTYTESVHNDHEED--FPFFFKKDGTGYCVS 226

Query: 242 VFQRYIRQLRRYLGLP---LSTTA--HTLRHSFATHLLSN----GGDLRS----IQSILG 288
             +R+ R+     G+P          H LRH+F  H L+     G DL +    +   +G
Sbjct: 227 NIERHFREQLWLAGIPYLGKELGPRVHDLRHTFICHRLNQWAKEGVDLTAMLPILSKYVG 286

Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEI 313
           H  +++TQ Y  + ++   D + ++
Sbjct: 287 HTGIASTQYYLKLTAEAFPDVLEQM 311


>gi|125624671|ref|YP_001033154.1| IntTn5276 protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493479|emb|CAL98456.1| IntTn5276 protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071463|gb|ADJ60863.1| IntTn5276 protein [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 379

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 99/268 (36%), Gaps = 30/268 (11%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           EK +   + +++  +I++++ +     I + + K     I+   +Y +       +    
Sbjct: 105 EKFSKYKVSEVTTADIQSYLMEL---DIANSTRKNRRIYIRILFRYAENIGYIDSNPADK 161

Query: 116 MRNLKK-------SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
           +   K          +  + L++++  +++         ++   D R +  +  ++  G 
Sbjct: 162 VVLPKVRLEIETLERANEKFLSKEEMSSVLIFC------KSYKKDIRYTLAMEFIFLTGC 215

Query: 169 RISEALSLTPQNIMDDQSTLRIQGK------GDKIRIVPLLPSVRKAILEYYDLCP---- 218
           R  E  S+  Q+I      LRI             R++    +V                
Sbjct: 216 RFGEFASIRYQDIDFKNKLLRIDHTLEYRVAKYDDRVIQTPKTVGSIRTISLSNRCLEII 275

Query: 219 --FDLNLNIQLPLFRGIRGKPLNPGVFQRYIR-QLRRYLGLPLSTTAHTLRHSFATHLLS 275
             F  N      +F    G      VF ++I    ++ LG       H LRHS  + L+ 
Sbjct: 276 DYFQKNCLDDKFVFVNAVGGIFRQPVFYKFICDNCQKVLGNERKYGIHLLRHSHVSLLVE 335

Query: 276 NGGDLRSIQSILGHFRLSTT-QIYTNVN 302
            G  +++I   +GH   S T +IY++++
Sbjct: 336 LGVPIKAIMERVGHRDESITLRIYSHIS 363


>gi|265764112|ref|ZP_06092680.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
 gi|263256720|gb|EEZ28066.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
 gi|301162792|emb|CBW22339.1| putative phage integrase [Bacteroides fragilis 638R]
          Length = 403

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 59/332 (17%), Positives = 123/332 (37%), Gaps = 38/332 (11%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYEC------DTRQFLIFLAFYTEE 56
            N++PE +      ER+     L + R     +  +Y        + RQF+        +
Sbjct: 97  ANSVPEYLLQAGEVERER----LRV-RSKEINSTSTYRQSKTTQLNLRQFI---ESRGMK 148

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
            I    I +      + F+ K    + G   +   L  +   +     R+I   + I ++
Sbjct: 149 DIAFSDITEEFAESFKVFLKKELGHRNGH--VNHCLCWLNRLIYIAVDREILRGNPIEDV 206

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              +K     R ++  +   +++     T      ++      ++     GL  ++  +L
Sbjct: 207 AYERKETPKLRHISRSELKRMME-----TPLPDPMMELARRTFIFSSL-TGLAYADTRAL 260

Query: 177 TPQNI---MDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
            P++I    + +  +RI+  K D    +PL P   + +  Y          +   P+F  
Sbjct: 261 HPRHIGTTSEGRRYIRIRRAKTDVEAFIPLHPIAGQILELYNT-------TDDDRPVFPL 313

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                    V       +   LG+  + + H  RHSF T  L+ G  + SI  ++GH  +
Sbjct: 314 PV-----RDVLWYEAHGMGVALGMKENLSYHMARHSFGTLTLTAGIPIESIARMMGHTNI 368

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324
            +TQ+Y  V  +     M  + ++  P+  ++
Sbjct: 369 DSTQVYAQVTDRKISSDMNRLMERRKPAAGKE 400


>gi|253566956|ref|ZP_04844408.1| integrase [Bacteroides sp. 3_2_5]
 gi|251944519|gb|EES85008.1| integrase [Bacteroides sp. 3_2_5]
          Length = 392

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 100/279 (35%), Gaps = 35/279 (12%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT--------QKIGDRSLKRSLSGI 95
           + FL F  F   +     T  +++      F+   R+        +K+   ++    S  
Sbjct: 133 QAFLHFDRFVGGK----CTFGEVTVELCNKFLEYLRSTPQAIHQKRKLHTNTIASYWSAF 188

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
              L    + +   E+    +  ++   S    L+ ++   +          ET      
Sbjct: 189 LGTLHTAHRDRKIKENPCPYLERVQTIPSDKVGLSAEELARV---------AETPCEIPV 239

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
                      GLR S+  + + + I  +   TL I  +  K + +   P   +A+    
Sbjct: 240 LKTAFLFSCLTGLRKSDVKTFSWEMIQPEADGTLYITTRMQKTKQIIYNPIGEEALQ--- 296

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                 ++ + +  +F G +       + Q   ++  +  G+    T H  RH+F +  L
Sbjct: 297 -----LIDGSREGLVFPGFKD-----SMTQAPFKKWIKAAGITKKLTFHGARHTFCSLQL 346

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             G D R++Q ++GH  L+TTQ Y +  +    +    I
Sbjct: 347 DAGTDSRTVQELVGHKNLATTQRYLDSVNSRKKEAANRI 385


>gi|139438172|ref|ZP_01771725.1| Hypothetical protein COLAER_00713 [Collinsella aerofaciens ATCC
           25986]
 gi|133776369|gb|EBA40189.1| Hypothetical protein COLAER_00713 [Collinsella aerofaciens ATCC
           25986]
          Length = 308

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 82/210 (39%), Gaps = 16/210 (7%)

Query: 103 KKRKITTESNILN--MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
               +          ++  +      + LN+ +   ++ ++ L       W       ++
Sbjct: 90  VDEGLIPRDPTRKAIIKGKQPRAKKIKYLNQFELHAMLGDLDLSGGPSWDW-------LI 142

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEYYD 215
            ++   GLR SEAL LTP++      TL +    D       +P     SVRK  L++  
Sbjct: 143 LIVAKTGLRFSEALGLTPEDFDFAHQTLSVNKTWDYKNGGGFVPTKNASSVRKVQLDWQL 202

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
           +      L    P         +        + +  + +G+P+  + H LRH+ A+ LL 
Sbjct: 203 IMQLSGLLKDLPPTEPIFAKGKVYNSTANSVLARHCKNVGVPV-ISVHGLRHTHASLLLF 261

Query: 276 NGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
            G  + S+   LGH  ++TTQ  Y +V  +
Sbjct: 262 AGVSIASVSRRLGHASMTTTQETYLHVIQE 291


>gi|120401481|ref|YP_951310.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|120404557|ref|YP_954386.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|120406443|ref|YP_956272.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119954299|gb|ABM11304.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119957375|gb|ABM14380.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119959261|gb|ABM16266.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 647

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 67/319 (21%), Positives = 114/319 (35%), Gaps = 47/319 (14%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI------- 83
           L   +++S   D   F  +L  +  +   + ++R L  + I  ++   RT+         
Sbjct: 232 LRPKSVESLINDLLPFAEYLTAHHPD---LTSLRGLDRSCIEGYLKWNRTRGWRGQRAAA 288

Query: 84  -GDRSLKRSLS-----GIKSFLKYLKKRKITTESN---ILNMRNLKKSNSLPRALNEKQA 134
              R++  +++      +++ L  +             +      K    LPRAL     
Sbjct: 289 GAGRTVSAAVAQSAVLSLRNLLDDITAWGWAQAPPRRLVFAADVPKLDQPLPRALAPD-V 347

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ---NIMDDQSTLRIQ 191
              V N + H       I       L +L G GLR  E L L      +     + L++ 
Sbjct: 348 DAAVMNAVAHLQDPFARIG------LTVLRGAGLRAGELLDLELGSIIDYGPAGTWLKVP 401

Query: 192 -GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN------IQLPLFRGIRGKPLNPGVFQ 244
            GK    R+VPL  +   A+ E+  L      L       +   LF    G+ L     +
Sbjct: 402 LGKLATERMVPLSAATLAALDEWVALRGTHRPLPHPRTGVLTDFLF-TRHGRRLGYTRLR 460

Query: 245 RYIRQLRRYLGLPLS------TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
             +       GL          T H LRH++AT L + G  L+++ S+LGH     T  Y
Sbjct: 461 NGLLTAAESAGLHRPDGGVLMVTPHQLRHTWATELANAGMSLQALMSLLGHVTPQMTIRY 520

Query: 299 TNVNSKNGGDWMMEIYDQT 317
             + S      +   YD+ 
Sbjct: 521 ATLAS----PTLRAAYDEA 535


>gi|325678355|ref|ZP_08157975.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324109856|gb|EGC04052.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 403

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/308 (17%), Positives = 106/308 (34%), Gaps = 44/308 (14%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS--------KRRTQKIGDRSLK 89
           ++   T Q    LA      +    I +++  +I+ FI+        KR  + +  ++++
Sbjct: 90  NHRSTTLQREHLLAGRIYPALGHLRIDKITARDIQKFINSLAKPGANKRNGKPLSQKTMR 149

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKS------NSLPRALNEKQALTLVDNVLL 143
             LS I S  +Y  +  + + +    +   K            + +  K+       +L 
Sbjct: 150 HHLSFISSIFEYAIRLDMISTNPCSKVIIPKIDANGKVYKKPEKHIYTKEQAKEFMTILR 209

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI------ 197
                      +      L    G R  E L +  +NI  +  T+ I    +        
Sbjct: 210 EAP-------IKYRVFFTLAIYTGCRRGEILGIEWKNIDFENRTIMIDHTSNYTAKNGIY 262

Query: 198 ----------RIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGV 242
                     R+V L P+V K +  Y                    LF    G P++P  
Sbjct: 263 TDATKTDKSTRLVDLPPTVIKLLKAYKHDQDSYKANLGDKWQEHDRLFTKWDGAPMHPAT 322

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNV 301
              ++++       P     HTLRH FA+  +  G D  ++ ++LGH    TT   Y++ 
Sbjct: 323 PYSWLKKECERRSFPFYGV-HTLRHFFASVEIEAGVDPTTVAAMLGHSTPQTTLTTYSHY 381

Query: 302 NSKNGGDW 309
            +++    
Sbjct: 382 FAESKKRA 389


>gi|253563308|ref|ZP_04840765.1| predicted protein [Bacteroides sp. 3_2_5]
 gi|251947084|gb|EES87366.1| predicted protein [Bacteroides sp. 3_2_5]
          Length = 434

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/290 (16%), Positives = 111/290 (38%), Gaps = 26/290 (8%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR---SLK 89
           + T  +Y+   R    F      ++I I  I +    +   ++ KR T+        S +
Sbjct: 141 ESTWNTYQTTLRSLKEF-----RQEIRIIDISKKLLDDFDKYLIKRGTENHKGTVEGSRR 195

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
             +  I++ ++Y++  +I  ++    +   +         L   +   +   +     ++
Sbjct: 196 NRIKHIRAVIRYIEDLRIPIKNPYKTLDLAIPNDKENNIFLEIDELRRMFCLI-----NK 250

Query: 149 TKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLP 204
            K        +L  L+ C  G+RI +AL++   ++  ++S   L       K  +   + 
Sbjct: 251 VKEKSIEYRVLLMYLFSCVTGIRIGDALAVKWGDLDVERSPIILSFVAIKTKKCVSVPIF 310

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG-VFQRYIRQLRRYLGLPLSTTAH 263
            + + +L Y      D        + R  +     P  +  + +R+L +   +    T H
Sbjct: 311 PLAEEVLMYAPEGNID-------NVERNKKIFHTYPQELINKTLRELAKKANIDKHITFH 363

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           + R +FAT  +  G  L  +++ +GH    TT+ YT  +S        ++
Sbjct: 364 SSRRTFATLAIIQGIPLNDLKNYMGHSSTKTTERYTKWSSSLAEYSAQKV 413


>gi|111026341|ref|YP_708624.1| integrase/recombinase [Rhodococcus jostii RHA1]
 gi|110825184|gb|ABH00466.1| possible integrase/recombinase [Rhodococcus jostii RHA1]
          Length = 406

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/359 (15%), Positives = 114/359 (31%), Gaps = 71/359 (19%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
            S   ++    + ++L+     S+ T++SY  D  ++  FL           +  + +  
Sbjct: 37  PSGAAVEAVSAYFRDLQAADR-SEATIRSYGMDLLRWFRFLWAIE------VSWNRATRA 89

Query: 70  EIRAFISKRRTQK----------------------IGDRSLKRSLSGIKSFLKYLK---- 103
           + R F                                      S + ++ F ++      
Sbjct: 90  QARDFCRWMLVAGKPSRPHWRRPQEVPDPSSSRDAYAPSVRAHSETVLRGFYEFHLDAGS 149

Query: 104 ---------------KRKITTESNILNMRN-------LKKSNSLPRALNEKQALTLVDNV 141
                          +R     + +   RN           + +PR++++ +   +    
Sbjct: 150 GPLVNPFPLDRSRRGRRAHAHHNPMEPHRNERTGRYRPVVPDRIPRSVSDAEFNEIF--- 206

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI-RIV 200
                   +    R+ A++      G R SE LS+T   +   +  + +  KG +  + +
Sbjct: 207 -------ARLPSNRDRALVAFYVSTGARASELLSVTQGGVDPGRQLITVIRKGSREAQEL 259

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK--PLNPGVFQRYIRQLRRYLGLPL 258
           P        +  Y            + PL+   R    PL      R   +     G   
Sbjct: 260 PASTDAFVWLRLYQVEMAGLTLKGRRQPLWWTSRTPVRPLTYHAVHRMFERAVDAAG--S 317

Query: 259 STTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           + T H LRH+ A  +  +    L  +Q +LGH  L+TTQ Y     ++    ++  + Q
Sbjct: 318 TVTLHALRHTAAYRMAEDPELPLTDVQFVLGHALLTTTQRYLTPRKQDVIRRILAHHAQ 376


>gi|89147570|gb|ABD62644.1| integrase [uncultured bacterium]
          Length = 163

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/111 (33%), Positives = 52/111 (46%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +G G+      L      A   +     F        P    +R   +     Q  ++  
Sbjct: 52  RGGGEVYLPFALSRKYPNAKRAWSWQYVFPAAKLSVDPRSHDVRRHHVQEKNLQNAVKIA 111

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            R  G+    + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 112 VREAGITKPASCHTLRHSFATHLLENGSDIRTVQELLGHKDVSTTMIYTHV 162


>gi|307251328|ref|ZP_07533245.1| Integrase [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306856634|gb|EFM88773.1| Integrase [Actinobacillus pleuropneumoniae serovar 4 str. M62]
          Length = 281

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/305 (19%), Positives = 116/305 (38%), Gaps = 44/305 (14%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           E  KE + +   L  E   +K T+ SY      F +F             + +++    +
Sbjct: 14  EQKKELELFEMYL-FEEERAKNTIISYIYGVASFFLFGGE----------LEKVNLVRFK 62

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR---AL 129
            ++    T K   +++   L+G+ ++L +  +  +        ++ LK + S P     +
Sbjct: 63  KYL----TDKYEPQTVNLRLAGLNNYLIFKGREDL-------KIKMLKMTRS-PFTDGVI 110

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +E +   L+           K  + +   I+  L   G RISEA+ +T Q+ M   + + 
Sbjct: 111 SEDEYQQLL--------AVAKIRNKKVYFIIRFLATTGARISEAVRVTKQDFMRGYAEMH 162

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
            +GK    R + +  S      E      F  +L  +  LF     K L+       ++ 
Sbjct: 163 TKGKH---RRINIPRSFIDESNE------FFADLEDKDFLFLNKYEKQLSTRGIANLLKD 213

Query: 250 LRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +    G+       H  RH FA   L +  +L  +  +LGH  +  T +Y  ++     +
Sbjct: 214 IAVKAGVRREVVHPHNFRHFFAIQFLKHNNNLALLADLLGHSSVDMTALYARMSQGQQRE 273

Query: 309 WMMEI 313
            + + 
Sbjct: 274 ALNDA 278


>gi|296162871|ref|ZP_06845652.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886908|gb|EFG66745.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 329

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 60/276 (21%), Positives = 100/276 (36%), Gaps = 27/276 (9%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102
            R F   +               L+   + A+    R +    R+  R L  +++FL++L
Sbjct: 36  LRSFARHVHAAGHRG-------ALTVELMAAWARSDRREGNDPRTWARRLKRLRTFLRWL 88

Query: 103 KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
           ++ +  TE    ++         P   +E++ + L+               A    +  L
Sbjct: 89  QQFEPRTEVPDDSIFGRLPQRQAPHIFSEEEIVDLLARSRRLGPSPA-LRGAVYETLFGL 147

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           +   GLRI EAL+L   ++      L I+  K  K R VP+ PS    +  Y        
Sbjct: 148 IAATGLRIGEALALCNDDVDLKDGMLTIRRTKFGKSRQVPMHPSTVGCLRRYCLQRDLTE 207

Query: 222 NLNIQL-PLFRG----IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT-----LRHSFAT 271
               +  P F G     RG PL      R  R L + LG       H      LRH+F  
Sbjct: 208 GTPAEDGPFFVGTRGRRRGLPLGVRQVHRVFRDLSQQLGWANRGAHHAPRIHDLRHTFVV 267

Query: 272 H----LLSNGGDLR----SIQSILGHFRLSTTQIYT 299
                  ++G D+     S+ + +GH  ++ T  Y 
Sbjct: 268 RRIVEWQAHGVDIDQAMLSLSTYVGHTMVTNTYWYL 303


>gi|156976230|ref|YP_001447136.1| integrase [Vibrio harveyi ATCC BAA-1116]
 gi|156527824|gb|ABU72909.1| hypothetical protein VIBHAR_05002 [Vibrio harveyi ATCC BAA-1116]
          Length = 345

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 100/254 (39%), Gaps = 32/254 (12%)

Query: 72  RAFISKRRTQK----------IGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLK 120
           R +++ R  +           I   +    L  +K   K  +K  +    + +  +  +K
Sbjct: 107 RDYLAYRAARTPYRGKNKSIEISPTTHNLELIYLKGMFKKLIKYNQWKYPNPLEAIEPIK 166

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
            S      L + Q     D  L +     K    +   I  +    G RISEAL+LT   
Sbjct: 167 TSEKHLAYLTKPQIDEFFDE-LQNCKRVIKASIPQIIVIAKICLATGARISEALTLTRTQ 225

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I + + T     KG + R VP+ PS+ + IL+         N + +              
Sbjct: 226 ITEFKLTYT-DTKGKRNRSVPISPSLYQEILDIAVSDHDIFNTSYKDA------------ 272

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               RYI++      +P     H LRH+FA+H + N GD+  +Q ILGH ++  T  Y++
Sbjct: 273 ---WRYIKRALPE-HVPNGQATHVLRHTFASHFMMNKGDILVLQRILGHTKIEQTMAYSH 328

Query: 301 VNSKNGGDWMMEIY 314
              ++    M  ++
Sbjct: 329 FAPEHL---MQAVH 339


>gi|81428201|ref|YP_395201.1| site-specific recombinase, prophage lsa1 integrase [Lactobacillus
           sakei subsp. sakei 23K]
 gi|78609843|emb|CAI54890.1| Site-specific recombinase, prophage lsa1 integrase [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 385

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 89/248 (35%), Gaps = 36/248 (14%)

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE--TKWIDA 154
           +  KY   +    ++    +   KK       L+++  L   D   L T         D 
Sbjct: 141 AIFKYAILQGYIKDNPCTRVTMPKK-------LDKEDTLNFWDKDQLKTFFNGIDPVNDL 193

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------------GDKIR 198
               +  +L   G+R  E LSLT  ++   ++TL I                       R
Sbjct: 194 EKYTLFRVLAFTGIRRGECLSLTWDDLNVQKATLDINKTLTHGDKGRLLIQPTKTKKGTR 253

Query: 199 IVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRR 252
           ++ L  S    + +++            N+N    L F   +    +     +++R L  
Sbjct: 254 VISLDESTLLYLKKWHLEQRRMYLMLGYNINKSNQLIFATSKNTFKSLNTPSKWLRALID 313

Query: 253 YLGLP----LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGG 307
                     S T H  RHS A+ L S G  ++ +Q  LGH    TT  IYT+V  K G 
Sbjct: 314 DANKSGANLPSITVHGFRHSHASALFSAGASIKEVQERLGHEDAQTTLNIYTHVTEKQGQ 373

Query: 308 DWMMEIYD 315
           + + ++ +
Sbjct: 374 EAVQKLVN 381


>gi|307578024|gb|ADN53643.1| integrase [Staphylococcus aureus]
          Length = 381

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/323 (16%), Positives = 110/323 (34%), Gaps = 50/323 (15%)

Query: 25  LEIERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           L +E+   + T++  +Y+     F   +  + ++      I++++    +  I+K   +K
Sbjct: 76  LWLEQY--QNTVRESTYQRVLTLFDTAILEHFQD----VPIKKITVPYCQKVINK-WNKK 128

Query: 83  IGDRSLKRSLSGIKSF----LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             D      +  I+ +     KY    KI  ++   + +  +K  +   A  +  +   +
Sbjct: 129 YSD------IKAIRIYTSNVFKYAVSLKIIVDNPFAHTKAPRKKEAQQDASTKYYSSDEL 182

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG---- 194
              L          D    AI   L   G R  E ++LT ++I   + T+ I        
Sbjct: 183 KQFLTFVED-----DPLYYAIFRTLAFTGFRRGELMALTWKDIDFTKQTISINKTCARGA 237

Query: 195 ------------DKIRIVPLLPSVRKAILEYYDLCPFDL------NLNIQLPLFRGIRGK 236
                          R + +       +  +      +         +    +F  +R  
Sbjct: 238 NYKLIIQEPKTKSSHRTISIDDKTASVLKSWRTHQRVESLKYGHNTSDKHQHVFTTVRDN 297

Query: 237 -PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            PL P    + +  +            H  RH+  + L   G  ++ +Q  LGH  + TT
Sbjct: 298 KPLYPEHCNKALDLICEKNSF-KRIKVHGFRHTHCSLLFEAGLSIQEVQDRLGHGDIKTT 356

Query: 296 Q-IYTNVNSKNGGDWMMEIYDQT 317
             IY +V  K   D + + + + 
Sbjct: 357 MDIYAHVTEKQ-RDQVADKFAKY 378


>gi|306823936|ref|ZP_07457310.1| phage integrase [Bifidobacterium dentium ATCC 27679]
 gi|309802320|ref|ZP_07696427.1| site-specific recombinase, phage integrase family [Bifidobacterium
           dentium JCVIHMP022]
 gi|304552934|gb|EFM40847.1| phage integrase [Bifidobacterium dentium ATCC 27679]
 gi|308220920|gb|EFO77225.1| site-specific recombinase, phage integrase family [Bifidobacterium
           dentium JCVIHMP022]
          Length = 367

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 106/287 (36%), Gaps = 40/287 (13%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSF 98
           Y  D          +       + I  + ++EI+ ++S+   ++    ++ R+   +K  
Sbjct: 83  YYADLE---CSWRVHVCNAWGNREIASIRHSEIQTWVSELAKKRSATITI-RAHGVLKGV 138

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           L    +      +     +  +K       L   Q + L                    A
Sbjct: 139 LDLAVRDGSIRRNPADGCQLPRKQRKERTHLTPAQVIDL------------AHAAGTYQA 186

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------GKGDKI--------RIVPLLP 204
           ++  L  CGLR  EA +L  +++    + LR++      GK            R VP+  
Sbjct: 187 LILTLGFCGLRWGEAAALRVKHVDTQNNRLRVRLSWVRSGKKHFEGAPKTWEVRDVPVPD 246

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR--RYLGLPLSTTA 262
            V  AI E  +          +  +F    G  L     + +    R  R  G+P + T 
Sbjct: 247 QVMSAIKEQCE------GKGPEDLVFTAPSGGHLREQSAKNHGWYARALRDSGVP-TLTC 299

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
           H LRH+ A+  +S+G +++++Q +LGH   + T   Y ++   +  D
Sbjct: 300 HDLRHTAASIAISSGANVKAVQRMLGHKNAAMTLDTYADLFDTDLDD 346


>gi|237750988|ref|ZP_04581468.1| phage integrase [Helicobacter bilis ATCC 43879]
 gi|229373433|gb|EEO23824.1| phage integrase [Helicobacter bilis ATCC 43879]
          Length = 370

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 59/304 (19%), Positives = 127/304 (41%), Gaps = 21/304 (6%)

Query: 25  LEIER-GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83
           LE+ER    K TL  YE            +    I    +++ S   I   I K +   +
Sbjct: 77  LELERENCKKSTLIRYEN-------VFKKHIVSSIGNMRLQEFSPK-IMKVIFKDKFSHL 128

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTE-SNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
             ++   ++  ++    Y    +I T+ + +  +++ KK  + P+ LN+   L L   + 
Sbjct: 129 SFKNKGIAICVLRKIFDYAICDEIFTDSNPMQIIKHKKKEYAEPQRLNDP--LNLNQVMD 186

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK------ 196
           +    +TK +D R      L    G+R++E L+L   +I  +++T+++     +      
Sbjct: 187 ILKHLKTKDMDNRLKMYFQLALLTGMRVNEILALKYSDINVEKNTIQVYKSLQQGTNTIS 246

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
                      + +     L    L+ N    +F   RG  ++    ++Y +++ + L +
Sbjct: 247 TTKTENGKRNIQILPFLKSLLKDTLDTNGSGYIFLNKRGGFISDSTMRKYFKKILQELNI 306

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYT-NVNSKNGGDWMMEIY 314
               T ++ RH+FA+ +++ G D+  +  +LGH  ++TT   Y  ++            Y
Sbjct: 307 GDR-TLYSTRHTFASIMIAYGEDIAWVSKMLGHKDIATTCNFYVEHIRDDKTRGLCFLEY 365

Query: 315 DQTH 318
           ++ H
Sbjct: 366 EKQH 369


>gi|27375981|ref|NP_767510.1| site-specific integrase/recombinase [Bradyrhizobium japonicum USDA
           110]
 gi|27349120|dbj|BAC46135.1| bll0870 [Bradyrhizobium japonicum USDA 110]
          Length = 329

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/328 (17%), Positives = 108/328 (32%), Gaps = 45/328 (13%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLS---KLTLQSYECDTRQFLIFLAFYT--------- 54
           P   SF+     + W ++LE E   S     T  + +    + L   A            
Sbjct: 22  PRAKSFDTKTAAERWARDLEAEADRSGWVADTRAAEKTTLGELLSRYANEVTPAKRGAVS 81

Query: 55  ---------EEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR 105
                       I+ +T+ +L+ +++  +    R + +   ++ R L+ I   ++   + 
Sbjct: 82  EKARINSIVRCPISHRTLAKLTSSDVAGY-RDERLKTVAPATVVRELNTISHAIEVATRE 140

Query: 106 K--ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
                  + +  +R         R L E +   L+D      +   K        ++ L 
Sbjct: 141 WGLWVPRNPVKLVRRPPVPRGRTRRLKEGEEQRLLDACDRGRTPLLKP-------LIILA 193

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
              G+R  E L L  ++I   +    +   K    R VPL     + + E          
Sbjct: 194 IETGMRRGELLDLRWEHIDLKRGVAHLPLTKNGDSRDVPLSCRAVQTLQELRSAGV---- 249

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
                   R  R   +     +     LR   G+      H LRH   + L   G ++  
Sbjct: 250 --------RHDRVFSMTGNSVRLAFEHLRVRAGMS-DLHFHDLRHEAISRLFEKGLNIAE 300

Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           + +I GH  L   Q YT++ + +    +
Sbjct: 301 VSAISGHRELKMLQRYTHLRAVDLVARL 328


>gi|239927543|ref|ZP_04684496.1| phage integrase family protein [Streptomyces ghanaensis ATCC 14672]
          Length = 387

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/302 (19%), Positives = 105/302 (34%), Gaps = 45/302 (14%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           +  L   R  S  T ++Y  D R+     A     +     I   +   IRA+  +   +
Sbjct: 67  MDWLSSTRRGSLQTKRNYVDDIRRVWGGYAQELGHERFALGI--FNPDHIRAWRLRMEGR 124

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK-----KSNSLPRALNEKQALT 136
            +   ++ R L+ + S   Y  ++     + +      K      S S P  L   +   
Sbjct: 125 GVPSTTISRYLNALSSLHTYAAEKIDLPRNPVTQDDRPKVDKGNTSRSTP-VLEVDEVKA 183

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP--QNIMDDQSTLRIQGKG 194
           + +             +  ++ I+ LLY    R++E ++     +     +S L +  K 
Sbjct: 184 VANA----------AENEFDALIVLLLYTLAGRVTEMVAADVTKRIERGRRSYLDVTRKE 233

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            K RI+PL  +V + +  +            + PL     G+ L+     R + +L R  
Sbjct: 234 HKERILPLPTTVAELLDAH-------TAGRTEGPLLLDKDGRRLDRHDVARLLTRLGRKA 286

Query: 255 ------------------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
                              +    T H LR S  TH+L  G  L  +Q+   H   +TT 
Sbjct: 287 RVLTCPTVDKPGHTFTKCKVCRKLTPHVLRASRITHMLDAGEPLAEVQAFADHDNPATTV 346

Query: 297 IY 298
            Y
Sbjct: 347 GY 348


>gi|238762053|ref|ZP_04623026.1| Integrase [Yersinia kristensenii ATCC 33638]
 gi|238699781|gb|EEP92525.1| Integrase [Yersinia kristensenii ATCC 33638]
          Length = 349

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/323 (17%), Positives = 112/323 (34%), Gaps = 51/323 (15%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI--------TIQTIRQLSYTE 70
           + WL +    R LS++    Y    R        Y + K+           ++    +  
Sbjct: 49  KPWLGDAPDRRTLSEVAELWYNLHGRSLAAGEKVYKKLKLIVAALGNPPAHSLSGKDFAH 108

Query: 71  IRA-------FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILNMRNLKKS 122
            R+       + S++  +     ++    S +      L +       + + N+R    +
Sbjct: 109 YRSKRLSGEIYFSEKWKKGAKPVTVNLEQSFLSGMFSELARLGEWNLPNPLDNLRKYAVA 168

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
                 L  +Q  TL+       +            ++ +    G R +EA  LT   + 
Sbjct: 169 EKEMAWLTHEQIKTLLAACSSGRADLP--------MVVKVCLSTGARWNEAEKLTRSQVS 220

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
            ++ T  I+ KG K R VP+   +   +                      + G  L    
Sbjct: 221 PNKITF-IRTKGKKNRSVPISKELHDEL--------------------VALEGDRLFSEC 259

Query: 243 FQRYIRQL-RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           + R++  +    + LP     H LRH+FA H + +GG++  +Q ILGH  +  T  Y + 
Sbjct: 260 YFRFMAAINTTDIKLPAGQLTHVLRHTFAAHFMMSGGNILVLQRILGHSDIQMTMRYAHF 319

Query: 302 NSKNGGDWMMEIYDQTHPSITQK 324
             ++    +     Q +P  T K
Sbjct: 320 APEHLETAV-----QFNPLTTMK 337


>gi|223369820|gb|ACM88779.1| integrase [uncultured bacterium]
          Length = 163

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 50/94 (53%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A  ++     F  +     P    +R   +    +QR I++      +    T+HT RH
Sbjct: 69  QAGKQWRWFWIFPSDHESTDPRSGVVRRHHMYEQTYQRAIQRAATEAKITKRVTSHTFRH 128

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 129 SFATQLLESGYDIRTVQELLGHSDVSTTMIYTHV 162


>gi|170761057|ref|YP_001787301.1| phage integrase family site specific recombinase [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169408046|gb|ACA56457.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 357

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/299 (18%), Positives = 117/299 (39%), Gaps = 34/299 (11%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L++  + +     T++SY     +F         +++    + +++  +I+  +     
Sbjct: 75  FLEHEILYKE--PGTIRSYRFALNRF---------KELNDLELTKINTMQIQTCVDNMIK 123

Query: 81  QKIGDRSLKRSLSGIKSFL-KYLKKRKITTESNILNMRNLK-KSNSLPRALNEKQALTLV 138
             +   + K  +S + +     +K   +  ++ +  ++ LK K     +AL++ +   L+
Sbjct: 124 TGLASSTTKLYVSKLNTIFSNAIKPYNLIAKNPVDGIKILKSKKQEKIKALDKAKLKDLL 183

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
                      K    +      +   CGLRI E L LT  +I +  STL +  +  K++
Sbjct: 184 ----------GKITYKKYYIASLIAATCGLRIGEVLGLTWADIDEINSTLTVNKQWKKLK 233

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF--------QRYIRQL 250
                    K+      + P   N   +L  F+      ++  +          R +R  
Sbjct: 234 SGNWGFGSVKS-KNSNRVVPISPNTLKELKNFKKNFVTDIHNRIIVCADSINLSRGLRDC 292

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            +  G   + + H LRH++AT L+ NG D ++   +LGH    T + Y +VN       
Sbjct: 293 YKRNG--YNISIHDLRHTYATMLIGNGVDFKTAAKLLGHTIEMTMKTYAHVNDDMINKA 349


>gi|116662238|ref|YP_829292.1| phage integrase family protein [Arthrobacter sp. FB24]
 gi|116613002|gb|ABK05711.1| phage integrase family protein [Arthrobacter sp. FB24]
          Length = 363

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 61/321 (19%), Positives = 113/321 (35%), Gaps = 44/321 (13%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GLS   +++      +F   +            +   +  +   F++++R       +  
Sbjct: 41  GLSDSHIRNTRSTIIEFARSVTG---------PLWAATCQDADRFLAEQRRLGRSVSTRA 91

Query: 90  RSLSGIKSFLKYLKKR---------KITTESNILNMRNLKKSNSLPRAL---NEKQALTL 137
                +  F +++  R          +  E  I    N +   SL +     ++ +    
Sbjct: 92  GKAGTLALFYEFMISRYQGRIHRLTGVLVEQPIDEF-NRQAGASLGKVRVPPSDAEIDAF 150

Query: 138 VDNVLLHTSHETKWI-DARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQ-- 191
                       K++  AR+     L    GLRI+E + L  ++   D      L ++  
Sbjct: 151 FTCWRHSIPQARKYLPAARDYFAASLWRRLGLRITETVMLDIRDWRPDLGGFGKLHVRYG 210

Query: 192 ----GKGDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
               G+G K R+VP +    + I  +         +   +   PL    R         +
Sbjct: 211 KGAHGRGPKPRLVPAINGAAELIDWWLGDVRHRYGEDWADPDAPLLPSERFDRELGRCGR 270

Query: 245 RYIRQLRRYLGLPL---------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                LRR LGL +           T H LRH  A+ L   G D++++Q +LGH  LSTT
Sbjct: 271 VGGNALRRSLGLQVDQWLPAWSGRMTPHVLRHYCASSLYGAGMDIKALQELLGHQWLSTT 330

Query: 296 QIYTNVNSKNGGDWMMEIYDQ 316
             Y +V S++         ++
Sbjct: 331 SGYIHVRSEHVEQAWKNANER 351


>gi|253569681|ref|ZP_04847090.1| transposase [Bacteroides sp. 1_1_6]
 gi|251840062|gb|EES68144.1| transposase [Bacteroides sp. 1_1_6]
          Length = 308

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/295 (16%), Positives = 109/295 (36%), Gaps = 32/295 (10%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
           +     +++ L  +   K       +L   +++ F+ ++    +  +S+K  L  +K  +
Sbjct: 23  QSTLAAYMLILENHILPKFGESN--ELHENDVQGFVLEKLEGGLSMKSVKDILIVLKMVM 80

Query: 100 KYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
           K+  K +        +++         L   L+      +++ +  H S           
Sbjct: 81  KFGVKNEWMNYYEW-DIKYPTDVAGKKL-EVLSVANHKKILNYIQSHFSFPGLG------ 132

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL------ 211
             +Y+    GLRI E  +L   +I      L +    ++I I+       + ++      
Sbjct: 133 --IYISLSTGLRIGEICALKWSDINVYDGILTVNRTIERIYIIEGERKHTELVINTPKTK 190

Query: 212 ----------EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
                     E   +      +            +P  P  ++ Y ++L   L +P    
Sbjct: 191 NSCREIPINKELLTMLKPLKKVINDDYYILTNDERPTEPRTYRNYYKRLMEKLDIPK-LK 249

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYD 315
            H LRHSFAT  +  G D +++  +LGH  +STT  +Y + N +     + +++ 
Sbjct: 250 YHGLRHSFATRCIEVGCDYKTVSVLLGHSNISTTLDLYVHPNMEQKKRCISKVFK 304


>gi|237715509|ref|ZP_04545990.1| tyrosine type site-specific recombinase [Bacteroides sp. D1]
 gi|229444218|gb|EEO50009.1| tyrosine type site-specific recombinase [Bacteroides sp. D1]
          Length = 301

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/319 (15%), Positives = 119/319 (37%), Gaps = 32/319 (10%)

Query: 13  ELLKER-QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           EL +E+ +++ + +  E+  S  T      D +  L+FL    ++ +    + +L    I
Sbjct: 2   ELFREQLESYKEKVGKEKAKS--TYLGLVADYKSALLFLK--DKKNVEDIALDELDKDFI 57

Query: 72  RAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
             + +    T      +    ++ +K  +   +++ +            K        L+
Sbjct: 58  EDYYNWMLGTCGSASSTAFGRVNTMKWLMHIAQEKGLIKVHPFTGF-GCKPGYKRRSFLS 116

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ--NIMDDQSTL 188
           E++   L+   L +   +          +L  +   GL  ++  ++T +  +   D  T 
Sbjct: 117 EEELQRLIHVELRYKRQQAM------RDMLLFMCFTGLAFADLKAITYKNIHTDSDGGTW 170

Query: 189 RI--QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            +  + K     +V LLP   + + +Y        + +   P+         +    +  
Sbjct: 171 LMGNRIKTGVAYVVKLLPIAIELVEKYKGDNKKKDSPDCVFPVG--------DYETMKSS 222

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV----- 301
            + L +     ++ T H  RH+FA   +  G  L ++Q +LGH  + +TQ+Y  +     
Sbjct: 223 FKVLGKKCDCNVNITPHIGRHTFAVLAILKGMPLETLQKVLGHKSILSTQVYAELINPKV 282

Query: 302 --NSKNGGDWMMEIYDQTH 318
             ++    D +  +Y   +
Sbjct: 283 GEDTDRMCDKIGSVYRLAN 301


>gi|189461279|ref|ZP_03010064.1| hypothetical protein BACCOP_01929 [Bacteroides coprocola DSM 17136]
 gi|189461291|ref|ZP_03010076.1| hypothetical protein BACCOP_01941 [Bacteroides coprocola DSM 17136]
 gi|189431991|gb|EDV00976.1| hypothetical protein BACCOP_01941 [Bacteroides coprocola DSM 17136]
 gi|189432021|gb|EDV01006.1| hypothetical protein BACCOP_01929 [Bacteroides coprocola DSM 17136]
          Length = 337

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 61/317 (19%), Positives = 117/317 (36%), Gaps = 49/317 (15%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L      +GL+      ++   + F  F+           T  ++     R F+    
Sbjct: 60  DFLAYF---KGLADRKNIKWQHVYKHFERFVNGKC-------TFEEVDVDLCRKFMEYLL 109

Query: 80  --------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
                   +QK+   S     S  ++ L    + +   E+    +  ++   ++   L++
Sbjct: 110 NAPQSIHTSQKLHINSAAGYWSAFRAVLHTAYRDRKIKENPNGFLDRIECIPTMREHLSQ 169

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTLRI 190
           ++ + L          ET   +             GLR S+   LT Q I       + +
Sbjct: 170 EELIRL---------AETPCEEEVLKRAFLFGCLTGLRKSDIRQLTWQQIQPYTNGKMFV 220

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
             +  K + +   P   +A           L    +  +F G + K L     Q  +++ 
Sbjct: 221 TTRMQKTKQIVHNPISDEA--------YGLLGERHEGLIFDGFKDKML-----QGPLKRW 267

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+    T H  RHSF +  +  G D+  IQ+ LGH  ++TTQIY+ + ++     M
Sbjct: 268 LLAAGITKKITFHCTRHSFGSLHVEMGTDMAVIQAYLGHKNITTTQIYSKMAAQQ----M 323

Query: 311 MEIYDQTHPSITQKDKK 327
            E+ D+    IT K K+
Sbjct: 324 CEVVDK----ITLKRKE 336


>gi|293370097|ref|ZP_06616662.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292634825|gb|EFF53349.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 321

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/299 (19%), Positives = 102/299 (34%), Gaps = 37/299 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + ++  L  E   S  T   Y+     F  F            + RQ++   +R +    
Sbjct: 12  EFYIGRLRKEGRYS--TAHVYKNALFSFSKFCGTLN------VSFRQVTRESLRRYGQYL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-----NLKKSNSLPRALNEKQ 133
               +   ++   +  ++S      +  I      L        ++++  +LP       
Sbjct: 64  YECGLKPNTISTYMRMLRSIYNRGVEAGIAPYVPRLFHDVYTGVDVRQKKALPAV----- 118

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLY-GCGLRISEALSLTPQNIMDDQSTLRIQG 192
                +   L           R  AI  L++  CG+  ++   L       +Q+ LR   
Sbjct: 119 -----ELHKLLYEDPKSERLRRTQAIAALMFQFCGMSFADLAHLEKSA--LEQNVLRYNR 171

Query: 193 -KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY----- 246
            K      V +L + R+ I +  +      +    L        K L+   ++ Y     
Sbjct: 172 IKTKTPMSVEVLDTAREMINQLRNREDAQPDCPDYLFDILSGDQKRLDERGYREYQSALR 231

Query: 247 -----IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                ++ L R L L    T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 232 QFNNCLKDLARALHLQSPVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLK 290


>gi|258539026|ref|YP_003173525.1| phage-related integrase [Lactobacillus rhamnosus Lc 705]
 gi|257150702|emb|CAR89674.1| Phage-related integrase [Lactobacillus rhamnosus Lc 705]
          Length = 375

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/320 (17%), Positives = 123/320 (38%), Gaps = 35/320 (10%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L+     W++  +  +  S++T   Y+   +Q L +     E       ++ +S ++ +A
Sbjct: 62  LIDYWDKWIELYKSGKH-SRITEARYKTIRKQLLAYWGESRE-------LKSISKSDWQA 113

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNE 131
           FI++   +K    ++ +    ++S        ++   +   N+     +    + + L  
Sbjct: 114 FINEF-GKKRAKDTVSKLNGYVRSMADSAVDDQVIYTNFTHNVVLTGNEGQAGIIKYLQV 172

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
                LV+  L    +E          I+      G R SE L LT  ++   +  + I 
Sbjct: 173 NDLRKLVNYCLEFADYE-----HIAYYIIATGALTGARYSEVLGLTWDHVDLKKRVVHIT 227

Query: 192 GKGDK--------------IRIVPLLPSVRKAIL----EYYDLCPFDLNLNIQLPLFRGI 233
              D               +R + +   +   +L    E  ++       + +  LFR I
Sbjct: 228 RTWDHRYGSGFAATKNKSSVRDIDITRELADLLLRLKKEQQEIYLAQGYRDSKQLLFRSI 287

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   L+     + +R +++ L +  + T H LRH+  ++L++N  D+  I   LGH    
Sbjct: 288 RHNMLSSTAINKDLRTIQKTLDISPAITFHGLRHTHVSYLIANHVDINYISKRLGHANTM 347

Query: 294 TTQ-IYTNVNSKNGGDWMME 312
            TQ +Y ++      + + +
Sbjct: 348 ITQKVYAHLLEDQRKEQVSQ 367


>gi|119898154|ref|YP_933367.1| phage integrase family site specific recombinase [Azoarcus sp.
           BH72]
 gi|119670567|emb|CAL94480.1| site-specific recombinase, phage integrase family [Azoarcus sp.
           BH72]
          Length = 358

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 99/265 (37%), Gaps = 23/265 (8%)

Query: 53  YTEEKITIQTIRQLSYTEI---RAFISKRRTQK--IGDRSLKRSLSGIKSFLKYLKKR-K 106
           Y  +      +  +S   I   R  ++KR T++  +   ++ R ++ + +   +  K  +
Sbjct: 89  YWRQAFGSSALADVSPALIAEHRDRLTKRTTERGTVSLATVNRYIATLSALFTFAVKELQ 148

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
               + +  +R   +S    R L++++   L+           +  +      + L    
Sbjct: 149 WVEANPVERVRKFGESPGRVRYLSDQERAALLTAC-------RESRNPYLYPAVVLALST 201

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
           G R +E  +L  Q +   + T+ ++    K    R++PL       + +   +   D+  
Sbjct: 202 GARQAEITTLRWQQVDFARRTIVLREGETKNGAGRVLPLTGEALDLLRDLAKVR--DIRD 259

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
           +   P+    R         +       +  G+      H LRH+ A++L   G     +
Sbjct: 260 DRVFPVASTTRAF----NSIKGAWDGAVKRAGIS-DFRWHDLRHTAASYLTMAGIGSMEV 314

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGD 308
             +LGH  L  T  Y++++ +   +
Sbjct: 315 AKVLGHKTLQMTARYSHLSPERTVE 339


>gi|157372468|ref|YP_001480457.1| integrase family protein [Serratia proteamaculans 568]
 gi|157324232|gb|ABV43329.1| integrase family protein [Serratia proteamaculans 568]
          Length = 153

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 58/141 (41%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           ++ + +  GLR SE   LT  NI  D   + I    + + +   L      +L ++    
Sbjct: 1   MISMCFIHGLRASELGGLTLDNIELDAKRIYIPRLKNGLSVQHPLHDNEIIMLNHWLEIR 60

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
                  Q  LF   +G P+      R IR   +   + + T  H LRH+    L + G 
Sbjct: 61  KSWRYADQPWLFLSRKGGPITRQQIYRLIRDYGKNANIQVPTHPHMLRHACGYFLANLGM 120

Query: 279 DLRSIQSILGHFRLSTTQIYT 299
           D R IQ  LGH  +  T +YT
Sbjct: 121 DTRLIQDYLGHRNIHHTVLYT 141


>gi|319949774|ref|ZP_08023799.1| phage-related integrase [Dietzia cinnamea P4]
 gi|319436574|gb|EFV91669.1| phage-related integrase [Dietzia cinnamea P4]
          Length = 317

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/305 (15%), Positives = 106/305 (34%), Gaps = 26/305 (8%)

Query: 1   MEGNNL-PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
           M G+ + PE     + +  + WL+  ++ R     T++      ++ +            
Sbjct: 1   MRGDYIRPEDAQLTVEQWCEQWLEAYKVHR---PSTVRQARTHVKRIVA--------AFG 49

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
            Q +  +  T +R++I+  + + +   ++    S +   +       I   S      + 
Sbjct: 50  DQRLSDVRPTMVRSWIASMQGEGLAASTIYALHSRLAHIMADAVHDGILQRSPCSRRTSP 109

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
               +       +Q   L D +  H               + L    GLR+ E   L   
Sbjct: 110 PMGKTKVYVATTEQIWALHDEMPEHL-----------RPAILLGAFAGLRLGEVCGLRVD 158

Query: 180 NIMDDQSTLRIQGK-GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
           ++   + ++  + + G                 +   L    +       +     G P 
Sbjct: 159 DVDFMRGSVTPRFQAGGAPLKTSGSEMTVPVPRDLALLLSESVATWGTDYVVTNGLGGPA 218

Query: 239 NPGVFQRYIRQLRRYL-GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
                +R +R+ R  + GLP   T H  RH +A+ L++ G D+++IQ+ + H     T  
Sbjct: 219 RDFQVERAVREARGRVPGLPERFTHHDCRHHYASILIAGGADIKTIQARMRHQSARVTLD 278

Query: 297 IYTNV 301
           +Y ++
Sbjct: 279 VYGHL 283


>gi|304382548|ref|ZP_07365043.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
 gi|304336379|gb|EFM02620.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
          Length = 422

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 59/319 (18%), Positives = 126/319 (39%), Gaps = 40/319 (12%)

Query: 14  LLKERQNWLQNLEIERG------LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR--Q 65
           LL+E Q +++    E+       ++K T  +Y   T+     +  Y  E++ ++ IR   
Sbjct: 110 LLEEAQLFIE----EKRPCVGITVAKPTFANYIYATQ----LIEAYLRERLGLEDIRYSS 161

Query: 66  LSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L Y  I       ++++ +   +++ ++  ++  +   +++K        + +  +  + 
Sbjct: 162 LDYGFIEGMDFYLKSERNLSLATIQVAVIFLRKLIGIGQQKKYIRIDPFADYKA-ELPHR 220

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-- 182
             R L  ++   ++   ++    E          +       GL   +   L P++I+  
Sbjct: 221 TRRYLTTEELQRVLQTPIIDRQFERA------RQLFLFCSFTGLARVDMQRLKPKHIIHN 274

Query: 183 -DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
            D    +RI + K D   I+PLLP  ++ +  Y        +      +F       L  
Sbjct: 275 ADGTEEIRIKRQKTDVEAIIPLLPIAKQILSLYI------KDKKADELIFPN-----LTI 323

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYT 299
                    + +   +    T H  RH+F+T   LSNG  + ++  +LGH  + TTQIY 
Sbjct: 324 RKASFACVNIGQICRIDKGLTFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYG 383

Query: 300 NVNSKNGGDWMMEIYDQTH 318
            +      + M  + D+ H
Sbjct: 384 KITDHKIQEDMTALTDREH 402


>gi|257459280|ref|ZP_05624394.1| putative phage integrase [Campylobacter gracilis RM3268]
 gi|257443293|gb|EEV18422.1| putative phage integrase [Campylobacter gracilis RM3268]
          Length = 290

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/297 (17%), Positives = 101/297 (34%), Gaps = 45/297 (15%)

Query: 35  TLQSYECDTRQFLIFLAF---------YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           TL S   D  + L  + F         ++  K   +    +   +I+ +++    + +  
Sbjct: 2   TLASIARDYLEALGQINFEQSRAQKFAFSHTKYLPKDAACIKKVDIQRWLAGL-EEGLAP 60

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            ++KR +   +   +   +     ++  L  +  K   S     + ++     D +L   
Sbjct: 61  STIKRVVLCWRRACEQAVEAGKLAKNPFLRAKYPKIPRSKTDPFSVEEV----DLMLSKA 116

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-----------QGKG 194
           S   +         L   +  G R  E L+L   +I  +  ++ I           + K 
Sbjct: 117 SGRLES-------FLAFAFYTGARCCEILALCWDDIDTEAMSISISKSLTDGLVKPRTKT 169

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            + RIVP+   +   I +       +      Q  LF                 R+    
Sbjct: 170 GEDRIVPIFAPLLPYIAQLEKHRDSEWVFSRKQDHLFGSTALFG------NGRWRKFLAE 223

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGG----DLRSIQSILGHFRLSTT-QIYTNVNSKN 305
            G+P  +  HT RH+FATH++         L+ +  ILGH  L  T ++Y       
Sbjct: 224 CGIPYRSARHT-RHTFATHMVERAVKGEIPLKWVSQILGHASLDMTIKVYARFLQNE 279


>gi|239630751|ref|ZP_04673782.1| site-specific recombinase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239527034|gb|EEQ66035.1| site-specific recombinase [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 385

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 109/302 (36%), Gaps = 36/302 (11%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
            T++  E    +       +       + I  ++  +++   + +R  +    + KR  +
Sbjct: 84  NTVR--ESTWARTAGMFNNHILPAFGGKRIATITTKDVQK--AVKRWFEFTSANYKRWYN 139

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSN---SLPRALNEKQALTLVDNVLLHTSHETK 150
            + S + Y  ++    ++    +      +     P     K+ +      +   +H   
Sbjct: 140 YVSSVMDYAVRQGYMDKNPAKAVVLPHHDDLAGDKPENFWTKEQMNRFFACIDQANHFDI 199

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------------G 194
           +I      +  +L   G+R  E L+LT  ++   ++++++                    
Sbjct: 200 FI------MFRVLAFTGVRRGELLALTWNDVSFKENSIKVNKTLTQGDKGHQIVQAPKTR 253

Query: 195 DKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIR 248
              R +P+       +  +          L +N   P   LF   +    +     + + 
Sbjct: 254 AGRRTIPVDGQTMAYLKRWRRIQQETFLQLGINTMQPNQLLFTNTKNGYQSLNTPSKRLH 313

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGG 307
           +L+   GL    T H  RHSF ++LL  G  + S+Q ++GH   + T  +Y +V++K   
Sbjct: 314 KLQDDNGLTPRITIHGFRHSFISNLLIAGVPVTSVQKLVGHTDPTITLGVYAHVSAKQES 373

Query: 308 DW 309
           + 
Sbjct: 374 EA 375


>gi|224024425|ref|ZP_03642791.1| hypothetical protein BACCOPRO_01149 [Bacteroides coprophilus DSM
           18228]
 gi|224017647|gb|EEF75659.1| hypothetical protein BACCOPRO_01149 [Bacteroides coprophilus DSM
           18228]
          Length = 412

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/295 (17%), Positives = 111/295 (37%), Gaps = 24/295 (8%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRS 87
           +  ++ T+  +E    +   F+ F   +      + +L    +R F    +T     + S
Sbjct: 131 KEYTESTVTKFETSINRLREFIRFGYHKD--DLFLNELDGQFVRDFEYWLKTSIGCQNNS 188

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             + L  +K  ++         +     +   K        L++++   L++        
Sbjct: 189 ALKHLKNLKKVIRIALANGWIEKDPFYGIH-FKMDEVNVEFLSQEELDRLME-----KDF 242

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQG---KGDKIRIVPLL 203
           E K ++       +  Y  GL  ++   L+ ++++ D    L I+    K  ++  +P++
Sbjct: 243 EIKRLEQVRDVFAFCCY-TGLAFADVHQLSKEHLVRDNDGNLWIRKARQKTKQMCNIPVI 301

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              RK I +Y       +  N+ LP+        L+      Y++++    G+    T H
Sbjct: 302 SPARKLIDKYSHQPDC-IAKNVLLPV--------LSNQKMNAYLKEIADICGIQKRLTTH 352

Query: 264 TLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
             RH+ AT   L+N   + ++  ILGH  +  TQ Y  V   +    M  +    
Sbjct: 353 VARHTAATVVFLANEVSMENVAKILGHSNIRMTQHYAKVLDTSILRDMKNVERSF 407


>gi|91763255|ref|ZP_01265219.1| Integrase/recombinase xerD-like protein [Candidatus Pelagibacter
           ubique HTCC1002]
 gi|91717668|gb|EAS84319.1| Integrase/recombinase xerD-like protein [Candidatus Pelagibacter
           ubique HTCC1002]
          Length = 318

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/320 (18%), Positives = 125/320 (39%), Gaps = 29/320 (9%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ++   ++  L NL+  +  +  T+++Y+ D   F +F A    + +  +         + 
Sbjct: 7   DIKALQEETLLNLQSSK--ANNTVRAYKSDFNDFGLFCAKNGFKSLPSE------PKIVS 58

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLK----YLKKRKITTESNILNMRNLKKS-NSLPR 127
            +++   T+ +   +LKR L  I    K    YL  +  +   NI+ ++  K S     +
Sbjct: 59  LYLTHLSTKDVRMSTLKRRLVSIGVIHKLKGHYLDTKHPSIVENIMGIKRRKGSIQRGKK 118

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L       +++ +      E K +  R+ +I+ + +  G R +E +SL  +++   Q  
Sbjct: 119 PLLINNLKKIINVIDQQKKEEIKKL--RDRSIILIGFSGGFRRNEIVSLDYEDLDFVQEG 176

Query: 188 LRI---QGKGDKIRIVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFR------GIR 234
           L+I   + K D+     +         +Y          +++      LFR       I 
Sbjct: 177 LKINLRRSKTDQFGEGFVKGLPYFQNPQYCPVISIHKWIEISKIKSGALFRRFIKGSKIS 236

Query: 235 GKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
              L        +++  +  G+   + + H+LR  FAT    +G + RSI ++ GH    
Sbjct: 237 DNRLTDQTVALIVKEYLKLAGIDCKNYSGHSLRSGFATSAAESGAEERSIMAMTGHKSTE 296

Query: 294 TTQIYTNVNSKNGGDWMMEI 313
             + Y    +    + +  I
Sbjct: 297 MVRRYIKEANLFKNNALKNI 316


>gi|91215321|ref|ZP_01252293.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755]
 gi|91186926|gb|EAS73297.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755]
          Length = 124

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/117 (35%), Positives = 58/117 (49%), Gaps = 7/117 (5%)

Query: 188 LRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
           +RI+  KG+K R+  L  +    +  YY           +  LF G RG   +       
Sbjct: 3   VRIKKAKGNKDRLTLLSQNALLDLRCYY------KKWKPKEYLFEGQRGGKYSGQAVVNV 56

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +++      + +  T H LRHSFATHLL  G DLR IQ +LGH    TT+IYT+V +
Sbjct: 57  VKKAAFKAKIRIPVTPHMLRHSFATHLLEAGVDLRQIQVLLGHQSTKTTEIYTHVAT 113


>gi|325289641|ref|YP_004265822.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324965042|gb|ADY55821.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 378

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 67/337 (19%), Positives = 127/337 (37%), Gaps = 40/337 (11%)

Query: 5   NLPEIVS---FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           +LPE        L    + WL +   ER +   T  SY      ++I      E      
Sbjct: 51  SLPETSPNSRHPLSCLLKKWLNDDVRER-VKPTTYDSYYYCMATYVIPFFDSLEIGGG-- 107

Query: 62  TIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
               +S   I+ FIS   R Q + +   ++ LS  K+ LK + K      S +      K
Sbjct: 108 ---AISEGHIKYFISYISRNQHLSETYKRKVLSIFKTALKKIFKNAENYRSIMEAFHLPK 164

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
            S S+P A+   +   L++  ++  +             + L +  G+R+ E  +L+ ++
Sbjct: 165 -SKSVPVAVFSMKEQRLIEAEIMRDNDIRSVG-------ILLCFYTGIRLGELCALSWKD 216

Query: 181 IMDDQSTL-------RIQGKGDKIRIVPLLPSVRKAILEYYD----------LCPFDLNL 223
           +  D  TL       RI+ K  +     L  +  K+                +   + + 
Sbjct: 217 VDLDAKTLLINGTVSRIKKKNTQHGKTQLSITTPKSRSSMRKIPIPNFLIQKMRSLESSQ 276

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
           + +       +  P +P  +QR  ++L     +      H +RH+FAT  L    D++++
Sbjct: 277 SKEDSYIFSNKKGPTDPRTYQRVYKRLLDKAKITPR-KFHAIRHTFATRALEMSVDIKTL 335

Query: 284 QSILGHFRLSTT-QIYTNVNSKN---GGDWMMEIYDQ 316
             +LGH  ++ T   Y +   +      D M   Y++
Sbjct: 336 SELLGHSSVTVTLNTYAHSLMEQKIIAIDKMNSFYEK 372


>gi|20092590|ref|NP_618665.1| integrase [Methanosarcina acetivorans C2A]
 gi|19917867|gb|AAM07145.1| integrase [Methanosarcina acetivorans C2A]
          Length = 390

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 108/267 (40%), Gaps = 33/267 (12%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           +  +++   ++  I+     ++   + +     I+ F K+LK      +S    ++  KK
Sbjct: 66  SFSKMNEHHVQKIIADFERSELAASTKRDYKVIIRRFFKWLKG----DKSPAAWIKVSKK 121

Query: 122 --SNSLPRA-LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
                LP   + E +   +++             +AR+ AI+ LLY  G RI E   +  
Sbjct: 122 VSDQKLPEYMITEDEVKRMIEA----------ASNARDKAIIALLYDSGCRIGELGGVKI 171

Query: 179 QNIMDDQ--STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG---- 232
           +NI  DQ  + + + GK    R+   +      +  + D+ P+      +  +F      
Sbjct: 172 KNITFDQYGAVVVVSGKTGARRVR--VTFAASYLAAWLDVHPY--KEKSEAFVFINLEGV 227

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ--SILGHF 290
            +G+ +    FQ  ++++ +  G+      H  RHS +T L      L   Q    LG  
Sbjct: 228 KKGEQMQYQAFQYTLKKIAKAAGIEKRIHLHLFRHSRSTELAQY---LTEAQMEEHLGWA 284

Query: 291 RLSTT-QIYTNVNSKNGGDWMMEIYDQ 316
           + S   + Y +++ K   D ++ IY +
Sbjct: 285 QGSEMPRTYVHLSGKQIDDAILGIYGK 311


>gi|331018392|gb|EGH98448.1| hypothetical protein PLA106_20343 [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 485

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/337 (14%), Positives = 116/337 (34%), Gaps = 52/337 (15%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M    LPE+    +L               L   T++ Y   T+ ++ F       + T 
Sbjct: 1   MNTMTLPELTQEYILTH------------DLRPDTVKIYWAATKSYVRFFGNRLASETTH 48

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           + +     +E+         +++  RS     S +++  +Y  +  +      L +  LK
Sbjct: 49  RDMLDWRRSEL---------ERVSKRSWNTYSSHLRTVYRYAMEHGLVE----LKVNPLK 95

Query: 121 KSNSLP-----RALNEKQALT-------LVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
           ++  +P     + +N    +        LV       +           A+  + Y  G+
Sbjct: 96  ETRVIPTKRPKKTINTDAIVRARNWLNILVQEERATGNRTEITPAWFWLAVFEMFYYTGI 155

Query: 169 RISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           R++  + L   +I   Q  +R++G   K  +  ++P+   +   +    ++         
Sbjct: 156 RLNALICLRYADIDLGQRLIRVRGETEKTHREFMIPIPDGLMPHLKLLMEIAHKVGFAPT 215

Query: 226 QLPLFRGIRGKPLNPG-----VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGD 279
                        +         +   ++L    G+    T H  RH+ A+ ++     +
Sbjct: 216 DQIFNVNRFSGHYSRSQMNSDQVEAMYKKLTAMTGV--RMTPHRFRHTIASEMMRQPERN 273

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +   +++L H  ++TT  Y     +   D M E+ ++
Sbjct: 274 IHITKNLLNHSNIATTMEYI----EPDYDVMREVMNE 306


>gi|317476899|ref|ZP_07936142.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316907074|gb|EFV28785.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 368

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/307 (18%), Positives = 112/307 (36%), Gaps = 49/307 (15%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDT--RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           ++L     E+      L+ ++ D   + F  F+  Y        T   ++    + F   
Sbjct: 95  DFLAYFR-EKAK----LKYHKWDCVYQHFEKFVNGYC-------TFGDVTVELCQKFRQY 142

Query: 78  RRTQK--------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
               K        +   S     S  ++ LK   + K+  E+    +  ++      + L
Sbjct: 143 LLNCKQIRHPNISVSRNSAAGYFSTFRALLKIAYQEKMLRENLNDFIDKIEWKEVKKQYL 202

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQS 186
              +   L        +   K    + +++   +   GLRIS+ L LT  NI    D+  
Sbjct: 203 TLAEVKKL-------AATPCKIPVLKQASLFSCM--TGLRISDILQLTWDNIEVGPDNGY 253

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            +RI  +  +           +A L   +       +     +F+G     L   +  + 
Sbjct: 254 YIRICTEKTET----------EATLPISNEALELCGIPDSGRVFKG-----LTRAMTNQP 298

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           ++Q     G+    T H  RHS+A   +S G D+ ++  +L H  +STTQIY ++ +   
Sbjct: 299 LKQWISEAGIKKHITFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKK 358

Query: 307 GDWMMEI 313
            +   +I
Sbjct: 359 RETANKI 365


>gi|124265741|ref|YP_001019745.1| hypothetical protein Mpe_A0548 [Methylibium petroleiphilum PM1]
 gi|124258516|gb|ABM93510.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
          Length = 334

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 100/243 (41%), Gaps = 21/243 (8%)

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES---NILNMRNLKKSNSLPRALNE 131
           + K + + +   +L R  + + + L + ++R+I  ++      ++    + N + R L++
Sbjct: 104 VMKAKRRPLAPATLNRYQAALSAVLTWAQRRRIAPKNWQNPCRHVELKAEKNEIVRFLSD 163

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            +   L+           K    R   ++ +    G R  E  +L   ++  +++   + 
Sbjct: 164 AERTALLAAC-------RKSSWPRLYLLVMMGLTTGARRGELEALRWADVDLERAEAAVH 216

Query: 192 G-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
             K    +++PL+P+V   + ++               +F   R   +    F     + 
Sbjct: 217 RSKNGDKKVLPLVPAVVDELAKHAGAANAL--------VFPSTRRPDIAYN-FDPAWDRA 267

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  G+  S   H LRHS A+ L  NG  L  I  +LGH +LS T+ Y+++ + +    +
Sbjct: 268 LKAAGV-KSFRFHDLRHSCASALAQNGATLLEIAEVLGHRQLSVTKRYSHLATDHKTKLI 326

Query: 311 MEI 313
             +
Sbjct: 327 NRV 329


>gi|331086494|ref|ZP_08335573.1| hypothetical protein HMPREF0987_01876 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410552|gb|EGG89980.1| hypothetical protein HMPREF0987_01876 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 409

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 59/325 (18%), Positives = 112/325 (34%), Gaps = 65/325 (20%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSL 88
           GL + T  +Y      F++            + I+++  +++R + +     +K+   +L
Sbjct: 84  GLKQTTRNNYIYMYEHFVM-------NDFGNRKIKEIRKSDVRRYYNGIVDSKKMSVATL 136

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNM-------RNLKKSNSLPRALNEKQALTLVDNV 141
           +   + +        +      +    +        N +       AL   Q    V + 
Sbjct: 137 ESIHTVLHQVFILAVEDGYIRINPSDLVLGDVKRSHNFETPKR--HALTIPQQEAFV-SY 193

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI---- 197
           +  +     W+      +     G G R+SE + L  +++  D++ + I           
Sbjct: 194 INKSEKYKHWLP-----LFTFFLGTGCRVSEVVGLRWEDVHMDENYIEINHNMVYYQRDK 248

Query: 198 ----------------RIVPLLPSVRKAIL------EYYDLCPFDLNLNIQLPLFRGIRG 235
                           RI+P+LP V++AIL      E   L            +F    G
Sbjct: 249 GKCYFSVTSPKTTAGYRIIPMLPEVKQAILNEKKYQEEVGLTCQASIDGYTDFIFLNRNG 308

Query: 236 KPLNPGVFQRYIRQLRRYLG---------------LPLSTTAHTLRHSFATHLLSNGGDL 280
              NP    R I+++                    L  + + H LRH+FAT    N  +L
Sbjct: 309 FAHNPQTINRTIKRITLAYNEEEIERAERERRAPVLLPNFSCHNLRHTFATRYCENETNL 368

Query: 281 RSIQSILGHFRLSTTQ-IYTNVNSK 304
           + IQ I+GH  ++TT  IY     +
Sbjct: 369 KVIQEIMGHKDIATTMEIYAEATKE 393


>gi|324997183|ref|ZP_08118295.1| phage integrase family protein [Pseudonocardia sp. P1]
          Length = 378

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 96/269 (35%), Gaps = 47/269 (17%)

Query: 62  TIRQLSYTEIRAFISKR--------RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI 113
            +++L  + I  +I +         R   +   +++  ++ +++ L+   K ++      
Sbjct: 95  PLQRLLRSHIELWIKEMQTADRGPDRAAGLAPGTIRTRVNNVRAVLRGAVKDRVLATDPS 154

Query: 114 LNMRNLKKSNS-----LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
             ++  +   +     LP          L++             D R    + L    GL
Sbjct: 155 EGVKLPRARRTDVAMELP---TSDDVRVLLEM-----------ADRRFVCFIALCAFAGL 200

Query: 169 RISEALSLTPQNIMDDQSTLRIQG---------------KGDKIRIVPLLPSVRKAILEY 213
           R+ EA ++   +       L ++                K    R V L   +   +  +
Sbjct: 201 RLGEAAAVQVGDFDLAARRLVVRRQVQRANNQAVEIRAPKYGSERTVHLADGLVDIVRVH 260

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                       +  LFRG  G P +      + R+ RR  G P +   H LRH FA+ L
Sbjct: 261 LA---GLSGRGSERWLFRGENGNPPHQNTVGYWWRKTRRDAGHP-TIRLHDLRHFFASGL 316

Query: 274 LSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           ++ G D+ ++Q  LGH   + T   Y ++
Sbjct: 317 IAAGCDVVTVQRALGHSSATVTLSTYAHL 345


>gi|29028668|ref|NP_803356.1| integrase [Staphylococcus phage phi13]
 gi|88195912|ref|YP_500723.1| integrase [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|156604018|ref|YP_001429963.1| integrase [Staphylococcus phage tp310-3]
 gi|258444472|ref|ZP_05692805.1| integrase [Staphylococcus aureus A8115]
 gi|18920592|gb|AAL82331.1| integrase [Staphylococcus phage phi13]
 gi|87203470|gb|ABD31280.1| integrase [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|154818104|gb|ABS87530.1| integrase [Staphylococcus phage tp310-3]
 gi|257850363|gb|EEV74312.1| integrase [Staphylococcus aureus A8115]
 gi|329724941|gb|EGG61443.1| site-specific recombinase, phage integrase family [Staphylococcus
           aureus subsp. aureus 21189]
          Length = 345

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 112/278 (40%), Gaps = 18/278 (6%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           + T + Y    +          + KI    + +++    + FI+    +   + +++++ 
Sbjct: 74  ENTYRHYRNALQH-------IQKHKIGKMELSKINRQVYQKFINDYSKEHAKE-TIRKTN 125

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             I+S L       +  ++    + N K         +E++    V    +   H  K  
Sbjct: 126 GAIRSALDDALYDGLIFKNPAYKV-NYKAGKP---TKSEQEKFISVTEYEILKDHVRKKR 181

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
              + A+  ++   G R+S A ++  ++I   ++T+ I  +        +  S+ K+ ++
Sbjct: 182 TRSSLALF-IMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYI--SIAKSDMK 238

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +         ++    +F+      +N       ++   R   +P+  T+H LRH+  ++
Sbjct: 239 HIMDVISTFAISYDGYIFKEAGSI-INLQAINNALKSACRVNNIPI-ITSHALRHTHCSY 296

Query: 273 LLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDW 309
           LL+ G  +  I   LGH  ++ TT +Y+++  +   + 
Sbjct: 297 LLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEE 334


>gi|317057341|ref|YP_004105808.1| integrase family protein [Ruminococcus albus 7]
 gi|315449610|gb|ADU23174.1| integrase family protein [Ruminococcus albus 7]
          Length = 372

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/315 (16%), Positives = 108/315 (34%), Gaps = 47/315 (14%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS--------KRRTQKIGDRSLK 89
           ++   T Q    +A      +    I +++  +I+ FI+        KR  + +  ++++
Sbjct: 59  NHRSTTLQREHLIADRVIPALGHLRIDKITARDIQKFINSLAKPGANKRNGKPLSQKTMR 118

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKS------NSLPRALNEKQALTLVDNVLL 143
             LS I S  +Y  +  +   +    +   K            + +  K+       +L 
Sbjct: 119 HHLSFISSIFEYAIRLDMVNTNPCSKVMIPKIDASGKAYKKPEKHIYTKEQAREFMKILR 178

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI------ 197
                      +      L    G R  E L +  +NI  ++ T++I    +        
Sbjct: 179 EAP-------MKYKVFFTLAIYTGCRRGELLGIEWKNIDFERGTVKIDHTSNYTADKGIY 231

Query: 198 ----------RIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGV 242
                     R+V L P+V   +  Y                    LF    G+P++P  
Sbjct: 232 SDATKTERSTRMVDLPPAVIGLLKAYKHDQDSYKANLGDEWQEHDRLFTKWDGQPMHPNT 291

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNV 301
              ++ +       P     H+ RH FA+  +  G D  ++ ++LGH    TT   Y++ 
Sbjct: 292 PYTWLMRECERRNFPFY-GLHSFRHFFASVEIEAGVDPTTVAAMLGHSTPVTTMSTYSHY 350

Query: 302 ---NSKNGGDWMMEI 313
              + +   + M E+
Sbjct: 351 FAESKRRASNIMAEV 365


>gi|260664108|ref|ZP_05864961.1| Lj965 prophage integrase [Lactobacillus jensenii SJ-7A-US]
 gi|260561994|gb|EEX27963.1| Lj965 prophage integrase [Lactobacillus jensenii SJ-7A-US]
          Length = 375

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/298 (19%), Positives = 112/298 (37%), Gaps = 41/298 (13%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           +  T  +Y    + F                + ++S  +++ +  K  T+ +        
Sbjct: 92  ANKTAINYRVHIKPFF-----------GNAYMDKISVRDVQLWADKLATKLVK---FNDP 137

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           +  ++SF +Y  +    + + + ++    K++  PR   E    +  +  L       K 
Sbjct: 138 IFILRSFYEYAIRMNYVSINPVGSIIMPIKTSR-PRRNVEDNVYSRKELELFF--QVAKE 194

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------------GD 195
            + R      LL   GLR SEAL+LT  +I      + +                     
Sbjct: 195 YNLRAYTYFKLLASTGLRKSEALALTWDDIDFINGVIDVNKTLAVGLDNKVQVQPPKSKS 254

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            IR VP+  ++   + EY +         +   +F    GK L+     +++  +     
Sbjct: 255 SIRQVPISANLANVLNEYKNSEKI-----LSAKVFHTYTGKYLSLSKPMKWLEAIYNKAP 309

Query: 256 LP-LSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
                 T H  RH+FAT L+       +++Q +LGH  +  T  IYT++N+KN  + +
Sbjct: 310 KDLKHITVHGFRHTFATLLISETDVKPKTVQMLLGHSNIQMTLDIYTHINNKNKKEAV 367


>gi|116512825|ref|YP_811732.1| integrase [Lactococcus lactis subsp. cremoris SK11]
 gi|116108479|gb|ABJ73619.1| Integrase [Lactococcus lactis subsp. cremoris SK11]
          Length = 393

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/292 (18%), Positives = 118/292 (40%), Gaps = 28/292 (9%)

Query: 33  KLTLQSYECDTRQF-LIFLAFYTEEKITIQTIRQLSYTEIR----AFISKRRTQKIGDRS 87
             T++      + + L  L  Y  EKIT   ++ +     R    A I     +K   + 
Sbjct: 88  ANTIRINSNFLKNYILPALGNYKVEKITTVLLQNIVNDWARNANTAEIVNGNREKGKSKD 147

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLK---KSNSLPRALNEKQALTLVDNVLLH 144
            K  L+ IK  L Y  +  + +++  + + + K   ++    +  N  +    +D +   
Sbjct: 148 YKLLLNIIKRILDYGMQLGVISDNPAIKVFSPKLKTRTVKKIKYFNNDELKRFLDYLD-- 205

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------- 193
            S ++   + +++++  LL   GLRI EAL+L+  +I    +T+ +              
Sbjct: 206 -SLQSTTANIKSTSLYKLLLATGLRICEALALSWSDIDFVNNTVSVSKTLIQYSNEIQDS 264

Query: 194 ---GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
               +  R+V +       + E+     +         +F   +       + ++++ + 
Sbjct: 265 AKTKESNRLVSVDSETISMLKEWRKHQNYGAISLHDSLVFSYHQKMR-TYELERQHLVRH 323

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNV 301
            +   +P +   H  RH+ A+ L++N  + + IQ  LGH   S T  +Y+++
Sbjct: 324 FKKAKVP-NIGFHGFRHTHASLLMNNDVNPKEIQMRLGHADYSITMNLYSHL 374


>gi|331666613|ref|ZP_08367487.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli TA271]
 gi|330910118|gb|EGH38628.1| putative DNA recombinase [Escherichia coli AA86]
 gi|331065837|gb|EGI37721.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli TA271]
          Length = 156

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 55/140 (39%), Gaps = 1/140 (0%)

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPF 219
            + +  G R SE L L   +I      L I+  K       PLLP     I  +      
Sbjct: 1   MMAFIHGFRASELLDLRLSDIDASGKQLNIRRIKNGFSTTHPLLPDEYNLIKLWLKQRKL 60

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
             N      LF   + +P++   F   IR+  +  GL +    H LRH+    L  NG D
Sbjct: 61  IENGVEGDWLFLSRKRRPISRQHFFSIIREAGKRAGLAVKAHPHMLRHACGFALADNGVD 120

Query: 280 LRSIQSILGHFRLSTTQIYT 299
            R +Q  LGH  +  T  YT
Sbjct: 121 TRLLQDYLGHRNIQHTVRYT 140


>gi|218263823|ref|ZP_03477799.1| hypothetical protein PRABACTJOHN_03489 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222496|gb|EEC95146.1| hypothetical protein PRABACTJOHN_03489 [Parabacteroides johnsonii
           DSM 18315]
          Length = 333

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 97/274 (35%), Gaps = 34/274 (12%)

Query: 49  FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-----IGDRSLKRSLSGIKSFLKYLK 103
               +   K T   +      + R ++ K +        I   S     S  ++ LK   
Sbjct: 82  HFEKFVGGKCTFGDVTVELCEKFRDYLLKCKQINHPNAYISRNSAAGYYSTFRALLKIAY 141

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           K K+  E+    +  ++        L   +   L        +   K    + +++   +
Sbjct: 142 KEKMLRENLNDFLEKIEWKEVKKEYLTLDEVKKL-------AATPCKIPVLKQASLFACM 194

Query: 164 YGCGLRISEALSLTPQNIM---DDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPF 219
              GLRIS+ L L  ++     D    +RI   K +    +P+     +   E       
Sbjct: 195 --TGLRISDILKLDWRDFEVGPDQGYYIRICTEKTETEATLPISQEALELCGE------- 245

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
                    +F+G     L   +    ++Q     G+    T H  RHS+A   +S G D
Sbjct: 246 ----GGTGKVFKG-----LTRSMTHHPLKQWIAEAGIRKHITFHCFRHSYAVIQISLGTD 296

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           + ++  +L H  ++TTQIY ++ +    +   +I
Sbjct: 297 IYTVSKMLTHKNVTTTQIYADLVNSKKRETANKI 330


>gi|3930211|gb|AAC80279.1| transposase [Bacteroides fragilis]
          Length = 410

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/315 (18%), Positives = 113/315 (35%), Gaps = 37/315 (11%)

Query: 14  LLKERQNWLQNLEIER----GLSKLTLQSYE---CDTRQFLIFLAFYTEEKITIQTIRQL 66
           LLK  +    N E E+      ++ T   Y       R+FL     Y  E I ++ +   
Sbjct: 109 LLKLFEQ--HNAEFEKKVGHSRAQGTFTRYRTVCNHIREFLPH--TYKREDILLKELNLT 164

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSL 125
              +   F+  R  +K    ++   +  +K  +   +       +     + + +  +  
Sbjct: 165 FINDFEYFL--RTEKKCRTNTVWGYMIVLKHIVSIARNDGRLPFNPFAGYINSPENVDR- 221

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN---IM 182
              L + +  TL++  + + +HE          +       GL  S+  +LT        
Sbjct: 222 -GYLTQTEIQTLMNAPMKNATHELV------RDLFVFSVFTGLAYSDVKNLTTDRLQTFF 274

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           D    +  + K         L  V K I+E Y     D ++               + G 
Sbjct: 275 DGNLWIITRRKKTNTESNIRLLDVPKRIIEKYKGLARDGHVFPVP-----------SNGS 323

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHS-FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             + ++ + R  G  +  T H  RH+   T LLS+G  + ++  +LGH  + TTQIY  +
Sbjct: 324 CNKILKDIGRQCGFKVRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKI 383

Query: 302 NSKNGGDWMMEIYDQ 316
            ++     M  +  +
Sbjct: 384 TAQKISQDMETLSHK 398


>gi|325956124|ref|YP_004286734.1| integrase [Lactobacillus acidophilus 30SC]
 gi|325332689|gb|ADZ06597.1| integrase [Lactobacillus acidophilus 30SC]
          Length = 290

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 102/287 (35%), Gaps = 39/287 (13%)

Query: 48  IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG---DRSLKRSLSGIKSFLKYLKK 104
            FL  +  + +    I +L+      F  +R  QK      ++    +      L Y  +
Sbjct: 6   QFLKNHILKDLGSYYIERLTP-----FKCQRVAQKWALELPKTFNTLIIYSNKLLDYAVR 60

Query: 105 RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLY 164
                ++ ++ ++  K++    +   +      ++  L  + +E   I         LL 
Sbjct: 61  FDYIRKNPMI-IKPKKQAEH--KEFTDFYTKQELNAFLKASKNENIKI----YTFFRLLA 113

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQG----------------KGDKIRIVPLLPSVRK 208
             G+R  EAL+L   +I    +T+ I                  K  + R + +     +
Sbjct: 114 YSGMRKGEALALKWSDIDFTSNTISINKTVSIGNKHRVVVNNTTKTKRNRAISMDARTMQ 173

Query: 209 AILEYYDLCPFDL------NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            + E+       L        + +  +F+    + + P +   + +++    GL      
Sbjct: 174 LLKEWRFQQRRYLLQLGFNPFDKEQVVFQNFDNEVVRPNLVAVWNKRICDKNGL-RRIKT 232

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGD 308
           H  RH+ A+ L   G  +  ++  LGH  + TT  IYT+V  +    
Sbjct: 233 HGFRHTHASLLFDAGVPMEDVKQRLGHASIQTTMDIYTHVTKEKQDK 279


>gi|225853634|ref|YP_002735146.1| integrase [Streptococcus pneumoniae JJA]
 gi|225723768|gb|ACO19621.1| integrase [Streptococcus pneumoniae JJA]
 gi|332077315|gb|EGI87776.1| phage integrase family protein [Streptococcus pneumoniae GA41301]
          Length = 238

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 86/231 (37%), Gaps = 26/231 (11%)

Query: 100 KYLKKRKITTESNILNMRNLKK-------SNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           K+  +      + +L +   +K            + L++K+    + N+      + +  
Sbjct: 2   KFAIRMNYIDTNEMLFVETPRKVITSDELRKKNTKYLDQKEFKLFIQNLKDEALCDYRIT 61

Query: 153 DARNSAILYLLYGCGLRISEALSLTP-QNIMDDQSTLRIQGKGDK-------------IR 198
                 I  +L+  G+R  E  +L   ++I   + T+ I+   D               R
Sbjct: 62  KYIR--IAKVLFLTGMRYGELAALNYKEDIDFSKKTIHIKHTYDFRQKERTTPKTIKSDR 119

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           ++     V   I E   +     N      +F    G+P+        +++  + +G+  
Sbjct: 120 VITAPQKVLDIIKE--QIIENATNGFDTDFIFINTLGEPITNARVICALKRHGQKIGIEK 177

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
           + T HT RHS  + L   G  L +I   +GH    TT +IY++V  K   D
Sbjct: 178 NITTHTFRHSHISLLAELGIPLTAIMDRVGHSDSKTTLEIYSHVTQKMVSD 228


>gi|89147394|gb|ABD62557.1| integrase [uncultured bacterium]
          Length = 163

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 47/90 (52%)

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           E+     F        P     +   +     Q+ +R   R  G+  + + H+LRHSFAT
Sbjct: 73  EWGWQYIFPAQKRSFDPRTGREQRHHIAETALQKAVRAAIRAAGITKTGSCHSLRHSFAT 132

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           HLL  G D+R+IQ ++GH  +STT IYT+V
Sbjct: 133 HLLEAGYDIRTIQELMGHADVSTTMIYTHV 162


>gi|258454466|ref|ZP_05702433.1| integrase [Staphylococcus aureus A5937]
 gi|437117|gb|AAA91615.1| integrase [Staphylococcus phage phi-42]
 gi|257863323|gb|EEV86084.1| integrase [Staphylococcus aureus A5937]
          Length = 345

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 112/278 (40%), Gaps = 18/278 (6%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           + T + Y    +          + KI    + +++    + FI+    +   + +++++ 
Sbjct: 74  ENTYRHYRNALQH-------IQKHKIGKMELSKINRQVYQKFINDYSKEHAKE-TIRKTN 125

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             I+S L       +  ++    + N K         +E++    V    +   H  K  
Sbjct: 126 GAIRSALDDALYDGLIFKNPAYKV-NYKAGKP---TKSEQEKFISVTEYEILKDHVRKKR 181

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
              + A+  ++   G R+S A ++  ++I   ++T+ I  +        +  S+ K+ ++
Sbjct: 182 TRSSLALF-IMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYI--SIAKSDMK 238

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +         ++    +F+      +N       ++   R   +P+  T+H LRH+  ++
Sbjct: 239 HIMDVISTFAISYDGYIFKEAGSI-INLQAINNALKSACRVNNIPI-ITSHALRHTHCSY 296

Query: 273 LLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDW 309
           LL+ G  +  I   LGH  ++ TT +Y+++  +   + 
Sbjct: 297 LLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEE 334


>gi|329955504|ref|ZP_08296412.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
 gi|328525907|gb|EGF52931.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
          Length = 333

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 97/263 (36%), Gaps = 35/263 (13%)

Query: 62  TIRQLSYTEIRAFISKRRTQK--------IGDRSLKRSLSGIKSFLKYLKKRKITTESNI 113
           T   ++    + F       K        +   S     S  ++ LK   + K+  E+  
Sbjct: 92  TFGDVTVELCQKFRQYLLNCKQIRHPNISVSRNSAAGYFSTFRALLKIAYQEKMLRENLN 151

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
             +  ++      + L   +   L        +   K    + +++   +   GLRIS+ 
Sbjct: 152 DFIDKIEWKEVKKQYLTLAEVKKL-------AATPCKIPVLKQASLFSCM--TGLRISDI 202

Query: 174 LSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
           L LT  NI    D+   +RI  +  +           +A L   +       +     +F
Sbjct: 203 LQLTWDNIEVGPDNGYYIRICTEKTET----------EATLPISNEALELCGIPGSGRVF 252

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
           +G     L   +  + ++Q     G+    T H  RHS+A   +S G D+ ++  +L H 
Sbjct: 253 KG-----LTRAMTNQPLKQWISEAGIKKHITFHCFRHSYAVIQISLGTDIYTVSKMLTHK 307

Query: 291 RLSTTQIYTNVNSKNGGDWMMEI 313
            +STTQIY ++ +    +   +I
Sbjct: 308 NVSTTQIYADLVNSKKRETANKI 330


>gi|315651719|ref|ZP_07904724.1| tyrosine recombinase XerC [Eubacterium saburreum DSM 3986]
 gi|315485974|gb|EFU76351.1| tyrosine recombinase XerC [Eubacterium saburreum DSM 3986]
          Length = 280

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 83/213 (38%), Gaps = 21/213 (9%)

Query: 103 KKRKITTESNILN--MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
               +          ++    S    + LN+ +  +L+ ++ L       W        +
Sbjct: 61  VDEGLVPRDPTRKVIIKGKIPSKKKVKYLNQFELHSLLKSLTLSNEVSWDW-------FI 113

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEYYD 215
            LL   G+R SE L++TP +      T+ +    +        P     SVRK  +++  
Sbjct: 114 LLLAKTGMRFSEGLAITPNDFDFAHQTVSVNKTWNYKEGGGFSPTKNKSSVRKIQIDWQV 173

Query: 216 LCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +  F      L    P+F   R   +        + +  + L +P+  + H LRH+ A+ 
Sbjct: 174 VMQFATLVKELPADEPIFV--RDNNVYNSTVNDILVRYCKKLNIPV-ISVHGLRHTHASI 230

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           LL  G  + S+   LGH  ++TTQ  Y +V  +
Sbjct: 231 LLYAGVSIASVARRLGHASMTTTQKTYLHVIQE 263


>gi|301164997|emb|CBW24563.1| putative bacteriophage integrase [Bacteroides fragilis 638R]
          Length = 452

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/299 (17%), Positives = 117/299 (39%), Gaps = 31/299 (10%)

Query: 46  FLIFLAFYTEEKITIQTI--RQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYL 102
           F  FL    +      +I    ++   + ++IS RR  ++  D ++  SL+ I     Y 
Sbjct: 156 FQTFLRATRQGTYRSDSIYVGDMTPELLDSYISWRREIKQNSDATINHSLTPILKACAYA 215

Query: 103 KKRKITTESNILNMRNLKKSNSLP----------RALNEKQALTLVDNVLLHTSHETKWI 152
            +  +   +    +++++    +           ++L+++Q   L++     T    K  
Sbjct: 216 CEMGMMEPAVNARIQDMRIVTKVSLSEEEAEFDGKSLSKEQMAALLEYYKACTEPRRK-- 273

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSVRKAIL 211
                   +  + CGLR+ + ++L  ++I   +  LR I  K +K  ++PL     + + 
Sbjct: 274 -EFLEMFFFAFHACGLRVVDVMTLQWKHIDFARKELRKIMIKTNKRHVIPLTEPALRILQ 332

Query: 212 EYYDLC----------PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           ++ +               L+L+    L++             + +  +   +GLP S +
Sbjct: 333 QWQEKRAGCRYVFDLVKETLDLDDAEALYKARNNA---TKCINQSLAVVGEQIGLPFSLS 389

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQTHP 319
            H  RHSFA   L+ G  +  +  +LGH     T+ +Y     +     +  + D+  P
Sbjct: 390 MHAARHSFAVFALNKGLSMSVVSRLLGHGSTDVTEKVYARFLPETLSAEVARLKDELTP 448


>gi|289549679|ref|YP_003470583.1| Tn554-related, transposase B [Staphylococcus lugdunensis HKU09-01]
 gi|289179211|gb|ADC86456.1| Tn554-related, transposase B [Staphylococcus lugdunensis HKU09-01]
          Length = 690

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 61/336 (18%), Positives = 117/336 (34%), Gaps = 28/336 (8%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           N   I SF +    + +L+   I   L+  T + Y     +F  F + + +E      + 
Sbjct: 220 NFKSIGSFNIRNSVKRYLKQRLITGNLNFATGRVYVRVLSRF--FNSIHNQEP-NWNDLN 276

Query: 65  QLSYTEIRAFISK--RRTQKIGDRSLKRS----LSGIKSFLKYLKKRKITTESNILNMRN 118
            L    +  +I    +  +    RS+K      L  ++ FL  +   K +    I ++R 
Sbjct: 277 NLERNHMEVYIDSIFKYAKSKNVRSVKNFVREELKLVRRFLNDIIMEKYSIA-PIEDIRF 335

Query: 119 LKKSNSLPR--ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           L     LP+   + + Q   + D VL         +      I+++ +  GLRIS+ L+L
Sbjct: 336 LFLPQDLPKHEKIEKNQIDYIPDFVLDQLFENINSLPEEIIPIIWIAFKTGLRISDVLTL 395

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY------DLCPFDLNLNIQLPLF 230
               +        I     K  +      + + + +               + N    +F
Sbjct: 396 KDNCLTKINGKYSIVTDIAKTFVKGHRIPIDEQLADILAVLIASSKRQSTKDNNPNNYIF 455

Query: 231 R----GIRGKPLNPGVFQRYIRQLRRYLGLP------LSTTAHTLRHSFATHLLSNGGDL 280
                  +G P    + + ++  L +   +            H  RH++A  LL+ G D+
Sbjct: 456 VIYKGKRKGMPYTQHLVRSHLNYLAKTKNIIDEKGEIFHFKTHQFRHTYAVKLLNGGVDI 515

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            +IQ +L H     T  Y  +           + DQ
Sbjct: 516 LTIQELLAHASPEMTLRYAKLLDDTKRKAFESVIDQ 551


>gi|251810403|ref|ZP_04824876.1| bacteriophage integrase [Staphylococcus epidermidis BCM-HMP0060]
 gi|251806007|gb|EES58664.1| bacteriophage integrase [Staphylococcus epidermidis BCM-HMP0060]
          Length = 349

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/318 (16%), Positives = 129/318 (40%), Gaps = 34/318 (10%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           +GNN+ +  + + +    +W++ ++ ++ LS      YE   + F  +            
Sbjct: 55  DGNNIED--NKKFVDYYDDWIK-IKNKKQLSSKQFYWYERSIKLFSEYFGENML------ 105

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            ++ ++ +E + F+++   Q   D ++++    +   ++         +    N+ N+K 
Sbjct: 106 -VKNITRSEYQKFLNQ-YAQGHTDETVRKVHGCLARCIRDALYDGYLKKDPTYNV-NIKG 162

Query: 122 SNSLP----RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           +        + +  K  L L+D          K  D  +  +LYLL   G R S+ +++T
Sbjct: 163 TEKAKDEKFKFITIKDYLNLLDYF--------KKRDEESYVLLYLLGITGARYSDVINMT 214

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
            +++      + + G   K     +  + +  +     L      ++ +L          
Sbjct: 215 YKDLNKANGIIHLPGTKTKNSKRDVEVNSKDIMHINSKLAKMPRRIDGKL--------FS 266

Query: 238 LNPGVFQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT- 295
           ++     +  R+ +  +GL  +  T ++LRH+  ++LLS G  +  I   LGH  +S T 
Sbjct: 267 VSHTSVSKAFRKAKEVIGLNDNNITPYSLRHTHTSYLLSKGIPIEYISKRLGHATISQTL 326

Query: 296 QIYTNVNSKNGGDWMMEI 313
             Y+++  ++  +    +
Sbjct: 327 DTYSHLLEEHKKEQGQRV 344


>gi|215407982|emb|CAS02318.1| integron integrase [uncultured bacterium]
          Length = 149

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 48/92 (52%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 58  RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 117

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           SFAT LL +G D+R++Q +LGH  +STT IYT
Sbjct: 118 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 149


>gi|30908740|gb|AAP37602.1| IntI [uncultured bacterium]
          Length = 161

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/110 (33%), Positives = 51/110 (46%)

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G GD      L     +A  E+     F        P    IR   +      R ++Q  
Sbjct: 52  GYGDVELPDALARKYPRAPYEWGWKFVFPSGKISTDPRTGVIRRHHVYENYVIRGVKQAA 111

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               +    + HTLRHSFATHLL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 112 HAARIDKHVSCHTLRHSFATHLLEDGYDIRTVQELLGHSSVETTMIYTHV 161


>gi|298484133|ref|ZP_07002300.1| integrase [Bacteroides sp. D22]
 gi|298269723|gb|EFI11317.1| integrase [Bacteroides sp. D22]
          Length = 321

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/299 (19%), Positives = 102/299 (34%), Gaps = 37/299 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + ++  L  E   S  T   Y+     F  F            + RQ++   +R +    
Sbjct: 12  EFYIGRLRKEGRYS--TAHVYKNALFSFSKFCGTLN------VSFRQVTRESLRRYGQYL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-----NLKKSNSLPRALNEKQ 133
               +   ++   +  ++S      +  I      L        ++++  +LP       
Sbjct: 64  YECGLKPNTISTYMRMLRSIYNRGVEAGIAPYVPRLFHDVYTGVDVRQKKALPAV----- 118

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLY-GCGLRISEALSLTPQNIMDDQSTLRIQG 192
                +   L           R  AI  L++  CG+  ++   L       +Q+ LR   
Sbjct: 119 -----ELHKLLYEDPKSERLRRTQAIAALMFQFCGMSFADLAHLEKSA--LEQNVLRYNR 171

Query: 193 -KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY----- 246
            K      V +L + R+ I +  +      +    L        K L+   ++ Y     
Sbjct: 172 IKTKTPMSVEVLDTAREMINQLRNREDAQPDCPDYLFDILSGDQKRLDERGYREYQSALR 231

Query: 247 -----IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                ++ L R L L    T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 232 QFNNCLKDLARALHLQSPVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLK 290


>gi|298252095|ref|ZP_06975898.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297546687|gb|EFH80555.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 338

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 65/325 (20%), Positives = 118/325 (36%), Gaps = 34/325 (10%)

Query: 1   MEGNNLPEIVSFELLK-ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-KI 58
           ME   L  +V+   +      WL +    R  S  T ++YE     F   L  +  +   
Sbjct: 1   MEEQALSTLVTSNHIDLAIMAWLDSKR-RRSGSAKTHKAYEETLWAFRSLLRQHARDLDP 59

Query: 59  TIQTIRQLSYTEIRAFISKR------------RTQKIGDRSLKRSLSGIKSFLKYLKKRK 106
            I  +   +  E +  +++               + I + +  + L+ + SF  +  KR 
Sbjct: 60  FIHLLPDANEQEKQQALTELALTAQGFAGQSVHERLISEATYNQRLANLSSFYTFANKRG 119

Query: 107 ITT-ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
               E+ I  +   K         N +          + T   T    AR+ A+L +   
Sbjct: 120 FFQCENPIAKVERSKVQA----YKNAQPIDAQEIAQRMQTIDRTTKQGARDYAMLAIFLQ 175

Query: 166 CGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCP--FD 220
            G R+SE ++L  +++    S + +     KG K     L P +  A+LE+  L      
Sbjct: 176 TGRRLSEVIALRWRHVQVQGSKIILVFENCKGGKAMRDTLTPGIANALLEWLVLAYGANL 235

Query: 221 LNLNIQLPLFRGIRGKPL------NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
             L+ + P++     +         P   +       ++LG       H  RH++A  + 
Sbjct: 236 RRLHPEAPIWISFTRQAERDGTLPTPLTIRSVANICEKHLGTSK---VHVTRHTWARTME 292

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYT 299
             G  +  IQ+ LGH  L+TT  Y 
Sbjct: 293 DAGAKVSEIQARLGHESLATTGRYL 317


>gi|226361766|ref|YP_002779544.1| transposase for insertion sequence element [Rhodococcus opacus B4]
 gi|226240251|dbj|BAH50599.1| putative transposase for insertion sequence element [Rhodococcus
           opacus B4]
          Length = 538

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 62/338 (18%), Positives = 119/338 (35%), Gaps = 33/338 (9%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGL-SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           LPE    ++ +  + +LQ L ++  L    T+       R+ + +L  +  E  ++  + 
Sbjct: 96  LPEPCPPKIREVIERYLQ-LRLDAKLDRPQTVHHARQALRRLVNWLGAHHPEVTSLAQLD 154

Query: 65  QLSYTEIRAFI----SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMR- 117
           + +  E   ++    S+   Q +   ++K  L+ I  F +     +        +L  R 
Sbjct: 155 RATIEEYMRWLPSCPSQHTGQPLTTTTVKHELNAIAGFCRDTAVWEWAEVPGRPLLTSRD 214

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
             ++  S+ R L + +   ++  +   T    +                G R  E   LT
Sbjct: 215 TPRRPESIHRYLPQHELDAIMTAIEDLTDPLQRAALLLLRW-------SGARRDEIRRLT 267

Query: 178 PQNIMDDQST---LRIQ-GKGDKIRIVPLLPSVRKAIL--------EYYDLCPFDLNLNI 225
              +         LRI  GKG   RIVPL P    A+         +       ++    
Sbjct: 268 WDCLDTYPGGHPRLRIPVGKGHTERIVPLHPDAAAALENAIGLARAQRSIARIDEVTGRR 327

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-----PLSTTAHTLRHSFATHLLSNGGDL 280
              +F           +F    R +    GL       + +AH LRH+  T L   G  +
Sbjct: 328 VDYVFVRRGKLLSVKTLFDEAFRTVCGATGLVDDRGSPTVSAHRLRHTLGTQLAEGGARI 387

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           ++I ++LGH   + + IY+ ++               H
Sbjct: 388 QTIMAVLGHRSATMSMIYSRISDPEIRRQYETALADGH 425


>gi|257414148|ref|ZP_04745384.2| transposase [Roseburia intestinalis L1-82]
 gi|257201069|gb|EEU99353.1| transposase [Roseburia intestinalis L1-82]
          Length = 425

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/324 (14%), Positives = 118/324 (36%), Gaps = 46/324 (14%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + +  + G+   T  +Y          +    +E    + I  +  ++ + ++ K +   
Sbjct: 107 KYIRQKTGVRHNTQANYN-------FVINIIAKEDFGQKRIDTIKLSDAKEWLIKLQADG 159

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKKSNSLPR-ALNEKQALTLVDN 140
            G  S+      ++   +     ++  ++     +  +  ++S+ R A+  KQ   L++ 
Sbjct: 160 RGYSSIHSIRGVVRPAFQMAVDDELLRKNPFEFQLSTVVVNDSVTREAITRKQERALLEF 219

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           V         +        +Y+L+  GLRISE + L   +I  +  T+R+  +  + R +
Sbjct: 220 VKNDKHFSRYYEG------IYILFKTGLRISEFVGLQKSDIDFESGTIRVDHQLQRKRDM 273

Query: 201 ------------------------PLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRG 235
                                        + K      +    D N       L+     
Sbjct: 274 ECIIEDTKTPDGVRFLPMTKEVRECFECIIAKRKRPKIEPTVRDKNGKLYHGFLYLDKND 333

Query: 236 KPLNPGVFQRYI-RQLRRYLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
            P+    +++Y    + +Y  +        T H  RH++ +++  +G + +++Q ++GH 
Sbjct: 334 MPMVALHWEKYFEHIITKYNSIYKEELPKVTPHVCRHTYCSNMAKSGMNPKTLQYLMGHA 393

Query: 291 RLSTT-QIYTNVNSKNGGDWMMEI 313
            +  T   YT+V   +  + +  +
Sbjct: 394 DIGVTLNTYTHVGLDDVKNEIDRV 417


>gi|159184660|ref|NP_526319.1| phage-related integrase [Agrobacterium tumefaciens str. C58]
 gi|17739597|gb|AAL42205.1| phage-related integrase [Agrobacterium tumefaciens str. C58]
          Length = 388

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 83/257 (32%), Gaps = 17/257 (6%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            + +L   ++    SK         ++ R ++ +   L   +   I       N    K+
Sbjct: 101 PVAKLGKADVDRARSKLLAAGNAPGTVNRKVAALSKCLSEAEDLGIIERKPKCN--KYKE 158

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           S    R     +     +   L         D  +  +L L    G+R SE LSL  ++I
Sbjct: 159 SEHRVRRFTPDE-----EKKTLAFFDRIGHQDMADYTVLSL--DTGMRQSEVLSLHFEDI 211

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
            + + T+   G     R                 +            +F       L+  
Sbjct: 212 QNGRVTVWGVGATG-QRTKSGKSRTVPLTARAQAVFDRRREYTEGKAVFPS-----LSKN 265

Query: 242 VFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               Y  +L   L L        H LRH F + L SNG +  +IQ + GH  L  TQ Y 
Sbjct: 266 SVAHYWGRLSEALNLESDKQFVPHILRHEFCSRLASNGENAAAIQKLAGHATLLVTQRYV 325

Query: 300 NVNSKNGGDWMMEIYDQ 316
           ++      D +  +  +
Sbjct: 326 HLFGDELDDVIGRMEKK 342


>gi|313156953|gb|EFR56386.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 407

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 111/289 (38%), Gaps = 29/289 (10%)

Query: 35  TLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
           T + Y C  ++   FLA  Y  E I ++ +      +   F+  R  +K    ++   + 
Sbjct: 132 TWKKYCCVCKRVREFLAHTYHREDIPLKELNLTFINDFEYFL--RTEKKCRTNTVWGYMI 189

Query: 94  GIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
            +K  +   +       +     + + +  +     L++++   +++    + +H     
Sbjct: 190 VLKHIVAIARNDGRLPFNPFSGYINSPESVDR--GYLSQEEIKAVMNYKTANKAH----- 242

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
            AR   +       GL  ++   LT  N       +   +  + K +    + LL   ++
Sbjct: 243 -ARIRDLFVFSIFTGLAYADVKGLTTDNLQTMFDGNLWIITRRKKTNTESRIRLLDIPKR 301

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            I +Y        +  +   +F        N       +R++ +  G+    T H  RH+
Sbjct: 302 IIEKY-------ADQRLDNHVFYMPCNCHCND-----ILREIGKQCGIKNKLTFHMARHT 349

Query: 269 FATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           FAT + LS G  + ++  +LGH  + TTQIY  + ++     M  + ++
Sbjct: 350 FATTITLSQGMPIETVSCLLGHTNIKTTQIYAKITNEKISRDMSALTER 398


>gi|329961823|ref|ZP_08299837.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328531263|gb|EGF58107.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 394

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 56/285 (19%), Positives = 107/285 (37%), Gaps = 20/285 (7%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           L + T +++         F            +   L++  I +F    +++     ++ +
Sbjct: 120 LKESTKRNHLSTLTLLQEFKKDV--------SFSDLTFEFISSFEYFLQSKGYHTNTIAK 171

Query: 91  SLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
            +  +K  +     +     +        +K   +    L  ++   L    L+     T
Sbjct: 172 HMKHLKRHINVAINKDYMEIQKYAFRKYKIKTIENKHTHLAPEELEKLERLNLIG--RYT 229

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           K+    + A L+  Y  G+R S+ +SLTP NI++      +  K  K      LP     
Sbjct: 230 KYQKTLD-AFLFCCYA-GMRYSDFISLTPDNIVEIHKETWLIYKSVKTNTEVRLPL---Y 284

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +L               +  F  +R          + +  L R  GL    + HT RH+ 
Sbjct: 285 LLFEKKGLVILEKYQDNIQDFFHLRDN----SNVNKDLIILARLAGLSKKISFHTARHTN 340

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           AT L+ NG ++ ++Q +LGH  + TTQ+YTNV        + + +
Sbjct: 341 ATLLIYNGVNITTVQKLLGHKSVKTTQVYTNVMDMTIVHDLEKNH 385


>gi|323172233|gb|EFZ57871.1| integrase [Escherichia coli LT-68]
          Length = 347

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 97/256 (37%), Gaps = 38/256 (14%)

Query: 74  FISKRRTQKIGDRSLKR---SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           + S++  +     ++      LSG+  F +  +  + T  + + NMR    +      L 
Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSGV--FSELARLGEWTAPNPLENMRKFTIAEKEMAWLT 176

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
            +Q   L+ +    +           + ++ +    G R  EA++LT   +   + T  +
Sbjct: 177 HEQITELLFDCQRQSP--------LLALVVKICLSTGARWREAVNLTRSQVTKYRITF-V 227

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           + KG K R +P+   + + I+                 LF            FQ      
Sbjct: 228 RTKGKKNRSIPISKELYEEIVAL-----------DGFKLF--------TDCYFQFLAVMD 268

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           R  + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++   +    +
Sbjct: 269 RTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHLETAL 328

Query: 311 MEIYDQTHPSITQKDK 326
                  +P  T   K
Sbjct: 329 R-----FNPLATLSTK 339


>gi|312969130|ref|ZP_07783337.1| integrase [Escherichia coli 2362-75]
 gi|312286532|gb|EFR14445.1| integrase [Escherichia coli 2362-75]
          Length = 350

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 92/239 (38%), Gaps = 29/239 (12%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + S++  +     ++    S + S F +  +  + +  + + NMR    +      L  +
Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q + L+         + K  D   + ++ +    G R  E ++LT   +   + T  ++ 
Sbjct: 179 QIVELL--------ADCKRQDPILALVVKICLSTGARWREDVNLTRSQVTKYRITF-VRA 229

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+   + + I+       F                       FQ      + 
Sbjct: 230 KGKKNRSIPISKELYEEIMALDGFNFF-------------------TDCYFQFLSVMEKT 270

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++   +    + 
Sbjct: 271 SIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHLETALR 329


>gi|295086152|emb|CBK67675.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 410

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 56/316 (17%), Positives = 115/316 (36%), Gaps = 39/316 (12%)

Query: 14  LLKERQNWLQNLEIER----GLSKLTLQSYE---CDTRQFLIFLAFYTEEKITIQTIRQL 66
           LLK  +    N E E+      ++ T   Y       R+FL     Y  E I ++ +   
Sbjct: 109 LLKLFEQ--HNAEFEKKVGHSRAQGTFTRYRTVCNHIREFLPH--TYKREDIPLKELNLT 164

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSL 125
              +   F+  R  +K    ++   +  +K  +   +       +     + + +  +  
Sbjct: 165 FINDFEYFL--RTEKKCRTNTVWGYMIVLKHIISIARNDGRLPFNPFAGYINSPESVDR- 221

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN----I 181
              L   +  TL++  + + +HE          +       GL  S+  +LT        
Sbjct: 222 -GYLTRTEIQTLMNAPMKNATHELV------RDLFVFSVFTGLAYSDVKNLTTDRLQTFF 274

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
             +   +  + K +    + LL   ++ I +Y         L     +F        + G
Sbjct: 275 DGNLWIITRRKKTNTESNIRLLDVPKRIIKKY-------KGLARDGHVFPVP-----SNG 322

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHS-FATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              + ++++ R  G  +  T H  RH+   T LLS+G  + ++  +LGH  + TTQIY  
Sbjct: 323 SCNKILKEIGRQCGFKVRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAK 382

Query: 301 VNSKNGGDWMMEIYDQ 316
           + ++     M  +  +
Sbjct: 383 ITAQKISQDMETLSHK 398


>gi|226223149|ref|YP_002757256.1| bacteriophage integrase [Listeria monocytogenes Clip81459]
 gi|225875611|emb|CAS04314.1| Putative bacteriophage integrase [Listeria monocytogenes serotype
           4b str. CLIP 80459]
          Length = 309

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 82/213 (38%), Gaps = 21/213 (9%)

Query: 103 KKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
               +  ++    +    +N +   +  + LN+ +   L+  + L       W       
Sbjct: 90  VDEGVLNQNPTRKIVIKGKNPRPKKA--KFLNQFEVQVLLKELNLKEDINWDW------- 140

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212
            + L+   GLR SEAL+LTP +       + I    D   +             RK  ++
Sbjct: 141 FILLIIKTGLRFSEALALTPSDFDFSTQKISINKTWDYKMVTGSFQPTKNESSNRKIQID 200

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +     F   + ++           +        ++ L +   +P + T H+LRH+ A+ 
Sbjct: 201 WQLAMQFSQLIKMKDSDKPIFVKSRVFNSTINNRLKVLCQNANIP-TITIHSLRHTHASL 259

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           LL  G  + S+ + LGH  ++TTQ  Y ++  +
Sbjct: 260 LLFAGVSIASVANRLGHSSMTTTQETYLHIIQE 292


>gi|89147336|gb|ABD62530.1| integrase [uncultured bacterium]
          Length = 163

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 66/162 (40%), Gaps = 37/162 (22%)

Query: 177 TPQNIMDDQSTLRIQ-GKGDKIRIVPLLP---SVRKAILEYYDLCPFDLNLNIQLP---- 228
             +++  D   + +  GKG K R   L        K ++E   L   D NL    P    
Sbjct: 1   RVKDLDFDNGCITVHDGKGGKSRNSLLPTRLIPAIKQLIEQARLIQQDDNLQGVGPSLPF 60

Query: 229 -----------------LFRG-----------IRGKPLNPGVFQRYIRQLRRYLGL-PLS 259
                            +F             +    L+  V ++ ++   +  G+    
Sbjct: 61  ALDRKYPSAYRQAAWMFVFPSSTLCNHPYNGKLCRHHLHDSVARKALKAAVQKAGIVSKR 120

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGHDIRTVQELLGHTDVKTTQIYTHV 162


>gi|158421558|ref|YP_001527785.1| integrase family protein [Deinococcus geothermalis DSM 11300]
 gi|158342801|gb|ABW35087.1| integrase family protein [Deinococcus geothermalis DSM 11300]
          Length = 310

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/295 (16%), Positives = 100/295 (33%), Gaps = 37/295 (12%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L++    RG S+  +++Y    R FL +         T + +          +      +
Sbjct: 41  LRHDAERRGTSENAIRTYAAGVRAFLTWA------WQTGRDVLDPDPDLALDWTRHLERR 94

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN-----LKKSNSLPRALNEKQALT 136
                ++    + + +  +  +    TT   + +         +     P   +E +   
Sbjct: 95  GASAGTITTYRAAVSALYRAFRWAGATTADPMRDAPRVRDPVPRHEKRRP--YSETELRA 152

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+      T  E  ++       L        R +EA +    ++     TL ++GKG K
Sbjct: 153 LL---AAATPDERVFLLLSGLGGL--------RNAEARAARWADVDWHAGTLLVKGKGGK 201

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           +R V L   V   + E +     D  L  + P               +  ++ L    G+
Sbjct: 202 VRRVYLGRDVLLELREAHVRAGGDFVLRWRDP------------DTLRGKLKALCHRAGV 249

Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           P      H LRH+  T L     +L  +   LGH ++ T+++Y    +    D +
Sbjct: 250 PYEGRAFHGLRHTAGTVLYRRTRNLDDVARHLGHSQIETSRVYAEHENSATRDAL 304


>gi|113473887|ref|YP_718150.1| putative integrase [Sphingomonas sp. KA1]
 gi|112821567|dbj|BAF03438.1| putative integrase [Sphingomonas sp. KA1]
          Length = 515

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 63/300 (21%), Positives = 122/300 (40%), Gaps = 22/300 (7%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P     E+  +   +L  L+  RG +  T++ Y  +  + +  L                
Sbjct: 217 PVEAKLEVHPDVAAYLGWLKQHRGATDATIRRYRPEVDRLIAMLGAPVL----------W 266

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--S 124
               +R+  ++R  +     S+   ++ ++SFL++L  +     + +  + ++++    +
Sbjct: 267 DAAGLRSAFARRSKE--TPGSVSLLVTIMRSFLRFLIGQGQCRPALLHAIPSVQRYRLST 324

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LPR ++      ++           + +  R+ AI+ LL   GLR S+   +   +I   
Sbjct: 325 LPRYVDPATIERII-----SACPTDRPVQIRDKAIILLLARLGLRASDIRDMRLDDIDWR 379

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV-F 243
              L ++GK  +   +PL   V  AIL Y         ++  L L      + L+     
Sbjct: 380 SGHLIVKGKSRRSERLPLPQDVGDAILAYLSTA-RPKAIDRHLFLRAHAPFRSLSSSAEI 438

Query: 244 QRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              + +     G+  L T +H  RHS AT++L  G  L S+ +IL H    TT IY  V+
Sbjct: 439 AGIVARTLERSGIEGLPTGSHIFRHSLATNMLRAGAGLESVGTILRHSSPETTAIYAKVD 498


>gi|758229|emb|CAA57755.1| integrase [Staphylococcus phage phi13]
          Length = 345

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 112/278 (40%), Gaps = 18/278 (6%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           + T + Y    +          + KI    + +++    + FI+    +   + +++++ 
Sbjct: 74  ENTYRHYRNALQH-------IQKHKIGKMELSKINRQVYQKFINDYSKEHAKE-TIRKTN 125

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             I+S L       +  ++    + N K         +E++    V    +   H  K  
Sbjct: 126 GAIRSALDDALYDGLIFKNPAYKV-NYKAGKP---TKSEQEKFISVTEYEILKDHVRKKR 181

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
              + A+  ++   G R+S A ++  ++I   ++T+ I  +        +  S+ K+ ++
Sbjct: 182 TRSSLALF-IMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYI--SIAKSDMK 238

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +         ++    +F+      +N       ++   R   +P+  T+H LRH+  ++
Sbjct: 239 HIMDVISTFAISYDGYIFKEAGSI-INLQAINNALKSACRVNNIPI-ITSHALRHTHCSY 296

Query: 273 LLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDW 309
           LL+ G  +  I   LGH  ++ TT +Y+++  +   + 
Sbjct: 297 LLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEE 334


>gi|307565773|ref|ZP_07628242.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345599|gb|EFN90967.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 409

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 92/274 (33%), Gaps = 25/274 (9%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSLKRSLSG 94
           +  Y         F+      K++     QL+   I  F           + +     + 
Sbjct: 134 IHGYHSTRIHLQKFIQRKY--KVSDLAFSQLTEDFIHEFQQYFLGECGFQESTFYNVATH 191

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +K+  +   +  +        ++  K +  LP+AL+++    L          E +    
Sbjct: 192 LKTVCRLAYREGLADTLLFDKVKISKGNKKLPKALDKEALEKLKALCFEDLEEEMETA-- 249

Query: 155 RNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210
               I       G    + + L+  +     + +  L+  + K      + LLP   + I
Sbjct: 250 --RDIFLFACYVGAAYCDLMELSKSHLVRDDEGKMWLKFNRHKTGVPCRIKLLPEAIRLI 307

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
             ++      L                +    +Q  ++ LR   G+    T HT RH+FA
Sbjct: 308 ERFHCDERETL-------------LPYIKYKSYQTCLKALRLRAGISFPFTTHTARHTFA 354

Query: 271 THL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           T + L  G  + ++  +LGH  +S T+ Y  V  
Sbjct: 355 TLITLEQGVPIETVSKMLGHSNISMTERYAKVTP 388


>gi|284989441|ref|YP_003407995.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284062686|gb|ADB73624.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 370

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 104/303 (34%), Gaps = 47/303 (15%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            L   TL SY          LA           + ++ ++++ A+++  R + +     +
Sbjct: 71  HLKPKTLSSYRS-------LLATRVLPTWNTVPLTRIRHSDVVAWVAAMRAE-LSASRTR 122

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           ++   + S L    +      +    +   +   S  R L  +Q   L D          
Sbjct: 123 QAYHLLSSMLDDAVRDNRLARNPATGVGLPRLPKSDRRYLTHQQLADLADGC-------- 174

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--------------QGKGD 195
                 +  ++ +    GLR  E   L  + +   +  + +                K  
Sbjct: 175 ----GPHRLMVLVAGYTGLRWGELTGLRARRVESLRGRIDVVEAVTEVDGGMVFGTPKTH 230

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-YIRQLRRYL 254
           + R V +   +R+ +                  +F    G PL    F+R +  +    +
Sbjct: 231 QHRSVVVPRFIREDL------GRQLAGKAPADLVFASRAGTPLRVQNFRRDWFDRAAHAV 284

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           GL    T H LRH+ A+  +++G  ++ +QS+LGH     T   Y ++      D +  +
Sbjct: 285 GLS-GLTPHELRHTAASLAIASGASVKGVQSMLGHASAQMTLDRYGHL----FPDELDAV 339

Query: 314 YDQ 316
            D+
Sbjct: 340 ADR 342


>gi|154499119|ref|ZP_02037497.1| hypothetical protein BACCAP_03111 [Bacteroides capillosus ATCC
           29799]
 gi|150271959|gb|EDM99185.1| hypothetical protein BACCAP_03111 [Bacteroides capillosus ATCC
           29799]
          Length = 417

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/319 (12%), Positives = 100/319 (31%), Gaps = 51/319 (15%)

Query: 36  LQSYECDTR-----QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           ++ Y+ + R     Q+      +    +    + Q++  E++ F++  + +        +
Sbjct: 75  IKVYKYEVRDSTRLQYSHVYTKHVSPALGHYLLTQITTLEVKRFLNDMKKRGFSFEMRNK 134

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           +   +              ++    ++ ++     PR L++++ +   D           
Sbjct: 135 ARIVLLDLFDKAIMDDFAFKNPARGIKVVRDERVEPRVLSKEEQVDFFDTCK-------- 186

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI------------- 197
                   +  +    GLR  E  +L   ++   +  L +                    
Sbjct: 187 --GTFYEELFTVAVLTGLRPGELFALRWSDVNLKEKYLDVTRTLLYQKLEGDTGKAFHIH 244

Query: 198 --------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-------FRGIRGKPLNPGV 242
                   R V      + A++  +             PL       F      PLN  +
Sbjct: 245 PPKTATSLRRVYFDERCKLALMSQFRKKSNISLRETSSPLEGLEDLLFVTKYNTPLNSSL 304

Query: 243 FQRYIRQLRRYLGLPLST-------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           +   I+++   +    S        + H  RH++AT       D + +Q  LGH  L  T
Sbjct: 305 YSSAIQRIVDLINESRSAVDQFETFSGHCFRHTYATRAFEADVDPKVVQKQLGHATLKMT 364

Query: 296 Q-IYTNVNSKNGGDWMMEI 313
             +YT++      + + ++
Sbjct: 365 MDLYTHLFEDKKLEELTKL 383


>gi|332289031|ref|YP_004419883.1| site-specific tyrosine recombinase XerC [Gallibacterium anatis
           UMN179]
 gi|330431927|gb|AEC16986.1| site-specific tyrosine recombinase XerC [Gallibacterium anatis
           UMN179]
          Length = 310

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 55/283 (19%), Positives = 111/283 (39%), Gaps = 29/283 (10%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
            +TL  Y     +           ++ +  + ++SY ++    +    ++    ++    
Sbjct: 27  PVTLAKY-----KMTHTWLIRLAPRLRLCDLNRISYQQLLNDYASSHERQ----TVMDFH 77

Query: 93  SGIKSFLKYLKKRKITTESNILN--MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
             IK  +       +          ++        P+ L++ +  TL+  + L+      
Sbjct: 78  HQIKGAILDAVDEGLVIRDPTRKAIIKGKIPREKKPKYLSQYELQTLIHQLNLNEKLSFD 137

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----S 205
           W       ++ L+   GLR SEAL++TP++    + TL I    D       LP     S
Sbjct: 138 W-------LILLIAKTGLRFSEALAVTPKDFDFARQTLTINKTWDYKNEGGFLPTKNRSS 190

Query: 206 VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           +RK  L++  +  F     +    +P+F     + +        I +  +   +P+  T 
Sbjct: 191 IRKVQLDWQTIIQFAQLIRHCPENIPIFL-PNYEKVYNSTINDLIARYCKKAAIPI-ITV 248

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           H LRH+ A+ LL  G  + S+   LGH  ++TTQ  Y ++  +
Sbjct: 249 HGLRHTHASLLLFAGVSIASVARRLGHASITTTQKTYLHIIHE 291


>gi|291279109|ref|YP_003495944.1| phage integrase [Deferribacter desulfuricans SSM1]
 gi|290753811|dbj|BAI80188.1| phage integrase [Deferribacter desulfuricans SSM1]
          Length = 377

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 83/254 (32%), Gaps = 28/254 (11%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           +  + I+ ++  ++  FI +        +++K +   I        ++ +   +    +R
Sbjct: 117 LGNKKIKDVTLDDLDNFIEELYDFGYSPKTIKNTKICINQVFDIAMRKNLVDVNLPSRVR 176

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
            +    S        +   ++ ++        K    R  A+  +L   G+RI E L + 
Sbjct: 177 KITIPPSNIDPFTPNEVEAILSHI--------KKYYPRFYAMFSVLILTGMRIGEVLGMK 228

Query: 178 PQNIMDDQSTLRIQ-----------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
            + +  D  T  I                 IR + L P V  A+  +         +   
Sbjct: 229 WKFLNLDNGTYYIMEAMTDGILDTPKTIGSIRKIKLHPDVIDALKYHKKFY----AVKDS 284

Query: 227 LPLFRGIRGKPLN--PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
             +F    GK       + +   +     L +      H  RH++A+  L  G     + 
Sbjct: 285 EFIFNTQYGKAYTTAESIRKNVWKPTLEALNIKYRIMYH-CRHTYASMALLAGDPPVKVA 343

Query: 285 SILGHFRLSTTQIY 298
             LGH  +    +Y
Sbjct: 344 RNLGHTSVQ--MVY 355


>gi|221632161|ref|YP_002521382.1| transposase [Thermomicrobium roseum DSM 5159]
 gi|221156797|gb|ACM05924.1| transposase [Thermomicrobium roseum DSM 5159]
          Length = 316

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 62/323 (19%), Positives = 120/323 (37%), Gaps = 45/323 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           L   T   YE   R             +    + ++    ++AF S+  TQ +  +S++ 
Sbjct: 9   LRPRTWAGYESIVR-------VRIIPALGRLPLDKVEPQVLQAFASQLLTQGLSVQSVQN 61

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           +   +        K  +   +    +   + S    RAL   +   L+       +    
Sbjct: 62  THPLLHRPFADAVKWGLLGRNPCDLVDLSRASRLQLRALTAPEVARLL------ATCADD 115

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-------RIQGKG--------- 194
            +      ++ +    GLR+ E L+L   +I  ++S         R++G+G         
Sbjct: 116 PLGP----LVTVAVLSGLRLRELLALQWGDIDWERSEPSVVRSLQRVRGQGLVVVPPKTA 171

Query: 195 DKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
              R VPL P   +A+                       +F  +RG PL+P    R   +
Sbjct: 172 ASRRRVPLSPLALEALRRQRRHQVEWRLAAGPTWAEGDWVFTSVRGVPLDPAETTRRFHR 231

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN---SKN 305
           L    GLP     H LRH+ A+ LL++G   + + SILGH  +  T  +Y+ V    ++ 
Sbjct: 232 LLERAGLP-HRRFHDLRHTTASLLLADGVHPKVVASILGHSTVQVTLDVYSRVTPGLARQ 290

Query: 306 GGDWMMEIYDQ--THPSITQKDK 326
             + + ++      H ++  +++
Sbjct: 291 AAERLQQLVANSIAHSALASREE 313


>gi|89147363|gb|ABD62542.1| integrase [uncultured bacterium]
          Length = 163

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
             +    +   R+       R          A  E+     F  +     P    +R   
Sbjct: 45  LHDEDLQRGYGRVYLPYALERKY------LNAATEWAWQWVFPAHKLSTDPRSGQMRRHH 98

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
            +  + Q  +++  +  G+    + HT RHSFATHL+  G D+R++Q +LGH  +STT I
Sbjct: 99  ASEDMLQAEVQKAVKRAGIAKRVSCHTFRHSFATHLIEVGYDIRTVQELLGHKDVSTTMI 158

Query: 298 YTNV 301
           YT+V
Sbjct: 159 YTHV 162


>gi|15966853|ref|NP_387206.1| putative integrase/recombinase protein [Sinorhizobium meliloti
           1021]
 gi|15076125|emb|CAC47679.1| Putative integrase/recombinase [Sinorhizobium meliloti 1021]
          Length = 239

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 76/209 (36%), Gaps = 15/209 (7%)

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           +L +   +    +   L   +   ++         +      R+ A L  L   G R+SE
Sbjct: 15  VLTIPIKRAHIEVIHHLTNAEVDAVI-----AAPDQRTPRGRRDRAFLLFLARTGARVSE 69

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
           A+ +   ++  ++   ++   G   R   +      A      L    +  +   P+F G
Sbjct: 70  AIGVNADDLQLERPRSQVLLHGKGRRDRVIPVPQDLARALAALLRERGIANHEPRPIFIG 129

Query: 233 IRGKPLNPGVFQRYIRQLR--------RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
              + L        +R+             G     + H  RHS A  LL +G DL +IQ
Sbjct: 130 AHNERLTRFGATHIVRRAAAMAVAIRPDLAG--KPISPHIFRHSLAMKLLQSGVDLLTIQ 187

Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           + LGH +++TT  Y   + +   + + + 
Sbjct: 188 AWLGHAQVATTHRYAAADVEMMRNGLEKA 216


>gi|332202989|gb|EGJ17057.1| phage integrase family protein [Streptococcus pneumoniae GA47901]
          Length = 387

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 87/233 (37%), Gaps = 21/233 (9%)

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLP---RALNEKQALTLVDNVLLHTSHETKWI 152
           K  LKY    ++   +   ++   +K        + L+ K+    +D   L T +++ + 
Sbjct: 148 KRILKYGVAIQVIQYNPANDVIVPRKQQKEKAAVKYLDNKELKQFLDY--LDTLNQSNYE 205

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI------------RIV 200
           +  +  +   L   G RISEAL+L   +I  +   + I    ++             R +
Sbjct: 206 NLFDVVLYKTLLATGCRISEALALEWSDIDLESGVISINKTLNRYQEINSPKSSAGYRDI 265

Query: 201 PLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           P+  +    + +Y +            +  +F     K       ++ + +     G+  
Sbjct: 266 PIDKATLLLLKQYKNRQQIQSWKLGRSETVVFSVFTEKYAYACNLRKRLNKHFDAAGVT- 324

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWM 310
           + + H  RH+  T +L      + +Q  LGH  L  T+  Y + N +N    +
Sbjct: 325 NVSFHGFRHTHTTMMLYAQASPKDVQYRLGHSNLMITENTYWHTNQENAKKAV 377


>gi|212692014|ref|ZP_03300142.1| hypothetical protein BACDOR_01509 [Bacteroides dorei DSM 17855]
 gi|212665406|gb|EEB25978.1| hypothetical protein BACDOR_01509 [Bacteroides dorei DSM 17855]
          Length = 387

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 60/310 (19%), Positives = 121/310 (39%), Gaps = 38/310 (12%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           F+  K + ++L+     + L K   +          +  + +   K T + I      + 
Sbjct: 102 FDKYKLKADFLEYYR--KQLRKHDQKW-----EFVYLHFSNFVHGKCTFEEIDIDLCNKF 154

Query: 72  RAFISK----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
           R ++      RR  +I   S     S  + FLK L +  +   +    +  ++  +++  
Sbjct: 155 REYLLSAKKLRRNGRITRNSASGYWSTFRGFLKILYRNGMIKTNVNDFLEKIETEDTMKE 214

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD---- 183
           AL+ ++   L +          K    + +++   +    LRIS+ L+L  ++I+D    
Sbjct: 215 ALSVEELYQLAET-------PCKKPIVKIASLFSCM--TSLRISDILALCWEDIVDYSAG 265

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
            +    I  K     I+P+       I           +   +  +F+G     L     
Sbjct: 266 GKCVHIITQKNKTEDIIPISEEALGLI---------GYSSEKKGLVFKG-----LMRSWT 311

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           Q  +++  R  G+  + T H+ R +F T   + G D+R+IQSI+ H  ++TT  Y  V  
Sbjct: 312 QAPMKEWIRSAGITKNITFHSYRRTFTTLQGAAGTDVRTIQSIMAHKSITTTMRYMKVVD 371

Query: 304 KNGGDWMMEI 313
            N  +   +I
Sbjct: 372 SNKREASNKI 381


>gi|34540643|ref|NP_905122.1| mobilizable transposon, int protein [Porphyromonas gingivalis W83]
 gi|34396957|gb|AAQ66021.1| mobilizable transposon, int protein [Porphyromonas gingivalis W83]
          Length = 367

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/262 (18%), Positives = 94/262 (35%), Gaps = 34/262 (12%)

Query: 62  TIRQLSYTEIRAFISKR-------RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
           T   ++    + F           R  K+   S     S  +  LK   + K   E+   
Sbjct: 127 TFGDITIELCQGFREYLLNAKQLKRKGKVSTNSASGYYSTFRGLLKIAYRDKWLRENIND 186

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            +  ++        L   +       +L  T  E   +  + +++   L   GLRIS+ L
Sbjct: 187 FLDKIEAKEVKKEYLTLDEVK-----ILAQTPCEHDVL--KRASLFSCL--TGLRISDIL 237

Query: 175 SLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           +L  ++     D    +RI+ +              +A L                 +F+
Sbjct: 238 NLRWEDFTLAPDQGYCIRIRTQKTST----------EATLPISYEAYELCGEPSSGKVFK 287

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           G     L   +    +++  +  G+    T H  RHS+A   +S G D+ ++  +L H  
Sbjct: 288 G-----LQRSMINYPLKKWIKQAGIMKHITFHCFRHSYAVIQISLGTDIYTVSKMLTHKN 342

Query: 292 LSTTQIYTNVNSKNGGDWMMEI 313
           +STTQIY ++ +    +   +I
Sbjct: 343 VSTTQIYADLVNSKKRETAEKI 364


>gi|82750103|ref|YP_415844.1| integrase [Staphylococcus aureus RF122]
 gi|11094395|gb|AAG29618.1| integrase-like protein [Staphylococcus aureus]
 gi|82655634|emb|CAI80030.1| probable integrase [Staphylococcus aureus RF122]
 gi|298693728|gb|ADI96950.1| probable integrase [Staphylococcus aureus subsp. aureus ED133]
          Length = 378

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/323 (16%), Positives = 109/323 (33%), Gaps = 50/323 (15%)

Query: 25  LEIERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           L +E+   + T++  +Y+     F   +  + ++      I++++    +  I+K   +K
Sbjct: 73  LWLEQY--QNTVRESTYQRVLTLFDTAILEHFQD----VPIKKITVPYCQKVINK-WNKK 125

Query: 83  IGDRSLKRSLSGIKSF----LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             D      +  I+ +     KY    KI  ++   + +  +K  +   A  +  +   +
Sbjct: 126 YSD------IKAIRIYTSNVFKYAVSLKIIVDNPFAHTKAPRKKEAQQDASTKYYSSDEL 179

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG---- 194
              L          D    AI   L   G R  E ++LT  +I   + T+ I        
Sbjct: 180 KQFLTFVED-----DPLYYAIFRTLAFTGFRRGELMALTWNDIDFTKQTISINKTCARGA 234

Query: 195 ------------DKIRIVPLLPSVRKAILEYYDLCPFDL------NLNIQLPLFRGIRGK 236
                          R + +       +  +      +         +    +F  +R  
Sbjct: 235 NYKLVIQEPKTKSSHRTISIDDKTASVLKSWRTHQRVESLKYGHNTSDKHQHVFTTVRDN 294

Query: 237 -PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            PL P    + +  +            H  RH+  + L   G  ++ +Q  LGH  + TT
Sbjct: 295 KPLYPEHCNKALDLICEKNSF-KRIKVHGFRHTHCSLLFEAGLSIQEVQDRLGHGDIKTT 353

Query: 296 Q-IYTNVNSKNGGDWMMEIYDQT 317
             IY +V  K   D + + + + 
Sbjct: 354 MDIYAHVTEKQ-RDQVADKFAKY 375


>gi|260904385|ref|ZP_05912707.1| phage integrase family protein [Brevibacterium linens BL2]
          Length = 160

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 2/146 (1%)

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           +  CGLR  E L+L  +++      + + GKG K R VPL   V   I  Y        +
Sbjct: 1   MLWCGLRSCEVLALHVKDVDIGGRWITVTGKGAKQRRVPLDADVASVIDVYLLAERPASD 60

Query: 223 LNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
            +    + +G  RG+ L     +   R  R   G+      H LRH+F T L   G DL 
Sbjct: 61  SDQLFLVAKGTHRGQGLTAAGLRTIFRYHRDLTGVA-GGHPHALRHTFGTVLAEAGVDLA 119

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGG 307
            +Q++LGH  + TT  Y ++   +  
Sbjct: 120 VMQALLGHAHVDTTARYVHLAPVHVK 145


>gi|288918055|ref|ZP_06412413.1| integrase family protein [Frankia sp. EUN1f]
 gi|288350573|gb|EFC84792.1| integrase family protein [Frankia sp. EUN1f]
          Length = 390

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/299 (17%), Positives = 102/299 (34%), Gaps = 27/299 (9%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
                 R  S  T ++Y+ D R F  + A      + +      +   +  +I+      
Sbjct: 84  DYARASR--SAATWRAYDADLRHFRAWCAGQPVALVAVPA----TAVTVAGYIAALADDG 137

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-RNLKKSNSLPRALNEKQALTLVDNV 141
               +++R L+ I    +  +    T  + +  +   +++S  + R   +    T + + 
Sbjct: 138 YAPSTIRRRLAAISVAHQLARVTNPTAAAEVSAVWNGIRRSRGV-RPSRKAALDTSLLSR 196

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKI-- 197
           ++    +T   D R+ A+L + +   LR SE + L   +++  DD   + ++        
Sbjct: 197 VVAGLDDTHLADVRDRALLLVGFAGCLRRSELVGLDTADVVETDDGLVVTVRRSKTDQEA 256

Query: 198 --------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK------PLNPGVF 243
                             +A   +              P FRGI          L PG  
Sbjct: 257 AGAQVGLAYGSYRPTCPVRAWRGWVAAAAAAGTPLADGPAFRGINRHGQVGTVRLYPGSV 316

Query: 244 QRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            R +++     GL P     H+LR  FAT     G + RSI         ++ + Y   
Sbjct: 317 ARIVQRRVAAAGLDPADFAGHSLRSGFATAAARAGVNDRSIMRQGRWRSAASLESYVRA 375


>gi|160887647|ref|ZP_02068650.1| hypothetical protein BACUNI_00047 [Bacteroides uniformis ATCC 8492]
 gi|270294572|ref|ZP_06200774.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|156862858|gb|EDO56289.1| hypothetical protein BACUNI_00047 [Bacteroides uniformis ATCC 8492]
 gi|270276039|gb|EFA21899.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 396

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 54/286 (18%), Positives = 106/286 (37%), Gaps = 20/286 (6%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           L + T +++         F            T   L++  I +F    +++     ++ +
Sbjct: 120 LKESTKRNHLSTLSLLQQFKKDV--------TFSDLTFEFISSFEYFLQSRGYHTNTIAK 171

Query: 91  SLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
            +  +K  +     +     +        +K   +    L+ ++   L     L  +   
Sbjct: 172 HMKHLKRHINVAINKDYMEIQKYAFRKYKIKTIENKHTHLSPEELEKL---EKLSLAGRY 228

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
             +     A L+  Y  G+R S+ +SL+P NI++ +    +  K  K      LP     
Sbjct: 229 TKLQKTLDAFLFCCYA-GMRYSDFISLSPDNIVEIRQETWLIYKSIKTSTEVRLPL---Y 284

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +L               L  F  +R          + +  + R  GL    + HT RH+ 
Sbjct: 285 LLFEGKGLVILDKYRDDLQSFFHLRDN----SNVNKDLIVISRLAGLSKKISFHTARHTN 340

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           AT L+ NG ++ ++Q +LGH  + TTQ+YTNV        + + + 
Sbjct: 341 ATLLIYNGVNITTVQKLLGHKSVKTTQVYTNVMDMTIVHDLEKNHA 386


>gi|94970788|ref|YP_592836.1| phage integrase [Candidatus Koribacter versatilis Ellin345]
 gi|94552838|gb|ABF42762.1| phage integrase [Candidatus Koribacter versatilis Ellin345]
          Length = 379

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 58/307 (18%), Positives = 119/307 (38%), Gaps = 29/307 (9%)

Query: 5   NLPEIVSFELLKER-QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
             P      LL E  + +L++ +++ G+SK  L  Y  +  +          E+  + T 
Sbjct: 72  ETPAAPEQRLLPEATELFLKDKKVQ-GVSKGVLGKYTRELDRLRTHC-----ERAGVYTA 125

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           + ++   +  F +   +      +  +     ++FL+Y  + +       L    + +  
Sbjct: 126 QGITRELLTEFAATWESVYPSSSTRSKVRERCRAFLRYCYECQWIPRIPALPKIQVDEPE 185

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           ++P  L + +   L+D      S   +       A+  L+   GL I +AL L    ++ 
Sbjct: 186 TMP--LTDAEFKRLLDATYAEVSDTDQRARVH--ALFQLMRWSGLAIGDALRLERSRVIH 241

Query: 184 DQS-----TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP- 237
           D+       +  + K      VP+ P V + +L+  +  P          +F   +G+P 
Sbjct: 242 DEGKGVHRVVTARQKTGTPVSVPIPPDVAEEVLKVLNGNPR--------YVFWSGKGEPE 293

Query: 238 -LNPGVFQRYIRQLRRYLGLPLSTT--AHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            ++    + Y+R       +  +    +H LR +FA  LL  G  L  +  +LGH  + T
Sbjct: 294 SISKNWSKYYVRPCFEGAKIESNGNMMSHRLRDTFACDLLQKGVPLEEVSKLLGHESIKT 353

Query: 295 TQI-YTN 300
           T+  Y  
Sbjct: 354 TERSYAK 360


>gi|89147538|gb|ABD62629.1| integrase [uncultured bacterium]
          Length = 171

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 51/98 (52%)

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
               + +     L      ++ Q      +R   +  GV Q  +++  R  G+    + H
Sbjct: 73  EWCWQYVFPSTRLSMDPREVHRQDADTTTLRRHHIGEGVLQVAVKKAVRASGIAKPASCH 132

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T RHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 133 TFRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 170


>gi|260663670|ref|ZP_05864559.1| integrase [Lactobacillus fermentum 28-3-CHN]
 gi|260551896|gb|EEX25011.1| integrase [Lactobacillus fermentum 28-3-CHN]
          Length = 362

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 56/296 (18%), Positives = 106/296 (35%), Gaps = 23/296 (7%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E+ +    +  Q W + L  E  +  +T   Y    +    F           + I ++ 
Sbjct: 55  ELANLSFAEYYQRWYR-LYKEHSVEPITQVRYRTVGKLIADFFGQ--------KKIAEIH 105

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--NLKKSNSL 125
            ++ + FI+     K+ D ++ +  S ++  +       +  +    N++  + K+    
Sbjct: 106 RSDYQEFINWYGHDKVKD-TVIKVNSAVRLCVNSAIDDDLIIKDFTHNVQITHDKQQRPK 164

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
              LNEK+   L         H         +AIL      G+R SE  +LT ++I    
Sbjct: 165 IEYLNEKEIRQLESATANKLDHNNTSRYMILTAIL-----TGMRKSEIQALTWKDIDFLH 219

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAIL-----EYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           +T+ I    D+ +          +I              DL +N    +F    G     
Sbjct: 220 ATISITKSWDEQKKTFKPTKTESSIRTIKVNRQLLDWLEDLKVNGSTLIFMNKLGTIPTS 279

Query: 241 GVFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
               + +R +    G+       H+LRH    +LL  G D+ +I   LGH  ++ T
Sbjct: 280 TALIKVLRTIMTDCGISKQGFHFHSLRHVHVAYLLGQGVDVYAISKRLGHSDITIT 335


>gi|317481199|ref|ZP_07940273.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902634|gb|EFV24514.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 396

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 54/286 (18%), Positives = 106/286 (37%), Gaps = 20/286 (6%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           L + T +++         F            T   L++  I +F    +++     ++ +
Sbjct: 120 LKESTKRNHLSTLSLLQQFKKDV--------TFSDLTFEFISSFEYFLQSRGYHTNTIAK 171

Query: 91  SLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
            +  +K  +     +     +        +K   +    L+ ++   L     L  +   
Sbjct: 172 HMKHLKRHINVAINKDYMEIQKYAFRKYKIKTIENKHTHLSPEELEKL---EKLSLAGRY 228

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
             +     A L+  Y  G+R S+ +SL+P NI++ +    +  K  K      LP     
Sbjct: 229 TKLQKTLDAFLFCCYA-GMRYSDFISLSPDNIVEIRQETWLIYKSIKTSTEVRLPL---Y 284

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +L               L  F  +R          + +  + R  GL    + HT RH+ 
Sbjct: 285 LLFEGKGLVILDKYRDDLQSFFHLRDN----SNVNKDLIVISRLAGLSKKISFHTARHTN 340

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           AT L+ NG ++ ++Q +LGH  + TTQ+YTNV        + + + 
Sbjct: 341 ATLLIYNGVNITTVQKLLGHKSVKTTQVYTNVMDMTIVHDLEKNHA 386


>gi|294673817|ref|YP_003574433.1| site-specific recombinase, phage integrase family [Prevotella
           ruminicola 23]
 gi|294472730|gb|ADE82119.1| site-specific recombinase, phage integrase family [Prevotella
           ruminicola 23]
          Length = 409

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 94/273 (34%), Gaps = 22/273 (8%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSF 98
                 FL     Y    I +Q   +L+   I+ F       + +   ++  S   +K  
Sbjct: 140 RNYIADFLR--TNYKRNDIAMQ---ELTPDFIKEFSVYLSNERGLAHSTIWLSCMHLKGV 194

Query: 99  LKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
           +           +       + K        L E++  T++ +     +       A   
Sbjct: 195 VGRAHDNGKIQRNVFAQFHISPKCKER--TFLTEEELKTVMTHEFEDANL------AFIR 246

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
            +   +    L   +   LT  NI++      I GK    R    +P   K +     + 
Sbjct: 247 DLFVFMNFTALSFVDLKELTTDNIVEIDGDKWIIGK----RHKTDVPYQVKLLDVPLQII 302

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
               N   + P         +N     + ++ + +  G+    +AH  RH FAT  L+NG
Sbjct: 303 ERYSNFPKENPKSV---FGEVNYWSVCKKLKTVMKECGIDKPISAHCARHGFATMALTNG 359

Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
             + S+  +LGH  + TTQIY  + +K   + +
Sbjct: 360 MPIESVSRVLGHTNIVTTQIYARITTKKLDNDL 392


>gi|94442278|dbj|BAE93638.1| integron integrase [uncultured bacterium]
          Length = 162

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 52/112 (46%)

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + G G+      L      A   +     F  N     P    ++   ++    Q+ I++
Sbjct: 50  VDGYGETTPPYALARKYPSAAKSWMWQYAFPSNQRCFAPDLGTMKRHHVHQTSVQKAIKR 109

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                 +     +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 110 AVTRCNINKRVGSHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|312792344|ref|YP_004025267.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312179484|gb|ADQ39654.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 398

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 61/331 (18%), Positives = 121/331 (36%), Gaps = 51/331 (15%)

Query: 18  RQNWLQ-NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
            ++WL   L       K TL+      + +   +  +    I    ++ L    ++A  +
Sbjct: 74  LKDWLNTWLWE---YKKQTLR--PSTFQDYESLINNHIVPAIGHYKLKDLRPEHLQALYN 128

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ--A 134
            +    +   ++K     + S L    K  +        +RN+ ++ +LP+   + +   
Sbjct: 129 SKYGNGLSLSTIKHIHVILHSALDQALKNGLV-------VRNVSEATTLPKTKTKNEIRV 181

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--- 191
           LTL +      + E + +         L    G+R+ E L+L    +   + T+ I+   
Sbjct: 182 LTLQEQQRFIAALEGERLRPA----FLLALASGVRLGELLALKWDCVNLKEGTITIKRSL 237

Query: 192 ---------------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-- 228
                                     IR +P+ P + + + E+      +      L   
Sbjct: 238 RRIKTYDKNLPTKTMLAFQEPKTAAGIRTIPVPPVILEELKEHRKRQLEERLQAGSLYED 297

Query: 229 ---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
              +F    G P+ P  F R   ++     L      H LRH++AT LL      + +Q 
Sbjct: 298 NNLVFATELGTPIEPRNFLRVFYRIIEKANLD--INFHALRHTYATRLLEANEHPKVVQE 355

Query: 286 ILGHFRLSTT-QIYTNVNSKNGGDWMMEIYD 315
           +LGH  +STT  IY++V  +      M++ +
Sbjct: 356 LLGHNDISTTLNIYSHVMPEIKKAAAMKLNN 386


>gi|89894954|ref|YP_518441.1| hypothetical protein DSY2208 [Desulfitobacterium hafniense Y51]
 gi|89334402|dbj|BAE83997.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 466

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 58/292 (19%), Positives = 104/292 (35%), Gaps = 41/292 (14%)

Query: 47  LIFLAFYTEEKITIQTIRQLSYTEIRAF-----ISKRRTQ--KIGDRSLKRSLSGIKSFL 99
           L F        I  +T+  L+  +++ +     ++ R+     +  R +K   + I S  
Sbjct: 116 LNFTNHIENSFIARKTMSGLTTDDLQVYYNMKLLNGRKDGKGGLSTRFVKAIHTVISSAF 175

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
                     ++    +R   K     +  N++Q    +  +     +     D++    
Sbjct: 176 DQAVTSGHLEKNPASGVRISNKRRPKIKIWNKEQMALYLKAIKKDRLYAAFVTDSK---- 231

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG----------------DKIRIVPLL 203
                  GLR SE L+L   +I       +I+                   +  R +   
Sbjct: 232 ------SGLRKSELLALRWSDIDFSTGLTKIERGWVRSPKGTLYLSDLKSENSERTLVFS 285

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-----LNPGVFQRYIRQLRRYLGLPL 258
             + K +LE+      +     +  +  G+         +NP  F R    L     LP 
Sbjct: 286 TDLLKVLLEHKSRQDEEKKTAGKNYIDNGLVFCREDGSYINPSTFTRRHYDLTAKAKLPR 345

Query: 259 STTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
             + H LRHS +T LL +G  DL+ IQ +LGH  +STT   YT+V  +    
Sbjct: 346 -ISVHALRHSISTALLESGKVDLKQIQEMLGHKDISTTGNYYTDVLERMKQK 396


>gi|108801791|ref|YP_641988.1| phage integrase [Mycobacterium sp. MCS]
 gi|108772210|gb|ABG10932.1| phage integrase [Mycobacterium sp. MCS]
          Length = 433

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 100/267 (37%), Gaps = 28/267 (10%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
              Y E + +   +  +  T++RA++    +   G  +++ ++  ++  L+   + +   
Sbjct: 105 WPVYVEPRWSAVAVADVQTTDVRAWVQSMTSSGAGAATVENAVGILRQILEMAVEDRRIA 164

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
            +    ++  ++       L  +Q   L   V              ++ ++  L   GLR
Sbjct: 165 RNPCTGIKLPRRKRRPRGYLTHRQVEQLAVEV------------GTDATVVRFLAYTGLR 212

Query: 170 ISEALSLTPQNIMDDQSTLRIQ--------------GKGDKIRIVPLLPSVRKAILEYYD 215
             E  +L   +    +  + ++               K  + R+VP    +   +     
Sbjct: 213 WGEMAALRVGDAKMLRRRVHVRESVTEVEGQLEWSSPKSYEQRMVPFPAFLADEL-AVLM 271

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
           +     +L    P    +R       VF + +++L          T H LRH+ A+  +S
Sbjct: 272 IGKKPDDLIFAAPEGGVLRVSNWRRRVFNKAVKRLLEKDATFPVVTPHDLRHTAASLAIS 331

Query: 276 NGGDLRSIQSILGHFR-LSTTQIYTNV 301
            G +++++Q++LGH   + T   Y ++
Sbjct: 332 AGANVKAVQTMLGHASAVLTLDTYADL 358


>gi|333031241|ref|ZP_08459302.1| integrase family protein [Bacteroides coprosuis DSM 18011]
 gi|332741838|gb|EGJ72320.1| integrase family protein [Bacteroides coprosuis DSM 18011]
          Length = 406

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 54/295 (18%), Positives = 109/295 (36%), Gaps = 25/295 (8%)

Query: 33  KLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           K T Q Y    +    F+   Y    I +++I  +       ++      K+   ++ + 
Sbjct: 129 KATFQKYSVTRKHLANFIKKKYNVSDIALKSINYMFIHNFEIYMVS--HAKVSHNTMSKF 186

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           +  +K  +    K  +   +   N + ++        L E++   L+    L    E   
Sbjct: 187 MGFVKKIINIAIKSDLINHNPFANYK-IQFEKVDRGYLTEQELNLLIKKKFLIKRLEQV- 244

Query: 152 IDARNSAILYLLYGCGLR---ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
                  I       GL    + E      +   D  + +  +     + +   L  + K
Sbjct: 245 -----RDIFVFSCFTGLSYIDVKELSKDHIRISFDGNTWIMTKRSKSNVSVNVPLMDIPK 299

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            ILE Y+    +L  N  LP+        L+      Y++++    G+  + T H  RH+
Sbjct: 300 KILEKYE---GELPDNKVLPV--------LSNQKMNAYLKEIGDVCGITKNLTFHLARHT 348

Query: 269 FATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322
           FAT + L+ G  + ++  +LGH  + TTQIY  + ++     M  +  + + S  
Sbjct: 349 FATTVTLAKGIPIETVSKMLGHTNIQTTQIYARITNEKISKDMRGLSAKFNDSEK 403


>gi|310765510|gb|ADP10460.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 208

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 9/162 (5%)

Query: 170 ISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQL 227
             E  +L   +    +  L I QGKG + R +P+       +  Y   + P  L +    
Sbjct: 48  RGEVAALETYSADFSRRILTIVQGKGKQDRDIPVGERALCWLRHYLHEVRPEILAVAGCK 107

Query: 228 PLFRGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
            LF  + G   L        +    R  G+    + H  RH+ AT +L NG DLR IQ++
Sbjct: 108 ALFVAMDGVAGLTANGITHAVVPYLR-AGIDKG-SCHLFRHAMATQMLENGADLRWIQAM 165

Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           L H  + +TQIYT V+ +     +  ++  THP+  + D ++
Sbjct: 166 LSHRSVESTQIYTQVSIR----ALQAVHASTHPAEREADSEH 203


>gi|270293714|ref|ZP_06199916.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
 gi|270275181|gb|EFA21041.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
          Length = 403

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 97/267 (36%), Gaps = 24/267 (8%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSG 94
           +Y    R +L  L  + E K  +  I   Q+ +  I +++   +   ++   +   ++  
Sbjct: 135 TYTHLYRAYL-HLKEFLEYKYGVTDIPFTQVDFDFIESYVYYLKVNLQLSASTTNNTIKP 193

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           ++  +     + +  +      R  ++     + L+  +   L+   + H S        
Sbjct: 194 LRRVVMRALNKGLMYQDPFFGYR-PQRITITRKWLSMDEIERLMQVDMKHESAN------ 246

Query: 155 RNSAILYLLYGCGLRISEALSLT----PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
               +       GL   +  +L      +     Q  +  + K      +PLL    + I
Sbjct: 247 FIRDMFLFSTFTGLAYVDLKNLRHDNIVRQEDGKQWIVLNRQKTRTTSYIPLLDIPLRLI 306

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            +Y +     L+  +        R   +     Q  ++++ +   +    T H  RHS+A
Sbjct: 307 EKYRNTAFAGLDGKVF-------RLCTIENADIQ--LKKIAKAANIDKCLTYHMGRHSYA 357

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQI 297
           T  LS G  + +I   LGH  +STTQI
Sbjct: 358 TLCLSMGVPIETISQTLGHRSISTTQI 384


>gi|206563503|ref|YP_002234266.1| integrase [Burkholderia cenocepacia J2315]
 gi|198039543|emb|CAR55510.1| integrase [Burkholderia cenocepacia J2315]
          Length = 420

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 64/355 (18%), Positives = 122/355 (34%), Gaps = 59/355 (16%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
            G+  P+I +   L   + WL         +  T Q+Y  +  + L++      + ++  
Sbjct: 56  SGSAHPQIAATHDLDAVRAWLARFVD----TPATFQNYRKEAERLLLWAVIACGKPLS-- 109

Query: 62  TIRQLSYTEIRAFI-------SKRRTQK----------------IGDRSLKRSLSGIKSF 98
           ++        R F+                              +   S +++L  +   
Sbjct: 110 SLTHEDLVVYRQFLLAPAPAELWCANGGRKHPRDDPRWRPFYGPLSAASQRQALVILNVM 169

Query: 99  LKYLKKRKITTESNIL--NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
             +L +      + +     R  + +  + R L +     + D +      + +     +
Sbjct: 170 FSWLVQAGYLAGNPLALSRQRQRRPAPRVTRHLGQPLWQAVKDAIAAMPRDDARARFHAD 229

Query: 157 SA--ILYLLYGCGLRISEALSLTP------QNIM-DDQSTLRIQGKGDKIRIVPLLPSVR 207
            A  +  LLY  GLRI+EA   T       ++    ++  L + GKG + R+VP    + 
Sbjct: 230 RARWLFTLLYLGGLRITEAADTTMGRFFCRRDADGHERWWLDVTGKGGRQRLVPATDEMM 289

Query: 208 KAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLG-------- 255
             +  Y              P    L  G   KPL      R ++Q+ R+          
Sbjct: 290 TELARYRRAHGLPALPVDGEPTPLVLPVGQARKPLTRAALHRIVKQVFRHAADRLRANGE 349

Query: 256 -------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
                  +    +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + + 
Sbjct: 350 AGEHAARVLEQASAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHADD 404


>gi|75758484|ref|ZP_00738605.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|228904939|ref|ZP_04068991.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis IBL 4222]
 gi|74494011|gb|EAO57106.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|228854681|gb|EEM99287.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis IBL 4222]
          Length = 386

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 59/286 (20%), Positives = 107/286 (37%), Gaps = 37/286 (12%)

Query: 39  YECDTRQFL-------IFLAFYTEEKITIQTIRQLSYTEIRAF--------ISKRRTQKI 83
           Y  D  QF         FL    ++    Q  R L    IR +        IS +   K 
Sbjct: 87  YARDLSQFYFFIKQSEEFLQKDVKDYKFGQVWRNLRKRHIRNYQKWLSQEAISYQSKDKY 146

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN--LKKSNSLPRALNEKQALTLVDNV 141
              ++ R L  I+S+LK+L + +   +   + + +  + K +   R L+ ++   L+   
Sbjct: 147 KPSTISRKLGVIRSYLKWLYEIQYIQDPLHVEILSTTVNKQHKPKRELSYEEVKQLLHYY 206

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD----QSTLRIQGKGDKI 197
                      +  N A+L +L   GLR++E      +++  D    +  L++  KGD  
Sbjct: 207 K---------DNEINYALLSVLATTGLRVAEVAHAKWEDLEYDAIRGRYYLKVDTKGDNE 257

Query: 198 RIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           RIV +   +   I+ +      P D+       +F+     P       +YI ++ +   
Sbjct: 258 RIVSINKEIFNRIVAFRIRRRLPIDIGNGNGGTVFQTKNHTPYRENYLSQYISKIIKDTQ 317

Query: 256 LPL----STTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQ 296
           L        T H  RH +  +L          I + +GH    TT+
Sbjct: 318 LSFTVNIGITPHFFRHFYVQYLYDYKRLPPHIIAAAVGHKNDRTTK 363


>gi|329737804|gb|EGG74040.1| site-specific recombinase, phage integrase family [Staphylococcus
           epidermidis VCU028]
          Length = 349

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/318 (16%), Positives = 129/318 (40%), Gaps = 34/318 (10%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           +GNN+ +  + + +    +W++ ++ ++ LS      YE   + F  +            
Sbjct: 55  DGNNIED--NKKFVDYYDDWIK-IKNKKQLSSKQFYWYERSIKLFSEYFGENML------ 105

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            ++ ++ +E + F+++   Q   D ++++    +   ++         +    N+ N+K 
Sbjct: 106 -VKNITRSEYQKFLNQ-YAQGHTDETVRKVHGCLARCIRDALYDGYLKKDPTYNV-NIKG 162

Query: 122 SNSLP----RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           +        + +  K  L L+D          K  D  +  +LYLL   G R S+ +++T
Sbjct: 163 TEKAKDEKFKFITIKDYLNLLDYF--------KKRDEESYVLLYLLGITGARYSDVINMT 214

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
            +++      + + G   K     +  + +  +     L      ++ +L          
Sbjct: 215 YKDLNKANGIIHLPGTKTKNSKRDVEVNSKDIMHINSKLAKMPRRIDGKL--------FS 266

Query: 238 LNPGVFQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT- 295
           ++     +  R+ +  +GL  +  T ++LRH+  ++LLS G  +  I   LGH  +S T 
Sbjct: 267 VSHTSVSKAFRKAKEVIGLNDNNITPYSLRHTHTSYLLSKGIPIEYISKRLGHATISQTL 326

Query: 296 QIYTNVNSKNGGDWMMEI 313
             Y+++  ++  +    +
Sbjct: 327 DTYSHLLEEHKKEQGQRV 344


>gi|237711322|ref|ZP_04541803.1| integrase [Bacteroides sp. 9_1_42FAA]
 gi|229454017|gb|EEO59738.1| integrase [Bacteroides sp. 9_1_42FAA]
          Length = 406

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 89/256 (34%), Gaps = 19/256 (7%)

Query: 57  KITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           + T  ++ +L+   I+ F +     + + + ++  +   +K  +       +   +    
Sbjct: 152 RRTDMSMLELTPDFIKEFAAYLTAERGLKNATIWLNCMWLKGVVMRAHYNGLIPRNPFAQ 211

Query: 116 MR-NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
              +          L E +   ++     H  +       R+  I        L   +  
Sbjct: 212 FHISPNVKER--EYLTEDEIKRIM----AHEFNNPTLALVRDLFIFACF--TALSFVDMK 263

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
            LT   I++      I  K    R    +P   K +     +      L+    +F    
Sbjct: 264 ELTTDEIVEVNGEKWILSK----RHKTNVPFQVKLLDIPLQIIERYKYLSEDRLVF---- 315

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
              +N     + ++++    G+    + H  RH+F T  LS G  + S+  +LGH  + T
Sbjct: 316 -GKINYWTMCKQLKKVMAECGIEKQISYHCARHTFGTLALSKGMPIESVSRVLGHTNIVT 374

Query: 295 TQIYTNVNSKNGGDWM 310
           TQIY  + ++   + +
Sbjct: 375 TQIYAKITTQKLDNDL 390


>gi|225175140|ref|ZP_03729136.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169316|gb|EEG78114.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
          Length = 386

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 65/331 (19%), Positives = 129/331 (38%), Gaps = 51/331 (15%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
             +  + WL + +    +   T  +YE        F   + +  +    + ++    ++ 
Sbjct: 70  FTEWFEIWLASKKN--NIKPSTYDTYET-------FWRVHIKSALGHMKLDKIQPHHVQK 120

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSN-SLPRALN 130
            + +++  ++  RS++   + I + LK   K++I + +      +   K +     + L 
Sbjct: 121 LLDEKQGGELSPRSVRYIHTTINTALKSALKQRIISFNPADAELLELPKNTKIKEVKPLT 180

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-- 188
           +      +      T+ E K+  A    IL L    G+R  E L L  +NI  +Q TL  
Sbjct: 181 QDDVKAFI-----ATAKEDKFSVAY---ILSLAL--GMRKGEVLGLQWENIDFEQKTLTI 230

Query: 189 -----RIQGKG---------DKIRIVPLLPSVRKAILEYYDL-----------CPFDLNL 223
                R++GKG            R+V L   +   + E+                +    
Sbjct: 231 KNNLTRVKGKGLVLTTPKTASSNRVVLLPEKILTLLSEHGRKQAVEREIAKASGKYSEAE 290

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                +F    GKP+ P  F+R  +++    GL      H+LRHS+ T     G ++++I
Sbjct: 291 GFDNMVFTYEEGKPVCPRYFERKFKKVLEKAGLSQ-AGLHSLRHSYGTLQNEAGVNMKAI 349

Query: 284 QSILGHFRLS-TTQIYTNVNSKNGGDWMMEI 313
           Q+ LGH + S T  +YT   ++   +    +
Sbjct: 350 QATLGHSKASFTMSVYTQNTTELQREATQAV 380


>gi|223369830|gb|ACM88784.1| integrase [uncultured bacterium]
          Length = 163

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/111 (34%), Positives = 54/111 (48%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            G G+      L    R A  ++     F   +    P     R   L+    QR +++ 
Sbjct: 52  NGYGEVYLPEALSRKYRGANRDFVWQWLFPSKVISTDPRSGIERRHHLSENSLQRAVKKA 111

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                +    + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 112 LVKSEINKRGSCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|30908734|gb|AAP37599.1| IntI [uncultured bacterium]
          Length = 161

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/110 (33%), Positives = 53/110 (48%)

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G G       L      A  E+     F  +   + P         ++  + QR +    
Sbjct: 52  GHGRVELPHALARKYPNANREWRWQFVFPQDRRWRNPQTGEQGRHHVDESLVQRAVAVAV 111

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R  GL    T+HT RHSFATHLL++G D+R++Q +LGH  + TT IYT+V
Sbjct: 112 RQAGLTKRVTSHTFRHSFATHLLADGYDIRTVQELLGHSDVRTTMIYTHV 161


>gi|28558959|ref|NP_788219.1| putative integrase [Ruegeria sp. PR1b]
 gi|22726510|gb|AAN05305.1| RC232 [Ruegeria sp. PR1b]
          Length = 371

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 62/309 (20%), Positives = 102/309 (33%), Gaps = 54/309 (17%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT---------- 80
            S+ TL++Y  D   F  +      E +        S   I  +++   +          
Sbjct: 59  ASENTLKAYAKDWTHFARWCRMKGAEPLPP------SPEMIGLYLADLASGSGFSPSQAA 112

Query: 81  -QKIGDRSLKRSLSGI------KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            + +   ++ R LSG+      + F    K R I T      +  +K+ ++ P    +KQ
Sbjct: 113 SRPLSVSTIDRRLSGLTWNYAQRGFTLDRKNRHIATV-----LAGIKRKHARPPI--QKQ 165

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP--QNIMDDQSTLRIQ 191
           A+   D + +  +        R+ AIL L Y  GLR SE +SL     +  D    + I 
Sbjct: 166 AILAEDILAMVATLPYDLRGLRDRAILLLGYAGGLRRSEIVSLDVHKDDTPDSGGWIEIF 225

Query: 192 GKG--------------DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--G 235
            KG              +  R          A+ ++      D           G R   
Sbjct: 226 DKGALLTLNAKTGWREVEIGRGSKDQTCPVHALEQWLHFAKIDFGPAFVRTSRDGKRALE 285

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG------GDLRSIQSILGH 289
             L+     R I++     G+            F+ H L  G       D R +Q  LGH
Sbjct: 286 TRLSDKHVARLIKRTVLEAGIRSDLPEKDRLALFSGHSLRAGLASSAEVDERYVQKHLGH 345

Query: 290 FRLSTTQIY 298
                T+ Y
Sbjct: 346 ASAEMTRRY 354


>gi|301794240|emb|CBW36660.1| Integrase [Streptococcus pneumoniae INV104]
          Length = 387

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 87/233 (37%), Gaps = 21/233 (9%)

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLP---RALNEKQALTLVDNVLLHTSHETKWI 152
           K  LKY    ++   +   ++   +K        + L+ K+    +D   L T +++ + 
Sbjct: 148 KRILKYGVAIQVIQYNPANDVIVPRKQQKEKAAVKYLDNKELKQFLDY--LDTLNQSNYE 205

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI------------RIV 200
           +  +  +   L   G RISEAL+L   +I  +   + I    ++             R +
Sbjct: 206 NLFDVVLYKTLLATGCRISEALALEWSDIDLESGVISINKTLNRYQEINSPKSSAGYRDI 265

Query: 201 PLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
           P+  +    + +Y +            +  +F     K       ++ + +     G+  
Sbjct: 266 PIDKATLLLLKQYKNRQQIQSWKLGRSETVVFSVFTEKYAYACNLRKRLNKHFDAAGVT- 324

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWM 310
           + + H  RH+  T +L      + +Q  LGH  L  T+  Y + N +N    +
Sbjct: 325 NVSFHGFRHTHTTMMLYAQASPKDVQYRLGHSNLMITENTYWHTNQENAKKAV 377


>gi|311110137|ref|ZP_07711534.1| site-specific recombinase, phage integrase family [Lactobacillus
           gasseri MV-22]
 gi|311065291|gb|EFQ45631.1| site-specific recombinase, phage integrase family [Lactobacillus
           gasseri MV-22]
          Length = 390

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 53/312 (16%), Positives = 102/312 (32%), Gaps = 47/312 (15%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSL 88
           GL+  T  SY                +    + +  ++ TE+  +++     +K+ + ++
Sbjct: 86  GLAIKTRNSYFSTL--------DIISKDFKDKLVASVNTTELNVYLNDLLYERKLSNGTI 137

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNM-------RNLKKSNSLPRALNEKQALTLVDNV 141
           K  L  +K   +Y  +     +   L +       R  K+S      L + +  T++   
Sbjct: 138 KIYLLQLKKIFEYAIQFGYIKKDPTLKIKINYKNERAKKQSRVENWYLTDDELNTVLTYC 197

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-----------LRI 190
           L     +          +   LY  G+R+ EA +L   N+  D  T           + +
Sbjct: 198 LHKKRED-------YYHLFKWLYLTGMRVGEATALLINNVFQDPETKLWYATISGTLVHV 250

Query: 191 QGKG----------DKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPL 238
           +GKG             R + L     +   E       +  L  N            P 
Sbjct: 251 KGKGEVRQEFTKTASSHRTIALPDEAVEIYKECSKDRNKNDYLFRNKFYGSQLSNLNNPF 310

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-I 297
           +      ++R            T+H  RH+  + L   G  L  I   +GH     T+ I
Sbjct: 311 SVSTISHFLRVFVNKKKWKKQITSHIFRHTHVSKLAEEGYPLSLITDRVGHSSSEITRKI 370

Query: 298 YTNVNSKNGGDW 309
           Y ++  K   ++
Sbjct: 371 YLHITKKEHLEF 382


>gi|293366194|ref|ZP_06612879.1| integrase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|291319660|gb|EFE60021.1| integrase [Staphylococcus epidermidis M23864:W2(grey)]
          Length = 349

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 53/318 (16%), Positives = 129/318 (40%), Gaps = 34/318 (10%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           +GNN+ +  + + +    +W++ ++ ++ LS      YE   + F  +            
Sbjct: 55  DGNNIED--NKKFVDYYDDWIK-IKNKKQLSSKQFYWYERSIKLFSEYFGENML------ 105

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            ++ ++ +E + F+++   Q   D ++++    +   +K         +    N+ N+K 
Sbjct: 106 -VKNITRSEYQKFLNQ-YAQGHTDETVRKVHGCLARCIKDALYDGYLKKDPTYNV-NIKG 162

Query: 122 SNSLP----RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           +        + +  K  L L+D          K  D  +  +LYLL   G R S+ +++T
Sbjct: 163 TEKAKDEKFKFITIKDYLNLLDYF--------KKRDEESYVLLYLLGITGARYSDVINMT 214

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
            +++      + + G   K     +  + +  +     L      ++ +L          
Sbjct: 215 YKDLNKANGIIHLPGTKTKNSKRDVEVNSKDIMHINSKLAKMPRRIDGKL--------FS 266

Query: 238 LNPGVFQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT- 295
           ++     +  R+ +  +GL  +  T ++LRH+  ++LLS G  +  I   LGH  +S T 
Sbjct: 267 VSHTSVSKAFRKAKEVIGLNDNNITPYSLRHTHTSYLLSKGIPIEYISKRLGHATISQTL 326

Query: 296 QIYTNVNSKNGGDWMMEI 313
             Y+++  ++  +    +
Sbjct: 327 DTYSHLLEEHKKEQGQRV 344


>gi|254883577|ref|ZP_05256287.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|254836370|gb|EET16679.1| integrase [Bacteroides sp. 4_3_47FAA]
          Length = 390

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 57/313 (18%), Positives = 124/313 (39%), Gaps = 23/313 (7%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LPE  S +      ++  ++ ++ G+ + T ++Y               E+   +     
Sbjct: 76  LPEGDSDKHYAAFVDFFSDVCMDTGIRESTRKNYFRTLDTL--------EKYAPVAAFCD 127

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNLKKSN 123
           +  T +  +     +  +   ++ + +  +K  L+    +  +  S   + ++ ++K   
Sbjct: 128 IDKTFVCGYERFLCSMGMKANTIVKHMKHLKKALRQACLKGYSKHSIEELFSLCSVKPEK 187

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY-LLYGC--GLRISEALSLTPQN 180
           +   +L  K+ + L         +    ++ +   IL   L+ C  GLR S+  S+   N
Sbjct: 188 TFRESLTTKELVVLYQF----LENNFDTMEEKEREILSGFLFSCLTGLRYSDICSVEYSN 243

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           I   ++   +     K      +P   + +     L    L    +  LF  +    +  
Sbjct: 244 IKRIRNKRWLFLTMKKTSQKVFIP--IEQMFSGKALGIMRLFHRTRGKLF-HMPSNAICN 300

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            V +R  ++L R      + + HT RH+ AT LL +   L +I+ ILGH  + TT+IY +
Sbjct: 301 RVIKRVYKKLFRS---RKNISFHTGRHTAATLLLYHDTPLTTIKEILGHTNIRTTEIYAD 357

Query: 301 VNSKNGGDWMMEI 313
           +N     + + +I
Sbjct: 358 INEATIYNSIAKI 370


>gi|83722831|gb|ABC41687.1| integrase [uncultured bacterium]
          Length = 163

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/113 (33%), Positives = 53/113 (46%)

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R+Q +   +    L      A  ++        N     P    +R   +     QR I+
Sbjct: 50  RLQDRNGVMLPGALERKYPAAGKQWGWFWVLPSNHESTDPRSGIVRRHHIYEQSIQRAIK 109

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +      L    + HTLRHSFATHLL  G DLR++Q +LGH  +STT IYT+V
Sbjct: 110 RAVLAAKLTKPASTHTLRHSFATHLLEAGYDLRTVQELLGHADVSTTMIYTHV 162


>gi|332654353|ref|ZP_08420097.1| transposase [Ruminococcaceae bacterium D16]
 gi|332517439|gb|EGJ47044.1| transposase [Ruminococcaceae bacterium D16]
          Length = 399

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 57/321 (17%), Positives = 120/321 (37%), Gaps = 43/321 (13%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQ 81
           + + ++ G+   T+  Y+              +E      I ++  ++ +A++ K + T 
Sbjct: 90  KYVSLKTGVRHNTVAGYKTVINML-------KKESFGNLRIDKVRLSDAKAWLIKLQQTD 142

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKKSNSLPRALNEKQALTLVDN 140
             G  S+      ++   +      +  ++     + ++  ++S+      +        
Sbjct: 143 GRGYSSIHSIRGVLRPAFQMAVDDDLLRKNPFEFELASVIVNDSV----TREAITRKQQR 198

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---------- 190
            LL    E K       AI Y+L+  GLRISE   LT   I   +  +++          
Sbjct: 199 DLLKFIQEDKHFSRYYDAI-YILFHTGLRISEFCGLTVSEIEFGEMRIKVDHQLQRTAQM 257

Query: 191 ------QGKGDKIRIVPLLPSV----RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                       IR VP+  +V    R+ I          +       LF      P+  
Sbjct: 258 QYVIEEPKTDKGIRYVPMTEAVAACFRRIIANRKTPKVEPMVEGYAGFLFLDKNDMPMVA 317

Query: 241 GVFQRYIRQLRRYLG----LP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             +++Y+  + +       +     T H  RH+F +++  +G + +++Q I+GH  +S T
Sbjct: 318 LHWEKYLEHIIQKYNRIYRIQMPKVTPHVCRHTFCSNMAKSGMNPKTLQYIMGHADISVT 377

Query: 296 -QIYTNVNSKNGGDWMMEIYD 315
              YT+VN  +  +   E+Y 
Sbjct: 378 LNTYTHVNFDDAKE---EVYR 395


>gi|307257833|ref|ZP_07539590.1| Integrase [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|306863739|gb|EFM95665.1| Integrase [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
          Length = 296

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 55/307 (17%), Positives = 111/307 (36%), Gaps = 30/307 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +N+L      R L   T +SY+   RQ              I+   Q++   + A+ ++
Sbjct: 5   YKNFLH-----RYLRADTKKSYDKAIRQVCKQCE--------IEFPSQVTSDVLLAWRNR 51

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT--ESNILNMRNLKKSNSLPRALNEKQAL 135
               KI   +    L  +K   K+  +  +    E+    +  L+   +  + L + Q +
Sbjct: 52  VVGTKIKPVTWNSYLRHLKCIYKFGIEHNLLNYQENPCNKL-FLRTGKAKRKVLTKSQMM 110

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L D  L                I+       +R ++ L L   ++   +  + I  + +
Sbjct: 111 KL-DFFLQGRLPAVLSPQWFIQTIINTFRFTAIRRAQLLRLKVDDVDLSRKVIHISPEIN 169

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--------LPLFRGIRGKPL--NPGVFQR 245
           K      +P   K +L Y ++   +L  + Q        + LFR  R K L         
Sbjct: 170 KNHEYHCIPISEK-LLPYLEMLIAELRKHHQCTNSQLFNINLFRKTRYKWLITTEYQISH 228

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             R + +   +    + H  RH+  T+L+ N  +L   + +LGH  +  T  Y   + + 
Sbjct: 229 LFRVISK--NIGFQVSPHRFRHTVVTNLMRNPDNLYVAKQLLGHKDVRVTLTYIENDVEM 286

Query: 306 GGDWMME 312
             + + +
Sbjct: 287 IREKVNK 293


>gi|255692293|ref|ZP_05415968.1| putative integrase/recombinase [Bacteroides finegoldii DSM 17565]
 gi|260622026|gb|EEX44897.1| putative integrase/recombinase [Bacteroides finegoldii DSM 17565]
          Length = 341

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 98/251 (39%), Gaps = 26/251 (10%)

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNEKQALTLVDNV 141
             ++L   +S  + F  YL              +  KK  S   P      Q   + +  
Sbjct: 69  KKKTLYDKVSMFRQFCLYLCHIGKECYIP----KLPKKEYSDFTPYVFTRGQMQDIFEAC 124

Query: 142 LLHTSHETKWIDARNS--AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK-IR 198
                H         +  A+  +LY  G+RI EA+S+  +++   ++ + I+   +K  R
Sbjct: 125 DKQRMHSHNIYCNLFALPALYRILYATGIRIGEAISIRNRDVDLRRNCIIIRKTKNKMER 184

Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           ++PL  S+ K + +Y +        ++  P   L     G+PL+        +++     
Sbjct: 185 LIPLSDSLSKVLQQYLEYRNKMPLPDVDAPDKFLLISPSGRPLSSCTVLGGFKKVLEKCN 244

Query: 256 LPLSTT------AHTLRHSFATH----LLSNGGDLR----SIQSILGHFRLSTTQIYTNV 301
           +P S+        H+LRH+FA H    ++  G D+      +   LGH  L  T+ Y  +
Sbjct: 245 IPCSSNRSGGACIHSLRHTFAVHSLAKMVQEGMDIYCALPLLSVFLGHKTLKGTETYVRL 304

Query: 302 NSKNGGDWMME 312
                 D +++
Sbjct: 305 TQDMFPDILLK 315


>gi|159898089|ref|YP_001544336.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
 gi|159891128|gb|ABX04208.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 376

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 56/327 (17%), Positives = 121/327 (37%), Gaps = 44/327 (13%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT------EEKITI----- 60
            + +  + ++++    +R     T++ +  D + F  FLA         E+++ I     
Sbjct: 30  ADQISAQHSFIEYRLRQR---PQTIRRHNTDLKIFADFLASIGIVIPVDEQEVPILATEP 86

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
               ++S   +  F +    +     S+   L  ++ + +   +  + +      +  ++
Sbjct: 87  NAWAEMSVGIVTTFRTWMLNEGYALGSINIRLGTVRLYCRLAHQAGVLSLEAWSRIHTVE 146

Query: 121 ------------------------KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
                                      + P  L++ Q   L      +  + T  +  R+
Sbjct: 147 GYRRREGDGIDAQREATETPTRLSTKKAAPHILDQSQIRELKRAARNNPINRTPEVGWRD 206

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
             I+ LL   G+R  E + L  ++I   +  L  + K DK++   L+    KA+ EY  +
Sbjct: 207 YLIVCLLVDLGMRCGEVVVLKWEHIQ-GKILLVDRPKVDKVQKHRLIGDTAKALREYQKV 265

Query: 217 CPFDLNLN-IQLPLF---RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
               L L    L  F       G  ++     + I QL + +G+  +   H LRHS+AT 
Sbjct: 266 IAQPLELKTPLLAAFDHKGNHVGFGISERAIHKRIVQLGKLIGIN-NLAPHDLRHSWATR 324

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYT 299
           +      +++++   G   L+T   Y 
Sbjct: 325 VAQTNIPVQALRDAGGWTNLNTPNRYI 351


>gi|23455777|ref|NP_695147.1| integrase [Lactobacillus phage phig1e]
 gi|7444573|pir||T13182 integrase - Lactobacillus phage phi-gle
 gi|1926326|emb|CAA66758.1| integrase [Lactobacillus phage phig1e]
 gi|1926377|emb|CAA62092.1| integrase [Lactobacillus phage phig1e]
          Length = 391

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 105/303 (34%), Gaps = 46/303 (15%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           + Y    +          E       ++ +++ + + FI+    +     ++ +  + IK
Sbjct: 85  RHYRDALK--------CIEHYFPHARMKDITHDQYQLFINNF-AKSHAKSTVMQRHNYIK 135

Query: 97  SFLKYLKKRKITTESNILNMR----NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             L    +  I   +    +       ++     + ++      ++     + ++     
Sbjct: 136 KCLIEAFEEGIIKRNPAARINLTGNKNREKKEEVKFMSLDDFKKIM-----NAAYRKFDP 190

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS------- 205
           ++ +++++ L+   GLR  EA  LT   +    S++ I    D        P+       
Sbjct: 191 NSPSTSMIILMGATGLRFEEADGLTWDCVDFKNSSITINKTWDYRHKHDFGPTKNPQSMR 250

Query: 206 ----------VRKAIL-EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
                     V KA+   Y  +     + N +  +F    G PL+     + +R L    
Sbjct: 251 TIKVDSTTMRVLKALHAHYAQIKLVRHDWNKRKLVFSKSDGIPLSNNAINKMLRSLCVQN 310

Query: 255 G---------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
                     +    T H LRH+ A+ LL  G D+  +   LGH  + TT   YT+V  +
Sbjct: 311 AVVARNSSGVIQKWYTCHALRHTHASLLLYEGRDISYVSKRLGHKDIMTTYNTYTHVIQE 370

Query: 305 NGG 307
              
Sbjct: 371 MSA 373


>gi|182420569|ref|ZP_02643964.2| phage integrase [Clostridium perfringens NCTC 8239]
 gi|182379659|gb|EDT77138.1| phage integrase [Clostridium perfringens NCTC 8239]
          Length = 202

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 31/195 (15%)

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---------------- 192
            + ++ +N  +  L  G GLR+ E L+L   +I    + + I                  
Sbjct: 2   KECMNNKNGMLYILALGTGLRLGEILALKWTDINFKNNYIDINKAIKSTYKIDSKGNREF 61

Query: 193 --------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLN 239
                     + IR VPL  ++ + + ++      D + NI++      +F    G  LN
Sbjct: 62  QIIEQQPKTKNSIRTVPLNDNLIELLQQHRKKQMIDRDSNIEIYFDNNLVFSTPIGNYLN 121

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIY 298
               ++  +++     L      H LRH+FAT L  NG   +++Q+ILGH  +STT  IY
Sbjct: 122 ESNVRKTFKRILNKCNL-KELRFHDLRHTFATRLFENGVPPKTVQTILGHSDISTTLNIY 180

Query: 299 TNVNSKNGGDWMMEI 313
           T+V        + ++
Sbjct: 181 THVMKDTKDKAIDKL 195


>gi|22126113|ref|NP_669536.1| transposase [Yersinia pestis KIM 10]
 gi|108807462|ref|YP_651378.1| hypothetical protein YPA_1466 [Yersinia pestis Antiqua]
 gi|108811723|ref|YP_647490.1| hypothetical protein YPN_1560 [Yersinia pestis Nepal516]
 gi|145598335|ref|YP_001162411.1| hypothetical protein YPDSF_1038 [Yersinia pestis Pestoides F]
 gi|162420894|ref|YP_001606816.1| phage integrase family site specific recombinase [Yersinia pestis
           Angola]
 gi|165928348|ref|ZP_02224180.1| Int protein [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165939324|ref|ZP_02227872.1| Int protein [Yersinia pestis biovar Orientalis str. IP275]
 gi|166009285|ref|ZP_02230183.1| Int protein [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166210937|ref|ZP_02236972.1| Int protein [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167420286|ref|ZP_02312039.1| Int protein [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167424753|ref|ZP_02316506.1| Int protein [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167468176|ref|ZP_02332880.1| site-specific recombinase, phage integrase family protein [Yersinia
           pestis FV-1]
 gi|229894800|ref|ZP_04509980.1| putative transposase [Yersinia pestis Pestoides A]
 gi|229897505|ref|ZP_04512661.1| putative transposase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229898149|ref|ZP_04513298.1| putative transposase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229902011|ref|ZP_04517132.1| putative transposase [Yersinia pestis Nepal516]
 gi|294503853|ref|YP_003567915.1| transposase [Yersinia pestis Z176003]
 gi|21959071|gb|AAM85787.1|AE013825_14 putative transposase [Yersinia pestis KIM 10]
 gi|108775371|gb|ABG17890.1| hypothetical protein YPN_1560 [Yersinia pestis Nepal516]
 gi|108779375|gb|ABG13433.1| hypothetical protein YPA_1466 [Yersinia pestis Antiqua]
 gi|145210031|gb|ABP39438.1| hypothetical protein YPDSF_1038 [Yersinia pestis Pestoides F]
 gi|162353709|gb|ABX87657.1| site-specific recombinase, phage integrase family [Yersinia pestis
           Angola]
 gi|165912665|gb|EDR31294.1| Int protein [Yersinia pestis biovar Orientalis str. IP275]
 gi|165919631|gb|EDR36964.1| Int protein [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165991840|gb|EDR44141.1| Int protein [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166208117|gb|EDR52597.1| Int protein [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166961981|gb|EDR58002.1| Int protein [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167056635|gb|EDR66404.1| Int protein [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229680907|gb|EEO77002.1| putative transposase [Yersinia pestis Nepal516]
 gi|229688865|gb|EEO80932.1| putative transposase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229693842|gb|EEO83891.1| putative transposase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229702273|gb|EEO90292.1| putative transposase [Yersinia pestis Pestoides A]
 gi|262362028|gb|ACY58749.1| transposase [Yersinia pestis D106004]
 gi|262365835|gb|ACY62392.1| transposase [Yersinia pestis D182038]
 gi|294354312|gb|ADE64653.1| transposase [Yersinia pestis Z176003]
          Length = 412

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 86/256 (33%), Gaps = 46/256 (17%)

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +++  +    R++   LS   + +++         S  + +  LKKS S P  L   +  
Sbjct: 135 TRQLKKGRSVRTVNVYLSCFAAMMEFAVANGYIERSPFVGISPLKKSKSEPDPLTRDEYA 194

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L++               +   I  L    G+R  E  +L  ++I   + T+ I     
Sbjct: 195 RLMEV----------APSLQVKNIWKLAVSTGMRHGEICALAWEDIDLKEWTITISRNMA 244

Query: 196 KI------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL------------FR 231
            +            R + L  S  +A+ E   L      + + + L            F 
Sbjct: 245 VVHHFTPPKTESGNRTIKLTNSAIEALKEQMALTKMGKKIKVDVHLREFGKIRKDDCTFV 304

Query: 232 ---------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
                    G  G   +PGVF        +  G+     A+  RH+FA   LS G +   
Sbjct: 305 FSPRLSARNGKGGDWYSPGVFSGTWNFALKKAGI-RHRKAYETRHTFACWALSAGANPNF 363

Query: 283 IQSILGHFRLSTTQIY 298
           + + +GH       +Y
Sbjct: 364 VANQMGHTSSQ--MVY 377


>gi|121605183|ref|YP_982512.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
 gi|120594152|gb|ABM37591.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
          Length = 331

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 90/232 (38%), Gaps = 34/232 (14%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
               ++ RSL+  K  L    +  +  E+  L +++L  +N     L+  Q   +  +  
Sbjct: 126 YAPATINRSLATAKKGLALAWESNLIPENYGLRIKSLSVNNKREVFLSVDQVRQITQHCT 185

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-RIQGKGDKIRIVP 201
                          A ++     G R  E   +  ++I +++  +     K  + R++P
Sbjct: 186 EQA-----------QAAIWAALLTGARRGEIFQIRAEHIKENEIIVPASHTKTLRSRVIP 234

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           ++P++R  +              +  PL        +     +   R+ R    +     
Sbjct: 235 IIPALRPWL--------------VHFPLT-------MTIDGVKSSWRRARVKADME-HVN 272

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            H LRHS A+ L++ G DL ++  ILGH    TTQ Y ++  +   + + ++
Sbjct: 273 FHDLRHSCASILIALGVDLYTVSKILGHSNTQTTQRYAHLQVEQQREALNKL 324


>gi|312984164|ref|ZP_07791510.1| phage integrase [Lactobacillus crispatus CTV-05]
 gi|310894383|gb|EFQ43459.1| phage integrase [Lactobacillus crispatus CTV-05]
          Length = 371

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 54/277 (19%), Positives = 103/277 (37%), Gaps = 19/277 (6%)

Query: 53  YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES- 111
           Y ++      I+ +  T  + FI+          + K ++  +KS +       + + + 
Sbjct: 100 YIKQFFGTTKIKDIDRTMYQKFINWYGEDHATSSTHKMNI-LVKSCVFAAIDDGLISRNF 158

Query: 112 -NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
            N + +            LNE +   LV  +  +     +     N  IL  LY  G R+
Sbjct: 159 TNQITIHGNDDKTKKIEYLNEHEIKALVSELKTNL----QPRYTSNYLILAGLY-TGARL 213

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY-----YDLCPFDLNLNI 225
            E  +L   +I     T+ I    ++ R     P  + ++ +             L  N 
Sbjct: 214 GELSALHWSDIDFKHKTISITKSWNQDRKEMGKPKTKNSVRKIPVNDEILNIISQLKANH 273

Query: 226 QLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSI 283
              +F   R   P         +++     G+       H+LRH+   +L+S+  D+ SI
Sbjct: 274 FDFVFATSRTKMPPTACAVNDALKRNLSKAGITKQGYHFHSLRHTHVAYLISHHVDIYSI 333

Query: 284 QSILGHFRLSTT-QIYTNVNSK---NGGDWMMEIYDQ 316
              LGH ++STT  IY  +  +   N  D +++  +Q
Sbjct: 334 SRRLGHAKISTTLDIYAQLLKEYKNNQNDKIIKSLNQ 370


>gi|222080176|ref|YP_002540039.1| site-specific tyrosine recombinase XerC [Agrobacterium vitis S4]
 gi|221738821|gb|ACM39600.1| site-specific tyrosine recombinase XerC [Agrobacterium vitis S4]
          Length = 312

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 61/283 (21%), Positives = 99/283 (34%), Gaps = 19/283 (6%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEI----RAFISKRRTQKIGDRSLKRSLSGIKSF 98
            R+ L F    T   +       + + +I       I+   T     RS +R L  I  F
Sbjct: 18  LRRSLGFKLAKTSRHLAAFACYAVDHGDIHVRHETAIAWAATVSSTPRSHQRRLGEIALF 77

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
            ++L       E    +          P      +   ++D        +   +      
Sbjct: 78  ARFLHAEDRAHEVPHHHPDPGAAKRPAPYIYTSAELARMLDAAGNLRHQKPSPLRRHIYV 137

Query: 159 ILY-LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           +L  LL   GLRISEAL+L   + + D      Q K +K R+VP+  SV +A+  Y ++ 
Sbjct: 138 MLVGLLASTGLRISEALNLRLDDALPDGVLHIRQTKFNKSRLVPMHASVVEALRAYLEVR 197

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT----AHTLRHSFATHL 273
                 +  + L    +  PL     +     + R  G+    +     H LRH+FAT  
Sbjct: 198 RRFAGADDHVFLSVDAKPMPL--RTVESTFHVILRKAGVGQDRSRRPRIHDLRHTFATRA 255

Query: 274 LSNGG--------DLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           L            D  ++ + LGH  +  T  Y        GD
Sbjct: 256 LEQCAMRRDDVARDFVALSTYLGHASIRHTYWYLEATPDLMGD 298


>gi|317123190|ref|YP_004097302.1| integrase [Intrasporangium calvum DSM 43043]
 gi|315587278|gb|ADU46575.1| integrase family protein [Intrasporangium calvum DSM 43043]
          Length = 401

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 53/331 (16%), Positives = 115/331 (34%), Gaps = 63/331 (19%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT--------- 80
            L+  T+ +YE       +F+  Y       + + +L   +++ ++++ +          
Sbjct: 82  NLAPATVANYE-------LFVRHYISPAFGSKRLDRLGVRDVQVWLNELKHTCQCCAQGK 134

Query: 81  -----------------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
                            Q   + ++ ++ + ++S L    + ++ + +    +R      
Sbjct: 135 DAAREVPRCCAKGKCCGQVASEWTIHQAWTVLRSLLSSAMREELVSRNVAGLVRVPVPRA 194

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
             P      QA   ++        +   + A    +L L    GLR  E L L   ++  
Sbjct: 195 KKPAVWTVDQARQFLE----SARRDDDPLYAGYVLMLIL----GLRRGELLGLAWDDVDL 246

Query: 184 DQSTLRI-----QGKGDKIRIV----------PLLPSVRKAILEYY-----DLCPFDLNL 223
           +    RI     + KG  +R            PL      A+ +                
Sbjct: 247 ELGEARIAWQVQRVKGQLLRRKTKTTSSDAPLPLPEICVSALEQRRVVEAKWRLAAGEAW 306

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                +     G PL+P  F RY +      G+P+  + H  R + A+ L++     R  
Sbjct: 307 AGAGLVMTTRLGDPLDPRNFHRYFKARATKAGVPV-ISVHATRRTCASLLVALDVHPRVA 365

Query: 284 QSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
            +IL H +++ T  IY+ V+S +  + +  +
Sbjct: 366 MAILRHSKIAVTMDIYSQVSSTSTREALKRL 396


>gi|303235784|ref|ZP_07322391.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302484231|gb|EFL47219.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 432

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 61/313 (19%), Positives = 123/313 (39%), Gaps = 32/313 (10%)

Query: 14  LLKERQNWLQNLEIERGL--SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR--QLSYT 69
           L++E   +++      GL  +K T  +Y    +Q +     Y ++++ I  IR  QL Y 
Sbjct: 110 LIEEANLFIEEKRPCVGLTVAKSTFANYIY-AKQLI---EAYLKDRLDITDIRYSQLDYG 165

Query: 70  EIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            I       ++Q K+   +++  +  ++  +   +++K       +  +  +      R 
Sbjct: 166 FIEGLDFYLKSQRKLSLATIQIVIIFLRKLIGIGQQKKYIRIDPFVEYKA-ELPQRTRRY 224

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQ 185
           L  ++   ++   ++    E          +       GL   +   LTP++I    D  
Sbjct: 225 LTTEELQRVLQTPIIDKQFERA------RQLFLFCAFTGLARVDMQRLTPKHIHRYKDGA 278

Query: 186 STLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
             +RI + K D   I+PLLP  R+ +  Y        +      +F       L      
Sbjct: 279 LEIRIKRQKTDVEAIIPLLPIAREILDLYI------KDKQDDELIFPN-----LTVRKAS 327

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
                + +   +    T H  RH+F+T   LSNG  + ++  +LGH  + TTQIY  +  
Sbjct: 328 FACVNIGQICQIEKGLTFHMARHTFSTTICLSNGISMETLSKMLGHSDIGTTQIYGKITD 387

Query: 304 KNGGDWMMEIYDQ 316
               + M ++ ++
Sbjct: 388 LKIREDMSQLQER 400


>gi|497773|gb|AAA72427.1| integrase [Lactococcus lactis]
          Length = 379

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 99/268 (36%), Gaps = 30/268 (11%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           EK +   + +++  +I++++ +     I + + K     I+   KY +       +    
Sbjct: 105 EKFSKYKVSEVTTADIQSYLMEL---DIANSTRKNRRIYIRILFKYAENIGYIDSNPADK 161

Query: 116 MRNLKK-------SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
           +   K          +  + L++++  +++         ++   + R +  +  ++  G 
Sbjct: 162 VVLPKVRLEIETLERANEKFLSKEEMSSVLIFC------KSYKKNIRYTLAMEFIFLTGC 215

Query: 169 RISEALSLTPQNIMDDQSTLRIQGK------GDKIRIVPLLPSVRKAILEYYDLCP---- 218
           R  E  S+  Q++      LRI             R++    +V                
Sbjct: 216 RFGEFASIRYQDVDFKNRLLRIDHTLEYRVAKYDDRVIQTPKTVGSIRTISLSNRCLEII 275

Query: 219 --FDLNLNIQLPLFRGIRGKPLNPGVFQRYIR-QLRRYLGLPLSTTAHTLRHSFATHLLS 275
             F  N      +F    G      VF ++I    ++ LG       H LRHS  + L+ 
Sbjct: 276 DYFQKNCLDDKFVFVNAVGGIFRQPVFYKFICDNCQKVLGNERKYGIHLLRHSHVSLLVE 335

Query: 276 NGGDLRSIQSILGHFRLSTT-QIYTNVN 302
            G  +++I   +GH   S T +IY++++
Sbjct: 336 LGVPIKAIMERVGHRDESITLRIYSHIS 363


>gi|86148033|ref|ZP_01066335.1| site-specific recombinase, phage integrase family protein [Vibrio
           sp. MED222]
 gi|85834166|gb|EAQ52322.1| site-specific recombinase, phage integrase family protein [Vibrio
           sp. MED222]
          Length = 364

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 60/341 (17%), Positives = 111/341 (32%), Gaps = 63/341 (18%)

Query: 20  NWLQNLEIERGL--SKLTLQSYECDTRQFLIFL-----AFYTEEKITIQTIRQLSYTEIR 72
            ++  L I+ G   S  T++SY      +  FL     A+    +   +          R
Sbjct: 6   RFIVYLVIQDGRVGSMRTIKSYAASLLDYFSFLEANNIAWNESYRNDTEHFSLSPIALYR 65

Query: 73  AFISKRRTQK----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            +  K+  +     + D ++   LS +K F +Y     +        +  ++   + PR 
Sbjct: 66  NWSVKQVDENGRRTMSDSTINLRLSVLKRFYEYCHDTALIKHEPWEVLFKVRPEKT-PRF 124

Query: 129 LNEKQALTLV------------DNVLLHTSHETKWIDARN----SAILYLLYGCGLRISE 172
               +   +V               L+      K I   +      I  L+   GLR  E
Sbjct: 125 FKHTRGQKIVSSNDLVLKTFKKQPKLISLEQCKKLISVIDNLTIKLITKLILSSGLRKDE 184

Query: 173 ALSLTPQN---IMDDQSTLRI-----------QGKGDKIRIVPLLPSVRKAILEYYDLC- 217
            +S T ++           R+           + KG K R + +   +   + +Y ++  
Sbjct: 185 VISFTSEHIFKPDLSNLNRRVPINLEPQVNGQRTKGSKPRRIYISVVLMSELWDYLNIGE 244

Query: 218 -------PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG----LPLSTTAHTLR 266
                      + +    +F    G P +         +L  Y G    +    + H LR
Sbjct: 245 RVIRGKIHKTKHGHNSAFVFLNRFGDPYSEKSLNNAYTRL--YTGPFKKINFKVSPHMLR 302

Query: 267 HSF-ATHLLSN------GGDLRSIQSILGHFRLSTTQIYTN 300
           H++    L S          L  +Q  LGH  +STT IY +
Sbjct: 303 HTYATIELYSESQRVGTTKALAWVQKRLGHSSISTTSIYLH 343


>gi|333011635|gb|EGK31048.1| tyrosine recombinase xerD domain protein [Shigella flexneri K-227]
 gi|333011749|gb|EGK31158.1| tyrosine recombinase xerD domain protein [Shigella flexneri K-227]
          Length = 91

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 43/69 (62%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R   +    FQR  ++     G+    T HTLRHSFAT LL +G D+R++Q +LGH  +
Sbjct: 1   MRRHHMYNQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDV 60

Query: 293 STTQIYTNV 301
           STT IYT+V
Sbjct: 61  STTMIYTHV 69


>gi|312970927|ref|ZP_07785106.1| integrase [Escherichia coli 1827-70]
 gi|310336688|gb|EFQ01855.1| integrase [Escherichia coli 1827-70]
          Length = 349

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 93/238 (39%), Gaps = 29/238 (12%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + S++  +     ++    S + S F +  +  + +  + + NMR    +      L  +
Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q + L+         + K  D   + ++ +    G R  EA++LT   +   + T  ++ 
Sbjct: 179 QIVELL--------ADCKRQDPILALVVKICLSTGARWREAINLTRSQVTKYRITF-VRT 229

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+   + + I+       F                       FQ      + 
Sbjct: 230 KGKKNRSIPISKELYEEIMALDGFNFF-------------------TDCYFQFLSVMEKT 270

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++   +    +
Sbjct: 271 SIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHLNTAL 328


>gi|269216406|ref|ZP_06160260.1| putative phage integrase [Slackia exigua ATCC 700122]
 gi|269130665|gb|EEZ61743.1| putative phage integrase [Slackia exigua ATCC 700122]
          Length = 353

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/309 (15%), Positives = 101/309 (32%), Gaps = 36/309 (11%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
               R +   +A      I   T+  +    +  +++         ++  ++   +   L
Sbjct: 31  RSTVRDYHA-VARLIVRYIGTCTVSDMEVMAVSDWMASMVRDGYAPKTCSKAFRLLSQAL 89

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           K+   +    ++     +  ++  S   AL+  +       +L     +   +       
Sbjct: 90  KFAVGQGAIDKNPCDFCKPPRQIRSRFIALDRAE----RSRMLYLARQDDSPLGFA---- 141

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK---------------IRIVPLLP 204
           + +    G+R  E  +L   +    + TL ++                    IR +PL  
Sbjct: 142 IEIALTTGMRRGEVCALKWSDFS-SRGTLTVRRALGNAEGGFYIKEPKSLSGIRTIPLAS 200

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGI-------RGKPLNPGVFQRYIRQLRRYLGLP 257
              +A+         + N +       G          +P NP    R   Q  R  G  
Sbjct: 201 DTNEALGR-LKGAFLEANRSEGSASADGYIVGAGESGDQPYNPDRLGRDFAQFCRDNG-- 257

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQ 316
              T   LRH+FAT ++  G D+R++ S+LGH  ++ T  IY   + +        I   
Sbjct: 258 FECTFRDLRHTFATFMVGAGVDVRTVASLLGHANVAMTLNIYAEADPEAKRRAAGAIERA 317

Query: 317 THPSITQKD 325
              +  Q+ 
Sbjct: 318 FDDAAWQRK 326


>gi|89147563|gb|ABD62641.1| integrase [uncultured bacterium]
          Length = 171

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 51/98 (52%)

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
               + +     L      ++ Q      +R   +  GV Q  +++  R  G+    + H
Sbjct: 73  EWCWQYVFPSTRLSMDPREVHRQDADATTLRRHHIGEGVLQVAVKKAVRASGIAKPASCH 132

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           T RHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 133 TFRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 170


>gi|66395519|ref|YP_239890.1| ORF011 [Staphylococcus phage 42E]
 gi|62636012|gb|AAX91123.1| ORF011 [Staphylococcus phage 42E]
          Length = 345

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 112/278 (40%), Gaps = 18/278 (6%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           + T + Y+   +          + KI    + +++    + FI+    +   + +++++ 
Sbjct: 74  ENTYRHYKNALQH-------IQQHKIGKMELSKINKQVYQKFINDYSKEHAKE-TIRKTN 125

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             I+S L       +  ++    + N K         +E++    V    +   H  K  
Sbjct: 126 GAIRSALDDALYDGLIFKNPAHKV-NYKAGKP---TKSEQEKFISVTEYEILKEHVKKKR 181

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
              + A+  ++   G R+S A ++  ++I   ++T+ I  +        +  S+ K+ ++
Sbjct: 182 TRSSLALF-IMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRHI--SIAKSDMK 238

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +         ++    +F+      +        ++   R   +P+  T+H LRH+  ++
Sbjct: 239 HIMGVISSFAISYDGYIFKESGFI-ITLQAINNALKSACRVNNIPI-ITSHALRHTHCSY 296

Query: 273 LLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDW 309
           LL+ G  +  I   LGH  ++ TT +Y+++  +   + 
Sbjct: 297 LLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEE 334


>gi|86139547|ref|ZP_01058115.1| yld [Roseobacter sp. MED193]
 gi|85823730|gb|EAQ43937.1| yld [Roseobacter sp. MED193]
          Length = 376

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 62/311 (19%), Positives = 103/311 (33%), Gaps = 64/311 (20%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT---------- 80
            S+ TL++Y  D   F  +      E +        S   I  +++   +          
Sbjct: 64  ASENTLKAYAKDWANFARWCRMKGAEPLPP------SPEMIGLYLADLASGSGPFPTQSA 117

Query: 81  -QKIGDRSLKRSLSGI------KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
            + +   +++R LSG+      + F    K R I T      +  +K+ ++ P    +K+
Sbjct: 118 SRPLSVSTIERRLSGLAWNYAQRGFALDRKNRHIATV-----LAGIKRRHARPPV--QKE 170

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP--QNIMDDQSTLRIQ 191
           A+   D + +  +        R+ AIL L Y  GLR SE +SL     +  D    + I 
Sbjct: 171 AILAEDILAMVATLPYDLRGLRDRAILLLGYAGGLRRSEIVSLDVHKDDTPDSGGWIEIF 230

Query: 192 GKG--------------DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK- 236
            KG              +  R          A+ ++      D       P+F G     
Sbjct: 231 DKGALLTLNAKTGWREVEIGRGSKDQTCPVHALEQWLHFAKIDFG-----PIFVGTSRDG 285

Query: 237 ------PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG------GDLRSIQ 284
                  LN     R I++     G+            F+ H L  G       D R +Q
Sbjct: 286 KRASETRLNDKHVARLIKRTVLDAGIRSDLPEKDRLALFSGHSLRAGLASSAEVDERYVQ 345

Query: 285 SILGHFRLSTT 295
             LGH     T
Sbjct: 346 KQLGHASAEMT 356


>gi|254160925|ref|YP_003044033.1| integrase for prophage [Escherichia coli B str. REL606]
 gi|253972826|gb|ACT38497.1| integrase for prophage [Escherichia coli B str. REL606]
 gi|253977046|gb|ACT42716.1| integrase for prophage [Escherichia coli BL21(DE3)]
          Length = 314

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 93/239 (38%), Gaps = 29/239 (12%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + S++  +     ++    S + S F +  +  + +  + + NMR    +      L  +
Sbjct: 95  YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 154

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q + L+         + K  D   + ++ +    G R  EA++LT   +   + T  ++ 
Sbjct: 155 QIVELL--------ADCKRQDPILALVVKICLSTGARWREAINLTRSQVTKYRITF-VRT 205

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+   + + I+       F                       FQ      + 
Sbjct: 206 KGKKNRSIPISKELYEEIMALDGFNFF-------------------TDCYFQFLSVMEKT 246

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++   +    + 
Sbjct: 247 SIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHLETALR 305


>gi|223369780|gb|ACM88760.1| integrase [uncultured bacterium]
          Length = 163

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 64/162 (39%), Gaps = 37/162 (22%)

Query: 177 TPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY--------------------- 214
             +++  D   + +  GKG K R   L   +  AI +                       
Sbjct: 1   RVKDVDFDNGCITVHDGKGGKSRNSLLPTGLIAAIKQLIDRVLVIQQEDNAQGVGPSLPF 60

Query: 215 --------------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLS 259
                          +  F  +     P    +  + L+  V ++ ++   +  G+    
Sbjct: 61  ALDRKYPSAYRQPAWMFIFPSSTLCNHPYSGKLCRQHLHDSVARKALKAAVQKAGILNKR 120

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|291547754|emb|CBL20862.1| Site-specific recombinase XerD [Ruminococcus sp. SR1/5]
          Length = 411

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 55/336 (16%), Positives = 115/336 (34%), Gaps = 61/336 (18%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-R 79
           + + + ++  L   T  +Y       L     +  +    + I ++ Y+++  F +    
Sbjct: 77  FDRYMSLKNNLKPTTKSNY-------LYMYDRFVRDTFGKRNIAEIKYSDVVQFYNYLVE 129

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-----RNLKKSNSLPRALNEKQA 134
            Q++   +L+   + +    +   +  I  ++    +     +NL     +  AL   Q 
Sbjct: 130 KQELQINTLETVHTLLHPTFQLAVRDDIIRKNPSDGVMAELKKNLGMKTGVRHALTIPQQ 189

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-- 192
              ++ +  H       I      I  +  G G RI E L L  ++I   +  + +    
Sbjct: 190 RAFIEYIATH------PIYYHWWPIFTVFLGTGCRIGEVLGLRWEDINYKKRIICVNHNL 243

Query: 193 -------------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----P 228
                                  +R +P+L +V+ A    ++        + ++      
Sbjct: 244 TYYPVGEDRASENHISTPKTEAGMRTIPMLDAVKDAFEMIWEEQKEKGWTDAEIDGMTGF 303

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST---------------TAHTLRHSFATHL 273
           +F    G  +N     R I+++                         +AH LRH+F T L
Sbjct: 304 IFCNRYGNIMNAQSVNRAIKRISSSYNATEEVEARKEHREPVLLPNFSAHNLRHTFCTRL 363

Query: 274 LSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGD 308
                +L+ IQSI+GH  + TT  IY     +   +
Sbjct: 364 CERETNLKVIQSIMGHKDIQTTMDIYAEATEEKKQE 399


>gi|225377965|ref|ZP_03755186.1| hypothetical protein ROSEINA2194_03625 [Roseburia inulinivorans DSM
           16841]
 gi|225210216|gb|EEG92570.1| hypothetical protein ROSEINA2194_03625 [Roseburia inulinivorans DSM
           16841]
          Length = 380

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 53/331 (16%), Positives = 115/331 (34%), Gaps = 53/331 (16%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           +  L +  + WL   +  +     T ++Y     +          E++  + I  L+   
Sbjct: 65  NMTLNEWYEVWLTTCK--KNCRDTTKRTYAIQYNRL--------REELGWRKISNLNLVI 114

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
           I+   ++ +     D S     + +   L    +  +  ++  L++    +         
Sbjct: 115 IQNAFNQLK----SDSSRGDCKAVLVDILNRAMETDLINKNVALSVNTKIEGKE----QT 166

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           EK+ LT  +  LL+ S +   +         L    G+R+ E L LT   +  +   + +
Sbjct: 167 EKRVLTTEEIQLLYQSAKDSSLYP----FFILALNTGMRMGEILGLTWDCVDFENGIIHV 222

Query: 191 QGK-------------------GDKIRIVPLLPSVRKAILEYYDLC-----PFDLNLNIQ 226
           +                         R +P+   V++ + E           F      +
Sbjct: 223 EKTLCYLPNNGKAIYEFHPPKSKAGKRNIPMSKQVKEVLQEQRIWHEDMTTRFQPQQGFE 282

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP------LSTTAHTLRHSFATHLLSNGGDL 280
             +F     +P++    +  I  +   +            T H LRH+FAT+ ++ G   
Sbjct: 283 DLVFTSKTNRPIHESNIRSSIDYIVDRINAQNPTEKFERFTPHCLRHTFATNCIAKGMRP 342

Query: 281 RSIQSILGHFRLSTTQ-IYTNVNSKNGGDWM 310
           +++Q +LGH  L  T  +Y +V  +   + M
Sbjct: 343 KTLQKLLGHNSLQMTMDLYCHVLDETLKEEM 373


>gi|198276144|ref|ZP_03208675.1| hypothetical protein BACPLE_02333 [Bacteroides plebeius DSM 17135]
 gi|198270956|gb|EDY95226.1| hypothetical protein BACPLE_02333 [Bacteroides plebeius DSM 17135]
          Length = 387

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 97/251 (38%), Gaps = 12/251 (4%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT-TESNILNMRNLKK 121
              ++Y+ +  F    R +     ++ + +  +++F+    KR     E        +K 
Sbjct: 145 FEDITYSFLLEFEDFMRQKMYETNTIAKHMRQLRTFVNEAIKRGYIQPEDYPFRKYQIKT 204

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           + S    L  ++   L     L     +K +     A L+  Y  G+R S+ + L     
Sbjct: 205 TQSKHSFLLPEEIRKL---EKLELPLCSKSLIHSLKAFLFCCY-TGVRYSDFVHLN---- 256

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
             + + + I+G+   +    +  +   +I  Y       L L  +            +  
Sbjct: 257 --ENNIVTIKGEK-WLIFRTVKTNTEVSIPLYLLFQGKALRLLQEYNRNVNDFFHLKSNS 313

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              + ++++     +    + HT RH+ AT L+ NG  + ++Q +LGH  + TTQ Y+++
Sbjct: 314 SVNKDLKKIGMLAKIEKHFSFHTARHTNATLLIYNGAQITTVQKLLGHQSVKTTQGYSDI 373

Query: 302 NSKNGGDWMME 312
            S      + +
Sbjct: 374 FSGTIVKDLKK 384


>gi|325103601|ref|YP_004273255.1| integrase family protein [Pedobacter saltans DSM 12145]
 gi|324972449|gb|ADY51433.1| integrase family protein [Pedobacter saltans DSM 12145]
          Length = 389

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 54/280 (19%), Positives = 110/280 (39%), Gaps = 25/280 (8%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGI 95
           Q+Y+    +   F  F   + +      +L+  +I  F +  R  +K+   S++     I
Sbjct: 129 QTYKHKKSRLKHFEEFAGTDIL----FSELTPEKIAGFDNHLRKVKKLKHNSIQAIHVSI 184

Query: 96  KSFLKYLKKRKITTESNILN--MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
             F++   + K+  E+      ++  K+    P  L   +   L    L    H  +   
Sbjct: 185 NGFIREAVECKVNVENPYKKFKIKAYKRGKRDP--LEIDELKRL--KHLYKAQHLEEIQQ 240

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
                 L+     GLRIS+  +L  +NI  +   L I     +   V +   + K  +  
Sbjct: 241 EVLRKYLFSC-ETGLRISDNNALDYENI--ENKVLTINTVKGESFGVVVTVPLTKYAISL 297

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
            D+         + P+FR      ++  V  R ++ +     +  + T H+ R + AT+ 
Sbjct: 298 IDI------KKRRGPVFRN-----ISDQVVNRNLKVIASKAEIYRNLTFHSSRDTMATNF 346

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +  GG+  +++ +LGH  + TT IY  ++       +M +
Sbjct: 347 IDAGGNAETLKELLGHSDIKTTMIYVKISEARKKKLIMNL 386


>gi|300812763|ref|ZP_07093164.1| site-specific recombinase, phage integrase family [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|313123732|ref|YP_004033991.1| integrase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|300496256|gb|EFK31377.1| site-specific recombinase, phage integrase family [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|312280295|gb|ADQ61014.1| Integrase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 305

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 56/284 (19%), Positives = 103/284 (36%), Gaps = 32/284 (11%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           + TL  Y    R             + +  I +L Y +I    ++   +     ++    
Sbjct: 26  ERTLDKYWLSHRHLQEIA-----PNLKLVDITRLEYQQILNTFAQTHEK----ATVMDFH 76

Query: 93  SGIKSFLKYLKKRKITTESNILNM--RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
             +K+ L                +  +  + S    + LNE +   L+ ++ L T     
Sbjct: 77  HQLKAMLLDAYDEGYIQRDPTRKIVVKGKEPSEKKSKYLNEFELKLLLRHLDLSTFPNFD 136

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA- 209
           W       ++ L+   GLR SEAL LT ++I  +Q T+ +    D           + A 
Sbjct: 137 W-------MILLIAKTGLRFSEALGLTKEDIDLEQQTINVDKTWDYKSYTGSFKQTKNAS 189

Query: 210 --------ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
                         L     +L    P+F     K +        +++    L +P+  +
Sbjct: 190 SVRKVPIDWKLAMQLNQVIQDLPNGEPIFA---QKRVFNSTVNNLLKKHCEELNIPV-IS 245

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI-YTNVNSK 304
            H LRH+ A+ LL  G  + S+   LGH  ++TTQ  Y ++  +
Sbjct: 246 VHGLRHTHASLLLFAGVSIASVARRLGHADMTTTQQTYLHIIQE 289


>gi|255283266|ref|ZP_05347821.1| transposase [Bryantella formatexigens DSM 14469]
 gi|255266120|gb|EET59325.1| transposase [Bryantella formatexigens DSM 14469]
          Length = 399

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/321 (14%), Positives = 107/321 (33%), Gaps = 40/321 (12%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + + +++G    T   Y          L    +E    + IR +  ++ + +I K  +  
Sbjct: 77  RYISLKQGARYNTKAGYN-------FVLNLIKKEDFGYRQIRDIKVSDAQKWIMKLHSDG 129

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLKKSNSLPRALNEKQALTLVDNV 141
            G   +      +K   +      I   +     + ++  ++S  R     +   +  N 
Sbjct: 130 KGYSMITSVKGVVKPAFQMAYNEDIIRRNPFDFKLVDVVSNDSQKRIAMTDEQQKIWMNF 189

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR--- 198
           +       K+ D        +L G G+R+SE   LT  ++  +   + +  +  + R   
Sbjct: 190 IREDKTYCKYYDE-----FVVLLGTGMRVSEFCGLTKSDLDFENRRICVDHQLVRERGGK 244

Query: 199 -----------------IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
                               +  S++  +     +    +       +       P    
Sbjct: 245 YYVEKTKTECGIRFIPMTDDVYQSLKNILANRRKMKKEIIVDGYSGFILIDKDCHPKVAL 304

Query: 242 VFQRYIRQLRRYLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             +  +R   +              T H  RH+F T++ + G D++++Q ++G+  +  T
Sbjct: 305 HIENEMRWAMKKYKKLHPEQPFPHITPHVFRHTFCTNMANKGMDIKTLQYLMGYSDVGVT 364

Query: 296 -QIYTNVNSKNGGDWMMEIYD 315
             +YT+ +       M +I D
Sbjct: 365 LNVYTHASYDRAAQQMAKIVD 385


>gi|118465318|ref|YP_880052.1| site-specific recombinase, phage integrase family protein
           [Mycobacterium avium 104]
 gi|118166605|gb|ABK67502.1| site-specific recombinase, phage integrase family protein
           [Mycobacterium avium 104]
          Length = 160

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 9/157 (5%)

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
             ++ L    GLR++E   +  ++I   +  + + GKG +   +PL   +  A L     
Sbjct: 6   RVMILLAALGGLRVAEISRVRGEDIDIAKPAIHVVGKGKRSAWLPLHVLLVDAALTMPTR 65

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
             +        P      G  ++       I    R  G+    T H LRH + T LL +
Sbjct: 66  GWW-------FPANSRRPGDHVHSKSVSDIIGNAMRRAGV--RGTPHGLRHWYGTTLLDD 116

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           G DLR++Q +L H  LSTTQIYT V  +     +  +
Sbjct: 117 GADLRTVQELLRHRSLSTTQIYTRVTDERRAAAVGRL 153


>gi|319654649|ref|ZP_08008730.1| hypothetical protein HMPREF1013_05352 [Bacillus sp. 2_A_57_CT2]
 gi|317393715|gb|EFV74472.1| hypothetical protein HMPREF1013_05352 [Bacillus sp. 2_A_57_CT2]
          Length = 406

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 90/285 (31%), Gaps = 29/285 (10%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN--MRNL 119
            I +++    +  ++    ++    +++          KY  K K+  ++      +   
Sbjct: 110 NIDKVTPRMHQKILNDLDDKEYAKTTIEGVHVTANMIFKYAIKEKMRKDNPCTGSVIPVK 169

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K +         ++     D +        ++    +    YLL   G+R  E  +L   
Sbjct: 170 KLTVEDIENKTIEEEYLERDELFEFLEAVKRYGLEFDLERFYLLAFSGMRSGELCALKWS 229

Query: 180 NIMDDQSTLRIQG-----------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           +I  + + +RI                   K         +      +L+ +      + 
Sbjct: 230 DINWETNEIRITKTLYNPDNNMKKYELTPPKTPGSIRTFDIDDDIIDLLKVHKKRQNKIK 289

Query: 223 LNIQL---------PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
           L  +L          +F    G P         + ++ +   +    T H  RH+  + +
Sbjct: 290 LANRLKYPDYHDANFIFCRENGYPFIQKNIIVRMERILKKTSIEKHATPHIFRHTHISMM 349

Query: 274 LSNGGDLRSIQSILGHFRLSTTQI-YTNVNSKNGGDWMMEIYDQT 317
              G DL +I   +GH  + TT   YT+V  K   +    I +  
Sbjct: 350 AEAGIDLPTIMKRVGHDDMKTTMRVYTHVTDKMKKNAAERIKNHF 394


>gi|282925002|ref|ZP_06332667.1| integrase [Staphylococcus aureus A9765]
 gi|282592696|gb|EFB97703.1| integrase [Staphylococcus aureus A9765]
          Length = 345

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 112/278 (40%), Gaps = 18/278 (6%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           + T + Y    +          + KI    + +++    + FI+    +   + +++++ 
Sbjct: 74  ENTYRHYRNALQH-------IQKHKIGKMELSKINRQVYQKFINDYSKEHAKE-TIRKTN 125

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             I+S L       +  ++    + N K         +E++    V    +   H  K  
Sbjct: 126 GAIRSALDDALYDGLIFKNPAYKV-NYKAGKP---TKSEQEKFISVTEYEILKDHVRKKR 181

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
              + A+  ++   G R+S A ++  ++I   ++T+ I  +        +  S+ K+ ++
Sbjct: 182 TRSSLALF-IMICTGCRVSGARNIKTEHINQVKNTIFIDERKTDTSPRYI--SIAKSDMK 238

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +         ++    +F+      +N       ++   R   +P+  T+H LRH+  ++
Sbjct: 239 HIMDVISTFAISYDGYIFKEAGSI-INLQAINNALKSACRVNNIPI-ITSHALRHTHCSY 296

Query: 273 LLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDW 309
           LL+ G  +  I   LGH  ++ TT +Y+++  +   + 
Sbjct: 297 LLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEE 334


>gi|282879935|ref|ZP_06288659.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281306177|gb|EFA98213.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
          Length = 644

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 57/320 (17%), Positives = 124/320 (38%), Gaps = 36/320 (11%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGL--SKLTLQSYECDTRQFLIFLAFYTEEKI 58
           ME +N        LL+E + +++      GL  +K T  +Y          +  Y  E++
Sbjct: 101 MEEDN----PKGFLLEEARLFIEEKRPCVGLTIAKPTFANYIY----AAQLIKSYLRERL 152

Query: 59  TIQTIRQ--LSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
            ++ IR   L Y  I       ++++ +   +++ ++  ++  +   +++K        +
Sbjct: 153 GLEDIRYSLLDYGFIEGLDFYLKSERNLSLATIQVAVIFLRKLIGIGQQKKYIRIDPFAD 212

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
            +  ++ +   R L  ++   ++   ++    E          +       GL   +   
Sbjct: 213 YKA-EQPHRTRRYLTTEELQRILQTPIIDKQFERA------RQLFLFCAFTGLARVDMQR 265

Query: 176 LTPQNIM---DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           L  ++I+   D  + +RI + K +   I+PLLP  ++ +  Y        +      +F 
Sbjct: 266 LKLKHIIRNADGTAEIRIKRQKTNVEAIIPLLPIAKQILSLYI------KDKKADELIFP 319

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHF 290
                 L           + +   +    T H  RH+F+T   LSNG  + ++  +LGH 
Sbjct: 320 N-----LTIRKASLACVNIGQICRIDKGLTFHMARHTFSTTICLSNGISMETLSKMLGHS 374

Query: 291 RLSTTQIYTNVNSKNGGDWM 310
            + TTQIY  +      + M
Sbjct: 375 NIGTTQIYGKITDHKIQEDM 394


>gi|89147541|gb|ABD62630.1| integrase [uncultured bacterium]
          Length = 163

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/111 (33%), Positives = 52/111 (46%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +G G+      L      A   +     F        P    +R   +     Q  ++  
Sbjct: 52  RGGGEVYLPFALSRKYPNAKRAWSWQYVFPAAKLSVDPRSHEVRRHHVQEKNLQNAVKIA 111

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            R  G+    + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 112 VREAGITKPASCHTLRHSFATHLLENGSDIRTVQELLGHKDVSTTMIYTHV 162


>gi|83815713|ref|YP_444766.1| phage integrase domain/SAM domain-containing protein [Salinibacter
           ruber DSM 13855]
 gi|83757107|gb|ABC45220.1| Phage integrase, N-terminal SAM-like domain protein [Salinibacter
           ruber DSM 13855]
          Length = 687

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 57/332 (17%), Positives = 120/332 (36%), Gaps = 33/332 (9%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           + G+N+P  +  +LL+E          +  LS+ T+Q+Y+     F  F   +  + +  
Sbjct: 369 LSGDNVPAKIK-KLLEEAAA-----RRKDALSENTIQAYQHAIDHFKSFCERHGPKALPA 422

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNL 119
                 S   + A+          + ++++  S I+   +       TT  ++     +L
Sbjct: 423 ------SPETLIAYFEHLAQNGYAESTIRKRRSAIRFLHERSMNESPTTSESVRRYFDDL 476

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTS-HETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           +   ++P +    Q   ++ + L   S  E +  D R+ AILY+    GLR S  + L  
Sbjct: 477 R--KTIPESRGHGQKDPILFHHLHQMSFDEEELSDLRDRAILYIGVATGLRDSGLIGLEM 534

Query: 179 QNIMDDQSTL--RIQ-----GKGDKIRIVPLLP-SVRKAILEYYDLCPFDLNLNIQLPLF 230
           ++I + +  +  RI+     G     R+                     +        +F
Sbjct: 535 RDIFEKEGGVVYRIRDPKGEGDPGPERVSVPHEVPALTPSPNEALTAWIEAAGIESGAVF 594

Query: 231 RGIRGK-------PLNPGVFQR-YIRQLRRYLG-LPLSTTAHTLRHSFATHLLSNGGDLR 281
           R +           L+ G   +  ++   + +G  P   + H+LR  F T  + +G    
Sbjct: 595 RSVDQYGNVGGDDGLSSGSISKDIVKPWMKSIGEDPSEYSCHSLRAGFVTQAILDGITEP 654

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            I +   H  +   + Y    +      + E+
Sbjct: 655 RIAAQSRHKSIEALREYERPTNDMKNHMLKEM 686


>gi|319788796|ref|YP_004090111.1| integrase family protein [Ruminococcus albus 7]
 gi|315450663|gb|ADU24225.1| integrase family protein [Ruminococcus albus 7]
          Length = 410

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 55/309 (17%), Positives = 115/309 (37%), Gaps = 21/309 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++++ + +++N       S  T+++       F  FL     E+    ++  ++      
Sbjct: 117 VIRKYETFMRN----DQKSDGTVRTRSGRITVFFAFL-----EECKCTSLEGITPELFAR 167

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNE 131
           F+S    +    +     L  +++F  Y +     +   I  +  +   K   LP     
Sbjct: 168 FVSSLNDR-YSSQGKASILYTLRNFFSYDEFSGALSFDPIPFLTGIHSGKHERLPSFYTA 226

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI- 190
           ++   +++ V  +T             ++ L    G R S+  ++   NI     T+ I 
Sbjct: 227 EEVRRILNAVDRNTPWGKTV-----YLMMLLASVYGFRSSDIKAMVLDNINWKNRTINIT 281

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           Q K  K   +P+   +  A+L+Y      + + +      R           F   I   
Sbjct: 282 QYKTHKEISLPMTDEILFALLDYIKNVRPESDCSNVFIRLRKPYIAYSMNDHFGDKILPF 341

Query: 251 RRYLGLP---LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
               G+         H+LRHS AT+LL +G  +  I  ILGH   ++T+ Y   + ++  
Sbjct: 342 FEIAGVDTKGKHHGLHSLRHSLATNLLVSGTPINEIAVILGHTSAASTKTYVWSDIEHLR 401

Query: 308 DWMMEIYDQ 316
              +E+  +
Sbjct: 402 AAALEVPKK 410


>gi|317055533|ref|YP_004104000.1| integrase family protein [Ruminococcus albus 7]
 gi|319788838|ref|YP_004090153.1| integrase family protein [Ruminococcus albus 7]
 gi|315447802|gb|ADU21366.1| integrase family protein [Ruminococcus albus 7]
 gi|315450705|gb|ADU24267.1| integrase family protein [Ruminococcus albus 7]
          Length = 410

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 55/309 (17%), Positives = 115/309 (37%), Gaps = 21/309 (6%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           ++++ + +++N       S  T+++       F  FL     E+    ++  ++      
Sbjct: 117 VIRKYETFMRN----DQKSDGTVRTRSGRITVFFAFL-----EECKCTSLEGITPELFAR 167

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNE 131
           F+S    +    +     L  +++F  Y +     +   I  +  +   K   LP     
Sbjct: 168 FVSSLNDR-YSSQGKASILYTLRNFFSYDEFSGALSFDPIPFLTGIHSGKHERLPSFYTA 226

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI- 190
           ++   +++ V  +T             ++ L    G R S+  ++   NI     T+ I 
Sbjct: 227 EEVRRILNAVDRNTPWGKTV-----YLMMLLASVYGFRSSDIKAMVLDNINWKNRTINIT 281

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           Q K  K   +P+   +  A+L+Y      + + +      R           F   I   
Sbjct: 282 QYKTHKEISLPMTDEILFALLDYIKNVRPESDCSNVFIRLRKPYIAYSMNDHFGDKILPF 341

Query: 251 RRYLGLP---LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
               G+         H+LRHS AT+LL +G  +  I  ILGH   ++T+ Y   + ++  
Sbjct: 342 FEIAGVDTKGKHHGLHSLRHSLATNLLVSGTPINEIAVILGHTSAASTKTYVWSDIEHLR 401

Query: 308 DWMMEIYDQ 316
              +E+  +
Sbjct: 402 AAALEVPKK 410


>gi|256829123|ref|YP_003157851.1| integrase family protein [Desulfomicrobium baculatum DSM 4028]
 gi|256578299|gb|ACU89435.1| integrase family protein [Desulfomicrobium baculatum DSM 4028]
          Length = 392

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 107/275 (38%), Gaps = 31/275 (11%)

Query: 57  KITIQTIRQLSYTEIRAFISK----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
           + T   I  L    +R  ++K    R  + +  ++ K  L+ +K  L++           
Sbjct: 126 EKTPSEIVTLDLERLRRNLAKTKSPRTRKTLSAQTQKHVLALLKRMLRWAADMGHIDPPV 185

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
            L  R     N     + E Q    +  +   +       +   +A   +    G+R + 
Sbjct: 186 HLKFRMPTVDNEKTEFMTEDQLSAYLKALDEES-------NQHCAAFFRIALLTGIRRTA 238

Query: 173 ALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
            L++   ++  +   L ++G   K +K + +PL P   + +          +       +
Sbjct: 239 LLNVMWSDVDLENGFLTLRGATAKNEKTQTIPLSPGAVEVLK--------GIVRPNSPYI 290

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILG 288
           + G  G        +R  R+LR   GLP      H LRH FA+HL S+G  L  + ++L 
Sbjct: 291 WPGQNGGA--REDMRRMGRRLRDKAGLPADFRPVHGLRHHFASHLASSGASLYEVGTLLT 348

Query: 289 HFRLSTTQIYTNVNSK------NGGDWMMEIYDQT 317
           H  LS T+ Y +++ +      +  D M+++  + 
Sbjct: 349 HGDLSVTKRYAHLSDQALRRAASLADDMVKVKKKA 383


>gi|223369776|gb|ACM88758.1| integrase [uncultured bacterium]
          Length = 163

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 37/162 (22%)

Query: 177 TPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY--------------------- 214
             +++  D   + +  GKG K R   L   +  AI +                       
Sbjct: 1   RVKDVDFDNGCITVHDGKGGKSRNSLLPTGLIAAIKQLIDRVLVIQQEDNAQGVGPSLPF 60

Query: 215 --------------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLS 259
                          +  F  +     P    +    L+  V ++ ++   +  G+    
Sbjct: 61  ALNRKYPSAYRQPAWMFIFPSSTLCNHPYSGKLCRHHLHDSVARKALKAAVQKAGILNKR 120

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|168705229|ref|ZP_02737506.1| Phage integrase [Gemmata obscuriglobus UQM 2246]
          Length = 361

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 101/286 (35%), Gaps = 25/286 (8%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           ++Y  D       +  + + +I    +R L+  +I   +++  T    D   +++ + ++
Sbjct: 81  KTYSHD----KWRVDTHLKPRIGSTRLRDLTREKIVLMLAQMATDGQSDSERQKAGAVLR 136

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
           + L           + +  ++         RA+   Q +  +      + H+  +     
Sbjct: 137 NALGSAVAFSRIPVNPMAELKLPNPKRDEKRAMLPDQCVAFL--TAAESLHQLGYA---- 190

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
                L    GLR +E  +L   +   D+S +++ G  D +          K        
Sbjct: 191 ---FRLWLDAGLRPAEMFALCWDDFHPDKSEIKVSGAQDGVTNERKDTKTGKVRTIELAP 247

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRY-------IRQLRRYLGLPLSTTAHTLRHSF 269
                 L  + PL+ G    P + G               +R+   L    T +T+RH+ 
Sbjct: 248 STVAAMLAARPPLWTGKLVMPDSRGGAWWQSNFLRSPFGPIRKKADLEW-VTPYTMRHTM 306

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV---NSKNGGDWMM 311
           AT LL     L+ +   LGH  + TT + Y +V   + +     M 
Sbjct: 307 ATLLLRAHVPLKVVSERLGHADVMTTLKHYAHVMPGDQQRAAAVME 352


>gi|229012557|ref|ZP_04169731.1| Transposition regulatory protein TnpB [Bacillus mycoides DSM 2048]
 gi|228748717|gb|EEL98568.1| Transposition regulatory protein TnpB [Bacillus mycoides DSM 2048]
          Length = 703

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 54/323 (16%), Positives = 116/323 (35%), Gaps = 31/323 (9%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + Q L      S  T  +Y    +   +F AF    + T + I+ L  T I  +I     
Sbjct: 238 FKQRLLSTNKFSWQTAITY---LKGLPMFFAFIFSLEPTWEDIKFLKRTHIEKYIEYLHK 294

Query: 81  ---QKIGDRS------LKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRAL 129
                +  R+      +  SL+ ++ FL+ +++ +     E+++  +   +    L +  
Sbjct: 295 YAKNNLKKRNSHPESYVASSLNTLQKFLEDIQRYEYEMAPETHVRLLIFPEDKPKLRKK- 353

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           +  Q   + D VL         +      ++++ +  GLRISE LS+T   ++       
Sbjct: 354 SIDQIDYIPDYVLEQLFTHINDLHKDIIPVVWVAFKTGLRISEVLSITMDCLVQLNGQYS 413

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL------NIQLPLFRGIRGK----PLN 239
           I+   +K  +      +   + +   +             N +  +F   RG+    P +
Sbjct: 414 IETDIEKTYVKGHRIPIDNELADMLAVLIDKSKKLSNKENNPEGYIFVRYRGQRKGKPFD 473

Query: 240 PGVFQRYIRQLRRYLGLP------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            G  +  +  L +   +            H  RH++   +L+ G D+ ++Q ++ H    
Sbjct: 474 QGWVRTQLNVLAKRKNITDESGNLFHFKTHQFRHTYGVKMLNGGADILTVQELMAHASPE 533

Query: 294 TTQIYTNVNSKNGGDWMMEIYDQ 316
            T  Y  +           +  Q
Sbjct: 534 MTLRYAKLLDDTKRKAFESVIKQ 556


>gi|195977241|ref|YP_002122485.1| integrase [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|195973946|gb|ACG61472.1| integrase [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 377

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 107/313 (34%), Gaps = 53/313 (16%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-- 79
           +  +  +R        +YE   + + I              + +LSY  I  F    +  
Sbjct: 81  ISYISTQRN-------NYERHIKPYFIN-----------TNLNKLSYEHIFEFREYLKIK 122

Query: 80  ------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
                 +  +   ++ + +  +K       ++ +  ++ + N+R L  S    +  + ++
Sbjct: 123 PKKQNDSSTLSHNTVNKIMILLKKIFDTGVRKSLIDKNPVENLRKLPISKPTIKFWSVEE 182

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                +   L TS E  +          + +  G+R+ E L+L   +I    +T+ I   
Sbjct: 183 FN---EFRKLITSDEISYD-----LFFTIAFFTGMRLGEILALNWYDINLITNTIHITKT 234

Query: 194 ---------------GDKIRIVPLLPSVRKAILEYYDLCPFDLN---LNIQLPLFRGIRG 235
                              R + +   + + + ++ +     L     + +         
Sbjct: 235 AYFVHGTNHINSTKTRAGTRHITINHKLARMLGDWKEKQSDLLKEFTTDTESLQVIQSTP 294

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            P+   +  +  +Q+            H LRHS A+ L++ G D   ++  LGH  ++TT
Sbjct: 295 LPITKNMIDKKFKQILARNNYLKKIRIHDLRHSHASLLINQGEDYLVVKERLGHASITTT 354

Query: 296 -QIYTNVNSKNGG 307
              Y+++      
Sbjct: 355 IDTYSHLYPSKQK 367


>gi|309702146|emb|CBJ01461.1| phage integrase [Escherichia coli ETEC H10407]
          Length = 376

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 93/254 (36%), Gaps = 17/254 (6%)

Query: 47  LIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK 106
           L  L  Y       + +R ++  E+  + +  R +K+   ++ R L+ +        +  
Sbjct: 117 LSKLNLYVRPFWGKRQLRDITAGELEQYAAGLR-EKLRPSTVNRILAILSKICSLAVRAG 175

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
             T S + ++R LK++N   R L+  +    +D     T+ +T   D+     + L    
Sbjct: 176 WITHSPMSHVRYLKENNIRYRTLSATEIPRFID---AATALQTPAADS-----ILLALYT 227

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G+RI E  +L  +    D   L +             P    AI          L+    
Sbjct: 228 GMRIGEVCTLKWEYWHPDMHQLILPDTKSG--HPFTCPLAPPAIAVVQCQQDLMLSKTYI 285

Query: 227 LP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
            P L    R        F R    + R   +  +   H LR +FAT +L   GD+     
Sbjct: 286 FPRLTDNARPLAYPRATFAR----ICRDADID-NLRMHDLRRTFATRVLQATGDIAIASH 340

Query: 286 ILGHFRLSTTQIYT 299
           +L H  L+ T+ Y 
Sbjct: 341 LLNHHSLTATRRYA 354


>gi|295407330|ref|ZP_06817128.1| phage integrase [Staphylococcus aureus A8819]
 gi|297246409|ref|ZP_06930251.1| phage integrase [Staphylococcus aureus A8796]
 gi|294967775|gb|EFG43806.1| phage integrase [Staphylococcus aureus A8819]
 gi|297176680|gb|EFH35941.1| phage integrase [Staphylococcus aureus A8796]
          Length = 353

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 112/278 (40%), Gaps = 18/278 (6%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           + T + Y    +          + KI    + +++    + FI+    +   + +++++ 
Sbjct: 82  ENTYRHYRNALQH-------IQKHKIGKMELSKINRQVYQKFINDYSKEHAKE-TIRKTN 133

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             I+S L       +  ++    + N K         +E++    V    +   H  K  
Sbjct: 134 GAIRSALDDALYDGLIFKNPAYKV-NYKAGKP---TKSEQEKFISVTEYEILKDHVRKKR 189

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
              + A+  ++   G R+S A ++  ++I   ++T+ I  +        +  S+ K+ ++
Sbjct: 190 TRSSLALF-IMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYI--SIAKSDMK 246

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +         ++    +F+      +N       ++   R   +P+  T+H LRH+  ++
Sbjct: 247 HIMDVISTFAISYDGYIFKEAGSI-INLQAINNALKSACRVNNIPI-ITSHALRHTHCSY 304

Query: 273 LLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDW 309
           LL+ G  +  I   LGH  ++ TT +Y+++  +   + 
Sbjct: 305 LLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEE 342


>gi|218265272|ref|ZP_03478751.1| hypothetical protein PRABACTJOHN_04461 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221530|gb|EEC94180.1| hypothetical protein PRABACTJOHN_04461 [Parabacteroides johnsonii
           DSM 18315]
          Length = 300

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 103/277 (37%), Gaps = 27/277 (9%)

Query: 35  TLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
           T + Y+        F+   Y  E I ++ +      +   F+  R  +K    ++   + 
Sbjct: 45  TFRRYQTVCNHIREFMPHTYKREDIPLKELNLTFINDFEYFL--RTEKKCRTNTVWGYMI 102

Query: 94  GIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
            +K  +   +       +     + + +  +     L +K+  TL+D  + +T HE    
Sbjct: 103 VLKHIVSIARNDGRLPFNPFAGYINSPESVDR--GYLTQKEIQTLMDAPMKNTYHELV-- 158

Query: 153 DARNSAILYLLYGCGLRISEALSLT---PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
                 +       GL  S+  +LT    Q   D    +  + K         L  V K 
Sbjct: 159 ----RDLFVFSVFTGLAYSDVKNLTADRLQTFFDGNLWIITRRKKTNTESNIRLLDVPKR 214

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS- 268
           I+E Y     D ++               + G   + ++++ R  G  +  T H  RH+ 
Sbjct: 215 IIEKYKGLARDGHVFPVP-----------SNGSCNKILKEIGRQCGFKVRLTYHVARHTN 263

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             T LLS+G  + ++  +LGH  + TTQIY  + ++ 
Sbjct: 264 ATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQK 300


>gi|111026971|ref|YP_708949.1| XerC/XerD family integrase/recombinase [Rhodococcus jostii RHA1]
 gi|110825510|gb|ABH00791.1| probable integrase/recombinase, XerC and XerD family [Rhodococcus
           jostii RHA1]
          Length = 376

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 58/346 (16%), Positives = 114/346 (32%), Gaps = 53/346 (15%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-------IRQLSYTEI 71
             +L+ L   R  ++ T ++Y      FL +      E  T            + + ++ 
Sbjct: 22  DRYLRELRFGRDRAESTTKAYAEGMSLFLRWCDRTGREWRTAARDIGLFIVWLKYTRSDG 81

Query: 72  RAFIS---KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-- 126
            A ++    R+ +  G   + + L  ++ FL +    +    + +  +  L  +  LP  
Sbjct: 82  SAMLAGPDARQVRGAGR--INKILVAVRGFLAFAVVAREAPAAVLEQIYELADARDLPLA 139

Query: 127 ---------------RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
                           +L+E +      +     +       AR+  I+ +L   G+R  
Sbjct: 140 AQGESARLRYRLRARHSLHEPETAVDRASDEEVIALFRVCRSARDRLIVLMLSRAGVRRG 199

Query: 172 EALSLTPQNIMD--DQSTLRIQ------------------GKGDKIRIVPLLPSVRKAIL 211
           E + +   ++    D +                        K    R VP+   + +A+ 
Sbjct: 200 ELVGMRRSDLHLLPDNAVHHCPIRGAHVHVVRRENSNGAVAKSRNSRAVPIDFLLVRALD 259

Query: 212 EYYDLCPFDLNLNIQLPL----FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
            +          +    L    FR   G P+  G        L     L  S + H  RH
Sbjct: 260 LFLLERAEQPAADECDFLLVNLFREPLGAPMTVGAINELFEALCVRAQLARSISPHQCRH 319

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            FA++L  +G  L  IQ +LGH   S+   Y + +     D +  +
Sbjct: 320 GFASNLADSGALLDEIQGLLGHASASSATPYLHPSPDRLRDAVERV 365


>gi|86130576|ref|ZP_01049176.1| phage integrase family protein [Dokdonia donghaensis MED134]
 gi|85819251|gb|EAQ40410.1| phage integrase family protein [Dokdonia donghaensis MED134]
          Length = 417

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/297 (17%), Positives = 114/297 (38%), Gaps = 30/297 (10%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT---EIRAFISKR---- 78
           +IE  L+K T++++         FL     +K T   +++L Y    +   +++      
Sbjct: 120 KIENTLAKGTIRNFGVTENYLNKFLNKV--KKTTDIYLKELDYKFLCDFENYLANYWPVG 177

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             + +   ++ + +  ++  +      +       +  +           L+E + L + 
Sbjct: 178 HPKALSQNTIMKHIQRLRKMVTLAYHMEWIPRDPFVRWK-PVYEKKQREFLSENELLNM- 235

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKG 194
           +          +  D     +       G+   + ++LT +N    +         + K 
Sbjct: 236 ETFEFSIERLERVRD-----LFVFSCYTGISYVDIMNLTEENLVLGMDGGNWIYTKRQKT 290

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
                VPLL    + I +Y      ++     LP+    +           Y++++  ++
Sbjct: 291 KSAVKVPLLGKAEEIISKYERHPMTEI-TGTLLPVITNEK--------LNVYLKEVAHFV 341

Query: 255 GLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           G+  + T H  RH+FAT + LSNG  + ++  +LGH +++TTQIY  V      + M
Sbjct: 342 GIKKNLTFHMARHTFATTITLSNGVPIETVSKLLGHSKIATTQIYARVLEHKVSNDM 398


>gi|326406231|gb|ADZ63302.1| integrase [Lactococcus lactis subsp. lactis CV56]
          Length = 379

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 99/268 (36%), Gaps = 30/268 (11%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           EK +   + +++  +I++++ +     I + + K     I+   KY +       +    
Sbjct: 105 EKFSKYKVSEVTTADIQSYLMEL---DIANSTRKNRRIYIRILFKYAENIGYIDSNPADK 161

Query: 116 MRNLKK-------SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
           +   K          +  + L++++  +++         ++   + R +  +  ++  G 
Sbjct: 162 VVLPKVRLEIETLERANEKFLSKEEMSSVLIFC------KSYKKNIRYTLAMEFIFLTGC 215

Query: 169 RISEALSLTPQNIMDDQSTLRIQGK------GDKIRIVPLLPSVRKAILEYYDLCP---- 218
           R  E  S+  Q++      LRI             R++    +V                
Sbjct: 216 RFGEFASIRYQDVDFKNKLLRIDHTLEYRVAKYDDRVIQTPKTVGSIRTISLSNRCLEII 275

Query: 219 --FDLNLNIQLPLFRGIRGKPLNPGVFQRYIR-QLRRYLGLPLSTTAHTLRHSFATHLLS 275
             F  N      +F    G      VF ++I    ++ LG       H LRHS  + L+ 
Sbjct: 276 DYFQKNCLDDKFVFVNAVGGIFRQPVFYKFICDNCQKVLGNERKYGIHLLRHSHVSLLVE 335

Query: 276 NGGDLRSIQSILGHFRLSTT-QIYTNVN 302
            G  +++I   +GH   S T +IY++++
Sbjct: 336 LGVPIKAIMERVGHRDESITLRIYSHIS 363


>gi|227461209|gb|ACP39549.1| putative integron integrase [uncultured microorganism]
          Length = 286

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 59/285 (20%), Positives = 98/285 (34%), Gaps = 70/285 (24%)

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI---------------------- 113
            K RT+ +  R+ +  L  I+ ++ +  +R                              
Sbjct: 13  EKMRTRHLAYRTEQSYLYWIRGYVAFHHRRHPRELGAPGVEQFLTHLLYRQVLGLDLPWL 72

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
            N+    +S  LP  L   +  +++  V          +      +L            A
Sbjct: 73  ENVTRAPRSRRLPVVLGRSEVRSILAFVEGTPGLVAGLLYGGGLRLLE-----------A 121

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC---PFDLNLNIQLP-- 228
           L L  ++++ ++STL I+        V +LP      L  +       FDL      P  
Sbjct: 122 LRLRVKDVVFERSTLVIRDAKGGKDRVTILPDAMAMPLRAHVARLHIWFDLERQRGAPGV 181

Query: 229 ---------------------LFRGIRGKP-----------LNPGVFQRYIRQLRRYLGL 256
                                +F                  L+    QR ++Q  R  G+
Sbjct: 182 SVPGALARKYRGVATQWGWQYIFPSRNLCRDPYSGQWIRHHLHEQTVQRAVKQAVRRAGI 241

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               + HT RH FATHLL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 242 QQPASCHTFRHCFATHLLEDGYDIRTVQELLGHSDVKTTMIYTHV 286


>gi|16263335|ref|NP_436128.1| integrase/recombinase [Sinorhizobium meliloti 1021]
 gi|16263635|ref|NP_436428.1| Integrase/recombinase [Sinorhizobium meliloti 1021]
 gi|14524016|gb|AAK65540.1| integrase/recombinase [Sinorhizobium meliloti 1021]
 gi|14524345|gb|AAK65840.1| Integrase/recombinase [Sinorhizobium meliloti 1021]
          Length = 409

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 71/318 (22%), Positives = 121/318 (38%), Gaps = 27/318 (8%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           L     + LL + Q+WL    + RGL++ T+  +     + L  L   T           
Sbjct: 110 LKVASPYPLLDDYQSWL---RVHRGLAERTIARHLRHLHKLLPELGTPTL---------D 157

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-- 123
                IR  + +   ++ G   L+   S ++S+L++L    +   +    +  + +    
Sbjct: 158 YDAALIRN-VVREWRERTGPADLRTITSALRSYLRFLAGVGLCRPNLDHAIPPVLQWRLS 216

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
           SLPR L       ++      +  +      R+ AIL LL   GLR  +   L   +I  
Sbjct: 217 SLPRYLAAADVERVI-----ASCDQLTRGRLRDRAILLLLARLGLRAGDVAGLRLSDIEW 271

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
               LR+ GK  +   +PL   V  A+L Y +     ++                     
Sbjct: 272 TSGMLRLSGKARRQVRLPLPQDVGDALLAYIEQERPRMHQEAVFLTMIAPYRSFAQSSHV 331

Query: 244 QRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              +    +  G+  P ST A  LRHS AT +L +G  L ++ ++L H  L  T  Y  V
Sbjct: 332 STIVALALKRAGISDPPSTGACLLRHSAATSMLRSGATLEAVGTVLRHRSLDMTAHYAKV 391

Query: 302 NSKNGGDWMMEIYDQTHP 319
           ++      M+E   Q  P
Sbjct: 392 DA-----AMLEQVAQPWP 404



 Score = 37.3 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 54/162 (33%), Gaps = 27/162 (16%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L      +  +L  +R  + LT++ Y    R F  +L           +I  +    +R 
Sbjct: 16  LSSWIDQFADDLAAQR-YTPLTIEGYTASARHFAAWLGCAGI------SIDLIDDDVVRR 68

Query: 74  FISKRRTQ-------KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL------- 119
           F   R          +I  +  +R+    + F+ +L+K  +      L + +        
Sbjct: 69  FAEHRCRCPGRRQWLRISPKYSRRA----RRFVVFLQKEGVAR--PPLKVASPYPLLDDY 122

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
           +    + R L E+     + ++              ++A++ 
Sbjct: 123 QSWLRVHRGLAERTIARHLRHLHKLLPELGTPTLDYDAALIR 164


>gi|291514108|emb|CBK63318.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 409

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 53/288 (18%), Positives = 110/288 (38%), Gaps = 22/288 (7%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLK 89
            + +T++ YE   R     +     ++     + +++   +RAF    +T+      ++ 
Sbjct: 131 YALITVRRYESCRRYLAELIRQRYGKE--DLPLTEVNGELVRAFAFYLKTEKGCQQNTVI 188

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           R +  +K             +   L +R  +K   +   L   +  T+      H     
Sbjct: 189 RYMKCLKKITNLACANDWMAKDPFLGIRFHEKEV-VREFLTMDELQTIY-----HKEFPL 242

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRIVPLLP--SV 206
           + +       ++  +  GL   +   L P++I+ D+   L I+    K + +  +P   +
Sbjct: 243 ERLTLVRDVFIFAAF-TGLAFIDVQQLAPEHIVRDNNGNLWIRKPRQKTKNMCNIPLLDI 301

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            + IL  Y   P      + LP+    +           Y++++     +  + T H  R
Sbjct: 302 PQEILRKYADHPTCRKKGVLLPVPCNQKM--------NSYLKEIADICMIRKNLTTHCAR 353

Query: 267 HSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           HS+AT   L NG  L ++  +LGH  +  TQ Y  V   +    MM++
Sbjct: 354 HSYATSVCLVNGVSLENVAKMLGHSNIKMTQHYARVLDSSILRDMMQV 401


>gi|283469696|emb|CAQ48907.1| integrase [Staphylococcus aureus subsp. aureus ST398]
          Length = 378

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/323 (16%), Positives = 110/323 (34%), Gaps = 50/323 (15%)

Query: 25  LEIERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           L +E+   + T++  +Y+     F   +  + ++      I++++    +  I+K   +K
Sbjct: 73  LWLEQY--QNTVRESTYQRVLTLFDTAILEHFQD----VPIKKITVPYCQKVINK-WNKK 125

Query: 83  IGDRSLKRSLSGIKSF----LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
             D      +  I+ +     KY    KI  ++   + +  +K  +   A  +  +   +
Sbjct: 126 YSD------IKAIRIYTSNVFKYAVSLKIIVDNPFAHTKAPRKKEAQQDASTKYYSSDEL 179

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG---- 194
              L          D    AI   L   G R  E ++LT ++I   + T+ I        
Sbjct: 180 KQFLTFVED-----DPLYYAIFRTLAFTGFRRGELMALTWKDIDFTKQTISINKTCARGA 234

Query: 195 ------------DKIRIVPLLPSVRKAILEYYDLCPFDL------NLNIQLPLFRGIRGK 236
                          R + +       +  +      +         +    +F  +R  
Sbjct: 235 NYKLIIQEPKTKSSHRTISIDDKTASVLKSWRTHQRVESLKYGHNTSDKHQHVFTTVRDN 294

Query: 237 -PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            PL P    + +  +            H  RH+  + L   G  ++ +Q  LGH  + TT
Sbjct: 295 KPLYPEHCNKALDLICEKNSF-KRIKVHGFRHTHCSLLFEAGLSIQEVQDRLGHGDIKTT 353

Query: 296 Q-IYTNVNSKNGGDWMMEIYDQT 317
             IY +V  K   D + + + + 
Sbjct: 354 MDIYAHVTEKQ-RDQVADKFAKY 375


>gi|282863562|ref|ZP_06272620.1| integrase family protein [Streptomyces sp. ACTE]
 gi|282561263|gb|EFB66807.1| integrase family protein [Streptomyces sp. ACTE]
          Length = 400

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 86/260 (33%), Gaps = 29/260 (11%)

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTE-SN---------ILNMRNL----------KK 121
               R++K +L+ I  F ++          +           L  R+           + 
Sbjct: 131 GYAPRTIKHALTVISGFYEFHAHHGRGPVVNPVPHSAQRRRALGHRSPLEPTPVVGRARL 190

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              +P          L D +    + +       + A+L +    G R  E L +T  +I
Sbjct: 191 RQRVPDRSPRSIPDRLWDELFTAMNCDR------DRALLEIFVSSGARAKELLGITVGDI 244

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
                 + +  KG + R    +       L  Y            L   R    + L   
Sbjct: 245 DWSGQRIYVITKGTRAREAVPVSPQGLFRLALYLDAAGTPADGGPLWRARRGPDRSLTYW 304

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTN 300
             +R +++    LG   + + H LRH+ A  + + G   L  +Q+I  H  + TT  Y  
Sbjct: 305 AMRRVMQRANTLLG--TNWSLHDLRHTAAYRMANGGKLTLPEVQTITRHADIQTTNRYLA 362

Query: 301 VNSKNGGDWMMEIYDQTHPS 320
           V+ +   D + E Y    P+
Sbjct: 363 VHIEELFDKLTEHYATPRPA 382


>gi|210612450|ref|ZP_03289308.1| hypothetical protein CLONEX_01509 [Clostridium nexile DSM 1787]
 gi|210151558|gb|EEA82565.1| hypothetical protein CLONEX_01509 [Clostridium nexile DSM 1787]
          Length = 415

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 58/324 (17%), Positives = 118/324 (36%), Gaps = 49/324 (15%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-Q 81
           + + ++ G+   T+  Y+              +E      I ++  ++ +A++ K +   
Sbjct: 106 KYVSLKTGVRHNTVAGYKTVINML-------KKESFGNLRIDKVRLSDAKAWLIKLQQID 158

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKKSNSLPRALNEKQALTLVDN 140
             G  S+      ++   +      +  ++     + ++  ++S+      +        
Sbjct: 159 GRGYSSIHSIRGVLRPAFQMAVDDDLLRKNPFEFELASVIVNDSV----TREAITRKQQR 214

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---------- 190
            LL    E K       AI Y+L+  GLRISE   LT   I   +  +++          
Sbjct: 215 DLLKFIQEDKHFSRYYDAI-YILFHTGLRISEFCGLTVSEIEFGEMRIKVDHQLQRTAQM 273

Query: 191 ------QGKGDKIRIVPLLPSV----RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                       IR VP+  +V    R+ I          +       LF      P+  
Sbjct: 274 QYVIEEPKTDKGIRYVPMTEAVAACFRRIITNRKTPKVEPMVEGYAGFLFLDKNDMPMVA 333

Query: 241 --------GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                    + Q+Y +  R  +      T H  RH+F +++  +G + +++Q I+GH  +
Sbjct: 334 LHWEKYLEHIIQKYNKIYRIQM---PKVTPHVCRHTFCSNMAKSGMNPKTLQYIMGHADI 390

Query: 293 STT-QIYTNVNSKNGGDWMMEIYD 315
           S T   YT+VN  +  +   E+Y 
Sbjct: 391 SVTLNTYTHVNFDDAKE---EVYR 411


>gi|239937597|gb|ACS35604.1| putative IntI2-like integrase [uncultured bacterium]
          Length = 163

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 66/162 (40%), Gaps = 37/162 (22%)

Query: 177 TPQNIMDDQSTLRIQ-GKGDKIRIVPLLP---SVRKAILEYYDLCPFDLNLNIQLP---- 228
             +++  D   + +  GKG K R   L        K ++E   L   D NL    P    
Sbjct: 1   RVKDVDFDNGCITVHDGKGGKSRSSLLPTRLIPAIKQLIEQARLIQQDDNLQGVGPSLPF 60

Query: 229 -----------------LFRG-----------IRGKPLNPGVFQRYIRQLRRYLGL-PLS 259
                            +F             +    L+  V ++ ++   +  G+    
Sbjct: 61  ALDRKYPSAYRQAAWMFVFPSSTLCNHPYNGKLCRHHLHDSVARKALKAAVQKAGIVSKR 120

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|224024656|ref|ZP_03643022.1| hypothetical protein BACCOPRO_01384 [Bacteroides coprophilus DSM
           18228]
 gi|224017878|gb|EEF75890.1| hypothetical protein BACCOPRO_01384 [Bacteroides coprophilus DSM
           18228]
          Length = 416

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 56/275 (20%), Positives = 106/275 (38%), Gaps = 25/275 (9%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSF 98
           Y+   + +L  L    +E I    I +   +  +AF+  +R +    + + + L  +   
Sbjct: 134 YQKYLKDYLTSL---GKEDIEFSDITEDFGSSYKAFM--KRNKNFSAQQINKCLCWLSKL 188

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           +      +I   + + +M   KK       ++  +   +++  +L    E         A
Sbjct: 189 VYLAVDYEILRANPLEDMEYEKKPALKHMHISRAELKAILETPMLDPLQELGR-----RA 243

Query: 159 ILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
            L+  +  GL   + + L P +I    D +  +RI  K   +     L  + + IL+ Y+
Sbjct: 244 FLFSTF-TGLTYVDIMLLHPHHIGTTADGRRYIRINRKKTNVEAFIPLHPIAEQILDLYN 302

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
                   +   P+F        +       I +L   +G   + + H  RHSF T L+S
Sbjct: 303 T------TDDTKPVFPLP-----SRDEMWFEIHELGVAIGRKENLSYHQSRHSFGTFLIS 351

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            G  + SI  ++GH  + TTQ Y  V  K     M
Sbjct: 352 EGIPIESIAKMMGHSGIRTTQRYAEVTDKKISKDM 386


>gi|94442294|dbj|BAE93646.1| integron integrase [uncultured bacterium]
          Length = 162

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 52/112 (46%)

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + G G+      L      A   +     F  N     P    ++   ++    Q+ I++
Sbjct: 50  VDGYGETTLPYALAREYPSAAKSWMWQYAFPSNQRCFAPDLGTMKRHHVHQTSVQKAIKR 109

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                 +     +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 110 AVTRCNINKRVGSHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|307253418|ref|ZP_07535289.1| Integrase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307264438|ref|ZP_07546024.1| Integrase [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|306859097|gb|EFM91139.1| Integrase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306870254|gb|EFN02012.1| Integrase [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 296

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 112/307 (36%), Gaps = 30/307 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +N+L      R L   T +SY+   RQ              I+   Q++   + A+ ++
Sbjct: 5   YKNFLH-----RYLRADTKKSYDKAIRQVCKQCE--------IEFPSQVTSDVLLAWRNR 51

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT--ESNILNMRNLKKSNSLPRALNEKQAL 135
               KI   +    L  +K   K+  +  +    E+    +  L+   +  + L + Q +
Sbjct: 52  VVGTKIKPVTWNSYLRHLKCIYKFGIEHNLLNYQENPCNKL-FLRTGKAKRKVLTKSQMM 110

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L D  L                I+       +R ++ L L   ++   +  + I  + +
Sbjct: 111 KL-DFFLQGRLPAVLSPQWFIQTIINTFRFTAIRRAQLLRLKVDDVDLSRKVIHISPEIN 169

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--------LPLFRGIRGKPL--NPGVFQR 245
           K      +P   K +L Y ++   +L  + Q        + LFR  R K L         
Sbjct: 170 KNHEYHCIPISEK-LLPYLEMLIAELRKHHQCTNSQLFNINLFRKTRYKWLITTEYQISH 228

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             R + +   +    + H  RH+ AT+L+ N  +L   + +LGH  +  T  Y   + + 
Sbjct: 229 LFRVISK--NIGFQVSPHRFRHTVATNLMRNPDNLYVAKQLLGHKDVRVTLTYIENDVEM 286

Query: 306 GGDWMME 312
             + + +
Sbjct: 287 IREKVNK 293


>gi|254513217|ref|ZP_05125282.1| tyrosine recombinase [Rhodobacteraceae bacterium KLH11]
 gi|221532221|gb|EEE35217.1| tyrosine recombinase [Rhodobacteraceae bacterium KLH11]
          Length = 146

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 5/125 (4%)

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            R+VP+         +Y        +L    P  F    G+   P    + +R       
Sbjct: 2   DRMVPIGERALLWCEKYLHEVRPQFDLTGHDPAFFLTSLGEAFTPNRMTQLVRGHINAAE 61

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  S + H  RHS AT +L NG D+R IQ +LGH +L TTQIYT V+ +     + +I+ 
Sbjct: 62  IGKSGSCHLFRHSCATLMLENGADIRYIQQLLGHAKLDTTQIYTQVSIRQ----LKQIHT 117

Query: 316 QTHPS 320
            THP+
Sbjct: 118 LTHPA 122


>gi|193215908|ref|YP_001997107.1| integrase family protein [Chloroherpeton thalassium ATCC 35110]
 gi|193089385|gb|ACF14660.1| integrase family protein [Chloroherpeton thalassium ATCC 35110]
          Length = 344

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 55/296 (18%), Positives = 100/296 (33%), Gaps = 22/296 (7%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
            K R N++   E        T +++    +    F +     +I+   I +    + +AF
Sbjct: 69  FKRRSNFVAYFEKHAQEKPKTEKAWRNTLKYLKQFSS-----QISFAGIDEEWLEKFKAF 123

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           + +R    +   +     S IK+ L+   K  I +     ++ N+KK+      L+E + 
Sbjct: 124 LLER----VSPNTAHTYFSKIKAALRKAVKEGILSLDPAAHVPNIKKNQPERVFLSEDEL 179

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
             L           T   +             GL +    +LT +NI            G
Sbjct: 180 ARL---------QRTPCKNENVRLAFLFACFTGLNLQSLETLTWKNIKKSSHDYCFIELG 230

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL--NPGVFQRYIRQLRR 252
            KI     + S+   +     L        I   L R      L  +    Q  +    +
Sbjct: 231 QKI--PSGIDSLPVTLEAEQVLNQVSKANGIVEALSRSDEPIFLLPSRTEIQNCLNSWAK 288

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
              L    +    RH++A   LSN  DL ++   LGH  +  T+IY ++      +
Sbjct: 289 EASLEKRISFQVSRHTYAIRSLSNEMDLYTLSKFLGHKTIGVTKIYQDMLPAKSAE 344


>gi|313893237|ref|ZP_07826813.1| phage integrase, N-terminal SAM domain protein [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313442216|gb|EFR60632.1| phage integrase, N-terminal SAM domain protein [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 212

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 74/175 (42%), Gaps = 21/175 (12%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS-KRR 79
           ++    IE G S+ TL  Y+      L          I +  +RQ+   ++RA+++  + 
Sbjct: 51  FISAKRIE-GCSERTLAYYKATIEHMLS---------IIVIPLRQVQTDDLRAYLAEYQL 100

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                  ++      + SF  +L+      +S I  +  ++  + +   L+E+    L D
Sbjct: 101 RNNCSKTTVDNIRRNLSSFFSWLEAEDYIIKSPIRRIHKIRTGSKVKETLSEECIEKLRD 160

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           + L            R+ A++ LLY  G+R+ E ++L   +I  ++    + GKG
Sbjct: 161 SCL----------QIRDLAMIDLLYSTGIRVGELVNLNINDINFEERECIVYGKG 205


>gi|168184027|ref|ZP_02618691.1| tyrosine recombinase XerC [Clostridium botulinum Bf]
 gi|237794099|ref|YP_002861651.1| tyrosine recombinase XerC [Clostridium botulinum Ba4 str. 657]
 gi|182672827|gb|EDT84788.1| tyrosine recombinase XerC [Clostridium botulinum Bf]
 gi|229261398|gb|ACQ52431.1| tyrosine recombinase XerC [Clostridium botulinum Ba4 str. 657]
          Length = 138

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 4/127 (3%)

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
           S + + GKG+K R + L P+ +KAI ++  +    +N+N    LF       +     Q 
Sbjct: 4   SFIYVVGKGNKKREIFLTPAAKKAINDWLHIRN-SINVNTN-ALFISRNSNRITTRAIQN 61

Query: 246 YIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTNVNS 303
            +++     GL   S + H LRH+ AT +   G  D+RS+Q ILGH  ++TT+IYT+++ 
Sbjct: 62  IVKKYVITSGLDTKSISTHKLRHTAATLMYKYGRVDIRSLQQILGHESVATTEIYTHIDE 121

Query: 304 KNGGDWM 310
                 +
Sbjct: 122 HQLQSAV 128


>gi|85059870|ref|YP_455572.1| phage integrase [Sodalis glossinidius str. 'morsitans']
 gi|84780390|dbj|BAE75167.1| phage integrase [Sodalis glossinidius str. 'morsitans']
          Length = 329

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 38/245 (15%)

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKR---SLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           RQ++      +   R  +    +++      L  + S L  ++      E  +  M+ +K
Sbjct: 99  RQITKASFSDYRVLRLAEGKKAKTINLDQEKLGAVFSVL--IELGHYHGEHPLKEMKKIK 156

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
                   L  ++  TL+             ++  N     L    G R  E   L  + 
Sbjct: 157 LPVQEMGFLTREEINTLL-----------ARLEGDNLKAAKLCLATGARWGEVFKLRREE 205

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           ++ ++ T  +  K +K R V +   +   I +                    I+   L  
Sbjct: 206 VIGNKVT-YLNTKNNKNRAVFISTELCAQIRD-------------------SIQNGRLFA 245

Query: 241 GVFQRYIRQLRRYL--GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            +  RY+R   + +   LP     H LRH+FA+H + NGG++ ++Q ILGH  +  T +Y
Sbjct: 246 NLNYRYVRDCIKEIAPNLPAGQAVHVLRHTFASHFMMNGGNILALQRILGHSSILQTMVY 305

Query: 299 TNVNS 303
            +   
Sbjct: 306 AHFAP 310


>gi|258514691|ref|YP_003190913.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257778396|gb|ACV62290.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 316

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 65/275 (23%), Positives = 112/275 (40%), Gaps = 27/275 (9%)

Query: 39  YEC--DTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           Y C    RQFL F A        +Q IR +    I+ FI  RR Q I ++ +K  +  ++
Sbjct: 44  YRCKSSMRQFLFFCA----NNYRMQNIRNIQDKHIKDFIEYRRDQGINEKVIKNDIWAVR 99

Query: 97  SFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
            F +Y  K +   +++ +  +++      + RA  E +   ++D          + +  +
Sbjct: 100 LFHRYTPKAKNRISDNEVFGLKSTPDGR-VDRAWTEGEFKKMLDF--------AEKLGRQ 150

Query: 156 NSAI-LYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
           + A  + L    GLRI E L L+ ++         L ++GKG + R + L     +A+ E
Sbjct: 151 DVAFTMRLAQHAGLRIHECLRLSKEDAEAALRTGILHVKGKGGRERDLKLSSEALQALSE 210

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA-- 270
                  D       P  +    K    G   ++  + R       + T H LRH+FA  
Sbjct: 211 ASVRINNDAGKLFVRPGQKTHSAKKSIEGFISKHRDKFRELEDREKNMTFHGLRHTFARK 270

Query: 271 --THLLSNGGDLR----SIQSILGHFRLSTTQIYT 299
                +  G D++     +  ILGH R   T+IY 
Sbjct: 271 EYFQRIDRGMDIQRALVEVSRILGHNRPEVTKIYL 305


>gi|223937134|ref|ZP_03629041.1| integrase family protein [bacterium Ellin514]
 gi|223894156|gb|EEF60610.1| integrase family protein [bacterium Ellin514]
          Length = 378

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 103/276 (37%), Gaps = 21/276 (7%)

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
           +E +    + Q+    I +FI+KR+      R++   ++ +++ L      K  T+    
Sbjct: 95  KEHLKDVRLNQIRPVLINSFIAKRQKAGRSARTVNLEVTVLRNVLNRAIDEKWITQLPTQ 154

Query: 115 NMRNLKKSNSLPRALNEKQALTLV---------DNVLLHTSHETKWIDARNSAI--LYLL 163
           N+R LK +          +   L          +  L     + + +         + L+
Sbjct: 155 NLRPLKSAGRKRDFTPATEIDRLCHVALQPLFCEGRLALAEEKGEPLQNGQQFADYIRLM 214

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRI----QGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
             CG R++E L L   +I  ++  L +      K  K R+V   P +   + E       
Sbjct: 215 TYCGARLAETLRLRWSDINWEKRQLTVGSEGNSKNRKWRVVDFNPELESLLKEMLPRRTP 274

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
           DL      P  RG +  P     F+  +   R    LP     H  RH F +  +  G D
Sbjct: 275 DLEWLFPSPR-RGEKDHP--AKTFRESLILARTAAKLPK-FGFHDCRHHFISQCVMAGID 330

Query: 280 LRSIQSILGHFR--LSTTQIYTNVNSKNGGDWMMEI 313
             +I   +GH    +   ++Y ++++++      ++
Sbjct: 331 YMTIARWVGHQDGGILIGKVYGHLSNEHAQLQAQKL 366


>gi|332638801|ref|ZP_08417664.1| integrase [Weissella cibaria KACC 11862]
          Length = 363

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 63/295 (21%), Positives = 112/295 (37%), Gaps = 28/295 (9%)

Query: 25  LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84
           L +E G+ + T   YE    Q  I +  Y     T  T+ Q++    ++F++        
Sbjct: 71  LHLETGMKEAT---YESWRFQKKIVVDVY----FTGLTLDQITRPMYQSFLNH-YAIGKK 122

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNEKQALTLVDNVL 142
            +++ +    ++  +       +        +      +     + L   +  TL++ + 
Sbjct: 123 RQTVSKRHRLLRLVINQAFHDGLIQSDPTFGVTIPGSDSKDASEKFLQLDELTTLIEYI- 181

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
               ++ K I  R   ++YL+   GLR  EAL+LT  +I  D  T+ +         V  
Sbjct: 182 ---ENDEKLITWRTGFMVYLISLSGLRAGEALALTKNDIDSDARTINVSKTKQLSGAVTT 238

Query: 203 LPSVRKAILEYYDLCPFDL---------NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
             +             FD          + N    LF G R     P V  R++ +L + 
Sbjct: 239 PKTKTSNRTIVMPNRFFDSYQKFIDAKEHWNSANELFDGRR----TPSVVNRWLERLEKK 294

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGG 307
           LG     + H LRHS  ++LLS+G D+      LGH  +S TQ  Y ++      
Sbjct: 295 LGFENIISLHGLRHSHVSYLLSSGVDISYASKRLGHSNISITQDTYAHLLQHKQQ 349


>gi|328552971|gb|AEB23463.1| putative phage integrase; phage SPbeta [Bacillus amyloliquefaciens
           TA208]
          Length = 360

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 112/274 (40%), Gaps = 24/274 (8%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
            T ++Y CD +QF   L     E ++   +  ++ +++  +I   +++ + ++S+KR L+
Sbjct: 45  NTRKNYACDIKQFFRILKEKEIEYLSENDL-VITKSDLAGYIKHLQSKGLVNKSIKRKLA 103

Query: 94  GIKSFLKY--LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
            ++   KY     ++    S   ++  LK         N+++A  + +++ ++   +   
Sbjct: 104 SLRMLYKYLSHDYKEFIDLSVFDSVGKLKTVEKNWGRTNKEEADLIAEDMYINERQKPLH 163

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDD----QSTLRIQGKGDKIRIVPLLPSVR 207
                 A     +    R+S  L L   +   D       + +  KG K+    +  S  
Sbjct: 164 KKLCVKAAARTSF----RLSALLVLRWIDFELDPTTGHYVVSVLDKGSKVVSTGINKSFY 219

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP--LSTTAHTL 265
           + +LE       D N      +F+G     L+    +  +++ +  LG+P       H+ 
Sbjct: 220 EELLEL-----RDENAVDTDYVFKG-----LSEQSLRHSLKRSKERLGIPPERDLKFHSF 269

Query: 266 RHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIY 298
           +     ++  + G D+ + +    H  ++TT+ Y
Sbjct: 270 KGVGIDYVYEHTGHDILAAREQGNHSSVATTERY 303


>gi|315163811|gb|EFU07828.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1302]
          Length = 392

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/297 (17%), Positives = 111/297 (37%), Gaps = 51/297 (17%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSL---KRSLSGIKS----FLKYLKKRKITTE 110
           +  + +  L+   +   +   + + I   S    K +L  ++       KY  K+ I ++
Sbjct: 97  LGEKKLIDLTPDFLEELMFSLKERGIDGESQGYAKNTLYSLRQTLNMIFKYCVKKGILSD 156

Query: 111 SNILNMRNLKKSNSLP-----------RALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           + + N+   K   S+            + L   +   L++  +LH        +   + +
Sbjct: 157 NPLTNVPMPKYQKSVTDLKRSLNSLDEKYLTIDELRMLLNYSILHE-------ELPLATL 209

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTL------RIQGKG-----------DKIRIVPL 202
            Y+L+  G RISEAL+L  ++I  + + +       ++GK               R V +
Sbjct: 210 FYVLFYTGCRISEALALQKEDIDFENNEILFYKQTSVKGKQIDFKIETTKSVSSARRVVV 269

Query: 203 LPSVRKAILEYY--------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
              V + +L+           +        + + L    RG P        +I++     
Sbjct: 270 TDLVMEKLLQLITVLDNLNSQVPFRVKENYLFVYLSPFKRGIPYRREYVNDHIKRCVERC 329

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           G+      H  RH+ A+ L++       ++  LGH   ST++IY ++ S+     + 
Sbjct: 330 GITKPFHTHLTRHTMAS-LVAQHCSWEVLKGRLGHADKSTSEIYRHLTSEEKMKPLK 385


>gi|315919179|ref|ZP_07915419.1| integrase [Bacteroides sp. D2]
 gi|313693054|gb|EFS29889.1| integrase [Bacteroides sp. D2]
          Length = 321

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 56/299 (18%), Positives = 101/299 (33%), Gaps = 37/299 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + ++  L  E   S  T   Y+     F  F            + RQ++   +R +    
Sbjct: 12  EFYIGRLRKEGRYS--TAHVYKNALFSFSKFCGTLN------VSFRQVTRESLRRYGQYL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-----NLKKSNSLPRALNEKQ 133
               +   ++   +  ++S      +  I      L        ++++  +LP       
Sbjct: 64  YECGLKPNTISTYMRMLRSIYNRGVEAGIAPYVPRLFHDVYTGVDVRQKKALPAV----- 118

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLY-GCGLRISEALSLTPQNIMDDQSTLRIQG 192
                +   L           R  AI  L++  CG+  ++   L       +Q+ LR   
Sbjct: 119 -----ELHKLLYEDPKSERLRRTQAIAALMFQFCGMSFADLAHLEKSA--LEQNVLRYNR 171

Query: 193 -KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY----- 246
            K      V +L +  + I +  +      +    L        K L+   ++ Y     
Sbjct: 172 IKTKTPMSVEVLDTASEMINQLRNREDAQPDCPDYLFDILSGDQKRLDERGYREYQSALR 231

Query: 247 -----IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                ++ L R L L    T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 232 QFNNCLKDLARALHLQSPVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLK 290


>gi|298375473|ref|ZP_06985430.1| integrase [Bacteroides sp. 3_1_19]
 gi|298267973|gb|EFI09629.1| integrase [Bacteroides sp. 3_1_19]
          Length = 410

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 53/290 (18%), Positives = 104/290 (35%), Gaps = 31/290 (10%)

Query: 35  TLQSYE---CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           T   Y       R+FL     Y  E I ++ +      +   F+  R  +K    ++   
Sbjct: 132 TFTRYRTVCNHIREFLPH--TYKREDIPLKELNLTFINDFEYFL--RTEKKCRTNTVWGY 187

Query: 92  LSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           +  +K  +   +       +     + + +  +     L + +  TL+D  + + +HE  
Sbjct: 188 MIVLKHIVSIARNDGRLPFNPFAGYINSPESVDR--GYLTQTEIQTLMDAPMKNATHELV 245

Query: 151 WIDARNSAILYLLYGCGLRISEALSLT---PQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
                   +       GL  S+  +LT    Q   D    +  + K         L  V 
Sbjct: 246 ------RDLFVFSVFTGLAYSDVKNLTADRLQTFFDGNLWIITRRKKTNTESNIRLLDVP 299

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           K I+E Y     D ++               + G   + ++++ R     +  T H  RH
Sbjct: 300 KRIMEKYKGLARDGHVFPVP-----------SNGSCNKILKEIGRQCSFKVRLTYHVARH 348

Query: 268 S-FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +   T LLS+G  + ++  +LGH  + TTQIY  + ++     M  +  +
Sbjct: 349 TNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQKISQDMETLSHK 398


>gi|223587858|emb|CAX36644.1| integron intagrase IntI protein [Citrobacter sp. JEK-2009]
          Length = 136

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 48/92 (52%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 45  RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 104

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           SFAT LL +G D+R++Q +LGH  +STT IYT
Sbjct: 105 SFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 136


>gi|126698932|ref|YP_001087829.1| putative tyrosine recombinase [Clostridium difficile 630]
 gi|254974878|ref|ZP_05271350.1| putative tyrosine recombinase [Clostridium difficile QCD-66c26]
 gi|255092265|ref|ZP_05321743.1| putative tyrosine recombinase [Clostridium difficile CIP 107932]
 gi|255100354|ref|ZP_05329331.1| putative tyrosine recombinase [Clostridium difficile QCD-63q42]
 gi|255306292|ref|ZP_05350463.1| putative tyrosine recombinase [Clostridium difficile ATCC 43255]
 gi|255314005|ref|ZP_05355588.1| putative tyrosine recombinase [Clostridium difficile QCD-76w55]
 gi|255516685|ref|ZP_05384361.1| putative tyrosine recombinase [Clostridium difficile QCD-97b34]
 gi|255649784|ref|ZP_05396686.1| putative tyrosine recombinase [Clostridium difficile QCD-37x79]
 gi|306519888|ref|ZP_07406235.1| putative tyrosine recombinase [Clostridium difficile QCD-32g58]
 gi|115250369|emb|CAJ68191.1| putative phage tyrosine recombinase [Clostridium difficile]
          Length = 302

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/267 (19%), Positives = 105/267 (39%), Gaps = 25/267 (9%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           L+  T   Y      F  FL          + +   +  + + F+   +T K    + ++
Sbjct: 22  LNPNTKHDYLSKVILFKEFLKG--------KELIYATKEDCKNFVDYIQT-KYAKSTCEK 72

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR--ALNEKQALTLVDNVLLHTSHE 148
             S + SF  +LKK      +    +     +    +   L+ ++   L+  +       
Sbjct: 73  IYSYLHSFYNFLKKEGYIDINPFRYVEKPTVTRIKTKDDVLSIQEINKLIGIL------- 125

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPS 205
              ++ R+  I+  L   G  ++E +SL  +++M   +D S +R+ GKG K R+V L P 
Sbjct: 126 -PKLNIRDRVIIVCLVTTGCLLNELVSLKWKDLMVDENDNSYVRL-GKGRKERVVKLHPY 183

Query: 206 VRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             K + +Y +     ++ +     +F   +   +     +  +++     GL    +A  
Sbjct: 184 FFKLLEDYRNYSGLPEVIIPSDDFIFTTQKSNSITDRNVRLIVKKALDLAGLSQY-SARD 242

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFR 291
            RHSFA   L  G D   +++ LG   
Sbjct: 243 FRHSFAAISLRLGADESDVKNQLGWSD 269


>gi|89147390|gb|ABD62555.1| integrase [uncultured bacterium]
          Length = 163

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/111 (34%), Positives = 54/111 (48%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            G G+      L    R A  ++     F   +    P     R   L+    QR +++ 
Sbjct: 52  NGYGEVYLPEALSRKYRGANRDFVWQWLFPSKVISTDPRSGIERRHHLSEDSLQRAVKKA 111

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                +    + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 112 LVKSEINKRGSCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|251792781|ref|YP_003007507.1| integrase [Aggregatibacter aphrophilus NJ8700]
 gi|247534174|gb|ACS97420.1| integrase [Aggregatibacter aphrophilus NJ8700]
          Length = 303

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 111/301 (36%), Gaps = 24/301 (7%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           L +    R L   T++SY+   RQ         ++   + +   LS T++  +      +
Sbjct: 10  LDSFFFHRRLRTDTIKSYKKAMRQL--------QKNCKLDSPEDLSTTDLLRWRKNVLDK 61

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKIT--TESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            I   +    +  +K+  K+  + KI    ++ +  +  +K+     +  + +Q   L  
Sbjct: 62  SIRPITWNSYIRQLKTIFKFGIEHKILSFDKNPLDGL-FVKEGRHRKKVYSPEQLRKLSC 120

Query: 140 NVLLHTS-HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
            +  + +  +          ++       +R ++   L  Q+I  ++  + I  + +K  
Sbjct: 121 GIKENANLPKIIRPTWFIQTLIMTFRCTAIRRAQLTKLKIQDIDLEKRIIYISPEINKNH 180

Query: 199 IVP-------LLPSVRKAILEYYDLCPFDLNLNIQLPLFRG---IRGKPLNPGVFQRYIR 248
                     L P + K I   +            L LF      +GK +         +
Sbjct: 181 DYHTLPISDTLYPYLAKLIDRLHKFKQPSNTQLFNLNLFSNAVKRKGKSMTEDQVSYLFK 240

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            + +Y G+   ++ H  RH+ AT+L+ N  +L   + +LGH  +  T  Y   + +    
Sbjct: 241 VISKYTGVI--SSPHRFRHTAATNLMRNPENLYITKQLLGHKDIKVTLSYIEDDIEMVRK 298

Query: 309 W 309
           +
Sbjct: 299 Y 299


>gi|227329213|ref|ZP_03833237.1| phage integrase [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 343

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 58/312 (18%), Positives = 113/312 (36%), Gaps = 49/312 (15%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-----RQLSYTEIRA 73
           + WL   E  R LS++    Y    +      +   + KI    +      + +  +   
Sbjct: 49  KPWLGEKEDRRRLSEVIDLWYHLHGQSLSAISSRMGKLKIVCDGLGDPIASRFTAKDFAH 108

Query: 74  FISKRRTQKIG-------------DRSLKRSLSGI-KSFLKYLKKRKITTESNILNMRNL 119
           +  KR   +I                ++ R L  +   F +  +  + T  + +  +R  
Sbjct: 109 YRDKRLRGEISNGYHDSPERWAVKPITVNRELQYLTAVFSELKRLGEWTLPNPLDGVRIF 168

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K+ +     L   Q   L+     + + +  W       I+ +    G R SEA +LT  
Sbjct: 169 KEEDKEMAWLTHPQINELLRACESYGNEDLTW-------IVKVCLSTGARWSEAENLTRS 221

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
            +   + +   + KG K R VP+   +   +                      +R + + 
Sbjct: 222 QLSPFKVSF-FKTKGKKNRTVPISQWLHDELA---------------------LRQRRMF 259

Query: 240 PGVFQRYIRQLR-RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
              +Q + + L    + LP     H LRH+FA+H + NGG++  +Q ILGH  +  T  Y
Sbjct: 260 KPCYQNFKKVLAMTSITLPDGQKTHVLRHTFASHFMMNGGNILVLQRILGHANIRETMKY 319

Query: 299 TNVNSKNGGDWM 310
            +    +  + +
Sbjct: 320 AHFAPDHLEEAV 331


>gi|126441280|ref|YP_001060060.1| phage integrase [Burkholderia pseudomallei 668]
 gi|126220773|gb|ABN84279.1| phage integrase [Burkholderia pseudomallei 668]
          Length = 381

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 56/273 (20%), Positives = 101/273 (36%), Gaps = 28/273 (10%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           + +L+  +     +KR+ +     ++K  +  +++ +  + K        I+    L+ S
Sbjct: 111 LHELTTRDFDLLAAKRKAEGDKPATIKHEIGLLRATINEMAKLGFKVSREIV-FPELRTS 169

Query: 123 NSLPRALN---EKQALTLVDNVLLHT--------SHETKWIDARNSAILYLLYGCGLRIS 171
             L R L+   E   L  +D   L          + E       N  I   L   G R S
Sbjct: 170 YRL-RYLDSNDESALLRELDPERLRARINASKPQTPEMTRNMQDNYDITVFLLDTGCRYS 228

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           E  ++    I  D  T+ +     +   V  + S  +AIL       ++     Q  +F 
Sbjct: 229 EVANIPWSAINLDTCTISLYRSKVRNEDVLHMTSRLEAILR----RRWEERRTGQRYVFE 284

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPL---------STTAHTLRHSFATHLLSNGGDLRS 282
              G     G   + I++     GL             T HTLRH+FA+ L+  G  L  
Sbjct: 285 DRTGN--ERGYSTKSIKKAIERAGLNDPVLVKERGGRVTLHTLRHTFASKLVKAGVSLYE 342

Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  +LGH     TQ Y +++  +     +++ D
Sbjct: 343 VSVLLGHSDPKMTQRYAHLSPNDASRKAVKVID 375


>gi|94442292|dbj|BAE93645.1| integron integrase [uncultured bacterium]
          Length = 162

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 52/112 (46%)

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + G G+      L      A   +     F  N     P    ++   ++    Q+ I++
Sbjct: 50  VDGYGETTLPYALARKYPSAAKSWMWQYAFPSNQRCFAPDLGTMKRHHVHQTSVQKAIKR 109

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                 +     +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 110 AVTRCNINKRVGSHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|89147332|gb|ABD62528.1| integrase [uncultured bacterium]
          Length = 163

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/113 (32%), Positives = 51/113 (45%)

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R  G+G       L     +A   +     F        P     R   L      R ++
Sbjct: 50  RATGRGGVYLPHALERKYPRAGESWAWFWVFPSAKLSVDPQTGVERRHHLFEERLNRQLK 109

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +     G+    + HTLRHSFATHLL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 110 KAVVQAGIAKHVSVHTLRHSFATHLLQAGTDIRTVQELLGHSDVSTTMIYTHV 162


>gi|313675312|ref|YP_004053308.1| integrase family protein [Marivirga tractuosa DSM 4126]
 gi|312942010|gb|ADR21200.1| integrase family protein [Marivirga tractuosa DSM 4126]
          Length = 413

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 58/294 (19%), Positives = 107/294 (36%), Gaps = 29/294 (9%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-------I 83
           L+  TL++Y         FLA   + K     ++ ++   +  F    RT K       +
Sbjct: 124 LAPGTLKNYGATENYLKRFLA--AKHKTDDIKLKDITSKFVFDFEYYLRTSKPIDHHNPL 181

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
            +  + + +   K  +    K +   ++   N    K        L E +   + +    
Sbjct: 182 SNNGVMKHMERFKKLINLALKIEWIEKNPFRNF-TPKFDRVEREFLTEAELTKIKEKDFG 240

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIV 200
               +          I       GL   +  +L+ +NI   MD +  +    +    ++ 
Sbjct: 241 RRLEQV-------RDIFVFSCYTGLSFIDVANLSEENIIIGMDGEKWISTHRQKTFNKVF 293

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
             L    +AILE Y   P   +  I LP     +           Y++++     +    
Sbjct: 294 LPLLPQAEAILEKYKDNPQAQHRGILLPAASNQKT--------NAYLKEIADLCEIKKKL 345

Query: 261 TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           T H  RH+FAT + L+NG  + ++  +LGH +L+ TQIY  V     G  M  +
Sbjct: 346 TFHIARHTFATTVTLTNGVPIETVSKMLGHTKLANTQIYAKVVENKIGTDMAAL 399


>gi|238923276|ref|YP_002936791.1| putative integrase/recombinase ripx [Eubacterium rectale ATCC
           33656]
 gi|238874950|gb|ACR74657.1| probable integrase/recombinase ripx [Eubacterium rectale ATCC
           33656]
          Length = 308

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 59/297 (19%), Positives = 108/297 (36%), Gaps = 54/297 (18%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q W++ L  E  + +LT  +Y+     +    A   E + T+    QL    + A     
Sbjct: 39  QKWVEKLAPELKVCELTRTAYQKILNDY----AKEHERQTTLDFHHQLKGAVMDA----- 89

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN--MRNLKKSNSLPRALNEKQALT 136
                                       +          ++         + LN+ +  T
Sbjct: 90  ------------------------VDEGLIERDPTRKAIIKGKTPREKKIKYLNQFELHT 125

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+ ++ +       W        + L+   G+R SEAL++TP++    + TL I    D 
Sbjct: 126 LIADLDIKEEPNWDW-------FILLVAKTGMRFSEALAITPKDFDFGRQTLSISKTWDY 178

Query: 197 IRIVPLLP-----SVRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
                 LP     SVRK  +++  +  F      L    P+F G   + +        + 
Sbjct: 179 KGKGGFLPTKNKSSVRKIQIDWQIVVKFSELIKGLPEDEPIFVG--EEKIYNSTVNDALT 236

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           +  +  G+    + H LRH+ A+ LL  G  + S+   LGH  ++TTQ  Y ++  +
Sbjct: 237 RHCKACGIS-EISIHGLRHTHASLLLFAGVSIASVARRLGHASMTTTQKTYLHIIQE 292


>gi|89147384|gb|ABD62552.1| integrase [uncultured bacterium]
 gi|223369764|gb|ACM88752.1| integrase [uncultured bacterium]
          Length = 163

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 37/162 (22%)

Query: 177 TPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY--------------------- 214
             +++  D   + +  GKG K R   L   +  AI +                       
Sbjct: 1   RVKDVDFDNGCITVHDGKGGKSRNSLLPTGLIAAIKQLIDRVLVIQQEDNAQGVGPSLPF 60

Query: 215 --------------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLS 259
                          +  F  +     P    +    L+  V ++ ++   +  G+    
Sbjct: 61  ALDRKYPSAYRQPAWMFIFPSSTLCNHPYSGKLCRHHLHDSVARKALKAAVQKAGILNKR 120

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|295697303|ref|YP_003590541.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295412905|gb|ADG07397.1| integrase family protein [Bacillus tusciae DSM 2912]
          Length = 326

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 53/292 (18%), Positives = 107/292 (36%), Gaps = 25/292 (8%)

Query: 41  CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLK 100
            D  +F  F +    + +++          +  + +K+  +   +R  +  +S ++    
Sbjct: 34  RDFARFDRFCSAVGHQSLSLP------RELVEQWTAKQIHETETNR--QHRISRMRVLGG 85

Query: 101 YLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE-TKWIDARNSAI 159
           Y+++                     P   +  +   L   +        + +       +
Sbjct: 86  YMQRCGYPAWVYPRQTAAQTSLRYAPYIFSRSELAALFRAIDTCPPERHSPYRHVVFPLL 145

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCP 218
             LLY  GLRI EAL+L   ++     TL I+  K DK R +P+ P++ + +  Y  +  
Sbjct: 146 FRLLYSSGLRIGEALALRGGDVNLQTGTLHIRVAKLDKERRIPVHPALVQRMERY--VKV 203

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-----LSTTAHTLRHSFATHL 273
             +   ++ PLF G  G+           R+      +           H LRH+FA H 
Sbjct: 204 LGITPTLEAPLFPGPSGQSYCESTIYDAFRRFLWEANISHGGRGRGPRLHDLRHTFAVHC 263

Query: 274 LSN----GGDLRS----IQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           L      G DL      + + +GH  L +TQ+Y  + ++     +  +  + 
Sbjct: 264 LRKWVLEGVDLTVALPYLSAYMGHTSLKSTQMYLRLTAEVYPTVVAAVERRY 315


>gi|255691027|ref|ZP_05414702.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|262408519|ref|ZP_06085065.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|293373336|ref|ZP_06619694.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|294646521|ref|ZP_06724158.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294807550|ref|ZP_06766347.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|260623366|gb|EEX46237.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|262353384|gb|EEZ02478.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292631732|gb|EFF50352.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292638140|gb|EFF56521.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294445251|gb|EFG13921.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 409

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/319 (15%), Positives = 119/319 (37%), Gaps = 32/319 (10%)

Query: 13  ELLKER-QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           EL +E+ +++ + +  E+  S  T      D +  L+FL    ++ +    + +L    I
Sbjct: 110 ELFREQLESYKEKVGKEKAKS--TYLGLVADYKSALLFLK--DKKNVEDIALDELDKDFI 165

Query: 72  RAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
             + +    T      +    ++ +K  +   +++ +            K        L+
Sbjct: 166 EDYYNWMLGTCGSASSTAFGRVNTMKWLMHIAQEKGLIKVHPFTGF-GCKPGYKRRSFLS 224

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ--NIMDDQSTL 188
           E++   L+   L +   +          +L  +   GL  ++  ++T +  +   D  T 
Sbjct: 225 EEELQRLIHVELRYKRQQAM------RDMLLFMCFTGLAFADLKAITYKNIHTDSDGGTW 278

Query: 189 RI--QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            +  + K     +V LLP   + + +Y        + +   P+         +    +  
Sbjct: 279 LMGNRIKTGVAYVVKLLPIAIELVEKYKGDNKKKDSPDCVFPVG--------DYETMKSS 330

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV----- 301
            + L +     ++ T H  RH+FA   +  G  L ++Q +LGH  + +TQ+Y  +     
Sbjct: 331 FKVLGKKCDCNVNITPHIGRHTFAVLAILKGMPLETLQKVLGHKSILSTQVYAELINPKV 390

Query: 302 --NSKNGGDWMMEIYDQTH 318
             ++    D +  +Y   +
Sbjct: 391 GEDTDRMCDKIGSVYRLAN 409


>gi|223369862|gb|ACM88799.1| integrase [uncultured bacterium]
          Length = 163

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 66/162 (40%), Gaps = 37/162 (22%)

Query: 177 TPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAIL------------------------ 211
             +++  D S + ++ GKG K R V L  S   A+                         
Sbjct: 1   RVKDVDFDYSQIVVRDGKGQKDRRVMLPKSAVPALRSQIEVVRKIHQNDLANGYGEVYLP 60

Query: 212 ------------EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
                       ++     F   +    P     R   L+    QR +++      +   
Sbjct: 61  EASSRKYRGANRDFVWQWLFPSKVLSTDPRSGIERRHHLSEDSLQRAVKKALVKSEINKR 120

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 121 GSCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|119953753|ref|YP_950558.1| integrase [Streptococcus phage SMP]
 gi|118430565|gb|ABK91889.1| integrase [Streptococcus phage SMP]
          Length = 380

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/271 (18%), Positives = 94/271 (34%), Gaps = 40/271 (14%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            +    ++ ++             +R+ S +     Y     I  ++     +  +   +
Sbjct: 107 NIDPKYVQNYLDNL---DCSRNKKERNKSMLNLAFDYAVDLDIIKDNPARRAKLPRIKKT 163

Query: 125 LP-------RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           L        + L E +   L+  +    S     +      +   +   G RI EA+SL 
Sbjct: 164 LEDWKKIEEKYLEEDEIKPLLKELFRRPSIYRAAL------LAEFMSLNGCRIGEAVSLE 217

Query: 178 PQNIMDDQSTLRIQGKGDKI-----------------RIVPLLPSVRKAILEYYDLCPFD 220
           P+N   +   L++ G  D                   R   +     + I E   +   +
Sbjct: 218 PENRDFETKILQLHGTYDHTKGYRNGEKTTPKTNASYRETFMTKREMEIIEELEFMNELE 277

Query: 221 LNLNIQL----PLFRGIRGKPLNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLL 274
            N N +      +F    G P+    F   +++  + L   +  + T+H  RH+  + L 
Sbjct: 278 KNTNPRYRDMGYIFTTKNGVPIQTNSFNLALKKANQRLEKPIQKNLTSHIFRHTLVSRLA 337

Query: 275 SNGGDLRSIQSILGHFRLS-TTQIYTNVNSK 304
            N   L++I   +GH     TTQIYT+V  K
Sbjct: 338 ENRVPLKAIMDRVGHADAKTTTQIYTHVTKK 368


>gi|312621730|ref|YP_004023343.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202197|gb|ADQ45524.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 329

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 90/269 (33%), Gaps = 25/269 (9%)

Query: 56  EKITIQTIRQLSYTEIRA-FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
           + I  + +  +   +I+  +IS   T KI D ++ +    +    K+    +  + + + 
Sbjct: 68  QAIGSKPLSDVKPLDIQKIYIS--LTGKISDCTILKLHRLLHEIFKHAVMWEYISNNPVK 125

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            +        +    + + A   ++ +   T +            + +    G+R  E +
Sbjct: 126 KVLPPSPEKKVFDVWDAETAKRFLEVIRNETIYYP----------VLIALHTGMRAGEIV 175

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLP----------SVRKAILEYYDLCPFDLNLN 224
           SL   ++  +   + +       R +               +   +              
Sbjct: 176 SLKWCDVNFEARIISVVKSVRNNRGLKTSDVKTKTSKRSVYINDVLYSELKNLYEITKPK 235

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
               +   +    L      +  ++L +    P+    H LRH+FAT +LS G + + + 
Sbjct: 236 PDDFVCPRLPTGNLTVEYLSKRFKKLVKRYNFPV-IRFHDLRHTFATLMLSLGVNTKIVA 294

Query: 285 SILGHFRLS-TTQIYTNVNSKNGGDWMME 312
            ILGH  +  T   Y++V        M E
Sbjct: 295 EILGHSDIKLTADTYSHVLPTMQESAMKE 323


>gi|307828928|gb|ADN95150.1| integrase [Staphylococcus aureus]
          Length = 381

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 54/327 (16%), Positives = 106/327 (32%), Gaps = 58/327 (17%)

Query: 25  LEIERGLSKLTLQ--SYECDTRQF----LIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           L +E+   + T++  +Y+     F    L        +KIT+Q  +++    I  +    
Sbjct: 76  LWLEQY--QNTVRESTYQRVLTLFDTAILEHFQDVPIKKITVQYCQKV----INKW---- 125

Query: 79  RTQKIGDRSLKRSLSGIKSF----LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
             +K  D      +  I+ +     KY    KI  ++   + +  +K  +   A  +  +
Sbjct: 126 -NKKYSD------IKAIRIYTSNVFKYAVSLKIILDNPFAHTKAPRKKEAQQDASTKYYS 178

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
              +   L          D    AI   L   G R  E ++LT  +I   + T+ I    
Sbjct: 179 SDELKQFLTFVED-----DPLYYAIFRTLAFTGFRRGELMALTWNDIDFTRQTISINKTC 233

Query: 195 ----------------DKIRIVPLLPSVRKAILEYYDL------CPFDLNLNIQLPLFRG 232
                              R + +       +  +                +    +F  
Sbjct: 234 ARGANYKLVIQEPKTKSSHRTISIDDKTASVLKSWRTHQRVESLKYGHSTSDKHQHVFTT 293

Query: 233 IRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           +R    L P    + +  +            H  RH+  + L   G  ++ +Q  LGH  
Sbjct: 294 VRDNKQLYPEHCNKALDLICEKNSF-KRIKVHGFRHTHCSLLFEAGLSIQEVQDRLGHGD 352

Query: 292 LSTTQ-IYTNVNSKNGGDWMMEIYDQT 317
           + TT  IY +V  K   D + + + + 
Sbjct: 353 IKTTMDIYAHVTEKQ-RDQVADKFAKY 378


>gi|294806822|ref|ZP_06765648.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|294445992|gb|EFG14633.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 409

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 45/300 (15%), Positives = 114/300 (38%), Gaps = 24/300 (8%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQTIRQLSYTEIR 72
             ++ +++ + + IE+  ++ T +    D +  L+F+      E I I+ + +    +  
Sbjct: 112 FREQLESYKKKIGIEK--AESTYRGLVADYKNLLLFMKSKKNTEDIVIEELEKSFIEDYY 169

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
            ++    T  + + +    ++ +K  +   +++         +   + +       L+E+
Sbjct: 170 NWM--LGTCALANSTAFGRVNTLKWLMYIAQEKGWIRVHPFASFECMPEYKRR-SFLSEE 226

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ--NIMDDQSTLRI 190
           +   ++   L +              +   +   GL  ++  ++T    +   D  T  +
Sbjct: 227 ELQRIIRIELRYKRQRAM------RDMFLFMCFTGLSYADLKTITYDNIHTDSDGGTWLM 280

Query: 191 --QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
             + K     +V LLP   + I +Y      D   +    +F       +     +  + 
Sbjct: 281 GNRIKTGVAYVVKLLPIAIELIEKY---RGTDEKKDSPEYVFPVGEYNAM-----RLSLG 332

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            + R     +  T H  RH+FA   +  G  L ++Q +LGH  + +TQ+Y  + +   G+
Sbjct: 333 IIGRKCNCRVEVTPHIGRHTFAVLAILKGMPLETLQKVLGHKSILSTQVYAELINPKVGE 392


>gi|291515411|emb|CBK64621.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 367

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 111/289 (38%), Gaps = 29/289 (10%)

Query: 35  TLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
           T + Y C  ++   FLA  Y  E I ++ +      +   F+  R  +K    ++   + 
Sbjct: 92  TWKKYCCVCKRVREFLAHTYHREDIPLKELNLTFINDFEYFL--RTEKKCRTNTVWGYMI 149

Query: 94  GIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
            +K  +   +       +     + + +  +     L++++   +++    + +H     
Sbjct: 150 VLKHIVAIARNDGRLPFNPFSGYINSPESVDR--GYLSQEEIKAVMNYKTANKAH----- 202

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
            AR   +       GL  ++   LT  N       +   +  + K +    + LL   ++
Sbjct: 203 -ARIRDLFVFSIFTGLAYADVKGLTTDNLQTMFDGNLWIITRRKKTNTESRIRLLDIPKR 261

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            I +Y        +  +   +F        N       +R++ +  G+    T H  RH+
Sbjct: 262 IIEKY-------ADQRLDNHVFYMPCNCHCND-----ILREIGKQCGIKNKLTFHLARHT 309

Query: 269 FATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           FAT + LS G  + ++  +LGH  + TTQIY  + ++     M  + ++
Sbjct: 310 FATTITLSQGMPIETVSRLLGHTNIKTTQIYAKITNEKISRDMSALTER 358


>gi|260655607|ref|ZP_05861093.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
           [Jonquetella anthropi E3_33 E1]
 gi|260629660|gb|EEX47854.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
           [Jonquetella anthropi E3_33 E1]
          Length = 391

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 94/261 (36%), Gaps = 18/261 (6%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           + +  +S   I     +   + +G  S+KR  + I++ L Y   + +     +      +
Sbjct: 136 KPLASISAERIIKIREQLLRRGLGLTSVKRYENEIRASLNYAASQGLIEPIKVCEQIKCE 195

Query: 121 KSNSLPRALNEKQALTL-----VDNVLLHTSHETKWIDARNSA--ILYLLYGCGLRISEA 173
            +  + R L   +   L       +  L  +H+       +    ++ L    G+R    
Sbjct: 196 TTQRI-RYLTPDEEERLQKALKERDEELRKTHKNIRGRYADYLEPLITLSLKTGIRRGAM 254

Query: 174 LSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
           L L  ++I     T+ ++G   K  K R +PL P   + +  +      +        +F
Sbjct: 255 LRLEWRDIDFAAKTILVRGEICKTGKSRRIPLSPIAFETLKAW-----REQQPQENKYVF 309

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
                        +   + L     +  +   H LRH FA+ L+  G DL +++ +LGH 
Sbjct: 310 PSAYTNQPKKHC-KCAWKNLLIRANIT-NFHWHDLRHDFASKLVMAGVDLNTVRELLGHS 367

Query: 291 RLSTTQIYTNVNSKNGGDWMM 311
            L  T  Y ++        + 
Sbjct: 368 TLEMTLRYAHLAPSKLSAAIE 388


>gi|149923898|ref|ZP_01912286.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149815241|gb|EDM74788.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 392

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 57/286 (19%), Positives = 105/286 (36%), Gaps = 38/286 (13%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G    TL++     R  LI            + + Q++   ++  +  + T+ + ++S+ 
Sbjct: 90  GHKPSTLETKRQVLRLHLI-------PAFGDKRLDQINSELVQR-LKAKLTEHMANKSIN 141

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             L  + + LK   +  +  E  +   + ++  N      +  +   LV      +    
Sbjct: 142 NVLGVLNTMLKCAVEWGVLEELPV-RAKRMRVKNPSMDFYDFDEYAALVKAAAAQSPE-- 198

Query: 150 KWIDARNSAILYLLYG--CGLRISEALSLTPQNIMDDQSTLRIQG----------KGDKI 197
                    ++++L G   GLR  E   L    +   +  L ++           K DKI
Sbjct: 199 --------CLVFVLLGGDAGLRAGEIRGLHWAAVDLRRRQLTVEHSEYKGELTTPKYDKI 250

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R VPL   +  A+      C   L    +       R  P +    +  + + +    L 
Sbjct: 251 RTVPLTRRLADALGALPRDCELVLYRGSEG------REIPTSRQTGRTMLEKAQDAAKL- 303

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
                HTLRH+F +HL   G   R IQ + GH  L TTQ Y +++ 
Sbjct: 304 RRRGPHTLRHTFCSHLAMRGAAARVIQQLAGHASLVTTQRYMHLSP 349


>gi|298245057|ref|ZP_06968863.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297552538|gb|EFH86403.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 278

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/273 (19%), Positives = 98/273 (35%), Gaps = 32/273 (11%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILNMRNLK 120
             ++++ T I  F++          + K++ + +  F  +L++ K +   +   ++    
Sbjct: 15  HPQEITRTSIEFFLAALS----SSSAKKQAKAALSGFCTWLQEEKQLLDRNPTRHIAIPA 70

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           ++   PR L+E Q   L + +        K       A+  L Y  G R+S+   L    
Sbjct: 71  QALLAPRELSEDQRYVLANLIEREGDLRGK-------AVFALGYWAGCRVSDVSWLQLDQ 123

Query: 181 IM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF----------DLNLNIQLP 228
           +        + +  KG K R + L    R+ + EY +                   +   
Sbjct: 124 VRVTGKAGVITVGHKGGKTRTIDLTNGARRLLHEYLEQGIRKESAYAFTSQRAKKRVSAG 183

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
              G R        + + ++ L R     L    T H LRH FA    + G  L  +   
Sbjct: 184 EVDGWRWSEDGIHQWWQQLKSLARAAEYELINDVTFHDLRHDFAHRARAAGWSLEEVAYY 243

Query: 287 LGHFR------LSTTQIYTNVNSKNGGDWMMEI 313
           LGH        ++TT  YT V+ +     + +I
Sbjct: 244 LGHITKAGTPAIATTIRYTQVSREAVKRKLKDI 276


>gi|253734958|ref|ZP_04869123.1| transposase [Staphylococcus aureus subsp. aureus TCH130]
 gi|253727140|gb|EES95869.1| transposase [Staphylococcus aureus subsp. aureus TCH130]
          Length = 675

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 56/336 (16%), Positives = 111/336 (33%), Gaps = 28/336 (8%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           N  +I S ++ +  + +L+N  I   ++  T + Y    R    F    ++ K T  ++ 
Sbjct: 205 NFEKIESIKMRELAKKYLKNRLITGDIAFATARFY---IRVLTRFFQNISKNKETRNSLN 261

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRS------LSGIKSFLKYLKKRKITTESNILNMRN 118
           +L    I A+I                      L  I+ FL  +  +     +   ++R 
Sbjct: 262 ELDRCHIEAYIEFLFEYANSKNVQSSRNFVREELKAIRRFLNDIASQNY-DIAPSEDIRF 320

Query: 119 LKKSNSLPR--ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           L      P+    N  Q   + D VL         +      ++++ +  GLRIS+ L+L
Sbjct: 321 LIYPQDFPKREKKNSSQIDYIPDFVLEQLFEHINDLHKDLIPVVWIAFKTGLRISDVLTL 380

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG---- 232
               +        I     K  +      +   + +   +   +  +             
Sbjct: 381 KNNCLAKVNGKFSIITDIAKTFVKGHRIPIDNELADIVAVLIANSKIKSTKDNNPNNYIF 440

Query: 233 ------IRGKPLNPGVFQRYIRQLRRYLGL------PLSTTAHTLRHSFATHLLSNGGDL 280
                  +G P    + + ++  L +   +            H  RH++A  LL+ G D+
Sbjct: 441 AIHKGKRKGMPFTQHMVRAHLNHLAKTKNILDEQGEVFHFKTHQFRHTYAVKLLNGGADI 500

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            +IQ +L H     T  Y  +           + DQ
Sbjct: 501 LTIQELLAHSSPEMTLRYAKLLDDTKRKAFESVIDQ 536


>gi|224025069|ref|ZP_03643435.1| hypothetical protein BACCOPRO_01803 [Bacteroides coprophilus DSM
           18228]
 gi|298377206|ref|ZP_06987160.1| nicotinate-nucleotide pyrophosphorylase [Bacteroides sp. 3_1_19]
 gi|224018305|gb|EEF76303.1| hypothetical protein BACCOPRO_01803 [Bacteroides coprophilus DSM
           18228]
 gi|298266190|gb|EFI07849.1| nicotinate-nucleotide pyrophosphorylase [Bacteroides sp. 3_1_19]
          Length = 329

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 90/246 (36%), Gaps = 23/246 (9%)

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLK-KSNSLPRALNEKQALTLVDNVLL--HTSH 147
            +  ++ F  +L+     +   IL     K +SN +P      +   +           H
Sbjct: 77  RIIILRGFSSFLQTIGYDSYIPIL----PKHQSNFVPYIYTPDEMERIFKECDRINAYHH 132

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206
                      ++ LLYG G+RI EA+ L   +I      L ++  K  K R VPL PS+
Sbjct: 133 VINSARFSIPCLIRLLYGTGIRIGEAIKLKHCDIDFKNECLLLRECKNGKDRYVPLSPSL 192

Query: 207 RKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-----PLST 260
                +Y      F L++N +   F       ++          +     +         
Sbjct: 193 ALICRDYVTKKQKFGLSINPENYFFVKCNDTSISSKTISNIFNHILERAAIVRNENRKGP 252

Query: 261 TAHTLRHSFATH----LLSNGGDLRSIQSIL----GHFRLSTTQIYTNVNSKNGGDWMME 312
             H LRH+F  +    L  +G D+ ++  IL    GH  ++ T  Y  +      + + +
Sbjct: 253 RLHDLRHTFCVNSFVQLCESGKDIHNVMLILMTYMGHQSIAATNKYVRIVETMFPEIVRQ 312

Query: 313 IYDQTH 318
           + D TH
Sbjct: 313 V-DMTH 317


>gi|260682941|ref|YP_003214226.1| putative tyrosine recombinase [Clostridium difficile CD196]
 gi|260686539|ref|YP_003217672.1| putative tyrosine recombinase [Clostridium difficile R20291]
 gi|260209104|emb|CBA62271.1| putative tyrosine recombinase [Clostridium difficile CD196]
 gi|260212555|emb|CBE03527.1| putative tyrosine recombinase [Clostridium difficile R20291]
          Length = 309

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/267 (19%), Positives = 105/267 (39%), Gaps = 25/267 (9%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           L+  T   Y      F  FL          + +   +  + + F+   +T K    + ++
Sbjct: 29  LNPNTKHDYLSKVILFKEFLKG--------KELIYATKEDCKNFVDYIQT-KYAKSTCEK 79

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR--ALNEKQALTLVDNVLLHTSHE 148
             S + SF  +LKK      +    +     +    +   L+ ++   L+  +       
Sbjct: 80  IYSYLHSFYNFLKKEGYIDINPFRYVEKPTVTRIKTKDDVLSIQEINKLIGIL------- 132

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPS 205
              ++ R+  I+  L   G  ++E +SL  +++M   +D S +R+ GKG K R+V L P 
Sbjct: 133 -PKLNIRDRVIIVCLVTTGCLLNELVSLKWKDLMVDENDNSYVRL-GKGRKERVVKLHPY 190

Query: 206 VRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             K + +Y +     ++ +     +F   +   +     +  +++     GL    +A  
Sbjct: 191 FFKLLEDYRNYSGLPEVIIPSDDFIFTTQKSNSITDRNVRLIVKKALDLAGLSQY-SARD 249

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFR 291
            RHSFA   L  G D   +++ LG   
Sbjct: 250 FRHSFAAISLRLGADESDVKNQLGWSD 276


>gi|298250458|ref|ZP_06974262.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297548462|gb|EFH82329.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 686

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 58/307 (18%), Positives = 106/307 (34%), Gaps = 37/307 (12%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-------QKIGD 85
             T+Q  E   R+F+ +LA        +++   ++   +  + +           + +  
Sbjct: 257 PGTIQGLELALRRFIGWLAETHPF---VESWALVTRDHLLEYANFLDHGATTRGGKPLAT 313

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRN----LKKSNSLPRALNEKQALTLVDNV 141
            + +  LS +  F           E+   ++ +     K    +PR + E++   L+  V
Sbjct: 314 NTKRGRLSKLSRFFSDTATWGW-EETPGRSLLSVGDLPKLPERVPRYIPEEELERLMQAV 372

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRIQ-GKGDKI 197
                   +       A L +    G R  E   L    +    D  + L I  GK  + 
Sbjct: 373 -------HQLDCPYQRAALLIARWSGARRGEIRRLALNCLDRYPDGTARLHIPVGKTKRE 425

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQL------PLFRGIRGKPLNPGVFQRYIRQLR 251
           R++PL      AI E   L      L+ +        LF  I     +  +F   +R   
Sbjct: 426 RLIPLHEEAASAIRELQALHRGQRGLSDEHTGVETQYLFMRIGKLYSDTYLFGSALRLAC 485

Query: 252 RYLGL-----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
              GL       + TAH  RH+  T L   G  L +I  +LGH   S + +Y  ++ +  
Sbjct: 486 ETAGLVTKQGKPTVTAHRFRHTVGTQLAEKGARLHTIMKVLGHTSASMSMVYAQISDREV 545

Query: 307 GDWMMEI 313
                 +
Sbjct: 546 LKDYQAV 552


>gi|262046512|ref|ZP_06019473.1| integrase [Lactobacillus crispatus MV-3A-US]
 gi|260572961|gb|EEX29520.1| integrase [Lactobacillus crispatus MV-3A-US]
          Length = 388

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 103/263 (39%), Gaps = 16/263 (6%)

Query: 52  FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111
            Y E+      I+ +S  + ++F++    +     +++++   +K+      +  +  ++
Sbjct: 99  HYLEKYFGSTKIKDISRAKYQSFLNWL-GKNHAPATVRKTNIMVKACAGNAIEDGLIVKN 157

Query: 112 --NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
             N   +   + +      LNE +   LV   L + +            +L  L+  G R
Sbjct: 158 FTNRTTITGNQDNVRAIEYLNEGEMNKLVQLCLTNLTPRYTSK----YLVLAGLF-TGAR 212

Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE-----YYDLCPFDLNLN 224
           + E  +L   +I      + I    +    +        ++ +     +       L +N
Sbjct: 213 LGELTALKWTDIDFKNKIIDINKTWNPNLKILGPTKTESSVRKIKVNSFLLDKLKQLKIN 272

Query: 225 IQLPLFRGIRGK-PLNPGVFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRS 282
               +F   R   P +     +++R+  + +GL       H+LRH+  ++L+S G D+ +
Sbjct: 273 NSEFIFAIPRTGLPPSSSAVNQFLRKAIKEIGLNKPDFHFHSLRHTHVSYLISQGIDIAA 332

Query: 283 IQSILGHFRLSTT-QIYTNVNSK 304
           I   LGH  ++ T  IY ++  +
Sbjct: 333 ISKRLGHANIAITLSIYAHLLDE 355


>gi|199598924|ref|ZP_03212333.1| Integrase [Lactobacillus rhamnosus HN001]
 gi|199590124|gb|EDY98221.1| Integrase [Lactobacillus rhamnosus HN001]
          Length = 375

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 57/320 (17%), Positives = 122/320 (38%), Gaps = 35/320 (10%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L+     W++  +  +  S++T   Y+   +Q L +     E       ++ +S ++ + 
Sbjct: 62  LIDYWDKWIELYKSGKH-SRITEARYKTIRKQLLAYWGESRE-------LKSISKSDWQG 113

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNE 131
           FI++   +K    ++ +    ++S        +I   +   N+     +    + + L  
Sbjct: 114 FINEF-GKKRAKDTVSKLNGYVRSMADSAVDDQIIYTNFTHNVVLTGNEGQAGIIKYLQV 172

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           K    LV+  L    +E          I+      G R SE L LT  ++   +  + I 
Sbjct: 173 KDLRKLVNYCLEFADYE-----HIAYYIIATGALTGARYSEVLGLTWDHVDLKKRVVHIT 227

Query: 192 GKGDK--------------IRIVPLLPSVRKAIL----EYYDLCPFDLNLNIQLPLFRGI 233
              D               +R + +   +   +L    E  ++       + +  LFR I
Sbjct: 228 RTWDHRYGSGFAATKNKSSVRDIDITRELADLLLRLKKEQQEVYLAQGYRDSKQLLFRSI 287

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   L+     + +R + + L +  + T H LRH+  ++L++N  D+  I   LGH    
Sbjct: 288 RHNMLSSTAINKDLRTIEKTLDISPAITFHGLRHTHVSYLIANHVDINYISRRLGHANTM 347

Query: 294 TTQ-IYTNVNSKNGGDWMME 312
            TQ +Y ++      + + +
Sbjct: 348 ITQKVYAHLLEDQRKEQVSQ 367


>gi|89147528|gb|ABD62624.1| integrase [uncultured bacterium]
          Length = 163

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/111 (32%), Positives = 55/111 (49%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +G G+      L    + A   +     F        P    +R   L+  + QR ++  
Sbjct: 52  KGYGEVYLPYALDRKYKNAARGFAWQYLFPAPKLSVDPRSGKVRRHHLSEQIVQRAVKAA 111

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            R  G+  + + H+ RHSFATHLL NG D+R++Q +LGH  + TT IYT+V
Sbjct: 112 LRTAGVRKNGSCHSFRHSFATHLLENGYDIRTVQELLGHKDVRTTMIYTHV 162


>gi|281424827|ref|ZP_06255740.1| integrase [Prevotella oris F0302]
 gi|299142376|ref|ZP_07035508.1| integrase [Prevotella oris C735]
 gi|281401197|gb|EFB32028.1| integrase [Prevotella oris F0302]
 gi|298576098|gb|EFI47972.1| integrase [Prevotella oris C735]
          Length = 409

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 110/289 (38%), Gaps = 29/289 (10%)

Query: 35  TLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
           ++ +Y    ++   F+   Y    +    + +    E++AF            +  R  +
Sbjct: 133 SMSAYHSTRKRLQEFIQKKYHVSDLAFSQLTENFIYELQAF--CLSELGHQQSTFFRVAA 190

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            +K+  +   +  +        +   +     P+AL+++     +D + +    E +   
Sbjct: 191 DLKTVCRLAYREGLADTLLFDKVHIERGDKKAPKALDQEA----LDKLKVLRFDELEEEM 246

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRI---QGKGDKIRIVPLLPSVRKA 209
                +       G    + + L+ ++++ DD  +L +   + K   +  + LLP   + 
Sbjct: 247 ETARDVFLFACYTGAAYCDLMELSKKHLVRDDNGSLWLKFNRQKTGVLCRIKLLPEAVRL 306

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           I + Y      L   I+ P              +Q  ++ LR   G+    T HT RH+F
Sbjct: 307 IEKMYGDEREALLPFIKYP-------------TYQSCLKALRLRAGISFPFTTHTARHTF 353

Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           AT + L  G  + ++  +LGH  +S T+ Y  V  +     + E +D+ 
Sbjct: 354 ATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQ----KLFEEFDRF 398


>gi|262381530|ref|ZP_06074668.1| transposase [Bacteroides sp. 2_1_33B]
 gi|262296707|gb|EEY84637.1| transposase [Bacteroides sp. 2_1_33B]
          Length = 403

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 53/284 (18%), Positives = 104/284 (36%), Gaps = 29/284 (10%)

Query: 35  TLQSY-ECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEIRAF-ISKRRTQKIGDRSLKR 90
           T ++Y   +  +    LA Y  +K  ++ I  R+++   I  F +  R        +  +
Sbjct: 129 TQKTYTRYELTK--NRLAEYIHDKYNVEDITFREINVVFIEGFYLFIRENYPCTHNTAMK 186

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +   ++ + +     + T +     + LK        L + +    +D +   T    +
Sbjct: 187 FIQRFRTVVLFAHNLGLITFNPFGAYK-LKFEYVERDFLEQAE----LDRIYQKTFASKR 241

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKGDKIRIVPLLPSV 206
               R+  I       GL   +   LTP+N       +   ++ + K      + LL   
Sbjct: 242 LEQVRDIFIFSC--YTGLSYVDVCELTPENIKLSFDGNLWIIKKRHKTSVTSNIRLLDIP 299

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           +  + +Y               L  G     ++      Y++++    G+    T H  R
Sbjct: 300 KSILQKY------------DGKLPNGKLLPVISNQKMNDYLKEIATVCGINKRITFHVAR 347

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           HSFAT  +S G  + S+  +LGH  + TTQIY  +      + M
Sbjct: 348 HSFATLSISYGVPIESVSKMLGHTNIRTTQIYAKIIDTKLSEDM 391


>gi|258538870|ref|YP_003173369.1| phage-related integrase [Lactobacillus rhamnosus Lc 705]
 gi|257150546|emb|CAR89518.1| Phage-related integrase [Lactobacillus rhamnosus Lc 705]
          Length = 383

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 57/309 (18%), Positives = 115/309 (37%), Gaps = 40/309 (12%)

Query: 33  KLTLQ--SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           K T++  +YE    Q    +  +       + I +++  +++  +++   Q    R+ +R
Sbjct: 81  KNTVRESTYERTYIQ----IKKHVLPLFGNKPINKITTAQLQQAVNQWSKQ--VTRNYRR 134

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA---LNEKQALTLVDNVLLHTSH 147
            L+     L++  +R    ++    +   K+   +        +KQ LT   + +     
Sbjct: 135 WLTTASRILRFALRRGYINKNPADLVIIPKEKEQIGDVAANFWDKQELTRFFSYIDAKQE 194

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK-------------- 193
             K      +A+  +L   GLR  E L+LT ++I    ST+ +                 
Sbjct: 195 PQK------TALFRILAFGGLRRGECLALTWKDISFTDSTITVNKTLSQGMNGRQLVQPP 248

Query: 194 --GDKIRIVPLLPSVRKAILEYYD---LCPFDLNLNIQLP---LFRGIRGKPLNPGVFQR 245
                 R + +      A+  +          L  N   P   +F   + K L       
Sbjct: 249 KTRKSRRTITMDSKTMSALKHWRLVQLQKYMALGFNANKPDQLVFSNSKNKHLLLHKPAD 308

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
           +++ +     +    T H  RHS A+ L S G  ++ +Q  LGH  + TT  IYT+V   
Sbjct: 309 WLKSIEDTHKIEHRITIHGFRHSHASALFSAGATVKEVQERLGHSDVKTTLNIYTHVTKN 368

Query: 305 NGGDWMMEI 313
              + + ++
Sbjct: 369 QNKEAVNKL 377


>gi|73663256|ref|YP_302037.1| integrase [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|72495771|dbj|BAE19092.1| integrase [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
          Length = 349

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/280 (17%), Positives = 110/280 (39%), Gaps = 27/280 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR--S 87
            +S+ T + YE   +        + ++    + ++ +  TE + F+       +     +
Sbjct: 76  HVSESTKRHYESAYK--------HIKDHFRHKLLKDIKRTEYQKFL---NEYGLTHSYET 124

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           +++  S I++            ++        K           ++   + ++      H
Sbjct: 125 IRKLNSYIRNAFDDAIHEGYVIKNPTY-----KAELHASVPAKTEEMKFINESEFKKLKH 179

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK--IRIVPLLPS 205
             +  +  +S +L +    G R SE   L  +++    + + ++G   +   RI+ +   
Sbjct: 180 YFEQKNTTSSLVLLVALTTGGRFSEIAKLKREDLDIKNNKIHLRGTKTETSDRIISIDTV 239

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
             K I  + D  P     NI   +F  + GK +      + +R+    L +    T H+L
Sbjct: 240 TMKRIQSFIDSRP----TNISGYIF-TVDGKTITNAAVNKVLRKACANLNI-KEITIHSL 293

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           RHSF + L+ +G  +  I   LGH   +TTQ IY+++  +
Sbjct: 294 RHSFCSILIHHGFSILYISKHLGHSNPATTQSIYSHLLQE 333


>gi|288925733|ref|ZP_06419664.1| integrase [Prevotella buccae D17]
 gi|288337388|gb|EFC75743.1| integrase [Prevotella buccae D17]
          Length = 407

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 99/277 (35%), Gaps = 24/277 (8%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102
            + F  F+     +       R LS+  +  F         G+  ++      K  + Y 
Sbjct: 141 LKNFQDFIVGDYPQFANRIEPRNLSHDMMEQFARYLENVHTGEG-VRTYWQRFKRLINYA 199

Query: 103 KKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
            ++++  +S  L ++ + K + L +  L+ ++   L        +H     +    A   
Sbjct: 200 VEKEVIKKSPCLKIKIMNKGDILNKDILSREELQKLF------ATHYPNESEVVRRAFAV 253

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTL-----RIQGKGDKIRIVPLLPSVRKAILEYYDL 216
             +  G+R  +  +LT   I      +     ++Q   +   +   L     AI+     
Sbjct: 254 TCF-TGIRHCDLATLTYGCIDYSNKIMTFRQSKVQHDSNVSGVSIPLNDTLVAIIGEKPE 312

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
              D +L   LP   G            + +R   +  G+    T H  RHSFAT+LLS 
Sbjct: 313 GAKDSDLIFALPSIEGS----------NKVLRHWIKRAGIDKHITWHCGRHSFATNLLST 362

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           G +++ +  +LGH  L  TQ Y           +  +
Sbjct: 363 GANIKVVSELLGHSSLKFTQKYVRALDDQKKAAINSL 399


>gi|239905519|ref|YP_002952258.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239795383|dbj|BAH74372.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 362

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 107/277 (38%), Gaps = 27/277 (9%)

Query: 41  CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLK 100
              ++  + +  +       + + ++ + EI   I K    +    +  R LS +K   +
Sbjct: 85  RWIKELAVLVKTHFIPAFAQRPVDEIRFEEIVEIIGKVYADR-SQTTRSRYLSYLKMVFQ 143

Query: 101 YLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
           Y    ++TT++ +   +  K        L     + + +    H +             +
Sbjct: 144 YGVDYELTTKNPLKRWKKPK-ERPRDTKLTYTDLMKIKELARPHLAWA-----------I 191

Query: 161 YLLYGCGLRI--SEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLC 217
            + +  G+R   SE L+LT  +I  D S++++   K    R++P+ P     +       
Sbjct: 192 EVAWNLGVRTGESELLALTWNDIDWDDSSIKVYATKTKTTRVIPIAPEFLDRLQ------ 245

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
              +    Q       +GKPL    F+R ++      GL      + +RH FAT LL  G
Sbjct: 246 --LMREKAQTGYIIEYQGKPL--RKFRRSLKTAAEKAGLTYPVVMYDIRHLFATTLLREG 301

Query: 278 GDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           GD+ ++  ++GH  +  T   Y ++        + ++
Sbjct: 302 GDVAAVSKLMGHASVKMTVDQYYHLLGGEKRRTIAKL 338


>gi|109898162|ref|YP_661417.1| integron integrase [Pseudoalteromonas atlantica T6c]
 gi|109700443|gb|ABG40363.1| integron integrase [Pseudoalteromonas atlantica T6c]
          Length = 279

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/285 (18%), Positives = 103/285 (36%), Gaps = 61/285 (21%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSL 88
             SK T+++Y      ++ F        +  +        E+ AF+S    +  +   + 
Sbjct: 5   RYSKRTIEAYLKWISSYIHFHQKKHPNLMHDK--------EVEAFLSHLVLELDVAASTQ 56

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           K +L+ +    + + ++ +   +  LN     +   LP  L   +   L+  V       
Sbjct: 57  KSALNALVFLYRDIIRQPL---NFKLNFIKSTRQQKLPIVLTTDEVRNLLAVVSAQQ--- 110

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR 207
                      + +LY  GLR+ E + L  Q+I  D  ++R+  G+G K RIV L   + 
Sbjct: 111 --------KLAVSILYANGLRLMECVRLRVQDIDFDFKSVRVWNGEGGKHRIVTLADELI 162

Query: 208 KAILEYYDLCPFDLNLNIQLPLF------------------------------------- 230
            ++ +   +    L+ ++  P +                                     
Sbjct: 163 PSLQQQITVVRQYLDADLLNPEYDGVYLPHRLRLKFKNANRSLPWQYVFASRQLSTDPED 222

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
           + +R   ++    Q+ IR   +   +P   T HTLRHSF   +L+
Sbjct: 223 QSLRRHHIDGSTVQKVIRHAAKKANIPKIVTPHTLRHSFKKCVLA 267


>gi|242373385|ref|ZP_04818959.1| bacteriophage integrase [Staphylococcus epidermidis M23864:W1]
 gi|242348748|gb|EES40350.1| bacteriophage integrase [Staphylococcus epidermidis M23864:W1]
          Length = 348

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 55/298 (18%), Positives = 111/298 (37%), Gaps = 36/298 (12%)

Query: 21  WLQNLEIERGLSKLTLQ---SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +L+ L +  G  KL+++    YE     FL               I+ ++  E + F++ 
Sbjct: 69  YLEWL-VANGKDKLSIKQQYWYEHSLDLFLDHFGEDIM-------IKHITRNEYQKFLTN 120

Query: 78  RRTQKIGD--RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLP-RALNEK 132
               +  +  R +   LS   + LK        T+    N++    K +     + L  +
Sbjct: 121 FANGRTSETVRKVNLFLS---NCLKDAVYDGYLTKDPTYNVKAKGTKSAKKEDVKFLTIE 177

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q   L +   L +   +         +L++L   G R SE   +T  +++   + + + G
Sbjct: 178 QYEGLREYFKLKSDKSS--------IMLFILLITGGRFSEVNRMTYDDLIYQDNAIHLPG 229

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
                    +   V K+ L Y               +F       L+     +  R+ + 
Sbjct: 230 TKTVTSDRIV--EVSKSDLLYIKSALLHHPRRRDNIIFN------LSHNAISKVFRKAKG 281

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDW 309
              +    T ++LRH+ A++LLS G  +  I   LGH  +  T  +YT++  ++  + 
Sbjct: 282 KFEIDNEVTPYSLRHTHASYLLSKGIPIEYISKRLGHSNIGITLDVYTHLLDEHKKEQ 339


>gi|329723861|gb|EGG60388.1| site-specific recombinase, phage integrase family [Staphylococcus
           epidermidis VCU144]
          Length = 405

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 63/336 (18%), Positives = 117/336 (34%), Gaps = 37/336 (11%)

Query: 11  SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70
           S         WL+  +   G    T++    +T      +    ++++ I  I      +
Sbjct: 69  SLTFHAACDEWLEYYKNHSGSKATTIKEKISNTNT----VKNAIDKEVLINNITHTYLQD 124

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR--- 127
           I    +K  ++      +    S  K   KY   + I+    I   +  K  + L     
Sbjct: 125 IINEWAKLHSKGHVQSLVIIIRSVFKYAFKYYDLQDISVLDKIDIPKKAKTRDELQAKRN 184

Query: 128 -ALNEKQALTLVDNVLLHTSHETKWIDARNS----AILYLLYGCGLRISEALSLTPQNIM 182
             L E +   L+        H+      RN     AI+      G RI E L++   NI 
Sbjct: 185 NYLEESEVKELLSCFDYLIKHKKHSTRKRNYKMVKAIVQFQIANGTRIGELLAIKSDNIN 244

Query: 183 DDQSTLRIQGKGDKIRIV------------------------PLLPSVRKAILEYYDLCP 218
            +  TL I G  + +                             +  ++  IL+      
Sbjct: 245 YEDKTLDIDGTINWVTDKETGTFGVKETTKTSKSYRTIGLTTQSINLLKTLILDNKKENQ 304

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
           ++ +   +  +F    G P++       I++      +    T HTLRH+  + L   G 
Sbjct: 305 WNEDFIDRSYIFTNTAGSPIDLNKINNIIKEATDISSIKKRVTTHTLRHTHISTLAQLGI 364

Query: 279 DLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           +L++IQ  +GH    TT +IYT+V  +   + M ++
Sbjct: 365 NLKAIQERVGHSDYKTTLEIYTHVTDQMAKNMMKKL 400


>gi|265755606|ref|ZP_06090227.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263234212|gb|EEZ19805.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 386

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 105/275 (38%), Gaps = 25/275 (9%)

Query: 48  IFLAFYTEEKITIQTIR--QLSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKK 104
             L+ Y ++K+  + I    L    I+ + +     + +   +    ++ +K  +     
Sbjct: 117 RCLSCYLKDKLGTEDIPLMSLDMDFIKDYYNWMLSVRGLAKSTAFERVNTLKWLMYLAMD 176

Query: 105 RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLY 164
                +          +    P  L+E+    ++   L +   +          +   + 
Sbjct: 177 EGWIHKHPFKKFVCKPEYKKRP-FLSEEDLQRVISVKLSYKRQQAI------RDMFVFMC 229

Query: 165 GCGLRISEALSLTPQ--NIMDDQSTLRI--QGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
             GL  ++   L+ +  +   D +T  +  + K     +V LLP   + I +Y  +    
Sbjct: 230 FSGLAHADLKELSYRNVHTDSDGNTWLVGNRVKTKAAYVVKLLPIAVELIEKYRGVNESK 289

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
           ++ +   P+         + G  +  ++++    G  +  + H  RH+FAT  L+ G  L
Sbjct: 290 VSPDRVFPVG--------DVGSMESSLKRIGEKAGCSVRVSPHVGRHTFATLALNKGMPL 341

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGG---DWMME 312
            ++Q +LGH  + +TQ+Y  + +   G   D M E
Sbjct: 342 ETLQKVLGHKTIISTQVYAELINPKIGEDTDRMRE 376


>gi|254466302|ref|ZP_05079713.1| site-specific recombinase, phage integrase family protein
           [Rhodobacterales bacterium Y4I]
 gi|206687210|gb|EDZ47692.1| site-specific recombinase, phage integrase family protein
           [Rhodobacterales bacterium Y4I]
          Length = 367

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 59/311 (18%), Positives = 113/311 (36%), Gaps = 42/311 (13%)

Query: 11  SFELLKERQNWLQNLEIE----RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           S  + +  Q+WL + E+     R + + TL+ Y    R  +        +++    I QL
Sbjct: 60  SITVAEAAQSWLDHCEVRCKTGRRMERSTLRGYSDYVRLHIKNAEIGIGDRL----IAQL 115

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--- 123
           +   +  F  +       +   +R++S +K  L +         +    +R +K S    
Sbjct: 116 TRRHVNEFRDRLLLNGRSEHLTRRAISVLKLILDHAIDNGQLFTNAAHGVRIIKSSRIDH 175

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
             P   +++    L++      + E        SA+       GLR SE   L  Q++  
Sbjct: 176 KAPVP-SKEMIRALIE-----AADEDFKPHLIVSAL------GGLRASELRGLRWQDVDF 223

Query: 184 DQSTLRIQ------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           D+  + I+                  R +P  P V  A+  +   CP     +    +F 
Sbjct: 224 DKGFIYIRQRADAYNKMGEPKSRAGYRDIPAGPMVLNALRRWKLRCP----KSDLGLVFP 279

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
             RG  L     Q   R+L+  + + +    H LRH   +  +  G  ++ I +  GH  
Sbjct: 280 APRGGILQHTNTQARFRKLQEKVEVTMR--WHDLRHFAVSLWIEQGFSIKEIMTFAGHSS 337

Query: 292 LSTTQ-IYTNV 301
           +  T   Y ++
Sbjct: 338 IQMTMERYGHL 348


>gi|94442272|dbj|BAE93635.1| integron integrase [uncultured bacterium]
          Length = 162

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 52/112 (46%)

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + G G+      L      A   +     F  N     P    ++   ++    Q+ I++
Sbjct: 50  VDGYGETTLPYALARKYPSAAKSWMWYYAFPSNQRCFAPDLGTMKRHHVHQTSVQKAIKR 109

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                 +     +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 110 AVTRCNINKRVGSHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|237719564|ref|ZP_04550045.1| integrase [Bacteroides sp. 2_2_4]
 gi|253565904|ref|ZP_04843358.1| integrase [Bacteroides sp. 3_2_5]
 gi|254882935|ref|ZP_05255645.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|282859997|ref|ZP_06269081.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282877475|ref|ZP_06286295.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|282880866|ref|ZP_06289559.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|294777530|ref|ZP_06742981.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|301312112|ref|ZP_07218033.1| mobilizable transposon, int protein [Bacteroides sp. 20_3]
 gi|304382591|ref|ZP_07365085.1| integrase [Prevotella marshii DSM 16973]
 gi|317478196|ref|ZP_07937364.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|317504497|ref|ZP_07962474.1| mobilizable transposon integrase [Prevotella salivae DSM 15606]
 gi|5453489|gb|AAB53787.2| integrase [Bacteroides fragilis]
 gi|229451424|gb|EEO57215.1| integrase [Bacteroides sp. 2_2_4]
 gi|251945008|gb|EES85446.1| integrase [Bacteroides sp. 3_2_5]
 gi|254835728|gb|EET16037.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|281300399|gb|EFA92748.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281305248|gb|EFA97315.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|282587203|gb|EFB92424.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|294448598|gb|EFG17147.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|300829900|gb|EFK60549.1| mobilizable transposon, int protein [Bacteroides sp. 20_3]
 gi|304336216|gb|EFM02458.1| integrase [Prevotella marshii DSM 16973]
 gi|315664395|gb|EFV04085.1| mobilizable transposon integrase [Prevotella salivae DSM 15606]
 gi|316905648|gb|EFV27434.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 372

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 59/317 (18%), Positives = 115/317 (36%), Gaps = 49/317 (15%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L      +GL+      ++   + F  F+           T  ++     R F+    
Sbjct: 95  DFLAYF---KGLADRKNIKWQHVYKHFQRFVNGKC-------TFEEVDVDLCRKFMEYLL 144

Query: 80  T--------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
                    QK+   S     S  ++ L    + +   E+    +  ++   ++   L++
Sbjct: 145 DAPQSIHTNQKLHINSAAGYWSTFRAVLHTAYRDRKIKENPNGFLDRIECIPTIREHLSQ 204

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTLRI 190
           ++ + L          ET   +             GLR S+   LT Q I       + +
Sbjct: 205 EELIRL---------AETPCEEEVLKKAFLFACLTGLRKSDIRQLTWQQIQPYTNGRMFV 255

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
             +  K + +   P   +A           L    +  +F   + K L     Q  +++ 
Sbjct: 256 TTRMQKTKEIVHNPISDEA--------YGLLGERGEGLIFEDFKDKML-----QGPLQRW 302

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+    T H  RHSF +  +  G D+  IQ+ LGH  ++TTQIY+ + ++     M
Sbjct: 303 LTAAGITKKITFHCTRHSFGSLHVEMGTDMAVIQAYLGHKNITTTQIYSKIAAQQ----M 358

Query: 311 MEIYDQTHPSITQKDKK 327
            ++ D+    IT K K+
Sbjct: 359 CQVVDK----ITLKRKE 371


>gi|238784932|ref|ZP_04628931.1| Integrase [Yersinia bercovieri ATCC 43970]
 gi|238714147|gb|EEQ06160.1| Integrase [Yersinia bercovieri ATCC 43970]
          Length = 342

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 92/251 (36%), Gaps = 36/251 (14%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILNMRNLKKSNSLPRALNEK 132
           + S++  +     ++    S +      L +       + + N+R    +      L  +
Sbjct: 119 YFSEKWKKGAKPVTVNLEQSFLSGMFSELARLGEWNLPNPLDNLRKYAVAEKEMAWLTHE 178

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q  TL+    L  +            ++ +    G R +EA  LT   +  ++ T  I+ 
Sbjct: 179 QIKTLLAACSLGRADLP--------MVVKVCLSTGARWNEAEKLTRSQVSPNKITF-IRT 229

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-R 251
           KG K R VP+   +   +                      + G  L    + R++  +  
Sbjct: 230 KGKKNRSVPISKELHDEL--------------------VALEGDRLFSECYFRFMAAINT 269

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             + LP     H LRH+FA H + +GG++  +Q ILGH  +  T  Y +   ++    + 
Sbjct: 270 TDIKLPTGQLTHVLRHTFAAHFMMSGGNILVLQRILGHSDIQMTMRYAHFAPEHLETAV- 328

Query: 312 EIYDQTHPSIT 322
               Q +P  T
Sbjct: 329 ----QFNPLAT 335


>gi|225219826|gb|ACN85417.1| IntI1 [Pseudomonas aeruginosa]
          Length = 164

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 76/183 (41%), Gaps = 27/183 (14%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVNWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QST 187
             T
Sbjct: 162 HGT 164


>gi|315441525|ref|YP_004074402.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315445671|ref|YP_004078550.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315445686|ref|YP_004078565.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315445692|ref|YP_004078571.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315446114|ref|YP_004078993.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315263974|gb|ADU00716.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315263989|gb|ADU00731.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315263995|gb|ADU00737.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315264417|gb|ADU01159.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315265180|gb|ADU01921.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
          Length = 637

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 61/315 (19%), Positives = 110/315 (34%), Gaps = 35/315 (11%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT-EIRAFISKRRTQKIG----DRS 87
             T+ S       F  +LA       ++ ++ QL     I  FI+   T          +
Sbjct: 231 PKTVSSLATRLAHFGRYLAAADP---SLTSLNQLDRRRHIEPFITSLTTATNSVTGEPIT 287

Query: 88  LK---RSLSGIKSFLKYLKKRKITTESN---ILNMRNLKKSNSLPRALNEKQALTLVDNV 141
           +    R +  + +FL  + +           I      +    LPR L         D  
Sbjct: 288 VADRIRRIHAVGNFLAEITEWGWDDAPPRRLIFRTDLPRPPRCLPRYLPVD-----SDRK 342

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD---DQSTLRIQ-GKGDKI 197
           L     ++ +  A ++ ++     CGLRI E L L    I +     S L++  GK +  
Sbjct: 343 LTAALAKSPYRLAADALLVQ--RACGLRIGELLDLELDCIHEIPGQGSWLKVPLGKLNSE 400

Query: 198 RIVPLLPSVRKAILEYYDLC------PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           R++P+   V   +                        LF    GK L+    +  + +  
Sbjct: 401 RMIPVNDEVLTLVDRITTTRSSGRPMIHPRTGAPADFLF-THHGKRLSQNAVREELNRAA 459

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +   L    T H LRH++AT L++ G  L+++ ++LGH     +  Y ++          
Sbjct: 460 QAASLG-HITPHQLRHTYATALINAGVSLQALMALLGHVSTQMSLRYAHLFDHTVRTEYE 518

Query: 312 EIYD--QTHPSITQK 324
              D  ++H     K
Sbjct: 519 RALDLAKSHIGALPK 533


>gi|138897051|ref|YP_001127504.1| transposition regulatory protein TnpB [Geobacillus
           thermodenitrificans NG80-2]
 gi|134268564|gb|ABO68759.1| Transposition regulatory protein TnpB [Geobacillus
           thermodenitrificans NG80-2]
          Length = 704

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 55/327 (16%), Positives = 111/327 (33%), Gaps = 48/327 (14%)

Query: 28  ERGLSKL-----TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           +R LSK      T ++Y      F+ F+      + T   ++QL    +  +I   R   
Sbjct: 242 QRLLSKNNFTWGTARNYMFCLPPFIKFIFSL---EPTWNDLKQLKRFHMEQYIQWLREYT 298

Query: 83  IGD---------RSLKRSLSGIKSFL----KYLKKRKITTESNILNM----RNLKKSNSL 125
                       R +  SL+ I+ FL    +Y     I  E+ +  +       K+    
Sbjct: 299 KKHLKQKNANPERYISESLTTIQKFLGDIQRYEY--DIAPETPVKLLIFPEDKPKQKKK- 355

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
               +  +   + D VL         +      ++++ +  GLRIS+ L L    ++   
Sbjct: 356 ----SIDRIDYIPDYVLEQLFAHINDLCKDVQPVIWVAFKTGLRISDVLGLKQDCLVKLN 411

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYY------DLCPFDLNLNIQLPLFR----GIRG 235
               I+   +K  +      +   +           +   + + N +  +F       +G
Sbjct: 412 GKYYIETDIEKTYVQGHRVPIDDELANILAVLIDKSIKNSNDDNNPEKYIFVRYHGSRKG 471

Query: 236 KPLNPGVFQRYIRQLRRYLGLP------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           KP +    +  +  L +   +            H  RH++A  +L++G D+ ++Q +L H
Sbjct: 472 KPYSQHWVKEKLNLLAKTKHITDENGHVFHFKTHQFRHTYAVKMLNSGADILTVQELLAH 531

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
                T  Y  +          E   Q
Sbjct: 532 ASPEMTMRYAKLLDNTKRKAFEEAIKQ 558


>gi|196247965|ref|ZP_03146667.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|196212749|gb|EDY07506.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 384

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/290 (16%), Positives = 101/290 (34%), Gaps = 38/290 (13%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           + I +++  +I +F   +         +++  + +        K  +   + + N +  K
Sbjct: 107 KKINEITTFDIDSFYVDKLDTGYSGAYIRQMHNLLNQAFDQAVKWSLVKVNPVKNAKPPK 166

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
             +         +    + N++  +S E  ++         L    G+R  E L L   +
Sbjct: 167 VKSEEKITWTVDEVNRFL-NLIKDSSMEIPYL---------LAIFTGMRRGEVLGLKWDD 216

Query: 181 IMDDQSTLRIQ----------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL- 223
           +  +   +RI+                      R + +   V   + ++     F     
Sbjct: 217 VDFENKKIRIKRSLCFVSGKGLIFKEPKTKKSKRQISISQHVVNVLKKHKQKQEFQKEKL 276

Query: 224 ----NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
                    +     GKPL+P    R   +L     +P   + H LRH+ AT L+  G +
Sbjct: 277 GVQYQDNNLIVCTDDGKPLDPRNLLRQFYRLIEEANVPR-ISFHDLRHTHATILMQQGEN 335

Query: 280 LRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
            + +   LGH R+  T  +Y++V+     D + E   +   +   K  +N
Sbjct: 336 PKVVSERLGHSRVGITLDLYSHVS-----DDLQEQAAEKFENALLKQSQN 380


>gi|295104858|emb|CBL02402.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 329

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 107/281 (38%), Gaps = 17/281 (6%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           R LS  T+ +YE D +Q++I    Y  +      + +L   +I  F+   +        +
Sbjct: 37  RDLSPSTVYNYESDFKQWMI----YVLDNQGNAPVTELEEEDIEEFLFYCKKHGNNSARM 92

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR--ALNEKQALTLVDNVLLHTS 146
           KR +S I +  +YL+K+KI  E+ +  +    K  ++ +   L   +   L+   L    
Sbjct: 93  KRRMSTISALYRYLRKKKIIKENPMEFIDRPTKDVAVVKQTYLTPDEV-KLMREKLNTLV 151

Query: 147 HETKWIDARNSAILYLLYG-----CGLRISEALSLTPQNIMDDQSTLR----IQGKGDKI 197
                +  +++A+   LY         R++   +   ++I  +   +      +GK   +
Sbjct: 152 ESATTVHMKDNAMTLRLYALFSLSTMARVNAVRNTLWKSIDYENRMVHDVLEKEGKIVDL 211

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
                +  + K + EY      +    + +         P+       + +++   +   
Sbjct: 212 MFSKEVSELLKELKEYRTEHDIEDGGYVFVGTKINGVWMPITSSTAGDWCKKIGEMID-E 270

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            +   H  RHS AT L + G  L  + S+L H     T  Y
Sbjct: 271 PTLHPHDFRHSGATLLKNAGMSLEDVSSLLNHAGTDVTNKY 311


>gi|298206679|ref|YP_003714858.1| tyrosine type site-specific recombinase [Croceibacter atlanticus
           HTCC2559]
 gi|83849310|gb|EAP87178.1| tyrosine type site-specific recombinase [Croceibacter atlanticus
           HTCC2559]
          Length = 405

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 108/291 (37%), Gaps = 24/291 (8%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLS 93
           T +SY+ +  +F  F+               ++ T ++ + S   ++    + ++  +  
Sbjct: 123 TYRSYKNNIEKFERFVGHRELM------FDDITATTLKNYASYCSSKLGNNNTTINYAFR 176

Query: 94  GIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
            +    +  K+  + +   +     + +KK+ +  R LN +Q    ++   L    + K 
Sbjct: 177 ILNLMFREAKREDLISNELAPFTKFK-VKKNKTTKRYLNAEQFDAFMN---LEVPDKHKA 232

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-RIQGKGDKIRIVPLLPSVRKAI 210
              ++  I  + +  GLR  + + L  +N       + +   K  +   + +       +
Sbjct: 233 QVIKDMFIFSV-FSGGLRFGDVIELQWKNYDKKNHRITKTIRKTKRQHSIRIGQKAIDIL 291

Query: 211 LEY------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVF---QRYIRQLRRYLGLPLSTT 261
            +Y       +   F      +           +          Y+ ++ + L LP + +
Sbjct: 292 EKYASYDNSQNDIIFPFAKIDEQYFKDREHRSLITNRAISLSNMYLSRMGKQLELPFNLS 351

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            H  RH+FAT  L+NG  +  +  ++ H  +  TQ+Y  + S    + + +
Sbjct: 352 FHISRHTFATRALNNGMRIEHVSKLMDHTDIGITQVYAKIISSELDNAVDK 402


>gi|299142946|ref|ZP_07036072.1| integrase [Prevotella oris C735]
 gi|298575562|gb|EFI47442.1| integrase [Prevotella oris C735]
          Length = 422

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 58/319 (18%), Positives = 125/319 (39%), Gaps = 40/319 (12%)

Query: 14  LLKERQNWLQNLEIERG------LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR--Q 65
           LL+E Q +++    E+       ++K T  +Y   T+     +  Y  E++ ++ IR   
Sbjct: 110 LLEEAQLFIE----EKRPCVGITVAKPTFANYIYATQ----LIEAYLRERLGLEDIRYSS 161

Query: 66  LSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L Y  I       ++++ +   +++  +  ++  +   +++K        + +  +  + 
Sbjct: 162 LDYGFIEGMDFYLKSERNLSLATIQIVVIFLRKLIGIGQQKKYIRIDPFADYKA-ELPHR 220

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-- 182
             R L  ++   ++   ++    E          +       GL   +   L P++I+  
Sbjct: 221 TRRYLTTEELQRVLQTPIIDRQFERA------RQLFLFCAFTGLARVDMQRLKPKHIIRN 274

Query: 183 -DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
            D  + +RI + K +   I+PLLP   + +  Y        +      +F       L  
Sbjct: 275 ADGTAEIRIKRQKTNVEAIIPLLPIANQILSLYI------KDKKADELIFPN-----LTI 323

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYT 299
                    + +   +    T H  RH+F+T   LSNG  + ++  +LGH  + TTQIY 
Sbjct: 324 RKASFACVNIGQICRIEKGLTFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYG 383

Query: 300 NVNSKNGGDWMMEIYDQTH 318
            +      + M  + D+ H
Sbjct: 384 KITDHKIQEDMTALTDREH 402


>gi|237744359|ref|ZP_04574840.1| phage integrase [Fusobacterium sp. 7_1]
 gi|229431588|gb|EEO41800.1| phage integrase [Fusobacterium sp. 7_1]
          Length = 353

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 91/266 (34%), Gaps = 38/266 (14%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           I  ++  ++  F +    +K    S++   + +K    +  + K    +    +  LK  
Sbjct: 100 ISDITAIQVSNFQNDLL-KKYKGSSIRTINAYVKMLFTWCVRYKNLASNPFDMVDRLKLE 158

Query: 123 -NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
                  +   +   ++  V           +     +  LL+  GLRI EA +L   +I
Sbjct: 159 TKKRMDIITVDEFNQIIKQV----------NNPDMKLMFKLLFWTGLRIGEARALKIDDI 208

Query: 182 MDDQSTLRIQG---------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
             +  T+ +                     IR++ +   +   I +Y D   + L  N  
Sbjct: 209 DFNNKTISVTKSYTHLSGKSIITTPKTKGSIRVIKIDDVLLSEIKDYIDKASYILEDNF- 267

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
                       N   ++   +     + L      H LRHS A+ L++NG D+  I   
Sbjct: 268 --------IFRFNKASYRYNFKNATIKV-LGRDLRVHDLRHSHASFLINNGVDILLISKR 318

Query: 287 LGHFRLSTT-QIYTNVNSKNGGDWMM 311
           L H   + T  +Y+++      + + 
Sbjct: 319 LEHSNTAMTLNVYSHLYPDKESEAIK 344


>gi|229492025|ref|ZP_04385839.1| phage integrase family protein [Rhodococcus erythropolis SK121]
 gi|229321049|gb|EEN86856.1| phage integrase family protein [Rhodococcus erythropolis SK121]
          Length = 246

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 81/224 (36%), Gaps = 21/224 (9%)

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW-IDARNSA 158
           ++   R +  +S  L +               ++     + +        K+   AR+ A
Sbjct: 19  EFNASRHVGDDSPAL-VPPP----------TPERVREFFEFMKARIITARKYGPAARDYA 67

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
           +   LY  GLR  EA  L   ++  D+     L ++         P    V         
Sbjct: 68  LFRTLYHAGLRSEEAALLDLPDVHFDRGPFGKLHVRFGKGARMSGPRPRWVPMLDGLDLV 127

Query: 216 LCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL--STTAHTLRHSF 269
           L  F  ++  + P    LF    G PL+ G  +  +R L    G P     + H LR + 
Sbjct: 128 LRWFLTDVRPKFPDSPVLFADESGGPLHRGTIRNRLRYLMELEGRPRSERFSPHALRRAC 187

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           ATH    G DL +IQ +LGH+ + +T  Y   ++    D     
Sbjct: 188 ATHNYERGVDLVAIQQLLGHWTVGSTMRYVRPSATFIEDAYRRA 231


>gi|167829962|ref|ZP_02461433.1| phage integrase family protein [Burkholderia pseudomallei 9]
 gi|226199441|ref|ZP_03794999.1| phage integrase family protein [Burkholderia pseudomallei Pakistan
           9]
 gi|225928517|gb|EEH24546.1| phage integrase family protein [Burkholderia pseudomallei Pakistan
           9]
          Length = 350

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 97/255 (38%), Gaps = 12/255 (4%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT--TESNILNMRNL 119
           ++  ++   +  +   R  Q   + +++  L+ +        K        + + N+R  
Sbjct: 99  SLAAVTPDLVGRYRDDRLAQGKANNTVRLELALLGHLFNVAIKEWHIGLVYNPVANIRKP 158

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           +      R L+ ++   L+  +  HT+    W       I+ L    G+R SE + L   
Sbjct: 159 RPGEGRNRRLSGREQALLLAAIDKHTNPMLGW-------IVRLAIETGMRQSEIVGLRRG 211

Query: 180 NIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
            I  ++  +R+   K +  R VPL       +          ++ ++      G  GK  
Sbjct: 212 QIDLERRVVRLTDTKNNAARTVPLTKLAASVLQSALANPIRPIDTDLVFFGEPGRDGKR- 270

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
               F +    +++  GL +    H LRH   + L+  G   + + SI GH  +   + Y
Sbjct: 271 RAYQFTKVWNAIKKQTGL-IDFRFHDLRHEAVSRLVEAGLSDQEVASISGHKSMQMLRRY 329

Query: 299 TNVNSKNGGDWMMEI 313
           T++ +++    +  I
Sbjct: 330 THLRAEDLVGKLDAI 344


>gi|329116545|ref|ZP_08245262.1| site-specific recombinase, phage integrase family [Streptococcus
           parauberis NCFD 2020]
 gi|326906950|gb|EGE53864.1| site-specific recombinase, phage integrase family [Streptococcus
           parauberis NCFD 2020]
          Length = 381

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 108/275 (39%), Gaps = 27/275 (9%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM---RNL 119
           + +LS + I+  I++   + +   ++    S  K  L+Y    ++   +   ++   + +
Sbjct: 110 LDKLSVSYIQGHINELSKEFVHFGTVH---SINKRVLQYGVSLQLIPFNPARDVILPKAV 166

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           K  N   + ++      L+  +        K+    +  +  +L   G R  EA++LT  
Sbjct: 167 KPDNKAIKFIDYDDLKALMSYM--EKLSNKKYSYYFDYVLYNILLATGCRFGEAIALTWS 224

Query: 180 NIMDDQSTLRIQGKGDK-------------IRIVPLLPSVRKAILEY---YDLCPFDLNL 223
           +I  + +T+ I    ++              R++ +       +  Y         ++  
Sbjct: 225 DIDFENATIDINKNYNRLVDIVGTPKSKAGYRVISIDQKTVNLLRLYKNRQRQLFSEVGG 284

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                +F     K  N  + Q  + +  + +G P   T H  RH+ A+ LL+ G   + +
Sbjct: 285 EAPKVVFATPTRKYQNTAIRQGSLDRRLKEIGCPR-FTFHAFRHTHASLLLNAGISYKEL 343

Query: 284 QSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQT 317
           Q  LGH  L+ T  IY++++     + +   Y++ 
Sbjct: 344 QYRLGHATLAMTMDIYSHLSKDKEKEAV-SYYEKA 377


>gi|104774036|ref|YP_619016.1| integrase/recombinase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|103423117|emb|CAI97856.1| Integrase/recombinase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
          Length = 305

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 55/281 (19%), Positives = 107/281 (38%), Gaps = 26/281 (9%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           + TL  Y    R             + +    +L Y +I    +K   +     ++    
Sbjct: 26  ERTLDKYWLSHRHLQEIA-----PNLKLVDTTRLEYQQILNTFAKTHEK----ATVMDFH 76

Query: 93  SGIKSFLKYLKKRKITTESNILNM--RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
             +K+ L          +     +  +  + S    + LNE +   L+ ++ L T     
Sbjct: 77  HQLKAMLLDAYDEGYIHKDPTRKIVVKGKEPSEKKAKYLNEFELKLLLRHLDLSTFPNFD 136

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI------RIVPLLP 204
           W       ++ L+   GLR SEAL LT ++I  +Q T+ +    D        +    + 
Sbjct: 137 W-------MILLIAKTGLRFSEALGLTKEDIDLEQQTINVDKTWDYKSYTGSFKQTKNVS 189

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           SVRK  +++      +  +            K +       ++++    L +P+  + H 
Sbjct: 190 SVRKVPIDWKLAMQLNQVIQDLPNGEPIFAQKRVFNSTVNNFLKKHCEELNIPV-ISVHG 248

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI-YTNVNSK 304
           LRH+ A+ LL  G  + S+   LGH  ++TTQ  Y ++  +
Sbjct: 249 LRHTHASLLLFAGVSIASVAKRLGHADMTTTQQTYLHIIQE 289


>gi|327252692|gb|EGE64346.1| phage integrase family protein [Escherichia coli STEC_7v]
          Length = 426

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/320 (12%), Positives = 100/320 (31%), Gaps = 53/320 (16%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT-EEKITIQTIRQLSYTEIRAFISK 77
           + +L   E E  ++K +L +Y    +  L  +        I  + + ++    +  +   
Sbjct: 86  EKFLALKETE--VAKASLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLTGYQIP 143

Query: 78  RRTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +             ++   ++ + +  ++        ++    +  LK+S ++P  L+ +
Sbjct: 144 KSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPDPLSRE 203

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + + L+D      +            +  +    G+R  E  +L  ++I     T+ I+ 
Sbjct: 204 EFIRLIDACRNQQAKN----------LWCVSVYTGIRPGELCALGWEDIDLKNGTMMIRR 253

Query: 193 KGDKIRIVPLLPSV--------------------------RKAILEYYDLCPFDLNLNIQ 226
              K R                                  ++ I++ +            
Sbjct: 254 NLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREFGRTEKQKC 313

Query: 227 LPLF-------RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
             +F           G        ++      +  GL    +  + RH++A   L+ G +
Sbjct: 314 TFVFQPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQS-RHTYACWSLTAGAN 372

Query: 280 LRSIQSILGHFRLSTT-QIY 298
              I + +GH       Q+Y
Sbjct: 373 PAFIANQMGHADAQMVFQVY 392


>gi|312973894|ref|ZP_07788065.1| phage integrase family protein [Escherichia coli 1827-70]
 gi|310331428|gb|EFP98684.1| phage integrase family protein [Escherichia coli 1827-70]
 gi|323972701|gb|EGB67903.1| phage integrase [Escherichia coli TA007]
          Length = 375

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 93/254 (36%), Gaps = 17/254 (6%)

Query: 47  LIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK 106
           L  L  Y       + +R ++  E+  + +  R +K+   ++ R L+ +        +  
Sbjct: 117 LSKLNLYVRPFWGKRQLRDITAGELEQYAAGLR-EKLRPSTVNRILAILSKICSLAVRAG 175

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
             T S + ++R LK++N   R L+  +    ++     T+ +T   D+     + L    
Sbjct: 176 WITHSPMTHVRYLKENNIRYRTLSATEIPRFIN---AATALQTPAADS-----ILLALYT 227

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G+RI E  +L  +    D   L +             P    AI          L+    
Sbjct: 228 GMRIGEVCTLKWEYWHPDMHQLILPDTKSG--HPFTCPLAPPAIAVVQCQQDLMLSKTYI 285

Query: 227 LP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
            P L    R        F R    + R   +  +   H LR +FAT +L   GD+     
Sbjct: 286 FPQLTDNARPLAYPRATFAR----ICRDANID-NLRMHDLRRTFATRVLQATGDIAIASH 340

Query: 286 ILGHFRLSTTQIYT 299
           +L H  L+ T+ Y 
Sbjct: 341 LLNHHSLTATRRYA 354


>gi|296451332|ref|ZP_06893071.1| phage integrase family site-specific recombinase [Clostridium
           difficile NAP08]
 gi|296880316|ref|ZP_06904280.1| phage integrase family site-specific recombinase [Clostridium
           difficile NAP07]
 gi|296259829|gb|EFH06685.1| phage integrase family site-specific recombinase [Clostridium
           difficile NAP08]
 gi|296428681|gb|EFH14564.1| phage integrase family site-specific recombinase [Clostridium
           difficile NAP07]
          Length = 310

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/267 (19%), Positives = 105/267 (39%), Gaps = 25/267 (9%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           L+  T   Y      F  FL          + +   +  + + F+   +T K    + ++
Sbjct: 29  LNPNTKHDYLSKVILFKEFLKG--------KELIYATKEDCKNFVDYIQT-KYAKSTCEK 79

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR--ALNEKQALTLVDNVLLHTSHE 148
             S + SF  +LKK      +    +     +    +   L+ ++   L+  +       
Sbjct: 80  IYSYLHSFYNFLKKEGYIDINPFRYVEKPTVTRIKTKDDVLSIQEINKLIGIL------- 132

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPS 205
              ++ R+  I+  L   G  ++E +SL  +++M   +D S +R+ GKG K R+V L P 
Sbjct: 133 -PKLNIRDRVIIVCLVTTGCLLNELVSLKWKDLMVDENDNSYVRL-GKGRKERVVKLHPY 190

Query: 206 VRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             K + +Y +     ++ +     +F   +   +     +  +++     GL    +A  
Sbjct: 191 FFKLLEDYRNYSGLPEVIIPSDDFIFTTQKSNSITDRNVRLIVKKALDLAGLSQY-SARD 249

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFR 291
            RHSFA   L  G D   +++ LG   
Sbjct: 250 FRHSFAAISLRLGADESDVKNQLGWSD 276


>gi|291166248|gb|EFE28294.1| transposase [Filifactor alocis ATCC 35896]
          Length = 411

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 53/317 (16%), Positives = 109/317 (34%), Gaps = 55/317 (17%)

Query: 46  FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKK 104
           ++     +  E    + I ++ Y+++  F       +++   +L+   + +    +   +
Sbjct: 94  YMYMYNHFVREGFGKKKIGEIKYSDVLYFYYDLLNNRELQVNTLETIHTVLHPTFQLAVR 153

Query: 105 RKITTESNILNM-----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
             I   +    +     +   K  ++  AL  +Q    + N +  +     W       I
Sbjct: 154 DDIIRNNPSDGVMAEIKKKNTKKKNMRHALTIEQQRAFM-NYIASSPVFVHWNP-----I 207

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK----------------------I 197
             +L G G RI E + L   +I  ++ T+ I                            +
Sbjct: 208 FTVLLGTGCRIGEVVGLRWSDIDMEKRTIDINHSMTYYPRKTDTYKCEFKVSLPKTEAGV 267

Query: 198 RIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           RI+P++  V +A+   Y+          +   +   +F    G   NP    R IR++  
Sbjct: 268 RILPMMQPVYEALETEYERQKEEGFCTAVVDGMSGFVFSNRFGMIHNPAAINRVIRRILE 327

Query: 253 YLGLPL---------------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ- 296
                                  + H LRH+F +    N  +++ IQ I+GH  + TT  
Sbjct: 328 AHNTEEIVKAKKEKREPIMIPHFSCHHLRHTFCSRFCENETNIKVIQEIMGHASIETTMD 387

Query: 297 IYTNVNSKNGGDWMMEI 313
           IY   NS    + +  +
Sbjct: 388 IYAEANSDKKKESIENL 404


>gi|227535716|ref|ZP_03965765.1| bacteriophage integrase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227186683|gb|EEI66750.1| bacteriophage integrase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 376

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 57/320 (17%), Positives = 122/320 (38%), Gaps = 35/320 (10%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L+     W++  +  +  S++T   Y+   +Q L +     E       ++ +S ++ + 
Sbjct: 63  LIDYWDKWIELYKSGKH-SRITEARYKTIRKQLLAYWGESRE-------LKSISKSDWQG 114

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNE 131
           FI++   +K    ++ +    ++S        +I   +   N+     +    + + L  
Sbjct: 115 FINEF-GKKRAKDTVSKLNGYVRSMADSAVDDQIIYTNFTHNVVLTGNEGQAGIIKYLQV 173

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           K    LV+  L    +E          I+      G R SE L LT  ++   +  + I 
Sbjct: 174 KDLRKLVNYCLEFADYE-----HIAYYIIATGALTGARYSEVLGLTWDHVDLKKRVVHIT 228

Query: 192 GKGDK--------------IRIVPLLPSVRKAIL----EYYDLCPFDLNLNIQLPLFRGI 233
              D               +R + +   +   +L    E  ++       + +  LFR I
Sbjct: 229 RTWDHRYGSGFAATKNKSSVRDIDITRELADLLLRLKKEQQEVYLAQGYRDSKQLLFRSI 288

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   L+     + +R + + L +  + T H LRH+  ++L++N  D+  I   LGH    
Sbjct: 289 RHNMLSSTAINKDLRTIEKNLDIYPAITFHGLRHTHVSYLIANHVDINYISKRLGHANTM 348

Query: 294 TTQ-IYTNVNSKNGGDWMME 312
            TQ +Y ++      + + +
Sbjct: 349 ITQKVYAHLLEDQRKEQVSQ 368


>gi|223369770|gb|ACM88755.1| integrase [uncultured bacterium]
          Length = 163

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 37/162 (22%)

Query: 177 TPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY--------------------- 214
             +++  D   + +  GKG K R   L   +  AI +                       
Sbjct: 1   RVKDVDFDNGCITVHDGKGGKSRNSLLPTGLIAAIKQLIDRVLVIQQEDNAQGVGPSLPF 60

Query: 215 --------------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLS 259
                          +  F  +     P    +    L+  V ++ ++   +  G+    
Sbjct: 61  ALDRKYPSAYRQTAWMFIFPSSTLCNHPYSGKLCRHHLHDSVARKALKAAVQKAGILNKR 120

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|125625278|ref|YP_001033761.1| putative integrase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124494086|emb|CAL99087.1| putative integrase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300072088|gb|ADJ61488.1| putative integrase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 392

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 87/235 (37%), Gaps = 22/235 (9%)

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLK---KSNSLPRALNEKQALTLVDNVLLHTSH 147
            L+ IK  L Y  +     E+    +   K   +  S  +  + ++    +  +    + 
Sbjct: 151 MLNIIKRILDYGIQLGAIEENPATKVFPPKLKIREVSKIKYFDNEELKQFLTYLD---TL 207

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
           ET   + R   +   L   GLRI EAL+L+  +I     ++ +     + R V  +P  +
Sbjct: 208 ETTPTNKRRITLYRFLLATGLRIGEALALSWSDIDFFDKSVSVSKTMIQARGVQNMPKTK 267

Query: 208 -------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
                        K + E+      +    I  P+F              +  +   R  
Sbjct: 268 ESNRAIALDNDTIKMLKEWKKCQNNNTVRLIDSPIFSYNGKTYTYINEVTQLKKHFAR-A 326

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGD 308
            +P +   H  RH+ A+ L++N  + + IQ  LGH   + T   Y++++     +
Sbjct: 327 NVP-NIGFHGFRHTHASLLMNNDVNPKEIQRRLGHADYAITMNTYSHLSKSKEKE 380


>gi|186681294|ref|YP_001864490.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186463746|gb|ACC79547.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
          Length = 370

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 90/243 (37%), Gaps = 24/243 (9%)

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
                 +G  +  + L  +K   ++   + +   +    ++  +      +    ++   
Sbjct: 128 WLTKSNLGASTFNQRLGYLKRCYRWAISKNLGNSNPYDELKTRRVCTKSIKPFTSREIKV 187

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           ++        H   +        +  L   G+R SEA+ L   ++  DQ  + IQ    +
Sbjct: 188 IIQGFEESAMHYAPF--------IKFLLATGVRTSEAIGLRWCHVDFDQGFVTIQESLSR 239

Query: 197 IRIVPLLPSVRK----------AILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVF 243
                    VRK           + E      + L  +   P   +F  ++GKP++ G F
Sbjct: 240 DWAGNGYQRVRKETKTGSNRQLEMTEELRGLLWSLKPSKTDPDSLVFTTVKGKPIDDGNF 299

Query: 244 Q-RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST-TQIYTNV 301
           + RY  ++   +G+      +T RH+ A+H +  G  +  +  +LGH       Q Y ++
Sbjct: 300 RERYWVKVLTKVGVDYR-RPYTTRHTTASHAIDQGTSVTGVAYLLGHKDTRMVMQTYAHL 358

Query: 302 NSK 304
            ++
Sbjct: 359 VNR 361


>gi|253578301|ref|ZP_04855573.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850619|gb|EES78577.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 399

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 56/321 (17%), Positives = 119/321 (37%), Gaps = 43/321 (13%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-Q 81
           + + ++ G+   T+  Y+              +E      I ++  ++ +A++ K +   
Sbjct: 90  KYVSLKTGVRHNTVAGYKTVINML-------KKESFGNLRIDKVRLSDAKAWLIKLQQID 142

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKKSNSLPRALNEKQALTLVDN 140
             G  S+      ++   +      +  ++     + ++  ++S+      +        
Sbjct: 143 GRGYSSIHSIRGVLRPAFQMAVDDDLLRKNPFEFELASVIVNDSV----TREAITRKQQR 198

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---------- 190
            LL    E K       AI Y+L+  GLRISE   LT   I   +  +++          
Sbjct: 199 DLLKFIQEDKHFSRYYDAI-YILFHTGLRISEFCGLTVSEIEFGEMRIKVDHQLQRTAQM 257

Query: 191 ------QGKGDKIRIVPLLPSV----RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                       IR VP+  +V    R+ I          +       LF      P+  
Sbjct: 258 QYVIEEPKTDKGIRYVPMTEAVAACFRRIIANRKTPKVEPMVEGYAGFLFLDKNDMPMVA 317

Query: 241 GVFQRYIRQLRRYLG----LP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             +++Y+  + +       +     T H  RH+F +++  +G + +++Q I+GH  +S T
Sbjct: 318 LHWEKYLEHIIQKYNRIYRIQMPKVTPHVCRHTFCSNMAKSGMNPKTLQYIMGHADISVT 377

Query: 296 -QIYTNVNSKNGGDWMMEIYD 315
              YT+VN  +  +   E+Y 
Sbjct: 378 LNTYTHVNFDDAKE---EVYR 395


>gi|261343791|ref|ZP_05971436.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
 gi|282568175|gb|EFB73710.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
          Length = 329

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 60/274 (21%), Positives = 100/274 (36%), Gaps = 35/274 (12%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97
           +Y  DT    +F A      +    + QL+  ++  +   R    I   ++ R  S +  
Sbjct: 77  AYGRDT----LFRATRIATALDNPPMCQLNDKQLALYRELRLAAGIKPSTINRDFSALSG 132

Query: 98  FLKYLKKRKI-TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
               LK+  +   +  I  +  LK+  +    L                      +   N
Sbjct: 133 IFTALKRTDLFMGQHPIRGLGRLKQKATEMSYLT-----------SEEIELLLNLLKGDN 181

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
             +  L    G R  EA+ L   +++ ++       K  K RIVP+   V   I E    
Sbjct: 182 KKVAILCLSTGARWGEAVKLKRDHVIQNKIRFTF-TKTGKARIVPISQEVADMICE---- 236

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
                       LF        +  +F+R+I+ +     +PL    H LRH+FATH + N
Sbjct: 237 -------KKSGMLFP-----RTSYHMFRRHIKTI--KPDMPLGQATHALRHTFATHFMMN 282

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           GG + ++Q ILGH  L  T  Y +       D +
Sbjct: 283 GGSIITLQRILGHSTLQQTLTYAHFAPDFLQDAI 316


>gi|221196341|ref|ZP_03569388.1| phage integrase [Burkholderia multivorans CGD2M]
 gi|221203015|ref|ZP_03576034.1| phage integrase [Burkholderia multivorans CGD2]
 gi|221176949|gb|EEE09377.1| phage integrase [Burkholderia multivorans CGD2]
 gi|221182895|gb|EEE15295.1| phage integrase [Burkholderia multivorans CGD2M]
          Length = 421

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 61/361 (16%), Positives = 122/361 (33%), Gaps = 59/361 (16%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           +I +   L   + WL         +  T Q+Y  +  + L++      + ++  ++    
Sbjct: 64  QIAATNDLDAVRAWLARFVD----TPTTFQNYRKEAERLLLWAVIACGKPLS--SLTHED 117

Query: 68  YTEIRAFI-------------SKRRTQK----------IGDRSLKRSLSGIKSFLKYLKK 104
               R F+              ++  +           +   S ++++  + +   +L +
Sbjct: 118 LVAYRQFLLAPAPADVWCANGGRKHPRGDPRWRPFYGPLSPASQRQAMVILNAMFSWLVQ 177

Query: 105 RKITTESNIL--NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA--IL 160
                 + +     R  + +  + R L       + D +      + +     + A  + 
Sbjct: 178 AGYLAGNPLALSRQRQRRPAPRITRHLGPPLWQAVKDAIAALPRDDARASFHADRARWVF 237

Query: 161 YLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            LLY  GLRI+EA   T             D+  L + GKG + R+VP    +   +  Y
Sbjct: 238 TLLYLGGLRITEAAETTMGRFFCRRDASGRDRWWLDVTGKGGRRRLVPATDELMTELARY 297

Query: 214 YDLCPFD----LNLNIQLPLFRGIRGKPLNPGVFQRYIRQL---------------RRYL 254
                       + +  L L  G   +PL      R ++Q+                   
Sbjct: 298 RRAHGLAPLPVADEDTPLVLPFGQARRPLTRAALHRIVKQVFRHAADRLRTQGDAGAEQA 357

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            +    +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +         E +
Sbjct: 358 RVLEQASAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHADDDWRHRETEEKH 417

Query: 315 D 315
            
Sbjct: 418 R 418


>gi|94442300|dbj|BAE93649.1| integron integrase [uncultured bacterium]
          Length = 162

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 52/112 (46%)

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + G G+      L      A   +     F  N     P    ++   ++    Q+ I++
Sbjct: 50  VDGYGETTLPYALARKYPSAAKSWMWQYAFPSNQPCFAPDLGTMKRHHVHQTSVQKAIKR 109

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                 +     +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 110 AVTRCNINKRVGSHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|219669966|ref|YP_002460401.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
 gi|219540226|gb|ACL21965.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
          Length = 310

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 88/222 (39%), Gaps = 23/222 (10%)

Query: 95  IKSFLKYLKKRKITTESNILN--MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           +KS +       + T        ++    S+   + L++ +  +L+ ++ L       W 
Sbjct: 82  LKSAILDAMDEGLLTIDPTRKVIIKGKPVSDKKNKFLSQFELQSLLKSLNLTDKPNWDW- 140

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
                  + L+   GLR SEAL+LTP++   +   ++I    +           +    +
Sbjct: 141 ------FILLVAKTGLRFSEALALTPKDFDFECQKVKISKTWNYKNAEGGFGETKNLSSK 194

Query: 213 YYDLCPFDLNLNIQ---------LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
                   LN  I+          P+F       +        ++ L +  G+P+  +AH
Sbjct: 195 RTIQIDIQLNTQIERLSKDLADDEPIFV---QGRVFNSTVNNRLKVLCKKAGVPI-ISAH 250

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
            LRH+ A+ L+  G  + SI   LGH  +STTQ  Y ++  +
Sbjct: 251 CLRHTHASLLIFAGVSIASIAKRLGHSSISTTQETYLHIIKE 292


>gi|237721768|ref|ZP_04552249.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229448637|gb|EEO54428.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 386

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 50/319 (15%), Positives = 119/319 (37%), Gaps = 32/319 (10%)

Query: 13  ELLKER-QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           EL +E+ +++ + +  E+  S  T      D +  L+FL    ++ +    + +L    I
Sbjct: 87  ELFREQLESYKEKVGKEKAKS--TYLGLVADYKSALLFLK--DKKNVEDIALDELDKDFI 142

Query: 72  RAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
             + +    T      +    ++ +K  +   +++ +            K        L+
Sbjct: 143 EDYYNWMLGTCGSASSTAFGRVNTMKWLMHIAQEKGLIKVHPFTGF-GCKPGYKRRSFLS 201

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ--NIMDDQSTL 188
           E++   L+   L +   +          +L  +   GL  ++  ++T +  +   D  T 
Sbjct: 202 EEELQRLIHVELRYKRQQAM------RDMLLFMCFTGLAFADLKAITYKNIHTDSDGGTW 255

Query: 189 RI--QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            +  + K     +V LLP   + + +Y        + +   P+         +    +  
Sbjct: 256 LMGNRIKTGVAYVVKLLPIAIELVEKYKGDNKKKDSPDCVFPVG--------DYETMKSS 307

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV----- 301
            + L +     ++ T H  RH+FA   +  G  L ++Q +LGH  + +TQ+Y  +     
Sbjct: 308 FKVLGKKCDCNVNITPHIGRHTFAVLAILKGMPLETLQKVLGHKSILSTQVYAELINPKV 367

Query: 302 --NSKNGGDWMMEIYDQTH 318
             ++    D +  +Y   +
Sbjct: 368 GEDTDRMCDKIGSVYRLAN 386


>gi|149916559|ref|ZP_01905074.1| Integrase [Roseobacter sp. AzwK-3b]
 gi|149809533|gb|EDM69392.1| Integrase [Roseobacter sp. AzwK-3b]
          Length = 189

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 49/188 (26%), Positives = 82/188 (43%), Gaps = 12/188 (6%)

Query: 133 QALTLVDNVLLHTSH--ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           QA T  D  L    H   T+    R+  I+   +  GLR  E  +L   ++ DDQ  +R 
Sbjct: 3   QAQTFSDTQLKRILHWCSTRRHPTRDRTIVLTSFYAGLRAKEIAALKVGDVYDDQGAVRD 62

Query: 191 Q-------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           Q        KG K R V +   +R+ ++EY D      + +   PLF   +G   +    
Sbjct: 63  QFTLTAAQAKGGKSRTVWINRRLRRQLVEYRDAV--LGSRSTAEPLFVSQKGGAFSANTM 120

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            +    + +  G   + ++H+ R SF T+L +    +R +  + GH  + TTQ Y +VN 
Sbjct: 121 TQLFLVIYKSAGFA-NASSHSGRRSFITNLAAKSVSVRVLAELAGHSSIQTTQRYIDVNP 179

Query: 304 KNGGDWMM 311
           K   + + 
Sbjct: 180 KQMSEAVE 187


>gi|325279715|ref|YP_004252257.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
 gi|324311524|gb|ADY32077.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
          Length = 451

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/293 (17%), Positives = 114/293 (38%), Gaps = 31/293 (10%)

Query: 46  FLIFLAFYTEEKITIQTI--RQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYL 102
           F  FL    +      +I    ++   + ++IS RR  ++  D ++  SL+ I     Y 
Sbjct: 156 FQTFLRATRQGTYRSDSIYVGDMTPELLDSYISWRREIKQNSDATINHSLTPILKACAYA 215

Query: 103 KKRKITTESNILNMRNLKKSNSLP----------RALNEKQALTLVDNVLLHTSHETKWI 152
            +  +   +    +++++    +           ++L+++Q   L++     T    K  
Sbjct: 216 CEMGMMEPAVNARIQDMRIVTKVSLSEEEAEFDGKSLSKEQMAALLEYYKTCTEPRRK-- 273

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSVRKAIL 211
                   +  + CGLR+ + ++L  ++I   +  LR I  K +K  ++PL       + 
Sbjct: 274 -EFLEMFFFAFHACGLRVVDVMTLQWKHIDFARKELRKIMIKTNKRHVIPLTEPALHILQ 332

Query: 212 EYYDLC----------PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           ++ +               L+L+    L++             + +  +   +GLP S +
Sbjct: 333 QWREKREGCRYVFNLVKETLDLDDAEALYKARNNA---TKCINQSLAVVGEQIGLPFSLS 389

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
            H  RHSFA   L+ G  +  +  +LGH     T+ +Y     +     + ++
Sbjct: 390 MHAARHSFAVFALNKGLSMSVVSRLLGHSSTDITEKVYARFLPETLSAEVAKL 442


>gi|188585737|ref|YP_001917282.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350424|gb|ACB84694.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 189

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 81/192 (42%), Gaps = 10/192 (5%)

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
             ++P ALN ++      N LL        +  R+  I+ L+   GLR+ E  SL   N+
Sbjct: 2   PQTVPVALNREE-----QNSLLRVPERNTVMGLRDLIIMNLILNYGLRLYELRSLRWDNL 56

Query: 182 MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
               + + I + KG   R + L  +  K +  + D      + +    +   + G  ++ 
Sbjct: 57  DLHANMIYIPKSKGSFGRKLQLRLADYKLLNTWKDTQNQYFSTS---YVITTLSGNVISG 113

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              +  +++  +  G+    T H LRH FA       GDL  +Q +LGH   STT+ Y  
Sbjct: 114 SYIESILQRYSQKAGISKRLTPHILRHVFAVDSYKKTGDLDKVQELLGHRFRSTTEEYLK 173

Query: 301 -VNSKNGGDWMM 311
            V+++     + 
Sbjct: 174 IVDTRVSPSKLK 185


>gi|94442282|dbj|BAE93640.1| integron integrase [uncultured bacterium]
          Length = 162

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 52/112 (46%)

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + G G+      L      A   +     F  N     P    ++   ++    Q+ I++
Sbjct: 50  VDGYGETTLPYALARKYPSAAKSWMWQYAFPSNQRCFAPDLGTMKRHHVHQTSVQKAIKR 109

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                 +     +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 110 AVTRCNINKRVGSHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|49486813|ref|YP_044034.1| integrase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|49245256|emb|CAG43729.1| integrase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|319894719|gb|ADV76530.1| integrase [Staphylococcus phage TEM126]
          Length = 345

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 111/278 (39%), Gaps = 18/278 (6%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           + T + Y    +          + KI    + +++    + FI+    +   + +++++ 
Sbjct: 74  ENTYRHYRNALQH-------IQKHKIGKMELSKINRQVYQKFINDYSKEHAKE-TIRKTN 125

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             I+S L          ++    + N K         +E++    V    +   H  K  
Sbjct: 126 GAIRSALDDALYDGFIFKNPAYKV-NYKAGKP---TKSEQEKFISVTEYEILKDHVRKKR 181

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
              + A+  ++   G R+S A ++  ++I   ++T+ I  +        +  S+ K+ ++
Sbjct: 182 TRSSLALF-IMICTGCRVSGARNIKTEHINQVKNTIFIDERKTDTSPRYI--SIAKSDMK 238

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +         ++    +F+      +N       ++   R   +P+  T+H LRH+  ++
Sbjct: 239 HIMDVISTFAISYDGYIFKEAGSI-INLQAINNALKSACRVNNIPI-ITSHALRHTHCSY 296

Query: 273 LLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDW 309
           LL+ G  +  I   LGH  ++ TT +Y+++  +   + 
Sbjct: 297 LLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEE 334


>gi|223369766|gb|ACM88753.1| integrase [uncultured bacterium]
          Length = 163

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 66/162 (40%), Gaps = 37/162 (22%)

Query: 177 TPQNIMDDQSTLRIQ-GKGDKIRIVPLLP---SVRKAILEYYDLCPFDLNLNIQLP---- 228
             +++  D   + +  GKG K R   L        K ++E   L   D NL    P    
Sbjct: 1   RVKDLDFDNGCITVHDGKGGKSRNSLLPTRLIPAIKQLIEQARLIQQDDNLQGVGPSLPF 60

Query: 229 -----------------LFRG-----------IRGKPLNPGVFQRYIRQLRRYLGL-PLS 259
                            +F             +    L+  V ++ ++   +  G+    
Sbjct: 61  ALDRKYPSAYRQAAWMFVFPSSTLCNHPYNGKLCRHHLHDSVARKALKAAVQKAGIVSKR 120

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|229192133|ref|ZP_04319101.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus ATCC 10876]
 gi|228591340|gb|EEK49191.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus ATCC 10876]
          Length = 376

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 100/292 (34%), Gaps = 37/292 (12%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             TL  Y+   R            +   + +  +    +  F  K   + +  + +    
Sbjct: 80  PSTLYQYKRILRS-------RVMPEFGEKRLSDIKPLTVHNFHQKLLKEGLTTKYISSVD 132

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +K  L    + ++   +     +  K       +   ++A+  ++            I
Sbjct: 133 VMLKQILDKGVELEMINSNPAKKAKRPKVKKKAQASWTIEEAMKFMEY---------AKI 183

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---------------GKGDKI 197
                    L    G+RI E L+L  ++I  +   + +Q                     
Sbjct: 184 QGSYYIAFVLALHTGMRIGEVLALQWKDINFESKIIHVQRTLTLVDGKYELGETKTEASN 243

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R++P+   +   +LEY          N    L      K ++P   +  ++ L   + +P
Sbjct: 244 RMIPMTEELMGELLEYQSHK----KDNSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVP 299

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
                H +R +F T L+ +G + + +  +LGH  +STT  IYT+V  +   +
Sbjct: 300 Y-IRFHDIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDVYEERQIE 350


>gi|121583050|ref|YP_973491.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
 gi|120596312|gb|ABM39749.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
          Length = 609

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 66/345 (19%), Positives = 129/345 (37%), Gaps = 56/345 (16%)

Query: 15  LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
           L+  Q+W+Q     R  S  T   Y+ +  + L++L +         T+ Q++  +  AF
Sbjct: 275 LQAVQSWIQA----RAGSLATATLYQREAHRLLLWLQYECRG----ATLTQMTVADCGAF 326

Query: 75  ISKRR----------------------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
           +   +                        ++   S ++++  I S   +L+     + + 
Sbjct: 327 MVFLQHIPLRWISRARAAPGQSGWAPFRGQLSHASCRQTIVIIASMFAWLQSALYLSSNP 386

Query: 113 ILNM-----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
            + +      +  K     +AL+E   L ++  +       ++   AR   IL  +   G
Sbjct: 387 WVLVNQSTGDDPGKKMLDTKALSEAAMLEVLRFIDAQAPSPSR---ARIRFILLFVEAVG 443

Query: 168 LRISEALSLTPQN--IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF-DLNLN 224
           LR +E LS T  +  +  +   +++ GKG K RI  +      A+ +Y  +     +   
Sbjct: 444 LRSAELLSATLGDLRMEPEGWVMQVHGKGSKNRIAAVPGQALHALQDYLLVRGLGSIQAA 503

Query: 225 IQLPLFRGIRGKPLNPGVFQR-------YIRQLRRYLGLPLS-------TTAHTLRHSFA 270
                       P+ P  +Q        ++ +  R   LP +        T H LRH+F 
Sbjct: 504 PPTARLLASAVDPMAPVGYQALYEHVRGWLAKAVRASSLPANERERLAGATTHWLRHTFG 563

Query: 271 THLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDWMMEIY 314
           T  ++    L  IQ+ +GH  +  TT IY     K   D + + +
Sbjct: 564 TRAIAREVPLDVIQAQMGHASIQTTTAIYGRAPIKRRVDELGKAF 608


>gi|329920468|ref|ZP_08277200.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners SPIN 1401G]
 gi|328936144|gb|EGG32597.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners SPIN 1401G]
          Length = 413

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 96/281 (34%), Gaps = 27/281 (9%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGI 95
            +Y+  +R F   + F+ +E+     ++ +S  E   + +   T             +  
Sbjct: 91  STYDTHSRMFFKAVNFFADER-----LKDISVAECEKYRTWLLTNSGYSQSYASLIYTSF 145

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
           +  L Y  +  + T +  +  + + K   + +   +++   +     L   +   + +  
Sbjct: 146 RQSLDYAVEINLITTNPSMKTKAVPKGKGIEKYWTKEEFEKV-----LACINTDSFYENL 200

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI------QGKGDKIRIVPLLPSVRK- 208
                   Y  G R+SE  SL   +I      +RI      + K +         +  K 
Sbjct: 201 IYVTFLFYYRIGCRVSEGFSLKWSDIDLTNGRVRIFHNLHYKNKLEYEIKPYTKTNAGKR 260

Query: 209 ------AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
                  +L+           +            P N      ++++  +  G+      
Sbjct: 261 TVTIDNELLQVLKDWKKRQKKHGVTDFVLSYDNCPNNKSTLSTWLKRYAKLAGVAR-IDG 319

Query: 263 HTLRHSFATHLL-SNGGDLRSIQSILGHFRLSTT-QIYTNV 301
             LRHS A++L+   G D+ ++   LGH   + T Q Y ++
Sbjct: 320 RGLRHSNASYLIAEMGADVLTVAHRLGHKSPTVTLQYYAHM 360


>gi|330995740|ref|ZP_08319638.1| hypothetical protein HMPREF9442_00705 [Paraprevotella xylaniphila
           YIT 11841]
 gi|329574799|gb|EGG56360.1| hypothetical protein HMPREF9442_00705 [Paraprevotella xylaniphila
           YIT 11841]
          Length = 303

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 24/212 (11%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + +L+ L+  R  S  T++ Y    R F                I  ++  EI  ++   
Sbjct: 114 EGYLEKLQQVR-YSDHTVRVYTSYFRDFQQHFEGRK--------IETVTPGEINDYLLYL 164

Query: 79  -RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              + I      + ++ IK + + +  ++         +   K+  +LP  L++++   +
Sbjct: 165 IHEKNISSCQQNQRINAIKFYYEKVLGQERR----CYKVNRAKREKTLPDVLSKEEIKKI 220

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDK 196
           +D             D R   +  +LY  GLRISE L L P +I +  S +R++ GKG K
Sbjct: 221 LD---------VTVTDLRFFCMFSILYSAGLRISELLELKPGDINESLSLIRVRQGKGKK 271

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
            R   L   + K + +Y  L    +    Q P
Sbjct: 272 DRYTLLSRPLMKKLTKYNRLYKPKVWFFEQRP 303


>gi|314933994|ref|ZP_07841359.1| integrase [Staphylococcus caprae C87]
 gi|313654144|gb|EFS17901.1| integrase [Staphylococcus caprae C87]
          Length = 354

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 103/280 (36%), Gaps = 11/280 (3%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           +SY         F  F   E I+  T+  L+ T  R FI     +     ++++  + +K
Sbjct: 75  KSYATFNNAINQFKLFLETENISDVTLSDLNTTFYRKFIKW-YGENHATETVRKIHNCLK 133

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
             +    +  +  ++    +        +P A  E +    ++N +    + +     ++
Sbjct: 134 QSIDDAIQEGLMHKNPTYKVV---VKGRIP-AQKEDEKFMSIENFVNLKKYVSDTP-IQS 188

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
              +Y+L   G R  E   L+  ++    +T+ + G   +     +        +    L
Sbjct: 189 YIFVYILIITGGRFGEVQKLSRSDLDYKNNTIHLPGTKTETSDRIVDIPATDMNMLRKTL 248

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
               ++L+ QL          +      + +++      +    T H++RH+  ++LL N
Sbjct: 249 SKMPVSLSNQLF---NTGVGLITHNAVSKVLQKFCLENKIGKY-TLHSIRHTHCSYLLHN 304

Query: 277 GGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYD 315
              +  I   LGH  + TT  +Y+++  +       +  +
Sbjct: 305 DVSIYYISKRLGHKNIKTTMDVYSHLLDEVEQKEREKAVN 344


>gi|261367877|ref|ZP_05980760.1| putative transposase [Subdoligranulum variabile DSM 15176]
 gi|282570685|gb|EFB76220.1| putative transposase [Subdoligranulum variabile DSM 15176]
          Length = 411

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 61/341 (17%), Positives = 123/341 (36%), Gaps = 61/341 (17%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-R 79
           + + ++++  L + T  +Y       L     +       + I  + ++++  F +   +
Sbjct: 77  FDRYMKLKANLRQTTRSNY-------LYMYDRFVRNTFGNKKIADIRFSDVLQFYNCLLQ 129

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-----LPRALNEKQA 134
            Q++   +L+   + ++   +   +  I   +    +    K NS     +  AL   Q 
Sbjct: 130 QQEMQINTLESIHTLLRPTFQLAVRDGIIRNNPTDGVLAEVKKNSDQHSGIRHALTVAQQ 189

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-- 192
              +++V  H       +      +  +L G G RI EAL L  ++I  +   + I    
Sbjct: 190 RAFMEHVANH------PVYFHWWPLFTILLGTGCRIGEALGLRWEDIDCENRMIHINHSL 243

Query: 193 -------------------KGDKIRIVPLLPSVRKAIL----EYYDLCPFDLNLN-IQLP 228
                                   R +P+L SV+ A      E  +    D+ ++ +   
Sbjct: 244 VYYPVGESRTSVQHISKPKTKAGERTIPMLDSVQDAFEMLREEQLENGWNDVEIDGMHGF 303

Query: 229 LFRGIRGKPLNPGVFQRYIRQLR---------------RYLGLPLSTTAHTLRHSFATHL 273
           +F    G   NP    R I+++                R   L    +AH LRH+F T L
Sbjct: 304 IFCNRFGNVPNPQSVNRAIKRIVSDYNATEEISAKREHREAILLPDFSAHHLRHTFCTRL 363

Query: 274 LSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
                +L+ IQS++GH  + TT  +Y     +   +    +
Sbjct: 364 CEQETNLKVIQSVMGHKDIKTTMDVYAEATEEKKQESFERL 404


>gi|223369762|gb|ACM88751.1| integrase [uncultured bacterium]
          Length = 163

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 66/162 (40%), Gaps = 37/162 (22%)

Query: 177 TPQNIMDDQSTLRIQ-GKGDKIRIVPLLP---SVRKAILEYYDLCPFDLNLNIQLP---- 228
             +++  D   + +  GKG K R   L        K ++E   L   D NL    P    
Sbjct: 1   RVKDLDFDNGCITVHDGKGGKSRNSLLPTRLIPAIKQLIEQARLIQQDDNLQGVGPSLPF 60

Query: 229 -----------------LFRG-----------IRGKPLNPGVFQRYIRQLRRYLGL-PLS 259
                            +F             +    L+  V ++ ++   +  G+    
Sbjct: 61  ALDRKYPFAYRQAAWMFVFPSSTLCNHPYNGKLCRHHLHDSVARKALKAAVQKAGIVSKR 120

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|332983440|ref|YP_004464881.1| integrase family protein [Mahella australiensis 50-1 BON]
 gi|332701118|gb|AEE98059.1| integrase family protein [Mahella australiensis 50-1 BON]
          Length = 374

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/307 (15%), Positives = 111/307 (36%), Gaps = 41/307 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLK 89
           L+  T +SY    R +   +  + E       + +L    I+ + +  + + K+ D ++ 
Sbjct: 80  LAPKTYKSYSDTVRLYFKPILGHIE-------LAKLKPITIQRYYNMLKEESKLSDTTIN 132

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
                ++  LK   K +  +++    +   KK N+  +  + +               E 
Sbjct: 133 YHHRLLRQALKQAVKWQYISKNPCDAVDAPKKRNTEMKVWDIEDVKK----------AEE 182

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK------------- 196
              ++     + L    G+R  E   L  ++I     T  ++    +             
Sbjct: 183 VLSNSPIFLHVMLAIYTGMREGEICGLKWEDISFKDGTCMVRRTAQRVNKKLIFKEPKTD 242

Query: 197 --IRIVPLLPSVRKAIL-------EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
             IRIV L  ++ + +        E   L     + + +  +     G    P    +  
Sbjct: 243 TSIRIVALPQNIIELLKQEKKKQAENKILLGSAYDSSYEGYISVWEDGHFKEPDYVSKKF 302

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNG 306
            ++            H LRH+ A+ +L++G +++ I   LGH ++  T  +Y++V+    
Sbjct: 303 HKILAITPELPMIRFHDLRHTHASLMLASGVNMKVISERLGHSQIGITMDLYSHVSVDLQ 362

Query: 307 GDWMMEI 313
            D + ++
Sbjct: 363 KDAIKKL 369


>gi|297172228|gb|ADI23207.1| integrase [uncultured Gemmatimonadales bacterium HF0770_11C06]
          Length = 296

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 108/259 (41%), Gaps = 27/259 (10%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           +  + + Q++  ++  +    R +++   ++ R L+ ++       + K   +S +  ++
Sbjct: 9   VGDKRLDQVTTFDVERW-KTVRAKQVRKSTVNRELNIVRGCFSRAVEWKRLVKSPMATVK 67

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL-RISEALSL 176
             +  N+  R L+  +   ++                ++ A++  +   GL R+SE LSL
Sbjct: 68  PFRVENTRLRVLSPDEIRVVLTE------------APQDLALIARVTLEGLLRVSEVLSL 115

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG- 235
              +I  D   +    K +K+R VP+   +R+A+L            +    +F   R  
Sbjct: 116 MRSDIQRDYLVVT-HTKNNKVRKVPISSDLRRALL---------ARTHQSGYVFGETRYQ 165

Query: 236 -KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
             P       +  R++   LG+  + + HTLRH+ A+ +L++G  +R +Q I G   L  
Sbjct: 166 GHPATQSTVTQAFRRVMARLGIA-NASHHTLRHTGASSMLADGISVRVVQEIGGWRSLRM 224

Query: 295 TQIYTNVNSKNGGDWMMEI 313
            + YT+         +   
Sbjct: 225 LERYTHPTDAETRRAVASA 243


>gi|317055894|ref|YP_004104361.1| integrase family protein [Ruminococcus albus 7]
 gi|315448163|gb|ADU21727.1| integrase family protein [Ruminococcus albus 7]
          Length = 362

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 53/309 (17%), Positives = 113/309 (36%), Gaps = 33/309 (10%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K  + WL    +   + + TL +Y     + ++        +        L+   I AFI
Sbjct: 67  KVYREWLN--AVVNRVKESTLANYRNKFEKHILL-------EFGDIPCADLTAGRINAFI 117

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
           +K+    +    ++   +  K+ LKY  + +     ++ N+   K   +    +++ +  
Sbjct: 118 NKKLADGLSASYVRDIFTVFKTMLKY-AQEEYGFRLSLKNVVLPKAERNQVEKISDAEQK 176

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            LV  +  + S             + L    GLRI E   L  +++      L I+    
Sbjct: 177 KLVSYLKANMSLTAFG--------ILLSLFMGLRIGELCGLKWEDVDFRNKILHIRRTVQ 228

Query: 196 KI------RIVPLLPSV-------RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           +I      R   ++ S        R+  +    +  F++  +           KP+ P  
Sbjct: 229 RISSANGNRKTKIVISAPKSATSFREIAIPDMLMEYFEMFRDEADHFILSGTDKPVEPRT 288

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL-STTQIYTNV 301
            Q   +++     +      H LRH+FAT+    G +++++ ++LGH  +  T   Y + 
Sbjct: 289 MQYRYKKILHTADVEDH-NYHKLRHTFATNSAEKGFNVKALSAVLGHSSVPLTLNRYIHP 347

Query: 302 NSKNGGDWM 310
           +       M
Sbjct: 348 DRTYERRLM 356


>gi|153954363|ref|YP_001395128.1| transposase [Clostridium kluyveri DSM 555]
 gi|219854954|ref|YP_002472076.1| hypothetical protein CKR_1611 [Clostridium kluyveri NBRC 12016]
 gi|146347244|gb|EDK33780.1| Transposase A from transposon Tn554 [Clostridium kluyveri DSM 555]
 gi|219568678|dbj|BAH06662.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 379

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 57/353 (16%), Positives = 123/353 (34%), Gaps = 76/353 (21%)

Query: 22  LQNLEIER--GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           L+ +  +   G ++ TL++Y    + F  FL   +         R +   E+ +F+   +
Sbjct: 35  LKYIRYKDNAGAARNTLRAYCYHLKLFFQFLDQES------LDYRDIGLDEMASFMRWLQ 88

Query: 80  --------------TQKIGDRSLKRSLSGIKSFLKYLKKRK------------------- 106
                         T     +++   LS +  F  Y+ + +                   
Sbjct: 89  NPYGSLKVSPIALATSTRTAQTINIVLSTVIGFYDYIMRHEDYSVQLSVRLKRQISGSHR 148

Query: 107 -------ITTESNI--LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
                     +       +  LK   S P+ +++++   L+D             + R+ 
Sbjct: 149 GFKNFLYHINKDRSYDRKILKLKAPKSKPKTISKEKVGILMDAC----------SNIRDK 198

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG-----------DKIRIVPLLPSV 206
            ++ LL+   +RI EAL+L  ++   D   + I+ +G              R + +   +
Sbjct: 199 FLIQLLWESSIRIGEALALWLEDFQIDAGKIHIRDRGELSNHAEIKTVCSPRTIDVSSDL 258

Query: 207 RKAILEYYDLCPFD-LNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
               ++Y      D ++ N     F G  + +PL          +L+   G+    + H 
Sbjct: 259 MNFYMDYIAEYHTDEVDTNHVFIKFSGENKYQPLEYQDVVSLFNRLKSKTGID--VSPHI 316

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQ 316
           LRH+  T L   G     +    GH  + TT Q+Y + + ++      +  ++
Sbjct: 317 LRHTSLTELRRAGWRDEHLMKRAGHAHVQTTMQMYIHPSDEDIRKDWEKAEEK 369


>gi|41179218|ref|NP_958556.1| putative integrase [Lactobacillus prophage Lj965]
 gi|42518375|ref|NP_964305.1| Lj965 prophage integrase [Lactobacillus johnsonii NCC 533]
 gi|38731488|gb|AAR27434.1| putative integrase [Lactobacillus prophage Lj965]
 gi|41582660|gb|AAS08271.1| Lj965 prophage integrase [Lactobacillus johnsonii NCC 533]
          Length = 391

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 63/292 (21%), Positives = 112/292 (38%), Gaps = 46/292 (15%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
               Q + +++  E++ +  ++  Q +  R      + +    +Y  +    +E+ +  +
Sbjct: 106 DFGNQYVDKITVAELQKWADRKAKQIVKYRDAINEFNAL---FEYGIRLNYVSENPLKRI 162

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              KK++  PR   E    T     L       K           LL   GLR SEAL+L
Sbjct: 163 IIPKKTSR-PRRDTEHNVYT--REELNQFLEVAKEYGLVQYTYFKLLSATGLRKSEALAL 219

Query: 177 TPQNIMDDQSTLRIQGK----------------GDKIRIVPLLPSVRKAILEYYDLCPFD 220
           T Q+I     TL I                       RI+P+  S+++ +++Y       
Sbjct: 220 TWQDIDLKAGTLSINKTLAYGLDNKTIIQPPKSPKSKRILPISDSLKEVLIDYKQKQKII 279

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIR-----------QLRRYLGLP------LSTTAH 263
            N      LF  I+G  L      ++++           +  +   L          T H
Sbjct: 280 SNK-----LFHTIKGTYLKMSKPDQWLKSIYAKDHEEKVKYAKTHNLKEPQPDLRHITVH 334

Query: 264 TLRHSFATHLLSN-GGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
             RH+FAT L++      +++Q +LGH  +  T  IYT+VN+KN  D +  +
Sbjct: 335 GFRHTFATLLIAETNVKPKTVQMLLGHENIQMTLDIYTHVNNKNKEDAVNAL 386


>gi|332876837|ref|ZP_08444592.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332685202|gb|EGJ58044.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 372

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/261 (19%), Positives = 97/261 (37%), Gaps = 31/261 (11%)

Query: 62  TIRQLSYTEIRAFISKRRT--------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI 113
           T  ++     R F+             QK+   S     S  ++ L    + +   E+  
Sbjct: 127 TFEEVDVDLCRKFMEYLLNAPQTIHINQKLHINSAAGYWSAFRAVLHAAYRDRKIKENPN 186

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
             +  ++   ++   L++++ + L          ET   +             GLR S+ 
Sbjct: 187 GFLDRIESIPTMREHLSQEELIRL---------AETPCEEEVLKRAFLFACLTGLRKSDI 237

Query: 174 LSLTPQNIMDD-QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
             LT Q I       + +  +  K + +   P   +A           L    +  +F G
Sbjct: 238 RQLTWQQIQPYTNGKMFVTTRMQKTKQIVHNPISDEA--------YGLLGERHEGLIFEG 289

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
            + K L     Q  +++     G+    T H  RHSF +  +  G D+  IQ+ LGH  +
Sbjct: 290 FKDKML-----QGPLKRWLSAAGITKKITFHCTRHSFGSLHVEMGTDMAVIQACLGHKNI 344

Query: 293 STTQIYTNVNSKNGGDWMMEI 313
           +TTQIY+ + ++   D + +I
Sbjct: 345 TTTQIYSKMAAQQMCDVVDKI 365


>gi|329957482|ref|ZP_08297957.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
 gi|328522359|gb|EGF49468.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
          Length = 393

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 52/264 (19%), Positives = 101/264 (38%), Gaps = 15/264 (5%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLK 120
           T   L++  + +F    + +     ++ + +  +K  +     ++    +        +K
Sbjct: 143 TFSDLTFEFVSSFEYFLQLKGYHTNTIAKHMKHLKRHVNIAINKEYIEIQKYAFRKYKIK 202

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
              +    L  ++   L     L+ S     +     A L+  Y  G+R S+  +L+ +N
Sbjct: 203 TVENKHTHLVPEELEKL---EKLNLSGRYMKLQKSLDAFLFCCYA-GMRYSDFTNLSSEN 258

Query: 181 I-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           I   +Q T  I         V L   +  A      L  +  NL     L          
Sbjct: 259 IVDINQETWLIYKSVKTGTEVRLPLYLLFAGKGIIILNKYRDNLEGFFRLRDN------- 311

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                + +  L +  GL  + + HT RH+ AT L+ NG ++ ++Q +LGH  + TTQ+YT
Sbjct: 312 -SNVNKDLLTLAKLAGLSKNISFHTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYT 370

Query: 300 NVNSKNGGDWMMEIYDQTHPSITQ 323
           N+        + ++  Q  P   +
Sbjct: 371 NIMDMTIIHDLEKM-KQATPFAGK 393


>gi|295089981|emb|CBK76088.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 323

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 52/311 (16%), Positives = 114/311 (36%), Gaps = 24/311 (7%)

Query: 13  ELLKERQNWLQ-NLEIER--GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           EL  E   +LQ  LE  R  GL + T+          +     +   +      ++++  
Sbjct: 17  ELNPEMDAFLQGYLEEGRRKGLQESTI-----HLHDKIGHYFLFAMTETGCLKPQEMNAQ 71

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
            +   I+  +       S +  LS I++FL+Y  +   T       +   K     P   
Sbjct: 72  NVG--IACLKI------SSRWYLSHIRTFLRYAYQSGNTDRDYSGIVPLFKIPQPYPSVY 123

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
             ++   + ++V   + H  +     + A L L    G+R  +  S+T + +  +++ +R
Sbjct: 124 TAEEIQKIENSVDQSSPHGKR-----DYAALLLATRLGIRSGDISSMTLECLDFERNLIR 178

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           +      + I   + S  K  LE Y         +  + L        ++     +  R 
Sbjct: 179 LTQHKTGVFIEFPMVSDVKVALERYLQEERTAYDSPYVFLRIVPPYGHISVQAIAKIART 238

Query: 250 LRRYLGLP---LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
                G+        AH  R S A+ ++++     +++ ILGH   +  + Y  ++ +  
Sbjct: 239 AIAVAGIEPGGRKQGAHAFRSSLASSMINDNIPYEAVRKILGHTDQNAIRSYARLDMEQL 298

Query: 307 GDWMMEIYDQT 317
             + + + + T
Sbjct: 299 RGYALPVMEAT 309


>gi|125623455|ref|YP_001031938.1| phage integrase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124492263|emb|CAL97194.1| phage integrase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070203|gb|ADJ59603.1| phage integrase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 338

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 49/272 (18%), Positives = 106/272 (38%), Gaps = 19/272 (6%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           +T++ L+ T  + +++   T+   D S+++  + I++ ++     +I         + + 
Sbjct: 68  ETLKSLTKTRYQKYLNG-YTKTHADHSVRQFNTHIRAAVQNALDEQIIATDFTK--KAVV 124

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K     ++  EK         LL  S E          ++YL    G+R  E + L    
Sbjct: 125 KGQGAKKSEEEKYINYADFVRLLRLSSEKIDSFYSTRLMIYLAGTTGMRFGELIGLKWSE 184

Query: 181 IMDDQSTLRIQ------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
           +  +   + I+             KG KIR + +     K +L+  D        N    
Sbjct: 185 VDFENEIINIKLEYNYVTKIFTEPKGYKIRKITINSKTAKILLDLKDNQINHELDNPDNL 244

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +F       ++       +R++++ L +  + T H LRH+  + LL  G ++ ++   LG
Sbjct: 245 VFFNPTYGIVSNNAANSVLRRMQKNLEIYPTITMHGLRHTHGSVLLMKGINILAVSKRLG 304

Query: 289 HFRLSTTQ-IYTNVNSK---NGGDWMMEIYDQ 316
           H  +  T  +Y ++  +      D +    D+
Sbjct: 305 HASVDITLGVYAHLLKELEDRENDKIKSELDK 336


>gi|303236616|ref|ZP_07323197.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483120|gb|EFL46134.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 337

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 59/317 (18%), Positives = 115/317 (36%), Gaps = 49/317 (15%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++L      +GL+      ++   + F  F+           T  ++     R F+    
Sbjct: 60  DFLAYF---KGLADRKNIKWQHVYKHFQRFVNGKC-------TFEEVDVDLCRKFMEYLL 109

Query: 80  T--------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
                    QK+   S     S  ++ L    + +   E+    +  ++   ++   L++
Sbjct: 110 DAPQSIHTNQKLHINSAAGYWSTFRAVLHTAYRDRKIKENPNGFLDRIECIPTIREHLSQ 169

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTLRI 190
           ++ + L          ET   +             GLR S+   LT Q I       + +
Sbjct: 170 EELIRL---------AETPCEEEVLKKAFLFACLTGLRKSDIRQLTWQQIQPYTNGRMFV 220

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
             +  K + +   P   +A           L    +  +F   + K L     Q  +++ 
Sbjct: 221 TTRMQKTKEIVHNPISDEA--------YGLLGERGEGLIFEDFKDKML-----QGPLQRW 267

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
               G+    T H  RHSF +  +  G D+  IQ+ LGH  ++TTQIY+ + ++     M
Sbjct: 268 LTAAGITKKITFHCTRHSFGSLHVEMGTDMAVIQAYLGHKNITTTQIYSKIAAQQ----M 323

Query: 311 MEIYDQTHPSITQKDKK 327
            ++ D+    IT K K+
Sbjct: 324 CQVVDK----ITLKRKE 336


>gi|295089982|emb|CBK76089.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 329

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 60/315 (19%), Positives = 115/315 (36%), Gaps = 37/315 (11%)

Query: 19  QNWLQNLEI-ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           Q++   +E  +  +S  TL++       F   LA         +   ++S   +  +I +
Sbjct: 10  QDFADYIETNQETISNDTLRNTRSVLLTFDSLLAK--------ENTGEISEAIVNQWIKR 61

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQALT 136
                   +++   +S ++ FL+YL+ +              K S+S +P   +E++   
Sbjct: 62  LHQVN-APKTVSDKVSYLRKFLRYLQYKGYVVFMP----DCPKTSDSYMPYVFSEEEIQI 116

Query: 137 LV----DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           L+         H + +T+  D     +L +L GCG R+ E L+   +++      + I+ 
Sbjct: 117 LLSSADQWCDRHKNSKTRQADMEFCMLLRMLLGCGFRLGEPLTAKVKDVNFSSGIILIRH 176

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG--IRGKPLNPGVFQRYIRQL 250
             +  +    +      +LE Y +    +    +  LF      G   + G+F    R L
Sbjct: 177 AKNNKQRAIPMNETLTEMLERYCIAMG-IKAEPESYLFPSPVKEGAAASKGIFDLRFRNL 235

Query: 251 RRYLGL-------PLSTTAHTLRHSFATH-LLSNGGDLRS-------IQSILGHFRLSTT 295
               GL             H  RH FA H       + RS       +   LGH  +  T
Sbjct: 236 LMETGLYVPGKAHSRGQCLHCFRHYFAIHSFAQAEKNGRSTDDSVPFLSVYLGHHDMDET 295

Query: 296 QIYTNVNSKNGGDWM 310
           + Y   N     ++M
Sbjct: 296 EKYLKFNGDMFPEYM 310


>gi|221140347|ref|ZP_03564840.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|258452366|ref|ZP_05700376.1| phage integrase [Staphylococcus aureus A5948]
 gi|282904663|ref|ZP_06312538.1| integrase [Staphylococcus aureus subsp. aureus C160]
 gi|282909331|ref|ZP_06317147.1| phage integrase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|283958775|ref|ZP_06376221.1| integrase [Staphylococcus aureus subsp. aureus A017934/97]
 gi|284025051|ref|ZP_06379449.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           132]
 gi|304379190|ref|ZP_07361933.1| integrase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|257859953|gb|EEV82791.1| phage integrase [Staphylococcus aureus A5948]
 gi|282326899|gb|EFB57196.1| phage integrase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282594912|gb|EFB99888.1| integrase [Staphylococcus aureus subsp. aureus C160]
 gi|283789815|gb|EFC28637.1| integrase [Staphylococcus aureus subsp. aureus A017934/97]
 gi|302333670|gb|ADL23863.1| bacteriophage integrase [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302751899|gb|ADL66076.1| bacteriophage integrase [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304342236|gb|EFM08132.1| integrase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|320143657|gb|EFW35435.1| site-specific recombinase, phage integrase family [Staphylococcus
           aureus subsp. aureus MRSA177]
          Length = 345

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 112/278 (40%), Gaps = 18/278 (6%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           + T + Y    +          + KI    + +++    + FI+    +   + +++++ 
Sbjct: 74  ENTYRHYRNALQH-------IQKHKIGKMELSKINRQVYQKFINDYSKEHAKE-TIRKTN 125

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             I+S L       +  ++    + N K         +E++    V    +   H  K  
Sbjct: 126 GAIRSALDDALYDGLIFKNPAYKV-NYKAGKP---TKSEQEKFISVTEYEILKDHVRKKR 181

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
              + A+  ++   G R+S A ++  ++I   ++T+ I  +        +  S+ K+ ++
Sbjct: 182 TRSSLALF-IMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYI--SIAKSDMK 238

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +         ++    +F+      +N       ++   R   +P+  T+H LRH+  ++
Sbjct: 239 HIMDVISTFAISYDGYIFKEAGSI-INLHAINNALKSACRVNNIPI-ITSHALRHTHCSY 296

Query: 273 LLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDW 309
           LL+ G  +  I   LGH  ++ TT +Y+++  +   + 
Sbjct: 297 LLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEE 334


>gi|60683282|ref|YP_213426.1| putative phage integrase [Bacteroides fragilis NCTC 9343]
 gi|60494716|emb|CAH09518.1| putative phage integrase [Bacteroides fragilis NCTC 9343]
          Length = 409

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/300 (16%), Positives = 112/300 (37%), Gaps = 24/300 (8%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
             ++ +++ +  +I +G ++ T +    D +  L+F+   T++ I    I +L  + I  
Sbjct: 112 FREQIESYKE--KIGKGKAESTYRGLVADYKSLLLFMK--TQKNIEDIAIDELEKSFIED 167

Query: 74  FISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + +    T    + +    ++ +K  +   +++         +    K        L E+
Sbjct: 168 YYTWMLGTAGNANATAFNRVNTMKWLMYIAQEKGWLRVHPFTSFE-CKPEYKKRSFLTEE 226

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ--NIMDDQSTLRI 190
           +   ++   L +              +   +   GL  ++  ++T    +   D  T  +
Sbjct: 227 ELQRIIHVDLKYKRQRAM------RDMFLFMCFTGLAYADLRAITYDNIHTDSDGGTWLM 280

Query: 191 --QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
             + K     +V LLP   + I +Y      D   +    +F       +        +R
Sbjct: 281 GNRIKTGVAYVVKLLPIAIELIEKY---RGVDEKKDSPDCVFPVGEYNTMFLS-----LR 332

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
            + +        T H  RH+FA   +  G  L ++Q +LGH  + +TQ+Y  + +   G+
Sbjct: 333 IIGKKCDCHTEVTPHIGRHTFAVLAILKGMPLETLQKVLGHNSILSTQVYAELINPKVGE 392


>gi|325298304|ref|YP_004258221.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317857|gb|ADY35748.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 435

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 56/324 (17%), Positives = 126/324 (38%), Gaps = 28/324 (8%)

Query: 13  ELLKER-QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           EL +E  +++ + + I R  +  +L+ ++   +    F+       +    ++QL Y+ I
Sbjct: 118 ELYREYMEDYAKRIGINR--APGSLKGHKASYKTLQKFVNDCYG--LEDIPLKQLDYSFI 173

Query: 72  RAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
             + +  RT       +++  +  +K+  +    +     +   +    +K+    R L 
Sbjct: 174 EKYDNFLRTGMGYSVATVEGYIIKLKTMTRTALAQGTIRYNPFASFI-PEKALRRHRHLT 232

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTLR 189
             +   L+     +T  + K++       ++  +  G+   +  +L+  N+  D +  L 
Sbjct: 233 MDELQKLM-----NTPIQDKFLCRMRDLFIFSTF-TGISYIDMCNLSMGNVSKDTKGNLW 286

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           ++ K    R       V + +     +        I   LF       L        + +
Sbjct: 287 LKFK----RQKTKSECVIRLLDIPRRIMEKYEGERIGNKLFNMPCRSALTNN-----MPK 337

Query: 250 LRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           L +  G+    T H  RH+F T + LS G  L ++  ++GH  +STTQIY  +  +   +
Sbjct: 338 LAKLCGIERRLTYHMARHNFGTLITLSQGVPLETVCQMMGHKNMSTTQIYARLTHQKVDE 397

Query: 309 WMMEIYD----QTHPSITQKDKKN 328
            + ++      +       KDK+N
Sbjct: 398 DIKKLTKRIGSKFQMPEWNKDKEN 421


>gi|307277175|ref|ZP_07558279.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX2134]
 gi|312905113|ref|ZP_07764234.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0635]
 gi|306506105|gb|EFM75271.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX2134]
 gi|310631503|gb|EFQ14786.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0635]
          Length = 393

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 79/232 (34%), Gaps = 33/232 (14%)

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSN--SLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
             L+Y    +    + +      +K       +  ++++   L+D           + + 
Sbjct: 153 QILRYGVAMQYIDNNPMEKTLLPRKKEYEKNRKFYSKEELNDLLDAF-------KDFGNM 205

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------------GDKIR 198
           +  A   LL   G+R SE L+L  ++I      L +                       R
Sbjct: 206 KQYAFFRLLAYTGMRKSEVLALQWKDIDTFNKELHVNKTLAVDEFGNVIIQSPKTRASRR 265

Query: 199 IVPLLPSVRKAILEYYDLCPFDL------NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           ++ L       +  +      +         + +  +F  ++     P     ++R + +
Sbjct: 266 VISLDTETLSILNNWKLQQKEEYLKLGYNTSSKEQHVFTTVKNTLYIPNTVNDWLRYILK 325

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
              LP   T H  RH+ A+ LL  G  ++ +Q  LGH     T  IY ++ +
Sbjct: 326 KYNLPR-ITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLDIYAHITN 376


>gi|317505706|ref|ZP_07963597.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
 gi|315663175|gb|EFV02951.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
          Length = 308

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 105/277 (37%), Gaps = 26/277 (9%)

Query: 50  LAFYTEEKITIQTIR--QLSYTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRK 106
           +  Y  E++ ++ IR   L Y  I       +  +K+   +++  +  +K  +   +++K
Sbjct: 30  IEAYLRERLGLEDIRYSSLDYGFIEGMDFYLKSERKLSLATIQVVVIFLKKLIGIGQQKK 89

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
                   + +  +  +   R L  ++   ++   ++    E          +       
Sbjct: 90  YIRIDPFADYKA-ELPHRTRRYLTTEELQRVLQTPIIDKQFERA------RQLFLFCAFT 142

Query: 167 GLRISEALSLTPQNIM---DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           GL   +   L P++I+   D    +RI + K D   I+PLLP   + +  Y        N
Sbjct: 143 GLARVDMQRLKPKHIIRNADGTEEIRIKRQKTDVEAIIPLLPIAGQILSLYI------KN 196

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLR 281
                 +F       L           + +   +    T H  RH+F+T   LSNG  + 
Sbjct: 197 KKADELIFPN-----LTIRKASFACVNIGQICRIEKGLTFHMARHTFSTTICLSNGISME 251

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           ++  +LGH  + TTQIY  +      + M  + D+ H
Sbjct: 252 TLSKMLGHSNIGTTQIYGKITDHKIQEDMTALADREH 288


>gi|227528951|ref|ZP_03959000.1| bacteriophage integrase [Lactobacillus vaginalis ATCC 49540]
 gi|227351124|gb|EEJ41415.1| bacteriophage integrase [Lactobacillus vaginalis ATCC 49540]
          Length = 364

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 100/291 (34%), Gaps = 22/291 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L+    NW+   + ++ LS++TL  Y+        F             I+ ++  + + 
Sbjct: 61  LVDYYNNWVNTYKKDK-LSEITLDRYKYTGEALKGFFHD--------DKIKSITRVKYQE 111

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA--LNE 131
           FI++         ++K+  S I++ +K         +     +      + + +   LN 
Sbjct: 112 FINQ-YGATHAPTTVKKVNSIIRACVKSAILDDYLYKDFTQRVELTANKDKVVKVDYLNL 170

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           K+   L+      T          +  ++      G+R++E  +LT  +I     T+ I 
Sbjct: 171 KEIHQLL---TAATDKIEHRPGFTSRFMIVTAIYTGMRLAEIQALTWNDIDWLHQTININ 227

Query: 192 GKGDKIRIVPLLPSV------RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
              D                  K   E         +      +F              +
Sbjct: 228 KSWDMKTHDFKPTKTESSNRKIKVNPELLHYLKILQDNRQSNLVFMNQYKSIPTSNAVNK 287

Query: 246 YIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            +R L   L +   +   H+LRHS    LL+NG DL +I   LGH  +S T
Sbjct: 288 TLRSLLESLNIDRRNFHFHSLRHSHVALLLANGIDLYAISKRLGHSNISIT 338


>gi|229551179|ref|ZP_04439904.1| phage integrase [Lactobacillus rhamnosus LMS2-1]
 gi|229315471|gb|EEN81444.1| phage integrase [Lactobacillus rhamnosus LMS2-1]
          Length = 385

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 110/302 (36%), Gaps = 36/302 (11%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
            T++  E    +       +       + I  ++  +++   + +R  +    + KR  +
Sbjct: 84  NTVR--ESTWARTAGMFNNHILPAFGGKRIATITTKDVQK--AVKRWFEFTSANYKRWYN 139

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSN---SLPRALNEKQALTLVDNVLLHTSHETK 150
            + S + Y  ++   +++    +      +     P     K+ +      +   +H   
Sbjct: 140 YVSSVMDYAVRQGYMSKNPAKAIVLPHHDDLAGDKPENFWTKEQMNHFFACIDQENHFDV 199

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------------G 194
           +I      +  +L   G+R  E L+LT  ++   ++++++                    
Sbjct: 200 FI------MFRVLAFTGVRRGELLALTWNDVSFKENSIKVNKTLTQGDKGHQIVQAPKTR 253

Query: 195 DKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIR 248
              R +P+       +  +          L +N   P   LF   +    +     + + 
Sbjct: 254 AGRRTIPVDGQTMAYLKRWRRIQQETFIQLGINTMQPNQLLFTNTKNGYQSLNTPSKRLH 313

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGG 307
           +L+   GL    T H  RHSF ++LL  G  + S+Q ++GH   + T  +Y +V++K   
Sbjct: 314 KLQDDNGLTPRITIHGFRHSFISNLLIAGVPVTSVQKLVGHTDPTITLGVYAHVSAKQES 373

Query: 308 DW 309
           + 
Sbjct: 374 EA 375


>gi|223369864|gb|ACM88800.1| integrase [uncultured bacterium]
          Length = 163

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/111 (34%), Positives = 53/111 (47%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            G G+      L    R A  ++     F        P     R   L+    QR +++ 
Sbjct: 52  NGYGEVYLPEALSRKYRGANRDFVWQFLFPSKSISTDPRSGERRRHHLSEDSLQRAVKKA 111

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                +    + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 112 LVKSEINKRGSCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|89147353|gb|ABD62537.1| integrase [uncultured bacterium]
          Length = 163

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 37/110 (33%), Positives = 54/110 (49%)

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G G+      L    + A  E+     F      + P    +R   ++    QR ++   
Sbjct: 53  GYGETYLPYALERKYKNASREWAWQYIFPATKISRDPRSGKMRRHHVDEKSLQRAVKGAV 112

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R   +  + T HT RHSFATHLL NG D+R++Q +LGH  + TT IYT+V
Sbjct: 113 RAARIDKTATCHTFRHSFATHLLKNGHDIRTVQELLGHKDVRTTMIYTHV 162


>gi|323937177|gb|EGB33457.1| phage integrase [Escherichia coli E1520]
          Length = 375

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 93/254 (36%), Gaps = 17/254 (6%)

Query: 47  LIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK 106
           L  L  Y       + +R ++  E+  + +  R +K+   ++ R L+ +        +  
Sbjct: 117 LSKLNLYVRPFWGKRQLRDITAGELEQYAAGLR-EKLRPSTVNRILAILSKICSLAVRAG 175

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
             T S + ++R LK++N   R L+  +    ++     T+ +T   D+     + L    
Sbjct: 176 WITHSPMSHVRYLKENNIRYRTLSATEIPRFIN---AATALQTPAADS-----ILLALYT 227

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226
           G+RI E  +L  +    D   L +             P    AI          L+    
Sbjct: 228 GMRIGEVCTLKWEYWHPDMHQLILPDTKSG--HPFTCPLAPPAIAVVQCQQDLMLSKTYI 285

Query: 227 LP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
            P L    R        F R    + R   +  +   H LR +FAT +L   GD+     
Sbjct: 286 FPQLTDNARPLAYPRATFAR----ICRDANID-NLRMHDLRRTFATRVLQATGDIAIASH 340

Query: 286 ILGHFRLSTTQIYT 299
           +L H  L+ T+ Y 
Sbjct: 341 LLNHHSLTATRRYA 354


>gi|302023189|ref|ZP_07248400.1| integrase [Streptococcus suis 05HAS68]
          Length = 359

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/300 (14%), Positives = 104/300 (34%), Gaps = 52/300 (17%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           +  +  +R        +YE   + + +              + +LSY  I  F    +T+
Sbjct: 81  ISYISTQRN-------NYERHIKPYFLN-----------TNLNKLSYEHIFEFREHLKTK 122

Query: 82  K--------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
                    +   ++ + +  +K       ++ +  ++ + N+R L  S    +  + ++
Sbjct: 123 SKKQNDSVTLSHNTVNKIMILLKKIFDTGVRKSLIDKNPVENLRKLPISKPTIKFWSVEE 182

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                +   L TS E  +          + +  G+R+ E L+L   +I    +T+ I   
Sbjct: 183 FN---EFRKLITSDEISYN-----LFFTIAFFTGMRLGEILALNWYDINLITNTIHITKT 234

Query: 194 ---------------GDKIRIVPLLPSVRKAILEYYDLCPFDLN---LNIQLPLFRGIRG 235
                              R + +   + + + ++ +     L     + +         
Sbjct: 235 AYFVHGTNHINSTKTRAGTRHITINHKLARMLGDWKEKQSDLLKEFTTDTESLQVIQSTP 294

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            P+   +  +  +Q+            H LRHS A+ L++ G D   ++  LGH  ++TT
Sbjct: 295 LPITKNMIDKKFKQILARNNYLKKIRIHDLRHSHASLLINQGEDYLVVKERLGHASITTT 354


>gi|223369800|gb|ACM88769.1| integrase [uncultured bacterium]
          Length = 163

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 66/162 (40%), Gaps = 37/162 (22%)

Query: 177 TPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS---VRKAILEYYDLCPFDLNLNIQLP---- 228
             +++  D   + +  GKG K R   L        K ++E   L   D NL    P    
Sbjct: 1   RVKDVDFDNGCITVHDGKGGKSRNSLLPTRLILAIKQLIEQARLIQQDDNLQGVGPSLPF 60

Query: 229 -----------------LFRG-----------IRGKPLNPGVFQRYIRQLRRYLGL-PLS 259
                            +F             +    L+  V ++ ++   +  G+    
Sbjct: 61  ALDRKYPSAYRQAAWMFVFPSSTLCNHPYNGKLCRHHLHDSVARKALKAAVQKAGIVSKR 120

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|254467274|ref|ZP_05080685.1| phage integrase [Rhodobacterales bacterium Y4I]
 gi|206688182|gb|EDZ48664.1| phage integrase [Rhodobacterales bacterium Y4I]
          Length = 392

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 95/296 (32%), Gaps = 27/296 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + +    ER     T + Y      F++         +    +  +   +I     K 
Sbjct: 102 ERFFEAHAKER-CKPSTQKEYRRAIDLFIV-------PALGSFKVVDVERRDIAELHHKF 153

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALT 136
           R +        R+L  +       +   +  +  +   ++   ++     R L++ +   
Sbjct: 154 RDKPYQA---NRTLGVLSKMFNLAEIWGLRPDGSNPCRHVPKYREVKRE-RFLSQPELQR 209

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L    +L              A   LL   G R+ E  +L    I  +   L        
Sbjct: 210 L--GQVLSEVEREGSETPHMVAAFRLLILTGCRLGEIQTLKWDYITANGMEL--PDSKTG 265

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R +PL    R  +          L  +   P     +         Q   R++R   GL
Sbjct: 266 ARRIPLPQPARDVL--------ARLPRSPGNPYVIEGKLPGQYATDLQHPWRRIRDRAGL 317

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                 H LRH++A++ +S G  ++ +  +LGH ++ TT  Y ++          E
Sbjct: 318 A-GVRIHDLRHTYASNAVSAGMPIQMVGRLLGHTQIQTTMRYAHLADDPVRQAAEE 372


>gi|152985069|ref|YP_001349880.1| phage integrase family site specific recombinase [Pseudomonas
           aeruginosa PA7]
 gi|150960227|gb|ABR82252.1| site-specific recombinase, phage integrase family [Pseudomonas
           aeruginosa PA7]
          Length = 449

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 47/318 (14%), Positives = 109/318 (34%), Gaps = 36/318 (11%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           L + + ++Y    R  +              +++++++  I  +  +   Q +  RS   
Sbjct: 16  LREASQKTYRSAARALIRHFG-------PAVSVQEITHRNILEWRREVLEQGLSKRSWNT 68

Query: 91  SLSGIKSFLKYLKKRKITTE---SNI--LNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
             S +++   +  + ++ T    +      +   K+ +    AL+  Q       V   +
Sbjct: 69  YSSHLRTIWGHAIESELLTHTQVNPFNKTGVIPPKRPSKT-VALDAIQNARAWLKVQESS 127

Query: 146 SHETKW-----IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKI 197
            H T              +    Y  G+R++  L +   ++  D   + ++G   K  + 
Sbjct: 128 EHCTGERAQITPAWFWRCVFETFYDTGIRLNALLCIRKCDVQWDNRIIVVRGETEKTHRE 187

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG-----VFQRYIRQLRR 252
             +P+   +   I    +        +              +         +   R+L  
Sbjct: 188 FSIPITDGMAPHIHRLLNEAETAGIKSTDQLFNVNRFSPHYSRQEMNSDQVEAMYRKLTE 247

Query: 253 YLGLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            +G+    T H  RH+ A+ L+     ++   +S+L H  + TT  Y  V+     D M 
Sbjct: 248 KVGV--RMTPHRFRHTLASDLMKQPKRNIHVAKSLLNHSNIQTTMSYIEVD----LDQMQ 301

Query: 312 EIYD---QTHPSITQKDK 326
            + D   Q H ++  + K
Sbjct: 302 AVLDERRQAHDALRHRHK 319


>gi|18092647|gb|AAL59385.1|AF458082_1 IntI [Citrobacter freundii]
          Length = 193

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 76/184 (41%), Gaps = 27/184 (14%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLDQLRERIRYL----HYSLRTEQAYVNWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QSTL 188
           +   
Sbjct: 162 KGEF 165


>gi|317505161|ref|ZP_07963098.1| putative tyrosine type site-specific recombinase [Prevotella
           salivae DSM 15606]
 gi|315663721|gb|EFV03451.1| putative tyrosine type site-specific recombinase [Prevotella
           salivae DSM 15606]
          Length = 422

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 108/277 (38%), Gaps = 26/277 (9%)

Query: 50  LAFYTEEKITIQTIRQ--LSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRK 106
           +  Y  E++ ++ IR   L Y  I       ++++ +   +++ ++  ++  +   +++K
Sbjct: 144 IEAYLRERLGLEDIRYSLLDYGFIEGLDFYLKSERNLSLATIQVAVIFLRKLIGIGQQKK 203

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
                   + +  +  +   R L  ++   L+   ++    E          +       
Sbjct: 204 YIRIDPFADYKA-ELPHRTRRYLTTEELQRLLQTPIIDRQFERA------RQLFLFCAFT 256

Query: 167 GLRISEALSLTPQNIM---DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           GL   +   L P++I+   D    +RI + K D   I+PLLP  ++ +  Y        +
Sbjct: 257 GLARVDMQRLKPKHIIHNADGTEEIRIKRQKTDVEAIIPLLPIAKQILSLYI------KD 310

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLR 281
                 +F       L           + +   +    T H  RH+F+T   LSNG  + 
Sbjct: 311 KKADDLIFPN-----LTIRKASFACVNIGQICRIEKGLTFHMARHTFSTTICLSNGISME 365

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           ++  +LGH  + TTQIY  +      + M  + D+ H
Sbjct: 366 TLSKMLGHSNIGTTQIYGKITDHKIQEDMTALTDREH 402


>gi|291515320|emb|CBK64530.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 407

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 63/274 (22%), Positives = 108/274 (39%), Gaps = 17/274 (6%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT- 108
           L  +  +K    T  Q+    + AF    R++   + +L   +  +++      K KI  
Sbjct: 137 LKSFNADKPLSYTFGQIDEAFLSAFEGWMRSKGNKETTLSFQMRTLRAMFNRAIKAKIVS 196

Query: 109 -TESNILNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
             ++     +  K +   P+ AL++   + ++D        + K I+     I    Y C
Sbjct: 197 REKNPFNEYKISKFNTRTPKRALSKADMMKIID----ADCSQGKEIEQFAHDIFVFSYLC 252

Query: 167 G-LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           G +   +  +LTP NI  D   +  + K      VPL    +  I +Y   C     L  
Sbjct: 253 GGISFVDIANLTPANIA-DGRLIYHRQKTHGAINVPLSEKAKAIIGKYDSHCEQAGYLFP 311

Query: 226 QL-------PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
            L       PL +  R   +        +R + + L +  + T +  RHSFAT L  +G 
Sbjct: 312 ILDERVHITPLQKKNRVHKMCSR-VNVALRNIAKRLKIKATVTTYVARHSFATVLKKSGV 370

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           ++  I   LGH  L TTQIY +    +  D  M+
Sbjct: 371 NIGIISEALGHHSLKTTQIYLDSFENSQIDAAMQ 404


>gi|189467538|ref|ZP_03016323.1| hypothetical protein BACINT_03928 [Bacteroides intestinalis DSM
           17393]
 gi|189435802|gb|EDV04787.1| hypothetical protein BACINT_03928 [Bacteroides intestinalis DSM
           17393]
          Length = 333

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 86/251 (34%), Gaps = 32/251 (12%)

Query: 71  IRAFISKRRTQKIGDRSLKR-----SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
            R ++   +  K  +R +         S  +  LK   + K   E+    +  ++  +  
Sbjct: 104 FREYLLNAKQLKHSNRPISLNSASGYYSTFRGLLKIAYRDKWFRENINDYLDKIEPQDVK 163

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--- 182
              L   +   L           T        A        GLRIS+ L+L  ++     
Sbjct: 164 KEYLTLDEVKQL---------AATPCDIPVLKAASLFACLTGLRISDILNLQWEDFTIAP 214

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           D    LRI+ +  +           +A L                 +F+      L   +
Sbjct: 215 DQGYCLRIRTQKTQT----------EATLPISYEAYELCGTPGTGKVFKD-----LKRSM 259

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               ++   +  G+    T H  RHS+A   +S G D+ ++  +L H  +STTQIY ++ 
Sbjct: 260 INYPLKSWLKKAGITKPITFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLV 319

Query: 303 SKNGGDWMMEI 313
           +    +   +I
Sbjct: 320 NSKKRETANKI 330


>gi|254286498|ref|ZP_04961455.1| Int [Vibrio cholerae AM-19226]
 gi|150423447|gb|EDN15391.1| Int [Vibrio cholerae AM-19226]
          Length = 345

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 59/295 (20%), Positives = 112/295 (37%), Gaps = 29/295 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-----LSYTEIRAFISKR----- 78
           R LS+L    ++            Y +  +TI+ +        +  +  AF + R     
Sbjct: 62  RRLSELLETWWQVHGHTIKSGKVVYRKTALTIKELGDPIASTFTSKQYLAFRASRVSHFN 121

Query: 79  -RTQKIGDRSLKRSLSGIKSFL-KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              + +        L+ +     + +K ++    + + ++  +K +      L++     
Sbjct: 122 KENKSLSPTYQNFQLNLLSGMFSRLIKYKQWNLPNPLDDIEPIKVNQRALAYLDKADIQP 181

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
            ++ +    S            I  +    G RISEALSL    I + + T  ++ KG +
Sbjct: 182 FLERLGCFESEGRSVSIPEIVLIAKICLATGARISEALSLERSQISEFKLTF-VETKGKR 240

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           IR VP+  ++ K I+               L      +      G   RYI++      +
Sbjct: 241 IRSVPISENLYKEIM---------------LASSSSTKIFSTTYGSAHRYIKKALPDY-V 284

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           P     H LRH+FATH + N GD+  +Q ILGH ++  T  Y + +  +    + 
Sbjct: 285 PEGQATHVLRHTFATHFMMNRGDILILQRILGHQKIEQTMAYAHFSPDHLIQAVQ 339


>gi|255014532|ref|ZP_05286658.1| integrase [Bacteroides sp. 2_1_7]
 gi|293370765|ref|ZP_06617311.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292634125|gb|EFF52668.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 401

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 53/302 (17%), Positives = 111/302 (36%), Gaps = 49/302 (16%)

Query: 19  QNWLQNLE--IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           +++L   +  + R  +K    +Y+          + +   K T + +  +   + + ++ 
Sbjct: 93  EDFLAYFKNIVNRNFAKC-DAAYKH--------FSRFCHNKCTFEMLDTVFCNKYKEYLL 143

Query: 77  K---------RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
                        + I   +     +  K  L    + +   ++    + N+  +  + +
Sbjct: 144 DTKVSARGKVMVNKPISRNTASAYWNIFKQVLTKAYRERRLVDNIASLLDNIPCTIPVKQ 203

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----MD 183
           +L+ ++   L ++       E      R +AI   L   GLRIS+ L+L  +NI      
Sbjct: 204 SLSLEEVRKLYNS-------ECSVPVVRKAAIFSCL--SGLRISDILNLKWENIQTYADG 254

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
                    K  +   VP+     + I                  +F G      N  + 
Sbjct: 255 GHYLDFKCVKTQRQTQVPIGDDAYELIQ----------PQTTDKYIFSG-----FNRTMT 299

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT-NVN 302
            R ++   +  G+    T H  RH++A+  L  G D+ ++Q +L H  +STTQIY  + +
Sbjct: 300 YRVMQDWIKECGIKKHITFHCFRHTYASLQLELGTDIYTVQHLLNHKNVSTTQIYASHAD 359

Query: 303 SK 304
            K
Sbjct: 360 PK 361


>gi|94442276|dbj|BAE93637.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 47/91 (51%)

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            E+     F        P    IR   L+ G  Q+ +++  R  G+      HTLRH FA
Sbjct: 71  REFKWQFLFPSGRLSADPYGGRIRRHHLHEGTLQKSVKKAARGCGINKRVGCHTLRHCFA 130

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           THLL    D+R++Q +LGH  +STT IYT+V
Sbjct: 131 THLLEANHDIRTVQELLGHAHVSTTMIYTHV 161


>gi|284048509|ref|YP_003398848.1| integrase family protein [Acidaminococcus fermentans DSM 20731]
 gi|283952730|gb|ADB47533.1| integrase family protein [Acidaminococcus fermentans DSM 20731]
          Length = 309

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 113/297 (38%), Gaps = 54/297 (18%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q+WL+ L  E  +  LT  +Y+    Q +   A Y E + T+    QL    + A     
Sbjct: 39  QSWLERLLPELRVQDLTRLAYQ----QLINDYAQYHERQTTMDFHHQLKGAILDA----- 89

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN--MRNLKKSNSLPRALNEKQALT 136
                                       +          ++ +       + LN+ Q  T
Sbjct: 90  ------------------------VDEGLIQRDPTRKVIIKGMAPREKKIKYLNQFQLHT 125

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+ ++ L       W        + L+   G+R SEAL+LTP +      T+ I    + 
Sbjct: 126 LLKHLDLGERVNWDW-------FILLVAKTGMRFSEALALTPDDFDFAHQTVCINKTWNY 178

Query: 197 IRIVPLLP-----SVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIR 248
                 LP     S+RK  +++  +  F +   +L  ++P F  I    L        + 
Sbjct: 179 KGNGGFLPTKNRSSIRKIQIDWKTVMQFAVLTDSLPKEVPFF--IHKGKLYNSTVNNILE 236

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           +  + L +P+  + H LRH+ A+ LL  G  + S+   LGH  ++TTQ  Y ++  +
Sbjct: 237 RHCKRLEIPI-ISIHGLRHTHASLLLFAGVSIASVARRLGHASMTTTQKTYLHIIQE 292


>gi|239983801|ref|ZP_04706325.1| integrase [Streptomyces albus J1074]
 gi|239983807|ref|ZP_04706331.1| integrase [Streptomyces albus J1074]
 gi|291455603|ref|ZP_06594993.1| phage integrase [Streptomyces albus J1074]
 gi|291455609|ref|ZP_06594999.1| phage integrase [Streptomyces albus J1074]
 gi|291358552|gb|EFE85454.1| phage integrase [Streptomyces albus J1074]
 gi|291358558|gb|EFE85460.1| phage integrase [Streptomyces albus J1074]
          Length = 385

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 65/326 (19%), Positives = 131/326 (40%), Gaps = 45/326 (13%)

Query: 2   EGNNLP-EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           E N +P    ++ L +    WL+++ ++      T   YE   R +L+         + +
Sbjct: 57  ERNGVPVPSRTWSLGEWLAYWLEHI-VKPNREHNTYVKYESKVRLYLVPH-------LGM 108

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           + + +L+  ++R+F+++ +  ++   +    L  +++ L    + ++ T +    +   K
Sbjct: 109 KPMARLTPAQLRSFMAELKRTEVPPAARFEVLRVLRNALNRAVREELLTRNVAELVDMPK 168

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
            +    +  + ++A+  + +   H          R  A   L+   GLR SE L L  Q+
Sbjct: 169 VTKKEAKPWSAREAIAFLRSARAH----------RLYAACVLVLVLGLRRSEVLGLRWQD 218

Query: 181 IMDDQSTL-------RIQGKG---------DKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
           I  DQ          R++G G             ++PL     +A+ E  +L   +  + 
Sbjct: 219 IDFDQRQFTPLKQVQRVKGIGLVLKDLKTESSHAVLPLPEFCARALKERRELQDLERRIV 278

Query: 225 IQLP--------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
                       +F   RG P++P  F R    L +  G+    T    RH+  T L   
Sbjct: 279 GDAWSQEAGQDLIFSSERGGPIDPVGFSRTFNALVKRAGV-RRITVRLARHTCGTLLAFL 337

Query: 277 GGDLRSIQSILGHFRLSTTQ-IYTNV 301
               +  Q+IL H ++S T  +YT+V
Sbjct: 338 KVHPKVAQAILRHSQISMTMDVYTHV 363


>gi|237726755|ref|ZP_04557236.1| tyrosine type site-specific recombinase [Bacteroides sp. D4]
 gi|229435281|gb|EEO45358.1| tyrosine type site-specific recombinase [Bacteroides dorei
           5_1_36/D4]
          Length = 443

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 94/280 (33%), Gaps = 21/280 (7%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKS 97
           Y    R    FL      +++   ++Q+    I  F    RT ++   +++   ++ +KS
Sbjct: 139 YTNTYRHLATFLKDKY--RLSDMPVKQMDENFIEDFDMYMRTVKRFMPKTILGHVNRLKS 196

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
            +     R I   S     R  +K       L E++     +                  
Sbjct: 197 VMMLAVFRGIIPFSPFKGYR-PQKPEFKQMYLTEEELGKFANMTY------DTPNRNFTR 249

Query: 158 AILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
            +       G+   +  +LT +N++  +  +L I       R     P   + +     +
Sbjct: 250 DMFLFSCWTGICYCDMRALTEKNLVKAEDGSLWIHT----ERQKTGTPECIRLMEIPLAI 305

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF-ATHLLS 275
                 ++    L        L       +++++    G+    + H  RH+F +   LS
Sbjct: 306 LEKYKGMDTGGRLLP-----MLTKESMNIHLKKMAVMCGINRPISFHQARHTFGSIICLS 360

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
            G  + ++  I+GH  + TTQ Y  V        +  + D
Sbjct: 361 QGIPIETVSKIMGHKHIKTTQRYAKVTQDKIDRDVDRLND 400


>gi|197302009|ref|ZP_03167072.1| hypothetical protein RUMLAC_00739 [Ruminococcus lactaris ATCC
           29176]
 gi|197298957|gb|EDY33494.1| hypothetical protein RUMLAC_00739 [Ruminococcus lactaris ATCC
           29176]
          Length = 308

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 61/297 (20%), Positives = 108/297 (36%), Gaps = 54/297 (18%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q W++ L  E  + +LT  +Y+    + L   A   E + T+    QL    + A     
Sbjct: 39  QKWVEKLAPELKVCELTRTAYQ----KLLNDYAKDHERQTTLDFHHQLKGAILDA----- 89

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN--MRNLKKSNSLPRALNEKQALT 136
                                       +          ++         + LN+ +  T
Sbjct: 90  ------------------------VDEGMIERDPTRKAIIKGKSPRAKKIKYLNQFELHT 125

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L+ ++ +       W        + L+   G+R SEAL++TP +    + TL I    D 
Sbjct: 126 LIAHLDIREEVNWDW-------FILLVAKTGMRFSEALAITPSDFDFARQTLSISKTWDY 178

Query: 197 IRIVPLLP-----SVRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
                 LP     SVRK  +++  +  F     NL    P+F G     +        + 
Sbjct: 179 KGNGGFLPTKNNSSVRKIQIDWQIVVKFSELTKNLPEDKPIFVG--ETKIYNSTVNDVLT 236

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           +  +  G+    + H LRH+ A+ LL  G  + S+   LGH  ++TTQ  Y ++  +
Sbjct: 237 RHCKACGIS-EISIHGLRHTHASLLLFAGVSIASVARRLGHASMTTTQKTYLHIIQE 292


>gi|86750236|ref|YP_486732.1| Phage integrase [Rhodopseudomonas palustris HaA2]
 gi|86573264|gb|ABD07821.1| Phage integrase [Rhodopseudomonas palustris HaA2]
          Length = 364

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 53/271 (19%), Positives = 97/271 (35%), Gaps = 18/271 (6%)

Query: 45  QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK 104
           Q +  L     E+   + IR L  ++   F   R        +++ +L+ I +  ++L  
Sbjct: 96  QEVAMLQMLAREEFAQKRIRDLMVSDFADFRDARDKAGKSASTIRNNLNTISAVYEWLIH 155

Query: 105 RKITT-ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE--TKWIDARNSAILY 161
            K     + I ++R  ++    P    E++ L   +  +     E        +  A+  
Sbjct: 156 EKAVDIANPIASLRKRRRGVPQPTGHRERRLLDGEEEAIAQAIEELPVDPTRRQWRALFP 215

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           LL   G+R+ EA+S+    I  D   + I   K   +R V L       +LE  D  P D
Sbjct: 216 LLLDTGMRLGEAISIECAWIRRDYGFVFIPDSKNGSVRHVALSDRAYAGLLELTDGEPAD 275

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQ-LRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
             +                P V +   R  +R   G       H LRH   + + + G +
Sbjct: 276 SKV------------FRFTPWVAKDAWRNEIRVRAGCQ-DLRIHDLRHEALSRMAARGAE 322

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           L+++    GH  ++    Y N         +
Sbjct: 323 LKTLMRQSGHKTVAVLMRYLNPTPAEQRARL 353


>gi|307290557|ref|ZP_07570469.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0411]
 gi|306498412|gb|EFM67917.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0411]
 gi|315030231|gb|EFT42163.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX4000]
 gi|315144768|gb|EFT88784.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX2141]
          Length = 393

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 79/232 (34%), Gaps = 33/232 (14%)

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSN--SLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
             L+Y    +    + +      +K       +  ++++   L+D           + + 
Sbjct: 153 QILRYGVAMQYIDNNPMEKTLLPRKKEYEKNRKFYSKEELNNLLDAF-------KDFGNM 205

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------------GDKIR 198
           +  A   LL   G+R SE L+L  ++I      L +                       R
Sbjct: 206 KQYAFFRLLAYTGMRKSEVLALQWKDIDTFNKELHVNKTLAVDEFGKVIIQSPKTRASRR 265

Query: 199 IVPLLPSVRKAILEYYDLCPFDL------NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           ++ L       +  +      +         + +  +F  ++     P     ++R + +
Sbjct: 266 VISLDTETLSILNNWKLQQKEEYLKLGYNTSSKEQHVFTTVKNTLYIPNTVNDWLRYILK 325

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
              LP   T H  RH+ A+ LL  G  ++ +Q  LGH     T  IY ++ +
Sbjct: 326 KYNLPR-ITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLDIYAHITN 376


>gi|299141755|ref|ZP_07034890.1| integrase [Prevotella oris C735]
 gi|298576606|gb|EFI48477.1| integrase [Prevotella oris C735]
          Length = 422

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 109/277 (39%), Gaps = 26/277 (9%)

Query: 50  LAFYTEEKITIQTIR--QLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRK 106
           +  Y  E++ ++ IR   L Y  I       ++++ +   +++ ++  ++  +   +++K
Sbjct: 144 IEAYLRERLGLEDIRYSSLDYGFIEGMDFYLKSERNLSLATIQVAVIFLRKLIGIGQQKK 203

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
                   + +  +      R L  ++   ++   ++    E          +       
Sbjct: 204 YIRIDPFADYKA-ELPYRTRRYLTTEELQRVLQTPIIDRQFERA------RQLFLFCAFT 256

Query: 167 GLRISEALSLTPQNIM---DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           GL   +   L P++I+   D  + +RI + K D   I+PLLP  ++ +  Y        +
Sbjct: 257 GLARVDMQRLKPKHIIYNADGTAEIRIKRQKTDVEAIIPLLPIAKQILSLYI------KD 310

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLR 281
                 +F       L           + +   +  S T H  RH+F+T   LSNG  + 
Sbjct: 311 KKADDLIFPN-----LTIRKASFACVNIGQICRIDKSLTFHMARHTFSTTICLSNGISME 365

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           ++  +LGH  + TTQIY  +      + M  + D+ H
Sbjct: 366 TLSKMLGHSNIGTTQIYGKITDHKIQEDMTALTDREH 402


>gi|268319286|ref|YP_003292942.1| bacteriophage integrase [Lactobacillus johnsonii FI9785]
 gi|262397661|emb|CAX66675.1| bacteriophage integrase [Lactobacillus johnsonii FI9785]
          Length = 390

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 58/286 (20%), Positives = 108/286 (37%), Gaps = 35/286 (12%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
               Q I +++  E++ +  ++  Q +  R      + +    +Y  +    +E+ +  +
Sbjct: 106 DFGNQYIDKITVAELQKWADRKAKQIVKYRDAINEFNAL---FEYGIRLNYVSENPLKRI 162

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              KK++  PR   E    T   + L       K           LL   GLR SEAL+L
Sbjct: 163 IIPKKTSR-PRRDTEHNVYT--RDELNQFLEVAKEYGLVQYTYFKLLSSTGLRKSEALAL 219

Query: 177 TPQNIMDDQSTLRIQGK----------------GDKIRIVPLLPSVRKAILEYYDLCPFD 220
           T Q+I  + +TL +                       RI+P+  S+++ +++Y       
Sbjct: 220 TWQDIDLNNNTLSVNKTLAYGLGGKTIIQSPKSPKSKRILPISDSLKEVLIDYKQKQKIL 279

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQ------LRRYLGLP-----LSTTAHTLRHSF 269
            +          +R    +  +   Y +             L         T H  RH+F
Sbjct: 280 SSKLFHTIKGTYLRMSKPDQWLNSIYAKDHQDKVKYAEKYNLNPLPDLKRITVHGFRHTF 339

Query: 270 ATHLLSN-GGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           AT L++      +++Q +LGH  +  T  IYT++N KN  D +  +
Sbjct: 340 ATLLIAETNVKPKTVQMLLGHENIQMTLDIYTHINKKNTEDAVNAL 385


>gi|257428815|ref|ZP_05605210.1| integrase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257434137|ref|ZP_05610488.1| integrase [Staphylococcus aureus subsp. aureus E1410]
 gi|282914862|ref|ZP_06322643.1| integrase [Staphylococcus aureus subsp. aureus M899]
 gi|282925359|ref|ZP_06333015.1| phage integrase [Staphylococcus aureus subsp. aureus C101]
 gi|293507876|ref|ZP_06667718.1| phage integrase [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510848|ref|ZP_06669548.1| integrase [Staphylococcus aureus subsp. aureus M809]
 gi|293545448|ref|ZP_06672124.1| integrase [Staphylococcus aureus subsp. aureus M1015]
 gi|296277052|ref|ZP_06859559.1| phage integrase [Staphylococcus aureus subsp. aureus MR1]
 gi|257274459|gb|EEV05971.1| integrase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257281063|gb|EEV11207.1| integrase [Staphylococcus aureus subsp. aureus E1410]
 gi|282312993|gb|EFB43393.1| phage integrase [Staphylococcus aureus subsp. aureus C101]
 gi|282321256|gb|EFB51586.1| integrase [Staphylococcus aureus subsp. aureus M899]
 gi|290919759|gb|EFD96831.1| integrase [Staphylococcus aureus subsp. aureus M1015]
 gi|291094939|gb|EFE25207.1| phage integrase [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466320|gb|EFF08846.1| integrase [Staphylococcus aureus subsp. aureus M809]
          Length = 345

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 112/278 (40%), Gaps = 18/278 (6%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           + T + Y    +          + KI    + +++    + FI+    +   + +++++ 
Sbjct: 74  ENTYRHYRNALQH-------IQKHKIGKMELSKINRQVYQKFINDYSKEHAKE-TIRKTN 125

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             I+S L       +  ++    + N K         +E++    V    +   H  K  
Sbjct: 126 GAIRSALDDALYDGLIFKNPAYKV-NYKAGKP---TKSEQEKFISVTEYEILKDHVRKKR 181

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
              + A+  ++   G R+S A ++  ++I   ++T+ I  +        +  S+ K+ ++
Sbjct: 182 TRSSLALF-IMICTGCRVSGARNIKIEHINQVKNTIFIDERKTNTSPRYI--SIAKSDMK 238

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +         ++    +F+      +N       ++   R   +P+  T+H LRH+  ++
Sbjct: 239 HIMDVISTFAISYDGYIFKEAGSI-INLHAINNALKSACRVNNIPI-ITSHALRHTHCSY 296

Query: 273 LLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDW 309
           LL+ G  +  I   LGH  ++ TT +Y+++  +   + 
Sbjct: 297 LLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEE 334


>gi|89147614|gb|ABD62666.1| integrase [uncultured bacterium]
          Length = 163

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 36/111 (32%), Positives = 52/111 (46%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +G GD      L    R A  E+     F        P          +    QR ++  
Sbjct: 52  KGHGDVHLPYALERKYRNASKEFIWQYVFPAEKLSVDPRSGRPGRHHASEQNIQRAVKDA 111

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            R  G+  + + H+ RHSFATHLL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 112 LRKAGVQKNGSCHSFRHSFATHLLEDGYDIRTVQELLGHKDVRTTMIYTHV 162


>gi|17975106|ref|NP_536628.1| Int [Vibrio phage K139]
 gi|153820858|ref|ZP_01973525.1| Int [Vibrio cholerae B33]
 gi|165970235|ref|YP_001650866.1| putative integrase [Vibrio phage kappa]
 gi|229512070|ref|ZP_04401549.1| integrase [Vibrio cholerae B33]
 gi|229519206|ref|ZP_04408649.1| integrase [Vibrio cholerae RC9]
 gi|229607239|ref|YP_002877887.1| integrase [Vibrio cholerae MJ-1236]
 gi|254849315|ref|ZP_05238665.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|4530503|gb|AAD22068.1| Int [Vibrio phage K139]
 gi|126521650|gb|EAZ78873.1| Int [Vibrio cholerae B33]
 gi|165292212|dbj|BAF98794.1| putative integrase [Vibrio phage kappa]
 gi|229343895|gb|EEO08870.1| integrase [Vibrio cholerae RC9]
 gi|229352035|gb|EEO16976.1| integrase [Vibrio cholerae B33]
 gi|229369894|gb|ACQ60317.1| integrase [Vibrio cholerae MJ-1236]
 gi|254845020|gb|EET23434.1| conserved hypothetical protein [Vibrio cholerae MO10]
          Length = 345

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 59/295 (20%), Positives = 111/295 (37%), Gaps = 29/295 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-----LSYTEIRAFISKR----- 78
           R LS+L    ++            Y +  +TI+ +        +  +  AF + R     
Sbjct: 62  RRLSELLETWWQVHGHTIKSGKVVYRKTALTIKELGDPIASTFTSKQYLAFRASRVSHFN 121

Query: 79  -RTQKIGDRSLKRSLSGIKSFL-KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              + +        L+ +     + +K ++    + + ++  +K +      L++     
Sbjct: 122 KENKSLSPTYQNFQLNLLSGMFSRLIKYKQWNLPNPLDDIEPIKVNQRALAYLDKADIQP 181

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
            +  +    S            I  +    G RISEALSL    I + + T  ++ KG +
Sbjct: 182 FLQRLGGFESDGRSVSIPEIVLIAKICLATGARISEALSLERSQISEFKLTF-VETKGKR 240

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           IR VP+  ++ K I+               L      +      G   RYI++      +
Sbjct: 241 IRSVPISENLYKEIM---------------LASSSSTKIFSTTYGSAHRYIKKALPDY-V 284

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           P     H LRH+FATH + N GD+  +Q ILGH ++  T  Y + +  +    + 
Sbjct: 285 PEGQATHVLRHTFATHFMMNRGDILILQRILGHQKIEQTMAYAHFSPDHLIQAVQ 339


>gi|313898869|ref|ZP_07832402.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312956333|gb|EFR37968.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 368

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 103/277 (37%), Gaps = 33/277 (11%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           + I  +    I+ FI    T +     + +  + +     +  K+ +   + + ++ N K
Sbjct: 100 KRINLIRSKTIKDFIESYNTPEYKLSYVNKMRTYLNKLFSFAVKQNLIERNPVSSIPNFK 159

Query: 121 KSNSLPR---ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
           + + L          +    V              D     I   LY  G+R  E L+L 
Sbjct: 160 RPDELKEEMQFYTPDEWKRFVQAF--------PKDDIMYYTICCTLYYMGMRRGEVLALN 211

Query: 178 P-QNIMDDQSTLRIQGK-----------------GDKIRIVPLLPSVRKAILEYYDLCPF 219
              ++   + T+R+                     +  R++ +     + + +Y +    
Sbjct: 212 RKDDVDIVKGTIRVNKTVSQYVSGQRYVVTPPKTKNSYRVIKMPEEELQIMKKYLEWYDS 271

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
               +    LF     +P+ P +  +   ++    GLP     H LRHS AT L+++G +
Sbjct: 272 CPGASADGFLF--GMDQPIIPKLLNKRFHRVADAAGLPQ-IRIHDLRHSHATLLINHGAN 328

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +++I   LG+      + Y+++ ++   D M++I + 
Sbjct: 329 IKAIADRLGNTVEEVLKTYSHLFNE-TEDAMIQIINN 364


>gi|282601462|ref|ZP_05981764.2| putative phage integrase [Subdoligranulum variabile DSM 15176]
 gi|282568976|gb|EFB74511.1| putative phage integrase [Subdoligranulum variabile DSM 15176]
          Length = 385

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 55/306 (17%), Positives = 104/306 (33%), Gaps = 43/306 (14%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           E  + +     ++WL      +     TL  Y         F        I    + ++ 
Sbjct: 65  ESENTKFEAYAEHWLD--RAAKRYKASTLAGYRKMLELAYPF--------IGGLPLCKIR 114

Query: 68  YTEIRAFISKRRTQK------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
              +  F  + R +       + + ++ + L  + + L+   K  I   +    +   ++
Sbjct: 115 PMVLEGFAEELRKRPGRGGKPLSENTVHKYLDAVSAVLQDAAKNDILLYNPAHRVEKPQQ 174

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
              +P+   + +   L+  +L                   +    GLR  E  +L   ++
Sbjct: 175 --RIPQ---QWEMRKLLQCLLQEP--------LLYRVFYLMALSTGLRRGELCALRWCDL 221

Query: 182 MDD--------------QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
                            Q  L    K  + RIV +   V   + E +     + N     
Sbjct: 222 HGGNQVKIQHSRSTVVGQGVLESDTKNHRTRIVVMPQIVFDDLGELFTEQALENNGADWN 281

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
            L    +GKP++P  F R++R L    G P     HT+RH FAT+LL +G   +    +L
Sbjct: 282 GLIFQRKGKPIHPDSFSRHLRHLYDQNGFPEEYHLHTMRHFFATYLLEHGTSKQVAADLL 341

Query: 288 GHFRLS 293
           GH   +
Sbjct: 342 GHADTA 347


>gi|154498965|ref|ZP_02037343.1| hypothetical protein BACCAP_02957 [Bacteroides capillosus ATCC
           29799]
 gi|150271805|gb|EDM99031.1| hypothetical protein BACCAP_02957 [Bacteroides capillosus ATCC
           29799]
          Length = 397

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/321 (14%), Positives = 109/321 (33%), Gaps = 56/321 (17%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           L+  TL++Y           A   +  I    I  +     +  + +         ++++
Sbjct: 83  LAPNTLRNYR-------ERYAHNIQPVIGRMAISSVKPMHCKKVLLQM-DAIYAGSTIRQ 134

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           +   + +  K  K   +  +  +  +R  K      RA+++ + LT  +  L   + +  
Sbjct: 135 AYITMGTMFKAAKMNDVIAKHPMDGVRYTKPV----RAVDDIKFLTRQEQSLFLQAAKKS 190

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------------- 193
               + + IL      GLR  E + LT   +  ++ TL +                    
Sbjct: 191 HNYYQYALILE----TGLRTGELIGLTWDAVDLEKRTLTVNKTLEFRHGLHTWRAGPPKT 246

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI--------------------QLPLFRGI 233
               R +PL     + +   ++         +                    +  +F   
Sbjct: 247 QHSYRTIPLTDRACEILQSVWNSRDTRKESPLLSQTLEYIDRRTGSIAKLVMRDLVFINW 306

Query: 234 RG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           R  +P     +  ++ ++    G+      H LRH++AT  + +G   + +Q +LGH  +
Sbjct: 307 RTGEPAKNSSYDTHLYKICDEAGI-KRFCMHALRHTYATRAIESGIQPKVLQKLLGHASI 365

Query: 293 STTQ-IYTNVNSKNGGDWMME 312
            TT   Y +V + +    + +
Sbjct: 366 KTTMDWYVHVTTDSLDQAVRQ 386


>gi|89147492|gb|ABD62606.1| integrase [uncultured bacterium]
          Length = 163

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 34/93 (36%), Positives = 45/93 (48%)

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           A  E+     F        P         +     QR I+   R   +    + HTLRHS
Sbjct: 70  ACREWGWQYVFPSGNISSDPRTGRKSRYHIYSQSIQRAIKMALRKADIIKPASTHTLRHS 129

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           FATHLL NG D+R++Q +LG   +STT IYT+V
Sbjct: 130 FATHLLENGYDIRTVQELLGRKDVSTTMIYTHV 162


>gi|114564601|ref|YP_752115.1| phage integrase family protein [Shewanella frigidimarina NCIMB 400]
 gi|114564638|ref|YP_752152.1| phage integrase family protein [Shewanella frigidimarina NCIMB 400]
 gi|114335894|gb|ABI73276.1| phage integrase family protein [Shewanella frigidimarina NCIMB 400]
 gi|114335931|gb|ABI73313.1| phage integrase family protein [Shewanella frigidimarina NCIMB 400]
          Length = 377

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 61/337 (18%), Positives = 112/337 (33%), Gaps = 38/337 (11%)

Query: 14  LLKERQNWLQNLEIERGL--SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           L  E   +L    ++RG   S+ T  +Y     QFL F      +   I    +     +
Sbjct: 39  LCVEAMQFLIYECLKRGRVDSENTWWTYARHLNQFLTFCEHNGLDWRNISESSE-DEMLV 97

Query: 72  RAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL----- 125
            A+      +  +   S  + L  I  F  Y   +   +    L   +++K         
Sbjct: 98  SAYRDLCVGEFGMSVNSTNQHLRTIVRFYSYGVGKWFDSLPYSLESVSVRKGQQFLAHTE 157

Query: 126 ----PRALNEKQALTLVDNVLLHTSHETKWI-----DARNSAILYLLYGCGLRISEA--- 173
                +  ++    T        +++E + +     +     ++ L    G+R  E    
Sbjct: 158 RNGGKKYSSDLMMKTFEKKAEFLSAYEVQELLSSIENPTLKLMVRLCLQTGIRRKELLLF 217

Query: 174 ---LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI---QL 227
              +   P            + KG+K R + +   + + +  Y +   F           
Sbjct: 218 PLHVIRKPSGNQTYYEVNISRTKGEKERKIHIPSRLMEDLWRYVNEARFQKQQESGVNSD 277

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS--------NGGD 279
            LF    G+            +  + L LP     H LRHS+ATH+L             
Sbjct: 278 CLFLTSDGQEWASQG--SAFGKALKSLNLPFHVAPHMLRHSYATHMLKGLLERKSSKFEP 335

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           L  +QS LGH  ++TT  Y ++ + +  D +   Y Q
Sbjct: 336 LMYLQSRLGHSSITTTMKYLHLVN-DLVDDLSIEYQQ 371


>gi|329315330|gb|AEB89743.1| Transposase A from transposon Tn554 [Staphylococcus aureus subsp.
           aureus T0131]
          Length = 302

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 70/329 (21%), Positives = 124/329 (37%), Gaps = 50/329 (15%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           ++FELL +   WL+              S   D +           E+ T+ TI  +   
Sbjct: 11  INFELLADFVGWLRYPS----------ASNVIDLQS-----KKAIREETTVNTILNV-VM 54

Query: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129
               ++S+    K  D   +      K FL ++ K +        N+  L+      R L
Sbjct: 55  SFLDYLSRLGEFKSIDVFKQAKGRNFKGFLHHVNKGRYQK-----NVLKLRVKKKQIRTL 109

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
             K+   ++D               R+  IL L+Y  GLRI E LSL  ++I+   + + 
Sbjct: 110 RSKEVKQIIDAC----------HTKRDKLILMLMYEGGLRIGEVLSLRLEDIVTWDNQIH 159

Query: 190 IQG----------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKP 237
           +            K  K R + +   +     +Y      +   +  +   L  G  GKP
Sbjct: 160 LTPRDVNVNEAYIKLRKERTIHVSKELMSLYTDYLIYEYSEELEHDYVFISLKEGYFGKP 219

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-Q 296
           L        +R++ +  G+    T+H LRH+ AT L+  G D+  +Q  LGH  + TT  
Sbjct: 220 LKYQSVLDLVRRIVKRTGIEF--TSHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTTLN 277

Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
            Y +++ ++    M   +++       K 
Sbjct: 278 TYVHLSDQD----MKNEFNKYLERKEHKK 302


>gi|255692229|ref|ZP_05415904.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
 gi|260622093|gb|EEX44964.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
          Length = 404

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 56/303 (18%), Positives = 113/303 (37%), Gaps = 30/303 (9%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           +Q  +I  G+SK T  + +        F+ F          +R+L+   I  F     ++
Sbjct: 123 IQYKQIGCGVSKGTYANSKHGLSLLENFIQFKYHRD--DMFLRELNRDFIEEFRIWLLSE 180

Query: 82  -KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
             +      + L+ +K  +           S     +  ++  S P  LNE +   +++ 
Sbjct: 181 HGLSHNGAVKYLALLKKVVNRAVANNKIAFSPFAAYKLERQEVS-PDFLNEDELRRIINF 239

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQGKGDKIR- 198
                  E          +       GL   +  +L  ++   D++  + I+ K  K   
Sbjct: 240 NSPLPRLERT------RDMFLFACYTGLSYVDVKTLRAEHLERDNEGRIWIKKKRIKTGV 293

Query: 199 --IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
              +PLLPS +  I +Y          +  +P++        +      Y++ +     +
Sbjct: 294 LARIPLLPSAKMLIDKY-------SGGDTLIPIY--------SAKDINLYLKDIAILCHI 338

Query: 257 PLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
               T HT RH+FA+ + L+N   L ++  +LGH     T+ Y  +  K  G+ M ++ D
Sbjct: 339 DKRITYHTARHTFASTVTLANNISLIAVSKMLGHSNTRMTEHYARLVDKCIGEEMDKLMD 398

Query: 316 QTH 318
             +
Sbjct: 399 TFN 401


>gi|223369768|gb|ACM88754.1| integrase [uncultured bacterium]
          Length = 163

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 37/162 (22%)

Query: 177 TPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY--------------------- 214
             +++  D   + +  GKG K R   L   +  AI +                       
Sbjct: 1   RVKDLDFDNGCITVHDGKGGKSRNSLLPTGLIAAIKQLIDRVLVIQQEDNAQGVGPSLPF 60

Query: 215 --------------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLS 259
                          +  F  +     P    +    L+  V ++ ++   +  G+    
Sbjct: 61  ALDRKYPSAYRQPAWMFIFPSSTLCNHPYSGKLCRHHLHDSVARKALKAAVQKAGILNKR 120

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|21283668|ref|NP_646756.1| integrase [Staphylococcus aureus subsp. aureus MW2]
 gi|300912911|ref|ZP_07130349.1| integrase [Staphylococcus aureus subsp. aureus TCH70]
 gi|21205109|dbj|BAB95804.1| integrase [Staphylococcus aureus subsp. aureus MW2]
 gi|300885689|gb|EFK80896.1| integrase [Staphylococcus aureus subsp. aureus TCH70]
          Length = 345

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 111/278 (39%), Gaps = 18/278 (6%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           + T + Y    +          + KI    + +++    + FI+    +   + +++++ 
Sbjct: 74  ENTYRHYRNALQH-------IQKHKIGKMELSKINRQVYQKFINDYSKEHAKE-TIRKTN 125

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             I+S L          ++    + N K         +E++    V    +   H  K  
Sbjct: 126 GAIRSALDDALYDGFIFKNPAYKV-NYKAGKP---TKSEQEKFISVTEYEILKDHVRKKR 181

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
              + A+  ++   G R+S A ++  ++I   ++T+ I  +        +  S+ K+ ++
Sbjct: 182 TRSSLALF-IMICTGCRVSGARNIKTEHINQVKNTIFIDERKTDTSPRYI--SIAKSDMK 238

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +         ++    +F+      +N       ++   R   +P+  T+H LRH+  ++
Sbjct: 239 HIMDVISTFAISYDGYIFKEAGSI-INLQAINNALKSACRVNNIPI-ITSHALRHTHCSY 296

Query: 273 LLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDW 309
           LL+ G  +  I   LGH  ++ TT +Y+++  +   + 
Sbjct: 297 LLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEE 334


>gi|297208820|ref|ZP_06925236.1| integrase [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|296886545|gb|EFH25462.1| integrase [Staphylococcus aureus subsp. aureus ATCC 51811]
          Length = 276

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 111/278 (39%), Gaps = 18/278 (6%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           + T + Y    +          + KI    + +++    + FI+    +   + +++++ 
Sbjct: 5   ENTYRHYRNALQH-------IQKHKIGKMELSKINRQVYQKFINDYSKEHAKE-TIRKTN 56

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             I+S L       +  ++    + N K         +E++    V    +   H  K  
Sbjct: 57  GAIRSALDDALYDGLIFKNPAYKV-NYKAGKP---TKSEQEKFISVTEYEILKDHVRKKR 112

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
              + A+  ++   G R+S A ++  ++I   ++ + I  +        +  S+ K+ ++
Sbjct: 113 TRSSLALF-IMICTGCRVSGARNIKIEHINQVKNAIFIDERKTDTSPRYI--SIAKSDMK 169

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +         ++    +F+      +N       ++   R   +P+  T+H LRH+  ++
Sbjct: 170 HIMDVISTFAISYDGYIFKEAGSI-INLQAINNALKSACRVNNIPI-ITSHALRHTHCSY 227

Query: 273 LLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDW 309
           LL+ G  +  I   LGH  ++ TT +Y+++  +   + 
Sbjct: 228 LLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEE 265


>gi|255690096|ref|ZP_05413771.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|260624375|gb|EEX47246.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 308

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 108/269 (40%), Gaps = 28/269 (10%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSN 123
           +L   E++ F+ ++  Q++  +S+K  L  +K  +K+  K  I + +   +     +++ 
Sbjct: 47  ELLENEVQEFVLQKLQQRLRAKSVKDILIVLKMVMKFGAKLGILSYQDWCIKFPPPQENK 106

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            L   LN      ++  +  H +             +Y+    G+RI E  +LT  +I  
Sbjct: 107 QL-NVLNIANHKAILQYISNHFTFRNLG--------IYICLTTGIRIGEICALTWDDIDI 157

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAIL----------------EYYDLCPFDLNLNIQL 227
               + I+   ++I I+       + I+                E   +      +    
Sbjct: 158 INGVICIRKTIERIYILDGEKIHTEIIIGTPKTQNSIRDIPMNKELLKMLRPLKKIVNGK 217

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                   KP  P  ++ Y +++   L +P     H LRHSFAT  + +  D +++  IL
Sbjct: 218 FYVLTNEEKPTEPRTYRNYYKRMMEQLNIP-PLKFHGLRHSFATRCIESNCDYKTVSVIL 276

Query: 288 GHFRLSTT-QIYTNVNSKNGGDWMMEIYD 315
           GH  ++TT  +Y + N +     + +++ 
Sbjct: 277 GHSDITTTLNLYVHPNMEQKKRCIDKVFK 305


>gi|149915553|ref|ZP_01904079.1| Integrase [Roseobacter sp. AzwK-3b]
 gi|149810445|gb|EDM70288.1| Integrase [Roseobacter sp. AzwK-3b]
          Length = 188

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 83/192 (43%), Gaps = 17/192 (8%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + LNE Q   ++          ++    R+  I+   +  GLR  E  +L   ++ D+  
Sbjct: 5   QTLNEAQLRRVIQYC------RSRRHPTRDETIVLFSFYAGLRAKEIAALKRGDVFDEAG 58

Query: 187 TLR-------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
            +R       +Q KG K R V +   +R+A+ EY          +   PLF   +G   +
Sbjct: 59  AVREQFILSAVQSKGGKTRTVYVNQRLRRALAEYAADLNLH---DPNRPLFESQKGGHFS 115

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                +    + R +GL    ++H+ R ++ T L + G  +R +  + GH  +STTQ Y 
Sbjct: 116 ANTMCQLFLDIYRAVGL-KDASSHSGRRTYITRLANKGVGVRLLAELAGHSHISTTQRYI 174

Query: 300 NVNSKNGGDWMM 311
           +VN++     + 
Sbjct: 175 DVNAEQLSAAVE 186


>gi|163943470|ref|YP_001642699.1| integrase family protein [Bacillus weihenstephanensis KBAB4]
 gi|163865667|gb|ABY46724.1| integrase family protein [Bacillus weihenstephanensis KBAB4]
          Length = 386

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 61/301 (20%), Positives = 112/301 (37%), Gaps = 37/301 (12%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-------EKITIQTIRQLSYTEIRAF-- 74
           + + E+ +   +   Y  D  QF  F+   TE       +    Q  R L    IR +  
Sbjct: 72  HFDQEKRIKDESRTLYARDLSQFYFFIKQSTEFLQQDVKDYKVGQVWRNLRKRHIRNYQK 131

Query: 75  ------ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM--RNLKKSNSLP 126
                 IS +  +K    ++ R L  I+S+LK+L + +   E   + +    + K +   
Sbjct: 132 WLSQDAISYQSKEKYKASTISRKLGVIRSYLKWLYEIQYIQEPLHVEILSTAVNKQHKPK 191

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-- 184
           R L+ ++   L+              +  N A+L +L   GLR++E      +++  D  
Sbjct: 192 RELSYEEVKQLLHYYK---------DNEINYALLSVLATTGLRVAEVAHAKWEDLEYDAI 242

Query: 185 --QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF--DLNLNIQLPLFRGIRGKPLNP 240
             +  L +  KGD  RIV +   +   I+ +        D+       +F+         
Sbjct: 243 RGRYYLIVDTKGDNERIVSINKEIFNRIVAFRIRRRLPVDIGNKNGKTIFQTKNHTAYRE 302

Query: 241 GVFQRYIRQLRRYLGLPL----STTAHTLRHSFATHLLS-NGGDLRSIQSILGHFRLSTT 295
               +YI ++ +   L        T H  RH +  +L    G     I + +GH    TT
Sbjct: 303 NYLSQYISKIIKDTKLSFTENIRITPHFFRHFYVQYLYDYKGLAPHVIAAAVGHKNDRTT 362

Query: 296 Q 296
           +
Sbjct: 363 K 363


>gi|77406880|ref|ZP_00783906.1| integrase/recombinase, phage integrase family [Streptococcus
           agalactiae H36B]
 gi|77174512|gb|EAO77355.1| integrase/recombinase, phage integrase family [Streptococcus
           agalactiae H36B]
          Length = 390

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 49/302 (16%), Positives = 102/302 (33%), Gaps = 29/302 (9%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR-- 90
           K T++ Y          L  +         + +L+   I++ I+K   +           
Sbjct: 84  KHTVK-YNTQLAT-EKLLTVHVIPIFGAYKLDKLTTPLIQSIINKLADKTNKGERKAYLH 141

Query: 91  --SLSGI-KSFLKYLKKRKITTESNILNMRNLKKSNS----LPRALNEKQALTLVDNVLL 143
              +  + K  L+Y    +    +    +   + +        +     +  T  +   L
Sbjct: 142 YDRIHALNKRILQYGVIMQAIPFNPAREVILPRNTKKANTKRVKHFENDELRTFFNY--L 199

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK---------- 193
           +   ++K+       +   L   G RI+EAL+L   +I  D + + +             
Sbjct: 200 NNLDKSKYRYFYEVTLYKFLLATGCRINEALALNWSDIDLDNAVVHVTKTLNYKQEINSP 259

Query: 194 --GDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQ 249
                 R + +       I +Y      +       +  +F     K  N    Q  +R 
Sbjct: 260 KSKSSYRDIDIDSQTVTMIKQYRRRQIQEAWKLGRSETVVFSDFIHKYPNNRTLQTRLRT 319

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGD 308
             +   +  +   H  RH+ A+ LL+ G   + +Q  LGH  LS T  IY++++ +N   
Sbjct: 320 HFKRANVS-NIGFHGFRHTHASLLLNTGIPYKELQYRLGHSTLSMTMDIYSHLSKENAKK 378

Query: 309 WM 310
            +
Sbjct: 379 AV 380


>gi|332829973|gb|EGK02601.1| hypothetical protein HMPREF9455_00851 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 413

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 61/314 (19%), Positives = 121/314 (38%), Gaps = 28/314 (8%)

Query: 10  VSFELLKERQNWLQNLE---IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           +S +LL+  +  L+ L    IE   S  T +           FL     E I  + I + 
Sbjct: 100 ISTKLLEAGKVELERLRLRSIEIN-STSTHRDSRLMQNNLQEFLCSRGMEDIAFEAITEE 158

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
                + ++     +K  +  + R L+ +   +     +++   + + ++R  KK     
Sbjct: 159 FGESFKLYLKTEHNRK--NSYINRGLTWLNRLIYIAIDQEVLRSNPLEDVRYEKKDPPKH 216

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQ 185
           R + +     +++     T      ++    A ++     GL   +   L P +I    +
Sbjct: 217 RHIGKIDLKAMME-----TPMPDARLELIRRAFIFSSL-TGLAYVDMHRLYPHHIGKTAE 270

Query: 186 STLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
             L I+    K D    +PL P   + ++ Y          +   P+F      P+    
Sbjct: 271 GRLYIRKRRVKTDVEAFIPLHPIAEQILMLYNT-------TDDSQPVFP----LPI-RDK 318

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               I Q+ + + L  + + H  RHSF T  +S G  + SI  ++GH  +STTQ+Y  + 
Sbjct: 319 IWYEINQIGKLIDLKENLSYHQSRHSFGTLAISAGLPIESIAKMMGHANISTTQVYAQIT 378

Query: 303 SKNGGDWMMEIYDQ 316
            +   D M ++  +
Sbjct: 379 EQKISDDMDKLIKR 392


>gi|332654094|ref|ZP_08419838.1| putative prophage LambdaCh01, site-specific recombinase, phage
           integrase family [Ruminococcaceae bacterium D16]
 gi|332517180|gb|EGJ46785.1| putative prophage LambdaCh01, site-specific recombinase, phage
           integrase family [Ruminococcaceae bacterium D16]
          Length = 377

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 58/327 (17%), Positives = 119/327 (36%), Gaps = 47/327 (14%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +  + W+ ++ +    ++ T+ +Y+         +  + +  +    + +LS  +++ 
Sbjct: 70  LSQWLEYWMDSI-VRPNRAETTVYAYQ-------KIIDNHIDPALGDTPLTKLSAKQVQE 121

Query: 74  FISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK---KSNSLPRAL 129
           + +  +R   +   +++R    + S L+   ++++   S +  +   +   K  S    L
Sbjct: 122 YYTTTQREANLSSNTMRRHHDLLSSALRSAVRQEMIPVSPMNRVEPPRPRPKETSFYDNL 181

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
             KQ   L+    L                + L    G+R  E   L   N+   +  + 
Sbjct: 182 ELKQLYQLIQGKPLELP-------------VKLAGSLGMRREEICGLKWDNVDLQRRLVI 228

Query: 190 IQ---------------GKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPL 229
           I+                    +R + L   +   + +         C    N N +  +
Sbjct: 229 IREARTAYGANIVQKETKNRASVRTLYLADELCLLLEQEQSRQEALRCQDPDNFNPEGYV 288

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
               + +P +P        +  R   LP   T H LRH+FAT     G  L  I   LGH
Sbjct: 289 VLDHKQRPYSPNALSLAFTRFVRRNNLPR-LTFHGLRHTFATIASCQGASLFDIGKALGH 347

Query: 290 FRLSTT-QIYTNVNSKNGGDWMMEIYD 315
              STT +IYT++  +   D M+ + D
Sbjct: 348 STPSTTGRIYTHLVDRTHEDLMLRVSD 374


>gi|294793950|ref|ZP_06759087.1| DNA integration/recombination/inversion protein [Veillonella sp.
           3_1_44]
 gi|294455520|gb|EFG23892.1| DNA integration/recombination/inversion protein [Veillonella sp.
           3_1_44]
          Length = 308

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 57/289 (19%), Positives = 113/289 (39%), Gaps = 35/289 (12%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T++ YE       ++L     E + +  + ++SY ++    ++   ++       +  + 
Sbjct: 31  TMRKYEITL----LWLKKLVPE-LKLSQLNRISYQQLLNDYAEFHERQTTMDFHHQIKAA 85

Query: 95  IKSFLKYLKKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           I                         R+ +      + LN+ +  TL+ N+ L +     
Sbjct: 86  ILD----AVDEGFIDRDPTRKAIIKGRSPRIKK--IKYLNQFELHTLLVNLKLTSEINWD 139

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----S 205
           W       ++ ++   G+R SEAL+LTP++      +L +    D       LP     S
Sbjct: 140 W-------LILIIAKTGMRFSEALALTPKDFDFSHQSLIVDKTWDYKGNGGFLPTKNRSS 192

Query: 206 VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           VRK  L++  +  F      L    P+F       +        + +  + LG+P+  + 
Sbjct: 193 VRKIQLDWQTIIKFSELIKGLPEDKPIFV---KGRVFNSTINGVLERYCKKLGIPV-ISI 248

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWM 310
           H LRH+ A+ LL  G  + S+   LGH  ++TTQ  Y ++  +     +
Sbjct: 249 HGLRHTHASLLLFAGVSIASVARRLGHASMTTTQKTYIHIIQEMENRDI 297


>gi|157324990|ref|YP_001468416.1| Int [Listeria phage A500]
 gi|66732998|gb|AAY52817.1| Int [Listeria phage A500]
          Length = 400

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 95/254 (37%), Gaps = 30/254 (11%)

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           +++ + +  RS++     I S  +   + K+   +    +R  K +   P      +   
Sbjct: 148 EKKNKPLSPRSIRNIYFAINSVFETAVEWKVIPNNPAEVVRLPKTTKRPPTIYTPAEIE- 206

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----- 191
           L++  LL               ++Y+    G R +E  +L  +++   +  L  +     
Sbjct: 207 LLNAALLKEPLRL-------QVMIYIALISGCREAELAALEVKHVNLIEDELTFEQTLVA 259

Query: 192 -----------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGK 236
                       K D   IV +   +   I  Y      D+    +      LF  + GK
Sbjct: 260 KAGEGLLLKESTKNDLAGIVSIPGWLTTLIETYISNEVLDIQTEGKWANYKFLFADMEGK 319

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH-FRLSTT 295
           P+ P    +  R+      LPL    H LRH+ AT LL+ G D++ IQ  L H   ++T+
Sbjct: 320 PIRPDSIYQRWRRFLERHNLPL-IRFHDLRHTSATLLLNKGRDIKIIQERLRHKSSVTTS 378

Query: 296 QIYTNVNSKNGGDW 309
            IY +V      D 
Sbjct: 379 NIYAHVLKDTHKDA 392


>gi|301311429|ref|ZP_07217356.1| integrase [Bacteroides sp. 20_3]
 gi|300830515|gb|EFK61158.1| integrase [Bacteroides sp. 20_3]
          Length = 401

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 103/274 (37%), Gaps = 18/274 (6%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           ++   F        + +    + +  ++  F   +    +   S  + L  I+  + +  
Sbjct: 142 QRLGEFCKKSRINDMPLDQFNRQTIHDLEIFF--KADYNLSVNSTAKMLEFIRKGILWAY 199

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           +  +   +     R +KK ++  + LN+++   +    L     +   +D    + ++  
Sbjct: 200 QCGLILINPFSAYR-IKKEDTQVQFLNKQEISRIRKKQL-----DIPRLDLVRDSFVFSC 253

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223
           +  G+  ++   LT   I+ D  +    G     R     P+    + +  ++    +N 
Sbjct: 254 F-TGISYADMCKLTKDQIVFDSKS---SGYIHFYRTKTNHPAFIPLLPQSMEILDKYINQ 309

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF-ATHLLSNGGDLRS 282
           N    +F       L+      Y+++L    G+    T H  RHSF  T  L NG  + +
Sbjct: 310 NNSGKIFP-----MLSNQKTNAYLKELADICGIKKKLTYHVARHSFAVTICLENGIPIET 364

Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +  ILGH  L  TQ Y  +  K   + M  + D+
Sbjct: 365 LSKILGHTNLRVTQAYAKITHKKVMNDMQALKDR 398


>gi|215407994|emb|CAS02324.1| integron integrase [uncultured bacterium]
          Length = 158

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 47/91 (51%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A   +     F  + +   P    +R   +    FQR  ++     G+    T HTLRH
Sbjct: 65  RAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRH 124

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
           SFAT LL +G D+R++Q +LGH  +STT IY
Sbjct: 125 SFATALLRSGYDIRTVQDLLGHSDVSTTMIY 155


>gi|89893554|ref|YP_517041.1| hypothetical protein DSY0808 [Desulfitobacterium hafniense Y51]
 gi|89333002|dbj|BAE82597.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 308

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 50/300 (16%), Positives = 97/300 (32%), Gaps = 50/300 (16%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQK---------IGDRSLKRSLSGIKSFLKYLKKRKI 107
           ++    +  L    +  F                 + DRS++   + + S L+   K ++
Sbjct: 9   QLGNLKLSDLRPGHLMKFYKYLEQDGIRQDGKPGKLSDRSIRYYHAVLSSMLEDAMKWQL 68

Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
            T +    +   K       + +E Q+  L+  +             +   +  L    G
Sbjct: 69  ITSNPAARVEAPKVRRKQTTSYDETQSAELLQALYSEP--------IKYRVLTTLALYTG 120

Query: 168 LRISEALSLTPQNIMDDQSTL----------------RIQGKGDKIRIVPLLPSVRKAIL 211
           LR  E L L  + I  + + +                R        R++ +  S+   + 
Sbjct: 121 LRRGELLGLEWKVIDMENAQIAVVKQSQYTPETGVVDRKTKTEGSQRLISIPTSIVTLLK 180

Query: 212 EYYDLCPFDLN-----LNIQLPLFRGIRGKPLNPGVFQRYIRQLRR----------YLGL 256
           EY      +             LF    GKP++P     +                   L
Sbjct: 181 EYKAAQNEERLKVGSLWQPSDKLFTTWNGKPMHPDTVSSWFNDFLTRYNEKTIQQGKASL 240

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYD 315
           P     H LRH+ A+ L++ G  L+++ S LGH  ++ T  IY +       +   ++ D
Sbjct: 241 P-HIRFHDLRHTSASLLIAQGVPLKNVSSRLGHSSIAITADIYASALQSADKEAAQKLED 299


>gi|254881857|ref|ZP_05254567.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|254834650|gb|EET14959.1| integrase [Bacteroides sp. 4_3_47FAA]
          Length = 372

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 57/275 (20%), Positives = 105/275 (38%), Gaps = 39/275 (14%)

Query: 62  TIRQLSYTEIRAFISKRRT--------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI 113
           T  ++     R F+             QK+   S     S  ++ L    + K   E+  
Sbjct: 127 TFEEVDVDLCRKFMEYLLNAPQSIHTNQKLHINSAAGYWSAFRAVLHTAYRDKKIKENPN 186

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
             +  ++   ++   L++++ + L +             D    A L+     GLR S+ 
Sbjct: 187 GFLDRIECIPTMREHLSQEELIRLAETPCEE--------DVLKRAFLFACL-TGLRKSDI 237

Query: 174 LSLTPQNIMDD-QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
             LT Q I       + +  +  K + +   P   +A           L    +  +F G
Sbjct: 238 RQLTWQQIQPYTNGKMFVTTRMQKTKQIVHNPISDEA--------YGLLGERHEGLIFEG 289

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
            + K L     Q  +++     G+    T H  RHSF +  +  G D+  IQ+ +GH  +
Sbjct: 290 FKDKML-----QGPLKRWLLAAGITKKITFHCTRHSFGSLHVEMGTDMAVIQAYMGHKNI 344

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
           +TTQIY+ + ++     M E+ D+    IT K K+
Sbjct: 345 TTTQIYSKMAAQQ----MCEVVDK----ITLKRKE 371


>gi|167761671|ref|ZP_02433798.1| hypothetical protein BACSTE_00005 [Bacteroides stercoris ATCC
           43183]
 gi|167700458|gb|EDS17037.1| hypothetical protein BACSTE_00005 [Bacteroides stercoris ATCC
           43183]
          Length = 352

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 96/257 (37%), Gaps = 14/257 (5%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKK 121
              L++  + +F    + +     ++ + +  +K  +     ++    +        +K 
Sbjct: 95  FSDLTFEFVSSFEYFLQQKGYHTNTIAKHMKHLKRHINIAINKEYIEIQKYAFRKYKIKT 154

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
             +    L  ++   L     L  + +   +     A L+  Y  G+R S+  +L+ +NI
Sbjct: 155 VENKHTHLVPEELEQL---ERLSLTDKHMKLQKSLDAFLFCCYA-GMRYSDFTNLSKKNI 210

Query: 182 -MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
              +Q T  I         V L   +  A      L  +  NL     L           
Sbjct: 211 VDINQETWLIYKSVKTGTEVRLPLYLLFAGKGIVILNKYRNNLEDFFRLRDN-------- 262

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               + +  + +  GL    + HT RH+ AT L+ NG ++ ++Q +LGH  + TTQ+YTN
Sbjct: 263 SNINKDLIIIAKLAGLSKKISFHTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTN 322

Query: 301 VNSKNGGDWMMEIYDQT 317
           +        + +I    
Sbjct: 323 IMDMTIVHDLEKIKQAA 339


>gi|89147340|gb|ABD62532.1| integrase [uncultured bacterium]
          Length = 163

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 37/113 (32%), Positives = 51/113 (45%)

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R  G+G       L     +A   +     F        P     R   L      R ++
Sbjct: 50  RATGRGGVYLPHALERKYPRAGESWAWFWVFPSAKLSVDPQTGVERRHHLFEERLNRQLK 109

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +     G+    + HTLRHSFATHLL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 110 KAVVQAGIAKHVSVHTLRHSFATHLLQAGTDIRTVQELLGHSDVSTTMIYTHV 162


>gi|314947728|ref|ZP_07851135.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0082]
 gi|313645708|gb|EFS10288.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0082]
          Length = 393

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 79/232 (34%), Gaps = 33/232 (14%)

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSN--SLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
             L+Y    +    + +      +K       +  ++++   L+D           + + 
Sbjct: 153 QILRYGVAMQYIDNNPMEKTLLPRKKEYEKNRKFYSKEELNNLLDAF-------KDFGNM 205

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------------GDKIR 198
           +  A   LL   G+R SE L+L  ++I      L +                       R
Sbjct: 206 KQYAFFRLLAYTGMRKSEVLALQWKDIDTFNKELHVNKTLAVDEFGKVIIQSPKTRASRR 265

Query: 199 IVPLLPSVRKAILEYYDLCPFDL------NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           ++ L       +  +      +         + +  +F  ++     P     ++R + +
Sbjct: 266 VISLDTETLSILNNWKLQQKEEYLKLGYNTSSKEQHVFTTVKNTLYIPNTVNDWLRYILK 325

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
              LP   T H  RH+ A+ LL  G  ++ +Q  LGH     T  IY ++ +
Sbjct: 326 KYNLPR-ITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLDIYAHITN 376


>gi|326789921|ref|YP_004307742.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326540685|gb|ADZ82544.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 320

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 61/300 (20%), Positives = 126/300 (42%), Gaps = 36/300 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q +L+N + ++  S+ T++ Y  D R FL +   +  E +++   ++  + E + F+++ 
Sbjct: 23  QQYLRNCKADK-KSEGTIREYGYDLRFFLCWNLLFN-ENMSVLDFKKRHFEEFKYFMAEE 80

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE----SNILNMRNLKKSNSLPRALNEKQA 134
           R  K+ +  +   L  I++ + Y +      E    +    ++ L+K    P A   ++ 
Sbjct: 81  R--KVSNARINHLLCAIRTMMGYAEDDDDEYEEYFRNPASRIKGLEKEPVRPVAFLSQEQ 138

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
           + L+ N LL           ++  +L +LY  G R++E L +T       +  L+++ KG
Sbjct: 139 IDLLRNYLLE------HKMYQHLCLLDILYDSGARVNEVLQVTDSET-TSKGYLKVKCKG 191

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            +   + L    +K+I          L+   +   ++   G        + ++  L + L
Sbjct: 192 GRYEYILLHERSKKSIQ-------LHLSTKKEGAFWQSKYGPVETTSTLRGWVGDLYKIL 244

Query: 255 -GLPLST---TAHTLRHSFATHLLSNGG----------DLRSIQSILGHFRLSTTQIYTN 300
            GL  ST   T H+ RHS   +L +              +  IQ I+ H  +  T+ Y  
Sbjct: 245 KGLDPSTPYFTPHSFRHSVIENLGNGTHYLCKKLGRAFTIEEIQIIVHHKSVDMTKSYMK 304


>gi|291618731|ref|YP_003521473.1| Int [Pantoea ananatis LMG 20103]
 gi|291153761|gb|ADD78345.1| Int [Pantoea ananatis LMG 20103]
          Length = 348

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 87/239 (36%), Gaps = 30/239 (12%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILNMRNLKKSNSLPRALNEK 132
           ++ KR      + +L    + + S    L +    +  + +  +R L  +      L+ +
Sbjct: 119 YLDKRFPYAASNTTLNMDQAHMNSMFSELVRLGEWSAPNPLEKLRKLTTTEREMAWLDSE 178

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q  +L+                    I+ +    G R SEA +L    +  ++ T     
Sbjct: 179 QISSLLLVTESEPDLNR---------IVRVCLSTGARWSEAQNLRKSQLSPNKITFT-NT 228

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           K  + R VP+     K           +L+   Q  LF       L      R I+    
Sbjct: 229 KSKRNRTVPITKDFYK-----------ELSSIKQENLFGDCHYNFL------RAIKNAGI 271

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              LP     H LRHSF+ H + NGG++  +Q ILGH  +S T  Y +   ++    + 
Sbjct: 272 E--LPKGQMTHVLRHSFSAHFMMNGGNILVLQKILGHHDISMTMRYAHFAPEHLETAIK 328


>gi|289645001|ref|ZP_06477038.1| integrase family protein [Frankia symbiont of Datisca glomerata]
 gi|289505195|gb|EFD26257.1| integrase family protein [Frankia symbiont of Datisca glomerata]
          Length = 446

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 87/242 (35%), Gaps = 32/242 (13%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           + D +++ +   ++  L+      + T++   N+R   +           +A   ++   
Sbjct: 198 LADGTIRYAHRVLRVALQDAFLEGLVTQNVAKNLRLNHRYRPHFTPWTSGEAREFLEA-- 255

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----------- 191
                       R  A+  L    GLR  E L L   +I  D+  LR++           
Sbjct: 256 --------ARGGRLYALYVLALMLGLRKGELLGLRWSDIDLDRGVLRVRTSLQRVNGQLR 307

Query: 192 ----GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGV 242
                     R+V +  S  + +  + +    + +   +       +F   RG PL P  
Sbjct: 308 LGPVKTDSSARVVAMSASCVRVLRGHKERQDTERDAAGRTWTDHDLVFASARGTPLEPRN 367

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
             R    L R  GL      H LRH+ AT L   G  + +IQ++LGH   + T  IY  V
Sbjct: 368 VTRQFDALCRRAGL-RRIRFHDLRHTCATLLYEQGVTIDNIQNVLGHSSPTITKMIYVEV 426

Query: 302 NS 303
             
Sbjct: 427 TE 428


>gi|319641682|ref|ZP_07996365.1| phage integrase family Site-specific recombinase [Bacteroides sp.
           3_1_40A]
 gi|317386656|gb|EFV67552.1| phage integrase family Site-specific recombinase [Bacteroides sp.
           3_1_40A]
          Length = 401

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 53/302 (17%), Positives = 111/302 (36%), Gaps = 49/302 (16%)

Query: 19  QNWLQNLE--IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           +++L   +  + R  +K    +Y+          + +   K T + +  +   + + ++ 
Sbjct: 93  EDFLAYFKNIVNRNFAKC-DAAYKH--------FSRFCHNKCTFEMLDTVFCNKYKEYLL 143

Query: 77  K---------RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
                        + I   +     +  K  L    + +   ++    + N+  +  + +
Sbjct: 144 DTKVSARGKVMVNKPISRNTASAYWNIFKQVLTKAYRERRLVDNIASLLDNIPCTIPVKQ 203

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----MD 183
           +L+ ++   L ++       E      R +AI   L   GLRIS+ L+L  +NI      
Sbjct: 204 SLSLEEVRKLYNS-------ECSVPVVRKAAIFSCL--SGLRISDILNLKWENIQTYADG 254

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
                    K  +   VP+     + I                  +F G      N  + 
Sbjct: 255 GHYLDFKCVKTQRQTQVPIGDDAYELIQ----------PQTTDKYIFSG-----FNRTMT 299

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT-NVN 302
            R ++   +  G+    T H  RH++A+  L  G D+ ++Q +L H  +STTQIY  + +
Sbjct: 300 YRVMQDWIKECGINKHITFHCFRHTYASLQLELGTDIYTVQHLLNHKNVSTTQIYASHAD 359

Query: 303 SK 304
            K
Sbjct: 360 PK 361


>gi|307248803|ref|ZP_07530816.1| Integrase [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|307262551|ref|ZP_07544190.1| Integrase [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|306854730|gb|EFM86920.1| Integrase [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|306867749|gb|EFM99586.1| Integrase [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
          Length = 296

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 112/307 (36%), Gaps = 30/307 (9%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +N+L      R L   T +SY+   RQ              I+   Q++   + A+ ++
Sbjct: 5   YKNFLH-----RYLRADTKKSYDKAIRQVCKQCE--------IEFPSQVTSDVLLAWRNR 51

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT--ESNILNMRNLKKSNSLPRALNEKQAL 135
               KI   +    L  +K   K+  +  +    E+    +  L+   +  + L + Q +
Sbjct: 52  VVGTKIKPVTWNSYLRHLKCIYKFGIEHNLLNYQENPCNKL-FLRMGKAKRKVLTKSQMM 110

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L D  L                I+       +R ++ L L   ++   +  + I  + +
Sbjct: 111 KL-DFFLQGRLPAVLSPQWFIQTIINTFRFTAIRRAQLLRLKVDDVDLSRKVIHISPEIN 169

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--------LPLFRGIRGKPL--NPGVFQR 245
           K      +P   K +L Y ++   +L  + Q        + LFR  R K L         
Sbjct: 170 KNHEYHCIPISEK-LLPYLEMLIAELRKHHQCTNSQLFNINLFRKTRYKWLITTEYQISH 228

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
             R + +   +    + H  RH+ AT+L+ N  +L   + +LGH  +  T  Y   + + 
Sbjct: 229 LFRVISK--NIGFQVSPHRFRHTVATNLMRNPDNLYVAKQLLGHKDVRVTLTYIENDVEM 286

Query: 306 GGDWMME 312
             + + +
Sbjct: 287 IREKVNK 293


>gi|282917353|ref|ZP_06325108.1| phage integrase [Staphylococcus aureus subsp. aureus D139]
 gi|282318980|gb|EFB49335.1| phage integrase [Staphylococcus aureus subsp. aureus D139]
          Length = 345

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 111/278 (39%), Gaps = 18/278 (6%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           + T + Y    +          + KI    + +++    + FI+    +   + +++++ 
Sbjct: 74  ENTYRHYRNALQH-------IQKHKIGKMELSKINRQVYQKFINDYSKEHAKE-TIRKTN 125

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             I+S L       +  ++    + N K         +E++    V    +   H  K  
Sbjct: 126 GAIRSALDDALYDGLIFKNPAYKV-NYKAGKP---TKSEQEKFISVTEYEILKDHVRKKR 181

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
                A+  ++   G R+S A ++  ++I   ++T+ I  +        +  S+ K+ ++
Sbjct: 182 TRSLLALF-IMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYI--SIAKSDMK 238

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +         ++    +F+      +N       ++   R   +P+  T+H LRH+  ++
Sbjct: 239 HIMDVISTFAISYDGYIFKEAGSI-INLHAINNALKSACRVNNIPI-ITSHALRHTHCSY 296

Query: 273 LLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDW 309
           LL+ G  +  I   LGH  ++ TT +Y+++  +   + 
Sbjct: 297 LLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEE 334


>gi|295099168|emb|CBK88257.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87]
          Length = 403

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 60/352 (17%), Positives = 113/352 (32%), Gaps = 71/352 (20%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + WL  L     +S  TL+ Y          +  Y  + +    +  ++  +IR  +   
Sbjct: 72  EKWL--LMQSAKVSSGTLRGYTQT-------MNNYIVKPLGDMYLEDVTADDIRLAMIPL 122

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQALT 136
            ++  G  S    L  +K      ++ ++   +    +     K    +  AL ++Q   
Sbjct: 123 ASKSAGLYSKVNML--LKCVFYSAERSQLLEYNPCEGLSAKGGKPGKKI-NALTDEQVKL 179

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194
           L+D V                  + +    GLR  E L L    +  D  T  + ++   
Sbjct: 180 LLDTVRGLPP----------YTFIMIALYSGLRREEILGLQWDCVFLDVPTPYISVRRAW 229

Query: 195 DKIRIVPLLPSVRKA--------ILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQR 245
                 P++ +  K         I +    C  ++    +       R   PL+   FQR
Sbjct: 230 RSEHNRPVISTTLKTKAARRDIPIPKCLTDCLREVKEKTESEYVVADRNGNPLSSSQFQR 289

Query: 246 YIRQ----------LRRYLG-------------------------LPLSTTAHTLRHSFA 270
             +             +Y+                          +    T H LRH++ 
Sbjct: 290 VWKYVTVRSTKPHNYYKYVNGQCVKCTVTPTPGSHQKNNPKLVYAIDFDVTPHQLRHTYI 349

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQTHPSI 321
           T+LL  G D +++Q + GH    TT  IY  V      + +  +     PS+
Sbjct: 350 TNLLYAGIDPKTVQYLAGHENSKTTMDIYAQVKYNKPEELLSVVNAAFAPSV 401


>gi|121591862|ref|ZP_01679033.1| site-specific recombinase IntI4 [Vibrio cholerae 2740-80]
 gi|121546269|gb|EAX56565.1| site-specific recombinase IntI4 [Vibrio cholerae 2740-80]
          Length = 79

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 32/73 (43%), Positives = 46/73 (63%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           +N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q  LGH  + TTQI
Sbjct: 1   MNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQI 60

Query: 298 YTNVNSKNGGDWM 310
           YT+V  +     +
Sbjct: 61  YTHVLDRGASGVL 73


>gi|186472282|ref|YP_001859624.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184194614|gb|ACC72578.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 437

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 95/288 (32%), Gaps = 35/288 (12%)

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--- 117
           + + +++   ++ +I KR         + R L  I     Y  + +I   +    +R   
Sbjct: 157 RRLDEVTRPAMKKWIEKRLADGCKATGINRVLGSIGGLFSYAVEHEIIAANPCAKLRCKI 216

Query: 118 ------------NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI------ 159
                         ++   L   L+E++     +    H S +   I     +       
Sbjct: 217 DPEEDSEHGRELTAEEEQRLRVVLDERETRIREEAAARHDSRKVATIPGEFHSFVDHVKP 276

Query: 160 -LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
            + L    G+R SE L      I     T+RI+    K++   ++P   +A+        
Sbjct: 277 AILLALNTGMRRSELLRARWTAIDWKAQTIRIEAWTSKVKRTRVIPMNVEALSILKAWR- 335

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
                     +F    G+ L      R   +++R   +         RH  AT +++ G 
Sbjct: 336 ---RQTRFEFIFTNEIGECLREV---RDWNKIKREAQI-RDFRFMDTRHHTATRMINEGA 388

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGD--WMMEIYDQT---HPSI 321
               +Q +LGH     TQ Y         +   ++++  Q    HP  
Sbjct: 389 SPYHVQKLLGHKDGRMTQRYMRARDVKLAEAVALLDVPRQADADHPVA 436


>gi|94442268|dbj|BAE93633.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 51/112 (45%)

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + G G+      L      A   +     F  N     P    ++   +     Q+ I++
Sbjct: 50  VDGYGETTLPYALARKYPSAAKSWMWQYAFPSNQRCFAPDLGTMKRHHVRQTSVQKAIKR 109

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                 +     +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 110 AVTRCNINKRVGSHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|303239571|ref|ZP_07326097.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302592949|gb|EFL62671.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 417

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 51/338 (15%), Positives = 113/338 (33%), Gaps = 66/338 (19%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK---- 82
            E+ L    L  Y+       I L       +    + ++    +  F +          
Sbjct: 84  AEKQLEPKKLHCYK-------IMLNNRIIPTLGHLKLDRIQPNHLIEFYNNLAEPGIRQD 136

Query: 83  -----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                + + ++++    I S L+   + ++   +    ++  K         +E++   L
Sbjct: 137 GKGDTLSEPTIQKYHRIISSILQDAMQWQLIISNPASRVKPPKVRKKEAGTFDEEKTALL 196

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------ 191
           ++ +             +   ++ L    GLR  E ++L  +N+      + ++      
Sbjct: 197 LETLESEQ--------LKYKVLVLLGTVTGLRRGELVALKWENVDLKNCIIDVRYSAQYV 248

Query: 192 ----------GKGDKIRIVPLLPSVRKAILEYYDLCPFDL-----NLNIQLPLFRGIRGK 236
                          +R + +  SV+  +  Y      +             +F  + G+
Sbjct: 249 PGKGVSIKEPKTKSSLRKIAIPSSVKDLLKSYKQFQSQERLESGDQWKGDDWVFTQLNGE 308

Query: 237 PLNPGV----FQRYIRQLRRYL----GLPLS---------TTAHTLRHSFATHLLSNGGD 279
            ++P      F++++      +     +P +            H LRH+ AT L+  G +
Sbjct: 309 IMHPDTPTKWFKKFLEDYNEKVHSDKNIPKNQKEKYLLPVIKFHCLRHTAATLLIHKGLN 368

Query: 280 LRSIQSILGHFRLSTTQ-IYTNV---NSKNGGDWMMEI 313
           +R++ S LGH   STT  IY +      K   D M  I
Sbjct: 369 VRAVSSRLGHANTSTTMNIYAHALQTADKQATDMMESI 406


>gi|301059574|ref|ZP_07200486.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300446339|gb|EFK10192.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 441

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 108/295 (36%), Gaps = 38/295 (12%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR--------------RTQK 82
           +SYE +   F  +L       + ++ IR +    ++  +                 + Q 
Sbjct: 143 RSYEQELSHFNNWLNPVIG-NMRLKDIRPMHLERVKQNLLSAQAMSRNREPKKGPVKKQA 201

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
              R ++   +  +    Y ++  + + E    +++  K  N   R L +++   L+   
Sbjct: 202 RSPRMIQYVFATGRQCWNYARRDGLVSNEWPGKDVKLPKVENQRMRFLTDEEGDQLL--- 258

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
                 + +     +  +L L    GLR  E  SL+   +  DQ  +++     K R+V 
Sbjct: 259 ---AGLKERSQQLHDICLLSL--DSGLRAYEIFSLSWNRVDLDQKLVKVFDSKGKDRVVY 313

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP--GVFQRYIRQLRRYLGLPLS 259
           L       +                  +F+   G+ +      F R +  L    G+   
Sbjct: 314 LTDRTVNMLRGL---------PRDNGLVFKSRTGEQIKEISNSFHREVDSLGWNDGVKSH 364

Query: 260 ---TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
                 H+LRHS+A+ L++ G DL  +  ++GH  L+ T+ Y+++        + 
Sbjct: 365 KDRLVFHSLRHSYASRLVARGVDLYVVGQLMGHSDLTMTKRYSHLRPDTLQAAVR 419


>gi|177654275|ref|ZP_02936204.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0174]
 gi|172080765|gb|EDT65846.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0174]
          Length = 376

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 101/289 (34%), Gaps = 31/289 (10%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             TL  Y+   R            +   + +  +    +  F  K   + +  + +    
Sbjct: 80  PSTLYQYKRILRS-------RVMPEFGEKRLSDIKPLSVHNFHQKLLKEGLTTKYISSVD 132

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +K  L    + ++   +     +  K       +   ++A+  ++            I
Sbjct: 133 VMLKQILDKGVELEMINSNPAKKAKRPKVKKKAQASWTVEEAMKFMEY---------AKI 183

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------------GKGDKIRIV 200
                    L    G+RI E L+L  ++I  +   + +Q            G+       
Sbjct: 184 QGSYYIAFVLALHTGMRIGEVLALQWKDINFESKVIHVQRTLTLVDGKYELGETKTEASN 243

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
            ++P  ++ + E  +      + N    L      K ++P   +  ++ L   + +P   
Sbjct: 244 RMIPMTQELMREPLEYQSHKKD-NSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPY-I 301

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
             H +R +F T L+ +G + + +  +LGH  +STT  IYT+V  +   +
Sbjct: 302 RFHDIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDVYEERQIE 350


>gi|307131117|ref|YP_003883133.1| Integrase/recombinase [Dickeya dadantii 3937]
 gi|306528646|gb|ADM98576.1| Integrase/recombinase [Dickeya dadantii 3937]
          Length = 139

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 4/83 (4%)

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L P      +    R  G+    + H  RH+ ATH+L NG DLR IQ++LGH  + +TQI
Sbjct: 24  LTPNGITNLVSHYIRASGIAKWGSCHLFRHAMATHMLENGADLRWIQAMLGHASVESTQI 83

Query: 298 YTNVNSKNGGDWMMEIYDQTHPS 320
           YT V+ +     +  ++  THP+
Sbjct: 84  YTQVSIR----ALQAVHASTHPA 102


>gi|288916689|ref|ZP_06411064.1| integrase family protein [Frankia sp. EUN1f]
 gi|288351944|gb|EFC86146.1| integrase family protein [Frankia sp. EUN1f]
          Length = 406

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 55/300 (18%), Positives = 98/300 (32%), Gaps = 47/300 (15%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-------- 82
           L   T   Y         +   Y +  I    +++L+   I    +   T          
Sbjct: 80  LRPSTWSKYRT-------YCDSYIKPVIGNTALQELTPVRINLLYAHLLTSGRRHQRTNQ 132

Query: 83  ---IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
              +   S+      +   L+   +      +   ++   K    +P    ++Q  T VD
Sbjct: 133 GAGLSPGSVAVVHRVLHRALRDAVRWNYLVRNPSDDVERPKLDRRVPTVWTKEQLRTFVD 192

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-----RI---- 190
           +V             R  A+  +    GLR    + L   ++  D  TL     RI    
Sbjct: 193 HVR----------GDRLYALYLVAITTGLRRGALVGLRRHDVDLDAGTLSSSRPRIVVDN 242

Query: 191 ------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGV 242
                        R + L P   KA+  + D    +          LF    G  ++P  
Sbjct: 243 KAVDGEHKTDSAYRPLVLDPVTAKALRVHVDRWEQERTEFGFTTDLLFCWPDGTGIHPDT 302

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNV 301
              + +   +  GLP+    H +RHS+AT  L +G   + +   LGH  ++ T   Y++V
Sbjct: 303 VTDWFQAHAKSAGLPV-IRLHDVRHSYATAALKSGVHPKIVSERLGHASVAFTLAYYSHV 361


>gi|138894424|ref|YP_001124877.1| DNA integration/recombination/invertion protein [Geobacillus
           thermodenitrificans NG80-2]
 gi|134265937|gb|ABO66132.1| DNA integration/recombination/invertion protein [Geobacillus
           thermodenitrificans NG80-2]
          Length = 387

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 97/319 (30%), Gaps = 55/319 (17%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT------ 80
            E+ LS  T ++Y         ++      ++    +  +    +  F++  +       
Sbjct: 78  AEKQLSPKTFETYNN-------YINTRIIPQLGHLQLADIKPIHLIRFLNNLKKDETRLD 130

Query: 81  ---QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                + + ++      +K+      + K    +    +   K+        +E +   L
Sbjct: 131 GKKGSLSEATINYYRRILKNIFNRAVEWKFLQVNPAEKLPKEKEDIGKGDVYDENETRLL 190

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK---- 193
           +  +           D +      L   CGLR  E L+L  ++I  +  TL ++      
Sbjct: 191 LKCLEKE--------DLKWRLYFTLALTCGLRKGELLALQWEDIDLESGTLYVKHSLSYT 242

Query: 194 ------------GDKIRIVPLLPSVRKAILEYYDLCPFDL----------NLNIQLPLFR 231
                           R + +   V   + +Y ++   +           N N     + 
Sbjct: 243 KEKGFFLKEPKSKKSKREIAIPSFVLPLLKKYKNVRLREKEKLQDEWEGGNYNFVFATWN 302

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           G       P           +   L      H LRH+ AT +L+NG + +++   LGH  
Sbjct: 303 GKPHHHSYPRTKWERF---LKRNNL-RYIRPHDLRHTSATIMLNNGVNYKTVSERLGHSS 358

Query: 292 LSTT-QIYTNVNSKNGGDW 309
              T   Y +   +     
Sbjct: 359 TRITFDFYVHRTKEADRSA 377


>gi|190015061|ref|YP_001966714.1| site-specific recombinase, phage integrase family [Bacillus cereus]
 gi|190015327|ref|YP_001967039.1| site-specific recombinase, phage integrase family [Bacillus cereus]
 gi|208702180|ref|YP_002267301.1| site-specific recombinase, phage integrase family [Bacillus cereus
           H3081.97]
 gi|218848243|ref|YP_002455093.1| site-specific recombinase, phage integrase family [Bacillus cereus
           AH820]
 gi|229125059|ref|ZP_04254223.1| Site-specific recombinase, phage integrase [Bacillus cereus
           95/8201]
 gi|116584737|gb|ABK00852.1| site-specific recombinase, phage integrase family [Bacillus cereus]
 gi|116585008|gb|ABK01117.1| site-specific recombinase, phage integrase family [Bacillus cereus]
 gi|208658035|gb|ACI30405.1| site-specific recombinase, phage integrase family [Bacillus cereus
           H3081.97]
 gi|218540294|gb|ACK92690.1| site-specific recombinase, phage integrase family [Bacillus cereus
           AH820]
 gi|228658403|gb|EEL14079.1| Site-specific recombinase, phage integrase [Bacillus cereus
           95/8201]
          Length = 230

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 78/187 (41%), Gaps = 13/187 (6%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G  K T+  Y    R F+         ++ I+ +  ++   ++ +I+K   +++   ++ 
Sbjct: 41  GFRKRTIDDYSKLFRYFM--------RELNIEKVEIITAAHVQMYINKLLNRELAPATVN 92

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             +S +KS  K L ++     +  ++   L+   +    LN  Q   +   V      +T
Sbjct: 93  IRISALKSVFKRLNEQGYIKSNPAVDFVKLRTDEAPIFTLNHNQIKRIFRVV-----DKT 147

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
            +   R+   + L+  CGLR++E   L   +I  D  T+ + G  +K R    +P  +K 
Sbjct: 148 TYAGYRDYCAMLLMLHCGLRVNEVNQLEANDIDFDNLTIMLAGAKNKNRKTRAVPMTKKV 207

Query: 210 ILEYYDL 216
             E   L
Sbjct: 208 AEELRML 214


>gi|15924992|ref|NP_372526.1| integrase [Staphylococcus aureus subsp. aureus Mu50]
 gi|49484247|ref|YP_041471.1| integrase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|118725054|ref|YP_908790.1| integrase [Staphylococcus phage phiNM3]
 gi|156980319|ref|YP_001442578.1| integrase [Staphylococcus aureus subsp. aureus Mu3]
 gi|253729788|ref|ZP_04863953.1| phage integrase [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|255006790|ref|ZP_05145391.2| integrase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|258434312|ref|ZP_05688713.1| integrase [Staphylococcus aureus A9299]
 gi|297589939|ref|ZP_06948579.1| integrase [Staphylococcus aureus subsp. aureus MN8]
 gi|14247775|dbj|BAB58164.1| integrase [Staphylococcus aureus subsp. aureus Mu50]
 gi|49242376|emb|CAG41088.1| integrase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|104641819|gb|ABF73161.1| integrase [Staphylococcus phage phiNM3]
 gi|156722454|dbj|BAF78871.1| integrase [Staphylococcus aureus subsp. aureus Mu3]
 gi|253726523|gb|EES95252.1| phage integrase [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|257849260|gb|EEV73241.1| integrase [Staphylococcus aureus A9299]
 gi|269941477|emb|CBI49874.1| integrase [Staphylococcus aureus subsp. aureus TW20]
 gi|297577067|gb|EFH95781.1| integrase [Staphylococcus aureus subsp. aureus MN8]
          Length = 345

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 112/278 (40%), Gaps = 18/278 (6%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           + T + Y    +          + KI    + +++    + FI+    +   + +++++ 
Sbjct: 74  ENTYRHYRNALQH-------IQKHKIGKMELSKINRQVYQKFINDYSKEHAKE-TIRKTN 125

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             I+S L       +  ++    + N K         +E++    V    +   H  K  
Sbjct: 126 GAIRSALDDALYDGLIFKNPAYKV-NYKAGKP---TKSEQEKFISVTEYEILKDHVRKKR 181

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
              + A+  ++   G R+S A ++  ++I   ++T+ I  +        +  S+ K+ ++
Sbjct: 182 TRSSLALF-IMICTGCRVSGARNIKIEHINQVKNTIFIDERKTNTSPRYI--SIAKSDMK 238

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +         ++    +F+      +N       ++   R   +P+  T+H LRH+  ++
Sbjct: 239 HIMDVISTFAISYDGYIFKEGGSI-INLHAINNALKSACRVNNIPI-ITSHALRHTHCSY 296

Query: 273 LLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDW 309
           LL+ G  +  I   LGH  ++ TT +Y+++  +   + 
Sbjct: 297 LLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEE 334


>gi|313206734|ref|YP_004045911.1| integrase family protein [Riemerella anatipestifer DSM 15868]
 gi|312446050|gb|ADQ82405.1| integrase family protein [Riemerella anatipestifer DSM 15868]
 gi|315023805|gb|EFT36807.1| phage integrase family protein [Riemerella anatipestifer RA-YM]
 gi|325335826|gb|ADZ12100.1| integrase [Riemerella anatipestifer RA-GD]
          Length = 402

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 58/288 (20%), Positives = 114/288 (39%), Gaps = 35/288 (12%)

Query: 38  SY-ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGI 95
           SY   D ++F+ F    ++ K     ++ L +  I  F    +T+ K    ++ +SL   
Sbjct: 139 SYIRDDVKEFIKFHYKKSDIK-----LKDLDFNFITEFEYYSKTELKHQQVTINKSLQRF 193

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
           K  +K    +K    +        KK       L +++   L  ++      +++ ++  
Sbjct: 194 KKVVKQAVIQKYLESNPFEE-HKPKKVYPKIVFLTQEELYKLEHHIF-----QSEILNQV 247

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRIVP----LLPSVRKAI 210
               L+  Y  GL   E   L  ++++        I  K DK         +LP   K I
Sbjct: 248 KDCYLFCCY-TGLAYKEMFDLKKEDLITKPDGVTWIYKKRDKTGRNFSVPLILPKALKVI 306

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            +Y     + L                ++   F R ++++   L +P + T HT R +FA
Sbjct: 307 EKYSSESEYLL--------------PRVSNQYFNRLLKEIAFVLKIPKNLTHHTGRKTFA 352

Query: 271 TH-LLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQ 316
           +  LL+N   +  I  +LGH +++TTQ  Y  +      + + ++ D+
Sbjct: 353 STVLLNNDIPIEVISKLLGHSKITTTQEYYAELMPNKLSEQLNKLKDK 400


>gi|21222400|ref|NP_628179.1| integrase [Streptomyces coelicolor A3(2)]
 gi|15021279|emb|CAC44721.1| putative integrase [Streptomyces coelicolor A3(2)]
          Length = 380

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 99/287 (34%), Gaps = 40/287 (13%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            L   T  SY       +  +       +  + +  L    +  ++   RT+ +    ++
Sbjct: 86  QLKHKTQASYRSLINSLINPV-------LGDRELSSLRPITVTEWVGAMRTKGLSASRIR 138

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           ++   +   ++      +  ++    +R  +   + P  L   +A  +V           
Sbjct: 139 QAYRVLSQIMRSAVDNDMIPQTPCRGVRLPRMPQTEPHILTPLEASRIV----------- 187

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--------------QGKGD 195
           K     +  ++ LL   GLR+ EA +L   ++      + +                K  
Sbjct: 188 KGATKPHDLLIALLAYAGLRVGEAFALRRVDVDVSGGFVLVDENLAEANGVLVFDTPKSH 247

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-YIRQLRRYL 254
           + R++ + PS+ K +  + +     L       LF    GKPL    +++ Y        
Sbjct: 248 QKRLLRVGPSLAKRLGRHLET----LPGGDDALLFTTPGGKPLRYNQWRKAYFDPAVSAA 303

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTN 300
           GL    T H LR S  T +    G + +    LGH   S TT+ Y  
Sbjct: 304 GLT-DVTPHDLRASHGTWVADRYG-VMTAAHRLGHSNASVTTRHYAR 348


>gi|254497030|ref|ZP_05109859.1| putative integrase/recombinase XerD [Legionella drancourtii LLAP12]
 gi|254353746|gb|EET12452.1| putative integrase/recombinase XerD [Legionella drancourtii LLAP12]
          Length = 233

 Score = 99.3 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 82/201 (40%), Gaps = 12/201 (5%)

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
           LN+        LP    E +           T  E+  I      I+ +L   G+R+SE 
Sbjct: 38  LNIEVTTTPKRLPYVPTEDEIRLFY-----KTVWESHDIIPM--LIVKVLLYTGIRVSEL 90

Query: 174 LSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
           +++   +I      ++I QGKG K R+VP  P+ ++ +  +      +     ++ LF  
Sbjct: 91  INIQLCDIDLTNCRIKINQGKGKKDRVVPFSPAFKETLALHLKQYKNE----NRMFLFES 146

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
              +       ++ + +  R  G+  S + H LRH   T L     D   IQ   GH + 
Sbjct: 147 GFRRHYTDRGIRKILMRYTRLAGIERSISPHKLRHFLFTWLKKQNIDDAFIQPYSGHAKR 206

Query: 293 STTQIYTNVNSKNGGDWMMEI 313
            + +IY+ ++  +  D   ++
Sbjct: 207 DSLEIYSKLSLADAQDKYNDV 227


>gi|313903463|ref|ZP_07836854.1| integrase family protein [Thermaerobacter subterraneus DSM 13965]
 gi|313466284|gb|EFR61807.1| integrase family protein [Thermaerobacter subterraneus DSM 13965]
          Length = 383

 Score = 99.3 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 54/318 (16%), Positives = 117/318 (36%), Gaps = 42/318 (13%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDT-RQFLIFLAFYTEEKITIQTIRQ 65
           PE +S  + +  + WL ++     ++  T   YE    R  +  L  Y  +K+    I+ 
Sbjct: 60  PEKMS--VAEYLRFWLGDIRS--RVAPTTFHRYEIIVERHLIPALGKYQLQKLRPAHIQA 115

Query: 66  LSYTEIRAFISKRRTQ--KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
                +      RR     +  R++      +   L++  + ++   +    ++  +   
Sbjct: 116 YYRDALEN---GRRDGKGGLSKRTVLHHHRVLHEALEHAVQLQMLARNPADAVKPPRPER 172

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
              R L++ +   L++     T+  +++        + L    G+R  E L+L  +++  
Sbjct: 173 KEMRVLDKDEIERLLE-----TARRSRYYIP-----ILLAIATGMRRGEILALRWEDVDL 222

Query: 184 DQSTLRIQ---------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDL-----NL 223
           +   + ++                     R++ + P V +A+  +      +        
Sbjct: 223 EGGRISVRQTLVKTGDGLQFTDPKTDRSRRVIRIGPLVVQALRRHRAQQAQEKLRLGPAY 282

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                +     GKP +P  F +    L +  G P     H LRHS AT LL +G  ++++
Sbjct: 283 QDHGLVCAQANGKPYDPAEFSKAFTSLAKRAGFP-DLRFHDLRHSHATLLLRDGTPIKAV 341

Query: 284 QSILGHFRLS-TTQIYTN 300
              LGH   + T   Y +
Sbjct: 342 AERLGHASAAFTLDTYGH 359


>gi|319760129|ref|YP_004124068.1| integrase family protein [Alicycliphilus denitrificans BC]
 gi|317119735|gb|ADV02223.1| integrase family protein [Alicycliphilus denitrificans BC]
          Length = 637

 Score = 99.3 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 64/346 (18%), Positives = 120/346 (34%), Gaps = 70/346 (20%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE-------------------IRA 73
             T +SY  +  + L++      + ++  ++   S  +                      
Sbjct: 292 AHTRRSYRREAERLLLWAVLERGKALSSLSVEDASAHQEWLYALGRTPEGYWRWKIPQEK 351

Query: 74  FISKRRTQKIGD-----------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           ++  R T +              RS ++S   +KS  ++L K +    +    +      
Sbjct: 352 WLGPRNTARWSPDWRPYEGALSLRSQQQSYVILKSLCEWLTKMRYLDSNPFDGVAKPNIE 411

Query: 123 NS-------LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
            +       L  AL+  Q   + +        E      R   IL L Y  GLR+SE + 
Sbjct: 412 VAGASPDIELTHALSRGQWDFITEFKDRQPDEERT---QRLRFILALAYATGLRLSELVD 468

Query: 176 LT--------PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC------PFDL 221
                      ++ M  +  L+  GKG K R+VP+   V + + +Y+             
Sbjct: 469 AKAGRLYAKERKSGMGLRWMLKTLGKGQKWRVVPVPSPVMQEMAKYFAARGLPNPLTHLN 528

Query: 222 NLNIQLPLF--RGIRGKPLNPGVFQRYIRQ-------------LRRYLGLPLSTTAHTLR 266
            ++ + PL    G  G  L+  +  + +++                        + H LR
Sbjct: 529 EIDAETPLIASLGGDGHALSSSMLYKTLKRFFADVATEMRKQEHFEDAHKVAQASTHWLR 588

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           H+  +H       L  +Q +LGH  LSTT IYTN +  +  + M +
Sbjct: 589 HTRGSHSAEA-MPLHMLQRLLGHASLSTTTIYTNADEDDLYEAMEK 633


>gi|238786957|ref|ZP_04630757.1| Integrase [Yersinia frederiksenii ATCC 33641]
 gi|238724745|gb|EEQ16385.1| Integrase [Yersinia frederiksenii ATCC 33641]
          Length = 334

 Score = 99.3 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 90/236 (38%), Gaps = 30/236 (12%)

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
           + + ++ R  S + +    LK+       + +  +R   + +     L++ +   L+ + 
Sbjct: 123 VKEATVNREQSYLHAVFSELKRLGEWEGSNPLDGIRQFSEGDQELAFLSQDEIKRLLVSC 182

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
                 E K +      I+ L    G R  EA  +    I+  + T  I  KG K R VP
Sbjct: 183 D---ESENKSLG----TIVRLCLATGARWGEAQDMKQSQILPSRVT-YINTKGKKNRTVP 234

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           +   + K I               +  LF        +   F+  +++      LP    
Sbjct: 235 ISEKLFKRI------------PKNRGALFTP------SYDAFKHALKRAAIE--LPKGQR 274

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM-EIYDQ 316
            H LRH+FA+H +  GG++  +Q ILGH  +  T  Y +    +    +    YD+
Sbjct: 275 THVLRHTFASHFMMGGGNILVLQQILGHSTILMTMRYAHFAPNHLDAAIALNPYDK 330


>gi|15612006|ref|NP_223658.1| integrase/recombinase (XERCD family) [Helicobacter pylori J99]
 gi|4155519|gb|AAD06517.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Helicobacter pylori J99]
          Length = 331

 Score = 99.3 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 57/239 (23%), Positives = 103/239 (43%), Gaps = 9/239 (3%)

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
            R  + +    + + +  ++ F  Y  +KR+   +  + N+   K   SLPR LN+K   
Sbjct: 82  YRELECLVKSKMAKYVMYLRQFFDYLDRKRRYGFDFTLKNLAFAKTKESLPRHLNDKDLK 141

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGK 193
           + +  +L +    +   + RN  IL ++   GLR  E L++  ++I  ++   ++ IQGK
Sbjct: 142 SFLKTLLDYKPATS--FEKRNKCILLIVILGGLRKCEVLNIELKHIQVEEQNYSILIQGK 199

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R   +  S+ +  L  +    + L       LF+  + K  N      +I  + + 
Sbjct: 200 GRKERKAYIKKSLLEPSLNAWISDDYRLKYFNGAYLFKKDKQKSQNSLTLYNFIPLIFKL 259

Query: 254 LGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
             +       T  H  RHSFAT +     DL      LGH  L +T+IY +   ++   
Sbjct: 260 AQIKHYKQYGTGLHLFRHSFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHNKK 318


>gi|329667143|gb|AEB93091.1| putative prophage integrase [Lactobacillus johnsonii DPC 6026]
          Length = 391

 Score = 99.3 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 62/292 (21%), Positives = 113/292 (38%), Gaps = 46/292 (15%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
               Q + +++  E++ +  ++  Q +  R      + +    +Y  +    +E+ +  +
Sbjct: 106 DFGNQYVDKITVAELQKWADRKAKQIVKYRDAINEFNAL---FEYGIRLNYVSENPLKRI 162

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
              KK++  PR   E    T   + L       K           LL   GLR SEAL+L
Sbjct: 163 IIPKKTSR-PRRDTEHNVYT--RDELNQFLEVAKEYGLVQYTYFKLLSATGLRKSEALAL 219

Query: 177 TPQNIMDDQSTLRIQGK----------------GDKIRIVPLLPSVRKAILEYYDLCPFD 220
           T Q+I     TL +                       RI+P+  S+++ +++Y       
Sbjct: 220 TWQDIDLKAGTLSVNKTLAYGLDNKTIIQPPKSPKSKRILPISDSLKEVLIDYKQKQKII 279

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIR-----------QLRRYLGLP------LSTTAH 263
            N      LF  I+G  L      ++++           +  +   L          T H
Sbjct: 280 SNK-----LFHTIKGTYLKMSKPDQWLKSIYAKDHEEKVKYAKTHNLKEPQPDLRHITVH 334

Query: 264 TLRHSFATHLLSN-GGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
             RH+FAT L++      +++Q +LGH  +  T  IYT+VN+KN  D +  +
Sbjct: 335 GFRHTFATLLIAETNVKPKTVQMLLGHENIQMTLDIYTHVNNKNKEDAVNAL 386


>gi|314938400|ref|ZP_07845691.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
 gi|314942325|ref|ZP_07849173.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|314951459|ref|ZP_07854509.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|314993130|ref|ZP_07858516.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|314996013|ref|ZP_07861091.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313589767|gb|EFR68612.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313592370|gb|EFR71215.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|313596416|gb|EFR75261.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|313598942|gb|EFR77787.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|313642298|gb|EFS06878.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
 gi|315579058|gb|EFU91249.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0630]
          Length = 393

 Score = 99.3 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 79/232 (34%), Gaps = 33/232 (14%)

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSN--SLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
             L+Y    +    + +      +K       +  ++++   L+D           + + 
Sbjct: 153 QILRYGVAMQYIDNNPMEKTLLPRKKEYEKNRKFYSKEELNNLLDAF-------KDFGNM 205

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------------GDKIR 198
           +  A   LL   G+R SE L+L  ++I      L +                       R
Sbjct: 206 KQYAFFRLLAYTGMRKSEVLALQWKDIDTFNKELHVNKTLAVDEFGKVIIQSPKTRASRR 265

Query: 199 IVPLLPSVRKAILEYYDLCPFDL------NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           ++ L       +  +      +         + +  +F  ++     P     ++R + +
Sbjct: 266 VISLDTETLSILNNWKLQQKEEYLKLGYNTSSKEQHVFTTVKNTLYIPNTVNDWLRYILK 325

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
              LP   T H  RH+ A+ LL  G  ++ +Q  LGH     T  IY ++ +
Sbjct: 326 KYNLPR-ITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLDIYAHITN 376


>gi|89147476|gb|ABD62598.1| integrase [uncultured bacterium]
          Length = 163

 Score = 99.3 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 46/93 (49%)

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           A  E+     F  +   + P    +R         Q+ ++   R  GL      HT RH 
Sbjct: 70  AAREWGWQYAFPASRRSRDPESGKVRRHHTFETNVQKAVKVAARISGLVKKVGPHTFRHC 129

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           FATHLL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 130 FATHLLEDGYDIRTVQELLGHKDVKTTMIYTHV 162


>gi|89147679|gb|ABD62698.1| integrase [uncultured bacterium]
          Length = 163

 Score = 99.3 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 3/99 (3%)

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            P++ K++   Y      L  + +  ++   R   +     QR +R   +  G+    T 
Sbjct: 67  YPNLAKSLQWQYVFPAGKLVWDQETTVW---RRHHMFEDTLQRAVRAAGQLAGIEKPVTC 123

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           H LRHSFATHLL  G D+R++Q ++GH  + TT IYT+V
Sbjct: 124 HMLRHSFATHLLEQGCDIRTVQQLMGHKHVETTMIYTHV 162


>gi|158311904|ref|YP_001504412.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158107309|gb|ABW09506.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 373

 Score = 99.3 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 55/328 (16%), Positives = 104/328 (31%), Gaps = 48/328 (14%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRS 87
           R L+  T++      R F      +             +   +  + +  R  + +   +
Sbjct: 43  RNLAVGTVEGRVRAVRAFTRHAEAFPW---------AWTAAMVDEWCTDLRAVRNLRRST 93

Query: 88  LKRSLSGIKSFLKYL-----------------KKRKITTESNILNMRNLKKSNSLPRALN 130
           L+     ++ F  Y+                    +I  E N        +S+   RA  
Sbjct: 94  LRNYQEAVRLFCVYVTDPAYGWPVRCEQEFGAHPVQICHEWNTTVHAQQSESDPGKRAFT 153

Query: 131 EKQALTLVDNVL-----LHTSHETKWIDAR-NSAILYLLYGCGLRISEALSLTPQNI--- 181
             +     D        +  +    W+ A  ++ +  + Y  GLR  E   L   +    
Sbjct: 154 VDELQAFFDYADEQVSRIRAAGRKGWLPAFRDAVLFKVAYAYGLRRREVRMLDLADFGRN 213

Query: 182 -----MDDQSTLRIQGKG-------DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
                  D    +++           +  ++ +     + + E+ +     L       L
Sbjct: 214 PHGPEFGDYGVCQVRFGKASKGSPPKRRGVLTVWTWTPEILAEWVEEFRPLLAPQDCPAL 273

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           +   R   +            R  LGL  +   H+LR S+ THL+ +G D   +Q  +GH
Sbjct: 274 WPSERAPRVALTQINARFSTYRDALGLDPALDVHSLRRSYVTHLIEDGYDALFVQQQVGH 333

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
              STT IY  V+S      +    DQT
Sbjct: 334 EHASTTAIYICVSSDFRTRTLRRALDQT 361


>gi|290770043|gb|ADD61807.1| putative protein [uncultured organism]
          Length = 372

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 57/275 (20%), Positives = 103/275 (37%), Gaps = 39/275 (14%)

Query: 62  TIRQLSYTEIRAFISKRRT--------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI 113
           T  ++     R F+             QK+   S     S  ++ L    + +   E+  
Sbjct: 127 TFEEVDVDLCRKFMEYLLNAPQSIHTNQKLHINSAAGYWSAFRAVLHTAYRDRKIKENPN 186

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
             +  ++   ++   L++++ + L          ET   +             GLR S+ 
Sbjct: 187 GFLDCIESIPTMREHLSQEELIRL---------AETPCEEEVLKRAFLFGCLTGLRKSDI 237

Query: 174 LSLTPQNIMDD-QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232
             LT Q I       + +  +  K + +   P   +A           L    +  +F G
Sbjct: 238 KQLTWQQIQPYTNGKMFVTTRMQKTKQIVHNPISDEA--------YGLLGERCEGLIFDG 289

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
            + K L     Q  +++     G+    T H  RHSF +  +  G D+  IQ+ LGH  +
Sbjct: 290 FKDKML-----QGPLKRWLLAAGITKKITFHCTRHSFGSLHVEMGTDMAVIQAYLGHKNI 344

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
           +TTQIY+ + ++     M E+ D+    IT K KK
Sbjct: 345 TTTQIYSKMAARQ----MCEVVDK----ITLKRKK 371


>gi|299142947|ref|ZP_07036073.1| integrase [Prevotella oris C735]
 gi|298575563|gb|EFI47443.1| integrase [Prevotella oris C735]
          Length = 421

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 66/319 (20%), Positives = 129/319 (40%), Gaps = 31/319 (9%)

Query: 14  LLKERQNWL----QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLS 67
           LL+    +L    + + I+R L    L++Y+      L  L  Y ++K  +  I   QL 
Sbjct: 125 LLESFGEYLTQTKERIGIDRALKTFKLRTYQ------LSLLREYVQKKHKVSDIPLSQLD 178

Query: 68  YTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
              I  F       +K+   S+  +LS +++ ++   K+ +      L   + ++    P
Sbjct: 179 KAFIEGFEYYLTIDRKLKRSSISSTLSTLQTIVRIAVKKGVLDFYPFLGY-SYERPKGEP 237

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R++ +++   ++D   L    E   I      +       GL I +  +L  +NI+ ++ 
Sbjct: 238 RSITQEELEHIID---LEIEWENYRIV---RDLFVFSCFSGLAIFDVRNLREENIVLEEG 291

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
            L I+G+  K +    +  +  A                 +P             V    
Sbjct: 292 ELCIKGRRMKTKTPYRVQVLPPAQTIMNRYRGIRAGFVFDVP----------TTDVILNG 341

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           +  ++R +G+    T H  RH+FA+ + LS G  + ++  +LGH  L TTQ+Y  V+S+ 
Sbjct: 342 MHYIQRNIGMETPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSER 401

Query: 306 GGDWMMEIYDQTHPSITQK 324
               M  +  +   + T K
Sbjct: 402 IHRDMQIVQQRIQDTFTLK 420


>gi|224024181|ref|ZP_03642547.1| hypothetical protein BACCOPRO_00904 [Bacteroides coprophilus DSM
           18228]
 gi|224017403|gb|EEF75415.1| hypothetical protein BACCOPRO_00904 [Bacteroides coprophilus DSM
           18228]
          Length = 319

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 58/315 (18%), Positives = 113/315 (35%), Gaps = 37/315 (11%)

Query: 14  LLKERQNWLQNLEIER----GLSKLTLQSYE---CDTRQFLIFLAFYTEEKITIQTIRQL 66
           LLK  +    N E E+      ++ T   Y       R+FL     Y  E I ++ +   
Sbjct: 27  LLKLFEQ--HNAEFEKKVGHSRAQGTFTRYRTVCNHIREFLPH--TYKREDIPLKELNLT 82

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSL 125
              +   F+  R  +K    ++   +  +K  +   +       +     + + +  +  
Sbjct: 83  FINDFEYFL--RTEKKCRTNTVWGYMIMLKHIVSIARNDGRLPFNPFAGYINSPENVDR- 139

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN---IM 182
              L + +  TL++  + + +HE          +       GL  S+  +LT        
Sbjct: 140 -GYLTQTEIQTLMNAPMKNATHELV------RDLFVFSVFTGLAYSDVKNLTTDRLQTFF 192

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           D    +  + K         L  V K I+E Y     D ++               + G 
Sbjct: 193 DGNLWIITRRKKTNTESNIRLLDVPKRIIEKYKGLARDGHVFPVP-----------SNGS 241

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHS-FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             + ++ + R  G  +  T H  RH+   T LLS+G  + ++  +LGH  + TTQIY  +
Sbjct: 242 CNKILKDIGRQCGFKVRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDIKTTQIYAKI 301

Query: 302 NSKNGGDWMMEIYDQ 316
            ++     M  +  +
Sbjct: 302 TAQKISQDMETLSHK 316


>gi|119900013|ref|YP_935226.1| truncated integrase/recombinase [Azoarcus sp. BH72]
 gi|119672426|emb|CAL96340.1| truncated integrase/recombinase [Azoarcus sp. BH72]
          Length = 254

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 87/218 (39%), Gaps = 28/218 (12%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + +  LL + +  ++     +  S  T Q Y    R FL F          ++  R++  
Sbjct: 1   MTAVRLLDQVRARIRY----KHYSLGTEQQYVYWVRTFLRFH--------GVRHPREMGA 48

Query: 69  TEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
           TE+  F+S   T +K+   + K++LS +    + +          +      K    LP 
Sbjct: 49  TEVEQFLSWLATDRKVAVSTHKQALSALLFLYRNVLG---VDLPWLSEFERPKTPVRLPS 105

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
            L+ ++   L+D +    +            +  L+YG G+R+ EAL L  +++   +  
Sbjct: 106 VLSGEEVSALLDAMEGSNAD-----------LARLVYGTGMRLREALRLRVKDVDFQRRL 154

Query: 188 LRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
           + ++ GKG+K RIV L      A+ E           +
Sbjct: 155 IVVREGKGNKDRIVMLPHRCSNALREQLHRAYLLWAQD 192


>gi|330950596|gb|EGH50856.1| Phage integrase [Pseudomonas syringae Cit 7]
          Length = 473

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 54/329 (16%), Positives = 113/329 (34%), Gaps = 40/329 (12%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M    LPE+    +L               L   T++ Y   T+ ++ F       + T 
Sbjct: 1   MNTMTLPELTQEYILTH------------DLRPDTVKIYRAATKAYVNFFGECLACETTH 48

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT--ESNILNMRN 118
           + +     +E+         ++I  RS     S +++  +Y  +  +     + + + R 
Sbjct: 49  RDMLDWRRSEL---------ERISKRSWNTYSSHLRTVYRYAMEHGLVELKVNPLKDTRV 99

Query: 119 LKKSNSLPRALNEKQALT------LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           +          N+           LV   L               A+    Y  G+R++ 
Sbjct: 100 MPTKRPKKTIGNDTIVRARNWLRFLVQEELSTGKRSEITPAWFWLAVFETFYYTGIRLNA 159

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVP-------LLPSVRKAILEYYDLCPFDLNLNI 225
            L L  +N+   Q  +R++G+ +K            L+P +   +     +     +   
Sbjct: 160 LLCLRYENVDLSQRLIRVRGETEKTHREFMIPIPDGLMPHLVLVMDTAKKVGFSATDQIF 219

Query: 226 QLPLFRGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRSI 283
            +  F G  +   +N    +   ++L    G     T H  RH+ A+ L+     ++   
Sbjct: 220 NINRFSGHYKRAQMNSDQVEAMYKKLTAMTG--TRMTPHRFRHTIASELMRQPERNIHIT 277

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           +++L H  ++TT  Y   + +   D M E
Sbjct: 278 KNLLNHSNIATTMEYIEPDYELMRDVMNE 306


>gi|258509880|ref|YP_003172631.1| phage-related integrase [Lactobacillus rhamnosus GG]
 gi|257149807|emb|CAR88780.1| Phage-related integrase [Lactobacillus rhamnosus GG]
 gi|259651144|dbj|BAI43306.1| phage integrase [Lactobacillus rhamnosus GG]
          Length = 385

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 110/302 (36%), Gaps = 36/302 (11%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
            T++  E    +       +       + I  ++  +++   + +R  +    + KR  +
Sbjct: 84  NTVR--ESTWARTAGMFNNHILPAFGGKRIATITTKDVQK--AVKRWFEFTSANYKRWYN 139

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSN---SLPRALNEKQALTLVDNVLLHTSHETK 150
            + S + Y  ++   +++    +      +     P     K+ +      +   +H   
Sbjct: 140 YVSSVMDYAVRQGYMSKNPAKAVVLPHHDDLAGDKPENFWTKEQMNHFFACIDQENHFDV 199

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------------G 194
           +I      +  +L   G+R  E L+LT  ++   ++++++                    
Sbjct: 200 FI------MFRVLAFTGVRRGELLALTWNDVSFKENSIKVNKTLTQGDKGHQIVQAPKTR 253

Query: 195 DKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIR 248
              R +P+       +  +          L +N   P   LF   +    +     + + 
Sbjct: 254 AGRRTIPVDGQTMAYLKRWRRIQQETFLQLGINTMQPNQLLFTNTKNGYQSLNTPSKRLH 313

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGG 307
           +L+   GL    T H  RHSF ++LL  G  + S+Q ++GH   + T  +Y +V++K   
Sbjct: 314 KLQDDNGLTPRITIHGFRHSFISNLLIAGVPVTSVQKLVGHTDPTITLGVYAHVSAKQES 373

Query: 308 DW 309
           + 
Sbjct: 374 EA 375


>gi|238062907|ref|ZP_04607616.1| phage integrase [Micromonospora sp. ATCC 39149]
 gi|237884718|gb|EEP73546.1| phage integrase [Micromonospora sp. ATCC 39149]
          Length = 477

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 65/318 (20%), Positives = 110/318 (34%), Gaps = 42/318 (13%)

Query: 20  NWLQN-LEIERGLSKLTLQSYECDTR-QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            WL+  L    G+   TL+SY      Q +  L  +      +  +  L  T   A I++
Sbjct: 88  RWLRYWLSTNLGIRPSTLRSYTDHVEHQLIPHLGRHR-----LTDLTNLHVTATFAHIAE 142

Query: 78  ---RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
              R  +     +L R  + ++S L    +  +  ++    +R  K      R   + + 
Sbjct: 143 TPNRHGRPPTPSTLHRIRATLRSALNAAIRHGLLRDNPARFVRLAKPRRPQARVWTDHRV 202

Query: 135 LTLVDNVLLHT----------SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
               D+   +                  D R +A+ +L+   GLR  EA  L   ++   
Sbjct: 203 KAWRDHGERYAVAVWTTQQLAHFLDHTADDRLTAMWWLISLRGLRRGEAAGLRWVDVDLT 262

Query: 185 QSTLRI---------------QGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLN 224
              + I                      R + L  +    + ++             +  
Sbjct: 263 GRVITIDQQRIAYGQTVTVGPPKTAASRRTIALDHTTLTILRQHRRRQLTEQTEHAADWT 322

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
               +F    G+PL+P    R  R+L    GLP     H LRH  AT   S G DL+++Q
Sbjct: 323 DSGYVFTQPDGQPLHPDYLTRRFRRLVTESGLP-PVRLHDLRHGAATLAHSAGADLKTVQ 381

Query: 285 SILGHFRLS-TTQIYTNV 301
             LGH  +  T   YT+V
Sbjct: 382 EQLGHTSIVLTADTYTSV 399


>gi|224025612|ref|ZP_03643978.1| hypothetical protein BACCOPRO_02352 [Bacteroides coprophilus DSM
           18228]
 gi|224018848|gb|EEF76846.1| hypothetical protein BACCOPRO_02352 [Bacteroides coprophilus DSM
           18228]
          Length = 219

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 88/230 (38%), Gaps = 18/230 (7%)

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            L  +K  +K    +K  T+     +   K++      L+E +   +++        +T 
Sbjct: 3   YLKNLKKIIKTALIKKWITDDPFAEIH-FKQTKCNREFLSENELRKIINKDFDIQRLQTV 61

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRIQGKGDKIRIVPLLPSVR 207
                   I       GL  ++  +L  ++     + +  +R   +         L  + 
Sbjct: 62  ------RDIFIFCCFTGLAFTDVKNLKKEHLVQADNGEWWIRKVREKTDNMCDIPLLDIP 115

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + ILE Y   P      + LP+    R           Y++++    G+  + + H  RH
Sbjct: 116 RLILEKYQSNPICNEKGLLLPVPSNQRM--------NSYLKEIADVCGIQKNLSTHIARH 167

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           +FA+  ++N   L SI  +LGH  + TT+IY  + +    + M  + ++ 
Sbjct: 168 TFASLAIANKVSLESIAKMLGHTDIRTTRIYAKIMNSTIANEMKVLQNKF 217


>gi|330685083|gb|EGG96750.1| site-specific recombinase, phage integrase family [Staphylococcus
           epidermidis VCU121]
          Length = 406

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 56/292 (19%), Positives = 106/292 (36%), Gaps = 33/292 (11%)

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
           ++++ I  I      +I    +   ++      +    S  K   KY   + I+    I 
Sbjct: 109 DKEVLINNITHTYLQDIINNWASIHSKGHVQSLVIIIRSVFKYAFKYYDLQDISVLDKID 168

Query: 115 NMRNLKKSNSLPR----ALNEKQALTLVDNVLLHTSHETKWIDARNS----AILYLLYGC 166
             +  K  + L       L + +   L+        H+      RN     AI+      
Sbjct: 169 IPKKAKTRDELQAKRNNYLEDSEIKELLSCFDYLIKHKKHSTRKRNYKMVKAIVQFQIAN 228

Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV------------------------PL 202
           G+RI E L++  +NI  +  TL I G  + +                             
Sbjct: 229 GMRIGELLAIKRENINYEDKTLDIDGTINWVTDKETGAFGVKETTKTSKSYRTIGLTTQS 288

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           +  ++  IL+      ++ +   +  +F    G P++       I++      +    T 
Sbjct: 289 INLLKTLILDNKKENQWNEDFIDRGYVFTNTAGSPIDLNKVNSIIKEATEISSIKKRVTT 348

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           HTLRH+  + L   G +L++IQ  +GH    TT +IYT+V  +   D M ++
Sbjct: 349 HTLRHTHISTLAQLGINLKAIQERVGHSDYKTTLEIYTHVTDQMAKDMMDKL 400


>gi|312887736|ref|ZP_07747325.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311299831|gb|EFQ76911.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 412

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 56/293 (19%), Positives = 106/293 (36%), Gaps = 34/293 (11%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-------IGDRS 87
           T+++Y    R    FL    ++K     + QL Y  +  F    R ++         + +
Sbjct: 129 TMKNYFTTERYVKEFL--LKKKKRHDIYLSQLDYKFVVDFEIYLRQREPDKNQRPCANNT 186

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           + + +  ++  +    K +   +   L       +        +++AL L +   +    
Sbjct: 187 VMKHIERLRKMINIAVKNEWLIKDPFLRFERKIVNK-------DREALELEEIENIKGVK 239

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLT----PQNIMDDQSTLRIQGKG----DKIRI 199
             K        +       GL  ++   L       +I  ++    I+ K      K   
Sbjct: 240 LDKDGQRIVRDVFIFSCYTGLSFADMCLLNNNHLVTDIEGEKWIEMIRHKTANFSGKKFF 299

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           V LLP   + I  Y +         I  P+F        +     RY++ + +   +   
Sbjct: 300 VLLLPEAIELINRYRNHPMAGYTKTI-FPVF--------SNQATNRYLKAIAKEAKVDKK 350

Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
            T H  RH+FAT + L NG  + ++  +LGH  L TTQIY+ +  K   + M 
Sbjct: 351 LTFHIARHTFATTITLENGVPMETVSGMLGHASLRTTQIYSKIKKKKVSNDMK 403


>gi|298345180|ref|YP_003717867.1| phage family integrase/recombinase protein [Mobiluncus curtisii
           ATCC 43063]
 gi|298235241|gb|ADI66373.1| phage family integrase/recombinase protein [Mobiluncus curtisii
           ATCC 43063]
          Length = 222

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 90/245 (36%), Gaps = 31/245 (12%)

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +     +     +     + +K F  +   R    E+  L +  +K+ + +PR + +   
Sbjct: 3   LEYVSAKPWQSETRHSYYASLKQFFAW-YSRIYKYENPALVLPTVKRGSPMPRPIPD--- 58

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQG 192
             L+   L   +   +      +           R  E   +   +I       +L + G
Sbjct: 59  -NLLAEALAGCTPRHRLALELAALAGL-------RSGEVARVNAGDITEDLLGYSLVVHG 110

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG+K R+VP+   +  +I         DL       +F G  G  + P    +    L  
Sbjct: 111 KGNKQRVVPITDGLAASIR--------DLAEPGTGWVFPGADGGHVTPRWISKLGANL-- 160

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              LP   T HTLRH F TH  +   DL ++Q +LGH  +STTQ Y     +   D M  
Sbjct: 161 ---LPSPWTMHTLRHRFGTHAYAGDRDLVAVQRLLGHASVSTTQRYV----EPPSDAMRR 213

Query: 313 IYDQT 317
             +  
Sbjct: 214 AANSA 218


>gi|323340058|ref|ZP_08080324.1| integrase XerC family protein [Lactobacillus ruminis ATCC 25644]
 gi|323092564|gb|EFZ35170.1| integrase XerC family protein [Lactobacillus ruminis ATCC 25644]
          Length = 396

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 53/325 (16%), Positives = 114/325 (35%), Gaps = 46/325 (14%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            +L+  + ++ +   T   Y+        F+  +  + I I  I Q S       +    
Sbjct: 80  AFLE--QYQKRVQPST---YKNGALFIKKFVDDFGHDTI-ISNISQRSLNRYFNDMLYNN 133

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-------NLKKSNSLPRALNEK 132
            + + + +++   + +     +        ++NI  ++         K++    + L + 
Sbjct: 134 ERDLTNGTVRAIKNKVSVLFDFAVTYGYLKDNNIKKVKIEWKNENARKRNQIENKYLTQD 193

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRI 190
           +   ++D+ L++ +          + +  L Y  G+R  EA  L  Q+++ +     L I
Sbjct: 194 EYRKIIDDCLINGAD-------HYADVFKLQYLTGMRFGEASGLRVQDVIKENGKTYLDI 246

Query: 191 QG------------------KGDKIRIVPLLPSVRKAILEYYDLCPFD---LNLNIQLPL 229
                                   +R + L P   K +  +      D      N   P 
Sbjct: 247 NHSLVFLSSPSRYYLSDSTKTFAGMRKIILSPEATKIVERHMRNKDLDALLFAYNPSAPH 306

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F   +  PLN       ++++     +    T H  RH+  + L      LR I+  +GH
Sbjct: 307 FADQK--PLNINNANTMLKRIIERQKIDKDVTTHYFRHTHVSVLADMDVPLRVIKDRIGH 364

Query: 290 FRLSTTQ-IYTNVNSKNGGDWMMEI 313
              + T+ IY +V  K   D+  +I
Sbjct: 365 ADTNITEKIYMHVTKKARQDFEAKI 389


>gi|90961706|ref|YP_535622.1| Phage integrase [Lactobacillus salivarius UCC118]
 gi|90820900|gb|ABD99539.1| Phage integrase [Lactobacillus salivarius UCC118]
 gi|300214507|gb|ADJ78923.1| Phage integrase [Lactobacillus salivarius CECT 5713]
          Length = 373

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 60/308 (19%), Positives = 110/308 (35%), Gaps = 27/308 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           S+ T  +Y+         L            I ++     R FI++   +     ++ + 
Sbjct: 78  SERTKLTYKNTFNVLKKHLGGI--------PIEEMDRRLYRKFIAEF-GKDHAKSTVSKF 128

Query: 92  LSGIKSFLKYLKKRKITTESNILN---MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            S   + +K        T+  I     + N KK+  +   LN ++   L + +      +
Sbjct: 129 NSLYHACVKDAMYDGDMTKDFIAGTDIVYNRKKTRKI-DYLNIEETKKLTNYL-----TD 182

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
           T   +     ++ L    G R+ E  +LT ++I      +         +  P      K
Sbjct: 183 TLNHNFTAKYMILLAIATGARLGEMQALTWKDINFHTIDINKSWNETTKKFQPTKNESSK 242

Query: 209 AILEYYDL---CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHT 264
            I+           DL  N    +F              + +R   + LG+   +   H+
Sbjct: 243 RIIRVNQNTLDYLQDLKQNNHDMVFINQYNTIPTSSAVNKTLRMCLKELGIDKPSFHFHS 302

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK---NGGDWMMEIYDQTHPS 320
           LRH+   +LLS   DL  I   LGH  +STT ++Y+ +  +      + +  I D+    
Sbjct: 303 LRHTHVAYLLSENIDLYIISKRLGHSDISTTSRVYSYLIDEYKNRADNKIENIVDKLFDD 362

Query: 321 ITQKDKKN 328
            T  DKKN
Sbjct: 363 -TVDDKKN 369


>gi|89147612|gb|ABD62665.1| integrase [uncultured bacterium]
          Length = 163

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 47/91 (51%)

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            E+     F        P     R   +N    Q  ++   R   +  + + HTLRHSFA
Sbjct: 72  REWAWQYFFPAERRSIDPRTGIERRHHVNEKNLQNAVKHAVRKARINKAASCHTLRHSFA 131

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           THLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 132 THLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|302338977|ref|YP_003804183.1| integrase family protein [Spirochaeta smaragdinae DSM 11293]
 gi|301636162|gb|ADK81589.1| integrase family protein [Spirochaeta smaragdinae DSM 11293]
          Length = 420

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 92/254 (36%), Gaps = 22/254 (8%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
            +I    + +L+  +I  F    R    G R++  ++  I++ +     R        + 
Sbjct: 128 HRIAEFRMDELTPGDIEDFKKDLRRSGTGTRTINLTVGAIRTAINEGLHRGDIKNDPTVG 187

Query: 116 MRNLKKSNSLPRALNEKQALTLV-----------DNVLLHTSHETKWIDARNSAILYLLY 164
           + ++K         + ++   +            D     +    K +      +  L++
Sbjct: 188 VHSIKSDEEERGIFSIEEIRKMFSFPGGLRLWGYDTGYHGSPSGEKVLPIIPYTLALLMF 247

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
             G R S  L L  +++  D  T R+  K    R +P++    KA+ E   L    L++ 
Sbjct: 248 ATGERPSAILRLNWEDVDSDMITFRV-TKAAGARSIPIVTMATKALRE---LSDSMLHVA 303

Query: 225 IQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLP------LSTTAHTLRHSFATHLLSNG 277
              P+F      + L    F +    +   L LP         T ++L+ S  THL+  G
Sbjct: 304 PADPVFCHDDTGQRLTYAFFPKRFAHMMATLDLPTNDADGRKRTPYSLKSSLITHLIDGG 363

Query: 278 GDLRSIQSILGHFR 291
            D   ++  +GH  
Sbjct: 364 ADPILVREYVGHSH 377


>gi|154484436|ref|ZP_02026884.1| hypothetical protein EUBVEN_02149 [Eubacterium ventriosum ATCC
           27560]
 gi|149734913|gb|EDM50830.1| hypothetical protein EUBVEN_02149 [Eubacterium ventriosum ATCC
           27560]
          Length = 426

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 54/332 (16%), Positives = 109/332 (32%), Gaps = 63/332 (18%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + + ++ +  L + T  +Y+            Y    I  + I  + Y++I  F     T
Sbjct: 90  FERYMDTKYNLRENTKVNYKY-------MYDNYVRNTIGKRLIADIKYSDIVYFYKSLIT 142

Query: 81  Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-RNLKKS----NSLPRALNEKQA 134
           +  +   ++    + I        +  +  ++    +  ++KK       +  AL  +Q 
Sbjct: 143 EKGLELNTVDTIHTVIHPVFSMAVRDDVIRKNPASGVLADIKKESGKNKGIRHALTIEQ- 201

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-- 192
             +    ++       WI      I  +L G G R+ E + L  +++   Q  + I    
Sbjct: 202 QRVFMKYMIEEEQFNHWIP-----IFTILLGTGCRVGEFIGLRWEDVDFKQKVISINHSI 256

Query: 193 ---------------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---- 227
                                    IR +P+   V       Y     +      +    
Sbjct: 257 AYVCYGKEDGRKSHYAISLPKTEAGIRYIPMTDEVYDVFKAEYYRQQENGFSQFSIEGMS 316

Query: 228 -PLFRGIRGKPLNPGVFQRYIRQLRRYLG---------------LPLSTTAHTLRHSFAT 271
             +F    G+  N     + ++++                    +    T H LRH+FAT
Sbjct: 317 GFIFTNRCGRIYNQQTLNKGLKRISENYNQKELIDAKKQKREPIILPHFTCHQLRHTFAT 376

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVN 302
            L  +  +L++IQ I+GH  + TT  IY    
Sbjct: 377 RLCESTSNLKAIQDIMGHANIETTMDIYAEAT 408


>gi|86739805|ref|YP_480205.1| phage integrase [Frankia sp. CcI3]
 gi|86566667|gb|ABD10476.1| phage integrase [Frankia sp. CcI3]
          Length = 242

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 69/200 (34%), Gaps = 9/200 (4%)

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
             +L   +    S +  M   K    +   L   Q   LV            +   R+ A
Sbjct: 21  FLWLLAEEELDASPMERMEPPKIGERVKPLLVLDQLSALV-----AVCKGKDFTSRRDEA 75

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           ++ +    G R SE   LT  ++   +  L + GKGD+ R + +      ++  Y     
Sbjct: 76  LVRVFADSGGRRSEVAGLTVADVDLGRKRLLVTGKGDRQRHIAIGAQTALSLNRYLRRGH 135

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
                     L+   RG  + P    + +R+  R  G+      H  RH+ A   L  GG
Sbjct: 136 HRHA--TLPALWLAGRGTAMTPSGVYQVVRRRGREAGID--VHPHLFRHALADAWLFAGG 191

Query: 279 DLRSIQSILGHFRLSTTQIY 298
             +++   +G       + Y
Sbjct: 192 GEQTLADHMGWSTTQMVRRY 211


>gi|77410914|ref|ZP_00787270.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae CJB111]
 gi|77162969|gb|EAO73924.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae CJB111]
          Length = 384

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 49/312 (15%), Positives = 105/312 (33%), Gaps = 44/312 (14%)

Query: 37  QSYECDTR-----QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           Q+Y+         + L     +    +    I ++S  + + FI+++       +++K+ 
Sbjct: 79  QAYQDTVEPTTASRTLDMFRLHILPVMGDLPISKISPLDCQNFITEKAK---TFKNIKQI 135

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQALTLVDNVLLHTSHETK 150
            S       +  K K+   + +  +   K+  + +      ++    +  VL    ++  
Sbjct: 136 KSYTGKIFDFAIKMKLLKHNPMAEIIMPKRKKTQIENYWTVQELKEFLAIVLQEEPYK-- 193

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK-------------- 196
                + A+  LL   GLR  E  +L   +I     TL +     +              
Sbjct: 194 -----HYALFRLLAYSGLRKGELYALKWADIDFQSETLSVNKSLGRLDGQAIEKGTKNDF 248

Query: 197 -IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-----------FRGIRGKPLNPGVFQ 244
            +R + L       + E+   C  +       PL            R    +PL+     
Sbjct: 249 SVRKIKLDSETISILQEWKANCQKEKAQLAVAPLSIKQDFIFTYCTRSGSVEPLHADYIN 308

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
             + ++ +  GL    + H  RH+ AT ++  G D  +    LGH     T   Y++  +
Sbjct: 309 NVLSRIIKKHGL-KKISPHGFRHTHATLMIEIGVDPVNTAKRLGHASSQMTLDTYSHSTA 367

Query: 304 KNGGDWMMEIYD 315
                 + +  D
Sbjct: 368 NGEDRSIKQFAD 379


>gi|308274017|emb|CBX30616.1| hypothetical protein N47_E41280 [uncultured Desulfobacterium sp.]
          Length = 165

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 39/118 (33%), Positives = 58/118 (49%)

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           I+G G       L    R A  E+     F        P     R   ++     + I++
Sbjct: 36  IRGYGMVFLPDALERKYRNANKEWGWQYIFPSKTLSVDPRSGIKRRHHIHLDSLNKAIKR 95

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
             +  G+  + ++H  RHSFATHLL +G D+R+IQ +LGH  +STT IYT+V +K G 
Sbjct: 96  AVQISGITKNVSSHAFRHSFATHLLEDGYDIRTIQELLGHKDVSTTMIYTHVLNKGGR 153


>gi|153838484|ref|ZP_01991151.1| integrase [Vibrio parahaemolyticus AQ3810]
 gi|149748107|gb|EDM58966.1| integrase [Vibrio parahaemolyticus AQ3810]
          Length = 392

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 37/297 (12%), Positives = 94/297 (31%), Gaps = 20/297 (6%)

Query: 20  NWLQNLEIERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +++   + +  + + T    ++          L +  +  ++   + +      + +++ 
Sbjct: 94  SFIDYFQRQIDIKEQTTSTSNHSIWLSARKHLLFYCGKHDLSFDELDKDWLDGFKYYLTN 153

Query: 78  RRTQK----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
               K    +   +     + +++ +    +  I  ++ +  + ++K   +    L   +
Sbjct: 154 EAKTKSDTALSHNTQSSYFNKVRAAINEAHREGIIRDNPLSQVTSIKAKTTKRVYLTLDE 213

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L           T+                G+R  +   LT   +    +  RI   
Sbjct: 214 VNAL---------AHTECRYPVLKRAFLFSCATGMRWCDIHRLTWSEVETFNNHKRI--- 261

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
                   L     K++         +  L         +             + +    
Sbjct: 262 --IFDQAKLSQGDAKSLQYLDIPKSAESLLGSPKASHERVFKGLKYSSYINVELLRWALA 319

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            G+    T H  RH+FA   LS G D+ ++  +LGH  L TT+IY ++  +   + M
Sbjct: 320 AGISKHVTFHAGRHTFAVIQLSRGIDIYAVSKLLGHSELKTTEIYADIIEQRRMEAM 376


>gi|291526844|emb|CBK92430.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 431

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 53/349 (15%), Positives = 117/349 (33%), Gaps = 76/349 (21%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR----------RT 80
           LS  T+++Y    R          +  I  + ++ ++   ++AF+               
Sbjct: 82  LSNGTVENYLGAIRC-------IKKHPIAERKLKTVTAEHLQAFLDLLTFGGEFPDGKVR 134

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           +      +    + ++   ++    +++ T + +  ++  K++  +    ++ +    + 
Sbjct: 135 KGYSKDYIHSFSAVLQQAFRFAVFPKQLITFNPMQYIKLKKQAEDV-DLFSDDEVEEGIQ 193

Query: 140 ----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG--- 192
                         K  +      + + Y  GLRI E   LT Q+I  ++  L I+    
Sbjct: 194 PISHEDYERLIEYLKVKNPPAILPIQIAYYAGLRIGEVCGLTWQDINLEEQCLTIKRSIR 253

Query: 193 -------------KGDKIRIVPLLPSVRKAI-----------LEYYDLCPFDLNLNIQLP 228
                        K  K+RIV    ++ + +           ++Y +L   +     Q  
Sbjct: 254 YDGTKHKNIIGPTKRKKVRIVDFGDTLTEILKTARKKQLKSRMQYGELYHRNFYKEAQDK 313

Query: 229 LFRGIRGKPLN-------------------------PGVFQRYIRQLRRYLGLPLSTTAH 263
                    L+                         P       R + + L    +   H
Sbjct: 314 NRVYYEYYHLDGTEEIPVDYKEISFVCLRPDGCLELPSTLSIACRSVAKRLDGFENFHFH 373

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMM 311
            LRH++ ++LLSNG   + +Q +LGH  +STT  +Y +   K   +   
Sbjct: 374 QLRHTYTSNLLSNGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRNSAR 422


>gi|89147436|gb|ABD62578.1| integrase [uncultured bacterium]
          Length = 163

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 43/124 (34%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
             N    +   R+       R  P       A +E+     F        P    I    
Sbjct: 45  LHNNDLSEGYGRVYLPFALDRKYPG------AGIEFGWQYCFPSVNRSSSPRTGLITRHH 98

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
           L+     R IR   R +GL    T+HT+RHSFATHLL NG D+R++Q +LGH  +STT I
Sbjct: 99  LHEKNISRAIRNASRKIGLFKRVTSHTMRHSFATHLLENGYDIRTVQELLGHKDVSTTMI 158

Query: 298 YTNV 301
           YT+V
Sbjct: 159 YTHV 162


>gi|323970608|gb|EGB65867.1| phage integrase [Escherichia coli TA007]
          Length = 366

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 66/332 (19%), Positives = 129/332 (38%), Gaps = 48/332 (14%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+ + + +I   ELL   + +L     E+ L   T  SY    R F  FL          
Sbjct: 1   MKKD-VEKITWEELL--FEYFL-----EKNLKPDTEHSYRKVVRLFDKFLG-------GD 45

Query: 61  QTIRQLSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT--TESNILNMR 117
                ++  +I+ +     + Q     +    +S ++  L    K+K    TE+ +    
Sbjct: 46  SWPGDVTPRDIQRWRRHMLKDQGRSVNTWNNRVSHLRPLLALGIKKKWLPQTENPLDGTS 105

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS------------AILYLLYG 165
               S    + L +K+ + +   V      E   +   +              +L  L  
Sbjct: 106 VPGASKQ-KKTLTDKEMVRIYRTVQAFAEAEANKMVICDRRRNAMYPAWYWLIVLDTLRF 164

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV--RKAILEYYDLCPFDLNL 223
            G+R ++   +  ++I +D++ + +Q +G K R    +P V   +  L++   C      
Sbjct: 165 TGMRFNQLKHIRLKDIHEDEAVITLQLEGSKTRREWRVPIVESLRLSLKHLIECARVNGA 224

Query: 224 NIQLPLF-RGIRGKPLNPGVFQR-----------YIRQLRRYLGLPLSTTAHTLRHSFAT 271
           +    LF   +  +  +PG +Q            + R+L R  G     ++H  RH+ AT
Sbjct: 225 SDNDYLFDVCLYSEHYSPGKYQYCAKRAHQSVKSFFRRLSRECG--FFVSSHRFRHTLAT 282

Query: 272 HLLSN-GGDLRSIQSILGHFRLSTTQIYTNVN 302
            L++    +L  ++SILGH  ++TT  Y + +
Sbjct: 283 KLMAAPERNLHMVKSILGHRSVATTMEYIDFS 314


>gi|212702760|ref|ZP_03310888.1| hypothetical protein DESPIG_00788 [Desulfovibrio piger ATCC 29098]
 gi|212673817|gb|EEB34300.1| hypothetical protein DESPIG_00788 [Desulfovibrio piger ATCC 29098]
          Length = 394

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 51/296 (17%), Positives = 107/296 (36%), Gaps = 32/296 (10%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           LL   + +L +  + R +S++TL   +   +    +       +  +  +  L+ +    
Sbjct: 69  LLAWGEAYLDH--VGRTMSRITLTEKQTVMQALFGYC-----REAGLTGVEDLTRSTWTL 121

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI----TTESNILNMRNLKKSNSLPRAL 129
           F++K  +++ G R        + +   +               +  +R       +    
Sbjct: 122 FLTKVASER-GPRRANVYRKNLLAAWNWAVDSGFPGFPQAHCPLERIRPFPVEAGVRYVP 180

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
            E+  + ++                ++  +L   Y  G R  E   L   ++  D  ++R
Sbjct: 181 PEEDVIKVLQQ-----------AHGQDLVMLLTYYYTGARRGEVFRLLWSDVNFDSGSIR 229

Query: 190 IQGKGDKI-----RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           +     +      R VP+ P + KA+  +  + P  ++         G  G+P       
Sbjct: 230 LVDHKGRDGSSRARWVPMHPELAKALRWWQAVRPCVVDNVFMQEHCDGTLGEPFQQRS-- 287

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           + + +L R  G+      H LRH  A    + GG L   Q+++GH R +TT IY  
Sbjct: 288 KLMPRLCRKAGV-KPFGFHALRHKAAAITFTAGG-LAVAQTLMGHSRATTTDIYVR 341


>gi|119854946|ref|YP_935551.1| phage integrase family protein [Mycobacterium sp. KMS]
 gi|119697664|gb|ABL94736.1| phage integrase family protein [Mycobacterium sp. KMS]
          Length = 360

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 64/301 (21%), Positives = 104/301 (34%), Gaps = 44/301 (14%)

Query: 42  DTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY 101
           D  Q   +             + Q+       ++ K         +       +  F  Y
Sbjct: 54  DLEQIREWFG---------APLWQMQPRHADEYLGKVLRNS-APATRHGKAGTLSLFFDY 103

Query: 102 LKKR---------KITTESNILNMRNLKKSN--SLPRALNEKQALTLVDNVLLHTSHETK 150
           L+ R          I  E  +  M         S+    +E +  TL            K
Sbjct: 104 LELRHKAEIYNLTGIVVECPVDEMNRPASGPAASIRIPPSEAEINTLFAGWRNDLVQCRK 163

Query: 151 W-IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQ------GKGDKIRIV 200
           +   AR+ A   L+   GLRI+E   L   +I  +      L ++      G+G K R+V
Sbjct: 164 FAPMARSYAAAQLMMRIGLRINECCYLDLDDIRWELGRFGKLHVRHGKGSRGRGPKQRVV 223

Query: 201 PLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKP------LNPGVFQRYIRQLR 251
           PL+    + +  Y         D       PLF   R  P      ++    +  + Q  
Sbjct: 224 PLINGADRTLRWYVEDVWGHFGDGWDQPGTPLFPSERHHPDGSHIRVSREPLRAALSQAV 283

Query: 252 RYLGLPL---STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
               LP      T H LRH  A+ +  +G DL +IQ +LGH  ++TT  Y +V+ ++  D
Sbjct: 284 ER-HLPQWKGRLTPHVLRHYCASEVYRSGMDLVAIQELLGHQWVATTMRYVHVHREHIED 342

Query: 309 W 309
            
Sbjct: 343 A 343


>gi|164688240|ref|ZP_02212268.1| hypothetical protein CLOBAR_01885 [Clostridium bartlettii DSM
           16795]
 gi|164602653|gb|EDQ96118.1| hypothetical protein CLOBAR_01885 [Clostridium bartlettii DSM
           16795]
          Length = 370

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 116/330 (35%), Gaps = 40/330 (12%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
            ++L      +L K   ++L+  + +  LS   + +Y C  R        Y    +    
Sbjct: 54  NDDLVAPNDMKLEKYLMDFLE--KYKPNLS---ITTYNCYIR----ICKKYINPMLGNIK 104

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           +  L    I+ ++       +  +++K  ++ +   LK   K K+     +  +   K  
Sbjct: 105 LNDLKPIHIQNYVDDL-VGILSPQTIKIHINILNLALKRAYKLKLVKYDIVDCIEVPKNK 163

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
                  ++K    L++     T   T      N AI     G GLRISE L L+  +I 
Sbjct: 164 KFKSEVYDQKDIAKLLE-----TIKNTDLELPINLAI-----GLGLRISEVLGLSWSDID 213

Query: 183 DDQSTLRIQG---------------KGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLN 224
             ++T+ I+                     R +     V   + +Y      D     + 
Sbjct: 214 FTENTITIEKITARDSGKVILKEPKTDTSKRTISAPKEVMAMLKDYKRKYLQDKLQGKIK 273

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
               LF      P+   V  +   +  +   L      H LRHS  T L++    ++ I 
Sbjct: 274 DCNLLFLDKNENPIAEDVLSKKFSRFLKKHNL-KHIRFHDLRHSHVTLLINAKVPIKVIS 332

Query: 285 SILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
             +GH  ++TT  IY++   +   +   +I
Sbjct: 333 ERVGHSNVNTTLNIYSHTLKEMDQEASEKI 362


>gi|326330366|ref|ZP_08196676.1| putative phage integrase [Nocardioidaceae bacterium Broad-1]
 gi|325951903|gb|EGD43933.1| putative phage integrase [Nocardioidaceae bacterium Broad-1]
          Length = 382

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 58/320 (18%), Positives = 110/320 (34%), Gaps = 44/320 (13%)

Query: 12  FELLKERQNWLQNLE--IERG------LSKLTLQSYECDTRQ-----------FLIFLAF 52
           F+   E Q+W+      + RG      L K T ++Y    R            F I L  
Sbjct: 40  FDRKTEGQDWIDEQTAGLVRGDWVNPELGKQTFKAYAEAWRARQVHAESTRTTFEIALNA 99

Query: 53  YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
           +   KI    I  +   +++  ++K  +      ++      +   +K   K ++   S 
Sbjct: 100 HIYPKIGDWRIDSIRQADVQELVAK-WSATAAPTTVHLRYGVLAIVMKAAAKERVLAGSP 158

Query: 113 ILNMRNLKK-SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
               R  +    S    +       L           ++ I  R   ++ +L G G+R  
Sbjct: 159 CEGTRLPRLDPKSALVPITTDVVKEL-----------SEMIYPRYKNLITVLAGTGMRRG 207

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS---------VRKAILEYYDLCPFDLN 222
           E L LT   +  D +T+R+  +          P          V   +LE  +       
Sbjct: 208 EILGLTVDRVSTDFNTIRVDRQLRTTEPTWKPPKTPSSVRTMAVPDIVLEAIEDQKKTFG 267

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
           ++    +F    G P+             +   +    T H LRH FA+  +  G  +++
Sbjct: 268 IHESGLIFTNSSGNPIGKSTLWMAWNTAAKK--VKTDATPHDLRHYFASMHIRAGTSIKA 325

Query: 283 IQSILGHFRLSTT-QIYTNV 301
           +Q++LGH   + T   Y ++
Sbjct: 326 LQALLGHKNAAETWDTYGHL 345


>gi|257090583|ref|ZP_05584944.1| phage integrase [Enterococcus faecalis CH188]
 gi|294619912|ref|ZP_06699288.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1679]
 gi|256999395|gb|EEU85915.1| phage integrase [Enterococcus faecalis CH188]
 gi|291593849|gb|EFF25347.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1679]
          Length = 380

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 79/232 (34%), Gaps = 33/232 (14%)

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSN--SLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
             L+Y    +    + +      +K       +  ++++   L+D           + + 
Sbjct: 140 QILRYGVAMQYIDNNPMEKTLLPRKKEYEKNRKFYSKEELNDLLDAF-------KDFGNM 192

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------------GDKIR 198
           +  A   LL   G+R SE L+L  ++I      L +                       R
Sbjct: 193 KQYAFFRLLAYTGMRKSEVLALQWKDIDTFNKELHVNKTLAVDEFGNVIIQSPKTRASRR 252

Query: 199 IVPLLPSVRKAILEYYDLCPFDL------NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           ++ L       +  +      +         + +  +F  ++     P     ++R + +
Sbjct: 253 VISLDTETLSILNNWKLQQKEEYLKLGYNTSSKEQHVFTTVKNTLYIPNTVNDWLRYILK 312

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
              LP   T H  RH+ A+ LL  G  ++ +Q  LGH     T  IY ++ +
Sbjct: 313 KYNLPR-ITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLDIYAHITN 363


>gi|325298175|ref|YP_004258092.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317728|gb|ADY35619.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 411

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 59/295 (20%), Positives = 106/295 (35%), Gaps = 32/295 (10%)

Query: 33  KLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKR 90
             T+  Y+         +  FY +E IT     +L+   I  F    RT+ K+   +L +
Sbjct: 130 PSTISRYDNCYESLKTVVKEFYKKEDITFY---ELNGEFIDTFEMHLRTERKLSQNTLTK 186

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRN--LKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            +S  +  L   +         ++  R    KK  + P  L   +   +++         
Sbjct: 187 YMSCFRKVLGIARDNGWLNFDPLVGKRKRLFKKEETCPTFLTLDELQRIME-----KEFS 241

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQG--------KGDKIRI 199
           T  ++      L+  Y  GL   +  +L P +   D+   L I          K      
Sbjct: 242 TARLNHVKDFFLFCCY-TGLSYIDVSTLRPIHLYRDNNGKLWIHKSRVKITTNKETCTSN 300

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           VPLLP     + +Y      D       P       + +N      Y++++     +   
Sbjct: 301 VPLLPPAIAILEKYKGWNEKD----PDAPCLPIPSNQKMNE-----YLKEIATLCDIKKR 351

Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            T H  RH+FAT + L+N   ++++  +LGH     TQ Y  V   +  + M  +
Sbjct: 352 LTVHVSRHTFATTVTLANHVAIQNVSKMLGHSSTRMTQHYARVLDNSIMEDMKGV 406


>gi|294795094|ref|ZP_06760229.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Veillonella sp. 3_1_44]
 gi|294454456|gb|EFG22830.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Veillonella sp. 3_1_44]
          Length = 403

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 55/312 (17%), Positives = 110/312 (35%), Gaps = 35/312 (11%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF----ISKRRTQKIGDRSL 88
             T Q Y+   R  L  L    E KIT  T +Q+  T +  +    +  ++   I   ++
Sbjct: 91  PKTFQKYDSTLR--LYILPLLGEIKITSITPQQVQ-TVLNNWSNGTLKGKKGHIISSSTI 147

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
           + +   +    +Y     +  ++ I   +  +   +    L+  +   L   +    S+ 
Sbjct: 148 RCTRRYLSELFEYAVNIGLLLKNPIKLTKPPRLITTEIHTLSLDEIHQLTSIMKQQVSNN 207

Query: 149 TKWIDARNS----AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------------- 191
                  N       + +  G G+R+ E   L    +      + ++             
Sbjct: 208 ISSPYRINYYASYIAMKIALGTGMRLGEVFGLCWDCVDLIHGHISVRRTIQTGTKGQIFQ 267

Query: 192 --GKGDKIRIVPLLPSVRKAILEY------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
                   R +P+   ++  +  Y      Y     D   +    +  G  GK L+   F
Sbjct: 268 DTKTKTSRRCIPISQELQSELTTYKEFQSNYAKELGDKWTDSYGVVISGTFGKILSTSNF 327

Query: 244 Q-RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNV 301
           + RY   + + L L    T H LRH+ AT LLS   + + +Q  LGH  ++ T   Y+++
Sbjct: 328 KSRYFIPILKQLNLE-HITFHDLRHTHATLLLSQKINPKIVQERLGHSTITLTLDTYSHL 386

Query: 302 NSKNGGDWMMEI 313
                 + +  +
Sbjct: 387 VPDIQKEAVKAL 398


>gi|16077547|ref|NP_388361.1| phage integrase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221308305|ref|ZP_03590152.1| hypothetical protein Bsubs1_02718 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312627|ref|ZP_03594432.1| hypothetical protein BsubsN3_02694 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317550|ref|ZP_03598844.1| hypothetical protein BsubsJ_02653 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321826|ref|ZP_03603120.1| hypothetical protein BsubsS_02724 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81556749|sp|P96629|INT_BACSU RecName: Full=ICEBs1 integrase
 gi|1881291|dbj|BAA19318.1| ydcL [Bacillus subtilis]
 gi|2632780|emb|CAB12287.1| putative phage integrase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 368

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 93/278 (33%), Gaps = 37/278 (13%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            I+++++ EI  F        + ++S+   ++ +          +I   +   N++ L  
Sbjct: 102 DIQKITHREITDFRKHLMETGLSNKSVNNIMTSLSKIFDTAVHEEILKRNPCDNVKRLPL 161

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG----CGLRISEALSLT 177
           +    +    ++    +             +  ++  +    Y      GLR  E L+L 
Sbjct: 162 TRKKMKFWRPEEFKKFIS------------LIPQDQLLFKTFYTVAFLTGLRCGEMLALQ 209

Query: 178 PQNIM---------------DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
            ++I                D Q  +      + IR V +   + K +  + +      N
Sbjct: 210 WKDIDKILLEIDVHKSCTWLDGQFVVTTPKTKNSIRRVSINKKLLKLLERWKEAQEELFN 269

Query: 223 ----LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
                +         +  P    +F R I+   +   L      H  RHS    L+  G 
Sbjct: 270 ELGIRHSHDTYIFQYKDTPSRKDIFSRKIKYFCKDSDLT-PIRLHDFRHSHVALLIHQGE 328

Query: 279 DLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYD 315
           D  +I+  LGH  + TT  +Y ++      +   ++ D
Sbjct: 329 DYITIKERLGHGSVKTTIDVYGHLYPNKQKEMADKLDD 366


>gi|229495696|ref|ZP_04389424.1| integrase [Porphyromonas endodontalis ATCC 35406]
 gi|229317270|gb|EEN83175.1| integrase [Porphyromonas endodontalis ATCC 35406]
          Length = 411

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 50/310 (16%), Positives = 114/310 (36%), Gaps = 30/310 (9%)

Query: 14  LLKERQNWLQNLEIERGLS-KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
             +  +++ +  +++ GL    T   Y    +    F+      +++   +++L+   I 
Sbjct: 113 FAQHNEDFFK--QVDAGLRCPSTYNKYCTVYKHLEEFIKTRY--RVSDIALKELTPAFIT 168

Query: 73  AFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
            F    RT+K   + ++   +  ++  +   +          ++  ++   ++    L +
Sbjct: 169 DFDIFLRTEKQCCNNTVWIYMMPLRRMITIAQNHGWIVRDPFVDY-SISAESTDRDYLTK 227

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQST 187
            +   L+D      S E          +       GL  ++  +LT  N           
Sbjct: 228 DEIRQLLDLKFRRKSMELA------RDLYVFCCFTGLSFTDMKNLTKDNLQTSFDGKLWI 281

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           +  + K      + LL   ++ I +Y  +   +L L +                   + I
Sbjct: 282 MTKRQKTGVESNIMLLDIPKQIIDKYDGMAKDNLLLPVP------------TYITACKNI 329

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +++    G+    T HT RH+ AT   L+NG  + ++  +LGH  + TTQIY  +  +  
Sbjct: 330 KKIIGLCGIEKEITWHTSRHTMATEICLTNGVPIETLSKMLGHTNIRTTQIYAKITHEKE 389

Query: 307 GDWMMEIYDQ 316
              M  + D+
Sbjct: 390 SRDMAALSDK 399


>gi|33152039|ref|NP_873392.1| integrase/recombinase [Haemophilus ducreyi 35000HP]
 gi|33148261|gb|AAP95781.1| integrase/recombinase [Haemophilus ducreyi 35000HP]
          Length = 284

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 105/272 (38%), Gaps = 24/272 (8%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96
           +SYE   RQ         ++   ++    L+ T +  +      + I   +    +  +K
Sbjct: 6   KSYEKAIRQL--------KKNCKVEYPDDLTVTSLLEWRKNVVDKSISPVTWNSYIRQLK 57

Query: 97  SFLKYLKKRKIT--TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS-HETKWID 153
           +  K+  + +I    ++    + ++K+     +  + +Q   L   +  + +  E     
Sbjct: 58  TIFKFGIEYEILSLEKNPFNKL-SVKEGKHRKKIYSPEQLQKLSCGIQENANIPEYLRPT 116

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP-------LLPSV 206
                I+  L    +R ++ + L  +++  ++  + I  + +K            L P +
Sbjct: 117 WFVQTIIMTLRCTAIRRTQLIKLKIKDVDLEKRIIYIPPEINKNHDYHTLPISNALYPYL 176

Query: 207 RKAILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
              + +  +L     N    L LF      RGKP+         + + +Y G+   ++ H
Sbjct: 177 TNLLNKLQELKQSTDNQLFNLNLFSRAVKRRGKPMTADQVSYLFKVISKYTGIT--SSPH 234

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             RH+ AT+L+ N  +L   + +LGH  +  T
Sbjct: 235 RFRHTAATNLMRNPENLYITKQLLGHKDIRVT 266


>gi|332829912|gb|EGK02540.1| hypothetical protein HMPREF9455_00790 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 334

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 113/282 (40%), Gaps = 18/282 (6%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSL 92
            T+ +Y      F+  L+ Y  ++    ++ +L+   + ++I     +     +++    
Sbjct: 31  HTVANYVS----FINKLSLYLGKQSESFSLYELNKGWVESYIEWLHERHPDKPQTVDFYF 86

Query: 93  SGIKSFLKYLKKRKITTE----SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            G++S      K K   +    +  + +  +KK  +  RAL+ K    L+ N  L +S  
Sbjct: 87  RGLRSLFNATIKTKEYADLNIINPFIGL-YVKKGLTPKRALSVKMLSKLL-NPELGSSLT 144

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
               ++ +  ++ L Y  G+   +  +L    I D       + K  +   + +    ++
Sbjct: 145 VSQRESLDILLVSL-YCRGMVFHDIYNLRWDMINDFWQIEYRRSKTGQFICLSVPKEGQE 203

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            +L Y       +   ++    + +  +        R+   + + L LP   T + +RHS
Sbjct: 204 IMLRYKKNNNLYVFPFLREKKNKTVLCEKSALRRINRHALIIGKTLNLPCKLTTYVMRHS 263

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIY------TNVNSK 304
           +AT +L  G  +  I   +GH  + TTQIY      T V+ +
Sbjct: 264 WATLMLEAGKSVEIISQCMGHTSIRTTQIYLSSISITKVDRE 305


>gi|325678336|ref|ZP_08157958.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324109957|gb|EGC04151.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 377

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 53/308 (17%), Positives = 96/308 (31%), Gaps = 51/308 (16%)

Query: 19  QNWLQNLEIERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           + WL+        +KL L+  SYE      +  L       I    + ++    I+ F+ 
Sbjct: 74  EEWLET------YAKLNLRNTSYER-----MKQLRNRVYPAIGHMRMDKIKVRHIQQFVY 122

Query: 77  KRRTQK--------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
                         +  +++   LS I     Y  K ++ T++    +   K        
Sbjct: 123 DLAVNGKSFKNGKPLSRKTVVHHLSFISDVFSYAVKMELLTDNPCRRVTVPKGEKKEKEI 182

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
              +Q   L  N+L            +      L    G R  E L L  ++I  D   +
Sbjct: 183 YTLEQVEQLF-NLLEDAP-------LKYRTFFTLAIYSGFRRGELLGLEWKDIDWDNCVI 234

Query: 189 RIQ----------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDL-----NLNIQL 227
            ++                      R +     V   +  +      +            
Sbjct: 235 SVKRTSNYTAEKGIYTDTTKTKKSQRSLKFPMVVMDLLRAFKAEQDEERERIGDKWQDYD 294

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
            LF    G+P+N      +  +       P     H+LRH +A+ L++ G D  ++   L
Sbjct: 295 RLFVKWDGRPMNNNTPYFWFNEFCEKNNFPFR-DIHSLRHFYASALINEGVDAAAVSGAL 353

Query: 288 GHFRLSTT 295
           GH  +STT
Sbjct: 354 GHSVISTT 361


>gi|289423466|ref|ZP_06425268.1| phage integrase family protein [Peptostreptococcus anaerobius
           653-L]
 gi|289156100|gb|EFD04763.1| phage integrase family protein [Peptostreptococcus anaerobius
           653-L]
          Length = 311

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 88/229 (38%), Gaps = 24/229 (10%)

Query: 95  IKSFLKYLKKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           +KS +       +        +    +  +      + LN+ +   L+D + L  S    
Sbjct: 83  LKSSILDAVDEGLIDRDPTRKVIIKGKPPRIKKQ--KYLNQYELHKLLDCLKLDESISWD 140

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----S 205
           W        + L+   G+R SEAL LTP +    +  L I    +       LP     S
Sbjct: 141 W-------FIMLVAKTGMRFSEALGLTPNDFDFSRQVLSINKTWNYKEKGGFLPTKNRSS 193

Query: 206 VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           VRK  L++  +  F     NL    P+F   +    N       +++      +P+  + 
Sbjct: 194 VRKIHLDWQTIIQFSQLLKNLPKDEPIFTINKDVVYN-STVNAILKRRCNEANIPV-VSI 251

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWM 310
           H LRH+ A+ LL  G    S+   LGH  ++TTQ  Y ++  +     +
Sbjct: 252 HGLRHTHASLLLFAGVSTASVARRLGHSSMATTQKTYLHIIHELENKDL 300


>gi|94442266|dbj|BAE93632.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 52/112 (46%)

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + G G+      L      A   +     F  N     P    ++   ++    Q+ I++
Sbjct: 50  VDGYGETTLPYALARKYPSAAKSWMWQYAFPSNQRCFAPDLGTMKRHHVHQTGVQKAIKR 109

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                 +     +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 110 AVTRCNINKRVGSHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|257870041|ref|ZP_05649694.1| phage integrase [Enterococcus gallinarum EG2]
 gi|257804205|gb|EEV33027.1| phage integrase [Enterococcus gallinarum EG2]
          Length = 383

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 82/241 (34%), Gaps = 37/241 (15%)

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPR------ALNEKQALTLVDNVLLHTSHETK 150
              +Y    ++ T + +  +   K+   + +        ++KQ +T +D           
Sbjct: 140 QIFQYAISVRLLTNNPMNGVIRPKRQMDIDQEDYAAPYYSQKQLITFLDKAKKQLPFSE- 198

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----------------GKG 194
                   +  +L   GLR  E  +L  ++I   + TL ++                   
Sbjct: 199 ------FLMFRILAFTGLRKGELHALRWKDISFGRGTLSVKQTVATADGWKLIFQTPKTR 252

Query: 195 DKIRIVPLLPSVRKAILEY------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
             +R + L     K +  +              + N +  LF     K L        + 
Sbjct: 253 KSVRELSLDDETLKLLKRWKLQQKELFFKLGIKHDNEEQLLFTSEENKVLYLDFLNHRLT 312

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGG 307
           ++ +   L    T H  RH+  + LL +G  ++ +Q  +GH  + TT  +Y +V  K   
Sbjct: 313 KILKDNNLEY-MTVHGFRHTHCSLLLESGVPIKEVQERMGHTDIKTTMNVYAHVTDKKRE 371

Query: 308 D 308
           +
Sbjct: 372 E 372


>gi|260641921|ref|ZP_05413997.2| integrase [Bacteroides finegoldii DSM 17565]
 gi|260624123|gb|EEX46994.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 396

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 98/269 (36%), Gaps = 24/269 (8%)

Query: 46  FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR 105
              F+       I    I +      + F+ K      G   +   L  +   +     R
Sbjct: 131 LRQFIESRGMRDIAFSDITEEFAESFKIFLKKELGHGNGH--VNHCLCWLNRLIYIAVDR 188

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
           ++   + I ++   KK +   + +   +   +++     T      ++      ++  + 
Sbjct: 189 EVLRANPIEDVAYEKKDSPKLKHIGRNELKLIME-----TPMPDPMMELARRTFIFSSF- 242

Query: 166 CGLRISEALSLTPQNI---MDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
            GL   +   L P++I      +  +RI+  K      +PL P   + +  Y        
Sbjct: 243 TGLAYVDTRRLHPRHIEKSSLGRRYIRIRRAKTGAEAFIPLHPVAEQILELYNT------ 296

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
             + + P+F           +    +  L   LG+  + + H  RHSF T ++++G  + 
Sbjct: 297 -TDNEKPVFPLPV-----RDILWYEVHGLGVALGMKENLSYHMARHSFGTLMMTSGIPIE 350

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           SI  ++GH  +++TQ+Y  V  +     M
Sbjct: 351 SIAKMMGHTNINSTQVYAQVTDQKISSDM 379


>gi|167951297|ref|ZP_02538371.1| Site-specific recombinase XerD [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 286

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 72/190 (37%), Gaps = 24/190 (12%)

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-------DQSTLRIQG 192
             L+       ++  R++AIL +  GCGLR+S    L   +++        ++  +R++ 
Sbjct: 7   ERLMLQPDLDTFLGVRDAAILSVFIGCGLRLSGVCRLNESDLVWAADDRGMERLIIRVRE 66

Query: 193 KGDKIRIVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGK------------ 236
           KGD  R VP     R  I  Y           +  +    LF   +              
Sbjct: 67  KGDHQRFVPAPHETRLLIRAYLGHEELARIDRMLPDGDQVLFVSTKDMKTPPHEYYGEAR 126

Query: 237 PLNPGVFQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            ++       + +     G+P      H LRH + T L  +   L  IQ+++GH    TT
Sbjct: 127 RISTRSVGEMVEKYGDQAGIPRDQCHPHALRHLYGTELTEDDVQLLKIQALMGHKDPKTT 186

Query: 296 QIYTNVNSKN 305
           + Y +V   N
Sbjct: 187 KDYVHVARAN 196


>gi|52079966|ref|YP_078757.1| lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme,
           catalytic core [Bacillus licheniformis ATCC 14580]
 gi|52785338|ref|YP_091167.1| hypothetical protein BLi01574 [Bacillus licheniformis ATCC 14580]
 gi|52003177|gb|AAU23119.1| Lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme,
           catalytic core [Bacillus licheniformis ATCC 14580]
 gi|52347840|gb|AAU40474.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 381

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 62/323 (19%), Positives = 124/323 (38%), Gaps = 44/323 (13%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTR-QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           + W ++ ++   L   T+ +Y        L +L  +         I+ ++   ++ +I++
Sbjct: 72  EKWFESKKV--RLRSSTIVNYREQLDYNILPYLGTFK--------IKDITEEVLQHYINR 121

Query: 78  RR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
               +K+   +++ +   +   LK    RK   +  IL+  NL   N + +  NE     
Sbjct: 122 LHNERKLAPATIRTAFGVVAEVLK-KASRKGAFDLAILDDVNLPPENRISKVWNESNVQA 180

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----- 191
            +D      S    +I    S I       G+R+ E L L   +I  ++  L I+     
Sbjct: 181 FLDARNRIVSLTRYFIGMVLSVI------TGMRMGEVLGLRWSDIDFEKGYLTIRQTLAK 234

Query: 192 -------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGI 233
                              R V L     + ++E+  +   +  +  +       +    
Sbjct: 235 IDDEGNYGLVPEVKTAAGFRTVHLPKFFIEYLIEHKKMVQREKEILGEDYIDYDLVVCTK 294

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
            GK ++P  ++R   +L   L LP       LRH+ AT+L+S G   + +Q  LGH  + 
Sbjct: 295 HGKWVHPNNYRRAFTRLIAQLELPK-IPPKNLRHTHATYLISIGISPKIVQERLGHAHIK 353

Query: 294 TTQ-IYTNVNSKNGGDWMMEIYD 315
           TT   Y++V      + + ++ D
Sbjct: 354 TTLGTYSHVLPSMQAELVGKLDD 376


>gi|296162521|ref|ZP_06845311.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295887229|gb|EFG67057.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 565

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 64/322 (19%), Positives = 115/322 (35%), Gaps = 39/322 (12%)

Query: 8   EIVSFELLKERQNWLQNLEIERGL---SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           +  S    KE +  L    +ER     S  T      D   +  FL F   E   +   R
Sbjct: 236 DATSRAYRKEAERLLLWANVERKRPLSSLNT-----DDAIAYRTFLRFPEPESQWVGPRR 290

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN---LKK 121
                + R F  + R       S+  +LS + +  ++L +++    +    +        
Sbjct: 291 SRQSDDWRPFFRRLR-----PSSVAYALSVLSAMFRWLVEQQYVVANPFAGVTAGNARSA 345

Query: 122 SNSLPRALNEKQAL--TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
            +   R+L + +      V + L      +     R   IL      GLR +E +     
Sbjct: 346 GHVRIRSLADDEWRFARHVASELSTVHGWSVEAAQRLCFILDFELATGLRATELVQARLG 405

Query: 180 NIMDDQS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGI 233
           +I    +    LR+ GKG +I  V + P   +A+  Y        +    N  +PL   +
Sbjct: 406 HIYFGDAADIWLRLTGKGRRIARVAMPPLAMQALQTYLQQRGLPADPRRCNRNIPLVPSL 465

Query: 234 RGKP---LNPGVFQRYIRQLRRYLGLP------------LSTTAHTLRHSFATHLLSNGG 278
                   +    +  +++  R + L                + H LRH+ AT  L+ G 
Sbjct: 466 SRDHTVSFSGTRLRAVLKRFFRLVALQIANTDSAAAHRLERASPHWLRHTHATRALARGV 525

Query: 279 DLRSIQSILGHFRLSTTQIYTN 300
           +LRS++  L H  ++TT  Y +
Sbjct: 526 ELRSVRDNLRHASIATTSQYVH 547


>gi|145225222|ref|YP_001135900.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
 gi|145217708|gb|ABP47112.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
          Length = 637

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 61/315 (19%), Positives = 109/315 (34%), Gaps = 35/315 (11%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT-EIRAFISKRRTQKIG----DRS 87
             T+ S       F  +LA       ++ ++ QL     I  FI+   T          +
Sbjct: 231 PKTVSSLATRLAHFGRYLAAADP---SLTSLNQLDRRRHIEPFITSLTTATNSVTGEPIT 287

Query: 88  LKRSLSGIKS---FLKYLKKRKITTESN---ILNMRNLKKSNSLPRALNEKQALTLVDNV 141
           +   +  I +   FL  + +           I      +    LPR L         D  
Sbjct: 288 VADRIRCIHAVGNFLAEITEWGWDDAPPRRLIFRTDLPRPPRCLPRYLPVD-----SDRK 342

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD---DQSTLRIQ-GKGDKI 197
           L     ++ +  A ++ ++     CGLRI E L L    I +     S L++  GK +  
Sbjct: 343 LTAALAKSPYRLAADALLVQ--RACGLRIGELLDLELDCIHEIPGQGSWLKVPLGKLNSE 400

Query: 198 RIVPLLPSVRKAILEYYDLC------PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           R++P+   V   +                        LF    GK L+    +  + +  
Sbjct: 401 RMIPVDDEVLTLVDRITTTRSSGRPMIHPRTGAPADFLF-THHGKRLSQNAVREELNRAA 459

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +   L    T H LRH++AT L++ G  L+++ ++LGH     +  Y ++          
Sbjct: 460 QAASLG-HITPHQLRHTYATALINAGVSLQALMALLGHVSTQMSLRYAHLFDHTVRTEYE 518

Query: 312 EIYD--QTHPSITQK 324
              D  ++H     K
Sbjct: 519 RALDLAKSHIGALPK 533


>gi|146301451|ref|YP_001196042.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146155869|gb|ABQ06723.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 289

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 71/302 (23%), Positives = 107/302 (35%), Gaps = 37/302 (12%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
            S  T+ SY      FL                ++  Y  I  ++ +  T++   +    
Sbjct: 14  YSPQTVSSYLFAINHFLKLNPKA----------KRYKYGNIVKYMEEISTRQSNSKYRVV 63

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD-------NVLL 143
            LS IK +  YL       +              L   +N  QA+ + D        +LL
Sbjct: 64  ILSAIKKYYDYLVMSGYRNDHPC---------KRLNIKVNSNQAIQVQDLFSSPELQLLL 114

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPL 202
              +  + +D RN  IL LL   GL   E + LT ++I  D  T+ I+  K    R + L
Sbjct: 115 ERENRYRHLDIRNKVILSLLIYQGLTSDEIIRLTVKDIDLDNGTVYIKASKNLNKRRMNL 174

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLST 260
           +P        Y      ++       L     GKP++       I  LR   GL      
Sbjct: 175 VPRQMILFFNYLQETRLEMLRCKTEKLIITKLGKPMSVDSIHAMIEPLR---GLFPDRKL 231

Query: 261 TAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              T+R S   + L      L   Q + GH    TT+ Y  VNS +      EI ++  P
Sbjct: 232 NPQTIRMSVICNWLNEKNISLEKAQELAGHKWPGTTEKYIKVNSSHQ----REIINRYFP 287

Query: 320 SI 321
           SI
Sbjct: 288 SI 289


>gi|240173391|ref|ZP_04752049.1| phage integrase family protein [Mycobacterium kansasii ATCC 12478]
          Length = 647

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 66/329 (20%), Positives = 122/329 (37%), Gaps = 48/329 (14%)

Query: 22  LQNLEIERG-LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           L+ + +    L   +++S   D   F+ +L  +  +   + ++R+L    I  +++  RT
Sbjct: 222 LRYIRVRAAVLRPKSVESLINDLLPFVEYLTAHHSK---LTSLRELDRACIEDYLTWNRT 278

Query: 81  QKI--------GDRSLKRSLS-----GIKSFLKYLKKRKITTESN---ILNMRNLKKSNS 124
           +            R++  +++      +++ L  +             +      K    
Sbjct: 279 RGWRGQRAAAGAGRTVSAAVAQSAVLSLRNLLDDITAWGWEEAPPRRLVFAADVPKLDQP 338

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LPRAL        V N +         I       L +L G GLR+ E L L   +I+D 
Sbjct: 339 LPRALAPD-IDAAVMNAVARLDDSFARIG------LTVLRGAGLRVGELLDLELGSIIDY 391

Query: 185 QS---TLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN------IQLPLFRGIR 234
            +    L++  GK    R+VPL  +   A+ E+         L       +   LF    
Sbjct: 392 GAAGTWLKVPLGKLATERMVPLSAATTAALDEWVTHRDAHRPLAHPRTGVLTDFLF-TQY 450

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLS------TTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           G+ L     +  +    +  GL          T H LRH++AT L + G  ++++ ++LG
Sbjct: 451 GRRLGYTRLRNGLLAAAQSSGLRGPDGGILVVTPHQLRHTWATELANAGMSMQALMALLG 510

Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           H     T  Y  + S      +   YD  
Sbjct: 511 HVTPQMTIRYATLAS----PTLRAAYDDA 535


>gi|221633310|ref|YP_002522535.1| putative site-specific recombinase, phage integrase family
           [Thermomicrobium roseum DSM 5159]
 gi|221155879|gb|ACM05006.1| putative site-specific recombinase, phage integrase family
           [Thermomicrobium roseum DSM 5159]
          Length = 326

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 32/277 (11%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP +     L   + W +    + G    T++SY  D   F        E  +  + IR+
Sbjct: 34  LPVLTPDSSLDVARFWFRRYLEQSGHPPNTVKSYSYDLAVF--------ESLVGPKPIRE 85

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKSNS 124
           +   ++  F+++ R    G  + KR L+ + +F K+L  R K+          + +    
Sbjct: 86  IDERDVATFLNESR----GRSTRKRRLTTLSTFYKFLITRAKVVEIDPTAAFYSDRIPLK 141

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD- 183
            P+ L   +   L++                    ++L+   GL   E ++L   +I   
Sbjct: 142 TPQPLFADEQARLLEAAAAEGPRT--------HLAIWLMLRLGLSRHEVIALRAAHIDWS 193

Query: 184 --DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
             +   + +  +  K R+     +  + + E Y     +             R  P+ P 
Sbjct: 194 DPEHPIVYVFAEQPKRRLRERKLAANRELTEIYHQLVEEEGPQD--------RLVPILPQ 245

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
              + + ++ +  G+    T  TLRH+FA      G 
Sbjct: 246 SLNKMVERVAKAAGIEKLVTPQTLRHTFAVEQAKRGA 282


>gi|118463716|ref|YP_881470.1| phage-related integrase [Mycobacterium avium 104]
 gi|118165003|gb|ABK65900.1| phage-related integrase [Mycobacterium avium 104]
          Length = 402

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 48/299 (16%), Positives = 107/299 (35%), Gaps = 26/299 (8%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P      + +    W++  ++ R   + T++      RQ +         +     + Q+
Sbjct: 81  PRDAKLTVQQWCDTWIEGYKVHR---EGTVREARTHIRQIVT--------EFGDTPLTQV 129

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
             ++++A+ ++ R   +    +    S +   +       +   +            +  
Sbjct: 130 RPSQVKAWTARLRADGMKASYIYALHSRLSQIMADAVHDGVLGRNPCSRRTAPPMGKAKV 189

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
                +Q   L D V  H               + L    GLR++E   L   ++   + 
Sbjct: 190 YVATTEQVWALHDAVPDHL-----------KVAVLLGAFAGLRVAEVSGLRVSDVDFIRG 238

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQ 244
            +  + +     +     S    I +   L           ++ +  G+      P + +
Sbjct: 239 VVHPKQQWSDKPLKTEGSSAPIPIPQDLALLLSASVQKYPAEMMVTNGLGTDRCGPWIIE 298

Query: 245 RYIRQLRRYL-GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301
           R IR +RR + GLP   + H LRH  A+ L++ G D++++Q+ L H    TT   Y+++
Sbjct: 299 RAIRDVRRGIDGLPEGFSFHDLRHYLASLLIARGCDVKTVQARLRHSSAKTTLDTYSHL 357


>gi|256617053|ref|ZP_05473899.1| phage integrase [Enterococcus faecalis ATCC 4200]
 gi|256853752|ref|ZP_05559117.1| phage integrase [Enterococcus faecalis T8]
 gi|256596580|gb|EEU15756.1| phage integrase [Enterococcus faecalis ATCC 4200]
 gi|256710695|gb|EEU25738.1| phage integrase [Enterococcus faecalis T8]
          Length = 380

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 79/232 (34%), Gaps = 33/232 (14%)

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSN--SLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
             L+Y    +    + +      +K       +  ++++   L+D           + + 
Sbjct: 140 QILRYGVAMQYIDNNPMEKTLLPRKKEYEKNRKFYSKEELNNLLDAF-------KDFGNM 192

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------------GDKIR 198
           +  A   LL   G+R SE L+L  ++I      L +                       R
Sbjct: 193 KQYAFFRLLAYTGMRKSEVLALQWKDIDTFNKELHVNKTLAVDEFGKVIIQSPKTRASRR 252

Query: 199 IVPLLPSVRKAILEYYDLCPFDL------NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           ++ L       +  +      +         + +  +F  ++     P     ++R + +
Sbjct: 253 VISLDTETLSILNNWKLQQKEEYLKLGYNTSSKEQHVFTTVKNTLYIPNTVNDWLRYILK 312

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
              LP   T H  RH+ A+ LL  G  ++ +Q  LGH     T  IY ++ +
Sbjct: 313 KYNLPR-ITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLDIYAHITN 363


>gi|262172770|ref|ZP_06040448.1| integrase [Vibrio mimicus MB-451]
 gi|261893846|gb|EEY39832.1| integrase [Vibrio mimicus MB-451]
          Length = 391

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 43/298 (14%), Positives = 103/298 (34%), Gaps = 22/298 (7%)

Query: 20  NWLQNLEIERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +++   + +  + + T    ++          L +  +  ++   + +      + +++ 
Sbjct: 94  SFIDYFQRQIDIKEQTTSTSNHSIWLSARKHLLFYCGKHDLSFDELDKDWLDGFKYYLTN 153

Query: 78  RRTQK----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
               K    +   +     + +++ +    +  I  ++ +  + ++K   +    L   +
Sbjct: 154 EAKTKSDTALSRNTQSSYFNKVRAAINEAHREGIIRDNPLSQVTSIKAKTTKRVYLTLDE 213

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
             TL           T+                G+R  +   LT      +  T     +
Sbjct: 214 VNTL---------AHTECRYPVLKRAFLFSCATGMRWCDIHRLTWS----EIETFNNHKR 260

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY-IRQLRR 252
               ++       +   L+Y DL  F  +L   +        K L    +    + +   
Sbjct: 261 IIFDQVKLSHGDAKS--LQYLDLPKFAESLLGPVKAAHERVFKGLKYSSYMNVELLRWSL 318

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
             G+    T H+ RH+FA   LS G D+ S+  +LGH  L TT+IY ++  +   + M
Sbjct: 319 AAGISKHVTFHSGRHTFAVIQLSRGVDIYSVSRLLGHSELKTTEIYADIIEQRRMEAM 376


>gi|94442302|dbj|BAE93650.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 53/112 (47%)

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + G G+      L      A   +     F  N     P    ++   ++    Q+ I++
Sbjct: 50  VDGYGETTLPYALARKYPSAAKSWMWQYAFPSNQRCFAPDLGTMKRHRVHQTSVQKAIKR 109

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                 + +   +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 110 AVTRCNINMRVGSHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|331699798|ref|YP_004336037.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326954487|gb|AEA28184.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
          Length = 316

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 94/264 (35%), Gaps = 40/264 (15%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRK-------------------ITTESNILNMR---- 117
           ++   R++   LS +  F  +                        +   + + +      
Sbjct: 40  RQYAARTINHQLSVLFGFYDHACAAGFGPLVNPVPAQRGRDGGRVLAHHNPMEDFVVHRR 99

Query: 118 ---NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
                K+     RA+ ++ A  L   +  H          R+ A++      G+R +E L
Sbjct: 100 ATYRQKQPKPTWRAIPDQAAEQLFGVLRCH----------RDRALISFWLSSGVRAAELL 149

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-SVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
            L   ++     T+ +  KG + R            +  Y       L     L   R  
Sbjct: 150 GLRHGDLDVGAHTITVVSKGSRAREEVPASVDSFAWLALYLAEDRPPLVEGGPLWWTRTQ 209

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRL 292
             +PL     +  ++  R    L  + T H LRH+ A  +L++    L  +Q+IL H  +
Sbjct: 210 PPRPLTYHAARAALQ--RANAVLGTNWTLHDLRHTAAQRMLADPAFTLVDVQTILRHASV 267

Query: 293 STTQIYTNVNSKNGGDWMMEIYDQ 316
           +TTQIYT    ++  + ++E Y +
Sbjct: 268 TTTQIYTQPRLEDLIEKVLEHYAR 291


>gi|210614273|ref|ZP_03290144.1| hypothetical protein CLONEX_02357 [Clostridium nexile DSM 1787]
 gi|210150757|gb|EEA81766.1| hypothetical protein CLONEX_02357 [Clostridium nexile DSM 1787]
          Length = 431

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 53/349 (15%), Positives = 118/349 (33%), Gaps = 76/349 (21%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR----------RT 80
           LS  T+++Y    R          +  I  + ++ ++   ++AF+               
Sbjct: 82  LSNGTVENYLGAIRC-------IKKHPIAERKLKTVTAEHLQAFLDLLTFGGEFPDGKVR 134

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
           +      +    + ++   ++    +++ T + +  ++  K++  +    ++ +    + 
Sbjct: 135 KGYSKDYIHSFSAVLQQAFRFAVFPKQLITFNPMQYIKLKKQAEDV-DLFSDDEVEEGIQ 193

Query: 140 ----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG--- 192
                         K  +      + + Y  GLRI E   LT Q+I  ++  L I+    
Sbjct: 194 PISHEDYERLIEYLKVKNPPAILPIQIAYYAGLRIGEVCGLTWQDINLEEQCLTIKRSIR 253

Query: 193 -------------KGDKIRIVPLLPSVRKAI-----------LEYYDLCPFDLNLNIQLP 228
                        K  K+RIV    ++ + +           ++Y +L   +    +Q  
Sbjct: 254 YDGTKHKNIIGPTKRKKVRIVDFGNTLTEILKTARKEQLKSRMQYGELYHRNFYKEVQDK 313

Query: 229 LFRGIRGKPLN-------------------------PGVFQRYIRQLRRYLGLPLSTTAH 263
                    L+                         P       R + + L    +   H
Sbjct: 314 NRVYYEYYHLDGTEEIPADYEEISFVCLRPDGCLELPSTLSIACRSVAKRLDGFENFHFH 373

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMM 311
            LRH++ ++LLSNG   + +Q +LGH  +STT  +Y +   K   +   
Sbjct: 374 QLRHTYTSNLLSNGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRNSAR 422


>gi|89147655|gb|ABD62686.1| integrase [uncultured bacterium]
          Length = 163

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 37/162 (22%)

Query: 177 TPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY--------------------- 214
             +++  D   + +  GKG + R   L   +  AI +                       
Sbjct: 1   RVKDLDFDNGCITVHDGKGGESRNSLLPTGLIAAIKQLIDRVLVIQQEDNAQGVGPSLPF 60

Query: 215 --------------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLS 259
                          +  F  +     P    +    L+  V ++ ++   +  G+    
Sbjct: 61  ALDRKYPSAYRRPAWMFIFPSSTLCNHPYSGKLCRHHLHDSVARKALKAAVQKAGILNKR 120

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|86141512|ref|ZP_01060058.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
 gi|295133678|ref|YP_003584354.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
 gi|85832071|gb|EAQ50526.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
 gi|294981693|gb|ADF52158.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
          Length = 388

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 53/307 (17%), Positives = 100/307 (32%), Gaps = 36/307 (11%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K R ++L   E ++     T  +Y+         L  Y    I+     ++    I+ F 
Sbjct: 89  KGRTSFLDFYEEKKEERYQTKGNYDNW-DAAQKHLENYCPNHIS---FNEVDIDFIKGFK 144

Query: 76  SKRRT-------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
               T       + +   +     +  K+ ++   +     E+ I  ++      S    
Sbjct: 145 KYLDTVAVTKSNKNLSQNTKHTYFNKFKAAMRAAFEEGYLKENLIAKVKGFAMGESKREY 204

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----- 183
           L   +   L                 +++ +   L   G+R S+   LT   + D     
Sbjct: 205 LTSDELKRL-------AKTPCNIQVFKDAFLFSAL--TGIRWSDIHKLTWSEVRDEGIDK 255

Query: 184 -DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
            D    RI  K  K   +  L   ++A                +  +F  +R        
Sbjct: 256 SDNEIFRIVFKQKKTEGMEYLYISKQA------RRLLGKRSEPKDRVFTNLRYSAY---- 305

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               + +     G+    T H+ RH+ A  LL NG D+ ++   LGH  + TT+IY  + 
Sbjct: 306 MNLQLLRWCMAAGISKHITFHSARHTNAVLLLENGADIYTVSKRLGHKEIRTTEIYAKII 365

Query: 303 SKNGGDW 309
            K   + 
Sbjct: 366 DKKMKEA 372


>gi|325268477|ref|ZP_08135107.1| integrase [Prevotella multiformis DSM 16608]
 gi|324989005|gb|EGC20958.1| integrase [Prevotella multiformis DSM 16608]
          Length = 409

 Score = 98.9 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 107/283 (37%), Gaps = 25/283 (8%)

Query: 33  KLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           + ++ +Y    ++   F+   Y    +    + +    E++AF            +  R 
Sbjct: 131 EGSMSAYYSTRKRLQEFIQKKYYVSDLAFSQLTENFIYELQAF--CLGELGHQQSTFFRV 188

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
            + +K+  +   +  +        +   +     P+AL+++     +D +      E + 
Sbjct: 189 AADLKTVCRLAYREGLADTLLFDKVHIERGDKKTPKALDQEA----LDKLKALRFDELEE 244

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRI---QGKGDKIRIVPLLPSVR 207
                  +       G    + + L+ ++ + DD+  L +   + K   +  + LLP   
Sbjct: 245 EMETARDVFLFACYTGAAYCDLMGLSKKHLVRDDEDCLWLKFNRQKTGVLCRIKLLPEAV 304

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           + I + +      L  +I+ P              +Q  ++ LR   G+    T+HT RH
Sbjct: 305 RLIEKMHSDERETLIPHIKYP-------------TYQSCLKALRLRAGISFPFTSHTARH 351

Query: 268 SFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           +FAT + L  G  + ++  +LGH  +S T+ Y  V  +   + 
Sbjct: 352 TFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQKLFEE 394


>gi|226356030|ref|YP_002785770.1| phage integrase [Deinococcus deserti VCD115]
 gi|226318020|gb|ACO46016.1| putative phage integrase [Deinococcus deserti VCD115]
          Length = 387

 Score = 98.9 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 59/313 (18%), Positives = 105/313 (33%), Gaps = 36/313 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + WL     E  +S  T   Y             +   +I    +R L    ++ F + 
Sbjct: 77  IEEWLDGKAQE--VSARTASIYR-------GVFLRHIRPRIGGTKVRALDAARLKGFYTD 127

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR----NLKKSNSLPRALNEKQ 133
            R     +R+  +    ++  L +     +   +    +R       +  +L  A +   
Sbjct: 128 LRRDTDLERTRVQIHLVLRQALDHAVLTGVILSNPAKVVRPATAKAVRREALADAGDVPA 187

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG- 192
                 + L   + E +       A   L    GLR  E L L    +     TL++ G 
Sbjct: 188 WTHEEASKLFAVAMEDRSPFGWAVA---LGLQTGLRRGELLGLKWSAVDLAGKTLKVVGN 244

Query: 193 --------------KGDKIRIVPLLPSVR---KAILEYYDLCPFDLNLNIQLPLFRGIRG 235
                           +  R+VPL        KA+ E+ DL            +F  + G
Sbjct: 245 LTENDGHRAVGNPKTRESRRVVPLSEEAVRVLKAVREWRDLESTRPGWGGTDFVFPTVDG 304

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           K  +P    R ++ L    G+    + H  RH+F T L + G  L+ I  ++GH     T
Sbjct: 305 KMQHPSNINRKVKALTTKAGV-RYLSMHATRHTFVTLLAATGVSLQHISKLIGHKTPLVT 363

Query: 296 Q-IYTNVNSKNGG 307
             +Y++V  +   
Sbjct: 364 MTVYSHVFKEEVA 376


>gi|167904784|ref|ZP_02491989.1| putative bacteriophage integrase [Burkholderia pseudomallei NCTC
           13177]
          Length = 235

 Score = 98.9 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 100/244 (40%), Gaps = 17/244 (6%)

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEK 132
           +S R    + + ++KR L  + + + +++      E  + + ++  L    S  R ++  
Sbjct: 1   MSARLADGVCESTVKRELRLLSAAINFVRTEHDYPELANPVQSL-GLDGGESRVRWISRS 59

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-- 190
           +A  L+       +             + L    G R +E L+L    +  ++S  R+  
Sbjct: 60  EATALI------LAAGAVARQPHLRNFVRLALSTGCRKNELLALEWHRVDFERSHFRLEC 113

Query: 191 -QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
              K  K R+VPL      A+ +         +      +F    G+ +  G  Q+    
Sbjct: 114 EHTKNGKRRLVPLNSGALLALRD--QRDWVARHCAGSEWVFASSSGRRV--GNLQKGFVA 169

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+  +   H LRH+FA+ L+  G  L  ++ +LGH  ++  + Y +++S +G + 
Sbjct: 170 ACARAGIE-NFRIHDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSSDHGREA 228

Query: 310 MMEI 313
           + ++
Sbjct: 229 VQKL 232


>gi|294084567|ref|YP_003551325.1| hypothetical protein SAR116_0998 [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664140|gb|ADE39241.1| hypothetical protein SAR116_0998 [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 470

 Score = 98.9 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 55/306 (17%), Positives = 108/306 (35%), Gaps = 30/306 (9%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T + Y     + LI              I+ +  +++  F    R            L
Sbjct: 115 PSTAKGYRRYLDKHLIPF-------FGDMKIKDVQRSDVAEFHHSLRRTPYEA---NHGL 164

Query: 93  SGIKSFLKYLKKRKITTE--SNILNMRN-LKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             I       +   +  +  +   +++    K+    R L+E++   L   +     +  
Sbjct: 165 EIISKMFNLAEMWGLRDDHTNPRRHIKKYPSKARE--RYLSEEEVKRLSAVLDEIKQYPD 222

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
           + + A     + LL   G R+ E  SL    +      L++       + V +  +V   
Sbjct: 223 ENLAAVYC--IQLLLLTGCRLGEIRSLKWDYVDRKMQVLKLPDSKTGAKYVYVGNTVMNL 280

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           + E          ++    ++  I G  L+    Q+  R+ R+  G+      H LRHSF
Sbjct: 281 LDE--VHAHPARPVDNPYVIWGLIEGSHLD--NVQKPWRRFRKMAGIE-DVRIHDLRHSF 335

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD--------QTHPSI 321
           A+  +S G  L  I  +LGH ++ TT  Y ++ +    +    + D         T P  
Sbjct: 336 ASFAVSKGMSLAVIGRLLGHTQVQTTARYAHLMAAPMTEAASSVTDVLGDLMNINTKPMS 395

Query: 322 TQKDKK 327
           +QK ++
Sbjct: 396 SQKPER 401


>gi|260769153|ref|ZP_05878086.1| hypothetical bacteriophage integrase [Vibrio furnissii CIP 102972]
 gi|260614491|gb|EEX39677.1| hypothetical bacteriophage integrase [Vibrio furnissii CIP 102972]
          Length = 322

 Score = 98.9 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 50/308 (16%), Positives = 105/308 (34%), Gaps = 55/308 (17%)

Query: 19  QNWLQNLEIERGLSKL-------------TLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           + WL+     R LS+L             T ++Y  + +          ++++      Q
Sbjct: 48  KEWLEKPADRRTLSELIALWWKYEGQSKKTAEAYLKEVK--------LVDKELGFPKAHQ 99

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNS 124
           +++  +  +   +  +     +  R ++ + + F   +  ++      +   +       
Sbjct: 100 ITHKLLADYRMAQLNKGRAMTTFNRKMNCLSNVFTALIAVKEFHNPHPVSGFKLKVPKTR 159

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
               L+  +   L+             +   +  +  L    G R  EA  L    +   
Sbjct: 160 EMAFLSVDEMNHLL-----------SVLSGDSYKVAKLCLATGARWGEAEELKGSTVSHG 208

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           + T  +  K  K R VP+   ++  I                       +   L    + 
Sbjct: 209 KVTF-LDTKNGKDRTVPISQELQDEI--------------------VTGKSGRLFKDCYA 247

Query: 245 RYIRQLRR-YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            +  QL++    LP    AH LRH+FA+H + NGG++ ++Q ILGH  +  T  Y +   
Sbjct: 248 EFYVQLKQCNFDLPKGQAAHVLRHTFASHFMMNGGNILTLQKILGHATIQQTMTYAHFAP 307

Query: 304 KNGGDWMM 311
               D + 
Sbjct: 308 DYLQDAVR 315


>gi|89147351|gb|ABD62536.1| integrase [uncultured bacterium]
          Length = 163

 Score = 98.9 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 35/90 (38%), Positives = 47/90 (52%)

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           E+     F        P     R   +   V QR ++Q  R  G+    + HT RHSFAT
Sbjct: 73  EFGWQYVFSAVRRSVDPRPGIERRHHVAETVLQRAVKQAVRDAGISKPASCHTFRHSFAT 132

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           HLL  G D+R++Q +LGH  +STT IYT+V
Sbjct: 133 HLLDAGYDIRTVQELLGHKHVSTTMIYTHV 162


>gi|78213750|ref|YP_382529.1| site-specific recombinase XerD-like [Synechococcus sp. CC9605]
 gi|78198209|gb|ABB35974.1| Site-specific recombinase XerD-like [Synechococcus sp. CC9605]
          Length = 225

 Score = 98.9 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 68/188 (36%), Gaps = 17/188 (9%)

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            M   K +  L         LT V  V+     +   I AR+  ++   Y  G R+SE  
Sbjct: 39  RMSAPKLAKPL-----ADSDLTSVLGVISAAKAKGSAIAARDYVMVRGSYLLGCRVSELC 93

Query: 175 SLTPQN--IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR- 231
            L  ++   +D+   +R+ GKG K R + +     K       L            LF  
Sbjct: 94  RLRWEDIEPLDEGGNVRLLGKGSKPRTIRVSTDTLK-------LFESLGRGEPGDWLFSS 146

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
             R  PL        +    R   +      H  RH+ ATH +  G D+ ++ + LGH  
Sbjct: 147 NKRNGPLTRQAVAARMAMWGREANV--RLHPHRCRHTHATHAIRRGVDVFTLSATLGHSS 204

Query: 292 LSTTQIYT 299
             TT  Y 
Sbjct: 205 TGTTSHYV 212


>gi|53712460|ref|YP_098452.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52215325|dbj|BAD47918.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 371

 Score = 98.9 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 51/240 (21%), Positives = 98/240 (40%), Gaps = 27/240 (11%)

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           RR  +I   S     S  + FLK L +  +   +    +  +   +++  AL+ ++   L
Sbjct: 149 RRNGRISQNSASGYWSTFRGFLKILYRNGLIKTNVNDFLDKIDTEDTMKEALSVEELYQL 208

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----DQSTLRIQGK 193
            +          K    + +++   +    LRIS+ L+L  ++I+D     +    I  K
Sbjct: 209 AET-------PCKKPIVKIASLFSCM--TSLRISDILALRWEDIVDYSAGGKCVHIITQK 259

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
                I+P+       I           +   +  +F+G     L     Q  +++  R 
Sbjct: 260 NKAEDIIPISEEALGLI---------GYSSEKKGLVFKG-----LMRCWTQVPMKEWIRS 305

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+  + T H+ R +FAT   + G D+R+IQS++ H  ++TT  Y  V   N  +   +I
Sbjct: 306 AGITKNITFHSYRRTFATLQGAAGTDIRTIQSLMAHKSITTTMRYMKVVDSNKREASNKI 365


>gi|149920205|ref|ZP_01908677.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149818971|gb|EDM78410.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 392

 Score = 98.9 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 54/284 (19%), Positives = 101/284 (35%), Gaps = 34/284 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           G    TL++     R  LI            + + Q++   ++  +  + T+ + ++S+ 
Sbjct: 90  GHKPSTLETKRQVLRLHLI-------PAFGDKRLDQINSELVQR-LKAKLTEHMANKSIN 141

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
             L  + + LK   +  +  E  +   + ++  +      +  +   LV      +    
Sbjct: 142 NVLGVLNTMLKCAVEWGVLEELPV-RAKRMRVKSPSMDFYDFDEYAALVKAAAAQSPEC- 199

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----------KGDKIRI 199
                     + L    GLR  E   L    +   +  L ++           K DKIR 
Sbjct: 200 -------LVFVLLAGDAGLRAGEIRGLHWAAVDLRRRQLTVEHSEYKGELTTPKYDKIRT 252

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           +PL   +  A+      C   L    +       R  P +    +  + + +    L   
Sbjct: 253 IPLTRRLADALGTLPRDCELVLYRGSEG------REIPTSRQTGRTMLEKAQDAAKL-RR 305

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              HTLRH+F +HL   G   R IQ + GH  L TTQ Y +++ 
Sbjct: 306 RGPHTLRHTFCSHLAMRGAAARVIQQLAGHASLVTTQRYMHLSP 349


>gi|166366145|ref|YP_001658418.1| phage integrase family protein [Microcystis aeruginosa NIES-843]
 gi|166088518|dbj|BAG03226.1| phage integrase family [Microcystis aeruginosa NIES-843]
          Length = 186

 Score = 98.9 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 74/187 (39%), Gaps = 18/187 (9%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L++ +   L             + + R+  +  + +    RISEAL LT  + +    
Sbjct: 10  KILSQAELDRLF----------AGFDNDRDRCLFGICFHTSCRISEALQLTVND-VGTAI 58

Query: 187 TLRIQGKGDK--IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVF 243
           T R      K   R +P+ P++RK +  Y      D   +   P F   R K  L+    
Sbjct: 59  TFRKSTTKGKKGTRSIPVNPALRKILDLYLQEFQPD---SYLFPSFHNAREKGHLHRSSA 115

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
              +R      GL    + H+ R S  T + + G  LR IQ I GH  L   Q Y  V+ 
Sbjct: 116 DLILRNACERAGL-KGVSTHSFRRSALTMMSNRGVPLRVIQKISGHSSLEVLQRYLEVSD 174

Query: 304 KNGGDWM 310
           +  GD +
Sbjct: 175 EQIGDAV 181


>gi|237653457|ref|YP_002889771.1| integrase [Thauera sp. MZ1T]
 gi|237624704|gb|ACR01394.1| integrase family protein [Thauera sp. MZ1T]
          Length = 330

 Score = 98.9 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 93/265 (35%), Gaps = 23/265 (8%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KIT 108
           L      K+   ++  LS   +  F    R + +   ++ R L+ I S L + ++     
Sbjct: 85  LNALRANKLAKHSLANLSAAAVAKF-RDERLKTVSAGTVLRDLALISSVLNHARREWGFP 143

Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
            E+ +  +R  ++     R L+  +     +  LL  S            I+ L     +
Sbjct: 144 VENAVQAIRKPRQPQGRERVLSHDE-----EARLLAASAPIGRRSPWLQPIIILALETAM 198

Query: 169 RISEALSLTPQNIMDDQST-LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           R  E L+L  +++  D+ T L    K    R+VPL P     +                 
Sbjct: 199 RRGELLALRWEHVSLDKRTALLPDTKNGTRRLVPLSPRAIDTLKHM-------------- 244

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           P     R  P++        +      G+      H LRH+  T L     +L  + ++ 
Sbjct: 245 PRAIDGRVFPISEPALHLRFKLACDRAGID-GLHFHDLRHTATTRLAEKLTNLAELSAVT 303

Query: 288 GHFRLSTTQIYTNVNSKNGGDWMME 312
           GH  L   + Y + N++   + +  
Sbjct: 304 GHKSLQMLKRYYHPNAEALAEKLAR 328


>gi|291297146|ref|YP_003508544.1| integrase family protein [Meiothermus ruber DSM 1279]
 gi|290472105|gb|ADD29524.1| integrase family protein [Meiothermus ruber DSM 1279]
          Length = 387

 Score = 98.9 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 60/313 (19%), Positives = 114/313 (36%), Gaps = 39/313 (12%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
              RG +  T ++Y+ +    L  L     +K+T   +R+         +  R  +K   
Sbjct: 82  RHTRGKAPNTRRNYQRELALALEHLGDIPLQKLTPHNLRR---------MLDRIGEKHSP 132

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA--LNEKQALTLVDNVLL 143
           R+L + L  ++  L+     ++        +R  + S     A  L   Q   L++    
Sbjct: 133 RTLGKVLERVRLVLREALALELIHRDPSAAVRLPRASERDKAAQHLEPPQVRLLLEYAEA 192

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------------ 191
             S          + +L +L   GLR  EAL L  +++   ++TLR++            
Sbjct: 193 SKS-------PTMALLLRVLVQLGLRKGEALGLQWRDVDFKEATLRVERQYTLQGNKADI 245

Query: 192 ---GKGDKIRIVPLLPSVRKAIL-EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
                    R++PL   +   +   Y  LC            F     +PL+      ++
Sbjct: 246 GPLKTRAARRVLPLPADLLARLQARYEALCSEGFRPQDLQNAFVFGLDRPLDVNAPNHFL 305

Query: 248 RQLRRYLGLPLSTTA----HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVN 302
            +L   +            H LRH+ A+ +L+ G DL  +   LGH   S T  +Y ++ 
Sbjct: 306 HRLVERIRADHPEFPEVRIHDLRHTAASLMLARGLDLSLVADKLGHATPSVTLGVYRHLL 365

Query: 303 SKNGGDWMMEIYD 315
            +     ++ + D
Sbjct: 366 QEERRAGVLALED 378


>gi|94442256|dbj|BAE93627.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 98.9 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 50/112 (44%)

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + G G+      L      A   +     F  N     P     +    +    Q+ I++
Sbjct: 50  VDGYGETTLPYALARKYPSAAKSWMWQYAFPSNQRCFAPDLGTTKRHHAHQTSVQKAIKR 109

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                 +     +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 110 AVTRCNINKRVGSHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|69245857|ref|ZP_00603674.1| Phage integrase [Enterococcus faecium DO]
 gi|257879174|ref|ZP_05658827.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257882007|ref|ZP_05661660.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257890004|ref|ZP_05669657.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|258615572|ref|ZP_05713342.1| phage integrase family site specific recombinase [Enterococcus
           faecium DO]
 gi|260560179|ref|ZP_05832356.1| phage integrase [Enterococcus faecium C68]
 gi|261208049|ref|ZP_05922724.1| phage integrase [Enterococcus faecium TC 6]
 gi|289565520|ref|ZP_06445968.1| phage integrase [Enterococcus faecium D344SRF]
 gi|293563460|ref|ZP_06677908.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1162]
 gi|294615159|ref|ZP_06695043.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1636]
 gi|294620828|ref|ZP_06700032.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium U0317]
 gi|68195559|gb|EAN10001.1| Phage integrase [Enterococcus faecium DO]
 gi|257813402|gb|EEV42160.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257817665|gb|EEV44993.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257826364|gb|EEV52990.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|260073746|gb|EEW62071.1| phage integrase [Enterococcus faecium C68]
 gi|260077633|gb|EEW65349.1| phage integrase [Enterococcus faecium TC 6]
 gi|289162718|gb|EFD10570.1| phage integrase [Enterococcus faecium D344SRF]
 gi|291591979|gb|EFF23604.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1636]
 gi|291599613|gb|EFF30626.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium U0317]
 gi|291604462|gb|EFF33948.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1162]
 gi|323481381|gb|ADX80820.1| phage integrase family protein [Enterococcus faecalis 62]
          Length = 380

 Score = 98.9 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 79/232 (34%), Gaps = 33/232 (14%)

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSN--SLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
             L+Y    +    + +      +K       +  ++++   L+D           + + 
Sbjct: 140 QILRYGVAMQYIDNNPMEKTLLPRKKEYEKNRKFYSKEELNNLLDAF-------KDFGNM 192

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------------GDKIR 198
           +  A   LL   G+R SE L+L  ++I      L +                       R
Sbjct: 193 KQYAFFRLLAYTGMRKSEVLALQWKDIDTFNKELHVNKTLAVDEFGKVIIQSPKTRASRR 252

Query: 199 IVPLLPSVRKAILEYYDLCPFDL------NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           ++ L       +  +      +         + +  +F  ++     P     ++R + +
Sbjct: 253 VISLDTETLSILNNWKLQQKEEYLKLGYNTSSKEQHVFTTVKNTLYIPNTVNDWLRYILK 312

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303
              LP   T H  RH+ A+ LL  G  ++ +Q  LGH     T  IY ++ +
Sbjct: 313 KYNLPR-ITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLDIYAHITN 363


>gi|303246068|ref|ZP_07332349.1| integrase family protein [Desulfovibrio fructosovorans JJ]
 gi|302492464|gb|EFL52335.1| integrase family protein [Desulfovibrio fructosovorans JJ]
          Length = 373

 Score = 98.9 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 61/298 (20%), Positives = 104/298 (34%), Gaps = 41/298 (13%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT-EIR 72
           LL+    +L ++      S  T +      R     L       I  + +  L+Y  ++ 
Sbjct: 88  LLELGHRYLDHMRA----SGRTDK----HIRNIERLLENQFVPVIGDKPVDSLTYQGDMV 139

Query: 73  AFISKRR------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
            FI   +       +     ++ +    +     +     +T  + + N +  K      
Sbjct: 140 QFILHFKGVSGTTKKTRSQYTVNKYCDYLSFIFNFGIDNGLTKVNPLKNWKKPKVQ---- 195

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI--SEALSLTPQNIMDD 184
                   LTL D   +    E           + + +  G R   SE LSL  +NI   
Sbjct: 196 ---PWDLKLTLDDAKKIMACAE-----PHLRWAMEVCFNLGTRPGESELLSLRWENIDFT 247

Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
             T+RI   K    R VP+ PS  K + E           + Q        G+ L     
Sbjct: 248 AGTVRIYATKTKTYRTVPINPSFLKRLEE--------EKASSQSEYVIEYMGRKLT--TI 297

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTN 300
           ++  +   +  G+   T  + LRH FAT LLS G DL ++  ++GH  +  T   Y +
Sbjct: 298 RKAFKHACQRAGITYPTRMYDLRHLFATTLLSRGADLAAVSKMMGHSTVKLTADTYYH 355


>gi|237738086|ref|ZP_04568567.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
 gi|229419966|gb|EEO35013.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
          Length = 353

 Score = 98.9 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 59/319 (18%), Positives = 114/319 (35%), Gaps = 46/319 (14%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQ-FLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
            + +++++     L K T+ + +       L F +    + IT   +RQ   T I     
Sbjct: 60  YELYMEDMTH--RLRKHTMMTKKKIIEDKILPFFSKLKLDSITPVKVRQWQNTLISG--V 115

Query: 77  KRRTQKIGD---RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
             +         +++   L+ I     Y  K     E+      ++ K  +    +   +
Sbjct: 116 SIKNTPYSPTYLKTINNQLTAI---FNYAVKYHNMKENPCHKAGSMGKKKAEEMIIWTPE 172

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--- 190
                   + +           N     +L+  G+RI E L+LT ++I     T+ I   
Sbjct: 173 EFEKFSQFIKNK--------MPNYVGFNILFWTGIRIGELLALTLKDIDLRNKTISISKS 224

Query: 191 ------------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
                              R+V +  SV + +  Y  +                +R  P 
Sbjct: 225 YQRLEGEDVITAPKTTKSKRVVTIPDSVVELLERYLKMLYKPSK---------TMRLFPY 275

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-I 297
              +F+  +R      GL      H LRHS A++L +NG D+ +I   LGH  + TT  I
Sbjct: 276 TKHLFENDLRIYSEKAGL-KKIRIHDLRHSHASYLFNNGVDILTIAKRLGHENIETTLGI 334

Query: 298 YTNVNSKNGGDWMMEIYDQ 316
           Y +    +  + +++I ++
Sbjct: 335 YAH-TYTSADEKLLKILNK 352


>gi|94264589|ref|ZP_01288374.1| Phage integrase [delta proteobacterium MLMS-1]
 gi|93455007|gb|EAT05241.1| Phage integrase [delta proteobacterium MLMS-1]
          Length = 353

 Score = 98.9 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 57/276 (20%), Positives = 97/276 (35%), Gaps = 28/276 (10%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSF 98
           Y    R    F  F      +   + +         ++  R      R+       ++  
Sbjct: 35  YSSQARLLSYFDRFLVAHYPSGPAVTRQMVDHYMRSLAYLR-----PRARSNRFCVVRQL 89

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSL----PRALNEKQALTLVDNVLLHTSHETKWIDA 154
            +Y+ +              ++  NS     P   +EK+   L+         E+     
Sbjct: 90  CEYISRTGPCCYVP----EPIRIGNSQRDFCPYIFSEKEIAALLSAASAMPPSESLRPHT 145

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213
               +  LLY  G+RI EA +LT ++       + I +GK  K R +PL PS    + +Y
Sbjct: 146 Y-RTLFGLLYTTGIRIGEAFALTLKDFQQKHDLIYIAEGKFKKARWLPLHPSTSLMLNQY 204

Query: 214 YDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA----HTLRHS 268
                          PLF  +R   L+        RQL     +  +T      H LRH+
Sbjct: 205 VAHPLRGGGTRTPDSPLFINLRAARLHHCTVHHAFRQLLEQSDIAHNTLPRPRIHDLRHT 264

Query: 269 FATH----LLSNGGD----LRSIQSILGHFRLSTTQ 296
           FA H       +GGD    L  + + +GH  +++T+
Sbjct: 265 FAVHKLLAWYRDGGDVNARLPVLATYMGHVNITSTR 300


>gi|20387472|gb|AAM21921.1| probable integrase [Saccharomonospora phage PIS 136]
          Length = 406

 Score = 98.9 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 90/292 (30%), Gaps = 37/292 (12%)

Query: 47  LIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK 106
              +  +   +     + QL   +I+ ++            ++   + +++ ++      
Sbjct: 90  ASMVRTHLGPRWGDVPLNQLHRRDIQEWVDDLVRAGYSPSYVRSLFATLRASVREAVHHD 149

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
           + +      +R  + S         +    +               D    A+L+LL   
Sbjct: 150 MLSTDPSEGVRLPRISRRARVHTTLEDVERM----------RPYLPDVHADALLFLL-ET 198

Query: 167 GLRISEALSLTPQNIMDDQSTLRI-------------QGKGDKIRIVPLLPSVRKAILEY 213
           GLR  E   L    +  D+  L +               K   +R VPL           
Sbjct: 199 GLRPGELAGLHVNRVDLDEGWLMVAEVYVDRRNIIRPIPKDGDVRTVPLTSRAISTARRQ 258

Query: 214 YDLC---------PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            +             D     Q  LFR  RG  L P +    IR+     GLP     ++
Sbjct: 259 LERRTLSGGCGIPHSDGTECRQDLLFRNKRGGTLRPLLLGNRIREAAIKAGLPTRGG-YS 317

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT---NVNSKNGGDWMMEI 313
            R  FAT   + G D   +  ++GH  +  T+ Y    + +       + E+
Sbjct: 318 GRRGFATRAAAGGMDAFLLAEVMGHADVRVTREYVQQGHDSRARALAALGEV 369


>gi|89147526|gb|ABD62623.1| integrase [uncultured bacterium]
          Length = 162

 Score = 98.9 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 31/66 (46%), Positives = 40/66 (60%)

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             ++P    R +    R  G+    T HT RHSFATHLL +G D+R +QS+LGH  L TT
Sbjct: 96  WHIHPSSVDRVVYGAGRRAGIGKRVTCHTFRHSFATHLLESGYDIRQVQSLLGHASLKTT 155

Query: 296 QIYTNV 301
            IYT+V
Sbjct: 156 MIYTHV 161


>gi|16519920|ref|NP_444040.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
 gi|2497419|sp|P55635|Y4RB_RHISN RecName: Full=Putative integrase/recombinase y4rB
 gi|2182599|gb|AAB92468.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
          Length = 314

 Score = 98.9 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 65/316 (20%), Positives = 110/316 (34%), Gaps = 28/316 (8%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           RQ   + +E+ RGL     ++ E     F  FL               ++     A+   
Sbjct: 5   RQAVQEYIEMRRGLGFKLRET-ERGLIDFAAFLE--------ANDTPHITTELALAW--A 53

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           +R  +         L  ++ F +Y       T+     +   +   + P   +++    L
Sbjct: 54  QRPSRAQPSHWATRLGYVRVFARYRAAADPRTQIPPSGLLPFRPKRARPYLYSKEDIQRL 113

Query: 138 VDNVLLHTSHETKWI--DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KG 194
           +   L      T+          +  LL   GLR+ EA +L   ++  D + L I+G K 
Sbjct: 114 LSAALEMPCRYTRCKLRPWTYYCLFGLLSVSGLRLGEARNLKLADVDFDAAVLTIRGTKF 173

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRY 253
            K R+VP+  S    + +Y              P LF    G  L+ G   R    L R 
Sbjct: 174 GKSRLVPMHASTCAVLRDYLKRRRQHCAAQAASPYLFTSQLGNRLDVGDIHRTFYALSRQ 233

Query: 254 LGL-----PLSTTAHTLRHSFAT----HLLSNGGD----LRSIQSILGHFRLSTTQIYTN 300
           +GL           H +RH FAT           D    L  + + LGH  ++ TQ Y  
Sbjct: 234 IGLRGATDSHGPRLHDMRHVFATNTLVRWYEAEQDPERLLPILSTYLGHVHVADTQWYLT 293

Query: 301 VNSKNGGDWMMEIYDQ 316
            + +   + M  +  +
Sbjct: 294 GSPELMKEAMRRLERR 309


>gi|304382758|ref|ZP_07365242.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
 gi|325856130|ref|ZP_08171982.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|327313879|ref|YP_004329316.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|304336077|gb|EFM02323.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
 gi|325483687|gb|EGC86653.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|326945764|gb|AEA21649.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 422

 Score = 98.9 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 59/315 (18%), Positives = 124/315 (39%), Gaps = 32/315 (10%)

Query: 14  LLKERQNWLQNLEIERGL--SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR--QLSYT 69
           LL+E + +++      GL  +K T  +Y          +  Y  E++  + IR  QL Y 
Sbjct: 110 LLEEARLFIEEKRPCVGLTIAKPTFANYIY----AAQLIKSYLCERLDQEDIRYAQLDYG 165

Query: 70  EIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            I       ++++ +   +++  +  ++  +   +++K       ++ +  +  +   R 
Sbjct: 166 FIEGLDFYLKSERNLSLATIQIVVIFLRKIIGIGQQKKYIRIDPFVDYKA-ELPHRTRRY 224

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQ 185
           L  ++   ++   ++    E          +       GL   +   L P++I+   D  
Sbjct: 225 LTTEELQRVLQTPIIDKQFERA------RQLFLFCAFTGLARVDMQRLKPKHIIYNADGT 278

Query: 186 STLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           + +RI + K D   I+PLLP  ++ +  Y        +      +F       L      
Sbjct: 279 AEIRIKRQKTDVEAIIPLLPIAKQILSLYI------KDKKADDLIFPN-----LTIRKAS 327

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
                + +   +    T H  RH+F+T   LSNG  + ++  +LGH  + TTQIY  +  
Sbjct: 328 LACVNIGQICRIEKGLTFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITD 387

Query: 304 KNGGDWMMEIYDQTH 318
               + M  + D+ H
Sbjct: 388 HKIQEDMTALTDREH 402


>gi|237738236|ref|ZP_04568717.1| phage integrase [Fusobacterium mortiferum ATCC 9817]
 gi|229420116|gb|EEO35163.1| phage integrase [Fusobacterium mortiferum ATCC 9817]
          Length = 319

 Score = 98.9 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 54/292 (18%), Positives = 114/292 (39%), Gaps = 22/292 (7%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKI--TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           T + YE + +Q++ +L  Y   ++  +  TI+    + +  +I+  R     ++++   L
Sbjct: 30  TYRVYESNMKQYMKYLQKYEGNRLLLSDSTIKNC-VSILERYINHCREAGNNNQTINNKL 88

Query: 93  SGIKSFLKYLKKRKITTESNI-LNMRNLKK----SNSLPRALNEKQALTLVDNVLLHTSH 147
           + I SF  +  KR + +       +  LKK           L  +  +       +   H
Sbjct: 89  TAISSFYIWCVKRDLISHHPFQHKLDRLKKGSFDKRRESYYLTIEDIIK----ARILMQH 144

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSV 206
            +K  D ++  +  L      RIS   +L    +   +   + ++ KG+KI  V  L + 
Sbjct: 145 NSKKFDIQSRLLWELFLESANRISAIQNLKISQLNLKEGYFKDVKEKGNKIVDVIFLDNT 204

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGI---RGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
            K + E+ +      N  +   LF      + + +     +  I+++   LG       H
Sbjct: 205 EKVLQEWLEYRKE--NNLVSDYLFITKEGGQCRQMAQSTIRSRIKKIGELLG-NDKLYPH 261

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV-NSKNGGDWMMEI 313
           TLR +   +LL N  D+ +      H  ++TT + Y          + + ++
Sbjct: 262 TLRKTAI-NLLKNIADINTASEFANHNNINTTREHYIKARTGAENREKIRQL 312


>gi|223369790|gb|ACM88764.1| integrase [uncultured bacterium]
          Length = 163

 Score = 98.9 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 37/162 (22%)

Query: 177 TPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLC---PFDLNLNIQLP---- 228
             +++  D   + +  GKG K R   L   +  AI++  +       D NL    P    
Sbjct: 1   RVKDVDFDNGCITVHDGKGGKSRNSLLPTRLIPAIIQLIEQARLIQQDDNLQGVGPSLPF 60

Query: 229 -----------------LFRG-----------IRGKPLNPGVFQRYIRQLRRYLGL-PLS 259
                            +F             +    L+  V ++ ++   +  G+    
Sbjct: 61  ALDRKYPSAYRQAAWMFVFPSSTLCNHPYNGKLCRHHLHDSVARKALKAAVQKAGIVSKR 120

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSF THLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHTFRHSFTTHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|134046210|ref|YP_001097695.1| phage integrase family protein [Methanococcus maripaludis C5]
 gi|132663835|gb|ABO35481.1| phage integrase family protein [Methanococcus maripaludis C5]
          Length = 182

 Score = 98.9 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 67/158 (42%), Gaps = 8/158 (5%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
           +     +LYG  LR+SE L++  +NI  ++   ++     +   + ++P   + + E   
Sbjct: 27  HKLFFKMLYGMALRVSELLTIEVKNINLNEGVCKLLDTKTETFQICVIP---EWLNEDIF 83

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
               D NL     LF+       N       +++  +   +    + HT R S A HLL+
Sbjct: 84  GHIVDNNLKDDDRLFKFK-----NRTYAWELVKKYTKNAKIHKEFSTHTFRRSRALHLLN 138

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +G  L  +   L H  ++TT  Y  +   +    +++I
Sbjct: 139 DGVPLEKVSKYLRHKSINTTMHYLKITVDDIKKELVKI 176


>gi|332884385|gb|EGK04649.1| hypothetical protein HMPREF9456_03402 [Dysgonomonas mossii DSM
           22836]
          Length = 417

 Score = 98.9 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 54/298 (18%), Positives = 111/298 (37%), Gaps = 29/298 (9%)

Query: 17  ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
             + +L   + E  LS ++++  +    ++  FL             +++  +++ A+I+
Sbjct: 112 HVEGYLLWCKEELLLSTVSIKRRKNMLSRYDNFLFD-----------KKIDLSDVTAYIN 160

Query: 77  K--RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN---LKKSNSLPRALNE 131
                T K+  R   +    ++ +  Y+ + K   +     +       +   LP   + 
Sbjct: 161 DDFFYTCKLSYRREFKHF--LREYFTYIYESKYIDKDLSSTVVKDSFTPRPEKLPSTYST 218

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI- 190
            +    +     +    +     R+  +  L    GLR S+ + L   +I  +++ ++I 
Sbjct: 219 DEIRHAI-----NAIDRSTPKGKRDYIVFLLAAEYGLRASDIVQLRMTDIDWERNEIKII 273

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           Q K  K   +PL+ SV  AI++Y          N+ +      R   +        I   
Sbjct: 274 QCKTKKPLTLPLIASVGNAIIDYMRNGHPSEGGNLIIVQHGNTRKGKIVHSCALHAIVSN 333

Query: 251 RRYLG-----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
               G            H+LRHS A+++L  G  L  I   LGH    +TQ Y  ++ 
Sbjct: 334 AIRAGNGQTAATHKHGPHSLRHSLASNMLKMGVSLNVISGSLGHSITQSTQTYLKIDF 391


>gi|301058440|ref|ZP_07199461.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300447496|gb|EFK11240.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 388

 Score = 98.9 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 103/260 (39%), Gaps = 21/260 (8%)

Query: 53  YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
           Y +E    +  ++L   ++     K        +++K  L+ ++    +  K+++     
Sbjct: 121 YLKEPFGGKEPKELLPLDVDRVRLKMLKAGKSPQTVKLVLALLRRLANFGAKKRLCEGLR 180

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
            + +   + +N     L  +Q   L+         E     A N  ++ ++   G+R SE
Sbjct: 181 FI-IEMPQVNNIKIEDLTAEQLDALM-----RAIDEDDHPQAGN--LMKMVLYTGMRRSE 232

Query: 173 ALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
              L   +I   +S ++I+  KG   + +PL  + R  + E+               +F 
Sbjct: 233 LFRLKWSDIDGQRSFIKIRDPKGGVDQNIPLNDAARDLLKEHPSTG--------SPYVFP 284

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-HTLRHSFATHLLSNG-GDLRSIQSILGH 289
           G  G           + ++R   GLP    A H LRH +A+ L S+G  DL ++Q +L H
Sbjct: 285 GRGGGQ--RVDIHHQVNRIRDRAGLPKDFRALHGLRHVYASMLASSGKVDLYTLQRLLTH 342

Query: 290 FRLSTTQIYTNVNSKNGGDW 309
              S T  Y ++  +   + 
Sbjct: 343 KSPSMTMRYAHLRDEALKEA 362


>gi|269104781|ref|ZP_06157477.1| putative integrase [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268161421|gb|EEZ39918.1| putative integrase [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 428

 Score = 98.9 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 120/357 (33%), Gaps = 63/357 (17%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI-- 75
             +++++  + + + +LT  S                 E++    I  +++ +I +    
Sbjct: 85  LNDFIEHFLLIKSV-ELTESSIIRTRSGLKTCAKLLGGERL----ISNITHADIMSMRLK 139

Query: 76  -----------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
                       +R +     +++   L+   S  KY  + +    +    +  L+   +
Sbjct: 140 LLNGSNFSPSPIRRTSNGRSVKTVNTYLTICSSLFKYAYRTEAIHTNPFDGVSRLRTVKT 199

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
            P  L   + + L+++  +       W          +    GLR  E  +L  ++I   
Sbjct: 200 PPNPLEHDEFIRLINHPSIREQDVNLWT---------VAVYTGLRHGELSALAWEDIDLV 250

Query: 185 QSTL------------RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL----- 227
           + T+            R+       R + LL    +A++          ++ +++     
Sbjct: 251 KRTITVKRTATQQKRFRVPKTESGERTINLLAPAYEALVRQKACTFLYPSIAVEVESRQK 310

Query: 228 ---------PLFRGIRGKP-----LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                     +FR           ++  V     R+  +  G+      +  RH++A  L
Sbjct: 311 RNHIQEQCTWVFRMTSYSAEAKGNISTKVISNMWRKCTKLAGIAYR-NPYQTRHTYACWL 369

Query: 274 LSNGGDLRSIQSILGHFRLST-TQIYTNVNSKNGGDWMMEIYDQTH---PSITQKDK 326
           L++G +   I S +GH  +S    +Y      N    + +I  Q +   PS   + K
Sbjct: 370 LNSGANPAFIASQMGHSDMSMVISVYGAWMPSNNESEIAKIERQLNCIAPSAPHQKK 426


>gi|167847818|ref|ZP_02473326.1| putative bacteriophage integrase [Burkholderia pseudomallei B7210]
          Length = 235

 Score = 98.9 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 99/244 (40%), Gaps = 17/244 (6%)

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEK 132
           +S R    + + ++KR L  + + + +++      E  + + ++  L    S  R ++  
Sbjct: 1   MSARLADGVCESTVKRELRLLSAAINFVRTEHDYPELANPVQSL-GLDGGESRVRWISRS 59

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-- 190
           +A  L+       +             + L    G R +E L+L    +  ++S  R+  
Sbjct: 60  EATALI------LAAGAVARQPHLRNFVRLALSTGCRKNELLALEWHRVDFERSLFRLEC 113

Query: 191 -QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
              K  K R+VPL      A+ +         +      +F    G+ +  G  Q+    
Sbjct: 114 EHTKNGKRRLVPLNSGALLALRD--QRDWVARHCAGSEWVFASSSGRRV--GNLQKGFVA 169

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+  +   H LRH+FA+ L+  G  L  ++ +LGH  ++  + Y +++  +G + 
Sbjct: 170 ACARAGIE-NFRIHDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREA 228

Query: 310 MMEI 313
           + ++
Sbjct: 229 VQKL 232


>gi|83722823|gb|ABC41683.1| integrase [uncultured bacterium]
          Length = 163

 Score = 98.9 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 66/162 (40%), Gaps = 37/162 (22%)

Query: 177 TPQNIMDDQSTLRIQ-GKGDKIRIVPLLP---SVRKAILEYYDLCPFDLNLNIQLP---- 228
             +++  D   + +  GKG K R   L        K ++E   L   D NL    P    
Sbjct: 1   RVKDVDFDNGCITVHDGKGGKSRNSLLPTRLIPAIKQLIEQARLIQQDDNLQGVGPSLPF 60

Query: 229 -----------------LFRG-----------IRGKPLNPGVFQRYIRQLRRYLGL-PLS 259
                            +F             +    L+  V ++ ++   +  G+    
Sbjct: 61  ALDRKYPSAYRQAAWMFVFPSSTLCNHPYNGKLCRHHLHDSVARKALKAAVQKAGIVSER 120

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|291482891|dbj|BAI83966.1| hypothetical protein BSNT_00830 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 368

 Score = 98.9 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 93/278 (33%), Gaps = 37/278 (13%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            I+++++ EI  F        + ++S+   ++ +          +I   +   N++ L  
Sbjct: 102 DIQKITHREITDFRKHLMETGLSNKSVNNIMTSLSKIFDTAVHEEILKRNPCDNVKRLPL 161

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG----CGLRISEALSLT 177
           +    +    ++    +             +  ++  +    Y      GLR  E L+L 
Sbjct: 162 TRKKMKFWRPEEFKKFIS------------LIPQDQLLFKTFYTVAFLTGLRCGEMLALQ 209

Query: 178 PQNIM---------------DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
            ++I                D Q  +      + IR V +   + K +  + +      N
Sbjct: 210 WKDIDKILLEIDVHKSCTWLDGQFVVTTPKTKNSIRRVSINKKLLKLLESWKEAQEELFN 269

Query: 223 ----LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278
                +         +  P    +F R I+   +   L      H  RHS    L+  G 
Sbjct: 270 ELGIRHSHDTYIFQYKDTPSRKDIFSRKIKYFCKDSDLT-PIRLHDFRHSHVALLIHQGE 328

Query: 279 DLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYD 315
           D  +I+  LGH  + TT  +Y ++      +   ++ D
Sbjct: 329 DYITIKERLGHGSVKTTIDVYGHLYPNKQKEMADKLDD 366


>gi|226355111|ref|YP_002784851.1| Tyrosine recombinase xerC-like protein [Deinococcus deserti VCD115]
 gi|226317101|gb|ACO45097.1| putative Tyrosine recombinase xerC-like protein [Deinococcus
           deserti VCD115]
          Length = 379

 Score = 98.9 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 58/338 (17%), Positives = 112/338 (33%), Gaps = 50/338 (14%)

Query: 11  SFELLKERQNWLQNLEIERG---LSK--LTLQSY--------ECDT-----RQFLIFLAF 52
           S +   E +  LQ L  ER    LS   LTL +Y        + D      R + +    
Sbjct: 40  SAKTQAEAREKLQALVSERNGGCLSSETLTLAAYLDRWLTHKQRDVKFNTHRSYEMTARV 99

Query: 53  YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
           + + ++    + +L+   I   +S    +    +     +  +++ L    + ++   + 
Sbjct: 100 HIKPRLGKVQLDKLTPLHIEELVSALLAEGQSAKVALGCVKLLRTALTQAVRWQLVGRNV 159

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
             ++   K +    +     +A   +     H          R  A+ YL    G+R  E
Sbjct: 160 AQSVTPPKHTPKEMQVWTPDEASRFLAVAREH----------RLYALFYLALATGMRRGE 209

Query: 173 ALSLTPQNIMDDQSTLRIQG---------------KGDKIRIVPLLPSVRKAIL-----E 212
            L L  ++I     TL +Q                     R + L P   +A+      +
Sbjct: 210 LLGLKWESINMLAGTLVVQHNLIDRVSSVTLETPKTRASRRTIALSPDTVEALRAHRHSQ 269

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           + + C           +F    G  + P       R+L     +P     H LRH+ A+ 
Sbjct: 270 WLEQCKAGEKWQEHGMVFPSDVGTLMFPANLMGAFRRLCAKARVPA-IRLHDLRHTSASL 328

Query: 273 LLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDW 309
           L+      + +   LGH     T ++Y +V  +     
Sbjct: 329 LIRANVPPKVVADRLGHTDPGFTLRVYAHVYEEQRRAA 366


>gi|94442284|dbj|BAE93641.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 98.9 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 51/112 (45%)

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + G G+      L      A   +        N     P    ++   ++    Q+ I++
Sbjct: 50  VDGYGETTLPYALARKYPSAAKSWMWQYALPSNQRCFAPDLGTVKRHHVHQTSVQKAIKR 109

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                 +     +H  RHSFATHLL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 110 AVTRCNINKRVGSHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|89147402|gb|ABD62561.1| integrase [uncultured bacterium]
          Length = 163

 Score = 98.9 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 47/89 (52%)

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +     F        P     R    +    Q+ ++   R  GL    + HTLRHSFATH
Sbjct: 74  WLWQYVFPATKRSIDPRPGAERRHHASATGLQKAVKDAIRRAGLQKRGSCHTLRHSFATH 133

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LL++G D+R++Q +LGH  +STT IYT+V
Sbjct: 134 LLADGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|223933696|ref|ZP_03625672.1| integrase family protein [Streptococcus suis 89/1591]
 gi|223897649|gb|EEF64034.1| integrase family protein [Streptococcus suis 89/1591]
          Length = 388

 Score = 98.9 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 86/234 (36%), Gaps = 22/234 (9%)

Query: 96  KSFLKYLKKRKITTESNILNMRNL----KKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           K  L+Y    +  + +   ++       K      +    +     +D   L    + K+
Sbjct: 148 KRILQYGVTMQAISSNPARDVVLPRNTQKAKIKKVKHFENQDLKKFLDY--LGGLDQAKY 205

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK------------GDKIRI 199
            +   + +   L   G RI+EAL+L+  +I  + +T+ I                   R 
Sbjct: 206 RNLYEATLYKFLLSTGCRINEALALSWSDIDLENATISITKTLNHLGQINSPKSKASYRD 265

Query: 200 VPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           + +  +    +  Y      +       +  +F        N       ++   +  G+P
Sbjct: 266 IDIDQATITMLKAYQLRQIQEAWKLGQTETVVFSDFIHDYPNNKTLGTRLKTRFKRAGVP 325

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWM 310
            +   H  RH+ A+ LL++G   + +Q  LGH  LS T  IY++++ +N    +
Sbjct: 326 -NIGFHGFRHTHASLLLNSGIPYKELQYRLGHSTLSMTMDIYSHLSKENAKKAV 378


>gi|170717887|ref|YP_001784941.1| phage integrase family protein [Haemophilus somnus 2336]
 gi|168826016|gb|ACA31387.1| phage integrase family protein [Haemophilus somnus 2336]
          Length = 308

 Score = 98.9 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 84/215 (39%), Gaps = 26/215 (12%)

Query: 103 KKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
               +             R  +   +  + LN+ +  TL+  + L       W       
Sbjct: 90  VDEGLLPRDPTRKAIIKGRPPRLKKT--KYLNQFELHTLITQLNLTKEINWDW------- 140

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY 213
            + L+   G+R SEAL+LTP++      TL I    +        P     SVRK  L++
Sbjct: 141 FILLIAKTGMRFSEALALTPKDFDFSHQTLTINKTWNYKDGGGFQPTKNRSSVRKIPLDW 200

Query: 214 YDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
             +  F     N   + P+F   +   +        + +  +   +P+  + H LRH+ A
Sbjct: 201 QTIIQFAELIKNKPEEQPIFVRKK---IFNSTVNNILIRRCKKANIPI-ISLHGLRHTHA 256

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           + LL  G  + S+   LGH  ++TTQ  Y ++  +
Sbjct: 257 SLLLFAGVSIASVARRLGHSNMTTTQKTYLHIIQE 291


>gi|329113620|ref|ZP_08242399.1| Shufflon-specific DNA recombinase [Acetobacter pomorum DM001]
 gi|326697066|gb|EGE48728.1| Shufflon-specific DNA recombinase [Acetobacter pomorum DM001]
          Length = 424

 Score = 98.9 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 57/293 (19%), Positives = 106/293 (36%), Gaps = 31/293 (10%)

Query: 27  IERGLSKL----TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           IER +       T   Y+     F+        +KI  + +  ++++++  F     T +
Sbjct: 137 IERHVKTHLKSTTQAEYQRAIDLFIT-------KKIGSRKMAAVTHSDVVTF---HHTYR 186

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNLKKSNSLPRALNEKQALTLVDN 140
                  R+L  +           + T++      ++  K+     R L  ++   L   
Sbjct: 187 HIPYQANRTLGVLSKMFSLAILWGVRTDNVNPCRGVKRYKEQKRE-RYLAAEEHQRLGKA 245

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +    S   + ++A       LL   G R+ E   L  + +  D+  +R+    +  R V
Sbjct: 246 LDDARSTMPEAVNA-----FQLLLLTGCRLREIQRLKWEYVFLDEGVIRLPDSKNGARTV 300

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
            L  S    +         D+      P     R    +    ++  R++R+  GL    
Sbjct: 301 QLGESAIGLL--------GDIPRVEGNPYVITGRKDGGHLTDLEKPWRRIRKEAGLE-DV 351

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             H LRHSFA+  L  G DL  I  +LGH  L +T  Y ++  +     +  I
Sbjct: 352 RIHDLRHSFASDALELGEDLIMIGKLLGHRDLKSTARYAHLKKEPIQRAVKGI 404


>gi|251780460|ref|ZP_04823380.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243084775|gb|EES50665.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 385

 Score = 98.9 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 47/311 (15%), Positives = 103/311 (33%), Gaps = 50/311 (16%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLK 89
           LS  T   Y       LI L       +    I+ +S   ++ F +    +K +   ++K
Sbjct: 82  LSVNTRNDYLSRINTNLIPL-------LGNYKIKDISIDVVQNFYNTLINEKHLKPTTVK 134

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           + L  + S LKY + + +  +     ++ +K         N+++    ++ +     +  
Sbjct: 135 KYLDILSSCLKYAQSKDLIYKLPTSYIKKVKIQKPKIEYWNQEEVNFFLNYIKNTYLYTP 194

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI---------- 199
            +ID             GLRI E   L   ++      + +  +    +           
Sbjct: 195 IFIDIL----------TGLRIGELCGLRWCDVDLQNGIITVNHQLIHDKRLKVLLLADLK 244

Query: 200 ---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV--------FQRYIR 248
                   ++ K +++Y      +        +    +     P            +Y +
Sbjct: 245 TSSSHRSITIPKILIDYLKELKANRQATNTEYVVLDRQDFKYIPRSLSMNFTKKVAKYKK 304

Query: 249 QL--RRYLGLP--------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QI 297
            +   +                + H LRH+ AT L++NG +++ +   LGH  +  T   
Sbjct: 305 SIDDFKKANEEVPHGYMQLKQISFHGLRHTHATLLIANGENVKVVSERLGHTDIRMTLNT 364

Query: 298 YTNVNSKNGGD 308
           YT+V      +
Sbjct: 365 YTHVLDSMKNN 375


>gi|94442260|dbj|BAE93629.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 98.9 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 46/91 (50%)

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            E+     F        P    IR   L+    Q+ +++  R  G+      HTLRH FA
Sbjct: 71  REFKWQFLFPSGRLSADPYGGRIRRHHLHESTLQKSVKKAARGCGINKRVGCHTLRHCFA 130

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           THLL    D+R++Q +LGH  +STT IYT+V
Sbjct: 131 THLLEANHDIRTVQELLGHAHVSTTMIYTHV 161


>gi|76799083|ref|ZP_00781273.1| integrase/recombinase, phage integrase family [Streptococcus
           agalactiae 18RS21]
 gi|77408898|ref|ZP_00785623.1| integrase/recombinase, phage integrase family [Streptococcus
           agalactiae COH1]
 gi|76585551|gb|EAO62119.1| integrase/recombinase, phage integrase family [Streptococcus
           agalactiae 18RS21]
 gi|77172489|gb|EAO75633.1| integrase/recombinase, phage integrase family [Streptococcus
           agalactiae COH1]
          Length = 390

 Score = 98.9 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 94/272 (34%), Gaps = 27/272 (9%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKR----SLSGI-KSFLKYLKKRKITTESNILNMR 117
           + +L+   I++ I+K   +              +  + K  L+Y    +    +    + 
Sbjct: 112 LDKLTTPLIQSIINKLADKTNKGERKAYLHYDRIHALNKRILQYGVIMQAIPFNPAREVI 171

Query: 118 NLKKSNS----LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
             + +        +     +  T  +   L+   + K+       +   L   G RI+EA
Sbjct: 172 LPRNTKKANTKRVKHFENDELRTFFNY--LNNLDKNKYRYFYEVTLYKFLLATGCRINEA 229

Query: 174 LSLTPQNIMDDQSTLRIQGK------------GDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           L+L   +I  D + + I                   R + +       + +Y      + 
Sbjct: 230 LALNWSDIDLDNAVVHITKTLNYKQEINSPKSKSSYRDIDIDSRTVTMLKQYRRRQIQEA 289

Query: 222 NL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
                 +  +F     K  N    Q  +R   +   +  +   H  RH+ A+ LL+ G  
Sbjct: 290 WKLGRSETVVFSDFIHKYPNNRTLQTRLRTHFKRANVS-NIGFHGFRHTHASLLLNTGIP 348

Query: 280 LRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWM 310
            + +Q  LGH  LS T  IY++++ +N    +
Sbjct: 349 YKELQYRLGHSTLSMTMDIYSHLSKENAKKAV 380


>gi|332882420|ref|ZP_08450047.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332679638|gb|EGJ52608.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 388

 Score = 98.9 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 57/298 (19%), Positives = 110/298 (36%), Gaps = 37/298 (12%)

Query: 14  LLKERQNWLQNLE------IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           LL   + ++++ E       E+G    T QSY         F+      K++      L+
Sbjct: 109 LLGYFRTFIEHFEKRVGVNREKG----TAQSYRYACNCVAAFIQEKY--KLSDVPFTALN 162

Query: 68  YTEIRAFISKRRTQKI-GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
            + I  +    RT++     ++   ++ + + +       I T          +      
Sbjct: 163 RSFIDNYDLYLRTERRFALGTIVLLVTRLNTIVGEAIAEGIITADPFAGYEA-EHPEREQ 221

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQ 185
           + L   +   L+   L    H+ K    R+  +       G+   +   LT ++  + + 
Sbjct: 222 KYLTAAELQRLMTTPL----HDPKLYHIRDLFLFSC--YTGIPYGDMCRLTTEDLEVAED 275

Query: 186 STLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
             + I   + K      VPLL      + +Y D+ P             G      +   
Sbjct: 276 GEVWIKTARKKTKIDYEVPLLDIPLLILDKYRDMAPE------------GKLLPMYSNNE 323

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYT 299
             R ++++    G+      H  RH++AT + LS+G  L ++  +LGH R+STTQIY 
Sbjct: 324 LNRTLKRIAAICGIERKLVFHCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYA 381


>gi|332522639|ref|ZP_08398891.1| site-specific recombinase, phage integrase family [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332313903|gb|EGJ26888.1| site-specific recombinase, phage integrase family [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 358

 Score = 98.9 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 59/314 (18%), Positives = 122/314 (38%), Gaps = 48/314 (15%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            +S +T + YE    +  I+      + I++   +    + I  F+          R++K
Sbjct: 76  NVSLVTWKKYEYTLSKIRIYFRDAKIKNISVSQYQ----SAINQFLED-----YSWRTVK 126

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
              + I+  LK      I  +      +  +          EK  L + +   L     T
Sbjct: 127 MFNTHIRQCLKVAMHENIVQKDFTTFTKIAQNEKD-----EEKDILQIDEYFDLL--ETT 179

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK---------------G 194
             I  R+   +YL+   GLR SEA+ LT  +I  + ST+ I                   
Sbjct: 180 STIKYRSHFFIYLVAVTGLRFSEAMGLTVNDINFENSTININKTFKVYGPKRGYGPTKNK 239

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
             +RIVP+       + EY         + ++           L+     + +++L    
Sbjct: 240 SSMRIVPIDDRTLSLLSEYVKRFEIKDRVFVE-----------LSNTAVNKTLKKL---- 284

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
            +  +   H+LRH++ ++L+ N  ++  +  ++GH   +TT  +Y+++  +   + + +I
Sbjct: 285 -VGRNVHMHSLRHTYVSYLIKNNINVVQVSKLIGHTNPNTTLTVYSHLFKQQEIESVNQI 343

Query: 314 YDQTHPSITQKDKK 327
            +    ++ QK KK
Sbjct: 344 NNLFRSNLGQKTKK 357


>gi|315268238|gb|ADT95091.1| integrase family protein [Shewanella baltica OS678]
          Length = 318

 Score = 98.9 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 93/248 (37%), Gaps = 38/248 (15%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILNMRNLKKSN 123
           Q++      + + RR +KI  ++    L+ ++     L        E  + +   +K   
Sbjct: 99  QVNTNFYLNYRA-RRLEKITPKTANLELTRLQGVYSVLIAAGEYAGEHPLKSAPPIKLQA 157

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
                L + Q   L+             +      I+ +    G R SEA +LT   ++D
Sbjct: 158 KDQSFLTKPQIAQLL-----------ALLSGEMLLIVKICLSTGARWSEAQNLTSSQLLD 206

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           D+    I  K  K R +P+    R  +             N    LF     + L     
Sbjct: 207 DRINF-INTKNGKNRTIPITREFRAEL------------PNGNGRLFADCYHQFL----- 248

Query: 244 QRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                 + +  G+  P    +H LRH+FA+H + NGG++ ++Q ILGH  +  T  Y ++
Sbjct: 249 -----AVLKSSGIVLPKGQASHVLRHTFASHFVMNGGNILTLQKILGHGSIQMTMRYAHL 303

Query: 302 NSKNGGDW 309
              +  + 
Sbjct: 304 APDHLQEA 311


>gi|194446198|ref|YP_002043286.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194404861|gb|ACF65083.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
          Length = 326

 Score = 98.9 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 56/270 (20%), Positives = 107/270 (39%), Gaps = 38/270 (14%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR---SLS 93
           Q++E  T++F   L   +   I    + ++S   +  + S R    I   ++ R    LS
Sbjct: 74  QNHEHGTKEFNHLLKTISG--IGDMPVSRVSKRALMDYRSTRLRDGISAATINRDMYRLS 131

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
           G+  F K ++  + + +  I  +  L ++N     L + +   L+             + 
Sbjct: 132 GM--FTKLIQLDEFSGQHPIHGLPPLAEANPEMTFLEKSEIEKLL-----------SVLV 178

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
             +  +  L    G R +E  +L P  I   + T  ++ K  K R VP+   + K + E 
Sbjct: 179 GDDLLVALLCLSTGGRWTEVATLKPAQITSCRVTF-LKTKNGKKRTVPISAELEKKVKEE 237

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                F ++                      R ++       +P +   H LRH+FA+H 
Sbjct: 238 ASAKLFKVDYEKF--------------CGILRRVKP-----DIPPNQATHILRHTFASHF 278

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           + NGG++ ++Q ILGH  +  T  Y ++  
Sbjct: 279 MMNGGNIIALQQILGHASIQQTMAYAHLAP 308


>gi|332992877|gb|AEF02932.1| hypothetical protein ambt_06995 [Alteromonas sp. SN2]
          Length = 354

 Score = 98.9 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 92/275 (33%), Gaps = 35/275 (12%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87
           +R  S  T++ Y             Y +       + +   +    + S+     +  +S
Sbjct: 89  QRNWSHTTIRGYT-------QKYNSYIKPNWGHLILNEFKASMFDEWASECL---LSGKS 138

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           +  + + +    K      +   + +  +   K+  + P+  N+ +   +++        
Sbjct: 139 INETRNVLSQIFKRAYFDGVIDSNPVERIERYKQKINEPKPFNKSEIKKILNA------- 191

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-----------GKGDK 196
               + +         +  GLR  E L L  +++  ++    I+                
Sbjct: 192 ----LQSPYKEFFQFAFYTGLRTGELLGLRWEDVDIEKRLAHIRVNITSGKEKVPKTAGS 247

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           IR + L     +A+        F+       P  + ++      G+ +   +   + L +
Sbjct: 248 IRTIELHCLALQALTSIESSKFFNSKRVFIDP--KTMKEYKYADGLRKYTWKPALKKLNI 305

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           P     +  RH++A+ +LS+G +   +   +GH  
Sbjct: 306 PYR-YPYQCRHTYASMMLSSGKNPMWVAKQMGHAD 339


>gi|322376773|ref|ZP_08051266.1| toxin-antitoxin system, toxin component, PIN family [Streptococcus
           sp. M334]
 gi|321282580|gb|EFX59587.1| toxin-antitoxin system, toxin component, PIN family [Streptococcus
           sp. M334]
          Length = 381

 Score = 98.9 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 50/309 (16%), Positives = 101/309 (32%), Gaps = 44/309 (14%)

Query: 33  KLTLQ--SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL-- 88
           K T++  +Y+   ++  + +  Y     T   I+Q+S     A+  K   Q + +R +  
Sbjct: 82  KNTVKPTTYQNVKKKLDVMIDLY----FTDMKIQQISV----AYCQKVAIQ-LSNRYILY 132

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS--NSLPRALNEKQALTLVDNVLLHTS 146
               S I    KY     I   + +  +   K            +++    +     +  
Sbjct: 133 ANYYSVISRIFKYTTSIDIIKSNPLDKIIKPKNRPLKGKENYYTKQELTEFLKVYKANCK 192

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---------------Q 191
                    +    +LL   GLR  EA+ L   ++  +   L I                
Sbjct: 193 -------PVDYTFFHLLAFSGLRTGEAIGLMWSDVDFENKRLSISRTAVVVNKKQTVQDP 245

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL------NIQLPLFRGIRGKPLNPGVFQR 245
                 R++ L       +  +      +         +    +F    G  ++P   + 
Sbjct: 246 KTKMSKRVITLDDETLNVLKFWKRQQIKEYFRASVPYKHDSNYIFTNSFGGWISPSAVKE 305

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
            +R+           T H  RH+ A+ L   G   + I   LGH  + TT  +YT++N  
Sbjct: 306 RLRRFFYEHKDVKKITPHGFRHTHASLLFEAGVTAKIISDRLGHNNVQTTLDMYTHINDN 365

Query: 305 NGGDWMMEI 313
              + + ++
Sbjct: 366 QRVEVVDQL 374


>gi|296275196|ref|ZP_06857703.1| putative integrase [Staphylococcus aureus subsp. aureus MR1]
          Length = 403

 Score = 98.9 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 55/288 (19%), Positives = 108/288 (37%), Gaps = 38/288 (13%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKK 121
           I ++++T ++  I     +      ++  +  I+S  KY  K   +   S +  +   KK
Sbjct: 113 ISKITHTYLQN-IINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKK 171

Query: 122 SNSLPR-------ALNEKQALTLVDNVLLHTSHETKWIDARNS----AILYLLYGCGLRI 170
           + +           L + +   L+        H+      RN     A++      G+RI
Sbjct: 172 AQTRNELQAKRNNYLEDSEVKELLQCFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRI 231

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRI------------------------VPLLPSV 206
            E L++   NI  +  TL I G  + +                             +  +
Sbjct: 232 GELLAIKTDNINIENKTLEIDGTINWVTDAETGAFGVKETTKTSKSYRTIGLTTQSINLL 291

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           +K +LE      ++     +  +F    G P++       I++      +    T HTLR
Sbjct: 292 KKLMLENKKENQWNAKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLR 351

Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           H+  + L   G +L++IQ  +GH    TT +IYT++  +   D M ++
Sbjct: 352 HTHISTLAQLGINLKAIQDRVGHSDYKTTLEIYTHITDQMSKDMMNKL 399


>gi|290891631|ref|ZP_06554685.1| hypothetical protein AWRIB429_2075 [Oenococcus oeni AWRIB429]
 gi|290478745|gb|EFD87415.1| hypothetical protein AWRIB429_2075 [Oenococcus oeni AWRIB429]
          Length = 347

 Score = 98.9 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 52/307 (16%), Positives = 111/307 (36%), Gaps = 27/307 (8%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L    +NW   L      S  T+  Y         +L           T++  + +  + 
Sbjct: 61  LSDYFENW--YLTYRVNRSNQTIYQYRDTLHTIKKYLPTM--------TLKSFTRSNFQT 110

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK-SNSLP---RAL 129
           FI+    +   ++++++    I + LK     ++  +   + +  +   +  +P   + L
Sbjct: 111 FINNF-GKDHAEKTVQKRKGQISAALKDALAEELIIKDPTIRIGLVYNNATKVPIENKYL 169

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
              +A  L+D+ + + S            ++      G R  E  +LT  +I   +  + 
Sbjct: 170 ELNEAEKLIDHCIKNLSRGN--------FMILTGLLSGARFGELRALTDADIDTKKHLIS 221

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           I    DK       P  + +I E      +    +         R   +      + ++ 
Sbjct: 222 ITKAVDKFTNKDKAPKTKNSIREIIMPDKWFEVYSDFKH--NDKRLFDMTSNGINKDLKY 279

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
           L   L +    T H LRH+ A+ LL++   ++ +   LGH  LS T Q+Y+++  +    
Sbjct: 280 LCEKLEI-KHVTFHALRHTHASMLLAHDISMQYVSGRLGHANLSITEQVYSHLLEEKKNQ 338

Query: 309 WMMEIYD 315
             M+   
Sbjct: 339 EEMKAMK 345


>gi|89147584|gb|ABD62651.1| integrase [uncultured bacterium]
          Length = 163

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           +   +     +   G   R          A  E+     F  +     P     R   + 
Sbjct: 47  DEDLEAGFGSVYLPGALERKYS------NAQYEWAWQYVFPSSRISTDPRTGKRRRHHIE 100

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               Q  +++  R   L    T HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT
Sbjct: 101 ESSLQLAVKKAVRAASLTKPATCHTLRHSFATHLLENGSDIRTVQELLGHKDVSTTMIYT 160

Query: 300 NV 301
           +V
Sbjct: 161 HV 162


>gi|76787505|ref|YP_330684.1| prophage Sa05, site-specific recombinase phage integrase family
           protein [Streptococcus agalactiae A909]
 gi|76562562|gb|ABA45146.1| prophage Sa05, site-specific recombinase, phage integrase family
           [Streptococcus agalactiae A909]
          Length = 388

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 94/272 (34%), Gaps = 27/272 (9%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKR----SLSGI-KSFLKYLKKRKITTESNILNMR 117
           + +L+   I++ I+K   +              +  + K  L+Y    +    +    + 
Sbjct: 110 LDKLTTPLIQSIINKLADKTNKGERKAYLHYDRIHALNKRILQYGVIMQAIPFNPAREVI 169

Query: 118 NLKKSNS----LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
             + +        +     +  T  +   L+   + K+       +   L   G RI+EA
Sbjct: 170 LPRNTKKANTKRVKHFENDELRTFFNY--LNNLDKNKYRYFYEVTLYKFLLATGCRINEA 227

Query: 174 LSLTPQNIMDDQSTLRIQGK------------GDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           L+L   +I  D + + I                   R + +       + +Y      + 
Sbjct: 228 LALNWSDIDLDNAVVHITKTLNYKQEINSPKSKSSYRDIDIDSRTVTMLKQYRRRQIQEA 287

Query: 222 NL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
                 +  +F     K  N    Q  +R   +   +  +   H  RH+ A+ LL+ G  
Sbjct: 288 WKLGRSETVVFSDFIHKYPNNRTLQTRLRTHFKRANVS-NIGFHGFRHTHASLLLNTGIP 346

Query: 280 LRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWM 310
            + +Q  LGH  LS T  IY++++ +N    +
Sbjct: 347 YKELQYRLGHSTLSMTMDIYSHLSKENAKKAV 378


>gi|331084818|ref|ZP_08333906.1| transposase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330410912|gb|EGG90334.1| transposase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 396

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/300 (15%), Positives = 105/300 (35%), Gaps = 42/300 (14%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103
           RQ+L  +     + + ++ I  +  ++ + +  +   +    +++      +K+      
Sbjct: 107 RQYL--MNALKNDPLGMRAIDTVKQSDAKEWAIRMSEKGYAYKTIDNYKRSLKASFYMAI 164

Query: 104 KRKITTESNILNMRN--LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161
           +     ++      +  L+        L  +Q   L+  +      E   + ++    + 
Sbjct: 165 QDDCIRKNPFEFTLSDVLENDTEQKVILTPEQEERLLAFM------EKDKVYSKYYDEVV 218

Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI----------------QGKGDKIRIVPLLPS 205
           LL   GLRISE   LT  +I      L I                    +  R +PL   
Sbjct: 219 LLLETGLRISEFCGLTT-HIDMQNKILNIDHQLLKDSEIGYYIETPKTKNGKRELPLTER 277

Query: 206 VRKAILEYYDLC---PFDLNLNIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYL 254
             +AI             +       LF    G P        +  G+ ++Y +     L
Sbjct: 278 AYQAIQRILKNRGKAQPLIVGGYSNFLFLNREGLPKVAGNYEGMVRGLIKKYNKYHTDKL 337

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
               + T H+ RH++ T++ + G +  ++Q ++GH  ++ T   Y +   ++    +  +
Sbjct: 338 ---PNITPHSFRHTYCTNMANRGMNPNTLQYLMGHANITMTLGYYAHGTFQSAKAELERL 394


>gi|295134620|ref|YP_003585296.1| transposase [Zunongwangia profunda SM-A87]
 gi|294982635|gb|ADF53100.1| putative transposase [Zunongwangia profunda SM-A87]
          Length = 392

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 58/286 (20%), Positives = 116/286 (40%), Gaps = 26/286 (9%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEIRAFISKRRTQ-KIGDRSLKRS 91
           TL++Y         +L  Y +EK TI  I  +Q+ Y     F    R    + +  + + 
Sbjct: 122 TLKNYTTT----ETYLKNYLKEKRTISDIYLKQIDYQFTLGFERFLRDLPSLSNNGVMKH 177

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           +   K  +   +      ++     + L+  +     L++ +   + +     ++     
Sbjct: 178 MERFKKLMHLSEDLDWIEKNPTKRFK-LRFHHVDMVYLSKAELQKIKEKKFKRSTL---- 232

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRK 208
             + N  I       GL   + L L  ++I   +D +  +  +       +   L    +
Sbjct: 233 --SINRDIFVFCCYTGLPYGDVLELKKKHIQIGIDGKKWIYTRRMKTNTLLRIPLLEEAE 290

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            ILE Y   P   N +I LP++   +          +Y+R++ + + +    + H  RH+
Sbjct: 291 RILEKYKEHPRVSNSDILLPVYSNQKT--------NQYLREITKAVKINKELSFHAARHT 342

Query: 269 FATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           FAT + L+NG  + ++  +LGH +LSTTQIY  V      + M ++
Sbjct: 343 FATTVTLANGVPIETVSKLLGHTKLSTTQIYARVIDSKISNDMDKL 388


>gi|212695061|ref|ZP_03303189.1| hypothetical protein BACDOR_04599 [Bacteroides dorei DSM 17855]
 gi|212662377|gb|EEB22951.1| hypothetical protein BACDOR_04599 [Bacteroides dorei DSM 17855]
          Length = 410

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/290 (17%), Positives = 109/290 (37%), Gaps = 26/290 (8%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEIRAFISKRRTQKIG-DRSLKR 90
            +L+SY      +   L+ + E++  +  I  ++L+   I  F    R +K   + ++  
Sbjct: 128 KSLRSYWKYCVVY-KHLSEFVEKRYKVSDIALKELTPAFITDFELFLRVEKNHCNNTVWS 186

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +   +  +       +          ++ K  +    L + +   L++      S+E  
Sbjct: 187 YMMPFRKIIYMAVNNGLLQRDPFFAY-SITKEETKRGFLTQDEITLLINGTFKKKSYELI 245

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRIQGKGDKIRIVPLLPSVR 207
                   +       GL  ++  +LT  N     D    L  + +   +     L  V 
Sbjct: 246 ------RDLFIFCIFTGLSWTDMANLTETNLQTSFDGHLWLNTKRQKTGVETNIRLLDVA 299

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           K I+E Y     D  L + +P +   +            I+ + +  G+  + T H  RH
Sbjct: 300 KHIIEKYRDMAPDGKL-LPVPCYNNCKNS----------IKAIAKRCGIEKNVTWHMSRH 348

Query: 268 SFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           ++AT   LSN   + ++  +LGH  + TTQIY  + ++     M ++  +
Sbjct: 349 TYATTVCLSNDVPIETLSKMLGHRSIRTTQIYAKITAEKMSRDMEKLAQR 398


>gi|167762114|ref|ZP_02434241.1| hypothetical protein BACSTE_00465 [Bacteroides stercoris ATCC
           43183]
 gi|167765046|ref|ZP_02437167.1| hypothetical protein BACSTE_03440 [Bacteroides stercoris ATCC
           43183]
 gi|167697715|gb|EDS14294.1| hypothetical protein BACSTE_03440 [Bacteroides stercoris ATCC
           43183]
 gi|167700073|gb|EDS16652.1| hypothetical protein BACSTE_00465 [Bacteroides stercoris ATCC
           43183]
          Length = 401

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 96/257 (37%), Gaps = 14/257 (5%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKK 121
              L++  + +F    + +     ++ + +  +K  +     ++    +        +K 
Sbjct: 144 FSDLTFEFVSSFEYFLQQKGYHTNTIAKHMKHLKRHINIAINKEYIEIQKYAFRKYKIKT 203

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
             +    L  ++   L     L  + +   +     A L+  Y  G+R S+  +L+ +NI
Sbjct: 204 VENKHTHLVPEELEQL---ERLSLTDKHMKLQKSLDAFLFCCYA-GMRYSDFTNLSKKNI 259

Query: 182 -MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
              +Q T  I         V L   +  A      L  +  NL     L           
Sbjct: 260 VDINQETWLIYKSVKTGTEVRLPLYLLFAGKGIVILNKYRNNLEDFFRLRDN-------- 311

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
               + +  + +  GL    + HT RH+ AT L+ NG ++ ++Q +LGH  + TTQ+YTN
Sbjct: 312 SNINKDLIIIAKLAGLSKKISFHTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTN 371

Query: 301 VNSKNGGDWMMEIYDQT 317
           +        + +I    
Sbjct: 372 IMDMTIVHDLEKIKQAA 388


>gi|325856171|ref|ZP_08171996.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483642|gb|EGC86609.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 422

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 108/277 (38%), Gaps = 26/277 (9%)

Query: 50  LAFYTEEKITIQTIR--QLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRK 106
           +  Y  E++ ++ IR   L Y  I       ++++ +   +++ ++  ++  +   +++K
Sbjct: 144 IEAYLRERLGLEDIRYSSLDYGFIEGMDFYLKSERNLSLATIQVAVIFLRKLIGIGQQKK 203

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
                   + +  +  +   R L  ++   ++   ++    E          +       
Sbjct: 204 YIRIDPFADYKA-ELPHRTRRYLTTEELQRVLQTPIIDRQFERA------RQLFLFCSFT 256

Query: 167 GLRISEALSLTPQNIM---DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           GL   +   L P++I+   D    +RI + K D   I+PLLP  ++ +  Y        +
Sbjct: 257 GLARVDMQRLKPKHIIHNADGTEEIRIKRQKTDVEAIIPLLPIAKQILSLYI------KD 310

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLR 281
                 +F       L           + +   +    T H  RH+F+T   LSNG  + 
Sbjct: 311 KKADELIFPN-----LTIRKASFACVNIGQICRIEKGLTFHMARHTFSTTICLSNGISME 365

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           ++  +LGH  + TTQIY  +      + M  + D+ H
Sbjct: 366 TLSKMLGHSNIGTTQIYGKITDHKIQEDMTALTDREH 402


>gi|229008693|ref|ZP_04166093.1| Phage integrase [Bacillus mycoides Rock1-4]
 gi|228752546|gb|EEM02174.1| Phage integrase [Bacillus mycoides Rock1-4]
          Length = 381

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 119/333 (35%), Gaps = 46/333 (13%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           EI    L    ++WL+ L  +  +SK T   Y    R     L  Y +       +++L 
Sbjct: 57  EITPTSLKHYLRDWLK-LFKQDNVSKNT---YILHERNIEKHLIPYFQN----INLKELK 108

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM----RNLKKSN 123
               + FI+    Q    R+++     + + +K     K    +    +    RN K+ +
Sbjct: 109 PMMYQKFINSLTDQGYSKRTVQIIHGTMNNAMKKAVSLKKIESNPCEEVVISNRNNKERD 168

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
            L    +E   L L           +   +        +L   G+R  EA +L  ++I  
Sbjct: 169 GLKYMRSEDIPLFL---------KASYQYNYIYYIFFKVLLNTGMRKGEAAALQWKDINL 219

Query: 184 DQSTLRIQGKGDKI-----------------RIVPLLPSVRKAILEYYDLCP------FD 220
            + T+ I    D                   R + +  ++   +L +            D
Sbjct: 220 KEHTITISKTLDFTAKTKEELFGDTKTFTSKRTIMIPKNLADELLAHKKWQNANKLVLQD 279

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
              +    +F  + GK L          ++ +   LP     H+LRH+ A  LL +G  +
Sbjct: 280 AYEHELDLVFSRVDGKFLPKSTLFNAFSRILKKANLPR-LEIHSLRHTHAVLLLESGASM 338

Query: 281 RSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMME 312
           + IQ  LGH  +  T  +Y++++ K   D + +
Sbjct: 339 KFIQDRLGHKSIEITSNVYSHISDKINKDSISD 371


>gi|226322964|ref|ZP_03798482.1| hypothetical protein COPCOM_00736 [Coprococcus comes ATCC 27758]
 gi|225208531|gb|EEG90885.1| hypothetical protein COPCOM_00736 [Coprococcus comes ATCC 27758]
          Length = 399

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/316 (13%), Positives = 109/316 (34%), Gaps = 48/316 (15%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSL 88
           G+   T+  Y               ++    + I  +  ++ + ++   +  +K    S+
Sbjct: 97  GVRPTTVAGYGTVINLL-------KKDPFGKRRIDTVRISDAKCWLIHLQQVEKKSYSSI 149

Query: 89  KRSLSGIKSFLKYLKKRKITTESNIL--NMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
                 ++   +      +  ++      M  +   +    A++  +    +  V     
Sbjct: 150 HSIRGVLRPVFQLAVDDDLIRKNPFQFQLMEVVVNDSVTREAISRAEERKFLQFVKDDAH 209

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---------------- 190
               +        +Y+L+  GLRISE   LT  +I   + T+ I                
Sbjct: 210 FSKYYEG------IYILFKTGLRISEFCGLTISDIDFKEHTINIDHQLQKKSKIGYYIQE 263

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFD------------LNLNIQLPLFRGIRGKPL 238
                  R +P+   V +   +  +                 L+ +    +   +  +  
Sbjct: 264 TKTTSGTRKIPMTADVEECFRKIIEKRNPPKAEPMVDGKSGFLHFDKNESICYSLHWEHY 323

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QI 297
              + Q+Y    +  + +    T H  RH++ +++  +G + +++Q ++GH  +S T   
Sbjct: 324 FQHIVQKYNNTYKVQMPV---ITPHVCRHTYCSNMAKSGMNPKALQYLMGHSDISVTLNT 380

Query: 298 YTNVNSKNGGDWMMEI 313
           YT+VN ++  + +  I
Sbjct: 381 YTHVNLEDAREEVARI 396


>gi|89147490|gb|ABD62605.1| integrase [uncultured bacterium]
          Length = 163

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 53/130 (40%)

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           E L              R Q          L      A  E+     F        P   
Sbjct: 33  ELLQKHLIQTRRIHDHDRTQDTAGVFMPNALDRKYPNAGKEWKWFWVFPSFKLSVEPRTG 92

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
            +R     P  +QR I+       +    T+HTLRHSFATHLL +G DLR+IQ +LGH  
Sbjct: 93  IVRRHHRYPDSYQRSIKLASTAADITKRVTSHTLRHSFATHLLESGTDLRTIQELLGHSD 152

Query: 292 LSTTQIYTNV 301
           + TT IYT+V
Sbjct: 153 IKTTMIYTHV 162


>gi|330878636|gb|EGH12785.1| Phage integrase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 463

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/298 (16%), Positives = 104/298 (34%), Gaps = 34/298 (11%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT--QKIGDRSLKRSL 92
           T++ Y    + ++ F       + +            R  +  RR+  ++I  RS     
Sbjct: 13  TVKIYRAAAKSYVKFFGECLACETSH-----------RDMLDWRRSVLERITKRSWNTYS 61

Query: 93  SGIKSFLKYLKKRKITT--ESNILNMRNLKKSNSLPRALNEKQALT------LVDNVLLH 144
           S +++  +Y  +  +     + + + R +          N+           LV   L  
Sbjct: 62  SHLRTVYRYAMEHGLVELKINPLKDTRVIPTKRPKKTVENDVIVRARNWLRFLVQEELST 121

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204
                         +    Y  G+R++  L L  +N+   Q  +R++G+ +K     ++P
Sbjct: 122 GKRSEITPAWFWLTVFETFYYTGIRLNALLCLRYENVDLGQRLIRVRGETEKTHREFMIP 181

Query: 205 SVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPG------VFQRYIRQLRRYLG 255
            +   +L+++ L     N     P   +F   R               +   ++L    G
Sbjct: 182 -IPDGLLQHFVLIMDTANRVGFAPTDQIFNVNRYSGYYRRESMNSDQVEAMYKKLTAMAG 240

Query: 256 LPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                T H  RH+ A+ L+     ++   +++L H  ++TT  Y   +     D M E
Sbjct: 241 --TRMTPHRFRHTIASELMKQPERNIHITKNLLNHSNIATTMEYIEPDYDLMRDVMNE 296


>gi|302346775|ref|YP_003815073.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302150547|gb|ADK96808.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 422

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/319 (17%), Positives = 124/319 (38%), Gaps = 40/319 (12%)

Query: 14  LLKERQNWLQNLEIERG------LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR--Q 65
           L++E Q +++    E+       ++K T  +Y          +  Y  E++ ++ IR   
Sbjct: 110 LMEEAQLFIE----EKRPCVGITVAKPTFTNYIY----AAQLIESYLRERLGLEDIRYSS 161

Query: 66  LSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L Y  I       ++++ +   +++ ++  ++  +   +++K       ++ + ++  + 
Sbjct: 162 LDYGFIEGMDFYLKSERNLSLATIQVAVIFLRKLIGIGQQKKYIRIDPFVDYK-VELPHR 220

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-- 182
             R L  ++   ++   ++    E          +       GL   +   L P++I+  
Sbjct: 221 TRRYLTTEELQRVLQTPIIDKQFERA------RQLFLFCAFTGLARVDMQRLKPKHIIRN 274

Query: 183 -DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
            D    +RI + K D   I+PLLP   + +  Y        +      +F       L  
Sbjct: 275 ADGTEEIRIKRQKTDVEAIIPLLPIANQILSLYI------KDKKADDLIFPN-----LTI 323

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYT 299
                    + +   +    T H  RH+F+T   LSNG  + ++  +LGH  + TTQIY 
Sbjct: 324 RKASFACVNIGQICRIDKGLTFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYG 383

Query: 300 NVNSKNGGDWMMEIYDQTH 318
            +      + M  +  + H
Sbjct: 384 KITDHKIQEDMTALTHREH 402


>gi|221133384|ref|ZP_03559689.1| Tyrosine recombinase xerC [Glaciecola sp. HTCC2999]
          Length = 383

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 94/277 (33%), Gaps = 19/277 (6%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           +++     R          +     Q +  +   E+  F +     ++    +   +  +
Sbjct: 115 IKTRLRTCRNIESMWRIRIQPTFGHQRLDDIKVLELERFQTSLIEMQLSGSHVTGHIKLL 174

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
                   + ++ T++    +  +K  N   R L+  +    +  ++ H           
Sbjct: 175 SRMFTLAIQWELITKNPCDKVEYMKFDNQKERFLSSDEQTRFISVLMEHPER------PV 228

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILE 212
           N  +++LL   G+R   A SL    I  ++  + +     K  K   + L  +    +  
Sbjct: 229 NLLMIFLLV-TGVRSGVAKSLRWSWINMEKQIITVPPSIAKNKKQNTIFLNTTAMDILKR 287

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                   L       +F       L    F++  +   +   +  S   H LRH+F ++
Sbjct: 288 --------LAGINPTYVFINP-MTQLPYNDFKKSFKTALKAAQISDSVRIHDLRHTFCSN 338

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           L+SN   L S+Q +  H   STT  Y  V+     + 
Sbjct: 339 LVSNNVSLASVQQLANHACYSTTLRYAKVSQDTLREA 375


>gi|89147648|gb|ABD62683.1| integrase [uncultured bacterium]
          Length = 163

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/111 (32%), Positives = 50/111 (45%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            G G       L    + A  E+     F  +     P    IR    +    Q  ++  
Sbjct: 52  HGYGSVYLPFALERKYQNANREWGWQYVFPSDRLSADPRGGQIRRHHRDERGLQSAVKAA 111

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            R   +    + HT RHSFATHLL NG D+R++Q +LGH  + TT IYT+V
Sbjct: 112 VRAAEIAKPASCHTFRHSFATHLLENGYDIRTVQELLGHTNVKTTMIYTHV 162


>gi|226945708|ref|YP_002800781.1| phage integrase [Azotobacter vinelandii DJ]
 gi|226720635|gb|ACO79806.1| phage integrase [Azotobacter vinelandii DJ]
          Length = 415

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/311 (15%), Positives = 106/311 (34%), Gaps = 30/311 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           Q ++ +   E   +  T+  Y   T+              T   ++ +    I ++ SK 
Sbjct: 8   QAYIDD--HELRPASKTI--YRAATKALTRHFG-------TTIDVQTIDRRSILSWRSKV 56

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN-ILNMRNLKKSNSLPRALNEKQALT- 136
             + +  RS     + +++   Y  +  +  +         ++      + +        
Sbjct: 57  LAKGLAKRSWNTYSTHLRTIWGYAIEYGLLPQQPNPFKKTAVRPPKRASKTVASDAIHRA 116

Query: 137 ------LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
                 LVD                  A   + Y  G+R++  L L  Q++  D+  + I
Sbjct: 117 RRWLDSLVDEERCTGRRSKITPAWFWLATFEMFYYTGIRLNALLCLRVQDVDWDRQLILI 176

Query: 191 QG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-----LNPGV 242
           +G   K  +   VP++  +   I E  D       +            +      +N   
Sbjct: 177 RGDTEKTHREYQVPIVEGLAPHIRELLDEAKRAGFVPTDQLFNVNRFSRHYRRSEMNTDQ 236

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIYTNV 301
            +   R+L   +G+    T H  RH+ A+ L+     ++   +S+L H  ++TT  Y  V
Sbjct: 237 VEAMYRKLIEKIGV--RMTPHRFRHTLASDLMRQPERNIHLTKSLLNHSNIATTMGYIEV 294

Query: 302 NSKNGGDWMME 312
           +  +  + + E
Sbjct: 295 DYDHMREVLHE 305


>gi|332764479|gb|EGJ94712.1| integrase [Shigella flexneri K-671]
          Length = 262

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 85/248 (34%), Gaps = 27/248 (10%)

Query: 84  GDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
              +    LS IK+ L+  ++  K+  ++ I+ +   K      R L   +A  L+D   
Sbjct: 17  SVATKATHLSFIKALLRAAEREWKMLDKAPIIKVPQPKNKR--IRWLEPHEAQRLIDEC- 73

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRI 199
                          +++      GLR S  ++L  Q I   +    I     K ++   
Sbjct: 74  ----------PEPLKSVVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEESKSNRAIG 123

Query: 200 VPLLPSVRKAI------LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           V L  +  + +         +     +            +R    +     +      R 
Sbjct: 124 VALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAWKA---ALRR 180

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+      H LRH++A+ L+  G  L  +Q + G   +   + Y ++   +  +   +I
Sbjct: 181 AGID-DFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARQI 239

Query: 314 YDQTHPSI 321
               +PS+
Sbjct: 240 DSILNPSV 247


>gi|89147681|gb|ABD62699.1| integrase [uncultured bacterium]
          Length = 163

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/111 (34%), Positives = 51/111 (45%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            G G       L     KA  E+     F             +R   L+  V QR ++  
Sbjct: 52  NGTGFVELPDALREKSPKAAREWRWQWVFPATRRYVDATSGELRRHHLHETVLQRAVKSA 111

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               G+    + HT RHSFATHLL +G D+R+IQ +LGH  + TT IYT+V
Sbjct: 112 VLAAGVTKLASCHTFRHSFATHLLESGYDIRTIQKLLGHRDVRTTMIYTHV 162


>gi|114566278|ref|YP_753432.1| site-specific recombinase XerD-like protein [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|114337213|gb|ABI68061.1| Site-specific recombinase XerD-like protein [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 321

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 104/274 (37%), Gaps = 26/274 (9%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102
            R F  F      ++    T   +       +I K+ T+     +    ++GIK FL +L
Sbjct: 35  LRHFDRFCVQQEIKEPVFTTDNAV------KWIQKKGTEG--TTTHYSRVNGIKQFLIFL 86

Query: 103 KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
            ++         +++  K +   P    +         V  + S + +    +   +  L
Sbjct: 87  SRKGY-DVFITRDIK-FKPTEFQPHIYTDADIRRYFHAVDTYESAQNRKNAIQYPVLFRL 144

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           LY CG RI+E L +  +++  +   +++ + K D  R + L   +R  + ++ + C + L
Sbjct: 145 LYCCGTRINETLGIRKKDVDLENGIIKLFETKNDCERYIILGDDLRVLMKQFAEKCFYLL 204

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-----LSTTAHTLRHSFATH---- 272
               +  +F    G  ++  V     R   +  G+P          H  RH+ A      
Sbjct: 205 --GDEDYIFTTSNGSRISGDVLYEVHRLFLQQAGIPYLGGGKGPRVHDWRHTMAVRSFKQ 262

Query: 273 LLSNGGDLRS----IQSILGHFRLSTTQIYTNVN 302
           ++  G D+      + + LGH  +  T+ Y  + 
Sbjct: 263 MIDAGMDMYVSLPILSTYLGHKTIFATERYVRLT 296


>gi|306823229|ref|ZP_07456605.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|309801603|ref|ZP_07695724.1| site-specific recombinase, phage integrase family [Bifidobacterium
           dentium JCVIHMP022]
 gi|304553861|gb|EFM41772.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|308221735|gb|EFO78026.1| site-specific recombinase, phage integrase family [Bifidobacterium
           dentium JCVIHMP022]
          Length = 413

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 93/278 (33%), Gaps = 37/278 (13%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           I    ++ ++   IR  +     +++   +LK     +K  L   +  ++        ++
Sbjct: 108 IGHVRLKDITPEHIRHCMRTL-GERLASSTLKDHYVSLKMVLDQAELEELIPIDPCRRVK 166

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN-----SAILYLLYGCGLRISE 172
             +   ++PR L+E+Q   L+  V    +      D  +       +  L +  G+R  E
Sbjct: 167 PPRVERAVPRILDEEQPGRLIAAVADTKTARRGPADMDDMTEMWMLLFELAFAAGMREGE 226

Query: 173 ALSLTPQNIMDDQST--LRIQG----------------------------KGDKIRIVPL 202
             +L P  +        + +Q                                K R    
Sbjct: 227 RYALMPYELERRHGVPGIHVQQQIQAYGLPDKAVIPNWLDASHLYGILWLTTPKTRAANR 286

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
              + +++          L++     +F   RG P+       + R+  +  GLP     
Sbjct: 287 FVPIGESLWARLWARIHRLDIAPHGLVFTNQRGNPIRETTEAYHWRKALQAAGLPQ-VRI 345

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
           H+ RH  AT    +G    +  +I+GH  L  T  YT+
Sbjct: 346 HSARHWTATMTAQSGMPDDARTAIMGHTSLDMTAHYTH 383


>gi|223369774|gb|ACM88757.1| integrase [uncultured bacterium]
          Length = 163

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 37/162 (22%)

Query: 177 TPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY--------------------- 214
             +++  D   + +  GKG K R   L   +  AI +                       
Sbjct: 1   RVKDLDFDNGCITVHDGKGGKSRNSLLPTGLIAAIKQLIDRVLVIQQEDNAQGVGPSLPF 60

Query: 215 --------------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLS 259
                          +  F  +     P    +    L+  V ++ ++   +  G+    
Sbjct: 61  ALDRKYPSAYRQPAWMFIFPSSTLCNHPYSGKLYRHHLHDSVARKALKAAVQKAGILNKR 120

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|89147576|gb|ABD62647.1| integrase [uncultured bacterium]
 gi|89147610|gb|ABD62664.1| integrase [uncultured bacterium]
          Length = 163

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/110 (32%), Positives = 53/110 (48%)

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G G       L   +  A  E+     F  +     P     +   +  G+ Q  +++  
Sbjct: 53  GFGSVHLPFALNRKLPNAAREWAWQYVFASSRISLDPRSGKRQRHHIAEGILQNALKRAV 112

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              G+      H+LRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 113 DAAGIVKRANCHSLRHSFATHLLGNGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|330910587|gb|EGH39097.1| putative bacteriophage integrase [Escherichia coli AA86]
          Length = 345

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 91/229 (39%), Gaps = 29/229 (12%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + S++  +     ++    S + S F +  +  + +  + + NMR    +      L  +
Sbjct: 119 YFSEKWKKGASPVTVNLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q + L+         + K  D   + ++ +    G R  EA++LT   +   + T  ++ 
Sbjct: 179 QIVELL--------ADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITF-VRT 229

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R +P+   + + I+       F                       FQ      + 
Sbjct: 230 KGKKNRSIPISKELYEEIMALDGFNFF-------------------TDCYFQFLSVMEKT 270

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            + LP     H LRH+FA H + +GG++ ++Q ILGH  +  T  Y ++
Sbjct: 271 SIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319


>gi|223369782|gb|ACM88761.1| integrase [uncultured bacterium]
          Length = 163

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRH 267
           A  +   +  F  +     P    +    L+  V ++ ++   +  G+     T HT RH
Sbjct: 69  AYRQPAWMFIFPSSTLCNHPYSGKLCRHHLHDSVARKALKAAVQKAGILNKRVTCHTFRH 128

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 129 SFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|329314680|gb|AEB89093.1| Phage integrase [Staphylococcus aureus subsp. aureus T0131]
          Length = 345

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 112/278 (40%), Gaps = 18/278 (6%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           + T + Y    +          + KI    + +++    + FI+    +   + +++++ 
Sbjct: 74  ENTYRHYRNALQH-------IQKHKIGKMELSKINRQVYQKFINDYSKEHAKE-TIRKTN 125

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             I+S L       +  ++    + N K         +E++    V    +   H  K  
Sbjct: 126 GAIRSALDDALYDGLIFKNPAYKV-NYKAGKP---TKSEQEKFISVTEYEILKDHVRKKR 181

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
              + A+  ++   G R+S A ++  ++I   ++T+ I  +        +  S+ K+ ++
Sbjct: 182 TRSSLALF-IMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYI--SIAKSDMK 238

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +         ++    +F+      +N       ++   R   +P+  T+H LRH+  ++
Sbjct: 239 HIMDVISTFAISYDGYIFKEAGSI-INLHAINNALKSACRVNNIPI-ITSHALRHTHCSY 296

Query: 273 LLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDW 309
           LL+ G  +  I   LGH  ++ TT +Y+++  +   + 
Sbjct: 297 LLAKGVSIHYISKRLGHKNIAITTSMYSHLLEEKFNEE 334


>gi|257426155|ref|ZP_05602571.1| phage integrase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257437048|ref|ZP_05613089.1| phage integrase [Staphylococcus aureus subsp. aureus M876]
 gi|257271063|gb|EEV03232.1| phage integrase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257283642|gb|EEV13768.1| phage integrase [Staphylococcus aureus subsp. aureus M876]
          Length = 349

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 112/278 (40%), Gaps = 18/278 (6%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           + T + Y    +          + KI    + +++    + FI+    +   + +++++ 
Sbjct: 82  ENTYRHYRNALQH-------IQKHKIGKMELSKINRQVYQKFINDYSKEHAKE-TIRKTN 133

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             I+S L       +  ++    + N K         +E++    V    +   H  K  
Sbjct: 134 GAIRSALDDALYDGLIFKNPAYKV-NYKAGKP---TKSEQEKFISVTEYEILKDHVRKKR 189

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
              + A+  ++   G R+S A ++  ++I   ++T+ I  +        +  S+ K+ ++
Sbjct: 190 TRSSLALF-IMICTGCRVSGARNIKIEHINQVKNTIFIDERKTNTSPRYI--SIAKSDMK 246

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +         ++    +F+      +N       ++   R   +P+  T+H LRH+  ++
Sbjct: 247 HIMDVISTFAISYDGYIFKEAGSI-INLHAINNALKSACRVNNIPI-ITSHALRHTHCSY 304

Query: 273 LLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDW 309
           LL+ G  +  I   LGH  ++ TT +Y+++  +   + 
Sbjct: 305 LLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEE 342


>gi|206975126|ref|ZP_03236040.1| DNA integration/recombination/invertion protein [Bacillus cereus
           H3081.97]
 gi|217959606|ref|YP_002338158.1| DNA integration/recombination/invertion protein [Bacillus cereus
           AH187]
 gi|229138832|ref|ZP_04267413.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BDRD-ST26]
 gi|206746547|gb|EDZ57940.1| DNA integration/recombination/invertion protein [Bacillus cereus
           H3081.97]
 gi|217066212|gb|ACJ80462.1| DNA integration/recombination/invertion protein [Bacillus cereus
           AH187]
 gi|228644748|gb|EEL00999.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BDRD-ST26]
          Length = 369

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 54/312 (17%), Positives = 109/312 (34%), Gaps = 43/312 (13%)

Query: 32  SKLTLQSY-------------ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           SK+TL+ Y             +     +   + ++    I +  + +L+   I+      
Sbjct: 61  SKITLKDYLVQWLEIKKMCVEKSTFSSYSSNITYHIIPSIGMIALHKLNVIHIQKCYKSA 120

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
               + + S+      +K+ L    K+ I + +    +   KK  +  +   E++    +
Sbjct: 121 LDNGVSNNSILLLHRILKTALNLAVKQNIISRNPADFVEIPKKEKTSIQTWTEEEVKRFL 180

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------- 191
            +     S E+++  A   AI       G+R+ E L L  Q++     T+ I        
Sbjct: 181 LH-----SQESRYHIAYLIAI-----TTGMRLGEVLGLRWQDVDFRNHTVTINQTVGGDD 230

Query: 192 ------GKGDKIRIVPLLPSVRKAILEYYDLCPFDL-----NLNIQLPLFRGIRGKPLNP 240
                       R +P+     +AI ++      +             +     G  L  
Sbjct: 231 KVKNTAKTNASKRTIPVPVETIEAIKKHRIQINKEKLRMGSAYQDLDLINCNESGGVLKR 290

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYT 299
             F+R   +      +      H LRH+ AT LL  G + + I   LGH  +S T ++Y+
Sbjct: 291 DAFRRKFYKEINNAKV-KKIKIHDLRHTHATILLKQGVNPKIISERLGHTDISLTLRVYS 349

Query: 300 NVNSKNGGDWMM 311
           +V      + + 
Sbjct: 350 HVLPNMQEEAVK 361


>gi|223369856|gb|ACM88797.1| integrase [uncultured bacterium]
          Length = 163

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/111 (35%), Positives = 55/111 (49%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
            G G+      L    R+A  ++     F   +    P     R   L+    QR + + 
Sbjct: 52  NGYGEVYLPEALSRKYREANRDFVWQWLFPSKVISTDPRSGIERRHHLSEDSLQRAVEKS 111

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              +G     + HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 112 AGEIGNNKRGSCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|330869803|gb|EGH04512.1| Phage integrase [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 482

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/333 (15%), Positives = 115/333 (34%), Gaps = 44/333 (13%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M    LPE+    +L               L   T++ Y   T+ ++ F       + T 
Sbjct: 1   MNTMTLPELTQEYILTH------------DLRPDTVKIYWAATKSYVRFFGDRLASETTH 48

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT--ESNILNMRN 118
           + +      E+         ++I  RS     S +++  +Y  +  +     + +     
Sbjct: 49  RDMLDWRRAEL---------ERISKRSWNTYSSHLRTVYRYAMEHGLVELKVNPLKETHV 99

Query: 119 LKKSNSLPRALNEKQALT------LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           +           +           LV       +           A+  + Y  G+R++ 
Sbjct: 100 IPAKRPKKTVNTDAIVRARNWLNILVQEERATGNRTEITPAWFWLAVFEMFYYTGIRLNA 159

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVP-------LLPSVRKAILEYYDLCPFDLNLNI 225
            + L   +I   Q  +R++G+ +K            L+P +++ +     +     +   
Sbjct: 160 LICLRYADIDLGQRLIRVRGETEKTHREFMIPIPDGLMPHLKRLMDIAQRVGFDPCDQIF 219

Query: 226 QLPLFRGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRSI 283
            +  F G   +P +N    +   ++L    G+    T H  RH+ A+ ++     ++   
Sbjct: 220 NVNRFSGHYSRPQMNADQVEAMYKKLTAMTGV--RMTPHRFRHTIASEMMRQPERNIHIT 277

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +++L H  ++TT  Y     +   D M E+ ++
Sbjct: 278 KNLLNHSNIATTMEYI----EPDYDVMREVMNE 306


>gi|303235824|ref|ZP_07322428.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483966|gb|EFL46957.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 422

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/319 (17%), Positives = 124/319 (38%), Gaps = 40/319 (12%)

Query: 14  LLKERQNWLQNLEIERG------LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-- 65
           LL+E + +++    E+       ++K T  +Y   T+     +  Y  E++ ++ IR   
Sbjct: 110 LLEEARLFIE----EKRPCVGITVAKPTFANYIYATQ----LIEAYLRERLGLEDIRYSL 161

Query: 66  LSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L Y  I       ++++ +   +++ ++  ++  +   +++K        + +  +  + 
Sbjct: 162 LDYGFIEGLDFYLKSERNLSLATIQVAVIFLRKLIGIGQQKKYIRIDPFADYKA-ELPHR 220

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN---I 181
             R L  ++   ++   ++    E          +       GL   +   L P++    
Sbjct: 221 TRRYLTTEELQRVLQTPIIDKQFERA------RQLFIFCAFTGLARVDMQRLKPKHITHN 274

Query: 182 MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
            D    +RI + K D   I+PLLP  ++ +  Y        +      +F       L  
Sbjct: 275 ADGTEEIRIKRQKTDVEAIIPLLPIAKQILSLYI------KDKKADDLIFPN-----LTI 323

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYT 299
                    + +   +    T H  RH+F+T   LSNG  + ++  +LGH  + TTQIY 
Sbjct: 324 RKASFACVNIGQICRIEKGLTFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYG 383

Query: 300 NVNSKNGGDWMMEIYDQTH 318
            +      + M  + D+ H
Sbjct: 384 KITDHKIQEDMTALTDREH 402


>gi|163738156|ref|ZP_02145572.1| phage integrase [Phaeobacter gallaeciensis BS107]
 gi|161388772|gb|EDQ13125.1| phage integrase [Phaeobacter gallaeciensis BS107]
          Length = 392

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 95/296 (32%), Gaps = 27/296 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + +    ER     T + Y      F++         I    +  +   +I     + 
Sbjct: 102 ERFFEAHAKER-CKPSTQKEYRRAIDLFIV-------PAIGSFKVVDVERRDIAELHHRF 153

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALT 136
           R +        R+L  +       +   +  +  +   ++   ++     R LN+ +   
Sbjct: 154 RDKPYQA---NRTLGVLSKMFNLAEIWGLRPDGSNPCRHVPKYREIKRE-RYLNQNELQR 209

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L    +L              A   LL   G R+ E  +L    I D    L        
Sbjct: 210 L--GHVLSEVEREGTETPFVVAAFRLLILTGCRLGEIQTLKWDYITDTGMEL--PDTKTG 265

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R +PL    R  +          L      P     +         Q   R++R   GL
Sbjct: 266 ARRIPLPQPARDVLTH--------LPRTPGNPYVIEGKLAGQYATDLQHPWRRIRARAGL 317

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                 H LRH++A++ +S+G  ++ +  +LGH ++ TT  Y ++          E
Sbjct: 318 A-GVRIHDLRHTYASNAVSSGMPIQMVGRLLGHSQIQTTMRYAHLADDPVRQAAEE 372


>gi|325106214|ref|YP_004275868.1| integrase family protein [Pedobacter saltans DSM 12145]
 gi|324975062|gb|ADY54046.1| integrase family protein [Pedobacter saltans DSM 12145]
          Length = 405

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 64/315 (20%), Positives = 120/315 (38%), Gaps = 33/315 (10%)

Query: 16  KERQNWLQNLEIERGL-------SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           KE  N+      +R L       S  T   Y    ++F  F+               ++ 
Sbjct: 99  KEDPNFFNYC--DRRLEKIKSIVSYRTADIYNIYIKKFEKFIGHRD------FYFSDINT 150

Query: 69  TEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT--ESNILNMRNLKKSNSL 125
           T +  + +  ++T K G+ +   SL  ++ F     K ++     S    ++  K SN  
Sbjct: 151 TLVGDYANYCKKTLKNGNTTTHMSLKILRIFYNDAMKEELIPYAVSPFEKVKIPK-SNVE 209

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
            + LN++Q   L +  L    H     D      L+ +Y  GLRIS+ L L  ++  ++ 
Sbjct: 210 RQYLNKQQLEDLENLDLSQKPHAVVHRDM----FLFSVYAGGLRISDVLLLQWKSYNEET 265

Query: 186 STL-RIQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLN 239
             + ++  K  K     +     + I +Y              L     +F   + K L 
Sbjct: 266 KKITKVIQKTQKQHTFKIGTKAVEIINKYKPKNSNPDAFIFPVLENPERIFGDEQFKSLK 325

Query: 240 PGVFQR----YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
                R    ++ ++   + LP     H  RH+FAT+ L+NG  +  +  +L H  +  T
Sbjct: 326 LRGKIRLGDVHLDKMGEEIKLPFKLHFHLSRHTFATNALNNGMRIEYVSKLLDHSSIRQT 385

Query: 296 QIYTNVNSKNGGDWM 310
           Q+Y  + S+   + +
Sbjct: 386 QVYAKIVSEELDNAV 400


>gi|218662495|ref|ZP_03518425.1| site-specific tyrosine recombinase XerD [Rhizobium etli IE4771]
          Length = 140

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 6/117 (5%)

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLS-TTAHTLRHSF 269
            +    P   +       FR  + + +       R ++ L    GL  S  + H +RH+F
Sbjct: 26  CWLPKMPRQRSRRKAPGCFRPPQRRAICRVRFLPRDLKNLAIRAGLTPSLISPHVMRHAF 85

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
           A+HLL+NG DLR +Q +LGH  +STTQIYT+V  +     + ++    HP   Q  K
Sbjct: 86  ASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER----LQQLVQTHHPLAKQAKK 138


>gi|167721750|ref|ZP_02404986.1| putative bacteriophage integrase [Burkholderia pseudomallei DM98]
          Length = 235

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 99/244 (40%), Gaps = 17/244 (6%)

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEK 132
           +S R    + + ++KR L  + + + +++      E  + + ++  L    S  R ++  
Sbjct: 1   MSARLADGVCESTVKRELRLLSAAINFVRTEHDYPELANPVQSL-GLDGGESRVRWISRS 59

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-- 190
           +A  L+       +             + L    G R +E L+L    +  ++S  R+  
Sbjct: 60  EATALI------LAAGAVARQPHLRNFVRLALSTGCRKNELLALEWHRVDFERSHFRLEC 113

Query: 191 -QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
              K  K R+VPL      A+ +         +      +F    G+ +  G  Q+    
Sbjct: 114 EHTKNGKRRLVPLNSGALLALRD--QRDWVARHCAGSEWVFASSSGRRV--GNLQKGFVA 169

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
                G+  +   H LRH+FA+ L+  G  L  ++ +LGH  ++  + Y +++  +G + 
Sbjct: 170 ACARAGIE-NFRIHDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREA 228

Query: 310 MMEI 313
           + ++
Sbjct: 229 VQKL 232


>gi|29347857|ref|NP_811360.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253572434|ref|ZP_04849836.1| integrase [Bacteroides sp. 1_1_6]
 gi|29339759|gb|AAO77554.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251837849|gb|EES65938.1| integrase [Bacteroides sp. 1_1_6]
          Length = 403

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 98/269 (36%), Gaps = 24/269 (8%)

Query: 46  FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR 105
              F+       I    I +      + F+ K      G   +   L  +   +     R
Sbjct: 138 LRQFIESRGMRDIAFSDITEEFAESFKIFLKKELGHGNGH--VNHCLCWLNRLIYIAVDR 195

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
           ++   + I ++   KK +   + +   +   +++     T      ++      ++  + 
Sbjct: 196 EVLRANPIEDVAYEKKDSPKLKHIGRNELKLIME-----TPMPDPMMELARRTFIFSSF- 249

Query: 166 CGLRISEALSLTPQNI---MDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDL 221
            GL   +   L P++I      +  +RI+  K      +PL P   + +  Y        
Sbjct: 250 TGLAYVDTRRLHPRHIEKSSLGRRYIRIRRAKTGAEAFIPLHPVAEQILELYNT------ 303

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
             + + P+F           +    +  L   LG+  + + H  RHSF T ++++G  + 
Sbjct: 304 -TDNEKPVFPLPV-----RDILWYEVHGLGVALGMKENLSYHMARHSFGTLMMTSGIPIE 357

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           SI  ++GH  +++TQ+Y  V  +     M
Sbjct: 358 SIAKMMGHTNINSTQVYAQVTDQKISSDM 386


>gi|325298924|ref|YP_004258841.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324318477|gb|ADY36368.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 406

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 60/290 (20%), Positives = 108/290 (37%), Gaps = 26/290 (8%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95
           L SY          L  + + K    T   +     + F    R +   D ++      +
Sbjct: 130 LNSYRT--------LKNFNKGKKLNYTFSYIDVEFCKKFEKWMRRKGNNDVTISYQFRSL 181

Query: 96  KSFLKYLKKRKITTES--NILNMRNLK-KSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           ++      + KI +      +  +  +  + +  RAL++   L ++D    H S   ++ 
Sbjct: 182 RAAFNKAIEAKIVSRDKTPFIEYKLSRFNTKTAKRALSKDDILKIIDADCSHASERRQFT 241

Query: 153 DARNSAILYLLYGCG-LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
                 I    Y CG +   +   LT  NI++D+   + Q     I  + L    ++ I 
Sbjct: 242 QD----IFTFSYLCGGISFVDIAHLTGTNIVEDRLLYKRQKTHGSI-NLMLTDRAKQIIQ 296

Query: 212 EY-------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
           +Y         L P   N     P+ +  R   +        +R   + LG+    T + 
Sbjct: 297 KYSYYQRQTGYLFPILHNKRHVTPMQQNNRVHKICHQ-INTELRAFAKELGITAEVTTYV 355

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT-NVNSKNGGDWMMEI 313
            RHSFAT L  +G ++  I   LGH  + TTQIY    +++   D M  +
Sbjct: 356 ARHSFATILKKSGVNIGIISQALGHQDIKTTQIYLSKFDNEQVDDAMKNL 405


>gi|257084908|ref|ZP_05579269.1| phage integrase [Enterococcus faecalis Fly1]
 gi|256992938|gb|EEU80240.1| phage integrase [Enterococcus faecalis Fly1]
          Length = 397

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/296 (17%), Positives = 111/296 (37%), Gaps = 51/296 (17%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKI---GDRSLKRSLSGIKS----FLKYLKKRKITTE 110
           I  + +  L    +   +   + + I        K SL  ++       KY  K+KI  +
Sbjct: 101 IGEKELEALDSDYLEELLFVLKERGIDGESKGYAKNSLQALRQTLNLIFKYCVKKKILHK 160

Query: 111 SNILNMRNLKKSNSL-----------PRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
           + +  +R  K   ++            + L + +  T+++  +++        D   S +
Sbjct: 161 NPMEGVRFPKYQKTVEELKQSLYSVNQKYLTKDELQTVLNYAIVNE-------DLPMSTL 213

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG--------------------DKIRI 199
            ++L+  G RI EAL++ PQ+I  + + +    +                      ++ +
Sbjct: 214 FHVLFYTGCRIGEALAIQPQDIDFENNEILFFKQISKSSKAKDFTVETTKTVSSARRVVV 273

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFR----GIRGKPLNPGVFQRYIRQLRRYL 254
              L    K ++ Y +     ++  I+ P LF     G +G P        +I++     
Sbjct: 274 TAFLMEKLKRLIHYLEEMKKTISFQIEEPYLFVYLGEGKQGIPFRRDYVNTHIKRCVARS 333

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           G+      H  RH+  + L ++      ++  LGH   ST++IY ++ S      +
Sbjct: 334 GINKPFHTHLTRHTMTS-LCASYCSWDVLKERLGHTDKSTSEIYRHITSTEKVSPL 388


>gi|299822665|ref|ZP_07054551.1| tyrosine recombinase XerC [Listeria grayi DSM 20601]
 gi|299816194|gb|EFI83432.1| tyrosine recombinase XerC [Listeria grayi DSM 20601]
          Length = 209

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 12/192 (6%)

Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           +  +   K       AL  ++ + L+++    +  + +         + LL   G+R +E
Sbjct: 1   MEGLEPPKIEQRQVNALTYEEVIKLLNSYTTQSFKQLRG-----KTAIALLADTGVRSNE 55

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC---PFDLNLNIQLPL 229
            L++   +I  D   +  + KG+K R V L     + + +Y         D  L  +  L
Sbjct: 56  LLNIKLDHIQQDSIFIE-KAKGNKQRTVYLSALSTQILSKYLRRRQDYFTDHALIDEEYL 114

Query: 230 FRGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           F        L      + I+   +  GL      H  RH +A   LSNG DL  +Q +LG
Sbjct: 115 FVSSTVGRQLTYAGLYQIIKFAEKKAGL-KDVRPHKFRHFYAVQSLSNGLDLFFVQRVLG 173

Query: 289 HFRLSTT-QIYT 299
           H  +STT ++Y 
Sbjct: 174 HKSVSTTAKVYL 185


>gi|229188211|ref|ZP_04315287.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BGSC 6E1]
 gi|228595231|gb|EEK52975.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BGSC 6E1]
          Length = 382

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 111/320 (34%), Gaps = 40/320 (12%)

Query: 23  QNLEIERG-LSKLTLQSYECDT---RQFLIFLAFYTEEKITIQTI----------RQLSY 68
           + L  ER  LSKLT  +Y  +    R F +    Y   K  I  +          R++  
Sbjct: 58  KMLSGERSDLSKLTYAAYVDEWMKERTFHLQETTYEIHKTYIANVIKPRLGHFQMREIEP 117

Query: 69  TEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
             ++ F+++          ++      + + LK  K  K+  E+  + +   K   +   
Sbjct: 118 IHMQKFVNELAIDIGYSPATVHLIYRIVSASLKKAKVLKLIDENPTIGITLPKLRKT--- 174

Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
             +E    TL +        +  +   R      +    G+R  E + L  ++I  +   
Sbjct: 175 --SEINVWTLEEVNHFINEGKNVYRSTRMYICCVIALLTGMRQGEIMGLRWKDIDFENRI 232

Query: 188 LRIQ-------------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----L 229
           + I+                  IR V     +   +  + +    +   + +       +
Sbjct: 233 IYIRQTLTQSGKIKVGAKNNASIRNVHFPIKLIGELELHRETVKKERLYHGKDYEDNNLV 292

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
               +G PL P   +     L   LGLP     H LRH+ AT L+    +++ I   LGH
Sbjct: 293 ICARKGNPLIPKNGRIEFYNLTEKLGLPK-IRFHDLRHTHATMLIQQNVNVKLISERLGH 351

Query: 290 FRLSTT-QIYTNVNSKNGGD 308
             + TT   Y++V      +
Sbjct: 352 TDIQTTLNTYSHVLPNMQRE 371


>gi|89147357|gb|ABD62539.1| integrase [uncultured bacterium]
          Length = 167

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 47/100 (47%)

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
              + R+ + +Y                        ++    QR ++   R   +    +
Sbjct: 67  YPNAAREFLWQYVFPSTRRSIDPRVNSDPPKQSRHHVDESFLQRAVKIAVREARINKPGS 126

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            HT RHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 127 CHTFRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 166


>gi|253571742|ref|ZP_04849148.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251838950|gb|EES67035.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 407

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 54/300 (18%), Positives = 107/300 (35%), Gaps = 33/300 (11%)

Query: 14  LLKERQNWLQNL--EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLSYT 69
           LL   + +++N    +    ++ +L+SY         F+     EK  +  I    L+ +
Sbjct: 109 LLSYFRTFIENFAKRVGVNRTEGSLRSYRNAYNHVERFMR----EKYNLSDIPFSALTLS 164

Query: 70  EIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            I+ + S  RT  ++   ++      +K  +       I T         ++      R 
Sbjct: 165 FIQDYDSHLRTDCRLSPGTIINLTVQLKIIVGEAVADGIITTYPFTGYEPVRPKQKR-RY 223

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQST 187
           L  ++   L+   L   +            +       G+  S+   L+ +++   D  T
Sbjct: 224 LTSEELQRLMTMPLHRPNLYLT------RDLFLFSCYTGIPYSDMRLLSKEHLSLADDGT 277

Query: 188 LRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
             I+    K      +PLL      + +Y D  P             G      +     
Sbjct: 278 WWIRSSRRKTGVEFEIPLLDLPLHIMEKYRDTAPD------------GKLLPMYSNSTMN 325

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
             ++++ +   +      H  RH++AT + L +G  L ++  +LGH R+ TTQIY  V  
Sbjct: 326 LNLKRIAKLCDIDCPLVFHAGRHTYATEITLGHGVPLETVSKMLGHARIETTQIYAKVTD 385


>gi|307150462|ref|YP_003885846.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306980690|gb|ADN12571.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 373

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/290 (15%), Positives = 109/290 (37%), Gaps = 36/290 (12%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            + ++ +    + L   +L  Y             Y +     Q    +   +   F+  
Sbjct: 89  FEKFMDSKA--KALLPTSLDKYRATL--------GYLKSLFPNQLASTIDVKDAEKFLEW 138

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRALNEKQAL 135
              + +     +  L  I++  ++  K++    +  ++M +  +      P+  + ++  
Sbjct: 139 INNRGVSPIVCRERLILIRAAWQWGIKQQYLDTNPWIDMVSRVRVPPKQRPKPFSSEEIK 198

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----- 190
            ++D         T    +  +  +  L+  G R +EA+ L  +++ DD S++ I     
Sbjct: 199 AIIDAF------RTDQYYSYYADYVEFLFRTGCRTAEAIGLRWKHLNDDCSSVWIGESLT 252

Query: 191 -----QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ- 244
                  K ++ R + L P +++ +L          N + +  +F   +G  ++   F+ 
Sbjct: 253 RGVRKSTKTNRERTITLTPKLQQILL-----ARRPANPDPEGLVFTSSKGGAIDDHNFRN 307

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
           R    + + LGL      +  RH+F +H L  G +   +  + GH  + T
Sbjct: 308 RAWVSILQQLGLNYR-KPYNTRHTFISHALDKGMNPVEVAQLTGH-DVQT 355


>gi|317470459|ref|ZP_07929847.1| phage integrase [Anaerostipes sp. 3_2_56FAA]
 gi|316901974|gb|EFV23900.1| phage integrase [Anaerostipes sp. 3_2_56FAA]
          Length = 432

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 59/354 (16%), Positives = 118/354 (33%), Gaps = 84/354 (23%)

Query: 22  LQNLEIER-----GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
           L ++ +E       LS  T+ +Y     +   +        I  + ++ ++   ++AF+ 
Sbjct: 68  LLDMWVEEELKPGNLSNGTVMAYMGTVNRIKQY-------PIGDRKLKTVTAEHLQAFMD 120

Query: 77  KRRTQKIGDR-SLKRSLS--GIKSF-------LKYLKK-RKITTESNILNMRNLKKSNSL 125
                      +  ++LS   ++ F        ++    +K+ + + +  +  + +    
Sbjct: 121 FLTFGGQNPDGTTAKALSKGYLRLFSAVLQGAFRFAVFPKKLISFNPMQYV--VWRGKKE 178

Query: 126 PRALNEKQ------ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
              L   +        T+     +      K  D      + + Y  GLRI EA +LT Q
Sbjct: 179 EYELFADEGGEVDSTPTIDHQQFVMLEDFLKKKDNPALLPMQIAYYTGLRIGEACALTWQ 238

Query: 180 NIMDDQSTLRIQG----------------KGDKIRIVPLLPSVRKAILE----------- 212
           +I  D   L ++                 K  K+R V    ++   + +           
Sbjct: 239 DINLDGQYLTVRRSMRYNGQRHKTEIGATKRKKVRTVDFCDTLADILRKAKTEQHKNRFK 298

Query: 213 -----------------------YYDLCPFDLNLNIQLPLFRGIRGKPL--NPGVFQRYI 247
                                  Y      ++    +   F  +R      +P       
Sbjct: 299 YGELYHLNYYKEVKEKDRTYYEVYSLPRTDEVPDGYKEISFVCLRPDGAYESPSTVGVMT 358

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTN 300
           R  ++ L        H LRH+F ++LLSNG   + +Q +LGH  +STT  IY +
Sbjct: 359 RSAKKKLEGFEDFHFHMLRHTFTSNLLSNGAAPKDVQELLGHSDVSTTMNIYAH 412


>gi|298571686|gb|ADI87838.1| hypothetical protein AKSOIL_0330 [uncultured bacterium Ak20-3]
          Length = 298

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 60/288 (20%), Positives = 114/288 (39%), Gaps = 21/288 (7%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           + S EL+     +L+ +    G    T+QSY  D RQF  FL    E K ++ ++   + 
Sbjct: 4   VASSELVLSFGQFLKKI----GKKDATVQSYCRDLRQFFNFL---NENKASLSSVNHQTL 56

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
              R  +  R      + S +R++  I+ F + L +        + ++    +    PR 
Sbjct: 57  LHYRTAMQARNDGGKSN-SFRRAVIAIRQFYRMLPQFSGLPLDALDSIPIPNREEIAPRK 115

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L  +    L+      +S+     +AR+ AI+ L    G+++SE + L  ++ +  QST 
Sbjct: 116 LKLEDVERLLQ----GSSNSVSLKEARDRAIVSLFCFEGIKVSELIQLEWKHFLSPQSTA 171

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPL-----NP 240
            +   G++ R++ L       +  Y      +   L  N ++ L    R  P+     + 
Sbjct: 172 SLLIPGERKRVISLNSRTHMNLNAYQKAVQDNQASLPKNYKMFLGFKGRDFPIISSKVSR 231

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
              +  + +L    G+        LRH    H L +G +   I    G
Sbjct: 232 HGLKFMLYELGESCGVS-GLNTEILRHYAIQHHLDSGANPEDIMKHFG 278


>gi|254169467|ref|ZP_04876286.1| hypothetical protein ABOONEI_2736 [Aciduliprofundum boonei T469]
 gi|197621584|gb|EDY34180.1| hypothetical protein ABOONEI_2736 [Aciduliprofundum boonei T469]
          Length = 222

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 10/166 (6%)

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----QGKGDKIRIVPLLPSVR 207
           ++ARN A+L LL+  G+RI EA++L   +I     +L I     GKG+K RIVPL P V 
Sbjct: 39  VNARNRALLNLLFATGIRIGEAIALNWNDIDLTNPSLPILHIRHGKGEKKRIVPLPPKVL 98

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           K +++Y +    + + N             +     ++  ++     G+P    AH  RH
Sbjct: 99  KMLIDYKEKYRINSDPNAIF----TTPHGRITHPFARKICKEAGELAGVPQ-FHAHAARH 153

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYT-NVNSKNGGDWMME 312
             A   L +G +L +I+  LGH  L TTQ Y   +  +   D + E
Sbjct: 154 WRAIAWLKDGVNLETIRRFLGHSSLKTTQRYIRRLQMEWSFDEIRE 199


>gi|148377832|ref|YP_001256708.1| Phage family integrase [Mycoplasma agalactiae PG2]
 gi|148291878|emb|CAL59269.1| Phage family integrase [Mycoplasma agalactiae PG2]
          Length = 307

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 105/258 (40%), Gaps = 22/258 (8%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
            + I  + ++SY +I    ++   ++    +       +K  L       + T+     +
Sbjct: 45  DLKICDLDRVSYQQIINEYAECHERQ----TTMDFHHHLKGCLLDAFDEGLLTKDPTRKV 100

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS-AILYLLYGCGLRISEALS 175
             +K   + P+     +   L +  L     E    D  N   +++L+   GLR SEA++
Sbjct: 101 V-IKGKAARPK-----KIKFLSNFELQLLLKELNLQDKLNFDWLIFLIAKTGLRFSEAVA 154

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEYYDLCPFD---LNLNIQL 227
           LTP +    +  L I    +   +   LP     SVRK  L++  +  F      L    
Sbjct: 155 LTPDDFDFTKQLLNISKTWNYKELGGFLPTKNKSSVRKIQLDWQTISRFASLVQGLEKNK 214

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
           P+F     + +        + +  +   +P   + H LRH+ A+ LL  G  + S+   L
Sbjct: 215 PIFV--FKEKVFNSTINDILARRCKKAKIPAVISIHGLRHTHASILLYAGVSIASVAKRL 272

Query: 288 GHFRLSTTQ-IYTNVNSK 304
           GH  ++TT+ IY ++ ++
Sbjct: 273 GHSSMNTTERIYLHIINE 290


>gi|258425113|ref|ZP_05687983.1| phage integrase [Staphylococcus aureus A9635]
 gi|257844696|gb|EEV68740.1| phage integrase [Staphylococcus aureus A9635]
          Length = 344

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 112/278 (40%), Gaps = 18/278 (6%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           + T + Y    +          + KI    + +++    + FI+    +   + +++++ 
Sbjct: 82  ENTYRHYRNALQH-------IQKHKIGKMELSKINRQVYQKFINDYSKEHAKE-TIRKTN 133

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             I+S L       +  ++    + N K         +E++    V    +   H  K  
Sbjct: 134 GAIRSALDDALYDGLIFKNPAYKV-NYKAGKP---TKSEQEKFISVTEYEILKDHVRKKR 189

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
              + A+  ++   G R+S A ++  ++I   ++T+ I  +        +  S+ K+ ++
Sbjct: 190 TRSSLALF-IMICTGCRVSGARNIKIEHINQVKNTIFIDERKTNTSPRYI--SIAKSDMK 246

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +         ++    +F+      +N       ++   R   +P+  T+H LRH+  ++
Sbjct: 247 HIMDVISTFAISYDGYIFKEGGSI-INLHAINNALKSACRVNNIPI-ITSHALRHTHCSY 304

Query: 273 LLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDW 309
           LL+ G  +  I   LGH  ++ TT +Y+++  +   + 
Sbjct: 305 LLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEE 342


>gi|151222137|ref|YP_001332959.1| phage integrase [Staphylococcus aureus subsp. aureus str. Newman]
 gi|295428587|ref|ZP_06821214.1| phage integrase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|150374937|dbj|BAF68197.1| phage integrase [Staphylococcus aureus subsp. aureus str. Newman]
 gi|295127569|gb|EFG57208.1| phage integrase [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 353

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 112/278 (40%), Gaps = 18/278 (6%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           + T + Y    +          + KI    + +++    + FI+    +   + +++++ 
Sbjct: 82  ENTYRHYRNALQH-------IQKHKIGKMELSKINRQVYQKFINDYSKEHAKE-TIRKTN 133

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             I+S L       +  ++    + N K         +E++    V    +   H  K  
Sbjct: 134 GAIRSALDDALYDGLIFKNPAYKV-NYKAGKP---TKSEQEKFISVTEYEILKDHVRKKR 189

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
              + A+  ++   G R+S A ++  ++I   ++T+ I  +        +  S+ K+ ++
Sbjct: 190 TRSSLALF-IMICTGCRVSGARNIKIEHINQVKNTIFIDERKTNTSPRYI--SIAKSDMK 246

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +         ++    +F+      +N       ++   R   +P+  T+H LRH+  ++
Sbjct: 247 HIMDVISTFAISYDGYIFKEGGSI-INLHAINNALKSACRVNNIPI-ITSHALRHTHCSY 304

Query: 273 LLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDW 309
           LL+ G  +  I   LGH  ++ TT +Y+++  +   + 
Sbjct: 305 LLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEE 342


>gi|256751913|ref|ZP_05492784.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749218|gb|EEU62251.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 403

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 62/342 (18%), Positives = 128/342 (37%), Gaps = 62/342 (18%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L+   +E   S L L++Y      +   +  Y +  I    + +L+   I+   + 
Sbjct: 71  VKDYLKK-WLETKKSSLALKTY----NDYEQKIRLYIDPAIGNYKLLKLTPLIIQNMYNN 125

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q +  R+++ + + +   LK   K ++   +        K++    + L  +QA   
Sbjct: 126 MLEQGLSARTIRYTHTVLNEALKQAIKWQMLRYNPCDGTTLPKQAKKEMKVLTPEQAKKF 185

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----- 192
           ++  + +              +  LL   G+R SEAL L  ++I    + + +Q      
Sbjct: 186 LEACVYNRWG----------ILFELLLISGMRPSEALGLKWEDIDWKNNRIAVQRTLTRV 235

Query: 193 KGDKI----------RIVPLLPSVRKAILEYYD-----------LCPFDLNLNIQLP--- 228
           K +            R +PL   V   + E+                +D + N   P   
Sbjct: 236 KNNWQLKEPKTPQSRRTIPLPREVMNDLKEHRKQQSEEKLKAKEYINYDKDKNKFKPEKW 295

Query: 229 ---------------LFRGIRGKPLN-PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                          +F    G+PL+   +  +Y + L +  GLP +   + LRH+ AT 
Sbjct: 296 EEKLKDPKVYVDYGLVFATETGRPLDLANINYQYFKPLLKNAGLP-NIRLYDLRHTCATL 354

Query: 273 LLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDWMMEI 313
           LL  G + + +   LGH  ++ T   Y++V      +   ++
Sbjct: 355 LLLAGENPKVVSERLGHANITLTLDTYSHVLPTMQEEATQKL 396


>gi|89147675|gb|ABD62696.1| integrase [uncultured bacterium]
 gi|89147677|gb|ABD62697.1| integrase [uncultured bacterium]
          Length = 163

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 48/93 (51%)

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           A  E+              P     +   ++  + Q  +++     G+    T HTLRHS
Sbjct: 70  AAREWAWQYVLPSARLSVDPRSGRRQRHHVDESMLQAAVKRAVAEAGIAKPATCHTLRHS 129

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           FATHLL NG D+R++Q +LGH  ++TT IYT+V
Sbjct: 130 FATHLLENGYDIRTVQELLGHKEVATTMIYTHV 162


>gi|296446473|ref|ZP_06888416.1| integrase family protein [Methylosinus trichosporium OB3b]
 gi|296255969|gb|EFH03053.1| integrase family protein [Methylosinus trichosporium OB3b]
          Length = 446

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 78/233 (33%), Gaps = 20/233 (8%)

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            R+LS + +  ++  +      +    +R L  +    R L+  +   L   +       
Sbjct: 197 ARTLSTLHAIFEHAVRVGKIPSNPAKGVRRLASAPRE-RRLSRAEIERLGKTLRAAAEDG 255

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
                    A +  L   G R  E L +    + +++  +R        +   +  +   
Sbjct: 256 EHPTAL---AAIRFLLMTGFRRMEGLGVERGWLDEEEGAIRFPDTKSGAQTRVIGQAAID 312

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            +L              + P F        +     R + ++     L    T HTLRH+
Sbjct: 313 LLL---------ARPEAKSPFFFPADWGEGHFIGVVRVLDRICERARLA-DITPHTLRHT 362

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN------SKNGGDWMMEIYD 315
           FA+     G    +I ++LGH     TQ Y +++      +    D M +I D
Sbjct: 363 FASLAGDLGFSELTIAALLGHASRGVTQRYIHIDEALRMAADRVADEMADILD 415


>gi|225174939|ref|ZP_03728936.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169579|gb|EEG78376.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
          Length = 191

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 75/193 (38%), Gaps = 13/193 (6%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           +   + +  +L   +             R+  I  + Y C LR SE   LT       +S
Sbjct: 5   KYFTQDELASLFKAIKKK----KSKYWLRDYCIFRVAYRCALRASEVGLLTVAEYNAQRS 60

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            L     K  +   + L    +KA+ +Y        +  I   LF     KP++      
Sbjct: 61  ELYCNRLKNSQNNTIRLDDETKKALEKYIR------DYGIDDCLFPSQVSKPISRQTLDL 114

Query: 246 YIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            +R+  +   +        H+L+HS A HL  +G D++ +Q  LGH  +++T +Y    +
Sbjct: 115 LMRKYCKVAKISDKKKWHFHSLKHSVAVHLADSGLDVKELQHYLGHKNVNSTLVYFQFTT 174

Query: 304 KNGGDWMMEIYDQ 316
           +   +   ++  +
Sbjct: 175 RQQDNMYKKLEQR 187


>gi|94442290|dbj|BAE93644.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 52/110 (47%)

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G G       L      A   +     F        P    +R   +     Q+ +++  
Sbjct: 52  GHGRVWLPYALAEKYPNADRSFEWQYVFPATKLSVDPRSGAVRRHHIGESSMQKAVKRAL 111

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              G+  + + H+LRHSFATHL+ +G D+R++Q +LGH  +STT IYT+V
Sbjct: 112 ATAGIEKNASCHSLRHSFATHLIESGTDIRTVQELLGHKDVSTTMIYTHV 161


>gi|300214143|gb|ADJ78559.1| Phage integrase [Lactobacillus salivarius CECT 5713]
          Length = 381

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 100/278 (35%), Gaps = 37/278 (13%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           +  + I Q++  E +  I+   +  + +   K   + I    KY K+ KI T+    ++ 
Sbjct: 103 LGNKKINQITTIECQDLINYWYSIPLKN--YKAIFNLITRIFKYAKQLKIVTDDPTSSVI 160

Query: 118 NLKKSN------SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
             K S                +  T ++    H  H+          +  LL   G+R S
Sbjct: 161 IPKASRQFNNLEHSRNYYTRDELKTFLEYAEKHEKHKI-------YVLFRLLAFSGMRKS 213

Query: 172 EALSLTPQNIMDDQSTLRIQGK--------------GDKIRIVPLLPSVRKAILEYYDLC 217
           EAL+LT  +I  +++ + I                     R V +       + E+    
Sbjct: 214 EALALTWNDIDFEKAQITINKTIILVSKVKVTTPKTKSSNRTVFIDKKTVSILREWRLSQ 273

Query: 218 PFDLNLNIQLPL------FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
             +L       L      F       + P    + + ++     L    T H LRH++AT
Sbjct: 274 KKELLQKGFNALSPNQLVFPDKNNHYIIPTTISKMMNRVSEGSNLH-HITVHGLRHTYAT 332

Query: 272 HLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
                G  ++ +Q+ LGH ++  T  +YT++  +   D
Sbjct: 333 LAAQGGMSVKQLQAQLGHSKVEITLDVYTSITDEQRKD 370


>gi|254497199|ref|ZP_05110010.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
 gi|254353582|gb|EET12306.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
          Length = 214

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 83/198 (41%), Gaps = 20/198 (10%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L+E +   ++         +     ARN+A++Y  +G GLR  E  SLT  ++ D   
Sbjct: 28  KVLSEAEFKLVL------LVAKVGKFAARNTALVYCSFGLGLRAKEIASLTIADVADAHY 81

Query: 187 TL-------RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
            L       R   KG+K R   L     + +L+          ++    LF+  R     
Sbjct: 82  QLLQELSLKRSMTKGEKQRQAYLTHKKVREVLQ--AHLNDIKGMSHDKALFQTQRQSRFT 139

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
               Q++ + L    G+    ++H+ R +F T L+  G D++++  + GH  + TT IY 
Sbjct: 140 ANTLQKWFKALYDKAGIH-GASSHSGRRTFITRLIEQGADIKAVSRLAGHANIVTTAIYV 198

Query: 300 NVNSKNGGDWMMEIYDQT 317
               ++  + +  I +  
Sbjct: 199 ----EDNPERLKRIANLA 212


>gi|32451217|emb|CAD55723.1| putative integrase [Bacteroides coprosuis]
          Length = 192

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 11/177 (6%)

Query: 160 LYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217
           + L+Y    RI+E LS+  ++I    D+  + + GKG KIR + LLP     +  Y    
Sbjct: 1   MILMYATAARINEILSIKIEDIHIEVDKPYITVVGKGGKIRTLYLLPKAISHLKAYI-RE 59

Query: 218 PFDLNLNIQLPLFRGIRGK---PLNPGVFQRYIRQLRRYLGL-----PLSTTAHTLRHSF 269
              +    +  LF          L+     + +++      L     P +  AH  RH+ 
Sbjct: 60  FHGVKSPNEAYLFYSRNHGIYGKLSDVAVNKQLKKHADAARLSCKEVPDNMHAHIFRHAK 119

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326
           ATH + +G  +  I  +LGH  L+TT  Y ++ ++     +  ++D+    I +  K
Sbjct: 120 ATHWMDDGMQIVQISYLLGHSNLNTTMKYLDITTEQEIRALETLHDEGSNKIKRNWK 176


>gi|253565735|ref|ZP_04843190.1| transposase [Bacteroides sp. 3_2_5]
 gi|251946014|gb|EES86421.1| transposase [Bacteroides sp. 3_2_5]
          Length = 217

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 93/227 (40%), Gaps = 22/227 (9%)

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
           K   +   K   + + +  + +  K+  + P+AL+ +    L D  +     E +     
Sbjct: 1   KKICRIAYKEGHSEKYHFCHFKLPKQKETTPKALSRENFEKLRDLEI----PEKRRSHVI 56

Query: 156 NSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRI---QGKGDKIRIVPLLPSVRKAIL 211
              +       G   ++A+S+T +N   DD+ +L +   + K D +  V LLP     I 
Sbjct: 57  TRDLFLFACYTGTAYADAVSITRKNLFRDDEGSLWLKYQRKKTDYLGRVKLLPEAVALIE 116

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           +Y D        + +  LF      P +    +  ++ LR   GL      H  RHSFA+
Sbjct: 117 KYRD--------DTRETLFP-----PQDYHTLRANMKSLRLMAGLSQDLVYHMGRHSFAS 163

Query: 272 HL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + L  G  + +I  +LGH  + TTQIY  V  K   + M    + T
Sbjct: 164 LVTLEEGVPIETICKMLGHSNIKTTQIYARVTPKKLFEDMDRFVEAT 210


>gi|239502669|ref|ZP_04661979.1| integrase [Acinetobacter baumannii AB900]
          Length = 194

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 89/186 (47%), Gaps = 16/186 (8%)

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-----TLRIQG- 192
           D++ +  + +T     RN  +LY  +  GLR  E   L   ++ D +       +R+ G 
Sbjct: 15  DDLEITLATQTGVNALRNKCVLYFSHFLGLRAKELSMLKVGDVYDVKKGKLKDIIRLLGN 74

Query: 193 --KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
             KG++ R V L+  + ++++E Y     +   +   PLF   +G P +P      I   
Sbjct: 75  ITKGNRYREVFLVNPIARSLVEEYITK--ERPKDPDAPLFLSQKGGPFSPNSMVTMINNC 132

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            +  G+    T+H+ R SFAT L+  GGD+ SIQ ++GH  + TTQ Y      +  + +
Sbjct: 133 YKKAGIQ--ATSHSGRRSFATRLIRKGGDIYSIQQLMGHSSILTTQKY----FASDPELL 186

Query: 311 MEIYDQ 316
            ++ ++
Sbjct: 187 RQVAEK 192


>gi|229102535|ref|ZP_04233240.1| Tyrosine recombinase [Bacillus cereus Rock3-28]
 gi|228680857|gb|EEL35029.1| Tyrosine recombinase [Bacillus cereus Rock3-28]
          Length = 190

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 6/161 (3%)

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            R+ AIL    G G+R+SE   L  ++I   +  + +  KG+K   V + P    A+ +Y
Sbjct: 25  HRDVAILSFFLGSGIRVSELADLRMEDINLKERLIDVIRKGNKEDSVWITPIALNALEKY 84

Query: 214 YDLCPFDLNLNIQLP-LFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
            ++         +L  +F         PL+    Q  + +  +  G     + H LRH+ 
Sbjct: 85  MEIRDNKYVPGKELKNVFLSKYKHTAQPLSVRAIQDIVEKYTKAYG--KKMSPHKLRHTL 142

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           A  L     D   +   LGH    T  +YT +      D +
Sbjct: 143 ANKLYMEEKDSLQVMQQLGHTSQDTALLYTQLGETTIKDNL 183


>gi|89147458|gb|ABD62589.1| integrase [uncultured bacterium]
          Length = 164

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 44/89 (49%)

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +     F        P     +   +  G   ++++      G+    TAH LRHS+ATH
Sbjct: 75  WEWFWVFPAARRGIDPRDGEEKRHHIMEGAVSKWLKNAVGKAGIEKRVTAHVLRHSYATH 134

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LL  G DLR+IQ  LGH  + TT+IYT+V
Sbjct: 135 LLQKGVDLRTIQEALGHSSVKTTEIYTHV 163


>gi|260593258|ref|ZP_05858716.1| integrase [Prevotella veroralis F0319]
 gi|260534815|gb|EEX17432.1| integrase [Prevotella veroralis F0319]
          Length = 409

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 113/287 (39%), Gaps = 33/287 (11%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD-----RS 87
           + ++ +Y    ++   F+       ++     QL+     +FI + +T  +G+      +
Sbjct: 131 RNSMSAYHSTRKRLQEFIQKKYH--VSDLAFSQLT----ESFIYELQTFCLGELGHQQST 184

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             R  + +K+  +   +  +        +   +     P+AL+++     +D +      
Sbjct: 185 FFRVAADLKTVCRLAYREGLADTLLFDKVHIERGDKKAPKALDKEA----LDKLKALRFD 240

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRI---QGKGDKIRIVPLL 203
           E +        +       G    + + L+ ++++ DD  +L +   + K   +  + LL
Sbjct: 241 ELEEEMETARDVFLFACYTGAAYCDLMELSKKHLVRDDAGSLWLKFSRQKTGVLCRIKLL 300

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           P   + I + +      L  +I+ P              +Q  ++ LR   G+    T+H
Sbjct: 301 PEAVRLIEKMHSDERETLLPHIKYP-------------TYQSCLKALRLRAGISFPFTSH 347

Query: 264 TLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           T RH+FAT + L  G  + ++  +LGH  +S T+ Y  V  +   + 
Sbjct: 348 TARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQKLFEE 394


>gi|329115533|ref|ZP_08244264.1| Integrase/recombinase XerD-like protein [Acetobacter pomorum DM001]
 gi|326695142|gb|EGE46852.1| Integrase/recombinase XerD-like protein [Acetobacter pomorum DM001]
          Length = 315

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 98/282 (34%), Gaps = 20/282 (7%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           LS  T  +Y  D + F  +      E+  I  + Q +  +I +++S           + R
Sbjct: 28  LSPATRAAYATDWQSFTAWC-----EQRDILAL-QATPAQIASWLSSLAEAGRKASGIAR 81

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           + + +     +  +     ++  +         +L  A   KQA T      +     + 
Sbjct: 82  ARAALS--HAFQGQEYNPVKAPGVERVMAGIRRTLGTAPIRKQAATAEIMRDMLAHCPSS 139

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS----TLRIQGKGDKIRIVPLLPSV 206
               R+ A+L L +   LR SE ++LT  +++  +     T+R            +    
Sbjct: 140 LSGQRDQALLALGFAGALRRSELVALTTDDLLFQERGMLVTIRRSKTDQDGSGQVIGIPN 199

Query: 207 RKAILEYYDLCPFDLNLNI-QLPLFRGIRGK------PLNPGVFQRYIRQLRRYLGL-PL 258
            + +     +  +     I Q P+FR I         PL+       ++      G  P 
Sbjct: 200 GRRLRPVDAVRSWLAVSGITQGPVFRSITRHGHLSTQPLSDRSVATIVKTYAHAAGYDPR 259

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             + H+LR  F T     G D  ++  +  H  LS  Q Y  
Sbjct: 260 GFSGHSLRAGFVTSGAQTGQDALALARVTRHKNLSVLQTYVR 301


>gi|89147442|gb|ABD62581.1| integrase [uncultured bacterium]
          Length = 163

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/94 (37%), Positives = 49/94 (52%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           KA  E+     F        P    +R   ++    Q+ I+   R   +  + + HTLRH
Sbjct: 69  KAGKEWPWQWVFPSRSLSVDPRTGKVRRHHIHQNTLQKQIKTAARKSTIVKNVSVHTLRH 128

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFATHLL  G D+R+IQ +LGH  + TT IYT+V
Sbjct: 129 SFATHLLEKGYDIRTIQELLGHANVQTTMIYTHV 162


>gi|34222905|sp|Q8KRZ2|XERC_PSESX RecName: Full=Putative tyrosine recombinase xerC
 gi|21745390|gb|AAM77365.1|AF521605_1 putative integrase XerC [Pseudomonas syringae]
          Length = 473

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/335 (16%), Positives = 118/335 (35%), Gaps = 48/335 (14%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M+   LPE+    +L               L   T++ Y   T+ ++ F       + T 
Sbjct: 1   MKPMTLPELTQEYILTH------------DLRPDTVKIYRAATKAYVNFFGECLACETTH 48

Query: 61  QTIRQLSYTEIRAFISKRRTQ--KIGDRSLKRSLSGIKSFLKYLKKRKITT--ESNILNM 116
                      R  +  RR++  +I  RS     S +++  +Y  +  +     + + + 
Sbjct: 49  -----------RDMLEWRRSELARISKRSWNTYSSHLRTVYRYAMEHGLVELKVNPLKDT 97

Query: 117 R-----NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS-AILYLLYGCGLRI 170
           R       KK+      +  +  L  +    L T   ++   A    A+    Y  G+R+
Sbjct: 98  RVMPTKRPKKTIGNDVIVRARNWLRFLVQEELSTGKRSEITPAWFWLAVFETFYYTGIRL 157

Query: 171 SEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           +  L L  +N+   Q  +R++G   K  +  ++P+   +   ++   D            
Sbjct: 158 NALLCLRYENVDLGQRLIRVRGETEKTHREFMIPIPDGLMPHLVLVMDTAKKVGFSGTDQ 217

Query: 228 PLFRGIRGKP-----LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLR 281
                          +N    +   ++L    G     T H  RH+ A+ L+     ++ 
Sbjct: 218 VFNINRFSGHYKREYMNSDQVEAMYKKLTNMTG--TRMTPHRFRHTIASELMRQPERNIH 275

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
             +++L H  ++TT  Y     +   D M E+ ++
Sbjct: 276 ITKNLLNHSNIATTMEYI----EPDYDLMREVMNE 306


>gi|260855381|ref|YP_003229272.1| putative integrase [Escherichia coli O26:H11 str. 11368]
 gi|257754030|dbj|BAI25532.1| putative integrase [Escherichia coli O26:H11 str. 11368]
          Length = 426

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/320 (11%), Positives = 99/320 (30%), Gaps = 53/320 (16%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT-EEKITIQTIRQLSYTEIRAFISK 77
           + +L   E E  ++K +L +Y    +  L  +        I  + +  +    +  +   
Sbjct: 86  EKFLALKETE--VAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLAVRKELLTGYQIP 143

Query: 78  RRTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +             ++   ++ + +  ++        ++    +  LK+S ++P  L+ +
Sbjct: 144 KSNYIVTQPGRSAVTVNNYMTNLYAVFQFGVDNGYLADNPFKGISPLKESRTIPDPLSRE 203

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + + L+D      +            +  +    G+R  E  +L  ++I     T+ I+ 
Sbjct: 204 EFIRLIDACRNQQAKN----------LWCVSVYTGIRPGELCALGWEDIDLKNGTMIIRR 253

Query: 193 KGDKIRIVPLLPSV--------------------------RKAILEYYDLCPFDLNLNIQ 226
              K R                                  ++ I++ +            
Sbjct: 254 NLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMALTRLSKEHIIDVHLREFGRTEKQKC 313

Query: 227 LPLF-------RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
             +F           G        ++      +  G+    +  + RH++A   L+ G +
Sbjct: 314 TFVFQPEVSAKVKNYGDHFTVDSIRQMWDAAVKRAGIRHRKSYQS-RHTYACWSLTAGAN 372

Query: 280 LRSIQSILGHFRLSTT-QIY 298
              I + +GH       Q+Y
Sbjct: 373 PAFIANQMGHADAQMVFQVY 392


>gi|223369848|gb|ACM88793.1| integrase [uncultured bacterium]
          Length = 163

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 37/162 (22%)

Query: 177 TPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--------- 226
             +++  D+  + ++ GKG K R+V L   +R A+ E           + Q         
Sbjct: 1   RVKDLDFDRRVVIVREGKGGKDRVVMLPDRLRVALKEQLLYSRALWEADRQAGLPGVYLP 60

Query: 227 ----------------LPLFRG-----------IRGKPLNPGVFQRYIRQLRRYLGLPLS 259
                             +F             +R   L P   QR +++     G+   
Sbjct: 61  HALELKYPRAGQTWAWHWVFPSPTVSTDPQSGIVRRHYLYPERLQRALKRAVGQAGIAKH 120

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            + HTLRHSFATHLL    D+R++Q +LGH  +STT IYT+V
Sbjct: 121 VSVHTLRHSFATHLLQPNTDIRTVQELLGHSDVSTTMIYTHV 162


>gi|301161269|emb|CBW20807.1| putative bacteriophage integrase [Bacteroides fragilis 638R]
          Length = 411

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/310 (16%), Positives = 114/310 (36%), Gaps = 30/310 (9%)

Query: 14  LLKERQNWLQNLEIERGLS-KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
             +  +++ +  +++ GL    T   Y    +    F+      +++   +++L+   I 
Sbjct: 113 FARHNEDFFK--QVDAGLRCPSTYHKYCTVYKHLEEFIKNRY--RVSDIALKELTPAFIT 168

Query: 73  AFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
            F    RT+K   + ++   +  ++  +   +          ++  ++   ++    L +
Sbjct: 169 DFDIFLRTEKQCCNNTVWIYMMPLRRMITIAQNHGWIVRDPFVDY-SISAESTDRDYLTK 227

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQST 187
            +   L+D      S E          +       GL  ++  +LT  N           
Sbjct: 228 DEIRRLLDLKFRRKSMELV------RDLYVFCCFTGLSFTDMKNLTKDNLQTSFDGKLWI 281

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           +  + K      + LL   ++ I +Y  +   D  L +   +               + I
Sbjct: 282 MTKRQKTGVESNIMLLDIPKQIIEKYDGMAKEDYLLPVPQYI------------TACKNI 329

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +++    G+    T HT RH+ AT   L+NG  + ++  +LGH  + TTQIY  +  +  
Sbjct: 330 KKIIGLCGIEKEITWHTSRHTMATEICLTNGVPIETLSKMLGHTNIRTTQIYAKITHEKE 389

Query: 307 GDWMMEIYDQ 316
              M  + D+
Sbjct: 390 SRDMAALSDK 399


>gi|301067092|ref|YP_003789115.1| phage integrase:phage integrase, N-terminal SAM-like protein
           [Lactobacillus casei str. Zhang]
 gi|300439499|gb|ADK19265.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Lactobacillus casei str. Zhang]
          Length = 360

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 66/312 (21%), Positives = 118/312 (37%), Gaps = 38/312 (12%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           +  +  L +    W+ +L  +  +S +T   YE            + ++      +R L+
Sbjct: 56  QAGAITLSEYFDRWI-HLYKQNSVSSVTFIKYENTL--------SHIQQLFGGVLLRDLT 106

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP- 126
            T  +  +     Q    R++      I++ L      +I         + +    SLP 
Sbjct: 107 RTLYQERL-NVFAQNHAPRTVAAFHKQIRAALLDAVDERIIHLDPTR--KAIISGRSLPL 163

Query: 127 --RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
             RAL+ ++   LV  +    + +          I+Y+    GLR +E L LT ++I   
Sbjct: 164 TKRALDYREWYRLVRGLDTLNTEQ---------MIIYIAAVTGLRYAEVLGLTERDIDFG 214

Query: 185 QSTLRIQGKGDKIRIVPLLP-----SVRKAILEYYDLCPFDLNLNIQLP------LFRGI 233
            + + +    D              SVR  +L+   L      L +  P      +F   
Sbjct: 215 HAEISVNKTWDYKYHTGFKKTKNTASVRTIVLDPVSLSKLRHFLKVNSPQTSNTAIFAPD 274

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
              P++     + + Q    LGLP   T H LRH+ A+ LL  G  + S+   LGH  ++
Sbjct: 275 GHAPVSAE-INKILTQKLESLGLPR-VTFHGLRHTHASILLYQGVSVLSVSKRLGHSNIT 332

Query: 294 TTQ-IYTNVNSK 304
           TTQ  Y +V  +
Sbjct: 333 TTQATYLHVIKE 344


>gi|258453038|ref|ZP_05701031.1| integrase [Staphylococcus aureus A5948]
 gi|257859248|gb|EEV82103.1| integrase [Staphylococcus aureus A5948]
          Length = 405

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 62/351 (17%), Positives = 129/351 (36%), Gaps = 47/351 (13%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ++ N+  ++ +         WL++ +   G    T++  +          A   +  I  
Sbjct: 58  LKHNSTKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKS--------NANTVKNAIDS 109

Query: 61  QT-IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRN 118
           +  I ++++T ++  I     +      ++  +  I+S  KY  K   +   S +  +  
Sbjct: 110 KVLISKITHTYLQN-IINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDI 168

Query: 119 LKKSNSLPR-------ALNEKQALTLVDNVLLHTSHETKWIDARNS----AILYLLYGCG 167
            KK+ +           L + +   L+        H+      RN     A++      G
Sbjct: 169 PKKAQTRNELQAKRNNYLEDSEVKELLQCFDYLIKHKRHATRKRNYEMVKALVEFQINNG 228

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV------------------------PLL 203
           +RI E L++   NI  +  TL I G  + +                             +
Sbjct: 229 MRIGELLAIKKDNINYEDKTLDIDGTINWVTDKETGAFGVKETTKTSKSYRTIGLTTQSI 288

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
             ++  IL+      ++ +   +  +F    G P++       I++      +    T H
Sbjct: 289 NLLKTLILDNKKENQWNEDFIDRGYVFTNTAGSPIDLNKVNSIIKEATEISSINKRVTTH 348

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           TLRH+  + L   G +L++IQ  +GH    TT +IYT+V  +   D M ++
Sbjct: 349 TLRHTHISTLAQLGINLKAIQDRVGHSDYKTTLEIYTHVTDQMAKDMMNKL 399


>gi|228990729|ref|ZP_04150694.1| Transposition regulatory protein TnpB [Bacillus pseudomycoides DSM
           12442]
 gi|228769255|gb|EEM17853.1| Transposition regulatory protein TnpB [Bacillus pseudomycoides DSM
           12442]
          Length = 678

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/337 (15%), Positives = 115/337 (34%), Gaps = 32/337 (9%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +I   E+ +  + + +    +R LSK      S +        F +     + +   ++ 
Sbjct: 200 KIEQVEMRQHIKRYFK----QRLLSKNHFSWGSAQGYLTHLSRFWSLIFSLEPSWTNLKG 255

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRS---------LSGIKSFLKYLKKRKI-TTESNILN 115
           L  + +  +I         + + K +         L+ I  FL+  ++ +        + 
Sbjct: 256 LKRSHMERYIQWLHEYTRSNLTQKNAHPESHIQLVLTYIGKFLRDTQRYEYDIAPDTRIQ 315

Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
           +    +     +  +  Q   + D VL         +      ++++ Y  GLRIS+ L 
Sbjct: 316 LLLFPEDKPKLKKKSIDQIDYIPDYVLEQLFMHIDDLHKEVVPVVWVAYKTGLRISDVLG 375

Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK------AILEYYDLCPFDLNLNIQLPL 229
           LT   +        I    +K  +      + +      AIL +      +   N +  +
Sbjct: 376 LTSNCLERINGKYSIVTDIEKTYVQGHRIPIDEELANILAILIHKSKENSNQGNNPEGFI 435

Query: 230 FR----GIRGKPLNPGVFQRYIRQLRRYLGLP------LSTTAHTLRHSFATHLLSNGGD 279
           F       +G P      QR + +L +   +            H  RH++A  +L++G D
Sbjct: 436 FVRYRGSRKGNPYFQKWIQRELNKLAKQKNIVDENGKLFHFKLHQFRHTYAVKMLNSGAD 495

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           + ++Q +L H     T  Y  +           ++ +
Sbjct: 496 ILTVQELLAHASPEMTLRYAKLLDDTKRKAFEAVFSK 532


>gi|213648766|ref|ZP_03378819.1| site-specific recombinase, phage integrase family protein
           [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
          Length = 296

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/270 (21%), Positives = 110/270 (40%), Gaps = 38/270 (14%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR---SLS 93
           Q++E  T++F   L   +   I    + ++S   +  + S R    I   ++ R    LS
Sbjct: 44  QNHEHGTKEFNHLLKTISG--IGDIPVSRMSKRALMDYRSMRLRDGISAATINRDMYRLS 101

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
           G+  F K ++  + + +  I  +  L ++N     L + +   L++            +D
Sbjct: 102 GM--FTKLIQLDEFSGQHPIHGLPPLAEANPEMTFLEKAEIEKLLNV-----------LD 148

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
             +  +  L    G R +E  +L P  I + + T  ++ K  K R VP+   + K + E 
Sbjct: 149 GDDLLVALLCLSTGGRWTEVATLKPAQITNCRVTF-LKTKNGKKRTVPISEELEKKVKEE 207

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                F ++                      R ++       +P +   H LRH+FA+H 
Sbjct: 208 ASAKLFKVDYEKF--------------CGILRRVKP-----DIPPNQATHILRHTFASHF 248

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           + NGG++ ++Q ILGH  +  T  Y ++  
Sbjct: 249 MMNGGNIIALQQILGHASIQQTMAYAHLAP 278


>gi|167762059|ref|ZP_02434186.1| hypothetical protein BACSTE_00409 [Bacteroides stercoris ATCC
           43183]
 gi|167700018|gb|EDS16597.1| hypothetical protein BACSTE_00409 [Bacteroides stercoris ATCC
           43183]
          Length = 409

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 110/287 (38%), Gaps = 26/287 (9%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIR--QLSYTEIRAFISK-RRTQKIGDRSLKRSL 92
             +Y     ++   L+ Y ++K+  + I    L    I+ + S     + +   +    +
Sbjct: 129 QSTYRGLVDEY-KCLSCYLKDKLGTEDIPLMSLDMDFIKNYYSWMLSVRGLAKSTAFERV 187

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           + +K  +          +          +    P  L+E+    ++   L +   +    
Sbjct: 188 NTLKWLMYLAMDEGWIHKHPFKKFVCKPEYKKRP-FLSEEDLQRVISVKLSYRRQQAI-- 244

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQ--NIMDDQSTLRI--QGKGDKIRIVPLLPSVRK 208
                 +   +   GL  ++   L+ +  +   D +T  +  + K     +V L+P V +
Sbjct: 245 ----RDMFVFMCFSGLAHADLKELSYRNVHTDSDGNTWLVGNRVKTKAPYVVKLIPIVVE 300

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            I +Y  +  F ++ +   P+           G  +  ++++    G  +  + H  RH+
Sbjct: 301 LIEKYRGVNEFKVSPDRVFPVGE--------IGSMEDSLKRIGEKAGCSVRVSPHVGRHT 352

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG---DWMME 312
           FAT  LS G  L ++Q +LGH  + +TQ+Y  + +   G   D M E
Sbjct: 353 FATLALSKGMPLETLQKVLGHKTIISTQVYAELINPKIGEDTDRMRE 399


>gi|125625033|ref|YP_001033516.1| phage integrase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493841|emb|CAL98834.1| phage integrase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071839|gb|ADJ61239.1| phage integrase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 393

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 91/232 (39%), Gaps = 17/232 (7%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L+ IK  L Y  +     +++ + +   K      + +       L   +L   + E   
Sbjct: 152 LNFIKRILDYGMQLGAIEDNSAIKVFPPKLKTRTVKKIKYFDNEELKQFLLYLDTLEPST 211

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--------------GKGDKI 197
            + ++  +  LL   GLR+ EA++L+  +I  +   L +                  +  
Sbjct: 212 DNRKSKTLYKLLLATGLRVGEAMALSWSDIDFNNHYLSVSKTLIQQSNLIQDSAKTKESN 271

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R V L     +++ E+      D  +++   L      K  +  + ++ + +  +  G+P
Sbjct: 272 RSVFLDNDTLESLKEWRKY-QNDGAISLHDSLVFSYHQKMRSYEIERQKLVRHFKNAGVP 330

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGD 308
            +   H  RH+ A+ L++N  + + IQ  LGH   + T   Y+++      +
Sbjct: 331 -NIGFHGFRHTHASLLMNNDVNPKEIQRRLGHADYAITMNTYSHLAKSKEKE 381


>gi|116512937|ref|YP_811844.1| integrase [Lactococcus lactis subsp. cremoris SK11]
 gi|116108591|gb|ABJ73731.1| Integrase [Lactococcus lactis subsp. cremoris SK11]
          Length = 393

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 91/232 (39%), Gaps = 17/232 (7%)

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           L+ IK  L Y  +     +++ + +   K      + +       L   +L   + E   
Sbjct: 152 LNFIKRILDYGMQLGAIEDNSAIKVFPPKLKTRTVKKIKYFDNEELKQFLLYLDTLEPST 211

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--------------GKGDKI 197
            + ++  +  LL   GLR+ EA++L+  +I  +   L +                  +  
Sbjct: 212 DNRKSKTLYKLLLATGLRVGEAMALSWSDIDFNNHYLSVSKTLIQQSNLIQDSAKTKESN 271

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R V L     +++ E+      D  +++   L      K  +  + ++ + +  +  G+P
Sbjct: 272 RSVFLDNDTLESLKEWRKY-QNDGAISLHDSLVFSYHQKMRSYEIERQKLVRHFKNAGVP 330

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGD 308
            +   H  RH+ A+ L++N  + + IQ  LGH   + T   Y+++      +
Sbjct: 331 -NIGFHGFRHTHASLLMNNDVNPKEIQRRLGHADYAITMNTYSHLAKSKEKE 381


>gi|315038555|ref|YP_004032123.1| phage integrase family protein [Lactobacillus amylovorus GRL 1112]
 gi|312276688|gb|ADQ59328.1| phage integrase family protein [Lactobacillus amylovorus GRL 1112]
          Length = 377

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/298 (17%), Positives = 109/298 (36%), Gaps = 36/298 (12%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDR 86
           E+GL+  T+++Y+ +       +   T +  T+ TI+ ++   +  +++     +K+ + 
Sbjct: 84  EQGLAYKTIETYKANLN-----VINKTFKDQTVSTIKAVT---VNRYLNDASYKKKLSNG 135

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMR-------NLKKSNSLPRALNEKQALTLVD 139
           ++   +        Y ++     ++    ++         K        L + +  TL++
Sbjct: 136 TVHSFMVLFFKIFNYAEQFGYLKDNPNSKIKVNYRDESKKKLDKIENWYLTDDEFKTLMN 195

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--------DDQSTLRIQ 191
                   E K  D         LY  G+RI E  ++  ++I         D   TL  +
Sbjct: 196 YC-----DEKKRPDY--KEFFQWLYLTGMRIGEGSAIQVKDIFKIDDTYYADVNGTLICK 248

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGK-PLNPGVFQRYI 247
               K      +  +RK  L    +  +  +   +     LF  +    PLN     R++
Sbjct: 249 KGWRKQPFTKTVKGMRKVSLPDQAVELYQKHKVDKKDDDYLFTNMYSGGPLNVSSVDRWL 308

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
                   L    ++H  RH+  + L   G  L  I   +GH    TT+ IY ++  K
Sbjct: 309 GIFNDKEELTKDISSHIFRHTHVSKLAEAGFPLPVISDRVGHENEETTRKIYLHITKK 366


>gi|30908746|gb|AAP37605.1| IntI [uncultured bacterium]
          Length = 161

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/110 (32%), Positives = 50/110 (45%)

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G GD      L     +A  E+     F        P    IR   +      R ++Q  
Sbjct: 52  GYGDVELPDALARKYPRAPYEWGWKFVFPSGKISTDPRTGVIRRHHVYENYVIRGVKQAA 111

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               +    + HTLRHS ATHLL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 112 HAARIDKHVSCHTLRHSSATHLLEDGYDIRTVQELLGHSSVETTMIYTHV 161


>gi|299146227|ref|ZP_07039295.1| integrase [Bacteroides sp. 3_1_23]
 gi|298516718|gb|EFI40599.1| integrase [Bacteroides sp. 3_1_23]
          Length = 321

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/299 (19%), Positives = 100/299 (33%), Gaps = 37/299 (12%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + ++  L  E   S  T   Y+     F  F            + RQ++   +R +    
Sbjct: 12  EFYIGRLRKEGRYS--TAHVYKNALFSFSKFCGTLN------VSFRQVTRGSLRRYGQYL 63

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-----NLKKSNSLPRALNEKQ 133
               +   ++   +  ++S      +  I      L        ++++  +LP       
Sbjct: 64  YECGLKPNTISTYMRMLRSIYNRGVEAGIALYVPRLFHDVYTGVDVRQKKALPAV----- 118

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLY-GCGLRISEALSLTPQNIMDDQSTLRIQG 192
                +   L           R  AI  L++  CG+  ++   L       +Q+ LR   
Sbjct: 119 -----ELHKLLYEDPKSERLRRTQAIAALMFQFCGMSFADLAHLEKSA--LEQNVLRYNR 171

Query: 193 -KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV--------- 242
            K      V +L + R+ I +  +      +    L        K L+            
Sbjct: 172 IKTKTPMSVEVLDTAREMINQLRNREDAQPDCPDYLFDILSGDQKRLDERGYREYQSALR 231

Query: 243 -FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            F   ++ L R L L    T++TLRHS+AT     G  +  I   LGH  + TTQIY  
Sbjct: 232 QFNNRLKDLARALHLQSPVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLK 290


>gi|295084228|emb|CBK65751.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 403

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 103/282 (36%), Gaps = 12/282 (4%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             + Q+Y+   R F  ++     +K  I    Q S  E   +I ++    +  R++K+  
Sbjct: 125 PHSFQTYKSKLRIFCEWVEQTGLDKKNICFFEQNSICEFLCYIVEKHD--VSQRTVKKYT 182

Query: 93  SGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
             +  F  YL K ++I   + + ++ N+        ++ ++ A  + D      S   K 
Sbjct: 183 QILHGFFDYLLKVKRIIDTNPVHDIPNM-------GSIKDEAAKPIPDRERQLLSKHIKE 235

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
            D +   +  + Y C +R +E   L   +I  D   + +     K R    +   R+   
Sbjct: 236 HDPQLWLVCQMEYYCAIRPNECRQLQIGDIDFDNHIITVPKDISKNRQTESVNIPRQLYD 295

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
             Y++   D +                 L    F+    ++R  L +      ++ +H+ 
Sbjct: 296 YIYNILNLDTHPKDFYIFSHNGVPGKTMLGKNNFRFRFDKIRDRLNVSNQYKLYSFKHTG 355

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
              L++ G D   +Q    H  + TT+ Y   N     D + 
Sbjct: 356 GVKLVNEGIDTWELQRHFRHKSIDTTERYIRRNFAVKSDKIR 397


>gi|113460700|ref|YP_718766.1| phage integrase [Haemophilus somnus 129PT]
 gi|112822743|gb|ABI24832.1| phage integrase [Haemophilus somnus 129PT]
          Length = 308

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 84/215 (39%), Gaps = 26/215 (12%)

Query: 103 KKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
               +             R  +   +  + LN+ +  TL+  + L       W       
Sbjct: 90  VDEGLLPRDPTRKAIIKGRPPRLKKT--KYLNQFELHTLITQLNLTKEINWDW------- 140

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY 213
            + L+   G+R SEAL+LTP++      TL I    +        P     SVRK  L++
Sbjct: 141 FILLIAKTGMRFSEALALTPKDFDFAHQTLTINKTWNYKDGGGFQPTKNRSSVRKIPLDW 200

Query: 214 YDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
             +  F     N   + P+F   +   +        + +  +   +P+  + H LRH+ A
Sbjct: 201 QTIIQFAELIKNKPEEQPIFVRKK---IFNSTVNNILIRRCKKANIPI-ISLHGLRHTHA 256

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           + LL  G  + S+   LGH  ++TTQ  Y ++  +
Sbjct: 257 SLLLFAGVSIASVARRLGHSNMTTTQKTYLHIIQE 291


>gi|10957535|ref|NP_051689.1| integrase/recombinase XerD, putative [Deinococcus radiodurans R1]
 gi|6460964|gb|AAF12667.1|AE001827_5 integrase/recombinase XerD, putative [Deinococcus radiodurans R1]
          Length = 236

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 84/245 (34%), Gaps = 17/245 (6%)

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKY--LKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           ++R   K   R L + L   +    Y     R +  E   L +     S  LP    E+Q
Sbjct: 4   TRRTGAKKKARELAKLLRAERPDYAYLKEVFRHLRAE---LEVEVPGPSRRLPWVPTEEQ 60

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-G 192
                + V        +     +  ++      G+R+SE + +   ++  D   +R+  G
Sbjct: 61  VRAFYEAV-------WRTRRTADLVLIKTFLYTGVRVSELVMMRLADVDLDACQIRVNLG 113

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R+VP     ++ +  +             + LF     +  +    +R   +   
Sbjct: 114 KGSKDRVVPFPAPFKETLALHIGQR----RQQGGIYLFESSWKRRYSXRGVRRMFERYTA 169

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +  S + H LRH   T L   G D   IQ   GH    + +IY+ +           
Sbjct: 170 LAEIDRSLSPHKLRHFLLTWLKKQGLDDALIQPYSGHASRQSLEIYSRLALGEAQREYDR 229

Query: 313 IYDQT 317
           +  + 
Sbjct: 230 VIGRF 234


>gi|320329687|gb|EFW85676.1| hypothetical protein PsgRace4_12858 [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 484

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 123/337 (36%), Gaps = 52/337 (15%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M    LPE+    +L               L   T++ Y   T+ ++ F       + T 
Sbjct: 1   MNTMTLPELTQEYILTH------------DLRPDTVKIYWAATKSYVRFFGDRLASETTH 48

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           + +     +E+         ++I  RS       +++  +Y  +  +      L +  LK
Sbjct: 49  RDMLDWRRSEL---------ERISKRSWNTYSGHLRTVYRYAMEHGLVD----LKVNPLK 95

Query: 121 KSNSLP-----RALNEKQALT-------LVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
           ++  +P     + +N    +        LV       +           A+  + Y  G+
Sbjct: 96  ETRVIPAKRPKKTVNTDAIVRARNWLNILVQEERATGNRTEITPAWFWLAVFEMFYYTGI 155

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP-------LLPSVRKAILEYYDLCPFDL 221
           R++  + L   +I   Q  +R++G+ +K            L+P +++ +     +     
Sbjct: 156 RLNALICLRYADIDLGQRLIRVRGETEKTHREFMIPIPDGLMPHLKRLMDIAQRVGFDPA 215

Query: 222 NLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGD 279
           +    +  F G   +P +N    +   ++L    G+    T H  RH+ A+ ++     +
Sbjct: 216 DQIFNVNRFSGHYSRPQMNADQVEAMYKKLTAMTGV--RMTPHRFRHTIASEMMRQPERN 273

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +   +++L H  ++TT  Y     +   D M E+ ++
Sbjct: 274 IHITKNLLNHSNIATTMEYI----EPDYDVMREVMNE 306


>gi|239907685|ref|YP_002954426.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239797551|dbj|BAH76540.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 348

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/318 (17%), Positives = 121/318 (38%), Gaps = 35/318 (11%)

Query: 4   NNLPEIVSFELLKERQNWLQNLE----IERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
            + PE +S  +    + +L  L       R +   T+++      +   FL  +      
Sbjct: 53  PSTPEAISEVVAVADKIYLDQLAQMYINTRKVEGTTVKT----LNEIRSFLKKHLIPVFA 108

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
            + I ++ Y EI   I  +        +  R LS +K+  ++  K+ +  ++    +R+ 
Sbjct: 109 QRPIDEIRYDEILT-IVGKAYADHSPVTRGRYLSYLKTVFQFGVKQDLIEKNP---LRHW 164

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI--SEALSLT 177
           KK+   PR   +     L+    +   H         +  + + +  G+R   SE  +L 
Sbjct: 165 KKAKEHPRD-TKLTVADLMKIKAVAAPHL--------AWAIEIAWNLGVRTGESELFALK 215

Query: 178 PQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
             ++   QST+++   K    R++P+ P     + E       +  +       R ++  
Sbjct: 216 WADVDWAQSTVKVFATKTKSARVIPISPEFMARLKEMQGRAKTEYLIEYAG---RPVKQF 272

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296
            ++        R   +   +P     + +RH  AT LL  GGDL ++  ++GH  +  T 
Sbjct: 273 RMS-------FRSACKRAEIPYHVVLYDIRHLLATTLLQEGGDLSAVSKLMGHSSVHMTA 325

Query: 297 -IYTNVNSKNGGDWMMEI 313
             Y ++        + ++
Sbjct: 326 NQYYHLLGDEKRRTIAKL 343


>gi|168187849|ref|ZP_02622484.1| phage integrase [Clostridium botulinum C str. Eklund]
 gi|169294306|gb|EDS76439.1| phage integrase [Clostridium botulinum C str. Eklund]
          Length = 397

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 126/349 (36%), Gaps = 69/349 (19%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP      L +  + WL    +   L   + + Y+   R++++         I    + +
Sbjct: 66  LPSDDKITLQQWFKTWLYEFRV-NNLKPSSFERYDGIYRKYIL------NSPIGEIKLSE 118

Query: 66  LSYTEIRAFISKRRTQKIGDR---SLKRSL-----SGIKSFLKYLKKRKITTESNILNMR 117
           L   +I+ + +      I      ++   L     S +K    Y    K+ T        
Sbjct: 119 LRAKDIQTYYNNLYDNGISSSVINTINGFLYTCLESALKQNYIYQNYCKLVT-------- 170

Query: 118 NLKKSNSLPRALNEKQ--ALTLVD-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
                  LP+ + + +    TL D N+ L+     K+  A   A+   L        E L
Sbjct: 171 -------LPKIVKDDKFTVFTLQDQNIFLNNIQGHKYEMAFILALGTGLRL-----GELL 218

Query: 175 SLTPQNIMDDQSTLRI------------------------QGKGDKIRIVPLLPSVRKAI 210
            L   +I  D +TL +                              IR VP+  ++ + +
Sbjct: 219 GLKWSDIDFDNNTLSVSRAIKRTTIINKQGDRKSQIIEQLPKTKTSIRTVPIPTNIMEKL 278

Query: 211 LEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            EY          N  L      +F    G PL+P    R  + + +  GL      H+L
Sbjct: 279 KEYKQKHSVIKKENEDLYNNTDYIFCDKLGNPLDPKRIPRNFKSVLKKAGL-KDIKFHSL 337

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
           RH++AT L   G  ++++Q+++GH  ++TT  IYT+V  +       +I
Sbjct: 338 RHTYATRLFEVGVPIKTVQTLMGHSDITTTMNIYTHVMPEEKNKAAEKI 386


>gi|189353108|ref|YP_001948735.1| integrase [Burkholderia multivorans ATCC 17616]
 gi|189337130|dbj|BAG46199.1| integrase [Burkholderia multivorans ATCC 17616]
          Length = 397

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 61/361 (16%), Positives = 122/361 (33%), Gaps = 59/361 (16%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           +I +   L   + WL         +  T Q+Y  +  + L++      + ++  ++    
Sbjct: 40  QIAATNDLDAVRAWLARFVD----TPTTFQNYRKEAERLLLWAVIACGKPLS--SLTHED 93

Query: 68  YTEIRAFI-------------SKRRTQK----------IGDRSLKRSLSGIKSFLKYLKK 104
               R F+              ++  +           +   S ++++  + +   +L +
Sbjct: 94  LVVYRQFLLAPAPADVWCANGGRKHPRGDPRWRPFYGPLSAASQRQAMVILNAMFSWLVQ 153

Query: 105 RKITTESNIL--NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA--IL 160
                 + +     R  + +  + R L       + D +      + +     + A  + 
Sbjct: 154 AGYLAGNPLALSRQRQRRPAPRITRHLGPPLWQAVKDAIAALPRDDARASFHADRARWVF 213

Query: 161 YLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            LLY  GLRI+EA   T             D+  L + GKG + R+VP    +   +  Y
Sbjct: 214 TLLYLGGLRITEAAETTMGRFFCRRDASGRDRWWLDVTGKGGRRRLVPATDELMTELARY 273

Query: 214 YDLCPFD----LNLNIQLPLFRGIRGKPLNPGVFQRYIRQL---------------RRYL 254
                       + +  L L  G   +PL      R ++Q+                   
Sbjct: 274 RRAHGLAPLPVADEDTPLVLPFGQARRPLTRAALHRIVKQVFRHAAERLRAQGDAGAEQA 333

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            +    +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +         E +
Sbjct: 334 RVLEQASAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHADDDWRHRETEEKH 393

Query: 315 D 315
            
Sbjct: 394 R 394


>gi|331683085|ref|ZP_08383686.1| putative lambdoid prophage Qin defective integrase [Escherichia
           coli H299]
 gi|331079300|gb|EGI50497.1| putative lambdoid prophage Qin defective integrase [Escherichia
           coli H299]
          Length = 426

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/320 (12%), Positives = 101/320 (31%), Gaps = 53/320 (16%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT-EEKITIQTIRQLSYTEIRAFISK 77
           + +L   E E  ++K +L +Y    +  L  +        I  + + ++    +  +   
Sbjct: 86  EKFLALKETE--VAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLTGYQIP 143

Query: 78  RRTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +             ++   ++ + +  ++        ++    +  LK+S ++P  L+ +
Sbjct: 144 KSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPDPLSRE 203

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + + L+D      +            +  +    G+R  E  +L  ++I     T+ I+ 
Sbjct: 204 EFIRLIDACRNQQAKN----------LWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRR 253

Query: 193 KGDKIRIVPLLPSV--------------------------RKAILEYYDLCPFDLNLNIQ 226
              K R                                  ++ I++ Y         +  
Sbjct: 254 NLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVYLREYGRTEKHKC 313

Query: 227 LPLF-------RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
             +F           G        ++      +  GL    +  + RH++A   L+ G +
Sbjct: 314 TFVFQPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQS-RHTYACWSLTAGAN 372

Query: 280 LRSIQSILGHFRLSTT-QIY 298
              I + +GH       Q+Y
Sbjct: 373 PAFIANQMGHADAQMVFQVY 392


>gi|293396900|ref|ZP_06641174.1| phage integrase family site-specific recombinase [Serratia
           odorifera DSM 4582]
 gi|291420371|gb|EFE93626.1| phage integrase family site-specific recombinase [Serratia
           odorifera DSM 4582]
          Length = 372

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 88/250 (35%), Gaps = 34/250 (13%)

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILNMRNLKKSNSLPRALNEK 132
           + S++        ++    S +      L +    +  + + NMR    +      L   
Sbjct: 147 YFSEKWKNGAEPVTVNLEQSYLSGMFSELARLGEWSQPNPLENMRKFTVAEKEMAWLTHA 206

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           Q + L+       S            ++ +    G R  EA +LT   I   + T  I+ 
Sbjct: 207 QIIDLLAACSRGDSDLP--------LVVEVCLSTGARWREAENLTRSQITPHKITF-IRT 257

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R VP+  ++ +            L       LF           V    I+    
Sbjct: 258 KGKKNRSVPISKALYE-----------KLTTRGDGRLF-SECYFRFMAAVENTSIQ---- 301

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              LP     H LRH+FA H + +GG++  +Q ILGH  +  T  Y ++  ++    +  
Sbjct: 302 ---LPKGQLTHVLRHTFAAHFMMSGGNILVLQRILGHHDIKMTMRYAHLAPEHLETAL-- 356

Query: 313 IYDQTHPSIT 322
              Q +P  T
Sbjct: 357 ---QFNPLAT 363


>gi|282877655|ref|ZP_06286470.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|307566135|ref|ZP_07628592.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|281300227|gb|EFA92581.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|307345147|gb|EFN90527.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 422

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 59/315 (18%), Positives = 122/315 (38%), Gaps = 32/315 (10%)

Query: 14  LLKERQNWLQNLEIERGL--SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ--LSYT 69
           LL+E + +++      GL  +K T  +Y   T+     +  Y  E++ ++ IR   L Y 
Sbjct: 110 LLEEARLFIEEKRPCVGLTIAKPTFANYIYATQ----LIEAYLRERLGLEDIRYSLLDYG 165

Query: 70  EIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            I       ++++ +   +++  +  ++  +   +++K        + +  +  +   R 
Sbjct: 166 FIEGMDFYLKSERNLSLATIQVVVIFLRKLIGIGQQKKYIRIDPFADYKA-ELPHRTRRY 224

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQ 185
           L  ++   ++   ++    E          +       GL   +   L P++     D  
Sbjct: 225 LTTEELQRVLQTPIIDKQFERA------RQLFIFCAFTGLARVDMQRLKPKHITHNADGT 278

Query: 186 STLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
             +RI + K D   I+PLLP  ++ +  Y        +      +F       L      
Sbjct: 279 EEIRIKRQKTDVEAIIPLLPIAKQILSLYI------KDKKADDLIFPN-----LTIRKAS 327

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
                + +   +    T H  RH+F+T   LSNG  + ++  ILGH  + TTQIY  +  
Sbjct: 328 FACVNIGQICRIDKGLTFHMARHTFSTTICLSNGISMETLSKILGHSNIGTTQIYGKITD 387

Query: 304 KNGGDWMMEIYDQTH 318
               + M  + D+ H
Sbjct: 388 HKIQEDMTALTDREH 402


>gi|283797039|ref|ZP_06346192.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
 gi|291075455|gb|EFE12819.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
 gi|291528287|emb|CBK93873.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
 gi|291534519|emb|CBL07631.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
          Length = 432

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 60/350 (17%), Positives = 130/350 (37%), Gaps = 76/350 (21%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR---------RTQ 81
           LS  T+ +Y       L  +    +  I  + ++ ++   ++ F+            +++
Sbjct: 82  LSNGTVGNY-------LQAVNRIKQHPIGNRKLKTVTSEHLQKFMDLLAFGGEEGNFKSK 134

Query: 82  KIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                 ++   + ++   ++    ++  T + +  +   +K+       ++      V N
Sbjct: 135 GYTIDYIRSFHAVLQQSFRFAVFPKQYITFNPMQYVVMRRKAEEDVDLFSDNDEDAEVIN 194

Query: 141 VLLHTSHET--KWIDARNS-AIL--YLLYGCGLRISEALSLTPQNIMDDQSTLRIQG--- 192
            +    ++T  ++++ RN  A+L   + Y  GLR+ E   L+  +I  ++  L ++    
Sbjct: 195 PITPEQYQTLMEYLEERNKPAVLPVQIAYYTGLRLGEVCGLSWSDINFEEQYLTVRRSVR 254

Query: 193 -------------KGDKIRIVPLLPSVRKAILE-------------------YYDLCPFD 220
                        K  K+RIV    ++   + +                   YY      
Sbjct: 255 YNGARHKTEIGPTKRKKVRIVDFCDTLADILKKAKKEQRKQVFSYGELYQRNYYREVKEK 314

Query: 221 LNLNIQLPLFRGIRGKPLN-----------------PGVFQRYIRQLRRYLG-LPLSTTA 262
             +  +L    G    PL+                 P   +  +R  R+ L  L  +   
Sbjct: 315 NRIYYELYHLDGTEDIPLDYNEIDLVCIRPDGAYEAPATVETALRTARKRLSELDDNFHF 374

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMM 311
           HTLRH++ T+LLSNG   + +Q +LGH  +STT  +Y + N +   +   
Sbjct: 375 HTLRHTYTTNLLSNGAAPKDVQELLGHSDVSTTMNVYAHANREGKRNSAR 424


>gi|148978334|ref|ZP_01814839.1| Hypothetical bacteriophage integrase [Vibrionales bacterium SWAT-3]
 gi|145962493|gb|EDK27771.1| Hypothetical bacteriophage integrase [Vibrionales bacterium SWAT-3]
          Length = 342

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/297 (16%), Positives = 102/297 (34%), Gaps = 42/297 (14%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           K T  +Y                 ++    + +++   +  +   R ++     +++R  
Sbjct: 75  KRTASNYRKKLDLVC--------RELGNPPVNKINNAMVSNWQLNRMSKGQSANTVRRLT 126

Query: 93  SGIKSFLKYLKKRK-ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           S + +    L +         + +++    + S    L   Q   L+  V  H       
Sbjct: 127 SCLSNVFTVLIETGDFNAPHPLKDLKQPAPNRSEMTYLTTYQIDALLSAVQSHPELSK-- 184

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211
                  I+ +    G R  E ++L P N+   +       K  K R VP+   + K + 
Sbjct: 185 -------IVDICLSTGSRWRETVTLKPMNLSPYRIRFT-NTKTGKPRTVPISEELYKKLQ 236

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
                  F  +   +L                            LP     H LRH+FA+
Sbjct: 237 TNVSGNLFSYDPQKELYEIMDSLEF------------------NLPKGQKVHVLRHTFAS 278

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           H + NGG++ +++ ILGH  ++ T  Y ++   +  D +     + +P    +D +N
Sbjct: 279 HFIMNGGNILTLKEILGHASITQTMAYAHLAPDHLIDAV-----KLNPLSRLRDPQN 330


>gi|159046240|ref|YP_001541912.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|159046542|ref|YP_001542212.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|157913999|gb|ABV95431.1| phage integrase [Dinoroseobacter shibae DFL 12]
 gi|157914301|gb|ABV95731.1| phage integrase [Dinoroseobacter shibae DFL 12]
          Length = 508

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 62/300 (20%), Positives = 120/300 (40%), Gaps = 21/300 (7%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P+ VS E  +   ++ + L  ERG++  T++ Y  +  ++L  L           T    
Sbjct: 210 PDDVSAEDPRLI-SFSEWLRRERGVAPETVRRYLNEVGRWLDSLG---------ATPEDY 259

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--S 124
               IR+ I  +  ++    S++++++ +++FL++   +     S +  + +  +    +
Sbjct: 260 DAAAIRSIILDQGEER-SQSSVRKTVTVLRAFLRFTIVQGACAPSLLHAVPSAVRRKLST 318

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           +PR +   +   ++ +    T  E +            L        +   L   +I   
Sbjct: 319 VPRTIPTAKIEEILASCRTDTPVEIRDRAILLLLARLALRA-----GDIWQLHLSDIDWR 373

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV-F 243
            S LR+ GKG +  ++PL   V  A+L Y +     +  N ++ L       PL      
Sbjct: 374 TSRLRLHGKGRRGVMMPLPQDVGDALLVYIEDARPVVASN-RVFLRVQAPFTPLRSSAEI 432

Query: 244 QRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
              + ++    G     T +H  RHS A+  L  G DL  I + L H    TT IY  V+
Sbjct: 433 AGIVSRVLSRGGFTDLPTGSHVFRHSLASAWLRGGADLDLIGAALRHTSRDTTAIYAKVD 492


>gi|150378363|ref|YP_001314957.1| phage integrase family protein [Sinorhizobium medicae WSM419]
 gi|150032910|gb|ABR65024.1| phage integrase family protein [Sinorhizobium medicae WSM419]
          Length = 310

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/265 (19%), Positives = 90/265 (33%), Gaps = 19/265 (7%)

Query: 46  FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR 105
              F+ +    ++     R ++   + +F            S       +  F +YL   
Sbjct: 33  LRAFVRYVERAQLDAPATRTMALDFVLSF-------GGAANSRATRHGVLSRFYEYLAVY 85

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
              TE+    +    ++   PR L+E +  +L+D     +           + ++ LL  
Sbjct: 86  DAQTETLERRVFPRSRAIPPPRILSESELASLIDACARISPD-IPLRGRTMATLIGLLAS 144

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
            GLR  E + L   ++      L +Q  K  K  +VP+  + + A+  Y           
Sbjct: 145 SGLRSGEVVRLDRTDVDLTNGVLLVQKTKFRKDCLVPVHTTTQAALRHYVRERDTAFPQP 204

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP--LSTTAHTLRHSFA------THLLSN 276
                F   RG  L+    +    ++R++ GL        H LRH FA       H    
Sbjct: 205 KDQAFFLSSRGNRLSATGLKNGFAEVRKFAGLDDGKPLRPHDLRHRFAVTRLSLWHQQRA 264

Query: 277 GGD--LRSIQSILGHFRLSTTQIYT 299
                L  + + LGH   S T  Y 
Sbjct: 265 NVQALLPLLATYLGHASYSDTAYYL 289


>gi|50119564|ref|YP_048731.1| putative phage integrase [Pectobacterium atrosepticum SCRI1043]
 gi|49610090|emb|CAG73530.1| putative phage integrase [Pectobacterium atrosepticum SCRI1043]
          Length = 340

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 54/310 (17%), Positives = 112/310 (36%), Gaps = 36/310 (11%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSL 88
            L + T  SY      F  F+           +  Q+++ ++  +     + + +   + 
Sbjct: 20  NLREATEISYRKVVSGFSRFMGETV-------SPAQITHRDVLKWRRNLLKERNLSTHTW 72

Query: 89  KRSLSGIKSFLKYLKKRKITTES-NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
              ++ +++   +  +R +  +  N  N   ++K     + L  +Q   +   +    + 
Sbjct: 73  NNKVAHMRAIFNFSIERNLIDQDKNPFNDAVVQKERKKKKTLTREQLTAIYLLMQRIETE 132

Query: 148 ETKWIDARNSAI---------LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198
           E   I     A+         L  L   G+R ++ L +  Q+I  D+  + ++ +G K  
Sbjct: 133 EPHAIWGLRCALYPAWYWLTVLDALRYTGMRQNQLLHIRLQDINLDEGYIELRLEGSKTH 192

Query: 199 IVPLLPSVRK--AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-------------GVF 243
               +P+VR+  A L                 LF   R                      
Sbjct: 193 REWRVPAVRQLRARLASLIARAKLAGAEPSDILFDVTRFMKSRRHKDEYQYDEARAQQAI 252

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIYTNVN 302
           + +  +L R  G     +AH  RH+ AT L+     +L  ++ +LGH  +STT  Y  +N
Sbjct: 253 RSFFNRLSRDCG--FLVSAHRFRHTLATELMKAPERNLLLVKDLLGHRNVSTTMEYVELN 310

Query: 303 SKNGGDWMME 312
            +  G  + +
Sbjct: 311 MEIVGRTLEK 320


>gi|34762220|ref|ZP_00143227.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27888181|gb|EAA25240.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 405

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/294 (18%), Positives = 107/294 (36%), Gaps = 41/294 (13%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T  SY  +T+  +  L ++ +E   ++ I        + +  +   + +   ++    + 
Sbjct: 106 TYSSYLSNTK--ISILPYFFKENKKLKDINTFDIQ--KYYFHELNVRGVSANTVIHYHNL 161

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +    KY +K  I T + +LN+   KK   + +  N +Q   +++  +L    +  ++  
Sbjct: 162 LSLTFKYAQKIGIITINPMLNVEKPKKVRYIAKVYNHEQIKEMLE--ILKKEDKVLYLGV 219

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI----------------- 197
             ++        GLR SE L L    I    +T+ I     +                  
Sbjct: 220 VITSFF------GLRRSELLGLKWSAINFVDNTMSIVHTVTETNLDGKNILIKKDKTKST 273

Query: 198 ---RIVPLLPSVRKAILEYYDLCPFDLNL-------NIQLPLFRGIRGKPLNPGVFQRYI 247
              R   L  S+++ +LE  +    +            +  ++    G+   P       
Sbjct: 274 AGLRSFVLPGSIKEMLLELKEEQKRNKERLGKGYYTKDEEYVYVNEGGELHKPKFLTNGF 333

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTN 300
           R+      L      H LRHS AT L  +  +++ IQ  LGH    TT  IY +
Sbjct: 334 RKFLAKHNLT-HIRFHDLRHSCATILCESNVNVKDIQMFLGHSSAKTTMDIYVH 386


>gi|291561494|emb|CBL40293.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4]
          Length = 399

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 58/324 (17%), Positives = 118/324 (36%), Gaps = 49/324 (15%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-Q 81
           + + ++ G+   T+  Y+              +E      I ++  ++ +A++ K +   
Sbjct: 90  KYVSLKTGVRHNTVAGYKTVINML-------KKESFGNLRIDKVRLSDAKAWLIKLQQID 142

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKKSNSLPRALNEKQALTLVDN 140
             G  S+      ++   +      +  ++     + ++  ++S+      +        
Sbjct: 143 GRGYSSIHSIRGVLRPAFQMAVDDDLLRKNPFEFELASVIVNDSV----TREAITRKQQR 198

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---------- 190
            LL    E K       AI Y+L+  GLRISE   LT   I   +  +++          
Sbjct: 199 DLLKFIQEDKHFSRYYDAI-YILFHTGLRISEFCGLTVSEIEYGEMRIKVDHQLQRTAQM 257

Query: 191 ------QGKGDKIRIVPLLPSV----RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                       IR VP+  +V    R+ I          +       LF      P+  
Sbjct: 258 QYVIEEPKTDKGIRYVPMTEAVAACFRRIIANRKTPKVEPMVEGYAGFLFLDKNDMPMVA 317

Query: 241 --------GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                    + Q+Y +  R  +      T H  RH+F +++  +G + +++Q I+GH  +
Sbjct: 318 LHWEKYLEHIIQKYNKIYRIQM---PKVTPHVCRHTFCSNMAKSGMNPKTLQYIMGHADI 374

Query: 293 STT-QIYTNVNSKNGGDWMMEIYD 315
           S T   YT+VN  +  +   E+Y 
Sbjct: 375 SVTLNTYTHVNFDDAKE---EVYR 395


>gi|288916875|ref|ZP_06411248.1| integrase family protein [Frankia sp. EUN1f]
 gi|288351760|gb|EFC85964.1| integrase family protein [Frankia sp. EUN1f]
          Length = 476

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 59/282 (20%), Positives = 111/282 (39%), Gaps = 47/282 (16%)

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  RS++   + +++ L    + ++ + +    ++  K      R+L++++A   V  
Sbjct: 196 KPLSARSVRYLHAILRTALADAMREELVSRNVAELVQPPKSVKGAARSLSDEEARKAVAV 255

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
            L+           RN+A+  ++   GLR  EAL+L    +  D  T+ I  K  + R  
Sbjct: 256 ALVD----------RNAALWLVILALGLRKGEALALRWDVVDLDAGTVAIVRKQRRRRSH 305

Query: 201 P---------------------------LLPSVRKAILEYYDLCPFDLNLNIQLP----L 229
                                       L   V   + E+            +      +
Sbjct: 306 IDPETGVQRWELVEDDELKTAGSRARLALPTMVVTVLREHRRRQEKARAEACEWADPGLV 365

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F    G  ++P    R+  ++     +P  T  H LRH+ A+ L S G DL  I+++L H
Sbjct: 366 FTSATGNRIDPRNVNRWWDKVCERAEIP-HTRVHDLRHTAASLLFSAGVDLNEIRALLRH 424

Query: 290 FRLSTT-QIYTNVNSK---NGGDWMMEIYDQTH-PSITQKDK 326
            RL+TT  IY ++  +   +    M +I  + H PS T  D+
Sbjct: 425 TRLATTADIYVDILDEVRRSTARSMDDILTRLHRPSTTDSDE 466


>gi|94442270|dbj|BAE93634.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 46/91 (50%)

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            E+     F        P    IR   L+    Q+ +++  R  G+      HTLRH FA
Sbjct: 71  REFKWQFLFPSGRLSADPYGGRIRRHHLHESTLQKSVKKAARGCGINKRVGCHTLRHCFA 130

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           THLL    D+R++Q +LGH  +STT IYT+V
Sbjct: 131 THLLEANHDIRTVQELLGHAHVSTTMIYTHV 161


>gi|307710326|ref|ZP_07646767.1| phage integrase family protein [Streptococcus mitis SK564]
 gi|307618918|gb|EFN98053.1| phage integrase family protein [Streptococcus mitis SK564]
          Length = 388

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 103/298 (34%), Gaps = 34/298 (11%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           +K  ++ Y       L     Y  +K+T   I+     ++  +         G +   + 
Sbjct: 93  AKNNIKKY------LLPAFGDYKLDKLTPPIIQH----QVNQWAIDYNQLGKGYQQYNQL 142

Query: 92  LSGIKSFLKYLKKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
            +  K  L Y    ++   +   ++    R  K+   L + L++      +D +      
Sbjct: 143 HALNKRILSYAVSLQVIASNPASDIIVPRRKPKQGQKL-KYLDDDNLKKFLDYLDQL--- 198

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK------------GD 195
              + +  ++ +   L   GLRI E L+L   +I     ++ +                 
Sbjct: 199 PNTYKNFSDTVLYKTLLATGLRIRECLALKWSDIDLQNGSISVTKTLNTLKEITSPKSKS 258

Query: 196 KIRIVPLLPSVRKAILEY--YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
            IR + L       +  Y                 LF          G  +  + +  + 
Sbjct: 259 SIREIALDTKTVLMLRLYKARQSQIGREIGVTFEKLFSDTFDNYREAGALRFRLEKHLKL 318

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWM 310
            G P   + H  RH+ A+ LL+ G   + IQ+ LGH ++S T   Y++++ +N    +
Sbjct: 319 AGCPR-LSFHAFRHTHASILLNAGLPYKEIQTRLGHAKISVTMDTYSHLSKENQKRAV 375


>gi|255692358|ref|ZP_05416033.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|260621985|gb|EEX44856.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 291

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 112/285 (39%), Gaps = 30/285 (10%)

Query: 35  TLQSY-ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKRSL 92
           T ++Y   +  +  +      E K++   +++++ T I  F    R + ++ + +  + +
Sbjct: 9   TQKTYSRYELTKQRMIEFLQKEYKLSDIPVKEITVTHIENFYLYLRQECEVSNNTAMKFV 68

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
               + L + +K  ++      N +    K        L +++  T+      +   ++K
Sbjct: 69  QRFHTILLFAQKSGLSFIDPFGNFKFNFDKTDRG---YLTQEEIDTIY-----YKEFKSK 120

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI----MDDQSTLRIQGKGDKIRIVPLLPSV 206
            ++    A ++  Y  GL   +  +L+ ++I       +  ++ +GK      +PLL   
Sbjct: 121 RLEHVRDAFIFSCY-TGLPYCDIYTLSSEDIKIGVDGKKWIMKDRGKTGVESFIPLLQIP 179

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
              + +Y            +  L  G     ++      Y+ ++     +    T H  R
Sbjct: 180 LDILAKY------------EGKLKNGKLLPVISNQKMNEYLAEIAAICQINKRITYHLAR 227

Query: 267 HSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           HSFAT   L+ G  + S+  +LGH  + TTQIY  V  +     M
Sbjct: 228 HSFATEICLTKGVPIESVSKMLGHTNIQTTQIYARVVDRKLSHDM 272


>gi|90961218|ref|YP_535134.1| Phage integrase [Lactobacillus salivarius UCC118]
 gi|90820412|gb|ABD99051.1| Phage integrase [Lactobacillus salivarius UCC118]
          Length = 381

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 100/278 (35%), Gaps = 37/278 (13%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           +  + I Q++  E +  I+   +  + +   K   + I    KY K+ KI T+    ++ 
Sbjct: 103 LGNKKINQITTIECQDLINYWYSIPLKN--YKAIFNLITRIFKYAKQLKIVTDDPTSSVI 160

Query: 118 NLKKSN------SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
             K S                +  T ++    H  H+          +  LL   G+R S
Sbjct: 161 IPKASRQFNNLEHSRNYYTRDELKTFLEYAEKHEKHKI-------YVLFRLLAFSGMRKS 213

Query: 172 EALSLTPQNIMDDQSTLRIQGK--------------GDKIRIVPLLPSVRKAILEYYDLC 217
           EAL+LT  +I  +++ + I                     R V +       + E+    
Sbjct: 214 EALALTWNDIDFEKAQITINKTIILVSKVKVTTPKTKSSNRTVFIDKKTVSILREWRLSQ 273

Query: 218 PFDLNLNIQLPL------FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
             +L       L      F       + P    + + ++     L    T H LRH++AT
Sbjct: 274 KKELLQKGFNALSPNQLVFPDKNNHYIIPTTISKMMNRVSEGSNLH-HITVHGLRHTYAT 332

Query: 272 HLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
                G  ++ +Q+ LGH ++  T  +YT++  +   D
Sbjct: 333 LAAQGGMSVKQLQAQLGHSKVEITLDVYTSITDEQRKD 370


>gi|46202173|ref|ZP_00208415.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1]
          Length = 371

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 60/315 (19%), Positives = 111/315 (35%), Gaps = 52/315 (16%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
                +F+  +A    + I  +T +    T  R        +    R++      +   L
Sbjct: 73  RKVIEKFMNDVALGKIKSIGAKTAKNRGRTNTRG------GRGAATRTIGL----LGGIL 122

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA- 158
            +  K      + ++ ++  K + +  R L+ ++   L D VL       +  +    A 
Sbjct: 123 AFGVKEGEIPSNPVIGIKRFKDTKNE-RFLSGEELAKLGD-VLRQAEANFRAWEVARKAW 180

Query: 159 -----------------------ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
                                  ++ LL   G+R  EAL+L    +  +   L++     
Sbjct: 181 EGDGRQGKAPVRPSNAEAPAAIGVIRLLALTGMRRGEALALDWGEVDFEYGLLQLADSKT 240

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
             + VPL  + R+ +          L       +FRG  G P+  G       ++R+  G
Sbjct: 241 GRKSVPLGAAARQLLAAIPKPEGGGL-------VFRGPSGGPV--GGLPHIWERIRKRAG 291

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS---KNGGDWMME 312
           L      H LRHS+A    S G  L  + +ILGH   +TTQ Y ++ +   +   D + +
Sbjct: 292 LD-GVRLHDLRHSYAAVGASGGQSLPILGAILGHSDTATTQRYAHLTASPVQAAADLISK 350

Query: 313 IYDQT---HPSITQK 324
                    P+   K
Sbjct: 351 NIAAALDGRPAAKPK 365


>gi|330896140|gb|EGH28361.1| Phage integrase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 461

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/305 (16%), Positives = 110/305 (36%), Gaps = 36/305 (11%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ--KIGDRSL 88
           L   T++ Y   T+ ++ F       + T            R  +  RR++  +I  RS 
Sbjct: 7   LRPDTVKIYRAATKAYVNFFGECLACETTH-----------RDMLEWRRSELARISKRSW 55

Query: 89  KRSLSGIKSFLKYLKKRKITT--ESNILNMR-----NLKKSNSLPRALNEKQALTLVDNV 141
               S +++  +Y  +  +     + + + R       KK+      +  +  L  +   
Sbjct: 56  NTYSSHLRTVYRYAMEHGLVELKVNPLKDTRVMPTKRPKKTIGNDVIVRARNWLRFLVQE 115

Query: 142 LLHTSHETKWIDARNS-AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKI 197
            L T   ++   A    A+    Y  G+R++  L L  +N+   Q  +R++G   K  + 
Sbjct: 116 ELSTGKRSEITPAWFWLAVFETFYYTGIRLNALLCLRYENVDLGQRLIRVRGETEKTHRE 175

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-----LNPGVFQRYIRQLRR 252
            ++P+   +   ++   D                           +N    +   ++L  
Sbjct: 176 FMIPIPDGLMPHLVLVMDTAKKVGFSGTDQVFNINRFSGHYKREYMNSDQVEAMYKKLTN 235

Query: 253 YLGLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             G     T H  RH+ A+ L+     ++   +++L H  ++TT  Y     +   D M 
Sbjct: 236 MTG--TRMTPHRFRHTIASELMRQPERNIHITKNLLNHSNIATTMEYI----EPDYDLMR 289

Query: 312 EIYDQ 316
           E+ ++
Sbjct: 290 EVMNE 294


>gi|229000692|ref|ZP_04160210.1| DNA integration/recombination/inversion protein [Bacillus mycoides
           Rock3-17]
 gi|228759053|gb|EEM08081.1| DNA integration/recombination/inversion protein [Bacillus mycoides
           Rock3-17]
          Length = 387

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/301 (18%), Positives = 114/301 (37%), Gaps = 37/301 (12%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFL-------IFLAFYTEEKITIQTIRQLSYTEIRAF-- 74
           + + E+ +   +   Y  D  QF         FL    ++    +  R L    IR +  
Sbjct: 73  HFDKEKRIKDNSRVLYARDLSQFYFFVTKSTEFLQQDVKDYEDDRIWRNLRKRHIRNYQR 132

Query: 75  ------ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN--LKKSNSLP 126
                 +S +  +K    ++ R L  I+S+LK+L + +   E   + + +  + K +   
Sbjct: 133 WLSEEAVSYQSKEKYKASTISRKLGVIRSYLKWLYEIQYIQEPLHVEILSTTVNKHHKPK 192

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-- 184
           R L+ ++   L+              +  N A+L +L   GLR++E      +++  D  
Sbjct: 193 RELSYEEVKQLLHYYK---------DNEINYALLSVLATTGLRVAEVAHAKWEDLEYDDI 243

Query: 185 --QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNP 240
             +  L +  KGD  RIV +   +   I+ +       +N+  +    +F+         
Sbjct: 244 RGRYYLTVDTKGDNERIVSINKEIFNRIVAFRIRRRLPINIGNKNGGTIFQTKNHSAYRE 303

Query: 241 GVFQRYIRQLRRYLGLPL----STTAHTLRHSFATHLLS-NGGDLRSIQSILGHFRLSTT 295
               +Y+ ++ +   L        T H  RH +  +L    G     I + +GH    TT
Sbjct: 304 NYLSQYVSKVIKDTKLAFTENIRITPHFFRHFYVQYLYDYKGLAPHIIAAAVGHKNDRTT 363

Query: 296 Q 296
           +
Sbjct: 364 K 364


>gi|261350691|ref|ZP_05976108.1| site-specific recombinase, phage integrase family
           [Methanobrevibacter smithii DSM 2374]
 gi|288861474|gb|EFC93772.1| site-specific recombinase, phage integrase family
           [Methanobrevibacter smithii DSM 2374]
          Length = 359

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/362 (15%), Positives = 122/362 (33%), Gaps = 70/362 (19%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           I + EL      +L+  +  + L+  T++    +  QF+ +L     E++    +++   
Sbjct: 2   IATKELSGYLDEYLEEKQEIKNLTSETIKKQTFNINQFISYLENEGIEELDSTNVKK-QL 60

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI-------LNMRNLKK 121
              R +    + +     ++K  +  I  F+   + ++      I       + + + + 
Sbjct: 61  RHYRRY--CLKGRGNKRTTVKTYMMNILEFINSEEVQEEIQHDPIKMKDIIEVKVEDPET 118

Query: 122 SNSLPR--ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           +       +LN +Q+  L++ + L         +AR+ AI       G+R+ E + L   
Sbjct: 119 AKKRIEKISLNSQQSDFLLETIELSG-------NARDYAICSTFLDSGIRLKELVGLNKS 171

Query: 180 NIM--DDQSTLRI-----------------QGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           +I    D++   I                      K R   +      +I +        
Sbjct: 172 DIQVPLDENGFYILPDDVNSYIELHLRAETTKGQSKDRTTFITYDTLASINDMIYDRITK 231

Query: 221 LNLNI------------------QLPLFRGIRGKPLNPGVFQRYIRQLRRY--------- 253
           L  N                   +  LF   +GK +     Q  I++  +          
Sbjct: 232 LRKNTYDVYRPVIQRKKAEAEKTREELFLNQKGKRIGKRAVQEVIKKYAKLSDERIANEN 291

Query: 254 ----LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
               +    + + H LRH+  +H       +  +QSI GH    TT  Y +V+ ++    
Sbjct: 292 IDCPVNYGKNVSVHILRHTALSHYAEI-LTVAEVQSIAGHSNSQTTDKYIHVDREHIKQK 350

Query: 310 MM 311
           + 
Sbjct: 351 LK 352


>gi|126667758|ref|ZP_01738726.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126627861|gb|EAZ98490.1| phage-related integrase [Marinobacter sp. ELB17]
          Length = 211

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 70/176 (39%), Gaps = 10/176 (5%)

Query: 10  VSFELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
              E     Q +  + L  ++ +S  T+ +Y    +  L ++   T +   +  +  +  
Sbjct: 7   APTEFGALLQRFFAERLIQQQNVSPRTVAAYRDTFKLLLNYVGRATGKPPAMLALCDVDA 66

Query: 69  TEIRAFISKRRTQKIGD-RSLKRSLSGIKSFLKYLKKR---KITTESNILNMRNLKKSNS 124
             +  F++   T++    R+    L+ +++F  Y+  +    +     IL +   +    
Sbjct: 67  ALVLNFLTHLETERHNTIRTRNARLAAVRAFAHYVASQAPPALHLAQQILAIPMKRFERP 126

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +   L+  +   L     L     T W   R++A+L +LY  G R+SE + +   +
Sbjct: 127 MLEFLSRDEVRAL-----LAAPGITTWCGRRDTAMLTVLYNTGARVSELIGIRVAD 177


>gi|312868643|ref|ZP_07728837.1| site-specific recombinase, phage integrase family [Lactobacillus
           oris PB013-T2-3]
 gi|311095852|gb|EFQ54102.1| site-specific recombinase, phage integrase family [Lactobacillus
           oris PB013-T2-3]
          Length = 282

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 86/252 (34%), Gaps = 15/252 (5%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           I+ ++  + + FI+    +    +S+K+    ++  ++         +     +      
Sbjct: 20  IKDITRGQYQEFINW-YGKDHAPQSVKKLNMAVRGCVRSAILDDYLIKDFTQGVTLTAND 78

Query: 123 NSLPRA--LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           +   +   LN  +   L++     T          +  ++      G+R+SE  +LT ++
Sbjct: 79  SKRVKVDYLNLAEIKQLIE----ATQAGITRHRYTSRYMILTAIYTGMRLSEIQALTWKD 134

Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPS------VRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
           I     T+ I    +                  K   +   L            +F    
Sbjct: 135 IDFIHHTISINKSWNAADRSFKPTKNKSSVRTIKINHKLIALLKQLAASRQSNLVFMNQY 194

Query: 235 GKPLNPGVFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           G         + +R L   L +       H+LRHS    LL+ G D+ +I   LGH   +
Sbjct: 195 GTVPTSNAVNKTLRSLLEALNIHRSGFHFHSLRHSHVALLLAKGVDIYAISKRLGHSNTA 254

Query: 294 TT-QIYTNVNSK 304
           TT QIY  +  +
Sbjct: 255 TTSQIYAYLIDE 266


>gi|154487092|ref|ZP_02028499.1| hypothetical protein BIFADO_00932 [Bifidobacterium adolescentis
           L2-32]
 gi|154084955|gb|EDN84000.1| hypothetical protein BIFADO_00932 [Bifidobacterium adolescentis
           L2-32]
          Length = 425

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 106/354 (29%), Gaps = 48/354 (13%)

Query: 1   MEGNNL-PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59
           ME   L P   S  L    + WL+   +   +   T   Y     +    +     E I 
Sbjct: 69  MERTGLLPGAKSPYLKDYAERWLEEYRL--NVKPTT---YRTRAGRIHACM-----EVIG 118

Query: 60  IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119
              +  L+   IR  +    ++++   +LK     +K  L   +  ++        ++  
Sbjct: 119 CIRLTDLTPDHIRKCMRVL-SKRLAPSTLKDHFVSLKMMLDQAELEELIPVDPCRRVKPP 177

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS-----AILYLLYGCGLRISE-- 172
           +   +  R L+  Q   L++ V    +         +       +  L +  G+R  E  
Sbjct: 178 RVEPTETRILSPDQPKQLIEAVPNRGAKRRGPALTVDVDESWMLLFELAFAAGMREGERY 237

Query: 173 ------------ALSLTPQNIMDDQS----------------TLRIQGKGDKIRIVPLLP 204
                          +  Q  +                       +     K        
Sbjct: 238 ALMPYELEQRDGVPGINVQQQIQQYGKPEDAVIPAWLKAEHLYGILWLTTPKTHAAHRFV 297

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
            +  ++ +        L +  +  +F   RG P+     +    +  +   LP   T H+
Sbjct: 298 PISTSLWQRLWARIKRLGIGPRDLIFTNSRGNPVRSSTERYNWNKALKAASLP-PVTIHS 356

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
            RH  A+          +  +I+GH  ++ T  YT+ ++ +    + +     H
Sbjct: 357 ARHWTASMTARANMPDDARTAIMGHTSITMTNHYTHRDTASLAALLDQAIPDLH 410


>gi|153805897|ref|ZP_01958565.1| hypothetical protein BACCAC_00137 [Bacteroides caccae ATCC 43185]
 gi|149130574|gb|EDM21780.1| hypothetical protein BACCAC_00137 [Bacteroides caccae ATCC 43185]
          Length = 452

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 54/301 (17%), Positives = 117/301 (38%), Gaps = 39/301 (12%)

Query: 46  FLIFLAFYTEEKITIQTI--RQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYL 102
           F  FL    +      +I    ++   + A+I  RR  ++  D ++  SL+ I     Y 
Sbjct: 156 FQTFLRSTKQGTYRADSIYVGDITPELLDAYILWRREIKQNSDATINHSLTPILKACAYA 215

Query: 103 KKRKITTESNILNMRNLKKSNSLP----------RALNEKQALTLVDNVLLHTSHETKWI 152
            +  +   S    +++++    +           ++LN++Q L L++             
Sbjct: 216 CEMGMLEPSVNARIQDMRIITKVSLSEEESEFDGKSLNKEQLLALLEYY-------KTCP 268

Query: 153 DARNSAILYLLY----GCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSVR 207
           + R    L + +     CGLR+ + ++L   +I  ++  LR I  K +K  ++PL     
Sbjct: 269 EPRRREFLEIFFFAFHACGLRVVDVMTLQWGHINFEKKELRKIMIKTNKRHVIPLTEQAI 328

Query: 208 KAILEYYDLC----------PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
             + ++ +              +L+L+    L++             + +  +   +GLP
Sbjct: 329 SILRQWQEKREGCKYVFNLVKEELDLDDAEALYKARNNA---TKCINQSLVVVGEQIGLP 385

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQ 316
            + + H  RHSFA   L+ G  +  +  +LGH     T+ +Y     +     +  + D+
Sbjct: 386 FNLSMHVARHSFAVFALNKGLSMTVVSRLLGHGSTDVTEKVYARFLPETLSSEVARLKDE 445

Query: 317 T 317
            
Sbjct: 446 F 446


>gi|92114009|ref|YP_573937.1| phage integrase [Chromohalobacter salexigens DSM 3043]
 gi|91797099|gb|ABE59238.1| phage integrase [Chromohalobacter salexigens DSM 3043]
          Length = 397

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 63/343 (18%), Positives = 122/343 (35%), Gaps = 55/343 (16%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           K    WL+  +     S  T ++Y  +  + L++L    E   T+ ++R+ +      F+
Sbjct: 48  KAVAAWLREFQT----SPQTWRAYRKEAERLLLWLECRGE---TLASVRRETLDAFERFL 100

Query: 76  SKRR--------------------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
           +  +                     Q +   S +++L  ++    +L +      +    
Sbjct: 101 ADPQPASRWVGPSRPRAAPDWRPFRQPLSAASRRQALVILQGMFAWLVEAGWVEHNPFRL 160

Query: 116 MRNLKK---------SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
           MR+ ++            L RAL ++    L        ++  ++  AR   +    Y  
Sbjct: 161 MRDKRRRMDNRREGVERYLERALWQRFWAWLQTPPASEATNAQRYRWARRRFLFGFAYLL 220

Query: 167 GLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
             R+SE  +    + +  +     ++ GKGDK+  VP+ P +   ++++ +      +  
Sbjct: 221 APRLSEMATAQMGDFIQREGRWWWQVVGKGDKLAHVPVPPDMLSLLVDWRETLGLAPHPQ 280

Query: 225 IQL--PLFRG---------IRGKPLNPGVFQRYIRQL-----RRYLGLPLSTTAHTLRHS 268
                PL R           +   L    FQ   R L      R   L    T H LRH+
Sbjct: 281 PGDATPLLRALDGRRGVGDNQLYRLIRETFQLGYRALDDLPDARRAPL-RHATPHWLRHT 339

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
             TH    G +LR +     H RL TT  Y +  ++     + 
Sbjct: 340 ALTHQAQAGVELRYLARTARHARLDTTARYLHAEAEEWHRQLA 382


>gi|89147650|gb|ABD62684.1| integrase [uncultured bacterium]
          Length = 163

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 44/89 (49%)

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +     F    + + P         ++    QR ++   R  G+      HTLRH+FATH
Sbjct: 74  WAWQFVFPSAQSCRDPYTGRWVRFHVHEKTLQRTVKMATRLAGIAKPVGCHTLRHAFATH 133

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           LL  G ++R +Q ++GH  + TT IYT+V
Sbjct: 134 LLEAGHNIRVVQELMGHKDVETTMIYTHV 162


>gi|324997698|ref|ZP_08118810.1| phage integrase family protein [Pseudonocardia sp. P1]
          Length = 437

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/350 (16%), Positives = 105/350 (30%), Gaps = 80/350 (22%)

Query: 20  NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
            WL +L         T+++      ++    A Y EE    + +  +S  + R F +   
Sbjct: 84  AWLDSLTG-------TIKA--RTLAEYRRLYAHYAEEPFATRPVGSISPADARTFRAGLV 134

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS---LPRALNEKQALT 136
            + +  +++       +  L           +   ++  L+  ++    P  L  +Q   
Sbjct: 135 ERGLSRKTVVNVFDVFRRVLDAAVTDGALPSNPAHSLPRLRDGDAQPFAPHPLTSEQVAA 194

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKG 194
           + D++                 ++  L   GLR  E   L   ++       ++ ++   
Sbjct: 195 VSDHIGARYP--------IYGFVVLFLACTGLRTGELAGLEIGDVRLAGRGGSIAVRRTK 246

Query: 195 DKIRIVP---------------LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI------ 233
            K+R                  L   +   +  Y        + + + PLF         
Sbjct: 247 RKVRGGWETGTPKSRKSRRTVPLDGWLADDLRAYL--ATHPRSGDPEAPLFPARYGYRSK 304

Query: 234 ---------------------RGKPLNPGVFQ-RYIRQLRRYLGLP------------LS 259
                                   P++PG     Y R   R +GLP              
Sbjct: 305 GVARSILVATVEHPATLDSYNWTAPVDPGTLYSNYFRPALRAVGLPASAPATDDAPAIRG 364

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGD 308
              H LRHSFA   L+ G     +   LGH    TT  IY +   ++ G 
Sbjct: 365 VRLHDLRHSFAVLSLTAGAHYMQVSKWLGHESFVTTLTIYGDYIDEDEGK 414


>gi|312128949|ref|YP_003996289.1| integrase family protein [Leadbetterella byssophila DSM 17132]
 gi|311905495|gb|ADQ15936.1| integrase family protein [Leadbetterella byssophila DSM 17132]
          Length = 421

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/309 (16%), Positives = 111/309 (35%), Gaps = 29/309 (9%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
            + +++ + +   +  S+ T   Y+        F+      +      R+L+   IR F 
Sbjct: 119 DQNEDFERMVSKGKR-SQNTYNKYKTVYNHLSEFIRERYHRE--DMAFRELTSDFIREFD 175

Query: 76  SKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
              R  ++    ++      + +  +   K+ +  ++   +   +    +    L ++  
Sbjct: 176 FFLRIDKECTHNTVWVYTMPVIALAELAIKKGLIRQNPFEDYE-ISMEETDRSYLLKEDV 234

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRIQ 191
             L+    L    ++K+   ++  I       GL   +   L   N     D    +  +
Sbjct: 235 ERLM----LLKPSKSKYELVKDLFIFSCF--TGLSYIDIQKLKWSNIQSFFDGHQWIISR 288

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQL 250
            K   +     L  + K I+E Y              + R     P+ +      ++++L
Sbjct: 289 RKKSDVASNVRLLEIPKRIIEKYRG------------VTRNEYVFPVPSNATCNSHVKKL 336

Query: 251 RRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
                +      T HT RH+FAT  L+ G  L S+  ++GH  +STTQIY  + S+    
Sbjct: 337 IEEAEIITEQKVTFHTARHTFATMFLTEGVPLESLSKMMGHKNISTTQIYAKITSQKISK 396

Query: 309 WMMEIYDQT 317
            M  +  + 
Sbjct: 397 DMDLVSHKF 405


>gi|307545892|ref|YP_003898371.1| site-specific recombinase, phage integrase family [Halomonas
           elongata DSM 2581]
 gi|307217916|emb|CBV43186.1| site-specific recombinase, phage integrase family [Halomonas
           elongata DSM 2581]
          Length = 352

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 54/303 (17%), Positives = 113/303 (37%), Gaps = 16/303 (5%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L    + +L ++   +     T +S        +  L  Y+   +T + I     T + +
Sbjct: 61  LEAALKRYLADVTPTKK--PSTQKSERHKANTLIEHLGKYSLAALTPELIANFRDTRLNS 118

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT--TESNILNMRNLKKSNSLPRALNE 131
               RR Q I   +++  L+ +        +      T + + N+R         R L+ 
Sbjct: 119 --LGRRGQPISANTVRLELALLGHLYTVAIQEWGLGLTYNPVQNIRKPSPGEGRDRRLSA 176

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            +   L   +  H++    W       I  +    G+R SE L+LT   +   +  +R+ 
Sbjct: 177 DEEKRLFAVLRQHSNPMLAW-------IARIALETGMRSSEILTLTRSQVDVKRRVVRLT 229

Query: 192 GKGDKI-RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
              +   R+VPL  +  +   +  +      + ++      G  GK   P  + +   Q 
Sbjct: 230 DTKNNEARLVPLTQAATEVFKQALNNPVRPFDCDLVFFGEPGKDGKR-GPYAYTKLWNQA 288

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           ++  GL      H LRH   + L+  G   + + +I GH  +   + YT++ +++    +
Sbjct: 289 KKQAGLD-DFRFHDLRHEAVSRLVEAGLSDQEVATISGHKSMQMLRRYTHLRAEDLVGKL 347

Query: 311 MEI 313
             I
Sbjct: 348 DNI 350


>gi|223369794|gb|ACM88766.1| integrase [uncultured bacterium]
          Length = 163

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 65/162 (40%), Gaps = 37/162 (22%)

Query: 177 TPQNIMDDQSTLRIQ-GKGDKIRIVPLLP---SVRKAILEYYDLCPFDLNLNIQLP---- 228
             +++  D   + +  GKG K R   L        K ++E   L   D NL    P    
Sbjct: 1   RVKDLDFDNGCITVHDGKGGKSRNSLLPTRLIPAIKQLIEQARLIQQDDNLQGVGPSLPF 60

Query: 229 -----------------LFRG-----------IRGKPLNPGVFQRYIRQLRRYLGL-PLS 259
                            +F             +    L+  V ++ ++   +  G+    
Sbjct: 61  ALDRKYPSAYRQAAWMFVFPSSTLCNHPYNGKLCRHHLHDSVARKALKAAVQKAGIVSKR 120

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T H  RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHIFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|148642062|ref|YP_001272575.1| integrase-recombinase protein [Methanobrevibacter smithii ATCC
           35061]
 gi|148551079|gb|ABQ86207.1| integrase-recombinase protein [Methanobrevibacter smithii ATCC
           35061]
          Length = 359

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/362 (15%), Positives = 122/362 (33%), Gaps = 70/362 (19%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           I + EL      +L+  +  + L+  T++    +  QF+ +L     E++    +++   
Sbjct: 2   IATKELSGYLDEYLEEKQEIKNLTSETIKKQTFNINQFISYLENEGIEELDSTNVKK-QL 60

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI-------LNMRNLKK 121
              R +    + +     ++K  +  I  F+   + ++      I       + + + + 
Sbjct: 61  RHYRRY--CLKGRGNKRTTVKTYMMNILEFINSEEVQEEIQHDPIKMKDIIEVKVEDPET 118

Query: 122 SNSLPR--ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           +       +LN +Q+  L++ + L         +AR+ AI       G+R+ E + L   
Sbjct: 119 AKKRIEKISLNSQQSNFLLETIELSG-------NARDYAICSTFLDSGIRLKELVGLNKS 171

Query: 180 NIM--DDQSTLRI-----------------QGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           +I    D++   I                      K R   +      ++ +        
Sbjct: 172 DIQVPLDENGFYILPDDVNSYIELHLRAETTKGQSKDRTTFITYDTLASLNDMIYDRITK 231

Query: 221 LNLNI------------------QLPLFRGIRGKPLNPGVFQRYIRQLRRY--------- 253
           L  N                   +  LF   +GK +     Q  I++  +          
Sbjct: 232 LRKNTYDVYRPVIQRKKAEAEKTREELFLNQKGKRIGKRAVQEVIKKYAKLSDERIANEN 291

Query: 254 ----LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
               +    + + H LRH+  +H       +  +QSI GH    TT  Y +V+ ++    
Sbjct: 292 IDCPVNYGKNVSVHILRHTALSHYAEI-LTVAEVQSIAGHSNSQTTDKYIHVDREHIKQK 350

Query: 310 MM 311
           + 
Sbjct: 351 LK 352


>gi|146279751|ref|YP_001169909.1| hypothetical protein Rsph17025_3738 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557992|gb|ABP72604.1| hypothetical protein Rsph17025_3738 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 384

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/284 (18%), Positives = 113/284 (39%), Gaps = 26/284 (9%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           +++ I   L   T + Y  + ++F++         +   T+  ++  ++  F    R   
Sbjct: 107 EHIAI--RLKASTGKEYRRNLQRFIL-------PALGQLTVTGITRADVAKFHHDLRHIP 157

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                  R L  I       +   +  +  +   ++R   +     R L+  +   + + 
Sbjct: 158 YQA---NRCLEVISKMFSLSEMWGLRPDGTNPRKHIRKYPEEKRE-RFLSAAELRRIGEV 213

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
           +    +   +   A  +A   LL   G R++E +SL    +  D   LR+       ++V
Sbjct: 214 LREMEAEGVELPSAILAA--RLLILTGCRLNEIISLKWSYVDFDVPALRLPDSKTGAKVV 271

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
            +   V + + +   +      +   LP      GKPL+    Q + +++R   G+    
Sbjct: 272 HVGQPVVELLRDAQRIDGNPWVIAGTLP------GKPLSD--LQPFWQRVRARAGV-KDV 322

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
             H LRH+FA+  +++G  L  I  +LGH ++ TT  Y ++ ++
Sbjct: 323 RIHDLRHTFASTAVASGQGLPMIGKLLGHTQVQTTARYAHLAAE 366


>gi|309777756|ref|ZP_07672705.1| putative integrase/recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914522|gb|EFP60313.1| putative integrase/recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 260

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 79/204 (38%), Gaps = 20/204 (9%)

Query: 115 NMRNLKKSNSL----PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
            ++  K    +       L  K+   L+       +   K  + +   +L  +   G+R+
Sbjct: 58  RVKLHKLQKKIFHDDKHNLTRKEYERLL-------AAAKKKGNDQLVMLLQTICSTGIRV 110

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
           SE   +T + +    + +R +GK   IR +     +++ ++ Y           I   +F
Sbjct: 111 SEIRFITVEALKKGSAVIRNKGK---IREILFPAKLKQTLIRYCRDRDI-----INGAVF 162

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
              +G  L+     R ++ L  Y  + P     H LRH FA        DL  +  +LGH
Sbjct: 163 LTSQGNHLDRSNVWRMMKNLCAYASVDPEKVFPHNLRHLFAYTFYRMEKDLVRLADLLGH 222

Query: 290 FRLSTTQIYTNVNSKNGGDWMMEI 313
             + TT+IYT  + +     +  +
Sbjct: 223 SSIETTRIYTKTSIQACQKMIDRM 246


>gi|228994446|ref|ZP_04154308.1| DNA integration/recombination/inversion protein [Bacillus
           pseudomycoides DSM 12442]
 gi|228765287|gb|EEM13979.1| DNA integration/recombination/inversion protein [Bacillus
           pseudomycoides DSM 12442]
          Length = 387

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/301 (18%), Positives = 114/301 (37%), Gaps = 37/301 (12%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFL-------IFLAFYTEEKITIQTIRQLSYTEIRAF-- 74
           + + E+ +   +   Y  D  QF         FL    ++    +  R L    IR +  
Sbjct: 73  HFDKEKRIKDNSRVLYARDLSQFYFFVTKSTEFLQQDVKDYEDDRIWRNLRKRHIRNYQR 132

Query: 75  ------ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN--LKKSNSLP 126
                 +S +  +K    ++ R L  I+S+LK+L + +   E   + + +  + K +   
Sbjct: 133 WLSEEAVSYQSKEKYKASTISRKLGVIRSYLKWLYEIQYIQEPLHVEILSTTVNKHHKPK 192

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-- 184
           R L+ ++   L+              +  N A+L +L   GLR++E      +++  D  
Sbjct: 193 RELSYEEVKQLLHYYK---------DNEINYALLSVLATTGLRVAEVAHAKWEDLEYDDI 243

Query: 185 --QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNP 240
             +  L +  KGD  RIV +   +   I+ +       +N+  +    +F+         
Sbjct: 244 RGRYYLTVDTKGDDERIVSINKEIFNRIVAFRIRRRLPINIGNKNGGTIFQTKNHSAYRE 303

Query: 241 GVFQRYIRQLRRYLGLPL----STTAHTLRHSFATHLLS-NGGDLRSIQSILGHFRLSTT 295
               +Y+ ++ +   L        T H  RH +  +L    G     I + +GH    TT
Sbjct: 304 NYLSQYVSKVIKDTKLAFTENIRITPHFFRHFYVQYLYDYKGLAPHIIAAAVGHKNDRTT 363

Query: 296 Q 296
           +
Sbjct: 364 K 364


>gi|326407441|gb|ADZ64512.1| phage integrase [Lactococcus lactis subsp. lactis CV56]
          Length = 343

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/292 (17%), Positives = 116/292 (39%), Gaps = 28/292 (9%)

Query: 33  KLTLQSYECDTRQF-LIFLAFYTEEKITIQTIRQLSYTEIR----AFISKRRTQKIGDRS 87
             T++      + + L  L  Y  EKIT   ++ +     R    A I     +K   + 
Sbjct: 38  ANTIRINSNFLKNYILPALGNYKVEKITTVLLQNIVNDWARNANTAEIVNGNREKGKSKD 97

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLK---KSNSLPRALNEKQALTLVDNVLLH 144
            K  L+ IK  L Y  +  + +++  + + + K   ++    +  N  +    +  +   
Sbjct: 98  YKLLLNIIKRILDYGMQLGVISDNPAIKVFSPKLKTRTVKKIKYFNNDELKRFLAYLD-- 155

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------------- 191
            S ++   + +++ +  LL   GLRI EAL+L+  +I    +T+ +              
Sbjct: 156 -SLQSTTTNKKSATLYKLLLATGLRICEALALSWSDIDFVNNTVSVSKTLIQYSNEIQDS 214

Query: 192 -GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
               +  R+V +       + E+     +         +F   +       + ++++ + 
Sbjct: 215 AKTKESNRLVSVDSETISMLKEWRKHQNYGAISLHDSLVFSYHQKMR-TYELERQHLVRH 273

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNV 301
            +   +P +   H  RH+ A+ L++N  + + IQ  LGH   S T  +Y+++
Sbjct: 274 FKKAKVP-NIGFHGFRHTHASLLMNNDVNPKEIQMRLGHADYSITMNLYSHL 324


>gi|238920129|ref|YP_002933644.1| integrase family protein [Edwardsiella ictaluri 93-146]
 gi|238869698|gb|ACR69409.1| integrase family protein [Edwardsiella ictaluri 93-146]
          Length = 295

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 97/298 (32%), Gaps = 46/298 (15%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTE-----EKITIQTIRQLSYTEIRAFISKRRT---- 80
            LS L L+ YE   R          +      ++               +  +R      
Sbjct: 7   HLSDLILRWYELHGRMLSSGAGRKGKLDAICRRLGDPLAGDFDKGMFARYRERRLNGEWN 66

Query: 81  ----QKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
               +++ + ++ R  + + + F +  +  +    + +  +R  ++ +     L   +  
Sbjct: 67  PKGKKRLQEATVNREQAYLHAVFAELRRLGEWEGGNPLDGIRQFREGDQELAFLYADEIT 126

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L+      +  +          I+ +    G R SE  SL    ++  + T     K  
Sbjct: 127 RLLAACDASSKADLGG-------IVRVCLATGARWSEVQSLRQSQVLPGRLTFT-HTKSK 178

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
           K R VP+   ++  +               Q  LF                 +      G
Sbjct: 179 KNRTVPISERLQALL------------PTKQGRLFTPCYE----------AFKAALARAG 216

Query: 256 L--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           L  P     H LRH+FA+H +  GG++  +Q ILGH  ++ T  Y +    +    + 
Sbjct: 217 LHLPKGQRTHVLRHTFASHFMMQGGNILVLQQILGHSTITMTMRYAHFAPDHLDAALA 274


>gi|228470635|ref|ZP_04055491.1| putative integrase [Porphyromonas uenonis 60-3]
 gi|228307643|gb|EEK16622.1| putative integrase [Porphyromonas uenonis 60-3]
          Length = 423

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 108/277 (38%), Gaps = 26/277 (9%)

Query: 50  LAFYTEEKITIQTIRQ--LSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRK 106
           +  Y  E++ ++ IR   L Y  I       ++++ +   +++  +  ++  +   +++K
Sbjct: 144 IEAYLRERLGLEDIRYSLLDYGFIEGMDFYLKSERNLSLATIQIVVIFLRKLIGIGQQKK 203

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
                  ++ +  +  +   R L  ++   ++   ++    E          +       
Sbjct: 204 YIRIDPFVDYKA-ELPHRTRRYLTTEELQRVLQTPIIDRQFERA------RQLFLFCAFT 256

Query: 167 GLRISEALSLTPQNIM---DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           GL   +   +  ++I+   D    +RI + K D   I+PLLP  ++ +  Y        +
Sbjct: 257 GLARVDMQRIRLKHIIRNADGTEEIRIKRQKTDVEAIIPLLPIAKQILSFYI------KD 310

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLR 281
             +   +F       L           + +   +    T H  RH+F+T   LSNG  + 
Sbjct: 311 KKVDDLIFPN-----LTTRKASLACVNIGQICRIEKGLTFHMARHTFSTTICLSNGISME 365

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           ++  +LGH  + TTQIY  +      + M  + D+ H
Sbjct: 366 TLSKMLGHSNIGTTQIYGKITDHKIQEDMTALTDREH 402


>gi|226950013|ref|YP_002805104.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
 gi|226844233|gb|ACO86899.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
          Length = 310

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/281 (18%), Positives = 113/281 (40%), Gaps = 22/281 (7%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + ++  L++ +  S  T+++Y   T +F  FL F   + +       ++   I  +  + 
Sbjct: 18  EEYILYLQLNKR-SVWTIKTY---TEKFNSFLKFIGNDFLC----ADITEKVIENYKKEL 69

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
                 + S+   L+ +++   +  KR        + +  L+    +    ++++   L+
Sbjct: 70  LKTNR-ETSVNTHLTHLRTIFNFASKRGYMQN---VKINKLESQEKIKNVYSKEELERLL 125

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKI 197
                 T     ++  +   I+      GLR+SE  SL  +++    S +  +  K  K 
Sbjct: 126 LEEPRET-----FMQYQARVIIATFVSTGLRLSELTSLQIRDVDFHNSVIYSRHTKTKKS 180

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           RI+P+  S+R  ++E+      +   N +  LF    GK L     +  + +   +  + 
Sbjct: 181 RILPISTSLRSMLVEWISYRQAE---NEKDGLFCNSYGKTLKQATLRTLMYRYFDHKNV- 236

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
            S   H  R +F T+ +  G D+ S+  I GH  L     Y
Sbjct: 237 KSGGIHQFRRTFITYAVQQGVDIISLSRITGHQNLKILNKY 277


>gi|89147673|gb|ABD62695.1| integrase [uncultured bacterium]
          Length = 166

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/99 (35%), Positives = 53/99 (53%)

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
            P+  +     Y      L+ + +    +  R    N    Q+ +++  R  G+    + 
Sbjct: 67  YPNAAREWGWQYVFPSRQLSKDPRAGAEQRQRRHHANETWLQQEVKRAVRASGINKLASC 126

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           HTLRHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 127 HTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 165


>gi|320663643|gb|EFX30917.1| putative defective integrase; Qin prophage [Escherichia coli
           O157:H7 str. LSU-61]
          Length = 431

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/320 (11%), Positives = 99/320 (30%), Gaps = 53/320 (16%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT-EEKITIQTIRQLSYTEIRAFISK 77
           + +L   E E  ++K +L +Y    +  L  +        I  + +  +    +  +   
Sbjct: 91  EKFLALKETE--VAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLAVRKELLTGYQIP 148

Query: 78  RRTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +             ++   ++ + +  ++        ++    +  LK+S ++P  L+ +
Sbjct: 149 KSNYIVTQPGRSAVTVNNYMTNLYAVFQFGVDNGYLADNPFKGISPLKESRTIPDPLSRE 208

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + + L+D      +            +  +    G+R  E  +L  ++I     T+ I+ 
Sbjct: 209 EFIRLIDACRNQQAKN----------LWCVSVYTGIRPGELCALGWEDIDLKNGTMIIRR 258

Query: 193 KGDKIRIVPLLPSV--------------------------RKAILEYYDLCPFDLNLNIQ 226
              K R                                  ++ I++ +            
Sbjct: 259 NLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMALTRLSKEHIIDVHLREFGRTEKQKC 318

Query: 227 LPLF-------RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
             +F           G        ++      +  G+    +  + RH++A   L+ G +
Sbjct: 319 TFVFQPEVSAKVKNYGDHFTVDSIRQMWDAAVKRAGIRHRKSYQS-RHTYACWSLTAGAN 377

Query: 280 LRSIQSILGHFRLSTT-QIY 298
              I + +GH       Q+Y
Sbjct: 378 PAFIANQMGHADAQMVFQVY 397


>gi|289628817|ref|ZP_06461771.1| hypothetical protein PsyrpaN_27380 [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
          Length = 482

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/333 (15%), Positives = 115/333 (34%), Gaps = 44/333 (13%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M    LPE+    +L               L   T++ Y   T+ ++ F       + T 
Sbjct: 1   MNTMTLPELTQEYILTH------------DLRPDTVKIYWAATKSYVRFFGTRLASETTH 48

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT--ESNILNMRN 118
           + +      E+         ++I  RS     S +++  +Y  +  +     + +     
Sbjct: 49  RDMLDWRRAEL---------ERISKRSWNTYSSHLRTVYRYAMEHGLVELKVNPLKETHV 99

Query: 119 LKKSNSLPRALNEKQALT------LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
           +           +           LV       +           A+  + Y  G+R++ 
Sbjct: 100 IPAKRPKKTVNTDAIVRARNWLNILVQEERATGNRTEITPAWFWLAVFEMFYYTGIRLNA 159

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVP-------LLPSVRKAILEYYDLCPFDLNLNI 225
            + L   +I   Q  +R++G+ +K            L+P +++ +     +     +   
Sbjct: 160 LICLRYADIDLGQRLIRVRGETEKTHREFMIPIPDGLMPHLKRLMDIAQRVGFDPCDQIF 219

Query: 226 QLPLFRGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRSI 283
            +  F G   +P +N    +   ++L    G+    T H  RH+ A+ ++     ++   
Sbjct: 220 NVNRFSGHYSRPQMNADQVEAMYKKLTAMTGV--RMTPHRFRHTIASEMMRQPERNIHIT 277

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +++L H  ++TT  Y     +   D M E+ ++
Sbjct: 278 KNLLNHSNIATTMEYI----EPDYDVMREVMNE 306


>gi|218689499|ref|YP_002397711.1| putative defective integrase; Qin prophage [Escherichia coli ED1a]
 gi|218427063|emb|CAR07940.2| putative defective integrase; Qin prophage [Escherichia coli ED1a]
          Length = 431

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/320 (11%), Positives = 99/320 (30%), Gaps = 53/320 (16%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT-EEKITIQTIRQLSYTEIRAFISK 77
           + +L   E E  ++K +L +Y    +  L  +        I  + +  +    +  +   
Sbjct: 91  EKFLALKETE--VAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLAVRKELLTGYQIP 148

Query: 78  RRTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +             ++   ++ + +  ++        ++    +  LK+S ++P  L+ +
Sbjct: 149 KSNYIVTQPGRSAVTVNNYMTNLYAVFQFGVDNGYLADNPFKGISPLKESRTIPDPLSRE 208

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + + L+D      +            +  +    G+R  E  +L  ++I     T+ I+ 
Sbjct: 209 EFIRLIDACRNQQAKN----------LWCVSVYTGIRPGELCALGWEDIDLKNGTMIIRR 258

Query: 193 KGDKIRIVPLLPSV--------------------------RKAILEYYDLCPFDLNLNIQ 226
              K R                                  ++ I++ +            
Sbjct: 259 NLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMALTRLSKEHIIDVHLREFGRTEKQKC 318

Query: 227 LPLF-------RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
             +F           G        ++      +  G+    +  + RH++A   L+ G +
Sbjct: 319 TFVFQPEVSAKVKNYGDHFTVDSIRQMWDAAVKRAGIRHRKSYQS-RHTYACWSLTAGAN 377

Query: 280 LRSIQSILGHFRLSTT-QIY 298
              I + +GH       Q+Y
Sbjct: 378 PAFIANQMGHADAQMVFQVY 397


>gi|154150049|ref|YP_001403667.1| phage integrase family protein [Candidatus Methanoregula boonei
           6A8]
 gi|153998601|gb|ABS55024.1| phage integrase family protein [Methanoregula boonei 6A8]
          Length = 424

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 92/245 (37%), Gaps = 17/245 (6%)

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138
           R       ++   +  +K F  +       +E     +R++K  N +          T  
Sbjct: 104 RGTPFKQNTVADFIRFMKRFFMW-LSENGKSEIPEKKLRDIKPPNYVYDTKTADMIFTKE 162

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ--STLRIQGKGDK 196
           D   +  + +T      + AI+ +LY   LR  E  +L    ++     +T+ ++ K +K
Sbjct: 163 DIFGMLKACQTSR----DRAIIAVLYDGALRCGELGTLRWNQVVFTDVDATITVKFKTEK 218

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ-----RYIRQLR 251
            R++PL    R+ + ++ +  P +      + L  G           Q     + IR + 
Sbjct: 219 TRLIPLF-MAREYLAQWRNDYPGEPIGENFVFLTSGGGRNRTGRNQLQYSGIAKQIRNIA 277

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI---YTNVNSKNGGD 308
              G+    T H  RHS  THL+ +G     I  +LG    ST  +   Y +V   +   
Sbjct: 278 ERAGIKKHITPHLFRHSKITHLIQDGCQESMI-KLLGWGHTSTDMMDKCYGHVGPSDVKK 336

Query: 309 WMMEI 313
            M  +
Sbjct: 337 EMARL 341


>gi|134046510|ref|YP_001097995.1| phage integrase family protein [Methanococcus maripaludis C5]
 gi|132664135|gb|ABO35781.1| phage integrase family protein [Methanococcus maripaludis C5]
          Length = 341

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/309 (17%), Positives = 113/309 (36%), Gaps = 27/309 (8%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           EL  E + +L   E  R      + +   +     +FL F     +  Q   +  +    
Sbjct: 18  ELCPEFKKYLVEYEEARDEDNKQISTIRDNLASLGVFLMFCQNNNLHPQDFTKREFKAFF 77

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA---- 128
            ++ K+R   +  R  K+ L  + +F      + +      L+ R  ++ ++LP      
Sbjct: 78  KYLDKQRNCGVKTR--KKYLHMLSTFYYIQGYKNLFEYQ--LDSRKTRRYSNLPEIHYSK 133

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDA--------RNSAILYLLYGCGLRISEALSLTPQN 180
           +   +   + D +     ++ +   A        R+   +  L+  G R SE L+L   +
Sbjct: 134 ITPDEYDLIRDKLFEKIDYKKEDPYAGSSNFSRIRDLIAIETLWETGCRKSEVLNLKYID 193

Query: 181 IMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK--P 237
               + T  I + K    R VP    +  A+ E+           +   +F+  +    P
Sbjct: 194 FNKSKKTFTIVETKNYTEREVPFSDELAVALQEHMSKNKL---TGLDDYIFQNTQDPKKP 250

Query: 238 LNPGVFQRYIRQ----LRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +      +  ++    LR+   +       H+LRH+     L  G  +  +Q I GH  +
Sbjct: 251 IPSRHLSKIFKEVVDELRKESKIEGRRVVLHSLRHARIVLFLKEGMPIHEVQRIAGHDSI 310

Query: 293 STTQIYTNV 301
           +TT  Y ++
Sbjct: 311 NTTIGYAHM 319


>gi|94442298|dbj|BAE93648.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 51/112 (45%)

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
           + G G+      L      A   +     F  N     P    ++   ++    Q+ I++
Sbjct: 50  VDGYGETTLPYALARKYPSAAKSWMWQYAFPSNQRCFAPDLGTMKRHHVHQTSVQKAIKR 109

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                 +     +H  RHSFAT LL NG D+R+IQ +LGH  +STT IYT+V
Sbjct: 110 AVARCNINKRVGSHAFRHSFATRLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|187922278|ref|YP_001893920.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187713472|gb|ACD14696.1| integrase family protein [Burkholderia phytofirmans PsJN]
          Length = 405

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 98/256 (38%), Gaps = 27/256 (10%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNIL 114
           E +      + +      + ++R    I   ++ R  + +++ F +  + ++    + + 
Sbjct: 91  EAMGNPRADRFTADMFAEYRAQRLAAGITANNMNREQAYMRAVFNELKRLKQWKRANPLE 150

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           ++R  K   +    L   Q  TL+D +        +  +   + +  +    G R  EA 
Sbjct: 151 DLRAFKIQENELTFLTLPQVRTLLDEL-------PRGRNVHVTLVSMVCLATGARWGEAE 203

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
            L    + +      ++ K  K R VP+  S+ K +  ++        +           
Sbjct: 204 GLRISQVRNGVIQF-VKTKSSKARAVPISKSLAKGLHAHFRTHGEGERIF---------- 252

Query: 235 GKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                 G      R+  +   +  P     H LRH+FA+H + NGG++ S+Q  LGH  L
Sbjct: 253 ------GTAWSAFREGLQRAKIVLPKGQLTHVLRHTFASHFMMNGGNILSLQRALGHHSL 306

Query: 293 STTQIYTNVNSKNGGD 308
           + T  Y +++  +  +
Sbjct: 307 TMTMRYAHLSPDHLAE 322


>gi|71065049|ref|YP_263776.1| phage integrase [Psychrobacter arcticus 273-4]
 gi|71038034|gb|AAZ18342.1| possible phage integrase [Psychrobacter arcticus 273-4]
          Length = 357

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/295 (15%), Positives = 106/295 (35%), Gaps = 32/295 (10%)

Query: 21  WLQNLEI---ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           +L    +   +  +SK TL+ Y     ++  ++  + + +     I  ++  E+R  I+ 
Sbjct: 61  FLDYARLYLKQSDVSKATLREYAKSLDRY--WIPPWYQRE-----IHTITAKEVRTLIAD 113

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                  +++   +L  ++          +   + +  ++N K  +  P   +  +   L
Sbjct: 114 IIWS--SEKTRNNNLIPLRGVFGIALDDSVIHTNPVDKIKNTKHQSPPPDPFSRDEMERL 171

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI------- 190
           +    LH  H              L +  G+R  E L+LT  +I  D   +++       
Sbjct: 172 LTW--LHDKHGKDEAVYWLY--FELAFWTGMRTGELLALTWDDIDWDAGLIKVSKVMSDG 227

Query: 191 ----QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
               + K  + R V        A+     +     +     P F     +       +R 
Sbjct: 228 ELVNRTKTAEYRDVFFNARSEDALKRLKRIKSAVSDRLFMSPRFINSAWQ--TDKTPRRA 285

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTN 300
           + +  +  G+    T +T RH+F T+ L++G ++  +    GH  + T +  Y  
Sbjct: 286 LTEAMKATGIRHRAT-YTTRHTFITNCLTDGLNIYFVAKQTGH-SVRTLETRYAR 338


>gi|322387050|ref|ZP_08060661.1| phage integrase family site-specific recombinase [Streptococcus
           infantis ATCC 700779]
 gi|321142037|gb|EFX37531.1| phage integrase family site-specific recombinase [Streptococcus
           infantis ATCC 700779]
          Length = 377

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 112/325 (34%), Gaps = 53/325 (16%)

Query: 12  FELLKERQNWLQNLEIERGLS-KLTLQS-YECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           F+LL+E      +L+  R +S   T ++ YE   + +                + +L+Y 
Sbjct: 67  FDLLEE-----DDLKNGRKISYTSTQRNNYERHIKPYFK-----------DTNLNKLTYD 110

Query: 70  EIRAFISKRRT--------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            I  F    +T        + +   ++ + L  +K       ++ +  ++ + N+R L  
Sbjct: 111 HIFEFREYLKTKPKKQNENETLSYNTINKILILLKKIFDTGIRKSLIDKNPVENLRKLPI 170

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
                +  + ++     +   L    E  +          + +  G+R+ E L+L   +I
Sbjct: 171 RKPNIKFWSIEEFTRFRE---LIQDDEISYD-----LFFVIAFFTGMRMGEILALNWNDI 222

Query: 182 MDDQSTLRIQGK---------------GDKIRIVPLLPSVRKAILEYYDLCPFDLN---L 223
               +T+ +                      R + +   + + + ++       L     
Sbjct: 223 DLLTNTIYVTKTVYFVNNTSYINTTKTRSGTRNITINQKLAEMLKDWKVKQKEKLEEFTK 282

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
           N +           +   +  +  +Q+            H LRHS A+ L++ G D   +
Sbjct: 283 NTEELQIIQSTPITITKNMIDKKFKQILERDKDLKKIRIHDLRHSHASLLINQGEDYLVV 342

Query: 284 QSILGHFRLSTT-QIYTNVNSKNGG 307
           +  LGH  ++TT   Y+++      
Sbjct: 343 KERLGHASITTTIDTYSHLYPSKQK 367


>gi|283771168|ref|ZP_06344059.1| phage integrase [Staphylococcus aureus subsp. aureus H19]
 gi|283459762|gb|EFC06853.1| phage integrase [Staphylococcus aureus subsp. aureus H19]
          Length = 349

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 112/278 (40%), Gaps = 18/278 (6%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           + T + Y    +          + KI    + +++    + FI+    +   + +++++ 
Sbjct: 82  ENTYRHYRNALQH-------IQKHKIGKMELSKINRQVYQKFINDYSKEHAKE-TIRKTN 133

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             I+S L       +  ++    + N K         +E++    V    +   H  K  
Sbjct: 134 GAIRSALDDALYDGLIFKNPAYKV-NYKAGKP---TKSEQEKFISVTEYEILKDHVRKKR 189

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
              + A+  ++   G R+S A ++  ++I   ++T+ I  +        +  S+ K+ ++
Sbjct: 190 TRSSLALF-IMICTGCRVSGARNIKIEHINQVKNTIFIDERKTNTSPRYI--SIAKSDMK 246

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +         ++    +F+      +N       ++   R   +P+  T+H LRH+  ++
Sbjct: 247 HIMDVISTFAISYDGYIFKEAGSI-INLHAINNTLKSACRVNNIPI-ITSHALRHTHCSY 304

Query: 273 LLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDW 309
           LL+ G  +  I   LGH  ++ TT +Y+++  +   + 
Sbjct: 305 LLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEE 342


>gi|254994439|ref|ZP_05276629.1| bacteriophage integrase [Listeria monocytogenes FSL J2-064]
          Length = 286

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 95/250 (38%), Gaps = 24/250 (9%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
           ++ I+ + + +Y ++    +    ++    +       +K  +       +  ++    +
Sbjct: 48  ELKIKDLDRYTYQQLLNNYALTHEKQ----TTMDFHHHLKGAILDAVDEGVLNQNPTRKI 103

Query: 117 ----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
               +N +   +  + LN+ +   L+  + L       W        + L+   GLR SE
Sbjct: 104 VIKGKNPRPKKA--KFLNQFEVQVLLKELNLKEDINWDW-------FILLIIKTGLRFSE 154

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILEYYDLCPFDLNLNIQ 226
           AL+LTP +       + I    D   +             RK  +++     F   + ++
Sbjct: 155 ALALTPSDFDFSTQKISINKTWDYKMVTGSFQPTKNESSNRKIQIDWQLAMQFSQLIKMK 214

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
                      +        ++ L +   +P + T H+LRH+ A+ LL  G  + S+ + 
Sbjct: 215 DSDKPIFVKSRVFNSTINNRLKVLCQNANIP-TITIHSLRHTHASLLLFAGVSIASVANR 273

Query: 287 LGHFRLSTTQ 296
           LGH  ++TTQ
Sbjct: 274 LGHSSMTTTQ 283


>gi|227537674|ref|ZP_03967723.1| phage integrase family protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227242288|gb|EEI92303.1| phage integrase family protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 416

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 108/295 (36%), Gaps = 24/295 (8%)

Query: 28  ERGLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKR----RTQK 82
           E  L+  T+++Y         FL   Y +  + +  +      +  +F++        + 
Sbjct: 126 EHKLAAGTIKNYHTTESYIKKFLKESYKKNDLLLDELNFRFILDFESFLTNYKPIDHHKP 185

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           + +  + + +  ++  +                 + L+        L++++ L +++N  
Sbjct: 186 LNNNGIMKHMERLRKMINLAITMDWLERDPFAKYK-LRFEKVERGHLSKEE-LEILENKT 243

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRI 199
                    +D     +       GL   +  +L+ +NIM   D +  L  + +     +
Sbjct: 244 FSIERLQSVLD-----MFLFSCYTGLAYIDISNLSRENIMKGIDGKDWLMTKRQKTDTLV 298

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
              L      I++ Y   P         P+    R           Y++++    G+  +
Sbjct: 299 KVPLLYQASTIIKNYKEHPVAKASGTIFPVISNQRMNG--------YLKEIADICGISKN 350

Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            T H  RH+FAT + LSNG  + S+  +LGH  + TTQIY  V      + M  +
Sbjct: 351 LTFHLARHTFATTVTLSNGVPIESVSKMLGHTSIRTTQIYAKVLEHKLSEDMNNL 405


>gi|169350051|ref|ZP_02866989.1| hypothetical protein CLOSPI_00791 [Clostridium spiroforme DSM 1552]
 gi|169293264|gb|EDS75397.1| hypothetical protein CLOSPI_00791 [Clostridium spiroforme DSM 1552]
          Length = 312

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 62/290 (21%), Positives = 110/290 (37%), Gaps = 41/290 (14%)

Query: 45  QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK 104
             + +   Y  ++I    I       I  F +K   +K    +L      +KS L+Y + 
Sbjct: 35  HLIQYFGKYCLQQINDDII-------INYFQTKINEEKYSLSTLSTIRYVLKSILEYAQS 87

Query: 105 RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLY 164
           +      N   ++  KK N   + L   Q + L      H        +  + AIL  LY
Sbjct: 88  KYAIKCPNFNFIKLAKKKNDC-KVLTSDQIMLLGKYCFNH-------FEPISLAILLSLY 139

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
           G GLRI E   L  ++I  +   +R++      R+     S+ K  L   D         
Sbjct: 140 G-GLRIGEFSGLKWKDIDFENDLIRVERT--VERLKAPANSMTKTQLMLMDPKTATSKRI 196

Query: 225 IQLPLFRGIRGKPL--------------------NPGVFQRYIRQLRRYLGLPLSTTAHT 264
           I +P+F     K                      +P   Q    ++ +       +  H+
Sbjct: 197 IPIPVFVMEYVKKYYQHHAIDDEHFIYTNSKNISDPRSIQYSFHRICKLYN--FKSNFHS 254

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           LRH++AT+ + N  D++S+  +LGH ++STT  +Y + +       + +I
Sbjct: 255 LRHTYATNCVMNNIDIKSLSEMLGHSKVSTTLNLYVHSSLDFKKTQINKI 304


>gi|89147642|gb|ABD62680.1| integrase [uncultured bacterium]
          Length = 164

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/101 (37%), Positives = 51/101 (50%), Gaps = 1/101 (0%)

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           L      A  E+     F  +     P     R   L+    QR +RQ  R  G+    T
Sbjct: 63  LERKYLNAAREWAWQYVFPSDRVSDDPRSGRRRRHHLDEQGVQRAMRQALREAGIAKPAT 122

Query: 262 AHTLR-HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            H+LR HSFATHLL +G D+R++Q  LG+  + TTQIYT+V
Sbjct: 123 PHSLRRHSFATHLLESGADIRTVQEQLGYSDVRTTQIYTHV 163


>gi|329960976|ref|ZP_08299255.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328532262|gb|EGF59066.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 405

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 61/320 (19%), Positives = 121/320 (37%), Gaps = 33/320 (10%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           +L E   FE+ +E     + L +  G+SK TL       R    F+      K     +R
Sbjct: 106 SLKEKSLFEVFEEHNKEQEKL-VGNGVSKATLWVSVYTIRLLREFVQQKY--KRDDLYLR 162

Query: 65  QLSYTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
           +L+   I++F S  +  + +   S  + L  +K  +         + +     +  ++  
Sbjct: 163 ELNINFIQSFHSFLKIDKGMAQNSCTKHLKLLKKIINLSVANAYISFNPFTTYKVEREPV 222

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNI 181
            +   L+E++   +++            +     A    L+GC  GL   +  +LTP++ 
Sbjct: 223 EV-DFLDEEELRKIINF--------DTPLPRLERAKDMFLFGCFTGLSYIDIKTLTPEHF 273

Query: 182 MDD---QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
             D   +  ++ +     +     L  + K IL+ Y      L +               
Sbjct: 274 EKDSAGRIWIKKRRVKTGVLSRIPLLPIAKLILDKYKGGKKLLPIQ-------------- 319

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQI 297
           +P    +Y++ +    G+      HT RH+FA+ + L+N   L  +  +LGH     T  
Sbjct: 320 DPADINKYLKDIAILCGINKRICFHTSRHTFASTVTLANNISLEVVSKMLGHTNTRMTAH 379

Query: 298 YTNVNSKNGGDWMMEIYDQT 317
           Y  +  K  G+ M ++ D  
Sbjct: 380 YAKLIDKCIGEQMDKLMDTF 399


>gi|187251859|ref|YP_001876341.1| integrase family protein [Elusimicrobium minutum Pei191]
 gi|186972019|gb|ACC99004.1| Integrase family protein [Elusimicrobium minutum Pei191]
          Length = 337

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 95/251 (37%), Gaps = 29/251 (11%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKK 121
           +  ++  +I+ F +    +     +  R  S  ++ +      K+   ++  + +   + 
Sbjct: 97  VADITTEDIQKFYNDTWERT-SPSTANRHFSLFRAIINKALNLKLYKGQNPCIGVVRQRD 155

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           +    +   ++   +L    L+   +  K        I+      G R  E L+L  +++
Sbjct: 156 NPPRDKYFTKEDIKSL----LVTAENRLKP-------IIAFAVLTGCRKMEILNLRWKDV 204

Query: 182 MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
                 +RI   K  K R +PL   +R  +L  +         N Q  +F       +  
Sbjct: 205 DFYGGIIRITMSKSGKPREIPLANDLRPILLAMH--------TNPQDKVFN------ITV 250

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              +    +L + LG       HT RH+FA+  + N G++  +Q ILGH  +  T  Y++
Sbjct: 251 PALKYSFNKLLKKLGFE-GYCFHTCRHTFASLYMQNDGNITDLQRILGHATIELTMRYSH 309

Query: 301 VNSKNGGDWMM 311
            + +     + 
Sbjct: 310 FSPQYIQQTIK 320


>gi|123441995|ref|YP_001005978.1| P2-like phage integrase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088956|emb|CAL11767.1| P2-like phage integrase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 327

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 95/260 (36%), Gaps = 38/260 (14%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR---SLSGIKSFLKYLKKRKITTESNI 113
           K+      Q++ T    +   R  +    +++      L G+ S L  ++     +E  +
Sbjct: 92  KMGHPKASQITRTFFSDYRVLRLAEGKKAKTVNLDQEMLGGVFSVL--IELGHYHSEHPL 149

Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
             M+ +K        L   +  TL+             ++  +   + L    G R  E 
Sbjct: 150 KAMKKIKLPAQEMGFLTNDEIRTLL-----------SRLEGDHLKAVKLCLATGARWGEV 198

Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
             L  ++ +       +  K  K R VP+   + + + +               PLF+ +
Sbjct: 199 AKLR-RDEIIGNKVTYLDTKNSKNRTVPISHELCEQLTDGIKTG----------PLFKSL 247

Query: 234 RGKPLNPGVFQRYIRQLRRYL--GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
                       Y+R   + +  GLP     H LRH+FA+H + NGG++ ++Q ILGH  
Sbjct: 248 NYP---------YVRICVKEVAPGLPAGQAVHVLRHTFASHFMMNGGNILALQKILGHSN 298

Query: 292 LSTTQIYTNVNSKNGGDWMM 311
           +  T  Y +       D + 
Sbjct: 299 ILQTMNYAHFAPDYLEDAVR 318


>gi|161525981|ref|YP_001580993.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189349304|ref|YP_001944932.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
 gi|160343410|gb|ABX16496.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189333326|dbj|BAG42396.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
          Length = 188

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 17/191 (8%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           +   EK+   ++  + L      +    RN A++ L +  G+R+ E  +L   +++D   
Sbjct: 5   KTFTEKELKQVLTYISL------RRHALRNRAMVLLTHWAGMRVGEVAALLVGDVLDADG 58

Query: 187 TLRI-------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           +L+        Q KG   R V L   +R+ +  Y        N   + PLF   +     
Sbjct: 59  SLKSEIRLAPEQTKGRHARTVFLGQKLRRELAAYVAS---LKNPQPEQPLFYTQKRAGFT 115

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                +Y   L +  G+    ++H+ R SF T+L S G  +R + S+ GH  +STTQ Y 
Sbjct: 116 ANTLCQYFHWLYKGAGIQ-GASSHSGRRSFITNLASKGVGVRVLMSLAGHRDISTTQRYI 174

Query: 300 NVNSKNGGDWM 310
           +VN       +
Sbjct: 175 DVNDDMQRKAV 185


>gi|182418193|ref|ZP_02949493.1| putative tyrosine recombinase XerD [Clostridium butyricum 5521]
 gi|237666214|ref|ZP_04526201.1| site-specific recombinase, phage integrase family [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182378011|gb|EDT75551.1| putative tyrosine recombinase XerD [Clostridium butyricum 5521]
 gi|237658304|gb|EEP55857.1| site-specific recombinase, phage integrase family [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 198

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 78/190 (41%), Gaps = 10/190 (5%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R L + +   L   +  ++ H +     R+ AI  + Y CGLR +E   +   +    +S
Sbjct: 9   RYLTQDELRNLFYAIETYSGHNS----LRDLAIFRVAYRCGLRATEISLIKFDDYSIRKS 64

Query: 187 TLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
            L  +  KG +   + L    +  + EY          N    +F+  +  P++      
Sbjct: 65  ELYCKRLKGSRNNTIRLDLQTKNVLEEYISQKGI---YNSDEIIFKSQKNNPISRKTLDY 121

Query: 246 YIRQLRRYLGLPL--STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            +++  +   +        HT++H+ A HL  +  D++ IQ  LGH  ++ T+IY    S
Sbjct: 122 LMKKYCKLAKIDDVSKHHFHTIKHTTAVHLADSEMDIKEIQWWLGHKSVNNTEIYFQFTS 181

Query: 304 KNGGDWMMEI 313
           K       ++
Sbjct: 182 KQQERMYTKL 191


>gi|296114474|ref|ZP_06833127.1| integrase family protein [Gluconacetobacter hansenii ATCC 23769]
 gi|295978830|gb|EFG85555.1| integrase family protein [Gluconacetobacter hansenii ATCC 23769]
          Length = 307

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 92/292 (31%), Gaps = 32/292 (10%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           TL++Y  D   F  + A +    I        +  ++ A++    T      +++R L+ 
Sbjct: 22  TLRAYRADWTHFAAWCADHGIRPIPA------TAGDVAAYLESLHT--YAPATIRRRLAA 73

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           I    ++        E  I    +     + P+  +  + LT+     +    +      
Sbjct: 74  IGKMHRFNNLPWKVGEPVIRAALHAALEAAAPQVASPPEILTVAQLRAMVERCDDSARGR 133

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--------------GKGDKIRIV 200
           R+  +L   +   LR SE + L  +++      + ++                  +   +
Sbjct: 134 RDRCLLIFGFAGALRRSELVGLMVEDVRLTPGGVVMRIRDGAAPDPAAVAAAPVGEEVTM 193

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG------KPLNPGVFQRYIRQLRRYL 254
           P  P        +       +      PLFR I        + L P    R +++     
Sbjct: 194 PQRPDDLTLCPAHAFAAWQKVAHRQTGPLFRPISKGGRAGGRALTPFAVTRILQRRAALA 253

Query: 255 GLP----LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            L        +AH LR  +    LS G D+  ++    H        Y   +
Sbjct: 254 DLDAGYAARLSAHALRAGYIADALSRGIDVEEVRHHTRHRDPRAMLAYVRAS 305


>gi|224023433|ref|ZP_03641799.1| hypothetical protein BACCOPRO_00133 [Bacteroides coprophilus DSM
           18228]
 gi|224016655|gb|EEF74667.1| hypothetical protein BACCOPRO_00133 [Bacteroides coprophilus DSM
           18228]
          Length = 452

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 114/303 (37%), Gaps = 31/303 (10%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIK 96
                 F  FL    +      +I    ++   + ++I+ RR  ++  D ++  SL+ I 
Sbjct: 150 RSCMNIFQTFLRATKQATCGNDSIYVGDVTPELLDSYIAWRREVKQNTDATINHSLTPIL 209

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLP----------RALNEKQALTLVDNVLLHTS 146
               Y  +  I   +    +++++                ++LN++Q   L++       
Sbjct: 210 KACAYACEMNIMEPAINARIQDMRIITKTSLSEEESEFDGKSLNKEQMQALMEYYKTCQE 269

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPS 205
              K          +  + CGLR+ + ++L   ++  ++  LR I  K +K  ++PL   
Sbjct: 270 PRRK---EFLEMFFFAFHACGLRVVDVMTLQWGHVNFEKKELRKIMIKTNKRHVIPLTEP 326

Query: 206 VRKAILEYYDLC----------PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
               + ++ +              +L L+ +  L++             + +  +   +G
Sbjct: 327 AIHILRQWQEKREGCRYVFNLVKENLELDDEEALYKARNNA---TKCINQSLAVVGEQIG 383

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIY 314
           LP + + H  RH+FA   L+ G  +  +  +LGH     T+ +Y     +     +  + 
Sbjct: 384 LPFNLSMHVARHTFAVFALNKGLSMSVVSRLLGHGSTDVTEKVYARFLPETLSSEVARLK 443

Query: 315 DQT 317
           D+ 
Sbjct: 444 DEF 446


>gi|210630774|ref|ZP_03296598.1| hypothetical protein COLSTE_00483 [Collinsella stercoris DSM 13279]
 gi|210160370|gb|EEA91341.1| hypothetical protein COLSTE_00483 [Collinsella stercoris DSM 13279]
          Length = 308

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 81/210 (38%), Gaps = 16/210 (7%)

Query: 103 KKRKITTESNILN--MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
               +          ++  +      + LN+ +   ++ ++ L       W       ++
Sbjct: 90  VDEGLIPRDPTRKAIIKGKQPRAKKIKYLNQFELHAMLGDLNLSGGPSWDW-------LI 142

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEYYD 215
            ++   GLR SEAL LTP++      TL +    D       +P     SVRK  L++  
Sbjct: 143 LIVAKTGLRFSEALGLTPEDFDFAHQTLSVNKTWDYKNGGGFVPTKNASSVRKVQLDWQL 202

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
           +      L    P         +        + +  + +G P+  + H LRH+ A+ LL 
Sbjct: 203 IMQLSGLLKDLPPTEPIFVKGKVYNSTANGVLARHCKNVGAPV-ISVHGLRHTHASLLLF 261

Query: 276 NGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
            G  + S+   LGH  ++TTQ  Y +V  +
Sbjct: 262 AGVSIASVSRRLGHASMTTTQETYLHVIQE 291


>gi|188993958|ref|YP_001928210.1| putative bacteriophage integrase [Porphyromonas gingivalis ATCC
           33277]
 gi|188593638|dbj|BAG32613.1| putative bacteriophage integrase [Porphyromonas gingivalis ATCC
           33277]
          Length = 411

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/310 (15%), Positives = 114/310 (36%), Gaps = 30/310 (9%)

Query: 14  LLKERQNWLQNLEIERGLS-KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
             +  +++ +  +++ GL    T   Y    +    F+      +++   +++L+   I 
Sbjct: 113 FAQHNEDFFK--QVDAGLRCPSTYHKYCTVYKHLEEFIKNRY--RVSDIALKELTPAFIT 168

Query: 73  AFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
            F    RT+K   + ++   +  ++  +   +          ++  ++   ++    L +
Sbjct: 169 DFDIFLRTEKQCCNNTVWIYMMPLRRMITIAQNHGWIVRDPFVDY-SISAESTDRDYLTK 227

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQST 187
            +   L+D      S E          +       GL  ++  +LT  N           
Sbjct: 228 DEIRQLLDLKFRRKSMELA------RDLYVFCCFTGLSFTDMKNLTKDNLQTSFDGKLWI 281

Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           +  + K      + LL   ++ I +Y  +   +  L +   +               + I
Sbjct: 282 MTKRQKTGVESNIMLLDIPKQIIEKYDGMAKENFLLPVPQYI------------TACKNI 329

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306
           +++    G+    T HT RH+ AT   L+NG  + ++  +LGH  + TTQIY  +  +  
Sbjct: 330 KKIIGLCGIEKEITWHTSRHTMATEICLTNGVPIETLSKMLGHTNIRTTQIYAKITHEKE 389

Query: 307 GDWMMEIYDQ 316
              M  + D+
Sbjct: 390 SRDMAALSDK 399


>gi|299141363|ref|ZP_07034500.1| transposase [Prevotella oris C735]
 gi|298577323|gb|EFI49192.1| transposase [Prevotella oris C735]
          Length = 389

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/314 (16%), Positives = 98/314 (31%), Gaps = 47/314 (14%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P I   E +KE      ++E E  +S+ TL+  +C       F          IQ +  L
Sbjct: 114 PSISFIEYMKE------HIEAED-ISEGTLKHKQCTLNALKRFGK--------IQKLTDL 158

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           +   + AF          D  +      +K +   L             ++  +      
Sbjct: 159 TSNNLIAFDEWLHDGTRSDVGIHTYHKHLKKYCHLLYIEGKIKVDPYTQVKFKRGECKER 218

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             L E +   L    L     +          +       GL   +  +   + + + Q 
Sbjct: 219 EPLTEAELQKLRKIKLDDKLDKV-------RDLFVFSAYTGLAYCDVQAFDFEKMTEQQG 271

Query: 187 TLRI----QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
            L      + K       P+L    + + +Y  + P                   ++   
Sbjct: 272 KLYYIDGSRIKTASKFFTPILGPAMEVLKKYKFVLP------------------KISNQK 313

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV- 301
              ++  +   L L    T H  RHSFAT  L++   + ++  +LGH  + TTQIY  V 
Sbjct: 314 ANDFLHLIEAALKLNKPLTFHIARHSFATLALAHDIPIENVSRMLGHKNIRTTQIYAKVL 373

Query: 302 --NSKNGGDWMMEI 313
               +   + +   
Sbjct: 374 KTTIERHAENLQRA 387


>gi|225860049|ref|YP_002741558.1| integrase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229486|ref|ZP_06963167.1| integrase [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255139|ref|ZP_06978725.1| integrase [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298501793|ref|YP_003723733.1| bacteriophage integrase [Streptococcus pneumoniae TCH8431/19A]
 gi|307126177|ref|YP_003878208.1| integrase [Streptococcus pneumoniae 670-6B]
 gi|225728040|gb|ACO23891.1| integrase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237388|gb|ADI68519.1| bacteriophage integrase [Streptococcus pneumoniae TCH8431/19A]
 gi|306483239|gb|ADM90108.1| integrase [Streptococcus pneumoniae 670-6B]
          Length = 388

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 83/232 (35%), Gaps = 22/232 (9%)

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNS---LPRALNEKQALTLVDNVLLHTSHETKWI 152
           K  LKY    +    +   ++   ++        + L++      +   L    +   + 
Sbjct: 147 KRILKYAVSLQAIPFNPARDVIVPRRKEKEGQKLKYLDDDNLKKFL-TYLEQLPN--TYK 203

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK------------GDKIRIV 200
           +  ++ +   L   GLRI E L+L   +I     TL +                  IR++
Sbjct: 204 NFYDTVLYKTLLATGLRIRECLALKWSDIDLKNGTLDVNKTLNIIKEITGPKTKSSIRVI 263

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            L       +  Y                 +F     K ++  +    + +     G P 
Sbjct: 264 DLDNKTVLMLRLYKARQSQIGKEMGLTYEKVFSNSFDKHIDARMLSFRLVKHLERAGCPR 323

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDW 309
             T H  RH+ A+ LL+ G   + IQ+ LGH +LS T  IY++++  N  + 
Sbjct: 324 -FTFHAFRHTHASILLNAGLPYKEIQTRLGHAKLSMTMDIYSHLSKDNQKNA 374


>gi|84686691|ref|ZP_01014583.1| yld [Maritimibacter alkaliphilus HTCC2654]
 gi|84665365|gb|EAQ11843.1| yld [Rhodobacterales bacterium HTCC2654]
          Length = 369

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 61/305 (20%), Positives = 100/305 (32%), Gaps = 58/305 (19%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-----IGD 85
            S  TL++Y  D   F  +      E +        S   I  +++   +       +  
Sbjct: 63  ASDNTLKAYAKDWAHFARWCRMKGAETLPP------SPEMIGLYLADLASGAGPSPALSV 116

Query: 86  RSLKRSLSGI------KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            ++ R LSG+      + F    K R I T      +  +K+ ++ P    +K+A+   D
Sbjct: 117 STIDRRLSGLAWNYAQRGFALDRKNRHIATV-----LAGIKRKHARPPV--QKEAILADD 169

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP--QNIMDDQSTLRIQGKGDKI 197
            + +  +        R+ AIL L Y  GLR SE +SL     +  D    + +  KG  +
Sbjct: 170 ILAMVATLPFDLRGLRDRAILLLGYAGGLRRSEIVSLDVHKDDTPDSGGWVEVFDKGTLL 229

Query: 198 --------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK------- 236
                         R          A+ ++      D       P+F G           
Sbjct: 230 TLNAKTGWREVEIGRGSKDQTCPVHALEQWLHFAKIDFG-----PIFVGTSRDGKKALET 284

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG------GDLRSIQSILGHF 290
            LN     R I++     G+            F+ H L  G       D R +Q  LGH 
Sbjct: 285 RLNDKHVARLIKRTVLDAGIRSDLPEKDRLALFSGHSLRAGLASSAEVDERYVQKHLGHA 344

Query: 291 RLSTT 295
               T
Sbjct: 345 SAEMT 349


>gi|296110696|ref|YP_003621077.1| integrase [Leuconostoc kimchii IMSNU 11154]
 gi|295832227|gb|ADG40108.1| integrase [Leuconostoc kimchii IMSNU 11154]
          Length = 306

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 108/276 (39%), Gaps = 26/276 (9%)

Query: 41  CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLK 100
            D  Q           ++ +  + +L+Y ++    ++   ++    ++      ++  + 
Sbjct: 28  YDKYQLTHRHIKRLAAELKLSDLTRLTYQQLLNDYAENHERQ----TVLDFHRHVRGAII 83

Query: 101 YLKKRKITTESNILN--MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
              + ++          ++  K      + LN+ +   L++ + L+           +  
Sbjct: 84  DAVEEQLIDRDPTRKAILKGTKHRKHKTKYLNQFELRALLNELTLNDGVT------WDYF 137

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR------IVPLLPSVRKAILE 212
           IL L+   GLR SEAL LTP +    +  L +    D             + SVRK  L+
Sbjct: 138 IL-LIAKTGLRFSEALGLTPNDFDFSRQNLNVSKTWDYKSVVGDFAPTKNMSSVRKIQLD 196

Query: 213 YYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +  +  F     NL    P+F G +   +       ++ +  +   + +  + H+LRH+ 
Sbjct: 197 WQTVIQFSQLAKNLPDDKPIFAGDK--RIFNDTVNHFLERKCKQANISV-ISIHSLRHTH 253

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           A+ LL     + S+   LGH  ++TTQ  Y ++  +
Sbjct: 254 ASLLLYANVSIASVARRLGHSNMTTTQSTYLHIIQE 289


>gi|223369772|gb|ACM88756.1| integrase [uncultured bacterium]
          Length = 163

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRH 267
           A  +   +  F  +     P    +    L+  V ++ ++   +  G+     T HT RH
Sbjct: 69  AYRQPAWMFIFPSSTLCNHPYSGKLCRHHLHDSVARKALKAAVQKAGILNKRVTCHTFRH 128

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 129 SFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|257883925|ref|ZP_05663578.1| phage integrase [Enterococcus faecium 1,231,501]
 gi|257819763|gb|EEV46911.1| phage integrase [Enterococcus faecium 1,231,501]
          Length = 381

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 93/247 (37%), Gaps = 27/247 (10%)

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLK----KSNSLPRALNEKQALTLVDNVLLHTSHE 148
           S  K    Y     I   + + N+   K    K     +  +++Q +TL D +    S  
Sbjct: 135 STSKRIFSYAINLGIIETNPLENVLMPKRTTTKHKEKVKVYSKEQLITLFDYL---NSKP 191

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP------- 201
             + +  +  +L  L+  G+RISEAL+L   +I   ++T+ I     + +          
Sbjct: 192 ETYRNDFDKTLLRFLFYSGVRISEALALNWSDIDFQENTVTINKTLSQSKNGYKISDPKT 251

Query: 202 --------LLPSVRKAILEY-YDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQL 250
                   L       + ++  +   + L L I  P  +F GI  + +        +  +
Sbjct: 252 DRSAGVLPLDERTISILKKWQINQRKYMLTLGITDPTMIFCGIYKELITHHAIYARLITI 311

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDW 309
                +P     H  RH+ A+ LL  G  +  +Q+ L H ++S T   Y ++  +     
Sbjct: 312 CEKAMVPF-LGVHVTRHTHASMLLDAGATMVEVQTRLRHTKISQTIDCYGHLAKETKEKT 370

Query: 310 MMEIYDQ 316
           + ++   
Sbjct: 371 VEKLVQH 377


>gi|237716535|ref|ZP_04547016.1| integrase [Bacteroides sp. D1]
 gi|262405314|ref|ZP_06081864.1| integrase [Bacteroides sp. 2_1_22]
 gi|294644635|ref|ZP_06722388.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294810164|ref|ZP_06768832.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229442518|gb|EEO48309.1| integrase [Bacteroides sp. D1]
 gi|262356189|gb|EEZ05279.1| integrase [Bacteroides sp. 2_1_22]
 gi|292640072|gb|EFF58337.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294442628|gb|EFG11427.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 406

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 110/298 (36%), Gaps = 25/298 (8%)

Query: 37  QSYECDT---RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
            SY       +    F+A   +++I ++ + +      +AF+ K +          + + 
Sbjct: 126 SSYRHSMYYQKYLTDFIASIGKKEIPLEEVTEDFGKSYKAFLKKCK--NFSSSQTNKCMC 183

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            +   L     ++I   +   ++    K  +  R ++  +   ++      T    K ++
Sbjct: 184 WLNRLLYLAVDKEIIRVNPCEDLEYEPKPEARHRYISRDEFKKIL-----STPMYDKRME 238

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQN---IMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210
               A ++     GL   +   L P +     + +  +RI  K  K+     L  + + I
Sbjct: 239 LARRAFIFSTL-TGLAYVDIKLLHPHHIGTNAEGRRYIRINRKKTKVEAFIPLHPIAEQI 297

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
           L  Y+        + + P+F        +       I ++   +G   + + H  RHSF 
Sbjct: 298 LSLYNT------TDDEKPVFPLP-----SRDSLWFDIHEMGVAIGKEENLSYHQSRHSFG 346

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328
           T L+S    + SI  ++GH  + TTQ Y  +        M ++ ++       + K+N
Sbjct: 347 TFLISADIPIESIAKMMGHSNIRTTQGYARITDDKISKDMDKLMERRKKISAGEKKEN 404


>gi|222444757|ref|ZP_03607272.1| hypothetical protein METSMIALI_00370 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434322|gb|EEE41487.1| hypothetical protein METSMIALI_00370 [Methanobrevibacter smithii
           DSM 2375]
          Length = 359

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/362 (15%), Positives = 121/362 (33%), Gaps = 70/362 (19%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           I + EL      +L+  +  + L+  T++    +  QF+ +L     E++    +++   
Sbjct: 2   IATKELSGYLDEYLEEKQEIKNLTSETIKKQTFNINQFISYLENEGIEELDSTNVKK-QL 60

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI-------LNMRNLKK 121
              R +    + +     ++K  +  I  F+   + ++      I       + + + + 
Sbjct: 61  RHYRRY--CLKGRGNKRTTVKTYMMNILEFINSEEVQEEIQHDPIKMKDIIEVKVEDPET 118

Query: 122 SNSLPR--ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
           +       +LN +Q+  L++ + L         +AR+ AI       G+R+ E + L   
Sbjct: 119 AKKRIEKISLNSQQSDFLLETIELSG-------NARDYAICSTFLDSGIRLKELVGLNKS 171

Query: 180 NIM--DDQSTLRI-----------------QGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220
           +I    D++   I                      K R   +      ++ +        
Sbjct: 172 DIQVPLDENGFYILPDDVNSYIELHLRAETTKGQSKDRTTFITYDTLASLNDMIYDRITK 231

Query: 221 LNLNIQLP------------------LFRGIRGKPLNPGVFQRYIRQLRRY--------- 253
           L  N                      LF   +GK +     Q  I++  +          
Sbjct: 232 LRKNTYDVYRPVIQRKKAEAEKTREELFLNQKGKRIGKRAVQEVIKKYAKLSDERIANEN 291

Query: 254 ----LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
               +    + + H LRH+  +H       +  +QSI GH    TT  Y +V+ ++    
Sbjct: 292 IDCPVNYGKNVSVHILRHTALSHYAEI-LTVAEVQSIAGHSNSQTTDKYIHVDREHIKQK 350

Query: 310 MM 311
           + 
Sbjct: 351 LK 352


>gi|323153903|gb|EFZ40133.1| phage integrase family protein [Escherichia coli EPECa14]
          Length = 431

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/320 (11%), Positives = 99/320 (30%), Gaps = 53/320 (16%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT-EEKITIQTIRQLSYTEIRAFISK 77
           + +L   E E  ++K +L +Y    +  L  +        I  + +  +    +  +   
Sbjct: 91  EKFLALKETE--VAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLAVRKELLTGYQIP 148

Query: 78  RRTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +             ++   ++ + +  ++        ++    +  LK+S ++P  L+ +
Sbjct: 149 KSNYIVTQPGRSAVTVNNYMTNLYAVFQFGVDNGYLADNPFKGISPLKESRTIPDPLSRE 208

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + + L+D      +            +  +    G+R  E  +L  ++I     T+ I+ 
Sbjct: 209 EFIRLIDACRNQQAKN----------LWCVSVYTGIRPGELCALGWEDIDLKNGTMIIRR 258

Query: 193 KGDKIRIVPLLPSV--------------------------RKAILEYYDLCPFDLNLNIQ 226
              K R                                  ++ I++ +            
Sbjct: 259 NLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMALTRLSKEHIIDVHLREFGRTEKQKC 318

Query: 227 LPLF-------RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
             +F           G        ++      +  G+    +  + RH++A   L+ G +
Sbjct: 319 TFVFQPEVSAKVKNYGDHFTVDSIRQMWDAAVKRAGIRHRKSYQS-RHTYACWSLTAGAN 377

Query: 280 LRSIQSILGHFRLSTT-QIY 298
              I + +GH       Q+Y
Sbjct: 378 PAFIANQMGHADAQMVFQVY 397


>gi|301311432|ref|ZP_07217359.1| integrase [Bacteroides sp. 20_3]
 gi|300830518|gb|EFK61161.1| integrase [Bacteroides sp. 20_3]
          Length = 407

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 61/299 (20%), Positives = 110/299 (36%), Gaps = 32/299 (10%)

Query: 29  RGLSKLTLQSYECDTRQFLI-FLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDR 86
           +   K TL  Y             FY +E I+     +L+   I AF    R  +++   
Sbjct: 121 KEYQKSTLSRYGNCYESLETVIHEFYKKEDIS---FNELNGEFIDAFEMHLRIVRRLSQN 177

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRN--LKKSNSLPRALNEKQALTLVDNVLLH 144
           +L + +S  +  +   +     T   ++  R    +K  + P  L  ++   ++      
Sbjct: 178 TLTKYMSCFRKIIGIARDNGWLTFDPLVGKRKRLFRKEETCPTFLTLEELQRIISKDF-- 235

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQG--------KGD 195
               T+    ++  +L  L   G+   +  +L P +   D++  L I          K  
Sbjct: 236 --STTRLEHVKDFFLLCCL--TGMSYIDVSTLLPIHLYRDNKGQLWIHKSRVKITAAKET 291

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
               VPLL     AIL+ Y     D      LP+    +           Y++++     
Sbjct: 292 CTSNVPLLAPAV-AILDKYRGWNPDNPDGPCLPVPSNQKM--------NEYLKEIATLCR 342

Query: 256 LPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +    T H  RH+F T + L+N   L+++  +LGH     TQ Y  V  KN  + M  +
Sbjct: 343 INKRLTVHVARHTFGTTVTLANNVSLQNVSKMLGHSSTRMTQHYARVLDKNIMEDMQGV 401


>gi|293371862|ref|ZP_06618267.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292633168|gb|EFF51744.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 385

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 104/287 (36%), Gaps = 25/287 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKR 90
           SK ++ +Y    +    F+      ++T     QL+   I  F      +      ++  
Sbjct: 105 SKSSVWTYRKIRKNLAEFIGEKY--RLTDLAFGQLTEPFISDFHHYLLDEKGFSSGTITI 162

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +S  K   +   +R +       + R      + P+AL+    + + D  L     E K
Sbjct: 163 YVSLFKKMCRIAFERGLCKNLLFAHYRVGTPKVTTPKALSMSDFIKIRDVEL----PEDK 218

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKGDKIRIVPLLPSV 206
              + +  +       G    + +S+T  N       D+  +  + K   +  V LLP  
Sbjct: 219 PRLSVSRDLFLFACYAGTAFIDTVSITKANVKVLEDGDKWLVYNRKKTGTLARVKLLPEA 278

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            + + +Y      D   +   PL        LN    +  +  + +      + + H+ R
Sbjct: 279 LELMAKY-----EDGARDTLFPL--------LNTNRVRIDLITICKLAETSKTYSYHSGR 325

Query: 267 HSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           HSFA+ + L  G  + +I  +LGH  +  TQ Y  V  K   + M +
Sbjct: 326 HSFASLITLEAGVPMETICKMLGHKDVKMTQRYARVTQKKLFEDMDK 372


>gi|332884957|gb|EGK05211.1| hypothetical protein HMPREF9456_02975 [Dysgonomonas mossii DSM
           22836]
          Length = 299

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/258 (22%), Positives = 106/258 (41%), Gaps = 22/258 (8%)

Query: 74  FISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           FI  R+T+   G+R+L   +S      +++ ++ +        M +  K    P    ++
Sbjct: 27  FIKWRKTRVNDGERTLYARISVWCQLSRHISRQGVGCYIP--QMPSPTKGTYSPYIYTKE 84

Query: 133 QALTLVD--NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           Q   ++     L    ++   +     A+L LLY  GLRI EAL++  +N+  +   + I
Sbjct: 85  QINLIMQKSMELRINRNDMDCLIFIMPALLRLLYSTGLRIQEALTIKNENVSLEGHYILI 144

Query: 191 -QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI---QLPLFRGIRGKPLNPGVFQRY 246
            + K    RIVP+  S+   + +Y          NI   +  LF    G P       ++
Sbjct: 145 TKTKNRCERIVPICESMEVVLRQYLQYRDRIPIKNIAASKSHLFVKPDGTPCKAVSVGKW 204

Query: 247 IRQLRRYLGLP-----LSTTAHTLRHSFAT----HLLSNGGDLRS----IQSILGHFRLS 293
            R + R   +P          H  RH+ AT     +  +G D+ +    + + LGH  LS
Sbjct: 205 FRMILRSSAIPIFGNRKGPRLHDFRHTMATGSLVQMAHDGIDMYAAMPILSACLGHKSLS 264

Query: 294 TTQIYTNVNSKNGGDWMM 311
            T+ Y  + ++   + + 
Sbjct: 265 ATEQYVRLTAEMHPELLE 282


>gi|332879665|ref|ZP_08447358.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332682382|gb|EGJ55286.1| site-specific recombinase, phage integrase family [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 367

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 102/292 (34%), Gaps = 30/292 (10%)

Query: 18  RQNWLQNLEIE------RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
            + +L+ +E E      R  S  T+Q+     R FL F+    ++ +    I Q+    I
Sbjct: 81  VEMYLKTIEKETKDGVKRDSSLRTIQT---FIRLFLKFINEKYKQAV---FISQIDIRVI 134

Query: 72  RAFISKRRTQKI-GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
             F+     +K     +    L  +++F  +   +   +++    +++ + +      LN
Sbjct: 135 NHFLDDVYLKKNTSVHTYNSYLMRLRAFFNFCISKGFISKNPAEGIKSKRVTEKTRVVLN 194

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           +K+   L            ++ D     +    Y C +R  E L L   ++  ++  + I
Sbjct: 195 DKEKERL---------ARLRYDDFHLYVLCMTTYYCFIRPKELLMLKVGDVNLEKGYITI 245

Query: 191 Q---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
                K  K   V +       +  +      D  L          +   L+      + 
Sbjct: 246 PAEVAKNRKTESVTIPNLFLPDLQAHIGKATADCYLFGWKWQANTKKATRLD-----YHW 300

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
            +++           ++L+ +  T +L+ G     ++    H  L  T++YT
Sbjct: 301 DKIKEKYDFRKEVQFYSLKDTGITDMLNAGVPAIKVRDQARHSDLKITEVYT 352


>gi|198277318|ref|ZP_03209849.1| hypothetical protein BACPLE_03530 [Bacteroides plebeius DSM 17135]
 gi|198269816|gb|EDY94086.1| hypothetical protein BACPLE_03530 [Bacteroides plebeius DSM 17135]
          Length = 388

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/298 (19%), Positives = 110/298 (36%), Gaps = 37/298 (12%)

Query: 14  LLKERQNWLQNLE------IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           LL   + ++++ E       E+G    T QSY         F+      K++      L+
Sbjct: 109 LLGYFRTFIEHFEKRVGVNREKG----TAQSYRYACNCVAAFIQEKY--KLSDVPFTALN 162

Query: 68  YTEIRAFISKRRTQKI-GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
            + I  +    RT++     ++   ++ + + +       I T          +      
Sbjct: 163 RSFIDNYDLYLRTERRFALGTIVLLVTRLNTIVGEAIAEGIITADPFAGYEA-EHPEREQ 221

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQ 185
           + L   +   L+   L    H+ K    R+  +       G+   +   LT ++  + + 
Sbjct: 222 KYLTAVELQRLMTTPL----HDPKLYHIRDLFLFSC--YTGIPYGDMCRLTTEDLEVAED 275

Query: 186 STLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
             + I   + K      VPLL      + +Y D+ P             G      +   
Sbjct: 276 GEVWIKTARKKTKIDYEVPLLDIPLLILDKYRDMAPE------------GKLLPMYSNNE 323

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYT 299
             R ++++    G+      H  RH++AT + LS+G  L ++  +LGH R+STTQIY 
Sbjct: 324 LNRTLKRIAAICGIERKLVFHCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYA 381


>gi|167621189|ref|ZP_02389820.1| Fels-2 prophage protein [Burkholderia thailandensis Bt4]
          Length = 317

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 95/259 (36%), Gaps = 25/259 (9%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNIL 114
           E +        S      + ++R    +   ++ R  + +++    L +    T E+ + 
Sbjct: 57  EAMGNPRAESFSADLFAEYRTRRLEAGVTANNMNREHAYLRAMFNELGRLGHWTKENPLR 116

Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
           ++R  K   S    L  +Q   L+       +   +  +     I  +    G R  EA 
Sbjct: 117 HVRAFKVQESELTYLVPQQIRGLL-------AALAEGRNVHVLLISKVCLATGARWGEAE 169

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234
            L    I   Q    ++ K  K R VP+  ++ + ++ ++          +         
Sbjct: 170 GLRRTQIKGGQIQF-VKTKSSKARSVPITDALERELIAHFGNYGDSDTGRLFEAS----- 223

Query: 235 GKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
                        R+     GL  P     H LRH+FA+H + NGG++ ++Q  LGH  L
Sbjct: 224 ---------SSAFREAVERAGLVLPDGQLTHVLRHTFASHFMMNGGNILALQRALGHHSL 274

Query: 293 STTQIYTNVNSKNGGDWMM 311
           + T  Y +++ ++  +   
Sbjct: 275 TMTMRYAHLSPEHLAEARR 293


>gi|149911868|ref|ZP_01900469.1| Integrase [Moritella sp. PE36]
 gi|149805073|gb|EDM65098.1| Integrase [Moritella sp. PE36]
          Length = 341

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 59/307 (19%), Positives = 111/307 (36%), Gaps = 41/307 (13%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-----LSYTEIRA 73
           + WL +    R LS+L    ++   +        Y   +I  + +        +  +   
Sbjct: 52  KPWLADKTDNRRLSELLDLWWKLHGKNLKSGAHAYRRLQIMCEQLNDPIAATFTAKDFAH 111

Query: 74  FISKRRTQK---------IGDRSLKRSLSGIKSFL-KYLKKRKITTESNILNMRNLKKSN 123
           + + R T           +   S    L  +K    +  + ++    + + +M+ +K + 
Sbjct: 112 YRANRLTVGQGKGRSGAELSISSQNYDLLWMKVLFNELRRLKEWNQPNPLKDMKTIKTAE 171

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
                L   Q   L+      T  +   I  + + I+ +    G RI EA+ L    +  
Sbjct: 172 RELSYLTHDQITQLL------TFVQRSPISGQMTQIIKICLATGARIMEAIELKGAQVTK 225

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
            + T     KG K R VP+   +   I +           N    LF          GV 
Sbjct: 226 HKITFT-NTKGKKNRTVPISEDLYNEIYQ-----------NTSGRLFTCGY------GVL 267

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            +++        LP     H LRH+FA++ + NGG++  +Q ILGH  +  T  Y++   
Sbjct: 268 HKWLNLCF--SDLPKGQATHILRHTFASYFMMNGGNILVLQKILGHADIKQTMAYSHFAP 325

Query: 304 KNGGDWM 310
            +  D +
Sbjct: 326 SHLQDAV 332


>gi|313887048|ref|ZP_07820747.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923459|gb|EFR34269.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 398

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 108/277 (38%), Gaps = 26/277 (9%)

Query: 50  LAFYTEEKITIQTIRQ--LSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRK 106
           +  Y  E++ ++ IR   L Y  I       ++++ +   +++  +  ++  +   +++K
Sbjct: 119 IEAYLRERLGLEDIRYSLLDYGFIEGMDFYLKSERNLSLATIQIVVIFLRKLIGIGQQKK 178

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
                  ++ +  +  +   R L  ++   ++   ++    E          +       
Sbjct: 179 YIRIDPFVDYKA-ELPHRTRRYLTTEELQRVLQTPIIDRQFERA------RQLFLFCAFT 231

Query: 167 GLRISEALSLTPQNIM---DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           GL   +   +  ++I+   D    +RI + K D   I+PLLP  ++ +  Y        +
Sbjct: 232 GLARVDMQRIRLKHIIRNADGTEEIRIKRQKTDVEAIIPLLPIAKQILSFYI------KD 285

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLR 281
             +   +F       L           + +   +    T H  RH+F+T   LSNG  + 
Sbjct: 286 KKVDDLIFPN-----LTTRKASLACVNIGQICRIEKGLTFHMARHTFSTTICLSNGISME 340

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           ++  +LGH  + TTQIY  +      + M  + D+ H
Sbjct: 341 TLSKMLGHSNIGTTQIYGKITDHKIQEDMTALTDREH 377


>gi|161523680|ref|YP_001578692.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189351551|ref|YP_001947179.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
 gi|160341109|gb|ABX14195.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189335573|dbj|BAG44643.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
          Length = 188

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 17/191 (8%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           +   EK+   ++  V L      +    RN A++ L +  G+R+ E  +L   +++D   
Sbjct: 5   KTFTEKELKQVLTYVSL------RRHALRNRAMVLLTHWAGMRVGEVAALLVGDVLDTDG 58

Query: 187 TLRI-------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           +++        Q KG   R V L   +R+ +  Y        N  +  PLF   +     
Sbjct: 59  SIKSEIRLAPEQTKGRHARTVFLGQKLRRELAAYVASLN---NPTLDGPLFYTQKRAGFT 115

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                +Y   L +  G+    ++H+ R SF T+L S G  +R + S+ GH  +STTQ Y 
Sbjct: 116 ANTLCQYFHWLYKEAGIH-GASSHSGRRSFITNLASKGVGVRVLMSLAGHRDISTTQRYI 174

Query: 300 NVNSKNGGDWM 310
           +VN       +
Sbjct: 175 DVNDDMQRKAV 185


>gi|303239113|ref|ZP_07325643.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302593451|gb|EFL63169.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 326

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 60/283 (21%), Positives = 111/283 (39%), Gaps = 25/283 (8%)

Query: 45  QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK 104
           +F +FL  ++ +        +L  + +  +I+KR  +K   ++ +  L+  K F+ YL K
Sbjct: 38  EFDMFLQKHSLQD------AELPKSIVEDWITKRPNEK--RKNQRYRLNFTKRFILYLNK 89

Query: 105 RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-RNSAILYLL 163
              T     L +     S+  P   +  +   L                      +   L
Sbjct: 90  NGFTAYFPNLTITARDDSDFTPYIFSNDEICKLFSYFNNMKPSRQYPNGHLVIPLLFRTL 149

Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
             CGLR+SEA +L  +++   +  L I+  K DK R VPL P +    L++Y+       
Sbjct: 150 ACCGLRVSEATNLKLKDVDFTKGVLLIREAKNDKKRYVPLSPKLTNDFLDFYETIHKC-- 207

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-----TAHTLRHSFATHLLS-- 275
              +   F   R        F    R+   + G+           H LRH+FA   +   
Sbjct: 208 SEQEDYFFPNARKSVYASNHFYNRFREALWHCGIEHKGRGFGPRVHDLRHTFAVRCMQKF 267

Query: 276 --NGGDLRS----IQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
             N  D+      + + LGH+ +S TQ Y ++ +++  + + +
Sbjct: 268 DKNKKDIVLSLPYLSAYLGHYDISKTQKYLHLIAEHYPEIIQK 310


>gi|254774451|ref|ZP_05215967.1| putative transposase [Mycobacterium avium subsp. avium ATCC 25291]
 gi|254777682|ref|ZP_05219198.1| putative transposase [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 635

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 106/279 (37%), Gaps = 28/279 (10%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102
             +F  +LA      I +++I +++   +  +++  R+  IG +     +  +  F   +
Sbjct: 235 LTRFAGYLA-----DIGVESIDRINRPVLERYLANLRSDSIGAQRRGTHIGLLNRFFATV 289

Query: 103 KKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           ++ +  T+     M       K+   LPRAL E+    L D   L      ++ D  +  
Sbjct: 290 RQHRWDTDLPADAMFFAEDYPKRDERLPRALAEQVMTQLEDPDNLA-----RYADPAHRL 344

Query: 159 ILYLLYGCGLRISEALSLT----PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           I  +L  CGLRI++AL L       +         +  K  +  +VP+   +R+ I E+ 
Sbjct: 345 ITIILMRCGLRITDALRLRSDCVVADAEGAPYLRYLNHKMKRDALVPIDEQLRELIAEHR 404

Query: 215 DLCPFDLNLNIQLPLFRGIRGK--------PLNPGVFQRY--IRQLRRYLGLPLSTTAHT 264
           +           +   R  +          P       R+  +  +R   G P+  T H 
Sbjct: 405 NHTSQRWPAGTPVLFPRPTKNIDGTHPIASPTYRMALLRWLSVCDIRDEHGQPVHLTPHQ 464

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            RH+  T L++       ++ IL H     T  Y  ++ 
Sbjct: 465 WRHTLGTRLINRDVPQEVVRRILDHDSAQMTGHYARLHD 503


>gi|191639820|ref|YP_001988986.1| Phage integrase [Lactobacillus casei BL23]
 gi|190714122|emb|CAQ68128.1| Phage integrase [Lactobacillus casei BL23]
 gi|327383931|gb|AEA55407.1| Phage integrase [Lactobacillus casei LC2W]
 gi|327387112|gb|AEA58586.1| Phage integrase [Lactobacillus casei BD-II]
          Length = 289

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 103/278 (37%), Gaps = 34/278 (12%)

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
              + I  ++  +++   + +R  +    + KR  + + S + Y  ++    ++    + 
Sbjct: 10  FGGKRIATITTKDVQK--AVKRWFEFTSANYKRWYNYVSSVMDYAVRQGYMDKNPAKAVV 67

Query: 118 NLKKSN---SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
                +     P     K+ +      +   +H   +I      +  +L   G+R  E L
Sbjct: 68  LPHHDDLAGDKPENFWTKEQMNHFFACIDQANHFDIFI------MFRVLAFTGVRRGELL 121

Query: 175 SLTPQNIMDDQSTLRIQGK----------------GDKIRIVPLLPSVRKAILEYY---D 215
           +LT  ++   ++++++                       R +P+       +  +     
Sbjct: 122 ALTWNDVSFKENSIKVNKTLTQGDKGHQIVQAPKTRAGRRTIPVDGQTMAYLKRWRRIQQ 181

Query: 216 LCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                L +N   P   LF   +    +     + + +L+   GL    T H  RHSF ++
Sbjct: 182 ETFIQLGINTMQPNQLLFTNTKNGYQSLNTPSKRLHKLQDDNGLTPRITIHGFRHSFISN 241

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDW 309
           LL  G  + S+Q ++GH   + T  +Y +V++K   + 
Sbjct: 242 LLIAGVPVTSVQKLVGHTDPTITLGVYAHVSAKQESEA 279


>gi|330998378|ref|ZP_08322202.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329568484|gb|EGG50289.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 394

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 58/293 (19%), Positives = 110/293 (37%), Gaps = 38/293 (12%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITI----QTIRQLSYTE---IRAFISK----RRTQKIG 84
           L+ Y    R+      F  +          T  ++        R ++      RR  +I 
Sbjct: 119 LEYYRKQLRKHDQKWGFVYQHFYNFVHGKCTFEEIDVDLCNKFREYLLNAKQLRRDGQIS 178

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S     S  + FLK L + ++   +    +  ++  +     L+ ++   L +     
Sbjct: 179 RNSASGYWSTFRGFLKILYRNRMIKTNVNDFLEKIEPEDVAKEYLSVEELYCLAET---- 234

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----DQSTLRIQGKGDKIRIV 200
                K    + +++   L    LR+S+ LSL  + I+D     +    I  K     I+
Sbjct: 235 ---PCKIPVLKTASLFSCL--TSLRLSDILSLCWEEIVDFAAGGKCVHTITQKTKTEDII 289

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+     + I                 P  +G+  K L     Q+ +++  R  G+  + 
Sbjct: 290 PISDEALELI--------------GYSPEKKGLVFKGLKRSWTQQPMKEWIRSAGITKNI 335

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           T H+ R ++AT   + G D+R+IQS + H  ++TTQ Y  V   N  +   +I
Sbjct: 336 TFHSYRRTYATLQAAAGTDIRTIQSNMAHKSITTTQRYMKVVDSNKREATTKI 388


>gi|126728048|ref|ZP_01743864.1| probable integrase protein [Sagittula stellata E-37]
 gi|126711013|gb|EBA10063.1| probable integrase protein [Sagittula stellata E-37]
          Length = 384

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 106/272 (38%), Gaps = 24/272 (8%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T + Y  +  +F++         +   T+  ++  ++  F    R          R L  
Sbjct: 117 TAKEYRRNLERFIL-------PALGQLTVTGITRADVAKFHHDLRHIPYQA---NRRLEV 166

Query: 95  IKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           +       +   +  +  +   ++R   +     R L+  +   + + +    +   +  
Sbjct: 167 VSKMFGLAEMWGLRPDGTNPRKHIRKYPEEKRE-RFLSAAELRRIGEVLREMEAEGIELP 225

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
            A  +A   LL   G R++E ++L   ++   +  LR+       ++V L   V   + +
Sbjct: 226 SAILAA--RLLILTGCRLNEIMTLKWAHVDLAERVLRLPDSKSGAKVVHLGQPVVDLLRD 283

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
              +      +   LP      GK L+    Q + +++R   G+      H LRH+FA+ 
Sbjct: 284 AQHIDENPWVITGILP------GKRLSD--LQPFWQRVRARAGV-KDVRIHDLRHTFAST 334

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            +++G  L  I  +LGH ++ TT  Y ++ ++
Sbjct: 335 AVASGQGLPMIGKLLGHTQVQTTARYAHLAAE 366


>gi|94442258|dbj|BAE93628.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 46/91 (50%)

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            E+     F        P    IR   L+    Q+ +++  R  G+      HTLRH FA
Sbjct: 71  REFKWQFLFPSGRLSADPYGGRIRRHHLHESTLQKSVKKAARGCGINKRVGCHTLRHCFA 130

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           THLL    D+R++Q +LGH  +STT IYT+V
Sbjct: 131 THLLEANHDIRTVQELLGHAHVSTTMIYTHV 161


>gi|320326142|gb|EFW82198.1| hypothetical protein PsgB076_03160 [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 485

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/337 (14%), Positives = 115/337 (34%), Gaps = 52/337 (15%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M    LPE+    +L               L   T++ Y   T+ ++ F       + T 
Sbjct: 1   MNTMTLPELTQEYILTH------------DLRPDTVKIYWAATKSYVRFFGDRLASETTH 48

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           + +     +E+         ++I  RS       +++  +Y  +  +      L +  LK
Sbjct: 49  RDMLDWRRSEL---------ERISKRSWNTYSGHLRTVYRYAMEHGLVD----LKVNPLK 95

Query: 121 KSNSLP-----RALNEKQALT-------LVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
           ++  +P     + +N    +        LV       +           A+  + Y  G+
Sbjct: 96  ETRVIPAKRPKKTVNTDAIVRARNWLNILVQEERATGNRTEITPAWFWLAVFEMFYYTGI 155

Query: 169 RISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
           R++  + L   +I   Q  +R++G   K  +  ++P+   +   +    D+         
Sbjct: 156 RLNALICLRYADIDLGQRLIRVRGETEKTHREFMIPIPDGLMPHLKRLMDIAQRVGFDPA 215

Query: 226 QLPLFRGIRGKPLNPG-----VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGD 279
                        +         +   ++L    G+    T H  RH+ A+ ++     +
Sbjct: 216 DQIFNVNRFSGHYSRSQMNSDQVEAMYKKLTAMTGV--RMTPHRFRHTIASEMMRQPERN 273

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +   +++L H  ++TT  Y     +   D M E+ ++
Sbjct: 274 IHITKNLLNHSNIATTMEYI----EPDYDVMREVMNE 306


>gi|317480558|ref|ZP_07939648.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316903287|gb|EFV25151.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 377

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 77/208 (37%), Gaps = 17/208 (8%)

Query: 103 KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
            ++     +    +        + R  ++++ LTL +   L  +   K  +    A L+ 
Sbjct: 180 WQKGYIKNNPWKLLSA---KEKIARPESKREFLTLDEVRKLEDTPYIK--ENIRRAFLFT 234

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
            Y CGLR+ +   L   +I  +     +     K      LP   KA+  +         
Sbjct: 235 CY-CGLRVGDVTDLCWSDISVNGGQHFVSVVMQKNSKPISLPLPAKAL-SWLPERGEPEA 292

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
               LP          +  V  +++R+     GL      H  RH++ T L++ G DL +
Sbjct: 293 SVFSLP----------SHTVLNKHLRKWAELAGLDRHLHFHLSRHTYGTMLITAGVDLYT 342

Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGDWM 310
              ++GH  +  TQ+Y  +  +   + +
Sbjct: 343 ASKMMGHADVRPTQVYAKIVDRKKEEAV 370


>gi|303326864|ref|ZP_07357306.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
 gi|302862852|gb|EFL85784.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
          Length = 448

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/345 (16%), Positives = 115/345 (33%), Gaps = 59/345 (17%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
            L  I   EL +  + W      ER +S  +++       Q L               I 
Sbjct: 111 KLRSITFGELAELYKAW----AKERRVSAGSVE-------QVLDMHILPVLGDRVAAEIT 159

Query: 65  QLSYTEIRAFISKRRTQK----------IGDRSLKRSLSGIKSFLKYLKKRKITTE---- 110
                 +R  ++ +              +  +++   L  ++    +  +     E    
Sbjct: 160 PADVEALRKLVADKHPLTGRNKNTPGACLSPQTVLHVLKTVREVFNFALETPAPHEPGVM 219

Query: 111 -----SNIL------NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
                +  +       +   K      R LN+K+  TL+         +  + D  +  +
Sbjct: 220 LFSGMNPAIISRRGRGIHVPKNDARRLRILNDKEITTLLAY---RGRRKEAFADLHD--M 274

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG--------KGDKIRIVPLLPSVRKAIL 211
           + L    G R  E + +  ++       +RI          KG   R++       +A  
Sbjct: 275 ILLSLDIGPRAGELVHIRRESCDPVTGAVRIYKGSRDNDTTKGGASRLLFAGQLFPEA-- 332

Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-------TAHT 264
            +  L            LF G  GK  +     R +R++   L               HT
Sbjct: 333 -WEMLRSRLSQPGNGPYLFPGPGGKARDSNGLNRAMRRIMEKLKFNEGVDDPRNTVVWHT 391

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           LRH++AT +L  G D+ +++ ++GH  ++TT+IY ++  +   + 
Sbjct: 392 LRHTYATKMLEAGTDIYTLKELMGHASVTTTEIYLHLCDRAKREQ 436


>gi|226325881|ref|ZP_03801399.1| hypothetical protein COPCOM_03694 [Coprococcus comes ATCC 27758]
 gi|225206005|gb|EEG88359.1| hypothetical protein COPCOM_03694 [Coprococcus comes ATCC 27758]
          Length = 576

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/291 (17%), Positives = 109/291 (37%), Gaps = 17/291 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q + + L    G+S L+L +          FL +   +    + + +L   +I  ++S 
Sbjct: 275 LQLYAKYLV---GISDLSLSNIRNTISFISQFLKYLDGQS---KKVTELEIQDIEGYVSV 328

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
                I   +  R ++ + +FL++LK + I        +        L +   E    ++
Sbjct: 329 LDKSDIKYSTFNRYITHMHTFLQFLKMKNI-------EVLKFYPERFLKKGFTEHNERSV 381

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
            +  + H   E          +  +L+  G+R SE  ++         +   ++    K+
Sbjct: 382 PEKTIAHLIKELPAFPEHLQLMYLILFCTGIRKSEVCTIKSGAFYSQGNENWMRIYQSKM 441

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R   ++P V   ++   +       +     LF+  +G   N   F   + +  +  G+ 
Sbjct: 442 RREKVIP-VPSLLVGLVNDYEKKYGIKNGEYLFKNKKGGAFNGQTFSNQMIRECKVRGIA 500

Query: 258 LS---TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
                  AH  RH+ AT +  NG  ++ ++  LGH   + T+ Y +   + 
Sbjct: 501 CGDYIFRAHDYRHNLATSMYGNGVSIQGVRDYLGHSSENMTKQYIDFMPER 551


>gi|94442262|dbj|BAE93630.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 52/110 (47%)

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G G       L      A   +     F        P    +R   +     Q+ +++  
Sbjct: 52  GHGRVWLPYALAEKYPNADRSFEWQYVFPATKLSVDPRSGAVRRHHIGESSMQKAVKRAL 111

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              G+  + + H+LRHSFATHL+ +G D+R++Q +LGH  +STT IYT+V
Sbjct: 112 ATAGIEKNASCHSLRHSFATHLIESGTDIRTVQELLGHKDVSTTMIYTHV 161


>gi|94442264|dbj|BAE93631.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 52/110 (47%)

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G G       L      A   +     F        P    +R   +     Q+ +++  
Sbjct: 52  GHGRVWLPYALAEKYPNADRSFEWQYVFPATKLSVDPRSGAVRRHHIGESSMQKAVKRAL 111

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              G+  + + H+LRHSFATHL+ +G D+R++Q +LGH  +STT IYT+V
Sbjct: 112 ATAGIEKNASCHSLRHSFATHLIESGTDIRTVQELLGHKDVSTTMIYTHV 161


>gi|69245161|ref|ZP_00603285.1| Phage integrase [Enterococcus faecium DO]
 gi|257879619|ref|ZP_05659272.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257890286|ref|ZP_05669939.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|293560121|ref|ZP_06676625.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1162]
 gi|314938185|ref|ZP_07845490.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
 gi|314943771|ref|ZP_07850506.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|314951140|ref|ZP_07854198.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|314994622|ref|ZP_07859882.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|314995568|ref|ZP_07860662.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|68196004|gb|EAN10437.1| Phage integrase [Enterococcus faecium DO]
 gi|257813847|gb|EEV42605.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257826646|gb|EEV53272.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|291605988|gb|EFF35418.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1162]
 gi|313590156|gb|EFR69001.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313591027|gb|EFR69872.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|313596619|gb|EFR75464.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|313597495|gb|EFR76340.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|313642532|gb|EFS07112.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
          Length = 381

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 93/247 (37%), Gaps = 27/247 (10%)

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLK----KSNSLPRALNEKQALTLVDNVLLHTSHE 148
           S  K    Y     I   + + N+   K    K     +  +++Q +TL D +    S  
Sbjct: 135 STSKRIFSYAINLGIIETNPLDNVLMPKRTTTKHKEKVKVYSKEQLITLFDYL---NSKP 191

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP------- 201
             + +  +  +L  L+  G+RISEAL+L   +I   ++T+ I     + +          
Sbjct: 192 ETYRNDFDKTLLRFLFYSGVRISEALALNWSDIDFQENTVTINKTLSQSKNGYKISDPKT 251

Query: 202 --------LLPSVRKAILEY-YDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQL 250
                   L       + ++  +   + L L +  P  +F GI  + +        +  +
Sbjct: 252 DCSAGVLPLDERTISILKKWQINQRKYMLTLGVTDPTMIFCGIYKELITHHAIYARLITI 311

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDW 309
                +P     H  RH+ A+ LL  G  +  +Q+ L H ++S T   Y ++  +     
Sbjct: 312 CEKAMVPF-LGVHVARHTHASMLLDAGATMVEVQTRLRHTKISQTIDCYGHLAKETKEKT 370

Query: 310 MMEIYDQ 316
           + ++   
Sbjct: 371 VEKLVQH 377


>gi|259419438|ref|ZP_05743354.1| putative transposase B [Silicibacter sp. TrichCH4B]
 gi|259344679|gb|EEW56566.1| putative transposase B [Silicibacter sp. TrichCH4B]
          Length = 695

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 73/321 (22%), Positives = 126/321 (39%), Gaps = 42/321 (13%)

Query: 23  QNLEIER-GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81
           + LEI+R  LS++T+       R+F+ FL  +  +   I+    ++   + AF+   R+Q
Sbjct: 252 RWLEIKRTSLSRVTVDHCAVSLRRFVDFLVRHDPK---IEKFANVTSEVMTAFLIDLRSQ 308

Query: 82  KIGDRSLKRSLS---------GIKSFLKYLKKRKITTES--NILNMRN-LKKSNSLPRAL 129
            +G R+ KR+LS          +  FL      +        +LN R+  +    LPR +
Sbjct: 309 -VGART-KRTLSITAQRSRALHVAQFLSEGAAWEWPDFPTRPVLNTRDLPRLPQRLPRYI 366

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQS 186
             +Q   L++ V        K       A +      G R +E   L    +    D   
Sbjct: 367 PAEQLGPLMEEV-------RKLPCDFQRAAILTARWSGARRTEIARLPVDCLDAYPDGTP 419

Query: 187 TLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLC-------PFDLNLNIQLPLFRGIRGKPL 238
            LRI  GK  + R+VPL P   + + +  +L          D      + L    RG  +
Sbjct: 420 RLRIPAGKTYRERLVPLHPEAAETLRKVIELRAKSDERPVPDARTGQYVKLLFYRRGVAI 479

Query: 239 NPGVFQRY-IRQLRRYLGLPLS-----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +P     Y ++ +   LGL         +AH  RH+  T L   G  +++I  +LGH   
Sbjct: 480 SPDYLFNYPLKDISHRLGLIDGKGQNLISAHRFRHTVGTELAEGGARMQTIMDVLGHQSP 539

Query: 293 STTQIYTNVNSKNGGDWMMEI 313
             + +Y  V+ +        +
Sbjct: 540 HMSMVYIRVSDEAVLADYQAV 560


>gi|223369806|gb|ACM88772.1| integrase [uncultured bacterium]
          Length = 161

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/161 (24%), Positives = 62/161 (38%), Gaps = 37/161 (22%)

Query: 177 TPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY--------------------- 214
             +++  D   + +  GKG K R   L   +  AI +                       
Sbjct: 1   RVKDVDFDNGCITVHDGKGGKSRNSLLPTGLIAAIKQLIDRVLVIQQEDNAQGVGPSLPF 60

Query: 215 --------------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLS 259
                          +  F  +     P    +    L+  V ++ ++   +  G+    
Sbjct: 61  ALDRKYPSAYRQPAWMFIFPSSTLCNHPYSGKLCRHHLHDSVARKALKAAVQKAGILNKR 120

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTH 161


>gi|170023131|ref|YP_001719636.1| integrase family protein [Yersinia pseudotuberculosis YPIII]
 gi|169749665|gb|ACA67183.1| integrase family protein [Yersinia pseudotuberculosis YPIII]
          Length = 313

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 82/234 (35%), Gaps = 30/234 (12%)

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQ 133
           + +R  +     ++    S + +  + L +  +    + +  +R    S      L+  Q
Sbjct: 85  LDERFVKGSSPVTINLDHSYLSAMFEELIRLEEWKLPNPLEKLRKFTISEREMAWLDIDQ 144

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
              L+     H              ++ +    G R SE+  LT   +  ++ T   + K
Sbjct: 145 INELLAATSHHIDMNR---------VIRVCLCTGARWSESQFLTKNQLSPNKITFT-KTK 194

Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           G K R VP+     + + E                LF       L        +      
Sbjct: 195 GKKNRTVPISADFYEELKEIKSER-----------LFGDCYYPFLTILNNSSIV------ 237

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
             LP     H LRHSFA H + NGG++  +Q ILGH  ++ T  Y +   ++  
Sbjct: 238 --LPKGQLTHVLRHSFAAHFMMNGGNILVLQKILGHHDINMTMRYAHFAPEHLD 289


>gi|13475045|ref|NP_106608.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025795|dbj|BAB52394.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 358

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 100/246 (40%), Gaps = 17/246 (6%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
           RGL+  T+  +     +FL   A  +      Q +  L+   +  FI    ++++  ++L
Sbjct: 122 RGLAPATIGQHLGTIEEFLSLSAGPS------QDLSALTSEHVENFIHTL-SRRVLRQTL 174

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALTLVDNVLLHTS 146
           +  ++ +++FL++   R       +  +   +  +    PRAL+ +    L     L + 
Sbjct: 175 QHKVAHLRAFLRFCADRGKAARG-LERIDTPRTYRGELPPRALDWEVIEKL-----LSSV 228

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205
             T ++  R+ AIL+L+   GLR SE  +LT   +   + TLR+ Q K     ++PL   
Sbjct: 229 ARTDYLGRRDHAILHLMAYYGLRPSEIAALTLDAVNWKRRTLRVEQRKTRSTLVLPLADQ 288

Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHT 264
             + +  Y         +   L          L          +  R  GLP    +++ 
Sbjct: 289 TLEILDRYIADGRPCDLVTNFLFAKVRSPVGALTSWGICDIFSKRARQSGLPLDGVSSYA 348

Query: 265 LRHSFA 270
           LRHSF 
Sbjct: 349 LRHSFL 354


>gi|265750916|ref|ZP_06086979.1| transposase [Bacteroides sp. 3_1_33FAA]
 gi|263237812|gb|EEZ23262.1| transposase [Bacteroides sp. 3_1_33FAA]
          Length = 410

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/286 (18%), Positives = 107/286 (37%), Gaps = 33/286 (11%)

Query: 35  TLQSYE---CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           T + Y+      R+FL     Y  E I ++ +      +   F+  R  +K    ++   
Sbjct: 132 TFRRYQTVCSHIREFLPH--TYKREDIPLKELNLTFINDFEYFL--RTKKKCRTNTVWGY 187

Query: 92  LSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           +  +K  +   +       +     + + +  N     L +K+  TL+D ++ +T HE  
Sbjct: 188 MIVLKHIVSIARNDGRLPFNPFAGYINSPESVNR--GYLTQKEIQTLMDALMKNTYHELV 245

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKGDKIRIVPLLPSV 206
                   +       GL  S+  +LT          +   +  + K +    + LL   
Sbjct: 246 ------RDLFVFSVFTGLAYSDVKNLTADRLQTFFDGNLWIITRRKKTNTESNIRLLDVP 299

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
           ++ I +Y         L     +F        + G + + ++++ +  G  +  T H  R
Sbjct: 300 KRIIEKYR-------GLTKDGCVFPVP-----SNGSYNKILKEIGKQCGFKVRLTYHVAR 347

Query: 267 HS-FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           H+   T LLS+G  + ++  +LGH  + TT IY  +  +     M 
Sbjct: 348 HTNATTVLLSHGVPIETVSRLLGHTNIKTTPIYAKITVQKISQDME 393


>gi|160876042|ref|YP_001555358.1| integrase family protein [Shewanella baltica OS195]
 gi|160861564|gb|ABX50098.1| integrase family protein [Shewanella baltica OS195]
          Length = 318

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 93/248 (37%), Gaps = 38/248 (15%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSN 123
           Q++      + + RR +KI  ++    L+ ++     L        E  + +   +K   
Sbjct: 99  QVNTNFYLNYRA-RRLEKITPKTANLELTRLQGVYSVLIAAGEFAGEHPLKSAPPIKLQA 157

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
                L + Q   L+             +      I+ +    G R SEA +LT   ++D
Sbjct: 158 KDQSFLTKPQIAQLL-----------ALLSGEMLLIVKICLSTGARWSEAQNLTSSQLLD 206

Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
           D+    I  K  K R +P+    R  +             N    LF     + L     
Sbjct: 207 DRINF-INTKNGKNRTIPITREFRAEL------------PNGNGRLFTDCYHQFL----- 248

Query: 244 QRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
                 + +  G+  P    +H LRH+FA+H + NGG++ ++Q ILGH  +  T  Y ++
Sbjct: 249 -----AVLKSSGIELPKGQASHVLRHTFASHFVMNGGNILTLQKILGHGSIQMTMRYAHL 303

Query: 302 NSKNGGDW 309
              +  + 
Sbjct: 304 APDHLQEA 311


>gi|290959113|ref|YP_003490295.1| prophage integrase [Streptomyces scabiei 87.22]
 gi|260648639|emb|CBG71751.1| putative prophage integrase [Streptomyces scabiei 87.22]
          Length = 380

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/287 (18%), Positives = 104/287 (36%), Gaps = 40/287 (13%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            L   T  SY       +  L   T     +  +R ++ TE   +++   T+ +    ++
Sbjct: 86  QLKHKTQASYRS----LINSLINPTLGDRELSGLRPITVTE---WVASMNTRGLSASRIR 138

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           ++   +   ++      +  ++    ++  +   + P  L   +A  +V +      H+ 
Sbjct: 139 QAYRVLSQIMRAAVDNDMIPQTPCRGVKLPRMPQTEPHILTPLEASRIVRS--AAKPHD- 195

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--------------QGKGD 195
                    ++ LL   GLR+ EA +L   +I      + +                K  
Sbjct: 196 --------VLIALLAYAGLRVGEAFALRRVDIDVSGGFVLVDENLAEANGALVFDTPKSH 247

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-YIRQLRRYL 254
           + R++ + P++ K +  + +     L+      LF    GKPL    +++ Y        
Sbjct: 248 QKRLLRVGPALAKRLGRHLET----LSGGDDALLFTTPGGKPLRYNQWRKAYFDPAVSAA 303

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTN 300
           GL    T H LR S  T +    G + +    LGH   S TT+ Y  
Sbjct: 304 GLT-DVTPHDLRASHGTWVADRYG-VMTAAHRLGHSNASVTTRHYAR 348


>gi|254883530|ref|ZP_05256240.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|254836323|gb|EET16632.1| integrase [Bacteroides sp. 4_3_47FAA]
          Length = 371

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/293 (19%), Positives = 110/293 (37%), Gaps = 38/293 (12%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITI----QTIRQLSYTE---IRAFISK----RRTQKIG 84
           L+ Y    R+      F  +          T  ++        R ++      RR  +I 
Sbjct: 96  LEYYRKQLRKHDQKWGFVYQHFYNFVHGKCTFEEIDVDLCNKFREYLLNAKQLRRDGQIS 155

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S     S  + FLK L + ++   +    +  ++  +     L+ ++   L +     
Sbjct: 156 KNSASGYWSTFRGFLKILYRNRMIKTNVNDFLEKIEPEDVAKEYLSVEELYCLAET---- 211

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----DQSTLRIQGKGDKIRIV 200
                K    + +++   L    LR+S+ LSL  + I+D     +    I  K     I+
Sbjct: 212 ---PCKIPVLKTASLFSCL--TSLRLSDILSLCWEEIVDFAAGGKCVHTITQKTKTEDII 266

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+     + I                 P  +G+  K L     Q+ +++  R  G+  + 
Sbjct: 267 PISDEALELI--------------GYSPEKKGLVFKGLKRSWTQQPMKEWIRSAGITKNI 312

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           T H+ R ++AT   + G D+R+IQS + H  ++TTQ Y  V   N  +   +I
Sbjct: 313 TFHSYRRTYATLQAAAGTDIRTIQSNMAHKSITTTQRYMKVVDSNKREATTKI 365


>gi|149916532|ref|ZP_01905048.1| Site-specific recombinase XerD-like protein [Roseobacter sp.
           AzwK-3b]
 gi|149809571|gb|EDM69428.1| Site-specific recombinase XerD-like protein [Roseobacter sp.
           AzwK-3b]
          Length = 316

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 88/274 (32%), Gaps = 13/274 (4%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
           +            +   ++    + +L+   +  ++ ++    +   ++ + +  +   L
Sbjct: 40  KRHFHHDWSIFNTHVRAQLGHYHLDELTNPVLDVWVREQVVSGLQRSTINKHIYLMNRML 99

Query: 100 KYLKKRKITTESNILN--MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
              +   +    N     ++ L   +   R L+  +   L+      +            
Sbjct: 100 NLARHWCLVPAQNPDQQPLKRLVVGDYKQRFLSADEIQRLIAACRRSS-------HPYLH 152

Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL 216
             + +L   G R  EA +   +++  D+    + + K  + R + L  +   +       
Sbjct: 153 HFVQILLLTGARKGEARTALWRDVDLDKRIWTVPRSKNGRSRRILLNTNAVDSFNAIRRT 212

Query: 217 CPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
                        +F   R        F       R    L      H LRH+FA+ L++
Sbjct: 213 AERLQQPTLPTSFVFTNPRTGRA-YDSFYAAWYVARDQAKLE-DVRIHDLRHTFASLLIN 270

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
            G  L  +Q++LGH  +  TQ Y ++        
Sbjct: 271 KGVSLYEVQTLLGHSSVQMTQRYAHLAPDRLHSR 304


>gi|89147669|gb|ABD62693.1| integrase [uncultured bacterium]
          Length = 163

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/110 (32%), Positives = 51/110 (46%)

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G G       L      A  E+     F        P    +R   ++    QR +R   
Sbjct: 53  GYGSVYLPYALSRKYPHADREWGWQYVFPAQKLSTDPRSGVVRRHHVDEQALQRAVRSAV 112

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R  G+    + HT RHSFATHL+ +G D+R++Q +LGH  + TT IYT+V
Sbjct: 113 RVAGIKRPGSCHTFRHSFATHLIEDGYDIRTVQELLGHKDVKTTMIYTHV 162


>gi|89147412|gb|ABD62566.1| integrase [uncultured bacterium]
          Length = 163

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/93 (38%), Positives = 47/93 (50%)

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           A  E+     F  +     P     R   +     Q  +++  R  G     T HTLRHS
Sbjct: 70  AAREWLWQYVFPSSRISIDPRTGAKRRHHIEESSLQMAMKRAVRAWGGAKPATCHTLRHS 129

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           FATHLL NG D+R++Q +LGH  L TT IYT+V
Sbjct: 130 FATHLLENGYDIRTVQELLGHADLQTTMIYTHV 162


>gi|119385813|ref|YP_916868.1| phage integrase family protein [Paracoccus denitrificans PD1222]
 gi|119376408|gb|ABL71172.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 384

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 105/268 (39%), Gaps = 24/268 (8%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSF 98
           Y  + R+F++         +   T+  ++  ++  F    R          R L  +   
Sbjct: 121 YRRNLRRFIL-------PALGQLTVTGITRADVAKFHHDLRHIPYQA---NRCLEVVSKM 170

Query: 99  LKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156
             Y +   +  +  +   ++R   +     R L+  +   + + +    +   +   A  
Sbjct: 171 FGYAEMWGLRPDGTNPRKHIRKYPEEKRE-RFLSAAELRRIGEVLREMETEGIELTSAIL 229

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216
           +A   LL   G R++E ++L   ++  +   LR+       +IV L   V + + +   +
Sbjct: 230 AA--RLLILTGCRLNEIMTLQWDHVDLEGRALRLPDSKTGAKIVHLGQPVVELLRDAPRI 287

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276
                 +   LP      GK L+    Q + +++R   G+      H LRH+FA+  ++ 
Sbjct: 288 KGNPWVIPGTLP------GKRLSD--LQPFWQRVRARAGV-KDVRIHDLRHTFASTAVAA 338

Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           G  L  I  +LGH +  TT  Y ++ ++
Sbjct: 339 GQGLPMIGKLLGHTQAQTTARYAHLAAE 366


>gi|325679665|ref|ZP_08159240.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324108695|gb|EGC02936.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 362

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 90/243 (37%), Gaps = 23/243 (9%)

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           L   +I AFI ++  + +  R L   +   KS  +Y   R+    + +  +   KK+   
Sbjct: 106 LKAKDIYAFIERKLKEGLSVRYLSDIMVLFKSVFRY-ASREYRIRNVLDGIVLPKKNKPE 164

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
              +N++Q L L   +    S  +  I              GLRI E  +L  ++I  ++
Sbjct: 165 IAVMNKEQQLRLEKYLDKRPSVTSMGISISMYM--------GLRIGEVCALQWKDIDLEK 216

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILE-------------YYDLCPFDLNLNIQLPLFRG 232
            TL +     +++        +  I E                L       +        
Sbjct: 217 RTLTVSKTIQRVQCRTGARHTKLIITEPKSESSKRTIPIPDCLLPMLRQFKDNGEVYVVS 276

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
            R KP+ P   Q    ++     LP S   H+ RH FAT  +  G D++++  ILGH  +
Sbjct: 277 GRKKPVEPRTMQYRFAKILHNANLP-SFHYHSTRHLFATRCVELGFDVKTLSEILGHSSV 335

Query: 293 STT 295
             T
Sbjct: 336 EVT 338


>gi|262369098|ref|ZP_06062427.1| phage integrase [Acinetobacter johnsonii SH046]
 gi|262316776|gb|EEY97814.1| phage integrase [Acinetobacter johnsonii SH046]
          Length = 386

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/266 (17%), Positives = 92/266 (34%), Gaps = 18/266 (6%)

Query: 46  FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR 105
           +L  L F+      +  I  +S   I+  I  R  +    ++L   L  ++       + 
Sbjct: 111 YLNILEFHWMGYFALMPINSISIENIKEAIIDRDFK--TAKTLNNCLIPLRGVFDCAMEN 168

Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
           K  TE+ + ++RN K    +P   +  +   +++N L  T    + +         L + 
Sbjct: 169 KFITENPLDSIRNKKVQVDIPDPFSRPEMDAILEN-LKTTLKGDEILYYWYY---ELAFW 224

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQG-----------KGDKIRIVPLLPSVRKAILEYY 214
            G R SE ++L   +        ++             K    R V L    +KA  E  
Sbjct: 225 TGCRPSELIALKESDFDFFSGMFKVNKSRVRGVEKNVTKTHTAREVCLNARSKKAAQELI 284

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                    +  L L         N    +  +    +  G+     A+  RH++AT +L
Sbjct: 285 KYKKDRNIQSKYLMLCPETGEPFFNEKPPRNRLVAALKACGI-RHRPAYNARHTYATMML 343

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTN 300
            +G +   + + +GH      + Y  
Sbjct: 344 MDGLNPVFVSNQMGHSLQMMMKRYAK 369


>gi|222151150|ref|YP_002560304.1| integrase [Macrococcus caseolyticus JCSC5402]
 gi|222120273|dbj|BAH17608.1| integrase [Macrococcus caseolyticus JCSC5402]
          Length = 374

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/337 (16%), Positives = 126/337 (37%), Gaps = 48/337 (14%)

Query: 5   NLPEIVSFE----LLKERQNWLQNLEIERGLSKLTLQS--YECDTRQFLIFLAFYTEEKI 58
           NL EI+  +    L +  + +++   I    S  T+ S  Y  D            ++  
Sbjct: 48  NLKEIIKTDHNIILTEYVKEYIEKFIIP-SYSASTIDSNYYALD----------KIKDYF 96

Query: 59  TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
             + ++ +++++ + FI           ++K+    +   +    +  +  ++    +  
Sbjct: 97  DTKLLKNVTFSDYQLFIDTLIKHPYSTSTIKKCHGLMSKAMITAYRDGLIKQNFTEYVEM 156

Query: 119 LKKSNSLPR---ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175
             K  ++P+    L  +   + +++V   ++ +          +  L+   GLR+ EA +
Sbjct: 157 KYKEVNMPKEKKYLPLEDIKSFLEHVRNRSTIQ--------YYLFRLIIETGLRVGEACA 208

Query: 176 LTPQNIMDDQSTLRIQG------------KGDKIRIVPLLPSVRKAILEYYDL------C 217
           LT ++I  + +TL +              K    RIV +  S+ K I     +       
Sbjct: 209 LTYEDIDTENNTLNVTKSYDQKRKVLGPTKTGNNRIVHITQSLAKEINNLIQIQNAFKVV 268

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-GLPLSTTAHTLRHSFATHLLSN 276
              +  N    +F    G P+        +  +   + G     + H LRH+ A+ L   
Sbjct: 269 NEKVYNNKHNFIFVDELGNPIPRSTIHNTMVHITERMYGEGNHLSIHELRHTHASLLFQA 328

Query: 277 GGDLRSIQSILGHFRLSTTQI-YTNVNSKNGGDWMME 312
              L++I S LGH   + T+  YT++  K     + +
Sbjct: 329 DVPLKAISSRLGHKDTNVTERVYTHLTDKYHEQALHD 365


>gi|167761899|ref|ZP_02434026.1| hypothetical protein BACSTE_00242 [Bacteroides stercoris ATCC
           43183]
 gi|167700269|gb|EDS16848.1| hypothetical protein BACSTE_00242 [Bacteroides stercoris ATCC
           43183]
          Length = 333

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 86/251 (34%), Gaps = 32/251 (12%)

Query: 71  IRAFISKRRTQKIGDRSLKR-----SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
            R ++   +  K  +R +         S  +  LK   + K   E+    +  ++  +  
Sbjct: 104 FREYLLNAKQLKHSNRPISLNSASGYYSTFRGLLKIAYRDKWFCENINDYLDKIEPQDVK 163

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--- 182
              L   +   L           T        A        GLRIS+ L+L  ++     
Sbjct: 164 KEYLTLNEVKQL---------AATPCDIPVLKAASLFACLTGLRISDILNLQWEDFTIAP 214

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           D    LRI+ +  +           +A L                 +F+      L   +
Sbjct: 215 DQGYCLRIRTQKTQT----------EATLPISYEAYELCGTPGTGKVFKD-----LKRSM 259

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               ++   +  G+    T H  RHS+A   +S G D+ ++  +L H  +STTQIY ++ 
Sbjct: 260 INYPLKSWLKKAGITKPITFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLV 319

Query: 303 SKNGGDWMMEI 313
           +    +   +I
Sbjct: 320 NSKKRETANKI 330


>gi|56475687|ref|YP_157276.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|56311730|emb|CAI06375.1| phage-related integrase [Aromatoleum aromaticum EbN1]
          Length = 325

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/253 (21%), Positives = 95/253 (37%), Gaps = 20/253 (7%)

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           L+   +  +  +         +  R L  ++SF ++L++ +  TE     +         
Sbjct: 48  LTVEVMADWARRDSHASTDPSTWARRLKCLRSFTRWLQQFEPRTEVPDDAIFGRLPQRQA 107

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P   +E + + L+       +            +  LL   GLR+SEA++L+  ++    
Sbjct: 108 PHIYSEGEIVALLAAARRLGAAPG-LRGLVYETLFGLLASTGLRVSEAVALSDTDVDLKY 166

Query: 186 STLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFR----GIRGKPLN 239
             L I + K  K R VP+ PS  +A+  Y  +    +       P F       RG PL 
Sbjct: 167 GMLTIVRTKFAKSRYVPMHPSTVEALRRYRWMRDLVIESARADAPFFVVTRGQRRGSPLT 226

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHT-----LRHSFATH----LLSNGGDLR----SIQSI 286
               +R    LR+ L      T H      LRH+F         + G D+     S+ + 
Sbjct: 227 RNEVERVFAGLRKQLAWNNRGTHHAPRIHDLRHTFVVRRIVQWQAQGVDIDQAMLSLSTY 286

Query: 287 LGHFRLSTTQIYT 299
           +GH  ++ T  Y 
Sbjct: 287 VGHAMVTNTYWYL 299


>gi|298674305|ref|YP_003726055.1| integrase family protein [Methanohalobium evestigatum Z-7303]
 gi|298287293|gb|ADI73259.1| integrase family protein [Methanohalobium evestigatum Z-7303]
          Length = 191

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 65/156 (41%)

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
           + L+Y   LR+SEAL++  +++  +   + I G   K            ++L+       
Sbjct: 30  ILLMYTPALRVSEALNVRVRDLDFENECIEIYGGKGKDDTEMQKAPCNISVLKRLKRYAE 89

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
             +L  +  +    + K  +       + +L    G+      HTLR S A HLL  G  
Sbjct: 90  HSDLRPKEYIMFSQKKKKASRFHVYNVLNKLCSQAGIDKKIGTHTLRRSRAEHLLDRGLS 149

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           L  +   L H  L+TT  Y +V++ +    M +I D
Sbjct: 150 LTYVSRFLRHKNLATTMAYLDVSTTDIQREMSKIDD 185


>gi|255015532|ref|ZP_05287658.1| putative bacteriophage integrase [Bacteroides sp. 2_1_7]
          Length = 371

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 64/313 (20%), Positives = 122/313 (38%), Gaps = 44/313 (14%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQS---YECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
           F+  K + ++L+     + L K   +    Y+     F  F+      K T + I     
Sbjct: 86  FDKRKYKADFLEYHR--KQLRKHDQKWGFVYQH----FYNFV----HGKCTFEEIDVDQC 135

Query: 69  TEIRAFISK----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
            + R ++      RR  +I   S     S  + FLK L + ++   +    +  ++  + 
Sbjct: 136 NKFREYLLSAKQLRRDGQISKNSASGYWSTFRGFLKILYRNRMIKTNVNDFLEKIEPEDV 195

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD- 183
               L+ ++   L +          K    + +++   L    LR+S+ LSL  + I+D 
Sbjct: 196 AKEYLSVEELYCLAET-------PCKIPVLKTASLFSCL--TSLRLSDILSLCWEEIVDF 246

Query: 184 ---DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
               +    I  K     I+P+     + I                 P  +G+  K L  
Sbjct: 247 AAGGKCVHTITQKTKTEDIIPISDEALELIGYC--------------PEKKGLVFKGLKR 292

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              Q+ +++  R  G+  + T H+ R ++AT   + G D+R+IQS + H  ++TTQ Y  
Sbjct: 293 SWTQQPMKEWIRSAGITKNITFHSYRRTYATLQAAAGTDIRTIQSNMAHKSITTTQRYMK 352

Query: 301 VNSKNGGDWMMEI 313
           V   N  +   +I
Sbjct: 353 VVDSNKREATTKI 365


>gi|87162325|ref|YP_494623.1| integrase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|161510228|ref|YP_001575887.1| bacteriophage integrase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|87128299|gb|ABD22813.1| integrase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|160369037|gb|ABX30008.1| bacteriophage integrase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|315196780|gb|EFU27125.1| bacteriophage integrase [Staphylococcus aureus subsp. aureus CGS01]
          Length = 345

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 111/278 (39%), Gaps = 18/278 (6%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           + T + Y    +          + KI    + +++    + FI+    +   + +++++ 
Sbjct: 74  ENTYRHYRNALQH-------IQKHKIGKMELSKINRQVYQKFINDYSKEHAKE-TIRKTN 125

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             I+S L       +  ++    + N K         +E++    V    +   H  K  
Sbjct: 126 GAIRSALDDALYDGLIFKNPAYKV-NYKAGKP---TKSEQEKFISVTEYEILKDHVRKKR 181

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
              + A+  ++   G R+S A ++  ++I   ++T+ I  +        +  S+ K+ ++
Sbjct: 182 TRSSLALF-IMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYI--SIAKSDMK 238

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +         ++    +F+      +N       ++   R   + +  T+H LRH+  ++
Sbjct: 239 HIMDVISTFAISYDGYIFKEAGSI-INLHAINNALKSACRVNNISI-ITSHALRHTHCSY 296

Query: 273 LLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDW 309
           LL+ G  +  I   LGH  ++ TT +Y+++  +   + 
Sbjct: 297 LLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEE 334


>gi|9910723|sp|P76168|INTQ_ECOLI RecName: Full=Putative lambdoid prophage Qin defective integrase
          Length = 385

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/320 (12%), Positives = 100/320 (31%), Gaps = 53/320 (16%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT-EEKITIQTIRQLSYTEIRAFISK 77
           + +L   E E  ++K +L +Y    +  L  +        I  + + ++    +  +   
Sbjct: 45  EKFLALKETE--VAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLTGYQIP 102

Query: 78  RRTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +             ++   ++ + +  ++        ++    +  LK+S ++P  L+ +
Sbjct: 103 KSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPDPLSRE 162

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + + L+D      +            +  +    G+R  E  +L  ++I     T+ I+ 
Sbjct: 163 EFIRLIDACRNQQAKN----------LWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRR 212

Query: 193 KGDKIRIVPLLPSV--------------------------RKAILEYYDLCPFDLNLNIQ 226
              K R                                  ++ I++ +            
Sbjct: 213 NLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHFREYGRTEKQKC 272

Query: 227 LPLF-------RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
             +F           G        ++      +  GL    +  + RH++A   L+ G +
Sbjct: 273 TFVFQPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQS-RHTYACWSLTAGAN 331

Query: 280 LRSIQSILGHFRLSTT-QIY 298
              I + +GH       Q+Y
Sbjct: 332 PAFIANQMGHADAQMVFQVY 351


>gi|85715942|ref|ZP_01046919.1| phage integrase [Nitrobacter sp. Nb-311A]
 gi|85697140|gb|EAQ35021.1| phage integrase [Nitrobacter sp. Nb-311A]
          Length = 433

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 83/252 (32%), Gaps = 24/252 (9%)

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQALTL 137
            ++    S  R L+ +K+ L         +            +   ++ R L+  +A  L
Sbjct: 191 ARRARKASANRILTMLKAALNRAFHAGRISSDGAWRKVKPFKRVDEAVVRYLSAAEARRL 250

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197
           V+                   ++      G R +E   L  ++   D  T+ ++    ++
Sbjct: 251 VNACSEDF-----------RKLVQAALLTGCRYAELARLKCRDFNADSGTVAVRLSKGRV 299

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R V L    + A   +               +F    G        +R + +     G+ 
Sbjct: 300 RHVVLTDEGKAAFQAWTSDRT------TADLVFIRADGAAWGTSHQKRPLEEASERAGIT 353

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQ 316
            + T H LRH+  +HL  NG  +  I + LGH     T+  Y ++        +   +  
Sbjct: 354 PAVTFHILRHTHGSHLAMNGVPMGVIAAQLGHADTRMTEKHYAHLAPSYVAQTIRANF-- 411

Query: 317 THPSITQKDKKN 328
             P +   D+ N
Sbjct: 412 --PELNISDRNN 421


>gi|325982077|ref|YP_004294479.1| hypothetical protein NAL212_1430 [Nitrosomonas sp. AL212]
 gi|325531596|gb|ADZ26317.1| Protein of unknown function DUF3596 [Nitrosomonas sp. AL212]
          Length = 361

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 107/280 (38%), Gaps = 38/280 (13%)

Query: 26  EIERGLSKL---TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
            ++R  +KL   TLQ Y       LI             TI +L+ ++++ ++S+     
Sbjct: 90  WLQRNQAKLQLSTLQDYNSAIYHHLI-------PTFGNLTISELTASKVKEWLSEL---P 139

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
             ++     L+ ++   + L   +I  ++ +  ++NL      P    +++ + +++ + 
Sbjct: 140 CSNKRKSNILTPLRQMFEELYLDEIIDKNPLSRVKNLPNKTREPEPFTQEEIIKILNELT 199

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----------- 191
               +           ++   +  GLR SE ++L  +N+  +Q+ + I+           
Sbjct: 200 GQAKN-----------LIQFAFYSGLRTSELIALCWKNVEFEQNRIFIKQAHVRGQLKDT 248

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
                 R V L P  ++A+L           +    P  +  +    +  + +       
Sbjct: 249 KTKSGKREVTLQPQAKEALLNQQAFTGKQNQIVFHNP--KTKQPWKNDQPIRKNVWIPAL 306

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291
           +  G+      +  RH+FA+ LLS G  L  +   +GH  
Sbjct: 307 KKAGIKYR-NPYQTRHTFASMLLSRGEKLLWVAQQMGHKD 345


>gi|85707317|ref|ZP_01038401.1| putative integrase/recombinase [Roseovarius sp. 217]
 gi|85707508|ref|ZP_01038584.1| putative integrase/recombinase [Roseovarius sp. 217]
 gi|85667965|gb|EAQ22850.1| putative integrase/recombinase [Roseovarius sp. 217]
 gi|85668198|gb|EAQ23075.1| putative integrase/recombinase [Roseovarius sp. 217]
          Length = 305

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 91/231 (39%), Gaps = 11/231 (4%)

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             +  R ++ +     +L     + E     +    ++  +P    + +    +    + 
Sbjct: 57  PDTRYRRITDVIRLATFLHAEDASHEIPPGGIFKAHRTKFIPYIFTDDELARFIVAARVR 116

Query: 145 TSHETKWIDARNSAILY-LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203
             +E+  +     A+L+ L+   GLRISEAL+LT  +++ D      + K  K R+VPL 
Sbjct: 117 QQNESSPVRREIYAVLFGLIASTGLRISEALNLTLSDVLPDGILHIRKTKFGKNRMVPLH 176

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN--PGVFQRYIRQLRRYLGLPLSTT 261
           PS+   +  Y +L       +  L L  G R    +     F   +       G P    
Sbjct: 177 PSMMGVLDRYLELRLDVAAEDDHLFLSEGKRKIYYSVPHRAFHEILAIAAIAPGRPRRPR 236

Query: 262 AHTLRHSFATHLLSNGG--------DLRSIQSILGHFRLSTTQIYTNVNSK 304
            H LRH+FAT +L   G        +  ++ + +GH  L  T  Y +   +
Sbjct: 237 IHDLRHTFATRVLEKSGAGREAIARNAVALMTYMGHSNLRYTYWYLHRTPE 287


>gi|167036524|ref|YP_001664102.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320114956|ref|YP_004185115.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166855358|gb|ABY93766.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319928047|gb|ADV78732.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 403

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 62/342 (18%), Positives = 127/342 (37%), Gaps = 62/342 (18%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            +++L+   +E   S L L++Y      +   +  Y    I    + +L+   I+   + 
Sbjct: 71  VKDYLKK-WLETKKSSLALKTY----NDYEQKIRLYINPAIGNYKLLKLTPLIIQNMYNN 125

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
              Q +  R+++ + + +   LK   K ++   +        K++    + L  +QA   
Sbjct: 126 MLEQGLSARTIRYTHTVLNEALKQAIKWQMLRYNPCDGTTLPKQAKKEMKVLTPEQAKKF 185

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----- 192
           ++  + +              +  LL   G+R SEAL L  ++I    + + +Q      
Sbjct: 186 LEACVYNRWG----------ILFELLLISGMRPSEALGLKWEDIDWKNNRIAVQRTLTRV 235

Query: 193 KGDKI----------RIVPLLPSVRKAILEYYD-----------LCPFDLNLNIQLP--- 228
           K +            R +PL   V   + E+                +D + N   P   
Sbjct: 236 KNNWQLKEPKTPQSRRTIPLPREVMNDLKEHRKQQSKEKLKAKEYINYDKDKNKFKPEEW 295

Query: 229 ---------------LFRGIRGKPLN-PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
                          +F    G+PL+   +  +Y + L +  GLP +   + LRH+ AT 
Sbjct: 296 EEKLKDPKVYVDYGLVFATETGRPLDLANINYQYFKPLLKNAGLP-NIRLYDLRHTCATL 354

Query: 273 LLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDWMMEI 313
           LL  G + + +   LGH  ++ T   Y++V      +   ++
Sbjct: 355 LLLAGENPKVVSERLGHANITLTLDTYSHVLPTMQEEATQKL 396


>gi|326382372|ref|ZP_08204064.1| phage integrase family protein [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199102|gb|EGD56284.1| phage integrase family protein [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 368

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 121/352 (34%), Gaps = 52/352 (14%)

Query: 9   IVSFELLKERQNWLQNL---EIERGLSKL----TLQSYECDTRQFLIFLAFYTEEKITIQ 61
           + S  LL+  +  ++++      + LS+     T+       R+F+           + +
Sbjct: 12  VESVPLLRPDERVVESMLDGWRNQQLSRNLQFDTIDQRARCVRRFIEH---------SNE 62

Query: 62  TIRQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYL---------KKRKITTES 111
                +   +  F +  R+   +   +L+   + +++F  Y+            ++    
Sbjct: 63  EPWNWTPAMVEEFSADLRSIHHVAHATLRGYHAALRAFCSYISNPDYGWDLVCEQLFGTH 122

Query: 112 NILNMRNLKKSNSL--------PRALNEKQALTLVDN------VLLHTSHETKWIDARNS 157
                 +   +  +         R   +++   L ++       +  TS +      R++
Sbjct: 123 PAQVFHDWNTARHIQQYDGQPTKRPYTKQELDALFEHADDEVARIGSTSRKGWQAAYRDA 182

Query: 158 AILYLLYGCGLRISEALSLTPQNI--------MDDQSTLRIQGKGDKIRIVPLLPSVRKA 209
            ++ L YG GLR +E   L   +                +I+         P   S+   
Sbjct: 183 TMMKLSYGYGLRFNEVRHLQTVDFARNPHAREFGRFGVCKIRYGKAHRGSPPKPRSILTV 242

Query: 210 ILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
                 +    L      P    +F   RG  +      R +R+    +G+P     H+ 
Sbjct: 243 WRWTPPVIEDWLANGRGDPDCLDMFPSERGGLVVESTLLRRVRRYCTDVGIPEGVDLHSF 302

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
           R S+ATHLL +  D R +Q  +GH   STT IY   + +     +    D+T
Sbjct: 303 RRSYATHLLEDDWDPRFVQDQMGHEYASTTGIYQFTSDEFRRSTLRSALDRT 354


>gi|17546273|ref|NP_519675.1| integrase/recombinase [Ralstonia solanacearum GMI1000]
 gi|17428570|emb|CAD15256.1| putative integrase/recombinase protein [Ralstonia solanacearum
           GMI1000]
          Length = 354

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 99/255 (38%), Gaps = 20/255 (7%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR--KITTESNILNMRNL 119
            +  L+ ++I+ +   +R Q +   ++ R L+ I + LK           +S + ++R  
Sbjct: 113 HLDNLTRSDIKEW-RDQRLQDVAPSTVNRELNIINAALKVAVHEWDVAICQSVLTSVRRP 171

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
                  R L+ ++     +  L     ET+  +     IL L     +R  E L L  +
Sbjct: 172 SNPPGRVRRLSPEE-----EAALRQAGEETR--NPYIVPILDLALNTAMRRGEILGLEWE 224

Query: 180 NIMDDQSTLR-IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRG 235
            I     +++ I+ K    R VPL     K +     +   +L    +L   P+F G   
Sbjct: 225 RISFAHRSIQLIETKNGTPRGVPLSRHAMKVLATLKQVAAHELGYEGELNSGPVFPG--- 281

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             L    F+    ++    GL  +   H LRH   + L   G  +  + SI GH  +   
Sbjct: 282 --LTANAFKLAFNRMMERAGLE-NFRFHDLRHEATSRLFEKGLSVMEVASITGHKDIRML 338

Query: 296 QIYTNVNSKNGGDWM 310
           Q YT++  K+    +
Sbjct: 339 QRYTHLQVKDLAAKL 353


>gi|301328247|ref|ZP_07221367.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 78-1]
 gi|300845276|gb|EFK73036.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 78-1]
          Length = 336

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/270 (21%), Positives = 110/270 (40%), Gaps = 38/270 (14%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR---SLS 93
           Q++E  T++F   L   +   I    + ++S   +  + S R    I   ++ R    LS
Sbjct: 84  QNHEHGTKEFNHLLKTISG--IGDIPVSRMSKRALMDYRSMRLRNGISAATINRDMYRLS 141

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
           G+  F K ++  + + +  I  +  L ++N     L + +   L++            +D
Sbjct: 142 GM--FTKLIQLDEFSGQHPIHGLPPLAEANPEMTFLEKAEIEKLLNV-----------LD 188

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
             +  +  L    G R +E  +L P  I + + T  ++ K  K R VP+   + K + E 
Sbjct: 189 GDDLLVALLCLSTGGRWTEVATLKPAQITNCRVTF-LKTKNGKKRTVPISEELEKKVKEE 247

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                F ++                      R ++       +P +   H LRH+FA+H 
Sbjct: 248 ASAKLFKVDYEKF--------------CGILRRVKP-----DIPPNQATHILRHTFASHF 288

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           + NGG++ ++Q ILGH  +  T  Y ++  
Sbjct: 289 MMNGGNIIALQQILGHASIQQTMAYAHLAP 318


>gi|167762936|ref|ZP_02435063.1| hypothetical protein BACSTE_01300 [Bacteroides stercoris ATCC
           43183]
 gi|167699276|gb|EDS15855.1| hypothetical protein BACSTE_01300 [Bacteroides stercoris ATCC
           43183]
          Length = 342

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/271 (15%), Positives = 94/271 (34%), Gaps = 22/271 (8%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T  +Y    R  L F   + ++ I+     ++    + A+    R + I   +L   +  
Sbjct: 54  TADNYATALRSLLAF---HGKKDIS---FAEVDSRLVDAYGEWLRRKGICKDTLSCYMRS 107

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +++      ++ +T +           S +  R++ +     L             ++  
Sbjct: 108 LRAVYNKAVEQGLTEQKEPFGNVFTGISRTRKRSIEKADINKL----RAVQVKPGSFMQL 163

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
                L+  Y CG+   +   L     +     +  + K D++  + L P +++ I  Y 
Sbjct: 164 VRDVFLFCFYACGMPFVDVAFLKKSQ-IKGGMLVYHRRKTDQVVQIKLEPCMQEIINRY- 221

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNP------GVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
                    +   P                    + + ++ L +  G+    +++  RH+
Sbjct: 222 ----RSDGSDYVFPFLTSQDEDTAYREYKRKFSYYNKTLKTLGKLAGVDKPLSSYVARHT 277

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           +AT    +  D+  I   LGH  + TT+IY 
Sbjct: 278 WATLAFMSSVDMSVIAQALGHTDVKTTRIYV 308


>gi|83722821|gb|ABC41682.1| integrase [uncultured bacterium]
          Length = 163

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 66/162 (40%), Gaps = 37/162 (22%)

Query: 177 TPQNIMDDQSTLRIQ-GKGDKIRIVPLLP---SVRKAILEYYDLCPFDLNLNIQLP---- 228
             +++  D   + +  GKG K R   L        K ++E   L   D NL    P    
Sbjct: 1   RVKDLDFDNGCITVHDGKGGKSRNSLLPTRLIPAIKQLIEQARLIQQDDNLQGVGPSLPF 60

Query: 229 -----------------LFRG-----------IRGKPLNPGVFQRYIRQLRRYLGL-PLS 259
                            +F             +    L+  V ++ ++   +  G+    
Sbjct: 61  ALDRKYPSAYRQAAWMFVFPSSTLCNHPYNGKLCRHHLHDSVARKALKATVQKAGIVSKR 120

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|331694988|ref|YP_004331227.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326949677|gb|AEA23374.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
          Length = 446

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 84/243 (34%), Gaps = 29/243 (11%)

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
           ++    +  ++++     +   L    +  +   +   + R  +         +  +   
Sbjct: 178 RQHDGGLAPKTVRNVHVMLHGALADAVRWNLLQRNPATDARPPRVRRRSHAIWSTDELRR 237

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-----RIQ 191
            V++               ++A+  L+   GLR SE   L   ++      L     R+ 
Sbjct: 238 FVEHARSD----------HHAALWLLVCTTGLRRSELAGLRRADLDLANGRLTSGETRVV 287

Query: 192 GKGDKI----------RIVPLLPSVRKAILEYYDLCPF--DLNLNIQLPLFRGIRGKPLN 239
             G             R + L P    A+ E+            +    LF    G+P++
Sbjct: 288 VGGQATDSDGKSDDSRRTLALDPVTVDALREFLVRWDELKQEFGHNGQHLFCHPDGRPIH 347

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IY 298
           P     +  +L    GLP     H +RHS+AT  L  G  ++ +   LGH  +S TQ  Y
Sbjct: 348 PDTITEWFARLSWEAGLP-PIRLHDVRHSYATAALRAGVPVKVVSERLGHSSVSFTQDTY 406

Query: 299 TNV 301
            +V
Sbjct: 407 MHV 409


>gi|322516798|ref|ZP_08069700.1| phage integrase family site-specific recombinase [Streptococcus
           vestibularis ATCC 49124]
 gi|322124635|gb|EFX96099.1| phage integrase family site-specific recombinase [Streptococcus
           vestibularis ATCC 49124]
          Length = 189

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 63/159 (39%), Gaps = 6/159 (3%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
           + AI+ LL   G+R+SEA++L  ++I      + +  KG K   V +    R  +  Y  
Sbjct: 30  DLAIIALLLASGVRLSEAVNLDLKDINLKMMVIDVTRKGGKRDSVNVASFARPYLENYLS 89

Query: 216 LCPFDLNLNIQL-PLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271
           +         Q   LF          ++    ++ + +  +   +    T H LRH+ AT
Sbjct: 90  IRDKRYKAEKQDVALFLTEYRGVPNRIDASSIEKMVAKYSQDFKI--RVTPHKLRHTLAT 147

Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
            L         +   LGH     T +YT++ +    + +
Sbjct: 148 RLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNAL 186


>gi|313906110|ref|ZP_07839460.1| integrase family protein [Eubacterium cellulosolvens 6]
 gi|313469050|gb|EFR64402.1| integrase family protein [Eubacterium cellulosolvens 6]
          Length = 316

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 89/254 (35%), Gaps = 31/254 (12%)

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
               +  +++ ++  L Y     I TE+ +  +   K           ++   L+   +L
Sbjct: 67  SASYVNSTMNIMRQILLYADPT-INTENLMHGIIKPKTVQKAIEVFTAEEQRRLL--CVL 123

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV--- 200
               +T          + +    G R+ E  +L   +I  +  T+ I     +I+     
Sbjct: 124 EQQPDTYKTG------ILICLLTGCRLGEICALKTDDISMENETIHIHSTVQRIQRPAES 177

Query: 201 -----PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN------------PGVF 243
                 L  S    ++        D  + +   L+  +   PL             P  +
Sbjct: 178 LSDEDMLGTSKTMLLVTAPKSQKSDRIIPLPDYLYSFLLEHPLYGEYVVNSTKLMEPRTY 237

Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN 302
           +      ++   +      HTLRH+FAT+ ++ G D + +  +LGH  ++ T   Y +  
Sbjct: 238 ENKFATYQKMAKI-KPKNFHTLRHTFATNCVAGGMDPKVLSELLGHSSVTITLNRYVHPT 296

Query: 303 SKNGGDWMMEIYDQ 316
           ++     + ++Y  
Sbjct: 297 NEMKKKQLNDVYKN 310


>gi|229092729|ref|ZP_04223874.1| Phage integrase [Bacillus cereus Rock3-42]
 gi|228690655|gb|EEL44433.1| Phage integrase [Bacillus cereus Rock3-42]
          Length = 387

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/323 (15%), Positives = 108/323 (33%), Gaps = 46/323 (14%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            ++WL      +   + T++  +         +  +         ++ L     + FI+ 
Sbjct: 73  LEDWL------KVYKENTVR--KNTFILHKRNIEKHIIPYFKNINLKDLKPMMYQNFINH 124

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM----RNLKKSNSLPRALNEKQ 133
              Q     ++K     + + +      K    +   ++    +N KK   L + +  + 
Sbjct: 125 LTDQGYSKGTVKIIHRTMNNAMCKAVSLKKIGTNPCDDVVISNKNQKKEEGL-KYMRTED 183

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
               +          +   +         L   G+R  EA +L   +I   + T+ I   
Sbjct: 184 IPRFLKA--------SYQYNYIYYIFFKTLINTGMRKGEAAALQWSDIDFKEQTINITKT 235

Query: 194 GDKI-----------------RIVPLLPSVRKAILEYYDLCP------FDLNLNIQLPLF 230
            D                   R + +   + K +L +            +   +    +F
Sbjct: 236 LDFTAKDDEELFGDTKTFSSRRTIMIPAPLAKDLLNHKKWQNENKLVLQESYKHDLDLVF 295

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
               G  L          ++ + + +P S   H+LRH+ A  LL +G +L+ IQ  LGH 
Sbjct: 296 TKTDGNFLPKSTLFNAFSRILKKVNIP-SLDIHSLRHTHAVLLLESGANLKYIQERLGHK 354

Query: 291 RLSTTQ-IYTNVNSKNGGDWMME 312
            +  T  +Y++++ K   D + E
Sbjct: 355 SIEMTSNVYSHISDKINKDSISE 377


>gi|317124017|ref|YP_004098129.1| integrase [Intrasporangium calvum DSM 43043]
 gi|315588105|gb|ADU47402.1| integrase family protein [Intrasporangium calvum DSM 43043]
          Length = 308

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 106/295 (35%), Gaps = 26/295 (8%)

Query: 23  QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82
           + L + R L          D  + L  LA    + +        +  +   +   R    
Sbjct: 10  EYLTMRRAL--------GYDLAK-LEHLAGQFCDWLAAAGKETFTTADAVEW--ARLPAG 58

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
              R     L  +++F KYL    +  +     +       + P   ++     LVD   
Sbjct: 59  ADPRWWGMRLGSVRTFAKYLHATGVDVQVPPAGILPAGPRRAAPFIYSQSDLDALVDAC- 117

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
                    + A    ++ LL   GLRI EAL LT  +I      L I+    K R+VP+
Sbjct: 118 -GQVFTRLLLAATMRTVIGLLAATGLRIGEALRLTTGDIDTVAGVLLIRASKRKDRLVPV 176

Query: 203 LPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL----P 257
            PS  +A+  Y DL      +     PL    RG        + +  +L    GL     
Sbjct: 177 HPSTVEALFAYRDLPARAAAHPATGGPLLVSTRGTGYQLSTIEAHFARLATAAGLRPRGA 236

Query: 258 LSTTAHTLRHSFAT-HL---LSNGGD----LRSIQSILGHFRLSTTQIYTNVNSK 304
                H LRH+FAT H+    S GGD    L  + + LGH   + T  Y + + +
Sbjct: 237 AHPRLHDLRHTFATAHMAAAYSRGGDPQRTLTLLATWLGHTSTAHTYWYLSASPE 291


>gi|229551651|ref|ZP_04440376.1| integrase [Lactobacillus rhamnosus LMS2-1]
 gi|229314969|gb|EEN80942.1| integrase [Lactobacillus rhamnosus LMS2-1]
          Length = 307

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 95/229 (41%), Gaps = 23/229 (10%)

Query: 95  IKSFLKYLKKRKITTESNILN--MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           +K  ++ +    +      L   +   +      + L  ++   L+ ++ L    +  + 
Sbjct: 79  LKCVIQDILDEGLIKRDPTLRAVIGGTRHREHKIKFLQPEELEKLLQDLNLGKELDYDY- 137

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR------IVPLLPSV 206
                 ++ LL   GLR +EAL LTP +   D  TLRI    D               SV
Sbjct: 138 ------MILLLAKTGLRFAEALGLTPADFDLDSLTLRINKTWDYKSATGKFAPTKNKSSV 191

Query: 207 RKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           R   L+Y     F +   +L    P+F    GK +        +++     G+P+  +AH
Sbjct: 192 RTIALDYKTAAKFAMLIQSLPKDKPIFV-PDGKRIYNETINDILKRHCENAGIPV-ISAH 249

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNV--NSKNGGDW 309
            LRH+ A+ L+  G +L+++   LGH    TTQ +Y ++  +++   D 
Sbjct: 250 GLRHTHASLLIGKGINLQAVAKRLGHSSSLTTQKVYIHLLKDTETSADA 298


>gi|218461906|ref|ZP_03501997.1| phage integrase [Rhizobium etli Kim 5]
          Length = 383

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/290 (18%), Positives = 105/290 (36%), Gaps = 25/290 (8%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +  + +L +   E  +   T + YE   R+ +I         +    I  L  ++I  
Sbjct: 81  LRELCERFLADYA-ETHVKAKTAKDYEQLIRKLII-------PALGRHGIADLKRSDISQ 132

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNLKKSNSLPRALNE 131
           F    R +        R+L+ +       ++  +  ++     ++   ++S    R L  
Sbjct: 133 FHHDLRDRPYLG---NRALAVLSKMFNLAEQWGLRDDNTNPCRHVPKFRESKRE-RYLTN 188

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
            +   L +  +L  +  +        A + LL   G R+SE   L  +++  +   LR+ 
Sbjct: 189 GELKRLGE--VLAQAETSNTESPHMIAAIRLLILTGARLSEITKLQWEHVDLEHGLLRLP 246

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
                 + + L  +    + +                +  G  G+ L     +    +LR
Sbjct: 247 DSKTGKKDIVLNDAALDVLKK------LPRASGNPYVIVGGRSGQHL--VNVKGPWGRLR 298

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  GL      H LRHSFA+     G  L  I  +LGH +  TT  Y ++
Sbjct: 299 KKAGLD-DLRIHDLRHSFASVAAGMGESLPIIGKLLGHTQTQTTARYAHL 347


>gi|237726754|ref|ZP_04557235.1| tyrosine type site-specific recombinase [Bacteroides sp. D4]
 gi|229435280|gb|EEO45357.1| tyrosine type site-specific recombinase [Bacteroides dorei
           5_1_36/D4]
          Length = 419

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/289 (19%), Positives = 101/289 (34%), Gaps = 34/289 (11%)

Query: 33  KLTLQSYECDT---RQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88
             T  SY       +    F+ + Y  E + ++++     T+   ++S     K+     
Sbjct: 113 DRTRHSYIRYLTTRKHIHNFMKYKYDMEDMPLRSLTMRFMTDFTFYLSTVLKLKVSA--Y 170

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--PRALNEKQALTLVDNVLLHTS 146
              L  +    +   K+ I            K    L   R L  +Q   L++  L    
Sbjct: 171 NDYLILLHKMTRLALKKHILKRDPFAGH---KIEKVLVNHRYLTGEQFEKLLNAKL---- 223

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRI-QGKGDKIRIVPL 202
               +       +       G+  ++  +LT  NI+   D    + I + K      + L
Sbjct: 224 --PTYRLCHTRDLFVFSTFTGIGRADLANLTEDNIITKKDGSKWIHIARQKTKAECHIKL 281

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           L    + I +Y               LF      P+  G   R ++ +    GL    T 
Sbjct: 282 LDIPLRIIEKYR-------GEGKDGKLF----YVPIT-GNLNRSLKMIAEQCGLECHLTY 329

Query: 263 HTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           +  RHSFAT   L+NG  + SI  ++GH  + TTQIY  + ++     +
Sbjct: 330 YQSRHSFATLICLNNGVPIESISKMMGHSSIRTTQIYAEITNQKVSRDL 378


>gi|223369850|gb|ACM88794.1| integrase [uncultured bacterium]
          Length = 163

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/111 (33%), Positives = 50/111 (45%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +G G       L      A   +     F      +       R   L+    QR +R+ 
Sbjct: 52  RGAGCVALPGALDRKYASAARAWEWQWVFPATTIYRDAASSERRRHHLHETAVQRAVREA 111

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               G+    T HT RHSFATHLL  G D+R++Q +LGH  L+TT IYT+V
Sbjct: 112 VLRSGVAKRATCHTFRHSFATHLLEQGSDIRTVQELLGHSDLATTMIYTHV 162


>gi|148988907|ref|ZP_01820322.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP6-BS73]
 gi|147925718|gb|EDK76794.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP6-BS73]
          Length = 388

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 83/232 (35%), Gaps = 22/232 (9%)

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNS---LPRALNEKQALTLVDNVLLHTSHETKWI 152
           K  LKY    +    +   ++   ++        + L++      +   L    +   + 
Sbjct: 147 KRILKYAVSLQAIPFNPARDVIVPRRKEKEGQKLKYLDDDNLKKFL-TYLEQLPN--TYK 203

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK------------GDKIRIV 200
           +  ++ +   L   GLRI E L+L   +I     TL +                  +R++
Sbjct: 204 NFFDTVLYKTLLATGLRIRECLALEWSDIDLKNGTLDVNKTLNIIKEITGPKTKSSVRMI 263

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            L       +  Y                 +F     K ++  +    + +     G P 
Sbjct: 264 DLDNKTVLMLRLYKARQSQIGKEMGLTYEKVFSNSFDKHIDARMLSFRLVKHLERAGCPR 323

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDW 309
             T H  RH+ A+ LL+ G   + IQ+ LGH +LS T  IY++++  N  + 
Sbjct: 324 -FTFHAFRHTHASILLNAGLPYKEIQTRLGHAKLSMTMDIYSHLSKDNQKNA 374


>gi|118465459|ref|YP_879786.1| transposase [Mycobacterium avium 104]
 gi|118166746|gb|ABK67643.1| putative transposase [Mycobacterium avium 104]
          Length = 401

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 61/346 (17%), Positives = 106/346 (30%), Gaps = 83/346 (23%)

Query: 23  QNLEIER--GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + L   R  G S  T+++Y      +   L+       T         T    ++   RT
Sbjct: 32  EYLRFLRDGGASPHTVRAYAAGIADWFTVLSH------TGHVWDDFPTTLFGQYLQFLRT 85

Query: 81  -------------QKIGDRSLKRSLSGIKSFLKYLKKRKITT------------------ 109
                        Q++   SL+   + + S  +Y                          
Sbjct: 86  GDLPGSARIGPPQQRLAASSLQPRAAAVLSMYRYHADAHHVDTPYRRLFTSRGSWRRYRR 145

Query: 110 --------------ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155
                         +  I  MR   ++      L   Q  T++D   +   H+  W    
Sbjct: 146 YVGFLDGVGPQRRGDHPIYRMRT--QNRCTTPVLTPPQVNTILDACSVQ--HDGTWSGGP 201

Query: 156 ----NSAILYLLYGCGLRISEALSLTPQNIMDDQS------TLRIQGKGDKIRIVPLLPS 205
               N  +  +L   G+R+ EALSL   +             +  Q     +R+      
Sbjct: 202 AAVRNRLLFAVLAETGMRLGEALSLRHHDFHIGAGATPFIEIVDRQDHPHGVRVKTGSRR 261

Query: 206 V-----RKAILEYYDLCPFDLNLNIQLP------LFRGIRGKP----LNPGVFQRYIRQL 250
           V      +A+   Y      +  ++++P      +F  +   P    +        +R +
Sbjct: 262 VYVGDDLEALYSEYVWQLVAMAADVEVPDLASHFVFVNLAHGPRFAAMRVETVYDKVRGI 321

Query: 251 RRYL-GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
           +R    LP   T H LRH+ AT LL  G     +   LGH  + TT
Sbjct: 322 KRAQPSLPAGWTPHWLRHTHATALLLAGVPEHVVMRRLGHADVQTT 367


>gi|189460471|ref|ZP_03009256.1| hypothetical protein BACCOP_01112 [Bacteroides coprocola DSM 17136]
 gi|189432715|gb|EDV01700.1| hypothetical protein BACCOP_01112 [Bacteroides coprocola DSM 17136]
          Length = 379

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/295 (19%), Positives = 114/295 (38%), Gaps = 33/295 (11%)

Query: 12  FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71
           ++ + E+ ++L   + E      +L+  +     +  F AF T  K T   I        
Sbjct: 84  YDKIVEKTDFLDYFKNE------SLKHNKKWIYVYQHFAAF-TNNKCTFADINVALCQRF 136

Query: 72  RAFI---SKRRT--QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
           R+++   +K R   +K+   S     S  +  LK   K+++  E+    +  + +  +  
Sbjct: 137 RSYLLNTAKLRDDSKKLKQNSAAGYFSTFRGMLKEAYKKRMLKENINDFLDRIPEEETEI 196

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
             L E +   +++N           I     AI++     G R S+ L+L  ++I +   
Sbjct: 197 NYLTEHELGLIINN--------ECPIPVLRKAIIFACI-TGFRRSDILALKWEDIKELPK 247

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246
                 K  +         +   ++E        L  N             L   +    
Sbjct: 248 GGWCVFKRMQKTKNMANVPIGDDLMEVIGPRGEGLVFNG------------LTTYMLTYP 295

Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +++  + +G+      H  RH++AT  L+ G D+ +I+++LGH + STT  YT V
Sbjct: 296 MKRWFKSIGIKKDLHFHCTRHTYATLSLALGTDIITIKNVLGHKQESTTMRYTKV 350


>gi|323344353|ref|ZP_08084578.1| integrase [Prevotella oralis ATCC 33269]
 gi|323094480|gb|EFZ37056.1| integrase [Prevotella oralis ATCC 33269]
          Length = 409

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/282 (20%), Positives = 110/282 (39%), Gaps = 27/282 (9%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS-LKRSLS 93
           TL+SY    +    F+   +E+  T   +      +    +      K+G      R ++
Sbjct: 133 TLKSYYTTRKHLQAFI---SEKYHTTDILFGQLEEDFLECLQHYSVGKLGHSQGYYRKMA 189

Query: 94  -GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +K   +   +  +T      ++   +  N  PRAL+      L    L    +E +  
Sbjct: 190 LTVKKVCRLAYREGLTERQLFAHVEIERGENKQPRALDRASLDKL--QALTFEPYEVELE 247

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRI---QGKGDKIRIVPLLPSVRK 208
            ARN  +       G+   + ++L  +++  DD+  L +   + K + +  V LLP    
Sbjct: 248 TARNLFLFSCF--TGVAYCDMVALNREHLFTDDEGGLWLKFRRQKTENLCRVKLLPEAVH 305

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            I +Y                 R     P+   V+   ++ L+   G+ +  +AH  RH+
Sbjct: 306 LIAQYQSDE-------------RTTLFAPIPYSVYLVQLKALQLRAGISIPLSAHVGRHT 352

Query: 269 FATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           FAT + L  G  + ++  +LGH  + TT+ Y +V  K   D 
Sbjct: 353 FATLITLERGVPIETVSRMLGHRNIQTTERYAHVTPKKLFDE 394


>gi|313895830|ref|ZP_07829384.1| site-specific recombinase, phage integrase family [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312975255|gb|EFR40716.1| site-specific recombinase, phage integrase family [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 363

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/300 (18%), Positives = 102/300 (34%), Gaps = 33/300 (11%)

Query: 35  TLQS----YECDTRQFLIFLAFYTEEKITIQTI---------RQLSYTEIRAFISKRRTQ 81
           TL+S    Y  D R  +    + T+E I    I          +++   IR + +     
Sbjct: 57  TLESLYHLYMEDLRHRIRPTTYSTKESIFSNRILPHLGQYPCDKITPKIIRQWQNLLVAD 116

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTLVDN 140
           +     LK     + S   +  K      + + ++  + K S    +     +    +  
Sbjct: 117 EYSPTYLKMINGQLVSLFNFAVKYYGLYVNPMKSVDTIGKSSAEAMQFWTVDEFNRFI-- 174

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK------G 194
                          +  I  LL+  G+R+ E L+LT  +   ++  +R+Q         
Sbjct: 175 --------LTQSSPLHKTIFMLLFWTGMRVGELLALTYADFDLEKKIVRVQKSYIRLKGK 226

Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           D I       S R   L  + +           PL    R   +     +R      +  
Sbjct: 227 DLIGPPKTPGSNRVVSLPSFLVDNLMSFFESLKPLDPNARLFIVTRASIRRLHTG-AKKA 285

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI-YTNVNSKNGGDWMMEI 313
           G+ L    H LRHS A++L+  G  +  +   LGH ++ TT   Y ++  K     +  I
Sbjct: 286 GVKL-IRIHDLRHSHASYLIHIGVPIMEVSKRLGHDKIETTLRTYAHLYPKEHDVVLEAI 344


>gi|295841243|dbj|BAJ07020.1| integrase [uncultured bacterium]
          Length = 428

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/294 (19%), Positives = 103/294 (35%), Gaps = 63/294 (21%)

Query: 22  LQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           L+ L  E   R  +  T ++Y     +FL +           + + +     +R+F+   
Sbjct: 157 LERLRSELRVRHYAFRTEKTYLHWVGRFLAWRRG--------RPVDEEIAAAVRSFLEDL 208

Query: 79  RTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137
             +  +   + +++L+ +  +L   K   +     + +    + S  LP  L+  +   L
Sbjct: 209 AIRGKVASGTQRQALNAVAFYL--HKVEGVPMGD-LGDFTYARSSRRLPVVLSRPEVERL 265

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDK 196
           +  +    S               LLYG GLR+ E L L  +++  + S + ++ GKG K
Sbjct: 266 LSALPSSLSLPGG-----------LLYGSGLRLMETLRLRVKDLDFELSQILVRDGKGKK 314

Query: 197 IRIVPLLPSVRKAI------------------------------------LEYYDLCPFD 220
            R+  L    R A+                                     ++     F 
Sbjct: 315 DRVTILPDRYRSALEDHLEIVREIHEQDLKRGFGSSTFWPSLERKYPRAPQQWPWQFVFP 374

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
                  P     R   L+    QR + +     G+    T HTLRHSFATHLL
Sbjct: 375 STRLTVDPATMTARRHHLHHTALQRGVTEAAARAGIDKCVTCHTLRHSFATHLL 428


>gi|295085954|emb|CBK67477.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 386

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 109/287 (37%), Gaps = 26/287 (9%)

Query: 36  LQSYECDTRQFLIFLAFYTEEKITIQTIR--QLSYTEIRAFISK-RRTQKIGDRSLKRSL 92
             +Y     ++   L+ Y ++K+  + I    L    I+ + +     + +   +    +
Sbjct: 106 QSTYRGLVDEY-KCLSCYLKDKLGTEDIPLMSLDMDFIKNYYNWMLSVRGLAKSTAFERV 164

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
           + +K  +          +          +    P  L+E+    ++   L +   +    
Sbjct: 165 NTLKWLMYLAMDEGWIHKHPFKKFVCKPEYKKRP-FLSEEDLQRVISVKLSYRRQQAI-- 221

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQ--NIMDDQSTLRI--QGKGDKIRIVPLLPSVRK 208
                 +   +   GL  ++   L+ +  +   D +T  +  + K     +V LLP   +
Sbjct: 222 ----RDMFVFMCFSGLAHADLKELSYRNVHTDSDGNTWLVGNRVKTKAPYVVKLLPIAVE 277

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            I +Y  +  F ++ +   P+           G  +  ++++    G  +  + H  RH+
Sbjct: 278 LIEKYRGVNEFKVSPDRVFPVGE--------IGSMEDSLKRIGEKAGCSVRVSPHVGRHT 329

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG---DWMME 312
           FAT  LS G  L ++Q +LGH  + +TQ+Y  + +   G   D M E
Sbjct: 330 FATLALSKGMPLETLQKVLGHKTIISTQVYAELINPKIGEDTDRMRE 376


>gi|149003143|ref|ZP_01828052.1| DNA-damage-inducible protein D [Streptococcus pneumoniae SP14-BS69]
 gi|237651082|ref|ZP_04525334.1| integrase [Streptococcus pneumoniae CCRI 1974]
 gi|237821195|ref|ZP_04597040.1| integrase [Streptococcus pneumoniae CCRI 1974M2]
 gi|147758884|gb|EDK65880.1| DNA-damage-inducible protein D [Streptococcus pneumoniae SP14-BS69]
          Length = 388

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 83/232 (35%), Gaps = 22/232 (9%)

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNS---LPRALNEKQALTLVDNVLLHTSHETKWI 152
           K  LKY    +    +   ++   ++        + L++      +   L    +   + 
Sbjct: 147 KRILKYAVSLQAIPFNPARDVIVPRRKEKEGQKLKYLDDDNLKKFL-TYLEQLPN--TYK 203

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK------------GDKIRIV 200
           +  ++ +   L   GLRI E L+L   +I     TL +                  IR++
Sbjct: 204 NFYDTVLYKTLLATGLRIRECLALKWSDIDLKNGTLDVNKTLNIIKEITGPKTKSSIRVI 263

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            L       +  Y                 +F     K ++  +    + +     G P 
Sbjct: 264 DLDNKTVLMLRLYKARQSQIGKEMGLTYEKVFSNSFDKHIDARMLSFRLVKHLERAGCPR 323

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDW 309
             T H  RH+ A+ LL+ G   + IQ+ LGH +LS T  IY++++  N  + 
Sbjct: 324 -FTFHAFRHTHASILLNAGLPYKEIQTRLGHAKLSMTMDIYSHLSKDNQKNA 374


>gi|291542119|emb|CBL15229.1| Site-specific recombinase XerD [Ruminococcus bromii L2-63]
          Length = 310

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 85/213 (39%), Gaps = 22/213 (10%)

Query: 103 KKRKITTESNILN--MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
               +          ++        P+ LN+ +   L+D++ L       W        +
Sbjct: 91  VDEGLILHDPTRKAIIKGKTPREKKPKFLNQYELHKLLDDLNLTEQINMDW-------FI 143

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEYYD 215
            L+   G+R SEAL+LTP++    +  L +    D       LP     SVRK  L++  
Sbjct: 144 LLIAKTGMRFSEALALTPKDFDLSRQLLSVSKTWDYKGNGGFLPTKNESSVRKIPLDWQT 203

Query: 216 LCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +  F     +L    P+F   +            + +  R   +P+  + H LRH+ A+ 
Sbjct: 204 VIQFAELIKHLPEDKPIFVSKKVYNSTANSI---LAKHCRNAEVPI-ISIHGLRHTHASL 259

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           LL  G  + S+   LGH  ++TTQ  Y ++  +
Sbjct: 260 LLFAGVSIASVARRLGHSNMTTTQKTYLHIIQE 292


>gi|255008467|ref|ZP_05280593.1| putative bacteriophage integrase [Bacteroides fragilis 3_1_12]
 gi|313146195|ref|ZP_07808388.1| site-specific recombinase [Bacteroides fragilis 3_1_12]
 gi|313134962|gb|EFR52322.1| site-specific recombinase [Bacteroides fragilis 3_1_12]
          Length = 380

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 100/268 (37%), Gaps = 31/268 (11%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRT---------QKIGDRSLKRSLSGIKSFLKYLKKRK 106
           +K+ I+ +RQ+    I  FI   +T         + I   +           L      +
Sbjct: 124 DKLGIK-LRQIDKKYILGFIEYLKTATQKHCKSIKHINANTQVYYYKVFHYCLNSAIIDE 182

Query: 107 ITTESNI---LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           I   + +         K+  +    L   +  TL          +T + +          
Sbjct: 183 IIISNPMDKIKKEEKPKRKRTERAFLTIDEVKTL---------SQTDFHNKTLKRAFLFS 233

Query: 164 YGCGLRISEALSLTPQNIMDDQ-STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
             CGLR S+ ++LT  N+  ++   + +     K + +  LP   +A+ +          
Sbjct: 234 CFCGLRHSDIVALTWGNLKKNKIGKIELHMTQQKTQELLSLPLSNEALKQLPVRG----K 289

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
                 +F+G+    ++ G     + +     G+    T H+ RH+ AT +++ G DL +
Sbjct: 290 AQDTEKVFKGL----ISLGRTNEILPRWAAKAGIQKHITFHSARHTHATMMITLGADLYT 345

Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           +  +LGH  + TTQIY  +  ++    +
Sbjct: 346 VSKLLGHTNIQTTQIYAKIVDESKEKAI 373


>gi|227519604|ref|ZP_03949653.1| integrase family protein [Enterococcus faecalis TX0104]
 gi|227072954|gb|EEI10917.1| integrase family protein [Enterococcus faecalis TX0104]
 gi|315168777|gb|EFU12794.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1341]
          Length = 376

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 108/295 (36%), Gaps = 25/295 (8%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
           +    +    +  +   +     I ++   +   ++++  T  +   S K   S   S L
Sbjct: 80  KSTLAKLNRAIRLHILPQFAYYKITEIRRIDCINWVNEMCTH-LSIESAKSYCSTFNSAL 138

Query: 100 KYLKKR-KITTESNILNMRNLKKSNSL--PRALNEKQALTLVDNVLLHTSHETKWIDARN 156
           +      K+   + + N++  K        +   +++   L+            +I+ + 
Sbjct: 139 EDAVNDFKLIDSNPMKNIKYPKTEKRKTAIQFFEKRELQNLL-VTAESYKGTKPFINYQY 197

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDD-------------QSTLRIQGKGDKIRIVPLL 203
             + +LL   GLR+ EAL+L  +++ +D             Q+ +         R + L 
Sbjct: 198 YVLTFLLARTGLRLGEALALKWEDVTEDKLTVSKTLYRENNQNFITTPKTISSYRTIILD 257

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPL-----FRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
               + +  +          +    L     F   +G  L    ++ Y   +     +P 
Sbjct: 258 KKCIELLKSFKIKKIEHSLKSNAFILNKEFVFTDSKGDFLKQCNYRTYFTTICTLADVPK 317

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMME 312
             + H LRHS A HLL +G +++ +   LGH  ++ T  +Y +V+ K   + +  
Sbjct: 318 -LSPHALRHSHAVHLLESGSNIKFVSERLGHHTINMTANVYLHVSKKMETESISR 371


>gi|94442296|dbj|BAE93647.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 52/110 (47%)

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G G       L      A   +     F        P    +R   +     Q+ +++  
Sbjct: 52  GHGRVWLPYALAEKYPNADRSFEWQYVFPATKLSVDPRSGAVRRHHIGESSMQKAVKRAL 111

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
              G+  + + H+LRHSFATHL+ +G D+R++Q +LGH  +STT IYT+V
Sbjct: 112 ATAGIEKNASCHSLRHSFATHLIESGTDIRTVQELLGHKDVSTTMIYTHV 161


>gi|227484863|ref|ZP_03915179.1| possible phage integrase [Anaerococcus lactolyticus ATCC 51172]
 gi|227237223|gb|EEI87238.1| possible phage integrase [Anaerococcus lactolyticus ATCC 51172]
          Length = 377

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/308 (15%), Positives = 113/308 (36%), Gaps = 37/308 (12%)

Query: 34  LTLQ--SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
            T++  SY+     F   +  +   K+    ++ ++   ++   +K+  +      +   
Sbjct: 77  KTVKYSSYQRTKSLFNTHIYPFIGNKL----LKSITTAMLQELTNKKSKELASFSKIN-- 130

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT--SHET 149
            + IK    Y   R I   +  L++     + +   +++  +++   +   L    +   
Sbjct: 131 -AQIKRVFDYAISRDIVDYNPALSVIYPITNVN---SVDRYESIEFWEKDELKEFLTACK 186

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----------------K 193
           K +D       ++L   G+R SE  +L   +I  ++ T+ I                   
Sbjct: 187 KDLDFMWFCYFWILSYTGMRKSELQALEWADIDFNRRTININKSLSVYKDNKKFISSTKT 246

Query: 194 GDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
            +  RI+ +     K +L++            +    Q  +F     +  +    ++   
Sbjct: 247 KNSTRIITIDSITVKLLLDWKQQQSEIYKKTVIKGKTQKYVFTDKSLELTSHNAPRKRFL 306

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGG 307
           ++ +   L      H+LRH+ A+     G D++ +Q  LGH  + TT  IY +++     
Sbjct: 307 RVLKNNNL-RKIRLHSLRHTHASLCFEAGMDIKDVQHRLGHSNIETTLNIYVHISKIKER 365

Query: 308 DWMMEIYD 315
             + +  D
Sbjct: 366 KSISKFED 373


>gi|158314368|ref|YP_001506876.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158314559|ref|YP_001507067.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158109773|gb|ABW11970.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158109964|gb|ABW12161.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 355

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 61/317 (19%), Positives = 109/317 (34%), Gaps = 52/317 (16%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
           GL+  T++S   +  Q   +      E         +   +   +  +          L 
Sbjct: 37  GLTDGTIRSDVGNLEQIRSWFGRALWE---------MEPADADVYFGRVLRGSPSGTRLA 87

Query: 90  RSLSGIKSFLKY---------LKKRKITTESNILNMRNLKKSN----SLPRALNEKQALT 136
           R+ + + ++ ++          +      +  +  M   + S      +P    +++   
Sbjct: 88  RA-AALSTYFEFVELRHKVEIHRMTGRVVQCPLDEMNRPRGSKDARLRIPPV--DREIAE 144

Query: 137 LVDNVLLHTSHETKW-IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQ- 191
           L        +   K+   ARN     L+   GLR++EA SL   +I  +      L ++ 
Sbjct: 145 LFSGWSRELATCRKFAPSARNYTAARLMAEVGLRVNEARSLDLADIRWELGRFGKLHVRH 204

Query: 192 -----GKGDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243
                G G + R+VPL+    + +  Y         + +     PLF   R    N    
Sbjct: 205 GKGAHGSGPRERMVPLINHAGQTLRWYVEDVWGHFDEDHTRHGAPLFPSERR---NVDGA 261

Query: 244 QRYIRQLRRYLGL-----------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
              +       GL               T H LRH  A+ +  NG DL SIQ +LGH  +
Sbjct: 262 PARVGYDALRSGLAAAAAEHLPAWKSRLTPHILRHYCASQMYLNGIDLVSIQEMLGHSWV 321

Query: 293 STTQIYTNVNSKNGGDW 309
           +TT  Y +V+     D 
Sbjct: 322 ATTMRYVHVHRTRIEDA 338


>gi|227497442|ref|ZP_03927674.1| phage integrase [Actinomyces urogenitalis DSM 15434]
 gi|226833118|gb|EEH65501.1| phage integrase [Actinomyces urogenitalis DSM 15434]
          Length = 294

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 95/262 (36%), Gaps = 31/262 (11%)

Query: 75  ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
           +     ++I   +     + +++F  +       T S    +  +++    P  L +   
Sbjct: 53  LQWYTDREIALETRHSLRTTLRAFYAWGVAAGHLTTSPADVIPPVRRPGPNPHPLPDD-- 110

Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQG 192
             L+   L                IL      GLR +E  ++  ++++       L + G
Sbjct: 111 --LLGQALAKADARQT-------LILRCAAEAGLRRAEIAAIHARDLLQTSGGTVLAVHG 161

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           KG K R+VPL P +   + +         N +         +G  L+       +R L  
Sbjct: 162 KGSKQRLVPLAPGLAALLTD-------ATNADPHGYALPNGQGSHLSAERVADSVRHL-- 212

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
              +P   T H LRH FAT       DL S+Q +LGH   +TTQ Y   ++      +  
Sbjct: 213 ---IPSPYTLHALRHRFATTAYDATRDLFSVQRLLGHASPTTTQRYVATDADQLRAVVAA 269

Query: 313 IYDQT------HPSITQKDKKN 328
           +  ++      HP    +  +N
Sbjct: 270 VAQRSEYAALPHPIPGPERGRN 291


>gi|221209968|ref|ZP_03582949.1| phage integrase [Burkholderia multivorans CGD1]
 gi|221170656|gb|EEE03122.1| phage integrase [Burkholderia multivorans CGD1]
          Length = 416

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 61/361 (16%), Positives = 122/361 (33%), Gaps = 59/361 (16%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           +I +   L   + WL         +  T Q+Y  +  + L++      + ++  ++    
Sbjct: 59  QIAATNDLDAVRAWLARFAD----TPTTFQNYRKEAERLLLWAVIACGKPLS--SLTHED 112

Query: 68  YTEIRAFI-------------SKRRTQK----------IGDRSLKRSLSGIKSFLKYLKK 104
               R F+              ++  +           +   S ++++  + +   +L +
Sbjct: 113 LVGYRQFLLAPAPADVWCANGGRKHPRGDPRWRPFYGPLSPASQRQAMVILNAMFSWLVQ 172

Query: 105 RKITTESNIL--NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA--IL 160
                 + +     R  + +  + R L       + D +      + +     + A  + 
Sbjct: 173 AGYLAGNPLALSRQRQRRPAPRITRHLGPLLWQAVKDAIAALPRDDARASFHADRARWVF 232

Query: 161 YLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            LLY  GLRI+EA   T             D+  L + GKG + R+VP    +   +  Y
Sbjct: 233 TLLYLGGLRITEAAETTMGRFFCRRDASGRDRWWLDVTGKGGRRRLVPATDELMTELARY 292

Query: 214 YDLCPFD----LNLNIQLPLFRGIRGKPLNPGVFQRYIRQL---------------RRYL 254
                       + +  L L  G   +PL      R ++Q+                   
Sbjct: 293 RRAHGLAPLPVADEDTPLVLPFGQARRPLTRAALHRIVKQVFRHAADRLRAQGDAGAEQA 352

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            +    +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +         E +
Sbjct: 353 RVLEQASAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHADDDWRHRETEEKH 412

Query: 315 D 315
            
Sbjct: 413 R 413


>gi|317123939|ref|YP_004098051.1| integrase [Intrasporangium calvum DSM 43043]
 gi|317126599|ref|YP_004100711.1| integrase [Intrasporangium calvum DSM 43043]
 gi|315588027|gb|ADU47324.1| integrase family protein [Intrasporangium calvum DSM 43043]
 gi|315590687|gb|ADU49984.1| integrase family protein [Intrasporangium calvum DSM 43043]
          Length = 366

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 88/257 (34%), Gaps = 38/257 (14%)

Query: 85  DRSLKRSLSGIKSFLKYLKKR---------KITTESNILNMRNLKKSN-----SLPRALN 130
             ++    + +  F +++  R                I      +         +P    
Sbjct: 87  TSTVAGKATALAKFYEFVIARYQGDIHALFGQVVTQPIDEFNRPRAVAAATAARIPP--T 144

Query: 131 EKQALTLVDNVLLHTSHETKWI-DARNSAILYLLYGCGLRISEALSLTPQNIMDD---QS 186
             +   L  +         K++  AR+     L    GLRI+E + L   +   D     
Sbjct: 145 TDEVGALFASWGQALPVARKYLPAARDYLAASLWRRVGLRINETVMLDIGDWHPDLGAHG 204

Query: 187 TLRIQ-GKGDKIRIVPLLP----SVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKP 237
            L ++ GKG + R   +          A+LE++         D   +   PL    R   
Sbjct: 205 KLHVRHGKGSRGRGAKIRIVPAIDEVDALLEWWLTDVRHQFGDDADDPSAPLLPSERRDA 264

Query: 238 LNPGVFQRYIRQLRRYLG---------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +     +     LR  LG              T H LRH  A+HL   G  L++IQ ++G
Sbjct: 265 MTGHATRIGAEALRAGLGHAVQAWLPTWTGRLTPHVLRHYCASHLYQQGMSLKAIQELMG 324

Query: 289 HFRLSTTQIYTNVNSKN 305
           H  LSTT  Y +V+S +
Sbjct: 325 HSWLSTTTQYIHVHSTH 341


>gi|322433742|ref|YP_004215954.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321161469|gb|ADW67174.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 346

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/275 (18%), Positives = 105/275 (38%), Gaps = 27/275 (9%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY- 101
            R+ L     +  E+  I +++ +    + AF    R       S     S +  F ++ 
Sbjct: 44  VRKLLCPFFRFLWER-GIVSLKDVVPATVTAFQVWARENGFA--SAATDTSALSVFFQWL 100

Query: 102 LKKRKITTESNIL-NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
           + + +   +S ++  +   +K     R  +++    +   + +  +           A  
Sbjct: 101 IVEERYFEDSPVIPAIHGKRKRARTGRPYSQEDISQIRQLLDVRGNERL-------RAFF 153

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRI--QGKGDKIRIVPLLPSVRKAILEYYDLCP 218
            +    GLR SE   L  ++++ +Q +L++    K    R+          ILE+  +  
Sbjct: 154 EIANESGLRKSEIYRLRLEDLVIEQRSLKVGLPNKSMTERLAFFGDRASCRILEWLSVRK 213

Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL---------RRYLGLPLSTTAHTLRHSF 269
            D        LF    G PL     Q   +++             GL  + + H LRH+ 
Sbjct: 214 PDCG---HGFLFHNHYGAPLLRNTTQEEFKRILCKMYRGRMAHETGLE-TFSIHRLRHTL 269

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
           A+ L SNG D  ++ ++LG    S+ + YT ++ +
Sbjct: 270 ASKLASNGADANTLMNVLGWVSPSSLESYTRLSEE 304


>gi|298384323|ref|ZP_06993883.1| mobilizable transposon, int protein [Bacteroides sp. 1_1_14]
 gi|298262602|gb|EFI05466.1| mobilizable transposon, int protein [Bacteroides sp. 1_1_14]
          Length = 347

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 86/251 (34%), Gaps = 32/251 (12%)

Query: 71  IRAFISKRRTQKIGDRSLKR-----SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
            R ++   +  K  +R +         S  +  LK   + K   E+    +  ++  +  
Sbjct: 118 FREYLLNAKQLKHSNRPISLNSASGYYSTFRGLLKIAYRDKWFRENINDYLDKIEPQDVK 177

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--- 182
              L   +   L           T        A        GLRIS+ L+L  ++     
Sbjct: 178 KEYLTLNEVKQL---------AATPCDIPVLKAASLFACLTGLRISDILNLQWEDFTIAP 228

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           D    LRI+ +  +           +A L                 +F+      L   +
Sbjct: 229 DQGYCLRIRTQKTQT----------EATLPISYEAYELCGTPGTGKVFKD-----LKRSM 273

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               ++   +  G+    T H  RHS+A   +S G D+ ++  +L H  +STTQIY ++ 
Sbjct: 274 INYPLKSWLKKAGITKPITFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLV 333

Query: 303 SKNGGDWMMEI 313
           +    +   +I
Sbjct: 334 NSKKRETANKI 344


>gi|295397658|ref|ZP_06807733.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563]
 gi|294974121|gb|EFG49873.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563]
          Length = 389

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/294 (15%), Positives = 103/294 (35%), Gaps = 46/294 (15%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102
               +  L  +  +KIT    + L     R F +      +  R L+ +   +K      
Sbjct: 98  LNHIVPNLGKHYVDKITPIMCQSLVNKFTREFTNYSNMIGLATRILEYARKTLK------ 151

Query: 103 KKRKITTESNILNMRNLKKSNSLPR------ALNEKQALTLVDNVLLHTSHETKWIDARN 156
               +  ++ + ++   +K+  L          + ++ +  ++          K  D + 
Sbjct: 152 ----LIDDNPMKDVERPRKARKLKSERYEAPYFSREELVYFLEC-------AKKMNDPKA 200

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-----QGKGDK-----------IRIV 200
            AI++L+   G+R  EA  L  ++  +  +T+ I     +GK  +            R +
Sbjct: 201 YAIIHLMSFTGIREGEACGLMWKDFDEVNNTITIERAIIRGKNFEKKVGTTKSSASERTI 260

Query: 201 PLLPSVRKAILEY------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
            +     + +  +                     +F   + +   P      I+ + +  
Sbjct: 261 SIDDETAQVLRNWKSKQKEIMFMLGYNTSGKNQFMFTNDKNEIYQPLYAYDRIQAVCKKF 320

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST-TQIYTNVNSKNGG 307
                 TAH LRH+  T LL  G  ++ +Q  LGH       ++Y+++N ++  
Sbjct: 321 PEIGKMTAHGLRHTHVTLLLEAGMSIKEVQERLGHENTKMVLEVYSHINKESSK 374


>gi|315504954|ref|YP_004083841.1| integrase family protein [Micromonospora sp. L5]
 gi|315411573|gb|ADU09690.1| integrase family protein [Micromonospora sp. L5]
          Length = 367

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/315 (18%), Positives = 117/315 (37%), Gaps = 21/315 (6%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            ++++Q + +   ++  + + YE   ++             T   I  L   +IRA    
Sbjct: 44  FRDYIQRVSV--AVAPGSRRLYESYWKRIDQCWGERQLNDPTPSEISAL-VEQIRASAVV 100

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT--TESNILNMRNLKKSNSLPRALNEKQAL 135
           R   + G  + + ++S ++    +     +    E     +   ++  S   AL E+Q  
Sbjct: 101 RSNSRGGRSAAEHTVSALRCLYAFAVADGLIAEAEDPARRVAKPRRLPSNRHALTERQLA 160

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            +V++ +   +         +S IL L      R   AL L   ++  D   +R+  KG 
Sbjct: 161 QIVEHAVSTGNDP-----HLDSLILRLHIETACRRGGALGLDRADLDLDNCCIRLTEKGG 215

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
            +R  P+ PS+ + ++ +Y+      N      L     G PL    +    ++L R L 
Sbjct: 216 TVRWQPVSPSMLRMLVRHYEERR---NNGGDTHLLSYRSGAPLTSRRYDHLWQRLGRRLP 272

Query: 256 L--PLSTTAHTLRHSFATHLLSNGGDLRSIQS-ILGH---FRLSTTQIYTNVNSKNGGDW 309
                  + H LRH+  T +  N G   +I     GH        T  Y   +  +    
Sbjct: 273 WVQAQQVSTHWLRHTTLTWVERNFG--YAIARAYAGHSGRSDAGVTSTYVKADIYDVARA 330

Query: 310 MMEIYDQTHPSITQK 324
           +  +  + HP + ++
Sbjct: 331 LSSLSGEPHPLVAEE 345


>gi|89147386|gb|ABD62553.1| integrase [uncultured bacterium]
          Length = 163

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRH 267
           A  +   +  F  +     P    +    L+  V ++ ++   +  G+     T HT RH
Sbjct: 69  AYRQPAWMFIFPSSTLCNHPYSGKLCRHHLHDSVARKALKAAVQKAGILNKRVTCHTFRH 128

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFATHLL  G D+R++Q +LGH  + TTQIYT+V
Sbjct: 129 SFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162


>gi|152976339|ref|YP_001375856.1| phage integrase family protein [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152025091|gb|ABS22861.1| phage integrase family protein [Bacillus cytotoxicus NVH 391-98]
          Length = 376

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/297 (16%), Positives = 106/297 (35%), Gaps = 37/297 (12%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             TL  Y+   R            +   + +  +    +  F  K   + +  + +    
Sbjct: 80  PSTLYQYKRILRS-------RVMPEFGDKKLSNIKPLTVHNFHQKMIKEGLTTKYISSVD 132

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +K  L    + ++ + +     +  K       +   +QA+T +D   L  S+     
Sbjct: 133 VMLKQILDKGVELEMISSNPAKKAKRPKVKKKAQASWTIEQAMTFIDCAKLKGSY----- 187

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---------------GKGDKI 197
                    L    G+RI E L+L   +I  ++ T+ +Q                     
Sbjct: 188 ----YIAFVLALHTGMRIGEVLALQWGDIDFEKKTIHVQRTLTLVDGKYVLGETKTEASN 243

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R++P+   +   ++EY          N    L      K ++P   +  ++ L   + +P
Sbjct: 244 RVIPMTEELVDELVEYQKYK----KENPLDLLICTRNKKIVHPYTIRYQMKALCEAIDVP 299

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
                H +R +F T L+ +  + + +  +LGH  +ST+  IYT+V  +   +   ++
Sbjct: 300 Y-IRFHDIRRTFTTILIDSNVNAKVVAKLLGHTNVSTSLNIYTDVYEERQIEAAEKL 355


>gi|319643438|ref|ZP_07998061.1| hypothetical protein HMPREF9011_03662 [Bacteroides sp. 3_1_40A]
 gi|317384843|gb|EFV65799.1| hypothetical protein HMPREF9011_03662 [Bacteroides sp. 3_1_40A]
          Length = 409

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/308 (14%), Positives = 116/308 (37%), Gaps = 24/308 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
             ++ +++ + +  E+  ++ T +    D +  L+F+   +++      I +L  + I  
Sbjct: 112 FREQLESYKEKVGKEK--AESTYRGLVADYKNLLLFMK--SKKNTEDIVIEELDKSFIED 167

Query: 74  FISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + +    T  + + +    ++ +K  +   +++         +   + +       L+E+
Sbjct: 168 YYNWMLGTCALANSTAFGRVNTLKWLMYIAQEKGWIRVHPFASFECMPEYKRR-SFLSEE 226

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ--NIMDDQSTLRI 190
           +   ++   L +              +   +   GL  ++  ++T    +   D  T  +
Sbjct: 227 ELQRIIRIELRYKRQRAM------RDMFLFMCFTGLSYADLKAITYDNIHTDSDGGTWLM 280

Query: 191 --QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
             + K     +V LLP   + I +Y        +     P+        L+ G+      
Sbjct: 281 GNRIKTGVAYVVKLLPIAIELIEKYRGADEKKDSPECVFPV-GEYNAMRLSLGII----- 334

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
              R        T H  RH+FA   +  G  L ++Q +LGH  + +TQ+Y  + +   G+
Sbjct: 335 --GRKCNCRAEVTPHIGRHTFAVLAILKGMPLETLQKVLGHKSILSTQVYAELINPKVGE 392

Query: 309 WMMEIYDQ 316
              +I ++
Sbjct: 393 DTDKISEK 400


>gi|89147588|gb|ABD62653.1| integrase [uncultured bacterium]
          Length = 163

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 49/91 (53%)

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            E+     F        P+    R    + G   R ++   +  G+    +AHTLRHSFA
Sbjct: 72  HEFGWQYVFPSPRRSIDPVDGVERRHHFDDGTLSRSLKSACKRAGIVKPVSAHTLRHSFA 131

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           TH++  G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 132 THIIEAGYDIRTVQELLGHKDVATTQIYTHV 162


>gi|253569542|ref|ZP_04846952.1| tyrosine type site-specific recombinase [Bacteroides sp. 1_1_6]
 gi|251841561|gb|EES69642.1| tyrosine type site-specific recombinase [Bacteroides sp. 1_1_6]
          Length = 452

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/297 (17%), Positives = 115/297 (38%), Gaps = 31/297 (10%)

Query: 46  FLIFLAFYTEEKITIQTI--RQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYL 102
           F  FL    +      +I    ++   + A+I  RR  ++  D ++  SL+ I     Y 
Sbjct: 156 FQTFLRSTKQGTYRTDSIYVGDITPELLDAYILWRREIKQNSDATINHSLTPILKACAYA 215

Query: 103 KKRKITTESNILNMRNLKKSNSLP----------RALNEKQALTLVDNVLLHTSHETKWI 152
            +  +   S    +++++    +           ++LN++Q L L++          K  
Sbjct: 216 CEMGMLEPSVNARIQDMRIITKVSLSEEESEFDGKSLNKEQLLALLEYYKTCPEPRRK-- 273

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSVRKAIL 211
                   +  + CGLR+ + ++L   +I  ++  LR I  K +K  ++PL       + 
Sbjct: 274 -EFLEIFFFAFHACGLRVVDVMTLQWGHINFEKKELRKIMIKTNKRHVIPLTEQAISILR 332

Query: 212 EYYDLC----------PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           ++ +              +L+L+    L++             + +  +   +GLP + +
Sbjct: 333 QWQEKREGCKYVFNLVKEELDLDDAEALYKARNNA---TKCINQSLVVVGEQIGLPFNLS 389

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYDQT 317
            H  RHSFA   L+ G  +  +  +LGH     T+ +Y     +     +  + D+ 
Sbjct: 390 MHVARHSFAVFALNKGLSMTVVSRLLGHGSTDVTEKVYARFLPETLSTEVARLKDEF 446


>gi|149913568|ref|ZP_01902101.1| Integrase [Roseobacter sp. AzwK-3b]
 gi|149812688|gb|EDM72517.1| Integrase [Roseobacter sp. AzwK-3b]
          Length = 196

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 83/192 (43%), Gaps = 17/192 (8%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + LNE Q   ++          ++    R+  I+   +  GLR  E  +L   ++ D   
Sbjct: 13  QTLNEAQLRRVIQYC------RSRRHPTRDETIVLFSFYAGLRAKEIAALKRGDVFDKAG 66

Query: 187 TLR-------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
           ++R        Q KG + R V +   +R+A+ EY          +   PLF   +G   +
Sbjct: 67  SVREQFILSAAQSKGGRTRTVYVNQRLRRALAEYAAGLNL---SDPNRPLFESQKGGHFS 123

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
                +    + R +GL    ++H+ R ++ T L + G  +R +  + GH  +STTQ Y 
Sbjct: 124 ANTMCQLFLDIYRAVGL-KDASSHSGRRTYITRLANKGVGVRLLAELAGHSHISTTQRYI 182

Query: 300 NVNSKNGGDWMM 311
           +VN++   + + 
Sbjct: 183 DVNAEQLSEAVE 194


>gi|161520708|ref|YP_001584135.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|160344758|gb|ABX17843.1| integrase family protein [Burkholderia multivorans ATCC 17616]
          Length = 428

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 61/361 (16%), Positives = 122/361 (33%), Gaps = 59/361 (16%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           +I +   L   + WL         +  T Q+Y  +  + L++      + ++  ++    
Sbjct: 71  QIAATNDLDAVRAWLARFVD----TPTTFQNYRKEAERLLLWAVIACGKPLS--SLTHED 124

Query: 68  YTEIRAFI-------------SKRRTQK----------IGDRSLKRSLSGIKSFLKYLKK 104
               R F+              ++  +           +   S ++++  + +   +L +
Sbjct: 125 LVVYRQFLLAPAPADVWCANGGRKHPRGDPRWRPFYGPLSAASQRQAMVILNAMFSWLVQ 184

Query: 105 RKITTESNIL--NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA--IL 160
                 + +     R  + +  + R L       + D +      + +     + A  + 
Sbjct: 185 AGYLAGNPLALSRQRQRRPAPRITRHLGPPLWQAVKDAIAALPRDDARASFHADRARWVF 244

Query: 161 YLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
            LLY  GLRI+EA   T             D+  L + GKG + R+VP    +   +  Y
Sbjct: 245 TLLYLGGLRITEAAETTMGRFFCRRDASGRDRWWLDVTGKGGRRRLVPATDELMTELARY 304

Query: 214 YDLCPFD----LNLNIQLPLFRGIRGKPLNPGVFQRYIRQL---------------RRYL 254
                       + +  L L  G   +PL      R ++Q+                   
Sbjct: 305 RRAHGLAPLPVADEDTPLVLPFGQARRPLTRAALHRIVKQVFRHAAERLRAQGDAGAEQA 364

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            +    +AH LRHS  +H+     DLR ++  LGH  L+TT  Y + +         E +
Sbjct: 365 RVLEQASAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHADDDWRHRETEEKH 424

Query: 315 D 315
            
Sbjct: 425 R 425


>gi|30908748|gb|AAP37606.1| IntI [uncultured bacterium]
          Length = 161

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/93 (37%), Positives = 51/93 (54%)

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           A  E+     F        P       + ++P   Q+  ++  R   +P + + HTLRHS
Sbjct: 69  AAREWAWQYVFPSKSLSVDPRTDQKARQHVSPSSLQKVFKEALRKTRIPKNASPHTLRHS 128

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           FATHLL +G D+R+IQ +LGH  +STT IYT+V
Sbjct: 129 FATHLLQDGYDIRTIQDLLGHKEISTTMIYTHV 161


>gi|258652946|ref|YP_003202102.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258556171|gb|ACV79113.1| integrase family protein [Nakamurella multipartita DSM 44233]
          Length = 453

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/385 (14%), Positives = 116/385 (30%), Gaps = 93/385 (24%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           R+  L  +E     ++  L+ Y    R        + ++ +    I ++    ++A++++
Sbjct: 73  REVMLAYIEANHRAAESQLRKYRNQVRD-------HFDDTLGHTPIDRVDADAVQAWVAR 125

Query: 78  RRTQKIGDRS--------------------LKRSLS--GIKSFL-------KYLKKRKIT 108
            RT+++G  +                      R LS   I++         ++  +R + 
Sbjct: 126 MRTKQVGKSNSRARGTPVHPVRAARPPVVDQARLLSPKTIRNLHGLLSASMEWAVQRGLR 185

Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
            ++    +       SLPR       + L+ +      H+   +  R   +L  + G GL
Sbjct: 186 ADNPCRGV-------SLPRVEEVGDEMCLLTHEEFDLLHD--AMTPRYQLLLRTMVGTGL 236

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY------------YDL 216
           R  E  +L   ++      + ++      R       V                    DL
Sbjct: 237 RWGEITALQVMDVQQSSEMVALRVNKAWKRDGEHQHYVGSTKTSRSRRTVSVGETLGRDL 296

Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG--------------------- 255
                       LF   RG  +    F                                 
Sbjct: 297 LTLAEGRAPDELLFVNARGSQIRHNTFWETNWIAAVQAAQNPLEPKANAARTGRANATGR 356

Query: 256 --------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTN 300
                         L  +   H LRH+ A+ +++ G DL  +Q  LGH  ++TT   Y++
Sbjct: 357 RVAGNKGGRGNVKKLTKTPRIHDLRHTHASWMIAAGIDLMVLQRRLGHESVTTTIDRYSH 416

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKD 325
           +      +          P+ + + 
Sbjct: 417 LMPSQHIEAARVAELAARPAGSGRP 441


>gi|153808662|ref|ZP_01961330.1| hypothetical protein BACCAC_02961 [Bacteroides caccae ATCC 43185]
 gi|149128488|gb|EDM19706.1| hypothetical protein BACCAC_02961 [Bacteroides caccae ATCC 43185]
          Length = 397

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/321 (17%), Positives = 114/321 (35%), Gaps = 32/321 (9%)

Query: 10  VSFELLKER--------QNWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKI 58
           +S ELLK+         +++L     E     L + T Q++         F         
Sbjct: 89  ISLELLKDSIDKPVSNGRSFLTFFREEVANSSLKESTRQNHLSTLELLQEFKKEVQ---- 144

Query: 59  TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMR 117
                  L++  + +F +  +++     ++ + +  +K ++     +     +       
Sbjct: 145 ----FTDLTFEFVSSFDNYLQSKGYHLNTIAKHMKHLKRYVNVAINKDYMDVQKYAFRKY 200

Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177
            +K        L+ ++   L D  L     + +                GLR S+  +LT
Sbjct: 201 KIKSVEGRHSHLSPEELHKLEDLQLGGKYAKLQKTKDS----FLFCCYAGLRYSDFTNLT 256

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
             NI++ Q    +  K  K  I   LP     +L               L  F  ++   
Sbjct: 257 SANIVEFQQETWLIYKSVKTGIEVRLPL---YLLFEGKGIHILQRYKDDLNRFFKLKDN- 312

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
                  + +  L +   +    + HT RH+ AT L+ +G ++ ++Q +LGH  + TTQ+
Sbjct: 313 ---SNINKELNILGKLAEIDKRISFHTARHTNATLLIYSGANITTVQKLLGHKSVKTTQV 369

Query: 298 YTNV-NSKNGGDWMMEIYDQT 317
           Y N+ +     D    IY + 
Sbjct: 370 YANIMDITLVRDLEKAIYSKA 390


>gi|89147466|gb|ABD62593.1| integrase [uncultured bacterium]
          Length = 163

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/110 (37%), Positives = 49/110 (44%)

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G G       L      A  E+     F              R   L+  V QR ++   
Sbjct: 53  GAGYVEVPGALSWKYPNANREWSWQWVFPATRRYFHQDTGEWRRHHLHESVIQRNVKSAA 112

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           R   +    T HTLRHSFATHLL  G D+RSIQ +LGH  L TT IYT+V
Sbjct: 113 REAQISKRVTTHTLRHSFATHLLEAGYDIRSIQELLGHADLKTTMIYTHV 162


>gi|315034182|gb|EFT46114.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0027]
          Length = 331

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 106/289 (36%), Gaps = 26/289 (8%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T+  Y+     F+            I  I  ++   I  ++    + +   + ++   
Sbjct: 58  ARTINDYQKYMNNFIEVC--------NIVYISDITIDSIYEWLETMGSVQNSTKRIRYK- 108

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             + + L    +     E+    +  +K    +  A  ++    L+  + L     + + 
Sbjct: 109 -ALSAVLNRFFENGWI-ETKFWRVIKIKVDEKVKEAATQEDIDRLLRILDL-----SNYY 161

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKA 209
           + R++  + L++  G+RI+    L  ++I  ++  L + G   K  K+ I+P+   V + 
Sbjct: 162 EFRDACAVLLMFQTGIRINTLSQLENKHINFERKCLILDGSIMKNHKLSILPISDEVLQM 221

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG------VFQRYIRQLRRYLGLPLSTTAH 263
           I+                     I  +  +          +R + Q  +   +P +   H
Sbjct: 222 IVTLIKQNNLIRESKNVENSLIFITYEGTSIQKSDKSNAIRRRLGQYSKDFAIP-NINPH 280

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            LR  FAT+LL  G  +  I   LGH  L TT  Y  ++S    + + E
Sbjct: 281 GLRRGFATNLLKKGASVPLISKALGHADLETTSRYLYLDSTEAANELRE 329


>gi|295133368|ref|YP_003584044.1| transposase [Zunongwangia profunda SM-A87]
 gi|294981383|gb|ADF51848.1| putative transposase [Zunongwangia profunda SM-A87]
          Length = 400

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 117/297 (39%), Gaps = 36/297 (12%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEIRAFISKRRTQK-IGDRS 87
           L   T+++Y    +  L FL    E+KI    I  +Q++Y  I  F    R  K    RS
Sbjct: 125 LKPGTMKNYYTTEKYVLEFL----EKKINTNDIYLKQINYRFITDFEHFLRNYKPKTHRS 180

Query: 88  ------LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141
                 + + L  +K       K +   +       +L         L + +   L +  
Sbjct: 181 KPTNNGVMKHLERLKKLTNLALKMEWIDKDPFSKY-SLHYKKKERDYLLQDEIDILENLN 239

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----MDDQSTLRIQGKGDKI 197
           L   +            +       GL   +A SL  ++I      ++  ++ + K  K+
Sbjct: 240 LDRITLSRT------RDVFLFSCYSGLSYGDAKSLEAKHIVTGIDGNKWIVKEREKTGKL 293

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
             V +LP V+  + +Y           + LP++   +          +Y++ L +   + 
Sbjct: 294 FKVAMLPKVKAILKKYEKEANI---SGLLLPVYSNQKT--------NQYLKDLAKLAKIS 342

Query: 258 LSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
              T H  RH+FAT + LS G  + ++  +LGH +LSTTQIY+ V  +   D M +I
Sbjct: 343 KKLTFHVARHTFATTVTLSKGIPIETVSKLLGHTKLSTTQIYSRVLDQKLSDDMRKI 399


>gi|86130954|ref|ZP_01049553.1| phage integrase family protein [Dokdonia donghaensis MED134]
 gi|85818365|gb|EAQ39525.1| phage integrase family protein [Dokdonia donghaensis MED134]
          Length = 357

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 95/258 (36%), Gaps = 28/258 (10%)

Query: 49  FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT 108
           F  F   +K+ I  I          F+       +   +    ++  K  LK  K + I 
Sbjct: 110 FREFTGNDKLKIIDITPDLMQRFYDFLI--HKAGLSGETPHNYITRFKKLLKSAKNKGII 167

Query: 109 TESNILNMR--NLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165
            E    ++R  N  K ++L +  L+  +   L +    +        D    A ++  Y 
Sbjct: 168 KEVPTADIRFSNPNKGDTLSKEVLDIDEIKVLYNTYCGN--------DVVKRAFIFCCY- 218

Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
            GL ++E   L   +I  ++  ++ + K D      L       +          LN N+
Sbjct: 219 TGLGLAEIRKLKWGHIKKNRLVIQ-RSKTDSKIDNELSKQTLSLL------GKRKLNDNL 271

Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
              L      K ++     + ++   R   +    T +  RHSFA  LL NG +L+S+  
Sbjct: 272 VFDL------KGISDTAVNKNLKNWLRRADIEKKITFYCARHSFAVLLLLNGANLKSVAD 325

Query: 286 ILGHFRLSTTQIYT-NVN 302
            +GH    TT  Y  +V+
Sbjct: 326 AMGHSSTKTTLKYLNHVD 343


>gi|310287616|ref|YP_003938874.1| phage family integrase [Bifidobacterium bifidum S17]
 gi|311064529|ref|YP_003971254.1| integrase protein [Bifidobacterium bifidum PRL2010]
 gi|309251552|gb|ADO53300.1| phage family integrase [Bifidobacterium bifidum S17]
 gi|310866848|gb|ADP36217.1| Integrase protein [Bifidobacterium bifidum PRL2010]
          Length = 309

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 81/213 (38%), Gaps = 22/213 (10%)

Query: 103 KKRKITTESNILN--MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
               +          ++     +   + LN+ +   ++ ++ L       W       ++
Sbjct: 91  VDEGLIQRDPTRKAIIKGKPPCSKKTKYLNQFELHAVLADLELGKGPSWDW-------LI 143

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY-- 213
            L+   GLR SEAL LTP +      TL +    D       +P     SVRK  L++  
Sbjct: 144 LLVAKTGLRFSEALGLTPDDFDFVHQTLSVSKTWDYKNGGGFVPTKNASSVRKVQLDWQL 203

Query: 214 -YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
              L     ++    P+F   +            + +      +P+  + H LRH+ A+ 
Sbjct: 204 IMQLSTLLKDMPASDPIFVNGKVY---NSTANNILARHCERANVPV-ISIHGLRHTHASL 259

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           LL  G  + S+   LGH  ++TTQ  Y +V  +
Sbjct: 260 LLFAGVSIASVSKRLGHASMNTTQDTYLHVIRE 292


>gi|1877429|gb|AAC48867.1| integrase [Streptococcus pyogenes phage T12]
          Length = 362

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/320 (17%), Positives = 117/320 (36%), Gaps = 56/320 (17%)

Query: 9   IVSFELLKERQNWLQ---NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
            ++ + LKE +  +Q    L+ ER ++K             L  L       I    I++
Sbjct: 64  ALTDQWLKEYEKTVQGSTYLKTERNINKH-----------ILPKLDKVKIGDINPLLIQR 112

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           L+      + +  +          + L  +++ L    +      +  L +   K     
Sbjct: 113 LT----EEWCNDLKYGG-------KILGLVRNILNLAVRYGYINNNPALPITPPKIKRKR 161

Query: 126 PR---ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
                     Q    ++  L+  +   + I     A+  LL   G+R  E L+LT  ++ 
Sbjct: 162 KMNNNFYTLDQLKQFLE--LVEKTDNIEKI-----ALFRLLAFTGIRKGELLALTWDDLN 214

Query: 183 DDQSTLR-------------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
            +  ++              +       R++ L     + + E ++  P          +
Sbjct: 215 GNTLSINKAVTRTQVGLEIDVTKTKSSDRLISLDDETLEILQELHETFP------TSTLM 268

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F+   G  + P + ++++ Q+ + + LP   T H  RH+ A+ L  +G  L+ +Q  LGH
Sbjct: 269 FQSKSGGIMTPSLPRKWLLQIIKGIDLPQ-ITIHGFRHTHASLLFESGLSLKQVQHRLGH 327

Query: 290 FRLSTTQ-IYTNVNSKNGGD 308
             L TT  +YT++      D
Sbjct: 328 GDLQTTMNVYTHITQSAIDD 347


>gi|89147634|gb|ABD62676.1| integrase [uncultured bacterium]
          Length = 163

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/93 (36%), Positives = 50/93 (53%)

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           A  E+     F        P  R +R   ++    QR ++   R  G+    + H+LRHS
Sbjct: 70  ANREWAWQYVFPAVGLSADPRSRRVRRHHVHETGLQRALKDALRLAGIAKPASCHSLRHS 129

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           FAT LL +G D+R++Q +LGH  +STT IYT+V
Sbjct: 130 FATQLLESGYDIRTVQELLGHKDVSTTMIYTHV 162


>gi|84503259|ref|ZP_01001337.1| yld [Oceanicola batsensis HTCC2597]
 gi|84388313|gb|EAQ01263.1| yld [Oceanicola batsensis HTCC2597]
          Length = 371

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 61/305 (20%), Positives = 100/305 (32%), Gaps = 58/305 (19%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-----IGD 85
            S  TL++Y  D   F  +      E +        S   I  +++   +       +  
Sbjct: 65  ASDNTLKAYAKDWAHFARWCRMKGAETLPP------SPEMIGLYLADLASGAGPSPALSV 118

Query: 86  RSLKRSLSGI------KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
            ++ R LSG+      + F    K R I T      +  +K+ ++ P    +K+A+   D
Sbjct: 119 STIDRRLSGLAWNYAQRGFALDRKNRHIATV-----LAGIKRKHARPPV--QKEAILADD 171

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP--QNIMDDQSTLRIQGKGDKI 197
            + +  +        R+ AIL L Y  GLR SE +SL     +  D    + +  KG  +
Sbjct: 172 ILAMVATLPFDLRGLRDRAILLLGYAGGLRRSEIVSLDVHKDDTPDSGGWVEVFDKGTLL 231

Query: 198 --------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK------- 236
                         R          A+ ++      D       P+F G           
Sbjct: 232 TLNAKTGWREVEIGRGSKDQTCPVHALEQWLHFAKIDFG-----PIFVGTSRDGKKALET 286

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG------GDLRSIQSILGHF 290
            LN     R I++     G+            F+ H L  G       D R +Q  LGH 
Sbjct: 287 RLNDKHVARLIKRTVLDAGIRSDLPEKDRLALFSGHSLRAGLASSAEVDERYVQKHLGHA 346

Query: 291 RLSTT 295
               T
Sbjct: 347 SAEMT 351


>gi|115352465|ref|YP_774304.1| phage integrase family protein [Burkholderia ambifaria AMMD]
 gi|115282453|gb|ABI87970.1| phage integrase family protein [Burkholderia ambifaria AMMD]
          Length = 358

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 88/240 (36%), Gaps = 16/240 (6%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           I +LS   +  F   R  +     S  + L  ++    +  +R I        +R LK  
Sbjct: 98  IDELSTDRVE-FARVRHLESHAPVSANQWLKVLRLLCNWAVRRGILAAVPF-RVRALKVQ 155

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
                 L    A   +D +     +            + L+ G GLR SE ++   + + 
Sbjct: 156 KKPRAILPVAMARAWLDAIDAGEGNRAGV-----RTAVRLMLGLGLRESETITARWEWLD 210

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
             + T        +      +P+    +++Y        +     P+ +   G P   G 
Sbjct: 211 VGRQTYTPGRTKGREADPIPVPA---WLIDYLM-----ADWKAAGPILQKANGCPYPAGF 262

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
            +  +    R +G P   TAH LR +FAT L   G  ++SIQ  L H  L+TT  Y  V+
Sbjct: 263 TRSAMLAANRAVGAP-HITAHRLRGTFATLLSEAGVPVQSIQRALRHKNLTTTAAYLEVD 321


>gi|99078558|ref|YP_611816.1| phage integrase [Ruegeria sp. TM1040]
 gi|99035696|gb|ABF62554.1| phage integrase [Ruegeria sp. TM1040]
          Length = 411

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/297 (16%), Positives = 99/297 (33%), Gaps = 29/297 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + +    ER     T + Y      F++           + + + +     R  I++ 
Sbjct: 121 ERFFEAHAKER-CKPSTQKEYRRAIDLFIV---------PALGSFKVVDVE--RRDIAEL 168

Query: 79  RTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQAL 135
             + +       R+L  +       +   +  +  +   ++   ++     R L++ +  
Sbjct: 169 HHKFRDKPHQANRTLGVLSKMFNLAEIWGLRPDGSNPCRHVPKYREVKRE-RFLSQSELQ 227

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
            L    +L              A   LL   G R+ E  +L    I  +   L       
Sbjct: 228 RL--GQVLTEVEREGSETPHMVAAFRLLILTGCRLGEIQTLKWGYITANGMEL--PDSKT 283

Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255
             R +PL    R  +            +  +LP   G     L     Q   R++R   G
Sbjct: 284 GARRIPLPQPARDVLARLPRTPGHPYVIEGKLP---GQYATDL-----QHPWRRIRDRAG 335

Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           L      H LRH++A++ +S G  ++ +  +LGH ++ TT  Y ++          E
Sbjct: 336 L-CGVRIHDLRHTYASNAVSAGMPIQMVGRLLGHTQIQTTMRYAHLADDPVRQAAEE 391


>gi|323464881|gb|ADX77034.1| Tn554-related, transposase B [Staphylococcus pseudintermedius ED99]
          Length = 687

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 113/336 (33%), Gaps = 28/336 (8%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           N  +I S ++ +  + +L+N  I   ++  T + Y    R    F    ++ K T  ++ 
Sbjct: 217 NFEKIESIKMRELAKKYLKNRLITGDIAFATARFY---IRVLTRFFQNISKNKETRNSLN 273

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRS------LSGIKSFLKYLKKRKITTESNILNMRN 118
           +L    I A+I                      L  I+ FL  +  +         ++R 
Sbjct: 274 ELDRCHIEAYIEFLFEYAANKNLQSTKNFVREELKTIRRFLNDIITQNYAIA-PYQDIRF 332

Query: 119 LKKSNSLPR--ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           L     LP+    N  Q   + D VL         +      ++++ +  GLRIS+ L+L
Sbjct: 333 LIYPQDLPKHEKKNSSQIDYIPDFVLEQLFEHINDLHKDLIPVVWIAFKTGLRISDVLTL 392

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ---------L 227
               +        I     K  +      +   + +   +   D                
Sbjct: 393 QNNCLAKVNGKYSIITDIAKTFVKGHRIPIDNKLADIIAVLIADSKSKSTKDNNPNNYIF 452

Query: 228 PLFRGIRG-KPLNPGVFQRYIRQLRRYLGLP------LSTTAHTLRHSFATHLLSNGGDL 280
            +++G R   P    + + ++  L +   +            H  RH++A  LL+ G D+
Sbjct: 453 AIYKGKRKGMPFTQHMVRAHLNHLSKTKNIIDEQGEIFHFKTHQFRHTYAVKLLNGGADI 512

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            +IQ +L H     T  Y  +           + DQ
Sbjct: 513 LTIQELLAHSSPEMTLRYAKLLDDTKRKAFESVIDQ 548


>gi|160887306|ref|ZP_02068309.1| hypothetical protein BACOVA_05324 [Bacteroides ovatus ATCC 8483]
 gi|156107717|gb|EDO09462.1| hypothetical protein BACOVA_05324 [Bacteroides ovatus ATCC 8483]
          Length = 308

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/269 (20%), Positives = 100/269 (37%), Gaps = 32/269 (11%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           +L   +++ F  ++    +  +S+K  L  +K  LK+  K                    
Sbjct: 47  ELEENKVQEFALQKINNGLSKKSIKDILIVLKMILKFGVKHGYLDYKEWE---------- 96

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI---LYLLYGCGLRISEALSLTPQNI 181
             R   E +   L    + H      +I    +     +Y+    GLRI E  +LT  +I
Sbjct: 97  -IRFPTEDEKQHLEVLSISHQKRIMSFIQEHFTFKNLGIYICLSTGLRIGEVCALTWDDI 155

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR---------- 231
             +   + I+   ++I I+       + I+           + I   L R          
Sbjct: 156 NIELGIISIKRTIERIYIIDGEKRHTELIINTPKTKNSIREIPITKELIRILKPLKKIVN 215

Query: 232 ------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
                     KP  P  ++ Y ++L + L +P     H LRHSFAT  + +  D +++  
Sbjct: 216 GNYYILTNEEKPTEPRTYRNYYKKLMKDLNIP-ELKFHGLRHSFATRCIESNCDYKTVSV 274

Query: 286 ILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           ILGH  +STT  +Y + N +     +  +
Sbjct: 275 ILGHSNISTTLDLYVHPNMEQKKKCIDRM 303


>gi|281426314|ref|ZP_06257227.1| putative integrase [Prevotella oris F0302]
 gi|281399556|gb|EFB30387.1| putative integrase [Prevotella oris F0302]
          Length = 422

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/280 (17%), Positives = 109/280 (38%), Gaps = 26/280 (9%)

Query: 47  LIFLAFYTEEKITIQTIR--QLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLK 103
              +  Y  E++ ++ IR  QL+Y  I       ++++ +   +++  +  ++  +   +
Sbjct: 141 AQLIESYLCERLGMEDIRYSQLNYGFIEGMDFYLKSERNLSLATIQIVVIFLRKLIGIGQ 200

Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163
           ++K       ++ +  ++ +   R L  ++   ++   ++    E          +    
Sbjct: 201 QKKYIRIDPFIDYKA-EQPHRTRRYLTTEELQRVLQTPIIDKQFERA------RQLFLFC 253

Query: 164 YGCGLRISEALSLTPQNIM---DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPF 219
              GL   +   L P++I+   D    +RI + K D   I+PLLP   + +  Y      
Sbjct: 254 TFTGLARVDMQRLKPKHIIRNADGTEEIRIKRQKTDVEAIIPLLPIAGQILSIYI----- 308

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGG 278
             +      +F       L           + +   +    T H  RH+F+T   LSNG 
Sbjct: 309 -KDKKADELIFPN-----LTVRKASFACVNIGQICRIEKGLTFHMARHTFSTTICLSNGI 362

Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
            + ++  +LGH  + TTQIY  +      + M  +  + H
Sbjct: 363 SMETLSKMLGHSNIGTTQIYGKITDHKIQEDMTALTHREH 402


>gi|121535734|ref|ZP_01667537.1| phage integrase family protein [Thermosinus carboxydivorans Nor1]
 gi|121305699|gb|EAX46638.1| phage integrase family protein [Thermosinus carboxydivorans Nor1]
          Length = 393

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/313 (14%), Positives = 97/313 (30%), Gaps = 40/313 (12%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           +  T   YE            +    I    + +L    ++  ++         R+++  
Sbjct: 89  APSTYDWYER-------ICRVHLIPAIGHLRLSRLQQMAVQQLLNSLVDAGKSARTVQAV 141

Query: 92  LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
            S +   L+  +K  +       ++   +      R L   +   L+             
Sbjct: 142 HSVLAMALRVARKHGLLRTLPTDDVAVPQVRKQDKRPLTPDEWDALL---------TAAQ 192

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL--------- 202
                 A L + +  GLR  E L L   +I  D+  + ++      R   +         
Sbjct: 193 TAPDIFAALVVEWATGLRRGELLGLMWDDIDFDRCLINVRRAVQIRRGGCVLADPKTEAT 252

Query: 203 ---------LPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLR 251
                    +  V +A       C        Q    +F    G   +P  + +   ++ 
Sbjct: 253 KRVLPVPKEVMQVLRAHRARQMQCRLAAGPAWQDCGLVFPTSGGTLYDPRNWSKRFARIA 312

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST-TQIYTNVNSKNGGDWM 310
           +  GL +    H LRH   + +++ G  ++  Q  LGH  +     +Y +  +  G D +
Sbjct: 313 KAAGLDIGV--HHLRHDLTSRIVAAGAPVKEAQYRLGHATVKMLLDVYAHRVT-GGQDAI 369

Query: 311 MEIYDQTHPSITQ 323
            E    + P   +
Sbjct: 370 TETIRASAPQTLK 382


>gi|89147456|gb|ABD62588.1| integrase [uncultured bacterium]
          Length = 164

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 59/163 (36%), Gaps = 38/163 (23%)

Query: 177 TPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILE----------------------- 212
             +++      + I+  KG K R   L  S+ + +                         
Sbjct: 1   RVKDVDFANGVINIREAKGGKDRCQTLPKSLEEGLQRQMQSARLLFEEDEAEGGARVSVD 60

Query: 213 --------------YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
                         +     F        P     +   +  G   ++++      G+  
Sbjct: 61  AALDLKSGGKFSRSWEWFWVFPAARRGIDPRDGEEKRYHIMEGAASKWLKNAVGKAGIEK 120

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
             TAH LRHS+ATHLL  G DLR+IQ  LGH  + TT+IYT+V
Sbjct: 121 RVTAHVLRHSYATHLLQKGVDLRTIQEALGHSSVKTTEIYTHV 163


>gi|89893587|ref|YP_517074.1| hypothetical protein DSY0841 [Desulfitobacterium hafniense Y51]
 gi|89333035|dbj|BAE82630.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 187

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 68/170 (40%), Gaps = 11/170 (6%)

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-----GKGDKIRIVPLLP 204
           K  + R+  +  L    GLRIS+ L L   ++++++  ++ +      K  K +  P+  
Sbjct: 21  KATNMRDYVLFVLGINTGLRISDLLRLKQTDVINEKGKIKDRIEIREKKTGKSKNFPISD 80

Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           +  KA+ EY    P       + PLF   +G  P+        +      +G+      H
Sbjct: 81  TAAKALKEYLPPGPP-----AEAPLFPSRKGSGPITRQQAHYILNVAAGQVGIKERIGTH 135

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           TLR +F  H    G  + ++Q I  H     T  Y  +   +  +  M +
Sbjct: 136 TLRKTFGYHARLAGYPIETLQKIFNHSSQQITLSYIGITQDDTDEVYMNL 185


>gi|317501286|ref|ZP_07959489.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316897250|gb|EFV19318.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 431

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/358 (14%), Positives = 120/358 (33%), Gaps = 71/358 (19%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR--- 78
           L ++  E  L   TL +       +L  +    +  I  + ++ ++   ++AF+      
Sbjct: 68  LLDMWAEEELKTGTLSN--GTVENYLGAIRCIKKHPIADRKLKTVTAEHLQAFLDLLTFG 125

Query: 79  -------RTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALN 130
                    +      +    + ++   ++    +++ + + +  ++  K++  +    +
Sbjct: 126 GEFPDGKVKKGYSKDYIHSFSAVLQQSFRFAVFPKQLISFNPMQYIKLKKQAEEV-DLFS 184

Query: 131 EKQALT----LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + +       +            +  +      + + Y  GLRI E   LT Q+I  ++ 
Sbjct: 185 DDEVEEGTQPISHEDYERLIQYLEKKNPPAILPIQIAYYAGLRIGETCGLTWQDINLEEQ 244

Query: 187 TLRIQG----------------KGDKIRIVPLLPSVRKAI-----------LEYYDLCPF 219
            L I+                 K  K+RIV    ++ + +           ++Y +L   
Sbjct: 245 CLTIKRSIRYDGMKHKNIIGPTKRKKVRIVDFGDTLTEILKAARKEQLKNRMQYGELYHR 304

Query: 220 DLNLNIQLPLFRGIRGKPLN-------------------------PGVFQRYIRQLRRYL 254
           +    + +          L+                         P       R + + L
Sbjct: 305 NYYKEVHVKNRVYYEYYHLDGTQEVPTDYKEISFVCLRPDGSLELPSTLSIVCRSVAKKL 364

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMM 311
                   H LRH++ ++LLSNG   + +Q +LGH  +STT  IY +   K   D   
Sbjct: 365 EGFEDFHFHQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTTMNIYAHSTRKAKRDSAR 422


>gi|256423766|ref|YP_003124419.1| integrase family protein [Chitinophaga pinensis DSM 2588]
 gi|256038674|gb|ACU62218.1| integrase family protein [Chitinophaga pinensis DSM 2588]
          Length = 287

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 59/295 (20%), Positives = 112/295 (37%), Gaps = 18/295 (6%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           +++  +  T  SY  +   FL                    Y+++ ++I   R +     
Sbjct: 7   LQQHYTASTAASYLREINHFLSAYPEAAG----------AVYSDLMSYIGVLRHRYRNSY 56

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           +L R +S IK +  YL +     +    N+R   +         +         VLL   
Sbjct: 57  TLHRIVSSIKVYYDYLCQIGARLDHPARNIRL--RDKRSRDIQLQDLFSGAELEVLLERE 114

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG-DKIRIVPLLPS 205
                +  RN  ++ LL   GL + E  +L+  +I+ ++ ++ I+G      R +PL P 
Sbjct: 115 ERYSVLALRNKVLISLLVYQGLTVGELSALSVSDILLEKGSVYIKGTAVTNRRELPLKPL 174

Query: 206 VRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
               +  Y       L   +    L  G RGK +      ++++++ R L      +A  
Sbjct: 175 QIDWLTSYLSEVHPQLLRGSESDLLLVGHRGKGMPGTEISKHVKRIYRGLYRGREVSAQR 234

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
           +R S   +L S G D+  +Q   GH   S+T+ Y     ++    +    +  HP
Sbjct: 235 IRQSVIANLFSQGHDIGVVQQFAGHKYPSSTERY----RQDDVYRLQSAIELYHP 285


>gi|116669557|ref|YP_830490.1| phage integrase family protein [Arthrobacter sp. FB24]
 gi|116609666|gb|ABK02390.1| phage integrase family protein [Arthrobacter sp. FB24]
          Length = 400

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 91/232 (39%), Gaps = 19/232 (8%)

Query: 82  KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN--------LKKSNSLPR--ALNE 131
           +    ++  + +  K F  +  +       N   +R          ++  +L R   L +
Sbjct: 130 RYSPSTINHTTTVCKEFYAFQLRMGEGPIVNPFELRRGRSHAHHDPQREFALVRRQPLRQ 189

Query: 132 KQALTLVDNVLLHTSHE--TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           ++A  +  ++     ++   +    R+ A++      G R SE L +T   +      + 
Sbjct: 190 REAHRVPRSIPDGKFNDLFRRLRSNRDRALVAFYVSSGARASELLGITGDRVNVGDQLIG 249

Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYI 247
           +  KG +++ +P  P     +  Y              P++  +R   +PL+       +
Sbjct: 250 VYRKGGQLQWLPAAPDAFVWLRLYQLEGGV---AGPDEPVWLTLRGEPRPLSYEAMCAVL 306

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           R+    LG   + T H LRH+FA   L  G  L  +Q +LGH  L+TT +Y 
Sbjct: 307 RRCNDLLG--SNWTLHDLRHTFAIRALEGGMGLHEVQQLLGHQSLTTTTVYA 356


>gi|330874832|gb|EGH08981.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 118

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 6/116 (5%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
              +L  L +E+GLS  T  SY  D   F  +L            +       I   ++ 
Sbjct: 9   IDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERN------VDLPSAGREVILDHLAW 62

Query: 78  RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           R       RS  R LSG + F +YL + K+ +    L +   +    LP++L+E  
Sbjct: 63  RVENAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEAD 118


>gi|209548773|ref|YP_002280690.1| integrase family protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209534529|gb|ACI54464.1| integrase family protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 368

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/316 (16%), Positives = 114/316 (36%), Gaps = 43/316 (13%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L +  +++L N  +        L+SYE   +  L +   +  EK ++  +R +   E   
Sbjct: 76  LKEVFKDYLDNHAVN-------LRSYES-VKILLRYWEEHWGEKASVADVRNVIEQE--K 125

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
           F +    + +   S+ R+L   ++ ++   KR + +    + +   ++     R L+ ++
Sbjct: 126 FRTALFAKGLAINSVNRTLEAGRAAIRRAFKRNVISAMPFVEILPYERDKPKGRPLSVEE 185

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-- 191
              L      H               + L+ G G R     +LT + I  +   + +   
Sbjct: 186 IGKLYAECADHM-----------RLFMILMLGTGARNEAICTLTWEQIDFEAGLIYLNPP 234

Query: 192 -GKGDKIRIV--PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
             K    R     + P VR+ + ++ D     L+       FRG            + I 
Sbjct: 235 GRKQTSKRRPVVRMTPFVREQLSKFNDREGRVLS-------FRGKSF-----RTAHQGIG 282

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL--STTQIYTNVNS--- 303
           +      L    T ++ RH+ A  L   G     + + LGH     + T++Y + +    
Sbjct: 283 KAVGRAKLKGKVTPYSFRHTVARWLRKEGVSPWEVGAQLGHKMPGYNITEMYASASPDYL 342

Query: 304 KNGGDWMMEIYDQTHP 319
           +   + + ++     P
Sbjct: 343 EKAAEAIEKLLRTAIP 358


>gi|217961405|ref|YP_002339973.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus cereus AH187]
 gi|229140651|ref|ZP_04269202.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST26]
 gi|217065831|gb|ACJ80081.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus cereus AH187]
 gi|228642824|gb|EEK99104.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST26]
          Length = 376

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 101/297 (34%), Gaps = 37/297 (12%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             TL  Y+   R            +   + +  +    +  F  K   + +  + +    
Sbjct: 80  PSTLYQYKRILRS-------RVMPEFADKRLSDIKPLTVHNFHQKLLKEGLTTKYISSVD 132

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +K  L    + ++   +     +  K       +    QA+  ++            I
Sbjct: 133 VMLKQILDKGVELEMINSNPAKKAKRPKVKKKAQASWTIDQAMKFMEY---------AKI 183

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---------------GKGDKI 197
                    L    G+RI E L+L   +I  D   + +Q                     
Sbjct: 184 KGSYYIAFVLALHTGMRIGEVLALQWDDINFDNKAIHVQRTLTLVDGKYELGETKTEASN 243

Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           R++P+   + + +L+Y +        N    L      K ++P   +  ++ L   + +P
Sbjct: 244 RVIPMTEELMEELLDYQNHK----KENSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVP 299

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
                H +R +F T L+ +G + + +  +LGH  +STT  IYT+   +   +   ++
Sbjct: 300 Y-IRFHDIRRTFTTILIDSGANAKVVAKLLGHTNVSTTLNIYTDTYEERQIEATEKL 355


>gi|332343291|gb|AEE56625.1| phage integrase [Escherichia coli UMNK88]
          Length = 426

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/320 (12%), Positives = 100/320 (31%), Gaps = 53/320 (16%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT-EEKITIQTIRQLSYTEIRAFISK 77
           + +L   E E  ++K +L +Y    +  L  +        I  + + ++    +  +   
Sbjct: 86  EKFLALKETE--VAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLTGYQIP 143

Query: 78  RRTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +             ++   ++ + +  ++        ++    +  LK+S ++P  L+ +
Sbjct: 144 KSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPEPLSRE 203

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + + L+D      +            +  +    G+R  E  +L  ++I     T+ I+ 
Sbjct: 204 EFIRLIDACRNQQAKN----------LWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRR 253

Query: 193 KGDKIRIVPLLPSV--------------------------RKAILEYYDLCPFDLNLNIQ 226
              K R                                  ++ I++ +            
Sbjct: 254 NLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKC 313

Query: 227 LPLF-------RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
             +F           G        ++      +  GL    +  + RH++A   L+ G +
Sbjct: 314 TFVFQPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQS-RHTYACWSLTAGAN 372

Query: 280 LRSIQSILGHFRLSTT-QIY 298
              I + +GH       Q+Y
Sbjct: 373 PAFIANQMGHADAQMVFQVY 392


>gi|332885104|gb|EGK05356.1| hypothetical protein HMPREF9456_02855 [Dysgonomonas mossii DSM
           22836]
          Length = 334

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/271 (18%), Positives = 109/271 (40%), Gaps = 12/271 (4%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSL 92
            T+ +Y      F+  L+ Y  E+    ++ +L+   +  +I     +     +++    
Sbjct: 31  HTVANYVS----FINKLSLYLGEQRESFSLYELNKEWVGGYIEWLHERHPDKPQTVDFYF 86

Query: 93  SGIKSFLKYLKKRKITTE----SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            G++S      K K   +    +  + +  +KK  +  RAL+ K    L+ N  L +S  
Sbjct: 87  RGLRSLFNATIKTKEYADLNIINPFIGL-YVKKGLTPKRALSVKMLSKLL-NPELGSSLT 144

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208
               ++ +  ++ L Y  G+   +  +L+   I D       + K  +   + +    ++
Sbjct: 145 DSQRESLDILLVSL-YCRGMVFHDIYNLSWDMINDFWQIEYRRSKTGQSIRLTVPKEAQE 203

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            +L Y       +   ++    + +  +        R+   + + L LP   T + +RHS
Sbjct: 204 IMLRYKKNNNLYIFPFLREKNNKTVLCEKSALRRINRHALIIGQMLHLPGKLTTYVMRHS 263

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
           +AT +L  G  +  I   +GH  + TTQIY 
Sbjct: 264 WATLMLEAGKSVEIISQCMGHTSIRTTQIYL 294


>gi|315167303|gb|EFU11320.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX1341]
          Length = 377

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 85/242 (35%), Gaps = 35/242 (14%)

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT--SHETKWIDA 154
             L Y   + I   + +  +   KK  +     NE +    ++   L    +   + ++ 
Sbjct: 140 KMLHYAVAQDIIDINPMQYVVMPKKDKT-----NETKKKQFLELSELKDFLAEAKETLNF 194

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK---------------GDKIRI 199
           ++  I  +L   G+R  E  +LT ++I      L +                      R 
Sbjct: 195 QDYLIFRVLAFTGIRKGELYALTWEDINISYKQLTVNKTLTRIGKEYIISTPKTKASNRT 254

Query: 200 VPLLPSVRKAILEYYDLCPFDL-------NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           + L  +    ++ +      +L         N +  +F         P      +     
Sbjct: 255 IGLDDTTVSELIIWKKHQKQELLKYGFKTKSNDKQLIFHRKNNTLHYPEYINFLLS---- 310

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMM 311
              +  S + H+ RH+ A+ L  +G  ++ +Q  LGH  ++TT  IYT+V   +    + 
Sbjct: 311 -SEMKTSLSPHSFRHTHASLLFESGATIKDVQKRLGHTNVNTTMDIYTHVTKSSERKAID 369

Query: 312 EI 313
           ++
Sbjct: 370 KL 371


>gi|304384465|ref|ZP_07366866.1| integrase [Prevotella marshii DSM 16973]
 gi|304334444|gb|EFM00736.1| integrase [Prevotella marshii DSM 16973]
          Length = 409

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 109/287 (37%), Gaps = 33/287 (11%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD-----RS 87
           + ++ +Y    ++   F+       ++     QL+     +FI + +T  +G+      +
Sbjct: 131 EESMSAYHSTRKRLQEFIQKKYH--VSDLAFSQLT----ESFIYELQTFCLGELGHQQST 184

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             R  + +K+  +   +  +        +   +     P+AL+++    L          
Sbjct: 185 FFRVAADLKTVCRLAYREGLADTLLFDKVHIERGDKKAPKALDQEALNKLKAICF----D 240

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRI---QGKGDKIRIVPLL 203
           E +        +       G    + + L+ ++ + DD  +L +   + K   +  + LL
Sbjct: 241 ELEEEMETARDVFLFACYTGAAYCDLMELSKKHLVRDDAGSLWLKFSRQKTGVLCRIKLL 300

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
           P   + I + Y      L   I+ P              +Q  ++ LR   G+    T+H
Sbjct: 301 PETVRLIEKMYSDEREALLPFIKYP-------------TYQSCLKALRLRAGISFPFTSH 347

Query: 264 TLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           T RH+FAT + L  G  + ++  +LGH  +S T+ Y  V  +   + 
Sbjct: 348 TARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQKLFEE 394


>gi|289642394|ref|ZP_06474541.1| integrase family protein [Frankia symbiont of Datisca glomerata]
 gi|289507826|gb|EFD28778.1| integrase family protein [Frankia symbiont of Datisca glomerata]
          Length = 267

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 80/240 (33%), Gaps = 32/240 (13%)

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +++ L    +  +   +    ++         R L+      L   +             
Sbjct: 2   LRNALADAHRLDLVPRNVAKAIKGPSVPLRRVRTLHVDDVRALSRAMHDDPYGP------ 55

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---------------GKGDKIRI 199
               I       GL   E L L   +I  D   L ++                     R 
Sbjct: 56  ----IFICGLMLGLWRGEILGLRWADIDFDAGALHVRRTLQRANGKLMFTPAKTVRSHRT 111

Query: 200 VPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
           +PL  S+ + + E+       +     +      +F    G PL+P    R    +R   
Sbjct: 112 LPLSGSLVEILKEHRRSQEGAMATAGPDWIDHDLVFASAIGTPLDPRNVNRRFTAIRTAA 171

Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
           GLP     H LRH+FAT L++ G  +R I  +LGH  ++ T   Y +V  +   D +  +
Sbjct: 172 GLPW-VRPHDLRHAFATLLVAEGVPMRVIMELLGHSTINLTMNTYAHVLPEAQEDAVARL 230


>gi|270292637|ref|ZP_06198848.1| integrase/recombinase, phage integrase family [Streptococcus sp.
           M143]
 gi|270278616|gb|EFA24462.1| integrase/recombinase, phage integrase family [Streptococcus sp.
           M143]
          Length = 219

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 80/187 (42%), Gaps = 21/187 (11%)

Query: 18  RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
            Q ++   ++E G S  T++ Y+         +          +++ QL+  ++R++++ 
Sbjct: 47  LQLFITAKQVE-GCSAKTIRYYQRTIENLFHDIK---------ESVTQLTTDDLRSYLAN 96

Query: 78  RRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
            +++K     +L      + SF  +L++ +   ++ I  ++ +K   ++     ++    
Sbjct: 97  YQSEKDCSKANLDNIRRILSSFFAWLEQEEYIIKNPIRRIKKIKTEQTVKETYTDEHLEI 156

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           + DN            + R+ A++ LL   G+R+ E + L   +I  +     + GKG K
Sbjct: 157 MRDNCE----------NLRDLAMIDLLASTGMRVGELVQLNRSDIDFENRECVVFGKGKK 206

Query: 197 IRIVPLL 203
                L+
Sbjct: 207 KDPYILM 213


>gi|242243126|ref|ZP_04797571.1| bacteriophage integrase [Staphylococcus epidermidis W23144]
 gi|242233474|gb|EES35786.1| bacteriophage integrase [Staphylococcus epidermidis W23144]
          Length = 348

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/309 (17%), Positives = 121/309 (39%), Gaps = 33/309 (10%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
           L K   +W + + I+  +S  T ++Y     +   +           + + +++  E + 
Sbjct: 55  LTKYLNDW-KEIYIKEYVSSKTYKNYCRYCEKVEYYFKD--------KPLDKITRNEYQL 105

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR----NLKKSNSLPRAL 129
           F++  +   +    L R    I   +       + T+    N++             +  
Sbjct: 106 FLTNFKDN-LSQDQLSRLNKFITKAISTAIFDGLITKDFTFNVKVESSKPPIKQESDKFF 164

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           N  +   + D  L  T + +         ++ L+   G R S+ ++LT ++I +    + 
Sbjct: 165 NIDELKKIKDYYLSKTKYYSASTH-----LILLMIETGGRFSDCINLTRKDINELNLEIF 219

Query: 190 IQGKGDK--IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           + G  +K   R V +  ++ + +L+Y +        +I+  +F    GK +      + I
Sbjct: 220 LNGTKNKSAPRYVSVSKTLIQILLKYIENHT----SSIEGYVFINN-GKQITNSSVNKSI 274

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           R+    L +  + T+H  RH+ A+ L+  G ++  I   LGH  +        V  K+ G
Sbjct: 275 REACSKLNIHRNLTSHAFRHTHASMLIHEGLNIYYISKRLGHSSID-------VTLKDYG 327

Query: 308 DWMMEIYDQ 316
             + E Y+Q
Sbjct: 328 HLLKETYEQ 336


>gi|189462830|ref|ZP_03011615.1| hypothetical protein BACCOP_03529 [Bacteroides coprocola DSM 17136]
 gi|189430446|gb|EDU99430.1| hypothetical protein BACCOP_03529 [Bacteroides coprocola DSM 17136]
          Length = 406

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/264 (20%), Positives = 105/264 (39%), Gaps = 18/264 (6%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT--TESNILNMRNL 119
           T   +  T  R F    R++   D +L      +++      + KI    ++  +  +  
Sbjct: 148 TFSHIDVTFCRKFEDWMRSKGNKDTTLSYQFRTLRAAFNKAIEAKIVAREKNPFIKYKLS 207

Query: 120 K-KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG-LRISEALSLT 177
              + ++ RAL++K  + +++   +  S   +        +    Y CG +   +  +LT
Sbjct: 208 HFNTKTIKRALSKKDIMKIINANCIGKSELRQLTHD----LFSFSYLCGGISFVDIANLT 263

Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-------DLCPFDLNLNIQLPLF 230
           P+NI+ D   +  + K      +PL    +K I +Y         L P         P+ 
Sbjct: 264 PKNIV-DGRLIYQRQKTHGNINLPLSDKAQKIIDKYIDYQKQAIYLFPILHGKKHITPMQ 322

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290
           +  R   +      + ++   + L +    T +  RHSFAT L  +G ++  I   LGH 
Sbjct: 323 KSNRVHKVCHQ-INQELKIFAKELNIKSEVTTYVARHSFATILKKSGVNIGIISEALGHQ 381

Query: 291 RLSTTQIYT-NVNSKNGGDWMMEI 313
            + TTQIY    +++   + M  +
Sbjct: 382 DIKTTQIYLSRFDNEQVDEAMKNL 405


>gi|330988980|gb|EGH87083.1| hypothetical protein PLA107_28423 [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 484

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 123/337 (36%), Gaps = 52/337 (15%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           M    LPE+    +L               L   T++ Y   T+ ++ F       + T 
Sbjct: 1   MNTMTLPELTQEYILTH------------DLRPDTVKIYWAATKSYVRFFGDRLASETTH 48

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           + +     +E+         ++I  RS       +++  +Y  +  +      L +  LK
Sbjct: 49  RDMLDWRRSEL---------ERISKRSWNTYSGHLRTVYRYAMEHGLVD----LKVNPLK 95

Query: 121 KSNSLP-----RALNEKQALT-------LVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
           ++  +P     + +N    +        LV       +           A+  + Y  G+
Sbjct: 96  ETRVIPAKRPKKTVNTDAIVRARNWLNILVQEERATGNRTEITPAWFWLAVFEMFYYTGI 155

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP-------LLPSVRKAILEYYDLCPFDL 221
           R++  + L   +I   Q  +R++G+ +K            L+P +++ +     +     
Sbjct: 156 RLNAMICLRYADIDLGQRLIRVRGETEKTHREFMIPIPDGLMPHLKRLMDIAQRVGFDPA 215

Query: 222 NLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGD 279
           +    +  F G   +P +N    +   ++L    G+    T H  RH+ A+ ++     +
Sbjct: 216 DQIFNVNRFSGHYSRPQMNADQVEAMYKKLTAMTGV--RMTPHRFRHTIASEMMRQPERN 273

Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +   +++L H  ++TT  Y     +   D M E+ ++
Sbjct: 274 IHITKNLLNHSNIATTMEYI----EPDYDVMREVMNE 306


>gi|268610702|ref|ZP_06144429.1| integrase [Ruminococcus flavefaciens FD-1]
          Length = 415

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/345 (14%), Positives = 124/345 (35%), Gaps = 52/345 (15%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ++    P+  +  +++  +   + L+ + G+   T  +Y    R  L+      +E  + 
Sbjct: 73  LDTQIDPQQKNITVMELVE---RYLKTKTGIKPQTKSNY-NFVRNILL------KEDFSG 122

Query: 61  QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI-LNMRNL 119
           + I  +  ++ + F+ K +    G  S+K     ++   +      I  ++     +  +
Sbjct: 123 RKIGTVKTSDAKLFLIKLQADGRGYSSVKTVRGVLRPAFQMAVDDDIIVKNPFGFQLAGV 182

Query: 120 KKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
             ++S  R A+ + Q    +  V             +    +++L+  G+RISE   LT 
Sbjct: 183 VVNDSKTREAITKDQMRKFLRFV------HDDNTYCKYYEAVFILFHTGMRISEFCGLTL 236

Query: 179 QNIMDDQSTLRI----------------QGKGDKIRIVPLLPSVRKAILEYYD------- 215
           ++I      + I                       R +P+   V +      +       
Sbjct: 237 KDIDLKNRIVNIDHQLQRTSDMEYVIQTTKTNAGKRQIPITEEVARCFQAIIEDRGKPKK 296

Query: 216 ------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
                  C F    +  +PL         N  +  +Y    R  +    + T H  RH++
Sbjct: 297 EKFVDGYCGFLYFDDEGMPLVALHWEHRFNR-MVSKYNEIYRVQM---PNITPHVCRHTY 352

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
            ++    G + +++Q ++GH  +  T  +YT++  ++    +  +
Sbjct: 353 CSNQAKAGMNPKTLQYLMGHSEIGVTLDVYTHLGLEDAAAELHRM 397


>gi|89147434|gb|ABD62577.1| integrase [uncultured bacterium]
          Length = 163

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/134 (32%), Positives = 57/134 (42%), Gaps = 6/134 (4%)

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227
           LR   A   T  +   +    R+           L      A  E+     F  +     
Sbjct: 35  LRRHLANVKTLHDRDLEAGFGRV------ALPNNLKKKYPNADTEWGWQYVFPSSKRSPE 88

Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287
                IR    +P   QR I+   R   L    T HTLRHSFATHL+ +G D+R+IQ +L
Sbjct: 89  RESGIIRRFYTSPKTLQRAIKGAARAARLAKPVTCHTLRHSFATHLIEDGYDIRTIQELL 148

Query: 288 GHFRLSTTQIYTNV 301
           GH  + TT IYT+V
Sbjct: 149 GHTDVRTTMIYTHV 162


>gi|169350753|ref|ZP_02867691.1| hypothetical protein CLOSPI_01526 [Clostridium spiroforme DSM 1552]
 gi|169292616|gb|EDS74749.1| hypothetical protein CLOSPI_01526 [Clostridium spiroforme DSM 1552]
          Length = 318

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 104/265 (39%), Gaps = 26/265 (9%)

Query: 53  YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112
           + E  I    I++L+ T  +  ++    +     +L      +K  +       + +   
Sbjct: 51  WVERLIPDLKIKELTRTAYQQLLNDYAKEHERQTTLDFHHQ-LKGAILDAIDEGLLSRDP 109

Query: 113 ILNM----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
                   +  K      + LN+ +  TL+ N+ L  +    W        + L+   G+
Sbjct: 110 TRKAIIKGKTPKVKK--IKFLNQFELHTLLANLDLKETVNWDW-------FILLVAKTGM 160

Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEYYDLCPFD--- 220
           R SEAL++TP++    +  L I    D       LP     SVRK  +++  +  F    
Sbjct: 161 RFSEALAITPEDFDFSRQMLSISKTWDYKGEGGFLPTKNKSSVRKIQIDWQIVVKFSELI 220

Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280
             L    P+F G     +        + +  +  G+ +  + H LRH+ A+ LL  G  +
Sbjct: 221 KTLPKDKPIFVG--ENKIYNSTVNDVLTRHCKECGISI-ISIHGLRHTHASLLLFAGVSI 277

Query: 281 RSIQSILGHFRLSTTQ-IYTNVNSK 304
            S+   LGH  ++TTQ  Y ++  +
Sbjct: 278 ASVARRLGHASMTTTQKTYLHIIQE 302


>gi|153213639|ref|ZP_01948912.1| Int [Vibrio cholerae 1587]
 gi|124115838|gb|EAY34658.1| Int [Vibrio cholerae 1587]
          Length = 345

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 59/295 (20%), Positives = 112/295 (37%), Gaps = 29/295 (9%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-----LSYTEIRAFISKRRT--- 80
           R LS+L    ++            Y +  +TI+ +        +  +  AF + R +   
Sbjct: 62  RRLSELLETWWQVHGHTIKSGKVVYRKTALTIKELGDPIASTFTSKQYLAFRANRVSHFN 121

Query: 81  ---QKIGDRSLKRSLSGIKSFL-KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136
              + +        L+ +     + +K ++    + + ++  +K +      L++     
Sbjct: 122 KDNKSLSPTYQNFQLNLLSGMFSRLIKYKQWNLPNPLDDIEPIKVNQRALAYLDKADIQP 181

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
            +  +    S            I  +    G RISEALSL    I + + T  ++ KG +
Sbjct: 182 FLQRLGGFESEGRSVSIPEIVLIAKICLATGARISEALSLERSQISEFKLTF-VETKGKR 240

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
           IR VP+  ++ K I+               L      +      G   RYI++      +
Sbjct: 241 IRSVPISENLYKEIM---------------LASSSSAKIFSTTYGSAHRYIKKALPDY-V 284

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           P     H LRH+FATH + N GD+  +Q ILGH ++  T  Y + +  +    + 
Sbjct: 285 PEGQATHVLRHTFATHFMMNRGDILILQRILGHQKIEQTMAYAHFSPDHLIQAVQ 339


>gi|256957791|ref|ZP_05561962.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256948287|gb|EEU64919.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|315035859|gb|EFT47791.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0027]
          Length = 389

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/320 (17%), Positives = 119/320 (37%), Gaps = 41/320 (12%)

Query: 18  RQNWLQNLEIERG---LSKLTLQSYECDT-RQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
            +N+  N+  +     L   T++ Y     ++FL         +I    I+ +    I A
Sbjct: 69  FENFYNNMWKKEAKTILEPRTIREYSDIIDKRFLPSFKNKKIREIKPFQIKDI---VIAA 125

Query: 74  FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLK---KSNSLPRAL 129
               ++   +  ++ KR L+ + S     + + +I T + + ++R  K   K    P   
Sbjct: 126 QPLSKKNTTLSRKTKKRYLNALSSVFNVARDQYRIITHNPVSDVRLPKESVKKKGTPEPY 185

Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
           + ++   ++D +  H + +TK       A++   +  G R  E  ++   +      T++
Sbjct: 186 SIEEVKLMLDALEEHANLKTK-------ALVMTAFITGAREGEIAAVEESDFDFSAMTVQ 238

Query: 190 IQ-------GKGDKIRI---------VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
                     K  + R          +P+  S  + +  +  +           P  + +
Sbjct: 239 FHQRIVLDENKKYQQRDGLKASDSKTIPVPRSYLELMKTFMSINQKARKELRIDPKHKYV 298

Query: 234 RGKPLN----PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILG 288
            G P      P    R   +  +  GL      H LRH+ A+ LL++    ++++Q +LG
Sbjct: 299 FGAPEGNFELPTSLYRNWNRFIKRAGL-RQIRFHDLRHTSASFLLADPTIPIKTVQELLG 357

Query: 289 HFRLSTTQ-IYTNVNSKNGG 307
           H    TT  IY +   +   
Sbjct: 358 HKDYRTTMNIYGHALEETKR 377


>gi|147671754|ref|YP_001215915.1| integrase [Vibrio cholerae O395]
 gi|262167833|ref|ZP_06035534.1| integrase [Vibrio cholerae RC27]
 gi|146314137|gb|ABQ18677.1| integrase [Vibrio cholerae O395]
 gi|227014823|gb|ACP11032.1| integrase [Vibrio cholerae O395]
 gi|262023741|gb|EEY42441.1| integrase [Vibrio cholerae RC27]
          Length = 343

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 100/256 (39%), Gaps = 40/256 (15%)

Query: 67  SYTEIRA--------FISKRRTQKI-GDRSLKRSLSGIKS-FLKYLKKRKITTESNILNM 116
           +Y++ R+        F+  R  +      ++   L+  K+ F K  +  +    + + ++
Sbjct: 108 TYSDFRSRRMSGELIFVDGRWNRGKPSISTMNSELARFKAVFNKLKELGEWNAPNPLDDV 167

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           +  ++S      L  +Q   L++ V  H   +          I+ +    G R +EA  L
Sbjct: 168 KPFRESEREMSFLTTEQIKLLLELVAQHEIADMLK-------IVKICLSTGARWNEAAKL 220

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
               + + + T     K  K R VP+   + + I +                        
Sbjct: 221 RGSQLSEYKITYT-NTKTKKNRTVPISRELYEEIYK--------------------PTSG 259

Query: 237 PLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            L    +  +   L+  LG+  P    +H LRH+FA+H + NGG++  ++ +LGH  +S 
Sbjct: 260 RLFEECYTPFCYILKNKLGITLPSGQASHVLRHTFASHFMMNGGNILVLRDVLGHADISM 319

Query: 295 TQIYTNVNSKNGGDWM 310
           T  Y++    +  D +
Sbjct: 320 TMRYSHFAPDHLSDAI 335


>gi|329770511|ref|ZP_08261889.1| hypothetical protein HMPREF0433_01653 [Gemella sanguinis M325]
 gi|328836260|gb|EGF85929.1| hypothetical protein HMPREF0433_01653 [Gemella sanguinis M325]
          Length = 169

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/161 (24%), Positives = 72/161 (44%), Gaps = 5/161 (3%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
           + AIL L    G+R++E  +L  +++    S + +  KG+K   V +  S    + +Y  
Sbjct: 13  DLAILTLFLKSGIRVNELANLKVKDVDFLNSEINVIRKGNKTDTVIITQSALDKLNDYLS 72

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274
              F L    +  +F     K L+    Q+ + +      +P   + H LRHS+ T L L
Sbjct: 73  SLGFKLER--EDYVFINKNKKGLSIRAIQKLVMKYTDAFNVP--MSPHKLRHSYGTKLAL 128

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
              G++  I + +GH    T+ +Y N + K     + ++ D
Sbjct: 129 KTNGNIPIIMTQMGHSNSDTSMLYINESKKIIKQSIDKLDD 169


>gi|317502290|ref|ZP_07960460.1| hypothetical protein HMPREF1026_02404 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316896308|gb|EFV18409.1| hypothetical protein HMPREF1026_02404 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 406

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/323 (17%), Positives = 109/323 (33%), Gaps = 56/323 (17%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           + + +   R L+  T  SY               +++I    + QL  + I+A+ +K   
Sbjct: 78  FERYMAT-RELADTTRVSYVR-------AWENRVKDEIGNIKVVQLLPSHIKAYYAKLSK 129

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVD 139
                 ++K   + +   L+      I  ++   + + +  K      AL   Q    ++
Sbjct: 130 AGYAYSTIKYIHNLLYPALEMAVDDDIIRKNPAKSSISDYGKPAEEKEALTVSQQEKFME 189

Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--------- 190
            V     + T +       +  ++ G GLR  E + LT ++I     T+ +         
Sbjct: 190 FVKQSNVYNTYYP------MFTIMIGTGLRCGELIGLTWKDINIKAKTVNVDHQLIYKNL 243

Query: 191 ----------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI------QLPLFRGIR 234
                           IRI+P+   V KA  E   +                  +F    
Sbjct: 244 GDGCKFHISTPKTESGIRIIPMTQEVAKAFEEQRKINFMLAKDKSIEVDGYSGFVFTAKS 303

Query: 235 GKPLNPGVFQRYIRQLR---------------RYLGLPLSTTAHTLRHSFATHLLSNGGD 279
           G+PL P      +  +                R   L    +AH +RH+  T +     D
Sbjct: 304 GRPLMPNGVNSVLYNIVDAYNKTEVERAKKEHRKAELLPKFSAHVMRHTACTRMAECRMD 363

Query: 280 LRSIQSILGHFRLSTTQ-IYTNV 301
           ++ +Q I+GH  +  T  +Y ++
Sbjct: 364 VKVLQYIMGHAHIDVTMEVYNHI 386


>gi|298383457|ref|ZP_06993018.1| integrase [Bacteroides sp. 1_1_14]
 gi|298263061|gb|EFI05924.1| integrase [Bacteroides sp. 1_1_14]
          Length = 396

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 107/285 (37%), Gaps = 22/285 (7%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           L + T Q++         +                L++  + +F +  +++     ++ +
Sbjct: 121 LKESTRQNHLSTLELLQEYKKDIV--------FTDLTFEFVSSFDNYLQSKGYHLNTIAK 172

Query: 91  SLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
            +  +K ++     ++    +        +K        L+ ++   + +  L      T
Sbjct: 173 HMKHLKRYVNVAINKEYMDIQKYAFRKYKIKSIEGSHTHLSPEELNKMEEVNLEGKF--T 230

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRIVPLLPSVRK 208
           K+  +++ A L+  Y  GLR S+ ++LT  NI+   Q T  I         V L   +  
Sbjct: 231 KFQKSKD-AFLFCCYA-GLRYSDFINLTAANIVELHQETWLIYKSVKTGIDVRLPLYLLF 288

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
                  L  +  +LN    L               + +  L +   +    + HT RH+
Sbjct: 289 EGKGLRVLENYKDDLNGFFKLKDN--------SNVNKDLNALAKLAEIDKRISFHTARHT 340

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            AT L+ +G ++ ++Q +LGH  + TTQ+Y N+        + + 
Sbjct: 341 NATLLIYSGANITTVQKLLGHKSVKTTQVYANIMDMTIVHDLEKA 385


>gi|253563508|ref|ZP_04840965.1| mobilizable transposon [Bacteroides sp. 3_2_5]
 gi|251947284|gb|EES87566.1| mobilizable transposon [Bacteroides sp. 3_2_5]
          Length = 347

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 86/251 (34%), Gaps = 32/251 (12%)

Query: 71  IRAFISKRRTQKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
            R ++   +  K  +R     S     S  +  LK   + K   E+    +  ++  +  
Sbjct: 118 FREYLLNAKQLKHSNRPMSLNSASGYYSTFRGLLKIAYRDKWFRENINDYLDKIEPQDVK 177

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--- 182
              L   +   L           T        A        GLRIS+ L+L  ++     
Sbjct: 178 KEYLTLNEVKQL---------AATPCDIPVLKAASLFACLTGLRISDILNLQWEDFTIAP 228

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           D    LRI+ +  +           +A L                 +F+      L   +
Sbjct: 229 DQGYCLRIRTQKTQT----------EATLPISYEAYELCGTPGTGKVFKD-----LKRSM 273

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               ++   +  G+    T H  RHS+A   +S G D+ ++  +L H  +STTQIY ++ 
Sbjct: 274 INYPLKSWLKKAGITKPITFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLV 333

Query: 303 SKNGGDWMMEI 313
           +    +   +I
Sbjct: 334 NSKKRETANKI 344


>gi|144900035|emb|CAM76899.1| Phage integrase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 368

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 59/325 (18%), Positives = 116/325 (35%), Gaps = 32/325 (9%)

Query: 8   EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67
           +  S  L +  Q WL +    R   +   ++   D    +       E  IT   + +L+
Sbjct: 57  DAESISLGEAAQAWLDHCATRRDTGRRMERATFRDYDDKVRLHIKDAEVGITTIKLSRLT 116

Query: 68  YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
             E+  F  +       +  +++ L  ++  L +         +    ++ L+ S    +
Sbjct: 117 RKEVNEFRDRLLASGRSEAMVRKVLGVLRLILSHAMDNGQVPGNAAQGVKVLRASRIDQK 176

Query: 128 A--LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
               ++K   TL+DN +            R   +L +   CGLR SEA  L  Q++    
Sbjct: 177 VAVPSKKDVKTLIDNAV-----------GRLRPLLIVSALCGLRASEARGLRWQDVDFAD 225

Query: 186 STLRIQGKGDK------------IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233
             L I+ + D              R VP  P V  A+ E+  L      +++  P   G 
Sbjct: 226 GYLHIRQRADFYCEIGEPKSAAGHRSVPAGPMVLNALREW-KLACPKGEMDLVFPANDGS 284

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
                     +R+ + L +  G+      H LRH   +  +  G  ++ + +  GH  + 
Sbjct: 285 VSDH--NNTMRRHFKPLCQRHGIQTR--WHDLRHFAVSLWIEQGFGIKEVMTFAGHSSVQ 340

Query: 294 TTQ-IYTNVNSK-NGGDWMMEIYDQ 316
            T   Y ++    +    M ++  +
Sbjct: 341 MTMERYGHMFPSPDHQKAMAQVEAR 365


>gi|330997617|ref|ZP_08321462.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329570145|gb|EGG51885.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 410

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/287 (18%), Positives = 104/287 (36%), Gaps = 25/287 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKR 90
           SK ++ +Y    +    F+      ++T     QL+   I  F      +      ++  
Sbjct: 130 SKSSVWTYRKIHKNLAEFIGEKY--RLTDLAFGQLTEPFISDFHHYLLDEKGFSSGTITI 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +S  K   +   +R +       + R      + P++L+    + + D  L     E K
Sbjct: 188 YVSLFKKMCRIAFERGLCKNLLFAHYRVGTPRVTTPKSLSMSDFIKIRDVEL----PEDK 243

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKGDKIRIVPLLPSV 206
              + +  +       G    + +S+T  N       D+  +  + K   +  V LLP  
Sbjct: 244 PRLSVSRDMFLFACYAGTAFIDTVSITKANVKVLEDGDKWLIYNRKKTGTLARVKLLPEA 303

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            + + +Y      D   +   PL        L+    +  +  + +      + + H+ R
Sbjct: 304 LELMAKY-----EDEARDTLFPL--------LSTNRVRIDLITICKLAETSKTYSYHSGR 350

Query: 267 HSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           HSFA+ + L  G  + +I  +LGH  +  TQ Y  V  K   + M +
Sbjct: 351 HSFASLITLEAGVPMETICKMLGHKDVKMTQRYARVTQKKLFEDMDK 397


>gi|296169386|ref|ZP_06851009.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895936|gb|EFG75628.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 584

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 103/279 (36%), Gaps = 28/279 (10%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102
             +F  FLA      I +++I ++    +  +++  R   IG +     +  +  F   +
Sbjct: 238 LTRFAGFLA-----DIGVESIDRIDRPVLERYLANLRGDSIGAQRRGTHIGLLNRFFAAV 292

Query: 103 KKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           ++ +  T+     M       K+   LPRAL E+    L D   L      ++ D  +  
Sbjct: 293 RQHRWDTDLPADAMFFAEDYPKRDERLPRALAEQVMAQLEDPDNLA-----RFTDPAHRL 347

Query: 159 ILYLLYGCGLRISEALSLT----PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           I  +L  CGLRI++AL L       +         +  K  +  +VP+   +R+   E+ 
Sbjct: 348 ITIILMRCGLRITDALRLRRDCVVADAEGAPYLRYLNHKMKRDALVPIDVQLRELTAEHR 407

Query: 215 DLCPFDLNLNIQLPLFRGIRGK--------PLNPGVFQRY--IRQLRRYLGLPLSTTAHT 264
           +           +   R  +          P       R+  +  +R   G P+  T H 
Sbjct: 408 NRTAQRWPAGTPVLFPRPTKNIDGTHPIASPTYRMALLRWLSVCDIRDEHGQPVHLTPHQ 467

Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            RH+  T L++       ++ IL H     T  Y  ++ 
Sbjct: 468 WRHTLGTRLINRDVPQEVVRRILDHDSAQMTGHYARLHD 506


>gi|223369854|gb|ACM88796.1| integrase [uncultured bacterium]
          Length = 163

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 47/94 (50%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A  +      F        P    +    L     Q+ ++   R   +  + + HTLRH
Sbjct: 69  EADRQLGWQYLFPAAKRGVDPRTGVVHRHHLAESAVQKMVKGAVRRTEIAKNASCHTLRH 128

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFATHLL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 129 SFATHLLESGSDIRTVQELLGHNDVRTTMIYTHV 162


>gi|189466894|ref|ZP_03015679.1| hypothetical protein BACINT_03276 [Bacteroides intestinalis DSM
           17393]
 gi|189435158|gb|EDV04143.1| hypothetical protein BACINT_03276 [Bacteroides intestinalis DSM
           17393]
          Length = 407

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 106/289 (36%), Gaps = 27/289 (9%)

Query: 35  TLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
           T+  Y    R     +  FY +E I    + +     +   +  R  +++   +L R + 
Sbjct: 132 TINRYWNCYRCLKACVQSFYEKEDIVFPELSRDFIIYVERHM--RLEKRLCQNTLVRYMK 189

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
             K F+           +    ++  ++  + P  L  ++  T+                
Sbjct: 190 CFKKFVNMGLNMGWMRINPFAGIQ-YRQQENDPTFLTLEEVKTIAGMEFPVARLNIV--- 245

Query: 154 ARNSAILYLLYGCGLRISEALSL-TPQNIMDDQSTLRIQG-----KGDKIRIVPLLPSVR 207
                +       GL   +A  L   + I D+   + I+      K +K R +  +P + 
Sbjct: 246 ---RDMFLFSCFTGLAFIDAKELKRTEIIKDNNGKMWIRKGRHKMKKEKARCISNVPLIT 302

Query: 208 KAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
            AI  LE Y+  P  +  ++ LPLF               Y++Q+     +  + T H  
Sbjct: 303 PAIEILEKYEDHPTCIEKDVCLPLFCN--------QTMNSYLKQIATLCNIDKNLTTHVA 354

Query: 266 RHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           RH+FAT + L+N   L ++  ++GH     TQ Y  V  +     M ++
Sbjct: 355 RHTFATTITLANKVSLENVAKMMGHASTRMTQHYARVLDQTIMSDMEKV 403


>gi|77454660|ref|YP_345528.1| putative integrase/recombinase [Rhodococcus erythropolis PR4]
 gi|229493323|ref|ZP_04387114.1| phage integrase [Rhodococcus erythropolis SK121]
 gi|77019660|dbj|BAE46036.1| putative integrase/recombinase [Rhodococcus erythropolis PR4]
 gi|229319825|gb|EEN85655.1| phage integrase [Rhodococcus erythropolis SK121]
          Length = 427

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 62/377 (16%), Positives = 120/377 (31%), Gaps = 82/377 (21%)

Query: 10  VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA--FYTEEKITIQTIRQLS 67
            S E++     + + L      S  T++SY  D  ++  FLA      E+ +    R  +
Sbjct: 36  ASGEVIGAATLFFEELHA-CDRSSATIRSYGHDLLRWWRFLAAVDVGWERASPAEGRDFA 94

Query: 68  Y----------TEIRA--------------------FISK------RRTQKIGDRSLKRS 91
                         R                     ++        R+ QK    +   +
Sbjct: 95  RWMKIADKPRREHWRRRGEKVSGTTPVGGNAAKSGHWVVNEVTGKPRQGQKFSPATRAHA 154

Query: 92  LSGIKSFLKYLKKRK----------------------ITTESNILNMRN----LKKSNSL 125
            + +++F  +                              +    N R      K    +
Sbjct: 155 ETVLRAFYDFQMSIGAGPVVNPFPVDRSPRAFRSNAHHDPQDPFRNERKGRYRPKVPKRI 214

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P+ + + +   L                 R+ A+L      G R  E LS++ ++    Q
Sbjct: 215 PKRIPDDRFNELF----------AALSSNRDRAMLAFWVSTGARADELLSMSQKSADPGQ 264

Query: 186 STLRIQGKGDKI-RIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIR--GKPLNPG 241
             + +  KG +  + +P  P     +  Y +     D       PL+  +R   + L+  
Sbjct: 265 QLITVIRKGTREVQQLPASPDAFVWLRIYQEEAWGKDAPHGCDHPLWMTLRRPWRQLSYS 324

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIYTN 300
             +    + +  LG   + T H LRH+ A  + S+    L  +Q ILGH  L+TTQ+Y  
Sbjct: 325 GARAMFSRAQSMLG--SNWTIHDLRHTAAFRMTSDPDMPLSDVQWILGHAHLTTTQLYLT 382

Query: 301 VNSKNGGDWMMEIYDQT 317
            +       +   + + 
Sbjct: 383 PSRDEVFAHVRAHHARY 399


>gi|9635493|ref|NP_059584.1| Int [Enterobacteria phage P22]
 gi|168240064|ref|ZP_02664996.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|194450412|ref|YP_002044308.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|138565|sp|P04890|VINT_BPP22 RecName: Full=Integrase
 gi|21914435|gb|AAM81400.1|AF527608_22 Int protein [Salmonella phage P22-pbi]
 gi|15642|emb|CAA27685.1| unnamed protein product [Enterobacteria phage P22]
 gi|8439580|gb|AAF75002.1| integrase [Enterobacteria phage P22]
 gi|16209133|gb|AAL09889.1| integrase [CRIM helper plasmid pAH130]
 gi|16209140|gb|AAL09894.1| integrase [CRIM helper plasmid pAH131]
 gi|28394284|tpg|DAA00998.1| TPA_inf: integrase [Enterobacteria phage P22]
 gi|157734732|dbj|BAF80738.1| integrase [Enterobacteria phage P22]
 gi|169658864|dbj|BAG12621.1| integrase [Enterobacteria phage P22]
 gi|194408716|gb|ACF68935.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|205339757|gb|EDZ26521.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
          Length = 387

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 84/245 (34%), Gaps = 27/245 (11%)

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           + +     +    LS IK+ L+  ++  K+  ++ I+ +   K      R L   +A  L
Sbjct: 137 KPKPAAVATKATHLSFIKALLRAAEREWKMLDKAPIIKVPQPKNKR--IRWLEPHEAKRL 194

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKG 194
           +D                  +++      GLR S  ++L  Q I   +    I   Q K 
Sbjct: 195 IDEC-----------QEPLKSVVEFALSTGLRRSNIINLEWQQIDMQRKVAWIHPEQSKS 243

Query: 195 DKIRIVPLLPSVRKAI------LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           +    V L  +  + +         +     + +          +R    +     R   
Sbjct: 244 NHAIGVALNDTACRVLKKQIGNHHKWVFVYKESSTKPDGTKSPVVRKMRYDANTAWRA-- 301

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
              +  G+      H LRH++A+ L+  G  +  +Q + G   +   + Y ++   +  +
Sbjct: 302 -ALKRAGIE-DFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAHLAPNHLTE 359

Query: 309 WMMEI 313
              +I
Sbjct: 360 HARQI 364


>gi|300856340|ref|YP_003781324.1| putative phage-like integrase [Clostridium ljungdahlii DSM 13528]
 gi|300436455|gb|ADK16222.1| predicted phage-related integrase [Clostridium ljungdahlii DSM
           13528]
          Length = 393

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 94/284 (33%), Gaps = 37/284 (13%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116
            I   ++ +L   +I+ + +K   Q      +      +K FL Y        ++     
Sbjct: 103 PIGCMSLDKLESIQIQRYYNKLFRQGKSSNQINYVNKFLKQFLNYAVDCGYILKNPCSG- 161

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           + +         ++E+      +  L       K  +++   I       G+R  E + L
Sbjct: 162 KKVAIPKENSDKVSERHIPVFNNEDLTKI---IKAENSKIKYIALFSLSTGMRRGEIIGL 218

Query: 177 TPQNIMDDQSTLRIQGK------------------------GDKIRIVPLLPSVRKAILE 212
              +I      + I+                           +  R +PL  S+ + I  
Sbjct: 219 KENDIDYKLKEIHIRRTVATTTIFDDNNKRSKQTIVQEPKSKNSKRTIPLPASLVEIIKA 278

Query: 213 YYDLCPFDL-------NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265
              +   +          +    +F   +G  +N G   +   +  R L +P     H L
Sbjct: 279 SIKIKKSEKLKAGSSYCKDNLDYIFLSEQGNLINAGNLDKTWSKFLRSLNIP-HKKFHAL 337

Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGD 308
           RH++AT    N   L++I  +LGH  +  T  IYT+V  K    
Sbjct: 338 RHTYATKQFENNIPLKTISMLLGHSSIEITANIYTHVLKKEKEK 381


>gi|228471376|ref|ZP_04056177.1| integrase [Porphyromonas uenonis 60-3]
 gi|228306877|gb|EEK15990.1| integrase [Porphyromonas uenonis 60-3]
          Length = 404

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/284 (18%), Positives = 109/284 (38%), Gaps = 25/284 (8%)

Query: 35  TLQSY---ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91
           TL SY       R F+     +    I    I +     ++ +   +     G     R 
Sbjct: 128 TLSSYFTIRKHLRAFIE--EKFHTSDIAFGLIEEDFLDCLQRYSVGKLEHSQGH---YRK 182

Query: 92  LS-GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           ++  +K   +   +  + T     ++   +  N  PRAL+      L    L    +E +
Sbjct: 183 MALAVKKVCRLAYREGLITRQLFAHVTIERGENKRPRALDRASLDKL--QSLTFEPYEVE 240

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRIVPLLPSVRKA 209
              AR+  +       G+   + ++L+ +++  DD+  L ++ +  K   +  +  + +A
Sbjct: 241 LETARD--LFLFACYTGVAYCDMVTLSREHLFTDDEGALWLKFRRQKTNTLCRVKLLSEA 298

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269
           +         +          R     P+   V+   ++ L+   G+ +  +AH  RH+F
Sbjct: 299 VRLMERHQSEE----------RTTLFAPIAYSVYLAQLKALQLRAGISIPLSAHVGRHTF 348

Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           AT + L  G  + ++  +LGH  + TT+ Y +V  K   D   +
Sbjct: 349 ATLITLERGVPIETVSRMLGHSNIQTTERYAHVTPKKLFDEFEQ 392


>gi|224283257|ref|ZP_03646579.1| phage family integrase [Bifidobacterium bifidum NCIMB 41171]
 gi|313140403|ref|ZP_07802596.1| phage family integrase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132913|gb|EFR50530.1| phage family integrase [Bifidobacterium bifidum NCIMB 41171]
          Length = 309

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 81/213 (38%), Gaps = 22/213 (10%)

Query: 103 KKRKITTESNILN--MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
               +          ++     +   + LN+ +   ++ ++ L       W       ++
Sbjct: 91  VDEGLIQRDPTRKAIIKGKPPCSKKTKYLNQFELHAVLADLELGKGPSWDW-------LI 143

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY-- 213
            L+   GLR SEAL LTP +      TL +    D       +P     SVRK  L++  
Sbjct: 144 LLVAKTGLRFSEALGLTPDDFDFVHQTLSVSKTWDYKNGGGFVPTKNASSVRKVQLDWQL 203

Query: 214 -YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
              L     ++    P+F   +            + +      +P+  + H LRH+ A+ 
Sbjct: 204 IMQLSTLLKDMPAGDPIFVNGKVY---NSTANNILARHCERANVPV-ISIHGLRHTHASL 259

Query: 273 LLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
           LL  G  + S+   LGH  ++TTQ  Y +V  +
Sbjct: 260 LLFAGVSIASVSKRLGHASMNTTQDTYLHVIRE 292


>gi|218135225|ref|ZP_03464029.1| hypothetical protein BACPEC_03130 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990610|gb|EEC56621.1| hypothetical protein BACPEC_03130 [Bacteroides pectinophilus ATCC
           43243]
          Length = 261

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 89/229 (38%), Gaps = 34/229 (14%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
            A+++ Q    +  V          +  +   ++Y+L+  G+RISE+  LT ++I  +  
Sbjct: 29  EAISKDQMRKFLKFV------HDDVMYCKYYEVVYILFHTGMRISESCGLTLKDIDLENR 82

Query: 187 TLRI----------------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI----Q 226
           T+ I                       R++P+   V +                      
Sbjct: 83  TVNIDHQLHRTSDMRYIIETTKTDAGTRVLPITEDVAQMFQAIIGDRNTPKVEKSIDGYS 142

Query: 227 LPLFRGIRGKPLNPGVFQRYI-RQLRRYLGLPL----STTAHTLRHSFATHLLSNGGDLR 281
             LF    G PL    +Q      + RY  +      + T H  RH++ +++  +G + +
Sbjct: 143 GFLFYDDNGMPLVAMHWQHRFNHMVGRYNDIYRVQMPNITPHVCRHTYCSNMAKSGMNPK 202

Query: 282 SIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI--YDQTHPSITQKDKK 327
           ++Q ++GH  +S T  +YT++   +  + +  +  + +    + QK +K
Sbjct: 203 TLQYLMGHSDISVTMNVYTHIGFDDAEEELKRLEDFRKAQAEVEQKKEK 251


>gi|76799205|ref|ZP_00781383.1| integrase [Streptococcus agalactiae 18RS21]
 gi|76585441|gb|EAO62021.1| integrase [Streptococcus agalactiae 18RS21]
          Length = 382

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/321 (18%), Positives = 120/321 (37%), Gaps = 58/321 (18%)

Query: 9   IVSFELLKERQNWLQ---NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           +++ + LKE +  +Q    L+ ER ++K  L                   +K+TI  I  
Sbjct: 84  MLTKQWLKEYEKTVQGSTYLKTERNINKHIL----------------PKLDKVTIGDINP 127

Query: 66  LSYTEI-RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L    +   + S+ +          + L  +++ L    +    + +  L +   K    
Sbjct: 128 LLVQNLTEEWCSQLKYGG-------KILGLVRNILNLAVRYGYISNNPALPITAPKIKRE 180

Query: 125 LPR---ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
                      Q    ++  L+  +   + I     A+  LL   G+R  E L+LT  ++
Sbjct: 181 RKTGNNFYTLNQLKQFLE--LVEKTDNIEKI-----ALFRLLAFTGIRKGELLALTWDDL 233

Query: 182 MDDQSTLR-------------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
             +  ++              +       R++ L     + + + ++  P          
Sbjct: 234 NRNTLSINKAVTRTQTGLEIDVTKTKSSDRLISLDDETLEILQQLHETFP------SSTF 287

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
           +F+   G  + P + ++++ Q+ +   LP   T H  RH+ A+ L  +G  L+ +Q  LG
Sbjct: 288 MFQSESGGIMTPSLPRKWLLQIIKGTDLPQ-ITVHGFRHTHASLLFESGLSLKQVQHRLG 346

Query: 289 HFRLSTTQ-IYTNVNSKNGGD 308
           H  L TT  +YT++      D
Sbjct: 347 HGDLQTTMNVYTHITQSAIDD 367


>gi|310639697|ref|YP_003944455.1| integrase family protein [Paenibacillus polymyxa SC2]
 gi|309244647|gb|ADO54214.1| Integrase family protein [Paenibacillus polymyxa SC2]
          Length = 374

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 100/273 (36%), Gaps = 33/273 (12%)

Query: 63  IRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
           +++L    I+ +      +K +   ++ +  S I+  L Y  K+++   +    +   K+
Sbjct: 104 LQKLQSGHIQQYYKHLMDEKNLSPNTVHKHHSLIRKALDYGLKQQLVYRNVADAVELPKR 163

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
                ++  ++Q + L+           K  + +    +YL    GLR  E + L  + +
Sbjct: 164 KRYEGKSYTKEQLIELL----------KKVKNTKLEIPIYLAVYLGLRREEIIGLKWKYV 213

Query: 182 MDDQSTLRI---------------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--- 223
             +  TL I                      R + +   +   +  +        N+   
Sbjct: 214 DFESRTLHIFEVRTSAGKAIITKAPKTEKSRRSLHINDDLYSLLKMHKVKQEELKNMLGS 273

Query: 224 --NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
             +    ++    GKP          +       LP     H LRHSFA+ L + G DL+
Sbjct: 274 AYDNAGYVYSHDNGKPYRVNSVTEQFKTFLEKQQLPK-IRLHDLRHSFASVLYNQGTDLK 332

Query: 282 SIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           +I   LGH  + TT +IYT+   K   + +  +
Sbjct: 333 AISEALGHSDIGTTNKIYTHRFDKTHKNTINAM 365


>gi|301048720|ref|ZP_07195729.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 185-1]
 gi|300299466|gb|EFJ55851.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 185-1]
          Length = 336

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/270 (21%), Positives = 110/270 (40%), Gaps = 38/270 (14%)

Query: 37  QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR---SLS 93
           Q++E  T++F   L   +   I    + ++S   +  + S R    I   ++ R    LS
Sbjct: 84  QNHEHGTKEFNHLLKTISG--IGDIPVSRMSKRALMDYRSMRLRDGISAATINRDMYRLS 141

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
           G+  F K ++  + + +  I  +  L ++N     L + +   L++            +D
Sbjct: 142 GM--FTKLIQLDEFSGQHPIHGLPPLAEANPEMTFLEKAEIEKLLNV-----------LD 188

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
             +  +  L    G R +E  +L P  I + + T  ++ K  K R VP+   + K + E 
Sbjct: 189 GDDLLVALLCLSTGGRWTEVATLKPAQITNCRVTF-LKTKNGKKRTVPISEELEKKVKEE 247

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
                F ++                      R ++       +P +   H LRH+FA+H 
Sbjct: 248 ASAKLFKVDYEKF--------------CGILRRVKP-----DIPPNQATHILRHTFASHF 288

Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           + NGG++ ++Q ILGH  +  T  Y ++  
Sbjct: 289 MMNGGNIIALQQILGHASIQQTMAYAHLAP 318


>gi|38505884|ref|NP_942502.1| hypothetical protein sll6059 [Synechocystis sp. PCC 6803]
 gi|38423908|dbj|BAD02116.1| sll6059 [Synechocystis sp. PCC 6803]
          Length = 188

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 71/188 (37%), Gaps = 12/188 (6%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L E++   L    LL           R+  +  +    G RI E  SL   ++  D  
Sbjct: 10  KVLTEQELHDLFTIGLL---------TPRDRLLFGICLYTGCRIGETCSLAWADVTTDAM 60

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQR 245
           T RI+    K      +    + + + Y      +       +FRG R    L+P +  +
Sbjct: 61  TFRIEKTKTKSSRTVAISLALQVLFDDYRQAQRSVRF-PSSYVFRGKRVGSHLHPSMAHK 119

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            ++     +G+    + H+ R +  T +   G +LR IQ I GH  L+    Y  V+ + 
Sbjct: 120 ILKAATDRIGV-RGVSTHSFRRTALTMMCRKGINLRVIQKISGHKNLNVLSHYLEVSEQE 178

Query: 306 GGDWMMEI 313
               +  I
Sbjct: 179 KEQALSTI 186


>gi|315181692|gb|ADT88605.1| Hypothetical bacteriophage integrase [Vibrio furnissii NCTC 11218]
          Length = 334

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/308 (16%), Positives = 105/308 (34%), Gaps = 55/308 (17%)

Query: 19  QNWLQNLEIERGLSKL-------------TLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           + WL+     R LS+L             T ++Y  + +          ++++      Q
Sbjct: 48  KEWLEKPADRRSLSELIELWWKYEGQSKKTAEAYLKEVK--------LVDKELGFPKAHQ 99

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNS 124
           +++  +  +   +  +     +  R ++ + + F   +  ++      +   +       
Sbjct: 100 ITHKLLADYRMAQLNKGRAMTTFNRKMNCLSNVFTALIAVKEFHNPHPVSGFKLKVPKTR 159

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
               L+  +   L+             +   +  +  L    G R  EA  L    +   
Sbjct: 160 EMAFLSVDEMNHLL-----------SVLSGDSYKVAKLCLATGARWGEAEELKGSTVSHC 208

Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244
           + T  +  K  K R VP+   ++  I                       +   L    + 
Sbjct: 209 KVTF-LDTKNGKDRTVPISQELQDEI--------------------VTGKSGRLFKDCYA 247

Query: 245 RYIRQLRR-YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            +  QL++    LP    AH LRH+FA+H + NGG++ ++Q ILGH  +  T  Y +   
Sbjct: 248 EFYVQLKQCNFDLPKGQAAHVLRHTFASHFMMNGGNILTLQKILGHATIQQTMTYAHFAP 307

Query: 304 KNGGDWMM 311
               D + 
Sbjct: 308 DYLQDAVR 315


>gi|294783290|ref|ZP_06748614.1| site-specific recombinase, phage integrase family [Fusobacterium
           sp. 1_1_41FAA]
 gi|294480168|gb|EFG27945.1| site-specific recombinase, phage integrase family [Fusobacterium
           sp. 1_1_41FAA]
          Length = 405

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/294 (18%), Positives = 106/294 (36%), Gaps = 41/294 (13%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T  SY  +T+  +  L ++ +E   ++ I        + +  +   + +   ++    + 
Sbjct: 106 TYSSYLSNTK--ISILPYFFKENKKLKDINTFDIQ--KYYFHELNVRGVSANTVIHYHNL 161

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           +    KY +K  +   + +LN+   KK   + +  N +Q   +++  +L    +  ++  
Sbjct: 162 LSLTFKYAQKIGVININPMLNVEKPKKVRYIAKVYNYEQIKEMLE--ILKREDKALYLGV 219

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI----------------- 197
             ++        GLR SE L L    I    +T+ I     +                  
Sbjct: 220 VITSFF------GLRRSELLGLKWSAINFADNTMSIIHTVTETNLNGKNVLIKKDKTKST 273

Query: 198 ---RIVPLLPSVRKAILEYYDLCPFDLNL-------NIQLPLFRGIRGKPLNPGVFQRYI 247
              R   L  S+++ +LE  +    +            +  ++    G+   P       
Sbjct: 274 AGLRSFVLPGSIKEMLLELKEEQKRNKERLGKGYYKKDEEYVYVNEGGELHKPKFLTNGF 333

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTN 300
           R+      L      H LRHS AT L  +  +++ IQ  LGH    TT  IY +
Sbjct: 334 RKFLAKHNLT-HIRFHDLRHSCATILCESNVNVKDIQMFLGHSSAKTTMDIYVH 386


>gi|89147551|gb|ABD62635.1| integrase [uncultured bacterium]
 gi|89147590|gb|ABD62654.1| integrase [uncultured bacterium]
 gi|89147618|gb|ABD62668.1| integrase [uncultured bacterium]
          Length = 163

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/111 (33%), Positives = 52/111 (46%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +G G       L    R A   +     F  +     P     R   +     Q+ ++  
Sbjct: 52  EGNGRVYLPFALERKYRSANRSWPWQYVFPADRLSVDPRSGEKRRHHVLANNLQKAVKAA 111

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               G+  S + HT RHSFATHLL NG D+R++Q +LGH  +STT IYT+V
Sbjct: 112 MVRAGIRKSGSCHTFRHSFATHLLENGQDIRTVQELLGHKDVSTTMIYTHV 162


>gi|13488151|ref|NP_085858.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14028107|dbj|BAB54699.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 323

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 60/284 (21%), Positives = 111/284 (39%), Gaps = 29/284 (10%)

Query: 38  SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97
           +YE D  +FL FL     +   I     +S      +  +         SL      I+ 
Sbjct: 32  AYEID--RFLRFLKQQWNDVDAIPLADAIS-----NWCGRL--PGRKAISLSGEFGIIRQ 82

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-RN 156
           F  + ++R  T          +K+S   P   + ++ L ++      ++HE  +I A   
Sbjct: 83  FCLHRRRRDPTCYVPEHAFAPVKESPFFPYIFSREEVLRIL---AAASAHEGHFIWASML 139

Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR---KAILEY 213
             ++ +LY  G+R+ EA  L  +++  ++ TL I+    + RIVP+   +    +  L  
Sbjct: 140 RRLVLMLYCTGIRLGEATRLKMEDVDLERGTLLIRNSKRRTRIVPIREDLIGELRLYLHD 199

Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-----LSTTAHTLRHS 268
                 DL+       F   +G PL+       IR++ R L +      +    +  RH+
Sbjct: 200 RRRLLLDLHRPDHGAFFIRQKGGPLDISGASVAIREILRRLDIKPARGRVGARPYEFRHA 259

Query: 269 FATH----LLSNGGDLRS----IQSILGHFRLSTTQIYTNVNSK 304
           FA H        G D+      + + LGH  +  T++Y     +
Sbjct: 260 FAVHRLTAWAEEGADIHVKLPFLSAYLGHQNILGTEVYLKATPQ 303


>gi|324325058|gb|ADY20318.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 385

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/319 (16%), Positives = 112/319 (35%), Gaps = 50/319 (15%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            +S  T   YE + R  L  L  + E K     +++L+  + + FI+    +K   ++++
Sbjct: 76  NVSPRTYTVYEKNIR--LHILPAFGELK-----LKELTRIKYQKFINNLL-EKYSKKTVE 127

Query: 90  RSLSGIKSFLKYLKKR-KITTESNILNMR------NLKKSNSLPRALNEKQALTLVDNVL 142
                +   L        I  ++    ++      N K+     +  +  +    ++ +L
Sbjct: 128 TINVTMHHALDTAVNELGILEKNPTTKIKLRTNHINPKQDE--IKCYDIDELQQFLNYIL 185

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK--------- 193
                       +  ++   L   GLRI E L+L  ++I  ++  L +            
Sbjct: 186 KEKG------GFKYYSLFMFLSRTGLRIGECLALQWEDIDFEEQKLFVNKTLLSTKRNEG 239

Query: 194 --------GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP------LN 239
                       R + + PS    + +        +  N +                 L+
Sbjct: 240 IIFGPPKNKSSKRTISIDPSTMSHLKKMKLEQNKQILKNGKYYKDHNFIFTHEDNSCMLH 299

Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IY 298
           P    ++++Q  +        T H  RH+ A HLL +G +L+ +   LGH  +  T  +Y
Sbjct: 300 PSTL-KFLQQACKKGNF-KYITLHGFRHTHAVHLLQSGANLKYVSERLGHSSIDMTANVY 357

Query: 299 TNVNSKNGGDWMMEIYDQT 317
            ++        + + YD+ 
Sbjct: 358 LHITKSIEETAVNQ-YDEF 375


>gi|315149854|gb|EFT93870.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0012]
          Length = 372

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 87/242 (35%), Gaps = 35/242 (14%)

Query: 97  SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT--SHETKWIDA 154
             L Y   + I   + +  +   KK+ +     NE +    ++   L    +   + ++ 
Sbjct: 135 KMLHYAVAQDIIDINPMQYVVMPKKNRT-----NETKKKQFLELSELKDFLAEARETLNF 189

Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK---------------GDKIRI 199
           ++  I  +L   GLR  E  +LT ++I      L +                      R 
Sbjct: 190 QDYLIFRVLAFTGLRKGELYALTWEDINISYKQLTVNKTLTRIGKEYTISTPKTKASNRT 249

Query: 200 VPLLPSVRKAILEYYDLCPFDL-------NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
           + L  +    ++ +      +L         N +  +F         P      +     
Sbjct: 250 IGLDDTTVSELIVWKKNQKQELLKYGFKTKSNDKQLIFHRKNNTLHYPEHINVLLS---- 305

Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMM 311
              +  S + H+ RH+ A+ L  +G  ++ +Q  LGH  ++TT  IYT+V   +  + + 
Sbjct: 306 -SEMKTSLSPHSFRHTHASLLFESGATIKDVQKRLGHTNVNTTMDIYTHVTKSSEKNAIE 364

Query: 312 EI 313
           ++
Sbjct: 365 KL 366


>gi|312946178|gb|ADR27005.1| putative defective integrase; Qin prophage [Escherichia coli O83:H1
           str. NRG 857C]
          Length = 426

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/320 (12%), Positives = 100/320 (31%), Gaps = 53/320 (16%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT-EEKITIQTIRQLSYTEIRAFISK 77
           + +L   E E  ++K +L +Y    +  L  +        I  + + ++    +  +   
Sbjct: 86  EKFLALKETE--VAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLTGYQIP 143

Query: 78  RRTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +             ++   ++ + +  ++        ++    +  LK+S ++P  L+ +
Sbjct: 144 KSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLPDNPFKGISPLKESRTIPDPLSRE 203

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + + L+D      +            +  +    G+R  E  +L  ++I     T+ I+ 
Sbjct: 204 EFIRLIDACRNQQAKN----------LWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRR 253

Query: 193 KGDKIRIVPLLPSV--------------------------RKAILEYYDLCPFDLNLNIQ 226
              K R                                  ++ I++ +            
Sbjct: 254 NLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKC 313

Query: 227 LPLF-------RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
             +F           G        ++      +  GL    +  + RH++A   L+ G +
Sbjct: 314 TFVFQPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQS-RHTYACWSLTAGAN 372

Query: 280 LRSIQSILGHFRLSTT-QIY 298
              I + +GH       Q+Y
Sbjct: 373 PAFIANQMGHADAQMVFQVY 392


>gi|296394735|ref|YP_003659619.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296181882|gb|ADG98788.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 387

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/314 (14%), Positives = 107/314 (34%), Gaps = 51/314 (16%)

Query: 44  RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT--------------QKIGDRSLK 89
           R+   +L  +         I  +  ++++ ++++                 + +   S+ 
Sbjct: 82  RRKACYLNLHVMPYWRDWWIEDIKRSDVQRWVNQLGEPVVEELPGGKLRTVRDLAPASVY 141

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149
           + LS +  +L+    +++   +    +   + + +  R L   +   +     L      
Sbjct: 142 QCLSMLSGYLEAAVVKEVIGANPCRGVARPRPTPAPNRYLERFEFDGIQRFHKLA----- 196

Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI------------ 197
                ++  +   L+  G+R+ EA     ++       + ++   D              
Sbjct: 197 -----QDGFLCDFLHETGMRLGEAYGFHIESYNPHLMIVEVERNWDSEALVMKTPKDHQR 251

Query: 198 RIVPLLPSVRKAILEYYDLC----------PFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
           R VP+   +   I  +                 L       LF      P++   F+   
Sbjct: 252 RAVPVSRRLAARIDAHIAERGLGKPPQVRYEKGLRKPTTGLLFTEDGRGPVDDHRFENRF 311

Query: 248 RQL---RRYLG-LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           +      R  G L      H LRH+ A+ LL  G  L  +Q ILGH    TT+IY ++ +
Sbjct: 312 QAACAHARRAGVLIGHVRRHDLRHTCASRLLRKGVPLSVVQEILGHASSKTTEIYKHLGN 371

Query: 304 KNGGDWMMEIYDQT 317
            +  + + ++ D+ 
Sbjct: 372 -SYWEEVRQVLDEY 384


>gi|223369808|gb|ACM88773.1| integrase [uncultured bacterium]
          Length = 161

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/161 (24%), Positives = 62/161 (38%), Gaps = 37/161 (22%)

Query: 177 TPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY--------------------- 214
             +++  D   + +  GKG K R   L   +  AI +                       
Sbjct: 1   RVKDVDFDNGCITVHDGKGGKSRNSLLPTGLIAAIKQLIDRVLVIQQEDNAQGVGPSLPF 60

Query: 215 --------------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLS 259
                          +  F  +     P    +    L+  V ++ ++   +  G+    
Sbjct: 61  ALDRKYPSAYRQPAWMFIFPSSTLCNHPYSGKLYRHHLHDSVARKALKAAVQKAGILNKR 120

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            T HT RHSFATHLL  G D+R++Q +LGH  + TTQIYT+
Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTH 161


>gi|218263745|ref|ZP_03477746.1| hypothetical protein PRABACTJOHN_03436 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222535|gb|EEC95185.1| hypothetical protein PRABACTJOHN_03436 [Parabacteroides johnsonii
           DSM 18315]
          Length = 206

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/214 (21%), Positives = 82/214 (38%), Gaps = 26/214 (12%)

Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168
           T         +KK  +    L +++   L+D  L +   E          +       GL
Sbjct: 1   TRDPFREYE-IKKEETTRSFLTKEEIRLLMDGRLKNAKQE------LYRDLYLFCAFTGL 53

Query: 169 RISEALSLTPQN---IMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
             ++  +LT +N     D+   + I + K   +  + LL   ++ I +Y  LC       
Sbjct: 54  SFADMRNLTEENIHTYFDEHEWININRQKTGVVSNIRLLDIAKRIIDKYRGLCG------ 107

Query: 225 IQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRS 282
                    R  P+ +       IR + +  G+    T H  RH+ AT   LSNG  + +
Sbjct: 108 -------NGRIFPVPHYNTCLAGIRSVAKRCGITKHITWHQSRHTAATTVFLSNGVPIET 160

Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           + S+LGH  + TTQIY  +  +     M  +  +
Sbjct: 161 VSSMLGHKSIKTTQIYAKITKEKLNQDMENLAAR 194


>gi|218531270|ref|YP_002422086.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218523573|gb|ACK84158.1| integrase family protein [Methylobacterium chloromethanicum CM4]
          Length = 373

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/319 (16%), Positives = 116/319 (36%), Gaps = 41/319 (12%)

Query: 2   EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61
           +G + P+ +S  + +  + WL+  E +R L   T++ Y          +  +    I   
Sbjct: 51  QGVHTPDSLSPTVAEAAEIWLKRCERDR-LEPTTIEQYR-------GHVTLHIAPHIGAV 102

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            + +L+   +  F  K  T        +R L  + S +   ++R + T +N+ + + +K+
Sbjct: 103 KLSRLTAPLVNEFAEKLLTGGRSRELCRRVLISLSSIVTEAQRRGLVTVNNVRSAKPVKR 162

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
           S               +  ++  T   ++        ++  L   GLR SE   L  +++
Sbjct: 163 SGRE-DTRPVMPTKAELRAIIRATPDRSRP-------MILTLLFAGLRGSEMRGLLWEDV 214

Query: 182 MDDQSTLRIQGK------------GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
                 L ++ +               IR +PL P++ + +  +  L   +  L +  P 
Sbjct: 215 DLKCGVLHVRRRADRFNSFGPPKSKAGIRDIPLPPTLLQDLKAWR-LACPNGPLGLVFPT 273

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH---------LLSNGGDL 280
             G         +  R    L+   G+ +      L+  +  H          +  G + 
Sbjct: 274 TAGTVQGH--ANILHRVFWPLQIAAGVTVPGPDGRLKAKYGLHALRHAAAALWIEQGLNS 331

Query: 281 RSIQSILGHFRLSTTQ-IY 298
           + IQ+++GH  +  T   Y
Sbjct: 332 KRIQTLMGHASIQQTMDRY 350


>gi|156138687|dbj|BAF75920.1| integron integrase [uncultured bacterium]
          Length = 181

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/68 (47%), Positives = 41/68 (60%)

Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292
           +R   ++    Q+ I    R  GL      HTLRHSFATHLL  G D+R+IQ +LGH  +
Sbjct: 114 VRRHHIHETTVQKAITDAVRRAGLSKPAGCHTLRHSFATHLLEAGQDIRTIQELLGHSDV 173

Query: 293 STTQIYTN 300
           STT IYT+
Sbjct: 174 STTMIYTH 181


>gi|27468530|ref|NP_765167.1| transposition regulatory protein tnpB [Staphylococcus epidermidis
           ATCC 12228]
 gi|282919765|ref|ZP_06327497.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus C427]
 gi|27316077|gb|AAO05211.1|AE016749_157 transposition regulatory protein tnpB [Staphylococcus epidermidis
           ATCC 12228]
 gi|282316403|gb|EFB46780.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus C427]
          Length = 675

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 113/336 (33%), Gaps = 28/336 (8%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           N  +I S ++ +  + +L+N  I   ++  T + Y    R    F    ++ K T  ++ 
Sbjct: 205 NFEKIESIKMRELAKKYLKNRLITGDIAFATARFY---IRVLTRFFQNISKNKETRNSLN 261

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRS------LSGIKSFLKYLKKRKITTESNILNMRN 118
           +L    I A+I                      L  I+ FL  +  +         ++R 
Sbjct: 262 ELDRCHIEAYIEFLFEYAANKNLQSTKNFVREELKTIRRFLNDIITQNYAIA-PYQDIRF 320

Query: 119 LKKSNSLPR--ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           L     LP+    N  Q   + D VL         +      ++++ +  GLRIS+ L+L
Sbjct: 321 LIYPQDLPKHEKKNSSQIDYIPDFVLEQLFEHINDLHKDLIPVVWIAFKTGLRISDVLTL 380

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ---------L 227
               +        I     K  +      +   + +   +   D                
Sbjct: 381 QNNCLAKVNGKYSIITDIAKTFVKGHRIPIDNKLADIIAVLIADSKSKSTKDNNPNNYIF 440

Query: 228 PLFRGIRG-KPLNPGVFQRYIRQLRRYLGLP------LSTTAHTLRHSFATHLLSNGGDL 280
            +++G R   P    + + ++  L +   +            H  RH++A  LL+ G D+
Sbjct: 441 AIYKGKRKGMPFTQHMVRAHLNHLSKTKNIIDEQGEIFHFKTHQFRHTYAVKLLNGGADI 500

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            +IQ +L H     T  Y  +           + DQ
Sbjct: 501 LTIQELLAHSSPEMTLRYAKLLDDTKRKAFESVIDQ 536


>gi|331085637|ref|ZP_08334720.1| hypothetical protein HMPREF0987_01023 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406560|gb|EGG86065.1| hypothetical protein HMPREF0987_01023 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 399

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/316 (13%), Positives = 109/316 (34%), Gaps = 48/316 (15%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSL 88
           G+   T+  Y               ++    + I  +  ++ + ++   +  +K    S+
Sbjct: 97  GVRPTTVAGYGTVINLL-------KKDPFGKRRIDTVRISDAKCWMIHLQQVEKKSYSSI 149

Query: 89  KRSLSGIKSFLKYLKKRKITTESNIL--NMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
                 ++   +      +  ++      M  +   +    A++  +    +   +    
Sbjct: 150 HSIRGVLRPAFQLAVDDDLIKKNPFQFQLMEVVVNDSVTREAISRAEERKFLR-FVKEDP 208

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---------------- 190
           H  ++ +      +Y+L+  GLRISE   LT  +I   + T+ I                
Sbjct: 209 HFCRYYEG-----IYILFKTGLRISEFCGLTISDIDFKEHTINIDYQLQKKSKIGYYIQE 263

Query: 191 ----QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR--------GIRGKPL 238
                G         +    RK I +        +       L+          +  +  
Sbjct: 264 TKTTSGTRKIPMTADVEECFRKIIEKRNPPKSEPMVDGKSGFLYFDKNESICYSLHWEHY 323

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QI 297
              + Q+Y    +  + +    T H  RH++ +++  +G + +++Q ++GH  +S T   
Sbjct: 324 FQHIIQKYNNTYKVQMPV---ITPHVCRHTYCSNMAKSGMNPKALQYLMGHSDISVTLNT 380

Query: 298 YTNVNSKNGGDWMMEI 313
           YT+VN ++  + +  I
Sbjct: 381 YTHVNLEDAREEVARI 396


>gi|254293092|ref|YP_003059115.1| integrase family protein [Hirschia baltica ATCC 49814]
 gi|254041623|gb|ACT58418.1| integrase family protein [Hirschia baltica ATCC 49814]
          Length = 381

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 97/276 (35%), Gaps = 27/276 (9%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89
            L   T   Y+     F++        K+    ++ +S  +I A     R          
Sbjct: 111 HLKPSTASEYKRSIEIFIL-------PKLGRLIVKDVSRQDIIALHHDMRGTPYQA---N 160

Query: 90  RSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
           R+L  +       +   +  E  +    ++  ++     R L+ ++   L         H
Sbjct: 161 RTLGVLSILFSQAEVWGLRDEFTNPCRGIKKFREEKRE-RFLSLEELQRL-----GRALH 214

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207
           E   +     A + LL   G R+ E   L   ++  D+  L +       + + L  S  
Sbjct: 215 EETALAPSAVACIKLLILTGCRLGEIQKLKWVHVDLDRQLLLLPDSKTGKKTIYLGTSAV 274

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
             +            L+    +    +G+ L     Q+  R++R+   L      H LRH
Sbjct: 275 DLLK------STPRQLDNPFVIAGYKQGQYLTD--LQKPWRRIRKAANLE-DVRIHDLRH 325

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
           ++A+  ++NG  L  I  +LGH +  TT  Y ++  
Sbjct: 326 TYASTAVANGESLPMIGKLLGHSQPQTTARYAHLAD 361


>gi|301059797|ref|ZP_07200691.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300446123|gb|EFK09994.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 375

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/290 (17%), Positives = 110/290 (37%), Gaps = 23/290 (7%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           W + L+I R LS+ T   Y    R  +               + Q++  +I  +   ++ 
Sbjct: 81  WDERLKI-RELSQKTHNDYVYWLRILMKVFGDKL--------LCQITKEDIEEY-RNQKA 130

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           Q+  +    + L  I++   +  K      +    +  L +   +         +   + 
Sbjct: 131 QEFSNVCANKHLLRIRNVFAHGIKILAVANNPAKAVPLLSERAHI-----RDTFVLPAEL 185

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL----RIQGKGDK 196
             +  + +         A++ L    G    E LSL    I  D   +      + K  +
Sbjct: 186 ERILAASQKLRSKYYLPAVILLGAEHGASRQEILSLKWSKIKFDFQDIGLVEFFRTKTGR 245

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY---IRQLRRY 253
            R   L+P  +KA+LE+     F  +      +   +    L+   F+R+    ++    
Sbjct: 246 KRTEYLMPRTKKALLEWQSHLDFMRHRKRITDIKTDLVFCHLDGSPFRRFDTAWKKALDL 305

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303
            G+      H LRH+F ++L+ +GG ++  + ++GH  +S T  Y+++ +
Sbjct: 306 AGI-KGLHFHDLRHTFCSNLIISGGGIKDAKEMIGHKDISMTDRYSHLTN 354


>gi|171779406|ref|ZP_02920370.1| hypothetical protein STRINF_01251 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282023|gb|EDT47454.1| hypothetical protein STRINF_01251 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 311

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 107/259 (41%), Gaps = 26/259 (10%)

Query: 57  KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN- 115
           K+ IQ + ++SY +I    +    ++    +       +K  +       +         
Sbjct: 50  KLQIQHLDRISYQKILNQYASVHERQ----TTMDFHHHLKCAILDAVDEGLIPRDPTRKA 105

Query: 116 -MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174
            ++  +     P+ LN+ +   L+D++ L +     W       ++ L+   GLR SEAL
Sbjct: 106 IIKGKQPREKKPKFLNQYELHKLLDDLDLKSEINMDW-------LILLIAKTGLRFSEAL 158

Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY---YDLCPFDLNLNIQ 226
           +LTP++    + TL +    +       LP     SVRK  +++           +L   
Sbjct: 159 ALTPKDFDLTRQTLSVSKTWNYKENGGFLPTKNESSVRKIPIDWQTVIQFAELLKSLPED 218

Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286
            P+F   +            + +  +  G+P+  + H LRH+ A+ LL  G  + S+   
Sbjct: 219 KPIFVKGKVY---NSTVNDRLARHCKNAGVPI-ISIHGLRHTHASLLLFAGVSIASVARR 274

Query: 287 LGHFRLSTTQ-IYTNVNSK 304
           LGH  ++TTQ  Y ++ ++
Sbjct: 275 LGHSNMTTTQKTYLHIINE 293


>gi|70732078|ref|YP_261834.1| phage integrase family site specific recombinase [Pseudomonas
           fluorescens Pf-5]
 gi|68346377|gb|AAY93983.1| site-specific recombinase, phage integrase family [Pseudomonas
           fluorescens Pf-5]
          Length = 445

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 91/269 (33%), Gaps = 20/269 (7%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE---SNILN--M 116
            I  L   +I A+ +      +  RS     + +++   Y  + +I      +      +
Sbjct: 40  DITTLDRRKILAWRNNVVEGGLSRRSWNTYSNHLRTIWTYALEYEIIPSSLTNPFKKSTL 99

Query: 117 RNLKKSNSLPRALNEKQALT----LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
              K+ + +      +QA      LVD      +           A   + Y  G+R++ 
Sbjct: 100 IAPKRPSKIISGDGIRQARHWLQSLVDQEKSSGTRSPITPAWFWLATFEMFYYTGIRLNA 159

Query: 173 ALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
            L +  Q++  D   + +     K  +   VP++  +   I +  +              
Sbjct: 160 LLCIRVQDVDWDNRLVYVNADTEKTHREFCVPIMKGLEPHIQKLLNAASSQGFSGQDQLF 219

Query: 230 FRGIRGKP-----LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRSI 283
                        +N    +   ++L    G+    T H  RH+ AT L+     ++   
Sbjct: 220 NVNRFSIHYRSKIMNIDQVEGMYKKLTSAFGI--RMTPHRFRHTLATDLMRQPERNIHLT 277

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           +++L H  ++TT  Y   + ++    + E
Sbjct: 278 KTLLNHSNIATTMSYIEADYEHMRAVLDE 306


>gi|228472229|ref|ZP_04056995.1| site-specific recombinase, phage integrase family [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228276432|gb|EEK15156.1| site-specific recombinase, phage integrase family [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 379

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/292 (19%), Positives = 102/292 (34%), Gaps = 30/292 (10%)

Query: 18  RQNWLQNLEIERGLS-----KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI- 71
              +L+ L  E  LS     K T  +Y+     F  +L+ Y +    I  I  L      
Sbjct: 93  FDYYLKTLSKE--LSDGVKRKSTCNNYKHFITAFTEYLSIYQKNAKFISDISTLICDHFL 150

Query: 72  -RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
            R +I K +      R+    L+ +++F  +   +  T ES + N +           LN
Sbjct: 151 DRIYIEKEK----SARTYNFYLTCMRTFFNFCLSKGFTKESPVKNTKKKSIKEKTRVVLN 206

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           EK+   L            K  +          Y C +R +E   L  +++  ++S + I
Sbjct: 207 EKEKAKL---------ALLKGENFHFYIFCMTTYYCFIRPNELKKLKVEHVNIEKSYITI 257

Query: 191 QG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247
                K  K   V +     + + E+      DL L  +  +        L       + 
Sbjct: 258 PSSISKNRKTENVTIPNIFIEELKEHIGNASKDLFLFGKKFVPGKQAITNLF-----YHW 312

Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299
             +R+          ++L+ +  T +L+ G     ++    H  L  T+IYT
Sbjct: 313 ENVRKKYHFRKEVQFYSLKDTGITDMLNAGVPAIKVRDQARHSDLKITEIYT 364


>gi|45358019|ref|NP_987576.1| Phage integrase [Methanococcus maripaludis S2]
 gi|44920776|emb|CAF30012.1| Phage integrase [Methanococcus maripaludis S2]
          Length = 182

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 67/158 (42%), Gaps = 8/158 (5%)

Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
           +     +LYG  LR+SE L++  +NI  ++   ++     +   + ++P   + + E   
Sbjct: 27  HKLFFKMLYGMALRVSELLTIEVKNINLNEGVCKLLDTKTENFQICVIP---EWLNEDIF 83

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
               D NL     LF+       N       +++  +   +    + HT R S A HLL+
Sbjct: 84  GHIVDNNLKDDDRLFKFK-----NRTYAWELVKKYTKDAKIHKEFSTHTFRRSRALHLLN 138

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           +G  L  +   L H  ++TT  Y  +   +    +++I
Sbjct: 139 DGVPLEKVSKYLRHKSINTTMHYLKITVDDIKKELVKI 176


>gi|167763534|ref|ZP_02435661.1| hypothetical protein BACSTE_01909 [Bacteroides stercoris ATCC
           43183]
 gi|167698828|gb|EDS15407.1| hypothetical protein BACSTE_01909 [Bacteroides stercoris ATCC
           43183]
          Length = 409

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/308 (14%), Positives = 116/308 (37%), Gaps = 24/308 (7%)

Query: 14  LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73
             ++ +++ + +  E+  ++ T +    D +  L+F+   +++      I +L  + I  
Sbjct: 112 FREQLESYKEKVGKEK--AESTYRGLVADYKNLLLFMK--SKKNTEDIVIEELDKSFIED 167

Query: 74  FISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           + +    T  + + +    ++ +K  +   +++         +   + +       L+E+
Sbjct: 168 YYNWMLGTCALANSTAFGRVNTLKWLMYIAQEKGWIRVHPFASFECMPEYKRR-SFLSEE 226

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ--NIMDDQSTLRI 190
           +   ++   L +              +   +   GL  ++  ++T    +   D  T  +
Sbjct: 227 ELQRIIRLELRYKRQRAM------RDMFLFMCFTGLSYADLKAITYDNIHTDSDGGTWLM 280

Query: 191 --QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
             + K     +V LLP   + I +Y        +     P+        L+ G+      
Sbjct: 281 GNRIKTGVAYVVKLLPIAIELIEKYRGADEKKDSPECVFPV-GEYNAMRLSLGII----- 334

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
              R        T H  RH+FA   +  G  L ++Q +LGH  + +TQ+Y  + +   G+
Sbjct: 335 --GRKCNCRAEVTPHIGRHTFAVLAILKGMPLETLQKVLGHKSILSTQVYAELINPKVGE 392

Query: 309 WMMEIYDQ 316
              +I ++
Sbjct: 393 DTDKISEK 400


>gi|134287379|ref|YP_001110762.1| putative integrase [Clostridium phage phiC2]
 gi|93117217|gb|ABE99507.1| putative integrase [Clostridium phage phiC2]
          Length = 404

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/316 (16%), Positives = 111/316 (35%), Gaps = 57/316 (18%)

Query: 34  LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR-----SL 88
            T +SY          +  + E ++    ++ ++   I+ F++ +  +            
Sbjct: 99  NTQESYRN-------LIENHIEPRLGKCKLKSINPAIIQEFLNNKSKETYTQNGEEKHYT 151

Query: 89  KRSLSGI-----KSFLKYLKKRKITTESNILNMRNLKKSNSLP-----RALNEKQALTLV 138
           K  L  I      +    +   K+  E+ +      K    +      + +   +   ++
Sbjct: 152 KGVLKAIYVVLNAALKSAVYPYKLIKENPVQYASIPKNVLKVKNESDNKTITLDEFNKIL 211

Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG------ 192
           +    +T+             L + +  G+R  E L L   N+  D + ++++       
Sbjct: 212 EIYPKNTNIYIP---------LLIGFHTGMRKGEILGLCWDNVDLDNNIIKVRKNLIKRK 262

Query: 193 ----------KGDKIRIVPLLPSVRKAILE-------YYDLCPFDLNLNIQLPLFRGIRG 235
                         IR + +  ++ + + E                       + R   G
Sbjct: 263 VSEFELASPKTKTSIRDIKIGDTLSRILKEEKLNQKKQKIKIGKWYKETEYDWVCRKKDG 322

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             +N       IR + + L +  +   H LRH+ AT LL NG +++ IQ  LGH +LSTT
Sbjct: 323 SFVNHNNIDAAIRTINKKLNINFN--FHCLRHTHATLLLENGANVKYIQQRLGHSQLSTT 380

Query: 296 Q-IYTNVNSKNGGDWM 310
              Y++V SK   + +
Sbjct: 381 MDTYSHVTSKMESETI 396


>gi|294085314|ref|YP_003552074.1| site-specific recombinase, phage integrase family [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292664889|gb|ADE39990.1| site-specific recombinase, phage integrase family [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 420

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 93/262 (35%), Gaps = 19/262 (7%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNL 119
            ++ ++   +R + +    +        RSL+ +   ++  ++      +      MR  
Sbjct: 153 DVQTVTPENVRRWFAALHDRPGAA---NRSLALLSVMMREAERYGYRDANTNPCKGMRRY 209

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP- 178
           +      R L++ +   L   +    S     +     A++ LL   G R SE  +L   
Sbjct: 210 RLRKQE-RFLSDDEYRHLGRMLAAQES-----VTPLRVAMIRLLLLTGCRKSEIRTLKWC 263

Query: 179 --QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG- 235
             +N  + +  L +       +++ L    R  + +      +     I+    R  +  
Sbjct: 264 YYRNGRNGRKHLFLPDSKTGQKMIYLSDPARAILDKIPRKSAWVFPTTIKRKRGRPRKDA 323

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            P     F    R      GL      H LRHS+A+  + NG  L ++  ++GH    TT
Sbjct: 324 VPFFDIDFWNIFRT---RAGLD-DVRLHDLRHSYASLAIRNGVSLVTLGRLVGHVDPETT 379

Query: 296 QIYTNVNSKNGGDWMMEIYDQT 317
             YT++     GD +  I    
Sbjct: 380 LQYTHLTDGALGDAVEIIAQSF 401


>gi|223369836|gb|ACM88787.1| integrase [uncultured bacterium]
          Length = 163

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/93 (37%), Positives = 48/93 (51%)

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           A  E+     F  +     P     R         QR ++Q  R  G+    + HTLRHS
Sbjct: 70  ADREWGWQFVFPSSRRSIDPRSGIERRHHAPEDALQRAVKQALRKAGIVKPGSVHTLRHS 129

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           FATHLL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 130 FATHLLESGYDIRTVQELLGHADVKTTMIYTHV 162


>gi|18092640|gb|AAL59382.1|AF458081_1 IntI1 [Citrobacter freundii]
          Length = 163

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 76/182 (41%), Gaps = 27/182 (14%)

Query: 6   LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
           LP + S ++L + +  ++ L      S  T Q+Y    R F+ F          ++    
Sbjct: 8   LPPLRSVKVLHQLRERIRYL----HYSLRTEQAYVHWVRAFIRFH--------GVRHPAT 55

Query: 66  LSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L  +E+ AF+S     +K+   + +++L+ +  F   +    +     +  +   + S  
Sbjct: 56  LGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDL---PWLQEIGRPRPSRR 112

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LP  L   + + ++            +++  +     LLYG G+RISE L L  +++  D
Sbjct: 113 LPVVLTPDEVVRIL-----------GFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFD 161

Query: 185 QS 186
           + 
Sbjct: 162 KG 163


>gi|53713277|ref|YP_099269.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52216142|dbj|BAD48735.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 435

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/290 (16%), Positives = 102/290 (35%), Gaps = 36/290 (12%)

Query: 34  LTLQSYEC------DTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI-GDR 86
            T ++Y          RQFL      T   +    ++QL+++ I  F    RT+K     
Sbjct: 137 RTEETYSHYVVVYNHVRQFLQ-----TRHHMKDIALKQLTHSFIEQFDFYLRTEKRHSAN 191

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           ++      +K  ++    +         + R  +      R +   +   L+   +   S
Sbjct: 192 TIGGYTILLKKIIRRAINQGTLLRDPFADYRPEQPPQKC-RHMTADELERLMATRIASKS 250

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTLRI---QGKGDKIRIVPL 202
                       +       G+  ++  +L+  +I      T+ I   + K      V L
Sbjct: 251 L------CHTRDMFVFATFTGISYADLCNLSISDISKSSNGTMWIHFKRQKTGSECHVRL 304

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           L   ++ I +Y      D   N+                     ++++ +  G+  + T 
Sbjct: 305 LDIPKQIIEKYKPERKGDRIFNMVGY------------SSTAANLKKVAKLCGIARNITF 352

Query: 263 HTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           H  RH+F T + L  G  L ++  ++GH  + TTQ+Y  + ++   + M 
Sbjct: 353 HMARHNFGTLITLPQGVPLETVSRMMGHLGIKTTQLYAKLTNQKVNEDMK 402


>gi|146301358|ref|YP_001195949.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146155776|gb|ABQ06630.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 290

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 65/288 (22%), Positives = 104/288 (36%), Gaps = 19/288 (6%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           LSK T +SY      FL           T    ++  Y +I   + K   ++   +   R
Sbjct: 16  LSKSTAESYMYTINHFLN----------TNPKAKRYQYKDIVRHMDKVSRKQSNVQYRVR 65

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            LS IK +  YL       +     +    K N   +  +   +  L   +L+   +  K
Sbjct: 66  ILSAIKKYYDYLVMCGYRNDHPCRKLNIKIKGNQTIQVQDLFNSDEL--QLLMERENRYK 123

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-KIRIVPLLPSVRKA 209
            +D RNS ++ LL   GL   E   L  ++I  D  T+ I+G  +   R + L+P     
Sbjct: 124 HLDVRNSVLISLLIYQGLASDEIARLALKDIDLDNGTVYIKGSANLNKRTLELVPKQMIL 183

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRH 267
              Y +     L             G+P+        I  LR   GL         T+R 
Sbjct: 184 FHNYINETRPSLLRGSTDKFILTKLGRPIVVNSILAMIEPLR---GLFPDRKLNPQTVRM 240

Query: 268 SFATHLL-SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           S   + L      L  +Q + GH    TT+ Y  VNS +  + +   +
Sbjct: 241 SVICNWLNEKNIPLERVQELAGHKWPGTTEKYIKVNSSHQREIINRYF 288


>gi|66044669|ref|YP_234510.1| Phage integrase [Pseudomonas syringae pv. syringae B728a]
 gi|63255376|gb|AAY36472.1| Phage integrase [Pseudomonas syringae pv. syringae B728a]
          Length = 468

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/299 (17%), Positives = 108/299 (36%), Gaps = 28/299 (9%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           L   T++ Y   T+ ++ F       + T + +     +E+         ++I  RS   
Sbjct: 19  LRPDTVKIYWAATKSYVRFFGDCLACETTHRDMLDWRRSEL---------ERISKRSWNT 69

Query: 91  SLSGIKSFLKYLKKRKITT--ESNILNMR--NLKKSNSL---PRALNEKQALTLVDNVLL 143
             S +++   Y  +  +     + + N R    K+         ++  +  L ++     
Sbjct: 70  YSSHLRTIYGYAIEHGLLELVVNPLKNTRVMPPKRPKKTVANDASVRARNWLRMLTAEER 129

Query: 144 HTSHETKWIDARNSA-ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
            T+  T+   A     +    Y  G+R++  L L   ++      +R++G+ +K     L
Sbjct: 130 ATAKRTEITPAWFWLSVFETFYYTGIRLNALLCLRYADVYLRDRLIRVRGETEKTHREFL 189

Query: 203 --LPSVRKAILEYYDLCPFDLNLNIQLPLFR------GIRGKPLNPGVFQRYIRQLRRYL 254
             +P    A LE        L       LF         R   +N    +   ++L    
Sbjct: 190 IPIPDGLMAQLETLMQAAKALRFQPGDQLFNVNRFSGHYRRHEMNSNQVEAMYKKLTAMT 249

Query: 255 GLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           G+    T H  RH+ A+ L++    ++   + +L H  ++TT  Y   +     + M E
Sbjct: 250 GI--RMTPHRFRHTIASELMTLPERNIYLTKKLLNHSNIATTMDYIEPDYDMMREVMNE 306


>gi|116662387|ref|YP_829440.1| phage integrase family protein [Arthrobacter sp. FB24]
 gi|116613166|gb|ABK05859.1| phage integrase family protein [Arthrobacter sp. FB24]
          Length = 352

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/283 (19%), Positives = 101/283 (35%), Gaps = 45/283 (15%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR---------KITTESN 112
            +   +  +   F++++R       +       +  F +++  R          +  E  
Sbjct: 53  PLWAATCQDADRFLAEQRRLGRSVSTRAGKAGTLALFYEFMISRYQGRIHRVAGVLVEQP 112

Query: 113 I--------LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI-DARNSAILYLL 163
           I         ++ N++         ++ +                K++  AR+     L 
Sbjct: 113 IDEFNRQSGASLGNVRVPP------SDAEIDAFFSCWRHSIPQARKYLPAARDYFAASLW 166

Query: 164 YGCGLRISEALSLTPQNIMDDQST---LRIQ------GKGDKIRIVPLLPSVRKAILEYY 214
              GLRI+E + L  ++   D      L ++      G+G K R+VP +    + I  + 
Sbjct: 167 RRLGLRINETVMLDIRDWRPDLGGFGKLHVRFGKGAQGRGPKPRLVPAINGAAELIDWWL 226

Query: 215 DLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL---------STTA 262
                    +   P   L    R         +     LRR LGL +           T 
Sbjct: 227 GEVRHQYGEDWGDPGAPLLPSERFDRELGRCGRVGGNALRRSLGLQVEQWLPAWSGRMTP 286

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
           H LRH  A+ L   G D++++Q +LGH  LSTT  Y +V S++
Sbjct: 287 HVLRHYCASSLYGAGMDIKALQELLGHQWLSTTSGYIHVRSEH 329


>gi|325677591|ref|ZP_08157250.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324110713|gb|EGC04870.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 364

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 94/273 (34%), Gaps = 42/273 (15%)

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
            +L  + I  FI+ + T+ +  + +   +  +KS  ++ +       + + N +  KK  
Sbjct: 107 DRLDLSGISKFITDKLTEGLSPKYISDMVIMVKSAARWAEITH-NYANQVKNAKLPKKKT 165

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
                 +  +   ++  V    S+            + L    G+RI EA +L   +I  
Sbjct: 166 KEASFFSPAEQKKIISTVRAEHSNTG--------CGVMLTLFTGMRIGEACALKWADIDF 217

Query: 184 DQSTLRIQGK----------------------GDKIRIVPLLPSVRKAILEYYDLCPFDL 221
           D+  L +                            +R +PL   +   + EY        
Sbjct: 218 DEKMLHVTKTVQRIATFGSESKSAVKVTAPKSESSVRDIPLPDFLVDMLREYR------- 270

Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
                         K + P  F    + L +   +P     H+LRH+FA + L    D++
Sbjct: 271 --GKDTDYILSGTEKVVEPRCFSNRYKALLKKADVPSR-KYHSLRHTFAVNALHQDFDIK 327

Query: 282 SIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
           ++  +LGH   + T  +Y + +       M  +
Sbjct: 328 TLSELLGHSNANITMSVYLHTSMDRKSACMDRL 360


>gi|301163084|emb|CBW22633.1| putative transposase [Bacteroides fragilis 638R]
          Length = 419

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 112/283 (39%), Gaps = 26/283 (9%)

Query: 35  TLQSY-ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKRSL 92
           T ++Y   +  +  +      E K++   +++++ T I  F    R + ++ + +  + +
Sbjct: 137 TQKTYSRYELTKQRMIEFLQKEYKLSDIPVKEITVTHIENFYLYLRQECEVSNNTAMKFV 196

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
               + L + +K  ++      N R      +    L +++  T+      +   ++K +
Sbjct: 197 QRFHTILLFAQKSGLSFIDPFGNFR-FNFDKTDRGYLTQEEIDTIY-----YKEFKSKRL 250

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNI----MDDQSTLRIQGKGDKIRIVPLLPSVRK 208
           +    A ++  Y  GL   +  +L+ ++I       +  ++ +GK      +PLL     
Sbjct: 251 EHVRDAFIFSCY-TGLPYCDIYTLSSEDIKIGVDGKKWIMKDRGKTGVESFIPLLQIPLD 309

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            + +Y            +  L  G     ++      Y+ ++     +    T H  RHS
Sbjct: 310 ILAKY------------EGKLKDGRLLPVISNQKMNEYLAEIAAICQINKRITYHLARHS 357

Query: 269 FATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           FAT   L+ G  + S+  +LGH  + TTQIY  V  +     M
Sbjct: 358 FATEICLTKGVPIESVSKMLGHTNIQTTQIYARVVDRKLSHDM 400


>gi|296875995|ref|ZP_06900053.1| phage integrase family prophage Sa05 [Streptococcus parasanguinis
           ATCC 15912]
 gi|296432986|gb|EFH18775.1| phage integrase family prophage Sa05 [Streptococcus parasanguinis
           ATCC 15912]
          Length = 388

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 81/234 (34%), Gaps = 22/234 (9%)

Query: 96  KSFLKYLKKRKITTESNILNMRNL----KKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151
           K  L+Y    K    +    +       K+     +  +  +  T +D   L      ++
Sbjct: 148 KRILQYGVVMKAIPFNPAREVILPRNTQKEKRQKIKHFDNIELKTFLDY--LDNLDSDRY 205

Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK------------GDKIRI 199
                  +   L   G RI+EAL+L   +I  D + + +                   R 
Sbjct: 206 RYFYEKTLYNFLLATGCRINEALALEWSDIDLDNAIVHVTKTLNRMQEVNSPKSKSSYRD 265

Query: 200 VPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257
           + + P     + +Y      +       +  +F     +  N       ++   +   +P
Sbjct: 266 IDIDPKTVTILKQYKRRQTQEAWKIGQTEKVVFSDFIHEYPNNSTLFTRLKTHFKRAKVP 325

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWM 310
            +   H  RH+ A+ LL+ G   + +Q  LGH  LS T   Y++++ ++    +
Sbjct: 326 -NIGFHGFRHTHASLLLNAGIPYKELQHRLGHSTLSMTMDTYSHLSKESAKKAV 378


>gi|317154905|ref|YP_004122953.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316945156|gb|ADU64207.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 336

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 52/295 (17%), Positives = 105/295 (35%), Gaps = 26/295 (8%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P +VS  LL+    +L+    +R     T ++Y     + +       E       +  L
Sbjct: 49  PNLVSVSLLEWSVEYLEY-SKQR----HTPKTY---LEEKVPAFNRLFEAIPNTTPVTDL 100

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSL 125
           + T     ++  R Q +   +  +    + +   +  K   +  ++  + +         
Sbjct: 101 TVTACLKILT-LRAQDVSGNAANKDRKNLAAAWTWGTKYLGMPRDNPFVAVD-------- 151

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
            R  +++QA  +         +E      ++   L  L   G R SE L LT  +I  D 
Sbjct: 152 -RFPSDQQARYMPPESDFWKVYEVAR--PKDQVFLLTLLHTGARRSELLRLTWDDINLDT 208

Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
             +R+  +      +        + L       ++  ++    +F    G P      Q 
Sbjct: 209 GMIRLWTRKRANGSLEFDWLWLTSRLHDALQKHYEQRISEH--VFCRSDGTPYKWR--QH 264

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
            ++ L +  G+    T H +RH  A+ +   G D+ +I+ IL H    TT  Y +
Sbjct: 265 LMKILCKRAGV-KHFTFHGIRHLLASKMAQKGVDIPNIRDILRHTNSMTTTRYIH 318


>gi|255034688|ref|YP_003085309.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254947444|gb|ACT92144.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 436

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 62/323 (19%), Positives = 126/323 (39%), Gaps = 36/323 (11%)

Query: 5   NLPEIVSFELLKERQNWLQN-----LEIERG-LSKLTLQSYECDTRQFLIFLAF-YTEEK 57
           + P+  S +     Q + ++     L +ERG  S  TL+ +    R    F+ F Y    
Sbjct: 111 DAPQPGSKKQQTLLQAFDEHIEKFELMVERGMRSDNTLRHWRKLKRHVTAFIKFQYKASD 170

Query: 58  ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117
           +    +  L   E+  +++  + + + + S ++ +   +  +K   K+   T + +   +
Sbjct: 171 LNFSELSGLFAEELYEYLTLHKPKPLAEVSARKDVKWTRQIVKIGVKKDFITRNPMEGFK 230

Query: 118 -NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
            +      +P  L  +Q   +    L    H  + ++ R++ I       G    +   L
Sbjct: 231 CSGGDVEVIP--LEFEQVERIHRKKL----HVERLVEVRDAFIFQCF--TGFAYQDIYGL 282

Query: 177 TPQNIMD-----DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           T  +I       ++  +R +GK     +VP+LP V + I +Y    P+ +  +  +P+  
Sbjct: 283 TRDSITLVGPKRERWLVRKRGKTQVGEMVPILPIVEELIQKY-KSHPYCVAHDKLIPVNS 341

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLP------LSTTAHTLRHSFATHLLSNGGDLRSIQS 285
             R        +  Y+++L     +            H  RH FA  +L+NG  L  +  
Sbjct: 342 NFR--------YNTYLKELADICDIRDITGSIRKLDTHDARHFFADMMLNNGVPLEDVSK 393

Query: 286 ILGHFRLSTTQIYTNVNSKNGGD 308
           +LGH  + TT  Y  V      +
Sbjct: 394 MLGHRNIRTTMRYCRVRKSRISE 416


>gi|83722829|gb|ABC41686.1| integrase [uncultured bacterium]
          Length = 163

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/110 (33%), Positives = 55/110 (50%)

Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251
           G G+      L      A  E      F        P     R   ++ G   R +++  
Sbjct: 53  GFGEAWLPHALSRKYPNASRELGWKYVFPAMDRSVDPRDGRERRHHVDDGALSRALKKAC 112

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +  G+    +AHTLRHSFATHL+ +G D+R++Q +LGH  ++TTQIYT+V
Sbjct: 113 KLAGIMKPVSAHTLRHSFATHLIESGYDIRTVQELLGHKDVATTQIYTHV 162


>gi|29347687|ref|NP_811190.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|237718219|ref|ZP_04548700.1| transposase [Bacteroides sp. 2_2_4]
 gi|255008772|ref|ZP_05280898.1| transposase [Bacteroides fragilis 3_1_12]
 gi|313146514|ref|ZP_07808707.1| transposase [Bacteroides fragilis 3_1_12]
 gi|29339588|gb|AAO77384.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|229452403|gb|EEO58194.1| transposase [Bacteroides sp. 2_2_4]
 gi|313135281|gb|EFR52641.1| transposase [Bacteroides fragilis 3_1_12]
          Length = 419

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 112/283 (39%), Gaps = 26/283 (9%)

Query: 35  TLQSY-ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKRSL 92
           T ++Y   +  +  +      E K++   +++++ T I  F    R + ++ + +  + +
Sbjct: 137 TQKTYSRYELTKQRMIEFLQKEYKLSDIPVKEITVTHIENFYLYLRQECEVSNNTAMKFV 196

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
               + L + +K  ++      N R      +    L +++  T+      +   ++K +
Sbjct: 197 QRFHTILLFAQKSGLSFIDPFGNFR-FNFDKTDRGYLTQEEIDTIY-----YKEFKSKRL 250

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNI----MDDQSTLRIQGKGDKIRIVPLLPSVRK 208
           +    A ++  Y  GL   +  +L+ ++I       +  ++ +GK      +PLL     
Sbjct: 251 EHVRDAFIFSCY-TGLPYCDIYTLSSEDIKIGVDGKKWIMKDRGKTGVESFIPLLQIPLD 309

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            + +Y            +  L  G     ++      Y+ ++     +    T H  RHS
Sbjct: 310 ILAKY------------EGKLKDGRLLPVISNQKMNEYLAEIAAICQINKRITYHLARHS 357

Query: 269 FATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           FAT   L+ G  + S+  +LGH  + TTQIY  V  +     M
Sbjct: 358 FATEICLTKGVPIESVSKMLGHTNIQTTQIYARVVDRKLSHDM 400


>gi|315443040|ref|YP_004075919.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315261343|gb|ADT98084.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
          Length = 403

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 53/302 (17%), Positives = 115/302 (38%), Gaps = 34/302 (11%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS---KRRTQKIGDRSLK 89
             T+  Y       L  +     E + ++ +   SY+     +S    +R   +    + 
Sbjct: 103 PKTVAGYRS----LLDTVVLPKWEDVPLKRLDYESYSTWLGALSVDGGQRGAGLSASRIT 158

Query: 90  RSLSGIKSFLKYLKKRKITTESNILNMRN----LKKSNSLPRALNEKQALTLVDNVLLHT 145
           ++   + + LKY ++     ++  L ++      +++    R L+  + L     +L   
Sbjct: 159 QAHQLVGAVLKYAQRTGKVAKNVALEIKRDEDLPEQAERERRYLSHAELL-----MLAKA 213

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-----IQGKGDKIRIV 200
           +   +        +  +L  CGLR  EA++L  +++ D   T+R     + GKG      
Sbjct: 214 ADRFE-------TLTLVLGYCGLRFGEAVALRRRHVGDRVLTVRSSATAVTGKGIVESTT 266

Query: 201 PLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
                    + E        +L  +    +F   +G  L  G ++         +G+   
Sbjct: 267 KTKRDRHVPVPEPVWKRLHAELPTDPNALVFPSRKGGFLPLGEYRWAFDNACAEVGIE-G 325

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNG---GDWMMEIYD 315
              H LRH+ A+  +S G +++ +Q +LGH   + T   Y ++ + +     D + +  D
Sbjct: 326 LVPHGLRHTTASLAISAGANVKVVQRLLGHATAAMTLDRYGHLLNDDLSGVADALGKAID 385

Query: 316 QT 317
            T
Sbjct: 386 ST 387


>gi|303235730|ref|ZP_07322337.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302484177|gb|EFL47165.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 422

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 123/319 (38%), Gaps = 40/319 (12%)

Query: 14  LLKERQNWLQNLEIERG------LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-- 65
           LL+E + +++    E+       ++K T  +Y   T+     +  Y   ++ ++ IR   
Sbjct: 110 LLEEARLFIE----EKRPCVGITVAKPTFANYIYATQ----LIEAYLRGRLGLEDIRYSL 161

Query: 66  LSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           L Y  I       ++++ +   +++ ++  ++  +   +++K        + +  +  + 
Sbjct: 162 LDYGFIEGLDFYLKSERNLSLATIQVAVIFLRKLIGIGQQKKYIRIDPFADYKA-ELPHR 220

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN---I 181
             R L  ++   ++   ++    E          +       GL   +   L P++    
Sbjct: 221 TRRYLTTEELQRVLQTPIIDKQFERA------RQLFIFCAFTGLARVDMQRLKPKHITHN 274

Query: 182 MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
            D    +RI + K +   I+PLLP  ++ +  Y        +      +F       L  
Sbjct: 275 ADGTEEIRIKRQKTNVEAIIPLLPIAKQILSLYI------KDKKADDLIFPN-----LTI 323

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYT 299
                    + +   +    T H  RH+F+T   LSNG  + ++  +LGH  + TTQIY 
Sbjct: 324 RKASFACVNIGQICQIEKGLTFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYG 383

Query: 300 NVNSKNGGDWMMEIYDQTH 318
            +      + M  + D+ H
Sbjct: 384 KITDHKIQEDMTALTDREH 402


>gi|255008617|ref|ZP_05280743.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313146348|ref|ZP_07808541.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313135115|gb|EFR52475.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 414

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/281 (17%), Positives = 104/281 (37%), Gaps = 25/281 (8%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSF 98
           Y+     FL       ++ I ++ + +      +A + K +   +        L  +   
Sbjct: 134 YQKYLTDFLT---SIGKKDIPLEEVTEDFGKSYKAHLKKCKNFGVSQT--NHCLRWLNRL 188

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           L     ++I   +   ++    K  +  R ++ ++   ++      T    K ++    A
Sbjct: 189 LYLAVDKEIIRVNPCEDLEYETKPEARHRYISREEFKKIL-----STPMYDKRMELARRA 243

Query: 159 ILYLLYGCGLRISEALSLTPQN---IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
            ++     GL  ++   L P +     + +  +RI  K  K+     L  + + IL  Y+
Sbjct: 244 FIFSTL-TGLAYADIQLLHPHHIGTNAEGRRYIRINRKKTKVEAFIPLHPIAERILSLYN 302

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
                   + + P+F        N       + +L   +G   + T H  RHSF T L+S
Sbjct: 303 T------TDDEKPVFPLP-----NRDALWFEVHELGVTIGKEENLTYHQSRHSFGTFLIS 351

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
               + SI  ++GH  + TTQ Y  +        M ++ ++
Sbjct: 352 ADIPIESIAKMMGHSNIRTTQGYARITDDKISKDMDKLMER 392


>gi|763052|gb|AAA85500.1| integrase [Streptococcus phage T270]
          Length = 362

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 57/320 (17%), Positives = 117/320 (36%), Gaps = 56/320 (17%)

Query: 9   IVSFELLKERQNWLQ---NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
            ++ + LKE +  +Q    L+ ER ++K             L  L       I    I++
Sbjct: 64  ALTDQWLKEYEKTVQGSTYLKTERNINKH-----------ILPKLDKVKIGDINPLLIQR 112

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           L+      + +  +          + L  +++ L    +      +  L +   K     
Sbjct: 113 LT----EEWCNDLKYGG-------KILGLVRNILNLAVRYGYINNNPALPITPPKIKRKR 161

Query: 126 PR---ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
                     Q    ++  L+  +   + I     A+  LL   G+R  E L+LT  ++ 
Sbjct: 162 KMNNNFYTLDQLKQFLE--LVEKTDNIEKI-----ALFRLLAFTGIRKGELLALTWDDLN 214

Query: 183 DDQSTLR-------------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
            +  ++              +       R++ L     + + E ++  P          +
Sbjct: 215 GNTLSINKAVTRTQVGLEIDVTKTKSSDRLISLDDETLEILQELHETFP------TSTLM 268

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F+   G  + P + ++++ Q+ + + LP   T H  RH+ A+ L  +G  L+ +Q  LGH
Sbjct: 269 FQSKSGGIMTPSLPRKWLLQIIKGIDLPQ-ITIHGFRHTHASLLFESGLSLKQVQHRLGH 327

Query: 290 FRLSTTQ-IYTNVNSKNGGD 308
             L TT  +YT++      D
Sbjct: 328 GDLQTTMNVYTHITQSAIDD 347


>gi|29348544|ref|NP_812047.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29340449|gb|AAO78241.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 410

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 53/287 (18%), Positives = 103/287 (35%), Gaps = 25/287 (8%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKR 90
           SK ++ +Y    +    F+      ++T     QL+   I  F      +      ++  
Sbjct: 130 SKSSVWTYRKIRKNLAEFIGEKY--RLTDLAFGQLTEPFISDFHHYLLDEKGFSSGTITI 187

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
            +S  K   +   +R +       + R        P+AL+    + + D  L     E K
Sbjct: 188 YVSLFKKMCRIAFERGLCKNLLFAHYRVGTPKVMTPKALSMSDFIKIRDVEL----PEDK 243

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQGKGDKIRIVPLLPSV 206
              + +  +       G    + +S+T  N       D+  +  + K   +  V LLP  
Sbjct: 244 PRLSVSRDLFLFACYAGTAFIDTVSITKANVKVLEDGDKWLVYNRKKTGTLARVKLLPEA 303

Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266
            + + +Y      D   +   PL        L+    +  +  + +      + + H+ R
Sbjct: 304 LELMAKY-----EDEARDTLFPL--------LSTNRVRIDLITICKLAETSKTYSYHSGR 350

Query: 267 HSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           HSFA+ + L  G  + +I  +LGH  +  TQ Y  V  K   + M +
Sbjct: 351 HSFASLITLEAGVPMETICKMLGHKDVKMTQRYARVTQKKLFEDMDK 397


>gi|77361033|ref|YP_340608.1| phage integrase [Pseudoalteromonas haloplanktis TAC125]
 gi|76875944|emb|CAI87166.1| putative phage integrase [Pseudoalteromonas haloplanktis TAC125]
          Length = 383

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 52/289 (17%), Positives = 108/289 (37%), Gaps = 40/289 (13%)

Query: 27  IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86
           IERGL K T+  Y+          A    + +    I ++   ++   I K     +  +
Sbjct: 106 IERGLEKSTIAGYKK---------AKNGLKPLWDCNISEVESIDVVKLIEK---STVSRK 153

Query: 87  SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
           +L   +S ++  L      K+   + + N+R       LP+  N        D       
Sbjct: 154 TLSNRISFLRCCLARAVIDKLIKSNPVQNIR---IGEYLPKINNIDSRGAHKDVYPFTPL 210

Query: 147 HETKWIDARN---SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-----------G 192
            + K I+  +    AI+ L++  G+R SE ++L   ++      + I             
Sbjct: 211 EKAKIINGSSGTTRAIVSLVFNTGIRSSEWVALKKADVCLKTKQVSIYEAIVDGIVKATK 270

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-YIRQLR 251
                R +P+   V   +         ++  +    LF   + +  +   F++    +L 
Sbjct: 271 TKAGRRKIPISEDVCDLLA-------IEMKKHDSEYLFLNSQQRVWDQDSFRKNRWIKLL 323

Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
              G+      + +RH+FA+ L+S G +   +  ++GH   +T  +Y +
Sbjct: 324 DSCGVKYR-YPYQMRHTFASQLISEGVNHWKVSKLMGHSSPNT--LYQH 369


>gi|323185883|gb|EFZ71240.1| phage integrase family protein [Escherichia coli 1357]
          Length = 426

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/320 (11%), Positives = 100/320 (31%), Gaps = 53/320 (16%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT-EEKITIQTIRQLSYTEIRAFISK 77
           + +L   E E  ++K +L +Y    +  L  +        I  + + ++    +  +   
Sbjct: 86  EKFLALKETE--VAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLTGYQIP 143

Query: 78  RRTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +             ++   ++ + +  ++        ++    +  LK+S ++P  L+ +
Sbjct: 144 KSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPDPLSRE 203

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + + L+D      +            +  +    G+R  E  +L  +++     T+ I+ 
Sbjct: 204 EFIRLIDACRNQQAKN----------LWCVSVYTGVRPGELCALGWEDVDLKNGTMMIRR 253

Query: 193 KGDKIRIVPLLPSV--------------------------RKAILEYYDLCPFDLNLNIQ 226
              K R                                  ++ I++ +            
Sbjct: 254 NLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKC 313

Query: 227 LPLF-------RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
             +F           G        ++      +  GL    +  + RH++A   L+ G +
Sbjct: 314 TFVFQPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQS-RHTYACWSLTAGAN 372

Query: 280 LRSIQSILGHFRLSTT-QIY 298
              I + +GH       Q+Y
Sbjct: 373 PAFIANQMGHADAQMVFQVY 392


>gi|260843883|ref|YP_003221661.1| putative integrase [Escherichia coli O103:H2 str. 12009]
 gi|257759030|dbj|BAI30527.1| putative integrase [Escherichia coli O103:H2 str. 12009]
          Length = 431

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/320 (11%), Positives = 98/320 (30%), Gaps = 53/320 (16%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT-EEKITIQTIRQLSYTEIRAFISK 77
           + +L   E E  ++K +L +Y    +  L  +        I  + +  +    +  +   
Sbjct: 91  EKFLALKETE--VAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLAVRKELLTGYQIP 148

Query: 78  RRTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +             ++   ++ + +  ++         +    +  LK+S ++P  L+ +
Sbjct: 149 KSNYIVTQPGRSAVTVNNYMTNLYAVFQFGVDNGYLANNPFKGISPLKESRTIPDPLSRE 208

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + + L+D      +            +  +    G+R  E  +L  ++I     T+ I+ 
Sbjct: 209 EFIRLIDACRNQQAKN----------LWCVSVYTGIRPGELCALGWEDIDLKNGTMIIRR 258

Query: 193 KGDKIRIVPLLPSV--------------------------RKAILEYYDLCPFDLNLNIQ 226
              K R                                  ++ I++ +            
Sbjct: 259 NLAKDRFTVPKTQAGTNRVIHLINPAIDALRSQMALTRLSKEHIIDVHLREFGRTEKQKC 318

Query: 227 LPLF-------RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
             +F           G        ++      +  G+    +  + RH++A   L+ G +
Sbjct: 319 TFVFQPEVSAKVKNYGDHFTVDSIRQMWDAAVKRAGIRHRKSYQS-RHTYACWSLTAGAN 377

Query: 280 LRSIQSILGHFRLSTT-QIY 298
              I + +GH       Q+Y
Sbjct: 378 PAFIANQMGHADAQMVFQVY 397


>gi|209918891|ref|YP_002292975.1| putative phage integrase [Escherichia coli SE11]
 gi|209912150|dbj|BAG77224.1| putative phage integrase [Escherichia coli SE11]
          Length = 431

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/320 (12%), Positives = 99/320 (30%), Gaps = 53/320 (16%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT-EEKITIQTIRQLSYTEIRAFISK 77
           + +L   E E  ++K +L +Y    +  L  +        I  + +  +    +  +   
Sbjct: 91  EKFLALKETE--VAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLAVRKELLTGYQIP 148

Query: 78  RRTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +             ++   ++ + +  ++        ++    +  LK+S ++P  L+ +
Sbjct: 149 KSNYIVTQPGRSAVTVNNYMTNLYAVFQFGVDNGYLADNPFKGISPLKESRTIPDPLSRE 208

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + + L+D      +            +  +    G+R  E  +L  ++I     T+ I+ 
Sbjct: 209 EFIRLIDACRNQQAKN----------LWCVSVYTGIRPGELCALGWEDIDLKNGTMMIRR 258

Query: 193 KGDKIRIVPLLPSV--------------------------RKAILEYYDLCPFDLNLNIQ 226
              K R                                  ++ I++ +            
Sbjct: 259 NLAKDRFTVPKTQAGTNRVIYLIKPAIDALRSQMTLTRLSKEHIIDVHLREFGRTEKQKC 318

Query: 227 LPLF-------RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
             +F           G        ++      +  GL    +  + RH++A   L+ G +
Sbjct: 319 TFVFQPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQS-RHTYACWSLTAGAN 377

Query: 280 LRSIQSILGHFRLSTT-QIY 298
              I + +GH       Q+Y
Sbjct: 378 PAFIANQMGHADAQMVFQVY 397


>gi|282850454|ref|ZP_06259833.1| site-specific recombinase, phage integrase family [Veillonella
           parvula ATCC 17745]
 gi|282579947|gb|EFB85351.1| site-specific recombinase, phage integrase family [Veillonella
           parvula ATCC 17745]
          Length = 308

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 57/289 (19%), Positives = 113/289 (39%), Gaps = 35/289 (12%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T++ YE       ++L     E + +  + ++SY ++    ++   ++       +  + 
Sbjct: 31  TMRKYEITL----LWLKKLVPE-LKLSQLNRISYQQLLNDYAEFHERQTTMDFHHQIKAA 85

Query: 95  IKSFLKYLKKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
           I                         R+ +      + LN+ +  TL+ N+ L +     
Sbjct: 86  ILD----AVDEGFIDRDPTRKAIIKGRSPRIKK--IKYLNQFELHTLLVNLKLTSEISWD 139

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----S 205
           W       ++ ++   G+R SEAL+LTP++      +L +    D       LP     S
Sbjct: 140 W-------LILIIAKTGMRFSEALALTPKDFDFSHQSLIVDKTWDYKGSGGFLPTKNRSS 192

Query: 206 VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
           +RK  L++  +  F      L    P+F       +        + +  + LGLP+  + 
Sbjct: 193 IRKIQLDWQTIIKFSELIKGLPEDKPIFV---KGRVFNSTINGVLERYCKKLGLPV-ISI 248

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWM 310
           H LRH+ A+ LL  G  + S+   LGH  ++TTQ  Y ++  +     +
Sbjct: 249 HGLRHTHASLLLFAGVSIASVARRLGHASMTTTQKTYIHIIQEMENRDI 297


>gi|257052475|ref|YP_003130308.1| integrase family protein [Halorhabdus utahensis DSM 12940]
 gi|256691238|gb|ACV11575.1| integrase family protein [Halorhabdus utahensis DSM 12940]
          Length = 430

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 58/296 (19%), Positives = 109/296 (36%), Gaps = 41/296 (13%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR--------RTQK 82
           LS  TL+ Y       L   A    E  T+ T    +  +I   IS+         +   
Sbjct: 54  LSYQTLRGYCR----LLACAARRLPEDTTLTT---ATEDDINGLISRFAKGNHPAVKDDG 106

Query: 83  IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
           +   + ++  + +++F  Y    +        +   LK+ +  P          + D+  
Sbjct: 107 VSHATQRQYQATLRAFYNYH---EELPADP--DGITLKQIDDSPV-----DERDIFDHDD 156

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
           +    E    + R+ AIL LL   G RI    +L  +++  D+    +  + D ++    
Sbjct: 157 VEAMREA-CSNTRDRAILELLLNTGQRIRAIQTLRVKDVNLDEGVFWLNDEADGLKHAEG 215

Query: 203 LPS-------VRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYL 254
                     VR+ +  +      D  L   LP +R      PLN    ++ +R++    
Sbjct: 216 KRPLLGAKAPVRRWLDNHPAPENPDAYLITHLPSYRNTDATTPLNQNSIRKRLRKIGNEA 275

Query: 255 GLPLSTTAHTLRHSFATHLLSNG-GDLRSIQSILGH---FRL-STTQIYTNVNSKN 305
           G+   T  H  RH   T +  +   D  +I+ I+GH    R+  TT  Y ++   +
Sbjct: 276 GVDKPTNPHNFRHFAVTTMYRDYDMDADTIRFIIGHGEDSRIMETT--YRHLTDDD 329


>gi|148975049|ref|ZP_01812029.1| Integrase [Vibrionales bacterium SWAT-3]
 gi|145965558|gb|EDK30807.1| Integrase [Vibrionales bacterium SWAT-3]
          Length = 373

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 108/260 (41%), Gaps = 30/260 (11%)

Query: 62  TIRQLSYTEIRA----FISKRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNM 116
            +++  Y + RA    +  K ++ +I   +    L  +K   K  +K  +    + +  +
Sbjct: 131 HLKERDYLDYRAARIPYRGKNKSIEISPTTHNLELIYLKGMFKKLIKYNQWKYPNPVEAI 190

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             ++ S      L + Q    + N L + +        +   I  +    G RISEAL+L
Sbjct: 191 EPIRTSEKNLAYLTKPQIEEFLFN-LKNFNRVITVSIPQLIVISKICLATGARISEALTL 249

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
           T   + + + T   + KG K R VP+ P++   IL+                    +   
Sbjct: 250 TRSQVAEFKLTYT-ETKGKKNRSVPISPALYHEILD------------------IAVSDH 290

Query: 237 PLNPGVFQRYIRQLRRYL--GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            +    ++   R ++R L   +P     H LRH+FA+H + N GD+  +Q ILGH ++  
Sbjct: 291 KIFDTTYKDAWRYIKRALPNHVPSGQATHVLRHTFASHFMMNKGDILVLQRILGHTKIEQ 350

Query: 295 TQIYTNVNSKNGGDWMMEIY 314
           T  Y++   ++    M  ++
Sbjct: 351 TMAYSHFAPEHL---MQAVH 367


>gi|29349429|ref|NP_812932.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341338|gb|AAO79126.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 403

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/293 (17%), Positives = 106/293 (36%), Gaps = 27/293 (9%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI-GDRSLKRSLSGIKS 97
           Y+     FL  +            + +++    +++ +  +  K  G       L  +  
Sbjct: 134 YQKYLTDFLTSIGKKDI------PLEEVTEDFGKSYKAHLKKCKNFGASQTNHCLRWLNR 187

Query: 98  FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157
            L     ++I   +   ++    K  +  R ++ ++   ++      T    K ++    
Sbjct: 188 LLYLAVDKEILRVNPCEDLEYETKPEARHRYISREEFKKIL-----STPMYDKRMELARR 242

Query: 158 AILYLLYGCGLRISEALSLTPQN---IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214
           A ++     GL   +   L P +     D +  +RI  K  K+     L  + + IL  Y
Sbjct: 243 AFIFSTL-TGLAYVDIKLLHPHHIGTNADGRRYIRINRKKTKVEAFIPLHPIAERILSLY 301

Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274
           +        + + P+F        N       + +L   +G   + T H  RHSF T L+
Sbjct: 302 NT------TDDEKPVFPLP-----NRDALWFEVHELGITIGKEENLTYHQSRHSFGTFLI 350

Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327
           S    + SI  ++GH  + TTQ Y  +        M ++ ++     + + KK
Sbjct: 351 SADIPIESIAKMMGHSNIRTTQGYARITDDKISKDMDKLMERRKEISSGEKKK 403


>gi|159904845|ref|YP_001548507.1| integrase family protein [Methanococcus maripaludis C6]
 gi|159886338|gb|ABX01275.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 182

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 74/185 (40%), Gaps = 18/185 (9%)

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L + +    +D+V              +     +LYG  LR+SE L++  +NI  ++   
Sbjct: 10  LTKDELKLFIDSVDSK----------EHKLFFKMLYGMALRVSELLTIEVKNINLNEGVC 59

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           ++     +   + ++P   + + E   +   D +L     LF+       N       ++
Sbjct: 60  KLLDTKTETFQICVIP---EWLNEDIFVHIIDNDLKDNDRLFKFK-----NRTYAWELVK 111

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +  +   +    + HT R S A HLL++G  L  +   L H  ++TT  Y  +   +   
Sbjct: 112 KYTKDAKIHKEFSTHTFRRSRALHLLNDGVPLEKVSKYLRHKSINTTMHYLKITVDDIKK 171

Query: 309 WMMEI 313
            + +I
Sbjct: 172 ELAKI 176


>gi|107022005|ref|YP_620332.1| phage integrase [Burkholderia cenocepacia AU 1054]
 gi|116688949|ref|YP_834572.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
 gi|105892194|gb|ABF75359.1| phage integrase [Burkholderia cenocepacia AU 1054]
 gi|116647038|gb|ABK07679.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
          Length = 381

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 57/273 (20%), Positives = 100/273 (36%), Gaps = 28/273 (10%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           + +L+       ++KR+ +     ++K  +  +++ +  + K        I+    L+ S
Sbjct: 111 LHELTTRYFDLLVAKRKAEGDKPATIKHEIGLLRATINEMAKLGFKVSREIV-FPELRTS 169

Query: 123 NSLPRALN---EKQALTLVDNVLLHT--------SHETKWIDARNSAILYLLYGCGLRIS 171
             L R L+   E   L  +D   L          + E       N  I   L   G R S
Sbjct: 170 YRL-RYLDSNDESALLRELDPERLRARINASKPQTPEMTRNMQDNYDITVFLLDTGCRYS 228

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231
           E  +     I  D  T+ +     +   V  + S  +AIL       ++     Q  +F 
Sbjct: 229 EVANTPWSAINLDACTISLYRSKVRNEDVLHMTSRLEAILR----RRWEERRTGQRYVFE 284

Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPL---------STTAHTLRHSFATHLLSNGGDLRS 282
              G     G   + I++     GL             T HTLRH+FA+ L+  G  L  
Sbjct: 285 DRTGN--ERGYSTKSIKKAIERAGLNDPVLVKERGGRVTLHTLRHTFASKLVKAGVSLYE 342

Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315
           +  +LGH     TQ Y +++  +     ++I D
Sbjct: 343 VSVLLGHSDPKMTQRYAHLSPNDASRKAVKIID 375


>gi|322390689|ref|ZP_08064202.1| phage integrase family site-specific recombinase [Streptococcus
           parasanguinis ATCC 903]
 gi|321142595|gb|EFX38060.1| phage integrase family site-specific recombinase [Streptococcus
           parasanguinis ATCC 903]
          Length = 377

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/325 (14%), Positives = 112/325 (34%), Gaps = 53/325 (16%)

Query: 12  FELLKERQNWLQNLEIERGLS-KLTLQS-YECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69
           F+LL+E      +L+  R +S   T ++ YE   + +                + +L+Y 
Sbjct: 67  FDLLEE-----DDLKNGRKVSYTSTQRNNYERHIKPYFKN-----------TNLNKLTYD 110

Query: 70  EIRAFISKRRTQK--------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            I  F    +T+         +   ++ + L  +K       ++ +  ++ + N+R L  
Sbjct: 111 HIFEFREYLKTKPKKQNENEVLSYNTINKILILLKKIFDTGIRKSLIDKNPVENLRKLPI 170

Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181
                +  + ++     + +        +  +        + +  G+R+ E L+L   +I
Sbjct: 171 RKPNIKFWSIEEFTRFRELI--------RDDEISYDLFFVIAFFTGMRMGEILALNWNDI 222

Query: 182 MDDQSTLRIQGK---------------GDKIRIVPLLPSVRKAILEYYDLCPFDLN---L 223
               +T+ +                      R + +   + + + ++       L     
Sbjct: 223 NLLTNTIYVTKTVYFVNNTSYINTTKTRSGTRNITINQKLAEMLKDWKVKQKEKLEEFTK 282

Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
           N +           +   +  +  +Q+            H LRHS A+ L++ G D   +
Sbjct: 283 NTEELQIIQSTPITITKNMIDKKFKQILERDKDLKKIRIHDLRHSHASLLINQGEDYLVV 342

Query: 284 QSILGHFRLSTT-QIYTNVNSKNGG 307
           +  LGH  ++TT   Y+++      
Sbjct: 343 KERLGHASITTTIDTYSHLYPSKQK 367


>gi|260171385|ref|ZP_05757797.1| transposase [Bacteroides sp. D2]
 gi|315919698|ref|ZP_07915938.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693573|gb|EFS30408.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 308

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 55/269 (20%), Positives = 100/269 (37%), Gaps = 32/269 (11%)

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124
           +L   +++ F  ++    +  +S+K  L  +K  LK+  K                    
Sbjct: 47  ELEENKVQEFALQKINNGLSKKSIKDILIVLKMILKFGVKHGYLNYKEWE---------- 96

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI---LYLLYGCGLRISEALSLTPQNI 181
             R   E +   L    + H      +I    +     +Y+    GLRI E  +LT  +I
Sbjct: 97  -IRFPTEDEKQHLEVLSISHQKRIMSFIQEHFTFKNLGIYICLSTGLRIGEVCALTWDDI 155

Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR---------- 231
             +   + I+   ++I I+       + I+           + I   L R          
Sbjct: 156 NIELGIISIKRTIERIYIIDGEKRHTELIINTPKTKNSIREIPITKELIRILKPLKKIVN 215

Query: 232 ------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
                     KP  P  ++ Y ++L + L +P     H LRHSFAT  + +  D +++  
Sbjct: 216 GNYYILTNEEKPTEPRTYRNYYKKLMKDLNIP-ELKFHGLRHSFATRCIESNCDYKTVSV 274

Query: 286 ILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           ILGH  +STT  +Y + N +     +  +
Sbjct: 275 ILGHSNISTTLDLYVHPNMEQKKKCIDRM 303


>gi|89147338|gb|ABD62531.1| integrase [uncultured bacterium]
          Length = 163

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/113 (31%), Positives = 50/113 (44%)

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           R  G+G       L     +A   +     F        P     R   L      R ++
Sbjct: 50  RATGRGGVYLPHALERKYPRAGESWAWFWVFPSAKLSVDPQTGVERRHHLFEERLNRQLK 109

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +     G+    + HTLRHSFATH L  G D+R++Q +LGH  +STT IYT+V
Sbjct: 110 KAVVQAGIAKHVSVHTLRHSFATHSLQAGTDIRTVQELLGHSDVSTTMIYTHV 162


>gi|300214620|gb|ADJ79036.1| DNA integration/recombination/inversion protein [Lactobacillus
           salivarius CECT 5713]
          Length = 305

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 55/283 (19%), Positives = 106/283 (37%), Gaps = 28/283 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQ-TIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           S+ T+  Y         +LA    +K+     + Q++  E +  I++         ++  
Sbjct: 25  SERTIDKY---------WLAHRHLKKLAPDLELGQITRIEYQKIINEFAETHEKATTMDF 75

Query: 91  SLSGIKSFLKYLKKRKITTESNILN--MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
               +KS +       +          ++  K      + L+E +   L+ ++ L T   
Sbjct: 76  HHQ-LKSSILDAFDDGLIDRDPTRKTVVKGKKPGKKKQKYLSEFELKMLLRHLHLGTEPN 134

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI------RIVPL 202
             W       ++ L+   GLR  EAL LT ++   +   + I    D        +    
Sbjct: 135 LDW-------LILLVAKTGLRFGEALGLTKEDFDFENQIINISKTWDYKAARGGFKSTKN 187

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
             S+RK  L++     F+  L            K +        ++Q    L +P+  + 
Sbjct: 188 KSSIRKVQLDWKLCMQFNTLLRDFPNGTPIFVKKRVFNSTVNNRLKQYCEELAIPI-ISI 246

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI-YTNVNSK 304
           H LRH+ A+ LL  G  + S+   LGH  ++TTQ  Y ++  +
Sbjct: 247 HGLRHTHASMLLFAGVSIASVAKRLGHADMTTTQQTYLHIIQE 289


>gi|218554145|ref|YP_002387058.1| putative defective integrase; Qin prophage [Escherichia coli IAI1]
 gi|218360913|emb|CAQ98485.1| putative defective integrase; Qin prophage [Escherichia coli IAI1]
          Length = 431

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/320 (12%), Positives = 100/320 (31%), Gaps = 53/320 (16%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT-EEKITIQTIRQLSYTEIRAFISK 77
           + +L   E E  ++K +L +Y    +  L  +        I  + + ++    +  +   
Sbjct: 91  EKFLALKETE--VAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLTGYQIP 148

Query: 78  RRTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +             ++   ++ + +  ++        ++    +  LK+S ++P  L+ +
Sbjct: 149 KSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPEPLSRE 208

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + + L+D      +            +  +    G+R  E  +L  ++I     T+ I+ 
Sbjct: 209 EFIRLIDACRNQQAKN----------LWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRR 258

Query: 193 KGDKIRIVPLLPSV--------------------------RKAILEYYDLCPFDLNLNIQ 226
              K R                                  ++ I++ +            
Sbjct: 259 NLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKC 318

Query: 227 LPLF-------RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
             +F           G        ++      +  GL    +  + RH++A   L+ G +
Sbjct: 319 TFVFQPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQS-RHTYACWSLTAGAN 377

Query: 280 LRSIQSILGHFRLSTT-QIY 298
              I + +GH       Q+Y
Sbjct: 378 PAFIANQMGHADAQMVFQVY 397


>gi|191165897|ref|ZP_03027734.1| site-specific recombinase, phage integrase family [Escherichia coli
           B7A]
 gi|190904028|gb|EDV63740.1| site-specific recombinase, phage integrase family [Escherichia coli
           B7A]
          Length = 426

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/320 (12%), Positives = 101/320 (31%), Gaps = 53/320 (16%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT-EEKITIQTIRQLSYTEIRAFISK 77
           + +L   E E  ++K +L +Y    +  L  +        I  + + ++    +  +   
Sbjct: 86  EKFLALKETE--VAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLTGYQIP 143

Query: 78  RRTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +             ++   ++ + +  ++        ++    +  LK+S ++P  L+ +
Sbjct: 144 KSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPDPLSRE 203

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + + L+D      +            +  +    G+R  E  +L  ++I     T+ I+ 
Sbjct: 204 EFIRLIDACRNQQAKN----------LWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRR 253

Query: 193 KGDKIRIVPLLPSV--------------------------RKAILEYYDLCPFDLNLNIQ 226
              K R                                  ++ I++ +         +  
Sbjct: 254 NLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKHKC 313

Query: 227 LPLF-------RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
             +F           G        ++      +  GL    +  + RH++A   L+ G +
Sbjct: 314 TFVFQPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQS-RHTYACWSLTAGAN 372

Query: 280 LRSIQSILGHFRLSTT-QIY 298
              I + +GH       Q+Y
Sbjct: 373 PAFIANQMGHADAQMVFQVY 392


>gi|332980708|ref|YP_004462149.1| integrase family protein [Mahella australiensis 50-1 BON]
 gi|332698386|gb|AEE95327.1| integrase family protein [Mahella australiensis 50-1 BON]
          Length = 371

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 94/286 (32%), Gaps = 33/286 (11%)

Query: 50  LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109
            A + +  +    + +L    I++F S    Q +   ++ +    +   LK+    +I  
Sbjct: 91  FAAHIKTNLGSIMLPKLKPAHIQSFYSTLLEQGLSKSTVLKVHRMLHLALKHAVNWQIII 150

Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169
            +    +   +         +       +              D      + L    G+R
Sbjct: 151 SNPADAVTPPRPDKVEMHVWDMNTVNQFL----------NDVSDEPIYMPVLLALQTGMR 200

Query: 170 ISEALSLTPQNIMDDQSTLRIQ---------------GKGDKIRIVPLLPSVRKAILEY- 213
             E   L  +++   Q TL ++                     R + L+    +A+ E+ 
Sbjct: 201 EGEICGLKWEDVNLKQGTLTVKQALQRINGILTIKDTKTAKSKRTIALMDYTVQALKEHK 260

Query: 214 -----YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
                  L       + Q  +     G+P +P        +L   L  P     H LRH+
Sbjct: 261 KQQNTVKLMMGPAAYHDQGFVCAWDDGRPYDPHYVGEKFTELIDKLDYPK-IRFHDLRHT 319

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
            AT LL  G + + +   LGH ++S T   Y++V      + + ++
Sbjct: 320 HATMLLQQGVNPKIVSERLGHSQVSITLDTYSHVLPNMQKEAITKL 365


>gi|325288277|ref|YP_004264458.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324963678|gb|ADY54457.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 427

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 56/304 (18%), Positives = 104/304 (34%), Gaps = 46/304 (15%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           TL+++     +  +  A + E + T+Q I   +   +  +   + ++ +   S+ +  + 
Sbjct: 121 TLKTWAGYLEKVELLSAVFREYEYTVQDI---TPENLSEYYGMKLSKGLKKSSVTKDYTV 177

Query: 95  IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154
           I   L Y   +K+ T +    +   K        LN  Q    ++ +             
Sbjct: 178 INQALNYAIGKKLITVNPNTAITLGKLEKYNAATLNADQMQQYLEFI------------Q 225

Query: 155 RNSAILYLLYG--CGLRISEALSLTPQNIMDDQSTLRIQGK------------------- 193
            +   + +L+G   G+R SE + L            R                       
Sbjct: 226 SDIIEIPVLFGGFYGMRRSECVGLRESQFDFRHGFFRANHTVVKVKIDGVEIYVPSDKLK 285

Query: 194 -GDKIRIVPLLPSVRKAI-------LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
                R  PL+  V + I        E   LC      +    L     GK L+P     
Sbjct: 286 TDTSNRTYPLIDYVEQRIKAKIEENREMRKLCGNSYCNDWLGYLCVNQLGKILDPDYITT 345

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304
             +++    GLP     H LRHS    +++N   L  I+  +GH  + TT  IY ++  K
Sbjct: 346 RHKRMLEKAGLP-HVRFHDLRHSCVGLMMANEVPLERIRDWVGHSDIRTTANIYGHLEYK 404

Query: 305 NGGD 308
           +  +
Sbjct: 405 SKKE 408


>gi|196251081|ref|ZP_03149762.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|196209453|gb|EDY04231.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 377

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/272 (18%), Positives = 100/272 (36%), Gaps = 29/272 (10%)

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
           EE      +++L+    + FI++    +  + ++K+  + IK  +K   +  +       
Sbjct: 93  EEYFPGVKMKELTRDMYQKFINEIAETRTTE-TVKKRHTYIKECIKAAIEEGVIIRDPTY 151

Query: 115 NMRNLKKSNSLP---RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
            +    K        + LN ++A  L+  +      +       +  I+      G R S
Sbjct: 152 KVVVKGKKKGKDEELKYLNYQEAKQLIAEI-----KKDMRPKYISRYIILFALATGARFS 206

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKI--------------RIVPLLPSVRKAILEYYD-- 215
           E L LT   I      + I    D                R + +     K + E     
Sbjct: 207 EILGLTWDCIDFKNRMVTINKTWDYKFTNDFADTKTYSSKRTIKIDEDTCKILKELRKAQ 266

Query: 216 --LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273
             +       N +  +F   + + ++     + ++ L R LGL    T H+LRH+ A+ L
Sbjct: 267 NEVAMKTGLRNEKNLVFVNTKMELVSNNAVNKTLKTLCRKLGL-KEVTMHSLRHTHASML 325

Query: 274 LSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304
           L    +++ I   LGH  +  T Q Y+++  +
Sbjct: 326 LYRKANIKYISKRLGHKDIGITLQTYSHILDE 357


>gi|189468269|ref|ZP_03017054.1| hypothetical protein BACINT_04666 [Bacteroides intestinalis DSM
           17393]
 gi|189436533|gb|EDV05518.1| hypothetical protein BACINT_04666 [Bacteroides intestinalis DSM
           17393]
          Length = 432

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 112/283 (39%), Gaps = 26/283 (9%)

Query: 35  TLQSY-ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKRSL 92
           T ++Y   +  +  +      E K++   +++++ T I  F    R + ++ + +  + +
Sbjct: 150 TQKTYSRYELTKQRMIEFLQKEYKLSDIPVKEITVTHIENFYLYLRQECEVSNNTAMKFV 209

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
               + L + +K  ++      N R      +    L +++  T+      +   ++K +
Sbjct: 210 QRFHTILLFAQKSGLSFIDPFGNFR-FNFDKTDRGYLTQEEIDTIY-----YKEFKSKRL 263

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNI----MDDQSTLRIQGKGDKIRIVPLLPSVRK 208
           +    A ++  Y  GL   +  +L+ ++I       +  ++ +GK      +PLL     
Sbjct: 264 EHVRDAFIFSCY-TGLPYCDIYTLSSEDIKIGVDGKKWIMKDRGKTGVESFIPLLQIPLD 322

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
            + +Y            +  L  G     ++      Y+ ++     +    T H  RHS
Sbjct: 323 ILAKY------------EGKLKDGRLLPVISNQKMNEYLAEIAAICQINKRITYHLARHS 370

Query: 269 FATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310
           FAT   L+ G  + S+  +LGH  + TTQIY  V  +     M
Sbjct: 371 FATEICLTKGVPIESVSKMLGHTNIQTTQIYARVVDRKLSHDM 413


>gi|41179288|ref|NP_958506.1| putative integrase [Lactobacillus prophage Lj928]
 gi|42519337|ref|NP_965267.1| Lj928 prophage integrase [Lactobacillus johnsonii NCC 533]
 gi|38731417|gb|AAR27347.1| putative integrase [Lactobacillus prophage Lj928]
 gi|41583625|gb|AAS09233.1| Lj928 prophage integrase [Lactobacillus prophage Lj928]
          Length = 391

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 56/281 (19%), Positives = 106/281 (37%), Gaps = 36/281 (12%)

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
           I +++  E++ +  ++  Q +  R      + +    +Y  +    +E+ +  +   KK+
Sbjct: 112 IDKITVAELQKWADRKAKQIVKYRDAINEFNAL---FEYGIRLNYVSENPLKRIIIPKKT 168

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
           +  PR   E    T   + L       K           LL   GLR SEAL+LT  +I 
Sbjct: 169 SR-PRRDTEHNVYT--QDELNQFLEVAKDYGLVPYTYFKLLSATGLRKSEALALTWSDIN 225

Query: 183 DDQSTLRIQGK----------------GDKIRIVPLLPSVRKAILEYYD----LCPFDLN 222
               TL +                       RI+P+   +++ +++Y      +     +
Sbjct: 226 LTAGTLSVNKTLAYGLNGKTIIQPPKSPKSKRILPISDGLKEVLIDYKRKQKIISKELFH 285

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRY--IRQLRRYLGLP------LSTTAHTLRHSFATHLL 274
            N    L      + L     + +    +  +   L          T H  RH+FAT L+
Sbjct: 286 TNKGTYLRISKPDQWLKSIYAKDHEEKAEYAKKYNLKEPQPDLRHITVHGFRHTFATLLI 345

Query: 275 SN-GGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           +      +++Q +LGH  +  T  IYT++N KN  D +  +
Sbjct: 346 AETNVKPKTVQMLLGHENIQMTLDIYTHINKKNTEDAVNAL 386


>gi|320197761|gb|EFW72369.1| putative integrase [Escherichia coli EC4100B]
          Length = 426

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/320 (12%), Positives = 100/320 (31%), Gaps = 53/320 (16%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT-EEKITIQTIRQLSYTEIRAFISK 77
           + +L   E E  ++K +L +Y    +  L  +        I  + + ++    +  +   
Sbjct: 86  EKFLALKETE--VAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLTGYQIP 143

Query: 78  RRTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +             ++   ++ + +  ++        ++    +  LK+S ++P  L+ +
Sbjct: 144 KSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPDPLSRE 203

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + + L+D      +            +  +    G+R  E  +L  ++I     T+ I+ 
Sbjct: 204 EFIRLIDACRNQQAKN----------LWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRR 253

Query: 193 KGDKIRIVPLLPSV--------------------------RKAILEYYDLCPFDLNLNIQ 226
              K R                                  ++ I++ +            
Sbjct: 254 NLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKC 313

Query: 227 LPLF-------RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
             +F           G        ++      +  GL    +  + RH++A   L+ G +
Sbjct: 314 TFVFQPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQS-RHTYACWSLTAGAN 372

Query: 280 LRSIQSILGHFRLSTT-QIY 298
              I + +GH       Q+Y
Sbjct: 373 PAFIANQMGHADAQMVFQVY 392


>gi|303328057|ref|ZP_07358496.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
 gi|302861883|gb|EFL84818.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
          Length = 380

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 53/270 (19%), Positives = 97/270 (35%), Gaps = 31/270 (11%)

Query: 56  EKITIQTIRQLSYTEIRAFI---SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT--E 110
           E I+  +I +L     +  +    +R    +    + + +S +   +    +  +    +
Sbjct: 126 ENISASSITKLDVENFKNSLLECHQRNGSNLSRSYINKIISLLGRLINRGIEWDMINVAK 185

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
           + I +           R L   +A  ++D          + I         +    G+RI
Sbjct: 186 NPISHTLFSDADKKRERFLTSSEASKILD--------GLRCIYCDAYIFAKISLFTGMRI 237

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230
           SE  S+  QNI  D   + I+GK             R A +    +  F    N   P +
Sbjct: 238 SEIASINKQNINIDARIVHIEGKTGF----------RSAYIPDNLISLFTGLKNRDHPKY 287

Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPL-------STTAHTLRHSFATHLLSNGGDLRSI 283
            G R    +     RY + +   +GL             HTLRH+F + L   G  L +I
Sbjct: 288 -GERCFDKDVSTISRYFKMVVDAIGLNSNVEDSRYKVVFHTLRHTFCSWLAMKGVALYTI 346

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
             ++GH +L  T+ Y  ++     D + +I
Sbjct: 347 GELVGHKKLEMTKRYAKLSPDTKRDALNKI 376


>gi|237811004|ref|YP_002895455.1| phage integrase family protein [Burkholderia pseudomallei MSHR346]
 gi|237503562|gb|ACQ95880.1| phage integrase family protein [Burkholderia pseudomallei MSHR346]
          Length = 349

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 95/252 (37%), Gaps = 12/252 (4%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT--TESNILNMRNL 119
           ++  ++   +  +   R  +   + +++  L+ +        K        + + N+R  
Sbjct: 99  SLAAVTPDLVSRYRDDRLARGKANNTVRLELALLGHLFNVAIKEWHIGLIFNPVANIRKP 158

Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
                  R L+E +   L+  V  H++    W       I+ L    G+R SE L L   
Sbjct: 159 SPGEGRNRRLSESEQAKLLATVDQHSNPMLGW-------IVRLAIETGMRQSEILGLRRG 211

Query: 180 NIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238
            +  ++  +R+   K +  R VPL       +          ++ ++      G  GK  
Sbjct: 212 QVDLERRVVRLTDTKNNAARTVPLTKLAALVLQNALGNPVRPIDTDLVFFGEPGRDGKR- 270

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
               F +    L++  GL +    H LRH   + L+  G   + + SI GH  +   + Y
Sbjct: 271 RAYQFTKVWNGLKKRTGL-IDFRFHDLRHEAVSRLVEAGLTDQEVASISGHKSMQMLRRY 329

Query: 299 TNVNSKNGGDWM 310
           T++ +++    +
Sbjct: 330 THLRAEDLVSKL 341


>gi|212695081|ref|ZP_03303209.1| hypothetical protein BACDOR_04619 [Bacteroides dorei DSM 17855]
 gi|212662397|gb|EEB22971.1| hypothetical protein BACDOR_04619 [Bacteroides dorei DSM 17855]
          Length = 435

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 56/285 (19%), Positives = 99/285 (34%), Gaps = 33/285 (11%)

Query: 35  TLQSYECDTRQFLIFLAFYTE-EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93
           T  SY    +    F+      E IT++++ +  Y +   F+   +   +  +++   L 
Sbjct: 145 THASYLRSYKHLAAFVKDKKGVEDITLRSLDKPFYDDFELFL--CKDCGMKPKTVHEHLY 202

Query: 94  GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
            +K   +    +          +          R +  +    L++  +       K   
Sbjct: 203 RLKKMTRRAVSQGTLRRDPYCRLH-PALPRRKSRHMKLEDLKKLMETSV------EKPQL 255

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRI-QGKGDKIRIVPLLPSVRKA 209
                +       GL  ++   LT  +I    D    + I + K D    V LL    + 
Sbjct: 256 QFVRDMFIFSTFTGLAYADLKRLTTSDITRADDGSWWIHICRQKTDTPSSVRLLDIPLRI 315

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG--LPLSTTAHTLRH 267
           I +Y D    D   N+                  + Y   L R LG       T H  RH
Sbjct: 316 IEKYRDQRQGDKVFNLYA----------------RGYFIMLTRELGNVYGFDLTFHQARH 359

Query: 268 SFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311
           +F TH+ LS G  + ++  ++GH  +STTQ+Y  V  K   + M 
Sbjct: 360 NFGTHVTLSLGVPIETVSRMMGHMSISTTQLYAQVTDKKVDEDMK 404


>gi|167771160|ref|ZP_02443213.1| hypothetical protein ANACOL_02515 [Anaerotruncus colihominis DSM
           17241]
 gi|167666830|gb|EDS10960.1| hypothetical protein ANACOL_02515 [Anaerotruncus colihominis DSM
           17241]
          Length = 322

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 88/251 (35%), Gaps = 28/251 (11%)

Query: 63  IRQLSYTEIRAFISKRRTQK-----------IGDRSLKRSLSGIKSFLKYLKKRKITTES 111
           + +L+  ++  F+ +RR              +G  +++     ++  L    +  +  ++
Sbjct: 44  LSELTTEQVGDFLEERRRYGGHRLESPEYPGLGKHTMRHIHRLLQQCLDQAMRDGLIADN 103

Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171
                R  K        L   +    +D                +  +  L    GLR  
Sbjct: 104 PARAFRYPKPKKVSANVLTPAEVEDYLDAAAR----------LGHLPMFLLALTVGLRQG 153

Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI----LEYYDLCPFDLNLNIQL 227
           E ++L   ++   + TL I  K    R   +       I     E       +   +++ 
Sbjct: 154 ELIALKWSDLDTKERTLTITEKRSVERRELVEYEGGTRIVSLTEEVVKFLCLEHAKHLRS 213

Query: 228 PLFRGIR--GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
           PL        KP +P + +R   ++ R  GL        LRH+ A   L NG D + +  
Sbjct: 214 PLMFMHPATQKPYSPQMVRRLHNEIIREAGLD-HIRFADLRHTCAVLSLQNGMDAKEVSQ 272

Query: 286 ILGHFRLSTTQ 296
           +LGHFR + T+
Sbjct: 273 MLGHFRTAMTR 283


>gi|145296000|ref|YP_001138821.1| hypothetical protein cgR_1924 [Corynebacterium glutamicum R]
 gi|57158158|dbj|BAD84127.1| similar to integrase [Corynebacterium glutamicum]
 gi|140845920|dbj|BAF54919.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 393

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 106/275 (38%), Gaps = 29/275 (10%)

Query: 62  TIRQLSYTEIRAFISKRRTQK-------IGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
            I  +  ++I ++  K  T +       + + +   ++  + S LK  ++ ++      +
Sbjct: 101 PISAVKTSDILSWRKKLLTGRDWLDGSTLSESTTANTVGQLMSVLKRAQQDRMILVIPTV 160

Query: 115 NMRN--LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172
            +      ++ S    L E+Q  ++     + T            +++ +  G GLR+SE
Sbjct: 161 RVPKSAPARAISRQELLTEEQIQSI--AHAVATPKGHYKARPWLKSMIRVAAGSGLRVSE 218

Query: 173 ALSLTPQNIMDDQSTLRIQGKGDK------------IRIVPLLPSVRKAILEYYDLCP-F 219
             +L P+++   + T+ +  +  +            +R +P+   V   I+E+    P  
Sbjct: 219 ICALRPEDVNFLRHTISVSRQMGRGGVAKTPKSKASVRTIPVARWVTTEIVEWIKENPVG 278

Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
           +       P+  G  G+P +       +    +  GL    + H  RH FA+ L+  G  
Sbjct: 279 ESGWIWTRPV--GEPGRPFDRSAVTHGLLPAIKAHGLRQH-SFHDFRHFFASVLIFKGVP 335

Query: 280 LRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
             ++Q  LGH   S T   Y ++      D M + 
Sbjct: 336 ANAVQDALGHASASVTWDTYAHI-FPGQDDVMRDA 369


>gi|323947987|gb|EGB43981.1| phage integrase [Escherichia coli H120]
          Length = 426

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/320 (12%), Positives = 101/320 (31%), Gaps = 53/320 (16%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT-EEKITIQTIRQLSYTEIRAFISK 77
           + +L   E E  ++K +L +Y    +  L  +        I  + + ++    +  +   
Sbjct: 86  EKFLALKETE--VAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLTGYQIP 143

Query: 78  RRTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +             ++   ++ + +  ++        ++    +  LK+S ++P  L+ +
Sbjct: 144 KSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPDPLSRE 203

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + + L+D      +            +  +    G+R  E  +L  ++I     T+ I+ 
Sbjct: 204 EFIRLIDACRNQQAKN----------LWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRR 253

Query: 193 KGDKIRIVPLLPSV--------------------------RKAILEYYDLCPFDLNLNIQ 226
              K R                                  ++ I++ +         +  
Sbjct: 254 NLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKHKC 313

Query: 227 LPLF-------RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
             +F           G        ++      +  GL    +  + RH++A   L+ G +
Sbjct: 314 TFVFQPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQS-RHTYACWSLTAGAN 372

Query: 280 LRSIQSILGHFRLSTT-QIY 298
              I + +GH       Q+Y
Sbjct: 373 PAFIANQMGHADAQMVFQVY 392


>gi|312132706|ref|YP_004000045.1| phage integrase family protein [Bifidobacterium longum subsp.
           longum BBMN68]
 gi|311773666|gb|ADQ03154.1| Phage integrase family Protein [Bifidobacterium longum subsp.
           longum BBMN68]
          Length = 393

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/342 (14%), Positives = 105/342 (30%), Gaps = 62/342 (18%)

Query: 7   PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66
           P   S  L+   + W  +   E  L   + +SYE    +              I ++   
Sbjct: 63  PNSPSPRLMDWLETW-YHERAEANLRPNSRRSYENAIVRLNKIAGARR-----INSLGHK 116

Query: 67  SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126
              +++  +     +    ++   + S +K+ L+  +   +   +    +R +       
Sbjct: 117 DMADVQDGL-----KCYSPKTATLTWSVLKNALEAARDENLIRRNPAKMVRPVSGRRRPM 171

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ------- 179
           + L+  QA  L+              D        L +  GLR  E L LT         
Sbjct: 172 KVLSPAQAAELIKAE----------PDPMWRLNWLLAFATGLRQGERLGLTMDELTTLNG 221

Query: 180 -------------------NI-------MDDQSTLRIQGKGDK-IRIVPLLPSVRKAILE 212
                              +                   K D   RIV L   +  A+ E
Sbjct: 222 RRALVIDHQLQRVPDSRRADWPLGEDVTDLGNGFWLCPPKTDSGERIVVLDDVMCGALDE 281

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-----LSTTAHTLRH 267
           +  +       +    LF   RG P++  +   +  +    +G+      +    H+ RH
Sbjct: 282 WLAIRKKKGVDSPM--LFVTGRGTPIDRRIEYFHWDKALLRIGIANGEDGVRLRPHSARH 339

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
           +  T   + G    +  +++GH   +   +Y + +++   + 
Sbjct: 340 TADTLFANAGVPESARLALMGHSDGAMDNVYLHADTEALLEA 381


>gi|150403371|ref|YP_001330665.1| phage integrase family protein [Methanococcus maripaludis C7]
 gi|150034401|gb|ABR66514.1| phage integrase family protein [Methanococcus maripaludis C7]
          Length = 182

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 74/185 (40%), Gaps = 18/185 (9%)

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188
           L + +    +D+V              +     +LYG  LR+SE L++  +NI  ++   
Sbjct: 10  LTKDELKLFIDSVDSK----------EHKLFFKMLYGMALRVSELLTIEVKNINLNEGVC 59

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           ++     +   + ++P   + + E       D  LN    LF+       N       ++
Sbjct: 60  KLLDTKTETFQICVIP---EWLNEDVFGHIVDNKLNDNDRLFKFK-----NRTYAWELVK 111

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
           +  +   +    + HT R S A HLL++G  L  +   L H  ++TT  Y  +   +   
Sbjct: 112 RYTKDAKIHKEFSTHTFRRSRALHLLNDGVPLEKVSKYLRHKSINTTMHYLKITVDDIKK 171

Query: 309 WMMEI 313
            +++I
Sbjct: 172 ELVKI 176


>gi|291282710|ref|YP_003499528.1| Integrase family protein [Escherichia coli O55:H7 str. CB9615]
 gi|290762583|gb|ADD56544.1| Integrase family protein [Escherichia coli O55:H7 str. CB9615]
          Length = 431

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/320 (12%), Positives = 100/320 (31%), Gaps = 53/320 (16%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT-EEKITIQTIRQLSYTEIRAFISK 77
           + +L   E E  ++K +L +Y    +  L  +        I  + +  +    +  +   
Sbjct: 91  EKFLALKETE--VAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLAVRKELLTGYQIP 148

Query: 78  RRTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +             ++   ++ + +  ++       T++    +  LK+S ++P  L+ +
Sbjct: 149 KSNYIVTQPGRSAVTVNNYMTNLYAVFQFGVDNGYLTDNPFKGISPLKESRTIPDPLSRE 208

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + + L+D      +            +  +    G+R  E  +L  ++I     T+ I+ 
Sbjct: 209 EFIRLIDACRNQQAKN----------LWCVSVYTGIRPGELCALGWEDIDLKNGTMMIRR 258

Query: 193 KGDKIRIVPLLPSV--------------------------RKAILEYYDLCPFDLNLNIQ 226
              K R                                  ++ I++ +            
Sbjct: 259 NLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREFGRTEKQKC 318

Query: 227 LPLF-------RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
             +F           G        ++      +  GL    +  + RH++A   L+ G +
Sbjct: 319 TFVFQPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQS-RHTYACWSLTAGAN 377

Query: 280 LRSIQSILGHFRLSTT-QIY 298
              I + +GH       Q+Y
Sbjct: 378 PAFIANQMGHADAQMVFQVY 397


>gi|89147506|gb|ABD62613.1| integrase [uncultured bacterium]
          Length = 163

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 45/93 (48%)

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           A  E      F        P         +     Q+ ++   R +G+      HT+RHS
Sbjct: 70  ACHEIGWQYVFPAKNRSIDPRSGKKMRHHVKESGLQKAVKTAVRQVGIAKRVGCHTMRHS 129

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           +ATHLL NG ++R +Q ++GH  + TT+IYT+V
Sbjct: 130 YATHLLENGTNIRIVQDLMGHKDVKTTEIYTHV 162


>gi|260061988|ref|YP_003195068.1| tyrosine type site-specific recombinase [Robiginitalea biformata
           HTCC2501]
 gi|88783550|gb|EAR14721.1| tyrosine type site-specific recombinase [Robiginitalea biformata
           HTCC2501]
          Length = 423

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 62/302 (20%), Positives = 115/302 (38%), Gaps = 22/302 (7%)

Query: 29  RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87
           +  +  T + Y    +    FL   TE +     + ++    I  F    + T++    S
Sbjct: 126 KEYALGTWKRYNTTFKHTREFLK--TEYRRDDIPMMEVDLRFINRFDYFLKFTKECNHNS 183

Query: 88  LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147
             + ++  K  ++         +    N +  K        L  ++   L++  +     
Sbjct: 184 SLKYINNFKKIIRMGVANDWIQKDPFYNFKA-KFKWVDREYLTREELERLINYEV----- 237

Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRIVPLLPSV 206
            T         +       GL   +   LTP NI+     +L IQ    K R    +P +
Sbjct: 238 -TVPRMGIVKDMFVFCCFTGLAYIDVKKLTPNNIVKHIDGSLWIQSARQKTRSKLGIPLL 296

Query: 207 RKA--ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264
             A  I+E Y+  P  +N +  +P+        L+      Y++++    G+    T H 
Sbjct: 297 PTALEIIEKYEDHPKVVNGDCVIPV--------LSNQRSNAYLKEIADICGITKHLTTHL 348

Query: 265 LRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323
            RH+FAT + LSNG  + ++  +LGH  L  TQ Y  + +K   D M  + +  +    Q
Sbjct: 349 ARHTFATTVTLSNGVPIETVGKLLGHRNLRATQHYAKIVNKKVADDMAALKNVLNLRKPQ 408

Query: 324 KD 325
           K+
Sbjct: 409 KE 410


>gi|332098668|gb|EGJ03634.1| integrase [Shigella boydii 3594-74]
          Length = 262

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 85/248 (34%), Gaps = 27/248 (10%)

Query: 84  GDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
              +    LS IK+ L+  ++  K+  ++ I+ +   K      R L   +A  L+D   
Sbjct: 17  SVATKATHLSFIKALLRAAEREWKMLDKAPIIKVPQPKNKR--IRWLEPHEAQRLIDEC- 73

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRI 199
                          +++      GLR S  ++L  Q I   +    I     K ++   
Sbjct: 74  ----------PEPLKSVVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEESKSNRAIG 123

Query: 200 VPLLPSVRKAI------LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           V L  +  + +         +     +            +R    +     +      R 
Sbjct: 124 VALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAWKA---ALRR 180

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+      H LRH++A+ L+  G  L  +Q + G   +   + Y ++   +  +   +I
Sbjct: 181 AGID-DFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARQI 239

Query: 314 YDQTHPSI 321
               +PS+
Sbjct: 240 DSILNPSV 247


>gi|319901506|ref|YP_004161234.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319416537|gb|ADV43648.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 371

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 59/293 (20%), Positives = 113/293 (38%), Gaps = 38/293 (12%)

Query: 36  LQSYECDTRQFLIFLAF-------YTEEKITIQTIRQLSYTEIRAFISK----RRTQKIG 84
           L+ Y     +      F       +   K T + I      + R ++      RR   I 
Sbjct: 96  LKYYRKQLHKHDQKWEFVYLHFSNFVHGKCTFKEIDIDLCNKFREYLLTAKKLRRNGPIT 155

Query: 85  DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
             S     S  + FLK L +  +   +    +  ++  +++  AL+ ++   L +     
Sbjct: 156 RNSASGYWSTFRGFLKILYRTGMIKTNVNDFLEKIETEDTMKEALSVEELYKLAET---- 211

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----DQSTLRIQGKGDKIRIV 200
                K    + +++   +    LRIS+ L+L  ++I+D     +    I  K     I+
Sbjct: 212 ---PCKKPILKIASLFSCM--TSLRISDILALCWEDIVDYSAGGKCVHIITQKNKAEDII 266

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
           P+     + I           +   +  +F G     L     Q  +++  R  G+  + 
Sbjct: 267 PISEEALELI---------GYSSEKKGLVFNG-----LMRSWTQIPMKEWIRSAGITKNI 312

Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           T H+ + +FAT   + G D+R+IQSI+ H  ++TTQ Y  V   N  +   +I
Sbjct: 313 TFHSYQRTFATLQAATGTDIRTIQSIMAHKSITTTQRYIKVVDANKREASKKI 365


>gi|312890652|ref|ZP_07750186.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311296818|gb|EFQ73953.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 409

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 62/309 (20%), Positives = 117/309 (37%), Gaps = 32/309 (10%)

Query: 22  LQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
           ++    E+G  L   T+++Y    +    FL      K + + + +LSY  I  F    R
Sbjct: 116 IEYHNQEQGQILEPGTMKNYYTTEKYLKEFLKVRF--KTSDKYLSELSYKFITDFEYYLR 173

Query: 80  ----TQKIGDRSLKRSLSGIKSFLKYLKKR---KITTESNILNMRNLKKSNSLPRALNEK 132
                +     +    +  ++ F K +      +    +     + LK        L + 
Sbjct: 174 NRKPEKGQKKLTTNGLMKHLERFCKMVNMAVRLEWIVRNPFHAYQ-LKFDKVNRDYLTKD 232

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTL 188
           +    ++ +     H  +    ++  +       GL   +  +LTP N       +   +
Sbjct: 233 E----LERIESKEFHIVRLQVVQDLFVFSC--YTGLAYVDVYNLTPANLVKGQDGNLWIM 286

Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
             + K +    VPLLP   + I +Y    P  +     LP+        L       Y++
Sbjct: 287 TSRQKTNTAVKVPLLPKALEIIDKY-KGHPQAIAEGKLLPV--------LTNQKLNSYLK 337

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307
           ++     +    T H  RH+FAT + L+NG  + S+  +LGH +LSTTQ+Y  V      
Sbjct: 338 EIADMCAILKPLTFHIARHTFATTITLTNGVPIESVSKMLGHTKLSTTQVYAKVVESKLS 397

Query: 308 DWMMEIYDQ 316
           D M  + ++
Sbjct: 398 DDMARLTER 406


>gi|256957171|ref|ZP_05561342.1| integrase/recombinase [Enterococcus faecalis DS5]
 gi|256947667|gb|EEU64299.1| integrase/recombinase [Enterococcus faecalis DS5]
          Length = 290

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 106/289 (36%), Gaps = 26/289 (8%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T+  Y+     F+            I  I  ++   I  ++    + +   + ++   
Sbjct: 17  ARTINDYQKYMNNFIEVC--------NIVYISDITIDSIYEWLETMGSVQNSTKRIRYK- 67

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             + + L    +     E+    +  +K    +  A  ++    L+  + L     + + 
Sbjct: 68  -ALSAVLNRFFENGWI-ETKFWRVIKIKVDEKVKEAATQEDIDRLLRILDL-----SNYY 120

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKA 209
           + R++  + L++  G+RI+    L  ++I  ++  L + G   K  K+ I+P+   V + 
Sbjct: 121 EFRDACAVLLMFQTGIRINTLSQLENKHINFERKCLILDGSIMKNHKLSILPISDEVLQM 180

Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG------VFQRYIRQLRRYLGLPLSTTAH 263
           I+                     I  +  +          +R + Q  +   +P +   H
Sbjct: 181 IVTLIKQNNLIRESKNVENSLIFITYEGTSIQKSDKSNAIRRRLGQYSKDFVIP-NINPH 239

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
            LR  FAT+LL  G  +  I   LGH  L TT  Y  ++S    + + E
Sbjct: 240 GLRRGFATNLLKKGASVPLISKALGHADLETTSRYLYLDSTEAANELRE 288


>gi|225863775|ref|YP_002749153.1| DNA integration/recombination/invertion protein [Bacillus cereus
           03BB102]
 gi|225788569|gb|ACO28786.1| site-specific recombinase, phage integrase family [Bacillus cereus
           03BB102]
          Length = 368

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 55/315 (17%), Positives = 106/315 (33%), Gaps = 49/315 (15%)

Query: 32  SKLTLQSY-------------ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           SK+TL+ Y             +    ++   +  +    I + ++ +L+   I+      
Sbjct: 61  SKITLKDYLIQWLEIKKMSVEKSSLSRYQSNINKHIIPNIGMISLHKLNVMHIQKCYQSA 120

Query: 79  RTQKIGDRSL---KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135
               I + ++    R L+     L    K+ I   +        KK  S  +   E++  
Sbjct: 121 LNSGIANNTILFQHRILTAA---LNLAVKQNIIPRNPATLAVIPKKEKSSIQTWTEEEVK 177

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195
                 LLH+      I         L    G+R+ E L L  Q++  +  T+ I     
Sbjct: 178 QF----LLHSQESRYHIGY------LLAITTGMRLGEVLGLRWQDVDFNNHTVTINQTLG 227

Query: 196 KI-------------RIVPLLPSVRKAILEYYDLCPFDL-----NLNIQLPLFRGIRGKP 237
                          R +P+   V + + +       D        +    +     G+ 
Sbjct: 228 HDNKIKTSAKNNSSKRTIPIPLEVIEELKKCKLQVNKDKLRIGPAYHDLDLIICNKLGEV 287

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQ 296
                F R+  ++ +  G+      H  RH+ AT LL  G   + +   LGH  +S T +
Sbjct: 288 TTRTTFTRHFDKVIKNAGI-KKIKFHDTRHTHATLLLKQGVHPKVVSERLGHSDISLTLR 346

Query: 297 IYTNVNSKNGGDWMM 311
           +Y++V      D + 
Sbjct: 347 VYSHVLPNIQEDAVK 361


>gi|149017859|ref|ZP_01834318.1| prophage Sa05, site-specific recombinase, phage integrase family
           protein [Streptococcus pneumoniae SP23-BS72]
 gi|147931423|gb|EDK82401.1| prophage Sa05, site-specific recombinase, phage integrase family
           protein [Streptococcus pneumoniae SP23-BS72]
          Length = 388

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/314 (15%), Positives = 112/314 (35%), Gaps = 33/314 (10%)

Query: 22  LQNLEIE--RG-LSKLTLQSYECDT-RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
           L NL +E  +  +   T  +         L     Y  +K+T   I+ +        ++ 
Sbjct: 73  LANLWLESYKNTVKPNTQDNVRKLIDNHILPIFGAYKLDKLTTPLIQSIINE-----LAD 127

Query: 78  RRTQKIGDRSLKR-SLSGI-KSFLKYLKKRKITTESNILNMRNL----KKSNSLPRALNE 131
           +  +      L    +  + K  L+Y    +    +   ++       K      +    
Sbjct: 128 KTNRGEKGAFLHYDKIHALNKRILQYGVTMQAIPSNPARDVVLPRNTQKAKRKKVKHFEN 187

Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191
           ++    +    L      ++     + +   L   G RI+EAL+L+  +I  D + + + 
Sbjct: 188 QELKKFLGY--LDNLDSDRYRYYYETTLYKFLLATGCRINEALALSWSDIDLDNAVVHVT 245

Query: 192 GKGDKI------------RIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKP 237
              ++             R + +  +    + +Y      +       +  +F     + 
Sbjct: 246 KTLNRDLEINSPKSKASYRDIDIDQATVSMLKQYKLRQTKEAWKIGQRESVVFSDFIHEY 305

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ- 296
            +    +R ++   +   +P +   H  RH+ A+ LL++G   + +Q  LGH  LS T  
Sbjct: 306 PSSSRLKRRLQTHFKRADVP-NIGFHGFRHTHASLLLNSGIPYKELQYRLGHSTLSMTMD 364

Query: 297 IYTNVNSKNGGDWM 310
           IY++++ +N    +
Sbjct: 365 IYSHLSKENAKKAV 378


>gi|300715658|ref|YP_003740461.1| phage integrase [Erwinia billingiae Eb661]
 gi|299061494|emb|CAX58608.1| Phage integrase [Erwinia billingiae Eb661]
          Length = 346

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 93/269 (34%), Gaps = 45/269 (16%)

Query: 56  EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR-----SLSGIK-------SFLKYLK 103
           E +       L+  +I  +  KR + ++  +   R     +LS I        S    LK
Sbjct: 94  EALGDPIAADLTPFDISEYRRKRISGEVFSKKRNRFRLPAALSTINIECTYLTSVYNTLK 153

Query: 104 KRKITT-ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162
           K       + I N+   +        LN  +   L+     + + +          I+ +
Sbjct: 154 KLGHIKYPNPIENVPPFRIKEKELSFLNIAEVNALLKACEAYDNADLT-------TIVKI 206

Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
               G R  EAL+L    ++  +       K  K R VP+   +   I            
Sbjct: 207 CLSTGCRWGEALNLRGSQVIPYKINF-AYTKSGKNRSVPITKELFDEIN----------- 254

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDL 280
              Q  LF+             +    + +   +  P     H LRH+FA+H + N G++
Sbjct: 255 -KKQGALFKD----------VTKRFNTVLKMANIELPHGQKTHVLRHTFASHFMMNSGNI 303

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDW 309
             ++ ILGH  +  T IY + +  +  D 
Sbjct: 304 LVLRQILGHTDIKMTMIYAHFSPDHLEDA 332


>gi|293395226|ref|ZP_06639512.1| shufflon-specific DNA recombinase [Serratia odorifera DSM 4582]
 gi|291422403|gb|EFE95646.1| shufflon-specific DNA recombinase [Serratia odorifera DSM 4582]
          Length = 345

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 102/263 (38%), Gaps = 16/263 (6%)

Query: 55  EEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114
           ++     ++ +++   +  +  +R  +K  + +++  L  +  FL++    K    ++++
Sbjct: 93  DKHFGSTSLEKITSENVATYKVERL-KKAANGTVRLELQLLSRFLRWAASEKGVACNDVV 151

Query: 115 N-MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR--NSAILYLLYGCGLRIS 171
             +R  +      + L   Q   +++ V    S  +  +       AI+ L +   +R  
Sbjct: 152 KPVRLPEAGKPRDKILTPLQYQMILERVETCRSKLSGGLQGMSEAKAIIILAWETAMRRG 211

Query: 172 EALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228
           E L+LTP  I   Q  + +   Q K  + R VPL  +    +          L    +  
Sbjct: 212 EILALTPAMIDFRQRVIHLADHQTKNAEARDVPLSSTALDLLK--------SLCEGKEEE 263

Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288
            +R  +   L P    +  R+  R   +      H+LRH+  T     G +   +Q I G
Sbjct: 264 RYRHTKLFSLRPYSVSQAFRRACREARIE-GVCFHSLRHTCITRYAEKGLNTIQLQCISG 322

Query: 289 HFRLSTTQIYTNVNSKNGGDWMM 311
           H  ++    Y+++ + +    M 
Sbjct: 323 HKDITMLARYSHIKASSVAALME 345


>gi|237723556|ref|ZP_04554037.1| tyrosine type site-specific recombinase [Bacteroides sp. D4]
 gi|229438107|gb|EEO48184.1| tyrosine type site-specific recombinase [Bacteroides dorei
           5_1_36/D4]
          Length = 399

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 52/310 (16%), Positives = 120/310 (38%), Gaps = 31/310 (10%)

Query: 16  KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75
           +  + ++Q L+ E        + Y    +Q    L  Y +  + I     +    ++ + 
Sbjct: 108 EAFKEYIQLLQDENR------RGYMLSVKQVYNSLIKYNKH-LNI-HFTDMDVAWLKKYE 159

Query: 76  SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT--TESNILNMRNLKK-SNSLPRALNEK 132
           +  R   + + ++      +++   Y  +  +           +  K    +  RAL+++
Sbjct: 160 TWLRNNGLAENTIGIRFRTLRTIYNYAIQEDMVRAEHYPFKKYKVSKLNQETAKRALSKE 219

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
               ++         + +++        +  Y  G+   +  +LT +NI+D++   + + 
Sbjct: 220 DINRVLQYQ-----PDNRFMRLPIDLFAFTYYMGGINFVDIANLTQKNIIDNRLVYK-RS 273

Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG------KPLNPGV--FQ 244
           K  K+  +PL+P   + I +Y      D N     P+F             L+  +    
Sbjct: 274 KTGKLIKLPLVPQAVELIKKY-----HDKNSPYLFPIFSNRHTTEQEKANRLHKVITKVN 328

Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN-VNS 303
           + ++Q+   LG+P+  T +  RHS AT +   G     I  I+GH     TQ+Y +  ++
Sbjct: 329 KRLKQIGEELGIPIPITTYVARHSQATIMKKAGISTAIIGQIMGHSSERVTQVYLDSFDN 388

Query: 304 KNGGDWMMEI 313
           +   + M  +
Sbjct: 389 EQINNAMKNL 398


>gi|222033338|emb|CAP76078.1| lambdoid prophage Qin defective integrase [Escherichia coli LF82]
          Length = 426

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/320 (12%), Positives = 99/320 (30%), Gaps = 53/320 (16%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT-EEKITIQTIRQLSYTEIRAFISK 77
           + +L   E E  ++K +L +Y    +  L  +        I  + + ++    +  +   
Sbjct: 86  EKFLALKETE--VAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLTGYQIP 143

Query: 78  RRTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +             ++   ++ + +  ++        ++    +  LK+S ++P  L+ +
Sbjct: 144 KSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLPDNPFKGISPLKESRTIPDPLSRE 203

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + + L+D      +            +  +    G+R  E  +L  ++I     T+ I+ 
Sbjct: 204 EFIRLIDACRNQQAKN----------LWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRR 253

Query: 193 KGDKIRIVPLLPSV--------------------------RKAILEYYDLCPFDLNLNIQ 226
              K R                                  ++ I++ +            
Sbjct: 254 NLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKC 313

Query: 227 LPLF-------RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
             +F           G        +       +  GL    +  + RH++A   L+ G +
Sbjct: 314 TFVFQPEVSARVKNYGDHFTVDSIRHMWDAAIKRAGLRHRKSYQS-RHTYACWSLTAGAN 372

Query: 280 LRSIQSILGHFRLSTT-QIY 298
              I + +GH       Q+Y
Sbjct: 373 PAFIANQMGHADAQMVFQVY 392


>gi|153816821|ref|ZP_01969488.1| integrase [Vibrio cholerae NCTC 8457]
 gi|126512624|gb|EAZ75218.1| integrase [Vibrio cholerae NCTC 8457]
          Length = 343

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 99/256 (38%), Gaps = 40/256 (15%)

Query: 67  SYTEIRA--------FISKRRTQKI-GDRSLKRSLSGIKS-FLKYLKKRKITTESNILNM 116
           +Y++ R+        F+  R  +      ++   L+  K+ F K  +  +    + + ++
Sbjct: 108 TYSDFRSRRMSGELIFVDGRWNRGKPSISTMNSELARFKAVFNKLKELGEWNAPNPLDDV 167

Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           +  ++S      L  +Q   L++ V  H   +          I+ +    G R +EA  L
Sbjct: 168 KPFRESEREMSFLTTEQIKLLLELVAQHEIADMLK-------IVKICLSTGARWNEAAKL 220

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236
               + + + T     K  K R VP+   +   I +                        
Sbjct: 221 RGSQLSEYKITYT-NTKTKKNRTVPISRELYDEIYK--------------------PTSG 259

Query: 237 PLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
            L    +  +   L+  LG+  P    +H LRH+FA+H + NGG++  ++ +LGH  +S 
Sbjct: 260 RLFEECYTPFCYILKNKLGITLPSGQASHVLRHTFASHFMMNGGNILVLRDVLGHADISM 319

Query: 295 TQIYTNVNSKNGGDWM 310
           T  Y++    +  D +
Sbjct: 320 TMRYSHFAPDHLSDAI 335


>gi|325953868|ref|YP_004237528.1| integrase [Weeksella virosa DSM 16922]
 gi|323436486|gb|ADX66950.1| integrase family protein [Weeksella virosa DSM 16922]
          Length = 388

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 62/289 (21%), Positives = 121/289 (41%), Gaps = 26/289 (8%)

Query: 26  EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85
           ++++ L   +   Y C  R  L  +     +K++IQ+I +     I   I  + ++K  +
Sbjct: 94  KLKQRLKPKSYSDYLCTNRFILDAVIRLKYDKLSIQSIERYHIKTIMEDI--KISRKWSN 151

Query: 86  RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145
            +  ++L  +KS L  L +  I   +    +R LK   S P +    Q  T +   L   
Sbjct: 152 HAYNKNLGYLKSILSELVEFDIIKTNPAHGIRLLKYETS-PTSFPTDQEQTKIIQHLYAR 210

Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPL 202
                  +      +  LY  G+R +E L L   ++  D+  + ++   GK +K R+VP+
Sbjct: 211 -------NFTYLRFVKALYQTGMRPAELLRLKVGDVDLDRDLILLKSDDGKTNKYRLVPI 263

Query: 203 LPSVRKAILE----------YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252
              ++K +L           Y    P      +            +      +Y ++  +
Sbjct: 264 KSDLKKDLLTIISPTHGPDLYLFGTPRKHGGKLDYSEMFSPNKYKIKRDTVTKYWKKYIK 323

Query: 253 -YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
             LG+  +   ++L+H  A  ++ +G D+ +IQ+I GH +  TT+IY N
Sbjct: 324 DELGINKNL--YSLKHKAANDMMFDGLDIETIQAIFGHSKAKTTEIYAN 370


>gi|168181351|ref|ZP_02616015.1| phage integrase [Clostridium botulinum Bf]
 gi|182675514|gb|EDT87475.1| phage integrase [Clostridium botulinum Bf]
          Length = 390

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 95/303 (31%), Gaps = 50/303 (16%)

Query: 48  IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI 107
           IF  +  +  I   ++ +L   +I+ + +           +      +K FL Y      
Sbjct: 93  IFSNYIEKSPIACISLEKLQPIDIQRYYNTLFKSGKSSNIINNLNKLLKQFLNYCVDSGY 152

Query: 108 TTESNILNMR-------NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
             ++     +        +++ N +    +  + + ++              D +   I 
Sbjct: 153 ILKNPCDGKKVIIPKDNKIRRENKILPIFSRDEVINILRQKE----------DTKIRYIS 202

Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------------------------GKGDK 196
            + Y  G+R  E L L   +I    + + I+                             
Sbjct: 203 LISYATGMRKGEILGLKESDIDYTNNEIHIRRAMVTTYIFDENGKKHKETFLDDTKTYTS 262

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL-------NLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
            R +PL  S+   I     L   D+       N N +  LF    G+ +      +    
Sbjct: 263 ERDIPLPKSLIPIINAAISLKKRDILKAGNSFNENNKDLLFLSENGEYIEASNIDKSWIY 322

Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308
             +   +      H LRH++AT    N   L +I  +LGH  +  T   YT+V  K    
Sbjct: 323 FLKRCRVN-HKKFHALRHTYATIQFENEIPLLTISKLLGHASIDITASTYTHVMKKEKEK 381

Query: 309 WMM 311
            + 
Sbjct: 382 AIE 384


>gi|330971914|gb|EGH71980.1| Phage integrase [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 468

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 52/299 (17%), Positives = 108/299 (36%), Gaps = 28/299 (9%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           L   T++ Y   T+ ++ F       + T + +     +E+         ++I  RS   
Sbjct: 19  LRPDTVKIYWAATKSYVRFFGDCLACETTHRDMLDWRRSEL---------ERISKRSWNT 69

Query: 91  SLSGIKSFLKYLKKRKITT--ESNILNMR--NLKKSNSL---PRALNEKQALTLVDNVLL 143
             S +++   Y  +  +     + + N R    K+         ++  +  L ++     
Sbjct: 70  YSSHLRTIYSYAIEHGLLDLVVNPLKNTRVMPPKRPKKTVANDASVRARNWLRMLTAEER 129

Query: 144 HTSHETKWIDARNSA-ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
            T+  T+   A     +    Y  G+R++  L L   ++      +R++G+ +K     L
Sbjct: 130 ATAKRTEITPAWFWLSVFETFYYTGIRLNALLCLRYADVYLRDRLIRVRGETEKTHREFL 189

Query: 203 --LPSVRKAILEYYDLCPFDLNLNIQLPLFR------GIRGKPLNPGVFQRYIRQLRRYL 254
             +P    A LE        L       LF         R   +N    +   ++L    
Sbjct: 190 IPIPDGLMAQLETLMHAAKALRFQPGDQLFNVNRFSGHYRRHEMNSNQVEAMYKKLTAMT 249

Query: 255 GLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           G+    T H  RH+ A+ L++    ++   + +L H  ++TT  Y   +     + M E
Sbjct: 250 GI--RMTPHRFRHTIASELMTLPERNIYLTKKLLNHSNIATTMDYIEPDYDMMREVMNE 306


>gi|307608888|emb|CBW98287.1| hypothetical protein LPW_01441 [Legionella pneumophila 130b]
          Length = 397

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/298 (13%), Positives = 104/298 (34%), Gaps = 43/298 (14%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           ELL+E   +L   +  +  S  T + Y+      L+ +    E       I+ L    +R
Sbjct: 98  ELLRE---FLAEAKSTKEAS--TYRGYKRVCEGHLLPMFDKVE-------IQDLQPAMLR 145

Query: 73  AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-------RNLKKSNSL 125
            +I   +      +++   L+ +++ ++     +   E+ + ++       +  KKS+  
Sbjct: 146 KWIRGLQ---CTTKTVANILTPLRAVIEQALVDQYIKENPLNSIIVDKLLNKETKKSDYK 202

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185
           P   +  +   +++             + +   +    +  GLR+SE + L  +++    
Sbjct: 203 PDPFSVDEINAILNES-----------EGQVRLLFQFAFFTGLRVSELIGLRWEDVDWQN 251

Query: 186 STLRIQGK------GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG---IRGK 236
             + ++                +   +                 + +  +F      +  
Sbjct: 252 QIIHVEETIVYKEAKGPKTEAGVRDVLLLPPALEALEQQKQYTFSQKGRVFHNPQTNKPW 311

Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294
             +  + +     + +  G+    T  T RH++A+ +LS G ++  +   LGH  +  
Sbjct: 312 ETSQQIRRTQWMHILKRAGIRYRNTYQT-RHTYASMMLSQGENIMWVSKQLGHVDVEM 368


>gi|294849556|ref|ZP_06790298.1| phage integrase [Staphylococcus aureus A9754]
 gi|294823693|gb|EFG40120.1| phage integrase [Staphylococcus aureus A9754]
          Length = 353

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 111/278 (39%), Gaps = 18/278 (6%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
           + T + Y    +          + KI    + +++    + FI+    +   + +++++ 
Sbjct: 82  ENTYRHYRNALQH-------IQKHKIGKMELSKINRQVYQKFINDYSKEHAKE-TIRKTN 133

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             I+S L       +  ++    + N K         +E++    V    +   H  K  
Sbjct: 134 GAIRSALDDALYDGLIFKNPAYKV-NYKAGKP---TKSEQEKFISVTEYEILKDHVRKKR 189

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212
              + A+  ++   G R+S A ++  ++I   ++T+ I  +        +  S+ K+ ++
Sbjct: 190 TRSSLALF-IMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYI--SIAKSDMK 246

Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272
           +         ++    +F+      +N       ++   R   + +  T+H LRH+  ++
Sbjct: 247 HIMDVISTFAISYDGYIFKEAGSI-INLHAINNALKSACRVNNISI-ITSHALRHTHCSY 304

Query: 273 LLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDW 309
           LL+ G  +  I   LGH  ++ TT +Y+++  +   + 
Sbjct: 305 LLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEE 342


>gi|226349907|ref|YP_002777020.1| putative integrase/recombinase [Rhodococcus opacus B4]
 gi|226245822|dbj|BAH47089.1| putative integrase/recombinase [Rhodococcus opacus B4]
          Length = 315

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 55/291 (18%), Positives = 95/291 (32%), Gaps = 42/291 (14%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK---------- 89
                Q+L+       E      +       +  F++          ++           
Sbjct: 11  RMHLTQYLLLRNRLGHELAYAARL-------LPRFVTYLEDLGHSTVTIADALAWCQQPP 63

Query: 90  ---------RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
                    R +  ++ F +YL      TE   + +   ++    P   +          
Sbjct: 64  SPPGSSVWPRRMGAVRGFARYLSGIDPATEVPPIGLLPSRRRWRPPFIYSSDDIAA---L 120

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRI 199
           +    +  +    A  S +  LL   G+R+ EAL+L   +I  D   + ++  K  K R 
Sbjct: 121 LGAAAALPSPRRAATYSTLFGLLAATGMRVGEALTLDSSDIDWDDGVVLVRESKFGKSRN 180

Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL- 258
           VPL  S  +A+  Y  L             F  + G+ +           LRR  G+   
Sbjct: 181 VPLSDSTTEALARYASLREGFDRTPGNESYFVSLTGRRVIYESVFEVFADLRRSSGIGRQ 240

Query: 259 -STTA--HTLRHSFAT----HLLSNGGD----LRSIQSILGHFRLSTTQIY 298
            + T   H LRH+FA         +GGD    L  + + LGH    +T  Y
Sbjct: 241 STVTPRIHDLRHTFAVTVLLQWYRDGGDVAARLPRLSTYLGHRDPRSTYWY 291


>gi|223369824|gb|ACM88781.1| integrase [uncultured bacterium]
          Length = 163

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 47/94 (50%)

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267
           +A  +      F        P    +    L     Q+ ++   R   +  + + HTLRH
Sbjct: 69  EADRQLGWQYLFPAAKRGVDPRTGAVHRHHLAESAVQKMVKGAVRRTEIAKNASCHTLRH 128

Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           SFATHLL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 129 SFATHLLESGSDIRTVQELLGHNDVRTTMIYTHV 162


>gi|331673161|ref|ZP_08373929.1| putative lambdoid prophage Qin defective integrase [Escherichia
           coli TA280]
 gi|331069359|gb|EGI40746.1| putative lambdoid prophage Qin defective integrase [Escherichia
           coli TA280]
          Length = 431

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/320 (12%), Positives = 100/320 (31%), Gaps = 53/320 (16%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT-EEKITIQTIRQLSYTEIRAFISK 77
           + +L   E E  ++K +L +Y    +  L  +        I  + + ++    +  +   
Sbjct: 91  EKFLALKETE--VAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLTGYQIP 148

Query: 78  RRTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +             ++   ++ + +  ++        ++    +  LK+S ++P  L+ +
Sbjct: 149 KSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLPDNPFKGISPLKESRTIPDPLSRE 208

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + + L+D      +            +  +    G+R  E  +L  ++I     T+ I+ 
Sbjct: 209 EFIRLIDACRNQQAKN----------LWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRR 258

Query: 193 KGDKIRIVPLLPSV--------------------------RKAILEYYDLCPFDLNLNIQ 226
              K R                                  ++ I++ +            
Sbjct: 259 NLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKC 318

Query: 227 LPLF-------RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
             +F           G        ++      +  GL    +  + RH++A   L+ G +
Sbjct: 319 TFVFQPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQS-RHTYACWSLTAGAN 377

Query: 280 LRSIQSILGHFRLSTT-QIY 298
              I + +GH       Q+Y
Sbjct: 378 PAFIANQMGHADAQMVFQVY 397


>gi|221632578|ref|YP_002521799.1| putative integrase [Thermomicrobium roseum DSM 5159]
 gi|221156118|gb|ACM05245.1| putative integrase [Thermomicrobium roseum DSM 5159]
          Length = 359

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 55/333 (16%), Positives = 105/333 (31%), Gaps = 46/333 (13%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           +  P +    + +  + WL      +     T   Y       +  +    +       +
Sbjct: 47  DQAPPVGRVTVRELCERWLATER--KRWKPKTYYDYRWHLEHHVYPVLGRVQ-------L 97

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123
            +L+   ++ F           RS   +   +        +     ++    +       
Sbjct: 98  SKLTPDRLQRFFDSL-----SGRSANLTFRLLHRCFVVGIRWGFLGQNPCDRVVPPAYQA 152

Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183
             P  L +  AL  +    L +             ++ L   CGLR  E  +L   +I  
Sbjct: 153 P-PIELPDADALARLFRYCLESDDPYAG-------LVGLSLLCGLRRGEITALRWSDIDL 204

Query: 184 DQSTLRIQGKGDKI--RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL------------ 229
               L +   G  I  R V   P  R      Y        L  Q  L            
Sbjct: 205 QTGQLSVVRSGQWIAGRWVETEPKTRAGRRTIYVGEQGIRLLRRQKALVAQLKLQAGPAW 264

Query: 230 ------FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283
                 F G  G+PL+P      ++++ +  G+P     H+LRH+ A+  L  G  L  +
Sbjct: 265 QEHGLVFPGPNGQPLSPSRVAAAVQRICKASGVP-PLRHHSLRHASASLALLAGVPLPEV 323

Query: 284 QSILGHFRLSTT-QIYTNV--NSKNGGDWMMEI 313
              LGH  +S T ++Y++   + +   + +  +
Sbjct: 324 SRQLGHANVSITARVYSHCISDGRRVTEAIERV 356


>gi|218662079|ref|ZP_03518009.1| site-specific tyrosine recombinase XerC [Rhizobium etli IE4771]
          Length = 100

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/98 (45%), Positives = 61/98 (62%)

Query: 4   NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63
           N L  I    L+ ER  WL+NL  ER LS+ TL +YE DTRQFL FL  +     T+  I
Sbjct: 2   NELLVIADPRLMAERAAWLENLARERRLSEHTLDAYERDTRQFLTFLTGHLAGPATLSDI 61

Query: 64  RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY 101
           R+L   + RAF++ RR Q  G RSL R+L+G++S L++
Sbjct: 62  RELRPADFRAFLAARRKQGSGARSLGRNLAGLRSLLRH 99


>gi|153814728|ref|ZP_01967396.1| hypothetical protein RUMTOR_00943 [Ruminococcus torques ATCC 27756]
 gi|145847759|gb|EDK24677.1| hypothetical protein RUMTOR_00943 [Ruminococcus torques ATCC 27756]
          Length = 396

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/316 (13%), Positives = 108/316 (34%), Gaps = 48/316 (15%)

Query: 30  GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSL 88
           G+   T+  Y               ++    + I  +  ++ + ++   +  +K    S+
Sbjct: 97  GVRPTTVAGYGTVINLL-------KKDPFGKRRIDTIRISDAKCWLIHLQQIEKKSYSSI 149

Query: 89  KRSLSGIKSFLKYLKKRKITTESNIL--NMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146
                 ++   +      +  ++      M  +   +    A++  +    +   +    
Sbjct: 150 HSIRGVLRPAFQLAVDDDLVRKNPFQFQLMEVVVNDSVTREAISRAEERKFLR-FVKEDP 208

Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---------------- 190
           H   + +      +Y+L+  GLRISE   LT  +I   + T+ I                
Sbjct: 209 HFCGYYEG-----IYILFKTGLRISEFCGLTISDIDFKEHTINIDHQLQKKSKIGYYIQE 263

Query: 191 ----QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR--------GIRGKPL 238
                G         +    RK I +        +       L+          +  +  
Sbjct: 264 TKTTSGTRKIPMTADVEECFRKIIEKRNPPKAEPMVDGKSGFLYFDKNGSICYSLHWEHY 323

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QI 297
              + Q+Y    +  + +    T H  RH++ +++  +G + +++Q ++GH  +S T   
Sbjct: 324 FQHIIQKYNNTYKAQMTV---ITPHVCRHTYCSNMAKSGMNPKALQYLMGHSDISVTLNT 380

Query: 298 YTNVNSKNGGDWMMEI 313
           YT+VN ++  + +  I
Sbjct: 381 YTHVNLEDAREEVARI 396


>gi|330826867|ref|YP_004390170.1| integrase family protein [Alicycliphilus denitrificans K601]
 gi|329312239|gb|AEB86654.1| integrase family protein [Alicycliphilus denitrificans K601]
          Length = 310

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 88/242 (36%), Gaps = 15/242 (6%)

Query: 89  KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
            + L  ++ F ++ +     TE     +   +   + P  L   + +  +    L     
Sbjct: 65  AQRLGYVRGFARHHRASDPATEVPAPGLLPFRPGRARP-YLYASEEIAGLLAQALQLPPV 123

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVR 207
           +      +  +L LL   GLRI EAL L   ++  D   L ++G K  + R+VP+  S  
Sbjct: 124 SGLRHRTHHTLLGLLSVTGLRIGEALRLRLDDVDLDAGVLTVRGTKFGQSRLVPIHASTC 183

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-----PLSTTA 262
           + +  Y       L        F    G PL+ G   R    L R +GL           
Sbjct: 184 EVLAGYRRCRAEHLGDCQSPHFFVTRTGHPLDCGDVHRTFYHLSRAVGLRGPTDSHGPRL 243

Query: 263 HTLRHSFA----THLLSNGGDLR----SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
           H  RH FA     +   +  D+      + + LGH  ++ T  Y + + +     M  + 
Sbjct: 244 HDFRHRFAVETLMNWYRSEQDIERRLPVLSTYLGHVHVADTYWYLSAHPQLLTLAMDRVQ 303

Query: 315 DQ 316
            +
Sbjct: 304 RR 305


>gi|237801873|ref|ZP_04590334.1| Phage integrase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331024731|gb|EGI04787.1| Phage integrase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 467

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 52/299 (17%), Positives = 109/299 (36%), Gaps = 28/299 (9%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           L   T++ Y   T+ ++ F       + T + +     +E+         ++I  RS   
Sbjct: 19  LRPDTVKIYWAATKSYVRFFGDCLACETTHRDMLDWRRSEL---------ERISKRSWNT 69

Query: 91  SLSGIKSFLKYLKKRKITT--ESNILNMR--NLKKSNSL---PRALNEKQALTLVDNVLL 143
             S +++   Y  +  +     + + N R    K+         ++  +  L +++    
Sbjct: 70  YSSHLRTIYGYAIEHGLLDLVVNPLKNTRVMPPKRPKKTVANDASVRARNWLRMLNAEER 129

Query: 144 HTSHETKWIDARNSA-ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202
            T++ T+   A     +    Y  G+R++  L L   ++      +R++G+ +K     L
Sbjct: 130 ATANRTEITPAWFWLSVFETFYYTGIRLNALLCLRYADVYLRDRLIRVRGETEKTHREFL 189

Query: 203 --LPSVRKAILEYYDLCPFDLNLNIQLPLFR------GIRGKPLNPGVFQRYIRQLRRYL 254
             +P    A LE        L       LF         R   +N    +   ++L    
Sbjct: 190 IPIPDGLMAQLETLMQAAKALRFQPGDQLFNVNRFSGHYRRHEMNSNQVEAMYKKLTAMT 249

Query: 255 GLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           G+    T H  RH+ A+ L++    ++   + +L H  ++TT  Y   +       M E
Sbjct: 250 GI--RMTPHRFRHTIASELMTLPERNIYLTKKLLNHSNIATTMDYIEPDYDMMRGVMNE 306


>gi|94442286|dbj|BAE93642.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 46/91 (50%)

Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
            E+     F        P    IR   L+    Q+ +++  R  G+      HTLRH FA
Sbjct: 71  REFKWQFLFPSGRLSADPYGGRIRRHHLHESTLQKSVKKAARGCGINKRVGCHTLRHCFA 130

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           THLL    D+R++Q +LGH  +STT IYT+V
Sbjct: 131 THLLEASHDIRTVQELLGHAHVSTTMIYTHV 161


>gi|30908742|gb|AAP37603.1| IntI [uncultured bacterium]
          Length = 161

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/93 (37%), Positives = 50/93 (53%)

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           A  E+     F        P       + ++P   Q+  ++  R   +P +   HTLRHS
Sbjct: 69  AAREWAWQYVFPSKSLSVDPRTDQKARQHVSPSSLQKVFKEALRKTRIPKNAGPHTLRHS 128

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           FATHLL +G D+R+IQ +LGH  +STT IYT+V
Sbjct: 129 FATHLLQDGYDIRTIQDLLGHKEISTTMIYTHV 161


>gi|311742022|ref|ZP_07715832.1| phage integrase family protein [Aeromicrobium marinum DSM 15272]
 gi|311314515|gb|EFQ84422.1| phage integrase family protein [Aeromicrobium marinum DSM 15272]
          Length = 372

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 100/260 (38%), Gaps = 32/260 (12%)

Query: 62  TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
            ++ +  + I A++    T+ +   ++K     ++S  +     ++      + +   ++
Sbjct: 95  PLKLVRRSHIEAWVKTMSTR-LAPTTIKTRFVIVRSVFRAAIADRVIVVDPCVGVTLPRR 153

Query: 122 SNS-----LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
             +     +P     ++   L+ +   + +   K       A + +    GLR  EA  +
Sbjct: 154 RKAEATMQIP---TMEEVGRLLAHADSNRASTRKGF----RAYVAMCAFAGLRKGEAAGV 206

Query: 177 TPQNIMDDQSTLRIQG--------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
              +I   +  L++                K    R + L   + + + +   +  +  N
Sbjct: 207 QVGDIDHVRGLLKVSRQLQREGNTFVTRLPKYGSERGIFLPVELVETLAD--HIATYLPN 264

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282
            + +  LF  +  +P++        R  R    LP     H LRH +A+ L++ G D+ +
Sbjct: 265 ADPEAWLF-TVGDRPMSDNDIHWRWRATRASAKLP-HVRLHDLRHFYASGLIAAGCDVVT 322

Query: 283 IQSILGHFRLSTT-QIYTNV 301
           +Q  LGH   +TT   Y+++
Sbjct: 323 VQRALGHAAATTTLNTYSHL 342


>gi|295133121|ref|YP_003583797.1| transposase [Zunongwangia profunda SM-A87]
 gi|294981136|gb|ADF51601.1| putative transposase [Zunongwangia profunda SM-A87]
          Length = 426

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 63/294 (21%), Positives = 114/294 (38%), Gaps = 28/294 (9%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-------QKI 83
           L+  T ++Y    +    FL    E K     + Q++YT I  F +  RT       + +
Sbjct: 126 LAPGTAKNYNATEKYVSRFLK--KEFKSNDIPLAQINYTFIVKFENYLRTCPPLSKSRPL 183

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
               + + L  ++ F     K      +     +   +    P  L   +   L   +LL
Sbjct: 184 NHNGMMKHLERLQKFTTLALKHGWLKSNPFALYQLKYEEFDCP-FLERDE---LDSIMLL 239

Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIV 200
             S E+  +      +       GL   E  +L   +I   +DD+  + ++ +  K  + 
Sbjct: 240 RISQESIRLV---RDVFVFSCYTGLSYIEVKNLKQCDIVNGIDDEQWIMVRRQKTKTPVK 296

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260
             +    KAILE Y   P + N    L +F        +     ++++++     +  + 
Sbjct: 297 LPVLDEAKAILEKYADYPSEENNYSLLRMF--------SDQKINKHLKKIAELCNIKKNL 348

Query: 261 TAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
           T H  RH+FAT   L N   + ++  +LGH +LSTTQ Y  V  K     M ++
Sbjct: 349 TFHVARHTFATTIALLNDVPIETVSKMLGHTKLSTTQKYARVIEKKISSDMTKL 402


>gi|320658751|gb|EFX26425.1| putative defective integrase; Qin prophage [Escherichia coli O55:H7
           str. USDA 5905]
          Length = 427

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/320 (12%), Positives = 100/320 (31%), Gaps = 53/320 (16%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT-EEKITIQTIRQLSYTEIRAFISK 77
           + +L   E E  ++K +L +Y    +  L  +        I  + + ++    +  +   
Sbjct: 86  EKFLALKETE--VAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLTGYQIP 143

Query: 78  RRTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +             ++   ++ + +  ++        ++    +  LK+S ++P  L+ +
Sbjct: 144 KSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPDPLSRE 203

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + + L+D      +            +  +    G+R  E  +L  ++I     T+ I+ 
Sbjct: 204 EFIRLIDACRNQQAKN----------LWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRR 253

Query: 193 KGDKIRIVPLLPSV--------------------------RKAILEYYDLCPFDLNLNIQ 226
              K R                                  ++ I++ +            
Sbjct: 254 NLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKC 313

Query: 227 LPLF-------RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
             +F           G        ++      +  GL    +  + RH++A   L+ G +
Sbjct: 314 TFVFQPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQS-RHTYACWSLTAGAN 372

Query: 280 LRSIQSILGHFRLSTT-QIY 298
              I + +GH       Q+Y
Sbjct: 373 PAFIANQMGHADAQMVFQVY 392


>gi|301026700|ref|ZP_07190109.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 69-1]
 gi|300395347|gb|EFJ78885.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 69-1]
          Length = 431

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/320 (12%), Positives = 100/320 (31%), Gaps = 53/320 (16%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT-EEKITIQTIRQLSYTEIRAFISK 77
           + +L   E E  ++K +L +Y    +  L  +        I  + + ++    +  +   
Sbjct: 91  EKFLALKETE--VAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLTGYQIP 148

Query: 78  RRTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +             ++   ++ + +  ++        ++    +  LK+S ++P  L+ +
Sbjct: 149 KSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPDPLSRE 208

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + + L+D      +            +  +    G+R  E  +L  ++I     T+ I+ 
Sbjct: 209 EFIRLIDACRNQQAKN----------LWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRR 258

Query: 193 KGDKIRIVPLLPSV--------------------------RKAILEYYDLCPFDLNLNIQ 226
              K R                                  ++ I++ +            
Sbjct: 259 NLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKC 318

Query: 227 LPLF-------RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
             +F           G        ++      +  GL    +  + RH++A   L+ G +
Sbjct: 319 TFVFQPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQS-RHTYACWSLTAGAN 377

Query: 280 LRSIQSILGHFRLSTT-QIY 298
              I + +GH       Q+Y
Sbjct: 378 PAFIANQMGHADAQMVFQVY 397


>gi|296162525|ref|ZP_06845315.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295887233|gb|EFG67061.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 393

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 63/352 (17%), Positives = 116/352 (32%), Gaps = 74/352 (21%)

Query: 11  SFELLKERQNWLQNLEIE--RGLSKLTLQSYECDTRQFLIFLAF-------YTEEKITIQ 61
             EL+K   ++L  + +E  R  S  T +SY      +  +L           +  +   
Sbjct: 27  DMELVKPASDYLMWVALENARTRSPATWKSYAEAVYDYFAWLEANSLSWDALPQHSVDAG 86

Query: 62  TIRQLSY-----TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI--- 113
            I  ++       ++    S R +  +   ++++ LS I  F ++   R    +      
Sbjct: 87  EISNVALYRNWSLDVLDCRSGRHS--MQPSTVRKRLSQIMRFYEWAAARNRIADVPWDIG 144

Query: 114 ------LNMRN-------LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL 160
                  ++R+        K      R L   Q   L+ N   +T             + 
Sbjct: 145 VSRAGDESIRSTIRESTLPKVPRHAVRFLTIDQCRALLQNCRGNTI----------RLMT 194

Query: 161 YLLYGCGLRISEALSLTPQ---NIMDDQSTLRI---------QGKGDKIRIVPLLPSVRK 208
            L+   GLR  E  +   +   +    + + RI         + KG + R +     + K
Sbjct: 195 KLMLQTGLRNEECRTFPMKYLFDPASARRSHRIAIDLSPSDMKLKGGRPRRIYASGQLIK 254

Query: 209 AILEYYDLCPFDLNLN--------IQLPLFRGIRGKPLNPGVFQRYIRQLR-----RYLG 255
            + ++ +     +  N            +F    G P +        R+L          
Sbjct: 255 DLFDFANFGEGAVRANLYRMTYGKASPYVFLNRLGAPWSEKGLCNAYRKLCSPDAPAKPS 314

Query: 256 LPLSTTAHTLRHSFATH-LLSN------GGDLRSIQSILGHFRLSTTQIYTN 300
           L    T H LRH+FAT  L +       G  L  ++  LGH  +STT  Y +
Sbjct: 315 LDFKVTPHMLRHTFATLELYAESQNRNLGYALAWVRDRLGHASISTTTAYVH 366


>gi|293367759|ref|ZP_06614408.1| transposase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|291318098|gb|EFE58495.1| transposase [Staphylococcus epidermidis M23864:W2(grey)]
          Length = 689

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 113/336 (33%), Gaps = 28/336 (8%)

Query: 5   NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64
           N  +I S ++ +  + +L+N  I   ++  T + Y    R    F    ++ K T  ++ 
Sbjct: 219 NFEKIESIKMRELAKKYLKNRLITGDIAFATARFY---IRVLTRFFQNISKNKETRNSLN 275

Query: 65  QLSYTEIRAFISKRRTQKIGDRSLKRS------LSGIKSFLKYLKKRKITTESNILNMRN 118
           +L    I A+I                      L  I+ FL  +  +         ++R 
Sbjct: 276 ELDRCHIEAYIEFLFEYAANKHLQSTKNFVREELKTIRRFLNDIITQNYAIA-PYQDIRF 334

Query: 119 LKKSNSLPR--ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
           L     LP+    N  Q   + D VL         +      ++++ +  GLRIS+ L+L
Sbjct: 335 LIYPQDLPKHEKKNSSQIDYIPDFVLEQLFEHINDLHKDLIPVVWIAFKTGLRISDVLTL 394

Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ---------L 227
               +        I     K  +      +   + +   +   D                
Sbjct: 395 QNNCLAKVNGKYSIITDIAKTFVKGHRIPIDNKLADIIAVLIADSKSKSTKDNNPNNYIF 454

Query: 228 PLFRGIRG-KPLNPGVFQRYIRQLRRYLGLP------LSTTAHTLRHSFATHLLSNGGDL 280
            +++G R   P    + + ++  L +   +            H  RH++A  LL+ G D+
Sbjct: 455 AIYKGKRKGMPFTQHMVRAHLNHLSKIKNIIDEQGEIFHFKTHQFRHTYAVKLLNGGADI 514

Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
            +IQ +L H     T  Y  +           + DQ
Sbjct: 515 LTIQELLAHSSPEMTLRYAKLLDDTKRKAFESVIDQ 550


>gi|253751017|ref|YP_003024158.1| integrase [Streptococcus suis SC84]
 gi|253752917|ref|YP_003026057.1| integrase [Streptococcus suis P1/7]
 gi|253754742|ref|YP_003027882.1| integrase [Streptococcus suis BM407]
 gi|330831952|ref|YP_004400777.1| hypothetical protein SSUST3_0111 [Streptococcus suis ST3]
 gi|251815306|emb|CAZ50874.1| putative integrase [Streptococcus suis SC84]
 gi|251817206|emb|CAZ54929.1| putative integrase [Streptococcus suis BM407]
 gi|251819162|emb|CAR44300.1| putative integrase [Streptococcus suis P1/7]
 gi|319757268|gb|ADV69210.1| hypothetical protein SSUJS14_0101 [Streptococcus suis JS14]
 gi|329306175|gb|AEB80591.1| hypothetical protein SSUST3_0111 [Streptococcus suis ST3]
          Length = 377

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 107/313 (34%), Gaps = 53/313 (16%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-- 79
           +  +  +R        +YE   + + I              + +LSY  I  F    +  
Sbjct: 81  ISYISTQRN-------NYERHIKPYFIN-----------TNLNKLSYEHIFEFREYLKIK 122

Query: 80  ------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
                 +  +   ++ + +  +K       ++ +  ++ + N+R L  S       N ++
Sbjct: 123 PKKQNDSSTLSHNTVNKIMILLKKIFDTGVRKSLIDKNPVENIRKLPISKPTINFWNVEE 182

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                +   L TS E  +          + +  G+R+ E ++LT  +I    +++ I   
Sbjct: 183 FN---EFRKLITSDEISYD-----LFFTIAFFTGMRLGEIVALTWYDINLITNSIHITKT 234

Query: 194 ---------------GDKIRIVPLLPSVRKAILEYYDLCPFDLN---LNIQLPLFRGIRG 235
                              R + +   + + + ++ +     L     + +         
Sbjct: 235 AYFVNGTNHINSTKTRAGTRRITINHKLARMLADWKEKQKDLLKEFTTDTENLQVIQSTP 294

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            P+   +  +  +Q+            H LRHS A+ L++ G D   ++  LGH  ++TT
Sbjct: 295 LPMTKNMIDKKFKQILARNDYLKKIRIHDLRHSHASLLINQGEDYLVVKERLGHASITTT 354

Query: 296 -QIYTNVNSKNGG 307
              Y+++      
Sbjct: 355 IDTYSHLYPSKQK 367


>gi|38505673|ref|NP_942293.1| hypothetical protein slr7005 [Synechocystis sp. PCC 6803]
 gi|38423697|dbj|BAD01907.1| slr7005 [Synechocystis sp. PCC 6803]
          Length = 188

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 71/188 (37%), Gaps = 12/188 (6%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           + L E++   L    LL           R+  +  +    G RI EA SL   +I  D  
Sbjct: 10  KVLTEQELHDLFTVGLL---------TPRDRLLFGICLYTGCRIGEACSLAWADITTDAM 60

Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQR 245
           T RI+    K      +    + + + Y      +       +FRG R    L+P +  +
Sbjct: 61  TFRIEKTKTKSSRTVAISPALQVLFDEYRQAQQFVRF-PSSYVFRGKRVGSHLHPSMAHK 119

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305
            ++     + +    + H+ R +  T +   G +LR IQ I GH  L+    Y  V+ + 
Sbjct: 120 ILKAATDRISV-RGVSTHSFRRTALTMMCRKGINLRVIQKISGHKNLNVLSHYLEVSEQE 178

Query: 306 GGDWMMEI 313
               +  I
Sbjct: 179 KEQALSTI 186


>gi|329117566|ref|ZP_08246283.1| site-specific recombinase, phage integrase family [Streptococcus
           parauberis NCFD 2020]
 gi|326907971|gb|EGE54885.1| site-specific recombinase, phage integrase family [Streptococcus
           parauberis NCFD 2020]
          Length = 377

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 52/323 (16%), Positives = 115/323 (35%), Gaps = 56/323 (17%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT- 80
           +  L  +R        +Y+   + +   +            +++L+Y  I  F    +  
Sbjct: 81  ISYLTTQRN-------NYDRHIKTYFQQV-----------DMKKLTYEHIYRFRESLKEK 122

Query: 81  -------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
                  +K+ + ++ + +  +K       + ++ T++   N+R L         LN   
Sbjct: 123 STKQNSEEKLSNNTINKIMILVKKMFDSGIRNELITKNPCQNLRKLPIKKP---ELNFWG 179

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG- 192
               +    L T  E ++          L Y  G+R+ E L+LT  +I    ST+ +   
Sbjct: 180 IEEYLKFKSLITEDEYQYN-----LFFTLAYFTGMRMGEILALTWNDINFYTSTIHVTKS 234

Query: 193 --------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIRG 235
                              R + L   +   + E+ +     L+    + Q         
Sbjct: 235 VYYVHKTNHVNSTKTRAGTRYITLNQKLLNTLKEWKNKQGEILSQFTNSTQNLQVIQSTP 294

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
             +   +  +  +Q+ +      +   H  RHS A+ L++ G D   ++  LGH  ++TT
Sbjct: 295 VTVTKNMIDKKFKQILQRDPNLKTIRIHDFRHSHASLLINQGEDYLVVKERLGHASITTT 354

Query: 296 -QIYTNV---NSKNGGDWMMEIY 314
              Y+++     K+  D + ++Y
Sbjct: 355 IDTYSHLYPSKQKSIADKLDDLY 377


>gi|46191295|ref|ZP_00206749.1| COG0582: Integrase [Bifidobacterium longum DJO10A]
          Length = 281

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 94/274 (34%), Gaps = 42/274 (15%)

Query: 48  IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI 107
            +       K   ++I  ++  ++  +++   T+    R ++   S +K F ++  KR +
Sbjct: 14  RWYQIVRFSKAVDKSITDVTEDDLIFYLAGMGTEG--RRGVR---SCVKVFYQWSMKRGL 68

Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167
              +    +       +LP                 +        D      + L   CG
Sbjct: 69  AHCNPADEV--PTVPMTLPSG---------CICPEENIEQGLASPDENARLAVMLGAFCG 117

Query: 168 LRISEALSLTPQNIMDDQ---STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
           LR  E   +  +  +++      L + GKG+K R++P+   +  A+ +            
Sbjct: 118 LRRIEMTRINLKTDLEENAEGMVLHVHGKGNKERMLPVPAKLASALRK-----------R 166

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF-ATHLLSNGGDLRSI 283
             + LF G            + I+ +           +H+LR  F       NG ++  +
Sbjct: 167 TGVWLFPGDVQGHCGVDYVAKRIKTV-------TGYPSHSLRRRFATCVYYRNGCNIVLV 219

Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
             +LGH  ++TT  Y  +      D M    + T
Sbjct: 220 SRMLGHANIATTMRYIGL----VQDEMRNAVEST 249


>gi|329963113|ref|ZP_08300893.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328529154|gb|EGF56084.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 343

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 102/282 (36%), Gaps = 18/282 (6%)

Query: 35  TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
           T  +Y    R F+ F      E I +  I   + T + ++        +   +L   +  
Sbjct: 56  TASNYRTAVRSFIKFNK---GEDIPLVDI---NSTLMDSYGEWLLQNNVSKDTLSCYMRS 109

Query: 95  IKSFLKYLKKRKITTE-SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153
           +++      K+    + +   N+     S +  RA+ ++    L   VL        ++ 
Sbjct: 110 LRALYNKAVKKGYVQQCNPFSNVFTG-ISRTRKRAIEKEDIRKLQQAVL----PPGSFMR 164

Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213
                 L+  Y CG+   +   L    +     T         +RI  L P +++ I  Y
Sbjct: 165 LVRDVFLFCFYACGMPFIDVAFLKKSQLEGGFMTYNRHKTDQPVRIK-LEPCMQEIINRY 223

Query: 214 Y---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270
                   F    +    +      + ++   + R ++ L + +G+  S +++  RH++A
Sbjct: 224 ISNDREYVFPFLSSSDEDIAYKEYQQKMS--YYNRTLKILGKKVGICRSLSSYVPRHTWA 281

Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
           T    +  DL  I   LGH    TT+IY      N  D + +
Sbjct: 282 TLAFRSAADLLVISQALGHTDTKTTRIYVKDIGSNKQDTVNK 323


>gi|301299373|ref|ZP_07205654.1| site-specific recombinase, phage integrase family [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300853027|gb|EFK80630.1| site-specific recombinase, phage integrase family [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 305

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 55/283 (19%), Positives = 106/283 (37%), Gaps = 28/283 (9%)

Query: 32  SKLTLQSYECDTRQFLIFLAFYTEEKITIQ-TIRQLSYTEIRAFISKRRTQKIGDRSLKR 90
           S+ T+  Y         +LA    +K+     + Q++  E +  I++         ++  
Sbjct: 25  SERTIDKY---------WLAHRHLKKLAPDLELGQITRIEYQKIINEFAETHEKATTMDF 75

Query: 91  SLSGIKSFLKYLKKRKITTESNILN--MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148
               +KS +       +          ++  K      + L+E +   L+ ++ L T   
Sbjct: 76  HHQ-LKSSILDAFDDGLIDRDPTRKTVVKGKKPGKKKQKYLSEFELKMLLRHLHLGTEPN 134

Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI------RIVPL 202
             W       ++ L+   GLR  EAL LT ++   +   + I    D        +    
Sbjct: 135 LDW-------LILLVAKTGLRFGEALGLTKEDFDFENQIINISKTWDYKAARGGFKSTKN 187

Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262
             S+RK  L++     F+  L            K +        ++Q    L +P+  + 
Sbjct: 188 KSSIRKVQLDWKLCMQFNTLLRDFPDGTPIFVKKRVFNSTVNNRLKQYCEELAIPI-ISI 246

Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI-YTNVNSK 304
           H LRH+ A+ LL  G  + S+   LGH  ++TTQ  Y ++  +
Sbjct: 247 HGLRHTHASMLLFAGVSIASVAKRLGHADMTTTQQTYLHIIQE 289


>gi|325453347|gb|ADZ13628.1| integrase [Cronobacter phage ENT47670]
          Length = 387

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 82/240 (34%), Gaps = 27/240 (11%)

Query: 84  GDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142
              +    LS IK+ L+  ++  K+  ++ I+ +   K      R L   +A  L+D   
Sbjct: 142 ATATKATHLSFIKALLRAAEREWKMLDKAPIVKVPQPKNKR--IRWLEPHEAKRLIDEC- 198

Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRI 199
                  K        ++      GLR S  ++L  Q I   +    I   Q K ++   
Sbjct: 199 ---PDPLKS-------VVEFALATGLRRSNIINLEWQQIDMQRRVAWIHPEQSKSNQAIG 248

Query: 200 VPLLPSVRKAI------LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253
           V L  +  + +         +     +            +R    +     R      + 
Sbjct: 249 VALNDTACRVLKRQIGNHHKWVFVYKESCTRPDGTKVPTVRKMRYDANTAWRA---ALKR 305

Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313
            G+      H LRH++A+ L+  G  +  +Q + G   +   + Y ++   +  +   +I
Sbjct: 306 AGIE-DFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAHLAPNHLTEHAKQI 364


>gi|301162189|emb|CBW21734.1| putative bacteriophage integrase [Bacteroides fragilis 638R]
          Length = 368

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 86/251 (34%), Gaps = 32/251 (12%)

Query: 71  IRAFISKRRTQKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
            R ++   +  K  +R     S     S  +  LK   + K   E+    +  ++  +  
Sbjct: 139 FREYLLNAKQLKHSNRPMSLNSASGYYSTFRGLLKIAYRDKWFRENINDYLDKIEPQDVK 198

Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--- 182
              L   +   L           T        A        GLRIS+ L+L  ++     
Sbjct: 199 KEYLTLNEVKQL---------AATPCDIPVLKAASLFACLTGLRISDILNLQWEDFTIAP 249

Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242
           D    LRI+ +  +           +A L                 +F+      L   +
Sbjct: 250 DQGYCLRIRTQKTQT----------EATLPISYEAYELCGTPGTGKVFKD-----LKRSM 294

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
               ++   +  G+    T H  RHS+A   +S G D+ ++  +L H  +STTQIY ++ 
Sbjct: 295 INYPLKSWLKKAGITKPITFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLV 354

Query: 303 SKNGGDWMMEI 313
           +    +   +I
Sbjct: 355 NSKKRETANKI 365


>gi|210622955|ref|ZP_03293460.1| hypothetical protein CLOHIR_01408 [Clostridium hiranonis DSM 13275]
 gi|210153921|gb|EEA84927.1| hypothetical protein CLOHIR_01408 [Clostridium hiranonis DSM 13275]
          Length = 377

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 102/298 (34%), Gaps = 30/298 (10%)

Query: 40  ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99
           E  T  +  +   + +  +    +  +    +  F +K + +     S       I S L
Sbjct: 80  ESTTNNYARYYKKHIKPILGNYKVSDIKARVLSDFFNKLKEEDKCHSSANIIRVVISSCL 139

Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159
            Y        E+N        K        +        + +L   S +  + +      
Sbjct: 140 DYAIFPLEIIENNSCKFIKFPKFKKTKDKKDIIDMKDF-ETILDIGSSKHNFNNMC---- 194

Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------------GDKIRIVPLL 203
             LL   GLRI EAL L  ++I  D   + ++                     IR +   
Sbjct: 195 -LLLLHTGLRIGEALGLQWEDIDFDNKIIHVRHTLIAPNVRECKLSTPKTKTSIRDIYFN 253

Query: 204 PSVRKAIL-----EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            +V K        +  +   F +  N    +F    G  L+   F   + ++ R   +  
Sbjct: 254 DTVEKVFKNIKKSQNENRLKFGVLYNCNNMVFTHEDGSFLDHHHFTNMVAKINRKTNINF 313

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEIYD 315
             + HT RH+ AT LL  G +++ +Q+ LGH  +STT  IY     ++    + +  D
Sbjct: 314 --SMHTFRHTHATMLLQAGANMKDVQARLGHADISTTMNIYVQDTEESKKKALDKFND 369


>gi|159046290|ref|YP_001541962.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|157914049|gb|ABV95481.1| phage integrase [Dinoroseobacter shibae DFL 12]
          Length = 369

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 100/300 (33%), Gaps = 48/300 (16%)

Query: 31  LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-----IGD 85
            S+ TL++Y  D   F  +      E +        S   I  +++   +       +  
Sbjct: 63  ASENTLKAYAKDWAHFTRWCRMKGAEALPP------SPELIGLYLADLASATGASPALSV 116

Query: 86  RSLKRSLSGIK-SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144
            S++R LSG+  +F +               +  +K+ ++ P    +K+A+   D + + 
Sbjct: 117 SSIERRLSGMAWNFAQRGSTLDRKNRHIATVLAGIKRKHARPPV--QKEAILAEDILAMV 174

Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTP--QNIMDDQSTLRI---------QGK 193
            +        R+ AIL + +  GLR SE +SL     +  D    + I         +GK
Sbjct: 175 ATLSFDLRGLRDRAILLIGFAGGLRRSEIVSLDHGKDDTPDSGGWVNILEAGAILTLRGK 234

Query: 194 GDKI-----RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-------PLNPG 241
                    R          A+ ++      D       P+F G            LN  
Sbjct: 235 TGWREVEIARGSKDRTCPVHALEQWLHFARIDFG-----PVFVGTSRDGKRALEARLNDK 289

Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG------GDLRSIQSILGHFRLSTT 295
              R I++  R  G+            F+ H L  G       D R +Q  LGH     T
Sbjct: 290 HVARLIKRTIRDAGIRSELPEKDRLALFSGHSLRAGLASSAEVDERYVQKQLGHASAEMT 349


>gi|326778612|ref|ZP_08237877.1| integrase family protein [Streptomyces cf. griseus XylebKG-1]
 gi|326658945|gb|EGE43791.1| integrase family protein [Streptomyces cf. griseus XylebKG-1]
          Length = 374

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 63/326 (19%), Positives = 107/326 (32%), Gaps = 51/326 (15%)

Query: 43  TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK--IGDRSLKRSLSGIKSFLK 100
            R+F  F   Y           Q   TE  AFI   RT+       S +   + ++ F +
Sbjct: 58  VRRFAEFSNQYPW---------QWQPTEFEAFIDHLRTKTPTFTVSSGRNYQNHLRLFCE 108

Query: 101 YL-----------------KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143
           ++                    +I  E N +   +  + +   R L   +   L D    
Sbjct: 109 FITDPRYGWMSVCQERFGEVPVQILHEWNTVTHVSEYEGDPSRRPLTYDEIQDLFDAADG 168

Query: 144 HTSHETKW------IDARNSAILYLLYGCGLRISEALSLTPQNIMDD--------QSTLR 189
                 K          R+SA++   Y  G+R  E + L   ++  +           + 
Sbjct: 169 RVEEIRKRGRKGALTAMRDSALIKTYYAYGMRRRENVGLDIADLRRNPKAPQYRRHGAVF 228

Query: 190 IQG---------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
           ++          K   I  VP +  + + +  Y         +     ++   R   L+ 
Sbjct: 229 VRWGKSSKGSPPKRRTIFTVPEMDWIVEDLDHYLTEVRPRFGVGKHPAIWVTERSGRLSR 288

Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
                     ++  GLP     H LRHS+ THL       R IQ   GH   STT +YT 
Sbjct: 289 RSANEAFEAAKQAAGLPDELELHCLRHSYITHLTEFDYPERFIQDQAGHGYASTTALYTG 348

Query: 301 VNSKNGGDWMMEIYDQTHPSITQKDK 326
           V+ +     + +   Q +P I +  K
Sbjct: 349 VSDEYRNRLVHKKLGQRYPGIWEDPK 374


>gi|257051242|ref|YP_003129075.1| integrase domain protein SAM domain protein [Halorhabdus utahensis
           DSM 12940]
 gi|256690005|gb|ACV10342.1| integrase domain protein SAM domain protein [Halorhabdus utahensis
           DSM 12940]
          Length = 353

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 52/360 (14%), Positives = 120/360 (33%), Gaps = 78/360 (21%)

Query: 9   IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
            +  E+    + +L ++  + G S+ T  +YE   R F   L    E+ + +      S+
Sbjct: 6   AIPEEVEDPIEYFLTDITYQ-GKSQRTSDAYERVLRDFEASLRENGEKPLAVA-----SH 59

Query: 69  TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128
            +  A+I  +R + +   ++    S +  F  Y+ +  +   + +  +            
Sbjct: 60  RDCMAWIHSQREE-LSKSTVATYASYLHRFYAYMTQIGVFDSNPMAIV------------ 106

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDAR--------NSAILYLLYGCGLRISEALSLTPQN 180
              ++    +D            +           + A++  L   G+R+ E  +L  ++
Sbjct: 107 --VEEMDERIDADPARRDVSIPEMQGFVSGIDHPLDRAVIVTLLKTGMRVGELCNLDQRD 164

Query: 181 ---IMDDQSTLRIQ------------------------------GKGDKIRIVPLLPSVR 207
                D + ++  +                               K  +  +VP+   + 
Sbjct: 165 LHLSDDPRESVTTRPALDGRPDSLFVASEPSRGATVNGEQRAASNKRRRDTVVPVDADLA 224

Query: 208 KAILEYYDLCPFDLNLNIQLPLFRG---IRGKPLNPGVFQRYIRQLRRYL-------GLP 257
           + +  + D+ P  ++     PLF       G+ +     +  +              G+ 
Sbjct: 225 ETLRAWLDVRPDPVSSAR--PLFTSTTDNWGQRITTDGVRHIVTSHASVHGWYDNGGGVE 282

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            + T H  RH F THL    GD   ++ + G         YT+    + GD + ++Y+  
Sbjct: 283 ENVTPHYFRHFFTTHLRDRTGDRGIVKYLRGDVAQDIIDTYTH----DWGDRVRDVYEDH 338


>gi|325270644|ref|ZP_08137242.1| hypothetical protein HMPREF9141_2452 [Prevotella multiformis DSM
           16608]
 gi|324987039|gb|EGC19024.1| hypothetical protein HMPREF9141_2452 [Prevotella multiformis DSM
           16608]
          Length = 424

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 108/277 (38%), Gaps = 26/277 (9%)

Query: 50  LAFYTEEKITIQTIRQ--LSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRK 106
           +  Y  E++ ++ IR   L Y  I       ++++ +   +++ ++  ++  +   +++K
Sbjct: 144 IEGYLRERLGLEDIRYSLLDYGFIEGLDFYLKSERNLSLATIQVAVIFLRKLIGIGQQKK 203

Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166
                  ++ +  +  +   R L  ++   ++   ++    E          +       
Sbjct: 204 YIRIDPFVDYKA-ELPHRTRRYLTTEELQRVLQTPIIDRQFERA------RQLFLFCAFT 256

Query: 167 GLRISEALSLTPQNIM---DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
           GL   +   L P++I+   D    +RI + K D   I+PLLP   + +  Y        +
Sbjct: 257 GLARVDMQRLKPKHIIRNADGTEEIRIKRQKTDVEAIIPLLPIANQILSLYI------KD 310

Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLR 281
                 +F       L           + +   +    T H  RH+F+T   LSNG  + 
Sbjct: 311 KKADELIFPN-----LTIRKASFACVNIGQICRIDKGLTFHMARHTFSTTICLSNGISME 365

Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318
           ++  +LGH  + TTQIY  +      + M  + D+ H
Sbjct: 366 TLSKMLGHSNIGTTQIYGKITDHKIQEDMTALTDREH 402


>gi|168489338|ref|ZP_02713537.1| integrase [Streptococcus pneumoniae SP195]
 gi|183572289|gb|EDT92817.1| integrase [Streptococcus pneumoniae SP195]
 gi|332071706|gb|EGI82199.1| phage integrase family protein [Streptococcus pneumoniae GA17570]
          Length = 388

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 82/232 (35%), Gaps = 22/232 (9%)

Query: 96  KSFLKYLKKRKITTESNILNMRNLKKSNS---LPRALNEKQALTLVDNVLLHTSHETKWI 152
           K  LKY    +    +   ++   ++        + L++      +   L    +   + 
Sbjct: 147 KRILKYAVSLQAIPFNPARDVIVPRRKEKEGQKLKYLDDDNLKKFL-TYLEQLPN--TYK 203

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK------------GDKIRIV 200
           +  ++ +   L   GLRI E L+L   +I     TL +                  IR++
Sbjct: 204 NFYDTVLYKTLLATGLRIRECLALKWSDIDLKNGTLDVNKTLNIIKEITGPKTKSSIRVI 263

Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258
            L       +  Y                 +F     K ++  +    + +     G P 
Sbjct: 264 DLDNKTVLMLRLYKARQSQIGKEMGLTYEKVFSNSFDKHIDARMLSFRLVKHLERAGCPR 323

Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDW 309
             T H  RH+ A+ LL+ G   + IQ  LGH +LS T  IY++++  N  + 
Sbjct: 324 -FTFHAFRHTHASILLNAGLPYKEIQIRLGHAKLSMTMDIYSHLSKDNQKNA 374


>gi|149012704|ref|ZP_01833680.1| prophage LambdaSa1, site-specific recombinase, phage integrase
           family protein [Streptococcus pneumoniae SP19-BS75]
 gi|147763304|gb|EDK70242.1| prophage LambdaSa1, site-specific recombinase, phage integrase
           family protein [Streptococcus pneumoniae SP19-BS75]
          Length = 375

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 101/274 (36%), Gaps = 37/274 (13%)

Query: 63  IRQLSYTEIRAFISKRRTQK--IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
           +  L    ++  I K       I  + ++  L GI     Y  +      + +      +
Sbjct: 105 LANLDRRFLQEAIEKIIESNGYITAKKVRHRLRGI---FNYAVQYSYIENNEVDYTTIPQ 161

Query: 121 KSNSLPR-------ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173
           K  +L          L  ++   LVD +     H+          ++ +L   G+R  E 
Sbjct: 162 KPKTLEELEKKRNNFLTMQEIKALVDVLNRREYHQKYAD------MVLVLALTGMRYGEL 215

Query: 174 LSLTPQNIMDDQSTLRIQG-------------KGDKIRIVPLLPSVRKAILE---YYDLC 217
            +L  +NI  + + + I G               + IR + +  SV +AI          
Sbjct: 216 TALQLKNIDFENNKIEITGNFDSVNKIKTLPKTTNSIRTIKVSESVIEAIQRQIVRLSER 275

Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
              L+ +  +  F     +P     F + +++  +   +  + ++H  RHS  + L  +G
Sbjct: 276 FQPLSSDDYIFCFE-KWNQPTTIACFIQILKKYGKQAKIEKNLSSHIFRHSHISFLAESG 334

Query: 278 GDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310
             ++SI   +GH     T +IY++  +++  D +
Sbjct: 335 LPIKSIMDRVGHSNAKMTLEIYSH-TTEDMEDKL 367


>gi|146317758|ref|YP_001197470.1| hypothetical protein SSU05_0100 [Streptococcus suis 05ZYH33]
 gi|145688564|gb|ABP89070.1| unknown protein [Streptococcus suis 05ZYH33]
 gi|292557559|gb|ADE30560.1| Integrase, catalytic core, phage [Streptococcus suis GZ1]
          Length = 380

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 107/313 (34%), Gaps = 53/313 (16%)

Query: 22  LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-- 79
           +  +  +R        +YE   + + I              + +LSY  I  F    +  
Sbjct: 84  ISYISTQRN-------NYERHIKPYFIN-----------TNLNKLSYEHIFEFREYLKIK 125

Query: 80  ------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
                 +  +   ++ + +  +K       ++ +  ++ + N+R L  S       N ++
Sbjct: 126 PKKQNDSSTLSHNTVNKIMILLKKIFDTGVRKSLIDKNPVENIRKLPISKPTINFWNVEE 185

Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193
                +   L TS E  +          + +  G+R+ E ++LT  +I    +++ I   
Sbjct: 186 FN---EFRKLITSDEISYD-----LFFTIAFFTGMRLGEIVALTWYDINLITNSIHITKT 237

Query: 194 ---------------GDKIRIVPLLPSVRKAILEYYDLCPFDLN---LNIQLPLFRGIRG 235
                              R + +   + + + ++ +     L     + +         
Sbjct: 238 AYFVNGTNHINSTKTRAGTRRITINHKLARMLADWKEKQKDLLKEFTTDTENLQVIQSTP 297

Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295
            P+   +  +  +Q+            H LRHS A+ L++ G D   ++  LGH  ++TT
Sbjct: 298 LPMTKNMIDKKFKQILARNDYLKKIRIHDLRHSHASLLINQGEDYLVVKERLGHASITTT 357

Query: 296 -QIYTNVNSKNGG 307
              Y+++      
Sbjct: 358 IDTYSHLYPSKQK 370


>gi|223369852|gb|ACM88795.1| integrase [uncultured bacterium]
          Length = 163

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/93 (37%), Positives = 48/93 (51%)

Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268
           A  E+     F  +     P     R         QR ++Q  R  G+    + HTLRHS
Sbjct: 70  ADREWGWQFVFPSSRRSIDPRSGIERRHHAPEDALQRAVKQALRKAGIVKPGSVHTLRHS 129

Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
           FATHLL +G D+R++Q +LGH  + TT IYT+V
Sbjct: 130 FATHLLESGYDIRTVQELLGHADVKTTMIYTHV 162


>gi|265751258|ref|ZP_06087321.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
 gi|263238154|gb|EEZ23604.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
          Length = 405

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 56/319 (17%), Positives = 118/319 (36%), Gaps = 28/319 (8%)

Query: 3   GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62
            N++PE +      ER+     L + R     +  +Y       L    F     +    
Sbjct: 97  ANSVPEYLLQAGEVERER----LRV-RSKEINSTSTYRQSKTTQLNLRQFVESRGMKDIA 151

Query: 63  IRQLSYTEIRAFISKRRTQKIGDRS--LKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120
              ++     +F    + + +G R+  +   L  +   +     R++   + I ++   K
Sbjct: 152 FSDITGEFAESFKVFLKKE-LGHRNGHVNHCLCWLNRLIYIAVDREVLRTNPIEDVAYEK 210

Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180
           K     R ++  +   +++     T      ++      ++     GL  ++  +L P++
Sbjct: 211 KDAPKLRHISRNELKRMME-----TPMPDPMMELARRTFIFSCM-TGLAYADTRALHPRH 264

Query: 181 I---MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
           I    + +  +RI+     +     L  V K ILE Y+        +   P+F       
Sbjct: 265 IGKTSEGRRYIRIRRAKTDVEAFIPLHPVAKQILELYNT------TDEGKPVFPLPV--- 315

Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
               V    +  +   LG+  + + H  RHSF T  L+ G  + SI  ++GH  + +TQ+
Sbjct: 316 --RDVLWYEVHGMGVALGMRENLSYHMARHSFGTLTLTAGIPIESIARMMGHTNIDSTQV 373

Query: 298 YTNVNSKNGGDWMMEIYDQ 316
           Y  V  +     M  + ++
Sbjct: 374 YAQVTDRKISSDMDRLMER 392


>gi|313126348|ref|YP_004036618.1| site-specific recombinase xerd [Halogeometricum borinquense DSM
           11551]
 gi|312292713|gb|ADQ67173.1| site-specific recombinase XerD [Halogeometricum borinquense DSM
           11551]
          Length = 351

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 57/348 (16%), Positives = 108/348 (31%), Gaps = 70/348 (20%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ-TIRQLSYTEIRAFISKRR 79
           +LQ++    G ++ T  +YE   R+F  FL       +  +  + + S+ +  A+I   R
Sbjct: 18  FLQDMTYH-GKTERTRDAYERVLRRFEAFLTDPEANPMDAEKRVSEASHRDCMAWIHSLR 76

Query: 80  TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139
                D ++    S +  F  Y+ +      + +               L  ++    +D
Sbjct: 77  RADAADSTIATYASYLHRFYAYMTQVGAFEANPM--------------TLVMEEMDEQID 122

Query: 140 NVLLHT--------SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---- 187
                         +   +     + A++  L   G+R+ E  +L  +++     T    
Sbjct: 123 ANPSRREISISGMRAFLREVHHPLDHAVMVTLLKTGMRVGELCNLDCRDVSLADDTPLGD 182

Query: 188 -------------LRI-------------QGKGDKIRIVPLLPSVRKAILEYY--DLCPF 219
                        L +             +      R    +  V + +       L   
Sbjct: 183 VSNRAQLDGRGPSLYVSAEPAAGGTTNGERRTASNKRKRSTVVPVDEELEAVLTRWLAVR 242

Query: 220 DLNLNIQLPLFR---GIRGKPLNPGVFQRYIRQLRRYLGLPL-------STTAHTLRHSF 269
               +   PLF    G  G  L   +    + +     G          + T H  RH F
Sbjct: 243 PDVTSPAEPLFVSTSGSWGNRLTTDMVHHLVERHAAERGWHRAGGDAEENVTPHYFRHFF 302

Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317
            THL    GD   ++ + G         YT+    N GD + E Y+Q 
Sbjct: 303 TTHLRDRTGDRGIVKYLRGDVGGDIIDTYTH----NWGDRVRETYEQH 346


>gi|254454844|ref|ZP_05068281.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198269250|gb|EDY93520.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 395

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 99/296 (33%), Gaps = 27/296 (9%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
           + + Q   +ER     T   Y      F+          +    +  L   ++     K 
Sbjct: 102 ERFFQAHVMER-CKPSTQGEYRRAIDMFIN-------PALGSFKLVDLERKDVAELHHKF 153

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALT 136
           R +        R+L  +       +   +  +  +   ++   ++     R L++ +   
Sbjct: 154 RDKPYQA---NRTLGVLSKMFNLAEIWGLRPDGSNPCRHVPKYREHKRE-RYLSQVELQR 209

Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196
           L    +L  +           A   LL   G R+ E  +L    I D    L        
Sbjct: 210 L--GNVLADAELNGTETPHIIAAFRLLILTGCRLGEIQTLQWGFITDQGMEL--PDTKTG 265

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R +PL  + R  +            ++    +  G      +   FQ   R++R   GL
Sbjct: 266 ARRIPLPSAARAVL-------STLARVDGNPYVIVGKVAGK-HATDFQHPWRRIRERAGL 317

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
                 H LRH++A++ +S+G  ++ +  +LGH ++ TT  Y ++          E
Sbjct: 318 T-GVRIHDLRHTYASNAVSSGMPIQMVGRLLGHTQIQTTMRYAHLADDPVKKAAEE 372


>gi|28895789|ref|NP_802139.1| integrase (phage associated) [Streptococcus pyogenes SSI-1]
 gi|28811038|dbj|BAC63972.1| putative integrase (phage associated) [Streptococcus pyogenes
           SSI-1]
          Length = 303

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 58/320 (18%), Positives = 117/320 (36%), Gaps = 56/320 (17%)

Query: 9   IVSFELLKERQNWLQ---NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65
            ++ + LKE +  +Q    L+ ER ++K             L  L       I    I++
Sbjct: 5   ALTDQWLKEYEKTVQCSTYLKTERNINKH-----------ILPKLDKVKIGDINPLLIQR 53

Query: 66  LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125
           L+      + +  +          + L  +++ L    +      +  L +   K     
Sbjct: 54  LT----EEWCNDLKYGG-------KILGLVRNILNLAVRYGYINNNPALPITPPKIKRKR 102

Query: 126 PR---ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
                     Q    ++  L+  +   + I     A+  LL   G+R  E L+LT  ++ 
Sbjct: 103 KMNNNFYTLDQLKQFLE--LVEKTDNIEKI-----ALFRLLAFTGIRKGELLALTWDDLN 155

Query: 183 DDQSTLR-------------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229
            +  ++              +       R++ L     + +LE ++  P          +
Sbjct: 156 GNTLSINKAVTRTQVGLEIDVTKTKSSDRLISLDDETLEILLELHETFP------TSTLM 209

Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289
           F+   G  + P + ++++ Q+ +   LP   T H  RH+ A+ L  +G  L+ +Q  LGH
Sbjct: 210 FQSESGGIMTPSLPRKWLLQIIKGTDLPQ-ITIHGFRHTHASLLFESGLSLKQVQHRLGH 268

Query: 290 FRLSTTQ-IYTNVNSKNGGD 308
             L TT  +YT++      D
Sbjct: 269 GDLQTTMNVYTHITQSAIDD 288


>gi|146297219|ref|YP_001180990.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410795|gb|ABP67799.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 360

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 60/319 (18%), Positives = 115/319 (36%), Gaps = 48/319 (15%)

Query: 18  RQNWLQNLEIERGL-SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76
              WL+  E  +   +  T   Y+   +        +  +     T++QL+  E++ F +
Sbjct: 62  LDRWLE--EYAKNYVAPKTYIKYKDSLK--------HVRKAFPSHTLQQLNTFELQKFFN 111

Query: 77  KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQAL 135
           +  +Q +   S+++  S + + LK   K  +  E+ +  ++   K      +  + +   
Sbjct: 112 QL-SQTLSQASVRKIYSVLNNALKTAIKWNMLKENPLEFVKLPQKYEEKKIKVWDIETVK 170

Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---- 191
             ++++     H            + L    GLR  E   LT  N+  ++  + I+    
Sbjct: 171 KFLEDIKDEKIHTA----------VTLALHAGLRAGEICGLTWDNVDFEKKCIHIKQALQ 220

Query: 192 -----------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG--KPL 238
                           IR + +   + + +LE Y           +L  F  I     P 
Sbjct: 221 KIGKEIIIKPPKSKTSIRTIYMTSYLYETLLEEYKRQEPLREAYKKLGNFVCIHETGNPF 280

Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-- 296
            P  F    ++L   LG P     H LRH+FAT LL    + +    ILGH     T+  
Sbjct: 281 CPDYFTHTFKKLVSCLGYP-EIRFHDLRHTFATILLQAQTNPKIAAEILGHSN---TKLF 336

Query: 297 --IYTNVNSKNGGDWMMEI 313
             +Y +V  +       +I
Sbjct: 337 LNLYAHVLDEQKIKATHKI 355


>gi|331652960|ref|ZP_08353965.1| putative lambdoid prophage Qin defective integrase [Escherichia
           coli M718]
 gi|331049058|gb|EGI21130.1| putative lambdoid prophage Qin defective integrase [Escherichia
           coli M718]
          Length = 431

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/320 (11%), Positives = 100/320 (31%), Gaps = 53/320 (16%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT-EEKITIQTIRQLSYTEIRAFISK 77
           + +L   E E  ++K +L +Y    +  L  +        I  + + ++    +  +   
Sbjct: 91  EKFLALKETE--VAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLTGYQIP 148

Query: 78  RRTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +             ++   ++ + +  ++        ++    +  LK+S ++P  ++ +
Sbjct: 149 KSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPDPISRE 208

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + + L+D      +            +  +    G+R  E  +L  ++I     T+ I+ 
Sbjct: 209 EFIRLIDACRNQQAKN----------LWCVSVYTGIRPGELCALGWEDIDLKNGTMMIRR 258

Query: 193 KGDKIRIVPLLPSV--------------------------RKAILEYYDLCPFDLNLNIQ 226
              K R                                  ++ I++ +            
Sbjct: 259 NLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKC 318

Query: 227 LPLF-------RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
             +F           G        ++      +  GL    +  + RH++A   L+ G +
Sbjct: 319 TFVFQPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQS-RHTYACWSLTAGAN 377

Query: 280 LRSIQSILGHFRLSTT-QIY 298
              I + +GH       Q+Y
Sbjct: 378 PAFIANQMGHADAQMVFQVY 397


>gi|329313062|gb|AEB87475.1| Integrase [Staphylococcus aureus subsp. aureus T0131]
          Length = 405

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 62/351 (17%), Positives = 128/351 (36%), Gaps = 47/351 (13%)

Query: 1   MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60
           ++ N+  ++           WL++ +   G    T++  +          A   +  I  
Sbjct: 58  LKHNSTKQLEKLTFHDVCDEWLEHYKTHSGSKPTTIKEKKS--------NANTVKNAIDS 109

Query: 61  QT-IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRN 118
           +  I ++++T ++  I     +      ++  +  I+S  KY  K   +   S +  +  
Sbjct: 110 KVLISKITHTYLQN-IINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDI 168

Query: 119 LKKSNSLPR-------ALNEKQALTLVDNVLLHTSHETKWIDARNS----AILYLLYGCG 167
            KK+ +           L + +   L+        H+      RN     A++      G
Sbjct: 169 PKKAQTRNELQAKRNNYLEDSEVKELLQCFDYLIKHKRHATRKRNYEMVKALVEFQINNG 228

Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV------------------------PLL 203
           +RI E L++   NI  +  TL I G  + +                             +
Sbjct: 229 MRIGELLAIKKDNINYEDKTLDIDGTINWVTDKETGAFGVKETTKTSKSYRTIGLTTQSI 288

Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263
             ++  IL+      ++ +   +  +F    G P++       I++      +    T H
Sbjct: 289 NLLKTLILDNKKENQWNEDFIDRGYVFTNTAGSPIDLNKVNSIIKEATEISSINKRVTTH 348

Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313
           TLRH+  + L   G +L++IQ  +GH    TT +IYT+V  +   D M ++
Sbjct: 349 TLRHTHISTLAQLGINLKAIQDRVGHSDYKTTLEIYTHVTDQMAKDMMNKL 399


>gi|191638912|ref|YP_001988078.1| Integrase homolog [Lactobacillus casei BL23]
 gi|190713214|emb|CAQ67220.1| Integrase homolog [Lactobacillus casei BL23]
 gi|327382965|gb|AEA54441.1| hypothetical protein LC2W_2109 [Lactobacillus casei LC2W]
 gi|327386149|gb|AEA57623.1| hypothetical protein LCBD_2127 [Lactobacillus casei BD-II]
          Length = 397

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 101/298 (33%), Gaps = 37/298 (12%)

Query: 33  KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92
             T  S     + F +F   Y         + ++   +I+ + ++  T ++     +   
Sbjct: 89  PQTYDSRRSSLKHFKMFEHMY---------MDKIKPVDIQKWQNQM-TCQVSKSYTRLVQ 138

Query: 93  SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152
             +    +         E+    + N+KK  +      +++   ++    +       + 
Sbjct: 139 CMLSRVFQRAIVLGFMNENPTKTVGNVKKVKNQVDFWTKEEFEAVIKTFYIE-----DFY 193

Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------------GDK 196
                  L+ L+  G+RI EA +L   +I  ++ T+RI                      
Sbjct: 194 QHFCFFTLWFLFMTGMRIGEATALQWDDIDFEEGTVRINKTLWLRSYTNYSFSTPKTKAS 253

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
            R +PL     + + ++         L  +        G P    +  R I++     G+
Sbjct: 254 NRTIPLDAKTLELLSDW----KKAQALKCKTDFVLSFNGVPTRRDLVMRIIKRHAALAGV 309

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKNGGDWMMEI 313
                 H LRHS A+ L+S G +   I+  LGH  + TT   Y ++      +    +
Sbjct: 310 HR-IRVHALRHSHASLLISLGENPLVIKERLGHEDIQTTLGTYGHLYPNMNFEAAKRL 366


>gi|323169866|gb|EFZ55522.1| phage integrase family protein [Escherichia coli LT-68]
          Length = 431

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/320 (12%), Positives = 100/320 (31%), Gaps = 53/320 (16%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT-EEKITIQTIRQLSYTEIRAFISK 77
           + +L   E E  ++K +L +Y    +  L  +        I  + + ++    +  +   
Sbjct: 91  EKFLALKETE--VAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLTGYQIP 148

Query: 78  RRTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +             ++   ++ + +  ++        ++    +  LK+S ++P  L+ +
Sbjct: 149 KSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPDPLSRE 208

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + + L+D      +            +  +    G+R  E  +L  ++I     T+ I+ 
Sbjct: 209 EFIRLIDACRNQQAKN----------LWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRR 258

Query: 193 KGDKIRIVPLLPSV--------------------------RKAILEYYDLCPFDLNLNIQ 226
              K R                                  ++ I++ +            
Sbjct: 259 NLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKC 318

Query: 227 LPLF-------RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
             +F           G        ++      +  GL    +  + RH++A   L+ G +
Sbjct: 319 TFVFQPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQS-RHTYACWSLTAGAN 377

Query: 280 LRSIQSILGHFRLSTT-QIY 298
              I + +GH       Q+Y
Sbjct: 378 PAFIANQMGHADAQMVFQVY 397


>gi|309793340|ref|ZP_07687767.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
 gi|308122927|gb|EFO60189.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
          Length = 431

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/320 (12%), Positives = 100/320 (31%), Gaps = 53/320 (16%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT-EEKITIQTIRQLSYTEIRAFISK 77
           + +L   E E  ++K +L +Y    +  L  +        I  + + ++    +  +   
Sbjct: 91  EKFLALKETE--VAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLTGYQIP 148

Query: 78  RRTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +             ++   ++ + +  ++        ++    +  LK+S S+P  L+ +
Sbjct: 149 KSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRSIPDPLSRE 208

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + + L+D      +            +  +    G+R  E  +L  ++I     T+ I+ 
Sbjct: 209 EFIRLIDACRNQQAKN----------LWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRR 258

Query: 193 KGDKIRIVPLLPSV--------------------------RKAILEYYDLCPFDLNLNIQ 226
              K R                                  ++ I++ +            
Sbjct: 259 NLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKC 318

Query: 227 LPLF-------RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
             +F           G        ++      +  GL    +  + RH++A   L+ G +
Sbjct: 319 TFVFQPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQS-RHTYACWSLTAGAN 377

Query: 280 LRSIQSILGHFRLSTT-QIY 298
              I + +GH       Q+Y
Sbjct: 378 PAFIANQMGHADAQMVFQVY 397


>gi|301308315|ref|ZP_07214269.1| integrase [Bacteroides sp. 20_3]
 gi|300833785|gb|EFK64401.1| integrase [Bacteroides sp. 20_3]
          Length = 406

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 54/281 (19%), Positives = 108/281 (38%), Gaps = 25/281 (8%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSF 98
           Y+     +L+ L    ++ I ++ + +      +AF+  +R +  G       L  +   
Sbjct: 134 YQKYLTNYLMSL---GKKDIGLEEVTEDFGKAYKAFL--KRCKNFGASQTNHCLRWLNRL 188

Query: 99  LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158
           L     ++I   +    M    K  +  R ++ ++   ++      T    K ++    A
Sbjct: 189 LYLAVDKEIIRVNPCEEMEYETKPEARHRYISREEFKKIL-----STPMYDKRMELARRA 243

Query: 159 ILYLLYGCGLRISEALSLTPQN---IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215
            ++     GL   + + L P +     D +  +RI  K  KI     L  + + IL  Y+
Sbjct: 244 FIFSTL-TGLAYVDIMLLHPHHIGTNADGRRYIRINRKKTKIEAFIPLHPIAERILSLYN 302

Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275
                   + + P+F        N       I +L   +G   + + H  RHSF T L+S
Sbjct: 303 T------TDDEHPVFPLP-----NRDALWFEIHELGVIIGKEDNLSYHQSRHSFGTFLIS 351

Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316
           +   + SI  ++GH  + TTQ Y  +        M ++ ++
Sbjct: 352 SDIPIESIAKMMGHSNIRTTQGYARITDDKISRDMDKLMER 392


>gi|307138229|ref|ZP_07497585.1| putative defective integrase; Qin prophage [Escherichia coli H736]
 gi|331668249|ref|ZP_08369097.1| putative lambdoid prophage Qin defective integrase [Escherichia
           coli TA271]
 gi|284921484|emb|CBG34555.1| integrase [Escherichia coli 042]
 gi|323940346|gb|EGB36538.1| phage integrase [Escherichia coli E482]
 gi|331063443|gb|EGI35354.1| putative lambdoid prophage Qin defective integrase [Escherichia
           coli TA271]
          Length = 426

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/320 (12%), Positives = 100/320 (31%), Gaps = 53/320 (16%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT-EEKITIQTIRQLSYTEIRAFISK 77
           + +L   E E  ++K +L +Y    +  L  +        I  + + ++    +  +   
Sbjct: 86  EKFLALKETE--VAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLTGYQIP 143

Query: 78  RRTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +             ++   ++ + +  ++        ++    +  LK+S ++P  L+ +
Sbjct: 144 KSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPDPLSRE 203

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + + L+D      +            +  +    G+R  E  +L  ++I     T+ I+ 
Sbjct: 204 EFIRLIDACRNQQAKN----------LWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRR 253

Query: 193 KGDKIRIVPLLPSV--------------------------RKAILEYYDLCPFDLNLNIQ 226
              K R                                  ++ I++ +            
Sbjct: 254 NLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKC 313

Query: 227 LPLF-------RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
             +F           G        ++      +  GL    +  + RH++A   L+ G +
Sbjct: 314 TFVFQPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQS-RHTYACWSLTAGAN 372

Query: 280 LRSIQSILGHFRLSTT-QIY 298
              I + +GH       Q+Y
Sbjct: 373 PAFIANQMGHADAQMVFQVY 392


>gi|224502928|ref|ZP_03671235.1| Tn554-related, transposase A [Listeria monocytogenes FSL R2-561]
          Length = 307

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 108/273 (39%), Gaps = 37/273 (13%)

Query: 84  GDRSLKRSLSGIKSFLKYLKKRKITTESNI----LNMRNLKKSN----SLPRALNEKQAL 135
            ++++   ++ + SF K+L + +           ++++ +K+       + +     +++
Sbjct: 41  SEKTVNLKVTAVLSFYKFLYQFEHIEYDVAQRAYVDVKGIKQYKGFLHHITKNKRVSESI 100

Query: 136 TLVDNVLLHTSHETKWI---------DARNSAILYLLYGCGLRISEALSLTPQNIMDD-Q 185
             +            +          + R+  +L LLY  GLRI E LSL  ++I+ D  
Sbjct: 101 LKLKEPKSRVETIPDFTLQAALGATTNVRDFFLLRLLYETGLRIGEILSLHKEDILFDLH 160

Query: 186 STLRIQ-----------GKGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGI 233
              R++            +   +R V +  ++     +Y Y +  FD + ++ + +    
Sbjct: 161 QGHRVRLVYRKEQPNDSRQKTGLREVHISANLIDLFDDYMYSILDFDRSDSLFVKVKGKS 220

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           +G PLN        +++     +      H  RH+ AT       D++ +Q  LGH  + 
Sbjct: 221 QGLPLNYQDVMATFKRI--EGKIEYHLHPHLYRHTHATKYYEQTKDIKIVQERLGHKHIQ 278

Query: 294 TTQ-IYTNVNSKNGGDWMMEIYDQTHPSITQKD 325
           TT  +Y +   K     +   +++  P+   ++
Sbjct: 279 TTMNLYLHPTDKE----IRAQWEKASPAFRMEE 307


>gi|89147514|gb|ABD62617.1| integrase [uncultured bacterium]
          Length = 163

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/111 (34%), Positives = 52/111 (46%)

Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250
           +G G+      L      A  ++     F        P     R   ++  V  + I+  
Sbjct: 52  KGFGEAYLPHALGRKYPNAGKDWIWQYVFPAKSLAIDPRSDVTRRHHVDQSVINKAIKVA 111

Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
            R   +    +AHT RHSFATHLL  G D+R+IQS+LGH  L TT IYT+V
Sbjct: 112 VRKAEVSKKVSAHTFRHSFATHLLQRGTDIRTIQSLLGHRDLETTMIYTHV 162


>gi|307291405|ref|ZP_07571289.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|306497636|gb|EFM67169.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
          Length = 408

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/311 (16%), Positives = 100/311 (32%), Gaps = 44/311 (14%)

Query: 39  YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR--------RTQKIGDRSLKR 90
           Y    R ++          I    + +    + + FI+              +   ++K 
Sbjct: 94  YRDAIRMYIDPY-------IGNYQLNKYKPADHQKFINSLFTNKELGKNKNGLSYNTVKI 146

Query: 91  SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150
             + + +  K  +K      +    +              +K     ++   L       
Sbjct: 147 VNAALSNAFKKAQKLGYVKSNPTYLVEFPLDKVKEKNNKEKKLEFYTLEQENLFLDTARN 206

Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-----RIQGKGDK--------- 196
           + +        +++  GLR  E ++L   N     + L     R+  K            
Sbjct: 207 FDEYMWYVFFLIIFDLGLRKGEVMALRWFNFDFRDNILTFDKQRLYRKERPGQVILDDVK 266

Query: 197 ----IRIVPLLPSVRKAILEYYDLCPFDLN------LNIQLPLFRGIRGK----PLNPGV 242
                R + +   VR ++LE Y +     N       + +  LF   RGK    P+    
Sbjct: 267 TDAGKRSLKMTNRVRNSVLELYGINYDLTNNVLPMTKSNKDFLFINNRGKNVGLPIRQRS 326

Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
                 ++     LP     H  RH+ A  L   G  L  I+ +LGH  + TT+IY +V+
Sbjct: 327 VDTAWHRIINKAQLPK-IRIHDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVS 385

Query: 303 SKNGGDWMMEI 313
           ++     + ++
Sbjct: 386 AEVKERAVNKL 396


>gi|300821556|ref|ZP_07101703.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
 gi|300526059|gb|EFK47128.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
          Length = 431

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/320 (12%), Positives = 100/320 (31%), Gaps = 53/320 (16%)

Query: 19  QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT-EEKITIQTIRQLSYTEIRAFISK 77
           + +L   E E  ++K +L +Y    +  L  +        I  + + ++    +  +   
Sbjct: 91  EKFLALKETE--VAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLTGYQIP 148

Query: 78  RRTQ-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132
           +             ++   ++ + +  ++        ++    +  LK+S ++P  L+ +
Sbjct: 149 KSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPDPLSRE 208

Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192
           + + L+D      +            +  +    G+R  E  +L  ++I     T+ I+ 
Sbjct: 209 EFIRLIDACRNQQAKN----------LWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRR 258

Query: 193 KGDKIRIVPLLPSV--------------------------RKAILEYYDLCPFDLNLNIQ 226
              K R                                  ++ I++ +            
Sbjct: 259 NLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKC 318

Query: 227 LPLF-------RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279
             +F           G        ++      +  GL    +  + RH++A   L+ G +
Sbjct: 319 TFVFQPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQS-RHTYACWSLTAGAN 377

Query: 280 LRSIQSILGHFRLSTT-QIY 298
              I + +GH       Q+Y
Sbjct: 378 PAFIANQMGHADAQMVFQVY 397


>gi|261245548|emb|CBG23343.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. D23580]
          Length = 331

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 84/245 (34%), Gaps = 27/245 (11%)

Query: 79  RTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKSNSLPRALNEKQALTL 137
           + +     +    LS IK+ L+  ++  K+  ++ I+ +   K      R L   +A  L
Sbjct: 81  KPKPAAVATKATHLSFIKALLRAAEREWKMLDKAPIIKVPQPKNKR--IRWLEPHEAKRL 138

Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKG 194
           +D                  +++      GLR S  ++L  Q I   +    I   Q K 
Sbjct: 139 IDEC-----------QEPLKSVVEFALSTGLRRSNIINLEWQQIDMQRKVAWIHPEQSKS 187

Query: 195 DKIRIVPLLPSVRKAI------LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
           +    V L  +  + +         +     + +          +R    +     R   
Sbjct: 188 NHAIGVALNDTACRVLKKQIGNHHKWVFVYKESSTKPDGTKSPVVRKMRYDANTAWRA-- 245

Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308
              +  G+      H LRH++A+ L+  G  +  +Q + G   +   + Y ++   +  +
Sbjct: 246 -ALKRAGIE-DFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAHLAPNHLTE 303

Query: 309 WMMEI 313
              +I
Sbjct: 304 HARQI 308


>gi|123442607|ref|YP_001006584.1| putative phage integrase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089568|emb|CAL12417.1| putative phage integrase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 429

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 89/281 (31%), Gaps = 53/281 (18%)

Query: 58  ITIQTIRQLSYTEIRAF--ISKRRT-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTE 110
           IT + I  L    +  F  +   +T     +     ++   +S + + L +  +   + +
Sbjct: 127 ITQEDILSLRRELLTGFQILGHHQTNRSMKKGRSVPTVNVYISCLGAMLGFAFQNGYSDK 186

Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170
           + ++ +  LKK    P  L + +    +                    I  L    G+R 
Sbjct: 187 NPMIGVSPLKKGRPDPDPLTKSEYQRFLSASPSEQMKN----------IWILAINTGMRH 236

Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKI------------RIVPLLPSVRKAILEYYDL-- 216
            E  +L+ ++I     T+ I+     I            R + L     +A+     +  
Sbjct: 237 GEICALSWEDIDTKNWTITIRRNMAVINHFTPPKTDSGNREIRLTYPAIEALKNQMAMTR 296

Query: 217 ------------CPFDLNLNIQLPLFR-------GIRGKPLNPGVFQRYIRQLRRYLGLP 257
                             ++    +F        G  G   +PG        + +  G+ 
Sbjct: 297 LGECHDITVNLREFAKKRVDQCTFVFCPKISARNGNGGHWYSPGSIGTAWNAILKKAGI- 355

Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
               A+  RH+FA   LS G +   + + +GH       IY
Sbjct: 356 RHRKAYESRHTFACWALSAGANPNFVANQMGHASAQ--MIY 394


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.314    0.142    0.398 

Lambda     K      H
   0.267   0.0433    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,821,842,054
Number of Sequences: 14124377
Number of extensions: 231709016
Number of successful extensions: 772325
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 25796
Number of HSP's successfully gapped in prelim test: 11072
Number of HSP's that attempted gapping in prelim test: 685208
Number of HSP's gapped (non-prelim): 42297
length of query: 328
length of database: 4,842,793,630
effective HSP length: 139
effective length of query: 189
effective length of database: 2,879,505,227
effective search space: 544226487903
effective search space used: 544226487903
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 81 (35.7 bits)